590	chr1	768252	768253	rs2977608	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1p36.33	NR	rs2977608-C	0.489417	3E-21		0.0236	[0.019-0.029] unit increase	Affymetrix [23037915] (imputed)	N
590	chr1	768252	768253	rs2977608	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1p36.33	NR	rs2977608-A	0.259029	8E-6		1.0729614	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
590	chr1	780396	780397	rs141175086	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	1p36.33	LINC01128	rs141175086-C	0.998	4E-8		2.16	[1.34-3.49]	Affymetrix [73355677] (imputed)	N
591	chr1	882032	882033	rs2272756	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1p36.33	NR	rs2272756-A	NR	3E-6		0.324533	[0.19-0.46] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
591	chr1	891058	891059	rs13303065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.33	NR	rs13303065-T	NR	9E-10		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
591	chr1	894518	894519	rs115438739	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p36.33	NOC2L	rs115438739-A	NR	7E-6		7.540324	[4.4-10.69] unit increase	Illumina [> 6200000] (imputed)	N
591	chr1	894572	894573	rs13303010	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	1p36.33	NOC2L	rs13303010-G	0.11	8E-14		1.26	[1.19-1.35]	Illumina [11381182] (imputed)	N
591	chr1	895705	895706	rs13303327	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.33	KLHL17	rs13303327-G	0.0857658	4E-13		0.0237969	[0.017-0.03] unit increase	NR [13737936] (imputed)	N
591	chr1	895705	895706	rs13303327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.33		rs13303327-?	NR	5E-13				NR [~ 8900000] (imputed)	N
591	chr1	895705	895706	rs13303327	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.33		rs13303327-?	NR	8E-17		0.0289903	[0.022-0.036] unit increase	Affymetrix [20259828] (imputed)	N
591	chr1	896270	896271	rs112905931	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.33	KLHL17	rs112905931-C	0.356771	5E-11		0.00152735	[0.0011-0.002] unit decrease	Affymetrix [13995440] (imputed)	N
591	chr1	897865	897866	rs201385366	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	1p36.33	KLHL17	rs201385366-T	NR	4E-8	(LPE(22:6;0))	0.8736	[0.56-1.18] unit decrease	Illumina [~ 9300000] (imputed)	N
591	chr1	900518	900519	rs140019196	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	1p36.33	KLHL17	rs140019196-G	0.0	1E-12				Illumina [239042]	N
591	chr1	909308	909309	rs3829738	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.33	PLEKHN1	rs3829738-?	NR	9E-8		0.020311674	[0.013-0.028] unit increase	Illumina [27896057] (imputed)	N
591	chr1	915314	915315	rs529787043	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	1p36.33	C1orf170	rs529787043-G	NR	6E-6		0.02718	[0.015-0.039] unit increase	Illumina [NR] (imputed)	N
592	chr1	924448	924452	rs148375199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p36.33	NR	rs148375199-G	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr1	924527	924528	rs34712273	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p36.33	C1orf170	rs34712273-C	0.421269	2E-11		0.0133466	[0.0094-0.0173] unit increase	Affymetrix [NR] (imputed)	N
592	chr1	928415	928416	rs111754459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.33		rs111754459-A	NR	6E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
592	chr1	930376	930377	rs3128109	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.33		rs3128109-T	0.2	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
592	chr1	930376	930377	rs3128109	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.33	NR	rs3128109-T	0.233	4E-11				NR [9056863] (imputed)	N
592	chr1	931872	931873	rs2002848	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p36.33	NR	rs2002848-G	NR	1E-10		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
592	chr1	932456	932457	rs1891910	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	1p36.33	NR	rs1891910-G		5E-6				Illumina [458525]	N
592	chr1	935221	935222	rs2298214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p36.33		rs2298214-A	NR	2E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
592	chr1	935221	935222	rs2298214	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p36.33	HES4	rs2298214-C	0.422628	1E-10		0.0124547	[0.0086-0.0163] unit increase	Affymetrix [NR] (imputed)	N
592	chr1	943467	943468	rs3121567	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.33	ISG15	rs3121567-C	0.98609375	2E-12	(ISG15, 14151_4_3)	0.73554206	[0.53-0.94] unit increase	Illumina [> 1000000] (imputed)	N
592	chr1	945110	945111	rs13303172	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,366 Icelandic ancestry individuals	NA	1p36.33		rs13303172-C	0.01521	4E-20		0.707278	[0.56-0.86] unit decrease	Illumina [7506463] (imputed)	N
592	chr1	950242	950243	rs1891906	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.33	ISG15	rs1891906-C	0.386	1E-24	(Ubiquitin-like protein ISG15, ISG15.14151.4.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
592	chr1	958952	958953	rs2710889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.33		rs2710889-?	NR	2E-12				NR [~ 8900000] (imputed)	N
592	chr1	959168	959169	rs3845292	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p36.33	NR	rs3845292-?	NR	2E-6		0.0832192	[0.049-0.118] unit increase	NR [13958389] (imputed)	N
592	chr1	963012	963013	rs9442389	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	1p36.33	NR	rs9442389-?		5E-6		1.5151515	[NR]	Illumina [NR] (imputed)	N
592	chr1	968225	968226	rs3121560	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.33		rs3121560-A	0.34	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
592	chr1	985376	985377	rs113020870	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	1p36.33		rs113020870-?	NR	4E-8				Illumina [NR] (imputed)	N
592	chr1	990516	990517	rs2710872	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.33	NR	rs2710872-T	NR	3E-9		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
592	chr1	990516	990517	rs2710872	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.33	NR	rs2710872-T	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
592	chr1	995480	995481	rs9442393	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISG15	5,366 Icelandic ancestry individuals	NA	1p36.33		rs9442393-T	0.4447	2E-18		0.165803	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
592	chr1	1005805	1005806	rs3934834	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	1p36.33	NR	rs3934834-G	0.80	6E-7	(females + males)	0.11	[NR] kg increase	Illumina [318237]	N
593	chr1	1065295	1065296	rs4072537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.33	NR	rs4072537-C	NR	3E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr1	1079197	1079198	rs11260603	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p36.33	NR	rs11260603-C	0.217058243435692	4E-7	(IGP7)	0.2608	[0.16-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
593	chr1	1086178	1086179	rs61766352	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p36.33	NR	rs61766352-C	0.2787	3E-22		0.002376	[0.0019-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
593	chr1	1087682	1087683	rs9442380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p36.33	NR	rs9442380-C	NR	2E-9		0.0285	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
593	chr1	1087682	1087683	rs9442380	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p36.33	NR	rs9442380-T	0.07	9E-13		0.0265	[0.019-0.034] unit decrease	NR [NR]	N
593	chr1	1094978	1094979	rs7538773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p36.33	NR	rs7538773-A	NR	1E-17		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
593	chr1	1098420	1098421	rs12135382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p36.33		rs12135382-T	NR	1E-17		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
593	chr1	1110585	1110586	rs9442387	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	1p36.33		rs9442387-?	NR	8E-6	(ser_lg_lmp)	2.78		Illumina [11595112] (imputed)	N
593	chr1	1141386	1141387	rs11466681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.33		rs11466681-?	NR	1E-7				NR [~ 8900000] (imputed)	N
593	chr1	1144652	1144653	rs78021605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GALT6	5,358 Icelandic ancestry individuals	NA	1p36.33		rs78021605-A	0.09733	8E-16		0.243576	[0.18-0.3] unit decrease	Illumina [7506463] (imputed)	N
593	chr1	1146784	1146785	rs2298209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.33		rs2298209-?	NR	8E-8				NR [~ 8900000] (imputed)	N
593	chr1	1151972	1151973	rs75972122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p36.33		rs75972122-C	NR	6E-10		0.0717	[0.049-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
593	chr1	1151972	1151973	rs75972122	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p36.33	SDF4	rs75972122-C	0.151208	3E-8		0.07019056	[0.045-0.095] unit decrease	Affymetrix [7288503] (imputed)	N
593	chr1	1151972	1151973	rs75972122	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.33	SDF4, TNFRS4	rs75972122-C	0.151	2E-9		1.066	NR	Affymetrix [9154080] (imputed)	N
593	chr1	1162434	1162435	rs3766186	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.33	B3GALT6	rs3766186-C	0.8990625	6E-11	(B3GALT6, 7981_230_3)	0.2713308	[0.19-0.35] unit increase	Illumina [> 1000000] (imputed)	N
593	chr1	1173610	1173611	rs6697886	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.33	SDF4	rs6697886-?	NR	2E-10	(subset analysis)			Illumina [130052]	N
593	chr1	1178481	1178482	rs78555129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.33		rs78555129-?	NR	6E-11				NR [~ 8900000] (imputed)	N
593	chr1	1178924	1178925	rs12093154	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p36.33	C1QTNF12	rs12093154-A	NR	3E-9		0.84	[0.78-0.9]	Illumina [NR] (imputed)	N
593	chr1	1178924	1178925	rs12093154	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1p36.33	C1QTNF12	rs12093154-A	NR	4E-6		0.844	[0.77-0.92]	Illumina [5719137] (imputed)	N
594	chr1	1186501	1186502	rs6603785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.33		rs6603785-?	NR	2E-9				NR [~ 8900000] (imputed)	N
594	chr1	1186501	1186502	rs6603785	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p36.33	FAM132A, UBE2J2	rs6603785-?	NR	9E-6		1.1111112	[1.05-1.16]	Illumina [at least 5000000] (imputed)	N
594	chr1	1186820	1186821	rs140918627	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	1p36.33		rs140918627-?	NR	7E-6		4.48	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
594	chr1	1186820	1186821	rs140918627	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	1p36.33		rs140918627-?	NR	7E-6		4.5	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
594	chr1	1226311	1226312	rs150282282	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Platelet count	24,814 European ancestry individuals	6,526 European ancestry individuals	1p36.33	SCNN1D	rs150282282-T	1.0E-4	3E-6		8.0	[-27.89544-43.89544] unit increase	Illumina [183585]	N
594	chr1	1245367	1245368	rs11590283	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1p36.33	CPSF3L	rs11590283-?	NR	1E-7		1.1627907	[1.10-1.22]	Illumina [at least 5000000] (imputed)	N
594	chr1	1247493	1247494	rs12103	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p36.33	SCNN1D, CPSF3L, TAS1R3, RP4-758J18.2, MRPL20, UBE2J2, ACAP3, PUSL1, GLTPD1, DVL1, MXRA8, CCNL2, AURKAIP1	rs12103-?		3E-6				Illumina [9578670] (imputed)	N
594	chr1	1247493	1247494	rs12103	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p36.33	SCNN1D, CPSF3L, TAS1R3, RP4-758J18.2, MRPL20, UBE2J2, ACAP3, PUSL1, GLTPD1, DVL1, MXRA8, CCNL2, AURKAIP1	rs12103-?		2E-7				Illumina [9725440] (imputed)	N
594	chr1	1247493	1247494	rs12103	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.33	NR	rs12103-A	0.1834	1E-9	(EA)	1.1046834	[1.07-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
594	chr1	1247493	1247494	rs12103	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.33	NR	rs12103-A	0.1834	3E-11	(EA)	1.0906081	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
594	chr1	1247493	1247494	rs12103	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.33	NR	rs12103-A	0.1834	6E-7	(EA)	1.082054	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
594	chr1	1247493	1247494	rs12103	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.33	TNFRSF18, TNFRSF4	rs12103-A	0.182	8E-13		1.099	[1.059-1.139]	Affymetrix, Illumina [1230000] (imputed)	N
594	chr1	1254435	1254436	rs1886773	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p36.33	NADK, CPSF3L	rs1886773-A	0.03	2E-10		0.625	[0.43-0.82] unit decrease	Affymetrix [~ 9800000] (imputed)	N
594	chr1	1277182	1277183	rs61735963	32281736	Fan R	2020-04-13	Addict Biol	Gene-based association analysis reveals involvement of LAMA5 and cell adhesion pathways in nicotine dependence in African- and European-American samples.	Nicotine dependence	1,644 African American cases, 1,727 African American controls	852 Europen ancestry cases, 720 European ancestry controls	1p36.33	DVL1	rs61735963-?	0.2268	4E-6	(AA)	1.319		Illumina [up to 111643]	N
594	chr1	1280013	1280014	rs307359	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.33		rs307359-?	NR	3E-11				NR [~ 8900000] (imputed)	N
594	chr1	1287054	1287055	rs186507655	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	1p36.33	Intergenic	rs186507655-A	NR	5E-10	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
594	chr1	1301387	1301388	rs71628956	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p36.33	MXRA8, AURKAIP1	rs71628956-A	0.8769	1E-10		0.133	[0.091-0.175] unit increase	Affymetrix [~ 11900000] (imputed)	N
594	chr1	1302753	1302753	rs78389809	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p36.33	MXRA8, AURKAIP1	rs78389809-T	0.8892	1E-11		0.1539	[0.11-0.2] unit increase	Affymetrix [~ 11900000] (imputed)	N
594	chr1	1304142	1304143	rs36066545	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.33	AURKAIP1	rs36066545-G	0.875383	1E-9		0.0168405	[0.011-0.022] unit decrease	NR [13737936] (imputed)	N
594	chr1	1308385	1308386	rs12408050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	1p36.33		rs12408050-A	NR	4E-8		0.089	[0.057-0.121] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
594	chr1	1310073	1310074	rs2765035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	1p36.33		rs2765035-G	NR	5E-8		0.1194	[0.076-0.162] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
595	chr1	1337333	1337334	rs1171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.33		rs1171-?	NR	1E-8				NR [~ 8900000] (imputed)	N
595	chr1	1345188	1345189	rs138017690	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p36.33	NR	rs138017690-?	NR	7E-8		8759.263	NR unit decrease	Illumina [2379855]	N
595	chr1	1345995	1345996	rs1240716	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.33	MRPL20	rs1240716-T	0.7778	2E-8		0.4383	[0.29-0.59] mmHg increase	Affymetrix [NR] (imputed)	N
595	chr1	1376566	1376567	rs1240697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.33		rs1240697-?	NR	4E-12				NR [~ 8900000] (imputed)	N
595	chr1	1431805	1431806	rs1695847	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	1p36.33	ATAD3B	rs1695847-?	NR	7E-7		3.88	NR unit decrease	Illumina [> 13000000] (imputed)	N
596	chr1	1462478	1462479	rs41285834	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA1	5,360 Icelandic ancestry individuals	NA	1p36.33		rs41285834-T	0.01883	2E-68		1.17026	[1.04-1.3] unit decrease	Illumina [7506463] (imputed)	N
596	chr1	1486902	1486903	rs3766176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.33	NR	rs3766176-C	NR	2E-9		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
596	chr1	1489927	1489928	rs7366884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.33		rs7366884-C	NR	5E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
596	chr1	1537886	1537887	rs72634813	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p36.33		rs72634813-C	0.65	2E-9				NR [NR] (imputed)	N
596	chr1	1537886	1537887	rs72634813	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p36.33		rs72634813-C	0.65	2E-15		0.013	% increase	NR [NR] (imputed)	N
596	chr1	1548469	1548470	rs111610668	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p36.33	NR	rs111610668-G	0.3756	3E-11		0.017000824	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
596	chr1	1559970	1559971	rs12748433	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.33	MIB2	rs12748433-?	NR	1E-9		0.02087971	[0.014-0.028] unit decrease	Illumina [27896057] (imputed)	N
596	chr1	1561050	1561051	rs117489126	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		1p36.33	MIB2	rs117489126-T	0.019	7E-6		1.412	[0.81-2.02] unit increase	Illumina [640625] (imputed)	N
596	chr1	1561050	1561051	rs117489126	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		1p36.33	MIB2	rs117489126-T	0.0189102	4E-6		1.44391	[0.84-2.05] unit increase	Illumina [640625] (imputed)	N
596	chr1	1564193	1564194	rs3935032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p36.33		rs3935032-T	NR	2E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
597	chr1	1574708	1574709	rs28401288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.33		rs28401288-?	NR	6E-12				NR [~ 8900000] (imputed)	N
597	chr1	1576635	1576636	rs3765908	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p36.33	NADK, CPSF3L	rs3765908-A	0.70982205	2E-6		0.2281	[0.13-0.32] unit increase	Affymetrix [~ 9800000] (imputed)	N
597	chr1	1584191	1584192	rs4648606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.33		rs4648606-A	NR	3E-17		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
597	chr1	1590520	1590521	rs79113395	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.33	NR	rs79113395-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
597	chr1	1590520	1590521	rs79113395	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.33	NA	rs79113395-A	0.266	2E-20		0.02	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
597	chr1	1590520	1590521	rs79113395	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p36.33	NA	rs79113395-A	0.266	2E-20		0.02	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
597	chr1	1590680	1590681	rs9661500	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p36.33	NA	rs9661500-A	0.6933	6E-19		0.0183	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
597	chr1	1592637	1592638	rs115866895	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.33	SLC35E2B	rs115866895-A	0.736665	2E-14		0.0120194	[0.0089-0.0151] unit increase	Affymetrix [12370749]	N
597	chr1	1596499	1596500	rs72634819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.33		rs72634819-?	NR	1E-19				NR [~ 8900000] (imputed)	N
597	chr1	1598571	1598572	rs374715536	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.33	intergenic	rs374715536-G	0.9168	2E-12		0.4021	[0.29-0.51] mmHg increase	Affymetrix [NR] (imputed)	N
597	chr1	1599980	1599981	rs72634822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.33		rs72634822-T	NR	5E-15		0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
597	chr1	1615418	1615419	rs188187201	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p36.33	NR	rs188187201-?	NR	8E-7		4658.918	NR unit decrease	Illumina [2379855]	N
597	chr1	1628905	1628906	rs61776804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p36.33		rs61776804-A	NR	6E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
597	chr1	1655473	1655474	rs11486024	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (TRPSYN.PWY..L.tryptophan.biosynthesis)	7,738 European ancestry individuals	NA	1p36.33		rs11486024-G	0.54601527	4E-8		0.1082704	[0.07-0.147] unit decrease	Illumina [5584686] (imputed)	N
597	chr1	1663860	1663861	rs2294487	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.33	SLC35E2A	rs2294487-A	0.4105	6E-14		0.015	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
597	chr1	1680218	1680219	rs1014988	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.33	NADK	rs1014988-A	0.4781	2E-9		0.2039	[0.14-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
597	chr1	1681264	1681265	rs494264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p36.33		rs494264-G	NR	3E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
597	chr1	1685921	1685943	rs139385870	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	1p36.33	NADK, CPSF3L	rs139385870-?	0.5	1E-12		0.352	[0.25-0.45] unit decrease	Affymetrix [~ 9800000] (imputed)	N
597	chr1	1686039	1686040	rs4751	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p36.33	NADK	rs4751-T	0.42536799999999997	9E-9		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
597	chr1	1687481	1687482	rs2076328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.33		rs2076328-?	NR	2E-23				NR [~ 8900000] (imputed)	N
597	chr1	1692320	1692321	rs1107910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.33	NADK	rs1107910-C	0.45092	1E-9		0.013740778	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr1	1692320	1692321	rs1107910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.33	NADK	rs1107910-C	0.450915	5E-10		0.013985184	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr1	1693725	1693726	rs17162854	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	NADK	rs17162854-A	0.500138	6E-9	(118 ms)	0.0325861	[0.022-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
597	chr1	1693725	1693726	rs17162854	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	NADK	rs17162854-A	0.500138	4E-8	(116 ms)	0.0304694	[0.02-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
597	chr1	1693725	1693726	rs17162854	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	NADK	rs17162854-A	0.500138	2E-8	(156 ms)	0.0312028	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
597	chr1	1702435	1702436	rs12040325	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.33	NR	rs12040325-?	NR	7E-8		0.11874	[0.076-0.162] unit increase	Affymetrix [7794483] (imputed)	N
597	chr1	1702435	1702436	rs12040325	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.33	NR	rs12040325-?	NR	1E-7	(female)	0.12792	[0.081-0.175] unit increase	Affymetrix [7794483] (imputed)	N
598	chr1	1705944	1705945	rs11260629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.33		rs11260629-?	NR	3E-11				NR [~ 8900000] (imputed)	N
598	chr1	1708800	1708801	rs12044597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p36.33		rs12044597-G	NR	3E-11		0.011	[0.0079-0.0141] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
598	chr1	1708800	1708801	rs12044597	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p36.33	NADK	rs12044597-G	0.51	2E-9		0.014	[0.01-0.018] unit increase	Illumina [6108953] (imputed)	N
598	chr1	1723030	1723031	rs9660180	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p36.33	GNB1	rs9660180-A	0.499	8E-7	(EA)	0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
598	chr1	1723030	1723031	rs9660180	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p36.33	GNB1	rs9660180-A	0.491	6E-7		0.016	[0.0099-0.0229] kg/m2 increase	Affymetrix, Illumina [2550021]	N
598	chr1	1740254	1740255	rs7546498	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.33	GNB1	rs7546498-G		3E-11		0.257	unit increase	Affymetrix [at least 2696785] (imputed)	N
598	chr1	1740254	1740255	rs7546498	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.33	GNB1	rs7546498-G		5E-10		0.147	unit increase	Affymetrix [at least 2696785] (imputed)	N
598	chr1	1776268	1776269	rs4648727	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NADK	5,361 Icelandic ancestry individuals	NA	1p36.33		rs4648727-A	0.4714	1E-17		0.159103	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
598	chr1	1776268	1776269	rs4648727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.33		rs4648727-A	NR	6E-10		0.0102	[0.0071-0.0133] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
598	chr1	1808768	1808769	rs4648729	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.33	NADK	rs4648729-T	0.51234375	1E-8	(NADK, 13624_17_3)	0.14606133	[0.096-0.196] unit decrease	Illumina [> 1000000] (imputed)	N
599	chr1	1846072	1846073	rs2803298	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p36.33	NA	rs2803298-T	0.5398	2E-16		0.0141	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
599	chr1	1850427	1850428	rs2295363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.33		rs2295363-?	NR	4E-14				NR [~ 8900000] (imputed)	N
599	chr1	1853183	1853184	rs2748985	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p36.33	NR	rs2748985-?		4E-12		0.0153444	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
599	chr1	1864525	1864526	rs3121830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.33	NR	rs3121830-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
599	chr1	1865297	1865298	rs2803316	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.33	NA	rs2803316-A	0.4551	2E-16		0.0142	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
599	chr1	1865297	1865298	rs2803316	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p36.33	NA	rs2803316-A	0.4551	2E-16		0.0142	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
599	chr1	1874325	1874326	rs2803328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p36.33	PRKCZ, SKI, RER1, GNB1, CDK11A, C1orf233, VWA1, ATAD3C, MIB2, SLC35E2, CALML6, GABRD, C1orf86, MORN1, ATAD3B, MMP23B, NADK, TMEM52, LOC100129534, ATAD3A, MMP23A, PEX10, TMEM240, CDK11B, SSU72, SLC35E2B	rs2803328-C	0.494344757222724	3E-8		0.016034162	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
599	chr1	1881731	1881732	rs145840463	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p36.33	Intergenic	rs145840463-A	0.036	6E-6	(liability model)	0.21	[0.11-0.31] unit decrease	NR [19725427] (imputed)	N
599	chr1	1894283	1894284	rs4648739	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	1p36.33	KIAA1751	rs4648739-?	0.004664	8E-10		16.85	[5.027-56.46]	Affymetrix [547296]	N
600	chr1	2005908	2005909	rs13303058	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.33		rs13303058-T	0.03	3E-14		7.62	z score increase	Affymetrix [9061022] (imputed)	N
600	chr1	2005908	2005909	rs13303058	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.33		rs13303058-T	0.03	5E-10		6.21	z score increase	Affymetrix [9061022] (imputed)	N
600	chr1	2005908	2005909	rs13303058	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.33	PRKCZ	rs13303058-?		9E-9				NR [7428630] (imputed)	N
600	chr1	2016342	2016343	rs2678949	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p36.33	PRKCZ	rs2678949-A	0.304	2E-8		0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
600	chr1	2025538	2025539	rs12026498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.33	NR	rs12026498-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
600	chr1	2033373	2033374	rs3107137	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.33		rs3107137-A	0.47	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
600	chr1	2046937	2046938	rs3128339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.33		rs3128339-T	NR	5E-12		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
600	chr1	2059360	2059361	rs77602667	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Percent liver fat	269 African American individuals, 424 Japanese American individuals, 345 Latino individuals, 270 Native Hawaiian individuals, 382 European ancestry individuals	NA	1p36.33	NR	rs77602667-?	NR	5E-7		0.1605532	[0.098-0.223] unit decrease	Illumina [9789995] (imputed)	N
600	chr1	2069171	2069172	rs425277	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.33	PRKCZ	rs425277-T	0.28	2E-8		0.022	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
600	chr1	2069680	2069681	rs3753242	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	1p36.33	PRKCZ	rs3753242-?	0.06	1E-6	(risperidone)			Affymetrix [492900]	N
601	chr1	2115463	2115464	rs923254007	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	1p36.33		rs923254007-T	0.01019	8E-7		3.157	[2.0-4.982]	Affymetrix [7975321] (imputed)	N
601	chr1	2137367	2137368	rs2503712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.33		rs2503712-C	NR	5E-20		0.0124	[0.0099-0.0149] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-9	(-182 ms)	0.0509489	[0.033-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-9	(-180 ms)	0.0512555	[0.034-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-16	(-90 ms)	0.0704739	[0.053-0.088] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-15	(188 ms)	0.0657497	[0.049-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-14	(158 ms)	0.0627651	[0.046-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-11	(148 ms)	0.0543692	[0.037-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	9E-10	(-160 ms)	0.0545048	[0.037-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-9	(232 ms)	0.0489651	[0.032-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-13	(196 ms)	0.0588824	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-13	(176 ms)	0.059277	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-12	(156 ms)	0.0574661	[0.04-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-12	(150 ms)	0.0575122	[0.04-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-10	(222 ms)	0.0530459	[0.036-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-10	(-170 ms)	0.0541414	[0.037-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	8E-10	(-168 ms)	0.054947	[0.037-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-9	(144 ms)	0.0504332	[0.033-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-9	(142 ms)	0.0490382	[0.032-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-9	(-70 ms)	0.0517803	[0.034-0.069] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-17	(-94 ms)	0.0721982	[0.055-0.09] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-14	(184 ms)	0.0629274	[0.046-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	7E-14	(168 ms)	0.0636076	[0.047-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	6E-9	(230 ms)	0.049139	[0.032-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	6E-15	(166 ms)	0.0654554	[0.048-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	6E-14	(180 ms)	0.0618443	[0.045-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	6E-10	(224 ms)	0.0522983	[0.035-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	6E-10	(154 ms)	0.0523344	[0.035-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	5E-8	(-60 ms)	0.048828	[0.031-0.066] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	5E-12	(-82 ms)	0.0604178	[0.043-0.078] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-8	(-74 ms)	0.0492357	[0.032-0.067] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-8	(-152 ms)	0.0489957	[0.032-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-17	(-100 ms)	0.0727182	[0.055-0.09] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-13	(206 ms)	0.0599095	[0.043-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-13	(194 ms)	0.0591936	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-13	(190 ms)	0.0622244	[0.045-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-12	(208 ms)	0.0592383	[0.042-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-11	(212 ms)	0.0564541	[0.039-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-11	(152 ms)	0.0554188	[0.038-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	4E-10	(-80 ms)	0.0548957	[0.037-0.072] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-9	(-76 ms)	0.0521151	[0.035-0.07] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-8	(234 ms)	0.0479018	[0.031-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-8	(136 ms)	0.0475031	[0.03-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-8	(134 ms)	0.047152	[0.03-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-8	(-178 ms)	0.0493685	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-17	(-96 ms)	0.0725107	[0.055-0.09] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-16	(-104 ms)	0.0702208	[0.053-0.088] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-14	(-88 ms)	0.0664655	[0.049-0.084] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-13	(198 ms)	0.061191	[0.044-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-13	(182 ms)	0.0610709	[0.044-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-13	(-86 ms)	0.0639611	[0.046-0.081] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-12	(162 ms)	0.0591379	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-12	(-110 ms)	0.0599977	[0.043-0.077] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-11	(216 ms)	0.0566989	[0.039-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	3E-11	(-112 ms)	0.0564229	[0.039-0.074] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-9	(146 ms)	0.0508036	[0.034-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-9	(-174 ms)	0.0536636	[0.036-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-9	(-114 ms)	0.0513828	[0.034-0.069] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-62 ms)	0.0499036	[0.032-0.067] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-184 ms)	0.0493655	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-176 ms)	0.0503517	[0.033-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-158 ms)	0.0504665	[0.033-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-156 ms)	0.0496757	[0.032-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-8	(-154 ms)	0.0504723	[0.033-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-17	(-98 ms)	0.0727772	[0.055-0.09] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-16	(-92 ms)	0.071987	[0.055-0.089] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-15	(186 ms)	0.0663817	[0.049-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-15	(-106 ms)	0.0684208	[0.051-0.086] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-13	(200 ms)	0.0616727	[0.044-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-13	(192 ms)	0.0606164	[0.043-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-13	(164 ms)	0.061301	[0.044-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-13	(-84 ms)	0.0646376	[0.047-0.082] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-13	(-108 ms)	0.0639083	[0.047-0.081] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	2E-10	(-166 ms)	0.0563207	[0.039-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-9	(228 ms)	0.0512899	[0.034-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-9	(-78 ms)	0.0541636	[0.037-0.072] unit increase	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-9	(-172 ms)	0.0542422	[0.037-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-13	(178 ms)	0.0612444	[0.044-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-13	(160 ms)	0.0622395	[0.045-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-12	(204 ms)	0.0588732	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-12	(202 ms)	0.0596606	[0.042-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-12	(172 ms)	0.0582524	[0.041-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-12	(170 ms)	0.0593635	[0.042-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-11	(214 ms)	0.0572264	[0.04-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-11	(210 ms)	0.0575613	[0.04-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-11	(174 ms)	0.0575697	[0.04-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-11	(-164 ms)	0.0595262	[0.042-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-11	(-162 ms)	0.0599855	[0.043-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-10	(220 ms)	0.0544289	[0.037-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.33	C1orf86	rs2503715-A	0.12399	1E-10	(218 ms)	0.0552148	[0.038-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p36.33	SKI	rs2503715-G	0.8653	1E-51		1.5966	[1.39-1.8] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
601	chr1	2144106	2144107	rs2503715	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p36.33	FAAP20	rs2503715-A	0.13	4E-10	(men)	0.072	[0.048-0.096] unit decrease	Affymetrix [~ 9000000] (imputed)	N
601	chr1	2144106	2144107	rs2503715	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	1p36.33	AL590822.1	rs2503715-G	0.878	1E-10		2.221	[1.55-2.89] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
601	chr1	2144787	2144788	rs262695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.33		rs262695-?	NR	8E-8				NR [~ 8900000] (imputed)	N
601	chr1	2144981	2144982	rs2480714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p36.33		rs2480714-T	NR	6E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
601	chr1	2146164	2146165	rs78265569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs78265569-A	0.087977	2E-13		0.028861264	[0.021-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr1	2146164	2146165	rs78265569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs78265569-A	0.087981	4E-10		0.0235024	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
601	chr1	2146164	2146165	rs78265569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p36.33	NR	rs78265569-A	0.087825	2E-10		0.022871	[0.016-0.03] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
601	chr1	2146164	2146165	rs78265569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.33	RP11-181G12.4	rs78265569-A	0.0894	5E-10		0.04037569	[0.028-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr1	2146164	2146165	rs78265569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p36.33	RP11-181G12.4	rs78265569-A	0.0894	2E-12		0.04578347	[0.033-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
601	chr1	2147873	2147874	rs10910028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs10910028-G	0.073735	3E-24		0.043668732	[0.035-0.052] unit increase	Affymetrix [93095623] (imputed)	N
601	chr1	2147873	2147874	rs10910028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs10910028-G	0.073743	1E-26		0.045832913	[0.037-0.054] unit increase	Affymetrix [93095623] (imputed)	N
601	chr1	2147873	2147874	rs10910028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs10910028-G	0.0737370000000001	2E-19		0.038663123	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
601	chr1	2147873	2147874	rs10910028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.33	RP11-181G12.4	rs10910028-G	0.073735	2E-21		0.040770367	[0.032-0.049] unit increase	Affymetrix [93095623] (imputed)	N
601	chr1	2153934	2153935	rs188060308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.33	NR	rs188060308-C	0.069858	3E-10		0.025094	[0.017-0.033] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
601	chr1	2156361	2156362	rs2460000	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p36.33	NR	rs2460000-A	0.34	6E-11		0.0128	[0.0089-0.0167] unit decrease	NR [NR]	N
601	chr1	2156998	2156999	rs2480712	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p36.33	SKI	rs2480712-C	0.6621	6E-9		0.024325	[0.016-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
601	chr1	2157947	2157948	rs1692580	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p36.33	SKI	rs1692580-T	0.567	2E-7		0.034	[0.022-0.046] unit increase	Affymetrix [7947838] (imputed)	N
601	chr1	2160389	2160390	rs28384811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p36.33		rs28384811-G	NR	2E-14		0.0327	[0.024-0.041] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
601	chr1	2163567	2163568	rs263533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p36.33		rs263533-?	NR	9E-8				NR [~ 8900000] (imputed)	N
601	chr1	2164698	2164699	rs377599	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.33	SKI	rs377599-T	0.383	3E-29		0.0217	[0.018-0.025] unit increase	Affymetrix [18391927] (imputed)	N
601	chr1	2164698	2164699	rs377599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.33		rs377599-?	NR	3E-26				NR [~ 8900000] (imputed)	N
601	chr1	2166405	2166406	rs61776614	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	1p36.33	FAAP20	rs61776614-C	0.925	5E-8		0.05	[0.032-0.068] SD units increase	NR [9926106] (imputed)	N
601	chr1	2166484	2166484	rs560221037	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p36.33	NR	rs560221037-A	0.619607	6E-12		0.0135788	[0.0097-0.0174] unit increase	Affymetrix [15000001]	N
601	chr1	2166607	2166607	rs34646035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.33	SKI	rs34646035-GT	0.502819	5E-24		0.022752644	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr1	2166607	2166607	rs34646035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.33	SKI	rs34646035-GT	0.502792	8E-31		0.025898127	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr1	2166808	2166809	rs76875252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.33		rs76875252-?	NR	3E-8				NR [~ 8900000] (imputed)	N
601	chr1	2172987	2172988	rs263527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.33	NR	rs263527-C	0.58645	4E-33				Affymetrix, Illumina [24588908] (imputed)	N
601	chr1	2172987	2172988	rs263527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.33	NR	rs263527-C	0.502607	1E-36		0.024167	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
601	chr1	2175552	2175553	rs142451335	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p36.33	SKI	rs142451335-T	0.072	2E-9		5.99	z-score increase	Affymetrix [4312306] (imputed)	N
601	chr1	2176125	2176126	rs11582968	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p36.33	SKI	rs11582968-T	0.927232	2E-15		0.00598949	[0.0045-0.0075] unit decrease	Affymetrix [13995440] (imputed)	N
601	chr1	2176560	2176561	rs116374150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.33		rs116374150-T	NR	2E-15		0.0333	[0.025-0.042] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
601	chr1	2184637	2184638	rs76154380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.33		rs76154380-?	NR	9E-17				NR [~ 8900000] (imputed)	N
601	chr1	2186114	2186115	rs77797313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.33	NR	rs77797313-A	NR	8E-10		0.0384	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
601	chr1	2186114	2186115	rs77797313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.33	NR	rs77797313-A	NR	4E-9		0.0366	[0.024-0.049] unit increase	Affymetrix [9000000] (imputed)	N
601	chr1	2187084	2187085	rs260508	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p36.33	SKI	rs260508-T	0.6135	5E-9		0.1485	[0.099-0.198] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
601	chr1	2202966	2202967	rs903908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.33		rs903908-C	NR	6E-25		0.0221	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
601	chr1	2202966	2202967	rs903908	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.33		rs903908-T	0.49	4E-19				Affymetrix [10369434] (imputed)	N
601	chr1	2204789	2204790	rs4648819	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	1p36.33	SKI	rs4648819-G	0.11	5E-10		1.7	[1.15-2.25] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
601	chr1	2205526	2205527	rs10910045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p36.33		rs10910045-G	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
601	chr1	2205580	2205581	rs12045693	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p36.33	NR	rs12045693-C	0.573032700580098	3E-6	(IGP56)	0.1539	[0.089-0.219] unit decrease	Illumina [~ 2500000] (imputed)	N
602	chr1	2233960	2233961	rs11576356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p36.32	SKI	rs11576356-A	0.1787	2E-10		0.02989036	[0.021-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr1	2234040	2234043	rs141190925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.32	SKI	rs141190925-C	0.178374	9E-29		0.03232787	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr1	2237247	2237248	rs11580302	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1p36.32		rs11580302-?	NR	5E-8				Affymetrix [NR] (imputed)	N
602	chr1	2245569	2245570	rs2843152	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p36.32	MORN1, SKI	rs2843152-C	0.2927	3E-8		0.0406	[0.026-0.055] unit increase	NR [8041861] (imputed)	N
602	chr1	2246512	2246513	rs61762079	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p36.32	SKI, MORN1	rs61762079-A	0.285479	4E-7		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
602	chr1	2251118	2251119	rs12081179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.32		rs12081179-?	NR	3E-8				NR [~ 8900000] (imputed)	N
602	chr1	2252190	2252191	rs72920928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p36.32		rs72920928-G	NR	4E-8		0.0318	[0.02-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
602	chr1	2252204	2252205	rs36096196	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p36.32	MORN1	rs36096196-T	0.1483	1E-8		0.0469	[0.031-0.063] unit increase	Affymetrix [at least 7947838] (imputed)	N
602	chr1	2252204	2252205	rs36096196	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p36.32	MORN1	rs36096196-T	0.148	1E-8		0.053	[0.035-0.071] unit increase	Affymetrix [7947838] (imputed)	N
602	chr1	2286166	2286167	rs145844325	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	1p36.32		rs145844325-A	0.01499	6E-6		2.56	[1.702-3.852]	Affymetrix [7975321] (imputed)	N
602	chr1	2300556	2300557	rs56117848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.32	NR	rs56117848-A	0.21047	9E-12		0.01623	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
602	chr1	2300556	2300557	rs56117848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs56117848-A	0.171199	6E-10				Affymetrix, Illumina [20825802] (imputed)	N
602	chr1	2300556	2300557	rs56117848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.32	NR	rs56117848-A	0.210636	4E-12		0.016742	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
602	chr1	2303565	2303566	rs2840534	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	1p36.32	MORN1	rs2840534-?	NR	7E-6				Illumina [1940243] (imputed)	N
602	chr1	2306971	2306972	rs7519807	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.32	RER1	rs7519807-?	NR	4E-6	(TAG 48:0)	0.19381832	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
602	chr1	2315031	2315032	rs115217673	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.32	NR	rs115217673-A	0.01916	3E-11	(LAMP2)	0.01162	NR unit increase	Illumina [1671387] (imputed)	N
602	chr1	2315679	2315680	rs2843128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	1p36.32		rs2843128-A	0.481914	3E-9		0.0235227	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
602	chr1	2320701	2320702	rs4648633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.32		rs4648633-?	NR	4E-8				NR [~ 8900000] (imputed)	N
602	chr1	2323040	2323041	rs77804600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.32		rs77804600-?	NR	8E-9				NR [~ 8900000] (imputed)	N
602	chr1	2326008	2326009	rs1123571	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p36.32	RER1	rs1123571-A	0.46	8E-16		8.05	z-score increase	Affymetrix [4311822] (imputed)	N
602	chr1	2326811	2326812	rs903911	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	1p36.32		rs903911-G	0.46	3E-18		0.0288	[0.022-0.035] unit increase	NR [8806780] (imputed)	N
602	chr1	2326811	2326812	rs903911	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	1p36.32		rs903911-G	0.46	5E-10		0.0157	[0.011-0.021] unit decrease	NR [6098063] (imputed)	N
602	chr1	2329660	2329661	rs6698680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p36.32		rs6698680-A	0.538027	1E-10		0.0255062	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
602	chr1	2329660	2329661	rs6698680	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p36.32	NR	rs6698680-G	0.464195	9E-10		0.011928	[0.0081-0.0157] unit decrease	Affymetrix [16668957] (imputed)	N
602	chr1	2330015	2330016	rs6685829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p36.32		rs6685829-T	NR	4E-14		0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
602	chr1	2330189	2330190	rs6693447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	1p36.32		rs6693447-T	0.538299	3E-10		0.0250996	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
602	chr1	2330189	2330190	rs6693447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	1p36.32		rs6693447-T	0.538299	2E-8		0.0222705	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
602	chr1	2330189	2330190	rs6693447	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.32	PEX10	rs6693447-T	0.537941	3E-21		0.00213589	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
602	chr1	2330189	2330190	rs6693447	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	1p36.32	RER1	rs6693447-T	0.551	6E-10		0.039	[0.027-0.051] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
602	chr1	2338125	2338126	rs3795269	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p36.32		rs3795269-C	0.561382	1E-8		0.0219196	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
602	chr1	2338125	2338126	rs3795269	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p36.32		rs3795269-C	0.561382	6E-9		0.0225336	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
602	chr1	2338125	2338126	rs3795269	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p36.32		rs3795269-C	0.561382	5E-8		0.020857	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
602	chr1	2339138	2339139	rs6671730	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1p36.32		rs6671730-G	0.565714	8E-14		0.015	[0.011-0.019] unit decrease	NR [7250403] (imputed)	N
602	chr1	2339394	2339395	rs2494429	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p36.32		rs2494429-?	NR	3E-8		0.0148459	[0.0096-0.0201] unit increase	NR [6912294] (imputed)	N
603	chr1	2379704	2379705	rs942820	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p36.32	NR	rs942820-?	NR	3E-9		1.0645999	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
603	chr1	2380278	2380279	rs10910076	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	1p36.32	NR	rs10910076-A	0.9927	1E-9		0.648	[0.44-0.86] unit decrease	Illumina [~ 10600000] (imputed)	N
603	chr1	2387100	2387101	rs4648845	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1p36.32	NR	rs4648845-?	NR	6E-9				Illumina [up to 5582932] (imputed)	N
603	chr1	2387100	2387101	rs4648845	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1p36.32	PLCH2	rs4648845-?	NR	7E-12		1.0799136	[1.06-1.10]	Illumina [8000000] (imputed)	N
603	chr1	2387100	2387101	rs4648845	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p36.32	NR	rs4648845-T	NR	2E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
603	chr1	2387100	2387101	rs4648845	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1p36.32	PLCH2	rs4648845-T	0.527	9E-10		1.072	[1.049-1.097]	Affymetrix, Illumina [9005918] (imputed)	N
603	chr1	2387714	2387715	rs12037821	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	BMI x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p36.32	NR	rs12037821-T	NR	1E-7		3.10609	[1.96-4.25] unit increase	Illumina [NR] (imputed)	N
603	chr1	2392647	2392648	rs2477686	22197933	Hu Z	2011-12-25	Nat Genet	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls	1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls	1p36.32	MMEL1, PEX10	rs2477686-?	NR	6E-12		1.39	[1.26-1.52]	Affymetrix [587347]	N
603	chr1	2420912	2420913	rs6668720	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.32	PLCH2	rs6668720-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
603	chr1	2427711	2427712	rs3762444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.32		rs3762444-?	NR	2E-14				NR [~ 8900000] (imputed)	N
603	chr1	2444413	2444414	rs7535528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.32		rs7535528-?	NR	6E-11				NR [~ 8900000] (imputed)	N
603	chr1	2444413	2444414	rs7535528	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p36.32	NR	rs7535528-G	NR	1E-6		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
603	chr1	2444413	2444414	rs7535528	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	1p36.32	PLCH2	rs7535528-A	0.362619	2E-8		5.62	z score increase	NR [~ 10847151] (imputed)	N
603	chr1	2444413	2444414	rs7535528	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p36.32	GABRD, C1orf86, MORN1, PLCH2, MMEL1, ACTRT2, PRKCZ, SKI, RER1, TTC34, LOC100129534, HES5, PEX10, LOC115110, LOC100133445, TNFRSF14, FAM213B	rs7535528-A	0.369822238702627	4E-8		0.018895956	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
603	chr1	2452978	2452979	rs12073504	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	PANK4	rs12073504-G	0.033	5E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
603	chr1	2483960	2483961	rs2258734	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1p36.32		rs2258734-A	NR	6E-14		0.91	[0.89-0.93]	NR [13810676] (imputed)	N
603	chr1	2487662	2487663	rs2227312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.32		rs2227312-?	NR	9E-16				NR [~ 8900000] (imputed)	N
603	chr1	2487765	2487766	rs2227313	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs2227313-C	0.57613	5E-11		0.2584	[0.18-0.33] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2487766	2487767	rs565201292	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Terminally Differentiated CD4+ T cell	1,245 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs565201292-G	0.5739000000000001	3E-9		0.2375	[0.16-0.32] unit increase	Illumina [16405275] (imputed)	N
603	chr1	2488152	2488153	rs4870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.32	TNFRSF14	rs4870-G	0.48206	2E-11		0.014808228	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr1	2488152	2488153	rs4870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.32	TNFRSF14	rs4870-G	0.482017	1E-11		0.0149513325	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
603	chr1	2488152	2488153	rs4870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.32	NR	rs4870-G	0.481583	4E-13		0.014422	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	7E-13		0.2864	[0.21-0.36] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Effector Memory CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	9E-13		0.2857	[0.21-0.36] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Central Memory CD8+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	2E-15		0.3092	[0.23-0.38] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Central Memory CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	2E-13		0.2857	[0.21-0.36] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on CD45RA- CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	2E-14		0.3004	[0.22-0.38] unit increase	Illumina [16410374] (imputed)	N
603	chr1	2488607	2488608	rs1886730	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs1886730-C	0.57786	6E-14		0.2928	[0.22-0.37] unit increase	Illumina [16410374] (imputed)	N
604	chr1	2491204	2491205	rs2234161	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.32	TNFRSF14	rs2234161-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
604	chr1	2494329	2494330	rs2234167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p36.32		rs2234167-A	NR	2E-10		0.0833	[0.058-0.109] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
604	chr1	2494329	2494330	rs2234167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p36.32		rs2234167-A	NR	4E-8		0.0825	[0.053-0.112] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
604	chr1	2494329	2494330	rs2234167	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p36.32	TNFRSF14	rs2234167-A	0.133	2E-11		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
604	chr1	2494329	2494330	rs2234167	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p36.32	TNFRSF14	rs2234167-A	0.133222	9E-10		0.08178484	[0.056-0.108] unit increase	Affymetrix [7288503] (imputed)	N
604	chr1	2494329	2494330	rs2234167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.32		rs2234167-?	NR	4E-11				NR [~ 8900000] (imputed)	N
604	chr1	2498861	2498862	rs1555791	26398853	Ye BD	2016-01-01	Inflamm Bowel Dis	Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans.	Ulcerative colitis	705 Korean ancestry cases, 1,178 Korean ancestry controls	980 Korean ancestry cases, 2,694 Korean ancestry controls	1p36.32	TNFRSF14	rs1555791-C	0.48	2E-6		1.22		Illumina [536821] (imputed)	N
604	chr1	2501221	2501222	rs10797431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	1p36.32		rs10797431-T	NR	1E-8		0.074	[0.049-0.099] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
604	chr1	2501221	2501222	rs10797431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	1p36.32		rs10797431-?	NR	1E-11				NR [~ 8900000] (imputed)	N
604	chr1	2501221	2501222	rs10797431	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	1p36.32	MMEL1	rs10797431-?		2E-10		1.1904762		Illumina [at least 8143088] (imputed)	N
604	chr1	2501337	2501338	rs10797432	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p36.32	FAM213B, MMEL1, TNFRSF14	rs10797432-?		1E-10				Illumina [9578670] (imputed)	N
604	chr1	2501337	2501338	rs10797432	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p36.32	FAM213B, MMEL1, TNFRSF14	rs10797432-?		8E-7				Illumina [9725440] (imputed)	N
604	chr1	2501337	2501338	rs10797432	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p36.32	MMEL1, PLCH2, TNFRSF14	rs10797432-C	0.522	3E-12		1.078	[1.041-1.116]	Affymetrix, Illumina [1230000] (imputed)	N
604	chr1	2501515	2501516	rs10910092	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.32	NR	rs10910092-?	NR	1E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr1	2502779	2502780	rs6667605	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p36.32	NA	rs6667605-T	0.495	1E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
604	chr1	2502779	2502780	rs6667605	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.32	NR	rs6667605-G	0.51	3E-10	(EA)	1.0831845		Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr1	2502779	2502780	rs6667605	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.32	NR	rs6667605-G	0.51	1E-6	(EA)	1.0500121		Affymetrix, Illumina [~ 9000000] (imputed)	N
604	chr1	2503575	2503575	rs201394395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.32		rs201394395-CTT	NR	4E-8		0.0097	[0.0062-0.0132] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
604	chr1	2504233	2504234	rs6671426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs6671426-A	0.495417	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
604	chr1	2510754	2510755	rs10910095	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.32	NR	rs10910095-G	0.8659	4E-13		1.0658708	[1.05-1.08]	Affymetrix [15688218] (imputed)	N
604	chr1	2510754	2510755	rs10910095	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1p36.32	NR	rs10910095-G	0.8659	4E-13		1.0602206	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
604	chr1	2510754	2510755	rs10910095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.32		rs10910095-?	NR	5E-12				NR [~ 8900000] (imputed)	N
604	chr1	2510754	2510755	rs10910095	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1p36.32	TNFRSF14, FAM213B	rs10910095-G	0.84	3E-8		1.042	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
604	chr1	2513215	2513216	rs734999	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.32	LOC100996583	rs734999-C	0.51	1E-9				NR [> 9500000] (imputed)	N
604	chr1	2513215	2513216	rs734999	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.32	MMEL1, PLCH2, C1orf93, TNFRSF14	rs734999-C	0.52	3E-9		1.05	[1.01-1.09]	Affymetrix, Illumina [~ 1100000] (imputed)	N
604	chr1	2513677	2513678	rs2016366	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p36.32	LOC100996583	rs2016366-A	0.508245	4E-11		1.0405252	[1.0283539943951-1.05284036011966]	NR [9572556] (imputed)	N
604	chr1	2516780	2516781	rs60733400	28445677	Steri M	2017-04-27	N Engl J Med	Overexpression of the Cytokine BAFF and Autoimmunity Risk.	Multiple sclerosis	2,273 Sardinian cases, 2,148 Sardinian controls	6,840 European ancestry cases, 661 Sardinian cases, 3,176 cases, 6,044 European ancestry controls, 1,244 Sardinian controls, 2,958 controls	1p36.32	TNFRSF14	rs60733400-G	0.702	1E-6		1.27		Affymetrix [~ 12200000] (imputed)	N
604	chr1	2520301	2520302	rs6667564	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	1p36.32		rs6667564-C	0.45	5E-6		0.34	unit increase	Affymetrix [NR] (imputed)	N
604	chr1	2520301	2520302	rs6667564	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	1p36.32		rs6667564-C	0.45	5E-6		0.5	unit increase	Affymetrix [NR] (imputed)	N
604	chr1	2520526	2520527	rs6670198	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p36.32	FAM213B	rs6670198-T	NR	2E-36		1.1367512	NR	Affymetrix, Illumina [8278136] (imputed)	N
604	chr1	2523722	2523723	rs867436	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1p36.32		rs867436-T	NR	3E-9		0.134167	[0.09-0.178] unit increase	NR [5054572] (imputed)	N
604	chr1	2523810	2523811	rs187786174	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.32	TNFRSF14, MMEL1	rs187786174-A	NR	4E-14		0.118338	[0.088-0.149] unit decrease	Illumina [8380626] (imputed)	N
604	chr1	2523810	2523811	rs187786174	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.32	TNFRSF14, MMEL1	rs187786174-A	0.3	2E-10	(EA)	0.11442	[0.079-0.15] unit decrease	Illumina [8380626] (imputed)	N
604	chr1	2525664	2525665	rs3748817	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p36.32	MMEL1	rs3748817-A	0.65	1E-26		1.14		Illumina [161311]	N
604	chr1	2526745	2526746	rs3748816	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	1p36.32	MMEL1	rs3748816-A	0.66	5E-13		1.2	[1.14-1.26]	Affymetrix, Illumina [7891602] (imputed)	N
604	chr1	2526745	2526746	rs3748816	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	1p36.32	MMEL1, TNFRSF14	rs3748816-A	0.656	7E-12		1.21	[1.14-1.27]	Illumina [140322] (imputed)	N
604	chr1	2526745	2526746	rs3748816	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.32	MMEL1, TNFRSF14	rs3748816-?	0.66	3E-9		1.12	[1.09-1.18]	Illumina [292387]	N
604	chr1	2528132	2528133	rs2843401	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1p36.32	MMEL1	rs2843401-G	0.68	7E-12		1.1235955	[1.09-1.16]	Illumina [133816] (imputed)	N
604	chr1	2528132	2528133	rs2843401	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.32	MMEL1	rs2843401-?	0.67	7E-10		1.1444267	(Immunochip only)	Illumina [129464] (imputed)	N
604	chr1	2528132	2528133	rs2843401	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.32	MMEL1	rs2843401-?	0.67	4E-8		1.1043622	(Immunochip only)	Illumina [129464] (imputed)	N
604	chr1	2529096	2529097	rs2843403	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	1p36.32	MMEL1, TNFRSF1	rs2843403-C	0.638	8E-7		1.1904762	[1.11-1.27]	Illumina [103875]	N
604	chr1	2529096	2529097	rs2843403	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	1p36.32	MMEL1, TNFRSF1	rs2843403-C	0.638	6E-6		1.1627907	[1.09-1.23]	Illumina [103875]	N
604	chr1	2534977	2534978	rs6664969	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	1p36.32	MMEL1	rs6664969-?	0.67	1E-8		1.1078187		Illumina [252970]	N
604	chr1	2534977	2534978	rs6664969	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	1p36.32	MMEL1	rs6664969-?		1E-8		1.1169313		Illumina [252970]	N
604	chr1	2534977	2534978	rs6664969	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	1p36.32	MMEL1	rs6664969-A	NA	3E-10				Illumina [252970]	N
604	chr1	2539399	2539400	rs4445406	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1p36.32	C1orf93, MMEL1, TTC34	rs4445406-T	0.656	5E-12		1.1494253		Illumina [139553]	N
604	chr1	2539795	2539796	rs4073285	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	1p36.32	MMEL1	rs4073285-?	NR	2E-13		0.9		Illumina [109572]	N
604	chr1	2553623	2553624	rs3890745	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or rheumatoid arthritis	3,617 European ancestry diffuse large B-cell lymphoma cases, 3,921 European ancestry rheumatoid arthritis cases, 11,516 European ancestry controls	NA	1p36.32	MMEL1	rs3890745-?	NR	2E-8		1.1441647		Illumina [~ 600000] (imputed)	N
604	chr1	2553623	2553624	rs3890745	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	1p36.32	TNFRSF14	rs3890745-?		1E-6		1.18	[1.1-1.27]	Affymetrix, Illumina [1831729] (imputed)	N
604	chr1	2553623	2553624	rs3890745	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p36.32	TNFRSF14	rs3890745-T	0.68	4E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2716259] (imputed)	N
604	chr1	2553623	2553624	rs3890745	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	1p36.32	MMEL1, TNFRSF14	rs3890745-T	0.67	1E-7		1.12	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
604	chr1	2555639	2555640	rs28568531	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1p36.32		rs28568531-A	NR	4E-8		0.109007	[0.07-0.148] unit increase	NR [2787054] (imputed)	N
604	chr1	2584094	2584095	rs4648664	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p36.32	NR	rs4648664-C	0.4567	6E-10		0.015424865	[0.011-0.02] unit decrease	Affymetrix [10549349] (imputed)	N
605	chr1	2709163	2709164	rs4648356	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p36.32	MMEL1	rs4648356-C	NR	1E-14		1.14	[1.12-1.16]	Illumina [465434]	N
605	chr1	2723213	2723214	rs4648450	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.32	TTC34	rs4648450-C	0.533103	1E-12		0.0098008	[0.0071-0.0125] unit increase	Affymetrix [12370749]	N
605	chr1	2723213	2723214	rs4648450	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.32	NR	rs4648450-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
605	chr1	2725474	2725475	rs7537581	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.32	NA	rs7537581-A	0.53	6E-16		0.0138	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
605	chr1	2728290	2728291	rs534031095	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Central Memory CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.32		rs534031095-A	0.00514	5E-8		1.564	[1.01-2.12] unit decrease	Illumina [16410374] (imputed)	N
606	chr1	2775952	2775953	rs76244841	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 30)	3,566 European ancestry individuals	4,680 European ancestry individuals	1p36.32		rs76244841-A	0.416613824	1E-8				Illumina [7417619] (imputed)	N
606	chr1	2779759	2779760	rs28600853	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	1p36.32	TTC34, PRDM16	rs28600853-G	0.011	6E-6	(IAA-first)	3.233		Illumina [131847]	N
606	chr1	2784615	2784616	rs7546616	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs7546616-?	NR	6E-9	(right precuneus)			NR [9227495] (imputed)	N
606	chr1	2791890	2791891	rs6656067	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.32	NR	rs6656067-C	0.4724	1E-17				NR [9056863] (imputed)	N
606	chr1	2791890	2791891	rs6656067	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs6656067-?	NR	1E-8	(right precuneus)			NR [9227495] (imputed)	N
606	chr1	2792114	2792115	rs12131450	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.32		rs12131450-T	0.46	8E-99		21.1	z score increase	Affymetrix [9061022] (imputed)	N
606	chr1	2797855	2797856	rs10797342	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p36.32		rs10797342-?	NR	6E-29				NR [9705931] (imputed)	N
606	chr1	2797855	2797856	rs10797342	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.32	NR	rs10797342-?		3E-14				NR [7428630] (imputed)	N
606	chr1	2798711	2798712	rs4373707	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.32		rs4373707-T	0.47	2E-22		9.76	z score increase	Affymetrix [9061022] (imputed)	N
606	chr1	2798711	2798712	rs4373707	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.32		rs4373707-T	0.47	2E-37		12.78	z score increase	Affymetrix [9061022] (imputed)	N
606	chr1	2798711	2798712	rs4373707	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.32	NR	rs4373707-T	0.4675	1E-17				NR [9056863] (imputed)	N
606	chr1	2799479	2799480	rs11580768	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p36.32	PRKCZ	rs11580768-?		1E-14				NR [7428630] (imputed)	N
606	chr1	2799479	2799480	rs11580768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.32		rs11580768-?	NR	2E-12				NR [~ 8900000] (imputed)	N
606	chr1	2811426	2811427	rs138446575	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Invasive cervical cancer	764 European ancestry cases, 145,545 European ancestry controls	NA	1p36.32	TTC34	rs138446575-?	NR	5E-8		2.39	[1.57-3.27]	Affymetrix [9600464] (imputed)	N
606	chr1	2811813	2811814	rs1456465	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Serum total cholesterol levels	6,545 European ancestry individuals	NA	1p36.32		rs1456465-G	0.16	7E-8		0.16	[0.12-0.26] unit decrease	Illumina [19468843] (imputed)	N
606	chr1	2819306	2819307	rs79316815	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	1p36.32		rs79316815-A	0.16	3E-7		0.16	[0.12-0.26] unit decrease	Illumina [19468843] (imputed)	N
606	chr1	2864014	2864015	rs12028979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.32		rs12028979-?	NR	2E-11				NR [~ 8900000] (imputed)	N
606	chr1	2878365	2878366	rs11583804	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	1p36.32	TTC34, ACTRT2	rs11583804-A	0.5708	7E-6		0.093	[0.052-0.134] unit increase	NR [NR] (imputed)	N
606	chr1	2882482	2882483	rs115353340	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	1p36.32		rs115353340-C	0.988	4E-6		0.704	[0.608-0.815]	Affymetrix, Illumina [NR] (imputed)	N
607	chr1	2887219	2887220	rs117105675	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p36.32	TTC34, ACTRT2	rs117105675-T	0.011408293	4E-6		1.5711766	[1.298024041-1.901810783]	Illumina [10439017] (imputed)	N
607	chr1	2887468	2887469	rs12727338	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	1p36.32	ACTRT2	rs12727338-A	NR	5E-6		2.39409	[1.42-3.37] unit increase	Illumina [NR] (imputed)	N
607	chr1	2904633	2904634	rs139603701	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.32	ACTRT2	rs139603701-A	0.985074	7E-47		0.106409	[0.092-0.121] unit increase	NR [13737936] (imputed)	N
607	chr1	2904633	2904634	rs139603701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.32		rs139603701-?	NR	1E-43				NR [~ 8900000] (imputed)	N
607	chr1	2904633	2904634	rs139603701	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.32		rs139603701-?	NR	2E-38		0.104629	[0.088-0.121] unit increase	Affymetrix [20259828] (imputed)	N
607	chr1	2904633	2904634	rs139603701	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.32	ACTRT2	rs139603701-A	0.982754	1E-6	(men)	0.0965936	[0.057-0.136] unit increase	NR [17166351] (imputed)	N
607	chr1	2904633	2904634	rs139603701	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.32	ACTRT2	rs139603701-A	0.982645	6E-14		0.0963293	[0.07-0.122] unit increase	NR [17166351] (imputed)	N
607	chr1	2904633	2904634	rs139603701	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.32	ACTRT2	rs139603701-A	0.982549	1E-7	(women)	0.101128	[0.065-0.137] unit increase	NR [17166351] (imputed)	N
607	chr1	2917459	2917460	rs10797374	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p36.32	TTC34, ACTRT2	rs10797374-?	NR	6E-12		0.0455701	[0.033-0.059] unit decrease	Illumina [4804024] (imputed)	N
607	chr1	2917471	2917472	rs10797376	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p36.32	PRDM16	rs10797376-A	0.874726	1E-6		1.06	[1.03-1.08]	NR [8126035] (imputed)	N
607	chr1	2936814	2936815	rs10909862	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p36.32	ACTRT2	rs10909862-A	0.789	2E-7		0.043	[0.027-0.059] unit increase	Affymetrix [7947838] (imputed)	N
607	chr1	2973432	2973433	rs2993481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.32	LINC00982	rs2993481-T	NR	3E-11		0.0239756	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
607	chr1	2973432	2973433	rs2993481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.32	LINC00982	rs2993481-T	NR	5E-11		0.02369	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
607	chr1	2973432	2973433	rs2993481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.32	LINC00982	rs2993481-T	0.187029	4E-13		0.020602345	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2973432	2973433	rs2993481	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.32	NR	rs2993481-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
607	chr1	2973432	2973433	rs2993481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.32		rs2993481-?	NR	1E-17				NR [~ 8900000] (imputed)	N
607	chr1	2973432	2973433	rs2993481	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p36.32	NR	rs2993481-T	0.19	9E-20		0.021	[0.016-0.026] unit increase	Affymetrix [2446094] (imputed)	N
607	chr1	2973432	2973433	rs2993481	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p36.32	NR	rs2993481-T	0.19	5E-8				Affymetrix [2446094] (imputed)	N
607	chr1	2973432	2973433	rs2993481	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p36.32	NR	rs2993481-A	0.6703	2E-17		0.0195	[0.015-0.024] unit decrease	NR [~ 27400000] (imputed)	N
607	chr1	2974063	2974064	rs72630911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.32	NR	rs72630911-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
607	chr1	2978755	2978755	rs113565775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.32	AL008733.1	rs113565775-AG	0.191995	2E-10		0.01862364	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2980276	2980277	rs2072732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs2072732-C	0.2215	3E-16				Affymetrix, Illumina [23467995] (imputed)	N
607	chr1	2980276	2980277	rs2072732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p36.32	NR	rs2072732-C	0.192625	2E-18		0.021259	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
607	chr1	2980276	2980277	rs2072732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.32	LINC00982	rs2072732-C	0.1916	1E-14		0.03619666	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2980577	2980578	rs72630915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p36.32		rs72630915-T	NR	1E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
607	chr1	2985884	2985885	rs7413494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p36.32		rs7413494-G	NR	5E-8		0.0553	[0.036-0.075] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
607	chr1	2987267	2987268	rs2742690	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p36.32	NA	rs2742690-A	0.2001	9E-12		0.0168	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
607	chr1	2995632	2995633	rs2788093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.32	PRDM16	rs2788093-T	0.191745	2E-9		0.017094253	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2996521	2996522	rs4648452	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	1p36.32	NR	rs4648452-T	0.1889	6E-9		0.0193305	[0.013-0.026] unit decrease	Affymetrix [3505788] (imputed)	N
607	chr1	2996601	2996602	rs1569419	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	1p36.32		rs1569419-T	0.2229	5E-17		0.191362	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
607	chr1	2996601	2996602	rs1569419	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.762979	7E-14		0.0189	[0.014-0.024] unit increase	Affymetrix [23037915] (imputed)	N
607	chr1	2996601	2996602	rs1569419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.32		rs1569419-C	NR	1E-23		0.0261	[0.021-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
607	chr1	2996601	2996602	rs1569419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p36.32		rs1569419-C	NR	5E-26		0.0275	[0.022-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
607	chr1	2996601	2996602	rs1569419	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p36.32		rs1569419-T	0.233	4E-22		0.13	[0.1-0.15] % increase	Affymetrix [NR] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766557	1E-23		0.026261989	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766056	5E-48		0.039968148	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766083	1E-22		0.026131056	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766602	2E-29		0.02951746	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766589	4E-32		0.031235816	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766092	1E-24		0.02714794	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766507	4E-30		0.0291271	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766493	2E-31		0.030608626	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766531	7E-10		0.016236743	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.32	PRDM16	rs1569419-C	0.766568	3E-13		0.019441457	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.794783	2E-22				Affymetrix, Illumina [24588908] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.765276	2E-20		0.021374	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1569419-T	0.238011	7E-41				Affymetrix, Illumina [17210439] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.32	NR	rs1569419-T	0.234405	3E-44		0.03195	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.791802	7E-29				Affymetrix, Illumina [24246363] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.76567	1E-31		0.026656	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.791831	6E-29				Affymetrix, Illumina [20825802] (imputed)	N
607	chr1	2996601	2996602	rs1569419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.32	NR	rs1569419-C	0.765562	7E-32		0.027133	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
607	chr1	2996601	2996602	rs1569419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.32		rs1569419-?	NR	2E-22				NR [~ 8900000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.32		rs1569419-?	NR	2E-34				NR [~ 8900000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.32		rs1569419-?	NR	1E-8				NR [~ 8900000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7653	2E-10		0.02702963	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7644	7E-24		0.04387502	[0.035-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7645	2E-11		0.02859096	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7645	1E-22		0.04211349	[0.034-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7652	1E-13		0.03114303	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr1	2996601	2996602	rs1569419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p36.32	PRDM16	rs1569419-C	0.7652	4E-14		0.03186936	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr1	3002071	3002072	rs2981884	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.32	NR	rs2981884-?	NR	2E-6				Affymetrix [NR]	N
607	chr1	3008686	3008687	rs2376820	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	1p36.32	NR	rs2376820-C		2E-6		0.2344	[0.14-0.33] unit decrease	Illumina [12759548] (imputed)	N
608	chr1	3038529	3038530	rs6704012	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1p36.32	NR	rs6704012-C		3E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
608	chr1	3049361	3049362	rs12024620	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p36.32	PRDM16	rs12024620-C	0.94	1E-10		0.01	[0.0064-0.0136] unit decrease	Affymetrix [at least 8002429] (imputed)	N
608	chr1	3049361	3049362	rs12024620	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p36.32	PRDM16	rs12024620-T	0.06	7E-20		0.04	unit increase	Affymetrix [8928767] (imputed)	N
608	chr1	3049380	3049381	rs12021948	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p36.32	PRDM16	rs12021948-G	0.93	1E-10		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
608	chr1	3075596	3075597	rs10218452	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1p36.32	PRDM16	rs10218452-G	0.22	5E-38		1.11	[1.10-1.13]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
608	chr1	3081240	3081241	rs2075968	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	1p36.32	PRDM16	rs2075968-?	NR	9E-28		1.102	[1.083-1.122]	Illumina [13763073] (imputed)	N
608	chr1	3083711	3083712	rs2651899	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	1p36.32	PRDM16	rs2651899-C	0.41	4E-14		1.09	[1.07-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
608	chr1	3083711	3083712	rs2651899	21666692	Chasman DI	2011-06-12	Nat Genet	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	1p36.32	PRDM16	rs2651899-C	0.43	4E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [2608509] (imputed)	N
608	chr1	3085185	3085186	rs56304645	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1p36.32	PRDM16	rs56304645-T	NR	6E-10		0.0102	[0.0071-0.0133] unit increase	Affymetrix [9304965] (imputed)	N
608	chr1	3089167	3089167	rs376684861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.32	PRDM16	rs376684861-CG	0.058459	5E-11		0.03095902	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
608	chr1	3091586	3091587	rs61759167	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	1p36.32	PRDM16	rs61759167-T	0.22306	8E-11		0.15116669	[0.11-0.2] unit increase	Affymetrix [7288503] (imputed)	N
608	chr1	3091586	3091587	rs61759167	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	1p36.32	PRDM16	rs61759167-T	0.231	4E-13		0.047	[0.034-0.059] unit increase	Illumina [7428049] (imputed)	N
608	chr1	3097312	3097313	rs34468831	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	1p36.32	PRDM16	rs34468831-G	0.37	3E-12		0.032	NR unit decrease	Illumina [9591901] (imputed)	N
608	chr1	3097312	3097313	rs34468831	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	1p36.32	PRDM16	rs34468831-G	0.09	6E-8		0.012	unit increase	NR [NR]	N
608	chr1	3098488	3098489	rs61759178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	1p36.32		rs61759178-C	NR	2E-10		0.1497	[0.1-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
608	chr1	3098570	3098571	rs79366678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.32	PRDM16	rs79366678-G	0.059387	3E-10		0.030137803	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr1	3098845	3098846	rs74753072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.32	PRDM16	rs74753072-A	0.059477	3E-10		0.029731605	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
608	chr1	3098845	3098846	rs74753072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.32	PRDM16	rs74753072-A	0.05945	1E-11		0.031429	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
608	chr1	3099193	3099194	rs950200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.32	PRDM16	rs950200-G	0.603305	5E-11		0.015280052	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr1	3103311	3103312	rs12135062	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1p36.32	PRDM16	rs12135062-T	0.23	4E-10		1.05	[1.04-1.07]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
608	chr1	3104971	3104972	rs116525159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.32	PRDM16	rs116525159-A	0.056192	1E-11		0.03220442	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
608	chr1	3104971	3104972	rs116525159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.32		rs116525159-?	NR	4E-11				NR [~ 8900000] (imputed)	N
608	chr1	3107385	3107386	rs12139196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1p36.32		rs12139196-T	NR	2E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
608	chr1	3107546	3107547	rs60330317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1p36.32	NR	rs60330317-A	NR	2E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
608	chr1	3117443	3117444	rs4483351	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	1p36.32		rs4483351-?	NR	9E-6				Illumina [7401356] (imputed)	N
608	chr1	3117804	3117805	rs74048307	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p36.32	PRDM16	rs74048307-A	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
608	chr1	3117804	3117805	rs74048307	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p36.32	PRDM16	rs74048307-A	NR	5E-6				Illumina [up to 11995908] (imputed)	N
608	chr1	3122320	3122321	rs12028814	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.32	PRDM16	rs12028814-?		9E-13				NR [7428630] (imputed)	N
608	chr1	3122320	3122321	rs12028814	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs12028814-?	NR	3E-8	(right accumbens area)			NR [9227495] (imputed)	N
608	chr1	3125090	3125091	rs4648455	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs4648455-?	NR	3E-9	(left caudate)			NR [9227495] (imputed)	N
608	chr1	3132423	3132424	rs2817144	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1p36.32	PRKCZ	rs2817144-?		2E-17				NR [7428630] (imputed)	N
608	chr1	3132423	3132424	rs2817144	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1p36.32	PRKCZ	rs2817144-?		4E-18				NR [7428630] (imputed)	N
608	chr1	3132423	3132424	rs2817144	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p36.32	PRKCZ	rs2817144-?		3E-17				NR [7428630] (imputed)	N
608	chr1	3133421	3133422	rs2817145	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs2817145-?	NR	3E-13	(right caudate)			NR [9227495] (imputed)	N
608	chr1	3133421	3133422	rs2817145	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs2817145-?	NR	2E-16	(left caudate)			NR [9227495] (imputed)	N
608	chr1	3133421	3133422	rs2817145	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	1p36.32	NR	rs2817145-A	0.2073	7E-10		6.171	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr1	3147289	3147290	rs6424070	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs6424070-?	NR	1E-9	(left caudate)			NR [9227495] (imputed)	N
609	chr1	3149788	3149789	rs2817160	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs2817160-?	NR	6E-9	(left caudate)			NR [9227495] (imputed)	N
609	chr1	3149788	3149789	rs2817160	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.32	NR	rs2817160-?	NR	2E-8	(right caudate)			NR [9227495] (imputed)	N
609	chr1	3169754	3169755	rs114899186	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p36.32	NR	rs114899186-A	NR	5E-6	(African)	0.5554	[0.32-0.79] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
609	chr1	3175370	3175371	rs10909912	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.32	NR	rs10909912-T	0.8102	2E-8		1.0440594	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
609	chr1	3175727	3175728	rs2455101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.32		rs2455101-?	NR	8E-9				NR [~ 8900000] (imputed)	N
609	chr1	3187315	3187316	rs72848069	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1p36.32	PRDM16	rs72848069-A	0.9725	3E-7		0.1928	[0.12-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr1	3199633	3199634	rs12562988	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1p36.32	NR	rs12562988-A	NR	4E-7		0.06339	[0.039-0.088] unit decrease	Illumina [~ 540852]	N
609	chr1	3203274	3203275	rs111756326	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p36.32	PRDM16	rs111756326-A	0.96	3E-6		0.05	NR unit decrease	Illumina [NR] (imputed)	N
609	chr1	3220381	3220382	rs2500281	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1p36.32	NR	rs2500281-?	NR	6E-10				NR [up to 7000000]	N
609	chr1	3246838	3246839	rs60965469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.32	PRDM16	rs60965469-A	0.895284	2E-22	(-28 ms)	0.0900471	[0.072-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
609	chr1	3246838	3246839	rs60965469	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.32	PRDM16	rs60965469-A	0.895284	2E-21	(-26 ms)	0.0884709	[0.071-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
609	chr1	3252006	3252007	rs4648478	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	1p36.32	PRDM16	rs4648478-G	NR	6E-6	(Profile nasal angle)	0.005	[0.003-0.007] unit decrease	Affymetrix [311944]	N
609	chr1	3253241	3253243	rs36192537	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose size)	6,169 Latin American individuals	NA	1p36.32		rs36192537-?	NR	9E-9				Illumina [8703729] (imputed)	N
609	chr1	3253241	3253243	rs36192537	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 3)	6,169 Latin American individuals	NA	1p36.32		rs36192537-?	NR	8E-6				Illumina [8703729] (imputed)	N
609	chr1	3253241	3253243	rs36192537	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	1p36.32		rs36192537-?	NR	3E-11				Illumina [8703729] (imputed)	N
609	chr1	3253241	3253243	rs36192537	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose protrusion)	6,169 Latin American individuals	NA	1p36.32		rs36192537-?	NR	2E-7				Illumina [8703729] (imputed)	N
609	chr1	3253241	3253243	rs36192537	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	1p36.32		rs36192537-?	NR	2E-6				Illumina [8703729] (imputed)	N
609	chr1	3254368	3254369	rs1572037	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p36.32		rs1572037-C	0.276793824	3E-22				Illumina [7417619] (imputed)	N
609	chr1	3255538	3255539	rs2483280	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	1p36.32	PRDM16	rs2483280-A	0.26	2E-11		0.75	[NR] unit decrease	Affymetrix [2100000] (imputed)	N
609	chr1	3259182	3259183	rs6683273	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p36.32	NR	rs6683273-?	NR	3E-8	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
610	chr1	3280252	3280253	rs6658356	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p36.32	PRDM16, ARHGEF16, MEFGF6	rs6658356-A	0.06	2E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
610	chr1	3297459	3297459	rs201839757	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	1p36.32	NR	rs201839757-?	0.0126	6E-6		198.0	[113-283] unit increase	NR [9714326] (imputed)	N
610	chr1	3300806	3300807	rs868688	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	1p36.32	PRDM16	rs868688-?	NR	7E-7	(AA)	1.89	[1.28-3.57]	Affymetrix, Illumina [NR] (imputed)	N
610	chr1	3309465	3309466	rs35864014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.32	PRDM16	rs35864014-A	0.213995	2E-9		0.01642629	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3312913	3312914	rs871822	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	1p36.32		rs871822-G	0.266	4E-6		0.5		Illumina [5409651] (imputed)	N
610	chr1	3318434	3318435	rs11577526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.32		rs11577526-G	NR	8E-13		0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
610	chr1	3318713	3318714	rs5024246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA			rs5024246-?	NR	4E-10				NR [~ 8900000] (imputed)	N
610	chr1	3318768	3318769	rs10909942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.32	PRDM16	rs10909942-G	0.643664	3E-16		0.018806648	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3318768	3318769	rs10909942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.32	PRDM16	rs10909942-G	0.643641	1E-12		0.016360978	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3318768	3318769	rs10909942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.32	PRDM16	rs10909942-G	0.643665	6E-16		0.018632859	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3318768	3318769	rs10909942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs10909942-G	0.625639	6E-20				Affymetrix, Illumina [24558453] (imputed)	N
610	chr1	3318768	3318769	rs10909942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.32	NR	rs10909942-G	0.643492	8E-22		0.019368	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
610	chr1	3318768	3318769	rs10909942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.32		rs10909942-?	NR	4E-17				NR [~ 8900000] (imputed)	N
610	chr1	3318832	3318832	rs145611121	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1p36.32	PRDM16	rs145611121-GC	0.643	3E-9		0.02190964	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
610	chr1	3319060	3319061	rs1889124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.32	PRDM16	rs1889124-G	0.76038	7E-11		0.017191324	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3319060	3319061	rs1889124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.32	PRDM16	rs1889124-G	0.760369	1E-10		0.01693457	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr1	3325911	3325912	rs2493298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.32		rs2493298-A	NR	1E-11		0.059	[0.042-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
610	chr1	3325911	3325912	rs2493298	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p36.32	PRDM16	rs2493298-A	0.137877	2E-11		0.058988318	[0.042-0.076] unit increase	Affymetrix [7288503] (imputed)	N
610	chr1	3325911	3325912	rs2493298	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p36.32	PRDM16	rs2493298-A	0.1355	1E-9		0.0514	[0.035-0.068] unit increase	Affymetrix [at least 7947838] (imputed)	N
610	chr1	3325911	3325912	rs2493298	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p36.32	PRDM16	rs2493298-A	0.1352	2E-9		0.0567	[0.038-0.075] unit increase	NR [8041861] (imputed)	N
610	chr1	3325911	3325912	rs2493298	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p36.32	PRDM16	rs2493298-A	0.135	2E-9		0.057	[0.037-0.077] unit increase	Affymetrix [7947838] (imputed)	N
610	chr1	3327031	3327032	rs2493296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.32		rs2493296-?	NR	2E-20				NR [~ 8900000] (imputed)	N
610	chr1	3327031	3327032	rs2493296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.32		rs2493296-?	NR	3E-8				NR [~ 8900000] (imputed)	N
610	chr1	3328658	3328659	rs2493292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p36.32		rs2493292-T	NR	7E-13		0.0232	[0.017-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
610	chr1	3328658	3328659	rs2493292	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	1p36.32	PRDM16	rs2493292-?	NR	2E-9		0.0535559	NR unit decrease	Affymetrix [464137]	N
610	chr1	3328658	3328659	rs2493292	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	1p36.32	PRDM16	rs2493292-T	0.151	1E-8		0.37	[0.23-0.51] unit increase	Illumina [247039]	N
610	chr1	3328658	3328659	rs2493292	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1p36.32	PRDM16	rs2493292-T	0.15136427822836	3E-6		0.2945776	[0.17-0.42] unit increase	Illumina [247039]	N
610	chr1	3328658	3328659	rs2493292	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	1p36.32	PRDM16	rs2493292-T	0.151	1E-8		0.23	[0.15-0.31] unit increase	Illumina [247039]	N
610	chr1	3329383	3329384	rs2493291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.32		rs2493291-T	NR	5E-15		0.0269	[0.02-0.034] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
610	chr1	3329383	3329384	rs2493291	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	1p36.32	PRDM16	rs2493291-G	0.881	2E-14				NR [509413]	N
610	chr1	3330883	3330884	rs2493288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p36.32		rs2493288-A	NR	9E-14		0.0246	[0.018-0.031] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
610	chr1	3337542	3337543	rs1572040	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	1p36.32	NR	rs1572040-G	NR	8E-8		0.157	[0.1-0.21] unit decrease	Illumina [6319684] (imputed)	N
610	chr1	3352227	3352228	rs12735779	33350037	Cheng CF	2020-12-22	J Gene Med	Genetic Risk Score Constructed from Common Genetic Variants is Associated with Cardiovascular Disease Risk in Type 2 Diabetes Mellitus.	Cardiovascular disease in type 2 diabetes	326 Han Chinese ancestry cases, 1,209 Han Chinese ancestry controls	68 Han Chinese ancestry cases, 317 Han Chinese ancestry controls	1p36.32	PRDM16	rs12735779-C	NR	8E-6		3.72	[2.09-6.63]	Affymetrix, Illumina [NR] (imputed)	N
610	chr1	3389756	3389757	rs41315284	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	1p36.32		rs41315284-?	NR	9E-17		0.114879	[0.086-0.144] unit decrease	NR [9800000] (imputed)	N
610	chr1	3389756	3389757	rs41315284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p36.32	NR	rs41315284-G	NR	1E-13		0.1274	[0.094-0.161] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr1	3413996	3413997	rs12725009	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	1p36.32	NR	rs12725009-A	0.015	2E-7		4.46	[2.54-7.94]	Illumina [7261187] (imputed)	N
611	chr1	3431554	3431555	rs947350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.32		rs947350-?	NR	1E-34				NR [~ 8900000] (imputed)	N
611	chr1	3522560	3522561	rs35701577	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	1p36.32	MEGF6	rs35701577-C	0.1731	8E-7		2.179	[1.86-2.5]	Illumina [281811]	N
611	chr1	3527290	3527291	rs7516425	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.32		rs7516425-A	0.22	3E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
611	chr1	3527365	3527366	rs7525560	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p36.32	NR	rs7525560-?		3E-8				NR [7428630] (imputed)	N
611	chr1	3528687	3528688	rs12403243	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.32		rs12403243-T	0.22	7E-22		9.62	z score increase	Affymetrix [9061022] (imputed)	N
612	chr1	3580242	3580243	rs10910005	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1p36.32		rs10910005-?	NR	2E-9				Affymetrix [NR] (imputed)	N
612	chr1	3603694	3603695	rs3765718	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	1p36.32	TP73	rs3765718-?	NR	2E-6				Affymetrix, Illumina [4802696] (imputed)	N
612	chr1	3627665	3627666	rs9786961	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	1p36.32		rs9786961-?	NR	1E-6		1.15771	[1.1-1.22]	NR [673172]	N
612	chr1	3648253	3648254	rs34661835	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1p36.32	TP73	rs34661835-A	0.097	3E-6		0.0714	[0.042-0.101] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr1	3649561	3649562	rs9662633	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p36.32	TP73	rs9662633-A	0.05	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr1	3651030	3651031	rs12562437	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p36.32	TP73, CCDC27, KIAA0495, LRRC47	rs12562437-T	0.04	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr1	3651408	3651409	rs10910018	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p36.32	TP73, CCDC27, KIAA0495, LRRC47	rs10910018-A	0.04	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr1	3651408	3651409	rs10910018	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p36.32	TP73, CCDC27, KIAA0495, LRRC47	rs10910018-A	0.04	2E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
612	chr1	3669355	3669356	rs76597070	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	CCDC27	rs76597070-A	0.0050	3E-6	(Calorimeter activity )	0.03	[NR] counts/d increase	Illumina [899892]	N
613	chr1	3684953	3684954	rs1181870	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p36.32	SMIM1	rs1181870-A		1E-28		0.029	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
613	chr1	3684953	3684954	rs1181870	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1p36.32	CCDC27	rs1181870-A	0.2394	2E-14		0.03207646	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.32		rs1175550-G	NR	3E-19		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
613	chr1	3691527	3691528	rs1175550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p36.32		rs1175550-G	NR	1E-45		0.0404	[0.035-0.046] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
613	chr1	3691527	3691528	rs1175550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p36.32		rs1175550-G	NR	2E-52		0.0422	[0.037-0.048] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
613	chr1	3691527	3691528	rs1175550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.32		rs1175550-G	NR	2E-28		0.0252	[0.021-0.03] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231585	1E-64		0.04535328	[0.04-0.051] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231585	9E-79		0.05024246	[0.045-0.055] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231552	4E-46		0.03790587	[0.033-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231505	3E-24		0.02686766	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231554	6E-80		0.049988337	[0.045-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231426	7E-20		0.023393	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231488	8E-93		0.0547071	[0.05-0.06] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231553	1E-38		0.0348624	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231511	5E-72		0.047862276	[0.043-0.053] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231517	8E-85		0.05204257	[0.047-0.057] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.32	SMIM1	rs1175550-G	0.231502	2E-33		0.031965658	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1175550-A	0.762789	4E-61				Affymetrix, Illumina [22063850] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.32	NR	rs1175550-A	0.768374	3E-61		0.039114	[0.034-0.044] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.237742	2E-28				Affymetrix, Illumina [24332387] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.231994	2E-30		0.026561	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.238277	5E-119				Affymetrix, Illumina [21126107] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.232138	5E-123		0.056743	[0.052-0.061] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.238035	4E-38				Affymetrix, Illumina [24653286] (imputed)	N
613	chr1	3691527	3691528	rs1175550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.32	NR	rs1175550-G	0.232052	1E-40		0.030902	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
613	chr1	3691527	3691528	rs1175550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.32		rs1175550-?	NR	2E-63				NR [~ 8900000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.32		rs1175550-?	NR	2E-30				NR [~ 8900000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p36.32	CCDC27	rs1175550-G	NR	2E-16		0.0366979	[0.027-0.046] unit decrease	Affymetrix [16832071] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2319	3E-34		0.05187558	[0.044-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2319	2E-42		0.05803529	[0.05-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2321	9E-13		0.03013325	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2321	1E-43		0.05686661	[0.049-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2319	3E-27		0.04553773	[0.037-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2319	2E-43		0.05865731	[0.05-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p36.32	SMIM1	rs1175550-G	0.2319	1E-49		0.06299945	[0.055-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3691527	3691528	rs1175550	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	1p36.32	CCDC27, LOC388588, KIAA0562, DFFB, LRRC47	rs1175550-A	NR	5E-10		0.198	[0.14-0.26] unit decrease	Illumina [> 2500000] (imputed)	N
613	chr1	3691726	3691727	rs1175549	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1p36.32	SMIM1	rs1175549-A	0.7548	7E-13		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
613	chr1	3691997	3692014	rs566629828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.32	SMIM1	rs566629828-A	0.013216	5E-15		0.080923416	[0.061-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691997	3692014	rs566629828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.32	SMIM1	rs566629828-A	0.013217	1E-16		0.08540376	[0.065-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691997	3692014	rs566629828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.32	SMIM1	rs566629828-A	0.013255	5E-42		0.13933502	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3691997	3692014	rs566629828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.32	SMIM1	rs566629828-A	0.013225	5E-16		0.083490305	[0.063-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691997	3692014	rs566629828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.32	SMIM1	rs566629828-A	0.013226	2E-17		0.087447345	[0.067-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr1	3691997	3692014	rs566629828	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p36.32	SMIM1	rs566629828-?	0.013	5E-12		0.12	NR unit increase	Affymetrix [16832071] (imputed)	N
613	chr1	3691997	3692014	rs566629828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.32	SMIM1	rs566629828-A	0.014	1E-17		0.138352	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3693031	3693032	rs1175548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.32	SMIM1, CCDC27, LRRC47	rs1175548-G	0.358268	9E-10		0.014143627	[0.0096-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
613	chr1	3694795	3694796	rs1891934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p36.32	NR	rs1891934-A	NR	2E-34		0.0366	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
613	chr1	3696355	3696356	rs12061931	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Ovarian cancer	1,259 European ancestry cases, 410,350 European ancestry controls	NA	1p36.32		rs12061931-T	NR	6E-8		5.79	NR	Affymetrix [7846216] (imputed)	N
613	chr1	3697290	3697291	rs2996428	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.32	LRRC47	rs2996428-T	0.2443	7E-21		0.03845304	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3718591	3718591	rs113282222	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	1p36.32	CEP104	rs113282222-TGGAG	0.173	6E-6		0.031	[0.019-0.043] % decrease	Illumina [11510031] (imputed)	N
613	chr1	3719889	3719890	rs6661554	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.32	NR	rs6661554-T	0.2444	4E-29				Affymetrix, Illumina [24246363] (imputed)	N
613	chr1	3728060	3728061	rs12135894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.32	NR	rs12135894-T	0.249842	8E-31		0.024338	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
613	chr1	3728060	3728061	rs12135894	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.32	CEP104	rs12135894-T	0.2518	1E-13		0.03010869	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr1	3768564	3768565	rs1122613	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	1p36.32	ARHGEF16	rs1122613-?		3E-6		12.54	[7.59-17.49] unit decrease	Illumina [~ 4900000] (imputed)	N
615	chr1	4003893	4003894	rs12079672	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.32	NR	rs12079672-A	0.02439	2E-8	(RTN4)	0.04502	NR unit decrease	Illumina [1671387] (imputed)	N
615	chr1	4035672	4035673	rs10799227	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	1p36.32	NR	rs10799227-?	NR	5E-6		0.15	[0.09-0.22] unit increase	Illumina [> 2600000] (imputed)	N
616	chr1	4086826	4086827	rs4478781	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	1p36.32		rs4478781-C	NR	1E-8	(African American)	1.11	NR	Affymetrix [~ 79000000] (imputed)	N
616	chr1	4087707	4087708	rs57920188	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	1p36.32	NR	rs57920188-G		6E-6		0.0982	[0.056-0.141] SD units increase	NR [10700000] (imputed)	N
616	chr1	4094067	4094068	rs12137595	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Neuropathy in Charcot-Marie-Tooth disease type 1A	471 European ancestry individuals	NA	1p36.32	LINC01346	rs12137595-T	0.10	1E-7		3.014	[1.917-4.111]	Illumina [600000]	N
616	chr1	4120310	4120311	rs7514530	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.32	DFFB	rs7514530-?	NR	8E-6	(CE 16:0)	0.17613798	[0.099-0.253] unit increase	Affymetrix [at least 2500000] (imputed)	N
616	chr1	4123203	4123204	rs12044274	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	1p36.32	LOC728716	rs12044274-T	0.65	3E-6		1.48		Illumina [4903804] (imputed)	N
616	chr1	4140029	4140030	rs4436359	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	1p36.32	RP13-614K11.1, RP11-374C13.1	rs4436359-A	0.77392	4E-8		1.1004289	[1.06-1.15]	NR [NR] (imputed)	N
616	chr1	4149082	4149083	rs531367212	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	1p36.32	NR	rs531367212-?	0.031	2E-6		3.04	[1.92-4.82]	Illumina [5934489] (imputed)	N
616	chr1	4157841	4157842	rs4351611	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	1p36.32		rs4351611-T	NR	7E-6		1.2	[1.11-1.3]	Illumina [7591411] (imputed)	N
616	chr1	4159378	4159379	rs10799199	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p36.32	NR	rs10799199-T	0.8298	4E-7		0.932	[0.57-1.29] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr1	4159378	4159379	rs10799199	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	1p36.32	NR	rs10799199-T	0.8029	5E-7		1.1406	[0.7-1.58] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr1	4183005	4183006	rs10915437	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	1p36.32	AJAP1	rs10915437-?	0.64	3E-8		1.16	[1.1-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
616	chr1	4190684	4190685	rs4282783	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1p36.32	NR	rs4282783-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
616	chr1	4190684	4190685	rs4282783	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1p36.32	NR	rs4282783-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
616	chr1	4193550	4193551	rs12568266	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p36.32	hCG_2036596, LOC644357	rs12568266-A	0.029	6E-10		5.02	[2.86-8.8]	Illumina [1556551]	N
617	chr1	4220094	4220095	rs7513344	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.6151..S.adenosyl.L.methionine.cycle.I)	7,738 European ancestry individuals	NA	1p36.32		rs7513344-C	0.9134272421814416	2E-9		0.18125899	[0.12-0.24] unit increase	Illumina [5584686] (imputed)	N
617	chr1	4231684	4231685	rs10915462	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p36.32	NR	rs10915462-?	NR	5E-6		0.145595	[0.083-0.208] unit decrease	NR [13958389] (imputed)	N
617	chr1	4284918	4284919	rs7528938	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.32	DFFB	rs7528938-?	NR	7E-7	(PC 36:3)	0.1637667	[0.099-0.229] unit decrease	Affymetrix [at least 2500000] (imputed)	N
617	chr1	4315203	4315204	rs966321	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	1p36.32	intergenic	rs966321-?	0.47	8E-6				Affymetrix [70897]	N
618	chr1	4359382	4359383	rs12564602	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.32	NR	rs12564602-T	NR	2E-7		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
618	chr1	4359382	4359383	rs12564602	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.32	NR	rs12564602-T	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
618	chr1	4388360	4388361	rs72631072	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1p36.32		rs72631072-A	0.01	3E-10				NR [NR] (imputed)	N
618	chr1	4388360	4388361	rs72631072	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1p36.32		rs72631072-A	0.01	5E-9		2.2	[1.46-2.94] unit decrease	NR [NR] (imputed)	N
618	chr1	4396538	4396539	rs199545687	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1p36.32	LOC284661	rs199545687-C	NR	2E-8	(GO:0005874|CC|03|microtubule)	5.596856	NR Z-score decrease	Illumina [8100000] (imputed)	N
618	chr1	4444538	4444539	rs239339	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.32	LOC644357	rs239339-A	0.095	3E-6	(Urinary free dopamine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
618	chr1	4449203	4449204	rs72632736	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	1p36.32	LOC284661, AJAP1	rs72632736-?		3E-9	(Additive)	2.4	[1.80-3.30]	Illumina [5600610] (imputed)	N
619	chr1	4548452	4548453	rs705687	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p36.32	NR	rs705687-G	0.785	1E-11		0.0109027	[0.0077-0.0141] unit decrease	NR [~ 9732723] (imputed)	N
619	chr1	4548452	4548453	rs705687	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1p36.32	NR	rs705687-G	0.785	8E-10		0.010904017	[0.0074-0.0144] unit decrease	NR [~ 10000000] (imputed)	N
619	chr1	4559900	4559901	rs4654438	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	1p36.32	AJAP1	rs4654438-T	0.4593	2E-6		1.6269	[NR] unit decrease	Illumina [1216189] (imputed)	N
619	chr1	4569435	4569436	rs780569	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	1p36.32	AJAP1	rs780569-A	0.71	5E-12		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
619	chr1	4569435	4569436	rs780569	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	1p36.32	LOC284661	rs780569-T	0.2895	8E-6		0.005	[0.0028-0.0072] unit increase	Affymetrix [~ 7740000] (imputed)	N
619	chr1	4569435	4569436	rs780569	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	1p36.32	LOC284661	rs780569-A	0.708	8E-9		0.0161	[0.011-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
619	chr1	4569435	4569436	rs780569	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	1p36.32	AJAP1	rs780569-A	0.7075	4E-10		0.015331182	[0.011-0.02] unit decrease	Affymetrix [11514936] (imputed)	N
619	chr1	4569435	4569436	rs780569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.32		rs780569-A	0.7201	5E-8		0.0085	[0.0054-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
619	chr1	4581622	4581623	rs607850	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	1p36.32	RP5-1166F10.1, RP1-37J18.1	rs607850-G	0.1	2E-6		1.569	[NR]	Illumina [421909] (imputed)	N
620	chr1	4589882	4589883	rs184340784	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	1p36.32	NR	rs184340784-?	NR	4E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
620	chr1	4589882	4589883	rs184340784	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	1p36.32	NR	rs184340784-?	NR	1E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
620	chr1	4589882	4589883	rs184340784	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	1p36.32	NR	rs184340784-?	NR	6E-7	(AA, adjusted for duration of diabetes and glycemic control)			Affymetrix, Illumina [NR] (imputed)	N
620	chr1	4604103	4604104	rs241215	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	1p36.32	NR	rs241215-G	0.322	5E-7		1.3333333	[1.19-1.47]	Affymetrix [435183]	N
620	chr1	4604103	4604104	rs241215	26394188	Zhu Z	2015-09-22	Nat Commun	Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls.	Adolescent idiopathic scoliosis	960 Han Chinese ancestry cases, 1,499 Han Chinese ancestry controls	3,316 Han Chinese ancestry cases,  4,516 Han Chinese ancestry controls	1p36.32	AJAP1	rs241215-?	0.675	3E-9		1.2	[1.12-1.28]	Affymetrix [516220]	N
620	chr1	4614821	4614822	rs241257	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	1p36.32	intergenic	rs241257-A		9E-6	(AA, factor score analysis)	0.17	[NR] unit increase	Affymetrix [up to 730090]	N
620	chr1	4620995	4620996	rs12120353	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	1p36.32	intergenic	rs12120353-A		3E-6	(AA, case-control analysis)	2.13	[NR]	Affymetrix [up to 730090]	N
620	chr1	4666613	4666614	rs114723073	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p36.32	NR	rs114723073-T	0.9855	7E-7		9.803	[5.94-13.67] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
620	chr1	4668669	4668670	rs3896439	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1p36.32	AJAP1	rs3896439-?	NR	2E-8	(DMFS5max, DMFS5)			Illumina [518997]	N
620	chr1	4690496	4690497	rs113994594	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.32	NR	rs113994594-A	0.01394	5E-16	(AKR1B10)	2.971	NR unit increase	Illumina [1671387] (imputed)	N
620	chr1	4690496	4690497	rs113994594	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.32	NR	rs113994594-A	0.01394	2E-9	(ACSS3)	0.198	NR unit increase	Illumina [1671387] (imputed)	N
620	chr1	4699225	4699226	rs10915573	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1p36.32	AJAP1	rs10915573-G	0.2499	3E-6		0.0088	[0.0051-0.0125] unit increase	Affymetrix [~ 7740000] (imputed)	N
620	chr1	4706316	4706317	rs12741248	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Maximum retinal venular tortuosity	3,094 European ancestry individuals	NA	1p36.32	AJAP1	rs12741248-A	NR	2E-7		0.22	[0.14-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
621	chr1	4738149	4738150	rs533274066	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p36.32	NR	rs533274066-?	NR	9E-6		1.25185	[0.7-1.8] unit increase	NR [13958389] (imputed)	N
621	chr1	4770903	4770904	rs1483197	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	8,732 European American and African American ancestry men	NA	1p36.32	NR	rs1483197-?	NR	1E-7		0.2364	NR unit decrease	Affymetrix, Illumina [7784259] (imputed)	N
621	chr1	4781921	4781922	rs12135881	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.32	AJAP1	rs12135881-?		3E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
621	chr1	4781921	4781922	rs12135881	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.32	AJAP1	rs12135881-C	0.9879	2E-8	(African)	16.94	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
621	chr1	4818404	4818405	rs423796	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	1p36.32		rs423796-A	0.1877	6E-6		1.462	[1.2409999999999899-1.722]	Affymetrix [7975321] (imputed)	N
622	chr1	4850822	4850823	rs909757	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.32	AJAP1	rs909757-T	0.63	1E-8		1.0198953		Affymetrix [11880941] (imputed)	N
622	chr1	4853687	4853688	rs932350	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	1p36.32	AJAP1, C1orf174	rs932350-C	0.67	3E-7	(DWRT-dr)	0.1122	[0.07-0.155] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
622	chr1	4853687	4853688	rs932350	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	1p36.32	AJAP1, C1orf174	rs932350-C	0.67	3E-6	(VPWL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
622	chr1	4853687	4853688	rs932350	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	1p36.32	AJAP1, C1orf174	rs932350-C	0.67	2E-6	(VPWL-dr)			Affymetrix, Illumina [NR] (imputed)	N
622	chr1	4856930	4856931	rs760816	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	1p36.32	AJAP1	rs760816-A	NR	1E-7		13.7849	[8.92-18.65] unit decrease	Illumina [6097251] (imputed)	N
622	chr1	4897643	4897644	rs11576972	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1p36.32	AJAP1	rs11576972-C	0.15	3E-6		1.43	[0.82-2.04] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
622	chr1	4902548	4902549	rs112035065	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.32	NR	rs112035065-?	NR	5E-6		1.7481	[0.85-2.65] unit increase	Illumina [at least 560000] (imputed)	N
622	chr1	4930084	4930085	rs79360823	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1p36.32	AJAP1	rs79360823-T	NR	1E-6		0.26537165	[0.16-0.37] unit increase	Affymetrix [9576485] (imputed)	N
623	chr1	5037193	5037194	rs74054018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.32	NR	rs74054018-C	0.02265	2E-8	(SUCLA2)	0.1285	NR unit increase	Illumina [1671387] (imputed)	N
623	chr1	5063292	5063293	rs10915307	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p36.32	NR	rs10915307-?	NR	6E-6		0.0079179	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
623	chr1	5105868	5105869	rs11583238	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	1p36.32	NR	rs11583238-A	0.2374	5E-7	(dominant, female)	1.5213529	[1.29142208156589-1.79222165802915]	Affymetrix, Illumina [6131010] (imputed)	N
624	chr1	5117365	5117366	rs184833777	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.32	NR	rs184833777-?	NR	1E-6		4.893	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
624	chr1	5162706	5162707	rs4949169	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	1p36.32	RP11-542C10.1	rs4949169-A	NR	2E-6		1.94624	[1.18-2.71] unit increase	Illumina [NR] (imputed)	N
624	chr1	5170711	5170712	rs7513590	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	1p36.32	intergenic	rs7513590-?	0.10	5E-6	(height)	0.31	[0.17-0.45] mm decrease	Illumina [316730]	N
624	chr1	5218634	5218635	rs144926861	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7orf73	5,333 Icelandic ancestry individuals	NA	1p36.32		rs144926861-A	0.01379	2E-14		0.264449	[0.2-0.33] unit increase	Illumina [7506463] (imputed)	N
625	chr1	5260756	5260757	rs12136793	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.32	NR	rs12136793-?	NR	4E-12				Affymetrix [NR]	N
625	chr1	5284767	5284768	rs7521315	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	1p36.32	AJAP1, MIR4417	rs7521315-A	0.6103	8E-6		0.1393	[0.078-0.201] unit decrease	NR [NR] (imputed)	N
625	chr1	5286926	5286927	rs79270576	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	1p36.32	NR	rs79270576-C	NR	2E-6	(random effect)	1.18	NR	NR [6904914] (imputed)	N
625	chr1	5337270	5337271	rs61759358	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.32	NR	rs61759358-?		5E-7				Illumina [4322238] (imputed)	N
625	chr1	5337270	5337271	rs61759358	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.32	NR	rs61759358-?		3E-8				Illumina [4322238] (imputed)	N
625	chr1	5337270	5337271	rs61759358	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.32	NR	rs61759358-?		1E-7				Illumina [4322238] (imputed)	N
625	chr1	5347887	5347888	rs114314840	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1p36.32	AJAP1	rs114314840-G	0.03	4E-6	(African American)	0.57	0.33-0.81 unit increase	Illumina [NR] (imputed)	N
625	chr1	5354843	5354844	rs912988	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	1p36.32	intergenic	rs912988-T	0.3630374	6E-6	(% improvement - SSRI treated - 2 weeks)	0.1825	[0.1-0.26] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
626	chr1	5489866	5489867	rs12735700	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	1p36.31	NR	rs12735700-G		8E-6		0.0931	[0.053-0.133] SD units increase	NR [10700000] (imputed)	N
627	chr1	5612036	5612037	rs115235853	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1p36.31	MIR4417	rs115235853-T	0.0308	5E-6		0.0822	[0.047-0.117] unit increase	Affymetrix, Illumina [NR] (imputed)	N
627	chr1	5635723	5635724	rs904525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.31	KCNAB2	rs904525-?	NR	9E-6	(tyrosine)	0.15432146	[0.086-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
628	chr1	5661008	5661009	rs7528859	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	1p36.31	intergenic	rs7528859-A	0.4	5E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
628	chr1	5707815	5707816	rs4845812	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	1p36.31	AK125078	rs4845812-T		5E-6		0.2917	unit decrease	Illumina [5767231] (imputed)	N
628	chr1	5743195	5743196	rs7542260	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	1p36.31	intergenic	rs7542260-T	0.902	4E-11		1.1862396	NR	Illumina [7742602] (imputed)	N
629	chr1	5782720	5782721	rs10907212	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.31	NR	rs10907212-?	NR	2E-11				Affymetrix [NR]	N
629	chr1	5811123	5811124	rs4433399	32503578	Yang DW	2020-06-05	J Transl Med	Genome-wide association study identifies genetic susceptibility loci and pathways of radiation-induced acute oral mucositis.	Response to radiotherapy in nasopharyngeal carcinoma (acute oral mucositis)	349 East Asian ancestry cases, 1,118 East Asian ancestry treated controls	NA	1p36.31	MIR4417, MIR4689	rs4433399-?	NR	9E-6		1.69	[1.34-2.12]	Illumina [3968928] (imputed)	N
630	chr1	5913620	5913621	rs548726	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1p36.31	NPHP4	rs548726-?	NR	5E-7				Affymetrix, Illumina [~ 1300000]	N
630	chr1	5914244	5914245	rs76338894	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	1p36.31	AK125078, MIR4689	rs76338894-T	0.949	5E-7		0.296253	[0.18-0.41] unit increase	Illumina [7433384] (imputed)	N
630	chr1	5976412	5976413	rs150957294	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p36.31	NPHP4	rs150957294-A	0.0153366420784642	4E-6	(G_unclassified_P_Proteobacteria_RNT)	0.629128	[0.36-0.9] unit increase	Illumina [7711310] (imputed)	N
631	chr1	6035429	6035430	rs75886247	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease in type 2 diabetes	3,094 European ancestry cases, 2,906 European ancestry controls	5,406 European ancestry cases, 8,744 European ancestry controls, 2,964 Asian cases, 3,323 Asian controls, 207 Chinese ancestry cases, 273 Chinese ancestry controls, 58 Indian ancestry cases, 107 Indian ancestry controls, 103 Malay ancestry cases, 56 Malay ancestry controls controls	1p36.31	NR	rs75886247-?		5E-6	(EA)	1.45	[1.29-1.63]	Affymetrix, Illumina [up to 9343778] (imputed)	N
631	chr1	6149121	6149122	rs2273042	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1p36.31	RNF207	rs2273042-A	0.11	7E-9		0.94	[0.63-1.25] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
631	chr1	6157474	6157475	rs182856833	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p36.31	NR	rs182856833-?	NR	3E-6		0.454903	[0.26-0.65] unit increase	NR [13958389] (imputed)	N
632	chr1	6204160	6204161	rs17436816	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	1p36.31		rs17436816-A	0.112	3E-6		2.0		Illumina [5411261] (imputed)	N
632	chr1	6258146	6258147	rs2247392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.31		rs2247392-T	NR	3E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1p36.31		rs10864434-A	0.602	3E-27		0.059	[0.049-0.069] bpm decrease	Affymetrix [9800000] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1p36.31		rs10864434-A	0.601725	6E-13	(male)	0.0611934	[0.045-0.078] bpm decrease	Affymetrix [9800000] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1p36.31		rs10864434-A	0.601725	3E-16	(female)	0.0634799	[0.048-0.079] bpm decrease	Affymetrix [9800000] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p36.31	RPL22	rs10864434-A	0.599	5E-18	(women)	0.064	[0.05-0.078] unit decrease	Affymetrix [~ 9000000] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p36.31	RPL22	rs10864434-A	0.599	2E-11	(men)	0.052	[0.036-0.068] unit decrease	Affymetrix [~ 9000000] (imputed)	N
632	chr1	6262230	6262231	rs10864434	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p36.31	RNF207	rs10864434-A	0.601	6E-28		0.058	[0.048-0.068] unit decrease	Affymetrix [~ 9000000] (imputed)	N
632	chr1	6263791	6263792	rs11121483	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	1p36.31	RNF207	rs11121483-G	0.392	5E-12		1.508	[1.08-1.94] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
632	chr1	6272136	6272137	rs709208	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	1p36.31	RNF207	rs709208-A	0.679	9E-11		0.04	[0.028-0.052] unit decrease	NR [~ 9000000] (imputed)	N
632	chr1	6272136	6272137	rs709208	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	1p36.31	RNF207	rs709208-A	0.679	2E-11		0.041	[0.029-0.053] unit decrease	NR [~ 9000000] (imputed)	N
632	chr1	6272136	6272137	rs145358377	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1p36.31	RNF207, ICMT	rs145358377-GA	0.36	2E-11		0.2594	[0.18-0.34] unit decrease	Affymetrix [19941912] (imputed)	N
632	chr1	6272174	6272175	rs79344881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p36.31		rs79344881-A	0.034664	5E-8		0.0320382	[0.021-0.044] unit decrease	Illumina [13479295] (imputed)	N
632	chr1	6278413	6278414	rs709209	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p36.31	RNF207	rs709209-A	0.6386	2E-9		0.1928	[0.13-0.26] mmHg increase	Illumina [242296]	N
632	chr1	6279369	6279370	rs846111	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	1p36.31		rs846111-G	0.73	7E-25		0.067	[0.053-0.081] unit decrease	Affymetrix [NR]	N
632	chr1	6279369	6279370	rs846111	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	1p36.31		rs846111-G	0.73	8E-18		0.057	[0.043-0.071] unit decrease	Affymetrix [NR]	N
632	chr1	6279369	6279370	rs846111	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	1p36.31	RNF207	rs846111-G	0.73309	6E-7		0.255081	[0.16-0.35] unit increase	Affymetrix [8590397] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	9E-18	(204 ms)	0.0513448	[0.039-0.064] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	9E-15	(196 ms)	0.0463194	[0.034-0.059] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	8E-25	(244 ms)	0.0639078	[0.051-0.076] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	8E-23	(220 ms)	0.0596476	[0.047-0.072] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	8E-17	(200 ms)	0.0505558	[0.038-0.063] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	8E-12	(270 ms)	0.0435038	[0.031-0.056] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	7E-22	(216 ms)	0.0585699	[0.046-0.071] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	7E-21	(212 ms)	0.0561008	[0.044-0.068] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	7E-15	(264 ms)	0.0495789	[0.037-0.062] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	7E-14	(16 ms)	0.0469712	[0.035-0.059] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	6E-13	(14 ms)	0.0454938	[0.033-0.058] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	5E-9	(180 ms)	0.0336025	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	5E-27	(234 ms)	0.0661157	[0.054-0.079] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	5E-27	(232 ms)	0.0662487	[0.054-0.079] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	5E-25	(248 ms)	0.064072	[0.052-0.076] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	5E-25	(224 ms)	0.0630265	[0.051-0.075] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	4E-8	(276 ms)	0.0348447	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	4E-21	(210 ms)	0.0564451	[0.044-0.069] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	4E-18	(260 ms)	0.0547149	[0.042-0.067] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	4E-13	(18 ms)	0.0450025	[0.033-0.057] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	3E-26	(238 ms)	0.0654916	[0.053-0.078] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	3E-22	(218 ms)	0.0589435	[0.047-0.071] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	3E-21	(208 ms)	0.0572957	[0.045-0.07] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	3E-16	(262 ms)	0.0518554	[0.039-0.064] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	3E-12	(188 ms)	0.0415726	[0.029-0.054] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-9	(274 ms)	0.0379992	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-26	(236 ms)	0.0656379	[0.053-0.078] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-26	(230 ms)	0.0654603	[0.053-0.078] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-25	(246 ms)	0.0647814	[0.052-0.077] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-25	(226 ms)	0.0635616	[0.051-0.076] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-24	(222 ms)	0.0618096	[0.049-0.074] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-23	(250 ms)	0.0620698	[0.05-0.074] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-22	(252 ms)	0.0609696	[0.049-0.073] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-21	(214 ms)	0.0573964	[0.045-0.07] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-20	(256 ms)	0.0581626	[0.046-0.071] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-19	(258 ms)	0.0566806	[0.044-0.069] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-19	(206 ms)	0.0540143	[0.042-0.066] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-17	(202 ms)	0.0513601	[0.039-0.064] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	2E-15	(198 ms)	0.0480106	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-25	(240 ms)	0.0650066	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-25	(228 ms)	0.0643005	[0.052-0.077] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-24	(242 ms)	0.0638731	[0.051-0.076] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-21	(254 ms)	0.0598545	[0.047-0.072] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-13	(266 ms)	0.0472714	[0.035-0.06] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-12	(268 ms)	0.0453628	[0.033-0.058] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.31	RPL22, RNF207, ICMT	rs846111-G	0.734546	1E-10	(272 ms)	0.0410812	[0.029-0.054] unit increase	Affymetrix [10000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1p36.31	RNF207	rs846111-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
632	chr1	6279369	6279370	rs846111	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1p36.31	NR	rs846111-?	NR	2E-11		1.919251	[1.36-2.48] unit increase	Illumina [26659972] (imputed)	N
632	chr1	6279369	6279370	rs846111	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1p36.31	RNF207	rs846111-C	0.283	7E-40		1.73	[1.48-1.98] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
632	chr1	6279369	6279370	rs846111	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1p36.31	RNF207	rs846111-C	0.29	4E-16		1.49	[1.00-1.98] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
632	chr1	6279369	6279370	rs846111	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1p36.31	NPHP4, CHDS, ACOT7, PLEKHG5, KLH21, RNF207	rs846111-C	0.28	1E-16		1.75	[1.41-2.09] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
633	chr1	6296237	6296238	rs9970334	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	1p36.31	ICMT	rs9970334-G	0.447393	4E-8		0.6965627	[0.45-0.95] beats per minute increase	Illumina [24111857] (imputed)	N
633	chr1	6299822	6299823	rs7531322	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1p36.31	RNF207	rs7531322-C	0.3	1E-12		1.73	[1.26-2.2] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
633	chr1	6367218	6367219	rs11121611	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	1p36.31	ACOT7	rs11121611-T	0.799	2E-6	(Hispanic/Latino+AfricanAmerican)	1.82	[1.43-2.33]	Affymetrix [~ 8700000] (imputed)	N
633	chr1	6395188	6395189	rs150396451	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	1p36.31	ACOT7	rs150396451-A	0.1682	3E-8	(C6)	0.1379	[0.09-0.186] unit increase	Illumina [~ 47000000] (imputed)	N
633	chr1	6417930	6417930	rs766839874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.31	ACOT7	rs766839874-CTT	NR	3E-8		0.0271746	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
633	chr1	6417930	6417930	rs766839874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.31	ACOT7	rs766839874-CTT	NR	2E-9		0.0298122	[0.02-0.039] unit increase	Affymetrix [321169] (imputed)	N
634	chr1	6424884	6424885	rs188591855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.31	ACOT7	rs188591855-A	NR	3E-9		0.0285167	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
634	chr1	6502547	6502548	rs6685095	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	1p36.31	ESPN	rs6685095-C	NR	6E-6		4.519	NR z score decrease	Illumina [7839440] (imputed)	N
634	chr1	6512546	6512547	rs2986736	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p36.31	ESPN	rs2986736-C	NR	9E-17		1.1200718	NR	Affymetrix, Illumina [8278136] (imputed)	N
634	chr1	6530188	6530189	rs3007421	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p36.31	PLEKHG5	rs3007421-A	0.13	5E-10		1.11		Illumina [161311]	N
635	chr1	6577870	6577871	rs4243830	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p36.31	NOL9	rs4243830-C	0.11	8E-6	(EA, men)	0.03	[0.017-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
635	chr1	6578530	6578531	rs12739181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.31		rs12739181-?	NR	4E-10				NR [~ 8900000] (imputed)	N
635	chr1	6599538	6599541	rs112086769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.31	NOL9	rs112086769-A	0.880307	3E-10		0.021487711	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr1	6601335	6601336	rs12760251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.31	NOL9	rs12760251-T	0.869582	9E-18		0.028046148	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr1	6604584	6604585	rs9793308	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	1p36.31	NR	rs9793308-G	NR	3E-6		0.0835	[0.049-0.118] SD units decrease	NR [10700000] (imputed)	N
635	chr1	6604620	6604621	rs77573793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.31	NOL9	rs77573793-A	0.869862	2E-10		0.0209161	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
635	chr1	6604620	6604621	rs77573793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.31	NR	rs77573793-G	0.869898	3E-10		0.018575	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
635	chr1	6604620	6604621	rs77573793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.31	NR	rs77573793-G	0.858339	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
635	chr1	6604620	6604621	rs77573793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p36.31	NR	rs77573793-G	0.870135	2E-11		0.021342	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
635	chr1	6609563	6609565	rs34630031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.31	NOL9	rs34630031-C	0.131602	1E-11		0.022305278	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr1	6609563	6609565	rs34630031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.31	NOL9	rs34630031-C	0.131598	4E-13		0.023848588	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr1	6631430	6631431	rs11587438	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p36.31	NR	rs11587438-T	NR	1E-10		0.0229	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
635	chr1	6631430	6631431	rs11587438	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1p36.31	TAS1R1	rs11587438-T	0.83	4E-6	(basophil count)	0.075	[0.05-0.11] unit increase	Illumina [2178645] (imputed)	N
635	chr1	6637170	6637171	rs12040340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.31		rs12040340-A	NR	1E-11		0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
635	chr1	6637170	6637171	rs12040340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.31		rs12040340-?	NR	6E-10				NR [~ 8900000] (imputed)	N
635	chr1	6649227	6649228	rs2229330	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p36.31	ZBTB48	rs2229330-T	0.92759	2E-13		0.0197417	[0.014-0.025] unit decrease	Affymetrix [12370749]	N
635	chr1	6651455	6651456	rs397979011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p36.31		rs397979011-C	NR	2E-15		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
635	chr1	6659017	6659018	rs891958177	34626176	Malik R	2021-10-01	Brain	Whole-exome sequencing reveals a role of HTRA1 and EGFL8 in brain white matter hyperintensities.	White matter hyperintensity volume	17,830 individuals	NA	1p36.31		rs891958177-?	NR	1E-7		2.48	[1.58-3.38] unit decrease	NR [NR]	N
635	chr1	6659504	6659505	rs2232460	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.31	KLHL21	rs2232460-A	0.3343	3E-13		0.0138	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
635	chr1	6660348	6660349	rs12124126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.31		rs12124126-?	NR	5E-23				NR [~ 8900000] (imputed)	N
635	chr1	6661731	6661732	rs12028517	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p36.31		rs12028517-C	0.67	2E-9				NR [NR] (imputed)	N
635	chr1	6661731	6661732	rs12028517	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p36.31		rs12028517-C	0.67	4E-13		0.011	% increase	NR [NR] (imputed)	N
635	chr1	6669969	6669970	rs12741141	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p36.31	NR	rs12741141-G	0.3615	1E-16		0.0395	[0.03-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
635	chr1	6672728	6672729	rs11583755	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.31	NR	rs11583755-C	0.3287	1E-19		0.0369	[0.029-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
635	chr1	6676039	6676040	rs12725767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p36.31		rs12725767-G	NR	2E-11		0.0349	[0.025-0.045] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
635	chr1	6676039	6676040	rs12725767	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p36.31	PHF13	rs12725767-G	0.354298	2E-9		0.035128027	[0.024-0.047] unit increase	Affymetrix [7288503] (imputed)	N
635	chr1	6676484	6676485	rs12731208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.31		rs12731208-G	NR	5E-12		0.0371	[0.027-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
635	chr1	6676484	6676485	rs12731208	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p36.31	PHF13	rs12731208-G	0.353303	5E-11		0.041495997	[0.029-0.054] unit increase	Affymetrix [7288503] (imputed)	N
635	chr1	6676484	6676485	rs12731208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.31		rs12731208-?	NR	2E-8				NR [~ 8900000] (imputed)	N
635	chr1	6677063	6677064	rs10779795	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.31	PHF13	rs10779795-A	0.664086	6E-24		0.0195791	[0.016-0.023] unit increase	NR [13737936] (imputed)	N
635	chr1	6677063	6677064	rs10779795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.31		rs10779795-?	NR	2E-21				NR [~ 8900000] (imputed)	N
635	chr1	6678863	6678864	rs9661802	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p36.31	PHF13	rs9661802-A	0.6649	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
635	chr1	6678863	6678864	rs9661802	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.31	PHF13	rs9661802-A	0.6649	6E-23		0.0247	[0.02-0.03] unit increase	Affymetrix [19819130] (imputed)	N
635	chr1	6678863	6678864	rs9661802	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.31	PHF13	rs9661802-A	0.6649	7E-6		0.0111	[0.0062-0.016] unit increase	Affymetrix [19819130] (imputed)	N
635	chr1	6678863	6678864	rs9661802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.31		rs9661802-?	NR	3E-10				NR [~ 8900000] (imputed)	N
635	chr1	6681274	6681275	rs12034227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.31		rs12034227-C	NR	2E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
635	chr1	6683239	6683240	rs14057	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	1p36.31	RNF207	rs14057-A	0.35	3E-10		0.303	[0.20-0.40] unit decrease	Affymetrix [~ 9800000] (imputed)	N
636	chr1	6684905	6684906	rs2076363	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.31	THAP3	rs2076363-C	0.663112	3E-8		0.00803062	[0.0052-0.0109] unit decrease	Affymetrix [12370749]	N
636	chr1	6693641	6693641	rs3830771	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.31		rs3830771-?	NR	9E-21		0.0194123	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
636	chr1	6694926	6694927	rs2294532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.31		rs2294532-T	NR	1E-9		0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
636	chr1	6701977	6701978	rs200448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1p36.31		rs200448-?	NR	3E-8				NR [~ 8900000] (imputed)	N
636	chr1	6715389	6715390	rs6577584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.31	NR	rs6577584-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
636	chr1	6715389	6715390	rs6577584	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.31	NA	rs6577584-T	0.6589	3E-11		0.0118	[0.0083-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
636	chr1	6715439	6715440	rs6577585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.31		rs6577585-?	NR	5E-9				NR [~ 8900000] (imputed)	N
636	chr1	6716290	6716291	rs35724443	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p36.31	DNAJC11	rs35724443-T	NR	6E-6		0.111911	[0.063-0.16] unit increase	Illumina [at least 950000] (imputed)	N
636	chr1	6725229	6725230	rs200450	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	1p36.31	THAP3	rs200450-G	NR	8E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
636	chr1	6737211	6737212	rs189918	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p36.31	NR	rs189918-C	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
636	chr1	6747896	6747897	rs277686	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p36.31		rs277686-C	0.642	4E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
636	chr1	6790049	6790050	rs147313503	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	1p36.31		rs147313503-C	0.0032	4E-9		0.6487	[0.43-0.86] unit increase	Affymetrix, Illumina [NR] (imputed)	N
636	chr1	6799094	6799096	rs145920989	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	1p36.31	LOC100505887	rs145920989-G		8E-6		1.8	[NR]	Illumina [up to 9464381] (imputed)	N
637	chr1	6828126	6828127	rs12752369	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1p36.31		rs12752369-C	NR	2E-6		3.8057	[2.26-5.35] unit increase	Illumina [NR] (imputed)	N
637	chr1	6829947	6829948	rs11122142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p36.31	Intergenic	rs11122142-A	0.3949	8E-13	(MTAG)	0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
637	chr1	6829947	6829948	rs11122142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p36.31	Intergenic	rs11122142-A	0.3949	6E-13		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
637	chr1	6846478	6846479	rs11122147	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.31		rs11122147-G	0.13	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
637	chr1	6853090	6853091	rs34394051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.31		rs34394051-A	0.8429	2E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
637	chr1	6853090	6853091	rs34394051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p36.31	Intergenic	rs34394051-A	0.8429	8E-9	(MTAG)	0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
637	chr1	6858857	6858858	rs11122154	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.31	CAMTA1	rs11122154-A	0.1665	3E-15		0.02	[0.015-0.025] unit increase	Affymetrix [18391927] (imputed)	N
637	chr1	6863772	6863773	rs11122155	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p36.31	NR	rs11122155-?	NR	4E-7		0.0088635	[0.0054-0.0123] unit decrease	Affymetrix [805426] (imputed)	N
637	chr1	6864186	6864187	rs11122156	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.31		rs11122156-C	0.17	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
637	chr1	6867841	6867842	rs12735232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p36.31		rs12735232-?	NR	7E-10				NR [~ 8900000] (imputed)	N
637	chr1	6905710	6905711	rs185305928	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nonsteroidal anti-inflammatory drugs)	144 European ancestry cases, 10,588 European ancestry controls	NA	1p36.31		rs185305928-?		3E-7		4.55	2.55-8.11	Illumina [505740] (imputed)	N
638	chr1	6960195	6960196	rs6691442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p36.31	Intergenic	rs6691442-A	0.5343	4E-9	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
638	chr1	6963954	6963955	rs185523979	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1p36.31	NR	rs185523979-?	NR	6E-12		6.868	NR z score decrease	Illumina [at least 830937] (imputed)	N
638	chr1	7014539	7014540	rs12239076	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p36.31	CAMTA1	rs12239076-G	NR	7E-7		0.095568	[0.058-0.133] unit decrease	Illumina [at least 950000] (imputed)	N
638	chr1	7016602	7016604	rs200252353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.31	NR	rs200252353-D	0.428244	2E-10		0.01288	[0.0089-0.0169] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
638	chr1	7028841	7028842	rs2175171	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p36.31	CAMTA1	rs2175171-G	0.443375	4E-8		0.00776553	[0.005-0.0105] unit decrease	Affymetrix [12370749]	N
638	chr1	7031224	7031225	rs6685497	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1p36.31	CAMTA1	rs6685497-A	0.428177	8E-9		5.772	unit increase	NR [10847151] (imputed)	N
638	chr1	7055023	7055024	rs12043302	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	1p36.31	NR	rs12043302-A		5E-6				NR [525577]	N
639	chr1	7092781	7092782	rs2412208	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	1p36.31	CAMTA1	rs2412208-?		4E-8		0.1617	[NR] unit decrease	Illumina [7174392] (imputed)	N
639	chr1	7094424	7094425	rs4590691	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.31	NR	rs4590691-?	NR	9E-9	(right cerebellum white matter)			NR [9227495] (imputed)	N
639	chr1	7113111	7113112	rs11120822	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1p36.31	CAMTA1	rs11120822-C	NR	1E-6		0.0931	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
639	chr1	7179478	7179479	rs7532024	32355309	Cha PC	2020-05-01	J Hum Genet	Genome-wide association study identifies zonisamide responsive gene in Parkinson's disease patients.	Levodopa wearing off effect (time symptoms uncontrolled) in Parkinson's disease (response to zonisamide)	67 Japanese ancestry responders, 133 Japanese ancestry poor responders	NA	1p36.23	CAMTA1	rs7532024-C	0.55	4E-6		3.3112586	[NR]	Illumina [611492]	N
640	chr1	7292228	7292229	rs7524258	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	1p36.23	CAMTA1	rs7524258-T	0.40	8E-6		1.16	[NR]	Illumina [7659573] (imputed)	N
640	chr1	7316030	7316031	rs7512599	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (ICD-10 coded)	8,276 British ancestry cases, 209,308 British ancestry controls	NA	1p36.23	NR	rs7512599-A	0.7079	5E-7		0.0032	[0.002-0.0044] unit increase	NR [7666894] (imputed)	N
642	chr1	7487276	7487277	rs10864302	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	1p36.23	CAMTA1	rs10864302-?	NR	1E-10		1.091703	[1.06-1.12]	Illumina [13729857] (imputed)	N
642	chr1	7504140	7504141	rs75562159	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	1p36.23	CAMTA1	rs75562159-A	0.01	9E-6		2.7027025	[2.27-3.13]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
642	chr1	7521584	7521585	rs1616122	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	1p36.23	CAMTA1, VAMP3	rs1616122-T	0.506	5E-6	(Orange)	1.85	[1.41-2.42]	Affymetrix [~ 2500000] (imputed)	N
642	chr1	7522335	7522336	rs1962545	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p36.23	CAMTA1	rs1962545-T	0.479941	4E-10		0.0124344	[0.0084-0.0165] unit increase	NR [16516521] (imputed)	N
642	chr1	7522335	7522336	rs1962545	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p36.23	NR	rs1962545-C	0.519	9E-8		0.00578609	[0.0037-0.0079] unit increase	NR [9732723] (imputed)	N
642	chr1	7522335	7522336	rs1962545	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p36.23	NR	rs1962545-C	0.52	3E-8		0.00860025	[0.0056-0.0116] unit increase	NR [9732723] (imputed)	N
642	chr1	7526485	7526486	rs1193237	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p36.23		rs1193237-G	0.439	3E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix [up to 90000000] (imputed)	N
642	chr1	7528845	7528846	rs1149332	24770850	Cousminer DL	2014-04-25	Hum Mol Genet	Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.	Puberty onset	6,147 European ancestry girls, 3,769 European ancestry boys	Up to 1,376 European ancestry individuals	1p36.23	CAMTA1	rs1149332-T	0.26	5E-6		0.062	[0.035-0.089] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
642	chr1	7532289	7532290	rs1149336	24770850	Cousminer DL	2014-04-25	Hum Mol Genet	Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.	Puberty onset (breast development)	6,147 European ancestry girls	NA	1p36.23	CAMTA1	rs1149336-T	0.27	9E-7		0.09	[0.055-0.125] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
642	chr1	7550344	7550345	rs1193232	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p36.23		rs1193232-G	0.544	3E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
642	chr1	7558251	7558251	rs112193369	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	1p36.23	NR	rs112193369-?	0.02	1E-7		4.09	[2.43-6.90]	Affymetrix, Illumina [~ 6000000] (imputed)	N
643	chr1	7622458	7622459	rs142872577	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.23	CAMTA1	rs142872577-A	0.0032	1E-14		1.7468		Affymetrix [11880941] (imputed)	N
643	chr1	7652386	7652387	rs6699651	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	1p36.23	CAMTA1	rs6699651-T	0.106	8E-7				Affymetrix [432921]	N
643	chr1	7654201	7654202	rs140401531	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p36.23	CAMTA1	rs140401531-A	0.874	2E-6	(AA)	0.137	NR unit increase	Illumina [NR] (imputed)	N
643	chr1	7721359	7721360	rs3011925	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.23	NR	rs3011925-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
643	chr1	7723956	7723957	rs12128526	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.23	NR	rs12128526-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
643	chr1	7723956	7723957	rs12128526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.23		rs12128526-?	NR	2E-10				NR [~ 8900000] (imputed)	N
643	chr1	7727853	7727854	rs1891215	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.23	NA	rs1891215-T	0.5397	7E-11		0.0111	[0.0078-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
644	chr1	7737098	7737099	rs4908676	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p36.23		rs4908676-G	0.46	1E-8				NR [NR] (imputed)	N
644	chr1	7737098	7737099	rs4908676	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p36.23		rs4908676-G	0.46	2E-12		0.01	% increase	NR [NR] (imputed)	N
644	chr1	7738179	7738180	rs4908677	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.23	CAMTA1	rs4908677-C	0.520132	3E-8		0.00768754	[0.005-0.0104] unit decrease	Affymetrix [12370749]	N
644	chr1	7739249	7739250	rs4908678	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1p36.23	CAMTA1	rs4908678-T	0.626	5E-10		0.1124	[0.077-0.148] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
644	chr1	7744558	7744559	rs76626729	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.23	CAMTA1	rs76626729-A	0.0071	9E-22		1.2286		Affymetrix [11880941] (imputed)	N
644	chr1	7744558	7744559	rs76626729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p36.23		rs76626729-?	NR	3E-9				NR [~ 8900000] (imputed)	N
644	chr1	7767463	7767464	rs7534398	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	1p36.23	CAMTA1	rs7534398-A	NR	2E-8		1.048		Affymetrix [14661600] (imputed)	N
644	chr1	7784394	7784395	rs12741294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.23	NR	rs12741294-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
644	chr1	7784901	7784902	rs12028339	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.23		rs12028339-A	0.3	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
644	chr1	7784901	7784902	rs12028339	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.23	NR	rs12028339-A	0.3405	1E-9				NR [9056863] (imputed)	N
644	chr1	7784901	7784902	rs12028339	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p36.23	NR	rs12028339-A	NR	1E-8		5.676	z score increase	Affymetrix [10847151] (imputed)	N
644	chr1	7790547	7790548	rs12137398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p36.23		rs12137398-?	NR	4E-8				NR [~ 8900000] (imputed)	N
644	chr1	7790547	7790548	rs12137398	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p36.23	NR	rs12137398-T	NR	9E-9		5.745	z score increase	Affymetrix [10847151] (imputed)	N
644	chr1	7790547	7790548	rs12137398	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p36.23	NR	rs12137398-T	NR	1E-8		0.01683	[0.011-0.023] unit increase	Affymetrix [10847151] (imputed)	N
644	chr1	7790547	7790548	rs12137398	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p36.23	CAMTA1	rs12137398-T	0.19435	1E-9		6.11	z score increase	NR [10847151] (imputed)	N
644	chr1	7791460	7791461	rs12130857	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p36.23	NR	rs12130857-A	0.325	8E-12		0.0079241	[0.0057-0.0102] unit decrease	NR [9732723] (imputed)	N
644	chr1	7791460	7791461	rs12130857	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p36.23	NR	rs12130857-A	0.324968	4E-11	(Conditioned on chr1:8484823)	0.018003138	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
644	chr1	7794288	7794289	rs11121012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.23	CAMTA1	rs11121012-G	0.645524	1E-28		0.025989546	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr1	7794288	7794289	rs11121012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.23	CAMTA1	rs11121012-G	0.645558	3E-24		0.023904577	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
644	chr1	7794288	7794289	rs11121012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.23	CAMTA1	rs11121012-G	0.645522	6E-42		0.031679917	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr1	7794288	7794289	rs11121012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.23	NR	rs11121012-A	0.358727	6E-50				Affymetrix, Illumina [17210439] (imputed)	N
644	chr1	7794288	7794289	rs11121012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.23	NR	rs11121012-A	0.354884	2E-50		0.029845	[0.026-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
644	chr1	7794288	7794289	rs11121012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p36.23	CAMTA1	rs11121012-G	0.6446	9E-10		0.0231877	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr1	7794288	7794289	rs11121012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.23	CAMTA1	rs11121012-G	0.6446	9E-18		0.03271406	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr1	7799763	7799764	rs58333527	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			CAMTA1	rs58333527-G	0.2119	4E-14		0.0768934	[0.057-0.097] unit decrease	Affymetrix [8165723] (imputed)	N
644	chr1	7826346	7826347	rs697672	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	1p36.23	CAMTA1, VAMP3	rs697672-C	0.082	2E-6		0.16	unit decrease	Illumina [5510858] (imputed)	N
644	chr1	7836658	7836659	rs11121022	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1p36.23	PER3, VAMP3	rs11121022-C	0.42	2E-8		1.07	[1.04-1.09]	Illumina [7427422] (imputed)	N
644	chr1	7843710	7843711	rs571084788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p36.23	NR	rs571084788-T	0.807497	1E-11		0.0243286	[0.017-0.031] unit increase	Affymetrix [16580851] (imputed)	N
644	chr1	7848942	7848943	rs228726	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.23	PER3	rs228726-A	0.1001	3E-26		0.0299295	[0.024-0.035] unit decrease	Affymetrix [11880941] (imputed)	N
644	chr1	7858107	7858108	rs61773374	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p36.23	NR	rs61773374-G	0.195	3E-14		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
645	chr1	7869952	7869953	rs150812083	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.23		rs150812083-C	0.995398	4E-22		0.153	[0.12-0.18] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
645	chr1	7869952	7869953	rs150812083	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.23	PER3	rs150812083-C	0.995	7E-40		0.15862	[0.14-0.18] unit decrease	Affymetrix [11880941] (imputed)	N
645	chr1	7879062	7879063	rs2797685	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1p36.23	VAMP3	rs2797685-A	0.19	7E-9		1.05	[1.01-1.10]	Affymetrix, Illumina [953241] (imputed)	N
645	chr1	7884524	7884525	rs61773390	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.23		rs61773390-T	0.1955	3E-27		0.029	[0.023-0.035] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
645	chr1	7884524	7884525	rs61773390	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.23	PER3	rs61773390-T	0.1931	5E-41		1.065		Affymetrix [11880941] (imputed)	N
645	chr1	7884524	7884525	rs61773390	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.23	PER3	rs61773390-T	0.1931	5E-41		1.0681199		Affymetrix [11880941] (imputed)	N
645	chr1	7888437	7888438	rs17374439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p36.23		rs17374439-?	NR	5E-24				NR [~ 8900000] (imputed)	N
645	chr1	7893510	7893511	rs148173313	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p36.23	NR	rs148173313-A	0.005527	9E-11		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
645	chr1	7897227	7897228	rs228654	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.23		rs228654-A	0.09752	3E-16		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
645	chr1	7909372	7909373	rs1989147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p36.23	NR	rs1989147-C	0.806791	7E-14		0.0235512	[0.017-0.03] unit increase	Affymetrix [16585745] (imputed)	N
645	chr1	7913028	7913029	rs34305100	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	1p36.23	NR	rs34305100-G	0.191483734461782	2E-6				NR [9276018] (imputed)	N
645	chr1	7917075	7917076	rs707475	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.23	NR	rs707475-A	0.393	1E-7	(EA)	0.035	[0.022-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
645	chr1	7950847	7950848	rs11582820	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.23	UTS2	rs11582820-T	0.05249	1E-13		1.131	NR	Affymetrix [9154080] (imputed)	N
645	chr1	7956572	7956573	rs41528652	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.23	NR	rs41528652-?	NR	5E-8				Affymetrix [NR]	N
645	chr1	7961205	7961206	rs227163	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.23	TNFRSF9	rs227163-T	0.58	5E-6	(East Asian)	0.11519	[0.066-0.165] unit decrease	Illumina [8380626] (imputed)	N
645	chr1	7961205	7961206	rs227163	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.23	TNFRSF9	rs227163-C	0.42	3E-9	(East Asian)	1.11	[1.08-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
645	chr1	7974400	7974400	rs1284800578	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs1284800578-G	0.101	3E-8	(JAK3)	0.03027	NR unit increase	Illumina [1671387] (imputed)	N
646	chr1	8002099	8002102	rs201395463	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1p36.23	TNFRSF9	rs201395463-A	0.0104	8E-7		0.2995	[0.18-0.42] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
646	chr1	8004439	8004440	rs34878017	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.23	PARK7	rs34878017-T	0.824375	1E-6	(PARK7, 9845_33_3)	0.15653369	[0.093-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
646	chr1	8007594	8007595	rs76648881	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.23	TNFRSF9	rs76648881-C	0.02603	2E-23		1.248	NR	Affymetrix [9154080] (imputed)	N
646	chr1	8015049	8015050	rs72633102	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	1p36.23	PARK7	rs72633102-T	NR	2E-6		1.9026	NR	Illumina [up to 1244428] (imputed)	N
646	chr1	8017650	8017651	rs225116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p36.23		rs225116-A	NR	2E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
646	chr1	8021739	8021740	rs17523802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.23	NR	rs17523802-?	NR	9E-7		0.0545	[0.033-0.076] unit increase	Illumina [at least 560000] (imputed)	N
646	chr1	8021972	8021973	rs35675666	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.23	TNFRSF9	rs35675666-G	0.838	1E-15		1.112	[1.07-1.156]	Affymetrix, Illumina [1230000] (imputed)	N
646	chr1	8021972	8021973	rs35675666	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.23	PARK7, TNFRSF9, ERFFI1, UTS2	rs35675666-G	0.83	5E-9		1.08	[1.02-1.15]	Affymetrix, Illumina [~ 1100000] (imputed)	N
646	chr1	8022196	8022197	rs3766606	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p36.23	VAMP3, UTS2, PARK7, ERRFI1, PER3, TNFRSF9, CAMTA1	rs3766606-?		4E-9				Illumina [9578670] (imputed)	N
646	chr1	8022196	8022197	rs3766606	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p36.23	VAMP3, UTS2, PARK7, ERRFI1, PER3, TNFRSF9, CAMTA1	rs3766606-?		1E-12				Illumina [9725440] (imputed)	N
646	chr1	8022196	8022197	rs3766606	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1p36.23	VAMP3, UTS2, PARK7, ERRFI1, PER3, TNFRSF9, CAMTA1	rs3766606-?		3E-6				Illumina [9560910] (imputed)	N
646	chr1	8022196	8022197	rs3766606	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.23	PARK7	rs3766606-?	NR	9E-14	(subset analysis)			Illumina [130052]	N
646	chr1	8022196	8022197	rs3766606	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.23	NR	rs3766606-C	0.83	6E-14	(EA)	1.143554		Affymetrix, Illumina [~ 9000000] (imputed)	N
646	chr1	8022196	8022197	rs3766606	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.23	NR	rs3766606-C	0.83	5E-9	(EA)	1.1060587	[1.07-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
646	chr1	8029800	8029801	rs185174116	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-433 abundance in stool	5,959 Finnish ancestry individuals	NA	1p36.23		rs185174116-A	0.0596416	2E-8		0.178715	[0.12-0.24] unit increase	Illumina [7980478] (imputed)	N
646	chr1	8042825	8042826	rs161802	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	1p36.23	PARK7	rs161802-?	NR	2E-7		1.1111	[1.08-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
646	chr1	8046671	8046672	rs12727642	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.23	PARK7, TNFRSF9	rs12727642-A	0.19	9E-8		1.14	[1.09-1.20]	Illumina [292387]	N
646	chr1	8065944	8065945	rs147539868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	1p36.23	NR	rs147539868-?	NR	6E-6		0.0819	[0.046-0.117] unit increase	Illumina [at least 560000] (imputed)	N
646	chr1	8078308	8078309	rs400736	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants and depression	7,795 European ancestry responder cases, 191,173 European ancestry healthy controls	NA	1p36.23	ERRFI1	rs400736-?		2E-6		1.0857763	[1.05-1.12]	Illumina [~ 12000000] (imputed)	N
646	chr1	8080806	8080807	rs441467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.23	ERRFI1	rs441467-G	NR	2E-9		0.0243542	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
646	chr1	8080806	8080807	rs441467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.23		rs441467-?	NR	1E-9				NR [~ 8900000] (imputed)	N
646	chr1	8095499	8095500	rs225132	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.23	NR	rs225132-G	0.187	3E-6	(EA)	0.0375	[0.022-0.053] unit decrease	Illumina [~ 11800000] (imputed)	N
646	chr1	8095499	8095500	rs225132	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	1p36.23	ERRFI1	rs225132-?	NR	6E-8		1.1236	[1.08-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
646	chr1	8125490	8125491	rs138267314	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.23	ERRFI1, SLC45A1	rs138267314-T	0.0044999999999999485	6E-26		1.3460763		Affymetrix [11880941] (imputed)	N
647	chr1	8137399	8137400	rs60074929	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Heavy vaginal discharge	457 Japanese ancestry female cases, 5,277 Japanese ancestry female controls	471 Japanese ancestry female cases, 5,143 Japanese ancestry female controls	1p36.23	NR	rs60074929-A	0.15495693	8E-6		0.27508697	[0.15-0.4] unit increase	Affymetrix [536506]	N
647	chr1	8150637	8150638	rs72634258	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.23	NR	rs72634258-?	NR	1E-19	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
647	chr1	8151374	8151375	rs74053426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.23		rs74053426-A	0.01669	2E-8		0.5338	[0.35-0.72] unit increase	Illumina [18238311] (imputed)	N
647	chr1	8151374	8151375	rs74053426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.23		rs74053426-A	0.01669	1E-8		0.5419	[0.36-0.73] unit decrease	Illumina [18238311] (imputed)	N
647	chr1	8151374	8151375	rs74053426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.23		rs74053426-A	0.01669	2E-8		0.5456	[0.36-0.73] unit increase	Illumina [18238311] (imputed)	N
647	chr1	8151374	8151375	rs74053426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.23		rs74053426-A	0.01669	2E-8		0.5367	[0.35-0.72] unit decrease	Illumina [18238311] (imputed)	N
647	chr1	8151374	8151375	rs74053426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.23		rs74053426-A	0.01669	6E-9		0.5551	[0.37-0.74] unit decrease	Illumina [18238311] (imputed)	N
647	chr1	8168916	8168917	rs4325151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.23		rs4325151-?	NR	1E-18				NR [~ 8900000] (imputed)	N
647	chr1	8173368	8173369	rs7524424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1p36.23		rs7524424-T	NR	6E-9		0.0742	[0.049-0.099] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
647	chr1	8207578	8207579	rs80293268	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1p36.23	NR	rs80293268-C	0.0504	4E-10		1.21	[1.14-1.28]	Affymetrix, Illumina [7072771] (imputed)	N
647	chr1	8207578	8207579	rs80293268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.23		rs80293268-?	NR	7E-253				NR [~ 8900000] (imputed)	N
647	chr1	8207578	8207579	rs80293268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.23		rs80293268-?	NR	6E-25				NR [~ 8900000] (imputed)	N
647	chr1	8207578	8207579	rs80293268	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.23	NR	rs80293268-C	0.0405339	6E-24		0.0794066	[0.064-0.095] unit increase	NR [19129689] (imputed)	N
647	chr1	8207578	8207579	rs80293268	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	1p36.23	SLC45A1	rs80293268-C	0.047	1E-100		0.171	[0.16-0.18] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
647	chr1	8207578	8207579	rs80293268	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	1p36.23	ERRFI1, SLC45A1	rs80293268-C	0.04050092	9E-14		0.17242767	[0.13-0.22] unit decrease	Illumina [up to 9350000] (imputed)	N
647	chr1	8208572	8208573	rs74865018	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.23	NR	rs74865018-A	0.0745331	2E-17		0.050034	[0.038-0.062] unit increase	NR [19129689] (imputed)	N
647	chr1	8233269	8233270	rs149963466	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	1p36.23	intergenic	rs149963466-A	0.0016	3E-8		0.8677363	[0.56-1.18] mg/dl increase	Illumina [24111857] (imputed)	N
647	chr1	8237192	8237193	rs35589907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.23	NR	rs35589907-?	NR	2E-7		0.0438	[0.027-0.06] unit increase	Illumina [at least 560000] (imputed)	N
647	chr1	8243101	8243102	rs147458259	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	1p36.23	SLC45A1	rs147458259-T	0.01466	5E-8		1.39	NR	Affymetrix [9154080] (imputed)	N
647	chr1	8243101	8243102	rs147458259	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.23	SLC45A1	rs147458259-T	0.01466	3E-35		1.416	NR	Affymetrix [9154080] (imputed)	N
648	chr1	8263107	8263108	rs77905678	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.23	SLC45A1	rs77905678-T	0.008757	2E-17		1.366	NR	Affymetrix [9154080] (imputed)	N
648	chr1	8264111	8264112	rs417065	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1p36.23	SLC45A1, TNFRSF9	rs417065-A	0.258	8E-7		1.17	[1.1-1.24]	Illumina [up to 4778154] (imputed)	N
648	chr1	8266829	8266829	rs35395352	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	1p36.23	ERRFI1, SLC45A1	rs35395352-?	0.72	4E-8		0.03	[0.03-0.04] unit increase	Illumina [at least 560000] (imputed)	N
648	chr1	8268094	8268095	rs11121129	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	1p36.23	SLC45A1, TNFRSF9	rs11121129-A	0.287	2E-8		1.13		Illumina [111236] (imputed)	N
648	chr1	8269961	8269962	rs74562379	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	1p36.23	SLC45A1	rs74562379-C	0.960528	8E-11		0.9265732	NR	Affymetrix [~ 9600000] (imputed)	N
648	chr1	8275283	8275284	rs421490	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	1p36.23	SLC45A1	rs421490-A	0.882	3E-6		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr1	8290081	8290082	rs438650	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs438650-C	NR	2E-8		1.07	NR	NR [8016731] (imputed)	N
648	chr1	8291826	8291827	rs76164182	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	1p36.23	SLC45A1	rs76164182-C	0.018	3E-8	(EA)	0.21	[0.14-0.28] unit increase	Affymetrix [at least 897981] (imputed)	N
648	chr1	8298556	8298557	rs72635742	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs72635742-A	0.02962	3E-8	(CTSB)	0.3652	NR unit increase	Illumina [1671387] (imputed)	N
648	chr1	8309593	8309594	rs150724452	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs150724452-T	0.02091	1E-8	(CTSB)	0.4379	NR unit increase	Illumina [1671387] (imputed)	N
648	chr1	8322641	8322642	rs114301916	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in normal cognition	305 European ancestry cognitively normal individuals	NA	1p36.23	RPL7AP18, SLC45A1, RERE	rs114301916-A	0.03	3E-7		1.14	[0.71-1.57] unit increase	Illumina [7770817] (imputed)	N
648	chr1	8336066	8336067	rs151164573	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p36.23	NR	rs151164573-A	NR	1E-6	(African)	0.3634	[0.22-0.51] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
648	chr1	8338354	8338355	rs438895	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1p36.23	intergenic	rs438895-G	NR	7E-6	(Education)	0.384	[0.22-0.55] unit increase	Illumina [628922]	N
648	chr1	8357220	8357221	rs11121152	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p36.23	SLC45A1	rs11121152-?	NR	8E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
648	chr1	8374252	8374253	rs72635790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.23		rs72635790-?	NR	1E-9				NR [~ 8900000] (imputed)	N
649	chr1	8390053	8390054	rs12142465	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p36.23	NR	rs12142465-C	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
649	chr1	8390887	8390888	rs2289731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.23	SLC45A1	rs2289731-A	0.309947	2E-9		0.014356522	[0.0097-0.019] unit increase	Affymetrix [93095623] (imputed)	N
649	chr1	8390887	8390888	rs2289731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.23	SLC45A1	rs2289731-A	0.309956	7E-9		0.013839823	[0.0092-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
649	chr1	8393870	8393871	rs35167234	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p36.23	NR	rs35167234-T	0.278575	3E-8		0.0413432	[0.027-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
649	chr1	8402593	8402594	rs72636904	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs72636904-C	0.02962	2E-8	(HNRNPH3)	0.0466	NR unit increase	Illumina [1671387] (imputed)	N
649	chr1	8412988	8412989	rs1064826	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.23	NR	rs1064826-A	0.2966	3E-9				NR [9056863] (imputed)	N
649	chr1	8412988	8412989	rs1064826	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p36.23	NR	rs1064826-?	NR	2E-6		0.0082815	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
649	chr1	8419765	8419766	rs11581418	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p36.23	SLC45A1, RERE	rs11581418-?	NR	5E-9	(female)	0.029124	[0.019-0.039] unit decrease	Affymetrix [25921788] (imputed)	N
649	chr1	8422675	8422676	rs2252865	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p36.23	RERE	rs2252865-T	0.3241	5E-8		0.0328	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
649	chr1	8422675	8422676	rs2252865	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	1p36.23	RERE	rs2252865-T	NR	6E-8	(EA)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
649	chr1	8422675	8422676	rs2252865	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	1p36.23	RERE	rs2252865-T	NR	1E-9		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
649	chr1	8422675	8422676	rs2252865	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1p36.23	SLC45A1, RERE, ENO1	rs2252865-T	NR	5E-7	(5 degree of freedom test)	1.03	[1.00-1.06]	NR [1252901] (imputed)	N
649	chr1	8422675	8422676	rs2252865	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p36.23	NR	rs2252865-?	NR	3E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
649	chr1	8424984	8424985	rs34269918	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1p36.23	RERE, SLC45A1	rs34269918-?	NR	3E-9		1.0626993	[1.04-1.08]	Illumina [8000000] (imputed)	N
649	chr1	8425899	8425900	rs3753275	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1p36.23	intergenic	rs3753275-T	0.824	4E-7		0.03	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr1	8431606	8431607	rs3795310	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.23		rs3795310-T	0.5	5E-13		7.22	z score increase	Affymetrix [9061022] (imputed)	N
649	chr1	8431606	8431607	rs3795310	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p36.23	RERE	rs3795310-T	NR	8E-6		0.882	[0.83-0.94]	NR [NR] (imputed)	N
649	chr1	8431606	8431607	rs3795310	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p36.23	RERE	rs3795310-T	NR	3E-8		0.88	[0.83-0.93]	Illumina [NR] (imputed)	N
649	chr1	8431606	8431607	rs3795310	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p36.23	NR	rs3795310-T	NR	3E-9		0.01376	[0.0092-0.0183] unit increase	Affymetrix [10847151] (imputed)	N
649	chr1	8431606	8431607	rs3795310	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1p36.23	RERE	rs3795310-T	0.459361	1E-9		6.11	z score increase	NR [10847151] (imputed)	N
649	chr1	8432652	8432653	rs902356	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.23	RERE	rs902356-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
649	chr1	8445359	8445360	rs3765971	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.23	RERE	rs3765971-C	0.3451	5E-40		0.0259872	[0.022-0.03] unit decrease	NR [13737936] (imputed)	N
649	chr1	8445359	8445360	rs3765971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.23		rs3765971-?	NR	3E-50				NR [~ 8900000] (imputed)	N
649	chr1	8445359	8445360	rs3765971	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.23		rs3765971-?	NR	2E-51		0.0309501	[0.027-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
649	chr1	8445945	8445946	rs11121177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.23		rs11121177-A	0.1785	1E-16		0.0151	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
649	chr1	8447721	8447722	rs2120461	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.23	RERE	rs2120461-T	0.67	3E-6		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
649	chr1	8460247	8460249	rs138050288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p36.23		rs138050288-T	NR	1E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
649	chr1	8460247	8460249	rs138050288	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	1p36.23	RERE, SLC45A1	rs138050288-?	NR	7E-12		1.04	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
649	chr1	8462078	8462079	rs55823627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p36.23	Intergenic	rs55823627-T	0.1866	3E-14	(MTAG)	0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
649	chr1	8464508	8464509	rs2708632	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.23		rs2708632-?	NR	2E-50		0.0307508	[0.026-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
649	chr1	8464508	8464509	rs2708632	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.23	RERE	rs2708632-T	0.340535	3E-6	(men)	0.0237808	[0.013-0.034] unit decrease	NR [17166351] (imputed)	N
649	chr1	8464508	8464509	rs2708632	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.23	RERE	rs2708632-T	0.33967	1E-18		0.0289126	[0.022-0.036] unit decrease	NR [17166351] (imputed)	N
649	chr1	8464508	8464509	rs2708632	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.23	RERE	rs2708632-T	0.338915	2E-14	(women)	0.0340294	[0.025-0.043] unit decrease	NR [17166351] (imputed)	N
649	chr1	8467352	8467353	rs301795	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	1p36.23	NR	rs301795-A	NR	8E-9		5.774	z score decrease	Affymetrix [10847151] (imputed)	N
649	chr1	8467533	8467534	rs301793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.23		rs301793-T	0.1781	8E-18	(conditional-joint)	0.0158	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
649	chr1	8467533	8467534	rs301793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p36.23	Intergenic	rs301793-T	0.1781	2E-18	(MTAG)	0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
649	chr1	8469336	8469337	rs301789	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	1p36.23		rs301789-?	NR	7E-9				NR [9705931] (imputed)	N
649	chr1	8469788	8469789	rs2661868	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	1p36.23	NR	rs2661868-T	0.253	2E-6		0.0189	[0.011-0.027] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
649	chr1	8473812	8473813	rs12754538	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p36.23	NR	rs12754538-T	0.241	3E-6		0.0142	[0.0083-0.0201] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
649	chr1	8476427	8476428	rs159960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1p36.23		rs159960-G	NR	2E-9		0.052	[0.035-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
649	chr1	8476427	8476428	rs159960	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	1p36.23	RERE	rs159960-?	NR	5E-8		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
649	chr1	8476427	8476428	rs159960	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1p36.23	RERE	rs159960-A	0.4389	4E-10				Affymetrix [15688218] (imputed)	N
649	chr1	8476427	8476428	rs159960	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	1p36.23	RERE	rs159960-A	0.440566	4E-10		0.05709178	[0.039-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
649	chr1	8476427	8476428	rs159960	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.23	RERE	rs159960-G	0.4883	3E-12		0.2382	[0.17-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
649	chr1	8476440	8476441	rs301804	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.23	RERE	rs301804-C	0.6867	4E-17		0.0171	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
649	chr1	8476440	8476441	rs301804	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.23	NR	rs301804-C	0.68382	7E-10		0.0131905	[0.009-0.0174] unit decrease	NR [NR]	N
649	chr1	8477865	8477866	rs115109046	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.23	NR	rs115109046-T	0.0319442	5E-10		0.0538931	[0.037-0.071] unit increase	NR [19129689] (imputed)	N
649	chr1	8481015	8481016	rs301805	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p36.23	RERE	rs301805-T		3E-9		0.979	[NR]	Affymetrix [up to 79000000] (imputed)	N
649	chr1	8481015	8481016	rs301805	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p36.23	RERE	rs301805-T	0.4227	4E-8		0.011173298	[0.0072-0.0152] unit decrease	Affymetrix [11514654] (imputed)	N
649	chr1	8481015	8481016	rs301805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p36.23		rs301805-?	NR	8E-9				NR [~ 8900000] (imputed)	N
649	chr1	8481015	8481016	rs301805	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1p36.23	RERE	rs301805-?	NR	6E-9		1.0416667		NR [74888535] (imputed)	N
649	chr1	8482077	8482078	rs301806	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	1p36.23	NR	rs301806-C	NR	4E-6		1.009	[1.005-1.013]	NR [8968716] (imputed)	N
649	chr1	8482077	8482078	rs301806	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.23	NR	rs301806-T	0.5842	1E-12		1.0439503	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
649	chr1	8482077	8482078	rs301806	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p36.23	NR	rs301806-C	0.4208	5E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
649	chr1	8482077	8482078	rs301806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p36.23	NR	rs301806-T	0.565850667271711	2E-12		0.006497706	[0.0047-0.0083] unit decrease	NR [NR]	N
649	chr1	8482077	8482078	rs301806	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.23		rs301806-?	NR	1E-16				NR [~ 8900000] (imputed)	N
649	chr1	8482077	8482078	rs301806	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	1p36.23	NR	rs301806-T	0.5925	1E-6		0.0087	[0.0052-0.0122] unit increase	NR [~ 27400000] (imputed)	N
649	chr1	8482077	8482078	rs301806	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1p36.23	NR	rs301806-C	0.4406	1E-9		0.0131	[0.009-0.0172] unit increase	Illumina [NR] (imputed)	N
649	chr1	8482077	8482078	rs301806	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1p36.23	RERE	rs301806-T	0.54	2E-20		1.048	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
649	chr1	8482077	8482078	rs301806	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1p36.23	RERE	rs301806-T	0.551911	2E-9		0.0271	[0.015-0.039] unit decrease	Illumina [1220000] (imputed)	N
649	chr1	8484227	8484228	rs159961	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p36.23		rs159961-T	0.34	4E-8				NR [NR] (imputed)	N
649	chr1	8484227	8484228	rs159961	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p36.23		rs159961-T	0.34	8E-11		0.01	% increase	NR [NR] (imputed)	N
649	chr1	8484227	8484228	rs159961	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	1p36.23		rs159961-?	NR	4E-10		0.023	NR unit increase	NR [4502103] (imputed)	N
649	chr1	8484822	8484823	rs301807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.23		rs301807-G	NR	1E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
649	chr1	8484822	8484823	rs301807	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	1p36.23	NR	rs301807-?		1E-10				NR [11140414]	N
649	chr1	8484822	8484823	rs301807	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p36.23	NR	rs301807-G	0.57	4E-14		0.00822505	[0.0061-0.0104] unit increase	NR [9732723] (imputed)	N
649	chr1	8484822	8484823	rs301807	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p36.23	NR	rs301807-G	0.57	3E-12		0.018014409	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
649	chr1	8484822	8484823	rs301807	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	1p36.23	NR	rs301807-A	NR	1E-10		6.407	z score increase	Affymetrix [10847151] (imputed)	N
649	chr1	8484822	8484823	rs301807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p36.23	RERE, RP5-1115A15.1	rs301807-G	0.5821	3E-11		0.02393468	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8484822	8484823	rs301807	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	1p36.23	RERE	rs301807-A	0.4473	4E-15		1.209	[1.15-1.27]	Illumina [8966411] (imputed)	N
649	chr1	8485903	8485904	rs12045438	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p36.23	NR	rs12045438-T	0.7538	2E-6		0.016637653	[0.0098-0.0235] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
649	chr1	8486130	8486131	rs302714	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1p36.23	RERE	rs302714-A		4E-6		0.0698	[0.04-0.1] unit increase	Illumina [NR]	N
649	chr1	8486130	8486131	rs302714	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p36.23	RERE	rs302714-A	0.66	9E-9		0.0052	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
649	chr1	8486130	8486131	rs302714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.23		rs302714-?	NR	6E-13				NR [~ 8900000] (imputed)	N
649	chr1	8487322	8487323	rs301797	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1p36.23	NR	rs301797-?	NR	2E-12				Illumina [up to 5582932] (imputed)	N
649	chr1	8487322	8487323	rs301797	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p36.23	NR	rs301797-A	NR	5E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
649	chr1	8488564	8488565	rs301798	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p36.23	LOC102724552, RERE, SLC45A1, SNORD128	rs301798-?		7E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
649	chr1	8489301	8489302	rs301799	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 6pm-8pm)	88,411 European ancestry individuals	NA	1p36.23		rs301799-C	0.422	2E-9		0.027	unit increase	Affymetrix [8951705] (imputed)	N
649	chr1	8489301	8489302	rs301799	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p36.23	NR	rs301799-?	NR	1E-6				NR [NR] (imputed)	N
649	chr1	8489301	8489302	rs301799	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p36.23	RERE, SLC45A1	rs301799-?		2E-8				NR [6786993] (imputed)	N
649	chr1	8489301	8489302	rs301799	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p36.23	NR	rs301799-C	0.4306	4E-31		1.025641	[1.02-1.03]	NR [8098588] (imputed)	N
649	chr1	8489301	8489302	rs301799	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	1p36.23	NR	rs301799-C		3E-6		1.11	[1.06-1.17]	Affymetrix, Illumina [up to 3437411] (imputed)	N
649	chr1	8490319	8490320	rs302719	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p36.23	ENSG00000232912	rs302719-?	NR	3E-10		0.013391206	[0.0092-0.0176] unit increase	NR [7306098]	N
649	chr1	8490602	8490603	rs301800	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p36.23	NR	rs301800-T	0.1786	3E-8		0.016109612	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
649	chr1	8490982	8490983	rs159962	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.23	NR	rs159962-?	NR	5E-6	(male)	0.1244	[0.071-0.178] unit increase	Affymetrix [7794483] (imputed)	N
649	chr1	8490982	8490983	rs159962	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.23	NR	rs159962-?	NR	1E-7		0.11801	[0.074-0.162] unit increase	Affymetrix [7794483] (imputed)	N
649	chr1	8495589	8495590	rs172531	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	1p36.23	RERE	rs172531-A	NR	5E-6		0.871709	[0.81-0.93]	Illumina [11610548] (imputed)	N
649	chr1	8495589	8495590	rs172531	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p36.23	RERE	rs172531-A	NR	6E-7		0.0379	unit decrease	Illumina [15409056] (imputed)	N
649	chr1	8495589	8495590	rs172531	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p36.23	NR	rs172531-?	NR	5E-12		1.0746564	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
649	chr1	8495589	8495590	rs172531	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p36.23	RERE	rs172531-G	NR	3E-8	(EA)	1.0663254	[1.04-1.09]	Illumina [6627481] (imputed)	N
649	chr1	8495589	8495590	rs172531	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p36.23	RERE	rs172531-G	NR	1E-9		1.0683761	[1.05-1.09]	Illumina [6627481] (imputed)	N
649	chr1	8495589	8495590	rs172531	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p36.23	RERE, SLC45A1	rs172531-G	NR	5E-11		1.0741138	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
649	chr1	8495944	8495945	rs301801	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	1p36.23	RERE	rs301801-C	0.33	5E-9		0.016	[0.010-0.022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
649	chr1	8495944	8495945	rs301801	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	1p36.23	RERE	rs301801-C	0.33	3E-8	(EA)	0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
649	chr1	8495944	8495945	rs301801	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	1p36.23	RERE	rs301801-C	NR	2E-8		0.008	[0.0060-0.0100] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
649	chr1	8497306	8497307	rs301802	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	1p36.23	NR	rs301802-?		3E-10				NR [520857]	N
649	chr1	8497306	8497307	rs301802	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p36.23	RERE	rs301802-T	0.417	7E-12		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
649	chr1	8498326	8498326	rs34976449	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p36.23	RERE	rs34976449-TG	0.5849	1E-11		0.02499501	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8498679	8498680	rs301803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p36.23		rs301803-?	NR	4E-11				NR [~ 8900000] (imputed)	N
649	chr1	8501785	8501786	rs301819	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.23	RERE	rs301819-G	0.59	2E-15				NR [> 9500000] (imputed)	N
649	chr1	8501785	8501786	rs301819	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1p36.23	RERE	rs301819-G	0.591567	1E-9		1.039187	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
649	chr1	8501785	8501786	rs301819	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	1p36.23	RERE	rs301819-?	NR	1E-11				Affymetrix [up to 7325140] (imputed)	N
649	chr1	8501785	8501786	rs301819	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	1p36.23	RERE	rs301819-G	0.591	3E-7		1.08	[1.05-1.12]	Affymetrix [33771858] (imputed)	N
649	chr1	8503241	8503242	rs301818	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	1p36.23		rs301818-?	NR	1E-9		0.02	NR unit increase	NR [4425810] (imputed)	N
649	chr1	8503378	8503379	rs301817	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p36.23	RERE	rs301817-A		6E-13		0.0062	[0.0044-0.008] unit increase	Affymetrix [13304133] (imputed)	N
649	chr1	8503378	8503379	rs301817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.23	RERE	rs301817-A	0.587858	5E-10		0.013960928	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr1	8503378	8503379	rs301817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.23	RERE	rs301817-A	0.587814	3E-17		0.018993083	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr1	8503378	8503379	rs301817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	1p36.23	NR	rs301817-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
649	chr1	8503378	8503379	rs301817	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	1p36.23	RERE	rs301817-?	NR	3E-9				Affymetrix [up to 13554551] (imputed)	N
649	chr1	8504420	8504421	rs159963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.23		rs159963-A	NR	2E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
649	chr1	8504420	8504421	rs159963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.23		rs159963-A	NR	7E-23		0.0169	[0.014-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
649	chr1	8504420	8504421	rs159963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.23	RERE	rs159963-A	0.58348	2E-29		0.0254016	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
649	chr1	8504420	8504421	rs159963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.23	RERE	rs159963-A	0.583477	6E-17		0.018836932	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
649	chr1	8504420	8504421	rs159963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1p36.23		rs159963-?	NR	1E-11				NR [~ 8900000] (imputed)	N
649	chr1	8504420	8504421	rs159963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.23		rs159963-?	NR	6E-28				NR [~ 8900000] (imputed)	N
649	chr1	8504420	8504421	rs159963	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1p36.23	RERE, SLC45A1	rs159963-C	0.44	3E-8		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
649	chr1	8504420	8504421	rs159963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p36.23	RERE	rs159963-A	0.5826	4E-16		0.02967547	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8504420	8504421	rs159963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p36.23	RERE	rs159963-A	0.5827	2E-19		0.03283252	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8504420	8504421	rs159963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p36.23	RERE	rs159963-A	0.5826	1E-16		0.03014684	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8504420	8504421	rs159963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p36.23	RERE	rs159963-A	0.5826	2E-12		0.02564022	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr1	8505057	8505058	rs301816	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p36.23		rs301816-?	NR	4E-20		0.025	unit decrease	NR [NR]	N
649	chr1	8505057	8505058	rs301816	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p36.23	RERE	rs301816-A	0.578784	5E-14		1.0470792	[1.03460746255146-1.05970138989138]	NR [9572556] (imputed)	N
649	chr1	8505057	8505058	rs301816	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	1p36.23	RERE	rs301816-A	0.583	5E-6		1.034	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
649	chr1	8505057	8505058	rs301816	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1p36.23	RERE	rs301816-A	NR	1E-12		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
649	chr1	8507772	8507773	rs11581328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.23		rs11581328-?	NR	2E-18				NR [~ 8900000] (imputed)	N
650	chr1	8520487	8520490	rs142472947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p36.23	RERE	rs142472947-A	0.1905	8E-10		0.02798421	[0.019-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
650	chr1	8524876	8524877	rs12080583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.23	NR	rs12080583-A	0.6552	1E-22				Affymetrix, Illumina [23472807] (imputed)	N
650	chr1	8526141	8526142	rs4908760	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1p36.23	RERE	rs4908760-A	0.35	2E-8		0.0078	[0.0019-0.0137] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
650	chr1	8526141	8526142	rs4908760	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	1p36.23	RERE	rs4908760-G	0.37	7E-15		1.36	[1.26-1.48]	Illumina [520460]	N
650	chr1	8537288	8537289	rs1884352	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p36.23	NR	rs1884352-A	0.607147548381289	1E-11		0.007971245	[0.0057-0.0103] unit decrease	NR [NR]	N
650	chr1	8537288	8537289	rs1884352	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p36.23	NR	rs1884352-A	0.607147548381289	1E-11		0.01034296	[0.0074-0.0133] unit decrease	NR [NR]	N
650	chr1	8537288	8537289	rs1884352	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p36.23	NR	rs1884352-A	0.607147548381289	8E-12		0.006651864	[0.0047-0.0086] unit decrease	NR [NR]	N
650	chr1	8560325	8560326	rs77833655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs77833655-T	0.01045	4E-9	(HIST1H1C)	0.03401	NR unit increase	Illumina [1671387] (imputed)	N
650	chr1	8560325	8560326	rs77833655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.23	NR	rs77833655-T	0.01045	3E-10	(TNC)	0.07721	NR unit increase	Illumina [1671387] (imputed)	N
650	chr1	8581252	8581253	rs71509050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.23		rs71509050-A	NR	3E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
650	chr1	8591161	8591162	rs12131864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.23	NR	rs12131864-G	0.630752	3E-23		0.019495	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
650	chr1	8596741	8596742	rs17032657	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	1p36.23	RERE	rs17032657-G	0.33	7E-7	(Tangent line angle of er3)	0.013	[NR] unit increase	Affymetrix [311944]	N
650	chr1	8596741	8596742	rs17032657	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	1p36.23	RERE	rs17032657-G	0.33	2E-6	(Right eyelid peak position ratio)	0.006	[NR] unit decrease	Affymetrix [311944]	N
650	chr1	8605666	8605667	rs6577497	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.23		rs6577497-T	0.35	8E-12		6.84	z score increase	Affymetrix [9061022] (imputed)	N
650	chr1	8605666	8605667	rs6577497	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p36.23	RERE	rs6577497-A	0.614272	2E-8		0.00807228	[0.0053-0.0109] unit increase	Affymetrix [12370749]	N
650	chr1	8647916	8647917	rs6670508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.23		rs6670508-?	NR	7E-8				NR [~ 8900000] (imputed)	N
650	chr1	8650184	8650185	rs7526171	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p36.23	NR	rs7526171-C	0.625437991226037	6E-9		0.008171212	[0.0054-0.0109] unit decrease	NR [NR]	N
651	chr1	8654763	8654764	rs4908768	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1p36.23	NR	rs4908768-G	0.8015	6E-9		0.0135	[0.009-0.018] unit increase	Illumina [NR] (imputed)	N
651	chr1	8654763	8654764	rs4908768	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	1p36.23	NR	rs4908768-G	0.8062	2E-8		0.0201	[0.013-0.027] unit decrease	Illumina [NR] (imputed)	N
651	chr1	8659281	8659282	rs2100888	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	1p36.23	ENO1	rs2100888-A	0.365649	8E-10		6.14	z score decrease	NR [10847151] (imputed)	N
651	chr1	8659713	8659714	rs4480384	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1p36.23	RERE	rs4480384-G	0.643256595134538	3E-10		0.043097023	[0.03-0.056] unit increase	Affymetrix [35186738] (imputed)	N
651	chr1	8663820	8663821	rs12136766	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.23	NR	rs12136766-G	0.3513	1E-11				NR [9056863] (imputed)	N
651	chr1	8690932	8690933	rs1381928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	1p36.23	NR	rs1381928-G	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
651	chr1	8693323	8693324	rs2401137	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.23	NR	rs2401137-?	NR	2E-7		0.0439	[0.027-0.06] unit increase	Illumina [at least 560000] (imputed)	N
651	chr1	8701287	8701288	rs4908769	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	1p36.23	RERE	rs4908769-?	NR	2E-12		1.061	[1.044-1.079]	Illumina [12845910] (imputed)	N
651	chr1	8708528	8708529	rs11121210	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.23	NA	rs11121210-T	0.3445	2E-10		0.0111	[0.0078-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
651	chr1	8724521	8724522	rs10864360	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1p36.23	NR	rs10864360-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
651	chr1	8730778	8730779	rs6695867	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	1p36.23	NR	rs6695867-A	NR	5E-9		5.855	z score decrease	Affymetrix [10847151] (imputed)	N
651	chr1	8759553	8759554	rs12025126	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	1p36.23	RERE	rs12025126-C	0.29	6E-8		0.01	[0.007-0.015] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
652	chr1	8800779	8800780	rs4908508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.23	RERE	rs4908508-C	0.205658	3E-12		0.020651514	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
652	chr1	8800779	8800780	rs4908508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.23		rs4908508-?	NR	2E-19				NR [~ 8900000] (imputed)	N
652	chr1	8804032	8804033	rs4908776	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.23	RERE	rs4908776-T	0.169035	6E-10		0.0154386	[0.011-0.02] unit increase	NR [13737936] (imputed)	N
652	chr1	8894345	8894346	rs12068123	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.23	RERE, ENO1	rs12068123-G	0.45	6E-9		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
652	chr1	8894345	8894346	rs12068123	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.23	RERE, ENO1	rs12068123-?	NR	6E-9		1.049	[1.032-1.066]	Illumina [13757430] (imputed)	N
652	chr1	8894356	8894357	rs11121240	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1p36.23	RERE, ENO1	rs11121240-T	NR	2E-9		1.042	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
652	chr1	8903930	8903931	rs12124851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.23		rs12124851-G	0.315535	8E-9		0.013811522	[0.0091-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
652	chr1	8906300	8906301	rs11121242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.23		rs11121242-G	0.513025	2E-11		0.014913648	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr1	8908211	8908212	rs2065603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.23		rs2065603-A	0.511642	5E-26		0.023401283	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
652	chr1	8910109	8910110	rs6577536	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p36.23		rs6577536-A	0.491	1E-8				Affymetrix [10369434] (imputed)	N
652	chr1	8910109	8910110	rs6577536	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1p36.23	NR	rs6577536-?	NR	4E-10				Affymetrix, Illumina [6211246] (imputed)	N
652	chr1	8910109	8910110	rs6577536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p36.23		rs6577536-G	0.509074	2E-12		0.015637323	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
652	chr1	8910541	8910542	rs6661010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p36.23		rs6661010-T	NR	2E-15		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
652	chr1	8910541	8910542	rs6661010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p36.23		rs6661010-T	NR	5E-19		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
653	chr1	8913655	8913656	rs12752838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p36.23	intergenic	rs12752838-G	0.5035	3E-11		0.02389095	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8913655	8913656	rs12752838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p36.23	intergenic	rs12752838-G	0.5035	2E-11		0.02400847	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8913655	8913656	rs12752838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p36.23	intergenic	rs12752838-G	0.5035	4E-11		0.02361786	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8913655	8913656	rs12752838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p36.23	intergenic	rs12752838-G	0.5034	1E-10		0.02328894	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8913655	8913656	rs12752838	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p36.23	intergenic	rs12752838-G	0.5035	1E-11		0.02429055	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8916516	8916517	rs2038903	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1p36.23	NR	rs2038903-T	0.4454	3E-10		0.1922	[0.13-0.25] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
653	chr1	8917101	8917102	rs11121246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.23	NR	rs11121246-G	0.568756	2E-36				Affymetrix, Illumina [24588908] (imputed)	N
653	chr1	8917101	8917102	rs11121246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.23	NR	rs11121246-G	0.502366	2E-36		0.023005	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
653	chr1	8917101	8917102	rs11121246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p36.23	NR	rs11121246-G	0.502219	5E-10		0.012743	[0.0087-0.0167] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
653	chr1	8917101	8917102	rs11121246	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.23	ENO1	rs11121246-G	0.5001	3E-16		0.02979656	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8917398	8917398	rs79565040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.23	ENO1	rs79565040-TTA	0.503985	5E-52		0.034113668	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
653	chr1	8917398	8917398	rs79565040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.23	ENO1	rs79565040-TTA	0.503949	8E-30		0.025427029	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
653	chr1	8917398	8917398	rs79565040	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1p36.23	ENO1	rs79565040-TTA	0.5023	1E-9		0.02121351	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr1	8918312	8918313	rs10864368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.23		rs10864368-C	NR	2E-22		0.0203	[0.016-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
653	chr1	8918312	8918313	rs10864368	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.23		rs10864368-T	0.497	8E-11				Affymetrix [10369434] (imputed)	N
653	chr1	8918312	8918313	rs10864368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.23	ENO1	rs10864368-C	0.503044	9E-11		0.015488556	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
653	chr1	8918312	8918313	rs10864368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.23	NR	rs10864368-C	0.570129	6E-31				Affymetrix, Illumina [24649327] (imputed)	N
653	chr1	8918312	8918313	rs10864368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.23	NR	rs10864368-C	0.502821	1E-31		0.021532	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
653	chr1	8918312	8918313	rs10864368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.23	NR	rs10864368-C	0.541006	2E-33				Affymetrix, Illumina [23114412] (imputed)	N
653	chr1	8918312	8918313	rs10864368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p36.23	NR	rs10864368-C	0.502691	4E-35		0.023683	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
653	chr1	8932931	8932932	rs115579221	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.23	ENO1	rs115579221-G	0.98171875	6E-6	(ENO1, 11105_171_3)	0.41854158	[0.24-0.6] unit increase	Illumina [> 1000000] (imputed)	N
653	chr1	8939841	8939842	rs1325920	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p36.23	ENO1-AS1	rs1325920-A	0.1539	3E-8		0.015135314	[0.0098-0.0205] unit decrease	Affymetrix [up to 18485882] (imputed)	N
653	chr1	8978513	8978514	rs6665631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.23	RP3-477M7.5, RP3-477M7.6	rs6665631-G	0.2758794	8E-15	(EA, Carbonic anhydrase 6)	0.3597	[0.27-0.45] unit increase	Affymetrix [509946]	N
653	chr1	9008098	9008099	rs72641551	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.23	NR	rs72641551-G	0.1	6E-49	(Carbonic anhydrase 6, CA6.3352.80.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
653	chr1	9009450	9009451	rs2274329	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA6	5,367 Icelandic ancestry individuals	NA	1p36.23		rs2274329-C	0.1155	3E-35		0.356522	[0.3-0.41] unit decrease	Illumina [7506463] (imputed)	N
653	chr1	9011626	9011627	rs3765967	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.23	CA6	rs3765967-A	0.09086345	6E-12	(Carbonic anhydrase 6)	0.4781	[0.34-0.61] unit decrease	Affymetrix [509946]	N
653	chr1	9017203	9017204	rs2274333	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA6	5,367 Icelandic ancestry individuals	NA	1p36.23		rs2274333-G	0.3378	4E-102		0.408247	[0.37-0.45] unit increase	Illumina [7506463] (imputed)	N
653	chr1	9025997	9025998	rs141515844	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p36.23	NR	rs141515844-?	NR	4E-9				Illumina [7760689] (imputed)	N
653	chr1	9030963	9030964	rs3737665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.23	NR	rs3737665-T	0.202	8E-90	(Carbonic anhydrase 6, CA6.3352.80.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
653	chr1	9031052	9031053	rs4908799	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p36.23	CA6	rs4908799-A	0.008	4E-6		0.293	NR unit decrease	Illumina [NR] (imputed)	N
653	chr1	9034420	9034421	rs3765964	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	1p36.23	NR	rs3765964-?	NR	3E-17	(Carbonic anhydrase 6)	0.44	[0.34-0.54] unit increase	Illumina [4020654] (imputed)	N
653	chr1	9034597	9034598	rs3765963	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA6	5,367 Icelandic ancestry individuals	NA	1p36.23		rs3765963-G	0.4267	4E-262		0.580305	[0.55-0.61] unit increase	Illumina [7506463] (imputed)	N
653	chr1	9034597	9034598	rs3765963	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA6	5,367 Icelandic ancestry individuals	NA	1p36.23		rs3765963-G	0.4267	3E-244		0.571303	[0.54-0.6] unit increase	Illumina [7506463] (imputed)	N
653	chr1	9034597	9034598	rs3765963	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.23	CA6	rs3765963-G	0.444375	9E-113	(CA6, 13747_9_3)	0.51430416	[0.47-0.56] unit increase	Illumina [> 1000000] (imputed)	N
653	chr1	9034597	9034598	rs3765963	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.23	CA6	rs3765963-G	0.444375	2E-106	(CA6, 3352_80_3)	0.5089899	[0.47-0.55] unit increase	Illumina [> 1000000] (imputed)	N
653	chr1	9034597	9034598	rs3765963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.23	CA6	rs3765963-G	0.402	4E-185	(Carbonic anhydrase 6, CA6.3352.80.3)	0.68	[0.64-0.72] unit increase	Affymetrix [10572788] (imputed)	N
653	chr1	9037272	9037273	rs6697763	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.23	CA6, RN7SL451P	rs6697763-T	0.3395186	3E-37	(Carbonic anhydrase 6)	0.5319	[0.45-0.61] unit increase	Affymetrix [509946]	N
654	chr1	9119317	9119318	rs142404867	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p36.23	NR	rs142404867-?	NR	1E-6		0.575984	[0.34-0.81] unit increase	NR [13958389] (imputed)	N
654	chr1	9151324	9151325	rs12080794	23726668	Hunter AM	2013-05-30	J Psychiatr Res	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 European, Hispanic, African American, Asian, mixed race and other ancestry sustained response individuals, 247 European, Hispanic, African American, Asian, mixed race and other ancestry unsustained response individuals	394 European ancestry sustained response individuals, 191 European ancestry unsustained response individuals	1p36.23	NR	rs12080794-?	NR	9E-6		1.75	[1.33-2.27]	Affymetrix [430198]	N
654	chr1	9153628	9153629	rs12061999	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1p36.23	NR	rs12061999-?		3E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
654	chr1	9154621	9154622	rs11121321	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	1p36.23	NR	rs11121321-T	NR	5E-6		0.82	[0.47-1.17] unit increase	NR [5896100] (imputed)	N
654	chr1	9163307	9163308	rs1974062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.22		rs1974062-?	NR	4E-10				NR [~ 8900000] (imputed)	N
654	chr1	9165684	9165685	rs72637739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.22		rs72637739-?	NR	1E-9				NR [~ 8900000] (imputed)	N
654	chr1	9170936	9170937	rs1998948	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	1p36.22		rs1998948-T	NR	1E-9				Illumina [11532091] (imputed)	N
655	chr1	9205331	9205332	rs12121864	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	1p36.22	intergenic	rs12121864-C	0.09	8E-6		0.28	[NR] unit increase	Illumina [223580]	N
655	chr1	9205331	9205332	rs12121864	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	1p36.22	NR	rs12121864-?	0.088	7E-7	(Phonetic/prosodic)	0.642	[0.39-0.89] unit increase	Illumina [223580]	N
655	chr1	9241838	9241839	rs79412885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p36.22		rs79412885-A	NR	5E-15		0.0347	[0.026-0.043] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
655	chr1	9241838	9241839	rs79412885	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1p36.22		rs79412885-?	NR	5E-8				Affymetrix [NR] (imputed)	N
655	chr1	9241838	9241839	rs79412885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p36.22	NR	rs79412885-A	NR	1E-13		0.035	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
655	chr1	9241838	9241839	rs79412885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.22	RP3-510D11.2	rs79412885-A	0.073492	1E-26		0.045981	[0.038-0.054] unit increase	Affymetrix [93095623] (imputed)	N
655	chr1	9241838	9241839	rs79412885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.22	RP3-510D11.2	rs79412885-A	0.07348	1E-18		0.03793735	[0.03-0.046] unit increase	Affymetrix [93095623] (imputed)	N
655	chr1	9241838	9241839	rs79412885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p36.22	RP3-510D11.2	rs79412885-A	0.077	8E-14		0.05139473	[0.038-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
655	chr1	9241838	9241839	rs79412885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p36.22	RP3-510D11.2	rs79412885-A	0.077	7E-13		0.04948829	[0.036-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
655	chr1	9244279	9244280	rs61787668	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	1p36.22		rs61787668-T	NR	5E-6		0.13208891	[0.076-0.188] decrease	Illumina [6334277] (imputed)	N
655	chr1	9252420	9252421	rs60401266	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	1p36.22	RP3-510D11.2, MIR34A	rs60401266-T	0.3535	9E-7		0.0603	[0.036-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
655	chr1	9259235	9259236	rs7551097	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.22	MIR34A, H6PD	rs7551097-?	NR	6E-8		0.018376417	[0.012-0.025] unit decrease	Illumina [27896057] (imputed)	N
655	chr1	9292281	9292282	rs9434723	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p36.22	H6PD	rs9434723-A	0.155	9E-13		0.029	[0.021-0.037] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
655	chr1	9295154	9295155	rs184437520	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	1p36.22		rs184437520-T	0.1528	4E-110		0.565222	[0.52-0.61] unit decrease	Illumina [7506463] (imputed)	N
655	chr1	9295443	9295444	rs9435144	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.22	H6PD	rs9435144-C	0.425	9E-96	(H6PD, 7161_25_3)	0.5110725	[0.46-0.56] unit decrease	Illumina [> 1000000] (imputed)	N
655	chr1	9299946	9299947	rs2268176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.22		rs2268176-?	NR	2E-8				NR [~ 8900000] (imputed)	N
655	chr1	9303925	9303926	rs556189727	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.22	NR	rs556189727-G	0.208	3E-38	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.44	[0.38-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
655	chr1	9304978	9304986	rs139855605	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		NR	rs139855605-C	0.145	1E-104	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.73	[0.67-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
655	chr1	9305444	9305445	rs34603401	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	1p36.22		rs34603401-C	0.1147	8E-162		0.762809	[0.71-0.82] unit increase	Illumina [7506463] (imputed)	N
655	chr1	9305444	9305445	rs34603401	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.22	H6PD	rs34603401-C	0.15	1E-126	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.76	[0.7-0.82] unit increase	Affymetrix [10572788] (imputed)	N
656	chr1	9306848	9306849	rs2310925	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	1p36.22		rs2310925-C	0.4237	1E-166		0.494281	[0.46-0.53] unit decrease	Illumina [7506463] (imputed)	N
656	chr1	9317603	9317604	rs6662509	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p36.22	H6PD	rs6662509-T	0.15	3E-10		1.23	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
656	chr1	9319555	9319556	rs3765959	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1p36.22	H6PD	rs3765959-A	0.151	4E-6		0.0575	[0.033-0.082] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
656	chr1	9325750	9325751	rs9434745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.22	H6PD	rs9434745-G	NR	1E-9		0.0276537	[0.019-0.037] unit increase	Affymetrix [323123] (imputed)	N
656	chr1	9334894	9334895	rs111748199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.22	H6PD	rs111748199-C	NR	2E-9		0.0208795	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
656	chr1	9334992	9334993	rs57533288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs57533288-A	NR	3E-11		0.0218212	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
656	chr1	9335744	9335745	rs6688233	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p36.22	NR	rs6688233-T	0.24	3E-24		0.022	[0.018-0.026] unit increase	Affymetrix [2446094] (imputed)	N
656	chr1	9335744	9335745	rs6688233	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p36.22	NR	rs6688233-T	0.24	5E-8				Affymetrix [2446094] (imputed)	N
656	chr1	9335744	9335745	rs6688233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p36.22	NR	rs6688233-T	0.2393	1E-23		0.021	[0.017-0.025] unit increase	NR [~ 27400000] (imputed)	N
656	chr1	9335744	9335745	rs6688233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p36.22	NA	rs6688233-T	0.2394	3E-19		0.0186	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
656	chr1	9335744	9335745	rs6688233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p36.22	NR	rs6688233-T	0.2394	3E-19		0.0186	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
656	chr1	9336115	9336116	rs72641832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs72641832-A	NR	1E-20		0.0304295	[0.024-0.037] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9336115	9336116	rs72641832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs72641832-A	NR	3E-19		0.0292932	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9336115	9336116	rs72641832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs72641832-A	NR	6E-17		0.0271855	[0.021-0.034] unit decrease	Affymetrix [321016] (imputed)	N
656	chr1	9336115	9336116	rs72641832	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.22	NR	rs72641832-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
656	chr1	9336585	9336586	rs7544514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs7544514-T	NR	1E-8		0.026672	[0.018-0.036] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9336585	9336586	rs7544514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs7544514-T	NR	4E-9		0.027437	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9336585	9336586	rs7544514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs7544514-T	NR	4E-10		0.0293251	[0.02-0.039] unit decrease	Affymetrix [321114] (imputed)	N
656	chr1	9336677	9336678	rs113563611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs113563611-G	NR	1E-8		0.0194415	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
656	chr1	9336747	9336748	rs72641835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.22		rs72641835-?	NR	1E-22				NR [~ 8900000] (imputed)	N
656	chr1	9337230	9337231	rs2871655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs2871655-G	NR	2E-8		0.0172207	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9338621	9338622	rs61783466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs61783466-T	NR	5E-9		0.0294013	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9338621	9338622	rs61783466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs61783466-T	NR	2E-9		0.030071	[0.02-0.04] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9338621	9338622	rs61783466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.22	NR	rs61783466-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
656	chr1	9338688	9338689	rs10746487	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1p36.22	NR	rs10746487-?	NR	2E-7		0.0608	[0.038-0.084] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
656	chr1	9338718	9338719	rs9435179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs9435179-G	NR	4E-8		0.0157443	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9338718	9338719	rs9435179	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.22	NR	rs9435179-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
656	chr1	9339204	9339205	rs11590326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs11590326-A	NR	3E-9		0.0188928	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
656	chr1	9340694	9340695	rs946602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs946602-T	NR	9E-10		0.0176244	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
656	chr1	9340736	9340737	rs916385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs916385-T	NR	8E-17		0.0263169	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9340736	9340737	rs916385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs916385-T	NR	6E-16		0.0255417	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9340736	9340737	rs916385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.22	Z98044.1	rs916385-C	0.722568	2E-16		0.020416554	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
656	chr1	9341127	9341128	rs916379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs916379-?	NR	8E-18				NR [~ 8900000] (imputed)	N
656	chr1	9341131	9341132	rs61783468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs61783468-T	NR	1E-11		0.027785	[0.02-0.036] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9341131	9341132	rs61783468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs61783468-T	NR	4E-12		0.0284834	[0.02-0.037] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9341134	9341135	rs946600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.22	Z98044.1	rs946600-C	NR	2E-11		0.0301752	[0.021-0.039] unit increase	Affymetrix [323123] (imputed)	N
656	chr1	9341785	9341786	rs677665	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p36.22	Z98044.1	rs677665-T	0.7232	1E-10		0.02596654	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
656	chr1	9343161	9343162	rs545087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs545087-A	NR	2E-13		0.0231648	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
656	chr1	9343620	9343621	rs658997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.22		rs658997-T	NR	4E-31		0.0259	[0.022-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
656	chr1	9343620	9343621	rs658997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.22		rs658997-?	NR	9E-51				NR [~ 8900000] (imputed)	N
656	chr1	9344205	9344205	rs766754528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.22	Z98044.1	rs766754528-T	NR	4E-8		0.0193444	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
656	chr1	9345785	9345786	rs12760882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.22		rs12760882-?	NR	9E-12				NR [~ 8900000] (imputed)	N
656	chr1	9347277	9347278	rs4465231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs4465231-A	NR	2E-14		0.0243287	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9347277	9347278	rs4465231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs4465231-A	NR	9E-14		0.0237069	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9347277	9347278	rs4465231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs4465231-A	NR	7E-9		0.0191515	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
656	chr1	9347277	9347278	rs4465231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs4465231-A	NR	9E-12		0.0216282	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
656	chr1	9347277	9347278	rs4465231	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.22	NR	rs4465231-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
656	chr1	9348566	9348566	rs147190211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs147190211-GA	NR	6E-11		0.0280622	[0.02-0.036] unit decrease	Affymetrix [321114] (imputed)	N
656	chr1	9348566	9348566	rs147190211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs147190211-GA	NR	3E-8		0.0239218	[0.016-0.032] unit decrease	Affymetrix [321169] (imputed)	N
656	chr1	9349149	9349150	rs2179072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.22	SPSB1	rs2179072-T	NR	3E-9		0.0204718	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
656	chr1	9349610	9349611	rs9442571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.22	SPSB1	rs9442571-A	NR	2E-10		0.0291148	[0.02-0.038] unit increase	Affymetrix [321114] (imputed)	N
656	chr1	9349610	9349611	rs9442571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs9442571-A	NR	3E-14		0.0319088	[0.024-0.04] unit increase	Affymetrix [321016] (imputed)	N
656	chr1	9349610	9349611	rs9442571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.22	SPSB1	rs9442571-A	0.1312	1E-6		0.0467	[0.028-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
656	chr1	9350778	9350779	rs77946689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs77946689-A	NR	9E-9		0.0310945	[0.02-0.042] unit increase	Affymetrix [319769] (imputed)	N
656	chr1	9352233	9352234	rs75573311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs75573311-A	NR	4E-9		0.039674	[0.026-0.053] unit increase	Affymetrix [321016] (imputed)	N
656	chr1	9352703	9352704	rs114709597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs114709597-G	NR	1E-12		0.0247018	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9352703	9352704	rs114709597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs114709597-G	NR	7E-13		0.0249616	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9352703	9352704	rs114709597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs114709597-G	NR	1E-8		0.0199436	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
656	chr1	9352703	9352704	rs114709597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.22	NR	rs114709597-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
656	chr1	9352783	9352783	rs564101206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs564101206-A	NR	1E-11		0.0238087	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9352783	9352783	rs564101206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs564101206-A	NR	7E-12		0.0240631	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
656	chr1	9352783	9352783	rs564101206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs564101206-A	NR	2E-10		0.0225044	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
656	chr1	9352783	9352783	rs564101206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs564101206-A	NR	4E-8		0.0194897	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
656	chr1	9353163	9353164	rs4908834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	SPSB1	rs4908834-T	0.286785	6E-17		0.022086205	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
656	chr1	9353183	9353184	rs187506632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.22	SPSB1	rs187506632-A	NR	9E-11		0.0230299	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
656	chr1	9354229	9354233	rs150359563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	SPSB1	rs150359563-G	0.208086	2E-22		0.028081408	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
656	chr1	9355471	9355472	rs2072735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p36.22	SPSB1	rs2072735-C	0.754	1E-10		0.02684968	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
656	chr1	9355471	9355472	rs2072735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p36.22	SPSB1	rs2072735-C	0.7539	1E-11		0.02817156	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
656	chr1	9355471	9355472	rs2072735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p36.22	SPSB1	rs2072735-C	0.7539	5E-11		0.02743184	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
656	chr1	9355471	9355472	rs2072735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p36.22	SPSB1	rs2072735-C	0.7539	1E-10		0.02668364	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
656	chr1	9355935	9355936	rs9442514	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.22	NR	rs9442514-G	0.739	1E-9		1.0429703	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
656	chr1	9356675	9356676	rs67551275	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1p36.22	SPSB1	rs67551275-?	NR	4E-18		1.069	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
656	chr1	9356675	9356676	rs67551275	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1p36.22	SPSB1	rs67551275-T	NR	6E-11		1.046	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
656	chr1	9357723	9357724	rs11121365	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	1p36.22	SPSB1	rs11121365-?		2E-6		5.76	[3.45-8.07] unit increase	Illumina [5908215] (imputed)	N
656	chr1	9359800	9359801	rs61783491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	SPSB1	rs61783491-T	NR	2E-8		0.0210992	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
656	chr1	9397322	9397323	rs80014315	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Cetobacterium A abundance in stool	5,959 Finnish ancestry individuals	NA	1p36.22		rs80014315-A	0.0114594	4E-8		0.171106	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
656	chr1	9408958	9408959	rs11121380	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	1p36.22	SPSB1	rs11121380-?	0.07	5E-8	(CSJC , EA, RF-)	11.11	[NR] unit increase	Illumina [534053]	N
656	chr1	9411468	9411469	rs11121382	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	1p36.22	SPSB1	rs11121382-C	NR	4E-6		0.099	[0.056-0.142] unit decrease	Affymetrix [736996]	N
656	chr1	9430872	9430873	rs9442598	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p36.22	NR	rs9442598-T	0.507066	2E-8		0.0387573	[0.025-0.052] unit decrease	Affymetrix [17914406] (imputed)	N
656	chr1	9432389	9432390	rs9308447	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1p36.22	SPSB1	rs9308447-?	NR	5E-7	(DMFS5mand)			Illumina [518997]	N
656	chr1	9434968	9434969	rs2871651	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	1p36.22		rs2871651-C	0.577123	2E-9		0.0450402	[0.031-0.059] decrease	Affymetrix [NR]	N
656	chr1	9434968	9434969	rs2871651	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	1p36.22		rs2871651-C	0.577874	1E-8		0.0445827	[0.03-0.059] decrease	Affymetrix [NR]	N
656	chr1	9434968	9434969	rs2871651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	1p36.22		rs2871651-T	NR	1E-10		0.0737	[0.051-0.096] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
657	chr1	9438539	9438540	rs17393468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.22		rs17393468-?	NR	2E-9				NR [~ 8900000] (imputed)	N
657	chr1	9438539	9438540	rs17393468	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	1p36.22	SPSB1, LOC100506022	rs17393468-?	NR	1E-6		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [8037763] (imputed)	N
657	chr1	9439982	9439983	rs60259384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.22		rs60259384-G	NR	6E-17		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
657	chr1	9441476	9441477	rs1890683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.22		rs1890683-?	NR	2E-12				NR [~ 8900000] (imputed)	N
657	chr1	9441585	9441586	rs2153304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.22		rs2153304-?	NR	1E-12				NR [~ 8900000] (imputed)	N
657	chr1	9441837	9441838	rs1815614	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	SPSB1	rs1815614-A	0.5401	2E-12		0.2405	[0.17-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
657	chr1	9441948	9441949	rs9662255	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	SPSB1	rs9662255-A	0.4075	5E-21		0.241	[0.19-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
657	chr1	9441948	9441949	rs9662255	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p36.22	chr1mb9	rs9662255-A	0.43	2E-10		0.207	[0.15-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
657	chr1	9441948	9441949	rs9662255	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	SPSB1, SLC25A33	rs9662255-C		2E-6		0.2	unit increase	Affymetrix [at least 2696785] (imputed)	N
657	chr1	9441948	9441949	rs9662255	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	SPSB1, SLC25A33	rs9662255-C		4E-10		0.177	unit increase	Affymetrix [at least 2696785] (imputed)	N
657	chr1	9445244	9445245	rs12044737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.22	NR	rs12044737-G	NR	4E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
657	chr1	9451016	9451017	rs72645537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.22		rs72645537-G	NR	3E-14		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
657	chr1	9472980	9472981	rs118100927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p36.22		rs118100927-C	0.10247	5E-11		0.023409	[0.016-0.03] unit increase	Illumina [13479295] (imputed)	N
657	chr1	9472980	9472981	rs118100927	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.22	SPSB1, LOC100506022	rs118100927-?	NR	9E-12		0.03445598	[0.025-0.044] unit increase	Illumina [27896057] (imputed)	N
657	chr1	9493289	9493290	rs12074324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.22		rs12074324-?	NR	2E-15				NR [~ 8900000] (imputed)	N
657	chr1	9516464	9516465	rs4078208	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.22	SPSB1	rs4078208-?	NR	8E-6	(PC 34:3)	0.239764	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
657	chr1	9529831	9529832	rs7541338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	RP13-392I16.1	rs7541338-G	NR	1E-10		0.018267	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
657	chr1	9538653	9538654	rs12561781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.22		rs12561781-?	NR	6E-20				NR [~ 8900000] (imputed)	N
657	chr1	9556557	9556558	rs11121431	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	1p36.22	RP13NR392I16.1	rs11121431-G	0.033	8E-6		1.92	[1.48-2.42]	Illumina [64973696] (imputed)	N
658	chr1	9673842	9673843	rs11121451	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	1p36.22	NR	rs11121451-?		3E-7	(PCB170)	1.55	[0.96-2.14] unit decrease	Illumina [8736858] (imputed)	N
658	chr1	9673842	9673843	rs11121451	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	1p36.22	NR	rs11121451-?		1E-7	(PCB180)	1.66	[1.05-2.27] unit decrease	Illumina [8736858] (imputed)	N
658	chr1	9674171	9674172	rs11121452	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	1p36.22	NR	rs11121452-?		7E-8	(PCB206)	1.74	[1.11-2.37] unit decrease	Illumina [8736858] (imputed)	N
659	chr1	9707427	9707428	rs7520103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.22		rs7520103-G	NR	2E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
659	chr1	9707427	9707428	rs7520103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.22	PIK3CD	rs7520103-G	0.325091	4E-9		0.013994602	[0.0093-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr1	9711343	9711344	rs7518602	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p36.22		rs7518602-T	0.611	4E-13				Affymetrix [10369434] (imputed)	N
659	chr1	9711343	9711344	rs7518602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs7518602-C	0.481322	8E-27				Affymetrix, Illumina [19872809] (imputed)	N
659	chr1	9711343	9711344	rs7518602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.22	NR	rs7518602-C	0.391285	2E-27		0.022113	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
659	chr1	9711641	9711642	rs7516138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.22		rs7516138-G	NR	7E-20		0.016	[0.013-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
659	chr1	9711641	9711642	rs7516138	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs7516138-G	0.470422	1E-28				Affymetrix, Illumina [23467995] (imputed)	N
659	chr1	9711641	9711642	rs7516138	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p36.22	NR	rs7516138-G	0.391091	1E-31		0.022592	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
659	chr1	9711641	9711642	rs7516138	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p36.22	PIK3CD	rs7516138-G	0.3844	2E-9		0.02217606	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
659	chr1	9711673	9711674	rs7516214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs7516214-?	NR	3E-30				NR [~ 8900000] (imputed)	N
659	chr1	9711759	9711760	rs11806839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	PIK3CD	rs11806839-C	0.384037	2E-19		0.020676868	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr1	9711759	9711760	rs11806839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.22	PIK3CD	rs11806839-C	0.384008	3E-27		0.024747888	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr1	9713385	9713386	rs4240895	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	1p36.22	C1orf200, PIK3CD	rs4240895-T	0.39	6E-13		1.14	[1.09-1.19]	Illumina [at least 371504] (imputed)	N
659	chr1	9713499	9713500	rs4240896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.22		rs4240896-?	NR	2E-11				NR [~ 8900000] (imputed)	N
659	chr1	9718086	9718087	rs6540991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p36.22		rs6540991-C	NR	1E-20		0.0219	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
659	chr1	9718086	9718087	rs6540991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.22	PIK3CD	rs6540991-C	0.310502	2E-19		0.021790942	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr1	9718202	9718203	rs7521255	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fervidobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1p36.22		rs7521255-G	0.100863	4E-8		0.0461438	[0.03-0.063] unit increase	Illumina [7980478] (imputed)	N
659	chr1	9721244	9721245	rs12083390	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	26,063 European ancestry men	NA	1p36.22	PIK3CD	rs12083390-G	NR	1E-6		1.12859	[0.68-1.58] unit increase	NR [9955952] (imputed)	N
659	chr1	9743825	9743826	rs79583983	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.22		rs79583983-T	0.05	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
659	chr1	9747742	9747743	rs74338407	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.22		rs74338407-T	0.05	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
659	chr1	9776918	9776919	rs140532807	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	1p36.22	PIK3CD	rs140532807-A	0.011	3E-6		0.289	[0.17-0.41] unit increase	Affymetrix [7287191] (imputed)	N
659	chr1	9789149	9789150	rs14271	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p36.22	PIK3CD, C1orf200, FLJ16126	rs14271-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
660	chr1	9879348	9879349	rs114190122	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p36.22	intergenic	rs114190122-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
660	chr1	9926019	9926020	rs7537879	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.22	NR	rs7537879-?	NR	6E-10				Affymetrix [NR]	N
660	chr1	9927807	9927808	rs191576341	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	1p36.22	CTNNBIP1	rs191576341-T	0.0187	6E-6		2.852	[1.809-4.498]	Affymetrix, Illumina [14074516] (imputed)	N
660	chr1	9937040	9937041	rs12128766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.22	CTNNBIP1	rs12128766-T	0.482284	3E-21		0.021111777	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
661	chr1	10000475	10000476	rs182770070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.22		rs182770070-?	NR	4E-8				NR [~ 8900000] (imputed)	N
661	chr1	10000475	10000476	rs182770070	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1p36.22	NMNAT1, LZIC, UBE4B	rs182770070-T	0.01	1E-7		0.9396	[0.59-1.29] unit increase	Affymetrix [19941912] (imputed)	N
662	chr1	10125406	10125407	rs7539725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.22	NR	rs7539725-G	0.13744900000000004	8E-10		0.00651944	[0.0041-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
662	chr1	10125406	10125407	rs7539725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.22	NR	rs7539725-G	0.13744900000000004	8E-9		0.00711307	[0.0045-0.0098] unit increase	Affymetrix [16582965] (imputed)	N
662	chr1	10139406	10139407	rs149622283	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Pararhizobium abundance in stool	5,959 Finnish ancestry individuals	NA	1p36.22		rs149622283-A	0.0125966	3E-8		0.0883107	[0.057-0.119] unit decrease	Illumina [7980478] (imputed)	N
662	chr1	10146178	10146179	rs4333851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p36.22	NR	rs4333851-A	0.15437900000000004	1E-8		0.00843092	[0.0053-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
662	chr1	10146178	10146179	rs4333851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p36.22	NR	rs4333851-A	0.15437900000000004	3E-7		0.00833053	[0.005-0.0117] unit increase	Affymetrix [16582614] (imputed)	N
662	chr1	10154459	10154460	rs113304383	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	1p36.22	UBE4B	rs113304383-T	0.019	2E-6		0.28	[0.4-0.17] unit decrease	Affymetrix [7435577] (imputed)	N
662	chr1	10167424	10167425	rs187585530	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p36.22	UBE4B	rs187585530-A	0.0053	1E-10	(EA)	1.55	[1.36-1.77]	Affymetrix, Illumina [up to 12149979] (imputed)	N
662	chr1	10167424	10167425	rs187585530	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p36.22	UBE4B	rs187585530-A	0.0053	1E-10		1.55	[1.36-1.77]	Affymetrix, Illumina [up to 12149979] (imputed)	N
662	chr1	10183111	10183112	rs115486679	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UBE4B	rs115486679-?	NR	4E-11	(male)	3.50999	[NR] unit decrease	Affymetrix [NR] (imputed)	N
662	chr1	10183111	10183112	rs115486679	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UBE4B	rs115486679-?	NR	1E-8		1.51056	[NR] unit decrease	Affymetrix [NR] (imputed)	N
662	chr1	10204185	10204186	rs12144133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.22		rs12144133-?	NR	6E-9				NR [~ 8900000] (imputed)	N
662	chr1	10209556	10209557	rs6696978	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.22		rs6696978-G	0.27	9E-10		6.12	z score increase	Affymetrix [9061022] (imputed)	N
663	chr1	10231462	10231463	rs12092513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	UBE4B	rs12092513-T	NR	4E-9		0.0306843	[0.02-0.041] unit increase	Affymetrix [321016] (imputed)	N
663	chr1	10234528	10234529	rs11121525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	UBE4B	rs11121525-T	NR	5E-12		0.030823	[0.022-0.04] unit increase	Affymetrix [321016] (imputed)	N
663	chr1	10234587	10234588	rs11806008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.22	UBE4B	rs11806008-A	NR	3E-8		0.0271408	[0.018-0.037] unit increase	Affymetrix [323123] (imputed)	N
663	chr1	10242291	10242292	rs77954449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.22	NR	rs77954449-G	0.028289	1E-10		0.036769	[0.026-0.048] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
663	chr1	10251367	10251368	rs11801734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	UBE4B	rs11801734-T	NR	7E-9		0.033183	[0.022-0.044] unit increase	Affymetrix [321016] (imputed)	N
663	chr1	10260591	10260592	rs3903151	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.22	intergenic	rs3903151-A	0.5794	1E-16		0.0157	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
663	chr1	10271687	10271688	rs11121529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.22		rs11121529-G	NR	8E-28		0.0381	[0.031-0.045] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
663	chr1	10271687	10271688	rs11121529	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Mean platelet volume	7,440 African American individuals, 5,466 Hispanic or Latin American individuals, 10,120 European ancestry individuals, 447 East Asian ancestry individuals, 12 individuals	7,857 African ancestry individuals	1p36.22		rs11121529-G	0.222589	1E-10		0.07604259	[0.053-0.099] unit increase	NR [NR]	N
663	chr1	10271687	10271688	rs11121529	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	1p36.22		rs11121529-C	0.1314	1E-6		0.112	[0.067-0.157] unit increase	Affymetrix, Illumina [NR] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.22	KIF1B	rs11121529-G	0.113668	3E-22		0.034198597	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.22	KIF1B	rs11121529-G	0.114445	8E-15		0.027097745	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.22	KIF1B	rs11121529-G	0.11369	1E-116		0.08032603	[0.073-0.087] unit increase	Affymetrix [93095623] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs11121529-G	0.10402	4E-40				Affymetrix, Illumina [24588908] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.22	NR	rs11121529-G	0.1152	2E-41		0.0389	[0.033-0.045] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs11121529-C	0.877136	1E-174				Affymetrix, Illumina [17210439] (imputed)	N
663	chr1	10271687	10271688	rs11121529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.22	NR	rs11121529-C	0.885589	1E-167		0.08247	[0.077-0.088] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
663	chr1	10271687	10271688	rs11121529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.22	KIF1B	rs11121529-G	0.1146	1E-44		0.07830624	[0.067-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr1	10273178	10273179	rs997482	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.22	NR	rs997482-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
663	chr1	10286175	10286176	rs17396340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	KIF1B	rs17396340-A	NR	3E-11		0.0279991	[0.02-0.036] unit increase	Affymetrix [321016] (imputed)	N
663	chr1	10286175	10286176	rs17396340	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p36.22	KIF1B	rs17396340-A	0.132	3E-14		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
663	chr1	10286175	10286176	rs17396340	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.22	KIF1B	rs17396340-A	NR	2E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
663	chr1	10286175	10286176	rs17396340	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.22	KIF1B	rs17396340-A	0.132	1E-11		0.027	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
663	chr1	10286175	10286176	rs17396340	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	1p36.22	KIF1B	rs17396340-A	NR	3E-8		0.008	[0.0041-0.0119] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
663	chr1	10290639	10290640	rs7524908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.22		rs7524908-?	NR	5E-27				NR [~ 8900000] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	7E-16		0.02575	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	2E-9	(females)	0.02471	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	1E-7	(males)	0.02672	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	6E-7	(females)	0.01935	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	5E-12		0.02134	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.22	KIF1B	rs4846204-T	0.126089	2E-6	(males)	0.02362	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
663	chr1	10308957	10308958	rs4846204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.22		rs4846204-?	NR	3E-10				NR [~ 8900000] (imputed)	N
663	chr1	10311876	10311877	rs17034615	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1p36.22	NR	rs17034615-?	NR	4E-10	(6-phosphogluconate dehydrogenase, decarboxylating)			Illumina [514227]	N
663	chr1	10312444	10312444	rs151178549	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.22		rs151178549-?	NR	4E-9		0.0140716	[0.0096-0.0186] unit increase	Affymetrix [20259828] (imputed)	N
663	chr1	10315296	10315297	rs12137527	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.22	NR	rs12137527-?	NR	2E-7		0.0617	[0.038-0.085] unit decrease	Illumina [at least 560000] (imputed)	N
663	chr1	10338203	10338204	rs41274456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.22		rs41274456-T	NR	1E-13		0.0381	[0.028-0.048] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
663	chr1	10343296	10343297	rs111368727	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.22		rs111368727-?	NR	1E-9		0.0182041	[0.013-0.024] unit increase	Affymetrix [20259828] (imputed)	N
663	chr1	10353111	10353112	rs10492972	18997785	Aulchenko YS	2008-11-09	Nat Genet	Genetic variation in the KIF1B locus influences susceptibility to multiple sclerosis.	Multiple sclerosis	45 European ancestry cases,195 European ancestry controls	1,316 European ancestry cases, 1,423 European ancestry controls, 1,318 cases and 1,507 controls from 756 families	1p36.22	KIF1B	rs10492972-C	0.27	3E-10		1.34	[1.23-1.48]	Affymetrix [~ 250000]	N
664	chr1	10357805	10357806	rs112682076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.22	KIF1B	rs112682076-C	0.010651	7E-16		0.08891865	[0.067-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.22	KIF1B	rs112682076-C	0.010661	2E-10		0.07035898	[0.049-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs112682076-C	0.00992203	1E-21				Affymetrix, Illumina [24649327] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.22	NR	rs112682076-C	0.010245	1E-23		0.09467	[0.076-0.113] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs112682076-G	0.989933	3E-14				Affymetrix, Illumina [23114412] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p36.22	NR	rs112682076-G	0.989593	1E-15		0.078159	[0.059-0.097] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs112682076-C	0.00993081	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.22	NR	rs112682076-C	0.010255	2E-13		0.069581	[0.051-0.088] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
664	chr1	10357805	10357806	rs112682076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs112682076-C	0.00992977	4E-13				Affymetrix, Illumina [24558453] (imputed)	N
664	chr1	10357805	10357806	rs112682076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.22		rs112682076-?	NR	5E-17				NR [~ 8900000] (imputed)	N
664	chr1	10357805	10357806	rs112682076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.22		rs112682076-?	NR	5E-10				NR [~ 8900000] (imputed)	N
664	chr1	10357805	10357806	rs112682076	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1p36.22	KIF1B	rs112682076-C	0.0114	7E-9		0.09869539	[0.065-0.132] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr1	10359125	10359125	rs139499211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.22	RNU6-37P	rs139499211-AT	0.12397	8E-14		0.025494479	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
664	chr1	10378415	10378416	rs6693965	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	1p36.22		rs6693965-T	0.8624	3E-8		0.1246	[0.081-0.169] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
664	chr1	10385470	10385471	rs17401966	29246937	Li Y	2018-02-15	Clin Cancer Res	Genome-Wide Association Study Identifies a New Locus at 7q21.13 Associated with Hepatitis B Virus-Related Hepatocellular Carcinoma.	Hepatitis B virus-related hepatocellular carcinoma	348 Chinese ancestry carrier cases, 359 Chinese ancestry carrier controls, 189 Chinese ancestry trios	3,796 Chinese ancestry carrier cases, 2,544 Chinese ancestry carrier controls	1p36.22	KIF1B	rs17401966-G	0.269	6E-6		1.89	[1.43-2.44]	Affymetrix, Illumina [up to 6089459] (imputed)	N
664	chr1	10385470	10385471	rs17401966	20676096	Zhang H	2010-08-01	Nat Genet	Genome-wide association study identifies 1p36.22 as a new susceptibility locus for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	348 Chinese ancestry cases, 359 Chinese ancestry controls	2,121 Chinese ancestry cases, 1,748 Chinese ancestry controls	1p36.22	UBE4B, KIF1B, PGD	rs17401966-A	0.72	2E-18		1.64	[1.49-1.82]	Affymetrix [294566]	N
664	chr1	10390039	10390040	rs551033057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1p36.22		rs551033057-G	NR	2E-11		0.6676	[0.47-0.86] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
664	chr1	10393919	10393920	rs11121542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.22	KIF1B	rs11121542-A	0.122218	1E-14		0.02605106	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
664	chr1	10393919	10393920	rs11121542	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1p36.22	KIF1B	rs11121542-A	0.122	3E-10		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
664	chr1	10398959	10398960	rs17402390	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.22	PGD	rs17402390-?	NR	6E-6	(anthranilic acid)	0.8544818	[0.49-1.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
664	chr1	10399007	10399008	rs17034775	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	1p36.22	KIF1B	rs17034775-?	NR	7E-6				Illumina [1539908]	N
664	chr1	10423987	10423988	rs12403443	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.22	NR	rs12403443-G	0.3208	9E-10				NR [9056863] (imputed)	N
664	chr1	10430302	10430303	rs187373836	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	1p36.22		rs187373836-A	NR	5E-7		1.3374349	NR	Affymetrix [7846216] (imputed)	N
664	chr1	10431131	10431132	rs12141192	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p36.22	NR	rs12141192-?	NR	1E-6		0.0589	[0.035-0.082] unit increase	Illumina [at least 560000] (imputed)	N
664	chr1	10432720	10432721	rs188880781	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.22		rs188880781-T	0.31	5E-9		5.84	z score increase	Affymetrix [9061022] (imputed)	N
664	chr1	10435815	10435816	rs61778406	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.22	KIF1B	rs61778406-?		2E-6				Illumina [4322238] (imputed)	N
664	chr1	10451798	10451799	rs4846217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p36.22	RN7SL721P	rs4846217-T	0.1252	5E-11		0.03614188	[0.025-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr1	10455147	10455148	rs11121559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p36.22		rs11121559-G	0.918	2E-12				Affymetrix [10369434] (imputed)	N
664	chr1	10455147	10455148	rs11121559	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.22		rs11121559-G	0.918	2E-12				Affymetrix [10369434] (imputed)	N
664	chr1	10483166	10483167	rs12119893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.22		rs12119893-A	NR	2E-11		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
664	chr1	10483166	10483167	rs12119893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.22		rs12119893-A	NR	7E-15		0.0232	[0.017-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
664	chr1	10483166	10483167	rs12119893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.22	PGD	rs12119893-A	0.135855	3E-11		0.022455215	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
664	chr1	10483166	10483167	rs12119893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.22	NR	rs12119893-A	0.140806	2E-15		0.022376	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
665	chr1	10521157	10521158	rs142383097	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	1p36.22	DFFA	rs142383097-A	0.97	6E-7	(AA)			Illumina [NR] (imputed)	N
665	chr1	10537089	10537090	rs684016	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.22	NR	rs684016-C	0.486648	2E-10		0.0127397	[0.0088-0.0167] unit decrease	NR [NR]	N
665	chr1	10556096	10556097	rs636291	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1p36.22	NR	rs636291-A	0.68	6E-7		1.04	[1.03-1.06]	Illumina [20370935] (imputed)	N
665	chr1	10556096	10556097	rs636291	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	1p36.22	PEX14	rs636291-A	0.16	2E-8	(EA, early-onset)	1.18	[1.12-1.24]	Affymetrix, Illumina [up to 16852405] (imputed)	N
665	chr1	10556446	10556447	rs648324	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.22	PEX14	rs648324-T	0.6982	9E-9		0.0148	[0.0097-0.0199] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
665	chr1	10556446	10556447	rs648324	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.22	PEX14	rs648324-T	0.6982	3E-9		0.0153	[0.01-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
665	chr1	10557250	10557251	rs662064	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	1p36.22	PEX14	rs662064-?	NR	3E-8		1.0615711	[1.04-1.08]	Illumina [13747813] (imputed)	N
665	chr1	10563608	10563609	rs10864459	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1p36.22	PEX14	rs10864459-?	0.6799999999999999	2E-9		1.1111112	[1.08-1.15]	Illumina [10909381] (imputed)	N
665	chr1	10563608	10563609	rs10864459	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	1p36.22	PEX14	rs10864459-?	0.69	5E-10		1.0526316	[1.01-1.1] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
665	chr1	10564674	10564675	rs2847344	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1p36.22	NR	rs2847344-A	NR	1E-8		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
665	chr1	10566214	10566215	rs616488	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p36.22		rs616488-A	NR	2E-23		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
665	chr1	10566214	10566215	rs616488	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.22	PEX14	rs616488-A	0.67	5E-20	(EA)	1.0638298	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
665	chr1	10566214	10566215	rs616488	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1p36.22	NR	rs616488-A	0.669999999999999	4E-18		1.1235955	[1.09-1.16] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
665	chr1	10566214	10566215	rs616488	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1p36.22	NR	rs616488-A	0.67	9E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
665	chr1	10566214	10566215	rs616488	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1p36.22	NR	rs616488-A	0.67	4E-11		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
665	chr1	10566214	10566215	rs616488	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1p36.22	PEX14	rs616488-A	0.665	1E-8		1.1	[1.06-1.14]	Illumina [NR]	N
665	chr1	10566214	10566215	rs616488	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p36.22	PEX14	rs616488-A	0.67	2E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
665	chr1	10566271	10566272	rs616402	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1p36.22	PEX14	rs616402-?	NR	2E-7		0.067	[0.093-0.042] unit decrease	Illumina [12039487] (imputed)	N
665	chr1	10572082	10572083	rs142020459	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	APITD1-CORT, CORT, DFFA, PEX14	rs142020459-G	NR	4E-9		0.108292	NR unit increase	NR [NR] (imputed)	N
665	chr1	10581657	10581658	rs2056417	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	1p36.22	PEX14	rs2056417-A	0.3027	4E-7		0.0658	[0.041-0.091] unit decrease	Illumina [2400000] (imputed)	N
665	chr1	10595981	10595982	rs12408852	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PEX14	rs12408852-?	NR	3E-9	(male)	3.00303	[NR] unit increase	Affymetrix [NR] (imputed)	N
665	chr1	10596021	10596022	rs2506889	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.22	NR	rs2506889-T	0.3185	2E-20	(EA)	0.0615	[0.048-0.075] unit decrease	Illumina [~ 11800000] (imputed)	N
665	chr1	10596340	10596341	rs12375	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	1p36.22		rs12375-?	NR	1E-5		0.934209	[0.9-0.96]	NR [682398]	N
665	chr1	10608595	10608596	rs4846230	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.22		rs4846230-?	NR	7E-14		0.0194683	[0.014-0.025] unit increase	Affymetrix [20259828] (imputed)	N
665	chr1	10612157	10612158	rs10864462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs10864462-?	NR	4E-9				NR [~ 8900000] (imputed)	N
666	chr1	10618993	10618994	rs11121589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.22		rs11121589-?	NR	2E-14				NR [~ 8900000] (imputed)	N
666	chr1	10620269	10620270	rs10746495	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.22	PEX14	rs10746495-A	0.1758	9E-13		0.017219	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
666	chr1	10633244	10633245	rs6687430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1p36.22		rs6687430-A	NR	2E-9		0.0431	[0.029-0.057] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
666	chr1	10633244	10633245	rs6687430	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1p36.22	PEX14	rs6687430-A	0.541066592886769	3E-8		0.036332093	[0.024-0.049] unit increase	Affymetrix [35186738] (imputed)	N
666	chr1	10633244	10633245	rs6687430	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.22	PEX14	rs6687430-A	0.54	8E-13				NR [> 9500000] (imputed)	N
666	chr1	10633244	10633245	rs6687430	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p36.22	PEX14	rs6687430-A	0.541675	7E-11		1.0400028	[1.02780584230096-1.0523444593877]	NR [9572556] (imputed)	N
666	chr1	10633244	10633245	rs6687430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1p36.22		rs6687430-?	NR	3E-9				NR [~ 8900000] (imputed)	N
666	chr1	10633244	10633245	rs6687430	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.22	PEX14	rs6687430-G	0.4588	1E-8		1.045	NR	Affymetrix [9154080] (imputed)	N
666	chr1	10633244	10633245	rs6687430	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	1p36.22	PEX14	rs6687430-G	0.459	6E-11		0.1423	[0.1-0.185] kg increase	Affymetrix [at least 17000000] (imputed)	N
666	chr1	10638603	10638604	rs12741973	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1p36.22	PEX14	rs12741973-C	NR	7E-6		0.167	[0.087-0.247] unit decrease	Illumina [~ 2740000] (imputed)	N
666	chr1	10643828	10643829	rs12045923	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1p36.22	CASZ1	rs12045923-T	0.6497	5E-7	(conditional)	0.028762	NR unit increase	NR [NR]	N
666	chr1	10649222	10649223	rs12090714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.22		rs12090714-?	NR	8E-12				NR [~ 8900000] (imputed)	N
666	chr1	10652976	10652977	rs284273	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.22	NR	rs284273-T	0.0543822	3E-19		0.0606204	[0.047-0.074] unit decrease	NR [19129689] (imputed)	N
666	chr1	10653621	10653622	rs17035390	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	PEX14	rs17035390-C	NR	3E-9		0.092108	NR unit increase	NR [NR] (imputed)	N
666	chr1	10666734	10666735	rs11121599	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.22	PEX14	rs11121599-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
666	chr1	10684097	10684098	rs2242288	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	CASZ1, PEX14	rs2242288-A	NR	3E-10		0.102028	NR unit increase	NR [NR] (imputed)	N
666	chr1	10690947	10690948	rs17035482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.22	NR	rs17035482-T	NR	9E-10		0.0312	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
666	chr1	10690947	10690948	rs17035482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.22	NR	rs17035482-T	NR	3E-11		0.0339	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr1	10694906	10694907	rs61776290	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	1p36.22	NR	rs61776290-T	0.11	2E-7		1.48	[1.32-1.64]	Illumina [4058415] (imputed)	N
666	chr1	10697878	10697879	rs199867187	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.22	NR	rs199867187-G	0.2745	1E-6	(EA)	0.0381	[0.023-0.054] unit increase	Illumina [~ 11800000] (imputed)	N
666	chr1	10702265	10702266	rs117131266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.22		rs117131266-A	NR	5E-14		0.0321	[0.024-0.041] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
666	chr1	10712464	10712465	rs10157038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.22		rs10157038-?	NR	6E-8				NR [~ 8900000] (imputed)	N
666	chr1	10716439	10716440	rs61776295	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.22	NR	rs61776295-T	0.105786	2E-14		0.037992	[0.028-0.048] unit increase	NR [19129689] (imputed)	N
666	chr1	10722503	10722504	rs59985166	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	1p36.22	CASZ1, PEX14	rs59985166-?	NR	4E-18				Affymetrix [up to 7325140] (imputed)	N
666	chr1	10724235	10724236	rs284324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.22	CASZ1	rs284324-A	0.494126	2E-16		0.018441996	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
666	chr1	10730909	10730910	rs74748843	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p36.22	CASZ1	rs74748843-T	0.0707	3E-10		0.0048	[0.0032-0.0064] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
666	chr1	10730909	10730910	rs74748843	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs74748843-T	0.0707	3E-6		0.0077	[0.0044-0.011] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
666	chr1	10731624	10731625	rs284317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.22	CASZ1	rs284317-G	0.495082	1E-15		0.017796641	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	6E-9	(38 ms)	0.0329834	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	6E-9	(32 ms)	0.0321898	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	3E-9	(36 ms)	0.0330817	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	3E-9	(34 ms)	0.0330224	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	3E-8	(30 ms)	0.0309325	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CASZ1	rs578347-C	0.533845	2E-8	(40 ms)	0.0316864	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
666	chr1	10732268	10732269	rs578347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.22	CASZ1	rs578347-T	0.460367	2E-9		0.013565468	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
666	chr1	10733078	10733079	rs143353512	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	1p36.22	CASZ1, PEX14	rs143353512-A	NR	6E-9	(pronasale-left alare distance)	0.287	NR unit decrease	Illumina [7029494] (imputed)	N
666	chr1	10733078	10733079	rs143353512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.22		rs143353512-?	NR	6E-25				NR [~ 8900000] (imputed)	N
666	chr1	10733078	10733079	rs143353512	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.22	NR	rs143353512-A	0.0366354	2E-42		0.110882	[0.095-0.127] unit increase	NR [19129689] (imputed)	N
666	chr1	10733080	10733081	rs284316	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p36.22	CASZ1	rs284316-C	0.3331	2E-9		6.044	NR z score increase	Illumina [26237160] (imputed)	N
666	chr1	10733080	10733081	rs284316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.22		rs284316-?	NR	1E-8				NR [~ 8900000] (imputed)	N
666	chr1	10734334	10734335	rs4845945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p36.22		rs4845945-A	NR	2E-11		0.0259	[0.018-0.034] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
666	chr1	10737225	10737226	rs284312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs284312-T	0.449458	3E-12				Affymetrix, Illumina [24332387] (imputed)	N
666	chr1	10738530	10738531	rs6540943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.22	NR	rs6540943-A	0.453953	4E-15		0.015283	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
666	chr1	10740334	10740335	rs7523471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.22	CASZ1	rs7523471-G	0.454953	4E-11		0.014646912	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
666	chr1	10743041	10743042	rs544722	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.22	NA	rs544722-T	0.4545	3E-9		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
666	chr1	10743362	10743363	rs284262	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.22	NR	rs284262-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
666	chr1	10743362	10743363	rs284262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.22		rs284262-?	NR	7E-9				NR [~ 8900000] (imputed)	N
667	chr1	10750431	10750432	rs516243	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	1p36.22	intergenic	rs516243-A	0.49	9E-6		1.11	[1.06-1.17]	Affymetrix, Illumina [~ 2300000] (imputed)	N
667	chr1	10750918	10750919	rs491334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1p36.22		rs491334-A	0.143378	5E-8		0.0229702	[0.015-0.031] unit increase	Illumina [13478778] (imputed)	N
667	chr1	10753093	10753094	rs59304342	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	CASZ1	rs59304342-A	NR	4E-8		0.0882677	NR unit increase	NR [NR] (imputed)	N
667	chr1	10763814	10763815	rs284289	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CASZ1	rs284289-?	NR	3E-8	(female)	2.00228	[NR] unit decrease	Affymetrix [NR] (imputed)	N
667	chr1	10774855	10774856	rs284247	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.22	Intergenic	rs284247-?		3E-6		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
667	chr1	10774855	10774856	rs284247	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.22	Intergenic	rs284247-?		4E-6		1.098901	[1.05-1.14]	Illumina [7645193] (imputed)	N
667	chr1	10790796	10790797	rs284277	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p36.22	CASZ1	rs284277-C	0.383	1E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	NR	3E-32		0.0235	[0.02-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	0.676279	5E-20		0.0327724	[0.026-0.04] unit increase	Illumina [13477770] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	NR	1E-18		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	0.676293	1E-10		0.0232963	[0.016-0.03] unit increase	Illumina [13477769] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p36.22		rs17035646-A	0.676890894	9E-19		0.07768616	[0.06-0.095] unit increase	Illumina [13134967] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	1p36.22		rs17035646-A	NR	8E-13		0.1001	[0.073-0.128] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	NR	3E-28		0.0223	[0.018-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	0.676294	8E-18		0.031543	[0.024-0.039] unit increase	Illumina [13477767] (imputed)	N
667	chr1	10796546	10796547	rs17035646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.22		rs17035646-A	NR	3E-19		0.0188	[0.015-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
667	chr1	10796546	10796547	rs17035646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.22	CASZ1	rs17035646-A	0.337824	4E-9		0.013834883	[0.0092-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
667	chr1	10796546	10796547	rs17035646	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1p36.22	CASZ1	rs17035646-A	0.3398	1E-8		0.0120302	[0.0079-0.0162] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
667	chr1	10796546	10796547	rs17035646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.22		rs17035646-?	NR	4E-36				NR [~ 8900000] (imputed)	N
667	chr1	10796546	10796547	rs17035646	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	CASZ1	rs17035646-A	0.3372	2E-33		0.4161	[0.35-0.48] mmHg increase	Affymetrix [NR] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	CASZ1	rs17035646-A	0.34	1E-36	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CASZ1	rs17035646-A	0.34	9E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CASZ1	rs17035646-A	0.34	7E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	CASZ1	rs17035646-A	0.35	2E-20	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CASZ1	rs17035646-A	0.34	5E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796546	10796547	rs17035646	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CASZ1	rs17035646-A	0.34	1E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	1p36.22		rs880315-C	NR	2E-29		0.076	[0.063-0.089] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p36.22		rs880315-C	NR	5E-47		0.0883	[0.076-0.1] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1p36.22		rs880315-C	NR	7E-19		0.0627	[0.049-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.22		rs880315-C	NR	8E-33		0.0621	[0.052-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.22		rs880315-C	0.681765548	1E-10		0.057121746	[0.04-0.075] unit increase	Illumina [13134967] (imputed)	N
667	chr1	10796865	10796866	rs880315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	1p36.22		rs880315-C	0.681036	8E-12		0.0255041	[0.018-0.033] unit increase	Illumina [13477770] (imputed)	N
667	chr1	10796865	10796866	rs880315	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p36.22	CASZ1	rs880315-T	0.65979	2E-8		0.0119226	[0.0078-0.0161] unit increase	Affymetrix [NR] (imputed)	N
667	chr1	10796865	10796866	rs880315	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p36.22	CASZ1	rs880315-T	0.659761	7E-12		0.015148	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
667	chr1	10796865	10796866	rs880315	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	1p36.22	CASZ1	rs880315-C	0.337723	2E-26		0.089395955	[0.073-0.106] unit increase	Affymetrix [7288503] (imputed)	N
667	chr1	10796865	10796866	rs880315	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p36.22	CASZ1	rs880315-C	0.339218	1E-30		0.09883418	[0.082-0.116] unit increase	Affymetrix [7288503] (imputed)	N
667	chr1	10796865	10796866	rs880315	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p36.22	CASZ1	rs880315-C	0.339584	7E-24		0.06473087	[0.052-0.077] unit increase	Affymetrix [7288503] (imputed)	N
667	chr1	10796865	10796866	rs880315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.22		rs880315-?	NR	2E-24				NR [~ 8900000] (imputed)	N
667	chr1	10796865	10796866	rs880315	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p36.22	NR	rs880315-T	0.3193	1E-23	(East Asian)	0.6998	[0.56-0.84] unit decrease	Illumina [6200000] (imputed)	N
667	chr1	10796865	10796866	rs880315	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	1p36.22	CASZ1	rs880315-T	0.3193	8E-12	(East Asian)	0.3262	[0.23-0.42] unit decrease	Illumina [6200000] (imputed)	N
667	chr1	10796865	10796866	rs880315	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p36.22	CASZ1	rs880315-T	0.3193	3E-23	(East Asian)	0.4872	[0.39-0.58] unit decrease	Illumina [6200000] (imputed)	N
667	chr1	10796865	10796866	rs880315	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	1p36.22	CASZ1	rs880315-T	0.3194	7E-24	(East Asian)	0.1224	[0.099-0.146] unit decrease	Illumina [6200000] (imputed)	N
667	chr1	10796865	10796866	rs880315	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p36.22	CASZ1	rs880315-T	0.3193	1E-18	(East Asian)	0.3849	[0.3-0.47] unit decrease	Illumina [6200000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p36.22	CASZ1	rs880315-C	0.37	5E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
667	chr1	10796865	10796866	rs880315	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	1p36.22	CASZ1	rs880315-?	NR	4E-10				NR [~ 8000000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	1p36.22	CASZ1	rs880315-?	NR	7E-8				NR [~ 8000000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	1p36.22	CASZ1	rs880315-?	NR	3E-6				NR [~ 8000000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	1p36.22	CASZ1	rs880315-?	NR	6E-9				NR [~ 8000000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	1p36.22	CASZ1	rs880315-?	NR	1E-6				NR [~ 8000000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	CASZ1	rs880315-?	NR	2E-54				Affymetrix, Illumina [18800000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	CASZ1	rs880315-?		7E-42				Affymetrix, Illumina [18800000] (imputed)	N
667	chr1	10796865	10796866	rs880315	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	1p36.22	CASZ1	rs880315-?	NR	7E-18		0.03499	[0.027-0.043] unit increase	Illumina [6108953] (imputed)	N
667	chr1	10796865	10796866	rs880315	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	1p36.22	CASZ1	rs880315-?	NR	5E-9		0.02362	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
667	chr1	10796865	10796866	rs880315	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	1p36.22	CASZ1	rs880315-?	NR	2E-16		0.03378	[0.026-0.042] unit increase novel	Illumina [6108953] (imputed)	N
667	chr1	10796865	10796866	rs880315	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	1p36.22	CASZ1	rs880315-?	NR	6E-12		0.02794	[0.02-0.036] unit increase	Illumina [6108953] (imputed)	N
667	chr1	10796865	10796866	rs880315	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	CASZ1	rs880315-C	0.351	9E-16	(EA, initial)	0.64	[0.48-0.8] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
667	chr1	10796865	10796866	rs880315	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	CASZ1	rs880315-C	0.351	2E-10	(EA, initial)	0.331	[0.23-0.43] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
667	chr1	10796865	10796866	rs880315	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	CASZ1	rs880315-C	0.351	4E-10	(EA, initial)	0.302	[0.21-0.4] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		1E-7		0.345	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		5E-17		0.364	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		6E-9		0.168	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		7E-6	(EA)	0.211	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		6E-8		0.229	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	CASZ1	rs880315-T		2E-12		0.185	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10796865	10796866	rs880315	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p36.22	CASZ1	rs880315-T	0.641	2E-14		0.475	[0.35-0.6] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
667	chr1	10796865	10796866	rs880315	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p36.22	CASZ1	rs880315-T	0.641	1E-11		0.257	[0.18-0.33] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
667	chr1	10796865	10796866	rs880315	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1p36.22	CASZ1	rs880315-G	0.320712336691543	5E-17		0.40930188	[0.31-0.51] unit increase	Illumina [247039]	N
667	chr1	10796865	10796866	rs880315	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p36.22	CASZ1	rs880315-T	0.6333	6E-16		0.0269	unit decrease	Illumina [242296]	N
667	chr1	10796865	10796866	rs880315	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	1p36.22	CASZ1	rs880315-T	0.65	9E-6		0.042	[0.024-0.06] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
667	chr1	10796865	10796866	rs880315	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	1p36.22	CASZ1	rs880315-C	0.63	6E-10		0.97	[0.66-1.28] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
667	chr1	10796865	10796866	rs880315	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	1p36.22	CASZ1	rs880315-C	0.63	2E-9				Affymetrix, Illumina [2485448] (imputed)	N
667	chr1	10796865	10796866	rs880315	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	1p36.22	CASZ1	rs880315-C	0.63	8E-8		0.46	[0.28-0.64] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
667	chr1	10796865	10796866	rs880315	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p36.22	CASZ1	rs880315-C	0.65	7E-7	(Systolic)	0.74	[0.45-1.03] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
667	chr1	10796865	10796866	rs880315	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p36.22	CASZ1	rs880315-C	0.65	3E-10	(Diastolic)	0.56	[0.38-0.74] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
667	chr1	10797428	10797428	rs35295665	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	CASZ1	rs35295665-?	0.64	5E-27	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10797428	10797428	rs35295665	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	CASZ1	rs35295665-?	0.64	9E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10798488	10798489	rs34071855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p36.22		rs34071855-G	NR	2E-10		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
667	chr1	10798488	10798489	rs34071855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.22		rs34071855-G	NR	2E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
667	chr1	10798488	10798489	rs34071855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p36.22		rs34071855-G	NR	5E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
667	chr1	10798488	10798489	rs34071855	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p36.22	NR	rs34071855-C	0.325	4E-8		0.7013	[0.45-0.95] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
667	chr1	10798488	10798489	rs34071855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs34071855-G	0.402174	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
667	chr1	10798488	10798489	rs34071855	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1p36.22	CASZ1	rs34071855-C	NR	7E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
667	chr1	10798488	10798489	rs34071855	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	1p36.22	CASZ1	rs34071855-G	NR	6E-9		1.0432074	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
667	chr1	10798488	10798489	rs34071855	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls	NA	1p36.22	CASZ1	rs34071855-G	0.339889	7E-9		0.110219374	[0.073-0.148] unit increase	Affymetrix [7288503] (imputed)	N
667	chr1	10798488	10798489	rs34071855	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	CASZ1	rs34071855-G	0.6558	2E-10		0.1644	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
667	chr1	10798488	10798489	rs34071855	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CASZ1	rs34071855-C	0.65	4E-20	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10798488	10798489	rs34071855	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CASZ1	rs34071855-C	0.65	5E-29	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10798488	10798489	rs34071855	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CASZ1	rs34071855-C	0.64	2E-26	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
667	chr1	10798551	10798552	rs682178	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p36.22	NR	rs682178-T	0.631643	5E-10		0.0122107	[0.0084-0.0161] unit increase	Affymetrix [15000001]	N
667	chr1	10799576	10799577	rs12046278	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	1p36.22	NR	rs12046278-T	0.3418	3E-7		0.9168	[0.57-1.27] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
667	chr1	10799576	10799577	rs12046278	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p36.22	CASZ1	rs12046278-T	0.65491	9E-13		0.0155363	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
667	chr1	10799576	10799577	rs12046278	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	931 European ancestry cases, 228 African American ancestry cases, 14,210 European ancestry controls, 2,480 African American ancestry controls	NA	1p36.22	CASZ1	rs12046278-?	NR	2E-9		1.4084507	[1.25-1.59]	Affymetrix, Illumina [NR] (imputed)	N
667	chr1	10799576	10799577	rs12046278	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	931 European ancestry cases, 14,210 European ancestry controls	NA	1p36.22	CASZ1	rs12046278-C	0.63	1E-8		1.4084507	[1.25-1.59]	Affymetrix, Illumina [NR] (imputed)	N
667	chr1	10799576	10799577	rs12046278	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistance to antihypertensive treatment in hypertension	931 European ancestry cases, 14,210 European ancestry controls	11,762 European ancestry cases, 42,850 European ancestry controls	1p36.22	CASZ1	rs12046278-C	0.354	9E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [NR] (imputed)	N
667	chr1	10799576	10799577	rs12046278	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p36.22	CASZ1	rs12046278-C	0.343988	3E-13		0.063121654	[0.046-0.08] unit increase	Affymetrix [7288503] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs12046278-T		1E-8		0.358	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs12046278-T		5E-18		0.367	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs12046278-T		3E-9		0.169	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs12046278-T		7E-9		0.235	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs12046278-T		1E-6	(EA)	0.218	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs12046278-T		2E-12		0.181	unit decrease	Affymetrix [at least 2696785] (imputed)	N
667	chr1	10799576	10799577	rs12046278	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	1p36.22	CASZ1	rs12046278-T	0.64	5E-6		0.53	[0.29-0.77] mm Hg decrease	Affymetrix, Illumina [2533153] (imputed)	N
667	chr1	10815420	10815421	rs205484	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.22	PEX14	rs205484-?	NR	5E-6	(CE 20:4)	0.6210061	[0.36-0.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
667	chr1	10822807	10822808	rs2073017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	1p36.22		rs2073017-C	NR	6E-10		0.0435	[0.03-0.057] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
667	chr1	10822807	10822808	rs2073017	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	1p36.22	NR	rs2073017-C	NR	1E-11		0.9422		Affymetrix [9869154] (imputed)	N
667	chr1	10822807	10822808	rs2073017	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	1p36.22	CASZ1	rs2073017-C	NR	1E-6		0.98	[0.97-0.99]	Affymetrix [9869154] (imputed)	N
667	chr1	10825576	10825577	rs11121615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1p36.22		rs11121615-T	NR	1E-103		0.2466	[0.22-0.27] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
667	chr1	10825576	10825577	rs11121615	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.22	CASZ1	rs11121615-T	0.6894	2E-22		0.02	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
667	chr1	10825576	10825577	rs11121615	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p36.22	NR	rs11121615-T	0.690136	2E-13		0.0550427	[0.041-0.069] unit decrease	Affymetrix [17914406] (imputed)	N
667	chr1	10825576	10825577	rs11121615	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	1p36.22		rs11121615-T	0.691425	3E-76		0.0070457	[0.0063-0.0078] unit decrease	Affymetrix [10829469] (imputed)	N
667	chr1	10825576	10825577	rs11121615	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	1p36.22	NR	rs11121615-T	0.69	4E-65		0.263	[0.23-0.29] unit decrease	Affymetrix [10972371] (imputed)	N
667	chr1	10834890	10834891	rs12076104	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megasphaera elsdenii abundance in stool	5,959 Finnish ancestry individuals	NA	1p36.22		rs12076104-T	0.0192828	4E-8		0.25006	[0.16-0.34] unit increase	Illumina [7980478] (imputed)	N
668	chr1	10917775	10917776	rs116698163	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p36.22	HSPE1P24	rs116698163-T	0.0012	9E-6		1.1745	[0.65-1.69] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
669	chr1	11033081	11033082	rs12565727	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	NR	rs12565727-G	NR	8E-53		0.11	NR unit decrease	NR [NR] (imputed)	N
669	chr1	11033081	11033082	rs12565727	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	1p36.22	TARDBP	rs12565727-A	0.789	9E-11		1.33	[1.22-1.45]	Affymetrix, Illumina [2391230] (imputed)	N
669	chr1	11033321	11033322	rs2095921	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1p36.22		rs2095921-G	0.23	1E-29		0.27	[0.23-0.31] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
669	chr1	11033321	11033322	rs2095921	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	NR	rs2095921-G	NR	9E-53		0.11	NR unit decrease	NR [NR] (imputed)	N
669	chr1	11033321	11033322	rs2095921	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	1p36.22	C1orf127	rs2095921-?	NR	3E-27		1.344086	[1.27-1.42]	Illumina [13436641] (imputed)	N
669	chr1	11035757	11035758	rs77578010	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	1p36.22		rs77578010-A	NR	1E-36		0.0169467	[0.014-0.02] years increase	NR [7400000] (imputed)	N
669	chr1	11035757	11035758	rs77578010	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	1p36.22		rs77578010-A	NR	2E-15		0.00844285	[0.0063-0.0106] years decrease	NR [7400000] (imputed)	N
669	chr1	11035757	11035758	rs77578010	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1p36.22		rs77578010-A	NR	1E-20		0.03630338	[0.029-0.044] years increase	NR [7400000] (imputed)	N
669	chr1	11037050	11037051	rs6685766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.22		rs6685766-?	NR	4E-43				NR [~ 8900000] (imputed)	N
669	chr1	11037135	11037136	rs6696575	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.22	NR	rs6696575-A	0.219774	2E-211		0.114268	[0.11-0.12] unit decrease	NR [19129689] (imputed)	N
669	chr1	11037433	11037434	rs112115136	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.22	c1orf127	rs112115136-A	0.2198	7E-36		1.119	NR	Affymetrix [9154080] (imputed)	N
669	chr1	11038475	11038476	rs11121667	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA		C1orf127	rs11121667-?	NR	3E-6				Affymetrix [536506]	N
669	chr1	11038475	11038476	rs11121667	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA		ANGPTL7, C1orf127, CASZ1, EXOSC10, MASP2, MTOR, MTOR-AS1, SRM, TARDBP, UBIAD1	rs11121667-?	NR	4E-7				Illumina [9143600] (imputed)	N
669	chr1	11040068	11040069	rs7542053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.22		rs7542053-?	NR	2E-152				NR [~ 8900000] (imputed)	N
669	chr1	11040384	11040385	rs7542354	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p36.22	DFFA	rs7542354-G	NR	6E-49		0.249395	[0.22-0.28] unit decrease	Affymetrix [27512692] (imputed)	N
669	chr1	11040384	11040385	rs7542354	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	C1orf127, TARDBP	rs7542354-A	NR	6E-55		0.116451	NR unit decrease	NR [NR] (imputed)	N
669	chr1	11046854	11046855	rs9430161	22327514	Postel-Vinay S	2012-02-12	Nat Genet	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	1p36.22	TARDBP	rs9430161-G	0.79	1E-20		2.2	[1.77-2.72]	NR [286966]	N
669	chr1	11058973	11058974	rs7521435	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	1p36.22		rs7521435-?	NR	2E-6		0.23	[0.13-0.33] unit increase	Affymetrix, Illumina [NR] (imputed)	N
669	chr1	11074998	11074999	rs34247753	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.22	MASP2, TARDBP	rs34247753-C	NR	1E-8		0.0482657	NR unit increase	NR [NR] (imputed)	N
669	chr1	11078398	11078398	rs138627759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p36.22		rs138627759-AATCTTTG	NR	3E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
669	chr1	11079076	11079077	rs2273348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.22	NR	rs2273348-G	NR	3E-9		0.0192	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
669	chr1	11090915	11090916	rs12711521	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p36.22	MASP2	rs12711521-C	0.2097	1E-8		0.0127	[0.0084-0.017] unit increase	Illumina [246328]	N
669	chr1	11095953	11095957	rs770450501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	MASP2	rs770450501-C	0.818522	6E-10		0.01842967	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
669	chr1	11112835	11112836	rs1884429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.22	NR	rs1884429-C	NR	3E-10		0.0196	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr1	11112835	11112836	rs1884429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p36.22	NR	rs1884429-C	NR	5E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr1	11112835	11112836	rs1884429	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.22	NR	rs1884429-?	NR	3E-8	(male)	0.22857	[0.15-0.31] unit decrease	Affymetrix [7794483] (imputed)	N
669	chr1	11112835	11112836	rs1884429	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.22	NR	rs1884429-?	NR	2E-12		0.18356	[0.13-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
669	chr1	11112835	11112836	rs1884429	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.22	NA	rs1884429-T	0.2348	2E-12		0.0134	[0.0097-0.0171] unit increase	NR [~ 27400000] (imputed)	N
669	chr1	11119134	11119135	rs743577	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1p36.22	SRM	rs743577-?	NR	1E-10		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [21347608] (imputed)	N
669	chr1	11119134	11119135	rs743577	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1p36.22	SRM	rs743577-?	NR	3E-13		0.0032	[0.0022-0.0042] unit decrease	Affymetrix [21347608] (imputed)	N
669	chr1	11127510	11127511	rs12569242	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.22		rs12569242-?	NR	2E-21		0.0215932	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
669	chr1	11128653	11128654	rs2791655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.22		rs2791655-A	NR	1E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
669	chr1	11128653	11128654	rs2791655	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.22	EXOSC10	rs2791655-G	0.279671	9E-20		0.0186244	[0.015-0.023] unit decrease	NR [13737936] (imputed)	N
670	chr1	11157242	11157243	rs534975221	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	1p36.22		rs534975221-G	0.992689	2E-13		0.366665	[0.27-0.47] increase	Affymetrix [11014269] (imputed)	N
670	chr1	11157242	11157243	rs534975221	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p36.22	EXOSC10	rs534975221-G	0.9922	2E-21		0.7542	[0.6-0.91] unit increase	Affymetrix [~ 11900000] (imputed)	N
670	chr1	11160673	11160674	rs2791644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.22		rs2791644-?	NR	9E-8				NR [~ 8900000] (imputed)	N
670	chr1	11170130	11170131	rs2261434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.22		rs2261434-?	NR	2E-21				NR [~ 8900000] (imputed)	N
670	chr1	11171225	11171226	rs17036350	21665993	Han S	2011-06-10	Hum Mol Genet	Association of variants in FRAP1 and PDGFRA with corneal curvature in Asian populations from Singapore.	Corneal curvature	2,008 Chinese ancestry inidividuals, 2,281 Malay ancestry individuals	2,142 Asian Indian ancestry individuals, 929 Chinese ancestry children	1p36.22	FRAP1	rs17036350-T	0.20	4E-13		0.178	[0.11-0.25] unit increase	Illumina [462291]	N
670	chr1	11171541	11171541	rs112659347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.22	MTOR	rs112659347-GA	0.709052	1E-21		0.024000792	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr1	11171541	11171541	rs112659347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.22	MTOR	rs112659347-GA	0.708897	5E-16		0.020629723	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr1	11186896	11186897	rs3737611	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	1p36.22		rs3737611-A	NR	2E-22		0.0425	[0.034-0.051] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
670	chr1	11186896	11186897	rs3737611	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	1p36.22		rs3737611-A	0.98	1E-46		0.041	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
670	chr1	11186896	11186897	rs3737611	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	1p36.22		rs3737611-A	0.83	7E-21		0.041	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
670	chr1	11207268	11207269	rs2791643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.22		rs2791643-?	NR	2E-11				NR [~ 8900000] (imputed)	N
670	chr1	11209781	11209782	rs184689679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.22		rs184689679-?	NR	2E-8				NR [~ 8900000] (imputed)	N
670	chr1	11212457	11212458	rs11581010	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p36.22	NA	rs11581010-A	0.7641	9E-12		0.0135	[0.0096-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.22	MTOR	rs75077113-C	0.278422	4E-9		0.0147765	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.22	NR	rs75077113-C	0.283157	2E-10		0.013472	[0.0093-0.0176] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.22	NR	rs75077113-C	0.277405	2E-22		0.00886429	[0.007-0.0107] unit increase	Affymetrix [16582909] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p36.22	NR	rs75077113-C	0.27748399999999995	3E-16		0.011604	[0.0089-0.0143] unit increase	Affymetrix [16585854] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.22	NR	rs75077113-C	0.277405	2E-11		0.0070989	[0.005-0.0092] unit increase	Affymetrix [16582965] (imputed)	N
670	chr1	11214581	11214582	rs75077113	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p36.22	NR	rs75077113-C	0.27748399999999995	5E-10		0.0102254	[0.0071-0.0134] unit increase	Affymetrix [16585866] (imputed)	N
670	chr1	11214581	11214582	rs75077113	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.22		rs75077113-?	NR	2E-20		0.0204864	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
670	chr1	11214581	11214582	rs75077113	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.22	MTOR	rs75077113-A	0.718606	1E-10		0.022928	[0.016-0.03] unit increase	NR [17166351] (imputed)	N
670	chr1	11214581	11214582	rs75077113	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.22	MTOR	rs75077113-A	0.717524	2E-6	(women)	0.0217809	[0.012-0.032] unit increase	NR [17166351] (imputed)	N
670	chr1	11214583	11214584	rs77270747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p36.22		rs77270747-C	NR	3E-16		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
670	chr1	11222392	11222393	rs7553827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.22	MTOR	rs7553827-C	NR	5E-9		0.0196349	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
670	chr1	11249131	11249132	rs1034528	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p36.22	NR	rs1034528-C	0.259303	3E-11		0.0528949	[0.038-0.068] unit increase	Affymetrix [17914406] (imputed)	N
670	chr1	11252715	11252716	rs1205593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.22	NR	rs1205593-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
670	chr1	11253683	11253684	rs28991009	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p36.22	ANGPTL7	rs28991009-G	0.9922	3E-21		0.7319	[0.58-0.89] unit increase	Affymetrix [~ 11900000] (imputed)	N
670	chr1	11266463	11266464	rs2300092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.22		rs2300092-?	NR	8E-27				NR [~ 8900000] (imputed)	N
670	chr1	11269795	11269796	rs1010447	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	1p36.22	MTOR	rs1010447-T	0.2763	2E-8				Affymetrix, Illumina [2331072] (imputed)	N
671	chr1	11280993	11280994	rs74225573	24963161	Chen P	2014-06-24	Hum Mol Genet	CMPK1 and RBP3 are associated with corneal curvature in Asian populations.	Corneal curvature	3,178 Chinese ancestry individuals, 2,138 Malay ancestry individuals, 2,124 Asian Indian ancestry individuals	2,473 Chinese ancestry individuals, 2,747 Japanese ancestry individuals	1p36.22	MTOR	rs74225573-C	0.18	6E-18		0.16	[0.12-0.20] unit increase	Illumina [~ 7000000] (imputed)	N
671	chr1	11284335	11284336	rs10779751	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p36.22	MTOR	rs10779751-A	0.29	2E-6		0.016	[0.0092-0.0222] kg/m2 increase	Affymetrix, Illumina [2550021]	N
671	chr1	11284335	11284336	rs10779751	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p36.22	MTOR	rs10779751-A	0.277	9E-6	(EA)	0.015	[0.0084-0.0218] kg/m2 increase	Affymetrix, Illumina [2550021]	N
671	chr1	11306278	11306279	rs4845987	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p36.22	NR	rs4845987-G	0.3085	3E-8		0.0282	[0.018-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
671	chr1	11317931	11317932	rs7554251	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.22	NR	rs7554251-C	0.7016	3E-11		0.0297	[0.021-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
671	chr1	11324192	11324193	rs4845860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p36.22		rs4845860-G	NR	2E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
671	chr1	11344628	11344629	rs2788543	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p36.22	UBIAD1	rs2788543-T	0.7061	4E-6		0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
671	chr1	11385628	11385629	rs112736576	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	1p36.22	Intergenic	rs112736576-G	0.071	5E-6		1.14	[0.65-1.63] unit decrease	Illumina [9520174] (imputed)	N
671	chr1	11388791	11388792	rs143038218	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p36.22	UBIAD1	rs143038218-T	0.992	6E-10		0.54	[0.37-0.71] unit increase	Affymetrix, Illumina [NR] (imputed)	N
671	chr1	11394973	11394974	rs146609044	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p36.22	UBIAD1	rs146609044-C	0.0274158661508815	2E-6	(P_Lentisphaerae_HB)	1.023	[0.6-1.45] unit increase	Illumina [7711310] (imputed)	N
672	chr1	11459016	11459017	rs7552089	34409643	Freitag-Wolf S	2021-08-18	J Clin Periodontol	Sex-specific genetic factors affect the risk of early-onset periodontitis in Europeans.	Early onset periodontitis x sex interaction	545 Dutch ancestry women, 351 Dutch ancestry men	NA	1p36.22		rs7552089-?	NR	8E-7				Illumina [79780573] (imputed)	N
672	chr1	11511171	11511172	rs149002763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	1p36.22		rs149002763-T	NR	1E-10		0.3319	[0.23-0.43] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
672	chr1	11531058	11531059	rs4846010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.22		rs4846010-A	0.2128	3E-8		0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
672	chr1	11531058	11531059	rs4846010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p36.22	Intergenic	rs4846010-A	0.2128	8E-9	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
673	chr1	11584163	11584164	rs2076469	34125832	Borda V	2021-06-14	PLoS Negl Trop Dis	Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome.	Congenital Zika syndrome	29 Hispanic or Latin American cases, 11 Hispanic or Latin American controls	NA	1p36.22		rs2076469-G	0.14	3E-6	(dominant model, unadjusted p-value)	0.012	[9.0E-5-0.1136]	NR [144153]	N
673	chr1	11603062	11603063	rs2817619	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	1p36.22	PTCHD2	rs2817619-T	0.442	6E-7				Affymetrix [432921]	N
674	chr1	11696835	11696836	rs10864530	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.22	NR	rs10864530-C	NR	7E-10		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
674	chr1	11697181	11697182	rs4846022	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p36.22	NR	rs4846022-T	NR	2E-9				Affymetrix, Illumina [NR] (imputed)	N
674	chr1	11721024	11721025	rs12047253	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	1p36.22	FBXO44	rs12047253-C	0.1889	3E-10	(DRAXIN)	0.432	[0.3-0.57] unit decrease	Illumina [8683751] (imputed)	N
674	chr1	11736599	11736600	rs2336030	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p36.22	MAD2L2	rs2336030-C	0.65	1E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
674	chr1	11764280	11764281	rs12045323	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	1p36.22	C1orf187	rs12045323-T	NR	7E-6		57.5469	[32.42-82.68] unit increase	Illumina [6995140] (imputed)	N
674	chr1	11771495	11771496	rs76651564	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-femoral pulse wave velocity)	3,643 European ancestry individuals	NA	1p36.22	DRAXIN, MAD2L2, AGTRAP, FBXO6, FBXO44	rs76651564-A	0.02	1E-6		0.192	[0.12-0.27] unit increase	Affymetrix [11342744] (imputed)	N
674	chr1	11788563	11788564	rs4846033	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	1p36.22	intergenic	rs4846033-?	0.01	4E-6		2.87	[NR]	Affymetrix [492900]	N
675	chr1	11803485	11803487	rs34791043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p36.22	AGTRAP	rs34791043-T	0.148258	7E-9		0.018075962	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr1	11824132	11824133	rs4845875	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	Midregional pro atrial natriuretic peptide levels	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	C1orf167, NPPA	rs4845875-C	0.355	3E-9	(Conditional)	0.156	[0.12-0.19] Unit decrease	Illumina [7358451] (imputed)	N
675	chr1	11832960	11832961	rs773397120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	C1orf167	rs773397120-A	NR	2E-8		0.0167182	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
675	chr1	11838450	11838451	rs55738118	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.22	C1orf167	rs55738118-T	0.1089	2E-8		0.0208	[0.014-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
675	chr1	11838645	11838646	rs12134663	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	1p36.22	MTHFR	rs12134663-A	0.8	3E-21		0.101	[0.079-0.123] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
675	chr1	11838761	11838762	rs72640211	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	C1orf167, LOC100506310	rs72640211-A	0.06	1E-13	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11839922	11839923	rs12561919	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	C1orf167, LOC100506310	rs12561919-T	0.14	1E-45	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11839922	11839923	rs12561919	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	C1orf167, LOC100506310	rs12561919-T	0.13	4E-44	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11839922	11839923	rs12561919	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	1p36.22	C1orf167	rs12561919-?		2E-7		1.22	[1.13-1.31]	Illumina [at least 473583] (imputed)	N
675	chr1	11839997	11839998	rs4846044	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	C1orf167, LOC100506310	rs4846044-T	0.04	7E-17	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11843008	11843009	rs137976953	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	C1orf167	rs137976953-C	0.8965	1E-11		0.3061	[0.22-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
675	chr1	11852109	11852110	rs13306556	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	MTHFR	rs13306556-T	0.11	3E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11852515	11852516	rs17375901	19597492	Benjamin EJ	2009-07-13	Nat Genet	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	1p36.22	NPPA, MTHFR	rs17375901-T	0.053	6E-7		1.26		Affymetrix, Illumina [~ 2500000] (imputed)	N
675	chr1	11854475	11854476	rs1801131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	MTHFR	rs1801131-G	NR	4E-9		0.0185199	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
675	chr1	11856377	11856378	rs1801133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	1p36.22		rs1801133-G	0.662601	2E-8		0.0231927	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
675	chr1	11856377	11856378	rs1801133	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.22		rs1801133-A	0.36	2E-8		5.59	z score increase	Affymetrix [9061022] (imputed)	N
675	chr1	11856377	11856378	rs1801133	34707639	Liu T	2021-10-11	Front Genet	Exome-Wide Association Study Identifies East Asian-Specific Missense Variant MTHFR C136T Influencing Homocysteine Levels in Chinese Populations RH: ExWAS of tHCY in a Chinese Population.	Homocysteine levels	5,175 Han Chinese ancestry individuals	688 Han Chinese ancestry individuals	1p36.22		rs1801133-T	0.58	1E-120		0.45	?mol/l increase	Illumina [89131]	N
675	chr1	11856377	11856378	rs1801133	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	1p36.22		rs1801133-A	0.34	9E-8		0.07	unit increase	Illumina [2093892] (imputed)	N
675	chr1	11856377	11856378	rs1801133	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	1p36.22		rs1801133-A	0.34	3E-8		0.08	unit increase	Illumina [2398641] (imputed)	N
675	chr1	11856377	11856378	rs1801133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	MTHFR	rs1801133-A	NR	8E-9		0.0177964	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
675	chr1	11856377	11856378	rs1801133	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	1p36.22	MTHFR	rs1801133-A	0.45	4E-15		1.346	[NR]	Illumina [4867007] (imputed)	N
675	chr1	11856377	11856378	rs1801133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.22	MTHFR	rs1801133-A	0.33642	1E-12		0.018249054	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
675	chr1	11856377	11856378	rs1801133	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p36.22	MTHFR	rs1801133-G	NR	2E-15		1.107052	NR	Affymetrix, Illumina [8278136] (imputed)	N
675	chr1	11856377	11856378	rs1801133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.22		rs1801133-?	NR	1E-23				NR [~ 8900000] (imputed)	N
675	chr1	11856377	11856378	rs1801133	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Serum folate levels	2,232 Irish ancestry individuals	NA	1p36.22	MTHFR	rs1801133-?	NR	3E-11		0.04932	[0.035-0.064] nmol/L decrease	Illumina [758443]	N
675	chr1	11856377	11856378	rs1801133	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Plasma homocysteine levels	2,232 Irish ancestry individuals	NA	1p36.22	MTHFR	rs1801133-?	NR	1E-19		0.03087	[0.024-0.037] ?mol/L increase	Illumina [758443]	N
675	chr1	11856377	11856378	rs1801133	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	1p36.22	MTHFR	rs1801133-?	NR	4E-19				Illumina [1940243] (imputed)	N
675	chr1	11856377	11856378	rs1801133	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	1p36.22	MTHFR	rs1801133-A	0.333	6E-9				Illumina [7300000] (imputed)	N
675	chr1	11856377	11856378	rs1801133	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	1p36.22	MTHFR	rs1801133-A	0.34	4E-104		0.1583	[0.14-0.17] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
675	chr1	11856377	11856378	rs1801133	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Homocysteine levels	1,208 European ancestry individuals	NA	1p36.22	MTHFR	rs1801133-?	NR	2E-11				Illumina [up to 10879115] (imputed)	N
675	chr1	11856377	11856378	rs1801133	20031578	Pare G	2009-04-01	Circ Cardiovasc Genet	Novel associations of CPS1, MUT, NOX4, and DPEP1 with plasma homocysteine in a healthy population: a genome-wide evaluation of 13 974 participants in the Women's Genome Health Study.	Homocysteine levels	13,974 European ancestry females	840 European ancestry females	1p36.22	MTHFR	rs1801133-A	0.33	8E-35	(WGHS)	0.05	[NR] unit increase	Illumina [336469]	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	4E-14				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	2E-17	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	4E-15				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?		3E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	6E-10				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	5E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	5E-10				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11857525	11857526	rs6541006	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6	rs6541006-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11858035	11858036	rs17037388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.22	MTHFR	rs17037388-G	0.163337	3E-9		0.017598467	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
675	chr1	11858035	11858036	rs17037388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.22	MTHFR	rs17037388-G	0.163065	7E-13		0.02163056	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
675	chr1	11858035	11858036	rs17037388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.22		rs17037388-?	NR	7E-13				NR [~ 8900000] (imputed)	N
675	chr1	11858956	11858957	rs45553335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.22	MTHFR	rs45553335-C	0.163715	4E-11		0.019582076	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr1	11858956	11858957	rs45553335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs45553335-C	0.149551	2E-23				Affymetrix, Illumina [24246363] (imputed)	N
675	chr1	11858956	11858957	rs45553335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs45553335-C	0.149458	1E-29				Affymetrix, Illumina [20825802] (imputed)	N
675	chr1	11858956	11858957	rs45553335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.22		rs45553335-?	NR	8E-24				NR [~ 8900000] (imputed)	N
675	chr1	11860464	11860465	rs13306567	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p36.22	NR	rs13306567-C	0.9469	3E-6		0.0178	[0.01-0.025] unit increase	NR [~ 27400000] (imputed)	N
675	chr1	11860842	11860843	rs17037390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.22	MTHFR	rs17037390-A	0.164085	3E-22		0.028798906	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr1	11860842	11860843	rs17037390	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p36.22	CLCN6, MTHFR	rs17037390-A	0.1674	2E-7		0.0395	[0.025-0.054] unit decrease	NR [8041861] (imputed)	N
675	chr1	11860842	11860843	rs17037390	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p36.22	MTHFR, NPPB	rs17037390-A	0.155	6E-29		0.908	[0.75-1.07] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
675	chr1	11860842	11860843	rs17037390	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p36.22	MTHFR, NPPB	rs17037390-A	0.155	1E-23		0.499	[0.4-0.6] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
675	chr1	11861854	11861855	rs45603435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.22	NR	rs45603435-G	0.162098	2E-11		0.01686	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
675	chr1	11862213	11862214	rs9651118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs9651118-T	0.783637	7E-21				Affymetrix, Illumina [22063850] (imputed)	N
675	chr1	11862213	11862214	rs9651118	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	1p36.22	MTHFR	rs9651118-A	0.65	2E-19		1.5384616	[NR]	Illumina [747089]	N
675	chr1	11862777	11862778	rs17367504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs17367504-A	0.840078	2E-14				Affymetrix, Illumina [17210439] (imputed)	N
675	chr1	11862777	11862778	rs17367504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.22	NR	rs17367504-A	0.838766	7E-16		0.020945	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
675	chr1	11862777	11862778	rs17367504	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	1p36.22	MTHFR	rs17367504-?	NR	4E-34		0.1006982	NR unit increase	Affymetrix [464137]	N
675	chr1	11862777	11862778	rs17367504	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1p36.22	MTHFR	rs17367504-G	0.166674	3E-13		0.029878	[0.022-0.038] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
675	chr1	11862777	11862778	rs17367504	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Diastolic blood pressure	up to 33,431 European ancestry individuals	NA	1p36.22	MTHFR	rs17367504-G	0.1469	3E-9		0.55987895	[0.38-0.74] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
675	chr1	11862777	11862778	rs17367504	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	MTHFR, NPPB, CLCN6	rs17367504-?	NR	5E-43				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11862777	11862778	rs17367504	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	MTHFR, NPPB, CLCN6	rs17367504-?		9E-40				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11862777	11862778	rs17367504	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	MTHFR, NPPB	rs17367504-G	0.153	1E-16	(EA, initial)	0.818	[0.62-1.01] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
675	chr1	11862777	11862778	rs17367504	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	MTHFR, NPPB	rs17367504-G	0.153	3E-18	(EA, initial)	0.526	[0.41-0.64] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		4E-9		0.439	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		2E-9	(EA)	0.495	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		1E-40		0.695	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		8E-6		0.221	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		4E-19		0.311	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		7E-6		0.218	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		2E-6	(EA)	0.253	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	MTHFR	rs17367504-A		5E-32		0.374	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11862777	11862778	rs17367504	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1p36.22	MTHFR	rs17367504-G	0.146671130760102	9E-21		0.5984334	[0.47-0.72] unit decrease	Illumina [247039]	N
675	chr1	11862777	11862778	rs17367504	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p36.22	MTHFR, NPPB	rs17367504-A	0.8383	8E-17		0.0408	unit increase	Illumina [242296]	N
675	chr1	11862777	11862778	rs17367504	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	1p36.22	NPPB, MTHFR	rs17367504-G	0.17	2E-16	(Mean Arterial Pressure)	0.534	[0.40-0.66] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
675	chr1	11862777	11862778	rs17367504	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	1p36.22	NPPA, CLCN6, NPPB, AGTRAP, MTHFR	rs17367504-G	0.14	2E-13		0.85	[0.63-1.07] mm Hg decrease	Affymetrix, Illumina [2497993] (imputed)	N
675	chr1	11864585	11864586	rs3753584	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p36.22	MTHFR	rs3753584-C	0.163965	7E-16		0.08728901	[0.066-0.108] unit decrease	Affymetrix [7288503] (imputed)	N
675	chr1	11864585	11864586	rs3753584	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CLCN6	rs3753584-T	0.84	3E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11864585	11864586	rs3753584	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CLCN6	rs3753584-T	0.84	1E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11864585	11864586	rs3753584	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CLCN6	rs3753584-T	0.84	5E-18	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11864585	11864586	rs3753584	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	Midregional pro atrial natriuretic peptide levels	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	MTHFR, NPPA	rs3753584-C	0.851	4E-13		0.275	[0.20-0.35] Unit increase	Illumina [7358451] (imputed)	N
675	chr1	11865803	11865804	rs13306561	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Red blood cell folate levels	2,232 Irish ancestry individuals	NA	1p36.22	MTHFR	rs13306561-?	NR	9E-12		0.04649	[0.033-0.060] nmol/L increase	Illumina [758443]	N
675	chr1	11865803	11865804	rs13306561	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	CLCN6	rs13306561-A	0.86	6E-16	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11868284	11868288	rs151161966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.22	CLCN6	rs151161966-T	0.684157	4E-24		0.02463	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
675	chr1	11875978	11875979	rs146547070	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.22	NR	rs146547070-A	0.01045	5E-12	(RBP1)	0.08169	NR unit increase	Illumina [1671387] (imputed)	N
675	chr1	11876661	11876662	rs17376328	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Systolic blood pressure	up to 33,431 European ancestry individuals	NA	1p36.22	CLCN6	rs17376328-A	0.051	7E-6		1.5660132	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
675	chr1	11876661	11876662	rs17376328	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Diastolic blood pressure	up to 33,431 European ancestry individuals	NA	1p36.22	CLCN6	rs17376328-A	0.051	3E-6		0.9268097	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	9E-20				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	6E-18	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?		9E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	CLCN6, MTHFR, NPPA	rs202071545-?	NR	9E-20				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	6E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	2E-17				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	6E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11878161	11878161	rs202071545	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	MTHFR, CLCN6, NPPA	rs202071545-?	NR	5E-16				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11879698	11879699	rs2050265	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p36.22	CLCN6	rs2050265-G	0.164122	7E-14		0.08317471	[0.061-0.105] unit decrease	Affymetrix [7288503] (imputed)	N
675	chr1	11880730	11880731	rs149764880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p36.22		rs149764880-T	NR	1E-50		0.0455	[0.04-0.051] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
675	chr1	11880730	11880731	rs149764880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p36.22		rs149764880-T	NR	1E-50		0.0462	[0.04-0.052] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
675	chr1	11880730	11880731	rs149764880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.22		rs149764880-T	NR	1E-37		0.0412	[0.035-0.047] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
675	chr1	11880730	11880731	rs149764880	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CLCN6	rs149764880-T	0.12	4E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11880730	11880731	rs149764880	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CLCN6	rs149764880-T	0.12	2E-38	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11880754	11880755	rs138473600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.22		rs138473600-T	NR	1E-26		0.0313	[0.026-0.037] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
675	chr1	11881140	11881141	rs545709142	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p36.22		rs545709142-C	0.837	3E-19		0.13	[0.1-0.16] % increase	Affymetrix [NR] (imputed)	N
675	chr1	11881140	11881141	rs545709142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p36.22	CLCN6	rs545709142-A	0.162	2E-11		0.03218788	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
675	chr1	11882141	11882142	rs6669371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1p36.22		rs6669371-G	NR	8E-14		0.0829	[0.061-0.105] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
675	chr1	11882141	11882142	rs6669371	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	CLCN6	rs6669371-G	0.8429	5E-52		0.6877	[0.6-0.78] mmHg increase	Affymetrix [NR] (imputed)	N
675	chr1	11882141	11882142	rs6669371	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	CLCN6	rs6669371-T	0.84	4E-41	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11883530	11883531	rs12567119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	1p36.22		rs12567119-T	NR	9E-13		0.0758	[0.055-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
675	chr1	11883530	11883531	rs12567119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p36.22		rs12567119-T	NR	1E-15		0.0866	[0.065-0.108] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
675	chr1	11883530	11883531	rs12567119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.22		rs12567119-T	NR	1E-23		0.0814	[0.066-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
675	chr1	11883530	11883531	rs12567119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	CLCN6	rs12567119-T	NR	9E-11		0.0244825	[0.017-0.032] unit increase	Affymetrix [321016] (imputed)	N
675	chr1	11883534	11883534	rs539574797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p36.22	NR	rs539574797-CA	NR	1E-9		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
675	chr1	11883730	11883731	rs12567136	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	1p36.22	CLCN6	rs12567136-T	0.163932	9E-13		0.07584197	[0.055-0.097] unit decrease	Affymetrix [7288503] (imputed)	N
675	chr1	11885646	11885647	rs56153133	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.22	NR	rs56153133-G	0.16173	6E-29		0.029075	[0.024-0.034] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
675	chr1	11885646	11885647	rs56153133	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p36.22	CLCN6	rs56153133-G	0.162373	9E-24		0.08190656	[0.066-0.098] unit decrease	Affymetrix [7288503] (imputed)	N
675	chr1	11885646	11885647	rs56153133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.22		rs56153133-?	NR	3E-37				NR [~ 8900000] (imputed)	N
675	chr1	11887302	11887303	rs7537765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p36.22		rs7537765-G	NR	3E-20		0.0261	[0.021-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
675	chr1	11887302	11887303	rs7537765	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p36.22	NR	rs7537765-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
675	chr1	11888383	11888384	rs198401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	CLCN6	rs198401-G	NR	1E-10		0.0181841	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
675	chr1	11889814	11889815	rs112521149	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p36.22	NR	rs112521149-G	0.890774	4E-8		0.0169696	[0.011-0.023] unit increase	Affymetrix [15000001]	N
675	chr1	11889814	11889815	rs112521149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.22	CLCN6	rs112521149-A	0.1096	3E-9		0.03431455	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
675	chr1	11889817	11889818	rs113712703	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.22	CLCN6	rs113712703-A	0.910524	3E-8	(-14 ms)	0.0603397	[0.039-0.082] unit increase	Affymetrix [10000000] (imputed)	N
675	chr1	11895666	11895667	rs74053327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	CLCN6	rs74053327-C	NR	2E-8		0.0356759	[0.023-0.048] unit increase	Affymetrix [321788] (imputed)	N
675	chr1	11895674	11895675	rs17037452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	CLCN6	rs17037452-G	NR	9E-14		0.029296	[0.022-0.037] unit increase	Affymetrix [321788] (imputed)	N
675	chr1	11895674	11895675	rs17037452	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	1p36.22	CLCN6	rs17037452-A	0.837	9E-6		0.024	[0.014-0.034] unit increase	Affymetrix [~ 10446505] (imputed)	N
675	chr1	11895674	11895675	rs17037452	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CLCN6	rs17037452-A	0.84	6E-20	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11895674	11895675	rs17037452	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	CLCN6	rs17037452-A	0.84	1E-21	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11895794	11895795	rs55857306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p36.22		rs55857306-A	NR	3E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
675	chr1	11895794	11895795	rs55857306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.22		rs55857306-?	NR	8E-89				NR [~ 8900000] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs55892892-C		6E-12	(EA)	0.913	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs55892892-C		1E-12		0.897	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs55892892-C		2E-31		0.993	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs55892892-C		8E-12		0.578	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p36.22	NR	rs55892892-C		1E-10	(EA)	0.572	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs55892892-C		8E-20		0.517	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11896855	11896856	rs55892892	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.22	NR	rs55892892-C		4E-18		0.451	unit increase	Affymetrix [at least 2696785] (imputed)	N
675	chr1	11899032	11899033	rs1023252	21273288	Del Greco M F	2011-01-27	Hum Mol Genet	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	1p36.22	CLCN6	rs1023252-T	0.26	4E-16		0.2	[0.16-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
675	chr1	11904075	11904076	rs198358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.22		rs198358-C	NR	6E-21		0.0233	[0.018-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
675	chr1	11904075	11904076	rs198358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.22	NPPA-AS1	rs198358-C	NR	5E-11		0.021323	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
675	chr1	11904075	11904076	rs198358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.22	NPPA-AS1	rs198358-C	0.24763	1E-11		0.019152077	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr1	11904075	11904076	rs198358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.22	NPPA-AS1	rs198358-C	0.247592	1E-20		0.0227568	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr1	11904075	11904076	rs198358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.22	NR	rs198358-C	0.246026	4E-24		0.02135	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
675	chr1	11904075	11904076	rs198358	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.22	NR	rs198358-C	0.24827	7E-13		0.0066187	[0.0047-0.0085] unit increase	Affymetrix [16582909] (imputed)	N
675	chr1	11904075	11904076	rs198358	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p36.22	NR	rs198358-C	0.24831999999999999	9E-11		0.00847632	[0.0057-0.0113] unit increase	Affymetrix [16585854] (imputed)	N
675	chr1	11904075	11904076	rs198358	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.22	NR	rs198358-C	0.24827	2E-6		0.00519251	[0.0031-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
675	chr1	11905973	11905974	rs5068	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	MTHFR, NPPB, CLCN6	rs5068-?	NR	9E-35				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11905973	11905974	rs5068	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1p36.22	MTHFR, NPPB, CLCN6	rs5068-?		2E-29				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11906820	11906821	rs12744757	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	intergenic	rs12744757-T	0.059	8E-23		0.695	[0.56-0.83] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
675	chr1	11906820	11906821	rs12744757	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.22	intergenic	rs12744757-T	0.059	2E-10	(EA, initial)	0.596	[0.41-0.78] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
675	chr1	11907170	11907171	rs202102042	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	1p36.22	NPPA	rs202102042-T	4.0E-4	3E-7		3.863	[2.39-5.34] mmHg increase	Affymetrix [NR] (imputed)	N
675	chr1	11907170	11907171	rs202102042	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	1p36.22	NPPA	rs202102042-T	4.0E-4	2E-8		3.1984	[2.08-4.32] mmHg increase	Affymetrix [NR] (imputed)	N
675	chr1	11907647	11907648	rs5063	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1p36.22	NPPA	rs5063-?		4E-9		1.1764705	[1.14-1.27]	Illumina [87827]	N
675	chr1	11913756	11913757	rs198375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p36.22		rs198375-T	0.602397	4E-8		0.02149	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
675	chr1	11913756	11913757	rs198375	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPB	5,368 Icelandic ancestry individuals	NA	1p36.22		rs198375-C	0.3981	4E-21		0.171011	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
675	chr1	11913756	11913757	rs198375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p36.22	NPPB	rs198375-C	NR	3E-12		0.0208355	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
675	chr1	11915466	11915467	rs198379	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	B-type natriuretic peptide levels	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	NPPB	rs198379-C	0.635	4E-52		0.249	[0.22-0.28] Unit increase	Illumina [7358451] (imputed)	N
675	chr1	11916094	11916095	rs549596	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.22	NPPB	rs549596-T	0.57625	2E-6	(NPPB, 3723_1_2)	0.11916671	[0.071-0.168] unit decrease	Illumina [> 1000000] (imputed)	N
675	chr1	11916094	11916095	rs549596	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.22	NPPB	rs549596-T	0.57625	2E-12	(NPPB, 7655_11_3)	0.16299972	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
675	chr1	11916094	11916095	rs549596	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1p36.22	NPPB	rs549596-T	0.59	2E-14		0.19	unit decrease	Illumina [5270624] (imputed)	N
675	chr1	11917627	11917627	rs35207557	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1p36.22	NPPB	rs352075570-T	0.6	3E-25		0.26	unit decrease	Illumina [5270624] (imputed)	N
675	chr1	11918443	11918444	rs61761991	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	N-terminal pro B-type natriuretic peptide levels	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	NPPB	rs61761991-T	0.971	9E-68		0.766	[0.68-0.85] Unit decrease	Illumina [7358451] (imputed)	N
675	chr1	11918443	11918444	rs61761991	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	B-type natriuretic peptide to N-terminal pro B-type natriuretic peptide ratio	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	NPPB	rs61761991-T	0.971	5E-103		1.114	[1.01-1.22] Unit increase	Illumina [7358451] (imputed)	N
675	chr1	11919270	11919271	rs198389	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	NT proBNP plasma levels	400 French ancestry individuals	NA	1p36.22		rs198389-A	NR	3E-7		0.262	[0.15-0.38] pg/mL increase	Illumina [5201092] (imputed)	N
675	chr1	11919270	11919271	rs198389	34734498	Xhaard C	2021-11-03	ESC Heart Fail	Impact of natriuretic peptide polymorphisms on diastolic and metabolic function in a populational cohort: insights from the STANISLAS cohort.	N-terminal prohormone brain natriuretic peptide levels	1,555 French ancestry individuals from 664 families	NA	1p36.22		rs198389-A	NR	2E-14		0.257	unit decrease	Illumina [520773]	N
675	chr1	11919270	11919271	rs198389	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	N-terminal prohormone brain natriuretic peptide levels	21,758 European ancestry individuals	9,173 individuals	1p36.22		rs198389-A	0.6	3E-77		0.2306	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
675	chr1	11919270	11919271	rs198389	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.22	NPPB	rs198389-G	0.413	4E-31	(N-terminal pro-BNP, NPPB.7655.11.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
675	chr1	11919270	11919271	rs198389	26908625	Johansson A	2016-01-21	Hum Mol Genet	Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome.	NT-proBNP levels in acute coronary syndrome	at least 3,691 European ancestry individuals, up to 29 Asian ancestry individuals, 20 African ancestry individuals	at least 5,404 European ancestry individuals, up to 54 Asian ancestry individuals, 33 African ancestry individuals	1p36.22	NPPB	rs198389-G	0.425	1E-15		0.153	[0.12-0.19] ng/L increase	Illumina [10962468] (imputed)	N
675	chr1	11919270	11919271	rs198389	25561047	Musani SK	2015-01-05	Circ Cardiovasc Genet	Genome-wide association analysis of plasma B-type natriuretic peptide in blacks: the Jackson Heart Study.	B-type natriuretic peptide levels	2,790 Black individuals	NA	1p36.22	NPPB	rs198389-G	0.4	1E-9		0.18	[0.12-0.24] unit increase	Affymetrix [2500000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	NPPB	rs3753581-A	0.33	2E-20	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	NPPB	rs3753581-A	0.38	2E-23	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	2E-29	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	1E-32				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	1E-34				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?		4E-31	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	5E-21				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	1E-18	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	3E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11920188	11920189	rs3753581	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	CLCN6, NPPA, NPPB	rs3753581-?	NR	1E-22				Affymetrix, Illumina [18800000] (imputed)	N
675	chr1	11921180	11921181	rs12406089	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.22	NPPB	rs12406089-G	0.6564	2E-17		0.2275	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
675	chr1	11921180	11921181	rs12406089	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	N-terminal pro B-type natriuretic peptide levels	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	1p36.22	NPPB	rs12406089-G	0.709	8E-48	(Conditional)	0.201	[0.17-0.23] Unit increase	Illumina [7358451] (imputed)	N
675	chr1	11922297	11922298	rs6668659	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	1p36.22	NPPB	rs6668659-T	0.65	1E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11923736	11923737	rs12569355	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.22	NR	rs12569355-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
675	chr1	11923736	11923737	rs12569355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.22		rs12569355-?	NR	2E-8				NR [~ 8900000] (imputed)	N
675	chr1	11925299	11925300	rs6676300	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	NPPB	rs6676300-A	0.62	6E-10	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
675	chr1	11927363	11927364	rs12562784	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1p36.22		rs12562784-G	NR	8E-6		4.461959	z score increase	Affymetrix, Illumina [NR] (imputed)	N
676	chr1	11934377	11934378	rs198384	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p36.22	NR	rs198384-A	0.550969	2E-8		0.00666481	[0.0044-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
676	chr1	11934377	11934378	rs198384	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p36.22	NR	rs198384-A	0.550969	5E-7		0.0065036	[0.0041-0.0089] unit increase	Affymetrix [16582614] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	5E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	3E-14				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	1E-12				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs12741980-?		8E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	6E-13				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	3E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	2E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11939592	11939593	rs12741980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs12741980-?	NR	1E-12				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11941935	11941936	rs11588551	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA2013	5,366 Icelandic ancestry individuals	NA	1p36.22		rs11588551-T	0.4075	1E-13		0.142795	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
676	chr1	11941935	11941936	rs11588551	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.22	KIAA2013	rs11588551-T	0.4178125	2E-12	(KIAA2013, 6538_90_3)	0.1780613	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
676	chr1	11948449	11948450	rs566469341	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1p36.22	RP5-934G17.6	rs566469341-T	0.0029	2E-6		0.5923	[0.35-0.83] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
676	chr1	11958722	11958723	rs12085006	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.22	MTHFR	rs12085006-?	0.43	6E-10	(Plasma homocysteine)	0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
676	chr1	11959215	11959216	rs1999594	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Serum folate levels	2,232 Irish ancestry individuals	NA	1p36.22	RNU5E	rs1999594-?	NR	1E-8		0.03981	[0.026-0.054] nmol/L increase	Illumina [758443]	N
676	chr1	11959215	11959216	rs1999594	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Plasma homocysteine levels	2,232 Irish ancestry individuals	NA	1p36.22	RNU5E	rs1999594-?	NR	1E-11		0.02195	[0.016-0.028] ?mol/L decrease	Illumina [758443]	N
676	chr1	11965791	11965792	rs72640287	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	LOC105376742, KIAA2013	rs72640287-T	0.04	6E-21	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	1p36.22	LOC105376742, KIAA2013	rs72640287-T	0.04	3E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	3E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	2E-20				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs72640287-?		5E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	7E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	2E-18				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	7E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11965791	11965792	rs72640287	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p36.22	NPPA, NPPB	rs72640287-?	NR	4E-19				Affymetrix, Illumina [18800000] (imputed)	N
676	chr1	11968198	11968199	rs71647013	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	LOC105376742, KIAA2013	rs71647013-A	0.05	1E-9	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	11973522	11973523	rs34550591	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	1p36.22	NR	rs34550591-?	NR	2E-11		0.09427968	NR unit increase	Affymetrix [464137]	N
676	chr1	11973887	11973888	rs7554547	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1p36.22	NR	rs7554547-A	0.48	5E-7		1.1627907	[NR]	Illumina [803202]	N
676	chr1	11975043	11975043	rs34138554	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1p36.22	KIAA2013	rs34138554-T	0.5781	5E-6		0.0382	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
676	chr1	11978254	11978255	rs71647019	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p36.22	KIAA2013	rs71647019-A	0.05	1E-15	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	11978533	11978534	rs71647020	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	KIAA2013	rs71647020-A	0.05	6E-15	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	11982543	11982544	rs2639453	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Red blood cell folate levels	2,232 Irish ancestry individuals	NA	1p36.22	KIAA2013	rs2639453-?	NR	5E-8		0.03421	[0.022-0.046] nmol/L decrease	Illumina [758443]	N
676	chr1	11982543	11982544	rs2639453	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	1p36.22	KIAA2013	rs2639453-?	NR	2E-7				Illumina [1940243] (imputed)	N
676	chr1	11995175	11995176	rs1208984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs1208984-?	NR	5E-10				NR [~ 8900000] (imputed)	N
676	chr1	11996536	11996537	rs72640295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.22	NR	rs72640295-T	0.02962	2E-8	(HSD17B4)	0.9675	NR unit increase	Illumina [1671387] (imputed)	N
676	chr1	11996536	11996537	rs72640295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.22	NR	rs72640295-T	0.02962	1E-9	(EHHADH)	1.196	NR unit increase	Illumina [1671387] (imputed)	N
676	chr1	12023499	12023500	rs72641011	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p36.22	PLOD1	rs72641011-A	0.04	4E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
676	chr1	12025352	12025353	rs2273291	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	1p36.22	PLOD1	rs2273291-A	0.38	1E-10		1.32	[NR]	Illumina [747089]	N
676	chr1	12026089	12026090	rs6678553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1p36.22		rs6678553-G	0.596477	1E-14		0.0259332	[0.019-0.033] unit decrease	Illumina [13478928] (imputed)	N
676	chr1	12028654	12028655	rs11121845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.22	PLOD1	rs11121845-T	0.4632	2E-38		0.04850045	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
676	chr1	12028654	12028655	rs11121845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p36.22	PLOD1	rs11121845-T	0.4631	1E-25		0.03911354	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
676	chr1	12042260	12042261	rs2236055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.22		rs2236055-G	NR	9E-72		0.0342	[0.03-0.038] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
676	chr1	12042260	12042261	rs2236055	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p36.22		rs2236055-A	0.532	7E-22				Affymetrix [10369434] (imputed)	N
676	chr1	12042260	12042261	rs2236055	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.22		rs2236055-A	0.532	7E-41				Affymetrix [10369434] (imputed)	N
676	chr1	12042442	12042443	rs4846082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.22	MFN2	rs4846082-T	0.467152	5E-101		0.048047967	[0.044-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr1	12042442	12042443	rs4846082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.22	MFN2	rs4846082-T	0.467183	2E-67		0.038967084	[0.035-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr1	12042442	12042443	rs4846082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs4846082-T	0.494314	7E-105				Affymetrix, Illumina [24588908] (imputed)	N
676	chr1	12042442	12042443	rs4846082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.22	NR	rs4846082-T	0.469684	1E-97		0.0388	[0.035-0.042] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
676	chr1	12042754	12042755	rs4240897	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,537 Chinese ancestry controls	3,338 Chinese ancestry cases, 4,849 Chinese ancestry controls	1p36.22	CLCN6, MTHFR, NPPA, NPPB, KIAA2013, PLOD1, MFN2, MIIP, TNFRSF8, TNFRSF1B	rs4240897-?	0.493	1E-11		1.27	[1.20-1.33]	Illumina [691388]	N
676	chr1	12043716	12043717	rs3766744	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1p36.22	NR	rs3766744-A	0.564696	3E-17		0.0179	[0.014-0.022] unit decrease	Affymetrix [23037915] (imputed)	N
676	chr1	12044163	12044164	rs1474868	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	1p36.22	NR	rs1474868-T	0.4722	4E-15		0.0202598	[0.015-0.025] unit decrease	Affymetrix [3505788] (imputed)	N
676	chr1	12046062	12046063	rs2336384	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	1p36.22	MFN2	rs2336384-G	NR	1E-8		2.172	[1.42-2.92] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
676	chr1	12048594	12048595	rs56243319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	1p36.22		rs56243319-T	NR	3E-9		0.0919	[0.062-0.122] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
676	chr1	12053099	12053100	rs2103876	34927100	Stuart PE	2021-11-06	HGG Adv	Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.	Psoriasis	15,967 European ancestry cases, 28,194 European ancestry controls, 2,590 South Asian ancestry cases, 1,720 South Asian ancestry controls	NA	1p36.22	NR	rs2103876-T		1E-9		1.11	[1.07-1.14]	Affymetrix, Illumina, Perlegen [8942692] (imputed)	N
676	chr1	12053099	12053100	rs2103876	34927100	Stuart PE	2021-11-06	HGG Adv	Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.	Psoriasis	15,967 European ancestry cases, 28,194 European ancestry controls	NA	1p36.22	NR	rs2103876-T		1E-7		1.1	[1.06-1.14]	Affymetrix, Illumina, Perlegen [9010555] (imputed)	N
676	chr1	12053263	12053264	rs2878677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p36.22	NR	rs2878677-T	0.41211	4E-13		0.027609	[0.02-0.035] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
677	chr1	12068940	12068941	rs6686734	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p36.22	MFN2	rs6686734-?	NR	1E-6	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
677	chr1	12070291	12070292	rs730123	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Plasma homocysteine levels	2,232 Irish ancestry individuals	NA	1p36.22	MFN2	rs730123-?	NR	7E-9		0.01915	[0.013-0.026] ?mol/L increase	Illumina [758443]	N
677	chr1	12090675	12090676	rs114876986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.22		rs114876986-?	NR	2E-14				NR [~ 8900000] (imputed)	N
677	chr1	12099344	12099345	rs35249183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.09979	2E-17		0.032147918	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
677	chr1	12099344	12099345	rs35249183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.099815	9E-24		0.037727807	[0.03-0.045] unit increase	Affymetrix [93095623] (imputed)	N
677	chr1	12099344	12099345	rs35249183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.22	NR	rs35249183-G	0.0969534	2E-30				Affymetrix, Illumina [19872809] (imputed)	N
677	chr1	12099344	12099345	rs35249183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.22	NR	rs35249183-G	0.099837	1E-32		0.039991	[0.033-0.047] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
677	chr1	12099344	12099345	rs35249183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.0997	1E-12		0.04324882	[0.031-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
677	chr1	12099344	12099345	rs35249183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.0996	5E-13		0.04414371	[0.032-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
677	chr1	12099344	12099345	rs35249183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.0996	1E-10		0.03964729	[0.028-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
677	chr1	12099344	12099345	rs35249183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p36.22	RN7SL649P	rs35249183-G	0.0997	2E-15		0.04849153	[0.037-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
677	chr1	12103635	12103636	rs182645806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.22		rs182645806-T	NR	3E-22		0.0202	[0.016-0.024] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
677	chr1	12105331	12105332	rs12759042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs12759042-?	NR	5E-33				NR [~ 8900000] (imputed)	N
677	chr1	12130050	12130051	rs4491070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1p36.22	NR	rs4491070-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
677	chr1	12142697	12142698	rs11121854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	TNFRSF8	rs11121854-T	0.280075	5E-10		0.015980374	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr1	12144433	12144434	rs1201113	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.22	NR	rs1201113-G	0.8786	1E-8		1.0537407	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
677	chr1	12144433	12144434	rs1201113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.22		rs1201113-?	NR	7E-11				NR [~ 8900000] (imputed)	N
677	chr1	12175657	12175658	rs2230624	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1p36.22	TNFRSF8	rs2230624-A	0.0151154932888042	2E-9		0.16181695	[0.11-0.21] unit decrease	Affymetrix [35186738] (imputed)	N
677	chr1	12175657	12175658	rs2230624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	TNFRSF8	rs2230624-A	0.014666	4E-28		0.10144436	[0.083-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr1	12175657	12175658	rs2230624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.22	TNFRSF8	rs2230624-A	0.014664	1E-21		0.087795	[0.07-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr1	12175657	12175658	rs2230624	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.22	TNFRSF8	rs2230624-G	0.99	2E-9				NR [> 9500000] (imputed)	N
677	chr1	12175657	12175658	rs2230624	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p36.22	TNFRSF8	rs2230624-G	0.985836	4E-12		1.1915305	[1.13389988196823-1.25209012426842]	NR [9572556] (imputed)	N
677	chr1	12175657	12175658	rs2230624	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1p36.22	TNFRSF8, TNFRSF1B, MIR4632, MIIP, MIR6729, MIR7846	rs2230624-G	0.98488	8E-13		1.2183087	[1.15-1.28]	Affymetrix [32463443] (imputed)	N
677	chr1	12175657	12175658	rs2230624	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1p36.22	NR	rs2230624-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
677	chr1	12175657	12175658	rs2230624	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1p36.22	TNFRSF8	rs2230624-G	0.988	4E-8		0.161922	[0.1-0.22] unit increase	Illumina [13520550] (imputed)	N
678	chr1	12243824	12243825	rs76769120	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1p36.22	TNFRSF1B	rs76769120-G	0.91	7E-14		0.42	unit increase	Illumina [5270624] (imputed)	N
678	chr1	12246174	12246175	rs474247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.22	TNFRSF1B	rs474247-T	0.21777	6E-17		0.023184242	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
678	chr1	12246174	12246175	rs474247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.22	TNFRSF1B	rs474247-T	0.217779	9E-18		0.023802869	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
678	chr1	12246174	12246175	rs474247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.22		rs474247-?	NR	8E-22				NR [~ 8900000] (imputed)	N
678	chr1	12247127	12247128	rs5745994	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.22	TNFRSF1B	rs5745994-C	0.96515625	7E-8	(TNFRSF1B, 8368_102_3)	0.3391059	[0.22-0.46] unit increase	Illumina [> 1000000] (imputed)	N
678	chr1	12249567	12249568	rs5746009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.22		rs5746009-?	NR	2E-7				NR [~ 8900000] (imputed)	N
678	chr1	12251340	12251341	rs5746017	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.22	TNFRSF1B	rs5746017-C	0.041	3E-15	(Tumor necrosis factor receptor superfamily member 1B, TNFRSF1B.8368.102.3)	0.48	[0.36-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
678	chr1	12253061	12253062	rs5746026	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	1p36.22		rs5746026-A	0.036	5E-50		0.3268	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
678	chr1	12266590	12266591	rs5746061	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	1p36.22	TNFRSF1B	rs5746061-G	0.23	9E-6	(Combined sex)	0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
679	chr1	12373747	12373748	rs6685273	25896417	Nakada TA	2015-04-17	J Innate Immun	VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.	Cytokine-stimulated IL-6 production	60 European ancestry lymphoblastoid cell lines	NA	1p36.22	VPS13D	rs6685273-T	0.068	4E-7				Illumina [2300000]	N
679	chr1	12373747	12373748	rs6685273	25896417	Nakada TA	2015-04-17	J Innate Immun	VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock.	Cytokine and corticosteroid-stimulated IL-6 production	60 European ancestry lymphoblastoid cell lines	NA	1p36.22	VPS13D	rs6685273-T	0.068	4E-7				Illumina [2300000]	N
680	chr1	12546693	12546694	rs12125606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.22		rs12125606-T	0.24	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
681	chr1	12613421	12613422	rs6690264	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p36.21	VPS13D, DHRS3	rs6690264-A	0.42	4E-15		0.0068	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
681	chr1	12613421	12613422	rs6690264	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p36.21	DHRS3	rs6690264-A	0.42	7E-11		0.00608	[0.0043-0.0079] unit decrease	Affymetrix [at least 8002429] (imputed)	N
681	chr1	12614847	12614848	rs3924048	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	1p36.21	DHRS3	rs3924048-G	0.4	2E-8	(EA)	0.016	[0.010-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
681	chr1	12614847	12614848	rs3924048	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	1p36.21	DHRS3	rs3924048-G	0.4	1E-10		0.016	[0.010-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
681	chr1	12660419	12660420	rs55728759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.21	NR	rs55728759-C	0.337853	6E-15				Affymetrix, Illumina [24653286] (imputed)	N
681	chr1	12660419	12660420	rs55728759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.21	NR	rs55728759-C	0.355143	8E-15		0.01526	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
681	chr1	12660419	12660420	rs55728759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.21	NR	rs55728759-C	0.337442	2E-15				Affymetrix, Illumina [24558453] (imputed)	N
681	chr1	12660419	12660420	rs55728759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.21	NR	rs55728759-C	0.355089	2E-15		0.015661	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
681	chr1	12661178	12661179	rs13376289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.21		rs13376289-T	NR	5E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
681	chr1	12661178	12661179	rs13376289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.21	NR	rs13376289-T	0.160956	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
681	chr1	12661420	12661421	rs12136952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.21		rs12136952-C	NR	3E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
681	chr1	12661420	12661421	rs12136952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.21	DHRS3	rs12136952-C	0.328997	2E-10		0.014879513	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
681	chr1	12661420	12661421	rs12136952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.21	DHRS3	rs12136952-C	0.329011	3E-12		0.016383281	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
681	chr1	12661420	12661421	rs12136952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.21	NR	rs12136952-C	0.324811	6E-12		0.013713	[0.0098-0.0176] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
681	chr1	12661420	12661421	rs12136952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.21		rs12136952-?	NR	2E-13				NR [~ 8900000] (imputed)	N
681	chr1	12663328	12663329	rs61776840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.21		rs61776840-G	NR	5E-10		0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
681	chr1	12663328	12663329	rs61776840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.21	DHRS3	rs61776840-G	0.171441	4E-13		0.021296738	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr1	12741239	12741240	rs2489260	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.21	AADACL4	rs2489260-A	0.145	8E-6	(Sitting height )	0.04	[NR] cm increase	Illumina [899892]	N
682	chr1	12769238	12769239	rs3010872	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	1p36.21	intergenic	rs3010872-C	0.295	4E-6	(women)			Illumina [622468]	N
682	chr1	12815537	12815538	rs114686607	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p36.21	C1orf158	rs114686607-C	0.0100277737416432	6E-6	(F_Streptococcaceae_HB)	1.5114	[0.85-2.17] unit decrease	Illumina [7711310] (imputed)	N
683	chr1	12866801	12866802	rs116788095	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p36.21	PRAMEF1	rs116788095-A	0.9774	5E-6		0.1179	[0.067-0.168] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
683	chr1	12901853	12901854	rs56704134	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1p36.21	NR	rs56704134-?	NR	2E-16		8.214	NR z score decrease	Illumina [at least 830937] (imputed)	N
683	chr1	12907448	12907449	rs78163065	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	1p36.21	NSM	rs78163065-C	0.8801	6E-6		1.3949	[1.2508-1.5390]	Illumina [8567708] (imputed)	N
690	chr1	13802324	13802325	rs3013105	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.21		rs3013105-T	0.6039	4E-8		0.11320045	[0.069-0.158] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
690	chr1	13802324	13802325	rs3013105	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.21		rs3013105-T	0.604	2E-11		0.0932696	[0.066-0.121] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
690	chr1	13802324	13802325	rs3013105	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.21	LRRC38, PRDM2	rs3013105-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
690	chr1	13817524	13817525	rs148969006	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p36.21	NR	rs148969006-T	0.01	2E-6		2.5	[2.13-2.87]	Illumina [8468885] (imputed)	N
690	chr1	13853889	13853894	rs1208944369	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.21	NR	rs1208944369-T	0.01394	3E-8	(HBD)	4.364	NR unit increase	Illumina [1671387] (imputed)	N
691	chr1	13906526	13906527	rs2885135	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	1p36.21	NR	rs2885135-?		9E-6				Affymetrix, Illumina [1348798]	N
691	chr1	13921933	13921934	rs2885134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	1p36.21		rs2885134-G	NR	3E-9		0.2128	[0.14-0.28] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
691	chr1	13942072	13942073	rs2487628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.21		rs2487628-?	NR	4E-12				NR [~ 8900000] (imputed)	N
691	chr1	13944236	13944236	rs3060293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.21		rs3060293-CTT	NR	8E-9		0.0291	[0.019-0.039] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
691	chr1	13966751	13966752	rs557224575	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1p36.21		rs557224575-G	NR	6E-6		0.28849		Affymetrix, Illumina [62056310] (imputed)	N
692	chr1	14121891	14121892	rs1203638	33125391	Hassler S	2020-10-30	PLoS Med	Clinicogenomic factors of biotherapy immunogenicity in autoimmune disease: A prospective multicohort study of the ABIRISK consortium.	Anti-drug antibodies in autoimmune disease (time to event)	457 European ancestry individuals	NA	1p36.21	PRDM2	rs1203638-?	NR	6E-7				Illumina [351824]	N
692	chr1	14137574	14137575	rs2473234	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	1p36.21		rs2473234-A	NR	7E-7		0.00781036	[0.0047-0.0109] years increase	NR [7400000] (imputed)	N
692	chr1	14137574	14137575	rs2473234	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1p36.21		rs2473234-A	NR	5E-10		0.028746525	[0.02-0.038] years increase	NR [7400000] (imputed)	N
692	chr1	14148406	14148407	rs61775135	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	1p36.21	PRDM2	rs61775135-C	0.5900000000000001	4E-13		3.125	[2.33-4.35]	Affymetrix [508192]	N
692	chr1	14150739	14150740	rs2697963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p36.21		rs2697963-?	NR	2E-18				NR [~ 8900000] (imputed)	N
693	chr1	14171621	14171622	rs12028630	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		1p36.21	NR	rs12028630-G	0.231693	3E-6		1.07717	[1.04298-1.11247]	Affymetrix [16499239] (imputed)	N
693	chr1	14192675	14192676	rs7542939	28542097	Wells QS	2017-05-24	Pharmacogenet Genomics	Genome-wide association and pathway analysis of left ventricular function after anthracycline exposure in adults.	Left ventricular function change in anthracycline treatment	337 European ancestry individuals, 30 African American individuals, 1 Asian individual, 4 Latino individuals, 13 individuals	152 European ancestry individuals, 23 African American individuals, 3 Asian individuals, 3 individuals	1p36.21	PRDM2	rs7542939-A	NR	7E-7		4.97	[2.81-7.13] unit decrease (discovery sample)	Illumina [4429986] (imputed)	N
693	chr1	14240291	14240292	rs72639058	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	1p36.21	PRDM2, KAZN	rs72639058-T	0.17	5E-7		0.47	[0.29-0.65] unit decrease	Illumina [8411492] (imputed)	N
693	chr1	14278211	14278212	rs12745317	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KAZN	rs12745317-?	NR	3E-8	(female)	1.80179	[NR] unit decrease	Affymetrix [NR] (imputed)	N
694	chr1	14288118	14288119	rs12044299	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	1p36.21	NR	rs12044299-?	NR	4E-6		2.1362956	NR	Affymetrix, Illumina [7062950] (imputed)	N
694	chr1	14320501	14320502	rs6681501	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	1p36.21	intergenic	rs6681501-?	NR	7E-6				Illumina [659222]	N
694	chr1	14372399	14372400	rs16853497	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.21	NR	rs16853497-?	NR	2E-7				Affymetrix [NR]	N
694	chr1	14395818	14395819	rs76347430	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	1p36.21	NR	rs76347430-G	0.020000000000000018	1E-6		2.0	[1.52-2.63]	NR [8482392] (imputed)	N
694	chr1	14399145	14399146	rs187163948	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	1p36.21	KAZN	rs187163948-A	NR	4E-8	(TAG(53:3;0))	0.9496	[0.61-1.29] unit increase	Illumina [~ 9300000] (imputed)	N
694	chr1	14409543	14409544	rs55889542	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1p36.21	KAZN	rs55889542-?	NR	5E-6		3.85		Illumina [6778521] (imputed)	N
695	chr1	14463450	14463451	rs78609359	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p36.21	KAZN	rs78609359-T	0.0099	2E-6		0.1926	[0.11-0.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
695	chr1	14463450	14463451	rs78609359	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p36.21	KAZN	rs78609359-T	0.01	7E-6		0.18	[0.1-0.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
695	chr1	14477358	14477359	rs61777763	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	1p36.21	RNU6-1265P, RP11-344F13.1	rs61777763-T	0.062	8E-6		0.0935	[0.053-0.134] unit increase	NR [4841651] (imputed)	N
695	chr1	14507738	14507739	rs10754914	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.21		rs10754914-A	0.46	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
695	chr1	14507830	14507831	rs12065331	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.21		rs12065331-T	0.3068	2E-10		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
695	chr1	14507830	14507831	rs12065331	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.21	PRDM2, KAZN	rs12065331-C	0.6875	2E-11		1.0247		Affymetrix [11880941] (imputed)	N
695	chr1	14525107	14525108	rs11578757	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p36.21	NR	rs11578757-G	0.73	3E-6		1.04	[-1.0572-3.1372]	Affymetrix [at least 143006] (imputed)	N
696	chr1	14581156	14581157	rs535993527	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	1p36.21	KAZN	rs535993527-A	0.9985	5E-6		0.8261	[0.47-1.18] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
696	chr1	14605333	14605334	rs12136800	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	1p36.21	PRDM2, KAZN	rs12136800-T	0.01	2E-7		0.3532	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
696	chr1	14665130	14665131	rs11803759	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	1p36.21	Intergenic	rs11803759-?		6E-6		1.851	[NR]	Affymetrix [492217] (imputed)	N
697	chr1	14702353	14702354	rs6429657	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	1p36.21	NR	rs6429657-A	0.96	2E-6		4.79	[NR] z score decrease	Illumina [9009554] (imputed)	N
697	chr1	14730799	14730800	rs78025940	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (reproductive subtype)	123 European ancestry cases, 2,964 European ancestry controls	84 European ancestry cases, 1,134 European ancestry controls	1p36.21	KAZN, PRDM2	rs78025940-A	0.02	2E-10		4.75	[2.82-7.98]	Illumina [NR] (imputed)	N
697	chr1	14744788	14744789	rs12130603	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	1p36.21	NR	rs12130603-C	0.9	3E-6	(AA)	7.11	[4.29-9.93] bpm decrease	Illumina [at least 1100000] (imputed)	N
697	chr1	14763229	14763230	rs10927436	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	1p36.21	NR	rs10927436-?	NR	1E-8		0.1324	NR	Illumina [802276]	N
697	chr1	14787684	14787685	rs16850288	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	1p36.21	NR	rs16850288-C	NR	4E-6		0.211	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
697	chr1	14792534	14792535	rs2480054	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	1p36.21	NR	rs2480054-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
697	chr1	14805992	14805993	rs11584308	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	1p36.21	NR	rs11584308-C	0.8	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
698	chr1	14818029	14818030	rs9429236	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	1p36.21	PRDM2, KAZN	rs9429236-C	0.8909	3E-6		0.1989	[0.12-0.28] unit increase	NR [NR] (imputed)	N
698	chr1	14818029	14818030	rs9429236	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	1p36.21	PRDM2, KAZN	rs9429236-C	0.8909	3E-6		0.1989	[0.12-0.28] unit increase	NR [NR] (imputed)	N
698	chr1	14837478	14837479	rs78112219	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1p36.21		rs78112219-C	0.862983	5E-6		0.0170195	[0.0097-0.0243] unit decrease	Illumina [13900000] (imputed)	N
698	chr1	14933909	14933910	rs112716054	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.21	NR	rs112716054-T	0.0122	5E-9	(CROT)	0.007284	NR unit increase	Illumina [1671387] (imputed)	N
699	chr1	14949883	14949884	rs4661294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.21		rs4661294-G	0.49	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
700	chr1	15120544	15120545	rs77944739	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p36.21	NR	rs77944739-?	NR	4E-8				Illumina [7760689] (imputed)	N
700	chr1	15133063	15133064	rs59825600	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	1p36.21	KAZN	rs59825600-A	0.0905	4E-8		0.0751	[0.048-0.102] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
700	chr1	15133667	15133668	rs804136	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	1p36.21	NR	rs804136-C	0.22	8E-6	(AA)	4.06	[2.34-5.78] bpm increase	Illumina [at least 1100000] (imputed)	N
700	chr1	15204244	15204245	rs2807544	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	1p36.21	NR	rs2807544-G		3E-6		0.1175	[0.068-0.167] SD units decrease	NR [10700000] (imputed)	N
701	chr1	15286355	15286356	rs12068879	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to antidepressants and depression	1,311 European ancestry non-responder cases, 192,178 European ancestry healthy controls	NA	1p36.21	KAZN	rs12068879-?		1E-6		2.221	[1.667-2.958]	Illumina [~ 12000000] (imputed)	N
701	chr1	15295905	15295906	rs880923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.21		rs880923-?	NR	9E-9				NR [~ 8900000] (imputed)	N
701	chr1	15311593	15311594	rs12044405	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	1p36.21		rs12044405-?	NR	3E-6		0.443	unit increase	Illumina [NR] (imputed)	N
702	chr1	15339959	15339960	rs6429703	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	1p36.21	RP1-21O18.1	rs6429703-T	0.078	8E-6	(Allelic model)	2.942	[1.802-4.804]	Illumina [733202]	N
702	chr1	15347639	15347640	rs6667220	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	1p36.21	RP1-21O18.1	rs6667220-G	0.26	8E-6	(IL6)			Illumina [588352]	N
702	chr1	15359966	15359967	rs4520412	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	1p36.21	KAZN	rs4520412-?	NR	9E-7	(recessive model)		NR	Illumina [445723]	N
702	chr1	15418072	15418073	rs12072230	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	1p36.21	KAZN	rs12072230-?	NR	7E-6		1.277104	[1.148286-1.420374]	Illumina [at least 4756722] (imputed)	N
702	chr1	15429232	15429233	rs491203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Acute ischemic stroke x type 2 diabetes interaction	11,796 European ancestry cases, 178,481 European ancestry controls	NA	1p36.21	TMEM51	rs491203-A	0.057	8E-9				Affymetrix [at least 723305] (imputed)	N
702	chr1	15434258	15434259	rs518152	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	1p36.21	NR	rs518152-G	NR	3E-7	(EA, male)	1.1627907	NR	Affymetrix, Illumina [~ 1175791] (imputed)	N
702	chr1	15436223	15436227	rs148757321	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	1p36.21	NR	rs148757321-CTGTG	NR	4E-8	(EA, male)	1.18	[1.11-1.26]	Affymetrix, Illumina [~ 1175791] (imputed)	N
703	chr1	15503650	15503651	rs1883758	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.21	NR	rs1883758-?	NR	1E-10				Affymetrix [NR]	N
703	chr1	15510810	15510811	rs2006023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.21	NR	rs2006023-G	NR	4E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
703	chr1	15513131	15513132	rs12407705	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	1p36.21		rs12407705-G	NR	3E-6		0.14204007	[0.082-0.202] increase	Illumina [6334277] (imputed)	N
703	chr1	15538533	15538534	rs10927723	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p36.21	CASP9	rs10927723-G	0.341	3E-6		0.152	[-0.04792-0.35192] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
703	chr1	15548635	15548636	rs10737909	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	1p36.21	intergenic	rs10737909-?	0.54	2E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
704	chr1	15599020	15599021	rs6679905	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	1p36.21	FHAD1	rs6679905-T	0.04	3E-6	(right leg)	0.6	[0.35-0.85] g/cm2 decrease	Illumina [> 1100000]	N
704	chr1	15653871	15653872	rs10127456	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	1p36.21	FHAD1	rs10127456-T	0.0137	1E-6		16.0	[NR]	Affymetrix [559609]	N
704	chr1	15706070	15706071	rs3001999	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.21	CELA2A	rs3001999-T	0.8246875	4E-6	(CELA2A, 7140_1_3)	0.14907013	[0.086-0.212] unit increase	Illumina [> 1000000] (imputed)	N
705	chr1	15737141	15737142	rs79280654	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	EFHD2, RP3-467K16.4, FHAD1, CELA2A	rs79280654-?		6E-6		1.5673981	[1.30-1.90]	Illumina [9389922] (imputed)	N
705	chr1	15750216	15750217	rs2473355	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	EFHD2, CTRC, FHAD1, CELA2A, CELA2B	rs2473355-?		1E-7		1.2678	[1.17-1.38]	Illumina [9389922] (imputed)	N
705	chr1	15755675	15755676	rs6695499	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	EFHD2, CTRC, CELA2A, FHAD1, CELA2B	rs6695499-?		2E-7		1.3255	[1.20-1.47]	Illumina [9389922] (imputed)	N
705	chr1	15763339	15763340	rs6693417	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CTRC, EFHD2, CELA2A, CELA2B, FHAD1	rs6693417-?		8E-10		1.3197	[1.21-1.43]	Illumina [9389922] (imputed)	N
705	chr1	15770101	15770102	rs545634	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CTRC, CELA2A, EFHD2, CELA2B, FHAD1, CASP9	rs545634-?		3E-22		1.834526	[1.64-2.00]	Illumina [9389922] (imputed)	N
705	chr1	15782127	15782128	rs565421	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CELA2A, CTRC, CELA2B, EFHD2, CASP9	rs565421-?		3E-6		1.2537	[1.15-1.37]	Illumina [9389922] (imputed)	N
705	chr1	15782343	15782344	rs6702946	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CELA2A, CTRC, CELA2B, EFHD2, CASP9	rs6702946-?		6E-7		1.3387	[1.20-1.49]	Illumina [9389922] (imputed)	N
705	chr1	15782519	15782520	rs12562037	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CELA2B, EFHD2, CASP9, CELA2A, CTRC	rs12562037-?		1E-16		1.6326531	[1.47-1.80]	Illumina [9389922] (imputed)	N
705	chr1	15783295	15783296	rs144878061	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CELA2A, CTRC, CELA2B, EFHD2, CASP9	rs144878061-?		1E-11		1.8480872	[1.56-2.20]	Illumina [9389922] (imputed)	N
705	chr1	15792425	15792426	rs2901964	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p36.21	ELA2A	rs2901964-?	0.37	5E-6		5.26	[NR]	Affymetrix [512497]	N
705	chr1	15793912	15793913	rs1042010	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.21	CELA2A	rs1042010-A	0.189	4E-7	(EA, initial)	0.498	[0.3-0.69] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
705	chr1	15793912	15793913	rs1042010	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.21	CELA2A	rs1042010-A	0.189	3E-13		0.412	[0.3-0.52] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
705	chr1	15795379	15795380	rs72865183	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.21	CELA2A	rs72865183-T	0.2381	1E-8		0.2245	[0.15-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
705	chr1	15798196	15798197	rs3820068	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	1p36.21	CELA2A	rs3820068-A	0.81	1E-12		0.425	[0.31-0.54] unit increase	Affymetrix [~ 9800000] (imputed)	N
705	chr1	15798196	15798197	rs3820068	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.21	CELA2A	rs3820068-A		2E-7		0.255	unit increase	Affymetrix [at least 2696785] (imputed)	N
705	chr1	15798196	15798197	rs3820068	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.21	CELA2A	rs3820068-A		1E-9		0.199	unit increase	Affymetrix [at least 2696785] (imputed)	N
705	chr1	15808766	15808767	rs3820071	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p36.21	CELA2B	rs3820071-G	0.741	9E-10		0.0123	[0.0084-0.0162] unit increase	Illumina [246328]	N
705	chr1	15808871	15808872	rs3766160	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.21	NA	rs3766160-A	0.2272	5E-9		0.0107	[0.0072-0.0142] unit decrease	NR [~ 27400000] (imputed)	N
705	chr1	15808871	15808872	rs3766160	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	297 European ancestry cases, 226 Hispanic cases, 623 European ancestry controls, 633 Hispanic controls	1,946 European ancestry cases, 471 European ancestry controls	1p36.21	CELA2B	rs3766160-A	0.74	1E-6		1.0869565	[NR]	Illumina [NR]	N
705	chr1	15809140	15809141	rs34279773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p36.21	NR	rs34279773-A	NR	4E-9		0.0397	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
705	chr1	15814185	15814186	rs6667862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.21	CELA2B	rs6667862-T	0.527518	5E-10		0.013770585	[0.0094-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
705	chr1	15816768	15816772	rs142927912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.21		rs142927912-C	NR	1E-18		0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
705	chr1	15817089	15817090	rs12045879	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p36.21	CELA2B	rs12045879-C	0.686864	5E-11		0.00988708	[0.0069-0.0128] unit increase	Affymetrix [12370749]	N
705	chr1	15824139	15824139	rs530650774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p36.21		rs530650774-G,rs530650774-G	0.66059	9E-9		0.0215226	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
705	chr1	15824139	15824139	rs530650774	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p36.21		rs530650774-G,rs530650774-G	0.66059	9E-9		0.0215226	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
705	chr1	15828703	15828704	rs4646068	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p36.21	CASP9	rs4646068-T	0.692	8E-9		0.02366	[0.016-0.032] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
705	chr1	15832280	15832281	rs1800615	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	1p36.21	CASP9	rs1800615-T	0.3	2E-9	(EA)	0.0058	[0.004-0.0076] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
705	chr1	15835220	15835223	rs148791232	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p36.21	CASP9	rs148791232-TTTC	0.761306	7E-50	(4-guanidinobutanoate)	0.38	[0.33-0.43] unit increase	Illumina [13039987] (imputed)	N
705	chr1	15839111	15839112	rs4646022	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional multivitamin use interaction (2df)	661 European ancestry exposed trios, 328 European ancestry unexposed trios, 293 Asian ancestry exposed trios, 805 Asian ancestry unexposed trios, 260 Latin American exposed trios, 140 Latin American unexposed trios	NA	1p36.21	CASP9	rs4646022-A	NR	3E-7				Illumina [up to 6762077] (imputed)	N
705	chr1	15839111	15839112	rs4646022	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional multivitamin use interaction (1df)	661 European ancestry exposed trios, 328 European ancestry unexposed trios, 293 Asian ancestry exposed trios, 805 Asian ancestry unexposed trios, 260 Latin American exposed trios, 140 Latin American unexposed trios	NA	1p36.21	CASP9	rs4646022-A	NR	9E-7		1.807	[1.427-2.288]	Illumina [up to 6762077] (imputed)	N
705	chr1	15849002	15849003	rs4645995	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	CASP9, DNAJC16, CELA2B, AGMAT	rs4645995-?		6E-9		1.5800284	[1.37-1.80]	Illumina [9389922] (imputed)	N
705	chr1	15850612	15850613	rs1052571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.21		rs1052571-?	NR	2E-12				NR [~ 8900000] (imputed)	N
705	chr1	15855122	15855123	rs7546668	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1p36.21	CASP9	rs7546668-C	NR	1E-9		0.0063	[0.0043-0.0083] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
705	chr1	15858586	15858587	rs17415991	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p36.21	DNAJC16	rs17415991-A	0.976802	2E-10		0.0108285	[0.0075-0.0142] unit increase	Affymetrix [13995440] (imputed)	N
706	chr1	15869898	15869899	rs12124078	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	1p36.21	CASP9	rs12124078-A	NR	5E-9		0.0058	[0.0038-0.0078] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
706	chr1	15873385	15873386	rs7515244	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p36.21	NR	rs7515244-G	NR	1E-19		0.0232	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
706	chr1	15873385	15873386	rs7515244	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.21	NR	rs7515244-G	NR	8E-15		0.0198	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
706	chr1	15873385	15873386	rs7515244	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p36.21	NR	rs7515244-G	NR	2E-14		0.0196	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
706	chr1	15873385	15873386	rs7515244	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.21	NR	rs7515244-G	NR	3E-16		0.0209	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
706	chr1	15875913	15875914	rs3980014	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p36.21	CASP9	rs3980014-C	0.43	1E-44	(4-guanidinobutanoate)	0.43	[0.37-0.49] unit increase	Illumina [7750367] (imputed)	N
706	chr1	15876757	15876758	rs10803392	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p36.21	NR	rs10803392-T	0.31	9E-26		0.0207	[0.017-0.025] unit decrease	NR [NR]	N
706	chr1	15889210	15889211	rs139928095	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	1p36.21	DNAJC16	rs139928095-?	NR	4E-6		9.07	[3.57-23.03]	Illumina [8600000] (imputed)	N
706	chr1	15897509	15897509	rs34618354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p36.21		rs34618354-CA	NR	4E-22		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
706	chr1	15899479	15899480	rs141398135	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	AGMAT, DNAJC16, CHCHD2P6, DI2, CASP9	rs141398135-?		3E-6		1.5089784	[1.28-1.80]	Illumina [9389922] (imputed)	N
706	chr1	15899752	15899752	rs571122175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.21	AGMAT	rs571122175-CA	0.299488	7E-9		0.014257553	[0.0094-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
706	chr1	15908241	15908242	rs6664388	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p36.21	DDI2, AGMAT, PLEKHM2, CELA2B	rs6664388-C	0.5773	4E-16		8.153	NR z score increase	Illumina [26237160] (imputed)	N
706	chr1	15908241	15908242	rs6664388	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p36.21	CASP9	rs6664388-T	0.407	3E-10		0.408	[0.21-0.61] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
706	chr1	15909479	15909480	rs10803394	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p36.21	AGMAT	rs10803394-C	0.3727	6E-10		0.02	[0.014-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
706	chr1	15909479	15909480	rs10803394	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1p36.21	NR	rs10803394-C	0.3995	5E-6	(men)	0.0234	[0.013-0.033] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
706	chr1	15911946	15911947	rs45619934	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p36.21	CASP9	rs45619934-?	NR	2E-10				Affymetrix, Illumina [at least 5248638] (imputed)	N
706	chr1	15912986	15912987	rs10159261	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p36.21	AGMAT	rs10159261-T	0.3599	1E-27		0.0034	[0.0028-0.004] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
706	chr1	15913120	15913121	rs10159271	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p36.21	AGMAT, DDI2	rs10159271-G	0.46881	4E-77	(4-guanidinobutanoate)	0.416	[0.37-0.46] unit increase	Illumina [13039987] (imputed)	N
706	chr1	15914331	15914332	rs6666886	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p36.21	CASP9	rs6666886-G	0.36	6E-31	(beta-guanidinopropanoate)	1.013	[0.84-1.19] unit decrease	Illumina [7750367] (imputed)	N
706	chr1	15914544	15914545	rs6667182	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p36.21	AGMAT	rs6667182-T	0.3167	6E-24		0.0043	[0.0035-0.0051] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
706	chr1	15915156	15915157	rs59948050	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1p36.21	NR	rs59948050-?	NR	7E-6				Illumina [7427422] (imputed)	N
706	chr1	15916733	15916734	rs77576965	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p36.21	NR	rs77576965-T	0.2727	2E-8		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
706	chr1	15944931	15944932	rs77808099	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	DDI2, RP4-680D5.4, CHCHD2P6, DNAJC16, AGMAT, RSC1A1	rs77808099-?		3E-8		1.631055	[1.39-1.90]	Illumina [9389922] (imputed)	N
706	chr1	15966712	15966713	rs17448682	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.21		rs17448682-T	0.2315	4E-13		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
706	chr1	15966712	15966713	rs17448682	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.21	DDI2	rs17448682-T	0.2339	3E-16		1.0326		Affymetrix [11880941] (imputed)	N
706	chr1	15966712	15966713	rs17448682	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.21	DDI2	rs17448682-T	0.2339	3E-16		1.0354125		Affymetrix [11880941] (imputed)	N
706	chr1	15966712	15966713	rs17448682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p36.21		rs17448682-?	NR	3E-8				NR [~ 8900000] (imputed)	N
706	chr1	15973744	15973745	rs78873257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.21		rs78873257-?	NR	8E-15				NR [~ 8900000] (imputed)	N
706	chr1	15975986	15975987	rs2104038	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.21	DDI2	rs2104038-G	0.6819	2E-10		0.1727	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
707	chr1	15999345	15999345	rs35862921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p36.21		rs35862921-AC	NR	8E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
707	chr1	16006603	16006604	rs7512308	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.21		rs7512308-A	0.24	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
707	chr1	16047072	16047073	rs34045253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p36.21		rs34045253-A	NR	2E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
707	chr1	16050469	16050470	rs12746673	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.21	NR	rs12746673-C	0.2076	3E-10		0.0308	[0.021-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
707	chr1	16069927	16069928	rs74054849	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	RP11-169K16.4, TMEM82, SLC25A34, PLEKHM2, FBLIM1	rs74054849-?		6E-6		1.3950893	[1.22-1.60]	Illumina [9389922] (imputed)	N
707	chr1	16071009	16071010	rs59905655	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.21	TMEM82	rs59905655-A	0.043	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
707	chr1	16075905	16075906	rs10927848	27911795	Schumann G	2016-11-28	Proc Natl Acad Sci U S A	KLB is associated with alcohol drinking, and its gene product ?-Klotho is necessary for FGF21 regulation of alcohol preference.	Alcohol consumption (heavy vs. light/non-drinkers)	up to 74,711 European ancestry heavy and light/non-drinker individuals	up to 31,021 European ancestry heavy and light/non-drinker individuals	1p36.21	TMEM82	rs10927848-A	NR	2E-7		0.0343	[0.021-0.047] unit decrease (initial cohort)	Affymetrix, Illumina, Perlegen [at least 316407] (imputed)	N
707	chr1	16080170	16080171	rs12725198	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	1p36.21	FBLIM1	rs12725198-A	NR	3E-6	(Dichotomous variable)	1.85	[1.43-2.39]	Affymetrix, Illumina [~ 2500000] (imputed)	N
707	chr1	16082975	16082976	rs35609485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.21	NR	rs35609485-T	NR	4E-11		0.0303	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
707	chr1	16087259	16087260	rs938295	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.21	FBLIM1	rs938295-C	0.837683	3E-18		0.0220522	[0.017-0.027] unit decrease	NR [13737936] (imputed)	N
707	chr1	16087259	16087260	rs938295	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.21		rs938295-?	NR	6E-25		0.029387	[0.024-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
707	chr1	16087259	16087260	rs938295	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	1p36.21	FBLIM1	rs938295-C	NR	2E-8	(Unclassified Enterobacteriaceae)	0.49	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
707	chr1	16097236	16097237	rs10803398	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	FBLIM1, TMEM82, SLC25A34, PLEKHM2	rs10803398-?		2E-6		1.2933	[1.17-1.43]	Illumina [9389922] (imputed)	N
707	chr1	16101978	16101979	rs35495014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.21		rs35495014-?	NR	9E-12				NR [~ 8900000] (imputed)	N
707	chr1	16118067	16118068	rs148933117	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p36.21	RP11-169K16.6, FBLIM1, TMEM82, SLC25A34	rs148933117-?		7E-7		1.584535	[1.33-1.90]	Illumina [9389922] (imputed)	N
708	chr1	16126025	16126026	rs76240114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.21	NR	rs76240114-C	NR	3E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
708	chr1	16126025	16126026	rs76240114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.21	NR	rs76240114-C	NR	5E-10		0.0197	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
708	chr1	16126025	16126026	rs76240114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.21	NR	rs76240114-C	NR	9E-10		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
708	chr1	16133395	16133396	rs12738340	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.21	UQCRHL	rs12738340-C	0.1021	4E-12		1.09	NR	Affymetrix [9154080] (imputed)	N
708	chr1	16188680	16188681	rs6701290	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.21		rs6701290-?	NR	4E-31		0.0386526	[0.032-0.045] unit increase	Affymetrix [20259828] (imputed)	N
708	chr1	16188680	16188681	rs6701290	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.21	SPEN	rs6701290-G	0.10762	3E-7	(women)	0.0382322	[0.024-0.053] unit increase	NR [17166351] (imputed)	N
708	chr1	16188680	16188681	rs6701290	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.21	SPEN	rs6701290-G	0.107536	2E-14		0.0425317	[0.032-0.053] unit increase	NR [17166351] (imputed)	N
708	chr1	16188680	16188681	rs6701290	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.21	SPEN	rs6701290-G	0.10744	5E-9	(men)	0.0476853	[0.032-0.064] unit increase	NR [17166351] (imputed)	N
709	chr1	16256006	16256007	rs848209	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p36.13	SPEN	rs848209-T		3E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
709	chr1	16271179	16271180	rs848216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.13		rs848216-?	NR	2E-31				NR [~ 8900000] (imputed)	N
709	chr1	16271179	16271180	rs848216	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.13		rs848216-?	NR	3E-31		0.0387617	[0.032-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
709	chr1	16274768	16274769	rs698891	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.13	ZBTB17	rs698891-C	0.894679	5E-24		0.0305809	[0.025-0.037] unit decrease	NR [13737936] (imputed)	N
709	chr1	16277081	16277082	rs848188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.13		rs848188-?	NR	2E-20				NR [~ 8900000] (imputed)	N
709	chr1	16291469	16291470	rs3979178	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	1p36.13	NR	rs3979178-G	0.728026	8E-6		0.065	[0.038-0.092] unit decrease	NR [9260588] (imputed)	N
709	chr1	16299311	16299312	rs10927875	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	1p36.13	ZBTB17	rs10927875-C	0.6729	8E-25		1.1383014	1.11-1.17	Affymetrix, Illumina [up to 7736182] (imputed)	N
709	chr1	16299311	16299312	rs10927875	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	1p36.13	ZBTB17	rs10927875-C	0.6729	6E-18			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
709	chr1	16299311	16299312	rs10927875	21459883	Villard E	2011-04-01	Eur Heart J	A genome-wide association study identifies two loci associated with heart failure due to dilated cardiomyopathy.	Idiopathic dilated cardiomyopathy	1,179 European ancestry cases, 1,108 European ancestry controls	1,165 European ancestry cases, 1,302 European ancestry controls	1p36.13	ZBTB17	rs10927875-?	NR	1E-9		1.32	[1.19-1.43]	Illumina [517382]	N
709	chr1	16308446	16308447	rs848309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.13		rs848309-?	NR	5E-12				NR [~ 8900000] (imputed)	N
709	chr1	16312137	16312138	rs1763632	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p36.13	CASP9	rs1763632-T	0.203	2E-7		0.157	[-0.0782-0.3922] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
709	chr1	16316118	16316119	rs848302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1p36.13		rs848302-A	0.690054	2E-11		0.020726	[0.015-0.027] unit decrease	Illumina [13478778] (imputed)	N
709	chr1	16316118	16316119	rs848302	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	1p36.13	ZBTB17, C1orf64	rs848302-?	NR	1E-12		0.02881	[0.021-0.037] unit increase novel	Illumina [6108953] (imputed)	N
709	chr1	16338924	16338925	rs1763605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs1763605-G	NR	2E-21		0.024	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
709	chr1	16339312	16339313	rs10927886	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	1p36.13	HSPB7	rs10927886-G	0.4148	7E-13		1.2767273	1.18-1.38	Illumina [6530233] (imputed)	N
709	chr1	16339312	16339313	rs10927886	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	1p36.13	HSPB7	rs10927886-G	0.4148	2E-21		1.2707407	1.21-1.34	Illumina [6530233] (imputed)	N
709	chr1	16339312	16339313	rs10927886	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	1p36.13	HSPB7	rs10927886-C	0.603	6E-6		0.018	[0.01-0.026] unit increase	Affymetrix [~ 10446505] (imputed)	N
709	chr1	16339771	16339772	rs1763604	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.13	C1orf64, HSPB7, CLCNKA	rs1763604-C	0.406551	5E-20	(-20 ms)	0.0509122	[0.04-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
709	chr1	16339771	16339772	rs1763604	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.13	C1orf64, HSPB7, CLCNKA	rs1763604-C	0.406551	3E-13	(-16 ms)	0.0407765	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
709	chr1	16339771	16339772	rs1763604	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.13	C1orf64, HSPB7, CLCNKA	rs1763604-C	0.406551	1E-17	(-18 ms)	0.0476967	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
709	chr1	16339771	16339772	rs1763604	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	1p36.13	HSPB7	rs1763604-C	0.42085	7E-9		0.0372	[0.025-0.05] unit decrease	Illumina [NR]	N
709	chr1	16340878	16340879	rs1048302	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	1p36.13	HSPB7	rs1048302-T	0.326029	2E-13		0.291246	[0.21-0.37] unit increase	Affymetrix [8590397] (imputed)	N
709	chr1	16340878	16340879	rs1048302	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	1p36.13	HSPB7	rs1048302-T	0.325	3E-17		0.277	[0.21-0.34] unit increase	Affymetrix [8590397] (imputed)	N
709	chr1	16341648	16341649	rs1048238	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.13	HSPB7	rs1048238-T	0.571	8E-7	(EA, initial)	0.366	[0.22-0.51] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
709	chr1	16341648	16341649	rs1048238	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p36.13	HSPB7	rs1048238-T	0.567	7E-12		0.347	[0.25-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
709	chr1	16344493	16344494	rs1572381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs1572381-?	NR	1E-9				NR [~ 8900000] (imputed)	N
709	chr1	16348411	16348412	rs945425	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	1p36.13	CLCNKA	rs945425-C	0.6719	8E-7		0.4071	[0.25-0.57] unit decrease	Affymetrix [~ 9500000] (imputed)	N
709	chr1	16348411	16348412	rs945425	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	1p36.13	CLCNKA	rs945425-C	0.6719	7E-9		0.1904	[0.13-0.25] unit increase	Affymetrix [~ 9500000] (imputed)	N
709	chr1	16348411	16348412	rs945425	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	1p36.13	CLCNKA	rs945425-C	0.6719	1E-12		0.9957	[0.72-1.27] unit increase	Affymetrix [~ 9500000] (imputed)	N
709	chr1	16348411	16348412	rs945425	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume	19,260 European ancestry individuals	NA	1p36.13	CLCNKA	rs945425-C	0.6719	7E-6		1.0888	[0.61-1.56] unit increase	Affymetrix [~ 9500000] (imputed)	N
709	chr1	16348411	16348412	rs945425	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction	19,260 European ancestry individuals	NA	1p36.13	CLCNKA	rs945425-C	0.6719	2E-10		0.3818	[0.26-0.5] unit decrease	Affymetrix [~ 9500000] (imputed)	N
709	chr1	16348411	16348412	rs945425	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular ejection fraction	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	1p36.13	CLCNKA	rs945425-?	NR	6E-25				Affymetrix [13660711] (imputed)	N
709	chr1	16349136	16349137	rs9442189	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p36.13	CLCNKA	rs9442189-A	0.026	6E-6		0.1053	[0.059-0.151] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
709	chr1	16358147	16358148	rs2015509	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	1p36.13	HSPB7	rs2015509-T	0.3293	1E-6		0.2618	[0.16-0.37] unit increase	Affymetrix [8590397] (imputed)	N
709	chr1	16362718	16362719	rs74057559	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	1p36.13	SPEN, C1orf64, ZBTB17, HSPB7	rs74057559-?	NR	3E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
709	chr1	16367267	16367268	rs34590307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs34590307-T	NR	1E-11		0.0229	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
709	chr1	16368481	16368481	rs35127884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	1p36.13		rs35127884-C	0.46724	1E-9		0.0242724	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
709	chr1	16368976	16368977	rs2007471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.13		rs2007471-T	NR	3E-20		0.0169	[0.013-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.13	CLCNKB, RP11-5P18.10	rs2007471-T	0.36764	5E-20		0.020957978	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.447087	2E-27				Affymetrix, Illumina [24332387] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.366421	4E-26		0.021238	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.444001	4E-26				Affymetrix, Illumina [24653286] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.366123	8E-27		0.021546	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.442142	2E-29				Affymetrix, Illumina [24558453] (imputed)	N
709	chr1	16368976	16368977	rs2007471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.13	NR	rs2007471-T	0.366183	1E-29		0.022727	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
709	chr1	16368976	16368977	rs2007471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.13		rs2007471-?	NR	1E-23				NR [~ 8900000] (imputed)	N
709	chr1	16370178	16370178	rs140307022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.13	CLCNKB, RP11-5P18.10	rs140307022-AGCTCT	0.399727	5E-22		0.02223228	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
709	chr1	16370178	16370178	rs140307022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1p36.13	CLCNKB, RP11-5P18.10	rs140307022-AGCTCT	0.3999	1E-9		0.02246955	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr1	16370188	16370188	rs13306239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.13		rs13306239-AGCTCT	NR	2E-21		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
709	chr1	16370214	16370215	rs868950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.13		rs868950-G	NR	7E-21		0.0163	[0.013-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
709	chr1	16371066	16371067	rs2015352	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p36.13	CLCNKB	rs2015352-G		2E-8		0.013	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
709	chr1	16371509	16371510	rs7365304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p36.13		rs7365304-A	NR	6E-14		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
709	chr1	16375209	16375210	rs9633514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.13	CLCNKB	rs9633514-A	0.368486	4E-23		0.022911321	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
709	chr1	16376830	16376831	rs10803412	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1p36.13	NR	rs10803412-C	NR	6E-9		1.053	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
709	chr1	16376952	16376953	rs10927895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs10927895-T	NR	7E-14		0.028	[0.021-0.035] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16393356	16393357	rs9442235	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1p36.13	FAM131C	rs9442235-?	0.4154	6E-6	(PC1)			Illumina [475971]	N
710	chr1	16417025	16417026	rs28429281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs28429281-A	NR	8E-39		0.0314	[0.027-0.036] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16417025	16417026	rs28429281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p36.13	NR	rs28429281-A	NR	8E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16417025	16417026	rs28429281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.13	NR	rs28429281-A	NR	9E-11		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16419588	16419589	rs28711771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.13		rs28711771-?	NR	6E-8				NR [~ 8900000] (imputed)	N
710	chr1	16442846	16442847	rs924202	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	1p36.13		rs924202-?	NR	6E-9		0.0053162	[0.0035-0.0071] unit decrease	NR [NR]	N
710	chr1	16442846	16442847	rs924202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs924202-G	NR	1E-48		0.0351	[0.03-0.04] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16442907	16442908	rs4661702	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	1p36.13	intergenic	rs4661702-G	0.247804	1E-6	(omega-3 PUFA)			Illumina [621723]	N
710	chr1	16453170	16453171	rs1566147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.13	NR	rs1566147-T	NR	2E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16453170	16453171	rs1566147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs1566147-T	NR	4E-68		0.0463	[0.041-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16453170	16453171	rs1566147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p36.13	NR	rs1566147-T	NR	5E-10		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16453170	16453171	rs1566147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.13	NR	rs1566147-T	NR	2E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16453670	16453671	rs16852471	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs16852471-T	NR	2E-9		0.0603	[0.041-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16455051	16455052	rs11260721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs11260721-T	NR	4E-20		0.0372	[0.029-0.045] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16460695	16460696	rs115292598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs115292598-A	NR	6E-10		0.0306	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16464935	16464936	rs2291804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs2291804-T	NR	1E-15		0.0653	[0.049-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16472717	16472718	rs78626564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs78626564-T	NR	8E-12		0.0431	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
710	chr1	16497271	16497272	rs28629977	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	EPHA2	rs28629977-C	0.564375	2E-10	(EPHA2, 4834_61_2)	0.14759374	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
710	chr1	16498047	16498048	rs11588341	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1p36.13	NR	rs11588341-A	0.427582	2E-9		0.0120369	[0.0081-0.016] unit increase	Affymetrix [16583148] (imputed)	N
710	chr1	16504380	16504381	rs7538833	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.13	intergenic	rs7538833-T	0.3761	5E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix [18391927] (imputed)	N
710	chr1	16504548	16504549	rs7538966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.13		rs7538966-?	NR	2E-11				NR [~ 8900000] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.13		rs1497406-G	NR	7E-25		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.13		rs1497406-G	NR	4E-313		0.0756	[0.072-0.08] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1p36.13		rs1497406-G	0.805721	1E-40		0.0586691	[0.05-0.067] unit increase	Illumina [13476165] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	1p36.13		rs1497406-G	NR	4E-8		0.0487	[0.031-0.066] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p36.13		rs1497406-G	NR	1E-42		0.028	[0.024-0.032] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p36.13		rs1497406-G	NR	3E-58		0.0322	[0.028-0.036] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1p36.13	EPHA2	rs1497406-?	NR	8E-45		0.0033	[0.0027-0.0039] unit decrease	Affymetrix [21347608] (imputed)	N
710	chr1	16505319	16505320	rs1497406	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1p36.13	EPHA2	rs1497406-?	NR	2E-66		0.0068	[0.006-0.0076] unit decrease	Affymetrix [21347608] (imputed)	N
710	chr1	16505319	16505320	rs1497406	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p36.13	ARHGEF19	rs1497406-A	0.42081	1E-300		0.0212569	[0.02-0.022] unit decrease	Affymetrix [13995440] (imputed)	N
710	chr1	16505319	16505320	rs1497406	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p36.13	ARHGEF19	rs1497406-A	0.420817	5E-72		0.00705001	[0.0063-0.0078] unit decrease	Affymetrix [13995440] (imputed)	N
710	chr1	16505319	16505320	rs1497406	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p36.13	EPHA2, ARHGEF19	rs1497406-G	0.58	1E-54		15.6	z-score increase	Affymetrix [4312306] (imputed)	N
710	chr1	16505319	16505320	rs1497406	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	1p36.13	NR	rs1497406-?	NR	4E-7		0.0211	[0.013-0.029] unit decrease	Illumina [~ 7800000] (imputed)	N
710	chr1	16505319	16505320	rs1497406	22010049	Middelberg RP	2011-11-01	Hum Mol Genet	Loci affecting gamma-glutamyl transferase in adults and adolescents show age x SNP interaction and cardiometabolic disease associations.	Gamma glutamyl transferase levels	12,526 European ancestry individuals	NA	1p36.13	intergenic	rs1497406-T	0.41	4E-8		0.078	[0.051-0.105] unit decrease	Illumina [2380486] (imputed)	N
710	chr1	16505319	16505320	rs1497406	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	1p36.13	EPHA2, RSG1	rs1497406-G	0.56	3E-19		3.8	[2.70-4.80] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
710	chr1	16509670	16509671	rs7538216	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.13	intergenic	rs7538216-T	0.422	5E-8		0.0132	[0.0085-0.0179] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
710	chr1	16510893	16510894	rs36086195	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p36.13	NR	rs36086195-T	0.5791	1E-15		0.001839	[0.0014-0.0023] unit increase	Affymetrix [NR] (imputed)	N
710	chr1	16510893	16510894	rs36086195	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p36.13	EPHA2, ARHGEF19	rs36086195-T	0.58	1E-39		13.2	z-score increase	Affymetrix [4314223] (imputed)	N
710	chr1	16510893	16510894	rs36086195	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.13	EPHA2, ARHGEF19	rs36086195-?		7E-44		0.0682	[0.059-0.078] unit decrease	Illumina [31500000] (imputed)	N
710	chr1	16510893	16510894	rs36086195	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.13	EPHA2, ARHGEF19	rs36086195-?		5E-9		0.0246	[0.016-0.033] unit decrease	Illumina [31500000] (imputed)	N
710	chr1	16510893	16510894	rs36086195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p36.13	NR	rs36086195-T	0.579073	2E-9		0.0188837	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
710	chr1	16510893	16510894	rs36086195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.13	NR	rs36086195-T	0.580121	3E-43		0.0113699	[0.0097-0.013] unit increase	Affymetrix [16582909] (imputed)	N
710	chr1	16510893	16510894	rs36086195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p36.13	NR	rs36086195-T	0.579078	2E-52		0.017046	[0.015-0.019] unit increase	Affymetrix [16582621] (imputed)	N
710	chr1	16510893	16510894	rs36086195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.13	NR	rs36086195-T	0.580121	1E-35		0.0116575	[0.0098-0.0135] unit increase	Affymetrix [16582965] (imputed)	N
710	chr1	16510893	16510894	rs36086195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p36.13	NR	rs36086195-T	0.579078	5E-44		0.0167429	[0.014-0.019] unit increase	Affymetrix [16582614] (imputed)	N
710	chr1	16510893	16510894	rs36086195	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	1p36.13	EPHA2, ARHGEF19	rs36086195-?	NR	1E-36		0.06774	[0.057-0.078] unit increase novel	Illumina [6108953] (imputed)	N
710	chr1	16511901	16511902	rs71003251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.13		rs71003251-C	0.648826	9E-12		0.016412714	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
710	chr1	16512585	16512586	rs12078100	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p36.13	NR	rs12078100-C	0.376535	2E-24		0.0199294	[0.016-0.024] unit decrease	Affymetrix [15000001]	N
710	chr1	16512585	16512586	rs12078100	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p36.13	ARHGEF19	rs12078100-C	0.376912	9E-10		0.0131578	[0.0089-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
710	chr1	16512585	16512586	rs12078100	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p36.13	ARHGEF19	rs12078100-C	0.376908	1E-12		0.0152704	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
710	chr1	16512585	16512586	rs12078100	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p36.13	FBXO42	rs12078100-?	NR	7E-13		0.0187	[0.014-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
710	chr1	16513925	16513926	rs924204	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHA2	5,361 Icelandic ancestry individuals	NA	1p36.13		rs924204-A	0.4127	6E-16		0.141203	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
710	chr1	16513925	16513926	rs924204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p36.13		rs924204-G	NR	7E-17		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
710	chr1	16514368	16514369	rs4661721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs4661721-G	NR	3E-38		0.0518	[0.044-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr1	16514368	16514369	rs4661721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.13	NR	rs4661721-G	NR	4E-10		0.025	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16515804	16515805	rs6656611	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.13	intergenic	rs6656611-T	0.459	1E-8		0.0122	[0.0079-0.0165] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
711	chr1	16526193	16526194	rs11260936	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	1p36.13		rs11260936-?	NR	3E-18		0.00799562	[0.0062-0.0098] unit decrease	NR [NR]	N
711	chr1	16528217	16528218	rs6676143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.13		rs6676143-?	NR	6E-10				NR [~ 8900000] (imputed)	N
711	chr1	16528472	16528484	rs200243292	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	1p36.13	ARHGEF19	rs200243292-TACCCTAGGGACC	0.26	1E-8	(right endocanthion-left cheilion distance)	0.11	NR unit decrease	Illumina [7029494] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	2E-12		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	1E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	4E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	4E-130		0.0661	[0.061-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	9E-23		0.0268	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	6E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16534254	16534255	rs221057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.13	NR	rs221057-G	NR	2E-23		0.0272	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr1	16538271	16538272	rs11260703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs11260703-C	NR	1E-29		0.0393	[0.032-0.046] unit increase	Affymetrix [9000000] (imputed)	N
711	chr1	16543389	16543390	rs61769779	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.13	NR	rs61769779-A	0.125844	1E-16		0.0379845	[0.029-0.047] unit increase	NR [19129689] (imputed)	N
711	chr1	16556785	16556786	rs34966560	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p36.13	RSG1	rs34966560-T	0.2945	1E-10		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
711	chr1	16557690	16557691	rs11260709	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p36.13	RSG1	rs11260709-T	0.6799	1E-9		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
711	chr1	16568612	16568613	rs4661727	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.13		rs4661727-C	0.34	3E-22		9.7	z score increase	Affymetrix [9061022] (imputed)	N
711	chr1	16568612	16568613	rs4661727	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.13		rs4661727-C	0.34	2E-12		7.04	z score increase	Affymetrix [9061022] (imputed)	N
711	chr1	16568612	16568613	rs4661727	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.13	NR	rs4661727-C	0.3806	6E-10				NR [9056863] (imputed)	N
711	chr1	16568612	16568613	rs4661727	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.13	NR	rs4661727-C	0.3806	3E-9				NR [9056863] (imputed)	N
711	chr1	16591071	16591072	rs6698317	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.13		rs6698317-A	0.23	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
711	chr1	16618331	16618332	rs1934490	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FBXO42	rs1934490-?	NR	8E-9		2.70689	[NR] unit increase	Affymetrix [NR] (imputed)	N
712	chr1	16656517	16656518	rs12131407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs12131407-T	NR	2E-18		0.052	[0.04-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr1	16685215	16685216	rs141626638	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SZRD1	rs141626638-?	NR	8E-9		2.70373	[NR] unit increase	Affymetrix [NR] (imputed)	N
712	chr1	16734626	16734627	rs681104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs681104-G	NR	1E-22		0.0235	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
713	chr1	16786635	16786636	rs1746722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.13	NR	rs1746722-C	NR	3E-12		0.0184	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
713	chr1	16808224	16808225	rs11260765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs11260765-?	NR	2E-8				NR [~ 8900000] (imputed)	N
713	chr1	16859324	16859325	rs78886584	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.13	FAM231B	rs78886584-A	0.509017	9E-10		0.0084915	[0.0058-0.0112] unit decrease	Affymetrix [12370749]	N
713	chr1	16859324	16859325	rs78886584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.13		rs78886584-?	NR	4E-9				NR [~ 8900000] (imputed)	N
716	chr1	17206256	17206257	rs79150293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs79150293-?	NR	3E-16				NR [~ 8900000] (imputed)	N
716	chr1	17210656	17210657	rs114489401	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs114489401-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
716	chr1	17216098	17216099	rs113018699	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p36.13	RP11-108M9.4, CROCC	rs113018699-C	0.9808	6E-6		0.1475	[0.084-0.211] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
716	chr1	17216330	17216331	rs6586513	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	1p36.13	CROCC	rs6586513-C	0.29	4E-6		1.24	[1.13-1.36]	Affymetrix, Illumina [2217510] (imputed)	N
716	chr1	17257703	17257704	rs148657405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.13	CROCC	rs148657405-C	0.055849	3E-9		0.034624677	[0.023-0.046] unit increase	Affymetrix [93095623] (imputed)	N
716	chr1	17268328	17268329	rs9435715	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	1p36.13		rs9435715-C	0.522157	3E-6		0.0146666	[0.0084-0.0209] unit decrease	Illumina [13900000] (imputed)	N
716	chr1	17276222	17276223	rs11585710	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	1p36.13		rs11585710-C	0.616578	5E-7		0.00748947	[0.0023-0.0127] unit increase	Illumina [7666802] (imputed)	N
716	chr1	17276626	17276627	rs7517838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs7517838-T	0.390752	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
716	chr1	17287413	17287414	rs2273113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.13	CROCC	rs2273113-C	0.43039	1E-9		0.013579408	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
716	chr1	17287413	17287414	rs2273113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.13	CROCC	rs2273113-C	0.430372	8E-11		0.0145779615	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
716	chr1	17287413	17287414	rs2273113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.13	NR	rs2273113-C	0.429587	6E-12		0.013522	[0.0097-0.0174] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
716	chr1	17287413	17287414	rs2273113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.13		rs2273113-?	NR	6E-10				NR [~ 8900000] (imputed)	N
716	chr1	17289910	17289911	rs6691985	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.13	CROCC	rs6691985-T	NR	5E-8		0.0167636	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
716	chr1	17289910	17289911	rs6691985	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	CROCC	rs6691985-T	NR	6E-21		0.0291142	[0.023-0.035] unit decrease	Affymetrix [321114] (imputed)	N
716	chr1	17301447	17301448	rs2235933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	MFAP2	rs2235933-T	NR	3E-14		0.0238742	[0.018-0.03] unit decrease	Affymetrix [321016] (imputed)	N
716	chr1	17301447	17301448	rs2235933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	MFAP2	rs2235933-T	NR	3E-14		0.0242745	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17301671	17301672	rs761423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	MFAP2	rs761423-C	NR	1E-19		0.0258364	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
717	chr1	17301671	17301672	rs761423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	MFAP2	rs761423-C	NR	1E-12		0.0219833	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
717	chr1	17301671	17301672	rs761423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	MFAP2	rs761423-C	NR	2E-15		0.0243503	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
717	chr1	17301671	17301672	rs761423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	MFAP2	rs761423-C	NR	6E-11		0.0187203	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
717	chr1	17301671	17301672	rs761423	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.13	NR	rs761423-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17301671	17301672	rs761423	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.13	NA	rs761423-T	0.5412	7E-10		0.0105	[0.0072-0.0138] unit increase	NR [~ 27400000] (imputed)	N
717	chr1	17301779	17301780	rs761422	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	MFAP2	rs761422-G	NR	5E-15		0.0219307	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
717	chr1	17301779	17301780	rs761422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.13		rs761422-?	NR	4E-23				NR [~ 8900000] (imputed)	N
717	chr1	17303588	17303589	rs2235932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	MFAP2	rs2235932-C	NR	2E-16		0.0239644	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17303588	17303589	rs2235932	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	NR	rs2235932-C	0.35375	2E-13	(MFAP2, 9294_45_3)	0.17944866	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
717	chr1	17303588	17303589	rs2235932	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	NR	rs2235932-C	0.35375	1E-11	(SCGB1A1, 10569_28_3)	0.17505544	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
717	chr1	17305819	17305820	rs9435729	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1p36.13	RP1-37C10.3	rs9435729-C	0.79	5E-6		0.92	[0.53-1.31] g/day increase	Affymetrix [10353649] (imputed)	N
717	chr1	17306028	17306029	rs9435731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.13		rs9435731-A	NR	4E-100		0.0278	[0.025-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
717	chr1	17306028	17306029	rs9435731	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p36.13	MFAP2	rs9435731-A	0.51	7E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
717	chr1	17306595	17306596	rs2284747	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.13	MFAP2	rs2284747-T	0.5213	2E-16		0.0154	[0.012-0.019] unit increase	Affymetrix [18391927] (imputed)	N
717	chr1	17306674	17306675	rs2284746	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.13		rs2284746-C	0.4811	5E-9		0.07683023	[0.05-0.104] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
717	chr1	17306674	17306675	rs2284746	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p36.13	NR	rs2284746-?	NR	3E-13		0.04452905	[0.033-0.056] unit increase	Illumina [34656550] (imputed)	N
717	chr1	17306674	17306675	rs2284746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs2284746-?	NR	1E-131				NR [~ 8900000] (imputed)	N
717	chr1	17306674	17306675	rs2284746	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1p36.13	MFAP2	rs2284746-G	0.5218	1E-10		0.042	[0.028-0.056] unit decrease	Affymetrix [27624732] (imputed)	N
717	chr1	17306674	17306675	rs2284746	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1p36.13	MFAP2	rs2284746-C	0.72	2E-25		0.06	[0.046-0.074] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
717	chr1	17306674	17306675	rs2284746	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p36.13	MFAP2	rs2284746-C	0.475	1E-40		0.04	[0.034-0.046] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
717	chr1	17306674	17306675	rs2284746	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p36.13	MFAP2	rs2284746-G	0.52	5E-15		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
717	chr1	17306674	17306675	rs2284746	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	1p36.13	MFAP2	rs2284746-?	NR	2E-11	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
717	chr1	17306674	17306675	rs2284746	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	1p36.13	MFAP2	rs2284746-G	0.52	8E-16	(FEV1/FVC)	0.04	[0.030-0.050] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
717	chr1	17306674	17306675	rs2284746	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.13	MFAP2	rs2284746-C	0.48	4E-29		0.04	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
717	chr1	17306869	17306870	rs55750792	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.13	ATP13A2, MFAP2	rs55750792-G	0.488723	7E-19	(females)	0.02722	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
717	chr1	17306869	17306870	rs55750792	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.13	ATP13A2, MFAP2	rs55750792-G	0.488723	4E-16		0.01781	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
717	chr1	17306869	17306870	rs55750792	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.13	ATP13A2, MFAP2	rs55750792-G	0.488723	3E-11	(females)	0.01929	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
717	chr1	17306869	17306870	rs55750792	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.13	ATP13A2, MFAP2	rs55750792-G	0.488723	3E-10		0.01266	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
717	chr1	17306869	17306870	rs55750792	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p36.13	ATP13A2, MFAP2	rs55750792-G	0.488723	3E-8	(females)	0.01883	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
717	chr1	17306922	17306923	rs56265117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	MFAP2, RP1-37C10.3	rs56265117-T	NR	2E-18		0.0304562	[0.024-0.037] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17306922	17306923	rs56265117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	MFAP2, RP1-37C10.3	rs56265117-T	NR	3E-17		0.0291403	[0.022-0.036] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17306947	17306948	rs55779591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.13	MFAP2, RP1-37C10.3	rs55779591-T	NR	2E-8		0.0170051	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
717	chr1	17306947	17306948	rs55779591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.13	MFAP2, RP1-37C10.3	rs55779591-T	NR	1E-9		0.0185015	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
717	chr1	17306947	17306948	rs55779591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	MFAP2, RP1-37C10.3	rs55779591-T	NR	3E-23		0.0304513	[0.024-0.036] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17308157	17308158	rs9435732	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.13	NR	rs9435732-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs9435732-?	NR	3E-46				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.13		rs9435732-?	NR	2E-10				NR [~ 8900000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7313000000000001	8E-13	(EA)	0.0303	[0.022-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7313000000000001	4E-10	(EA, men)	0.039	[0.027-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7301	7E-14		0.0297	[0.022-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7301	7E-10	(women)	0.0357	[0.024-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7301	3E-11	(men)	0.0391	[0.028-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7351	8E-6	(EA,women)	0.0276	[0.015-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7313000000000001	2E-12	(EA)	0.0336	[0.024-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7301	2E-12		0.0324	[0.023-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7293000000000001	2E-10	(men)	0.0429	[0.03-0.056] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	MFAP2	rs9435732-C	0.7266	4E-10	(EA, men)	0.0431	[0.03-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-?	0.7313000000000001	6E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-?	0.7313000000000001	2E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-?	0.7313000000000001	2E-10	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-?	0.7301	3E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	MFAP2	rs9435732-?	0.7301	1E-11	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	1E-9		0.0496	[0.034-0.066] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	4E-12		0.0301	[0.022-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	3E-9	(men)	0.0385	[0.026-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	3E-19				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	2E-12	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	1E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	5E-8	(women)	0.027	[0.017-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	3E-16		0.0318	[0.024-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p36.13	MFAP2	rs9435732-T	0.2658	1E-11	(men)	0.038	[0.027-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr1	17308157	17308158	rs9435732	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	MFAP2	rs9435732-T	0.2715	9E-12	(EA, men)	0.0365	[0.026-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17308157	17308158	rs9435732	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	MFAP2	rs9435732-T	0.2715	4E-16	(EA)	0.0309	[0.023-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17308157	17308158	rs9435732	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	MFAP2	rs9435732-T	0.2715	3E-8	(EA,women)	0.0272	[0.018-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17308253	17308254	rs9435733	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p36.13	MFAP2	rs9435733-T	0.4817	4E-20		0.0231	[0.018-0.028] unit increase	Affymetrix [19819130] (imputed)	N
717	chr1	17308253	17308254	rs9435733	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.13	MFAP2	rs9435733-T	0.4817	3E-23		0.0231	[0.019-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
717	chr1	17308253	17308254	rs9435733	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.13	MFAP2	rs9435733-T	0.4817	6E-61		0.0389	[0.034-0.044] unit increase	Affymetrix [19819130] (imputed)	N
717	chr1	17308253	17308254	rs9435733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.13	RP1-37C10.3	rs9435733-T	0.4784	2E-11		0.0426	[0.03-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
717	chr1	17309717	17309718	rs3754512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.13		rs3754512-?	NR	7E-76				NR [~ 8900000] (imputed)	N
717	chr1	17311881	17311882	rs6682671	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB1A1	5,344 Icelandic ancestry individuals	NA	1p36.13		rs6682671-C	0.2956	1E-19		0.169458	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
717	chr1	17311881	17311882	rs6682671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3	rs6682671-C	NR	2E-20		0.0276218	[0.022-0.033] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17311881	17311882	rs6682671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3	rs6682671-C	NR	6E-13		0.0212451	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17311881	17311882	rs6682671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3	rs6682671-C	NR	2E-11		0.0201015	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17311881	17311882	rs6682671	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p36.13	NR	rs6682671-T	0.6387	9E-10	(Rostral Middle Frontal)	22.388662	[15.22-29.56] unit increase	Affymetrix, Illumina [NR]	N
717	chr1	17312742	17312743	rs3170740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p36.13		rs3170740-T	0.317935	2E-32		0.0258496	[0.022-0.03] unit increase	Illumina [13479295] (imputed)	N
717	chr1	17312742	17312743	rs3170740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.13		rs3170740-T	NR	1E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
717	chr1	17312742	17312743	rs3170740	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p36.13	ATP13A2	rs3170740-C		2E-9		0.013	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
717	chr1	17312742	17312743	rs3170740	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.13	ATP13A2	rs3170740-?	NR	1E-37		0.03937045	[0.033-0.045] unit increase	Illumina [27896057] (imputed)	N
717	chr1	17314701	17314702	rs3738815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs3738815-T	NR	2E-13		0.0266312	[0.02-0.034] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17315424	17315425	rs4920605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFAP2	5,365 Icelandic ancestry individuals	NA	1p36.13		rs4920605-G	0.4032	3E-22		0.175849	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
717	chr1	17315424	17315425	rs4920605	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.13		rs4920605-G	0.45	3E-48		14.6	z score increase	Affymetrix [9061022] (imputed)	N
717	chr1	17315424	17315425	rs4920605	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.13		rs4920605-G	0.45	1E-26		10.67	z score increase	Affymetrix [9061022] (imputed)	N
717	chr1	17315424	17315425	rs4920605	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.13	NR	rs4920605-G	0.4303	1E-17				NR [9056863] (imputed)	N
717	chr1	17315424	17315425	rs4920605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	RP1-37C10.3, ATP13A2	rs4920605-G	NR	3E-18		0.0270865	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17315424	17315425	rs4920605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	RP1-37C10.3, ATP13A2	rs4920605-G	NR	2E-25		0.0321214	[0.026-0.038] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17315424	17315425	rs4920605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1p36.13	NR	rs4920605-?		8E-10				NR [7428630] (imputed)	N
717	chr1	17315424	17315425	rs4920605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p36.13	NR	rs4920605-?		3E-9				NR [7428630] (imputed)	N
717	chr1	17315424	17315425	rs4920605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.13	CROCC, MFAP2, ATP13A2, SDHB	rs4920605-?		2E-8				NR [7428630] (imputed)	N
717	chr1	17315424	17315425	rs4920605	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.13	MFAP2	rs4920605-A	0.554	1E-17	(Microfibrillar-associated protein 2, MFAP2.9294.45.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
717	chr1	17315424	17315425	rs4920605	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p36.13	RP1-37C10.3, ATP13A2	rs4920605-A	0.5604	4E-8		0.0356	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
717	chr1	17315424	17315425	rs4920605	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p36.13	RP1-37C10.3, ATP13A2	rs4920605-A	0.5703	2E-9		0.0487	[0.033-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
717	chr1	17319010	17319011	rs2076603	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	1p36.13		rs2076603-?	NR	5E-11				NR [9705931] (imputed)	N
717	chr1	17319010	17319011	rs2076603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.13		rs2076603-?	NR	3E-10				NR [~ 8900000] (imputed)	N
717	chr1	17319286	17319287	rs4920608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs4920608-C	NR	4E-12		0.0203475	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17319286	17319287	rs4920608	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p36.13	ATP13A2	rs4920608-C	0.3567	4E-8		0.0793	[0.051-0.108] unit increase	Affymetrix [~ 11900000] (imputed)	N
717	chr1	17323267	17323268	rs56274609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs56274609-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17323977	17323978	rs116488926	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs116488926-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17325954	17325955	rs6684770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs6684770-A	NR	1E-8		0.0180898	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17327428	17327429	rs7550758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs7550758-C	NR	4E-9		0.0165515	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
717	chr1	17327428	17327429	rs7550758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs7550758-C	NR	1E-26		0.0302507	[0.025-0.036] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17327428	17327429	rs7550758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	RP1-37C10.3, ATP13A2	rs7550758-C	NR	3E-14		0.0216017	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17328199	17328200	rs6657613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.13		rs6657613-A	0.48	3E-13		7.28	z score increase	Affymetrix [9061022] (imputed)	N
717	chr1	17328199	17328200	rs6657613	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.13	NR	rs6657613-A	0.4896	1E-13				NR [9056863] (imputed)	N
717	chr1	17328199	17328200	rs6657613	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	ATP13A2	rs6657613-A	0.5026	7E-13	(EA,men)	0.0364	[0.026-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17328199	17328200	rs6657613	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	ATP13A2	rs6657613-A	0.5026	4E-9	(EA, women)	0.0268	[0.018-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17328199	17328200	rs6657613	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.13	ATP13A2	rs6657613-A	0.5026	4E-18	(EA)	0.0309	[0.024-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr1	17331675	17331676	rs3738814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1p36.13		rs3738814-G	NR	8E-9		0.0615	[0.041-0.082] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
717	chr1	17331675	17331676	rs3738814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	ATP13A2	rs3738814-G	NR	4E-20		0.0259922	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17331675	17331676	rs3738814	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p36.13	NR	rs3738814-?	NR	5E-10		0.03539952	[0.024-0.047] unit decrease	Illumina [34656550] (imputed)	N
717	chr1	17331675	17331676	rs3738814	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p36.13	ATP13A2	rs3738814-A	0.5275	4E-10	(women)	0.0375	[0.026-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17331675	17331676	rs3738814	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p36.13	ATP13A2	rs3738814-?	0.5412	7E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr1	17331675	17331676	rs3738814	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1p36.13	ATP13A2	rs3738814-A	0.3	1E-24		0.061	[0.047-0.075] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
717	chr1	17331675	17331676	rs3738814	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	1p36.13	ATP13A2, SDHB	rs3738814-A	0.35	2E-7		0.06	[0.04-0.08] cm increase	Illumina [420885]	N
717	chr1	17336252	17336253	rs6662202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	ATP13A2	rs6662202-T	NR	7E-11		0.0253044	[0.018-0.033] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17336594	17336595	rs6662605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	ATP13A2	rs6662605-G	NR	2E-9		0.0233435	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17336594	17336595	rs6662605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	ATP13A2	rs6662605-G	NR	3E-8		0.0196609	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17341751	17341752	rs2647167	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	ATP13A2	rs2647167-T	NR	2E-16		0.026201	[0.02-0.032] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17342259	17342260	rs2746478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	SDHB	rs2746478-T	NR	4E-14		0.0242526	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17342658	17342659	rs9435672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	SDHB	rs9435672-G	NR	1E-14		0.021731	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17342782	17342783	rs11203280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	SDHB	rs11203280-T	NR	2E-11		0.0201026	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17342923	17342924	rs9435739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	SDHB	rs9435739-G	NR	1E-13		0.0223178	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17342923	17342924	rs9435739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	SDHB	rs9435739-G	NR	1E-8		0.0186635	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17342923	17342924	rs9435739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	SDHB	rs9435739-G	NR	4E-14		0.02447	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17350142	17350143	rs2235930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	SDHB	rs2235930-A	NR	5E-10		0.0180702	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17350930	17350931	rs12142244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p36.13	SDHB	rs12142244-G	NR	2E-8		0.017432	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17350930	17350931	rs12142244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	SDHB	rs12142244-G	NR	1E-12		0.0218458	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17371151	17371152	rs12073028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs12073028-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17371684	17371685	rs732679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	SDHB	rs732679-C	NR	2E-8		0.0164191	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17382499	17382500	rs3754509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.13	SDHB	rs3754509-T	NR	2E-9		0.0175308	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
717	chr1	17382945	17382946	rs3754507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	SDHB	rs3754507-A	NR	2E-10		0.0205327	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17386103	17386104	rs12404121	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	SDHB	rs12404121-C	NR	5E-12		0.0204055	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17398848	17398849	rs3818042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	PADI2	rs3818042-G	NR	9E-19		0.025387	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17398848	17398849	rs3818042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs3818042-A	0.538044	3E-15				Affymetrix, Illumina [24653286] (imputed)	N
717	chr1	17398848	17398849	rs3818042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.13	NR	rs3818042-A	0.57869	5E-17		0.015638	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
717	chr1	17398848	17398849	rs3818042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs3818042-A	0.539048	9E-14				Affymetrix, Illumina [24558453] (imputed)	N
717	chr1	17398848	17398849	rs3818042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.13	NR	rs3818042-A	0.578621	2E-15		0.01482	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
717	chr1	17403227	17403228	rs7523863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	PADI2	rs7523863-C	NR	3E-9		0.0189817	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17404801	17404802	rs35108553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.13	PADI2	rs35108553-T	NR	1E-8		0.0164631	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
717	chr1	17405948	17405949	rs2057094	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	1p36.13	PADI2	rs2057094-A	0.43	8E-6		0.141	[0.08-0.202] unit decrease	Illumina [6380737] (imputed)	N
717	chr1	17407957	17407958	rs60402019	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	1p36.13	PADI2	rs60402019-?		6E-6				Illumina [2668805]	N
717	chr1	17409381	17409382	rs2647187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.13		rs2647187-C	NR	2E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
717	chr1	17409381	17409382	rs2647187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.13	PADI2	rs2647187-C	0.581413	8E-11		0.014624742	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
717	chr1	17413458	17413459	rs2076614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	PADI2	rs2076614-A	NR	7E-9		0.0185972	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17413898	17413899	rs761426	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.13	PADI2	rs761426-A	NR	2E-10		0.108418	[0.071-0.145] unit decrease	Illumina [8380626] (imputed)	N
717	chr1	17413898	17413899	rs761426	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.13	PADI2	rs761426-A	0.55	1E-6	(East Asian)	0.129	[0.077-0.181] unit decrease	Illumina [8380626] (imputed)	N
717	chr1	17420397	17420398	rs2235920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.13	PADI2	rs2235920-C	NR	7E-15		0.022267	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
717	chr1	17420397	17420398	rs2235920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	PADI2	rs2235920-C	NR	6E-10		0.0190809	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
717	chr1	17420397	17420398	rs2235920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.13	PADI2	rs2235920-C	NR	2E-9		0.0173316	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
717	chr1	17420397	17420398	rs2235920	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.13	NR	rs2235920-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
717	chr1	17429773	17429774	rs2235909	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1p36.13		rs2235909-T	NR	2E-9	(conditional on rs2301888)	0.081	[0.054-0.108] unit decrease	NR [13810676] (imputed)	N
718	chr1	17476277	17476278	rs12035906	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.13	PADI1	rs12035906-?	NR	2E-6	(PC 34:1)	0.2054518	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
718	chr1	17476762	17476763	rs12079362	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	1p36.13		rs12079362-A	NR	4E-7		3.98		Illumina [7574753] (imputed)	N
718	chr1	17550600	17550601	rs3003482	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis	182 European ancestry cases, 1,180 European ancestry controls	NA	1p36.13	PADI1	rs3003482-G	NR	3E-6		1.83	NR	Illumina [602644]	N
718	chr1	17559655	17559656	rs3750296	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p36.13	NR	rs3750296-C	0.341423	2E-24		0.020818	[0.017-0.025] unit decrease	Affymetrix [16668957] (imputed)	N
718	chr1	17559675	17559676	rs3750297	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	1p36.13		rs3750297-A	0.283	3E-10		0.059	[0.041-0.077] unit increase	Affymetrix [812428]	N
718	chr1	17559675	17559676	rs3750297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1p36.13	NR	rs3750297-A	NR	8E-17		0.0224	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
718	chr1	17560122	17560123	rs35823191	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p36.13		rs35823191-?	NR	2E-27		0.0232636	[0.019-0.027] unit decrease	NR [6912294] (imputed)	N
718	chr1	17560194	17560195	rs35408430	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1p36.13		rs35408430-C	0.657806	2E-25		0.022	[0.018-0.026] unit decrease	NR [7250403] (imputed)	N
719	chr1	17580065	17580066	rs2977262	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p36.13	PADI3	rs2977262-A	0.7018	4E-6		0.0363	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
719	chr1	17580065	17580066	rs2977262	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p36.13	PADI3	rs2977262-A	0.7018	4E-6		0.0363	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
719	chr1	17591678	17591679	rs3003429	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	1p36.13	PADI3	rs3003429-T	NR	4E-7	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
719	chr1	17597422	17597423	rs144080386	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	1p36.13		rs144080386-T	0.008094	1E-10		0.24	[0.17-0.31] unit increase	NR [11842647] (imputed)	N
719	chr1	17597422	17597423	rs144080386	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.13	PADI3	rs144080386-T	0.008287	5E-12		1.304	NR	Affymetrix [9154080] (imputed)	N
719	chr1	17600821	17600822	rs11203346	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.13	PADI3	rs11203346-G	0.1662	2E-11		1.07	NR	Affymetrix [9154080] (imputed)	N
719	chr1	17601164	17601165	rs11585357	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	1p36.13	NR	rs11585357-T	0.164464967	4E-18		0.07571428	[0.059-0.093] unit decrease	Illumina [up to 9350000] (imputed)	N
719	chr1	17611547	17611548	rs2977303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.13		rs2977303-?	NR	2E-25				NR [~ 8900000] (imputed)	N
719	chr1	17613808	17613809	rs12568771	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1p36.13	PADI4, PADI3, PADI1	rs12568771-G	NR	2E-6		1.12	[NR]	Illumina [> 1000000] (imputed)	N
719	chr1	17636320	17636321	rs2477131	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p36.13	NR	rs2477131-G	0.208	5E-6	(IFNAR2_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
719	chr1	17643053	17643054	rs34470277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p36.13	PADI4	rs34470277-A	0.367999	3E-16		0.018993529	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
719	chr1	17645186	17645186	rs11464953	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	1p36.13	PADI4	rs11464953-?		7E-16		1.23	[1.17-1.29]	Illumina [NR] (imputed)	N
719	chr1	17655406	17655407	rs1748041	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	1p36.13	PADI4	rs1748041-C	0.301	2E-9		1.1103975		Illumina [252970]	N
719	chr1	17655406	17655407	rs1748041	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	1p36.13	PADI4	rs1748041-C	NA	4E-8				Illumina [252970]	N
719	chr1	17672729	17672730	rs2301888	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1p36.13		rs2301888-A	NR	4E-26		0.88	[0.86-0.9]	NR [13810676] (imputed)	N
719	chr1	17672729	17672730	rs2301888	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.13	PADI4	rs2301888-A	NR	6E-19		0.132119	[0.062-0.203] unit decrease	Illumina [8380626] (imputed)	N
719	chr1	17672729	17672730	rs2301888	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.13	PADI4	rs2301888-A	0.59	9E-13	(East Asian)	0.18293	[0.13-0.23] unit decrease	Illumina [8380626] (imputed)	N
719	chr1	17672729	17672730	rs2301888	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p36.13	PADI4	rs2301888-A	0.35	6E-9	(EA)	0.09994	[0.066-0.134] unit decrease	Illumina [8380626] (imputed)	N
719	chr1	17672729	17672730	rs2301888	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1p36.13	PADI4	rs2301888-A	0.35	5E-21		1.17	[1.13-1.21]	Illumina [133816] (imputed)	N
719	chr1	17672729	17672730	rs2301888	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	PADI4	rs2301888-G	0.65	6E-9	(EA)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
719	chr1	17672729	17672730	rs2301888	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	PADI4	rs2301888-G	0.58	1E-18		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
719	chr1	17672729	17672730	rs2301888	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p36.13	PADI4	rs2301888-G	0.41	8E-13	(East Asian)	1.19	[1.14-1.25]	Affymetrix, Illumina [up to 9739303] (imputed)	N
719	chr1	17674107	17674108	rs2240339	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.13	PADI4	rs2240339-A	0.58	1E-10		1.137139		Illumina [129464] (imputed)	N
719	chr1	17674107	17674108	rs2240339	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.13	PADI4	rs2240339-?	NR	3E-10				Illumina [129464] (imputed)	N
719	chr1	17674401	17674402	rs2240336	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.13	PADI4	rs2240336-?	NR	6E-9		1.14		Illumina [129464] (imputed)	N
719	chr1	17674401	17674402	rs2240336	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	1p36.13	PADI4	rs2240336-?	NR	4E-8		1.11		Illumina [129464] (imputed)	N
719	chr1	17674536	17674537	rs2240335	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	1p36.13	PADI4	rs2240335-A	0.5479392320332094	8E-8	(East Asian)	1.1091988	[1.0679854661803-1.15200265619976]	NR [3611808] (imputed)	N
719	chr1	17674536	17674537	rs2240335	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	1p36.13	PADI4	rs2240335-?	NR	2E-8				Illumina [241523]	N
719	chr1	17674536	17674537	rs2240335	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	1p36.13	PADI4	rs2240335-?		2E-8		1.5	[NR]	Illumina [441398]	N
719	chr1	17677651	17677652	rs61766763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1p36.13	PADI4	rs61766763-C	0.300788	2E-14		0.021288354	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
719	chr1	17677651	17677652	rs61766763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs61766763-C	0.317026	2E-9				Affymetrix, Illumina [19905671] (imputed)	N
719	chr1	17677651	17677652	rs61766763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p36.13	NR	rs61766763-C	0.299546	1E-11		0.018091	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
720	chr1	17706931	17706932	rs1924553	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.13	NR	rs1924553-G	0.2602	5E-7	(EA)	0.0386	[0.024-0.054] unit decrease	Illumina [~ 11800000] (imputed)	N
720	chr1	17708348	17708349	rs7556072	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1p36.13	NR	rs7556072-A	0.44046	2E-8		0.0533888	[0.034-0.073] unit decrease	Affymetrix [21375087] (imputed)	N
720	chr1	17719931	17719932	rs6678027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.13	NR	rs6678027-G	0.341907	2E-11		0.01347	[0.0095-0.0174] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
720	chr1	17720161	17720162	rs6695640	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.13	PADI6	rs6695640-G	0.6579	3E-10		0.02406992	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
720	chr1	17722362	17722363	rs7538876	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	1p36.13		rs7538876-?	NR	4E-23		1.07163	[1.06-1.09]	NR [688737]	N
720	chr1	17722362	17722363	rs7538876	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	1p36.13	RCC2, PADI6	rs7538876-A	0.356	8E-17		1.25	[NR]	Illumina [24988228] (imputed)	N
720	chr1	17722362	17722363	rs7538876	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	1p36.13	RCC2, PADI6	rs7538876-A		7E-14		1.25	[1.18-1.32]	Illumina [38500000] (imputed)	N
720	chr1	17722362	17722363	rs7538876	18849993	Stacey SN	2008-10-12	Nat Genet	Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits.	Basal cell carcinoma	930 European ancestry cases, 33,117 European ancestry controls	1,216 European ancestry cases, 2,844 European ancestry controls	1p36.13	RCC2, ARHGEF10L, PADI4, PADI6	rs7538876-A	0.35	4E-12		1.28	[1.19-1.37]	Illumina [304083]	N
720	chr1	17730430	17730431	rs35524229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.13	RP1-20B21.4	rs35524229-C	0.516647	3E-9		0.013193382	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
720	chr1	17744535	17744536	rs57142672	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	1p36.13	RCC2	rs57142672-G	0.34	1E-23		1.13	[NR]	Illumina [at least 560000] (imputed)	N
720	chr1	17746272	17746273	rs7528427	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1p36.13	AC004824.1	rs7528427-T	0.34595	2E-71		1.16	[1.15-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
720	chr1	17746272	17746273	rs7528427	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		1p36.13	RCC2	rs7528427-C	NR	1E-24		1.2195122	[1.18-1.27]	Affymetrix [5734850] (imputed)	N
720	chr1	17749503	17749504	rs730153	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	1p36.13	RCC2	rs730153-A	0.362745	9E-61		0.18210195	[0.16-0.2] unit increase	Affymetrix [7260263] (imputed)	N
720	chr1	17749503	17749504	rs730153	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1p36.13	AC004824.1	rs730153-A	0.364153	2E-57		1.1494253	[1.12-1.16]	Affymetrix [7600000] (imputed)	N
720	chr1	17753339	17753340	rs60387933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	1p36.13		rs60387933-A	NR	8E-34		0.1242	[0.1-0.14] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
720	chr1	17760097	17760098	rs4920607	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1p36.13		rs4920607-?	NR	4E-42		1.16203	[1.14-1.18]	NR [685523]	N
720	chr1	17768871	17768872	rs79889094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs79889094-?	NR	8E-11				NR [~ 8900000] (imputed)	N
720	chr1	17769289	17769290	rs6675912	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	1p36.13		rs6675912-G	0.3510608	2E-11		1.1		Affymetrix [15611556] (imputed)	N
721	chr1	17834741	17834742	rs2254135	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	1p36.13	ARHGEF10L	rs2254135-T	NR	3E-6		0.269	[0.16-0.38] ug/L increase	NR [NR]	N
721	chr1	17919816	17919817	rs6693036	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.13	ARHGEF10L	rs6693036-G	0.048	3E-6	(TG )	0.04	[NR] mg/dL increase	Illumina [899892]	N
722	chr1	17996465	17996466	rs146330533	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	1p36.13	ARHGEF10L	rs146330533-?	NR	3E-7	(African)			Illumina [4404269] (imputed)	N
722	chr1	18007282	18007282	rs576106307	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	1p36.13	ARHGEF10L	rs576106307-C	NR	3E-7		1.07	[1.10-1.04]	Affymetrix [up to 73355677] (imputed)	N
722	chr1	18018856	18018857	rs12143113	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	1p36.13	ARHGEF10L	rs12143113-T	0.1739	9E-6		0.2061	[0.11-0.3] unit increase	NR [NR] (imputed)	N
722	chr1	18021857	18021858	rs2279817	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p36.13		rs2279817-?	NR	4E-8				NR [NR]	N
722	chr1	18021857	18021858	rs2279817	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p36.13		rs2279817-?	NR	2E-8				NR [NR]	N
722	chr1	18021857	18021858	rs2279817	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p36.13		rs2279817-?	NR	4E-8				NR [NR]	N
722	chr1	18021857	18021858	rs2279817	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p36.13		rs2279817-?	NR	2E-8				NR [NR]	N
722	chr1	18021857	18021858	rs2279817	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p36.13		rs2279817-?	NR	3E-8				NR [NR]	N
722	chr1	18021857	18021858	rs2279817	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1p36.13	NR	rs2279817-T	0.802	2E-6		0.020470746	[0.012-0.029] unit increase	Affymetrix [up to 6544775] (imputed)	N
722	chr1	18052644	18052645	rs260514	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.13	ACTL8	rs260514-?	NR	4E-6	(uridine diphosphate)	0.8888292	[0.51-1.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
723	chr1	18097444	18097445	rs111581773	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	1p36.13		rs111581773-C	0.030098	1E-7		1.8748993	NR	Affymetrix [7846216] (imputed)	N
723	chr1	18122008	18122009	rs4141983	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p36.13	NR	rs4141983-T	0.674	1E-8		0.0253398	[0.017-0.034] unit increase	NR [NR]	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	7E-9	(GGH)	0.09525	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	4E-9	(TXNRD1)	0.02733	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	3E-8	(MANF)	0.03409	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	3E-11	(KATNAL2)	0.05965	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	2E-8	(TKT)	0.8034	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18125272	18125273	rs115669506	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs115669506-C	0.0122	2E-8	(IPO5)	0.05027	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18130968	18130969	rs11203467	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	1p36.13		rs11203467-G	0.8844	7E-7	(East Asian)	1.13	[1.07-1.18]	Affymetrix, Illumina [up to 47000000] (imputed)	N
723	chr1	18135881	18135882	rs561698	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	1p36.13	ACTL8	rs561698-?	NR	4E-6				Illumina [659211]	N
723	chr1	18151140	18151141	rs12410884	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs12410884-C	0.05923	2E-8	(COQ9)	0.008118	NR unit increase	Illumina [1671387] (imputed)	N
723	chr1	18202180	18202181	rs7538231	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1p36.13	NR	rs7538231-A	NR	1E-7	(conditioned on rs1426654)	0.341084	[0.22-0.47] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
723	chr1	18204063	18204064	rs186911969	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	1p36.13	ACTL8, IGSF21	rs186911969-T	0.02	3E-7		3.65	[2.32-4.98] unit increase	Illumina [8437147] (imputed)	N
724	chr1	18230015	18230016	rs147606256	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	1p36.13	Intergenic	rs147606256-GC	0.943070667	3E-6		0.433729	[0.25-0.62] unit increase	Illumina [6969139] (imputed)	N
724	chr1	18244706	18244707	rs6686929	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.13	ACTL8	rs6686929-G	0.486	3E-6	(Ghrelin )	0.03	[NR] pg/100 uL increase	Illumina [899892]	N
724	chr1	18294351	18294352	rs1192553	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	1p36.13	ACTL8, IGSF21	rs1192553-G	0.25	1E-6		0.49	[0.29-0.69] unit increase	Illumina [at least 4710000] (imputed)	N
724	chr1	18294486	18294487	rs16861326	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p36.13	IGSF21	rs16861326-?	0.02	2E-6		17.85	[NR]	Affymetrix [512497]	N
725	chr1	18374724	18374725	rs4920415	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.13	NR	rs4920415-?		2E-6				Illumina [4322238] (imputed)	N
725	chr1	18390935	18390936	rs12137337	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.13	ACTL8	rs12137337-?	NR	2E-6	(LPE 18:2)	1.4929173	[0.88-2.1] unit increase	Affymetrix [at least 2500000] (imputed)	N
725	chr1	18434124	18434125	rs78116078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p36.13		rs78116078-?	NR	3E-8				NR [~ 8900000] (imputed)	N
725	chr1	18434124	18434125	rs78116078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p36.13	Intergenic	rs78116078-C	0.7208	3E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
725	chr1	18434124	18434125	rs78116078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.13		rs78116078-C	0.718	3E-8		0.0086	[0.0055-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
725	chr1	18434124	18434125	rs78116078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p36.13	Intergenic	rs78116078-C	0.718	1E-9	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
725	chr1	18436656	18436657	rs3820277	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p36.13		rs3820277-G	0.476	5E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
725	chr1	18436656	18436657	rs3820277	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p36.13	NR	rs3820277-T	0.526	3E-20		0.0100516	[0.0079-0.0122] unit decrease	NR [9732723] (imputed)	N
725	chr1	18436656	18436657	rs3820277	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p36.13	NR	rs3820277-T	0.526	2E-13		0.018836917	[0.014-0.024] unit decrease	NR [~ 10000000] (imputed)	N
725	chr1	18436656	18436657	rs3820277	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p36.13	NR	rs3820277-T	0.526	5E-8		0.00852278	[0.0055-0.0116] unit decrease	NR [9732723] (imputed)	N
725	chr1	18436656	18436657	rs3820277	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p36.13	NR	rs3820277-T	0.529	2E-13		0.0108759	[0.008-0.0138] unit increase	NR [9732723] (imputed)	N
725	chr1	18466054	18466055	rs61766495	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1p36.13	NR	rs61766495-?	NR	4E-6		0.1504	[0.087-0.214] unit increase	Illumina [~ 7800000] (imputed)	N
726	chr1	18487812	18487813	rs72944412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs72944412-T	0.0122	8E-9	(TOMM70)	0.0214	NR unit increase	Illumina [1671387] (imputed)	N
726	chr1	18525714	18525715	rs112933411	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs112933411-A	0.03484	1E-9	(SH3BGRL3)	0.01145	NR unit increase	Illumina [1671387] (imputed)	N
726	chr1	18550836	18550837	rs1913592	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	1p36.13	IGSF21	rs1913592-C	0.279	1E-6		3.346	[2.06-5.435]	Illumina [7585874] (imputed)	N
726	chr1	18554669	18554670	rs3738088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs3738088-T	0.01916	6E-9	(HNRNPH3)	0.06309	NR unit increase	Illumina [1671387] (imputed)	N
726	chr1	18566850	18566851	rs2883821	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1p36.13	IGSF21	rs2883821-C	0.802	1E-15		0.23	[0.18-0.29] unit increase	Affymetrix [339439]	N
726	chr1	18566850	18566851	rs2883821	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	1p36.13	NR	rs2883821-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
727	chr1	18630105	18630106	rs1533345	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	1p36.13	IGSF21	rs1533345-?	NR	9E-6				Illumina [622468]	N
727	chr1	18676960	18676961	rs555115	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Turicibacter id.2162)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1p36.13		rs555115-A	NR	3E-8		5.522451	z score increase	Affymetrix, Illumina [NR] (imputed)	N
727	chr1	18678169	18678170	rs16861827	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	1p36.13	IGSF21	rs16861827-T	NR	4E-7		1.7	[1.39-2.09]	NR [7738399] (imputed)	N
728	chr1	18793519	18793520	rs3007727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.13		rs3007727-G	NR	1E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
728	chr1	18793519	18793520	rs3007727	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p36.13	KLHDC7A	rs3007727-A	0.175432	1E-11		0.00462388	[0.0033-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
728	chr1	18795254	18795255	rs3007729	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1p36.13	KLHDC7A, IGSF21	rs3007729-T	0.65	5E-6		1.35	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
728	chr1	18801855	18801856	rs202229006	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	1p36.13	KLHDC7A	rs202229006-TG	0.88	9E-6		2.2222223		Affymetrix [at least 730985] (imputed)	N
728	chr1	18802521	18802522	rs2356240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.13		rs2356240-G	NR	7E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
728	chr1	18807338	18807339	rs2992756	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p36.13		rs2992756-T	NR	5E-17		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
728	chr1	18807338	18807339	rs2992756	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p36.13	KLHDC7A	rs2992756-T	0.49	2E-15	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
728	chr1	18807952	18807953	rs11261022	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p36.13	KLHDC7A	rs11261022-A	0.3608	2E-19		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
728	chr1	18808291	18808292	rs2992753	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.13	KLHDC7A	rs2992753-A	0.646	5E-9		0.0113	[0.0076-0.015] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
728	chr1	18809915	18809916	rs12061708	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p36.13	KLHDC7A	rs12061708-A	0.2936	1E-18		0.0026	[0.002-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
728	chr1	18811120	18811121	rs35259167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.13	NR	rs35259167-A	NR	8E-13		0.0257	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
728	chr1	18811120	18811121	rs35259167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.13	NR	rs35259167-A	NR	9E-14		0.0269	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
728	chr1	18812175	18812176	rs872355	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1p36.13	KLHDC7A	rs872355-A	0.35	5E-8		0.302	[0.19-0.41] unit decrease	Affymetrix [NR] (imputed)	N
728	chr1	18812175	18812176	rs872355	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1p36.13	KLHDC7A	rs872355-A	0.337	2E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
728	chr1	18816878	18816879	rs4501813	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1p36.13	NR	rs4501813-G	0.939503	8E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
729	chr1	18903901	18903902	rs2816062	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	1p36.13	KLHDC7A, PAX7	rs2816062-G	0.42	9E-6	(men)	0.091	[0.05-0.132] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
729	chr1	18951984	18951985	rs7541797	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional smoking interaction (2df)	321 European ancestry exposed trios, 875 European ancestry unexposed trios, 42 Asian ancestry exposed trios, 1,224 Asian ancestry unexposed trios, 79 Latin American exposed trios, 434 Latin American unexposed trios	NA	1p36.13	PAX7	rs7541797-?	NR	6E-8				Illumina [up to 6762077] (imputed)	N
729	chr1	18951984	18951985	rs7541797	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional multivitamin use interaction (2df)	661 European ancestry exposed trios, 328 European ancestry unexposed trios, 293 Asian ancestry exposed trios, 805 Asian ancestry unexposed trios, 260 Latin American exposed trios, 140 Latin American unexposed trios	NA	1p36.13	PAX7	rs7541797-?	NR	9E-6				Illumina [up to 6762077] (imputed)	N
729	chr1	18951984	18951985	rs7541797	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional alcohol use interaction (2df)	419 European ancestry exposed trios, 681 European ancestry unexposed trios, 40 Asian ancestry exposed trios, 1,213 Asian ancestry unexposed trios, 103 Latin American exposed trios, 407 Latin American unexposed trios	NA	1p36.13	PAX7	rs7541797-?	NR	3E-6				Illumina [up to 6762077] (imputed)	N
729	chr1	18962094	18962095	rs1934057	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	1p36.13	PAX7	rs1934057-?	NR	3E-8	(EA)	0.0762	[0.049-0.103] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
729	chr1	18962094	18962095	rs1934057	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p36.13	NR	rs1934057-T	0.4944	3E-12	(Lingual)	12.218551	[8.79-15.65] unit decrease	Affymetrix, Illumina [NR]	N
729	chr1	18972775	18972776	rs9439713	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1p36.13	PAX7	rs9439713-?	NR	4E-10		1.3	[1.14-1.49] (GENEVA cohort)	Illumina [6090031] (imputed)	N
729	chr1	18972775	18972776	rs9439713	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1p36.13	PAX7	rs9439713-?	NR	6E-13		1.481	[1.27-1.73] (GENEVA cohort)	Illumina [6090031] (imputed)	N
729	chr1	18976488	18976489	rs9439714	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	1p36.13	PAX7	rs9439714-C		3E-8		0.15	[0.072-0.228] unit increase	Illumina [NR] (imputed)	N
729	chr1	18976488	18976489	rs9439714	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1p36.13	PAX7	rs9439714-?	NR	5E-7	(EA)	1.33	[1.2-1.47]	Illumina [6090031] (imputed)	N
729	chr1	18976488	18976489	rs9439714	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1p36.13	PAX7	rs9439714-?	NR	8E-10	(EA)	1.47	[1.31-1.65]	Illumina [6090031] (imputed)	N
729	chr1	18979319	18979320	rs6695765	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.13		rs6695765-T	0.44	6E-13		7.2	z score increase	Affymetrix [9061022] (imputed)	N
729	chr1	18979873	18979874	rs742071	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	3,566 European ancestry individuals	4,680 European ancestry individuals	1p36.13		rs742071-T	0.403252944	1E-15				Illumina [7417619] (imputed)	N
729	chr1	18979873	18979874	rs742071	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	1p36.13	NR	rs742071-?	NR	3E-11		0.3184	[0.22-0.41] unit increase	NR [7618724] (imputed)	N
729	chr1	18979873	18979874	rs742071	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	1p36.13		rs742071-?		4E-6				Illumina [NR]	N
729	chr1	18979873	18979874	rs742071	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1p36.13	PAX7	rs742071-A	0.04	4E-7		1.4		Illumina [803202]	N
729	chr1	18979873	18979874	rs742071	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p36.13	PAX7	rs742071-T	NR	7E-9	(Meta-All, NSCL/P)	1.316	[1.126-1.537]	NR [497084]	N
729	chr1	18987882	18987883	rs2282710	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.13		rs2282710-T	0.43	8E-12		6.84	z score increase	Affymetrix [9061022] (imputed)	N
729	chr1	18987882	18987883	rs2282710	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.13	NR	rs2282710-T	0.4753	1E-14				NR [9056863] (imputed)	N
729	chr1	18989574	18989575	rs1339063	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	1p36.13		rs1339063-T	0.33	7E-8				Illumina [6761961] (imputed)	N
729	chr1	18990211	18990212	rs2236836	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p36.13	PRDM16	rs2236836-?		9E-9				NR [7428630] (imputed)	N
729	chr1	18990217	18990218	rs12410669	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	1p36.13		rs12410669-?	NR	4E-6				Illumina [8703729] (imputed)	N
729	chr1	18990217	18990218	rs12410669	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	1p36.13		rs12410669-?	NR	4E-9				Illumina [8703729] (imputed)	N
729	chr1	18990250	18990251	rs2236835	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p36.13	PAX7	rs2236835-A	0.04	8E-6		0.128	[0.071-0.185] unit decrease	Affymetrix, Illumina [557887] (imputed)	N
729	chr1	18991003	18991004	rs742069	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.13	NR	rs742069-A	0.4759	4E-8				NR [9056863] (imputed)	N
730	chr1	19005487	19005488	rs116567327	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.13	NR	rs116567327-C	0.01394	2E-8	(HSD17B4)	1.379	NR unit increase	Illumina [1671387] (imputed)	N
730	chr1	19032271	19032272	rs2236824	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	1p36.13	PAX7	rs2236824-?	NR	2E-6	(SF10)			Affymetrix [5476100] (imputed)	N
730	chr1	19101764	19101765	rs4920343	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	1p36.13	PAX7, TAS1R2	rs4920343-G	0.87	7E-7		2.0	[1.52-2.63]	Illumina [8300000] (imputed)	N
730	chr1	19108548	19108549	rs6669119	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	1p36.13	PAX7	rs6669119-T	NR	1E-6	(All)	0.14	[0.018-0.262] unit decrease	Illumina [6900000] (imputed)	N
730	chr1	19109755	19109756	rs188344082	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs188344082-?	NR	1E-6		9.287	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19110007	19110008	rs113459855	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs113459855-?	NR	2E-6		8.997	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19110473	19110474	rs74056619	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056619-?	NR	3E-6		8.702	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19110526	19110527	rs74056620	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056620-?	NR	3E-6		8.702	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19110561	19110562	rs74056621	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056621-?	NR	3E-6		8.702	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19110653	19110654	rs74056622	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056622-?	NR	3E-6		8.702	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19111077	19111078	rs74056623	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056623-?	NR	6E-7		9.27	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19116499	19116500	rs74056624	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p36.13	NR	rs74056624-?	NR	1E-6		9.318	NR unit increase	Affymetrix [at least 600000] (imputed)	N
730	chr1	19120376	19120377	rs6694270	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nitrofurantoin)	64 European ancestry cases, 10,588 European ancestry controls	NA	1p36.13		rs6694270-?		2E-7		2.59	1.81-3.71	Illumina [505740] (imputed)	N
731	chr1	19139516	19139517	rs12063142	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	1p36.13	TAS1R2	rs12063142-?	NR	5E-7				Illumina [495715] (imputed)	N
731	chr1	19167370	19167371	rs3935570	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.13	ALDH4A1	rs3935570-?	NR	2E-7	(trimethylamine N oxide)	0.2271199	[0.14-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
731	chr1	19201918	19201919	rs6695033	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	1p36.13	ALDH4A1	rs6695033-?		3E-6		2.71	[NR]	Illumina [803323]	N
731	chr1	19206333	19206334	rs28441017	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	1p36.13	ALDH4A1, TAS1R2	rs28441017-G	0.827	9E-6		0.086	[0.049-0.123] unit decrease	Illumina [6150213] (imputed)	N
731	chr1	19234133	19234134	rs28530674	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	1p36.13	NR	rs28530674-?	0.04	3E-7		1.826	[NR]	Illumina [1468075]	N
731	chr1	19237106	19237107	rs2024724	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	1p36.13	NR	rs2024724-?	NR	4E-7	(male)	0.55	[0.33-0.77] unit increase	Illumina [7411206] (imputed)	N
732	chr1	19276339	19276340	rs28367561	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.13		rs28367561-G	0.17	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
732	chr1	19321494	19321495	rs16862426	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	1p36.13	intergenic	rs16862426-C	0.03	9E-8			[NR]	Affymetrix [398699]	N
732	chr1	19332075	19332076	rs7523455	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	1p36.13	intergenic	rs7523455-A	0.19	2E-7			[NR]	Affymetrix [398699]	N
732	chr1	19349280	19349281	rs28829049	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.13	NR	rs28829049-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
732	chr1	19385771	19385772	rs77894461	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	1p36.13		rs77894461-T	0.051	8E-6		2.7		Illumina [5409651] (imputed)	N
732	chr1	19385771	19385772	rs77894461	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	1p36.13		rs77894461-T	0.051	3E-6		2.2		Illumina [5411567] (imputed)	N
732	chr1	19386584	19386585	rs12123383	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	1p36.13	intergenic	rs12123383-?	NR	4E-6	(SF1)			Affymetrix [5476100] (imputed)	N
732	chr1	19389541	19389542	rs74921670	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	1p36.13	NR	rs74921670-?	NR	3E-13				Affymetrix, Illumina [6211016] (imputed)	N
732	chr1	19389541	19389542	rs74921670	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals	NA	1p36.13	NR	rs74921670-A	0.0182	9E-14		634.602	[467.74-801.47] unit increase	Affymetrix, Illumina [7567618] (imputed)	N
733	chr1	19468174	19468175	rs781088515	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	1p36.13	UBR4	rs781088515-C	0.0009	3E-6	(Icelandic)	1.12	NR SD units decrease	Illumina [21568490] (imputed)	N
734	chr1	19564512	19564513	rs144713581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p36.13		rs144713581-A	NR	3E-13		0.8951	[0.65-1.14] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
734	chr1	19568971	19568972	rs710865	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	1p36.13	KIAA0090, MRT04, AKR7L	rs710865-?	0.38	1E-7				Illumina [448293]	N
734	chr1	19600537	19600538	rs144376466	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	AKR7A2	rs144376466-C	0.9115625	2E-24	(AKR7A2, 4188_1_2)	0.43593797	[0.35-0.52] unit increase	Illumina [> 1000000] (imputed)	N
734	chr1	19611486	19611487	rs59348345	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	1p36.13	AKR7A3, UBR4, KIAA0090, MRTO4, AKR7L, AKR7A2, PQLC2, CAPZB	rs59348345-T	0.08	5E-7		0.88	[0.53-1.23] unit increase	Illumina [8257341] (imputed)	N
734	chr1	19614927	19614928	rs117022236	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p36.13	AKR7A3	rs117022236-A	0.995	4E-6	(liability model)	0.63	[0.36-0.9] unit decrease	NR [19725427] (imputed)	N
734	chr1	19626284	19626285	rs143187056	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKR7A2	5,363 Icelandic ancestry individuals	NA	1p36.13		rs143187056-T	0.08327	1E-41		0.450877	[0.39-0.52] unit decrease	Illumina [7506463] (imputed)	N
734	chr1	19630142	19630143	rs116348652	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	1p36.13	NR	rs116348652-G	0.959	3E-8		1.8989	[1.23-2.57] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
734	chr1	19634963	19634964	rs859208	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1p36.13	AKR7A2, PQLC2	rs859208-G	0.069	2E-17		0.42	[0.33-0.52] unit decrease	Affymetrix [339439]	N
734	chr1	19635010	19635011	rs1043657	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	1p36.13	AKR7A2	rs1043657-T	0.09	2E-26	(4-hydroxyglutamate,  5-hydroxylysine,  X-24462)	0.015	[0.013-0.017] unit decrease	Illumina [7750367] (imputed)	N
734	chr1	19635010	19635011	rs1043657	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p36.13	AKR7A2	rs1043657-T	0.09	2E-412	(X - 24462)	1.114	[1.06-1.16] unit increase	Illumina [7750367] (imputed)	N
734	chr1	19638308	19638309	rs2227295	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKR7A2	5,363 Icelandic ancestry individuals	NA	1p36.13		rs2227295-A	0.2486	2E-9		0.131471	[0.089-0.174] unit decrease	Illumina [7506463] (imputed)	N
734	chr1	19638882	19638883	rs2473808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p36.13		rs2473808-C	NR	4E-8		0.0498	[0.032-0.068] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
734	chr1	19638882	19638883	rs2473808	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p36.13	PQLC2	rs2473808-T	0.33565	9E-9		0.055621754	[0.037-0.075] unit increase	Affymetrix [7288503] (imputed)	N
734	chr1	19638882	19638883	rs2473808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.13		rs2473808-?	NR	1E-11				NR [~ 8900000] (imputed)	N
735	chr1	19682428	19682429	rs214346	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	1p36.13	CAPZB	rs214346-A	NR	6E-7	(EA)	0.72	[0.63-0.82]	Illumina [629283] (imputed)	N
735	chr1	19692696	19692697	rs214310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.13	CAPZB	rs214310-C	0.346579	2E-10		0.0149997305	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
735	chr1	19693127	19693128	rs214321	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.13	NR	rs214321-?	NR	2E-9				Affymetrix [NR]	N
735	chr1	19706088	19706089	rs72651487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.13		rs72651487-?	NR	5E-16				NR [~ 8900000] (imputed)	N
735	chr1	19709917	19709918	rs12730973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	CAPZB	rs12730973-A	NR	8E-11		0.0199713	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
735	chr1	19709917	19709918	rs12730973	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.13	CAPZB	rs12730973-A	0.4533	1E-6		0.0307	[0.018-0.043] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
735	chr1	19716795	19716796	rs4912082	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 10)	3,566 European ancestry individuals	4,680 European ancestry individuals	1p36.13		rs4912082-C	0.295709761	3E-8				Illumina [7417619] (imputed)	N
735	chr1	19717961	19717961	rs777885759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	CAPZB	rs777885759-C	NR	5E-8		0.0198033	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
735	chr1	19718823	19718824	rs7667	22482804	Ellinghaus D	2012-04-06	Am J Hum Genet	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	1p36.13	CAPZB	rs7667-?	NR	8E-6	(opposite-effect analysis)	1.11	[NR]	Affymetrix, Illumina, Perlegen [1116213] (imputed)	N
735	chr1	19720091	19720092	rs7529705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.13	CAPZB	rs7529705-A	NR	3E-10		0.0197435	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
735	chr1	19724323	19724323	rs34032610	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.13		rs34032610-?	NR	6E-19		0.0189251	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
735	chr1	19729086	19729087	rs4912085	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.13	CAPZB	rs4912085-G	0.422485	2E-28		0.0205814	[0.017-0.024] unit increase	NR [13737936] (imputed)	N
735	chr1	19747102	19747103	rs12027702	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p36.13	CAPZB	rs12027702-T	0.327228599851699	4E-39		0.0677	[0.058-0.078] SD increase	Illumina [22400000] (imputed)	N
735	chr1	19749401	19749402	rs4912090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.13		rs4912090-?	NR	6E-23				NR [~ 8900000] (imputed)	N
735	chr1	19749549	19749550	rs71512947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.13		rs71512947-G	NR	1E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
735	chr1	19749549	19749550	rs71512947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.13	CAPZB	rs71512947-G	0.344409	4E-14		0.017874911	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
735	chr1	19749549	19749550	rs71512947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs71512947-G	0.404836	5E-14				Affymetrix, Illumina [24588908] (imputed)	N
735	chr1	19749551	19749551	rs11456569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.13	CAPZB	rs11456569-CT	0.3455	4E-11		0.02539743	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr1	19755029	19755030	rs1472565	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.13	CAPZB	rs1472565-T	0.5333	9E-13		0.0134	[0.0097-0.0171] unit increase	Affymetrix [18391927] (imputed)	N
735	chr1	19755029	19755030	rs1472565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.13		rs1472565-?	NR	1E-9				NR [~ 8900000] (imputed)	N
735	chr1	19755029	19755030	rs1472565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs1472565-?	NR	2E-31				NR [~ 8900000] (imputed)	N
735	chr1	19761428	19761429	rs12136530	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	1p36.13	CAPZB	rs12136530-A	0.793	3E-6		0.16	[0.091-0.229] unit increase	Illumina [6391392] (imputed)	N
735	chr1	19765517	19765518	rs12045440	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	CAPZB	rs12045440-T	0.664	3E-14	(thyroid volume)	0.067	[0.05-0.09] unit increase	Affymetrix [2748910] (imputed)	N
735	chr1	19765517	19765518	rs12045440	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	CAPZB	rs12045440-T	0.664	2E-11	(goiter)	1.38	[1.26-1.51]	Affymetrix [2748910] (imputed)	N
735	chr1	19767813	19767814	rs12407089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p36.13		rs12407089-C	NR	8E-11		0.1648	[0.12-0.21] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
735	chr1	19768447	19768448	rs58416206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.13	NR	rs58416206-A	0.39278	3E-14		0.014214	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
736	chr1	19827779	19827780	rs6683419	24852370	Zhan M	2014-05-22	Hum Mol Genet	Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.	Serum thyroid-stimulating hormone levels	1,346 Han Chinese ancestry individuals	3,235 She Chinese ancestry individuals	1p36.13	MINOS1, NBL1, CAPZB	rs6683419-G	0.265	3E-7		0.027	[NR] unit increase	Illumina [8503852] (imputed)	N
736	chr1	19836220	19836221	rs75491569	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	1p36.13	CAPZB	rs75491569-T	0.16	9E-11		0.238	[0.17-0.31] unit decrease	Affymetrix, Illumina [5965951] (imputed)	N
736	chr1	19839114	19839115	rs12138950	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p36.13	CAPZB, LOC105378614	rs12138950-C	0.15368526875987	2E-72		0.1159	[0.1-0.13] SD decrease	Illumina [22400000] (imputed)	N
736	chr1	19839114	19839115	rs12138950	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	1p36.13	CAPZB	rs12138950-A	0.85	6E-10		0.258	[0.18-0.34] unit decrease	Affymetrix, Illumina [5965951] (imputed)	N
736	chr1	19839114	19839115	rs12138950	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	1p36.13	CAPZB, MINOS1	rs12138950-?	NR	8E-9		1.1074197	[1.07-1.15]	Illumina [13676411] (imputed)	N
736	chr1	19839114	19839115	rs12138950	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	CAPZB	rs12138950-A	0.847	3E-18	(thyroid volume)	0.102	[0.08-0.12] unit decrease	Affymetrix [2748910] (imputed)	N
736	chr1	19841173	19841174	rs10799824	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p36.13	CAPZB	rs10799824-A	0.161	4E-21	(TSH)	0.113	[0.089-0.137] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr1	19841173	19841174	rs10799824	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p36.13	CAPZB	rs10799824-A	0.161	3E-14	(TSH - Females)	0.123	[0.092-0.154] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr1	19841173	19841174	rs10799824	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p36.13	CAPZB	rs10799824-A	0.161	1E-8	(TSH - Males)	0.099	[0.066-0.132] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr1	19843353	19843354	rs10917468	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	1p36.13	CAPZB	rs10917468-C	0.217	1E-14	(goiter)	1.52	[1.37-1.69]	Affymetrix [2748910] (imputed)	N
736	chr1	19845278	19845279	rs12410532	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	1p36.13	CAPZB	rs12410532-T	0.164	9E-9		0.09	[0.059-0.121] unit decrease	Illumina [at least 9558836] (imputed)	N
736	chr1	19861105	19861106	rs10917477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p36.13		rs10917477-G	NR	2E-10		0.064	[0.044-0.084] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
736	chr1	19861105	19861106	rs10917477	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.13	CAPZB	rs10917477-A	0.520677	1E-17		0.0157776	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
736	chr1	19861105	19861106	rs10917477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.13		rs10917477-?	NR	2E-10				NR [~ 8900000] (imputed)	N
736	chr1	19861105	19861106	rs10917477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.13		rs10917477-?	NR	2E-14				NR [~ 8900000] (imputed)	N
736	chr1	19861105	19861106	rs10917477	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.13		rs10917477-?	NR	5E-12		0.0138652	[0.0098-0.0179] unit decrease	Affymetrix [20259828] (imputed)	N
736	chr1	19861105	19861106	rs10917477	22494929	Rawal R	2012-04-16	Hum Mol Genet	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	1p36.13	CAPZB	rs10917477-A	0.511	2E-8		0.058	[0.038-0.078] unit decrease	Affymetrix, Illumina [2524918] (imputed)	N
736	chr1	19873554	19873555	rs4244006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.13		rs4244006-C	NR	1E-16		0.0112	[0.0087-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
737	chr1	19925481	19925482	rs76193741	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.13	NR	rs76193741-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
737	chr1	19925758	19925759	rs12024554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.13		rs12024554-T	NR	9E-9		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
737	chr1	19925758	19925759	rs12024554	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p36.13	NA	rs12024554-T	0.2346	1E-10		0.0149	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
737	chr1	19934899	19934900	rs61740466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.13		rs61740466-?	NR	3E-8				NR [~ 8900000] (imputed)	N
737	chr1	19934899	19934900	rs61740466	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.13	NA	rs61740466-A	0.2346	2E-10		0.0142	[0.0099-0.0185] unit decrease	NR [~ 27400000] (imputed)	N
737	chr1	19947255	19947256	rs10489858	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	1p36.13	C1orf151	rs10489858-C		9E-6		6.381	unit decrease	Illumina [635970]	N
737	chr1	19961678	19961679	rs10917502	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p36.13		rs10917502-?	NR	5E-20				NR [9705931] (imputed)	N
737	chr1	19964097	19964098	rs78170481	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.13	NR	rs78170481-T	0.2387	2E-16				NR [9056863] (imputed)	N
737	chr1	19964698	19964699	rs12408388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p36.13		rs12408388-T	0.1459	2E-8		0.0158741	[0.01-0.021] unit decrease	Illumina [13479295] (imputed)	N
737	chr1	19968057	19968058	rs12408663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	1p36.13		rs12408663-C	0.23	9E-7				NR [13131314] (imputed)	N
737	chr1	19968057	19968058	rs12408663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.13		rs12408663-C	0.23	8E-61		16.45	z score increase	Affymetrix [9061022] (imputed)	N
737	chr1	19968057	19968058	rs12408663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.13		rs12408663-C	0.23	3E-16		8.18	z score increase	Affymetrix [9061022] (imputed)	N
737	chr1	19968057	19968058	rs12408663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.13		rs12408663-C	0.23	1E-25		10.47	z score increase	Affymetrix [9061022] (imputed)	N
737	chr1	19968057	19968058	rs12408663	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.13	NR	rs12408663-C	0.2316	1E-17				NR [9056863] (imputed)	N
737	chr1	19968057	19968058	rs12408663	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.13	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs12408663-?		3E-16				NR [7428630] (imputed)	N
737	chr1	19968057	19968058	rs12408663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.13		rs12408663-?	NR	6E-15				NR [~ 8900000] (imputed)	N
737	chr1	19968057	19968058	rs12408663	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	NBL1	rs12408663-T	0.78796875	2E-7	(NBL1, 2944_66_2)	0.14517097	[0.09-0.2] unit increase	Illumina [> 1000000] (imputed)	N
737	chr1	19973919	19973920	rs2854108	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p36.13	CROCC, MFAP2, ATP13A2, SDHB	rs2854108-?		3E-14				NR [7428630] (imputed)	N
737	chr1	19974396	19974397	rs372271081	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	1p36.13	NBL1	rs372271081-?	NR	7E-7		5.882353		Affymetrix [8800000] (imputed)	N
737	chr1	19976781	19976782	rs1115163	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.13	NR	rs1115163-G	0.47549	2E-10		0.011645	[0.008-0.0152] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
737	chr1	19978894	19978895	rs753612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.13	NR	rs753612-G	0.589191	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
737	chr1	19978894	19978895	rs753612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.13	NR	rs753612-G	0.611866	4E-13		0.014079	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
737	chr1	19981022	19981023	rs7546665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.13		rs7546665-?	NR	5E-10				NR [~ 8900000] (imputed)	N
737	chr1	19981450	19981451	rs3828101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.13	NBL1, MINOS1-NBL1	rs3828101-G	0.494508	4E-10		0.013783718	[0.0095-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
737	chr1	19987782	19987783	rs6691624	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1p36.13	NR	rs6691624-?	NR	4E-6				Illumina [7427422] (imputed)	N
737	chr1	19989204	19989205	rs2050122	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	1p36.13	NR	rs2050122-C	0.2	4E-9		0.033	[0.022-0.044] unit increase	Affymetrix [at least 12428592] (imputed)	N
737	chr1	19989204	19989205	rs2050122	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1p36.13	HTR6	rs2050122-T	0.2	3E-6		1.06	[1.04-1.08]	NR [16760980] (imputed)	N
737	chr1	19989204	19989205	rs2050122	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1p36.13	HTR6	rs2050122-T	0.2	1E-8		0.028	[0.018-0.038] unit increase	NR [16760980] (imputed)	N
737	chr1	19989204	19989205	rs2050122	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	1p36.13	HTR6	rs2050122-C	0.8	8E-7		1.12	[1.07-1.17]	Affymetrix [73355677] (imputed)	N
737	chr1	19989204	19989205	rs2050122	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	1p36.13	HTR6	rs2050122-C	0.8	5E-8		0.031	[0.019-0.043] unit increase	Affymetrix [~ 73355677] (imputed)	N
737	chr1	19992065	19992066	rs10917509	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	1p36.13	NR	rs10917509-T	0.365	8E-10		1.0767	[1.05-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
737	chr1	20006886	20006887	rs10917513	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.13	HTR6, TMCO4	rs10917513-C	0.35240000000000005	3E-15		1.0305029		Affymetrix [11880941] (imputed)	N
737	chr1	20006886	20006887	rs10917513	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.13	HTR6TMCO4	rs10917513-C	0.35240000000000005	3E-15		1.0313823		Affymetrix [11880941] (imputed)	N
737	chr1	20011711	20011712	rs4912144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p36.13		rs4912144-?	NR	2E-9				NR [~ 8900000] (imputed)	N
737	chr1	20014826	20014827	rs7543480	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.13		rs7543480-T	0.3447	7E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
737	chr1	20018076	20018077	rs11582254	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1p36.13	NR	rs11582254-G	0.58	9E-7		1.1627907	[NR]	Illumina [803202]	N
737	chr1	20019524	20019525	rs115078773	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p36.13	TMCO4	rs115078773-A	0.992	7E-6	(liability model)	0.44	[0.24-0.64] unit decrease	NR [19725427] (imputed)	N
737	chr1	20023832	20023833	rs4912145	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	1p36.13		rs4912145-?	NR	9E-6		0.60896164	unit increase	Illumina [NR] (imputed)	N
738	chr1	20137713	20137714	rs4655215	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.13	RNF186	rs4655215-?	NR	8E-20	(subset analysis)			Illumina [130052]	N
738	chr1	20140035	20140036	rs1317209	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p36.13	RNF186, OTUD3, PLA2G2E	rs1317209-T	NR	2E-10		1.34	[NR]	Illumina [266047]	N
738	chr1	20141059	20141060	rs36095412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.13		rs36095412-A	NR	6E-12		0.2397	[0.17-0.31] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
738	chr1	20141059	20141060	rs36095412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	1p36.13		rs36095412-?	NR	1E-20		0.302585	[0.24-0.37] unit increase	NR [9800000] (imputed)	N
738	chr1	20141059	20141060	rs36095412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.13	NR	rs36095412-A	NR	5E-20		0.345	[0.27-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
738	chr1	20141059	20141060	rs36095412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.13	NR	rs36095412-A	NR	2E-21		0.359	[0.28-0.43] unit increase	Affymetrix [9000000] (imputed)	N
738	chr1	20142865	20142866	rs3806308	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.13	RNF186	rs3806308-?	NR	1E-24	(subset analysis)			Illumina [130052]	N
738	chr1	20142865	20142866	rs3806308	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.13	NR	rs3806308-G	0.62	6E-39	(EA)	1.1850245		Affymetrix, Illumina [~ 9000000] (imputed)	N
738	chr1	20142865	20142866	rs3806308	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p36.13	RNF186, OTUD3, PLA2G2E	rs3806308-G	NR	3E-8		1.15		Illumina [266047]	N
738	chr1	20142865	20142866	rs3806308	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p36.13	RNF186	rs3806308-?	0.63	7E-9		1.28		Illumina [280748]	N
738	chr1	20158240	20158241	rs4509550	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p36.13	NR	rs4509550-T	0.6	4E-9		0.011	[0.0073-0.0147] unit increase	NR [NR]	N
738	chr1	20171513	20171514	rs10737481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1p36.13		rs10737481-G	NR	5E-18		0.1682	[0.13-0.21] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
738	chr1	20171513	20171514	rs10737481	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	1p36.13		rs10737481-?	NR	3E-19		0.077	NR unit increase	NR [5896510] (imputed)	N
738	chr1	20171859	20171860	rs6426833	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	1p36.13		rs6426833-?	NR	3E-18		0.053	NR unit decrease	NR [6490614] (imputed)	N
738	chr1	20171859	20171860	rs6426833	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p36.13	RNF186, OTUD3	rs6426833-?		3E-42				Illumina [9578670] (imputed)	N
738	chr1	20171859	20171860	rs6426833	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p36.13	RNF186, OTUD3	rs6426833-?		1E-19				Illumina [9725440] (imputed)	N
738	chr1	20171859	20171860	rs6426833	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.13	intergenic	rs6426833-?	NR	7E-62	(subset analysis)			Illumina [130052]	N
738	chr1	20171859	20171860	rs6426833	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.13	NR	rs6426833-A	0.54	3E-76	(EA)	1.2616084		Affymetrix, Illumina [~ 9000000] (imputed)	N
738	chr1	20171859	20171860	rs6426833	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.13	NR	rs6426833-?	NR	1E-55	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
738	chr1	20171859	20171860	rs6426833	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.13	NR	rs6426833-A	0.54	3E-36	(EA)	1.1322339		Affymetrix, Illumina [~ 9000000] (imputed)	N
738	chr1	20171859	20171860	rs6426833	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p36.13	intergenic	rs6426833-A	0.542	2E-68		1.265	[1.221-1.31]	Affymetrix, Illumina [1230000] (imputed)	N
738	chr1	20171859	20171860	rs6426833	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.13	intergenic	rs6426833-A	0.54	4E-35		1.3	[1.25-1.35]	Affymetrix, Illumina [~ 1100000] (imputed)	N
738	chr1	20171859	20171860	rs6426833	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p36.13	RNF186, OTUD3, PLA2G2E	rs6426833-A	NR	2E-21		1.3	[NR]	Illumina [266047]	N
738	chr1	20171859	20171860	rs6426833	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p36.13	OTUD3, PLA2G2E	rs6426833-?	NR	2E-11				Affymetrix [NR]	N
738	chr1	20171859	20171860	rs6426833	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p36.13	OTUD3, PLA2G2E	rs6426833-G	0.54	5E-13		1.37		Illumina [280748]	N
738	chr1	20173857	20173858	rs10737482	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1p36.13	NR	rs10737482-T	0.39	3E-16		0.86	[NR]	NR [8546065] (imputed)	N
739	chr1	20191435	20191436	rs4654897	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2E	rs4654897-C	0.26	7E-33		0.65	[0.53-0.77] unit increase	Illumina [796141]	N
739	chr1	20200989	20200990	rs4654903	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	1p36.13	RNF186, OTUD3, PLA2G2E	rs4654903-?	0.75	7E-9		1.56	[1.35-1.82]	Illumina [581060]	N
739	chr1	20201778	20201779	rs10916661	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	1p36.13	NR	rs10916661-A	0.326	7E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	4.426	[NR]	Affymetrix [> 650000] (imputed)	N
739	chr1	20227722	20227723	rs4654925	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	1p36.13	OTUD3	rs4654925-G	0.52	9E-22		1.41	[1.30-1.54]	Affymetrix [1897764] (imputed)	N
739	chr1	20236730	20236731	rs17401735	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	OTUD3	rs17401735-G	0.18	1E-9		0.37	[0.23-0.51] unit decrease	Illumina [796141]	N
739	chr1	20243315	20243316	rs138347004	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	1p36.13		rs138347004-?	NR	3E-7		0.04441	unit decrease	Illumina [at least 2500000] (imputed)	N
739	chr1	20250729	20250730	rs2233688	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2E	rs2233688-C	0.11	9E-17		0.63	[0.45-0.81] unit increase	Illumina [796141]	N
739	chr1	20281504	20281505	rs1774119	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1p36.13		rs1774119-T	NR	5E-6		0.81643	[0.47-1.16] unit decrease	Illumina [NR] (imputed)	N
739	chr1	20285486	20285487	rs12408941	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2E, PLA2G2A	rs12408941-A	0.12	2E-31		0.79	[0.63-0.95] unit decrease	Illumina [796141]	N
739	chr1	20292005	20292006	rs12023742	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2E, PLA2G2A	rs12023742-A	0.38	4E-138		1.15	[1.05-1.25] unit decrease	Illumina [796141]	N
739	chr1	20292377	20292378	rs13375942	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2E, PLA2G2A	rs13375942-C	0.26	6E-79		0.99	[0.87-1.11] unit decrease	Illumina [796141]	N
739	chr1	20294499	20294500	rs10799599	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1p36.13	NR	rs10799599-?	NR	3E-17	(NPS-PLA2)			Illumina [~ 4000000] (imputed)	N
739	chr1	20294499	20294500	rs10799599	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	1p36.13	PLA2G2A	rs10799599-C	0.62	1E-6		1.26	[1.15-1.39]	Affymetrix, Illumina [NR] (imputed)	N
739	chr1	20301780	20301781	rs3767221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2G2A	5,367 Icelandic ancestry individuals	NA	1p36.13		rs3767221-C	0.417	2E-92		0.376121	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
739	chr1	20304856	20304857	rs2307246	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2A	rs2307246-T	0.23	3E-441		2.27	[2.15-2.39] unit increase	Illumina [796141]	N
739	chr1	20304856	20304857	rs2307246	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.13	NR	rs2307246-A	0.227	8E-367	(Phospholipase A2, membrane associated, PLA2G2A.2692.74.2)	0.99	[0.95-1.03] unit increase	Affymetrix [10572788] (imputed)	N
739	chr1	20304925	20304926	rs4744	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.13	PLA2G2A	rs4744-G	0.76609375	2E-111	(PLA2G2A, 2692_74_2)	0.63069034	[0.58-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
739	chr1	20305064	20305065	rs10732279	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	1p36.13	NR	rs10732279-?	NR	3E-26	(NPS-PLA2)	0.38	[0.31-0.45] unit increase	Illumina [4020654] (imputed)	N
739	chr1	20306145	20306146	rs11573156	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2G2A	5,367 Icelandic ancestry individuals	NA	1p36.13		rs11573156-C	0.2544	1E-292		0.702533	[0.66-0.74] unit increase	Illumina [7506463] (imputed)	N
739	chr1	20306145	20306146	rs11573156	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G2A	rs11573156-G	0.23	5E-472		2.31	[2.19-2.43] unit increase	Illumina [796141]	N
739	chr1	20306145	20306146	rs11573156	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.13	PLA2G2A	rs11573156-C	0.232	2E-384	(Phospholipase A2, membrane associated, PLA2G2A.2692.74.2)	1.02	[0.98-1.06] unit increase	Affymetrix [10572788] (imputed)	N
739	chr1	20306145	20306146	rs11573156	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.13	NR	rs11573156-?	NR	1E-38	(EA, Phospholipase A2, membrane associated)			Affymetrix [509946]	N
739	chr1	20311675	20311676	rs12568139	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G5, PLA2G2A, PLA2G2E, OTUD3	rs12568139-G	0.07	2E-11		0.72	[0.5-0.94] unit decrease	Illumina [796141]	N
740	chr1	20366329	20366330	rs818678	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G5	rs818678-T	0.39	9E-41		0.65	[0.55-0.75] unit decrease	Illumina [796141]	N
740	chr1	20379574	20379575	rs630041	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p36.13	NR	rs630041-G	0.9261	3E-7		0.0502	[0.031-0.069] unit increase	Illumina [up to 1980188] (imputed)	N
740	chr1	20390321	20390322	rs17354650	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.13	PLA2G5	rs17354650-T	0.2806225	2E-14	(Phospholipase A2, membrane associated)	0.3561	[0.27-0.45] unit increase	Affymetrix [509946]	N
740	chr1	20409539	20409540	rs11573260	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.13	PLA2G5	rs11573260-T	0.01	3E-18		1.8	[1.37-2.23] unit increase	Illumina [796141]	N
740	chr1	20429860	20429861	rs492738	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.12	PLA2G5, PLA2G2C, PLA2G2D, PLA2G2F	rs492738-C	0.38	2E-26		0.47	[0.37-0.57] unit decrease	Illumina [796141]	N
740	chr1	20437633	20437634	rs7515774	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	1p36.12	PLA2G2D	rs7515774-?	NR	1E-6		1.1	[1.06-1.15]	NR [7424691] (imputed)	N
741	chr1	20452019	20452020	rs529143	33126880	Chang X	2020-10-30	Nutr J	Effect of plasma polyunsaturated fatty acid levels on leukocyte telomere lengths in the Singaporean Chinese population.	Telomere length x n-3 polyunsaturated fatty acid level interaction	1,349 Chinese ancestry individuals	NA	1p36.12		rs529143-C	0.131	3E-8		0.075	[0.05-0.1] unit increase	Illumina [NR] (imputed)	N
741	chr1	20455219	20455220	rs12722987	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	1p36.12	PLA2G5, PLA2G2C, PLA2G2D, PLA2G2F, UBXN10	rs12722987-A	0.17	1E-11		0.38	[0.24-0.52] unit decrease	Illumina [796141]	N
741	chr1	20455219	20455220	rs12722987	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	PLA2G2D	rs12722987-A	0.178	7E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
741	chr1	20541369	20541370	rs10799615	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.12		rs10799615-A	0.2525	4E-8		0.0089	[0.0058-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
742	chr1	20625776	20625777	rs12116793	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	1p36.12	VWA5B1	rs12116793-C	0.922303333	6E-6		0.248686	[0.14-0.36] unit decrease	Illumina [6969139] (imputed)	N
742	chr1	20665409	20665410	rs35091490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.12		rs35091490-?	NR	3E-10				NR [~ 8900000] (imputed)	N
742	chr1	20677196	20677197	rs10916772	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale)	4,057 Finnish ancestry individuals	NA	1p36.12	VWA5B1	rs10916772-?		4E-6				Illumina [~ 9600000] (imputed)	N
742	chr1	20688351	20688352	rs60573766	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1p36.12	VWA5B1	rs60573766-C	0.635	4E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
742	chr1	20707152	20707153	rs10916780	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.12	NR	rs10916780-G	0.2476	2E-13		0.0342	[0.025-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
743	chr1	20729450	20729451	rs10916784	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p36.12	NR	rs10916784-G	0.5852	4E-9		0.0272	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
743	chr1	20735100	20735101	rs12743242	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	1p36.12	NR	rs12743242-?		6E-6		1.68	[1.34-2.11]	Illumina [NR]	N
743	chr1	20757819	20757820	rs55761633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.12	LINC01141	rs55761633-C	0.116453	5E-11		0.022573154	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr1	20757819	20757820	rs55761633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.12	LINC01141	rs55761633-C	0.116452	2E-11		0.02296571	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr1	20757924	20757925	rs56383986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs56383986-C	0.111168	1E-13				Affymetrix, Illumina [24653286] (imputed)	N
743	chr1	20757924	20757925	rs56383986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.12	NR	rs56383986-C	0.114396	3E-14		0.021956	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
743	chr1	20757924	20757925	rs56383986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs56383986-C	0.111104	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
743	chr1	20757924	20757925	rs56383986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.12	NR	rs56383986-C	0.114338	4E-14		0.021829	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
743	chr1	20759230	20759231	rs10753502	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.12	VWA5B1, CAMK2N1	rs10753502-?		1E-9				Affymetrix, Illumina [NR] (imputed)	N
743	chr1	20807072	20807073	rs75810319	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p36.12	Intergenic	rs75810319-T	0.1042	3E-10	(MTAG)	0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
743	chr1	20818658	20818659	rs10916805	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.12	CAMK2N1	rs10916805-C	NR	8E-10		6.145	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
743	chr1	20821964	20821965	rs12076947	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p36.12		rs12076947-?	NR	4E-9				NR [7857346] (imputed)	N
743	chr1	20835635	20835636	rs501108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs501108-?	NR	2E-8				NR [~ 8900000] (imputed)	N
744	chr1	20851833	20851834	rs7544348	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs7544348-C	0.169	9E-9	(CYP2D6)	0.04244	NR unit increase	Illumina [1671387] (imputed)	N
744	chr1	20864745	20864746	rs113923880	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	1p36.12		rs113923880-G	NR	8E-6		0.22515	[0.13-0.32] unit decrease	Illumina [NR] (imputed)	N
744	chr1	20871180	20871181	rs12073420	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.12	FAM43B	rs12073420-T	NR	3E-10		6.3	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
744	chr1	20871749	20871750	rs111235962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p36.12		rs111235962-T	0.0962	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
744	chr1	20875181	20875182	rs72649149	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	1p36.12	FAM43B	rs72649149-T	NR	9E-7		0.967	[0.954- 0.980]	Illumina [6740241] (imputed)	N
744	chr1	20875458	20875459	rs4615814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p36.12	Intergenic	rs4615814-T	0.9083	1E-8	(MTAG)	0.0176	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr1	20875458	20875459	rs4615814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p36.12	Intergenic	rs4615814-T	0.9041	2E-10	(MTAG)	0.0142	[0.0099-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr1	20875675	20875676	rs74701752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p36.12	Intergenic	rs74701752-T	0.0928	1E-10	(MTAG)	0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
744	chr1	20877811	20877812	rs12072199	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p36.12	FAM43B	rs12072199-T	NR	2E-10		0.023437403	[0.016-0.031] unit decrease	Affymetrix [NR]	N
744	chr1	20882522	20882523	rs6689263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p36.12	FAM43B	rs6689263-A	NR	3E-10		0.028203934	[0.019-0.037] unit decrease	Affymetrix [NR]	N
744	chr1	20883607	20883608	rs79582714	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.12	FAM43B	rs79582714-T	NR	3E-10		6.32	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
744	chr1	20894441	20894442	rs12137738	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p36.12	FAM43B, CDA	rs12137738-A	0.9	3E-17		8.43	z-score increase	Affymetrix [4311822] (imputed)	N
744	chr1	20907050	20907051	rs640880	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs640880-G	NR	9E-34		0.0474	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
744	chr1	20910769	20910770	rs6704070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.12	CDA	rs6704070-T	0.485507	3E-13		0.016215535	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr1	20915530	20915531	rs602950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.12	CDA	rs602950-G	0.340862	2E-13		0.01703721	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
744	chr1	20915589	20915590	rs3215400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.12		rs3215400-T	NR	1E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
744	chr1	20915589	20915590	rs3215400	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p36.12	CDA	rs3215400-TC	0.47804	9E-15	(2'-O-methylcytidine)	0.175	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
744	chr1	20915700	20915701	rs2072671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.12		rs2072671-C	NR	3E-25		0.0226	[0.018-0.027] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
744	chr1	20915700	20915701	rs2072671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p36.12		rs2072671-C	NR	1E-13		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
744	chr1	20915700	20915701	rs2072671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.12	CDA	rs2072671-C	0.345555	7E-12		0.015991548	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr1	20915700	20915701	rs2072671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.12	CDA	rs2072671-C	0.345539	5E-12		0.015980385	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr1	20915700	20915701	rs2072671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.12	CDA	rs2072671-C	0.345385	7E-46		0.03280196	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
744	chr1	20915700	20915701	rs2072671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.12	CDA	rs2072671-C	0.345531	2E-27		0.0244437	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
744	chr1	20915700	20915701	rs2072671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.12	CDA	rs2072671-C	0.345554	7E-14		0.01729547	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
744	chr1	20915700	20915701	rs2072671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.12		rs2072671-?	NR	2E-11				NR [~ 8900000] (imputed)	N
744	chr1	20915700	20915701	rs2072671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.12		rs2072671-?	NR	2E-17				NR [~ 8900000] (imputed)	N
744	chr1	20916079	20916080	rs589942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p36.12	CDA	rs589942-C	0.661916	3E-19		0.018547	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
744	chr1	20916237	20916238	rs66731853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.12		rs66731853-A	NR	1E-10		0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p36.12	CDA	rs66731853-A	0.325201	2E-9		0.014203574	[0.0096-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.12	CDA	rs66731853-A	0.325293	5E-53		0.03634261	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p36.12	CDA	rs66731853-A	0.325227	3E-9		0.013994854	[0.0094-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs66731853-A	0.296187	1E-34				Affymetrix, Illumina [24246363] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.12	NR	rs66731853-A	0.324678	5E-33		0.023163	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs66731853-A	0.293762	8E-15				Affymetrix, Illumina [20825802] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs66731853-A	0.300771	2E-14				Affymetrix, Illumina [23472807] (imputed)	N
744	chr1	20916237	20916238	rs66731853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.12	NR	rs66731853-A	0.325233	1E-15		0.016166	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
744	chr1	20916237	20916238	rs66731853	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p36.12	CDA	rs66731853-A	0.33	2E-17	(cytidine)	0.296	[0.23-0.36] unit decrease	Illumina [7750367] (imputed)	N
744	chr1	20916237	20916238	rs66731853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.12	CDA	rs66731853-A	0.3251	4E-9		0.0221536	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
744	chr1	20918088	20918089	rs1253920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.12	NR	rs1253920-G	0.620953	4E-11		0.012602	[0.0089-0.0163] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
744	chr1	20918554	20918555	rs139089160	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs139089160-?	NR	2E-22		0.157	[0.13-0.19] unit decrease novel	Illumina [6108953] (imputed)	N
744	chr1	20946755	20946756	rs1614627	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1p36.12	CDA, PINK1	rs1614627-?	NR	6E-7		7.424	unit increase (EA, Dutch cohort)	Illumina [610255]	N
744	chr1	20959745	20959746	rs12037379	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12037379-C	NR	3E-11		0.0343	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
744	chr1	20971041	20971042	rs74315358	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p36.12	PINK1	rs74315358-G	NR	6E-6		0.610031	[0.35-0.87] unit increase	Illumina [13520550] (imputed)	N
745	chr1	20975167	20975168	rs71653623	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p36.12	PINK1, PINK1-AS	rs71653623-T	0.0628	3E-8		0.02425457	[0.016-0.033] unit increase	Affymetrix [up to 18485882] (imputed)	N
745	chr1	20976534	20976535	rs17414302	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p36.12	PINK1, PINK1-AS	rs17414302-A	0.09963	3E-9		0.020799998	[0.014-0.028] unit increase	Affymetrix [up to 18485882] (imputed)	N
745	chr1	20976534	20976535	rs17414302	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p36.12	PINK1-AS	rs17414302-A	NR	7E-10		0.032700583	[0.022-0.043] unit increase	Affymetrix [NR]	N
745	chr1	20997747	20997748	rs12569006	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.12	NR	rs12569006-?	NR	2E-6		4.744	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
745	chr1	21005315	21005316	rs56267558	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	1p36.12	MUL1, CDA, PINK1, PINK1-AS, DDOST, KIF17	rs56267558-T	0.1287	6E-6		0.0431	NR unit increase	NR [NR] (imputed)	N
745	chr1	21011345	21011346	rs12028811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12028811-G	NR	2E-12		0.0279	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr1	21016306	21016307	rs67017818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs67017818-G	NR	1E-11		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr1	21020404	21020405	rs17407280	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	1p36.12	KIF17	rs17407280-C	0.777	7E-6		0.058	[0.033-0.083] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
745	chr1	21031041	21031042	rs2296225	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	1p36.12	NR	rs2296225-?	0.08	1E-7		1.626	[NR]	Illumina [1468075]	N
745	chr1	21034645	21034646	rs61778504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs61778504-T	NR	2E-10		0.0308	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr1	21034645	21034646	rs61778504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs61778504-T	NR	1E-38		0.0603	[0.051-0.069] unit increase	Affymetrix [9000000] (imputed)	N
745	chr1	21037638	21037639	rs12049359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12049359-T	NR	3E-28		0.0583	[0.048-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr1	21037955	21037956	rs114114736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs114114736-T	NR	2E-14		0.0584	[0.044-0.073] unit increase	Affymetrix [9000000] (imputed)	N
745	chr1	21042299	21042300	rs554111	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	1p36.12	NR	rs554111-C	0.3074	7E-7		0.1642	[0.099-0.229] unit decrease	Illumina [10677593] (imputed)	N
745	chr1	21043789	21043790	rs519209	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	1p36.12	KIF17	rs519209-?	NR	2E-7	(conditioned on rs168622)	0.089	[0.056-0.122] unit increase	Affymetrix [9346801] (imputed)	N
745	chr1	21067094	21067095	rs541464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.12		rs541464-?	NR	3E-8				NR [~ 8900000] (imputed)	N
745	chr1	21074726	21074727	rs12404954	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.12	HP1BP3	rs12404954-G	0.3903	1E-17		1.0314595		Affymetrix [11880941] (imputed)	N
745	chr1	21074726	21074727	rs12404954	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p36.12	HP1BP3	rs12404954-A	0.6059	6E-13		0.014318888	[0.01-0.018] unit decrease	Illumina [9339358] (imputed)	N
745	chr1	21084998	21084999	rs2985313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.12		rs2985313-T	NR	1E-25		0.0187	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
745	chr1	21089471	21089472	rs7548269	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (walking duration)	91,105 European ancestry individuals	NA	1p36.12	HP1BP3	rs7548269-T	0.61	2E-8		0.027	[0.017-0.037] SD units decrease	NR [9926106] (imputed)	N
745	chr1	21092708	21092709	rs529876271	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.12	NA	rs529876271-G	0.995902	9E-276		0.0701958	[0.066-0.074] unit increase	Affymetrix [13995440] (imputed)	N
745	chr1	21098815	21098816	rs55961051	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p36.12	HP1BP3	rs55961051-G	0.01	1E-7	(EA)	0.5693	[0.36-0.78] unit increase	Illumina [~ 9000000] (imputed)	N
746	chr1	21137767	21137768	rs10916866	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p36.12		rs10916866-A	0.5887	2E-14		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
746	chr1	21146421	21146422	rs2100382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.12	EIF4G3	rs2100382-A	0.446063	3E-9		0.013148545	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
746	chr1	21146421	21146422	rs2100382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.12		rs2100382-?	NR	2E-7				NR [~ 8900000] (imputed)	N
746	chr1	21152383	21152384	rs4654873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs4654873-?	NR	8E-10				NR [~ 8900000] (imputed)	N
746	chr1	21156666	21156667	rs4654874	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p36.12	NR	rs4654874-G	0.562395592345443	1E-10		0.00595871	[0.0041-0.0078] unit increase	NR [NR]	N
746	chr1	21163920	21163921	rs3767240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p36.12		rs3767240-?	NR	1E-11				NR [~ 8900000] (imputed)	N
746	chr1	21166492	21166493	rs10799667	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p36.12	NR	rs10799667-?	NR	2E-9				Affymetrix [NR]	N
746	chr1	21170810	21170811	rs12042978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.12	NR	rs12042978-C	0.447279	1E-10		0.01283	[0.0089-0.0168] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
746	chr1	21171385	21171386	rs72652923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs72652923-G	NR	6E-46		0.1247	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
746	chr1	21171385	21171386	rs72652923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs72652923-G	NR	6E-54		0.1298	[0.11-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr1	21174428	21174429	rs17449243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p36.12		rs17449243-?	NR	5E-8				NR [~ 8900000] (imputed)	N
746	chr1	21174428	21174429	rs17449243	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p36.12	NR	rs17449243-T	0.8482	6E-6		0.0169	[0.0096-0.0242] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
746	chr1	21191429	21191430	rs3816455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.12	EIF4G3	rs3816455-G	0.448623	2E-10		0.01421524	[0.0098-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
746	chr1	21199763	21199764	rs10737452	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p36.12	NR	rs10737452-T	0.625242547775602	2E-8		0.007646325	[0.005-0.0103] unit increase	NR [NR]	N
746	chr1	21201324	21201325	rs10916892	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.12	EIF4G3	rs10916892-C	0.37970000000000004	5E-19		1.0335917		Affymetrix [11880941] (imputed)	N
746	chr1	21201324	21201325	rs10916892	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.12	EIF4G3	rs10916892-C	0.37970000000000004	5E-19		1.035102		Affymetrix [11880941] (imputed)	N
746	chr1	21214152	21214153	rs540859061	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p36.12	NR	rs540859061-?	NR	1E-6		0.0082092	[0.0049-0.0115] unit increase	Affymetrix [805426] (imputed)	N
746	chr1	21220700	21220701	rs17410008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.12		rs17410008-?	NR	6E-14				NR [~ 8900000] (imputed)	N
746	chr1	21222452	21222452	rs34582942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.12	EIF4G3	rs34582942-TAGG	0.623746	4E-15		0.017794704	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr1	21227005	21227006	rs5772923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.12		rs5772923-T	NR	3E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
746	chr1	21227337	21227338	rs3767247	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p36.12	NR	rs3767247-C	0.374206753204345	2E-9		0.00741063	[0.005-0.0098] unit decrease	NR [NR]	N
746	chr1	21227337	21227338	rs3767247	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p36.12	NR	rs3767247-C	0.374206753204345	3E-10		0.009594261	[0.0066-0.0126] unit decrease	NR [NR]	N
746	chr1	21227337	21227338	rs3767247	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p36.12	NR	rs3767247-C	0.374206753204345	4E-10		0.0061065634	[0.0042-0.008] unit decrease	NR [NR]	N
746	chr1	21229537	21229538	rs57351360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p36.12		rs57351360-?	NR	2E-7				NR [~ 8900000] (imputed)	N
747	chr1	21258203	21258204	rs61781106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.12	NR	rs61781106-A	0.375763	1E-19		0.017307	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
747	chr1	21276853	21276854	rs3767248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs3767248-G	0.385074	5E-18				Affymetrix, Illumina [24332387] (imputed)	N
747	chr1	21302773	21302774	rs6680486	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.12	EIF4G3	rs6680486-C	0.40049999999999997	1E-17		1.0313531		Affymetrix [11880941] (imputed)	N
747	chr1	21314468	21314469	rs115048780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.12		rs115048780-?	NR	2E-9				NR [~ 8900000] (imputed)	N
747	chr1	21324490	21324491	rs2874367	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	1p36.12	EIF4G3	rs2874367-?	NR	1E-8				NR [2100000]	N
747	chr1	21346103	21346104	rs75578006	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p36.12	EIF4G3	rs75578006-G	0.01	7E-8	(EA)	0.5756	[0.37-0.78] unit increase	Illumina [~ 9000000] (imputed)	N
747	chr1	21350564	21350565	rs143370804	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs143370804-?	NR	3E-13	(conditional on round 8)	0.06288284	[0.046-0.08] unit increase novel	Illumina [6108953] (imputed)	N
747	chr1	21354624	21354625	rs72654815	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative acute renal failure after cardiac surgery	52 cases, 1,020 controls	NA	1p36.12	EIF4G3	rs72654815-?	NR	7E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and stroke)	9.090909	[3.7-20]	Illumina [9007469] (imputed)	N
747	chr1	21361175	21361176	rs6426658	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p36.12	EIF4G3	rs6426658-A	0.402	1E-15		0.0097	[0.0073-0.0121] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
748	chr1	21385435	21385436	rs12125335	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p36.12	NR	rs12125335-C	0.147	2E-10		0.010535	[0.0073-0.0138] unit increase	NR [9732723] (imputed)	N
748	chr1	21385435	21385436	rs12125335	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p36.12	NR	rs12125335-T	0.8545	7E-7		0.022959141	[0.014-0.032] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
748	chr1	21392683	21392684	rs113645786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs113645786-T	NR	2E-20		0.0545	[0.043-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr1	21392683	21392684	rs113645786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs113645786-T	NR	1E-9		0.0343	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
748	chr1	21410230	21410231	rs4654899	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	1p36.12	EIF4G3	rs4654899-A	0.33	8E-9	(Right superior frontal gyrus)	969.5	[NR] unit decrease	Affymetrix [517946]	N
748	chr1	21410230	21410231	rs4654899	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	1p36.12	EIF4G3	rs4654899-A	0.33	2E-6	(Left superior frontal gyrus)	787.0	[NR] unit decrease	Affymetrix [517946]	N
748	chr1	21416180	21416181	rs957163	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.12	EIF4G3	rs957163-T	0.3999	9E-18		1.0316		Affymetrix [11880941] (imputed)	N
748	chr1	21420616	21420617	rs11807193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.12	EIF4G3	rs11807193-A	0.390205	2E-14		0.01763877	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr1	21434532	21434533	rs7537072	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.12	NR	rs7537072-T	0.582962	2E-10		0.0126313	[0.0088-0.0165] unit increase	NR [NR]	N
748	chr1	21455558	21455559	rs7556221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.12		rs7556221-?	NR	2E-13				NR [~ 8900000] (imputed)	N
748	chr1	21467870	21467870	rs10627733	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	1p36.12		rs10627733-?	NR	2E-6	(endometrioid)	1.89		Illumina [11595112] (imputed)	N
748	chr1	21477032	21477033	rs78649275	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p36.12	EIF4G3	rs78649275-T	0.01	4E-8	(EA)	0.5951	[0.39-0.8] unit increase	Illumina [~ 9000000] (imputed)	N
749	chr1	21498736	21498737	rs59537090	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.12		rs59537090-T	0.43	2E-15		7.96	z score increase	Affymetrix [9061022] (imputed)	N
749	chr1	21505930	21505931	rs9426736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.12	NR	rs9426736-G	0.462578	4E-16		0.015712	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
749	chr1	21506275	21506276	rs12097415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p36.12	EIF4G3, AL031005.1	rs12097415-A	0.547092	2E-18		0.019598596	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr1	21506275	21506276	rs12097415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1p36.12	EIF4G3, AL031005.1	rs12097415-A	0.54711	7E-20		0.020444423	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr1	21506275	21506276	rs12097415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs12097415-A	0.551406	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
749	chr1	21506929	21506930	rs4060971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs4060971-T	0.551113	9E-21				Affymetrix, Illumina [19905671] (imputed)	N
749	chr1	21506929	21506930	rs4060971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p36.12	NR	rs4060971-T	0.551092	2E-23		0.02066	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
749	chr1	21509641	21509642	rs4654906	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	1p36.12	NR	rs4654906-?		4E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
749	chr1	21513305	21513306	rs61779124	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.12	NR	rs61779124-T	0.4176	3E-14				NR [9056863] (imputed)	N
749	chr1	21518000	21518001	rs752786405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.12		rs752786405-C	0.472977	1E-12		0.0157775	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
749	chr1	21518000	21518001	rs752786405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.12		rs752786405-C	0.47303	5E-12		0.0153928595	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
749	chr1	21520448	21520449	rs9426660	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs9426660-G	0.55101	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
749	chr1	21528834	21528835	rs10916951	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p36.12	NR	rs10916951-T	0.39345231723779	1E-8		0.0069668847	[0.0046-0.0094] unit decrease	NR [NR]	N
749	chr1	21528834	21528835	rs10916951	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p36.12	NR	rs10916951-T	0.39345231723779	3E-8		0.0073942067	[0.0048-0.01] unit decrease	NR [NR]	N
749	chr1	21534236	21534237	rs12131134	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p36.12	NR	rs12131134-T	0.439430231644642	2E-9		0.008958757	[0.0061-0.0119] unit decrease	NR [NR]	N
749	chr1	21534236	21534237	rs12131134	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p36.12	NR	rs12131134-T	0.439430231644642	2E-9		0.0057042115	[0.0038-0.0076] unit decrease	NR [NR]	N
749	chr1	21535329	21535330	rs12752290	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p36.12	NR	rs12752290-C	0.4421	1E-12		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
749	chr1	21535329	21535330	rs12752290	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p36.12	EIF4G3, ECE1	rs12752290-C	0.4444	3E-18		1.0311404		Affymetrix [11880941] (imputed)	N
749	chr1	21564630	21564631	rs141146885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs141146885-T	NR	1E-40		0.2034	[0.17-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr1	21571474	21571475	rs28368004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs28368004-A	NR	1E-17		0.0555	[0.043-0.068] unit increase	Affymetrix [9000000] (imputed)	N
749	chr1	21573721	21573722	rs2229450	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs2229450-?	NR	9E-20		0.05636	[0.044-0.069] unit decrease novel	Illumina [6108953] (imputed)	N
749	chr1	21577158	21577159	rs212517	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p36.12	ECE1	rs212517-T	0.398321	1E-9		0.00875288	[0.0059-0.0116] unit increase	Affymetrix [12370749]	N
749	chr1	21578856	21578857	rs3026888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs3026888-T	NR	9E-18		0.0563	[0.043-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr1	21583310	21583311	rs212524	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p36.12	ECE1	rs212524-T	0.404	5E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
749	chr1	21584940	21584941	rs212526	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.12	ECE1	rs212526-T	0.3993	4E-29		0.0214	[0.018-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
749	chr1	21584940	21584941	rs212526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs212526-?	NR	2E-43				NR [~ 8900000] (imputed)	N
749	chr1	21584940	21584941	rs212526	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.12	NR	rs212526-?	NR	2E-8		0.12659	[0.083-0.171] unit increase	Affymetrix [7794483] (imputed)	N
749	chr1	21588115	21588116	rs2282713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs2282713-A	NR	4E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
749	chr1	21597984	21597985	rs28367958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs28367958-C	NR	4E-12		0.0881	[0.063-0.113] unit increase	Affymetrix [9000000] (imputed)	N
749	chr1	21597984	21597985	rs28367958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs28367958-C	NR	1E-10		0.0779	[0.054-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr1	21630290	21630291	rs12737859	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.12	NR	rs12737859-T	0.106777	1E-8		0.0281518	[0.018-0.038] unit increase	NR [19129689] (imputed)	N
750	chr1	21633210	21633211	rs74698898	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p36.12	ECE1	rs74698898-T	0.9309	1E-6		0.0693	[0.041-0.097] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
750	chr1	21639166	21639167	rs213010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.12		rs213010-?	NR	8E-8				NR [~ 8900000] (imputed)	N
750	chr1	21640386	21640387	rs78787495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs78787495-T	NR	1E-12		0.0292	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr1	21640386	21640387	rs78787495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs78787495-T	NR	6E-16		0.0318	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21643161	21643162	rs72654902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.12	NR	rs72654902-G	0.963279	1E-10		0.033034	[0.023-0.043] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
750	chr1	21645338	21645338	rs201385905	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p36.12	ECE1	rs201385905-CG	0.014	5E-6		0.1563	[0.089-0.223] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
750	chr1	21645338	21645338	rs201385905	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p36.12	ECE1	rs201385905-CG	0.0139	1E-6		0.1663	[0.099-0.233] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
750	chr1	21647222	21647223	rs71636972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs71636972-A	NR	7E-19		0.0343	[0.027-0.042] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21647222	21647223	rs71636972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs71636972-A	NR	6E-36		0.0463	[0.039-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr1	21647222	21647223	rs71636972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p36.12	NR	rs71636972-A	NR	8E-19		0.0342	[0.027-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr1	21650663	21650664	rs213024	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p36.12	Intergenic	rs213024-T	0.591	1E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
750	chr1	21654734	21654735	rs213032	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	ECE1	rs213032-G	0.281	6E-6	(Sleep duration )	0.03	[NR] min/d increase	Illumina [899892]	N
750	chr1	21657506	21657507	rs7543687	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1p36.12	ECE1	rs7543687-T	0.201925	3E-8		5.556	unit decrease	NR [10847151] (imputed)	N
750	chr1	21679268	21679269	rs6695985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs6695985-G	NR	5E-15		0.0387	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr1	21679268	21679269	rs6695985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs6695985-G	NR	1E-45		0.0669	[0.058-0.076] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21684386	21684387	rs115379227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs115379227-A	NR	5E-10		0.0417	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21705435	21705436	rs12143832	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	1p36.12	ECE1	rs12143832-T	0.54	2E-7		1.1111112	[1.06-1.15]	Affymetrix, Illumina [up to 10786384] (imputed)	N
750	chr1	21705724	21705725	rs72657141	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs72657141-C	NR	4E-35		0.1222	[0.1-0.14] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21708195	21708196	rs79183860	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs79183860-A	NR	7E-24		0.0978	[0.079-0.117] unit increase	Affymetrix [9000000] (imputed)	N
750	chr1	21742765	21742766	rs115620170	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p36.12	NBPF3	rs115620170-T	NR	4E-6	(G_Faecalitalea_HB)	0.776048	[0.45-1.1] unit increase	Illumina [7711310] (imputed)	N
750	chr1	21744664	21744665	rs12240141	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.12	ALPL	rs12240141-?	NR	4E-6	(taurine)	0.22551793	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
750	chr1	21751552	21751553	rs4654932	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Vitamin levels	up to 1,200 European ancestry individuals	NA	1p36.12	NBPF3	rs4654932-?	NR	7E-9	(Vitamin B6)			Illumina [up to 10879115] (imputed)	N
750	chr1	21755746	21755747	rs41310412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs41310412-G	NR	1E-119		0.1051	[0.096-0.114] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21765210	21765211	rs6680628	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.12	NBPF3	rs6680628-A	0.230749	1E-300		0.0144254	[0.014-0.015] unit increase	Affymetrix [13995440] (imputed)	N
751	chr1	21766452	21766453	rs1976403	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	1p36.12	ALPL, NBPF3	rs1976403-C	0.40	2E-50		3.6	[3.0-4.2] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
751	chr1	21771996	21771997	rs12118362	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	1p36.12	NBPF3	rs12118362-A	0.213	2E-7	(Vitamin B6)	0.172	[NR] unit increase	Illumina [737081]	N
751	chr1	21775583	21775584	rs12033776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12033776-T	NR	3E-10		0.049	[0.034-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21786067	21786068	rs4654748	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	NBPF3	rs4654748-T	0.434	2E-118		0.1	[0.10-0.09] unit decrease	Illumina [NR] (imputed)	N
751	chr1	21786067	21786068	rs4654748	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	Plasma pyridoxal phosphate to pyridoxal ratio	493 Dutch ancestry individuals	NA	1p36.12	NBPF3	rs4654748-?		4E-9		0.368	[NR] unit increase	Illumina [6260487] (imputed)	N
751	chr1	21786067	21786068	rs4654748	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	Plasma pyridoxal phosphate levels	493 Dutch ancestry individuals	NA	1p36.12	NBPF3	rs4654748-?		6E-6		0.28	[NR] nmol/L increase	Illumina [6260487] (imputed)	N
751	chr1	21786067	21786068	rs4654748	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.12	NBPF3	rs4654748-?	0.48	4E-11	(Plasma PLP)	0.1	[0.080-0.120] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
751	chr1	21786067	21786068	rs4654748	19303062	Tanaka T	2009-03-18	Am J Hum Genet	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	1p36.12	ALPL	rs4654748-C	0.50	8E-18	(vitamin B6)	1.45	[0.90-2.00] ng/ml decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
751	chr1	21793377	21793378	rs60515836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs60515836-C	NR	3E-77		0.0645	[0.058-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21793377	21793378	rs60515836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs60515836-C	NR	3E-113		0.0749	[0.068-0.081] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21795387	21795388	rs1827293	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs1827293-?	NR	2E-106		0.0953	[0.087-0.104] unit increase novel	Illumina [6108953] (imputed)	N
751	chr1	21796503	21796504	rs72872288	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs72872288-C	0.0122	3E-8	(MGMT)	0.008104	NR unit increase	Illumina [1671387] (imputed)	N
751	chr1	21797203	21797204	rs72872292	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs72872292-C	NR	3E-117		0.1244	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21801392	21801393	rs149262245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs149262245-G	NR	2E-54		0.2809	[0.25-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21817084	21817085	rs1106357	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	Plasma pyridoxic acid to pyridoxal phosphate ratio	493 Dutch ancestry individuals	NA	1p36.12	NBPF3	rs1106357-?		3E-6		0.288	[NR] unit decrease	Illumina [6260487] (imputed)	N
751	chr1	21817084	21817085	rs1106357	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	B6 vitamer levels (multivariate analysis)	493 European ancestry individuals	NA	1p36.12	NBPF3, ALPL	rs1106357-?		8E-10				Illumina [6260487] (imputed)	N
751	chr1	21817084	21817085	rs1106357	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	1p36.12	NBPF3, ALPL	rs1106357-?	NR	7E-18		0.06334	[0.049-0.078] unit increase novel	Illumina [6108953] (imputed)	N
751	chr1	21817252	21817253	rs10733029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs10733029-G	NR	7E-12		0.0538	[0.039-0.069] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21817252	21817253	rs10733029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs10733029-G	NR	4E-22		0.0725	[0.058-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21820041	21820042	rs12132412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STIM1	5,361 Icelandic ancestry individuals	NA	1p36.12		rs12132412-G	0.3581	4E-20		0.173305	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
751	chr1	21820041	21820042	rs12132412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMR3A	5,361 Icelandic ancestry individuals	NA	1p36.12		rs12132412-G	0.3581	2E-12		0.133627	[0.097-0.171] unit decrease	Illumina [7506463] (imputed)	N
751	chr1	21820041	21820042	rs12132412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p36.12		rs12132412-G	NR	8E-31		0.0276	[0.023-0.032] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
751	chr1	21820041	21820042	rs12132412	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p36.12	NR	rs12132412-G	0.3906	2E-20		0.002386	[0.0019-0.0028] unit increase	Affymetrix [NR] (imputed)	N
751	chr1	21820041	21820042	rs12132412	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p36.12	NBPF3, ALPL	rs12132412-A	0.63296	3E-13	(ADpSGEGDFXAEGGGVR*)	0.167	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
751	chr1	21820041	21820042	rs12132412	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.12	NR	rs12132412-A	0.61122	2E-12		0.0166046	[0.012-0.021] unit decrease	NR [NR]	N
751	chr1	21820041	21820042	rs12132412	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	Cerebrospinal fluid pyridoxal phosphate to pyridoxal ratio	493 Dutch ancestry individuals	NA	1p36.12	NBPF3	rs12132412-?		4E-9		0.396	[NR] unit increase	Illumina [6260487] (imputed)	N
751	chr1	21820041	21820042	rs12132412	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	Cerebrospinal fluid pyridoxal phosphate levels	493 Dutch ancestry individuals	NA	1p36.12	NBPF3	rs12132412-?		2E-7		0.366	[NR] nmol/L increase	Illumina [6260487] (imputed)	N
751	chr1	21820857	21820858	rs16825415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs16825415-A	NR	2E-21		0.0942	[0.075-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21820857	21820858	rs16825415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs16825415-A	NR	5E-43		0.1297	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21820989	21820990	rs10799701	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p36.12	ALPL	rs10799701-A	0.435	3E-20	(SM-14 + 6 other traits)	0.131	[NR] unit decrease	Affymetrix, Illumina [534665]	N
751	chr1	21821756	21821757	rs1780324	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	1p36.12	ALPL, RAP1GAP, NBPF3	rs1780324-T	0.43	7E-15	(ALP)	0.03	[0.023-0.039] U/L increase	Affymetrix, Illumina [up to 496032]	N
751	chr1	21823291	21823292	rs1697421	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	1p36.12	ALPL	rs1697421-T	0.471	7E-10	(Vitamin B6)	0.173	[NR] unit increase	Illumina [737081]	N
751	chr1	21823291	21823292	rs1697421	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	1p36.12	ALPL	rs1697421-T	0.52	3E-14	(ADSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
751	chr1	21823291	21823292	rs1697421	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	1p36.12	ALPL	rs1697421-T	0.52	2E-20	(DSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.056	[0.044-0.068] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
751	chr1	21823291	21823292	rs1697421	20558539	Kestenbaum B	2010-06-17	J Am Soc Nephrol	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	1p36.12	ALPL, NBPF3	rs1697421-A	0.49	1E-27		0.05	[NR] mg/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
751	chr1	21826529	21826530	rs115239632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs115239632-T	NR	3E-187		0.1856	[0.17-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21826565	21826566	rs6667242	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	1p36.12	ALPL	rs6667242-G	0.387	3E-10		1.0869565	[NR]	Illumina [6603247] (imputed)	N
751	chr1	21830658	21830659	rs13353032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	1p36.12		rs13353032-G	NR	6E-20		0.1199	[0.094-0.146] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
751	chr1	21836339	21836340	rs10917002	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	1p36.12	ALPL	rs10917002-T	0.11	3E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 5000000] (imputed)	N
751	chr1	21836933	21836934	rs6703976	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	1p36.12	ALPL	rs6703976-T	0.11	4E-9		1.18	[1.12-1.25]	Affymetrix [~ 8400000] (imputed)	N
751	chr1	21837754	21837755	rs16825455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	1p36.12		rs16825455-G	0.381208803	1E-11		0.09984599	[0.071-0.129] unit increase	Illumina [13429980] (imputed)	N
751	chr1	21837754	21837755	rs16825455	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	1p36.12	ALPL	rs16825455-T	0.605	9E-6	(Dominant model)	1.425	[1.193-1.702]	Illumina [733202]	N
751	chr1	21839689	21839690	rs975000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs975000-C	NR	1E-93		0.0556	[0.05-0.061] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21839689	21839690	rs975000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs975000-C	NR	4E-85		0.0506	[0.046-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21840047	21840048	rs61778369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs61778369-A	NR	2E-54		0.0746	[0.065-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21840047	21840048	rs61778369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs61778369-A	NR	1E-100		0.0977	[0.089-0.107] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21844495	21844496	rs80320018	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs80320018-G	NR	2E-45		0.0497	[0.043-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21844495	21844496	rs80320018	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs80320018-G	NR	4E-263		0.116	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21844523	21844524	rs74614333	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs74614333-?	NR	2E-13		0.04342	[0.032-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
751	chr1	21845401	21845402	rs75394487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs75394487-A	NR	2E-50		0.1204	[0.1-0.14] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21846433	21846434	rs75059470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs75059470-T	NR	2E-41		0.1118	[0.096-0.128] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21856118	21856119	rs1697407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs1697407-C	NR	4E-68		0.1092	[0.097-0.122] unit increase	Affymetrix [9000000] (imputed)	N
751	chr1	21856615	21856616	rs1256349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs1256349-T	NR	5E-69		0.0576	[0.051-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21856632	21856633	rs76420240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs76420240-A	NR	1E-16		0.0589	[0.045-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21856632	21856633	rs76420240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs76420240-A	NR	3E-67		0.1175	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21866815	21866815	rs11463187	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs11463187-TG	0.212	1E-35		0.07	[0.08-0.05] unit decrease	Illumina [NR] (imputed)	N
751	chr1	21870212	21870213	rs12567402	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	1p36.12	NR	rs12567402-T	0.3278	4E-9		5.876	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
751	chr1	21873001	21873002	rs12141569	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	1p36.12	ALPL	rs12141569-C	0.47	4E-8		1.15	[1.1-1.2]	Affymetrix, Illumina [8000000] (imputed)	N
751	chr1	21875735	21875736	rs55708111	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs55708111-?	NR	2E-6		0.05466	[0.032-0.077] unit increase novel	Illumina [6108953] (imputed)	N
751	chr1	21875915	21875916	rs885814	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	1p36.12	ALPL	rs885814-?	NR	6E-6	(Change in DAS28)			Illumina [486450]	N
751	chr1	21883741	21883742	rs17421553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs17421553-A	NR	2E-114		0.1234	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
751	chr1	21887619	21887620	rs121918003	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918003-?	NR	6E-52		2.34962	[2.03-2.67] unit decrease	NR [9800000] (imputed)	N
751	chr1	21887634	21887635	rs1057521085	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs1057521085-?	NR	2E-22		1.63503	[1.3-1.97] unit increase	NR [9800000] (imputed)	N
751	chr1	21887634	21887635	rs1057521085	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs1057521085-?	NR	6E-71		2.63963	[2.35-2.93] unit decrease	NR [9800000] (imputed)	N
751	chr1	21887690	21887691	rs139811782	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs139811782-?	NR	6E-11		1.58707	[1.09-2.09] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889607	21889608	rs746273959	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs746273959-?	NR	1E-28		2.08093	[1.7-2.46] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889634	21889635	rs1780316	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.12	RAP1GAP	rs1780316-?	NR	9E-7	(phosphocreatine)	0.45708147	[0.27-0.64] unit decrease	Affymetrix [at least 2500000] (imputed)	N
752	chr1	21889635	21889636	rs773257111	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs773257111-A	1.0E-4	7E-27		2.05	[2.42-1.67] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21889650	21889651	rs121918013	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918013-?	NR	6E-40		2.63461	[2.24-3.03] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889654	21889655	rs1374504617	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs1374504617-?	NR	5E-15		1.39828	[1.04-1.76] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889704	21889705	rs758734017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs758734017-?	NR	3E-37		0.675591	[0.57-0.78] unit increase	NR [9800000] (imputed)	N
752	chr1	21889704	21889705	rs758734017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs758734017-?	NR	1E-480		2.1021	[2.01-2.19] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889711	21889712	rs121918011	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918011-?	NR	2E-77		1.85552	[1.65-2.06] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889740	21889741	rs138587317	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs138587317-?	NR	6E-174		1.51232	[1.4-1.62] unit decrease	NR [9800000] (imputed)	N
752	chr1	21889740	21889741	rs138587317	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.12	ALPL	rs138587317-?		4E-157		1.7134	[1.59-1.84] unit increase	Illumina [31500000] (imputed)	N
752	chr1	21889740	21889741	rs138587317	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs138587317-A	0.0012	4E-110		1.12	[1.22-1.03] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21889759	21889760	rs149344982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p36.12		rs149344982-A	NR	6E-1229		0.751	[0.73-0.77] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
752	chr1	21889759	21889760	rs149344982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs149344982-A	NR	7E-19		0.0947	[0.074-0.116] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21889759	21889760	rs149344982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs149344982-A	NR	1E-1311		0.7848	[0.77-0.8] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21889759	21889760	rs149344982	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs149344982-A	0.015	1E-157		0.46	[0.49-0.43] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21890385	21890386	rs1256335	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.12	RAP1GAP	rs1256335-?	NR	1E-6	(phosphoenolpyruvic acid)	0.24061082	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
752	chr1	21890385	21890386	rs1256335	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	1p36.12	ALPL	rs1256335-?	0.21	1E-15	(Plasma PLP)	0.14	[0.10-0.18] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
752	chr1	21890586	21890587	rs121918019	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs121918019-?	NR	8E-11		0.404796	[0.29-0.52] unit increase	NR [9800000] (imputed)	N
752	chr1	21890586	21890587	rs121918019	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918019-?	NR	1E-183		1.50228	[1.4-1.61] unit decrease	NR [9800000] (imputed)	N
752	chr1	21890586	21890587	rs121918019	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs121918019-A	NR	2E-13		0.5193	[0.38-0.66] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21890586	21890587	rs121918019	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs121918019-A	NR	2E-171		1.8937	[1.76-2.03] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21890586	21890587	rs121918019	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs121918019-A	9.0E-5	4E-12		1.54	[1.98-1.11] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21890631	21890632	rs121918007	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918007-?	NR	5E-398		1.48914	[1.42-1.56] unit decrease	NR [9800000] (imputed)	N
752	chr1	21890631	21890632	rs121918007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs121918007-A	NR	2E-243		1.5182	[1.43-1.61] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21890631	21890632	rs121918007	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs121918007-A	6.0E-4	3E-51		1.27	[1.43-1.10] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21890635	21890636	rs765011829	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs765011829-?	NR	1E-13		0.492049	[0.36-0.62] unit increase	NR [9800000] (imputed)	N
752	chr1	21890635	21890636	rs765011829	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs765011829-?	NR	6E-236		1.83016	[1.71-1.95] unit decrease	NR [9800000] (imputed)	N
752	chr1	21890709	21890710	rs749544042	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs749544042-?	NR	4E-14		1.67547	[1.21-2.14] unit decrease	NR [9800000] (imputed)	N
752	chr1	21891930	21891931	rs6656120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs6656120-T	NR	2E-264		0.1314	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21892265	21892266	rs114507999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs114507999-A	NR	2E-11		0.0627	[0.044-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21892265	21892266	rs114507999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs114507999-A	NR	4E-80		0.1692	[0.15-0.19] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21893343	21893344	rs1256332	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	1p36.12	ALPL	rs1256332-A	0.16	6E-11		1.17	[1.12-1.23]	Affymetrix [~ 8400000] (imputed)	N
752	chr1	21894597	21894598	rs777699004	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs777699004-?	NR	4E-23		2.14771	[1.71-2.58] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894604	21894605	rs769948289	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs769948289-?	NR	2E-13		2.13883	[1.5-2.77] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894615	21894616	rs199665722	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs199665722-?	NR	3E-22		3.09709	[2.44-3.75] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894620	21894621	rs759125473	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs759125473-?	NR	4E-32		1.37852	[1.15-1.61] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894681	21894682	rs142608957	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs142608957-?	NR	2E-67		1.13552	[1.01-1.26] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894729	21894730	rs765149569	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs765149569-?	NR	6E-17		1.529	[1.15-1.91] unit decrease	NR [9800000] (imputed)	N
752	chr1	21894734	21894735	rs3200254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs3200254-C	NR	2E-17		0.0328	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21894734	21894735	rs3200254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs3200254-C	NR	3E-278		0.1316	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21895060	21895061	rs1256330	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p36.12	ALPL	rs1256330-T	0.31	1E-272		35.3	z-score increase	Affymetrix [4311822] (imputed)	N
752	chr1	21895624	21895625	rs1780318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p36.12		rs1780318-T	NR	3E-10		0.0319	[0.022-0.042] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
752	chr1	21896766	21896767	rs1256328	26272126	Oddsson A	2015-08-14	Nat Commun	Common and rare variants associated with kidney stones and biochemical traits.	Kidney stones	5,149 European ancestry cases, 279,870 European ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	1p36.12	ALPL	rs1256328-T	0.1779	6E-10		1.21	[NR]	Illumina [28300000] (imputed)	N
752	chr1	21896818	21896819	rs121918020	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918020-?	NR	4E-34		1.78388	[1.5-2.07] unit decrease	NR [9800000] (imputed)	N
752	chr1	21896822	21896823	rs148405563	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs148405563-?	NR	5E-81		0.83141	[0.74-0.92] unit decrease	NR [9800000] (imputed)	N
752	chr1	21897426	21897427	rs115257434	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs115257434-A	0.023	2E-20		0.14	[0.16-0.11] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21897902	21897903	rs4654971	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Serum alkaline phosphatase levels	14,126 African ancestry individuals	NA	1p36.12		rs4654971-T	0.997	8E-11		0.514606	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
752	chr1	21900175	21900176	rs121918002	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs121918002-?	NR	5E-38		0.976458	[0.82-1.13] unit increase	NR [9800000] (imputed)	N
752	chr1	21900175	21900176	rs121918002	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918002-?	NR	8E-296		2.40873	[2.28-2.54] unit decrease	NR [9800000] (imputed)	N
752	chr1	21900175	21900176	rs121918002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs121918002-C	NR	3E-23		0.9251	[0.74-1.11] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21900175	21900176	rs121918002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs121918002-C	NR	3E-154		2.3272	[2.15-2.5] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21900178	21900179	rs1220125702	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs1220125702-?	NR	2E-26		2.18394	[1.78-2.59] unit decrease	NR [9800000] (imputed)	N
752	chr1	21900185	21900186	rs755529290	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs755529290-?	NR	3E-15		0.728044	[0.54-0.92] unit increase	NR [9800000] (imputed)	N
752	chr1	21900185	21900186	rs755529290	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs755529290-?	NR	4E-134		1.92859	[1.76-2.09] unit decrease	NR [9800000] (imputed)	N
752	chr1	21900272	21900275	rs753338851	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs753338851-?	NR	4E-39		2.0083	[1.7-2.31] unit decrease	NR [9800000] (imputed)	N
752	chr1	21900273	21900274	rs121918010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	1p36.12		rs121918010-C	0.003283	6E-186		1.04057	[0.97-1.11] unit decrease	Illumina [13474352] (imputed)	N
752	chr1	21900395	21900396	rs2275372	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	1p36.12	NR	rs2275372-?	NR	2E-11		0.04982	[0.035-0.064] unit increase novel	Illumina [6108953] (imputed)	N
752	chr1	21900890	21900891	rs1767447	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	ALPL	rs1767447-G	0.0577573	2E-11		0.026478	[0.019-0.034] unit increase	NR [13737936] (imputed)	N
752	chr1	21902398	21902399	rs371243939	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	1p36.12		rs371243939-?	NR	7E-16		0.832589	[0.63-1.04] unit increase	NR [9800000] (imputed)	N
752	chr1	21902398	21902399	rs371243939	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs371243939-?	NR	3E-108		1.88135	[1.7-2.06] unit decrease	NR [9800000] (imputed)	N
752	chr1	21902949	21902950	rs1780329	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs1780329-A	0.165	6E-52		0.08	[0.09-0.07] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21903074	21903075	rs121918014	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs121918014-?	NR	1E-35		2.61168	[2.19-3.03] unit decrease	NR [9800000] (imputed)	N
752	chr1	21903928	21903929	rs149889416	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs149889416-?	NR	4E-10		0.705352	[0.46-0.95] unit decrease	NR [9800000] (imputed)	N
752	chr1	21903940	21903941	rs1054159992	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	1p36.12		rs1054159992-?	NR	2E-36		2.13085	[1.79-2.47] unit decrease	NR [9800000] (imputed)	N
752	chr1	21904205	21904206	rs1697405	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	ALPL	rs1697405-?	0.405	3E-19		0.042	[0.05-0.03] unit decrease	Illumina [NR] (imputed)	N
752	chr1	21904373	21904374	rs1772719	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p36.12	ALPL	rs1772719-C	0.18	7E-13	(phosphoethanolamine)	0.303	[0.22-0.39] unit decrease	Illumina [7750367] (imputed)	N
752	chr1	21904373	21904374	rs1772719	25972531	Carter TC	2015-05-13	J Nutr	Common Variants at Putative Regulatory Sites of the Tissue Nonspecific Alkaline Phosphatase Gene Influence Circulating Pyridoxal 5'-Phosphate Concentration in Healthy Adults.	Pyridoxal 5'-phosphate levels	2,158 Irish ancestry individuals	NA	1p36.12	ALPL	rs1772719-?	NR	2E-16		0.06	[0.040-0.080] unit decrease	NR [757337]	N
752	chr1	21904528	21904529	rs2242420	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	1p36.12	ALPL	rs2242420-T	0.18	5E-13	(ALP)	0.163	[0.12-0.21] unit increase	Illumina [561583]	N
752	chr1	21905006	21905007	rs1772720	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs1772720-?	NR	8E-15		0.0298316	[0.022-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
752	chr1	21905603	21905604	rs36053309	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	ALPL	rs36053309-?	NR	4E-130		0.127	[0.12-0.14] unit increase novel	Illumina [6108953] (imputed)	N
752	chr1	21912557	21912558	rs72659201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs72659201-A	NR	2E-11		0.0549	[0.039-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21912557	21912558	rs72659201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs72659201-A	NR	1E-10		0.0505	[0.035-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21916836	21916837	rs116410304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs116410304-T	NR	6E-11		0.0389	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21917233	21917234	rs10917021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs10917021-C	NR	2E-152		0.0957	[0.089-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21921386	21921387	rs114426439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs114426439-C	NR	4E-9		0.0365	[0.024-0.049] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21922131	21922132	rs55722102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs55722102-?	NR	8E-9				NR [~ 8900000] (imputed)	N
752	chr1	21924911	21924912	rs61775974	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs61775974-G	NR	2E-96		0.1249	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21937558	21937559	rs72660319	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.12	NR	rs72660319-G	0.932098	4E-10		0.0243735	[0.017-0.032] unit decrease	NR [NR]	N
752	chr1	21938583	21938584	rs142233496	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs142233496-C	NR	2E-20		0.1834	[0.14-0.22] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21942682	21942683	rs829416	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs829416-T	NR	1E-23		0.039	[0.031-0.047] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21942682	21942683	rs829416	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs829416-T	NR	3E-83		0.0718	[0.065-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21943503	21943504	rs829418	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	1p36.12	RAP1GAP	rs829418-A		3E-6		0.159	unit increase	Affymetrix [NR]	N
752	chr1	21943819	21943820	rs2275360	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	1p36.12	NR	rs2275360-?	NR	6E-7		0.03508	[0.021-0.049] unit increase novel	Illumina [6108953] (imputed)	N
752	chr1	21946830	21946831	rs116068751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs116068751-T	NR	3E-40		0.1203	[0.1-0.14] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21952023	21952024	rs1318236	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	1p36.12	RAP1GAP	rs1318236-C	0.439	7E-18		0.037	[0.03-0.05] unit increase	Illumina [NR] (imputed)	N
752	chr1	21952023	21952024	rs1318236	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	RAP1GAP	rs1318236-C	0.503466	1E-22		0.0181436	[0.015-0.022] unit increase	NR [13737936] (imputed)	N
752	chr1	21952023	21952024	rs1318236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs1318236-?	NR	3E-31				NR [~ 8900000] (imputed)	N
752	chr1	21952023	21952024	rs1318236	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs1318236-?	NR	3E-27		0.0218171	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
752	chr1	21952883	21952884	rs1130564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs1130564-A	NR	6E-63		0.0878	[0.078-0.098] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21952883	21952884	rs1130564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs1130564-A	NR	7E-335		0.196	[0.19-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21953025	21953026	rs12039278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs12039278-C	NR	2E-11		0.0267	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21953025	21953026	rs12039278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12039278-C	NR	3E-158		0.1018	[0.094-0.109] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21954964	21954965	rs77972946	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1p36.12	NR	rs77972946-?	NR	2E-17	(conditional on round 5)	0.040110756	[0.031-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
752	chr1	21957665	21957666	rs116503681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs116503681-T	NR	2E-101		0.1367	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21968740	21968741	rs78915636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs78915636-T	NR	6E-44		0.0851	[0.073-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21968740	21968741	rs78915636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs78915636-T	NR	3E-114		0.1329	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21974833	21974834	rs4654975	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	1p36.12	RAP1GAP	rs4654975-C	0.34	3E-8	(EA)	5.55	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
752	chr1	21976288	21976289	rs141127873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs141127873-T	NR	4E-9		0.0696	[0.046-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21979229	21979230	rs2625408	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs2625408-T	NR	2E-18		0.0226	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	21980749	21980750	rs1628418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs1628418-C	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	21991234	21991235	rs829375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.12	RAP1GAP	rs829375-C	0.23158	2E-13		0.019341897	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	21991234	21991235	rs829375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p36.12	RAP1GAP	rs829375-C	0.2331	3E-52		0.06395886	[0.056-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	21991234	21991235	rs829375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p36.12	RAP1GAP	rs829375-C	0.2331	1E-23		0.04242726	[0.034-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	22000128	22000129	rs829402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.12	RAP1GAP	rs829402-C	0.229359	3E-19		0.02557201	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22000128	22000129	rs829402	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p36.12	RAP1GAP	rs829402-C	0.2309	5E-23		0.0422906	[0.034-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	22003792	22003793	rs829396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.12	USP48	rs829396-C	0.229333	5E-43		0.03963967	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22003792	22003793	rs829396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.12	USP48	rs829396-C	0.22938	4E-20		0.026302757	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22005510	22005511	rs78337240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs78337240-C	NR	4E-26		0.1193	[0.097-0.141] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	22012207	22012208	rs76243843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs76243843-T	NR	1E-12		0.0372	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	22014470	22014471	rs17423390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.12	USP48	rs17423390-T	0.453245	5E-22		0.02162334	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22014470	22014471	rs17423390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.12	USP48	rs17423390-T	0.453256	8E-21		0.020979032	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22014470	22014471	rs17423390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.12	USP48	rs17423390-T	0.45327	5E-81		0.046352737	[0.042-0.051] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22014470	22014471	rs17423390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.12	USP48	rs17423390-T	0.453289	6E-40		0.031931024	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22014470	22014471	rs17423390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.12	USP48	rs17423390-T	0.453305	6E-39		0.031465743	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
752	chr1	22014470	22014471	rs17423390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p36.12	USP48	rs17423390-T	0.4534	8E-62		0.05960023	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	22014470	22014471	rs17423390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p36.12	USP48	rs17423390-T	0.4534	2E-28		0.0401836	[0.033-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	22014470	22014471	rs17423390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p36.12	USP48	rs17423390-T	0.4534	7E-28		0.03969738	[0.033-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr1	22014548	22014549	rs67730681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs67730681-T	NR	1E-16		0.0399	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr1	22014548	22014549	rs67730681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs67730681-T	NR	5E-12		0.0319	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
752	chr1	22015359	22015360	rs4654764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p36.12		rs4654764-C	NR	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
753	chr1	22038065	22038066	rs76367513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs76367513-A	NR	1E-13		0.0425	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr1	22038065	22038066	rs76367513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs76367513-A	NR	1E-20		0.0513	[0.041-0.062] unit increase	Affymetrix [9000000] (imputed)	N
753	chr1	22068325	22068326	rs1825307	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	1p36.12	NR	rs1825307-G	0.7545	6E-9		0.0595	[0.04-0.079] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
753	chr1	22068325	22068326	rs1825307	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	1p36.12		rs1825307-G	0.755655613	4E-9		0.9442747	[0.926410162-0.962483721]	Illumina [8919992] (imputed)	N
753	chr1	22068325	22068326	rs1825307	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	1p36.12	USP48	rs1825307-A	0.25	2E-9		1.06	1.04-1.09	Illumina [12557761] (imputed)	N
753	chr1	22071991	22071992	rs12132216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12132216-C	NR	1E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr1	22077514	22077515	rs333193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs333193-G	NR	4E-9		0.0242	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
753	chr1	22080686	22080687	rs72660393	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	1p36.12	NR	rs72660393-G	0.01582	2E-6		0.5739	[0.34-0.81] unit increase	Illumina [10677593] (imputed)	N
753	chr1	22102327	22102328	rs10799713	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p36.12	NR	rs10799713-G	0.21159	9E-16		0.0270994	[0.02-0.034] unit increase	Affymetrix [16580851] (imputed)	N
753	chr1	22108542	22108543	rs79472736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs79472736-A	NR	3E-10		0.0432	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr1	22112173	22112174	rs11802899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p36.12		rs11802899-A	NR	1E-10		0.0497	[0.035-0.065] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
753	chr1	22115290	22115291	rs34759301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p36.12		rs34759301-A	0.661426998	5E-10		0.060740795	[0.042-0.08] unit decrease	Illumina [13429769] (imputed)	N
753	chr1	22124819	22124820	rs6659601	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	1p36.12	NR	rs6659601-G	NR	3E-6	(Hispanic)	1.69	[0.18-3.20] unit increase	Affymetrix [14000000] (imputed)	N
753	chr1	22132517	22132518	rs35465346	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p36.12	LDLRAD2	rs35465346-A	0.1628	9E-6		0.0401	[0.022-0.058] unit decrease	NR [8041861] (imputed)	N
753	chr1	22138466	22138467	rs6656070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs6656070-?	NR	1E-12				NR [~ 8900000] (imputed)	N
753	chr1	22139893	22139894	rs35457662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs35457662-C	NR	3E-35		0.0382	[0.032-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr1	22150119	22150120	rs3736360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs3736360-T	NR	2E-23		0.0306	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
753	chr1	22150129	22150130	rs114015043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs114015043-T	NR	2E-9		0.1092	[0.074-0.145] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22160869	22160870	rs76382135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs76382135-T	NR	3E-9		0.0307	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22169324	22169325	rs41266007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs41266007-T	NR	4E-18		0.0686	[0.053-0.084] unit increase	Affymetrix [9000000] (imputed)	N
754	chr1	22187451	22187452	rs75200282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs75200282-A	NR	2E-49		0.0988	[0.086-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22188288	22188289	rs142433309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs142433309-A	NR	3E-176		0.5072	[0.47-0.54] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22199244	22199245	rs2229482	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.12	HSPG2	rs2229482-T	0.6344	2E-7		0.0369	[0.023-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
754	chr1	22215241	22215242	rs41266013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs41266013-T	NR	2E-14		0.0633	[0.047-0.08] unit increase	Affymetrix [9000000] (imputed)	N
754	chr1	22220637	22220638	rs115351721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p36.12	NR	rs115351721-A	NR	1E-14		0.0854	[0.064-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22220637	22220638	rs115351721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs115351721-A	NR	2E-15		0.0841	[0.064-0.105] unit increase	Affymetrix [9000000] (imputed)	N
754	chr1	22222454	22222455	rs1869780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs1869780-T	NR	3E-44		0.511	[0.44-0.58] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr1	22237721	22237722	rs2445130	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p36.12	Intergenic	rs2445130-A	NR	8E-7	(between families)	4.933	unit increase	Affymetrix [up to 15107142] (imputed)	N
754	chr1	22244591	22244592	rs9426781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.12		rs9426781-?	NR	4E-9				NR [~ 8900000] (imputed)	N
754	chr1	22245755	22245756	rs4233277	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.12		rs4233277-T	0.37	7E-16		8.07	z score increase	Affymetrix [9061022] (imputed)	N
754	chr1	22247497	22247498	rs12131384	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.12	NR	rs12131384-C	0.3816	1E-14				NR [9056863] (imputed)	N
754	chr1	22266329	22266330	rs115979533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.12		rs115979533-?	NR	6E-9				NR [~ 8900000] (imputed)	N
754	chr1	22281392	22281393	rs7533718	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds (lobar)	2,035 European ancestry cases, 27 Chinese ancestry cases, 36 Malay ancestry cases, 81 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	1p36.12	HSPG2	rs7533718-A	0.83	3E-7		0.77	NR	Affymetrix, Illumina [NR] (imputed)	N
755	chr1	22282618	22282619	rs7529220	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p36.12	HSPG2	rs7529220-C	0.84	2E-10		0.58	[0.4-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
755	chr1	22282618	22282619	rs7529220	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p36.12	HSPG2	rs7529220-C	0.847	2E-10		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
755	chr1	22283670	22283671	rs10917075	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.12		rs10917075-C	0.36	2E-17		8.5	z score increase	Affymetrix [9061022] (imputed)	N
755	chr1	22283990	22283991	rs4655001	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p36.12	HSPG2	rs4655001-A	0.882	3E-8		0.5825	[0.38-0.79] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
755	chr1	22288655	22288656	rs75508464	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	NASH resolution in nonalcoholic steatohepatitis	25 European ancestry cases, 116 European ancestry controls	NA	1p36.12	Intergenic	rs75508464-?	NR	6E-7				Illumina [5417859] (imputed)	N
755	chr1	22302426	22302427	rs10917087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p36.12		rs10917087-G	NR	2E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
755	chr1	22315421	22315425	rs71918322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.12	CELA3B	rs71918322-T	0.334933	5E-18		0.020269455	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
755	chr1	22318406	22318407	rs12132088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.12	NR	rs12132088-G	0.330206	2E-15		0.016096	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
755	chr1	22322511	22322512	rs10799728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.12	CELA3B	rs10799728-G	0.343863	1E-12		0.016422769	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
755	chr1	22337270	22337271	rs10917111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs10917111-C	0.305074	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
755	chr1	22340978	22340979	rs61778000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p36.12	RNU6-776P, RN7SL186P, CELA3A	rs61778000-A	0.610781	7E-12		0.015872438	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
755	chr1	22341713	22341714	rs2501309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p36.12		rs2501309-C	NR	6E-14		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
755	chr1	22341713	22341714	rs2501309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.12	RNU6-776P, RN7SL186P, CELA3A	rs2501309-C	0.656458	7E-18		0.020007389	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
755	chr1	22341713	22341714	rs2501309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs2501309-C	0.582509	9E-14				Affymetrix, Illumina [24649327] (imputed)	N
755	chr1	22341713	22341714	rs2501309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.12		rs2501309-?	NR	2E-7				NR [~ 8900000] (imputed)	N
755	chr1	22342836	22342837	rs2501306	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	1p36.12	CELA3A	rs2501306-?	NR	7E-6				Illumina [7401356] (imputed)	N
755	chr1	22347395	22347396	rs12407439	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p36.12	LINC01635	rs12407439-A	0.8302	4E-8		0.0754	[0.048-0.102] unit decrease	NR [9744772] (imputed)	N
755	chr1	22348103	22348104	rs2865198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs2865198-T	NR	2E-20		0.0258	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
755	chr1	22355977	22355978	rs10917123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p36.12	LINC00339	rs10917123-A	NR	4E-8		0.0211302	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
755	chr1	22355977	22355978	rs10917123	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p36.12	LINC00339	rs10917123-?	NR	1E-8		0.017731495	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
755	chr1	22357228	22357229	rs3820687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	LINC00339	rs3820687-T	NR	3E-10		0.0230769	[0.016-0.03] unit increase	Affymetrix [323123] (imputed)	N
755	chr1	22358456	22358457	rs2473290	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	1p36.12		rs2473290-T	NR	3E-7		1.083	[1.05-1.117]	Affymetrix [7846216] (imputed)	N
755	chr1	22358456	22358457	rs2473290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs2473290-?	NR	1E-21				NR [~ 8900000] (imputed)	N
755	chr1	22362043	22362044	rs2501285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs2501285-?	NR	4E-9				NR [~ 8900000] (imputed)	N
755	chr1	22373623	22373624	rs2501276	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	1p36.12	CDC42	rs2501276-A		2E-7	(AA)			Illumina [NR]	N
755	chr1	22384978	22384978	rs5772984	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs5772984-?	NR	2E-22		0.0399068	[0.032-0.048] unit increase	Affymetrix [20259828] (imputed)	N
755	chr1	22390576	22390577	rs2473321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	CDC42, CDC42-IT1	rs2473321-T	NR	2E-11		0.0239052	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
755	chr1	22395250	22395251	rs2473317	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1p36.12	CDC42, CDC42-IT1, LINC00339, WNT4	rs2473317-G	NR	3E-6	(daytime napping)	0.8577	[0.5-1.22] unit decrease	Affymetrix [7141204] (imputed)	N
755	chr1	22403106	22403107	rs16826452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs16826452-C	NR	2E-13		0.0491	[0.036-0.062] unit increase	Affymetrix [9000000] (imputed)	N
756	chr1	22415409	22415410	rs2268177	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.12	WNT4	rs2268177-?	NR	5E-6	(citrate)	0.24208201	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
756	chr1	22422720	22422721	rs10917151	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12		rs10917151-?		3E-7		1.03	(1.02-1.04)	Illumina [7645193] (imputed)	N
756	chr1	22422720	22422721	rs10917151	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12		rs10917151-?		5E-12		1.14	(1.1-1.18)	Illumina [7645193] (imputed)	N
756	chr1	22422720	22422721	rs10917151	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	1p36.12	CDC42, WNT4	rs10917151-A	0.16	2E-24		1.16	[1.13-1.19]	Affymetrix, Illumina [NR] (imputed)	N
756	chr1	22422720	22422721	rs10917151	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	1p36.12	CDC42	rs10917151-A	0.20124	5E-14		1.12	[1.09-1.16]	Affymetrix, Illumina [43421991] (imputed)	N
756	chr1	22425641	22425642	rs10917152	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p36.12	NR	rs10917152-T	NR	2E-9		5.98	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
756	chr1	22428397	22428398	rs541507329	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p36.12	ENSG00000271840	rs541507329-A	NR	5E-8		5.452	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
756	chr1	22428815	22428816	rs182746053	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.12	CDC42	rs182746053-A	0.997127	2E-132		0.0527016	[0.048-0.057] unit increase	Affymetrix [13995440] (imputed)	N
756	chr1	22430068	22430069	rs2143103	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p36.12	NR	rs2143103-G	0.151093	1E-8		0.049978416	[0.033-0.067] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
756	chr1	22430068	22430069	rs2143103	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p36.12	ENSG00000271840	rs2143103-?	NR	3E-9		0.016323835	[0.011-0.022] unit increase	NR [7306098]	N
756	chr1	22430068	22430069	rs2143103	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p36.12	Intergenic	rs2143103-A	0.1366	1E-8		0.0238	[0.016-0.032] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
756	chr1	22436445	22436446	rs7412010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	1p36.12		rs7412010-C	0.578484766	2E-9		0.21006677	[0.14-0.28] unit increase	Illumina [13403071] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	1p36.12	WNT4, CDC42	rs7412010-C	0.15	2E-29		1.13	[1.11-1.16]	Affymetrix, Illumina [8662096] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	WNT4, CDC42	rs7412010-?		5E-8		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	CDC42, WNT4	rs7412010-?		1E-12		1.15	[1.10-1.19]	Illumina [7645193] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	WNT4, CDC42	rs7412010-?		7E-11	(uterine fibroid)			Illumina [7645193] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	WNT4, CDC42	rs7412010-?		5E-11		1.12	[1.08-1.15]	Illumina [7645193] (imputed)	N
756	chr1	22436445	22436446	rs7412010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	WNT4, CDC42	rs7412010-?		4E-10				Illumina [7645193] (imputed)	N
756	chr1	22439519	22439520	rs4654783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p36.12		rs4654783-C	0.298322	4E-9		0.0128221	[0.0085-0.0171] unit decrease	Illumina [13479295] (imputed)	N
756	chr1	22444974	22444975	rs10737462	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	1p36.12	NR	rs10737462-T	0.2267	2E-9		0.0925	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
756	chr1	22446108	22446108	rs3835220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs3835220-C	NR	4E-9		0.0180702	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
756	chr1	22447147	22447148	rs12756110	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	WNT4	rs12756110-G	0.07885	2E-15		0.0275037	[0.021-0.034] unit increase	NR [13737936] (imputed)	N
756	chr1	22447315	22447316	rs3765350	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	WNT4	rs3765350-G	0.23	6E-9				Illumina [2276811] (imputed)	N
756	chr1	22447315	22447316	rs3765350	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	WNT4	rs3765350-G	0.23	1E-8		0.0939	[NR] unit decrease	Illumina [2276811] (imputed)	N
756	chr1	22447315	22447316	rs3765350	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3765350-A	NR	4E-9	(EA)	0.1159	[0.077-0.155] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22447315	22447316	rs3765350	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3765350-A	0.78	7E-10		0.107	[0.074-0.140] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22447315	22447316	rs3765350	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3765350-A	NR	6E-8	(EA)	0.1071	[0.068-0.146] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22447315	22447316	rs3765350	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3765350-A	0.78	3E-8		0.097	[0.062-0.132] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22450486	22450487	rs2235529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	1p36.12		rs2235529-T	NR	2E-9		0.1351	[0.091-0.179] unit increase	Affymetrix, Illumina [25734875] (imputed)	N
756	chr1	22450486	22450487	rs2235529	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p36.12	NR	rs2235529-C	0.84	2E-17		0.021	[0.016-0.026] unit increase	Affymetrix [2446094] (imputed)	N
756	chr1	22450486	22450487	rs2235529	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p36.12	NR	rs2235529-C	0.84	5E-8				Affymetrix [2446094] (imputed)	N
756	chr1	22450486	22450487	rs2235529	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs2235529-C	NR	3E-7	(EA)	0.1173	[0.072-0.162] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22450486	22450487	rs2235529	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs2235529-C	0.85	1E-8		0.117	[0.076-0.158] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22450486	22450487	rs2235529	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	1p36.12	LOC100289113, ZBTB40, WNT4	rs2235529-A	0.153	3E-9		1.3	[1.19-1.41]	Illumina [580699]	N
756	chr1	22451844	22451845	rs7526484	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	1p36.12	CDC42, WNT4	rs7526484-T	0.257	5E-8		5.46	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
756	chr1	22458793	22458794	rs12404660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.12		rs12404660-?	NR	2E-13				NR [~ 8900000] (imputed)	N
756	chr1	22459753	22459754	rs4655025	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.12		rs4655025-A	0.43	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
756	chr1	22459753	22459754	rs4655025	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.12	NR	rs4655025-A	0.4325	5E-13				NR [9056863] (imputed)	N
756	chr1	22462110	22462111	rs12037376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs12037376-A	NR	2E-9		0.0256419	[0.017-0.034] unit decrease	Affymetrix [323858] (imputed)	N
756	chr1	22462110	22462111	rs12037376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p36.12	WNT4	rs12037376-A	NR	5E-9		0.0250805	[0.017-0.033] unit decrease	Affymetrix [127266] (imputed)	N
756	chr1	22462110	22462111	rs12037376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p36.12	WNT4	rs12037376-A	NR	5E-10		0.0273921	[0.019-0.036] unit increase	Affymetrix [323858] (imputed)	N
756	chr1	22462110	22462111	rs12037376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs12037376-A	NR	2E-14		0.0321716	[0.024-0.04] unit increase	Affymetrix [323123] (imputed)	N
756	chr1	22462110	22462111	rs12037376	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	NR	rs12037376-?		1E-6		1.31	(1.17-1.46)	Illumina [7645193] (imputed)	N
756	chr1	22462110	22462111	rs12037376	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	1p36.12	WNT4	rs12037376-A	NR	4E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [43421991] (imputed)	N
756	chr1	22462110	22462111	rs12037376	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	1p36.12	WNT4	rs12037376-A	0.58	2E-6	(Japanese)	1.28	1.16-1.42	Affymetrix, Illumina [up to 6979035] (imputed)	N
756	chr1	22462110	22462111	rs12037376	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	1p36.12	WNT4	rs12037376-A	0.17	9E-17		1.16	1.12-1.19	Affymetrix, Illumina [up to 6979035] (imputed)	N
756	chr1	22462110	22462111	rs12037376	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	1p36.12	WNT4	rs12037376-A	0.17	1E-12	(EA)	1.14	1.10-1.19	Affymetrix, Illumina [up to 6979035] (imputed)	N
756	chr1	22462130	22462131	rs10799737	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p36.12	Intergenic	rs10799737-?		1E-6		1.3157895	[1.18-1.47]	Illumina [7645193] (imputed)	N
756	chr1	22463456	22463457	rs11805891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs11805891-G	NR	8E-13		0.0501	[0.036-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
756	chr1	22468214	22468215	rs3820282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	1p36.12		rs3820282-T	NR	4E-19		0.1783	[0.14-0.22] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
756	chr1	22468214	22468215	rs3820282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	1p36.12		rs3820282-T	NR	4E-52		0.1542	[0.13-0.17] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
756	chr1	22468214	22468215	rs3820282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	1p36.12		rs3820282-T	0.544511621	9E-35		0.17080532	[0.14-0.2] unit increase	Illumina [13401454] (imputed)	N
756	chr1	22468214	22468215	rs3820282	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Uterine fibroids	5,954 Japanese ancestry cases, 95,010 Japanese ancestry controls	NA	1p36.12		rs3820282-T	0.546288213	2E-15		1.1827276	[1.134949999-1.232516418]	Illumina [8919992] (imputed)	N
756	chr1	22468214	22468215	rs3820282	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	1p36.12	WNT4	rs3820282-C	0.8283	3E-21		1.1764705	[1.14-1.22]	Affymetrix, Illumina [37144863] (imputed)	N
756	chr1	22468214	22468215	rs3820282	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	1p36.12	WNT4	rs3820282-?	NR	8E-8	(Serous)	1.12	[1.07-1.17]	Illumina [up to 10962898] (imputed)	N
756	chr1	22468214	22468215	rs3820282	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	1p36.12	WNT4	rs3820282-?	NR	2E-8		1.11	[1.06-1.15]	Illumina [up to 10962898] (imputed)	N
756	chr1	22469071	22469072	rs183472573	29058377	Sanchez-Roige S	2017-10-23	Addict Biol	Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.	Alcohol consumption over the past year	20,328 European ancestry individuals	NA	1p36.12	NR	rs183472573-C	0.976	1E-6		0.052	[0.074-0.031] unit decrease	Illumina [13280794] (imputed)	N
756	chr1	22470406	22470407	rs56318008	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p36.12	NR	rs56318008-T	0.1603	2E-25		0.0838	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
756	chr1	22470406	22470407	rs56318008	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	1p36.12	WNT4, CDC42, CELA3A	rs56318008-T	0.139	3E-14		1.05	[NR] unit increase	Illumina [15635593] (imputed)	N
756	chr1	22470450	22470451	rs55938609	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	1p36.12	WNT4	rs55938609-?	NR	6E-7		1.24	[1.15-1.35]	Illumina [NR] (imputed)	N
756	chr1	22472450	22472451	rs7543136	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.12	WNT4	rs7543136-T	0.7209	1E-23		0.021	[0.017-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
756	chr1	22472505	22472506	rs7519889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs7519889-A	NR	6E-12		0.0260899	[0.019-0.034] unit increase	Affymetrix [323123] (imputed)	N
756	chr1	22472505	22472506	rs7519889	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs7519889-?	NR	1E-56		0.0391361	[0.034-0.044] unit increase	Affymetrix [20259828] (imputed)	N
756	chr1	22472505	22472506	rs7519889	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	WNT4	rs7519889-G	0.795991	1E-15	(women)	0.0421762	[0.031-0.053] unit increase	NR [17166351] (imputed)	N
756	chr1	22472505	22472506	rs7519889	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	WNT4	rs7519889-G	0.795157	9E-33		0.0470323	[0.039-0.055] unit increase	NR [17166351] (imputed)	N
756	chr1	22472505	22472506	rs7519889	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	WNT4	rs7519889-G	0.794202	2E-16	(men)	0.0498186	[0.037-0.062] unit increase	NR [17166351] (imputed)	N
756	chr1	22473409	22473410	rs7515106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p36.12	WNT4	rs7515106-C	NR	3E-8		0.0216231	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
756	chr1	22477492	22477493	rs7542242	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.12	WNT4	rs7542242-T	0.3273	2E-6		0.034	[0.02-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
756	chr1	22483649	22483649	rs11385342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	WNT4	rs11385342-TGGGGGG	NR	1E-8		0.0184282	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
756	chr1	22483649	22483649	rs11385342	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs11385342-?	NR	8E-82		0.043874	[0.039-0.049] unit increase	Affymetrix [20259828] (imputed)	N
756	chr1	22484574	22484575	rs3971300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs3971300-C	NR	3E-8		0.0191361	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
756	chr1	22484574	22484575	rs3971300	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	WNT4	rs3971300-T	0.735224	7E-23		0.022724	[0.018-0.027] unit increase	NR [13737936] (imputed)	N
756	chr1	22484574	22484575	rs3971300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs3971300-?	NR	7E-90				NR [~ 8900000] (imputed)	N
756	chr1	22484574	22484575	rs3971300	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p36.12	NR	rs3971300-T	0.7092	7E-23	(European)	0.0693	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
756	chr1	22485803	22485804	rs75730128	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs75730128-G	0.01045	2E-8	(PCCB)	0.3911	NR unit increase	Illumina [1671387] (imputed)	N
756	chr1	22485870	22485871	rs16826658	20601957	Uno S	2010-07-04	Nat Genet	A genome-wide association study identifies genetic variants in the CDKN2BAS locus associated with endometriosis in Japanese.	Endometriosis	1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	484 Japanese ancestry cases, 3,974 Japanese ancestry controls		WNT4	rs16826658-G	0.523	2E-6		1.2	[1.11-1.29]	Illumina [460945]	N
756	chr1	22486012	22486013	rs12094994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p36.12	WNT4	rs12094994-T	NR	5E-11		0.0247043	[0.017-0.032] unit increase	Affymetrix [323123] (imputed)	N
756	chr1	22486579	22486580	rs72865212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs72865212-?	NR	7E-36				NR [~ 8900000] (imputed)	N
756	chr1	22490723	22490724	rs7521902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.12	WNT4	rs7521902-A	0.2247	3E-8	(EA)	0.0242	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
756	chr1	22490723	22490724	rs7521902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p36.12	WNT4	rs7521902-A	0.2247	3E-6	(EA,men)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
756	chr1	22490723	22490724	rs7521902	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	1p36.12	WNT4	rs7521902-A	0.238	3E-11		1.19	[1.13-1.25]	Illumina [407632]	N
756	chr1	22490723	22490724	rs7521902	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.12	WNT4	rs7521902-A	0.31	1E-10		0.05	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
756	chr1	22490723	22490724	rs7521902	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	1p36.12	NR	rs7521902-?	NR	5E-6		1.12	[1.07-1.18]	Illumina [2056878] (imputed)	N
756	chr1	22492886	22492887	rs3920498	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	1p36.12	WNT4	rs3920498-?	NR	6E-7		1.3	[1.18-1.43]	Illumina [NR] (imputed)	N
756	chr1	22492886	22492887	rs3920498	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3920498-G	NR	1E-10	(EA)	0.139	[0.097-0.181] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22492886	22492887	rs3920498	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	1p36.12	WNT4	rs3920498-G	0.8	2E-12		0.134	[0.097-0.171] unit increase	Illumina [~ 2500000] (imputed)	N
756	chr1	22493089	22493090	rs60999980	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs60999980-?	NR	1E-14		0.0293901	[0.022-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
756	chr1	22499529	22499530	rs17360053	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.12	WNT4	rs17360053-G	0.19	9E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
756	chr1	22501627	22501628	rs10917165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.12		rs10917165-?	NR	2E-10				NR [~ 8900000] (imputed)	N
756	chr1	22505108	22505108	rs144928556	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs144928556-?	NR	1E-10		0.0148768	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
756	chr1	22513010	22513011	rs12743883	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p36.12	WNT4, MIR4418	rs12743883-G	0.592310834714131	1E-10		0.0311	[0.022-0.04] SD increase	Illumina [22400000] (imputed)	N
756	chr1	22513889	22513890	rs10917168	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	1p36.12	WNT4	rs10917168-T	0.284	6E-24		0.074	[0.059-0.088] unit increase	Illumina [33400000] (imputed)	N
756	chr1	22515031	22515032	rs4654786	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p36.12	CDC42	rs4654786-?	NR	4E-6	(quinolinic acid)	0.18923521	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
756	chr1	22515496	22515497	rs72647433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs72647433-A	NR	2E-16		0.0769	[0.059-0.095] unit increase	Affymetrix [9000000] (imputed)	N
756	chr1	22528107	22528108	rs142072330	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	WNT4	rs142072330-C	0.921677	3E-12		0.0238119	[0.017-0.031] unit decrease	NR [13737936] (imputed)	N
756	chr1	22531541	22531542	rs79364962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	WNT4	rs79364962-A	NR	2E-8		0.0303963	[0.02-0.041] unit increase	Affymetrix [321016] (imputed)	N
756	chr1	22531541	22531542	rs79364962	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	MIR4418	rs79364962-G	0.929558	3E-22		0.0377243	[0.03-0.045] unit increase	NR [13737936] (imputed)	N
756	chr1	22531541	22531542	rs79364962	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs79364962-?	NR	4E-74		0.0716648	[0.064-0.08] unit increase	Affymetrix [20259828] (imputed)	N
756	chr1	22533563	22533564	rs56365040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs56365040-A	NR	6E-11		0.0419	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
756	chr1	22534550	22534551	rs3765342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.12		rs3765342-?	NR	1E-10				NR [~ 8900000] (imputed)	N
756	chr1	22536642	22536643	rs2473248	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	1p36.12	WNT4, ZBTB40	rs2473248-C	0.87	1E-9		0.0331	[0.023-0.044] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
756	chr1	22538786	22538787	rs2473253	31089239	Choe EK	2019-05-14	Sci Rep	Genome-wide association study of right-sided colonic diverticulosis in a Korean population.	Right-sided colonic diverticulosis	893 Korean ancestry cases, 1,075 Korean ancestry controls	346 Korean ancestry cases, 305 Korean ancestry controls	1p36.12	WNT4	rs2473253-T	0.145	3E-6		1.415	[1.223-1.637]	Affymetrix [up to 755820]	N
756	chr1	22539570	22539571	rs2744726	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	1p36.12	NR	rs2744726-A	0.87	4E-8		0.031252176	[0.02-0.042] unit increase	NR [1977400] (imputed)	N
757	chr1	22554175	22554176	rs2807319	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p36.12	WNT4	rs2807319-G	0.88301	1E-8		0.02307	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
757	chr1	22556223	22556224	rs12751606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs12751606-C	NR	4E-10		0.0416	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
757	chr1	22572184	22572185	rs12755933	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	1p36.12	WNT4	rs12755933-C	0.27	1E-10		0.084	[0.059-0.109] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
757	chr1	22572184	22572185	rs12755933	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	1p36.12	WNT4	rs12755933-C	0.27	4E-10		0.088	[0.061-0.115] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
757	chr1	22573941	22573942	rs909814	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p36.12	NR	rs909814-C	0.57460965776591	7E-6	(IGP14)	0.1421	[0.08-0.204] unit increase	Illumina [~ 2500000] (imputed)	N
757	chr1	22573941	22573942	rs909814	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry female individuals	NA	1p36.12	intergenic	rs909814-T	0.39	9E-7		0.103	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
757	chr1	22577370	22577371	rs2807337	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p36.12	WNT4	rs2807337-T	0.3691	4E-12		0.1753	[0.13-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
757	chr1	22578575	22578576	rs5772996	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	1p36.12	WNT4, ZBTB40	rs5772996-TC	0.624	2E-7		1.15	[1.091-1.212]	Affymetrix [28509962] (imputed)	N
757	chr1	22584001	22584002	rs75965181	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	1p36.12	WNT4	rs75965181-A	0.0214	4E-26		0.12	[0.14-0.097] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
757	chr1	22586431	22586432	rs6682646	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.12	intergenic	rs6682646-A	0.1721	4E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
757	chr1	22587727	22587728	rs72647484	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	1p36.12	NR	rs72647484-T	NR	2E-10		1.13	[1.09-1.17]	Affymetrix, Illumina [> 10000000] (imputed)	N
757	chr1	22587727	22587728	rs72647484	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	1p36.12	WNT4, CDC42	rs72647484-?	0.91	1E-8		1.24	[1.15-1.33]	Affymetrix, Illumina [~ 10000000] (imputed)	N
757	chr1	22590330	22590331	rs2473238	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	1p36.12	WNT4, ZBTB40	rs2473238-G	0.55	9E-6		0.17	unit increase	Illumina [5600000] (imputed)	N
757	chr1	22594694	22594695	rs12741884	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	Intergenic	rs12741884-A	0.22	4E-8				Illumina [2276811] (imputed)	N
757	chr1	22594694	22594695	rs12741884	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	Intergenic	rs12741884-A	0.22	4E-8		0.0912	[NR] unit decrease	Illumina [2276811] (imputed)	N
757	chr1	22612689	22612690	rs12737805	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.12	MIR4418	rs12737805-A	0.7787	4E-13		0.0206	[0.015-0.026] unit increase	Affymetrix [19819130] (imputed)	N
757	chr1	22612689	22612690	rs12737805	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.12	MIR4418	rs12737805-A	0.7787	7E-13		0.0203	[0.015-0.026] unit increase	Affymetrix [19819130] (imputed)	N
757	chr1	22621150	22621151	rs115212331	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p36.12	intergenic	rs115212331-C	NR	9E-6		0.90989196	[0.6-1.22] unit decrease	Illumina [> 6200000] (imputed)	N
757	chr1	22622745	22622745	rs140800754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p36.12	RP11-415K20.1	rs140800754-TC	NR	7E-9		0.0260406	[0.017-0.035] unit decrease	Affymetrix [323858] (imputed)	N
757	chr1	22622745	22622745	rs140800754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p36.12	RP11-415K20.1	rs140800754-TC	NR	5E-9		0.0262576	[0.017-0.035] unit decrease	Affymetrix [127266] (imputed)	N
757	chr1	22623238	22623239	rs10799743	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.12	NR	rs10799743-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
757	chr1	22625310	22625311	rs10753534	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	1p36.12	NR	rs10753534-A	0.836	2E-9		0.0161	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
757	chr1	22626764	22626765	rs116532258	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	1p36.12	NR	rs116532258-T	NR	2E-6		4.779	z score increase	Illumina [5300000] (imputed)	N
757	chr1	22634175	22634176	rs149384519	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	1p36.12		rs149384519-C	NR	4E-7		0.5857115	[0.36-0.81] increase	Illumina [6334277] (imputed)	N
757	chr1	22645146	22645147	rs79773108	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.12		rs79773108-T	0.07	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
757	chr1	22648478	22648479	rs113784679	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	1p36.12	WNT4, ZBTB40	rs113784679-?	0.04	8E-9		0.511	[0.45-0.57] unit increase	Illumina [6379332] (imputed)	N
757	chr1	22653594	22653595	rs76225863	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	1p36.12	NR	rs76225863-G		1E-10		0.7742	[0.53-1.02] SD units decrease	NR [10700000] (imputed)	N
757	chr1	22658300	22658301	rs12128312	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1p36.12	WNT4, ZBTB40	rs12128312-A	0.04	7E-7	(African American)	0.62	[0.37-0.87] unit increase	Illumina [up to 13042663] (imputed)	N
757	chr1	22658484	22658485	rs12128356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.12		rs12128356-?	NR	2E-12				NR [~ 8900000] (imputed)	N
757	chr1	22671454	22671455	rs191270678	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs191270678-?	NR	3E-26		0.089506	[0.073-0.106] unit decrease	Affymetrix [20259828] (imputed)	N
758	chr1	22681213	22681214	rs34761529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	1p36.12		rs34761529-T	NR	2E-8		0.0775	[0.05-0.105] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
758	chr1	22681213	22681214	rs34761529	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.12	NR	rs34761529-C	0.795183	4E-9		0.0150896	[0.01-0.02] unit increase	NR [NR]	N
758	chr1	22681832	22681833	rs34818954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.12	NR	rs34818954-C	0.214644	3E-14		0.021072034	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22681832	22681833	rs34818954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.12	NR	rs34818954-C	0.214648	2E-10		0.017551403	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22682365	22682366	rs12742784	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	1p36.12	NR	rs12742784-T	0.2193	7E-10		0.1126	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
758	chr1	22682365	22682366	rs12742784	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	1p36.12	ZBTB40	rs12742784-C	0.21	1E-10		0.094	[0.065-0.123] unit increase	Affymetrix, Illumina [up to 37790451] (imputed)	N
758	chr1	22682365	22682366	rs12742784	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	1p36.12	ZBTB40	rs12742784-C	0.21	1E-10		0.099	[0.07-0.128] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
758	chr1	22683404	22683405	rs10917220	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.12	NR	rs10917220-?	NR	5E-9	(male)	0.20768	[0.14-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
758	chr1	22683404	22683405	rs10917220	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.12	NR	rs10917220-?	NR	1E-6		0.10829	[0.064-0.152] unit decrease	Affymetrix [7794483] (imputed)	N
758	chr1	22685033	22685034	rs35158109	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs35158109-T	0.0122	2E-9	(LDHB)	0.155	NR unit increase	Illumina [1671387] (imputed)	N
758	chr1	22690546	22690547	rs12048810	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1p36.12		rs12048810-G	0.890844	6E-7		0.0149411	[0.0091-0.0208] unit decrease	Illumina [13900000] (imputed)	N
758	chr1	22691596	22691597	rs11810751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.12		rs11810751-C	0.176452	4E-24		0.029661149	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22691596	22691597	rs11810751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.12		rs11810751-C	0.17642	2E-22		0.028286345	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22691596	22691597	rs11810751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.12		rs11810751-C	0.17642	2E-18		0.02537114	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22697211	22697212	rs34414754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	1p36.12		rs34414754-C	NR	1E-8		0.083	[0.054-0.112] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
758	chr1	22697211	22697212	rs34414754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.12		rs34414754-C	0.17647	8E-23		0.028403709	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22697859	22697860	rs6679981	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	1p36.12	NR	rs6679981-A	0.1811	5E-17		0.1162	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
758	chr1	22698446	22698447	rs7524102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.12		rs7524102-G	NR	1E-12		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
758	chr1	22698446	22698447	rs7524102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.12		rs7524102-G	NR	2E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
758	chr1	22698446	22698447	rs7524102	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	1p36.12	ZBTB40	rs7524102-A	0.830289	5E-18		0.087	[0.067-0.107] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
758	chr1	22698446	22698447	rs7524102	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	1p36.12	ZBTB40	rs7524102-A	0.830289	1E-20		0.0828	[0.065-0.1] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
758	chr1	22698446	22698447	rs7524102	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	1p36.12	WNT4, ZBTB40	rs7524102-G	0.214	3E-15		1.351	[1.254-1.456]	Illumina [238825]	N
758	chr1	22698446	22698447	rs7524102	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	1p36.12	RP11-415K20.1, WNT4	rs7524102-G	0.21	3E-9		1.28	[1.17-1.41]	Illumina [234939]	N
758	chr1	22698446	22698447	rs7524102	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	1p36.12	ZBTB40	rs7524102-G	NR	9E-7	(total hip)	0.44	[NR] unit decrease	Illumina [2543887] (imputed)	N
758	chr1	22698446	22698447	rs7524102	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	1p36.12	ZBTB40	rs7524102-G	NR	1E-6	(femoral neck)	0.14	[NR] unit decrease	Illumina [2543887] (imputed)	N
758	chr1	22698446	22698447	rs7524102	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p36.12	intergenic	rs7524102-A	0.83	2E-13		1.1	[1.05-1.16]	Affymetrix, Illumina [~ 1100000] (imputed)	N
758	chr1	22698446	22698447	rs7524102	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p36.12	intergenic	rs7524102-A	0.83	3E-7		1.1	[1.00-1.21]	Affymetrix [NR]	N
758	chr1	22698446	22698447	rs7524102	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	1p36.12	ZBTB40	rs7524102-G	0.17	3E-10		0.09	[0.06-0.12] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
758	chr1	22698446	22698447	rs7524102	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	1p36.12	intergenic	rs7524102-A	0.82	1E-16		0.15	[0.11-0.18] s.d. decrease	Illumina [305051]	N
758	chr1	22698446	22698447	rs7524102	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	1p36.12	ZBTB40	rs7524102-A	0.82	9E-9		0.11	[0.07-0.15] s.d. decrease	Illumina [301019]	N
758	chr1	22698446	22698447	rs7524102	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	1p36.12	ZBTB40	rs7524102-A	0.82	5E-16		0.15	[0.11-0.19] s.d. decrease	Illumina [301019]	N
758	chr1	22700350	22700351	rs34920465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.12		rs34920465-G	0.176488	6E-16		0.023374813	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
758	chr1	22700350	22700351	rs34920465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.12		rs34920465-G	0.176467	2E-14		0.022025732	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
758	chr1	22700350	22700351	rs34920465	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	1p36.12	NR	rs34920465-A	0.7968	9E-16		0.1008	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
758	chr1	22700350	22700351	rs34920465	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p36.12	NR	rs34920465-A	0.8185	3E-35	(European)	0.101	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
758	chr1	22700350	22700351	rs34920465	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.12	intergenic	rs34920465-?	NR	3E-13	(subset analysis)			Illumina [130052]	N
758	chr1	22700350	22700351	rs34920465	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.12	NR	rs34920465-?	NR	1E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
758	chr1	22700350	22700351	rs34920465	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	1p36.12	ZBTB40	rs34920465-?	NR	3E-8	(FNK)			Affymetrix, Illumina [5842825] (imputed)	N
758	chr1	22700350	22700351	rs34920465	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	1p36.12	ZBTB40	rs34920465-?	NR	3E-13	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
758	chr1	22701994	22701995	rs147378920	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	1p36.12	NR	rs147378920-G	NR	3E-6		0.6109	[0.35-0.87] SD units increase	NR [10700000] (imputed)	N
758	chr1	22701994	22701995	rs147378920	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	1p36.12	NR	rs147378920-G		3E-7		0.3863	[0.24-0.53] SD units increase	NR [10700000] (imputed)	N
758	chr1	22702186	22702187	rs34553872	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	ZBTB40	rs34553872-A	0.823072	1E-139		0.06084	[0.056-0.066] unit decrease	NR [13737936] (imputed)	N
758	chr1	22702230	22702231	rs12568930	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1p36.12	NR	rs12568930-T	0.82	3E-8		1.14	[NR]	NR [8546065] (imputed)	N
758	chr1	22702230	22702231	rs12568930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.12	NR	rs12568930-C	0.175857	7E-11		0.01577	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
758	chr1	22702230	22702231	rs12568930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs12568930-C	0.188892	3E-20				Affymetrix, Illumina [24653286] (imputed)	N
758	chr1	22702230	22702231	rs12568930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.12	NR	rs12568930-C	0.175758	8E-22		0.023386	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
758	chr1	22702230	22702231	rs12568930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs12568930-C	0.188773	2E-16				Affymetrix, Illumina [24558453] (imputed)	N
758	chr1	22702230	22702231	rs12568930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.12	NR	rs12568930-C	0.175827	9E-18		0.02097	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
758	chr1	22702230	22702231	rs12568930	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p36.12	Intergenic	rs12568930-?		2E-15				Illumina [9578670] (imputed)	N
758	chr1	22702230	22702231	rs12568930	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p36.12	Intergenic	rs12568930-?		8E-15				Illumina [9725440] (imputed)	N
758	chr1	22702230	22702231	rs12568930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p36.12	intergenic	rs12568930-C	0.1778	3E-18		0.0402616	[0.031-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr1	22702230	22702231	rs12568930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p36.12	intergenic	rs12568930-C	0.1778	7E-13		0.03343499	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr1	22702230	22702231	rs12568930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p36.12	intergenic	rs12568930-C	0.1778	1E-11		0.03163588	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr1	22702230	22702231	rs12568930	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p36.12	NR	rs12568930-A	0.84	4E-13	(EA)	1.1360025		Affymetrix, Illumina [~ 9000000] (imputed)	N
758	chr1	22702230	22702231	rs12568930	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p36.12	intergenic	rs12568930-T	0.821	1E-17		1.095	[1.054-1.138]	Affymetrix, Illumina [1230000] (imputed)	N
758	chr1	22702857	22702858	rs6696981	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	1p36.12	intergenic	rs6696981-G	0.86	2E-8		0.12	[0.08-0.16] s.d. decrease	Illumina [305051]	N
758	chr1	22703034	22703035	rs10493013	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls	18,779 European, East Asian or other ancestry cases, 32,078 European, East Asian or other ancestry controls	1p36.12		rs10493013-T	0.8286	6E-7		1.05		Affymetrix, Illumina [2539801] (imputed)	N
758	chr1	22703034	22703035	rs10493013	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p36.12	NR	rs10493013-T	0.8189	4E-43		0.1013	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
758	chr1	22704190	22704191	rs11799474	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p36.12	NR	rs11799474-G	NR	6E-9		0.0303989	[0.02-0.041] unit decrease	Affymetrix [16832071] (imputed)	N
758	chr1	22704190	22704191	rs11799474	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.12	intergenic	rs11799474-G	0.1766	2E-14		0.03549736	[0.026-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
758	chr1	22706433	22706434	rs6684375	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	1p36.12	ZBTB40	rs6684375-T	0.175671	2E-8		0.11816179	[0.077-0.159] unit decrease	Affymetrix [7288503] (imputed)	N
758	chr1	22706433	22706434	rs6684375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.12		rs6684375-?	NR	3E-20				NR [~ 8900000] (imputed)	N
758	chr1	22706433	22706434	rs6684375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs6684375-?	NR	6E-147				NR [~ 8900000] (imputed)	N
758	chr1	22706433	22706434	rs6684375	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs6684375-?	NR	1E-126		0.0631368	[0.058-0.068] unit decrease	Affymetrix [20259828] (imputed)	N
758	chr1	22706433	22706434	rs6684375	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	Intergenic	rs6684375-T	0.19	5E-9				Illumina [2276811] (imputed)	N
758	chr1	22706433	22706434	rs6684375	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	1p36.12	Intergenic	rs6684375-T	0.19	2E-6		0.0842	[NR] unit increase	Illumina [2276811] (imputed)	N
758	chr1	22710876	22710877	rs34963268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.12		rs34963268-C	0.176129	1E-14		0.02244588	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
758	chr1	22710876	22710877	rs34963268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.12		rs34963268-?	NR	3E-8				NR [~ 8900000] (imputed)	N
758	chr1	22710876	22710877	rs34963268	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs34963268-?	NR	2E-126		0.0630582	[0.058-0.068] unit decrease	Affymetrix [20259828] (imputed)	N
758	chr1	22710876	22710877	rs34963268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs34963268-G	0.824657	3E-25	(men)	0.0676047	[0.055-0.081] unit decrease	NR [17166351] (imputed)	N
758	chr1	22710876	22710877	rs34963268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs34963268-G	0.823891	1E-50		0.0642023	[0.056-0.073] unit decrease	NR [17166351] (imputed)	N
758	chr1	22710876	22710877	rs34963268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs34963268-G	0.823221	1E-25	(women)	0.0601535	[0.048-0.072] unit decrease	NR [17166351] (imputed)	N
758	chr1	22711472	22711473	rs6426749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs6426749-G	0.820099	2E-28				Affymetrix, Illumina [22063850] (imputed)	N
758	chr1	22711472	22711473	rs6426749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.12	NR	rs6426749-G	0.822695	5E-30		0.027898	[0.023-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
758	chr1	22711472	22711473	rs6426749	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls	18,779 European, East Asian or other ancestry cases, 32,078 European, East Asian or other ancestry controls	1p36.12		rs6426749-G	0.8288	2E-7		1.05		Affymetrix, Illumina [2539801] (imputed)	N
758	chr1	22711472	22711473	rs6426749	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p36.12	ZBTB40	rs6426749-C	0.17	7E-57		0.11	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
758	chr1	22711472	22711473	rs6426749	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	1p36.12	ZBTB40	rs6426749-C	0.17	9E-8		0.08	[0.05-0.11] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
758	chr1	22725824	22725825	rs2185341	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	1p36.12	intergenic	rs2185341-T	0.153	2E-6		2.412	[NR]	Affymetrix [633420]	N
758	chr1	22729792	22729793	rs11364492	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs11364492-?	NR	1E-27		0.0369574	[0.03-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
758	chr1	22729792	22729793	rs11364492	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs11364492-AT	0.486262	8E-16	(men)	0.0430224	[0.032-0.054] unit decrease	NR [17166351] (imputed)	N
758	chr1	22729792	22729793	rs11364492	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs11364492-AT	0.484932	7E-36		0.044084	[0.037-0.051] unit decrease	NR [17166351] (imputed)	N
758	chr1	22729792	22729793	rs11364492	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.12	ZBTB40	rs11364492-AT	0.483771	8E-20	(women)	0.043382	[0.034-0.053] unit decrease	NR [17166351] (imputed)	N
758	chr1	22731808	22731809	rs4414016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs4414016-?	NR	3E-26				NR [~ 8900000] (imputed)	N
758	chr1	22732385	22732386	rs11584259	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	1p36.12	NR	rs11584259-?	NR	7E-6		0.0821	[0.046-0.118] unit decrease	Illumina [at least 560000] (imputed)	N
758	chr1	22734858	22734859	rs6680369	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	ZBTB40	rs6680369-C	0.388504	2E-25		0.0198042	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
758	chr1	22735905	22735906	rs4655059	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs4655059-?	NR	1E-88		0.0416391	[0.037-0.046] unit increase	Affymetrix [20259828] (imputed)	N
758	chr1	22737945	22737946	rs111724808	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p36.12	NR	rs111724808-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
758	chr1	22779826	22779827	rs61769193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.12		rs61769193-?	NR	1E-8				NR [~ 8900000] (imputed)	N
759	chr1	22855813	22855814	rs41307777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs41307777-A	NR	1E-9		0.0531	[0.036-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr1	22895819	22895820	rs45498698	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	1p36.12	NR	rs45498698-G	NR	9E-8		0.617	[0.39-0.84] SD units decrease	NR [10700000] (imputed)	N
759	chr1	22895819	22895820	rs45498698	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	1p36.12	NR	rs45498698-G		1E-6		0.3339	[0.2-0.47] SD units decrease	NR [10700000] (imputed)	N
759	chr1	22895819	22895820	rs45498698	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	1p36.12	NR	rs45498698-G		1E-8		0.3844	[0.25-0.52] SD units decrease	NR [10700000] (imputed)	N
759	chr1	22902771	22902772	rs56218493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.12	NR	rs56218493-T	NR	2E-9		0.024	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
759	chr1	22911194	22911195	rs75903500	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p36.12	EPHA8	rs75903500-C	0.08	2E-11		6.7	z-score increase	Affymetrix [4311822] (imputed)	N
759	chr1	22922545	22922546	rs209692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QC	5,368 Icelandic ancestry individuals	NA	1p36.12		rs209692-A	0.2929	3E-91		0.421977	[0.38-0.46] unit increase	Illumina [7506463] (imputed)	N
759	chr1	22930182	22930183	rs77999880	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	1p36.12	NR	rs77999880-G		6E-6		0.5047	[0.29-0.72] SD units increase	NR [10700000] (imputed)	N
759	chr1	22935517	22935518	rs75134464	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	1p36.12	NR	rs75134464-G		4E-30		1.4872	[1.22-1.76] SD units decrease	NR [10700000] (imputed)	N
760	chr1	22944208	22944209	rs78865058	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.12	C1QC	rs78865058-G	0.95390625	2E-78	(C1QC, 14100_63_3)	1.1016614	[0.99-1.21] unit decrease	Illumina [> 1000000] (imputed)	N
760	chr1	22944208	22944209	rs78865058	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	C1QC	rs78865058-A	0.042	4E-71	(Complement C1q subcomponent subunit C, C1QC.14100.63.3)	1.08	[0.96-1.2] unit increase	Affymetrix [10572788] (imputed)	N
760	chr1	22951800	22951801	rs141126950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	NR	rs141126950-T	0.014	1E-18	(Complement C1q subcomponent subunit C, C1QC.14100.63.3)	0.94	[0.72-1.16] unit increase	Affymetrix [10572788] (imputed)	N
760	chr1	22964175	22964176	rs17887074	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	1p36.12	C1QA	rs17887074-?	NR	1E-73				Illumina [11329225] (imputed)	N
760	chr1	22970641	22970642	rs15940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QC	5,368 Icelandic ancestry individuals	NA	1p36.12		rs15940-T	0.2231	3E-48		0.334493	[0.29-0.38] unit decrease	Illumina [7506463] (imputed)	N
760	chr1	22970907	22970908	rs12073436	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QC	5,368 Icelandic ancestry individuals	NA	1p36.12		rs12073436-T	0.08849	9E-52		0.510643	[0.44-0.58] unit increase	Illumina [7506463] (imputed)	N
760	chr1	22970907	22970908	rs12073436	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	NR	rs12073436-T	0.089	3E-29	(Complement C1q subcomponent subunit C, C1QC.14100.63.3)	0.49	[0.41-0.57] unit increase	Affymetrix [10572788] (imputed)	N
760	chr1	22977302	22977303	rs72651389	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QC	5,368 Icelandic ancestry individuals	NA	1p36.12		rs72651389-G	0.2508	7E-9		0.129452	[0.086-0.173] unit increase	Illumina [7506463] (imputed)	N
760	chr1	22997849	22997850	rs187784918	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	1p36.12	NR	rs187784918-T	NR	3E-7		0.6029	[0.37-0.83] SD units decrease	NR [10700000] (imputed)	N
760	chr1	22997849	22997850	rs187784918	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	1p36.12	NR	rs187784918-T		1E-7		0.3765	[0.24-0.52] SD units decrease	NR [10700000] (imputed)	N
760	chr1	23015237	23015238	rs17433836	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	1p36.12	ASAP3, E2F2, TCEA3	rs17433836-C	0.0904838	5E-7		1.596	[1.329 - 1.916]	Illumina [5397362] (imputed)	N
760	chr1	23017563	23017564	rs294227	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	NR	rs294227-C	0.976	8E-12	(Complement C1q subcomponent subunit C, C1QC.14100.63.3)	0.57	[0.41-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
760	chr1	23046886	23046887	rs78655189	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	1p36.12	NR	rs78655189-C		3E-32		1.6517	[1.36-1.94] SD units decrease	NR [10700000] (imputed)	N
760	chr1	23054719	23054723	rs144045260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	EPHB2	rs144045260-C	0.08	5E-24	(Ephrin type-B receptor 2, EPHB2.5077.28.3)	0.46	[0.36-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
760	chr1	23060950	23060951	rs28455953	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB2	5,362 Icelandic ancestry individuals	NA	1p36.12		rs28455953-G	0.09035	3E-37		0.389565	[0.33-0.45] unit decrease	Illumina [7506463] (imputed)	N
760	chr1	23060950	23060951	rs28455953	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.12	EPHB2	rs28455953-A	0.906875	3E-8	(EPHB2, 5077_28_3)	0.2333909	[0.15-0.32] unit increase	Illumina [> 1000000] (imputed)	N
760	chr1	23061550	23061551	rs6687487	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.12	EPHB2	rs6687487-G	0.90578125	9E-25	(EPHB2, 8348_4_3)	0.41440096	[0.34-0.49] unit increase	Illumina [> 1000000] (imputed)	N
760	chr1	23061550	23061551	rs6687487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	EPHB2	rs6687487-A	0.08	4E-19	(Ephrin type-B receptor 2, EPHB2.8348.4.3)	0.41	[0.31-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
760	chr1	23061550	23061551	rs6687487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.12	EPHB2	rs6687487-A	0.08	1E-42	(Ephrin type-B receptor 2, EPHB2.8225.86.3)	0.61	[0.53-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
760	chr1	23061550	23061551	rs6687487	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p36.12	EPHB2	rs6687487-A	0.08551308	3E-12	(EA, Ephrin type-B receptor 2)	0.5293	[0.38-0.68] unit decrease	Affymetrix [509946]	N
760	chr1	23061957	23061958	rs2043970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB2	5,365 Icelandic ancestry individuals	NA	1p36.12		rs2043970-C	0.09017	4E-40		0.414531	[0.35-0.48] unit decrease	Illumina [7506463] (imputed)	N
760	chr1	23061957	23061958	rs2043970	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.12	EPHB2	rs2043970-A	0.90578125	1E-26	(EPHB2, 8225_86_3)	0.436857	[0.36-0.52] unit increase	Illumina [> 1000000] (imputed)	N
761	chr1	23175045	23175046	rs7514049	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs7514049-C	0.01568	1E-8	(ATIC)	0.2099	NR unit decrease	Illumina [1671387] (imputed)	N
762	chr1	23210558	23210559	rs67142165	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	1p36.12	EPHB2	rs67142165-T	0.13	1E-8		0.034	[0.022-0.046] unit increase	Illumina [7411206] (imputed)	N
762	chr1	23210558	23210559	rs67142165	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels	629 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 590 Vis (founder/genetic isolate) individuals	NA	1p36.12	EPHB2	rs67142165-T	0.13	9E-9		0.34	[0.22-0.46] pmol/L increase	Illumina [7411206] (imputed)	N
762	chr1	23243001	23243002	rs7514453	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p36.12	NR	rs7514453-?	NR	1E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
762	chr1	23259420	23259421	rs10158878	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p36.12	EPHB2	rs10158878-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
762	chr1	23271503	23271504	rs2903995	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p36.12	NA	rs2903995-A	0.3781	2E-11		0.0122	[0.0087-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
762	chr1	23274796	23274797	rs116274150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	LACTBL1	rs116274150-A	NR	3E-10		0.0348931	[0.024-0.046] unit decrease	Affymetrix [321016] (imputed)	N
762	chr1	23286223	23286224	rs11577583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.12	LACTBL1	rs11577583-C	0.686778	4E-9		0.0177489	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
762	chr1	23286751	23286752	rs751168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.12	LACTBL1	rs751168-G	0.690836	3E-9		0.014268125	[0.0096-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
762	chr1	23287518	23287519	rs4372224	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.12	NR	rs4372224-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
762	chr1	23290763	23290764	rs138747463	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.12	NR	rs138747463-G	0.01916	4E-10	(AKR1B10)	1.793	NR unit increase	Illumina [1671387] (imputed)	N
762	chr1	23294135	23294136	rs10917335	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p36.12	LACTBL1	rs10917335-A	0.6643	4E-6		0.0338	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
762	chr1	23313352	23313353	rs10799778	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.12	LACTBL1	rs10799778-T	0.166193	8E-12		0.0125819	[0.009-0.0162] unit increase	Affymetrix [12370749]	N
762	chr1	23313352	23313353	rs10799778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p36.12		rs10799778-?	NR	2E-12				NR [~ 8900000] (imputed)	N
763	chr1	23332149	23332150	rs674136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p36.12		rs674136-C	NR	3E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
763	chr1	23341518	23341519	rs6675101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p36.12		rs6675101-A	NR	1E-10		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
763	chr1	23345050	23345051	rs561136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.12	NR	rs561136-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
763	chr1	23345050	23345051	rs561136	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p36.12	NA	rs561136-T	0.8691	1E-14		0.0186	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
763	chr1	23369276	23369277	rs137993948	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p36.12	KDM1A	rs137993948-T		1E-8		0.196	unit decrease	Affymetrix [at least 2696785] (imputed)	N
763	chr1	23376540	23376541	rs10917347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1p36.12		rs10917347-G	0.457489	5E-15		0.0272422	[0.02-0.034] unit increase	Illumina [13476165] (imputed)	N
763	chr1	23376540	23376541	rs10917347	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	1p36.12	KDM1A	rs10917347-?	NR	6E-14		0.03069	[0.023-0.039] unit increase novel	Illumina [6108953] (imputed)	N
763	chr1	23398064	23398065	rs12409321	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.12		rs12409321-C	0.49	2E-21		9.51	z score increase	Affymetrix [9061022] (imputed)	N
763	chr1	23398064	23398065	rs12409321	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.12	KDM1A	rs12409321-?		2E-12		0.028	[0.02-0.036] unit decrease	Illumina [31500000] (imputed)	N
763	chr1	23405793	23405794	rs2072945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.12		rs2072945-C	NR	5E-8		0.0147	[0.0094-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
763	chr1	23405793	23405794	rs2072945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.12	NR	rs2072945-C	0.854796	5E-11		0.016983	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
763	chr1	23419373	23419374	rs3765407	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p36.12	LUZP1	rs3765407-G	0.18269999999999997	3E-10		0.0146	[0.01-0.019] unit increase	Illumina [246328]	N
763	chr1	23425138	23425139	rs11578046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	LUZP1	rs11578046-A	NR	1E-10		0.0192322	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
763	chr1	23425138	23425139	rs11578046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.12		rs11578046-?	NR	3E-29				NR [~ 8900000] (imputed)	N
763	chr1	23435537	23435538	rs16827981	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	1p36.12		rs16827981-A	0.18	6E-8		2.13	[1.37-2.89] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
763	chr1	23446440	23446441	rs10799792	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	1p36.12	LUZP1, KDM1A	rs10799792-T	0.62	3E-9	(SAI QRST)	0.08	[0.055-0.105] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
764	chr1	23470459	23470460	rs6426786	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p36.12	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs6426786-?		7E-11				NR [7428630] (imputed)	N
764	chr1	23484903	23484904	rs9426691	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	1p36.12	Intergenic	rs9426691-G		4E-6		0.032	[0.019-0.046] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
764	chr1	23491207	23491208	rs766316829	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1p36.12	LUZP1	rs766316829-T	8.0E-4	4E-6		2.87542	NR	Affymetrix, Illumina [30341632] (imputed)	N
764	chr1	23493993	23493993	rs10683530	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.12	LUZP1	rs10683530-G	0.5535	8E-24		0.019	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
764	chr1	23495319	23495320	rs115892653	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p36.12	NR	rs115892653-A	0.1693	8E-11				NR [9056863] (imputed)	N
764	chr1	23504794	23504795	rs2806561	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p36.12	LUZP1	rs2806561-A	0.567	2E-20		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
764	chr1	23506968	23506969	rs11578642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	LUZP1	rs11578642-A	NR	2E-14		0.02866	[0.021-0.036] unit decrease	Affymetrix [321016] (imputed)	N
764	chr1	23510829	23510830	rs75978447	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p36.12		rs75978447-A	0.17	2E-9		6.02	z score increase	Affymetrix [9061022] (imputed)	N
764	chr1	23510829	23510830	rs75978447	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p36.12		rs75978447-A	0.17	3E-12		6.96	z score increase	Affymetrix [9061022] (imputed)	N
764	chr1	23510829	23510830	rs75978447	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p36.12	NR	rs75978447-A	0.1776	7E-9				NR [9056863] (imputed)	N
764	chr1	23527004	23527005	rs2806570	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.12	HTR1D	rs2806570-T	0.6818	2E-7		0.0383	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
764	chr1	23536890	23536891	rs1738475	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.12	HTR1D	rs1738475-C	0.59	3E-12		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
764	chr1	23538102	23538106	rs371633505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.12		rs371633505-T	0.22482	3E-9		0.016310247	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
764	chr1	23574050	23574051	rs9662343	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1p36.12		rs9662343-C	0.73873	9E-7		0.03746	[0.023-0.052] unit decrease	Affymetrix [15580782] (imputed)	N
765	chr1	23605285	23605286	rs5773038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.12	RP5-1057J7.6	rs5773038-A	0.171995	9E-10		0.018087026	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
765	chr1	23613343	23613344	rs12043534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.12	RP5-1057J7.6	rs12043534-T	NR	3E-8		0.0179076	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
765	chr1	23613343	23613344	rs12043534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.12	RP5-1057J7.6	rs12043534-T	NR	6E-9		0.0190032	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
765	chr1	23614429	23614429	rs139525508	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.12		rs139525508-?	NR	1E-9		0.0173163	[0.012-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
765	chr1	23629054	23629055	rs11590440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.12	HNRNPR	rs11590440-C	NR	2E-10		0.0244139	[0.017-0.032] unit decrease	Affymetrix [321016] (imputed)	N
765	chr1	23639008	23639009	rs1535179	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p36.12	NR	rs1535179-A	0.9337	7E-8		0.0193	[0.012-0.026] unit decrease	NR [~ 27400000] (imputed)	N
765	chr1	23639008	23639009	rs1535179	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p36.12	NR	rs1535179-A	0.9336	1E-8		0.0202	[0.013-0.027] unit decrease	NR [~ 27400000] (imputed)	N
765	chr1	23642836	23642837	rs10917370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.12	HNRNPR	rs10917370-G	0.177499	4E-13		0.021228231	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
765	chr1	23642836	23642837	rs10917370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs10917370-G	0.18567	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
765	chr1	23663031	23663032	rs28656857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p36.12		rs28656857-C	NR	3E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
765	chr1	23680629	23680630	rs12563200	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p36.12	TCEA3, HTR1D, ZNF436, C1orf213, RP5-1057J7.7	rs12563200-C	0.8679	8E-15		7.776	NR z score decrease	Illumina [26237160] (imputed)	N
765	chr1	23681231	23681232	rs2749141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.12	ZNF436	rs2749141-G	NR	4E-8		0.0217377	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
765	chr1	23681231	23681232	rs2749141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.12	ZNF436	rs2749141-G	NR	9E-9		0.0229257	[0.015-0.031] unit increase	Affymetrix [321169] (imputed)	N
765	chr1	23692228	23692229	rs4525087	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p36.12	ZNF436	rs4525087-C	0.65	5E-13		0.283	[0.099-0.467] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
765	chr1	23692228	23692229	rs4525087	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	1p36.12	ZNF436	rs4525087-?	NR	5E-12		0.0267	[0.019-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
765	chr1	23694020	23694021	rs588641	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p36.12	NR	rs588641-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
765	chr1	23695274	23695275	rs680386	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.12	ZNF436	rs680386-G	0.820762	1E-11		0.0161856	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
765	chr1	23697616	23697617	rs638722	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p36.12	TCEA3	rs638722-T	0.8208	4E-9		0.01492985	[0.01-0.0199] unit decrease	Illumina [9339358] (imputed)	N
765	chr1	23699167	23699168	rs2144734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.12		rs2144734-T	NR	8E-28		0.0191	[0.016-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
765	chr1	23699339	23699340	rs2749153	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p36.12	ZNF436-AS1	rs2749153-A	0.6894	3E-26		0.0033	[0.0027-0.0039] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
765	chr1	23699339	23699340	rs2749153	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	1p36.12	ZNF436-AS1	rs2749153-A	0.5739	6E-10		0.0042	[0.0028-0.0056] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
765	chr1	23699339	23699340	rs2749153	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	1p36.12	ZNF436-AS1	rs2749153-A	0.69	5E-6		1.0394	[1.0222-1.0569]	Affymetrix, Illumina [9585923] (imputed)	N
765	chr1	23700810	23700811	rs9887921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.12	C1orf213	rs9887921-T	NR	1E-9		0.0338156	[0.023-0.045] unit increase	Affymetrix [319769] (imputed)	N
765	chr1	23700810	23700811	rs9887921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p36.12	C1orf213	rs9887921-T	NR	5E-9		0.0329341	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
765	chr1	23700810	23700811	rs9887921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.12	C1orf213	rs9887921-T	NR	4E-8		0.0310918	[0.02-0.042] unit increase	Affymetrix [321169] (imputed)	N
765	chr1	23700810	23700811	rs9887921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.12	NR	rs9887921-T	NR	2E-11		0.0305	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
765	chr1	23700810	23700811	rs9887921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.12	NR	rs9887921-T	NR	6E-12		0.0314	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
765	chr1	23702383	23702384	rs9887774	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	1p36.12	ZNF436-AS1, TCEA3	rs9887774-?	NR	3E-11		0.02645	[0.019-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
765	chr1	23702530	23702531	rs9887775	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p36.12	ZNF436-AS1	rs9887775-A	0.8137	2E-15		0.0035	[0.0027-0.0043] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
765	chr1	23708485	23708486	rs7532311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1p36.12		rs7532311-C	0.217442	8E-17		0.0287095	[0.022-0.035] unit decrease	Illumina [13478778] (imputed)	N
765	chr1	23708485	23708486	rs7532311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.12	TCEA3	rs7532311-C	NR	3E-9		0.0347459	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
765	chr1	23710474	23710475	rs2298632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p36.12		rs2298632-T	NR	4E-12		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	9E-18	(198 ms)	0.0465244	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	9E-16	(202 ms)	0.0436559	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	9E-15	(182 ms)	0.0425499	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	9E-15	(180 ms)	0.0424809	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	9E-10	(162 ms)	0.0338907	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	8E-16	(212 ms)	0.043801	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	8E-13	(222 ms)	0.0398094	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	8E-12	(230 ms)	0.0378402	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	8E-12	(170 ms)	0.0369947	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	8E-11	(154 ms)	0.0356211	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	7E-16	(200 ms)	0.0437832	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	7E-14	(176 ms)	0.0404628	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	7E-13	(226 ms)	0.039406	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	7E-10	(164 ms)	0.0334671	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	6E-15	(218 ms)	0.0423428	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	6E-13	(224 ms)	0.0394709	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	5E-15	(186 ms)	0.0425073	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	5E-14	(220 ms)	0.0407733	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-9	(240 ms)	0.0327456	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-16	(210 ms)	0.0441874	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-16	(204 ms)	0.0443927	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-16	(192 ms)	0.0442412	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-16	(188 ms)	0.0445673	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-14	(184 ms)	0.0413918	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-13	(172 ms)	0.03923	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	4E-10	(156 ms)	0.0344598	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-8	(158 ms)	0.0313784	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-8	(152 ms)	0.0308339	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-18	(196 ms)	0.0472319	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-16	(190 ms)	0.0452095	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-15	(208 ms)	0.0435365	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-14	(174 ms)	0.0415953	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-12	(228 ms)	0.0385488	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	3E-10	(234 ms)	0.0354525	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-9	(238 ms)	0.0334688	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-9	(236 ms)	0.0333669	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-8	(160 ms)	0.0321538	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-15	(216 ms)	0.0431271	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-15	(206 ms)	0.0434032	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-11	(232 ms)	0.0372387	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-11	(168 ms)	0.0358672	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	2E-10	(166 ms)	0.0342303	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	1E-16	(194 ms)	0.0449033	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	1E-15	(214 ms)	0.0432239	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.518017	1E-13	(178 ms)	0.0401794	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.12	TCEA3	rs2298632-T	0.498076	2E-10		0.014405705	[0.01-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1p36.12	TCEA3	rs2298632-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p36.12	TCEA3	rs2298632-C	0.501926	2E-13		0.0142985	[0.011-0.018] unit decrease	Affymetrix [NR] (imputed)	N
765	chr1	23710474	23710475	rs2298632	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1p36.12	NR	rs2298632-?	NR	5E-7		1.100672	[0.67-1.53] unit increase	Illumina [26659972] (imputed)	N
765	chr1	23710474	23710475	rs2298632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.12		rs2298632-?	NR	7E-16				NR [~ 8900000] (imputed)	N
765	chr1	23710474	23710475	rs2298632	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p36.12	NR	rs2298632-C	0.51	7E-17		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
765	chr1	23710474	23710475	rs2298632	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p36.12	NR	rs2298632-C	0.51	5E-8				Affymetrix [2446094] (imputed)	N
765	chr1	23710474	23710475	rs2298632	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1p36.12	TCEA3	rs2298632-T	0.46	2E-7		1.15	[NR] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
765	chr1	23710474	23710475	rs2298632	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1p36.12	TCEA3	rs2298632-T	0.496	1E-14		0.7	[0.52-0.88] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
765	chr1	23720184	23720185	rs4648892	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p36.12	TCEA3	rs4648892-C	0.281526	2E-13		0.015952	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
766	chr1	23747995	23747996	rs1184556173	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p36.12	NR	rs1184556173-G	0.7264	2E-14		0.001864	[0.0014-0.0024] unit increase	Affymetrix [NR] (imputed)	N
766	chr1	23747996	23747997	rs11340914	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.12	TCEA3	rs11340914-?	0.6579	2E-11		0.02	[0.014-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
766	chr1	23747996	23747997	rs11340914	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.12	TCEA3	rs11340914-?	0.6579	4E-8		0.0163	[0.01-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
766	chr1	23755512	23755513	rs1198430	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p36.12	ASAP3	rs1198430-T	0.104	1E-7	(Trans-ethnic initial)	0.0269	[0.016-0.038] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
766	chr1	23766232	23766233	rs1077514	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.12	ASAP3	rs1077514-C	0.15	6E-9		0.03	[NR] unit decrease	NR [NR] (imputed)	N
766	chr1	23769673	23769674	rs2510072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.12	NR	rs2510072-G	NR	3E-14		0.0289	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
766	chr1	23769673	23769674	rs2510072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.12	NR	rs2510072-G	NR	5E-15		0.0297	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
766	chr1	23769673	23769674	rs2510072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p36.12	NR	rs2510072-G	NR	1E-9		0.0241	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
766	chr1	23770515	23770516	rs1767147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p36.12		rs1767147-A	0.135249	5E-8		0.0323169	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
766	chr1	23784964	23784965	rs534417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p36.12		rs534417-A	0.124992	1E-10		0.0391707	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23784964	23784965	rs534417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p36.12		rs534417-A	0.124992	4E-9		0.0359155	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
766	chr1	23784964	23784965	rs534417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1p36.12		rs534417-A	0.125004	4E-8		0.0339275	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
766	chr1	23787020	23787021	rs6424109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1p36.12		rs6424109-C	0.125431	6E-9		0.035818	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
766	chr1	23787020	23787021	rs6424109	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p36.12	ASAP3	rs6424109-C	0.125772	3E-11		0.0199173	[0.014-0.026] unit decrease	Affymetrix [NR] (imputed)	N
766	chr1	23792008	23792009	rs612177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1p36.12		rs612177-G	0.106687	3E-8		0.0374954	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23792008	23792009	rs612177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p36.12		rs612177-G	0.106687	1E-8		0.0376649	[0.025-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795171	23795173	rs79833369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p36.12		rs79833369-C	NR	8E-18		0.0223	[0.017-0.027] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
766	chr1	23795171	23795173	rs79833369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p36.12		rs79833369-C	NR	1E-8		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
766	chr1	23795176	23795177	rs61778883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p36.12		rs61778883-C	NR	1E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
766	chr1	23795176	23795177	rs61778883	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p36.12	ASAP3	rs61778883-T	0.128719	2E-9		0.0186523	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124656	1E-10		0.0380099	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124656	3E-10		0.0385219	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	1E-11		0.0416784	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	1E-9		0.0357381	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	3E-10		0.0388345	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	1E-10		0.0391636	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124656	9E-9		0.0357409	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124656	2E-8		0.0346081	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	3E-10		0.0370729	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	3E-9		0.0344924	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124643	2E-10		0.0392033	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p36.12		rs375390883-TAG	0.124656	1E-9		0.0379806	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
766	chr1	23795183	23795183	rs375390883	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p36.12	NR	rs375390883-TAG	0.124841	3E-17		0.0240988	[0.019-0.03] unit decrease	Affymetrix [15000001]	N
766	chr1	23799000	23799001	rs10917386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p36.12		rs10917386-T	NR	2E-16		0.0192	[0.015-0.024] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
766	chr1	23804916	23804917	rs1986133	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p36.12	ASAP3	rs1986133-C	0.310515	1E-27		0.0059173	[0.0048-0.007] unit decrease	Affymetrix [13995440] (imputed)	N
766	chr1	23805776	23805779	rs61644781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.12		rs61644781-A	NR	8E-13		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
766	chr1	23805776	23805779	rs61644781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.12		rs61644781-A	NR	3E-29		0.0224	[0.018-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
766	chr1	23831959	23831960	rs2999140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.12	E2F2	rs2999140-T	NR	2E-9		0.0260981	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
766	chr1	23831959	23831960	rs2999140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.12	E2F2	rs2999140-T	NR	2E-9		0.0260718	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
766	chr1	23833610	23833611	rs12026768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs12026768-G	0.504092	3E-43				Affymetrix, Illumina [22063850] (imputed)	N
766	chr1	23833610	23833611	rs12026768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.12	NR	rs12026768-G	0.491797	4E-46		0.026771	[0.023-0.03] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
766	chr1	23834437	23834438	rs41300116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.12	NR	rs41300116-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
766	chr1	23834485	23834486	rs3820028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.12		rs3820028-?	NR	4E-9				NR [~ 8900000] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.12	E2F2	rs2811972-C	0.548227	6E-11		0.014618644	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.12	E2F2	rs2811972-C	0.548389	1E-11		0.015028228	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.12	E2F2	rs2811972-C	0.54839	1E-15		0.017748706	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs2811972-C	0.600825	3E-71				Affymetrix, Illumina [24246363] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.12	NR	rs2811972-C	0.550238	6E-71		0.032372	[0.029-0.036] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs2811972-C	0.605337	9E-58				Affymetrix, Illumina [20825802] (imputed)	N
766	chr1	23840569	23840570	rs2811972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.12	NR	rs2811972-C	0.549562	3E-58		0.031026	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
766	chr1	23840569	23840570	rs2811972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.12		rs2811972-?	NR	1E-54				NR [~ 8900000] (imputed)	N
766	chr1	23840615	23840616	rs35229050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.12		rs35229050-T	NR	1E-35		0.0299	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
766	chr1	23840615	23840616	rs35229050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p36.12		rs35229050-T	NR	2E-31		0.028	[0.023-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
766	chr1	23840615	23840616	rs35229050	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1p36.12		rs35229050-T	NR	2E-9		0.22	[0.14-0.3] unit decrease	Illumina [97506867]	N
766	chr1	23840615	23840616	rs35229050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.12	E2F2	rs35229050-T	0.54475	1E-45		0.031756576	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23840615	23840616	rs35229050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.12	E2F2	rs35229050-T	0.544591	1E-56		0.035641752	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23840615	23840616	rs35229050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.12	E2F2	rs35229050-T	0.544767	4E-47		0.0349073	[0.031-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23840615	23840616	rs35229050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.12	E2F2	rs35229050-T	0.54478	1E-42		0.030555816	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23840615	23840616	rs35229050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.12	E2F2	rs35229050-T	0.5455	2E-13		0.02624126	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23840615	23840616	rs35229050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p36.12	E2F2	rs35229050-T	0.5455	7E-13		0.02572019	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23841369	23841370	rs3218192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p36.12	E2F2	rs3218192-T	0.5081	2E-12		0.02514536	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23845109	23845110	rs2811974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.12		rs2811974-?	NR	2E-19				NR [~ 8900000] (imputed)	N
766	chr1	23847463	23847464	rs2075995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.12		rs2075995-A	NR	1E-15		0.0131	[0.01-0.0162] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
766	chr1	23847463	23847464	rs2075995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.12	E2F2	rs2075995-A	0.501242	9E-41		0.029503876	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23847463	23847464	rs2075995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.12	E2F2	rs2075995-A	0.501124	1E-16		0.018312914	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23847463	23847464	rs2075995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.12		rs2075995-?	NR	2E-37				NR [~ 8900000] (imputed)	N
766	chr1	23847463	23847464	rs2075995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.12		rs2075995-?	NR	2E-22				NR [~ 8900000] (imputed)	N
766	chr1	23847463	23847464	rs2075995	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p36.12	E2F2	rs2075995-A	0.502	2E-16		0.0331247	[0.025-0.041] unit decrease	Affymetrix [16832071] (imputed)	N
766	chr1	23847463	23847464	rs2075995	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.12	E2F2	rs2075995-A	0.501	1E-24		0.03606049	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23847463	23847464	rs2075995	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p36.12	E2F2	rs2075995-A	0.5011	8E-11		0.02306474	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23849035	23849036	rs2742972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.12		rs2742972-G	NR	8E-13		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
766	chr1	23849035	23849036	rs2742972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.12	E2F2	rs2742972-G	0.620509	2E-14		0.017365035	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23849044	23849044	rs3218164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p36.12		rs3218164-CCTT	NR	3E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
766	chr1	23849044	23849044	rs3218164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p36.12	NR	rs3218164-I	0.618731	2E-14		0.016208	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
766	chr1	23849764	23849765	rs3218160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.12	E2F2	rs3218160-C	0.620533	2E-9		0.013854409	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23850022	23850023	rs6684709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.12	NR	rs6684709-C	0.620492	2E-27		0.020589	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
766	chr1	23850022	23850023	rs6684709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.12		rs6684709-?	NR	6E-19				NR [~ 8900000] (imputed)	N
766	chr1	23850022	23850023	rs6684709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p36.12	E2F2	rs6684709-C	0.62	1E-9		0.02243384	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
766	chr1	23850362	23850363	rs2075998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs2075998-C	0.660041	5E-31				Affymetrix, Illumina [24649327] (imputed)	N
766	chr1	23850589	23850590	rs60918921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.12	E2F2	rs60918921-A	0.617903	2E-20		0.021498175	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23850589	23850590	rs60918921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.12	E2F2	rs60918921-A	0.617938	3E-16		0.018965894	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr1	23851786	23851787	rs3218148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p36.12		rs3218148-A	NR	3E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
766	chr1	23853016	23853017	rs2742973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.12	E2F2	rs2742973-C	0.620405	9E-16		0.018395469	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
766	chr1	23853016	23853017	rs2742973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.12	NR	rs2742973-C	0.670224	1E-19				Affymetrix, Illumina [24332387] (imputed)	N
766	chr1	23853016	23853017	rs2742973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.12	NR	rs2742973-C	0.622287	2E-21		0.01814	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
767	chr1	23858001	23858002	rs2742976	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	1p36.12		rs2742976-G	NR	3E-6		0.769		Illumina [7574753] (imputed)	N
767	chr1	23861270	23861271	rs34000926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.12	E2F2	rs34000926-C	0.32919	7E-10		0.014737011	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
767	chr1	23861270	23861271	rs34000926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.12	NR	rs34000926-C	0.3272	4E-18		0.018202	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
767	chr1	23906265	23906266	rs4649098	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			MDS2	rs4649098-C	0.4409	4E-12		0.057829	[0.042-0.074] unit decrease	Affymetrix [8165723] (imputed)	N
767	chr1	23943734	23943735	rs34676223	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	1p36.11	MDS2	rs34676223-C	0.71	5E-13		1.19	[1.14-1.25]	Affymetrix, Illumina [> 10000000] (imputed)	N
767	chr1	23959318	23959319	rs61777307	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	1p36.11		rs61777307-?	NR	4E-7		0.042	[0.026-0.058] unit increase	Affymetrix [9906178] (imputed)	N
767	chr1	23959318	23959319	rs61777307	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	1p36.11		rs61777307-?	NR	4E-9		0.042	[0.028-0.056] unit decrease	Affymetrix [9906178] (imputed)	N
768	chr1	24058448	24058449	rs2492599	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.11	NR	rs2492599-?		8E-6				Illumina [4322238] (imputed)	N
768	chr1	24062986	24062987	rs10917420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.11		rs10917420-?	NR	7E-8				NR [~ 8900000] (imputed)	N
768	chr1	24083648	24083649	rs2076346	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p36.11	TCEB3	rs2076346-?	NR	1E-11	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
768	chr1	24102079	24102080	rs11591202	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	1p36.11	ELOA-AS1	rs11591202-?	0.22	5E-6	(women, model 3)	0.16	NR unit decrease	Illumina [628376]	N
768	chr1	24109897	24109897	rs397826789	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p36.11	PITHD1	rs397826789-CAT	0.5769	1E-14		0.02780472	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24153230	24153231	rs6424115	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p36.11	HMGCL	rs6424115-G	0.4232	8E-12		0.02446462	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24165641	24165643	rs773011284	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p36.11	HMGCL	rs773011284-A	0.4242	3E-11		0.02415589	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24165641	24165643	rs773011284	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p36.11	HMGCL	rs773011284-A	0.4242	1E-12		0.0257388	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24166535	24166536	rs12121387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.11	HMGCL	rs12121387-G	0.430811	2E-10		0.014132613	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr1	24167753	24167754	rs149320025	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	1p36.11	FUCA1	rs149320025-G	0.466	4E-7		0.088	[0.055-0.121] unit decrease	Affymetrix [~ 10446505] (imputed)	N
769	chr1	24176806	24176807	rs61665871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.11	FUCA1	rs61665871-C	0.430345	8E-25		0.023149867	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24176806	24176807	rs61665871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	FUCA1	rs61665871-C	0.430336	4E-21		0.021214021	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24176806	24176807	rs61665871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.11	FUCA1	rs61665871-C	0.430361	3E-32		0.026545325	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24176806	24176807	rs61665871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.11	FUCA1	rs61665871-C	0.430363	3E-27		0.0242715	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24179650	24179651	rs6679838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.11	FUCA1	rs6679838-A	0.562205	1E-21		0.021545397	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr1	24194013	24194014	rs3003333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.11	FUCA1	rs3003333-T	0.435168	3E-11		0.014735338	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24194013	24194014	rs3003333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.11		rs3003333-?	NR	2E-11				NR [~ 8900000] (imputed)	N
769	chr1	24196682	24196683	rs4285654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4285654-T	0.580444	2E-28				Affymetrix, Illumina [19872809] (imputed)	N
769	chr1	24199289	24199290	rs2502995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.11	NR	rs2502995-C	0.57046	1E-27		0.021853	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
769	chr1	24199362	24199363	rs2502994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.11	CNR2	rs2502994-C	0.569465	5E-20		0.020403713	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24199362	24199363	rs2502994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.11		rs2502994-?	NR	5E-14				NR [~ 8900000] (imputed)	N
769	chr1	24199362	24199363	rs2502994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.11		rs2502994-?	NR	1E-21				NR [~ 8900000] (imputed)	N
769	chr1	24199363	24199364	rs2501426	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p36.11	CNR2	rs2501426-A	0.5689	2E-11		0.02407	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24199868	24199869	rs3003334	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p36.11	CNR2	rs3003334-A	0.5703	3E-11		0.02384119	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24199868	24199869	rs3003334	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p36.11	CNR2	rs3003334-A	0.5704	1E-9		0.02187639	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr1	24200902	24200903	rs2229586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.11	CNR2	rs2229586-C	0.569603	3E-9		0.013631	[0.0096-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr1	24200902	24200903	rs2229586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.11	CNR2	rs2229586-C	0.569655	4E-21		0.021073094	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
769	chr1	24229412	24229413	rs61778217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs61778217-A	0.164761	6E-16				Affymetrix, Illumina [23472807] (imputed)	N
769	chr1	24235931	24235932	rs61778219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.11	CNR2	rs61778219-T	0.140067	1E-13		0.023657639	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
770	chr1	24251650	24251651	rs35675064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.11	CNR2	rs35675064-T	0.302845	7E-9		0.0144183785	[0.0095-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr1	24256311	24256312	rs75459873	31553412	Legge SE	2019-09-25	JAMA Psychiatry	Association of Genetic Liability to Psychotic Experiences With Neuropsychotic Disorders and Traits.	Psychotic experience (distressing)	2,143 European ancestry cases, 121,379 European ancestry controls	NA	1p36.11	CNR2	rs75459873-?	NR	4E-8		1.5151515	[1.28-1.79]	Affymetrix [> 7500000] (imputed)	N
770	chr1	24294586	24294587	rs35233638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.11		rs35233638-?	NR	3E-17				NR [~ 8900000] (imputed)	N
770	chr1	24300848	24300849	rs6667686	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	SRSF10, PNRC2	rs6667686-G	0.272	2E-6	(Calorimeter activity )	0.04	[NR] counts/d increase	Illumina [899892]	N
770	chr1	24321934	24321935	rs2506089	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p36.11	SRSF10, MYOM3	rs2506089-T	0.5682	3E-8		1.0199974		Affymetrix [11880941] (imputed)	N
770	chr1	24323950	24323951	rs9424354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.11		rs9424354-T	0.580526	1E-17		0.022731613	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
770	chr1	24364530	24364531	rs6689056	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	1p36.11	MYOM3	rs6689056-G	0.67	5E-9	(model 3)	1.04		Affymetrix [11800000] (imputed)	N
770	chr1	24371803	24371803	rs748026492	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p36.11	NR	rs748026492-AT	0.501618	5E-9		0.0418491	[0.028-0.056] unit increase	Affymetrix [17914406] (imputed)	N
771	chr1	24431955	24431956	rs3934861	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	1p36.11	MYOM3	rs3934861-?	NR	4E-6		1.25	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
771	chr1	24467255	24467256	rs12047417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p36.11		rs12047417-A	NR	4E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
771	chr1	24470901	24470902	rs10794644	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.11	NR	rs10794644-G	0.315073	2E-8		0.012233	[0.0079-0.0165] unit increase	NR [NR]	N
771	chr1	24495788	24495788	rs1411798834	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p36.11	NR	rs1411798834-T	0.01045	2E-8	(PBDC1)	0.0322	NR unit increase	Illumina [1671387] (imputed)	N
771	chr1	24497822	24497823	rs6698365	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	1p36.11	IL28RA	rs6698365-?		1E-6				NR [~ 3000000] (imputed)	N
771	chr1	24506048	24506049	rs3893319	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	1p36.11	IL28RA	rs3893319-?		1E-6				NR [~ 3000000] (imputed)	N
771	chr1	24509434	24509435	rs4649201	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	1p36.11	NR	rs4649201-G		3E-11		1.11		NR [8016731] (imputed)	N
772	chr1	24513612	24513613	rs78312791	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs78312791-C	NR	2E-13		1.12	NR	NR [8016731] (imputed)	N
772	chr1	24518205	24518206	rs10794648	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1p36.11	IL28RA	rs10794648-C	0.747	1E-6		1.2	[1.11-1.29]	Illumina [up to 4778154] (imputed)	N
772	chr1	24518205	24518206	rs10794648	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p36.11	IFNLR1	rs10794648-?	NR	2E-9	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
772	chr1	24518642	24518643	rs7552167	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.11	IFNLR1	rs7552167-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
772	chr1	24518642	24518643	rs7552167	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	1p36.11	IFNLR1	rs7552167-G	NR	3E-11		1.26	NR	Illumina [up to 11532644] (imputed)	N
772	chr1	24518642	24518643	rs7552167	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	1p36.11	IL28R	rs7552167-G	0.858	9E-12		1.21		Illumina [111236] (imputed)	N
772	chr1	24519919	24519920	rs4649203	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1p36.11	IL28RA	rs4649203-A	0.73	7E-8		1.13	[1.05-1.22]	Illumina [535475]	N
772	chr1	24526134	24526135	rs12046369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.11	IFNLR1	rs12046369-G	0.85296875	3E-12	(IFNLR1, 7192_37_3)	0.24360542	[0.18-0.31] unit increase	Illumina [> 1000000] (imputed)	N
772	chr1	24535437	24535438	rs10794650	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	1p36.11	NR	rs10794650-?	NR	3E-6		0.0306	[0.018-0.044] unit increase	Illumina [at least 560000] (imputed)	N
772	chr1	24575740	24575741	rs141835214	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1p36.11	NR	rs141835214-?	NR	3E-6		0.1647	[0.096-0.234] unit increase	Illumina [~ 7800000] (imputed)	N
772	chr1	24584489	24584490	rs6670533	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	1p36.11	GRHL3	rs6670533-A	0.0829	6E-6		0.004677	[0.0027-0.0067] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
772	chr1	24626173	24626174	rs10794657	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	1p36.11	NR	rs10794657-G	NR	2E-7		0.029	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
773	chr1	24669456	24669457	rs41268753	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	1p36.11	GRHL3	rs41268753-?	NR	8E-8		2.4	[1.15-5.02] (GENEVA cohort)	Illumina [6090031] (imputed)	N
773	chr1	24669456	24669457	rs41268753	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	GRHL3	rs41268753-T	NR	7E-8		4.5	[0.98-20.14]	Illumina [34985077] (imputed)	N
773	chr1	24669456	24669457	rs41268753	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	GRHL3	rs41268753-T	NR	7E-8		4.45	[2.59-7.66]	Illumina [34985077] (imputed)	N
773	chr1	24669456	24669457	rs41268753	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	GRHL3	rs41268753-T	NR	1E-7	(EA)	5.09	[2.79-9.29]	Illumina [34985077] (imputed)	N
773	chr1	24669456	24669457	rs41268753	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	GRHL3	rs41268753-T	NR	4E-9	(EA)	8.3	[1.17-59.15]	Illumina [34985077] (imputed)	N
773	chr1	24669456	24669457	rs41268753	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	GRHL3	rs41268753-T	NR	3E-8		6.344	[3.306-12.17]	Illumina [34985077] (imputed)	N
773	chr1	24673865	24673866	rs6691722	26644207	Clarelli F	2015-12-08	Pharmacogenomics J	Pharmacogenetic study of long-term response to interferon-? treatment in multiple sclerosis.	Response to interferon beta in multiple sclerosis	166 European ancestry responder cases, 171 European ancestry non-responder cases	NA	1p36.11	GRHL3	rs6691722-?	0.5191	6E-6		2.37	[NR]	Illumina [1387466] (imputed)	N
774	chr1	24787946	24787947	rs195720	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	1p36.11	NIPAL3	rs195720-A	0.38939	2E-12				Affymetrix, Illumina [NR] (imputed)	N
774	chr1	24787946	24787947	rs195720	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1p36.11	NIPAL3	rs195720-?	NR	8E-6				Affymetrix, Illumina [NR] (imputed)	N
774	chr1	24787946	24787947	rs195720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.11		rs195720-?	NR	9E-12				NR [~ 8900000] (imputed)	N
774	chr1	24816852	24816853	rs112392969	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	1p36.11	GRHL3	rs112392969-?	NR	3E-6	(EA)	3.15	[2.02-4.91]	Illumina [6090031] (imputed)	N
774	chr1	24877457	24877458	rs12065278	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	NR	rs12065278-G	NR	6E-6	(EA)	2.427	[1.655-3.558]	Illumina [34985077] (imputed)	N
774	chr1	24877457	24877458	rs12065278	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	1p36.11	NR	rs12065278-G	NR	6E-6		2.43	[1.66-3.56]	Illumina [34985077] (imputed)	N
774	chr1	24899529	24899530	rs4648996	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	1p36.11	NCMAP	rs4648996-C	NR	1E-5			[NR]	NR [NR] (imputed)	N
775	chr1	24967536	24967537	rs143916866	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	GRHL3, NCMAP, NIPAL3, RCAN3, STPG1	rs143916866-T	NR	4E-9		0.15486	NR unit decrease	NR [NR] (imputed)	N
775	chr1	25015637	25015638	rs7511698	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p36.11	SRRM1	rs7511698-C	0.693718	3E-8		0.00821032	[0.0053-0.0111] unit increase	Affymetrix [12370749]	N
775	chr1	25022313	25022314	rs72654647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.11		rs72654647-A	0.246726	2E-12		0.018085852	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
775	chr1	25022313	25022314	rs72654647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.11		rs72654647-A	0.246719	2E-10		0.01638399	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
775	chr1	25022313	25022314	rs72654647	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p36.11	SRRM1	rs72654647-G	0.752205	3E-10		0.0138902	[0.0096-0.0182] unit increase	Affymetrix [NR] (imputed)	N
775	chr1	25022313	25022314	rs72654647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.11		rs72654647-?	NR	2E-10				NR [~ 8900000] (imputed)	N
775	chr1	25022313	25022314	rs72654647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.11		rs72654647-?	NR	2E-15				NR [~ 8900000] (imputed)	N
775	chr1	25023387	25023390	rs10595670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.11		rs10595670-A	0.24565	1E-14		0.019849276	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
775	chr1	25023387	25023387	rs772164657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.11	NR	rs772164657-D	0.245996	1E-17		0.020019	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
775	chr1	25023629	25023630	rs4366267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11		rs4366267-G	0.246948	3E-32		0.03091748	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
775	chr1	25023629	25023630	rs4366267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11		rs4366267-G	0.246967	6E-16		0.021107316	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
775	chr1	25030469	25030470	rs6686889	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p36.11	SRRM1	rs6686889-C	0.750115	4E-12		0.0156868	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
775	chr1	25030469	25030470	rs6686889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.11		rs6686889-?	NR	2E-8				NR [~ 8900000] (imputed)	N
775	chr1	25030469	25030470	rs6686889	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p36.11	chr1mb25	rs6686889-T	0.25	4E-9		0.185	[0.13-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
775	chr1	25032167	25032168	rs66530629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.11		rs66530629-A	0.250942	9E-73		0.04634096	[0.041-0.051] unit increase	Affymetrix [93095623] (imputed)	N
775	chr1	25032167	25032168	rs66530629	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.11	intergenic	rs66530629-A	0.2497	2E-13		0.03107871	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
776	chr1	25038614	25038614	rs567474855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.11		rs567474855-CT	0.174415	9E-10		0.018472424	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
776	chr1	25044110	25044111	rs4601530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4601530-T	0.301799	4E-15				Affymetrix, Illumina [24653286] (imputed)	N
776	chr1	25044110	25044111	rs4601530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.11	NR	rs4601530-T	0.256174	6E-17		0.017885	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
776	chr1	25044110	25044111	rs4601530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4601530-T	0.300396	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
776	chr1	25044110	25044111	rs4601530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.11	NR	rs4601530-T	0.256189	9E-13		0.015311	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
776	chr1	25044110	25044111	rs4601530	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.11	CLIC4	rs4601530-T	0.26	2E-12		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
776	chr1	25049679	25049680	rs4543739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.11		rs4543739-C	NR	1E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
776	chr1	25049679	25049680	rs4543739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p36.11		rs4543739-C	NR	4E-10		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
776	chr1	25049679	25049680	rs4543739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4543739-C	0.305234	6E-15				Affymetrix, Illumina [24332387] (imputed)	N
776	chr1	25069361	25069362	rs117559502	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	1p36.11	SRRM1, CLIC4	rs117559502-?		1E-6				Affymetrix [394222]	N
776	chr1	25069634	25069635	rs115251423	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs115251423-A	0.03326	1E-12		0.545	[0.39-0.7] unit increase	Illumina [18030777] (imputed)	N
776	chr1	25076058	25076059	rs183053322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs183053322-T	0.03546	4E-9		0.3926	[0.26-0.52] unit decrease	Illumina [18427377] (imputed)	N
776	chr1	25076058	25076059	rs183053322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs183053322-T	0.0353	3E-10		0.408	[0.28-0.53] unit decrease	Illumina [18430820] (imputed)	N
776	chr1	25076058	25076059	rs183053322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs183053322-T	0.0353	3E-10		0.4163	[0.29-0.55] unit decrease	Illumina [18430820] (imputed)	N
776	chr1	25095392	25095394	rs760192241	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.11	CLIC4	rs760192241-CA	0.4533	2E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
777	chr1	25171672	25171673	rs12135380	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.11	CLIC4	rs12135380-A	0.616231	1E-13		0.0140444	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
777	chr1	25171672	25171673	rs12135380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.11		rs12135380-?	NR	4E-15				NR [~ 8900000] (imputed)	N
777	chr1	25171672	25171673	rs12135380	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.11		rs12135380-?	NR	1E-14		0.0167969	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
777	chr1	25184033	25184034	rs577535705	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs577535705-T	0.0288	1E-8		0.4301	[0.28-0.58] unit increase	Illumina [18430820] (imputed)	N
777	chr1	25188063	25188064	rs6681012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.11	NR	rs6681012-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
777	chr1	25193154	25193155	rs3131513	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NA	1p36.11	NR	rs3131513-G	0.401	2E-6		0.353	[NR] unit decrease	Illumina [527829]	N
777	chr1	25197154	25197155	rs4648881	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	1p36.11	RUNX3	rs4648881-G	0.49	5E-7	(additive model)	1.16	[1.10-1.23]	Illumina [123003]	N
777	chr1	25222944	25222945	rs9438874	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs9438874-A	0.0913543	8E-19		0.0469853	[0.037-0.057] unit increase	NR [19129689] (imputed)	N
777	chr1	25224320	25224321	rs9438859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p36.11	NR	rs9438859-C	NR	2E-10		0.0178	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25224411	25224412	rs7522098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs7522098-G	NR	1E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25231561	25231562	rs9438875	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p36.11	RUNX3	rs9438875-T	NR	2E-6		0.0160023	[0.0094-0.0226] unit increase	Illumina [13520550] (imputed)	N
777	chr1	25234155	25234156	rs74060469	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.11	NR	rs74060469-C	0.96116	5E-12		1.1150758	[1.08-1.15]	Affymetrix [15688218] (imputed)	N
777	chr1	25241055	25241056	rs2282718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.11	NR	rs2282718-A	0.372092	3E-18		0.017559	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
777	chr1	25241055	25241056	rs2282718	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1p36.11	RUNX3	rs2282718-G	0.605	9E-9		0.0215625	[0.014-0.029] unit decrease	Illumina [13520550] (imputed)	N
777	chr1	25241115	25241116	rs9438876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p36.11		rs9438876-?	NR	2E-14				NR [~ 8900000] (imputed)	N
777	chr1	25241115	25241116	rs9438876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs9438876-?	NR	1E-8				NR [~ 8900000] (imputed)	N
777	chr1	25250829	25250830	rs10794666	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p36.11		rs10794666-C	0.427	5E-9				Affymetrix [10369434] (imputed)	N
777	chr1	25250829	25250830	rs10794666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.11		rs10794666-?	NR	2E-18				NR [~ 8900000] (imputed)	N
777	chr1	25250916	25250916	rs200872239	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1p36.11	RUNX3	rs200872239-?	0.313	3E-7		0.0324197	[0.02-0.045] unit increase	Illumina [13520550] (imputed)	N
777	chr1	25250919	25250919	rs34349689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.11	NR	rs34349689-I	0.568585	1E-14		0.01591	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
777	chr1	25250919	25250919	rs34349689	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p36.11	RUNX3	rs34349689-GT	0.561034	6E-12		1.0426724	[1.03035224576096-1.05513977607479]	NR [9572556] (imputed)	N
777	chr1	25251423	25251424	rs742230	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1p36.11	RUNX3	rs742230-?	NR	1E-8		1.0416667		NR [74888535] (imputed)	N
777	chr1	25251423	25251424	rs742230	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1p36.11	RUNX3	rs742230-?	NR	1E-8		1.0638298	[1.04-1.09]	Affymetrix [74888535] (imputed)	N
777	chr1	25251922	25251923	rs760805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.11	RUNX3	rs760805-T	0.572699	3E-12		0.015600162	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
777	chr1	25251922	25251923	rs760805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.11	RUNX3	rs760805-T	0.5727	7E-16		0.01803149	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
777	chr1	25251922	25251923	rs760805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p36.11		rs760805-?	NR	6E-14				NR [~ 8900000] (imputed)	N
777	chr1	25251922	25251923	rs760805	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1p36.11	RUNX3	rs760805-T	0.58	6E-13		1.038	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
777	chr1	25254316	25254317	rs7517302	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1p36.11	MIR6731, RUNX3	rs7517302-T	0.576714	4E-8		1.0350137	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
777	chr1	25259883	25259884	rs3845302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.11		rs3845302-G	NR	9E-13		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
777	chr1	25259883	25259884	rs3845302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.11	RUNX3	rs3845302-G	0.579822	1E-15		0.017935613	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
777	chr1	25259883	25259884	rs3845302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs3845302-G	0.577129	7E-19				Affymetrix, Illumina [23472807] (imputed)	N
777	chr1	25261202	25261203	rs4648883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1p36.11	NR	rs4648883-C	0.5803	2E-13		1.0454783	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
777	chr1	25261202	25261203	rs4648883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1p36.11	NR	rs4648883-C	0.5803	4E-16		1.046244	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
777	chr1	25262021	25262022	rs1005734	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	RUNX3	rs1005734-A	NR	2E-11		0.0421434	NR unit decrease	NR [NR] (imputed)	N
777	chr1	25263996	25263997	rs1293202	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.11	RUNX3	rs1293202-G	0.87	3E-12				NR [> 9500000] (imputed)	N
777	chr1	25266475	25266476	rs11249205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs11249205-T	NR	1E-15		0.0509	[0.038-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25267921	25267922	rs4649038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs4649038-C	NR	2E-14		0.0193	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25267921	25267922	rs4649038	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs4649038-C	NR	5E-30		0.0286	[0.024-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25273022	25273023	rs79598985	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	CLIC4, NCMAP, RCAN3, RUNX3, SRRM1	rs79598985-A	NR	1E-10		0.0794293	NR unit increase	NR [NR] (imputed)	N
777	chr1	25273199	25273200	rs7551188	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	1p36.11	RUNX3	rs7551188-T	NR	9E-6		1.18	[1.10-1.28]	Illumina [4929034] (imputed)	N
777	chr1	25277975	25277976	rs189131320	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	1p36.11	RUNX3	rs189131320-G	0.011	8E-7	(Tetracyclines [J01AA])	4.72		Illumina [16500000] (imputed)	N
777	chr1	25286150	25286151	rs4648888	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1p36.11	RUNX3	rs4648888-?	NR	2E-12		0.03308	[0.024-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
777	chr1	25286150	25286151	rs4648888	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1p36.11	RUNX3	rs4648888-?	NR	1E-12		0.03356	[0.024-0.043] unit increase novel	Illumina [6108953] (imputed)	N
777	chr1	25289733	25289734	rs72657048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p36.11		rs72657048-G	NR	9E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
777	chr1	25289733	25289734	rs72657048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p36.11		rs72657048-G	NR	1E-8		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
777	chr1	25289733	25289734	rs72657048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.11		rs72657048-G	NR	4E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
777	chr1	25289733	25289734	rs72657048	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	1p36.11	RUNX3	rs72657048-G	NR	4E-7		1.13	[1.08-1.18]	Illumina [7461261] (imputed)	N
777	chr1	25289733	25289734	rs72657048	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1p36.11	RUNX3	rs72657048-G	0.502	4E-6		1.0869565		Illumina [139553]	N
777	chr1	25291009	25291010	rs6672420	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1p36.11		rs6672420-T	0.4793	5E-12		1.08		Affymetrix, Illumina [9397031] (imputed)	N
777	chr1	25291009	25291010	rs6672420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	1p36.11		rs6672420-T	NR	7E-10		0.1237	[0.084-0.163] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
777	chr1	25291009	25291010	rs6672420	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	1p36.11	NR	rs6672420-T		3E-12		1.07		NR [8016731] (imputed)	N
777	chr1	25291009	25291010	rs6672420	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p36.11	RUNX3	rs6672420-A	NR	1E-9		1.0633773	NR	Affymetrix, Illumina [8278136] (imputed)	N
777	chr1	25291009	25291010	rs6672420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.11		rs6672420-?	NR	2E-8				NR [~ 8900000] (imputed)	N
777	chr1	25291696	25291697	rs188468174	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1p36.11		rs188468174-C	0.985159	4E-10		0.107527	[0.074-0.141] unit increase	NR [11722792] (imputed)	N
777	chr1	25291696	25291697	rs188468174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.11	RUNX3	rs188468174-T	0.0143140000000001	4E-12		0.06596895	[0.047-0.085] unit increase	Affymetrix [93095623] (imputed)	N
777	chr1	25291696	25291697	rs188468174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	RUNX3	rs188468174-T	0.0143180000000001	3E-13		0.06925445	[0.051-0.088] unit increase	Affymetrix [93095623] (imputed)	N
777	chr1	25291696	25291697	rs188468174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p36.11	NR	rs188468174-C	0.985766	4E-10		0.055334	[0.038-0.073] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
777	chr1	25291696	25291697	rs188468174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.11		rs188468174-?	NR	2E-42				NR [~ 8900000] (imputed)	N
777	chr1	25291696	25291697	rs188468174	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs188468174-T	0.0140221	6E-93		0.266837	[0.24-0.29] unit decrease	NR [19129689] (imputed)	N
777	chr1	25291696	25291697	rs188468174	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	1p36.11	RUNX3	rs188468174-T	0.0084	8E-55		0.9	NR SD units decrease	Illumina [21568490] (imputed)	N
777	chr1	25291696	25291697	rs188468174	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	CLIC4, RUNX3	rs188468174-T	NR	5E-21		0.238642	NR unit decrease	NR [NR] (imputed)	N
777	chr1	25293083	25293084	rs7536201	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	1p36.11	RUNX3	rs7536201-C	NR	2E-8		1.133	NR	Illumina [up to 11532644] (imputed)	N
777	chr1	25293083	25293084	rs7536201	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	1p36.11	RUNX3	rs7536201-C	0.494	2E-12		1.13		Illumina [111236] (imputed)	N
777	chr1	25293355	25293356	rs4265380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs4265380-T	NR	8E-42		0.0339	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25293355	25293356	rs4265380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs4265380-T	NR	1E-66		0.0431	[0.038-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25294873	25294874	rs114808189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p36.11	NR	rs114808189-A	NR	7E-14		0.0436	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr1	25296742	25296743	rs10751776	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1p36.11	RUNX3	rs10751776-C	0.509915	3E-8		0.07814535	[0.051-0.106] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
777	chr1	25296742	25296743	rs10751776	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p36.11	NR	rs10751776-C	0.54112898484173	7E-6	(IGP69)	0.1484	[0.084-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
778	chr1	25297183	25297184	rs11249215	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs11249215-A	NR	7E-14		1.08	NR	NR [8016731] (imputed)	N
778	chr1	25297183	25297184	rs11249215	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls		NR	rs11249215-?	NR	9E-6		4.44	[NR] z-score increase	Illumina [1387382] (imputed)	N
778	chr1	25297183	25297184	rs11249215	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls		RUNX3	rs11249215-A	0.47	9E-11				Illumina [2223620] (imputed)	N
778	chr1	25298283	25298284	rs10903120	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs10903120-A	0.0293	7E-11	(IgG2_G1Fn)	0.8725	[0.61-1.13] unit decrease	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298283	25298284	rs10903120	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs10903120-A	0.0293	3E-9	(IgG2_G0FNn)	0.8392	[0.56-1.12] unit increase	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298283	25298284	rs10903120	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs10903120-A	0.0293	2E-9	(IgG2_G0FN)	0.8383	[0.56-1.11] unit increase	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298840	25298841	rs16830188	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs16830188-T	0.0212	4E-10	(IgG2_G1F)	0.9129	[0.63-1.2] unit decrease	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298840	25298841	rs16830188	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs16830188-T	0.0212	3E-7	(IgG2 G1n)	0.7958	[0.49-1.1] unit decrease	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298840	25298841	rs16830188	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs16830188-T	0.0212	2E-7	(IgG4_G2F)	0.9452	[0.59-1.3] unit decrease	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25298840	25298841	rs16830188	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	1p36.11	NR	rs16830188-T	0.0212	1E-6	(IgG2 G0n)	0.777	[0.46-1.09] unit increase	Affymetrix [up to 18185628] (imputed)	N
778	chr1	25303575	25303576	rs10903122	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p36.11	RUNX3	rs10903122-?	0.52	2E-10		1.12	[1.09-1.18]	Illumina [292387]	N
778	chr1	25304551	25304552	rs10794667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs10794667-T	0.515715	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
778	chr1	25305113	25305114	rs6600247	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p36.11	RP11-84D1.2	rs6600247-?	NR	9E-29	(subset analysis)			Illumina [130052]	N
778	chr1	25305113	25305114	rs6600247	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1p36.11	RUNX3	rs6600247-C	0.501	3E-15		1.15		Illumina [128935]	N
778	chr1	25305113	25305114	rs6600247	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1p36.11	RUNX3	rs6600247-C	0.501	1E-14	(EA)	1.16		Illumina [128935]	N
778	chr1	25305171	25305172	rs6600250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p36.11		rs6600250-T	NR	2E-45		0.0299	[0.026-0.034] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
778	chr1	25318224	25318225	rs186127900	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs186127900-T	NR	2E-11		0.180334	NR unit decrease	NR [NR] (imputed)	N
778	chr1	25321753	25321754	rs4649041	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs4649041-G	NR	9E-12		0.0559079	NR unit decrease	NR [NR] (imputed)	N
778	chr1	25328008	25328009	rs6665019	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	1p36.11	intergenic	rs6665019-A	0.1211	5E-6	(Complete)	0.5008	[0.29-0.72] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
778	chr1	25333133	25333134	rs115176171	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs115176171-G	NR	4E-11		0.073956	NR unit increase	NR [NR] (imputed)	N
778	chr1	25342255	25342256	rs4649043	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	1p36.11	NR	rs4649043-?		3E-6		2.173913	[NR]	Illumina [NR] (imputed)	N
778	chr1	25343418	25343419	rs12070150	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs12070150-T	0.0847458	1E-33		0.0671208	[0.056-0.078] unit decrease	NR [19129689] (imputed)	N
778	chr1	25347576	25347577	rs11249243	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p36.11	SYF2, RUNX3	rs11249243-C	NR	5E-17		0.209657	[0.16-0.26] unit decrease	Affymetrix [27512692] (imputed)	N
778	chr1	25348950	25348950	rs71014329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p36.11		rs71014329-GT	NR	1E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
778	chr1	25351580	25351581	rs4320727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p36.11		rs4320727-A	NR	3E-8		0.0493	[0.032-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
778	chr1	25351580	25351581	rs4320727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.11		rs4320727-A	NR	1E-8		0.0286	[0.019-0.038] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
778	chr1	25351580	25351581	rs4320727	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p36.11	NR	rs4320727-A	0.62	3E-10		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
778	chr1	25351580	25351581	rs4320727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.11		rs4320727-?	NR	3E-13				NR [~ 8900000] (imputed)	N
778	chr1	25351580	25351581	rs4320727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p36.11		rs4320727-?	NR	4E-10				NR [~ 8900000] (imputed)	N
778	chr1	25361241	25361242	rs61776403	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs61776403-A	NR	6E-18		0.0576954	NR unit decrease	NR [NR] (imputed)	N
778	chr1	25363337	25363338	rs10903128	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs10903128-G	NR	2E-9		0.0413705	NR unit increase	NR [NR] (imputed)	N
778	chr1	25380138	25380139	rs60473185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs60473185-?	NR	2E-21				NR [~ 8900000] (imputed)	N
778	chr1	25395132	25395133	rs448385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.11		rs448385-?	NR	1E-12				NR [~ 8900000] (imputed)	N
778	chr1	25396832	25396833	rs365865	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs365865-C	0.401807	1E-18		0.0278757	[0.022-0.034] unit decrease	NR [19129689] (imputed)	N
778	chr1	25397197	25397198	rs79472072	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs79472072-A	NR	5E-10		0.16565	NR unit decrease	NR [NR] (imputed)	N
778	chr1	25399668	25399669	rs11586871	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs11586871-T	NR	3E-8		0.0503486	NR unit increase	NR [NR] (imputed)	N
778	chr1	25402623	25402624	rs10903027	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p36.11	NR	rs10903027-C	0.707795287049399	5E-6	(IGP67)	0.1594	[0.091-0.228] unit increase	Illumina [~ 2500000] (imputed)	N
778	chr1	25409255	25409256	rs12077761	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs12077761-G	NR	1E-8		0.0546958	NR unit decrease	NR [NR] (imputed)	N
779	chr1	25457280	25457281	rs75251726	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	1p36.11	MIR4425, SYF2	rs75251726-?	NR	9E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
779	chr1	25463500	25463501	rs12737245	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs12737245-A	0.322849	9E-130		0.087803	[0.081-0.095] unit decrease	NR [19129689] (imputed)	N
779	chr1	25463850	25463851	rs12744222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p36.11		rs12744222-?	NR	1E-60				NR [~ 8900000] (imputed)	N
779	chr1	25466628	25466629	rs9803723	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p36.11	SYF2, RUNX3	rs9803723-C	NR	2E-19		0.133322	[0.1-0.16] unit decrease	Affymetrix [27512692] (imputed)	N
779	chr1	25467879	25467880	rs12745121	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs12745121-A	NR	6E-26		0.0704344	NR unit decrease	NR [NR] (imputed)	N
779	chr1	25469912	25469913	rs2064251	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p36.11	SYF2, RUNX3	rs2064251-G	NR	1E-20		0.148601	[0.12-0.18] unit increase	Affymetrix [27512692] (imputed)	N
779	chr1	25472464	25472465	rs6600257	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs6600257-A	NR	6E-15		0.0585318	NR unit increase	NR [NR] (imputed)	N
779	chr1	25483943	25483944	rs181927184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p36.11	Intergenic	rs181927184-A	0.998	7E-7	(AA)	0.304	unit increase	Illumina [NR] (imputed)	N
779	chr1	25488412	25488413	rs6681610	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs6681610-A	0.291456	1E-76		0.0687112	[0.061-0.076] unit decrease	NR [19129689] (imputed)	N
779	chr1	25497791	25497792	rs10158481	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	1p36.11	SYF2	rs10158481-T	0.72	3E-6	(women)	0.113	[0.066-0.16] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
779	chr1	25498174	25498175	rs7534070	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1p36.11		rs7534070-T	0.35	9E-16		0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
779	chr1	25498174	25498175	rs7534070	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p36.11	NR	rs7534070-T	NR	1E-14		0.05	NR unit decrease	NR [NR] (imputed)	N
779	chr1	25498174	25498175	rs7534070	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	1p36.11	RUNX3, SYF2	rs7534070-?	NR	5E-11		1.201923	[1.14-1.27]	Illumina [13436641] (imputed)	N
779	chr1	25529037	25529038	rs2375278	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1p36.11	SYF2	rs2375278-A	0.173	1E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
779	chr1	25529037	25529038	rs2375278	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	1p36.11	SYF2	rs2375278-A	0.1888	2E-7		0.0113	[0.007-0.0156] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
780	chr1	25561666	25561667	rs55794721	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.11		rs55794721-G	0.594	1E-30				Affymetrix [10369434] (imputed)	N
780	chr1	25561666	25561667	rs55794721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs55794721-A	0.385199	2E-82				Affymetrix, Illumina [24246363] (imputed)	N
780	chr1	25561666	25561667	rs55794721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p36.11	NR	rs55794721-A	0.3972	1E-85		0.037049	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
780	chr1	25561666	25561667	rs55794721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs55794721-A	0.394589	8E-30				Affymetrix, Illumina [20825802] (imputed)	N
780	chr1	25561666	25561667	rs55794721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.11	NR	rs55794721-A	0.406468	9E-30		0.022288	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
780	chr1	25561666	25561667	rs55794721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.11	SYF2	rs55794721-A	0.4119	7E-37		0.04743355	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
780	chr1	25561666	25561667	rs55794721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.11	SYF2	rs55794721-A	0.4127	5E-16		0.02927344	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
780	chr1	25570080	25570081	rs1043879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs1043879-C	NR	8E-17		0.0231	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25570080	25570081	rs1043879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.11	NR	rs1043879-C	NR	7E-16		0.0224	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25570080	25570081	rs1043879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs1043879-C	NR	8E-17		0.0231	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25570080	25570081	rs1043879	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1p36.11	C1orf63	rs1043879-C	0.2482	3E-13		0.02916971	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
780	chr1	25570080	25570081	rs1043879	21700265	Kullo IJ	2011-06-22	Am J Hum Genet	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	C1orf63	rs1043879-?	NR	2E-9		0.09	[NR] unit decrease	Illumina [476395]	N
780	chr1	25583609	25583610	rs72660908	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1p36.11		rs72660908-G	0.3618	8E-148		0.481531	[0.45-0.52] unit decrease	Illumina [7506463] (imputed)	N
780	chr1	25583609	25583610	rs72660908	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1p36.11		rs72660908-G	0.3618	8E-134		0.4608	[0.42-0.5] unit decrease	Illumina [7506463] (imputed)	N
780	chr1	25583609	25583610	rs72660908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.11	C1orf63	rs72660908-G	0.4053	4E-15		0.025348805	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25583609	25583610	rs72660908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.11		rs72660908-?	NR	6E-30				NR [~ 8900000] (imputed)	N
780	chr1	25583609	25583610	rs72660908	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.11	NR	rs72660908-G	0.454	5E-159	(Intercellular adhesion molecule 4, ICAM4.6550.4.3)	0.62	[0.58-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	1E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	4E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	1E-11		0.0234	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	3E-26		0.0373	[0.03-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	2E-11		0.025	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs9438901-A	NR	6E-15		0.0269	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr1	25584975	25584976	rs9438901	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.11	C1orf63	rs9438901-A	0.8599	1E-20		0.04734366	[0.037-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
780	chr1	25586491	25586492	rs614385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	C1orf63	rs614385-T	0.171422	6E-11		0.02227058	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.11		rs604183-A	NR	7E-53		0.0358	[0.031-0.04] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
780	chr1	25600746	25600747	rs604183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p36.11		rs604183-A	NR	3E-44		0.0334	[0.029-0.038] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413842	1E-84		0.057684317	[0.052-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413796	1E-32		0.02699633	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413809	6E-27		0.028446522	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413787	7E-94		0.06587745	[0.06-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413737	5E-107		0.052279644	[0.048-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413825	6E-68		0.0386853	[0.035-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25600746	25600747	rs604183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.11	C1orf63, RHD	rs604183-A	0.413853	5E-45		0.026953	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25622243	25622244	rs143670081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.11		rs143670081-?	NR	4E-28				NR [~ 8900000] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464174	1E-8		0.0256176	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464174	3E-8		0.0249355	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464132	2E-8		0.0247791	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464132	3E-9		0.0262998	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464174	4E-9		0.0265969	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464174	5E-8		0.0245171	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
780	chr1	25622290	25622291	rs2986164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs2986164-G	0.464174	5E-8		0.0247173	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
780	chr1	25657076	25657077	rs5773126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p36.11		rs5773126-A	NR	1E-30		0.0305	[0.025-0.036] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
780	chr1	25657076	25657077	rs5773126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.11	C1orf63	rs5773126-A	0.185458	1E-16		0.024881592	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25668325	25668326	rs9645452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP3	5,368 Icelandic ancestry individuals	NA	1p36.11		rs9645452-T	0.4752	6E-12		0.130407	[0.093-0.168] unit decrease	Illumina [7506463] (imputed)	N
780	chr1	25674784	25674785	rs3091242	21700265	Kullo IJ	2011-06-22	Am J Hum Genet	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	TMEM50A	rs3091242-?	NR	2E-13		0.1	[NR] unit decrease	Illumina [476395]	N
780	chr1	25675529	25675530	rs114247628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p36.11		rs114247628-A	NR	6E-17		0.1353	[0.1-0.17] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
780	chr1	25675529	25675530	rs114247628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.11	TMEM50A	rs114247628-A	0.005629	3E-37		0.19474392	[0.16-0.22] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25675529	25675530	rs114247628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	TMEM50A	rs114247628-A	0.005629	7E-37		0.19364712	[0.16-0.22] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25675529	25675530	rs114247628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.11	TMEM50A	rs114247628-A	0.00564600000000004	7E-23		0.201018	[0.17-0.23] unit increase	Affymetrix [93095623] (imputed)	N
780	chr1	25675529	25675530	rs114247628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs114247628-A	0.00602987	1E-40				Affymetrix, Illumina [21126107] (imputed)	N
780	chr1	25675529	25675530	rs114247628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p36.11	NR	rs114247628-A	0.006171	2E-44		0.191675	[0.16-0.22] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
780	chr1	25677604	25677605	rs72660919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	TMEM50A	rs72660919-A	0.134035	5E-42		0.0521489	[0.045-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25677604	25677605	rs72660919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.11	TMEM50A	rs72660919-A	0.134019	8E-20		0.03387181	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr1	25677604	25677605	rs72660919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p36.11	TMEM50A	rs72660919-A	0.13393	1E-24		0.0278164	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25695834	25695835	rs1293259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1p36.11		rs1293259-A	0.1621	4E-62		0.415041	[0.37-0.46] unit increase	Illumina [7506463] (imputed)	N
781	chr1	25695834	25695835	rs1293259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1p36.11		rs1293259-A	0.1621	2E-63		0.418982	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
781	chr1	25695834	25695835	rs1293259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs1293259-A	NR	3E-11		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
781	chr1	25695834	25695835	rs1293259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.11	NR	rs1293259-A	NR	1E-12		0.024	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
781	chr1	25695834	25695835	rs1293259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p36.11	NR	rs1293259-A	NR	1E-25		0.0361	[0.029-0.043] unit increase	Affymetrix [9000000] (imputed)	N
781	chr1	25695834	25695835	rs1293259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	1p36.11	NR	rs1293259-A	NR	2E-10		0.0231	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
781	chr1	25695834	25695835	rs1293259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs1293259-A	NR	7E-16		0.0272	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
781	chr1	25703155	25703156	rs644592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.11	RHCE	rs644592-T	0.150351	3E-33		0.038129624	[0.032-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25703155	25703156	rs644592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	RHCE	rs644592-T	0.15034	6E-36		0.039737374	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25703155	25703156	rs644592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.11	RHCE	rs644592-T	0.150302	9E-18		0.026704641	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25710409	25710410	rs621189	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1p36.11	RHCE	rs621189-T	0.9947	3E-11		0.1829599	[0.13-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	3E-8		0.0222132	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	1E-8		0.0230189	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	4E-8		0.0226504	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	8E-9		0.023626	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	4E-9		0.0234801	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	2E-8		0.0227195	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	2E-8		0.0231466	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	5E-9		0.0240683	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	3E-9		0.0245832	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	3E-8		0.0227873	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	8E-9		0.0230029	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	7E-11		0.0266463	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	4E-8		0.0227603	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	7E-9		0.0231386	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	2E-10		0.0262636	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	4E-8		0.0218899	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713233	25713234	rs1293261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1p36.11		rs1293261-A	0.474824	3E-9		0.0243776	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25713333	25713339	rs35992941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.11	RHCE	rs35992941-A	0.405331	4E-25		0.023165377	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25713338	25713344	rs3079633	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.11	RHCE	rs3079633-A	0.442	5E-12	(Transmembrane protein 2, TMEM2.8992.1.3)	0.17	[0.11-0.23] unit increase	Affymetrix [10572788] (imputed)	N
781	chr1	25713338	25713344	rs3079633	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p36.11	RHCE	rs3079633-A	0.442	2E-160	(Intercellular adhesion molecule 4, ICAM4.6550.4.3)	0.62	[0.58-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
781	chr1	25715884	25715885	rs760938	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.11	RHCE	rs760938-C	0.441174	7E-10		0.0113471	[0.0077-0.015] unit increase	NR [13737936] (imputed)	N
781	chr1	25720087	25720088	rs679429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11	RHCE	rs679429-A	0.612369	2E-11		0.0206062	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25724500	25724501	rs376477778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p36.11	RHCE	rs376477778-G	0.14639	2E-14		0.028207112	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25724500	25724501	rs376477778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	RHCE	rs376477778-G	0.146402	9E-15		0.028651364	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25732086	25732087	rs61777615	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p36.11	RHCE	rs61777615-A	NR	3E-24		0.0399529	[0.032-0.048] unit decrease	Affymetrix [16832071] (imputed)	N
781	chr1	25732086	25732087	rs61777615	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p36.11	RHCE	rs61777615-A	0.4222	6E-34		0.04409033	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25732547	25732548	rs28513325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	RHCE	rs28513325-A	0.962135	4E-23		0.07650593	[0.061-0.092] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25732547	25732548	rs28513325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.11	RHCE	rs28513325-A	0.9621637	5E-11		0.050950553	[0.036-0.066] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25732547	25732548	rs28513325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p36.11	RHCE	rs28513325-A	0.9621451	3E-14		0.051504366	[0.038-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25732547	25732548	rs28513325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p36.11	RHCE	rs28513325-A	0.9621442	5E-15		0.052976456	[0.04-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25732547	25732548	rs28513325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p36.11	RHCE	rs28513325-A	0.9705	2E-12		0.08774246	[0.063-0.112] unit decrease	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25732547	25732548	rs28513325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p36.11	RHCE	rs28513325-A	0.9706	1E-13		0.09227352	[0.068-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25736368	25736369	rs111941366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs111941366-T	0.422178	9E-81				Affymetrix, Illumina [24588908] (imputed)	N
781	chr1	25736368	25736369	rs111941366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p36.11	NR	rs111941366-T	0.441429	1E-84		0.036054	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
781	chr1	25736368	25736369	rs111941366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p36.11	RHCE	rs111941366-T	0.45	4E-13		0.02634887	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25736368	25736369	rs111941366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p36.11	RHCE	rs111941366-T	0.4501	6E-32		0.04322901	[0.036-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
781	chr1	25742693	25742694	rs78207142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	RHCE	rs78207142-T	0.108281	9E-17		0.032565027	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25745644	25745645	rs2982360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	RHCE	rs2982360-T	0.552964	2E-14		0.025852455	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25747229	25747230	rs586178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p36.11	RHCE	rs586178-C	0.549332	3E-102		0.06871988	[0.062-0.075] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25747229	25747230	rs586178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs586178-G	0.460024	5E-136				Affymetrix, Illumina [22063850] (imputed)	N
781	chr1	25747229	25747230	rs586178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p36.11	NR	rs586178-G	0.454351	5E-139		0.047846	[0.044-0.052] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
781	chr1	25747229	25747230	rs586178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p36.11		rs586178-?	NR	3E-123				NR [~ 8900000] (imputed)	N
781	chr1	25747229	25747230	rs586178	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs586178-G	NR	6E-8		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25747229	25747230	rs586178	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs586178-G	0.555	4E-7	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25747229	25747230	rs586178	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs586178-G	NR	9E-8		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25747229	25747230	rs586178	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs586178-G	0.555	2E-6	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25747229	25747230	rs586178	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p36.11	LDLRAP1	rs586178-C	0.5	4E-9		0.037	[0.025-0.049] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
781	chr1	25747229	25747230	rs586178	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1p36.11	LDLRAP1	rs586178-C	0.5	3E-9		0.037	[0.025-0.049] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
781	chr1	25749268	25749269	rs28695210	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p36.11	RHCE	rs28695210-A	0.129	1E-8		0.0481	[0.032-0.065] unit increase	Affymetrix [at least 805769] (imputed)	N
781	chr1	25758133	25758134	rs11249249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.11		rs11249249-?	NR	2E-8				NR [~ 8900000] (imputed)	N
781	chr1	25760919	25760920	rs11802413	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p36.11	LDLRAP1	rs11802413-T	0.537	2E-18	(Trans-ethnic initial)	0.0323	[0.025-0.039] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	TMEM57	rs9438905-G	NR	9E-21				Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	TMEM57	rs9438905-G	NR	8E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	TMEM57	rs9438905-G	NR	9E-20				Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	TMEM57	rs9438905-G	NR	3E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p36.11	TMEM57	rs9438905-G	NR	8E-13		1.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p36.11	TMEM57	rs9438905-G	NR	5E-11	(EA)	1.169	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p36.11	TMEM57	rs9438905-G	NR	3E-9		0.964	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25764176	25764177	rs9438905	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p36.11	TMEM57	rs9438905-G	NR	3E-7	(EA)	1.222	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
781	chr1	25766464	25766465	rs9438909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p36.11		rs9438909-C	NR	3E-28		0.0237	[0.02-0.028] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
781	chr1	25766501	25766501	rs35568851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p36.11	NR	rs35568851-CT	0.553766	2E-10		0.00769678	[0.0053-0.0101] unit increase	Affymetrix [16585854] (imputed)	N
781	chr1	25766501	25766501	rs35568851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p36.11	NR	rs35568851-CT	0.553766	5E-8		0.00779919	[0.005-0.0106] unit increase	Affymetrix [16585866] (imputed)	N
781	chr1	25768936	25768937	rs10903129	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p36.11	NR	rs10903129-?	NR	5E-6		1.60285	[0.91-2.29] unit increase	Illumina [32003504] (imputed)	N
781	chr1	25768936	25768937	rs10903129	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p36.11		rs10903129-A	0.4651	4E-9		0.9072	[0.61-1.21] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
781	chr1	25768936	25768937	rs10903129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs10903129-A	NR	2E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25768936	25768937	rs10903129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs10903129-A	0.459	8E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25768936	25768937	rs10903129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs10903129-A	NR	9E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25768936	25768937	rs10903129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs10903129-A	0.459	8E-8	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25768936	25768937	rs10903129	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p36.11	LDLRAP1	rs10903129-A	0.463	3E-16	(Trans-ethnic initial)	0.029	[0.022-0.036] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
781	chr1	25768936	25768937	rs10903129	21700265	Kullo IJ	2011-06-22	Am J Hum Genet	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1p36.11	TMEM57	rs10903129-?	NR	5E-13		0.1	[NR] unit decrease	Illumina [476395]	N
781	chr1	25768936	25768937	rs10903129	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p36.11	TMEM57	rs10903129-G	0.54	5E-10		0.06	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
781	chr1	25769209	25769209	rs139604259	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p36.11	TMEM57	rs139604259-?	NR	4E-36		0.032	[0.027-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
781	chr1	25769209	25769209	rs139604259	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.11	TMEM57	rs139604259-?	0.4277	6E-12		0.0182	[0.013-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
781	chr1	25771623	25771623	rs771364858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs771364858-TA,rs771364858-TA	0.44995	6E-9		0.0236171	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25771623	25771623	rs771364858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs771364858-TA,rs771364858-TA	0.44995	6E-9		0.0236171	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25773708	25773708	rs34596921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p36.11		rs34596921-TA	NR	1E-13		0.0187	[0.014-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
781	chr1	25775681	25775682	rs12027110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs12027110-A	0.445322	2E-9		0.0249477	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
781	chr1	25775681	25775682	rs12027110	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	1p36.11	NR	rs12027110-A	0.493	2E-16	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
781	chr1	25775732	25775733	rs12027135	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p36.11		rs12027135-A	0.5077	2E-8		0.9191	[0.6-1.24] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
781	chr1	25775732	25775733	rs12027135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12027135-A	NR	9E-10		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25775732	25775733	rs12027135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12027135-A	0.461	7E-9	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25775732	25775733	rs12027135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12027135-A	NR	3E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25775732	25775733	rs12027135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12027135-A	0.461	7E-8	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
781	chr1	25775732	25775733	rs12027135	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	LDLRAP1	rs12027135-A	0.46	2E-14		0.03	[NR] unit decrease	NR [NR] (imputed)	N
781	chr1	25775732	25775733	rs12027135	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	LDLRAP1	rs12027135-A	0.46	5E-12		0.027	[NR] unit decrease	NR [NR] (imputed)	N
781	chr1	25775732	25775733	rs12027135	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p36.11	TMEM57, LDLRAP1	rs12027135-A	0.47	1E-10		1.1	[0.75-1.45] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
781	chr1	25775732	25775733	rs12027135	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p36.11	TMEM57, LDLRAP1	rs12027135-A	0.47	4E-11		1.22	[0.85-1.59] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
781	chr1	25779235	25779236	rs7519530	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	TMEM57	rs7519530-?		5E-9		0.0278	[0.018-0.037] unit increase	Illumina [31500000] (imputed)	N
781	chr1	25780667	25780668	rs34006994	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p36.11	MACO1	rs34006994-?	NR	1E-12		1.019	[0.68-1.36] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
781	chr1	25793662	25793663	rs61775180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p36.11		rs61775180-T	NR	2E-28		0.0226	[0.019-0.027] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
781	chr1	25793662	25793663	rs61775180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p36.11	TMEM57	rs61775180-T	0.419963	1E-55		0.03554708	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
781	chr1	25793662	25793663	rs61775180	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p36.11	TMEM57	rs61775180-C	0.579863	2E-35		0.0262622	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
781	chr1	25793662	25793663	rs61775180	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p36.11	TMEM57	rs61775180-C	0.579884	4E-42		0.0286213	[0.024-0.033] unit increase	Affymetrix [NR] (imputed)	N
781	chr1	25797832	25797833	rs34293609	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.11	TMEM57	rs34293609-?	0.4797	6E-11		0.0174	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
781	chr1	25797832	25797832	rs34002682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.11	NR	rs34002682-CA	0.558866	3E-25		0.00855399	[0.0069-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
781	chr1	25797832	25797832	rs34002682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.11	NR	rs34002682-CA	0.558866	7E-23		0.00892238	[0.0071-0.0108] unit increase	Affymetrix [16582965] (imputed)	N
781	chr1	25800789	25800790	rs35431118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs35431118-?	NR	2E-9				NR [~ 8900000] (imputed)	N
781	chr1	25802055	25802056	rs66844552	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p36.11	NR	rs66844552-A	0.598019	3E-8		0.0174269	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
781	chr1	25816846	25816847	rs72660960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs72660960-T	0.55503	7E-12		0.0274346	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
781	chr1	25818181	25818182	rs115340137	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p36.11	NR	rs115340137-C	NR	1E-32		0.1568	[0.13-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
781	chr1	25818181	25818182	rs115340137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	TMEM57	rs115340137-C	0.00882799999999995	7E-24		0.13218266	[0.11-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25818181	25818182	rs115340137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.11	TMEM57	rs115340137-C	0.00882099999999997	2E-17		0.1125131	[0.087-0.138] unit decrease	Affymetrix [93095623] (imputed)	N
781	chr1	25818397	25818398	rs34791230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs34791230-G	0.555992	2E-8		0.0231786	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
781	chr1	25818397	25818398	rs34791230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1p36.11		rs34791230-G	0.555992	7E-10		0.0254871	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
781	chr1	25818451	25818452	rs72660961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs72660961-C	0.555726	9E-9		0.0237221	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
781	chr1	25818451	25818452	rs72660961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p36.11		rs72660961-C	0.555726	4E-8		0.0212949	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
782	chr1	25866837	25866838	rs61776818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs61776818-C	NR	4E-17		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
782	chr1	25866837	25866838	rs61776818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p36.11	NR	rs61776818-C	NR	6E-18		0.0206	[0.016-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
782	chr1	25866837	25866838	rs61776818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs61776818-C	NR	4E-18		0.0208	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
782	chr1	25867294	25867295	rs61776819	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	1p36.11		rs61776819-T	0.0133098	3E-7		2.0453	NR	Affymetrix [7846216] (imputed)	N
782	chr1	25877491	25877492	rs75446219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.11	LDLRAP1	rs75446219-T	0.034708	5E-37		0.07730343	[0.065-0.089] unit increase	Affymetrix [93095623] (imputed)	N
782	chr1	25877491	25877492	rs75446219	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.11	LDLRAP1	rs75446219-T	0.036	4E-16		0.08055856	[0.061-0.1] unit increase	Affymetrix [~ 2500000] (imputed)	N
782	chr1	25884496	25884497	rs34136392	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs34136392-G	0.54208	2E-9		0.1688	[0.11-0.22] unit decrease	Illumina [17926605] (imputed)	N
782	chr1	25884496	25884497	rs34136392	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p36.11		rs34136392-G	0.54208	2E-9		0.1667	[0.11-0.22] unit decrease	Illumina [17926605] (imputed)	N
782	chr1	25888239	25888240	rs75471743	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	1p36.11	NR	rs75471743-G		9E-6		0.2077	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
782	chr1	25889421	25889422	rs12096438	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p36.11	LDLRAP1	rs12096438-T	0.5328	7E-10		0.02241256	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
782	chr1	25889421	25889422	rs12096438	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p36.11	LDLRAP1	rs12096438-T	0.5326	5E-25		0.03717434	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
782	chr1	25892297	25892298	rs4400597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4400597-G	0.531626	7E-74				Affymetrix, Illumina [17210439] (imputed)	N
782	chr1	25892524	25892525	rs3856240	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.11		rs3856240-T	0.535	3E-10				Affymetrix [10369434] (imputed)	N
782	chr1	25892524	25892525	rs3856240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	LDLRAP1	rs3856240-C	0.465461	2E-24		0.023103157	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
782	chr1	25893931	25893932	rs397860393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p36.11	LDLRAP1	rs397860393-A	0.460361	8E-49		0.03279524	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr1	25894852	25894853	rs11563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p36.11	LDLRAP1	rs11563-T	0.462168	6E-14		0.016878508	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr1	25895405	25895406	rs3924236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p36.11	NR	rs3924236-C	0.537873	8E-75		0.034877	[0.031-0.039] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
783	chr1	25971645	25971646	rs12728258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs12728258-C	NR	3E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
783	chr1	26007567	26007568	rs12032634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1C1	5,366 Icelandic ancestry individuals	NA	1p36.11		rs12032634-T	0.4451	4E-21		0.171298	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
783	chr1	26007942	26007943	rs78394455	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MAN1C1	rs78394455-?	NR	1E-10		2.93409	[NR] unit decrease	Affymetrix [NR] (imputed)	N
783	chr1	26009458	26009459	rs3014707	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	1p36.11	MAN1C1	rs3014707-?	0.0	9E-11				Affymetrix [547296]	N
783	chr1	26015779	26015780	rs2786865	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	1p36.11	NR	rs2786865-A	0.09789	2E-7		0.2604	[0.16-0.36] unit increase	Illumina [10677593] (imputed)	N
783	chr1	26045250	26045251	rs2092319	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	1p36.11	Intergenic	rs2092319-A	0.1074	4E-7	(Nasal protrusion)	0.4176	[0.25-0.58] unit increase	Illumina [34985077] (imputed)	N
783	chr1	26070908	26070909	rs3767879	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.11	MAN1C1	rs3767879-C	0.4646875	9E-14	(MAN1C1, 13427_66_3)	0.17202054	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
784	chr1	26136243	26136244	rs121908188	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1p36.11		rs121908188-?	NR	5E-11		0.178288	[0.12-0.23] unit decrease	NR [9800000] (imputed)	N
784	chr1	26137816	26137817	rs74753273	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SELENON	rs74753273-?	NR	9E-11	(male)	1.81887	[NR] unit decrease	Affymetrix [NR] (imputed)	N
784	chr1	26137816	26137817	rs74753273	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SELENON	rs74753273-?	NR	4E-13		2.08891	[NR] unit decrease	Affymetrix [NR] (imputed)	N
784	chr1	26146513	26146514	rs1127818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p36.11		rs1127818-C	NR	1E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
784	chr1	26146513	26146514	rs1127818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p36.11		rs1127818-C	NR	3E-9		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p36.11	MTFR1L	rs1127818-C	0.530001	2E-13		0.016217515	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs1127818-C	0.545272	9E-14				Affymetrix, Illumina [24332387] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p36.11	NR	rs1127818-C	0.526002	1E-15		0.01484	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs1127818-C	0.544262	8E-12				Affymetrix, Illumina [24653286] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p36.11	NR	rs1127818-C	0.525537	2E-12		0.013071	[0.0094-0.0167] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
784	chr1	26146513	26146514	rs1127818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p36.11	NR	rs1127818-C	0.525498	8E-12		0.012678	[0.009-0.0163] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
784	chr1	26146513	26146514	rs1127818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p36.11		rs1127818-?	NR	9E-15				NR [~ 8900000] (imputed)	N
784	chr1	26152080	26152081	rs3767876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs3767876-G	0.5461	8E-12				Affymetrix, Illumina [24558453] (imputed)	N
784	chr1	26152080	26152081	rs3767876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p36.11		rs3767876-?	NR	4E-8				NR [~ 8900000] (imputed)	N
784	chr1	26173755	26173756	rs4659386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p36.11	NR	rs4659386-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
784	chr1	26178948	26178949	rs12047425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p36.11		rs12047425-G	NR	3E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
784	chr1	26183738	26183739	rs550369338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p36.11	AUNIP	rs550369338-A	0.53762	6E-12		0.01529609	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
784	chr1	26183738	26183739	rs550369338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p36.11	AUNIP	rs550369338-A	0.537628	3E-11		0.0147493845	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
784	chr1	26187974	26187975	rs12067275	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	1p36.11	NR	rs12067275-?		3E-6				Illumina [892589]	N
784	chr1	26197062	26197063	rs807067	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p36.11	NR	rs807067-T	0.52	2E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix [2446094] (imputed)	N
784	chr1	26197062	26197063	rs807067	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p36.11	NR	rs807067-T	0.52	5E-8				Affymetrix [2446094] (imputed)	N
784	chr1	26201163	26201164	rs213624	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p36.11	NA	rs213624-A	0.5263	3E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
784	chr1	26208656	26208657	rs807069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p36.11	NR	rs807069-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
785	chr1	26222521	26222522	rs187415452	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	1p36.11	NR	rs187415452-G		7E-6		0.243	[0.14-0.35] SD units increase	NR [10700000] (imputed)	N
785	chr1	26296526	26296527	rs55904918	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PAFAH2	rs55904918-?	NR	2E-8		2.21111	[NR] unit decrease	Affymetrix [NR] (imputed)	N
785	chr1	26329148	26329149	rs116127176	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x experiences in childhood (felt loved by family member) interaction	11,465 European ancestry individuals	NA	1p36.11		rs116127176-?	NR	4E-8		2.0299	[1.3-2.76] unit decrease	Affymetrix [NR] (imputed)	N
785	chr1	26337657	26337658	rs35610657	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p36.11	SCARNA18	rs35610657-A	0.9422	7E-6		0.072	[0.041-0.103] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr1	26343111	26343112	rs2997457	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	1p36.11	NR	rs2997457-T	0.1587	1E-6		0.1984	[0.12-0.28] unit increase	Illumina [10677593] (imputed)	N
786	chr1	26376028	26376029	rs114098943	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1p36.11	NR	rs114098943-G	0.9582778	4E-6		1.0718113	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
786	chr1	26387422	26387423	rs2997447	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p36.11	NR	rs2997447-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	5E-14	(0 ms)	0.0673948	[0.05-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	4E-12	(6 ms)	0.0614992	[0.044-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	3E-13	(-6 ms)	0.0640198	[0.047-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	3E-10	(8 ms)	0.0563372	[0.039-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	2E-13	(-2 ms)	0.0660455	[0.049-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	1E-14	(2 ms)	0.0673122	[0.05-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	1E-13	(4 ms)	0.0652622	[0.048-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	1E-13	(-4 ms)	0.0647637	[0.048-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26393504	26393505	rs61775418	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p36.11	TRIM63	rs61775418-G	0.884979	1E-12	(-8 ms)	0.062089	[0.045-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
786	chr1	26396064	26396065	rs9438610	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.11	NR	rs9438610-G	0.1966	7E-10		0.0313	[0.021-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
786	chr1	26403990	26403991	rs3008233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.11	NR	rs3008233-T	NR	2E-21		0.0296	[0.024-0.036] unit increase	Affymetrix [9000000] (imputed)	N
786	chr1	26411274	26411275	rs61775431	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.11	NR	rs61775431-?	NR	3E-9		0.17244	[0.12-0.23] unit increase	Affymetrix [7794483] (imputed)	N
786	chr1	26411274	26411275	rs61775431	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p36.11	NR	rs61775431-?	NR	2E-6	(male)	0.22003	[0.13-0.31] unit increase	Affymetrix [7794483] (imputed)	N
786	chr1	26439828	26439829	rs183758663	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p36.11	PDIK1L	rs183758663-A	0.964	8E-7	(EA)	0.299	[0.18-0.42] unit increase	Illumina [NR] (imputed)	N
786	chr1	26445503	26445504	rs12088601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs12088601-?	NR	3E-33				NR [~ 8900000] (imputed)	N
786	chr1	26474438	26474439	rs4281320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.11		rs4281320-?	NR	8E-9				NR [~ 8900000] (imputed)	N
786	chr1	26475520	26475521	rs868551	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p36.11	FAM110D	rs868551-A	0.8231	2E-6		0.0397	[0.023-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
787	chr1	26488946	26488947	rs12069762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p36.11	FAM110D	rs12069762-T	NR	2E-8		0.019769	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
787	chr1	26489632	26489633	rs7546500	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.11	FAM110D	rs7546500-T	0.672633	7E-16		0.0157956	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
787	chr1	26489632	26489633	rs7546500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.11		rs7546500-?	NR	2E-15				NR [~ 8900000] (imputed)	N
787	chr1	26489632	26489633	rs7546500	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.11		rs7546500-?	NR	3E-14		0.0162531	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
787	chr1	26507611	26507612	rs35600413	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p36.11	CNKSR1	rs35600413-A	0.967	2E-6	(EA)	0.277	[0.16-0.39] unit increase	Illumina [NR] (imputed)	N
787	chr1	26519292	26519293	rs56177125	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p36.11	CATSPER4	rs56177125-G	0.959	9E-7	(EA)	0.258	[0.16-0.36] unit increase	Illumina [NR] (imputed)	N
787	chr1	26521139	26521140	rs11809207	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	1p36.11	CATSPER4	rs11809207-?	0.23	6E-8		0.07	[0.04-0.10] s.d. increase	Illumina [229216]	N
787	chr1	26528178	26528181	rs369709025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p36.11	CATSPER4	rs369709025-C	NR	1E-9		0.0216754	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
787	chr1	26528178	26528181	rs369709025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p36.11	CATSPER4	rs369709025-C	NR	4E-9		0.0209296	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
787	chr1	26528178	26528181	rs369709025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p36.11	CATSPER4	rs369709025-C	NR	4E-8		0.0198319	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
787	chr1	26568541	26568542	rs10902723	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	CEP85/CCDC21	rs10902723-G	0.411	9E-6	(TBF-b1 )	0.01	[NR] pg/mL increase	Illumina [899892]	N
787	chr1	26580789	26580790	rs4659415	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	1p36.11	NR	rs4659415-T	0.239	4E-8		0.039299153	[0.025-0.053] unit increase	NR [1977400] (imputed)	N
787	chr1	26588232	26588233	rs34240339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11	CEP85	rs34240339-A	0.9070581	3E-9		0.023805799	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
787	chr1	26601569	26601570	rs11577318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.11	CEP85	rs11577318-G	0.185831	2E-12		0.020131588	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
787	chr1	26601569	26601570	rs11577318	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p36.11	CEP85	rs11577318-G	0.18	3E-8				NR [> 9500000] (imputed)	N
787	chr1	26601569	26601570	rs11577318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p36.11	CEP85	rs11577318-G	0.1856	2E-11		0.03076225	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr1	26619648	26619649	rs6598955	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	UBXN11	rs6598955-A	0.256	7E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
788	chr1	26619648	26619649	rs6598955	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	UBXN11	rs6598955-A	0.256	4E-6	(HOMA-IR)	0.03	[NR] unit increase	Illumina [899892]	N
788	chr1	26619988	26619989	rs10794527	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p36.11	AIM1L	rs10794527-T	0.0766	3E-9		0.7518	[0.5-1] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
788	chr1	26620805	26620806	rs56039743	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p36.11	Intergenic	rs56039743-T	NR	3E-7	(between families)	5.112	unit decrease	Affymetrix [up to 15107142] (imputed)	N
788	chr1	26624269	26624270	rs11583258	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p36.11		rs11583258-T	0.3	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
788	chr1	26627282	26627283	rs4291487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs4291487-?	NR	1E-8				NR [~ 8900000] (imputed)	N
788	chr1	26637218	26637221	rs532737731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	UBXN11	rs532737731-T	0.9072178	1E-10		0.0258518	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr1	26638221	26638222	rs11247908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p36.11	NR	rs11247908-A	0.172916	2E-32		0.029245	[0.024-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
788	chr1	26645956	26645956	rs146201400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p36.11		rs146201400-GA	NR	3E-9		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
788	chr1	26645956	26645956	rs146201400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p36.11	CD52	rs146201400-GA	0.7573	7E-16		0.03365638	[0.025-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr1	26646725	26646726	rs1071849	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p36.11		rs1071849-A	0.237	6E-15				Affymetrix [10369434] (imputed)	N
788	chr1	26646725	26646726	rs1071849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p36.11	CD52	rs1071849-G	0.762465	7E-13		0.018707309	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr1	26646725	26646726	rs1071849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs1071849-G	0.705887	8E-13				Affymetrix, Illumina [19872809] (imputed)	N
788	chr1	26646725	26646726	rs1071849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p36.11	NR	rs1071849-G	0.762221	4E-15		0.018334	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
788	chr1	26646725	26646726	rs1071849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.11		rs1071849-?	NR	1E-12				NR [~ 8900000] (imputed)	N
788	chr1	26647948	26647949	rs7416513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p36.11		rs7416513-C	NR	2E-25		0.0241	[0.02-0.029] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
788	chr1	26647948	26647949	rs7416513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.11	UBXN11	rs7416513-C	0.761865	4E-42		0.035279505	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
788	chr1	26647948	26647949	rs7416513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs7416513-C	0.707912	4E-32				Affymetrix, Illumina [23467995] (imputed)	N
788	chr1	26648550	26648551	rs11247913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.11	AIM1L	rs11247913-G	0.237876	7E-29		0.0288796	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
788	chr1	26650549	26650550	rs11247915	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p36.11	AIM1L	rs11247915-A	0.233	5E-6	(Calorimeter activity )	0.03	[NR] counts/d increase	Illumina [899892]	N
788	chr1	26653972	26653973	rs67397717	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p36.11	AIM1L	rs67397717-C	0.6571	8E-12		0.02593297	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr1	26655613	26655614	rs12059495	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p36.11	NR	rs12059495-G	0.414335	5E-11		0.0204001	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
788	chr1	26679040	26679041	rs12031946	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p36.11	AIM1L	rs12031946-C	0.13	2E-9		0.59	[0.39-0.79] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
788	chr1	26728848	26728849	rs79954464	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		1p36.11	NR	rs79954464-G	0.9710358	7E-6		1.1235955	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
789	chr1	26741543	26741544	rs7532866	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p36.11	LIN28	rs7532866-A	0.67	3E-8		0.021	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
789	chr1	26746198	26746199	rs4274112	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p36.11	LIN28A	rs4274112-A	0.6267	2E-28		0.0217	[0.018-0.026] unit increase	Affymetrix [18391927] (imputed)	N
789	chr1	26746198	26746199	rs4274112	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1p36.11	NR	rs4274112-G	0.374561	8E-9		0.0588798	[0.039-0.079] unit decrease	Affymetrix [21375087] (imputed)	N
789	chr1	26750258	26750262	rs147518833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p36.11	LIN28A	rs147518833-G	0.204436	3E-26		0.0294976	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
789	chr1	26750258	26750262	rs147518833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p36.11	LIN28A	rs147518833-G	0.204452	1E-16		0.022751678	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
789	chr1	26750982	26750983	rs6694351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p36.11		rs6694351-?	NR	1E-8				NR [~ 8900000] (imputed)	N
789	chr1	26757610	26757610	rs77476394	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	1p36.11	LIN28A, DHDDS	rs77476394-CTAAA	0.208732	2E-8		0.01572	[0.01-0.021] unit decrease	Affymetrix [19400838] (imputed)	N
789	chr1	26759148	26759149	rs3811461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.11	NR	rs3811461-G	NR	3E-9		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
789	chr1	26759148	26759149	rs3811461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.11	NR	rs3811461-G	NR	1E-13		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
789	chr1	26769100	26769101	rs761670999	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	DHDDS	rs761670999-?		4E-10		1.0414	[0.71-1.37] unit increase	Illumina [31500000] (imputed)	N
789	chr1	26775366	26775367	rs9438626	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.11	DHDDS	rs9438626-C	0.21	8E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
789	chr1	26775366	26775367	rs9438626	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.11	DHDDS	rs9438626-C	0.21	3E-11		0.0189	[0.013-0.024] unit increase	Affymetrix [19819130] (imputed)	N
789	chr1	26796921	26796922	rs12096239	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p36.11	DHDDS	rs12096239-C	0.253	4E-7		0.0146	[0.0089-0.0203] unit decrease	Affymetrix [19819130] (imputed)	N
789	chr1	26796921	26796922	rs12096239	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.11	DHDDS	rs12096239-C	0.253	8E-9		0.0154	[0.01-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
789	chr1	26796921	26796922	rs12096239	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p36.11	DHDDS	rs12096239-C	0.253	2E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
789	chr1	26798643	26798644	rs6703872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.11		rs6703872-?	NR	3E-8				NR [~ 8900000] (imputed)	N
789	chr1	26803429	26803430	rs2219320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs2219320-?	NR	5E-46				NR [~ 8900000] (imputed)	N
789	chr1	26806777	26806777	rs142065142	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p36.11	HMGN2, RPS6KA1	rs142065142-?	NR	2E-6		0.141193	[0.083-0.199] unit increase	Illumina [at least 950000] (imputed)	N
789	chr1	26834391	26834392	rs71640328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p36.11		rs71640328-G	NR	4E-11		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
789	chr1	26834391	26834392	rs71640328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p36.11		rs71640328-G	NR	8E-15		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
789	chr1	26834959	26834960	rs71514273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.11		rs71514273-?	NR	1E-14				NR [~ 8900000] (imputed)	N
789	chr1	26843969	26843970	rs12733867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p36.11		rs12733867-G	NR	8E-33		0.0194	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
789	chr1	26850405	26850406	rs4402166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p36.11	DPPA2P2	rs4402166-T	0.743505	1E-9		0.015366299	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
789	chr1	26859694	26859695	rs112750178	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p36.11		rs112750178-T	0.762	1E-9				Affymetrix [10369434] (imputed)	N
789	chr1	26859694	26859695	rs112750178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.11	RPS6KA1	rs112750178-C	0.237366	2E-9		0.015727965	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
789	chr1	26859694	26859695	rs112750178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p36.11	NR	rs112750178-C	0.238845	8E-17		0.018642	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
789	chr1	26859694	26859695	rs112750178	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.11	NR	rs112750178-T	0.763205	2E-9		0.0143063	[0.0096-0.019] unit decrease	NR [NR]	N
789	chr1	26862144	26862145	rs4970483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p36.11		rs4970483-G	NR	1E-19		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
789	chr1	26865970	26865971	rs1002487	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	1p36.11	RPS6KA1	rs1002487-C	NR	6E-11		6.551	[NR] unit increase	Illumina [632375]	N
789	chr1	26865970	26865971	rs1002487	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	1p36.11	RPS6KA1	rs1002487-C	NR	7E-11		6.517	z-score increase	Illumina [632375]	N
789	chr1	26868638	26868639	rs6685701	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p36.11	NR	rs6685701-G	0.7212	1E-8		0.0296	[0.019-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
790	chr1	26871199	26871200	rs4970485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p36.11	RPS6KA1	rs4970485-T	0.204257	4E-34		0.03320932	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
790	chr1	26871199	26871200	rs4970485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs4970485-T	0.294492	2E-19				Affymetrix, Illumina [20825802] (imputed)	N
790	chr1	26871199	26871200	rs4970485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p36.11	NR	rs4970485-T	0.204039	3E-19		0.021383	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
790	chr1	26871199	26871200	rs4970485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p36.11		rs4970485-?	NR	3E-17				NR [~ 8900000] (imputed)	N
790	chr1	26871668	26871669	rs4970486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p36.11		rs4970486-T	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
790	chr1	26872831	26872832	rs17162190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p36.11	RPS6KA1	rs17162190-A	0.1995	2E-10		0.02795862	[0.019-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
790	chr1	26883510	26883511	rs2229712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p36.11	RPS6KA1	rs2229712-C	0.220923	8E-13		0.01898683	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
790	chr1	26883510	26883511	rs2229712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs2229712-C	0.219164	9E-15				Affymetrix, Illumina [23472807] (imputed)	N
790	chr1	26884863	26884864	rs3790645	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	1p36.11	RPS6KA1, LIN28A	rs3790645-?		6E-6	(MCRI)	0.34	[0.2-0.48] unit increase	Illumina [693128]	N
790	chr1	26890835	26890836	rs414546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p36.11	RPS6KA1	rs414546-A	0.206142	1E-15		0.021982666	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
790	chr1	26909764	26909765	rs6598858	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p36.11	RPS6KA1, ARID1A	rs6598858-T	NR	1E-6		0.0958932	[0.057-0.134] unit decrease	Illumina [at least 950000] (imputed)	N
790	chr1	26929001	26929002	rs17162257	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1p36.11	RPS6KA1	rs17162257-?		1E-6				Illumina [859311]	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	3E-15		0.101858	[0.077-0.127] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	3E-12		0.0852072	[0.061-0.109] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	2E-14		0.095511	[0.071-0.12] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	2E-10		0.0836892	[0.058-0.109] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	2E-13		0.0955372	[0.07-0.121] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	2E-13		0.0926364	[0.068-0.117] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	7E-18		0.107336	[0.083-0.132] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976637	6E-9		0.0718665	[0.048-0.096] unit decrease	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	4E-8		0.0678549	[0.044-0.092] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	2E-14		0.0968817	[0.072-0.122] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	6E-10		0.0756645	[0.052-0.1] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	4E-11		0.0814865	[0.057-0.106] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	3E-16		0.104793	[0.08-0.13] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	9E-12		0.0833175	[0.059-0.107] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	4E-13		0.0949527	[0.069-0.121] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p36.11		rs193084249-A	0.976638	4E-14		0.0963647	[0.071-0.121] unit increase	NR [11722792] (imputed)	N
790	chr1	26987645	26987646	rs193084249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p36.11		rs193084249-G	NR	3E-11		0.1357	[0.096-0.176] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
790	chr1	26987645	26987646	rs193084249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p36.11		rs193084249-G	NR	2E-15		0.1506	[0.11-0.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
790	chr1	26987645	26987646	rs193084249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p36.11		rs193084249-G	NR	3E-29		0.0856	[0.071-0.1] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
790	chr1	26987645	26987646	rs193084249	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	1p36.11	ARID1A	rs193084249-?	NR	7E-10		0.143	NR L increase	Affymetrix [9390170] (imputed)	N
790	chr1	26987645	26987646	rs193084249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p36.11		rs193084249-G	0.023681	3E-9		0.04393554	[0.029-0.058] unit increase	Affymetrix [93095623] (imputed)	N
790	chr1	26987645	26987646	rs193084249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.11		rs193084249-G	0.023677	3E-10		0.046745263	[0.032-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
790	chr1	26987645	26987646	rs193084249	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p36.11	ARID1A	rs193084249-A	0.976514	4E-38		0.0828018	[0.07-0.095] unit increase	Affymetrix [NR] (imputed)	N
790	chr1	26987645	26987646	rs193084249	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p36.11	snoU13	rs193084249-G	0.0222331	4E-11		0.13567601	[0.096-0.176] unit increase	Affymetrix [7288503] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	NR	2E-8		0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	0.98	2E-8	(EA)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	NR	2E-6		0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	0.98	2E-6	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	NR	3E-10		0.116	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	0.98	3E-10	(EA)	0.117	unit decrease	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	NR	2E-14		0.114	unit increase	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26987645	26987646	rs193084249	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs193084249-A	0.98	2E-14	(EA)	0.113	unit increase	Affymetrix [at least 7091467] (imputed)	N
790	chr1	26994761	26994762	rs34232231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11		rs34232231-G	0.0964469999999999	3E-9		0.025692428	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	4E-16		0.0349	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	2E-11		0.0288	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	8E-42		0.061	[0.052-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	8E-23		0.0423	[0.034-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	5E-20		0.041	[0.032-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	4E-12		0.0297	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	5E-12		0.0296	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	4E-12		0.0297	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	1E-17		0.0366	[0.028-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	5E-18		0.0371	[0.029-0.046] unit increase	Affymetrix [9000000] (imputed)	N
791	chr1	27001710	27001711	rs34175245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p36.11	NR	rs34175245-G	NR	2E-18		0.0394	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr1	27002646	27002647	rs148268445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p36.11		rs148268445-T	0.923872	4E-12		0.0534697	[0.038-0.069] unit increase	NR [11722792] (imputed)	N
791	chr1	27002646	27002647	rs148268445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p36.11		rs148268445-C	NR	1E-20		0.0408	[0.032-0.049] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
791	chr1	27008266	27008267	rs34217609	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs34217609-T	0.916138	6E-15		0.0567444	[0.043-0.071] unit decrease	NR [11722792] (imputed)	N
791	chr1	27019130	27019131	rs112203773	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p36.11	RP5-968P14.2	rs112203773-A	0.0829	4E-9		0.0381765	[0.025-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
791	chr1	27019743	27019744	rs12738345	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p36.11	NR	rs12738345-T	0.92	3E-21		0.0319	[0.025-0.039] unit decrease	NR [NR]	N
791	chr1	27020011	27020012	rs4466675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p36.11		rs4466675-?	NR	2E-20				NR [~ 8900000] (imputed)	N
791	chr1	27020132	27020133	rs35738294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p36.11		rs35738294-?	NR	2E-8				NR [~ 8900000] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	5E-8		0.0754643	[0.048-0.103] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-14		0.101382	[0.075-0.128] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	1E-12		0.0972894	[0.071-0.124] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-10		0.0860533	[0.059-0.113] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	7E-14		0.101542	[0.075-0.128] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	5E-13		0.0984068	[0.072-0.125] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	1E-8		0.0787302	[0.052-0.106] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	1E-12		0.0971022	[0.07-0.124] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	8E-16		0.107766	[0.082-0.134] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-11		0.0905172	[0.064-0.117] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	3E-14		0.103426	[0.077-0.13] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-8		0.0761172	[0.049-0.103] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-11		0.09079	[0.064-0.118] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	8E-12		0.0932516	[0.067-0.12] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	4E-21		0.120716	[0.096-0.146] unit increase	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	9E-12		0.0932372	[0.066-0.12] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	7E-20		0.113551	[0.089-0.138] unit increase	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	7E-14		0.101061	[0.075-0.128] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	8E-20		0.116131	[0.091-0.141] unit increase	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs114165349-G	0.977045	5E-14		0.102038	[0.076-0.129] unit decrease	NR [11722792] (imputed)	N
791	chr1	27021912	27021913	rs114165349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p36.11		rs114165349-C	NR	4E-29		0.0863	[0.071-0.101] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
791	chr1	27021912	27021913	rs114165349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p36.11		rs114165349-C	NR	1E-22		0.0749	[0.06-0.09] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
791	chr1	27021912	27021913	rs114165349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p36.11		rs114165349-C	NR	8E-33		0.0805	[0.067-0.094] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
791	chr1	27021912	27021913	rs114165349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p36.11		rs114165349-C	NR	4E-31		0.0861	[0.072-0.101] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
791	chr1	27021912	27021913	rs114165349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p36.11	NR	rs114165349-C	NR	1E-24		0.0824	[0.067-0.098] unit increase	Affymetrix [9000000] (imputed)	N
791	chr1	27021912	27021913	rs114165349	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	ARID1A	rs114165349-?		2E-8		0.0995	[0.065-0.134] unit decrease	Illumina [31500000] (imputed)	N
791	chr1	27021912	27021913	rs114165349	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	1p36.11		rs114165349-C	0.038	3E-20		0.2144	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
791	chr1	27021912	27021913	rs114165349	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Membrane-bound aminopeptidase P levels	21,758 European ancestry individuals	9,173 individuals	1p36.11		rs114165349-C	0.036	3E-22		0.4218	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p36.11	ARID1A, RP5-968P14.2	rs114165349-C	0.023299	7E-15		0.066525474	[0.05-0.083] unit increase	Affymetrix [93095623] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p36.11	ARID1A, RP5-968P14.2	rs114165349-C	0.023304	4E-24		0.07583819	[0.061-0.091] unit increase	Affymetrix [93095623] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.11	ARID1A, RP5-968P14.2	rs114165349-C	0.023298	2E-9		0.04442095	[0.03-0.059] unit increase	Affymetrix [93095623] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p36.11	ARID1A	rs114165349-G	0.976844	4E-35		0.0822141	[0.069-0.095] unit decrease	Affymetrix [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p36.11	ARID1A	rs114165349-G	0.976828	8E-16		0.0560406	[0.042-0.07] unit decrease	Affymetrix [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p36.11	ARID1A	rs114165349-G	0.976853	1E-38		0.0900792	[0.076-0.104] unit decrease	Affymetrix [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p36.11	PIGV	rs114165349-?	NR	5E-22		0.0836	[0.068-0.099] unit increase	Affymetrix [5701386] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p36.11	PIGV	rs114165349-?	NR	4E-27		0.0905	[0.076-0.105] unit increase	Affymetrix [5701386] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p36.11	NR	rs114165349-G	0.976894	7E-51		0.147891	[0.13-0.17] unit increase	Affymetrix [16577313] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p36.11	NR	rs114165349-G	0.976559	2E-204		0.0812431	[0.076-0.087] unit increase	Affymetrix [16582909] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p36.11	NR	rs114165349-G	0.976296	3E-82		0.0740086	[0.066-0.082] unit increase	Affymetrix [16585854] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p36.11	NR	rs114165349-G	0.976837	1E-135		0.0898475	[0.082-0.097] unit increase	Affymetrix [16582621] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p36.11	NR	rs114165349-G	0.976559	7E-150		0.0782265	[0.072-0.084] unit increase	Affymetrix [16582965] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p36.11	NR	rs114165349-G	0.976296	1E-52		0.0695129	[0.06-0.079] unit increase	Affymetrix [16585866] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p36.11	NR	rs114165349-G	0.976837	4E-111		0.0871136	[0.079-0.095] unit increase	Affymetrix [16582614] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1p36.11	NR	rs114165349-C	0.023414000000000046	4E-16		0.053148	[0.04-0.066] unit increase	Affymetrix [16583148] (imputed)	N
791	chr1	27021912	27021913	rs114165349	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p36.11	NR	rs114165349-C	0.02369600000000005	4E-28		0.0930986	[0.077-0.109] unit increase	Affymetrix [16585745] (imputed)	N
791	chr1	27021912	27021913	rs114165349	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1p36.11	ARID1A	rs114165349-C	0.0235174	2E-12		0.147253	[0.11-0.19] unit increase	Affymetrix [9463307] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	7E-7				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	4E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	2E-14				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	7E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	4E-13				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	4E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p36.11	ARID1A	rs114165349-C	NR	2E-18				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	7E-156	(EA)			Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p36.11	ARID1A	rs114165349-C	NR	4E-154				Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p36.11	ARID1A	rs114165349-C	NR	6E-9	(EA)	0.023	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p36.11	ARID1A	rs114165349-C	NR	4E-8		0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p36.11	ARID1A	rs114165349-C	NR	5E-7	(EA)	0.03911	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p36.11	ARID1A	rs114165349-C	NR	2E-7		0.03519	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
791	chr1	27021912	27021913	rs114165349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs114165349-?	NR	3E-20				NR [~ 8900000] (imputed)	N
791	chr1	27026986	27026987	rs4579782	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p36.11	ARID1A	rs4579782-G	0.082	3E-8		5.54	z-score increase	Affymetrix [4312306] (imputed)	N
791	chr1	27041713	27041714	rs4589135	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.11	ARID1A	rs4589135-T	0.616955	2E-25		0.0200145	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
791	chr1	27041713	27041714	rs4589135	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.11		rs4589135-?	NR	7E-19		0.0184822	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
791	chr1	27041713	27041714	rs4589135	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.11	ARID1A	rs4589135-T	0.618095	1E-9	(men)	0.0310635	[0.021-0.041] unit increase	NR [17166351] (imputed)	N
791	chr1	27041713	27041714	rs4589135	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p36.11	ARID1A	rs4589135-T	0.616473	4E-11		0.0230113	[0.016-0.03] unit increase	NR [17166351] (imputed)	N
791	chr1	27064381	27064382	rs113184243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p36.11		rs113184243-?	NR	1E-7				NR [~ 8900000] (imputed)	N
791	chr1	27067416	27067417	rs11247594	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	1p36.11	ARID1A	rs11247594-G	0.79	2E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [7567914] (imputed)	N
791	chr1	27075098	27075099	rs374614943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1p36.11		rs374614943-CT	0.914627	3E-10		0.0476243	[0.033-0.062] unit increase	NR [11722792] (imputed)	N
791	chr1	27075098	27075099	rs374614943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p36.11		rs374614943-CT	0.914627	1E-8		0.0431224	[0.028-0.058] unit increase	NR [11722792] (imputed)	N
791	chr1	27092321	27092322	rs34397747	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p36.11	ARID1A	rs34397747-T	0.915688	2E-28		0.0393519	[0.032-0.046] unit increase	Affymetrix [NR] (imputed)	N
791	chr1	27100242	27100243	rs35428899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p36.11		rs35428899-?	NR	5E-9				NR [~ 8900000] (imputed)	N
791	chr1	27104611	27104612	rs71636778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p36.11	ARID1A	rs71636778-C	0.1647	6E-12		0.03296875	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
791	chr1	27104611	27104612	rs71636778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p36.11	ARID1A	rs71636778-C	0.1647	2E-12		0.03400671	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
791	chr1	27121929	27121930	rs146091102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p36.11	PIGV	rs146091102-A	0.0344	8E-9		0.05738722	[0.038-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
791	chr1	27121929	27121930	rs146091102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p36.11	PIGV	rs146091102-A	0.0344	8E-9		0.05734056	[0.038-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
791	chr1	27122151	27122152	rs112535818	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	1p36.11	NR	rs112535818-C	0.9143	9E-15				Affymetrix, Illumina [at least 2500000] (imputed)	N
791	chr1	27122151	27122152	rs112535818	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p36.11	PIGV	rs112535818-G	0.08082	1E-8		1.082	NR	Affymetrix [9154080] (imputed)	N
792	chr1	27134420	27134421	rs35538083	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1p36.11	PIGV	rs35538083-T	0.93	4E-8		0.27	unit decrease	Illumina [5270624] (imputed)	N
792	chr1	27138392	27138393	rs12748152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.11		rs12748152-T	0.0831	1E-10		0.25922403	[0.18-0.34] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
792	chr1	27138392	27138393	rs12748152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.11		rs12748152-T	0.0834	2E-13		0.18591455	[0.14-0.24] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
792	chr1	27138392	27138393	rs12748152	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1p36.11		rs12748152-T	0.0804	2E-6	(EA)	0.0122	[0.0071-0.0173] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
792	chr1	27138392	27138393	rs12748152	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12748152-C	NR	9E-7		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
792	chr1	27138392	27138393	rs12748152	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12748152-C	0.925	7E-6	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
792	chr1	27138392	27138393	rs12748152	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12748152-C	NR	3E-14		0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
792	chr1	27138392	27138393	rs12748152	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs12748152-C	0.925	5E-13	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
792	chr1	27138392	27138393	rs12748152	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	1p36.11	PIGV, NROB2	rs12748152-T	0.0712	1E-9	(Trans-ethnic initial)	0.0372	[0.026-0.049] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
792	chr1	27138392	27138393	rs12748152	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p36.11	PIGV, NROB2	rs12748152-T	0.0712	3E-12	(Trans-ethnic initial)	0.0499	[0.037-0.063] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
792	chr1	27138392	27138393	rs12748152	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1p36.11	PIGV, NROB2	rs12748152-T	0.0712	9E-16	(Trans-ethnic initial)	0.0506	[0.038-0.063] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
792	chr1	27138392	27138393	rs12748152	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1p36.11	PIGV	rs12748152-C		1E-8	(AA)	6.25	[1.47-25]	Affymetrix, Illumina [NR] (imputed)	N
792	chr1	27138392	27138393	rs12748152	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	1p36.11	PIGV, NROB2	rs12748152-C	0.91	1E-6		0.05	[0.03-0.07] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
792	chr1	27138392	27138393	rs12748152	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	PIGV, NR0B2	rs12748152-T	0.09	1E-9		0.037	[NR] mg/dL increase	NR [NR] (imputed)	N
792	chr1	27138392	27138393	rs12748152	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	PIGV, NR0B2	rs12748152-T	0.09	3E-12		0.05	[NR] unit increase	NR [NR] (imputed)	N
792	chr1	27138392	27138393	rs12748152	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p36.11	PIGV, NR0B2	rs12748152-T	0.09	1E-15		0.051	[NR] unit decrease	NR [NR] (imputed)	N
792	chr1	27140059	27140060	rs35755865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p36.11	NR	rs35755865-T	0.034195	3E-16		0.041492	[0.032-0.051] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
792	chr1	27145830	27145830	rs745817551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p36.11		rs745817551-GAAAA	NR	2E-13		0.0389	[0.029-0.049] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
792	chr1	27145830	27145830	rs745817551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.11	RN7SL165P	rs745817551-GAAAA	0.063685	1E-14		0.038192175	[0.028-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr1	27145830	27145830	rs745817551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p36.11	RN7SL165P	rs745817551-GAAAA	0.063724	3E-21		0.04662866	[0.037-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr1	27145830	27145830	rs745817551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.11	RN7SL165P	rs745817551-GAAAA	0.063708	1E-22		0.04822431	[0.039-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr1	27145830	27145830	rs745817551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p36.11	RN7SL165P	rs745817551-GAAAA	0.0637219999999999	1E-13		0.036453974	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
792	chr1	27145830	27145830	rs745817551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p36.11	NR	rs745817551-I	0.064842	4E-21		0.042906	[0.034-0.052] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
792	chr1	27145830	27145830	rs745817551	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.11		rs745817551-?	NR	8E-16		0.0383008	[0.029-0.047] unit increase	Affymetrix [20259828] (imputed)	N
792	chr1	27158843	27158844	rs34924059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p36.11	ZDHHC18	rs34924059-T	0.163564	2E-31		0.034897618	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
792	chr1	27169199	27169200	rs71636784	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	1p36.11	ARID1A, GPATCH3, GPN2, KDF1, NR0B2, NUDC, PIGV, SFN, ZDHHC18	rs71636784-?	NR	6E-12				Affymetrix [up to 7325140] (imputed)	N
792	chr1	27169199	27169200	rs71636784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p36.11		rs71636784-?	NR	2E-13				NR [~ 8900000] (imputed)	N
792	chr1	27169199	27169200	rs71636784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p36.11	Intergenic	rs71636784-T	0.8371	9E-11	(MTAG)	0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr1	27169199	27169200	rs71636784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p36.11	Intergenic	rs71636784-T	0.8371	3E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
792	chr1	27171428	27171429	rs35017323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p36.11		rs35017323-G	NR	1E-13		0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
792	chr1	27172683	27172684	rs116491347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs116491347-T	0.130817	6E-15				Affymetrix, Illumina [24649327] (imputed)	N
792	chr1	27173448	27173449	rs6686271	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	1p36.11		rs6686271-T	0.84	9E-9		0.0693	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
792	chr1	27174179	27174180	rs78614739	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p36.11	ZDHHC18	rs78614739-T	0.1668	2E-8		0.0026	[0.0016-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
792	chr1	27180087	27180088	rs75460349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p36.11		rs75460349-A	0.976743	9E-11		0.0873267	[0.061-0.114] unit decrease	NR [11722792] (imputed)	N
792	chr1	27180087	27180088	rs75460349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs75460349-A	0.976745	3E-12		0.0853141	[0.061-0.109] unit increase	NR [11722792] (imputed)	N
792	chr1	27180087	27180088	rs75460349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs75460349-A	0.976745	3E-8		0.0769836	[0.05-0.104] unit decrease	NR [11722792] (imputed)	N
792	chr1	27180087	27180088	rs75460349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1p36.11		rs75460349-A	0.976745	3E-9		0.0728362	[0.049-0.097] unit increase	NR [11722792] (imputed)	N
792	chr1	27180087	27180088	rs75460349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p36.11		rs75460349-C	NR	3E-17		0.0547	[0.042-0.067] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
792	chr1	27180087	27180088	rs75460349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p36.11		rs75460349-C	NR	7E-15		0.0605	[0.045-0.076] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
792	chr1	27180087	27180088	rs75460349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p36.11		rs75460349-C	NR	2E-13		0.058	[0.043-0.073] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
792	chr1	27180087	27180088	rs75460349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p36.11		rs75460349-C	NR	4E-31		0.0934	[0.078-0.109] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
792	chr1	27180087	27180088	rs75460349	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p36.11	ZDHHC18	rs75460349-A	0.976583	1E-19		0.00674286	[0.0052-0.0082] unit increase	Affymetrix [13995440] (imputed)	N
792	chr1	27180087	27180088	rs75460349	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p36.11	NR	rs75460349-A	0.976364	3E-43		0.0923477	[0.079-0.105] unit increase	NR [NR]	N
792	chr1	27180087	27180088	rs75460349	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.11	ZDHHC18	rs75460349-A	0.9752	1E-9		0.5644	[0.38-0.75] mmHg decrease	Affymetrix [NR] (imputed)	N
792	chr1	27180087	27180088	rs75460349	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p36.11	ZDHHC18	rs75460349-A	0.97	5E-11	(BMI-adjusted)	0.086	[0.061-0.111] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
792	chr1	27180087	27180088	rs75460349	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p36.11	ZDHHC18	rs75460349-A	0.97	5E-10		0.086	[0.059-0.113] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
792	chr1	27181066	27181067	rs41307935	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1p36.11	ZDHHC18	rs41307935-C		1E-7	(AA)	4.5454545	[1.33-16.67]	Affymetrix, Illumina [NR] (imputed)	N
792	chr1	27188356	27188357	rs72307178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p36.11	SFN	rs72307178-T	0.2087	1E-9		0.02819207	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
792	chr1	27188356	27188357	rs72307178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1p36.11	SFN	rs72307178-T	0.2088	3E-12		0.031632	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr1	27188356	27188357	rs72307178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1p36.11	SFN	rs72307178-T	0.2088	5E-14		0.03438564	[0.025-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr1	27192662	27192663	rs546525796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p36.11	SFN	rs546525796-C	0.193769	6E-9		0.016955571	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
792	chr1	27206864	27206865	rs192841644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs192841644-?	NR	3E-8				NR [~ 8900000] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	4E-12		0.0817836	[0.059-0.105] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	8E-12		0.0821731	[0.059-0.106] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	3E-10		0.0772368	[0.053-0.101] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	6E-11		0.0793247	[0.056-0.103] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	4E-13		0.0868233	[0.063-0.11] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	4E-10		0.0762303	[0.052-0.1] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	1E-10		0.0785266	[0.055-0.102] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97185	2E-9		0.0720426	[0.049-0.096] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97185	2E-12		0.0842132	[0.061-0.108] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	3E-9		0.0708904	[0.048-0.094] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	4E-9		0.072954	[0.049-0.097] unit decrease	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	3E-9		0.0706754	[0.047-0.094] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	2E-9		0.0724692	[0.049-0.096] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	8E-13		0.08494	[0.062-0.108] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p36.11		rs182050989-C	0.971816	4E-8		0.0682279	[0.044-0.093] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	7E-16		0.094483	[0.072-0.117] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	3E-14		0.0898128	[0.067-0.113] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	2E-8		0.0706294	[0.046-0.095] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p36.11		rs182050989-C	0.97186	6E-13		0.0875316	[0.064-0.111] unit increase	NR [11722792] (imputed)	N
792	chr1	27262544	27262545	rs182050989	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p36.11		rs182050989-C	0.972	1E-13				Affymetrix [10369434] (imputed)	N
792	chr1	27262544	27262545	rs182050989	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		1p36.11	NUDC	rs182050989-C	NR	8E-12		0.030778	[0.018-0.043] nmol/l increase	NR [19000000] (imputed)	N
792	chr1	27262544	27262545	rs182050989	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p36.11	NR	rs182050989-C	0.971479	1E-12		0.0266455	[0.019-0.034] unit increase	Affymetrix [16578495] (imputed)	N
792	chr1	27262544	27262545	rs182050989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.11		rs182050989-?	NR	6E-12				NR [~ 8900000] (imputed)	N
792	chr1	27262544	27262545	rs182050989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p36.11	NUDC	rs182050989-T	0.0292	2E-12		0.07717716	[0.056-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	1E-17		0.037	[0.029-0.045] unit increase	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	9E-13		0.0309	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	3E-46		0.0649	[0.056-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	2E-19		0.0392	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	2E-22		0.0442	[0.035-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	7E-14		0.0324	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	3E-10		0.0272	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	3E-10		0.0272	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	1E-17		0.0371	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	1E-18		0.0382	[0.03-0.047] unit increase	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	1E-19		0.0411	[0.032-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27272600	27272600	rs145685168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p36.11	NR	rs145685168-ATCT	NR	1E-9		0.0262	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
793	chr1	27278520	27278521	rs3010110	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	1p36.11	KDF1	rs3010110-A	0.261	6E-7		0.12	[0.17-0.07] unit decrease	Affymetrix [7435577] (imputed)	N
793	chr1	27278572	27278573	rs17360994	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p36.11	KDF1	rs17360994-T	0.920195	2E-16		0.00733189	[0.0055-0.0092] unit increase	Affymetrix [13995440] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976798	6E-14		0.0967019	[0.071-0.122] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-22		0.125835	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-8		0.0711546	[0.046-0.096] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	9E-18		0.112505	[0.087-0.138] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-16		0.106845	[0.082-0.132] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-13		0.0982229	[0.072-0.124] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-16		0.107591	[0.082-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-16		0.108332	[0.082-0.134] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	7E-17		0.11099	[0.085-0.137] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	9E-13		0.094448	[0.069-0.12] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-15		0.10629	[0.08-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-15		0.104888	[0.079-0.131] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-11		0.0905928	[0.064-0.117] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	7E-13		0.0950451	[0.069-0.121] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-16		0.107091	[0.081-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-13		0.0984068	[0.072-0.125] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-15		0.105861	[0.08-0.132] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-16		0.107112	[0.081-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-15		0.105989	[0.08-0.132] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-13		0.0981809	[0.072-0.124] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976788	7E-23		0.125166	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976788	5E-10		0.0818364	[0.056-0.108] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976788	5E-12		0.0907507	[0.065-0.116] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-12		0.091471	[0.066-0.117] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	5E-16		0.107122	[0.081-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-16		0.107873	[0.082-0.134] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-13		0.0957666	[0.07-0.122] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976788	1E-8		0.0767246	[0.05-0.103] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	5E-12		0.0903551	[0.065-0.116] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-15		0.105856	[0.08-0.132] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-13		0.0959345	[0.07-0.122] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976788	7E-9		0.0752467	[0.05-0.101] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-16		0.108456	[0.083-0.134] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-16		0.107474	[0.082-0.133] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	9E-14		0.098074	[0.072-0.124] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976779	1E-10		0.0847792	[0.059-0.11] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	7E-11		0.0836229	[0.058-0.109] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-16		0.107596	[0.082-0.134] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976797	4E-8		0.0721335	[0.046-0.098] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-11		0.0872486	[0.062-0.113] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	5E-14		0.0910698	[0.067-0.115] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	9E-13		0.0945925	[0.069-0.121] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976779	8E-10		0.0806193	[0.055-0.106] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	2E-9		0.077154	[0.052-0.102] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	8E-17		0.108586	[0.083-0.134] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-9		0.0766805	[0.051-0.102] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	5E-13		0.0873678	[0.064-0.111] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	4E-13		0.0956811	[0.07-0.122] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	1E-14		0.0983657	[0.073-0.123] unit decrease	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	1p36.11		rs79598313-C	0.976799	3E-8		0.0743626	[0.048-0.101] unit increase	NR [11722792] (imputed)	N
793	chr1	27284912	27284913	rs79598313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-T	NR	1E-13		0.0587	[0.043-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	KDF1	rs79598313-?		5E-11		0.113	[0.079-0.147] unit decrease	Illumina [31500000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	KDF1	rs79598313-?		3E-9		0.1034	[0.069-0.138] unit increase	Illumina [31500000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p36.11	KDF1	rs79598313-?		2E-10		0.119	[0.083-0.155] unit increase	Illumina [31500000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p36.11	NR	rs79598313-C	0.9767	5E-9		0.0867	[0.058-0.116] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
793	chr1	27284912	27284913	rs79598313	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p36.11	KDF1	rs79598313-T	0.0255	1E-15		0.1018	[0.077-0.127] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
793	chr1	27284912	27284913	rs79598313	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p36.11	KDF1	rs79598313-T	0.026	9E-15		0.09962	[0.074-0.125] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
793	chr1	27284912	27284913	rs79598313	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1p36.11	NR	rs79598313-T	0.0272	1E-7	(women)	0.0987	[0.062-0.135] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
793	chr1	27284912	27284913	rs79598313	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1p36.11	NR	rs79598313-T	0.0259	1E-7	(men)	0.1187	[0.075-0.162] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
793	chr1	27284912	27284913	rs79598313	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p36.11	C1orf172	rs79598313-T	0.0236446	2E-15		0.14663698	[0.11-0.18] unit increase	Affymetrix [7288503] (imputed)	N
793	chr1	27284912	27284913	rs79598313	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p36.11	KDF1	rs79598313-C	0.976412	1E-9		0.0376245	[0.026-0.05] unit decrease	NR [13737936] (imputed)	N
793	chr1	27284912	27284913	rs79598313	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p36.11	C1orf172	rs79598313-T	0.0216	3E-19		0.0898	[0.07-0.109] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p36.11	C1orf172	rs79598313-T	0.0251	2E-13		0.5926	[0.43-0.75] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	NR	3E-10		0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	0.979	3E-9	(EA)	0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	NR	5E-8		0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	0.979	3E-8	(EA)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	NR	1E-14		0.098	unit increase	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p36.11	NR	rs79598313-C	0.979	4E-14	(EA)	0.099	unit increase	Affymetrix [at least 7091467] (imputed)	N
793	chr1	27284912	27284913	rs79598313	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p36.11	PIGV, NROB2	rs79598313-T	0.02	7E-10		0.12	[0.083-0.157] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
793	chr1	27285194	27285195	rs12742376	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	1p36.11	C1orf172	rs12742376-T	NR	1E-8				NR [2501543] (imputed)	N
793	chr1	27292461	27292462	rs6656815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p36.11		rs6656815-?	NR	1E-8				NR [~ 8900000] (imputed)	N
793	chr1	27303883	27303884	rs3010106	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p36.11		rs3010106-?	NR	7E-20		0.0192333	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
793	chr1	27312815	27312816	rs4970469	28449029	Munz M	2017-04-25	Hum Mol Genet	A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis.	Aggressive periodontitis	851 European ancestry cases, 6,836 European ancestry controls	223 cases, up to 564 controls	1p36.11	OSTCP2	rs4970469-G	0.90	1E-6		1.52	[1.29-1.81]	Illumina [at least 5870152] (imputed)	N
793	chr1	27321793	27321794	rs148609498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p36.11		rs148609498-?	NR	2E-8				NR [~ 8900000] (imputed)	N
793	chr1	27325531	27325532	rs6658653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p36.11	TRNP1	rs6658653-C	0.055273	3E-10		0.030771194	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr1	27327821	27327822	rs71638504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p36.11	TRNP1, FAM46B	rs71638504-A	0.056252	2E-12		0.034532536	[0.025-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr1	27361218	27361219	rs6669265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p36.11	NR	rs6669265-A	NR	1E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr1	27388484	27388485	rs12742796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p36.11	NR	rs12742796-G	0.0870276	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
794	chr1	27410175	27410176	rs72651595	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	1p36.11		rs72651595-?	NR	9E-6				Illumina [7401356] (imputed)	N
794	chr1	27451205	27451206	rs79540541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p36.11	NR	rs79540541-A	NR	7E-12		0.0295	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr1	27473348	27473349	rs6691248	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p36.11	SLC9A1	rs6691248-?		9E-6				Illumina [4322238] (imputed)	N
796	chr1	27661036	27661037	rs12565684	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	1p36.11	TMEM222	rs12565684-?	NR	8E-6				Illumina [659211]	N
796	chr1	27686984	27686985	rs114065221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p36.11		rs114065221-A	0.01344	2E-45		1.11621	[0.96-1.27] unit decrease	Illumina [7506463] (imputed)	N
796	chr1	27687100	27687101	rs150814911	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p36.11		rs150814911-T	0.0137	5E-45		1.06753	[0.92-1.22] unit decrease	Illumina [7506463] (imputed)	N
796	chr1	27709019	27709020	rs2504779	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.11		rs2504779-T	0.9081	2E-12		0.26001698	[0.18-0.34] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
796	chr1	27709019	27709020	rs2504779	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.11		rs2504779-T	0.9082	2E-8		0.15219748	[0.099-0.206] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
796	chr1	27709019	27709020	rs2504779	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	1p36.11		rs2504779-T	0.9104	1E-8		5.72696	z score increase	Affymetrix, Illumina [239843] (imputed)	N
796	chr1	27709019	27709020	rs2504779	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1p36.11	CD164L2	rs2504779-A	NR	6E-6	(fixed)	1.0737679		Illumina [87827]	N
796	chr1	27709857	27709858	rs734725	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p36.11		rs734725-T	0.06595	8E-79		0.665048	[0.6-0.73] unit decrease	Illumina [7506463] (imputed)	N
796	chr1	27710875	27710876	rs2504780	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Ficolin 3 plasma levels	400 French ancestry individuals	NA	1p36.11		rs2504780-T	NR	8E-13		0.253	[0.18-0.32] ug/mL decrease	Illumina [5201092] (imputed)	N
796	chr1	27713498	27713499	rs74061781	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p36.11		rs74061781-A	0.06568	9E-66		0.629135	[0.56-0.7] unit decrease	Illumina [7506463] (imputed)	N
796	chr1	27716212	27716213	rs2474283	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.11	FCN3	rs2474283-T	0.933125	4E-42	(FCN3, 14077_6_3)	0.6832812	[0.59-0.78] unit increase	Illumina [> 1000000] (imputed)	N
796	chr1	27716212	27716213	rs2474283	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p36.11	FCN3	rs2474283-T	0.933125	1E-48	(FCN3, 5462_62_3)	0.7163745	[0.62-0.81] unit increase	Illumina [> 1000000] (imputed)	N
796	chr1	27731650	27731651	rs11548323	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	1p36.11	NR	rs11548323-?	0.17	2E-6		1.396	[1.219-1.598] unit increase	Illumina [563945]	N
796	chr1	27770481	27770482	rs2504776	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.11	WASF2	rs2504776-T	0.1101	4E-11		0.2909	[0.2-0.38] mmHg decrease	Affymetrix [NR] (imputed)	N
797	chr1	27833184	27833185	rs74063832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MASP1	5,365 Icelandic ancestry individuals	NA	1p36.11		rs74063832-T	0.06489	2E-14		0.295963	[0.22-0.37] unit decrease	Illumina [7506463] (imputed)	N
797	chr1	27844145	27844146	rs74063836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p36.11	intergenic	rs74063836-G	0.081392	2E-10		0.02584899	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
797	chr1	27848633	27848634	rs59180873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p36.11		rs59180873-G	NR	4E-8		0.0831	[0.054-0.113] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
797	chr1	27848633	27848634	rs59180873	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p36.11	RP1-159A19.4	rs59180873-G	0.0777984	4E-8		0.08308208	[0.054-0.113] unit decrease	Affymetrix [7288503] (imputed)	N
797	chr1	27850074	27850075	rs74606343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p36.11		rs74606343-?	NR	2E-8				NR [~ 8900000] (imputed)	N
797	chr1	27857170	27857171	rs7512595	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p36.11	AHDC1	rs7512595-A	0.8558	2E-10		0.204	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
798	chr1	27928639	27928640	rs113716316	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p35.3	AHDC1	rs113716316-G	0.934458	4E-8		1.09	[1.06-1.13]	NR [8126035] (imputed)	N
798	chr1	27928639	27928640	rs113716316	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p35.3	AHDC1	rs113716316-A	0.068	3E-6		0.064	[0.037-0.091] unit decrease	Affymetrix [7947838] (imputed)	N
798	chr1	27931697	27931698	rs4908343	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1p35.3	intergenic	rs4908343-A	NR	4E-6	(fixed)	1.0710077		Illumina [87827]	N
798	chr1	27958101	27958102	rs79532776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p35.3	NR	rs79532776-G	NR	1E-9		0.0309	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
798	chr1	27960831	27960832	rs3737801	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	1p35.3	FGR	rs3737801-C	0.9224	1E-10		0.3886	[0.27-0.51] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
798	chr1	27971091	27971092	rs2076463	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p35.3	IFI6, FGR	rs2076463-G	0.264	2E-8	(Japanese)	0.023	[0.015-0.031] unit decrease	Illumina [6108953] (imputed)	N
798	chr1	27972057	27972058	rs2076460	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p35.3	NR	rs2076460-C	0.3006	4E-9	(East Asian)	0.4158	[0.28-0.55] unit decrease	Illumina [6200000] (imputed)	N
798	chr1	27972057	27972058	rs2076460	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	1p35.3	NR	rs2076460-C	0.3111	2E-6	(East Asian)	0.2277	[0.13-0.32] unit decrease	Illumina [6200000] (imputed)	N
798	chr1	27972057	27972058	rs2076460	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p35.3	NR	rs2076460-C	0.3111	8E-8	(East Asian)	0.2662	[0.17-0.36] unit decrease	Illumina [6200000] (imputed)	N
798	chr1	27972174	27972175	rs1292079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1p35.3		rs1292079-G	0.301749	5E-8		0.0161412	[0.01-0.022] unit decrease	Illumina [13479924] (imputed)	N
798	chr1	28022861	28022862	rs565471584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p35.3	NR	rs565471584-T	0.99617	4E-12		0.0782269	[0.057-0.1] unit increase	Affymetrix [16582621] (imputed)	N
798	chr1	28022861	28022862	rs565471584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p35.3	NR	rs565471584-T	0.99617	3E-11		0.0780409	[0.055-0.101] unit increase	Affymetrix [16582614] (imputed)	N
798	chr1	28032610	28032611	rs79832171	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p35.3		rs79832171-G	0.009813	8E-36		1.11644	[0.94-1.29] unit decrease	Illumina [7506463] (imputed)	N
798	chr1	28032610	28032611	rs79832171	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	1p35.3		rs79832171-G	0.009813	8E-32		1.08902	[0.91-1.27] unit decrease	Illumina [7506463] (imputed)	N
799	chr1	28109631	28109632	rs80194822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p35.3		rs80194822-?	NR	2E-10				NR [~ 8900000] (imputed)	N
799	chr1	28110796	28110797	rs111824905	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p35.3	NR	rs111824905-C	0.0549	4E-9		0.0693	[0.046-0.092] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
800	chr1	28186505	28186506	rs56232812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p35.3	intergenic	rs56232812-C	0.1037	4E-10		0.03718261	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr1	28186505	28186506	rs56232812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p35.3	intergenic	rs56232812-C	0.1038	7E-9		0.03445259	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr1	28186505	28186506	rs56232812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p35.3	intergenic	rs56232812-C	0.1038	5E-9		0.03481523	[0.023-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr1	28186505	28186506	rs56232812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p35.3	intergenic	rs56232812-C	0.1037	5E-9		0.03478097	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr1	28204088	28204089	rs12140013	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1p35.3	THEMIS2	rs12140013-T	0.8112	9E-6		0.0478	[0.027-0.069] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr1	28206249	28206250	rs41284294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p35.3		rs41284294-C	NR	8E-13		0.0791	[0.058-0.101] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
800	chr1	28206249	28206250	rs41284294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p35.3	THEMIS2	rs41284294-C	0.011005	5E-11		0.07012811	[0.049-0.091] unit increase	Affymetrix [93095623] (imputed)	N
800	chr1	28206249	28206250	rs41284294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p35.3	THEMIS2	rs41284294-C	0.010989	2E-12		0.074058056	[0.053-0.095] unit increase	Affymetrix [93095623] (imputed)	N
800	chr1	28206249	28206250	rs41284294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p35.3	NR	rs41284294-C	0.01103	1E-17		0.079853	[0.062-0.098] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
800	chr1	28211383	28211384	rs2236074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p35.3	THEMIS2	rs2236074-A	0.361783	3E-11		0.015358402	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr1	28211383	28211384	rs2236074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs2236074-G	0.63615	5E-12				Affymetrix, Illumina [22063850] (imputed)	N
800	chr1	28211383	28211384	rs2236074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p35.3	NR	rs2236074-G	0.637575	1E-14		0.015436	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
800	chr1	28211649	28211650	rs1467464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p35.3	THEMIS2	rs1467464-C	0.369555	2E-10		0.014855127	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr1	28211649	28211650	rs1467464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p35.3	THEMIS2	rs1467464-C	0.369719	1E-17		0.019565167	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr1	28213156	28213157	rs6565	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p35.3		rs6565-T	0.63	5E-9				Affymetrix [10369434] (imputed)	N
800	chr1	28213156	28213157	rs6565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p35.3		rs6565-?	NR	2E-10				NR [~ 8900000] (imputed)	N
800	chr1	28213212	28213213	rs1474908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p35.3		rs1474908-G	NR	1E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
800	chr1	28214280	28214281	rs6660899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p35.3		rs6660899-?	NR	1E-10				NR [~ 8900000] (imputed)	N
800	chr1	28216190	28216191	rs10751725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p35.3	THEMIS2, RPA2	rs10751725-A	0.369764	8E-17		0.019399373	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr1	28216735	28216736	rs9701457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p35.3	THEMIS2, RPA2	rs9701457-T	0.364246	3E-15		0.018113347	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr1	28216735	28216736	rs9701457	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p35.3	NR	rs9701457-T	0.365824	6E-22		0.018485	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
800	chr1	28216735	28216736	rs9701457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p35.3		rs9701457-?	NR	2E-14				NR [~ 8900000] (imputed)	N
800	chr1	28218099	28218100	rs7356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p35.3	NR	rs7356-C	0.371122	2E-33		0.022914	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
800	chr1	28219657	28219658	rs17185038	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p35.3	RPA2	rs17185038-C	0.933346	3E-8		0.0211879	[0.014-0.029] unit decrease	Affymetrix [NR] (imputed)	N
800	chr1	28228527	28228528	rs11286461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p35.3		rs11286461-T	NR	4E-13		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
800	chr1	28229680	28229681	rs11247712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs11247712-T	0.377521	2E-21				Affymetrix, Illumina [23472807] (imputed)	N
800	chr1	28229680	28229681	rs11247712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p35.3	NR	rs11247712-T	0.368908	3E-24		0.019902	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
800	chr1	28234998	28234999	rs2474470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs2474470-T	0.388104	2E-20				Affymetrix, Illumina [24649327] (imputed)	N
800	chr1	28242446	28242447	rs11247718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs11247718-T	0.415426	2E-31				Affymetrix, Illumina [24588908] (imputed)	N
800	chr1	28242533	28242534	rs12740790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p35.3		rs12740790-?	NR	2E-8				NR [~ 8900000] (imputed)	N
800	chr1	28243695	28243696	rs34341922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p35.3	RPA2	rs34341922-A	0.629055	7E-21		0.021817796	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
800	chr1	28254135	28254136	rs188393352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs188393352-G	0.00993356	2E-15				Affymetrix, Illumina [23467995] (imputed)	N
800	chr1	28262408	28262409	rs4409675	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		1p35.3	NR	rs4409675-T		2E-6		0.058	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
800	chr1	28282291	28282292	rs3813803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p35.3		rs3813803-?	NR	2E-9				NR [~ 8900000] (imputed)	N
800	chr1	28282291	28282292	rs3813803	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	1p35.3	NR	rs3813803-G	0.27	1E-24		1.65	[NR]	Illumina [747089]	N
800	chr1	28298950	28298951	rs6699701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p35.3		rs6699701-T	NR	4E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
800	chr1	28298950	28298951	rs6699701	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p35.3	EYA3	rs6699701-T	0.3123	2E-10		0.0148	[0.01-0.019] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
800	chr1	28309721	28309722	rs11247731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p35.3		rs11247731-T	NR	7E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
801	chr1	28313268	28313269	rs148553452	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	1p35.3	EYA3	rs148553452-?	NR	4E-8		1.7	[1.09-2.31] uM decrease	Affymetrix [9432837] (imputed)	N
801	chr1	28349371	28349372	rs115532737	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	1p35.3	NR	rs115532737-T	0.028	8E-6		0.8	[0.45-1.15] unit increase	Illumina [9469131] (imputed)	N
801	chr1	28406046	28406047	rs12144063	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	1p35.3		rs12144063-T	0.37	2E-9				Affymetrix, Illumina, Perlegen [NR] (imputed)	N
801	chr1	28406046	28406047	rs12144063	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p35.3		rs12144063-T	0.37	1E-10		3.3E-4	[-0.00281-0.00347] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
801	chr1	28406046	28406047	rs12144063	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p35.3		rs12144063-?	NR	1E-6		1.26E-6	[-0.00564-0.00565] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
801	chr1	28406046	28406047	rs12144063	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels in non smokers	18,641 African ancestry individuals, 10,777 Asian ancestry individuals, 75,138 European ancestry individuals, 5,873 Hispanic individuals	NA	1p35.3		rs12144063-?	NR	6E-6		0.0056	[0.0031-0.0081] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
801	chr1	28406046	28406047	rs12144063	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1p35.3		rs12144063-?	NR	3E-7		0.0059	[0.0035-0.0083] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
802	chr1	28455757	28455758	rs149433215	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	1p35.3	NR	rs149433215-A	0.007795	5E-6		0.7888	[0.45-1.13] unit increase	Illumina [10677593] (imputed)	N
802	chr1	28506064	28506065	rs1629168	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p35.3	PTAFR	rs1629168-?	NR	4E-8		1.049979	NR	Affymetrix [9154080] (imputed)	N
802	chr1	28515802	28515803	rs61786981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p35.3		rs61786981-A	NR	8E-17		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
802	chr1	28537526	28537527	rs520800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p35.3	DNAJC8	rs520800-T	0.290313	4E-10		0.01523072	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
802	chr1	28537526	28537527	rs520800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p35.3	NR	rs520800-T	0.291478	4E-11		0.013359	[0.0094-0.0173] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
802	chr1	28538203	28538204	rs490633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs490633-A	0.256776	5E-10				Affymetrix, Illumina [24558453] (imputed)	N
802	chr1	28544117	28544118	rs11247763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p35.3		rs11247763-?	NR	1E-7				NR [~ 8900000] (imputed)	N
802	chr1	28553615	28553616	rs375175168	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	1p35.3	NR	rs375175168-TTTTTTTG		4E-7		0.435	[NR] unit decrease	Illumina [NR]	N
802	chr1	28572316	28572317	rs12129745	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p35.3	DNAJC8, SESN2	rs12129745-G	0.68	2E-13		7.32	z-score increase	Affymetrix [4314223] (imputed)	N
803	chr1	28598286	28598287	rs74896528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	1p35.3		rs74896528-T	0.054433	9E-11		0.0498562	[0.035-0.065] unit decrease	Illumina [13475706] (imputed)	N
803	chr1	28598286	28598287	rs74896528	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p35.3	SESN2	rs74896528-T	0.0564	1E-9	(East Asian)	0.0896	[0.061-0.118] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
803	chr1	28598286	28598287	rs74896528	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	1p35.3	SESN2	rs74896528-T	0.057	8E-9	(Japanese)	0.057	[0.037-0.077] unit decrease	Illumina [5864938] (imputed)	N
803	chr1	28620729	28620730	rs75173727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p35.3		rs75173727-?	NR	2E-16				NR [~ 8900000] (imputed)	N
803	chr1	28623816	28623817	rs10127666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p35.3		rs10127666-A	NR	9E-11		0.0225	[0.016-0.029] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
803	chr1	28631299	28631300	rs76022305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p35.3		rs76022305-T	0.068715	9E-14		0.032556035	[0.024-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr1	28631299	28631300	rs76022305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p35.3		rs76022305-T	0.068715	3E-15		0.034465592	[0.026-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr1	28631299	28631300	rs76022305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs76022305-T	0.074219	1E-17				Affymetrix, Illumina [19872809] (imputed)	N
803	chr1	28631299	28631300	rs76022305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p35.3	NR	rs76022305-T	0.068784	9E-19		0.034651	[0.027-0.042] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
803	chr1	28631492	28631493	rs185103287	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	1p35.3	NR	rs185103287-G	0.021	1E-6		0.99	[0.6-1.38] unit increase	Illumina [9469131] (imputed)	N
803	chr1	28634119	28634120	rs6677771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p35.3		rs6677771-G	0.207661	3E-10		0.017983729	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr1	28659974	28659975	rs61783795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs61783795-G	0.01568	9E-12	(ALDOA)	0.397	NR unit increase	Illumina [1671387] (imputed)	N
803	chr1	28659974	28659975	rs61783795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs61783795-G	0.01568	9E-10	(FKBP1A)	0.02844	NR unit increase	Illumina [1671387] (imputed)	N
803	chr1	28659974	28659975	rs61783795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs61783795-G	0.01568	4E-10	(PKM)	0.4818	NR unit increase	Illumina [1671387] (imputed)	N
803	chr1	28659974	28659975	rs61783795	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs61783795-G	0.01568	2E-9	(WARS)	0.05624	NR unit increase	Illumina [1671387] (imputed)	N
803	chr1	28661073	28661074	rs139242087	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1p35.3	MED18	rs139242087-T		3E-6	(AA)	8.55	[1.30-56.03]	Affymetrix, Illumina [NR] (imputed)	N
803	chr1	28675030	28675031	rs188618085	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	1p35.3	NR	rs188618085-C		7E-7		0.9656	[0.58-1.35] SD units increase	NR [10700000] (imputed)	N
803	chr1	28691733	28691734	rs4908404	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1p35.3	PHACTR4	rs4908404-C	0.46988300000000005	3E-8		0.01705	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
804	chr1	28707055	28707056	rs144085046	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs144085046-A	0.0122	2E-10	(FKBP1A)	0.03318	NR unit increase	Illumina [1671387] (imputed)	N
804	chr1	28707055	28707056	rs144085046	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs144085046-A	0.0122	1E-8	(PKM)	0.4932	NR unit increase	Illumina [1671387] (imputed)	N
804	chr1	28708528	28708529	rs12127928	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.3		rs12127928-T	0.8057	2E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
804	chr1	28717870	28717871	rs61783804	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	1p35.3		rs61783804-T	NR	9E-10	(EA)	0.94	NR	Affymetrix [~ 79000000] (imputed)	N
804	chr1	28730816	28730817	rs60781079	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p35.3		rs60781079-A	0.31	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
804	chr1	28734371	28734372	rs143167197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p35.3		rs143167197-G	NR	3E-9		0.0212	[0.014-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
804	chr1	28734371	28734372	rs143167197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p35.3		rs143167197-G	NR	1E-8		0.0198	[0.013-0.027] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
804	chr1	28734371	28734372	rs143167197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p35.3		rs143167197-?	NR	3E-8				NR [~ 8900000] (imputed)	N
804	chr1	28734371	28734372	rs143167197	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p35.3	PHACTR4	rs143167197-A	0.9273	7E-18		0.3016	[0.23-0.37] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
804	chr1	28749183	28749184	rs114145653	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	1p35.3	PHACTR4	rs114145653-?	NR	7E-8		1.89	[1.22-2.56] uM decrease	Affymetrix [9432837] (imputed)	N
804	chr1	28793148	28793149	rs61748637	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p35.3	PHACTR4	rs61748637-C	0.9302	2E-11		0.2793	[0.2-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
804	chr1	28800379	28800380	rs61785974	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p35.3		rs61785974-A	0.2866	1E-10		0.15341738	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
804	chr1	28800379	28800380	rs61785974	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p35.3		rs61785974-A	0.2867	6E-12		0.11929737	[0.085-0.153] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
805	chr1	28837442	28837443	rs6689862	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p35.3	RCC1	rs6689862-T	0.9147	3E-10		0.3273	[0.23-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
805	chr1	28840939	28840940	rs56272623	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p35.3	RCC1, snoU13, SNHG3, SNORA73B, SNORA73A, PRDX3P2	rs56272623-T	NR	2E-6	(resting duration, weekdays)	0.7624	[0.45-1.08] unit increase	Affymetrix [7141204] (imputed)	N
805	chr1	28867537	28867538	rs10915222	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p35.3	Intergenic	rs10915222-T	0.6849	2E-10	(MTAG)	0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
805	chr1	28959461	28959462	rs144050412	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	1p35.3	TAF12	rs144050412-A	0.016	4E-6		1.88	[1.33-2.66]	Affymetrix, Illumina [12148595] (imputed)	N
806	chr1	28971715	28971715	rs375753790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p35.3		rs375753790-AT	NR	2E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
806	chr1	28975556	28975557	rs9426392	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p35.3	NR	rs9426392-G	0.278	8E-8		0.00645498	[0.0041-0.0088] unit increase	NR [9732723] (imputed)	N
806	chr1	28990696	28990697	rs373520633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p35.3	NR	rs373520633-D	0.477338	3E-11		0.014671	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
806	chr1	28990699	28990700	rs781429397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1p35.3	GMEB1	rs781429397-C	0.47863	4E-9		0.013533545	[0.009-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
806	chr1	29024955	29024956	rs10915188	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p35.3	NR	rs10915188-G	0.4153	4E-10		0.029	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
806	chr1	29053021	29053022	rs10915189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs10915189-T	0.475928	2E-9				Affymetrix, Illumina [19905671] (imputed)	N
806	chr1	29060897	29060898	rs3753693	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p35.3	NR	rs3753693-C	0.549	1E-10		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
806	chr1	29070855	29070856	rs17340752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.3		rs17340752-?	NR	2E-11				NR [~ 8900000] (imputed)	N
806	chr1	29087640	29087641	rs34055072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p35.3		rs34055072-A	NR	3E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
807	chr1	29114875	29114876	rs7525656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p35.3		rs7525656-?	NR	1E-8				NR [~ 8900000] (imputed)	N
807	chr1	29141154	29141155	rs533123	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p35.3	NR	rs533123-?	NR	2E-8		1.08264	[1.05-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
807	chr1	29141154	29141155	rs533123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p35.3	Intergenic	rs533123-A	0.809	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
807	chr1	29141154	29141155	rs533123	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p35.3	NR	rs533123-A	NR	2E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
807	chr1	29141966	29141967	rs525672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p35.3	NR	rs525672-G	NR	2E-10		0.0246	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr1	29155737	29155738	rs590013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.3		rs590013-T	0.6772	2E-11		0.01	[0.0071-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
807	chr1	29164581	29164582	rs10753331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.3		rs10753331-A	0.3236	2E-11	(conditional-joint)	0.01	[0.0071-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
807	chr1	29192137	29192138	rs988957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p35.3	RP1-212P9.2	rs988957-G	0.556095	1E-24		0.0236373	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
807	chr1	29192721	29192722	rs204073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p35.3	RP1-212P9.2	rs204073-T	0.067871	3E-9		0.02644203	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr1	29192721	29192722	rs204073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p35.3	RP1-212P9.2	rs204073-T	0.067872	2E-56		0.06981838	[0.061-0.078] unit increase	Affymetrix [93095623] (imputed)	N
807	chr1	29194636	29194637	rs204070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p35.3	NR	rs204070-G	0.901909	4E-10		0.039263	[0.027-0.052] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
807	chr1	29194912	29194913	rs204068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs204068-G	0.079744	6E-23				Affymetrix, Illumina [24588908] (imputed)	N
807	chr1	29200218	29200219	rs7511894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p35.3		rs7511894-C	NR	7E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
807	chr1	29201896	29201897	rs79847479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs79847479-C	0.92714	5E-73				Affymetrix, Illumina [17210439] (imputed)	N
807	chr1	29201896	29201897	rs79847479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p35.3	NR	rs79847479-C	0.932013	7E-73		0.068197	[0.061-0.076] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
807	chr1	29203906	29203907	rs157198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p35.3	NR	rs157198-C	0.075091	5E-19		0.030816	[0.024-0.038] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
807	chr1	29203906	29203907	rs157198	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p35.3	RP1-212P9.3	rs157198-C	0.074	5E-19		0.06131747	[0.048-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
807	chr1	29217310	29217311	rs115820925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p35.3	EPB41	rs115820925-A	0.00758899999999996	5E-12		0.09065205	[0.065-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr1	29219157	29219158	rs185682149	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	1p35.3	NR	rs185682149-C		3E-6		0.9435	[0.55-1.34] SD units increase	NR [10700000] (imputed)	N
807	chr1	29223337	29223337	rs142711513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p35.3	EPB41	rs142711513-CAGTG	0.693269	6E-16		0.019673852	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
807	chr1	29226943	29226943	rs779672112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p35.3	NR	rs779672112-D	0.557068	4E-26		0.02232	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
808	chr1	29232330	29232332	rs573552880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p35.3	EPB41	rs573552880-C	0.106607	4E-10		0.02441714	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
808	chr1	29232330	29232332	rs573552880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p35.3	EPB41	rs573552880-C	0.106621	1E-13		0.029383866	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
808	chr1	29243759	29243760	rs149932	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	HDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p35.3	EPB41	rs149932-G	NR	4E-7		0.21263	[0.13-0.29] unit decrease	Illumina [NR] (imputed)	N
808	chr1	29272775	29272776	rs56906456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p35.3		rs56906456-?	NR	6E-8				NR [~ 8900000] (imputed)	N
808	chr1	29293082	29293083	rs2930841	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.3	NR	rs2930841-?	NR	3E-6		4.676	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
808	chr1	29320012	29320013	rs111642750	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p35.3	EPB41	rs111642750-A		1E-9		0.029	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
808	chr1	29320012	29320013	rs111642750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p35.3	NR	rs111642750-A	0.050683000000000034	8E-10		0.0111051	[0.0074-0.0148] unit increase	Affymetrix [16582909] (imputed)	N
808	chr1	29320012	29320013	rs111642750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p35.3	NR	rs111642750-A	0.050683000000000034	1E-7		0.0107007	[0.0066-0.0148] unit increase	Affymetrix [16582965] (imputed)	N
808	chr1	29345026	29345027	rs2985334	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1p35.3	EPB41	rs2985334-?		6E-6				Illumina [859311]	N
808	chr1	29356662	29356663	rs10915216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs10915216-A	0.488926	2E-22				Affymetrix, Illumina [21126107] (imputed)	N
809	chr1	29416639	29416640	rs10915225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p35.3		rs10915225-T	NR	8E-14		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.499172	6E-25		0.02286579	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.499158	9E-24		0.022297338	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.499192	4E-77		0.0421344	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.49911	7E-74		0.041786794	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.499206	7E-11		0.014402191	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p35.3	EPB41	rs10915225-T	0.499188	2E-11		0.014768507	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29416639	29416640	rs10915225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs10915225-T	0.489179	1E-18				Affymetrix, Illumina [24246363] (imputed)	N
809	chr1	29426877	29426878	rs543356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p35.3	EPB41	rs543356-G	0.788476	1E-11		0.0197963	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29445226	29445227	rs12120422	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		1p35.3	NR	rs12120422-C	NR	2E-6		1.12867	[1.07358-1.18658]	Affymetrix [5734850] (imputed)	N
809	chr1	29457777	29457778	rs12403568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p35.3	NR	rs12403568-T	0.494738	1E-19		0.016419	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
809	chr1	29461579	29461580	rs2493847	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.3	NR	rs2493847-?	NR	2E-6		4.77	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
809	chr1	29486127	29486128	rs113292219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p35.3		rs113292219-T	NR	2E-10		0.0267	[0.018-0.035] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
809	chr1	29486127	29486128	rs113292219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p35.3		rs113292219-T	NR	3E-10		0.0271	[0.019-0.036] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p35.3	SRSF4	rs113292219-T	0.053762	1E-12		0.034571856	[0.025-0.044] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p35.3	SRSF4	rs113292219-T	0.0537530000000001	2E-14		0.03736744	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs113292219-T	0.049936	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p35.3	NR	rs113292219-T	0.051581	6E-14		0.031421	[0.023-0.04] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.3	NR	rs113292219-T	0.0499628	4E-12				Affymetrix, Illumina [24558453] (imputed)	N
809	chr1	29486127	29486128	rs113292219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p35.3	NR	rs113292219-T	0.051614	1E-14		0.032464	[0.024-0.041] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
810	chr1	29517351	29517352	rs115423512	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.3	NR	rs115423512-T	0.02091	8E-9	(S100A4)	0.07706	NR unit increase	Illumina [1671387] (imputed)	N
810	chr1	29521704	29521705	rs12738007	26531332	Kim LH	2015-11-14	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study with the risk of schizophrenia in a Korean population.	Schizophrenia	350 Korean ancestry cases, 700 Korean ancestry controls	310 Korean ancestry cases, 604 Korean ancestry controls	1p35.3	MECR, SRSF4	rs12738007-?	0.056	2E-6		1.9	[1.44-2.46]	Illumina [620001]	N
810	chr1	29549215	29549216	rs1565716	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p35.3	MECR	rs1565716-A	0.0696	1E-11		0.2012	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
810	chr1	29550990	29550991	rs2291609	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p35.3	MECR	rs2291609-?	NR	2E-8		0.0158	[0.011-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
810	chr1	29566551	29566552	rs2452774	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.3	NR	rs2452774-?	NR	2E-6		4.717	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
810	chr1	29567411	29567412	rs4654395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p35.3	PTPRU	rs4654395-T	0.525691	6E-16		0.0184091	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
810	chr1	29567411	29567412	rs4654395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p35.3	PTPRU	rs4654395-C	0.475033	2E-10		0.0121325	[0.0084-0.0159] unit increase	Affymetrix [NR] (imputed)	N
810	chr1	29567411	29567412	rs4654395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p35.3	PTPRU	rs4654395-C	0.474982	4E-10		0.0122927	[0.0084-0.0162] unit increase	Affymetrix [NR] (imputed)	N
810	chr1	29576783	29576784	rs6670211	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	1p35.3	MECR, OPRD1, EPB41, PTPRU, SRSF4, TMEM200B	rs6670211-C	0.5347	2E-6		1.1276096		Illumina [8265319] (imputed)	N
810	chr1	29596083	29596084	rs6687475	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p35.3	PTPRU	rs6687475-C	0.7436	6E-12		0.0148	[0.01-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
811	chr1	29626142	29626143	rs74897733	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p35.3	PTPRU	rs74897733-A	0.128513632922088	4E-6	(G_Prevotella_RNT)	0.205974	[0.12-0.29] unit decrease	Illumina [7711310] (imputed)	N
811	chr1	29631236	29631236	rs3831903	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	1p35.3	PTPRU, MECR, SRSF4, TMEM200B	rs3831903-CTA	0.408882	5E-7	(men)	0.14237	[0.088-0.197] mm2 increase	Affymetrix [532676] (imputed)	N
811	chr1	29631236	29631236	rs3831903	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	1p35.3	PTPRU, MECR, SRSF4, TMEM200B	rs3831903-CTA	0.408882	1E-6	(men)	0.176864	[0.11-0.25] mm2 increase	Affymetrix [532676] (imputed)	N
811	chr1	29639816	29639817	rs10737387	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRU	5,362 Icelandic ancestry individuals	NA	1p35.3		rs10737387-T	0.2782	6E-18		0.180987	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
811	chr1	29642317	29642318	rs2179795	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p35.3	PTPRU	rs2179795-G	0.7246875	4E-8	(PTPRU, 8337_65_3)	0.15386468	[0.099-0.209] unit increase	Illumina [> 1000000] (imputed)	N
811	chr1	29662920	29662921	rs115574594	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p35.3	RP3-437I16.1	rs115574594-T	0.9963	6E-6		0.5769	[0.33-0.83] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
811	chr1	29685026	29685027	rs79914264	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	1p35.3	RP3-437I16.1	rs79914264-?	NR	7E-6		0.479	[0.26-0.69] unit decrease	Illumina [6319684] (imputed)	N
811	chr1	29718864	29718865	rs742801	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	1p35.3	LOC101928460, LOC101929406	rs742801-G	0.51	4E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
812	chr1	29755817	29755818	rs16838233	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1p35.3	PTPRU, MATN1	rs16838233-?	NR	4E-6		5.346	unit increase (EA, Australian cohort)	Illumina [610255]	N
812	chr1	29766240	29766241	rs6702829	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	1p35.3		rs6702829-C	0.232	2E-6		0.6		Illumina [5411567] (imputed)	N
812	chr1	29870453	29870454	rs7418865	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p35.3	NR	rs7418865-?	NR	5E-32				Affymetrix [NR]	N
814	chr1	30066050	30066051	rs7544811	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1p35.3		rs7544811-?	NR	5E-9		0.5	[0.33-0.67] unit decrease	Affymetrix [NR] (imputed)	N
814	chr1	30088754	30088755	rs9661242	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	1p35.3	NR	rs9661242-?	0.48	2E-6		1.1111112	[1.06-1.16]	Illumina [~ 1113287] (imputed)	N
815	chr1	30157098	30157099	rs116050881	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p35.3	Intergenic	rs116050881-T	0.026	6E-7	(liability model)	0.25	[0.15-0.35] unit increase	NR [19725427] (imputed)	N
815	chr1	30170342	30170343	rs4949493	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	1p35.3	LINC01756, LINC01648	rs4949493-A	0.5944	1E-5		0.1398	[0.078-0.202] unit increase	NR [NR] (imputed)	N
815	chr1	30238074	30238075	rs147830437	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	1p35.3	LINC01648	rs147830437-T	0.223	3E-6		2.36	[1.65-3.38]	Illumina [7759885] (imputed)	N
815	chr1	30265651	30265652	rs6691847	23535911	Kitamoto T	2013-03-28	Hum Genet	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Pediatric non-alcoholic fatty liver disease activity score	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	1p35.3	PTPRU	rs6691847-C	0.77	7E-6		1.32	[0.98-1.77]	Illumina [261540]	N
816	chr1	30315968	30315969	rs55950243	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	1p35.3	NR	rs55950243-G		2E-6		0.2197	[0.13-0.31] unit increase	Illumina [12764477] (imputed)	N
816	chr1	30330966	30330967	rs6669972	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	1p35.3	RP11-111l12.1	rs6669972-C	0.91	3E-6		1.5625		Affymetrix [at least 730985] (imputed)	N
817	chr1	30426013	30426014	rs12407717	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	1p35.2	MATN1	rs12407717-T	0.13	2E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
817	chr1	30428942	30428943	rs2015244	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p35.2	ENSG00000270927	rs2015244-?	NR	3E-9		0.013036855	[0.0087-0.0174] unit decrease	NR [7306098]	N
817	chr1	30428942	30428943	rs2015244	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p35.2	MATN1	rs2015244-A	NR	1E-9	(EA)	1.0741138	[1.05-1.1]	Illumina [6627481] (imputed)	N
817	chr1	30431559	30431560	rs1009080	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p35.2	NR	rs1009080-?	NR	3E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [1252901] (imputed)	N
817	chr1	30432218	30432219	rs4949526	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p35.2	MATN1	rs4949526-T	NR	6E-11		1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
817	chr1	30432218	30432219	rs4949526	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p35.2	MATN1, PTPRU	rs4949526-T	NR	3E-10		1.065	[1.05-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
817	chr1	30432218	30432219	rs4949526	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p35.2	PTPRU	rs4949526-?	NR	4E-7		1.2805	[NR]	Affymetrix [722112]	N
817	chr1	30433950	30433951	rs1498232	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1p35.2	NR	rs1498232-?	NR	1E-9				Illumina [up to 5582932] (imputed)	N
817	chr1	30433950	30433951	rs1498232	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p35.2	LOC101929406	rs1498232-T		5E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
817	chr1	30433950	30433951	rs1498232	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p35.2	NR	rs1498232-T	NR	7E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
817	chr1	30433950	30433951	rs1498232	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1p35.2	intergenic	rs1498232-T	0.296	3E-9		1.069	[1.046-1.093]	Affymetrix, Illumina [9005918] (imputed)	N
817	chr1	30437267	30437268	rs6694545	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6694545-?	NR	2E-10				NR [2625067]	N
817	chr1	30437267	30437268	rs6694545	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs6694545-?	NR	1E-8				NR [2625067]	N
817	chr1	30437267	30437268	rs6694545	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs6694545-A	0.2386	1E-9		0.07726217	[0.052-0.102] unit increase	NR [NR]	N
817	chr1	30437267	30437268	rs6694545	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs6694545-?		1E-8				NR [8377093]	N
817	chr1	30437267	30437268	rs6694545	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		Intergenic	rs6694545-?		4E-9				NR [6786993] (imputed)	N
817	chr1	30437267	30437268	rs6694545	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs6694545-?	NR	8E-14		1.07918	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
817	chr1	30437267	30437268	rs6694545	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		LOC101929406	rs6694545-?	NR	6E-12		1.08	[1.06-1.1]	Illumina [8000000] (imputed)	N
817	chr1	30437267	30437268	rs6694545	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA		intergenic	rs6694545-A		1E-6	(Modelling analysis)	1.07	[1.04-1.11]	NR [1252901] (imputed)	N
817	chr1	30438471	30438472	rs184707950	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p35.2	RP11-111I12.1	rs184707950-A	0.0022	8E-6		0.3641	[0.2-0.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr1	30465851	30465852	rs267689	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p35.2	NR	rs267689-?	NR	8E-12				Affymetrix [NR]	N
817	chr1	30525414	30525415	rs430788	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	1p35.2	NR	rs430788-G	0.2562	3E-6		0.1631	[0.095-0.231] unit decrease	Illumina [10677593] (imputed)	N
817	chr1	30525713	30525714	rs2860031	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	1p35.2	intergenic	rs2860031-?	NR	3E-6		1.22	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
817	chr1	30537231	30537232	rs867720	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	1p35.2	NR	rs867720-C	0.2573	5E-6		1.23	[1.14-1.35]	Illumina [64973696] (imputed)	N
818	chr1	30567595	30567596	rs910696	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	1p35.2	intergenic	rs910696-?	0.31	3E-6	(CPD)	0.08	[NR] cigarettes per day increase	Illumina [~ 518000]	N
818	chr1	30570546	30570547	rs114322830	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p35.2	NR	rs114322830-?	NR	2E-8				Illumina [7760689] (imputed)	N
818	chr1	30623640	30623641	rs2761067	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	1p35.2	NR	rs2761067-A	0.28	3E-6		0.207	[0.12-0.29] unit increase	Illumina [5418572] (imputed)	N
818	chr1	30627711	30627712	rs2180233	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1p35.2	intergenic	rs2180233-C	0.31	9E-6				Perlegen [378332]	N
819	chr1	30687826	30687827	rs16833405	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p35.2	intergenic	rs16833405-G	0.173029686293775	8E-7	(O_Rhodospirillales_HB)	0.36814	[0.22-0.51] unit increase	Illumina [7711310] (imputed)	N
820	chr1	30901572	30901573	rs592395	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High physical stress	8,104 Korean ancestry individuals	NA	1p35.2		rs592395-A	NR	7E-6		1.31	[1.16-1.47]	Affymetrix [320700]	N
820	chr1	30923202	30923203	rs454774	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p35.2	NR	rs454774-?	NR	4E-21				Affymetrix [NR]	N
820	chr1	30925951	30925952	rs667153	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	1p35.2	NR	rs667153-?		4E-6		80.91	[42.55-119.27] unit decrease	Illumina [498648]	N
821	chr1	31023290	31023291	rs3104434	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	1p35.2	intergenic	rs3104434-G	0.208	5E-6		1.015	[0.59-1.44] unit decrease	Illumina [622468]	N
821	chr1	31045508	31045509	rs3104435	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	1p35.2	MATN1	rs3104435-G	NR	3E-9		1.38	[1.15-1.66]	Affymetrix [~ 8000000] (imputed)	N
822	chr1	31074462	31074463	rs567927502	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p35.2	LINC01648, MATN1	rs567927502-?		3E-11		2.1059	[1.48-2.73] unit decrease	Illumina [31500000] (imputed)	N
822	chr1	31086099	31086100	rs1188378	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p35.2	NR	rs1188378-?	NR	7E-6		7342.882	NR unit decrease	Illumina [2379855]	N
822	chr1	31114984	31114985	rs143345612	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	1p35.2	NR	rs143345612-?	NR	3E-6		0.1066	[0.062-0.152] unit decrease	Illumina [at least 560000] (imputed)	N
822	chr1	31167491	31167492	rs1535770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p35.2	NR	rs1535770-G	0.358572	4E-11		0.01297	[0.0091-0.0168] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
822	chr1	31177274	31177275	rs1149025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p35.2		rs1149025-C	NR	4E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
822	chr1	31177887	31177888	rs1149031	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Xanthine levels	1,937 individuals	NA	1p35.2	intergenic	rs1149031-T	0.325	3E-7		0.1999	[0.12-0.28] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
822	chr1	31183811	31183812	rs7555715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p35.2	MATN1	rs7555715-A	0.360402	8E-10		0.014072234	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
822	chr1	31184217	31184218	rs1188394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p35.2		rs1188394-A	NR	3E-12		0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
822	chr1	31184856	31184857	rs1188401	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p35.2	NR	rs1188401-?	NR	9E-6				Affymetrix [NR]	N
823	chr1	31198732	31198733	rs1149048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.2		rs1149048-?	NR	6E-13				NR [~ 8900000] (imputed)	N
823	chr1	31211893	31211894	rs34101571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p35.2		rs34101571-A	NR	3E-8		0.0658	[0.042-0.089] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
823	chr1	31211893	31211894	rs34101571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p35.2		rs34101571-A	0.02435	2E-11		0.5359	[0.38-0.69] unit decrease	Illumina [18238311] (imputed)	N
823	chr1	31211893	31211894	rs34101571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p35.2		rs34101571-A	0.02435	1E-11		0.534	[0.38-0.69] unit decrease	Illumina [18238311] (imputed)	N
823	chr1	31211893	31211894	rs34101571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p35.2		rs34101571-A	0.02435	1E-8		0.4501	[0.29-0.61] unit decrease	Illumina [18238311] (imputed)	N
823	chr1	31224192	31224193	rs7549164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs7549164-T	0.239067	1E-23				Affymetrix, Illumina [24649327] (imputed)	N
823	chr1	31230667	31230668	rs2273979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs2273979-T	0.187163	5E-20				Affymetrix, Illumina [23114412] (imputed)	N
823	chr1	31231679	31231680	rs3762297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p35.2		rs3762297-T	NR	1E-15		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
823	chr1	31231679	31231680	rs3762297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p35.2		rs3762297-T	NR	5E-17		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
823	chr1	31231679	31231680	rs3762297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p35.2	LAPTM5	rs3762297-T	0.182725	7E-20		0.025993893	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
823	chr1	31231679	31231680	rs3762297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p35.2	LAPTM5	rs3762297-T	0.182756	1E-18		0.025156537	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
823	chr1	31231679	31231680	rs3762297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p35.2	NR	rs3762297-T	0.18332	1E-24		0.024844	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
823	chr1	31231679	31231680	rs3762297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p35.2	NR	rs3762297-T	0.183345	3E-21		0.023896	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
823	chr1	31231679	31231680	rs3762297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p35.2		rs3762297-?	NR	1E-22				NR [~ 8900000] (imputed)	N
823	chr1	31241885	31241886	rs74340846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p35.2		rs74340846-T	0.00752600000000003	2E-27		0.16194557	[0.13-0.19] unit increase	Affymetrix [93095623] (imputed)	N
823	chr1	31241885	31241886	rs74340846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p35.2		rs74340846-T	0.00752399999999998	1E-21		0.14225937	[0.11-0.17] unit increase	Affymetrix [93095623] (imputed)	N
823	chr1	31241885	31241886	rs74340846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs74340846-T	0.00760603	1E-20				Affymetrix, Illumina [24588908] (imputed)	N
823	chr1	31241885	31241886	rs74340846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p35.2	NR	rs74340846-T	0.007758	1E-23		0.124081	[0.1-0.148] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
823	chr1	31241885	31241886	rs74340846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p35.2	intergenic	rs74340846-T	0.0105	4E-15		0.1631896	[0.12-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr1	31241885	31241886	rs74340846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p35.2	intergenic	rs74340846-T	0.0105	1E-13		0.1541059	[0.11-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr1	31251722	31251723	rs76554764	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	1p35.2	LAPTM5	rs76554764-?		9E-7	(EA)	0.536	[0.32-0.75] unit increase	Illumina [7205781] (imputed)	N
823	chr1	31251722	31251723	rs76554764	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	1p35.2	LAPTM5, SDC3	rs76554764-?	NR	2E-6	(EA)	0.192	[0.11-0.27] unit increase	Illumina [7176022] (imputed)	N
823	chr1	31254230	31254231	rs10798808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p35.2		rs10798808-C	NR	4E-8		0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
823	chr1	31263359	31263360	rs7530117	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p35.2	NR	rs7530117-T	0.369459	1E-9		0.0177946	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
823	chr1	31264977	31264978	rs10914206	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Hydrogenophaga abundance in stool	5,959 Finnish ancestry individuals	NA	1p35.2		rs10914206-C	0.284171	2E-8		0.0268024	[0.017-0.036] unit decrease	Illumina [7980478] (imputed)	N
823	chr1	31292640	31292641	rs16834081	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p35.2		rs16834081-C	0.09187556	2E-9				Illumina [7417619] (imputed)	N
823	chr1	31304624	31304625	rs35772196	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		1p35.2	RP1-65J11.1	rs35772196-G	0.185337	9E-6		0.478053	[0.27-0.69] unit increase	Illumina [640625] (imputed)	N
823	chr1	31315592	31315593	rs4949316	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1p35.2	intergenic	rs4949316-G	NR	9E-6		0.2127	unit increase	Illumina [5767231] (imputed)	N
823	chr1	31318132	31318133	rs7516534	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Alpha electroencephalogram power	191 European ancestry individuals	NA	1p35.2	NR	rs7516534-?	NR	3E-6		0.08	NR unit decrease	Affymetrix [388620]	N
823	chr1	31322766	31322767	rs2491141	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1p35.2		rs2491141-T	NR	4E-6		0.86163	[0.51-1.22] unit increase	Illumina [NR] (imputed)	N
824	chr1	31330843	31330844	rs3935266	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p35.2	NR	rs3935266-?		4E-6				Illumina [4322238] (imputed)	N
824	chr1	31334214	31334215	rs79719407	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	1p35.2	NR	rs79719407-G	0.02293	4E-6		0.4738	[0.27-0.67] unit increase	Illumina [10677593] (imputed)	N
824	chr1	31353290	31353291	rs149802540	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1p35.2	SDC3	rs149802540-C	0.02	7E-7	(African American)	1.34	[0.81-1.87] unit decrease	Illumina [up to 13042663] (imputed)	N
824	chr1	31377742	31377743	rs4949324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p35.2		rs4949324-?	NR	8E-9				NR [~ 8900000] (imputed)	N
824	chr1	31388558	31388559	rs10914232	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p35.2	NR	rs10914232-T	NR	9E-6	(male)	0.1425	[0.08-0.205] unit decrease	Illumina [11133794] (imputed)	N
824	chr1	31407313	31407314	rs72657272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p35.2	PUM1	rs72657272-T	NR	1E-21		0.0377754	[0.03-0.046] unit increase	Affymetrix [321016] (imputed)	N
824	chr1	31449765	31449766	rs4949330	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	1p35.2	Intergenic	rs4949330-?		4E-6		1.802	[NR]	Affymetrix [492217] (imputed)	N
825	chr1	31461437	31461438	rs947643	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p35.2	NR	rs947643-G	0.751519	2E-8		0.00488304	[0.003-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
825	chr1	31461437	31461438	rs947643	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p35.2	NR	rs947643-G	0.751519	7E-13		0.00715063	[0.005-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
825	chr1	31469061	31469062	rs72657297	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p35.2	PUM1	rs72657297-T	NR	4E-21		0.0333188	[0.026-0.04] unit increase	Affymetrix [321788] (imputed)	N
825	chr1	31492149	31492150	rs4642942	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	1p35.2		rs4642942-C	0.4148	3E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
825	chr1	31569230	31569231	rs10914269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p35.2		rs10914269-?	NR	1E-12				NR [~ 8900000] (imputed)	N
825	chr1	31571776	31571777	rs6425704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p35.2	SEPW1P	rs6425704-A	NR	7E-10		0.0192319	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
825	chr1	31571776	31571777	rs6425704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p35.2	SEPW1P	rs6425704-A	NR	3E-12		0.0209226	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
825	chr1	31572570	31572571	rs6687993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p35.2		rs6687993-C	NR	3E-10		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
825	chr1	31572570	31572571	rs6687993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p35.2		rs6687993-C	NR	3E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
825	chr1	31572570	31572571	rs6687993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p35.2		rs6687993-C	NR	4E-11		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
825	chr1	31572570	31572571	rs6687993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs6687993-C	0.142286	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
825	chr1	31572570	31572571	rs6687993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p35.2	NR	rs6687993-C	0.139922	2E-12		0.019066	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
825	chr1	31572570	31572571	rs6687993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs6687993-C	0.142463	1E-13				Affymetrix, Illumina [24653286] (imputed)	N
825	chr1	31572570	31572571	rs6687993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p35.2	NR	rs6687993-C	0.139806	3E-15		0.021269	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
825	chr1	31572570	31572571	rs6687993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.2	NR	rs6687993-C	0.142395	5E-13				Affymetrix, Illumina [24558453] (imputed)	N
825	chr1	31572570	31572571	rs6687993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p35.2		rs6687993-?	NR	5E-8				NR [~ 8900000] (imputed)	N
825	chr1	31584248	31584249	rs6656986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p35.2	NR	rs6656986-G	0.129773	1E-13		0.02041	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
826	chr1	31594199	31594199	rs371199618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p35.2		rs371199618-CAAA	0.111684	6E-12		0.024922224	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
826	chr1	31594199	31594199	rs371199618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p35.2		rs371199618-CAAA	0.1117	7E-13		0.026074188	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
826	chr1	31667678	31667679	rs35056890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p35.2	NKAIN1	rs35056890-T	NR	1E-12		0.0268538	[0.019-0.034] unit increase	Affymetrix [321788] (imputed)	N
826	chr1	31667678	31667679	rs35056890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p35.2	NKAIN1	rs35056890-T	NR	5E-11		0.0237857	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
826	chr1	31672891	31672892	rs2377722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p35.2		rs2377722-G	NR	2E-8		0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
826	chr1	31690406	31690407	rs12748874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p35.2	NR	rs12748874-A	NR	3E-9		0.0196	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
826	chr1	31701980	31701981	rs1107427	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		1p35.2	NR	rs1107427-G	0.249427	6E-6		1.0886	[1.05493-1.12336]	Affymetrix [16499239] (imputed)	N
827	chr1	31722165	31722166	rs7549339	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Body mass index	up to 33,431 European ancestry individuals	NA	1p35.2	SNRNP40, ZCCHC17, NKAIN1	rs7549339-A	0.218	9E-6		0.77	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
827	chr1	31802941	31802942	rs115552871	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.2	NR	rs115552871-T	0.02265	6E-10	(CNN2)	0.01339	NR unit increase	Illumina [1671387] (imputed)	N
827	chr1	31802941	31802942	rs115552871	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.2	NR	rs115552871-T	0.02265	1E-8	(CAPN2)	0.03674	NR unit increase	Illumina [1671387] (imputed)	N
827	chr1	31831869	31831870	rs7551345	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p35.2	NR	rs7551345-A	NR	4E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
828	chr1	31858066	31858067	rs12563669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p35.2		rs12563669-A	0.378254	6E-9		0.013276832	[0.0088-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
828	chr1	31858900	31858901	rs12122236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p35.2		rs12122236-C	NR	2E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
828	chr1	31862771	31862772	rs148297606	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	1p35.2	NR	rs148297606-C	NR	4E-6				Illumina [10806625] (imputed)	N
828	chr1	31883924	31883925	rs4478858	23455491	Zuo L	2013-02-27	Drug Alcohol Depend	NKAIN1-SERINC2 is a functional, replicable and genome-wide significant risk gene region specific for alcohol dependence in subjects of European descent.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls	6,438 European ancestry individuals from 1,645 affected families	1p35.2	NKAIN1, SNRNP40, ZCCHC17, FABP3, SERINC2	rs4478858-G	NR	3E-8		1.26		Illumina [805814]	N
828	chr1	31894395	31894396	rs11589125	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p35.2	SERINC2	rs11589125-C	0.944699	7E-9		0.0745311	[0.049-0.1] unit decrease	Affymetrix [509255] (imputed)	N
828	chr1	31898462	31898463	rs2275436	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p35.2	TINAGL1	rs2275436-C	0.49359375	2E-6	(TINAGL1, 11192_168_3)	0.11254961	[0.066-0.159] unit increase	Illumina [> 1000000] (imputed)	N
828	chr1	31970117	31970118	rs11809589	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p35.2	FABP3, SERINC2, TINAGL1	rs11809589-?		8E-10	(African)			Affymetrix, Illumina [18800000] (imputed)	N
828	chr1	31970117	31970118	rs11809589	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p35.2	FABP3, SERINC2, TINAGL1	rs11809589-A	0.012	2E-7	(African)	18.04	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
828	chr1	31970117	31970118	rs11809589	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p35.2	FABP3, SERINC2, TINAGL1	rs11809589-?	NR	8E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
829	chr1	32047631	32047632	rs945213	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	TINAGL1	rs945213-T	NR	9E-9		0.018296845	[0.012-0.025] unit increase	Affymetrix [NR]	N
829	chr1	32061850	32061851	rs7518151	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p35.2	NR	rs7518151-T	NR	1E-8		5.726	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
829	chr1	32061850	32061851	rs7518151	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	TINAGL1	rs7518151-T	NR	1E-9		6.105	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr1	32062065	32062066	rs4949448	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p35.2	NR	rs4949448-T	NR	1E-8		5.683	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
829	chr1	32062065	32062066	rs4949448	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	TINAGL1	rs4949448-T	NR	2E-9		0.017660322	[0.012-0.023] unit increase	Affymetrix [NR]	N
829	chr1	32085636	32085637	rs10914455	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	1p35.2	HCRTR1	rs10914455-G	0.086	6E-6		0.369	[NR] unit increase	Illumina [625127]	N
829	chr1	32091778	32091779	rs6663012	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p35.2	HCRTR1	rs6663012-T		1E-8		0.0062	[0.004-0.0084] unit increase	Affymetrix [13304133] (imputed)	N
829	chr1	32092524	32092525	rs2271933	34050200	Choi JW	2021-05-28	Sci Rep	Genetically determined hypoalbuminemia as a risk factor for hypertension: instrumental variable analysis.	Hypoalbuminemia	1,168 East Asian ancestry cases, 3,157 East Asian ancestry controls	NA		HCRTR1	rs2271933-C	0.58	1E-6	(dominant)	0.7		Affymetrix [519364]	N
829	chr1	32093560	32093561	rs6703093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p35.2		rs6703093-?	NR	7E-10				NR [~ 8900000] (imputed)	N
829	chr1	32094260	32094261	rs10914457	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	HCRTR1	rs10914457-A	NR	2E-8		5.659	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr1	32096814	32096815	rs10798879	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	HCRTR1, PEF1	rs10798879-T	NR	6E-15		7.797	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr1	32097087	32097088	rs10798880	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p35.2	Intergenic	rs10798880-T	0.6269	9E-13	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
829	chr1	32097087	32097088	rs10798880	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p35.2	HCRTR1, PEF1	rs10798880-?	NR	8E-10		6.143	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
829	chr1	32097087	32097088	rs10798880	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p35.2	HCRTR1, PEF1	rs10798880-?	NR	5E-8		5.457	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
829	chr1	32099040	32099041	rs4949454	34050200	Choi JW	2021-05-28	Sci Rep	Genetically determined hypoalbuminemia as a risk factor for hypertension: instrumental variable analysis.	Hypoalbuminemia	1,168 East Asian ancestry cases, 3,157 East Asian ancestry controls	NA		PEF1	rs4949454-A	0.56	7E-7	(dominant)	0.7		Affymetrix [519364]	N
829	chr1	32099040	32099041	rs4949454	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA		PEF1	rs4949454-A	NR	2E-13		0.021438975	[0.016-0.027] unit increase	Affymetrix [NR]	N
829	chr1	32106493	32106494	rs7546297	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p35.2	NR	rs7546297-A	0.348907	7E-13		0.047389805	[0.034-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
829	chr1	32106493	32106494	rs7546297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p35.2	Intergenic	rs7546297-A	0.3675	5E-13		0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
829	chr1	32106493	32106494	rs7546297	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p35.2	NR	rs7546297-A	NR	1E-12		7.091	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
829	chr1	32108546	32108547	rs10798882	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p35.2	PEF1	rs10798882-?	NR	3E-8		5.535	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
830	chr1	32120422	32120423	rs200496074	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1p35.2		rs200496074-?	NR	1E-10		0.0649139	[0.045-0.084] unit increase	NR [9800000] (imputed)	N
830	chr1	32125942	32125943	rs10914462	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	COL16A1	rs10914462-A	NR	5E-11		6.573	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
830	chr1	32126134	32126135	rs41263967	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	COL16A1	rs41263967-T	NR	8E-10		0.028408155	[0.019-0.037] unit decrease	Affymetrix [NR]	N
830	chr1	32127952	32127953	rs2271928	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p35.2	NR	rs2271928-G	NR	7E-6		0.012	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
830	chr1	32127952	32127953	rs2271928	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	COL16A1	rs2271928-A	NR	2E-13		0.021722095	[0.016-0.028] unit decrease	Affymetrix [NR]	N
830	chr1	32127952	32127953	rs2271928	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p35.2	NKAIN1, ZCCHC17, LOC149086, PEF1, BAI2, PTP4A2, KHDRBS1, SNRNP40, SERINC2, TINAGL1, MIR4254, TMEM39B, FABP3, LOC284551, COL16A1, SPOCD1, KPNA6, HCRTR1	rs2271928-A	0.406437490486814	9E-10		0.017041538	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
830	chr1	32135772	32135773	rs2292989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.2		rs2292989-?	NR	1E-19				NR [~ 8900000] (imputed)	N
830	chr1	32135772	32135773	rs2292989	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	COL16A1	rs2292989-A	NR	1E-14		0.023429701	[0.017-0.029] unit increase	Affymetrix [NR]	N
830	chr1	32139634	32139635	rs909002	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	COL16A1	rs909002-T	NR	3E-12		0.020523496	[0.015-0.026] unit increase	Affymetrix [NR]	N
830	chr1	32140052	32140053	rs4949457	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p35.2		rs4949457-?	NR	6E-12				NR [7857346] (imputed)	N
830	chr1	32142353	32142354	rs4949459	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p35.2	COL16A1	rs4949459-T	NR	7E-10		0.018040216	[0.012-0.024] unit increase	Affymetrix [NR]	N
830	chr1	32143137	32143138	rs4949460	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	COL16A1	rs4949460-A	NR	7E-9		5.803	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
830	chr1	32152517	32152518	rs4568876	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p35.2	COL16A1	rs4568876-T	0.597	5E-6		0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
830	chr1	32157530	32157531	rs2297676	30087447	Aubart M	2018-08-07	Eur J Hum Genet	Association of modifiers and other genetic factors explain Marfan syndrome clinical variability.	Severe aortic features in Marfan syndrome	51 European ancestry cases, 47 European ancestry controls	NA	1p35.2	COL16A1, PEF1, BAI2	rs2297676-?	NR	9E-6		3.8	[NR]	Illumina [at least 701570] (imputed)	N
830	chr1	32158373	32158374	rs3818788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p35.2		rs3818788-C	NR	7E-12		0.0119	[0.0086-0.0152] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
830	chr1	32165092	32165093	rs6681149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	1p35.2	NR	rs6681149-G	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
830	chr1	32165092	32165093	rs6681149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	1p35.2	NR	rs6681149-G	NR	3E-6				Affymetrix [~ 8270000] (imputed)	N
830	chr1	32165092	32165093	rs6681149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	1p35.2	NR	rs6681149-G	NR	7E-6				Affymetrix [~ 8270000] (imputed)	N
830	chr1	32165092	32165093	rs6681149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	1p35.2	NR	rs6681149-G	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
830	chr1	32165494	32165495	rs2228552	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1p35.2	COL16A1	rs2228552-T	0.63	2E-8				NR [> 9500000] (imputed)	N
830	chr1	32165494	32165495	rs2228552	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1p35.2	COL16A1	rs2228552-T	0.630981	3E-8		1.0350089	[1.02243528738587-1.04773714358246]	NR [9572556] (imputed)	N
830	chr1	32165494	32165495	rs2228552	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1p35.2	COL16A1, ADGRB2, PEF1, MIR4254, HCRTR1, SPOCD1	rs2228552-T	0.64311	3E-8		1.03759	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
830	chr1	32173257	32173258	rs10798886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p35.2		rs10798886-G	NR	2E-11		0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
830	chr1	32178488	32178489	rs4949465	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p35.2		rs4949465-T	0.87	2E-8		0.017	[0.011-0.023] unit decrease	Affymetrix [up to 90000000] (imputed)	N
830	chr1	32178488	32178489	rs4949465	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p35.2	ADGRB2	rs4949465-T	0.8647	4E-10		0.01833924	[0.013-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
830	chr1	32178488	32178489	rs4949465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p35.2		rs4949465-?	NR	3E-8				NR [~ 8900000] (imputed)	N
830	chr1	32179260	32179261	rs7524140	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p35.2		rs7524140-C	0.87	6E-11		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
830	chr1	32191797	32191798	rs945211	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p35.2	BAI2	rs945211-G	0.384293	2E-9		0.00849357	[0.0057-0.0113] unit decrease	Affymetrix [12370749]	N
830	chr1	32191797	32191798	rs945211	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p35.2	NR	rs945211-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
830	chr1	32191797	32191798	rs945211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p35.2		rs945211-?	NR	7E-12				NR [~ 8900000] (imputed)	N
830	chr1	32191797	32191798	rs945211	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p35.2	NA	rs945211-C	0.6269	5E-13		0.0127	[0.0092-0.0162] unit increase	NR [~ 27400000] (imputed)	N
830	chr1	32191797	32191798	rs945211	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p35.2	ADGRB2	rs945211-G	0.383	3E-8		0.073	[0.048-0.098] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
830	chr1	32191797	32191798	rs945211	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p35.2	ADGRB2	rs945211-G	0.383	3E-9		0.086	[0.058-0.114] unit decrease	Affymetrix [~ 11900000] (imputed)	N
830	chr1	32195818	32195819	rs1889571	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p35.2	NR	rs1889571-G	0.131	7E-13		0.0115186	[0.0084-0.0147] unit increase	NR [9732723] (imputed)	N
830	chr1	32195818	32195819	rs1889571	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p35.2	NR	rs1889571-G	0.131	4E-9		0.0221798	[0.015-0.03] unit increase	NR [~ 10000000] (imputed)	N
830	chr1	32196646	32196647	rs909001	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1p35.2	BAI2	rs909001-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
830	chr1	32197256	32197257	rs3766823	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	1p35.2	NR	rs3766823-G		5E-6				Illumina [458525]	N
830	chr1	32199098	32199099	rs10798888	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p35.2	BAI2	rs10798888-T	0.1744	1E-9		0.0158131	[0.011-0.021] unit decrease	Affymetrix [up to 18485882] (imputed)	N
830	chr1	32199098	32199099	rs10798888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.2		rs10798888-T	0.1725	5E-14		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
830	chr1	32199098	32199099	rs10798888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p35.2	Intergenic	rs10798888-T	0.1725	9E-14	(MTAG)	0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr1	32204682	32204683	rs2050256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p35.2	Intergenic	rs2050256-A	0.8304	4E-8	(MTAG)	0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
830	chr1	32206555	32206556	rs12044095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.2		rs12044095-A	0.0342	5E-10	(conditional-joint)	0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
830	chr1	32207989	32207990	rs12739999	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1p35.2	ADGRB2	rs12739999-G	NR	3E-12		0.0116389	[0.0084-0.0149] unit increase	Affymetrix [10061374] (imputed)	N
830	chr1	32207989	32207990	rs12739999	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p35.2	NR	rs12739999-A	0.1704	5E-11		0.021676647	[0.015-0.028] unit increase	Affymetrix [10549349] (imputed)	N
830	chr1	32207989	32207990	rs12739999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p35.2	NR	rs12739999-A	0.173	6E-9		0.0113111	[0.0075-0.0151] unit decrease	NR [9732723] (imputed)	N
830	chr1	32207989	32207990	rs12739999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p35.2		rs12739999-?	NR	1E-8				NR [~ 8900000] (imputed)	N
830	chr1	32221912	32221913	rs4949223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p35.2		rs4949223-A	0.1307	1E-8	(conditional-joint)	0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
831	chr1	32270642	32270643	rs75570615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p35.2	SPOCD1	rs75570615-T	NR	7E-9		0.0283383	[0.019-0.038] unit increase	Affymetrix [323123] (imputed)	N
831	chr1	32274900	32274901	rs72664935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	1p35.2	NR	rs72664935-C	0.575433	2E-9		0.0186769	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
831	chr1	32275782	32275783	rs142653378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.2		rs142653378-?	NR	4E-11				NR [~ 8900000] (imputed)	N
831	chr1	32290077	32290078	rs10798893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p35.2	NR	rs10798893-T	0.445476	2E-15		0.017695557	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
831	chr1	32290077	32290078	rs10798893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p35.2	NR	rs10798893-T	0.445478	5E-14		0.016842546	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
831	chr1	32290077	32290078	rs10798893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p35.2		rs10798893-T	0.445446	3E-15		0.017640729	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
831	chr1	32295883	32295884	rs11589186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p35.2		rs11589186-A	0.446978	4E-16		0.018112868	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
831	chr1	32313362	32313363	rs34975537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p35.2	RP11-84A19.2	rs34975537-A	NR	5E-8		0.0332372	[0.021-0.045] unit increase	Affymetrix [321114] (imputed)	N
831	chr1	32327944	32327945	rs11803434	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	1p35.2	NR	rs11803434-G	NR	2E-6	(phenotype 2)	3.57	[NR]	Illumina [> 8000000] (imputed)	N
831	chr1	32332349	32332350	rs147197357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p35.2		rs147197357-G	NR	1E-10		0.1489	[0.1-0.19] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
831	chr1	32332349	32332350	rs147197357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p35.2	NR	rs147197357-A	0.997301	2E-11		0.133649	[0.095-0.173] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
831	chr1	32356814	32356815	rs34701865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p35.2	RP11-84A19.4	rs34701865-T	NR	1E-8		0.0366053	[0.024-0.049] unit increase	Affymetrix [323123] (imputed)	N
831	chr1	32358696	32358697	rs681761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p35.2	RP11-84A19.4	rs681761-G	NR	3E-8		0.0223279	[0.014-0.03] unit increase	Affymetrix [323123] (imputed)	N
832	chr1	32393577	32393578	rs10914505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.2		rs10914505-?	NR	5E-40				NR [~ 8900000] (imputed)	N
832	chr1	32393821	32393824	rs61516782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p35.2		rs61516782-T	NR	2E-28		0.0274	[0.022-0.032] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
832	chr1	32397126	32397127	rs72665000	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p35.2	NR	rs72665000-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
832	chr1	32397889	32397890	rs591833	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p35.2	PTP4A2	rs591833-A	0.1334	4E-21		0.026	[0.021-0.031] unit increase	Affymetrix [18391927] (imputed)	N
833	chr1	32529887	32529888	rs4949489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.2		rs4949489-?	NR	4E-9				NR [~ 8900000] (imputed)	N
833	chr1	32558621	32558622	rs74460673	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (> 10 hours)	90,515 individuals	NA	1p35.2	TMEM39B	rs74460673-A	NR	3E-8		3.822	[3.35-4.3] unit increase	NR [11024754] (imputed)	N
834	chr1	32725235	32725236	rs56348024	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p35.2	NR	rs56348024-?	NR	8E-6		4.457	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
835	chr1	32827600	32827601	rs57541735	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1p35.1	BSDC1, TSSK3, FAM229A	rs57541735-C	0.058	4E-16		0.44	[0.33-0.54] unit decrease	Affymetrix [339439]	N
835	chr1	32831542	32831543	rs476153	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1p35.1		rs476153-?	NR	3E-8				Affymetrix [NR] (imputed)	N
835	chr1	32831542	32831543	rs476153	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p35.1	BSDC1	rs476153-T	0.8625	8E-6		0.0459	[0.026-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
836	chr1	32934776	32934777	rs150769018	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	1p35.1	NR	rs150769018-G		9E-6		0.3069	[0.17-0.44] SD units decrease	NR [10700000] (imputed)	N
838	chr1	33196119	33196120	rs59020573	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p35.1	NR	rs59020573-G	0.9075	1E-8		0.0503	[0.033-0.068] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
838	chr1	33197771	33197772	rs699007	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p35.1		rs699007-C	0.4	4E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
838	chr1	33197771	33197772	rs699007	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p35.1	NR	rs699007-C	0.3707	3E-9				NR [9056863] (imputed)	N
838	chr1	33227592	33227593	rs61798840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p35.1		rs61798840-T	0.913089	4E-8		0.038666	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
838	chr1	33232524	33232525	rs12022461	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p35.1	NA	rs12022461-A	0.1674	1E-13		0.0167	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
838	chr1	33234127	33234128	rs3737992	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p35.1	KIAA1522	rs3737992-G	0.831	5E-14		0.0137318	[0.01-0.017] unit increase	Affymetrix [12370749]	N
838	chr1	33234127	33234128	rs3737992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p35.1	NR	rs3737992-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
838	chr1	33234127	33234128	rs3737992	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p35.1	NR	rs3737992-A	0.168	2E-9		0.019821854	[0.013-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
838	chr1	33234127	33234128	rs3737992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p35.1		rs3737992-?	NR	2E-11				NR [~ 8900000] (imputed)	N
839	chr1	33342303	33342304	rs2786547	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p35.1	FNDC5, HPCA	rs2786547-C		2E-14		0.0087	[0.0065-0.0109] unit increase	Affymetrix [13304133] (imputed)	N
839	chr1	33377097	33377098	rs528244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p35.1		rs528244-A	NR	4E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
839	chr1	33392426	33392427	rs527504	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	1p35.1	TMEM54, RNF19B	rs527504-A	0.19	4E-9		0.032	NR unit decrease	Illumina [9591901] (imputed)	N
840	chr1	33531256	33531257	rs115446434	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	1p35.1	intergenic	rs115446434-C	NR	6E-7		0.329	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
840	chr1	33538963	33538964	rs804427	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	1p35.1	ADC, TRIM62, AK2	rs804427-?	NR	5E-8		0.79	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
840	chr1	33541112	33541113	rs199563603	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	1p35.1	NR	rs199563603-T	0.19379	5E-6		0.1009577	[0.06-0.14] unit increase	Illumina [9469131] (imputed)	N
841	chr1	33554995	33554996	rs143428121	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p35.1	ADC	rs143428121-T	0.0129594886038993	6E-6	(G_Coprococcus_HB)	1.3299	[0.75-1.91] unit decrease	Illumina [7711310] (imputed)	N
842	chr1	33739196	33739197	rs7536414	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	1p35.1		rs7536414-?	NR	5E-7		0.21	[0.13-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
842	chr1	33755532	33755533	rs12730651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p35.1		rs12730651-?	NR	3E-10				NR [~ 8900000] (imputed)	N
842	chr1	33760742	33760743	rs4641276	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1p35.1	ZNF362	rs4641276-T	0.2455	4E-8		0.0128406	[0.0083-0.0174] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
842	chr1	33762240	33762242	rs56923574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p35.1	ZNF362	rs56923574-A	0.339842	6E-14		0.017784785	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
842	chr1	33766220	33766221	rs45496701	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	1p35.1		rs45496701-G	NR	9E-6	(GLM)	3.1538	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
842	chr1	33774751	33774752	rs10753280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p35.1	A3GALT2, RP11-415J8.3	rs10753280-C	0.68301	3E-13		0.017396454	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr1	33776430	33776431	rs4653015	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	1p35.1	ZNF362	rs4653015-T	0.26	4E-9		1.027	[1.018-1.037]	Affymetrix [7736308] (imputed)	N
842	chr1	33776430	33776431	rs4653015	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	1p35.1	NR	rs4653015-T	0.27	2E-7		0.032	[0.02-0.044] unit increase	Affymetrix [NR] (imputed)	N
842	chr1	33784145	33784146	rs6682438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p35.1		rs6682438-?	NR	1E-9				NR [~ 8900000] (imputed)	N
842	chr1	33786877	33786878	rs59971635	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1p35.1	NR	rs59971635-?	NR	3E-6		0.1433	[0.083-0.204] unit increase	Illumina [at least 560000] (imputed)	N
842	chr1	33788883	33788884	rs7542777	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p35.1	NR	rs7542777-?		3E-6				Illumina [4322238] (imputed)	N
842	chr1	33795571	33795572	rs10914684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p35.1		rs10914684-A	NR	9E-18		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
842	chr1	33795571	33795572	rs10914684	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p35.1		rs10914684-G	0.661	4E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
842	chr1	33795571	33795572	rs10914684	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p35.1	PHC2	rs10914684-A	0.3282	1E-12		0.015183688	[0.011-0.019] unit decrease	Affymetrix [11514654] (imputed)	N
842	chr1	33795571	33795572	rs10914684	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1p35.1	PHC2	rs10914684-A	0.325	5E-9		0.016068757	[0.011-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
842	chr1	33795571	33795572	rs10914684	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p35.1	NR	rs10914684-A	0.324	7E-14		0.00865256	[0.0064-0.0109] unit decrease	NR [9732723] (imputed)	N
842	chr1	33795571	33795572	rs10914684	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p35.1	NR	rs10914684-A	0.324	6E-9		0.015803844	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
842	chr1	33795571	33795572	rs10914684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p35.1		rs10914684-?	NR	4E-9				NR [~ 8900000] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p35.1	PHC2	rs55745410-A	0.644	6E-16		0.01	[0.0076-0.0124] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p35.1	PHC2	rs55745410-A	0.6424	4E-8		0.011124581	[0.0072-0.0151] unit increase	Illumina [9339358] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p35.1		rs55745410-?	NR	5E-17				NR [~ 8900000] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p35.1	NR	rs55745410-?	NR	6E-7	(male)	0.18342	[0.11-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p35.1	NR	rs55745410-?	NR	2E-8	(female)	0.14087	[0.091-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
842	chr1	33802816	33802817	rs55745410	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p35.1	NR	rs55745410-?	NR	1E-12		0.16415	[0.12-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
842	chr1	33809436	33809437	rs10798939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p35.1		rs10798939-G	NR	6E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
843	chr1	33816725	33816726	rs12044012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p35.1	NR	rs12044012-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
843	chr1	33828258	33828259	rs6680310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.1	NR	rs6680310-A	0.296376	2E-15				Affymetrix, Illumina [24588908] (imputed)	N
843	chr1	33828360	33828362	rs10607655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p35.1		rs10607655-C	NR	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
843	chr1	33828365	33828366	rs55754029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p35.1	NR	rs55754029-A	0.546551	3E-10		0.012217	[0.0084-0.016] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
843	chr1	33830412	33830413	rs4653102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p35.1	NR	rs4653102-C	0.546422	6E-13		0.013288	[0.0097-0.0169] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
843	chr1	33830412	33830413	rs4653102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p35.1	NR	rs4653102-C	0.546567	2E-16		0.016332	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
843	chr1	33830412	33830413	rs4653102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p35.1		rs4653102-?	NR	1E-12				NR [~ 8900000] (imputed)	N
843	chr1	33836795	33836796	rs7545416	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p35.1	NR	rs7545416-C	0.3264	3E-9				NR [9056863] (imputed)	N
843	chr1	33836942	33836942	rs763419113	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p35.1	PHC2	rs763419113-A	0.3373	6E-17		0.0166	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
843	chr1	33837333	33837334	rs58107686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p35.1	NR	rs58107686-A	0.328	2E-12		0.0100772	[0.0073-0.0129] unit decrease	NR [~ 9732723] (imputed)	N
843	chr1	33837333	33837334	rs58107686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1p35.1	NR	rs58107686-A	0.328	8E-10		0.009747126	[0.0066-0.0129] unit decrease	NR [~ 10000000] (imputed)	N
843	chr1	33841858	33841859	rs4345778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.1	NR	rs4345778-T	0.551777	8E-13				Affymetrix, Illumina [24332387] (imputed)	N
843	chr1	33841858	33841859	rs4345778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p35.1	NR	rs4345778-T	0.552969	2E-15				Affymetrix, Illumina [19872809] (imputed)	N
843	chr1	33868468	33868469	rs4652875	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p35.1	PHC2	rs4652875-C	0.4222	5E-10		0.1098	[0.075-0.144] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
843	chr1	33878553	33878554	rs6663484	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p35.1	NR	rs6663484-G	0.361	2E-10		0.0145221	[0.01-0.019] unit increase	NR [9732723] (imputed)	N
843	chr1	33882074	33882075	rs56084563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	1p35.1		rs56084563-A	0.270697	1E-8		0.0215275	[0.014-0.029] unit decrease	Illumina [13478792] (imputed)	N
843	chr1	33883745	33883746	rs72658302	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p35.1	PHC2	rs72658302-T	0.8096	7E-11		0.006	[0.0042-0.0078] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
843	chr1	33886520	33886521	rs72660103	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	1p35.1	PHC2, ZSCAN20	rs72660103-?	NR	9E-9		0.02288	[0.015-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
843	chr1	33892963	33892964	rs1324481	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	1p35.1	NR	rs1324481-G	0.683	4E-8		1.0300783	NR	NR [8968716] (imputed)	N
843	chr1	33910931	33910932	rs1535919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p35.1		rs1535919-C	NR	2E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
843	chr1	33911646	33911647	rs12564600	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p35.1	NR	rs12564600-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
843	chr1	33914332	33914333	rs11577667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p35.1		rs11577667-G	NR	2E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
843	chr1	33915750	33915751	rs2336240	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	1p35.1	PHC2	rs2336240-?	NR	3E-8		0.044	NR L increase	Affymetrix [9390170] (imputed)	N
843	chr1	33920585	33920586	rs12032996	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1p35.1	PHC2, ZSCAN20	rs12032996-G	0.838	4E-9	(EA)	0.016	[0.01-0.022] unit increase	NR [12082474] (imputed)	N
843	chr1	33920585	33920586	rs12032996	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1p35.1	PHC2, ZSCAN20	rs12032996-G	0.838	9E-11		0.01463	[0.01-0.019] unit increase	Affymetrix [11709857] (imputed)	N
843	chr1	33921201	33921202	rs12565114	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 21 levels	4,201 Taiwanese ancestry individuals	NA	1p35.1		rs12565114-G	0.69	6E-7		0.048	[0.028-0.068] unit increase	Affymetrix [7897704] (imputed)	N
843	chr1	33928757	33928758	rs12565140	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	1p35.1	NR	rs12565140-?	0.136	3E-7		1.425	[1.247-1.629] unit increase	Illumina [563945]	N
843	chr1	33945600	33945601	rs71647933	26629533	Meng W	2015-08-04	EBioMedicine	A Genome-wide Association Study Provides Evidence of Sex-specific Involvement of Chr1p35.1 (ZSCAN20-TLR12P) and Chr8p23.1 (HMGB1P46) With Diabetic Neuropathic Pain.	Neuropathic pain in type 2 diabetes	470 European ancestry male cases, 491 European ancestry female cases, 2,021 European ancestry male controls, 1,239 European ancestry female controls	NA	1p35.1	ZSCAN20, TLR12P	rs71647933-G	0.16	3E-7	(females)	2.31	[1.68-3.17]	Affymetrix, Illumina [6906962] (imputed)	N
843	chr1	33945830	33945831	rs35260355	26629533	Meng W	2015-08-04	EBioMedicine	A Genome-wide Association Study Provides Evidence of Sex-specific Involvement of Chr1p35.1 (ZSCAN20-TLR12P) and Chr8p23.1 (HMGB1P46) With Diabetic Neuropathic Pain.	Neuropathic pain in type 2 diabetes	470 European ancestry male cases, 491 European ancestry female cases, 2,021 European ancestry male controls, 1,239 European ancestry female controls	NA	1p35.1	ZSCAN20, TLR12P	rs35260355-T	0.16	4E-7		1.66	[1.37-2.02]	Affymetrix, Illumina [6906962] (imputed)	N
844	chr1	33983018	33983019	rs10798959	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	1p35.1	CSMD2	rs10798959-T		8E-6		0.2835	unit increase	Illumina [5767231] (imputed)	N
844	chr1	33987777	33987778	rs923880	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	1p35.1	CSMD2	rs923880-C	0.43	8E-6	(GEE model, both 3 and 6 months)	0.25	[0.14-0.36] unit decrease	Illumina [4253138] (imputed)	N
844	chr1	34039843	34039844	rs10914746	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 24 weeks)	78 European ancestry cases, 20 European ancestry controls	NA	1p35.1	CSMD2	rs10914746-G	0.43	9E-6	(CGI)	4.63		Illumina [266820] (imputed)	N
844	chr1	34054228	34054229	rs1417965	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		1p35.1	NR	rs1417965-G	NR	3E-6		1.12516	[1.07124-1.18179]	Affymetrix [5734850] (imputed)	N
845	chr1	34134504	34134505	rs17536688	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p35.1	NR	rs17536688-A	0.0453	3E-9	(NUCB2)	0.008171	NR unit increase	Illumina [1671387] (imputed)	N
845	chr1	34151259	34151260	rs12023377	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	1p35.1	CSMD2	rs12023377-?	0.07192	5E-6		7.374	[NR]	Affymetrix [559609]	N
845	chr1	34173819	34173820	rs564148	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	1p35.1	CSMD2	rs564148-?	NR	9E-6	(SF10)			Affymetrix [5476100] (imputed)	N
846	chr1	34248063	34248064	rs476463	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	1p35.1	CSMD2	rs476463-?	0.12	1E-6				Illumina [448293]	N
846	chr1	34254271	34254272	rs115780313	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1p35.1	CSMD2	rs115780313-C	0.002	6E-6	(ephinephrine low 2)	1.3	[0.74-1.86] unit increase	Illumina [129094]	N
846	chr1	34298360	34298361	rs79024726	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	1p35.1	CSMD2	rs79024726-T	0.813907	9E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [~ 11700000] (imputed)	N
846	chr1	34298360	34298361	rs79024726	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	1p35.1	CSMD2	rs79024726-T	0.81	5E-8		1.11	[1.07-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
846	chr1	34309032	34309033	rs748267034	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p35.1	CSMD2	rs748267034-A	0.9985	3E-6		2.2529	[1.31-3.2] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
846	chr1	34330069	34330070	rs144223004	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	1p35.1	HMGB4, CSMD2	rs144223004-T	0.0	5E-18				Illumina [239042]	N
846	chr1	34339952	34339953	rs17342699	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	1p35.1	Intergenic	rs17342699-?		6E-6		3.145	[NR]	Affymetrix [492217] (imputed)	N
847	chr1	34358197	34358198	rs6697926	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	An181 abundance in stool	5,959 Finnish ancestry individuals	NA	1p35.1		rs6697926-C	0.361313	5E-8		0.0483724	[0.031-0.066] unit increase	Illumina [7980478] (imputed)	N
847	chr1	34359857	34359858	rs2281597	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	1p35.1	CSMD2	rs2281597-?	NR	5E-7				Affymetrix [504219]	N
847	chr1	34424490	34424491	rs483069	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	1p35.1	CSMD2, HMGB4	rs483069-A	0.32	1E-6		0.46	[0.28-0.64] unit decrease	Illumina [NR] (imputed)	N
847	chr1	34438956	34438957	rs10753297	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	1p35.1	CSMD2	rs10753297-T	NR	6E-7		0.138	[0.085-0.191] unit decrease	Illumina [5527232] (imputed)	N
847	chr1	34439293	34439294	rs506546	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	1p35.1	CSMD2	rs506546-?	NR	1E-6	(Response)	1.32	[NR]	Illumina [~ 7000000] (imputed)	N
848	chr1	34478483	34478484	rs4653367	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1p35.1	CSMD2	rs4653367-G		7E-6	(Hispanic)	2.0408163	[1.09-3.85]	Affymetrix, Illumina [NR] (imputed)	N
848	chr1	34569099	34569100	rs148697385	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p35.1	CSMD2	rs148697385-T	NR	5E-7		0.86429	[0.53-1.2] unit increase	Illumina [NR] (imputed)	N
848	chr1	34584392	34584393	rs12031634	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p35.1	CSMD2	rs12031634-G	0.703431	5E-9		0.00880574	[0.0059-0.0118] unit increase	Affymetrix [12370749]	N
848	chr1	34584392	34584393	rs12031634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p35.1		rs12031634-?	NR	1E-10				NR [~ 8900000] (imputed)	N
848	chr1	34602869	34602870	rs9426003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p35.1	NR	rs9426003-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
849	chr1	34604566	34604567	rs9662615	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals	NA	1p35.1	CSMD2	rs9662615-T	0.44	5E-7		0.45	[0.27-0.62] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
849	chr1	34663410	34663411	rs1414474	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	1p35.1	NR	rs1414474-?	NR	1E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.6	[NR]	Affymetrix, Illumina [NR] (imputed)	N
849	chr1	34665646	34665647	rs1542555	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p35.1	C1orf94	rs1542555-?		4E-6				Illumina [4322238] (imputed)	N
849	chr1	34726551	34726552	rs7519574	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p35.1	NR	rs7519574-A	0.181694	2E-11		0.016991	[0.012-0.022] unit increase	Affymetrix [16668957] (imputed)	N
849	chr1	34731983	34731984	rs915416	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	1p35.1	NR	rs915416-C	NR	2E-12		0.966	unit increase	Affymetrix [14661600] (imputed)	N
849	chr1	34731983	34731984	rs915416	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	1p35.1		rs915416-C	0.2906	8E-12		0.01842	[0.013-0.024] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
850	chr1	34736051	34736052	rs7524118	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	1p35.1	C1orf94, GJB5	rs7524118-C	NR	5E-8		1.03		NR [14661600] (imputed)	N
850	chr1	34750935	34750936	rs771390	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	1p35.1	C1orf94	rs771390-C	0.757	6E-7	(All GGE)	1.22	[1.12-1.32]	Affymetrix [4560000] (imputed)	N
850	chr1	34815452	34815453	rs6660749	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Pediatric nonalcoholic steatohepatitis	46 Hispanic boy definite NASH cases, 110 Hispanic boy borderline NASH controls	NA	1p34.3	C1orf94	rs6660749-?	NR	8E-6				Illumina [up to 624297]	N
851	chr1	34871598	34871599	rs114104995	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD3G	5,348 Icelandic ancestry individuals	NA	1p34.3		rs114104995-A	0.02758	2E-13		0.114388	[0.084-0.145] unit increase	Illumina [7506463] (imputed)	N
851	chr1	34947724	34947725	rs3896119	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	Cigarettes smoked per day in Schizophrenia	3,370 European ancestry individuals	1,802 East Asian individuals	1p34.3	intergenic	rs3896119-?	NR	5E-7				NR [9500000] (imputed)	N
851	chr1	34968256	34968257	rs12402440	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	1p34.3	GJB5	rs12402440-?	NR	4E-6				Affymetrix [5908111] (imputed)	N
851	chr1	34968256	34968257	rs12402440	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	1p34.3	GJB5	rs12402440-?	NR	4E-6				Affymetrix [5908111] (imputed)	N
851	chr1	34984804	34984805	rs12038357	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	NR	rs12038357-?	NR	9E-6	(AA)	33.51	[31.33-35.69]	Illumina [905956]	N
851	chr1	34989236	34989237	rs10914967	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p34.3	GJB5	rs10914967-A	0.25	6E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
852	chr1	34996412	34996413	rs10737381	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	1p34.3	LOC105378641	rs10737381-?	0.32	2E-6	(model 2)	0.16	NR unit decrease	Illumina [628376]	N
852	chr1	35024603	35024604	rs12097329	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p34.3	NR	rs12097329-G	NR	6E-9		0.19	[0.13-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
852	chr1	35024603	35024604	rs12097329	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p34.3	NR	rs12097329-G	NR	7E-8				Affymetrix, Illumina [NR] (imputed)	N
852	chr1	35072297	35072298	rs4653061	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	1p34.3	GJB5, GJB4, GJB3, GJA4, SMIM12	rs4653061-?	NR	6E-7	(African)	0.0122	[0.012-0.013] unit increase	Affymetrix, Illumina [NR] (imputed)	N
852	chr1	35083233	35083234	rs11589940	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	1p34.3		rs11589940-C	NR	4E-6		0.37	[0.23-0.6]	Illumina [NR] (imputed)	N
852	chr1	35088971	35088972	rs2010387	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p34.3	MIR552	rs2010387-A	0.1107	4E-6		0.0672	[0.039-0.096] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
852	chr1	35092425	35092426	rs35929305	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	1p34.3	RP4-657M3.2, MIR552	rs35929305-T	0.2187	6E-7	(EA)	0.0293	[0.018-0.041] unit increase	Affymetrix, Illumina [NR] (imputed)	N
852	chr1	35100635	35100636	rs4308942	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	1p34.3	GJB	rs4308942-?	NR	1E-6				Illumina [9008729] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	8E-10	(LCP1)	0.6197	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	4E-11	(GSN)	0.04801	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	3E-9	(GSTP1)	0.1898	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	3E-8	(FLNA)	0.8971	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	3E-16	(LDHB)	0.1983	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	3E-10	(CORO1A)	0.08632	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	2E-9	(FKBP1A)	0.02674	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	2E-8	(PRELP)	0.1165	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	2E-10	(S100A4)	0.0931	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	2E-10	(ARHGDIB)	0.07494	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	1E-9	(S100A6)	0.1018	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	1E-8	(TPM3)	0.2673	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35155293	35155294	rs72655737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs72655737-C	0.01742	1E-12	(PKM)	0.5181	NR unit increase	Illumina [1671387] (imputed)	N
853	chr1	35157715	35157716	rs10915020	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	1p34.3	MIR552, GJB5	rs10915020-A	0.084	5E-7		1.32	[1.15-1.52]	Illumina [111240]	N
853	chr1	35209388	35209389	rs7527836	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (itching)	676 Japanese ancestry female cases, 5,058 Japanese ancestry female controls	669 Japanese ancestry female cases, 4,945 Japanese ancestry female controls	1p34.3	NR	rs7527836-C	0.853411466	2E-6		0.25703934	[0.15-0.36] unit decrease	Affymetrix [536506]	N
853	chr1	35215223	35215224	rs626096	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1p34.3	intergenic	rs626096-T	0.056	2E-16		0.41	[0.32-0.51] unit decrease	Affymetrix [339439]	N
853	chr1	35246652	35246653	rs2359644	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	1p34.3	GJB3	rs2359644-C	0.36	7E-10		6.16	NR z score increase	Illumina [at least 900015] (imputed)	N
853	chr1	35257462	35257463	rs4653092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.3	SMIM12	rs4653092-A	0.348875	1E-22		0.023242101	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
854	chr1	35279613	35279614	rs28404134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.3	SMIM12	rs28404134-T	0.229973	3E-11		0.017805513	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
854	chr1	35289038	35289039	rs7526035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.3	SMIM12	rs7526035-A	0.528137	3E-9		0.013478563	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr1	35289038	35289039	rs7526035	22648509	Wang KS	2012-05-31	J Mol Neurosci	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NA	1p34.3	GJA4	rs7526035-?	0.54	9E-6		1.29	[NR]	Affymetrix [729454]	N
854	chr1	35291224	35291225	rs13303224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.3	NR	rs13303224-T	0.231531	3E-11		0.014454	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
854	chr1	35341981	35341982	rs7541937	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	1p34.3	DLGAP3	rs7541937-G	0.47	4E-6		0.07	[0.05-0.09] unit decrease	Illumina [~ 8300000] (imputed)	N
855	chr1	35413070	35413071	rs77109747	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	1p34.3	DLGAP3, LOC653160	rs77109747-A		5E-7	(AA)	0.14	[0.081-0.199] unit decrease	Illumina [at least 3251541] (imputed)	N
855	chr1	35481550	35481551	rs7555340	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	1p34.3	LOC653160, ZMYM1, ZMYM6, ZMYM6NB	rs7555340-?		4E-7		0.5635	[NR] unit decrease	Affymetrix [NR] (imputed)	N
856	chr1	35591625	35591626	rs11264100	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	1p34.3	NR	rs11264100-G	0.876	2E-9		0.022165932	[0.015-0.029] unit decrease	NR [~ 10000000] (imputed)	N
856	chr1	35639024	35639025	rs566606410	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1p34.3	SFPQ	rs566606410-T	0.0022	9E-6		0.6958	[0.39-1] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
857	chr1	35665779	35665780	rs111796550	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1p34.3	NR	rs111796550-A	0.0373333	8E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
857	chr1	35679186	35679187	rs60037734	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.3	NR	rs60037734-G	NR	7E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
857	chr1	35681737	35681738	rs76167968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.3		rs76167968-C	NR	2E-8		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
857	chr1	35681737	35681738	rs76167968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p34.3		rs76167968-?	NR	2E-10				NR [~ 8900000] (imputed)	N
857	chr1	35681737	35681738	rs76167968	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1p34.3	SFPQ, ZMYM4	rs76167968-T	0.93	1E-8		1.056	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
857	chr1	35687814	35687815	rs673604	21499250	Spurdle AB	2011-04-17	Nat Genet	Genome-wide association study identifies a common variant associated with risk of endometrial cancer.	Endometrial cancer	1,265 European ancestry cases, 5,190 European ancestry controls	3,957 European ancestry cases, 6,886 European ancestry controls	1p34.3	SFPQ	rs673604-?	NR	6E-6		1.21	[1.12-1.32]	Illumina [519655]	N
857	chr1	35725202	35725203	rs11581846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p34.3	RN7SL136P	rs11581846-A	0.907	1E-9		0.03742534	[0.025-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
857	chr1	35734986	35734997	rs72327719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA		ZMYM4	rs72327719-A	0.9067602	2E-13		0.02830071	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
857	chr1	35779987	35779988	rs12069385	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p34.3	ZMYM4, SNORA62, ZMYM4-AS1, RNY5P1	rs12069385-T	NR	8E-8	(sleep duration)	0.8877	[0.56-1.21] unit decrease	Affymetrix [7141204] (imputed)	N
858	chr1	35841257	35841258	rs559986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p34.3		rs559986-?	NR	5E-8				NR [~ 8900000] (imputed)	N
858	chr1	35868433	35868433	rs113408476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p34.3	ZMYM4	rs113408476-ACTTTTTC	NR	2E-8		0.0277174	[0.018-0.037] unit increase	Affymetrix [321114] (imputed)	N
858	chr1	35868433	35868433	rs113408476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p34.3	ZMYM4	rs113408476-ACTTTTTC	NR	5E-8		0.0271021	[0.017-0.037] unit increase	Affymetrix [321169] (imputed)	N
858	chr1	35868433	35868433	rs113408476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p34.3	NR	rs113408476-A	0.909025	3E-10		0.012891	[0.0087-0.0171] unit increase	Affymetrix [16585854] (imputed)	N
858	chr1	35868433	35868433	rs113408476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p34.3	NR	rs113408476-A	0.909025	2E-6		0.0115529	[0.0067-0.0164] unit increase	Affymetrix [16585866] (imputed)	N
858	chr1	35908450	35908451	rs2275247	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1p34.3	KIAA0319L	rs2275247-?		1E-10	(lcSSc)	1.51	[NR]	Illumina [NR]	N
859	chr1	36044298	36044299	rs144840848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p34.3	TFAP2E	rs144840848-A	0.00658999999999999	3E-9		0.08365555	[0.056-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr1	36087660	36087661	rs574384	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1p34.3	PSMB2	rs574384-A	0.894668	2E-8		0.13360222	[0.087-0.18] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
860	chr1	36129143	36129144	rs74913373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.3		rs74913373-A	0.028257	5E-13		0.049648218	[0.036-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	7E-9	(SLC25A5)	0.1121	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	3E-8	(UGT2B15)	0.4378	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	2E-9	(VDAC2)	0.0898	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	2E-8	(SLC25A3)	0.1269	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	2E-8	(SLC25A13)	0.3881	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	2E-8	(SDHB)	0.2019	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36187397	36187398	rs12129084	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs12129084-G	0.01394	1E-9	(VDAC1)	0.3501	NR unit increase	Illumina [1671387] (imputed)	N
861	chr1	36190981	36190982	rs144655586	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Hip circumference adjusted for BMI	7,272 Hispanic or Latin American females, 5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American individuals, 8,913 African American females, 758 African American males, 4,795 European ancestry females, 4,281 European ancestry males	1p34.3		rs144655586-T	0.011	1E-6		4.873	z score increase	Illumina [NR] (imputed)	N
861	chr1	36212546	36212547	rs34390044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.3	CLSPN	rs34390044-T	0.007633	7E-13		0.087992	[0.065-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr1	36212546	36212547	rs34390044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p34.3	CLSPN	rs34390044-T	0.00762200000000002	3E-10		0.07957066	[0.055-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr1	36212546	36212547	rs34390044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs34390044-T	0.00754682	8E-15				Affymetrix, Illumina [24246363] (imputed)	N
861	chr1	36212546	36212547	rs34390044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p34.3	NR	rs34390044-T	0.007669	5E-17		0.092366	[0.071-0.114] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
861	chr1	36212546	36212547	rs34390044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs34390044-T	0.00753664	7E-13				Affymetrix, Illumina [20825802] (imputed)	N
861	chr1	36225947	36225948	rs7537203	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	1p34.3	CLSPN	rs7537203-C	0.1522	4E-7		0.0176	[0.011-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
861	chr1	36225947	36225948	rs7537203	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	1p34.3	CLSPN	rs7537203-C	0.1262	7E-6		0.0174	[0.0098-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
861	chr1	36260436	36260437	rs182524742	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.3	intergenic	rs182524742-T	0.011	3E-10		0.0578	[0.04-0.076] unit decrease	Affymetrix [18391927] (imputed)	N
861	chr1	36275111	36275112	rs12083902	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p34.3	NR	rs12083902-?	NR	4E-8		1.0718688	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
861	chr1	36283953	36283954	rs11264213	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.3	NR	rs11264213-A	NR	3E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
862	chr1	36321733	36321734	rs145204399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p34.3	NR	rs145204399-G	0.007544	1E-13		0.086031	[0.063-0.109] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
862	chr1	36326226	36326227	rs72661605	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.3	NR	rs72661605-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
862	chr1	36333187	36333188	rs138407025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.3		rs138407025-A	NR	4E-9		0.0776	[0.052-0.103] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
862	chr1	36372419	36372420	rs561975502	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1p34.3	AGO1	rs561975502-C	0.01	9E-7	(African American)	1.86	[1.12-2.6] unit increase	Illumina [up to 13042663] (imputed)	N
863	chr1	36532315	36532316	rs491603	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Barrett's esophagus x BMI interaction	3,104 European ancestry cases, 2,182 European ancestry controls	NA	1p34.3	EIF2C3, LOC100128093	rs491603-A	0.16	4E-7		1.08		Illumina [993501]	N
864	chr1	36571919	36571920	rs96067	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	1p34.3	COL8A2	rs96067-?	NA	5E-10		1.76	[1.21-2.31] unit decrease	Affymetrix [5541230] (imputed)	N
864	chr1	36571919	36571920	rs96067	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	1p34.3	COL8A2	rs96067-A	0.69	3E-11		2.37	[1.68-3.06] unit increase	Affymetrix, Illumina [NR] (imputed)	N
864	chr1	36571919	36571920	rs96067	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	1p34.3	COL8A2	rs96067-A	0.8	3E-11		0.03	[-0.0092-0.0692] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
864	chr1	36573572	36573573	rs274760	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1p34.3	COL8A2	rs274760-C	0.94	1E-9				Affymetrix, Illumina [8002429] (imputed)	N
864	chr1	36574125	36574126	rs7543855	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p34.3	COL8A2	rs7543855-C	0.9371	2E-14		0.2222	[0.17-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
864	chr1	36579457	36579458	rs274136	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p34.3	COL8A2	rs274136-A	0.9367	2E-14		0.2226	[0.17-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
864	chr1	36581052	36581053	rs569405229	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p34.3	NR	rs569405229-T	0.00693723	2E-8		0.236308	[0.15-0.32] unit decrease	Affymetrix [17914406] (imputed)	N
864	chr1	36591611	36591612	rs12123086	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1p34.3	TRAPPC3	rs12123086-?	NR	8E-10		0.124	[0.084-0.164] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
864	chr1	36591611	36591612	rs12123086	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p34.3	COL8A2	rs12123086-G	0.886	2E-11		0.134	[0.095-0.173] unit increase	Affymetrix, Illumina [NR] (imputed)	N
864	chr1	36592522	36592522	rs146427742	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1p34.3	COL8A2	rs146427742-?	NR	2E-6		2.85		Illumina [6778521] (imputed)	N
864	chr1	36612954	36612955	rs4652902	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p34.3	TRAPPC3	rs4652902-A	NR	5E-6		0.038	unit increase	Illumina [15409056] (imputed)	N
864	chr1	36616940	36616941	rs7537052	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.3	NR	rs7537052-G	NR	3E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
864	chr1	36620800	36620801	rs1475267	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p34.3	MAP7D1	rs1475267-G	0.16	2E-8		0.5	[0.32-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
864	chr1	36653539	36653540	rs6680302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p34.3		rs6680302-A	NR	5E-11		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
864	chr1	36685737	36685738	rs500555	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p34.3	MAP7D1	rs500555-A	0.2869	1E-8		0.4503	[0.3-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
865	chr1	36709549	36709550	rs535040323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p34.3	THRAP3	rs535040323-C	0.253382	3E-13		0.018939951	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36709549	36709550	rs535040323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p34.3	THRAP3	rs535040323-C	0.253382	3E-13		0.018869726	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36709549	36709550	rs535040323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p34.3	THRAP3	rs535040323-C	0.253321	1E-14		0.019883404	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36709549	36709550	rs535040323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p34.3	THRAP3	rs535040323-C	0.25332	4E-15		0.020319283	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36712032	36712033	rs11578094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p34.3		rs11578094-T	NR	4E-13		0.0115	[0.0084-0.0146] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
865	chr1	36757800	36757801	rs6693113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p34.3		rs6693113-T	NR	1E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
865	chr1	36767399	36767400	rs882799	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.3	C1orf113	rs882799-?	NR	4E-6	(5-hydroxyindoleacetic acid)	0.22194947	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
865	chr1	36773404	36773405	rs35343437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.3	SH3D21	rs35343437-G	0.497286	4E-12		0.015558765	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36773404	36773405	rs35343437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.3	SH3D21	rs35343437-G	0.497294	8E-11		0.014552978	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36773404	36773405	rs35343437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p34.3	SH3D21	rs35343437-G	0.49755	1E-9		0.013529725	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr1	36773404	36773405	rs35343437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs35343437-G	0.54258	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
865	chr1	36773404	36773405	rs35343437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p34.3	NR	rs35343437-G	0.49315	2E-14		0.014078	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
865	chr1	36773404	36773405	rs35343437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.3		rs35343437-?	NR	7E-16				NR [~ 8900000] (imputed)	N
865	chr1	36789545	36789546	rs12116935	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.3	EVA1B	rs12116935-A	0.614	2E-23		0.0191	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
865	chr1	36789545	36789546	rs12116935	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p34.3	NR	rs12116935-G	0.3536	2E-8		0.0242	[0.016-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
865	chr1	36789545	36789546	rs12116935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.3		rs12116935-?	NR	2E-15				NR [~ 8900000] (imputed)	N
866	chr1	36833095	36833096	rs566921175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.3	STK40	rs566921175-C	0.00126400000000004	1E-9		0.20509116	[0.14-0.27] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36857582	36857595	rs200972810	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p34.3	NR	rs200972810-?	NR	5E-6		5.41	[4.14-7.08]	Illumina [539000] (imputed)	N
866	chr1	36857866	36857867	rs11263878	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	1p34.3	LSM10	rs11263878-C	0.821	2E-6		1.2195122	[1.12-1.33]	Illumina [32463443] (imputed)	N
866	chr1	36880828	36880829	rs2994007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	1p34.3	NR	rs2994007-G	0.389729	2E-20		0.034597	[0.027-0.042] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
866	chr1	36880828	36880829	rs2994007	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	1p34.3	LSM10, OSCP1	rs2994007-?	NR	4E-16		0.04725	[0.036-0.059] unit decrease novel	Illumina [6108953] (imputed)	N
866	chr1	36904719	36904720	rs6702784	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1p34.3	C1orf102, LSCM10, MRPS15	rs6702784-C	0.07	4E-6		1.08	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
866	chr1	36913123	36913124	rs138707712	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	1p34.3		rs138707712-T	NR	7E-7	(GLM)	4.7564	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
866	chr1	36915027	36915028	rs61706696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1p34.3		rs61706696-T	0.403318	2E-24		0.0355796	[0.029-0.042] unit increase	Illumina [13479091] (imputed)	N
866	chr1	36915027	36915028	rs61706696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	1p34.3		rs61706696-T	0.405166	2E-22		0.0464936	[0.037-0.056] unit increase	Illumina [13467171] (imputed)	N
866	chr1	36927529	36927530	rs78245381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	1p34.3	NR	rs78245381-A	0.608658	2E-17		0.043929	[0.034-0.054] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
866	chr1	36932046	36932047	rs146617729	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	1p34.3		rs146617729-?	NR	9E-9		0.0629232	[0.042-0.084] unit decrease	NR [9800000] (imputed)	N
866	chr1	36933758	36933759	rs138156467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.3	CSF3R	rs138156467-T	7.0899999999996E-4	3E-9		0.24558249	[0.16-0.33] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36935127	36935128	rs3917989	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	1p34.3		rs3917989-A	0.35	4E-8		0.08	unit increase	Illumina [2093892] (imputed)	N
866	chr1	36935127	36935128	rs3917989	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	1p34.3		rs3917989-A	0.35	3E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
866	chr1	36943915	36943916	rs3917932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p34.3		rs3917932-G	NR	2E-76		0.0367	[0.033-0.041] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
866	chr1	36943915	36943916	rs3917932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.3		rs3917932-G	NR	2E-94		0.0443	[0.04-0.049] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576746	2E-74		0.04100069	[0.037-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576783	1E-55		0.035499506	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576722	2E-99		0.047701683	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576904	1E-21		0.021653282	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576795	5E-40		0.029900374	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576755	5E-12		0.0155093605	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1p34.3	CSF3R	rs3917932-G	0.576812	1E-11		0.015317492	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs3917932-G	0.585271	8E-145				Affymetrix, Illumina [24649327] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.3	NR	rs3917932-G	0.577481	1E-127		0.044849	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs3917932-G	0.582546	9E-170				Affymetrix, Illumina [23114412] (imputed)	N
866	chr1	36943915	36943916	rs3917932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p34.3	NR	rs3917932-G	0.577138	3E-154		0.05153	[0.048-0.055] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
866	chr1	36943915	36943916	rs3917932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.3		rs3917932-?	NR	3E-95				NR [~ 8900000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	1p34.3	CSF3R	rs3917932-?	NR	5E-17		0.03726	[0.029-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5759	3E-31		0.04220662	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5757	1E-38		0.04726684	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5758	7E-39		0.04740183	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5759	1E-23		0.03620792	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5758	2E-39		0.04766949	[0.041-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5758	1E-36		0.04610926	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5758	4E-12		0.02504407	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5759	2E-17		0.03061337	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5759	1E-19		0.0328671	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36943915	36943916	rs3917932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p34.3	CSF3R	rs3917932-G	0.5758	6E-38		0.04685894	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36944297	36944298	rs3917929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1p34.3		rs3917929-C	0.388	9E-13				Affymetrix [10369434] (imputed)	N
866	chr1	36944300	36944301	rs3917928	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p34.3		rs3917928-C	0.388	6E-26				Affymetrix [10369434] (imputed)	N
866	chr1	36944300	36944301	rs3917928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p34.3	CSF3R	rs3917928-A	0.6121	1E-10		0.02352865	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36945712	36945713	rs3917922	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p34.3		rs3917922-C	0.988	1E-16				Affymetrix [10369434] (imputed)	N
866	chr1	36945712	36945713	rs3917922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917922-T	0.011709	2E-15		0.08235301	[0.062-0.103] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36945712	36945713	rs3917922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917922-T	0.011709	5E-12		0.071697906	[0.051-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36947887	36947888	rs3917914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p34.3	CSF3R	rs3917914-A	0.011924	3E-11		0.06841131	[0.048-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	2E-16		0.1393483	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	2E-21		0.1613275	[0.13-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	1E-21		0.1623373	[0.13-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	1E-21		0.1620793	[0.13-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	2E-20		0.1578214	[0.12-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947887	36947888	rs3917914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p34.3	CSF3R	rs3917914-A	0.0115	2E-21		0.1614943	[0.13-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr1	36947935	36947936	rs3917912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.3	CSF3R	rs3917912-T	0.010544	2E-22		0.10564811	[0.084-0.127] unit increase	Affymetrix [93095623] (imputed)	N
866	chr1	36947935	36947936	rs3917912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.3	CSF3R	rs3917912-T	0.010548	2E-28		0.120088115	[0.099-0.141] unit increase	Affymetrix [93095623] (imputed)	N
867	chr1	36970910	36970911	rs115055195	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	1p34.3	OSCP1, MRPS15, CSF3R, FTLP18	rs115055195-C	0.02	2E-6		1.39	[0.82-1.96] unit decrease	Illumina [8454470] (imputed)	N
867	chr1	36970910	36970911	rs115055195	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	1p34.3	OSCP1, MRPS15, CSF3R, FTLP18	rs115055195-C	0.02	5E-7		1.45	[0.88-2.02] unit decrease	Illumina [8454806] (imputed)	N
867	chr1	37000255	37000256	rs59362263	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs59362263-C	0.01045	3E-8	(SLC25A5)	0.1029	NR unit increase	Illumina [1671387] (imputed)	N
867	chr1	37000255	37000256	rs59362263	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs59362263-C	0.01045	2E-8	(VDAC1)	0.3072	NR unit increase	Illumina [1671387] (imputed)	N
867	chr1	37089922	37089923	rs7532617	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs7532617-T	NR	3E-9		5.924	z score increase	Affymetrix [10847151] (imputed)	N
868	chr1	37152138	37152139	rs142692454	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	1p34.3	CSF3R, GRIK3	rs142692454-A	NR	9E-7		0.794	[0.48-1.11] unit decrease	Illumina [27700000] (imputed)	N
868	chr1	37155359	37155360	rs531639	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1p34.3	NR	rs531639-T	0.6282	7E-9		0.0113	[0.0076-0.015] unit increase	Illumina [NR] (imputed)	N
868	chr1	37161254	37161255	rs681875	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	1p34.3	NR	rs681875-A	0.206279	3E-9		5.92	z score increase	NR [10847151] (imputed)	N
868	chr1	37161262	37161263	rs761718	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.3	Intergenic	rs761718-A	0.6815	5E-10	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
868	chr1	37162351	37162352	rs589249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.3	Intergenic	rs589249-A	0.6806	8E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
868	chr1	37162351	37162352	rs589249	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	1p34.3	NR	rs589249-A	0.6906	3E-10		0.0192	[0.013-0.025] unit decrease	Illumina [NR] (imputed)	N
868	chr1	37162351	37162352	rs589249	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	1p34.3	GRIK3	rs589249-G	0.64	3E-7		1.2	[NR]	NR [1085772] (imputed)	N
868	chr1	37163375	37163376	rs604149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.3	Intergenic	rs604149-A	0.6808	1E-12	(MTAG)	0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
868	chr1	37163655	37163656	rs488359	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1p34.3	NR	rs488359-G	NR	3E-8		0.01441	[0.0093-0.0195] unit increase	Affymetrix [10847151] (imputed)	N
868	chr1	37167332	37167333	rs218987	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	1p34.3	NR	rs218987-T	0.3052	1E-7		0.0074	[0.0047-0.0101] unit increase	NR [7666894] (imputed)	N
868	chr1	37178132	37178133	rs1876258	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs1876258-T	NR	7E-11		6.528	z score increase	Affymetrix [10847151] (imputed)	N
868	chr1	37182188	37182189	rs7515309	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.3		rs7515309-?	NR	5E-8				NR [NR]	N
868	chr1	37185189	37185190	rs1395455	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1p34.3	NR	rs1395455-A		4E-8		0.0245324	[0.016-0.033] unit increase	NR [6694342]	N
868	chr1	37185865	37185866	rs12117072	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	1p34.3	NR	rs12117072-T		5E-6		0.3912	[0.22-0.56] SD units decrease	NR [10700000] (imputed)	N
868	chr1	37192676	37192677	rs1002655	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	1p34.3	RP4, 614N24.1	rs1002655-C	0.3101	8E-13		0.01791712	[0.012-0.024] unit increase	NR [9417325] (imputed)	N
868	chr1	37192676	37192677	rs1002655	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs1002655-C	NR	5E-13		7.222	z score increase	Affymetrix [10847151] (imputed)	N
868	chr1	37192676	37192677	rs1002655	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1p34.3	NR	rs1002655-C	0.3013	4E-10		0.0146	[0.01-0.019] unit increase	Illumina [NR] (imputed)	N
868	chr1	37192740	37192741	rs1002656	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	1p34.3	NR	rs1002656-C	0.2905	8E-10		0.01183	[0.0081-0.0156] unit increase	NR [8968716] (imputed)	N
868	chr1	37192740	37192741	rs1002656	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p34.3	NR	rs1002656-C	NR	3E-11		1.0309278		NR [NR] (imputed)	N
868	chr1	37192740	37192741	rs1002656	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p34.3	GRIK3	rs1002656-?		1E-8				NR [6786993] (imputed)	N
868	chr1	37192740	37192741	rs1002656	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	1p34.3	ENSG00000234481	rs1002656-C	NR	2E-9		0.010652	[0.0072-0.0141] unit decrease	Affymetrix [18485882] (imputed)	N
868	chr1	37192740	37192741	rs1002656	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p34.3	NR	rs1002656-C	0.2967	5E-19		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
868	chr1	37193907	37193908	rs2102341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p34.3	NR	rs2102341-C	0.701646922500517	8E-14		0.007491602	[0.0055-0.0095] unit decrease	NR [NR]	N
868	chr1	37193907	37193908	rs2102341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p34.3		rs2102341-?	NR	2E-12				NR [~ 8900000] (imputed)	N
868	chr1	37194102	37194103	rs2089358	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p34.3	NR	rs2089358-C	0.2962	3E-10		1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
868	chr1	37196487	37196488	rs1472822	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs1472822-A	NR	3E-11		6.661	z score increase	Affymetrix [10847151] (imputed)	N
868	chr1	37196957	37196958	rs12123067	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p34.3	NR	rs12123067-A	0.4218	2E-8		0.02339158	[0.015-0.031] unit increase	NR [NR]	N
868	chr1	37197318	37197319	rs4653218	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	1p34.3	ENSG00000234481	rs4653218-T	NR	6E-11		0.011413	[0.008-0.0148] unit decrease	Affymetrix [18485882] (imputed)	N
868	chr1	37197318	37197319	rs4653218	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p34.3	NR	rs4653218-C	0.579	1E-7		0.0063	[0.0039-0.0087] unit decrease	NR [7666894] (imputed)	N
868	chr1	37198129	37198130	rs11263943	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	1p34.3	NR	rs11263943-A	NR	8E-12		0.01615	NR unit increase	NR [7259579]	N
868	chr1	37198129	37198130	rs11263943	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p34.3	NR	rs11263943-A	0.428827	1E-11		6.78	z score increase	NR [10847151] (imputed)	N
868	chr1	37200679	37200680	rs11576073	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs11576073-A	NR	3E-13		7.287	z score increase	Affymetrix [10847151] (imputed)	N
868	chr1	37202766	37202767	rs570399	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	1p34.3	intergenic	rs570399-A	0.57415	4E-12		6.948	z score decrease	Illumina [18485882] (imputed)	N
868	chr1	37203484	37203485	rs481121	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	1p34.3	GRIK1	rs481121-A	0.58	4E-7		0.14	[0.081-0.199] unit increase	Illumina [7411206] (imputed)	N
868	chr1	37219428	37219429	rs569460	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	1p34.3	ENSG00000234481	rs569460-C	NR	4E-10		0.011123	[0.0076-0.0146] unit decrease	Affymetrix [18485882] (imputed)	N
868	chr1	37220249	37220250	rs488614	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs488614-C	NR	2E-10		6.389	z score increase	Affymetrix [10847151] (imputed)	N
869	chr1	37228200	37228201	rs6425999	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	1p34.3	ENSG00000234481	rs6425999-T	NR	1E-8		0.010262	[0.0067-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
869	chr1	37228200	37228201	rs6425999	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p34.3	NR	rs6425999-C	0.228733609084903	2E-13		0.01294944	[0.0095-0.0164] unit increase	NR [NR]	N
869	chr1	37228200	37228201	rs6425999	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p34.3	NR	rs6425999-C	0.228733609084903	2E-13		0.008249672	[0.0061-0.0104] unit increase	NR [NR]	N
869	chr1	37233429	37233430	rs12083196	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p34.3	NR	rs12083196-C	0.230766696046401	6E-12		0.009586212	[0.0069-0.0123] unit increase	NR [NR]	N
869	chr1	37233429	37233430	rs12083196	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p34.3	NR	rs12083196-C	0.230766696046401	2E-10		0.01016623	[0.0071-0.0133] unit increase	NR [NR]	N
869	chr1	37240885	37240886	rs525798	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	1p34.3	GRIK3	rs525798-T	0.248839	6E-6		0.198534	[0.11-0.28] unit decrease	NR [7263501] (imputed)	N
869	chr1	37240885	37240886	rs525798	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p34.3	NR	rs525798-T	NR	2E-9		5.979	z score increase	Affymetrix [10847151] (imputed)	N
869	chr1	37242742	37242743	rs490647	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	1p34.3	NR	rs490647-A	0.24648	3E-7		0.029943	[0.018-0.041] unit increase	Illumina [18485882] (imputed)	N
869	chr1	37242742	37242743	rs490647	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1p34.3	NR	rs490647-A	0.214	6E-7		0.021459218	[0.013-0.03] unit increase	Affymetrix [up to 6544775] (imputed)	N
869	chr1	37242742	37242743	rs490647	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	1p34.3	GRIK3	rs490647-A	0.227	4E-8		0.092	[0.059-0.125] unit increase	Affymetrix [7207648] (imputed)	N
869	chr1	37259812	37259813	rs11263946	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	1p34.3	NR	rs11263946-G	0.76	2E-8		0.0161	[0.01-0.022] unit decrease	Illumina [NR] (imputed)	N
869	chr1	37305793	37305794	rs116540944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p34.3	GRIK3	rs116540944-G	0.973	2E-6	(AA)	0.064	unit increase	Illumina [NR] (imputed)	N
869	chr1	37309389	37309390	rs76264265	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p34.3	GRIK3	rs76264265-T	0.972	3E-6	(AA)	0.062	unit increase	Illumina [NR] (imputed)	N
869	chr1	37312704	37312705	rs77653389	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p34.3	GRIK3	rs77653389-C	0.972	3E-6	(AA)	0.062	unit increase	Illumina [NR] (imputed)	N
869	chr1	37350804	37350805	rs480495	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p34.3	NR	rs480495-?	NR	1E-6				Affymetrix [NR]	N
870	chr1	37376301	37376302	rs12130574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.3	CSF3R	rs12130574-?	NR	1E-6	(aspartate)	2.4232416	[1.45-3.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
871	chr1	37509351	37509352	rs2859741	28738859	de Jong K	2017-07-24	Respir Res	Genes and pathways underlying susceptibility to impaired lung function in the context of environmental tobacco smoke exposure.	Forced expiratory volume in 1 second (environmental tobacco smoke interaction)	10,817 European ancestry individuals	1,156 European ancestry individuals, 1,276 individuals	1p34.3	GRIK3	rs2859741-T	0.45	7E-6		59.0	[33.52-84.48] unit increase	Illumina [227981]	N
871	chr1	37521937	37521938	rs6687485	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p34.3	NR	rs6687485-?	NR	3E-7		0.0089822	[0.0056-0.0124] unit increase	Affymetrix [805426] (imputed)	N
872	chr1	37663142	37663143	rs215820	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215820-T	0.26	5E-6		1.010101	[-1.0479-3.0681]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37663171	37663172	rs12743241	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs12743241-A	0.26	4E-6		1.0309278	[-0.98787-3.04973]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37663817	37663818	rs215819	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215819-G	0.7	3E-6		1.04	[-0.9984-3.0784]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37666414	37666415	rs215818	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215818-A	0.7	2E-6		1.08	[-0.978-3.138]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37666967	37666968	rs215817	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215817-A	0.7	1E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37667067	37667068	rs215816	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215816-C	0.7	2E-6		1.08	[-0.978-3.138]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37667067	37667068	rs215816	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p34.3	NR	rs215816-A	0.297328184858168	2E-9		0.008622863	[0.0058-0.0114] unit increase	NR [NR]	N
872	chr1	37667107	37667108	rs215815	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215815-G	0.7	2E-6		1.01	[-1.1068-3.1268]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37667107	37667108	rs215815	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p34.3	NR	rs215815-A	0.299007681683826	2E-11		0.0067219986	[0.0048-0.0087] unit increase	NR [NR]	N
872	chr1	37667107	37667108	rs215815	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p34.3	NR	rs215815-A	0.299007681683826	6E-11		0.008152389	[0.0057-0.0106] unit increase	NR [NR]	N
872	chr1	37667107	37667108	rs215815	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p34.3	NR	rs215815-A	0.299007681683826	5E-11		0.010577068	[0.0074-0.0137] unit increase	NR [NR]	N
872	chr1	37667107	37667108	rs215815	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p34.3	NR	rs215815-A	0.299007681683826	4E-11		0.006789246	[0.0048-0.0088] unit increase	NR [NR]	N
872	chr1	37667515	37667516	rs215814	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215814-C	0.3	2E-6		1.098901	[-0.9787-3.1765]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37667892	37667893	rs215813	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215813-C	0.7	2E-6		1.07	[-0.988-3.128]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37668629	37668630	rs215811	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215811-T	0.3	2E-6		1.0752687	[-0.98273-3.13327]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37669007	37669008	rs215810	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215810-C	0.3	1E-6		1.0309278	[-1.00747-3.06933]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37669047	37669048	rs215809	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215809-T	0.7	1E-6		1.03	[-0.9888-3.0488]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37670068	37670069	rs215808	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215808-G	0.3	1E-6		1.010101	[-1.0087-3.0289]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37670101	37670102	rs215807	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215807-C	0.7	2E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37671072	37671073	rs215806	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215806-C	0.7	2E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37672579	37672580	rs629121	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs629121-A	0.7	1E-6		1.03	[-1.0084-3.0684]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37673387	37673388	rs2497991	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs2497991-A	0.7	1E-6		1.02	[-0.9988-3.0388]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37673609	37673610	rs2497990	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs2497990-C	0.3	1E-6		1.0309278	[-0.98787-3.04973]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37674653	37674654	rs215840	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215840-A	0.7	1E-6		1.08	[-0.978-3.138]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37675051	37675052	rs215842	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215842-T	0.3	2E-6		1.0752687	[-1.04153-3.19207]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37675433	37675434	rs150574	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs150574-A	0.71	1E-6		1.04	[-1.018-3.098]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37676778	37676779	rs215848	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215848-G	0.3	2E-6		1.0526316	[-1.00537-3.11063]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37677849	37677850	rs215851	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215851-A	0.7	2E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37678792	37678793	rs215853	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215853-G	0.7	2E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37680478	37680479	rs215857	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p34.3	NR	rs215857-T	0.7	1E-6		1.05	[-0.9688-3.0688]	Affymetrix [at least 143006] (imputed)	N
872	chr1	37709327	37709328	rs1466887	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p34.3	NR	rs1466887-C	0.4489	1E-8		1.0121458	[1.01-1.02]	NR [8098588] (imputed)	N
872	chr1	37725973	37725974	rs16823935	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.3	GRIK3	rs16823935-?	NR	7E-6	(hippuric acid)	0.35484576	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
872	chr1	37732092	37732093	rs914364	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p34.3	NR	rs914364-?	NR	3E-6		0.38219	[0.22-0.54] unit increase	NR [13958389] (imputed)	N
872	chr1	37744360	37744361	rs75036654	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	1p34.3	LINC01137	rs75036654-C	NR	5E-10	(Unclassified Acidaminococcaceae)	1.39	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
873	chr1	37752706	37752707	rs12041233	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p34.3	Intergenic	rs12041233-A	NR	6E-9	(between families)	5.825	unit increase	Affymetrix [up to 15107142] (imputed)	N
873	chr1	37792489	37792490	rs542754544	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	1p34.3	Intergenic	rs542754544-T		6E-8		0.519	[NR] unit decrease	Illumina [24111857] (imputed)	N
873	chr1	37814214	37814215	rs61778186	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs61778186-T	0.01045	7E-9	(IGHG3)	0.2085	NR unit increase	Illumina [1671387] (imputed)	N
873	chr1	37857461	37857462	rs4233210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.3	Intergenic	rs4233210-T	0.7159	2E-12	(MTAG)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
873	chr1	37857461	37857462	rs4233210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.3	Intergenic	rs4233210-T	0.7159	9E-10		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
873	chr1	37857461	37857462	rs4233210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.3	Intergenic	rs4233210-T	0.7159	3E-10	(MTAG)	0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
873	chr1	37857461	37857462	rs4233210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.3	Intergenic	rs4233210-T	0.7244	1E-11	(MTAG)	0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
873	chr1	37857461	37857462	rs4233210	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.3	NR	rs4233210-?	NR	2E-6		4.744	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
873	chr1	37865953	37865954	rs875361	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.3	NR	rs875361-G	0.456262	2E-8		0.035463765	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
873	chr1	37865953	37865954	rs875361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p34.3	Intergenic	rs875361-A	0.4561	2E-8		0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
873	chr1	37873590	37873591	rs190569784	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p34.3	intergenic	rs190569784-A	0.012	2E-6		0.165	[0.096-0.234] unit decrease	Affymetrix [7947838] (imputed)	N
874	chr1	37885818	37885819	rs76321756	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	1p34.3	Intergenic	rs76321756-C		2E-7	(men)	0.244	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
874	chr1	37917468	37917469	rs6704011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p34.3		rs6704011-C	NR	2E-12		0.0247	[0.018-0.032] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
874	chr1	37917468	37917469	rs6704011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.3	LINC01137	rs6704011-C	0.124306	3E-17		0.02828796	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr1	37928883	37928884	rs2811640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs2811640-A	0.525397	2E-19				Affymetrix, Illumina [22063850] (imputed)	N
874	chr1	37928883	37928884	rs2811640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs2811640-A	0.459407	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
874	chr1	37928883	37928884	rs2811640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p34.3	NR	rs2811640-A	0.524368	1E-12		0.013685	[0.0099-0.0175] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
874	chr1	37928883	37928884	rs2811640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs2811640-A	0.464884	2E-31				Affymetrix, Illumina [20825802] (imputed)	N
874	chr1	37931877	37931878	rs2245867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.3	LINC01137	rs2245867-G	0.525968	9E-14		0.016386798	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr1	37931877	37931878	rs2245867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p34.3	LINC01137	rs2245867-G	0.525947	1E-9		0.013488375	[0.0091-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr1	37937380	37937381	rs75778090	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	1p34.3		rs75778090-T	NR	5E-6		1.53		Illumina [7574753] (imputed)	N
874	chr1	37939172	37939173	rs2492301	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p34.3		rs2492301-T	0.471	6E-18		0.1	[0.07-0.12] % increase	Affymetrix [NR] (imputed)	N
874	chr1	37939172	37939173	rs2492301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.3	LINC01137	rs2492301-C	0.529845	3E-10		0.013930961	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
874	chr1	37939172	37939173	rs2492301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.3	LINC01137	rs2492301-C	0.529754	9E-28		0.0236536	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr1	37939172	37939173	rs2492301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs2492301-C	0.478885	3E-30				Affymetrix, Illumina [24246363] (imputed)	N
874	chr1	37939172	37939173	rs2492301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p34.3	NR	rs2492301-C	0.529787	7E-34		0.022256	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
874	chr1	37939172	37939173	rs2492301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p34.3	NR	rs2492301-C	0.529187	3E-34		0.02359	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
874	chr1	37939172	37939173	rs2492301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.3		rs2492301-?	NR	8E-19				NR [~ 8900000] (imputed)	N
874	chr1	37939172	37939173	rs2492301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.3		rs2492301-?	NR	6E-26				NR [~ 8900000] (imputed)	N
874	chr1	37939172	37939173	rs2492301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p34.3	LINC01137	rs2492301-C	0.5297	2E-11		0.02382152	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr1	37939172	37939173	rs2492301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p34.3	LINC01137	rs2492301-C	0.5296	9E-13		0.02542396	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr1	37939998	37939999	rs75785507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs75785507-A	0.41618	3E-13				Affymetrix, Illumina [24649327] (imputed)	N
874	chr1	37940356	37940357	rs2660566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.3		rs2660566-G	NR	3E-16		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
874	chr1	37940356	37940357	rs2660566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p34.3		rs2660566-G	NR	3E-17		0.0201	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
874	chr1	37940356	37940357	rs2660566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.3	ZC3H12A	rs2660566-G	0.526913	7E-18		0.019174313	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
874	chr1	37940356	37940357	rs2660566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p34.3	ZC3H12A	rs2660566-G	0.527034	4E-31		0.025731537	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr1	37940356	37940357	rs2660566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p34.3	NR	rs2660566-G	0.527773	6E-23		0.01933	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
874	chr1	37943088	37943089	rs12408993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs12408993-G	0.148184	1E-19				Affymetrix, Illumina [23467995] (imputed)	N
874	chr1	37943088	37943089	rs12408993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p34.3	NR	rs12408993-G	0.110757	1E-19		0.027598	[0.022-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
874	chr1	37958812	37958813	rs9253	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1p34.3	FLJ11730, BC016328	rs9253-?	0.18	4E-6	(RBCC)			Affymetrix [70897]	N
874	chr1	37964158	37964159	rs67246224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.3		rs67246224-?	NR	2E-9				NR [~ 8900000] (imputed)	N
874	chr1	37970296	37970297	rs138643189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.3		rs138643189-?	NR	4E-30				NR [~ 8900000] (imputed)	N
875	chr1	38026599	38026600	rs11577094	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p34.3	NA	rs11577094-T	0.0791	3E-10		0.0186	[0.013-0.024] unit increase	NR [~ 27400000] (imputed)	N
875	chr1	38028373	38028374	rs4653301	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p34.3	DNALI1	rs4653301-G	0.5484	1E-9		0.081	[0.054-0.108] unit decrease	Affymetrix [~ 11900000] (imputed)	N
875	chr1	38029149	38029150	rs2268695	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p34.3	DNALI1	rs2268695-G	0.8267	1E-10		0.113	[0.077-0.149] unit decrease	Affymetrix [~ 11900000] (imputed)	N
875	chr1	38036090	38036091	rs6700965	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1p34.3	NR	rs6700965-G		1E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
875	chr1	38052444	38052445	rs2294875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.3		rs2294875-?	NR	8E-12				NR [~ 8900000] (imputed)	N
875	chr1	38067651	38067652	rs141762164	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	1p34.3	Intergenic	rs141762164-G	0.024	3E-7		2.1261	[1.31-2.94] unit increase	Illumina [9520174] (imputed)	N
875	chr1	38073355	38073356	rs113998067	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	1p34.3	GNL2, RSP01	rs113998067-C	0.04265300000000005	3E-8		1.27	[1.17-1.38]	Affymetrix, Illumina [~ 11700000] (imputed)	N
875	chr1	38073355	38073356	rs113998067	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	1p34.3	GNL2, RSP01	rs113998067-C	0.04	4E-8		1.23	[1.14-1.32]	Affymetrix, Illumina [~ 11700000] (imputed)	N
875	chr1	38076620	38076621	rs10908363	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p34.3	RSPO1	rs10908363-T	NR	1E-6		0.0343	unit increase	Illumina [15409056] (imputed)	N
875	chr1	38082121	38082122	rs12039431	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	1p34.3	RSPO1	rs12039431-?	NR	1E-8		1.07	[1.03-1.11]	Illumina [up to 10962898] (imputed)	N
875	chr1	38082121	38082122	rs12039431	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	1p34.3	RSPO1	rs12039431-?	NR	1E-11	(Serous)	1.11	[1.07-1.16]	Illumina [up to 10962898] (imputed)	N
875	chr1	38091596	38091597	rs10796912	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1p34.3	RSPO1	rs10796912-G	0.56	1E-9				Affymetrix, Illumina [8002429] (imputed)	N
875	chr1	38092722	38092723	rs4074961	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	1p34.3		rs4074961-T	NR	8E-27		0.0229	[0.019-0.027] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
875	chr1	38092722	38092723	rs4074961	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	1p34.3		rs4074961-T	0.44	7E-100		0.022	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
875	chr1	38092722	38092723	rs4074961	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	1p34.3		rs4074961-T	0.43	6E-22		0.024	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
875	chr1	38092722	38092723	rs4074961	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	1p34.3		rs4074961-T	0.46	4E-10		0.019	mm increase	Affymetrix, Illumina [7861976] (imputed)	N
875	chr1	38092722	38092723	rs4074961	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1p34.3	RSPO1	rs4074961-?	NR	1E-9		0.0785	[0.053-0.104] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
875	chr1	38092722	38092723	rs4074961	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p34.3	RSPO1	rs4074961-C	0.564	4E-12		0.089	[0.064-0.114] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
875	chr1	38092722	38092723	rs4074961	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	1p34.3	C1orf109, RSPO1, SNIP1, EPHA10, GNL2, DNALI1, CDCA8	rs4074961-T	0.4361	4E-13		0.0728	[0.053-0.092] unit increase	Illumina [2500000] (imputed)	N
875	chr1	38096420	38096421	rs58722170	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	1p34.3	NR	rs58722170-C	0.220826	2E-7		1.099984	[1.06129080940929-1.14008804057615]	Illumina [11595112] (imputed)	N
875	chr1	38096420	38096421	rs58722170	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	1p34.3	NR	rs58722170-C	0.220826	8E-8		1.1063784	[1.06640418255445-1.14785110269475]	Illumina [11595112] (imputed)	N
875	chr1	38096420	38096421	rs58722170	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	1p34.3	NR	rs58722170-C	0.221	1E-9		1.1	[1.07-1.13]	Illumina [11595112] (imputed)	N
875	chr1	38121933	38121934	rs10908366	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Scoliosis in Charcot-Marie-Tooth disease 1A	91 European ancestry severe cases, 318 European ancestry mild cases	NA	1p34.3	NR	rs10908366-?		3E-6				Illumina [600000]	N
875	chr1	38121933	38121934	rs10908366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p34.3		rs10908366-?	NR	1E-9				NR [~ 8900000] (imputed)	N
875	chr1	38121933	38121934	rs10908366	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p34.3	NR	rs10908366-C	0.486843	2E-10		0.0196282	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
875	chr1	38121933	38121934	rs10908366	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	1p34.3	C1orf109, C1orf122, CDCA8, DNALI1, EPHA10, GNL2, INPP5B, LINC01137, MANEAL, MEAF6, MIR5581, MIR6732, MTF1, RSPO1, SNIP1, YRDC, ZC3H12A	rs10908366-?	NR	7E-6				Illumina [9143600] (imputed)	N
875	chr1	38136827	38136828	rs115316836	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	1p34.3	NR	rs115316836-?	NR	8E-6		8.3716	[0.13-16.61] unit decrease	Illumina [at least 560000] (imputed)	N
876	chr1	38233398	38233399	rs482818	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.3	Intergenic	rs482818-C	0.4476	4E-10	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
876	chr1	38238902	38238903	rs2763041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.3	Intergenic	rs2763041-A	0.5393	3E-10	(MTAG)	0.0083	[0.0058-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
876	chr1	38240900	38240901	rs476012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p34.3	ACTN4P2	rs476012-A	0.522766	1E-10		0.0141842365	[0.0099-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr1	38240900	38240901	rs476012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p34.3	ACTN4P2	rs476012-A	0.522756	6E-10		0.013655356	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr1	38240900	38240901	rs476012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs476012-A	0.541625	6E-10				Affymetrix, Illumina [19872809] (imputed)	N
876	chr1	38240900	38240901	rs476012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p34.3	NR	rs476012-A	0.523494	4E-10		0.012401	[0.0085-0.0163] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
876	chr1	38247152	38247153	rs12117544	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	1p34.3	RP11-109P14.2	rs12117544-?	NR	8E-6	(Colorword)			Illumina [up to 563855]	N
876	chr1	38258006	38258007	rs12030690	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.3	Intergenic	rs12030690-C	0.261	2E-11	(MTAG)	0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
876	chr1	38258006	38258007	rs12030690	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.3	Intergenic	rs12030690-G	0.739	8E-10		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
876	chr1	38268796	38268797	rs14614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein INPP5B	5,365 Icelandic ancestry individuals	NA	1p34.3		rs14614-G	0.1338	2E-104		0.578874	[0.53-0.63] unit decrease	Illumina [7506463] (imputed)	N
877	chr1	38276996	38276997	rs28411034	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p34.3	MTF1	rs28411034-A	NR	6E-6		0.866	[0.8-0.93]	NR [NR] (imputed)	N
877	chr1	38276996	38276997	rs28411034	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p34.3	MTF1	rs28411034-A	NR	2E-10		0.86	[0.81-0.91]	Illumina [NR] (imputed)	N
877	chr1	38276996	38276997	rs28411034	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1p34.3	MTF1	rs28411034-A	NR	6E-6		0.859	[0.79-0.92]	Illumina [5719137] (imputed)	N
877	chr1	38278578	38278579	rs28411352	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1p34.3		rs28411352-T	NR	2E-11		1.1	[1.07-1.13]	NR [13810676] (imputed)	N
877	chr1	38278578	38278579	rs28411352	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p34.3	MTF1, INPP5B	rs28411352-T	NR	6E-12		0.110285	[0.079-0.141] unit increase	Illumina [8380626] (imputed)	N
877	chr1	38278578	38278579	rs28411352	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p34.3	MTF1, INPP5B	rs28411352-T	0.25	5E-9	(EA)	0.10876	[0.072-0.145] unit increase	Illumina [8380626] (imputed)	N
877	chr1	38278578	38278579	rs28411352	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	MTF1, INPP5B	rs28411352-T	0.25	6E-9	(EA)	1.1	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
877	chr1	38278578	38278579	rs28411352	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	MTF1, INPP5B	rs28411352-T	0.25	3E-12		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
877	chr1	38279986	38279987	rs3748682	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	1p34.3	MTF1	rs3748682-?	NR	7E-6				Illumina [13676411] (imputed)	N
877	chr1	38279986	38279987	rs3748682	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	1p34.3	MTF1	rs3748682-T	0.749	9E-6		1.19	[1.10-1.28]	Illumina [870065]	N
877	chr1	38294625	38294626	rs28544343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p34.3		rs28544343-?	NR	5E-10				NR [~ 8900000] (imputed)	N
877	chr1	38294796	38294797	rs34618286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.3	MTF1	rs34618286-C	0.601246	1E-10		0.014745266	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr1	38295141	38295141	rs141016063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p34.3		rs141016063-AT	NR	5E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
877	chr1	38298206	38298207	rs9729719	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.3	MTF1	rs9729719-G		7E-10		0.247	unit decrease	Affymetrix [at least 2696785] (imputed)	N
877	chr1	38298206	38298207	rs9729719	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.3	MTF1	rs9729719-G		1E-7	(EA)	0.233	unit decrease	Affymetrix [at least 2696785] (imputed)	N
877	chr1	38298206	38298207	rs9729719	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p34.3	MTF1	rs9729719-G		2E-11		0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
877	chr1	38306355	38306356	rs61778082	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.3	INPP5B	rs61778082-T	0.86546875	2E-55	(INPP5B, 12641_3_3)	0.5470326	[0.48-0.61] unit increase	Illumina [> 1000000] (imputed)	N
877	chr1	38318308	38318308	rs35724646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p34.3		rs35724646-CT	NR	3E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
877	chr1	38334576	38334577	rs61776663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.3		rs61776663-?	NR	2E-10				NR [~ 8900000] (imputed)	N
877	chr1	38347416	38347417	rs12742756	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1p34.3	INPP5B	rs12742756-G	0.428204	4E-8		0.08310696	[0.054-0.113] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
877	chr1	38358175	38358176	rs142304587	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		INPP5B	rs142304587-?	NR	5E-9	(female)	0.577354	[NR] unit increase	Affymetrix [NR] (imputed)	N
877	chr1	38372797	38372798	rs11485999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p34.3		rs11485999-A	NR	6E-12		0.0604	[0.043-0.078] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
877	chr1	38377020	38377021	rs61776678	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p34.3	INPP5B	rs61776678-G	0.596	2E-10		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
877	chr1	38377020	38377021	rs61776678	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p34.3	INPP5B	rs61776678-A	0.410504	3E-11		0.061821666	[0.044-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
877	chr1	38377020	38377021	rs61776678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p34.3		rs61776678-?	NR	2E-10				NR [~ 8900000] (imputed)	N
877	chr1	38397368	38397369	rs35267671	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p34.3	INPP5B, LOC105378651	rs35267671-T	0.546006	4E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
877	chr1	38397368	38397369	rs35267671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.3	INPP5B	rs35267671-C	0.413347	1E-10		0.014354506	[0.01-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
877	chr1	38399815	38399816	rs28605759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p34.3		rs28605759-A	NR	7E-9		0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
878	chr1	38409072	38409073	rs28673728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p34.3		rs28673728-G	0.435687	3E-12		0.0140531	[0.01-0.018] unit decrease	Illumina [13479295] (imputed)	N
878	chr1	38409072	38409073	rs28673728	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p34.3	INPP5B	rs28673728-?	NR	2E-12		0.0201648	[0.015-0.026] unit decrease	Illumina [27896057] (imputed)	N
878	chr1	38409072	38409073	rs28673728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p34.3	INPP5B	rs28673728-G	0.4686	6E-9		0.02073629	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
878	chr1	38411444	38411445	rs871524	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p34.3	INPP5B	rs871524-A	0.329	2E-9	(EA, initial)	0.379	[0.26-0.5] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
878	chr1	38411444	38411445	rs871524	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p34.3	INPP5B	rs871524-A	0.329	1E-11		0.228	[0.16-0.29] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
878	chr1	38416309	38416310	rs72661887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p34.3		rs72661887-?	NR	4E-12				NR [~ 8900000] (imputed)	N
878	chr1	38426353	38426354	rs28585598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p34.3		rs28585598-A	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
878	chr1	38449162	38449163	rs12569027	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.3	SF3A3	rs12569027-T	0.4106	2E-8		0.196	[0.13-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
878	chr1	38455890	38455891	rs4360494	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.3	SF3A3	rs4360494-C	0.5541	8E-26		0.0198	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
878	chr1	38455890	38455891	rs4360494	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p34.3	SF3A3	rs4360494-G	0.443737	4E-29		0.0206899	[0.017-0.024] unit decrease	NR [13737936] (imputed)	N
878	chr1	38455890	38455891	rs4360494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.3		rs4360494-?	NR	2E-10				NR [~ 8900000] (imputed)	N
878	chr1	38455890	38455891	rs4360494	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	1p34.3	NR	rs4360494-G	0.4654	4E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
878	chr1	38455890	38455891	rs4360494	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p34.3		rs4360494-?	NR	3E-22		0.0200841	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
878	chr1	38455890	38455891	rs4360494	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p34.3	SF3A3	rs4360494-G	0.446592	8E-10		0.0200062	[0.013-0.027] unit decrease	NR [17166351] (imputed)	N
878	chr1	38455890	38455891	rs4360494	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p34.3	SF3A3	rs4360494-C	0.5458	2E-6		0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
878	chr1	38455890	38455891	rs4360494	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p34.3	SF3A3	rs4360494-C	0.55	4E-16		0.278	[0.22-0.34] unit increase	Affymetrix [~ 9800000] (imputed)	N
878	chr1	38456105	38456106	rs4072980	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p34.3	FHL3, SF3A3	rs4072980-A	0.4303	4E-10		0.0326	[0.022-0.043] unit decrease	Affymetrix [at least 7947838] (imputed)	N
878	chr1	38456105	38456106	rs4072980	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p34.3	FHL3, SF3A3	rs4072980-A	0.433	7E-10		0.0353	[0.024-0.046] unit decrease	NR [8041861] (imputed)	N
878	chr1	38458019	38458020	rs67963450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p34.3		rs67963450-T	NR	1E-30		0.0251	[0.021-0.029] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
878	chr1	38461318	38461319	rs61776719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p34.3		rs61776719-A	NR	2E-34		0.0157	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
878	chr1	38461318	38461319	rs61776719	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p34.3	SF3A3, FHL3	rs61776719-?	NR	9E-14		0.0378542	[0.028-0.048] unit increase	Illumina [4804024] (imputed)	N
878	chr1	38461318	38461319	rs61776719	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	1p34.3	NR	rs61776719-C	0.45	2E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
878	chr1	38461318	38461319	rs61776719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.3		rs61776719-?	NR	5E-44				NR [~ 8900000] (imputed)	N
878	chr1	38461318	38461319	rs61776719	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p34.3	FHL3, SF3A3	rs61776719-A	0.53	1E-9		0.041	[0.027-0.055] unit increase	Affymetrix [7947838] (imputed)	N
878	chr1	38461820	38461821	rs67631072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p34.3		rs67631072-?	NR	6E-32				NR [~ 8900000] (imputed)	N
878	chr1	38461820	38461821	rs67631072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p34.3		rs67631072-?	NR	3E-12				NR [~ 8900000] (imputed)	N
878	chr1	38461820	38461821	rs67631072	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.3	FHL3	rs67631072-T	0.5008	2E-20		0.2351	[0.19-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
878	chr1	38461820	38461821	rs67631072	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p34.3	NR	rs67631072-C	0.446498	2E-15		0.0244712	[0.018-0.03] unit decrease	NR [19129689] (imputed)	N
878	chr1	38463503	38463504	rs7366048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.3	NR	rs7366048-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
878	chr1	38465314	38465315	rs4634868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.3		rs4634868-?	NR	8E-9				NR [~ 8900000] (imputed)	N
878	chr1	38465314	38465315	rs4634868	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.3	NR	rs4634868-?	NR	8E-6		4.475	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
878	chr1	38510533	38510533	rs113103101	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		POU3F1	rs113103101-?	NR	2E-10	(male)	4.85557	[NR] unit increase	Affymetrix [NR] (imputed)	N
878	chr1	38519284	38519285	rs190519086	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL139158.2	rs190519086-?	NR	2E-10	(male)	4.87321	[NR] unit increase	Affymetrix [NR] (imputed)	N
879	chr1	38555025	38555026	rs6671895	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	1p34.3	RP5-884C9.2	rs6671895-T	NR	1E-6		4.3219	[3.73-4.91]	Illumina [7225561] (imputed)	N
879	chr1	38565601	38565601	rs3069738	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	1p34.3	NR	rs3069738-G	0.329	6E-7		0.1619	[0.099-0.225] unit decrease	Illumina [10677593] (imputed)	N
879	chr1	38602072	38602073	rs7547921	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p34.3	POU3F1	rs7547921-A	0.09	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
879	chr1	38616870	38616871	rs883220	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1p34.3	POU3F1	rs883220-C	0.76	2E-8		1.1235955	[1.08-1.16]	Illumina [133816] (imputed)	N
879	chr1	38616870	38616871	rs883220	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p34.3	POU3F1	rs883220-?	0.74	2E-8		1.1235955	(Immunochip only)	Illumina [129464] (imputed)	N
879	chr1	38616870	38616871	rs883220	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	1p34.3	POU3F1	rs883220-?	0.74	1E-7				Illumina [129464] (imputed)	N
879	chr1	38624128	38624129	rs12131057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p34.3	NR	rs12131057-A	NR	8E-12		0.0194	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
879	chr1	38624128	38624129	rs12131057	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p34.3	POU3F1	rs12131057-G	0.76	4E-7		1.16	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
879	chr1	38633878	38633879	rs12140275	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p34.3	LOC339442	rs12140275-A	NR	4E-7		0.0924969	[0.057-0.128] unit increase	Illumina [8380626] (imputed)	N
879	chr1	38633878	38633879	rs12140275	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p34.3	LOC339442	rs12140275-A	0.75	4E-7	(EA)	0.09364	[0.058-0.13] unit increase	Illumina [8380626] (imputed)	N
879	chr1	38633878	38633879	rs12140275	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	LOC339442	rs12140275-A	0.81	2E-9		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
879	chr1	38633878	38633879	rs12140275	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p34.3	LOC339442	rs12140275-A	0.75	4E-9	(EA)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
879	chr1	38650751	38650752	rs61778692	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p34.3	RP11-214L19.1	rs61778692-G	0.245765	5E-10		0.06572884	[0.045-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
879	chr1	38651780	38651781	rs61778693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p34.3		rs61778693-?	NR	6E-9				NR [~ 8900000] (imputed)	N
880	chr1	38721662	38721663	rs11802770	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	1p34.3	POU3F1, LOC400750	rs11802770-T	NR	3E-6	(ever vs never smoking)	0.01	[NR] unit increase	Affymetrix [706791]	N
880	chr1	38734880	38734881	rs77633398	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1p34.3	intergenic	rs77633398-A	0.0025	8E-6		12.84815	NR	Affymetrix, Illumina [30341632] (imputed)	N
880	chr1	38757236	38757237	rs2637869	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p34.3	NR	rs2637869-A	0.297	9E-13		0.00844515	[0.0061-0.0108] unit increase	NR [9732723] (imputed)	N
880	chr1	38757236	38757237	rs2637869	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p34.3	NR	rs2637869-A	0.297	7E-11		0.018220138	[0.013-0.024] unit increase	NR [~ 10000000] (imputed)	N
880	chr1	38767435	38767437	rs200991156	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p34.3	NR	rs200991156-?	NR	8E-6	(male)	0.1303	[0.073-0.188] unit decrease	Illumina [11133794] (imputed)	N
880	chr1	38767436	38767437	rs202025882	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p34.3	NR	rs202025882-?	NR	6E-6	(male)	0.1345	[0.076-0.193] unit decrease	Illumina [11133794] (imputed)	N
880	chr1	38782384	38782385	rs1799687	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p34.3	NR	rs1799687-A	NR	7E-6	(male)	0.1131	[0.064-0.162] unit increase	Illumina [11133794] (imputed)	N
881	chr1	38850338	38850339	rs4266846	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	1p34.3	LOC105378657	rs4266846-?	NR	1E-6			NR	Illumina [up to 317503]	N
882	chr1	38954368	38954369	rs113243610	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	1p34.3	Intergenic	rs113243610-GA	0.337758571	7E-6		0.157819	unit decrease	Illumina [6969139] (imputed)	N
882	chr1	38994114	38994115	rs11590421	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1p34.3	LOC400750	rs11590421-?		2E-7				Illumina [859311]	N
882	chr1	39050017	39050018	rs74064255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p34.3	RP11-329N22.1	rs74064255-C	0.0029	9E-6		0.5056	[0.28-0.73] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
882	chr1	39050017	39050018	rs74064255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p34.3	RP11-329N22.1	rs74064255-C	0.0029	9E-6		0.5056	[0.28-0.73] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
883	chr1	39084836	39084837	rs74064266	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	1p34.3		rs74064266-A	0.08	6E-7		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
883	chr1	39115622	39115623	rs12144138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p34.3	Intergenic	rs12144138-C	0.9191	3E-13		0.0304	[0.022-0.039] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
883	chr1	39121674	39121675	rs12117826	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.3	Intergenic	rs12117826-A	0.0809	2E-11	(MTAG)	0.0202	[0.014-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr1	39140253	39140254	rs912783	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.3	Intergenic	rs912783-A	0.3744	6E-11	(MTAG)	0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr1	39140253	39140254	rs912783	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.3	Intergenic	rs912783-T	0.6256	9E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
884	chr1	39221757	39221758	rs78264562	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Kineothrix abundance in stool	5,959 Finnish ancestry individuals	NA	1p34.3		rs78264562-A	0.0438715	4E-8		0.0711039	[0.046-0.097] unit decrease	Illumina [7980478] (imputed)	N
884	chr1	39276264	39276265	rs75028545	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1p34.3		rs75028545-?	NR	4E-8		1.4973	[0.97-2.03] unit decrease	Affymetrix [NR] (imputed)	N
884	chr1	39284433	39284434	rs77768193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.3	Intergenic	rs77768193-T	0.9253	3E-10	(MTAG)	0.0214	[0.015-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
884	chr1	39284433	39284434	rs77768193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.3	Intergenic	rs77768193-T	0.9253	1E-11		0.0252	[0.018-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
884	chr1	39290058	39290059	rs6681493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p34.3	NR	rs6681493-T	NR	1E-9		0.0274	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
884	chr1	39291707	39291708	rs6690335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.3	NR	rs6690335-G	0.226389	2E-15		0.020962082	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
884	chr1	39291707	39291708	rs6690335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.3		rs6690335-G	0.226382	8E-12		0.018135358	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
884	chr1	39291707	39291708	rs6690335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.3	NR	rs6690335-G	0.226403	1E-18		0.019541	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
884	chr1	39291707	39291708	rs6690335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs6690335-G	0.246309	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
884	chr1	39291707	39291708	rs6690335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p34.3	NR	rs6690335-G	0.226567	6E-15		0.017975	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
884	chr1	39291707	39291708	rs6690335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.3		rs6690335-?	NR	3E-12				NR [~ 8900000] (imputed)	N
884	chr1	39296299	39296300	rs9439074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.3	Intergenic	rs9439074-A	0.5336	4E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
884	chr1	39299422	39299423	rs4147108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p34.3		rs4147108-G	NR	5E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
884	chr1	39299422	39299423	rs4147108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.3		rs4147108-G	NR	2E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
884	chr1	39299422	39299423	rs4147108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs4147108-G	0.254718	6E-16				Affymetrix, Illumina [24649327] (imputed)	N
885	chr1	39333774	39333775	rs1886748	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	1p34.3	NR	rs1886748-?	NR	7E-10	(HAI-1)	0.2	[0.14-0.26] unit decrease	Illumina [4020654] (imputed)	N
885	chr1	39339681	39339682	rs4494114	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p34.3	RP5-864K19.6, GJA9, RHBDL2, RRAGC, RP5-864K19.7, MYCBP, RP5-864K19.4	rs4494114-C	0.4447236	2E-20	(Kunitz-type protease inhibitor 1)	0.3993	[0.32-0.48] unit decrease	Affymetrix [509946]	N
885	chr1	39344054	39344055	rs9439082	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.3	GJA9	rs9439082-A	0.46	1E-47	(Kunitz-type protease inhibitor 1, SPINT1.2828.82.2)	0.35	[0.31-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
885	chr1	39344878	39344879	rs9438973	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINT1	5,357 Icelandic ancestry individuals	NA	1p34.3		rs9438973-A	0.4429	2E-88		0.34547	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
885	chr1	39363293	39363294	rs61780049	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p34.3	RHBDL2	rs61780049-A	0.851141	3E-8		0.0154776	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
885	chr1	39364616	39364617	rs4970634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1p34.3		rs4970634-?	NR	6E-27				NR [~ 8900000] (imputed)	N
885	chr1	39380384	39380385	rs4246511	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	1p34.3	RHBDL2, MYCBP	rs4246511-C	0.71	5E-21		0.22	[0.18-0.26] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
885	chr1	39380384	39380385	rs4246511	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	1p34.3	RHBDL2	rs4246511-T	0.271	9E-17		0.24	[0.18-0.3] years increase	Affymetrix, Illumina [2551160] (imputed)	N
885	chr1	39388782	39388783	rs11800365	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	1p34.3	RHBDL2	rs11800365-A	0.264556	7E-6		1.457	[1.236 - 1.717]	Illumina [5396854] (imputed)	N
885	chr1	39393030	39393031	rs2094081	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	1p34.3	intergenic	rs2094081-G	NR	4E-7	(EA)	1.519	unit decrease	Illumina [at least 5086170] (imputed)	N
885	chr1	39415977	39415978	rs7416141	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1p34.3	RHBDL2	rs7416141-G	0.9419	2E-6		0.0189	[0.011-0.027] unit increase	Affymetrix [~ 7740000] (imputed)	N
885	chr1	39451487	39451488	rs4329504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p34.3		rs4329504-G	0.4207	5E-11		0.014635243	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr1	39451487	39451488	rs4329504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs4329504-G	0.36657	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
885	chr1	39451487	39451488	rs4329504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p34.3	NR	rs4329504-G	0.419341	5E-12		0.013235	[0.0095-0.017] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
886	chr1	39453784	39453785	rs34848020	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1p34.3	NR	rs34848020-?	NR	1E-11				Affymetrix, Illumina [6211246] (imputed)	N
886	chr1	39457005	39457006	rs12043492	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1p34.3	NR	rs12043492-T	0.4212	5E-12		0.2166	[0.16-0.28] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
886	chr1	39473796	39473797	rs11205539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs11205539-A	0.17014	3E-10				Affymetrix, Illumina [19872809] (imputed)	N
886	chr1	39534946	39534947	rs6665962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.3	NR	rs6665962-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
886	chr1	39539042	39539043	rs12135478	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p34.3	NR	rs12135478-G	0.33102600000000004	9E-9		0.0150944	[0.0098-0.0204] unit increase	Affymetrix [16585745] (imputed)	N
886	chr1	39550620	39550621	rs7546735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p34.3	NR	rs7546735-C	NR	2E-14		0.0217	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
886	chr1	39550620	39550621	rs7546735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p34.3	NR	rs7546735-C	NR	1E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
886	chr1	39550620	39550621	rs7546735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p34.3	NR	rs7546735-C	NR	5E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
886	chr1	39551487	39551488	rs72634501	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs72634501-T	NR	3E-9		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
886	chr1	39551487	39551488	rs72634501	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs72634501-T	0.785	4E-8	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
886	chr1	39551487	39551488	rs72634501	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	1p34.3	MACF1, PABPC4	rs72634501-T	0.77	8E-10		0.044	[0.03-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
886	chr1	39557809	39557810	rs6684877	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	1p34.3	AKIRIN1, GJA9, GJA9-MYCBP, MACF1, MYCBP, NDUFS5, RHBDL2, RRAGC	rs6684877-?	NR	8E-6				Illumina [9143600] (imputed)	N
886	chr1	39562626	39562627	rs112566467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.3	NR	rs112566467-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
886	chr1	39562626	39562627	rs112566467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p34.3		rs112566467-?	NR	2E-15				NR [~ 8900000] (imputed)	N
886	chr1	39562626	39562627	rs112566467	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p34.3	NA	rs112566467-T	0.2071	6E-15		0.0184	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
886	chr1	39562626	39562627	rs112566467	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p34.3	NA	rs112566467-T	0.2071	6E-15		0.0184	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
886	chr1	39569570	39569571	rs2282231	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	NR	rs2282231-G	0.22	2E-6	(EA)	3.07	[2.58-3.56]	Illumina [905956]	N
886	chr1	39575981	39575982	rs2036465	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1p34.3	MACF1	rs2036465-C	NR	4E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix [9304965] (imputed)	N
887	chr1	39599879	39599879	rs369943525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.3	MACF1	rs369943525-AT	0.70163	4E-13		0.01792402	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
887	chr1	39602754	39602755	rs67916282	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p34.3		rs67916282-T	0.785189	5E-11		0.0314661	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
887	chr1	39602754	39602755	rs67916282	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p34.3		rs67916282-T	0.785189	2E-9		0.0286059	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
887	chr1	39602754	39602755	rs67916282	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p34.3		rs67916282-A	0.2	2E-30		11.45	z score increase	Affymetrix [9061022] (imputed)	N
887	chr1	39609783	39609784	rs12043260	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	1p34.3	PABPC4	rs12043260-?	NR	1E-10		0.005041	[0.0031-0.007] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
887	chr1	39611191	39611191	rs537182386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p34.3		rs537182386-C,rs537182386-C	0.765852	4E-8		0.0259483	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr1	39611191	39611191	rs537182386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p34.3		rs537182386-C,rs537182386-C	0.765852	4E-8		0.0259483	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr1	39611191	39611191	rs537182386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p34.3		rs537182386-C,rs537182386-C	0.765711	4E-8		0.0257163	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
887	chr1	39611191	39611191	rs537182386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p34.3		rs537182386-C,rs537182386-C	0.765711	4E-8		0.0257163	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
887	chr1	39616689	39616690	rs67062906	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p34.3	NR	rs67062906-G	0.209	5E-16				NR [9056863] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	9E-9		0.0274656	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-9		0.0288587	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	7E-11		0.0322477	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-13		0.0357765	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-14		0.0367391	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-8		0.026705	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	8E-9		0.0276903	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-10		0.0302138	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	2E-14		0.0365775	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	3E-12		0.0329495	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786379	2E-10		0.0321027	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	1E-15		0.0392981	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	1E-11		0.0322725	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
887	chr1	39618555	39618556	rs67408364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p34.3		rs67408364-A	0.786383	4E-16		0.0399905	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
887	chr1	39620393	39620393	rs571945370	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p34.3		rs571945370-A,rs571945370-A	0.797782	5E-13		0.0377344	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
887	chr1	39620393	39620393	rs571945370	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p34.3		rs571945370-A,rs571945370-A	0.797782	5E-13		0.0377344	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
887	chr1	39622587	39622588	rs67758468	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p34.3	MACF1	rs67758468-A	0.763703	2E-11		0.0144523	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
887	chr1	39644066	39644067	rs560372	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.3	NR	rs560372-A	0.01045	6E-10	(NIPSNAP1)	0.4372	NR unit increase	Illumina [1671387] (imputed)	N
887	chr1	39654371	39654372	rs57214150	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p34.3	MACF1	rs57214150-C	0.2114	4E-14		0.5926	[0.44-0.75] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
887	chr1	39656072	39656073	rs12076577	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p34.3		rs12076577-G	0.26577	2E-11		0.0318455	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
887	chr1	39660013	39660037	rs578140018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p34.3		rs578140018-C	NR	1E-18		0.0232	[0.018-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
887	chr1	39662601	39662602	rs115236337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p34.3	NR	rs115236337-T	NR	2E-15		0.0399	[0.03-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr1	39662601	39662602	rs115236337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p34.3	NR	rs115236337-T	NR	1E-11		0.0329	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
887	chr1	39662601	39662602	rs115236337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p34.3	NR	rs115236337-T	NR	1E-11		0.0343	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr1	39667739	39667740	rs2484135	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	1p34.3	MACF1	rs2484135-?	NR	5E-6	(EA)			Illumina [7205781] (imputed)	N
887	chr1	39672544	39672545	rs17491275	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1p34.3		rs17491275-G	0.16	3E-19		0.023	mmol/L increase	NR [NR] (imputed)	N
887	chr1	39672544	39672545	rs17491275	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	1p34.3		rs17491275-G	0.16	5E-28		0.028	nmol/L decrease	NR [NR] (imputed)	N
887	chr1	39672544	39672545	rs17491275	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p34.3		rs17491275-G	0.16	3E-15				NR [NR] (imputed)	N
887	chr1	39672544	39672545	rs17491275	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1p34.3		rs17491275-G	0.16	1E-52		0.037	mmol/L decrease	NR [NR] (imputed)	N
887	chr1	39672544	39672545	rs17491275	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p34.3		rs17491275-G	0.16	4E-8		0.011	% increase	NR [NR] (imputed)	N
887	chr1	39672544	39672545	rs17491275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.3		rs17491275-?	NR	1E-7				NR [~ 8900000] (imputed)	N
887	chr1	39684640	39684641	rs145863291	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.3	NR	rs145863291-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
887	chr1	39698436	39698437	rs80093081	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	1p34.3	NR	rs80093081-T	NR	1E-6		0.006998	[0.0041-0.0099] unit increase	NR [11010159] (imputed)	N
887	chr1	39698436	39698437	rs80093081	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	1p34.3	NR	rs80093081-T	NR	2E-8		0.00632075	[0.0041-0.0085] unit increase	NR [11010159] (imputed)	N
887	chr1	39698436	39698437	rs80093081	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	1p34.3	NR	rs80093081-T	NR	5E-7	(adjusted for BMI)	0.005527	[0.0033-0.0077] unit increase	NR [11010159] (imputed)	N
887	chr1	39714237	39714238	rs11205823	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1p34.3	MACF1	rs11205823-A	0.7117	2E-10		0.02440408	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
888	chr1	39716844	39716844	rs144209197	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p34.3		rs144209197-?,rs144209197-?	NR	1E-11				NR [9705931] (imputed)	N
888	chr1	39716844	39716844	rs144209197	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p34.3		rs144209197-?,rs144209197-?	NR	1E-11				NR [9705931] (imputed)	N
888	chr1	39719518	39719519	rs16826012	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Ventral thalamic nuclei volume	30,114 white British ancestry individuals			MACF1, RP11-420K8.1	rs16826012-C	0.1649	1E-9		0.0677215	[0.046-0.089] unit increase	Affymetrix [8165723] (imputed)	N
888	chr1	39731549	39731550	rs4660214	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	MACF1	rs4660214-G	0.22	1E-6	(EA)	3.08	[2.61-3.55]	Illumina [905956]	N
888	chr1	39777158	39777159	rs61783378	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p34.3		rs61783378-A	0.19	2E-19		9.02	z score increase	Affymetrix [9061022] (imputed)	N
888	chr1	39792368	39792369	rs111745074	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p34.3	NR	rs111745074-T	0.2105	1E-8		0.001546	[0.001-0.0021] unit decrease	Affymetrix [NR] (imputed)	N
888	chr1	39797054	39797055	rs16826069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p34.3		rs16826069-G	NR	3E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
888	chr1	39797054	39797055	rs16826069	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	1p34.3	MACF1	rs16826069-G	0.221	9E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
888	chr1	39797054	39797055	rs16826069	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	1p34.3	MACF1	rs16826069-G	0.212	7E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [247470]	N
888	chr1	39797054	39797055	rs16826069	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	1p34.3	MACF1	rs16826069-G	0.221	9E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [247470]	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	1E-14		0.0227	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	5E-16		0.0251	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	5E-12		0.0213	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	2E-13		0.0216	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	2E-18		0.0269	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	6E-45		0.0433	[0.037-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	4E-12		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	7E-10		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	5E-20		0.027	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
888	chr1	39801814	39801815	rs41270807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p34.3	NR	rs41270807-C	NR	3E-38		0.0399	[0.034-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr1	39809986	39809987	rs7528276	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	1p34.3	MACF1	rs7528276-T	0.03	3E-7		1.86	[1.47-2.36]	Illumina [9875636] (imputed)	N
888	chr1	39820309	39820310	rs61779275	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p34.3	NR	rs61779275-C	0.7804	3E-43		0.0753	[0.065-0.086] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
888	chr1	39823158	39823159	rs142179968	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	1p34.3	MACF1	rs142179968-C	0.002	2E-6		0.215	[0.13-0.3] unit increase	Illumina [at least 81396]	N
888	chr1	39831232	39831233	rs74786007	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	1p34.3	NR	rs74786007-A	0.005	1E-8	(Unifrac metric)	5.5663137	NR z-score increase	Illumina [5293637] (imputed)	N
888	chr1	39835816	39835817	rs2296172	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p34.3	MACF1, KIAA0754, BMP8A, PABPC4	rs2296172-?		9E-11				NR [7428630] (imputed)	N
888	chr1	39835816	39835817	rs2296172	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p34.3	NR	rs2296172-A	NR	1E-6		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
888	chr1	39835816	39835817	rs2296172	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	1p34.3	MACF1	rs2296172-G	0.193	7E-16		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
888	chr1	39835816	39835817	rs2296172	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p34.3	MACF1	rs2296172-G	0.20450000000000002	4E-11		0.0147	[0.01-0.019] unit increase	Illumina [246328]	N
888	chr1	39835816	39835817	rs2296172	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1p34.3	MACF1	rs2296172-G	0.1948	6E-7		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [NR] (imputed)	N
888	chr1	39835816	39835817	rs2296172	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1p34.3	MACF1	rs2296172-G	0.1948	3E-6	(EA)	0.0581	[0.034-0.083] unit increase	Affymetrix, Illumina [NR] (imputed)	N
888	chr1	39835816	39835817	rs2296172	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1p34.3	PABPC4	rs2296172-A	0.806	2E-19	(Trans-ethnic initial)	0.0365	[0.028-0.045] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
888	chr1	39835816	39835817	rs2296172	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	MACF1	rs2296172-G	0.22	1E-6	(EA)	3.08	[2.61-3.55]	Illumina [905956]	N
888	chr1	39840303	39840304	rs61779282	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p34.3	NR	rs61779282-G	0.162289	1E-9		0.0557619	[0.038-0.074] unit increase	Affymetrix [17914406] (imputed)	N
889	chr1	39855176	39855177	rs61779284	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p34.3	NR	rs61779284-G	0.7976	1E-48		0.0703	[0.061-0.08] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
889	chr1	39857191	39857192	rs3768299	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p34.3	NR	rs3768299-A	0.207	2E-16				NR [9056863] (imputed)	N
889	chr1	39859516	39859518	rs771435780	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p34.3	NR	rs771435780-G	0.717153	3E-20		0.0112231	[0.0087-0.0137] unit increase	Affymetrix [16582621] (imputed)	N
889	chr1	39859516	39859518	rs771435780	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p34.3	NR	rs771435780-G	0.717153	1E-19		0.012248	[0.0096-0.0149] unit increase	Affymetrix [16582614] (imputed)	N
889	chr1	39869512	39869512	rs200234036	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p34.3		rs200234036-GC	0.728	7E-22		0.12	[0.1-0.15] % increase	Affymetrix [NR] (imputed)	N
889	chr1	39880891	39880892	rs77157953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p34.3	NR	rs77157953-A	NR	1E-9		0.0363	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
889	chr1	39880891	39880892	rs77157953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p34.3	NR	rs77157953-A	NR	3E-10		0.0376	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
889	chr1	39892773	39892774	rs1180384	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p34.3		rs1180384-T	0.697549	3E-9		0.0256419	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
889	chr1	39893092	39893093	rs625384	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1p34.3		rs625384-C	0.698118	5E-10		0.0265631	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
889	chr1	39905872	39905873	rs4660751	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p34.3		rs4660751-T	0.19	6E-13		7.19	z score increase	Affymetrix [9061022] (imputed)	N
889	chr1	39913350	39913351	rs2296173	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1p34.3	MACF1	rs2296173-G	0.212010575612847	8E-14		0.065	[0.048-0.082] unit increase	NR [5035015] (imputed)	N
889	chr1	39922425	39922426	rs61779306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p34.3		rs61779306-A	NR	8E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
889	chr1	39922883	39922884	rs599892	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p34.3	MACF1	rs599892-C	0.7	1E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
889	chr1	39923774	39923775	rs658191	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	1p34.3	NR	rs658191-G	0.03	4E-7		1.86	[1.46-2.36]	Illumina [9875636] (imputed)	N
889	chr1	39924397	39924398	rs2296175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p34.3		rs2296175-A	NR	1E-11		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
889	chr1	39941507	39941508	rs116195355	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p34.3	MACF1	rs116195355-C	0.969118	6E-11		0.0259588	[0.018-0.034] unit increase	Affymetrix [12370749]	N
889	chr1	39942242	39942242	rs371894931	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1p34.3	MACF1	rs371894931-CA	0.157	3E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
889	chr1	39944918	39944919	rs116784299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p34.3		rs116784299-?	NR	2E-9				NR [~ 8900000] (imputed)	N
889	chr1	39944918	39944919	rs116784299	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p34.3		rs116784299-?	NR	6E-10		0.0317847	[0.021-0.042] unit decrease	Affymetrix [20259828] (imputed)	N
889	chr1	39945296	39945297	rs2275767	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	1p34.3		rs2275767-T	NR	3E-6		0.34	[0.22-0.54]	Illumina [10838245] (imputed)	N
889	chr1	39948198	39948202	rs869056032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs869056032-GTTTT	0.784506	3E-8		0.0277653	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
889	chr1	39948198	39948202	rs869056032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1p34.3		rs869056032-GTTTT	0.784506	5E-8		0.0267884	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
889	chr1	39948198	39948202	rs869056032	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p34.3	MACF1	rs869056032-?	NR	4E-13		0.0235	[0.018-0.029] unit increase	Affymetrix [5701386] (imputed)	N
889	chr1	39953466	39953467	rs61779328	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p34.3	NR	rs61779328-A	NR	2E-7		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
889	chr1	39964911	39964912	rs60069508	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p34.3		rs60069508-G	0.767321	1E-12		0.0332822	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
889	chr1	39964911	39964912	rs60069508	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p34.3		rs60069508-G	0.7673	3E-12		0.0332006	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
889	chr1	39969058	39969059	rs72663503	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p34.3		rs72663503-C	0.772362	3E-19		0.0430773	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
889	chr1	39969058	39969059	rs72663503	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p34.3	NR	rs72663503-T	0.228	2E-12		0.020886958	[0.015-0.027] unit increase	Affymetrix [10549349] (imputed)	N
889	chr1	39970927	39970928	rs61779331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p34.3		rs61779331-A	NR	1E-11		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
889	chr1	39975407	39975408	rs879037	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p34.3	BMP8A	rs879037-T	0.45	1E-15		7.99	z-score increase	Affymetrix [4311822] (imputed)	N
889	chr1	39976059	39976059	rs201468966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p34.3		rs201468966-CA	0.177508364	1E-8		0.068944395	[0.045-0.093] unit increase	Illumina [13429769] (imputed)	N
889	chr1	39976059	39976059	rs201468966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1p34.3		rs201468966-CA	0.179903	7E-9		0.0274598	[0.018-0.037] unit decrease	Illumina [13476266] (imputed)	N
889	chr1	39976059	39976059	rs201468966	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	1p34.3		rs201468966-CA	0.184250638	3E-8		1.0625932	[1.040092982-1.085580261]	Illumina [8919992] (imputed)	N
889	chr1	39976059	39976059	rs201468966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p34.3	NR	rs201468966-C	0.766905	9E-36		0.012422	[0.01-0.014] unit increase	Affymetrix [16582909] (imputed)	N
889	chr1	39976059	39976059	rs201468966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p34.3	NR	rs201468966-C	0.767112	2E-21		0.0133568	[0.01-0.016] unit increase	Affymetrix [16585854] (imputed)	N
889	chr1	39976059	39976059	rs201468966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p34.3	NR	rs201468966-C	0.766905	2E-43		0.0149563	[0.013-0.017] unit increase	Affymetrix [16582965] (imputed)	N
889	chr1	39976059	39976059	rs201468966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p34.3	NR	rs201468966-C	0.767112	1E-23		0.0163153	[0.013-0.02] unit increase	Affymetrix [16585866] (imputed)	N
890	chr1	39983021	39983022	rs61779334	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p34.3	BMP8A	rs61779334-G	NR	5E-6		3.1595874	[1.75-4.57] unit increase	Illumina [> 6200000] (imputed)	N
890	chr1	39983273	39983274	rs1180322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p34.3		rs1180322-T	NR	4E-22		0.0196	[0.016-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
890	chr1	39988318	39988318	rs139401553	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p34.3	NR	rs139401553-TTTG	0.5495300000000001	5E-8		0.00737161	[0.0047-0.01] unit increase	Affymetrix [16578495] (imputed)	N
890	chr1	39989925	39989926	rs710913	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p34.3	PPIEL	rs710913-T	0.358603	2E-26		0.00245947	[0.002-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
890	chr1	39989925	39989926	rs710913	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	BMP8A	rs710913-G	0.36	7E-6				Illumina [905956]	N
890	chr1	39991587	39991588	rs3738676	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	1p34.3	KIAA0754, BMP8A, MACF1, PABPC4, PPIEL, SNORA55	rs3738676-?	NR	3E-11				Affymetrix [up to 7325140] (imputed)	N
890	chr1	39995073	39995074	rs755249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p34.3		rs755249-T	NR	1E-15		0.0617	[0.047-0.077] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
890	chr1	39995073	39995074	rs755249	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p34.3	LOC101929516	rs755249-T	0.2328	5E-13		0.0215	[0.016-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
890	chr1	39995073	39995074	rs755249	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p34.3	LOC101929516	rs755249-T	0.2328	1E-17		0.0239	[0.018-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
890	chr1	39995073	39995074	rs755249	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p34.3	LOC101929516	rs755249-T	0.2328	2E-13		0.0202	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
890	chr1	39995073	39995074	rs755249	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p34.3	BMP8A	rs755249-T	NR	4E-14		0.0354519	[0.026-0.045] unit increase	Affymetrix [16832071] (imputed)	N
890	chr1	39995073	39995074	rs755249	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.3	BMP8A	rs755249-G	0.24	2E-8	(EA)	3.45	[3-3.9]	Illumina [905956]	N
890	chr1	40003409	40003410	rs72663520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p34.3		rs72663520-T	NR	2E-21		0.0233	[0.019-0.028] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
890	chr1	40003409	40003410	rs72663520	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p34.3	NR	rs72663520-T	0.229094	9E-34		0.026068	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
890	chr1	40003409	40003410	rs72663520	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p34.3	PPIEL	rs72663520-T	0.2135	3E-10		0.0225	[0.015-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
890	chr1	40005902	40005903	rs72663521	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1p34.3	NR	rs72663521-?	NR	2E-12				NR [up to 7000000]	N
890	chr1	40010234	40010235	rs61779359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.3		rs61779359-C	NR	3E-26		0.0259	[0.021-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
890	chr1	40010234	40010235	rs61779359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p34.3		rs61779359-C	NR	1E-37		0.0314	[0.027-0.036] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
890	chr1	40018508	40018509	rs4660808	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p34.3	NA	rs4660808-T	0.223	8E-12		0.0145	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
890	chr1	40018508	40018509	rs4660808	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	1p34.3	PABPC4	rs4660808-T	NR	2E-13				NR [25015711] (imputed)	N
890	chr1	40019590	40019591	rs61781364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1p34.3		rs61781364-G	0.160646	1E-9		0.0300387	[0.02-0.04] unit decrease	Illumina [13476299] (imputed)	N
890	chr1	40022776	40022777	rs17264866	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p34.3	NR	rs17264866-C	0.7772	8E-12		0.0145	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
890	chr1	40022776	40022777	rs17264866	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs17264866-C	NR	9E-19		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40022776	40022777	rs17264866	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs17264866-C	0.762	1E-15	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40028179	40028180	rs4660293	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1p34.3		rs4660293-A	0.787	2E-6		0.0068	[0.0041-0.0095] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
890	chr1	40028179	40028180	rs4660293	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	1p34.3	PABPC4	rs4660293-C	0.235	1E-6		1.194	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr1	40028179	40028180	rs4660293	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs4660293-A	NR	9E-19		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40028179	40028180	rs4660293	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs4660293-A	0.762	1E-15	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40028179	40028180	rs4660293	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1p34.3	PABPC4	rs4660293-G	0.207963840034353	9E-8		0.3012223	[0.19-0.41] unit increase	Illumina [247039]	N
890	chr1	40028179	40028180	rs4660293	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	1p34.3	PABPC4	rs4660293-G	0.208	9E-7		0.18	[0.12-0.24] unit increase	Illumina [247039]	N
890	chr1	40028179	40028180	rs4660293	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	1p34.3	PABPC4	rs4660293-A	NR	3E-15				NR [2501543] (imputed)	N
890	chr1	40028179	40028180	rs4660293	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p34.3	PABPC4	rs4660293-G	0.24	3E-18		0.035	[NR] unit decrease	NR [NR] (imputed)	N
890	chr1	40028179	40028180	rs4660293	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1p34.3	MACF1, PABPC4	rs4660293-G	0.23	4E-10		0.48	[0.3-0.66] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
890	chr1	40035685	40035686	rs17513135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p34.3		rs17513135-T	NR	3E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
890	chr1	40035685	40035686	rs17513135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p34.3		rs17513135-T	NR	1E-63		0.0422	[0.037-0.047] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
890	chr1	40035685	40035686	rs17513135	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs17513135-T	0.206218	3E-24				Affymetrix, Illumina [21126107] (imputed)	N
890	chr1	40035685	40035686	rs17513135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	1p34.3		rs17513135-?	NR	4E-11				NR [~ 8900000] (imputed)	N
890	chr1	40035685	40035686	rs17513135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs17513135-C	NR	2E-20		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40035685	40035686	rs17513135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p34.3	NR	rs17513135-C	0.769	1E-16	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
890	chr1	40035685	40035686	rs17513135	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1p34.3	LOC101929516	rs17513135-T	0.23	2E-16		0.038	[0.028-0.048] unit decrease	Affymetrix [27624732] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	3E-14		0.0365795	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	9E-16		0.037525	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	1E-16		0.040521	[0.031-0.05] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p34.3		rs3768321-G	0.80349	5E-8		0.0267299	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1p34.3		rs3768321-G	0.80349	4E-9		0.0286692	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	1E-20		0.0460818	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-11		0.032688	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-13		0.0346999	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-19		0.0420588	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	4E-14		0.0348095	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	1E-15		0.0377852	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	5E-14		0.0346647	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	3E-8		0.0287975	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	3E-16		0.0392211	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	5E-18		0.042286	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-10		0.0330467	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	5E-19		0.0428341	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	9E-21		0.043708	[0.035-0.053] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-10		0.0334026	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-11		0.0340656	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	5E-10		0.0324281	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	2E-18		0.0420193	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	8E-17		0.0396307	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1p34.3		rs3768321-G	0.803476	7E-10		0.0319591	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
890	chr1	40035927	40035928	rs3768321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p34.3		rs3768321-T	NR	2E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
890	chr1	40035927	40035928	rs3768321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p34.3		rs3768321-T	NR	1E-24		0.0282	[0.023-0.034] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
890	chr1	40035927	40035928	rs3768321	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p34.3	LOC101929516	rs3768321-?		7E-12		0.0388	[0.028-0.05] unit increase	Illumina [31500000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.3	RP11-69E11.8, PABPC4	rs3768321-T	0.196494	1E-27		0.030358233	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.3	RP11-69E11.8, PABPC4	rs3768321-T	0.196552	1E-22		0.0265709	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p34.3	RP11-69E11.8, PABPC4	rs3768321-T	0.196571	3E-20		0.0254847	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p34.3	RP11-69E11.8, PABPC4	rs3768321-T	0.196544	5E-37		0.035259627	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs3768321-G	0.810319	9E-44				Affymetrix, Illumina [22063850] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p34.3	NR	rs3768321-G	0.803323	2E-44		0.033086	[0.028-0.038] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs3768321-T	0.182605	3E-37				Affymetrix, Illumina [24246363] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p34.3	NR	rs3768321-T	0.196544	4E-23		0.024921	[0.02-0.03] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.3	NR	rs3768321-T	0.182094	4E-53				Affymetrix, Illumina [20825802] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p34.3	NR	rs3768321-T	0.196414	5E-47		0.034827	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p34.3	PABPC4	rs3768321-G	0.803309	1E-79		0.0452523	[0.041-0.05] unit increase	Affymetrix [NR] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p34.3	PABPC4	rs3768321-G	0.803227	6E-66		0.0423077	[0.037-0.047] unit increase	Affymetrix [NR] (imputed)	N
890	chr1	40035927	40035928	rs3768321	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p34.3	NR	rs3768321-G	0.803158	5E-15		0.0308558	[0.023-0.038] unit increase	Affymetrix [16577313] (imputed)	N
890	chr1	40035927	40035928	rs3768321	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p34.3	NR	rs3768321-G	0.803267	5E-37		0.0322461	[0.027-0.037] unit decrease	NR [NR]	N
890	chr1	40035927	40035928	rs3768321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or type 2 diabetes	28,862 European ancestry asthma cases, 422,048 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	1p34.3	NR	rs3768321-?	NR	5E-8				Affymetrix [up to 8270000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	1p34.3	NR	rs3768321-T	0.173	2E-15				Affymetrix, Illumina [at least 2500000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.3		rs3768321-?	NR	2E-42				NR [~ 8900000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.3		rs3768321-?	NR	3E-46				NR [~ 8900000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p34.3	MACF1	rs3768321-T	0.2004	3E-26		1.09	[1.07-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p34.3	PABPC4	rs3768321-T	0.1737	1E-36		0.0505	[0.043-0.058] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	1p34.3	MACF1	rs3768321-T	NR	9E-9		1.118625		Affymetrix, Illumina [~ 13000000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p34.3	PABPC4, RP11-69E11.8	rs3768321-T	0.1975	2E-16		0.03667472	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
890	chr1	40035927	40035928	rs3768321	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	1p34.3	MACF1	rs3768321-T	0.185	2E-9		1.13	[1.08-1.17]	NR [at least 8497425] (imputed)	N
890	chr1	40036846	40036847	rs2293476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1p34.3		rs2293476-C	NR	8E-11		0.0632	[0.044-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
890	chr1	40036846	40036847	rs2293476	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	1p34.3	PABPC4	rs2293476-C	0.228804	2E-8		0.077206	[0.05-0.104] unit increase	Affymetrix [7288503] (imputed)	N
890	chr1	40036846	40036847	rs2293476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.3		rs2293476-?	NR	4E-20				NR [~ 8900000] (imputed)	N
890	chr1	40036846	40036847	rs2293476	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1p34.3	PABPC4	rs2293476-C	0.23	8E-13		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
890	chr1	40036846	40036847	rs2293476	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p34.3	PABPC4	rs2293476-C	0.23	3E-14	(BMI-adjusted)	0.035	[0.025-0.045] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
890	chr1	40036943	40036944	rs61743745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.3	NR	rs61743745-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
890	chr1	40036943	40036944	rs61743745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p34.3		rs61743745-?	NR	3E-11				NR [~ 8900000] (imputed)	N
890	chr1	40037353	40037354	rs41264487	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1p34.3	LOC101929516	rs41264487-?	NR	5E-8		0.0315	[0.02-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
890	chr1	40037901	40037902	rs2242500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.3	NR	rs2242500-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
890	chr1	40041371	40041371	rs79094524	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1p34.3		rs79094524-G	0.765448	2E-8		0.0242485	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
890	chr1	40045299	40045300	rs61781370	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	1p34.3	BMP8A, KIAA0754, MACF1, PABPC4, PPIEL, SNORA55	rs61781370-?	NR	7E-9				Affymetrix [up to 7325140] (imputed)	N
890	chr1	40048008	40048009	rs11206374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p34.3	PABPC4	rs11206374-G	0.775183	9E-26		0.0249878	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
890	chr1	40048008	40048009	rs11206374	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1p34.3	PABPC4	rs11206374-A	0.2254766	4E-17		0.065077	[0.05-0.08] unit increase	Affymetrix [9463307] (imputed)	N
890	chr1	40049183	40049184	rs11206378	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1p34.3	PABPC4	rs11206378-A	0.6433	4E-7		0.0078	[0.0049-0.0107] unit increase	Affymetrix [~ 7740000] (imputed)	N
890	chr1	40052107	40052108	rs61781371	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p34.3		rs61781371-C	0.775834	1E-15		0.0375439	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
890	chr1	40052107	40052108	rs61781371	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1p34.3		rs61781371-C	0.775847	3E-13		0.0335193	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
890	chr1	40052107	40052108	rs61781371	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	1p34.3		rs61781371-C	0.775847	2E-11		0.0318307	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
890	chr1	40057542	40057543	rs113825410	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1p34.3	PABPC4	rs113825410-A	NR	6E-11		0.00979182	[0.0069-0.0127] unit increase	Affymetrix [10061374] (imputed)	N
890	chr1	40060024	40060025	rs76841360	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p34.3	PABPC4	rs76841360-A	0.23	5E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
890	chr1	40060472	40060473	rs4660303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs4660303-G	0.775632	4E-12		0.0329006	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
890	chr1	40060472	40060473	rs4660303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs4660303-G	0.775632	1E-13		0.0353646	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
890	chr1	40060472	40060473	rs4660303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p34.3		rs4660303-G	0.775632	2E-16		0.0386507	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	9E-6				Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	5E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	4E-24				Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	4E-27				Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	2E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p34.3	PABPC4, HEYL	rs4660303-A	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	5E-17		0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	4E-11	(EA)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	2E-6	(Asian)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	6E-15		0.01024	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	5E-7	(Asian)	0.01012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40060472	40060473	rs4660303	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p34.3	PABPC4, HEYL	rs4660303-A	NR	3E-6	(EA)	0.008588	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr1	40064960	40064961	rs12037222	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	1p34.3	PABPC4	rs12037222-A	NR	6E-11		0.045	[0.03-0.06] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr1	40069938	40069939	rs3916164	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1p34.2	HEYL	rs3916164-G	0.71	3E-10	(MCH)	0.008	[0.0072-0.0088] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
890	chr1	40073478	40073479	rs12061406	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p34.2	NA	rs12061406-T	0.0789	4E-6		0.0141	[0.008-0.0202] unit decrease	NR [~ 27400000] (imputed)	N
890	chr1	40077536	40077537	rs61781391	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.2	intergenic	rs61781391-A	0.2172	1E-11		0.0154	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	6E-12		0.0303059	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	2E-11		0.029514	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	5E-10		0.0273301	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	1E-12		0.031176	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	1E-13		0.0329018	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61781392-C	0.783281	7E-13		0.031718	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
890	chr1	40083640	40083641	rs61781392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p34.2		rs61781392-A	NR	3E-22		0.0253	[0.02-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
890	chr1	40086356	40086357	rs61232586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p34.2		rs61232586-G	0.783979	3E-8		0.0261193	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
890	chr1	40087763	40087764	rs61781393	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p34.2		rs61781393-G	0.784223	8E-9		0.025624	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
890	chr1	40088042	40088043	rs17343290	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p34.2	NR	rs17343290-A	0.17768	2E-11		0.0585362	[0.041-0.076] unit increase	Affymetrix [17914406] (imputed)	N
890	chr1	40088042	40088043	rs17343290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.2	NR	rs17343290-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
890	chr1	40089424	40089425	rs116401702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p34.2	NR	rs116401702-T	NR	5E-11		0.0389	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
890	chr1	40089424	40089425	rs116401702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p34.2	NR	rs116401702-T	NR	5E-9		0.0348	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
891	chr1	40132794	40132795	rs873917	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1p34.2	NT5C1A	rs873917-T	0.29	8E-6	(susceptibilty)	1.16	[NR]	Illumina [288357]	N
891	chr1	40151667	40151668	rs6688223	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p34.2		rs6688223-A	0.214	2E-8		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
891	chr1	40160584	40160585	rs11577371	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		1p34.2	HPCAL4	rs11577371-G	NR	4E-6		0.15	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
891	chr1	40184987	40184988	rs506424	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	1p34.2	NR	rs506424-?	NR	7E-6		0.074	[0.041-0.107] unit decrease	Illumina [at least 560000] (imputed)	N
891	chr1	40204822	40204823	rs3738673	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPIE	5,365 Icelandic ancestry individuals	NA	1p34.2		rs3738673-T	0.4211	8E-44		0.260465	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
891	chr1	40205022	40205023	rs76571594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p34.2		rs76571594-?	NR	9E-10				NR [~ 8900000] (imputed)	N
891	chr1	40210467	40210468	rs12086750	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.2	PPIE	rs12086750-C	0.371	5E-53	(Peptidyl-prolyl cis-trans isomerase E, PPIE.5238.26.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
891	chr1	40212877	40212878	rs9787249	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p34.2	PPIE, BMP8B	rs9787249-A	0.3766365	9E-24	(EA, Peptidyl-prolyl cis-trans isomerase E)	0.4596	[0.37-0.55] unit decrease	Affymetrix [509946]	N
891	chr1	40219064	40219065	rs1046988	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.2	PPIE	rs1046988-C	0.575	4E-25	(PPIE, 5238_26_3)	0.25976765	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
892	chr1	40275088	40275089	rs11585073	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	1p34.2	BMP8B	rs11585073-A	0.24509999999999998	4E-33		1.06	[1.05-1.07]	Affymetrix, Illumina [8494288] (imputed)	N
892	chr1	40290896	40290897	rs72666941	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p34.2	NR	rs72666941-A	0.215998	5E-13		0.016247	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
892	chr1	40294899	40294900	rs2172362	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p34.2	NR	rs2172362-C	0.467877	5E-10		0.0189255	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
892	chr1	40319131	40319132	rs3768307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p34.2		rs3768307-?	NR	1E-8				NR [~ 8900000] (imputed)	N
892	chr1	40335624	40335625	rs6700363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.2	NR	rs6700363-C	0.401541	1E-10		0.012642	[0.0088-0.0165] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
892	chr1	40351650	40351651	rs761164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.2		rs761164-?	NR	3E-10				NR [~ 8900000] (imputed)	N
893	chr1	40374385	40374386	rs6664244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p34.2	NR	rs6664244-C	0.390156	6E-9		0.0131848715	[0.0087-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr1	40384967	40384968	rs12127002	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	1p34.2		rs12127002-A	NR	2E-9		0.0334	[0.023-0.044] unit decrease	Affymetrix [6193476] (imputed)	N
893	chr1	40384967	40384968	rs12127002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.2		rs12127002-?	NR	6E-9				NR [~ 8900000] (imputed)	N
893	chr1	40391751	40391752	rs7542907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.2		rs7542907-T	0.262333	3E-15		0.019867089	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
893	chr1	40391751	40391752	rs7542907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs7542907-T	0.259492	8E-11				Affymetrix, Illumina [24649327] (imputed)	N
893	chr1	40393159	40393160	rs61781290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	1p34.2		rs61781290-G	NR	3E-12		0.0855466	[0.062-0.11] unit increase	Affymetrix [87696910] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.2		rs61781290-G	0.265705	3E-13		0.018489111	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2		rs61781290-G	0.26569	3E-24		0.02595396	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61781290-G	0.301428	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61781290-G	0.30107	1E-32				Affymetrix, Illumina [24588908] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p34.2	NR	rs61781290-G	0.264073	1E-34		0.025428	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61781290-G	0.30044	7E-17				Affymetrix, Illumina [24653286] (imputed)	N
893	chr1	40393159	40393160	rs61781290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61781290-G	0.299919	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
893	chr1	40395194	40395195	rs77320796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p34.2	intergenic	rs77320796-G	0.2595	1E-10		0.0267969	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
893	chr1	40398940	40398941	rs4068540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p34.2		rs4068540-G	0.266863	3E-12		0.017442208	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
893	chr1	40398940	40398941	rs4068540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p34.2	NR	rs4068540-G	0.265677	2E-14		0.016976	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
893	chr1	40400396	40400397	rs4381172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs4381172-C	0.745302	2E-21				Affymetrix, Illumina [17210439] (imputed)	N
893	chr1	40400396	40400397	rs4381172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p34.2	NR	rs4381172-C	0.738397	1E-22		0.02129	[0.017-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
893	chr1	40406714	40406715	rs77692382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs77692382-?	NR	2E-10				NR [~ 8900000] (imputed)	N
893	chr1	40406714	40406715	rs77692382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.2		rs77692382-?	NR	9E-22				NR [~ 8900000] (imputed)	N
893	chr1	40413097	40413098	rs3131706	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p34.2	NR	rs3131706-?	NR	4E-6		0.125345	[0.072-0.179] unit increase	NR [13958389] (imputed)	N
893	chr1	40418629	40418630	rs7515857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p34.2	MFSD2A	rs7515857-T	0.261357	2E-20		0.023450188	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr1	40418629	40418630	rs7515857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p34.2	NR	rs7515857-T	0.257328	2E-19		0.01903	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
893	chr1	40418629	40418630	rs7515857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p34.2	NR	rs7515857-T	0.257279	3E-16		0.017291	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
893	chr1	40419680	40419681	rs3131703	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p34.2	TRIT1, MYCL1, MFSD2A, CAP1, NFYC	rs3131703-?		4E-10				Affymetrix, Illumina [NR] (imputed)	N
893	chr1	40419731	40419732	rs61781296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p34.2		rs61781296-T	NR	2E-9		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
893	chr1	40419731	40419732	rs61781296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p34.2		rs61781296-T	NR	3E-25		0.0273	[0.022-0.032] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
893	chr1	40419731	40419732	rs61781296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p34.2		rs61781296-T	NR	4E-15		0.0213	[0.016-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
893	chr1	40419731	40419732	rs61781296	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p34.2		rs61781296-C	0.74	3E-14				Affymetrix [10369434] (imputed)	N
893	chr1	40419731	40419732	rs61781296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61781296-T	0.250444	9E-14				Affymetrix, Illumina [23472807] (imputed)	N
893	chr1	40421617	40421618	rs140696582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p34.2	MFSD2A	rs140696582-T	0.260546	5E-15		0.019726614	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr1	40421617	40421618	rs140696582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p34.2	MFSD2A	rs140696582-T	0.260571	9E-12		0.0172005	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr1	40427974	40427975	rs2047007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p34.2		rs2047007-T	NR	1E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
893	chr1	40427974	40427975	rs2047007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p34.2		rs2047007-T	NR	5E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
893	chr1	40427974	40427975	rs2047007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.2	MFSD2A	rs2047007-T	0.263895	6E-10		0.0155351255	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr1	40427974	40427975	rs2047007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.2	MFSD2A	rs2047007-T	0.263891	1E-13		0.018620804	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
893	chr1	40427974	40427975	rs2047007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.2		rs2047007-?	NR	2E-10				NR [~ 8900000] (imputed)	N
893	chr1	40427974	40427975	rs2047007	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p34.2	MFSD2A	rs2047007-T	NR	2E-9		0.0256297	[0.017-0.035] unit increase	Affymetrix [16832071] (imputed)	N
893	chr1	40433770	40433771	rs3103778	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	1p34.2	MFSD2	rs3103778-G		9E-6		6.3	[NR] ms increase	Illumina [> 930000]	N
893	chr1	40435998	40435999	rs2131311	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p34.2	MFSD2A	rs2131311-A	0.285366	3E-8		0.0123261	[0.008-0.0167] unit increase	Affymetrix [NR] (imputed)	N
893	chr1	40442025	40442026	rs183414028	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	1p34.2	NR	rs183414028-C	0.010000000000000009	2E-7		2.564103	[1.79-3.7]	NR [8482392] (imputed)	N
893	chr1	40464893	40464894	rs34022242	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Time to smoke first cigarette in the morning	18,567 European ancestry individuals	10,061 European ancestry individuals	1p34.2	MFSD2A	rs34022242-C		4E-7		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
894	chr1	40529028	40529029	rs3131667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs3131667-?	NR	8E-8				NR [~ 8900000] (imputed)	N
894	chr1	40541143	40541144	rs3122424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2	PPT1	rs3122424-G	0.665757	2E-9		0.014330871	[0.0096-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr1	40559685	40559686	rs7533094	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.2	PPT1	rs7533094-A	0.042	2E-46	(Palmitoyl-protein thioesterase 1, PPT1.9244.27.3)	0.86	[0.74-0.98] unit decrease	Affymetrix [10572788] (imputed)	N
894	chr1	40560235	40560236	rs4660387	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.2	PPT1	rs4660387-G	0.6925	1E-79	(PPT1, 9244_27_3)	0.48750326	[0.44-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
894	chr1	40564084	40564085	rs34805060	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.2	NR	rs34805060-A	0.206	3E-42	(Palmitoyl-protein thioesterase 1, PPT1.9244.27.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
894	chr1	40564552	40564553	rs6600314	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPT1	5,360 Icelandic ancestry individuals	NA	1p34.2		rs6600314-T	0.306	5E-150		0.494164	[0.46-0.53] unit increase	Illumina [7506463] (imputed)	N
894	chr1	40567073	40567074	rs57239760	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPT1	5,360 Icelandic ancestry individuals	NA	1p34.2		rs57239760-T	0.05242	2E-81		0.774111	[0.69-0.85] unit decrease	Illumina [7506463] (imputed)	N
895	chr1	40633973	40633974	rs12122168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs12122168-?	NR	5E-12				NR [~ 8900000] (imputed)	N
895	chr1	40634841	40634842	rs183468661	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p34.2	RLF	rs183468661-T	0.999	2E-6	(AA)	0.388	unit increase	Illumina [NR] (imputed)	N
895	chr1	40634841	40634842	rs183468661	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p34.2	RLF	rs183468661-T	0.999	2E-6	(AA)	1.915	NR unit increase	Illumina [NR] (imputed)	N
895	chr1	40686993	40686994	rs201510740	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1p34.2	RLF	rs201510740-?		8E-6				Illumina [7405822] (imputed)	N
895	chr1	40703243	40703244	rs35042446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.2	NR	rs35042446-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
895	chr1	40703243	40703244	rs35042446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p34.2		rs35042446-?	NR	6E-9				NR [~ 8900000] (imputed)	N
896	chr1	40776751	40776752	rs3737815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p34.2	COL9A2	rs3737815-A	NR	4E-10		0.0234738	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
896	chr1	40776751	40776752	rs3737815	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.2	COL9A2	rs3737815-A	0.1684	2E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
896	chr1	40776751	40776752	rs3737815	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.2	NR	rs3737815-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
896	chr1	40781037	40781038	rs1846158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs1846158-?	NR	3E-42				NR [~ 8900000] (imputed)	N
896	chr1	40799726	40799727	rs114143774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p34.2	RP1-228H13.1	rs114143774-C	NR	3E-8		0.0360477	[0.023-0.049] unit decrease	Affymetrix [321114] (imputed)	N
896	chr1	40831380	40831381	rs11207959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p34.2	SMAP2	rs11207959-T	0.06628	8E-19		0.039814755	[0.031-0.049] unit increase	Affymetrix [93095623] (imputed)	N
896	chr1	40842932	40842933	rs76904272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.2	SMAP2	rs76904272-A	0.064576	9E-11		0.02942646	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
896	chr1	40847821	40847822	rs79904641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2	SMAP2	rs79904641-C	0.064553	2E-10		0.02905305	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
896	chr1	40852381	40852382	rs1391315	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	1p34.2	SMAP1L	rs1391315-G	NR	4E-6		1.82	[1.41-2.35]	NR [7738399] (imputed)	N
896	chr1	40883094	40883095	rs2235701	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p34.2	NR	rs2235701-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
897	chr1	40921237	40921238	rs12568089	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	1p34.2	ZFP69B	rs12568089-?	0.23	3E-6	(female)	1.352	[1.19-1.53]	Illumina [5595657] (imputed)	N
898	chr1	41050951	41050952	rs4660438	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (metrorrhagia)	406 Japanese ancestry female cases, 5,328 Japanese ancestry female controls	302 Japanese ancestry female cases, 5,312 Japanese ancestry female controls	1p34.2	NR	rs4660438-A	0.616723288	4E-7		0.2990385	[0.18-0.42] unit increase	Affymetrix [536506]	N
898	chr1	41155485	41155486	rs2744801	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p34.2	NFYC	rs2744801-C	0.663446	4E-8		0.0079536	[0.0051-0.0108] unit increase	Affymetrix [12370749]	N
899	chr1	41160203	41160204	rs7519348	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<lower limit of normal) in never smokers	401 European ancestry cases, 4,669 European ancestry controls	92 European ancestry cases, 1,874 European ancestry controls	1p34.2	NFYC	rs7519348-A	0.33	2E-6		1.38	[1.22-1.54]	Illumina [227981]	N
899	chr1	41160203	41160204	rs7519348	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<70%) in never smokers	548 European ancestry cases, 4,522 European ancestry controls	230 European ancestry cases, 1,736 European ancestry controls	1p34.2	NFYC	rs7519348-A	0.33	1E-6		1.32	[1.10-1.54]	Illumina [227981]	N
899	chr1	41176465	41176466	rs10489167	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	1p34.2	NFYC	rs10489167-?	NR	6E-7		0.16	[NR] unit increase	Affymetrix [329806]	N
899	chr1	41239510	41239511	rs4660456	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	1p34.2	NFYC	rs4660456-?	NR	4E-6				Illumina [874956]	N
899	chr1	41250960	41250961	rs116015634	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	1p34.2		rs116015634-C	0.98	4E-13		0.139	[0.1-0.18] unit increase	Affymetrix [NR]	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	9E-23	(194 ms)	0.181745	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	9E-20	(238 ms)	0.167369	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	9E-11	(254 ms)	0.122051	[0.084-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-26	(222 ms)	0.193029	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-24	(230 ms)	0.184087	[0.15-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-24	(200 ms)	0.186696	[0.15-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-23	(190 ms)	0.17991	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-21	(236 ms)	0.172042	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	8E-21	(178 ms)	0.172936	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	7E-14	(156 ms)	0.136265	[0.099-0.173] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	7E-11	(132 ms)	0.115664	[0.079-0.153] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	6E-25	(198 ms)	0.191035	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	6E-19	(174 ms)	0.163433	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	6E-12	(252 ms)	0.128978	[0.091-0.167] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	6E-12	(140 ms)	0.124089	[0.087-0.161] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	6E-10	(124 ms)	0.110748	[0.074-0.148] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-26	(226 ms)	0.193369	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-26	(208 ms)	0.194438	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-25	(228 ms)	0.189457	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-25	(220 ms)	0.189195	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-23	(192 ms)	0.181241	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-15	(246 ms)	0.14656	[0.11-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-15	(162 ms)	0.143009	[0.11-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-14	(154 ms)	0.136665	[0.1-0.174] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-14	(152 ms)	0.136021	[0.099-0.173] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-13	(136 ms)	0.131831	[0.095-0.169] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	5E-10	(114 ms)	0.112772	[0.076-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-8	(258 ms)	0.104772	[0.067-0.142] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-22	(232 ms)	0.177545	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-21	(234 ms)	0.174318	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-19	(240 ms)	0.164404	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-14	(248 ms)	0.1418	[0.1-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-12	(144 ms)	0.125856	[0.089-0.163] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	4E-11	(134 ms)	0.119714	[0.083-0.157] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-26	(216 ms)	0.194668	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-26	(210 ms)	0.195042	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-20	(170 ms)	0.169038	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-15	(160 ms)	0.144244	[0.11-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-13	(250 ms)	0.136272	[0.099-0.174] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-13	(138 ms)	0.134363	[0.098-0.171] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-11	(116 ms)	0.120659	[0.084-0.158] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	3E-10	(126 ms)	0.113017	[0.076-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-9	(256 ms)	0.114401	[0.077-0.152] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-8	(122 ms)	0.102589	[0.066-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-26	(214 ms)	0.195364	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-26	(206 ms)	0.19488	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-25	(204 ms)	0.191341	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-24	(196 ms)	0.188157	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-22	(182 ms)	0.178613	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-21	(188 ms)	0.175878	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-19	(168 ms)	0.165903	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-18	(242 ms)	0.161889	[0.12-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-16	(166 ms)	0.152028	[0.12-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-14	(158 ms)	0.139941	[0.1-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-13	(150 ms)	0.133005	[0.096-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-13	(148 ms)	0.13182	[0.095-0.169] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-12	(146 ms)	0.128902	[0.092-0.166] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-11	(142 ms)	0.120193	[0.083-0.157] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-10	(130 ms)	0.116329	[0.079-0.153] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	2E-10	(128 ms)	0.116609	[0.08-0.154] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-8	(118 ms)	0.103788	[0.067-0.141] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-26	(224 ms)	0.195748	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-26	(212 ms)	0.196014	[0.16-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-25	(218 ms)	0.19194	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-23	(202 ms)	0.185486	[0.15-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-21	(184 ms)	0.176336	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-21	(180 ms)	0.176075	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-20	(186 ms)	0.173511	[0.14-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-19	(176 ms)	0.166541	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-19	(172 ms)	0.165969	[0.13-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-16	(244 ms)	0.154534	[0.12-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.2	KCNQ4	rs116015634-C	0.978503	1E-14	(164 ms)	0.143068	[0.11-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
899	chr1	41250960	41250961	rs116015634	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1p34.2		rs116015634-C	0.977	2E-8		0.097	[0.064-0.130] bpm increase	Affymetrix [9800000] (imputed)	N
899	chr1	41254276	41254277	rs138553394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs138553394-?	NR	4E-8				NR [~ 8900000] (imputed)	N
900	chr1	41311640	41311641	rs74652630	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1p34.2	NR	rs74652630-T		3E-6		0.2528	[0.15-0.36] SD units increase	NR [10700000] (imputed)	N
900	chr1	41323031	41323032	rs113073438	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	1p34.2	NR	rs113073438-C	NR	5E-8		0.538	unit increase	Illumina [NR]	N
900	chr1	41328643	41328644	rs41268099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs41268099-A	0.109679	8E-21				Affymetrix, Illumina [23467995] (imputed)	N
900	chr1	41328643	41328644	rs41268099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p34.2	NR	rs41268099-A	0.110855	2E-22		0.029048	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
900	chr1	41329674	41329675	rs28583644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p34.2	RP5-1066H13.4	rs28583644-T	0.113128	1E-13		0.025844079	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
900	chr1	41330165	41330166	rs113403779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p34.2		rs113403779-T	NR	1E-12		0.0264	[0.019-0.034] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
900	chr1	41330725	41330726	rs77046911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.2	RP5-1066H13.4	rs77046911-T	0.112136	2E-17		0.029742153	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
900	chr1	41348271	41348272	rs12026695	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial total emptying fraction	35,658 British ancestry individuals	NA	1p34.2		rs12026695-?	NR	1E-8		0.366	[0.24-0.49] unit increase	Affymetrix [10600000] (imputed)	N
900	chr1	41355776	41355777	rs10081968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.2		rs10081968-A	0.102229	4E-11		0.02414573	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr1	41356627	41356628	rs35873233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p34.2	NR	rs35873233-G	0.104893	1E-13		0.023192	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
900	chr1	41356779	41356780	rs12751530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.2		rs12751530-G	NR	2E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
900	chr1	41356779	41356780	rs12751530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs12751530-G	0.144329	5E-14				Affymetrix, Illumina [24649327] (imputed)	N
900	chr1	41356779	41356780	rs12751530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.2	NR	rs12751530-G	0.105911	3E-12		0.020796	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
900	chr1	41356779	41356780	rs12751530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs12751530-?	NR	2E-8				NR [~ 8900000] (imputed)	N
900	chr1	41358653	41358654	rs4660482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs4660482-A	0.12929	2E-16				Affymetrix, Illumina [23114412] (imputed)	N
900	chr1	41367197	41367198	rs1576101	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p34.2	NR	rs1576101-T	NR	2E-8		0.035338	NR unit increase	NR [NR] (imputed)	N
900	chr1	41370065	41370066	rs12133860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p34.2		rs12133860-?	NR	3E-19				NR [~ 8900000] (imputed)	N
900	chr1	41380439	41380440	rs4233486	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p34.2		rs4233486-T	NR	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
900	chr1	41380439	41380440	rs4233486	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.2	intergenic	rs4233486-T	0.64	9E-9	(EA)	1.0309278	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
900	chr1	41390174	41390175	rs10789250	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p34.2	NR	rs10789250-A	0.437321	1E-36		0.0391262	[0.033-0.045] unit decrease	NR [19129689] (imputed)	N
901	chr1	41421732	41421733	rs11580558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p34.2		rs11580558-A	NR	7E-11		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
901	chr1	41421858	41421859	rs11578829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.2		rs11578829-G	0.205944	4E-16		0.022598216	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
901	chr1	41421858	41421859	rs11578829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2		rs11578829-G	0.205926	1E-10		0.017803058	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
901	chr1	41423371	41423372	rs76179192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs76179192-T	0.201446	3E-10				Affymetrix, Illumina [24588908] (imputed)	N
901	chr1	41453452	41453453	rs4453027	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p34.2	NR	rs4453027-G	0.57519	6E-15		0.0101731	[0.0076-0.0128] unit increase	Affymetrix [16578495] (imputed)	N
901	chr1	41453452	41453453	rs4453027	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p34.2	NR	rs4453027-G	0.574558	1E-15		0.0226255	[0.017-0.028] unit increase	Affymetrix [16580851] (imputed)	N
901	chr1	41457692	41457693	rs61780429	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p34.2	CTPS1	rs61780429-T	0.784551	5E-17		0.0186918	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
901	chr1	41457692	41457693	rs61780429	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p34.2		rs61780429-?	NR	4E-19		0.0209349	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
901	chr1	41464133	41464134	rs61780431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p34.2		rs61780431-?	NR	1E-20				NR [~ 8900000] (imputed)	N
901	chr1	41464436	41464437	rs12408576	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	1p34.2	NR	rs12408576-A	0.7	6E-11		0.03	[0.02-0.04] unit increase	NR [9704453]	N
901	chr1	41464436	41464437	rs12408576	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	1p34.2	NR	rs12408576-A	0.7	2E-9		0.02	[0.012-0.028] unit increase	NR [9704453]	N
901	chr1	41475570	41475571	rs61780435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs61780435-?	NR	6E-104				NR [~ 8900000] (imputed)	N
901	chr1	41484150	41484151	rs12736566	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	NR	rs12736566-?	NR	8E-7		4.947	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
901	chr1	41486244	41486245	rs1138293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs1138293-T	0.1946	2E-10		0.17316175	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
901	chr1	41486244	41486245	rs1138293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs1138293-T	0.1946	4E-14		0.12978607	[0.096-0.164] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
901	chr1	41487336	41487337	rs17357954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.2	NR	rs17357954-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
901	chr1	41491570	41491571	rs11354039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p34.2		rs11354039-C	NR	2E-65		0.0301	[0.027-0.034] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
901	chr1	41493110	41493111	rs3157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p34.2	SCMH1	rs3157-G	NR	4E-11		0.0202271	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
901	chr1	41493810	41493811	rs1140227	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	SCMH1	rs1140227-T	NR	4E-8		0.02660323	[0.017-0.036] unit decrease	Affymetrix [NR]	N
901	chr1	41509673	41509674	rs2749418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p34.2		rs2749418-?	NR	9E-9				NR [~ 8900000] (imputed)	N
901	chr1	41509833	41509834	rs12729448	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.2	NR	rs12729448-G	0.112326	4E-9		0.058396526	[0.039-0.078] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
901	chr1	41519757	41519758	rs111908123	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in mean arterial pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	1p34.2	SCMH1, SLFNL1-AS1, SLFNL1, CTPS1	rs111908123-?		6E-8	(EA)	0.49	[0.31-0.67] unit increase	Illumina [42246687] (imputed)	N
901	chr1	41530870	41530871	rs6686842	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1p34.2	SCMH1	rs6686842-C	0.56	2E-8		0.05	[0.02-0.08] s.d. decrease (males)	Affymetrix [402951]	N
901	chr1	41534356	41534357	rs12024115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.2	Intergenic	rs12024115-T	0.1257	5E-17	(MTAG)	0.0226	[0.017-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr1	41534356	41534357	rs12024115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.2	Intergenic	rs12024115-T	0.1253	2E-16	(MTAG)	0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr1	41534356	41534357	rs12024115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p34.2	Intergenic	rs12024115-C	0.8747	4E-9		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
901	chr1	41534356	41534357	rs12024115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.2	Intergenic	rs12024115-T	0.1274	4E-10	(MTAG)	0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr1	41534356	41534357	rs12024115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.2	Intergenic	rs12024115-T	0.127	3E-13	(MTAG)	0.0251	[0.018-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr1	41540901	41540902	rs143365597	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1p34.2		rs143365597-?	NR	6E-38		0.14896	[0.13-0.17] unit increase	NR [9800000] (imputed)	N
901	chr1	41540901	41540902	rs143365597	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.2	SCMH1	rs143365597-A	0.0038	6E-18		0.1406	[0.11-0.17] unit increase	Affymetrix [18391927] (imputed)	N
901	chr1	41540901	41540902	rs143365597	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	1p34.2	SCMH1	rs143365597-A	0.004	1E-13		0.16	[0.12-0.2] unit increase	Affymetrix [18391927] (imputed)	N
901	chr1	41540901	41540902	rs143365597	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	1p34.2	SCMH1	rs143365597-A	0.004	4E-6		0.12	[0.071-0.169] unit increase	Affymetrix [18391927] (imputed)	N
901	chr1	41544278	41544279	rs2885697	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.2	SCMH1	rs2885697-T	0.665	9E-60		0.0323	[0.028-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p34.2	SCMH1	rs2885697-T	0.667	2E-8		0.0071	[0.0046-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p34.2	SCMH1	rs2885697-T	0.6692	2E-9		0.012388377	[0.0083-0.0164] unit decrease	Illumina [9339358] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p34.2	NR	rs2885697-?	NR	6E-19	(male)	0.3279	[0.26-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p34.2	NR	rs2885697-?	NR	2E-7	(female)	0.1327	[0.083-0.183] unit decrease	Affymetrix [7794483] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p34.2	NR	rs2885697-?	NR	2E-25		0.24316	[0.2-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
901	chr1	41544278	41544279	rs2885697	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p34.2	SCMH1	rs2885697-G	0.352	3E-10		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
901	chr1	41544278	41544279	rs2885697	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p34.2	SCMH1	rs2885697-G	0.33	2E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
901	chr1	41547491	41547491	rs34212860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p34.2		rs34212860-TA	NR	6E-17		0.0203	[0.016-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
902	chr1	41556252	41556253	rs6600365	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p34.2	SCMH1	rs6600365-T	0.569	2E-20		0.027	[0.021-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
902	chr1	41570458	41570459	rs475390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p34.2	NR	rs475390-A	0.776427	4E-12		0.015151	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
902	chr1	41618296	41618297	rs114233776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs114233776-?	NR	3E-35				NR [~ 8900000] (imputed)	N
902	chr1	41623727	41623728	rs2284801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.2	Intergenic	rs2284801-G	0.7783	5E-13		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
902	chr1	41640476	41640477	rs35613919	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	NR	rs35613919-?	NR	4E-7		5.085	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
902	chr1	41679565	41679566	rs1032728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p34.2		rs1032728-?	NR	8E-8				NR [~ 8900000] (imputed)	N
903	chr1	41688937	41688938	rs11209718	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p34.2	SCMH1	rs11209718-T	0.44	3E-9		1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
903	chr1	41719455	41719455	rs538419012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	1p34.2	NR	rs538419012-GT	NR	1E-9		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
903	chr1	41727917	41727918	rs79331257	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	1p34.2	Intergenic	rs79331257-T	NR	6E-6	(adjusted for total body fat)	0.295	[0.17-0.42] unit decrease	Illumina [8511049] (imputed)	N
903	chr1	41744820	41744821	rs1892425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p34.2		rs1892425-A	NR	4E-8		0.0142	[0.0091-0.0193] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
903	chr1	41744820	41744821	rs1892425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p34.2	RP11-399E6.1	rs1892425-A	NR	1E-9		0.0219471	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
903	chr1	41745034	41745035	rs16828019	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	ENSG00000235358	rs16828019-T	NR	4E-9		0.027694628	[0.018-0.037] unit decrease	Affymetrix [NR]	N
903	chr1	41745769	41745770	rs2154319	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	1p34.2		rs2154319-T	0.7888	2E-8		0.14025354	[0.089-0.192] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
903	chr1	41745769	41745770	rs2154319	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs2154319-T	0.7825	6E-11		0.11142941	[0.079-0.144] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
903	chr1	41745769	41745770	rs2154319	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p34.2	RP11-399E6.1	rs2154319-T	0.7832	9E-11		0.0503	[0.035-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
903	chr1	41745769	41745770	rs2154319	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p34.2	SCMH1	rs2154319-T	0.75	2E-12		0.03	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
903	chr1	41748896	41748897	rs12025777	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.2	NR	rs12025777-T	NR	6E-10		6.19	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
903	chr1	41748896	41748897	rs12025777	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	ENSG00000235358	rs12025777-T	NR	1E-8		5.725	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
903	chr1	41748896	41748897	rs12025777	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	ENSG00000235358	rs12025777-T	NR	5E-11		0.03572911	[0.025-0.046] unit decrease	Affymetrix [NR]	N
903	chr1	41750647	41750648	rs12035012	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p34.2		rs12035012-?	NR	1E-14				NR [7857346] (imputed)	N
903	chr1	41750647	41750648	rs12035012	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.2	NR	rs12035012-A	NR	4E-16		8.149	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
903	chr1	41750647	41750648	rs12035012	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	ENSG00000235358	rs12035012-A	NR	1E-18		0.031885415	[0.025-0.039] unit decrease	Affymetrix [NR]	N
903	chr1	41752464	41752465	rs34762587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p34.2		rs34762587-?	NR	6E-8				NR [~ 8900000] (imputed)	N
903	chr1	41757717	41757718	rs1343776	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p34.2		rs1343776-?	NR	2E-13		0.0180762	[0.013-0.023] unit increase	NR [6912294] (imputed)	N
903	chr1	41757992	41757993	rs1343775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.2	Intergenic	rs1343775-A	0.7823	2E-31	(MTAG)	0.0253	[0.021-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr1	41757992	41757993	rs1343775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.2	Intergenic	rs1343775-A	0.7781	1E-29	(MTAG)	0.0311	[0.026-0.037] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr1	41757992	41757993	rs1343775	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	ENSG00000235358	rs1343775-A	NR	8E-17		8.339	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
903	chr1	41761219	41761220	rs12030183	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p34.2	FOXO6	rs12030183-T	0.6789	4E-12		0.0149065815	[0.011-0.019] unit increase	Affymetrix [11514654] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs12028010-?	NR	9E-8				NR [~ 8900000] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p34.2		rs12028010-?	NR	3E-12				NR [~ 8900000] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.2	Intergenic	rs12028010-T	0.7736	1E-35	(MTAG)	0.0246	[0.021-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p34.2	Intergenic	rs12028010-T	0.7736	4E-14		0.0205	[0.015-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs12028010-T	0.7711	1E-22		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
903	chr1	41764470	41764471	rs12028010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.2	Intergenic	rs12028010-T	0.7711	2E-30	(MTAG)	0.0179	[0.015-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr1	41772956	41772957	rs11209838	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p34.2		rs11209838-C	0.685	6E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
903	chr1	41773501	41773502	rs12744310	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	1p34.2	FOXO6	rs12744310-T	0.208	4E-8		5.51	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
903	chr1	41773501	41773502	rs12744310	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p34.2	ENSG00000235358	rs12744310-?	NR	2E-10		6.398	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
903	chr1	41773501	41773502	rs12744310	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p34.2	ENSG00000235358	rs12744310-?	NR	8E-8		5.36	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
903	chr1	41773501	41773502	rs12744310	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	1p34.2	SCMH1, FOXO6	rs12744310-T	0.2227	4E-9		5.876	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
903	chr1	41773501	41773502	rs12744310	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	1p34.2	SCMH1, FOXO6	rs12744310-T	0.2227	1E-8	(Adults)	5.724	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
903	chr1	41776622	41776623	rs12755632	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p34.2	NR	rs12755632-G	0.316	3E-9		0.00691044	[0.0046-0.0092] unit decrease	NR [9732723] (imputed)	N
903	chr1	41776622	41776623	rs12755632	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p34.2	NR	rs12755632-G	0.316	2E-8		0.015405137	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
903	chr1	41777988	41777989	rs12036554	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p34.2		rs12036554-G	0.21	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
903	chr1	41781150	41781151	rs1892419	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.2	NR	rs1892419-T	0.223658	7E-16		0.061086003	[0.046-0.076] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
903	chr1	41781150	41781151	rs1892419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p34.2	Intergenic	rs1892419-T	0.7699	3E-16		0.0276	[0.021-0.034] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
903	chr1	41798667	41798668	rs11209894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs11209894-A	0.1377	8E-9		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
903	chr1	41811248	41811249	rs7540857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs7540857-?	NR	1E-9				NR [~ 8900000] (imputed)	N
904	chr1	41830085	41830086	rs56044892	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p34.2	NR	rs56044892-T	0.2107	3E-10		0.015388	[0.011-0.02] unit increase	Affymetrix [16668957] (imputed)	N
904	chr1	41830085	41830086	rs56044892	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p34.2	NR	rs56044892-T	0.2021	5E-9		0.01624489	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
904	chr1	41832296	41832297	rs10218712	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	FOXO6	rs10218712-T	NR	9E-9		5.753	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
904	chr1	41832296	41832297	rs10218712	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.2	NR	rs10218712-T	NR	4E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
904	chr1	41832860	41832861	rs61774743	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	FOXO6	rs61774743-T	NR	1E-9		0.020074416	[0.014-0.027] unit decrease	Affymetrix [NR]	N
904	chr1	41833088	41833089	rs2364543	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	FOXO6	rs2364543-T	NR	7E-10		0.019326378	[0.013-0.025] unit increase	Affymetrix [NR]	N
904	chr1	41833161	41833162	rs2364544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs2364544-A	0.3912	3E-13		0.0105	[0.0078-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
904	chr1	41835632	41835633	rs4636447	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.2	NR	rs4636447-A	NR	4E-10		6.274	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
904	chr1	41835684	41835685	rs7522116	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1p34.2	NR	rs7522116-T	NR	7E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
904	chr1	41835684	41835685	rs7522116	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p34.2		rs7522116-?	NR	3E-11		0.0136437	[0.0096-0.0177] unit increase	NR [6912294] (imputed)	N
904	chr1	41835804	41835805	rs12029493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.2	Intergenic	rs12029493-T	0.857	7E-27		0.0299	[0.024-0.035] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
904	chr1	41837172	41837173	rs56233836	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	FOXO6	rs56233836-T	NR	1E-11		0.029028073	[0.021-0.037] unit decrease	Affymetrix [NR]	N
904	chr1	41839821	41839822	rs4660531	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	1p34.2	intergenic	rs4660531-T	NR	3E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
904	chr1	41843125	41843126	rs78412834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p34.2		rs78412834-A	NR	4E-8		0.03	[0.019-0.041] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
904	chr1	41843439	41843440	rs11209970	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p34.2	FOXO6	rs11209970-?	NR	1E-8		0.012434894	[0.0081-0.0167] unit increase	NR [7306098]	N
904	chr1	41849339	41849340	rs1892423	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	FOXO6	rs1892423-A	NR	2E-9		6.036	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
904	chr1	41851414	41851415	rs11209976	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	FOXO6	rs11209976-T	NR	2E-11		0.02064673	[0.015-0.027] unit increase	Affymetrix [NR]	N
904	chr1	41854945	41854946	rs2226263	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p34.2	FOXO6, RNA5SP45, EDN2, HIVEP3	rs2226263-T	NR	9E-7	(wake after sleep onset, weekdays)	0.2787	[0.17-0.39] unit decrease	Affymetrix [7141204] (imputed)	N
904	chr1	41858649	41858650	rs34351096	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Emotional lability	3,268 European ancestry individuals	NA	1p34.2	NR	rs34351096-CT	0.547	8E-7		0.1278	[0.077-0.178] unit increase	Illumina [8348463] (imputed)	N
904	chr1	41865292	41865293	rs11210029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p34.2		rs11210029-?	NR	7E-10				NR [~ 8900000] (imputed)	N
904	chr1	41865292	41865293	rs11210029	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	1p34.2	FOXO6	rs11210029-A	0.6322	9E-11		0.203	[0.14-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
904	chr1	41875950	41875951	rs2997341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.2	Intergenic	rs2997341-T	0.3018	2E-15	(MTAG)	0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
904	chr1	41875950	41875951	rs2997341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.2	Intergenic	rs2997341-T	0.3021	8E-12	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
904	chr1	41876036	41876037	rs2801966	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1p34.2	FOXO6	rs2801966-A	0.9419	7E-7		0.0952	[0.058-0.133] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
904	chr1	41898580	41898581	rs1937999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p34.2		rs1937999-?	NR	3E-9				NR [~ 8900000] (imputed)	N
904	chr1	41909180	41909181	rs34447302	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p34.2	NR	rs34447302-T	0.382068	5E-12		0.0216922	[0.016-0.028] unit increase	NR [19129689] (imputed)	N
905	chr1	41943794	41943795	rs11572377	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	1p34.2	EDN2, RNA5SP45	rs11572377-C	0.01689	6E-7		13.0	[7.89-18.11] unit increase	Illumina [up to 4929806] (imputed)	N
905	chr1	41951382	41951383	rs3768274	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	1p34.2		rs3768274-C	0.498628	4E-10		0.0415254	[0.028-0.055] decrease	Affymetrix [NR]	N
905	chr1	41951382	41951383	rs3768274	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	1p34.2		rs3768274-C	0.499027	1E-9		0.0428961	[0.028-0.058] decrease	Affymetrix [NR]	N
905	chr1	41952596	41952597	rs3754287	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1p34.2	EDN2, HIVEP3	rs3754287-T	0.142571693	2E-6		1.1387107	[1.079781533-1.20085612]	Illumina [10439017] (imputed)	N
905	chr1	41955713	41955714	rs12751675	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p34.2	EDN2	rs12751675-G	0.75	2E-13		0.56	[0.4-0.72] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
905	chr1	41955713	41955714	rs12751675	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p34.2	EDN2	rs12751675-G	0.7498	3E-13		0.5685	[0.42-0.72] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
905	chr1	41971226	41971227	rs12043801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p34.2		rs12043801-?	NR	6E-12				NR [~ 8900000] (imputed)	N
905	chr1	41973094	41973095	rs2810587	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p34.2		rs2810587-?	NR	4E-11		0.0159278	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
905	chr1	41987867	41987868	rs654950	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1p34.2	HIVEP3	rs654950-C	NR	9E-7	(Pi10, All)	0.011	[0.00022-0.02178] unit decrease	Illumina [7600000] (imputed)	N
905	chr1	41997194	41997195	rs670196	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	1p34.2		rs670196-G	NR	1E-7		1.8279	[1.17-2.49] unit decrease	Illumina [NR] (imputed)	N
905	chr1	41997763	41997764	rs181270898	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.2	NR	rs181270898-A	0.0298	5E-7	(EA)	0.097	[0.059-0.135] unit decrease	Illumina [~ 11800000] (imputed)	N
905	chr1	41999394	41999395	rs4660545	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p34.2	HIVEP3	rs4660545-T	NR	7E-6		0.39582822	[0.22-0.57] unit decrease	Illumina [> 6200000] (imputed)	N
905	chr1	42069525	42069526	rs35329209	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p34.2	HIVEP3	rs35329209-T	0.915073	5E-11		0.0216984	[0.015-0.028] unit decrease	NR [13737936] (imputed)	N
906	chr1	42093014	42093015	rs752010	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	1p34.2	HIVEP3	rs752010-?	NR	2E-6	(Dominant)	1.7544	[1.41-2.22]	Affymetrix, Illumina [1621689] (imputed)	N
906	chr1	42093339	42093340	rs2077172	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p34.2	NR	rs2077172-?	NR	5E-6		0.080863	[0.046-0.116] unit decrease	NR [13958389] (imputed)	N
906	chr1	42110887	42110888	rs6696511	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	1p34.2		rs6696511-T	0.382	1E-45	(EA)	0.109	[0.094-0.124] unit increase	Illumina [11532091] (imputed)	N
906	chr1	42117370	42117371	rs6701758	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.2	EDN2	rs6701758-?	NR	2E-6	(TAG 58:6)	0.51690525	[0.3-0.73] unit increase	Affymetrix [at least 2500000] (imputed)	N
906	chr1	42137310	42137311	rs79724016	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.2	HIVEP3	rs79724016-T	0.97	4E-8	(EA)	1.0752687	[1.03-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
906	chr1	42146294	42146295	rs731862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs731862-?	NR	1E-13				NR [~ 8900000] (imputed)	N
906	chr1	42168538	42168539	rs56212190	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1p34.2	NR	rs56212190-C		1E-6		0.181	[0.11-0.25] SD units decrease	NR [10700000] (imputed)	N
906	chr1	42198299	42198300	rs710241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs710241-A	0.406158	1E-12				Affymetrix, Illumina [24649327] (imputed)	N
906	chr1	42198575	42198576	rs710239	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.2	NR	rs710239-A	0.333354	2E-15		0.015649	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
907	chr1	42222839	42222840	rs12759327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs12759327-A	0.370454	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
907	chr1	42222839	42222840	rs12759327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p34.2	NR	rs12759327-A	0.353072	1E-17		0.017574	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
907	chr1	42235795	42235796	rs2137364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.2	HIVEP3	rs2137364-T	0.373498	8E-12		0.015607389	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr1	42235795	42235796	rs2137364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.2	HIVEP3	rs2137364-T	0.37344	6E-14		0.017195828	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr1	42237292	42237293	rs2013105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p34.2	NR	rs2013105-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
907	chr1	42238530	42238531	rs1969213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p34.2	NR	rs1969213-A	0.528164	3E-11		0.00511254	[0.0035-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
907	chr1	42238530	42238531	rs1969213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p34.2	NR	rs1969213-A	0.528164	2E-8		0.00470522	[0.0029-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
907	chr1	42255493	42255494	rs1877454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p34.2		rs1877454-T	NR	4E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
907	chr1	42273652	42273653	rs12563071	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1p34.2	HIVEP3	rs12563071-T	NR	3E-8	(UBISYN-PWY_superpathway_of_ubiquinol-8_biosynthesis_(prokaryotic))	5.5680895	NR Z-score decrease	Illumina [8100000] (imputed)	N
907	chr1	42286929	42286930	rs78295797	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.2	NR	rs78295797-A	0.0241	9E-6	(EA)	0.0953	[0.053-0.137] unit decrease	Illumina [~ 11800000] (imputed)	N
907	chr1	42297123	42297124	rs349423	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	1p34.2	HIVEP3	rs349423-A	0.03	9E-6		2.52	[1.67-3.79]	Illumina [1795103]	N
907	chr1	42318867	42318868	rs1866758	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	1p34.2	HIVEP3	rs1866758-?	NR	5E-11		0.09	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
907	chr1	42331211	42331212	rs6680922	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p34.2	NR	rs6680922-C		1E-17		0.1	[0.08-0.12] unit increase	NR [NR]	N
907	chr1	42333602	42333603	rs698047	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	1p34.2	HIVEP3	rs698047-G	0.46	1E-9		1.26	NR	Affymetrix, Illumina [4996193] (imputed)	N
907	chr1	42333602	42333603	rs698047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.2		rs698047-?	NR	2E-9				NR [~ 8900000] (imputed)	N
907	chr1	42333630	42333631	rs710230	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Erysipelatoclostridium id.11381)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1p34.2		rs710230-T	NR	6E-7		4.9808307	z score increase	Affymetrix, Illumina [NR] (imputed)	N
907	chr1	42334792	42334793	rs6670896	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p34.2	HIVEP3	rs6670896-?		5E-36				Affymetrix, Illumina [NR] (imputed)	N
908	chr1	42338786	42338787	rs12410469	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p34.2	NR	rs12410469-?	NR	5E-8		0.118453	[0.076-0.161] unit decrease	NR [13958389] (imputed)	N
908	chr1	42345722	42345723	rs11210537	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1p34.2	HIVEP3	rs11210537-A	0.3393	6E-9		5.824	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
908	chr1	42345811	42345812	rs796725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs796725-?	NR	1E-24				NR [~ 8900000] (imputed)	N
908	chr1	42356249	42356250	rs12745534	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	1p34.2	HIVEP3	rs12745534-?	0.87	5E-6		2.2222223	[1.59-3.12]	Affymetrix, Illumina [7000000] (imputed)	N
908	chr1	42364876	42364877	rs1408945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p34.2		rs1408945-T	NR	3E-13		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
908	chr1	42364876	42364877	rs1408945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p34.2		rs1408945-T	NR	7E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
908	chr1	42365547	42365548	rs783625	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p34.2		rs783625-C	0.44	3E-12				Affymetrix [10369434] (imputed)	N
908	chr1	42366197	42366198	rs812487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs812487-A	0.55148	8E-13				Affymetrix, Illumina [23467995] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		3E-8		0.301	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		1E-6	(EA)	0.29	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		3E-14		0.289	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		8E-11		0.235	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		1E-7	(EA)	0.214	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368034	42368035	rs783621	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p34.2	HIVEP3	rs783621-A		3E-16		0.207	unit increase	Affymetrix [at least 2696785] (imputed)	N
908	chr1	42368338	42368339	rs2786487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p34.2		rs2786487-C	NR	4E-8		0.0113	[0.0072-0.0154] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
908	chr1	42368338	42368339	rs2786487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p34.2		rs2786487-C	NR	2E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
908	chr1	42370786	42370787	rs1004870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p34.2	HIVEP3	rs1004870-T	0.588718	6E-29		0.025095344	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
908	chr1	42370786	42370787	rs1004870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p34.2	HIVEP3	rs1004870-T	0.588733	1E-33		0.027136825	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
908	chr1	42370786	42370787	rs1004870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs1004870-T	0.57574	3E-37				Affymetrix, Illumina [19872809] (imputed)	N
908	chr1	42370786	42370787	rs1004870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p34.2	NR	rs1004870-T	0.588952	1E-38		0.026184	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
908	chr1	42370786	42370787	rs1004870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p34.2		rs1004870-?	NR	5E-35				NR [~ 8900000] (imputed)	N
908	chr1	42371413	42371414	rs2147904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p34.2		rs2147904-C	NR	4E-22		0.016	[0.013-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
908	chr1	42371413	42371414	rs2147904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p34.2	HIVEP3	rs2147904-C	0.5645	2E-12		0.02539583	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr1	42371413	42371414	rs2147904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p34.2	HIVEP3	rs2147904-C	0.5644	1E-9		0.02184422	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
908	chr1	42371413	42371414	rs2147904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p34.2	HIVEP3	rs2147904-C	0.5644	2E-13		0.0264802	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr1	42371413	42371414	rs2147904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p34.2	HIVEP3	rs2147904-C	0.5644	2E-12		0.02532085	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr1	42371413	42371414	rs2147904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p34.2	HIVEP3	rs2147904-C	0.5644	1E-14		0.02778537	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr1	42375472	42375473	rs12034218	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.2	HIVEP3	rs12034218-T	0.4093	1E-11		0.2434	[0.17-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
908	chr1	42375472	42375473	rs12034218	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.2	HIVEP3	rs12034218-T	0.4104	5E-10		0.1666	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
908	chr1	42383669	42383670	rs34538877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p34.2		rs34538877-?	NR	2E-18				NR [~ 8900000] (imputed)	N
908	chr1	42389814	42389815	rs71654213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p34.2		rs71654213-T	NR	9E-14		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
908	chr1	42407228	42407229	rs4660586	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p34.2	HIVEP3	rs4660586-C	0.260631	1E-8		0.00896084	[0.0059-0.012] unit increase	Affymetrix [12370749]	N
908	chr1	42408069	42408070	rs7515635	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p34.2	HIVEP3	rs7515635-T	0.468	5E-12		0.307	[0.22-0.39] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
908	chr1	42408069	42408070	rs7515635	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p34.2	HIVEP3	rs7515635-T	0.468	2E-7		0.1365	[0.085-0.188] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
908	chr1	42408158	42408159	rs7523668	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.2	NR	rs7523668-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
908	chr1	42408158	42408159	rs7523668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p34.2		rs7523668-?	NR	8E-8				NR [~ 8900000] (imputed)	N
908	chr1	42408158	42408159	rs7523668	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p34.2	NA	rs7523668-A	0.4443	7E-10		0.0105	[0.0072-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
908	chr1	42411763	42411764	rs12406370	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p34.2	HIVEP3	rs12406370-T	0.172	4E-8		0.0086	[0.0055-0.0117] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
908	chr1	42421993	42421994	rs583077	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p34.2	NR	rs583077-G	0.4582	6E-11		0.016293433	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
908	chr1	42453316	42453317	rs642112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p34.2		rs642112-T	NR	3E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
909	chr1	42470273	42470274	rs238675	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p34.2		rs238675-G	0.26	5E-9				NR [NR] (imputed)	N
909	chr1	42470273	42470274	rs238675	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1p34.2		rs238675-G	0.26	4E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
909	chr1	42470273	42470274	rs238675	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p34.2		rs238675-G	0.26	4E-12		0.012	% increase	NR [NR] (imputed)	N
909	chr1	42502280	42502281	rs1642645	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	1p34.2	HIVEP3	rs1642645-?	NR	8E-7		1.8843181	[1.47-2.42]	Illumina [at least 4756722] (imputed)	N
909	chr1	42507012	42507013	rs12758407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p34.2		rs12758407-?	NR	9E-10				NR [~ 8900000] (imputed)	N
909	chr1	42562593	42562594	rs59038405	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p34.2	GUCA2B	rs59038405-A	0.510226	4E-9		0.0116146	[0.0078-0.0155] unit decrease	Affymetrix [NR] (imputed)	N
911	chr1	42766282	42766283	rs35011283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p34.2		rs35011283-?	NR	2E-8				NR [~ 8900000] (imputed)	N
912	chr1	42945699	42945700	rs138701026	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p34.2	NR	rs138701026-?	NR	2E-8				Illumina [7760689] (imputed)	N
913	chr1	43001754	43001755	rs61777387	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.2	CCDC30	rs61777387-T	0.2982	6E-12		0.1479	[0.11-0.19] mmHg increase	Affymetrix [NR] (imputed)	N
913	chr1	43037555	43037556	rs72659998	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p34.2	CCDC30	rs72659998-T	0.1539	9E-16		0.1941	[0.15-0.24] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
913	chr1	43058123	43058124	rs113319441	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.2	NR	rs113319441-T	0.0308	6E-6	(EA)	0.0908	[0.051-0.13] unit decrease	Illumina [~ 11800000] (imputed)	N
913	chr1	43066593	43066594	rs12116637	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.2	CCDC30	rs12116637-A	0.2801	2E-9		0.1811	[0.12-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
913	chr1	43081030	43081031	rs10789418	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	1p34.2	Intergenic	rs10789418-T	NR	2E-6	(adjusted for total body fat)	0.294	[0.17-0.42] unit increase	Illumina [8511049] (imputed)	N
913	chr1	43107174	43107175	rs72661322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1p34.2		rs72661322-?	NR	9E-9				NR [~ 8900000] (imputed)	N
915	chr1	43289257	43289258	rs72666872	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	1p34.2	ERMAP	rs72666872-A	NR	6E-6	(adjusted for total body fat)	0.281	[0.16-0.4] unit decrease	Illumina [8511049] (imputed)	N
915	chr1	43308262	43308263	rs34441268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.2	ERMAP	rs34441268-A	0.00427999999999995	1E-11		0.11480822	[0.082-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr1	43311562	43311563	rs12406643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.2		rs12406643-?	NR	5E-12				NR [~ 8900000] (imputed)	N
915	chr1	43359018	43359019	rs80091440	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	1p34.2	MKRN8P	rs80091440-A	0.0301	5E-6		2.501	[1.688-3.706]	Affymetrix, Illumina [14074516] (imputed)	N
915	chr1	43372961	43372962	rs80136426	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1p34.2	intergenic	rs80136426-T	0.0016	4E-6		5.13202	NR	Affymetrix, Illumina [30341632] (imputed)	N
916	chr1	43398395	43398396	rs3820548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p34.2	NR	rs3820548-G	NR	2E-11		0.0181	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
916	chr1	43408278	43408279	rs6657798	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	1p34.2	NR	rs6657798-?	NR	7E-11				Affymetrix, Illumina [6211016] (imputed)	N
916	chr1	43408278	43408279	rs6657798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.2		rs6657798-?	NR	6E-9				NR [~ 8900000] (imputed)	N
916	chr1	43409178	43409179	rs12718444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p34.2		rs12718444-T	NR	2E-11		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
916	chr1	43409178	43409179	rs12718444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs12718444-?	NR	2E-13				NR [~ 8900000] (imputed)	N
916	chr1	43409419	43409420	rs35022307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.2	SLC2A1	rs35022307-T	0.172764	3E-11		0.019438965	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43409419	43409420	rs35022307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p34.2	SLC2A1	rs35022307-T	0.172766	9E-17		0.024279775	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43412454	43412455	rs900835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs900835-T	0.175798	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
916	chr1	43412454	43412455	rs900835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.2	NR	rs900835-T	0.174387	7E-16		0.019965	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
916	chr1	43413211	43413212	rs1108902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p34.2	NR	rs1108902-A	0.17344	1E-19		0.023356	[0.018-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
916	chr1	43414045	43414046	rs61296119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p34.2		rs61296119-C	NR	5E-16		0.0207	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
916	chr1	43414368	43414369	rs74742820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.2	SLC2A1	rs74742820-C	0.16919	2E-9		0.017890936	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43416513	43416514	rs10890232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.2	SLC2A1	rs10890232-T	0.223585	5E-44		0.036908835	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43416513	43416514	rs10890232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p34.2	SLC2A1	rs10890232-T	0.223643	5E-9		0.015677728	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43416513	43416514	rs10890232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs10890232-C	0.75898	2E-45				Affymetrix, Illumina [22063850] (imputed)	N
916	chr1	43416513	43416514	rs10890232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p34.2	NR	rs10890232-C	0.771886	6E-49		0.033488	[0.029-0.038] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
916	chr1	43419704	43419705	rs17387886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs17387886-C	0.173868	3E-28				Affymetrix, Illumina [23467995] (imputed)	N
916	chr1	43419704	43419705	rs17387886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p34.2	NR	rs17387886-C	0.173567	1E-28		0.027781	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
916	chr1	43420153	43420154	rs3768044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs3768044-C	0.251064	6E-25				Affymetrix, Illumina [21126107] (imputed)	N
916	chr1	43420153	43420154	rs3768044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p34.2	NR	rs3768044-C	0.223676	3E-26		0.025392	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
916	chr1	43421956	43421970	rs200895692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p34.2	SLC2A1	rs200895692-C	0.17045	4E-11		0.019551797	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43421956	43421970	rs200895692	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p34.2	SLC2A1	rs200895692-C	0.1722	1E-10		0.030672	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr1	43423621	43423622	rs3754224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.2		rs3754224-C	NR	2E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
916	chr1	43423621	43423622	rs3754224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.2	SLC2A1	rs3754224-C	0.268772	2E-16		0.021484679	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43423621	43423622	rs3754224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p34.2	SLC2A1	rs3754224-C	0.268775	2E-15		0.021151844	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43423621	43423622	rs3754224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.2	SLC2A1	rs3754224-C	0.268806	7E-10		0.0175623	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43423621	43423622	rs3754224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs3754224-C	0.276771	6E-15				Affymetrix, Illumina [24246363] (imputed)	N
916	chr1	43423621	43423622	rs3754224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p34.2	NR	rs3754224-C	0.27067	4E-15		0.01633	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
916	chr1	43423931	43423932	rs80200046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.2		rs80200046-A	NR	3E-16		0.0227	[0.017-0.028] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
916	chr1	43423931	43423932	rs80200046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs80200046-A	0.173173	3E-19				Affymetrix, Illumina [23114412] (imputed)	N
916	chr1	43424050	43424051	rs114530232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.2	SLC2A1	rs114530232-G	0.172286	8E-15		0.022785505	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43424050	43424051	rs114530232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.2	SLC2A1	rs114530232-G	0.172256	3E-20		0.027001912	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43426377	43426378	rs3806400	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1p34.2	SLC2A1, SLC2A1-AS1	rs3806400-T	0.114	1E-17		0.31	[0.24-0.38] unit decrease	Affymetrix [339439]	N
916	chr1	43427217	43427218	rs710218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p34.2	SLC2A1-AS1	rs710218-A	0.223808	4E-11		0.017646573	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43427217	43427218	rs710218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p34.2	SLC2A1-AS1	rs710218-A	0.223809	1E-11		0.018061124	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43427217	43427218	rs710218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p34.2	SLC2A1-AS1	rs710218-A	0.223901	3E-60		0.04613882	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43427217	43427218	rs710218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p34.2	SLC2A1-AS1	rs710218-A	0.223764	4E-28		0.0288279	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr1	43427217	43427218	rs710218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.2		rs710218-?	NR	1E-46				NR [~ 8900000] (imputed)	N
916	chr1	43428756	43428757	rs710216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p34.2	SLC2A1-AS1	rs710216-G	0.2095	1E-16		0.03605805	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr1	43432135	43432136	rs9439066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p34.2		rs9439066-T	NR	9E-12		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
916	chr1	43436050	43436051	rs841572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p34.2		rs841572-A	NR	2E-40		0.0297	[0.025-0.034] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
916	chr1	43436050	43436051	rs841572	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	1p34.2	SLC2A1-AS1	rs841572-A	0.4081	5E-7		0.0089	[0.0054-0.0124] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
916	chr1	43436050	43436051	rs841572	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p34.2	NR	rs841572-A	0.4069	2E-35		0.002805	[0.0024-0.0033] unit increase	Affymetrix [NR] (imputed)	N
916	chr1	43436368	43436369	rs841573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.2	SLC2A1-AS1	rs841573-T	0.208786	9E-78		0.05322443	[0.048-0.059] unit increase	Affymetrix [93095623] (imputed)	N
916	chr1	43438398	43438399	rs58062906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1p34.2		rs58062906-T	NR	1E-8		0.0756	[0.05-0.101] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
916	chr1	43439281	43439282	rs710214	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p34.2	SLC2A1-AS1	rs710214-T	NR	2E-18		0.0413256	[0.032-0.051] unit increase	Affymetrix [16832071] (imputed)	N
916	chr1	43440200	43440201	rs3738516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p34.2	NR	rs3738516-A	NR	2E-11		0.0208	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
916	chr1	43456766	43456767	rs12401656	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p34.2	FLJ32224, SLC2A1	rs12401656-G	0.864985	3E-11		0.025183	[0.018-0.033] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
916	chr1	43458457	43458458	rs12404679	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	1p34.2	NR	rs12404679-T	0.14	4E-8		0.026	[0.016-0.036] z score decrease	Affymetrix [up to 10400000] (imputed)	N
916	chr1	43458457	43458458	rs12404679	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	1p34.2	intergenic	rs12404679-C	0.937	4E-7		0.7003	[0.43-0.97] unit increase	Illumina [at least 4683137] (imputed)	N
916	chr1	43492480	43492481	rs111455041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1p34.2	RNU6-870P	rs111455041-T	0.4033	8E-6		0.0676	[0.038-0.097] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
916	chr1	43492480	43492481	rs111455041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1p34.2	RNU6-870P	rs111455041-T	0.4057	3E-6		0.0611	[0.035-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
917	chr1	43568132	43568133	rs7512851	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	1p34.2		rs7512851-A	NR	5E-7		4.3840423	NR	Affymetrix [7846216] (imputed)	N
917	chr1	43596383	43596384	rs16830359	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1p34.2	SLC2A1	rs16830359-?	NR	1E-7	(additive, recessive)			Affymetrix [361034]	N
917	chr1	43611452	43611453	rs511875	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p34.2	NR	rs511875-?	NR	4E-40				Affymetrix [NR]	N
917	chr1	43645410	43645411	rs621559	21460395	Gu J	2011-04-02	Cancer Prev Res (Phila)	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 individuals	1,160 individuals	1p34.2	WDR65	rs621559-?	NR	2E-6		0.16	[NR] unit increase	Illumina [312531]	N
918	chr1	43677474	43677475	rs12134739	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.2	EBNA1BP2	rs12134739-?	NR	7E-6	(isoleucine)	0.69697773	[0.39-1] unit increase	Affymetrix [at least 2500000] (imputed)	N
918	chr1	43688549	43688550	rs150404479	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	1p34.2	NR	rs150404479-?	NR	1E-6				NR [up to 8466825] (imputed)	N
918	chr1	43702315	43702316	rs3862225	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p34.2	WDR65	rs3862225-C	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
918	chr1	43708124	43708124	rs140969663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p34.2		rs140969663-TTGGA	NR	6E-15		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
918	chr1	43725243	43725244	rs1210898	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.2	NR	rs1210898-T	NR	3E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
918	chr1	43741712	43741713	rs2991996	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	1p34.2		rs2991996-A	0.43	8E-20		0.075	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
918	chr1	43760235	43760236	rs7549876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.2		rs7549876-?	NR	6E-9				NR [~ 8900000] (imputed)	N
918	chr1	43761505	43761517	rs542658159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.2	NR	rs542658159-A	0.631394	3E-11		0.0156258	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr1	43761505	43761517	rs542658159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.2		rs542658159-A	0.631388	6E-10		0.014614659	[0.01-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr1	43761650	43761651	rs4660253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p34.2		rs4660253-T	NR	2E-17		0.0148	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
918	chr1	43761650	43761651	rs4660253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p34.2		rs4660253-T	NR	2E-13		0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p34.2		rs4660253-T	0.617593	1E-17		0.019771883	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p34.2		rs4660253-T	0.617588	2E-15		0.018342465	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs4660253-T	0.649735	2E-19				Affymetrix, Illumina [24653286] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p34.2	NR	rs4660253-T	0.617493	2E-21		0.018513	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs4660253-T	0.648248	8E-15				Affymetrix, Illumina [24558453] (imputed)	N
918	chr1	43761650	43761651	rs4660253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p34.2	NR	rs4660253-T	0.617445	4E-17		0.016408	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
918	chr1	43764083	43764084	rs3120047	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p34.2	TIE1	rs3120047-G		1E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
918	chr1	43764083	43764084	rs3120047	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p34.2	NR	rs3120047-?	NR	1E-8	(right pallidum)			NR [9227495] (imputed)	N
918	chr1	43764164	43764165	rs3120124	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p34.2	NR	rs3120124-?	NR	5E-11	(left pallidum)			NR [9227495] (imputed)	N
918	chr1	43765088	43765089	rs1209384	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.2	TIE1	rs1209384-G	0.594375	5E-16	(TIE1, 2844_53_2)	0.20010738	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
918	chr1	43766425	43766426	rs3768046	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIE1	5,364 Icelandic ancestry individuals	NA	1p34.2		rs3768046-A	0.4028	1E-30		0.216405	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
918	chr1	43766425	43766426	rs3768046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p34.2		rs3768046-G	NR	9E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
918	chr1	43770517	43770518	rs12022684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.2		rs12022684-?	NR	1E-9				NR [~ 8900000] (imputed)	N
918	chr1	43771879	43771880	rs74069551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	1p34.2	NR	rs74069551-G	0.969123	8E-17		0.283557	[0.22-0.35] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
918	chr1	43773032	43773033	rs2275180	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.2	TIE1	rs2275180-G	0.623	5E-24	(Tyrosine-protein kinase receptor Tie-1, soluble, TIE1.2844.53.2)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
918	chr1	43777416	43777417	rs140190628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2	TIE1	rs140190628-T	4.6400000000002E-4	8E-28		0.6516512	[0.53-0.77] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43787436	43787437	rs11210834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.2	TIE1	rs11210834-G	0.23877	8E-11		0.016993908	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr1	43803806	43803807	rs17292650	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	1p34.2		rs17292650-T	0.9903	2E-11		0.3408	[0.24-0.44] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr1	43803806	43803807	rs17292650	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	1p34.2		rs17292650-T	0.9584	8E-14		0.2101	[0.16-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr1	43803898	43803899	rs61754776	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1p34.2		rs61754776-?	NR	2E-12		0.36071	[0.25-0.47] unit increase	NR [9800000] (imputed)	N
919	chr1	43804304	43804305	rs28928907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.2	MPL	rs28928907-C	5.66999999999984E-4	6E-24		0.4761017	[0.38-0.57] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43804339	43804340	rs12731981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.2	MPL	rs12731981-A	0.0328619999999999	9E-17		0.05234668	[0.04-0.065] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43804339	43804340	rs12731981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2	MPL	rs12731981-A	0.032866	5E-13		0.045439586	[0.033-0.058] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43804375	43804376	rs587778515	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1p34.2		rs587778515-?	NR	4E-11		0.42207	[0.3-0.55] unit increase	NR [9800000] (imputed)	N
919	chr1	43814626	43814627	rs754859909	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1p34.2		rs754859909-?	NR	1E-11		0.742133	[0.52-0.96] unit increase	NR [9800000] (imputed)	N
919	chr1	43814732	43814733	rs532784633	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	1p34.2		rs532784633-T	0.0034	3E-9		19.53	[12.85-26.21] unit decrease	NR [NR]	N
919	chr1	43816531	43816532	rs839996	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p34.2	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs839996-?		1E-11				NR [7428630] (imputed)	N
919	chr1	43818442	43818443	rs756235478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1p34.2		rs756235478-G	0.006631	8E-31		0.246486	[0.2-0.29] unit increase	Illumina [13478928] (imputed)	N
919	chr1	43828735	43828736	rs45461499	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	1p34.2	CDC20	rs45461499-A	0.002	4E-9		4.6		Affymetrix [at least 751455]	N
919	chr1	43836927	43836928	rs652941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p34.2	NR	rs652941-C	NR	4E-11		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
919	chr1	43840981	43840982	rs75139539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.2		rs75139539-T	0.033075	1E-16		0.05202058	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43840981	43840982	rs75139539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.2		rs75139539-T	0.033066	4E-15		0.04925549	[0.037-0.062] unit increase	Affymetrix [93095623] (imputed)	N
919	chr1	43840981	43840982	rs75139539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs75139539-T	0.0295344	8E-33				Affymetrix, Illumina [24588908] (imputed)	N
919	chr1	43840981	43840982	rs75139539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p34.2	intergenic	rs75139539-T	0.0322	2E-9		0.06257873	[0.042-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr1	43842362	43842362	rs143796540	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1p34.2	NR	rs143796540-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr1	43856409	43856410	rs839755	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p34.2	SZT2	rs839755-A	0.6191	1E-19		0.2274	[0.18-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
919	chr1	43862157	43862158	rs839758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p34.2		rs839758-G	NR	1E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
919	chr1	43862157	43862158	rs839758	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p34.2	NR	rs839758-?	NR	4E-8	(right pallidum)			NR [9227495] (imputed)	N
919	chr1	43863856	43863857	rs839761	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p34.2	NR	rs839761-?	NR	5E-9	(left pallidum)			NR [9227495] (imputed)	N
919	chr1	43878711	43878712	rs2494997	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.2	Intergenic	rs2494997-C	0.652	4E-11	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
919	chr1	43886493	43886494	rs2782643	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs2782643-T	0.4158	1E-16		0.17970018	[0.14-0.22] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
919	chr1	43886493	43886494	rs2782643	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs2782643-T	0.416	1E-10		6.4134	z score increase	Affymetrix, Illumina [239843] (imputed)	N
919	chr1	43886493	43886494	rs2782643	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.2		rs2782643-T	0.4158	2E-14		0.10759776	[0.08-0.135] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
919	chr1	43886493	43886494	rs2782643	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p34.2	SZT2	rs2782643-T		2E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
919	chr1	43892276	43892277	rs576674585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p34.2	NR	rs576674585-A	0.999445	1E-28		0.496125	[0.41-0.58] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
920	chr1	43916641	43916642	rs6954	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.2	SZT2	rs6954-T	0.3853	2E-8		0.1512	[0.098-0.204] mmHg decrease	Affymetrix [NR] (imputed)	N
920	chr1	43917408	43917409	rs2251804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p34.2		rs2251804-C	NR	1E-13		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
920	chr1	43917408	43917409	rs2251804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.2	SZT2	rs2251804-C	0.42489	6E-11		0.0146210585	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
920	chr1	43919485	43919486	rs182798940	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p34.2	Intergenic	rs182798940-T	NR	7E-7	(between families)	4.971	unit increase	Affymetrix [up to 15107142] (imputed)	N
920	chr1	43926304	43926305	rs2782652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p34.2		rs2782652-?	NR	7E-19				NR [~ 8900000] (imputed)	N
920	chr1	43930737	43930738	rs2842198	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	1p34.2	NR	rs2842198-A	0.3976	8E-9		0.07193137	[0.047-0.096] unit decrease	NR [NR]	N
920	chr1	43930737	43930738	rs2842198	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p34.2	HYI, SZT2	rs2842198-?		1E-8				NR [6786993] (imputed)	N
920	chr1	43941507	43941508	rs12069733	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	HYI-AS1	rs12069733-A	0.363	1E-8		0.011969789	[0.0079-0.0161] unit decrease	Affymetrix [up to 18485882] (imputed)	N
920	chr1	43941507	43941508	rs12069733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.2	Intergenic	rs12069733-A	0.3703	2E-14	(MTAG)	0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
920	chr1	43949717	43949718	rs2992038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p34.2		rs2992038-C	NR	5E-12		0.0105	[0.0076-0.0134] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
920	chr1	43949809	43949810	rs2992037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs2992037-A	0.3223	4E-23		0.0149	[0.012-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
920	chr1	43950264	43950265	rs2782653	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.2	NR	rs2782653-C	0.294235	6E-10		0.042695448	[0.029-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
920	chr1	43950264	43950265	rs2782653	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p34.2	Intergenic	rs2782653-C	0.2815	5E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
920	chr1	43950264	43950265	rs2782653	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	HYI-AS1	rs2782653-C	NR	3E-8		5.532	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr1	43970296	43970297	rs2842192	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs2842192-A	0.2826	9E-11		0.014577991	[0.01-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
920	chr1	43983679	43983680	rs35947542	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	1p34.2	NR	rs35947542-?		9E-9				NR [8028859]	N
920	chr1	43986444	43986445	rs72887223	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.2	NR	rs72887223-T	0.02613	7E-10	(TKT)	0.5683	NR unit increase	Illumina [1671387] (imputed)	N
920	chr1	43989772	43989773	rs11577403	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1p34.2	PTPRF	rs11577403-A	0.39	2E-7		0.89	[0.56-1.22] g/day increase	Affymetrix [10353649] (imputed)	N
920	chr1	43993895	43993896	rs112904272	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	1p34.2	Intergenic	rs112904272-?	NR	6E-6		1.12	[1.07-1.16]	Affymetrix, Illumina [39235000] (imputed)	N
920	chr1	44005279	44005280	rs2819332	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	1p34.2	PTPRF	rs2819332-A	0.23	5E-6	(Meta)			Illumina [254145]	N
920	chr1	44006338	44006339	rs2782639	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	1p34.2	PTPRF	rs2782639-G	NR	2E-8		1.0752687	[1.05-1.1]	NR [5009020] (imputed)	N
920	chr1	44007647	44007648	rs2842189	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p34.2	NR	rs2842189-C	0.633	2E-17		0.0136285	[0.01-0.017] unit increase	NR [9732723] (imputed)	N
920	chr1	44009032	44009033	rs2782640	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p34.2	NR	rs2782640-T	0.622178	4E-9		0.00496639	[0.0033-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
920	chr1	44009032	44009033	rs2782640	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p34.2	NR	rs2782640-T	0.622178	5E-6		0.00419747	[0.0023-0.0061] unit increase	Affymetrix [16582965] (imputed)	N
920	chr1	44010455	44010456	rs58859557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs58859557-T	0.0702	3E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
920	chr1	44010455	44010456	rs58859557	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	PTPRF	rs58859557-T	NR	4E-8		5.503	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr1	44010472	44010473	rs6691004	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	1p34.2	NR	rs6691004-?	0.02184	8E-6		0.243608	[0.14-0.35] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
920	chr1	44010570	44010571	rs6695915	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	1p34.2	PTPRF	rs6695915-A	0.86	4E-7		1.07	[1.04-1.10]	NR [~ 8000000] (imputed)	N
920	chr1	44011736	44011737	rs951740	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p34.2		rs951740-G	0.383	5E-30		0.014	[0.012-0.016] unit decrease	NR [NR] (imputed)	N
920	chr1	44011736	44011737	rs951740	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p34.2	NR	rs951740-A	0.625	1E-40		0.0148989	[0.013-0.017] unit increase	NR [9732723] (imputed)	N
920	chr1	44011736	44011737	rs951740	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p34.2	NR	rs951740-A	0.625	4E-29		0.029540867	[0.024-0.035] unit increase	NR [~ 10000000] (imputed)	N
920	chr1	44014279	44014280	rs2842188	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.2	NR	rs2842188-T	NR	9E-9		5.742	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
920	chr1	44014279	44014280	rs2842188	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p34.2	PTPRF	rs2842188-?	NR	5E-11		6.566	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
920	chr1	44015808	44015809	rs2819336	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p34.2		rs2819336-T	0.3489	1E-9		47.191517	z score increase	NR [6814003]	N
920	chr1	44015808	44015809	rs2819336	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p34.2	NR	rs2819336-T	0.43	2E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
920	chr1	44015808	44015809	rs2819336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.2	Intergenic	rs2819336-T	0.3611	2E-39	(MTAG)	0.0179	[0.015-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
920	chr1	44015808	44015809	rs2819336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.2	Intergenic	rs2819336-T	0.3641	3E-22	(MTAG)	0.0231	[0.018-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
920	chr1	44015808	44015809	rs2819336	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	PTPRF	rs2819336-T	NR	1E-12		7.077	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr1	44022302	44022303	rs2494995	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1p34.2	PTPRF	rs2494995-A	0.7822	4E-6		0.0082	[0.0047-0.0117] unit increase	Affymetrix [~ 7740000] (imputed)	N
920	chr1	44022533	44022534	rs2842176	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs2842176-T	0.217	2E-13		0.017818967	[0.013-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
920	chr1	44026039	44026040	rs11210869	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p34.2	NR	rs11210869-A	0.629532	1E-12		0.014156	[0.01-0.018] unit increase	NR [NR]	N
920	chr1	44026655	44026656	rs12076635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p34.2		rs12076635-?	NR	2E-19				NR [~ 8900000] (imputed)	N
920	chr1	44026655	44026656	rs12076635	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs12076635-C	0.7811	3E-34		0.0207	[0.017-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
920	chr1	44026655	44026656	rs12076635	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p34.2	NR	rs12076635-C	0.7871	3E-11		0.018023912	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
920	chr1	44028912	44028913	rs61769611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.2		rs61769611-?	NR	3E-16				NR [~ 8900000] (imputed)	N
920	chr1	44029352	44029353	rs11210871	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	1p34.2	NR	rs11210871-C	0.3	2E-9		0.59	[0.39-0.79] unit decrease	Affymetrix [39302896] (imputed)	N
920	chr1	44029352	44029353	rs11210871	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.2	NR	rs11210871-C	NR	3E-9		5.927	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
920	chr1	44029352	44029353	rs11210871	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.2	PTPRF	rs11210871-C	NR	4E-9		5.89	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr1	44029352	44029353	rs11210871	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	PTPRF	rs11210871-C	NR	4E-10		0.019687697	[0.014-0.026] unit decrease	Affymetrix [NR]	N
920	chr1	44037684	44037685	rs3001723	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p34.2	PTPRF	rs3001723-A		2E-16		1.032	[NR]	Affymetrix [up to 79000000] (imputed)	N
920	chr1	44037684	44037685	rs3001723	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p34.2	PTPRF, KDM4A	rs3001723-?		7E-14				NR [6786993] (imputed)	N
920	chr1	44037684	44037685	rs3001723	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p34.2	PTPRF	rs3001723-A	0.3	7E-10		0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
920	chr1	44037684	44037685	rs3001723	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1p34.2	PTPRF	rs3001723-A	0.21	7E-11		0.0159	[0.01-0.022] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
920	chr1	44037684	44037685	rs3001723	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	1p34.2	PTPRF	rs3001723-A	NR	1E-8		1.075	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
920	chr1	44037684	44037685	rs3001723	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p34.2	NR	rs3001723-A	NR	3E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
921	chr1	44040965	44040966	rs10789436	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p34.2	PTPRF	rs10789436-T	0.22	1E-10		0.015054529	[0.01-0.02] unit increase	Illumina [9339358] (imputed)	N
921	chr1	44050855	44050856	rs3828150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs3828150-T	0.214	7E-17	(conditional-joint)	0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
921	chr1	44051629	44051630	rs61769642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.2	NR	rs61769642-A	0.342361	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
921	chr1	44054993	44054994	rs58097944	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs58097944-A	0.4525	7E-11		0.013218733	[0.0092-0.0172] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44054993	44054994	rs58097944	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	PTPRF	rs58097944-A	NR	6E-9		0.017888075	[0.012-0.024] unit increase	Affymetrix [NR]	N
921	chr1	44061031	44061032	rs10890263	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p34.2	PTPRF	rs10890263-T	0.7369	5E-8		0.02	[0.013-0.027] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
921	chr1	44061031	44061032	rs10890263	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p34.2	PTPRF	rs10890263-T	0.7304	8E-6		0.01977	[0.011-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
921	chr1	44062153	44062154	rs673253	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p34.2	SZT2, PTPRF, KDM4A, ST3GAL3, SLC6A9, KLF17	rs673253-?		3E-13				Affymetrix, Illumina [NR] (imputed)	N
921	chr1	44062153	44062154	rs673253	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs673253-T	0.437	5E-12		0.014120502	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44062153	44062154	rs673253	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	PTPRF	rs673253-T	NR	3E-11		0.01960601	[0.014-0.025] unit increase	Affymetrix [NR]	N
921	chr1	44071220	44071221	rs631248	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p34.2	NR	rs631248-G	0.2187	1E-8				NR [9056863] (imputed)	N
921	chr1	44071852	44071853	rs512579	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs512579-C	0.1585	3E-9		0.0157451	[0.011-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44072419	44072420	rs539096	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p34.2	KDM4A	rs539096-A	0.219	5E-12		0.019712323	[0.014-0.025] unit increase	Affymetrix [11515109] (imputed)	N
921	chr1	44072419	44072420	rs539096	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.2	PTPRF	rs539096-A	NR	9E-9		0.020174427	[0.013-0.027] unit decrease	Affymetrix [NR]	N
921	chr1	44074453	44074454	rs190159566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p34.2	NR	rs190159566-C	0.993364	2E-16		0.230377	[0.18-0.29] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
921	chr1	44075504	44075505	rs519669	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p34.2		rs519669-G	0.26	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
921	chr1	44076018	44076019	rs11210887	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1p34.2	PTPRF	rs11210887-A	0.7	3E-12		0.0174	[0.013-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
921	chr1	44076018	44076019	rs11210887	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	1p34.2	PTPRF	rs11210887-G	NR	3E-11		1.0869565	[1.06-1.11]	NR [5009020] (imputed)	N
921	chr1	44076018	44076019	rs11210887	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	1p34.2	PTPRF	rs11210887-?	NR	1E-8		0.0261903	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
921	chr1	44076468	44076469	rs549845	33495439	Demontis D	2021-01-25	Nat Commun	Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder.	Disruptive behavior disorder and attention deficit hyperactivity disorder	3,802 European ancestry cases, 31,305 European ancestry controls, 406 Han Chinese ancestry cases, 917 Han Chinese ancestry controls	NA	1p34.2	PTPRF	rs549845-G	0.3	2E-7		1.147	[1.1-1.2]	Affymetrix, Illumina, Perlegen [8285688] (imputed)	N
921	chr1	44076468	44076469	rs549845	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs549845-A	0.2993	3E-11		0.014431226	[0.01-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44076468	44076469	rs549845	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p34.2		rs549845-G	0.301	8E-14		0.016	[0.012-0.02] unit increase	Affymetrix [up to 90000000] (imputed)	N
921	chr1	44078078	44078079	rs620064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p34.2	PTPRF	rs620064-T	0.00470899999999996	4E-21		0.16289738	[0.13-0.2] unit increase	Affymetrix [93095623] (imputed)	N
921	chr1	44078601	44078602	rs3791151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p34.2		rs3791151-A	NR	6E-13		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
921	chr1	44080008	44080009	rs55684236	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p34.2	NR	rs55684236-A	0.337	4E-22		0.0149703	[0.012-0.018] unit increase	NR [9732723] (imputed)	N
921	chr1	44081761	44081762	rs516921	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	PTPRF	rs516921-G	0.1945	1E-8		0.014516699	[0.0096-0.0195] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44083014	44083015	rs653953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p34.2		rs653953-?	NR	5E-14				NR [~ 8900000] (imputed)	N
921	chr1	44083109	44083110	rs571862	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p34.2		rs571862-C	0.239	6E-20		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
921	chr1	44087924	44087925	rs72673097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs72673097-A	0.0299	9E-10		0.0257	[0.017-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
921	chr1	44091273	44091274	rs2916568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p34.2		rs2916568-A	0.28	1E-11		6.75	z score increase	Affymetrix [9061022] (imputed)	N
921	chr1	44097529	44097530	rs2970610	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2970610-?	NR	1E-8				NR [2625067]	N
921	chr1	44097529	44097530	rs2970610	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		PTPRF	rs2970610-T	NR	4E-9	(EA)	1.0703	[1.05-1.09]	Illumina [6627481] (imputed)	N
921	chr1	44097529	44097530	rs2970610	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		PTPRF	rs2970610-T	NR	1E-10		1.066	[1.05-1.09]	Illumina [6627481] (imputed)	N
921	chr1	44097529	44097530	rs2970610	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		KDM4A, PTPRF	rs2970610-?	NR	1E-11		1.07	[1.05-1.09]	Illumina [8000000] (imputed)	N
921	chr1	44097529	44097530	rs2970610	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		KDM4A, MED8, PTPRF, ST3GAL3	rs2970610-T	NR	1E-12		1.072	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
921	chr1	44100083	44100084	rs11210892	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1p34.2	NR	rs11210892-A	0.6382	3E-8		0.06351961	[0.041-0.086] unit decrease	NR [NR]	N
921	chr1	44100083	44100084	rs11210892	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1p34.2	NR	rs11210892-?		2E-10				NR [8377093]	N
921	chr1	44100083	44100084	rs11210892	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	1p34.2	NR	rs11210892-?		5E-11				NR [8377093]	N
921	chr1	44100083	44100084	rs11210892	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p34.2	NR	rs11210892-?	NR	1E-15		1.0749799	[1.06-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
921	chr1	44100083	44100084	rs11210892	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1p34.2	NR	rs11210892-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
921	chr1	44100083	44100084	rs11210892	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p34.2	KDM4A	rs11210892-A	0.6733	4E-13		0.0155720515	[0.011-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
921	chr1	44100083	44100084	rs11210892	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p34.2	ARTN, ATP6V0B, B4GALT2, CCDC24, DPH2, IPO13, KDM4A, KDM4A-AS1, LOC101929592, MIR6079, PTPRF, SLC6A9, ST3GAL3	rs11210892-?		4E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
921	chr1	44100083	44100084	rs11210892	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1p34.2	KDM4A, PTPRF	rs11210892-A	0.323	3E-10		1.0706638	[1.05-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
921	chr1	44107427	44107428	rs2367724	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1p34.2	MED8	rs2367724-T	0.331244	3E-9		5.953	unit increase	NR [10847151] (imputed)	N
921	chr1	44109748	44109749	rs607296	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1p34.2	NR	rs607296-A	NR	2E-8		5.655	NR z score increase	NR [NR]	N
921	chr1	44111186	44111187	rs623965	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	2,443 European ancestry twins	NA	1p34.2	KDM4A	rs623965-G	0.76	5E-6		0.17	[0.092-0.248] unit increase	Illumina [4001140] (imputed)	N
921	chr1	44113108	44113108	rs147154109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p34.2	NR	rs147154109-I	0.347314	1E-16		0.017415	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
921	chr1	44117005	44117006	rs660899	22322875	Kim SJ	2012-02-09	Circ J	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NA	1p34.2	JMJD2A	rs660899-?	NR	4E-6	SNP+sleep	7.22	[3.12-16.70]	Affymetrix [334750]	N
921	chr1	44121556	44121557	rs2274465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.2	KDM4A	rs2274465-G	0.347354	6E-13		0.01680368	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
921	chr1	44121556	44121557	rs2274465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.2		rs2274465-?	NR	1E-18				NR [~ 8900000] (imputed)	N
921	chr1	44121556	44121557	rs2274465	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p34.2	KDM4A, PTPRP	rs2274465-C	0.66	2E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
921	chr1	44129098	44129099	rs656131	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.2	KDM4A	rs656131-C	0.3201	3E-9		0.012891854	[0.0086-0.0172] unit increase	Affymetrix [up to 18485882] (imputed)	N
921	chr1	44129208	44129209	rs6658300	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	1p34.2		rs6658300-C	0.705939925	2E-6		0.013309197	[0.0078-0.0188] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
921	chr1	44129778	44129779	rs669446	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	1p34.2	JMJD2A	rs669446-T	0.31	5E-6	(Meta)			Illumina [254145]	N
921	chr1	44133834	44133835	rs142684389	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	1p34.2		rs142684389-?	NR	3E-6		0.602075	[0.35-0.85] unit increase	Illumina [9906551] (imputed)	N
921	chr1	44134076	44134077	rs3791033	34728798	Sanchez-Roige S	2021-11-02	Mol Psychiatry	Genome-wide association study of problematic opioid prescription use in 132,113 23andMe research participants of European ancestry.	Problematic opioid prescription use	27,805 European ancestry cases, 104,308 European ancestry controls	NA	1p34.2		rs3791033-T	NR	4E-8		5.491	z score increase	Illumina [11311983] (imputed)	N
921	chr1	44134076	44134077	rs3791033	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs autism spectrum disorder (ordinary least squares (OLS))	19,099 ADHD cases, 18,381 autism spectrum disorder cases	NA	1p34.2		rs3791033-?	NR	4E-9		0.0151	NR unit decrease	NR [5798030] (imputed)	N
921	chr1	44134076	44134077	rs3791033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.2		rs3791033-T	0.6703	2E-17	(conditional-joint)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
921	chr1	44137256	44137257	rs586339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p34.2		rs586339-?	NR	2E-8				NR [~ 8900000] (imputed)	N
921	chr1	44137256	44137257	rs586339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.2	Intergenic	rs586339-A	0.7401	2E-31	(MTAG)	0.0174	[0.014-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
921	chr1	44140074	44140075	rs10789442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p34.2	Intergenic	rs10789442-A	0.6659	3E-21	(MTAG)	0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
921	chr1	44140074	44140075	rs10789442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p34.2	Intergenic	rs10789442-A	0.6659	6E-14		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
921	chr1	44141148	44141149	rs9787076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.2	Intergenic	rs9787076-A	0.6694	2E-34	(MTAG)	0.0214	[0.018-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
921	chr1	44141148	44141149	rs9787076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p34.2	Intergenic	rs9787076-A	0.6694	4E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
921	chr1	44148167	44148168	rs4660257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p34.2		rs4660257-?	NR	3E-19				NR [~ 8900000] (imputed)	N
921	chr1	44151910	44151911	rs113688544	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1p34.2	KDM4A	rs113688544-C	0.747240408	4E-6		1.1049403	[1.06-1.15]	Illumina [10439017] (imputed)	N
921	chr1	44165645	44165646	rs145155829	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1p34.2	NR	rs145155829-C		4E-6		0.2153	[0.12-0.31] SD units increase	NR [10700000] (imputed)	N
921	chr1	44171210	44171211	rs56319043	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p34.1	NR	rs56319043-T	0.244	4E-8		0.0140718	[0.0091-0.0191] unit decrease	NR [9732723] (imputed)	N
921	chr1	44171210	44171211	rs56319043	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	1p34.1	KDM4A-AS1	rs56319043-C	NR	4E-9		1.0869565	[1.05-1.11]	NR [5009020] (imputed)	N
922	chr1	44172457	44172458	rs34550543	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	1p34.1	ST3GAL3	rs34550543-T	0.4063	1E-10		1.02047	[NR]	Illumina [12493444] (imputed)	N
922	chr1	44173422	44173423	rs112984125	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p34.1	NR	rs112984125-A	0.29	4E-7		0.92	[0.88-0.96]	Illumina [8468885] (imputed)	N
922	chr1	44173422	44173423	rs112984125	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	1p34.1	ST3GAL3	rs112984125-A	NR	2E-7	(males)	0.097	[0.06-0.134] unit decrease	Illumina [7531543] (imputed)	N
922	chr1	44183922	44183923	rs112361411	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	1p34.1	NR	rs112361411-T	0.2913	2E-13		0.09819496	[0.072-0.124] unit decrease	NR [NR]	N
922	chr1	44184192	44184192	rs11420276	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	1p34.1	NR	rs11420276-?		2E-13				NR [8028859]	N
922	chr1	44186811	44186812	rs11810109	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p34.1	NR	rs11810109-?		5E-12		0.0162518	[0.012-0.021] unit increase	Affymetrix [19400418] (imputed)	N
922	chr1	44188464	44188465	rs12410155	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	1p34.1	NR	rs12410155-?		8E-14				NR [520857]	N
922	chr1	44188718	44188719	rs12410444	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p34.1		rs12410444-A	0.7183	3E-10		50.64692	z score increase	NR [6814003]	N
922	chr1	44188718	44188719	rs12410444	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	1p34.1		rs12410444-?	NR	2E-10		0.0145	NR unit increase	NR [5568121] (imputed)	N
922	chr1	44188718	44188719	rs12410444	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.1	ST3GAL3, RP11-184I16.4	rs12410444-G	0.2927	9E-12		0.015134618	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
922	chr1	44188718	44188719	rs12410444	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p34.1	RP11-184I16.4	rs12410444-?	NR	7E-12		0.01519143	[0.011-0.02] unit decrease	NR [7306098]	N
922	chr1	44188718	44188719	rs12410444	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p34.1	NR	rs12410444-A	0.7	6E-13		0.017455857	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
922	chr1	44198530	44198531	rs6429637	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.1	ST3GAL3	rs6429637-A	NR	2E-9		0.018848784	[0.013-0.025] unit decrease	Affymetrix [NR]	N
922	chr1	44200990	44200991	rs72678661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.1	NR	rs72678661-T	0.01045	9E-9	(CTH)	0.9579	NR unit increase	Illumina [1671387] (imputed)	N
922	chr1	44215827	44215828	rs2367725	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	1p34.1	ST3GAL3	rs2367725-T	0.42	9E-6		1.08	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
922	chr1	44222569	44222570	rs11587515	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.1	NR	rs11587515-C	0.299205	4E-8		0.037541233	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
922	chr1	44223720	44223721	rs12124079	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	1p34.1	ST3GAL3	rs12124079-?	NR	7E-6		1.12	[1.05-1.18]	Affymetrix, Illumina [39235000] (imputed)	N
922	chr1	44229596	44229597	rs4660261	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.1	ST3GAL3	rs4660261-A	NR	5E-8		0.017837925	[0.011-0.024] unit increase	Affymetrix [NR]	N
922	chr1	44230884	44230885	rs3791045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p34.1		rs3791045-A	NR	2E-24		0.0206	[0.017-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
922	chr1	44233661	44233662	rs6656457	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.1	NR	rs6656457-C	NR	3E-8		5.517	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
922	chr1	44240532	44240533	rs11210918	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p34.1	LOC101929592	rs11210918-T	0.57699	1E-26		0.00238426	[0.0019-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
922	chr1	44243282	44243283	rs12119149	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.1	ST3GAL3	rs12119149-T	0.2668	3E-13		0.01655975	[0.012-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
922	chr1	44243282	44243283	rs12119149	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	1p34.1	ST3GAL3	rs12119149-T	NR	5E-10		0.012652	[0.0087-0.0166] unit increase	Affymetrix [18485882] (imputed)	N
922	chr1	44244339	44244340	rs12750525	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p34.1	ST3GAL3	rs12750525-G	0.58	3E-13		7.3	z-score increase	Affymetrix [4311822] (imputed)	N
922	chr1	44250300	44250301	rs4660749	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.1	NR	rs4660749-T	NR	9E-11		6.488	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
922	chr1	44254279	44254280	rs11577684	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	ST3GAL3	rs11577684-C	NR	8E-9		5.774	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
922	chr1	44271655	44271656	rs812490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p34.1	ST3GAL3	rs812490-C	0.449953	7E-10		0.0138140395	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr1	44274698	44274699	rs246776	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	ST3GAL3	rs246776-T	NR	3E-8		5.558	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
923	chr1	44314040	44314041	rs12040333	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	1p34.1	ST3GAL3	rs12040333-?	NR	1E-6		0.179	[0.1-0.25] unit decrease	Illumina [at least 13000000] (imputed)	N
923	chr1	44319372	44319373	rs3011225	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	1p34.1	ST3GAL3	rs3011225-G	0.22	7E-8	(Joint)			Illumina [254145]	N
923	chr1	44323243	44323244	rs3952787	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	1p34.1	NR	rs3952787-?		3E-8				NR [520857]	N
923	chr1	44338574	44338575	rs2906457	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p34.1	ST3GAL3	rs2906457-A	0.2654	3E-10		0.0649	[0.045-0.085] unit decrease	NR [9744772] (imputed)	N
923	chr1	44341894	44341895	rs2906455	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	ST3GAL3	rs2906455-T	NR	8E-10		6.153	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
923	chr1	44345840	44345841	rs2485997	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	1p34.1		rs2485997-C	0.74974273	2E-6		0.013451519	[0.0079-0.019] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
923	chr1	44347086	44347087	rs77201694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.1		rs77201694-A	0.1213	1E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
923	chr1	44349404	44349405	rs803679	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p34.1	ST3GAL3	rs803679-G	0.205527	7E-12		0.0175012	[0.013-0.022] unit decrease	NR [16516521] (imputed)	N
923	chr1	44369008	44369009	rs783301	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.1	ST3GAL3	rs783301-T	0.09344	1E-10		0.021926954	[0.015-0.029] unit decrease	Affymetrix [up to 18485882] (imputed)	N
923	chr1	44369443	44369444	rs11210935	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p34.1	ST3GAL3	rs11210935-A	0.2034	3E-11		0.016159166	[0.011-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
923	chr1	44371436	44371437	rs147671612	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p34.1		rs147671612-?	NR	9E-10				NR [7857346] (imputed)	N
923	chr1	44371440	44371441	rs142328051	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p34.1	NR	rs142328051-T	0.9082	4E-8		0.021635115	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
923	chr1	44373408	44373409	rs2486012	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.1	ST3GAL3	rs2486012-A	NR	1E-13		0.037491687	[0.028-0.047] unit increase	Affymetrix [NR]	N
923	chr1	44377502	44377503	rs4314918	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	1p34.1	NR	rs4314918-G	0.17	4E-8		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
923	chr1	44377502	44377503	rs4314918	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p34.1	NR	rs4314918-G	0.199801	4E-10		0.04920983	[0.034-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
923	chr1	44377502	44377503	rs4314918	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p34.1	Intergenic	rs4314918-A	0.8281	8E-15	(MTAG)	0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
923	chr1	44379956	44379957	rs6674176	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p34.1	ST3GAL3	rs6674176-A	NR	1E-11		0.025321938	[0.018-0.033] unit increase	Affymetrix [NR]	N
923	chr1	44379956	44379957	rs6674176	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p34.1	ST3GAL3	rs6674176-?	NR	2E-9		6.039	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
923	chr1	44379956	44379957	rs6674176	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p34.1	ST3GAL3	rs6674176-?	NR	8E-6		4.457	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
923	chr1	44402564	44402565	rs12127737	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1p34.1	ARTN	rs12127737-G	0.2236	9E-7		0.009	[0.0055-0.0125] unit increase	Affymetrix [~ 7740000] (imputed)	N
923	chr1	44405562	44405563	rs11210937	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p34.1	Intergenic	rs11210937-T	0.1685	2E-10		0.0242	[0.017-0.032] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
923	chr1	44405562	44405563	rs11210937	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p34.1	NR	rs11210937-T	NR	3E-8		5.551	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
924	chr1	44440145	44440146	rs4660761	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	1p34.1	NR	rs4660761-?	NR	5E-9		1.098901		Affymetrix, Illumina [9938587] (imputed)	N
924	chr1	44440768	44440769	rs2286241	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.1	B4GALT2	rs2286241-C	0.056	3E-38	(Beta-1,4-galactosyltransferase 2, B4GALT2.9595.11.3)	0.67	[0.57-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
924	chr1	44447412	44447413	rs1859728	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.1	B4GALT2	rs1859728-G	0.96640625	7E-9	(B4GALT2, 9595_11_3)	0.39611438	[0.26-0.53] unit increase	Illumina [> 1000000] (imputed)	N
924	chr1	44448109	44448110	rs869896	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT2	5,366 Icelandic ancestry individuals	NA	1p34.1		rs869896-T	0.03103	1E-17		0.455507	[0.35-0.56] unit decrease	Illumina [7506463] (imputed)	N
924	chr1	44455202	44455203	rs2993619	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	NR	rs2993619-?	NR	7E-8		5.387	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
924	chr1	44465418	44465419	rs803619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p34.1		rs803619-C	NR	1E-8		0.02	[0.013-0.027] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
924	chr1	44465418	44465419	rs803619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.1		rs803619-T	0.1076	2E-14		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
924	chr1	44465418	44465419	rs803619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.1	Intergenic	rs803619-T	0.1076	1E-14	(MTAG)	0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
924	chr1	44469030	44469031	rs1362153	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	1p34.1	NR	rs1362153-C	0.1	7E-6		1.47	[1.29-1.65]	Illumina [4058415] (imputed)	N
924	chr1	44472165	44472168	rs141009186	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	1p34.1	NR	rs141009186-?	NR	8E-6		0.5421	[0.32-0.77] unit decrease	Illumina [at least 560000] (imputed)	N
924	chr1	44475122	44475123	rs113551349	33495439	Demontis D	2021-01-25	Nat Commun	Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	13,583 European ancestry cases, 22,314 European ancestry controls	NA	1p34.1	PTPRF	rs113551349-?	NR	4E-10		0.89	NR	Illumina [NR]	N
924	chr1	44475122	44475123	rs113551349	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	1p34.1	SLC6A9	rs113551349-C	NR	5E-10		1.098901	[1.08-1.14]	NR [5009020] (imputed)	N
924	chr1	44488465	44488466	rs34282584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1p34.1		rs34282584-C	0.230689	9E-10		0.0266236	[0.018-0.035] unit decrease	Illumina [13476266] (imputed)	N
924	chr1	44488465	44488466	rs34282584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1p34.1		rs34282584-C	0.230721	3E-8		0.0244088	[0.016-0.033] unit decrease	Illumina [13476299] (imputed)	N
924	chr1	44488465	44488466	rs34282584	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1p34.1	SLC6A9	rs34282584-?	NR	2E-8		0.03052	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
924	chr1	44497248	44497249	rs12037805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.1		rs12037805-C	NR	8E-14		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
924	chr1	44497248	44497249	rs12037805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p34.1		rs12037805-C	NR	9E-15		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.1	SLC6A9, RP5-1198O20.4	rs12037805-C	0.319057	3E-20		0.0221383	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p34.1	SLC6A9, RP5-1198O20.4	rs12037805-C	0.319065	6E-19		0.021253385	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs12037805-C	0.295303	1E-25				Affymetrix, Illumina [24246363] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p34.1	NR	rs12037805-C	0.320533	2E-24		0.020149	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs12037805-C	0.293149	3E-24				Affymetrix, Illumina [20825802] (imputed)	N
924	chr1	44497248	44497249	rs12037805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p34.1	NR	rs12037805-C	0.320163	1E-22		0.020411	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
924	chr1	44497248	44497249	rs12037805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.1		rs12037805-?	NR	1E-16				NR [~ 8900000] (imputed)	N
924	chr1	44508194	44508195	rs1476670	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1p34.1	NR	rs1476670-C	NR	4E-6		0.1007	[0.058-0.143] SD units increase	NR [10700000] (imputed)	N
924	chr1	44510856	44510857	rs181628720	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1p34.1		rs181628720-C	0.0090155	3E-6		0.16432	[0.095-0.234] unit decrease	Affymetrix [15580782] (imputed)	N
924	chr1	44510856	44510857	rs181628720	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1p34.1		rs181628720-C	0.0090155	6E-6		0.16273	[0.092-0.233] unit decrease	Affymetrix [15580782] (imputed)	N
924	chr1	44551255	44551256	rs6675774	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1p34.1	NR	rs6675774-A	0.1267	4E-6		0.2395	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
924	chr1	44558671	44558672	rs114940806	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	1p34.1	KLF17	rs114940806-?		1E-6	(Additive)	3.0	[1.90-4.70]	Illumina [5600610] (imputed)	N
925	chr1	44598759	44598760	rs2254746	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Milk allergy (maternal genetic effects)	275 European ancestry complete and incomplete trios	NA	1p34.1	KLF17	rs2254746-?	NR	2E-6				Illumina [NR]	N
925	chr1	44602158	44602159	rs6662888	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.1	DMAP1	rs6662888-?	NR	3E-6	(alpha hydroxybutyric acid)	0.18677334	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
925	chr1	44602421	44602422	rs11581177	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p34.1		rs11581177-A	0.2	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
925	chr1	44623774	44623775	rs803379	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p34.1	Intergenic	rs803379-T	0.3777	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
925	chr1	44624259	44624260	rs6664662	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs6664662-?	NR	4E-9				NR [NR]	N
925	chr1	44624259	44624260	rs6664662	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs6664662-?	NR	3E-9				NR [NR]	N
925	chr1	44630317	44630318	rs6700522	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.1	DMAP1	rs6700522-?	NR	7E-6	(aconitate)	0.18929845	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
925	chr1	44631337	44631338	rs28713190	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs28713190-?	NR	3E-9				NR [NR]	N
925	chr1	44631337	44631338	rs28713190	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs28713190-?	NR	8E-9				NR [NR]	N
925	chr1	44631337	44631338	rs28713190	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs28713190-?	NR	3E-9				NR [NR]	N
925	chr1	44631337	44631338	rs28713190	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p34.1		rs28713190-?	NR	2E-8				NR [NR]	N
926	chr1	44701276	44701277	rs7525929	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p34.1	NR	rs7525929-?	NR	3E-6		0.0080685	[0.0047-0.0115] unit increase	Affymetrix [805426] (imputed)	N
926	chr1	44705387	44705388	rs1778904	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.1		rs1778904-C	0.3808	2E-12	(conditional-joint)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
926	chr1	44707294	44707295	rs1738050	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.1		rs1738050-C	0.6197	1E-10		0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
926	chr1	44707294	44707295	rs1738050	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.1	Intergenic	rs1738050-C	0.6197	4E-12	(MTAG)	0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
926	chr1	44751709	44751710	rs325163	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	1p34.1	ERI3	rs325163-T	0.2853	9E-8		0.0134253865	[0.0078-0.0191] unit decrease	NR [9417325] (imputed)	N
926	chr1	44761710	44761711	rs72891772	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	1p34.1	ERI3	rs72891772-?	NR	7E-6		0.124	[0.051-0.197] unit decrease	Illumina [at least 13000000] (imputed)	N
926	chr1	44826510	44826511	rs12078192	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p34.1	NR	rs12078192-?	NR	3E-6		0.0080964	[0.0047-0.0115] unit increase	Affymetrix [805426] (imputed)	N
927	chr1	44830166	44830167	rs55989849	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	1p34.1	NR	rs55989849-?	NR	1E-5				NR [18617478] (imputed)	N
928	chr1	44958214	44958215	rs10082259	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	1p34.1		rs10082259-C	0.832	6E-7		1.9		Illumina [5411261] (imputed)	N
928	chr1	44974081	44974082	rs781771	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	1p34.1	RNF220	rs781771-C	0.29	1E-6		0.14	unit decrease	Affymetrix [5396780] (imputed)	N
928	chr1	45005995	45005996	rs272570	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p34.1	RNF220	rs272570-G	0.809814	5E-9		0.0431758	[0.029-0.058] unit increase	Affymetrix [509255] (imputed)	N
928	chr1	45012272	45012273	rs272564	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	1p34.1	RNF220	rs272564-A	0.716601	1E-7		0.376813	[0.24-0.52] unit decrease	Affymetrix [~ 7800000] (imputed)	N
928	chr1	45012272	45012273	rs272564	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	1p34.1	RNF220	rs272564-A	0.716	9E-10		0.37	[0.25-0.49] bpm increase	Affymetrix [~ 7800000] (imputed)	N
928	chr1	45012272	45012273	rs272564	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	1p34.1	RNF220	rs272564-A	0.718759	5E-9	(males)	0.547538	[0.36-0.73] bpm increase	Affymetrix [~ 7800000] (imputed)	N
928	chr1	45012272	45012273	rs272564	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	1p34.1	RNF220	rs272564-A	0.716	7E-12		0.462	[0.33-0.6] bpm increase	Affymetrix [~ 7800000] (imputed)	N
928	chr1	45012272	45012273	rs272564	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p34.1	RNF220	rs272564-A	0.713374	1E-12		0.0458252	[0.033-0.059] unit increase	Affymetrix [509255] (imputed)	N
928	chr1	45012272	45012273	rs272564	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p34.1	RNF220	rs272564-A	0.713435	8E-12		0.0443437	[0.032-0.057] unit increase	Affymetrix [509255] (imputed)	N
928	chr1	45012272	45012273	rs272564	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p34.1	RNF220	rs272564-A	0.713445	3E-11		0.0431872	[0.031-0.056] unit increase	Affymetrix [509255] (imputed)	N
928	chr1	45012272	45012273	rs272564	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	1p34.1	RNF220	rs272564-A	0.71349	6E-12		0.0442609	[0.032-0.057] unit increase	Affymetrix [509255] (imputed)	N
928	chr1	45012272	45012273	rs272564	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1p34.1	RNF220	rs272564-C	0.28	5E-21		0.351	[0.28-0.42] unit increase	Affymetrix [19941912] (imputed)	N
928	chr1	45067767	45067768	rs10890311	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p34.1	RNF220	rs10890311-T	0.21	6E-7	(conditional on rs4660861)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
929	chr1	45185260	45185261	rs12746898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p34.1	NR	rs12746898-A	0.809185	3E-12		0.016828	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
929	chr1	45187329	45187330	rs11800505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs11800505-G	0.818155	5E-11				Affymetrix, Illumina [22063850] (imputed)	N
930	chr1	45285614	45285615	rs188241457	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p34.1	NR	rs188241457-?	NR	7E-6		4250.1504	NR unit decrease	Illumina [2379855]	N
930	chr1	45293517	45293518	rs7525308	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	1p34.1	PTCH2	rs7525308-G	0.49	2E-12		7.03	NR z score increase	Illumina [at least 900015] (imputed)	N
931	chr1	45369105	45369106	rs552633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.1	EIF2B3	rs552633-G	0.550959	1E-12		0.015824879	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
931	chr1	45438876	45438877	rs263998	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	1p34.1	NR	rs263998-C	0.43	1E-5	(EA)			Affymetrix, Illumina [NR] (imputed)	N
932	chr1	45502216	45502217	rs184502689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p34.1	ZSWIM5	rs184502689-T	NR	4E-8		0.0588739	[0.038-0.08] unit increase	Affymetrix [323123] (imputed)	N
933	chr1	45659131	45659132	rs143327921	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	1p34.1	NR	rs143327921-?	NR	4E-6		0.2441	[0.14-0.35] unit increase	Illumina [~ 7800000] (imputed)	N
933	chr1	45737437	45737438	rs3128438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.1		rs3128438-?	NR	6E-10				NR [~ 8900000] (imputed)	N
934	chr1	45767108	45767109	rs6699542	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	1p34.1	NR	rs6699542-A	0.242	9E-7	(Jaccard metric)	4.770628	NR z-score increase	Illumina [5293637] (imputed)	N
934	chr1	45796353	45796354	rs3219492	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1p34.1	MUTYH	rs3219492-T	0.1079	4E-6		0.0469	[0.027-0.067] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
934	chr1	45797504	45797505	rs3219489	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	NR	rs3219489-?	NR	3E-6		4.704	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
934	chr1	45797504	45797505	rs3219489	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	1p34.1	MUTYH	rs3219489-G	0.2139	1E-8		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
934	chr1	45803412	45803413	rs3219474	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p34.1	NR	rs3219474-?	NR	9E-6	(AA)	8.16	[6.73-9.59]	Illumina [905956]	N
934	chr1	45810864	45810865	rs17853159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p34.1	TESK2	rs17853159-A	0.080966	3E-18		0.03594818	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr1	45810864	45810865	rs17853159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p34.1	TESK2	rs17853159-A	0.080794	5E-41		0.055617664	[0.047-0.064] unit increase	Affymetrix [93095623] (imputed)	N
934	chr1	45810864	45810865	rs17853159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p34.1	TESK2	rs17853159-A	0.080749	1E-33		0.049678728	[0.042-0.058] unit increase	Affymetrix [93095623] (imputed)	N
934	chr1	45810864	45810865	rs17853159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p34.1	TESK2	rs17853159-A	0.080749	2E-15		0.03337217	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
934	chr1	45810864	45810865	rs17853159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs17853159-G	0.921879	4E-37				Affymetrix, Illumina [17210439] (imputed)	N
934	chr1	45810864	45810865	rs17853159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p34.1	NR	rs17853159-G	0.919273	1E-38		0.045466	[0.039-0.052] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
934	chr1	45810864	45810865	rs17853159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p34.1	TESK2	rs17853159-A	0.081	6E-15		0.05152379	[0.039-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45810864	45810865	rs17853159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p34.1	TESK2	rs17853159-A	0.0807	1E-14		0.05016531	[0.037-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45810864	45810865	rs17853159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p34.1	TESK2	rs17853159-A	0.0807	7E-10		0.04052447	[0.028-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45833328	45833328	rs549920468	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p34.1	TESK2	rs549920468-AT	0.2446	1E-11		0.02871486	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45838036	45838037	rs144785229	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	1p34.1	TSEK2	rs144785229-?	0.061337	6E-6		3.038123	[1.876171-4.919696]	Affymetrix, Illumina [NR] (imputed)	N
934	chr1	45847561	45847562	rs1538970	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p34.1	TESK2	rs1538970-A	0.2329	4E-19		0.03941025	[0.031-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45862477	45862478	rs551907009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p34.1	TESK2	rs551907009-G	0.3232	2E-15		0.03171634	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr1	45867943	45867944	rs61791368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.1		rs61791368-?	NR	4E-8				NR [~ 8900000] (imputed)	N
934	chr1	45870278	45870279	rs61791369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p34.1	TESK2	rs61791369-A	0.248633	2E-21		0.024934255	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
935	chr1	45879087	45879088	rs6657284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p34.1	TESK2	rs6657284-C	0.24854	3E-16		0.021291124	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
935	chr1	45902047	45902048	rs12410493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p34.1		rs12410493-G	0.753	3E-30				Affymetrix [10369434] (imputed)	N
935	chr1	45916060	45916061	rs55642258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p34.1	NR	rs55642258-A	0.235169	1E-67		0.037405	[0.033-0.042] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
935	chr1	45916225	45916225	rs144019485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p34.1	TESK2	rs144019485-TA	0.236251	1E-37		0.03392854	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr1	45916225	45916225	rs144019485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p34.1	TESK2	rs144019485-TA	0.236232	1E-23		0.026329357	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
935	chr1	45916225	45916225	rs144019485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p34.1	TESK2	rs144019485-TA	0.236239	1E-51		0.039916355	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr1	45922977	45922979	rs72387598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p34.1	TESK2	rs72387598-C	0.2357	3E-12		0.02940687	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr1	45924229	45924230	rs12564806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p34.1	TESK2	rs12564806-T	0.235915	3E-12		0.018504	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
935	chr1	45926494	45926495	rs2055145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p34.1	Intergenic	rs2055145-C	0.7707	9E-9	(MTAG)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
935	chr1	45946635	45946636	rs4660861	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p34.1	TESK2	rs4660861-G	0.57	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
935	chr1	45957608	45957609	rs11211123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p34.1		rs11211123-A	0.2228	8E-10		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
935	chr1	45966297	45966298	rs12042903	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p34.1	NR	rs12042903-?	NR	7E-7		4.953	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
935	chr1	45977802	45977803	rs67683090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p34.1		rs67683090-G	NR	2E-49		0.0326	[0.028-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
935	chr1	45977802	45977803	rs67683090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs67683090-G	0.240046	4E-73				Affymetrix, Illumina [24588908] (imputed)	N
935	chr1	45978674	45978675	rs4660306	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	1p34.1	MMACHC	rs4660306-T	0.33	2E-9		0.0435	[0.03-0.057] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
935	chr1	45984852	45984855	rs34857974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p34.1	PRDX1	rs34857974-A	0.230194	1E-9		0.015978688	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
935	chr1	46001577	46001578	rs114997373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p34.1		rs114997373-?	NR	2E-11				NR [~ 8900000] (imputed)	N
936	chr1	46012747	46012748	rs2991971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p34.1	AKR1A1	rs2991971-G	0.4229	4E-12		0.02543932	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
936	chr1	46013732	46013733	rs2993262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p34.1	AKR1A1	rs2993262-C	0.428765	1E-19		0.02099562	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr1	46013959	46013959	rs144366570	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.1	NR	rs144366570-ATT	0.1936	2E-7	(EA)	0.0423	[0.026-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
936	chr1	46020631	46020632	rs2991973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p34.1		rs2991973-?	NR	1E-18				NR [~ 8900000] (imputed)	N
936	chr1	46020794	46020795	rs666720	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p34.1	AKR1A1	rs666720-T	0.5439	2E-9		0.1165	[0.079-0.154] mmHg decrease	Affymetrix [NR] (imputed)	N
936	chr1	46021629	46021630	rs2993263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p34.1	AKR1A1	rs2993263-T	0.391412	6E-17		0.019052291	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr1	46027354	46027355	rs512083	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p34.1	AKR1A1	rs512083-T	0.5329	7E-14		0.1293	[0.095-0.163] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
936	chr1	46032310	46032311	rs2229540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.1	NR	rs2229540-G	0.05052	1E-8	(AKR1A1)	0.7884	NR unit decrease	Illumina [1671387] (imputed)	N
936	chr1	46037393	46037394	rs659437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p34.1		rs659437-T	0.161181	1E-8		0.0273892	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
936	chr1	46037393	46037394	rs659437	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p34.1	AKR1A1	rs659437-T	0.2184	4E-14		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
936	chr1	46039076	46039077	rs499600	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p34.1	AKR1A1	rs499600-T	0.1518	3E-19		0.0037	[0.0027-0.0047] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
936	chr1	46041099	46041100	rs1084086	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p34.1	intergenic	rs1084086-T	0.2967	1E-12		0.0146	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
936	chr1	46051052	46051053	rs72688441	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p34.1	AKR1A1	rs72688441-G	0.92921875	9E-175	(AKR1A1, 4192_10_2)	1.2670088	[1.18-1.35] unit increase	Illumina [> 1000000] (imputed)	N
936	chr1	46051052	46051053	rs72688441	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p34.1	AKR1A1	rs72688441-A	0.059	1E-126	(Alcohol dehydrogenase [NADP(+)], AKR1A1.4192.10.2)	1.18	[1.08-1.28] unit decrease	Affymetrix [10572788] (imputed)	N
936	chr1	46073488	46073489	rs2230657	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p34.1	NASP	rs2230657-G		6E-24		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
936	chr1	46073488	46073489	rs2230657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1p34.1	NASP	rs2230657-A	0.4677	3E-13		0.02592878	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
936	chr1	46081939	46081940	rs2356581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	1p34.1		rs2356581-A	NR	2E-8		0.2333	[0.15-0.31] unit increase	Affymetrix, Illumina [25840105] (imputed)	N
936	chr1	46084083	46084084	rs376271232	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p34.1	NR	rs376271232-C	0.0122	2E-9	(CPQ)	0.03165	NR unit increase	Illumina [1671387] (imputed)	N
936	chr1	46084382	46084383	rs1053941	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p34.1	NASP	rs1053941-T	0.23	5E-11	(erythritol)	0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
936	chr1	46085851	46085852	rs2275085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.1		rs2275085-?	NR	8E-25				NR [~ 8900000] (imputed)	N
936	chr1	46085878	46085879	rs2275086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p34.1		rs2275086-G	NR	7E-26		0.0146	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
936	chr1	46086076	46086077	rs3014246	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	1p34.1	CCDC17	rs3014246-C	29.64	1E-9	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
936	chr1	46086076	46086077	rs3014246	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p34.1	CCDC17	rs3014246-C	0.295598	5E-8		0.0117175	[0.0075-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
936	chr1	46086328	46086329	rs11590549	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p34.1	NR	rs11590549-T	0.24	4E-8		0.0117	[0.0074-0.016] unit increase	NR [NR]	N
936	chr1	46087576	46087577	rs3014242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p34.1	NR	rs3014242-G	0.371719	1E-13		0.0288	[0.021-0.036] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
936	chr1	46089224	46089225	rs3014240	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p34.1	CCDC17	rs3014240-?	NR	2E-13		0.02263038	[0.017-0.029] unit decrease	Illumina [27896057] (imputed)	N
936	chr1	46090843	46090844	rs56071727	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	1p34.1	CCDC17, GPBP1L1	rs56071727-G	NR	8E-7		0.114	[0.069-0.159] unit increase	Illumina [27700000] (imputed)	N
936	chr1	46094958	46094959	rs12037459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p34.1		rs12037459-G	0.305838	1E-13		0.0161807	[0.012-0.02] unit increase	Illumina [13479295] (imputed)	N
936	chr1	46111439	46111440	rs72688461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p34.1		rs72688461-T	NR	6E-17		0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
936	chr1	46126178	46126179	rs12402259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.1	TMEM69	rs12402259-?	NR	5E-6	(PC 34:2)	0.42000434	[0.24-0.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
937	chr1	46146811	46146812	rs6662572	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p34.1	MAST2, TESK2, PRDX1, MMACHC, GPBP1L1, TMEM69, CCDC163P, AL355480.1, AL355480.3, NASP, AL355480.4, CCDC17, RPS15AP10, RP11-767N6.2, IPP, RP11-767N6.7, RP11-630I5.1	rs6662572-G	0.2642276	6E-11	(EA, Alcohol dehydrogenase [NADP(+)])	0.3259	[0.23-0.42] unit decrease	Affymetrix [509946]	N
937	chr1	46149423	46149427	rs548522904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p34.1	NR	rs548522904-C	NR	1E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr1	46154550	46154551	rs115309188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p34.1		rs115309188-A	NR	3E-9		0.0345	[0.023-0.046] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
937	chr1	46154592	46154593	rs10683143	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.1	NR	rs10683143-A	0.4739	2E-6	(EA)	0.0319	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
937	chr1	46156307	46156308	rs6686944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs6686944-T	0.314547	1E-17				Affymetrix, Illumina [24246363] (imputed)	N
937	chr1	46182893	46182895	rs569967909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p34.1		rs569967909-G	NR	6E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
937	chr1	46185725	46185726	rs115092994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p34.1	NR	rs115092994-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
937	chr1	46185725	46185726	rs115092994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p34.1		rs115092994-?	NR	5E-13				NR [~ 8900000] (imputed)	N
937	chr1	46192396	46192396	rs143417884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p34.1		rs143417884-CT	NR	2E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
937	chr1	46195374	46195375	rs28375469	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p34.1	IPP	rs28375469-C		2E-20		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
937	chr1	46201426	46201427	rs183315407	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p34.1	IPP	rs183315407-G	0.959739	4E-14		0.0263723	[0.02-0.033] unit increase	Affymetrix [12370749]	N
937	chr1	46211346	46211347	rs61784824	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	1p34.1	NR	rs61784824-A	0.71	2E-8	(EA)	0.085	[0.056-0.114] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
937	chr1	46211346	46211347	rs61784824	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1p34.1	IPP	rs61784824-?	NR	2E-10		0.02894	[0.02-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
937	chr1	46223085	46223086	rs11211176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p34.1		rs11211176-A	NR	2E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
937	chr1	46228390	46228391	rs12025621	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p34.1	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs12025621-?		2E-13				NR [7428630] (imputed)	N
937	chr1	46229072	46229073	rs61784830	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	1p34.1	IPP, MAST2	rs61784830-G	NR	2E-7		0.12	[0.075-0.165] unit increase	Illumina [27700000] (imputed)	N
937	chr1	46244900	46244900	rs562138031	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1p34.1	MAST2	rs562138031-C	0.726	4E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
937	chr1	46245644	46245645	rs6694302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1p34.1		rs6694302-T	0.37322	3E-12		0.0227407	[0.016-0.029] unit increase	Illumina [13479135] (imputed)	N
937	chr1	46246119	46246120	rs72690839	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p34.1	IPP, MAST2	rs72690839-G	0.971024	1E-17	(erythritol)	0.541	[0.42-0.66] unit increase	Illumina [13039987] (imputed)	N
937	chr1	46248142	46248143	rs10749857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p34.1		rs10749857-T	0.27	4E-14		7.55	z score increase	Affymetrix [9061022] (imputed)	N
937	chr1	46248142	46248143	rs10749857	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p34.1	NR	rs10749857-T	0.2996	6E-17				NR [9056863] (imputed)	N
937	chr1	46249386	46249387	rs11211184	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p34.1		rs11211184-A	0.27	2E-34		12.26	z score increase	Affymetrix [9061022] (imputed)	N
937	chr1	46251654	46251655	rs544780844	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1p34.1	NR	rs544780844-T	NR	2E-10		1.065	[1.04-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
937	chr1	46252143	46252144	rs7540578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1p34.1		rs7540578-T	0.373313	8E-16		0.0278151	[0.021-0.035] unit decrease	Illumina [13478928] (imputed)	N
937	chr1	46256326	46256327	rs61783169	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1p34.1	NR	rs61783169-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
938	chr1	46276838	46276839	rs375439362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p34.1		rs375439362-C	NR	6E-15		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
938	chr1	46284245	46284246	rs6700597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p34.1	MAST2	rs6700597-A	0.434914	4E-28		0.02463513	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr1	46285460	46285461	rs6695809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p34.1		rs6695809-C	NR	4E-49		0.0256	[0.022-0.029] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
938	chr1	46287868	46287869	rs11211199	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.1		rs11211199-T	0.5618	1E-12		0.10843161	[0.077-0.14] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
938	chr1	46290631	46290632	rs6661910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p34.1		rs6661910-T	NR	3E-30		0.0187	[0.016-0.022] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
938	chr1	46324164	46324165	rs61783217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs61783217-G	0.476458	4E-23				Affymetrix, Illumina [24649327] (imputed)	N
938	chr1	46325873	46325875	rs796415138	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p34.1	MAST2	rs796415138-T	0.4555	7E-10		0.02275749	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr1	46325873	46325875	rs796415138	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p34.1	MAST2	rs796415138-T	0.4555	1E-9		0.022371	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr1	46325873	46325875	rs796415138	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p34.1	MAST2	rs796415138-T	0.4555	5E-11		0.02435228	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr1	46325873	46325875	rs796415138	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p34.1	MAST2	rs796415138-T	0.4555	3E-10		0.0231894	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr1	46336202	46336204	rs35057731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p34.1		rs35057731-T	NR	2E-15		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
938	chr1	46354862	46354863	rs6662548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p34.1		rs6662548-A	NR	1E-13		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
938	chr1	46355078	46355079	rs7515491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	1p34.1		rs7515491-G	0.687377	1E-9		0.0200374	[0.014-0.027] unit decrease	Illumina [13478948] (imputed)	N
938	chr1	46355078	46355079	rs7515491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p34.1		rs7515491-G	NR	2E-36		0.0214	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
938	chr1	46355078	46355079	rs7515491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	1p34.1		rs7515491-G	0.686839	3E-12		0.0234315	[0.017-0.03] unit decrease	Illumina [13478961] (imputed)	N
938	chr1	46357505	46357507	rs199678740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p34.1		rs199678740-T	NR	3E-8		0.1792	[0.12-0.24] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
938	chr1	46359270	46359271	rs61296343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p34.1		rs61296343-A	NR	6E-16		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
938	chr1	46366024	46366025	rs140601200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKR1A1	5,352 Icelandic ancestry individuals	NA	1p34.1		rs140601200-T	0.02095	7E-121		1.42401	[1.3-1.54] unit decrease	Illumina [7506463] (imputed)	N
938	chr1	46383019	46383020	rs41286710	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p34.1	NR	rs41286710-T	0.04929	1E-10		0.036901247	[0.026-0.048] unit decrease	Affymetrix [10549349] (imputed)	N
938	chr1	46383582	46383583	rs10789481	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p34.1		rs10789481-?	NR	4E-10		0.0127926	[0.0088-0.0168] unit increase	NR [6912294] (imputed)	N
938	chr1	46384140	46384141	rs12077974	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p34.1		rs12077974-A	0.26	8E-23		9.84	z score increase	Affymetrix [9061022] (imputed)	N
938	chr1	46384140	46384141	rs12077974	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p34.1	NR	rs12077974-A	0.2931	1E-17				NR [9056863] (imputed)	N
938	chr1	46384140	46384141	rs12077974	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.1	NR	rs12077974-A	0.2825	2E-7	(EA)	0.0364	[0.023-0.05] unit decrease	Illumina [~ 11800000] (imputed)	N
939	chr1	46425499	46425500	rs4420029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p34.1		rs4420029-A	NR	4E-16		0.0209	[0.016-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
939	chr1	46425499	46425500	rs4420029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs4420029-A	0.756889	8E-24				Affymetrix, Illumina [23114412] (imputed)	N
939	chr1	46432104	46432105	rs7520050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p34.1	MAST2	rs7520050-C	0.412287	4E-14		0.017167842	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr1	46432104	46432105	rs7520050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs7520050-C	0.432282	5E-13				Affymetrix, Illumina [23467995] (imputed)	N
939	chr1	46432104	46432105	rs7520050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p34.1	NR	rs7520050-C	0.411145	5E-16		0.016122	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
939	chr1	46432104	46432105	rs7520050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p34.1	MAST2	rs7520050-C	0.4139	3E-11		0.02463396	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr1	46432104	46432105	rs7520050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1p34.1	MAST2	rs7520050-C	0.4138	8E-21		0.03441948	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr1	46440827	46440828	rs77213763	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p34.1	NR	rs77213763-C	NR	2E-12		0.0601	[0.043-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
939	chr1	46440827	46440828	rs77213763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p34.1		rs77213763-?	NR	4E-14				NR [~ 8900000] (imputed)	N
939	chr1	46441649	46441650	rs367917283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p34.1	MAST2	rs367917283-C	0.4656	2E-58		0.035889916	[0.032-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr1	46441649	46441650	rs367917283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p34.1	MAST2	rs367917283-C	0.465558	1E-15		0.017854294	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
939	chr1	46441649	46441650	rs367917283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p34.1	MAST2	rs367917283-C	0.465595	8E-20		0.0196253	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
939	chr1	46441649	46441650	rs367917283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p34.1	MAST2	rs367917283-C	0.465621	2E-19		0.020082487	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
939	chr1	46441663	46441664	rs11311601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p34.1		rs11311601-C	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
939	chr1	46441663	46441664	rs11311601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p34.1		rs11311601-C	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
939	chr1	46451749	46451750	rs149015592	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	1p34.1		rs149015592-C	NR	7E-7		4.6061726	NR	Affymetrix [7846216] (imputed)	N
939	chr1	46471514	46471515	rs12403530	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p34.1	PIK3R3	rs12403530-?	NR	6E-6	(PC 34:2)	0.43001583	[0.24-0.62] unit increase	Affymetrix [at least 2500000] (imputed)	N
939	chr1	46487551	46487552	rs2275426	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p34.1	NA	rs2275426-A	0.4186	5E-12		0.0113	[0.0082-0.0144] unit increase	NR [~ 27400000] (imputed)	N
939	chr1	46487551	46487552	rs2275426	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p34.1	PRDX1, TMEM69, TSPAN1, LRRC41, FAAH, AKR1A1, IPP, PIK3R3, POMGNT1, NSUN4, DMBX1, NASP, LURAP1, LOC729041, CCDC17, RAD54L, GPBP1L1, UQCRH, RPS15AP10	rs2275426-A	0.430420635116776	8E-10		0.017272513	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
939	chr1	46487551	46487552	rs2275426	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p34.1	MAST2	rs2275426-A	0.424	3E-6	(EA)	0.015	[0.0087-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
939	chr1	46487551	46487552	rs2275426	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p34.1	MAST2	rs2275426-A	0.424	2E-6		0.014	[0.0084-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
939	chr1	46493459	46493460	rs1707336	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p34.1		rs1707336-T	0.5612	4E-13		0.10941548	[0.079-0.14] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
939	chr1	46493459	46493460	rs1707336	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p34.1	MAST2	rs1707336-G		5E-27		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
939	chr1	46495023	46495024	rs3795318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p34.1		rs3795318-?	NR	5E-18				NR [~ 8900000] (imputed)	N
939	chr1	46496708	46496709	rs925524	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p34.1	NR	rs925524-G	0.71	7E-12		0.00816672	[0.0058-0.0105] unit increase	NR [9732723] (imputed)	N
939	chr1	46496708	46496709	rs925524	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p34.1	NR	rs925524-G	0.71	3E-8		0.015557314	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
939	chr1	46497499	46497500	rs9429088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p34.1	MAST2	rs9429088-A	0.435449	1E-32		0.026635235	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr1	46497499	46497500	rs9429088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p34.1	MAST2	rs9429088-A	0.435455	6E-38		0.028677741	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr1	46497499	46497500	rs9429088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs9429088-A	0.476948	3E-71				Affymetrix, Illumina [24332387] (imputed)	N
939	chr1	46497499	46497500	rs9429088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs9429088-A	0.475815	2E-44				Affymetrix, Illumina [24653286] (imputed)	N
939	chr1	46497499	46497500	rs9429088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs9429088-A	0.47415	2E-49				Affymetrix, Illumina [24558453] (imputed)	N
939	chr1	46497499	46497500	rs9429088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p34.1		rs9429088-?	NR	1E-64				NR [~ 8900000] (imputed)	N
939	chr1	46505053	46505054	rs7538978	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	1p34.1	PIK3R3	rs7538978-?	NR	5E-12		0.0293	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
939	chr1	46505146	46505147	rs1707322	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p34.1	NA	rs1707322-A	0.3155	2E-14		0.0136	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
939	chr1	46505146	46505147	rs1707322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p34.1	PIK3R3	rs1707322-G	0.7021	2E-7		0.0226	[0.014-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
939	chr1	46505146	46505147	rs1707322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p34.1	PIK3R3	rs1707322-?	NR	7E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
939	chr1	46505146	46505147	rs1707322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p34.1	PIK3R3	rs1707322-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
939	chr1	46505146	46505147	rs1707322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p34.1	PIK3R3	rs1707322-G	0.7021	3E-7	(men)	0.0292	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
939	chr1	46505146	46505147	rs1707322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p34.1	PIK3R3	rs1707322-G	0.7021	2E-8		0.0216	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
939	chr1	46506343	46506344	rs41302776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p34.1	NR	rs41302776-A	NR	2E-10		0.0388	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
939	chr1	46513011	46513012	rs1612092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p34.1	PIK3R3, RP4-533D7.4	rs1612092-C	0.4354	1E-10		0.02333103	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr1	46526184	46526185	rs72677528	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p34.1	PIK3R3	rs72677528-G	0.0286701	5E-27	(ribitol)	0.738	[0.6-0.87] unit decrease	Illumina [13039987] (imputed)	N
940	chr1	46541678	46541679	rs12142296	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p34.1	PIK3R3	rs12142296-T	0.8643	1E-14		0.1716	[0.13-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
940	chr1	46555299	46555300	rs785482	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1p34.1	NR	rs785482-?		2E-8				NR [7428630] (imputed)	N
940	chr1	46563679	46563680	rs1085244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p34.1		rs1085244-?	NR	1E-16				NR [~ 8900000] (imputed)	N
940	chr1	46576542	46576542	rs35534130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p34.1	PIK3R3	rs35534130-GT	0.412492	8E-25		0.023421977	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr1	46576542	46576542	rs35534130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p34.1	PIK3R3	rs35534130-GT	0.412564	4E-9		0.01348575	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr1	46576542	46576542	rs35534130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p34.1	PIK3R3	rs35534130-GT	0.412503	1E-24		0.023409842	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr1	46576542	46576542	rs35534130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p34.1	PIK3R3	rs35534130-GT	0.412592	9E-12		0.015563179	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
940	chr1	46576542	46576542	rs35534130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p34.1	NR	rs35534130-I	0.412109	2E-26		0.022354	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
940	chr1	46581932	46581933	rs11211257	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p34.1	PIK3R3	rs11211257-A	0.819	7E-12		0.0027	[0.0017-0.0037] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
940	chr1	46581932	46581933	rs11211257	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p34.1	PIK3R3	rs11211257-A	0.8974	6E-15		0.0039	[0.0027-0.0051] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
940	chr1	46588502	46588503	rs10890383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs10890383-G	0.453644	7E-17				Affymetrix, Illumina [20825802] (imputed)	N
940	chr1	46596236	46596236	rs66538782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p34.1	PIK3R3	rs66538782-GA	0.301	3E-10		0.02480291	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
940	chr1	46598902	46598903	rs1355642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p34.1	NR	rs1355642-A	0.537465	2E-14				Affymetrix, Illumina [22063850] (imputed)	N
940	chr1	46598902	46598903	rs1355642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p34.1		rs1355642-?	NR	9E-16				NR [~ 8900000] (imputed)	N
940	chr1	46600916	46600917	rs1707302	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p34.1		rs1707302-A	NR	3E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
940	chr1	46600916	46600917	rs1707302	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p34.1	PIK3R3, LOC101929626	rs1707302-G	0.659999999999999	3E-8	(EA)	1.0416667	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
940	chr1	46602843	46602844	rs1416706	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p34.1	NR	rs1416706-A	0.669	6E-10		0.00870364	[0.006-0.0115] unit increase	NR [~ 9732723] (imputed)	N
940	chr1	46604314	46604315	rs1707308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p34.1	RP4-533D7.5, PIK3R3	rs1707308-A	0.461537	3E-14		0.016784588	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr1	46604314	46604315	rs1707308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p34.1	NR	rs1707308-G	0.537402	5E-17		0.0158	[0.012-0.019] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
940	chr1	46605727	46605728	rs1707334	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.1	PIK3R3	rs1707334-A	0.535967	9E-10	(10 ms)	0.0344695	[0.024-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr1	46605727	46605728	rs1707334	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p34.1	PIK3R3	rs1707334-A	0.535967	6E-10	(12 ms)	0.0344868	[0.024-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr1	46623096	46623097	rs12029005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p34.1	NR	rs12029005-C	NR	7E-12		0.0231	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
940	chr1	46629689	46629690	rs12029134	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	1p34.1	NR	rs12029134-?		4E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
940	chr1	46657219	46657220	rs7552312	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Body fat distribution (trunk fat ratio)	2,109 White British ancestry male individuals	NA	1p34.1		rs7552312-T	NR	4E-8		0.01	unit decrease	NR [6137607] (imputed)	N
941	chr1	46747300	46747301	rs12142240	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	1p34.1	RAD54L	rs12142240-T	0.68	7E-9		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
941	chr1	46771621	46771622	rs55867821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p33	UQCRH	rs55867821-T	NR	1E-8		0.0575315	[0.038-0.077] unit increase	Affymetrix [323123] (imputed)	N
941	chr1	46780284	46780285	rs112869704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1p33		rs112869704-?	NR	4E-13				NR [~ 8900000] (imputed)	N
942	chr1	46855100	46855101	rs190112169	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1p33	NSUN4, FAAH	rs190112169-A	0.0111	3E-6		0.4479	[0.26-0.63] unit decrease	NR [NR] (imputed)	N
942	chr1	46855100	46855101	rs190112169	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	1p33	NSUN4, FAAH	rs190112169-A	NR	3E-6		0.4479	[0.26-0.63] unit decrease	NR [NR] (imputed)	N
942	chr1	46870760	46870761	rs324420	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	N-acyl ethanolamine levels	999 European ancestry individuals from 196 families	NR	1p33	FAAH	rs324420-?		5E-9	(PEA)	0.3	[0.2-0.4] unit increase	Illumina [5280459] (imputed)	N
942	chr1	46870760	46870761	rs324420	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	N-acyl ethanolamine levels	999 European ancestry individuals from 196 families	NR	1p33	FAAH	rs324420-?		2E-8	(DHEA)	0.3	[0.2-0.4] unit increase	Illumina [5280459] (imputed)	N
942	chr1	46870760	46870761	rs324420	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	N-acyl ethanolamine levels	999 European ancestry individuals from 196 families	NR	1p33	FAAH	rs324420-?		1E-9	(sumEA)	0.32	[0.22-0.42] unit increase	Illumina [5280459] (imputed)	N
942	chr1	46870760	46870761	rs324420	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	N-acyl ethanolamine levels	999 European ancestry individuals from 196 families	NR	1p33	FAAH	rs324420-?		1E-8	(LEA)	0.31	[0.2-0.42] unit increase	Illumina [5280459] (imputed)	N
942	chr1	46870760	46870761	rs324420	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	N-acyl ethanolamine levels	999 European ancestry individuals from 196 families	NR	1p33	FAAH	rs324420-?		1E-10	(VEA)	0.31	[0.21-0.41] unit increase	Illumina [5280459] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH	rs324420-C	0.6811	5E-56	(linoleoyl ethanolamide)	0.385	[0.34-0.43] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH	rs324420-C	0.6811	3E-83	(oleoyl ethanolamide)	0.475	[0.43-0.52] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH	rs324420-C	0.6811	2E-97	(N-palmitoylglycine)	0.515	[0.47-0.56] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH	rs324420-C	0.6811	2E-31	(N-oleoyltaurine)	0.282	[0.23-0.33] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH	rs324420-C	0.6811	1E-13	(N-oleoylserine)	0.181	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46870760	46870761	rs324420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1p33	FAAH	rs324420-C	0.6811	2E-31	(N-oleoyltaurine)	0.282	[0.23-0.33] unit decrease	Illumina [13039987] (imputed)	N
942	chr1	46872697	46872698	rs324418	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	1p33	CYP4A11, FAAH	rs324418-?	NR	6E-12	(N-palmitoylglycine)	0.42	[NR] unit increase	Illumina [14760605] (imputed)	N
942	chr1	46875066	46875067	rs11576941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p33		rs11576941-?	NR	1E-7				NR [~ 8900000] (imputed)	N
942	chr1	46880726	46880727	rs45512099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p33		rs45512099-?	NR	1E-7				NR [~ 8900000] (imputed)	N
942	chr1	46890685	46890686	rs116435220	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	1p33	FAAH	rs116435220-?	NR	2E-8	(Total cholesterol)			Illumina [up to 10879115] (imputed)	N
942	chr1	46895640	46895641	rs1571138	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	FAAH, LOC729041	rs1571138-A	0.320428	6E-12	(palmitoyl ethanolamide)	0.161	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
942	chr1	46895640	46895641	rs1571138	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1p33	FAAH, LOC729041	rs1571138-A	0.320428	6E-12	(palmitoyl ethanolamide)	0.161	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
942	chr1	46898062	46898063	rs11806551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p33		rs11806551-?	NR	5E-8				NR [~ 8900000] (imputed)	N
943	chr1	46930431	46930432	rs13374145	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	1p33	DMBX1, FAAHP1, LINC01398	rs13374145-?		2E-6		0.7635	[NR] unit decrease	Affymetrix [NR] (imputed)	N
943	chr1	46951416	46951417	rs548075299	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p33	NR	rs548075299-T	0.0122	1E-8	(IGHG3)	0.1908	NR unit increase	Illumina [1671387] (imputed)	N
943	chr1	46989471	46989472	rs17102247	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	1p33	DMBX1, MKNK1_AS1	rs17102247-C	0.05	4E-6	(men)	0.238	[0.14-0.34] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
943	chr1	46990043	46990044	rs12408243	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p33	NR	rs12408243-T	0.489	5E-8		0.00588791	[0.0038-0.008] unit increase	NR [9732723] (imputed)	N
943	chr1	46990456	46990457	rs1267303	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	1p33	DMBX1, KNCN	rs1267303-?	NR	4E-9		0.025	[0.016-0.033] unit increase	Illumina [12039491] (imputed)	N
943	chr1	46990680	46990681	rs7542172	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p33	DMBX1	rs7542172-A	0.15	2E-12	(erythritol)	0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
943	chr1	47045212	47045213	rs11211309	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	1p33	MKNK1, KCN1, MOBKL2C	rs11211309-A	NR	2E-6		1.41	[NR]	Illumina [up to 9792010] (imputed)	N
943	chr1	47049746	47049747	rs3766235	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	1p33	MKNK1	rs3766235-C	0.030359999999999998	7E-6		17.8054	[10.06-25.55] unit increase	Affymetrix [NR] (imputed)	N
944	chr1	47080677	47080678	rs139537100	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	1p33	MOB3C	rs139537100-C	0.988	5E-7		1.7857143		Illumina [31276]	N
944	chr1	47080677	47080678	rs139537100	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	1p33	MOB3C	rs139537100-C	0.988	5E-8		4.347826		Illumina [31514]	N
944	chr1	47179309	47179310	rs10789491	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	1p33	KIAA0494	rs10789491-G	NR	1E-6		0.312	[0.19-0.44] ug/L increase	NR [NR]	N
945	chr1	47281826	47281827	rs3766197	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p33	CYP4A11, CYP4A22, CYP4B1	rs3766197-?	NR	4E-12	(10undecenoate111n1)	0.05291	[NR] unit increase	Affymetrix [655658]	N
945	chr1	47284922	47284923	rs12059860	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry female individuals	NA	1p33	CYP4B1	rs12059860-C	0.01	8E-6		0.619	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
945	chr1	47309832	47309833	rs3863632	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p33	CYP4B1	rs3863632-T	0.12	4E-14	(glucuronide of C10H18O2 (11))	0.388	[0.29-0.49] unit increase	Illumina [7750367] (imputed)	N
946	chr1	47331965	47331966	rs6678639	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	1p33	CYP4A11	rs6678639-A	0.86	8E-86	(10-undecenoate (11:1n1)/X-11438)	0.085	[0.077-0.093] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
946	chr1	47347426	47347427	rs6663731	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p33	CYP4A11	rs6663731-A	0.89	1E-14	(tetradecanedioate)	0.062	[0.046-0.078] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
946	chr1	47347426	47347427	rs6663731	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p33	CYP4A11	rs6663731-A	0.88	5E-11	(hexadecanedioate)	0.045	[0.031-0.059] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
946	chr1	47365291	47365292	rs28597732	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p33	CYP4A11	rs28597732-A	0.13	5E-13	(X - 21827)	0.572	[0.42-0.73] unit decrease	Illumina [7750367] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	1p33	CYP4A11, FAAH	rs4507958-?	NR	4E-14	(10-undecenoate (11:1n1))	0.42	[NR] unit increase	Illumina [14760605] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs4507958-A	0.824005	6E-61	(10-undecenoate (11:1n1))	0.498	[0.44-0.56] unit decrease	Illumina [13039987] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs4507958-A	0.824005	6E-23	(3-hydroxysebacate)	0.286	[0.23-0.34] unit increase	Illumina [13039987] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs4507958-A	0.824005	6E-14	(pimeloylcarnitine/3-methyladipoylcarnitine (C7-DC))	0.213	[0.16-0.27] unit increase	Illumina [13039987] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs4507958-A	0.824005	4E-16	(tetradecanedioate)	0.245	[0.19-0.3] unit increase	Illumina [13039987] (imputed)	N
946	chr1	47383040	47383041	rs4507958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs4507958-A	0.824005	1E-13	(dodecanedioate)	0.224	[0.17-0.28] unit increase	Illumina [13039987] (imputed)	N
946	chr1	47389612	47389613	rs12132488	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p33	CYP4Z2P, CYP4A11	rs12132488-T	0.200599	5E-12	(adipoylcarnitine (C6-DC))	0.193	[0.14-0.25] unit decrease	Illumina [13039987] (imputed)	N
946	chr1	47396161	47396162	rs9333029	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p33	CYP4A11	rs9333029-A	0.87	2E-61	(10-undecenoate (11:1n1))	0.07	[0.062-0.078] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
946	chr1	47398227	47398228	rs1078311	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p33	intergenic	rs1078311-?	NR	1E-13	(10undecenoate111n1)	0.05602	[NR] unit increase	Affymetrix [655658]	N
946	chr1	47398495	47398496	rs1126742	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p33	CYP4A11	rs1126742-G	0.14	6E-20	(glucuronide of C10H18O2 (12))	0.345	[0.27-0.42] unit increase	Illumina [7750367] (imputed)	N
946	chr1	47404185	47404186	rs9332998	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p33	CYP4A	rs9332998-C	0.135	5E-32	(SM-9 + 17 other traits)	0.159	[NR] unit decrease	Affymetrix, Illumina [534665]	N
946	chr1	47428557	47428558	rs150968551	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p33	NR	rs150968551-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
947	chr1	47557932	47557933	rs116504637	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	1p33	CYP4Z1	rs116504637-T	0.74	1E-6		0.35	[0.21-0.49] unit increase	Illumina [12910578] (imputed)	N
948	chr1	47640350	47640351	rs183888780	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p33	NR	rs183888780-?	NR	9E-6		0.975457	[0.55-1.41] unit increase	NR [13958389] (imputed)	N
948	chr1	47655815	47655816	rs2248907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1p33		rs2248907-G	0.789376	8E-10		0.0272272	[0.019-0.036] unit increase	Illumina [13476299] (imputed)	N
948	chr1	47669324	47669325	rs12760654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p33		rs12760654-?	NR	1E-8				NR [~ 8900000] (imputed)	N
948	chr1	47670524	47670525	rs12144626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p33		rs12144626-C	NR	9E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
948	chr1	47670524	47670525	rs12144626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p33		rs12144626-C	NR	1E-13		0.0171	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
948	chr1	47670524	47670525	rs12144626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p33		rs12144626-?	NR	3E-17				NR [~ 8900000] (imputed)	N
948	chr1	47670910	47670911	rs4134058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p33		rs4134058-C	NR	2E-55		0.0374	[0.033-0.042] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
948	chr1	47670910	47670911	rs4134058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p33		rs4134058-C	NR	1E-37		0.0305	[0.026-0.035] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
948	chr1	47670910	47670911	rs4134058	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p33		rs4134058-T	0.457	5E-52		0.17	[-0.19--0.15] % decrease	Affymetrix [NR] (imputed)	N
948	chr1	47670910	47670911	rs4134058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p33		rs4134058-C	0.543134	6E-35		0.028641839	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47670910	47670911	rs4134058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p33		rs4134058-?	NR	4E-61				NR [~ 8900000] (imputed)	N
948	chr1	47671322	47671323	rs2181223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p33	NR	rs2181223-A	0.87226	1E-10		0.017676	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
948	chr1	47673801	47673802	rs1008455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs1008455-C	0.842923	3E-10				Affymetrix, Illumina [24588908] (imputed)	N
948	chr1	47678457	47678458	rs6669341	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p33	TAL1	rs6669341-A	0.417338	1E-14		0.0106846	[0.008-0.0134] unit increase	Affymetrix [12370749]	N
948	chr1	47679257	47679258	rs4926524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p33	TAL1	rs4926524-T	0.543229	7E-73		0.039779216	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47679257	47679258	rs4926524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p33	TAL1	rs4926524-T	0.543229	5E-104		0.048204858	[0.044-0.053] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47679257	47679258	rs4926524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p33	TAL1	rs4926524-T	0.543229	3E-44		0.0388826	[0.035-0.043] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47679365	47679366	rs4926725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p33	TAL1	rs4926725-T	0.543241	3E-13		0.016160533	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47679365	47679366	rs4926725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs4926725-A	0.466504	9E-15				Affymetrix, Illumina [22063850] (imputed)	N
948	chr1	47679485	47679486	rs4926726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p33	NR	rs4926726-G	0.455191	2E-17		0.015916	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
948	chr1	47680977	47680978	rs11211479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs11211479-C	0.446339	3E-97				Affymetrix, Illumina [24246363] (imputed)	N
948	chr1	47680977	47680978	rs11211479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs11211479-C	0.437693	3E-58				Affymetrix, Illumina [20825802] (imputed)	N
948	chr1	47681725	47681726	rs2798355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p33	TAL1	rs2798355-G	0.869852	6E-11		0.0425017	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47681760	47681761	rs6695898	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p33	TAL1	rs6695898-A	0.5455	2E-25		0.03677282	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr1	47682016	47682017	rs7664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p33	NR	rs7664-T	0.41311	6E-17		0.016213	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
948	chr1	47682016	47682017	rs7664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p33		rs7664-?	NR	2E-10				NR [~ 8900000] (imputed)	N
948	chr1	47683606	47683607	rs2070929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs2070929-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
948	chr1	47683606	47683607	rs2070929	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p33	NA	rs2070929-C	0.2858	3E-13		0.0137	[0.01-0.0174] unit increase	NR [~ 27400000] (imputed)	N
948	chr1	47684676	47684677	rs977747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs977747-T	0.425676	1E-14				Affymetrix, Illumina [17210439] (imputed)	N
948	chr1	47684676	47684677	rs977747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p33	NR	rs977747-G	0.592143417685155	1E-8		0.0053299186	[0.0035-0.0072] unit decrease	NR [NR]	N
948	chr1	47684676	47684677	rs977747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p33	NR	rs977747-G	0.592143417685155	5E-8		0.008257128	[0.0053-0.0112] unit decrease	NR [NR]	N
948	chr1	47684676	47684677	rs977747	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p33	NR	rs977747-T	NR	2E-11		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
948	chr1	47684676	47684677	rs977747	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p33	NR	rs977747-T	0.390	1E-8		0.016	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr1	47684676	47684677	rs977747	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	TAL1	rs977747-T	0.403	2E-8		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr1	47684676	47684677	rs977747	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	TAL1	rs977747-T	0.391	9E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr1	47692034	47692035	rs61782665	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p33		rs61782665-A	0.42	1E-12				NR [NR] (imputed)	N
948	chr1	47692034	47692035	rs61782665	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p33		rs61782665-A	0.42	4E-15		0.012	% increase	NR [NR] (imputed)	N
948	chr1	47692280	47692281	rs741958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p33	TAL1, RP1-18D14.7	rs741958-T	0.9254436	5E-10		0.027309457	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47693219	47693220	rs11211480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p33		rs11211480-G	NR	2E-13		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
948	chr1	47693219	47693220	rs11211480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p33	NR	rs11211480-G	0.548193	6E-98		0.038265	[0.035-0.042] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
948	chr1	47693219	47693220	rs11211480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p33	NR	rs11211480-G	0.546964	8E-60		0.03155	[0.028-0.035] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
948	chr1	47693219	47693220	rs11211480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p33		rs11211480-?	NR	3E-8				NR [~ 8900000] (imputed)	N
948	chr1	47693219	47693220	rs11211480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p33		rs11211480-?	NR	5E-19				NR [~ 8900000] (imputed)	N
948	chr1	47693219	47693220	rs11211480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p33	RP1-18D14.7	rs11211480-G	0.5453	8E-17		0.02955099	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr1	47693219	47693220	rs11211480	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1p33	CYP4A22, LINC00853, PDZK1IP1, TAL1, STIL	rs11211480-G	0.5253	2E-6		1.9278966	[1.66-2.2]	Illumina [8809853] (imputed)	N
948	chr1	47693980	47693981	rs7534271	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p33		rs7534271-?	NR	3E-8		0.0165	unit increase	NR [NR]	N
948	chr1	47704239	47704240	rs6701381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p33		rs6701381-G	0.585495	2E-12		0.016020533	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
948	chr1	47709125	47709126	rs765862	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p33	STIL	rs765862-T	NR	3E-8		0.0215762	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
949	chr1	47787953	47787954	rs11211514	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	1p33		rs11211514-T	NR	2E-9		0.0258	[0.018-0.034] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
949	chr1	47799998	47799999	rs4600090	34270794	Watts K	2021-07-16	Int J Cancer	Genome-wide association studies of toxicity to oxaliplatin and fluoropyrimidine chemotherapy with or without cetuximab in 1800 patients with advanced colorectal cancer.	Adverse response to chemotherapy in colorectal cancer (FOLFOX,Cetuximab) (Nausea)	360 European ancestry individuals	NA	1p33		rs4600090-?		6E-6		4.0	[2.2-7.2]	NR [4176780] (imputed)	N
950	chr1	47854513	47854514	rs17103186	24963161	Chen P	2014-06-24	Hum Mol Genet	CMPK1 and RBP3 are associated with corneal curvature in Asian populations.	Corneal curvature	3,178 Chinese ancestry individuals, 2,138 Malay ancestry individuals, 2,124 Asian Indian ancestry individuals	2,473 Chinese ancestry individuals, 2,747 Japanese ancestry individuals	1p33	CMPK1	rs17103186-C	0.82	3E-12		0.11	[0.071-0.149] unit increase	Illumina [~ 7000000] (imputed)	N
950	chr1	47856479	47856480	rs56270164	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs56270164-?	NR	7E-11	(X4th ventricle)			NR [9227495] (imputed)	N
950	chr1	47856610	47856611	rs10437097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p33	RP11-511I2.2	rs10437097-A	0.170033	5E-10		0.019714333	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
950	chr1	47870660	47870661	rs4926854	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p33	FOXD2	rs4926854-?	NR	3E-8		0.6658	[0.34-0.99] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
950	chr1	47871572	47871573	rs11211532	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p33	NR	rs11211532-A	0.396961	1E-8		0.0178026	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
950	chr1	47902816	47902817	rs3738316	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p33	LINC01389	rs3738316-?	NR	2E-13		0.024755303	[0.018-0.031] unit decrease	Illumina [27896057] (imputed)	N
950	chr1	47915076	47915077	rs17103249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p33		rs17103249-G	0.22664	5E-11		0.0156501	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
950	chr1	47915174	47915175	rs565692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p33		rs565692-T	NR	3E-27		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
950	chr1	47915232	47915233	rs564914	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p33	NR	rs564914-?	NR	1E-6		0.02764494	[0.016-0.039] unit increase	Illumina [34656550] (imputed)	N
950	chr1	47915232	47915233	rs564914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p33		rs564914-?	NR	9E-29				NR [~ 8900000] (imputed)	N
950	chr1	47918820	47918821	rs527430	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (L. iners)	171 Kenyan ancestry individuals	NA	1p33	FOXD2, TRABD2B	rs527430-A	0.06	7E-7		1.05	NR unit increase	Illumina [336151] (imputed)	N
950	chr1	47918820	47918821	rs527430	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	1p33	FOXD2	rs527430-G	0.39	4E-7	(Citalopram+Buspirone, General side effects)			Affymetrix [421789]	N
950	chr1	47936695	47936696	rs505399	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs505399-?	NR	2E-9	(X4th ventricle)			NR [9227495] (imputed)	N
950	chr1	47940079	47940080	rs11211538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p33		rs11211538-T	0.549558	2E-9		0.014045663	[0.0094-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
950	chr1	47940079	47940080	rs11211538	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs11211538-?	NR	5E-9	(left parahippocampal)			NR [9227495] (imputed)	N
950	chr1	47940079	47940080	rs11211538	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs11211538-?	NR	1E-10	(X4th ventricle)			NR [9227495] (imputed)	N
950	chr1	47945369	47945370	rs6675690	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	1p33		rs6675690-G	NR	8E-12		7.31	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
950	chr1	47947740	47947741	rs6683032	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p33	NR	rs6683032-C	NR	2E-13		0.0459929	NR unit increase	NR [NR] (imputed)	N
950	chr1	47952273	47952274	rs61784834	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p33	FOXD2	rs61784834-C	NR	7E-12		0.0975472	[0.07-0.125] unit increase	Affymetrix [27512692] (imputed)	N
950	chr1	47953053	47953054	rs6665323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p33	RP4-666O22.3	rs6665323-C	0.613962	1E-9		0.014878826	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr1	47953053	47953054	rs6665323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p33	RP4-666O22.3	rs6665323-C	0.613978	3E-11		0.015126065	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr1	47953053	47953054	rs6665323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p33	RP4-666O22.3	rs6665323-C	0.613965	4E-9		0.013935112	[0.0093-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr1	47953756	47953757	rs11578572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs11578572-G	0.483595	2E-23				Affymetrix, Illumina [24332387] (imputed)	N
950	chr1	47953756	47953757	rs11578572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p33	NR	rs11578572-G	0.612048	4E-24		0.019146	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
950	chr1	47954510	47954511	rs12125691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p33		rs12125691-?	NR	3E-36				NR [~ 8900000] (imputed)	N
950	chr1	47955426	47955427	rs17371253	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1p33		rs17371253-T	0.42	4E-8		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
950	chr1	47957080	47957081	rs17379854	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p33	NR	rs17379854-A	0.424132	5E-36		0.0388185	[0.033-0.045] unit increase	NR [19129689] (imputed)	N
950	chr1	47961173	47961174	rs17453832	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1p33	FOXD2	rs17453832-T	0.5353	4E-16		0.0205985	[0.016-0.026] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
950	chr1	47961690	47961691	rs10157710	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	1p33	FOXD2	rs10157710-T	0.8009	1E-13		0.026	[0.018-0.034] unit increase	Affymetrix [19420026] (imputed)	N
950	chr1	47961690	47961691	rs10157710	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	1p33	FOXD2, TRABD2B	rs10157710-T	0.802	3E-13		0.01599	[0.012-0.02] unit increase	Affymetrix [11709857] (imputed)	N
950	chr1	47961690	47961691	rs10157710	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1p33	FOXD2, TRABD2B	rs10157710-T	0.802	1E-19		0.019	[0.015-0.023] unit increase	Affymetrix [11709857] (imputed)	N
950	chr1	47965129	47965130	rs1337526	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1p33	FOXD2	rs1337526-G	0.801	6E-27	(EA)	0.027	[0.021-0.033] unit increase	NR [12082474] (imputed)	N
950	chr1	47965129	47965130	rs1337526	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1p33	FOXD2	rs1337526-A	NR	1E-28		0.0271	[0.022-0.032] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
950	chr1	47965129	47965130	rs1337526	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1p33	FOXD2	rs1337526-A	0.1983	1E-27		0.027088	[0.022-0.032] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
950	chr1	47965129	47965130	rs1337526	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	1p33	FOXD2	rs1337526-G	NR	3E-16		1.0700443	[1.05-1.09]	Affymetrix, Illumina [8326000] (imputed)	N
950	chr1	47971282	47971283	rs6693428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p33		rs6693428-C	NR	1E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
951	chr1	47974122	47974123	rs61784835	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	1p33		rs61784835-T	0.36	9E-18				NR [13131314] (imputed)	N
951	chr1	47974122	47974123	rs61784835	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	1p33		rs61784835-T	0.36	5E-20				Affymetrix [9061022] (imputed)	N
951	chr1	47974122	47974123	rs61784835	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p33		rs61784835-T	0.36	5E-324				Affymetrix [9061022] (imputed)	N
951	chr1	47974122	47974123	rs61784835	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs61784835-?	NR	7E-10	(right parahippocampal)			NR [9227495] (imputed)	N
951	chr1	47975599	47975599	rs34620652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p33	AL356458.1	rs34620652-C	NR	6E-12		0.0334148	[0.024-0.043] unit increase	Affymetrix [323123] (imputed)	N
951	chr1	47977191	47977192	rs6588406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p33	AL356458.1	rs6588406-A	NR	7E-11		0.0398474	[0.028-0.052] unit increase	Affymetrix [323123] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	1p33		rs6658111-G	0.36	9E-17				NR [13131314] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	5,199 individuals	NA	1p33		rs6658111-G	0.36	1E-16				Affymetrix [9061022] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p33		rs6658111-G	0.36	4E-229		32.31	z score increase	Affymetrix [9061022] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	1p33		rs6658111-G	0.36	7E-13				NR [13131314] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	1p33		rs6658111-G	0.36	4E-16				Affymetrix [9061022] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p33		rs6658111-G	0.36	1E-143		25.52	z score increase	Affymetrix [9061022] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p33	NR	rs6658111-G	0.3647	1E-17				NR [9056863] (imputed)	N
951	chr1	47980915	47980916	rs6658111	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p33	NR	rs6658111-G	0.3647	1E-17				NR [9056863] (imputed)	N
951	chr1	47980915	47980916	rs6658111	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p33		rs6658111-?	NR	2E-126				NR [9705931] (imputed)	N
951	chr1	47980915	47980916	rs6658111	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	1p33	AL356458.1	rs6658111-G	0.37	1E-10				NR [9312144] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	1p33	FOXD2	rs6658111-?		8E-10	(Fusiform)			Affymetrix, Illumina [NR] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	1p33	FOXD2	rs6658111-?		4E-11	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1p33	PRDM16	rs6658111-?		9E-20				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1p33	PRDM16	rs6658111-?		1E-35				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	1p33	PRKCZ	rs6658111-?		2E-10				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	1p33	PRKCZ	rs6658111-?		7E-44				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	1p33	PRKCZ	rs6658111-?		4E-20				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p33	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs6658111-?		2E-44				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p33	PRDM16	rs6658111-?		2E-19				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p33	STIL, CMPK1, FOXE3, FOXD2	rs6658111-?		2E-103				NR [7428630] (imputed)	N
951	chr1	47980915	47980916	rs6658111	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs6658111-?	NR	5E-10	(left lingual)			NR [9227495] (imputed)	N
951	chr1	47980915	47980916	rs6658111	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs6658111-?	NR	3E-19	(X4th ventricle)			NR [9227495] (imputed)	N
951	chr1	47980915	47980916	rs6658111	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs6658111-?	NR	1E-9	(right lingual)			NR [9227495] (imputed)	N
951	chr1	47980915	47980916	rs6658111	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs6658111-?	NR	1E-17	(left parahippocampal)			NR [9227495] (imputed)	N
951	chr1	47980915	47980916	rs6658111	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs6658111-?	NR	1E-10	(CSF)			NR [9227495] (imputed)	N
951	chr1	47984142	47984143	rs12118339	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p33	NR	rs12118339-?	NR	6E-9	(left parahippocampal)			NR [9227495] (imputed)	N
951	chr1	47996203	47996204	rs6688849	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	1p33	FOXD2	rs6688849-A	0.8195	4E-9		0.0485	[0.032-0.065] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
951	chr1	48002446	48002447	rs688540	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p33	FOXD2	rs688540-A	0.8673	3E-13		0.003	[0.002-0.004] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
951	chr1	48002446	48002447	rs688540	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p33	FOXD2	rs688540-A	0.8703	5E-11		0.0031	[0.0019-0.0043] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
951	chr1	48004857	48004858	rs12032932	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	1p33	NR	rs12032932-T	0.011	4E-6		167.0	[96-238] unit increase	NR [9714326] (imputed)	N
951	chr1	48009996	48009997	rs11582540	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	1p33	intergenic	rs11582540-?	NR	3E-6	(SF5)			Affymetrix [5476100] (imputed)	N
951	chr1	48019221	48019222	rs17420782	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	1p33	RPL21P24	rs17420782-G	0.16	9E-6	(Quantitative)	0.55	[NR] unit increase	Illumina [471581]	N
951	chr1	48022106	48022107	rs56011044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p33		rs56011044-T	NR	3E-17		0.0274	[0.021-0.034] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
951	chr1	48022106	48022107	rs56011044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p33		rs56011044-T	NR	8E-19		0.0295	[0.023-0.036] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
951	chr1	48022106	48022107	rs56011044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p33		rs56011044-T	0.096292	1E-16		0.031449202	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr1	48022106	48022107	rs56011044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p33		rs56011044-T	0.096303	8E-21		0.035829008	[0.028-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr1	48022106	48022107	rs56011044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs56011044-T	0.0752467	1E-21				Affymetrix, Illumina [24558453] (imputed)	N
951	chr1	48022106	48022107	rs56011044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p33	NR	rs56011044-T	0.096771	4E-23		0.031459	[0.025-0.038] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
951	chr1	48025062	48025063	rs685001	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	FOXD2	rs685001-C	0.362	9E-6	(LDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
951	chr1	48030349	48030350	rs11583750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p33		rs11583750-A	NR	2E-16		0.0286	[0.022-0.035] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
951	chr1	48030349	48030350	rs11583750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p33		rs11583750-A	0.0950299999999999	2E-17		0.03178938	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr1	48030349	48030350	rs11583750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p33	NR	rs11583750-A	0.0740722	7E-20				Affymetrix, Illumina [24653286] (imputed)	N
951	chr1	48030349	48030350	rs11583750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p33	NR	rs11583750-A	0.095109	1E-21		0.030257	[0.024-0.036] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
951	chr1	48030349	48030350	rs11583750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p33		rs11583750-?	NR	1E-17				NR [~ 8900000] (imputed)	N
951	chr1	48095892	48095893	rs116530786	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p33	NR	rs116530786-G	0.01045	3E-8	(HK1)	0.02939	NR unit increase	Illumina [1671387] (imputed)	N
951	chr1	48098405	48098406	rs2506991	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	1p33	LOC388630	rs2506991-G	0.269	2E-6	(Recessive model)	3.948	[2.101-7.418]	Illumina [733202]	N
951	chr1	48103138	48103139	rs10159356	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY_REDCITCYC..TCA.cycle.VIII..helicobacter.)	7,738 European ancestry individuals	NA	1p33		rs10159356-A	0.692040624338154	8E-9		0.14070804	[0.093-0.188] unit decrease	Illumina [5584686] (imputed)	N
952	chr1	48107909	48107910	rs12409365	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p33	TRABD2B	rs12409365-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
952	chr1	48109224	48109225	rs4926923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p33		rs4926923-?	NR	2E-8				NR [~ 8900000] (imputed)	N
952	chr1	48109224	48109225	rs4926923	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1p33	FLJ00388	rs4926923-T	0.9117	5E-10		0.1918	[0.13-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
952	chr1	48116939	48116941	rs36068213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p33		rs36068213-T	0.396194	1E-10		0.014912617	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
952	chr1	48116939	48116941	rs36068213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p33		rs36068213-T	0.396212	4E-11		0.015245547	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
952	chr1	48153139	48153140	rs1249090	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p33	intergenic	rs1249090-G		1E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
952	chr1	48153139	48153140	rs1249090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p33		rs1249090-?	NR	4E-11				NR [~ 8900000] (imputed)	N
952	chr1	48197213	48197214	rs143958513	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1p33	TRABD2B	rs143958513-C	0.0136	2E-7		0.0361	[0.023-0.05] unit increase	Affymetrix [~ 7740000] (imputed)	N
952	chr1	48203989	48203990	rs7544082	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	1p33	TRABD2B	rs7544082-?	NR	3E-6		1.16	[1.04-1.31]	Illumina [5768242] (imputed)	N
952	chr1	48216975	48216976	rs2165194	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Perceptual and visual search speed (trail making test A)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	1p33		rs2165194-G	0.41	2E-6		0.04775	[0.028-0.067] unit increase	NR [534934]	N
952	chr1	48233437	48233438	rs12409657	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	1p33	AL691459.1, TRABD2B	rs12409657-?	NR	2E-7				Illumina [540916] (imputed)	N
953	chr1	48254781	48254782	rs6588505	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	LOC388630	rs6588505-A	0.322	9E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
953	chr1	48321220	48321221	rs946836	22425255	Lopez LM	2012-03-15	Neurobiol Aging	A genome-wide search for genetic influences and biological pathways related to the brain's white matter integrity.	White matter integrity	535 European ancestry individuals	NA	1p33	LOC388630	rs946836-T	0.33	5E-6		0.3	[0.17-0.43] unit increase	Illumina [542050]	N
953	chr1	48331521	48331522	rs7536189	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	1p33	TRABD2B	rs7536189-C	NR	2E-6		0.6532		Illumina [592007] (imputed)	N
953	chr1	48341004	48341005	rs10493130	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	1p33	NR	rs10493130-G	0.68	5E-6		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
953	chr1	48341004	48341005	rs10493130	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	1p33	NR	rs10493130-G	0.68	3E-8		0.01	[0.0041-0.0159] unit decrease	NR [7369691] (imputed)	N
953	chr1	48341004	48341005	rs10493130	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p33	TRABD2B	rs10493130-G	0.679843	2E-9		0.0117662	[0.0079-0.0156] unit decrease	NR [13737936] (imputed)	N
954	chr1	48480945	48480946	rs114026833	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs114026833-?	NR	7E-7		0.031353	[0.019-0.044] unit increase	Affymetrix [805426] (imputed)	N
955	chr1	48520616	48520617	rs6699629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p33		rs6699629-?	NR	8E-10				NR [~ 8900000] (imputed)	N
955	chr1	48521486	48521487	rs302686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p33		rs302686-?	NR	1E-9				NR [~ 8900000] (imputed)	N
955	chr1	48525025	48525026	rs34240669	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p33	NR	rs34240669-A	0.280248	1E-9		0.0207112	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
955	chr1	48530257	48530258	rs728864	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p33		rs728864-?	NR	4E-9		0.0127449	[0.0085-0.017] unit decrease	Affymetrix [20259828] (imputed)	N
955	chr1	48536797	48536798	rs584425	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p33	SKINT1L	rs584425-A	0.3333	1E-10		0.0212	[0.015-0.028] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
955	chr1	48536797	48536798	rs584425	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p33	SKINT1L	rs584425-A	0.3531	1E-6		0.019502	[0.012-0.027] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
955	chr1	48536797	48536798	rs584425	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1p33	NR	rs584425-A	0.6775	6E-6	(women)	0.0219	[0.012-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
955	chr1	48547847	48547848	rs80076962	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p33	RP11-193P11.3, CYP46A4P, SKINTL, TRABD2B	rs80076962-?		8E-6		1.815871	[1.41-2.30]	Illumina [9389922] (imputed)	N
955	chr1	48549312	48549313	rs12036718	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	1p33	Intergenic	rs12036718-T	0.103	8E-6	(Trend model)	1.68	[0.95-2.99]	Illumina [508761]	N
955	chr1	48622181	48622182	rs214220	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	1p33	SKINTL, SLC5A9	rs214220-C	0.5	1E-6				Affymetrix [432921]	N
955	chr1	48627453	48627454	rs41287894	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	1p33	SKINT1L	rs41287894-T	NR	3E-6	(males)	0.45	[0.25-0.65] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
956	chr1	48649489	48649490	rs10888599	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p33	SPATA6	rs10888599-?	NR	3E-7	(aminoadipic acid)	0.23805691	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
956	chr1	48672112	48672113	rs1740109	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p33	SPATA6	rs1740109-?	NR	5E-6	(SM 18:0)	0.15361744	[0.088-0.219] unit decrease	Affymetrix [at least 2500000] (imputed)	N
956	chr1	48685434	48685435	rs926979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p33		rs926979-C	NR	3E-12		0.0137	[0.0098-0.0176] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
956	chr1	48685434	48685435	rs926979	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p33	NR	rs926979-T	0.33	2E-12		0.0138	[0.0099-0.0177] unit decrease	NR [NR]	N
957	chr1	48764511	48764512	rs146976708	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	1p33		rs146976708-?	NR	4E-7		28.2301	[26.94-29.52]	NR [666300]	N
957	chr1	48784080	48784081	rs12733028	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p33	SLC5A9	rs12733028-?	NR	9E-8	(aminoadipic acid)	0.24019045	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
957	chr1	48824406	48824407	rs1877720	31477735	Liu X	2019-09-02	Nat Commun	Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration.	Early spontaneous preterm birth	1,139 European ancestry cases, 60,148 European ancestry controls	107 Finnish ancestry infant cases, 865 Finnish ancestry infant controls	1p33	SPATA6	rs1877720-T	0.046	4E-7		1.55	[1.31-1.84]	Illumina [7588467] (imputed)	N
957	chr1	48875668	48875669	rs140254647	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p33	SLC5A9	rs140254647-C	0.22	4E-24	(mannose)	0.803	[0.65-0.96] unit increase	Illumina [7750367] (imputed)	N
957	chr1	48887118	48887119	rs7553443	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p33	AGBL4	rs7553443-?	NR	9E-8	(aminoadipic acid)	0.23994917	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr1	48967001	48967002	rs12098127	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p33	AGBL4	rs12098127-?	NR	6E-6	(SM 18:0)	0.20639874	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr1	48973812	48973813	rs4926734	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p33	NR	rs4926734-T	0.056	9E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
959	chr1	49037700	49037701	rs1539526	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p33	AGBL4	rs1539526-?		6E-6				Illumina [4322238] (imputed)	N
959	chr1	49052422	49052423	rs11579440	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	1p33	AGBL4	rs11579440-T	0.8483	3E-10		0.2674	[0.18-0.35] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
959	chr1	49089196	49089197	rs320035	27671213	Petros Z	2016-09-26	BMC Genomics	Genome-wide association and replication study of anti-tuberculosis drugs-induced liver toxicity.	Liver injury in anti-tuberculosis drug treatment	48 Ethiopian cases with liver injury, 354 Ethiopian cases without liver injury	27 Ethiopian cases with liver injury, 217 Ethiopian cases without liver injury	1p33	AGBL4	rs320035-G	NR	5E-6		2.3	[1.6-3.3]	Illumina [660206]	N
959	chr1	49116893	49116894	rs319991	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	1p33	NR	rs319991-?	NR	2E-7		0.0118	[0.0073-0.0163] unit increase	Illumina [~ 7800000] (imputed)	N
960	chr1	49162947	49162948	rs76924002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p33		rs76924002-?	NR	3E-9				NR [~ 8900000] (imputed)	N
960	chr1	49177149	49177150	rs186478	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	1p33	NR	rs186478-?		9E-6		0.21	unit increase	Illumina [1211988] (imputed)	N
960	chr1	49231260	49231261	rs7553454	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs7553454-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
961	chr1	49309763	49309764	rs11590635	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p33	AGBL4	rs11590635-A	0.024	4E-9		1.16	[1.10-1.21]	Illumina [34740186] (imputed)	N
961	chr1	49339601	49339602	rs12747763	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p33	NR	rs12747763-T	NR	1E-8		5.679	z score increase	Affymetrix [10847151] (imputed)	N
961	chr1	49396988	49396989	rs1343432	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p33	AGBL4	rs1343432-C		2E-8		1.023	[NR]	Affymetrix [up to 79000000] (imputed)	N
962	chr1	49438004	49438005	rs3127553	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p33	NR	rs3127553-G	NR	3E-16		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
962	chr1	49438004	49438005	rs3127553	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p33	NR	rs3127553-A	0.633664002396075	7E-12		0.019238222	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
962	chr1	49438004	49438005	rs3127553	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p33	AGBL4	rs3127553-A	0.6328	3E-7	(EA, women)	0.0236	[0.015-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
962	chr1	49438004	49438005	rs3127553	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p33	AGBL4	rs3127553-A	0.6328	2E-10	(EA)	0.0226	[0.016-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
962	chr1	49486980	49486981	rs2224976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs2224976-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
962	chr1	49490427	49490428	rs1079130	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs1079130-?	NR	9E-7		0.0086086	[0.0052-0.012] unit increase	Affymetrix [805426] (imputed)	N
962	chr1	49502301	49502302	rs4926784	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p33		rs4926784-T	0.43	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
962	chr1	49528402	49528403	rs17105472	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p33		rs17105472-?	NR	2E-11		0.03	unit decrease	NR [NR]	N
963	chr1	49589846	49589847	rs657452	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p33	NR	rs657452-A	NR	5E-16		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
963	chr1	49589846	49589847	rs657452	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p33	AGBL4	rs657452-G	0.63	2E-15		0.019	[0.015-0.023] unit decrease	Illumina [6108953] (imputed)	N
963	chr1	49589846	49589847	rs657452	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs657452-A	0.4068	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
963	chr1	49589846	49589847	rs657452	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs657452-A	0.4068	3E-6		0.0167	[0.0096-0.0238] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
963	chr1	49589846	49589847	rs657452	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p33	NR	rs657452-A	0.391843529117944	2E-11		0.018655034	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
963	chr1	49589846	49589847	rs657452	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	AGBL4	rs657452-A	0.397	2E-13		0.023	[0.017-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr1	49589846	49589847	rs657452	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	AGBL4	rs657452-A	0.394	5E-13	(EA)	0.023	[0.017-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr1	49589846	49589847	rs657452	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	AGBL4	rs657452-A	0.394	3E-7	(EA, men)	0.022	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr1	49589846	49589847	rs657452	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	AGBL4	rs657452-A	0.394	2E-8	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
963	chr1	49613663	49613664	rs72683001	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs72683001-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
963	chr1	49642697	49642698	rs354168	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs354168-?	NR	1E-6		0.0085554	[0.0051-0.012] unit increase	Affymetrix [805426] (imputed)	N
964	chr1	49710263	49710264	rs12121950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p33		rs12121950-T	NR	6E-20		0.0184	[0.014-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
964	chr1	49710263	49710264	rs12121950	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p33	NA	rs12121950-T	0.3355	7E-24		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
964	chr1	49710263	49710264	rs12121950	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p33	NA	rs12121950-T	0.3355	7E-24		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
964	chr1	49728311	49728311	rs200524885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p33		rs200524885-TA	NR	1E-18		0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
964	chr1	49771107	49771108	rs6702977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs6702977-?	NR	7E-8		0.009493	[0.006-0.0129] unit increase	Affymetrix [805426] (imputed)	N
964	chr1	49803102	49803103	rs35466861	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p33	NR	rs35466861-A	0.9081	2E-9		0.043263137	[0.029-0.057] unit increase	NR [NR]	N
965	chr1	49879121	49879122	rs6693294	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p33		rs6693294-A	0.31	3E-11				NR [NR] (imputed)	N
965	chr1	49879121	49879122	rs6693294	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p33		rs6693294-A	0.31	3E-18		0.014	% increase	NR [NR] (imputed)	N
965	chr1	49907572	49907573	rs147247472	31462767	Sun Y	2019-08-28	Mol Psychiatry	Identification of novel risk loci with shared effects on alcoholism, heroin, and methamphetamine dependence.	Alcohol dependence or heroin dependence or methamphetamine dependence	521 Han Chinese ancestry alcohol dependence cases, 1,026 Han Chinese ancestry heroin dependence cases, 1,749 Han Chinese ancestry methamphetamine dependence cases, 2,859 Han Chinese ancestry controls	146 Han Chinese ancestry alcohol dependence cases, 1,045 Han Chinese ancestry heroin dependence cases, 763 Han Chinese ancestry methamphetamine dependence cases, 1,904 Han Chinese ancestry controls	1p33	AGBL4	rs147247472-A	0.0174	3E-12		0.348	[0.25-0.45] unit increase	Illumina [383065] (imputed)	N
965	chr1	49928488	49928489	rs946106	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p33	NR	rs946106-?	NR	7E-9		1.055799	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
965	chr1	49928488	49928489	rs946106	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p33	NA	rs946106-T	0.7664	3E-17		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
965	chr1	49928488	49928489	rs946106	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	1p33	NR	rs946106-T	0.7664	3E-17		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
966	chr1	49957135	49957136	rs4926814	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs4926814-?	NR	5E-8		0.0096234	[0.0062-0.0131] unit increase	Affymetrix [805426] (imputed)	N
966	chr1	49963472	49963473	rs1591726	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p33	NR	rs1591726-T	0.3196	4E-17		0.022329483	[0.017-0.028] unit increase	Affymetrix [10549349] (imputed)	N
966	chr1	49977964	49977965	rs1933270	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p33		rs1933270-T	0.364	2E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
966	chr1	49996958	49996959	rs1167311	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p33	AGBL4	rs1167311-G	0.318742	1E-16		0.0122534	[0.0094-0.0152] unit increase	Affymetrix [12370749]	N
966	chr1	49996958	49996959	rs1167311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p33		rs1167311-?	NR	1E-19				NR [~ 8900000] (imputed)	N
966	chr1	50056541	50056542	rs61783608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p33	NR	rs61783608-A	NR	3E-10		0.0547	[0.038-0.072] unit increase	Affymetrix [9000000] (imputed)	N
966	chr1	50058315	50058316	rs182937332	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1p33	NR	rs182937332-A	0.9847	4E-7		0.8158	[0.5-1.13] unit decrease	Illumina [NR] (imputed)	N
967	chr1	50100114	50100115	rs6665841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs6665841-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
967	chr1	50100114	50100115	rs6665841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p33		rs6665841-?	NR	2E-11				NR [~ 8900000] (imputed)	N
967	chr1	50110069	50110070	rs1578800	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs1578800-?	NR	9E-8		0.0094464	[0.006-0.0129] unit increase	Affymetrix [805426] (imputed)	N
968	chr1	50274165	50274166	rs12757214	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p33	NR	rs12757214-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
968	chr1	50290100	50290101	rs4926831	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs4926831-?	NR	7E-8		0.0094827	[0.006-0.0129] unit increase	Affymetrix [805426] (imputed)	N
968	chr1	50293420	50293421	rs12128108	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	1p33	AGBL4	rs12128108-T	0.23	3E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
968	chr1	50293420	50293421	rs12128108	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p33	NA	rs12128108-T	0.2333	3E-22		0.0188	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
968	chr1	50312199	50312200	rs4582848	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p33	NR	rs4582848-A	NR	3E-10		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
968	chr1	50312199	50312200	rs4582848	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p33	NR	rs4582848-A	0.329770575857346	8E-10		0.0196049	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
969	chr1	50379590	50379591	rs56184305	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p33	NR	rs56184305-A	0.221	3E-23		0.0129137	[0.01-0.015] unit increase	NR [9732723] (imputed)	N
969	chr1	50416829	50416830	rs11205668	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	1p33		rs11205668-?	NR	2E-8				NR [7857346] (imputed)	N
969	chr1	50416829	50416830	rs11205668	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	AGBL4	rs11205668-?	NR	3E-8		0.0097948	[0.0063-0.0132] unit increase	Affymetrix [805426] (imputed)	N
970	chr1	50504099	50504100	rs35596618	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1p33	ELAVL4	rs35596618-A	0.9093	3E-6		0.0124	[0.0073-0.0175] unit increase	Affymetrix [~ 7740000] (imputed)	N
970	chr1	50543815	50543816	rs6685278	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p33	NR	rs6685278-?	NR	8E-8		0.0094725	[0.006-0.0129] unit increase	Affymetrix [805426] (imputed)	N
970	chr1	50559161	50559162	rs11579246	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p33	NR	rs11579246-A	0.9086	1E-10		0.046239153	[0.032-0.06] unit increase	NR [NR]	N
970	chr1	50559161	50559162	rs11579246	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p33	NR	rs11579246-A	0.9067	9E-18		1.033	[1.025-1.04]	NR [8098588] (imputed)	N
970	chr1	50559819	50559820	rs11583200	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1p33	NR	rs11583200-?	NR	3E-6		0.03188903	[0.019-0.045] unit decrease	Illumina [32062178] (imputed)	N
970	chr1	50559819	50559820	rs11583200	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p33	NR	rs11583200-C	NR	4E-13		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
970	chr1	50559819	50559820	rs11583200	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs11583200-T	0.5794	9E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
970	chr1	50559819	50559820	rs11583200	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs11583200-T	0.5794	9E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
970	chr1	50559819	50559820	rs11583200	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs11583200-T	0.5794	3E-6		0.0161	[0.0094-0.0228] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
970	chr1	50559819	50559820	rs11583200	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p33	ELAVL4	rs11583200-T	0.5794	2E-6	(women)	0.0222	[0.013-0.031] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
970	chr1	50559819	50559820	rs11583200	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	1p33	ELAVL4	rs11583200-C	NR	4E-6	(additive model)	0.019	[0.011-0.027] unit increase	NR [9288881] (imputed)	N
970	chr1	50559819	50559820	rs11583200	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p33	NR	rs11583200-T	0.606864715540726	3E-8		0.015170207	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
970	chr1	50559819	50559820	rs11583200	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	ELAVL4	rs11583200-C	0.407	6E-9		0.017	[0.012-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
970	chr1	50559819	50559820	rs11583200	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p33	ELAVL4	rs11583200-C	0.396	1E-8	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
970	chr1	50562812	50562813	rs12733544	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p33	NR	rs12733544-A	0.322	7E-11		0.0152603	[0.011-0.02] unit increase	NR [9732723] (imputed)	N
970	chr1	50572095	50572096	rs12138061	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p33	ELAVL4	rs12138061-A	NR	1E-7		1.059	[1.04-1.08]	Illumina [6627481] (imputed)	N
970	chr1	50572095	50572096	rs12138061	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p33	intergenic	rs12138061-A	NR	1E-7		1.057	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
970	chr1	50572095	50572096	rs12138061	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p33	NR	rs12138061-A	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
970	chr1	50579236	50579237	rs9436888	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p33	NR	rs9436888-C	0.229	1E-13		0.0129134	[0.0095-0.0163] unit decrease	NR [9732723] (imputed)	N
970	chr1	50587881	50587882	rs7515768	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p33	NR	rs7515768-T	0.225	1E-9		0.0112335	[0.0076-0.0148] unit increase	NR [9732723] (imputed)	N
971	chr1	50602494	50602495	rs6588376	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p33		rs6588376-G	0.793	1E-16		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
971	chr1	50603994	50603995	rs12022778	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p33	ELAVL4	rs12022778-A	0.7884	1E-10		0.015913688	[0.011-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
971	chr1	50603994	50603995	rs12022778	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p33	NR	rs12022778-C	0.202	3E-17		0.0268248	[0.021-0.033] unit increase	NR [~ 10000000] (imputed)	N
971	chr1	50607028	50607029	rs12092053	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p33	ELAVL4	rs12092053-C	0.0040	6E-6	(IGFBP-1 )	0.02	[NR] ng/mL increase	Illumina [899892]	N
971	chr1	50613757	50613758	rs76818094	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p33	NR	rs76818094-T	0.01	3E-6		1.66	[1.44-1.88]	Illumina [8468885] (imputed)	N
971	chr1	50711960	50711961	rs7517344	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	1p32.3	ELAVL4	rs7517344-A	0.17	2E-10		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
972	chr1	50806454	50806455	rs115910760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	RP11-183G22.1	rs115910760-C	NR	6E-10		0.0402951	[0.028-0.053] unit increase	Affymetrix [323123] (imputed)	N
972	chr1	50809303	50809304	rs112273742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p32.3	NR	rs112273742-G	NR	1E-17		0.0619	[0.048-0.076] unit increase	Affymetrix [9000000] (imputed)	N
972	chr1	50825444	50825445	rs4086663	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p32.3	NR	rs4086663-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
972	chr1	50830213	50830214	rs2653889	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs2653889-?	NR	3E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
972	chr1	50838543	50838544	rs74677340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.3	Intergenic	rs74677340-T	0.9564	2E-9	(MTAG)	0.0244	[0.016-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
972	chr1	50839739	50839740	rs2356864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p32.3		rs2356864-A	NR	2E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
972	chr1	50839739	50839740	rs2356864	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p32.3	DMRTA2	rs2356864-G	0.478969	8E-12		0.00267483	[0.0019-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
972	chr1	50839739	50839740	rs2356864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p32.3	NR	rs2356864-A	NR	2E-10		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
972	chr1	50839739	50839740	rs2356864	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p32.3	DMRTA2	rs2356864-G	0.479203	9E-10		0.00857973	[0.0058-0.0113] unit decrease	Affymetrix [12370749]	N
972	chr1	50839739	50839740	rs2356864	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p32.3	DMRTA2	rs2356864-A	0.568	2E-9		0.0202	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
972	chr1	50839739	50839740	rs2356864	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p32.3	DMRTA2	rs2356864-A	0.5246	2E-7		0.019976	[0.012-0.027] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
972	chr1	50844196	50844197	rs114767964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	HMGB1P45	rs114767964-T	NR	2E-10		0.0496332	[0.034-0.065] unit increase	Affymetrix [323123] (imputed)	N
972	chr1	50846032	50846053	rs140850326	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p32.3		rs140850326-CAAAGGGCAAGATCTCCTTTTT	NR	3E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
972	chr1	50846032	50846053	rs140850326	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p32.3	intergenic	rs140850326-CAAAGGGCAAGATCTCCTTTTT	0.51	4E-8	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
973	chr1	50861070	50861071	rs11587399	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p32.3		rs11587399-A	0.785	8E-14		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
973	chr1	50861070	50861071	rs11587399	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p32.3	NR	rs11587399-T	0.221	2E-12		0.0091438	[0.0066-0.0117] unit decrease	NR [9732723] (imputed)	N
973	chr1	50861070	50861071	rs11587399	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p32.3	NR	rs11587399-T	0.221	7E-9	(Conditioned on chr1:50603995)	0.017804557	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
973	chr1	50861885	50861886	rs10888687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	HMGB1P45	rs10888687-G	NR	2E-10		0.024059	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
973	chr1	50889254	50889255	rs1278530	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	intergenic	rs1278530-A	0.5078	8E-12		0.016	[0.011-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
973	chr1	50890633	50890634	rs1278529	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	1p32.3		rs1278529-?	NR	8E-9				NR [9705931] (imputed)	N
973	chr1	50891116	50891117	rs72896994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs72896994-C	0.904205	2E-8		0.0374698	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
973	chr1	50891212	50891213	rs1278526	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p32.3	NR	rs1278526-A	0.524452	2E-12		0.0193434	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
973	chr1	50897341	50897342	rs1278519	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	1p32.3		rs1278519-A	NR	4E-10		0.0344	[0.024-0.045] unit decrease	Affymetrix [6193476] (imputed)	N
973	chr1	50897341	50897342	rs1278519	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	1p32.3	NR	rs1278519-C	0.52	4E-6				Illumina [6479975] (imputed)	N
973	chr1	50901367	50901368	rs1278515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p32.3		rs1278515-C	NR	6E-15		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
973	chr1	50907437	50907438	rs4381241	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	1p32.3	FAF1	rs4381241-C	0.44	3E-10		1.11	1.07-1.15	Illumina [7437091] (imputed)	N
973	chr1	50909984	50909985	rs17106184	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1p32.3	FAF1	rs17106184-A	0.0964	6E-7	(EA)	0.0897	[0.055-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
973	chr1	50909984	50909985	rs17106184	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1p32.3	FAF1	rs17106184-A	0.0964	1E-8		0.08	[0.053-0.107] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
973	chr1	50909984	50909985	rs17106184	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	1p32.3	FAF1	rs17106184-G		4E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [2500000] (imputed)	N
973	chr1	50913387	50913388	rs80315981	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	1p32.3	FAF1	rs80315981-A	0.03	3E-6		0.3	[0.18-0.42] unit decrease	Illumina [NR] (imputed)	N
973	chr1	50937847	50937848	rs3827730	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	1p32.3	FAF1	rs3827730-?	NR	4E-6		1.72	[1.36-2.16]	Illumina [876476]	N
973	chr1	50954127	50954128	rs3789577	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.3	FAF1	rs3789577-A	0.0866	5E-10		0.2792	[0.19-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
973	chr1	50960520	50960521	rs10888690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p32.3		rs10888690-?	NR	6E-35				NR [~ 8900000] (imputed)	N
973	chr1	50960520	50960521	rs10888690	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p32.3	NR	rs10888690-C	0.406721	4E-41		0.0415985	[0.036-0.048] unit decrease	NR [19129689] (imputed)	N
973	chr1	50960520	50960521	rs10888690	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p32.3	DMRTA2	rs10888690-T	NR	6E-13		0.102471	[0.075-0.13] unit decrease	Affymetrix [27512692] (imputed)	N
973	chr1	50960520	50960521	rs10888690	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p32.3	CDKN2C, DMRTA2, ELAVL4, FAF1	rs10888690-C	NR	9E-12		0.042772	NR unit decrease	NR [NR] (imputed)	N
973	chr1	50968096	50968097	rs10788928	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.3		rs10788928-A	0.46	1E-15		7.99	z score increase	Affymetrix [9061022] (imputed)	N
973	chr1	50968096	50968097	rs10788928	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p32.3	NR	rs10788928-A	0.4688	6E-16				NR [9056863] (imputed)	N
973	chr1	50970474	50970475	rs10493149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p32.3	FAF1	rs10493149-G	NR	1E-12		0.0345782	[0.025-0.044] unit increase	Affymetrix [321016] (imputed)	N
973	chr1	50975226	50975227	rs116626164	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p32.3	FAF1	rs116626164-A	0.0233	1E-8		0.0177	[0.012-0.024] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
973	chr1	50984961	50984962	rs12096443	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p32.3		rs12096443-T	0.42	1E-23		10.01	z score increase	Affymetrix [9061022] (imputed)	N
973	chr1	50984961	50984962	rs12096443	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p32.3	NR	rs12096443-T	0.4299	1E-17				NR [9056863] (imputed)	N
973	chr1	50984961	50984962	rs12096443	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p32.3	FAF1	rs12096443-C	0.565442	4E-13		0.00378319	[0.0028-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
974	chr1	50991451	50991452	rs56202902	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	1p32.3	DMRTA2, FAF1, CDKN2C, RNF11	rs56202902-C	0.021	2E-11		1.22	[1.14-1.31]	Illumina [8952551] (imputed)	N
974	chr1	50991472	50991473	rs10888692	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1p32.3	FAF1	rs10888692-C	0.4301	5E-9		0.0143	[0.0094-0.0192] unit decrease	NR [NR]	N
974	chr1	51016602	51016603	rs10888696	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	CROCC, MFAP2, ATP13A2, SDHB	rs10888696-?		2E-20				NR [7428630] (imputed)	N
974	chr1	51016602	51016603	rs10888696	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	1p32.3	DMRTA2, FAF1, CDKN2C	rs10888696-A	NR	4E-10		5.22	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
974	chr1	51021866	51021867	rs147696085	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.3	FAF1	rs147696085-G		4E-9		0.355	unit increase	Affymetrix [at least 2696785] (imputed)	N
974	chr1	51021866	51021867	rs147696085	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.3	FAF1	rs147696085-G		2E-7	(EA)	0.341	unit increase	Affymetrix [at least 2696785] (imputed)	N
974	chr1	51021866	51021867	rs147696085	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p32.3	FAF1	rs147696085-G		2E-11		0.29	unit increase	Affymetrix [at least 2696785] (imputed)	N
974	chr1	51029386	51029387	rs3789584	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p32.3		rs3789584-C	0.43	7E-45		14.06	z score increase	Affymetrix [9061022] (imputed)	N
974	chr1	51031957	51031958	rs61781020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.3	Intergenic	rs61781020-A	0.0494	3E-10	(MTAG)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
974	chr1	51031957	51031958	rs61781020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p32.3	Intergenic	rs61781020-G	0.9506	7E-9		0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
974	chr1	51062975	51062976	rs3850873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	DMRTA2, FAF1, CDKN2C	rs3850873-?		6E-20				NR [7428630] (imputed)	N
974	chr1	51067405	51067405	rs150584036	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p32.3	NR	rs150584036-TAC	0.151011	1E-12		0.012513	[0.0091-0.0159] unit increase	Affymetrix [16585854] (imputed)	N
974	chr1	51067405	51067405	rs150584036	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p32.3	NR	rs150584036-TAC	0.151011	9E-6		0.00925374	[0.0053-0.0132] unit increase	Affymetrix [16585866] (imputed)	N
974	chr1	51080191	51080191	rs141811210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p32.3		rs141811210-GTAA	NR	2E-19		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
974	chr1	51080191	51080191	rs141811210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p32.3	NR	rs141811210-GTAA	0.429805	5E-9		0.00606868	[0.0038-0.0084] unit increase	Affymetrix [16582621] (imputed)	N
974	chr1	51080191	51080191	rs141811210	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p32.3	NR	rs141811210-GTAA	0.429805	1E-8		0.00673604	[0.0043-0.0092] unit increase	Affymetrix [16582614] (imputed)	N
974	chr1	51086336	51086337	rs10888700	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p32.3	NR	rs10888700-T	0.57	3E-21		0.0173	[0.014-0.021] unit increase	NR [NR]	N
974	chr1	51087836	51087836	rs529143892	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p32.3	NR	rs529143892-C	0.644482	1E-12		0.0190962	[0.014-0.024] unit increase	Affymetrix [16585745] (imputed)	N
974	chr1	51103267	51103268	rs12031188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p32.3		rs12031188-C	0.803567822	2E-11		0.07926439	[0.056-0.103] unit increase	Illumina [13429769] (imputed)	N
974	chr1	51103267	51103268	rs12031188	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	1p32.3	NR	rs12031188-C	0.7953	2E-11		0.0802	[0.057-0.104] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
974	chr1	51103267	51103268	rs12031188	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	1p32.3		rs12031188-C	0.797394309	3E-10		1.0717143	[1.048861552-1.095064828]	Illumina [8919992] (imputed)	N
974	chr1	51103267	51103268	rs12031188	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	1p32.3	FAF1	rs12031188-C	0.8	3E-11		1.08	1.06-1.11	Illumina [12557761] (imputed)	N
974	chr1	51109268	51109269	rs12031920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	FAF1	rs12031920-A	NR	5E-8		0.0168906	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
974	chr1	51111506	51111506	rs139500832	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs139500832-G	0.633362	4E-9		0.024199	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
975	chr1	51118252	51118253	rs10788930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	FAF1	rs10788930-T	NR	1E-12		0.0301678	[0.022-0.038] unit increase	Affymetrix [323123] (imputed)	N
975	chr1	51127523	51127524	rs12098132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs12098132-A	0.0881698	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
975	chr1	51159346	51159347	rs7515597	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs7515597-?	NR	4E-9	(left amygdala)			NR [9227495] (imputed)	N
975	chr1	51173602	51173603	rs12086130	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p32.3	FAF1	rs12086130-T	0.0893	3E-9	(EA)	0.0375	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr1	51173602	51173603	rs12086130	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p32.3	FAF1	rs12086130-T	0.0893	2E-9	(EA,men)	0.0553	[0.037-0.073] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr1	51173602	51173603	rs12086130	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p32.3	FAF1	rs12086130-T	0.0904	4E-6	(EA,women)	0.0374	[0.022-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr1	51173602	51173603	rs12086130	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p32.3	FAF1	rs12086130-T	0.0904	3E-9	(EA)	0.0377	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr1	51179310	51179311	rs114745413	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs114745413-?	NR	3E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
975	chr1	51183256	51183257	rs11205761	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1p32.3	CROCC, MFAP2, ATP13A2, SDHB	rs11205761-?		2E-11				NR [7428630] (imputed)	N
975	chr1	51183256	51183257	rs11205761	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p32.3	CROCC, MFAP2, ATP13A2, SDHB	rs11205761-?		7E-11				NR [7428630] (imputed)	N
975	chr1	51189555	51189556	rs35072907	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	1p32.3	FAF1	rs35072907-G	NR	2E-8		0.02	[0.012-0.028] unit increase	NR [NR] (imputed)	N
975	chr1	51189555	51189556	rs35072907	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	1p32.3	FAF1	rs35072907-C	NR	1E-7	(Japanese)	1.11071	[1.06843-1.15466]	Illumina [7521072] (imputed)	N
975	chr1	51191934	51191935	rs11205766	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1p32.3	FAF1	rs11205766-T	0.903	7E-15		1.09	[1.07-1.12]	Affymetrix, Illumina [11800000] (imputed)	N
975	chr1	51209147	51209148	rs79090772	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p32.3	NR	rs79090772-C	0.0971	1E-28		0.0728	[0.06-0.086] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
975	chr1	51216294	51216295	rs200229291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p32.3	FAF1	rs200229291-C	0.195616	8E-10		0.01860273	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr1	51216294	51216295	rs200229291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p32.3	FAF1	rs200229291-C	0.195624	2E-12		0.021336364	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
975	chr1	51216822	51216823	rs201412517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p32.3	FAF1	rs201412517-T	0.366197	2E-10		0.014783742	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr1	51218694	51218695	rs28787109	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs28787109-?	NR	2E-8	(right amygdala)			NR [9227495] (imputed)	N
975	chr1	51220016	51220017	rs72690486	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p32.3	EPS15	rs72690486-T	0.9751	1E-25		2.3075	[1.88-2.74] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
975	chr1	51220679	51220680	rs111352324	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.3	NR	rs111352324-?	NR	8E-8	(female)	0.22618	[0.14-0.31] unit increase	Affymetrix [7794483] (imputed)	N
975	chr1	51220679	51220680	rs111352324	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.3	NR	rs111352324-?	NR	7E-15		0.29966	[0.22-0.38] unit increase	Affymetrix [7794483] (imputed)	N
975	chr1	51220679	51220680	rs111352324	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.3	NR	rs111352324-?	NR	5E-9	(male)	0.35743	[0.24-0.48] unit increase	Affymetrix [7794483] (imputed)	N
975	chr1	51227063	51227064	rs12097606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p32.3		rs12097606-T	NR	3E-10		0.0198	[0.014-0.026] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
975	chr1	51243373	51243374	rs1416685	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p32.3	FAF1	rs1416685-C	0.4053	1E-37		0.0328	[0.028-0.038] unit increase	Affymetrix [19819130] (imputed)	N
975	chr1	51243373	51243374	rs1416685	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p32.3	FAF1	rs1416685-C	0.4053	6E-17		0.0202	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
975	chr1	51243373	51243374	rs1416685	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p32.3	FAF1	rs1416685-C	0.4053	6E-12		0.0162	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
975	chr1	51243373	51243374	rs1416685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p32.3		rs1416685-?	NR	9E-16				NR [~ 8900000] (imputed)	N
975	chr1	51248315	51248316	rs12074850	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p32.3	FAF1	rs12074850-A	0.9102	3E-33		0.0393	[0.033-0.046] unit decrease	Affymetrix [18391927] (imputed)	N
976	chr1	51256090	51256091	rs58432198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1p32.3		rs58432198-T	NR	9E-11		0.0806	[0.056-0.105] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
976	chr1	51256090	51256091	rs58432198	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs58432198-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
976	chr1	51256090	51256091	rs58432198	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	1p32.3	FAF1	rs58432198-C	0.91	3E-9		1.098901	[1.06-1.14]	Illumina [12557761] (imputed)	N
976	chr1	51256090	51256091	rs58432198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	1p32.3		rs58432198-?	NR	2E-7				NR [~ 8900000] (imputed)	N
976	chr1	51256090	51256091	rs58432198	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p32.3	FAF1	rs58432198-C	0.8811	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
976	chr1	51266522	51266523	rs3789588	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	1p32.3	FAF1	rs3789588-A	0.0964	3E-9				Affymetrix, Illumina [2331072] (imputed)	N
976	chr1	51273991	51273992	rs572377290	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs572377290-?	NR	3E-6		4.647	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
976	chr1	51283509	51283510	rs58795848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p32.3		rs58795848-G	0.090492	1E-19		0.0315209	[0.025-0.038] unit increase	Illumina [13479295] (imputed)	N
976	chr1	51285460	51285461	rs1972100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p32.3	FAF1	rs1972100-G	0.434055	2E-11		0.015443662	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
976	chr1	51285460	51285461	rs1972100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs1972100-G	0.354895	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
976	chr1	51285460	51285461	rs1972100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p32.3	NR	rs1972100-G	0.433368	2E-14		0.014881	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
976	chr1	51298204	51298205	rs138364069	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke (large artery atherosclerosis)	401 European ancestry cases, 17,164 European ancestry controls, 23 African American ancestry cases, 352 African American ancestry controls, 257 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	NA	1p32.3	FAF1	rs138364069-T	NR	7E-9		3.57	[2.38-5.56]	Illumina [up to 13439215] (imputed)	N
976	chr1	51322983	51322983	rs35934575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	FAF1	rs35934575-CT	NR	1E-9		0.0236694	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
976	chr1	51328806	51328807	rs114540602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	FAF1	rs114540602-A	NR	1E-15		0.0642417	[0.049-0.08] unit increase	Affymetrix [323123] (imputed)	N
976	chr1	51341665	51341666	rs7545860	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy or supraventricular ectopy (pleiotropy)	1,618 European ancestry supraventricular ectopy cases, 652 African ancestry supraventricular ectopy cases, 354 Hispanic/Latino ancestry supraventricular ectopy cases, 2,468 European ancestry ventricular ectopy cases, 481 African ancestry ventricular ectopy cases, 168 Hispanic/Latino ancestry ventricular ectopy cases, at least 19,586 European ancestry controls, at least 8,141 African ancestry controls, at least 10,663 Hispanic/Latino ancestry controls.	NA	1p32.3	CDKN2C, FAF1	rs7545860-A	0.98	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
976	chr1	51341665	51341666	rs7545860	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy	2,468 European ancestry cases, 21,204 European ancestry controls, 481 African ancestry cases, 8,793 African ancestry controls, 168 Hispanic/Latino ancestry cases, 11,017 Hispanic/Latino ancestry controls	NA	1p32.3	FAF1, CDKN2C	rs7545860-A	0.98	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
976	chr1	51348272	51348276	rs140945602	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p32.3	NR	rs140945602-T	0.4877	7E-8	(EA)	0.0359	[0.023-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
976	chr1	51349662	51349663	rs149288352	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	1p32.3	FAF1	rs149288352-A	0.025	4E-8		1.515	[0.98-2.05] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
976	chr1	51350967	51350967	rs147647466	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs147647466-?	NR	2E-10	(right amygdala)			NR [9227495] (imputed)	N
976	chr1	51351845	51351846	rs72904737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p32.3	FAF1	rs72904737-G	0.912586	1E-14		0.0271857	[0.02-0.034] unit increase	Affymetrix [NR] (imputed)	N
976	chr1	51353067	51353068	rs138422027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p32.3		rs138422027-A	NR	3E-12		0.0248	[0.018-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
976	chr1	51353719	51353720	rs144432213	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs144432213-C	NR	6E-9		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
976	chr1	51353719	51353720	rs144432213	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs144432213-C	0.909	2E-6	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
976	chr1	51367419	51367420	rs72904749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs72904749-?	NR	6E-60				NR [~ 8900000] (imputed)	N
976	chr1	51374607	51374608	rs60244988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p32.3		rs60244988-?	NR	4E-10				NR [~ 8900000] (imputed)	N
977	chr1	51391568	51391569	rs12085666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p32.3		rs12085666-G	NR	7E-52		0.0337	[0.029-0.038] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
977	chr1	51391844	51391845	rs12095997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p32.3	NR	rs12095997-T	NR	8E-11		0.0269	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr1	51391844	51391845	rs12095997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p32.3	NR	rs12095997-T	NR	7E-11		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
977	chr1	51391844	51391845	rs12095997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p32.3	NR	rs12095997-T	NR	4E-19		0.0379	[0.03-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr1	51391844	51391845	rs12095997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs12095997-T	NR	1E-9		0.0253	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr1	51397564	51397564	rs775103516	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	1p32.3	FAF1	rs775103516-?	NR	3E-13		0.0657	NR % decrease	Affymetrix [9390170] (imputed)	N
977	chr1	51418377	51418378	rs185178768	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	1p32.3	FAF1	rs185178768-G	0.9869	5E-9		0.0205	[0.014-0.027] unit increase	Affymetrix [~ 9500000] (imputed)	N
977	chr1	51418377	51418378	rs185178768	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	1p32.3	FAF1	rs185178768-G	0.9869	1E-6		0.112	[0.067-0.157] unit increase	Affymetrix [~ 9500000] (imputed)	N
977	chr1	51418471	51418472	rs6703250	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	1p32.3		rs6703250-?	NR	1E-7		0.039	[0.025-0.053] unit decrease	Affymetrix [9906178] (imputed)	N
977	chr1	51418471	51418472	rs6703250	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	1p32.3		rs6703250-?	NR	5E-10		0.054	[0.036-0.072] unit decrease	Affymetrix [9906178] (imputed)	N
977	chr1	51423043	51423050	rs140866275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	1p32.3		rs140866275-A	NR	2E-8		0.0563	[0.037-0.076] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
977	chr1	51428412	51428413	rs78181360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	CDKN2C	rs78181360-G	NR	4E-10		0.0447507	[0.031-0.059] unit increase	Affymetrix [323123] (imputed)	N
977	chr1	51433686	51433687	rs3176447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1p32.3		rs3176447-A	0.157989	2E-12		0.0282749	[0.02-0.036] unit increase	Illumina [13479924] (imputed)	N
977	chr1	51433686	51433687	rs3176447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p32.3		rs3176447-A	NR	1E-21		0.0329	[0.026-0.04] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
977	chr1	51433686	51433687	rs3176447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1p32.3		rs3176447-A	NR	3E-8		0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
977	chr1	51437246	51437247	rs3176459	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	1p32.3	CDKN2C	rs3176459-G	NR	8E-7	(male)	0.9727	[0.96-0.98]	Affymetrix [9869154] (imputed)	N
977	chr1	51437246	51437247	rs3176459	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	1p32.3	CDKN2C	rs3176459-G	NR	8E-10		0.98	[0.97-0.99]	Affymetrix [9869154] (imputed)	N
977	chr1	51437246	51437247	rs3176459	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	1p32.3	CDKN2C	rs3176459-A	0.666	5E-11		1.07019	[1.048648-1.092174]	Affymetrix [NR] (imputed)	N
977	chr1	51437246	51437247	rs3176459	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs3176459-?	NR	2E-10	(left amygdala)			NR [9227495] (imputed)	N
977	chr1	51438364	51438365	rs3176466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	CDKN2C	rs3176466-T	NR	1E-23		0.0539172	[0.043-0.064] unit increase	Affymetrix [323123] (imputed)	N
977	chr1	51438364	51438365	rs3176466	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p32.3	NR	rs3176466-C	0.9033	9E-16		0.0642	[0.049-0.08] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
977	chr1	51438880	51438881	rs3176468	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	1p32.3	CDKN2C	rs3176468-C	0.204	1E-12	(AA)	0.058	[0.042-0.074] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
977	chr1	51438880	51438881	rs3176468	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	1p32.3	CDKN2C	rs3176468-C		3E-21				Affymetrix, Illumina [17972582] (imputed)	N
977	chr1	51438880	51438881	rs3176468	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	1p32.3	CDKN2C	rs3176468-C	0.203	7E-8	(AA)	0.055	[0.035-0.075] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
977	chr1	51438880	51438881	rs3176468	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	1p32.3	CDKN2C	rs3176468-C	0.204	5E-7	(AA)	0.067	[0.042-0.092] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
977	chr1	51439455	51439456	rs3176471	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke (large artery atherosclerosis)	401 European ancestry cases, 17,164 European ancestry controls, 23 African American ancestry cases, 352 African American ancestry controls, 257 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	NA	1p32.3	CDKN2C	rs3176471-T	NR	4E-8		3.7	[2.33-5.88]	Illumina [up to 13439215] (imputed)	N
977	chr1	51440092	51440093	rs12855	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p32.3	NR	rs12855-?	NR	5E-6		0.0356185	[0.02-0.051] unit increase	Illumina [34656550] (imputed)	N
977	chr1	51451498	51451499	rs11583886	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p32.3	CDKN2C, MIR4421	rs11583886-A	0.306108286025679	4E-12		0.0348	[0.025-0.045] SD decrease	Illumina [22400000] (imputed)	N
977	chr1	51452016	51452017	rs151035897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p32.3	CDKN2C	rs151035897-G	NR	6E-9		0.0487326	[0.032-0.065] unit increase	Affymetrix [321016] (imputed)	N
977	chr1	51452562	51452563	rs12567744	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p32.3	Intergenic	rs12567744-A	0.6709	5E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
977	chr1	51457199	51457200	rs72906810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p32.3		rs72906810-G	NR	2E-12		0.0876	[0.063-0.112] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
977	chr1	51457199	51457200	rs72906810	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.3	CDKN2C	rs72906810-G	0.8998	4E-11		0.2785	[0.2-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
977	chr1	51463423	51463424	rs10888713	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p32.3	CDKN2C, MIR4421	rs10888713-?	NR	3E-25		0.0508156	[0.041-0.06] unit increase	Illumina [27896057] (imputed)	N
977	chr1	51464564	51464565	rs6588396	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p32.3	C1orf185, RNF11	rs6588396-C	NR	2E-9		0.0376347	NR unit decrease	NR [NR] (imputed)	N
977	chr1	51465639	51465640	rs2453730	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs2453730-G	NR	9E-14		0.9464		Affymetrix [9869154] (imputed)	N
977	chr1	51467096	51467097	rs56168262	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p32.3	NR	rs56168262-C	0.4737	2E-8	(EA)	0.0372	[0.024-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
977	chr1	51470241	51470242	rs11588271	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	1p32.3	intergenic	rs11588271-A	0.310554	1E-20		0.326171	[0.26-0.39] ms decrease	Illumina [162199]	N
977	chr1	51477642	51477643	rs13376700	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	1p32.3	NR	rs13376700-?	NR	5E-10		1.1046	[1.0704-1.1398]	Illumina [7437091] (imputed)	N
977	chr1	51478335	51478336	rs35311109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p32.3		rs35311109-A	0.349973	4E-10		0.01463618	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
977	chr1	51478335	51478336	rs35311109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs35311109-A	0.277386	9E-12				Affymetrix, Illumina [24332387] (imputed)	N
977	chr1	51478335	51478336	rs35311109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p32.3	NR	rs35311109-A	0.34343	1E-13		0.014656	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
977	chr1	51478335	51478336	rs35311109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.3	Intergenic	rs35311109-A	0.3628	2E-8	(MTAG)	0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
977	chr1	51478335	51478336	rs35311109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.3	Intergenic	rs35311109-A	0.3622	5E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
977	chr1	51480257	51480258	rs7555006	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1p32.3	Intergenic	rs7555006-G	NR	6E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix [9304965] (imputed)	N
977	chr1	51490708	51490709	rs116760613	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p32.3	MIR4421	rs116760613-A	0.0238	2E-9		0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
977	chr1	51497277	51497278	rs58807574	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p32.3	NR	rs58807574-C	0.10625899999999999	9E-18		0.011398	[0.0088-0.014] unit increase	Affymetrix [16582909] (imputed)	N
977	chr1	51497277	51497278	rs58807574	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p32.3	NR	rs58807574-C	0.10625899999999999	2E-11		0.0105544	[0.0076-0.0135] unit increase	Affymetrix [16582965] (imputed)	N
977	chr1	51500451	51500452	rs66894853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	MIR4421	rs66894853-C	NR	7E-10		0.0262863	[0.018-0.035] unit increase	Affymetrix [323123] (imputed)	N
977	chr1	51506885	51506886	rs12088739	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1p32.3	MIR4421	rs12088739-G	0.089848136244033	1E-11		0.0884	[0.063-0.114] unit decrease	NR [5035015] (imputed)	N
977	chr1	51510941	51510942	rs76356735	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs76356735-?	NR	3E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51515745	51515746	rs111988223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p32.3		rs111988223-C	0.0892	1E-12		0.027528573	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
978	chr1	51515745	51515746	rs111988223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p32.3		rs111988223-C	0.0892770000000001	6E-13		0.0271227	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
978	chr1	51525329	51525330	rs7514622	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs7514622-?	NR	7E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51527683	51527684	rs6681713	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p32.3	MIR4421	rs6681713-T	0.9817	1E-12		0.4074	[0.29-0.52] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
978	chr1	51533565	51533566	rs112913593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	MIR4421	rs112913593-T	NR	2E-11		0.0567289	[0.04-0.073] unit increase	Affymetrix [323123] (imputed)	N
978	chr1	51535038	51535039	rs146518726	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p32.3	MIR6500	rs146518726-A	0.033	8E-15		1.17	[1.13-1.22]	Illumina [34740186] (imputed)	N
978	chr1	51535038	51535039	rs146518726	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p32.3	C1orf185	rs146518726-A	0.03	2E-10	(EA)	1.18	[1.12-1.24]	Affymetrix, Illumina [up to 12149979] (imputed)	N
978	chr1	51535038	51535039	rs146518726	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p32.3	C1orf185	rs146518726-A	0.03	2E-10		1.18	[1.12-1.24]	Affymetrix, Illumina [up to 12149979] (imputed)	N
978	chr1	51539889	51539890	rs6656199	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs6656199-?	NR	4E-10	(left cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51539889	51539890	rs6656199	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs6656199-?	NR	2E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51546139	51546140	rs17391905	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	1p32.3	intergenic	rs17391905-G	0.0246571686325849	3E-13		1.0575038	[0.77-1.34] ms decrease	Illumina [213295]	N
978	chr1	51546139	51546140	rs17391905	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p32.3	CDKN2C	rs17391905-?	NR	1E-11	(EA)	1.27	[0.9-1.64] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
978	chr1	51546139	51546140	rs17391905	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p32.3	CDKN2C	rs17391905-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
978	chr1	51546139	51546140	rs17391905	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p32.3	CDKN2C	rs17391905-T	0.95	9E-9	(European)	1.35	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
978	chr1	51546139	51546140	rs17391905	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p32.3	CDKN2C	rs17391905-T		5E-6		0.8	[0.45-1.15] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
978	chr1	51546139	51546140	rs17391905	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	1p32.3	RNF11, CDKN2C, FAF1, C1orf185	rs17391905-G	0.05	3E-10		1.35	[0.90-1.80] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
978	chr1	51558855	51558856	rs7530673	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	1p32.3		rs7530673-A	NR	4E-23		0.0542	[0.043-0.065] unit increase	Affymetrix [6193476] (imputed)	N
978	chr1	51572464	51572465	rs12072311	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs12072311-?	NR	3E-14	(right cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51572464	51572465	rs12072311	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs12072311-?	NR	2E-13	(left cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51575187	51575187	rs36020010	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs36020010-?	NR	7E-13	(right cerebellum exterior)			NR [9227495] (imputed)	N
978	chr1	51581470	51581471	rs112174050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p32.3		rs112174050-T	NR	2E-37		0.1021	[0.086-0.118] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
978	chr1	51581470	51581471	rs112174050	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p32.3	NR	rs112174050-T	0.02497	2E-43		0.009962	[0.0085-0.0114] unit increase	Affymetrix [NR] (imputed)	N
978	chr1	51592399	51592400	rs148657146	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	C1orf185	rs148657146-T	0.994	5E-6		0.289	NR unit decrease	Illumina [NR] (imputed)	N
978	chr1	51595005	51595006	rs187620787	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	C1orf185	rs187620787-T	0.006	5E-6		0.288	NR unit increase	Illumina [NR] (imputed)	N
978	chr1	51600061	51600062	rs181020201	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	C1orf185	rs181020201-A	0.997	7E-7		0.476	NR unit decrease	Illumina [NR] (imputed)	N
978	chr1	51604265	51604266	rs142698760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	C1orf185	rs142698760-A	0.006	4E-6		0.285	NR unit increase	Illumina [NR] (imputed)	N
978	chr1	51604366	51604367	rs184109064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	C1orf185	rs184109064-A	0.993	2E-6		0.3	NR unit decrease	Illumina [NR] (imputed)	N
978	chr1	51617509	51617510	rs180746259	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p32.3	Intergenic	rs180746259-A	0.994	5E-6		0.286	NR unit decrease	Illumina [NR] (imputed)	N
979	chr1	51655419	51655420	rs17106447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p32.3		rs17106447-C	NR	4E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
979	chr1	51655419	51655420	rs17106447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p32.3		rs17106447-?	NR	3E-10				NR [~ 8900000] (imputed)	N
979	chr1	51664730	51664731	rs12093778	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs12093778-?	NR	2E-12	(left cerebellum exterior)			NR [9227495] (imputed)	N
979	chr1	51746188	51746192	rs145842448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p32.3		rs145842448-T	NR	3E-9		0.0228	[0.015-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
979	chr1	51746188	51746188	rs543052776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	TTC39A	rs543052776-T	NR	3E-11		0.0328873	[0.023-0.043] unit increase	Affymetrix [323123] (imputed)	N
979	chr1	51762845	51762846	rs79492354	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs79492354-?	NR	3E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
980	chr1	51777747	51777748	rs7521849	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs7521849-?	NR	9E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
980	chr1	51796371	51796372	rs71503603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p32.3		rs71503603-?	NR	2E-9				NR [~ 8900000] (imputed)	N
980	chr1	51797861	51797862	rs76984936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p32.3		rs76984936-?	NR	2E-9				NR [~ 8900000] (imputed)	N
980	chr1	51800511	51800512	rs41287304	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fusobacterium A abundance in stool	5,959 Finnish ancestry individuals	NA	1p32.3		rs41287304-C	0.0232735	1E-9		0.127175	[0.086-0.168] unit increase	Illumina [7980478] (imputed)	N
980	chr1	51800511	51800512	rs41287304	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fusobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1p32.3		rs41287304-C	0.0232735	4E-8		0.0918482	[0.059-0.125] unit increase	Illumina [7980478] (imputed)	N
980	chr1	51801734	51801735	rs55681655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.3	Intergenic	rs55681655-A	0.807	1E-8	(MTAG)	0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
980	chr1	51801734	51801735	rs55681655	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p32.3	TTC39A	rs55681655-C	0.1912	6E-9		0.02650856	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
980	chr1	51817540	51817541	rs7538988	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	1p32.3	EPS15	rs7538988-C	0.03	1E-8		2.1	[1.37-2.83] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
980	chr1	51859241	51859242	rs6673480	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	1p32.3	EPS15	rs6673480-T	0.07	2E-6		1.35	[1.19-1.52]	Affymetrix, Illumina [2217510] (imputed)	N
980	chr1	51884951	51884952	rs78767748	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs78767748-?	NR	9E-10	(left cerebellum exterior)			NR [9227495] (imputed)	N
980	chr1	51884951	51884952	rs78767748	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs78767748-?	NR	1E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
981	chr1	51933773	51933774	rs7518049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1p32.3	NR	rs7518049-A	NR	9E-16		0.0671	[0.051-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	6E-9	(-150 ms)	0.104655	[0.069-0.14] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	6E-10	(-152 ms)	0.111705	[0.076-0.147] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	4E-8	(-148 ms)	0.0993268	[0.064-0.135] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	3E-10	(-158 ms)	0.113385	[0.078-0.149] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	2E-10	(-154 ms)	0.115298	[0.08-0.151] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51952497	51952497	rs112288630	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs112288630-T	0.972676	1E-10	(-156 ms)	0.115289	[0.08-0.151] unit increase	Affymetrix [10000000] (imputed)	N
981	chr1	51961024	51961025	rs189158373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p32.3	EPS15	rs189158373-T	NR	4E-11		0.0682836	[0.048-0.089] unit increase	Affymetrix [323123] (imputed)	N
981	chr1	51985041	51985042	rs2275004	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs2275004-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
981	chr1	51987475	51987476	rs35375774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p32.3		rs35375774-?	NR	6E-8				NR [~ 8900000] (imputed)	N
981	chr1	52007933	52007934	rs77083178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p32.3		rs77083178-A	NR	4E-10		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
981	chr1	52007974	52007975	rs72661391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p32.3	RP11-191G24.1	rs72661391-C	0.098827	5E-11		0.024425816	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
981	chr1	52008314	52008315	rs72661392	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p32.3	NR	rs72661392-T	0.098333	2E-11		0.021457	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
981	chr1	52013914	52013915	rs72661397	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p32.3	EPS15	rs72661397-T	0.9751	1E-8		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
982	chr1	52061444	52061445	rs116116372	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs116116372-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
983	chr1	52274077	52274078	rs7551758	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p32.3	NR	rs7551758-T	0.4671	5E-10		0.02573933	[0.018-0.034] unit decrease	NR [NR]	N
984	chr1	52297960	52297961	rs12135327	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p32.3		rs12135327-?	NR	8E-14		0.02	unit increase	NR [NR]	N
984	chr1	52307700	52307701	rs142478128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p32.3	NRD1	rs142478128-C	NR	3E-9		0.0514415	[0.034-0.068] unit increase	Affymetrix [321016] (imputed)	N
984	chr1	52307700	52307701	rs142478128	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p32.3	NRDC	rs142478128-T	0.9713	2E-10		0.0374	[0.026-0.049] unit decrease	Affymetrix [18391927] (imputed)	N
984	chr1	52334959	52334960	rs34172643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p32.3		rs34172643-A	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
984	chr1	52337038	52337039	rs1538881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs1538881-T	0.47147	5E-21				Affymetrix, Illumina [17210439] (imputed)	N
984	chr1	52342426	52342427	rs1890946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p32.3	NR	rs1890946-T	0.468205	3E-23		0.018974	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
984	chr1	52342426	52342427	rs1890946	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p32.3	NR	rs1890946-C	0.5329	9E-19		1.0193679	[1.02-1.02]	NR [8098588] (imputed)	N
984	chr1	52357568	52357569	rs11205903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs11205903-?	NR	1E-9				NR [~ 8900000] (imputed)	N
984	chr1	52406431	52406432	rs6588417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p32.3	RAB3B	rs6588417-A	0.602745	1E-13		0.016866405	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr1	52497076	52497077	rs35120342	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	1p32.3		rs35120342-?	NR	1E-7				Affymetrix [11524071] (imputed)	N
985	chr1	52504175	52504176	rs12406969	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs12406969-?	NR	2E-7		5.219	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
986	chr1	52632626	52632627	rs17401875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs17401875-?	NR	3E-17				NR [~ 8900000] (imputed)	N
987	chr1	52746500	52746501	rs114151376	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs114151376-?	NR	3E-7		5.142	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
987	chr1	52748431	52748432	rs144656250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p32.3	ZFYVE9	rs144656250-C	NR	3E-8		0.0464675	[0.03-0.063] unit increase	Affymetrix [321016] (imputed)	N
989	chr1	52964159	52964160	rs144781018	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs144781018-?	NR	7E-7		4.959	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
989	chr1	53030822	53030823	rs11581903	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	1p32.3	ZCCHC11, GPX7	rs11581903-?	NR	2E-7		0.078	[0.049-0.108] unit increase	Illumina [12039492] (imputed)	N
989	chr1	53063558	53063559	rs1097234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	GPX7	rs1097234-A	0.175	2E-73	(Glutathione peroxidase 7, GPX7.8345.27.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
989	chr1	53073396	53073397	rs946155	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	NR	rs946155-T	0.584	2E-61	(Glutathione peroxidase 7, GPX7.8345.27.3)	0.4	[0.36-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
989	chr1	53074411	53074412	rs1047619	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs1047619-?	NR	5E-6		4.57	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
990	chr1	53126154	53126155	rs269324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs269324-?	NR	7E-9				NR [~ 8900000] (imputed)	N
990	chr1	53133019	53133020	rs75029420	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p32.3	NR	rs75029420-A	0.9876	7E-7		0.3196	[0.19-0.45] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
990	chr1	53211536	53211536	rs11388141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p32.3		rs11388141-GT	NR	9E-15		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
991	chr1	53259949	53259950	rs11206019	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p32.3	NR	rs11206019-?	NR	5E-8	(AA)	43.78	[41.13-46.43]	Illumina [905956]	N
991	chr1	53278516	53278517	rs479581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p32.3		rs479581-C	NR	9E-16		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
991	chr1	53297141	53297142	rs551720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p32.3		rs551720-T	NR	9E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
991	chr1	53297141	53297142	rs551720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p32.3	ZYG11B	rs551720-T	0.633304	2E-12		0.016205356	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr1	53303201	53303201	rs11448215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p32.3		rs11448215-CA	NR	3E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
991	chr1	53315359	53315359	rs34097386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p32.3	ZYG11A	rs34097386-TC	0.592416	3E-13		0.016455485	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr1	53315360	53315360	rs770551112	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1p32.3	ZYG11A	rs770551112-CCT	0.5722	1E-9		0.02227305	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
991	chr1	53320273	53320274	rs480299	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p32.3	ZYG11A	rs480299-G		3E-12		0.016	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
991	chr1	53327206	53327207	rs576650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p32.3	ZYG11A	rs576650-C	0.382221	3E-17		0.01910902	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
991	chr1	53328393	53328394	rs575138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p32.3	ZYG11A	rs575138-G	0.617618	2E-14		0.017395481	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
991	chr1	53330457	53330458	rs514406	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p32.3	ZYG11A	rs514406-G	0.5943	1E-9		0.02218324	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
991	chr1	53333797	53333798	rs492582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p32.3		rs492582-C	NR	2E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
991	chr1	53333797	53333798	rs492582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p32.3	ZYG11A	rs492582-C	0.659887	3E-14		0.017826922	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
991	chr1	53336396	53336397	rs12718421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs12718421-G	0.585664	3E-17				Affymetrix, Illumina [23467995] (imputed)	N
991	chr1	53336396	53336397	rs12718421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p32.3	NR	rs12718421-G	0.642214	2E-19		0.018051	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
991	chr1	53336396	53336397	rs12718421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs12718421-G	0.558669	3E-19				Affymetrix, Illumina [24653286] (imputed)	N
991	chr1	53336396	53336397	rs12718421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p32.3	NR	rs12718421-G	0.642006	7E-19		0.017885	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
991	chr1	53336396	53336397	rs12718421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs12718421-G	0.561841	9E-27				Affymetrix, Illumina [24558453] (imputed)	N
991	chr1	53339795	53339796	rs562920588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p32.3	ZYG11A	rs562920588-A	0.639956	2E-19		0.020828009	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
991	chr1	53339795	53339796	rs562920588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p32.3	NR	rs562920588-A	0.639661	1E-26		0.021709	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
991	chr1	53340884	53340885	rs1672908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p32.3		rs1672908-?	NR	9E-16				NR [~ 8900000] (imputed)	N
992	chr1	53352015	53352016	rs1242198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs1242198-A	0.493113	1E-15				Affymetrix, Illumina [24332387] (imputed)	N
992	chr1	53352015	53352016	rs1242198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p32.3	NR	rs1242198-A	0.610733	5E-17		0.015894	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
993	chr1	53530486	53530487	rs11584649	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TST	5,364 Icelandic ancestry individuals	NA	1p32.3		rs11584649-T	0.03545	9E-20		0.466305	[0.37-0.57] unit increase	Illumina [7506463] (imputed)	N
993	chr1	53530616	53530617	rs17107803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	PODN	rs17107803-C	0.049	3E-24	(Thiosulfate sulfurtransferase, TST.12663.1.3)	0.58	[0.46-0.7] unit increase	Affymetrix [10572788] (imputed)	N
993	chr1	53548985	53548986	rs10157941	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p32.3	PODN	rs10157941-?	NR	9E-9		0.021118319	[0.014-0.028] unit decrease	Illumina [27896057] (imputed)	N
993	chr1	53550639	53550640	rs41294750	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	1p32.3	NR	rs41294750-C		2E-6		0.3514	[0.2-0.5] SD units decrease	NR [10700000] (imputed)	N
993	chr1	53581669	53581670	rs3820201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p32.3		rs3820201-G	NR	4E-10		0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
993	chr1	53581669	53581670	rs3820201	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	NR	rs3820201-G	0.371	5E-18	(Thiosulfate sulfurtransferase, TST.12663.1.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
993	chr1	53581669	53581670	rs3820201	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	1p32.3	SLC1A7	rs3820201-A	0.62	1E-6	(Hippocampal volume)			Illumina [2131250] (imputed)	N
993	chr1	53589800	53589801	rs1679971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs1679971-?	NR	2E-25				NR [~ 8900000] (imputed)	N
993	chr1	53595728	53595729	rs3766808	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TST	5,364 Icelandic ancestry individuals	NA	1p32.3		rs3766808-T	0.1871	4E-22		0.230549	[0.18-0.28] unit decrease	Illumina [7506463] (imputed)	N
994	chr1	53629584	53629585	rs6695567	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1p32.3	SLC1A7	rs6695567-?	0.57	4E-6	(anti-dsDNA +)	1.32	[1.18-1.47]	Illumina [421318] (imputed)	N
994	chr1	53657594	53657595	rs12410239	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p32.3	LRP8	rs12410239-A	0.38	4E-18	(methylsuccinoylcarnitine)	0.235	[0.18-0.29] unit increase	Illumina [7750367] (imputed)	N
994	chr1	53658459	53658460	rs76880674	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	1p32.3	CPT2	rs76880674-A	0.1852	2E-9	(C16)	0.0911	[0.057-0.126] unit increase	Illumina [~ 47000000] (imputed)	N
994	chr1	53669423	53669424	rs77466051	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	1p32.3	CPT2	rs77466051-A	0.7793	2E-18	(C5-DC)	0.0877	[0.063-0.113] unit increase	Illumina [~ 47000000] (imputed)	N
994	chr1	53672027	53672028	rs11581518	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p32.3	CPT2	rs11581518-A	0.851231	1E-11	(adipoylcarnitine (C6-DC))	0.208	[0.15-0.27] unit decrease	Illumina [13039987] (imputed)	N
994	chr1	53676400	53676401	rs2229291	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p32.3	CPT2	rs2229291-T	0.974484	9E-12	(glutarylcarnitine (C5-DC))	0.471	[0.34-0.61] unit increase	Illumina [13039987] (imputed)	N
994	chr1	53679228	53679229	rs1799822	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p32.3	CPT2	rs1799822-A	0.850739	4E-12	(glutarylcarnitine (C5-DC))	0.219	[0.16-0.28] unit increase	Illumina [13039987] (imputed)	N
994	chr1	53679228	53679229	rs1799822	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.3	NR	rs1799822-G	0.1916	2E-9	(CPT2)	0.07517	NR unit decrease	Illumina [1671387] (imputed)	N
994	chr1	53689076	53689077	rs80178823	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p32.3	NR	rs80178823-C	NR	3E-6	(GEE model)	1.1552	[0.67-1.64] unit decrease	NR [NR] (imputed)	N
994	chr1	53695881	53695882	rs13375749	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	1p32.3	CPT2	rs13375749-C	0.21	2E-10	(methylsuccinoylcarnitine,  X-24468,  X-24469,  X-24971)	0.006	[0.004-0.008] unit decrease	Illumina [7750367] (imputed)	N
994	chr1	53695881	53695882	rs13375749	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p32.3	CPT2	rs13375749-T	0.78	3E-28	(glutaroyl carnitine)	0.03	[0.024-0.036] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
994	chr1	53707952	53707953	rs17785382	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p32.3	LRP8	rs17785382-A	0.5924	5E-13		0.017387224	[0.013-0.022] unit increase	Affymetrix [11515109] (imputed)	N
994	chr1	53708849	53708850	rs3737984	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP8	5,358 Icelandic ancestry individuals	NA	1p32.3		rs3737984-T	0.4274	4E-16		0.151213	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
994	chr1	53712726	53712727	rs5174	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p32.3		rs5174-T	0.4	3E-26		10.6	z score increase	Affymetrix [9061022] (imputed)	N
994	chr1	53712726	53712727	rs5174	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.3		rs5174-T	0.4	1E-28		11.11	z score increase	Affymetrix [9061022] (imputed)	N
994	chr1	53712726	53712727	rs5174	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p32.3		rs5174-T	0.4	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
994	chr1	53712726	53712727	rs5174	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p32.3	NR	rs5174-T	0.4164	1E-17				NR [9056863] (imputed)	N
994	chr1	53712726	53712727	rs5174	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p32.3	NR	rs5174-T	0.4164	2E-12				NR [9056863] (imputed)	N
994	chr1	53712726	53712727	rs5174	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p32.3		rs5174-?	NR	6E-10				NR [9705931] (imputed)	N
994	chr1	53712726	53712727	rs5174	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p32.3	LRP8	rs5174-T	0.405	1E-8		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
994	chr1	53723221	53723222	rs13306536	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	1p32.3	LRP8	rs13306536-?	NR	1E-6		1.3	[1.16-1.42]	Illumina [5768242] (imputed)	N
994	chr1	53734997	53734998	rs10788951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.3	Intergenic	rs10788951-A	0.4122	1E-10	(MTAG)	0.0087	[0.0062-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
994	chr1	53736135	53736136	rs12028465	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	1p32.3	CPT2	rs12028465-A	0.400161	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
994	chr1	53739184	53739185	rs11206132	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	CPT2, C1orf123, MAGOH, LRP8	rs11206132-?		4E-11				NR [7428630] (imputed)	N
995	chr1	53740796	53740797	rs6696068	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.3		rs6696068-T	0.3838	1E-9		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
995	chr1	53743676	53743677	rs10788954	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p32.3	NR	rs10788954-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
995	chr1	53777630	53777631	rs2788032	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	1p32.3	LRP8	rs2788032-C	0.08	6E-6	(Hispanic)	0.15	[0.09-0.22] unit increase	Affymetrix [706791]	N
995	chr1	53805881	53805882	rs10218811	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p32.3	LRP8	rs10218811-A	0.72484375	1E-9	(LRP8, 3323_37_1)	0.16637439	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
995	chr1	53845439	53845440	rs2185077	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p32.3	NR	rs2185077-T	NR	3E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
996	chr1	53871084	53871085	rs114216682	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	1p32.3	FLJ40434	rs114216682-G	0.97	7E-8		4.49		Illumina [~ 6300000] (imputed)	N
996	chr1	53874443	53874444	rs72675151	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	1p32.3		rs72675151-A	0.4551	1E-5		0.7874	[0.7083-0.8753]	Affymetrix [7975321] (imputed)	N
996	chr1	53884456	53884457	rs1776421	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.3	NR	rs1776421-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
996	chr1	53891893	53891894	rs138899409	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1p32.3	Intergenic	rs138899409-T	NR	4E-6		0.0579593	[0.033-0.083] unit decrease	Illumina [13520550] (imputed)	N
996	chr1	53917442	53917443	rs41366756	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.3	NR	rs41366756-?	NR	4E-23				Affymetrix [NR]	N
996	chr1	53958186	53958187	rs114313448	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p32.3	NR	rs114313448-?	NR	1E-8				Illumina [7760689] (imputed)	N
996	chr1	53958602	53958603	rs1298637	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	1p32.3	GLIS1	rs1298637-A	0.261	5E-6		5.972	[NR] unit increase	Illumina [527829]	N
996	chr1	53968218	53968219	rs185031519	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	1p32.3	GLIS1, DMRTB1, LRP8, SLC25A3P1	rs185031519-G	0.042	2E-8		0.059	[0.039-0.079] unit decrease	Illumina [7358575] (imputed)	N
996	chr1	53978118	53978119	rs6588480	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p32.3	GLIS1, DMRTB1, FLJ40434	rs6588480-A	0.15	8E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
997	chr1	54006042	54006043	rs7540317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p32.3		rs7540317-?	NR	1E-10				NR [~ 8900000] (imputed)	N
997	chr1	54006042	54006043	rs7540317	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p32.3	NR	rs7540317-C	0.399012	8E-24		0.0315374	[0.025-0.038] unit increase	NR [19129689] (imputed)	N
997	chr1	54040669	54040670	rs10788958	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1p32.3	GLIS1	rs10788958-C	0.3512	4E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
997	chr1	54068015	54068016	rs4927012	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	1p32.3	GLIS1	rs4927012-T	0.875	2E-8		0.357	[0.23-0.48] unit decrease	Illumina [8400000] (imputed)	N
997	chr1	54068015	54068016	rs4927012	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	1p32.3	GLIS1	rs4927012-T	0.875	5E-10	(EA)	0.358	[0.24-0.47] unit decrease	Illumina [8400000] (imputed)	N
997	chr1	54068015	54068016	rs4927012	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	1p32.3	GLIS1	rs4927012-T	0.859	8E-9		0.292	[0.19-0.39] unit decrease	Illumina [8400000] (imputed)	N
997	chr1	54068015	54068016	rs4927012	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	1p32.3	GLIS1	rs4927012-T	0.875	2E-11		0.384	[0.27-0.5] unit decrease	Illumina [8400000] (imputed)	N
997	chr1	54111732	54111733	rs4926611	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	1p32.3	GLIS1	rs4926611-C	0.637	5E-12		0.1556	[0.11-0.2] kg increase	Affymetrix [at least 17000000] (imputed)	N
997	chr1	54119577	54119578	rs17387330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs17387330-?	NR	4E-18				NR [~ 8900000] (imputed)	N
997	chr1	54120872	54120873	rs2141079	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p32.3	NR	rs2141079-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
997	chr1	54123872	54123873	rs941125	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	1p32.3	GLIS1	rs941125-T	NR	8E-7		1.10329	[1.06-1.14]	Illumina [11610548] (imputed)	N
997	chr1	54123872	54123873	rs941125	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p32.3	GLIS1	rs941125-T	NR	6E-8		0.0397	unit increase	Illumina [15409056] (imputed)	N
998	chr1	54138853	54138854	rs1879734	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	1p32.3	GLIS1	rs1879734-T	0.28	1E-7		1.23	[1.14-1.33]	Affymetrix, Illumina [~ 4800000] (imputed)	N
998	chr1	54182884	54182885	rs147747653	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	1p32.3	NR	rs147747653-C		2E-6		0.3692	[0.22-0.52] SD units decrease	NR [10700000] (imputed)	N
998	chr1	54191810	54191811	rs72660683	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p32.3	GLIS1, SSBP3	rs72660683-?		7E-13				Affymetrix, Illumina [NR] (imputed)	N
998	chr1	54194991	54194992	rs702491	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	1p32.3	NR	rs702491-T	0.2	2E-6		4.74	[NR] z score increase	Illumina [9009554] (imputed)	N
998	chr1	54195017	54195018	rs702490	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p32.3	NR	rs702490-A	0.334332	3E-12		0.0238817	[0.017-0.031] unit increase	NR [19129689] (imputed)	N
998	chr1	54195017	54195018	rs702490	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	1p32.3	GLIS1	rs702490-?	NR	2E-45		0.055	[0.063-0.047] unit decrease	Illumina [12039491] (imputed)	N
998	chr1	54197687	54197688	rs702489	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	1p32.3	GLIS1	rs702489-?	NR	3E-9		0.038	[0.025-0.050] unit increase	Illumina [12039491] (imputed)	N
998	chr1	54204447	54204448	rs761489	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p32.3	NR	rs761489-C	0.094393	7E-9		0.0317978	[0.021-0.043] unit increase	NR [19129689] (imputed)	N
998	chr1	54204856	54204865	rs544915695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p32.3	NR	rs544915695-A	NR	2E-9		0.0209	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
998	chr1	54204962	54204963	rs797903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p32.3		rs797903-C	NR	1E-10		0.0202	[0.014-0.026] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
999	chr1	54273278	54273279	rs35265457	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants and depression	7,795 European ancestry responder cases, 191,173 European ancestry healthy controls	NA	1p32.3	NDC1	rs35265457-?		2E-6		1.508	[1.261-1.803]	Illumina [~ 12000000] (imputed)	N
999	chr1	54298701	54298702	rs199887742	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	1p32.3	NR	rs199887742-?	NR	6E-6		0.2228	[0.12-0.32] unit increase	Illumina [at least 560000] (imputed)	N
999	chr1	54306925	54306926	rs12144164	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPX7	5,349 Icelandic ancestry individuals	NA	1p32.3		rs12144164-C	0.02307	1E-12		0.129354	[0.094-0.165] unit increase	Illumina [7506463] (imputed)	N
999	chr1	54320336	54320337	rs11206226	22719876	Kawaguchi T	2012-06-14	PLoS One	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NA	1p32.3	YIPF1	rs11206226-A	0.848	5E-6		1.72	[1.35-2.22]	Illumina [484751]	N
999	chr1	54324401	54324402	rs141290983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASH2L	5,361 Icelandic ancestry individuals	NA	1p32.3		rs141290983-A	0.01176	1E-12		0.107644	[0.078-0.137] unit increase	Illumina [7506463] (imputed)	N
999	chr1	54357985	54357986	rs10788969	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	1p32.3	NR	rs10788969-?	NR	1E-8	(Prevotella_oulorum)	3.58366	[3.14-4.02]	Illumina [5293637] (imputed)	N
999	chr1	54375569	54375570	rs2235544	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Free thyroxine concentration	2,287 European ancestry whole-genome sequenced individuals, 11,364 European ancestry individuals	NA	1p32.3	DIO1	rs2235544-A	0.499	5E-34		0.154	[0.13-0.18] unit increase	Illumina [at least 9558836] (imputed)	N
999	chr1	54375569	54375570	rs2235544	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1p32.3	NR	rs2235544-A	0.46	6E-7	(HD vs. controls)	1.3	[1.17-1.44]	Illumina [414804]	N
999	chr1	54375569	54375570	rs2235544	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p32.3	DIO1	rs2235544-A	0.51	8E-32	(FT4)	0.138	[0.11-0.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
999	chr1	54375569	54375570	rs2235544	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p32.3	DIO1	rs2235544-A	0.51	5E-15	(FT4-Males)	0.143	[0.11-0.18] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
999	chr1	54375569	54375570	rs2235544	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p32.3	DIO1	rs2235544-A	0.51	3E-18	(FT4-Females)	0.13	[0.1-0.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
999	chr1	54382731	54382732	rs79319225	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	1p32.3	HSPB11, LRRC42, DIO1, TMEM59	rs79319225-?	NR	1E-10	(3-methyladipate)	0.75	[NR] unit increase	Illumina [14760605] (imputed)	N
999	chr1	54389776	54389778	rs569941592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p32.3		rs569941592-T	NR	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1000	chr1	54443864	54443865	rs114147144	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.3	NR	rs114147144-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1000	chr1	54450997	54450998	rs651381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p32.3	NR	rs651381-A	0.560415	9E-11		0.011854	[0.0083-0.0154] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1000	chr1	54450997	54450998	rs651381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p32.3		rs651381-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1000	chr1	54469083	54469084	rs72664111	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.3	NR	rs72664111-?	NR	1E-6		4.853	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1001	chr1	54564484	54564485	rs75473520	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p32.3		rs75473520-?	NR	8E-6		1.099443	[1.05451872318898-1.1462810082918]	Illumina [up to 7827597] (imputed)	N
1001	chr1	54572242	54572243	rs10788972	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	1p32.3	TCEANC2, LDLRAD1, TMEM59	rs10788972-?	0.435	6E-8		1.56	[NR]	Illumina [3922209] (imputed)	N
1001	chr1	54575745	54575746	rs4927055	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	1p32.3	NR	rs4927055-T	0.328646	3E-6		4.70515	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
1001	chr1	54605556	54605557	rs138864964	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	1p32.3	CDCP2	rs138864964-T	0.319	2E-11		0.04598		Illumina [243345]	N
1001	chr1	54617255	54617256	rs9436480	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	1p32.3	NR	rs9436480-?	NR	7E-7		0.0285	[0.017-0.04] unit increase	Illumina [~ 7800000] (imputed)	N
1001	chr1	54651172	54651173	rs144657844	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	1p32.3	NR	rs144657844-C		3E-6		0.4778	[0.27-0.68] SD units decrease	NR [10700000] (imputed)	N
1002	chr1	54664920	54664921	rs4926623	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	1p32.3	RP11-446E24.4, CYB5RL, MRPL37	rs4926623-A	0.42	4E-6		0.149	[0.086-0.212] unit decrease	Illumina [6380737] (imputed)	N
1002	chr1	54668277	54668278	rs1890566	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	1p32.3	intergenic	rs1890566-G	0.43	8E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1002	chr1	54672073	54672074	rs11206301	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1p32.3	MRPL37	rs11206301-C	NR	8E-6		0.15703459	[0.088-0.226] unit increase	Affymetrix [9576485] (imputed)	N
1002	chr1	54673096	54673097	rs10888838	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	1p32.3	MRPL37	rs10888838-?	NR	4E-6	(Males)		[NR]	Illumina [283437]	N
1002	chr1	54673942	54673943	rs11206302	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	1p32.3	NR	rs11206302-C		2E-6		0.1189	[0.07-0.168] SD units increase	NR [10700000] (imputed)	N
1002	chr1	54686373	54686374	rs612711	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		1p32.3	NR	rs612711-T	0.414926	9E-6		1.1223345	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1002	chr1	54696742	54696743	rs4061073	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p32.3	SSBP3	rs4061073-G	0.302	4E-6		0.015	[0.0087-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1002	chr1	54726087	54726088	rs702496	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p32.3	SSBP3	rs702496-C	0.5509	1E-9		0.4076	[0.28-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1002	chr1	54728857	54728858	rs643428	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	1p32.3	SSBP3-AS1	rs643428-C	0.393146	2E-9	(EA)	0.00768192	[0.0052-0.0102] unit increase	Affymetrix [~ 8800000] (imputed)	N
1002	chr1	54728857	54728858	rs643428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p32.3		rs643428-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1002	chr1	54728863	54728864	rs630602	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p32.3	SSBP3	rs630602-G	0.393414	2E-12		0.0101454	[0.0073-0.013] unit decrease	Affymetrix [12370749]	N
1002	chr1	54728863	54728864	rs630602	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p32.3	SSBP3	rs630602-G	0.393414	4E-8		0.00772636	[0.005-0.0105] unit decrease	Affymetrix [12370749]	N
1002	chr1	54728863	54728864	rs630602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p32.3	NR	rs630602-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1002	chr1	54728863	54728864	rs630602	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p32.3	NA	rs630602-C	0.6073	1E-12		0.0126	[0.0091-0.0161] unit increase	NR [~ 27400000] (imputed)	N
1002	chr1	54728863	54728864	rs630602	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p32.3	NA	rs630602-C	0.6073	1E-12		0.0126	[0.0091-0.0161] unit increase	NR [~ 27400000] (imputed)	N
1002	chr1	54728863	54728864	rs630602	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	1p32.3	SSBP3	rs630602-?	NR	1E-8		0.026	[0.017-0.034] unit increase	Illumina [12039492]	N
1002	chr1	54729557	54729558	rs79179757	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p32.3	NR	rs79179757-?	NR	9E-6		0.77848	[0.44-1.12] unit increase	NR [13958389] (imputed)	N
1002	chr1	54731154	54731155	rs3753414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p32.3		rs3753414-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1002	chr1	54741766	54741767	rs603901	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p32.3	SSBP3	rs603901-T	0.58	3E-11		0.43	[0.31-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1002	chr1	54741766	54741767	rs603901	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p32.3	SSBP3	rs603901-C	0.435	6E-21		0.049	[0.039-0.059] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1002	chr1	54742077	54742078	rs536684	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1p32.3	SSBP3	rs536684-?	NR	7E-6				Affymetrix, Illumina [22000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	9E-22	(236 ms)	0.0529311	[0.042-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-26	(220 ms)	0.0582474	[0.047-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-25	(228 ms)	0.0570177	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-24	(232 ms)	0.0559994	[0.045-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-21	(242 ms)	0.0514124	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-19	(246 ms)	0.047917	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-18	(248 ms)	0.0464832	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	7E-17	(250 ms)	0.0450036	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	6E-29	(196 ms)	0.0619149	[0.051-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	6E-28	(214 ms)	0.0611847	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	4E-27	(210 ms)	0.0601975	[0.049-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-27	(212 ms)	0.0603759	[0.049-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-26	(218 ms)	0.0591702	[0.048-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-21	(240 ms)	0.0520346	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-21	(238 ms)	0.0521431	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-20	(244 ms)	0.0501121	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	3E-12	(258 ms)	0.0374183	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	2E-27	(216 ms)	0.0607018	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	2E-24	(224 ms)	0.0565041	[0.045-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	2E-23	(234 ms)	0.054643	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	1E-25	(222 ms)	0.0576155	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	1E-24	(230 ms)	0.0568757	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	1E-24	(226 ms)	0.0567416	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs590041-T	0.420491	1E-15	(252 ms)	0.042932	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1002	chr1	54742470	54742471	rs590041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p32.3	SSBP3	rs590041-T	0.432842	1E-13		0.016598808	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr1	54742617	54742618	rs562408	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.433	5E-12	(men)	0.052	[0.036-0.068] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1002	chr1	54742617	54742618	rs562408	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.433	1E-10	(women)	0.046	[0.032-0.06] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1002	chr1	54742617	54742618	rs562408	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.43	2E-8		0.035	[0.023-0.047] unit increase	NR [~ 9000000] (imputed)	N
1002	chr1	54742617	54742618	rs562408	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.43	4E-8		0.027	[0.017-0.037] unit increase	NR [~ 9000000] (imputed)	N
1002	chr1	54742617	54742618	rs562408	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.44	2E-8	(EA)	0.53	[0.35-0.71] ms decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
1002	chr1	54742617	54742618	rs562408	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	1p32.3	SSBP3	rs562408-A	0.43	3E-9		0.52	[0.34-0.7] ms decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
1002	chr1	54776174	54776175	rs11206328	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	1p32.3	SSBP3	rs11206328-G	0.035	7E-6	(men)	0.181	[0.1-0.26] mg/dL increase	Illumina [622468]	N
1003	chr1	54839485	54839485	rs150647904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p32.3	SSBP3	rs150647904-TCAG	0.12	2E-9		0.03296236	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1003	chr1	54841837	54841838	rs6699195	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.3		rs6699195-T	0.49	4E-10		6.24	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr1	54841864	54841864	rs145081564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p32.3	SSBP3	rs145081564-GGT	0.118386	7E-15		0.026898257	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr1	54844601	54844602	rs12029610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p32.3		rs12029610-T	NR	8E-20		0.0232	[0.018-0.028] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1003	chr1	54846585	54846586	rs6664992	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p32.3	NR	rs6664992-A	0.483	1E-11				NR [9056863] (imputed)	N
1003	chr1	54846585	54846586	rs6664992	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs6664992-?		2E-13				NR [7428630] (imputed)	N
1003	chr1	54848104	54848105	rs56059850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p32.3		rs56059850-C	NR	4E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1003	chr1	54848826	54848827	rs80020578	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p32.3	SSBP3	rs80020578-A	0.2154	8E-14		0.007	[0.0052-0.0088] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1003	chr1	54848839	54848840	rs111900181	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	1p32.3	SSBP3	rs111900181-?	NR	7E-11		0.0249	[0.017-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1003	chr1	54848891	54848891	rs112003124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	1p32.3		rs112003124-CA	0.338088	2E-11		0.0239594	[0.017-0.031] unit increase	Illumina [13478792] (imputed)	N
1003	chr1	54852993	54852994	rs11206344	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	SSBP3	rs11206344-?		9E-21				NR [7428630] (imputed)	N
1003	chr1	54854078	54854079	rs6690450	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p32.3		rs6690450-C	0.49	8E-11		6.5	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr1	54854078	54854079	rs6690450	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1p32.3	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs6690450-?		9E-10				NR [7428630] (imputed)	N
1003	chr1	54854078	54854079	rs6690450	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1p32.3	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs6690450-?		2E-11				NR [7428630] (imputed)	N
1003	chr1	54854078	54854079	rs6690450	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p32.3	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs6690450-?		3E-9				NR [7428630] (imputed)	N
1003	chr1	54858763	54858764	rs213485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs213485-G	0.413157	4E-12				Affymetrix, Illumina [24588908] (imputed)	N
1003	chr1	54858871	54858872	rs213484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p32.3		rs213484-C	NR	3E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1003	chr1	54858911	54858912	rs213483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p32.3	NR	rs213483-T	0.367287	2E-12		0.01326	[0.0096-0.017] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1003	chr1	54877102	54877103	rs213494	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p32.3	SSBP3	rs213494-C	0.351655	8E-14		0.0155476	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr1	54877102	54877103	rs213494	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p32.3	SSBP3	rs213494-?	NR	1E-10		0.0176	[0.013-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1003	chr1	54884038	54884039	rs12752990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.3	NR	rs12752990-A	0.456999	1E-17				Affymetrix, Illumina [23467995] (imputed)	N
1003	chr1	54884867	54884867	rs140831700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p32.3		rs140831700-TTC	NR	1E-12		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1003	chr1	54889010	54889011	rs56293542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p32.3	RP4-705F19.1	rs56293542-T	0.477544	2E-19		0.019982068	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr1	54890955	54890956	rs1883783	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p32.3	SSBP3	rs1883783-T	0.430714	2E-10		0.00143219	[0.00098-0.00188] unit decrease	Affymetrix [13995440] (imputed)	N
1003	chr1	54890955	54890956	rs1883783	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p32.3	NR	rs1883783-T	0.429706	7E-14		0.00632738	[0.0047-0.008] unit increase	Affymetrix [16582909] (imputed)	N
1003	chr1	54890955	54890956	rs1883783	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p32.3	NR	rs1883783-T	0.430169	3E-8		0.0064742	[0.0042-0.0087] unit increase	Affymetrix [16582621] (imputed)	N
1003	chr1	54890955	54890956	rs1883783	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p32.3	NR	rs1883783-T	0.429706	5E-11		0.00628656	[0.0044-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
1003	chr1	54890955	54890956	rs1883783	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p32.3	NR	rs1883783-T	0.430169	4E-6		0.00599599	[0.0036-0.0084] unit increase	Affymetrix [16582614] (imputed)	N
1003	chr1	54891878	54891883	rs139356207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p32.3		rs139356207-T	0.444208	2E-11		0.015131056	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1003	chr1	54905069	54905070	rs72895864	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p32.3	NR	rs72895864-A	0.067	7E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1003	chr1	54917532	54917533	rs72665995	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	1p32.3		rs72665995-G	0.904	5E-6		0.1	[0.057-0.143] unit decrease	Affymetrix [6030650] (imputed)	N
1004	chr1	54926524	54926526	rs200637013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p32.3	NR	rs200637013-A	0.466	5E-9		0.013321972	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chr1	54931395	54931396	rs12121623	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Food allergy	671 European ancestry child cases, 144 European ancestry non-allergic non-sensitized child controls, 234 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	1p32.3	SSBP3, ACOT11	rs12121623-?	NR	3E-7				Illumina [6459842] (imputed)	N
1004	chr1	54949046	54949047	rs114894862	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p32.3	NR	rs114894862-?	NR	4E-8				Illumina [7760689] (imputed)	N
1004	chr1	54953403	54953404	rs4927132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs4927132-?	NR	5E-26				NR [~ 8900000] (imputed)	N
1004	chr1	54992938	54992939	rs12752888	22833209	Hu X	2011-11-15	Transl Psychiatry	Genome-wide association study identifies multiple novel loci associated with disease progression in subjects with mild cognitive impairment.	Rate of cognitive decline in mild cognitive impairment (time interaction)	822 European ancestry individuals	NA	1p32.3	ACOT11	rs12752888-C		3E-11				Illumina [233603]	N
1004	chr1	55006789	55006790	rs112372564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM151A	5,368 Icelandic ancestry individuals	NA	1p32.3		rs112372564-T	0.01025	2E-8		0.51014	[0.33-0.69] unit decrease	Illumina [7506463] (imputed)	N
1004	chr1	55037864	55037869	rs72301097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p32.3	ACOT11	rs72301097-G	0.2118	2E-6		0.0389	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr1	55045675	55045676	rs12059231	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	1p32.3	ACOT11	rs12059231-?	NR	3E-6	(AA)			Illumina [up to 666531]	N
1005	chr1	55072725	55072726	rs1616691	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	1p32.3		rs1616691-T	0.396199	1E-8		0.0234663	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1005	chr1	55076137	55076166	rs373739034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	NR	rs373739034-C	0.044	3E-16	(Protein FAM151A, FAM151A.7856.51.3)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr1	55097067	55097068	rs11206397	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM151A	5,368 Icelandic ancestry individuals	NA	1p32.3		rs11206397-T	0.3243	7E-40		0.263696	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
1005	chr1	55097067	55097068	rs11206397	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.3	FAM151A	rs11206397-T	0.327	3E-24	(Protein FAM151A, FAM151A.7856.51.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1005	chr1	55099958	55099959	rs2317621	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	1p32.3	ACOT11	rs2317621-?	0.7316	6E-6		1.3132718	[1.17-1.48]	Affymetrix, Illumina [NR] (imputed)	N
1005	chr1	55100020	55100021	rs140275361	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.3	NR	rs140275361-C	0.01045	1E-8	(ACSM2B)	1.461	NR unit increase	Illumina [1671387] (imputed)	N
1005	chr1	55103944	55103945	rs10736390	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p32.3	FAM151A	rs10736390-G	0.35359375	2E-22	(FAM151A, 7856_51_3)	0.24560067	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1005	chr1	55103944	55103945	rs10736390	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	1p32.3	ACOT11	rs10736390-?	NR	2E-6		1.3333333	[1.19-1.52]	NR [7738399] (imputed)	N
1005	chr1	55107018	55107019	rs1368882	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NA	1p32.3	GLIS1	rs1368882-A	0.379	2E-6		1.752	[NR] unit increase	Illumina [527829]	N
1005	chr1	55138290	55138291	rs78080497	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM151A	5,368 Icelandic ancestry individuals	NA	1p32.3		rs78080497-G	0.01777	3E-11		0.468979	[0.33-0.61] unit decrease	Illumina [7506463] (imputed)	N
1005	chr1	55167772	55167773	rs646356	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	1p32.3	HEATR8	rs646356-?	NR	9E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1005	chr1	55167772	55167773	rs646356	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	1p32.3	HEATR8	rs646356-?	NR	2E-6		0.263	[0.16-0.37] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1006	chr1	55228128	55228129	rs1180949	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.3	NR	rs1180949-?	NR	1E-21				Affymetrix [NR]	N
1006	chr1	55246034	55246035	rs12144319	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	1p32.3	NR	rs12144319-C	0.2722	3E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1006	chr1	55247851	55247852	rs12143541	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	1p32.3	NR	rs12143541-G	0.15	9E-10		1.1	[1.06-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
1006	chr1	55284526	55284527	rs588709	31900429	Sliz E	2020-01-03	Mol Psychiatry	A variant near DHCR24 associates with microstructural properties of white matter and peripheral lipid metabolism in adolescents.	Visceral fat, circulating phospholipid PC(16:0/2:0) and white matter microstructure (shared variance)	872 French-Canadian (founder/genetic isolate) ancestry adolescents from up to 486 families	NA	1p32.3	DHCR24	rs588709-G	0.36	4E-8				Illumina [8511049] (imputed)	N
1006	chr1	55301935	55301936	rs11588154	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Finger osteoarthritis	10,804 European ancestry cases, 255,814 European ancestry controls	NA	1p32.3		rs11588154-T	0.1656	6E-10		0.83235186	[0.785283146-0.882241837]	Affymetrix, Illumina [NR] (imputed)	N
1006	chr1	55304969	55304970	rs7549251	32912094	Jaworek T	2020-09-11	Stroke	Exome Array Analysis of Early-Onset Ischemic Stroke.	Early-onset ischemic stroke	330 African American cases, 393 European ancestry cases, 298 African American controls, 428 European ancestry controls	NA	1p32.3	LEXM	rs7549251-G	0.61	4E-7		1.5		Illumina [243497]	N
1007	chr1	55339437	55339438	rs597021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.3		rs597021-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1007	chr1	55433529	55433530	rs72905574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs72905574-T	NR	2E-14		0.0314	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr1	55433529	55433530	rs72905574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs72905574-T	NR	5E-17		0.0344	[0.026-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr1	55433529	55433530	rs72905574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs72905574-T	NR	3E-14		0.0312	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55464742	55464743	rs2500340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs2500340-C	NR	5E-10		0.0178	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55464742	55464743	rs2500340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs2500340-C	NR	6E-10		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55472364	55472365	rs4927186	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease and diabetic kidney disease in type 2 diabetes	408 European ancestry cases, 1,890 European ancestry controls	1,408 European ancestry cases, 3,840 European ancestry controls, 268 Asian cases, 632 Asian controls, 75 Chinese ancestry cases, 119 Chinese ancestry controls	1p32.3	NR	rs4927186-?		8E-6	(EA)	1.43	[1.30-1.57]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1008	chr1	55477982	55477983	rs139902163	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1p32.3	NR	rs139902163-?	NR	5E-6		0.8906	[0.49-1.29] unit increase	Illumina [at least 560000] (imputed)	N
1008	chr1	55479536	55479537	rs539658625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.3		rs539658625-T	NR	2E-8		0.6607	[0.43-0.89] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1008	chr1	55479536	55479537	rs539658625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.3		rs539658625-T	0.009755792	2E-8		0.6607489	[0.43-0.89] unit increase	Illumina [13425416] (imputed)	N
1008	chr1	55480373	55480374	rs2149039	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	1p32.3	BSND	rs2149039-?	NR	7E-7	(Latino)	1.56	[1.22-2.17]	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55481831	55481832	rs17111479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs17111479-C	NR	1E-10		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55481831	55481832	rs17111479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs17111479-C	NR	2E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55485795	55485796	rs2495504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495504-C	NR	8E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55485795	55485796	rs2495504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495504-C	0.288	2E-6	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55485795	55485796	rs2495504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495504-C	NR	8E-12		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55485795	55485796	rs2495504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495504-C	0.288	1E-8	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55486063	55486064	rs2479394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs2479394-A	NR	3E-36		0.0331	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55486063	55486064	rs2479394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs2479394-A	NR	2E-44		0.0369	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55486063	55486064	rs2479394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs2479394-A	NR	3E-41		0.0356	[0.031-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs12117661-G	0.233083446584388	6E-14	(EA)	0.0435069	[0.032-0.055] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs12117661-?	NR	3E-6		1.867961	[1.09-2.65] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs12117661-?	NR	3E-9		2.13131	[1.43-2.84] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs12117661-C	NR	7E-26		0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs12117661-C	0.751	5E-22	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs12117661-C	NR	1E-33		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55487345	55487346	rs12117661	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs12117661-C	0.751	3E-29	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55487647	55487648	rs11588151	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	1p32.3	BSND, PCSK9	rs11588151-A	NR	6E-6		4.518	NR z score decrease	Illumina [7839440] (imputed)	N
1008	chr1	55489081	55489082	rs12739394	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p32.3	BSND	rs12739394-C	0.27884	5E-8		0.034125138	[0.022-0.046] unit increase	Affymetrix [7288503] (imputed)	N
1008	chr1	55489239	55489240	rs138483078	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs138483078-?	NR	7E-11		1.868	[1.28-2.46] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55489541	55489542	rs34232196	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p32.3	BSND, PCSK9	rs34232196-?	NR	2E-12		0.0431262	[0.031-0.055] unit decrease	Illumina [4804024] (imputed)	N
1008	chr1	55491914	55491915	rs187607506	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs187607506-?	NR	4E-22		2.338	[1.87-2.81] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55491914	55491915	rs187607506	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p32.3	PCSK9	rs187607506-?	NR	2E-20		1.97	[1.5-2.44] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55492053	55492054	rs12137712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs12137712-G	0.299136	2E-8		0.0253831	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55492053	55492054	rs12137712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs12137712-G	0.299195	6E-9		0.0260493	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55492053	55492054	rs12137712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs12137712-G	0.299195	4E-8		0.0237016	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	2E-10		0.0278446	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	2E-11		0.02991	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	4E-11		0.0290056	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	2E-10		0.0281481	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	3E-10		0.0281094	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	1E-9		0.0280051	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	9E-11		0.0285897	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	2E-11		0.0295023	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	3E-9		0.027591	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	2E-8		0.0254628	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	3E-8		0.0240672	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	1E-9		0.027814	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	1E-10		0.0279102	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	9E-9		0.0265152	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	7E-9		0.025407	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	3E-11		0.0300549	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1008	chr1	55492082	55492083	rs59784135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs59784135-A	0.303578	5E-11		0.0286953	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs11206510-C	0.179124272934518	1E-17		0.0477757	[0.037-0.059] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs11206510-C	NR	5E-84		0.0595	[0.053-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs11206510-C	NR	4E-103		0.0661	[0.06-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs11206510-C	NR	2E-95		0.0636	[0.058-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1p32.3	BSND, PCSK9	rs11206510-T	0.85	1E-8		1.07	[1.04-1.10]	Illumina [5167567] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs11206510-?	NR	1E-7		2.518439	[1.59-3.45] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p32.3	PCSK9	rs11206510-T	0.85	7E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p32.3	PCSK9	rs11206510-T	0.847627	2E-8		1.08	[1.05- 1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p32.3	PCSK9	rs11206510-T	0.82	9E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p32.3	PCSK9	rs11206510-T	0.77	1E-10		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1p32.3	PCSK9	rs11206510-T	0.81	1E-8		1.15	[1.10-1.21]	Affymetrix [~ 2500000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p32.3	PCSK9	rs11206510-C	0.19	4E-8		0.09	[0.05-0.13] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1008	chr1	55496038	55496039	rs11206510	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	1p32.3	PCSK9	rs11206510-T	0.81	4E-11		3.04	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1008	chr1	55496647	55496648	rs12739979	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	5,461 European ancestry mothers	NA	1p32.3	BSND, PCSK9	rs12739979-T	NR	1E-6		0.105	[0.064-0.146] unit increase	Illumina [7360988] (imputed)	N
1008	chr1	55496860	55496861	rs11810371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs11810371-A	NR	5E-10		0.0341	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55498797	55498798	rs7523141	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	1p32.3	NR	rs7523141-?	NR	3E-25		0.06155	[0.05-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
1008	chr1	55498948	55498949	rs7523242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs7523242-T	NR	4E-70		0.0545	[0.048-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55498948	55498949	rs7523242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs7523242-T	NR	1E-84		0.0601	[0.054-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55498948	55498949	rs7523242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs7523242-T	NR	2E-72		0.0555	[0.049-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55499155	55499156	rs7525649	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs7525649-?	NR	2E-7		2.061054	[1.29-2.84] unit increase	Illumina [32003504] (imputed)	N
1008	chr1	55499155	55499156	rs7525649	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs7525649-?	NR	1E-6		1.736545	[1.04-2.43] unit increase	Illumina [31808917] (imputed)	N
1008	chr1	55499155	55499156	rs7525649	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	1p32.3	PCSK9	rs7525649-T	0.72	3E-11		1.954	[1.39-2.52] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1008	chr1	55499155	55499156	rs7525649	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	1p32.3	PCSK9	rs7525649-T	0.72	2E-10		2.212	[1.55-2.88] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1008	chr1	55500705	55500706	rs17111495	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 23 levels	4,201 Taiwanese ancestry individuals	NA	1p32.3		rs17111495-G	0.98	1E-10		0.463	[0.32-0.6] unit increase	Affymetrix [7897704] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs17111503-G	0.24383792712837	8E-15		0.0427734	[0.032-0.054] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs17111503-G	0.24383792712837	5E-14	(EA)	0.04726	[0.035-0.06] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs17111503-?	NR	4E-18		1.737	[1.34-2.13] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p32.3	PCSK9	rs17111503-?	NR	9E-17		1.538	[1.14-1.93] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs17111503-?	NR	1E-6		2.028163	[1.21-2.85] unit increase	Illumina [32003504] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs17111503-?	NR	2E-6		1.795303	[1.06-2.53] unit increase	Illumina [31808917] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs17111503-A	NR	6E-19		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs17111503-A	0.73	5E-18	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs17111503-A	NR	1E-21		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55503447	55503448	rs17111503	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs17111503-A	0.73	6E-20	(EA)	0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p32.3		rs2479409-A	0.6251	6E-16		1.4493	[1.1-1.8] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs2479409-A	0.640258902077151	3E-7	(statin-free)	0.0567634	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs2479409-A	0.639524316109422	7E-9		0.052	[0.034-0.07] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2479409-G	0.366	9E-19	(EA)	0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2479409-G	0.366	3E-20	(EA)	0.053	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p32.3	PCSK9	rs2479409-A	0.667	1E-32	(Trans-ethnic initial)	0.054	[0.046-0.062] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p32.3	PCSK9	rs2479409-A	0.667	3E-42	(Trans-ethnic initial)	0.0642	[0.056-0.072] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p32.3	PCSK9	rs2479409-G	0.32	3E-50		0.064	[NR] unit increase	NR [NR] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p32.3	PCSK9	rs2479409-G	0.32	2E-39		0.054	[NR] unit increase	NR [NR] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p32.3	PCSK9	rs2479409-G	0.3	2E-28		2.01	[1.58-2.44] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1008	chr1	55504649	55504650	rs2479409	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p32.3	PCSK9	rs2479409-G	0.3	4E-24		1.96	[1.49-2.43] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1008	chr1	55505446	55505447	rs45448095	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs45448095-T	0.139003066271019	3E-8	(statin-free)	0.0820863	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55505446	55505447	rs45448095	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs45448095-T	0.132881155015198	4E-12		0.084	[0.06-0.108] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55505598	55505598	rs1344705474	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs1344705474-?	NR	1E-12		0.901821	[0.66-1.14] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55505598	55505598	rs1344705474	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs1344705474-?	NR	7E-18		1.07444	[0.83-1.31] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55505598	55505598	rs1344705474	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs1344705474-?	NR	4E-14		0.967205	[0.72-1.21] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55505603	55505604	rs564427867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p32.3		rs564427867-A	0.011362601	3E-51		0.7654515	[0.67-0.87] unit increase	Illumina [13429980] (imputed)	N
1008	chr1	55505603	55505604	rs564427867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	1p32.3		rs564427867-A	0.011962	4E-70		0.433922	[0.39-0.48] unit increase	Illumina [13461863] (imputed)	N
1008	chr1	55505603	55505604	rs564427867	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	1p32.3	PCSK9	rs564427867-?	NR	3E-8		0.268411	[0.17-0.36] unit increase	Illumina [19707525] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-55		0.246233	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-65		0.254105	[0.22-0.28] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982599	8E-59		0.246654	[0.22-0.28] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-89		0.303948	[0.27-0.33] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-35		0.187938	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-74		0.270634	[0.24-0.3] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-40		0.204022	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982546	9E-50		0.232351	[0.2-0.26] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-35		0.188325	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-41		0.20278	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-9		0.0938653	[0.064-0.124] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-16		0.124988	[0.095-0.155] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-12		0.109059	[0.079-0.139] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-11		0.102722	[0.073-0.133] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-26		0.157164	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-67		0.266913	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-14		0.107163	[0.079-0.135] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-28		0.169587	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-84		0.305666	[0.27-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-36		0.197244	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-68		0.275282	[0.24-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-13		0.104648	[0.076-0.133] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-40		0.206283	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-86		0.306902	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-14		0.116113	[0.086-0.146] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-83		0.302525	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-98		0.319329	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-76		0.284735	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	3E-12		0.10863	[0.078-0.139] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-68		0.265257	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	1E-13		0.109707	[0.081-0.139] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-88		0.311201	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-71		0.2722	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	5E-54		0.227522	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	1E-8		0.0882842	[0.058-0.119] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-87		0.308882	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-86		0.305326	[0.27-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	6E-28		0.167284	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982599	3E-54		0.244698	[0.21-0.28] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-74		0.272239	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-39		0.199045	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-97		0.316447	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-45		0.213601	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-64		0.261364	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-8		0.0808208	[0.053-0.109] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-56		0.247599	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-99		0.332415	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-58		0.253243	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-74		0.286793	[0.26-0.32] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-16		0.118904	[0.09-0.148] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-90		0.314459	[0.28-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-26		0.163783	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-89		0.3144	[0.28-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-103		0.327491	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	1E-8		0.0841679	[0.055-0.113] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	1E-8		0.0835336	[0.055-0.112] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	4E-27		0.165697	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	4E-10		0.0941458	[0.065-0.124] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	5E-24		0.155986	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-83		0.303215	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-68		0.273288	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982599	1E-45		0.216328	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-73		0.271361	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-17		0.128726	[0.099-0.158] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-58		0.238926	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-83		0.289129	[0.26-0.32] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-13		0.108907	[0.08-0.138] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-9		0.0814009	[0.054-0.109] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982546	3E-32		0.184283	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-34		0.182593	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	9E-49		0.214652	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-21		0.149405	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	9E-82		0.294853	[0.26-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-34		0.178287	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-78		0.294517	[0.26-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-98		0.329559	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-72		0.281851	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-86		0.309686	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-9		0.087951	[0.058-0.118] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-97		0.323486	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-36		0.195725	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-96		0.324014	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-101		0.326041	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	6E-14		0.112079	[0.083-0.141] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982536	8E-11		0.0971407	[0.068-0.126] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-76		0.285235	[0.25-0.32] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-21		0.134641	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-26		0.163232	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-81		0.300449	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-53		0.240097	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-69		0.27799	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-9		0.0877732	[0.059-0.116] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-99		0.330722	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-41		0.210914	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-92		0.32044	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-110		0.346654	[0.32-0.38] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-95		0.323797	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-48		0.215908	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982599	1E-40		0.200937	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-88		0.308006	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-59		0.238043	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982546	9E-56		0.236934	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-10		0.0927373	[0.063-0.122] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982573	2E-16		0.131079	[0.1-0.162] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	7E-18		0.1319	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-97		0.316902	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-27		0.167989	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-17		0.11885	[0.091-0.146] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	9E-62		0.259988	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-72		0.282243	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-108		0.344073	[0.31-0.37] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-60		0.257865	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-10		0.0939653	[0.065-0.122] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-29		0.17375	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-81		0.297334	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-70		0.278681	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	8E-77		0.29102	[0.26-0.32] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-93		0.31172	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-55		0.231585	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982599	9E-44		0.209061	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-92		0.310713	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	3E-24		0.160412	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-17		0.132121	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-66		0.253651	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	5E-21		0.14823	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982546	8E-57		0.244262	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	9E-33		0.181934	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-16		0.121975	[0.093-0.151] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982573	2E-9		0.0954523	[0.064-0.126] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-29		0.172523	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-94		0.314264	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-16		0.124929	[0.095-0.155] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	6E-21		0.133317	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-68		0.275018	[0.24-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-83		0.304099	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-96		0.32703	[0.3-0.36] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	4E-69		0.27701	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-9		0.0866095	[0.058-0.115] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-17		0.130846	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-86		0.306667	[0.28-0.34] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	1E-96		0.317132	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	9E-18		0.131785	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1p32.3		rs11591147-G	0.982543	2E-94		0.323815	[0.29-0.35] unit increase	NR [11722792] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK9	5,363 Icelandic ancestry individuals	NA	1p32.3		rs11591147-T	0.01176	6E-32		1.0396	[0.87-1.21] unit decrease	Illumina [7506463] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK9	5,350 Icelandic ancestry individuals	NA	1p32.3		rs11591147-T	0.01176	2E-41		1.09951	[0.94-1.26] unit decrease	Illumina [7506463] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p32.3		rs11591147-T	NR	2E-278		0.3124	[0.3-0.33] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.3		rs11591147-T	NR	6E-17		0.3174	[0.24-0.39] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p32.3		rs11591147-T	NR	9E-64		0.3623	[0.32-0.4] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p32.3		rs11591147-T	NR	2E-335		0.3485	[0.33-0.37] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1p32.3		rs11591147-T	NR	6E-12		0.2179	[0.16-0.28] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs11591147-T	0.0144343196167133	9E-49		0.29342	[0.25-0.33] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs11591147-T	0.0144343196167133	2E-46	(EA)	0.31965	[0.28-0.36] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+OAc]1- levels	13,814 British ancestry individuals	NA	1p32.3		rs11591147-T	NR	3E-10		0.207321	[0.14-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	1p32.3		rs11591147-T	0.014	4E-28		0.52		Affymetrix [15679186] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		1p32.3	PCSK9	rs11591147-G	NR	5E-13		0.039901	[0.024-0.056] nmol/l increase	NR [19000000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p32.3	PCSK9	rs11591147-G	0.984027	2E-16		1.34	[1.25-1.44]	NR [8126035] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	1p32.3	PCSK9	rs11591147-G	0.983216	8E-11		1.31	[1.21-1.42]	NR [10903881] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-T	NR	4E-494		0.4371	[0.42-0.46] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-T	NR	9E-591		0.4782	[0.46-0.5] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-T	NR	8E-521		0.4501	[0.43-0.47] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p32.3	PCSK9	rs11591147-?		2E-59		0.4533	[0.4-0.51] unit increase	Illumina [31500000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p32.3	PCSK9	rs11591147-?		2E-67		0.4795	[0.43-0.53] unit increase	Illumina [31500000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	2,835 European ancestry cases, 107,469 European ancestry controls	1p32.3	PCSK9	rs11591147-G	0.9839	6E-11		1.58	1.38-1.82	Affymetrix [18689289] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	1p32.3		rs11591147-?	0.01754	8E-12		0.01217	unit increase	NR [6200000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1p32.3		rs11591147-G	0.981959	4E-10		0.046	[0.032-0.06] unit increase	NR [7250403] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs11591147-?	NR	9E-25		0.48	[0.39-0.57] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs11591147-?	NR	4E-32		0.548	[0.46-0.64] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p32.3	PCSK9	rs11591147-G	0.982532	2E-421		0.348511	[0.33-0.36] unit increase	Affymetrix [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p32.3	PCSK9	rs11591147-G	0.982548	3E-418		0.345975	[0.33-0.36] unit increase	Affymetrix [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p32.3	PCSK9	rs11591147-G	0.982588	1E-12		0.0532417	[0.039-0.068] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-563		0.4704	[0.45-0.49] unit decrease	Affymetrix [5701386] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p32.3	PCSK9	rs11591147-T	0.011	8E-10	(EA)	0.073	[0.049-0.097] unit decrease	Affymetrix [13250765] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	9E-18	(Remnant_C)	0.0823401	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	9E-16	(XS_VLDL_P)	0.06311606	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	9E-11	(M_HDL_C)	0.05538142	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	8E-20	(M_LDL_PL)	0.066583015	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	8E-19	(S_HDL_PL)	0.09666114	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	8E-16	(IDL_C)	0.101447664	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-26	(L_LDL_L)	0.08650212	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-25	(L_LDL_CE)	0.08232603	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-20	(S_LDL_C)	0.06511056	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	6E-11	(VLDL_C)	0.049032982	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	5E-20	(M_LDL_C)	0.06443847	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	5E-18	(ApoB)	0.06261891	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	5E-17	(IDL_L)	0.09798073	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	5E-11	(M_HDL_CE)	0.055473983	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-23	(FreeC)	0.09172767	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-22	(L_LDL_PL)	0.06969179	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-20	(M_LDL_FC)	0.067575164	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-20	(IDL_FC)	0.09586883	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-17	(M_LDL_P)	0.06315279	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-16	(ApoB_ApoA1)	0.07213569	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-12	(XS_VLDL_CE)	0.079863556	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-10	(XS_VLDL_FC)	0.076375164	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-23	(L_LDL_P)	0.07225063	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-21	(IDL_P)	0.101035945	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-17	(M_HDL_PL)	0.070111126	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-16	(L_LDL_C)	0.09282211	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-13	(XS_VLDL_C)	0.090329915	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-21	(IDL_PL)	0.10510873	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-19	(S_LDL_L)	0.054627746	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-18	(M_LDL_CE)	0.05720689	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-17	(M_HDL_P)	0.074171774	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-16	(M_LDL_L)	0.07088224	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-14	(XS_VLDL_L)	0.07545552	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-13	(S_LDL_FC)	0.053519048	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-24	(L_LDL_FC)	0.093113914	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-24	(LDL_C)	0.0731577	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-18	(Serum_C)	0.07048526	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-17	(IDL_CE)	0.10599908	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-16	(XS_VLDL_PL)	0.066919476	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-16	(S_LDL_P)	0.05168364	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-12	(S_VLDL_CE)	0.06434394	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-10	(L_LDL_TG)	0.049240064	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	9E-8	(S_VLDL_CE)	0.07932203	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	8E-12	(XS_VLDL_PL)	0.081472576	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	8E-10	(L_LDL_CE)	0.09094943	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-7	(M_LDL_FC)	0.0735147	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-6	(ApoB_ApoA1)	0.06626444	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-14	(IDL_C)	0.11047237	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-13	(S_HDL_PL)	0.08888055	NR unit increase	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	7E-10	(L_LDL_L)	0.09137215	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	6E-11	(FreeC)	0.09691767	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-9	(XS_VLDL_P)	0.07191426	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-6	(S_LDL_C)	0.06872299	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-13	(IDL_P)	0.107789345	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-13	(IDL_FC)	0.107046075	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-11	(L_LDL_FC)	0.09737745	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-10	(XS_VLDL_C)	0.091919355	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	4E-10	(L_LDL_PL)	0.09261733	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-8	(Serum_C)	0.08225315	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-8	(Remnant_C)	0.08128867	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-6	(M_LDL_PL)	0.06926624	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-6	(M_LDL_P)	0.06904491	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-6	(ApoB)	0.06899652	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	3E-10	(L_LDL_C)	0.09339385	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-8	(LDL_C)	0.08388951	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-7	(XS_VLDL_FC)	0.07703123	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-6	(M_LDL_L)	0.07026635	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-13	(IDL_PL)	0.10846748	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-13	(IDL_L)	0.1093784	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	2E-10	(XS_VLDL_CE)	0.09421623	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-9	(L_LDL_P)	0.08981017	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-8	(XS_VLDL_L)	0.0835896	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-6	(M_LDL_CE)	0.0714336	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-6	(M_LDL_C)	0.072261296	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs11591147-?	NR	1E-13	(IDL_CE)	0.10913579	NR unit decrease	Illumina [609262]	N
1008	chr1	55505646	55505647	rs11591147	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs11591147-?	NR	9E-25		21.17191	[17.13-25.21] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs11591147-?	NR	4E-32		21.51406	[17.94-25.09] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p32.3	PCSK9	rs11591147-T	0.017203	9E-64		0.362324	[0.32-0.4] unit decrease	Affymetrix [7288503] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p32.3		rs11591147-T	0.0159	1E-51	(EA)	14.3865	[12.52-16.25] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p32.3	PCSK9	rs11591147-T	NR	4E-171				Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p32.3	PCSK9	rs11591147-T	NR	3E-176	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p32.3	PCSK9	rs11591147-T	NR	6E-169				Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p32.3	PCSK9	rs11591147-T	NR	2E-175	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p32.3	PCSK9	rs11591147-T	NR	2E-97		16.37	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p32.3	PCSK9	rs11591147-T	NR	1E-101	(EA)	16.42	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p32.3	PCSK9	rs11591147-T	NR	9E-50		16.1	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p32.3	PCSK9	rs11591147-T	NR	7E-52	(EA)	16.48	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	1p32.3	NR	rs11591147-T	0.0194	6E-158				Affymetrix, Illumina [at least 2500000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p32.3		rs11591147-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	PCSK9	rs11591147-T	0.015	8E-175		0.325	[0.3-0.35] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	PCSK9	rs11591147-T	0.0149	3E-257		0.3952	[0.37-0.42] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	1p32.3	PCSK9	rs11591147-T	0.018	2E-12				Affymetrix [28000000] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs11591147-T	0.0123626399604352	6E-16	(statin-free)	0.374259	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p32.3	PCSK9	rs11591147-T	0.0121655389057751	2E-17		0.315	[0.24-0.39] unit decrease	Affymetrix [9882017] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	NR	5E-11		0.458	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	0.989	9E-11	(Hispanic)	0.464	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	0.987	5E-56	(EA)	0.413	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	NR	3E-12		0.493	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	0.989	2E-12	(Hispanic)	0.507	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11591147-G	0.987	6E-70	(EA)	0.475	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the knee (with total joint replacement)	2,188 European ancestry cases, 9,939 European ancestry healthy controls	2,281 European ancestry cases, 9,194 European ancestry healthy controls	1p32.3	NR	rs11591147-T	0.017137	9E-6		1.56	[1.25-1.95]	Illumina [270934]	N
1008	chr1	55505646	55505647	rs11591147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p32.3	PCSK9	rs11591147-T	0.0164	2E-22		0.2406	[0.19-0.29] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p32.3	PCSK9	rs11591147-T	0.0163	2E-25		0.2821	[0.23-0.34] unit decrease	NR [8041861] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p32.3	PCSK9	rs11591147-T	0.016	2E-25		0.282	[0.23-0.33] unit decrease	Affymetrix [7947838] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1p32.3	PCSK9	rs11591147-G	0.984	3E-10		1.25	[1.16-1.34]	Affymetrix [9149595] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	1p32.3	PCSK9	rs11591147-T	0.0169	2E-17		0.36090583	[0.28-0.44] mg/dl decrease	Illumina [24111857] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	1p32.3	NR	rs11591147-?	NR	3E-61	(Free cholesterol in large LDL, conditioned)	0.5335034	[0.47-0.60] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p32.3	PCSK9	rs11591147-G	0.98	2E-92		0.528	[0.48-0.58] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1008	chr1	55505646	55505647	rs11591147	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	LDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	1p32.3	PCSK9	rs11591147-?	0.0154	3E-59	(EA)	17.0	mg/dl decrease	Illumina [247644]	N
1008	chr1	55505646	55505647	rs11591147	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	1p32.3	PCSK9	rs11591147-?	NR	5E-9	(baseline LDL-C)	5.0	[3.43-6.57] mg/dL decrease	Illumina [814418]	N
1008	chr1	55505646	55505647	rs11591147	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	1p32.3	PCSK9	rs11591147-T	0.01	2E-44		0.47	[0.41-0.53] unit decrease	Affymetrix [389878]	N
1008	chr1	55505667	55505668	rs11583680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs11583680-T	NR	2E-12		0.0244	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55505667	55505668	rs11583680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs11583680-T	NR	1E-13		0.0257	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55505667	55505668	rs11583680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs11583680-T	NR	1E-11		0.0236	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1p32.3		rs151193009-T	0.009536	8E-90		0.370961	[0.33-0.41] unit decrease	Illumina [13476599] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.3		rs151193009-T	0.010380876	9E-10		0.43466696	[0.3-0.57] unit decrease	Illumina [13427135] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	1p32.3		rs151193009-T	NR	4E-9		0.3746	[0.25-0.5] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	1p32.3		rs151193009-T	0.009825896	4E-9		0.37461728	[0.25-0.5] unit decrease	Illumina [13429980] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	1p32.3		rs151193009-T	NR	7E-11		0.2847	[0.2-0.37] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	1p32.3		rs151193009-T	0.009825896	7E-11		0.28474963	[0.2-0.37] unit decrease	Illumina [13429980] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	1p32.3		rs151193009-T	NR	2E-8		0.2302	[0.15-0.31] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	1p32.3		rs151193009-T	0.009825896	2E-8		0.23020092	[0.15-0.31] unit decrease	Illumina [13429980] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	1p32.3	PCSK9	rs151193009-?	NR	1E-14		0.447667	[0.33-0.56] unit decrease	Illumina [19707525] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p32.3	PCSK9	rs151193009-T	0.013	8E-14		19.4039	[14.33-24.48] unit decrease	Affymetrix [at least 805769] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p32.3	PCSK9	rs151193009-T	0.013	6E-17		0.1827	[0.14-0.23] unit decrease	Affymetrix [at least 805769] (imputed)	N
1008	chr1	55509584	55509585	rs151193009	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total cholesterol levels	12,685 Chinese ancestry individuals	NA	1p32.3	PCSK9	rs151193009-T	0.013	5E-25		0.56	[0.46-0.66] unit decrease	Illumina [286795]	N
1008	chr1	55509584	55509585	rs151193009	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	LDL cholesterol levels	12,685 Chinese ancestry individuals	NA	1p32.3	PCSK9	rs151193009-T	0.013	8E-32		0.64	[0.54-0.74] unit decrease	Illumina [286795]	N
1008	chr1	55510970	55510971	rs45530931	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs45530931-C	0.131189956135524	2E-6	(EA)	0.0355836	[0.021-0.05] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55512221	55512222	rs67608943	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs67608943-?	NR	5E-13		0.978	[0.71-1.24] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55512221	55512222	rs67608943	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs67608943-?	NR	5E-9		33.92868	[22.57-45.29] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55512221	55512222	rs67608943	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs67608943-?	NR	5E-13		38.40408	[28.01-48.8] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55512266	55512267	rs143117125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs143117125-?	NR	8E-11		0.68637	[0.48-0.89] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55512266	55512267	rs143117125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs143117125-?	NR	2E-14		0.787279	[0.58-0.99] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55512266	55512267	rs143117125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs143117125-?	NR	3E-16		0.81484	[0.61-1.02] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55512994	55512995	rs2495478	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	1p32.3	NR	rs2495478-T	0.04	1E-7		1.4	[1.15-1.72]	Illumina [599255]	N
1008	chr1	55513060	55513061	rs10888897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs10888897-C	NR	2E-54		0.0379	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55513060	55513061	rs10888897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs10888897-C	NR	5E-63		0.0409	[0.036-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55513060	55513061	rs10888897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs10888897-C	NR	5E-56		0.0385	[0.034-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55513182	55513183	rs41294821	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p32.3		rs41294821-C	0.976936	4E-8		0.0752392	[0.048-0.102] unit increase	NR [11722792] (imputed)	N
1008	chr1	55517300	55517301	rs45576433	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	1p32.3	PCSK9	rs45576433-?	NR	1E-23		0.0619	[0.05-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1008	chr1	55517882	55517883	rs624612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs624612-G	NR	7E-25		0.0249	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55517882	55517883	rs624612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs624612-G	NR	2E-25		0.0252	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55517882	55517883	rs624612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs624612-G	NR	2E-21		0.023	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr1	55518084	55518085	rs142824171	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs142824171-?	NR	3E-21		0.812618	[0.64-0.98] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518084	55518085	rs142824171	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs142824171-?	NR	2E-28		0.939204	[0.77-1.11] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518084	55518085	rs142824171	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs142824171-?	NR	4E-26		0.886329	[0.72-1.06] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518092	55518093	rs11800243	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs11800243-G	0.961	4E-6	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55518159	55518160	rs11806638	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs11806638-?	NR	1E-9		3.266727	[2.21-4.32] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55518159	55518160	rs11806638	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs11806638-?	NR	2E-13		3.59404	[2.63-4.55] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55518373	55518374	rs148195424	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs148195424-?	NR	6E-41		0.396364	[0.34-0.46] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518373	55518374	rs148195424	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs148195424-?	NR	8E-51		0.44659	[0.39-0.51] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518373	55518374	rs148195424	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs148195424-?	NR	2E-52		0.437477	[0.38-0.5] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55518421	55518422	rs72646508	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs72646508-?	NR	4E-6		22.31186	[12.87-31.76] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55518421	55518422	rs72646508	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	PCSK9	rs72646508-T	0.0032	7E-29	(AA)	0.583	[0.48-0.68] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1008	chr1	55518421	55518422	rs72646508	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	PCSK9	rs72646508-T	0.0032	5E-36	(AA)	0.656	[0.55-0.76] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs2495477-G	0.404953877053691	1E-23		0.0457846	[0.037-0.055] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs2495477-G	0.404953877053691	9E-22	(EA)	0.0495318	[0.039-0.06] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p32.3	PCSK9	rs2495477-?	NR	1E-20		1.606	[1.25-1.96] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs2495477-?	NR	5E-15	(EstC)	0.079501994	NR unit decrease	Illumina [609262]	N
1008	chr1	55518466	55518467	rs2495477	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs2495477-?	NR	6E-8	(EstC)	0.07981022	NR unit decrease	Illumina [609262]	N
1008	chr1	55518466	55518467	rs2495477	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs2495477-?	NR	5E-10		2.356096	[1.61-3.1] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs2495477-?	NR	1E-11		2.308478	[1.64-2.97] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495477-A	NR	1E-6		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495477-A	0.625	3E-21	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495477-A	NR	2E-8		0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495477-A	0.65	3E-6	(Hispanic)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55518466	55518467	rs2495477	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs2495477-A	0.625	2E-23	(EA)	0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55519014	55519015	rs639750	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs639750-?	NR	4E-6		0.04	[0.022-0.058] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55519173	55519174	rs499883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs499883-G	0.385361	3E-9		0.0255897	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55520407	55520408	rs553741	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs553741-?	NR	6E-23		1.681	[1.33-2.03] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs693668-G	0.351332	9E-10		0.0256452	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	8E-15		0.0323456	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	6E-12		0.0280047	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	3E-12		0.0290525	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	2E-13		0.0304897	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	4E-14		0.0315853	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	2E-15		0.0340431	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs693668-G	0.351332	7E-9		0.0242126	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	1E-12		0.0291592	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	3E-13		0.0300474	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	2E-12		0.0300621	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	3E-10		0.0254338	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs693668-G	0.351332	4E-8		0.0226725	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	1E-14		0.0323932	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs693668-G	0.351451	4E-11		0.0268151	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521108	55521109	rs693668	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK9	5,363 Icelandic ancestry individuals	NA	1p32.3		rs693668-G	0.3561	6E-21		0.185232	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
1008	chr1	55521108	55521109	rs693668	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs693668-?	NR	1E-13		0.062	[0.046-0.078] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55521108	55521109	rs693668	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs693668-?	NR	6E-10	(XL_HDL_FC)	0.07494798	NR unit decrease	Illumina [609262]	N
1008	chr1	55521108	55521109	rs693668	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs693668-?	NR	2E-10	(XXL_VLDL_CE)	0.046918333	NR unit decrease	Illumina [609262]	N
1008	chr1	55521108	55521109	rs693668	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p32.3	PCSK9	rs693668-?	NR	2E-6	(XL_HDL_FC)	0.069265686	NR unit decrease	Illumina [609262]	N
1008	chr1	55521108	55521109	rs693668	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		1p32.3		rs693668-G	0.35	9E-8		1.57	[1.00-2.14] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1008	chr1	55521108	55521109	rs693668	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p32.3	PCSK9	rs693668-G	0.350319	7E-17		0.048941478	[0.037-0.06] unit decrease	Affymetrix [7288503] (imputed)	N
1008	chr1	55521194	55521195	rs12136600	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	1p32.3	NR	rs12136600-?	NR	4E-20		0.07746	[0.061-0.094] unit decrease novel	Illumina [6108953] (imputed)	N
1008	chr1	55521241	55521242	rs471705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs471705-T	0.361203	5E-9		0.0241567	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521241	55521242	rs471705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs471705-T	0.361203	2E-8		0.0238684	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521241	55521242	rs471705	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p32.3		rs471705-T	0.361203	2E-8		0.0237225	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-12		0.0286279	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-10		0.0271412	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	9E-11		0.0271847	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	8E-10		0.0254697	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-14		0.0328227	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-13		0.0304744	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-17		0.0365671	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	6E-14		0.0307924	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-11		0.0269116	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-19		0.0387768	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-18		0.0373957	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-18		0.0375637	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-17		0.0358474	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	5E-18		0.0372164	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	2E-9		0.0241481	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	6E-20		0.0391713	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-10		0.0263738	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	1E-12		0.0298016	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs472495-G	0.350879	5E-17		0.0361129	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55521312	55521313	rs472495	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK9	5,350 Icelandic ancestry individuals	NA	1p32.3		rs472495-G	0.3556	2E-25		0.190606	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
1008	chr1	55521312	55521313	rs472495	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p32.3	PCSK9	rs472495-G	0.351043	6E-85		0.0426246	[0.038-0.047] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr1	55521312	55521313	rs472495	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p32.3	PCSK9	rs472495-G	0.350983	1E-78		0.0408252	[0.037-0.045] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr1	55523801	55523802	rs28362261	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs28362261-?	NR	1E-7		0.244	[0.15-0.33] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55523801	55523802	rs28362261	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs28362261-?	NR	1E-7		10.77947	[6.79-14.77] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55523801	55523802	rs28362261	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs28362261-?	NR	3E-7		9.644478	[5.95-13.34] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs28362263-?	NR	9E-22		0.218	[0.17-0.26] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs28362263-?	NR	5E-26		0.025	[-0.02204-0.07204] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs28362263-?	NR	9E-22		9.618442	[7.65-11.58] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs28362263-?	NR	4E-26		9.789311	[7.97-11.61] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p32.3	PCSK9	rs28362263-A	0.011	3E-9	(Hispanic)	0.281	[0.19-0.37] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs28362263-G	NR	4E-7		0.233	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs28362263-G	0.922	5E-7	(AA)	0.241	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs28362263-G	NR	5E-9		0.276	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55523854	55523855	rs28362263	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs28362263-G	0.922	5E-8	(AA)	0.26	unit increase	Affymetrix [at least 7091467] (imputed)	N
1008	chr1	55524200	55524201	rs746115963	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs746115963-?	NR	6E-22		0.580314	[0.46-0.7] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55524200	55524201	rs746115963	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs746115963-?	NR	4E-26		0.643837	[0.53-0.76] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55524200	55524201	rs746115963	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs746115963-?	NR	1E-25		0.609817	[0.5-0.72] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55524308	55524309	rs145468572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs145468572-?	NR	2E-30		0.686474	[0.57-0.81] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55524308	55524309	rs145468572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs145468572-?	NR	1E-35		0.73929	[0.62-0.86] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55524308	55524309	rs145468572	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs145468572-?	NR	1E-34		0.706243	[0.59-0.82] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-10		0.0736612	[0.051-0.096] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-11		0.0758481	[0.054-0.098] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-15		0.0922566	[0.07-0.115] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-8		0.0655556	[0.043-0.088] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-14		0.0890877	[0.066-0.112] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-9		0.0689677	[0.047-0.091] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-17		0.0954747	[0.073-0.118] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-16		0.0947667	[0.072-0.117] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	6E-17		0.093435	[0.072-0.115] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	4E-15		0.0886286	[0.067-0.111] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-14		0.0845389	[0.063-0.106] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-16		0.0948412	[0.072-0.117] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-14		0.0861967	[0.064-0.108] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-15		0.0908334	[0.068-0.113] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-10		0.0731175	[0.051-0.095] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-12		0.0790456	[0.056-0.102] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	9E-12		0.0786132	[0.056-0.101] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-15		0.0915262	[0.069-0.114] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	4E-17		0.0966583	[0.074-0.119] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	5E-17		0.0968261	[0.074-0.119] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-17		0.0947171	[0.073-0.117] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966984	3E-8		0.062322	[0.04-0.084] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966984	3E-8		0.0629244	[0.041-0.085] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	9E-17		0.0956948	[0.073-0.118] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	5E-13		0.081761	[0.06-0.104] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	9E-15		0.0894919	[0.067-0.112] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-13		0.0853178	[0.063-0.108] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	5E-17		0.0968757	[0.074-0.12] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-12		0.079274	[0.057-0.102] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	9E-14		0.086182	[0.064-0.109] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	8E-11		0.0748522	[0.052-0.097] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-14		0.0880676	[0.065-0.111] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-8		0.0650274	[0.043-0.087] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-16		0.0959294	[0.073-0.119] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-17		0.0955242	[0.073-0.118] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-17		0.0984287	[0.076-0.121] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	3E-15		0.0879939	[0.066-0.11] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-11		0.078012	[0.055-0.101] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	4E-14		0.0873361	[0.065-0.11] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-13		0.0853433	[0.063-0.108] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-16		0.0948246	[0.072-0.117] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-12		0.0820564	[0.059-0.105] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	5E-16		0.0934481	[0.071-0.116] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	1E-16		0.0925881	[0.071-0.114] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	8E-15		0.0870388	[0.065-0.109] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-13		0.0828308	[0.06-0.105] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-16		0.0933702	[0.071-0.116] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-15		0.0901972	[0.068-0.113] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	5E-17		0.0959847	[0.074-0.118] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	7E-17		0.0931447	[0.071-0.115] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1p32.3		rs11206517-T	0.966988	2E-16		0.0952718	[0.073-0.118] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p32.3	PCSK9	rs11206517-T	0.96685	6E-32		0.0683407	[0.057-0.08] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p32.3	PCSK9	rs11206517-T	0.96683	2E-32		0.0685214	[0.057-0.08] unit decrease	Affymetrix [NR] (imputed)	N
1008	chr1	55526427	55526428	rs11206517	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs11206517-?	NR	1E-16		3.169	[2.42-3.92] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1008	chr1	55527229	55527230	rs765335983	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p32.3		rs765335983-?	NR	1E-56		0.881191	[0.77-0.99] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55527229	55527230	rs765335983	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p32.3		rs765335983-?	NR	5E-68		0.981343	[0.87-1.09] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55527229	55527230	rs765335983	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.3		rs765335983-?	NR	2E-64		0.926848	[0.82-1.04] unit decrease	NR [9800000] (imputed)	N
1008	chr1	55528628	55528629	rs12067569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1p32.3		rs12067569-G	0.971866	5E-11		0.0771528	[0.054-0.1] unit decrease	NR [11722792] (imputed)	N
1008	chr1	55529186	55529187	rs505151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs505151-A	NR	2E-40		0.0865	[0.074-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs505151-A	NR	1E-50		0.0974	[0.085-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs505151-A	NR	5E-46		0.0928	[0.08-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p32.3	PCSK9	rs505151-A	0.94	3E-8	(Asian initial, BMI unadjusted)	0.103	[0.068-0.138] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	1p32.3	PCSK9	rs505151-A	0.94	4E-6	(BMI unadjusted)	0.102	[0.059-0.145] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p32.3	PCSK9	rs505151-A	0.94	9E-9	(Asian initial, BMI unadjusted)	0.107	[0.072-0.142] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1008	chr1	55529186	55529187	rs505151	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	1p32.3	PCSK9	rs505151-A	0.94	8E-7	(BMI unadjusted)	0.11	[0.067-0.153] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Apolipoprotein B levels	9,354 African ancestry individuals	186 African American or Afro-Caribbean individuals	1p32.3	PCSK9	rs28362286-A	0.09	3E-20		0.75	unit decrease	NR [NR] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs28362286-?	NR	5E-39		0.97	[0.82-1.12] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs28362286-?	NR	3E-42		1.071	[0.92-1.23] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Total cholesterol levels	14,126 African ancestry individuals	NA	1p32.3		rs28362286-C	0.998	1E-37		0.793986	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	LDL cholesterol levels	14,126 African ancestry individuals	NA	1p32.3		rs28362286-C	0.998	2E-42		0.847548	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs28362286-?	NR	5E-39		42.79528	[36.38-49.21] unit decrease	Illumina [32003504] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs28362286-?	NR	3E-42		42.04118	[35.99-48.09] unit decrease	Illumina [31808917] (imputed)	N
1008	chr1	55529214	55529215	rs28362286	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	LDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	1p32.3	PCSK9	rs28362286-?	0.0087	2E-57	(AA)	40.0	mg/dl decrease	Illumina [247644]	N
1008	chr1	55538551	55538552	rs10493176	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs10493176-G	0.0949582350444147	4E-14		0.0551083	[0.041-0.069] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1008	chr1	55552272	55552273	rs72911441	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	1p32.3		rs72911441-?	NR	7E-12		0.12	[0.085-0.155] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr1	55569439	55569440	rs2274538	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p32.3	PCSK9	rs2274538-?	NR	2E-18		2.974	[2.28-3.67] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1009	chr1	55583209	55583210	rs530804537	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Total cholesterol levels x fish oil supplementation interaction (2df)	73,962 European ancestry individuals	7,283 European ancestry individuals	1p32.3	USP24	rs530804537-A	0.0113	2E-20				Affymetrix [7953515] (imputed)	N
1009	chr1	55583209	55583210	rs530804537	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (2df)	73,832 European ancestry individuals	7,180 European ancestry individuals	1p32.3	USP24	rs530804537-A	0.011	3E-31				Affymetrix [7953137] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p32.3	PCSK9	rs191448950-G	0.98890625	8E-21	(PCSK9, 5231_79_3)	1.0686159	[0.85-1.29] unit increase	Illumina [> 1000000] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p32.3	PCSK9	rs191448950-G	0.98890625	1E-17	(PCSK9, 8246_9_3)	1.0088907	[0.78-1.24] unit increase	Illumina [> 1000000] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs191448950-G	NR	5E-29		0.338	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs191448950-G	0.994	1E-27	(EA)	0.339	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs191448950-G	NR	3E-36		0.388	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs191448950-G	0.994	6E-35	(EA)	0.394	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	1p32.3	PCSK9	rs191448950-A	0.02	5E-56	(Free cholesterol in large LDL)	0.5	[0.44-0.56] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1009	chr1	55584843	55584844	rs191448950	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1p32.3	PCSK9	rs191448950-G	0.99	6E-73		0.468	[0.42-0.52] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1009	chr1	55590464	55590465	rs17111652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs17111652-C	0.961561	3E-10		0.067051	[0.046-0.088] unit increase	NR [11722792] (imputed)	N
1009	chr1	55590464	55590465	rs17111652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p32.3		rs17111652-C	0.961495	5E-9		0.062759	[0.042-0.084] unit decrease	NR [11722792] (imputed)	N
1009	chr1	55590464	55590465	rs17111652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs17111652-C	0.961561	5E-9		0.0600461	[0.04-0.08] unit decrease	NR [11722792] (imputed)	N
1009	chr1	55590464	55590465	rs17111652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p32.3		rs17111652-C	0.961561	1E-9		0.0640337	[0.043-0.085] unit decrease	NR [11722792] (imputed)	N
1009	chr1	55590464	55590465	rs17111652	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	1p32.3	USP24	rs17111652-T	0.0475	9E-8	(O'Connor Slope)	0.071	[NR] unit decrease	Illumina [546355]	N
1009	chr1	55590464	55590465	rs17111652	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	1p32.3	USP24	rs17111652-T	0.047	5E-7	(Categorical PC20)	0.234	[NR] unit decrease	Illumina [546355]	N
1009	chr1	55602762	55602763	rs4927194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs4927194-T	NR	3E-17		0.0653	[0.05-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55602762	55602763	rs4927194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs4927194-T	NR	5E-19		0.0689	[0.054-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55602762	55602763	rs4927194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs4927194-T	NR	5E-15		0.0606	[0.046-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55624063	55624064	rs771223692	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p32.3	USP24	rs771223692-T	0.997	2E-6		1.6956	[1-2.39] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1009	chr1	55625547	55625548	rs17111684	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p32.3	NR	rs17111684-?	NR	7E-13		6.26135	[4.55-7.97] unit decrease	Illumina [32003504] (imputed)	N
1009	chr1	55625547	55625548	rs17111684	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p32.3	NR	rs17111684-?	NR	5E-15		6.306778	[4.73-7.88] unit decrease	Illumina [31808917] (imputed)	N
1009	chr1	55625547	55625548	rs17111684	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	1p32.3	PCSK9	rs17111684-A	0.12	2E-17	(AA)	9.01	[NR] unit decrease	Affymetrix [NR]	N
1009	chr1	55631649	55631650	rs17111697	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs17111697-?	NR	2E-13		2.77	[2.01-3.53] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1009	chr1	55636239	55636240	rs72660594	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs72660594-C	NR	8E-79		0.199	[0.18-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55636239	55636240	rs72660594	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs72660594-C	NR	7E-87		0.2093	[0.19-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55636239	55636240	rs72660594	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs72660594-C	NR	9E-74		0.1928	[0.17-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr1	55645858	55645859	rs113353280	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	1p32.3		rs113353280-A	NR	8E-6	(GLM)	5.8417	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1009	chr1	55648687	55648688	rs12143028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs12143028-C	NR	7E-17		0.0287	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55648687	55648688	rs12143028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs12143028-C	NR	5E-20		0.0315	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55648687	55648688	rs12143028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs12143028-C	NR	2E-17		0.0293	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55656074	55656075	rs287227	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs287227-G	NR	5E-28		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55656074	55656075	rs287227	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs287227-G	0.866	3E-26	(EA)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55656074	55656075	rs287227	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs287227-G	NR	2E-29		0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55656074	55656075	rs287227	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p32.3	NR	rs287227-G	0.866	1E-28	(EA)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1009	chr1	55699160	55699161	rs116378305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs116378305-T	NR	2E-13		0.0941	[0.069-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55699160	55699161	rs116378305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs116378305-T	NR	2E-13		0.0934	[0.068-0.118] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55699160	55699161	rs116378305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs116378305-T	NR	1E-11		0.0865	[0.061-0.112] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr1	55703775	55703776	rs112339942	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p32.3	RP11-101C11.1	rs112339942-G	0.0454208	2E-9		0.08110697	[0.055-0.107] unit increase	Affymetrix [7288503] (imputed)	N
1010	chr1	55716496	55716497	rs2647286	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p32.3	PCSK9	rs2647286-?	NR	3E-17		1.732	[1.33-2.13] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1010	chr1	55718707	55718708	rs17413465	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p32.3	MIR4422HG	rs17413465-A	0.1824	1E-15		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1010	chr1	55718707	55718708	rs17413465	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p32.3	MIR4422HG	rs17413465-A	0.1842	8E-15		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1010	chr1	55719010	55719011	rs2802867	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p32.3	PCSK9	rs2802867-?	NR	4E-22		1.579	[1.18-1.97] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1010	chr1	55720336	55720337	rs59613675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs59613675-G	NR	9E-34		0.0399	[0.033-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55720336	55720337	rs59613675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs59613675-G	NR	2E-39		0.0433	[0.037-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55720336	55720337	rs59613675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs59613675-G	NR	8E-36		0.0413	[0.035-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55722888	55722889	rs9645418	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1p32.3	MIR4422	rs9645418-T	0.221	1E-6		0.002	[0.00082-0.00318] unit increase	Affymetrix [NR] (imputed)	N
1010	chr1	55725044	55725045	rs116264584	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs116264584-C	0.0365222949440408	6E-13	(EA)	0.0964639	[0.07-0.123] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1010	chr1	55726518	55726519	rs10888908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs10888908-C	NR	4E-23		0.0437	[0.035-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr1	55726518	55726519	rs10888908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs10888908-C	NR	4E-28		0.0486	[0.04-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr1	55726518	55726519	rs10888908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs10888908-C	NR	6E-27		0.0476	[0.039-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr1	55736662	55736663	rs61773917	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	1p32.3		rs61773917-A	0.0698593102193224	8E-8		0.0444111	[0.028-0.061] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1010	chr1	55736662	55736663	rs61773917	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p32.3		rs61773917-A	0.0698593102193224	2E-6	(EA)	0.0452349	[0.027-0.064] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1010	chr1	55740083	55740084	rs72664414	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	1p32.3	Intergenic	rs72664414-C		6E-6		4.4025	[2.5-6.31] unit decrease	Illumina [7576458] (imputed)	N
1010	chr1	55742836	55742837	rs12239436	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	1p32.3	intergenic	rs12239436-A	0.14	5E-6		0.0928	[0.053-0.133] unit increase	Affymetrix [~ 2740000] (imputed)	N
1010	chr1	55766149	55766150	rs34480710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p32.3	NR	rs34480710-T	NR	6E-16		0.0425	[0.032-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55766149	55766150	rs34480710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p32.3	NR	rs34480710-T	NR	8E-19		0.0465	[0.036-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55766149	55766150	rs34480710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p32.3	NR	rs34480710-T	NR	2E-17		0.0447	[0.034-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1010	chr1	55793433	55793434	rs2802887	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	1p32.3	USP24	rs2802887-A	0.08447955209347624	2E-6	(EA)	0.3963	[0.23-0.56] unit decrease	Illumina [at least 988306] (imputed)	N
1010	chr1	55808142	55808143	rs207145	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts (age at onset)	5,503 European, Black, and other ancestry cases age 50 and older	NA	1p32.3	LOC645506, GOT2L1	rs207145-T	0.1237	8E-6		0.6722	[NR] unit decrease	Illumina [530101]	N
1011	chr1	55903442	55903443	rs7516169	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	1p32.3	NR	rs7516169-A	0.4073	7E-7		0.4306	[0.23-0.63] unit increase	Illumina [at least 567677] (imputed)	N
1011	chr1	55903578	55903579	rs12724160	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1p32.3		rs12724160-?	NR	3E-8		0.529	[0.34-0.72] unit decrease	Affymetrix [NR] (imputed)	N
1011	chr1	55906066	55906067	rs4463718	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1p32.3	NR	rs4463718-G	NR	1E-6		0.262495	[0.16-0.37] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1011	chr1	55953104	55953105	rs390026	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p32.3	NR	rs390026-G	0.086	5E-7	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1011	chr1	55958029	55958030	rs1998013	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	1p32.3	USP24, PCSK9	rs1998013-?	0.02	5E-13				Illumina [~ 2000000] (imputed)	N
1012	chr1	56012271	56012272	rs356105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p32.3	NR	rs356105-T	0.652092	1E-15		0.018797776	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr1	56012271	56012272	rs356105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p32.3		rs356105-T	0.652209	3E-16		0.01922618	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr1	56012271	56012272	rs356105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p32.3		rs356105-T	0.652219	4E-17		0.01974974	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr1	56022313	56022314	rs12747143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p32.3	NR	rs12747143-T	0.33529	6E-14		0.017837046	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr1	56060950	56060951	rs10888935	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	1p32.3	intergenic	rs10888935-?	NR	7E-7	(Interleukin-6)			Affymetrix [2543887] (imputed)	N
1012	chr1	56072194	56072195	rs17451237	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p32.2	PCSK9	rs17451237-?	NR	5E-6	(argininosuccinate)	0.39027146	[0.22-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1013	chr1	56099370	56099371	rs6700588	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.2		rs6700588-A	0.25	1E-12		7.09	z score increase	Affymetrix [9061022] (imputed)	N
1013	chr1	56099370	56099371	rs6700588	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p32.2	NR	rs6700588-A	0.2728	2E-12				NR [9056863] (imputed)	N
1013	chr1	56101821	56101822	rs1392140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p32.2		rs1392140-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1013	chr1	56103658	56103659	rs1039296	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p32.2		rs1039296-A	0.25	5E-18		8.65	z score increase	Affymetrix [9061022] (imputed)	N
1013	chr1	56108603	56108604	rs1165472	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		1p32.2	RP11-466L17.1	rs1165472-G	0.30	4E-6		2.36	[1.64-3.40]	Illumina [518577]	N
1013	chr1	56112773	56112774	rs10443215	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	1p32.2	LOC100507652	rs10443215-C	0.04	9E-6	(Allelic)	9.39	[2.77-31.8]	Illumina [555600]	N
1013	chr1	56116504	56116505	rs72669744	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	1p32.2	PCSK9	rs72669744-?	NR	1E-19	(L-LDL-FC)	0.59	[0.47-0.71] unit decrease	Illumina [~ 7700000] (imputed)	N
1013	chr1	56116512	56116513	rs1514134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.2		rs1514134-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1013	chr1	56133675	56133676	rs9436980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p32.2		rs9436980-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1013	chr1	56155542	56155543	rs6669971	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	1p32.2		rs6669971-?	NR	8E-10				NR [9705931] (imputed)	N
1013	chr1	56160903	56160904	rs12566150	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p32.2	NR	rs12566150-C	0.2249	2E-11				NR [9056863] (imputed)	N
1013	chr1	56169574	56169575	rs75467557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	1p32.2		rs75467557-T	0.03	6E-6				Affymetrix [9061022] (imputed)	N
1013	chr1	56169574	56169575	rs75467557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p32.2		rs75467557-T	0.03	1E-12		7.14	z score increase	Affymetrix [9061022] (imputed)	N
1013	chr1	56179613	56179614	rs2671245	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p32.2	NR	rs2671245-?	NR	4E-8				Illumina [at least 7383741] (imputed)	N
1013	chr1	56223979	56223980	rs17112758	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	1p32.2	Intergenic	rs17112758-A	0.174	2E-6		1.29	[NR]	Illumina [2483385] (imputed)	N
1014	chr1	56283331	56283332	rs12411257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p32.2		rs12411257-T	0.484921	9E-10		0.013578542	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56283331	56283332	rs12411257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs12411257-C	0.523309	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
1014	chr1	56283331	56283332	rs12411257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p32.2	NR	rs12411257-C	0.517436	2E-13		0.013888	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1014	chr1	56283331	56283332	rs12411257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p32.2		rs12411257-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.492858	5E-57		0.03583988	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.492845	1E-47		0.033026677	[0.029-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.492858	9E-48		0.032581612	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.492762	1E-75		0.0412798	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.492752	9E-75		0.041039392	[0.037-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.4931	5E-24		0.03636957	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.4932	1E-22		0.03481077	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.4931	1E-31		0.04198613	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr1	56292339	56292340	rs3935996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p32.2	RP11-90C4.1	rs3935996-A	0.4931	7E-30		0.04076137	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr1	56292865	56292866	rs3934487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p32.2	RP11-90C4.1	rs3934487-T	0.5403	5E-19		0.03213126	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr1	56297903	56297904	rs190567396	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	1p32.2	NR	rs190567396-?	NR	1E-6		1.824	[0.83-2.82] unit increase	Illumina [at least 560000] (imputed)	N
1014	chr1	56359753	56359754	rs17113092	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1p32.2	NR	rs17113092-A	NR	4E-6		0.0312	[0.018-0.044] unit increase	Illumina [~ 540852]	N
1014	chr1	56359812	56359813	rs6684428	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	1p32.2	PPAP2B	rs6684428-A	0.16	5E-7	(Smoker)	1.23	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1015	chr1	56368036	56368037	rs147943615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	1p32.2	NR	rs147943615-?	NR	6E-23		0.1533	[0.12-0.18] unit increase novel	Illumina [6108953] (imputed)	N
1015	chr1	56368036	56368037	rs147943615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	1p32.2	MIR4422, PLPP3	rs147943615-?	NR	1E-27		0.2224	[0.18-0.26] unit increase novel	Illumina [6108953] (imputed)	N
1015	chr1	56443228	56443229	rs145791079	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	1p32.2	intergenic	rs145791079-C	NR	5E-7		2.21	[1.62-3.01]	Illumina [8625325] (imputed)	N
1016	chr1	56522570	56522571	rs61772132	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p32.2	NR	rs61772132-T	0.181599	1E-10		0.0548913	[0.038-0.072] unit increase	Affymetrix [17914406] (imputed)	N
1016	chr1	56526046	56526047	rs7547019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p32.2	intergenic	rs7547019-A	0.330234	2E-13		0.017230684	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56576923	56576924	rs112557609	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.2	intergenic	rs112557609-A	0.328	9E-13		0.1956	[0.14-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
1016	chr1	56576923	56576924	rs112557609	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p32.2	RP4-710M16.1, PPAP2B	rs112557609-A	0.35	7E-12		0.227	[0.17-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1016	chr1	56577345	56577346	rs72675530	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p32.2	intergenic	rs72675530-A	0.666	3E-6		0.031	[0.017-0.045] unit decrease	Affymetrix [7947838] (imputed)	N
1016	chr1	56577411	56577412	rs72675531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p32.2		rs72675531-C	NR	6E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1016	chr1	56577411	56577412	rs72675531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p32.2		rs72675531-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1016	chr1	56587538	56587539	rs12405390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p32.2		rs12405390-G	NR	4E-24		0.0145	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1016	chr1	56589349	56589350	rs6588608	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p32.2	MIR4422, PPAP2B	rs6588608-?	NR	2E-12		0.020553367	[0.015-0.026] unit increase	Illumina [27896057] (imputed)	N
1016	chr1	56604634	56604635	rs112523092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p32.2		rs112523092-T	NR	1E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1016	chr1	56605745	56605746	rs778125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p32.2	NR	rs778125-G	0.35561	8E-49		0.03429857	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56606205	56606206	rs778124	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p32.2	RP1-158P9.1	rs778124-A	0.374347	3E-8		0.047101222	[0.03-0.064] unit increase	Affymetrix [7288503] (imputed)	N
1016	chr1	56606205	56606206	rs778124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p32.2		rs778124-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1016	chr1	56612977	56612978	rs1230005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p32.2		rs1230005-A	NR	1E-17		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1016	chr1	56612977	56612978	rs1230005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p32.2	NR	rs1230005-A	0.375148	1E-10		0.012155	[0.0084-0.0159] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1016	chr1	56613051	56613052	rs4927306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p32.2		rs4927306-A	NR	9E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1016	chr1	56614830	56614831	rs1230003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs1230003-G	0.374268	1E-34		0.028403614	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56614830	56614831	rs1230003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs1230003-G	0.374391	6E-59		0.037175052	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56614830	56614831	rs1230003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs1230003-G	0.37439	1E-65		0.039271455	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56615808	56615809	rs1757915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs1757915-A	0.329397	2E-17				Affymetrix, Illumina [23467995] (imputed)	N
1016	chr1	56615808	56615809	rs1757915	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p32.2	LINC01755	rs1757915-A	0.3254	3E-14		0.0021	[0.0015-0.0027] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1016	chr1	56616711	56616712	rs12125786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p32.2		rs12125786-G	NR	2E-13		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1016	chr1	56616711	56616712	rs12125786	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.2	intergenic	rs12125786-G	0.6523	4E-10		0.229	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1016	chr1	56617910	56617911	rs12121236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs12121236-A	0.351985	2E-11		0.015537353	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56617910	56617911	rs12121236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs12121236-A	0.351987	1E-11		0.015710684	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr1	56617946	56617947	rs10449752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p32.2		rs10449752-G	NR	1E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1016	chr1	56617946	56617947	rs10449752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs10449752-G	0.3779	8E-25		0.03766105	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.405528	1E-46		0.033970896	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.4041	4E-9		0.02227206	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.404	1E-25		0.0396332	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.404	1E-28		0.0420413	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.4041	3E-10		0.02388016	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.404	4E-33		0.04523327	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.404	7E-36		0.0472075	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56624094	56624095	rs778387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p32.2	RP1-158P9.1	rs778387-G	0.4042	4E-9		0.0222433	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56629434	56629435	rs1149643	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p32.2	NR	rs1149643-A	0.3788	2E-7		0.3375	[0.21-0.46] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1017	chr1	56629434	56629435	rs1149643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p32.2		rs1149643-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1017	chr1	56632354	56632354	rs150188352	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p32.2	AC119674.1	rs150188352-CAAT	0.1935	8E-38		0.0305	[0.026-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1017	chr1	56632354	56632354	rs150188352	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p32.2	NR	rs150188352-CAAT	0.193828	1E-10		0.0542189	[0.037-0.071] unit increase	Affymetrix [17914406] (imputed)	N
1017	chr1	56636880	56636881	rs72675573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p32.2	NR	rs72675573-T	0.366495	2E-16		0.015967	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1017	chr1	56636880	56636881	rs72675573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p32.2	intergenic	rs72675573-T	0.3665	7E-10		0.02283128	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1017	chr1	56638389	56638390	rs12145670	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1p32.2	intergenic	rs12145670-T	0.6371	6E-8	(EA)	0.0019	[0.0011-0.0027] unit decrease	Affymetrix [NR] (imputed)	N
1017	chr1	56641552	56641553	rs706398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.2		rs706398-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1017	chr1	56644146	56644147	rs778416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.2	NR	rs778416-?	NR	4E-8	(male)	0.23036	[0.15-0.31] unit increase	Affymetrix [7794483] (imputed)	N
1017	chr1	56644146	56644147	rs778416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.2	NR	rs778416-?	NR	2E-7	(female)	0.14943	[0.093-0.206] unit increase	Affymetrix [7794483] (imputed)	N
1017	chr1	56644146	56644147	rs778416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p32.2	NR	rs778416-?	NR	2E-13		0.19511	[0.14-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1017	chr1	56715852	56715853	rs17457613	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p32.2	PPAP2B	rs17457613-G	0.977238	5E-9		0.0414348	[0.028-0.055] unit increase	Affymetrix [NR] (imputed)	N
1017	chr1	56715852	56715853	rs17457613	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p32.2	intergenic	rs17457613-?	NR	2E-9		0.0514	[0.037-0.066] unit decrease	Affymetrix [5701386] (imputed)	N
1017	chr1	56715907	56715908	rs2792796	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p32.2	LINC01767	rs2792796-T	0.6086	2E-15		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1017	chr1	56721533	56721534	rs1417770	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p32.2	NR	rs1417770-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
1017	chr1	56747174	56747175	rs11206773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p32.2		rs11206773-T	0.14943	3E-10		0.019518519	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr1	56759030	56759031	rs2793677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p32.2		rs2793677-A	0.268109	3E-12		0.0157105	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
1018	chr1	56762390	56762391	rs12070360	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p32.2	NR	rs12070360-C	NR	5E-6	(GEE model)	0.75133	[0.43-1.07] unit decrease	NR [NR] (imputed)	N
1018	chr1	56765410	56765411	rs17113689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p32.2		rs17113689-C	0.114193	3E-9		0.020824926	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr1	56766829	56766830	rs2793688	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p32.2	NR	rs2793688-A	0.209713	5E-10		0.0512473	[0.035-0.068] unit increase	Affymetrix [17914406] (imputed)	N
1018	chr1	56768880	56768881	rs947254	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	1p32.2		rs947254-A	0.447	5E-6		0.48	[NR] unit increase	Affymetrix [3101376] (imputed)	N
1018	chr1	56790772	56790773	rs12138574	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs12138574-?	NR	2E-8				Affymetrix [NR]	N
1018	chr1	56797980	56797981	rs11206788	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p32.2	PPAP2B	rs11206788-G	0.412835	2E-10		0.0138218	[0.0096-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
1018	chr1	56798436	56798437	rs10789019	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Body fat mass	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	1p32.2	NR	rs10789019-?		4E-8		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
1018	chr1	56850685	56850686	rs11206801	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	1p32.2	intergenic	rs11206801-A	NR	6E-8	(Controls)			Illumina [498205]	N
1018	chr1	56876225	56876225	rs574597038	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	1p32.2	LINC01755, LINC01767	rs574597038-?	NR	3E-6		0.166598	[0.097-0.237] unit increase	Illumina [19707525] (imputed)	N
1018	chr1	56877508	56877509	rs11206803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.2		rs11206803-T	NR	3E-8		0.0697	[0.045-0.094] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1018	chr1	56877508	56877509	rs11206803	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	1p32.2	NR	rs11206803-G		7E-6				Illumina [458865]	N
1018	chr1	56884177	56884178	rs2184103	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	1p32.2	LINC01767, PLPP3	rs2184103-?	NR	2E-10		0.0627473	[0.043-0.082] unit increase	Illumina [19707525] (imputed)	N
1019	chr1	56900269	56900270	rs875153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p32.2	NR	rs875153-T	0.475912	3E-9		0.013566564	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56905523	56905524	rs1999537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p32.2	intergenic	rs1999537-A	0.8977	8E-16		0.04783717	[0.036-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56905523	56905524	rs1999537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p32.2	intergenic	rs1999537-A	0.8977	3E-16		0.04854075	[0.037-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56905523	56905524	rs1999537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p32.2	intergenic	rs1999537-A	0.8977	3E-13		0.04361486	[0.032-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56905523	56905524	rs1999537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p32.2	intergenic	rs1999537-A	0.8976	4E-22		0.05705475	[0.045-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p32.2		rs7537229-A	NR	4E-20		0.0353	[0.028-0.043] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	1p32.2		rs7537229-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1p32.2		rs7537229-G	0.104	5E-18				Affymetrix [10369434] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p32.2	NR	rs7537229-A	0.895952	2E-13		0.026662001	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p32.2		rs7537229-A	0.895944	1E-34		0.044582162	[0.037-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p32.2		rs7537229-A	0.895959	3E-30		0.04140958	[0.034-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p32.2		rs7537229-A	0.895938	2E-35		0.044988383	[0.038-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs7537229-A	0.914613	1E-18				Affymetrix, Illumina [24649327] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p32.2	NR	rs7537229-A	0.896318	2E-19		0.027415	[0.021-0.033] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs7537229-A	0.907878	2E-41				Affymetrix, Illumina [23114412] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p32.2	NR	rs7537229-A	0.896103	4E-41		0.042337	[0.036-0.049] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p32.2		rs7537229-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p32.2	intergenic	rs7537229-A	0.8958	6E-16		0.04751224	[0.036-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p32.2	intergenic	rs7537229-A	0.8958	3E-24		0.05930679	[0.048-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p32.2	intergenic	rs7537229-A	0.8958	6E-14		0.04385197	[0.032-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56906273	56906274	rs7537229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p32.2	intergenic	rs7537229-A	0.8958	1E-15		0.04689552	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56907562	56907563	rs5011302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p32.2		rs5011302-C	NR	4E-21		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1019	chr1	56907562	56907563	rs5011302	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p32.2		rs5011302-T	0.456	2E-16				Affymetrix [10369434] (imputed)	N
1019	chr1	56907562	56907563	rs5011302	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p32.2		rs5011302-T	0.456	7E-10				Affymetrix [10369434] (imputed)	N
1019	chr1	56907562	56907563	rs5011302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p32.2		rs5011302-C	0.543655	1E-19		0.020162355	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56907562	56907563	rs5011302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p32.2		rs5011302-C	0.543684	8E-10		0.014652886	[0.01-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56907719	56907720	rs4319365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p32.2		rs4319365-A	0.543669	7E-11		0.015638173	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56907719	56907720	rs4319365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p32.2		rs4319365-A	0.543679	1E-10		0.015504748	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56907719	56907720	rs4319365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs4319365-A	0.536236	1E-22				Affymetrix, Illumina [23472807] (imputed)	N
1019	chr1	56907719	56907720	rs4319365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p32.2	NR	rs4319365-A	0.544871	3E-24		0.01934	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1019	chr1	56907719	56907720	rs4319365	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p32.2	intergenic	rs4319365-A	0.5434	2E-9		0.02171254	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56912953	56912954	rs56271243	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC119674.1	rs56271243-?	NR	3E-9	(male)	2.50091	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr1	56912953	56912954	rs56271243	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC119674.1	rs56271243-?	NR	2E-9		2.69472	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr1	56924474	56924475	rs77770952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p32.2	NR	rs77770952-C	0.039213	2E-10		0.030002	[0.021-0.039] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1019	chr1	56924474	56924475	rs77770952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p32.2	NR	rs77770952-C	0.039251	3E-11		0.031593	[0.022-0.041] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1019	chr1	56924733	56924734	rs4912285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p32.2		rs4912285-T	NR	3E-8		0.0258	[0.017-0.035] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1019	chr1	56932260	56932261	rs10888971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.2	NR	rs10888971-C	0.904414	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1019	chr1	56932963	56932964	rs10710459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p32.2	intergenic	rs10710459-C	0.9279	3E-9		0.04502915	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56934119	56934121	rs372085772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p32.2	NR	rs372085772-I	0.891437	2E-11		0.021867	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1019	chr1	56934121	56934121	rs111253602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p32.2		rs111253602-AAG	0.891463	7E-12		0.024809258	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56934121	56934121	rs111253602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p32.2		rs111253602-AAG	0.891462	1E-11		0.024603358	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56938217	56938218	rs6588634	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p32.2	RP4-710M16.1, PPAP2B	rs6588634-T	0.89	1E-10		0.326	[0.23-0.42] unit increase	Affymetrix [~ 9800000] (imputed)	N
1019	chr1	56939234	56939235	rs61772578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p32.2		rs61772578-G	NR	9E-12		0.0645	[0.046-0.083] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1019	chr1	56939234	56939235	rs61772578	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p32.2	PPAP2B	rs61772578-G	0.110553	3E-12		0.06721092	[0.048-0.086] unit increase	Affymetrix [7288503] (imputed)	N
1019	chr1	56945665	56945666	rs72664303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p32.2	NR	rs72664303-C	0.102753	5E-34		0.044660546	[0.037-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56945665	56945666	rs72664303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p32.2	NR	rs72664303-C	0.102759	2E-25		0.039248105	[0.032-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56945665	56945666	rs72664303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p32.2		rs72664303-C	0.102726	2E-23		0.03916262	[0.031-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56945665	56945666	rs72664303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p32.2		rs72664303-C	0.102727	2E-23		0.039230537	[0.032-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56960122	56960123	rs11206830	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	1p32.2	NR	rs11206830-?	0.02	8E-8		2.162	[NR]	Illumina [1468075]	N
1019	chr1	56962820	56962821	rs17114036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p32.2		rs17114036-G	NR	6E-14		0.1341	[0.099-0.169] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1019	chr1	56962820	56962821	rs17114036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p32.2		rs17114036-G	NR	6E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1019	chr1	56962820	56962821	rs17114036	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	1p32.2	PPAP2B	rs17114036-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1019	chr1	56962820	56962821	rs17114036	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	1p32.2	PPAP2B	rs17114036-?		3E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1019	chr1	56962820	56962821	rs17114036	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	1p32.2	PPAP2B	rs17114036-?	NR	1E-8		1.1494	[1.1-1.22]	Illumina [575000] (imputed)	N
1019	chr1	56962820	56962821	rs17114036	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p32.2	PPAP2B	rs17114036-A	0.91	4E-19		1.17	[1.13-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1019	chr1	56963626	56963627	rs72664318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1p32.2		rs72664318-G	NR	1E-17		0.1312	[0.1-0.16] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1019	chr1	56965663	56965664	rs9970807	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p32.2	PPAP2B	rs9970807-C	0.92	2E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [8600000] (imputed)	N
1019	chr1	56965663	56965664	rs9970807	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p32.2	PPAP2B	rs9970807-C	0.915097	5E-14		1.13	[1.10- 1.17]	Affymetrix, Illumina [8600000] (imputed)	N
1019	chr1	56966349	56966350	rs17114046	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p32.2	PLPP3	rs17114046-A	0.91049	3E-15		1.11	[1.08-1.14]	NR [8126035] (imputed)	N
1019	chr1	56966349	56966350	rs17114046	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	1p32.2	PLPP3	rs17114046-G	0.092	1E-11				Affymetrix [28000000] (imputed)	N
1019	chr1	56966349	56966350	rs17114046	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p32.2	PPAP2B	rs17114046-A	0.9062	8E-28		0.096	[0.079-0.113] unit increase	Affymetrix [at least 7947838] (imputed)	N
1019	chr1	56966349	56966350	rs17114046	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p32.2	PPAP2B	rs17114046-A	0.907	1E-27		0.107	[0.087-0.127] unit increase	Affymetrix [7947838] (imputed)	N
1019	chr1	56966349	56966350	rs17114046	21846871	Mehta NN	2011-08-01	Circ Cardiovasc Genet	A genome-wide association study in europeans and South asians identifies 5 new Loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 6,996 South Asian ancestry cases, 15,062 controls	21,408 cases, 19,185 controls	1p32.2	PPAP2B	rs17114046-?	NR	3E-7				Illumina [~ 57500]	N
1019	chr1	56966349	56966350	rs17114046	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	1p32.2	PPAP2B	rs17114046-?	NR	2E-7				Illumina [574919]	N
1019	chr1	56968476	56968477	rs4912314	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	1p32.2	PPAP2B	rs4912314-C	0.8	3E-7	(East Asian)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1019	chr1	56972352	56972353	rs72664324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p32.2	PPAP2B	rs72664324-A	0.093627	3E-13		0.029741023	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56972352	56972353	rs72664324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p32.2	PPAP2B	rs72664324-A	0.0934	1E-13		0.04587679	[0.034-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56972352	56972353	rs72664324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p32.2	PPAP2B	rs72664324-A	0.0934	8E-14		0.04609692	[0.034-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56972352	56972353	rs72664324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p32.2	PPAP2B	rs72664324-A	0.0935	2E-15		0.04893718	[0.037-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56972352	56972353	rs72664324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p32.2	PPAP2B	rs72664324-A	0.0934	5E-16		0.04995505	[0.038-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr1	56974277	56974278	rs12406517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p32.2	PPAP2B	rs12406517-G	0.352226	2E-9		0.013964996	[0.0094-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr1	56974277	56974278	rs12406517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p32.2	PPAP2B	rs12406517-G	0.35224	1E-11		0.01574406	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr1	56986302	56986303	rs147055617	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p32.2	PPAP2B	rs147055617-A	0.918	8E-14		0.088	[0.064-0.112] unit decrease	Affymetrix [7947838] (imputed)	N
1019	chr1	56986632	56986633	rs55869368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p32.2		rs55869368-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1019	chr1	56986977	56986978	rs72664335	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p32.2	PLPP3	rs72664335-?	NR	3E-30		0.109635	[0.091-0.128] unit decrease	Illumina [4804024] (imputed)	N
1019	chr1	56988550	56988551	rs56348932	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1p32.2	PPAP2B	rs56348932-A	0.92	2E-12		1.11	[1.08-1.13]	Illumina [5167567] (imputed)	N
1019	chr1	56992873	56992874	rs1777277	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p32.2	PLPP3	rs1777277-C	0.545014	5E-9		0.0107656	[0.0071-0.0144] unit increase	NR [13737936] (imputed)	N
1019	chr1	56992873	56992874	rs1777277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p32.2		rs1777277-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1019	chr1	56992873	56992874	rs1777277	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p32.2		rs1777277-?	NR	1E-10		0.0121385	[0.0081-0.0162] unit increase	Affymetrix [20259828] (imputed)	N
1019	chr1	56996190	56996191	rs4634932	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p32.2	PPAP2B	rs4634932-T	0.9213	1E-25		0.1286	[0.1-0.15] unit increase	NR [8041861] (imputed)	N
1019	chr1	57008777	57008778	rs2404715	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p32.2	PPAP2B	rs2404715-C		2E-9		0.4	unit increase	Affymetrix [at least 2696785] (imputed)	N
1019	chr1	57008777	57008778	rs2404715	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.2	PPAP2B	rs2404715-C		3E-6	(EA)	0.324	unit increase	Affymetrix [at least 2696785] (imputed)	N
1019	chr1	57008777	57008778	rs2404715	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.2	PPAP2B	rs2404715-C		1E-7		0.337	unit increase	Affymetrix [at least 2696785] (imputed)	N
1019	chr1	57008777	57008778	rs2404715	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p32.2	PPAP2B	rs2404715-C		3E-14		0.338	unit increase	Affymetrix [at least 2696785] (imputed)	N
1019	chr1	57015120	57015121	rs4912377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p32.2	NR	rs4912377-C	0.486788	1E-9		0.00763583	[0.0051-0.0102] unit increase	Affymetrix [16578495] (imputed)	N
1019	chr1	57015667	57015668	rs61772626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p32.2		rs61772626-G	NR	7E-9		0.0705	[0.047-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1019	chr1	57015667	57015668	rs61772626	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p32.2	PPAP2B	rs61772626-G	0.123313	6E-9		0.07088173	[0.047-0.095] unit increase	Affymetrix [7288503] (imputed)	N
1019	chr1	57015667	57015668	rs61772626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p32.2		rs61772626-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1019	chr1	57016130	57016131	rs56170783	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1p32.2	PPAP2B	rs56170783-A	0.915	2E-12		1.11	[1.08-1.14]	Affymetrix [9149595] (imputed)	N
1020	chr1	57016476	57016477	rs7529520	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p32.2	NR	rs7529520-C	0.485959	6E-12		0.0183162	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1020	chr1	57018984	57018985	rs75264190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p32.2		rs75264190-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1020	chr1	57020649	57020650	rs17416285	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p32.2	PPAP2B	rs17416285-C	0.8894	4E-13		0.0669	[0.049-0.085] unit decrease	NR [8041861] (imputed)	N
1020	chr1	57070013	57070014	rs141589375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.2	NR	rs141589375-T	0.01568	6E-9	(LDHB)	0.1347	NR unit increase	Illumina [1671387] (imputed)	N
1020	chr1	57118761	57118761	rs201001750	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.2	NR	rs201001750-AT	0.01568	6E-9	(LDHB)	0.1347	NR unit increase	Illumina [1671387] (imputed)	N
1020	chr1	57126918	57126919	rs2746347	22286170	Cusanovich DA	2012-01-27	Hum Mol Genet	The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.	Lymphocyte counts	462 Hutterite individuals	NA	1p32.2	PRKAA2	rs2746347-?	NR	4E-7				Affymetrix [279749]	N
1021	chr1	57209022	57209023	rs11206911	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p32.2	Intergenic	rs11206911-?		5E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
1021	chr1	57211203	57211204	rs11206912	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p32.2	Intergenic	rs11206912-?		9E-6		1.25	[1.13-1.38]	Illumina [7645193] (imputed)	N
1021	chr1	57224163	57224164	rs116710617	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p32.2	C1orf168	rs116710617-C	0.0176793426103647	3E-6	(G_unclassified_F_Porphyromonadaceae_RNT)	0.542584	[0.31-0.77] unit increase	Illumina [7711310] (imputed)	N
1021	chr1	57231990	57231991	rs12410615	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	1p32.2	NR	rs12410615-?	NR	2E-6		4.505	[2.73-6.28] unit decrease	Illumina [498648]	N
1021	chr1	57241866	57241867	rs857160	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	1p32.2	C1orf168	rs857160-T		4E-6		100.41	[57.58-143.24] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
1021	chr1	57243453	57243454	rs17372114	22843503	Qi Q	2012-07-26	Hum Mol Genet	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels	3,248 European ancestry individuals	659 European ancestry individuals	1p32.2	C1orf168	rs17372114-T	0.59	5E-7		0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
1021	chr1	57260358	57260359	rs74073568	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	1p32.2	C1orf168	rs74073568-G	0.883	5E-6		1.29	[1.15-1.45]	Affymetrix, Illumina [12148595] (imputed)	N
1021	chr1	57266879	57266880	rs1361728	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs1361728-?	NR	9E-16				Affymetrix [NR]	N
1021	chr1	57269520	57269521	rs6662617	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.2	C1orf168	rs6662617-G	0.271	9E-6	(Diet protein )	0.02	[NR] %energy increase	Illumina [899892]	N
1021	chr1	57275699	57275700	rs12139639	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p32.2	NR	rs12139639-?	NR	1E-5		2.51	[2.15-2.94]	Illumina [539000] (imputed)	N
1022	chr1	57375717	57375718	rs682479	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	1p32.2		rs682479-A	0.2961	4E-101		0.409304	[0.37-0.45] unit increase	Illumina [7506463] (imputed)	N
1022	chr1	57386274	57386275	rs713452	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8G	5,344 Icelandic ancestry individuals	NA	1p32.2		rs713452-C	0.2969	2E-34		0.235057	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1022	chr1	57390428	57390429	rs587255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUMF1	5,364 Icelandic ancestry individuals	NA	1p32.2		rs587255-G	0.3077	1E-32		0.242643	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1022	chr1	57390428	57390429	rs587255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	1p32.2		rs587255-G	0.3077	3E-251		0.628445	[0.59-0.66] unit increase	Illumina [7506463] (imputed)	N
1022	chr1	57390428	57390429	rs587255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLGN	5,360 Icelandic ancestry individuals	NA	1p32.2		rs587255-G	0.3077	3E-48		0.292839	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
1022	chr1	57394177	57394178	rs620891	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1p32.2	NR	rs620891-?		3E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1022	chr1	57394730	57394731	rs618184	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs618184-G	0.322	2E-90	(Semenogelin-1, SEMG1.7115.5.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1022	chr1	57397081	57397082	rs684782	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs684782-T	0.324	4E-46	(Septin-10, SEPT10.12690.33.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1022	chr1	57397737	57397738	rs612563	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs612563-C	0.324	6E-14	(AP-4 complex subunit mu-1, AP4M1.10076.1.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1022	chr1	57404564	57404564	rs3216676	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs3216676-GA	0.323	6E-81	(Neurexophilin-1, NXPH1.4562.1.2)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
1022	chr1	57407483	57407484	rs626457	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p32.2	C8A, C8B	rs626457-T	0.3219316	3E-9	(EA, C-C motif chemokine 1)	0.2778	[0.19-0.37] unit increase	Affymetrix [509946]	N
1022	chr1	57407483	57407484	rs626457	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p32.2	C8A, C8B	rs626457-T	0.3219316	3E-19	(Neurexophilin-1)	0.414	[0.33-0.5] unit increase	Affymetrix [509946]	N
1022	chr1	57409363	57409364	rs202043901	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	1p32.2		rs202043901-?	NR	3E-8		0.422771	[0.27-0.58] unit decrease	NR [9800000] (imputed)	N
1023	chr1	57415199	57415200	rs706481	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	1p32.2	NR	rs706481-?	NR	2E-8	(Paenibacillus)	0.476779	[0.31-0.64] unit increase	Illumina [5293637] (imputed)	N
1023	chr1	57415199	57415200	rs706481	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	1p32.2	NR	rs706481-?	NR	2E-8	(Paenibacillaceae_1)	0.476779	[0.31-0.64] unit increase	Illumina [5293637] (imputed)	N
1023	chr1	57415309	57415310	rs12085435	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	1p32.2		rs12085435-A	0.04438	5E-56		0.710483	[0.62-0.8] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57415309	57415310	rs12085435	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPYSL2	5,367 Icelandic ancestry individuals	NA	1p32.2		rs12085435-A	0.04438	1E-35		0.579655	[0.49-0.67] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57415309	57415310	rs12085435	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLGN	5,360 Icelandic ancestry individuals	NA	1p32.2		rs12085435-A	0.04438	5E-35		0.562077	[0.47-0.65] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57415309	57415310	rs12085435	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs12085435-A	0.052	1E-34	(Septin-10, SEPT10.12690.33.3)	0.67	[0.57-0.77] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57415309	57415310	rs12085435	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs12085435-A	0.052	1E-30	(NKG2-E type II integral membrane protein, KLRC3.11571.75.3)	0.63	[0.53-0.73] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57420626	57420627	rs41452950	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	NR	rs41452950-G	0.052	1E-70	(Semenogelin-1, SEMG1.7115.5.3)	0.95	[0.85-1.05] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	1p32.2		rs1013579-C	0.01706	5E-36		0.880787	[0.74-1.02] unit decrease	Illumina [7506463] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	1p32.2		rs1013579-C	0.01706	5E-46		1.03283	[0.89-1.17] unit decrease	Illumina [7506463] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	NR	rs1013579-T	0.974	9E-24	(Neurexophilin-1, NXPH1.4562.1.2)	0.78	[0.62-0.94] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	NR	rs1013579-T	0.974	3E-29	(Semenogelin-1, SEMG1.7115.5.3)	0.87	[0.71-1.03] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	NR	rs1013579-T	0.974	1E-22	(Septin-10, SEPT10.12690.33.3)	0.76	[0.6-0.92] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57422483	57422484	rs1013579	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p32.2	C8B	rs1013579-C	0.04162487	9E-13	(EA, Complement component C8)	0.7941	[0.58-1.01] unit decrease	Affymetrix [509946]	N
1023	chr1	57422483	57422484	rs1013579	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p32.2	C8B	rs1013579-C	0.04162487	1E-10	(EA, Neurexophilin-1)	0.7208	[0.5-0.94] unit decrease	Affymetrix [509946]	N
1023	chr1	57422510	57422511	rs12067507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VTN	5,351 Icelandic ancestry individuals	NA	1p32.2		rs12067507-T	0.04394	3E-21		0.412477	[0.33-0.5] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57422510	57422511	rs12067507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	1p32.2		rs12067507-T	0.04394	2E-40		0.586448	[0.5-0.67] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57422510	57422511	rs12067507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOLH1	5,337 Icelandic ancestry individuals	NA	1p32.2		rs12067507-T	0.04394	8E-12		0.283472	[0.2-0.36] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57422510	57422511	rs12067507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8A;C8B;C8G	5,343 Icelandic ancestry individuals	NA	1p32.2		rs12067507-T	0.04394	3E-14		0.305522	[0.23-0.38] unit increase	Illumina [7506463] (imputed)	N
1023	chr1	57426453	57426454	rs668555	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p32.2	C8B, RP5-1103B4.3, AL161740.1	rs668555-C	0.2942656	2E-11	(EA, Neurexophilin-1)	0.3227	[0.23-0.42] unit increase	Affymetrix [509946]	N
1023	chr1	57426949	57426950	rs12092641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs12092641-C	0.052	7E-17	(Vitronectin, VTN.8280.238.3)	0.46	[0.34-0.58] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57426949	57426950	rs12092641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs12092641-C	0.052	3E-18	(Neurexophilin-1, NXPH1.4562.1.2)	0.48	[0.36-0.6] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr1	57431250	57431251	rs78501968	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p32.2	C8B	rs78501968-A	0.059	1E-15	(Testis-expressed sequence 29 protein, TEX29.10557.6.3)	0.42	[0.32-0.52] unit increase	Affymetrix [10572788] (imputed)	N
1024	chr1	57552238	57552239	rs3754260	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs3754260-?	NR	9E-42				Affymetrix [NR]	N
1024	chr1	57570760	57570761	rs536250	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs536250-?	NR	4E-6				Affymetrix [NR]	N
1024	chr1	57600214	57600215	rs12133084	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG1	5,362 Icelandic ancestry individuals	NA	1p32.2		rs12133084-C	0.01344	2E-11		0.542193	[0.38-0.7] unit increase	Illumina [7506463] (imputed)	N
1024	chr1	57625931	57625932	rs17541203	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1p32.2	DAB1	rs17541203-C	0.082	2E-6	(Single Height-female)	0.13	[0.073-0.187] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1024	chr1	57648855	57648856	rs17115257	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	1p32.2		rs17115257-?	NR	2E-8		0.8029	[0.52-1.08] unit increase	Affymetrix [NR] (imputed)	N
1024	chr1	57650409	57650410	rs58359668	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	1p32.2		rs58359668-?	NR	2E-8		0.8037	[0.52-1.08] unit increase	Affymetrix [NR] (imputed)	N
1024	chr1	57656610	57656611	rs1394397	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p32.2	NR	rs1394397-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1024	chr1	57669813	57669814	rs264038	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p32.2	DAB1	rs264038-C	0.4696	3E-9		0.0119759	[0.008-0.0159] unit increase	Affymetrix [up to 18485882] (imputed)	N
1025	chr1	57692899	57692900	rs197624	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	1p32.2	DAB1	rs197624-?		8E-7	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit increase	Illumina [5137218] (imputed)	N
1025	chr1	57697601	57697602	rs184243701	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	1p32.2	NR	rs184243701-C		1E-6		0.6651	[0.39-0.94] SD units decrease	NR [10700000] (imputed)	N
1025	chr1	57708087	57708088	rs6587766	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p32.2	NR	rs6587766-T	0.0402	1E-6		0.0463	[0.027-0.065] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1025	chr1	57718029	57718030	rs548897	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.2		rs548897-A	0.45	1E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1025	chr1	57735594	57735595	rs663234	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.2	Intergenic	rs663234-C	0.3982	2E-9	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1025	chr1	57739163	57739164	rs74834332	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	1p32.2	DAB1, C8B, RPS20P5	rs74834332-A	0.02	4E-8		0.79	[0.52-1.06] unit increase	Illumina [7797256] (imputed)	N
1025	chr1	57802635	57802636	rs55863020	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.2		rs55863020-C	0.33	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
1025	chr1	57802635	57802636	rs55863020	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p32.2	NR	rs55863020-C	0.3505	7E-10				NR [9056863] (imputed)	N
1026	chr1	57805549	57805550	rs10159302	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1p32.2	NR	rs10159302-?	NR	9E-6	(progression)			Illumina [NR]	N
1026	chr1	57819203	57819204	rs11588755	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p32.2	NR	rs11588755-G	0.478	5E-9		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1026	chr1	57829433	57829434	rs76484449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p32.2	NR	rs76484449-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1026	chr1	57829433	57829434	rs76484449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p32.2		rs76484449-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1026	chr1	57831247	57831248	rs6669975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.2	Intergenic	rs6669975-T	0.5583	3E-11	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1026	chr1	57831247	57831248	rs6669975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p32.2	Intergenic	rs6669975-T	0.5583	1E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1026	chr1	57833688	57833689	rs2113453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.2	Intergenic	rs2113453-T	0.4465	4E-13	(MTAG)	0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1026	chr1	57850913	57850914	rs12405761	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p32.2	DAB1	rs12405761-A	0.570608	1E-11		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1026	chr1	57850913	57850914	rs12405761	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p32.2	DAB1	rs12405761-A	0.570608	2E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1026	chr1	57859520	57859521	rs540431	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	1p32.2		rs540431-G	0.4502	5E-9		0.01442	[0.0096-0.0193] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1026	chr1	57862948	57862949	rs17425189	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1p32.2	DAB1	rs17425189-T	0.825	3E-9		0.020187248	[0.014-0.027] unit increase	Affymetrix [~ 11515000] (imputed)	N
1026	chr1	57864303	57864304	rs269054	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	1p32.2	NR	rs269054-A	NR	2E-7		0.666	unit increase	Affymetrix [14661600] (imputed)	N
1026	chr1	57866683	57866684	rs269051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p32.2	Intergenic	rs269051-C	0.4522	2E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1026	chr1	57874878	57874879	rs17425707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p32.2	NA	rs17425707-T	0.9	6E-10		0.0173	[0.012-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1026	chr1	57894572	57894573	rs55930348	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p32.2		rs55930348-G	0.772	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1026	chr1	57903915	57903916	rs80291200	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	1p32.2	NR	rs80291200-G	0.2025	5E-6		1.254	NR	Affymetrix [265112]	N
1027	chr1	57961945	57961946	rs4620568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.2	Intergenic	rs4620568-C	0.6794	2E-8	(MTAG)	0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1027	chr1	57966527	57966528	rs1341320	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	1p32.2	DAB1	rs1341320-G	0.064	5E-6		0.18	[0.1-0.26] unit decrease	Illumina [2316178] (imputed)	N
1027	chr1	57986837	57986838	rs12135705	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p32.2	LOC644928	rs12135705-?	NR	3E-6	(TAG 54:5)	0.17531723	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1027	chr1	58053153	58053154	rs2185602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.2	Intergenic	rs2185602-A	0.2716	3E-8	(MTAG)	0.0103	[0.0066-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr1	58086956	58086956	rs57872771	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	1p32.2		rs57872771-T	NR	9E-6		1.21	[1.11-1.31]	Illumina [7105229] (imputed)	N
1028	chr1	58087309	58087310	rs78469449	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	1p32.2	NR	rs78469449-G		6E-6		0.3661	[0.21-0.52] SD units increase	NR [10700000] (imputed)	N
1028	chr1	58099706	58099707	rs1539053	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p32.2	NR	rs1539053-G	0.6628	7E-6		0.043	[0.024-0.062] unit decrease	Illumina [up to 1980188] (imputed)	N
1028	chr1	58100629	58100630	rs147333636	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	1p32.2	NR	rs147333636-?		8E-6		46.9233	[26.52-67.33] unit increase	NR [NR] (imputed)	N
1028	chr1	58109828	58109829	rs1404384	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p32.2	NR	rs1404384-T	0.657	5E-6		0.0443	[0.025-0.063] unit decrease	Illumina [up to 1980188] (imputed)	N
1028	chr1	58174663	58174664	rs542241509	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	1p32.2	DAB1	rs542241509-G		1E-7		0.756	[NR] unit increase	Illumina [24111857] (imputed)	N
1028	chr1	58191800	58191801	rs985783	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.2	DAB1	rs985783-G	0.779229	5E-8	(132 ms)	0.0375396	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1029	chr1	58210168	58210169	rs116161367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Intracerebral hemorrhage	1,935 European ancestry cases, 471,578 European ancestry controls, 1,456 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	1p32.2		rs116161367-A	NR	2E-8		0.4516	[0.29-0.61] unit increase	Affymetrix, Illumina [25841532] (imputed)	N
1029	chr1	58210168	58210169	rs116161367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Intracerebral hemorrhage	1,456 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	1p32.2		rs116161367-A	0.03936324	3E-8		0.6027577	[0.39-0.82] unit increase	Illumina [13425819] (imputed)	N
1029	chr1	58249657	58249658	rs3131749	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.2		rs3131749-A	0.5829	8E-11	(conditional-joint)	0.0093	[0.0066-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr1	58255001	58255002	rs7533341	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p32.2	DAB1	rs7533341-G	0.387809	1E-8		0.0118934	[0.0077-0.016] unit decrease	NR [16516521] (imputed)	N
1029	chr1	58256543	58256544	rs35738462	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	1p32.2	NR	rs35738462-T	0.57	2E-6		1.32	[1.20-1.44]	Illumina [4058415] (imputed)	N
1029	chr1	58288316	58288317	rs852771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.2		rs852771-T	0.6963	2E-9		0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr1	58288316	58288317	rs852771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.2	Intergenic	rs852771-T	0.6963	5E-10	(MTAG)	0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr1	58302101	58302102	rs852787	29472232	Li Y	2018-02-22	Arterioscler Thromb Vasc Biol	Genome-Wide Association and Functional Studies Identify SCML4 and THSD7A as Novel Susceptibility Genes for Coronary Artery Disease.	Coronary artery disease	280 Han Chinese ancestry cases, 350 Han Chinese ancestry controls	9,764 Han Chinese ancestry cases, 11,434 Han Chinese ancestry controls	1p32.2	DAB1	rs852787-T	0.073	2E-14		1.29	[1.21-1.38]	Affymetrix [314806] (imputed)	N
1029	chr1	58314186	58314187	rs723714	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p32.2	NR	rs723714-?	NR	1E-9		1607.0258	NR unit decrease	Illumina [2379855]	N
1029	chr1	58319827	58319828	rs985795	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	1p32.2	DAB1	rs985795-T	0.946	2E-6		0.094	[0.055-0.133] unit decrease	Illumina [6150213] (imputed)	N
1030	chr1	58330800	58330801	rs1884486	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p32.2	DAB1-AS1, DAB1	rs1884486-C	0.6906	3E-6		0.0336	[0.019-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1030	chr1	58330800	58330801	rs1884486	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p32.2	DAB1-AS1, DAB1	rs1884486-C	0.6906	3E-6		0.0336	[0.019-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1030	chr1	58350804	58350805	rs17579352	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	1p32.2	DAB1	rs17579352-C	0.95	2E-7		1.4	[1.23-1.59]	Affymetrix, Illumina [7567914] (imputed)	N
1030	chr1	58362122	58362123	rs1202835	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p32.2	DAB1	rs1202835-?		5E-6				Illumina [4322238] (imputed)	N
1030	chr1	58367235	58367236	rs6679454	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	1p32.2	DAB1	rs6679454-G		3E-7	(AA)			Illumina [NR]	N
1030	chr1	58437665	58437666	rs12037261	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs12037261-?	NR	7E-16				Affymetrix [NR]	N
1031	chr1	58526757	58526758	rs11207162	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	1p32.2	DAB1	rs11207162-T	0.124	3E-10		1.052	[0.73-1.37] unit increase	Illumina [621723]	N
1031	chr1	58537918	58537919	rs2764684	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p32.2		rs2764684-C	0.16	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1031	chr1	58537918	58537919	rs2764684	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p32.2	NR	rs2764684-C	0.1758	6E-10				NR [9056863] (imputed)	N
1031	chr1	58537918	58537919	rs2764684	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.2		rs2764684-T	0.8266	1E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1031	chr1	58537918	58537919	rs2764684	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.2	Intergenic	rs2764684-T	0.8266	7E-17	(MTAG)	0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr1	58539349	58539350	rs66864104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p32.2		rs66864104-G	0.16	3E-24		10.15	z score increase	Affymetrix [9061022] (imputed)	N
1031	chr1	58539349	58539350	rs66864104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p32.2		rs66864104-G	0.16	1E-39		13.17	z score increase	Affymetrix [9061022] (imputed)	N
1031	chr1	58539349	58539350	rs66864104	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p32.2	NR	rs66864104-G	0.1757	1E-17				NR [9056863] (imputed)	N
1031	chr1	58539349	58539350	rs66864104	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	1p32.2	NR	rs66864104-?		2E-11				NR [7428630] (imputed)	N
1031	chr1	58539349	58539350	rs66864104	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p32.2	DAB1	rs66864104-?		6E-9				NR [7428630] (imputed)	N
1031	chr1	58571972	58571973	rs1213769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.2	Intergenic	rs1213769-T	0.7192	7E-11	(MTAG)	0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr1	58584485	58584486	rs4912182	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p32.2	NR	rs4912182-?	NR	8E-17				Affymetrix [NR]	N
1032	chr1	58682810	58682811	rs11207177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.2	Intergenic	rs11207177-T	0.3336	2E-12	(MTAG)	0.0133	[0.0096-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr1	58682810	58682811	rs11207177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p32.2	Intergenic	rs11207177-T	0.3336	2E-13		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1032	chr1	58697656	58697657	rs72910442	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	1p32.2	NR	rs72910442-C		6E-6		0.282	[0.16-0.4] SD units decrease	NR [10700000] (imputed)	N
1032	chr1	58717409	58717410	rs7537039	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.2	Intergenic	rs7537039-A	0.5688	3E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr1	58757914	58757915	rs527409	21221998	Kim JJ	2011-01-09	Hum Genet	A genome-wide association analysis reveals 1p31 and 2p13.3 as susceptibility loci for Kawasaki disease.	Kawasaki disease	186 Korean ancestry child cases, 600 Korean ancestry controls	514 East Asian ancestry child cases, 1,042 East Asian ancestry controls	1p32.2	DAB1	rs527409-T	0.02	1E-6	(KD)	2.9	[1.85-4.54]	Affymetrix [641760]	N
1033	chr1	58762461	58762462	rs61781882	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.2	NR	rs61781882-T	0.01045	6E-10	(ACAA1)	1.529	NR unit increase	Illumina [1671387] (imputed)	N
1033	chr1	58784352	58784353	rs12750369	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	1p32.2	DAB1	rs12750369-A	0.67	2E-6		1.1904762	[1.12-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1033	chr1	58789401	58789402	rs148621091	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	1p32.2		rs148621091-?	NR	5E-6		0.6587074	[0.38-0.94] unit increase	Illumina [9901720] (imputed)	N
1033	chr1	58808077	58808078	rs145771899	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	1p32.2	NR	rs145771899-G		8E-6		0.3379	[0.19-0.49] SD units decrease	NR [10700000] (imputed)	N
1033	chr1	58815242	58815243	rs4912332	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p32.2		rs4912332-C	0.514	2E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1033	chr1	58815242	58815243	rs4912332	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p32.2	NR	rs4912332-T	0.491	3E-8		0.014120925	[0.0091-0.0191] unit increase	NR [~ 10000000] (imputed)	N
1033	chr1	58826546	58826547	rs11580730	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1p32.2	NA	rs11580730-T		3E-8		0.0109444	[0.0071-0.0148] unit increase	Illumina [13288253] (imputed)	N
1034	chr1	58898581	58898582	rs187680077	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	1p32.2	NR	rs187680077-?	NR	4E-6		1.6493	[0.78-2.52] unit decrease	Illumina [at least 560000] (imputed)	N
1034	chr1	58934154	58934155	rs338241	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	1p32.2	Intergenic	rs338241-?		6E-6		1.813	[NR]	Affymetrix [492217] (imputed)	N
1034	chr1	58939069	58939070	rs180765966	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	1p32.2	NR	rs180765966-?	NR	7E-6		0.1466	[0.083-0.21] unit decrease	Illumina [at least 560000] (imputed)	N
1035	chr1	59025936	59025937	rs114228595	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	1p32.1		rs114228595-?	NR	7E-7		1.6414		NR [NR] (imputed)	N
1035	chr1	59036624	59036625	rs638065	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1p32.1	intergenic	rs638065-?	NR	8E-6				Illumina [~ 2400000] (imputed)	N
1035	chr1	59101133	59101134	rs170828	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	1p32.1	TACSTD2-MYSM1	rs170828-G	0.118	7E-6		1.19	[1.12-1.26]	Affymetrix, Illumina [8000000] (imputed)	N
1036	chr1	59119119	59119120	rs232870	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Iron levels	587 Han Chinese ancestry individuals	NA	1p32.1		rs232870-?	NR	2E-6		0.128	[0.026-0.23] unit increase	Affymetrix [6423076] (imputed)	N
1036	chr1	59162147	59162148	rs2811893	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	1p32.1	MYSM1	rs2811893-T	NR	3E-7				Illumina [~ 550000]	N
1036	chr1	59194996	59194999	rs201030007	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	1p32.1		rs201030007-T	0.897	4E-6		0.083	[0.048-0.118] unit decrease	Affymetrix [6030650] (imputed)	N
1037	chr1	59304766	59304767	rs942123	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p32.1	MYSM1	rs942123-?	NR	5E-6	(aminoadipic acid)	0.5429422	[0.31-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1037	chr1	59319002	59319003	rs2984913	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p32.1	NR	rs2984913-T	NR	5E-6	(female)	0.1143	[0.065-0.163] unit increase	Illumina [11133794] (imputed)	N
1037	chr1	59325625	59325626	rs4601609	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1p32.1	JUN	rs4601609-?	0.04517	5E-6	(PRM)			Illumina [475971]	N
1037	chr1	59342664	59342665	rs2764894	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p32.1	RP4-794H19.2, JUN, PHBP3, MYSM1	rs2764894-A	NR	8E-6	(sleep offset)	0.1815	[0.1-0.26] unit increase	Affymetrix [7141204] (imputed)	N
1038	chr1	59424885	59424885	rs201265676	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1p32.1		rs201265676-CCT	NR	2E-6		5.0368	[3-7.08] unit increase	Illumina [NR] (imputed)	N
1038	chr1	59432115	59432115	rs780485617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p32.1	PHBP3	rs780485617-C	NR	1E-8		0.0202226	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1038	chr1	59471630	59471631	rs12023539	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p32.1	NR	rs12023539-?	NR	2E-7				Illumina [at least 7383741] (imputed)	N
1038	chr1	59483319	59483320	rs12030196	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	1p32.1	intergenic	rs12030196-?	NR	3E-8				Affymetrix [905761]	N
1039	chr1	59531542	59531543	rs192315283	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	1p32.1	HSD52	rs192315283-C	0.01	4E-7		0.126	[0.077-0.175] unit increase	Affymetrix [up to 73355677] (imputed)	N
1039	chr1	59553661	59553662	rs2989868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p32.1	Intergenic	rs2989868-A	0.4783	1E-15	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr1	59556846	59556847	rs4543825	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	1p32.1	NR	rs4543825-A	0.212	2E-6		0.1678	[0.099-0.236] unit decrease	Illumina [7305641] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p32.1	NR	rs1831539-T	0.461233	2E-10		0.040138993	[0.028-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p32.1	Intergenic	rs1831539-T	0.5219	5E-14	(MTAG)	0.0125	[0.0092-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.1	Intergenic	rs1831539-T	0.5213	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p32.1	Intergenic	rs1831539-T	0.5163	9E-15	(MTAG)	0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p32.1	Intergenic	rs1831539-T	0.5163	1E-10		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p32.1	NR	rs1831539-T	NR	5E-10		6.228	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1039	chr1	59560336	59560337	rs1831539	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p32.1	NR	rs1831539-?	NR	9E-8		5.355	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1039	chr1	59561366	59561367	rs6668586	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p32.1		rs6668586-?	NR	2E-9				NR [7857346] (imputed)	N
1039	chr1	59561366	59561367	rs6668586	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p32.1	ENSG00000237352	rs6668586-A	NR	5E-9		0.017981103	[0.012-0.024] unit increase	Affymetrix [NR]	N
1039	chr1	59562348	59562349	rs114480503	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.1	NR	rs114480503-A	0.0122	4E-9	(FERMT2)	0.08268	NR unit increase	Illumina [1671387] (imputed)	N
1039	chr1	59564372	59564373	rs2989871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p32.1	Intergenic	rs2989871-C	0.462	8E-12		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1039	chr1	59576273	59576274	rs149159774	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1p32.1	LINC01358	rs149159774-A	0.9934	9E-6		0.3506	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1039	chr1	59605196	59605197	rs12144699	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment	1,639  European ancestry bipolar disorder responder cases, 8,899 European ancestry controls	NA	1p32.1	OR4F16, OR4F29, LOC729467, LOC100133331, LOC100132287, FGGY	rs12144699-A	0.04	6E-7		1.67	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1039	chr1	59614379	59614380	rs10889130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p32.1		rs10889130-A	NR	1E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1039	chr1	59614379	59614380	rs10889130	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p32.1	HSD52, FGGY	rs10889130-A	0.327	5E-7	(EA, initial)	0.263	[0.16-0.36] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1039	chr1	59614379	59614380	rs10889130	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p32.1	HSD52, FGGY	rs10889130-A	0.327	3E-20		0.288	[0.23-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1039	chr1	59622218	59622219	rs12563096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p32.1	NR	rs12563096-A	NR	5E-9		0.0156	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1039	chr1	59635970	59635971	rs11207415	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	1p32.1	HSD52	rs11207415-?	NA	3E-6		0.377	[0.22-0.54] unit decrease	Illumina [6690240] (imputed)	N
1040	chr1	59644081	59644082	rs12745935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p32.1		rs12745935-G	NR	1E-14		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1040	chr1	59644081	59644082	rs12745935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p32.1		rs12745935-G	NR	7E-53		0.0358	[0.031-0.04] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1040	chr1	59644081	59644082	rs12745935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p32.1	NR	rs12745935-G	0.29965200000000003	2E-8		0.00780868	[0.005-0.0106] unit increase	Affymetrix [16578495] (imputed)	N
1040	chr1	59650828	59650829	rs11207423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p32.1		rs11207423-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1040	chr1	59651062	59651063	rs12130314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p32.1	NR	rs12130314-T	NR	3E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1040	chr1	59651062	59651063	rs12130314	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p32.1	NR	rs12130314-T	NR	2E-15		0.0212	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1040	chr1	59653741	59653742	rs3889199	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p32.1	FGGY	rs3889199-A	0.71	2E-24		0.351	[0.29-0.41] unit increase	Affymetrix [~ 9800000] (imputed)	N
1040	chr1	59656908	59656909	rs34370185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.1	FGGY	rs34370185-G	0.726029	2E-9	(132 ms)	0.0367314	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1040	chr1	59656908	59656909	rs34370185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p32.1	FGGY	rs34370185-G	0.726029	1E-8	(130 ms)	0.0354657	[0.023-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1040	chr1	59656908	59656909	rs34370185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.1	NR	rs34370185-T	0.253933	8E-10				Affymetrix, Illumina [24558453] (imputed)	N
1040	chr1	59656908	59656909	rs34370185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p32.1	NR	rs34370185-T	0.286033	6E-11		0.013348	[0.0093-0.0173] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1040	chr1	59656908	59656909	rs34370185	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.1	intergenic	rs34370185-T	0.3823	1E-12		0.2019	[0.15-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
1040	chr1	59663340	59663341	rs60199046	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p32.1	HSD52, MIR4711	rs60199046-A		3E-8		0.24	unit increase	Affymetrix [at least 2696785] (imputed)	N
1040	chr1	59663340	59663341	rs60199046	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.1	HSD52, MIR4711	rs60199046-A		3E-7	(EA)	0.228	unit increase	Affymetrix [at least 2696785] (imputed)	N
1040	chr1	59663340	59663341	rs60199046	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1p32.1	HSD52, MIR4711	rs60199046-A		1E-9		0.25	unit increase	Affymetrix [at least 2696785] (imputed)	N
1040	chr1	59663340	59663341	rs60199046	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p32.1	HSD52, MIR4711	rs60199046-A		1E-27		0.313	unit increase	Affymetrix [at least 2696785] (imputed)	N
1040	chr1	59672255	59672256	rs34735131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p32.1		rs34735131-G	NR	1E-14		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1040	chr1	59677575	59677576	rs371398972	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	1p32.1	HSD52	rs371398972-C	NR	2E-6	(conditioned on rs192315283)	0.76	[0.45-1.07] unit increase	Affymetrix [up to 73355677] (imputed)	N
1040	chr1	59680245	59680246	rs6678642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p32.1	JUN, FGGY	rs6678642-T	0.66	2E-10		6.34	z-score increase	Affymetrix [4314223] (imputed)	N
1040	chr1	59680535	59680536	rs7543389	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p32.1	intergenic	rs7543389-G	0.7371	1E-26		0.3066	[0.25-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
1040	chr1	59685918	59685919	rs11207426	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	1p32.1	FGGY	rs11207426-A	0.37	3E-9		0.017	[0.011-0.023] cm increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1040	chr1	59690601	59690602	rs12402265	25420145	Debette S	2014-11-24	Nat Genet	Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection.	Cervical artery dissection	1,393 European ancestry cases, 14,416 European ancestry controls	659 European ancestry cases, 2,648 European ancestry controls	1p32.1	FGGY	rs12402265-A	0.27	2E-7		1.23	[1.14-1.33]	Illumina [472862]	N
1040	chr1	59737891	59737892	rs147410855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p32.1	Intergenic	rs147410855-C	0.995	4E-7	(AA)	0.153	unit increase	Illumina [NR] (imputed)	N
1040	chr1	59744902	59744903	rs12568622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p32.1		rs12568622-A	NR	4E-8		0.0114	[0.0073-0.0155] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1040	chr1	59762467	59762468	rs835367	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.1	FGGY	rs835367-G	0.371	2E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1041	chr1	59799160	59799161	rs17119280	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	1p32.1	FGGY	rs17119280-?	NR	7E-6	(SAS)			Affymetrix [492000]	N
1041	chr1	59840051	59840052	rs835436	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	1p32.1	FGGY	rs835436-T		3E-6		0.243	[0.14-0.34] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1041	chr1	59853318	59853319	rs7534016	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p32.1	FGGY	rs7534016-G	0.255	5E-6	(HOMA-IR)	0.03	[NR] unit increase	Illumina [899892]	N
1041	chr1	59874081	59874082	rs585368	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	1p32.1		rs585368-T	0.69938	3E-9		0.0453891	[0.031-0.06] decrease	Affymetrix [NR]	N
1042	chr1	59915097	59915098	rs12060527	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	1p32.1	NR	rs12060527-?		2E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1042	chr1	59948609	59948610	rs11581161	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p32.1	HOOK1	rs11581161-?	NR	6E-7	(LPE 16:0)	1.6285368	[0.99-2.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1042	chr1	59964313	59964314	rs11808336	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	1p32.1	FGGY	rs11808336-?	NR	6E-8	(EA)	0.0098	[0.0092-0.0104] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1042	chr1	59967593	59967594	rs17119531	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	1p32.1	FGGY	rs17119531-?	NR	4E-6		0.0126	[0.012-0.013] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1043	chr1	60084515	60084516	rs12727131	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	1p32.1	FGGY	rs12727131-?	NR	3E-6				Illumina [874956]	N
1043	chr1	60121427	60121428	rs72666268	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	1p32.1	NR	rs72666268-?	NR	6E-8		0.3331	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1043	chr1	60140246	60140247	rs7516441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p32.1	FGGY	rs7516441-A	0.12407	5E-15		0.026941098	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr1	60140246	60140247	rs7516441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p32.1	FGGY	rs7516441-A	0.124067	6E-10		0.021250384	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr1	60140246	60140247	rs7516441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p32.1	NR	rs7516441-A	0.120928	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1043	chr1	60140246	60140247	rs7516441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p32.1	NR	rs7516441-A	0.125476	4E-13		0.021961	[0.016-0.028] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1045	chr1	60348345	60348346	rs12747808	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p32.1		rs12747808-T	0.836	4E-11		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1045	chr1	60357968	60357969	rs10789082	34621292	Sampathkumar A	2021-09-21	Front Genet	Genetic Link Determining the Maternal-Fetal Circulation of Vitamin D.	Midgestational total 25-hydroxyvitamin D levels (antenatal blood)	up to 520 Chinese ancestry pregnant female individuals, up to 175 Indian ancestry pregnant female individuals, up to 247 Malay ancestry pregnant female individuals	NA	1p32.1		rs10789082-G	0.294	2E-8		7.68	unit decrease	Illumina [6978879] (imputed)	N
1045	chr1	60397559	60397560	rs79840548	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	1p32.1	NR	rs79840548-?	NR	6E-15				Affymetrix, Illumina [6210360] (imputed)	N
1046	chr1	60433075	60433076	rs752223	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	1p32.1	NR	rs752223-A	0.0818	7E-15		0.5602	[0.42-0.7] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
1046	chr1	60451852	60451853	rs77613911	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p32.1	NR	rs77613911-C	0.0366	2E-8		0.0161799	[0.011-0.022] unit increase	NR [9732723] (imputed)	N
1046	chr1	60474406	60474407	rs148672699	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	1p32.1	C1orf87, CYP2J2, PGBD4P8, HOOK1	rs148672699-?		1E-6		2.758621	[1.89-4.00]	Illumina [9389922] (imputed)	N
1046	chr1	60549058	60549059	rs3958719	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p32.1	C1orf87, PGBD4P8, CYP2J2, HOOK1	rs3958719-T	NR	2E-6	(sleep onset irregularity)	0.05958	[0.035-0.084] unit decrease	Affymetrix [7141204] (imputed)	N
1047	chr1	60557595	60557596	rs680191	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p32.1	NR	rs680191-G	0.0331	6E-10	(F2)	0.0228	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr1	60602823	60602824	rs619806	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p32.1	NR	rs619806-A	0.144	9E-6	(IFNalpha_STAT1_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1047	chr1	60646562	60646563	rs7547473	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	1p32.1	C1orf87, LINC01748	rs7547473-A	0.4727	9E-7	(female)	0.0901	[0.054-0.126] unit decrease	NR [NR] (imputed)	N
1048	chr1	60691587	60691588	rs17120400	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	1p32.1	C1orf87	rs17120400-?	0.9	4E-6	(Age 20-60 years)	1.69	[1.35-2.13]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1048	chr1	60704249	60704250	rs185053659	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	1p32.1	C1orf87	rs185053659-A	0.0142	8E-6		3.7968		Illumina [7559010] (imputed)	N
1048	chr1	60754054	60754055	rs12751178	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p32.1		rs12751178-A	0.863	5E-12		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
1049	chr1	60913142	60913143	rs72673419	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p32.1	C1orf87	rs72673419-T	0.05	4E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [6224355] (imputed)	N
1049	chr1	60948124	60948125	rs72673442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p32.1		rs72673442-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1050	chr1	60950127	60950127	rs200376730	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	1p32.1	NR	rs200376730-A	0.4333	3E-6		0.1424	[0.083-0.202] unit increase	Illumina [10677593] (imputed)	N
1050	chr1	60966771	60966772	rs72673461	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p32.1	LOC101926964	rs72673461-T	0.9507	3E-6		0.0272	[0.016-0.039] unit increase	Affymetrix [19819130] (imputed)	N
1050	chr1	60966771	60966772	rs72673461	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p32.1	LOC101926964	rs72673461-T	0.9507	3E-20		0.0508	[0.04-0.062] unit increase	Affymetrix [19819130] (imputed)	N
1050	chr1	60966771	60966772	rs72673461	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p32.1	LOC101926964	rs72673461-T	0.9507	9E-7		0.0265	[0.016-0.037] unit increase	Affymetrix [19819130] (imputed)	N
1050	chr1	60983619	60983620	rs7522454	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Hip bone mineral content accrual during adolescent growth spurt	125 women, 133 men	NA	1p32.1	NR	rs7522454-A	0.3	7E-6	(Female)	0.52	[0.3-0.74] g decrease	Illumina [509842]	N
1050	chr1	60992155	60992156	rs76600213	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p32.1	NR	rs76600213-T	NR	8E-6	(GEE model)	0.99358	[0.56-1.43] unit increase	NR [NR] (imputed)	N
1050	chr1	60996970	60996971	rs4523542	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	1p32.1	NR	rs4523542-?	NR	2E-8	(Quadrant II (Nose), Segment 47)	0.029331395	NR unit decrease	NR [7417619] (imputed)	N
1050	chr1	60997569	60997570	rs4916068	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	1p32.1	Intergenic	rs4916068-?	NR	5E-10	(facial module 41)			Illumina [9478608] (imputed)	N
1050	chr1	61020498	61020499	rs4916071	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p32.1		rs4916071-A	0.475923127	2E-51				Illumina [7417619] (imputed)	N
1050	chr1	61028681	61028682	rs576872056	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC01748	rs576872056-?	NR	8E-13	(female)	0.696827	[NR] unit increase	Affymetrix [NR] (imputed)	N
1050	chr1	61041874	61041875	rs12565755	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	1p32.1	intergenic	rs12565755-?	0.14	5E-8	(CHAQ, EA, RF-)	0.39	[NR] unit decrease	Illumina [534053]	N
1050	chr1	61058815	61058816	rs1563953	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p32.1	NR	rs1563953-?	NR	6E-6		0.0795011	[0.045-0.114] unit decrease	NR [13958389] (imputed)	N
1050	chr1	61059258	61059259	rs2989476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p32.1		rs2989476-C	0.4193	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1050	chr1	61059258	61059259	rs2989476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p32.1	Intergenic	rs2989476-C	0.4193	9E-9	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr1	61059258	61059259	rs2989476	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	1p32.1	NFIA	rs2989476-C	NR	3E-6		1.16	[NR]	Affymetrix [703019]	N
1050	chr1	61059258	61059259	rs2989476	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	1p32.1	NR	rs2989476-?	NR	2E-6	(dominant)			Affymetrix [NR]	N
1050	chr1	61060279	61060280	rs7555117	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	1p32.1	NR	rs7555117-C	0.4856	2E-6		0.1443	[0.086-0.203] unit decrease	Illumina [10677593] (imputed)	N
1050	chr1	61064207	61064208	rs12070615	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p32.1	intergenic	rs12070615-T	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1051	chr1	61079791	61079792	rs1841565	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs1841565-?	NR	5E-8				NR [2625067]	N
1051	chr1	61085926	61085927	rs579728	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p32.1	NR	rs579728-G		1E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1051	chr1	61092455	61092456	rs814197	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1p32.1	intergenic	rs814197-G	0.44799999999999995	2E-6		1.0537963		NR [9372253] (imputed)	N
1051	chr1	61093839	61093840	rs546671	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	1p32.1	NR	rs546671-A	0.447	4E-7		1.07929		NR [9372253] (imputed)	N
1051	chr1	61095557	61095558	rs472913	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	1p32.1	NF1A	rs472913-C	0.50	2E-7		1.18	[1.11-1.25]	Affymetrix, Illumina [2366197] (imputed)	N
1051	chr1	61103199	61103200	rs514512	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p32.1	NR	rs514512-?	NR	3E-8		0.112951	[0.073-0.153] unit decrease	NR [13958389] (imputed)	N
1051	chr1	61104158	61104159	rs571017	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	1p32.1		rs571017-?	NR	4E-9		0.0207	NR unit increase	NR [5637374] (imputed)	N
1051	chr1	61105667	61105668	rs2126180	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	1p32.1	LINC01748	rs2126180-G	0.543	2E-9		0.94497	[0.93-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1051	chr1	61134075	61134076	rs72677097	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33+ HLA DR+ CD14-	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p32.1		rs72677097-G	0.08551	1E-8		0.3805	[0.25-0.51] unit increase	Illumina [16961968] (imputed)	N
1051	chr1	61205468	61205469	rs1514178	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	1p32.1	NFIA	rs1514178-T	NR	2E-7		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1052	chr1	61243319	61243320	rs12085223	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1p32.1	SLC7A14, LOC101926964	rs12085223-?	NR	2E-6		2.49		Illumina [6778521] (imputed)	N
1052	chr1	61265634	61265635	rs2211560	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	1p32.1	NR	rs2211560-T	0.4546	7E-7		0.149	[0.09-0.208] unit decrease	Illumina [10677593] (imputed)	N
1052	chr1	61275270	61275271	rs661526	33640202	Kim BH	2021-02-03	Neurobiol Aging	Genome-wide association study identifies susceptibility loci of brain atrophy to NFIA and ST18 in Alzheimer's disease.	Left parahippocampal gyrus cortical thickness	919 European ancestry individuals	629 individuals	1p31.3		rs661526-?	NR	3E-9	(EA)			Illumina [3041429] (imputed)	N
1052	chr1	61287631	61287632	rs677669	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p31.3	NR	rs677669-?	NR	2E-6		0.104153	[0.061-0.147] unit increase	NR [13958389] (imputed)	N
1052	chr1	61324812	61324813	rs556161	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p31.3	NFIA	rs556161-?		2E-28				Affymetrix, Illumina [NR] (imputed)	N
1052	chr1	61341631	61341632	rs479445	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	1p31.3	NR	rs479445-A	0.3264	9E-11		0.0481	[0.034-0.063] unit decrease	Illumina [~ 10600000] (imputed)	N
1052	chr1	61341631	61341632	rs479445	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	1p31.3	C1orf87, NFIA	rs479445-?	NR	6E-13		1.0570824	[1.04-1.07]	Illumina [13762925] (imputed)	N
1052	chr1	61341636	61341637	rs876214	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p31.3	NR	rs876214-A		1E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
1053	chr1	61342228	61342229	rs11589487	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1p31.3	AK097193, BC030753	rs11589487-A	0.4451	3E-11		6.665	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1053	chr1	61398275	61398276	rs12142431	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		NFIA-AS2	rs12142431-C	0.06	6E-6		0.2	[0.11-0.29] unit decrease	Illumina [1679420] (imputed)	N
1053	chr1	61412130	61412131	rs17121331	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	1p31.3	NFIA, AS2	rs17121331-G		5E-6				Illumina [1690491] (imputed)	N
1053	chr1	61417728	61417729	rs1572312	25729143	Ahmetov I	2014-10-21	Biol Sport	Genome-wide association study identifies three novel genetic markers associated with elite endurance performance.	Maximal oxygen uptake response	15 Russian ancestry male long endurance athletes, 17 Russian ancestry female long endurance athletes, 31 Russian ancestry middle and short endurance athletes, 17 Russian ancestry middle and short endurance athletes	NA	1p31.3	NFIA-AS2	rs1572312-C	NR	2E-6	(FLE, MMSE, FMSE, MA, FA)			Illumina [1140419]	N
1053	chr1	61455133	61455134	rs80126911	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	1p31.3	NR	rs80126911-?	NR	7E-6		0.05584	[0.032-0.08] unit decrease	Affymetrix [9658292] (imputed)	N
1054	chr1	61590305	61590306	rs17121639	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	1p31.3	NFIA	rs17121639-?	NR	3E-6		0.017	[0.0098-0.0242] unit decrease	Illumina [5527232] (imputed)	N
1054	chr1	61596555	61596556	rs17121650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p31.3		rs17121650-T	0.106257	3E-8		0.0181559	[0.012-0.025] unit increase	Illumina [13479295] (imputed)	N
1055	chr1	61608472	61608473	rs334729	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	1p31.3	NR	rs334729-G	0.95	8E-7		0.7	[0.60-0.80]	Illumina [9673063] (imputed)	N
1055	chr1	61610048	61610049	rs334725	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p31.3	NFIA	rs334725-A	0.946439906158136	3E-50		0.1592	[0.14-0.18] SD increase	Illumina [22400000] (imputed)	N
1055	chr1	61620495	61620496	rs334699	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p31.3	NFIA	rs334699-A	0.052	6E-7	(TSH - Males)	0.149	[0.09-0.208] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr1	61620495	61620496	rs334699	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p31.3	NFIA	rs334699-A	0.052	5E-12	(TSH)	0.141	[0.1-0.182] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr1	61620495	61620496	rs334699	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	1p31.3	NFIA	rs334699-A	0.052	2E-7	(TSH - Females)	0.143	[0.09-0.196] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr1	61620860	61620861	rs145373037	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	1p31.3	NFIA	rs145373037-?	NR	2E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1055	chr1	61638520	61638521	rs334721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p31.3		rs334721-C	NR	8E-9		0.5473	[0.36-0.73] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
1055	chr1	61644674	61644675	rs75660521	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	NFIA	rs75660521-C	0.93986	3E-9		0.022789	[0.015-0.03] unit increase	NR [13737936] (imputed)	N
1055	chr1	61646375	61646376	rs871250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs871250-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1055	chr1	61653842	61653843	rs11207707	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs11207707-?	NR	1E-12		0.0287911	[0.021-0.037] unit increase	Affymetrix [20259828] (imputed)	N
1055	chr1	61658685	61658686	rs74762505	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p31.3	NR	rs74762505-?	NR	9E-9				Illumina [7760689] (imputed)	N
1055	chr1	61670581	61670582	rs75481391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs75481391-A	NR	1E-9		0.0284	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr1	61670758	61670759	rs74328314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p31.3		rs74328314-G	NR	5E-9		0.0259	[0.017-0.035] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1055	chr1	61670758	61670759	rs74328314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p31.3	NFIA	rs74328314-A	0.926466	1E-9		0.0225872	[0.015-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1055	chr1	61671908	61671909	rs55878063	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs55878063-G	NR	4E-6		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr1	61671908	61671909	rs55878063	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs55878063-G	0.933	1E-6	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr1	61671908	61671909	rs55878063	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs55878063-G	NR	2E-8		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr1	61671908	61671909	rs55878063	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs55878063-G	0.933	1E-6	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr1	61681499	61681500	rs333146	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	1p31.3		rs333146-A	0.1921	7E-6		0.6203	[0.5036-0.7642]	Affymetrix [7975321] (imputed)	N
1055	chr1	61682307	61682308	rs868110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p31.3		rs868110-G	NR	1E-8		0.0254	[0.017-0.034] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1055	chr1	61684287	61684288	rs9970140	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p31.3	NFIA	rs9970140-A	0.924729	1E-11		0.0254959	[0.018-0.033] unit increase	Affymetrix [NR] (imputed)	N
1055	chr1	61684287	61684288	rs9970140	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p31.3	NR	rs9970140-G	0.07597200000000004	7E-12		0.0401518	[0.029-0.051] unit increase	Affymetrix [16577313] (imputed)	N
1055	chr1	61687650	61687651	rs59708846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p31.3	NR	rs59708846-A	0.07621199999999995	1E-20		0.0192318	[0.015-0.023] unit increase	Affymetrix [16582621] (imputed)	N
1055	chr1	61687650	61687651	rs59708846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p31.3	NR	rs59708846-A	0.07621199999999995	8E-18		0.0194856	[0.015-0.024] unit increase	Affymetrix [16582614] (imputed)	N
1055	chr1	61690160	61690161	rs76732304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p31.3		rs76732304-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1055	chr1	61693017	61693017	rs144613238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p31.3	NR	rs144613238-AATTT	0.07604	1E-37		0.0194602	[0.016-0.023] unit increase	Affymetrix [16582909] (imputed)	N
1055	chr1	61693017	61693017	rs144613238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p31.3	NR	rs144613238-AATTT	0.07604	1E-26		0.0181958	[0.015-0.022] unit increase	Affymetrix [16582965] (imputed)	N
1055	chr1	61700258	61700259	rs17377218	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p31.3	NFIA	rs17377218-?	NR	4E-9		1.096371	NR	Affymetrix [9154080] (imputed)	N
1055	chr1	61705897	61705898	rs74090351	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p31.3	NR	rs74090351-A	0.06876700000000002	6E-18		0.0193877	[0.015-0.024] unit increase	Affymetrix [16585854] (imputed)	N
1055	chr1	61705897	61705898	rs74090351	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p31.3	NR	rs74090351-A	0.06876700000000002	6E-10		0.0159623	[0.01-0.021] unit increase	Affymetrix [16585866] (imputed)	N
1055	chr1	61712917	61712918	rs333166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p31.3	NR	rs333166-C	NR	4E-9		0.024	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1056	chr1	61738635	61738636	rs446952	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1p31.3	NFIA	rs446952-T	0.4588	4E-9		0.015266644	[0.01-0.02] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1056	chr1	61738635	61738636	rs446952	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p31.3	NFIA	rs446952-T	0.4589	3E-12		0.01657852	[0.012-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1056	chr1	61742692	61742693	rs332828	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	1p31.3	NFIA	rs332828-G	0.54188	8E-13		0.00522319	[0.0038-0.0067] unit decrease	NR [NR] (imputed)	N
1056	chr1	61742692	61742693	rs332828	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1p31.3	NR	rs332828-A	NR	4E-8		0.01315	[0.0085-0.0178] unit increase	Affymetrix [10847151] (imputed)	N
1056	chr1	61742692	61742693	rs332828	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	1p31.3	NFIA	rs332828-A	0.448949	2E-9		6.0	z score increase	NR [10847151] (imputed)	N
1056	chr1	61743159	61743160	rs332827	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.3		rs332827-G	0.542	3E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1056	chr1	61743159	61743160	rs332827	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Coronary artery disease	29,319 Japanese ancestry cases, 183,134 Japanese ancestry controls	2,855 Japanese ancestry cases, 15,211 Japanese ancestry controls	1p31.3		rs332827-?	NR	1E-7		1.0522777	[1.03256141696704-1.0723704457929]	Illumina [8919992] (imputed)	N
1056	chr1	61743159	61743160	rs332827	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p31.3	NFIA	rs332827-A	0.457	5E-14		0.0089	[0.0065-0.0113] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1056	chr1	61791862	61791863	rs6691768	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	1p31.3	NFIA	rs6691768-?		1E-9		1.1220081		Illumina [252970]	N
1056	chr1	61791862	61791863	rs6691768	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	1p31.3	NFIA	rs6691768-?	NR	2E-8		0.1065	unit increase	Illumina [up to 143074]	N
1056	chr1	61791862	61791863	rs6691768	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1p31.3	NFIA	rs6691768-?	0.62	1E-7		1.11	[1.06-1.15]	Illumina [292387]	N
1056	chr1	61803688	61803688	rs143661929	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs143661929-?	NR	1E-9		0.0136775	[0.0089-0.0184] unit increase	Affymetrix [20259828] (imputed)	N
1056	chr1	61806351	61806352	rs12034786	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	NFIA	rs12034786-A	0.760935	3E-9		0.0128175	[0.0086-0.017] unit increase	NR [13737936] (imputed)	N
1056	chr1	61808443	61808444	rs4915735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.3		rs4915735-A	0.1408	1E-8		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1056	chr1	61808443	61808444	rs4915735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.3	Intergenic	rs4915735-A	0.1408	2E-11	(MTAG)	0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr1	61809085	61809086	rs6696260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs6696260-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1056	chr1	61815798	61815799	rs41350144	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	1p31.3	NF1A	rs41350144-T	0.477	3E-7	(SM vs. NSM)	2.269	[1.66-3.11]	Affymetrix [703012]	N
1056	chr1	61830333	61830334	rs4406666	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.3	Intergenic	rs4406666-T	0.8612	3E-9	(MTAG)	0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr1	61832444	61832445	rs6674884	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.3	Intergenic	rs6674884-A	0.8616	3E-12	(MTAG)	0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr1	61832444	61832445	rs6674884	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.3	Intergenic	rs6674884-A	0.859	2E-8	(MTAG)	0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr1	61836191	61836192	rs76276668	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs76276668-G	0.91	3E-6		1.02	[-1.0184-3.0584]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61837587	61837588	rs7533561	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs7533561-G	0.9	2E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61839729	61839730	rs72666653	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs72666653-T	0.9	1E-6		1.19	[-0.9268-3.3068]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs1884368-T	0.26	1E-23		10.03	z score increase	Affymetrix [9061022] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p31.3		rs1884368-T	0.26	7E-17		8.35	z score increase	Affymetrix [9061022] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.3		rs1884368-T	0.26	3E-19		8.97	z score increase	Affymetrix [9061022] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1884368-T	0.2335	2E-17				NR [9056863] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1884368-T	0.2335	1E-17				NR [9056863] (imputed)	N
1056	chr1	61839972	61839973	rs1884368	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 177)	19,670 European ancestry individuals	NA	1p31.3		rs1884368-?	NR	3E-14				NR [9705931] (imputed)	N
1056	chr1	61840948	61840949	rs58054723	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs58054723-G	0.91	2E-6		1.01	[-1.0088-3.0288]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61842616	61842617	rs72666658	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs72666658-G	0.91	5E-6		1.09	[-1.0072-3.1872]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61842919	61842920	rs72666659	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs72666659-G	0.09	4E-6		1.0309278	[-1.04667-3.10853]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61846932	61846933	rs10489910	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.3	NR	rs10489910-G	0.9	3E-6		1.03	[-1.028-3.088]	Affymetrix [at least 143006] (imputed)	N
1056	chr1	61862685	61862685	rs397695877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p31.3		rs397695877-CA	NR	4E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1057	chr1	61871355	61871356	rs7535730	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	1p31.3	NFIA	rs7535730-G	0.18	2E-6		0.236	[0.14-0.33] unit increase	Illumina [NR] (imputed)	N
1057	chr1	61873676	61873677	rs9436640	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	1p31.3	NR	rs9436640-?	NR	2E-8		0.5319364	[0.35-0.72] unit decrease	Illumina [26566045] (imputed)	N
1057	chr1	61873676	61873677	rs9436640	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p31.3	NR	rs9436640-?	NR	3E-18	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1057	chr1	61873676	61873677	rs9436640	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p31.3	NR	rs9436640-?	NR	4E-14	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1057	chr1	61886598	61886599	rs12142600	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1p31.3	NFIA	rs12142600-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-24	(162 ms)	0.0574433	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-23	(148 ms)	0.055043	[0.043-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-19	(114 ms)	0.0515568	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-18	(202 ms)	0.0488634	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-17	(208 ms)	0.0483093	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-16	(94 ms)	0.0480747	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-15	(244 ms)	0.0461709	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	9E-13	(248 ms)	0.0430155	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	8E-9	(60 ms)	0.034056	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	8E-24	(134 ms)	0.0576892	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	8E-16	(226 ms)	0.0464158	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	8E-11	(264 ms)	0.039883	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	7E-24	(158 ms)	0.0583466	[0.047-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	7E-19	(170 ms)	0.0511709	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	7E-17	(80 ms)	0.0484833	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	7E-17	(186 ms)	0.0480779	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	7E-15	(78 ms)	0.0454826	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	6E-9	(272 ms)	0.0352941	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	6E-18	(178 ms)	0.04934	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	6E-12	(66 ms)	0.0407915	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-24	(132 ms)	0.05847	[0.047-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-22	(102 ms)	0.0561218	[0.044-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-19	(182 ms)	0.0513334	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-19	(172 ms)	0.0514882	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-17	(204 ms)	0.0475306	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-16	(224 ms)	0.0463369	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-15	(90 ms)	0.0465419	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-14	(234 ms)	0.0441986	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-12	(250 ms)	0.0417119	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	5E-11	(262 ms)	0.0405594	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-8	(276 ms)	0.0333581	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-24	(160 ms)	0.0586571	[0.047-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-23	(164 ms)	0.0561296	[0.044-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-22	(116 ms)	0.056637	[0.045-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-21	(138 ms)	0.0545456	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-21	(136 ms)	0.0545312	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-19	(98 ms)	0.052033	[0.04-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-17	(200 ms)	0.0482369	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-17	(192 ms)	0.0483235	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-16	(86 ms)	0.0471524	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-16	(230 ms)	0.0469184	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-16	(198 ms)	0.0465661	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-16	(196 ms)	0.0464777	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-14	(238 ms)	0.0445717	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-11	(72 ms)	0.0386969	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	4E-11	(260 ms)	0.040668	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-9	(70 ms)	0.0356581	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-9	(270 ms)	0.0361869	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-27	(142 ms)	0.0626037	[0.051-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-22	(156 ms)	0.0560793	[0.044-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-21	(168 ms)	0.0537872	[0.042-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-21	(106 ms)	0.0546447	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-19	(176 ms)	0.050831	[0.039-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-18	(96 ms)	0.0516896	[0.04-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-18	(190 ms)	0.050592	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-16	(228 ms)	0.0472711	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-16	(222 ms)	0.0474795	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-16	(112 ms)	0.0475907	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-15	(220 ms)	0.0449024	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-14	(92 ms)	0.0445711	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-13	(74 ms)	0.0430233	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	3E-10	(64 ms)	0.0366531	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-9	(268 ms)	0.036963	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-8	(62 ms)	0.0324324	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-25	(140 ms)	0.0599482	[0.048-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-24	(150 ms)	0.0578596	[0.046-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-23	(152 ms)	0.0568514	[0.045-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-23	(130 ms)	0.0575273	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-22	(120 ms)	0.0562249	[0.045-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-20	(100 ms)	0.0536321	[0.042-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-19	(108 ms)	0.0527374	[0.041-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-17	(82 ms)	0.0489466	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-17	(188 ms)	0.0489396	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-16	(88 ms)	0.0484684	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-16	(210 ms)	0.0463568	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-16	(194 ms)	0.0473555	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-15	(216 ms)	0.0447319	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-15	(214 ms)	0.0453602	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-15	(212 ms)	0.0453941	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-14	(240 ms)	0.045559	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-13	(76 ms)	0.0433586	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-11	(258 ms)	0.0412063	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-11	(254 ms)	0.0407939	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-11	(252 ms)	0.0407384	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	2E-10	(266 ms)	0.0389628	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-8	(274 ms)	0.0346113	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-24	(144 ms)	0.0597452	[0.048-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-24	(118 ms)	0.0589567	[0.047-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-22	(166 ms)	0.0554507	[0.044-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-22	(126 ms)	0.0566167	[0.045-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-21	(154 ms)	0.0546184	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-21	(146 ms)	0.0543835	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-21	(104 ms)	0.055467	[0.044-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-20	(174 ms)	0.0537349	[0.042-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-20	(122 ms)	0.0543658	[0.043-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-18	(180 ms)	0.0509342	[0.039-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-17	(184 ms)	0.0492204	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-16	(206 ms)	0.0470614	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-16	(110 ms)	0.0485468	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-15	(84 ms)	0.0464096	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-14	(242 ms)	0.0459226	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-14	(232 ms)	0.0447154	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-14	(218 ms)	0.0438449	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-13	(246 ms)	0.0443065	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-13	(236 ms)	0.0435956	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-11	(256 ms)	0.0412575	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61886890	61886891	rs2474370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	NFIA	rs2474370-C	0.313659	1E-10	(68 ms)	0.0381636	[0.026-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1057	chr1	61894652	61894653	rs2207793	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	1p31.3	NFIA	rs2207793-T	0.43	4E-11	(QRS-T angle)	0.08	[0.056-0.104] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1057	chr1	61894652	61894653	rs2207793	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	1p31.3	NFIA	rs2207793-T	0.43	2E-10	(SVG azimuth)	0.08	[0.056-0.104] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1057	chr1	61894901	61894902	rs2207791	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p31.3	NFIA	rs2207791-A	0.69	1E-6	(African American)	0.62	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1057	chr1	61894901	61894902	rs2207791	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p31.3	NFIA	rs2207791-A	0.52	1E-17	(European)	0.59	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1057	chr1	61894901	61894902	rs2207791	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p31.3	NFIA	rs2207791-A		1E-22		0.6	[0.48-0.72] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		1p31.3	NR	rs6587924-A	0.50908	1E-10		0.067412	[0.047-0.088] unit increase	Affymetrix [14134301] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		1p31.3	NR	rs6587924-A	0.50908	2E-16		0.085892	[0.065-0.106] unit increase	Affymetrix [14134301] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		1p31.3	NR	rs6587924-A	0.50908	2E-14		0.080259	[0.06-0.101] unit increase	Affymetrix [14134301] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		1p31.3	NR	rs6587924-A	0.50908	5E-15		0.081666	[0.061-0.102] unit increase	Affymetrix [14134301] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		1p31.3	NR	rs6587924-A	0.50908	5E-6		0.047858	[0.027-0.068] unit increase	Affymetrix [14134301] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p31.3	NFIA	rs6587924-A	0.49	3E-8		0.35	[0.23-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p31.3	NFIA	rs6587924-A	0.5039	7E-7		0.3286	[0.2-0.46] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1057	chr1	61895256	61895257	rs6587924	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	1p31.3	NFIA	rs6587924-A	0.508	2E-21		0.822	[0.65-0.99] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1057	chr1	61897966	61897967	rs2207790	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	1p31.3	NR	rs2207790-?	NR	3E-9		0.5679002	[0.38-0.75] unit decrease	Illumina [26566045] (imputed)	N
1057	chr1	61897966	61897967	rs2207790	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p31.3	NFIA	rs2207790-?	NR	7E-19	(EA)	0.55	[0.43-0.67] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1057	chr1	61897966	61897967	rs2207790	23463857	Ritchie MD	2013-03-05	Circulation	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	1p31.3	NFIA	rs2207790-A	0.461	6E-18	(QRS duration - CHARGE)	0.5956	[NR] msec decrease	Illumina [528508]	N
1057	chr1	61911156	61911157	rs2261980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs2261980-A	0.29268	9E-10				Affymetrix, Illumina [24653286] (imputed)	N
1057	chr1	61911156	61911157	rs2261980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p31.3	NR	rs2261980-A	0.233044	2E-11		0.014852	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1057	chr1	61911156	61911157	rs2261980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p31.3	NR	rs2261980-A	0.233133	5E-11		0.014481	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1057	chr1	61911156	61911157	rs2261980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p31.3		rs2261980-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1057	chr1	61916786	61916787	rs12561869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs12561869-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1057	chr1	61925075	61925076	rs35067979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p31.3	NR	rs35067979-C	0.928864	2E-17		0.014596	[0.011-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1057	chr1	61925075	61925076	rs35067979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p31.3	NR	rs35067979-C	0.929278	1E-11		0.0162197	[0.012-0.021] unit increase	Affymetrix [16582621] (imputed)	N
1057	chr1	61925075	61925076	rs35067979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p31.3	NR	rs35067979-C	0.928864	2E-12		0.0134513	[0.0098-0.0172] unit increase	Affymetrix [16582965] (imputed)	N
1057	chr1	61925075	61925076	rs35067979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p31.3	NR	rs35067979-C	0.929278	2E-10		0.0166361	[0.012-0.022] unit increase	Affymetrix [16582614] (imputed)	N
1057	chr1	61943292	61943293	rs12119273	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p31.3	NFIA	rs12119273-A	0.0297	9E-6		0.135	[0.075-0.195] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1058	chr1	62058649	62058650	rs150591197	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p31.3	NR	rs150591197-?	NR	2E-6		0.314515	[0.18-0.44] unit decrease	NR [13958389] (imputed)	N
1058	chr1	62090536	62090537	rs1436238830	34101054	Nikopensius T	2021-06-08	Clin Rheumatol	Association analysis of juvenile idiopathic arthritis genetic susceptibility factors in Estonian patients.	Arthritis (oligoarticular juvenile idiopathic)	Up to 263 Estonian ancestry cases, up to 6,956 Estonian ancestry controls	NA	1p31.3	NFIA	rs1436238830-?	NR	5E-6		0.661	[0.540-0.809] unit decrease	Illumina [up to 16583468] (imputed)	N
1058	chr1	62101175	62101176	rs6668107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs6668107-C	0.219571	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
1058	chr1	62101175	62101176	rs6668107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.3	NR	rs6668107-C	0.236237	5E-11		0.014183	[0.01-0.0184] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p31.3		rs1933295-G	NR	1E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p31.3		rs1933295-G	NR	5E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p31.3		rs1933295-G	0.776295	2E-11		0.018164229	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p31.3	intergenic	rs1933295-A	0.223514	1E-18		0.023378193	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs1933295-G	0.800867	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p31.3	NR	rs1933295-G	0.776835	2E-11		0.015546	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs1933295-G	0.790357	4E-25				Affymetrix, Illumina [23467995] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p31.3	NR	rs1933295-G	0.776592	2E-25		0.02438	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1058	chr1	62107020	62107021	rs1933295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs1933295-G	0.789655	6E-10				Affymetrix, Illumina [23472807] (imputed)	N
1058	chr1	62114401	62114402	rs1890262	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	1p31.3	TM2D1, NFIA	rs1890262-?	NR	8E-7	(EA)	13.8	[8.31-19.29] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1058	chr1	62114401	62114402	rs1890262	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	1p31.3	TM2D1, NFIA	rs1890262-?	NR	2E-8	(EA)	14.9	[9.8-20] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1058	chr1	62119977	62119978	rs10789097	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p31.3	NR	rs10789097-G	NR	2E-8		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1058	chr1	62119977	62119978	rs10789097	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p31.3	NR	rs10789097-G	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
1059	chr1	62242937	62242938	rs7528744	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	1p31.3		rs7528744-C	NR	3E-6		2.688	[1.58-3.8] unit increase	NR [534934]	N
1060	chr1	62277232	62277233	rs72674640	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1p31.3		rs72674640-T	0.010069	4E-6		0.15718	[0.09-0.224] unit increase	Affymetrix [15580782] (imputed)	N
1060	chr1	62376469	62376470	rs2095092	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (social interaction)	2,509 individuals	NA	1p31.3	PATJ	rs2095092-?	NR	4E-8		0.53	NR unit decrease	Illumina [6900500] (imputed)	N
1060	chr1	62380222	62380223	rs11585422	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	1p31.3	INADL, TM2D1, MIR3116-1	rs11585422-T	0.23	7E-7		0.37	[0.23-0.51] unit increase	Illumina [8454806] (imputed)	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	8E-6	(BMI )	0.02	[NR] kg/m2 increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	7E-6	(Sleep energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	7E-6	(Leptin )	0.02	[NR] ng/mL increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	7E-6	(Bone mineral content )	0.02	[NR] kg increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	6E-6	(Total energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	3E-7	(Lean body mass )	0.03	[NR] kg increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	3E-7	(Fat free mass )	0.03	[NR] kg increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	3E-6	(Hip circumference )	0.02	[NR] cm increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	2E-7	(Trunk fat mass )	0.04	[NR] kg increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	2E-7	(Fat mass )	0.04	[NR] kg increase	Illumina [899892]	N
1060	chr1	62380297	62380298	rs1056513	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.3	INADL	rs1056513-A	0.495	1E-7	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
1061	chr1	62439386	62439387	rs11207881	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.3	NR	rs11207881-?	NR	4E-8				Affymetrix [NR]	N
1061	chr1	62468633	62468634	rs75383097	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	1p31.3	NR	rs75383097-G		4E-6		0.536	[0.31-0.76] SD units increase	NR [10700000] (imputed)	N
1061	chr1	62483622	62483623	rs41313250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs41313250-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1061	chr1	62483622	62483623	rs41313250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.3		rs41313250-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1061	chr1	62489015	62489016	rs12076492	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	1p31.3	INADL	rs12076492-A	NR	8E-7		0.156	[0.093-0.219] unit decrease	Illumina [7410776] (imputed)	N
1061	chr1	62521304	62521305	rs991191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs991191-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1062	chr1	62570320	62570321	rs1013293	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1p31.3		rs1013293-G	0.57	1E-6		0.009	mmol/L increase	NR [NR] (imputed)	N
1062	chr1	62570320	62570321	rs1013293	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p31.3		rs1013293-G	0.57	3E-17				NR [NR] (imputed)	N
1062	chr1	62570320	62570321	rs1013293	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1p31.3		rs1013293-G	0.57	3E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
1062	chr1	62570320	62570321	rs1013293	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p31.3		rs1013293-G	0.57	1E-22		0.015	% increase	NR [NR] (imputed)	N
1062	chr1	62575910	62575911	rs6688017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p31.3		rs6688017-A	NR	3E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.3		rs12140153-T	NR	1E-16		0.0297	[0.023-0.037] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.3		rs12140153-T	NR	6E-16		0.0328	[0.025-0.041] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p31.3		rs12140153-T	NR	5E-8		0.0212	[0.014-0.029] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p31.3	PATJ	rs12140153-G		7E-41		0.0211	[0.018-0.024] unit increase	Affymetrix [13304133] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p31.3	NR	rs12140153-G	0.9128	5E-8		0.0453	[0.029-0.062] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.3	INADL	rs12140153-G	0.905761	6E-19		0.021828	[0.017-0.027] unit increase	Affymetrix [12370749]	N
1062	chr1	62579890	62579891	rs12140153	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.3	INADL	rs12140153-G	0.905761	4E-19		0.0214472	[0.017-0.026] unit increase	Affymetrix [12370749]	N
1062	chr1	62579890	62579891	rs12140153	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs12140153-G	0.904289	3E-8		0.018959	[0.012-0.026] unit increase	NR [NR]	N
1062	chr1	62579890	62579891	rs12140153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs12140153-?	NR	4E-26				Affymetrix [~ 8270000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p31.3		rs12140153-T	0.0877	5E-12		0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p31.3	INADL	rs12140153-G	0.9108	7E-19		1.0558547		Affymetrix [11880941] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p31.3	INADL	rs12140153-G	0.9108	7E-19		1.0622613		Affymetrix [11880941] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p31.3		rs12140153-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.3		rs12140153-?	NR	8E-27				NR [~ 8900000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.3	NR	rs12140153-?	NR	8E-8		0.19796	[0.13-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.3	NR	rs12140153-?	NR	1E-9	(male)	0.27562	[0.19-0.36] unit decrease	Affymetrix [7794483] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p31.3	PATJ	rs12140153-G	0.9051	1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p31.3	NA	rs12140153-T	0.091	8E-10		0.0214	[0.015-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.3	NA	rs12140153-T	0.0911	1E-25		0.0353	[0.029-0.042] unit decrease	NR [~ 27400000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p31.3	NA	rs12140153-T	0.0911	1E-25		0.0353	[0.029-0.042] unit decrease	NR [~ 27400000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.3	NA	rs12140153-T	0.0911	1E-25		0.0353	[0.029-0.042] unit decrease	NR [~ 27400000] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	1p31.3	PATJ	rs12140153-?	0.099	1E-10				Affymetrix [up to 73355677] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	1p31.3	PATJ	rs12140153-T	0.099	7E-7		0.036	unit decrease	Affymetrix [up to 73355677] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1p31.3	INADL	rs12140153-G	0.9	4E-6		1.07	[1.04-1.1]	NR [16760980] (imputed)	N
1062	chr1	62579890	62579891	rs12140153	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1p31.3	INADL	rs12140153-G	0.9	3E-8		0.039	[0.025-0.053] unit increase	NR [16760980] (imputed)	N
1062	chr1	62587719	62587720	rs2012694	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	1p31.3	INADL	rs2012694-A	0.23920548302872047	7E-6	(AA)	0.3672	[0.21-0.53] unit decrease	Illumina [at least 988306] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p31.3	NR	rs2481665-C	0.4384	8E-13		0.017841762	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.3	NR	rs2481665-T	NR	1E-12		0.018	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.3	INADL	rs2481665-T	0.561	2E-8	(EA)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p31.3	INADL	rs2481665-T	0.561	4E-8	(EA)	0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.3	INADL	rs2481665-T	0.561	3E-11	(EA)	0.016	[0.012-0.02] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1062	chr1	62594676	62594677	rs2481665	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.3	INADL	rs2481665-T	0.57	6E-7		0.015	[0.0089-0.0207] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1062	chr1	62594676	62594677	rs2481665	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.3	INADL	rs2481665-T	0.566	7E-6	(EA, men)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1062	chr1	62594676	62594677	rs2481665	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.3	INADL	rs2481665-T	0.564	2E-7	(EA)	0.016	[0.0098-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1062	chr1	62597497	62597498	rs76221407	30582445	Mola-Caminal M	2019-01-01	Circ Res	PATJ Low Frequency Variants Are Associated With Worse Ischemic Stroke Functional Outcome.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,225 European ancestry individuals	1,791 European ancestry individuals	1p31.3	PATJ	rs76221407-?	NR	2E-9		0.4	[0.26-0.54] unit increase	Illumina [4480015] (imputed)	N
1062	chr1	62610237	62610238	rs11806656	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.3	L1TD1	rs11806656-?	NR	1E-6	(serine)	0.5646209	[0.34-0.79] unit increase	Affymetrix [at least 2500000] (imputed)	N
1062	chr1	62617252	62617253	rs147389517	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1p31.3	INADL	rs147389517-C	0.0116	3E-6		1.5768	NR	Affymetrix, Illumina [30341632] (imputed)	N
1062	chr1	62629318	62629319	rs41300331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs41300331-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1062	chr1	62635080	62635081	rs2666504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs2666504-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1063	chr1	62657116	62657117	rs12120070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs12120070-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1063	chr1	62658646	62658647	rs72679720	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	1p31.3	NR	rs72679720-T	0.139	9E-6	(Males)	0.32944	[0.19-0.47] unit increase	Illumina [~ 6600000] (imputed)	N
1063	chr1	62661791	62661792	rs6656763	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Lip morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals		L1TD1	rs6656763-G	0.36	9E-6	(Right upper lip thickness)	0.017	[NR] unit decrease	Affymetrix [311944]	N
1063	chr1	62673036	62673037	rs7542665	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs7542665-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1063	chr1	62673036	62673037	rs7542665	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	1p31.3	L1TD1	rs7542665-C	0.273	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1063	chr1	62676283	62676284	rs2886644	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	1p31.3	L1TD1	rs2886644-?		6E-14		3.5	[2.5-4.8]	Illumina [NR] (imputed)	N
1063	chr1	62762250	62762251	rs116621133	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	1p31.3	NR	rs116621133-T		8E-6		0.4425	[0.25-0.64] SD units increase	NR [10700000] (imputed)	N
1063	chr1	62762250	62762251	rs116621133	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	1p31.3	NR	rs116621133-T		5E-7		0.4991	[0.3-0.69] SD units increase	NR [10700000] (imputed)	N
1063	chr1	62766600	62766601	rs74076477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,366 Icelandic ancestry individuals	NA	1p31.3		rs74076477-A	0.01229	4E-16		0.673529	[0.51-0.84] unit decrease	Illumina [7506463] (imputed)	N
1063	chr1	62766600	62766601	rs74076477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,364 Icelandic ancestry individuals	NA	1p31.3		rs74076477-A	0.01229	3E-26		0.893591	[0.73-1.06] unit decrease	Illumina [7506463] (imputed)	N
1063	chr1	62782859	62782860	rs79742895	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	1p31.3	KANK4	rs79742895-?	NR	1E-14		2.09	[1.73-2.52]	Illumina [8680745] (imputed)	N
1064	chr1	62803730	62803731	rs17315037	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	1p31.3	INADL, L1TD1, KANK4, USP1, DOCK7, ANGPTL3	rs17315037-T	0.136805	1E-8		0.00793826	[0.0052-0.0107] unit increase	NR [NR] (imputed)	N
1064	chr1	62833423	62833424	rs75978204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs75978204-G	NR	9E-18		0.0461	[0.036-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62833423	62833424	rs75978204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs75978204-G	NR	4E-14		0.0405	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62835935	62835936	rs12145455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs12145455-C	NR	1E-37		0.052	[0.044-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62835935	62835936	rs12145455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs12145455-C	NR	3E-28		0.0447	[0.037-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62835935	62835936	rs12145455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p31.3	NR	rs12145455-C	NR	1E-18		0.0358	[0.028-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62835935	62835936	rs12145455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p31.3	NR	rs12145455-C	NR	1E-13		0.0301	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62836975	62836976	rs6587971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs6587971-T	NR	3E-32		0.0284	[0.024-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62836975	62836976	rs6587971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs6587971-T	NR	2E-28		0.0265	[0.022-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62836975	62836976	rs6587971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p31.3	NR	rs6587971-T	NR	3E-19		0.0215	[0.017-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62836975	62836976	rs6587971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p31.3	NR	rs6587971-T	NR	6E-14		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62836975	62836976	rs6587971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p31.3	NR	rs6587971-T	NR	4E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1064	chr1	62866853	62866854	rs4439380	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.3	DOCK7	rs4439380-?	NR	4E-6	(3-methyladipate; pimelate)	0.20388646	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1064	chr1	62867482	62867483	rs945170	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	1p31.3		rs945170-T	NR	1E-9		0.0137	[0.0096-0.0178] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1064	chr1	62867482	62867483	rs945170	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	1p31.3		rs945170-T	0.26	3E-30		0.012	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1064	chr1	62867482	62867483	rs945170	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	1p31.3		rs945170-T	0.27	5E-12		0.018	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1064	chr1	62900810	62900811	rs624698	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1p31.3		rs624698-A	0.58272	8E-10		0.0243934	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1064	chr1	62900810	62900811	rs624698	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs624698-A	0.582748	1E-15		0.0339801	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62900810	62900811	rs624698	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	1p31.3		rs624698-?	NR	3E-8		0.0051783	[0.0033-0.007] unit increase	NR [NR]	N
1064	chr1	62900811	62900812	rs624700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1p31.3		rs624700-G	0.583363	5E-13		0.0271579	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1064	chr1	62901242	62901243	rs626787	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs626787-G	NR	1E-10		0.0363	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62901806	62901807	rs631106	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs631106-C	NR	1E-10		0.0514	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62901806	62901807	rs631106	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.3	NR	rs631106-?	NR	6E-8	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1064	chr1	62902873	62902874	rs646179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p31.3		rs646179-G	NR	5E-11		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1064	chr1	62902873	62902874	rs646179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p31.3		rs646179-G	NR	2E-21		0.0195	[0.016-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p31.3	USP1	rs646179-G	0.608629	3E-12		0.01580036	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p31.3	USP1	rs646179-G	0.608707	3E-27		0.02453921	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p31.3	USP1	rs646179-G	0.608662	3E-21		0.0212116	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p31.3	USP1	rs646179-G	0.608682	6E-21		0.021335667	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs646179-G	0.572087	8E-19				Affymetrix, Illumina [24332387] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p31.3	NR	rs646179-G	0.605507	2E-16		0.015736	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs646179-G	0.578451	2E-36				Affymetrix, Illumina [24246363] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p31.3	NR	rs646179-G	0.605512	2E-32		0.022284	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs646179-G	0.576732	7E-30				Affymetrix, Illumina [20825802] (imputed)	N
1064	chr1	62902873	62902874	rs646179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p31.3	NR	rs646179-G	0.607016	7E-29		0.022175	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1064	chr1	62902873	62902874	rs646179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p31.3		rs646179-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1064	chr1	62902873	62902874	rs646179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p31.3		rs646179-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1064	chr1	62903358	62903359	rs9436221	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9436221-G	NR	7E-10		0.0788	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62903362	62903363	rs9436222	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9436222-G	NR	7E-10		0.0679	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62903546	62903547	rs9436223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,364 Icelandic ancestry individuals	NA	1p31.3		rs9436223-T	0.3403	3E-25		0.201806	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1064	chr1	62903546	62903547	rs9436223	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9436223-A	NR	7E-10		0.055	[0.038-0.072] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62904294	62904295	rs12029068	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12029068-G	NR	3E-27		0.0597	[0.049-0.07] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62904382	62904382	rs11381740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p31.3	USP1	rs11381740-AT	0.263228	8E-12		0.017815884	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr1	62904574	62904575	rs9436661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9436661-G	NR	7E-10		0.055	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62904574	62904575	rs9436661	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p31.3	USP1	rs9436661-T	0.647081	5E-304		0.0775837	[0.074-0.082] unit increase	Affymetrix [NR] (imputed)	N
1064	chr1	62905892	62905893	rs10493322	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10493322-A	NR	1E-36		0.0869	[0.073-0.1] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62906488	62906489	rs638714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs638714-G	0.654035	1E-14		0.0322008	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906488	62906489	rs638714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p31.3		rs638714-G	0.654075	8E-9		0.0222517	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906488	62906489	rs638714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	1p31.3		rs638714-G	0.654035	9E-20		0.0376253	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906488	62906489	rs638714	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs638714-A	NR	1E-10		0.1193	[0.083-0.156] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62906488	62906489	rs638714	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1p31.3	USP1	rs638714-T	0.347785	1E-13		0.0514954	[0.038-0.065] unit decrease	Affymetrix [9463307] (imputed)	N
1064	chr1	62906536	62906537	rs638305	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs638305-C	NR	1E-10		0.0586	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-20		0.0392908	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-20		0.0392908	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-28		0.0480339	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-28		0.0480339	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	8E-22		0.0406212	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	8E-22		0.0406212	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	4E-16		0.0350116	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	4E-16		0.0350116	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-31		0.0497587	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-31		0.0497587	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	8E-30		0.0483805	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	8E-30		0.0483805	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-16		0.0353506	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-16		0.0353506	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-41		0.0573968	[0.049-0.066] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-41		0.0573968	[0.049-0.066] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-14		0.0322424	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-14		0.0322424	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-19		0.0402361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-19		0.0402361	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-17		0.0359965	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	2E-17		0.0359965	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	3E-26		0.0461995	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	3E-26		0.0461995	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-11		0.0294946	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906682	62906682	rs538997396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p31.3		rs538997396-A,rs538997396-A	0.667272	1E-11		0.0294946	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1064	chr1	62906727	62906728	rs637723	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs637723-G	NR	1E-10		0.0616	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62907594	62907595	rs656297	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs656297-G	NR	1E-10		0.1412	[0.098-0.184] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62908234	62908235	rs642845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs642845-A	NR	1E-10		0.0392	[0.027-0.051] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62908537	62908538	rs641540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs641540-T	NR	1E-10		0.0432	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62911340	62911341	rs598253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs598253-A	NR	4E-11		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1064	chr1	62911750	62911751	rs11207969	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207969-C	NR	6E-31		0.0744	[0.062-0.087] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62911750	62911751	rs11207969	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p31.3		rs11207969-?	NR	7E-23		0.0209396	[0.017-0.025] unit increase	NR [6912294] (imputed)	N
1064	chr1	62912119	62912120	rs659656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs659656-C	NR	2E-10		0.1053	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62912918	62912919	rs10158897	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10158897-C	NR	6E-40		0.1023	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1064	chr1	62912918	62912919	rs10158897	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	USP1	rs10158897-T	0.2	9E-6	(LDL)	0.021	mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
1065	chr1	62914977	62914978	rs783291	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs783291-C	NR	4E-10		0.0345	[0.024-0.045] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62915472	62915473	rs11207970	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207970-G	NR	6E-31		0.0753	[0.063-0.088] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62916795	62916796	rs583609	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs583609-T	0.647492	7E-25		0.0428152	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62916795	62916796	rs583609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs583609-G	NR	4E-11		0.0906	[0.064-0.117] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62916795	62916796	rs583609	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	USP1	rs583609-?	NR	3E-10	(S_VLDL_TG)	0.044224683	NR unit decrease	Illumina [609262]	N
1065	chr1	62917795	62917796	rs597470	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs597470-A	NR	4E-11		0.0589	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62917856	62917857	rs597078	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs597078-C	NR	4E-11		0.0467	[0.033-0.061] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62917864	62917865	rs597076	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs597076-A	NR	4E-11		0.0938	[0.066-0.122] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62918863	62918864	rs630144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs630144-C	NR	1E-10		0.0361	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62920007	62920008	rs636523	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs636523-G	NR	1E-10		0.0711	[0.05-0.093] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62920007	62920008	rs636523	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	DOCK7	rs636523-G	0.2	5E-7	(LDL)	0.021	mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
1065	chr1	62920028	62920029	rs636497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs636497-T	NR	1E-10		0.0808	[0.056-0.105] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62920387	62920388	rs624660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs624660-A	NR	1E-10		0.0496	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62921421	62921422	rs634341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs634341-G	NR	1E-10		0.0525	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62921585	62921586	rs3913007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs3913007-C	NR	9E-12		0.0406	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62921585	62921586	rs3913007	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p31.3	DOCK7	rs3913007-?	NR	3E-20		1.665	[1.31-2.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1065	chr1	62922659	62922660	rs4350231	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4350231-C	NR	1E-11		0.0797	[0.057-0.103] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62922659	62922660	rs4350231	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	1p31.3		rs4350231-A	0.33	2E-8		3.82	[2.49-5.15] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1065	chr1	62922659	62922660	rs4350231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p31.3		rs4350231-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1065	chr1	62923857	62923858	rs12023489	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12023489-C	NR	3E-27		0.0656	[0.054-0.078] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62923862	62923863	rs12037659	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12037659-T	NR	3E-27		0.0885	[0.072-0.105] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62923862	62923863	rs12037659	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p31.3	DOCK7	rs12037659-?	NR	3E-192		0.0809	[0.076-0.086] unit decrease	Affymetrix [5701386] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9988450-G	NR	9E-10		0.0788	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs9988450-?	NR	1E-14		0.03153772	[0.024-0.04] unit decrease	Illumina [31978265] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs9988450-?	NR	1E-12		2.503511	[1.81-3.2] unit decrease	Illumina [32003504] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs9988450-?	NR	2E-6		1.495752	[0.87-2.12] unit decrease	Illumina [31808917] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	NR	1E-49		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	0.675	1E-43	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	0.639	8E-7	(Hispanic)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	NR	6E-43		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	0.675	1E-34	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	0.639	4E-8	(Hispanic)	0.086	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	NR	2E-17		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs9988450-C	0.675	1E-13	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	62924447	62924448	rs9988450	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	1p31.3	ANGPTL3, DOCK7	rs9988450-C	0.68	6E-34		0.077	[0.065-0.089] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1065	chr1	62926056	62926057	rs1305520	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1305520-A	NR	1E-25		0.1421	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62926370	62926371	rs7547965	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7547965-G	NR	3E-10		0.064	[0.044-0.084] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62926370	62926371	rs7547965	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	ANGPTL3	rs7547965-A	0.6584375	1E-19	(ANGPTL3, 10382_1_3)	0.22769761	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1065	chr1	62927796	62927797	rs1167996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1167996-T	NR	1E-28		0.1187	[0.098-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62928548	62928549	rs998403	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs998403-G	NR	9E-10		0.0641	[0.044-0.085] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62929378	62929379	rs11356503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p31.3		rs11356503-T	NR	1E-270		0.0789	[0.075-0.083] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1065	chr1	62929378	62929379	rs11356503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p31.3		rs11356503-T	NR	4E-118		0.0509	[0.047-0.055] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1065	chr1	62929891	62929892	rs1177541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1177541-T	NR	7E-28		0.076	[0.062-0.09] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62930223	62930224	rs11207972	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207972-T	NR	7E-31		0.1957	[0.16-0.23] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62931631	62931632	rs1167998	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1167998-A	NR	1E-28		0.0999	[0.082-0.118] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62931631	62931632	rs1167998	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs1167998-?	NR	4E-17		0.03477044	[0.027-0.043] unit increase	Illumina [31978265] (imputed)	N
1065	chr1	62931631	62931632	rs1167998	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs1167998-?	NR	5E-16		2.884442	[2.19-3.58] unit increase	Illumina [32003504] (imputed)	N
1065	chr1	62931631	62931632	rs1167998	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs1167998-?	NR	9E-8		1.707295	[1.08-2.33] unit increase	Illumina [31808917] (imputed)	N
1065	chr1	62931631	62931632	rs1167998	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs1167998-?	NR	4E-9	(VLDL.small, fasting)	1.505	[NR] unit decrease	Illumina [335603]	N
1065	chr1	62931631	62931632	rs1167998	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	1p31.3	DOCK7	rs1167998-C	0.32	2E-12		0.09	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1065	chr1	62932814	62932815	rs1168000	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	1p31.3	DOCK7	rs1168000-?	NR	5E-6		2.85	[NR]	Affymetrix [up to 10996499] (imputed)	N
1065	chr1	62933757	62933758	rs1168001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168001-C	NR	1E-28		0.119	[0.098-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62934001	62934002	rs12124281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p31.3	DOCK7	rs12124281-A	0.351797	4E-97		0.049079385	[0.044-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1065	chr1	62934307	62934308	rs1168002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168002-C	NR	1E-28		0.1242	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62934845	62934846	rs1168003	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168003-C	NR	1E-28		0.1189	[0.098-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62939465	62939466	rs10889330	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889330-G	NR	2E-32		0.1181	[0.099-0.138] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62940096	62940097	rs1979722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1979722-A	NR	1E-13		0.1059	[0.078-0.134] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62940266	62940266	rs11442941	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p31.3	DOCK7	rs11442941-?		2E-11		0.0454	[0.032-0.059] unit increase	Illumina [31500000] (imputed)	N
1065	chr1	62943006	62943007	rs10889331	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889331-C	NR	2E-32		0.1244	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62943953	62943954	rs1168009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168009-C	NR	1E-28		0.1173	[0.097-0.138] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62943978	62943979	rs1168010	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168010-A	NR	1E-28		0.0695	[0.057-0.082] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62945417	62945418	rs1183260	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1183260-T	NR	1E-27		0.1214	[0.1-0.143] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62945630	62945631	rs6587976	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6587976-G	NR	1E-10		0.0512	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62949033	62949034	rs1305521	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1305521-G	NR	2E-25		0.0786	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62949959	62949960	rs11207974	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207974-G	NR	7E-31		0.0755	[0.063-0.088] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62950857	62950858	rs10889332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889332-T	NR	2E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62950857	62950858	rs10889332	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	1p31.3		rs10889332-T	0.33	3E-14		2.44	[1.81-3.07] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1065	chr1	62950857	62950858	rs10889332	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3	rs10889332-?	0.29	8E-15				Illumina [~ 2000000] (imputed)	N
1065	chr1	62954970	62954971	rs2489835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2489835-G	NR	5E-13		0.0883	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62955861	62955862	rs1690761	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1690761-G	NR	2E-22		0.0521	[0.042-0.062] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62957029	62957030	rs10889333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889333-C	NR	2E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62957029	62957030	rs10889333	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p31.3	DOCK7	rs10889333-?		6E-31		0.0522	[0.043-0.061] unit increase	Illumina [31500000] (imputed)	N
1065	chr1	62957029	62957030	rs10889333	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	1p31.3	DOCK7	rs10889333-A	0.3601	2E-10		0.07188199	[0.05-0.094] mg/dl decrease	Illumina [24111857] (imputed)	N
1065	chr1	62957198	62957199	rs10889334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889334-C	NR	2E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62957757	62957758	rs10789112	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789112-T	NR	3E-34		0.0769	[0.065-0.089] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62957757	62957758	rs10789112	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p31.3	DOCK7	rs10789112-?		7E-56		0.0729	[0.064-0.082] unit decrease	Illumina [31500000] (imputed)	N
1065	chr1	62958657	62958658	rs1183851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p31.3		rs1183851-C	NR	3E-18		0.0178	[0.014-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1065	chr1	62960100	62960101	rs10889335	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889335-G	NR	2E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62960100	62960101	rs10889335	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.3	DOCK7	rs10889335-G	0.356852	1E-12	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.168	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1065	chr1	62960100	62960101	rs10889335	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1p31.3	DOCK7	rs10889335-G	0.356852	1E-12	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.168	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168041-T	0.344623	3E-12		0.0300964	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168041-T	0.344623	1E-10		0.0275658	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs1168041-T	0.34464	1E-17		0.036211	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	1p31.3		rs1168041-C	0.64	9E-8		0.12	[0.081-0.159] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting polyunsaturated fatty acids	4,734 individuals	NA	1p31.3		rs1168041-C	0.644518111	5E-10		0.136877	[0.094-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-6 fatty acids	4,734 individuals	NA	1p31.3		rs1168041-C	0.644638019	5E-10		0.136978	[0.094-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	1p31.3		rs1168041-C	0.644518111	5E-10		0.13714	[0.094-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	62960249	62960250	rs1168041	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3	rs1168041-C	0.72	3E-17	(serum total triglycerides)	0.1	[0.08-0.12] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1065	chr1	62960574	62960575	rs1168040	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168040-G	NR	2E-28		0.1527	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62962733	62962734	rs1168036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168036-G	NR	2E-28		0.0752	[0.062-0.089] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	4E-80		0.0796752	[0.071-0.088] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	3E-106		0.0897256	[0.082-0.098] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-62		0.0701714	[0.062-0.078] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	1E-131		0.102926	[0.095-0.111] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	1E-71		0.0734295	[0.065-0.081] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-64		0.0728806	[0.064-0.081] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-68		0.0740928	[0.066-0.082] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-17		0.0353527	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-34		0.0516096	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	5E-113		0.096121	[0.088-0.104] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	1E-21		0.0397458	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	6E-35		0.0500326	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	5E-74		0.0736931	[0.066-0.082] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	3E-25		0.0433781	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	7E-84		0.0824895	[0.074-0.091] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	6E-118		0.0966459	[0.088-0.105] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	7E-81		0.0813532	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-48		0.0589005	[0.051-0.067] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	1E-90		0.0821824	[0.074-0.09] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	1E-86		0.0794946	[0.072-0.087] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	3E-105		0.0917563	[0.084-0.1] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	9E-103		0.0914582	[0.083-0.1] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355261	2E-95		0.087773	[0.079-0.096] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	2E-50		0.0630859	[0.055-0.071] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	1E-30		0.0496256	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	3E-29		0.0454523	[0.038-0.053] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	3E-27		0.0449101	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1p31.3		rs1002687-G	0.355237	7E-14		0.0312199	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963736	62963737	rs1002687	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1002687-G	NR	8E-41		0.0649	[0.055-0.075] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	9E-75		0.0764889	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	5E-48		0.0612509	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	5E-41		0.056629	[0.048-0.065] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	8E-48		0.0612796	[0.053-0.07] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	5E-57		0.0671442	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168034-G	0.355331	3E-39		0.0562549	[0.048-0.065] unit increase	NR [11722792] (imputed)	N
1065	chr1	62963913	62963914	rs1168034	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168034-C	NR	2E-28		0.1532	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	6E-37		0.0513213	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	3E-23		0.0388816	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	7E-33		0.0469565	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	4E-24		0.0401396	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	3E-31		0.0465994	[0.039-0.054] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	3E-12		0.0304606	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	1E-10		0.0259893	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	4E-13		0.029035	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p31.3		rs58336065-G	0.369664	2E-31		0.0464866	[0.039-0.054] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62964310	62964310	rs58336065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p31.3	NR	rs58336065-I	0.629086	3E-20		0.019108	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1065	chr1	62965620	62965621	rs35529421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	1p31.3		rs35529421-A	0.142379	1E-34		0.0702106	[0.059-0.081] unit decrease	Illumina [13471903] (imputed)	N
1065	chr1	62965620	62965621	rs35529421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1p31.3		rs35529421-A	0.142128	1E-11		0.0347387	[0.025-0.045] unit decrease	Illumina [13476599] (imputed)	N
1065	chr1	62965620	62965621	rs35529421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs35529421-G	NR	2E-12		0.0418	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62965620	62965621	rs35529421	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	1p31.3	DOCK7	rs35529421-?	NR	4E-32		0.07475	[0.062-0.087] unit decrease novel	Illumina [6108953] (imputed)	N
1065	chr1	62967746	62967747	rs1168032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs1168032-A	0.35507	1E-32		0.0492897	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1065	chr1	62967746	62967747	rs1168032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168032-A	0.355046	2E-102		0.0925914	[0.084-0.101] unit increase	NR [11722792] (imputed)	N
1065	chr1	62967746	62967747	rs1168032	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs1168032-A	0.355046	9E-122		0.101099	[0.093-0.11] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62967746	62967747	rs1168032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168032-G	NR	2E-28		0.0685	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62967986	62967987	rs1168031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168031-C	NR	2E-28		0.0634	[0.052-0.075] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62968433	62968433	rs5774606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs5774606-A	0.645962	1E-20		0.0401749	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1065	chr1	62968490	62968491	rs1168030	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168030-A	NR	2E-28		0.0741	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62969401	62969402	rs1168029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs1168029-G	0.355136	7E-84		0.0818595	[0.074-0.09] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62969401	62969402	rs1168029	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p31.3		rs1168029-G	0.354912	1E-16		0.0357825	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62969401	62969402	rs1168029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168029-T	NR	2E-28		0.1228	[0.1-0.14] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62969401	62969402	rs1168029	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	1p31.3	ANGPTL3	rs1168029-?	NR	3E-13	(MobCH)	0.13	[0.091-0.169] unit increase	Illumina [~ 7700000] (imputed)	N
1065	chr1	62969430	62969431	rs1168028	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168028-G	NR	2E-28		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62970183	62970184	rs1168027	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168027-C	NR	2E-28		0.0975	[0.08-0.115] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62970995	62970996	rs1168026	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168026-C	NR	2E-28		0.1532	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62972227	62972228	rs7527004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7527004-A	NR	3E-10		0.0386	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62973794	62973795	rs1184865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1184865-T	NR	1E-27		0.0695	[0.057-0.082] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62974149	62974150	rs1168042	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168042-G	NR	2E-28		0.1829	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62976750	62976751	rs11207976	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207976-G	NR	7E-31		0.1526	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62977306	62977307	rs11207977	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207977-G	NR	8E-31		0.0963	[0.08-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62977418	62977419	rs1781212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1781212-A	NR	6E-14		0.0693	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62977557	62977558	rs1168044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168044-A	NR	2E-28		0.0741	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62980606	62980607	rs10889337	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889337-C	NR	2E-32		0.1381	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62980606	62980607	rs10889337	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10889337-?	NR	6E-12	(HDL_TG)	0.05854394	NR unit decrease	Illumina [609262]	N
1065	chr1	62980606	62980607	rs10889337	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10889337-?	NR	1E-10	(HDL_TG)	0.0814759	NR unit decrease	Illumina [609262]	N
1065	chr1	62981439	62981440	rs12090886	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12090886-G	NR	4E-27		0.0932	[0.076-0.11] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62982890	62982891	rs1168045	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168045-T	NR	2E-28		0.1531	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62982993	62982994	rs11207979	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207979-A	NR	8E-31		0.136	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62983692	62983693	rs1168046	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168046-C	NR	2E-28		0.0788	[0.065-0.093] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62983750	62983751	rs1168047	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168047-G	NR	2E-28		0.0756	[0.062-0.089] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62984896	62984897	rs10889338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889338-A	NR	2E-32		0.124	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62984896	62984897	rs10889338	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p31.3	DOCK7	rs10889338-T	0.351107	3E-37		0.074726135	[0.063-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
1065	chr1	62986954	62986955	rs1168050	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168050-A	NR	2E-28		0.0931	[0.077-0.11] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62987288	62987289	rs1690766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1690766-C	NR	2E-22		0.1233	[0.099-0.148] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62988971	62988972	rs1781195	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1781195-C	NR	6E-14		0.0777	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62989806	62989807	rs1627591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1627591-C	NR	1E-22		0.0657	[0.053-0.079] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62991368	62991369	rs11577840	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11577840-C	NR	1E-29		0.0709	[0.059-0.083] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62991904	62991905	rs12062275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12062275-A	NR	4E-27		0.1264	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62992748	62992749	rs11207980	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207980-A	NR	9E-31		0.0941	[0.078-0.11] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62993067	62993068	rs4915838	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4915838-A	NR	2E-11		0.0557	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62993402	62993403	rs61775910	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs61775910-C	NR	7E-11		0.0828	[0.058-0.108] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62993402	62993403	rs61775910	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	1p31.3	DOCK7	rs61775910-?	NR	4E-10		0.03518	[0.024-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1065	chr1	62993619	62993620	rs12403207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12403207-C	NR	5E-27		0.105	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62996045	62996046	rs1168015	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p31.3		rs1168015-C	0.35241	7E-60		0.0662447	[0.058-0.074] unit decrease	NR [11722792] (imputed)	N
1065	chr1	62996045	62996046	rs1168015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168015-C	NR	1E-28		0.0769	[0.063-0.09] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	62996837	62996838	rs1168013	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs1168013-?	NR	7E-18		0.03552932	[0.027-0.044] unit increase	Illumina [31978265] (imputed)	N
1065	chr1	62996837	62996838	rs1168013	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs1168013-?	NR	1E-15		2.835388	[2.14-3.53] unit increase	Illumina [32003504] (imputed)	N
1065	chr1	62996837	62996838	rs1168013	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs1168013-?	NR	5E-7		1.605552	[0.98-2.23] unit increase	Illumina [31808917] (imputed)	N
1065	chr1	62996837	62996838	rs1168013	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p31.3	DOCK7, ANGPTL3	rs1168013-G	0.65	6E-8		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1065	chr1	62999594	62999595	rs4915840	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4915840-T	NR	2E-11		0.0464	[0.033-0.06] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	62999674	62999675	rs7534572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7534572-G	NR	3E-10		0.0343	[0.024-0.045] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63001119	63001120	rs1168018	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168018-C	NR	2E-28		0.1451	[0.12-0.17] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63002550	63002551	rs1168017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168017-T	NR	1E-28		0.1252	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63005949	63005950	rs7548877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7548877-C	NR	3E-10		0.0631	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63006086	63006087	rs11207981	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207981-T	NR	9E-31		0.0939	[0.078-0.11] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63006594	63006595	rs1168023	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168023-C	NR	2E-28		0.1532	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	4E-74		0.0778022	[0.069-0.086] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	4E-74		0.0778022	[0.069-0.086] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	1E-39		0.0566365	[0.048-0.065] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	1E-39		0.0566365	[0.048-0.065] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357738	4E-40		0.055668	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357738	4E-40		0.055668	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	1E-56		0.0673955	[0.059-0.076] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	1E-56		0.0673955	[0.059-0.076] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	7E-79		0.0802496	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	7E-79		0.0802496	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357741	3E-66		0.0714004	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357741	3E-66		0.0714004	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-46		0.0609195	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-46		0.0609195	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	3E-73		0.0770318	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	3E-73		0.0770318	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-70		0.0762037	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-70		0.0762037	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	4E-72		0.0767529	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	4E-72		0.0767529	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-31		0.0489999	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	2E-31		0.0489999	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	5E-73		0.0764389	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006803	63006803	rs765974791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC,rs765974791-TGATTTCAGCTTTATAGAGGCTGAAGAC	0.357721	5E-73		0.0764389	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63006841	63006842	rs1781221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p31.3		rs1781221-A	0.396715	4E-12		0.0262134	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63007181	63007182	rs11207982	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207982-G	NR	9E-31		0.0751	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63007227	63007228	rs1184547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1184547-T	NR	1E-27		0.0739	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63007720	63007721	rs1168022	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168022-G	NR	2E-28		0.0729	[0.06-0.086] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63009899	63009900	rs1168021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168021-A	NR	2E-28		0.1453	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63009955	63009956	rs1168020	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168020-C	NR	2E-28		0.0692	[0.057-0.081] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63010109	63010110	rs1179765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1179765-G	NR	8E-28		0.0741	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63010870	63010871	rs12074528	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12074528-C	NR	4E-27		0.1228	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63010870	63010871	rs12074528	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p31.3	DOCK7	rs12074528-T	0.352615	1E-95		0.0425351	[0.039-0.047] unit decrease	Affymetrix [NR] (imputed)	N
1065	chr1	63012055	63012056	rs10889339	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889339-A	NR	2E-32		0.0891	[0.074-0.104] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63012070	63012071	rs10889340	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889340-C	NR	2E-32		0.0975	[0.081-0.114] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63012106	63012107	rs11207983	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207983-A	NR	9E-31		0.0845	[0.07-0.099] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63013133	63013134	rs2029763	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2029763-T	NR	1E-13		0.0825	[0.061-0.104] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63013395	63013396	rs11207984	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207984-C	NR	9E-31		0.075	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63013785	63013786	rs11207985	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207985-G	NR	1E-30		0.0753	[0.063-0.088] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63015198	63015199	rs10789113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789113-T	NR	3E-34		0.0918	[0.077-0.107] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63018169	63018170	rs11207986	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207986-C	NR	1E-30		0.0938	[0.078-0.11] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63018701	63018703	rs371562288	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs371562288-CT	0.371005	1E-8		0.0246373	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1065	chr1	63019918	63019919	rs7519785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7519785-C	NR	3E-10		0.0632	[0.044-0.083] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63020815	63020816	rs10159255	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10159255-T	NR	6E-40		0.1019	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63020815	63020816	rs10159255	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10159255-?	NR	3E-14	(M_HDL_TG)	0.06582452	NR unit decrease	Illumina [609262]	N
1065	chr1	63020815	63020816	rs10159255	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10159255-?	NR	1E-10	(S_VLDL_C)	0.049144384	NR unit decrease	Illumina [609262]	N
1065	chr1	63020815	63020816	rs10159255	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10159255-?	NR	4E-12	(M_HDL_TG)	0.08730457	NR unit decrease	Illumina [609262]	N
1065	chr1	63020815	63020816	rs10159255	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs10159255-?	NR	2E-6	(S_VLDL_C)	0.06987169	NR unit decrease	Illumina [609262]	N
1065	chr1	63025941	63025942	rs2131925	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1p31.3		rs2131925-G	0.354329	8E-41		0.0535621	[0.046-0.061] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1p31.3		rs2131925-G	0.356375	6E-27		0.022	[0.018-0.026] unit increase	NR [7250403] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.356195	2E-12		0.0146684	[0.011-0.019] unit decrease	NR [NR]	N
1065	chr1	63025941	63025942	rs2131925	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs2131925-?	NR	4E-18		0.03594463	[0.028-0.044] unit increase	Illumina [31978265] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs2131925-?	NR	1E-15		2.843705	[2.15-3.54] unit increase	Illumina [32003504] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs2131925-?	NR	3E-7		1.633785	[1.01-2.26] unit increase	Illumina [31808917] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	1p31.3		rs2131925-T	0.5874	7E-22		0.0224	[0.018-0.027] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p31.3		rs2131925-T	0.6196	2E-18		1.4311	[1.11-1.75] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	NR	3E-51		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.371	3E-6	(Hispanic)	0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.328	5E-44	(EA)	0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	NR	4E-43		0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.371	9E-8	(Hispanic)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.328	7E-35	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	NR	1E-17		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs2131925-G	0.328	9E-14	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	1p31.3	ANGPTL3	rs2131925-T	0.759	7E-10		0.091	[0.062-0.12] unit increase	Illumina [286795]	N
1065	chr1	63025941	63025942	rs2131925	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	ANGPTL3	rs2131925-G	0.34	3E-74		0.066	[NR] mg/dL decrease	NR [NR] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	ANGPTL3	rs2131925-G	0.34	3E-32		0.049	[NR] unit decrease	NR [NR] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p31.3	ANGPTL3	rs2131925-G	0.34	4E-80		0.075	[NR] unit decrease	NR [NR] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3	rs2131925-G	0.32	9E-43		4.94	[4.16-5.72] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3	rs2131925-G	0.32	3E-18		1.59	[1.22-1.96] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1065	chr1	63025941	63025942	rs2131925	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3	rs2131925-G	0.32	5E-41		2.6	[2.21-2.99] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1065	chr1	63026010	63026011	rs2131926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2131926-G	NR	3E-13		0.0404	[0.03-0.051] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63026428	63026429	rs10889343	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889343-T	NR	3E-32		0.0982	[0.082-0.114] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63027023	63027024	rs4329540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4329540-C	NR	1E-11		0.0407	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63029432	63029433	rs4915621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4915621-G	NR	2E-11		0.1467	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63031615	63031616	rs6693353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6693353-G	NR	2E-10		0.039	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63033940	63033941	rs10889344	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889344-C	NR	3E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs10789114-T	0.650167	5E-25		0.0425357	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs10789114-T	0.650167	7E-36		0.0539125	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p31.3		rs10789114-T	0.650167	1E-70		0.0766004	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p31.3		rs10789114-C	0.3	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p31.3	NR	rs10789114-C	0.3535	4E-8				NR [9056863] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789114-A	NR	3E-34		0.0917	[0.077-0.106] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63034221	63034222	rs10789114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p31.3	DOCK7	rs10789114-C	0.351053	2E-18		0.020531734	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1065	chr1	63034362	63034363	rs7555577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-6 fatty acids	4,348 individuals	NA	1p31.3		rs7555577-C	0.644016566	5E-9		0.133894	[0.089-0.179] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	63034362	63034363	rs7555577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	1p31.3		rs7555577-C	0.64475803	8E-9		0.125188	[0.083-0.168] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	63034362	63034363	rs7555577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	1p31.3		rs7555577-C	0.64475803	4E-8		0.119419	[0.077-0.162] mmol/l increase	Illumina [7701709] (imputed)	N
1065	chr1	63034362	63034363	rs7555577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7555577-G	NR	3E-10		0.064	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63037836	63037837	rs12116574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12116574-A	NR	4E-27		0.0681	[0.056-0.08] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63039532	63039533	rs6696502	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6696502-A	NR	2E-10		0.0364	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63040727	63040728	rs12038768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12038768-T	NR	3E-27		0.1051	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63041085	63041086	rs11207990	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207990-C	NR	1E-30		0.0998	[0.083-0.117] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63041799	63041800	rs11207992	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207992-C	NR	1E-30		0.0914	[0.076-0.107] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63041799	63041800	rs11207992	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	1p31.3	DOCK7	rs11207992-?	NR	2E-46		0.02969	[0.025-0.034] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1065	chr1	63042125	63042126	rs1472257	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1472257-A	NR	4E-24		0.0558	[0.045-0.067] unit increase	Illumina [6720657] (imputed)	N
1065	chr1	63042737	63042738	rs10789116	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789116-A	NR	3E-34		0.1246	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1065	chr1	63045505	63045506	rs1748201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1748201-A	NR	6E-14		0.0874	[0.065-0.11] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63046038	63046039	rs1748200	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1748200-G	NR	6E-14		0.1591	[0.12-0.2] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63046577	63046578	rs1629122	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1629122-G	NR	1E-22		0.0596	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649032	2E-31		0.0483135	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649032	7E-41		0.0554569	[0.047-0.064] unit increase	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	7E-17		0.0348633	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	1E-31		0.047338	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	2E-52		0.0626943	[0.055-0.071] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	2E-27		0.0440656	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	2E-46		0.0582023	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63047986	63047987	rs11207994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p31.3		rs11207994-C	0.649057	5E-9		0.0228807	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63048044	63048045	rs2934744	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs2934744-A	0.647105	1E-97		0.0890245	[0.081-0.097] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63048044	63048045	rs2934744	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p31.3	NR	rs2934744-A	0.643546	4E-26		0.022405	[0.018-0.027] unit decrease	Affymetrix [16668957] (imputed)	N
1066	chr1	63048276	63048277	rs35194512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p31.3		rs35194512-A	0.651356	5E-13		0.0314525	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1066	chr1	63048276	63048277	rs35194512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p31.3		rs35194512-A	0.650414	3E-16		0.0329695	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207995-C	NR	1E-30		0.0749	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p31.3	DOCK7	rs11207995-?		2E-6	(African American)	0.11571218	[0.068-0.163] unit decrease	Illumina [13620258] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs11207995-?	NR	1E-23		0.04226465	[0.034-0.051] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs11207995-?	NR	5E-20		3.329604	[2.62-4.04] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs11207995-?	NR	1E-9		1.977345	[1.34-2.62] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	NR	1E-49		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	0.674	3E-41	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	0.655	2E-6	(Hispanic)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	NR	2E-42		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	0.674	2E-33	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	0.655	5E-8	(Hispanic)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	NR	8E-17		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs11207995-A	0.674	4E-13	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1p31.3	ANGPTL3, DOCK7	rs11207995-A	0.67	2E-34		0.076	[0.064-0.088] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1066	chr1	63049550	63049551	rs11207995	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1p31.3	DOCK7	rs11207995-C	0.22	6E-10	(TC)	0.012	[0.00024-0.02376] mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p31.3		rs1748195-C	0.647054	3E-27		0.0464498	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1748195-G	NR	6E-14		0.1312	[0.097-0.165] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	6E-11	(PC)	0.04955617	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	5E-14	(TotPG)	0.061078165	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	5E-11	(M_HDL_P)	0.06356618	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	3E-12	(TotFA)	0.05366202	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	4E-11	(TotPG)	0.0804561	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	2E-6	(M_HDL_P)	0.059096094	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	2E-10	(TotFA)	0.079092935	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748195-?	NR	1E-9	(PC)	0.07383917	NR unit decrease	Illumina [609262]	N
1066	chr1	63049592	63049593	rs1748195	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs1748195-?	NR	3E-18		0.03599904	[0.028-0.044] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs1748195-?	NR	2E-15		2.834616	[2.14-3.53] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs1748195-?	NR	4E-7		1.626061	[1-2.25] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	NR	1E-50		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	0.672	2E-44	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	NR	3E-43		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	0.672	3E-35	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	0.629	2E-7	(Hispanic)	0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	NR	8E-18		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs1748195-C	0.672	6E-14	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1p31.3	ANGPTL3, AL138847.1, DOCK7, USP1	rs1748195-?		4E-6				Illumina [9560910] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.3	USP1	rs1748195-G	0.3299	7E-8	(EA)	1.0702562	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1066	chr1	63049592	63049593	rs1748195	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	1p31.3	ANGPTL3	rs1748195-C	0.70	2E-10		7.12	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12042319-T	NR	3E-27		0.0931	[0.076-0.11] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs12042319-?	NR	2E-22		0.04063069	[0.032-0.049] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs12042319-?	NR	1E-18		3.17552	[2.47-3.88] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs12042319-?	NR	5E-9		1.88568	[1.25-2.52] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	1p31.3	ANGPTL3	rs12042319-G	0.81	8E-12		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1066	chr1	63049818	63049819	rs12042319	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	1p31.3	ANGPTL3	rs12042319-G	0.81	5E-8		2.229	[1.44-3.02] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs3850634-T	NR	8E-12		0.0927	[0.066-0.119] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs3850634-?	NR	3E-23		0.04188947	[0.034-0.05] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs3850634-?	NR	2E-20		3.366296	[2.65-4.08] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs3850634-?	NR	5E-10		2.026313	[1.39-2.67] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	NR	1E-51		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	0.674	8E-43	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	0.656	7E-7	(Hispanic)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	NR	6E-44		0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	0.674	3E-34	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	0.656	4E-9	(Hispanic)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	NR	2E-17		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63050597	63050598	rs3850634	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs3850634-T	0.674	2E-13	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63055469	63055470	rs11207996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207996-G	NR	1E-30		0.1058	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63056111	63056112	rs1748197	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1748197-A	NR	6E-14		0.0538	[0.04-0.068] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	8E-11	(Serum_TG)	0.065698005	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	6E-12	(FAw6)	0.060612284	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	6E-11	(M_VLDL_L)	0.04922212	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	5E-11	(M_HDL_PL)	0.06205501	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	4E-11	(MUFA)	0.06479189	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	2E-12	(TotCho)	0.05197832	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	2E-11	(S_VLDL_P)	0.065621346	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	1E-9	(XXL_VLDL_CE)	0.07014078	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	1E-9	(M_VLDL_C)	0.072421595	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	6E-6	(M_VLDL_L)	0.06694474	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	4E-9	(FAw6)	0.07124489	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	3E-7	(S_VLDL_P)	0.06483099	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	2E-7	(TotCho)	0.06344866	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	2E-7	(Serum_TG)	0.06580296	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	1E-8	(MUFA)	0.07167646	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	1E-6	(M_VLDL_C)	0.07247249	NR unit decrease	Illumina [609262]	N
1066	chr1	63056111	63056112	rs1748197	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1748197-?	NR	1E-6	(M_HDL_PL)	0.061714787	NR unit decrease	Illumina [609262]	N
1066	chr1	63056669	63056670	rs2366636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2366636-T	NR	5E-13		0.0648	[0.047-0.082] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63057135	63057136	rs1748199	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1748199-T	NR	6E-14		0.0612	[0.045-0.077] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	8E-53		0.0625948	[0.055-0.071] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-67		0.0715843	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	1E-89		0.0836796	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	5E-142		0.107465	[0.099-0.116] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	3E-68		0.0724591	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	4E-64		0.0704336	[0.062-0.079] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	1E-82		0.0798378	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	7E-90		0.08371	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-72		0.0746659	[0.067-0.083] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	6E-73		0.075277	[0.067-0.083] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	6E-73		0.0750931	[0.067-0.083] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-73		0.0754019	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	5E-73		0.0752033	[0.067-0.083] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-78		0.0775475	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	5E-75		0.0754242	[0.067-0.083] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-76		0.0773121	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	3E-70		0.0739371	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	3E-86		0.0817947	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	1E-71		0.0741524	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	1E-73		0.0755562	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	7E-77		0.076947	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-76		0.0771682	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	4E-86		0.0819897	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	2E-55		0.0643908	[0.056-0.072] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	4E-73		0.0762396	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	1E-87		0.082522	[0.074-0.091] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060037	63060037	rs79439217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs79439217-T	0.647263	3E-56		0.0636418	[0.056-0.072] unit increase	NR [11722792] (imputed)	N
1066	chr1	63060310	63060311	rs6690733	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6690733-C	NR	2E-10		0.0543	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63061905	63061906	rs11207997	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,366 Icelandic ancestry individuals	NA	1p31.3		rs11207997-T	0.3396	5E-27		0.205464	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
1066	chr1	63061905	63061906	rs11207997	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207997-A	NR	1E-30		0.1361	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63063286	63063287	rs758931786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	1p31.3		rs758931786-?	NR	3E-9		0.854264	[0.58-1.12] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063464	63063465	rs149086653	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	1p31.3		rs149086653-?	NR	6E-12		0.14482	[0.1-0.19] unit increase	NR [9800000] (imputed)	N
1066	chr1	63063599	63063604	rs398122988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	1p31.3		rs398122988-?	NR	2E-62		0.67485	[0.59-0.76] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063599	63063604	rs398122988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p31.3		rs398122988-?	NR	7E-35		0.515014	[0.43-0.6] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063599	63063604	rs398122988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	1p31.3		rs398122988-?	NR	4E-16		0.321092	[0.24-0.4] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063599	63063604	rs398122988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p31.3		rs398122988-?	NR	2E-18		0.358847	[0.27-0.44] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063599	63063604	rs398122988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	1p31.3		rs398122988-?	NR	5E-42		0.558815	[0.47-0.64] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063675	63063679	rs398122987	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	1p31.3		rs398122987-?	NR	2E-17		0.518583	[0.39-0.65] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063675	63063679	rs398122987	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p31.3		rs398122987-?	NR	4E-13		0.517441	[0.38-0.66] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063675	63063679	rs398122987	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	1p31.3		rs398122987-?	NR	2E-10		0.413188	[0.28-0.55] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63063675	63063679	rs398122987	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	1p31.3		rs398122987-?	NR	1E-20		0.625901	[0.49-0.77] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63067474	63067475	rs141967457	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	1p31.3		rs141967457-?	NR	1E-11		0.474163	[0.34-0.61] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63069705	63069706	rs200065546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	1p31.3		rs200065546-?	NR	4E-41		0.671411	[0.57-0.77] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63069705	63069706	rs200065546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	1p31.3		rs200065546-?	NR	2E-27		0.568224	[0.46-0.67] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63069705	63069706	rs200065546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	1p31.3		rs200065546-?	NR	2E-16		0.442095	[0.34-0.54] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63069705	63069706	rs200065546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	1p31.3		rs200065546-?	NR	9E-15		0.399222	[0.29-0.5] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63069705	63069706	rs200065546	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	1p31.3		rs200065546-?	NR	7E-40		0.702266	[0.6-0.81] unit decrease	NR [9800000] (imputed)	N
1066	chr1	63072264	63072265	rs10789117	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789117-C	NR	3E-34		0.0771	[0.065-0.089] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63073974	63073975	rs6675401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6675401-A	NR	2E-10		0.0479	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63074441	63074442	rs6678483	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6678483-C	NR	2E-10		0.0391	[0.027-0.051] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63075825	63075826	rs10889347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889347-G	NR	3E-32		0.1345	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889348-C	NR	4E-32		0.0936	[0.078-0.109] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs10889348-?	NR	6E-22		0.04100905	[0.033-0.049] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs10889348-?	NR	9E-16		2.953555	[2.23-3.67] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs10889348-?	NR	4E-7		1.670155	[1.02-2.32] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	NR	8E-51		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	0.673	2E-43	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	0.66	7E-7	(Hispanic)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	NR	2E-43		0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	0.673	7E-34	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	0.66	2E-9	(Hispanic)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	NR	2E-17		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs10889348-A	0.673	4E-13	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63078221	63078222	rs10889348	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p31.3	ANGPTL3, DOCK7	rs10889348-A	0.67	2E-11		0.043	[0.031-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1066	chr1	63081918	63081919	rs10889349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889349-T	NR	4E-32		0.1235	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63084029	63084030	rs61471917	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs61471917-A	NR	7E-11		0.0325	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63085265	63085266	rs10889350	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889350-T	NR	4E-32		0.1366	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	4E-62		0.0728665	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	3E-69		0.0766176	[0.068-0.085] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	8E-53		0.066895	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	9E-56		0.0689291	[0.06-0.078] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	3E-19		0.0389781	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	9E-41		0.0574569	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	3E-71		0.077638	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	1E-55		0.0687692	[0.06-0.077] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239736-T	0.658766	8E-67		0.0745966	[0.066-0.083] unit increase	NR [11722792] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	1p31.3		rs12239736-A	0.355115026	1E-8		0.131642	[0.087-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total phosphoglycerides	4,734 individuals	NA	1p31.3		rs12239736-A	0.353805714	4E-8		0.12016	[0.077-0.163] mmol/l decrease	Illumina [7701709] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12239736-G	NR	4E-27		0.1072	[0.088-0.127] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63085996	63085997	rs12239736	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	1p31.3	NR	rs12239736-A	0.352174	4E-10		0.07167609	[0.049-0.094] mg/dl decrease	Illumina [24111857] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-13		0.0328882	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	4E-19		0.0397599	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	5E-13		0.0318093	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	5E-15		0.0346478	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	6E-25		0.045542	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-14		0.0342207	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-10		0.0284875	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-10		0.0285531	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-13		0.0322424	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-35		0.055197	[0.047-0.064] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-43		0.0614676	[0.053-0.07] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	4E-23		0.0439052	[0.035-0.053] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-22		0.0432172	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-16		0.0365451	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-19		0.0402488	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	7E-16		0.0354506	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-8		0.0244904	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	2E-62		0.0736457	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	2E-20		0.0411496	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-42		0.0604917	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	8E-27		0.0476187	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-11		0.0291867	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-25		0.0464616	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	2E-14		0.0337072	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-53		0.0680734	[0.059-0.077] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	6E-19		0.0393749	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	4E-11		0.0294968	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-40		0.059161	[0.05-0.068] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	3E-14		0.0337062	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-23		0.0443639	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	1E-17		0.0380738	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	6E-11		0.0287461	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1p31.3		rs12239737-T	0.665002	4E-24		0.0449325	[0.036-0.054] unit increase	NR [11722792] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p31.3		rs12239737-A	NR	2E-58		0.0407	[0.036-0.046] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1066	chr1	63086000	63086001	rs12239737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p31.3	DOCK7	rs12239737-T	0.664725	3E-43		0.0307165	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6587980-G	NR	1E-10		0.0891	[0.062-0.116] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs6587980-?	NR	2E-14		0.03148979	[0.023-0.04] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs6587980-?	NR	8E-13		2.532176	[1.84-3.23] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs6587980-?	NR	4E-6		1.472081	[0.85-2.09] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	NR	1E-50		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	0.673	2E-43	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	0.634	2E-6	(Hispanic)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	NR	7E-44		0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	0.673	4E-35	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	0.634	3E-8	(Hispanic)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	NR	5E-18		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63090857	63090858	rs6587980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs6587980-C	0.673	7E-14	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63092119	63092120	rs7419069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs7419069-C	NR	4E-11		0.0327	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1066	chr1	63092119	63092120	rs7419069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs7419069-C	NR	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1066	chr1	63093616	63093617	rs10157265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10157265-C	NR	6E-40		0.1017	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63094206	63094207	rs11485618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11485618-C	NR	8E-30		0.0921	[0.076-0.108] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63094206	63094207	rs11485618	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p31.3	ANGPTL3	rs11485618-A	0.691	1E-31	(Trans-ethnic initial)	0.05	[0.042-0.058] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1066	chr1	63094691	63094692	rs10789118	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789118-C	NR	3E-34		0.0917	[0.077-0.106] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63095710	63095711	rs7520810	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7520810-T	NR	3E-10		0.0561	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63096780	63096781	rs12025800	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12025800-C	NR	3E-27		0.1222	[0.1-0.14] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63097424	63097424	rs141409973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p31.3		rs141409973-A	0.647612	3E-75		0.0758094	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
1066	chr1	63097424	63097424	rs141409973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs141409973-A	0.647612	4E-83		0.0812119	[0.073-0.089] unit increase	NR [11722792] (imputed)	N
1066	chr1	63097424	63097424	rs141409973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs141409973-A	0.647612	1E-93		0.085542	[0.077-0.094] unit increase	NR [11722792] (imputed)	N
1066	chr1	63097424	63097424	rs141409973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	1p31.3		rs141409973-A	0.647612	5E-84		0.0813675	[0.073-0.09] unit increase	NR [11722792] (imputed)	N
1066	chr1	63098234	63098235	rs10789119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789119-T	NR	4E-34		0.0905	[0.076-0.105] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63098640	63098641	rs11207999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11207999-A	NR	1E-30		0.1717	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63099022	63099023	rs10889352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889352-T	NR	4E-32		0.0891	[0.074-0.104] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63099576	63099577	rs2366638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2366638-G	NR	5E-13		0.0839	[0.061-0.107] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63100044	63100045	rs777231403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs777231403-G	0.650021	9E-57		0.0664122	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1066	chr1	63100044	63100045	rs777231403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs777231403-G	0.650021	6E-89		0.0847647	[0.076-0.093] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63100044	63100045	rs777231403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p31.3		rs777231403-G	0.650033	8E-39		0.0537764	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63101122	63101123	rs10789120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10789120-G	NR	4E-34		0.1293	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63101206	63101206	rs113073170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p31.3		rs113073170-CA	NR	2E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1066	chr1	63103216	63103217	rs1570694	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1570694-C	NR	1E-22		0.092	[0.074-0.11] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63103216	63103217	rs1570694	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs1570694-?	NR	2E-10	(XL_VLDL_P)	0.04646265	NR unit decrease	Illumina [609262]	N
1066	chr1	63105252	63105253	rs6657050	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6657050-A	NR	2E-10		0.0699	[0.048-0.091] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12047226-C	NR	4E-27		0.1101	[0.09-0.13] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	NR	6E-52		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	0.678	2E-43	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	0.66	9E-7	(Hispanic)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	NR	3E-45		0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	0.678	2E-35	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	0.66	6E-9	(Hispanic)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	NR	3E-18		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63105537	63105538	rs12047226	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p31.3	NR	rs12047226-T	0.678	5E-14	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1066	chr1	63106766	63106767	rs7539035	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7539035-G	NR	3E-10		0.0478	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63107525	63107526	rs995000	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs995000-C	NR	8E-10		0.0733	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63107525	63107526	rs995000	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p31.3	DOCK7	rs995000-T	0.3454	6E-112		0.0618	[0.056-0.067] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1066	chr1	63107525	63107526	rs995000	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p31.3	DOCK7	rs995000-T	0.3452	6E-22		0.0265	[0.021-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1066	chr1	63107525	63107526	rs995000	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	1p31.3	ANGPTL3	rs995000-T	0.309	3E-92	(Trans-ethnic initial)	0.0691	[0.062-0.076] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1066	chr1	63107525	63107526	rs995000	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	1p31.3	ANGPTL3	rs995000-T	0.188	1E-13	(Asian initial, BMI unadjusted)	0.0808	[0.059-0.102] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1066	chr1	63107525	63107526	rs995000	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	1p31.3	ANGPTL3	rs995000-T	0.18	2E-10	(BMI unadjusted)	0.085	[0.06-0.11] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1066	chr1	63108373	63108374	rs11208000	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11208000-A	NR	1E-30		0.0944	[0.078-0.11] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63111068	63111069	rs993013	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs993013-C	NR	8E-10		0.0329	[0.022-0.043] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63112319	63112320	rs1168085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168085-C	NR	2E-28		0.1204	[0.099-0.142] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63112388	63112389	rs1168086	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168086-G	NR	2E-28		0.0849	[0.07-0.1] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63113510	63113511	rs746735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs746735-A	NR	3E-10		0.044	[0.03-0.058] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63113718	63113719	rs1168089	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168089-T	NR	3E-28		0.0755	[0.062-0.089] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63116226	63116227	rs1168093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168093-C	NR	3E-28		0.0755	[0.062-0.089] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63118195	63118196	rs10889353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889353-G	NR	4E-32		0.1012	[0.084-0.118] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63118195	63118196	rs10889353	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs10889353-?	NR	5E-24		0.04258073	[0.034-0.051] unit decrease	Illumina [31978265] (imputed)	N
1066	chr1	63118195	63118196	rs10889353	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs10889353-?	NR	2E-20		3.362787	[2.65-4.08] unit decrease	Illumina [32003504] (imputed)	N
1066	chr1	63118195	63118196	rs10889353	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p31.3	NR	rs10889353-?	NR	8E-10		2.005335	[1.36-2.65] unit decrease	Illumina [31808917] (imputed)	N
1066	chr1	63118195	63118196	rs10889353	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	1p31.3	ANGPTL3	rs10889353-C	0.14	2E-9		0.126	[0.085-0.167] unit decrease	Illumina [561583]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	7E-10	(VLDL.small, whole)	1.323	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	3E-10	(VLDL.medium, fasting)	1.32	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	2E-11	(TG.by.NMR, fasting)	0.035	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	1E-14	(VLDL.total, whole)	2.973	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	1E-13	(TG.by.NMR, whole)	0.033	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p31.3	ANGPTL3	rs10889353-?	NR	1E-12	(VLDL.total, fasting)	2.688	[NR] unit decrease	Illumina [335603]	N
1066	chr1	63118195	63118196	rs10889353	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	1p31.3	DOCK7	rs10889353-C	0.32	8E-6		0.06	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1066	chr1	63118195	63118196	rs10889353	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p31.3	DOCK7	rs10889353-C	0.32	4E-12		0.08	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1066	chr1	63118195	63118196	rs10889353	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p31.3	ANGPTL3	rs10889353-C	0.33	3E-7		0.05	[0.01-0.09] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1066	chr1	63120370	63120371	rs1168097	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168097-C	NR	3E-28		0.1528	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p31.3		rs60286666-T	0.359743	7E-61		0.0669509	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs60286666-T	0.359756	9E-55		0.0649769	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p31.3		rs60286666-T	0.359756	2E-94		0.0860011	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p31.3		rs60286666-T	0.359537	3E-29		0.0465738	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p31.3		rs60286666-T	0.359537	6E-25		0.0427195	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1066	chr1	63121101	63121101	rs60286666	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	1p31.3		rs60286666-?	NR	2E-9		0.00572848	[0.0039-0.0076] unit decrease	NR [NR]	N
1066	chr1	63121101	63121101	rs60286666	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p31.3	DOCK7	rs60286666-TC	0.6381	9E-33		0.04483325	[0.037-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1066	chr1	63121293	63121294	rs1168098	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168098-G	NR	3E-28		0.1211	[0.1-0.143] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63122858	63122859	rs1168099	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168099-A	NR	3E-28		0.1526	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p31.3		rs4495740-G	NR	1E-40		0.0716	[0.061-0.082] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4495740-G	NR	1E-11		0.0578	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1p31.3	DOCK7	rs4495740-?	NR	8E-47		0.02987	[0.026-0.034] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	9E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	7E-39	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	3E-72	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	3E-123				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	2E-12	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	3E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	3E-130				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	1E-78	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	1E-37	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	1E-13	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	4E-38	(EA)	0.035	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-69		0.034	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-11	(Hispanic)	0.044	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	1E-9	(AA)	0.031	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	1E-19	(Asian)	0.032	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	7E-8	(AA)	0.034	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-17	(Asian)	0.031	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-12	(Hispanic)	0.057	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	2E-53		0.035	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	2E-22	(EA)	0.035	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	2E-57				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	1E-54	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	9E-58	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	8E-63				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-25	(EA)	1.936	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	2E-28		1.671	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	3E-21		1.723	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	2E-16	(EA)	2.053	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p31.3	DOCK7	rs4495740-G	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p31.3	DOCK7	rs4495740-G	NR	2E-7				Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p31.3	DOCK7	rs4495740-G	NR	7E-6	(EA)	0.005	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr1	63124464	63124465	rs4495740	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	1p31.3	NR	rs4495740-T	0.6678	2E-86				Affymetrix, Illumina [at least 2500000] (imputed)	N
1066	chr1	63127704	63127705	rs1168102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168102-C	NR	3E-28		0.0784	[0.064-0.092] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63128080	63128081	rs1168103	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	1p31.3	DOCK7, ATG4C, USP1	rs1168103-T	NR	7E-7		4.968	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1066	chr1	63128324	63128325	rs1168104	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168104-G	NR	3E-28		0.0744	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63129081	63129082	rs10889354	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889354-C	NR	5E-32		0.0937	[0.078-0.109] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63130430	63130431	rs11208001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11208001-T	NR	1E-30		0.0929	[0.077-0.109] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63130990	63130991	rs2479464	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs2479464-A	NR	5E-13		0.0648	[0.047-0.082] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63133467	63133468	rs1168132	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168132-G	NR	3E-28		0.0675	[0.056-0.079] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63133467	63133468	rs1168132	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p31.3	DOCK7	rs1168132-?	NR	2E-25		1.661	[1.3-2.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1066	chr1	63133929	63133930	rs4587594	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4587594-C	NR	1E-11		0.0815	[0.058-0.105] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63133929	63133930	rs4587594	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	1p31.3		rs4587594-A	0.36	7E-27		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1066	chr1	63133929	63133930	rs4587594	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p31.3		rs4587594-A	0.3444	1E-19		1.4499	[1.14-1.76] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1066	chr1	63135623	63135624	rs28399032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs28399032-G	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63135845	63135846	rs1168128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168128-T	NR	3E-28		0.1355	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63135845	63135846	rs1168128	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	ANGPTL3	rs1168128-G	0.6603125	7E-16	(ANGPTL3, 10391_1_3)	0.20790301	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1066	chr1	63136077	63136078	rs1168127	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p31.3	DOCK7	rs1168127-C	0.353952	2E-70		0.0386982	[0.034-0.043] unit decrease	Affymetrix [NR] (imputed)	N
1066	chr1	63139729	63139730	rs1168124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168124-G	NR	3E-28		0.0733	[0.06-0.086] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63144919	63144920	rs71643639	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs71643639-C	NR	5E-10		0.033	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1066	chr1	63145438	63145439	rs11208004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11208004-A	NR	1E-30		0.0737	[0.061-0.086] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63145438	63145439	rs11208004	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs11208004-?	NR	5E-10	(LA)	0.0677113	NR unit decrease	Illumina [609262]	N
1066	chr1	63145438	63145439	rs11208004	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs11208004-?	NR	4E-11	(M_VLDL_FC)	0.035778996	NR unit decrease	Illumina [609262]	N
1066	chr1	63145438	63145439	rs11208004	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs11208004-?	NR	6E-9	(LA)	0.06882676	NR unit decrease	Illumina [609262]	N
1066	chr1	63145438	63145439	rs11208004	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs11208004-?	NR	4E-6	(M_VLDL_FC)	0.06809631	NR unit decrease	Illumina [609262]	N
1066	chr1	63145438	63145439	rs11208004	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	1p31.3	DOCK7	rs11208004-A	0.1731	9E-6		8.0956	[4.52-11.67] unit decrease	Affymetrix [NR] (imputed)	N
1066	chr1	63145438	63145439	rs11208004	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p31.3	ANGPTL3	rs11208004-A	0.295	3E-82	(Trans-ethnic initial)	0.0758	[0.069-0.083] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1066	chr1	63145438	63145439	rs11208004	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p31.3	ANGPTL3	rs11208004-A	0.187	2E-6	(Asian initial, BMI unadjusted)	0.0494	[0.029-0.07] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1066	chr1	63147039	63147040	rs7531579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7531579-C	NR	3E-10		0.0482	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63152554	63152554	rs113655880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p31.3		rs113655880-GA	NR	8E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1066	chr1	63153199	63153204	rs68148663	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p31.3	DOCK7	rs68148663-?	0.3422	9E-12		0.0195	[0.014-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1066	chr1	63153952	63153953	rs4344355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p31.3		rs4344355-T	NR	1E-15		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1066	chr1	63153952	63153953	rs4344355	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4344355-G	NR	1E-11		0.0556	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63155348	63155349	rs10889356	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889356-T	NR	5E-32		0.0969	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63156042	63156043	rs1168114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168114-G	NR	3E-28		0.1448	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63156042	63156043	rs1168114	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p31.3	DOCK7	rs1168114-A	0.347628	7E-15		0.0155704	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1066	chr1	63156097	63156098	rs1168113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168113-A	NR	3E-28		0.0672	[0.055-0.079] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63156097	63156098	rs1168113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs1168113-C	0.66727	4E-12				Affymetrix, Illumina [24588908] (imputed)	N
1066	chr1	63160281	63160282	rs10889357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889357-G	NR	6E-32		0.0968	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63161172	63161173	rs1168107	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1p31.3		rs1168107-A	0.350928	2E-19		0.037531	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63161172	63161173	rs1168107	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p31.3		rs1168107-A	0.350928	3E-11		0.0277305	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63161172	63161173	rs1168107	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs1168107-C	NR	3E-28		0.0821	[0.068-0.097] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63163072	63163073	rs12136083	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs12136083-C	NR	4E-27		0.0803	[0.066-0.095] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63163072	63163073	rs12136083	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs12136083-?	NR	2E-12	(PUFA)	0.03943577	NR unit decrease	Illumina [609262]	N
1066	chr1	63163072	63163073	rs12136083	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p31.3	DOCK7	rs12136083-?	NR	8E-9	(PUFA)	0.07038047	NR unit decrease	Illumina [609262]	N
1066	chr1	63167983	63167984	rs7526446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p31.3	RP11-230B22.1	rs7526446-A	0.637599	9E-10		0.01442983	[0.0098-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr1	63171023	63171024	rs569795903	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Triglyceride levels	14,126 African ancestry individuals	NA	1p31.3		rs569795903-C	0.986	9E-22		0.7620945	[0.61-0.92] unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1066	chr1	63171062	63171063	rs6682423	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6682423-G	NR	2E-10		0.079	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63171198	63171199	rs6666816	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6666816-G	NR	2E-10		0.0685	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63173283	63173284	rs880694	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs880694-G	NR	6E-10		0.084	[0.057-0.111] unit decrease	Illumina [6720657] (imputed)	N
1066	chr1	63173917	63173918	rs10889360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs10889360-G	NR	7E-32		0.0891	[0.074-0.104] unit increase	Illumina [6720657] (imputed)	N
1066	chr1	63175287	63175287	rs372296345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p31.3		rs372296345-C	0.723352	1E-12		0.0332887	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1066	chr1	63175287	63175287	rs372296345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p31.3		rs372296345-C	0.723172	1E-8		0.0263056	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1066	chr1	63176082	63176083	rs11208007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11208007-C	NR	2E-30		0.0748	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1067	chr1	63177364	63177365	rs4409689	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4409689-C	NR	1E-11		0.098	[0.07-0.126] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63177538	63177539	rs60152331	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p31.3		rs60152331-G	0.623	3E-12		0.08	[-0.1--0.06] % decrease	Affymetrix [NR] (imputed)	N
1067	chr1	63177695	63177696	rs7518497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs7518497-A	NR	3E-10		0.1041	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63179137	63179138	rs9787151	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9787151-C	NR	8E-10		0.0705	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63179211	63179212	rs9787156	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs9787156-G	NR	8E-10		0.0754	[0.051-0.1] unit increase	Illumina [6720657] (imputed)	N
1067	chr1	63182134	63182135	rs6686331	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6686331-T	NR	2E-10		0.0735	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63182134	63182135	rs6686331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.3	NR	rs6686331-T	0.650226	1E-13		0.014215	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1067	chr1	63191576	63191577	rs4915853	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs4915853-C	NR	2E-11		0.0551	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	3E-119		0.0673	[0.062-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	4E-107		0.0637	[0.058-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	4E-9		0.0171	[0.011-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	2E-65		0.0496	[0.044-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	5E-41		0.039	[0.033-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p31.3	NR	rs12130333-T	NR	6E-40		0.0402	[0.034-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	1p31.3	NR	rs12130333-?	NR	8E-8		0.0302008	[0.019-0.041] unit decrease	Illumina [31978265] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p31.3	NR	rs12130333-?	NR	1E-6		2.358526	[1.41-3.31] unit decrease	Illumina [32003504] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	1p31.3	DOCK7, ANGPTL3, ATG4C	rs12130333-A	0.1846	2E-8		3.540935	[2.31-4.77] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1067	chr1	63191776	63191777	rs12130333	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	1p31.3	DOCK7, ANGPTL3, ATG4C	rs12130333-T	0.22	2E-8		0.11	[0.07-0.15] unit decrease	Affymetrix [389878]	N
1067	chr1	63195691	63195692	rs11208009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs11208009-G	NR	2E-30		0.1062	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1067	chr1	63199935	63199936	rs6679002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	1p31.3		rs6679002-C	NR	2E-10		0.0565	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1067	chr1	63199935	63199936	rs6679002	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p31.3	ANGPTL3	rs6679002-T	0.59	2E-15	(X-03094)	0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1067	chr1	63210813	63210814	rs12124310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs12124310-A	NR	4E-38		0.0369	[0.031-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1067	chr1	63210813	63210814	rs12124310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs12124310-A	NR	5E-30		0.0325	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1067	chr1	63210813	63210814	rs12124310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p31.3	NR	rs12124310-A	NR	3E-21		0.027	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1067	chr1	63210813	63210814	rs12124310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p31.3	NR	rs12124310-A	NR	5E-13		0.0207	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1067	chr1	63210813	63210814	rs12124310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p31.3	NR	rs12124310-A	NR	3E-9		0.0178	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1067	chr1	63230771	63230772	rs76269172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs76269172-A	NR	2E-10		0.0426	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63230771	63230772	rs76269172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs76269172-A	NR	2E-11		0.0445	[0.031-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63261651	63261652	rs12122434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1p31.3	NR	rs12122434-G	NR	7E-14		0.049	[0.036-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63261651	63261652	rs12122434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs12122434-G	NR	2E-10		0.0419	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1067	chr1	63299729	63299731	rs551767003	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	1p31.3		rs551767003-?	NR	4E-9		0.120763	[0.081-0.161] unit increase	NR [9800000] (imputed)	N
1068	chr1	63348121	63348122	rs78672300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs78672300-A	NR	5E-10		0.0508	[0.035-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1068	chr1	63421616	63421617	rs183823570	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	1p31.3	NR	rs183823570-G		5E-6		0.6947	[0.4-0.99] SD units increase	NR [10700000] (imputed)	N
1069	chr1	63446856	63446857	rs72671743	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p31.3	NR	rs72671743-?	NR	8E-6		5.409	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1069	chr1	63452788	63452789	rs6696619	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	1p31.3	ATG4C, LINC00466	rs6696619-?	NR	2E-6				Illumina [491617]	N
1069	chr1	63474880	63474881	rs4915863	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	1p31.3	ATG4C	rs4915863-A	0.1	9E-6		0.00275	[0.0015-0.004] unit increase	Affymetrix [1219546] (imputed)	N
1069	chr1	63480729	63480730	rs17124318	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	1p31.3	ATG4C	rs17124318-C	0.87	4E-6		3.98	[2.30-5.66] kg increase	Affymetrix [2073674] (imputed)	N
1069	chr1	63480729	63480730	rs17124318	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	1p31.3	ATG4C	rs17124318-C	0.87	6E-7		0.07	[0.04-0.10] unit increase	Affymetrix [2073674] (imputed)	N
1069	chr1	63488227	63488228	rs4915866	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	1p31.3		rs4915866-G	NR	6E-6		0.94	unit decrease	Illumina [474792]	N
1069	chr1	63489339	63489340	rs883398	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	1p31.3		rs883398-A	NR	2E-6		0.98	unit decrease	Illumina [474792]	N
1069	chr1	63533934	63533935	rs7537459	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1p31.3	LOC105378769, LINC00466	rs7537459-?	NR	5E-6		2.7027025		Illumina [6778521] (imputed)	N
1069	chr1	63544989	63544990	rs72674216	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p31.3	RP11-5P4.3	rs72674216-A	NR	9E-8		0.959753	[0.61-1.31] unit increase	Illumina [NR] (imputed)	N
1069	chr1	63560851	63560852	rs139190063	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p31.3	NR	rs139190063-?	NR	8E-6		0.934064	[0.52-1.34] unit increase	NR [13958389] (imputed)	N
1069	chr1	63565152	63565153	rs80206427	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.3	intergenic	rs80206427-T	0.965	2E-19		0.0449	[0.035-0.055] unit decrease	Affymetrix [18391927] (imputed)	N
1069	chr1	63565152	63565153	rs80206427	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.3	NR	rs80206427-C	0.02613	2E-8	(GNMT)	0.81	NR unit increase	Illumina [1671387] (imputed)	N
1070	chr1	63577212	63577213	rs72923401	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	1p31.3		rs72923401-C	0.86	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1070	chr1	63586972	63586973	rs7526034	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	1p31.3	LOC199897	rs7526034-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
1070	chr1	63591128	63591129	rs10493340	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	1p31.3	intergenic	rs10493340-?	NR	2E-6	(SBP)			Affymetrix [70897]	N
1071	chr1	63716840	63716841	rs79038692	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.3	LINC00466	rs79038692-?		2E-6				Illumina [4322238] (imputed)	N
1071	chr1	63727541	63727542	rs670318	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA	1p31.3	LINC00466	rs670318-?	NR	8E-6	(male)	0.999992	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1071	chr1	63727541	63727542	rs670318	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.3	LINC00466	rs670318-T	0.0485	3E-21		0.0413	[0.033-0.05] unit decrease	Affymetrix [18391927] (imputed)	N
1071	chr1	63727541	63727542	rs670318	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1p31.3	LINC00466	rs670318-C	0.9535	1E-8		1.1566043	NR	Affymetrix, Illumina [NR] (imputed)	N
1071	chr1	63727541	63727542	rs670318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs670318-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1071	chr1	63733118	63733119	rs76500500	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	1p31.3	LINC00466	rs76500500-?		2E-7				Illumina [2668805]	N
1071	chr1	63781139	63781140	rs78720768	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	1p31.3		rs78720768-?	NR	4E-6	(lmp)	2.2		Illumina [11595112] (imputed)	N
1071	chr1	63820275	63820276	rs12407262	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	1p31.3	NR	rs12407262-G		4E-6		0.1179	[0.066-0.17] SD units decrease	NR [10700000] (imputed)	N
1071	chr1	63822432	63822433	rs183068503	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA8904 abundance in stool	5,959 Finnish ancestry individuals	NA	1p31.3		rs183068503-T	0.0229111	3E-8		0.0876485	[0.057-0.119] unit increase	Illumina [7980478] (imputed)	N
1072	chr1	63836060	63836061	rs115204443	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1p31.3	ALG6	rs115204443-A	0.0187	9E-6		0.0262	[0.015-0.038] unit increase	Affymetrix [~ 7740000] (imputed)	N
1072	chr1	63901427	63901428	rs3004316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p31.3	ALG6	rs3004316-A	0.68975	1E-9		0.014635965	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1072	chr1	63901427	63901428	rs3004316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p31.3		rs3004316-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1072	chr1	63902430	63902431	rs12023577	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	1p31.3	NR	rs12023577-A	0.9873	2E-9		2.2359	[1.5-2.97] unit increase	Affymetrix, Illumina [12989706] (imputed)	N
1072	chr1	63941201	63941202	rs6588035	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	1p31.3		rs6588035-?	NR	5E-6		0.258	[0.15-0.37] unit decrease	Illumina [5082878] (imputed)	N
1073	chr1	64031049	64031050	rs217470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p31.3	ITGB3BP, EFCAB7	rs217470-A	0.688606	1E-12		0.016942473	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1073	chr1	64032282	64032283	rs1740397	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	1p31.3		rs1740397-A	0.515	1E-10	(EA)	6.421	NR z score decrease	Illumina [11532091] (imputed)	N
1074	chr1	64097431	64097432	rs1126728	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	PGM1	rs1126728-T	0.228	3E-23	(Phosphoglucomutase-1, PGM1.9173.21.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr1	64107283	64107284	rs2269247	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	1p31.3	PGM1	rs2269247-T		2E-6		0.13817546	[0.081-0.195] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
1074	chr1	64107283	64107284	rs2269247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p31.3	NR	rs2269247-C	0.8135	6E-9		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1074	chr1	64107283	64107284	rs2269247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p31.3	NR	rs2269247-C	0.8094	3E-13		0.0356	[0.026-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1074	chr1	64107283	64107284	rs2269247	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	1p31.3	PGM1	rs2269247-T	0.18	1E-10		1.17	[1.12-1.23]	Affymetrix, Illumina [9061522] (imputed)	N
1074	chr1	64107892	64107893	rs2269245	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1p31.3	PGM1	rs2269245-G	0.815	5E-10		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1074	chr1	64108681	64108682	rs2269242	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA		PGM1	rs2269242-C	0.196	5E-12		1.11		Illumina [715631] (imputed)	N
1074	chr1	64108681	64108682	rs2269242	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA		PGM1	rs2269242-C	0.196	5E-12		1.11		Illumina [715631] (imputed)	N
1074	chr1	64108770	64108771	rs2269241	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	1p31.3	PGM1	rs2269241-G	0.19	4E-7		1.1	[1.02-1.18]	Affymetrix, Illumina [841622] (imputed)	N
1074	chr1	64113888	64113889	rs855330	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1p31.3	PGM1	rs855330-C	0.259422	5E-11		0.111207716	[0.078-0.144] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1074	chr1	64118800	64118801	rs2360159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs2360159-C	NR	3E-9		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr1	64118914	64118915	rs2269235	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.3	NR	rs2269235-G	0.2422	2E-13	(PGM1)	0.7073	NR unit decrease	Illumina [1671387] (imputed)	N
1074	chr1	64119345	64119346	rs2269233	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	NR	rs2269233-C	0.185	5E-23	(Phosphoglucomutase-1, PGM1.9173.21.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr1	64121568	64121569	rs7541882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p31.3		rs7541882-C	NR	6E-12		0.0161	[0.012-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1074	chr1	64127467	64127468	rs2749097	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	1p31.3	PGM1	rs2749097-G	0.19	2E-9	(CDT percent)	0.12	[0.08-0.16] unit decrease	Affymetrix [390631] (imputed)	N
1074	chr1	64127661	64127662	rs2749096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.3	NR	rs2749096-C	0.2038	6E-13	(PGM1)	0.7325	NR unit decrease	Illumina [1671387] (imputed)	N
1074	chr1	64128208	64128209	rs2013012	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.3	NR	rs2013012-T	0.2805	2E-9	(PGM1)	0.5526	NR unit decrease	Illumina [1671387] (imputed)	N
1074	chr1	64162007	64162008	rs192166173	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p31.3	Intergenic	rs192166173-A	0.999	4E-6	(AA)	0.342	unit increase	Illumina [NR] (imputed)	N
1074	chr1	64212624	64212625	rs2819184	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p31.3	ROR1	rs2819184-?		1E-8				NR [7428630] (imputed)	N
1074	chr1	64215319	64215320	rs1627221	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.3		rs1627221-C	0.18	2E-24		10.18	z score increase	Affymetrix [9061022] (imputed)	N
1074	chr1	64215430	64215431	rs1628254	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1628254-T	0.1627	1E-17				NR [9056863] (imputed)	N
1074	chr1	64216550	64216551	rs1766362	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p31.3	MACF1, KIAA0754, BMP8A, PABPC4	rs1766362-?		6E-9				NR [7428630] (imputed)	N
1074	chr1	64217387	64217388	rs1701531	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p31.3		rs1701531-A	0.18	7E-21		9.38	z score increase	Affymetrix [9061022] (imputed)	N
1074	chr1	64217387	64217388	rs1701531	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1701531-A	0.1629	1E-17				NR [9056863] (imputed)	N
1074	chr1	64224560	64224560	rs35082445	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p31.3		rs35082445-?	NR	7E-15				NR [9705931] (imputed)	N
1075	chr1	64231687	64231688	rs12723887	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs12723887-A	0.18	3E-39		13.11	z score increase	Affymetrix [9061022] (imputed)	N
1075	chr1	64235726	64235727	rs4915928	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p31.3	NR	rs4915928-A	0.1455	2E-9	(Superior Frontal)	32.851543	[22.15-43.56] unit increase	Affymetrix, Illumina [NR]	N
1075	chr1	64258448	64258448	rs200046222	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	1p31.3	NR	rs200046222-C		9E-6		0.0795	[0.044-0.115] SD units decrease	NR [10700000] (imputed)	N
1075	chr1	64258450	64258450	rs11392719	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	1p31.3	NR	rs11392719-TA		7E-6		0.0837	[0.047-0.12] SD units increase	NR [10700000] (imputed)	N
1075	chr1	64275419	64275420	rs11208297	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	1p31.3	ROR1	rs11208297-?	NR	2E-10	(>=14 yr)			Illumina [747780]	N
1077	chr1	64538960	64538961	rs1747924	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	1p31.3	ROR1	rs1747924-A	0.767	7E-6		1.1111112	[1.06-1.16]	Illumina [866891] (imputed)	N
1077	chr1	64614494	64614495	rs1408416	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	ROR1	rs1408416-T	0.162	2E-40	(Tyrosine-protein kinase transmembrane receptor ROR1, ROR1.2590.69.4)	0.44	[0.38-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
1077	chr1	64617793	64617794	rs147482589	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.3	NR	rs147482589-?	NR	7E-6		4.505	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1078	chr1	64625145	64625146	rs6671162	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	ROR1	rs6671162-A	0.6765625	3E-15	(ROR1, 2590_69_4)	0.19881703	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1078	chr1	64625776	64625777	rs7515787	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROR1	5,362 Icelandic ancestry individuals	NA	1p31.3		rs7515787-C	0.3197	9E-26		0.202637	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1078	chr1	64643276	64643277	rs7527017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p31.3		rs7527017-T	0.35	3E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1078	chr1	64643276	64643277	rs7527017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.3		rs7527017-T	0.35	8E-15		7.77	z score increase	Affymetrix [9061022] (imputed)	N
1078	chr1	64643276	64643277	rs7527017	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p31.3	NR	rs7527017-T	0.3236	3E-10				NR [9056863] (imputed)	N
1078	chr1	64643276	64643277	rs7527017	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.3	NR	rs7527017-T	0.3236	7E-14				NR [9056863] (imputed)	N
1078	chr1	64646751	64646752	rs12135035	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	ROR1	rs12135035-C	0.6703125	3E-14	(ROR1, 8474_6_3)	0.18854144	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1078	chr1	64650627	64650628	rs12080955	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	ROR1	rs12080955-C	0.67203125	2E-7	(ROR1, 13400_13_3)	0.13338667	[0.083-0.184] unit increase	Illumina [> 1000000] (imputed)	N
1078	chr1	64654789	64654790	rs9970705	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROR1	5,366 Icelandic ancestry individuals	NA	1p31.3		rs9970705-G	0.3716	3E-27		0.199544	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1078	chr1	64654789	64654790	rs9970705	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROR1	5,365 Icelandic ancestry individuals	NA	1p31.3		rs9970705-G	0.3716	6E-13		0.138596	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1078	chr1	64657254	64657255	rs12025245	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs12025245-T	0.33	2E-31		11.66	z score increase	Affymetrix [9061022] (imputed)	N
1078	chr1	64657254	64657255	rs12025245	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p31.3		rs12025245-?	NR	2E-10				NR [9705931] (imputed)	N
1078	chr1	64680774	64680775	rs12081070	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Severe bacterial meningitis	277 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	1p31.3	UBE2U, ROR1	rs12081070-A	NR	2E-8		1.62	NR	Illumina [6800000] (imputed)	N
1079	chr1	64817986	64817987	rs141385851	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p31.3	NR	rs141385851-G	NR	3E-6	(GEE model)	0.85234	[0.49-1.21] unit decrease	NR [NR] (imputed)	N
1079	chr1	64836645	64836646	rs1514964	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p31.3	NR	rs1514964-C	0.0453	9E-6	(EA)	0.071	[0.04-0.102] unit increase	Illumina [~ 11800000] (imputed)	N
1079	chr1	64867601	64867602	rs10789158	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (all cytogenetic sub-types)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	1p31.3		rs10789158-C	NR	2E-7		1.22	[1.13-1.31]	Affymetrix, Illumina [6661818] (imputed)	N
1079	chr1	64868351	64868352	rs11208446	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	1p31.3	RNU7-62P	rs11208446-A	0.275	9E-6		0.12	[0.067-0.172] unit increase	Affymetrix [808465]	N
1081	chr1	65098308	65098309	rs61731122	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs61731122-A	0.04	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
1081	chr1	65098308	65098309	rs61731122	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.3		rs61731122-A	0.04	1E-9		6.12	z score increase	Affymetrix [9061022] (imputed)	N
1081	chr1	65098308	65098309	rs61731122	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.3	NR	rs61731122-A	0.0309	8E-11				NR [9056863] (imputed)	N
1081	chr1	65098308	65098309	rs61731122	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1p31.3	NR	rs61731122-A	NR	2E-9		0.04219	[0.028-0.056] unit decrease	Affymetrix [10847151] (imputed)	N
1081	chr1	65135067	65135068	rs11208499	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	1p31.3	CACHD1	rs11208499-C	0.33	1E-6	(female)	0.19	[0.11-0.27] unit decrease	Illumina [6380737] (imputed)	N
1082	chr1	65155171	65155172	rs78248443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs78248443-T	NR	2E-10		0.0363	[0.025-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr1	65170404	65170405	rs11208512	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	1p31.3	intergenic	rs11208512-T	0.417	6E-6				Illumina [622468]	N
1082	chr1	65209110	65209111	rs114695117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs114695117-A	NR	8E-11		0.049	[0.034-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr1	65209110	65209111	rs114695117	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p31.3	RAVER2	rs114695117-A	0.0268	7E-10		0.06802429	[0.046-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr1	65214011	65214012	rs72675408	34521259	Sundbaum JK	2021-09-15	Pharmacogenomics	Genome-wide association study of liver enzyme elevation in rheumatoid arthritis patients starting methotrexate.	Alanine aminotransferase level after methotrexate initiation in rheumatoid arthritis	194 individuals	160 individuals	1p31.3		rs72675408-?	NR	4E-8		0.62	[0.4-0.85] unit increase	Illumina [7585873] (imputed)	N
1082	chr1	65229298	65229299	rs12752552	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	1p31.3	RAVER2	rs12752552-T	NR	1E-6	(males)	1.25	[1.14-1.37]	Affymetrix, Illumina [NR] (imputed)	N
1082	chr1	65229298	65229299	rs12752552	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	1p31.3	RAVER2	rs12752552-T	NR	3E-6	(males)	1.28	[1.15-1.42]	Affymetrix, Illumina [NR] (imputed)	N
1082	chr1	65229298	65229299	rs12752552	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	1p31.3	RAVER2	rs12752552-T	0.87	4E-9		1.18	1.11-1.24	Illumina [at least 6887412] (imputed)	N
1082	chr1	65229298	65229299	rs12752552	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	1p31.3	RAVER2	rs12752552-T	0.87	2E-9		1.22	1.15-1.31	Illumina [at least 6790270] (imputed)	N
1083	chr1	65298970	65298971	rs9128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p31.3		rs9128-T	NR	2E-14		0.0614	[0.046-0.077] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1083	chr1	65298970	65298971	rs9128	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.3	JAK1	rs9128-T	0.0121	3E-25		0.0944	[0.077-0.112] unit increase	Affymetrix [18391927] (imputed)	N
1083	chr1	65298970	65298971	rs9128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs9128-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1083	chr1	65305876	65305877	rs310244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.3	NR	rs310244-A	0.191665	1E-11		0.015759	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1083	chr1	65312367	65312368	rs149968614	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1p31.3		rs149968614-?	NR	2E-12		0.168815	[0.12-0.22] unit increase	NR [9800000] (imputed)	N
1083	chr1	65314211	65314212	rs114269697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p31.3	JAK1	rs114269697-A	0.013202	4E-15		0.07836825	[0.059-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr1	65314211	65314212	rs114269697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p31.3	JAK1	rs114269697-A	0.013199	9E-19		0.08829187	[0.069-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr1	65314211	65314212	rs114269697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p31.3		rs114269697-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1083	chr1	65314211	65314212	rs114269697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p31.3		rs114269697-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1083	chr1	65314211	65314212	rs114269697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p31.3	JAK1	rs114269697-A	0.0139	3E-11		0.1050857	[0.074-0.136] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr1	65321304	65321305	rs368776025	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1p31.3		rs368776025-?	NR	3E-19		0.828941	[0.65-1.01] unit increase	NR [9800000] (imputed)	N
1083	chr1	65329099	65329100	rs2780902	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	1p31.3	NR	rs2780902-?	0.41	3E-7	(African American, dominant)	1.923077	[1.52-2.5]	Affymetrix [NR]	N
1083	chr1	65329222	65329223	rs35358275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p31.3	JAK1	rs35358275-T	0.293515	2E-10		0.015687825	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr1	65340816	65340817	rs310231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p31.3	JAK1	rs310231-G	0.265199	5E-10		0.015809536	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr1	65360948	65360949	rs72920202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	1p31.3		rs72920202-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1083	chr1	65371417	65371418	rs4916009	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced proteinuria	1,039 European ancestry individuals	NA	1p31.3	JAK1	rs4916009-?	0.09	9E-6		1.24	[0.69-1.79] unit increase	Illumina [828141]	N
1083	chr1	65371417	65371418	rs4916009	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p31.3	JAK1	rs4916009-C	0.909452	2E-14		0.00297649	[0.0022-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
1083	chr1	65371417	65371418	rs4916009	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p31.3	NR	rs4916009-T	NR	6E-11		0.0274	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr1	65371417	65371418	rs4916009	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p31.3	NR	rs4916009-T	NR	1E-9		0.0257	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr1	65371417	65371418	rs4916009	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs4916009-T	NR	1E-15		0.0335	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr1	65371417	65371418	rs4916009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p31.3		rs4916009-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1084	chr1	65406255	65406256	rs1969026	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs1969026-T	0.972192	3E-9		0.0383184	[0.026-0.051] unit increase	NR [NR]	N
1084	chr1	65412136	65412137	rs17127169	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	1p31.3	NR	rs17127169-G	0.085	5E-6	(EA)	0.08	[0.047-0.113] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1084	chr1	65412829	65412830	rs11208552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.3		rs11208552-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1084	chr1	65415374	65415375	rs144573130	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	1p31.3	NR	rs144573130-C	NR	3E-8		5.53	z score increase	NR [9015039] (imputed)	N
1084	chr1	65422861	65422862	rs11208556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p31.3	JAK1	rs11208556-C	0.716926	8E-15		0.019049177	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p31.3	JAK1	rs12408934-A	0.103323	5E-36		0.04609883	[0.039-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p31.3	JAK1	rs12408934-A	0.103341	6E-27		0.03944016	[0.032-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p31.3	NR	rs12408934-A	0.10259	2E-36		0.041319	[0.035-0.048] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p31.3	JAK1	rs12408934-A	0.1013	9E-11		0.03830149	[0.027-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p31.3	JAK1	rs12408934-A	0.1013	1E-12		0.04195475	[0.03-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p31.3	JAK1	rs12408934-A	0.1012	3E-16		0.04829266	[0.037-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p31.3	JAK1	rs12408934-A	0.1013	7E-15		0.04611714	[0.035-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr1	65423446	65423447	rs12408934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p31.3	JAK1	rs12408934-A	0.1012	6E-14		0.04434071	[0.033-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr1	65428531	65428532	rs7550068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs7550068-G	0.761035	8E-20				Affymetrix, Illumina [23472807] (imputed)	N
1084	chr1	65428531	65428532	rs7550068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p31.3	NR	rs7550068-G	0.786601	9E-18		0.019785	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p31.3		rs72922276-A	NR	1E-9		0.0896	[0.061-0.118] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p31.3		rs72922276-A	NR	2E-20		0.026	[0.021-0.031] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p31.3		rs72922276-G	0.889	1E-9				Affymetrix [10369434] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p31.3	JAK1, RAVER2	rs72922276-G	0.891	5E-10		1.098901	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p31.3	JAK1	rs72922276-G	NR	1E-15		1.1642	NR	Affymetrix, Illumina [8278136] (imputed)	N
1084	chr1	65429318	65429319	rs72922276	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p31.3	JAK1	rs72922276-A	0.108775	1E-9		0.08958017	[0.061-0.118] unit decrease	Affymetrix [7288503] (imputed)	N
1084	chr1	65435424	65435425	rs56818621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p31.3		rs56818621-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1084	chr1	65436241	65436242	rs6682237	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p31.3		rs6682237-A	0.876	1E-19				Affymetrix [10369434] (imputed)	N
1084	chr1	65436241	65436242	rs6682237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs6682237-C	0.159626	2E-34				Affymetrix, Illumina [19872809] (imputed)	N
1084	chr1	65445541	65445542	rs11579758	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p31.3		rs11579758-G	0.243	1E-8				Affymetrix [10369434] (imputed)	N
1084	chr1	65445541	65445542	rs11579758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p31.3	RP11-182I10.3	rs11579758-A	0.756791	5E-15		0.020288663	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr1	65447791	65447792	rs530454918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p31.3	RP11-182I10.3	rs530454918-A	0.105992	2E-15		0.02912065	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr1	65448452	65448452	rs150573149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p31.3	RP11-182I10.3	rs150573149-CT	0.103824	1E-20		0.034450054	[0.027-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr1	65472322	65472323	rs555038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p31.3		rs555038-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1084	chr1	65515532	65515533	rs478665	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	1p31.3	NR	rs478665-?	0.05	1E-6		1.772	[1.407-2.233] unit increase	Illumina [563945]	N
1084	chr1	65525900	65525901	rs489500	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	1p31.3	JAK1	rs489500-G	0.0139	9E-6		9.476	[NR] unit increase	Illumina [4827900] (imputed)	N
1085	chr1	65544150	65544151	rs10889518	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	1p31.3	JAK1	rs10889518-T	NR	3E-6	(women)	0.315	[0.18-0.45] unit decrease	Illumina [5527232] (imputed)	N
1085	chr1	65544150	65544151	rs10889518	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	1p31.3	JAK1	rs10889518-T	NR	1E-7		0.269	[0.17-0.37] unit decrease	Illumina [5527232] (imputed)	N
1085	chr1	65569764	65569765	rs10458575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p31.3		rs10458575-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1085	chr1	65634453	65634454	rs113091602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	1p31.3		rs113091602-C	0.996419	4E-8		0.19537	[0.13-0.26] unit increase	NR [11722792] (imputed)	N
1085	chr1	65655102	65655103	rs142603322	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs142603322-A	0.95191	4E-13		0.0353453	[0.026-0.045] unit decrease	NR [NR]	N
1086	chr1	65679036	65679037	rs150852956	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs150852956-G	0.964787	1E-39		0.0738052	[0.063-0.085] unit decrease	NR [NR]	N
1086	chr1	65696033	65696034	rs1855981	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs1855981-C	NR	2E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1086	chr1	65696188	65696189	rs13374371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs13374371-G	NR	1E-12		0.0259	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1086	chr1	65781900	65781901	rs11208629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs11208629-A	NR	2E-13		0.0323	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1087	chr1	65799439	65799440	rs17127529	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	1p31.3	DNAJC6, AK4	rs17127529-?	NR	3E-6		1.923077	[1.45-2.5]	Affymetrix [509886]	N
1087	chr1	65810600	65810601	rs116509635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs116509635-T	NR	2E-14		0.0686	[0.051-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1087	chr1	65815658	65815659	rs1413885	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	1p31.3	DNAJC6	rs1413885-C	0.322	3E-7	(fPS)	0.428	[NR] SD increase	Illumina [283437]	N
1087	chr1	65816566	65816567	rs10789181	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p31.3	LEPR	rs10789181-A	0.39	4E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1087	chr1	65830607	65830608	rs1570868	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs1570868-T	0.424166	8E-23		0.0194399	[0.016-0.023] unit decrease	NR [NR]	N
1087	chr1	65848033	65848034	rs6672992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.3		rs6672992-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1087	chr1	65849886	65849887	rs61753391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs61753391-A	NR	9E-12		0.0515	[0.037-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1087	chr1	65879251	65879252	rs10493377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs10493377-G	NR	2E-18		0.0209	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1087	chr1	65884782	65884783	rs75148473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs75148473-C	NR	9E-11		0.0438	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1087	chr1	65892887	65892888	rs9436299	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p31.3	NR	rs9436299-A	0.6602	7E-8		0.0105	[0.0066-0.0144] unit increase	NR [~ 27400000] (imputed)	N
1087	chr1	65894159	65894160	rs12077210	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	1p31.3	LEPR	rs12077210-?	NR	4E-9		1.671	[1.390-2.008]	Illumina [7412560] (imputed)	N
1087	chr1	65896673	65896674	rs9436303	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	BMI at adiposity peak	6,219 European ancestry children	16,550 European ancestry children	1p31.3	LEPROT, LEPR	rs9436303-G	0.22	8E-9		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [up to 2543888] (imputed)	N
1087	chr1	65906128	65906129	rs67129560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p31.3	LEPR	rs67129560-G	0.619825	5E-11		0.015742904	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr1	65906128	65906129	rs67129560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs67129560-G	0.619797	6E-17		0.01948733	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr1	65906128	65906129	rs67129560	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p31.3	LEPR	rs67129560-A	0.4	5E-49		0.062	[0.054-0.07] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1087	chr1	65906489	65906490	rs970468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p31.3	LEPR	rs970468-A	0.635128	4E-16		0.019654846	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr1	65911518	65911519	rs77451629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs77451629-A	NR	7E-10		0.0445	[0.03-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6285	2E-16		0.03050646	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6284	9E-20		0.03377462	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6285	8E-20		0.03386184	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6284	5E-20		0.03397791	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6284	8E-19		0.03302922	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65911606	65911607	rs9436747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p31.3	LEPR	rs9436747-C	0.6284	1E-19		0.03367764	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr1	65921317	65921318	rs12410063	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	1p31.3	NR	rs12410063-C	0.443973	5E-18		0.0256367	[0.02-0.032] unit increase	Affymetrix [16577424] (imputed)	N
1088	chr1	65932184	65932185	rs4655598	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1p31.3	NR	rs4655598-T	0.448605	2E-8		0.0111549	[0.0072-0.0151] unit increase	Affymetrix [16583148] (imputed)	N
1088	chr1	65934353	65934354	rs61779781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p31.3		rs61779781-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1088	chr1	65939973	65939974	rs61090190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs61090190-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1088	chr1	65942265	65942266	rs17412403	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p31.3	LEPR, RP4-630A11.3	rs17412403-C	0.4638917	9E-14	(Leptin receptor)	0.3282	[0.24-0.41] unit decrease	Affymetrix [509946]	N
1088	chr1	65943871	65943872	rs12409877	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1p31.3	LEPR	rs12409877-A	0.3974	8E-6		0.0407	[0.023-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1088	chr1	65944849	65944850	rs6698653	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs6698653-T	0.522667	4E-209		0.0620907	[0.058-0.066] unit decrease	NR [NR]	N
1088	chr1	65945905	65945906	rs7554485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p31.3		rs7554485-T	0.389	6E-15				Affymetrix [10369434] (imputed)	N
1088	chr1	65947043	65947044	rs7523344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs7523344-C	0.668346	4E-9		0.014233168	[0.0095-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr1	65973220	65973220	rs141509569	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p31.3	NR	rs141509569-G	0.380502	3E-12		0.0200365	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1088	chr1	65975132	65975132	rs141707226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p31.3	LEPR	rs141707226-GT	NR	1E-8		0.0294359	[0.019-0.04] unit increase	Affymetrix [319769] (imputed)	N
1088	chr1	65975132	65975132	rs141707226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p31.3	LEPR	rs141707226-GT	NR	2E-8		0.029293	[0.019-0.039] unit increase	Affymetrix [319769] (imputed)	N
1088	chr1	65975846	65975847	rs6672331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs6672331-C	NR	5E-76		0.1248	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1088	chr1	65976097	65976098	rs77273543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs77273543-G	NR	3E-19		0.0497	[0.039-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1088	chr1	65979279	65979280	rs11208659	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.3	LEPR	rs11208659-T	0.917081	2E-8		0.0139234	[0.0091-0.0188] unit decrease	Affymetrix [12370749]	N
1088	chr1	65979279	65979280	rs11208659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.3		rs11208659-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1088	chr1	65979279	65979280	rs11208659	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.3	LEPR	rs11208659-C	0.08	2E-9		1.42	[1.27-1.59]	Affymetrix [~ 2000000] (imputed)	N
1088	chr1	65987163	65987164	rs11208662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.3		rs11208662-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1088	chr1	65989877	65989878	rs10889560	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p31.3	NR	rs10889560-C	0.9118	4E-9		0.0473	[0.032-0.063] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1088	chr1	65989877	65989878	rs10889560	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p31.3	NR	rs10889560-C	0.8891	2E-9		0.0376	[0.025-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1088	chr1	65991202	65991203	rs2767486	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.3	LEPR	rs2767486-A	0.797514	1E-18		0.0153659	[0.012-0.019] unit decrease	Affymetrix [12370749]	N
1088	chr1	65991202	65991203	rs2767486	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 8 months old	7,197 Norwegian ancestry individuals	3,966 Norwegian ancestry individuals	1p31.3	LEPR	rs2767486-G	0.16079	4E-15		0.142	[0.11-0.18] unit increase	Illumina [~ 8500000] (imputed)	N
1088	chr1	65991202	65991203	rs2767486	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 6 months old	8,017 Norwegian ancestry individuals	4,516 Norwegian ancestry individuals	1p31.3	LEPR	rs2767486-G	0.16079	2E-21		0.162	[0.13-0.2] unit increase	Illumina [~ 8500000] (imputed)	N
1088	chr1	65991202	65991203	rs2767486	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 3 months old	7,970 Norwegian ancestry individuals	4,454 Norwegian ancestry individuals	1p31.3	LEPR	rs2767486-G	0.16079	7E-14		0.128	[0.095-0.161] unit increase	Illumina [~ 8500000] (imputed)	N
1088	chr1	65991202	65991203	rs2767486	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1.5 years old	6,800 Norwegian ancestry individuals	3,780 Norwegian ancestry individuals	1p31.3	LEPR	rs2767486-G	0.16079	7E-15		0.145	[0.11-0.18] unit increase	Illumina [~ 8500000] (imputed)	N
1088	chr1	65991202	65991203	rs2767486	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1 year old	6,970 Norwegian ancestry individuals	3,839 Norwegian ancestry individuals	1p31.3	LEPR	rs2767486-G	0.16079	3E-20		0.169	[0.13-0.2] unit increase	Illumina [~ 8500000] (imputed)	N
1088	chr1	65992624	65992625	rs1751492	20167575	Sun Q	2010-02-22	Hum Mol Genet	Genome-wide association study identifies polymorphisms in LEPR as determinants of plasma soluble leptin receptor levels.	Soluble leptin receptor levels	684 European ancestry type 2 diabetes female cases, 820 European ancestry female controls	875 European ancestry male individuals	1p31.3	LEPR	rs1751492-C	0.30	6E-13	(Nurses Health Study)	7.6	[5.64-9.56] % decrease	Affymetrix [2543887] (imputed)	N
1088	chr1	65994564	65994565	rs7553258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p31.3	LEPR	rs7553258-T	0.257746	8E-12		0.017229818	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1088	chr1	66004807	66004808	rs11350038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs11350038-A	0.726143	6E-13		0.01842654	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr1	66007899	66007900	rs1782763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p31.3	LEPR	rs1782763-T	0.66889	2E-14		0.0231004	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr1	66013510	66013511	rs374372356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs374372356-G	0.551584	2E-9		0.014409566	[0.0097-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr1	66013847	66013848	rs9728077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p31.3	NR	rs9728077-A	0.66825	3E-30		0.022739	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1088	chr1	66017685	66017686	rs1782759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p31.3		rs1782759-T	NR	1E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1088	chr1	66018226	66018227	rs2767482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p31.3	LEPR	rs2767482-C	0.669024	3E-17		0.020622203	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr1	66040933	66040934	rs76912411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs76912411-A	NR	2E-48		0.0655	[0.057-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1088	chr1	66050532	66050533	rs116424768	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs116424768-C	0.987274	1E-12		0.0652923	[0.047-0.083] unit decrease	NR [NR]	N
1088	chr1	66050996	66050997	rs7535099	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p31.3	LEPR, RP11-430H12.2	rs7535099-G	0.2271815	3E-11	(EA, Leptin receptor)	0.3459	[0.25-0.45] unit increase	Affymetrix [509946]	N
1088	chr1	66053790	66053791	rs10789188	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p31.3	LEPR	rs10789188-A	0.33	1E-17		8.56	z-score increase	Affymetrix [4311822] (imputed)	N
1088	chr1	66058800	66058801	rs4655537	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p31.3	LEPR	rs4655537-A	0.3475855	7E-15	(Leptin receptor)	0.3502	[0.26-0.44] unit increase	Affymetrix [509946]	N
1089	chr1	66067395	66067396	rs17097193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs17097193-C	NR	2E-12		0.0468	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1089	chr1	66069780	66069781	rs72683129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p31.3	LEPR	rs72683129-G	0.148307	1E-20		0.031907693	[0.025-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr1	66069780	66069781	rs72683129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p31.3	LEPR	rs72683129-G	0.148304	4E-23		0.033878323	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr1	66069780	66069781	rs72683129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p31.3	LEPR	rs72683129-G	0.14831	8E-9		0.027065	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66069780	66069781	rs72683129	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p31.3	LEPR	rs72683129-A	0.85	2E-89		0.122	[0.11-0.13] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1089	chr1	66073360	66073361	rs4606347	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1p31.3	NR	rs4606347-?	NR	2E-12	(Leptin receptor)			Illumina [514227]	N
1089	chr1	66073835	66073835	rs11417022	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs11417022-G	0.609371	2E-8		0.0253977	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66073951	66073952	rs6664374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p31.3		rs6664374-T	NR	9E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1089	chr1	66073951	66073952	rs6664374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p31.3	LEPR	rs6664374-T	0.348395	6E-22		0.022789164	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66073951	66073952	rs6664374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p31.3	LEPR	rs6664374-T	0.348374	2E-10		0.01506903	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66073951	66073952	rs6664374	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.3	NR	rs6664374-T	0.34862	4E-12		0.013918	[0.01-0.0179] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1089	chr1	66073951	66073952	rs6664374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p31.3	LEPR	rs6664374-C	0.652777	2E-12		0.0140517	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1089	chr1	66077589	66077590	rs6690625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p31.3	LEPR	rs6690625-G	0.195771	4E-12		0.019311242	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr1	66077589	66077590	rs6690625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p31.3	NR	rs6690625-G	0.196688	4E-15		0.018081	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1089	chr1	66077623	66077624	rs6678033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p31.3	NR	rs6678033-A	0.367919	1E-102		0.042708	[0.039-0.047] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1089	chr1	66078404	66078405	rs6693842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs6693842-C	0.365773	4E-19		0.021150125	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66078404	66078405	rs6693842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p31.3	LEPR	rs6693842-C	0.365809	7E-14		0.017856037	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr1	66080259	66080260	rs61781308	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1p31.3	NR	rs61781308-?	NR	4E-138	(sLeptin R)			Illumina [~ 4000000] (imputed)	N
1089	chr1	66083693	66083694	rs150936702	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1p31.3		rs150936702-?	NR	1E-20		0.251231	[0.2-0.31] unit increase	NR [9800000] (imputed)	N
1089	chr1	66084180	66084181	rs4655739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p31.3		rs4655739-T	NR	2E-12		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1089	chr1	66085524	66085525	rs3790438	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	LEPR	rs3790438-A	0.175	3E-861	(Leptin receptor, LEPR.5400.52.3)	1.37	[1.33-1.41] unit decrease	Affymetrix [10572788] (imputed)	N
1089	chr1	66086193	66086194	rs10889569	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs10889569-?	NR	2E-21		0.07926523	[0.063-0.096] unit decrease	Illumina [30861016] (imputed)	N
1089	chr1	66086193	66086194	rs10889569	23844046	Dorajoo R	2013-07-02	PLoS One	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NA	1p31.3	LEPR	rs10889569-T	0.778	9E-9		0.05	[NR] unit increase	Illumina [up to 1745429] (imputed)	N
1089	chr1	66087828	66087829	rs6658330	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	LEPR	rs6658330-T	0.81203125	2E-654	(LEPR, 5400_52_3)	1.3749411	[1.34-1.41] unit increase	Illumina [> 1000000] (imputed)	N
1089	chr1	66088700	66088701	rs12067936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p31.3		rs12067936-A	NR	1E-57		0.0396	[0.035-0.045] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1089	chr1	66088700	66088701	rs12067936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p31.3		rs12067936-A	NR	7E-62		0.041	[0.036-0.046] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1089	chr1	66089781	66089782	rs6700896	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs6700896-?	NR	2E-25		0.08734646	[0.071-0.104] unit decrease	Illumina [30861016] (imputed)	N
1089	chr1	66089781	66089782	rs6700896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p31.3	LEPR	rs6700896-T	0.3795	4E-11		0.02393386	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66089781	66089782	rs6700896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p31.3	LEPR	rs6700896-T	0.3795	1E-15		0.0291606	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66089781	66089782	rs6700896	19567438	Elliott P	2009-07-01	JAMA	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals	13,615 European ancestry and Indian Asian ancestry Individuals	1p31.3	LEPR	rs6700896-T	NR	3E-14		14.8	[12.0-17.6] % decrease	Affymetrix, Illumina, Perlegen [~ 1400000] (imputed)	N
1089	chr1	66092569	66092570	rs11208691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p31.3	LEPR	rs11208691-G	0.371	8E-10		0.02270515	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66093029	66093030	rs7546242	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p31.3	LEPR	rs7546242-C	0.63034	4E-14		0.0153554	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1089	chr1	66099012	66099013	rs17415296	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p31.3	LEPR	rs17415296-A	0.1928499	4E-229	(Leptin receptor)	1.4	[1.34-1.46] unit decrease	Affymetrix [509946]	N
1089	chr1	66102256	66102257	rs1805096	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs1805096-?	NR	7E-25		0.08635496	[0.07-0.103] unit decrease	Illumina [30861016] (imputed)	N
1089	chr1	66102256	66102257	rs1805096	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1p31.3	LEPR	rs1805096-G	0.39	2E-183		0.104	[0.096-0.112] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1089	chr1	66102256	66102257	rs1805096	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1p31.3	LEPR	rs1805096-A	NR	2E-39	(men)	0.07	[NR] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1089	chr1	66102256	66102257	rs1805096	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1p31.3	LEPR	rs1805096-A	NR	2E-162	(women)	0.132	[NR] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1089	chr1	66102256	66102257	rs1805096	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	1p31.3	LEPR	rs1805096-A	0.451	2E-9	(HA women)	0.113	[0.064-0.162] unit decrease	Affymetrix [up to 2203609] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p31.3		rs1892534-T	NR	6E-15		0.0179	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs1892534-T	0.447339	4E-21				Affymetrix, Illumina [23472807] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs1892534-?	NR	2E-24		0.08532031	[0.069-0.102] unit decrease	Illumina [30861016] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p31.3	LEPR	rs1892534-T	0.3766	8E-36		0.04634622	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p31.3	LEPR	rs1892534-T	0.3767	4E-37		0.04711612	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	1p31.3	LEPR	rs1892534-T	0.38	4E-15		0.0073	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1089	chr1	66105943	66105944	rs1892534	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	1p31.3	LEPR	rs1892534-A	NR	7E-21		0.17	[NR] mg/dl decrease	Illumina [336108]	N
1089	chr1	66106447	66106448	rs370881286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p31.3		rs370881286-C	NR	3E-16		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1089	chr1	66107880	66107881	rs59508186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p31.3		rs59508186-C	0.613097	1E-8		0.0236925	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1089	chr1	66108516	66108517	rs2154384	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs2154384-C	0.630554	2E-732		0.120384	[0.12-0.12] unit increase	NR [NR]	N
1089	chr1	66109444	66109445	rs200241668	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p31.3	LEPR, PDE4B	rs200241668-?		4E-44		0.0968	[0.083-0.11] unit increase	Illumina [31500000] (imputed)	N
1089	chr1	66112527	66112528	rs12130672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p31.3		rs12130672-G	NR	1E-17		0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1089	chr1	66112675	66112676	rs12127241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p31.3		rs12127241-G	NR	2E-560		0.1263	[0.12-0.13] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1089	chr1	66117828	66117829	rs1938492	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1p31.3	LEPR	rs1938492-A	0.62	5E-14	(EA)	0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
1089	chr1	66118063	66118064	rs2186245	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	1p31.3		rs2186245-C	NR	2E-6		0.00678504	[0.004-0.0096] years increase	NR [7400000] (imputed)	N
1089	chr1	66118063	66118064	rs2186245	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	1p31.3		rs2186245-C	NR	7E-10		0.00710122	[0.0049-0.0093] years decrease	NR [7400000] (imputed)	N
1089	chr1	66118063	66118064	rs2186245	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1p31.3		rs2186245-C	NR	6E-22		0.040836	[0.033-0.049] years increase	NR [7400000] (imputed)	N
1089	chr1	66118329	66118332	rs140410685	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	1p31.3	LEPR, PDE4B	rs140410685-?	NR	1E-10		0.045	[0.032-0.059] unit increase	Illumina [12039491]	N
1089	chr1	66123135	66123136	rs13375019	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p31.3	LEPR	rs13375019-C	0.39	6E-133		0.104	[0.096-0.112] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1089	chr1	66123135	66123136	rs13375019	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p31.3	LEPR	rs13375019-C	0.39	1E-153	(BMI-adjusted)	0.105	[0.097-0.113] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1089	chr1	66123773	66123774	rs2376015	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		1p31.3	LEPR, PDE4B	rs2376015-?	NR	5E-12		0.0075	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1089	chr1	66124074	66124075	rs28480230	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	LEPR	rs28480230-T	0.362	5E-13	(C-reactive protein, CRP.4337.49.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1089	chr1	66127785	66127786	rs11805970	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	NR	rs11805970-G	0.092	1E-265	(Leptin receptor, LEPR.5400.52.3)	1.44	[1.36-1.52] unit decrease	Affymetrix [10572788] (imputed)	N
1089	chr1	66128238	66128239	rs6664626	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs6664626-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1089	chr1	66130397	66130398	rs4655772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs4655772-A	0.467967	3E-9		0.0245509	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66130397	66130398	rs4655772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs4655772-A	0.467967	6E-10		0.0257667	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66130397	66130398	rs4655772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs4655772-A	0.467967	2E-9		0.0251108	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66130397	66130398	rs4655772	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1p31.3		rs4655772-A	0.46797	2E-10		0.0264101	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66130397	66130398	rs4655772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs4655772-G	NR	8E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1089	chr1	66133442	66133443	rs11208700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p31.3	intergenic	rs11208700-A	0.469647	8E-11		0.014424953	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66133442	66133443	rs11208700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p31.3	NR	rs11208700-T	0.532139	1E-12		0.013813	[0.01-0.0176] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1089	chr1	66137188	66137189	rs34862421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p31.3		rs34862421-C	0.363606	3E-46		0.034921914	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3663	1E-34		0.0458313	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3663	6E-37		0.04744444	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3663	4E-37		0.04757809	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3664	1E-13		0.0276318	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3663	7E-37		0.04733785	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3664	3E-10		0.0234506	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137191	66137192	rs34293785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p31.3	intergenic	rs34293785-C	0.3664	7E-16		0.03005971	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr1	66137238	66137239	rs35945185	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	1p31.3	LEPR	rs35945185-A	0.365	2E-13		0.031	[0.023-0.039] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1089	chr1	66138092	66138093	rs183790625	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	NR	rs183790625-A	0.117	1E-285	(Leptin receptor, LEPR.5400.52.3)	1.32	[1.24-1.4] unit decrease	Affymetrix [10572788] (imputed)	N
1089	chr1	66138210	66138211	rs11208706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs11208706-T	0.630676	4E-8		0.0216275	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66138210	66138211	rs11208706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1p31.3		rs11208706-T	0.630676	4E-10		0.0251577	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66138210	66138211	rs11208706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p31.3		rs11208706-T	0.630676	1E-8		0.0223827	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66138210	66138211	rs11208706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p31.3		rs11208706-G	0.369651	3E-11		0.015852544	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr1	66141501	66141502	rs1938500	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p31.3	LEPR, PDE4B	rs1938500-T	0.19	9E-13		7.15	z-score increase	Affymetrix [4314223] (imputed)	N
1089	chr1	66141501	66141502	rs1938500	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p31.3	LEPR, PDE4B	rs1938500-T	0.19	3E-11		6.67	z-score increase	Affymetrix [4312306] (imputed)	N
1089	chr1	66142529	66142530	rs4655779	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1p31.3	LEPR	rs4655779-A	0.6512	4E-18		0.0903	[0.07-0.111] unit increase	Illumina [~ 200000]	N
1089	chr1	66142626	66142627	rs11208708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p31.3		rs11208708-C	NR	2E-19		0.0267	[0.021-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1089	chr1	66142626	66142627	rs11208708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p31.3		rs11208708-C	NR	3E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs4655783-T	0.468174	3E-8		0.0228167	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1p31.3		rs4655783-T	0.46819	2E-10		0.0247879	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs4655783-T	0.468174	2E-8		0.0231645	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs4655783-T	0.466674	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p31.3	NR	rs4655783-T	0.468547	2E-11		0.012937	[0.0092-0.0167] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1089	chr1	66143043	66143044	rs4655783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p31.3	NR	rs4655783-C	0.532769	2E-22		0.018533	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1089	chr1	66144875	66144876	rs10158937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs10158937-C	0.303983	8E-28				Affymetrix, Illumina [24246363] (imputed)	N
1089	chr1	66146245	66146246	rs12026918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p31.3		rs12026918-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1089	chr1	66148651	66148652	rs11208712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p31.3	NR	rs11208712-C	0.355596	2E-48		0.035654668	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p31.3		rs10889574-G	0.644	2E-40				Affymetrix [10369434] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p31.3		rs10889574-G	0.644	7E-9				Affymetrix [10369434] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p31.3		rs10889574-G	0.644	3E-13				Affymetrix [10369434] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	1p31.3		rs10889574-G	0.644	3E-12				Affymetrix [10369434] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p31.3		rs10889574-A	0.355559	7E-22		0.022141548	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs10889574-A	0.455637	2E-106				Affymetrix, Illumina [24649327] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p31.3	NR	rs10889574-A	0.356606	7E-106		0.043688	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs10889574-A	0.410983	5E-100				Affymetrix, Illumina [23114412] (imputed)	N
1089	chr1	66149340	66149341	rs10889574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.3		rs10889574-?	NR	6E-83				NR [~ 8900000] (imputed)	N
1089	chr1	66150509	66150510	rs55953331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p31.3		rs55953331-A	0.148317	4E-10		0.020398695	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66153362	66153363	rs4655582	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		1p31.3	LEPR, PDE4B	rs4655582-?	NR	5E-11		0.0069	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	4E-10		0.0247589	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	3E-9		0.0243547	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	3E-8		0.0225371	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	2E-9		0.0240623	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	7E-11		0.0255318	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p31.3		rs12022410-A	0.46779	1E-10		0.0252039	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	4E-9		0.0237714	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	2E-8		0.0230721	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1p31.3		rs12022410-A	0.46779	2E-10		0.0249373	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	1E-11		0.0275368	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p31.3		rs12022410-A	0.467773	3E-8		0.0227927	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66153932	66153933	rs12022410	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1p31.3	LEPR	rs12022410-A	0.4224	4E-12	(HIS)	0.0944	[0.068-0.121] unit increase	Illumina [~ 200000]	N
1089	chr1	66154562	66154563	rs112585178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs112585178-T	NR	3E-22		0.0658	[0.052-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr1	66159000	66159001	rs11208719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs11208719-G	0.308043	1E-34				Affymetrix, Illumina [20825802] (imputed)	N
1089	chr1	66159300	66159301	rs4655794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p31.3		rs4655794-C	0.531732	3E-9		0.013263568	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr1	66159410	66159410	rs11406772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p31.3	NR	rs11406772-I	0.193951	3E-11		0.017747	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1089	chr1	66160432	66160433	rs6588156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs6588156-G	0.687349	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
1089	chr1	66161460	66161461	rs4420065	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs4420065-?	NR	7E-22		0.08062254	[0.064-0.097] unit increase	Illumina [30861016] (imputed)	N
1089	chr1	66161460	66161461	rs4420065	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	1p31.3	LEPR	rs4420065-C	NR	4E-62		0.09	[0.08-0.10] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1089	chr1	66161697	66161698	rs6688625	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1p31.3	LEPR	rs6688625-?	NR	2E-15		0.0027	[0.0019-0.0035] unit increase	Affymetrix [21347608] (imputed)	N
1089	chr1	66161697	66161698	rs6688625	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1p31.3	LEPR	rs6688625-?	NR	2E-10		0.0035	[0.0023-0.0047] unit increase	Affymetrix [21347608] (imputed)	N
1089	chr1	66161697	66161698	rs6688625	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p31.3	LEPR	rs6688625-C	0.823499	7E-13		0.00369705	[0.0027-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1089	chr1	66161697	66161698	rs6688625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs6688625-T	0.23902	1E-13				Affymetrix, Illumina [24653286] (imputed)	N
1089	chr1	66163795	66163796	rs113467192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs113467192-T	NR	7E-20		0.0754	[0.059-0.092] unit increase	Affymetrix [9000000] (imputed)	N
1089	chr1	66164326	66164327	rs4459081	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1p31.3		rs4459081-G	0.350215	2E-14		0.0328253	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	2E-12		0.0216	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	7E-10		0.0198	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	2E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	9E-276		0.1088	[0.1-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	3E-19		0.0276	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr1	66165835	66165836	rs4394621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p31.3	NR	rs4394621-A	NR	3E-13		0.0224	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr1	66166933	66166934	rs11297295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p31.3		rs11297295-T	NR	1E-22		0.0239	[0.019-0.029] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1089	chr1	66169678	66169679	rs12753193	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1p31.3	NR	rs12753193-?	NR	2E-21		0.07945161	[0.063-0.096] unit increase	Illumina [30861016] (imputed)	N
1089	chr1	66169678	66169679	rs12753193	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	1p31.3	LEPR	rs12753193-G	0.45	4E-7	(CRP)	0.13	[-0.02-0.27] mmol/l decrease	Illumina [329091]	N
1089	chr1	66170361	66170362	rs17407594	25223902	Go MJ	2014-09-16	Genomics	A genome-wide association study identifies a LEPR gene as a novel predisposing factor for childhood fasting plasma glucose.	Fasting plasma glucose (childhood)	484 Korean ancestry children	776 Korean ancestry children	1p31.3	LEPR	rs17407594-A	NR	5E-8		0.157	[0.10-0.21] mmol/l increase	Illumina [747076]	N
1089	chr1	66171000	66171001	rs11208722	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	1p31.3	LEPR	rs11208722-A	NR	8E-36				NR [25015711] (imputed)	N
1089	chr1	66178917	66178918	rs7511672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p31.3	RN7SL854P	rs7511672-A	NR	4E-8		0.0154025	[0.0099-0.0209] unit increase	Affymetrix [319769] (imputed)	N
1089	chr1	66185457	66185458	rs12734159	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	1p31.3	intergenic	rs12734159-?	NR	3E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1089	chr1	66191074	66191075	rs4291477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs4291477-A	0.560423	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
1090	chr1	66194164	66194165	rs76962533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs76962533-T	NR	3E-26		0.067	[0.055-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1090	chr1	66224880	66224881	rs55675587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.3		rs55675587-T	0.1926	6E-9		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1090	chr1	66228850	66228851	rs17408658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs17408658-C	NR	3E-33		0.0308	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1090	chr1	66239486	66239487	rs11208742	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.3	Intergenic	rs11208742-T	0.1869	1E-9	(MTAG)	0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1090	chr1	66242006	66242007	rs116699695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs116699695-A	NR	8E-13		0.0599	[0.043-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1090	chr1	66250331	66250332	rs77120325	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs77120325-T	0.988509	8E-23		0.0952848	[0.076-0.114] unit decrease	NR [NR]	N
1090	chr1	66253976	66253977	rs114451718	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs114451718-T	0.986008	1E-28		0.108864	[0.09-0.128] unit decrease	NR [NR]	N
1090	chr1	66256126	66256127	rs116643857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs116643857-C	NR	2E-13		0.0583	[0.043-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1090	chr1	66256238	66256239	rs74085345	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs74085345-T	0.98805	7E-11		0.0661105	[0.046-0.086] unit increase	NR [NR]	N
1090	chr1	66267401	66267402	rs12142070	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.3	NR	rs12142070-T	0.583	3E-12		0.0076304	[0.0055-0.0098] unit decrease	NR [9732723] (imputed)	N
1090	chr1	66269935	66269936	rs11208757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.3	Intergenic	rs11208757-T	0.1846	3E-13	(MTAG)	0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1090	chr1	66269935	66269936	rs11208757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.3	Intergenic	rs11208757-T	0.1924	1E-11	(MTAG)	0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1090	chr1	66273289	66273290	rs10889584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p31.3	Intergenic	rs10889584-C	0.8156	4E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1090	chr1	66279124	66279125	rs4384209	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	1p31.3	PDE4B	rs4384209-G	NR	2E-6		0.126	[0.073-0.179] unit increase	Illumina [628922]	N
1090	chr1	66281594	66281595	rs78494072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs78494072-A	NR	5E-11		0.0498	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1090	chr1	66290023	66290024	rs34061534	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs34061534-C	0.985193	5E-22		0.085613	[0.068-0.103] unit decrease	NR [NR]	N
1090	chr1	66301121	66301122	rs146342974	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs146342974-C	0.984753	3E-25		0.0921179	[0.075-0.11] unit decrease	NR [NR]	N
1090	chr1	66304643	66304644	rs12760107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p31.3	NR	rs12760107-A	0.232	5E-9		0.0151801	[0.01-0.02] unit decrease	NR [9732723] (imputed)	N
1090	chr1	66310864	66310865	rs10493389	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	1p31.3	PDE4B	rs10493389-?	NR	7E-6	(LAD)			Affymetrix [70897]	N
1090	chr1	66312592	66312593	rs10493390	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.3	NR	rs10493390-?	NR	5E-11				Affymetrix [NR]	N
1090	chr1	66313993	66313994	rs4347184	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p31.3	PDE4B	rs4347184-T	NR	1E-7	(EA)	1.0598	[1.04-1.08]	Illumina [6627481] (imputed)	N
1090	chr1	66313993	66313994	rs4347184	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p31.3	PDE4B	rs4347184-T	NR	1E-7		1.051	[1.03-1.07]	Illumina [6627481] (imputed)	N
1090	chr1	66313993	66313994	rs4347184	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p31.3	intergenic	rs4347184-T	NR	2E-7		1.049	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1091	chr1	66322768	66322769	rs564109448	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.3	NR	rs564109448-?	NR	4E-6		4.591	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1091	chr1	66324511	66324512	rs12129719	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.3	NR	rs12129719-A	NR	1E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1091	chr1	66329486	66329487	rs147138325	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	1p31.3	NR	rs147138325-T		1E-5		0.596	[0.33-0.86] unit decrease	Illumina [12759548] (imputed)	N
1091	chr1	66329486	66329487	rs147138325	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	1p31.3	NR	rs147138325-T		4E-6		0.5471	[0.32-0.78] unit decrease	Illumina [12764477] (imputed)	N
1091	chr1	66332053	66332054	rs17128076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs17128076-A	NR	9E-14		0.046	[0.034-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr1	66332654	66332655	rs2801578	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p31.3	PDE4B	rs2801578-?		3E-8				NR [6786993] (imputed)	N
1091	chr1	66332654	66332655	rs2801578	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p31.3	NR	rs2801578-?	NR	2E-10		1.06184	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1091	chr1	66356624	66356625	rs115273594	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs115273594-G	0.981806	3E-20		0.0767055	[0.06-0.093] unit increase	NR [NR]	N
1091	chr1	66357674	66357675	rs4353064	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1p31.3		rs4353064-C	0.2032	8E-6		0.037793	[0.021-0.054] unit increase	Affymetrix [15580782] (imputed)	N
1091	chr1	66358241	66358242	rs1937447	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.3	NR	rs1937447-G	0.2407	2E-8		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1091	chr1	66364650	66364651	rs12064884	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	1p31.3	NR	rs12064884-A	0.5	5E-9		1.03		NR [8546065] (imputed)	N
1091	chr1	66387486	66387487	rs17451403	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	1p31.3	NR	rs17451403-A	NR	8E-6		0.01324	[0.0074-0.0191] unit increase	Illumina [541614]	N
1091	chr1	66389096	66389097	rs4655809	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs4655809-?	NR	2E-8				NR [NR]	N
1091	chr1	66390807	66390808	rs4655591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.3		rs4655591-T	NR	7E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1091	chr1	66392404	66392405	rs2310752	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2310752-?	NR	4E-10				NR [NR]	N
1091	chr1	66392404	66392405	rs2310752	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	1p31.3	PDE4B	rs2310752-A	0.43	3E-12		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1091	chr1	66392404	66392405	rs2310752	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p31.3	PDE4B	rs2310752-A	0.4303	2E-13		0.014862391	[0.011-0.019] unit decrease	Affymetrix [11514654] (imputed)	N
1091	chr1	66392404	66392405	rs2310752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p31.3		rs2310752-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1091	chr1	66393731	66393732	rs2997084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p31.3	NR	rs2997084-G	0.433	9E-13		0.00955653	[0.0069-0.0122] unit decrease	NR [~ 9732723] (imputed)	N
1091	chr1	66393731	66393732	rs2997084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.3	NA	rs2997084-C	0.5637	1E-11		0.0131	[0.0094-0.0168] unit increase	NR [~ 27400000] (imputed)	N
1091	chr1	66397343	66397344	rs72685056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs72685056-A	NR	3E-44		0.0506	[0.044-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr1	66399894	66399895	rs4255357	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs4255357-?	NR	4E-8				NR [NR]	N
1091	chr1	66399894	66399895	rs4255357	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p31.3	PDE4B	rs4255357-G		6E-11		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
1091	chr1	66401439	66401440	rs11585651	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs11585651-?	NR	3E-9				NR [NR]	N
1091	chr1	66403091	66403092	rs2310754	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2310754-?	NR	4E-8				NR [NR]	N
1091	chr1	66406806	66406807	rs4503327	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs4503327-?	NR	3E-9				NR [NR]	N
1091	chr1	66407351	66407352	rs7528604	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7528604-?	NR	2E-10				NR [NR]	N
1091	chr1	66407351	66407352	rs7528604	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Anxiety and stress-related disorders	12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7528604-?	NR	5E-11		0.89021	[0.86-0.92]	NR [NR]	N
1091	chr1	66407351	66407352	rs7528604	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.3		rs7528604-G	0.558	7E-18		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p31.3		rs7528604-G	0.566	6E-12		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Stress-related disorders	9,831 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	6E-9				Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety disorders	4,584 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	3E-7				Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders (psychiatric co-morbidity weighting design)	10,311 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	1E-11		1.14	[1.10-1.18]	Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders (psychiatric co-morbidity covariate model)	12,096 European ancestry cases, 42,215 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	2E-8		1.11	[1.08-1.15]	Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders (including obsessive-compulsive disorder)	13,533 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	1E-10				Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders (excluding co-morbid schizophrenia)	11,560 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	4E-10		1.12	[1.10-1.16]	Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders (excluding adjustment disorder)	8,517 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-?	NR	2E-11				Illumina [8933939] (imputed)	N
1091	chr1	66407351	66407352	rs7528604	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3	PDE4B	rs7528604-G	NR	5E-11		1.1235955	[1.09-1.16]	Illumina [8933939] (imputed)	N
1091	chr1	66407699	66407700	rs12088813	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1p31.3	NR	rs12088813-C	0.267	2E-8		0.009329047	[0.0061-0.0126] unit decrease	NR [~ 10000000] (imputed)	N
1091	chr1	66407768	66407769	rs61799395	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1p31.3	PDE4B	rs61799395-C	0.2202	1E-9		0.01880294	[0.013-0.025] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1091	chr1	66408010	66408011	rs4554696	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs4554696-?	NR	2E-9				NR [NR]	N
1091	chr1	66408010	66408011	rs4554696	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	1p31.3		rs4554696-C	NR	6E-9		1.1748121	[1.07-1.28]	Illumina [11601089] (imputed)	N
1091	chr1	66410108	66410109	rs11208774	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.3	Intergenic	rs11208774-T	0.536	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr1	66410540	66410541	rs11208775	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs11208775-?	NR	5E-8				NR [NR]	N
1091	chr1	66411399	66411400	rs3009872	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs3009872-?	NR	7E-10				NR [NR]	N
1091	chr1	66412759	66412760	rs7527901	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7527901-?	NR	3E-9				NR [NR]	N
1091	chr1	66412759	66412760	rs7527901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.3		rs7527901-T	NR	1E-13		0.0125	[0.0092-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1091	chr1	66413730	66413731	rs7531270	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7531270-?	NR	2E-8				NR [NR]	N
1091	chr1	66414439	66414440	rs6680334	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6680334-?	NR	9E-9				NR [NR]	N
1091	chr1	66415480	66415481	rs10889590	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs10889590-?	NR	5E-9				NR [NR]	N
1091	chr1	66416308	66416309	rs1937458	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937458-?	NR	5E-9				NR [NR]	N
1091	chr1	66416746	66416747	rs1937456	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937456-?	NR	7E-9				NR [NR]	N
1091	chr1	66416938	66416939	rs1937455	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937455-?	NR	5E-9				NR [NR]	N
1091	chr1	66416938	66416939	rs1937455	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1p31.3	PDE4B	rs1937455-G	0.3	1E-9		0.0146	[0.0093-0.0199] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1091	chr1	66419086	66419087	rs7547416	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7547416-?	NR	5E-9				NR [NR]	N
1091	chr1	66419086	66419087	rs7547416	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	1p31.3	NR	rs7547416-A	0.5637	8E-12		0.014121004	[0.01-0.018] unit increase	Affymetrix [10613246] (imputed)	N
1091	chr1	66419086	66419087	rs7547416	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1p31.3	NR	rs7547416-A	0.562	3E-9		0.010312716	[0.0069-0.0137] unit increase	Affymetrix [NR] (imputed)	N
1091	chr1	66419141	66419142	rs2997088	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2997088-?	NR	6E-9				NR [NR]	N
1091	chr1	66419904	66419905	rs6421482	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6421482-?	NR	2E-9				NR [NR]	N
1091	chr1	66419904	66419905	rs6421482	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	1p31.3	PDE4B	rs6421482-A	0.4363	3E-10		6.315	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1091	chr1	66419904	66419905	rs6421482	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.3	NR	rs6421482-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1091	chr1	66426099	66426100	rs10789205	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs10789205-?	NR	6E-9				NR [NR]	N
1091	chr1	66426349	66426350	rs4638095	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs4638095-?	NR	6E-9				NR [NR]	N
1091	chr1	66428501	66428502	rs12743648	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	1p31.3	NR	rs12743648-T	0.2342	5E-9		5.836	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1091	chr1	66428568	66428569	rs12062815	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs12062815-?	NR	5E-9				NR [NR]	N
1091	chr1	66428787	66428788	rs12062901	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs12062901-?	NR	5E-9				NR [NR]	N
1091	chr1	66432912	66432913	rs7513141	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs7513141-?	NR	5E-9				NR [NR]	N
1091	chr1	66434742	66434743	rs7519259	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p31.3		rs7519259-A	0.53	7E-10				NR [NR] (imputed)	N
1091	chr1	66434742	66434743	rs7519259	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p31.3		rs7519259-A	0.53	4E-12		0.01	% increase	NR [NR] (imputed)	N
1091	chr1	66434742	66434743	rs7519259	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.3	PDE4B	rs7519259-G	0.471527	3E-11		0.00914331	[0.0064-0.0118] unit decrease	Affymetrix [12370749]	N
1091	chr1	66434742	66434743	rs7519259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.3		rs7519259-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1091	chr1	66435734	66435735	rs76516194	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs76516194-A	0.962983	1E-17		0.0469513	[0.036-0.058] unit increase	NR [NR]	N
1091	chr1	66435841	66435842	rs2186123	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2186123-?	NR	3E-9				NR [NR]	N
1091	chr1	66437770	66437771	rs1937440	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937440-?	NR	4E-9				NR [NR]	N
1091	chr1	66438654	66438655	rs2503207	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503207-?	NR	4E-9				NR [NR]	N
1091	chr1	66439290	66439291	rs1937438	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937438-?	NR	5E-9				NR [NR]	N
1091	chr1	66439922	66439923	rs1937437	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937437-?	NR	4E-9				NR [NR]	N
1091	chr1	66441328	66441329	rs1937436	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p31.3	PDE4B	rs1937436-G	0.709705	1E-8		0.016095	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1091	chr1	66441794	66441795	rs1937434	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs1937434-?	NR	6E-9				NR [NR]	N
1091	chr1	66442024	66442025	rs2503201	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503201-?	NR	6E-9				NR [NR]	N
1091	chr1	66442337	66442338	rs10889591	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs10889591-?	NR	6E-9				NR [NR]	N
1091	chr1	66444016	66444017	rs2503199	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503199-?	NR	6E-9				NR [NR]	N
1091	chr1	66444648	66444649	rs2503197	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503197-?	NR	6E-9				NR [NR]	N
1091	chr1	66445857	66445858	rs6684069	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6684069-?	NR	6E-9				NR [NR]	N
1091	chr1	66447393	66447394	rs6690398	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6690398-?	NR	9E-9				NR [NR]	N
1091	chr1	66447393	66447394	rs6690398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.3	NA	rs6690398-A	0.5501	2E-13		0.0125	[0.0092-0.0158] unit increase	NR [~ 27400000] (imputed)	N
1091	chr1	66447522	66447523	rs2503196	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503196-?	NR	5E-9				NR [NR]	N
1091	chr1	66448694	66448695	rs2489918	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2489918-?	NR	1E-8				NR [NR]	N
1092	chr1	66469033	66469034	rs10889592	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1p31.3		rs10889592-T	0.074465	7E-7		0.063098	[0.038-0.088] unit increase	Affymetrix [15580782] (imputed)	N
1092	chr1	66469642	66469643	rs1937443	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.3	NR	rs1937443-G	0.563	5E-23		0.0107674	[0.0086-0.0129] unit increase	NR [9732723] (imputed)	N
1092	chr1	66469642	66469643	rs1937443	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.3	NR	rs1937443-G	0.563	2E-15		0.02043622	[0.015-0.025] unit increase	NR [~ 10000000] (imputed)	N
1092	chr1	66470205	66470206	rs2186122	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	1p31.3	PDE4B	rs2186122-T	NR	5E-9		1.024		NR [14661600] (imputed)	N
1092	chr1	66470205	66470206	rs2186122	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1p31.3	PDE4B	rs2186122-T	0.561	4E-11		0.0152	[0.011-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1092	chr1	66476436	66476437	rs61796569	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	1p31.3	NR	rs61796569-T	NR	4E-9		0.828	unit increase	Affymetrix [14661600] (imputed)	N
1092	chr1	66478839	66478840	rs1937450	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	1p31.3	PDE4B, U4	rs1937450-G	NR	1E-8		1.0328273	[1.02-1.04]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1092	chr1	66481187	66481188	rs1392816	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p31.3	PDE4B	rs1392816-C	0.612534	6E-16		0.0170144	[0.013-0.021] unit decrease	NR [16516521] (imputed)	N
1092	chr1	66481187	66481188	rs1392816	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p31.3	NR	rs1392816-T	0.38	2E-13		0.0118095	[0.0087-0.0149] unit decrease	NR [9732723] (imputed)	N
1092	chr1	66481187	66481188	rs1392816	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p31.3	NR	rs1392816-T	0.378	3E-11		0.0100538	[0.0071-0.013] unit increase	NR [9732723] (imputed)	N
1092	chr1	66481187	66481188	rs1392816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.3		rs1392816-T	0.3831	2E-8		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr1	66481187	66481188	rs1392816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.3	Intergenic	rs1392816-T	0.3831	5E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr1	66481639	66481640	rs72667426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs72667426-G	NR	2E-10		0.0488	[0.034-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1092	chr1	66493533	66493534	rs9659943	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs9659943-?	NR	4E-8				NR [NR]	N
1092	chr1	66501426	66501427	rs144314390	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs144314390-A	0.989202	9E-16		0.0850072	[0.064-0.106] unit decrease	NR [NR]	N
1092	chr1	66502676	66502677	rs2503221	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs2503221-?	NR	2E-8				NR [NR]	N
1092	chr1	66506648	66506649	rs146328487	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1p31.3	PDE4B	rs146328487-C	0.99	2E-6		9.7	[5.74-13.66] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1092	chr1	66516654	66516655	rs114669363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs114669363-A	NR	1E-12		0.0653	[0.047-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1092	chr1	66519662	66519663	rs80255322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs80255322-G	NR	4E-28		0.0707	[0.058-0.083] unit increase	Affymetrix [9000000] (imputed)	N
1092	chr1	66519662	66519663	rs80255322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p31.3		rs80255322-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1092	chr1	66520997	66520998	rs2455012	24847357	Ye Z	2014-05-09	Front Genet	Genome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections.	Staphylococcus aureus infection	309 European ancestry cases, 2,925 European ancestry controls	NA	1p31.3	PDE4B	rs2455012-T	0.04519	7E-7		2.17	[1.59-2.93]	Illumina [508921]	N
1092	chr1	66536011	66536012	rs72667460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.3		rs72667460-T	0.0539	2E-10		0.0197	[0.014-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1092	chr1	66539455	66539456	rs1392817	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	1p31.3		rs1392817-A	0.4773	2E-8		0.01403	[0.0091-0.0189] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1092	chr1	66539455	66539456	rs1392817	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.3	NR	rs1392817-?	NR	1E-9				Affymetrix [NR]	N
1092	chr1	66546883	66546884	rs6661750	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	1p31.3		rs6661750-G	NR	5E-7		1.1432	[1.04-1.25]	Illumina [11601089] (imputed)	N
1092	chr1	66550452	66550453	rs11810110	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p31.3	NR	rs11810110-?		3E-11		0.0153853	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1092	chr1	66551758	66551759	rs7522014	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.3	PDE4B	rs7522014-A	0.672558	9E-10		0.00930705	[0.0063-0.0123] unit increase	Affymetrix [12370749]	N
1092	chr1	66552708	66552709	rs6694912	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6694912-?	NR	2E-8				NR [NR]	N
1092	chr1	66552708	66552709	rs6694912	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Anxiety and stress-related disorders	12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.3		rs6694912-?	NR	5E-9		1.11149	[1.08-1.15]	NR [NR]	N
1092	chr1	66553606	66553607	rs2937268	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	1p31.3	NR	rs2937268-C	0.0623	3E-6		27.933	[27.5-28.36]	Illumina [10000612] (imputed)	N
1093	chr1	66594825	66594826	rs143668036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs143668036-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1093	chr1	66617552	66617553	rs72679119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs72679119-G	NR	1E-23		0.0357	[0.029-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1093	chr1	66635370	66635371	rs2069278	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p31.3	PDE4B	rs2069278-T	0.6791	3E-9		0.0576	[0.039-0.077] unit increase	NR [9744772] (imputed)	N
1093	chr1	66670803	66670804	rs572144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p31.3	NR	rs572144-C	NR	5E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix [9000000] (imputed)	N
1093	chr1	66689108	66689109	rs17423910	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	1p31.3	PDE4B	rs17423910-G	0.17	6E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1093	chr1	66690703	66690704	rs1338721	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs1338721-A	0.46929	2E-12		0.0134881	[0.0097-0.0172] unit decrease	NR [NR]	N
1093	chr1	66712121	66712122	rs17424885	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.3	NR	rs17424885-?	NR	2E-6				Affymetrix [NR]	N
1094	chr1	66727249	66727250	rs77080086	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	1p31.3	PDE4B, LOC101927139, LOC105378776	rs77080086-T	0.02468	4E-7		11.07	[6.81-15.33] unit increase	Illumina [up to 4929806] (imputed)	N
1094	chr1	66738622	66738623	rs505237	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p31.3	NR	rs505237-G	0.616031	4E-8		0.0157305	[0.01-0.021] unit increase	Affymetrix [16580851] (imputed)	N
1094	chr1	66738960	66738961	rs180826669	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p31.3	PDE4B	rs180826669-T	NR	6E-6		1.39051	[0.79-1.99] unit increase	Illumina [at least 950000] (imputed)	N
1094	chr1	66754532	66754533	rs566267	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p31.3	PDE4B	rs566267-G	NR	4E-6		1.0527	NR	Affymetrix, Illumina [8278136] (imputed)	N
1094	chr1	66762465	66762466	rs546784	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1p31.3	PDE4B	rs546784-A	0.457	9E-6		1.4	[1.20-1.62]	Affymetrix [444044]	N
1094	chr1	66769099	66769100	rs6683977	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1p31.3	PDE4B	rs6683977-C	0.449	5E-6		1.41	[1.22-1.64]	Affymetrix [444044]	N
1095	chr1	66851146	66851147	rs11208844	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p31.3		rs11208844-A	0.1379	3E-8		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1095	chr1	66851146	66851147	rs11208844	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p31.3	PDE4B, SGIP1	rs11208844-G	0.8592	5E-9		1.0294245		Affymetrix [11880941] (imputed)	N
1095	chr1	66853484	66853485	rs12128881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs12128881-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1095	chr1	66888541	66888542	rs1308048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1p31.3		rs1308048-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1095	chr1	66888541	66888542	rs1308048	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	1p31.3	PDE4B	rs1308048-C	NR	2E-14		0.067	[0.02-0.114] unit decrease	Affymetrix [8351141] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	9E-15	(74 ms)	0.0530177	[0.04-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	9E-14	(118 ms)	0.0492037	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	9E-13	(130 ms)	0.0486178	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	8E-11	(320 ms)	0.0442536	[0.031-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	7E-17	(98 ms)	0.0570114	[0.044-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	7E-15	(92 ms)	0.0529258	[0.04-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	7E-15	(136 ms)	0.0511871	[0.038-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	7E-10	(338 ms)	0.0416117	[0.028-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-9	(306 ms)	0.0387635	[0.025-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-16	(110 ms)	0.0548014	[0.042-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-15	(114 ms)	0.0525612	[0.039-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-12	(140 ms)	0.0462056	[0.033-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-11	(334 ms)	0.0438765	[0.03-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-11	(328 ms)	0.0440527	[0.031-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	6E-11	(314 ms)	0.0439172	[0.031-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-9	(344 ms)	0.039439	[0.026-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-9	(308 ms)	0.0389469	[0.026-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-19	(100 ms)	0.0608121	[0.048-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-16	(112 ms)	0.0548976	[0.042-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-14	(138 ms)	0.0497622	[0.037-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-12	(54 ms)	0.0470388	[0.034-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-10	(322 ms)	0.0422938	[0.029-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	5E-10	(146 ms)	0.0414054	[0.028-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-8	(304 ms)	0.0366674	[0.023-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-13	(120 ms)	0.0485721	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-12	(66 ms)	0.0474693	[0.034-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-11	(342 ms)	0.0441855	[0.031-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-11	(318 ms)	0.0448421	[0.031-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	4E-10	(312 ms)	0.0417441	[0.028-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	3E-9	(150 ms)	0.0407322	[0.028-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	3E-8	(48 ms)	0.0377652	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	3E-14	(88 ms)	0.0513382	[0.038-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	3E-11	(340 ms)	0.0445114	[0.031-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	3E-10	(52 ms)	0.0428719	[0.03-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-9	(152 ms)	0.0409193	[0.028-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-8	(50 ms)	0.0385179	[0.025-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-8	(154 ms)	0.0379357	[0.025-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-14	(94 ms)	0.0517132	[0.038-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-14	(134 ms)	0.050749	[0.038-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-13	(132 ms)	0.0500706	[0.037-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-12	(64 ms)	0.0477655	[0.034-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-12	(62 ms)	0.0480716	[0.035-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-12	(60 ms)	0.0484406	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-12	(56 ms)	0.0481511	[0.035-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-12	(332 ms)	0.0469372	[0.034-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	2E-11	(128 ms)	0.046281	[0.033-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-9	(336 ms)	0.0410561	[0.028-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-9	(148 ms)	0.0402982	[0.027-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-8	(46 ms)	0.0386178	[0.025-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-8	(310 ms)	0.0383826	[0.025-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-16	(80 ms)	0.0566258	[0.043-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-16	(78 ms)	0.0566133	[0.043-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(96 ms)	0.0522012	[0.039-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(90 ms)	0.0523183	[0.039-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(86 ms)	0.05213	[0.039-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(84 ms)	0.0525671	[0.039-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(82 ms)	0.0531276	[0.04-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(76 ms)	0.0525644	[0.039-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(72 ms)	0.0534438	[0.04-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(116 ms)	0.0508627	[0.038-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-14	(108 ms)	0.0526791	[0.039-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-12	(70 ms)	0.0485287	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-12	(58 ms)	0.0482124	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-11	(68 ms)	0.0467669	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-11	(330 ms)	0.0455726	[0.032-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-11	(326 ms)	0.04563	[0.032-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-10	(324 ms)	0.0437212	[0.03-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-10	(316 ms)	0.0435417	[0.03-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-10	(144 ms)	0.0427517	[0.03-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984571	66984572	rs72677052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72677052-G	0.783924	1E-10	(142 ms)	0.0430425	[0.03-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1096	chr1	66984583	66984584	rs7549881	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs7549881-G	0.478645	2E-11		0.013629	[0.0097-0.0176] unit decrease	NR [NR]	N
1096	chr1	66991345	66991346	rs10789207	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	1p31.3		rs10789207-T	0.78	2E-14		0.054	[0.04-0.068] unit decrease	Affymetrix [NR]	N
1096	chr1	66991345	66991346	rs10789207	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p31.3	SGIP1	rs10789207-T	0.786	8E-18		0.054	[0.042-0.066] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1096	chr1	66991345	66991346	rs10789207	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p31.3	SGIP1	rs10789207-T	0.785	3E-20	(men)	0.083	[0.065-0.101] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1096	chr1	66991345	66991346	rs10789207	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1p31.3	NR	rs10789207-C	0.22	2E-8		0.29	[0.19-0.39] unit decrease	Affymetrix [19941912] (imputed)	N
1096	chr1	67003478	67003479	rs6690186	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.3	NR	rs6690186-C	0.129666424180128	3E-8		0.01022804	[0.0066-0.0139] unit increase	NR [NR]	N
1096	chr1	67007388	67007389	rs12136922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p31.3		rs12136922-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1096	chr1	67008494	67008495	rs7547570	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p31.3	SGIP1	rs7547570-A	0.3986	5E-10		0.168	[0.12-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1096	chr1	67010103	67010104	rs7553325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p31.3		rs7553325-T	NR	6E-11		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1096	chr1	67010103	67010104	rs7553325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p31.3		rs7553325-T	NR	3E-8		0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1096	chr1	67010103	67010104	rs7553325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p31.3		rs7553325-T	NR	2E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1096	chr1	67010103	67010104	rs7553325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs7553325-T	NR	7E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1096	chr1	67010653	67010654	rs4655617	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p31.3	NR	rs4655617-C	0.4343	2E-9		0.0277	[0.019-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1096	chr1	67010653	67010654	rs4655617	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p31.3	NR	rs4655617-C	0.4786	2E-10		0.0256	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1096	chr1	67011985	67011986	rs6662771	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1p31.3	SGIP1	rs6662771-?		3E-8				Illumina [563980]	N
1096	chr1	67018727	67018728	rs6662330	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p31.3	SGIP1	rs6662330-T	0.218	1E-9		0.1426	[0.096-0.189] mmHg increase	Affymetrix [NR] (imputed)	N
1096	chr1	67020439	67020440	rs984409	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p31.3	NR	rs984409-?		4E-11		0.0148683	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1096	chr1	67020439	67020440	rs984409	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p31.3	NR	rs984409-?		9E-10		0.0140927	[0.0096-0.0186] unit decrease	Affymetrix [19400418] (imputed)	N
1096	chr1	67025960	67025961	rs10889628	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	1p31.3		rs10889628-G	NR	9E-6		0.3883	unit increase	Illumina [NR] (imputed)	N
1096	chr1	67028480	67028481	rs3795530	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.3		rs3795530-G	0.695	1E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1096	chr1	67046125	67046126	rs1867631	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	1p31.3	SGIP1	rs1867631-A	0.2892	5E-6		0.1071	[0.060-0.154] years decrease	NR [NR]	N
1096	chr1	67050143	67050144	rs10127497	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.3	NR	rs10127497-T	0.1382	1E-8		0.0097	[0.0064-0.013] unit increase	NR [7666894] (imputed)	N
1096	chr1	67071355	67071356	rs20354	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p31.3	SGIP1	rs20354--T	0.1331	5E-14		0.1907	[0.14-0.24] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1096	chr1	67075311	67075312	rs11208920	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	1p31.3	SGIP1	rs11208920-A	0.4328	8E-11		0.014787062	[0.01-0.019] unit decrease	Affymetrix [11514463] (imputed)	N
1096	chr1	67086110	67086111	rs7532173	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	1p31.3	NR	rs7532173-A	0.43	8E-8		0.02	[0.01-0.03] unit increase	NR [9704453]	N
1096	chr1	67086110	67086111	rs7532173	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	1p31.3	NR	rs7532173-A	0.43	2E-8		0.02	[0.012-0.028] unit increase	NR [9704453]	N
1096	chr1	67094287	67094288	rs72669450	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.3	SGIP1	rs72669450-G	0.1833	2E-8		0.014739082	[0.0096-0.0199] unit increase	Affymetrix [up to 18485882] (imputed)	N
1096	chr1	67100088	67100089	rs12760606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs12760606-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1096	chr1	67100088	67100089	rs12760606	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs12760606-?	NR	4E-18		0.020032	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1096	chr1	67101104	67101105	rs7546149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p31.3		rs7546149-G	NR	6E-11		0.0231	[0.016-0.03] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1096	chr1	67106824	67106825	rs12031054	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	SGIP1	rs12031054-G	0.710514	6E-16		0.0163985	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
1097	chr1	67123056	67123057	rs6681460	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	1p31.3	SGIP1	rs6681460-?	0.3755	7E-6	(ACL)	1.827	[NR]	Affymetrix [906600]	N
1097	chr1	67145846	67145847	rs6588216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.3		rs6588216-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1097	chr1	67146816	67146817	rs10789214	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p31.3	NR	rs10789214-T	0.5661	4E-10		1.014	[1.009-1.018]	NR [8098588] (imputed)	N
1097	chr1	67195775	67195776	rs115745439	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.3	SGIP1	rs115745439-?		8E-6				Illumina [4322238] (imputed)	N
1097	chr1	67198419	67198419	rs150404620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p31.3		rs150404620-CT	NR	4E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1097	chr1	67199155	67199156	rs6679379	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.3	NR	rs6679379-T	0.2875	3E-8		0.0072	[0.0047-0.0097] unit increase	NR [7666894] (imputed)	N
1097	chr1	67208621	67208622	rs17440885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.3		rs17440885-A	0.9352	2E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1098	chr1	67261619	67261620	rs72922085	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	1p31.3	NR	rs72922085-G	NR	4E-7		1.63	NR	Illumina [6470615] (imputed)	N
1098	chr1	67267079	67267080	rs17495511	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	INSL5	rs17495511-C	0.7221875	4E-7	(INSL5, 10462_14_3)	0.14196452	[0.087-0.197] unit decrease	Illumina [> 1000000] (imputed)	N
1098	chr1	67267241	67267242	rs17442592	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	1p31.3	NR	rs17442592-?	0.08701	2E-6		0.201679	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1098	chr1	67365033	67365034	rs1925408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p31.3	WDR78	rs1925408-T	0.735034	1E-17		0.021498606	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr1	67365088	67365089	rs1925409	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p31.3	NR	rs1925409-?	NR	6E-7		0.0087593	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1099	chr1	67373557	67373558	rs3008892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs3008892-?	NR	6E-26				NR [~ 8900000] (imputed)	N
1099	chr1	67374968	67374968	rs143570368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p31.3	NR	rs143570368-TACACACACAC	0.645942	2E-8		0.00477505	[0.003-0.0065] unit increase	Affymetrix [16582909] (imputed)	N
1099	chr1	67374968	67374968	rs143570368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p31.3	NR	rs143570368-TACACACACAC	0.645942	8E-9		0.00552509	[0.0036-0.0075] unit increase	Affymetrix [16582965] (imputed)	N
1099	chr1	67390415	67390416	rs3008858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.3	NR	rs3008858-C	NR	6E-26		0.0286	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr1	67390415	67390416	rs3008858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p31.3	NR	rs3008858-C	NR	2E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr1	67390415	67390416	rs3008858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p31.3	NR	rs3008858-C	NR	9E-18		0.0233	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr1	67390415	67390416	rs3008858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p31.3	NR	rs3008858-C	NR	3E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr1	67390467	67390468	rs1886686	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p31.3		rs1886686-C	0.2671	2E-9		0.15516302	[0.1-0.21] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1099	chr1	67416526	67416528	rs35686197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p31.3		rs35686197-A	NR	4E-17		0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1099	chr1	67418026	67418027	rs3008870	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p31.3	MIER1	rs3008870-T	0.7279	3E-13		0.02917854	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1099	chr1	67422989	67422990	rs2025609	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.3	MIER1	rs2025609-C	0.1489	2E-12		0.0186	[0.014-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1099	chr1	67441672	67441672	rs201428899	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	1p31.3	SLC35D1, MIER1	rs201428899-?	NR	5E-6		1.0309278	[1.02-1.04]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1099	chr1	67446770	67446770	rs58842463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p31.3	MIER1	rs58842463-TTAGA	0.349383	4E-16		0.018830994	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr1	67446770	67446770	rs58842463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p31.3	NR	rs58842463-I	0.349317	6E-18		0.018213	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1099	chr1	67449461	67449462	rs4581250	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p31.3		rs4581250-A	0.65	7E-12				Affymetrix [10369434] (imputed)	N
1099	chr1	67451921	67451922	rs12117131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p31.3		rs12117131-T	NR	3E-26		0.0257	[0.021-0.03] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1099	chr1	67451923	67451924	rs12132068	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1p31.3		rs12132068-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1099	chr1	67451923	67451924	rs12132068	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p31.3		rs12132068-G	0.737	4E-19				Affymetrix [10369434] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs2755253-C	0.29	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p31.3		rs2755253-T	NR	4E-32		0.029	[0.024-0.034] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p31.3		rs2755253-C	0.292	7E-27				Affymetrix [10369434] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p31.3	SLC35D1	rs2755253-T	0.707437	3E-12		0.01689599	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs2755253-T	0.732376	6E-50				Affymetrix, Illumina [23472807] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p31.3	NR	rs2755253-T	0.70898	3E-50		0.030903	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1099	chr1	67470842	67470843	rs2755253	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.3	SLC35D1	rs2755253-C	0.291714	2E-8		0.008712	[0.0057-0.0117] unit increase	Affymetrix [12370749]	N
1099	chr1	67470842	67470843	rs2755253	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p31.3	SLC35D1, WDR78	rs2755253-C	0.297943	5E-8		0.015336	[0.0098-0.0209] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1099	chr1	67471691	67471692	rs2755256	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p31.3	SLC35D1	rs2755256-A	0.2278	3E-16		0.0071	[0.0053-0.0089] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1099	chr1	67480843	67480845	rs140508453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p31.3		rs140508453-T	NR	1E-12		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1099	chr1	67480843	67480845	rs140508453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p31.3		rs140508453-T	NR	6E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1099	chr1	67480843	67480845	rs140508453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p31.3	SLC35D1	rs140508453-T	0.721827	1E-16		0.02052522	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1099	chr1	67480843	67480845	rs140508453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p31.3	SLC35D1	rs140508453-T	0.721865	4E-42		0.03374962	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1099	chr1	67480843	67480845	rs140508453	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p31.3	SLC35D1	rs140508453-T	0.7213	1E-18		0.03567004	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1099	chr1	67481351	67481352	rs143113754	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p31.3	SLC35D1	rs143113754-A	NR	1E-7		1.03895	[0.66-1.42] unit increase	Illumina [NR] (imputed)	N
1099	chr1	67487375	67487376	rs61780038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs61780038-A	0.623084	1E-15				Affymetrix, Illumina [24649327] (imputed)	N
1099	chr1	67487375	67487376	rs61780038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.3		rs61780038-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1099	chr1	67487375	67487376	rs61780038	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p31.3	NR	rs61780038-?	NR	3E-7		0.0089881	[0.0055-0.0124] unit increase	Affymetrix [805426] (imputed)	N
1099	chr1	67487400	67487401	rs11576753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p31.3		rs11576753-C	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1099	chr1	67489169	67489171	rs145445141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p31.3	SLC35D1	rs145445141-A	0.7896	7E-11		0.02867173	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1099	chr1	67493777	67493778	rs2815358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs2815358-C	0.683496	6E-15				Affymetrix, Illumina [23467995] (imputed)	N
1100	chr1	67507386	67507387	rs2815374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p31.3		rs2815374-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1100	chr1	67508530	67508531	rs2815376	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1p31.3	SLC35D1	rs2815376-A	0.597973349631066	4E-6		0.002543	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1100	chr1	67508887	67508887	rs199919594	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1p31.3	NR	rs199919594-?	NR	4E-6		0.191075	[0.11-0.27] unit increase	NR [13958389] (imputed)	N
1100	chr1	67520139	67520140	rs2025087	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Ventral thalamic nuclei volume	30,114 white British ancestry individuals			SLC35D1	rs2025087-T	0.2666	2E-10		0.059543	[0.041-0.078] unit increase	Affymetrix [8165723] (imputed)	N
1100	chr1	67561089	67561090	rs72933970	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1p31.3	Clorf141	rs72933970-?		1E-8		1.16	1.09-1.21	Illumina [87827]	N
1100	chr1	67597118	67597119	rs3762318	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	NR	rs3762318-A	0.847	2E-14	(Interleukin-23 receptor, IL23R.5088.175.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1100	chr1	67597118	67597119	rs3762318	22019778	Zhang F	2011-10-23	Nat Genet	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls	3,301 Han Chinese ancestry cases, 5,299 Han Chinese ancestry controls	1p31.3	IL23R	rs3762318-A	0.10	3E-11		1.45	[1.30-1.61]	NR [1701673] (imputed)	N
1100	chr1	67597976	67597977	rs2024825	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	1p31.3	IL23R	rs2024825-A	0.895	4E-33		1.5873016	[NR]	Illumina [4577171] (imputed)	N
1100	chr1	67600100	67600101	rs12069782	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	1p31.3	IL23R	rs12069782-C	NR	3E-10	(EA)	1.24	[1.16-1.33]	Illumina [128705]	N
1100	chr1	67600100	67600101	rs12069782	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p31.3	NR	rs12069782-?	NR	3E-7				Affymetrix [5486770] (imputed)	N
1100	chr1	67600685	67600686	rs12044149	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	1p31.3	IL23R, C1orf141	rs12044149-T	NR	3E-12		1.296	NR	Illumina [11532644] (imputed)	N
1100	chr1	67601066	67601067	rs143577520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	1p31.3		rs143577520-C	NR	1E-10		0.7298	[0.51-0.95] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
1100	chr1	67601114	67601115	rs10489631	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		C1orf141	rs10489631-?	NR	9E-6	(female)	0.158172	[NR] unit increase	Affymetrix [NR] (imputed)	N
1100	chr1	67611612	67611613	rs4655683	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	1p31.3	NR	rs4655683-?	NR	8E-7		4.94	[NR] z-score increase	Illumina [1387382] (imputed)	N
1100	chr1	67627259	67627260	rs12041056	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	1p31.3	C1orf141	rs12041056-?	NR	9E-6				Illumina [5729117] (imputed)	N
1100	chr1	67627827	67627828	rs117633859	32826979	Meguro A	2020-08-21	Commun Biol	Genetic control of CCL24, POR, and IL23R contributes to the pathogenesis of sarcoidosis.	Sarcoidosis	685 Japanese ancestry cases, 847 Japanese ancestry controls	907 Japanese ancestry cases, 252 European ancestry cases, 1,042 Japanese ancestry controls, 256 European ancestry controls	1p31.3	IL23R	rs117633859-G	NR	2E-12		1.87	[1.57-2.23]	Illumina [530466] (imputed)	N
1100	chr1	67627827	67627828	rs117633859	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	1p31.3	C1orf141, IL23R	rs117633859-G	0.095	3E-21		1.82	[1.60-2.05]	Affymetrix, Illumina [2208258] (imputed)	N
1101	chr1	67633811	67633812	rs1884444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL23R	5,365 Icelandic ancestry individuals	NA	1p31.3		rs1884444-G	0.4785	1E-11		0.129116	[0.092-0.166] unit increase	Illumina [7506463] (imputed)	N
1101	chr1	67635949	67635950	rs2295359	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1p31.3	IL23R	rs2295359-A	0.344	8E-8	(EA, conditional on rs12564022)	1.15	[1.09-1.21]	Illumina [up to 4778154] (imputed)	N
1101	chr1	67636899	67636900	rs1358748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	1p31.3	NR	rs1358748-?	NR	6E-6		0.1544	[0.086-0.223] unit increase	Illumina [at least 560000] (imputed)	N
1101	chr1	67648595	67648596	rs76418789	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	1p31.3	IL23R	rs76418789-?	NR	4E-7		1.1363636	[1.08-1.19]	NR [7424691] (imputed)	N
1101	chr1	67648595	67648596	rs76418789	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	1p31.3	IL23R	rs76418789-?	NR	9E-11		1.9607843	[1.59-2.38]	NR [4760823] (imputed)	N
1101	chr1	67648595	67648596	rs76418789	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	1p31.3	IL23R	rs76418789-?	0.923	7E-7		2.3255813	NR	NR [4335144] (imputed)	N
1101	chr1	67648595	67648596	rs76418789	26398853	Ye BD	2016-01-01	Inflamm Bowel Dis	Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans.	Ulcerative colitis	705 Korean ancestry cases, 1,178 Korean ancestry controls	980 Korean ancestry cases, 2,694 Korean ancestry controls	1p31.3	IL23R	rs76418789-G	0.93	1E-8		1.75		Illumina [536821] (imputed)	N
1101	chr1	67648595	67648596	rs76418789	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	1p31.3	IL23R	rs76418789-G	0.931	2E-10		2.06	[1.64-2.58]	Illumina [5664371] (imputed)	N
1101	chr1	67655894	67655895	rs6664119	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.3	C1orf141	rs6664119-?	NR	8E-6	(creatine)	0.14978866	[0.084-0.216] unit increase	Affymetrix [at least 2500000] (imputed)	N
1101	chr1	67667935	67667936	rs1977160	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	1p31.3		rs1977160-?	NR	1E-17		0.052	NR unit decrease	NR [6490614] (imputed)	N
1101	chr1	67669633	67669634	rs11580078	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1p31.3	IL23R	rs11580078-G	0.43	8E-11				Illumina [7347414] (imputed)	N
1101	chr1	67670754	67670755	rs12564022	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1p31.3	IL23R	rs12564022-T	0.275	2E-9	(EA)	1.17	[1.11-1.23]	Illumina [up to 4778154] (imputed)	N
1101	chr1	67671377	67671378	rs56698321	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	1p31.3		rs56698321-A	NR	3E-8		5.49	[3.0-10.04]	Affymetrix [NR] (imputed)	N
1101	chr1	67675515	67675516	rs11805303	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	1p31.3	IL23R	rs11805303-T	0.32	6E-12		1.39	[1.22-1.58]	Affymetrix [469557]	N
1101	chr1	67681668	67681669	rs7517847	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	1p31.3		rs7517847-?	NR	5E-43		0.11	NR unit decrease	NR [5890016] (imputed)	N
1101	chr1	67681668	67681669	rs7517847	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p31.3	IL23R	rs7517847-?	NR	1E-98	(subset analysis)			Illumina [130052]	N
1101	chr1	67681668	67681669	rs7517847	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.3	NR	rs7517847-A	0.56	1E-159	(EA)	1.3990791	[1.37-1.42]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1101	chr1	67681668	67681669	rs7517847	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	1p31.3	IL23R	rs7517847-T	0.578	4E-6		0.19	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1101	chr1	67681668	67681669	rs7517847	17435756	Rioux JD	2007-04-15	Nat Genet	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 cases, 977 controls	530 trios, 353 cases, 207 controls	1p31.3	IL23R	rs7517847-?	0.40	3E-12				Illumina [304413]	N
1101	chr1	67688348	67688349	rs10489629	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.3	NR	rs10489629-?	NR	5E-7				Affymetrix [NR]	N
1101	chr1	67694201	67694202	rs2201841	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1p31.3	IL23R	rs2201841-C	NR	1E-13		1.16	[NR]	Illumina [266047]	N
1101	chr1	67694201	67694202	rs2201841	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	1p31.3	IL23R	rs2201841-G	0.30	3E-8		1.13	[NR]	Perlegen [~ 2500000] (imputed)	N
1101	chr1	67699914	67699915	rs79755370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1p31.3		rs79755370-A	NR	2E-11		0.3098	[0.22-0.4] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
1101	chr1	67699914	67699915	rs79755370	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	1p31.3	IL23R	rs79755370-C	0.96	1E-8		1.8	[1.45-2.23]	Illumina [at least 106525] (imputed)	N
1101	chr1	67702525	67702526	rs11465804	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	1p31.3	IL23R	rs11465804-?	NR	1E-6		1.89	[1.47-2.44]	Illumina [304825]	N
1101	chr1	67702525	67702526	rs11465804	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1p31.3	IL23R	rs11465804-T	0.93	7E-63		2.5	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1101	chr1	67703441	67703442	rs183686347	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p31.3	IL23R	rs183686347-?	NR	6E-14	(subset analysis)			Illumina [130052]	N
1101	chr1	67705957	67705958	rs11209026	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	1p31.3		rs11209026-?	NR	3E-13		0.062	NR unit decrease	NR [5896510] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p31.3	IL23R, C1orf141, AL109843.1, RNU4ATAC4P, RP11-131O15.2	rs11209026-A	0.062249	3E-16	(EA, Interleukin-23 receptor)	0.7416	[0.57-0.92] unit decrease	Affymetrix [509946]	N
1101	chr1	67705957	67705958	rs11209026	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	1p31.3	IL23R	rs11209026-?	NR	2E-6	(Adult)	3.0934768	[1.89-5]	Illumina [2612357]	N
1101	chr1	67705957	67705958	rs11209026	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	1p31.3	IL23R	rs11209026-?	NR	2E-6		2.169659	[1.56-3.03]	Illumina [2612357]	N
1101	chr1	67705957	67705958	rs11209026	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p31.3	IL23R	rs11209026-?	NR	2E-10	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1101	chr1	67705957	67705958	rs11209026	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1p31.3	IL23R	rs11209026-G	0.934	6E-28	(EA)	1.65		Illumina [128935]	N
1101	chr1	67705957	67705958	rs11209026	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1p31.3	IL23R	rs11209026-G	0.934	2E-27		1.62		Illumina [128935]	N
1101	chr1	67705957	67705958	rs11209026	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p31.3	IL12RB2, IL23R	rs11209026-G	0.933	8E-161		2.013	[1.885-2.15]	Affymetrix, Illumina [1230000] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	1p31.3	IL23R	rs11209026-G	NR	4E-14		2.84	[NR]	Illumina [508934]	N
1101	chr1	67705957	67705958	rs11209026	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	1p31.3	IL12RB2, C1orf141, SERBP1, SLC35D1, IL23R	rs11209026-G	0.921	1E-18		2.2	[2.10-2.35]	Affymetrix, Illumina [1060934] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	22293688	Huang J	2012-02-01	Eur J Hum Genet	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Crohn's disease	16,179 European ancestry individuals	NA	1p31.3	IL23R	rs11209026-?	NR	4E-21		3.18	[2.91-3.44]	NR [6233112] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	1p31.3	IL23R	rs11209026-G	0.93	2E-17				Illumina [2223620] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1p31.3	IL23R	rs11209026-G	0.94	5E-28		1.74	[1.57-1.92]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1p31.3	IL23R	rs11209026-G	0.932	1E-64		2.66	[2.36-3.00]	Affymetrix, Illumina [953241] (imputed)	N
1101	chr1	67705957	67705958	rs11209026	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1p31.3	IL23R	rs11209026-?	NR	7E-7		1.49	[1.27-1.74]	Illumina [535475]	N
1101	chr1	67705957	67705958	rs11209026	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	1p31.3	IL23R	rs11209026-?	0.94	9E-14		1.89	[1.56-2.27]	Illumina [288662]	N
1101	chr1	67705957	67705958	rs11209026	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1p31.3	IL23R	rs11209026-?	NR	3E-10				Affymetrix [NR]	N
1101	chr1	67705957	67705958	rs11209026	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	1p31.3	IL23R	rs11209026-?	0.93	1E-8		1.79		Illumina [280748]	N
1101	chr1	67705957	67705958	rs11209026	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	1p31.3	IL23R	rs11209026-?	0.94	7E-11		2.56	[1.92-3.45]	Illumina [NR]	N
1101	chr1	67705957	67705958	rs11209026	17447842	Libioulle C	2007-03-05	PLoS Genet	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	1p31.3	IL23R	rs11209026-?	0.92	2E-18		2.92	[NR]	Illumina [302451]	N
1101	chr1	67707689	67707690	rs11581607	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1p31.3	NR	rs11581607-G	0.93	2E-24		1.51	[NR]	NR [8546065] (imputed)	N
1101	chr1	67707689	67707690	rs11581607	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	IL23R	rs11581607-A	0.067	1E-17	(Interleukin-23 receptor, IL23R.5088.175.3)	0.42	[0.32-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1101	chr1	67707689	67707690	rs11581607	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p31.3	INSL5, MIER1, IL12RB2, TCTEX1D1, WDR78, SLC35D1, C1orf141, IL23R, SERBP1, SGIP1	rs11581607-?		4E-41				Illumina [9578670] (imputed)	N
1101	chr1	67707689	67707690	rs11581607	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1p31.3	INSL5, MIER1, IL12RB2, TCTEX1D1, WDR78, SLC35D1, C1orf141, IL23R, SERBP1, SGIP1	rs11581607-?		5E-111				Illumina [9725440] (imputed)	N
1101	chr1	67707689	67707690	rs11581607	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1p31.3	MIER1, INSL5, IL12RB2, TCTEX1D1, WDR78, SLC35D1, C1orf141, IL23R, SERBP1, SGIP1	rs11581607-?		6E-93				Illumina [9560910] (imputed)	N
1101	chr1	67708154	67708155	rs80174646	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p31.3	IL23R	rs80174646-?	NR	1E-143	(subset analysis)			Illumina [130052]	N
1101	chr1	67708154	67708155	rs80174646	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.3	NR	rs80174646-C	0.93	4E-62	(EA)	1.614317		Affymetrix, Illumina [~ 9000000] (imputed)	N
1101	chr1	67708356	67708357	rs12743974	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	1p31.3	IL23R, C1ORF141, IL12RB2	rs12743974-?	NR	5E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
1101	chr1	67713345	67713346	rs113935720	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs113935720-T		2E-15		1.19		NR [8016731] (imputed)	N
1101	chr1	67713345	67713346	rs113935720	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs113935720-T	NR	4E-13		1.18	NR	NR [8016731] (imputed)	N
1101	chr1	67722566	67722567	rs10889676	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p31.3	IL23R	rs10889676-?	NR	2E-24	(subset analysis)			Illumina [130052]	N
1101	chr1	67725119	67725120	rs10889677	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls		IL23R	rs10889677-A	0.30	1E-8		1.29		Illumina [280748]	N
1101	chr1	67726103	67726104	rs9988642	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	1p31.3	IL23R	rs9988642-T	NR	7E-14		1.4	NR	Illumina [up to 11532644] (imputed)	N
1101	chr1	67726103	67726104	rs9988642	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	1p31.3	IL23R	rs9988642-T	0.929	1E-26		1.52		Illumina [111236] (imputed)	N
1101	chr1	67731367	67731368	rs7547569	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.3	NR	rs7547569-?	NR	2E-170	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1101	chr1	67731613	67731614	rs6682413	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	1p31.3	IL23R, IL12RB2	rs6682413-?	NR	8E-7	(Recessive)	2.0876827	[NR]	Illumina [15200000] (imputed)	N
1101	chr1	67735359	67735360	rs111379368	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	IL23R	rs111379368-T	0.941875	6E-12	(IL23R, 5088_175_3)	0.3622136	[0.26-0.47] unit increase	Illumina [> 1000000] (imputed)	N
1101	chr1	67739027	67739028	rs6588252	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	1p31.3	IL23R, IL12RB2	rs6588252-?	NR	9E-7	(Recessive)		[NR]	Illumina [15200000] (imputed)	N
1101	chr1	67743551	67743552	rs113155999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL23R	5,365 Icelandic ancestry individuals	NA	1p31.3		rs113155999-C	0.05941	2E-19		0.356563	[0.28-0.43] unit decrease	Illumina [7506463] (imputed)	N
1101	chr1	67744600	67744601	rs6660226	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	1p31.3		rs6660226-A	0.453	2E-6		0.7		Illumina [5411567] (imputed)	N
1101	chr1	67744600	67744601	rs6660226	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	1p31.3		rs6660226-A	0.453	9E-6		0.6		Illumina [5411261] (imputed)	N
1101	chr1	67744600	67744601	rs6660226	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	1p31.3	IL23R	rs6660226-A	NR	1E-10		0.7904		Illumina [up to 1244428] (imputed)	N
1101	chr1	67747414	67747415	rs12119179	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1p31.3	retro-DNAJB6	rs12119179-?	NR	6E-13	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1101	chr1	67747435	67747436	rs12141575	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1p31.3	IL23R	rs12141575-A	NR	2E-6	(PWY-6215_4-chlorobenzoate_degradation)	4.768668	Z-score increase	Illumina [8100000] (imputed)	N
1101	chr1	67747435	67747436	rs12141575	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1p31.3	IL23R	rs12141575-A	0.33	9E-11	(conditioned on rs11209026, EA)	1.15		Illumina [128935]	N
1101	chr1	67753507	67753508	rs1495965	20622879	Mizuki N	2010-07-11	Nat Genet	Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Behcet's disease susceptibility loci.	Behcet's disease	611 Japanese ancestry cases, 737 Japanese ancestry controls	119 Korean ancestry cases, 140 Korean ancestry controls, 1,215 Turkish cases, 1,279 Turkish controls	1p31.3	IL12RB2, IL23R	rs1495965-G	0.51	2E-11		1.35	[1.24-1.47]	Affymetrix [320438]	N
1101	chr1	67760139	67760140	rs924080	20622878	Remmers EF	2010-07-11	Nat Genet	Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behcet's disease.	Behcet's disease	1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	Up to 111 Turkish ancestry cases, 225 Turkish ancestry controls, 189 Middle Eastern Arab ancestry cases, 163 Middle Eastern Arab ancestry controls, 227 European ancestry cases, 203 European ancestry controls, 688 East Asian ancestry cases, 791 East Asian ancestry controls	1p31.3	IL12RB2, IL23R	rs924080-?	NR	7E-9		1.28	[1.18-1.39]	Illumina [311459]	N
1102	chr1	67787714	67787715	rs2201584	32868391	Leng RX	2020-08-31	Ann Rheum Dis	Identification of new susceptibility loci associated with rheumatoid arthritis.	Rheumatoid arthritis	5,900 East Asian cases, 20,521 East Asian controls, 14,361 European ancestry cases, 43,923 European ancestry controls	NA	1p31.3	IL12RB2	rs2201584-G		8E-10		1.1	[1.07-1.13]	Illumina [NR] (imputed)	N
1102	chr1	67787714	67787715	rs2201584	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	1p31.3	IL12RB2	rs2201584-?	NR	1E-6	(EA)			Illumina [126270]	N
1102	chr1	67790299	67790300	rs150855560	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1p31.3		rs150855560-C	NR	6E-7		0.561441	[0.34-0.78] unit increase	NR [5275424] (imputed)	N
1102	chr1	67790597	67790598	rs17129789	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	1p31.3	IL12RB2	rs17129789-C	0.18	9E-20		1.52	[1.39-1.67]	Illumina [507467]	N
1102	chr1	67793170	67793171	rs10489626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p31.3		rs10489626-G	NR	9E-10		0.0746	[0.051-0.099] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1102	chr1	67793170	67793171	rs10489626	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p31.3	IL12RB2	rs10489626-G	0.163317	8E-10		0.0755789	[0.051-0.1] unit increase	Affymetrix [7288503] (imputed)	N
1102	chr1	67793170	67793171	rs10489626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p31.3		rs10489626-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1102	chr1	67798444	67798445	rs72678531	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	1p31.3	II12RB2	rs72678531-G	0.17	2E-38		1.61	[1.49-1.73]	Illumina [237619] (imputed)	N
1102	chr1	67798444	67798445	rs72678531	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	1p31.3	NR	rs72678531-C		3E-23		1.68	[1.51-1.86]	Illumina [109812]	N
1102	chr1	67799169	67799170	rs10889681	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1p31.3	IL12RB2	rs10889681-?	NR	1E-6		1.15	[1.09-1.21]	Illumina [at least 5000000] (imputed)	N
1102	chr1	67800553	67800554	rs12139687	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12RB2	5,362 Icelandic ancestry individuals	NA	1p31.3		rs12139687-G	0.4288	3E-16		0.154284	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1102	chr1	67800952	67800953	rs4655701	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.3	IL12RB2	rs4655701-T	0.4415625	4E-10	(IL12RB2, 3815_14_1)	0.15653555	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1102	chr1	67802370	67802371	rs6659932	32024964	Gonzalez-Serna D	2020-02-05	Sci Rep	A cross-disease meta-GWAS identifies four new susceptibility loci shared between systemic sclerosis and Crohn's disease.	Crohn's disease or systemic sclerosis	2,281 European ancestry systemic sclerosis cases, 1,988 European ancestry Crohn's disease cases, 7,388 European ancestry controls	3,453 European ancestry systemic sclerosis cases, 2,600 European ancestry Crohn's disease cases, 7,180 European ancestry controls	1p31.3	IL12RB2	rs6659932-A		1E-11			[NR]	Illumina [5994231] (imputed)	N
1102	chr1	67802370	67802371	rs6659932	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1p31.3	IL12RB2	rs6659932-?	NR	6E-11		1.1764705	[1.1-0.01]	Illumina [6450125] (imputed)	N
1102	chr1	67806431	67806432	rs1874791	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1p31.3	IL12RB2	rs1874791-A		3E-7		1.14	[1.09-1.20]	Illumina [644674]	N
1102	chr1	67806431	67806432	rs1874791	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1p31.3	IL12RB2	rs1874791-A	0.18	3E-7		1.18	[1.10-1.26]	Illumina [~ 2100000] (imputed)	N
1102	chr1	67814439	67814440	rs3790566	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	1p31.3	IL12RB2	rs3790566-T	0.24	4E-10		1.16		Illumina [4723365]	N
1102	chr1	67820193	67820194	rs6679356	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1p31.3		rs6679356-C	NR	5E-65		0.439101	[0.39-0.49] unit increase	NR [2787054] (imputed)	N
1102	chr1	67820193	67820194	rs6679356	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1p31.3		rs6679356-C	NR	7E-63		0.439362	[0.39-0.49] unit increase	NR [5054572] (imputed)	N
1102	chr1	67820193	67820194	rs6679356	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	1p31.3	IL12RB2, SERBP1	rs6679356-C	0.21	7E-28		1.52	NR	Illumina [1143634] (imputed)	N
1102	chr1	67822376	67822377	rs3790567	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	1p31.3	IL12RB2	rs3790567-A	0.232	8E-12		1.48	[NR]	Illumina [276459]	N
1102	chr1	67822376	67822377	rs3790567	19458352	Hirschfield GM	2009-05-20	N Engl J Med	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cholangitis	505 European ancestry cases, 1,507 European ancestry controls	526 European ancestry cases, 1,206 European ancestry controls	1p31.3	IL12RB2	rs3790567-A	0.24	3E-11		1.51	[1.33-1.70]	Illumina [305724]	N
1102	chr1	67825398	67825399	rs6702599	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p31.3	IL12RB2	rs6702599-C	NR	2E-8		0.821	[0.75-0.89]	NR [NR] (imputed)	N
1102	chr1	67825398	67825399	rs6702599	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p31.3	IL12RB2	rs6702599-C	NR	3E-9		0.84	[0.78-0.9]	Illumina [NR] (imputed)	N
1102	chr1	67839572	67839573	rs3828069	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p31.3	IL12RB2	rs3828069-?	NR	2E-9		1.1764705	[1.11-1.27]	Illumina [at least 5000000] (imputed)	N
1102	chr1	67857521	67857522	rs17097330	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p31.3	IL12RB2	rs17097330-G	NR	1E-7		1.01366	[0.64-1.39] unit increase	Illumina [NR] (imputed)	N
1102	chr1	67889570	67889571	rs12566098	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p31.3	IL12RB2	rs12566098-G	0.688	6E-22	(Interleukin-12 receptor subunit beta-2, IL12RB2.3815.14.1)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1103	chr1	67941166	67941167	rs1977785	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	1p31.3	SERBP1	rs1977785-A	0.368	3E-7		0.1	unit increase	Illumina [5510858] (imputed)	N
1103	chr1	67965792	67965793	rs4655719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs4655719-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1103	chr1	67984970	67984971	rs148442247	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	1p31.3	NR	rs148442247-T	NR	6E-6		0.325	[0.18-0.47] unit increase	Illumina [6319684] (imputed)	N
1103	chr1	67992598	67992599	rs12089923	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1p31.3	SERBP1	rs12089923-C	NR	2E-6		0.093610585	[0.055-0.132] unit increase	Affymetrix [9576485] (imputed)	N
1104	chr1	68039604	68039605	rs17508759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p31.3	NR	rs17508759-T	NR	2E-11		0.0392	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1104	chr1	68047518	68047519	rs12140485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p31.3		rs12140485-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1104	chr1	68051136	68051137	rs787540	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p31.3	GADD45A	rs787540-A	0.66	8E-16		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1104	chr1	68051229	68051230	rs787541	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1p31.3	GADD45A	rs787541-C	0.34253199999999995	2E-8		0.017744	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1104	chr1	68051229	68051230	rs787541	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1p31.3	U6, GADD45A	rs787541-C		4E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1104	chr1	68051229	68051230	rs787541	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1p31.3	U6, GADD45A	rs787541-C		2E-6	(EA)	0.022	[0.012-0.032] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1104	chr1	68054774	68054775	rs114700498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p31.3		rs114700498-T	NR	6E-11		0.0343	[0.024-0.044] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1104	chr1	68054774	68054775	rs114700498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p31.3		rs114700498-T	0.051745	8E-12		0.034737054	[0.025-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1104	chr1	68054774	68054775	rs114700498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p31.3		rs114700498-T	0.051739	3E-12		0.035338633	[0.025-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1104	chr1	68056313	68056314	rs12142474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p31.3	NR	rs12142474-G	0.086122	3E-10		0.021647	[0.015-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1104	chr1	68056313	68056314	rs12142474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs12142474-G	0.0840159	4E-10				Affymetrix, Illumina [23467995] (imputed)	N
1104	chr1	68060983	68060984	rs72681000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p31.3	NR	rs72681000-C	0.085989	2E-11		0.023328	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1104	chr1	68062147	68062148	rs12120849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p31.3		rs12120849-T	NR	4E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1104	chr1	68064136	68064136	rs555018269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.3	NR	rs555018269-I	0.052204	2E-14		0.034681	[0.026-0.044] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1104	chr1	68080064	68080065	rs78584627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p31.3	NR	rs78584627-T	NR	5E-9		0.0316	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1104	chr1	68084554	68084555	rs72682840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs72682840-T	0.0553686	9E-11				Affymetrix, Illumina [24588908] (imputed)	N
1104	chr1	68088438	68088439	rs787488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p31.3		rs787488-G	NR	3E-9		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1104	chr1	68088438	68088439	rs787488	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.3	NR	rs787488-A	0.726994	8E-11		0.0144965	[0.01-0.019] unit increase	NR [NR]	N
1104	chr1	68095046	68095047	rs56370400	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p31.3	RN7SL392P	rs56370400-T	NR	4E-7		1.04809	[0.65-1.45] unit increase	Illumina [NR] (imputed)	N
1104	chr1	68105452	68105453	rs344924	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	1p31.3	intergenic	rs344924-?	NR	3E-7	(Recessive model)	4.9	[2.70-9.0]	Affymetrix [334127]	N
1104	chr1	68126095	68126096	rs182943	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	1p31.3	SERBP1, GADD45A	rs182943-?	NR	7E-6				Affymetrix [753382]	N
1104	chr1	68152387	68152388	rs681673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1p31.3		rs681673-C	0.561092	1E-9		0.0219791	[0.015-0.029] unit increase	Illumina [13476266] (imputed)	N
1104	chr1	68152387	68152388	rs681673	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1p31.3	GADD45A	rs681673-?	NR	8E-9		0.02454	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1104	chr1	68152437	68152438	rs532446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p31.3	NR	rs532446-C	0.289879	1E-12		0.015025	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1104	chr1	68154085	68154086	rs607375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p31.3	GADD45A	rs607375-C	0.704054	2E-13		0.017699832	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1104	chr1	68154692	68154693	rs685724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p31.3	GADD45A	rs685724-C	0.703877	2E-10		0.015626146	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1104	chr1	68154692	68154693	rs685724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p31.3	NR	rs685724-C	0.702361	5E-17		0.016932	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1105	chr1	68159265	68159266	rs56399962	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	1p31.3	NR	rs56399962-?	NR	3E-8	(Quadrant III (Mandible), Segment 6)	0.016569866	NR unit decrease	NR [7417619] (imputed)	N
1105	chr1	68159265	68159266	rs56399962	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	1p31.3	NR	rs56399962-?	NR	2E-8	(Quadrant I (Philtrum), Segment 4)	0.02034032	NR unit decrease	NR [7417619] (imputed)	N
1105	chr1	68161788	68161789	rs511041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1p31.3		rs511041-C	0.519386	2E-8		0.0203571	[0.013-0.027] unit increase	Illumina [13476299] (imputed)	N
1105	chr1	68161788	68161789	rs511041	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs511041-C	0.601665	3E-15				Affymetrix, Illumina [24332387] (imputed)	N
1105	chr1	68161788	68161789	rs511041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p31.3		rs511041-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1105	chr1	68165685	68165686	rs3962383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p31.3		rs3962383-T	NR	1E-28		0.0235	[0.019-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1105	chr1	68165685	68165686	rs3962383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs3962383-C	0.296457	5E-11				Affymetrix, Illumina [17210439] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p31.3		rs3962382-C	NR	1E-29		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs3962382-C	0.679601	1E-42				Affymetrix, Illumina [24246363] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p31.3	NR	rs3962382-C	0.705233	2E-38		0.025782	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs3962382-C	0.677795	2E-44				Affymetrix, Illumina [20825802] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p31.3	NR	rs3962382-C	0.705922	4E-42		0.028743	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p31.3	GNG12	rs3962382-C	0.7047	2E-9		0.02323328	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1105	chr1	68165692	68165693	rs3962382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p31.3	GNG12	rs3962382-C	0.7048	3E-10		0.02456591	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1105	chr1	68166424	68166425	rs12029562	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p31.3	GNG12	rs12029562-A	0.525060517083836	2E-10		0.0295	[0.021-0.038] SD decrease	Illumina [22400000] (imputed)	N
1105	chr1	68166747	68166748	rs474384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p31.3	GNG12	rs474384-G	0.716446	3E-16		0.020113844	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1105	chr1	68166747	68166748	rs474384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p31.3	GNG12	rs474384-G	0.716421	2E-31		0.0273643	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1105	chr1	68166747	68166748	rs474384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs474384-A	0.286177	7E-16				Affymetrix, Illumina [22063850] (imputed)	N
1105	chr1	68166747	68166748	rs474384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p31.3	NR	rs474384-A	0.284621	7E-18		0.017993	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1105	chr1	68172339	68172343	rs145563085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p31.3	GNG12	rs145563085-C	0.624256	7E-10		0.014261466	[0.0097-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1105	chr1	68194150	68194151	rs2803462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p31.3	GNG12	rs2803462-A	0.704743	4E-36		0.030367533	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1105	chr1	68195132	68195133	rs3753366	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	1p31.3	Intergenic	rs3753366-?		1E-6		1.326	[NR]	Affymetrix [492217] (imputed)	N
1105	chr1	68197670	68197671	rs632959	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p31.3		rs632959-A	0.295	9E-21		0.11	[-0.14--0.09] % decrease	Affymetrix [NR] (imputed)	N
1105	chr1	68212497	68212498	rs655040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p31.3		rs655040-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1105	chr1	68214734	68214735	rs516953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p31.3		rs516953-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1105	chr1	68238933	68238934	rs11209151	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	1p31.3	GNG12	rs11209151-G	0.11	3E-6	(Right eyelid medial slant)	0.017	[NR] unit increase	Affymetrix [311944]	N
1105	chr1	68255419	68255420	rs1276296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p31.3	NR	rs1276296-A	0.644422	6E-11		0.013918	[0.0098-0.0181] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1105	chr1	68268306	68268307	rs11209152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.3		rs11209152-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1105	chr1	68268783	68268784	rs75895430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p31.3		rs75895430-G	NR	5E-29		0.0796	[0.066-0.094] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1105	chr1	68270397	68270398	rs148756772	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p31.3	NR	rs148756772-C	0.03229	4E-27		0.006967	[0.0057-0.0083] unit increase	Affymetrix [NR] (imputed)	N
1105	chr1	68283489	68283490	rs66518207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p31.3		rs66518207-C	NR	2E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1105	chr1	68285044	68285045	rs61770531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p31.3	NR	rs61770531-C	NR	1E-16		0.0371	[0.028-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1106	chr1	68358176	68358177	rs7520899	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs7520899-?	NR	4E-8				NR [NR]	N
1106	chr1	68362711	68362712	rs113928341	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1p31.3		rs113928341-A	0.983063	4E-6		0.0360962	[0.021-0.052] unit increase	Illumina [13900000] (imputed)	N
1106	chr1	68369949	68369950	rs11209173	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs11209173-?	NR	3E-8				NR [NR]	N
1106	chr1	68370850	68370851	rs10789249	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs10789249-?	NR	2E-8				NR [NR]	N
1106	chr1	68370850	68370851	rs10789249	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs10789249-?	NR	5E-8				NR [NR]	N
1106	chr1	68370850	68370851	rs10789249	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs10789249-?	NR	5E-8				NR [NR]	N
1106	chr1	68370850	68370851	rs10789249	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.3		rs10789249-?	NR	3E-8				NR [NR]	N
1106	chr1	68374827	68374828	rs11209175	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p31.3	NR	rs11209175-C	NR	2E-9		0.01453	[0.0098-0.0193] unit increase	Affymetrix [10847151] (imputed)	N
1106	chr1	68374827	68374828	rs11209175	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	1p31.3	GNG12	rs11209175-T	0.372461	9E-10		6.12	z score decrease	NR [10847151] (imputed)	N
1106	chr1	68384673	68384674	rs1938434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.3		rs1938434-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1106	chr1	68404202	68404203	rs12119450	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs12119450-?	NR	1E-13		0.0185227	[0.013-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1106	chr1	68404319	68404320	rs74574132	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p31.3	GNG12-AS1	rs74574132-T	NR	9E-6		0.0470779	[0.026-0.068] unit decrease	Illumina [13520550] (imputed)	N
1106	chr1	68404390	68404391	rs12127020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs12127020-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1107	chr1	68422173	68422174	rs11209185	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p31.3	GNG12, AS1	rs11209185-G	NR	4E-6	(women)	0.0209418	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
1107	chr1	68445146	68445147	rs74664319	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1p31.3	GNG12-AS1	rs74664319-G	NR	2E-6		0.0583796	[0.034-0.083] unit increase	Illumina [13520550] (imputed)	N
1107	chr1	68478104	68478105	rs996253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p31.3		rs996253-T	NR	9E-9		0.0309	[0.02-0.041] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1107	chr1	68536567	68536568	rs59689077	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1p31.3	NR	rs59689077-?	NR	3E-10				Affymetrix, Illumina [6211246] (imputed)	N
1107	chr1	68548952	68548953	rs80032087	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	1p31.3	GNG12-AS1	rs80032087-?	NR	9E-6		0.219	[0.12-0.32] unit increase	Illumina [6319684] (imputed)	N
1108	chr1	68581946	68581947	rs2435841	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p31.3		rs2435841-C	0.12	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
1108	chr1	68600246	68600247	rs112611436	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1p31.3	LOC100289178	rs112611436-T	0.99	2E-6		12.42	[7.3-17.54] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1108	chr1	68603130	68603131	rs4397637	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs4397637-?	NR	5E-43		0.035059	[0.03-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr1	68603130	68603131	rs4397637	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs4397637-G	0.814856	7E-10	(men)	0.0384775	[0.025-0.051] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68603130	68603131	rs4397637	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs4397637-G	0.813715	6E-20		0.0388858	[0.03-0.047] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68603130	68603131	rs4397637	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs4397637-G	0.812718	2E-11	(women)	0.0383038	[0.027-0.05] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68603585	68603586	rs983034	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	GNG12-AS1	rs983034-C	0.60349	2E-31		0.0225488	[0.019-0.026] unit increase	NR [13737936] (imputed)	N
1108	chr1	68603585	68603586	rs983034	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs983034-?	NR	8E-45		0.0279837	[0.024-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.3		rs1808596-T	0.12	2E-24		10.19	z score increase	Affymetrix [9061022] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.3		rs1808596-T	0.12	1E-19		9.05	z score increase	Affymetrix [9061022] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1808596-T	0.0964	3E-12				NR [9056863] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.3	NR	rs1808596-T	0.0964	1E-17				NR [9056863] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p31.3	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs1808596-?		1E-8				NR [7428630] (imputed)	N
1108	chr1	68627942	68627943	rs1808596	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p31.3	WLS	rs1808596-?		2E-10				NR [7428630] (imputed)	N
1108	chr1	68633923	68633924	rs1367448	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	1p31.3	LOC100289178	rs1367448-C	0.526	5E-6	(Dominant model)	1.554	[1.212-1.993]	Illumina [733202]	N
1108	chr1	68635074	68635075	rs1430742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	1p31.3		rs1430742-C	NR	6E-10		0.0886	[0.061-0.117] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1108	chr1	68635074	68635075	rs1430742	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	1p31.3	GPR177	rs1430742-C	0.21	3E-13		0.11	[0.07-0.14] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1108	chr1	68635389	68635390	rs2566755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	1p31.3		rs2566755-C	NR	1E-9		0.0811	[0.055-0.107] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1108	chr1	68635389	68635390	rs2566755	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	1p31.3	GPR177	rs2566755-C	0.21	2E-12		0.1	[0.07-0.13] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1108	chr1	68642239	68642240	rs74081211	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative complication after cardiac surgery	Up to 1,163 individuals	NA	1p31.3	GNG12-AS1, WLS	rs74081211-?	NR	6E-6				Illumina [9007469] (imputed)	N
1108	chr1	68647715	68647716	rs12407028	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p31.3	WLS	rs12407028-T	0.6	3E-45		0.08	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1108	chr1	68650632	68650633	rs116251444	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs116251444-?	NR	2E-9		0.0285795	[0.019-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr1	68653488	68653489	rs2026749	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs2026749-?	NR	7E-64		0.0347828	[0.031-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	GNG12-AS1	rs2566752-T	0.626833	3E-54		0.0318699	[0.028-0.036] unit decrease	NR [13737936] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs2566752-?	NR	2E-75				NR [~ 8900000] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs2566752-?	NR	4E-73		0.0385636	[0.034-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	1p31.3	WLS	rs2566752-T	0.623326	4E-23		0.0789	[0.063-0.095] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	1p31.3	WLS	rs2566752-T	0.623326	5E-20		0.0644	[0.051-0.078] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	1p31.3	NR	rs2566752-T	0.6119	2E-14		0.0776	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	1p31.3	NR	rs2566752-T	0.6056	1E-11		0.075	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p31.3	NR	rs2566752-T	0.6112	7E-31	(European)	0.0744	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p31.3	NR	rs2566752-T	0.6103	2E-34		0.0721	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1108	chr1	68656696	68656697	rs2566752	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	1p31.3	WLS	rs2566752-C	0.38	3E-9		0.16	[0.1-0.22] g/cm2 increase	Illumina [NR] (imputed)	N
1108	chr1	68656807	68656810	rs140423501	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1p31.3	WLS	rs140423501-?	NR	3E-7				Affymetrix, Illumina [12061510] (imputed)	N
1108	chr1	68656807	68656810	rs140423501	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1p31.3	WLS	rs140423501-?	NR	5E-8		0.08	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1108	chr1	68657509	68657510	rs1430740	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	1p31.3	GPR177	rs1430740-?	NR	1E-11	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
1108	chr1	68662281	68662282	rs2820501	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	GNG12-AS1	rs2820501-C	0.0454163	3E-21		0.0429292	[0.034-0.052] unit increase	NR [13737936] (imputed)	N
1108	chr1	68663846	68663847	rs17130567	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	1p31.3	GNG12-AS1	rs17130567-G	0.254436	2E-9		0.10955559	[0.074-0.146] unit decrease	Affymetrix [7288503] (imputed)	N
1108	chr1	68663903	68663904	rs78252812	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	GNG12-AS1	rs78252812-C	0.97214	2E-10		0.037522	[0.026-0.049] unit decrease	NR [13737936] (imputed)	N
1108	chr1	68664755	68664755	rs143243230	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs143243230-?	NR	3E-74		0.0392969	[0.035-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr1	68664755	68664755	rs143243230	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs143243230-G	0.46476	1E-17	(women)	0.0409612	[0.031-0.051] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68664755	68664755	rs143243230	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs143243230-G	0.463462	1E-26		0.0368536	[0.03-0.044] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68664755	68664755	rs143243230	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	GNG12-AS1	rs143243230-G	0.461976	9E-10	(men)	0.0320586	[0.021-0.043] unit decrease	NR [17166351] (imputed)	N
1108	chr1	68665022	68665023	rs7554551	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	GNG12-AS1	rs7554551-T	0.65836	2E-13		0.0155654	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
1108	chr1	68665022	68665023	rs7554551	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs7554551-?	NR	2E-36		0.0275089	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1109	chr1	68694250	68694251	rs4655789	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	1p31.3		rs4655789-G	0.14	8E-6		1.14	[1.08-1.19]	Illumina [11796347] (imputed)	N
1109	chr1	68694876	68694877	rs2566774	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.3	WLS	rs2566774-T	0.188025	2E-59		0.0390628	[0.034-0.044] unit increase	NR [13737936] (imputed)	N
1109	chr1	68694876	68694877	rs2566774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.3		rs2566774-?	NR	1E-56				NR [~ 8900000] (imputed)	N
1109	chr1	68694876	68694877	rs2566774	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs2566774-?	NR	1E-62		0.0412901	[0.036-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1109	chr1	68700367	68700368	rs2820475	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	1p31.3	intergenic	rs2820475-?	NR	4E-6	(Female, Pre-puberty)	0.247	[0.142-0.352] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1109	chr1	68720434	68720435	rs4655581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p31.3		rs4655581-T	NR	1E-14		0.0196	[0.015-0.025] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1109	chr1	68720434	68720435	rs4655581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p31.3		rs4655581-T	NR	2E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1109	chr1	68720447	68720448	rs4655791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p31.3		rs4655791-A	0.093012	2E-10		0.023974763	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1109	chr1	68720447	68720448	rs4655791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p31.3		rs4655791-A	0.0930109999999999	4E-10		0.023795897	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1109	chr1	68720447	68720448	rs4655791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p31.3		rs4655791-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1109	chr1	68720757	68720758	rs10493441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p31.3		rs10493441-A	NR	4E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1109	chr1	68720757	68720758	rs10493441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs10493441-A	0.12189	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1109	chr1	68721236	68721237	rs17130631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p31.3	NR	rs17130631-C	0.094406	2E-11		0.021268	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1109	chr1	68725889	68725890	rs17130635	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p31.3	WLS, RPE65	rs17130635-?		6E-6	(EA)	0.18786351	[0.11-0.27] unit increase	Illumina [13620258] (imputed)	N
1109	chr1	68725906	68725907	rs11209240	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.3		rs11209240-?	NR	8E-54		0.0414888	[0.036-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
1109	chr1	68725906	68725907	rs11209240	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	WLS	rs11209240-A	0.840111	6E-11	(women)	0.0367758	[0.024-0.049] unit decrease	NR [17166351] (imputed)	N
1109	chr1	68725906	68725907	rs11209240	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	WLS	rs11209240-A	0.839179	5E-21		0.0407933	[0.032-0.05] unit decrease	NR [17166351] (imputed)	N
1109	chr1	68725906	68725907	rs11209240	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p31.3	WLS	rs11209240-A	0.838113	6E-10	(men)	0.0405191	[0.027-0.054] unit decrease	NR [17166351] (imputed)	N
1109	chr1	68726829	68726830	rs34387644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs34387644-T	0.122868	6E-13				Affymetrix, Illumina [24558453] (imputed)	N
1109	chr1	68731226	68731227	rs10493442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.3	NR	rs10493442-G	0.134858	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1109	chr1	68764948	68764949	rs10889761	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	1p31.3	WLS	rs10889761-T	0.24	9E-6		0.47	[0.25-0.69] unit increase	Illumina [5833901] (imputed)	N
1109	chr1	68773909	68773910	rs34151819	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p31.3	WLS, RPE65	rs34151819-C	0.98	1E-10		0.02	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1109	chr1	68773909	68773910	rs34151819	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p31.3	WLS	rs34151819-C	0.98	5E-10		0.02	[0.013-0.027] unit increase	Affymetrix [at least 8002429] (imputed)	N
1109	chr1	68785212	68785213	rs11209261	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	1p31.3	GPR177	rs11209261-?	0.24	3E-6	(FEV1 65%)	1.2346	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1110	chr1	68837168	68837169	rs4076000	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p31.3	ELOCP18, RPE65	rs4076000-A	NR	2E-7		0.0381	unit increase	Illumina [15409056] (imputed)	N
1110	chr1	68840506	68840507	rs3118390	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p31.3	NR	rs3118390-C	0.497	4E-7	(IFNgamma_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
1110	chr1	68846245	68846246	rs3125918	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p31.3	RPE65	rs3125918-A	0.6	5E-14		0.00708	[0.0052-0.0089] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1110	chr1	68846740	68846740	rs111882448	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p31.3	NR	rs111882448-CA	0.35076799999999997	4E-9		0.01675	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1110	chr1	68848680	68848681	rs1925953	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p31.3	WLS, RPE65	rs1925953-A	0.6	4E-20		0.0081	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1110	chr1	68848680	68848681	rs1925953	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1p31.3	RPE65	rs1925953-T	NR	3E-8	(EA)	0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1110	chr1	68848680	68848681	rs1925953	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1p31.3	RPE65	rs1925953-T	NR	2E-7		0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1110	chr1	68861256	68861257	rs3118389	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	1p31.3		rs3118389-?	NR	5E-8				Illumina [8703729] (imputed)	N
1110	chr1	68916122	68916123	rs382422	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	1p31.3	RPE65, DEPDC1	rs382422-C	0.22	3E-6	(European)	2.1		Illumina [7993459] (imputed)	N
1110	chr1	68927512	68927513	rs435066	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.3	NR	rs435066-C	0.196103507788162	7E-6	(IGP71)	0.1774	[0.1-0.255] unit decrease	Illumina [~ 2500000] (imputed)	N
1110	chr1	68927512	68927513	rs435066	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.3	NR	rs435066-C	0.196103507788162	5E-6	(IGP70)	0.1801	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1110	chr1	68927512	68927513	rs435066	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.3	NR	rs435066-C	0.195968165182547	8E-6	(IGP72)	0.1763	[0.099-0.254] unit increase	Illumina [~ 2500000] (imputed)	N
1110	chr1	68927512	68927513	rs435066	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.3	NR	rs435066-C	0.195964786286732	4E-6	(IGP62)	0.1812	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1110	chr1	68927512	68927513	rs435066	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.3	NR	rs435066-C	0.195829321603564	7E-6	(IGP63)	0.1765	[0.1-0.253] unit increase	Illumina [~ 2500000] (imputed)	N
1111	chr1	69048028	69048029	rs7534008	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	1p31.2	DEPDC1-AS1, LRRC7	rs7534008-T	0.44	7E-6		1.18	[1.10-1.28]	Affymetrix, Illumina [12148595] (imputed)	N
1111	chr1	69068266	69068267	rs139706471	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	1p31.2		rs139706471-C	0.03207	4E-6		2.055	[1.515-2.788]	Affymetrix [7975321] (imputed)	N
1112	chr1	69114138	69114139	rs116804861	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.2	NR	rs116804861-C	0.90908	8E-9		0.019837	[0.013-0.027] unit decrease	NR [NR]	N
1112	chr1	69164021	69164022	rs74852193	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p31.2	DEPDC1, LRRC7	rs74852193-G	0.03	7E-8	(EA)	0.2625	[0.17-0.36] unit increase	Illumina [~ 9000000] (imputed)	N
1112	chr1	69166565	69166566	rs114886597	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p31.2	DEPDC1, LRRC7	rs114886597-A	0.02	6E-6		0.2219	[0.13-0.32] unit increase	Illumina [~ 9000000] (imputed)	N
1112	chr1	69169562	69169563	rs1492057	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p31.2	NR	rs1492057-C	0.10835	1E-8		0.05766627	[0.038-0.077] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1112	chr1	69171868	69171869	rs2420178	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.2	RP4-694A7.4	rs2420178-A	NR	2E-8		0.027157696	[0.018-0.037] unit increase	Affymetrix [NR]	N
1112	chr1	69184213	69184214	rs854286	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.2	NR	rs854286-?	NR	3E-7		5.114	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1113	chr1	69257693	69257694	rs185424124	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	1p31.2		rs185424124-T	0.014432	8E-7		2.1944118	NR	Affymetrix [7846216] (imputed)	N
1113	chr1	69273438	69273439	rs10493450	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.2	RP11-424D14.1	rs10493450-A	NR	4E-9		0.028605038	[0.019-0.038] unit decrease	Affymetrix [NR]	N
1113	chr1	69284322	69284323	rs112134147	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.2	NR	rs112134147-T	NR	7E-9		5.796	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1113	chr1	69295069	69295070	rs955841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.2	Intergenic	rs955841-A	0.8952	1E-8	(MTAG)	0.0153	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1113	chr1	69331298	69331299	rs7552964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.2		rs7552964-A	0.1013	2E-10		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1113	chr1	69331298	69331299	rs7552964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.2	Intergenic	rs7552964-A	0.1013	3E-13	(MTAG)	0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1114	chr1	69369836	69369837	rs7551318	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.2	DEPDC1	rs7551318-T	0.933	7E-7	(EA, men)	0.062	[0.038-0.087] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1114	chr1	69389241	69389242	rs6682095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p31.2		rs6682095-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1114	chr1	69407809	69407810	rs12740061	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p31.2		rs12740061-T	0.05	2E-8	(African)	0.11	[0.073-0.147] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1114	chr1	69407809	69407810	rs12740061	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p31.2		rs12740061-?	NR	3E-7	(African)	0.1118	[0.072-0.152] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1114	chr1	69407809	69407810	rs12740061	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (1df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p31.2		rs12740061-T	0.05	7E-9	(African)	0.1151	[0.076-0.154] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1114	chr1	69407809	69407810	rs12740061	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (1df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	1p31.2		rs12740061-?	NR	9E-8	(African)	0.1144	[0.072-0.156] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1114	chr1	69427575	69427576	rs9436866	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p31.2	NR	rs9436866-A	0.101392	9E-12		0.071117975	[0.051-0.092] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1114	chr1	69427575	69427576	rs9436866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p31.2	Intergenic	rs9436866-A	0.9029	6E-12		0.0331	[0.024-0.043] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1114	chr1	69427575	69427576	rs9436866	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.2	RP11-424D14.1	rs9436866-A	NR	5E-10		0.030729827	[0.021-0.04] unit decrease	Affymetrix [NR]	N
1114	chr1	69437855	69437856	rs4484967	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.2	Intergenic	rs4484967-A	0.1009	3E-13	(MTAG)	0.0278	[0.02-0.035] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1114	chr1	69438776	69438777	rs2420551	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.2	NR	rs2420551-A	NR	5E-11		6.583	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1114	chr1	69438776	69438777	rs2420551	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.2	RP11-424D14.1	rs2420551-A	NR	2E-8		5.599	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1115	chr1	69558138	69558139	rs3123012	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1p31.2	intergenic	rs3123012-T	0.0901	5E-6		2.3069	[1.95-2.67]	Illumina [8809853] (imputed)	N
1115	chr1	69558836	69558837	rs1953604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.2	NR	rs1953604-C	0.01394	2E-9	(DPP7)	0.1523	NR unit increase	Illumina [1671387] (imputed)	N
1115	chr1	69579251	69579252	rs4147141	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	1p31.2	intergenic	rs4147141-?	NR	8E-6	(binary)			Perlegen [429981]	N
1115	chr1	69579251	69579252	rs4147141	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	1p31.2	intergenic	rs4147141-?	NR	6E-6	(count)			Perlegen [429981]	N
1116	chr1	69684996	69684997	rs4650135	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	1p31.2	intergenic	rs4650135-?		2E-6	(M)	29.56	[17.8-41.32] unit decrease	Illumina [693128]	N
1116	chr1	69684996	69684997	rs4650135	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	1p31.2	intergenic	rs4650135-?	NR	5E-6	(binary)			Perlegen [429981]	N
1116	chr1	69721900	69721901	rs12093443	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	1p31.2	intergenic	rs12093443-G	0.01	9E-9		2.996	[2.04-3.96] unit increase	Illumina [2668805]	N
1117	chr1	69737906	69737907	rs150949450	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p31.2	LRRC7	rs150949450-T	0.9604	2E-8		0.02776872	[0.018-0.038] unit decrease	Illumina [9339358] (imputed)	N
1117	chr1	69765359	69765360	rs4650204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p31.2	Intergenic	rs4650204-G	0.6644	3E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1117	chr1	69785504	69785505	rs34461570	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	1p31.1	Intergenic	rs34461570-A	NR	3E-6		0.9636	[NR] unit increase	Affymetrix [4384682] (imputed)	N
1117	chr1	69788481	69788482	rs10789285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs10789285-T	0.7584	1E-9	(MTAG)	0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1117	chr1	69788481	69788482	rs10789285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs10789285-T	0.7542	2E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1117	chr1	69788481	69788482	rs10789285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs10789285-T	0.7542	3E-11	(MTAG)	0.0101	[0.0072-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1117	chr1	69788481	69788482	rs10789285	25939698	Tsoi LC	2015-05-05	Nat Commun	Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.	Psoriasis	3,994 European ancestry cases, 7,699 European ancestry controls	6,268 European ancestry cases,  14,172 European ancestry controls, 5,033 cases, 5,707 controls	1p31.1	LRRC7	rs10789285-G	0.25	3E-9		1.12	[NR]	Illumina [696365] (imputed)	N
1118	chr1	69876848	69876849	rs150561664	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p31.1	NR	rs150561664-A	0.001	4E-9	(EA)	0.465	[0.31-0.62] unit decrease	Affymetrix [13250765] (imputed)	N
1118	chr1	69949698	69949699	rs138006855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p31.1	Intergenic	rs138006855-A	0.999	3E-6	(AA)	0.308	unit increase	Illumina [NR] (imputed)	N
1118	chr1	69982595	69982596	rs147869396	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	1p31.1	NR	rs147869396-?	NR	1E-7		0.2168	[0.14-0.3] unit increase	Illumina [at least 560000] (imputed)	N
1119	chr1	70060694	70060695	rs77668180	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1p31.1	NA	rs77668180-T		3E-8		0.0193131	[0.013-0.026] unit increase	Illumina [13288253] (imputed)	N
1119	chr1	70068881	70068882	rs186040878	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	1p31.1	NR	rs186040878-C	NR	5E-6		0.8092	[0.46-1.16] SD units decrease	NR [10700000] (imputed)	N
1119	chr1	70070591	70070592	rs1749509	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs1749509-?	NR	2E-6				Affymetrix [NR]	N
1119	chr1	70084796	70084797	rs11809230	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	1p31.1	NR	rs11809230-T	NR	6E-6		0.29	[0.17-0.41] unit increase	NR [5896100] (imputed)	N
1119	chr1	70117403	70117404	rs1024268	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs1024268-T	0.4186	3E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1119	chr1	70117403	70117404	rs1024268	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs1024268-T	0.4186	4E-10	(MTAG)	0.0083	[0.0058-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1119	chr1	70117447	70117448	rs1418004	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs1418004-T	0.4177	2E-9	(MTAG)	0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1120	chr1	70147865	70147866	rs181704351	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	1p31.1	NR	rs181704351-T		5E-6		0.46	[0.28-0.64] unit increase	NR [5896100] (imputed)	N
1120	chr1	70154440	70154441	rs1417437	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	1p31.1	LRRC7	rs1417437-?	0.65	9E-6	(CL_CLP)	1.25	[1.37-1.14]	Illumina [NR]	N
1120	chr1	70154440	70154441	rs1417437	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	1p31.1	LRRC7	rs1417437-?	0.64	4E-6	(CLP)	1.3	[1.47-1.16]	Illumina [NR]	N
1120	chr1	70181381	70181382	rs114048798	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1p31.1		rs114048798-T	0.962741	8E-6		0.0226878	[0.013-0.033] unit decrease	Illumina [13900000] (imputed)	N
1120	chr1	70181381	70181382	rs114048798	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1p31.1		rs114048798-T	0.960768	6E-6		0.0309177	[0.017-0.045] unit decrease	Illumina [13900000] (imputed)	N
1120	chr1	70207078	70207079	rs10889850	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	1p31.1	LRRC7	rs10889850-?	NR	2E-6		4.78	[NR] z score decrease	Affymetrix, Illumina [up to 583824] (imputed)	N
1121	chr1	70335681	70335682	rs2226284	22322875	Kim SJ	2012-02-09	Circ J	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NA	1p31.1	LRRC7	rs2226284-?	NR	3E-8	SNP+sleep	5.91	[3.15-11.11]	Affymetrix [334750]	N
1121	chr1	70355980	70355981	rs12037173	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	1p31.1	LRRC7	rs12037173-?	NR	4E-6				Illumina [835136]	N
1122	chr1	70404539	70404540	rs1023008	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	LRRC7	rs1023008-T	0.481	6E-6	(Light activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1122	chr1	70460834	70460835	rs12062605	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs12062605-?	NR	4E-9				Affymetrix [NR]	N
1123	chr1	70525233	70525234	rs687531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs687531-T	0.6486	9E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr1	70525233	70525234	rs687531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs687531-T	0.6527	1E-9	(MTAG)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr1	70525233	70525234	rs687531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs687531-T	0.651	5E-9	(MTAG)	0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr1	70566020	70566021	rs663251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs663251-T	0.6532	4E-8		0.0081	[0.0052-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1123	chr1	70645349	70645350	rs527331373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs527331373-?	NR	7E-6		4.496	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1124	chr1	70656106	70656107	rs118141904	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	1p31.1		rs118141904-C	0.03077	5E-6		1.738	[1.37-2.205]	Affymetrix [7975321] (imputed)	N
1124	chr1	70675025	70675026	rs112866042	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1p31.1	NR	rs112866042-?	NR	8E-6		0.584832	[0.33-0.84] unit increase	NR [13958389] (imputed)	N
1124	chr1	70776850	70776851	rs139692213	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	1p31.1	NR	rs139692213-T		5E-6		0.6028	[0.34-0.86] SD units increase	NR [10700000] (imputed)	N
1125	chr1	70873757	70873758	rs140293087	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	1p31.1	CTH	rs140293087-T	0.02	4E-6		0.25	[0.14-0.45]	Affymetrix [7435577] (imputed)	N
1125	chr1	70887098	70887099	rs672203	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	1p31.1	CTH	rs672203-A	0.52	2E-6	(Dominant)	5.33	[2.59-11.0]	Illumina [555600]	N
1125	chr1	70896318	70896319	rs113285275	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	1p31.1	HHLA3, CTH	rs113285275-A	0.2344	3E-6		0.0328	NR unit decrease	NR [NR] (imputed)	N
1125	chr1	70904799	70904800	rs1021737	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.1	HHLA3	rs1021737-?	NR	9E-6	(TAG 54:4)	0.16351534	[0.091-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1126	chr1	70921172	70921173	rs10458561	20921969	Aberg K	2010-10-05	Pharmacogenomics J	Genome-wide association study of antipsychotic-induced QTc interval prolongation.	Antipsychotic drug-induced QTc interval prolongation	738 European, African American, Hispanic, and other ancestry Schizophrenia cases	NA	1p31.1	intergenic	rs10458561-?	NR	4E-7	(Risperidone)			Affymetrix [492000]	N
1126	chr1	70930943	70930944	rs184231091	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs184231091-G	0.01	1E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
1126	chr1	70932280	70932281	rs187627524	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs187627524-A	0.99	1E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
1126	chr1	70995561	70995562	rs2651244	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1p31.1	Intergenic	rs2651244-?		1E-6				Illumina [9578670] (imputed)	N
1126	chr1	70995561	70995562	rs2651244	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.1	NR	rs2651244-G	0.61	2E-6	(EA)	1.063159		Affymetrix, Illumina [~ 9000000] (imputed)	N
1126	chr1	70995561	70995562	rs2651244	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1p31.1	intergenic	rs2651244-G	0.599	2E-8		1.015	[0.986-1.044]	Affymetrix, Illumina [1230000] (imputed)	N
1126	chr1	71040165	71040166	rs3124454	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Proximal colorectal cancer	15,706 European ancestry cases, 64,159 European ancestry controls	NA	1p31.1	PTGER3	rs3124454-G	0.5809	1E-8		1.09	1.06-1.12	Affymetrix, Illumina [11437803] (imputed)	N
1126	chr1	71040165	71040166	rs3124454	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Colon cancer	32,002 European ancestry cases, 64,159 European ancestry controls	NA	1p31.1	PTGER3	rs3124454-G	0.581	1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [11928745] (imputed)	N
1127	chr1	71057152	71057153	rs2992041	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	1p31.1	CTH	rs2992041-C	NR	9E-7		1.03	percent increase	Affymetrix [8762422] (imputed)	N
1127	chr1	71073920	71073921	rs1932064	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	1p31.1	Intergenic	rs1932064-T	0.7	6E-6	(Dominant model)	1.62	[1.05-2.51]	Illumina [508761]	N
1127	chr1	71084594	71084595	rs80199290	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p31.1	NR	rs80199290-G	0.095	2E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1127	chr1	71088779	71088780	rs17131365	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.1	NR	rs17131365-?		3E-7				Illumina [4322238] (imputed)	N
1127	chr1	71156570	71156571	rs113067418	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	1p31.1	CTH, LOC101927244	rs113067418-A		8E-6		0.913	[0.51-1.31] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1128	chr1	71195537	71195538	rs2421787	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	1p31.1	RP5-952N6.1	rs2421787-C	0.41	9E-6		0.962	[0.54-1.39] unit decrease	Illumina [6380737] (imputed)	N
1129	chr1	71335752	71335753	rs74086974	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	1p31.1	PTGER3, ZRANB2, MIR186	rs74086974-?		3E-6		4.522	[2.75-6.29] unit increase	Illumina [~ 4900000] (imputed)	N
1129	chr1	71348356	71348357	rs11807666	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	1p31.1	PTGER3	rs11807666-T	0.21	1E-6	(female)	0.344	[0.21-0.48] unit increase	Illumina [6380737] (imputed)	N
1129	chr1	71426568	71426569	rs573688	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	PTGER3	rs573688-T	NR	3E-8		0.022264529	[0.014-0.03] unit increase	Affymetrix [NR]	N
1130	chr1	71442456	71442457	rs481940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs481940-T	0.2546	5E-10		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1130	chr1	71442456	71442457	rs481940	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs481940-T	0.2546	8E-10	(MTAG)	0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1130	chr1	71443149	71443150	rs909848	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs909848-C	0.60707254318789	7E-6	(IGP27)	0.1434	[0.081-0.206] unit increase	Illumina [~ 2500000] (imputed)	N
1130	chr1	71458857	71458858	rs1883460	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	1p31.1	PTGER3, ZRANB2	rs1883460-T	0.39	2E-6	(ALL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
1130	chr1	71490121	71490122	rs1022528	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs1022528-A	0.344	2E-12		0.00801582	[0.0058-0.0102] unit increase	NR [9732723] (imputed)	N
1130	chr1	71490121	71490122	rs1022528	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs1022528-A	0.344	8E-11	(Conditioned on chr1:72752073, chr1:73824909)	0.017402174	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
1130	chr1	71491889	71491890	rs5024204	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1p31.1	NR	rs5024204-T	0.278	3E-9		0.009702711	[0.0065-0.0129] unit increase	NR [~ 10000000] (imputed)	N
1130	chr1	71492132	71492133	rs74532911	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	1p31.1	NR	rs74532911-G	0.9734	3E-6		1.6587	[1.45-1.87]	Illumina [8567708] (imputed)	N
1130	chr1	71493638	71493639	rs66904764	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p31.1	NR	rs66904764-C	0.278	3E-12		0.010265	[0.0074-0.0132] unit increase	NR [~ 9732723] (imputed)	N
1130	chr1	71503446	71503447	rs2817866	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	1p31.1	PTGER3	rs2817866-?	NR	2E-6		0.05	[0.028-0.072] unit decrease	NR [7682250] (imputed)	N
1130	chr1	71503446	71503447	rs2817866	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1p31.1	NR	rs2817866-A	0.428	1E-8		0.009987169	[0.0066-0.0134] unit increase	Affymetrix [NR] (imputed)	N
1130	chr1	71518152	71518153	rs7516464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p31.1		rs7516464-T	NR	6E-11		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1130	chr1	71533286	71533287	rs66461782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p31.1		rs66461782-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1130	chr1	71533286	71533287	rs66461782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.1		rs66461782-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1131	chr1	71580069	71580070	rs79766811	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	1p31.1	ZRANB2-AS2	rs79766811-A	0.9688	2E-6		0.7316	[0.43-1.03] unit increase	NR [NR] (imputed)	N
1131	chr1	71580069	71580070	rs79766811	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	1p31.1	ZRANB2-AS2	rs79766811-A	0.9688	2E-6		0.7316	[0.43-1.03] unit increase	NR [NR] (imputed)	N
1131	chr1	71582196	71582197	rs17097556	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	1p31.1	NR	rs17097556-G	NR	6E-7				Affymetrix [723305]	N
1131	chr1	71582196	71582197	rs17097556	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	1p31.1	NR	rs17097556-G	NR	2E-10	(EA)	0.06	NR unit increase	Affymetrix [723305]	N
1131	chr1	71585096	71585097	rs12031875	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	1p31.1	ZRANB2-AS2	rs12031875-A	0.82	2E-9		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1131	chr1	71591184	71591184	rs199814749	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	1p31.1	NR	rs199814749-CT	0.08689	4E-6		0.2421	[0.14-0.34] unit decrease	Illumina [10677593] (imputed)	N
1132	chr1	71702510	71702511	rs115213730	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	1p31.1	ZRANB2-AS2	rs115213730-?		1E-9				Illumina [9499600] (imputed)	N
1132	chr1	71732971	71732972	rs17091046	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1p31.1	NEGR1	rs17091046-A	0.08	7E-6	(EA)	0.16	0.09-0.24 unit increase	Illumina [NR] (imputed)	N
1132	chr1	71769464	71769465	rs12048727	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	1p31.1	NR	rs12048727-G	0.3296	1E-9		0.013247359	[0.009-0.0175] unit increase	Affymetrix [10613246] (imputed)	N
1132	chr1	71801038	71801039	rs2163503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs2163503-A	0.7851	4E-8	(MTAG)	0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr1	71801038	71801039	rs2163503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs2163503-A	0.7897	1E-9	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1132	chr1	71801038	71801039	rs2163503	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	ZRANB2-AS2	rs2163503-A	NR	8E-9		0.020756675	[0.014-0.028] unit decrease	Affymetrix [NR]	N
1132	chr1	71819147	71819148	rs116133561	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	1p31.1	NR	rs116133561-G	0.06167	7E-7		0.3097	[0.19-0.43] unit decrease	Illumina [10677593] (imputed)	N
1133	chr1	71907539	71907540	rs12125471	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	ZRANB2-AS2	rs12125471-T	NR	2E-8		0.027090738	[0.018-0.037] unit increase	Affymetrix [NR]	N
1133	chr1	71929288	71929289	rs977145	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (HAMA-A score reduction after 24 weeks)	98 European ancestry individuals	NA	1p31.1	NEGR1	rs977145-A	NR	7E-6				Illumina [266820] (imputed)	N
1133	chr1	71949902	71949903	rs17091269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.1	Intergenic	rs17091269-T	0.2355	4E-8	(MTAG)	0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1133	chr1	71949902	71949903	rs17091269	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	1p31.1	NR	rs17091269-A		6E-6				NR [525577]	N
1134	chr1	72063309	72063310	rs12564885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs12564885-?	NR	1E-6		4.878	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1134	chr1	72071128	72071129	rs10493485	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1p31.1	NEGR1	rs10493485-?	0.29	2E-6	(tPA)			Affymetrix [70897]	N
1135	chr1	72093634	72093635	rs12136092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs12136092-A	0.5656	7E-18	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr1	72093634	72093635	rs12136092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p31.1	Intergenic	rs12136092-G	0.4344	1E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr1	72105375	72105376	rs12143094	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12143094-C	NR	2E-8		0.034816425	[0.023-0.047] unit increase	Affymetrix [NR]	N
1135	chr1	72105375	72105376	rs12143094	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs12143094-C	0.0621	3E-9		0.028923234	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1135	chr1	72107385	72107386	rs12404086	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.1	Intergenic	rs12404086-T	0.5651	7E-15	(MTAG)	0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr1	72107385	72107386	rs12404086	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p31.1	Intergenic	rs12404086-C	0.4349	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr1	72114786	72114787	rs11576565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs11576565-A	0.4898	9E-12	(MTAG)	0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr1	72114786	72114787	rs11576565	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs11576565-A	NR	1E-8		0.017102946	[0.011-0.023] unit increase	Affymetrix [NR]	N
1135	chr1	72120033	72120034	rs72677177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs72677177-A	0.4017	3E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr1	72120033	72120034	rs72677177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs72677177-A	0.4017	1E-15	(MTAG)	0.0107	[0.0082-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr1	72134584	72134585	rs7531932	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs7531932-A	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1135	chr1	72153087	72153088	rs12130762	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12130762-A	NR	7E-11		0.03412346	[0.024-0.044] unit increase	Affymetrix [NR]	N
1135	chr1	72192615	72192616	rs76099857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs76099857-G	0.01045	6E-9	(TNC)	0.06176	NR unit increase	Illumina [1671387] (imputed)	N
1135	chr1	72192615	72192616	rs76099857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs76099857-G	0.01045	1E-12	(AOC3)	0.02315	NR unit increase	Illumina [1671387] (imputed)	N
1136	chr1	72221590	72221591	rs190217640	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	1p31.1	NEGR1, NEGR1-IT1	rs190217640-?	NR	7E-6		1.4492754	[1.23-1.69]	Affymetrix, Illumina [11480632] (imputed)	N
1136	chr1	72233809	72233810	rs1599180	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs1599180-A	0.4758	1E-9	(MTAG)	0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1136	chr1	72271263	72271264	rs531071	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	1p31.1	NEGR1-IT1	rs531071-A	0.5379	7E-7		0.0051	[0.0031-0.0071] unit increase	Affymetrix [~ 7740000] (imputed)	N
1136	chr1	72274472	72274473	rs12141391	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	1p31.1	NEGR1	rs12141391-A	0.02	7E-6				Illumina [502033]	N
1136	chr1	72285186	72285187	rs140524673	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs140524673-T	0.01045	1E-9	(AOC3)	0.02006	NR unit increase	Illumina [1671387] (imputed)	N
1136	chr1	72345791	72345792	rs7523405	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p31.1	NR	rs7523405-A	NR	3E-6	(GEE model)	1.0999	[0.64-1.56] unit decrease	NR [NR] (imputed)	N
1137	chr1	72392634	72392635	rs55927656	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	1p31.1	Intergenic	rs55927656-G		7E-6		0.189	[0.074-0.189] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1137	chr1	72444127	72444128	rs11209878	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p31.1	NR	rs11209878-?	NR	2E-6	(AA)	6.0	[4.61-7.39]	Illumina [905956]	N
1137	chr1	72461381	72461382	rs12139692	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12139692-T	NR	8E-12		0.032829404	[0.023-0.042] unit increase	Affymetrix [NR]	N
1137	chr1	72463132	72463133	rs6678735	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p31.1	NR	rs6678735-?	NR	6E-6	(AA)	5.76	[4.41-7.11]	Illumina [905956]	N
1137	chr1	72480856	72480857	rs114667465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs114667465-A	0.9551	2E-9	(MTAG)	0.0238	[0.016-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr1	72480856	72480857	rs114667465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p31.1	Intergenic	rs114667465-A	0.9551	6E-10		0.0338	[0.023-0.045] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1138	chr1	72509741	72509742	rs34122915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs34122915-C	0.503	4E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1138	chr1	72512987	72512988	rs11209896	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	1p31.1	NR	rs11209896-?	NR	2E-6		0.0747	[0.044-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
1138	chr1	72513120	72513121	rs12564163	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	1p31.1	NR	rs12564163-T	0.577883	2E-10		1.006	[1.004, 1.008]	Affymetrix [39302896] (imputed)	N
1138	chr1	72513185	72513186	rs1905976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p31.1		rs1905976-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1138	chr1	72514700	72514701	rs2422134	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs2422134-C	0.502957301708559	1E-8		0.0071070716	[0.0046-0.0096] unit decrease	NR [NR]	N
1138	chr1	72515716	72515717	rs4348675	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs4348675-T	NR	2E-10		6.369	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1138	chr1	72516286	72516287	rs1026997	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs1026997-T	NR	1E-9		0.01774332	[0.012-0.023] unit increase	Affymetrix [NR]	N
1138	chr1	72523178	72523179	rs80207537	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	1p31.1	NR	rs80207537-?	NR	3E-6		0.3892	[0.22-0.56] unit decrease	Illumina [at least 560000] (imputed)	N
1138	chr1	72544703	72544704	rs7542974	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	1p31.1	NR	rs7542974-G	0.75	1E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1138	chr1	72544703	72544704	rs7542974	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	1p31.1	NEGR1	rs7542974-A	0.25	4E-8		0.0068749	[0.0044-0.0093] unit increase	NR [16367095] (imputed)	N
1138	chr1	72548411	72548412	rs115084399	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	1p31.1		rs115084399-G	NR	1E-6		1.3129	unit increase	Illumina [NR] (imputed)	N
1138	chr1	72554092	72554093	rs2821260	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs2821260-T	NR	3E-16		0.0244349	[0.019-0.03] unit decrease	Affymetrix [NR]	N
1138	chr1	72559739	72559740	rs727726	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs727726-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1138	chr1	72562477	72562478	rs2016698	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs2016698-A	NR	2E-11		0.022306059	[0.016-0.029] unit decrease	Affymetrix [NR]	N
1138	chr1	72565459	72565460	rs2220253	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.1	NEGR1	rs2220253-T	0.54546875	3E-8	(NEGR1, 7050_5_3)	0.13275722	[0.086-0.18] unit increase	Illumina [> 1000000] (imputed)	N
1138	chr1	72565459	72565460	rs2220253	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.1	NEGR1	rs2220253-T	0.54546875	1E-9	(NEGR1, 13109_82_3)	0.14771737	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1138	chr1	72571363	72571364	rs1486091	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs1486091-T	NR	1E-16		8.265	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1138	chr1	72575559	72575560	rs2821248	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	1p31.1	NEGR1, NEGR1-IT1	rs2821248-A	0.83	1E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr1	72575559	72575560	rs2821248	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	1p31.1	NEGR1	rs2821248-A	0.83	8E-12		0.042	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr1	72575559	72575560	rs2821248	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NEGR1, NEGR1-IT1	rs2821248-A	0.83	1E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1138	chr1	72577949	72577950	rs67474621	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs67474621-A	NR	6E-13		7.192	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1138	chr1	72578708	72578709	rs12402629	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	1p31.1	NR	rs12402629-T	0.5258	4E-8		0.06654919	[0.043-0.09] unit decrease	NR [NR]	N
1138	chr1	72582778	72582779	rs77944304	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs77944304-T	NR	3E-10		6.299	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1138	chr1	72588118	72588119	rs12128707	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p31.1	NR	rs12128707-A	0.285288	3E-20		0.06461632	[0.051-0.078] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1138	chr1	72588118	72588119	rs12128707	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs12128707-A	0.7333	5E-27	(MTAG)	0.028	[0.023-0.033] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1138	chr1	72588118	72588119	rs12128707	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p31.1	Intergenic	rs12128707-A	0.7333	9E-21		0.0303	[0.024-0.037] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1138	chr1	72588118	72588119	rs12128707	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs12128707-A	NR	4E-18		8.672	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1138	chr1	72588118	72588119	rs12128707	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12128707-A	NR	3E-18		0.0296532	[0.023-0.036] unit decrease	Affymetrix [NR]	N
1138	chr1	72588657	72588658	rs114030538	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs114030538-T	0.9361	3E-9	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1138	chr1	72588657	72588658	rs114030538	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs114030538-T	NR	1E-8		5.686	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1138	chr1	72590192	72590193	rs2821239	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	1p31.1	NR	rs2821239-A	NR	8E-7	(AA)	0.11811	[0.071-0.165] unit increase	Affymetrix [up to 6007810] (imputed)	N
1138	chr1	72610878	72610879	rs12133604	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12133604-T	NR	9E-17		0.025605112	[0.02-0.032] unit increase	Affymetrix [NR]	N
1138	chr1	72612614	72612615	rs11587895	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs11587895-T	NR	3E-12		7.002	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1139	chr1	72615117	72615118	rs11587434	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p31.1	NEGR1	rs11587434-G	0.740135	2E-9		0.0126144	[0.0085-0.0167] unit decrease	NR [13737936] (imputed)	N
1139	chr1	72615561	72615562	rs375435036	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	1p31.1	NEGR1	rs375435036-?	NR	3E-6		2.52	1.71-3.73	Illumina [~ 18000000] (imputed)	N
1139	chr1	72618543	72618544	rs2422136	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p31.1	NEGR1	rs2422136-A	0.496	3E-11		0.01577545	[0.011-0.02] unit increase	Affymetrix [11515109] (imputed)	N
1139	chr1	72619960	72619961	rs2422137	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	1p31.1	NEGR1	rs2422137-C	0.545986	2E-9	(EA)	0.00750123	[0.0051-0.0099] unit increase	Affymetrix [~ 8800000] (imputed)	N
1139	chr1	72621462	72621463	rs12124523	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1p31.1	NR	rs12124523-T	0.0928	5E-9		0.01771722	[0.012-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1139	chr1	72621462	72621463	rs12124523	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p31.1	NEGR1	rs12124523-?	NR	2E-12		0.022796417	[0.016-0.029] unit increase	NR [7306098]	N
1139	chr1	72621462	72621463	rs12124523	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	1p31.1	NEGR1	rs12124523-T	0.1087	2E-10		0.022904875	[0.016-0.03] unit decrease	Affymetrix [11514936] (imputed)	N
1139	chr1	72627030	72627031	rs11209928	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	NEGR1	rs11209928-A	0.497	2E-8		0.011433508	[0.0075-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1139	chr1	72632884	72632885	rs17589603	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs17589603-A	NR	6E-11		6.549	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1139	chr1	72632884	72632885	rs17589603	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs17589603-A	NR	5E-11		6.587	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1139	chr1	72632884	72632885	rs17589603	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs17589603-A	NR	1E-8		0.028868575	[0.019-0.039] unit increase	Affymetrix [NR]	N
1139	chr1	72634911	72634912	rs1157072	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	NEGR1	rs1157072-G	0.04857	2E-11		0.030455686	[0.022-0.039] unit increase	Affymetrix [up to 18485882] (imputed)	N
1139	chr1	72634911	72634912	rs1157072	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs1157072-A	NR	4E-14		0.0510379	[0.038-0.064] unit decrease	Affymetrix [NR]	N
1139	chr1	72635995	72635996	rs12134600	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1p31.1	intergenic	rs12134600-A	0.116	6E-8		0.038	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1139	chr1	72673916	72673917	rs72941254	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	1p31.1	NEGR1	rs72941254-A	0.05	4E-6	(M, Percentage fat mass)	3.9	[2.25-5.55] unit increase	Illumina [125878]	N
1139	chr1	72673916	72673917	rs72941254	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	1p31.1	NEGR1	rs72941254-A	0.05	2E-6	(M, Fat mass)	3.28	[1.97-4.59] unit increase	Illumina [125878]	N
1139	chr1	72712606	72712607	rs2126077	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NEGR1	5,365 Icelandic ancestry individuals	NA	1p31.1		rs2126077-A	0.4867	2E-13		0.135269	[0.099-0.171] unit decrease	Illumina [7506463] (imputed)	N
1139	chr1	72717742	72717743	rs1776012	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	1p31.1	NEGR1	rs1776012-A	0.5264	1E-7		1.3577732	[1.24-1.47]	Illumina [500508]	N
1139	chr1	72717742	72717743	rs1776012	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	1p31.1	NEGR1	rs1776012-G	0.4774	9E-6		0.4848	[0.27-0.7] unit decrease	Illumina [500508]	N
1139	chr1	72718609	72718610	rs9424976	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs9424976-T	NR	2E-8		5.59	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1139	chr1	72720356	72720357	rs12137936	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p31.1	NR	rs12137936-G	NR	3E-8		0.01381	[0.0089-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
1139	chr1	72720356	72720357	rs12137936	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p31.1	NEGR1	rs12137936-C	0.307137	3E-8		5.54	z score decrease	NR [10847151] (imputed)	N
1139	chr1	72720356	72720357	rs12137936	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	1p31.1	NEGR1	rs12137936-C	0.307137	1E-9		6.06	z score decrease	NR [10847151] (imputed)	N
1139	chr1	72723210	72723211	rs61765646	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p31.1	NEGR1	rs61765646-T	0.813206	1E-13		0.0557609	[0.041-0.07] unit decrease	Affymetrix [509255] (imputed)	N
1139	chr1	72723862	72723863	rs2000228	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	1p31.1	NEGR1	rs2000228-?	NR	7E-9		0.00714108	[0.0047-0.0096] unit decrease	Affymetrix [NR] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1p31.1	NR	rs1620977-A		1E-8		0.02653	[0.017-0.036] unit increase	NR [6694342]	N
1139	chr1	72729141	72729142	rs1620977	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs1620977-?	NR	1E-18		0.0240833	[0.019-0.029] unit increase	Affymetrix [25921788] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	1p31.1	NEGR1	rs1620977-A	0.2729	3E-6		0.5819	[0.34-0.83] unit increase	Illumina [500508]	N
1139	chr1	72729141	72729142	rs1620977	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	NEGR1	rs1620977-G	0.2698	1E-8		0.013100909	[0.0086-0.0176] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	1p31.1	NEGR1	rs1620977-A	NR	9E-13		0.024	[0.018-0.03] unit increase	Illumina [2013566] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NR	rs1620977-A	0.2696	2E-14		1.053	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	1p31.1		rs1620977-A	0.26	7E-9		0.056	[0.036-0.076] unit increase	Illumina [NR] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p31.1		rs1620977-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1139	chr1	72729141	72729142	rs1620977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs1620977-A	NR	3E-11		6.661	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p31.1		rs34305371-A	0.08769	1E-15		75.96627	z score increase	NR [6814003]	N
1139	chr1	72733609	72733610	rs34305371	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	NEGR1	rs34305371-A	0.1026	3E-13		0.024860684	[0.018-0.032] unit increase	Affymetrix [up to 18485882] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs34305371-A	0.0985	1E-39		0.0314	[0.027-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs34305371-A	0.0985	8E-41	(MTAG)	0.0297	[0.025-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs34305371-A	NR	2E-12		7.022	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs34305371-A	NR	1E-8		5.686	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs34305371-A	NR	4E-20		0.047407515	[0.037-0.058] unit increase	Affymetrix [NR]	N
1139	chr1	72733609	72733610	rs34305371	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p31.1	NEGR1	rs34305371-?	NR	4E-16		8.103	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p31.1	NEGR1	rs34305371-?	NR	2E-6		4.715	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs34305371-A	0.096	2E-20		0.036229968	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1139	chr1	72733609	72733610	rs34305371	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	1p31.1	NR	rs34305371-A	0.0945	4E-12		1.0758939	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1139	chr1	72735457	72735458	rs12137231	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs12137231-T	NR	2E-13		0.02150888	[0.016-0.027] unit increase	Affymetrix [NR]	N
1139	chr1	72740072	72740073	rs12127789	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NA	rs12127789-T	0.1194	3E-8	(Male)	1.086	[1.06-1.12]	Affymetrix, Illumina [NR] (imputed)	N
1139	chr1	72744143	72744144	rs3101340	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	1p31.1	NEGR1	rs3101340-G	0.49	1E-9	(model 3)	1.04		Affymetrix [11800000] (imputed)	N
1140	chr1	72744995	72744996	rs1870676	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs1870676-T	NR	5E-9		5.862	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1140	chr1	72747843	72747844	rs3101341	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p31.1	NEGR1	rs3101341-?	NR	6E-9		0.0141587	[0.0094-0.0189] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs66495454-?	NR	4E-14		0.0191221	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p31.1	NEGR1	rs66495454-?	NR	6E-16		0.0204332	[0.015-0.025] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p31.1	NEGR1	rs66495454-?	NR	5E-12	(female)	0.0237443	[0.017-0.03] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs66495454-?	NR	1E-9		0.015486	[0.011-0.02] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	1p31.1	NEGR1	rs66495454-G	0.6231	9E-9	(Adults)	5.747	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1140	chr1	72748567	72748567	rs66495454	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	1p31.1	NEGR1	rs66495454-G	0.6231	9E-9		5.747	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1140	chr1	72749725	72749726	rs76659454	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs76659454-A	0.1764	2E-16	(conditional-joint)	0.0154	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p31.1	NR	rs3128341-T	0.183897	9E-21		0.076398835	[0.06-0.092] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs3128341-T	0.1963	3E-22	(MTAG)	0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs3128341-T	0.2052	4E-30	(MTAG)	0.0323	[0.027-0.038] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p31.1	Intergenic	rs3128341-T	0.2052	3E-21		0.0334	[0.027-0.04] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs3128341-T	NR	2E-20		9.284	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1140	chr1	72749847	72749848	rs3128341	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs3128341-T	NR	2E-17		0.030660488	[0.024-0.038] unit decrease	Affymetrix [NR]	N
1140	chr1	72750352	72750353	rs3101338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.1	Intergenic	rs3101338-A	0.8034	2E-17	(MTAG)	0.0192	[0.015-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1140	chr1	72750352	72750353	rs3101338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p31.1	Intergenic	rs3101338-C	0.1966	6E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1140	chr1	72750352	72750353	rs3101338	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs3101338-A	NR	1E-11		6.796	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1140	chr1	72750469	72750470	rs34361149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.1		rs34361149-A	NR	2E-26		0.0309	[0.025-0.037] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1140	chr1	72750499	72750500	rs11209943	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.1	NEGR1	rs11209943-A	0.396432	9E-38		0.0183431	[0.016-0.021] unit decrease	Affymetrix [12370749]	N
1140	chr1	72750499	72750500	rs11209943	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	1p31.1		rs11209943-A	NR	1E-6		0.00430866	[0.0025-0.0061] years decrease	NR [7400000] (imputed)	N
1140	chr1	72750499	72750500	rs11209943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p31.1		rs11209943-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1140	chr1	72750499	72750500	rs11209943	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NEGR1	rs11209943-A	NR	6E-11		6.546	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	1p31.1	NR	rs3101336-?	NR	4E-7		7.48	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.1	NA	rs3101336-T	0.3825	5E-54		0.0254	[0.022-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs3101336-T	NR	7E-36		0.032	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs3101336-T	NR	3E-17		0.025199484	[0.019-0.031] unit decrease	Affymetrix [NR]	N
1140	chr1	72751184	72751185	rs3101336	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p31.1	NEGR1, LINC01360	rs3101336-C	0.63	1E-29		0.032	[0.026-0.038] unit increase	Illumina [6108953] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	8E-12	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	4E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	3E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	4E-8		0.0389	[0.025-0.053] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	8E-9	(men)	0.0315	[0.021-0.042] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	2E-10		0.0251	[0.017-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	5E-7	(women)	0.023	[0.014-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	2E-12	(men)	0.0332	[0.024-0.042] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	NEGR1	rs3101336-T	0.3916	1E-15		0.0274	[0.021-0.034] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	1p31.1	NEGR1	rs3101336-C	NR	7E-11	(additive model)	0.027	[0.019-0.035] unit increase	NR [9288881] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p31.1	NR	rs3101336-C	NR	4E-8				Affymetrix, Illumina [2499691] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	NEGR1	rs3101336-C	0.614	2E-16	(EA, men)	0.035	[0.026-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1140	chr1	72751184	72751185	rs3101336	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	NEGR1	rs3101336-C	0.613	3E-26	(EA)	0.033	[0.027-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1140	chr1	72751184	72751185	rs3101336	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	NEGR1	rs3101336-C	0.611	9E-17	(EA, women)	0.033	[0.026-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1140	chr1	72751184	72751185	rs3101336	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	NEGR1	rs3101336-C	0.611	6E-26		0.032	[0.026-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1140	chr1	72751184	72751185	rs3101336	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p31.1	NEGR1	rs3101336-T	0.4	5E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.1	NEGR1	rs3101336-C	0.60	2E-8		1.21	[1.13-1.29]	Affymetrix [~ 2000000] (imputed)	N
1140	chr1	72751184	72751185	rs3101336	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	NEGR1	rs3101336-C	0.61	1E-13	(Obesity class II)	1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1140	chr1	72751551	72751552	rs2613499	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p31.1	NR	rs2613499-G	0.199	1E-11		0.0363	[0.026-0.047] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1140	chr1	72751551	72751552	rs2613499	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	NEGR1	rs2613499-A	0.808963	1E-26		0.0185702	[0.015-0.022] unit increase	Affymetrix [12370749]	N
1140	chr1	72752072	72752073	rs12740789	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs12740789-G	0.803	6E-20		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
1140	chr1	72752072	72752073	rs12740789	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs12740789-A	0.178	1E-17	(Conditioned on chr1:73824909)	0.02849727	[0.022-0.035] unit decrease	NR [~ 10000000] (imputed)	N
1140	chr1	72752072	72752073	rs12740789	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	1p31.1	NEGR1	rs12740789-G	0.82089	1E-9		0.046075	[0.031-0.061] unit decrease	Affymetrix [509255] (imputed)	N
1140	chr1	72752229	72752230	rs2815765	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	1p31.1	LRRIQ3, NEGR1	rs2815765-C	0.6344	9E-15		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1140	chr1	72752938	72752939	rs2613498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p31.1		rs2613498-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1140	chr1	72752938	72752939	rs2613498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs2613498-?	NR	4E-40				NR [~ 8900000] (imputed)	N
1140	chr1	72754313	72754314	rs61765651	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1p31.1	NEGR1	rs61765651-C	0.83	1E-8		0.058	[0.038-0.078] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1140	chr1	72754313	72754314	rs61765651	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs61765651-?	NR	2E-38				Affymetrix [~ 8270000] (imputed)	N
1140	chr1	72754313	72754314	rs61765651	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p31.1	NR	rs61765651-T	NR	4E-7	(EA)	0.1346	[0.083-0.187] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1140	chr1	72754787	72754788	rs2613496	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs2613496-C	0.821	4E-17		0.0118521	[0.0091-0.0146] unit increase	NR [9732723] (imputed)	N
1140	chr1	72755104	72755105	rs2568952	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1p31.1	NR	rs2568952-C	NR	5E-11		6.568	NR z score decrease	NR [NR]	N
1140	chr1	72756048	72756049	rs17526367	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	NEGR1	rs17526367-T	NR	2E-18		0.030484155	[0.024-0.037] unit decrease	Affymetrix [NR]	N
1140	chr1	72756048	72756049	rs17526367	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p31.1	NEGR1	rs17526367-?	NR	4E-13		7.27	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1140	chr1	72756048	72756049	rs17526367	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p31.1	NEGR1	rs17526367-?	NR	5E-10		6.227	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1140	chr1	72758983	72758984	rs2613492	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p31.1		rs2613492-?	NR	8E-14				NR [7857346] (imputed)	N
1140	chr1	72762168	72762169	rs2568955	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs2568955-T	0.2481	3E-24		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1140	chr1	72762168	72762169	rs2568955	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs2568955-T	0.2488	6E-10		0.01595942	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1140	chr1	72764288	72764289	rs2815757	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NR	rs2815757-T	0.8089	2E-13		1.057	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1140	chr1	72764288	72764289	rs2815757	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NA	rs2815757-T	0.8089	4E-10	(Male)	1.08	[1.06-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1140	chr1	72764375	72764376	rs2568956	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs2568956-?	NR	2E-8		0.0125973	[0.0077-0.0175] unit increase	Affymetrix [25921788] (imputed)	N
1140	chr1	72764375	72764376	rs2568956	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs2568956-?	NR	2E-8		0.0139906	[0.0091-0.0188] unit decrease	Affymetrix [25921788] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.1		rs2568958-A	NR	4E-23		0.0193	[0.016-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p31.1	NR	rs2568958-A	0.6156	4E-52		1.034	[1.03-1.039]	NR [8098588] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs2568958-A	0.612018932386453	3E-19		0.011401672	[0.0089-0.0139] unit increase	NR [NR]	N
1140	chr1	72765115	72765116	rs2568958	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p31.1	NA	rs2568958-A	0.6177	1E-53		0.0253	[0.022-0.028] unit increase	NR [~ 27400000] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	NEGR1	rs2568958-A	0.61	4E-16	(Overweight)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	1p31.1	NEGR1	rs2568958-A	0.6	2E-14		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1140	chr1	72765115	72765116	rs2568958	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p31.1	NEGR1	rs2568958-A	0.58	2E-8		3.37	[2.19-4.55] percentage SD increase	Illumina [305846]	N
1140	chr1	72765115	72765116	rs2568958	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p31.1	NEGR1	rs2568958-A	0.58	1E-11		3.77	[2.67-4.87] % SD increase	Illumina [305846]	N
1140	chr1	72796512	72796513	rs145279814	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	1p31.1	NR	rs145279814-?	NR	4E-6	(AA)	2.78	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1140	chr1	72806588	72806589	rs145553345	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p31.1	NEGR1	rs145553345-G	NR	7E-7		0.298998	[0.18-0.42] unit decrease	Illumina [at least 950000] (imputed)	N
1140	chr1	72808550	72808551	rs11209947	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	1p31.1	NEGR1	rs11209947-A	0.72178	5E-20		1.17	[1.13-1.21]	Illumina [~ 41266535] (imputed)	N
1140	chr1	72811903	72811904	rs11209948	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs11209948-?	NR	2E-7	(male)	0.13699	[0.085-0.189] unit increase	Affymetrix [7794483] (imputed)	N
1140	chr1	72811903	72811904	rs11209948	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs11209948-?	NR	2E-7		0.11132	[0.069-0.153] unit increase	Affymetrix [7794483] (imputed)	N
1140	chr1	72811903	72811904	rs11209948	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1p31.1	NEGR1	rs11209948-T	0.638888	8E-11		0.0357	[0.024-0.047] unit increase	Illumina [1220000] (imputed)	N
1140	chr1	72812439	72812440	rs2815752	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p31.1	NEGR1	rs2815752-A	0.61	2E-22		0.13	[0.09-0.17] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1140	chr1	72812439	72812440	rs2815752	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	1p31.1	NEGR1	rs2815752-A	0.62	6E-8		0.1	[0.04-0.16] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
1140	chr1	72812746	72812747	rs2568961	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p31.1	NR	rs2568961-T	0.6042	1E-17		0.03615179	[0.028-0.044] unit increase	NR [NR]	N
1140	chr1	72813217	72813218	rs1432639	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1p31.1	NEGR1	rs1432639-A	0.63	5E-15		1.04	[1.03-1.05]	NR [9622763] (imputed)	N
1140	chr1	72814782	72814783	rs2815749	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	1p31.1	NEGR1	rs2815749-A	0.2	1E-10		0.039	unit decrease	NR [2324712] (imputed)	N
1140	chr1	72819883	72819884	rs2613500	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p31.1	NR	rs2613500-T	0.1975	5E-18		0.026889954	[0.021-0.033] unit decrease	Affymetrix [10549349] (imputed)	N
1140	chr1	72823712	72823713	rs990871	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NR	rs990871-T	0.613177273382146	1E-33		0.033314496	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1140	chr1	72823712	72823713	rs990871	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p31.1	NEGR1	rs990871-T	0.61	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1140	chr1	72824859	72824860	rs6687024	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	1p31.1	NR	rs6687024-T	0.623	4E-8		1.034	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1140	chr1	72825143	72825144	rs6699744	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	1p31.1	NR	rs6699744-T	0.612	7E-14		1.0416667	[1.03-1.05]	NR [5276842] (imputed)	N
1140	chr1	72825143	72825144	rs6699744	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p31.1	NEGR1	rs6699744-?	NR	2E-12		0.0176817	[0.013-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1140	chr1	72825143	72825144	rs6699744	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs6699744-T	0.612	2E-13		0.0089	[0.0065-0.0113] unit increase	NR [7666894] (imputed)	N
1140	chr1	72828182	72828183	rs12144335	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	1p31.1	NR	rs12144335-T	0.8166	4E-8		1.0427003	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1140	chr1	72835409	72835410	rs2613505	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p31.1	NA	rs2613505-T	0.8197	1E-13		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	1p31.1		rs7531118-?	NR	1E-8				NR [2625067]	N
1140	chr1	72837238	72837239	rs7531118	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p31.1		rs7531118-?	NR	9E-29		0.0339	unit decrease	NR [NR]	N
1140	chr1	72837238	72837239	rs7531118	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p31.1	NR	rs7531118-C	NR	1E-16		1.0416667		NR [NR] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p31.1	NEGR1	rs7531118-?		1E-15				NR [6786993] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs7531118-T	NR	1E-16		8.287	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p31.1	RPL31P12	rs7531118-T	0.4609	7E-7		0.032	[0.019-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p31.1	RPL31P12	rs7531118-T	0.4609	4E-7		0.0329	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7531118-C	0.5332	1E-6	(women)	0.0255	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7531118-C	0.5392	8E-10	(women)	0.029	[0.02-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	NEGR1	rs7531118-T	0.4436	2E-10	(EA, women)	0.0287	[0.02-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	NEGR1	rs7531118-T	0.4436	1E-7	(EA, men)	0.0256	[0.016-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	NEGR1	rs7531118-T	0.4436	1E-14	(EA)	0.0268	[0.02-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	NEGR1	rs7531118-T	0.4418	6E-10	(EA,women)	0.0295	[0.02-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	NEGR1	rs7531118-T	0.4418	4E-11	(EA)	0.0241	[0.017-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1140	chr1	72837238	72837239	rs7531118	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	NEGR1	rs7531118-C	0.56	2E-17	(Obesity class I)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	RPL31P12	rs11209951-T	NR	4E-17		0.025061874	[0.019-0.031] unit increase	Affymetrix [NR]	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6147	3E-7		0.0394	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6124	8E-7	(EA)	0.0401	[0.024-0.056] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6182	2E-6	(men)	0.0296	[0.017-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6168	2E-11	(EA)	0.0289	[0.02-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6157	2E-7	(EA,women)	0.0289	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6138	9E-11		0.0268	[0.019-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-?	NR	8E-11	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-?	NR	7E-16	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-?	NR	6E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-?	NR	6E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-?	NR	1E-15				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6168	8E-8	(EA, men)	0.0311	[0.02-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6168	7E-11	(EA, women)	0.0326	[0.023-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6168	3E-16	(EA)	0.032	[0.024-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6138	7E-16		0.0297	[0.022-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837489	72837490	rs11209951	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs11209951-T	0.6138	6E-9	(men)	0.0313	[0.021-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1140	chr1	72837499	72837500	rs11209952	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1p31.1	NEGR1	rs11209952-?	NR	1E-8	(female)	0.0192142	[0.013-0.026] unit decrease	Affymetrix [25921788] (imputed)	N
1140	chr1	72838405	72838406	rs10789336	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p31.1	NEGR1	rs10789336-A	0.62	1E-6		0.042	[0.024-0.060] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1140	chr1	72838528	72838529	rs1993709	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	1p31.1	NEGR1	rs1993709-?	NR	5E-6		1.29	[1.16-1.44]	Illumina [~ 41266535] (imputed)	N
1140	chr1	72838528	72838529	rs1993709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p31.1		rs1993709-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1140	chr1	72838528	72838529	rs1993709	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	1p31.1	NR	rs1993709-A	0.1811	1E-13		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1140	chr1	72838528	72838529	rs1993709	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.1	NA	rs1993709-A	0.1805	1E-52		0.0317	[0.028-0.036] unit decrease	NR [~ 27400000] (imputed)	N
1140	chr1	72838528	72838529	rs1993709	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p31.1	NEGR1	rs1993709-G	0.81	5E-13		1.38	[1.26-1.50]	Affymetrix [~ 2000000] (imputed)	N
1140	chr1	72839773	72839774	rs2613503	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p31.1	NR	rs2613503-C	0.1988	7E-11		0.0392	[0.027-0.051] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1140	chr1	72839773	72839774	rs2613503	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p31.1	LOC100132353/KRT8P21	rs2613503-A	0.801866	3E-7		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1140	chr1	72839773	72839774	rs2613503	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p31.1	LOC100132353/KRT8P21	rs2613503-A	0.801866	4E-8		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1140	chr1	72839773	72839774	rs2613503	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p31.1	intergenic	rs2613503-A	0.8334	2E-10		0.0178	[0.012-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1140	chr1	72844513	72844514	rs2999987	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p31.1	RPL31P12	rs2999987-T	NR	3E-16		0.030808667	[0.023-0.038] unit increase	Affymetrix [NR]	N
1140	chr1	72852985	72852986	rs527320094	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	1p31.1	LOC105378797	rs527320094-C	2.3E-4	5E-9		2.77	[1.81-3.74]	NR [10849711] (imputed)	N
1140	chr1	72861566	72861567	rs1460939	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p31.1	NR	rs1460939-T	0.803141489624633	6E-10		0.009239389	[0.0063-0.0122] unit increase	NR [NR]	N
1140	chr1	72861566	72861567	rs1460939	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p31.1	NR	rs1460939-T	0.803141489624633	1E-8		0.009797679	[0.0064-0.0132] unit increase	NR [NR]	N
1141	chr1	72878663	72878664	rs72684636	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs72684636-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1141	chr1	72882342	72882343	rs7532281	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs7532281-?	NR	5E-10		0.0153482	[0.011-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1141	chr1	72885280	72885281	rs2590942	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	1p31.1		rs2590942-?	NR	6E-9		0.0413	[0.015-0.067] unit increase	NR [NR] (imputed)	N
1141	chr1	72885280	72885281	rs2590942	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p31.1	NEGR1	rs2590942-T	0.82	2E-7		0.047	[0.029-0.065] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1141	chr1	72887401	72887402	rs111991969	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p31.1	NEGR1	rs111991969-C	0.926878	2E-9		0.0245673	[0.017-0.033] unit decrease	NR [16516521] (imputed)	N
1141	chr1	72900405	72900406	rs80054503	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs80054503-C	0.116	3E-9	(Conditioned on chr1:71490122, chr1:72752073, chr1:73824909)	0.024137683	[0.016-0.032] unit decrease	NR [~ 10000000] (imputed)	N
1141	chr1	72904287	72904288	rs12724444	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs12724444-?	NR	8E-8		5.373	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1141	chr1	72905880	72905881	rs7524249	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	1p31.1	NR	rs7524249-A	0.8	3E-6		0.076	[0.045-0.107] unit decrease	NR [9260588] (imputed)	N
1141	chr1	72919498	72919499	rs75593079	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p31.1	NR	rs75593079-G	0.0497018	1E-8		0.08186696	[0.054-0.11] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1141	chr1	72927339	72927340	rs113364618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.1	Intergenic	rs113364618-A	0.0436	7E-10	(MTAG)	0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1141	chr1	72927339	72927340	rs113364618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p31.1	Intergenic	rs113364618-G	0.9564	9E-10		0.0293	[0.02-0.039] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1141	chr1	72940272	72940273	rs10789340	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and major depressive disorder	46,802 European ancestry asthma cases, 59,851 European ancestry major depressive disorder cases, 460,635 European ancestry controls	NA	1p31.1	NEGR1	rs10789340-?	NR	3E-8				Affymetrix [up to 13554551] (imputed)	N
1141	chr1	72940272	72940273	rs10789340	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NA	rs10789340-G	0.6275	5E-8	(Female)	1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1141	chr1	72940272	72940273	rs10789340	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs10789340-G	0.6236	2E-12		0.0086	[0.0062-0.011] unit increase	NR [7666894] (imputed)	N
1141	chr1	72940272	72940273	rs10789340	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1p31.1	NR	rs10789340-G	0.6488	3E-12		0.0155	[0.011-0.02] unit increase	Illumina [NR] (imputed)	N
1141	chr1	72940272	72940273	rs10789340	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	1p31.1	NR	rs10789340-G	0.6488	1E-13		0.0185	[0.014-0.023] unit increase	Illumina [NR] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs7550173-A	NR	3E-24		0.027	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.643	2E-10	(men)	0.0404	[0.028-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6402	2E-10	(EA)	0.0281	[0.019-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6315999999999999	3E-10		0.0265	[0.018-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-?	NR	9E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-?	NR	8E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-?	NR	4E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-?	NR	2E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6402	7E-13	(EA)	0.0283	[0.021-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6402	4E-9	(EA, men)	0.0344	[0.023-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6402	2E-6	(EA, women)	0.0244	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6315999999999999	4E-13		0.027	[0.02-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72944616	72944617	rs7550173	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	KRT8P21, NEGR1	rs7550173-T	0.6315999999999999	3E-11	(men)	0.0364	[0.026-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1141	chr1	72945127	72945128	rs782214	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p31.1	NR	rs782214-G	0.196566880117919	5E-11		0.012268039	[0.0086-0.0159] unit decrease	NR [NR]	N
1141	chr1	72945665	72945666	rs782212	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	1p31.1	NR	rs782212-T	NR	7E-11		6.516477	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1141	chr1	72945761	72945762	rs61491549	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs61491549-T	NR	2E-9		6.027	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1141	chr1	72953250	72953251	rs782207	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p31.1	NR	rs782207-A	0.367748845241078	2E-14		0.007289038	[0.0054-0.0092] unit decrease	NR [NR]	N
1141	chr1	72955161	72955162	rs183059614	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1p31.1		rs183059614-G	0.0013228	1E-6		0.44528	[0.26-0.63] unit decrease	Affymetrix [15580782] (imputed)	N
1141	chr1	72960010	72960011	rs1445591	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs1445591-A	0.6986	4E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1141	chr1	72964316	72964317	rs10493500	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p31.1	NEGR1, LINC01360	rs10493500-G		4E-9		0.975	[NR]	Affymetrix [up to 79000000] (imputed)	N
1141	chr1	72986135	72986136	rs12028229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs12028229-T	0.2631	2E-9		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1141	chr1	72986135	72986136	rs12028229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs12028229-T	0.2631	2E-8	(MTAG)	0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1141	chr1	72992855	72992856	rs1775370	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p31.1	NEGR1	rs1775370-T	0.2479	2E-9		0.013873694	[0.0093-0.0184] unit decrease	Affymetrix [11514654] (imputed)	N
1142	chr1	73025078	73025079	rs12142193	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	1p31.1	NEGR1	rs12142193-?	NR	5E-10		0.0326842	[0.022-0.043] unit decrease	Affymetrix [25921788] (imputed)	N
1143	chr1	73173905	73173906	rs17093334	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs17093334-?	NR	5E-7				Affymetrix [NR]	N
1143	chr1	73187835	73187836	rs77483376	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs77483376-A	0.9409	2E-13	(MTAG)	0.036	[0.026-0.046] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1143	chr1	73187835	73187836	rs77483376	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs77483376-?	NR	9E-6		4.452	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1143	chr1	73195559	73195560	rs12141660	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs12141660-T	0.291600759981651	7E-9		0.008071836	[0.0053-0.0108] unit increase	NR [NR]	N
1143	chr1	73229207	73229208	rs17615090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p31.1	NR	rs17615090-G	0.168	7E-14		0.0146176	[0.011-0.018] unit increase	NR [9732723] (imputed)	N
1143	chr1	73234828	73234829	rs2422286	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs2422286-A	0.178447636600507	2E-8		0.009013462	[0.0059-0.0121] unit decrease	NR [NR]	N
1144	chr1	73278614	73278615	rs35998080	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	1p31.1		rs35998080-?	NR	3E-8		0.0166	NR unit increase	NR [4484088] (imputed)	N
1144	chr1	73278614	73278615	rs35998080	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1p31.1	NR	rs35998080-?		4E-9				NR [8377093]	N
1144	chr1	73278614	73278615	rs35998080	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p31.1	KRT8P21	rs35998080-T	NR	7E-10	(EA)	1.0718113	[1.05-1.09]	Illumina [6627481] (imputed)	N
1144	chr1	73278614	73278615	rs35998080	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p31.1	LINC01360	rs35998080-T		1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1144	chr1	73278614	73278615	rs35998080	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs35998080-T	NR	8E-11		1.07	[NR]	Illumina [7158791] (imputed)	N
1144	chr1	73279822	73279823	rs190891254	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs190891254-C	0.816	1E-16		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
1144	chr1	73293331	73293332	rs2422320	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (self-reported)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 75,607 European ancestry self-reported major depressive disorder cases, 231,747 European ancestry self-reported major depressive disorder controls	322,580 individuals	1p31.1	NEGR1	rs2422320-T	0.43	2E-11				Affymetrix, Illumina [at least 918921] (imputed)	N
1144	chr1	73293392	73293393	rs2422321	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1p31.1	NEGR1	rs2422321-G	0.441006	3E-8		0.0308	[0.019-0.043] unit increase	Illumina [1220000] (imputed)	N
1144	chr1	73302707	73302708	rs77159347	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	RP4-660H19.1	rs77159347-T	0.08596	2E-8		0.02037463	[0.013-0.028] unit increase	Affymetrix [up to 18485882] (imputed)	N
1144	chr1	73309081	73309082	rs12129942	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs12129942-T	0.5146	2E-7		0.0061	[0.0037-0.0085] unit increase	NR [7666894] (imputed)	N
1144	chr1	73321796	73321797	rs7519251	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1p31.1	NR	rs7519251-A	NR	6E-11		6.544	NR z score decrease	NR [NR]	N
1144	chr1	73366411	73366412	rs10789347	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	1p31.1	RP4-660H19.1	rs10789347-?	NR	6E-7	(AA)	0.0192	[0.0062-0.0322] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1144	chr1	73366411	73366412	rs10789347	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	1p31.1	RP4-660H19.1	rs10789347-?	NR	3E-9		0.01433	[0.0061-0.0225] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr1	73422142	73422143	rs114628552	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p31.1	NR	rs114628552-?	NR	4E-6		10666.176	NR unit decrease	Illumina [2379855]	N
1145	chr1	73446244	73446245	rs4233093	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	1p31.1	NR	rs4233093-A	0.516179	8E-7		0.0050554	[0.0031-0.0071] unit increase	Affymetrix [7736308] (imputed)	N
1145	chr1	73446244	73446245	rs4233093	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	1p31.1	NEGR1	rs4233093-A	0.52	5E-9		1.024	[1.016-1.032]	Affymetrix [7736308] (imputed)	N
1145	chr1	73446244	73446245	rs4233093	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	1p31.1	NR	rs4233093-A	0.51	3E-8		0.03	[0.02-0.04] unit increase	Affymetrix [NR] (imputed)	N
1145	chr1	73446703	73446704	rs12724536	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs12724536-A	0.521509830988772	5E-12		0.008714355	[0.0062-0.0112] unit increase	NR [NR]	N
1145	chr1	73516571	73516572	rs11210111	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs11210111-A	0.4617	5E-8		0.0064	[0.004-0.0088] unit decrease	NR [7666894] (imputed)	N
1145	chr1	73517426	73517427	rs140438467	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	1p31.1	NR	rs140438467-?	NR	4E-6		0.5862	[0.32-0.86] unit decrease	Illumina [at least 560000] (imputed)	N
1146	chr1	73615891	73615892	rs12142680	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs12142680-A	0.0869	9E-10		0.026271254	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1146	chr1	73626752	73626753	rs6659790	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	1p31.1	KRT8P21, LRRIQ3	rs6659790-T	0.07	9E-7		1.19	[0.72-1.66] unit decrease	Illumina [8257341] (imputed)	N
1146	chr1	73635890	73635891	rs12755164	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs12755164-A	NR	4E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1146	chr1	73651203	73651204	rs4274014	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs4274014-C	0.508	1E-21		0.011	[0.009-0.013] unit decrease	NR [NR] (imputed)	N
1146	chr1	73651518	73651519	rs12034885	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	1p31.1	NR	rs12034885-?	NR	3E-6		0.0401	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1146	chr1	73655820	73655821	rs11210177	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs11210177-A	0.5	3E-6		1.08	[-0.978-3.138]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73664021	73664022	rs6424532	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs6424532-A	0.4856	4E-8		0.0065	[0.0041-0.0089] unit increase	NR [7666894] (imputed)	N
1147	chr1	73668835	73668836	rs10890020	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs10890020-A	0.52	5E-6		1.06	[-1.0176-3.1376]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73668835	73668836	rs10890020	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p31.1	NR	rs10890020-G	0.4844	3E-34		1.026694	[1.02-1.03]	NR [8098588] (imputed)	N
1147	chr1	73668881	73668882	rs10890021	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs10890021-T	0.52	5E-6		1.07	[-1.0076-3.1476]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73678453	73678454	rs12092858	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12092858-A	0.52	5E-6		1.06	[-1.0176-3.1376]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73678887	73678888	rs12024899	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12024899-A	0.32	2E-6		1.0752687	[-1.04153-3.19207]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73685993	73685994	rs4261072	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs4261072-A	0.52	5E-6		1.03	[-1.0476-3.1076]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73706711	73706712	rs4650205	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs4650205-A	0.48	5E-6		1.0638298	[-0.99417-3.12183]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73714713	73714714	rs12030954	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12030954-A	0.32	2E-6		1.0526316	[-1.00537-3.11063]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73715232	73715233	rs11210187	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs11210187-T	0.52	4E-6		1.0	[-1.0972-3.0972]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73715232	73715233	rs11210187	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs11210187-C	0.496046576363303	2E-12		0.009068976	[0.0065-0.0116] unit increase	NR [NR]	N
1147	chr1	73715232	73715233	rs11210187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1p31.1		rs11210187-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1147	chr1	73720576	73720577	rs4650206	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs4650206-T	0.52	4E-6		1.06	[-0.998-3.118]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73720576	73720577	rs4650206	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p31.1	NR	rs4650206-C	0.488	5E-16		0.0118597	[0.009-0.0147] unit decrease	NR [9732723] (imputed)	N
1147	chr1	73722459	73722460	rs4074990	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs4074990-C	0.52	4E-6		1.04	[-0.9788-3.0588]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73722459	73722460	rs4074990	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	1p31.1	NR	rs4074990-G	0.503682	4E-7		1.073	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1147	chr1	73725997	73725998	rs12136984	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1p31.1	NR	rs12136984-T	0.5108	9E-15		0.032059785	[0.024-0.04] unit decrease	NR [NR]	N
1147	chr1	73725997	73725998	rs12136984	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	1p31.1	NR	rs12136984-T	0.4662	5E-9		0.063813604	[0.042-0.085] unit decrease	NR [NR]	N
1147	chr1	73725997	73725998	rs12136984	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12136984-T	0.51	5E-6		1.03	[-1.0084-3.0684]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73736561	73736562	rs4571923	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	1p31.1	NR	rs4571923-?		4E-11				NR [520857]	N
1147	chr1	73749282	73749283	rs11210195	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p31.1	KRT8P21	rs11210195-C	NR	2E-9		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
1147	chr1	73749282	73749283	rs11210195	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p31.1	LRRIQ3	rs11210195-C	NR	2E-9		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1147	chr1	73749282	73749283	rs11210195	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p31.1	LINC01360	rs11210195-?		4E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1147	chr1	73750875	73750875	rs34224300	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs34224300-TA	0.32	2E-6		1.010101	[-1.0087-3.0289]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73755782	73755783	rs10890030	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1p31.1	NR	rs10890030-T	0.4533	6E-11		0.07150073	[0.05-0.093] unit decrease	NR [NR]	N
1147	chr1	73758116	73758117	rs7523829	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p31.1		rs7523829-?	NR	2E-24		0.0276	unit increase	NR [NR]	N
1147	chr1	73758116	73758117	rs7523829	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p31.1	NR	rs7523829-A	0.485315798350422	7E-10		0.00566142	[0.0039-0.0075] unit increase	NR [NR]	N
1147	chr1	73765267	73765268	rs28685835	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs28685835-C	0.68	2E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
1147	chr1	73768021	73768022	rs12023347	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	1p31.1	LRRIQ3, LINC01360	rs12023347-T	NR	9E-9	(EA)			Affymetrix [at least 723305] (imputed)	N
1147	chr1	73768365	73768366	rs12129573	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.1		rs12129573-?	NR	2E-8				NR [NR]	N
1147	chr1	73768365	73768366	rs12129573	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	1p31.1		rs12129573-?	NR	5E-9		1.04896	[1.03-1.07]	NR [NR]	N
1147	chr1	73768365	73768366	rs12129573	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p31.1	Intergenic	rs12129573-?		5E-17				NR [6786993] (imputed)	N
1147	chr1	73768365	73768366	rs12129573	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1p31.1	NR	rs12129573-?	NR	7E-10				Illumina [up to 5582932] (imputed)	N
1147	chr1	73768365	73768366	rs12129573	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1p31.1	LINC01360	rs12129573-A	0.37	4E-12		1.04	[1.03-1.05]	NR [9622763] (imputed)	N
1147	chr1	73768365	73768366	rs12129573	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1p31.1	LOC101927295	rs12129573-?	NR	9E-15		1.0799136	[1.06-1.10]	Illumina [8000000] (imputed)	N
1147	chr1	73768365	73768366	rs12129573	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1p31.1	LRRIQ3	rs12129573-A	0.358	2E-12		1.078	[1.056-1.101]	Affymetrix, Illumina [9005918] (imputed)	N
1147	chr1	73789323	73789324	rs10890032	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.1		rs10890032-?	NR	3E-8				NR [NR]	N
1147	chr1	73789323	73789324	rs10890032	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	1p31.1		rs10890032-?	NR	6E-11				NR [2625067]	N
1147	chr1	73789323	73789324	rs10890032	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	1p31.1		rs10890032-?	NR	2E-12				NR [2625067]	N
1147	chr1	73789323	73789324	rs10890032	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p31.1	KRT8P21	rs10890032-T	NR	1E-9	(EA)	1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
1147	chr1	73789323	73789324	rs10890032	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs10890032-T	NR	7E-11		1.07	[NR]	Illumina [7158791] (imputed)	N
1148	chr1	73796005	73796006	rs12022895	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1p31.1	NR	rs12022895-T	NR	1E-9		6.109	NR z score decrease	NR [NR]	N
1148	chr1	73801631	73801632	rs6684973	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	1p31.1	LINC01360	rs6684973-G		2E-12		0.935	[NR]	Affymetrix [~ 79000000] (imputed)	N
1148	chr1	73809332	73809333	rs2208564	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs2208564-T	0.32	1E-6		1.0638298	[-0.99417-3.12183]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73814158	73814159	rs10789368	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	1p31.1	NR	rs10789368-A	0.5467	1E-9		0.07337476	[0.05-0.097] unit increase	NR [NR]	N
1148	chr1	73814158	73814159	rs10789368	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	1p31.1	NR	rs10789368-?		1E-8				NR [520857]	N
1148	chr1	73816563	73816564	rs1160682	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	1p31.1		rs1160682-?	NR	3E-8				NR [NR]	N
1148	chr1	73824908	73824909	rs10789369	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs10789369-G	0.615	4E-27		0.0119275	[0.0098-0.0141] unit decrease	NR [9732723] (imputed)	N
1148	chr1	73824908	73824909	rs10789369	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs10789369-G	0.615	3E-19		0.023448382	[0.018-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1148	chr1	73824908	73824909	rs10789369	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	1p31.1	intergenic	rs10789369-A	0.383	4E-10		1.095	[1.07-1.12]	Affymetrix, Illumina [9871789]	N
1148	chr1	73829127	73829128	rs1923216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p31.1		rs1923216-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1148	chr1	73829222	73829223	rs1923217	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1p31.1	NR	rs1923217-T	NR	2E-12		7.027	NR z score decrease	NR [NR]	N
1148	chr1	73835776	73835777	rs2340403	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p31.1	LRRIQ3	rs2340403-T	0.6263	2E-11		0.0140000945	[0.0099-0.0181] unit decrease	Affymetrix [11514654] (imputed)	N
1148	chr1	73837957	73837958	rs6677536	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p31.1	LINC01360	rs6677536-A	0.6213	4E-8		0.0553	[0.036-0.075] unit increase	NR [9744772] (imputed)	N
1148	chr1	73848609	73848610	rs61767420	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	1p31.1	NR	rs61767420-A	0.3999	1E-8		5.714	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1148	chr1	73848609	73848610	rs61767420	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	1p31.1	NR	rs61767420-A	0.4128	2E-8		5.601	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1148	chr1	73848630	73848631	rs11581459	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p31.1	LINC01360, LRRIQ3	rs11581459-A		2E-16		1.03	[NR]	Affymetrix [up to 79000000] (imputed)	N
1148	chr1	73851686	73851687	rs6671130	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	1p31.1	NR	rs6671130-G	0.5974	4E-8		0.011673218	[0.0075-0.0159] unit decrease	Affymetrix [10613246] (imputed)	N
1148	chr1	73851686	73851687	rs6671130	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1p31.1	NR	rs6671130-G	0.601	4E-9		0.00808366	[0.0054-0.0108] unit decrease	NR [~ 9732723] (imputed)	N
1148	chr1	73859289	73859290	rs11210228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs11210228-T	0.4356	2E-8		0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1148	chr1	73860027	73860028	rs11210229	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p31.1		rs11210229-A	0.384	2E-16		0.017	[0.013-0.021] unit increase	Affymetrix [up to 90000000] (imputed)	N
1148	chr1	73862383	73862383	rs5775181	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs5775181-C	0.67	1E-6		1.0	[-1.0776-3.0776]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73864194	73864195	rs12567259	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12567259-A	0.67	1E-6		1.07	[-0.9488-3.0888]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73867435	73867436	rs1923242	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs1923242-C	0.67	2E-6		1.04	[-0.9788-3.0588]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73868385	73868386	rs1923243	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	1p31.1	LRRIQ3	rs1923243-?	NR	2E-10		1.049	[1.034-1.065]	Illumina [13763073] (imputed)	N
1148	chr1	73872884	73872885	rs7543202	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.1	intergenic	rs7543202-A	0.3771	3E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix [18391927] (imputed)	N
1148	chr1	73873523	73873524	rs9633290	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs9633290-G	0.68	1E-6		1.03	[-1.028-3.088]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73873524	73873525	rs9633294	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs9633294-C	0.68	1E-6		1.05	[-1.008-3.108]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73873535	73873536	rs9633295	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs9633295-G	0.68	1E-6		1.06	[-0.998-3.118]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73882477	73882478	rs1475064	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1p31.1	LRRIQ3	rs1475064-G	0.615	4E-8		0.0121	[0.0078-0.0164] unit decrease	Illumina [~ 250000] (imputed)	N
1148	chr1	73882879	73882880	rs1475065	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p31.1	NR	rs1475065-G	0.673	1E-12		0.0116659	[0.0084-0.0149] unit decrease	NR [9732723] (imputed)	N
1148	chr1	73894510	73894511	rs12563453	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs12563453-T	0.33	2E-6		1.010101	[-1.0871-3.1073]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73894767	73894768	rs56060088	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	1p31.1	NR	rs56060088-?	NR	3E-6		0.0402	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1148	chr1	73899741	73899742	rs1572668	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1p31.1	Intergenic	rs1572668-G	0.48	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1148	chr1	73901769	73901769	rs61177670	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs61177670-CA	0.53	3E-6		1.1111112	[-0.96649-3.18871]	Affymetrix [at least 143006] (imputed)	N
1148	chr1	73916647	73916648	rs11807366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p31.1	Intergenic	rs11807366-A	0.4097	1E-11	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1148	chr1	73916647	73916648	rs11807366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p31.1	Intergenic	rs11807366-A	0.4097	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1149	chr1	73936359	73936360	rs640561	34728798	Sanchez-Roige S	2021-11-02	Mol Psychiatry	Genome-wide association study of problematic opioid prescription use in 132,113 23andMe research participants of European ancestry.	Problematic opioid prescription use	27,805 European ancestry cases, 104,308 European ancestry controls	NA	1p31.1		rs640561-T	NR	4E-8		5.51	z score increase	Illumina [11311983] (imputed)	N
1149	chr1	73957814	73957815	rs61765555	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NR	rs61765555-C	0.7448	4E-11		1.0460252	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1149	chr1	73957814	73957815	rs61765555	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs61765555-C	NR	9E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1149	chr1	73972993	73972994	rs7530705	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p31.1	NR	rs7530705-A	0.845	3E-9		0.0179039	[0.012-0.024] unit decrease	NR [9732723] (imputed)	N
1149	chr1	73975757	73975758	rs7534840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs7534840-A	0.3962	2E-14	(MTAG)	0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1149	chr1	73978571	73978572	rs74091672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs74091672-A	0.8881	6E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1149	chr1	73978571	73978572	rs74091672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs74091672-A	0.8881	4E-13	(MTAG)	0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1149	chr1	73983072	73983073	rs11210274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p31.1	Intergenic	rs11210274-G	0.3963	2E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1149	chr1	73997623	73997624	rs10890045	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1p31.1	NR	rs10890045-C	0.7042	7E-7		0.0064	[0.0039-0.0089] unit decrease	NR [7666894] (imputed)	N
1149	chr1	74014129	74014130	rs75553467	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	1p31.1		rs75553467-C	0.059	6E-6		0.233071	[0.13-0.33] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
1149	chr1	74054059	74054060	rs2341260	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	1p31.1	LRRIQ3	rs2341260-T	NR	4E-6	(Continuous Variable)	0.05	[0.03-0.07] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1150	chr1	74082374	74082375	rs6424555	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs6424555-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1150	chr1	74083034	74083035	rs2341263	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	1p31.1	LRRIQ3	rs2341263-C		3E-6		0.04	[0.02-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1150	chr1	74110648	74110649	rs10157802	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1p31.1	NEGR1, LRRIQ3	rs10157802-G	0.18000000000000005	7E-6	(African)	1.2820514		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1150	chr1	74161794	74161795	rs12145291	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs12145291-T	0.9409	2E-8		0.028601905	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1150	chr1	74167280	74167281	rs9425020	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p31.1	NR	rs9425020-T	0.104374	3E-8		0.06356012	[0.041-0.086] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1150	chr1	74184349	74184350	rs12032969	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs12032969-T	0.6539	4E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr1	74184408	74184409	rs2341264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs2341264-T	0.4115	6E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1151	chr1	74251124	74251125	rs4147207	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p31.1	NR	rs4147207-?	NR	2E-7				NR [NR] (imputed)	N
1152	chr1	74339166	74339167	rs11210359	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	1p31.1	LRRIQ3	rs11210359-?	NR	8E-6				Affymetrix [302482]	N
1152	chr1	74346916	74346917	rs115523263	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1p31.1	NR	rs115523263-G	0.02	1E-6		1.423	[0.85-2] unit increase	Affymetrix [27624732] (imputed)	N
1152	chr1	74378016	74378017	rs149274654	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs149274654-C	0.0367	1E-10	(MTAG)	0.0241	[0.017-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1152	chr1	74382372	74382373	rs138922423	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	1p31.1	NR	rs138922423-?		3E-6		16.02	[4.99-51.46]	Illumina [NR] (imputed)	N
1152	chr1	74385847	74385848	rs1340425	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	1p31.1	Intergenic	rs1340425-?	NR	8E-6		1.63103	[1.28704-2.06695]	Illumina [~ 5900000] (imputed)	N
1153	chr1	74490458	74490459	rs11210400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs11210400-A	0.538	2E-17		0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1153	chr1	74560410	74560411	rs10789387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs10789387-A	0.5379	7E-16	(conditional-joint)	0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1153	chr1	74563904	74563905	rs7534577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs7534577-A	0.3949	2E-12	(MTAG)	0.0118	[0.0085-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1153	chr1	74563904	74563905	rs7534577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs7534577-A	0.3963	7E-19	(MTAG)	0.0119	[0.0094-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1154	chr1	74623972	74623973	rs115427296	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p31.1	NR	rs115427296-?	NR	4E-8				Illumina [7760689] (imputed)	N
1154	chr1	74653177	74653178	rs7531271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p31.1		rs7531271-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1154	chr1	74678284	74678285	rs485929	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	1p31.1	NR	rs485929-A	0.61	4E-10		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1154	chr1	74678284	74678285	rs485929	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	1p31.1	FPGT, FPGT-TNNI3K, TNNI3K	rs485929-G	0.39	4E-8		0.0060822	[0.0039-0.0082] unit increase	NR [16367095] (imputed)	N
1154	chr1	74678284	74678285	rs485929	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs485929-A	0.6111	5E-9	(MTAG)	0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1154	chr1	74708558	74708559	rs114134414	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of medical pain (dental)	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	1p31.1	NR	rs114134414-C	0.03	9E-7		2.15	unit increase	Illumina [8591557] (imputed)	N
1156	chr1	74858723	74858724	rs1569092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs1569092-A	0.152	2E-16		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1156	chr1	74858723	74858724	rs1569092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs1569092-A	0.152	6E-16	(MTAG)	0.0148	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr1	74867798	74867799	rs146254978	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	1p31.1	FPGT, TNNI3K	rs146254978-T	0.98	5E-8		0.0692	[0.045-0.094] unit decrease	Affymetrix [11535925] (imputed)	N
1156	chr1	74878252	74878253	rs699844	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p31.1	NR	rs699844-A	0.9195	4E-8		1.062	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1156	chr1	74955060	74955061	rs61776255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs61776255-C	0.9587	1E-10	(MTAG)	0.037	[0.026-0.048] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1157	chr1	74977424	74977425	rs953567	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs953567-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1157	chr1	74977424	74977425	rs953567	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p31.1	NA	rs953567-A	0.5903	2E-28		0.0184	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1157	chr1	74977869	74977870	rs1040070	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	1p31.1	FPGT, TNNI3K	rs1040070-?	NR	2E-12		0.031	[0.040-0.022] unit decrease	Illumina [12039492]	N
1157	chr1	74979125	74979126	rs146823532	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1p31.1	FPGT-TNNI3K, TNNI3K	rs146823532-A	0.87	4E-7		0.14	[0.085-0.195] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1157	chr1	74983834	74983835	rs10493544	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p31.1	NR	rs10493544-T	NR	2E-11	(EA)	0.1321	[0.093-0.171] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1157	chr1	74984360	74984361	rs61778068	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs61778068-A	0.9653	2E-12	(MTAG)	0.0318	[0.023-0.041] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1157	chr1	74991401	74991402	rs1514177	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	1p31.1		rs1514177-G	NR	2E-6		0.00328093	[0.0019-0.0047] years decrease	NR [7400000] (imputed)	N
1157	chr1	74991401	74991402	rs1514177	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1p31.1		rs1514177-G	NR	6E-11		0.021518093	[0.015-0.028] years increase	NR [7400000] (imputed)	N
1157	chr1	74991401	74991402	rs1514177	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.1	NA	rs1514177-C	0.4255	8E-30		0.0184	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
1157	chr1	74991401	74991402	rs1514177	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.1	NA	rs1514177-C	0.4255	8E-30		0.0184	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
1157	chr1	74991401	74991402	rs1514177	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	TNNI3K	rs1514177-C	0.43	5E-9	(Obesity class I)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1157	chr1	74991595	74991596	rs1514176	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs1514176-A	0.58	8E-14		0.019300157	[0.014-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1157	chr1	74991643	74991644	rs1514175	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1p31.1	TNNI3K	rs1514175-G	0.575	2E-10		0.0138	[0.0095-0.0181] unit decrease	Illumina [~ 250000] (imputed)	N
1157	chr1	74991643	74991644	rs1514175	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1p31.1	TNNI3K	rs1514175-G	0.57	5E-9		0.011	[0.0051-0.0169] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1157	chr1	74991643	74991644	rs1514175	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1p31.1	TNNI3K	rs1514175-A	0.43	3E-11		0.06	[0.042-0.078] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1157	chr1	74991643	74991644	rs1514175	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p31.1	TNNI3K	rs1514175-A	0.43	8E-14		0.07	[0.03-0.11] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1157	chr1	74992545	74992546	rs6604866	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	TNNI3K	rs6604866-C	0.5564	4E-10	(EA)	0.0222	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr1	74992545	74992546	rs6604866	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	TNNI3K	rs6604866-C	0.5564	3E-7	(EA,women)	0.0239	[0.015-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs1514174-C	0.436	5E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p31.1		rs1514174-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	1p31.1	TNNI3K, C1orf173, CRYZ, LRRIQ3, TYW3, FPGT, FPGT-TNNI3K	rs1514174-C	0.43	1E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x age interaction	up to 112,279 European ancestry individuals aged <50, up to 197,610 European ancestry individuals aged >50	NA	1p31.1	TNNI3K, C1orf173, CRYZ, LRRIQ3, TYW3, FPGT, FPGT-TNNI3K	rs1514174-C	0.43	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	1p31.1	TNNI3K, C1orf173, CRYZ, LRRIQ3, TYW3, FPGT, FPGT-TNNI3K	rs1514174-C	0.43	3E-15		0.039	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	TNNI3K, C1orf173, CRYZ, LRRIQ3, TYW3, FPGT, FPGT-TNNI3K	rs1514174-C	0.43	4E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	TNNI3K	rs1514174-C	0.44	1E-8	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1157	chr1	74993062	74993063	rs1514174	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	1p31.1	TNNI3K	rs1514174-C	0.47	6E-6	(Pubertal growth, females)	0.08	[0.045-0.115] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr1	74993317	74993318	rs7526762	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	1p31.1	NR	rs7526762-A	0.68	2E-7		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1157	chr1	74993317	74993318	rs7526762	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	TNNI3K	rs7526762-A	0.4599	6E-8		0.0218	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74993317	74993318	rs7526762	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7526762-?	NR	4E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74993317	74993318	rs7526762	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7526762-?	NR	3E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74993317	74993318	rs7526762	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7526762-A	0.4599	4E-10		0.0222	[0.015-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74993720	74993721	rs4650277	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p31.1	ERICH3	rs4650277-A	0.4344	6E-12		0.01508202	[0.011-0.019] unit increase	Affymetrix [11514654] (imputed)	N
1157	chr1	74995224	74995225	rs7551507	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	TNNI3K	rs7551507-C	0.44299999999999995	4E-8	(EA)	0.0229	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74995224	74995225	rs7551507	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	TNNI3K	rs7551507-C	0.4416	9E-9	(EA,women)	0.0305	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74995224	74995225	rs7551507	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7551507-?	NR	2E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74995224	74995225	rs7551507	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7551507-C	0.44299999999999995	5E-9	(EA, women)	0.0281	[0.019-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74995224	74995225	rs7551507	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs7551507-C	0.44299999999999995	1E-9	(EA)	0.0228	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	74997761	74997762	rs12042908	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1p31.1	FPGT-TNNI3K, TNNI3K	rs12042908-A	0.46	3E-14		0.059	[0.043-0.075] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1157	chr1	74997761	74997762	rs12042908	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.1	TNNI3K	rs12042908-A	0.437703	3E-84		0.0274603	[0.025-0.03] unit increase	Affymetrix [12370749]	N
1157	chr1	74997761	74997762	rs12042908	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs12042908-A	NR	1E-17		0.022	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1157	chr1	75000417	75000418	rs5775241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.1		rs5775241-C	NR	7E-15		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1157	chr1	75000417	75000418	rs5775241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.1		rs5775241-C	NR	1E-20		0.0202	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1157	chr1	75001473	75001474	rs7525548	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p31.1	TNNI3K, FPGT	rs7525548-A	0.437398	3E-12		0.0145196	[0.01-0.019] unit decrease	NR [16516521] (imputed)	N
1157	chr1	75001473	75001474	rs7525548	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs7525548-T	0.564	5E-19		0.0096699	[0.0075-0.0118] unit decrease	NR [9732723] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p31.1	FPGT-TNNI3K, TNNI3K	rs12566985-A	0.53	6E-19		0.025	[0.019-0.031] unit decrease	Illumina [6108953] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	TNNI3K	rs12566985-A	0.5312	8E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	TNNI3K	rs12566985-A	0.5312	7E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	TNNI3K	rs12566985-A	0.5312	3E-7	(women)	0.0219	[0.013-0.03] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	TNNI3K	rs12566985-A	0.5312	2E-8		0.0184	[0.012-0.025] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p31.1	NR	rs12566985-G	NR	2E-10				Affymetrix, Illumina [2499691] (imputed)	N
1157	chr1	75002192	75002193	rs12566985	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FPGT-TNNI3K	rs12566985-G	0.455	2E-15		0.024	[0.018-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr1	75002192	75002193	rs12566985	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FPGT-TNNI3K	rs12566985-G	0.448	1E-7	(EA, men)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr1	75002192	75002193	rs12566985	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FPGT-TNNI3K	rs12566985-G	0.446	3E-15	(EA)	0.024	[0.018-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr1	75002192	75002193	rs12566985	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FPGT-TNNI3K	rs12566985-G	0.444	1E-11	(EA, women)	0.027	[0.019-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1157	chr1	75003499	75003500	rs12041852	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	1p31.1	NR	rs12041852-?	NR	1E-13		9.774	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
1157	chr1	75003499	75003500	rs12041852	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p31.1	TNNI3K	rs12041852-G	0.46	2E-10		0.046	[0.032-0.06] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1157	chr1	75005066	75005067	rs7553348	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p31.1		rs7553348-G	0.438	5E-12		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
1157	chr1	75005066	75005067	rs7553348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p31.1		rs7553348-?	NR	6E-39				NR [~ 8900000] (imputed)	N
1157	chr1	75005066	75005067	rs7553348	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NR	rs7553348-A	0.557550719906602	4E-17		0.022879148	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1157	chr1	75005237	75005238	rs7553158	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p31.1	FPGT-TNNI3K, TNNI3K	rs7553158-G		5E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
1157	chr1	75005237	75005238	rs7553158	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	TNNI3K	rs7553158-G	0.437549	2E-14		0.0105556	[0.0079-0.0133] unit increase	Affymetrix [12370749]	N
1157	chr1	75005237	75005238	rs7553158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs7553158-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1157	chr1	75006719	75006720	rs7514705	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p31.1	TNNI3K, TYW3	rs7514705-C	0.56	2E-16		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1157	chr1	75013053	75013054	rs3843262	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	TNNI3K	rs3843262-A	0.4341	2E-8	(women)	0.0285	[0.019-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	75013053	75013054	rs3843262	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs3843262-?	NR	2E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	75013053	75013054	rs3843262	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	TNNI3K	rs3843262-A	0.4276	6E-9	(women)	0.027	[0.018-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1157	chr1	75013423	75013424	rs140656307	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p31.1	FPGT/TNNI3K, C1orf173	rs140656307-T	0.0	5E-7	(men)	3.19603	[1.95-4.44] unit increase	Illumina [13520550] (imputed)	N
1157	chr1	75014361	75014362	rs10789396	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p31.1	NR	rs10789396-C	0.567	1E-10		0.00966569	[0.0067-0.0126] unit increase	NR [9732723] (imputed)	N
1157	chr1	75026708	75026709	rs11210482	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p31.1	intergenic	rs11210482-G	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1158	chr1	75143253	75143254	rs150733404	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p31.1	C1orf173	rs150733404-G	0.0133472255611233	8E-6	(F_Desulfovibrionaceae_HB)	1.18953	[0.67-1.71] unit decrease	Illumina [7711310] (imputed)	N
1158	chr1	75172651	75172652	rs17552114	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs17552114-C	0.04878	1E-9	(CRYZ)	0.4215	NR unit decrease	Illumina [1671387] (imputed)	N
1158	chr1	75175885	75175886	rs3819946	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.1	CRYZ	rs3819946-T	0.86078125	3E-292	(CRYZ, 13983_27_3)	1.1746122	[1.12-1.23] unit decrease	Illumina [> 1000000] (imputed)	N
1158	chr1	75188320	75188321	rs277402	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p31.1		rs277402-?	NR	2E-9		0.0146672	[0.0099-0.0194] unit decrease	Affymetrix [20259828] (imputed)	N
1158	chr1	75189619	75189620	rs61790703	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs61790703-A	0.0662	1E-9	(CRYZ)	0.3619	NR unit decrease	Illumina [1671387] (imputed)	N
1158	chr1	75219065	75219066	rs3845356	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRYZ	5,368 Icelandic ancestry individuals	NA	1p31.1		rs3845356-C	0.4784	2E-168		0.491736	[0.46-0.53] unit increase	Illumina [7506463] (imputed)	N
1158	chr1	75221399	75221400	rs571554716	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1p31.1		rs571554716-C	0.0021447	6E-6		0.32778	[0.19-0.47] unit increase	Affymetrix [15580782] (imputed)	N
1158	chr1	75224559	75224560	rs28594379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.1		rs28594379-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1158	chr1	75226251	75226252	rs28482086	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs28482086-A	0.3494	5E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1158	chr1	75235316	75235317	rs3931020	22843503	Qi Q	2012-07-26	Hum Mol Genet	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels	3,248 European ancestry individuals	659 European ancestry individuals	1p31.1	TYW3, CRYZ	rs3931020-C	0.69	6E-12		0.05	[0.030-0.070] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
1159	chr1	75252763	75252764	rs7547190	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs7547190-?	NR	2E-19				Affymetrix [NR]	N
1159	chr1	75272479	75272480	rs12145183	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	1p31.1	NR	rs12145183-?	NR	2E-14		1.55	NR	Illumina [456414]	N
1159	chr1	75289414	75289415	rs17554720	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p31.1	NR	rs17554720-A	0.0449295	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1159	chr1	75298781	75298782	rs11161851	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p31.1	TYW3	rs11161851-T	0.57	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1159	chr1	75316393	75316394	rs77214504	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p31.1	TYW3	rs77214504-A	0.951903	3E-11		0.0315192	[0.022-0.041] unit decrease	NR [16516521] (imputed)	N
1159	chr1	75316393	75316394	rs77214504	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p31.1	NR	rs77214504-T	0.0453987585338157	1E-8		0.015814703	[0.01-0.021] unit decrease	NR [NR]	N
1159	chr1	75316393	75316394	rs77214504	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p31.1	NR	rs77214504-T	0.0453987585338157	4E-9		0.020690514	[0.014-0.028] unit decrease	NR [NR]	N
1159	chr1	75316393	75316394	rs77214504	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p31.1	NR	rs77214504-T	0.0453987585338157	1E-8		0.016849253	[0.011-0.023] unit decrease	NR [NR]	N
1159	chr1	75316393	75316394	rs77214504	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs77214504-T	0.0453987585338157	4E-9		0.013225037	[0.0088-0.0176] unit decrease	NR [NR]	N
1160	chr1	75452959	75452960	rs147935091	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs147935091-G	0.956	3E-10		0.019	[0.013-0.025] unit increase	NR [NR] (imputed)	N
1160	chr1	75494993	75494994	rs4949691	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	1p31.1	LHX1	rs4949691-G	0.862893	1E-8		0.9645799	NR	Affymetrix [~ 9600000] (imputed)	N
1161	chr1	75503750	75503751	rs115275466	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p31.1	NR	rs115275466-A	0.0418509	5E-8		5.45	z score increase	NR [10847151] (imputed)	N
1161	chr1	75562221	75562222	rs79994730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs79994730-T	0.0426	6E-12		0.024	[0.017-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1161	chr1	75562221	75562222	rs79994730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs79994730-T	0.0426	3E-14	(MTAG)	0.0247	[0.018-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1161	chr1	75593835	75593836	rs17622606	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p31.1	NR	rs17622606-A	0.0465583732007492	2E-9		0.013082839	[0.0088-0.0174] unit decrease	NR [NR]	N
1161	chr1	75593835	75593836	rs17622606	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p31.1	NR	rs17622606-A	0.0465583732007492	3E-8		0.016060764	[0.01-0.022] unit decrease	NR [NR]	N
1161	chr1	75593835	75593836	rs17622606	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p31.1	NR	rs17622606-A	0.0465583732007492	1E-9		0.021157693	[0.014-0.028] unit decrease	NR [NR]	N
1161	chr1	75593835	75593836	rs17622606	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p31.1	NR	rs17622606-A	0.0465583732007492	1E-8		0.01716781	[0.011-0.023] unit decrease	NR [NR]	N
1161	chr1	75593835	75593836	rs17622606	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs17622606-A	0.0465583732007492	1E-9		0.013485453	[0.0091-0.0179] unit decrease	NR [NR]	N
1161	chr1	75616561	75616562	rs12726443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs12726443-A	0.722	2E-9	(conditional-joint)	0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1162	chr1	75634994	75634995	rs79297754	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 61)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p31.1		rs79297754-A	0.048709677	1E-9				Illumina [7417619] (imputed)	N
1162	chr1	75646471	75646472	rs145489304	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs145489304-A	0.0434	2E-12	(conditional-joint)	0.0251	[0.018-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1163	chr1	75770624	75770625	rs1249675	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	1p31.1	SLC44A5	rs1249675-?	NR	7E-6				NR [~ 2000000]	N
1163	chr1	75794094	75794095	rs143918413	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	1p31.1		rs143918413-T	NR	6E-10		0.536	[0.37-0.7] unit decrease	Affymetrix [509886] (imputed)	N
1163	chr1	75809969	75809970	rs17096778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1p31.1		rs17096778-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1163	chr1	75809969	75809970	rs17096778	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p31.1	NR	rs17096778-A	NR	5E-10		6.23	z score increase	Affymetrix [10847151] (imputed)	N
1163	chr1	75809969	75809970	rs17096778	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p31.1	CRYZ	rs17096778-A	0.0452785	8E-9		5.78	z score increase	NR [10847151] (imputed)	N
1163	chr1	75834562	75834563	rs115253508	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	1p31.1		rs115253508-G	NR	4E-9		0.497	[0.33-0.66] unit decrease	Affymetrix [509886] (imputed)	N
1163	chr1	75842192	75842193	rs142592148	28194004	Deary V	2017-02-14	Mol Psychiatry	Genetic contributions to self-reported tiredness.	Self-reported tiredness	108,976 British ancestry individuals	NA	1p31.1	SLC44A5, CRYZ, TYW3	rs142592148-?		6E-8				Affymetrix [~ 17300000] (imputed)	N
1164	chr1	75909484	75909485	rs79777526	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs79777526-?	NR	1E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1164	chr1	75913825	75913826	rs1857353	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume (Alzheimer's disease interaction)	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	1p31.1	SLC44A5	rs1857353-?	NR	2E-6		0.016	[NR] unit decrease	Illumina [478011]	N
1164	chr1	75930313	75930314	rs116362708	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p31.1	NR	rs116362708-A	0.0457750631736347	3E-8		0.019487385	[0.013-0.026] unit decrease	NR [NR]	N
1164	chr1	75930313	75930314	rs116362708	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p31.1	NR	rs116362708-A	0.0457750631736347	3E-8		0.012409984	[0.008-0.0168] unit decrease	NR [NR]	N
1164	chr1	75930313	75930314	rs116362708	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p31.1	NR	rs116362708-A	NR	4E-8		0.02983	[0.019-0.04] unit decrease	Affymetrix [10847151] (imputed)	N
1164	chr1	75969123	75969124	rs77984450	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs77984450-?	NR	9E-22	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1164	chr1	75969123	75969124	rs77984450	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs77984450-?	NR	6E-10	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1164	chr1	75970149	75970149	rs146278291	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs146278291-?	NR	1E-12	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1164	chr1	75971699	75971700	rs74592222	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs74592222-?	NR	5E-23	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1164	chr1	75971699	75971700	rs74592222	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs74592222-?	NR	3E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1164	chr1	76010958	76010959	rs2748444	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs2748444-?	NR	8E-21	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1164	chr1	76011381	76011382	rs449394	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs449394-?	NR	3E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1164	chr1	76013267	76013268	rs76934732	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs76934732-?	NR	2E-12	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1165	chr1	76028725	76028726	rs74091739	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs74091739-?	NR	5E-46	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76032669	76032670	rs79124267	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs79124267-?	NR	6E-13	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1165	chr1	76032903	76032904	rs211762	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs211762-?	NR	3E-27	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76032903	76032904	rs211762	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs211762-?	NR	2E-14	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1165	chr1	76042175	76042175	rs796379038	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs796379038-?	NR	3E-12	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76056463	76056464	rs388916	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs388916-?	NR	2E-30	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76058249	76058250	rs407954	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs407954-?	NR	2E-14	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1165	chr1	76067738	76067739	rs1332790	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs1332790-?	NR	8E-12	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1165	chr1	76067738	76067739	rs1332790	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs1332790-?	NR	6E-24	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76075555	76075556	rs1998547	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs1998547-?	NR	8E-25	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1165	chr1	76075555	76075556	rs1998547	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs1998547-?	NR	5E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
1165	chr1	76075555	76075556	rs1998547	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs1998547-?	NR	2E-11	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1165	chr1	76097043	76097044	rs392691	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	SLC44A5	rs392691-C	0.255255	5E-15	(3-hydroxybutyrylcarnitine (2))	0.199	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1165	chr1	76106674	76106675	rs211718	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p31.1	ACADM	rs211718-T	0.304	2E-71	(SM-5 + 17 other traits)	0.16	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1165	chr1	76106674	76106675	rs211718	20037589	Illig T	2009-12-27	Nat Genet	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	1p31.1	ACADM	rs211718-C	NR	1E-63	(C12/C10)	0.12	[NR] unit increase	Affymetrix [517480]	N
1165	chr1	76111672	76111673	rs12760091	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	CR936677	rs12760091-C	0.439934	2E-20	(caprylate (8:0))	0.221	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
1165	chr1	76111672	76111673	rs12760091	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1p31.1	CR936677	rs12760091-C	0.439934	2E-20	(caprylate (8:0))	0.221	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	CR936677	rs7552404-A	0.702669	5E-28	(decanoylcarnitine (C10))	0.269	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	1p31.1	ACADM	rs7552404-A	0.687	4E-35	(Decenoylcarnitine)	0.0817	[0.069-0.095] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	1p31.1	ACADM	rs7552404-A	0.6861	3E-34	(Decanoylcarnitine)	0.1331	[0.11-0.15] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	1p31.1	ACADM	rs7552404-A	0.6836	2E-49	(Octanoylcarnitine)	0.1411	[0.12-0.16] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p31.1	ACADM	rs7552404-A	0.7	3E-43	(decanoylcarnitine)	0.056	[0.048-0.064] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1165	chr1	76135945	76135946	rs7552404	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p31.1	ACADM	rs7552404-A	0.7	1E-77	(octanoylcarnitine)	0.075	[0.067-0.083] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1165	chr1	76137605	76137606	rs12134854	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs12134854-C	0.29	3E-14	(heptanoylglutamine)	0.486	[0.36-0.61] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76137605	76137606	rs12134854	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs12134854-C	0.29	2E-20	(hexanoylglutamine)	0.325	[0.26-0.39] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76137605	76137606	rs12134854	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	1p31.1	SLC44A5, ACADM	rs12134854-C	NR	2E-18	(Decanoylcarnitine/Tetradecenoylcarnitine)	0.368137	[0.29-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1165	chr1	76137605	76137606	rs12134854	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	1p31.1	ACADM, SLC44A5	rs12134854-C	NR	1E-12	(Decanoylcarnitine)	0.297101	[0.22-0.38] unit decrease	Illumina [up to 9281895] (imputed)	N
1165	chr1	76137605	76137606	rs12134854	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ACADM	rs12134854-?	NR	5E-43	(hexanoylcarnitine)	0.08111	[NR] unit decrease	Affymetrix [655658]	N
1165	chr1	76137605	76137606	rs12134854	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ACADM	rs12134854-?	NR	3E-36	(octanoylcarnitine)	0.08345	[NR] unit decrease	Affymetrix [655658]	N
1165	chr1	76137605	76137606	rs12134854	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ACADM	rs12134854-?	NR	2E-27	(X-11421)	0.07391	[NR] unit decrease	Affymetrix [655658]	N
1165	chr1	76137605	76137606	rs12134854	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ACADM	rs12134854-?	NR	2E-21	(decanoylcarnitine)	0.06573	[NR] unit decrease	Affymetrix [655658]	N
1165	chr1	76143442	76143443	rs7513363	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs7513363-G	0.32	8E-13	(heptanoylglutamine,  hexanoylglutamine,  isocaproylglutamine,  N-octanoylglutamine,  X-12636,  X-12839,  X-24347,  X-24350)	0.006	[0.004-0.008] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76143442	76143443	rs7513363	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs7513363-G	0.32	6E-25	(isocaproylglycine)	0.335	[0.27-0.4] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76143442	76143443	rs7513363	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs7513363-G	0.32	5E-18	(X - 12636)	0.336	[0.26-0.41] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76143442	76143443	rs7513363	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs7513363-G	0.32	3E-24	(isocaproylglutamine)	0.327	[0.26-0.39] unit decrease	Illumina [7750367] (imputed)	N
1165	chr1	76143883	76143884	rs7515955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	1p31.1		rs7515955-A	0.665137	8E-24		0.0415402	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
1166	chr1	76161888	76161889	rs4949874	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	CR936677	rs4949874-T	0.703511	9E-48	(octanoylcarnitine (C8))	0.356	[0.31-0.41] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76161888	76161889	rs4949874	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	1p31.1	ACADM	rs4949874-T	0.7	2E-172	(acetylcarnitine/hexanoylcarnitine)	0.073	[0.067-0.079] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1166	chr1	76167923	76167924	rs76963882	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	1p31.1	SLC44A5, ACADM	rs76963882-C	NR	4E-30	(Decanoylcarnitine/Dodecanoylcarnitine)	0.504574	[0.42-0.59] unit decrease	Illumina [up to 9281895] (imputed)	N
1166	chr1	76168623	76168624	rs815306	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1p31.1	ACADM, RABGGTB, SNORD45C, SNORD45A	rs815306-G	NR	8E-7	(daytime resting, weekdays)	0.6391	[0.39-0.89] unit decrease	Affymetrix [7141204] (imputed)	N
1166	chr1	76180877	76180878	rs11161430	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs11161430-T	0.32	8E-26	(hexanoylglycine,  isocaproylglycine,  X-16567,  X-24402)	0.009	[0.007-0.011] unit decrease	Illumina [7750367] (imputed)	N
1166	chr1	76189945	76189946	rs61797339	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	ACADM	rs61797339-G	0.706928	2E-15	(caproate (6:0))	0.197	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76189945	76189946	rs61797339	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1p31.1	ACADM	rs61797339-G	0.706928	2E-15	(caproate (6:0))	0.197	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76190568	76190569	rs1251075	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs1251075-G	0.32	5E-23	(hexanoylglycine)	0.331	[0.26-0.4] unit decrease	Illumina [7750367] (imputed)	N
1166	chr1	76190568	76190569	rs1251075	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs1251075-G	0.32	2E-20	(X - 16567)	0.426	[0.34-0.52] unit decrease	Illumina [7750367] (imputed)	N
1166	chr1	76190568	76190569	rs1251075	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p31.1	ACADM	rs1251075-G	0.32	2E-18	(N-octanoylglutamine)	0.37	[0.29-0.45] unit decrease	Illumina [7750367] (imputed)	N
1166	chr1	76191743	76191744	rs11161465	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p31.1	NR	rs11161465-?	NR	3E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
1166	chr1	76194053	76194054	rs7524467	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	ACADM	rs7524467-C	0.710445	7E-47	(cis-4-decenoylcarnitine (C10:1))	0.356	[0.31-0.41] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76209753	76209754	rs12123977	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	ACADM	rs12123977-G	0.710253	5E-73	(hexanoylcarnitine (C6))	0.448	[0.4-0.5] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76209753	76209754	rs12123977	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p31.1	ACADM	rs12123977-G	0.710253	2E-23	(hexanoylglutamine)	0.241	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
1166	chr1	76216329	76216330	rs11161521	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p31.1	ACADM	rs11161521-T	0.7	6E-100	(hexanoylcarnitine)	0.07	[0.064-0.076] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1166	chr1	76216329	76216330	rs11161521	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p31.1	ACADM	rs11161521-T	0.7	1E-63	(cis-4-decenoyl carnitine)	0.061	[0.053-0.069] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1166	chr1	76217096	76217097	rs12126607	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	1p31.1	ACADM	rs12126607-A	0.268139	1E-11		0.064801	[0.046-0.083] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1166	chr1	76217096	76217097	rs12126607	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	1p31.1	ACADM	rs12126607-A	0.268139	1E-9		0.071685	[0.049-0.095] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1166	chr1	76217168	76217169	rs4646961	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	1p31.1	ACADM	rs4646961-A	0.297	8E-19		0.048	[0.036-0.06] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1166	chr1	76255227	76255228	rs11161620	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	MSH4, RABGGTB	rs11161620-?	NR	8E-28	(octanoylcarnitine)	0.07629	[NR] unit decrease	Affymetrix [655658]	N
1166	chr1	76255227	76255228	rs11161620	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	MSH4, RABGGTB	rs11161620-?	NR	5E-16	(decanoylcarnitine)	0.05905	[NR] unit decrease	Affymetrix [655658]	N
1166	chr1	76255227	76255228	rs11161620	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	MSH4, RABGGTB	rs11161620-?	NR	4E-32	(hexanoylcarnitine)	0.07363	[NR] unit decrease	Affymetrix [655658]	N
1166	chr1	76255227	76255228	rs11161620	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	MSH4, RABGGTB	rs11161620-?	NR	3E-19	(X-11421)	0.06401	[NR] unit decrease	Affymetrix [655658]	N
1166	chr1	76275099	76275100	rs1144333	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	1p31.1	MSH4	rs1144333-G	0.096	4E-6	(HRTSE)	1.32	[0.75-1.89] unit decrease	Illumina [799713]	N
1167	chr1	76376371	76376372	rs150336829	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p31.1	MSH4	rs150336829-A	0.0160517721819306	3E-6	(O_Lactobacillales_HB)	1.35197	[0.79-1.91] unit decrease	Illumina [7711310] (imputed)	N
1167	chr1	76383296	76383297	rs10782582	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1p31.1	ASB17, MSH4, RABGGTB, SNORD45B	rs10782582-G	NR	3E-6	(daytime resting, weekdays)	0.5553	[0.32-0.79] unit decrease	Affymetrix [7141204] (imputed)	N
1167	chr1	76400260	76400261	rs12090849	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ASB17, MSH4, RABGGTB	rs12090849-?	NR	6E-30	(hexanoylcarnitine)	0.07362	[NR] unit decrease	Affymetrix [655658]	N
1167	chr1	76400260	76400261	rs12090849	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ASB17, MSH4, RABGGTB	rs12090849-?	NR	4E-15	(decanoylcarnitine)	0.05928	[NR] unit decrease	Affymetrix [655658]	N
1167	chr1	76400260	76400261	rs12090849	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ASB17, MSH4, RABGGTB	rs12090849-?	NR	1E-24	(octanoylcarnitine)	0.07436	[NR] unit decrease	Affymetrix [655658]	N
1167	chr1	76400260	76400261	rs12090849	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	1p31.1	ASB17, MSH4, RABGGTB	rs12090849-?	NR	1E-18	(X-11421)	0.06512	[NR] unit decrease	Affymetrix [655658]	N
1168	chr1	76463071	76463072	rs12095069	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	1p31.1	ASB17	rs12095069-T	0.107	9E-7	(HRTSE)	1.36	[0.81-1.91] unit decrease	Illumina [799713]	N
1168	chr1	76477206	76477207	rs12122440	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1p31.1	ST6	rs12122440-C	0.16	2E-6	(Single Height)	0.08	[0.049-0.111] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1168	chr1	76484013	76484014	rs12753569	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	1p31.1	intergenic	rs12753569-G	0.49	8E-6	(Persistence)	0.1	[NR] unit decrease	Affymetrix, Illumina [1252387] (imputed)	N
1168	chr1	76496815	76496816	rs115862481	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	1p31.1	ST6GALNAC3	rs115862481-T	0.011	8E-8		0.18	NR unit increase	Illumina [6417232] (imputed)	N
1168	chr1	76509276	76509277	rs10873865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELPLG	5,356 Icelandic ancestry individuals	NA	1p31.1		rs10873865-T	0.1823	4E-14		0.176756	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1168	chr1	76511627	76511628	rs6704184	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs6704184-?	NR	7E-6		4.498	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1168	chr1	76527517	76527518	rs7545219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.1		rs7545219-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1168	chr1	76545412	76545413	rs10443175	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	1p31.1	NR	rs10443175-T	0.2247	8E-6		40.0	[-57--22] unit decrease	NR [9714326] (imputed)	N
1169	chr1	76584195	76584196	rs6664446	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.1	ASB17	rs6664446-?	NR	3E-6	(symmetric dimethylarginine)	0.2266347	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1169	chr1	76593785	76593786	rs2631781	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1p31.1	ST6GALNAC3	rs2631781-?	NR	1E-6	(AA)	0.051	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1169	chr1	76599095	76599096	rs289698	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	1p31.1	ST6GALNAC3	rs289698-?	NR	4E-6			[NR]	Illumina [283437]	N
1169	chr1	76614710	76614711	rs7550790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p31.1		rs7550790-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1169	chr1	76631857	76631858	rs12031035	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	1p31.1	NR	rs12031035-A	0.2	2E-8		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
1169	chr1	76649648	76649649	rs12089419	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs12089419-?	NR	5E-6				Affymetrix [NR]	N
1170	chr1	76681221	76681222	rs10782606	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs10782606-?	NR	3E-19				Affymetrix [NR]	N
1170	chr1	76689018	76689019	rs10873871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs10873871-G	0.207	4E-10		0.00836333	[0.0057-0.011] unit increase	NR [9732723] (imputed)	N
1170	chr1	76689018	76689019	rs10873871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p31.1	NR	rs10873871-G	0.207	3E-8		0.01745208	[0.011-0.024] unit increase	NR [~ 10000000] (imputed)	N
1170	chr1	76771275	76771276	rs61771475	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	1p31.1	ST6GALNAC3	rs61771475-G	0.0238	2E-6		2.602	[1.749-3.872]	Affymetrix, Illumina [14074516] (imputed)	N
1170	chr1	76772327	76772328	rs10873876	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	1p31.1	SIAT7C	rs10873876-T	0.15	4E-6		1.55	[1.20-1.80]	Affymetrix [307944]	N
1171	chr1	76839535	76839536	rs12144344	24740207	Moy KA	2014-04-16	Am J Clin Nutr	Genome-wide association study of circulating vitamin D-binding protein.	Serum vitamin D-binding protein levels	1,380 European ancestry males	NA	1p31.1	ST6GALNAC3	rs12144344-T	0.44	6E-7		396.39	[239.18-553.60] nmol/L increase	Illumina [591610]	N
1171	chr1	76863535	76863536	rs4369272	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	1p31.1	NR	rs4369272-G	0.2554	5E-6		0.2719	[0.16-0.39] unit increase	Illumina [~ 600000] (imputed)	N
1171	chr1	76863702	76863703	rs4342892	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	1p31.1	NR	rs4342892-A	0.2555	5E-6		0.272	[0.16-0.39] unit increase	Illumina [~ 600000] (imputed)	N
1171	chr1	76864068	76864069	rs4949715	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	1p31.1	NR	rs4949715-A	0.2557	5E-6		0.2716	[0.16-0.39] unit increase	Illumina [~ 600000] (imputed)	N
1171	chr1	76899463	76899464	rs4949718	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	1p31.1	ST6GALNAC3	rs4949718-A	0.402	1E-6		0.026	[0.016-0.036] unit increase	Illumina [747076]	N
1171	chr1	76899463	76899464	rs4949718	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	1p31.1	ST6GALNAC3	rs4949718-A	0.402	2E-7		0.053	[0.033-0.073] unit increase	Illumina [747076]	N
1172	chr1	77016277	77016278	rs315060	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.1	ST6GALNAC3	rs315060-?		3E-6				Illumina [4322238] (imputed)	N
1172	chr1	77050728	77050737	rs71872522	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1p31.1	ST6GALNAC3	rs71872522-?	1.0	3E-7		1.79727	[1.11-2.48] unit decrease	Illumina [13520550] (imputed)	N
1172	chr1	77054806	77054807	rs167557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p31.1	Intergenic	rs167557-A	0.3072	5E-8	(MTAG)	0.0136	[0.0087-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1173	chr1	77126372	77126373	rs551585	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1p31.1	ST6GALNAC5	rs551585-?		3E-7				Illumina [859311]	N
1173	chr1	77148418	77148419	rs17099448	25827505	Swaminathan S	2015-03-14	J Affect Disord	Characteristics of Bipolar I patients grouped by externalizing disorders.	Bipolar disorder	472 non-externalizing cases, 796 externalizing cases	436 non-externalizing European ancestry cases, 801 externalizing European ancestry cases	1p31.1	ST6GALNAC3	rs17099448-?		3E-6	(externalizing vs. non-externalizing)	2.1584287	[NR]	Affymetrix [677171]	N
1173	chr1	77148970	77148971	rs116336492	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	1p31.1	NR	rs116336492-G	NR	9E-6		0.8693	[0.48-1.26] SD units increase	NR [10700000] (imputed)	N
1173	chr1	77183018	77183019	rs569963	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	1p31.1	intergenic	rs569963-A	0.104283	8E-6		0.295252	[0.17-0.42] unit decrease	NR [7263501] (imputed)	N
1173	chr1	77189025	77189026	rs724999	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	1p31.1	ST6GALNAC3	rs724999-A	0.07438	5E-6		0.8518	[0.51-1.19] unit decrease	Illumina [533687]	N
1173	chr1	77190924	77190938	rs988295487	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	1p31.1	ST6GALNAC3	rs988295487-C	0.96	5E-6		0.84	[0.49-1.19] unit decrease	Illumina [12910578] (imputed)	N
1174	chr1	77223777	77223778	rs924297	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	1p31.1	Intergenic	rs924297-?		6E-6				NR [NR]	N
1174	chr1	77259106	77259107	rs11577464	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	1p31.1	NR	rs11577464-?	NR	7E-7		87.2301	[53.65-120.81] unit decrease	Illumina [5432814] (imputed)	N
1174	chr1	77259106	77259107	rs11577464	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	1p31.1	NR	rs11577464-?	NR	3E-7		87.3978	[53.95-120.85] unit decrease	Illumina [5432814] (imputed)	N
1175	chr1	77453592	77453593	rs2143582	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	1p31.1	ST6GALNAC5	rs2143582-T	NR	5E-6		4.554	z score decrease	Illumina [5060354] (imputed)	N
1175	chr1	77459536	77459537	rs17099799	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p31.1	ST6GALNAC5	rs17099799-T	0.974375	2E-6	(ST6GALNAC5, 7927_16_3)	0.3815065	[0.23-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
1175	chr1	77461734	77461735	rs10873925	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	1p31.1	ST6GALNAC5	rs10873925-G	NR	8E-8		5.364	z-score increase	Illumina [632375]	N
1176	chr1	77499070	77499071	rs12136403	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Streptococcus sanguinis abundance in stool	5,959 Finnish ancestry individuals	NA	1p31.1		rs12136403-T	0.0648258	3E-8		0.0935135	[0.061-0.127] unit increase	Illumina [7980478] (imputed)	N
1176	chr1	77574750	77574751	rs77560273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs77560273-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1176	chr1	77590359	77590360	rs77181415	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p31.1	PIGK	rs77181415-C	0.0784	6E-20		1.0642		Affymetrix [11880941] (imputed)	N
1177	chr1	77699070	77699071	rs113240734	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1p31.1	NR	rs113240734-A	0.1601	2E-16		0.0192	[0.015-0.024] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1177	chr1	77700195	77700196	rs11162296	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p31.1		rs11162296-C	0.16	1E-34		0.036	[0.03-0.042] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1177	chr1	77700195	77700196	rs11162296	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1p31.1	PIGK, AK5	rs11162296-C	0.16	1E-12		1.0752687	[1.05-1.10]	NR [16760980] (imputed)	N
1177	chr1	77700195	77700196	rs11162296	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1p31.1	PIGK, AK5	rs11162296-G	0.84	2E-21		0.037	[0.027-0.047] unit decrease	NR [16760980] (imputed)	N
1177	chr1	77705364	77705365	rs12040629	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p31.1	PIGK, AK5	rs12040629-A	0.16	5E-45		1.0713		Affymetrix [11880941] (imputed)	N
1177	chr1	77705364	77705365	rs12040629	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p31.1	PIGK, AK5	rs12040629-A	0.16	5E-45		1.0754079		Affymetrix [11880941] (imputed)	N
1177	chr1	77713433	77713434	rs76681500	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	1p31.1	NR	rs76681500-A	0.16	5E-13		0.044	[0.032-0.056] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1177	chr1	77713433	77713434	rs76681500	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	1p31.1	AK5	rs76681500-?	0.159	1E-9				Affymetrix [up to 73355677] (imputed)	N
1177	chr1	77713433	77713434	rs76681500	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	1p31.1	AK5	rs76681500-G	0.84	2E-9		1.16	[1.10-1.22]	Affymetrix [73355677] (imputed)	N
1177	chr1	77713433	77713434	rs76681500	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	1p31.1	AK5	rs76681500-G	0.84	2E-12		0.043	[0.031-0.055] unit increase	Affymetrix [~ 73355677] (imputed)	N
1178	chr1	77726240	77726241	rs10493596	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1p31.1	AK5	rs10493596-T	0.24	8E-12		1.09	[1.07-1.12]	Illumina [7427422] (imputed)	N
1178	chr1	77746244	77746245	rs2004962	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs2004962-?	NR	1E-28				Affymetrix [NR]	N
1178	chr1	77775232	77775233	rs7547493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p31.1		rs7547493-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1178	chr1	77815424	77815425	rs12736701	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	1p31.1	AK5, PIGK, ZZZ3	rs12736701-?	NR	8E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
1178	chr1	77819014	77819015	rs7532748	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p31.1	AK5	rs7532748-A	0.546	4E-9		0.02107539	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1178	chr1	77820126	77820127	rs12030598	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p31.1	AK5	rs12030598-A	0.1777	4E-40		1.0635		Affymetrix [11880941] (imputed)	N
1179	chr1	77861974	77861975	rs10873936	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p31.1		rs10873936-A	0.3098	9E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1179	chr1	77919309	77919310	rs10873942	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs10873942-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1179	chr1	77934334	77934335	rs10782651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs10782651-T	0.5516	6E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1179	chr1	77934334	77934335	rs10782651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs10782651-T	0.5516	9E-9	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1179	chr1	77944731	77944732	rs11162351	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1p31.1	AK5	rs11162351-C	0.604	3E-8	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1179	chr1	77944731	77944732	rs11162351	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1p31.1	AK5	rs11162351-C	0.602	2E-8		0.00952	[0.0062-0.0129] unit increase	Affymetrix [11709857] (imputed)	N
1179	chr1	77945634	77945635	rs6695572	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	AK5	rs6695572-A	0.188	7E-6	(EA)	0.022	[0.012-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1179	chr1	77945634	77945635	rs6695572	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	AK5	rs6695572-A	0.188	7E-6		0.022	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1179	chr1	77951459	77951460	rs7522356	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p31.1	NR	rs7522356-G	0.484095	1E-9		0.042638525	[0.029-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1179	chr1	77951459	77951460	rs7522356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs7522356-T	0.4404	7E-10	(conditional-joint)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1179	chr1	77964854	77964855	rs11806197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p31.1	NR	rs11806197-G	NR	2E-14		0.0233	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1179	chr1	77964854	77964855	rs11806197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p31.1	AK5	rs11806197-G	0.191298	5E-10		0.017499482	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p31.1		rs71658797-A	0.12	3E-10				NR [NR] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p31.1		rs71658797-A	0.12	6E-26		0.024	% increase	NR [NR] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	1p31.1	NR	rs71658797-A	NR	9E-7		1.16	[1.09-1.22]	NR [NR] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p31.1	AK5	rs71658797-A	0.121718	1E-9		0.020882582	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p31.1	AK5	rs71658797-A	0.12166	1E-12		0.024480302	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p31.1	NR	rs71658797-T	0.876576	1E-10		0.0195452	[0.014-0.026] unit decrease	NR [NR]	N
1179	chr1	77967506	77967507	rs71658797	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p31.1	NR	rs71658797-A	0.1226	5E-20		0.034701146	[0.027-0.042] unit increase	Affymetrix [10549349] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs71658797-?	NR	1E-8		0.1857	[0.12-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p31.1	AK5	rs71658797-A	0.102898044	2E-8		1.145921	[1.092331759-1.202139175]	Illumina [10439017] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	AK5	rs71658797-A	0.103377896	3E-11		1.1362852	[1.094197108-1.179992156]	Illumina [10439017] (imputed)	N
1179	chr1	77967506	77967507	rs71658797	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1p31.1	AK5	rs71658797-A	0.102617403	3E-10		1.1845306	[1.123671054-1.248686293]	Illumina [10439017] (imputed)	N
1179	chr1	77967522	77967523	rs12049202	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs12049202-?	NR	9E-26				Affymetrix [~ 8270000] (imputed)	N
1179	chr1	77967522	77967523	rs12049202	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.1	NA	rs12049202-T	0.1883	3E-29		0.0239	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1179	chr1	77967522	77967523	rs12049202	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.1	NA	rs12049202-T	0.1883	3E-29		0.0239	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1179	chr1	77974483	77974484	rs2133204	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1p31.1	NR	rs2133204-A	0.413	4E-8		0.0121792	[0.0078-0.0165] unit decrease	NR [9732723] (imputed)	N
1179	chr1	77980234	77980235	rs12729914	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p31.1	NA	rs12729914-T	0.829	2E-27		0.0226	[0.018-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1179	chr1	77986515	77986516	rs10873947	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p31.1	NR	rs10873947-?	NR	3E-6		0.0081359	[0.0047-0.0115] unit increase	Affymetrix [805426] (imputed)	N
1180	chr1	77988958	77988959	rs61777072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs61777072-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1180	chr1	77989922	77989923	rs12754946	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p31.1	AK5	rs12754946-C	0.4456	5E-8		0.011152704	[0.0072-0.0152] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1180	chr1	77989922	77989923	rs12754946	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	1p31.1	NR	rs12754946-T	0.575	3E-7		1.0835		NR [9372253] (imputed)	N
1180	chr1	77989922	77989923	rs12754946	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p31.1	NR	rs12754946-T	0.5731	1E-8		0.012757824	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1180	chr1	77990798	77990799	rs59447555	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p31.1		rs59447555-?	NR	9E-6		0.9399266	[0.914510084488592-0.966049568666765]	Illumina [7827597] (imputed)	N
1180	chr1	78008498	78008499	rs116202774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs116202774-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1180	chr1	78023172	78023173	rs7536433	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p31.1	AK5	rs7536433-T	0.2632	6E-11		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1180	chr1	78042121	78042122	rs3736313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p31.1	NR	rs3736313-G	0.262655	2E-12		0.014565	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p31.1		rs17381664-T	0.5974	1E-10		0.09161658	[0.064-0.12] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs17381664-T	NR	3E-15		0.021	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.3883	2E-7	(EA)	0.0223	[0.014-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.37929999999999997	2E-7		0.0218	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-?	NR	4E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-?	NR	2E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-?	NR	2E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-?	NR	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.3883	4E-9	(EA)	0.0228	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.3883	3E-8	(EA, women)	0.027	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.37929999999999997	3E-8	(women)	0.0263	[0.017-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	ZZZ3	rs17381664-C	0.37929999999999997	1E-8		0.0211	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NR	rs17381664-T	0.606726586958566	1E-14		0.021559669	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1180	chr1	78048330	78048331	rs17381664	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p31.1	ZZZ3	rs17381664-C	0.39	3E-8	(Obesity class II)	1.09	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1180	chr1	78070457	78070458	rs9787306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p31.1		rs9787306-T	NR	2E-23		0.0184	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p31.1		rs71641308-T	NR	3E-8		0.0248	[0.016-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p31.1	ZZZ3	rs71641308-T	NR	3E-8		0.029166	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p31.1	ZZZ3	rs71641308-T	NR	4E-9		0.031496	[0.021-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	ZZZ3	rs71641308-T	0.067319773	7E-7		1.1390132	[1.081953742-1.199081778]	Illumina [10439017] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1p31.1	ZZZ3	rs71641308-T	0.066601393	2E-6		1.1908046	[1.108233166-1.279528116]	Illumina [10439017] (imputed)	N
1180	chr1	78086717	78086718	rs71641308	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1p31.1	NR	rs71641308-C		2E-6		0.2043	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
1180	chr1	78092478	78092479	rs6678622	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	ZZZ3	rs6678622-T	0.3874	6E-8	(EA,women)	0.0262	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1180	chr1	78092478	78092479	rs6678622	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	ZZZ3	rs6678622-T	0.3874	1E-9	(EA)	0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1181	chr1	78119012	78119013	rs278835	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs278835-G	0.01045	3E-8	(ORM2)	0.1689	NR unit increase	Illumina [1671387] (imputed)	N
1181	chr1	78130242	78130243	rs278853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p31.1	ZZZ3	rs278853-C	0.736591	1E-10		0.016309021	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1181	chr1	78130242	78130243	rs278853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs278853-C	0.712823	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
1181	chr1	78130242	78130243	rs278853	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p31.1	ZZZ3	rs278853-?	NR	2E-16		0.02392106	[0.018-0.03] unit decrease	Illumina [27896057] (imputed)	N
1181	chr1	78198553	78198554	rs115778101	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	USP33	rs115778101-T	0.952035	3E-8		0.0177683	[0.011-0.024] unit increase	Affymetrix [12370749]	N
1181	chr1	78209415	78209416	rs139175374	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p31.1	USP33	rs139175374-C	0.999	4E-6	(AA)	1.8	NR unit increase	Illumina [NR] (imputed)	N
1182	chr1	78252838	78252839	rs149049023	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs149049023-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1182	chr1	78253033	78253034	rs181954514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p31.1	FAM73A	rs181954514-A	1.0	3E-7	(AA)	0.598	unit increase	Illumina [NR] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p31.1		rs35535570-A	NR	1E-8		0.0266	[0.017-0.036] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p31.1	NR	rs35535570-A	NR	5E-9		0.028	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p31.1	NR	rs35535570-A	0.0755	1E-8		0.0167131	[0.011-0.022] unit decrease	NR [9732723] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	FAM73A	rs35535570-A	0.064602742	4E-6		1.136056	[1.075958214-1.199510448]	Illumina [10439017] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1p31.1	FAM73A	rs35535570-A	0.065139767	3E-7		1.2211821	[1.131188032-1.318335848]	Illumina [10439017] (imputed)	N
1182	chr1	78259755	78259756	rs35535570	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1p31.1	NR	rs35535570-G		2E-6		0.2024	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
1182	chr1	78269206	78269207	rs7525870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p31.1		rs7525870-A	0.401687	3E-13		0.0148597	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1182	chr1	78269206	78269207	rs7525870	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p31.1	FAM73A	rs7525870-G	0.740149	2E-8		0.016389	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1182	chr1	78276976	78276977	rs4121165	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	1p31.1	FAM73A	rs4121165-T	0.4491	9E-7	(waist)	0.6915	NR unit decrease	Affymetrix [305158]	N
1182	chr1	78281740	78281741	rs1977900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.1		rs1977900-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1182	chr1	78331225	78331226	rs1166708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p31.1		rs1166708-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1182	chr1	78353604	78353605	rs114020893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs114020893-C	0.185627	4E-16				Affymetrix, Illumina [24246363] (imputed)	N
1182	chr1	78354584	78354585	rs9726525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p31.1		rs9726525-T	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1183	chr1	78387269	78387270	rs9661687	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p31.1	NEXN	rs9661687-T	0.8633	1E-6		0.0179	[0.011-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1183	chr1	78387269	78387270	rs9661687	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p31.1	NEXN	rs9661687-T	0.8633	6E-15		0.0271	[0.02-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1183	chr1	78387269	78387270	rs9661687	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p31.1	NEXN	rs9661687-T	0.8633	9E-7		0.0167	[0.01-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1183	chr1	78392445	78392446	rs1166698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p31.1		rs1166698-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1183	chr1	78412778	78412779	rs17382996	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	1p31.1	NEXN, FUBP1	rs17382996-A	0.040771834	4E-6		1.5072039	[1.266731374-1.793327236]	Illumina [10439017] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p31.1	FUBP1	rs140681455-C	0.87281	7E-10		0.0195923	[0.013-0.026] unit increase	NR [16516521] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p31.1	FUBP1	rs140681455-CGGCCG	NR	3E-12		0.0298043	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p31.1	FUBP1	rs140681455-CGGCCG	NR	2E-11		0.0286285	[0.02-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p31.1	FUBP1	rs140681455-CGGCCG	NR	1E-8		0.02426	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p31.1	FUBP1	rs140681455-CGGCCG	NR	7E-13		0.0310823	[0.023-0.04] unit decrease	Affymetrix [321169] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p31.1	FUBP1	rs140681455-CGGCCG	0.126244	5E-17		0.028390827	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p31.1	FUBP1	rs140681455-CGGCCG	0.126139	3E-12		0.02585	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p31.1	NR	rs140681455-I	0.126435	8E-18		0.026164	[0.02-0.032] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p31.1	NR	rs140681455-?		4E-10		0.0206945	[0.014-0.027] unit decrease	Affymetrix [19400418] (imputed)	N
1183	chr1	78444764	78444764	rs140681455	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p31.1	NR	rs140681455-?		2E-11		0.0152252	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	6E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	8E-8		0.0209	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	2E-6	(women)	0.0239	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	9E-8		0.0184	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p31.1	FUBP1	rs12401738-A	0.339	4E-6	(women)	0.0208	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NR	rs12401738-A	0.355997007664306	4E-14		0.021289079	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1183	chr1	78446760	78446761	rs12401738	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FUBP1	rs12401738-A	0.355	6E-10	(EA, women)	0.026	[0.018-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1183	chr1	78446760	78446761	rs12401738	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FUBP1	rs12401738-A	0.352	1E-10	(EA)	0.021	[0.015-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1183	chr1	78446760	78446761	rs12401738	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	FUBP1	rs12401738-A	0.347	2E-10		0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1183	chr1	78450516	78450517	rs34517439	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	1p31.1		rs34517439-C	0.88	5E-8		0.316	[0.2-0.43] unit increase	Affymetrix [8918919] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.1		rs34517439-A	NR	1E-51		0.0479	[0.042-0.054] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p31.1		rs34517439-A	NR	3E-10		0.0226	[0.016-0.03] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p31.1		rs34517439-A	NR	1E-34		0.0311	[0.026-0.036] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.1		rs34517439-A	NR	4E-24		0.0363	[0.029-0.043] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	1p31.1		rs34517439-A	NR	2E-6		0.014	[0.0081-0.0199] unit increase	NR [7831927]	N
1183	chr1	78450516	78450517	rs34517439	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p31.1	DNAJB4	rs34517439-C	0.877683	7E-15		0.00273842	[0.002-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p31.1	NR	rs34517439-A	NR	9E-10		0.0228	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p31.1	NR	rs34517439-C	0.0914513	8E-9		0.07038585	[0.047-0.094] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.1	DNAJB4	rs34517439-A	0.1221	6E-48		0.0421	[0.036-0.048] unit increase	Affymetrix [18391927] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p31.1	DNAJB4	rs34517439-C	0.87821	2E-10		0.0137682	[0.0095-0.018] unit decrease	Affymetrix [12370749]	N
1183	chr1	78450516	78450517	rs34517439	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	DNAJB4	rs34517439-C	0.87821	2E-31		0.0246975	[0.021-0.029] unit decrease	Affymetrix [12370749]	N
1183	chr1	78450516	78450517	rs34517439	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	1p31.1	DNAJB4	rs34517439-C	0.899692	2E-12				Affymetrix, Illumina [NR] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs34517439-A	0.114	9E-9		0.0101942	[0.0067-0.0137] unit increase	NR [9732723] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.1		rs34517439-?	NR	1E-63				NR [~ 8900000] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p31.1		rs34517439-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs34517439-?	NR	2E-40				NR [~ 8900000] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs34517439-?	NR	5E-28		0.3759	[0.31-0.44] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs34517439-?	NR	4E-17	(male)	0.45602	[0.35-0.56] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p31.1	NR	rs34517439-?	NR	2E-14	(female)	0.28702	[0.21-0.36] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p31.1	DNAJB4	rs34517439-A	0.1169	5E-21		0.233	[0.18-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1p31.1	GIPC2	rs34517439-A	0.1247	3E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p31.1	DNAJB4	rs34517439-A	0.105016197	7E-8		1.1473451	[1.091520912-1.206024349]	Illumina [10439017] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	DNAJB4	rs34517439-A	0.105354935	2E-10		1.1355314	[1.091764588-1.181052761]	Illumina [10439017] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1p31.1	DNAJB4	rs34517439-A	0.104561684	4E-8		1.1652228	[1.103352102-1.2305629]	Illumina [10439017] (imputed)	N
1183	chr1	78450516	78450517	rs34517439	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	1p31.1	FUBP1	rs34517439-A	0.12	4E-9		1.18		Illumina, Perlegen [9113515] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p31.1	DNAJB4	rs4130548-?	NR	2E-9		0.012752418	[0.0086-0.0169] unit increase	NR [7306098]	N
1183	chr1	78463867	78463868	rs4130548	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs4130548-T	NR	2E-16		0.022	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.3548	2E-6	(EA,women)	0.0263	[0.016-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.3538	8E-7	(EA)	0.0214	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.346	9E-7		0.0209	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.34540000000000004	2E-6	(women)	0.0256	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-?	NR	6E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-?	NR	5E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-?	NR	1E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.3538	5E-10	(EA)	0.0246	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.3538	1E-9	(EA, women)	0.0307	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.346	2E-10	(women)	0.0308	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	DNAJB4	rs4130548-C	0.346	1E-9		0.0229	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	DNAJB4	rs4130548-T	0.648	3E-10	(EA)	0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1183	chr1	78463867	78463868	rs4130548	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	DNAJB4	rs4130548-T	0.648	1E-6	(EA, women)	0.0224	[0.013-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1183	chr1	78485534	78485534	rs544739022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p31.1		rs544739022-GA	NR	3E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1183	chr1	78504410	78504411	rs6702939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.1	GIPC2	rs6702939-T	0.738604	8E-11	(144 ms)	0.0392958	[0.027-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1183	chr1	78504410	78504411	rs6702939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.1	GIPC2	rs6702939-T	0.738604	5E-12	(146 ms)	0.0421218	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1183	chr1	78504410	78504411	rs6702939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.1	GIPC2	rs6702939-T	0.738604	2E-8	(154 ms)	0.0348342	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1183	chr1	78504410	78504411	rs6702939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p31.1	GIPC2	rs6702939-T	0.738604	2E-10	(148 ms)	0.0390583	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1184	chr1	78521930	78521931	rs11162410	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	1p31.1	NR	rs11162410-C	0.86	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1184	chr1	78526584	78526584	rs538216963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p31.1	GIPC2	rs538216963-CT	0.261417	5E-10		0.015825063	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78527911	78527912	rs2031496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p31.1	Intergenic	rs2031496-T	0.5944	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr1	78527911	78527912	rs2031496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p31.1	Intergenic	rs2031496-T	0.5813	6E-12	(MTAG)	0.0091	[0.0066-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr1	78532564	78532565	rs181870845	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p31.1	GIPC2	rs181870845-A	0.999	4E-6	(AA)	1.909	NR unit increase	Illumina [NR] (imputed)	N
1184	chr1	78537158	78537159	rs5775440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p31.1	GIPC2	rs5775440-G	0.252388	4E-13		0.018682027	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78537158	78537159	rs5775440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p31.1	GIPC2	rs5775440-G	0.252378	5E-11		0.016864853	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78537158	78537159	rs5775440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p31.1	GIPC2	rs5775440-G	0.252425	3E-13		0.019093562	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78564195	78564196	rs718294	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	1p31.1	GIPC2	rs718294-?	0.004647	4E-8		14.67	[4.153-51.83]	Affymetrix [547296]	N
1184	chr1	78566233	78566234	rs812097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p31.1	GIPC2	rs812097-G	0.215547	1E-16		0.0223443	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78566233	78566234	rs812097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs812097-A	0.784965	4E-12				Affymetrix, Illumina [22063850] (imputed)	N
1184	chr1	78566233	78566234	rs812097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p31.1	NR	rs812097-A	0.783898	1E-14		0.017623	[0.013-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1184	chr1	78566233	78566234	rs812097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs812097-G	0.288153	2E-13				Affymetrix, Illumina [21126107] (imputed)	N
1184	chr1	78566233	78566234	rs812097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p31.1	NR	rs812097-G	0.215676	1E-15		0.019486	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1184	chr1	78578549	78578550	rs1848837	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p31.1	NR	rs1848837-G	0.2881	4E-10		0.001482	[0.00099-0.00197] unit decrease	Affymetrix [NR] (imputed)	N
1184	chr1	78585085	78585086	rs540742	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p31.1	GIPC2	rs540742-T	0.7788	7E-9		0.0121	[0.008-0.0162] unit increase	Illumina [246328]	N
1184	chr1	78585967	78585968	rs668766	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p31.1	NR	rs668766-?	NR	4E-6		0.0081333	[0.0047-0.0116] unit increase	Affymetrix [805426] (imputed)	N
1184	chr1	78594068	78594069	rs640134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p31.1		rs640134-G	0.773964	4E-10		0.0264501	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1184	chr1	78595380	78595381	rs651413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs651413-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1184	chr1	78597622	78597623	rs76081021	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs76081021-T	0.01045	1E-8	(LRRC59)	0.1273	NR unit increase	Illumina [1671387] (imputed)	N
1184	chr1	78603462	78603463	rs1335482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p31.1		rs1335482-T	0.5295	1E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1184	chr1	78605508	78605509	rs57610614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p31.1		rs57610614-G	NR	7E-10		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1184	chr1	78618786	78618786	rs71075789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p31.1		rs71075789-CTAATA	0.784675	4E-10		0.016999269	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	1p31.1		rs17391694-?	NR	3E-6		1.17597	[1.11-1.24]	NR [674885]	N
1184	chr1	78623625	78623626	rs17391694	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p31.1	GIPC2	rs17391694-T	0.1441	8E-10		0.083	[0.057-0.109] unit decrease	NR [9744772] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	1p31.1	NR	rs17391694-T	NR	2E-9		0.0212	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p31.1	NR	rs17391694-T	NR	7E-20		0.0319	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1p31.1	NR	rs17391694-?	NR	6E-6		2.532	[1.44-3.63] unit increase	Illumina [5779266] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1p31.1	NR	rs17391694-?	NR	6E-6		2.532	[1.44-3.63] unit increase	Illumina [5779266] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p31.1		rs17391694-T	0.1329	1E-17		0.1731581	[0.13-0.21] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	1p31.1	RNFT1P2	rs17391694-T	0.14	3E-12		0.003	[0.002-0.004] unit decrease	Affymetrix [15275733] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p31.1	GIPC2, MGC27382	rs17391694-T	0.112781876	3E-6		1.1221	[1.069557757-1.177223491]	Illumina [10439017] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	GIPC2, MGC27382	rs17391694-T	0.117931448	3E-8		1.1121461	[1.071281501-1.154569487]	Illumina [10439017] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1p31.1	GIPC2, MGC27382	rs17391694-T	0.118152408	4E-7		1.145024	[1.086703288-1.206474625]	Illumina [10439017] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p31.1	NR	rs17391694-G	0.88	3E-9	(EA)	1.1264268	[1.09-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	GIPC2	rs17391694-T	0.1236	7E-8	(EA,women)	0.044	[0.028-0.06] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p31.1	GIPC2	rs17391694-T	0.1236	3E-10	(EA)	0.0386	[0.027-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p31.1	GIPC2	rs17391694-T	0.123	4E-16		0.043	[0.033-0.053] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p31.1	intergenic	rs17391694-C	0.889	3E-9		1.134	[1.077-1.194]	Affymetrix, Illumina [1230000] (imputed)	N
1184	chr1	78623625	78623626	rs17391694	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p31.1	GIPC2	rs17391694-T	0.12	2E-11		0.042	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1184	chr1	78626676	78626677	rs371413909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p31.1		rs371413909-A	NR	4E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1184	chr1	78634020	78634021	rs77138376	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	1p31.1	GIPC2	rs77138376-A	0.009	2E-7		2.63	[1.83-3.78]	Illumina [1438399] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p31.1	NR	rs12406019-A	NR	9E-7		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.44989999999999997	9E-8	(EA,women)	0.0284	[0.018-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.44930000000000003	3E-7	(EA)	0.0214	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.43879999999999997	4E-7		0.0209	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.4374	8E-8	(women)	0.0275	[0.018-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-?	NR	8E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-?	NR	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-?	NR	2E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.44930000000000003	2E-10	(EA, women)	0.031	[0.021-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.44930000000000003	1E-9	(EA)	0.0231	[0.016-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.43879999999999997	6E-11	(women)	0.0309	[0.022-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p31.1	MGC27382	rs12406019-G	0.43879999999999997	2E-9		0.0219	[0.015-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1185	chr1	78678129	78678130	rs12406019	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p31.1	NR	rs12406019-A	0.549692613349753	2E-8		0.015441485	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1185	chr1	78702111	78702112	rs1323097	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	1p31.1	MGC27382	rs1323097-T		4E-6		0.257	[0.15-0.37] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
1185	chr1	78706021	78706022	rs11162437	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p31.1	NR	rs11162437-G	NR	7E-9		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1185	chr1	78707492	78707493	rs679843	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p31.1	MGC27382	rs679843-T	0.334	1E-13		0.0021	[0.0015-0.0027] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1185	chr1	78707492	78707493	rs679843	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p31.1	MGC27382	rs679843-T	0.334	3E-6		0.0036	[0.002-0.0052] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1185	chr1	78743004	78743005	rs71641333	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	MGC27382	rs71641333-A	0.063112169	4E-7		1.1440215	[1.085779181-1.205387897]	Illumina [10439017] (imputed)	N
1185	chr1	78772008	78772009	rs2104621	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.1	MGC27382	rs2104621-?		5E-6				Illumina [4322238] (imputed)	N
1186	chr1	78789790	78789791	rs2352036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs2352036-?	NR	1E-16				Affymetrix [NR]	N
1186	chr1	78819944	78819945	rs2352039	26083657	Stafford-Smith M	2015-06-17	Kidney Int	Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci.	Acute kidney injury in coronary artery bypass surgery (creatinine rise)	873 European ancestry cases	380 European ancestry cases	1p31.1	MGC27382	rs2352039-A	0.156	2E-6		8.9	[5.2-12.6] unit increase	Illumina [530716] (imputed)	N
1186	chr1	78825911	78825912	rs7533564	27207532	Roshandel D	2016-04-12	Diabetes	New Locus for Skin Intrinsic Fluorescence in Type 1 Diabetes Also Associated With Blood and Skin Glycated Proteins.	Skin fluorescence in type 1 diabetes	1,359 European ancestry cases	NA	1p31.1	PTGFR, MGC27382	rs7533564-C		2E-9		0.138	[0.093-0.183] unit increase	Illumina [7735748] (imputed)	N
1186	chr1	78830044	78830045	rs12142416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs12142416-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1186	chr1	78887207	78887208	rs648425	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	1p31.1	PTGFR, MGC27382	rs648425-T	0.02	8E-7	(drinks/week)	0.317	[0.082-0.552] unit decrease	Affymetrix [2500000] (imputed)	N
1187	chr1	78977714	78977715	rs6700362	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p31.1	PTGFR	rs6700362-T	0.231675779	7E-6		1.0824698	[1.045631889-1.12060546]	Illumina [10439017] (imputed)	N
1187	chr1	78977961	78977962	rs1575397	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip)	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1p31.1	NR	rs1575397-G	NR	7E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1187	chr1	78987301	78987302	rs672561	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs672561-C	0.257740490431687	9E-6	(IGP8)	0.1677	[0.094-0.242] unit increase	Illumina [~ 2500000] (imputed)	N
1187	chr1	78995534	78995535	rs34443463	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p31.1	PTGFR	rs34443463-A	0.278780776	3E-6		1.0657755	[1.037685637-1.094625739]	Illumina [10439017] (imputed)	N
1187	chr1	78997912	78997913	rs1265663	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs1265663-?	NR	3E-6				Affymetrix [NR]	N
1187	chr1	79003257	79003258	rs898	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (post-diagnosis)	130 European ancestry cases, 1,180 European ancestry controls	NA	1p31.1	PTGFR	rs898-C	NR	4E-6		2.02	NR	Illumina [602644]	N
1188	chr1	79069408	79069409	rs187209330	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	1p31.1		rs187209330-G	0.015	2E-6				Illumina [NR] (imputed)	N
1188	chr1	79071335	79071336	rs273230	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	1p31.1	PTGFR, IFI44L	rs273230-A	0.717	3E-7		1.1574074	[1.09-1.23]	Affymetrix [28509962] (imputed)	N
1188	chr1	79093817	79093818	rs273259	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	1p31.1	IFI44L	rs273259-A	0.702	6E-12		1.41	[1.28-1.55]	Illumina [8129524] (imputed)	N
1188	chr1	79093817	79093818	rs273259	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	1p31.1	IFI44L	rs273259-A	0.694	1E-9	(MMR-related vs MMR-unrelated)	1.42	[1.27-1.59]	Illumina [up to 8129553] (imputed)	N
1188	chr1	79094080	79094081	rs1333973	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1p31.1	IFI44L	rs1333973-A	0.33	2E-8	(EA)			Illumina [at least 508199]	N
1188	chr1	79094080	79094081	rs1333973	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1p31.1	IFI44L	rs1333973-A	0.32	1E-10				Illumina [at least 508199]	N
1188	chr1	79164104	79164105	rs145487723	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	1p31.1	IFI44, IFI44L	rs145487723-A	0.046	6E-7	(statin-free)	0.106	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
1189	chr1	79168164	79168165	rs79687006	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	1p31.1		rs79687006-?	NR	9E-6		0.3742652	[0.21-0.54] unit decrease	Illumina [9901720] (imputed)	N
1189	chr1	79176867	79176868	rs4650376	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs4650376-C	0.126317908441268	2E-6	(IGP21)	0.2355	[0.14-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1189	chr1	79227955	79227956	rs1937020	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	1p31.1	intergenic	rs1937020-T	0.681	4E-6		0.041	[0.023-0.059] unit decrease	Illumina [6150213] (imputed)	N
1189	chr1	79238014	79238015	rs4650608	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	1p31.1	IFI44L	rs4650608-?		8E-9	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
1189	chr1	79238014	79238015	rs4650608	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1p31.1	IFI44L, IFI44	rs4650608-T	NR	1E-6	(5 degree of freedom test)	1.06	[1.03-1.09]	NR [1252901] (imputed)	N
1189	chr1	79238014	79238015	rs4650608	22182935	Chen DT	2011-12-20	Mol Psychiatry	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese ancestry cases, 1,000 Taiwanese ancestry controls	1,115 European ancestry cases, 2,728 European ancestry controls	1p31.1	PTGFR	rs4650608-T	NR	8E-9				Affymetrix, Illumina [748555]	N
1189	chr1	79240881	79240882	rs149291579	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	1p31.1	NR	rs149291579-?	NR	5E-6		0.121682	[0.07-0.174] unit increase	Affymetrix [9658292] (imputed)	N
1189	chr1	79254761	79254762	rs12730292	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	1p31.1	intergenic	rs12730292-C	NR	5E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1189	chr1	79256104	79256105	rs2352521	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1p31.1	IFI44, ELTD1	rs2352521-T	0.72	5E-6	(Latino)	1.66	[1.33-2.06]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1189	chr1	79261382	79261383	rs11162556	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1p31.1	intergenic	rs11162556-A	0.665	5E-6		1.05929	[1.03-1.08]	NR [9372253] (imputed)	N
1189	chr1	79261382	79261383	rs11162556	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	1p31.1	ADGRL4	rs11162556-?	NR	4E-7				Affymetrix, Illumina [NR] (imputed)	N
1189	chr1	79261382	79261383	rs11162556	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	1p31.1	ADGRL4	rs11162556-?	NR	2E-6				Affymetrix, Illumina [NR]	N
1189	chr1	79262829	79262830	rs74878302	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	1p31.1		rs74878302-T	0.0306146954839976	6E-8	(EA)	0.0766971	[0.049-0.104] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1189	chr1	79263804	79263805	rs10873998	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1p31.1	ELTD1	rs10873998-T		4E-6	(Modelling analysis)	1.06	[1.03-1.09]	NR [1252901] (imputed)	N
1189	chr1	79296059	79296060	rs4650613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.1		rs4650613-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1190	chr1	79352339	79352340	rs2635119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p31.1	ELTD1	rs2635119-C	0.687804	1E-11		0.016178379	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79352747	79352748	rs17403208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p31.1		rs17403208-C	NR	1E-11		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1190	chr1	79357359	79357360	rs2275902	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1p31.1		rs2275902-G	0.703	1E-8		0.084210105	[0.055-0.114] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1190	chr1	79357359	79357360	rs2275902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs2275902-C	0.28737	4E-13				Affymetrix, Illumina [23472807] (imputed)	N
1190	chr1	79357359	79357360	rs2275902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p31.1	NR	rs2275902-C	0.297647	5E-15		0.016113	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1190	chr1	79358826	79358827	rs1968956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p31.1	ELTD1	rs1968956-T	0.040144	5E-11		0.037103184	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr1	79358826	79358827	rs1968956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs1968956-G	0.961545	4E-16				Affymetrix, Illumina [22063850] (imputed)	N
1190	chr1	79358826	79358827	rs1968956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p31.1	NR	rs1968956-T	0.039742	4E-13		0.037192	[0.027-0.047] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1190	chr1	79401105	79401106	rs12030712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p31.1		rs12030712-C	NR	2E-11		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1190	chr1	79401105	79401106	rs12030712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p31.1	ELTD1	rs12030712-C	0.303864	2E-12		0.016922345	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr1	79401105	79401106	rs12030712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs12030712-C	0.283658	5E-13				Affymetrix, Illumina [24558453] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p31.1		rs41313381-A	NR	2E-9		0.0401	[0.027-0.053] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p31.1		rs41313381-A	NR	4E-16		0.0544	[0.041-0.068] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.030946	8E-17		0.051819514	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.030951	6E-16		0.050596755	[0.038-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.030965	3E-23		0.061934903	[0.05-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.03095	5E-12		0.043013845	[0.031-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.030962	4E-27		0.06737784	[0.055-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p31.1	ELTD1	rs41313381-A	0.030941	5E-17		0.052494798	[0.04-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.0293323	9E-16				Affymetrix, Illumina [24649327] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.0304	1E-18		0.048456	[0.038-0.059] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.0295217	1E-23				Affymetrix, Illumina [23114412] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.030511	1E-26		0.058668	[0.048-0.069] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.0295017	7E-13				Affymetrix, Illumina [23467995] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.030485	9E-16		0.043019	[0.033-0.053] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.029741	3E-16				Affymetrix, Illumina [19872809] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p31.1	NR	rs41313381-A	0.030679	7E-19		0.050131	[0.039-0.061] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p31.1		rs41313381-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p31.1		rs41313381-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1190	chr1	79411967	79411968	rs41313381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p31.1		rs41313381-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1191	chr1	79441457	79441458	rs10493618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p31.1	NR	rs10493618-A	0.302001	1E-12		0.014303	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1191	chr1	79442481	79442482	rs376649900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p31.1		rs376649900-G	NR	4E-8		0.0207	[0.013-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1191	chr1	79444705	79444706	rs11162584	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Body mass index	4,658 Korean ancestry females	5,295 Korean ancestry females	1p31.1	NR	rs11162584-A	0.19	2E-7		0.325	[0.2-0.45] unit increase	Affymetrix [NR] (imputed)	N
1191	chr1	79445537	79445538	rs12128198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p31.1	ELTD1	rs12128198-T	0.081369	7E-9		0.023427596	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1191	chr1	79445537	79445538	rs12128198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p31.1	NR	rs12128198-T	0.081285	8E-11		0.021958	[0.015-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1191	chr1	79445537	79445538	rs12128198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p31.1		rs12128198-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1191	chr1	79452105	79452106	rs12129889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p31.1	ELTD1	rs12129889-T	0.122839	2E-9		0.020209076	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1191	chr1	79463155	79463156	rs12073624	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.1	IFI44	rs12073624-?	NR	4E-6	(gamma aminoisobutyric acid)	0.28409573	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1191	chr1	79466217	79466218	rs12073294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs12073294-G	0.457477	6E-15				Affymetrix, Illumina [24246363] (imputed)	N
1191	chr1	79466798	79466799	rs6695019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p31.1	NR	rs6695019-T	0.423543	5E-13		0.01333	[0.0097-0.0169] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1191	chr1	79466798	79466799	rs6695019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs6695019-T	0.465068	6E-11				Affymetrix, Illumina [21126107] (imputed)	N
1191	chr1	79466891	79466892	rs10874004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p31.1	ELTD1	rs10874004-G	0.363811	5E-9		0.014020797	[0.0093-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr1	79466891	79466892	rs10874004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p31.1	NR	rs10874004-G	0.362679	8E-11		0.013773	[0.0096-0.0179] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1191	chr1	79467974	79467975	rs115294879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p31.1	NR	rs115294879-G	0.960542	3E-18		0.042177	[0.033-0.052] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1191	chr1	79476510	79476511	rs12038026	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p31.1	ADGRL4	rs12038026-T	0.765	2E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix [18391927] (imputed)	N
1191	chr1	79481652	79481653	rs12565500	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	1p31.1	NR	rs12565500-A	0.1605	4E-6		0.1907	[0.11-0.27] unit decrease	Illumina [10677593] (imputed)	N
1191	chr1	79509108	79509109	rs6687262	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs6687262-C	0.553310385988398	4E-7	(IGP37)	0.1576	[0.097-0.219] unit decrease	Illumina [~ 2500000] (imputed)	N
1191	chr1	79509108	79509109	rs6687262	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs6687262-C	0.553040158270174	5E-7	(IGP38)	0.1567	[0.096-0.218] unit decrease	Illumina [~ 2500000] (imputed)	N
1191	chr1	79509108	79509109	rs6687262	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p31.1	NR	rs6687262-C	0.552969396260018	2E-6	(IGP31)	0.1461	[0.085-0.207] unit decrease	Illumina [~ 2500000] (imputed)	N
1191	chr1	79523634	79523635	rs4650387	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p31.1	ADGRL4, LINC01781	rs4650387-?		4E-6	(EA)	0.151292	[0.087-0.216] unit decrease	Illumina [13620258] (imputed)	N
1191	chr1	79523634	79523635	rs4650387	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p31.1	ADGRL4, LINC01781	rs4650387-?		4E-6	(African American)	0.151292	[0.087-0.216] unit decrease	Illumina [13620258] (imputed)	N
1191	chr1	79555990	79555991	rs75352580	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	1p31.1	NR	rs75352580-A	0.02797	2E-6		0.4347	[0.26-0.61] unit increase	Illumina [10677593] (imputed)	N
1192	chr1	79639108	79639109	rs228568	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1p31.1	NR	rs228568-A	0.7971	6E-9		0.0134	[0.0089-0.0179] unit decrease	Illumina [NR] (imputed)	N
1192	chr1	79639108	79639109	rs228568	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1p31.1	NR	rs228568-A	0.806	3E-8		0.0149	[0.0096-0.0202] unit increase	Illumina [NR] (imputed)	N
1192	chr1	79688674	79688675	rs150371835	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs150371835-C	0.99	2E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
1193	chr1	79765980	79765981	rs146497750	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs146497750-A	0.99	2E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
1194	chr1	79874810	79874811	rs17416934	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p31.1		rs17416934-T	0.616	6E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1194	chr1	79931319	79931320	rs147478791	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1p31.1	NR	rs147478791-C	0.99	3E-6		1.01	[-1.0088-3.0288]	Affymetrix [at least 143006] (imputed)	N
1195	chr1	79963815	79963816	rs11588913	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p31.1	ELTD1	rs11588913-G	0.5963	3E-10		1.0238807		Affymetrix [11880941] (imputed)	N
1195	chr1	79963815	79963816	rs11588913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p31.1		rs11588913-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1195	chr1	80000647	80000648	rs3000140	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	ADH5P2	rs3000140-A	0.027	2E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1195	chr1	80023248	80023249	rs1494858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs1494858-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1195	chr1	80040352	80040353	rs2201453	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs2201453-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1196	chr1	80134122	80134123	rs7533906	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p31.1	FAM69A	rs7533906-?	NR	4E-6		1.2982	[NR]	Affymetrix [722112]	N
1197	chr1	80243000	80243001	rs12024204	21151130	Painter JN	2010-12-12	Nat Genet	Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls	2,392 European ancestry cases, 2,271 European ancestry controls	1p31.1	intergenic	rs12024204-G	0.52	6E-6		1.22	[1.07-1.18]	Illumina [504723]	N
1197	chr1	80246019	80246020	rs1857095	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	1p31.1	ELTD1	rs1857095-T	0.98	8E-9		2.82E-4	[-0.00881-0.00938] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1197	chr1	80301887	80301888	rs11591201	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	1p31.1	Intergenic	rs11591201-A		4E-6		0.034	[0.02-0.049] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1197	chr1	80340420	80340421	rs6696969	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	1p31.1	RP11-339A11.1	rs6696969-C	NR	4E-6		15.19	[8.89-21.49] unit decrease	Illumina [4471676] (imputed)	N
1197	chr1	80344059	80344060	rs11162852	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p31.1	RP11-339A11.1	rs11162852-A	0.1718	9E-6		0.0401	[0.022-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1198	chr1	80350714	80350715	rs34911860	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	1p31.1	NR	rs34911860-G		3E-6		0.3675	[0.21-0.52] SD units increase	NR [10700000] (imputed)	N
1198	chr1	80369901	80369902	rs912759	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Accommodative esotropia	224 European ancestry cases, 749 European ancestry controls	66 European ancestry cases, 264 European ancestry controls	1p31.1	intergenic	rs912759-C	0.5	2E-8		1.6949153	NR	Illumina [6470615] (imputed)	N
1198	chr1	80452797	80452798	rs1340678	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	1p31.1	NR	rs1340678-T	0.51	4E-6		1.56	[1.29-1.89]	Illumina [17125421] (imputed)	N
1198	chr1	80477879	80477880	rs10493631	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	HMGB1P18	rs10493631-G	0.306	5E-6	(Sleep duration )	0.04	[NR] min/d increase	Illumina [899892]	N
1199	chr1	80487887	80487888	rs148995264	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	1p31.1		rs148995264-C	NR	2E-6		2.62		Illumina [NR] (imputed)	N
1199	chr1	80487887	80487888	rs148995264	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	1p31.1		rs148995264-C	NR	2E-6		2.72		Illumina [NR] (imputed)	N
1199	chr1	80500791	80500792	rs142627205	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	1p31.1	NR	rs142627205-C		6E-6		0.3721	[0.21-0.53] SD units decrease	NR [10700000] (imputed)	N
1200	chr1	80734580	80734581	rs11162963	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	1p31.1	ELTD1	rs11162963-T	0.63	4E-6		1.09	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1201	chr1	80793117	80793118	rs12065553	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1p31.1	Intergenic	rs12065553-G	0.279676	1E-8		0.0309	[0.017-0.045] unit increase	Illumina [1220000] (imputed)	N
1201	chr1	80795988	80795989	rs6667297	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p31.1	NR	rs6667297-G	NR	6E-11		1.0309278		NR [NR] (imputed)	N
1201	chr1	80796148	80796149	rs200006126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p31.1		rs200006126-C	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1201	chr1	80796148	80796149	rs200006126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.1		rs200006126-C	NR	7E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1201	chr1	80796648	80796649	rs575840515	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	LPHN2	rs575840515-A	0.709906	3E-9		0.00900837	[0.006-0.012] unit decrease	Affymetrix [12370749]	N
1201	chr1	80797909	80797910	rs12073845	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	1p31.1	NR	rs12073845-?		3E-8				NR [11140414]	N
1201	chr1	80797909	80797910	rs12073845	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	1p31.1	NR	rs12073845-T	NR	3E-8		5.524	z score decrease	Affymetrix [10847151] (imputed)	N
1201	chr1	80798634	80798635	rs12088284	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs12088284-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1201	chr1	80798634	80798635	rs12088284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs12088284-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1201	chr1	80799328	80799329	rs2389016	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1p31.1	intergenic	rs2389016-T	0.28	1E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
1201	chr1	80809635	80809636	rs113188507	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1p31.1		rs113188507-?	NR	7E-18		0.0263	unit increase	NR [NR]	N
1201	chr1	80809635	80809636	rs113188507	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1p31.1	NR	rs113188507-A	0.2838	3E-21		1.024	[1.019-1.029]	NR [8098588] (imputed)	N
1201	chr1	80812019	80812020	rs6696828	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.1	NA	rs6696828-C	0.2976	6E-11		0.012	[0.0085-0.0155] unit increase	NR [~ 27400000] (imputed)	N
1201	chr1	80812328	80812329	rs6688826	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs6688826-T	0.699	1E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1201	chr1	80836880	80836881	rs951258	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs951258-G	0.366	7E-9		0.00649223	[0.0043-0.0087] unit increase	NR [9732723] (imputed)	N
1201	chr1	80839277	80839278	rs1937787	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	1p31.1	ELTD1	rs1937787-T	0.84	7E-7		0.27	[0.17-0.37] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
1202	chr1	80893109	80893110	rs61453857	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	1p31.1		rs61453857-?	NR	1E-8				NR [8243736]	N
1202	chr1	80911113	80911114	rs12118390	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	1p31.1	NR	rs12118390-?	0.022	3E-7		2.253	[1.658-3.06] unit increase	Illumina [563945]	N
1202	chr1	80946606	80946607	rs190206717	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	1p31.1	intergenic	rs190206717-?	NR	9E-6		43.9	[4.84-398.9]	Illumina [654642] (imputed)	N
1202	chr1	80974828	80974829	rs7539892	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1p31.1	ELTD1, LPHN2	rs7539892-G	0.93	9E-6		0.096	[0.053-0.139] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1202	chr1	80977962	80977963	rs356287	30102696	Chen Y	2018-08-13	PLoS Genet	A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1.	Biliary atresia	343 European ancestry cases, 1,716 European ancestry controls	156 European ancestry cases, 212 European ancestry controls	1p31.1	NR	rs356287-G	0.36	4E-6		1.48	[1.25-1.74]	Illumina [1171073] (imputed)	N
1202	chr1	80979420	80979421	rs76668869	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	1p31.1	ADGRL4, LOC101927412	rs76668869-?		8E-6	(Etanercept)	0.61	[NR] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1202	chr1	80979420	80979421	rs76668869	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	1p31.1	ADGRL4, LOC101927412	rs76668869-?		2E-11	(Etanercept)	0.75	[0.53-0.97] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1202	chr1	80999758	80999759	rs17398299	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	1p31.1	LPHN2	rs17398299-?	NR	4E-7				Affymetrix, Illumina [~ 2600000] (imputed)	N
1203	chr1	81062339	81062340	rs77246228	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	1p31.1	NR	rs77246228-G	0.09103	8E-7		0.2556	[0.15-0.36] unit decrease	Illumina [10677593] (imputed)	N
1204	chr1	81182076	81182077	rs77237189	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p31.1		rs77237189-?	NR	5E-6		1.1823617	[1.10017217225049-1.270691304795]	Illumina [up to 7827597] (imputed)	N
1205	chr1	81315042	81315043	rs17105538	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	1p31.1	ELTD1, LPHN2	rs17105538-G	0.15	8E-6		0.08	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
1205	chr1	81349394	81349395	rs6673575	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p31.1	LPHN2	rs6673575-A	0.32	9E-11		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1206	chr1	81420939	81420940	rs12409530	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	1p31.1	LINC01781, LOC101927434	rs12409530-T	0.6485	9E-6		0.1446	[0.081-0.208] unit increase	NR [NR] (imputed)	N
1206	chr1	81428766	81428767	rs72940689	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	1p31.1	intergenic	rs72940689-G	0.0586	3E-7	(model 1)	1.2663037	[1.09-1.44]	Illumina [11601089] (imputed)	N
1207	chr1	81557655	81557656	rs546980103	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1p31.1		rs546980103-C	0.027336	2E-6		0.099648	[0.058-0.141] unit decrease	Affymetrix [15580782] (imputed)	N
1207	chr1	81638823	81638824	rs1752216	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1p31.1	NR	rs1752216-A	0.9521	1E-6		0.040799674	[0.024-0.057] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1207	chr1	81652783	81652784	rs148815882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.1		rs148815882-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1208	chr1	81666040	81666041	rs6683704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p31.1		rs6683704-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1208	chr1	81672012	81672013	rs5016898	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p31.1	LPHN2	rs5016898-C	0.5762	5E-10		1.0243927		Affymetrix [11880941] (imputed)	N
1208	chr1	81674496	81674497	rs17131753	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1p31.1	LPHN2	rs17131753-?	NR	7E-6		7.784	unit increase (EA, Australian cohort)	Illumina [610255]	N
1208	chr1	81708845	81708846	rs12070922	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p31.1		rs12070922-A	0.120332398	4E-9				Illumina [7417619] (imputed)	N
1208	chr1	81755443	81755444	rs1327609	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	1p31.1	LPHN2	rs1327609-?		5E-6				Illumina [2668805]	N
1209	chr1	81879410	81879411	rs12046867	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p31.1	NR	rs12046867-?	NR	3E-8				Illumina [7760689] (imputed)	N
1210	chr1	81944070	81944071	rs111620896	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1p31.1	NR	rs111620896-A	0.9825	2E-6		0.7339	[0.43-1.03] unit increase	Illumina [NR] (imputed)	N
1210	chr1	81972441	81972442	rs11163319	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	1p31.1	NR	rs11163319-?	NR	1E-6	(EA)	0.81	unit decrease	Illumina [at least 4700000] (imputed)	N
1210	chr1	81977125	81977126	rs75512254	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1p31.1	NR	rs75512254-A	0.9483	9E-6		0.3886	[0.22-0.56] unit increase	Illumina [NR] (imputed)	N
1210	chr1	81998026	81998027	rs17106647	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	1p31.1	LPHN2, RP5-837I24.2	rs17106647-T	0.25	6E-6		0.219	[0.12-0.31] unit decrease	Illumina [6380737] (imputed)	N
1211	chr1	82055394	82055395	rs186891871	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p31.1	Intergenic	rs186891871-C	0.998	9E-6	(liability model)	0.98	[0.55-1.41] unit decrease	NR [19725427] (imputed)	N
1211	chr1	82074851	82074852	rs11809789	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	1p31.1	RP5-837I24.4	rs11809789-A	0.014	6E-6		0.396	[0.226-0.565] unit increase	Affymetrix [808465]	N
1211	chr1	82121094	82121095	rs58116956	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	1p31.1	NR	rs58116956-A		2E-6		0.4545	[0.27-0.64] unit increase	Illumina [12764477] (imputed)	N
1211	chr1	82151351	82151352	rs71646944	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		ADGRL2	rs71646944-T	NR	6E-18		1.04	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
1211	chr1	82165126	82165127	rs9729508	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs9729508-A	NR	1E-9		1.0565		Affymetrix [9869154] (imputed)	N
1212	chr1	82196321	82196322	rs9324185	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	1p31.1	ADGRL2	rs9324185-T	NR	4E-6				Illumina [up to 3935887] (imputed)	N
1212	chr1	82230757	82230758	rs77706956	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p31.1	NR	rs77706956-?		1E-6				Illumina [4322238] (imputed)	N
1212	chr1	82236405	82236406	rs184597564	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	1p31.1	ADGRL2	rs184597564-A	0.0282	8E-7		3.0647		Illumina [7559010] (imputed)	N
1212	chr1	82237576	82237577	rs2066363	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1p31.1	LPHN2	rs2066363-C	0.34	8E-11				Illumina [7347414] (imputed)	N
1212	chr1	82243881	82243882	rs12564951	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	1p31.1	ADGRL2	rs12564951-?	NR	4E-6		0.8388	[0.76-0.91]	Illumina [NR] (imputed)	N
1212	chr1	82247247	82247248	rs11163372	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	1p31.1	LPHN2	rs11163372-T	0.188	3E-6	(Novelty seeking)	0.19	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1212	chr1	82264316	82264317	rs3811468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p31.1		rs3811468-G	NR	6E-33		0.0254	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1213	chr1	82315918	82315919	rs3790937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.1	NR	rs3790937-C	NR	3E-9		0.0236	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1213	chr1	82348716	82348717	rs367881	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1p31.1	ADGRL2	rs367881-?		2E-6				Illumina [7405822] (imputed)	N
1213	chr1	82374493	82374494	rs412378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p31.1		rs412378-A	NR	2E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1213	chr1	82375560	82375561	rs651533	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	LPHN2	rs651533-T	0.243821	6E-9		0.00929619	[0.0062-0.0124] unit increase	Affymetrix [12370749]	N
1213	chr1	82375560	82375561	rs651533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs651533-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1213	chr1	82375560	82375561	rs651533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs651533-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1213	chr1	82379445	82379446	rs284227	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p31.1	NA	rs284227-T	0.7275	6E-15		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1213	chr1	82379445	82379446	rs284227	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p31.1	NA	rs284227-T	0.7275	6E-15		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1213	chr1	82398543	82398544	rs6681544	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	1p31.1	LPHN2	rs6681544-C		6E-6		0.04	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1214	chr1	82465777	82465778	rs4970658	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p31.1	NA	rs4970658-A	0.1826	1E-13		0.0147	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1214	chr1	82524288	82524289	rs149843442	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder x household tobacco use interaction	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	1p31.1	LPHN2	rs149843442-?	NR	4E-8	(subtype 5, AA)	5.514	[NR] z score increase	Illumina [up to 47104916] (imputed)	N
1214	chr1	82524288	82524289	rs149843442	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	1p31.1	LPHN2	rs149843442-?		2E-7	(subtype 5, AA)	5.201	[NR] z score increase	Illumina [up to 47104916] (imputed)	N
1216	chr1	82716218	82716219	rs4457620	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p31.1	NR	rs4457620-?	NR	1E-8				Illumina [7760689] (imputed)	N
1216	chr1	82744251	82744252	rs78810706	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	1p31.1	LPHN2	rs78810706-T	0.0387	4E-7		2.299	[1.666-3.172]	Affymetrix, Illumina [14074516] (imputed)	N
1216	chr1	82765051	82765052	rs1770678	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	LPHN2	rs170678-G	0.07	7E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1216	chr1	82771907	82771908	rs75420973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs75420973-T	0.01045	2E-17	(GPNMB)	0.1086	NR unit increase	Illumina [1671387] (imputed)	N
1216	chr1	82771907	82771908	rs75420973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs75420973-T	0.01045	1E-8	(COQ9)	0.01928	NR unit increase	Illumina [1671387] (imputed)	N
1216	chr1	82800338	82800339	rs56920577	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p31.1		rs56920577-T	0.779	4E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1216	chr1	82801635	82801636	rs72723587	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	1p31.1	ADGRL2	rs72723587-A	0.13	8E-6		4.11	[2.15-7.86]	Illumina [2668805]	N
1216	chr1	82807875	82807876	rs144405847	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	1p31.1	NR	rs144405847-?	NR	5E-7		0.7658	[0.47-1.06] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1217	chr1	82905321	82905322	rs11803159	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels	2,590 Han Chinese ancestry individuals	NA	1p31.1	NR	rs11803159-T	0.06054	7E-6		0.4558	NR unit increase	Affymetrix [3101376] (imputed)	N
1217	chr1	82919924	82919925	rs1281571	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	1p31.1	LPHN2	rs1281571-A	0.4	4E-8		1.2271	[NR]	Illumina [4867007] (imputed)	N
1217	chr1	82928940	82928940	rs35698674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p31.1		rs35698674-TA	NR	4E-16		0.0166	[0.013-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1217	chr1	82937432	82937433	rs11163481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p31.1		rs11163481-T	NR	1E-11		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1217	chr1	82937432	82937433	rs11163481	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1p31.1	NR	rs11163481-T	NR	3E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1217	chr1	82943780	82943781	rs12143151	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	1p31.1	TTLL7, LPHN2	rs12143151-?	0.04453	1E-9		4.231	[3.73-4.73]	Affymetrix [547296]	N
1217	chr1	82944570	82944571	rs10874312	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p31.1	NR	rs10874312-A	0.66	3E-9		0.0113	[0.0075-0.0151] unit increase	NR [NR]	N
1217	chr1	82944570	82944571	rs10874312	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p31.1	LINC01362	rs10874312-A	0.625	8E-15		0.0055	[0.0041-0.0069] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1217	chr1	82944570	82944571	rs10874312	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1p31.1	LPHN2	rs10874312-A	0.67	2E-8		0.0057	[0.0035-0.0079] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1217	chr1	82954120	82954121	rs1887249	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p31.1		rs1887249-T	0.35	7E-14		7.48	z score increase	Affymetrix [9061022] (imputed)	N
1217	chr1	82957844	82957845	rs1887251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p31.1	NR	rs1887251-C	NR	6E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1217	chr1	82957870	82957871	rs1887252	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p31.1	LINC01362	rs1887252-C	0.6173	1E-10		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1217	chr1	82957870	82957871	rs1887252	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p31.1	LINC01362	rs1887252-C	0.6365	1E-16		0.0029	[0.0021-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1217	chr1	82962839	82962840	rs2094323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p31.1		rs2094323-C	NR	2E-16		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1218	chr1	82996067	82996068	rs10157848	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	1p31.1	RP11-147G16.1	rs10157848-C	0.96	4E-6		7.241	[4.15-10.33] unit increase	Illumina [NR] (imputed)	N
1218	chr1	83007787	83007788	rs72711827	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p31.1	intergenic	rs72711827-A	0.016	8E-6		0.133	[0.074-0.192] unit decrease	Affymetrix [7947838] (imputed)	N
1218	chr1	83009224	83009225	rs318408	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p31.1	NR	rs318408-C	0.4137	5E-11				NR [9056863] (imputed)	N
1218	chr1	83030503	83030504	rs1690546	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p31.1		rs1690546-T	0.44	3E-10		6.31	z score increase	Affymetrix [9061022] (imputed)	N
1218	chr1	83054798	83054799	rs10874322	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1p31.1	TTLL7	rs10874322-?	NR	2E-6				Affymetrix, Illumina [~ 1300000]	N
1218	chr1	83062932	83062933	rs10493718	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	1p31.1	NR	rs10493718-C		7E-7		0.11	[0.066-0.154] SD units increase	NR [10700000] (imputed)	N
1218	chr1	83071617	83071618	rs147388556	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	1p31.1	LPHN2	rs147388556-T	0.96	3E-7	(BDRPRED, AA)	4.17	[2.58-5.76] unit increase	Illumina [NR] (imputed)	N
1218	chr1	83099188	83099188	rs201950816	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	1p31.1		rs201950816-TA	NR	7E-10		0.653	[0.45-0.86] unit increase	Affymetrix [509886] (imputed)	N
1219	chr1	83110899	83110900	rs186203974	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p31.1	NR	rs186203974-T	0.01	2E-6		1.54	[1.36-1.72]	Illumina [8468885] (imputed)	N
1219	chr1	83125607	83125608	rs75213930	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal P-tau181p levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	1p31.1	LPHN2, MIR548AP	rs75213930-G	0.03	4E-7		0.299	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1219	chr1	83133226	83133227	rs76141128	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	1p31.1		rs76141128-A	NR	1E-6		0.203	unit decrease	Illumina [NR] (imputed)	N
1219	chr1	83137698	83137699	rs319671	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1p31.1		rs319671-C	NR	4E-6		1.0214	[0.6-1.45] unit decrease	Illumina [NR] (imputed)	N
1219	chr1	83144898	83144899	rs413673	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p31.1	NR	rs413673-G	0.178	1E-5	(IFNalpha_CXCL10_of_CD8p_T)			Illumina [5084123] (imputed)	N
1219	chr1	83177364	83177365	rs12032817	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs12032817-?	NR	2E-7				Affymetrix [NR]	N
1219	chr1	83177591	83177592	rs11587847	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p31.1	NR	rs11587847-?	NR	2E-6				Affymetrix [NR]	N
1219	chr1	83193769	83193770	rs9660208	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1p31.1		rs9660208-G	NR	7E-6		0.95412	[0.55-1.36] unit decrease	Illumina [NR] (imputed)	N
1219	chr1	83217390	83217391	rs12746703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p31.1		rs12746703-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1219	chr1	83220433	83220434	rs17498581	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	1p31.1	LPHN2, TTLL7	rs17498581-T	0.1	9E-6		0.024	[0.012-0.036] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
1219	chr1	83220655	83220656	rs11582609	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	1p31.1	intergenic	rs11582609-?	NR	3E-6	(dominant )	1.2345679		Affymetrix [NR]	N
1220	chr1	83252509	83252510	rs390296	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	1p31.1	LPHN2, TTLL7	rs390296-?		2E-6				Illumina [~ 5140000] (imputed)	N
1220	chr1	83253131	83253132	rs438697	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1p31.1	LPHN2, TTLL7	rs438697-?		8E-6				Illumina [~ 5190000] (imputed)	N
1220	chr1	83259079	83259080	rs10874340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p31.1		rs10874340-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1220	chr1	83269969	83269970	rs480745	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm birth)	916 pre-term birth neonates, 935 term birth neonates	243 pre-term birth neonates, 149 term birth neonates	1p31.1	LPHN2	rs480745-?	0.91	7E-7		1.75	[NR]	Affymetrix [797196]	N
1220	chr1	83277568	83277569	rs149173551	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p31.1	NR	rs149173551-C	0.01	7E-6		1.67	[1.45-1.89]	Illumina [8468885] (imputed)	N
1220	chr1	83284561	83284562	rs563093	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p31.1	NR	rs563093-?	NR	1E-6		0.0084359	[0.005-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1220	chr1	83311834	83311835	rs11163585	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	1p31.1	intergenic	rs11163585-?	0.24	9E-7	(perphenazine-HDL)			Affymetrix [492900]	N
1221	chr1	83394845	83394846	rs1144266	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	1p31.1	LINC01362	rs1144266-?	NR	1E-6		2.2222223		Illumina [983392]	N
1221	chr1	83489843	83489844	rs12742923	22628157	Levine AJ	2012-05-24	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia	1,287 European ancestry HIV-infected male individuals	NA	1p31.1	intergenic	rs12742923-T	NR	8E-7	(NCI)			Illumina [~ 2500000] (imputed)	N
1221	chr1	83490059	83490060	rs944727	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p31.1	NR	rs944727-A	0.0453	3E-8	(PBDC1)	0.01852	NR unit decrease	Illumina [1671387] (imputed)	N
1221	chr1	83490160	83490161	rs17465658	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	1p31.1	Intergenic	rs17465658-C	0.22	4E-6	(dominant)	0.1	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
1223	chr1	83633833	83633841	rs202166786	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	1p31.1	NR	rs202166786-C	0.1049	2E-6		0.2406	[0.14-0.34] unit decrease	Illumina [10677593] (imputed)	N
1223	chr1	83641423	83641424	rs2997325	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	1p31.1	RP11-170N11.1	rs2997325-A	0.629	2E-8		0.0389	NR unit decrease	NR [NR] (imputed)	N
1223	chr1	83692382	83692383	rs2389438	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p31.1	TTLL7	rs2389438-C	0.815	2E-6	(EA, women)	0.028	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1223	chr1	83714596	83714597	rs144454688	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs144454688-?	NR	7E-6		4.5	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1224	chr1	83763280	83763281	rs146737477	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	1p31.1		rs146737477-?	NR	2E-7		0.25	[0.16-0.34] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
1224	chr1	83765583	83765584	rs150095447	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	1p31.1		rs150095447-?	NR	5E-9		0.32	[0.21-0.43] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1225	chr1	83934439	83934440	rs11163752	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1p31.1	LOC101927587	rs11163752-C	0.432	4E-6		0.0083	[0.0048-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
1225	chr1	83937320	83937321	rs150340921	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p31.1	NR	rs150340921-T	0.01	2E-6		1.59	[1.39-1.79]	Illumina [8468885] (imputed)	N
1225	chr1	83937320	83937321	rs150340921	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1p31.1	LINC01361, LOC101927587	rs150340921-T	0.012942394	5E-6		1.6037836	[1.309278568-1.964533794]	Illumina [10439017] (imputed)	N
1225	chr1	83941293	83941294	rs2795228	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	1p31.1	NR	rs2795228-T	0.18	6E-7		1.6949153	[1.48-1.91]	NR [up to 6398204] (imputed)	N
1225	chr1	83987642	83987643	rs12568728	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p31.1	TTLL7	rs12568728-T	0.303	1E-8		0.0073	[0.0048-0.0098] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1226	chr1	84026652	84026653	rs7556614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p31.1		rs7556614-T	0.604284	9E-12		0.015586851	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1226	chr1	84026652	84026653	rs7556614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p31.1		rs7556614-T	0.604352	4E-9		0.013362363	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1226	chr1	84030508	84030509	rs6576855	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p31.1	TTLL7	rs6576855-T	0.4533	5E-8		0.010656122	[0.0068-0.0145] unit decrease	Illumina [9339358] (imputed)	N
1227	chr1	84149798	84149799	rs11163801	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p31.1	PRKACB	rs11163801-?	NR	7E-7	(CE 18:0)	0.16784933	[0.1-0.23] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1227	chr1	84159659	84159660	rs140136672	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1p31.1	RP11-475O6.1	rs140136672-C	0.994	8E-6		0.3503	[0.2-0.5] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr1	84173557	84173558	rs6667561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p31.1	Intergenic	rs6667561-T	0.5609	5E-8		0.0107	[0.0068-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1227	chr1	84232747	84232748	rs17129289	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	TTLL7	rs17129289-G	0.011	7E-6	(Sleep duration )	0.02	[NR] min/d increase	Illumina [899892]	N
1227	chr1	84249934	84249935	rs10430064	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p31.1	NR	rs10430064-T	0.147	1E-8		0.00865822	[0.0057-0.0117] unit decrease	NR [9732723] (imputed)	N
1227	chr1	84254550	84254551	rs7552393	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1p31.1	intergenic	rs7552393-?	NR	5E-7	(TNFA)			Affymetrix [70897]	N
1227	chr1	84254734	84254735	rs7539409	20061627	Heinzen EL	2009-09-11	J Alzheimers Dis	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	1p31.1	TTLL7	rs7539409-?	0.18	1E-6				Illumina [~ 550000]	N
1227	chr1	84266790	84266791	rs2143757	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	1p31.1	SAMD13	rs2143757-G	NR	9E-9		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
1228	chr1	84314269	84314270	rs12723316	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p31.1	NR	rs12723316-G	NR	4E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1228	chr1	84353838	84353839	rs28726372	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p31.1	TTLL7	rs28726372-T	0.692539	9E-10		0.00907801	[0.0062-0.012] unit decrease	Affymetrix [12370749]	N
1228	chr1	84353838	84353839	rs28726372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p31.1	NR	rs28726372-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1228	chr1	84357224	84357225	rs618232	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	1p31.1	NR	rs618232-A	0.26	1E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
1228	chr1	84387631	84387632	rs10465746	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	TTLL7	rs10465746-A	0.447	8E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1229	chr1	84411237	84411238	rs532246	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	1p31.1	TTLL7	rs532246-G	0.74	7E-9		0.0071566	[0.0047-0.0096] unit decrease	NR [16367095] (imputed)	N
1229	chr1	84417584	84417585	rs41293013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p31.1	Intergenic	rs41293013-T	0.9855	2E-8		0.068	[0.044-0.092] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1229	chr1	84417584	84417585	rs41293013	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p31.1	NR	rs41293013-T	NR	2E-10		6.348	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1229	chr1	84417584	84417585	rs41293013	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p31.1	NR	rs41293013-?	NR	1E-7		5.29	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1229	chr1	84427051	84427052	rs1536166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p31.1		rs1536166-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1230	chr1	84622512	84622513	rs903263	23001122	Orr N	2012-09-23	Nat Genet	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male)	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	1p31.1	PRKACB	rs903263-?	NR	1E-6		1.27	[1.10-1.34]	Illumina [447760]	N
1230	chr1	84632844	84632845	rs7524898	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKACB	rs7524898-?	NR	4E-9		2.11067	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1230	chr1	84632844	84632845	rs7524898	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKACB	rs7524898-?	NR	2E-8	(male)	3.29753	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1231	chr1	84707270	84707271	rs11807612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p31.1		rs11807612-T	NR	6E-13		0.0218	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1231	chr1	84708943	84708944	rs11808517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1p31.1		rs11808517-T	0.397355	4E-12		0.0236558	[0.017-0.03] unit decrease	Illumina [13478928] (imputed)	N
1231	chr1	84717982	84717983	rs12088543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p31.1	NR	rs12088543-T	0.611909	4E-12		0.026758	[0.019-0.034] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1231	chr1	84728626	84728627	rs11163933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p31.1	NR	rs11163933-T	0.11254	5E-12				Affymetrix, Illumina [24588908] (imputed)	N
1231	chr1	84761347	84761348	rs1085093	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	1p31.1	GLTP	rs1085093-?	0.45	3E-6	(HDL-cholesterol)			Illumina [308011]	N
1231	chr1	84792972	84792973	rs315553	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p31.1	SAMD13	rs315553-C	0.173	4E-6	(Hip circumference change )	0.05	[NR] cm/y increase	Illumina [899892]	N
1232	chr1	84835698	84835699	rs17131635	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.1		rs17131635-?	NR	4E-8				NR [NR]	N
1232	chr1	84835698	84835699	rs17131635	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.1		rs17131635-?	NR	3E-8				NR [NR]	N
1232	chr1	84835698	84835699	rs17131635	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.1		rs17131635-?	NR	4E-8				NR [NR]	N
1232	chr1	84835698	84835699	rs17131635	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.1		rs17131635-?	NR	2E-8				NR [NR]	N
1232	chr1	84835698	84835699	rs17131635	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1p31.1		rs17131635-?	NR	4E-8				NR [NR]	N
1232	chr1	84835698	84835699	rs17131635	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1p31.1	NR	rs17131635-T	0.356	9E-6		0.015904061	[0.0089-0.0229] unit increase	Affymetrix [up to 6544775] (imputed)	N
1232	chr1	84864418	84864419	rs142900233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p31.1		rs142900233-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1232	chr1	84865229	84865230	rs12144715	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	1p31.1	DNASE2B	rs12144715-T	NR	7E-6		0.636	[0.36-0.91] ug/L decrease	NR [NR]	N
1232	chr1	84867147	84867148	rs1246386	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.3	SAMD13	rs1246386-?	NR	3E-7	(LPC 20:5)	0.16870725	[0.1-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1232	chr1	84868960	84868961	rs604708	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p22.3	NR	rs604708-C	0.970210567603748	8E-6	(IGP56)	0.4114	[0.23-0.59] unit decrease	Illumina [~ 2500000] (imputed)	N
1233	chr1	84965622	84965623	rs56212819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.3		rs56212819-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1234	chr1	85070035	85070036	rs2911600	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung cancer (survival time) in never smokers	1,569 European ancestry individuals	887 Japanese ancestry individuals	1p22.3	LINC01461	rs2911600-T	NR	6E-7	(EA)	2.02	[1.53-2.66]	Illumina [629283] (imputed)	N
1235	chr1	85197759	85197759	rs377634870	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (social interaction)	2,509 individuals	NA	1p22.3	intergenic	rs377634870-?	NR	5E-8		0.532	NR unit increase	Illumina [6900500] (imputed)	N
1235	chr1	85203060	85203061	rs140858719	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	1p22.3	SSX2IP	rs140858719-G	0.994	4E-8	(AA, Women)	0.502	[0.32-0.68] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1235	chr1	85220576	85220577	rs818517	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p22.3	AC104169.1	rs818517-A	0.2892	6E-6		0.0323	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1235	chr1	85226298	85226299	rs1750491	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1p22.3	LPAR3	rs1750491-?	NR	2E-6	(LPAR3)			Illumina [518997]	N
1235	chr1	85226812	85226813	rs17377079	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	1p22.3	LPAR3, SSX2IP	rs17377079-A	0.15	7E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1235	chr1	85268242	85268243	rs10782529	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	1p22.3	EDG7	rs10782529-C	0.36	4E-6	(percent change)	1.7	[1.11-2.29] percent increase	Illumina [796174]	N
1235	chr1	85290408	85290409	rs9728717	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	1p22.3	EDG7	rs9728717-T	NR	9E-6		0.14	[0.079-0.201] unit increase	Illumina [628922]	N
1235	chr1	85311191	85311192	rs1983853	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p22.3	LPAR3	rs1983853-C	0.88577	3E-11		0.0193463	[0.014-0.025] unit decrease	NR [13737936] (imputed)	N
1235	chr1	85311191	85311192	rs1983853	18840781	Grant SF	2008-10-07	Diabetes	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	1p22.3	EDG7	rs1983853-?	NR	2E-6		1.2	[1.11-1.29]	Illumina [up to 1000000]	N
1235	chr1	85318583	85318584	rs10127852	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1p22.3	LPAR3	rs10127852-?		2E-8				Illumina [563980]	N
1235	chr1	85321303	85321304	rs55800555	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LPAR3	rs55800555-?	NR	3E-8		0.679723	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1236	chr1	85332119	85332120	rs1325273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p22.3		rs1325273-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1236	chr1	85332119	85332120	rs1325273	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p22.3		rs1325273-?	NR	2E-23		0.0225622	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1236	chr1	85333181	85333182	rs12756373	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p22.3	LPAR3	rs12756373-A	0.91222	1E-12		0.0232058	[0.017-0.03] unit decrease	NR [13737936] (imputed)	N
1236	chr1	85350657	85350658	rs1886644	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	1p22.3	LPAR3	rs1886644-?		6E-6	(M)	22.9	[12.28-33.52] unit decrease	Illumina [693128]	N
1236	chr1	85356877	85356878	rs4243774	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking cessation	366 Bangladeshi ancestry former smoker males, 87 Bangladeshi ancestry former smoker females, 1,471 Bangladeshi ancestry current smoker males, 111 Bangladeshi ancestry current smoker females	NA	1p22.3	NR	rs4243774-?		2E-6				Illumina [1211988] (imputed)	N
1237	chr1	85466336	85466337	rs6690583	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	1p22.3	MCOLN2, MCOLN3	rs6690583-?	NR	2E-6		0.022	NR unit decrease	Affymetrix [NR]	N
1237	chr1	85528005	85528006	rs12034421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p22.3		rs12034421-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1237	chr1	85528005	85528006	rs12034421	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1p22.3	WDR63	rs12034421-A	0.3877	3E-10		1.05	NR	Affymetrix [9154080] (imputed)	N
1237	chr1	85581046	85581047	rs817464	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Disease severity in uveal melanoma (TNM stage 3 or 4 vs TNM stage 1 or 2)	330 European ancestry stage 3 or 4 cases, 255 European ancestry stage 1 or 2 cases	NA	1p22.3		rs817464-G	0.05	1E-6		3.15		Illumina [10258281] (imputed)	N
1238	chr1	85603050	85603051	rs114573015	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	1p22.3	WDR63, MIR4423	rs114573015-?	NR	6E-7		2.1		Illumina [6419662] (imputed)	N
1238	chr1	85603050	85603051	rs114573015	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	1p22.3	WDR63	rs114573015-?		6E-7				Illumina [6419662] (imputed)	N
1238	chr1	85608720	85608721	rs4907025	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p22.3	NR	rs4907025-G	0.083	1E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
1238	chr1	85614415	85614416	rs200536623	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	1p22.3	SYDE2	rs200536623-?	0.04	9E-6	(male)	4.527	[2.33-8.81]	Illumina [5595657] (imputed)	N
1238	chr1	85680407	85680408	rs11161548	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs11161548-A	0.3467	2E-8	(DDAH1)	0.06754	NR unit increase	Illumina [1671387] (imputed)	N
1238	chr1	85680407	85680408	rs11161548	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p22.3	SYDE2	rs11161548-A	0.4014	7E-6		0.0297	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1238	chr1	85682019	85682020	rs11161550	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.3	SYDE2	rs11161550-G	NR	2E-9		1.061008	NR	Affymetrix, Illumina [8278136] (imputed)	N
1238	chr1	85704434	85704435	rs7515154	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	1p22.3	intergenic	rs7515154-?	NR	4E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1239	chr1	85729819	85729820	rs35486093	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.3	C1orf52	rs35486093-G	NR	2E-31		1.2090436	NR	Affymetrix, Illumina [8278136] (imputed)	N
1239	chr1	85732940	85732941	rs962409	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs962409-C	0.4338	2E-11	(DDAH1)	0.07446	NR unit increase	Illumina [1671387] (imputed)	N
1239	chr1	85739684	85739685	rs6700749	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.3	C1orf52	rs6700749-?	NR	3E-6	(adenosine monophosphate)	0.436757	[0.25-0.62] unit increase	Affymetrix [at least 2500000] (imputed)	N
1239	chr1	85746631	85746632	rs116057745	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	1p22.3	intergenic	rs116057745-A	0.982	1E-14	(YKL-40)	31.092	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1239	chr1	85746992	85746993	rs12087340	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p22.3	BCL10	rs12087340-A	0.09	1E-20		1.21		Illumina [161311]	N
1239	chr1	85768378	85768379	rs17125439	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	1p22.3	Intergenic	rs17125439-?	NR	8E-6		1.51359	[1.2572-1.82226]	Illumina [~ 5900000] (imputed)	N
1239	chr1	85772008	85772009	rs233100	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p22.3	DDAH1	rs233100-G	NR	1E-6		1.08	[1.07-1.1]	Illumina [465434]	N
1239	chr1	85779605	85779606	rs72722664	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	1p22.3	DDAH1	rs72722664-A	NR	2E-6		30.6385	[17.99-43.29] unit increase	Illumina [6995140] (imputed)	N
1239	chr1	85780863	85780864	rs35079454	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p22.3	NR	rs35079454-?	NR	3E-10				Illumina [at least 7383741] (imputed)	N
1239	chr1	85785750	85785751	rs233112	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs233112-C	0.3937	8E-37	(DDAH1)	0.1309	NR unit decrease	Illumina [1671387] (imputed)	N
1239	chr1	85785750	85785751	rs233112	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs233112-C	0.3937	4E-14	(DDAH2)	0.01995	NR unit decrease	Illumina [1671387] (imputed)	N
1239	chr1	85786976	85786977	rs233115	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p22.3	LOC646626	rs233115-G	0.678299	3E-14	(dimethylarginine (SDMA + ADMA))	0.181	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
1239	chr1	85787333	85787334	rs1498374	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1498374-T	0.1916	2E-14	(DDAH1)	0.1112	NR unit decrease	Illumina [1671387] (imputed)	N
1239	chr1	85793745	85793746	rs2268667	25245031	Luneburg N	2014-09-21	Circ Cardiovasc Genet	Genome-wide association study of L-arginine and dimethylarginines reveals novel metabolic pathway for symmetric dimethylarginine.	Asymmetrical dimethylarginine levels	3,742 European ancestry individuals, 2,992 individuals	1,151  European ancestry individuals	1p22.3	DDAH1	rs2268667-A	0.343	4E-31		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [up to 2200000] (imputed)	N
1239	chr1	85794818	85794819	rs18582	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.3	BCL10	rs18582-?	NR	2E-11	(NG monomethyl arginine)	0.23768964	[0.17-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1239	chr1	85797109	85797110	rs28489187	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	1p22.3	DDAH1	rs28489187-G	0.216	1E-20		0.259	[0.20-0.31] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1239	chr1	85797109	85797110	rs28489187	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	1p22.3	DDAH1	rs28489187-G	0.216	1E-40		0.37	[0.32-0.42] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1239	chr1	85798074	85798075	rs2389913	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p22.3	NR	rs2389913-T	0.079	2E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
1239	chr1	85836072	85836073	rs79695640	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p22.3		rs79695640-?	NR	2E-10				NR [9705931] (imputed)	N
1239	chr1	85836072	85836073	rs79695640	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p22.3	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs79695640-?		2E-8				NR [7428630] (imputed)	N
1239	chr1	85838412	85838413	rs233051	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs233051-G	0.2805	3E-11	(DDAH1)	0.08541	NR unit increase	Illumina [1671387] (imputed)	N
1239	chr1	85845997	85845998	rs1884139	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	1p22.3	DDAH1	rs1884139-T	0.371	1E-18		0.18	[0.14-0.22] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1240	chr1	85863382	85863383	rs3949301	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p22.3	DDAH1	rs3949301-G	0.36	2E-32	(X - 24518)	0.391	[0.33-0.46] unit increase	Illumina [7750367] (imputed)	N
1240	chr1	85874494	85874495	rs6657732	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs6657732-T	0.4983	3E-9	(DDAH2)	0.01596	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr1	85874494	85874495	rs6657732	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs6657732-T	0.4983	2E-20	(DDAH1)	0.1018	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr1	85877097	85877098	rs1554597	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p22.3	DDAH1	rs1554597-C	0.36	6E-16	(X - 12097)	0.335	[0.25-0.42] unit increase	Illumina [7750367] (imputed)	N
1240	chr1	85878207	85878208	rs12138852	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p22.3		rs12138852-T	0.21	4E-22		9.67	z score increase	Affymetrix [9061022] (imputed)	N
1240	chr1	85883896	85883897	rs114751860	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	1p22.3	DDAH1	rs114751860-T	0.013	5E-10	(YKL-40)	40.152	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1240	chr1	85884771	85884772	rs12123745	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.3		rs12123745-C	0.21	8E-18		8.61	z score increase	Affymetrix [9061022] (imputed)	N
1240	chr1	85884771	85884772	rs12123745	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.3	NR	rs12123745-C	0.212	1E-17				NR [9056863] (imputed)	N
1240	chr1	85887774	85887775	rs6697083	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p22.3	NR	rs6697083-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1240	chr1	85887774	85887775	rs6697083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p22.3		rs6697083-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1240	chr1	85897569	85897570	rs17384381	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p22.3	NR	rs17384381-?	NR	3E-9				Illumina [at least 7383741] (imputed)	N
1240	chr1	85904337	85904338	rs539714	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs539714-C	0.1742	4E-11	(DDAH1)	0.09997	NR unit decrease	Illumina [1671387] (imputed)	N
1240	chr1	85904984	85904985	rs12130591	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p22.3	NR	rs12130591-A	0.2145	2E-8				NR [9056863] (imputed)	N
1240	chr1	85907624	85907625	rs11161616	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs11161616-T	0.2439	6E-11	(DDAH1)	0.08619	NR unit decrease	Illumina [1671387] (imputed)	N
1240	chr1	85909012	85909013	rs57996130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p22.3		rs57996130-C	NR	5E-9		0.0235	[0.016-0.031] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1240	chr1	85910699	85910700	rs61783053	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p22.3	NR	rs61783053-A	0.079	2E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
1240	chr1	85910699	85910700	rs61783053	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p22.3	NR	rs61783053-?	NR	3E-8				Illumina [7760689] (imputed)	N
1240	chr1	85915182	85915183	rs11587876	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p22.3	DDAH1	rs11587876-A	0.81	4E-9		1.09		Illumina [161311]	N
1240	chr1	85918100	85918101	rs1146382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1146382-C	0.4564	3E-21	(DDAH1)	0.1018	NR unit decrease	Illumina [1671387] (imputed)	N
1240	chr1	85918100	85918101	rs1146382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1146382-C	0.4564	2E-9	(DDAH2)	0.01585	NR unit decrease	Illumina [1671387] (imputed)	N
1240	chr1	85918100	85918101	rs1146382	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.3	CYR61	rs1146382-?	NR	1E-9	(NG monomethyl arginine)	0.20716208	[0.14-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1240	chr1	85923919	85923920	rs877041	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs877041-A	0.3624	4E-9	(DDAH1)	0.06846	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr1	85940248	85940249	rs1403951	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1403951-C	0.4861	3E-8	(DDAH2)	0.01476	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr1	85940248	85940249	rs1403951	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1403951-C	0.4861	1E-14	(DDAH1)	0.0856	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr1	85979831	85979832	rs11806789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.3		rs11806789-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1241	chr1	85984252	85984253	rs2773130	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Hyphomonas abundance in stool	5,959 Finnish ancestry individuals	NA	1p22.3		rs2773130-G	0.277454	1E-8		0.0249382	[0.016-0.034] unit decrease	Illumina [7980478] (imputed)	N
1241	chr1	85990816	85990817	rs621287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs621287-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1241	chr1	85993005	85993006	rs3119165	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p22.3		rs3119165-A	0.7712	2E-12		0.1028	[0.074-0.131] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1241	chr1	86010247	86010248	rs11161636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p22.3		rs11161636-G	NR	3E-14		0.0099	[0.0074-0.0124] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1241	chr1	86010247	86010248	rs11161636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p22.3		rs11161636-G	0.477097	2E-11		0.0133401	[0.0094-0.0173] unit decrease	Illumina [13479295] (imputed)	N
1241	chr1	86010247	86010248	rs11161636	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p22.3	DDAH1	rs11161636-?	NR	2E-11		0.018944396	[0.013-0.024] unit decrease	Illumina [27896057] (imputed)	N
1241	chr1	86032289	86032290	rs191024636	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p22.3	NR	rs191024636-C	0.00809584	9E-10		0.234207	[0.16-0.31] unit decrease	Affymetrix [17914406] (imputed)	N
1241	chr1	86040106	86040107	rs12034319	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p22.3	DDAH1	rs12034319-A	0.2191	1E-9		0.1278	[0.087-0.169] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1241	chr1	86040636	86040637	rs112584068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	DDAH1	rs112584068-A	NR	4E-8		0.0218598	[0.014-0.03] unit increase	Affymetrix [321114] (imputed)	N
1241	chr1	86047310	86047311	rs9658584	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p22.3	CYR61	rs9658584-C	0.2018	7E-9		0.1421	[0.094-0.19] mmHg decrease	Affymetrix [NR] (imputed)	N
1241	chr1	86048525	86048526	rs148330006	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	1p22.3		rs148330006-?	NR	1E-10		0.0678198	[0.047-0.089] unit decrease	NR [9800000] (imputed)	N
1241	chr1	86048525	86048526	rs148330006	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p22.3	CCN1	rs148330006-C	0.9916	5E-12		0.0686	[0.049-0.088] unit increase	Affymetrix [18391927] (imputed)	N
1241	chr1	86048525	86048526	rs148330006	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	1p22.3	CCN1	rs148330006-C	0.992	2E-7		0.07	[0.045-0.095] unit increase	Affymetrix [18391927] (imputed)	N
1241	chr1	86048525	86048526	rs148330006	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	1p22.3	CCN1	rs148330006-C	0.992	5E-6		0.07	[0.041-0.099] unit increase	Affymetrix [18391927] (imputed)	N
1241	chr1	86049822	86049823	rs7543409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	CYR61	rs7543409-T	NR	2E-8		0.0159416	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1241	chr1	86049822	86049823	rs7543409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p22.3	CYR61	rs7543409-T	NR	3E-9		0.0169112	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1241	chr1	86066569	86066570	rs78325101	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	1p22.3	CYR61	rs78325101-C	NR	4E-8		0.501	[0.32-0.68] unit increase	NR [11024754] (imputed)	N
1241	chr1	86072215	86072216	rs10873710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs10873710-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1241	chr1	86072407	86072408	rs11578464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p22.3	RP11-290M5.2	rs11578464-G	NR	1E-8		0.0161454	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1241	chr1	86073858	86073859	rs10782553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p22.3	NR	rs10782553-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1241	chr1	86111604	86111605	rs78923700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p22.3	ZNHIT6	rs78923700-G	NR	2E-8		0.0159869	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1242	chr1	86125752	86125753	rs10493773	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1p22.3	ZNHIT6, COL24A1	rs10493773-G	0.29	9E-6	(women)	0.082	[0.047-0.117] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1242	chr1	86139328	86139329	rs181436801	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	1p22.3		rs181436801-G	0.01063	6E-6		4.334	[2.295-8.185]	Affymetrix [7975321] (imputed)	N
1242	chr1	86226351	86226352	rs17400787	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p22.3	COL24A1	rs17400787-A	0.1777	5E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1242	chr1	86235042	86235043	rs67597676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs67597676-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1243	chr1	86248137	86248138	rs12075929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs12075929-A	NR	4E-8		0.0166965	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1243	chr1	86251835	86251836	rs313710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs313710-C	NR	1E-12		0.0205466	[0.015-0.026] unit increase	Affymetrix [321114] (imputed)	N
1243	chr1	86251835	86251836	rs313710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs313710-C	NR	3E-9		0.0172492	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1243	chr1	86253710	86253710	rs746827412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p22.3	COL24A1	rs746827412-T	NR	3E-11		0.0205249	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1243	chr1	86258602	86258603	rs313732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p22.3		rs313732-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1243	chr1	86260147	86260148	rs313734	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p22.3	NR	rs313734-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1243	chr1	86260147	86260148	rs313734	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs313734-?	NR	7E-24				Affymetrix [~ 8270000] (imputed)	N
1243	chr1	86262604	86262605	rs313736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p22.3	COL24A1	rs313736-T	NR	5E-8		0.0174269	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
1243	chr1	86262604	86262605	rs313736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p22.3	COL24A1	rs313736-T	NR	6E-10		0.0194657	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1243	chr1	86264024	86264025	rs380654	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p22.3	NR	rs380654-G	0.4	2E-14		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1243	chr1	86264024	86264025	rs380654	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p22.3	NR	rs380654-G	0.4	5E-8				Affymetrix [2446094] (imputed)	N
1243	chr1	86268031	86268032	rs12727784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.3		rs12727784-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1243	chr1	86273450	86273451	rs313741	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p22.3	NA	rs313741-A	0.5511	2E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1243	chr1	86289081	86289082	rs1842579	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	1p22.3	COL24A1	rs1842579-?	0.05137	2E-6		8.618	[NR]	Affymetrix [559609]	N
1243	chr1	86302707	86302708	rs4912446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs4912446-A	NR	8E-10		0.0176022	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1243	chr1	86304682	86304683	rs313699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs313699-T	NR	3E-10		0.0186015	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1243	chr1	86326623	86326624	rs6657706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs6657706-T	NR	1E-8		0.0184434	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1243	chr1	86326623	86326624	rs6657706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs6657706-T	NR	3E-10		0.020457	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1243	chr1	86326623	86326624	rs6657706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs6657706-T	NR	3E-10		0.0205848	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1243	chr1	86330769	86330770	rs2046158	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p22.3	NR	rs2046158-?	NR	1E-6				Affymetrix [NR]	N
1243	chr1	86359427	86359428	rs112893074	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs112893074-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1243	chr1	86374520	86374521	rs183687254	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p22.3	NR	rs183687254-?	NR	5E-6		0.056575	[0.032-0.081] unit increase	Affymetrix [805426] (imputed)	N
1244	chr1	86378481	86378482	rs12734458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p22.3	NR	rs12734458-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1244	chr1	86378481	86378482	rs12734458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs12734458-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1244	chr1	86382676	86382677	rs140304204	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		COL24A1	rs140304204-?	NR	7E-9	(female)	0.575293	[NR] unit increase	Affymetrix [NR] (imputed)	N
1244	chr1	86438018	86438019	rs573444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs573444-T	NR	1E-8		0.0163605	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1244	chr1	86441105	86441106	rs4912440	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.3	COL24A1	rs4912440-G	NR	1E-8		0.0189879	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1244	chr1	86441105	86441106	rs4912440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.3	NR	rs4912440-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1244	chr1	86457374	86457375	rs9988431	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9988431-G	0.843349	1E-8		0.072074	[0.047-0.097] increase	Affymetrix [11014269] (imputed)	N
1244	chr1	86487913	86487914	rs11161721	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Preterm birth (maternal effect) (maternal pre-pregnancy BMI interaction)	329 African American normal weight preterm birth mothers, 514 African American normal weight term birth mothers, 463 African American overweight or obese preterm birth mothers, 580 African American overweight or obese term birth mothers	NA	1p22.3	COL24A1	rs11161721-A	.191	4E-9				Affymetrix, Illumina [9929081] (imputed)	N
1244	chr1	86488231	86488232	rs641712	30706531	Tao F	2019-01-31	Ann Neurol	Variation in SIPA1L2 is Correlated with Phenotype Modification in CMT Type 1A.	Reduced foot dorsiflexion strength in Charcot-Marie-Tooth disease type 1A	183 European ancestry cases severe cases, 147 European ancestry mild cases	55 Asian ancestry severe cases, 25 Asian ancestry mild cases	1p22.3	COL24A1	rs641712-G	NR	9E-6	(EA)	2.415459	[1.64-3.56]	Illumina [633827]	N
1245	chr1	86574490	86574490	rs369466863	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 132)	19,670 European ancestry individuals	NA	1p22.3		rs369466863-?	NR	2E-8				NR [9705931] (imputed)	N
1245	chr1	86600395	86600396	rs568532609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.3		rs568532609-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1245	chr1	86614150	86614151	rs12068500	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1p22.3	NR	rs12068500-T		9E-9		0.14	[0.1-0.18] unit increase	NR [NR]	N
1245	chr1	86614150	86614151	rs12068500	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1p22.3	COL24A1	rs12068500-G	0.91	6E-14				Affymetrix, Illumina [8002429] (imputed)	N
1245	chr1	86621452	86621453	rs12076366	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p22.3	COL24A1	rs12076366-T	0.907	8E-14		0.164	[0.12-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1246	chr1	86644261	86644262	rs12143200	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	1p22.3	COL24A1	rs12143200-G	0.03	2E-6		1.7857143	[1.41-2.27]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1246	chr1	86648531	86648532	rs9804094	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p22.3		rs9804094-C	0.33	6E-16		8.09	z score increase	Affymetrix [9061022] (imputed)	N
1246	chr1	86653340	86653341	rs10873761	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.3		rs10873761-C	0.33	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1246	chr1	86657840	86657841	rs7535519	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.3	NR	rs7535519-G	0.3481	5E-13				NR [9056863] (imputed)	N
1246	chr1	86669281	86669282	rs11161771	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p22.3	COL24A1, ODF2L	rs11161771-A	0.3168	2E-9		0.0915	[0.062-0.121] unit increase	Affymetrix [~ 11900000] (imputed)	N
1246	chr1	86691284	86691285	rs2279948	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1p22.3	COL24A1	rs2279948-?	NR	6E-14		0.1708	[0.13-0.22] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1246	chr1	86707582	86707583	rs61800638	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1p22.3	COL24A1	rs61800638-G	0.0438	2E-6		3.387534	[2.88-3.89]	Illumina [8809853] (imputed)	N
1246	chr1	86714252	86714253	rs6674512	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p22.3	NR	rs6674512-A	0.0802983	4E-10		0.035103	[0.024-0.046] unit decrease	NR [19129689] (imputed)	N
1246	chr1	86731428	86731429	rs114304737	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p22.3	Intergenic	rs114304737-A	0.997	1E-6	(AA)	0.159	unit increase	Illumina [NR] (imputed)	N
1246	chr1	86731428	86731429	rs114304737	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p22.3	Intergenic	rs114304737-A	0.997	3E-6	(AA)	0.771	NR unit increase	Illumina [NR] (imputed)	N
1246	chr1	86736891	86736892	rs17129031	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p22.3	COL24A1, ODF2L	rs17129031-T	0.9232	1E-8		0.153	[0.1-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1246	chr1	86752917	86752918	rs55916418	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p22.3	Intergenic	rs55916418-T	0.999	2E-6	(AA)	1.159	NR unit increase	Illumina [NR] (imputed)	N
1247	chr1	86799386	86799387	rs146496015	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	1p22.3	ODF2L	rs146496015-T	0.06	3E-7		1.61	[1.34-1.94]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1247	chr1	86810652	86810653	rs448008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.3		rs448008-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1247	chr1	86822230	86822231	rs385437	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p22.3	ODF2L	rs385437-A	0.8573	3E-10		0.1552	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1247	chr1	86823502	86823503	rs17363646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p22.3		rs17363646-G	NR	4E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1248	chr1	86910263	86910264	rs2249296	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	1p22.3	CLCA2	rs2249296-C	0.78	1E-6	(Ileal involvement)	1.69	[1.35-2.13]	Illumina [539846]	N
1248	chr1	86916199	86916200	rs55807512	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	1p22.3	CLCA2	rs55807512-C	0.04	3E-9		2.0833335	[1.64-2.63]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1248	chr1	86916199	86916200	rs55807512	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	1p22.3	CLCA2	rs55807512-C	0.04	2E-6		2.1276596	[1.56-2.86]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1248	chr1	86925496	86925497	rs149725802	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	1p22.3	intergenic	rs149725802-?	NR	7E-6		0.275	[0.14-0.41] unit decrease	Illumina [at least 13000000] (imputed)	N
1248	chr1	86947067	86947068	rs5744352	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	1p22.3	NR	rs5744352-T	0.0507208	8E-6		1.062	[1.03-1.09]	Affymetrix [7791636] (imputed)	N
1248	chr1	87003471	87003472	rs11161841	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	1p22.3	intergenic	rs11161841-A	0.114	7E-7		0.178	[0.3-0.44] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1248	chr1	87012308	87012309	rs113894048	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1p22.3	CLCA4	rs113894048-G	0.04	4E-7	(Hispanic/Latino)	0.61	[0.37-0.85] unit increase	Illumina [up to 13042663] (imputed)	N
1249	chr1	87045515	87045516	rs116237296	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	1p22.3	NR	rs116237296-G	NR	7E-7		0.5437	[0.33-0.76] SD units decrease	NR [10700000] (imputed)	N
1249	chr1	87051200	87051201	rs1953652	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p22.3	NR	rs1953652-C	0.653295152202937	9E-6	(IGP57)	0.1426	[0.08-0.206] unit increase	Illumina [~ 2500000] (imputed)	N
1249	chr1	87051200	87051201	rs1953652	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p22.3	NR	rs1953652-C	0.653295152202937	5E-6	(IGP13)	0.147	[0.084-0.21] unit increase	Illumina [~ 2500000] (imputed)	N
1249	chr1	87051200	87051201	rs1953652	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p22.3	NR	rs1953652-C	0.653295152202937	4E-6	(IGP53)	0.1488	[0.086-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
1249	chr1	87092555	87092556	rs4578190	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p22.3	NR	rs4578190-?	NR	5E-7		0.104135	[0.064-0.145] unit increase	NR [13958389] (imputed)	N
1250	chr1	87165087	87165088	rs142426575	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	1p22.3	NR	rs142426575-C	NR	2E-6		0.5736	[0.33-0.81] SD units decrease	NR [10700000] (imputed)	N
1250	chr1	87206715	87206716	rs6687821	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	1p22.3	NR	rs6687821-?	NR	5E-7		0.0419	[0.025-0.058] unit decrease	Illumina [at least 560000] (imputed)	N
1251	chr1	87350062	87350063	rs498135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p22.3	Intergenic	rs498135-T	0.7966	1E-8	(MTAG)	0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1252	chr1	87531852	87531853	rs141319665	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	1p22.3	HS2ST1	rs141319665-T	0.023	5E-6		3.34	[1.99-5.62]	Illumina [7959153] (imputed)	N
1253	chr1	87613357	87613358	rs7553864	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	1p22.3	AK002179	rs7553864-?	0.39	3E-6	(SMKDU)	0.08	[NR] years increase	Illumina [~ 518000]	N
1253	chr1	87633483	87633483	rs113198643	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.3	NR	rs113198643-?	0.132	6E-10	(Posterior Cingulate)	7.8665276	[5.37-10.36] unit decrease	Affymetrix, Illumina [NR]	N
1254	chr1	87699331	87699332	rs60380162	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	1p22.3	LOC101927844	rs60380162-?		8E-6	(EA)	0.119	[0.067-0.171] unit increase	Illumina [7205781] (imputed)	N
1254	chr1	87705030	87705031	rs6576878	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1p22.3	LMO4	rs6576878-G	0.43	6E-6	(eosinophil count)	0.053	[0.03-0.07] unit increase	Illumina [2178645] (imputed)	N
1254	chr1	87729361	87729362	rs35329929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1p22.3		rs35329929-C	NR	9E-21		0.0257	[0.02-0.031] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1254	chr1	87738946	87738947	rs11804386	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p22.3	LOC339524/LMO4	rs11804386-A	0.332415	3E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1254	chr1	87738946	87738947	rs11804386	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p22.3	LOC339524/LMO4	rs11804386-A	0.332415	8E-9		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1254	chr1	87739218	87739219	rs1537061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1p22.3	NR	rs1537061-C	0.098713	3E-13		0.025079	[0.018-0.032] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1254	chr1	87739218	87739219	rs1537061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1p22.3	intergenic	rs1537061-C	0.0983	3E-15		0.04627965	[0.035-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87739218	87739219	rs1537061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1p22.3	intergenic	rs1537061-C	0.0983	2E-16		0.04793435	[0.037-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87739218	87739219	rs1537061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1p22.3	intergenic	rs1537061-C	0.0983	6E-15		0.04582239	[0.034-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87748884	87748885	rs6703781	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	1p22.3	LOC101927844, LMO4	rs6703781-?	NR	1E-24		0.06144	[0.05-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
1254	chr1	87748885	87748886	rs6692718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	1p22.3		rs6692718-G	0.336673	4E-8		0.0257864	[0.017-0.035] unit increase	Illumina [13470073] (imputed)	N
1254	chr1	87750852	87750853	rs11161968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p22.3		rs11161968-G	NR	4E-30		0.0268	[0.022-0.031] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1254	chr1	87751378	87751379	rs1888341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	1p22.3	NR	rs1888341-G	0.666338	3E-30		0.059984	[0.05-0.07] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1254	chr1	87751378	87751379	rs1888341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.3	NR	rs1888341-A	0.151214	5E-38				Affymetrix, Illumina [19905671] (imputed)	N
1254	chr1	87751669	87751670	rs6672038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	1p22.3		rs6672038-T	0.337072	3E-34		0.0579126	[0.049-0.067] unit decrease	Illumina [13469940] (imputed)	N
1254	chr1	87751669	87751670	rs6672038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.3		rs6672038-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.3	NR	rs6684992-T	0.156164	1E-37				Affymetrix, Illumina [19872809] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p22.3	NR	rs6684992-T	0.119465	6E-35		0.037659	[0.032-0.044] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	1p22.3	LOC101927844, LMO4	rs6684992-?	NR	7E-10		0.03674	[0.025-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p22.3	intergenic	rs6684992-T	0.1198	7E-9		0.03189202	[0.021-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p22.3	intergenic	rs6684992-T	0.1199	2E-14		0.04188251	[0.031-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p22.3	intergenic	rs6684992-T	0.1199	8E-13		0.03950585	[0.029-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87751999	87752000	rs6684992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p22.3	intergenic	rs6684992-T	0.1198	2E-14		0.04197895	[0.031-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1254	chr1	87752271	87752272	rs199897763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p22.3		rs199897763-G	0.118759	2E-30		0.039166644	[0.032-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1254	chr1	87752271	87752272	rs199897763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p22.3		rs199897763-G	0.118767	4E-26		0.036190454	[0.029-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1254	chr1	87779216	87779217	rs12118297	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	1p22.3	LMO4	rs12118297-G	0.62	4E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [668499] (imputed)	N
1254	chr1	87781736	87781737	rs35915391	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	1p22.3	NR	rs35915391-G	0.6487	2E-8		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1254	chr1	87794595	87794596	rs141655075	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p22.3	LMO4	rs141655075-C	0.96119	3E-8		0.0301264	[0.02-0.041] unit increase	NR [16516521] (imputed)	N
1255	chr1	87850494	87850495	rs1415174	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p22.3	NR	rs1415174-C	0.7544	6E-6	(EA)	0.0328	[0.018-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1255	chr1	87851419	87851420	rs11161996	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	1p22.3	LOC100505768	rs11161996-C	0.6498	8E-7		1.1040659	[1.06-1.15]	Illumina [4946503] (imputed)	N
1255	chr1	87857968	87857969	rs751	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.3	HS2ST1	rs751-?	NR	8E-6	(3-hydroxyanthranilic acid)	0.27447256	[0.15-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1255	chr1	87873699	87873700	rs59373415	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.3	NR	rs59373415-C	0.8347	2E-11	(Precuneus)	19.890635	[14.07-25.71] unit increase	Affymetrix, Illumina [NR]	N
1255	chr1	87881549	87881550	rs10873841	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.3		rs10873841-C	0.16	2E-12		7.01	z score increase	Affymetrix [9061022] (imputed)	N
1255	chr1	87881549	87881550	rs10873841	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.3	NR	rs10873841-C	0.1604	3E-14				NR [9056863] (imputed)	N
1255	chr1	87893131	87893132	rs2152735	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1p22.3	LMO4	rs2152735-A	0.33	7E-18		0.3061	[0.24-0.38] unit decrease	Affymetrix [19941912] (imputed)	N
1255	chr1	87913175	87913176	rs11162019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p22.3	NR	rs11162019-T	0.363	7E-10		0.00690692	[0.0047-0.0091] unit decrease	NR [9732723] (imputed)	N
1255	chr1	87913175	87913176	rs11162019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p22.3	NR	rs11162019-T	0.363	5E-9		0.015494716	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1255	chr1	87928668	87928669	rs61771715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p22.3		rs61771715-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1256	chr1	88064767	88064768	rs74458710	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1p22.3	RNA5SP52	rs74458710-T	0.0196	8E-6		0.2206	[0.12-0.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1256	chr1	88064856	88064857	rs72953990	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait rhythm	2,946 individuals	NA	1p22.3	LMO4	rs72953990-A	0.14	2E-8	(Single support time)	0.0069	[0.0045-0.0093] unit increase	Illumina [6200000] (imputed)	N
1256	chr1	88064856	88064857	rs72953990	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait rhythm	2,946 individuals	NA	1p22.3	LMO4	rs72953990-A	0.14	2E-7		0.192	[0.12-0.26] unit decrease	Illumina [6200000] (imputed)	N
1256	chr1	88068107	88068108	rs9988636	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	1p22.3	LMO4	rs9988636-?	0.860735	9E-7		1.4610485	[1.26-1.7]	Affymetrix, Illumina [NR] (imputed)	N
1257	chr1	88096950	88096951	rs115513158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.3	NR	rs115513158-A	0.0507983	6E-21				Affymetrix, Illumina [24588908] (imputed)	N
1257	chr1	88102436	88102437	rs140436199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p22.3		rs140436199-A	NR	1E-16		0.0363	[0.028-0.045] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1257	chr1	88102436	88102437	rs140436199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p22.3		rs140436199-A	0.057364	2E-27		0.052493278	[0.043-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr1	88102436	88102437	rs140436199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p22.3		rs140436199-A	0.057383	4E-19		0.043094452	[0.034-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr1	88105489	88105495	rs151136305	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p22.3	intergenic	rs151136305-A	0.0568	3E-11		0.05271428	[0.037-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1257	chr1	88112141	88112142	rs148878721	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p22.3	intergenic	rs148878721-T	NR	9E-6		0.3931467	[0.21-0.58] unit decrease	Illumina [> 6200000] (imputed)	N
1257	chr1	88117422	88117423	rs4534351	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	1p22.3	NR	rs4534351-T	0.051	5E-7		0.2548	[0.16-0.35] unit increase	Illumina [up to 730525]	N
1257	chr1	88128662	88128663	rs1414648	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs1414648-C	0.0122	3E-10	(DDB1)	0.2463	NR unit increase	Illumina [1671387] (imputed)	N
1257	chr1	88132379	88132380	rs983332	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	1p22.3	LMO4	rs983332-A	0.21	5E-6				Illumina [283348]	N
1257	chr1	88142568	88142569	rs77176926	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	1p22.3	LMO4	rs77176926-G	NR	4E-6		0.324	[0.19-0.46] unit decrease	Illumina [6319684] (imputed)	N
1257	chr1	88156922	88156923	rs17426269	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p22.3		rs17426269-A	NR	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1257	chr1	88156922	88156923	rs17426269	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p22.3	intergenic	rs17426269-A	0.15	2E-8	(EA)	1.05	[1.02-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1257	chr1	88173983	88173984	rs12120466	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	1p22.3	LMO4, PKN2	rs12120466-?	NR	1E-10		1.1695906	[1.12-1.23]	Illumina [13729857] (imputed)	N
1257	chr1	88190036	88190037	rs6662386	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	1p22.3	LMO4	rs6662386-C	0.44	7E-20		0.051711	[0.041-0.063] unit increase	Affymetrix [10109774] (imputed)	N
1257	chr1	88192229	88192230	rs305460	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	1p22.3	intergenic	rs305460-?	NR	5E-6	(Male, Pre-puberty)	0.115	[0.066-0.164] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1257	chr1	88195246	88195247	rs35638741	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1p22.3	LINC01364	rs35638741-?	NR	3E-8		0.073	[0.047-0.099] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1257	chr1	88205218	88205218	rs11396834	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p22.3	NR	rs11396834-?	NR	8E-9	(left inferior parietal)			NR [9227495] (imputed)	N
1257	chr1	88210715	88210716	rs56391074	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1p22.3	NR	rs56391074-AT	NR	5E-10		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1257	chr1	88210715	88210716	rs56391074	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1p22.3	RP11-60A14.1	rs56391074-AT	0.38	2E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1258	chr1	88213013	88213014	rs12139208	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p22.3	LINC01364, PKN2-AS1	rs12139208-T	NR	7E-8		0.0394	unit increase	Illumina [15409056] (imputed)	N
1258	chr1	88213013	88213014	rs12139208	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1p22.3	LOC100505768	rs12139208-T	0.38	1E-8				Affymetrix, Illumina [8002429] (imputed)	N
1258	chr1	88213013	88213014	rs12139208	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	1p22.3	LOC100505768	rs12139208-T	0.38	6E-7		1.09	NR	Affymetrix [at least 8002429] (imputed)	N
1258	chr1	88213013	88213014	rs12139208	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p22.3	Intergenic	rs12139208-T	0.379	9E-10		0.08	[0.055-0.105] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1258	chr1	88216935	88216936	rs305437	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.3	NR	rs305437-A	0.1199	2E-10	(Inferior Parietal)	29.606716	[20.48-38.73] unit increase	Affymetrix, Illumina [NR]	N
1258	chr1	88222428	88222429	rs305426	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p22.3	NR	rs305426-?	NR	2E-10	(left inferior parietal)			NR [9227495] (imputed)	N
1258	chr1	88225812	88225813	rs305418	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p22.3	NR	rs305418-?	NR	4E-8	(right inferior parietal)			NR [9227495] (imputed)	N
1258	chr1	88226328	88226329	rs35214987	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	1p22.3	intergenic	rs35214987-G	0.4779	9E-7	(Phonemic Fluency)	3.3262	[2.02-4.63] unit increase	Affymetrix [> 371951] (imputed)	N
1258	chr1	88227119	88227120	rs41461152	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	1p22.3	LMO4, PKN2-AS1	rs41461152-T	NR	4E-9		1.09	1.06-1.12	Affymetrix [at least 665500] (imputed)	N
1258	chr1	88234835	88234836	rs305405	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p22.3	intergenic	rs305405-A	0.785172077818723	2E-6	(C_Alphaproteobacteria_RNT)	0.171463	[0.1-0.24] unit decrease	Illumina [7711310] (imputed)	N
1258	chr1	88239607	88239608	rs17130142	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1p22.3	LOC100505768, PKN2	rs17130142-?	NR	2E-7		8.641	unit increase (EA, Australian cohort)	Illumina [610255]	N
1258	chr1	88255013	88255014	rs80204731	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1p22.3		rs80204731-?	NR	5E-10				NR [9705931] (imputed)	N
1258	chr1	88269968	88269969	rs147753572	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.3	NR	rs147753572-A	0.9795	2E-8	(Pericalcarine)	21.359539	[13.96-28.76] unit increase	Affymetrix, Illumina [NR]	N
1259	chr1	88349900	88349901	rs77285343	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	1p22.3		rs77285343-?	NR	4E-6		1.69	[1.351-2.115]	Affymetrix [7975321] (imputed)	N
1259	chr1	88351510	88351511	rs12077852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs12077852-G	0.02439	4E-10	(PLPBP)	0.05329	NR unit decrease	Illumina [1671387] (imputed)	N
1259	chr1	88351510	88351511	rs12077852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs12077852-G	0.02439	2E-8	(USP14)	0.01824	NR unit decrease	Illumina [1671387] (imputed)	N
1259	chr1	88351510	88351511	rs12077852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs12077852-G	0.02439	1E-8	(RAD23B)	0.03796	NR unit decrease	Illumina [1671387] (imputed)	N
1259	chr1	88351510	88351511	rs12077852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.3	NR	rs12077852-G	0.02439	1E-8	(AARS)	0.1115	NR unit decrease	Illumina [1671387] (imputed)	N
1259	chr1	88395076	88395077	rs17130215	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	1p22.2	NR	rs17130215-?		3E-6				Illumina [892589]	N
1259	chr1	88399386	88399387	rs17130220	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p22.2	NR	rs17130220-?	NR	7E-9				Affymetrix [NR]	N
1259	chr1	88411098	88411099	rs1154728	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p22.2	NR	rs1154728-C	0.281	2E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1259	chr1	88416589	88416590	rs6691335	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	1p22.2	NR	rs6691335-C	0.0984	5E-7		1.098901	[1.06-1.14]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1259	chr1	88423396	88423397	rs1413536	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p22.2	STIL, CMPK1, FOXE3, FOXD2	rs1413536-?		1E-10				NR [7428630] (imputed)	N
1259	chr1	88423396	88423397	rs1413536	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p22.2	NR	rs1413536-?		2E-12				NR [7428630] (imputed)	N
1259	chr1	88423396	88423397	rs1413536	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.2	NR	rs1413536-T	0.51	1E-12	(Inferior Parietal)	21.629944	[15.65-27.61] unit increase	Affymetrix, Illumina [NR]	N
1259	chr1	88423965	88423966	rs2991716	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p22.2		rs2991716-C	0.48	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
1259	chr1	88423965	88423966	rs2991716	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.2		rs2991716-C	0.48	2E-18		8.78	z score increase	Affymetrix [9061022] (imputed)	N
1259	chr1	88423965	88423966	rs2991716	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	1p22.2	NR	rs2991716-?		2E-8				NR [7428630] (imputed)	N
1259	chr1	88423965	88423966	rs2991716	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p22.2	NR	rs2991716-?	NR	1E-8	(right inferior parietal)			NR [9227495] (imputed)	N
1259	chr1	88429023	88429024	rs11583393	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p22.2	NR	rs11583393-A	0.249	4E-8	(EA)	0.0396	[0.025-0.054] unit decrease	Illumina [~ 11800000] (imputed)	N
1259	chr1	88429256	88429257	rs3008452	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p22.2		rs3008452-C	0.49	8E-18		8.6	z score increase	Affymetrix [9061022] (imputed)	N
1259	chr1	88429256	88429257	rs3008452	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p22.2	NR	rs3008452-C	0.4712	3E-10				NR [9056863] (imputed)	N
1259	chr1	88429256	88429257	rs3008452	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p22.2		rs3008452-?	NR	1E-12				NR [9705931] (imputed)	N
1259	chr1	88429256	88429257	rs3008452	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p22.2	NR	rs3008452-?	NR	4E-9	(left inferior parietal)			NR [9227495] (imputed)	N
1259	chr1	88433628	88433629	rs3008451	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.2	NR	rs3008451-T	0.483	1E-17				NR [9056863] (imputed)	N
1259	chr1	88436991	88436992	rs59733471	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	1p22.2	intergenic	rs59733471-?	NR	6E-9		0.00311667	[-0.00309-0.00932] unit decrease	Affymetrix [25921788] (imputed)	N
1259	chr1	88436991	88436992	rs59733471	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	1p22.2	intergenic	rs59733471-?	NR	6E-9		0.0183466	[0.012-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
1259	chr1	88446235	88446236	rs17130230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	1p22.2		rs17130230-A	NR	3E-8		0.1193	[0.077-0.162] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1259	chr1	88448379	88448380	rs139734888	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1p22.2		rs139734888-C	NR	5E-8		0.87617		Affymetrix, Illumina [62056310] (imputed)	N
1259	chr1	88454260	88454261	rs183093970	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	1p22.2	intergenic	rs183093970-G	0.0147	5E-10		0.1535	NR unit increase	NR [NR] (imputed)	N
1260	chr1	88476733	88476734	rs10922977	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p22.2		rs10922977-T	0.635	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1260	chr1	88570376	88570377	rs17130257	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	1p22.2	NR	rs17130257-?	NR	8E-6		0.407	[0.23-0.59] unit decrease	Affymetrix [1590162] (imputed)	N
1261	chr1	88607615	88607616	rs4411112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.2		rs4411112-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1261	chr1	88625635	88625636	rs12032672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p22.2		rs12032672-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1261	chr1	88625635	88625636	rs12032672	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	1p22.2	PKN2	rs12032672-C	0.332	1E-6	(Red)	1.99	[1.50-2.62]	Affymetrix [~ 2500000] (imputed)	N
1261	chr1	88641062	88641063	rs6428637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p22.2		rs6428637-G	NR	1E-9		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1261	chr1	88641062	88641063	rs6428637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p22.2		rs6428637-G	0.422003	2E-11		0.015177699	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr1	88641062	88641063	rs6428637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p22.2		rs6428637-G	0.42199	2E-13		0.01654104	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr1	88641062	88641063	rs6428637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs6428637-G	0.461893	6E-12				Affymetrix, Illumina [24653286] (imputed)	N
1261	chr1	88641062	88641063	rs6428637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p22.2	NR	rs6428637-G	0.42152	2E-12		0.01311	[0.0095-0.0168] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1261	chr1	88651770	88651771	rs10923038	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	1p22.2	PKN2	rs10923038-C	0.3821	1E-10		0.2008	[0.14-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1261	chr1	88651770	88651771	rs10923038	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	1p22.2	PKN2	rs10923038-C	0.34	4E-7				Affymetrix [2500000] (imputed)	N
1261	chr1	88673595	88673596	rs10923043	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	1p22.2	Intergenic	rs10923043-T	0.548	4E-6		0.069	[0.04-0.098] unit increase	Affymetrix [7287191] (imputed)	N
1261	chr1	88717898	88717899	rs490379	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	1p22.2	PKN2	rs490379-?	NR	4E-6		0.75	[0.44-1.06] unit increase	Affymetrix [629686]	N
1261	chr1	88729682	88729683	rs74823926	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	1p22.2	Intergenic	rs74823926-C	0.97	9E-6				Illumina [NR] (imputed)	N
1261	chr1	88729682	88729683	rs74823926	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	1p22.2	Intergenic	rs74823926-C	0.97	3E-6	(AA)			Illumina [NR] (imputed)	N
1262	chr1	88782376	88782377	rs504458	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1p22.2	NR	rs504458-?	NR	2E-6		0.0491	[0.029-0.069] unit increase	Illumina [at least 560000] (imputed)	N
1262	chr1	88790959	88790960	rs127384	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p22.2	PKN2	rs127384-T	0.31	2E-10		0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1262	chr1	88802011	88802012	rs2179965	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	1p22.2	intergenic	rs2179965-?	NR	1E-6	(F3)			Affymetrix [70897]	N
1262	chr1	88829968	88829969	rs1156981	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p22.2	AS1, PKN2	rs1156981-A	0.0985136	2E-9		0.0207219	[0.014-0.027] unit increase	NR [16516521] (imputed)	N
1262	chr1	88845493	88845494	rs693691	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1p22.2	PKN2-AS1	rs693691-T	0.137	1E-8		0.077	[0.051-0.103] unit increase	NR [9744772] (imputed)	N
1262	chr1	88866144	88866145	rs6698723	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p22.2	NR	rs6698723-?	NR	1E-6	(AA)	4.82	[3.96-5.68]	Illumina [905956]	N
1263	chr1	88867184	88867185	rs12568997	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Autism spectrum disorder vs obsessive compulsive disorder (ordinary least squares (OLS))	18,381 autism spectrum disorder cases, 2,688 OCD cases	NA	1p22.2		rs12568997-?	NR	3E-8		0.018	NR unit increase	NR [6144458] (imputed)	N
1263	chr1	88872095	88872096	rs1846413	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p22.2	NR	rs1846413-?	NR	2E-6	(AA)	5.18	[4.14-6.22]	Illumina [905956]	N
1263	chr1	88892962	88892963	rs1960306	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1p22.2	NR	rs1960306-?	NR	3E-6	(AA)	5.15	[4.11-6.19]	Illumina [905956]	N
1263	chr1	88964852	88964853	rs181100621	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	1p22.2		rs181100621-A	0.01084	1E-5		2.208	[1.555-3.136]	Affymetrix [7975321] (imputed)	N
1263	chr1	88972878	88972879	rs306336	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	1p22.2	RP11-76N22.3, PKN2	rs306336-C	0.023	2E-6		1.65	[1.30-2.09]	Illumina [111240]	N
1263	chr1	88985631	88985632	rs1498911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p22.2	PKN2-AS1	rs1498911-A	0.5856	1E-6		0.0334	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1264	chr1	89010499	89010500	rs306320	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p22.2	intergenic	rs306320-G	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1264	chr1	89010499	89010500	rs306320	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p22.2	intergenic	rs306320-G	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1264	chr1	89045337	89045338	rs658980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p22.2	Intergenic	rs658980-A	0.4053	4E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1264	chr1	89066581	89066582	rs61767086	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p22.2	intergenic	rs61767086-G	0.144	2E-9	(EA, initial)	0.413	[0.28-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1264	chr1	89066581	89066582	rs61767086	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p22.2	intergenic	rs61767086-G	0.144	2E-7		0.216	[0.13-0.3] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1264	chr1	89109961	89109961	rs35254123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.2	RP11-76N22.2	rs35254123-CT	NR	1E-12		0.0213846	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1264	chr1	89117374	89117375	rs656908	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p22.2	intergenic	rs656908-T	NR	9E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1264	chr1	89118960	89118961	rs12140288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.2	RP11-76N22.2	rs12140288-A	NR	3E-8		0.0160168	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1264	chr1	89118960	89118961	rs12140288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p22.2	RP11-76N22.2	rs12140288-A	NR	2E-8		0.0176305	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1264	chr1	89123442	89123443	rs6699417	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p22.2	PKN2	rs6699417-T	0.61	5E-9		0.021	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1264	chr1	89126886	89126887	rs10493817	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p22.2	PKN2	rs10493817-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1265	chr1	89138686	89138692	rs57688553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p22.2	RP11-76N22.2	rs57688553-A	0.38084	5E-10		0.014249226	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1265	chr1	89139040	89139041	rs7551732	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p22.2	PKN2-AS1	rs7551732-?		5E-8		0.0217	[0.014-0.03] unit decrease	Illumina [31500000] (imputed)	N
1265	chr1	89139040	89139041	rs7551732	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p22.2	PKN2	rs7551732-A	0.608	6E-20		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1265	chr1	89142463	89142464	rs10922476	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10922476-A	0.444273	4E-17		0.0745454	[0.057-0.092] increase	Affymetrix [11014269] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p22.2		rs10922478-G	NR	1E-57		0.0204	[0.018-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p22.2		rs10922478-G	NR	1E-34		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p22.2		rs10922478-G	NR	2E-25		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p22.2		rs10922478-G	NR	2E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.2	RP11-76N22.2	rs10922478-A	NR	2E-14		0.0219498	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.2	NR	rs10922478-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1265	chr1	89144052	89144053	rs10922478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.2		rs10922478-?	NR	2E-60				NR [~ 8900000] (imputed)	N
1265	chr1	89146233	89146234	rs12145922	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	1p22.2	CCBL2, PKN2	rs12145922-A	0.61	4E-11		2.8	[2.20-3.40] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1265	chr1	89146660	89146660	rs35798904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p22.2		rs35798904-CT	NR	4E-15		0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1265	chr1	89146660	89146660	rs35798904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p22.2		rs35798904-CT	NR	2E-9		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1265	chr1	89146851	89146852	rs1002436	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p22.2	PKN2	rs1002436-A	0.434721	1E-52		0.0077642	[0.0068-0.0088] unit decrease	Affymetrix [13995440] (imputed)	N
1265	chr1	89146851	89146852	rs1002436	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p22.2	LMO4, PKN2	rs1002436-G	0.56	1E-20		9.33	z-score increase	Affymetrix [4314223] (imputed)	N
1265	chr1	89146851	89146852	rs1002436	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p22.2	LMO4, PKN2	rs1002436-G	0.56	6E-11		6.55	z-score increase	Affymetrix [4312306] (imputed)	N
1265	chr1	89146851	89146852	rs1002436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p22.2	NR	rs1002436-G	0.567995	4E-22		0.017979	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1265	chr1	89151597	89151598	rs950037	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p22.2	LOC101927891, PKN2	rs950037-T	0.6091	2E-6		0.0274	[0.016-0.039] unit decrease	NR [8041861] (imputed)	N
1265	chr1	89153854	89153855	rs35492837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs35492837-G	0.421751	4E-10				Affymetrix, Illumina [20825802] (imputed)	N
1265	chr1	89157442	89157443	rs71666203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p22.2	NR	rs71666203-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1265	chr1	89171220	89171221	rs56969212	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p22.2		rs56969212-?	NR	2E-13		0.0155128	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1265	chr1	89171220	89171221	rs56969212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p22.2	PKN2	rs56969212-CA	0.38027	1E-6	(women)	0.0224727	[0.013-0.032] unit increase	NR [17166351] (imputed)	N
1265	chr1	89171220	89171221	rs56969212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p22.2	PKN2	rs56969212-CA	0.380173	1E-11		0.0224347	[0.016-0.029] unit increase	NR [17166351] (imputed)	N
1265	chr1	89171731	89171731	rs71584924	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p22.2	PKN2	rs71584924-T	0.4555	1E-17		0.0161	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1265	chr1	89174252	89174253	rs10801682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p22.2		rs10801682-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1265	chr1	89180844	89180845	rs167365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p22.2		rs167365-G	NR	2E-18		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1265	chr1	89180844	89180845	rs167365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs167365-G	0.620736	1E-24				Affymetrix, Illumina [24332387] (imputed)	N
1265	chr1	89180844	89180845	rs167365	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p22.2	PKN2	rs167365-C	0.385237	1E-23		0.0188777	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1265	chr1	89180844	89180845	rs167365	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p22.2		rs167365-?	NR	2E-16		0.0177402	[0.014-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1265	chr1	89189094	89189094	rs35424856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p22.2		rs35424856-GC	0.468157	1E-25		0.0217003	[0.018-0.026] unit increase	Illumina [13479295] (imputed)	N
1265	chr1	89189094	89189094	rs35424856	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p22.2	PKN2	rs35424856-?	NR	5E-29		0.032894857	[0.027-0.039] unit increase	Illumina [27896057] (imputed)	N
1265	chr1	89198984	89198985	rs305221	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	1p22.2	CCBL2, GTF2B, LOC101927891, PKN2	rs305221-?	NR	3E-12				Affymetrix [up to 7325140] (imputed)	N
1265	chr1	89210858	89210859	rs305219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p22.2		rs305219-T	NR	5E-13		0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1265	chr1	89222195	89222196	rs77582594	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	1p22.2	PKN2	rs77582594-T	0.05	8E-7		1.47	NR unit increase	Illumina [NR] (imputed)	N
1265	chr1	89225975	89225976	rs430600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p22.2		rs430600-C	NR	1E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1265	chr1	89231762	89231763	rs12021820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p22.2	NR	rs12021820-A	0.544229	2E-11		0.012899	[0.0091-0.0167] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1265	chr1	89232336	89232337	rs634683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs634683-T	0.620921	1E-18				Affymetrix, Illumina [24558453] (imputed)	N
1265	chr1	89242371	89242372	rs805047	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p22.2	PKN2	rs805047-A	0.381407	5E-16		0.00326396	[0.0025-0.004] unit decrease	Affymetrix [13995440] (imputed)	N
1265	chr1	89255038	89255039	rs6671230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p22.2		rs6671230-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1266	chr1	89269339	89269340	rs9428015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p22.2		rs9428015-A	NR	3E-12		0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1266	chr1	89271573	89271574	rs786906	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p22.2	PKN2	rs786906-T	0.4552	5E-9		0.079	[0.052-0.106] unit increase	Affymetrix [~ 11900000] (imputed)	N
1266	chr1	89271573	89271574	rs786906	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p22.2	NR	rs786906-T	0.4181	1E-6		0.213	mmHg increase	Illumina [242296]	N
1266	chr1	89281528	89281529	rs786919	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p22.2	PKN2	rs786919-A		1E-11		0.262	unit increase	Affymetrix [at least 2696785] (imputed)	N
1266	chr1	89281528	89281529	rs786919	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p22.2	PKN2	rs786919-A		2E-9		0.156	unit increase	Affymetrix [at least 2696785] (imputed)	N
1266	chr1	89281528	89281529	rs786919	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p22.2	PKN2	rs786919-A		4E-6		0.109	unit increase	Affymetrix [at least 2696785] (imputed)	N
1266	chr1	89284107	89284108	rs1085563	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.2	NR	rs1085563-G	0.3855	1E-8				NR [9056863] (imputed)	N
1266	chr1	89286672	89286673	rs786921	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1p22.2	PKN2	rs786921-A	0.6019	4E-7		0.0339	[0.021-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1266	chr1	89286672	89286673	rs786921	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	1p22.2	PKN2	rs786921-A	NR	3E-8		0.0365	[0.024-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1266	chr1	89286672	89286673	rs786921	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	1p22.2	PKN2	rs786921-A	0.6019	3E-7		0.0333	[0.021-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1266	chr1	89286672	89286673	rs786921	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	1p22.2	PKN2	rs786921-A	0.6019	4E-6		0.0306	[0.018-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1266	chr1	89293294	89293294	rs569279311	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1p22.2	PKN2	rs569279311-?	NR	9E-21		0.0026	[0.002-0.0032] unit decrease	Affymetrix [21347608] (imputed)	N
1266	chr1	89293294	89293294	rs569279311	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1p22.2	PKN2	rs569279311-?	NR	4E-14		0.0034	[0.0026-0.0042] unit decrease	Affymetrix [21347608] (imputed)	N
1266	chr1	89293294	89293294	rs569279311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p22.2	PKN2	rs569279311-CCCCTTCCCTT	NR	3E-10		0.0195191	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1266	chr1	89295329	89295330	rs786913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p22.2	PKN2	rs786913-G	0.616867	1E-15		0.018106245	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr1	89295329	89295330	rs786913	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p22.2	NR	rs786913-G	0.620292	2E-10		0.011961	[0.0083-0.0157] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1266	chr1	89295329	89295330	rs786913	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p22.2	NR	rs786913-G	0.620336	4E-16		0.015376	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1266	chr1	89295764	89295765	rs786914	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p22.2	PKN2	rs786914-C	0.38	6E-9		0.0051	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1266	chr1	89295764	89295765	rs786914	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p22.2	PKN2	rs786914-C	0.38	2E-7		0.0046	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1266	chr1	89295764	89295765	rs786914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p22.2		rs786914-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1266	chr1	89309601	89309602	rs10922493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p22.2		rs10922493-C	NR	7E-22		0.0187	[0.015-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1266	chr1	89310531	89310532	rs191805855	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1p22.2	PKN2, GTF2B	rs191805855-G	NR	2E-6		0.655174	[0.39-0.92] unit increase	Illumina [at least 950000] (imputed)	N
1266	chr1	89332098	89332099	rs12035750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p22.2		rs12035750-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1266	chr1	89332098	89332099	rs12035750	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p22.2	GTF2B	rs12035750-C	0.6445	3E-9		0.2125	[0.14-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1266	chr1	89341407	89341408	rs17130643	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p22.2	GTF2B	rs17130643-A	0.0060	4E-6	(sICAM-1 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
1266	chr1	89344255	89344256	rs10127863	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p22.2	GTF2B	rs10127863-G	0.4553	9E-10		0.0826	[0.055-0.11] unit increase	Affymetrix [~ 11900000] (imputed)	N
1266	chr1	89344648	89344649	rs7554456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p22.2	GTF2B	rs7554456-T	0.383065	9E-16		0.018389508	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1266	chr1	89347311	89347312	rs61766109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p22.2	NR	rs61766109-T	NR	3E-11		0.0277	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1266	chr1	89352611	89352612	rs12740480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p22.2		rs12740480-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1266	chr1	89360157	89360158	rs10922502	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	1p22.2	GTF2B	rs10922502-A	0.62	2E-15		0.382	[0.28-0.48] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1266	chr1	89363263	89363264	rs6679817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p22.2		rs6679817-T	NR	3E-9		0.0298	[0.02-0.04] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1266	chr1	89363263	89363264	rs6679817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p22.2		rs6679817-T	0.363739	2E-11		0.015529031	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1266	chr1	89363263	89363264	rs6679817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p22.2		rs6679817-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1266	chr1	89363263	89363264	rs6679817	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p22.2	GTF2B	rs6679817-T	0.3421	9E-9		0.1533	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1266	chr1	89373370	89373371	rs10801690	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p22.2	KYAT3	rs10801690-C	0.49	6E-13	(imidazole lactate)	0.195	[0.14-0.25] unit increase	Illumina [7750367] (imputed)	N
1266	chr1	89381948	89381949	rs34974281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p22.2		rs34974281-A	NR	4E-10		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1266	chr1	89382663	89382664	rs9787133	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p22.2	CCBL2	rs9787133-G	0.494	3E-12	(Kynurenine--oxoglutarate transaminase 3, CCBL2.12682.5.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
1266	chr1	89383342	89383343	rs115920413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p22.2	NR	rs115920413-T	0.015118	4E-11		0.052865	[0.037-0.069] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1267	chr1	89412371	89412372	rs12144640	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p22.2	NR	rs12144640-A	0.491	3E-12	(Kynurenine--oxoglutarate transaminase 3, CCBL2.12682.5.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
1267	chr1	89442731	89442732	rs10922531	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p22.2	CCBL2	rs10922531-T	0.504771	2E-69	(imidazole lactate)	0.391	[0.35-0.43] unit decrease	Illumina [13039987] (imputed)	N
1267	chr1	89442732	89442733	rs10922532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p22.2	CCBL2	rs10922532-T	NR	2E-11		0.0198655	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr1	89442732	89442733	rs10922532	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p22.2	KYAT3	rs10922532-T	0.3876	2E-8		0.0048	[0.003-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1267	chr1	89474817	89474818	rs17433780	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	1p22.2	GBP3	rs17433780-?	NR	2E-6	(Multiple-adjusted)			Illumina [32817]	N
1267	chr1	89481965	89481966	rs144945296	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GBP3	rs144945296-?	NR	6E-9		2.01015	[NR] unit increase	Affymetrix [NR] (imputed)	N
1267	chr1	89506092	89506093	rs61798917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.2		rs61798917-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1267	chr1	89517809	89517810	rs6675866	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Executive function (trail making test B)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	1p22.2		rs6675866-T	0.20	2E-6		24.6	[14.47-34.73] unit decrease	NR [534934]	N
1268	chr1	89534337	89534338	rs55679149	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	1p22.2	GBP1	rs55679149-T	NR	8E-7				NR [NR] (imputed)	N
1268	chr1	89551289	89551290	rs12062395	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p22.2	GBP1, GBP2	rs12062395-C	0.982934	6E-11	(imidazole lactate)	0.578	[0.41-0.75] unit decrease	Illumina [13039987] (imputed)	N
1268	chr1	89592132	89592133	rs17130736	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p22.2	NR	rs17130736-?		7E-6				Illumina [4322238] (imputed)	N
1268	chr1	89647423	89647424	rs41288385	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GBP4	rs41288385-?	NR	2E-8	(female)	3.22696	[NR] unit increase	Affymetrix [NR] (imputed)	N
1268	chr1	89648306	89648307	rs571510254	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - saw palmetto product (UKB data field 20003_1205)	512 European ancestry cases, 208,256 European ancestry controls	NA	1p22.2		rs571510254-A	0.001104	2E-9		8.97	[6.03-11.91] unit increase	NR [11842647] (imputed)	N
1269	chr1	89709462	89709463	rs544038	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Olsenella C abundance in stool	5,959 Finnish ancestry individuals	NA	1p22.2		rs544038-C	0.0144611	1E-9		0.20173	[0.14-0.27] unit increase	Illumina [7980478] (imputed)	N
1269	chr1	89733703	89733704	rs77231230	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GBP5	rs77231230-?	NR	7E-10	(female)	3.15552	[NR] unit increase	Affymetrix [NR] (imputed)	N
1269	chr1	89777140	89777141	rs114182264	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p22.2	NR	rs114182264-?	NR	2E-9		5225.0806	NR unit decrease	Illumina [2379855]	N
1270	chr1	89814795	89814796	rs12046604	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	1p22.2	NR	rs12046604-T	NR	1E-5		0.7007	NR	Illumina [at least 560000] (imputed)	N
1270	chr1	89844751	89844752	rs10801727	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	1p22.2	NR	rs10801727-?	NR	9E-6		0.00394	[0.0022-0.0057] unit decrease	Affymetrix [9658292] (imputed)	N
1270	chr1	89897114	89897115	rs12095604	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	1p22.2	NR	rs12095604-C	0.1	5E-6		2.1	[1.53-2.88]	Illumina [17125421] (imputed)	N
1271	chr1	89947313	89947314	rs9428041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p22.2		rs9428041-A	NR	1E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1271	chr1	89948843	89948844	rs9427984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p22.2	NR	rs9427984-G	NR	3E-9		0.0193	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1271	chr1	89952556	89952557	rs1563786	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p22.2	Intergenic	rs1563786-G	0.4714	8E-9		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1271	chr1	89972061	89972062	rs1585364	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p22.2	NR	rs1585364-?	NR	2E-9				Affymetrix [NR]	N
1271	chr1	89977882	89977883	rs12402227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p22.2	Intergenic	rs12402227-A	0.7703	2E-9	(MTAG)	0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr1	89983183	89983184	rs359935	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	1p22.2	intergenic	rs359935-A	0.053	2E-8	(women)	0.353	[0.23-0.47] mg/dL increase	Illumina [622468]	N
1271	chr1	90022795	90022796	rs922107	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	1p22.2	LRRC8B	rs922107-G	0.211	3E-6	(Recessive model)	1.788	[1.25-2.558]	Illumina [733202]	N
1271	chr1	90025518	90025519	rs922106	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	1p22.2	LRRC8B	rs922106-T	0.202	9E-7	(Recessive model)	1.679	[1.277-2.207]	Illumina [733202]	N
1271	chr1	90030866	90030867	rs184429855	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1p22.2		rs184429855-G	0.0012072	4E-6		0.45482	[0.26-0.65] unit increase	Affymetrix [15580782] (imputed)	N
1271	chr1	90035178	90035179	rs12740865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs12740865-T	0.450365	3E-19				Affymetrix, Illumina [23467995] (imputed)	N
1271	chr1	90038587	90038588	rs12118443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.2	LRRC8B	rs12118443-A	0.488813	4E-16		0.01790608	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1271	chr1	90038587	90038588	rs12118443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p22.2	NR	rs12118443-A	0.489432	4E-22		0.018028	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1272	chr1	90047899	90047900	rs79133495	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	1p22.2	LRRC8B	rs79133495-?	0.052	3E-6		28.2	[16.58-39.82] unit increase	Illumina [7663546] (imputed)	N
1272	chr1	90051224	90051225	rs1031684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p22.2	RP5-1007M22.2, LRRC8B	rs1031684-A	0.486898	2E-12		0.015608387	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1272	chr1	90052625	90052626	rs2390762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p22.2		rs2390762-G	NR	8E-17		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1272	chr1	90065491	90065491	rs544622120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p22.2	RP5-1007M22.2	rs544622120-GT	0.16566	3E-14		0.024055533	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1272	chr1	90066414	90066415	rs6428558	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.2	LRRC8C	rs6428558-?	NR	6E-6	(DAG 34:1)	0.22188321	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1272	chr1	90112430	90112431	rs10754283	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1p22.2	LRRC8C	rs10754283-?		5E-6				Illumina [859311]	N
1272	chr1	90128388	90128389	rs113563325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p22.2		rs113563325-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1272	chr1	90151385	90151387	rs368863397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p22.2		rs368863397-C	NR	3E-9		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1272	chr1	90167922	90167923	rs17130858	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.2	LRRC8B	rs17130858-?	NR	7E-6	(pyruvate)	0.30813143	[0.17-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1272	chr1	90174761	90174762	rs1320562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs1320562-C	0.739975	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1273	chr1	90179531	90179532	rs12032393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.2		rs12032393-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1273	chr1	90192033	90192034	rs12042197	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p22.2	LRRC8C	rs12042197-G	0.762199	4E-9		0.0127126	[0.0085-0.0169] unit increase	NR [13737936] (imputed)	N
1273	chr1	90200199	90200200	rs7521555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p22.2		rs7521555-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1273	chr1	90223399	90223400	rs519989	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p22.2	Intergenic	rs519989-A	0.3349	9E-9	(MTAG)	0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1273	chr1	90228518	90228519	rs2065152	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1p22.2	RP11-302M6.4	rs2065152-C	0.6426000000000001	9E-10		0.1103	[0.075-0.146] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1273	chr1	90229394	90229395	rs496954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p22.2	LRRC8C	rs496954-A	0.4287	2E-17		0.019227693	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr1	90229394	90229395	rs496954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p22.2	NR	rs496954-T	0.571499	5E-23		0.019046	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1273	chr1	90239522	90239523	rs534247	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.2	NR	rs534247-A	0.01045	6E-9	(C4B)	0.5948	NR unit increase	Illumina [1671387] (imputed)	N
1273	chr1	90244008	90244009	rs3114670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs3114670-G	0.571448	2E-21				Affymetrix, Illumina [17210439] (imputed)	N
1273	chr1	90305344	90305345	rs12035735	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced digestive symptoms in inflammatory bowel disease	93 Japanese ancestry cases, 1,127 Japanese ancestry controls	NA	1p22.2	LRRC8D, LRRC8C, ZNF326	rs12035735-?	NR	7E-7		5.0	[2.7-9.6]	Affymetrix [> 5000000] (imputed)	N
1274	chr1	90309078	90309079	rs150448650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p22.2	LRRC8D	rs150448650-A	0.007579	6E-12		0.095790476	[0.068-0.123] unit decrease	Affymetrix [93095623] (imputed)	N
1274	chr1	90337024	90337025	rs12081674	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1p22.2	LRRC8D	rs12081674-G	0.184061141	4E-6		1.0733533	[1.041492597-1.106188635]	Illumina [10439017] (imputed)	N
1274	chr1	90343950	90343951	rs12091709	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	1p22.2	LRRC8D	rs12091709-?	NR	3E-6		0.1154	[0.067-0.164] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1274	chr1	90356836	90356837	rs72716342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p22.2	LRRC8D, RP11-302M6.4	rs72716342-G	0.13893	4E-13		0.02358059	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1274	chr1	90372769	90372770	rs78359677	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1p22.2	LRRC8D	rs78359677-G	0.229878216	1E-6		1.1185868	[1.068718633-1.170781804]	Illumina [10439017] (imputed)	N
1275	chr1	90440966	90440967	rs75494728	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	1p22.2	LRRC8D, ZNF326	rs75494728-G	NR	8E-6		0.9241	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1275	chr1	90539763	90539764	rs2813746	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NA	1p22.2	ZNF326	rs2813746-C	0.46	2E-6		148.1	[NR] unit increase	Illumina [546314]	N
1275	chr1	90560092	90560093	rs7533590	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p22.2	NR	rs7533590-?	NR	7E-34				Affymetrix [NR]	N
1276	chr1	90575458	90575459	rs146460178	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	1p22.2		rs146460178-C	NR	7E-6	(GLM)	5.2383	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1276	chr1	90575458	90575459	rs146460178	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	1p22.2		rs146460178-C	NR	9E-6	(GLM)	15.8127	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1276	chr1	90646871	90646872	rs6675307	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	1p22.2	NR	rs6675307-A	0.2393	4E-7		1.21	[1.12-1.30]	Affymetrix [at least 416462] (imputed)	N
1277	chr1	90735462	90735463	rs181003973	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p22.2	RNU6-695P	rs181003973-A	0.9774	8E-6		0.2273	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1277	chr1	90796052	90796053	rs4261101	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1p22.2	NR	rs4261101-G	NR	2E-8		1.0309278		NR [NR] (imputed)	N
1277	chr1	90796052	90796053	rs4261101	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1p22.2	intergenic	rs4261101-G	0.63	1E-8		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1277	chr1	90796111	90796112	rs4356032	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1p22.2	ZNF326, BARHL2	rs4356032-C	0.374977	3E-6		0.0291	[0.017-0.041] unit decrease	Illumina [1220000] (imputed)	N
1277	chr1	90811450	90811451	rs10922833	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.2	NR	rs10922833-C	0.04355	3E-9	(TNC)	0.03542	NR unit increase	Illumina [1671387] (imputed)	N
1277	chr1	90824562	90824563	rs10737713	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p22.2	NR	rs10737713-A	0.340954	5E-12		0.05154717	[0.037-0.066] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1277	chr1	90825187	90825188	rs6428587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs6428587-T	0.6323	9E-9		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1277	chr1	90825205	90825206	rs6428588	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	1p22.2	NR	rs6428588-C	0.6599999999999999	3E-6		1.1764705	[1.1-1.27]	NR [8807005] (imputed)	N
1278	chr1	90875887	90875888	rs2136093	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	1p22.2	intergenic	rs2136093-?	0.31	4E-7	(whole sample)	8.3	[NR] unit decrease	Illumina [539391]	N
1278	chr1	90942807	90942808	rs699534	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	1p22.2	BARHL2	rs699534-A	0.427026	2E-10		0.00472408	[0.0033-0.0062] unit increase	NR [NR] (imputed)	N
1278	chr1	90942807	90942808	rs699534	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	1p22.2	BARHL2	rs699534-A	0.427026	2E-6		0.00468847	[0.0028-0.0066] unit increase	NR [NR] (imputed)	N
1278	chr1	90943906	90943907	rs2390582	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	1p22.2	intergenic	rs2390582-?	NR	1E-6				Affymetrix [70897]	N
1279	chr1	90973860	90973861	rs527402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p22.2	RP5-827O9.1	rs527402-A	NR	6E-9		0.0179742	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1279	chr1	91078045	91078046	rs74802342	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p22.2		rs74802342-A	0.1125	2E-8		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1279	chr1	91088883	91088884	rs4370753	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p22.2		rs4370753-T	0.38	2E-15		7.92	z score increase	Affymetrix [9061022] (imputed)	N
1279	chr1	91088883	91088884	rs4370753	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p22.2	NR	rs4370753-T	0.3863	1E-14				NR [9056863] (imputed)	N
1279	chr1	91088883	91088884	rs4370753	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p22.2		rs4370753-?	NR	6E-10				NR [9705931] (imputed)	N
1279	chr1	91088883	91088884	rs4370753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p22.2	Intergenic	rs4370753-T	0.3748	6E-13	(MTAG)	0.0123	[0.009-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1279	chr1	91088883	91088884	rs4370753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p22.2	Intergenic	rs4370753-T	0.3748	9E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1279	chr1	91090124	91090125	rs9287148	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p22.2		rs9287148-A	0.36	7E-20		9.13	z score increase	Affymetrix [9061022] (imputed)	N
1279	chr1	91090124	91090125	rs9287148	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.2		rs9287148-A	0.36	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1279	chr1	91090124	91090125	rs9287148	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.2	NR	rs9287148-A	0.3661	8E-10				NR [9056863] (imputed)	N
1279	chr1	91093013	91093014	rs6684189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p22.2		rs6684189-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1280	chr1	91096798	91096799	rs4480339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs4480339-A	0.6926	2E-10		0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91097494	91097495	rs12022666	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs12022666-A	0.3076	3E-10	(conditional-joint)	0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91126096	91126097	rs17131123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs17131123-A	0.9659	6E-10		0.0243	[0.017-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91135627	91135628	rs17131127	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Emotional lability	3,268 European ancestry individuals	NA	1p22.2	NR	rs17131127-C	0.8667	1E-6		0.175	[0.1-0.25] unit decrease	Illumina [8348463] (imputed)	N
1280	chr1	91135863	91135864	rs3945119	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p22.2	U3	rs3945119-A	NR	2E-8		0.016583018	[0.011-0.022] unit decrease	Affymetrix [NR]	N
1280	chr1	91142985	91142986	rs1115569	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p22.2	BARHL2	rs1115569-T	0.555	2E-11		0.0079	[0.0055-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1280	chr1	91145180	91145181	rs56174996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs56174996-A	0.1359	3E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91154319	91154320	rs55817211	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1p22.2	BARHL2	rs55817211-T	0.3007	4E-9		0.0124273645	[0.0083-0.0166] unit decrease	Illumina [9339358] (imputed)	N
1280	chr1	91176183	91176184	rs12759477	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	1p22.2	ZNF644, BARHL2	rs12759477-G	0.70108	2E-13		0.00737083	[0.0054-0.0093] unit increase	NR [NR] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p22.2		rs1008078-T	0.3731	6E-11		53.83937	z score increase	NR [6814003]	N
1280	chr1	91189730	91189731	rs1008078	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p22.2	BARHL2	rs1008078-?	NR	3E-13		0.015171385	[0.011-0.019] unit decrease	NR [7306098]	N
1280	chr1	91189730	91189731	rs1008078	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p22.2	NR	rs1008078-T	0.402	2E-27		0.0120276	[0.0099-0.0142] unit increase	NR [9732723] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p22.2	NR	rs1008078-T	0.402	2E-18		0.022816928	[0.018-0.028] unit increase	NR [~ 10000000] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs1008078-T	0.4019	5E-37		0.0182	[0.015-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p22.2	Intergenic	rs1008078-T	0.4019	6E-41	(MTAG)	0.0179	[0.015-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p22.2	NR	rs1008078-T	0.4029	3E-14		0.017238006	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1280	chr1	91189730	91189731	rs1008078	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	1p22.2	NR	rs1008078-?	0.59	5E-9		1.0357074	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p22.2		rs12089815-G	0.453	2E-29		0.014	[0.012-0.016] unit increase	NR [NR] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p22.2	BARHL2	rs12089815-A	0.4498	2E-15		0.01609118	[0.012-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p22.2	NR	rs12089815-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p22.2		rs12089815-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p22.2		rs12089815-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1280	chr1	91189932	91189933	rs12089815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.2		rs12089815-A	0.5418	3E-33	(conditional-joint)	0.0169	[0.014-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91190853	91190854	rs114328297	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1p22.2	NA	rs114328297-T		2E-12		0.0166928	[0.012-0.021] unit increase	Illumina [13288253] (imputed)	N
1280	chr1	91190855	91190856	rs115552537	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	1p22.2	BARHL2	rs115552537-A	0.22234900000000002	1E-8		0.0264951	[0.017-0.036] unit increase	Affymetrix [641018] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p22.2		rs72720396-A	0.7706	3E-18		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p22.2	BARHL2, ZNF644	rs72720396-G	0.2259	4E-21		1.0416667		Affymetrix [11880941] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p22.2	BARHL2, ZNF644	rs72720396-G	0.2259	4E-21		1.0424774		Affymetrix [11880941] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1p22.2	BARHL2	rs72720396-G	0.231	7E-10		0.0167	[0.011-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1p22.2	BARHL2	rs72720396-G	0.16	1E-8		0.015	[0.0091-0.0209] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p22.2		rs72720396-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1p22.2	CALB1	rs72720396-G	0.23	3E-8		1.0526316	[1.03-1.07]	NR [16760980] (imputed)	N
1280	chr1	91191581	91191582	rs72720396	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1p22.2	CALB1	rs72720396-A	0.77	2E-8		0.025	[0.015-0.035] unit decrease	NR [16760980] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p22.2		rs10922907-T	NR	2E-8		0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p22.2	BARHL2	rs10922907-A	0.450844	2E-24		0.021072	[0.017-0.025] unit decrease	NR [16516521] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p22.2	BARHL2, ZNF644	rs10922907-A		7E-11		1.023	[NR]	Affymetrix [up to 79000000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p22.2		rs10922907-A	0.451	3E-13		0.015	[0.011-0.019] unit increase	Affymetrix [up to 90000000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1p22.2	BARHL2	rs10922907-A	0.4497	3E-9		0.015331152	[0.01-0.02] unit increase	Affymetrix [~ 11515000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1p22.2	NR	rs10922907-T	0.538	2E-9		0.00936816	[0.0063-0.0124] unit decrease	NR [9732723] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p22.2	Intergenic	rs10922907-A	0.4573	2E-11	(MTAG)	0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p22.2	Intergenic	rs10922907-A	0.4577	2E-28	(MTAG)	0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p22.2	Intergenic	rs10922907-A	0.4513	3E-16	(MTAG)	0.0188	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1280	chr1	91193048	91193049	rs10922907	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p22.2	BARHL2	rs10922907-A	NR	2E-12		0.021674117	[0.016-0.028] unit decrease	Affymetrix [NR]	N
1280	chr1	91193690	91193691	rs12568187	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p22.2	NR	rs12568187-T		1E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
1280	chr1	91193690	91193691	rs12568187	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p22.2	BARHL2	rs12568187-?		1E-30				Affymetrix, Illumina [NR] (imputed)	N
1280	chr1	91196098	91196099	rs7517629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p22.2	Intergenic	rs7517629-A	0.4698	4E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1280	chr1	91196175	91196176	rs12042107	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p22.2	BARHL2	rs12042107-T	0.4511	5E-11		0.01429985	[0.01-0.019] unit increase	Affymetrix [11514654] (imputed)	N
1280	chr1	91196175	91196176	rs12042107	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p22.2	BARHL2	rs12042107-T	0.4499	9E-12		0.016201833	[0.012-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1280	chr1	91196175	91196176	rs12042107	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	1p22.2	Intergenic	rs12042107-?	NR	7E-9		0.0247903	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1280	chr1	91197208	91197209	rs77101500	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	1p22.2	NR	rs77101500-G	0.975	7E-9		1.6655	[1.1-2.23] unit increase	Affymetrix, Illumina [12989965] (imputed)	N
1280	chr1	91200190	91200191	rs4146669	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p22.2	NR	rs4146669-?	NR	6E-6		0.0921679	[0.052-0.132] unit decrease	NR [13958389] (imputed)	N
1280	chr1	91200190	91200191	rs4146669	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p22.2	BARHL2	rs4146669-C	0.4708	3E-12		0.014080922	[0.01-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1280	chr1	91206577	91206578	rs10801826	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	1p22.2	BARHL2, ZNF644	rs10801826-C		2E-8		0.951	[NR]	Affymetrix [~ 79000000] (imputed)	N
1280	chr1	91207756	91207757	rs7548936	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p22.2	BARHL2	rs7548936-G	0.626845	2E-9		0.00848296	[0.0057-0.0113] unit decrease	Affymetrix [12370749]	N
1280	chr1	91207756	91207757	rs7548936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p22.2		rs7548936-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1280	chr1	91212215	91212216	rs6699397	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	1p22.2	BARHL2	rs6699397-G	NR	2E-9		0.012195	[0.0082-0.0162] unit decrease	Affymetrix [18485882] (imputed)	N
1280	chr1	91212215	91212216	rs6699397	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1p22.2	NR	rs6699397-G	0.383	3E-17		0.0126997	[0.0098-0.0156] unit decrease	NR [9732723] (imputed)	N
1280	chr1	91212215	91212216	rs6699397	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p22.2	NA	rs6699397-A	0.6236	1E-11		0.0118	[0.0085-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
1280	chr1	91212215	91212216	rs6699397	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p22.2	NR	rs6699397-A	0.6236	1E-11		0.0118	[0.0085-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
1280	chr1	91214713	91214714	rs12133063	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p22.2	NR	rs12133063-C	0.371769	2E-13		0.053425286	[0.039-0.068] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1280	chr1	91220614	91220615	rs12122664	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p22.2	RP4-665J23.1	rs12122664-C	0.311	3E-10		0.013750689	[0.0095-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1281	chr1	91231084	91231085	rs6428601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p22.2		rs6428601-C	NR	7E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1281	chr1	91231084	91231085	rs6428601	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1p22.2	BARHL2	rs6428601-A	0.4549	4E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1281	chr1	91247344	91247345	rs6669072	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	1p22.2	BARHL2, ZNF644	rs6669072-?	NR	3E-8		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [8037763] (imputed)	N
1281	chr1	91252862	91252863	rs10922924	25383866	Kirkpatrick RM	2014-11-10	PLoS One	Results of a "GWAS plus:" general cognitive ability is substantially heritable and massively polygenic.	General cognitive ability	7,100 European ancestry individuals	NA	1p22.2	intergenic	rs10922924-?	NR	1E-6				Illumina [2546647] (imputed)	N
1281	chr1	91263756	91263757	rs4561025	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	1p22.2	NR	rs4561025-A	0.3521	3E-8		0.01059	[0.0068-0.0143] unit increase	NR [8968716] (imputed)	N
1281	chr1	91274645	91274646	rs116092581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs116092581-A	NR	2E-13		0.0702	[0.052-0.089] unit increase	Affymetrix [9000000] (imputed)	N
1281	chr1	91288129	91288130	rs3843306	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1p22.2	intergenic	rs3843306-?	NR	5E-6	(FEV1 decline in asthmatics)	0.1763	[0.10-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
1281	chr1	91317699	91317700	rs10436922	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	1p22.2	NR	rs10436922-?	NR	4E-8			[NR]	NR [1665663]	N
1281	chr1	91334933	91334934	rs77664233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs77664233-A	NR	4E-12		0.0378	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1281	chr1	91346791	91346792	rs946077	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1p22.2	NR	rs946077-C	NR	6E-7		0.1246	[0.076-0.174] SD units increase	NR [10700000] (imputed)	N
1282	chr1	91357581	91357581	rs199704516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p22.2		rs199704516-TG	NR	8E-9		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1282	chr1	91485158	91485159	rs165160	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs165160-C	0.124815	2E-12				Affymetrix, Illumina [23472807] (imputed)	N
1283	chr1	91500507	91500508	rs60633358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p22.2	NR	rs60633358-C	0.131836	7E-15		0.02173	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1283	chr1	91502559	91502560	rs12239520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs12239520-C	NR	4E-12		0.0245	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr1	91504336	91504337	rs187131	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1p22.2	NR	rs187131-G	NR	4E-7		0.1291	[0.079-0.179] SD units decrease	NR [10700000] (imputed)	N
1283	chr1	91527197	91527198	rs165280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs165280-G	NR	3E-34		0.0408	[0.034-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr1	91530000	91530001	rs469721	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p22.2	ZNF644	rs469721-C	0.803609	2E-11		0.00188638	[0.0013-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
1283	chr1	91530000	91530001	rs469721	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p22.2	NR	rs469721-C	0.80312	5E-12		0.010653	[0.0076-0.0137] unit increase	Affymetrix [16585854] (imputed)	N
1283	chr1	91530000	91530001	rs469721	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p22.2	NR	rs469721-C	0.80312	5E-13		0.0128048	[0.0093-0.0163] unit increase	Affymetrix [16585866] (imputed)	N
1283	chr1	91530304	91530305	rs469772	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1p22.2	ZNF644	rs469772-T	0.19	6E-12		0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1283	chr1	91530304	91530305	rs469772	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	1p22.2	ZNF644	rs469772-T	NR	2E-8				NR [2501549] (imputed)	N
1283	chr1	91530431	91530432	rs469882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p22.2		rs469882-C	NR	3E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1283	chr1	91530431	91530432	rs469882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p22.2	NR	rs469882-C	0.196427	1E-10		0.015687	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1283	chr1	91530431	91530432	rs469882	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p22.2	NR	rs469882-A	0.80332	4E-43		0.0353097	[0.03-0.04] unit increase	NR [NR]	N
1283	chr1	91530431	91530432	rs469882	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1p22.2	ZNF644	rs469882-A	0.8	3E-11	(BMI-adjusted)	0.032	[0.022-0.042] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1283	chr1	91531021	91531022	rs662026	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p22.2	ZNF644	rs662026-A	0.7998	3E-8		0.0212	[0.014-0.029] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1283	chr1	91533296	91533297	rs165316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p22.2		rs165316-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1283	chr1	91542516	91542517	rs469864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p22.2		rs469864-C	NR	4E-31		0.0307	[0.026-0.036] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1283	chr1	91542516	91542517	rs469864	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p22.2	NR	rs469864-T	0.790556	6E-17		0.00854315	[0.0065-0.0106] unit increase	Affymetrix [16582909] (imputed)	N
1283	chr1	91542516	91542517	rs469864	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p22.2	NR	rs469864-T	0.790556	4E-18		0.00955568	[0.0073-0.0118] unit increase	Affymetrix [16582965] (imputed)	N
1283	chr1	91542829	91542830	rs12124760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.2	HFM1	rs12124760-?	NR	8E-6	(PC 38:2)	0.4855661	[0.27-0.7] unit increase	Affymetrix [at least 2500000] (imputed)	N
1283	chr1	91544957	91544959	rs66963394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p22.2		rs66963394-A	NR	2E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1283	chr1	91545825	91545826	rs469802	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p22.2		rs469802-A	0.796989	3E-8		0.026933	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1283	chr1	91546447	91546448	rs75564621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs75564621-T	NR	4E-37		0.0557	[0.047-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr1	91546447	91546448	rs75564621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p22.2	NR	rs75564621-T	NR	4E-10		0.0274	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1283	chr1	91547264	91547265	rs458140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p22.2		rs458140-C	NR	1E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1283	chr1	91547663	91547664	rs112305409	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p22.2	NR	rs112305409-C	0.105	8E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1283	chr1	91550534	91550535	rs164910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs164910-C	NR	2E-41		0.0569	[0.049-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1283	chr1	91550534	91550535	rs164910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1p22.2	NR	rs164910-C	NR	2E-11		0.0284	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1283	chr1	91569688	91569689	rs164898	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	1p22.2	ZNF644	rs164898-?	0.27	6E-6	(WHR)			Illumina [308011]	N
1283	chr1	91582853	91582854	rs165289	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs165289-A	NR	5E-16		0.0266	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1283	chr1	91584915	91584916	rs191524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.2	intergenic	rs191524-A	0.34218	4E-9		0.013687208	[0.0091-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr1	91587560	91587561	rs79898419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p22.2		rs79898419-G	NR	4E-18		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1283	chr1	91587560	91587561	rs79898419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p22.2	NR	rs79898419-G	0.246281	1E-11		0.0173761	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr1	91587560	91587561	rs79898419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p22.2		rs79898419-G	0.246374	1E-24		0.02675775	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr1	91587560	91587561	rs79898419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p22.2		rs79898419-G	0.24636	5E-22		0.025162045	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr1	91587560	91587561	rs79898419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p22.2		rs79898419-G	0.246328	1E-10		0.016470175	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr1	91588062	91588063	rs79635379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p22.2		rs79635379-T	0.246866	1E-11		0.017387595	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr1	91588062	91588063	rs79635379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p22.2	NR	rs79635379-T	0.245882	2E-10		0.013663	[0.0095-0.0178] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1283	chr1	91588062	91588063	rs79635379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.2	NR	rs79635379-T	0.210987	2E-27				Affymetrix, Illumina [24588908] (imputed)	N
1283	chr1	91588062	91588063	rs79635379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p22.2	NR	rs79635379-T	0.245927	1E-28		0.023579	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1283	chr1	91590149	91590150	rs75740369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs75740369-G	NR	2E-12		0.0485	[0.035-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1284	chr1	91647428	91647429	rs79458861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1p22.2	NR	rs79458861-C	NR	4E-13		0.045	[0.033-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1284	chr1	91747005	91747006	rs10801851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p22.2		rs10801851-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1286	chr1	91900686	91900687	rs7528478	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	1p22.2	LOC1079854	rs7528478-?	0.471	8E-6	(adjusted for age, sex & diabetes)	0.023	NR unit increase	Illumina [621723]	N
1286	chr1	91919439	91919440	rs7526795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.2		rs7526795-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1286	chr1	91941499	91941500	rs66507060	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1p22.2	CDC7	rs66507060-G	0.6454	3E-9		0.4134	[0.28-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1286	chr1	91944136	91944137	rs12747494	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology and risky substance use	604 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	1p22.2		rs12747494-C	0.191	1E-6		1.56	[1.3-1.86]	Illumina [248101]	N
1286	chr1	91966444	91966445	rs13447455	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p22.1	CDC7	rs13447455-A	0.64	2E-8		0.38	[0.24-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1286	chr1	91986481	91986482	rs1983170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p22.1	CDC7	rs1983170-A	0.221	7E-9		0.02477974	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1286	chr1	91990486	91990487	rs12125947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p22.1	CDC7	rs12125947-C	0.487185	1E-10		0.014458519	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr1	92009788	92009789	rs115212412	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	1p22.1		rs115212412-T	NR	9E-6	(GLM)	17.1602	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1287	chr1	92013320	92013321	rs34456113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p22.1		rs34456113-T	NR	3E-10		0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1287	chr1	92021463	92021464	rs12134245	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p22.1	NR	rs12134245-T	0.4961	4E-6	(EA)	0.0288	[0.017-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1287	chr1	92041501	92041502	rs4658231	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1p22.1	CDC7, TGFBR3	rs4658231-A	NR	8E-7	(adults)	0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1287	chr1	92042244	92042245	rs11164971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.1		rs11164971-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1287	chr1	92048778	92048779	rs4658234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p22.1	NR	rs4658234-G	0.7716	9E-9		0.0295	[0.02-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1287	chr1	92064475	92064476	rs56034708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p22.1	RP11-91I11.1	rs56034708-A	0.131024	1E-10		0.02120146	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1287	chr1	92064475	92064476	rs56034708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p22.1	RP11-91I11.1	rs56034708-A	0.131006	5E-9		0.019299531	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1287	chr1	92064475	92064476	rs56034708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p22.1	NR	rs56034708-A	0.131203	1E-10		0.019107	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1287	chr1	92068966	92068967	rs1192404	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1p22.1	CDC7, TGFBR3	rs1192404-G	0.16	6E-20	(conditioned on rs12140637)	0.048	[0.038-0.058] unit decrease	Affymetrix [27624732] (imputed)	N
1287	chr1	92075133	92075134	rs1192414	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1p22.1	CDC7, TGFBR3	rs1192414-A	NR	3E-20	(EA)	0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1287	chr1	92075133	92075134	rs1192414	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1p22.1	CDC7, TGFBR3	rs1192414-A	NR	2E-23		0.014	[0.012-0.016] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p22.1	CDC7, TGFBR3	rs1192415-A	NR	1E-29		0.101	unit decrease	Illumina [15409056] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	1p22.1	CDC7, TGFBR3	rs1192415-G	0.194	4E-64		0.084	[0.074-0.094] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p22.1	TGFBR3	rs1192415-A	0.8122	2E-8		0.0182	[0.012-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p22.1	TGFBR3	rs1192415-A	0.8122	1E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p22.1	TGFBR3	rs1192415-A	0.8122	2E-47		0.044	[0.038-0.05] unit increase	Affymetrix [19819130] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p22.1		rs1192415-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p22.1		rs1192415-?	NR	9E-75				NR [~ 8900000] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	25861811	Li Z	2015-04-10	Hum Mol Genet	A common variant near TGFBR3 is associated with primary open angle glaucoma.	Glaucoma (primary open-angle)	2,735 East Asian ancestry cases, 590 African American cases, 121 South Asian ancestry cases, 58 South East Asian ancestry cases, 6,410 East Asian ancestry controls, 636 African American controls, 716 South Asian ancestry controls, 1,984 South East Asian ancestry controls	4,773 European ancestry cases, 3,006 East Asian ancestry cases, 497 African American cases, 453 South Asian ancestry cases, 208 South East Asian ancestry cases, 236 Middle East ancestry cases, 11,786 European ancestry controls, 8,754 East Asian ancestry controls, 304 African American controls, 2,496 South Asian ancestry controls, 2,785 South East Asian ancestry controls, 655 Middle East ancestry controls	1p22.1	CDC7, TGFBR3	rs1192415-G		2E-8		1.13		Illumina [~ 272000]	N
1287	chr1	92077096	92077097	rs1192415	21307088	Khor CC	2011-02-09	Hum Mol Genet	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc area	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	1p22.1	CDC7, TGFBR3	rs1192415-G	NR	8E-17	(Asian)	0.0959	[NR] mm2 increase	Illumina [551808]	N
1287	chr1	92077096	92077097	rs1192415	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	1p22.1	TGFBR3, CDC7	rs1192415-G	0.18	3E-28		0.06	[0.05-0.07] mm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1287	chr1	92077096	92077097	rs1192415	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1p22.1	HSP90B3P	rs1192415-A	NR	3E-7		0.245	[0.14-0.35] unit decrease	Illumina [~ 2740000] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1p22.1	CDC7, TGFBR3	rs4658101-A	0.19	7E-51		0.02	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1p22.1	CDC7-TGFBR3	rs4658101-A	0.19	9E-35		0.01	[0.0078-0.0122] unit increase	Affymetrix [at least 8002429] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p22.1	CDC7, TGFBR3	rs4658101-A	0.19	3E-160		0.06	unit increase	Affymetrix [8928767] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1p22.1	CDC7, TGFBR3	rs4658101-A		6E-81		0.089	[0.079-0.099] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1p22.1	CDC7, TGFBR3	rs4658101-A		2E-60	(EA)	0.089	[0.079-0.099] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1287	chr1	92077408	92077409	rs4658101	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	1p22.1	CDC7, TGFBR3	rs4658101-A	NR	1E-15		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1287	chr1	92080058	92080059	rs1192419	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	1p22.1	CDC7, TGFBR3	rs1192419-A	0.188	1E-18		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1287	chr1	92080058	92080059	rs1192419	28061514	Nannini DR	2017-01-01	Invest Ophthalmol Vis Sci	A Genome-Wide Association Study of Vertical Cup-Disc Ratio in a Latino Population.	Optic nerve measurement (cup-to-disc ratio)	3,596 Latino individuals	941 Latino individuals	1p22.1	CDC7, TGFBR3	rs1192419-A	0.29	1E-7		0.13	[NR] unit increase	Illumina [6844888] (imputed)	N
1287	chr1	92080058	92080059	rs1192419	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	1p22.1	CDC7, TGFBR3	rs1192419-A	0.18	8E-56		0.087	[0.075-0.099] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1287	chr1	92080058	92080059	rs1192419	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	1p22.1	CDC7, TGFBR3	rs1192419-A	0.18	4E-38	(EA)	0.085	[0.071-0.099] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1287	chr1	92106636	92106637	rs10874851	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p22.1	TGFBR3	rs10874851-A	0.4776	5E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix [19819130] (imputed)	N
1287	chr1	92106732	92106733	rs17504775	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1p22.1		rs17504775-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1288	chr1	92153973	92153974	rs11165262	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gillisia abundance in stool	5,959 Finnish ancestry individuals	NA	1p22.1		rs11165262-C	0.183936	1E-8		0.0458165	[0.03-0.062] unit decrease	Illumina [7980478] (imputed)	N
1288	chr1	92164099	92164100	rs4233430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p22.1		rs4233430-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1288	chr1	92169003	92169004	rs3767574	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	1p22.1	NR	rs3767574-?		2E-7	(PCB126)	0.28	[0.18-0.38] unit increase	Illumina [8736858] (imputed)	N
1288	chr1	92178334	92178335	rs2291477	28039329	Noordam R	2016-12-30	J Med Genet	A genome-wide interaction analysis of tricyclic/tetracyclic antidepressants and RR and QT intervals: a pharmacogenomics study from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	QT interval (tricyclic/tetracyclic antidepressant use interaction)	1,250 European ancestry users, 295 African American users, 1,886 Hispanic or Latino ancestry users, 40,701 European ancestry non-users, 9,940 African American non-users, 67,863 Hispanic or Latino ancestry non-users	NA	1p22.1	TGFBR3	rs2291477-C	0.884	3E-8	(Hispanic or Latino)	9.31	[6.04-12.58] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1288	chr1	92179917	92179918	rs17887218	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	1p22.1	NR	rs17887218-C	0.9352745	7E-7		1.1636025	[1.1-1.24]	Affymetrix [16396089] (imputed)	N
1288	chr1	92182698	92182699	rs12735851	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p22.1		rs12735851-G	0.913	2E-17				Affymetrix [10369434] (imputed)	N
1288	chr1	92192678	92192679	rs7532589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1p22.1		rs7532589-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1288	chr1	92194321	92194322	rs11165354	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	1p22.1	TGFBR3	rs11165354-A	0.78	4E-6	(All South Asians)	1.17	[1.10-1.25]	Illumina [536420]	N
1288	chr1	92195085	92195086	rs11466587	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p22.1		rs11466587-?	NR	2E-11		0.0248768	[0.018-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1288	chr1	92200381	92200382	rs2306888	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	dexamethasone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	1p22.1	TGFBR3	rs2306888-C	0.186	1E-6				Illumina [331281]	N
1288	chr1	92201698	92201699	rs12076549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.1		rs12076549-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1288	chr1	92211019	92211020	rs17131547	19249006	Xiong DH	2009-02-25	Am J Hum Genet	Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.	Bone mineral density	1,000 European ancestry individuals	4,925 European ancestry individuals, 350 Chinese ancestry hip fracture cases, 350 Chinese ancestry hip fracture controls, 2,955 Chinese ancestry individuals, 908 West African ancestry males	1p22.1	TGFBR3	rs17131547-?		1E-6	(spine BMD)	0.4974	unit decrease	Affymetrix [379319]	N
1288	chr1	92222088	92222089	rs12133753	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.1	TGFBR3	rs12133753-C	NR	2E-16		1.131	NR	Affymetrix, Illumina [8278136] (imputed)	N
1288	chr1	92224066	92224067	rs3738441	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1p22.1	TGFBR3	rs3738441-?	NR	9E-7	(AA)	0.039	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1288	chr1	92226533	92226534	rs79040524	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1p22.1	NR	rs79040524-A	0.0241	4E-7		0.2357	[0.14-0.33] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1288	chr1	92226533	92226534	rs79040524	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	1p22.1	NR	rs79040524-A	0.0241	3E-7		0.2417	[0.15-0.33] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1288	chr1	92239335	92239336	rs284200	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p22.1	TGFBR3	rs284200-C	0.630814	4E-13		0.0137754	[0.01-0.017] unit increase	NR [13737936] (imputed)	N
1288	chr1	92239335	92239336	rs284200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p22.1		rs284200-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1288	chr1	92239335	92239336	rs284200	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p22.1		rs284200-?	NR	3E-11		0.0140808	[0.0099-0.0183] unit increase	Affymetrix [20259828] (imputed)	N
1288	chr1	92240237	92240238	rs284201	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	1p22.1	TGFBR3	rs284201-?	0.27	2E-7		16.72	unit increase	Illumina [120975] (imputed)	N
1288	chr1	92240752	92240753	rs4658267	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	1p22.1	TGFBR3, BRDT, CDC7	rs4658267-A	0.319	9E-7		0.679	[NR] unit increase	Illumina [15635593] (imputed)	N
1288	chr1	92270069	92270070	rs284160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	1p22.1		rs284160-A	NR	3E-9		0.0572	[0.038-0.076] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
1288	chr1	92273643	92273644	rs10493859	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	1p22.1		rs10493859-A	0.0518	4E-13	(allelic)	0.513	[0.422-0.623]	Affymetrix [7842171] (imputed)	N
1289	chr1	92316572	92316573	rs11590254	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p22.1	TGFBR3	rs11590254-A	0.6886	4E-20		0.0186	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1289	chr1	92319780	92319781	rs17516329	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	1p22.1	TGFBR3	rs17516329-A	0.6859	2E-10		0.1417	[0.098-0.185] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1289	chr1	92349246	92349247	rs11583606	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis or neutropenia	45 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	1p22.1	TGFBR3	rs11583606-T	NR	2E-7		7.0	[3.37-14.5]	Illumina [~ 7000000] (imputed)	N
1289	chr1	92360366	92360367	rs141952974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.1		rs141952974-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1289	chr1	92374516	92374517	rs12140637	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1p22.1	TGFBR3, BRDT2	rs12140637-T	0.31	1E-9		0.026	[0.018-0.034] unit decrease	Affymetrix [27624732] (imputed)	N
1289	chr1	92375259	92375260	rs192291865	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1p22.1	TGFBR3	rs192291865-C	NR	7E-6		0.08739912	[0.049-0.126] unit increase	Affymetrix [9576485] (imputed)	N
1289	chr1	92381482	92381483	rs11165787	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p22.1	TGFBR3	rs11165787-A	0.6878	3E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1289	chr1	92381482	92381483	rs11165787	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p22.1	TGFBR3	rs11165787-A	0.6878	2E-21		0.0245	[0.019-0.03] unit increase	Affymetrix [19819130] (imputed)	N
1289	chr1	92384776	92384777	rs35075866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p22.1		rs35075866-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1290	chr1	92422245	92422246	rs12032808	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p22.1	BRDT	rs12032808-T	0.8435	3E-6		0.0412	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1290	chr1	92440389	92440391	rs571384891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p22.1	BRDT	rs571384891-C	0.024489	8E-12		0.0496433	[0.035-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr1	92470474	92470476	rs200648143	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	1p22.1		rs200648143-?	NR	5E-6		0.7042074	[0.4-1] unit decrease	Illumina [9901720] (imputed)	N
1290	chr1	92512220	92512221	rs1961162	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p22.1	NR	rs1961162-A	0.198	2E-8		0.00766274	[0.005-0.0103] unit increase	NR [9732723] (imputed)	N
1290	chr1	92528046	92528047	rs146378328	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis or neutropenia	45 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	1p22.1	EPHX4	rs146378328-G	NR	3E-7		8.31	[3.69-18.7]	Illumina [~ 7000000] (imputed)	N
1291	chr1	92554282	92554283	rs34856868	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p22.1	BTBD8	rs34856868-G	0.97	1E-8	(EA)	1.2156452		Affymetrix, Illumina [~ 9000000] (imputed)	N
1291	chr1	92554282	92554283	rs34856868	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p22.1	BTBD8	rs34856868-G	0.97	2E-6	(EA)	1.2122864	[1.13-1.29]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1291	chr1	92554282	92554283	rs34856868	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p22.1	BTBD8	rs34856868-A	0.0060	2E-6	(BMD )	0.04	[NR] g/cm2 increase	Illumina [899892]	N
1291	chr1	92616909	92616909	rs11406119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p22.1		rs11406119-CA	NR	4E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1291	chr1	92627190	92627191	rs143105156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p22.1		rs143105156-A	NR	4E-11		0.0678	[0.048-0.088] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1291	chr1	92665898	92665899	rs12753920	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1p22.1	KIAA1107, C1orf146	rs12753920-G	0.332	6E-7		1.11	[NR]	NR [6344733] (imputed)	N
1292	chr1	92670782	92670783	rs17131607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p22.1	NR	rs17131607-A	NR	3E-9		0.0448	[0.03-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1292	chr1	92727609	92727610	rs2391139	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p22.1	NR	rs2391139-T	0.201753	3E-15		0.0246704	[0.018-0.031] unit increase	Affymetrix [16585745] (imputed)	N
1292	chr1	92733768	92733769	rs185115434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.1		rs185115434-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p22.1		rs141094656-C	NR	3E-9		0.0615	[0.041-0.082] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1p22.1		rs141094656-T	0.0172	2E-6		0.224	[0.13-0.32] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p22.1	NR	rs141094656-T	0.985201	3E-9		0.052327	[0.035-0.07] unit decrease	NR [NR]	N
1292	chr1	92753335	92753336	rs141094656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p22.1	GLMN	rs141094656-C	0.0165	2E-14		0.1156561	[0.086-0.145] unit increase	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p22.1	GLMN	rs141094656-C	0.0164	5E-167		0.4129472	[0.38-0.44] unit increase	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p22.1	GLMN	rs141094656-C	0.0164	7E-176		0.4249568	[0.4-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p22.1	GLMN	rs141094656-C	0.0164	1E-20		0.1395836	[0.11-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92753335	92753336	rs141094656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p22.1	GLMN	rs141094656-C	0.0164	2E-99		0.3181212	[0.29-0.35] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92766437	92766438	rs115340020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p22.1	RPAP2	rs115340020-A	0.028322	1E-16		0.054948024	[0.042-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1292	chr1	92766437	92766438	rs115340020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p22.1	RPAP2	rs115340020-A	0.0286	2E-11		0.07137411	[0.05-0.092] unit increase	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92766437	92766438	rs115340020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p22.1	RPAP2	rs115340020-A	0.0286	1E-20		0.09930055	[0.078-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1292	chr1	92766437	92766438	rs115340020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p22.1	RPAP2	rs115340020-A	0.0286	3E-34		0.1305191	[0.11-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1293	chr1	92822869	92822870	rs12240065	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1p22.1		rs12240065-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1293	chr1	92823697	92823698	rs34090353	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1p22.1	RPAP2	rs34090353-C	0.361	1E-8		1.078		Illumina [715631] (imputed)	N
1293	chr1	92823697	92823698	rs34090353	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1p22.1	RPAP2	rs34090353-C	0.361	1E-8		1.078		Illumina [715631] (imputed)	N
1293	chr1	92828504	92828505	rs17519972	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and C-reactive protein levels (pleiotropy)	93,333 individuals	NA	1p22.1	RPAP2	rs17519972-?	NR	9E-8			[1.0719-1.1489]	NR [2418544]	N
1293	chr1	92841990	92841991	rs116505298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p22.1	RPAP2	rs116505298-T	0.035432	7E-10		0.036689427	[0.025-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1293	chr1	92841990	92841991	rs116505298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p22.1	NR	rs116505298-T	0.035607	5E-12		0.035396	[0.025-0.045] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p22.1		rs139795227-C	NR	5E-10		0.0623	[0.043-0.082] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1p22.1		rs139795227-A	0.985	2E-13				Affymetrix [10369434] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p22.1		rs139795227-A	0.985	5E-176				Affymetrix [10369434] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs139795227-A	0.985	9E-220				Affymetrix [10369434] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p22.1		rs139795227-C	0.04775	8E-19		0.5725	[0.45-0.7] unit decrease	Illumina [17926466] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p22.1		rs139795227-C	0.04797	2E-72		1.147	[1.03-1.27] unit decrease	Illumina [17914520] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on CD62L+ myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p22.1		rs139795227-C	0.04775	1E-19		0.5867	[0.46-0.71] unit decrease	Illumina [17926466] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs139795227-C	0.0147942	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
1293	chr1	92842366	92842367	rs139795227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p22.1	NR	rs139795227-C	0.015343	5E-18		0.068536	[0.053-0.084] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1293	chr1	92878406	92878407	rs115427247	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p22.1		rs115427247-C	0.97	1E-16				Affymetrix [10369434] (imputed)	N
1293	chr1	92878406	92878407	rs115427247	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p22.1	intergenic	rs115427247-T	0.0302	1E-35		0.1303333	[0.11-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1293	chr1	92904611	92904612	rs79900185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs79900185-C	0.0303881	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
1293	chr1	92923465	92923466	rs76337287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p22.1		rs76337287-T	0.197564	2E-10		0.017844677	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1293	chr1	92923465	92923466	rs76337287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p22.1	NR	rs76337287-T	0.197922	4E-14		0.018529	[0.014-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1293	chr1	92923466	92923467	rs186001783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs186001783-T	0.187342	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p22.1		rs150649461-C	NR	9E-333		0.3788	[0.36-0.4] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p22.1		rs150649461-C	0.04118	4E-10		0.4543	[0.31-0.6] unit decrease	Illumina [17914520] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p22.1	NR	rs150649461-C	0.014754	2E-14		0.07178956	[0.053-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p22.1		rs150649461-C	0.014752	3E-340		0.3836553	[0.36-0.4] unit increase	Affymetrix [93095623] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.1	intergenic	rs150649461-C	0.014754	2E-377		0.39975882	[0.38-0.42] unit increase	Affymetrix [93095623] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p22.1		rs150649461-C	0.014751	5E-37		0.11969867	[0.1-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs150649461-C	0.0144998	5E-587				Affymetrix, Illumina [23467995] (imputed)	N
1293	chr1	92925653	92925654	rs150649461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p22.1		rs150649461-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1293	chr1	92925706	92925712	rs141819830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p22.1		rs141819830-A	0.029431	3E-69		0.11655016	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1293	chr1	92925706	92925712	rs141819830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.1	intergenic	rs141819830-A	0.029424	3E-41		0.0888545	[0.076-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	92935410	92935411	rs6662618	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p22.1	GFI1, EVI5	rs6662618-?	NR	1E-7		1.14	[1.08-1.21]	Illumina [at least 5000000] (imputed)	N
1294	chr1	92935410	92935411	rs6662618	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and type 2 diabetes (pleiotropy)	49,192 individuals	NA	1p22.1	GFI1	rs6662618-?	NR	3E-10			[1.0965-1.1754]	NR [2426886]	N
1294	chr1	92939958	92939959	rs58394161	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.1	GFI1	rs58394161-C	NR	1E-14		1.1326311	NR	Affymetrix, Illumina [8278136] (imputed)	N
1294	chr1	92942351	92942352	rs6676846	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p22.1	NR	rs6676846-A	0.794322	1E-15		0.0296264	[0.022-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1294	chr1	92951209	92951210	rs6689470	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	1p22.1	EVI5	rs6689470-A		4E-10		1.24	[1.16-1.33]	Illumina [at least 8143088] (imputed)	N
1294	chr1	92967415	92967416	rs4000736	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p22.1	GFI1, EVI5	rs4000736-?		2E-9		0.032	[0.022-0.042] unit increase	Illumina [31500000] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs11164654-T	NR	7E-8		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs11164654-T	0.209	4E-8	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs11164654-T	NR	2E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs11164654-T	0.209	2E-9	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p22.1	GVI1, EVI5	rs11164654-C	0.79	2E-8		0.041	[0.027-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1294	chr1	92968311	92968312	rs11164654	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1p22.1	GVI1, EVI5	rs11164654-C	0.79	1E-9		0.044	[0.03-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1294	chr1	92975463	92975464	rs41286801	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p22.1	EVI5	rs41286801-A	0.16	1E-26		1.19		Illumina [161311]	N
1294	chr1	92979686	92979688	rs34299992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p22.1		rs34299992-T	NR	2E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1294	chr1	92981235	92981236	rs184721335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p22.1	EVI5	rs184721335-G	0.00426899999999997	1E-18		0.15441376	[0.12-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	92981235	92981236	rs184721335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.1	EVI5	rs184721335-G	0.00425799999999998	3E-16		0.14260155	[0.11-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	92981235	92981236	rs184721335	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p22.1	EVI5	rs184721335-G	0.0049	7E-11		0.195403	[0.14-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1294	chr1	92982441	92982442	rs5776148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p22.1		rs5776148-C	NR	1E-26		0.0227	[0.019-0.027] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1294	chr1	92993806	92993807	rs6603981	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	1p22.1	EVI5	rs6603981-C	0.1928	5E-15				Affymetrix, Illumina [2331072] (imputed)	N
1294	chr1	92993806	92993807	rs6603981	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p22.1	EVI5	rs6603981-T	0.806	3E-14	(Trans-ethnic initial)	0.0351	[0.027-0.044] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1294	chr1	92996816	92996820	rs140139063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p22.1		rs140139063-G	NR	1E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1294	chr1	92996816	92996820	rs140139063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p22.1		rs140139063-G	NR	6E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1294	chr1	93001429	93001430	rs2027061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs2027061-C	NR	1E-8		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93001429	93001430	rs2027061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs2027061-C	0.23	2E-8	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93001429	93001430	rs2027061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs2027061-C	NR	4E-10		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93001429	93001430	rs2027061	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs2027061-C	0.23	6E-10	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs7515577-C	NR	5E-8		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs7515577-C	0.203	2E-8	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs7515577-C	NR	2E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p22.1	NR	rs7515577-C	0.203	7E-10	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p22.1	EVI5	rs7515577-C	0.23	2E-8		0.037	[NR] unit decrease	NR [NR] (imputed)	N
1294	chr1	93009437	93009438	rs7515577	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p22.1	GVI1, EVI5	rs7515577-C	0.21	3E-8		1.18	[0.71-1.65] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1294	chr1	93010703	93010704	rs6658232	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p22.1	NR	rs6658232-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1294	chr1	93016227	93016228	rs12753280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p22.1	EVI5	rs12753280-C	0.7947	2E-44		0.06200764	[0.053-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1294	chr1	93023894	93023894	rs34643605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p22.1	EVI5	rs34643605-TCA	0.795125	3E-14		0.021570422	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	93032466	93032467	rs6422513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.1		rs6422513-?	NR	9E-38				NR [~ 8900000] (imputed)	N
1294	chr1	93032466	93032467	rs6422513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p22.1		rs6422513-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1294	chr1	93032582	93032583	rs6603991	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p22.1	NR	rs6603991-T	0.2223	1E-11	(Lingual)	14.338929	[10.21-18.47] unit increase	Affymetrix, Illumina [NR]	N
1294	chr1	93034022	93034023	rs1556562	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p22.1	EVI5	rs1556562-G	0.209968	2E-14		0.0190535	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1294	chr1	93034022	93034023	rs1556562	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p22.1	EVI5	rs1556562-G	0.209983	1E-10		0.0160289	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1294	chr1	93034022	93034023	rs1556562	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p22.1	EVI5	rs1556562-?	NR	2E-12		0.0211	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
1294	chr1	93037111	93037112	rs12743520	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	1p22.1		rs12743520-?	NR	1E-8		0.93	[0.91-0.96]	Illumina [5170515] (imputed)	N
1294	chr1	93037111	93037112	rs12743520	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1p22.1	EVI5	rs12743520-?	NR	4E-8		1.0752687		NR [74888535] (imputed)	N
1294	chr1	93037111	93037112	rs12743520	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1p22.1	EVI5, FAM69A, GFI1, RPL5, SNORA66, SNORD21	rs12743520-?	NR	7E-9		1.0752687	[1.04-1.1]	Affymetrix [74888535] (imputed)	N
1294	chr1	93041576	93041577	rs78232152	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	1p22.1		rs78232152-?	NR	4E-7				Affymetrix [7338548] (imputed)	N
1294	chr1	93055537	93055538	rs143705965	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs143705965-C	0.971	2E-16				Affymetrix [10369434] (imputed)	N
1294	chr1	93055940	93055941	rs139910405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p22.1	EVI5	rs139910405-A	0.00721099999999997	7E-16		0.1067887	[0.081-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	93055940	93055941	rs139910405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p22.1	EVI5	rs139910405-A	0.00722599999999996	2E-13		0.0837075	[0.06-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr1	93055940	93055941	rs139910405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs139910405-A	0.00746228	7E-11				Affymetrix, Illumina [24246363] (imputed)	N
1295	chr1	93062610	93062611	rs6603997	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p22.1	EVI5	rs6603997-?		2E-8		0.0323	[0.021-0.043] unit increase	Illumina [31500000] (imputed)	N
1295	chr1	93073227	93073228	rs11808092	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels or multiple sclerosis	3,599 individuals, 1,956 Mexican American individuals, 5,545 European ancestry multiple sclerosis cases, 12,153 European ancestry non-multiple sclerosis controls		1p22.1	EVI5	rs11808092-A	NR	2E-8				Illumina [up to 2529394] (imputed)	N
1295	chr1	93082371	93082372	rs34231012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1p22.1		rs34231012-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1295	chr1	93104654	93104655	rs4294422	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p22.1	NR	rs4294422-G	0.359334	7E-11		0.0193786	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1295	chr1	93110599	93110600	rs12143685	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p22.1	NR	rs12143685-C	0.01394	1E-9	(F2)	0.03412	NR unit increase	Illumina [1671387] (imputed)	N
1295	chr1	93117422	93117423	rs141113659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p22.1		rs141113659-C	NR	5E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1295	chr1	93119409	93119410	rs11578098	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1p22.1	GFI1, EVI5	rs11578098-?	NR	5E-7		1.13	[1.08-1.19]	Illumina [at least 5000000] (imputed)	N
1295	chr1	93135194	93135195	rs12030613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p22.1		rs12030613-G	0.228	1E-13				Affymetrix [10369434] (imputed)	N
1295	chr1	93137529	93137529	rs145955280	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p22.1	EVI5	rs145955280-?	0.9397	2E-12		0.084	[0.06-0.108] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1295	chr1	93137529	93137529	rs145955280	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p22.1	EVI5	rs145955280-?	0.9397	5E-17		0.1007	[0.077-0.124] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1295	chr1	93148376	93148377	rs11810217	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p22.1	EVI5	rs11810217-A	NR	6E-15		1.15	[1.13-1.16]	Illumina [465434]	N
1295	chr1	93152634	93152635	rs11809700	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.1	EVI5	rs11809700-T	NR	3E-30		1.1300713	NR	Affymetrix, Illumina [8278136] (imputed)	N
1295	chr1	93159926	93159927	rs117711462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1p22.1		rs117711462-A	0.00385	1E-8		0.1633	[0.11-0.22] unit increase	Illumina [13476599] (imputed)	N
1296	chr1	93219906	93219907	rs6604015	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p22.1	NA	rs6604015-T	0.9077	1E-11		0.0183	[0.013-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1296	chr1	93229908	93229909	rs116631966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p22.1	NR	rs116631966-A	0.02482	1E-10		0.040344	[0.028-0.053] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1296	chr1	93251791	93251791	rs199752470	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	1p22.1		rs199752470-A	0.11	1E-7		0.0729	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1296	chr1	93303113	93303114	rs11540832	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1p22.1		rs11540832-?	NR	3E-32		0.0936293	[0.078-0.11] unit increase	NR [9800000] (imputed)	N
1296	chr1	93303113	93303114	rs11540832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.1		rs11540832-?	NR	5E-33				NR [~ 8900000] (imputed)	N
1296	chr1	93303602	93303603	rs6604026	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	1p22.1	RPL5, EVI5	rs6604026-G	0.28	3E-6		1.17	[NR]	Illumina [302098]	N
1296	chr1	93303602	93303603	rs6604026	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	1p22.1	RPL5	rs6604026-C	0.29	8E-6		1.15	[1.08-1.22]	Affymetrix [334923]	N
1296	chr1	93304583	93304584	rs189162117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p22.1	RPL5	rs189162117-A	0.00851299999999999	1E-11		0.08218701	[0.059-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
1296	chr1	93304583	93304584	rs189162117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p22.1	RPL5	rs189162117-A	0.008548	4E-12		0.08293542	[0.06-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
1296	chr1	93304583	93304584	rs189162117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p22.1	NR	rs189162117-A	0.00883	3E-13		0.072153	[0.053-0.092] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1296	chr1	93304583	93304584	rs189162117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p22.1		rs189162117-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1296	chr1	93308797	93308798	rs2244588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p22.1		rs2244588-A	NR	6E-16		0.0357	[0.027-0.044] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1297	chr1	93323970	93323971	rs10874746	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p22.1	RPL5	rs10874746-T	0.37	7E-11		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1297	chr1	93346927	93346928	rs35183060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p22.1		rs35183060-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1297	chr1	93355245	93355246	rs2774952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p22.1		rs2774952-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1297	chr1	93364541	93364542	rs117631020	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p22.1	Intergenic	rs117631020-?		2E-6		1.0752687	[1.04-1.11]	Illumina [7645193] (imputed)	N
1297	chr1	93383671	93383672	rs12733767	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p22.1	DIPK1A	rs12733767-T	0.1024	9E-14		0.0233	[0.017-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1297	chr1	93400348	93400349	rs12757307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p22.1	FAM69A	rs12757307-A	0.108793	4E-11		0.02385677	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1297	chr1	93401836	93401837	rs12745968	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p22.1	NR	rs12745968-?	NR	8E-7		1.2527	[NR]	Affymetrix [722112]	N
1297	chr1	93408100	93408101	rs114801796	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	1p22.1	FAM69A	rs114801796-C	0.017	4E-8	(EA)	0.221	[0.14-0.3] unit increase	Affymetrix [at least 897981] (imputed)	N
1297	chr1	93426166	93426167	rs945631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p22.1	FAM69A	rs945631-A	0.041397	5E-10		0.035398632	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1297	chr1	93426166	93426167	rs945631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p22.1	FAM69A	rs945631-A	0.041396	5E-13		0.04117373	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1297	chr1	93426166	93426167	rs945631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs945631-A	0.0340655	9E-19				Affymetrix, Illumina [24588908] (imputed)	N
1297	chr1	93426166	93426167	rs945631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p22.1	NR	rs945631-A	0.041858	3E-20		0.043212	[0.034-0.052] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1297	chr1	93426166	93426167	rs945631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p22.1		rs945631-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1297	chr1	93426166	93426167	rs945631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.1		rs945631-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1297	chr1	93426166	93426167	rs945631	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	1p22.1	NR	rs945631-A	0.0302	3E-6	(Trans/trans-18:2, EA)	0.0057	[0.0033-0.0081] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1297	chr1	93426868	93426869	rs1415069	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p22.1	FAM69A	rs1415069-G	NR	3E-8		1.0741138	NR	Affymetrix, Illumina [8278136] (imputed)	N
1297	chr1	93427986	93427987	rs115490375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p22.1	FAM69A	rs115490375-G	0.024854	1E-9		0.042915516	[0.029-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr1	93464768	93464769	rs4847226	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1p22.1	NR	rs4847226-?	NR	4E-6				Illumina [NR] (imputed)	N
1298	chr1	93466061	93466062	rs6666223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p22.1		rs6666223-C	0.36929	2E-9		0.013849422	[0.0093-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr1	93466061	93466062	rs6666223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p22.1	NR	rs6666223-C	0.368678	6E-11		0.012582	[0.0088-0.0163] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1298	chr1	93466401	93466402	rs475009	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1p22.1	NR	rs475009-?	NR	6E-6				Illumina [NR] (imputed)	N
1298	chr1	93466959	93466960	rs11164855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p22.1		rs11164855-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1298	chr1	93468178	93468179	rs17381406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p22.1		rs17381406-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1298	chr1	93469864	93469865	rs481214	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p22.1	FAM69A, MTF2	rs481214-A	0.6063	2E-8		1.0234712		Affymetrix [11880941] (imputed)	N
1298	chr1	93475105	93475106	rs591820	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs591820-G	0.601	6E-14				Affymetrix [10369434] (imputed)	N
1298	chr1	93476453	93476454	rs6661537	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs6661537-C	0.088	9E-39				Affymetrix [10369434] (imputed)	N
1298	chr1	93478530	93478531	rs11164861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p22.1		rs11164861-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1298	chr1	93487127	93487128	rs61523335	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	1p22.1	MTF2	rs61523335-T	0.8543	7E-6		0.0065	[0.0038-0.0092] unit increase	Affymetrix [~ 7740000] (imputed)	N
1298	chr1	93490026	93490027	rs524045	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	1p22.1	MTF2, LOC100133115	rs524045-A	0.1151	9E-7		4.918	z score increase	Affymetrix, Illumina [up to 1994688]	N
1298	chr1	93508181	93508182	rs2785610	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p22.1		rs2785610-G	0.797	3E-40				Affymetrix [10369434] (imputed)	N
1298	chr1	93508181	93508182	rs2785610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p22.1	intergenic	rs2785610-A	0.203371	2E-20		0.026137738	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr1	93521091	93521092	rs520885	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	1p22.1	MTF2	rs520885-?		5E-6				Illumina [5970354] (imputed)	N
1298	chr1	93534263	93534264	rs6700994	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs6700994-T	0.206	9E-9				Affymetrix [10369434] (imputed)	N
1298	chr1	93538948	93538949	rs11807602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p22.1		rs11807602-G	NR	1E-8		0.0174	[0.011-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1298	chr1	93538948	93538949	rs11807602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p22.1		rs11807602-G	0.189501	6E-11		0.0178409	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr1	93538948	93538949	rs11807602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p22.1		rs11807602-G	0.189475	3E-12		0.019914094	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr1	93538948	93538949	rs11807602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p22.1		rs11807602-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1298	chr1	93539382	93539383	rs12385720	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p22.1	NR	rs12385720-G	0.371007	7E-19		0.00698484	[0.0053-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1298	chr1	93539382	93539383	rs12385720	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p22.1	NR	rs12385720-G	0.371007	5E-16		0.00736475	[0.0055-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1298	chr1	93544719	93544720	rs78737365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p22.1	Intergenic	rs78737365-T	0.0161	3E-8	(MTAG)	0.0396	[0.026-0.054] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr1	93547830	93547830	rs11380988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p22.1		rs11380988-CT	NR	3E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1298	chr1	93547830	93547830	rs11380988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p22.1		rs11380988-CT	NR	2E-15		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1298	chr1	93565122	93565123	rs2749732	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p22.1	MTF2	rs2749732-?	NR	3E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
1299	chr1	93595305	93595306	rs2281525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p22.1	MTF2	rs2281525-C	0.701363	3E-22		0.02351906	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1299	chr1	93595305	93595306	rs2281525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p22.1	MTF2	rs2281525-C	0.701376	7E-25		0.024929998	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1299	chr1	93595305	93595306	rs2281525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p22.1		rs2281525-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1299	chr1	93609490	93609490	rs148192960	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1p22.1		rs148192960-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1299	chr1	93626381	93626382	rs1967721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p22.1	Intergenic	rs1967721-C	0.8393	3E-10		0.0194	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1299	chr1	93628012	93628013	rs4847401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.1		rs4847401-C	0.3475	2E-16	(conditional-joint)	0.0122	[0.0093-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1299	chr1	93634589	93634590	rs6685271	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	1p22.1	TMED5	rs6685271-?	NR	1E-10		0.0387	[0.027-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1299	chr1	93639595	93639596	rs12044657	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p22.1	NR	rs12044657-T	0.3451	1E-17				NR [9056863] (imputed)	N
1299	chr1	93646311	93646312	rs112840306	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	1p22.1		rs112840306-?	NR	4E-6		214.154	[211.86-216.45]	NR [663083]	N
1299	chr1	93649731	93649732	rs6682670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p22.1		rs6682670-G	NR	3E-12		0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1299	chr1	93670583	93670584	rs17386609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p22.1	NR	rs17386609-T	NR	3E-11		0.0323	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1299	chr1	93675573	93675574	rs115453772	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p22.1	CCDC18	rs115453772-C	0.985	5E-6	(EA)	0.428	[0.24-0.61] unit decrease	Illumina [NR] (imputed)	N
1299	chr1	93677268	93677269	rs2765545	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	1p22.1	CCDC18	rs2765545-A	0.6349	5E-7	(Japanese)	0.0211	[0.013-0.029] unit increase	Illumina [1986983] (imputed)	N
1299	chr1	93678967	93678968	rs661126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p22.1	CCDC18	rs661126-G	0.624933	9E-12		0.0162099	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1299	chr1	93678967	93678968	rs661126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs661126-G	0.615512	5E-28				Affymetrix, Illumina [19872809] (imputed)	N
1299	chr1	93683462	93683463	rs6671070	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p22.1	NR	rs6671070-?	NR	4E-8				Affymetrix [NR]	N
1300	chr1	93716973	93716974	rs797680	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p22.1	CCDC18	rs797680-T	0.3769	8E-12		0.02510143	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1300	chr1	93716973	93716974	rs797680	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p22.1	CCDC18	rs797680-T	0.3768	3E-11		0.02437775	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1300	chr1	93734144	93734144	rs373293297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	1p22.1		rs373293297-AAAAC	0.315852	2E-10		0.0288487	[0.02-0.038] unit decrease	Illumina [13471903] (imputed)	N
1300	chr1	93738515	93738515	rs35797862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p22.1	NR	rs35797862-I	0.379328	6E-29		0.023425	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1300	chr1	93738515	93738515	rs35797862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p22.1	CCDC18, RP4-717I23.3	rs35797862-AAG	0.3782	7E-10		0.02264445	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1300	chr1	93738515	93738515	rs35797862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p22.1	CCDC18, RP4-717I23.3	rs35797862-AAG	0.3782	2E-10		0.02344345	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1300	chr1	93738515	93738515	rs35797862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p22.1	CCDC18, RP4-717I23.3	rs35797862-AAG	0.3782	1E-12		0.02612687	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1300	chr1	93747682	93747683	rs7526112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p22.1		rs7526112-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1300	chr1	93747682	93747683	rs7526112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.1		rs7526112-T	0.6406	2E-17		0.0124	[0.0095-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1300	chr1	93747682	93747683	rs7526112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p22.1	Intergenic	rs7526112-T	0.6406	1E-18	(MTAG)	0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1300	chr1	93756191	93756192	rs7418101	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p22.1	NR	rs7418101-G	0.622174	4E-10		0.0155018	[0.01-0.021] unit increase	Affymetrix [16585745] (imputed)	N
1300	chr1	93787866	93787867	rs6541349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p22.1	Intergenic	rs6541349-T	0.8389	6E-13	(MTAG)	0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1300	chr1	93814410	93814411	rs3767962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p22.1		rs3767962-A	0.397469	1E-9		0.0240598	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1300	chr1	93814410	93814411	rs3767962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p22.1	DR1	rs3767962-G	0.602795	6E-11		0.014675852	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr1	93814699	93814700	rs116807672	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p22.1	DR1	rs116807672-C	0.982	1E-6	(EA)	0.424	[0.25-0.59] unit decrease	Illumina [NR] (imputed)	N
1300	chr1	93814824	93814825	rs771462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p22.1		rs771462-A	NR	6E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1300	chr1	93816399	93816400	rs12133576	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p22.1	DR1	rs12133576-A	0.368657	2E-15		0.00189551	[0.0014-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1300	chr1	93816399	93816400	rs12133576	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p22.1	DR1	rs12133576-A	0.37	2E-12		7.02	z-score increase	Affymetrix [4311822] (imputed)	N
1300	chr1	93816399	93816400	rs12133576	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1p22.1		rs12133576-A	0.4224	5E-8		0.006	[0.0038-0.0082] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1300	chr1	93816399	93816400	rs12133576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p22.1		rs12133576-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p22.1	DR1	rs4847240-G	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p22.1	DR1	rs4847240-G	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p22.1	DR1	rs4847240-G	NR	9E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p22.1	DR1	rs4847240-G	NR	6E-7				Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	3E-6		0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p22.1	DR1	rs4847240-G	NR	5E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p22.1	DR1	rs4847240-G	NR	4E-28				Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p22.1	DR1	rs4847240-G	NR	1E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p22.1	DR1	rs4847240-G	NR	4E-31				Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p22.1	DR1	rs4847240-G	NR	4E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p22.1	DR1	rs4847240-G	NR	3E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	8E-12	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	3E-7	(Asian)	0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	3E-19		0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	6E-9	(Asian)	0.008278	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93817945	93817946	rs4847240	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p22.1	DR1	rs4847240-G	NR	3E-15		0.007775	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1300	chr1	93818448	93818453	rs66850500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1p22.1	NR	rs66850500-A	NR	2E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1300	chr1	93820683	93820684	rs6658257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p22.1		rs6658257-A	0.397842	2E-8		0.0228432	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1300	chr1	93820683	93820684	rs6658257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p22.1		rs6658257-A	0.397836	9E-10		0.0246229	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1300	chr1	93820683	93820684	rs6658257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p22.1		rs6658257-G	NR	9E-21		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1300	chr1	93829247	93829248	rs4847412	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	1p22.1	NR	rs4847412-C	0.4128	1E-17				Affymetrix, Illumina [at least 2500000] (imputed)	N
1300	chr1	93830409	93830409	rs201778749	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p22.1		rs201778749-T	0.364566	5E-9		0.0246483	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1300	chr1	93832564	93832565	rs7535214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p22.1		rs7535214-A	0.368937	2E-10		0.0256867	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1300	chr1	93836217	93836218	rs698927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p22.1		rs698927-C	NR	2E-32		0.03	[0.025-0.035] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1300	chr1	93836217	93836218	rs698927	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p22.1	DR1	rs698927-A	0.816222	3E-22		0.0245571	[0.02-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1300	chr1	93837132	93837133	rs12752223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	1p22.1		rs12752223-C	0.614025	7E-12		0.0331974	[0.024-0.043] unit decrease	Illumina [13465896] (imputed)	N
1300	chr1	93837132	93837133	rs12752223	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p22.1	NR	rs12752223-T	0.4	4E-21		0.0175	[0.014-0.021] unit decrease	NR [NR]	N
1300	chr1	93837132	93837133	rs12752223	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1p22.1	DR1	rs12752223-T	0.396475	2E-8		0.0374831	[0.024-0.051] unit decrease	Affymetrix [9463307] (imputed)	N
1300	chr1	93837780	93837784	rs145882729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p22.1	DR1	rs145882729-A	0.630533	4E-10		0.014272251	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1300	chr1	93843433	93843446	rs771291564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p22.1		rs771291564-A	NR	8E-10		0.0224	[0.015-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1300	chr1	93843436	93843437	rs7548688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p22.1		rs7548688-A	NR	6E-10		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1300	chr1	93843436	93843437	rs7548688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs7548688-A	0.786195	7E-13				Affymetrix, Illumina [20825802] (imputed)	N
1300	chr1	93846652	93846653	rs771481	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p22.1	DR1	rs771481-T	0.816181	9E-32		0.0288308	[0.024-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1300	chr1	93847189	93847190	rs1746437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p22.1	NR	rs1746437-T	0.71849	2E-14		0.016962	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1301	chr1	93853014	93853015	rs11164916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p22.1		rs11164916-C	NR	2E-25		0.0188	[0.015-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1301	chr1	93853014	93853015	rs11164916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p22.1		rs11164916-C	NR	4E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1301	chr1	93854185	93854186	rs7417952	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p22.1	DR1, FNBP1L	rs7417952-?		2E-14		0.0341	[0.025-0.043] unit decrease	Illumina [31500000] (imputed)	N
1301	chr1	93854185	93854186	rs7417952	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p22.1	DR1	rs7417952-C	0.3964	3E-10		0.0234	[0.016-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1301	chr1	93854185	93854186	rs7417952	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1p22.1	NR	rs7417952-C	0.6158	3E-6	(women)	0.0267	[0.016-0.038] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1301	chr1	93854516	93854517	rs2114273	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p22.1	DR1, FNBP1L	rs2114273-?		1E-10		0.0248	[0.017-0.032] unit increase	Illumina [31500000] (imputed)	N
1301	chr1	93854516	93854517	rs2114273	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	1p22.1	FNBP1L, DR1	rs2114273-?	NR	6E-10		0.02806	[0.019-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1301	chr1	93858288	93858289	rs1365298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p22.1		rs1365298-A	NR	4E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1301	chr1	93858288	93858289	rs1365298	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p22.1	DR1, FNBP1L	rs1365298-A	0.18	2E-10		6.38	z-score increase	Affymetrix [4312306] (imputed)	N
1301	chr1	93858288	93858289	rs1365298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1p22.1	NR	rs1365298-A	NR	3E-10		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1301	chr1	93858291	93858292	rs1365297	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p22.1		rs1365297-A	0.815785	3E-8		0.0284374	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1301	chr1	93858291	93858292	rs1365297	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p22.1	DR1	rs1365297-A	0.815896	9E-13		0.0183261	[0.013-0.023] unit increase	Affymetrix [NR] (imputed)	N
1301	chr1	93862019	93862020	rs10874777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs10874777-C	0.62095	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1301	chr1	93862019	93862020	rs10874777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p22.1	NR	rs10874777-C	0.632171	2E-12		0.013487	[0.0097-0.0172] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1301	chr1	93862019	93862020	rs10874777	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p22.1	intergenic	rs10874777-T	0.4369	7E-18		0.0244	[0.019-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1301	chr1	93865390	93865391	rs12138486	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p22.1	NR	rs12138486-C	0.218702	3E-12		0.0170397	[0.012-0.022] unit decrease	NR [NR]	N
1301	chr1	93866109	93866110	rs150429317	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p22.1		rs150429317-G	0.959343	4E-8		0.0512836	[0.033-0.07] unit increase	NR [11722792] (imputed)	N
1301	chr1	93866109	93866110	rs150429317	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1p22.1		rs150429317-G	0.959339	4E-8		0.0509642	[0.033-0.069] unit decrease	NR [11722792] (imputed)	N
1301	chr1	93866109	93866110	rs150429317	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p22.1		rs150429317-G	0.959339	5E-8		0.0504262	[0.032-0.069] unit decrease	NR [11722792] (imputed)	N
1301	chr1	93873454	93873455	rs143262451	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p22.1	Intergenic	rs143262451-A	0.996	7E-7	(AA)	0.353	NR unit increase	Illumina [NR] (imputed)	N
1301	chr1	93876428	93876429	rs2114271	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p22.1	FNBP1L	rs2114271-A	0.18926	7E-11		0.00325839	[0.0023-0.0042] unit increase	Affymetrix [13995440] (imputed)	N
1301	chr1	93891838	93891839	rs11164924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1p22.1		rs11164924-T	NR	3E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1301	chr1	93939869	93939870	rs11164938	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p22.1		rs11164938-A	0.39	4E-13		7.24	z score increase	Affymetrix [9061022] (imputed)	N
1301	chr1	93939869	93939870	rs11164938	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p22.1	NR	rs11164938-A	0.3854	3E-13				NR [9056863] (imputed)	N
1301	chr1	93952701	93952702	rs2624436	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p22.1		rs2624436-A	0.39	3E-19		8.96	z score increase	Affymetrix [9061022] (imputed)	N
1302	chr1	93981949	93981950	rs10518536	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p22.1	FNBP1L	rs10518536-A	0.981	1E-6	(EA)	0.414	[0.25-0.58] unit decrease	Illumina [NR] (imputed)	N
1302	chr1	94002232	94002233	rs3767967	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p22.1		rs3767967-A	0.39	9E-40		13.2	z score increase	Affymetrix [9061022] (imputed)	N
1302	chr1	94019560	94019561	rs114771147	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1p22.1	NR	rs114771147-A	NR	4E-6		0.4536	[0.26-0.65] unit decrease	Illumina [11133794] (imputed)	N
1302	chr1	94028712	94028713	rs1417884	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	1p22.1	BCAR3	rs1417884-?		9E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
1302	chr1	94038774	94038775	rs237436	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p22.1		rs237436-T	0.2295	6E-8		39.33005	z score increase	NR [6814003]	N
1302	chr1	94049236	94049237	rs3950119	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	1p22.1	BCAR3	rs3950119-G	0.2336	4E-6		0.2674	[0.16-0.37] unit increase	Illumina [533687]	N
1302	chr1	94050220	94050221	rs236318	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p22.1	BCAR3	rs236318-?	NR	9E-9		0.013588152	[0.009-0.0182] unit decrease	NR [7306098]	N
1302	chr1	94050220	94050221	rs236318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p22.1		rs236318-C	0.2346	7E-10		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1302	chr1	94050220	94050221	rs236318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p22.1	Intergenic	rs236318-C	0.2346	3E-10	(MTAG)	0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr1	94050240	94050241	rs12066343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p22.1	NR	rs12066343-G	0.202849	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
1302	chr1	94050910	94050911	rs7543734	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p22.1	BCAR3	rs7543734-C	0.2056	3E-9		0.0031	[0.0021-0.0041] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1302	chr1	94050910	94050911	rs7543734	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p22.1	BCAR3	rs7543734-C	0.2012	4E-11		0.0031	[0.0021-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1302	chr1	94050910	94050911	rs7543734	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1p22.1	BCAR3	rs7543734-C	0.2056	6E-6		0.0046	[0.0026-0.0066] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1302	chr1	94051349	94051350	rs7514579	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p22.1	BCAR3	rs7514579-A	0.771	2E-11		0.1969	[0.14-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1302	chr1	94051486	94051487	rs7555302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p22.1	NR	rs7555302-G	0.203193	6E-13		0.016478	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1302	chr1	94051913	94051914	rs11579685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p22.1	BCAR3	rs11579685-C	NR	5E-18		0.0314021	[0.024-0.039] unit increase	Affymetrix [321788] (imputed)	N
1302	chr1	94054642	94054643	rs62001028	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	1p22.1	BCAR3	rs62001028-?	NR	5E-7				Illumina [83898]	N
1302	chr1	94063843	94063844	rs3767977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p22.1	BCAR3, RP5-1033H22.2	rs3767977-A	NR	2E-10		0.0216137	[0.015-0.028] unit increase	Affymetrix [321788] (imputed)	N
1302	chr1	94064681	94064682	rs236335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p22.1		rs236335-C	NR	6E-13		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1302	chr1	94077246	94077247	rs12739747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p22.1	BCAR3	rs12739747-A	NR	3E-9		0.0246046	[0.016-0.033] unit increase	Affymetrix [321788] (imputed)	N
1303	chr1	94125609	94125609	rs76729025	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p22.1	BCAR3	rs76729025-CGT	NR	7E-11		0.0283496	[0.02-0.037] unit increase	Affymetrix [321788] (imputed)	N
1303	chr1	94143718	94143719	rs1011903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1p22.1		rs1011903-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1303	chr1	94158893	94158894	rs111702530	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p22.1		rs111702530-C	0.983	1E-9				Affymetrix [10369434] (imputed)	N
1303	chr1	94174518	94174519	rs6660968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p22.1	BCAR3	rs6660968-A	NR	1E-9		0.0252762	[0.017-0.033] unit increase	Affymetrix [321788] (imputed)	N
1303	chr1	94201057	94201058	rs79117505	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p22.1	NR	rs79117505-G	0.0307499	2E-9		0.0527864	[0.036-0.07] unit decrease	NR [19129689] (imputed)	N
1304	chr1	94342563	94342564	rs3747965	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	1p22.1	DNTTIP2	rs3747965-G	0.45	5E-6	(female)	1.17	[0.68-1.66] unit decrease	Illumina [6380737] (imputed)	N
1304	chr1	94342563	94342564	rs3747965	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	1p22.1	DNTTIP2	rs3747965-?	NR	1E-8	(total PUFA)			Illumina [621723]	N
1304	chr1	94342563	94342564	rs3747965	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	1p22.1	DNTTIP2	rs3747965-?	NR	1E-7	(omega-6 PUFA)			Illumina [621723]	N
1304	chr1	94342563	94342564	rs3747965	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	1p22.1	DNTTIP2	rs3747965-?	NR	1E-7	(linoleic acid)			Illumina [621723]	N
1305	chr1	94393309	94393310	rs188301220	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1p22.1	MTND4P11	rs188301220-C	NR	5E-6		0.5140511	[0.29-0.74] unit increase	Affymetrix [9576485] (imputed)	N
1305	chr1	94398593	94398594	rs185345278	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	1p22.1	GCLM	rs185345278-A	0.0216	5E-6		2.8735633	[1.83-4.52]	Illumina [7521072] (imputed)	N
1305	chr1	94444059	94444060	rs11165052	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p22.1	FAM69A, GCLM, ABCA4	rs11165052-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1305	chr1	94462768	94462769	rs17110736	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1p22.1	ABCA4	rs17110736-?	0.35	5E-6		2.08	[1.52-2.86]	Affymetrix [832357]	N
1305	chr1	94471153	94471154	rs4147863	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p22.1	GCLM	rs4147863-?	NR	1E-6	(uridine)	0.2383063	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1305	chr1	94476034	94476035	rs2065712	34608871	Chakraborty S	2021-01-01	J Genet	A genomewide association study on individuals with occludable angles identifies potential risk loci for intraocular pressure.	Intraocular pressure in individuals with narrow occludable anterior chamber angle	240 Indian ancestry individuals	89 Indian ancestry individuals	1p22.1		rs2065712-C	NR	2E-6				Illumina [NR]	N
1306	chr1	94533013	94533014	rs1931575	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		1p22.1	ABCA4	rs1931575-T	NR	2E-6		0.0178	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1306	chr1	94539829	94539830	rs137866734	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1p22.1	NR	rs137866734-?	NR	9E-7		0.1581	[0.095-0.221] unit increase	Illumina [~ 7800000] (imputed)	N
1306	chr1	94553437	94553438	rs560426	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p22.1	NR	rs560426-G	NR	3E-12	(Meta-All, NSCL/P)	1.42	[1.243-1.623]	NR [497084]	N
1306	chr1	94553437	94553438	rs560426	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1p22.1	IRF6	rs560426-G	NR	5E-10	(Meta-All, NSCLP)			NR [497084]	N
1306	chr1	94558109	94558110	rs66515264	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1p22.1	ARHGAP29	rs66515264-?	NR	6E-15		1.4	[1.24-1.59] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1306	chr1	94558109	94558110	rs66515264	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1p22.1	ARHGAP29	rs66515264-?	NR	4E-17		1.506	[1.31-1.73] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1306	chr1	94558109	94558110	rs66515264	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1p22.1	ARHGAP29	rs66515264-?	NR	2E-8	(Asian)	1.63	[1.39-1.91]	Illumina [6090031] (imputed)	N
1306	chr1	94570015	94570016	rs481931	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1p22.1	ABCA4	rs481931-C	0.63	1E-12		1.25	[NR]	Illumina [803202]	N
1306	chr1	94575307	94575308	rs3789432	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1p22.1	ARHGAP29	rs3789432-?	NR	1E-8	(Asian)	1.4084507		Illumina [6090031] (imputed)	N
1306	chr1	94582226	94582227	rs4147804	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p22.1		rs4147804-A	0.35	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
1306	chr1	94611299	94611300	rs2774920	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1p22.1	ABCA4, ARHGAP29	rs2774920-G	0.085	1E-6		0.0513	[NR] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1307	chr1	94656532	94656533	rs34105118	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	1p22.1		rs34105118-G	0.0300389	3E-8		0.0735984	[0.048-0.1] unit increase	Illumina [7980478] (imputed)	N
1307	chr1	94667969	94667970	rs1541098	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p22.1	ARHGAP29	rs1541098-T	0.76	2E-13		7.38	z-score increase	Affymetrix [4314223] (imputed)	N
1307	chr1	94674725	94674726	rs2274788	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	1p22.1	GCLM	rs2274788-C	0.25	1E-6	(EA-triglyceride response)	23.07	[13.8-32.34] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1307	chr1	94684136	94684137	rs80066701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p22.1		rs80066701-A	NR	6E-9		0.0258	[0.017-0.034] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1307	chr1	94684136	94684137	rs80066701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p22.1		rs80066701-A	NR	2E-18		0.0353	[0.027-0.043] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1307	chr1	94684136	94684137	rs80066701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p22.1	NR	rs80066701-A	NR	2E-15		0.0352	[0.027-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1307	chr1	94684136	94684137	rs80066701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p22.1	NR	rs80066701-A	NR	1E-11		0.0288	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1307	chr1	94692467	94692468	rs56184400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p22.1	ARHGAP29	rs56184400-G	0.314926	1E-14		0.018726138	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1307	chr1	94721659	94721660	rs12750249	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1p22.1	NR	rs12750249-C	0.256632781737194	4E-6	(IGP32)	0.165	[0.095-0.235] unit decrease	Illumina [~ 2500000] (imputed)	N
1307	chr1	94730953	94730954	rs17396055	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p22.1	ARHGAP29	rs17396055-A	0.3283	6E-11		0.1727	[0.12-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1308	chr1	94874520	94874521	rs6681849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p21.3	RP11-366L18.1	rs6681849-T	0.421825	1E-44		0.03183141	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr1	94874520	94874521	rs6681849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p21.3	RP11-366L18.1	rs6681849-T	0.4216	1E-18		0.0322817	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1308	chr1	94876927	94876928	rs4477285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p21.3		rs4477285-A	NR	5E-18		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1308	chr1	94876927	94876928	rs4477285	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p21.3		rs4477285-G	0.579	3E-11				Affymetrix [10369434] (imputed)	N
1308	chr1	94876927	94876928	rs4477285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p21.3	RP11-366L18.1	rs4477285-A	0.421345	1E-13		0.016871065	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr1	94876927	94876928	rs4477285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.3	NR	rs4477285-A	0.426157	4E-24				Affymetrix, Illumina [24588908] (imputed)	N
1308	chr1	94876927	94876928	rs4477285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p21.3	NR	rs4477285-A	0.421554	6E-23		0.018284	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1310	chr1	95029580	95029581	rs1146509	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.3	NR	rs1146509-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1310	chr1	95048849	95048850	rs191015772	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	1p21.3	F3, LINC01057	rs191015772-C	0.004	4E-7		1.808	[1.437-2.275]	Affymetrix [28509962] (imputed)	N
1310	chr1	95052475	95052476	rs2022309	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	D-dimer levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1p21.3	F3	rs2022309-T	0.233	2E-13		0.092	[0.067-0.117] unit increase	Affymetrix [up to 12642786] (imputed)	N
1310	chr1	95052475	95052476	rs2022309	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1p21.3	F3	rs2022309-G	0.701	4E-8	(D-dimer)	0.244	[0.16-0.33] unit decrease	Illumina [NR] (imputed)	N
1310	chr1	95053205	95053206	rs61774002	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	1p21.3		rs61774002-A	0.016	3E-21		0.3443	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1310	chr1	95053352	95053353	rs12029080	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1p21.3	F3	rs12029080-G	0.31	6E-52		10.4	[6.6-14.3] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1310	chr1	95070040	95070041	rs7542900	22238593	Palmer ND	2012-01-04	PLoS One	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	1p21.3	SLC44A3, F3	rs7542900-C	0.56	6E-6		1.16	[1.09-1.25]	Affymetrix [832357]	N
1310	chr1	95073155	95073156	rs11165182	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	1p21.3	NR	rs11165182-?	NR	5E-6		0.2559	unit decrease	Affymetrix, Illumina [up to 1078289] (imputed)	N
1310	chr1	95073266	95073267	rs1245485	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	1p21.3		rs1245485-A	0.84	1E-13		0.1004	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1310	chr1	95074454	95074455	rs1245489	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	1p21.3	SLC44A3, AS1	rs1245489-?	NR	2E-6				Illumina [540916] (imputed)	N
1310	chr1	95081444	95081445	rs4474258	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	1p21.3	LOC100130235	rs4474258-A	0.43	5E-6	(Recessive)	1.89	[1.29-2.75]	Illumina [555600]	N
1310	chr1	95086756	95086757	rs1388113944	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	1p21.3		rs1388113944-A	0.5792	3E-6		0.0534	[0.031-0.076] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1310	chr1	95086814	95086815	rs947385	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	1p21.3		rs947385-A	0.83	1E-30		0.139	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1310	chr1	95136360	95136361	rs12132193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.3	NR	rs12132193-T	0.898922	2E-10		0.150795	[0.1-0.2] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1311	chr1	95237527	95237528	rs11578225	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	1p21.3	SLC44A3	rs11578225-?	0.2141	6E-13		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1311	chr1	95249305	95249306	rs12743267	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p21.3	SLC44A3	rs12743267-C	0.765129	1E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1311	chr1	95250559	95250560	rs7521392	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	1p21.3	LINC01057	rs7521392-?	NR	1E-10		0.03832	[0.027-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1311	chr1	95268008	95268009	rs11589759	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	1p21.3		rs11589759-T	0.62	5E-90		0.1789	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1312	chr1	95334186	95334187	rs17520351	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	1p21.3	SLC44A3	rs17520351-C		4E-6		0.2	[0.12-0.29] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1312	chr1	95387207	95387208	rs860873	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking behaviour (cigarettes smoked per day)	4,772 European ancestry individuals	NA	1p21.3		rs860873-A	0.47	4E-8		0.106	[0.069-0.143] increase	Illumina [9622178] (imputed)	N
1312	chr1	95387207	95387208	rs860873	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1p21.3	CNN3	rs860873-A	NR	2E-14		0.1472	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1312	chr1	95409857	95409858	rs12137024	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (HISDEG.PWY..L.histidine.degradation.I)	7,738 European ancestry individuals	NA	1p21.3		rs12137024-G	0.830700852879005	4E-8		0.118929006	[0.077-0.161] unit increase	Illumina [5584686] (imputed)	N
1313	chr1	95440870	95440871	rs7539517	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p21.3	NR	rs7539517-?	NR	4E-8				Affymetrix [NR]	N
1313	chr1	95485824	95485825	rs2391388	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		1p21.3	TMEM56, ALG14, RWDD3, CNN3	rs2391388-C	0.451	3E-11		0.178	[0.125-0.23] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1313	chr1	95502113	95502114	rs12749980	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	1p21.3	NR	rs12749980-?	NR	2E-6		0.2132	[0.13-0.3] unit decrease	Illumina [at least 560000] (imputed)	N
1313	chr1	95515636	95515637	rs6675668	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1p21.3	TMEM56, ALG14	rs6675668-T	0.49	2E-18		0.1651	[0.128-0.202] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1313	chr1	95549535	95549536	rs9437689	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	1p21.3	ALG14	rs9437689-?	NR	5E-8	(proportions)	0.7	[NR] % increase	Illumina [NR] (imputed)	N
1313	chr1	95549912	95549913	rs9437813	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	1p21.3		rs9437813-T	NR	1E-12		0.07677	[0.056-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1314	chr1	95560381	95560382	rs12569038	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	1p21.3		rs12569038-C	NR	2E-12		0.0764296	[0.055-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1314	chr1	95578206	95578207	rs12563424	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs12563424-?	NR	3E-8				NR [2625067]	N
1314	chr1	95578206	95578207	rs12563424	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	20,352 bipolar disorder cases, 4,819 Tourette's syndrome cases	NA			rs12563424-?	NR	3E-8		0.0213	NR unit increase	NR [6254473] (imputed)	N
1314	chr1	95578206	95578207	rs12563424	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		TMEM56	rs12563424-T	0.6421	1E-8		0.06371661	[0.042-0.086] unit decrease	NR [NR]	N
1314	chr1	95586772	95586773	rs1023330	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1p21.3	NR	rs1023330-?		9E-9				NR [8377093]	N
1314	chr1	95586772	95586773	rs1023330	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	1p21.3	NR	rs1023330-?		2E-8				NR [520857]	N
1314	chr1	95595952	95595953	rs12753865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p21.3	TMEM56, TMEM56-RWDD3, RP11-57H12.2	rs12753865-C	0.082687	8E-18		0.034798756	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1314	chr1	95608332	95608333	rs72966520	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1p21.3	ALG14, TMEM56, TMEM56-RWDD3	rs72966520-C	0.9361	6E-7		1.1261388		NR [9372253] (imputed)	N
1314	chr1	95627153	95627154	rs186555016	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	1p21.3	TMEM56	rs186555016-C	0.025	5E-7	(Antiinflammatory preparations, non-steroids for topical use [M02AA])	2.86		Illumina [16500000] (imputed)	N
1315	chr1	95692309	95692310	rs1414896	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	1p21.3	intergenic	rs1414896-G	0.40	2E-6		0.26	[NR] unit increase	Illumina [324623]	N
1315	chr1	95697528	95697529	rs6671200	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1p21.3	RWDD3	rs6671200-A	NR	2E-15		0.2461	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1315	chr1	95701223	95701223	rs201738837	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p21.3	RWDD3, TMEM56-RWDD3	rs201738837-CT	0.0802	4E-9		0.03873772	[0.026-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1315	chr1	95730587	95730588	rs3886141	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	1p21.3	RWDD3	rs3886141-C	0.409	2E-8		0.0145	[0.0094-0.0196] unit decrease	Illumina [~ 250000] (imputed)	N
1315	chr1	95742150	95742151	rs61771785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.3	NR	rs61771785-C	0.883619	5E-10		0.12983	[0.089-0.171] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1315	chr1	95781753	95781754	rs12125618	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	1p21.3		rs12125618-?	NR	4E-7				Affymetrix [11524071] (imputed)	N
1315	chr1	95783036	95783037	rs2893323	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p21.3	RWDD3	rs2893323-A		1E-8		0.0052	[0.0034-0.007] unit increase	Affymetrix [13304133] (imputed)	N
1315	chr1	95802418	95802419	rs71654438	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p21.3		rs71654438-?	NR	7E-6		1.1592612	[1.08689649623485-1.23644387562024]	Illumina [up to 7827597] (imputed)	N
1316	chr1	95837583	95837584	rs76041397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p21.3		rs76041397-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1316	chr1	95844406	95844407	rs11165411	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena sp000364245 abundance in stool	5,959 Finnish ancestry individuals	NA	1p21.3		rs11165411-A	0.381833	2E-8		0.0349985	[0.023-0.047] unit decrease	Illumina [7980478] (imputed)	N
1316	chr1	95921696	95921697	rs2391672	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p21.3	NR	rs2391672-A	NR	2E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1316	chr1	95929306	95929307	rs6702412	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p21.3	RWDD3	rs6702412-T	0.4517	7E-9		0.00984452	[0.0065-0.0132] unit increase	Affymetrix [11880941] (imputed)	N
1317	chr1	95969113	95969114	rs71654444	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p21.3		rs71654444-A	NR	1E-9		1.2654197	[1.17317205758142-1.36492085154546]	Illumina [up to 7827597] (imputed)	N
1317	chr1	95989136	95989137	rs6593661	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1p21.3	LOC100996635	rs6593661-C	0.1367	2E-6		0.0105	[0.0062-0.0148] unit increase	Affymetrix [~ 7740000] (imputed)	N
1317	chr1	95989136	95989137	rs6593661	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1p21.3	LOC100996635	rs6593661-A	0.8642	1E-6		0.0104	[0.0063-0.0145] unit increase	Affymetrix [~ 7740000] (imputed)	N
1317	chr1	95989977	95989978	rs12566519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.3	NR	rs12566519-T	0.883226	8E-11		0.144551	[0.1-0.19] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1317	chr1	96025545	96025546	rs1396626	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	1p21.3	NR	rs1396626-?	0.51	3E-6	(African American, recessive)	1.724138	[1.37-2.17]	Affymetrix [NR]	N
1317	chr1	96043009	96043010	rs631130	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p21.3	NR	rs631130-?		5E-9		0.0138158	[0.0092-0.0184] unit decrease	Affymetrix [19400418] (imputed)	N
1317	chr1	96043009	96043010	rs631130	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p21.3	NR	rs631130-?		4E-9		0.013109	[0.0087-0.0175] unit increase	Affymetrix [19400418] (imputed)	N
1318	chr1	96089730	96089731	rs1858111	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	1p21.3	RWDD3	rs1858111-G	0.567	4E-14		0.039	[0.029-0.05] unit decrease	Illumina [7428049] (imputed)	N
1318	chr1	96145967	96145968	rs6693882	19207018	Kim H	2009-02-01	Pharmacogenomics	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA	1p21.3	NR	rs6693882-?	NR	2E-6	(post-operative pain onset time)			Affymetrix [374975]	N
1318	chr1	96160849	96160850	rs11165468	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p21.3	RP11-286B14.1	rs11165468-C	0.4222	2E-8		0.011548388	[0.0075-0.0156] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1318	chr1	96167509	96167510	rs1931247	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs1931247-A	NR	1E-8		0.017770786	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1318	chr1	96169759	96169760	rs6593680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p21.3		rs6593680-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1318	chr1	96169759	96169760	rs6593680	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs6593680-A	NR	1E-9		0.018170988	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1318	chr1	96170952	96170953	rs1931259	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs1931259-A	NR	6E-9		0.021491887	[0.014-0.029] unit decrease	Affymetrix [NR]	N
1318	chr1	96174911	96174912	rs1931262	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p21.3	LOC100996635	rs1931262-T	0.509156	1E-8		0.0118346	[0.0078-0.0159] unit increase	NR [16516521] (imputed)	N
1318	chr1	96175100	96175101	rs1931263	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p21.3		rs1931263-G	0.51	4E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1318	chr1	96175935	96175936	rs10874938	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p21.3	NR	rs10874938-A	0.472167	3E-16		0.051791046	[0.039-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1318	chr1	96175935	96175936	rs10874938	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1p21.3		rs10874938-?	NR	1E-13				NR [7857346] (imputed)	N
1318	chr1	96175935	96175936	rs10874938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.3	Intergenic	rs10874938-A	0.5103	1E-19	(MTAG)	0.0208	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1318	chr1	96175935	96175936	rs10874938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p21.3	Intergenic	rs10874938-A	0.5103	1E-16		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1318	chr1	96175935	96175936	rs10874938	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs10874938-A	NR	9E-18		0.025716783	[0.02-0.032] unit increase	Affymetrix [NR]	N
1318	chr1	96175935	96175936	rs10874938	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p21.3	RP11-286B14.1	rs10874938-?	NR	3E-9		5.924	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1318	chr1	96184837	96184838	rs11165471	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p21.3		rs11165471-G	0.513	3E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1318	chr1	96187318	96187319	rs1931255	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs1931255-A	NR	1E-8		0.020790411	[0.014-0.028] unit decrease	Affymetrix [NR]	N
1318	chr1	96199656	96199657	rs6668048	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.3	NR	rs6668048-T	NR	4E-15		7.848	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1318	chr1	96202442	96202443	rs12134151	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs12134151-C	0.4992	4E-20	(MTAG)	0.012	[0.0095-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1318	chr1	96202442	96202443	rs12134151	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	1p21.3	Intergenic	rs12134151-?		9E-6				Illumina [301908]	N
1318	chr1	96202442	96202443	rs12134151	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p21.3	NR	rs12134151-C	0.4982	1E-8		0.0126919085	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1319	chr1	96221513	96221514	rs7534501	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p21.3	ENSG00000271252, RP11-286B14.1	rs7534501-A	NR	9E-10		6.12	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1319	chr1	96221652	96221653	rs6690195	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p21.3	RP11-286B14.1, RP11-286B14.2	rs6690195-T	0.4891	4E-14		0.015286503	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1319	chr1	96221652	96221653	rs6690195	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs6690195-T	0.4907	8E-16		0.0113	[0.0086-0.014] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1319	chr1	96247834	96247835	rs10783018	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs10783018-A	0.7931	5E-10	(MTAG)	0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr1	96247834	96247835	rs10783018	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP11-286B14.1	rs10783018-A	NR	4E-8		0.020272553	[0.013-0.028] unit decrease	Affymetrix [NR]	N
1319	chr1	96255064	96255065	rs9285624	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	1p21.3	RWDD3, TMEM56	rs9285624-C	0.09	9E-6	(DWRT-dr)	0.16	[0.089-0.231] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1319	chr1	96273988	96273989	rs10127720	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1p21.3	LOC102723661	rs10127720-C	0.7403	7E-12		0.0116	[0.0083-0.0149] unit increase	Affymetrix [~ 7740000] (imputed)	N
1319	chr1	96274667	96274668	rs4615895	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	1p21.3	TMEM56, RWDD3	rs4615895-G	0.259574	9E-11		0.01705	[0.012-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
1319	chr1	96276197	96276198	rs10747472	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	FLJ31662	rs10747472-C	0.676	8E-6	(EA)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1319	chr1	96276197	96276198	rs10747472	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	FLJ31662	rs10747472-C	0.676	6E-6		0.018	[0.01-0.0252] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1319	chr1	96280455	96280456	rs4472800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p21.3		rs4472800-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1319	chr1	96281779	96281780	rs12760039	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs12760039-T	0.8061	4E-17	(MTAG)	0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr1	96281779	96281780	rs12760039	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.3	TMEM56	rs12760039-?	NR	4E-6	(PC 36:1)	0.1957404	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1319	chr1	96282448	96282449	rs114495530	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs114495530-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1319	chr1	96285384	96285385	rs1342391	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs1342391-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1319	chr1	96289335	96289336	rs182662555	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p21.3	LOC101928219	rs182662555-?	NR	2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1319	chr1	96289733	96289734	rs1361739	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p21.3	NA	rs1361739-A	0.3168	3E-17		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1319	chr1	96308639	96308640	rs34683740	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs34683740-T	0.9292	3E-12	(MTAG)	0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr1	96317397	96317398	rs11165503	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.3		rs11165503-A	0.0877	7E-9		0.1145	[0.076-0.153] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1320	chr1	96341447	96341448	rs79658307	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p21.3	Intergenic	rs79658307-G	0.7608	2E-13		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1320	chr1	96375532	96375533	rs4295919	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p21.3	NR	rs4295919-C	0.232	6E-13		0.00918687	[0.0067-0.0117] unit decrease	NR [9732723] (imputed)	N
1320	chr1	96404461	96404462	rs10159026	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p21.3	NR	rs10159026-C	0.7491	2E-9		0.0273	[0.018-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1320	chr1	96414334	96414335	rs1935571	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1p21.3	NR	rs1935571-G	0.48	7E-10		0.015720382	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1320	chr1	96414334	96414335	rs1935571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p21.3		rs1935571-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1320	chr1	96432793	96432794	rs11165528	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p21.3	RWDD3	rs11165528-T	0.4815	3E-9		0.012844953	[0.0086-0.0171] unit decrease	Affymetrix [11514654] (imputed)	N
1320	chr1	96446808	96446809	rs11165531	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1p21.3	LOC100996635, LOC102723661	rs11165531-G		5E-9		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
1320	chr1	96454976	96454977	rs137858393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs137858393-A	0.9341	2E-11		0.0193	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1321	chr1	96470260	96470261	rs7522677	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p21.3		rs7522677-T	0.2099	8E-9		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1321	chr1	96479374	96479375	rs321232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p21.3		rs321232-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1321	chr1	96484939	96484940	rs635754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs635754-A	0.5809	6E-17		0.0119	[0.0092-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1321	chr1	96484939	96484940	rs635754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs635754-A	0.5809	9E-20	(MTAG)	0.0121	[0.0096-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1321	chr1	96484939	96484940	rs635754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.3	Intergenic	rs635754-A	0.5871	2E-10	(MTAG)	0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1321	chr1	96489211	96489212	rs1073090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs1073090-A	0.1854	2E-8	(MTAG)	0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1321	chr1	96561801	96561801	rs201910565	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	1p21.3	LOC102723661, PTBP2	rs201910565-AT	0.311	4E-8		1.0787487	[NR]	Illumina [9112387] (imputed)	N
1322	chr1	96602384	96602385	rs1222064	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	19,099 ADHD cases, 4,819 Tourette's syndrome cases	NA	1p21.3		rs1222064-?	NR	4E-8		0.0186	NR unit increase	NR [5616739] (imputed)	N
1322	chr1	96602439	96602440	rs1222063	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	1p21.3	NR	rs1222063-?		3E-8				NR [520857]	N
1322	chr1	96602439	96602440	rs1222063	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	1p21.3	NR	rs1222063-?		3E-8				NR [8028859]	N
1322	chr1	96603034	96603035	rs12130426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs12130426-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1322	chr1	96604590	96604591	rs2391734	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p21.3	Intergenic	rs2391734-?		2E-8				NR [6786993] (imputed)	N
1322	chr1	96625496	96625497	rs1222043	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	1p21.3	NR	rs1222043-C	0.036	6E-6		3.41	[2.00-5.80]	Illumina [7261187] (imputed)	N
1322	chr1	96677486	96677487	rs3867313	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.3	NR	rs3867313-?	NR	7E-6		0.0080305	[0.0045-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1322	chr1	96684357	96684358	rs139780566	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	1p21.3		rs139780566-G	0.964246	5E-6		0.0330665	[0.019-0.047] unit decrease	Illumina [13900000] (imputed)	N
1322	chr1	96685665	96685666	rs321586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs321586-T	0.7033	1E-8	(MTAG)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1322	chr1	96689204	96689205	rs35562935	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	1p21.3	NR	rs35562935-A	0.0746	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [10862568] (imputed)	N
1322	chr1	96690249	96690250	rs4498848	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p21.3	NR	rs4498848-G	0.377	9E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1322	chr1	96693877	96693878	rs613614	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	1p21.3		rs613614-?	NR	1E-8				NR [7857346] (imputed)	N
1322	chr1	96693877	96693878	rs613614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.3	Intergenic	rs613614-A	0.6955	3E-9	(MTAG)	0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1322	chr1	96700019	96700020	rs516902	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p21.3	RNU1-130P	rs516902-T	NR	1E-9		6.078	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1322	chr1	96700019	96700020	rs516902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.3	DPYD	rs516902-?	NR	2E-6	(uric acid)	0.18545607	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1322	chr1	96712520	96712521	rs498154	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p21.3	NR	rs498154-G	NR	9E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1323	chr1	96735184	96735185	rs75633108	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	1p21.3	NR	rs75633108-C	0.02	3E-6		1.59	1.31-1.93	NR [at least 8482392] (imputed)	N
1323	chr1	96735184	96735185	rs75633108	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	1p21.3	NR	rs75633108-C	0.02	3E-6		1.59	1.31-1.93	NR [at least 8482392] (imputed)	N
1323	chr1	96741621	96741622	rs561177583	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p21.3	intergenic	rs561177583-A	0.0122601888419802	1E-10	(G_Coprococcus_HB)	1.82629	[1.27-2.38] unit decrease	Illumina [7711310] (imputed)	N
1323	chr1	96760945	96760946	rs80067794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs80067794-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1323	chr1	96800780	96800781	rs12409479	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1p21.3	PTBP2	rs12409479-G	NR	5E-10		0.14	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1323	chr1	96800780	96800781	rs12409479	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1p21.3	PTBP2	rs12409479-G	NR	4E-9				Affymetrix, Illumina [12061510] (imputed)	N
1323	chr1	96800780	96800781	rs12409479	30944420	Liu L	2019-04-03	Int J Obes (Lond)	Identification of a 1p21 independent functional variant for abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	8,736 European ancestry individuals, 1,541 East Asian ancestry individuals, 445 Hispanic ancestry individuals, 847 African-American ancestry individuals	NA	1p21.3	PTBP2	rs12409479-A	NR	7E-10		0.14	[0.10-0.18] SD units increase	Affymetrix, Illumina [12061510] (imputed)	N
1323	chr1	96805997	96805998	rs161982	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.3	DPYD	rs161982-?	NR	5E-6	(uric acid)	0.1774334	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1323	chr1	96857104	96857105	rs326915	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p21.3	NR	rs326915-?	NR	6E-8		5.413	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1324	chr1	96877547	96877548	rs671135	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs671135-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1324	chr1	96878071	96878072	rs12119849	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	1p21.3	NR	rs12119849-G	NR	3E-7		0.01242	[0.0077-0.0171] unit decrease	NR [11010159] (imputed)	N
1324	chr1	96878071	96878072	rs12119849	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	1p21.3	NR	rs12119849-G	NR	4E-11		0.0122562	[0.0086-0.0159] unit decrease	NR [11010159] (imputed)	N
1324	chr1	96878071	96878072	rs12119849	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	1p21.3	NR	rs12119849-G	NR	4E-9	(adjusted for BMI)	0.01074	[0.0072-0.0143] unit decrease	NR [11010159] (imputed)	N
1324	chr1	96882670	96882671	rs505066	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p21.3		rs505066-C	0.714	3E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1324	chr1	96883061	96883062	rs501444	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p21.3	NR	rs501444-A	0.369	3E-8		0.00623312	[0.004-0.0084] unit increase	NR [9732723] (imputed)	N
1324	chr1	96883226	96883227	rs12025137	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	1p21.3		rs12025137-?	NR	8E-10		0.0211	NR unit decrease	NR [4428082] (imputed)	N
1324	chr1	96884005	96884006	rs653958	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p21.3	NR	rs653958-G	0.3714	3E-13		0.018684233	[0.014-0.024] unit increase	Affymetrix [10549349] (imputed)	N
1324	chr1	96884005	96884006	rs653958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.3	NR	rs653958-?	NR	4E-7		0.0088267	[0.0054-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
1324	chr1	96886266	96886267	rs587242	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1p21.3	PTBP2	rs587242-A	0.2435	3E-6	(EA)	0.0432	[0.025-0.061] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1324	chr1	96886266	96886267	rs587242	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p21.3	PTBP2	rs587242-?	NR	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1324	chr1	96886266	96886267	rs587242	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p21.3	PTBP2	rs587242-?	NR	4E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1324	chr1	96886266	96886267	rs587242	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p21.3	PTBP2	rs587242-A	0.246	3E-7	(EA)	0.0235	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1324	chr1	96887369	96887370	rs2968487	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	1p21.3	Intergenic	rs2968487-T	NR	3E-12		0.025	[0.017-0.033] unit increase	Illumina [2013566] (imputed)	N
1324	chr1	96887369	96887370	rs2968487	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p21.3	NA	rs2968487-T	0.2772	8E-22		0.0176	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1324	chr1	96887369	96887370	rs2968487	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p21.3	NA	rs2968487-T	0.2772	8E-22		0.0176	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1324	chr1	96892999	96893000	rs11165623	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p21.3	PTBP2	rs11165623-A	0.4876	6E-6	(EA, women)	0.0196	[0.011-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1324	chr1	96892999	96893000	rs11165623	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p21.3	PTBP2	rs11165623-A	0.4876	5E-9	(EA)	0.0198	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1324	chr1	96892999	96893000	rs11165623	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p21.3	PTBP2	rs11165623-A	0.4851	8E-7	(EA,women)	0.0226	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1324	chr1	96892999	96893000	rs11165623	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p21.3	PTBP2	rs11165623-A	0.4851	3E-10	(EA)	0.0221	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1324	chr1	96895324	96895325	rs553785	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs553785-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1324	chr1	96895324	96895325	rs553785	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p21.3	PTBP2	rs553785-A	0.5048	2E-8		0.012229195	[0.008-0.0165] unit increase	Affymetrix [11514654] (imputed)	N
1324	chr1	96901454	96901455	rs10747478	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	1p21.3	PTBP2	rs10747478-T	0.41	3E-8		1.08	[1.06-1.1]	Affymetrix, Illumina [at least 8111819] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p21.3		rs11165643-T	0.59	4E-16				NR [NR] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p21.3		rs11165643-T	0.59	1E-21		0.014	% increase	NR [NR] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p21.3		rs11165643-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p21.3	NR	rs11165643-C	NR	3E-13		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p21.3	LOC101928241, PTBP2	rs11165643-T	0.58	4E-10		0.016	[0.012-0.02] unit increase	Illumina [6108953] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p21.3	PTBP2	rs11165643-T	0.557	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p21.3	PTBP2	rs11165643-T	0.557	3E-8		0.0177	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p21.3	PTBP2	rs11165643-T	0.557	1E-6	(women)	0.0209	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p21.3	NR	rs11165643-T	0.582999430092825	1E-17		0.023304291	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1324	chr1	96924096	96924097	rs11165643	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	PTBP2	rs11165643-T	0.583	6E-9	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1324	chr1	96924096	96924097	rs11165643	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	PTBP2	rs11165643-T	0.583	4E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1324	chr1	96924096	96924097	rs11165643	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	PTBP2	rs11165643-T	0.583	2E-12	(EA)	0.022	[0.016-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1324	chr1	96924096	96924097	rs11165643	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	PTBP2	rs11165643-T	0.574	1E-13		0.022	[0.016-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1324	chr1	96925545	96925559	rs55913960	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Body mass index	2,732 Kuwaiti ancestry individuals	NA	1p21.3	EEF1A1P11, NDUFS5P2	rs55913960-?	NR	3E-7		5.111	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1324	chr1	96928272	96928273	rs1931175	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p21.3	PTBP2	rs1931175-G		5E-13		0.0062	[0.0044-0.008] unit increase	Affymetrix [13304133] (imputed)	N
1324	chr1	96934860	96934861	rs12755914	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs anorexia nervosa (ordinary least squares (OLS))	19,099 ADHD cases, 16,992 anorexia nervosa cases	NA	1p21.3		rs12755914-?	NR	7E-9		0.0206	NR unit increase	NR [5496413] (imputed)	N
1324	chr1	96935262	96935263	rs12042392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p21.3		rs12042392-G	NR	2E-15		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1324	chr1	96943993	96943994	rs1973993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p21.3		rs1973993-C	NR	4E-15		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1324	chr1	96943993	96943994	rs1973993	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p21.3	NR	rs1973993-C	0.63	1E-6		2.71	[1.61-3.81] percentage SD increase	Illumina [305846]	N
1324	chr1	96944796	96944797	rs1555543	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1p21.3	PTBP2	rs1555543-C	0.59	4E-10		0.06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1324	chr1	96946252	96946253	rs6679458	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p21.3	PTBP2	rs6679458-G	0.409353	9E-17		0.0115552	[0.0088-0.0143] unit decrease	Affymetrix [12370749]	N
1324	chr1	96959103	96959104	rs11165655	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p21.3	PTBP2	rs11165655-G	0.4719	5E-13		1.0284985		Affymetrix [11880941] (imputed)	N
1324	chr1	96959103	96959104	rs11165655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p21.3		rs11165655-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1324	chr1	96960982	96960983	rs9437742	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p21.3		rs9437742-C	0.526	4E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1324	chr1	96961267	96961268	rs12030482	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p21.3	NR	rs12030482-A	0.2201	8E-9		1.042	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1324	chr1	96978960	96978961	rs2391769	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	1p21.3	NR	rs2391769-?		4E-8				NR [8028859]	N
1324	chr1	96978960	96978961	rs2391769	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1p21.3	Intergenic	rs2391769-?		8E-9				NR [6786993] (imputed)	N
1324	chr1	96978960	96978961	rs2391769	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	1p21.3	Intergenic	rs2391769-G	0.631	5E-7		1.0695187	[NR]	Illumina [9112387] (imputed)	N
1324	chr1	96978960	96978961	rs2391769	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	1p21.3	intergenic	rs2391769-G	NR	3E-8		1.0638298	[1.04-1.09]	NR [5009020] (imputed)	N
1324	chr1	96978960	96978961	rs2391769	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	1p21.3	intergenic	rs2391769-A	NR	5E-7		1.013	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1324	chr1	96984463	96984464	rs1780100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs1780100-A	0.8539	2E-8	(MTAG)	0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1324	chr1	96985038	96985039	rs2256459	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p21.3	PTBP2	rs2256459-A	0.7847	5E-13		0.0148723	[0.011-0.019] unit increase	Affymetrix [11880941] (imputed)	N
1324	chr1	96990580	96990581	rs6686005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs6686005-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1325	chr1	97000956	97000957	rs6671342	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	1p21.3	Intergenic	rs6671342-T	NR	2E-8		0.023	[0.015-0.031] unit decrease	Illumina [2013566] (imputed)	N
1325	chr1	97037082	97037083	rs10783050	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1p21.3	NR	rs10783050-C	0.36	4E-6		2.6	[1.50-3.70] % SD increase	Illumina [305846]	N
1325	chr1	97082531	97082532	rs2104449	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p21.3	NR	rs2104449-T	NR	1E-6	(EA)	0.1165	[0.069-0.164] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1325	chr1	97099040	97099041	rs61789318	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	1p21.3		rs61789318-?	NR	2E-8				NR [7857346] (imputed)	N
1325	chr1	97099040	97099041	rs61789318	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.3	RPL7P9	rs61789318-?	NR	2E-8		0.0098512	[0.0064-0.0133] unit increase	Affymetrix [805426] (imputed)	N
1325	chr1	97099766	97099767	rs11165687	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p21.3	PTBP2	rs11165687-C	0.590832	1E-8		0.00813348	[0.0053-0.0109] unit decrease	Affymetrix [12370749]	N
1325	chr1	97099766	97099767	rs11165687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs11165687-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1325	chr1	97113914	97113915	rs12071951	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	1p21.3	PTBP2	rs12071951-?	NR	5E-7		1.14	[NR]	Affymetrix [745006]	N
1325	chr1	97122383	97122384	rs1146566	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p21.3	PTBP2	rs1146566-A	0.227342	7E-8		0.0132665	[0.0084-0.0181] unit increase	NR [16516521] (imputed)	N
1326	chr1	97136583	97136584	rs2021638	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1p21.3	PTBP2	rs2021638-T	0.8229	3E-8		0.017110763	[0.011-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1326	chr1	97164342	97164343	rs7544736	19571811	Purcell SM	2009-07-01	Nature	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	1p21.3	PTBP2	rs7544736-G	0.18	6E-7		1.25		Affymetrix [739995]	N
1326	chr1	97171810	97171811	rs6702938	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p21.3		rs6702938-A	0.33	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1326	chr1	97173905	97173906	rs12031518	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p21.3	NR	rs12031518-?	NR	6E-11		1.0726161	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1326	chr1	97187173	97187174	rs3748784	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1p21.3	PTBP2	rs3748784-G	NR	2E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix [9304965] (imputed)	N
1326	chr1	97204290	97204291	rs2088252	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1p21.3	NR	rs2088252-A	NR	1E-6	(EA)	0.1162	[0.069-0.163] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1327	chr1	97265691	97265692	rs720090	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	1p21.3		rs720090-?	NR	2E-8		0.014	NR unit decrease	NR [5460735] (imputed)	N
1327	chr1	97283537	97283538	rs61786416	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.3	PTBP2	rs61786416-?	NR	2E-8		0.0098016	[0.0064-0.0132] unit increase	Affymetrix [805426] (imputed)	N
1327	chr1	97287614	97287615	rs12066944	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs12066944-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1327	chr1	97375843	97375844	rs76620758	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	1p21.3	NR	rs76620758-?	NR	2E-6	(EA)	0.6556	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1328	chr1	97392784	97392785	rs2932317	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.3		rs2932317-T	0.8279	8E-9		0.0876	[0.058-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1328	chr1	97431051	97431052	rs995258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p21.3		rs995258-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1328	chr1	97442228	97442229	rs3002271	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	DPYD	rs3002271-A	0.566	2E-6		0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1328	chr1	97442228	97442229	rs3002271	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p21.3	DPYD	rs3002271-A	0.565	4E-6	(EA)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1328	chr1	97447182	97447183	rs10493889	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.3	NR	rs10493889-?	NR	4E-7		0.0088073	[0.0054-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1328	chr1	97447957	97447958	rs111678902	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p21.3	DPYD	rs111678902-A	0.0160142616756159	1E-6	(O_Clostridiales_RNT)	0.45913	[0.28-0.64] unit increase	Illumina [7711310] (imputed)	N
1329	chr1	97526731	97526732	rs290857	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	1p21.3	PTBP2, DPYD, DPYD-AS1	rs290857-T	0.235711	5E-10		0.006725	[0.0046-0.0088] unit decrease	NR [NR] (imputed)	N
1329	chr1	97583855	97583856	rs72965835	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p21.3	DPYD, DPYD-AS1	rs72965835-T	0.962	7E-6		0.1011	[0.057-0.145] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1329	chr1	97598099	97598100	rs12139650	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p21.3		rs12139650-T	0.8131	2E-8		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1329	chr1	97600038	97600039	rs12047910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p21.3		rs12047910-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1329	chr1	97602993	97602994	rs1760217	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p21.3	DPYD	rs1760217-A	0.7981	2E-11		0.0141847	[0.01-0.018] unit increase	Affymetrix [11880941] (imputed)	N
1330	chr1	97727082	97727083	rs693680	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p21.3	NR	rs693680-?	NR	2E-8				Illumina [7760689] (imputed)	N
1330	chr1	97733433	97733434	rs12753487	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	1p21.3	DPYD-AS1	rs12753487-?	NR	3E-6		1.75	[NR]	Illumina [688067]	N
1330	chr1	97735666	97735667	rs1520668	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p21.3	DPYD	rs1520668-C	NR	7E-6		0.47599405	[0.22-0.73] unit decrease	Illumina [> 6200000] (imputed)	N
1330	chr1	97753314	97753315	rs373814370	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p21.3		rs373814370-?	NR	2E-6		1.1747776	[1.09901232323528-1.25576618817598]	Illumina [up to 7827597] (imputed)	N
1330	chr1	97764904	97764905	rs28552810	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p21.3	NR	rs28552810-A	0.225	4E-9		0.00771947	[0.0051-0.0103] unit decrease	NR [9732723] (imputed)	N
1331	chr1	97802623	97802624	rs36025579	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p21.3	DPYD	rs36025579-G	NR	2E-6		1.049318	[1.03-1.07]	Illumina [6627481] (imputed)	N
1331	chr1	97802623	97802624	rs36025579	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p21.3	intergenic	rs36025579-G	NR	5E-7		1.0515248	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1331	chr1	97815047	97815048	rs148648822	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p21.3	NR	rs148648822-?		4E-9		0.017551	[0.012-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
1331	chr1	97819666	97819667	rs11165846	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	1p21.3	DPYD	rs11165846-?	NR	9E-6				Illumina [874956]	N
1331	chr1	97822768	97822769	rs6685859	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p21.3	DPYD	rs6685859-?	NR	1E-9		0.012283642	[0.0083-0.0163] unit increase	NR [7306098]	N
1331	chr1	97834524	97834525	rs76869799	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p21.3	NR	rs76869799-G	NR	1E-7		1.1764705	[NR]	Illumina [7158791] (imputed)	N
1331	chr1	97854532	97854533	rs12047563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs12047563-A	0.2083	2E-9	(MTAG)	0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr1	97878067	97878068	rs11165867	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1p21.3	DPYD, DPYD-AS1	rs11165867-?	NR	4E-8		1.0718113	[1.05-1.10]	Illumina [8000000] (imputed)	N
1331	chr1	97878442	97878443	rs6663751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs6663751-A	0.1334	4E-8	(MTAG)	0.0144	[0.0093-0.0195] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr1	97884057	97884058	rs140281723	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	1p21.3	DPYD, DPYD-IT1	rs140281723-?		2E-9				Illumina [9499600] (imputed)	N
1331	chr1	97902589	97902590	rs11165872	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	1p21.3		rs11165872-?	NR	4E-8		0.0165	NR unit decrease	NR [4484088] (imputed)	N
1332	chr1	97990335	97990336	rs6685658	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	1p21.3	NR	rs6685658-C	0.9	8E-6	(AA)	5.57	[3.22-7.92] bpm decrease	Illumina [at least 1100000] (imputed)	N
1332	chr1	98039436	98039437	rs61622928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.3	NR	rs61622928-T	0.01045	6E-18	(IGKV4-1)	0.1093	NR unit increase	Illumina [1671387] (imputed)	N
1332	chr1	98039436	98039437	rs61622928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.3	NR	rs61622928-T	0.01045	5E-12	(IGHG1)	7.378	NR unit increase	Illumina [1671387] (imputed)	N
1332	chr1	98039436	98039437	rs61622928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.3	NR	rs61622928-T	0.01045	1E-8	(IGKC)	2.905	NR unit increase	Illumina [1671387] (imputed)	N
1332	chr1	98039436	98039437	rs61622928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.3	NR	rs61622928-T	0.01045	1E-11	(CP)	0.3811	NR unit increase	Illumina [1671387] (imputed)	N
1333	chr1	98074065	98074066	rs114904431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	1p21.3		rs114904431-T	NR	9E-9		0.2119	[0.14-0.28] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1333	chr1	98152124	98152125	rs187785463	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	1p21.3	DPYD	rs187785463-G	0.9261	7E-6		2.0263424	[1.72-2.33]	Illumina [10736316] (imputed)	N
1333	chr1	98161710	98161710	rs111924138	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p21.3	DPYD	rs111924138-G	0.93336	2E-12	(uracil)	0.324	[0.23-0.41] unit decrease	Illumina [13039987] (imputed)	N
1334	chr1	98209109	98209110	rs17378539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs17378539-T	0.8327	1E-8	(MTAG)	0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1334	chr1	98268136	98268137	rs6703307	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	1p21.3	NR	rs6703307-?	NR	2E-6				Illumina [NR]	N
1334	chr1	98288580	98288581	rs78164635	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p21.3	NR	rs78164635-T	0.0805169	4E-10		0.072385654	[0.05-0.095] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1334	chr1	98288580	98288581	rs78164635	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p21.3	Intergenic	rs78164635-T	0.9236	3E-10		0.034	[0.023-0.045] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1334	chr1	98288580	98288581	rs78164635	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	DPYD	rs78164635-T	NR	1E-8		0.032896135	[0.022-0.044] unit decrease	Affymetrix [NR]	N
1334	chr1	98299474	98299475	rs10747488	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	1p21.3	DPYD	rs10747488-A	0.2339	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
1335	chr1	98304156	98304157	rs7552188	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	1p21.3	DPYD	rs7552188-T	NR	2E-10		1.0444599	[1.0308-1.058]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1335	chr1	98305393	98305394	rs7526108	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	1p21.3	DPYD	rs7526108-G	NR	4E-9		0.0089982	[0.006-0.012] unit increase	Affymetrix [18485882] (imputed)	N
1335	chr1	98310238	98310239	rs61787782	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	1p21.3	NR	rs61787782-A	0.78	8E-10		0.96		NR [8546065] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p21.3		rs12072739-G	NR	5E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1p21.3		rs12072739-G	0.23	2E-13		0.017	mmol/L increase	NR [NR] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p21.3		rs12072739-G	0.23	6E-9				NR [NR] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1p21.3		rs12072739-G	0.23	5E-6		0.01	mmol/L decrease	NR [NR] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p21.3		rs12072739-G	0.23	7E-16		0.014	% increase	NR [NR] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p21.3	DPYD	rs12072739-A	0.77558	2E-12		0.0115866	[0.0084-0.0148] unit decrease	Affymetrix [12370749]	N
1335	chr1	98315892	98315893	rs12072739	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p21.3	NR	rs12072739-G	0.2251	1E-9		0.018090144	[0.012-0.024] unit increase	Affymetrix [10549349] (imputed)	N
1335	chr1	98315892	98315893	rs12072739	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p21.3	NA	rs12072739-A	0.7762	2E-13		0.0169	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr1	98322378	98322379	rs4379706	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p21.3	NA	rs4379706-T	0.7895	4E-13		0.0146	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr1	98327132	98327133	rs75641275	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p21.3	NR	rs75641275-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1335	chr1	98327132	98327133	rs75641275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p21.3		rs75641275-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1335	chr1	98327132	98327133	rs75641275	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	1p21.3	DPYD	rs75641275-A	0.859	2E-10		0.042	[0.028-0.056] SD units increase	NR [9926106] (imputed)	N
1335	chr1	98330438	98330439	rs76586805	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p21.3	DPYD	rs76586805-C	0.1067	6E-9		0.01975217	[0.013-0.026] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1335	chr1	98330438	98330439	rs76586805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs76586805-T	0.9093	1E-15	(MTAG)	0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr1	98330438	98330439	rs76586805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p21.3	Intergenic	rs76586805-T	0.9093	6E-13		0.0245	[0.018-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr1	98330438	98330439	rs76586805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs76586805-T	0.9091	5E-18	(MTAG)	0.0248	[0.019-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr1	98340138	98340139	rs17379561	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p21.3	NR	rs17379561-?		1E-16		0.0254838	[0.019-0.032] unit decrease	Affymetrix [19400418] (imputed)	N
1335	chr1	98340138	98340139	rs17379561	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	1p21.3	NR	rs17379561-?		2E-8		0.0177516	[0.012-0.024] unit decrease	Affymetrix [19400418] (imputed)	N
1335	chr1	98348884	98348885	rs1801265	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p21.3	DPYD	rs1801265-G	0.23340000000000005	9E-10		0.0127	[0.0086-0.0168] unit increase	Illumina [246328]	N
1335	chr1	98371448	98371449	rs4394694	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p21.3	DPYD	rs4394694-A	0.236	6E-6		0.034	[0.018-0.05] unit increase	Affymetrix [7947838] (imputed)	N
1335	chr1	98375447	98375448	rs11165924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p21.3		rs11165924-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1335	chr1	98375447	98375448	rs11165924	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p21.3	DPYD	rs11165924-A	0.69	2E-9		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1335	chr1	98378785	98378786	rs9662870	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1p21.3	DPYD	rs9662870-?	NR	9E-9		0.0179	[0.012-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1335	chr1	98395880	98395881	rs4378243	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p21.3	NR	rs4378243-T	0.8271	1E-9		0.017930204	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1335	chr1	98398618	98398619	rs4271249	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1p21.3	SNX7	rs4271249-T	0.591	2E-8		0.0067	[0.0043-0.0091] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1335	chr1	98398618	98398619	rs4271249	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p21.3	DPYD	rs4271249-T	NR	3E-10	(EA)	1.074	[1.05-1.1]	Illumina [6627481] (imputed)	N
1335	chr1	98399714	98399715	rs12741167	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p21.3	intergenic	rs12741167-A	NR	3E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1335	chr1	98399902	98399903	rs10875120	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p21.3	NR	rs10875120-T	0.7827	3E-11		0.0142	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr1	98404095	98404096	rs61789073	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p21.3	DPYD, MIR137, MIR137HG, MIR2682	rs61789073-T		2E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [NR]	N
1335	chr1	98404233	98404234	rs4506495	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p21.3	NR	rs4506495-T	0.834222	5E-9		0.0164866	[0.011-0.022] unit decrease	NR [NR]	N
1335	chr1	98404233	98404234	rs4506495	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p21.3	RP11-272L13.3	rs4506495-C	0.1705	4E-10		0.017181229	[0.012-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1335	chr1	98404233	98404234	rs4506495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs4506495-T	0.8361	6E-20	(conditional-joint)	0.0174	[0.014-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr1	98412712	98412713	rs187951956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs187951956-A	0.0154	5E-8		0.0315	[0.02-0.043] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr1	98417445	98417446	rs10875121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p21.3		rs10875121-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1335	chr1	98417445	98417446	rs10875121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs10875121-C	0.8361	4E-20		0.0174	[0.014-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr1	98417445	98417446	rs10875121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs10875121-C	0.8361	5E-19	(MTAG)	0.0158	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr1	98417966	98417967	rs11165934	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p21.3	NR	rs11165934-C	0.225646	3E-10		0.053002093	[0.037-0.069] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1335	chr1	98418686	98418687	rs6664489	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p21.3	DPYD	rs6664489-G	0.219987	5E-11		0.0145766	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
1335	chr1	98423148	98423149	rs9659380	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p21.3	NA	rs9659380-A	0.8372	5E-14		0.0179	[0.013-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr1	98427843	98427844	rs150866558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p21.3		rs150866558-C	NR	1E-9		0.0217	[0.015-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1336	chr1	98435543	98435544	rs6703588	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	1p21.3	NR	rs6703588-A	0.2226	4E-8		5.49	z score decrease	NR [10847151] (imputed)	N
1336	chr1	98445829	98445830	rs80289781	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p21.3	MIR137HG	rs80289781-?	NR	1E-21		0.026779253	[0.021-0.032] unit decrease	NR [7306098]	N
1336	chr1	98456906	98456907	rs4573558	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p21.3		rs4573558-A	0.16	2E-13		7.34	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr1	98461131	98461132	rs9324380	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.3	NR	rs9324380-C	NR	3E-8		5.573	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr1	98461131	98461132	rs9324380	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	MIR137HG	rs9324380-C	NR	2E-9		0.026789311	[0.018-0.036] unit increase	Affymetrix [NR]	N
1336	chr1	98471701	98471702	rs77177281	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.3	NR	rs77177281-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1336	chr1	98475521	98475522	rs2154402	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p21.3		rs2154402-T	0.1045	2E-7		36.760254	z score increase	NR [6814003]	N
1336	chr1	98478980	98478981	rs1938566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p21.3	DPYD	rs1938566-C	0.165464	2E-15		0.0213189	[0.016-0.027] unit increase	Affymetrix [NR] (imputed)	N
1336	chr1	98480211	98480212	rs11165944	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p21.3		rs11165944-T	0.35	1E-18		8.82	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr1	98480211	98480212	rs11165944	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p21.3	NR	rs11165944-T	0.3322	4E-17				NR [9056863] (imputed)	N
1336	chr1	98487332	98487333	rs9659624	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	1p21.3		rs9659624-?	NR	8E-14		0.0257	NR unit increase	NR [4428082] (imputed)	N
1336	chr1	98489277	98489277	rs142603792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1p21.3		rs142603792-ATACTT	NR	3E-11		0.0201	[0.014-0.026] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1336	chr1	98497175	98497176	rs1198572	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	1p21.3		rs1198572-?	NR	6E-11		0.0216	NR unit increase	NR [4425810] (imputed)	N
1336	chr1	98498440	98498441	rs11804556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.3	Intergenic	rs11804556-A	0.0765	4E-12	(MTAG)	0.0299	[0.021-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr1	98498440	98498441	rs11804556	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.3	NR	rs11804556-A	NR	5E-10		6.212	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr1	98500044	98500045	rs7554283	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p21.3	NR	rs7554283-C	0.3118	2E-9				NR [9056863] (imputed)	N
1336	chr1	98500648	98500649	rs190925241	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p21.3	NR	rs190925241-?	NR	2E-7		5.178	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1336	chr1	98501983	98501984	rs1702294	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs1702294-?	NR	1E-14				NR [2625067]	N
1336	chr1	98501983	98501984	rs1702294	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		Intergenic	rs1702294-?		3E-16				NR [6786993] (imputed)	N
1336	chr1	98501983	98501984	rs1702294	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs1702294-?	NR	1E-17				Illumina [up to 5582932] (imputed)	N
1336	chr1	98501983	98501984	rs1702294	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		MIR2682	rs1702294-C	NR	1E-17	(EA)	1.126	[1.1-1.15]	Illumina [6627481] (imputed)	N
1336	chr1	98501983	98501984	rs1702294	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		DPYD, MIR137	rs1702294-C	0.809	3E-19		1.1273957	[1.1-1.16]	Affymetrix, Illumina [9005918] (imputed)	N
1336	chr1	98502339	98502340	rs1782810	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1p21.3	DPYD-AS2, DPYD, MIR137, MIR137HG, MIR2682	rs1782810-A		1E-19		1.12	[1.09-1.15]	Affymetrix, Illumina [NR]	N
1336	chr1	98502933	98502934	rs1625579	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1p21.3	DPYD, MIR137	rs1625579-?	0.801	2E-11	(Modelling analysis)			NR [1252901] (imputed)	N
1336	chr1	98502933	98502934	rs1625579	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1p21.3	MIR137	rs1625579-T	0.80	2E-11		1.12	[1.09-1.16]	Affymetrix, Illumina [1252901] (imputed)	N
1336	chr1	98507695	98507696	rs4292998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p21.3		rs4292998-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1336	chr1	98507717	98507718	rs4411173	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	1p21.3	DPYD	rs4411173-A	0.162507	5E-9		5.85	z score increase	NR [~ 10847151] (imputed)	N
1336	chr1	98512126	98512127	rs2660304	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	1p21.3		rs2660304-?	NR	2E-9		0.0141	NR unit increase	NR [4548414] (imputed)	N
1336	chr1	98512126	98512127	rs2660304	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1p21.3	NR	rs2660304-T	0.7893	5E-13		0.09960254	[0.073-0.127] unit increase	NR [NR]	N
1336	chr1	98512126	98512127	rs2660304	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1p21.3	DPYD, MIR137, MIR137HG, MIR2682	rs2660304-?	NR	2E-18		1.1148272	[1.09-1.14]	Illumina [8000000] (imputed)	N
1336	chr1	98512126	98512127	rs2660304	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p21.3	NR	rs2660304-T	NR	1E-17		1.12	[NR]	Illumina [7158791] (imputed)	N
1336	chr1	98520218	98520219	rs2660302	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	1p21.3	MIR137	rs2660302-T	0.187959	5E-10		0.03636245	[0.025-0.048] SD units decrease	NR [9926106] (imputed)	N
1336	chr1	98527950	98527951	rs12567114	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1p21.3	NR	rs12567114-G	0.27833	4E-9		0.046254475	[0.031-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1336	chr1	98527950	98527951	rs12567114	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	1p21.3	DPYD	rs12567114-G	NR	4E-9		1.037		NR [14661600] (imputed)	N
1336	chr1	98527950	98527951	rs12567114	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	1p21.3	NR	rs12567114-A	NR	2E-9		0.846	unit increase	Affymetrix [14661600] (imputed)	N
1336	chr1	98528104	98528105	rs142469003	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p21.3	NR	rs142469003-A	0.0261	2E-10		0.0215525	[0.015-0.028] unit decrease	NR [9732723] (imputed)	N
1336	chr1	98528829	98528830	rs2802532	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip or cleft lip with cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios	NA	1p21.3		rs2802532-C	0.09	2E-8				Illumina [6761961] (imputed)	N
1336	chr1	98536321	98536323	rs145793613	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	1p21.3	NR	rs145793613-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1336	chr1	98544072	98544073	rs116674558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs116674558-A	0.0296	1E-12	(MTAG)	0.0375	[0.027-0.048] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr1	98550410	98550411	rs1198589	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p21.3	LOC10013269	rs1198589-C	NR	8E-14		1.1049724	[1.08-1.13]	Illumina [6627481] (imputed)	N
1336	chr1	98550410	98550411	rs1198589	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p21.3	MIR137	rs1198589-C	NR	1E-13		1.1025358	[1.08-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1336	chr1	98552831	98552832	rs1198588	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1p21.3	NR	rs1198588-?		4E-16				NR [8377093]	N
1336	chr1	98552831	98552832	rs1198588	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	1p21.3	NR	rs1198588-?		4E-16				NR [8377093]	N
1336	chr1	98552831	98552832	rs1198588	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p21.3	NR	rs1198588-?	NR	1E-16		1.1092623	[1.08-1.13]	Affymetrix, Illumina [12447948] (imputed)	N
1336	chr1	98552831	98552832	rs1198588	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	1p21.3	DPYD, MIR137	rs1198588-T	0.786	2E-12		1.1249	[1.09-1.16]	Affymetrix, Illumina [9871789]	N
1336	chr1	98552831	98552832	rs1198588	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	1p21.3	DPYD, has-mir-137	rs1198588-?	NR	5E-7		1.12	[NR]	Affymetrix [745006]	N
1336	chr1	98554208	98554209	rs76286687	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p21.3	Intergenic	rs76286687-G	0.9691	1E-11		0.0384	[0.027-0.049] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1336	chr1	98562259	98562260	rs1198575	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p21.3	NR	rs1198575-?		2E-8		0.0154099	[0.01-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1336	chr1	98562259	98562260	rs1198575	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	1p21.3	NR	rs1198575-?		2E-11		0.0189685	[0.013-0.025] unit increase	Affymetrix [19400418] (imputed)	N
1336	chr1	98562259	98562260	rs1198575	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1p21.3	intergenic	rs1198575-T	0.189	2E-6		0.026	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1337	chr1	98572381	98572382	rs17372140	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1p21.3	NR	rs17372140-A	0.2965	9E-9		0.013975392	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1337	chr1	98578573	98578574	rs978346	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	1p21.3		rs978346-?	NR	3E-9				NR [7857346] (imputed)	N
1337	chr1	98581336	98581337	rs72737821	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	1p21.3	DPYD	rs72737821-A	0.712	4E-8		5.48	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1337	chr1	98581336	98581337	rs72737821	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p21.3	NFU1P2	rs72737821-?	NR	3E-10		6.292	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1337	chr1	98581336	98581337	rs72737821	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p21.3	NFU1P2	rs72737821-?	NR	4E-6		4.595	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1337	chr1	98588884	98588885	rs1473474	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p21.3	NR	rs1473474-T	0.459245	5E-9		0.03673222	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1337	chr1	98588884	98588885	rs1473474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p21.3	Intergenic	rs1473474-T	0.4364	4E-9		0.0169	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1337	chr1	98588884	98588885	rs1473474	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.3	NR	rs1473474-T	NR	1E-8		5.683	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1337	chr1	98589714	98589715	rs1843815	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1p21.3	DPYD, SNX7	rs1843815-T		6E-8		0.0046	[0.0028-0.0064] unit increase	Affymetrix [13304133] (imputed)	N
1337	chr1	98589714	98589715	rs1843815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs1843815-A	0.4735	2E-13	(MTAG)	0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr1	98589714	98589715	rs1843815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs1843815-A	0.4635	4E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1337	chr1	98589714	98589715	rs1843815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs1843815-A	0.4635	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr1	98604200	98604201	rs17381294	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1p21.3	NFU1P2	rs17381294-A	0.2798	8E-10		0.014048634	[0.0096-0.0185] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1337	chr1	98618713	98618714	rs61787263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.3	RP5-1070A16.1	rs61787263-T	NR	5E-10		0.03091618	[0.021-0.041] unit increase	Affymetrix [NR]	N
1337	chr1	98627204	98627205	rs147613212	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.3	Intergenic	rs147613212-A	0.7327	1E-12	(MTAG)	0.0183	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr1	98636198	98636199	rs72737855	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	1p21.3	NR	rs72737855-C	0.06006	3E-7		0.3247	[0.2-0.45] unit increase	Illumina [10677593] (imputed)	N
1337	chr1	98645740	98645741	rs2200583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs2200583-T	0.8206	2E-10	(MTAG)	0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr1	98687690	98687691	rs12129731	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p21.3	NR	rs12129731-T	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1338	chr1	98741749	98741750	rs6664132	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	1p21.3	intergenic	rs6664132-A	0.24	8E-7	(male)	0.103	[0.062-0.144] unit decrease	Illumina [6380737] (imputed)	N
1338	chr1	98752180	98752181	rs112655778	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	1p21.3	DPYD	rs112655778-A	0.0627099318403116	3E-6	(EA)	0.4224	[0.25-0.6] unit decrease	Illumina [at least 988306] (imputed)	N
1338	chr1	98757619	98757620	rs12750688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs12750688-C	0.7553	1E-11	(MTAG)	0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1338	chr1	98757619	98757620	rs12750688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p21.3		rs12750688-C	0.7406	7E-13		0.0116	[0.0085-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1338	chr1	98757619	98757620	rs12750688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.3	Intergenic	rs12750688-C	0.7406	2E-14	(MTAG)	0.0115	[0.0086-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1338	chr1	98766653	98766654	rs145629202	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	1p21.3	SNX7	rs145629202-G	0.061505744888023406	2E-6	(EA)	0.436	[0.26-0.62] unit decrease	Illumina [at least 988306] (imputed)	N
1338	chr1	98818309	98818310	rs72719886	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	1p21.3	NR	rs72719886-?	NR	6E-6	(ACE metric)	1.13337	[0.64-1.62] unit increase	Illumina [5293637] (imputed)	N
1338	chr1	98818715	98818716	rs12727789	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	1p21.3	LOC729987, SNX7	rs12727789-C	0.75	8E-6		1.37		Illumina [8974355] (imputed)	N
1339	chr1	98858524	98858525	rs1526297	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.3	DPYD	rs1526297-?	NR	8E-6	(TAG 52:4)	0.17827089	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1339	chr1	98914634	98914635	rs957984	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	1p21.3	intergenic	rs957984-?	NR	6E-6		0.0085	[0.0048-0.0122] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1339	chr1	98918400	98918401	rs72721860	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p21.3	AL160056.1	rs72721860-T	NR	3E-7		1.0167	[0.63-1.4] unit increase	Illumina [NR] (imputed)	N
1340	chr1	98972805	98972806	rs61787890	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.3		rs61787890-A	0.9359	4E-12		0.1569	[0.11-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1340	chr1	99000161	99000162	rs143221246	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p21.3	SNX7	rs143221246-T	0.978953	3E-8	(-452 ms)	0.116019	[0.075-0.157] unit increase	Affymetrix [10000000] (imputed)	N
1340	chr1	99063001	99063002	rs115578460	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p21.3	SNX7	rs115578460-T	NR	1E-7	(sleep offset)	0.6166	[0.39-0.84] unit increase	Affymetrix [7141204] (imputed)	N
1341	chr1	99092783	99092784	rs6701243	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	1p21.3	Intergenic	rs6701243-A	0.609	1E-6		1.067	[NR]	Illumina [9112387] (imputed)	N
1341	chr1	99115029	99115030	rs11166057	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1p21.3		rs11166057-A	NR	8E-6		1.03479		Affymetrix, Illumina [62056310] (imputed)	N
1341	chr1	99143546	99143547	rs9285630	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1p21.3	SNX7	rs9285630-?	NR	8E-7	(EA)	0.022	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
1341	chr1	99176295	99176296	rs10783100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p21.3	Intergenic	rs10783100-T	0.478	6E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr1	99177252	99177253	rs9727115	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	1p21.3	SNX7	rs9727115-G	0.64	2E-7				Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr1	99188598	99188599	rs56242843	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p21.3	Intergenic	rs56242843-C	0.7086	2E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1341	chr1	99194322	99194323	rs4298759	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	1p21.3	SNX7	rs4298759-?	NR	2E-10				NR [3144808] (imputed)	N
1342	chr1	99256761	99256762	rs12060706	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p21.3	Intergenic	rs12060706-T	0.2806	4E-9	(MTAG)	0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1342	chr1	99275134	99275135	rs11581859	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	1p21.3	SNX7, LPPR5	rs11581859-?	0.218	9E-6	(post-treatment)			Illumina [3017604] (imputed)	N
1342	chr1	99276858	99276859	rs12060257	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	1p21.3	LOC100129620, LPPR5, SNX7	rs12060257-A	0.21	2E-6		0.51	[0.29-0.73] unit increase	Illumina [at least 4710000] (imputed)	N
1342	chr1	99348835	99348836	rs11166135	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1p21.3	LPPR5	rs11166135-?	NR	1E-6	(DMFS3)			Illumina [518997]	N
1343	chr1	99386292	99386293	rs1571500	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	1p21.3	SNX7, PAP2D	rs1571500-?	NR	2E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1343	chr1	99420367	99420368	rs309064	24903457	Kim YK	2014-06-05	BMC Med Genet	Identification of a genetic variant at 2q12.1 associated with blood pressure in East Asians by genome-wide scan including gene-environment interactions.	Blood pressure (anthropometric measures interaction)	7,486 Korean ancestry individuals	4,544 East Asian ancestry individuals	1p21.3	PAP2D	rs309064-C	0.03	2E-6	(DBP)	0.19	[0.11-0.27] unit increase	Affymetrix [1573409] (imputed)	N
1343	chr1	99420367	99420368	rs309064	24903457	Kim YK	2014-06-05	BMC Med Genet	Identification of a genetic variant at 2q12.1 associated with blood pressure in East Asians by genome-wide scan including gene-environment interactions.	Blood pressure	7,486 Korean ancestry individuals	4,544 East Asian ancestry individuals	1p21.3	PAP2D	rs309064-C	0.03	3E-6	(DBP)	29.3	[17.07-41.53] unit decrease	Affymetrix [1573409] (imputed)	N
1343	chr1	99445470	99445471	rs61784651	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	1p21.3	LPPR5	rs61784651-T	0.17	3E-8		1.1	[1.07-1.14]	Affymetrix [28509962] (imputed)	N
1343	chr1	99453286	99453287	rs10443196	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.3	LPPR5	rs10443196-G	0.273	9E-6	(LDL )	0.04	[NR] mg/dL increase	Illumina [899892]	N
1343	chr1	99455930	99455931	rs55646170	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1p21.3	LPPR5	rs55646170-T	0.9199	3E-8		0.02214514	[0.014-0.03] unit decrease	Affymetrix [11514654] (imputed)	N
1343	chr1	99455930	99455931	rs55646170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1p21.3		rs55646170-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1343	chr1	99457765	99457766	rs12042620	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (edema)	1,109 Japanese ancestry female cases, 4,625 Japanese ancestry female controls	1,331 Japanese ancestry female cases, 4,283 Japanese ancestry female controls	1p21.3	NR	rs12042620-C	0.259450726	5E-6		0.1669636	[0.095-0.239] unit increase	Affymetrix [536506]	N
1343	chr1	99463209	99463210	rs79746559	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p21.3	LPPR5, SNX7	rs79746559-A	NR	8E-7	(sleep offset)	0.6146	[0.37-0.86] unit increase	Affymetrix [7141204] (imputed)	N
1343	chr1	99464463	99464464	rs309088	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	1p21.3	NR	rs309088-G	0.681134	3E-8		0.995	[0.993, 0.997]	Affymetrix [39302896] (imputed)	N
1344	chr1	99514553	99514554	rs7519626	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p21.3		rs7519626-C	0.324	1E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1344	chr1	99524046	99524047	rs10747502	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.3	PAP2D	rs10747502-A	0.061	5E-7	(Light activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1344	chr1	99524046	99524047	rs10747502	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1p21.3	LOC100129620	rs10747502-?	0.08	1E-9			[NR]	Affymetrix, Illumina [152234]	N
1344	chr1	99561621	99561622	rs72734413	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	1p21.3	NR	rs72734413-?	NR	7E-6				Illumina [5946283] (imputed)	N
1344	chr1	99589378	99589379	rs303386	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	1p21.3	LOC100129620	rs303386-A	0.429	4E-6	(Dominant model)	2.238	[1.448-3.46]	Illumina [733202]	N
1344	chr1	99589378	99589379	rs303386	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	1p21.3	LOC100129620	rs303386-A	0.444	4E-6	(Dominant)	1.766	[1.256-2.483]	Illumina [733202]	N
1345	chr1	99707753	99707754	rs143083071	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p21.3	Intergenic	rs143083071-A	NR	1E-8	(between families)	5.734	unit increase	Affymetrix [up to 15107142] (imputed)	N
1345	chr1	99712839	99712840	rs71659190	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	1p21.3	PLPPR4	rs71659190-C	0.04	3E-11	(X-11852,  X-21803,  X-24403)	0.015	[0.011-0.019] unit increase	Illumina [7750367] (imputed)	N
1345	chr1	99712839	99712840	rs71659190	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p21.3	PLPPR4	rs71659190-C	0.04	2E-12	(X - 24403)	0.771	[0.56-0.98] unit increase	Illumina [7750367] (imputed)	N
1346	chr1	99748521	99748522	rs712888	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	1p21.3	NR	rs712888-?	NR	5E-6		0.2629	[0.15-0.38] unit decrease	Illumina [at least 560000] (imputed)	N
1346	chr1	99765354	99765355	rs819913	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	1p21.3	LPPR4	rs819913-C	0.01640699999999995	4E-7		1.42	[1.24-1.63]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1346	chr1	99782956	99782957	rs12743824	23213074	Adams LA	2012-12-05	Hepatology	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NA	1p21.2	LPPR4	rs12743824-C	0.441	5E-6		2.3	[-0.05200-4.65200]	Illumina [2078805] (imputed)	N
1347	chr1	99929133	99929134	rs111365677	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	1p21.2	LPPR4, PALMD	rs111365677-?		1E-7		17.54386	[4.33-71.43]	Illumina [~ 12000000] (imputed)	N
1347	chr1	99957041	99957042	rs115092255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p21.2	NR	rs115092255-C	0.999862	2E-12		0.640555	[0.46-0.82] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1347	chr1	99982297	99982298	rs11166257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p21.2		rs11166257-G	NR	1E-20		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1347	chr1	99982297	99982298	rs11166257	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p21.2	MIR548N	rs11166257-T	0.131884	6E-17		0.00621112	[0.0047-0.0077] unit decrease	Affymetrix [13995440] (imputed)	N
1347	chr1	100000011	100000012	rs10875231	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p21.2	NR	rs10875231-?	NR	1E-6		0.0084973	[0.0051-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1348	chr1	100039694	100039695	rs114621605	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p21.2	PALMD	rs114621605-G	0.978228	2E-9		0.0381438	[0.026-0.051] unit increase	NR [13737936] (imputed)	N
1348	chr1	100046245	100046246	rs6702619	29511167	Theriault S	2018-03-07	Nat Commun	A transcriptome-wide association study identifies PALMD as a susceptibility gene for calcific aortic valve stenosis.	Calcific aortic valve stenosis	1,009 French Canadian cases, 1,017 French Canadian controls	1,391 European ancestry cases, 352,195 European ancestry controls	1p21.2	PALMD	rs6702619-T	0.47	2E-14		1.28	[1.20-1.36]	Illumina [7732680] (imputed)	N
1348	chr1	100046245	100046246	rs6702619	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	1p21.2	PALMD	rs6702619-G	0.5	1E-16		0.021	[0.015-0.027] cm increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1348	chr1	100047633	100047634	rs149753617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p21.2		rs149753617-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1348	chr1	100047633	100047634	rs149753617	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p21.2		rs149753617-?	NR	3E-9		0.0430186	[0.029-0.057] unit increase	Affymetrix [20259828] (imputed)	N
1348	chr1	100049647	100049648	rs7543039	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	1p21.2	PALMD	rs7543039-T	0.514	1E-16		1.24	[1.19-1.29]	Affymetrix, Illumina [8000000] (imputed)	N
1348	chr1	100049784	100049785	rs7543130	31387361	Fulmer D	2019-08-07	Circulation	Defects in the Exocyst-Cilia Machinery Cause Bicuspid Aortic Valve Disease and Aortic Stenosis.	Bicuspid aortic valve	452 European ancestry cases, 1,834 European ancestry controls	1,679 cases, 894 controls	1p21.2	PALMD	rs7543130-A	0.4927	2E-8				Illumina [1355128]	N
1348	chr1	100049784	100049785	rs7543130	29511194	Helgadottir A	2018-03-07	Nat Commun	Genome-wide analysis yields new loci associating with aortic valve stenosis.	Aortic valve stenosis	2,457 Icelandic ancestry cases, 349,342 Icelandic ancestry controls (including non-array genotyped, whole genome imputed individuals)	4,850 European ancestry cases, 451,731 European ancestry controls	1p21.2	PALMD	rs7543130-A	0.512	1E-22		1.2	[1.16-1.25]	Illumina [32500000] (imputed)	N
1348	chr1	100049784	100049785	rs7543130	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	1p21.2	PALMD	rs7543130-A	0.49	1E-7		0.03	[0.02-0.04] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1349	chr1	100154642	100154643	rs150035005	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p21.2	NR	rs150035005-T	0.0026	7E-6		2.973	mmHg decrease	Illumina [242296]	N
1349	chr1	100268990	100268991	rs6689305	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	1p21.2	FRRS1, AGL	rs6689305-?	0.19	9E-6				Illumina [565404]	N
1350	chr1	100335976	100335977	rs17121403	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1p21.2	intergenic	rs17121403-?	NR	7E-6	(FEV1 decline in asthmatics)	0.8328	[0.47-1.20] unit decrease	Illumina [~ 2500000] (imputed)	N
1350	chr1	100343253	100343254	rs141043166	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.2	NR	rs141043166-A	0.01045	2E-11	(OAT)	0.06856	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr1	100361924	100361925	rs2230307	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	1p21.2	AGL	rs2230307-?	NR	4E-7	(Multiple-adjusted)			Illumina [32817]	N
1351	chr1	100403274	100403275	rs10783124	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Incident chronic kidney disease	281 Korean ancestry cases, 3,336 Korean ancestry controls	NA	1p21.2	AGL, SLC35A3	rs10783124-G	0.09	1E-6		2.23	[NR]	Affymetrix [up to 1590162] (imputed)	N
1352	chr1	100575932	100575933	rs13375867	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	1p21.2	SASS6	rs13375867-A	0.35	2E-6		0.174	[NR] unit increase	Illumina [625127]	N
1352	chr1	100638800	100638801	rs7528137	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p21.2	LRRC39	rs7528137-?		7E-7				Illumina [4322238] (imputed)	N
1353	chr1	100702215	100702216	rs11166420	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	1p21.2		rs11166420-T	0.0955956	2E-8		0.0376304	[0.024-0.051] unit increase	NR [11722792] (imputed)	N
1353	chr1	100724466	100724467	rs7534220	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1p21.2	DBT, RTCA-AS1	rs7534220-C	0.627826621	1E-6		1.1280495	[1.07-1.18]	Illumina [10439017] (imputed)	N
1353	chr1	100747340	100747341	rs143453921	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	1p21.2	NR	rs143453921-C		5E-6		1.0402	[0.59-1.49] SD units decrease	NR [10700000] (imputed)	N
1353	chr1	100783674	100783675	rs520757	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.2		rs520757-A	0.1773	8E-12		0.0981	[0.07-0.126] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1353	chr1	100783674	100783675	rs520757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.2	NR	rs520757-G	0.221316	1E-9		0.110973	[0.075-0.147] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1353	chr1	100783674	100783675	rs520757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.2	NR	rs520757-G	0.21647	8E-11		0.127525	[0.089-0.166] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1354	chr1	100800091	100800092	rs6676197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p21.2	NR	rs6676197-G	NR	1E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
1354	chr1	100800091	100800092	rs6676197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p21.2	NR	rs6676197-G	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1354	chr1	100808362	100808363	rs11166440	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p21.2	CDC14A	rs11166440-A	0.6026	6E-16		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1354	chr1	100808362	100808363	rs11166440	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p21.2	CDC14A	rs11166440-A	0.6265	4E-13		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1354	chr1	100808362	100808363	rs11166440	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p21.2	CDC14A	rs11166440-G	0.4119	7E-9		5.789	NR z score decrease	Illumina [26237160] (imputed)	N
1354	chr1	100818177	100818178	rs529224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1p21.2		rs529224-C	NR	2E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1354	chr1	100818177	100818178	rs529224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p21.2	NR	rs529224-C	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
1354	chr1	100818727	100818728	rs17420882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p21.2		rs17420882-G	NR	6E-21		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1354	chr1	100818727	100818728	rs17420882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p21.2		rs17420882-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1354	chr1	100823686	100823689	rs200973787	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever and diarrhea in mesalamine-treated irritable bowel disease	49 Japanese ancestry cases, 1,474 Japanese ancestry controls	14 Japanese ancestry cases, 774 Japanese ancestry controls	1p21.2	CDC14A	rs200973787-A	0.0262	4E-7		4.9	[4.29-5.51]	NR [7215020] (imputed)	N
1354	chr1	100829684	100829685	rs114558965	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	1p21.2	CDC14A	rs114558965-A	0.97	1E-9	(African)	4.123	[1.46-6.78] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1354	chr1	100847968	100847969	rs10875289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p21.2		rs10875289-A	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1354	chr1	100847968	100847969	rs10875289	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p21.2	NR	rs10875289-A	NR	1E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1354	chr1	100880327	100880328	rs612683	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p21.2	NR	rs612683-T	0.4047	3E-7	(EA)	0.0327	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
1354	chr1	100894418	100894419	rs6662924	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	1p21.2	CDC14A	rs6662924-A	0.187	3E-10		0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1354	chr1	100924683	100924684	rs481443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1p21.2		rs481443-C	NR	8E-12		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1355	chr1	101049311	101049312	rs1577515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p21.2	RP11-84O12.2	rs1577515-C	0.181503	2E-19		0.02594313	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr1	101067594	101067595	rs139018470	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	1p21.2	LOC100128787	rs139018470-T	0.9549	2E-6	(AA)			Illumina [NR] (imputed)	N
1356	chr1	101095201	101095202	rs12566440	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1p21.2	GPR88, LINC01349	rs12566440-A	NR	2E-18		0.0638	unit decrease	Illumina [15409056] (imputed)	N
1356	chr1	101100178	101100179	rs148843724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	1p21.2		rs148843724-T	NR	2E-9		0.131	[0.088-0.174] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1356	chr1	101100838	101100839	rs60583266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p21.2		rs60583266-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1356	chr1	101106267	101106268	rs11547648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p21.2	NR	rs11547648-T	0.463234	7E-37		0.023714	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1356	chr1	101106533	101106534	rs35883536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p21.2	RP11-84O12.4	rs35883536-A	0.4618	3E-16		0.02917527	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1356	chr1	101115320	101115321	rs12410168	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.2	NR	rs12410168-A	0.44797	2E-37				Affymetrix, Illumina [23467995] (imputed)	N
1356	chr1	101133984	101133985	rs9433740	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p21.2		rs9433740-G	0.474	5E-13				Affymetrix [10369434] (imputed)	N
1356	chr1	101137029	101137030	rs12724990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p21.2		rs12724990-A	0.45801	4E-12		0.015398964	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr1	101137029	101137030	rs12724990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p21.2		rs12724990-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1356	chr1	101143083	101143084	rs71660930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p21.2		rs71660930-A	NR	9E-20		0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1356	chr1	101143083	101143084	rs71660930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p21.2	intergenic	rs71660930-A	0.481162	3E-30		0.025625143	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr1	101147148	101147149	rs12741113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p21.2	NR	rs12741113-C	0.44728	6E-11		0.014542335	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr1	101147148	101147149	rs12741113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2		rs12741113-C	0.447291	3E-13		0.016305296	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr1	101203697	101203698	rs3176878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2	VCAM1	rs3176878-T	0.160445	1E-9		0.018559912	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr1	101203697	101203698	rs3176878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	VCAM1	rs3176878-T	0.160432	3E-13		0.02222838	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr1	101206682	101206683	rs12732056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p21.2	VCAM1	rs12732056-T	0.163349	6E-9		0.017587014	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr1	101221481	101221482	rs6696259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p21.2	NR	rs6696259-C	0.409656	4E-17		0.01885224	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr1	101221481	101221482	rs6696259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p21.2	NR	rs6696259-C	0.408851	4E-22		0.018055	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1357	chr1	101222656	101222657	rs10875333	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1p21.2		rs10875333-A	0.41	9E-17				Affymetrix [10369434] (imputed)	N
1357	chr1	101224619	101224620	rs12088882	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1p21.2		rs12088882-C	0.591	4E-20				Affymetrix [10369434] (imputed)	N
1357	chr1	101224619	101224620	rs12088882	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p21.2		rs12088882-C	0.591	1E-38				Affymetrix [10369434] (imputed)	N
1357	chr1	101224619	101224620	rs12088882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p21.2		rs12088882-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1357	chr1	101225443	101225444	rs2148404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p21.2		rs2148404-A	0.589993	5E-17		0.019000856	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr1	101225443	101225444	rs2148404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2		rs2148404-A	0.589981	3E-10		0.014811096	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr1	101225443	101225444	rs2148404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2		rs2148404-A	0.589968	2E-22		0.023079196	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr1	101228492	101228493	rs12047102	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p21.2		rs12047102-C	0.409	1E-35				Affymetrix [10369434] (imputed)	N
1357	chr1	101239293	101239294	rs147120681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1p21.2	intergenic	rs147120681-C	0.4365	4E-14		0.0272701	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr1	101239293	101239294	rs147120681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p21.2	intergenic	rs147120681-C	0.4365	8E-15		0.0279501	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1357	chr1	101240892	101240893	rs7552544	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p21.2	VCAM1	rs7552544-A	0.43	2E-16		1.1		Illumina [161311]	N
1357	chr1	101242592	101242593	rs12567000	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p21.2		rs12567000-T	0.781	2E-9				Affymetrix [10369434] (imputed)	N
1358	chr1	101331535	101331536	rs12048904	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	VCAM1, EXTL2	rs12048904-A	NR	4E-8	(Conditioned on rs11581062)	1.09	[1.08-1.11]	Illumina [465434]	N
1358	chr1	101331535	101331536	rs12048904	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	EXTL2	rs12048904-A	NR	4E-8		1.09	[1.08-1.11]	Illumina [465434]	N
1358	chr1	101407518	101407519	rs11581062	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p21.2	SLC30A7, VCAM1	rs11581062-G	NR	3E-10		1.12	[1.1-1.13]	Illumina [465434]	N
1358	chr1	101412901	101412902	rs11578655	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p21.2	SLC30A7	rs11578655-G	NR	3E-8		1.0866022	NR	Affymetrix, Illumina [8278136] (imputed)	N
1359	chr1	101466053	101466054	rs11583043	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p21.2	SLC30A, EDG1	rs11583043-A	0.2658	6E-8	(EA)	1.0797532	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1359	chr1	101466053	101466054	rs11583043	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p21.2	EDG1, SLC30A	rs11583043-A	0.2658	2E-6	(EA)	1.0553302	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1359	chr1	101540998	101540999	rs17450029	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	1p21.2	DPH5	rs17450029-T	0.23	3E-6	(Tri-Tetra/cyclic antidepressants)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1359	chr1	101551925	101551926	rs17410015	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	1p21.2	intergenic	rs17410015-?	0.063	2E-6	(perphenazine-triglycerides)			Affymetrix [492900]	N
1360	chr1	101587810	101587811	rs11577369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2		rs11577369-A	0.108375	1E-13		0.028964238	[0.021-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101588378	101588379	rs34749125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p21.2		rs34749125-C	0.117884	2E-10		0.021808991	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101604752	101604753	rs12756986	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	1p21.2	S1PR1	rs12756986-?	NR	4E-6			[1.068-1.1594]	NR [2492237]	N
1360	chr1	101604780	101604781	rs7524946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p21.2	NR	rs7524946-A	NR	9E-10		0.0231	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr1	101604780	101604781	rs7524946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p21.2	NR	rs7524946-A	NR	8E-19		0.0335	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr1	101607231	101607232	rs78149342	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	1p21.2	NR	rs78149342-?	NR	3E-6		1.475	[0.74-2.21] unit decrease	Illumina [at least 560000] (imputed)	N
1360	chr1	101621445	101621446	rs7534824	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	1p21.2	LOC101928334	rs7534824-A	0.967	9E-7	(Asian, 25 years or older)	2.304	[1.651-3.214]	Affymetrix, Illumina [NR] (imputed)	N
1360	chr1	101622619	101622620	rs76289267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2		rs76289267-G	0.116344	3E-13		0.02631458	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101622959	101622960	rs17123757	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and C-reactive protein levels (pleiotropy)	93,333 individuals	NA	1p21.2	S1PR1	rs17123757-?	NR	3E-6			[1.0664-1.1551]	NR [2418544]	N
1360	chr1	101624529	101624530	rs72987295	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	1p21.2	DPH5, S1PR1	rs72987295-A	0.246	3E-6		1.67	[NR]	Illumina [2483385] (imputed)	N
1360	chr1	101625882	101625883	rs1754541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p21.2	intergenic	rs1754541-G	0.3006	5E-14		0.02945738	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101625882	101625883	rs1754541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p21.2	intergenic	rs1754541-G	0.3006	2E-18		0.03439151	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101625882	101625883	rs1754541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p21.2	intergenic	rs1754541-G	0.3006	1E-18		0.03447103	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101625882	101625883	rs1754541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p21.2	intergenic	rs1754541-G	0.3006	7E-15		0.03044218	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101643837	101643837	rs533650628	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1p21.2	intergenic	rs533650628-AT	0.2948	7E-19		0.03557041	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101644914	101644915	rs74977884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p21.2		rs74977884-G	NR	6E-10		0.0222	[0.015-0.029] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1360	chr1	101647625	101647626	rs76382185	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p21.2	intergenic	rs76382185-T	0.1173	1E-14		0.04325566	[0.032-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101652521	101652522	rs111759324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p21.2	NR	rs111759324-T	0.110759	4E-42		0.043024	[0.037-0.049] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1360	chr1	101652521	101652522	rs111759324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1p21.2	RP5-1033H2.1	rs111759324-T	0.1108	3E-14		0.04323262	[0.032-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101652521	101652522	rs111759324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1p21.2	RP5-1033H2.1	rs111759324-T	0.1109	2E-14		0.04357107	[0.032-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101652521	101652522	rs111759324	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1p21.2	RP5-1033H2.1	rs111759324-T	0.1109	1E-13		0.04218729	[0.031-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101653124	101653125	rs74431709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs74431709-G	0.110661	3E-19		0.03304191	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101653124	101653125	rs74431709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs74431709-G	0.110655	5E-17		0.030885842	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101653124	101653125	rs74431709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.2	NR	rs74431709-G	0.0957223	9E-42				Affymetrix, Illumina [19872809] (imputed)	N
1360	chr1	101653124	101653125	rs74431709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p21.2		rs74431709-?	NR	3E-33				NR [~ 8900000] (imputed)	N
1360	chr1	101655115	101655116	rs35649529	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1p21.2		rs35649529-T	0.614	4E-13				Affymetrix [10369434] (imputed)	N
1360	chr1	101656159	101656160	rs4581298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs4581298-C	0.695842	4E-11		0.016619489	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101656159	101656160	rs4581298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs4581298-C	0.695837	2E-13		0.018492522	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101656406	101656407	rs35526088	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p21.2	NR	rs35526088-T	0.38604799999999995	3E-8		0.00653555	[0.0042-0.0088] unit increase	Affymetrix [16582621] (imputed)	N
1360	chr1	101656406	101656407	rs35526088	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p21.2	NR	rs35526088-T	0.38604799999999995	2E-9		0.00735374	[0.0049-0.0098] unit increase	Affymetrix [16582614] (imputed)	N
1360	chr1	101656440	101656441	rs76841451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1p21.2		rs76841451-C	NR	1E-22		0.0273	[0.022-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1360	chr1	101656688	101656689	rs74106749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs74106749-T	0.359214	5E-11		0.016091768	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101657184	101657185	rs3900628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p21.2		rs3900628-C	0.604	7E-14				Affymetrix [10369434] (imputed)	N
1360	chr1	101657184	101657185	rs3900628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1p21.2		rs3900628-C	0.604	2E-9				Affymetrix [10369434] (imputed)	N
1360	chr1	101657377	101657378	rs144681437	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p21.2	S1PR1	rs144681437-A	NR	4E-7		0.8685157	[0.55-1.18] unit decrease	Illumina [> 6200000] (imputed)	N
1360	chr1	101659342	101659343	rs77666400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p21.2		rs77666400-C	NR	4E-32		0.0284	[0.024-0.033] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1360	chr1	101659342	101659343	rs77666400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p21.2		rs77666400-C	NR	3E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1360	chr1	101659342	101659343	rs77666400	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p21.2	LOC101928370	rs77666400-T	0.736744	2E-44		0.0078827	[0.0067-0.009] unit decrease	Affymetrix [13995440] (imputed)	N
1360	chr1	101659342	101659343	rs77666400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p21.2	RP5-1033H2.1	rs77666400-C	0.262775	1E-13		0.018968772	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101664643	101664644	rs10875357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p21.2		rs10875357-C	0.296337	6E-12		0.017346296	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101664643	101664644	rs10875357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p21.2		rs10875357-C	0.29634	1E-11		0.017062934	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101682049	101682050	rs12404070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1p21.2	intergenic	rs12404070-C	0.1025	3E-10		0.03724984	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101683164	101683165	rs12405527	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	1p21.2	NR	rs12405527-A	0.0702	6E-7		1.71343	[NR]	NR [9372253] (imputed)	N
1360	chr1	101688078	101688079	rs61783374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p21.2	NR	rs61783374-T	NR	6E-10		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr1	101689881	101689884	rs140567266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2	snoU13	rs140567266-T	0.765804	3E-13		0.020126596	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101689881	101689884	rs140567266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	snoU13	rs140567266-T	0.76584	3E-11		0.018162634	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101702358	101702359	rs146490475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	RP4-575N6.4, S1PR1	rs146490475-C	0.0171750000000001	2E-10		0.060181428	[0.042-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101702358	101702359	rs146490475	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p21.2	S1PR1, RP4-575N6.4	rs146490475-C	0.0183	3E-10		0.09372974	[0.064-0.123] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101702547	101702548	rs3835397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	S1PR1	rs3835397-A	0.032655	2E-17		0.054686837	[0.042-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101702547	101702548	rs3835397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p21.2	S1PR1	rs3835397-A	0.0324	3E-15		0.08106704	[0.061-0.101] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1360	chr1	101703248	101703249	rs1411017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2	S1PR1	rs1411017-C	0.03107	3E-14		0.048959	[0.036-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr1	101704531	101704532	rs3737577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	S1PR1	rs3737577-T	0.363078	2E-12		0.017889949	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101704576	101704577	rs41287280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2	S1PR1	rs41287280-G	0.021057	6E-17		0.064735726	[0.05-0.08] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101704576	101704577	rs41287280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	S1PR1	rs41287280-G	0.021042	9E-21		0.07342293	[0.058-0.089] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr1	101704576	101704577	rs41287280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p21.2	S1PR1	rs41287280-G	0.0212	2E-19		0.1128728	[0.088-0.137] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr1	101714552	101714553	rs145043452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p21.2		rs145043452-C	0.00224299999999999	3E-15		0.19871475	[0.15-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr1	101716687	101716688	rs765344	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p21.2		rs765344-C	0.28	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
1361	chr1	101716687	101716688	rs765344	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p21.2		rs765344-C	0.28	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1361	chr1	101716687	101716688	rs765344	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p21.2	NR	rs765344-C	0.231	9E-9				NR [9056863] (imputed)	N
1361	chr1	101724950	101724951	rs7532171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	1p21.2	NR	rs7532171-T	NR	5E-10		0.0268	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1361	chr1	101733456	101733457	rs77372977	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	1p21.2	S1PR1, LINC01307	rs77372977-?	NR	3E-32		0.2641	[0.22-0.31] unit decrease novel	Illumina [6108953] (imputed)	N
1361	chr1	101735916	101735917	rs2392239	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	1p21.2		rs2392239-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1361	chr1	101735916	101735917	rs2392239	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1p21.2		rs2392239-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1361	chr1	101735916	101735917	rs2392239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2	PPIAP7	rs2392239-T	0.307542	9E-20		0.022195106	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr1	101735916	101735917	rs2392239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2	PPIAP7	rs2392239-T	0.307564	3E-28		0.027837757	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr1	101735916	101735917	rs2392239	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1p21.2	NR	rs2392239-T	0.307566	3E-19		0.0193946	[0.015-0.024] unit increase	Affymetrix [16583148] (imputed)	N
1361	chr1	101737742	101737743	rs6684361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p21.2	NR	rs6684361-C	0.307562	3E-70		0.0247434	[0.022-0.027] unit increase	Affymetrix [16578495] (imputed)	N
1361	chr1	101737742	101737743	rs6684361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p21.2	NR	rs6684361-C	0.30695300000000003	7E-141		0.07582	[0.07-0.082] unit increase	Affymetrix [16580851] (imputed)	N
1361	chr1	101737742	101737743	rs6684361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p21.2	NR	rs6684361-C	0.30696999999999997	5E-48		0.0395286	[0.034-0.045] unit increase	Affymetrix [16585745] (imputed)	N
1361	chr1	101738120	101738121	rs78900934	28887542	Prins BP	2017-09-08	Sci Rep	Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations.	Dehydroepiandrosterone sulphate levels	5,414 European ancestry women, 4,308 European ancestry men	9,888 European ancestry individuals, 16,013 individuals	1p21.2	PPIAP7	rs78900934-A	0.31	6E-12		0.05	[0.030-0.070] unit increase	Illumina [at least 23756480] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p21.2		rs77046277-G	NR	9E-19		0.1234	[0.096-0.151] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	1p21.2		rs77046277-G	0.012623	2E-60		0.325016	[0.29-0.36] unit decrease	Illumina [13471431] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p21.2		rs77046277-G	NR	9E-128		0.4059	[0.37-0.44] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p21.2		rs77046277-G	NR	1E-8		0.5548	[0.36-0.75] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p21.2	NR	rs77046277-G	0.00151599999999996	4E-11		0.19881411	[0.14-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p21.2		rs77046277-G	0.00151400000000002	1E-50		0.45252255	[0.39-0.51] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p21.2		rs77046277-G	0.00151400000000002	2E-86		0.5956964	[0.54-0.65] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p21.2		rs77046277-G	0.00151500000000004	8E-115		0.68788457	[0.63-0.75] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.2	NR	rs77046277-G	0.00359582	4E-23				Affymetrix, Illumina [24649327] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	1p21.2	NR	rs77046277-C	0.988462	3E-11		0.115306	[0.081-0.149] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	1p21.2	NR	rs77046277-C	0.988027	4E-57		0.347867	[0.31-0.39] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.2	NR	rs77046277-C	0.997006	2E-200				Affymetrix, Illumina [23472807] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p21.2	NR	rs77046277-C	0.998553	2E-150		0.712403	[0.66-0.77] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1p21.2	intergenic	rs77046277-G	0.0016	6E-15		0.4025734	[0.3-0.5] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1361	chr1	101744645	101744646	rs77046277	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p21.2	intergenic	rs77046277-G	0.0016	7E-25		0.5373136	[0.44-0.64] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1361	chr1	101745410	101745411	rs9434167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,366 Icelandic ancestry individuals	NA	1p21.2		rs9434167-T	0.1872	3E-16		0.191425	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1361	chr1	101748756	101748757	rs74578465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1p21.2		rs74578465-T	0.01191	5E-13		0.113188	[0.082-0.144] unit decrease	Illumina [13479091] (imputed)	N
1361	chr1	101765924	101765925	rs10493945	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1p21.2		rs10493945-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1361	chr1	101766672	101766673	rs143623984	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p21.2	Intergenic	rs143623984-?		9E-6		3.25	[1.93-5.48]	Illumina [7645193] (imputed)	N
1361	chr1	101839043	101839044	rs6695400	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1p21.2	LINC01307	rs6695400-G	0.1704	8E-6				Illumina [4404269] (imputed)	N
1362	chr1	101874585	101874586	rs74497159	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	1p21.2	S1PR1	rs74497159-?		4E-7		0.591	[NR] unit increase	Illumina [6030476] (imputed)	N
1362	chr1	101880004	101880005	rs2338971	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	1p21.2	HUSEYO	rs2338971-C	0.773	5E-10		1.32	[1.26-1.38]	Illumina [811597]	N
1362	chr1	101880004	101880005	rs2338971	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	1p21.2	HUSEYO	rs2338971-C	0.773	4E-10	(Sporadic)	1.35	[1.27-1.43]	Illumina [811597]	N
1362	chr1	101897970	101897971	rs1565565	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.2	OLFM3	rs1565565-?	NR	7E-7	(LPC 18:2)	0.17379776	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1362	chr1	101924959	101924960	rs3131385	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.2	OLFM3	rs3131385-?	NR	6E-6	(CE 18:1)	0.15481861	[0.088-0.222] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1362	chr1	101937848	101937849	rs72723684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.2	NR	rs72723684-A	0.01394	9E-10	(SAA1)	0.223	NR unit increase	Illumina [1671387] (imputed)	N
1362	chr1	101938476	101938477	rs1948368	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	1p21.2	NR	rs1948368-?	0.51	6E-6		1.15	[NR]	Affymetrix [1769948] (imputed)	N
1362	chr1	101940655	101940656	rs1419103	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	1p21.2	intergenic	rs1419103-?	NR	6E-6				Affymetrix [1769948] (imputed)	N
1363	chr1	102009913	102009914	rs1146714	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels x sex interaction in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	1p21.2	intergenic	rs1146714-?	0.3	5E-6				Illumina [628376]	N
1363	chr1	102024989	102024990	rs1484309	32998964	Trendowski MR	2020-09-30	Clin Cancer Res	Clinical and Genome-Wide Analysis of Multiple Severe Cisplatin-Induced Neurotoxicities in Adult-Onset Cancer Survivors.	Multiple severe cisplatin-induced neurotixicitiies in testicular cancer survivors	104 European ancestry cases, 196 European ancestry controls	NA	1p21.2	NR	rs1484309-A		9E-6		5.944	[NR]	Illumina [5385324] (imputed)	N
1363	chr1	102029841	102029842	rs1688589	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p21.2	NR	rs1688589-G	0.8998	2E-6		0.0712	[0.042-0.1] unit increase	Illumina [up to 1980188] (imputed)	N
1364	chr1	102170294	102170295	rs11164273	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.2		rs11164273-T	0.6176	2E-12		0.0804	[0.058-0.103] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1365	chr1	102242916	102242917	rs6668441	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	1p21.2	Intergenic	rs6668441-?		5E-6		1.9264112	[NR]	Affymetrix [492217] (imputed)	N
1365	chr1	102299407	102299408	rs4908190	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p21.1	NR	rs4908190-?	NR	2E-6		0.8	[0.74-0.87]	Illumina [539000] (imputed)	N
1365	chr1	102302189	102302190	rs72650203	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1777 sp900319835 abundance in stool	5,959 Finnish ancestry individuals	NA	1p21.1		rs72650203-T	0.0535562	1E-8		0.0753109	[0.049-0.101] unit decrease	Illumina [7980478] (imputed)	N
1366	chr1	102390701	102390702	rs1327589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p21.1		rs1327589-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1366	chr1	102430633	102430634	rs6577293	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1p21.1	OLFM3	rs6577293-T	0.7673	6E-6		0.1125	[0.064-0.161] unit increase	NR [NR] (imputed)	N
1366	chr1	102430633	102430634	rs6577293	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	1p21.1	OLFM3	rs6577293-T	0.7652	6E-6		0.1132	[0.064-0.162] unit increase	NR [NR] (imputed)	N
1367	chr1	102508092	102508093	rs4133019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1p21.1		rs4133019-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1367	chr1	102577020	102577021	rs11578152	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1p21.1	OLFM3	rs11578152-G	0.44	5E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1368	chr1	102699684	102699685	rs116071213	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1p21.1	NR	rs116071213-G	0.0403872	4E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1368	chr1	102726398	102726399	rs17126268	24351856	Nanayakkara S	2013-12-18	J Occup Health	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sri Lankan Sinhalese ancestry cases, 276 Sri Lankan Sinhalese ancestry controls	NA	1p21.1	OLFM3	rs17126268-C	0.10	7E-7		2.78	[NR] unit increase	Illumina [543848]	N
1369	chr1	102798295	102798296	rs12403957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p21.1	Intergenic	rs12403957-C	0.7277	4E-8	(MTAG)	0.0081	[0.0052-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1370	chr1	102918353	102918354	rs2185431	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	1p21.1	RP11-202K23.1	rs2185431-C	NR	8E-6		10.02	[5.6-14.44] unit increase	Illumina [NR] (imputed)	N
1370	chr1	102958016	102958017	rs11164528	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p21.1	intergenic	rs11164528-T	NR	6E-6	(G_Faecalitalea_HB)	0.550634	[0.31-0.79] unit increase	Illumina [7711310] (imputed)	N
1370	chr1	102959666	102959667	rs11164530	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	1p21.1	OLFM3, COL11A1	rs11164530-C	0.85	2E-6	(Women)	0.014369881	[0.0084-0.0203] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1370	chr1	102967149	102967150	rs12752401	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	1p21.1	intergenic	rs12752401-?	0.07	8E-6		2.0	[1.47-2.78]	Affymetrix, Illumina [2530150] (imputed)	N
1371	chr1	103040473	103040474	rs1517426	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	1p21.1	NR	rs1517426-?		1E-6	(genus_Faecalibacterium)	0.595548	[0.37-0.82] unit decrease	Affymetrix [212153]	N
1371	chr1	103041317	103041318	rs35041402	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	1p21.1	intergenic	rs35041402-C	3.0E-4	2E-33		23.7766	[19.91-27.64] mmHg increase	Affymetrix [NR] (imputed)	N
1371	chr1	103090164	103090165	rs6577327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs6577327-A	0.440739	2E-10		0.075846	[0.053-0.099] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1371	chr1	103133908	103133909	rs10874639	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1p21.1	COL11A1	rs10874639-?	0.12	3E-6	(Fibrinogen)			Illumina [496032]	N
1371	chr1	103147830	103147831	rs1823549	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	1p21.1	COL11A1	rs1823549-?		3E-7	(Additive)	2.5	[1.67-3.33]	Illumina [5600610] (imputed)	N
1372	chr1	103203106	103203107	rs1376359	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1p21.1	NR	rs1376359-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
1372	chr1	103204646	103204647	rs6688495	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	1p21.1	NR	rs6688495-G	NR	5E-6		0.117	[0.066-0.168] unit decrease	Illumina [6319684] (imputed)	N
1372	chr1	103206315	103206316	rs1597583	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP5-936J12.1	rs1597583-T	NR	2E-8		0.0181497	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1372	chr1	103240350	103240351	rs12406439	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	1p21.1	COL11A1	rs12406439-T	0.587	1E-8		1.08	[1.05-1.11]	Affymetrix [84000000] (imputed)	N
1373	chr1	103298184	103298185	rs12034088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p21.1		rs12034088-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1373	chr1	103298208	103298209	rs2708396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP5-936J12.1	rs2708396-A	NR	1E-9		0.0210509	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103330776	103330777	rs2616003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs2616003-G	NR	2E-10		0.0208053	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103335336	103335337	rs148528197	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1p21.1	NR	rs148528197-?	NR	2E-6		1.0802	[0.63-1.53] unit increase	NR [13958389] (imputed)	N
1373	chr1	103345743	103345744	rs12722976	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p21.1		rs12722976-G	0.49	3E-25		10.39	z score increase	Affymetrix [9061022] (imputed)	N
1373	chr1	103345743	103345744	rs12722976	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p21.1		rs12722976-G	0.49	1E-18		8.81	z score increase	Affymetrix [9061022] (imputed)	N
1373	chr1	103345743	103345744	rs12722976	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p21.1	NR	rs12722976-G	0.4941	1E-17				NR [9056863] (imputed)	N
1373	chr1	103345743	103345744	rs12722976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs12722976-C	NR	3E-8		0.015609	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1373	chr1	103345743	103345744	rs12722976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs12722976-C	NR	4E-13		0.0203696	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1373	chr1	103353932	103353933	rs11164633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs11164633-G	NR	2E-9		0.0189007	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103370976	103370977	rs11576308	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p21.1	COL11A1	rs11576308-G	0.387736	3E-16		0.0153855	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1373	chr1	103370976	103370977	rs11576308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p21.1		rs11576308-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1373	chr1	103370976	103370977	rs11576308	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p21.1		rs11576308-?	NR	2E-16		0.0178789	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Trochanter size	28,944 European ancestry individuals	8,065 European ancestry individuals, 5,711 East Asian ancestry individuals	1p21.1	COL11A1	rs3753841-G	0.391	4E-17		0.067	[0.051-0.082] unit increase	Illumina [33400000] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	1p21.1	COL11A1	rs3753841-G	0.391	9E-6		0.03	[NR] unit increase	Illumina [33400000] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	1p21.1	COL11A1	rs3753841-G	0.391	7E-13		0.057	[0.041-0.072] unit increase	Illumina [33400000] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	1p21.1	COL11A1	rs3753841-G	0.391	1E-20		0.068	[0.054-0.082] unit increase	Illumina [33400000] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	1p21.1	COL11A1	rs3753841-G		4E-21	(Asian)	1.21	[NR]	Illumina [5245080] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	1p21.1	COL11A1	rs3753841-G		1E-23		1.21	[NR]	Illumina [5245080] (imputed)	N
1373	chr1	103379917	103379918	rs3753841	22922875	Vithana EN	2012-08-26	Nat Genet	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	1p21.1	COL11A1	rs3753841-G	NR	9E-10		1.2	[NR]	Illumina [493501]	N
1373	chr1	103380892	103380896	rs141853979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p21.1		rs141853979-C	NR	5E-9		0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1373	chr1	103380892	103380896	rs141853979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	1p21.1		rs141853979-C	NR	5E-9		0.0669	[0.045-0.089] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1373	chr1	103385372	103385373	rs993471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs993471-G	NR	2E-11		0.0192154	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1373	chr1	103385372	103385373	rs993471	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	1p21.1	COL11A1	rs993471-G	NR	2E-8		1.08	1.05-1.11	Affymetrix [at least 665500] (imputed)	N
1373	chr1	103391620	103391621	rs1676487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs1676487-G	NR	5E-11		0.027836	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103394252	103394253	rs12125205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs12125205-T	NR	6E-11		0.0364058	[0.025-0.047] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103399206	103399207	rs12756209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs12756209-A	0.863723	5E-12		0.140551	[0.1-0.18] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1373	chr1	103404218	103404219	rs2376262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs2376262-C	NR	4E-10		0.0179932	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1373	chr1	103404383	103404384	rs2126643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs2126643-T	NR	2E-17		0.027424	[0.021-0.034] unit increase	Affymetrix [323123] (imputed)	N
1373	chr1	103404383	103404384	rs2126643	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	1p21.1	COL11A1	rs2126643-C	NR	2E-14	(additive)	1.1	[1.08-1.13]	Affymetrix, Illumina [11554240] (imputed)	N
1374	chr1	103417202	103417203	rs2061708	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p21.1	NR	rs2061708-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1374	chr1	103417202	103417203	rs2061708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p21.1		rs2061708-?	NR	7E-56				NR [~ 8900000] (imputed)	N
1374	chr1	103417202	103417203	rs2061708	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p21.1	NA	rs2061708-C	0.5884	2E-14		0.0152	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1374	chr1	103421343	103421344	rs2622849	29266176	Inaba H	2017-12-19	Cancer	Bone mineral density in children with acute lymphoblastic leukemia.	Bone mineral density change response to combined chemotherapy in acute lymphoblastic leukemia	235 European ancestry cases, 48 African American ancestry cases, 13 cases	NA	1p21.1	COL11A1	rs2622849-T	0.051	2E-7		1.071	z score decrease	Affymetrix [448281]	N
1374	chr1	103432656	103432657	rs12755987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs12755987-A	NR	3E-10		0.0192719	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p21.1		rs2061705-G	0.49	2E-11		6.68	z score increase	Affymetrix [9061022] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p21.1	NR	rs2061705-G	0.491	1E-11				NR [9056863] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs2061705-G	NR	6E-9		0.0182661	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p21.1	COL11A1	rs2061705-G	NR	3E-8		0.0173166	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs2061705-G	NR	6E-13		0.0220941	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p21.1	NR	rs2061705-G	0.5	5E-13		0.013	[0.0095-0.0165] unit increase	Affymetrix [2446094] (imputed)	N
1374	chr1	103441813	103441814	rs2061705	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p21.1	NR	rs2061705-G	0.5	5E-8				Affymetrix [2446094] (imputed)	N
1374	chr1	103452741	103452742	rs12121824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs12121824-C	NR	2E-10		0.0234253	[0.016-0.031] unit increase	Affymetrix [323123] (imputed)	N
1374	chr1	103455216	103455217	rs1463034	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	1p21.1	COL11A1	rs1463034-?	NR	2E-9	(EA)	0.0126	[0.012-0.013] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1374	chr1	103455216	103455217	rs1463034	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	1p21.1	COL11A1	rs1463034-?	NR	2E-6		0.0121	[0.012-0.012] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1374	chr1	103456996	103456996	rs143424888	32970095	Clifford RE	2020-09-24	JAMA Otolaryngol Head Neck Surg	Novel Risk Loci in Tinnitus and Causal Inference With Neuropsychiatric Disorders Among Adults of European Ancestry.	Tinnitus	172,995 European ancestry individuals	94,755 European ancestry cases, 166,077 European ancestry controls	1p21.1	COL11A1	rs143424888-C	0.505	1E-10		1.04	[1.03-1.05]	Affymetrix [up to 96000000] (imputed)	N
1374	chr1	103458913	103458914	rs12139120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs12139120-C	NR	2E-13		0.0305179	[0.022-0.039] unit increase	Affymetrix [323123] (imputed)	N
1374	chr1	103459536	103459537	rs11809524	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1p21.1	COL11A1	rs11809524-T	0.85	9E-6		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1374	chr1	103464209	103464210	rs11164653	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	1p21.1		rs11164653-T	0.4131	3E-18		0.92320865	[0.906710858-0.940006648]	Affymetrix, Illumina [NR] (imputed)	N
1374	chr1	103466052	103466053	rs2622873	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	1p21.1	NR	rs2622873-T	0.87	2E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1374	chr1	103466052	103466053	rs2622873	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	1p21.1	NR	rs2622873-T	0.87	1E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1374	chr1	103483513	103483514	rs945748	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs945748-C	NR	5E-8		0.0186014	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1374	chr1	103507113	103507114	rs58975794	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p21.1	COL11A1	rs58975794-?		7E-7				Illumina [4322238] (imputed)	N
1374	chr1	103534447	103534448	rs1591637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p21.1		rs1591637-T	NR	5E-33		0.0185	[0.016-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1374	chr1	103539980	103539981	rs7522293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs7522293-A	NR	3E-8		0.0164745	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1374	chr1	103539980	103539981	rs7522293	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 83)	19,670 European ancestry individuals	NA	1p21.1		rs7522293-?	NR	3E-11				NR [9705931] (imputed)	N
1374	chr1	103539980	103539981	rs7522293	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.1	NR	rs7522293-A	NR	2E-9		5.967	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1375	chr1	103551477	103551478	rs4908289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs4908289-T	NR	6E-14		0.0215914	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
1375	chr1	103552045	103552046	rs11164666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs11164666-C	NR	1E-16		0.0257946	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
1375	chr1	103552814	103552815	rs1415364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p21.1		rs1415364-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1375	chr1	103568463	103568464	rs2376280	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.1	NR	rs2376280-A	NR	4E-8		5.494	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1375	chr1	103570637	103570637	rs11413746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs11413746-A	NR	1E-8		0.0165068	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1375	chr1	103572926	103572927	rs4338381	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	1p21.1	NR	rs4338381-A	0.63	4E-15		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1375	chr1	103572926	103572927	rs4338381	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p21.1	COL11A1	rs4338381-A	0.6391	2E-6		0.0334	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1375	chr1	103580648	103580649	rs56361645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p21.1		rs56361645-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1375	chr1	103581749	103581750	rs12123966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs12123966-G	NR	1E-8		0.0289733	[0.019-0.039] unit increase	Affymetrix [323123] (imputed)	N
1375	chr1	103586051	103586052	rs6577356	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p21.1	NR	rs6577356-C	0.478131	4E-9		0.0368734	[0.025-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1375	chr1	103586051	103586052	rs6577356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p21.1	Intergenic	rs6577356-T	0.5075	4E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1375	chr1	103588506	103588507	rs9663072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p21.1	Intergenic	rs9663072-A	0.7019	2E-8	(MTAG)	0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1375	chr1	103591464	103591465	rs12026245	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p21.1	COL11A1	rs12026245-A	NR	3E-8		0.016103648	[0.01-0.022] unit decrease	Affymetrix [NR]	N
1375	chr1	103603451	103603452	rs11164689	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	1p21.1	intergenic	rs11164689-T	0.065	4E-6		0.491	[0.28-0.7] unit increase	Illumina [621723]	N
1375	chr1	103603451	103603452	rs11164689	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	1p21.1	intergenic	rs11164689-?	0.065	9E-6	(adjusted for age, sex & diabetes)	0.175	[NR] unit increase	Illumina [621723]	N
1375	chr1	103604268	103604269	rs1415365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	COL11A1	rs1415365-G	NR	3E-12		0.0213188	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1375	chr1	103613353	103613354	rs7551474	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p21.1	COL11A1	rs7551474-?		5E-9				NR [7428630] (imputed)	N
1375	chr1	103613355	103613356	rs7549108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p21.1	COL11A1	rs7549108-A	NR	1E-9		0.0171302	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1375	chr1	103629447	103629448	rs75771586	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p21.1	NR	rs75771586-?	NR	9E-6		4.441	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1375	chr1	103630100	103630101	rs12140409	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p21.1	NR	rs12140409-?	NR	9E-7		0.59	[0.55-0.63]	Illumina [539000] (imputed)	N
1375	chr1	103632360	103632361	rs6577362	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	1p21.1	COL11A1	rs6577362-A	0.666	8E-9		5.77	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
1375	chr1	103656577	103656578	rs1528204	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p21.1	NR	rs1528204-T	NR	5E-11		6.558	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1376	chr1	103713163	103713164	rs2037817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP11-347K2.1	rs2037817-C	NR	7E-11		0.0221363	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
1376	chr1	103738033	103738034	rs4536028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP11-347K2.1	rs4536028-C	NR	1E-10		0.0266516	[0.019-0.035] unit increase	Affymetrix [323123] (imputed)	N
1376	chr1	103747392	103747393	rs181147523	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p21.1	intergenic	rs181147523-T	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1376	chr1	103747392	103747393	rs181147523	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p21.1	intergenic	rs181147523-T	NR	7E-6				Illumina [up to 11995908] (imputed)	N
1376	chr1	103751373	103751374	rs61815089	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p21.1	NR	rs61815089-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1376	chr1	103752050	103752051	rs7418329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP11-347K2.1	rs7418329-A	NR	1E-8		0.0181838	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1376	chr1	103756872	103756873	rs12240003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p21.1	RP11-347K2.1	rs12240003-C	NR	1E-8		0.0207521	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1378	chr1	104019630	104019631	rs7524694	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	intergenic	rs7524694-G	0.131	7E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
1378	chr1	104027931	104027932	rs142370265	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY2B	5,365 Icelandic ancestry individuals	NA	1p21.1		rs142370265-T	0.04641	1E-52		0.681084	[0.59-0.77] unit decrease	Illumina [7506463] (imputed)	N
1378	chr1	104067355	104067356	rs7538379	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p21.1	AMY1A	rs7538379-T	0.04	5E-63	(Alpha-amylase 1, AMY1A.7918.114.3)	1.04	[0.92-1.16] unit decrease	Affymetrix [10572788] (imputed)	N
1379	chr1	104082688	104082689	rs142257509	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY1A	5,361 Icelandic ancestry individuals	NA	1p21.1		rs142257509-G	0.04084	7E-109		0.9914	[0.9-1.08] unit decrease	Illumina [7506463] (imputed)	N
1379	chr1	104105634	104105635	rs17014913	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p21.1	AMY2B	rs17014913-A	0.83859375	3E-36	(AMY2B, 10439_57_3)	0.43253788	[0.37-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1379	chr1	104108881	104108882	rs77729677	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY2B	5,365 Icelandic ancestry individuals	NA	1p21.1		rs77729677-G	0.06153	8E-36		0.482816	[0.41-0.56] unit increase	Illumina [7506463] (imputed)	N
1379	chr1	104131456	104131457	rs114922930	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY1A	5,361 Icelandic ancestry individuals	NA	1p21.1		rs114922930-T	0.01971	4E-32		0.76006	[0.63-0.89] unit decrease	Illumina [7506463] (imputed)	N
1379	chr1	104131456	104131457	rs114922930	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p21.1	NR	rs114922930-T	0.014	4E-15	(Alpha-amylase 1, AMY1A.7918.114.3)	0.84	[0.62-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
1379	chr1	104158234	104158235	rs142439658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY1A	5,361 Icelandic ancestry individuals	NA	1p21.1		rs142439658-T	0.02307	4E-23		0.610441	[0.49-0.73] unit increase	Illumina [7506463] (imputed)	N
1380	chr1	104204779	104204780	rs370981115	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p21.1	NR	rs370981115-T	0.132	3E-19	(Alpha-amylase 1, AMY1A.7918.114.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1380	chr1	104324818	104324819	rs1930212	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY2B	5,365 Icelandic ancestry individuals	NA	1p21.1		rs1930212-G	0.1785	4E-70		0.430592	[0.38-0.48] unit decrease	Illumina [7506463] (imputed)	N
1381	chr1	104363894	104363895	rs11800555	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY2B	5,365 Icelandic ancestry individuals	NA	1p21.1		rs11800555-A	0.0244	4E-14		0.45749	[0.34-0.58] unit decrease	Illumina [7506463] (imputed)	N
1381	chr1	104364877	104364878	rs72694438	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	1p21.1	AMY1C	rs72694438-A	0.21	2E-10		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1381	chr1	104364877	104364878	rs72694438	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	1p21.1	AMY1C	rs72694438-A	0.21	4E-9		0.0401	[0.027-0.053] unit increase	Affymetrix [at least 8900000] (imputed)	N
1381	chr1	104367843	104367844	rs114930791	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	1p21.1	NR	rs114930791-T	0.015	2E-6		3.734	[2.178-6.401]	Illumina [7585599] (imputed)	N
1381	chr1	104394855	104394856	rs186699271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p21.1	AMY1A	rs186699271-A	0.9521875	6E-35	(AMY1A, 7918_114_3)	0.7162213	[0.6-0.83] unit increase	Illumina [> 1000000] (imputed)	N
1382	chr1	104470233	104470234	rs576153975	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p21.1	RP11-97C18.1	rs576153975-A	0.0028	7E-6		0.939	[0.53-1.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1382	chr1	104478204	104478205	rs4847150	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs4847150-A	0.1458	3E-11		0.105	[0.074-0.136] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1382	chr1	104571090	104571091	rs12026039	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	1p21.1		rs12026039-G	NR	4E-6		3.5248504	[2.99-4.06]	Illumina [7225561] (imputed)	N
1382	chr1	104585498	104585499	rs2984818	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	1p21.1	NR	rs2984818-?	NR	7E-6		1.765225	[1.37-2.27]	Illumina [13976150] (imputed)	N
1383	chr1	104598940	104598941	rs3934285	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	FTLP17	rs3934285-A	0.214	2E-6	(Trunk fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1383	chr1	104598940	104598941	rs3934285	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	FTLP17	rs3934285-A	0.214	2E-6	(Fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1383	chr1	104598940	104598941	rs3934285	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p21.1	FTLP17	rs3934285-A	0.214	2E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
1383	chr1	104630841	104630842	rs5005723	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1p21.1	LOC100129138	rs5005723-?		5E-6				Illumina [7405822] (imputed)	N
1383	chr1	104682972	104682973	rs140988946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY1A	5,361 Icelandic ancestry individuals	NA	1p21.1		rs140988946-C	0.04508	5E-74		0.814449	[0.73-0.9] unit decrease	Illumina [7506463] (imputed)	N
1383	chr1	104711710	104711711	rs12756615	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	1p21.1	NR	rs12756615-?	NR	8E-6		1.693767	[1.35-2.13]	Illumina [13976150] (imputed)	N
1384	chr1	104736066	104736067	rs7532231	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	1p21.1	RP11-364B6.1	rs7532231-A	NR	1E-6		2.2114108	[1.89-2.53]	Illumina [7225561] (imputed)	N
1384	chr1	104780639	104780640	rs6659967	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.1	NR	rs6659967-G	0.03833	7E-10	(C9)	0.02256	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr1	104780639	104780640	rs6659967	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.1	NR	rs6659967-G	0.03833	2E-9	(HPX)	0.3295	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr1	104792256	104792257	rs11185408	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	1p21.1	Intergenic	rs11185408-G	0.477	1E-6		1.0649627	[NR]	Illumina [9112387] (imputed)	N
1384	chr1	104852737	104852738	rs10881542	22922875	Vithana EN	2012-08-26	Nat Genet	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	1p21.1	NR	rs10881542-?	NR	2E-6		1.18	[NR]	Illumina [493501]	N
1385	chr1	104966871	104966872	rs72685414	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	1p21.1	intergenic	rs72685414-A	NR	2E-6		0.3838	[0.23-0.54] unit increase	Illumina [9290362] (imputed)	N
1388	chr1	105284518	105284519	rs10494021	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1p21.1	NR	rs10494021-?	NR	7E-6		1.1399	[0.59-1.69] unit decrease	Illumina [at least 560000] (imputed)	N
1389	chr1	105384618	105384619	rs73003843	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs73003843-T	0.3069	5E-8		0.067	[0.043-0.091] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1389	chr1	105436485	105436486	rs12119667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs12119667-A	0.889235	1E-11		0.149702	[0.11-0.19] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1389	chr1	105436485	105436486	rs12119667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs12119667-A	0.895139	2E-12		0.166005	[0.12-0.21] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1389	chr1	105437106	105437107	rs11184343	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.1	AMY1C	rs11184343-?	NR	8E-6	(TAG 56:9)	0.17749031	[0.1-0.255] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1389	chr1	105455501	105455502	rs138897663	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs138897663-A	0.999	3E-6	(AA)	0.248	unit increase	Illumina [NR] (imputed)	N
1389	chr1	105455501	105455502	rs138897663	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs138897663-A	0.999	7E-7	(AA)	1.327	NR unit increase	Illumina [NR] (imputed)	N
1389	chr1	105471199	105471200	rs150884133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs150884133-A	0.998	2E-6	(AA)	0.226	unit increase	Illumina [NR] (imputed)	N
1389	chr1	105471199	105471200	rs150884133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs150884133-A	0.998	3E-7	(AA)	1.221	NR unit increase	Illumina [NR] (imputed)	N
1389	chr1	105476809	105476810	rs137917644	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs137917644-T	0.998	1E-6	(AA)	0.225	unit increase	Illumina [NR] (imputed)	N
1389	chr1	105476809	105476810	rs137917644	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs137917644-T	0.998	2E-7	(AA)	1.212	NR unit increase	Illumina [NR] (imputed)	N
1389	chr1	105476853	105476854	rs187464554	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs187464554-T	0.998	1E-6	(AA)	0.225	unit increase	Illumina [NR] (imputed)	N
1389	chr1	105476853	105476854	rs187464554	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs187464554-T	0.998	2E-7	(AA)	1.212	NR unit increase	Illumina [NR] (imputed)	N
1389	chr1	105491185	105491186	rs187226391	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs187226391-C	0.998	1E-6	(AA)	0.228	unit increase	Illumina [NR] (imputed)	N
1389	chr1	105491185	105491186	rs187226391	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p21.1	Intergenic	rs187226391-C	0.998	2E-7	(AA)	1.235	NR unit increase	Illumina [NR] (imputed)	N
1389	chr1	105497010	105497011	rs17015314	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	1p21.1	NR	rs17015314-A	0.88	8E-6		0.17	[0.092-0.248] unit decrease	Illumina [14638245] (imputed)	N
1390	chr1	105587619	105587619	rs146158788	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	1p21.1	NR	rs146158788-?	NR	6E-6		0.7349	NR	Illumina [at least 560000] (imputed)	N
1391	chr1	105716339	105716340	rs6693671	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	866 European and unknown ancestry individuals	NA	1p21.1	NR	rs6693671-?	NR	3E-6		0.1	[0.06-0.14] unit increase	Illumina [> 2600000] (imputed)	N
1392	chr1	105813518	105813519	rs72628706	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p21.1	NR	rs72628706-?	NR	5E-6		4.58	[3.53-5.95]	Illumina [539000] (imputed)	N
1393	chr1	105938461	105938462	rs11184553	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	1p21.1	NR	rs11184553-A	0.460644	6E-6		1.12	[1.07-1.18]	Illumina [8992756] (imputed)	N
1393	chr1	105971219	105971220	rs116663867	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p21.1	intergenic	rs116663867-C	0.0154067468463376	9E-7	(G_Odoribacter_HB)	1.28486	[0.77-1.8] unit decrease	Illumina [7711310] (imputed)	N
1393	chr1	106017470	106017472	rs10547412	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs10547412-A	0.3273	1E-13		0.0931	[0.069-0.118] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1394	chr1	106073092	106073093	rs4847127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs4847127-T	0.893636	6E-11		0.156008	[0.11-0.2] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1394	chr1	106081423	106081424	rs1710775	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	1p21.1		rs1710775-C	0.67	3E-6		1.7		Illumina [5411261] (imputed)	N
1394	chr1	106108924	106108925	rs1400087	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	1p21.1	NR	rs1400087-?		1E-7	(PCB180)	0.32	[0.2-0.44] unit increase	Affymetrix [622716]	N
1394	chr1	106115713	106115714	rs6660284	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	1p21.1	NR	rs6660284-?		7E-7	(PCB199)	0.34	[0.2-0.48] unit increase	Affymetrix [622716]	N
1394	chr1	106118358	106118359	rs9661353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs9661353-G	0.892396	5E-10		0.149231	[0.1-0.2] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1394	chr1	106125249	106125250	rs113809141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.1	NR	rs113809141-T	0.02265	1E-8	(DPP7)	0.1146	NR unit increase	Illumina [1671387] (imputed)	N
1395	chr1	106237117	106237118	rs1086512	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p21.1	NR	rs1086512-?	NR	4E-9				Affymetrix [NR]	N
1395	chr1	106276335	106276336	rs790960	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p21.1	NR	rs790960-G	0.0122	2E-8	(EIF2B1)	0.01989	NR unit increase	Illumina [1671387] (imputed)	N
1396	chr1	106339484	106339485	rs1163518	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	1p21.1	NR	rs1163518-C		7E-6		0.0815	[0.046-0.117] SD units decrease	NR [10700000] (imputed)	N
1396	chr1	106375544	106375545	rs116588053	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1p21.1		rs116588053-G	0.982532	1E-6		0.049368	[0.03-0.069] unit increase	Illumina [13900000] (imputed)	N
1396	chr1	106413665	106413666	rs79699878	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1p21.1		rs79699878-A	NR	4E-7		4.6878	[2.92-6.46] unit increase	Illumina [NR] (imputed)	N
1396	chr1	106430286	106430287	rs11184708	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	1p21.1	CDK4PS, LOC727839	rs11184708-T	0.13	2E-6	(Hispanic, ever vs never smoking)	0.03	[0.02-0.04] unit increase	Affymetrix [706791]	N
1397	chr1	106495494	106495495	rs41277636	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01677	rs41277636-?	NR	4E-9	(male)	2.91605	[NR] unit increase	Affymetrix [NR] (imputed)	N
1397	chr1	106514614	106514615	rs116672087	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1p21.1		rs116672087-A	0.984349	8E-7		0.0526202	[0.032-0.073] unit increase	Illumina [13900000] (imputed)	N
1397	chr1	106524763	106524764	rs114590856	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs114590856-T	0.128	8E-8		0.092	[0.058-0.126] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1398	chr1	106640942	106640943	rs12408810	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	1p21.1	PRMT6	rs12408810-C	0.87	9E-6		1.25	[1.13-1.38]	Affymetrix [~ 2000000] (imputed)	N
1398	chr1	106678763	106678764	rs11184769	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p21.1	NR	rs11184769-?	NR	9E-9				Affymetrix [NR]	N
1399	chr1	106729764	106729765	rs7545163	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p21.1	NTNG1	rs7545163-?	NR	8E-6	(TAG 44:1)	1.3612442	[0.76-1.96] unit increase	Affymetrix [at least 2500000] (imputed)	N
1400	chr1	106835942	106835943	rs1330225	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	1p21.1	PRMT6	rs1330225-C	0.01	7E-9	(MAP, during intervention)	5.16	[3.42-6.90] mmHg decrease	Affymetrix [2216774] (imputed)	N
1400	chr1	106835942	106835943	rs1330225	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	1p21.1	PRMT6	rs1330225-C	0.01	1E-8	(DBP, during intervention)	5.48	[3.60-7.36] mmHg decrease	Affymetrix [2216774] (imputed)	N
1400	chr1	106838538	106838539	rs7555693	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	1p21.1	PRMT6	rs7555693-A	NR	1E-6				NR [NR] (imputed)	N
1401	chr1	106969510	106969511	rs12094148	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	High-sensitivity cardiac troponin T levels	3,783 Japanese ancestry individuals	898 Japanese ancestry individuals	1p21.1	NR	rs12094148-T	0.059	3E-6		0.041	[0.023-0.059] unit increase	Illumina [7151284] (imputed)	N
1401	chr1	106971563	106971564	rs9435414	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	HIgh-sensitivity cardiac troponin T levels (high vs low)	967 Japanese ancestry high hs-cTnT individuals, 2,816 Japanese ancestry low hs-cTnT individuals	190 Japanese ancestry high hs-cTnT individuals, 708 Japanese ancestry low hs-cTnT individuals	1p21.1	NR	rs9435414-C	0.071	2E-6		0.077	[0.046-0.108] unit increase	Illumina [7151284] (imputed)	N
1401	chr1	107052444	107052445	rs112416405	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p21.1	RP11-478L17.1	rs112416405-A	0.0057	4E-6		0.2719	[0.16-0.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1402	chr1	107163441	107163442	rs11184940	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs11184940-T	0.8557	6E-12		0.1593	[0.11-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1402	chr1	107163441	107163442	rs11184940	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p21.1		rs11184940-T	0.8462	9E-18		0.1316	[0.1-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1402	chr1	107163441	107163442	rs11184940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs11184940-C	0.837818	8E-12		0.130014	[0.093-0.167] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1402	chr1	107163978	107163979	rs4256842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.1	NR	rs4256842-T	0.710618	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
1402	chr1	107175909	107175910	rs10785795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p21.1	NR	rs10785795-T	0.529222	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
1402	chr1	107175909	107175910	rs10785795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p21.1	NR	rs10785795-G	0.876744	2E-14		0.158611	[0.12-0.2] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1402	chr1	107185224	107185225	rs11184946	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p21.1	LOC126987/PRMT6	rs11184946-T	0.417223	1E-10		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1402	chr1	107185224	107185225	rs11184946	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1p21.1	LOC126987/PRMT6	rs11184946-T	0.417223	9E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1402	chr1	107190061	107190062	rs6702604	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p21.1	NR	rs6702604-G	0.4157	1E-9		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1402	chr1	107195338	107195339	rs12046503	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	1p21.1	NR	rs12046503-C	0.41	7E-48		1.16	[1.14-1.18]	Affymetrix, Illumina [15838848] (imputed)	N
1402	chr1	107195338	107195339	rs12046503	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	1p21.1	PRMT6, NTNG1	rs12046503-C	0.41	3E-63		1.1363636	[1.12-1.16]	Affymetrix, Illumina [6864281] (imputed)	N
1402	chr1	107213975	107213976	rs11184959	31120506	Grassmann F	2019-05-23	JAMA Ophthalmol	Assessment of Novel Genome-Wide Significant Gene Loci and Lesion Growth in Geographic Atrophy Secondary to Age-Related Macular Degeneration.	Geographic atrophy lesion growth rate in age-related macular degeneration	935 European ancestry individuals	NA	1p21.1	NR	rs11184959-A	0.352	4E-8		0.046	[0.026-0.066] unit increase	Affymetrix [7596219] (imputed)	N
1403	chr1	107226358	107226359	rs12030991	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1p21.1	NR	rs12030991-G	NR	3E-8		0.01502	[0.0097-0.0203] unit decrease	Affymetrix [10847151] (imputed)	N
1403	chr1	107254772	107254773	rs4914984	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1p13.3	NR	rs4914984-G	0.769485235169318	1E-8		0.007657582	[0.005-0.0103] unit increase	NR [NR]	N
1403	chr1	107254772	107254773	rs4914984	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1p13.3	NR	rs4914984-G	0.769485235169318	1E-8		0.0099586295	[0.0066-0.0134] unit increase	NR [NR]	N
1403	chr1	107254772	107254773	rs4914984	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1p13.3	NR	rs4914984-G	0.769485235169318	2E-8		0.008134052	[0.0053-0.011] unit increase	NR [NR]	N
1403	chr1	107254772	107254773	rs4914984	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1p13.3	NR	rs4914984-G	0.769485235169318	1E-8		0.0063559115	[0.0042-0.0085] unit increase	NR [NR]	N
1403	chr1	107305374	107305375	rs4914930	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1p13.3	NR	rs4914930-C	0.742059716141427	7E-9		0.0060894163	[0.004-0.0081] unit increase	NR [NR]	N
1403	chr1	107313099	107313100	rs17492154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p13.3	Intergenic	rs17492154-C	0.0547	3E-10	(MTAG)	0.0247	[0.017-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1403	chr1	107313099	107313100	rs17492154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p13.3	Intergenic	rs17492154-G	0.9453	2E-9		0.0257	[0.017-0.034] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1403	chr1	107313609	107313610	rs11184985	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1p13.3	NR	rs11184985-T	0.269475	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1403	chr1	107329914	107329915	rs115128816	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p13.3	RP11-110F24.1	rs115128816-T	NR	4E-7		1.20976	[0.75-1.67] unit increase	Illumina [NR] (imputed)	N
1403	chr1	107335735	107335736	rs112359326	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	1p13.3	NR	rs112359326-C		4E-6		1.5486	[0.89-2.21] SD units increase	NR [10700000] (imputed)	N
1403	chr1	107336300	107336301	rs12097821	22197933	Hu Z	2011-12-25	Nat Genet	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls	1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls	1p13.3	PRMT6	rs12097821-?	NR	6E-10		1.25	[1.17-1.34]	Affymetrix [587347]	N
1404	chr1	107383737	107383738	rs11184994	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1p13.3	NR	rs11184994-T	NR	2E-9		6.035	z score increase	Affymetrix [10847151] (imputed)	N
1404	chr1	107383737	107383738	rs11184994	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	1p13.3	NR	rs11184994-T	0.308509	3E-8		5.55	z score increase	NR [10847151] (imputed)	N
1404	chr1	107401924	107401925	rs2316172	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.3	Intergenic	rs2316172-A	0.9031	2E-8	(MTAG)	0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr1	107430594	107430595	rs17440619	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	1p13.3	intergenic	rs17440619-?	NR	2E-6		2.79	[1.83-4.25]	Illumina [4196861] (imputed)	N
1404	chr1	107432575	107432576	rs12726652	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	1p13.3	intergenic	rs12726652-?	0.26	5E-7	(quetiapine)			Affymetrix [492900]	N
1404	chr1	107445082	107445083	rs10748496	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1p13.3		rs10748496-?	NR	7E-6		0.9509815	[0.930369507872809-0.972050150263175]	Illumina [7827597] (imputed)	N
1404	chr1	107452529	107452529	rs71092085	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	1p13.3		rs71092085-?	NR	5E-6		0.2266627	[0.13-0.32] unit increase	Illumina [9906551] (imputed)	N
1404	chr1	107452529	107452529	rs71092085	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	1p13.3		rs71092085-?	NR	2E-6		0.2537112	[0.15-0.36] unit increase	Illumina [9901720] (imputed)	N
1404	chr1	107463429	107463430	rs115579450	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	1p13.3	NR	rs115579450-T	0.01032	2E-6		0.6935	[0.41-0.98] unit increase	Illumina [10677593] (imputed)	N
1404	chr1	107463642	107463643	rs12125971	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	1p13.3	PRMT6	rs12125971-?	NR	7E-6	(High intelligence)	6.93	[3.99-9.87] unit increase	Illumina [795637]	N
1405	chr1	107542283	107542284	rs115993268	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1p13.3	PRMT6	rs115993268-T	0.9814	7E-6		0.1147	[0.065-0.165] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1405	chr1	107542283	107542284	rs115993268	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p13.3	PRMT6	rs115993268-T	0.9813	4E-6		0.1244	[0.072-0.177] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1405	chr1	107542283	107542284	rs115993268	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1p13.3	PRMT6	rs115993268-T	0.9813	4E-6		0.1244	[0.072-0.177] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1405	chr1	107546374	107546375	rs17496332	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	1p13.3	PRMT6	rs17496332-A	0.67	2E-7	(Men)	0.027	[0.017-0.037] nmol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1405	chr1	107546374	107546375	rs17496332	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	1p13.3	PRMT6	rs17496332-A	0.67	1E-11	(Men + Women)	0.028	[0.020-0.036] nmol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1405	chr1	107549244	107549245	rs2878349	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.3	intergenic	rs2878349-A	0.3106	1E-8		0.0135	[0.0088-0.0182] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1405	chr1	107563242	107563243	rs12406721	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1p13.3	NR	rs12406721-T	0.342777	2E-28		0.0332823	[0.027-0.04] unit increase	Affymetrix [16577313] (imputed)	N
1405	chr1	107563242	107563243	rs12406721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs12406721-T	0.3353	1E-8	(conditional-joint)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr1	107568464	107568465	rs61798467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p13.3		rs61798467-G	0.234326	7E-10		0.016263194	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1405	chr1	107570761	107570761	rs200443569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs200443569-TCTC,rs200443569-TCTC	0.651382	1E-8		0.0232162	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1405	chr1	107570761	107570761	rs200443569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs200443569-TCTC,rs200443569-TCTC	0.651382	1E-8		0.0232162	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1405	chr1	107570761	107570761	rs200443569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs200443569-TCTC,rs200443569-TCTC	0.651382	4E-8		0.022354	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1405	chr1	107570761	107570761	rs200443569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs200443569-TCTC,rs200443569-TCTC	0.651382	4E-8		0.022354	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1405	chr1	107572996	107572997	rs3108680	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p13.3	PRMT6	rs3108680-?	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
1405	chr1	107573564	107573565	rs2335077	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p13.3	NA	rs2335077-A	0.6448	8E-11		0.0121	[0.0084-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1405	chr1	107573564	107573565	rs2335077	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p13.3	NR	rs2335077-A	0.6448	8E-11		0.0121	[0.0084-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1405	chr1	107577831	107577832	rs4118325	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	1p13.3	intergenic	rs4118325-G	0.81	6E-7		4.17	[2.17-8.33]	Illumina [291119]	N
1405	chr1	107592958	107592959	rs1762509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p13.3		rs1762509-G	NR	2E-13		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1405	chr1	107592958	107592959	rs1762509	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p13.3	NR	rs1762509-A	0.3435	2E-9		0.015699713	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1405	chr1	107593200	107593201	rs9435340	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1p13.3		rs9435340-T	0.344	1E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1405	chr1	107593200	107593201	rs9435340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs9435340-A	0.6615	6E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr1	107593200	107593201	rs9435340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.3	Intergenic	rs9435340-A	0.6615	3E-9	(MTAG)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr1	107596442	107596443	rs1730851	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs1730851-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p13.3	NR	rs2232016-T	NR	1E-10		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	1p13.3	NR	rs2232016-T	NR	1E-10		0.0197	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1p13.3	NR	rs2232016-T	NR	6E-37		0.0387	[0.033-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs2232016-T	NR	4E-11		0.0192	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p13.3	NR	rs2232016-T	NR	4E-12		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1405	chr1	107599917	107599918	rs2232016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p13.3		rs2232016-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1405	chr1	107605610	107605611	rs1730865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p13.3	NR	rs1730865-G	0.345209	8E-127		0.027531	[0.025-0.03] unit increase	Affymetrix [16582621] (imputed)	N
1405	chr1	107605610	107605611	rs1730865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p13.3	NR	rs1730865-G	0.345209	5E-98		0.0260475	[0.024-0.029] unit increase	Affymetrix [16582614] (imputed)	N
1405	chr1	107607035	107607035	rs3032555	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p13.3	NR	rs3032555-?		2E-9		0.0137924	[0.0093-0.0183] unit increase	Affymetrix [19400418] (imputed)	N
1405	chr1	107607035	107607035	rs3032555	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p13.3	NR	rs3032555-T	0.341565	4E-9		0.0175831	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1405	chr1	107607036	107607037	rs1977658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p13.3		rs1977658-G	NR	1E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1405	chr1	107607036	107607037	rs1977658	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p13.3	PRMT6	rs1977658-T	0.343121	3E-8		0.00810079	[0.0053-0.0109] unit increase	Affymetrix [12370749]	N
1405	chr1	107607036	107607037	rs1977658	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p13.3	NR	rs1977658-T	0.344082	2E-27		0.0145824	[0.012-0.017] unit increase	Affymetrix [16578495] (imputed)	N
1406	chr1	107614002	107614003	rs1730862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p13.3	NR	rs1730862-G	0.341827	2E-73		0.0227367	[0.02-0.025] unit increase	Affymetrix [16585854] (imputed)	N
1406	chr1	107614002	107614003	rs1730862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p13.3	NR	rs1730862-G	0.341827	1E-45		0.0208416	[0.018-0.024] unit increase	Affymetrix [16585866] (imputed)	N
1406	chr1	107616640	107616641	rs9435341	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	1p13.3		rs9435341-T	0.34	1E-122		0.046	nmol/L increase	NR [NR] (imputed)	N
1406	chr1	107616640	107616641	rs9435341	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1p13.3		rs9435341-T	0.34	7E-97				NR [NR] (imputed)	N
1406	chr1	107616640	107616641	rs9435341	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1p13.3		rs9435341-T	0.34	2E-11		0.01	% increase	NR [NR] (imputed)	N
1406	chr1	107616640	107616641	rs9435341	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	1p13.3		rs9435341-T	0.34	3E-6		0.009	U/L increase	NR [NR] (imputed)	N
1406	chr1	107616640	107616641	rs9435341	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	1p13.3	NR	rs9435341-T	0.3388	8E-7		0.1571	[0.095-0.219] unit decrease	Illumina [10677593] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p13.3	NR	rs1730859-G	0.34322	7E-197		0.025506	[0.024-0.027] unit increase	Affymetrix [16582909] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p13.3	NR	rs1730859-G	0.34322	6E-133		0.0236575	[0.022-0.026] unit increase	Affymetrix [16582965] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.3	intergenic	rs1730859-A	0.6903	4E-14		0.0187	[0.014-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p13.3	NA	rs1730859-A	0.651	3E-12		0.012	[0.0087-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3		rs1730859-G	NR	2E-6		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr1	107617706	107617707	rs1730859	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs1730859-G	NR	9E-9		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1406	chr1	107619243	107619244	rs1730858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p13.3		rs1730858-C	NR	3E-23		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1406	chr1	107619243	107619244	rs1730858	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p13.3	PRMT6	rs1730858-T	0.348838	2E-17		0.00444818	[0.0034-0.0055] unit increase	Affymetrix [13995440] (imputed)	N
1406	chr1	107624562	107624563	rs1335055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.3		rs1335055-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1406	chr1	107627696	107627697	rs1762486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p13.3		rs1762486-A	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1406	chr1	107666941	107666942	rs76259395	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	1p13.3	NTNG1	rs76259395-A	0.03	6E-8		1.03	[1.02-1.05]	Affymetrix [7745390] (imputed)	N
1406	chr1	107678267	107678268	rs115668827	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTNG1	5,362 Icelandic ancestry individuals	NA	1p13.3		rs115668827-C	0.06064	8E-276		1.22775	[1.16-1.3] unit increase	Illumina [7506463] (imputed)	N
1406	chr1	107678267	107678268	rs115668827	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.3	NTNG1	rs115668827-G	0.94875	3E-113	(NTNG1, 5637_81_3)	1.2333077	[1.13-1.34] unit decrease	Illumina [> 1000000] (imputed)	N
1406	chr1	107678267	107678268	rs115668827	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	NTNG1	rs115668827-C	0.049	1E-70	(Netrin-G1, NTNG1.5637.81.3)	1.0	[0.88-1.12] unit increase	Affymetrix [10572788] (imputed)	N
1406	chr1	107702355	107702356	rs72979555	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p13.3	NTNG1	rs72979555-C	0.9947	9E-6		1.2546	[0.7-1.81] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1406	chr1	107738825	107738826	rs60650667	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep end time	90,515 individuals	NA	1p13.3	NTNG1	rs60650667-C	NR	1E-8		0.512	[0.34-0.69] unit increase	NR [11024754] (imputed)	N
1407	chr1	107744755	107744756	rs4915027	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p13.3	NR	rs4915027-?	NR	8E-6		0.041661	[0.023-0.06] unit decrease	Affymetrix [805426] (imputed)	N
1407	chr1	107751052	107751052	rs5776882	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs5776882-CA	0.5819	5E-10		0.0719	[0.049-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1407	chr1	107765474	107765475	rs113988676	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	1p13.3		rs113988676-T	NR	3E-6		0.14321716	[0.082-0.204] decrease	Illumina [6334277] (imputed)	N
1407	chr1	107830857	107830858	rs10494067	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	1p13.3	NTNG1	rs10494067-?	0.06	6E-6				Illumina [~ 598000]	N
1408	chr1	107885017	107885018	rs12035149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p13.3		rs12035149-G	NR	1E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1408	chr1	107886277	107886278	rs11185092	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p13.3	NR	rs11185092-A	NR	6E-8		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1408	chr1	107886277	107886278	rs11185092	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p13.3	NTNG1	rs11185092-G	0.22	3E-8		0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
1408	chr1	107907400	107907401	rs12037004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1p13.3		rs12037004-A	0.213673	2E-8		0.0203264	[0.013-0.027] unit increase	Illumina [13479924] (imputed)	N
1408	chr1	107962327	107962328	rs11185111	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p13.3	NA	rs11185111-A	0.2906	1E-11		0.0127	[0.009-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
1408	chr1	107971672	107971673	rs77848106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs77848106-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1408	chr1	107971672	107971673	rs77848106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.3		rs77848106-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1408	chr1	108001306	108001307	rs11802147	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p13.3	NA	rs11802147-A	0.6994	1E-11		0.0125	[0.009-0.016] unit increase	NR [~ 27400000] (imputed)	N
1408	chr1	108002359	108002360	rs4914945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p13.3		rs4914945-A	NR	4E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1409	chr1	108004184	108004185	rs148523506	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	1p13.3	NR	rs148523506-A	NR	8E-6	(EA)	1.81	[1.396-2.355]	Illumina [5784964] (imputed)	N
1409	chr1	108030092	108030093	rs599873	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in osteoporosis (oral bisphosphonate)	118 European ancestry cases, 1,251 European ancestry controls	NA	1p13.3		rs599873-?	NR	4E-6		2.37	[1.64-3.43]	Illumina [126146] (imputed)	N
1409	chr1	108030092	108030093	rs599873	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in cancer (i.v. bisphosphonate)	217 European ancestry cases, 2,208 European ancestry controls	109 European ancestry cases, 1,105 European ancestry controls	1p13.3		rs599873-C	0.43	8E-6		1.71	[1.35-2.16]	Illumina [126146] (imputed)	N
1409	chr1	108087824	108087825	rs501057	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p13.3	PRMT6, VAV3	rs501057-?		7E-15				Affymetrix, Illumina [NR] (imputed)	N
1409	chr1	108090428	108090429	rs10785826	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Rough skin frequency	1,108 Japanese ancestry individuals	NA	1p13.3		rs10785826-T	0.273	2E-8		0.246	[0.16-0.33] unit decrease	Illumina [6258233] (imputed)	N
1409	chr1	108091848	108091849	rs643908	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p13.3	NR	rs643908-A		6E-10		0.06	[0.04-0.08] unit increase	NR [NR]	N
1410	chr1	108178469	108178470	rs114204012	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p13.3	VAV3	rs114204012-A	NR	4E-7		1.28919	[0.8-1.78] unit increase	Illumina [NR] (imputed)	N
1410	chr1	108181595	108181596	rs10881475	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	1p13.3	NTNG1, VAV3	rs10881475-?	0.187	2E-6	(post-treatment)			Illumina [3017604] (imputed)	N
1410	chr1	108188857	108188858	rs17019602	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1p13.3	VAV3	rs17019602-G	0.19	8E-7	(EA)	1.19	[NR]	Illumina [> 1000000] (imputed)	N
1410	chr1	108188857	108188858	rs17019602	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1p13.3	VAV3	rs17019602-G	0.19	7E-9		1.17	[NR]	Illumina [> 1000000] (imputed)	N
1410	chr1	108211004	108211005	rs7541272	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	1p13.3	NR	rs7541272-G	0.02	4E-6				Illumina [1830000] (imputed)	N
1410	chr1	108229993	108229994	rs2504460	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (principal components analysis)	6,254 Latin American individuals	NA	1p13.3	VAV3	rs2504460-G	NR	1E-8		0.13	[NR] unit increase	Illumina [8703729] (imputed)	N
1410	chr1	108243837	108243838	rs12025398	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p13.3	NR	rs12025398-T	0.5114	5E-7		0.1019	[0.062-0.142] unit decrease	Illumina [up to 1980188] (imputed)	N
1410	chr1	108243850	108243851	rs12043814	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p13.3	NR	rs12043814-T	0.4883	4E-7		0.1022	[0.063-0.142] unit increase	Illumina [up to 1980188] (imputed)	N
1411	chr1	108302921	108302922	rs12142335	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	1p13.3	VAV3	rs12142335-A	0.004	8E-6	(Dominant model)	9.713	[3.175-29.71]	Illumina [733202]	N
1411	chr1	108322534	108322535	rs7521681	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	1p13.3	VAV3	rs7521681-A		7E-7		1.1491	[1.09-1.2]	Illumina [up to 4972397] (imputed)	N
1411	chr1	108323882	108323883	rs17556028	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1p13.3	VAV3, VAV3-AS1	rs17556028-T	NR	4E-6	(sleep latency)	0.2356	[0.14-0.34] unit increase	Affymetrix [7141204] (imputed)	N
1411	chr1	108336532	108336533	rs17020055	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	1p13.3	VAV3	rs17020055-?	NR	3E-22		1.225	[1.18-1.28]	Illumina [13676411] (imputed)	N
1411	chr1	108337107	108337108	rs17484960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p13.3		rs17484960-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1411	chr1	108343086	108343087	rs7537605	25429627	Oryoji D	2014-11-27	J Clin Endocrinol Metab	Identification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves' disease.	Hashimoto thyroiditis versus Graves' disease	263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves' disease cases	181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves' disease cases	1p13.3	VAV3	rs7537605-?	0.277	4E-8		1.77	[1.44-2.17]	Illumina [546173]	N
1411	chr1	108355718	108355719	rs78495697	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	1p13.3	VAV3	rs78495697-T	0.09	3E-14		0.316	[0.24-0.4] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1411	chr1	108356819	108356820	rs12126655	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Plasma thyroid-stimulating hormone levels	2,789 Korean ancestry individuals	829 Korean ancestry individuals	1p13.3	VAV3	rs12126655-G	0.35	2E-8		0.138	[0.089-0.187] uIU/L increase	Affymetrix [1418709] (imputed)	N
1411	chr1	108357390	108357391	rs17020122	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1p13.3	VAV3	rs17020122-T	0.0908714036104047	2E-43		0.1124	[0.096-0.128] SD increase	Illumina [22400000] (imputed)	N
1411	chr1	108359504	108359505	rs4915076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p13.3		rs4915076-C	NR	8E-43		0.1912	[0.16-0.22] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1411	chr1	108359504	108359505	rs4915076	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p13.3	VAV3	rs4915076-C	0.0891965	9E-45		0.22387174	[0.19-0.26] unit increase	Affymetrix [7288503] (imputed)	N
1411	chr1	108359504	108359505	rs4915076	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	1p13.3	VAV3	rs4915076-T	0.7	7E-8		1.34	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1411	chr1	108359504	108359505	rs4915076	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	1p13.3	VAV3	rs4915076-T	0.7	8E-8		1.33	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1411	chr1	108362169	108362171	rs78765971	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p13.3	VAV3	rs78765971-G	0.09	4E-52		1.25	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1411	chr1	108362170	108362172	rs371058848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.3		rs371058848-G	NR	2E-51		0.2444	[0.21-0.28] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1411	chr1	108366015	108366016	rs4915077	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	1p13.3	VAV3	rs4915077-C	0.084	8E-10		1.302	[1.20-1.41]	Illumina [870065]	N
1411	chr1	108369482	108369483	rs17020139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.3		rs17020139-A	NR	3E-18		0.2134	[0.17-0.26] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
1411	chr1	108369482	108369483	rs17020139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.3		rs17020139-?	NR	4E-50				NR [~ 8900000] (imputed)	N
1411	chr1	108374874	108374875	rs10494079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	1p13.3		rs10494079-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1411	chr1	108375288	108375289	rs17020149	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	1p13.3	NR	rs17020149-A	0.08	3E-6				Illumina [6479975] (imputed)	N
1411	chr1	108393717	108393718	rs72707744	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1p13.3	NR	rs72707744-?	NR	1E-7		3.6972	[2.34-5.05] unit decrease	Illumina [5779266] (imputed)	N
1411	chr1	108393717	108393718	rs72707744	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1p13.3	NR	rs72707744-?	NR	9E-8		3.6972	[2.34-5.05] unit decrease	Illumina [5779266] (imputed)	N
1411	chr1	108394518	108394519	rs34005895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p13.3	VAV3	rs34005895-T	0.74761	7E-10		0.015698109	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1412	chr1	108397321	108397322	rs189766265	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1p13.3	VAV3	rs189766265-T	0.0021	2E-7		1.7614	[1.09-2.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1412	chr1	108399494	108399495	rs13353016	32627186	Man-Choi Ho A	2020-07-05	Clin Pharmacol Ther	Mood Stabilizing Antiepileptic Treatment Response in Bipolar Disorder: A Genome-Wide Association Study.	Response to antiepileptic mood-stabilizing treatment in bipolar disorder	199 European ancestry cases	NA	1p13.3	VAV3	rs13353016-T	0.028	2E-6		4.7	NR unit decrease	Illumina [7368687] (imputed)	N
1412	chr1	108436246	108436247	rs345297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.3	NR	rs345297-A	0.283743	1E-13		0.115083	[0.085-0.145] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1412	chr1	108436246	108436247	rs345297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.3	NR	rs345297-A	0.2778	5E-15		0.128792	[0.097-0.161] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1412	chr1	108445793	108445794	rs12083204	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.3	SLC25A24	rs12083204-?	NR	2E-7	(histidine)	0.23814233	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1412	chr1	108448132	108448133	rs345299	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs345299-A	0.9077	4E-18		0.1674	[0.13-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1412	chr1	108484631	108484632	rs1020812	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.3	SLC25A24	rs1020812-?	NR	6E-6	(asymmetric dimethylarginine)	0.20737495	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1412	chr1	108495110	108495111	rs34544361	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.3	NR	rs34544361-C	0.0784	3E-8	(COL18A1)	0.03156	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr1	108512146	108512147	rs436129	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1p13.3	VAV3, VAV3-AS1	rs436129-G	0.795	4E-6		1.0694042		NR [9372253] (imputed)	N
1412	chr1	108518821	108518822	rs1807096	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1p13.3	VAV3-AS1	rs1807096-A	0.9805	4E-6		0.1604	[0.092-0.228] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1412	chr1	108527280	108527281	rs1350629	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs1350629-T	0.8372	1E-9		0.1399	[0.095-0.185] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1413	chr1	108578181	108578182	rs1777451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p13.3		rs1777451-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1413	chr1	108583160	108583161	rs76827930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p13.3	NR	rs76827930-C	NR	1E-9		0.0329	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1413	chr1	108584102	108584103	rs12409794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p13.3	Intergenic	rs12409794-A	0.089	4E-6		0.016	unit increase	Illumina [NR] (imputed)	N
1413	chr1	108584102	108584103	rs12409794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p13.3	Intergenic	rs12409794-A	0.09	7E-8		0.09	NR unit increase	Illumina [NR] (imputed)	N
1413	chr1	108587457	108587458	rs4423038	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p13.3	Intergenic	rs4423038-A	0.914	2E-6		0.079	NR unit increase	Illumina [NR] (imputed)	N
1413	chr1	108588583	108588584	rs17020762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.3		rs17020762-G	0.04642	9E-10		0.031948373	[0.022-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1413	chr1	108592548	108592549	rs17020764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p13.3		rs17020764-C	NR	9E-9		0.0314	[0.021-0.042] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1413	chr1	108595441	108595442	rs1113500	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1p13.3	NR	rs1113500-G		2E-6		0.1174	[0.07-0.165] SD units decrease	NR [10700000] (imputed)	N
1413	chr1	108601181	108601182	rs140434246	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	1p13.3		rs140434246-?	NR	7E-6		0.7670103	[0.43-1.1] unit decrease	Illumina [9875426] (imputed)	N
1413	chr1	108601281	108601282	rs12121801	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1p13.3	Intergenic	rs12121801-T	0.905	5E-6		0.073	NR unit decrease	Illumina [NR] (imputed)	N
1413	chr1	108612929	108612930	rs142765674	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	1p13.3	intergenic	rs142765674-G	0.004	1E-8		2.196	NR	Affymetrix, Illumina [39127678] (imputed)	N
1413	chr1	108657357	108657357	rs33960734	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p13.3	NR	rs33960734-ATT	0.8248	5E-6	(EA)	0.0375	[0.021-0.054] unit decrease	Illumina [~ 11800000] (imputed)	N
1413	chr1	108657380	108657381	rs12409643	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1p13.3	intergenic	rs12409643-T	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1414	chr1	108662071	108662072	rs17021001	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1p13.3	NR	rs17021001-?		4E-6				Illumina [4322238] (imputed)	N
1414	chr1	108673404	108673405	rs2000260	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	1p13.3	SLC25A24	rs2000260-A	0.57	7E-7		1.32	[NR]	Illumina [1468075]	N
1414	chr1	108680061	108680062	rs522705	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	1p13.3		rs522705-?	NR	8E-6		0.24	[0.13-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1414	chr1	108737585	108737586	rs476386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p13.3		rs476386-T	NR	8E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1414	chr1	108737585	108737586	rs476386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p13.3		rs476386-T	NR	2E-15		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1414	chr1	108737585	108737586	rs476386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs476386-T	0.45272	6E-21				Affymetrix, Illumina [24649327] (imputed)	N
1414	chr1	108738779	108738780	rs12118280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p13.3	SLC25A24	rs12118280-C	0.234	4E-10		0.02670767	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108742122	108742123	rs547364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p13.3	SLC25A24	rs547364-G	0.464307	5E-15		0.017323477	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1414	chr1	108742122	108742123	rs547364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p13.3	SLC25A24	rs547364-G	0.464352	7E-18		0.01907674	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1414	chr1	108742122	108742123	rs547364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p13.3	NR	rs547364-G	0.463094	6E-19		0.016368	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1414	chr1	108742122	108742123	rs547364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs547364-G	0.458171	1E-23				Affymetrix, Illumina [23114412] (imputed)	N
1414	chr1	108742122	108742123	rs547364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p13.3	NR	rs547364-G	0.463322	2E-24		0.019614	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1414	chr1	108742122	108742123	rs547364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.3		rs547364-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p13.3	SLC25A24	rs663045-C	0.534365	2E-10		0.014071057	[0.0097-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1414	chr1	108743058	108743059	rs663045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p13.3	SLC25A24	rs663045-C	0.534335	1E-17		0.019023579	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5335	6E-10		0.02226758	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5334	4E-11		0.02372201	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5334	6E-11		0.02353011	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5334	7E-11		0.02342686	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5335	4E-10		0.02248371	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108743058	108743059	rs663045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p13.3	SLC25A24	rs663045-C	0.5334	5E-11		0.02368156	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr1	108744933	108744934	rs828999	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p13.3	SLC25A24	rs828999-A	0.5339	6E-9		0.02076806	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr1	108995533	108995534	rs61797102	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs61797102-C	0.5803	4E-14		0.0942	[0.07-0.119] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1416	chr1	109029163	109029164	rs12745191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p13.3	NR	rs12745191-C	0.734455	6E-11		0.014631	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1417	chr1	109091697	109091698	rs72693495	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	1p13.3	NR	rs72693495-G		7E-6		0.4483	[0.24-0.65] SD units decrease	NR [10700000] (imputed)	N
1417	chr1	109113776	109113777	rs77335236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs77335236-G	NR	1E-11		0.0366	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1418	chr1	109242055	109242056	rs111751551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs111751551-A	NR	4E-9		0.0681	[0.046-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1418	chr1	109242055	109242056	rs111751551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs111751551-A	NR	6E-15		0.0902	[0.068-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1418	chr1	109255512	109255513	rs3006864	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	1p13.3	PRPF38B	rs3006864-?	NR	8E-6				Affymetrix [753382]	N
1419	chr1	109322295	109322296	rs75919641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs75919641-C	NR	1E-11		0.0616	[0.044-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1419	chr1	109322295	109322296	rs75919641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs75919641-C	NR	5E-15		0.0713	[0.053-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1419	chr1	109366369	109366370	rs7522260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.3		rs7522260-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1419	chr1	109392836	109392837	rs1277203	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	1p13.3	AKNAD1	rs1277203-A	0.626	9E-6	(Recessive model)	1.615	[1.243-2.098]	Illumina [733202]	N
1419	chr1	109417678	109417679	rs7523050	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	1p13.3	AKNAD1, STXBP3, GPSM2, CLCC1	rs7523050-A	0.14	5E-6	(multivariate)			Illumina [319818]	N
1419	chr1	109417678	109417679	rs7523050	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	1p13.3	AKNAD1, STXBP3, GPSM2, CLCC1	rs7523050-A	0.14	4E-6	(univariate, lower trunk)			Illumina [319818]	N
1419	chr1	109417678	109417679	rs7523050	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	1p13.3	AKNAD1, STXBP3, GPSM2, CLCC1	rs7523050-A	0.14	1E-6	(univariate, leg)			Illumina [319818]	N
1419	chr1	109430059	109430060	rs78695355	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	1p13.3	NR	rs78695355-C		9E-6		0.1876	[0.1-0.27] SD units increase	NR [10700000] (imputed)	N
1420	chr1	109468457	109468458	rs541155877	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p13.3	AKNAD1	rs541155877-C	0.987507	6E-10		0.0692084	[0.047-0.091] unit increase	Affymetrix [NR] (imputed)	N
1420	chr1	109475447	109475448	rs77134701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs77134701-C	NR	5E-10		0.0362	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1420	chr1	109500242	109500243	rs114508355	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	1p13.3	CLCC1	rs114508355-C	NR	9E-6		0.46	[0.26-0.66] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1421	chr1	109612805	109612806	rs2358956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs2358956-C	NR	2E-9		0.0296	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109612805	109612806	rs2358956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs2358956-C	NR	1E-14		0.0382	[0.029-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109612805	109612806	rs2358956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs2358956-C	NR	6E-22		0.0476	[0.038-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109615480	109615481	rs72986845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs72986845-A	0.864446	5E-8		0.0321459	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1421	chr1	109615480	109615481	rs72986845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1p13.3		rs72986845-A	0.864446	4E-8		0.0324133	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1421	chr1	109615480	109615481	rs72986845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs72986845-A	0.864446	2E-8		0.032924	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1421	chr1	109615480	109615481	rs72986845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs72986845-A	0.864446	2E-8		0.0332925	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1421	chr1	109615480	109615481	rs72986845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs72986845-A	0.864446	1E-8		0.0335721	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1421	chr1	109616549	109616550	rs561096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs561096-G	0.864441	2E-8		0.0330253	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1421	chr1	109627072	109627073	rs112426331	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	TMEM167B	rs112426331-G	0.957297	3E-11		0.0344284	[0.024-0.045] unit increase	Affymetrix [NR] (imputed)	N
1421	chr1	109633255	109633256	rs521734	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs521734-C	0.8513	2E-22		0.154	[0.12-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1421	chr1	109633972	109633973	rs180029	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1p13.3	TMEM167B	rs180029-C	0.830731	3E-24		0.00293736	[0.0023-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
1421	chr1	109634512	109634513	rs3768500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p13.3	NR	rs3768500-G	NR	2E-14		0.0329	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109637228	109637229	rs551001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p13.3		rs551001-G	NR	2E-16		0.0246	[0.019-0.03] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1421	chr1	109641258	109641259	rs538694	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1p13.3	TMEM167B, C1orf194	rs538694-A	0.83	1E-12		7.1	z-score increase	Affymetrix [4311822] (imputed)	N
1421	chr1	109686966	109686967	rs72701021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs72701021-T	NR	2E-14		0.0315	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109686966	109686967	rs72701021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs72701021-T	NR	9E-20		0.0373	[0.029-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109686966	109686967	rs72701021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs72701021-T	NR	3E-27		0.0444	[0.036-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109704360	109704361	rs679224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs679224-G	NR	5E-10		0.0204	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109704360	109704361	rs679224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs679224-G	NR	6E-13		0.0236	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109704360	109704361	rs679224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs679224-G	NR	8E-18		0.0282	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr1	109704524	109704525	rs74920406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs74920406-T	NR	6E-10		0.0359	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109704524	109704525	rs74920406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs74920406-T	NR	1E-12		0.0413	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr1	109704978	109704979	rs676441	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs676441-A	0.1543	1E-12		0.1609	[0.12-0.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109708222	109708223	rs60481745	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	1p13.3	Intergenic	rs60481745-A	0.1	4E-6		0.37	[0.22-0.53] unit increase	NR [~ 38000000] (imputed)	N
1422	chr1	109710506	109710507	rs61797053	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1p13.3	KIAA1324	rs61797053-A	NR	2E-6	(WAP, Cases)	0.67	[0.4-0.94] unit increase	Illumina [7600000] (imputed)	N
1422	chr1	109725403	109725404	rs188608977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	KIAA1324	rs188608977-G	0.989419	2E-9		0.0619017	[0.042-0.082] unit decrease	Affymetrix [NR] (imputed)	N
1422	chr1	109737062	109737063	rs2359246	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	1p13.3	KIAA1324	rs2359246-G	0.02	8E-6		0.269	[0.15-0.39] unit decrease	Illumina [544877]	N
1422	chr1	109752203	109752204	rs604500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs604500-C	NR	1E-12		0.0196	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109752203	109752204	rs604500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs604500-C	NR	1E-16		0.023	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109752203	109752204	rs604500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs604500-C	NR	3E-21		0.0262	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109754717	109754718	rs17643426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs17643426-G	NR	3E-10		0.0413	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109757294	109757295	rs4970829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs4970829-A	NR	2E-103		0.101	[0.092-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109757294	109757295	rs4970829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs4970829-A	NR	3E-136		0.1164	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109757294	109757295	rs4970829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs4970829-A	NR	5E-192		0.1387	[0.13-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109776284	109776285	rs35271870	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	1p13.3	NR	rs35271870-T	0.912531	8E-304		0.124867	[0.12-0.13] unit increase	Affymetrix [15000001]	N
1422	chr1	109777763	109777764	rs114166723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs114166723-A	NR	4E-11		0.0546	[0.038-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109777763	109777764	rs114166723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs114166723-A	NR	2E-13		0.0609	[0.045-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109777763	109777764	rs114166723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs114166723-A	NR	8E-13		0.0594	[0.043-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109789794	109789795	rs585362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs585362-T	NR	2E-93		0.0669	[0.06-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109789794	109789795	rs585362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs585362-T	NR	8E-130		0.0792	[0.073-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109789794	109789795	rs585362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs585362-T	NR	6E-191		0.0964	[0.09-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109789794	109789795	rs585362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p13.3	NR	rs585362-T	NR	1E-13		0.0255	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109793076	109793077	rs62623708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs62623708-A	NR	5E-11		0.102	[0.072-0.132] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109793076	109793077	rs62623708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs62623708-A	NR	6E-17		0.1301	[0.1-0.161] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109796756	109796757	rs596773	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs596773-?	NR	2E-19		2.193	[1.71-2.67] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109796756	109796757	rs596773	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p13.3	PSRC1	rs596773-?	NR	1E-16		1.865	[1.38-2.35] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109797762	109797763	rs6693893	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p13.3	CELSR2	rs6693893-T	0.964699	3E-40		0.0749332	[0.064-0.086] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109798913	109798914	rs6680227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs6680227-A	NR	2E-44		0.0909	[0.078-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109798913	109798914	rs6680227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs6680227-A	NR	3E-63		0.1093	[0.097-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109798913	109798914	rs6680227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs6680227-A	NR	5E-83		0.1259	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109798913	109798914	rs6680227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p13.3	NR	rs6680227-A	NR	4E-10		0.0428	[0.029-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109801120	109801121	rs684138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs684138-T	NR	2E-21		0.0379	[0.03-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109801120	109801121	rs684138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs684138-T	NR	2E-27		0.0432	[0.035-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109801120	109801121	rs684138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs684138-T	NR	2E-35		0.0497	[0.042-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109801344	109801345	rs75237799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs75237799-T	NR	8E-28		0.1165	[0.096-0.137] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109801344	109801345	rs75237799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs75237799-T	NR	2E-38		0.1381	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109801344	109801345	rs75237799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs75237799-T	NR	2E-57		0.1705	[0.15-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109806833	109806834	rs6698843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs6698843-T	NR	6E-105		0.0523	[0.048-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109806833	109806834	rs6698843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs6698843-T	NR	1E-139		0.0605	[0.056-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109806833	109806834	rs6698843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs6698843-T	NR	2E-205		0.0737	[0.069-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1422	chr1	109806833	109806834	rs6698843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p13.3	NR	rs6698843-T	NR	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	CELSR2	rs6657811-A	0.870063	4E-374		0.127747	[0.12-0.13] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1p13.3	CELSR2	rs6657811-?	NR	1E-277		0.1339	[0.13-0.14] unit decrease	Affymetrix [5701386] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs6657811-?	NR	3E-12		4.145564	[2.98-5.31] unit decrease	Illumina [32003504] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs6657811-?	NR	3E-15		4.205141	[3.16-5.25] unit decrease	Illumina [31808917] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	NR	2E-54		0.11	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	0.905	8E-7	(Hispanic)	0.128	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	0.88	2E-47	(EA)	0.109	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	NR	3E-85		0.142	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	0.905	2E-7	(Hispanic)	0.135	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	0.88	5E-77	(EA)	0.143	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	NR	4E-10		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs6657811-A	0.88	2E-10	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109807282	109807283	rs6657811	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	1p13.3	CELSR2, SORT1	rs6657811-T	0.12	2E-9		0.057	[0.039-0.075] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1422	chr1	109813509	109813510	rs41279716	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs41279716-?	NR	5E-20		2.32	[1.83-2.81] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109813509	109813510	rs41279716	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p13.3	PSRC1	rs41279716-?	NR	7E-19		2.198	[1.7-2.69] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109814879	109814880	rs4970834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1p13.3		rs4970834-T	NR	2E-11		0.0655	[0.046-0.085] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1422	chr1	109814879	109814880	rs4970834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p13.3		rs4970834-T	NR	2E-11		0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1422	chr1	109814879	109814880	rs4970834	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p13.3	CELSR2	rs4970834-C	0.813361	2E-336		0.105228	[0.1-0.11] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109814879	109814880	rs4970834	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p13.3	CELSR2	rs4970834-T	0.18364	8E-9		0.061627656	[0.041-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
1422	chr1	109814879	109814880	rs4970834	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p13.3	CELSR2	rs4970834-T	0.185684	5E-13		0.056275744	[0.041-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
1422	chr1	109815251	109815252	rs611917	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.3	CELSR2	rs611917-A	0.6818	1E-300		0.1122	[0.11-0.12] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1422	chr1	109816863	109816863	rs552693039	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	1p13.3		rs552693039-?	0.181	4E-12		0.004251	unit increase	NR [6200000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs7528419-A	0.777837	2E-15		0.0387271	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p13.3		rs7528419-A	0.777846	2E-27		0.0532758	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p13.3		rs7528419-A	0.777837	3E-26		0.0522365	[0.043-0.062] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2G12B	5,358 Icelandic ancestry individuals	NA	1p13.3		rs7528419-G	0.2161	4E-54		0.343027	[0.3-0.39] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	1p13.3		rs7528419-A	0.78	2E-12		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.3		rs7528419-G	NR	2E-10		0.1111	[0.077-0.145] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p13.3		rs7528419-G	NR	2E-30		0.0246	[0.02-0.029] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p13.3		rs7528419-G	0.071910678	3E-29		0.20288976	[0.17-0.24] unit decrease	Illumina [13429980] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p13.3	CELSR2	rs7528419-?		3E-77		0.1017	[0.091-0.112] unit decrease	Illumina [31500000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	1p13.3	CELSR2	rs7528419-?	NR	5E-6		4.547	NR unit increase	Illumina [up to 1520000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	1p13.3	CELSR2	rs7528419-?	NR	5E-7		5.046	NR unit increase	Illumina [up to 1520000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	1p13.3	CELSR2	rs7528419-?	NR	5E-6		4.546	NR unit increase	Illumina [up to 1520000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1p13.3	NR	rs7528419-?	NR	9E-32	(GRN)			Illumina [~ 4000000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1p13.3		rs7528419-?	NR	8E-19		0.0215389	[0.017-0.026] unit increase	NR [6912294] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1p13.3		rs7528419-A	0.775329	2E-17		0.02	[0.016-0.024] unit increase	NR [7250403] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1p13.3	NR	rs7528419-G	0.224958	2E-16		0.019031	[0.014-0.024] unit increase	Affymetrix [16668957] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol percent change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p13.3	SORT1	rs7528419-G	0.198	4E-6		0.046	[0.026-0.066] unit decrease	Affymetrix [13250765] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p13.3	SORT1	rs7528419-G	0.198	1E-17		0.019	[0.015-0.023] unit decrease	Affymetrix [13250765] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p13.3	SORT1	rs7528419-G	0.198	2E-54		0.035	[0.031-0.039] unit decrease	Affymetrix [13250765] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.776985	3E-12		0.0170806	[0.012-0.022] unit decrease	NR [NR]	N
1422	chr1	109817191	109817192	rs7528419	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs7528419-?	NR	5E-146		5.382	[4.95-5.82] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	9E-11	(L_LDL_FC)	0.08466643	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	5E-11	(EstC)	0.06966631	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	2E-10	(IDL_P)	0.08051215	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	1E-10	(M_LDL_CE)	0.07346058	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	8E-9	(L_LDL_FC)	0.08534177	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	6E-9	(M_LDL_CE)	0.08638041	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	5E-8	(EstC)	0.0804521	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs7528419-?	NR	2E-8	(IDL_P)	0.083193876	NR unit decrease	Illumina [609262]	N
1422	chr1	109817191	109817192	rs7528419	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	1p13.3	CELSR2, SORT1	rs7528419-A	0.7721	3E-11		1.07	[1.05-1.09]	Affymetrix [at least 20323458] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs7528419-?	NR	1E-63		7.102672	[6.28-7.93] unit decrease	Illumina [32003504] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs7528419-?	NR	1E-78		7.088969	[6.35-7.83] unit decrease	Illumina [31808917] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	1p13.3	NR	rs7528419-?	NR	2E-6		0.6469816	[0.38-0.91] unit increase	Illumina [31978362] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	9E-35	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	6E-49	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	5E-226				Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	2E-193	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	1E-45	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	7E-51	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	6E-34	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	5E-50	(H)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	5E-213	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	2E-273				Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	3E-30	(AA)	5.925	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	3E-247		5.865	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	2E-39	(Hispanic)	7.63	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	2E-28	(Asian)	5.269	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-167	(EA)	5.767	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	2E-25	(Hispanic)	7.336	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	2E-170		5.885	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-98	(EA)	5.981	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-33	(Asian)	5.363	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-17	(AA)	5.228	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	4E-28				Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1p13.3	CELSR2	rs7528419-G	NR	2E-27	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	3E-32				Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1p13.3	CELSR2	rs7528419-G	NR	1E-28	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-10	(EA)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-10		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	8E-12		0.009142	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1p13.3	CELSR2	rs7528419-G	NR	1E-9	(EA)	0.01129	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	1p13.3	NR	rs7528419-A	0.7782	2E-309				Affymetrix, Illumina [at least 2500000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.3	CELSR2	rs7528419-A	0.7715	1E-300		0.1364	[0.13-0.14] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	NR	4E-167		0.147	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.797	1E-23	(Hispanic)	0.187	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.781	5E-134	(EA)	0.143	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.748	1E-10	(AA)	0.19	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	NR	2E-245		0.183	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.933	2E-6	(East Asian)	0.16	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.797	1E-28	(Hispanic)	0.208	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.781	3E-201	(EA)	0.18	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.748	2E-13	(AA)	0.218	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	NR	6E-15		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs7528419-A	0.781	2E-15	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein-associated phospholipase A2 activity change in response to darapladib treatment in cardiovascular disease	10,874 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	1p13.3	CELSR2	rs7528419-G	0.17701	8E-9		0.4227	[-0.5965-1.4419] unit decrease	Affymetrix, Illumina [13572687] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1p13.3	SORT1	rs7528419-A	0.782	4E-27		1.11	[1.09-1.14]	Affymetrix [9149595] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1p13.3	NR	rs7528419-?		7E-11	(SORT1)	0.1921	[NR] unit increase	Illumina [NR]	N
1422	chr1	109817191	109817192	rs7528419	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	1p13.3	CELSR2	rs7528419-A	0.792	9E-27	(Hispanic)	0.172	[0.14-0.2] unit increase	Affymetrix [at least 370268] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p13.3	SORT1	rs7528419-A	0.8	1E-15		1.11	[1.08-1.13]	Affymetrix, Illumina [8600000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1p13.3	SORT1	rs7528419-A	0.78582	2E-23		1.12	[1.10- 1.15]	Affymetrix, Illumina [8600000] (imputed)	N
1422	chr1	109817191	109817192	rs7528419	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	1p13.3	CELSR2	rs7528419-A	0.79	1E-17	(Activity concentrations)	0.035	[0.027-0.043] unit increase	Affymetrix, Illumina [2661766] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Progranulin plasma levels	400 French ancestry individuals	NA	1p13.3		rs12740374-G	NR	2E-24		0.351	[0.29-0.41] ng/mL decrease	Illumina [5201092] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	7E-61		0.0815422	[0.072-0.091] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-25		0.0491432	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-69		0.0844752	[0.075-0.094] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-32		0.0569046	[0.048-0.066] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	8E-48		0.0680218	[0.059-0.077] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-27		0.0528179	[0.043-0.062] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-23		0.048419	[0.039-0.058] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	6E-20		0.0435856	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-55		0.076007	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-14		0.0341041	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-144		0.126975	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-56		0.0777174	[0.068-0.087] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-116		0.114057	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-48		0.0715984	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-121		0.115226	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-125		0.117818	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-90		0.0967477	[0.087-0.106] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-87		0.0961379	[0.087-0.106] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-80		0.0909029	[0.082-0.1] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-107		0.108739	[0.099-0.118] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-83		0.0929169	[0.083-0.102] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778916	4E-62		0.0772128	[0.068-0.086] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-84		0.0961513	[0.086-0.106] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	7E-124		0.115691	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-61		0.0779713	[0.069-0.087] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-130		0.116224	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-64		0.080568	[0.071-0.09] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	7E-18		0.0406165	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-76		0.0887005	[0.079-0.098] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-55		0.0764455	[0.067-0.086] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-82		0.0951286	[0.085-0.105] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-185		0.143805	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-76		0.0914653	[0.082-0.101] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-127		0.119299	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-114		0.112167	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-130		0.120477	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-99		0.101234	[0.092-0.111] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-124		0.117191	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-68		0.0861586	[0.076-0.096] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-57		0.0750547	[0.066-0.084] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-23		0.0477834	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-121		0.110127	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	9E-54		0.0729239	[0.064-0.082] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-11		0.0314884	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-12		0.0310165	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-13		0.0344208	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-69		0.081325	[0.072-0.09] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-68		0.0851144	[0.076-0.095] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-35		0.0572091	[0.048-0.066] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-103		0.107157	[0.097-0.117] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-165		0.135763	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-88		0.0987901	[0.089-0.109] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-137		0.123837	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-121		0.114164	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-44		0.0689646	[0.059-0.079] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-132		0.1202	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	8E-96		0.0998514	[0.09-0.109] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	7E-66		0.0836641	[0.074-0.093] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-26		0.0477359	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-114		0.112864	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-72		0.0891177	[0.079-0.099] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	6E-99		0.105127	[0.095-0.115] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	6E-143		0.125952	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-53		0.0758495	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-132		0.121609	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-89		0.0985665	[0.089-0.108] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-124		0.117024	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-13		0.0336636	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778942	2E-37		0.0632955	[0.054-0.073] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-66		0.0840691	[0.074-0.094] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-21		0.04565	[0.036-0.055] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-37		0.0596786	[0.051-0.069] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-22		0.0459034	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-63		0.0802439	[0.071-0.09] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-23		0.0442997	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-82		0.0951484	[0.085-0.105] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	1E-113		0.112602	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-116		0.112868	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	9E-101		0.105986	[0.096-0.116] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-120		0.114708	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-72		0.0891319	[0.079-0.099] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-118		0.114407	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-80		0.0910478	[0.082-0.1] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	9E-19		0.0414643	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778942	1E-27		0.051526	[0.042-0.061] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-70		0.0855402	[0.076-0.095] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-50		0.0728653	[0.063-0.082] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-42		0.063415	[0.054-0.073] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-49		0.0710724	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-31		0.0542092	[0.045-0.063] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-11		0.0322478	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-66		0.0826854	[0.073-0.092] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	2E-26		0.0477394	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	6E-91		0.100262	[0.091-0.11] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-134		0.122581	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-109		0.10991	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-114		0.112923	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	5E-122		0.1154	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	3E-85		0.0938861	[0.084-0.103] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	4E-28		0.0532475	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1p13.3		rs12740374-G	0.778936	8E-121		0.115903	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1p13.3		rs12740374-T	NR	1E-286		0.0934	[0.088-0.098] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.3		rs12740374-T	NR	3E-23		0.1203	[0.097-0.144] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	1p13.3		rs12740374-T	NR	1E-17		0.0707	[0.055-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1p13.3		rs12740374-T	NR	2E-145		0.1623	[0.15-0.17] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1p13.3		rs12740374-T	NR	1E-410		0.1173	[0.11-0.12] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	1p13.3		rs12740374-?	NR	2E-7		0.766762	[0.694-0.848]	NR [NR] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p13.3	CELSR2	rs12740374-G	0.788431	8E-32		1.11	[1.09-1.13]	NR [8126035] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	1p13.3	CELSR2	rs12740374-G	0.777761	6E-18		1.12	[1.09-1.15]	NR [10903881] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p13.3	CELSR2	rs12740374-?		7E-104		0.1324	[0.12-0.14] unit increase	Illumina [31500000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p13.3	CELSR2	rs12740374-?		1E-7	(African American)	0.15287153	[0.097-0.209] unit decrease	Illumina [13620258] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1p13.3	CELSR2	rs12740374-?		1E-6	(EA)	0.14413212	[0.086-0.202] unit decrease	Illumina [13620258] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-T	0.2214	2E-10		0.015	[0.01-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	1p13.3		rs12740374-T	0.22	2E-18		0.0815	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p13.3	CELSR2	rs12740374-?	NR	1E-62		0.106316	[0.094-0.119] unit decrease	Illumina [4804024] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.3	CELSR2	rs12740374-T	0.221719	7E-18		0.022831036	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-G	0.778994	2E-36		0.0288626	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-G	0.779088	1E-78		0.0443235	[0.04-0.049] unit decrease	Affymetrix [NR] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p13.3	PSRC1	rs12740374-?	NR	5E-136		5.358	[4.91-5.81] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	1p13.3	PSRC1	rs12740374-?	NR	3E-9		0.006751	[0.0044-0.0091] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Total cholesterol levels	14,126 African ancestry individuals	NA	1p13.3		rs12740374-G	0.698	9E-17		0.108598	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	LDL cholesterol levels	14,126 African ancestry individuals	NA	1p13.3		rs12740374-G	0.698	2E-26		0.143343	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	1p13.3	NR	rs12740374-?	NR	1E-29		0.17	[0.14-0.2] unit decrease	Illumina [1770809] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	1p13.3	NR	rs12740374-?	NR	1E-36		0.205	[0.17-0.24] unit decrease	Illumina [1770809] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs12740374-?	NR	1E-65		7.293991	[6.46-8.13] unit decrease	Illumina [32003504] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs12740374-?	NR	8E-81		7.2666	[6.52-8.01] unit decrease	Illumina [31808917] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	1p13.3	NR	rs12740374-?	NR	6E-6		0.6266499	[0.36-0.9] unit increase	Illumina [31978362] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	1p13.3	CELSR2	rs12740374-T	0.221168	3E-20		0.07470976	[0.059-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1p13.3	CELSR2	rs12740374-T	0.219778	2E-119		0.15661827	[0.14-0.17] unit decrease	Affymetrix [7288503] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p13.3	CELSR2	rs12740374-T	0.059	4E-11		8.3697	[5.89-10.85] unit decrease	Affymetrix [at least 805769] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p13.3	CELSR2	rs12740374-T	0.059	3E-11		0.0714	[0.05-0.092] unit decrease	Affymetrix [at least 805769] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p13.3		rs12740374-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p13.3		rs12740374-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	1p13.3		rs12740374-T	0.215441066	9E-230	(GRN)	0.727792	unit decrease	Affymetrix, Illumina [8509364] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	1p13.3	CELSR2	rs12740374-T	0.222	2E-25				Affymetrix [28000000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-T	0.223	2E-23	(Carbonic anhydrase-related protein 10, CA10.13666.222.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-T	0.223	2E-18	(Four-jointed box protein 1, FJX1.7921.65.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs12740374-T	0.223	1E-14	(Hemojuvelin, HFE2.3332.57.1)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	NR	2E-168		0.148	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.798	5E-24	(Hispanic)	0.189	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.782	9E-135	(EA)	0.143	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.756	4E-11	(AA)	0.196	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	NR	2E-247		0.183	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.933	1E-6	(East Asian)	0.162	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.798	5E-29	(Hispanic)	0.21	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.782	4E-202	(EA)	0.179	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.756	3E-14	(AA)	0.227	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	NR	5E-15		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs12740374-G	0.782	3E-15	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p13.3	CELSR2, PSRC1	rs12740374-T	0.219	2E-57		0.124	[0.11-0.14] unit decrease	Affymetrix [7947838] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	1p13.3	CELSR2	rs12740374-T	0.17646	4E-39		7.44	[6.32-8.56] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	1p13.3	CELSR2	rs12740374-T	0.2288	8E-22		0.12353132	[0.098-0.149] mg/dl decrease	Illumina [24111857] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	1p13.3	SORT1	rs12740374-T	0.22	2E-22	(activity)	0.0344	[0.027-0.042] ng/ml decrease	Illumina [796174]	N
1422	chr1	109817589	109817590	rs12740374	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	1p13.3	CELSR2, PSRC1, SORT1	rs12740374-T	0.25	9E-29		0.1815	[0.15-0.21] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1422	chr1	109817589	109817590	rs12740374	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1p13.3	CELSR2, PSRC1, SORT1	rs12740374-T	0.21	2E-42		0.23	[0.19-0.27] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1422	chr1	109817837	109817838	rs660240	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	1p13.3		rs660240-T	0.215268	2E-22		0.0477737	[0.038-0.057] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817837	109817838	rs660240	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs660240-T	0.215293	2E-14		0.0370395	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817837	109817838	rs660240	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	1p13.3		rs660240-T	0.215293	2E-19		0.0431485	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817837	109817838	rs660240	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1p13.3		rs660240-T	0.215293	3E-10		0.0299432	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109817837	109817838	rs660240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.3		rs660240-C	NR	7E-23		0.1183	[0.095-0.142] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1422	chr1	109817837	109817838	rs660240	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	1p13.3	CELSR2	rs660240-C	0.79	3E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [8246881] (imputed)	N
1422	chr1	109817837	109817838	rs660240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs660240-?	NR	1E-51		6.191609	[5.39-6.99] unit increase	Illumina [32003504] (imputed)	N
1422	chr1	109817837	109817838	rs660240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs660240-?	NR	6E-65		6.259962	[5.54-6.98] unit increase	Illumina [31808917] (imputed)	N
1422	chr1	109817837	109817838	rs660240	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p13.3	CELSR2	rs660240-T	0.21541	2E-10		0.014155	[0.0098-0.0185] unit increase	NR [13737936] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	NR	4E-154		0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.321	2E-7	(AA)	0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.211	3E-126	(EA)	0.14	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.199	4E-20	(Hispanic)	0.173	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	NR	4E-227		0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.321	6E-10	(AA)	0.171	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.211	1E-189	(EA)	0.176	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.199	1E-23	(Hispanic)	0.19	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.066	6E-7	(East Asian)	0.169	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	NR	3E-15		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs660240-T	0.211	3E-15	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	1p13.3	CELSR2	rs660240-?	NR	2E-28		0.1122	[0.092-0.132] unit increase novel	Illumina [6108953] (imputed)	N
1422	chr1	109817837	109817838	rs660240	29186428	Tonjes A	2017-11-27	Hum Mol Genet	Genome-wide meta-analysis identifies novel determinants of circulating serum progranulin.	Progranulin levels	1,963 European ancestry individuals, 848 Sorbian (founder/genetic isolate) individuals	1800 European ancestry individuals	1p13.3	CELSR2, PSRC1, MYBPHL, SORT1	rs660240-C	0.784	6E-50		0.169	unit increase	Affymetrix [2069113] (imputed)	N
1422	chr1	109817837	109817838	rs660240	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	LDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	1p13.3	CELSR2	rs660240-C	0.793	1E-28	(Hispanic)	0.179	[0.15-0.21] unit increase	Affymetrix [at least 370268] (imputed)	N
1422	chr1	109817837	109817838	rs660240	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	1p13.3	CELSR2	rs660240-T	0.22	2E-22	(LDL)	0.17	[0.14-0.20] mmol/l decrease	Illumina [NR] (imputed)	N
1422	chr1	109817837	109817838	rs660240	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1p13.3	CELSR2	rs660240-A	0.21	1E-26		0.04	[0.03-0.05] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214443	2E-34		0.0594751	[0.05-0.069] unit increase	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214571	9E-31		0.0576886	[0.048-0.067] unit increase	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214577	1E-23		0.0478777	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	2E-16		0.0408162	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	7E-11		0.0307388	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	1E-10		0.0317661	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	7E-34		0.0591684	[0.05-0.069] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	3E-32		0.0580399	[0.048-0.068] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	4E-8		0.0271003	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214601	2E-27		0.0535953	[0.044-0.063] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214443	5E-18		0.04215	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214443	4E-30		0.054811	[0.045-0.064] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214571	8E-27		0.0515733	[0.042-0.061] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214901	7E-31		0.0585396	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214443	2E-28		0.0530569	[0.044-0.062] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214577	3E-10		0.0317653	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214577	1E-11		0.0342112	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214571	6E-32		0.0577675	[0.048-0.067] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p13.3		rs3832016-C	0.214901	4E-16		0.0410509	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p13.3		rs3832016-CT	NR	7E-10		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	1p13.3		rs3832016-CT	0.208	2E-30		1.21		Affymetrix [15679186] (imputed)	N
1422	chr1	109818158	109818158	rs3832016	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.3	CELSR2	rs3832016-?	0.2119	4E-29		0.0421	[0.035-0.05] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	2E-36		0.0609679	[0.051-0.07] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	1E-41		0.0656918	[0.056-0.075] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	1E-36		0.0613468	[0.052-0.071] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	2E-48		0.0715617	[0.062-0.081] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	3E-21		0.0458866	[0.036-0.055] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	3E-34		0.0596482	[0.05-0.069] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	1E-18		0.0422546	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	4E-48		0.0711037	[0.062-0.081] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	1E-23		0.0485683	[0.039-0.058] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs629301-G	0.221959	4E-28		0.0532225	[0.044-0.063] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818305	109818306	rs629301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large LDL	4,734 individuals	NA	1p13.3		rs629301-T	0.765461555	1E-12		0.170318	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818305	109818306	rs629301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	1p13.3		rs629301-T	0.765319306	1E-12		0.169923	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818305	109818306	rs629301	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	1p13.3		rs629301-T	0.765308524	4E-10		0.150275	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818305	109818306	rs629301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	1p13.3		rs629301-T	NR	1E-21		0.0683	[0.054-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1422	chr1	109818305	109818306	rs629301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	1p13.3		rs629301-T	0.928101	2E-31		0.107755	[0.09-0.126] unit increase	Illumina [13461863] (imputed)	N
1422	chr1	109818305	109818306	rs629301	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p13.3	NR	rs629301-T	0.778	9E-10		0.00158	[0.001-0.0021] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109818305	109818306	rs629301	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	1p13.3		rs629301-G	0.22	2E-57		5.8	[5.09-6.51] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1422	chr1	109818305	109818306	rs629301	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		1p13.3		rs629301-G	0.22	2E-72		6.03	[5.36-6.70] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1422	chr1	109818305	109818306	rs629301	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs629301-?	NR	7E-54		6.251673	[5.46-7.04] unit increase	Illumina [32003504] (imputed)	N
1422	chr1	109818305	109818306	rs629301	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs629301-?	NR	3E-67		6.284919	[5.57-7] unit increase	Illumina [31808917] (imputed)	N
1422	chr1	109818305	109818306	rs629301	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p13.3		rs629301-T	0.7537	1E-128		4.4616	[4.1-4.82] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs629301-T	0.776	7E-15	(Neogenin, NEO1.8900.28.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	NR	3E-164		0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.336	4E-8	(AA)	0.149	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.219	7E-135	(EA)	0.142	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.209	5E-21	(Hispanic)	0.173	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	NR	7E-242		0.18	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.336	6E-11	(AA)	0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.219	2E-202	(EA)	0.179	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.209	3E-25	(Hispanic)	0.192	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.069	2E-6	(East Asian)	0.156	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	NR	5E-15		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs629301-G	0.219	4E-15	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818305	109818306	rs629301	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	1p13.3	NR	rs629301-?	NR	1E-49				Affymetrix [NR]	N
1422	chr1	109818305	109818306	rs629301	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	1p13.3	NR	rs629301-?	NR	2E-51				Affymetrix [NR]	N
1422	chr1	109818305	109818306	rs629301	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	1p13.3	CELSR2	rs629301-T	NR	6E-132				NR [2501549] (imputed)	N
1422	chr1	109818305	109818306	rs629301	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	LDL cholesterol levels	12,685 Chinese ancestry individuals	NA	1p13.3	SORT1	rs629301-T	0.937	2E-17		0.22	[0.17-0.27] unit increase	Illumina [286795]	N
1422	chr1	109818305	109818306	rs629301	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1p13.3	SORT1	rs629301-G	0.24	5E-241		0.167	[NR] unit decrease	NR [NR] (imputed)	N
1422	chr1	109818305	109818306	rs629301	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1p13.3	SORT1	rs629301-G	0.24	2E-170		0.134	[NR] unit decrease	NR [NR] (imputed)	N
1422	chr1	109818305	109818306	rs629301	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1p13.3	CELSR2, PSRC1, SORT1	rs629301-G	0.22	1E-170		5.65	[5.24-6.06] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1422	chr1	109818305	109818306	rs629301	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1p13.3	CELSR2, PSRC1, SORT1	rs629301-G	0.22	6E-131		5.41	[4.94-5.88] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1422	chr1	109818529	109818530	rs646776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs646776-C	0.221994	3E-39		0.0639955	[0.054-0.074] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818529	109818530	rs646776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs646776-C	0.221994	7E-39		0.0638181	[0.054-0.073] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109818529	109818530	rs646776	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAT	5,360 Icelandic ancestry individuals	NA	1p13.3		rs646776-C	0.2162	1E-15		0.181306	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	1p13.3		rs646776-T	0.768691051	3E-8		0.140417	[0.091-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	1p13.3		rs646776-T	0.768691051	5E-9		0.147415	[0.098-0.197] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	1p13.3		rs646776-T	0.768691051	7E-11		0.164503	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium LDL	4,348 individuals	NA	1p13.3		rs646776-T	0.768806073	1E-10		0.162714	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	1p13.3		rs646776-T	0.768691051	1E-10		0.162763	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in IDL	4,348 individuals	NA	1p13.3		rs646776-T	0.768637828	3E-12		0.176315	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	2E-8		0.135107	[0.088-0.182] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	4E-9		0.141203	[0.094-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	5E-12		0.166355	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	7E-13		0.172449	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	4E-13		0.174283	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	2E-12		0.168757	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	2E-10		0.152903	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	1E-12		0.170395	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	4E-13		0.173942	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	2E-13		0.17569	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	3E-13		0.175149	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765383802	8E-13		0.172154	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small LDL particle concentration	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	5E-12		0.166006	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	1E-10		0.154564	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	1E-9		0.145456	[0.098-0.193] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	3E-11		0.159901	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	1E-12		0.17028	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765383802	8E-13		0.171788	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium LDL particle concentration	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	8E-13		0.172127	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	5E-13		0.173294	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	5E-11		0.157795	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	2E-11		0.161558	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	1E-12		0.170207	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765532544	9E-10		0.147377	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765390311	2E-8		0.135144	[0.088-0.182] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765700994	7E-13		0.172708	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.76558867	3E-13		0.175636	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large LDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	2E-13		0.175883	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	1p13.3		rs646776-T	0.765383802	2E-12		0.168665	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	2E-8		0.135356	[0.088-0.182] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	1p13.3		rs646776-T	0.765525982	3E-12		0.167892	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109818529	109818530	rs646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1p13.3		rs646776-T	NR	5E-28		0.1165	[0.096-0.137] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1422	chr1	109818529	109818530	rs646776	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	1p13.3	SORT1	rs646776-C	0.203	3E-16		0.02	[0.016-0.024] unit decrease	Affymetrix [13250765] (imputed)	N
1422	chr1	109818529	109818530	rs646776	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	1p13.3	PSRC1	rs646776-?	NR	1E-14		0.007286	[0.0051-0.0094] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	8E-12	(L_LDL_CE)	0.08605459	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	8E-12	(FreeC)	0.07244655	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	8E-10	(IDL_L)	0.07664053	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	7E-11	(ApoB_ApoA1)	0.043620072	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	7E-10	(S_LDL_P)	0.07252232	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	6E-11	(Serum_C)	0.06951544	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	6E-11	(S_LDL_FC)	0.07322541	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	6E-10	(M_LDL_P)	0.07378216	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-13	(S_LDL_L)	0.08476576	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-12	(L_LDL_C)	0.084428675	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-10	(L_LDL_L)	0.07691151	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	3E-11	(L_LDL_PL)	0.07379366	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-12	(M_LDL_L)	0.08232058	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-12	(IDL_FC)	0.07794061	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-10	(S_LDL_PL)	0.07105611	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-10	(L_LDL_P)	0.0697828	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	1E-9	(M_LDL_FC)	0.056941964	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	1E-9	(IDL_PL)	0.06891708	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	1E-11	(LDL_C)	0.078860395	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	9E-9	(S_LDL_FC)	0.084950484	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	9E-10	(L_LDL_P)	0.090867676	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	9E-10	(L_LDL_L)	0.090674795	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	9E-10	(L_LDL_C)	0.09078267	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	7E-9	(M_LDL_FC)	0.08574214	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	7E-8	(FreeC)	0.0799599	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	5E-8	(S_LDL_PL)	0.080304295	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	5E-8	(IDL_FC)	0.08069965	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	5E-10	(L_LDL_CE)	0.09203776	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-9	(S_LDL_P)	0.08755724	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-9	(S_LDL_L)	0.08758985	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-9	(L_LDL_PL)	0.08691303	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	4E-7	(ApoB_ApoA1)	0.074597254	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	3E-9	(M_LDL_P)	0.08847381	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	3E-9	(M_LDL_L)	0.088438444	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-8	(Serum_C)	0.08314248	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-8	(IDL_PL)	0.08269672	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	2E-8	(IDL_L)	0.08266021	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	CELSR2	rs646776-?	NR	1E-9	(LDL_C)	0.08965392	NR unit decrease	Illumina [609262]	N
1422	chr1	109818529	109818530	rs646776	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs646776-?	NR	2E-53		6.239983	[5.45-7.03] unit increase	Illumina [32003504] (imputed)	N
1422	chr1	109818529	109818530	rs646776	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs646776-?	NR	3E-67		6.302077	[5.59-7.01] unit increase	Illumina [31808917] (imputed)	N
1422	chr1	109818529	109818530	rs646776	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1p13.3		rs646776-T	0.7539	5E-128		4.4557	[4.09-4.82] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1422	chr1	109818529	109818530	rs646776	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1p13.3		rs646776-T	0.7762	2E-7	(EA)	0.008	[0.0049-0.0111] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1422	chr1	109818529	109818530	rs646776	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Total cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	1p13.3	CELSR2	rs646776-G	0.27	1E-9	(Indian)	5.42	[3.68-7.16] unit decrease	Illumina [551825]	N
1422	chr1	109818529	109818530	rs646776	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Low density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	1p13.3	CELSR2	rs646776-G	0.27	1E-13	(Indian)	5.26	[3.87-6.65] unit decrease	Illumina [551825]	N
1422	chr1	109818529	109818530	rs646776	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs646776-T	0.777	8E-211	(Granulins, GRN.4992.49.1)	0.83	[0.77-0.89] unit increase	Affymetrix [10572788] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs646776-T	0.777	2E-114	(Complement C1q tumor necrosis factor-related protein 1, C1QTNF1.6304.8.3)	0.64	[0.58-0.7] unit increase	Affymetrix [10572788] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	NR	4E-164		0.144	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.334	5E-8	(AA)	0.148	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.219	2E-134	(EA)	0.142	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.209	2E-21	(Hispanic)	0.175	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	NR	5E-242		0.18	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.334	5E-11	(AA)	0.178	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.219	1E-201	(EA)	0.178	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.209	9E-26	(Hispanic)	0.194	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.068	1E-6	(East Asian)	0.162	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	NR	3E-15		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs646776-C	0.219	4E-15	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109818529	109818530	rs646776	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	1p13.3	CELSR2	rs646776-?	NR	5E-27		0.08159	[0.067-0.096] unit increase novel	Illumina [6108953] (imputed)	N
1422	chr1	109818529	109818530	rs646776	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	1p13.3	SORT1	rs646776-T	0.78	1E-8		1.17	[1.11-1.23]	Affymetrix [9061845] (imputed)	N
1422	chr1	109818529	109818530	rs646776	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p13.3	PSRC1, CELSR2	rs646776-C	0.2183735	5E-10	(EA, Repulsive guidance molecule A)	0.3237	[0.22-0.42] unit decrease	Affymetrix [509946]	N
1422	chr1	109818529	109818530	rs646776	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p13.3	PSRC1, CELSR2	rs646776-C	0.2183735	2E-11	(EA, Catalase)	0.3359	[0.24-0.43] unit decrease	Affymetrix [509946]	N
1422	chr1	109818529	109818530	rs646776	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1p13.3	PSRC1, CELSR2	rs646776-C	0.2183735	1E-52	(Granulins)	0.7583	[0.67-0.85] unit decrease	Affymetrix [509946]	N
1422	chr1	109818529	109818530	rs646776	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	1p13.3	CELSR2	rs646776-T	NR	4E-170				NR [2501749] (imputed)	N
1422	chr1	109818529	109818530	rs646776	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	1p13.3	CELSR2	rs646776-T	NR	3E-9				NR [2501543] (imputed)	N
1422	chr1	109818529	109818530	rs646776	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1p13.3	CELSR2, SORT1	rs646776-T	0.22	2E-91		0.146	[0.13-0.16] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1422	chr1	109818529	109818530	rs646776	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1p13.3	CELSR2, SORT1	rs646776-T	0.22	2E-64		0.12	[0.11-0.13] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1422	chr1	109818529	109818530	rs646776	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	1p13.3	CELSR2, PSRC1, SORT1	rs646776-T	NR	6E-10		1.14	[1.09-1.19]	Illumina [574919]	N
1422	chr1	109818529	109818530	rs646776	21239051	Reilly MP	2011-01-14	Lancet	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Coronary artery disease	1,808 European ancestry cases, 915 European ancestry controls	10,585 European ancestry cases, 6,468 European ancestry controls	1p13.3	SORT1	rs646776-T	0.79	8E-11		1.33	[1.22-1.44]	Affymetrix, Illumina [> 2400000] (imputed)	N
1422	chr1	109818529	109818530	rs646776	21087763	Carrasquillo MM	2010-12-10	Am J Hum Genet	Genome-wide screen identifies rs646776 near sortilin as a regulator of progranulin levels in human plasma.	Progranulin levels	518 European ancestry controls	459 European ancestry controls	1p13.3	CELSR2, PSRC1, SORT1	rs646776-G	0.21	2E-30		0.18	[0.16-0.20] ng/ml decrease	Illumina [313504]	N
1422	chr1	109818529	109818530	rs646776	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1p13.3	CELSR2, PSRC1, SORT1	rs646776-C	0.19	4E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
1422	chr1	109818529	109818530	rs646776	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	CELSR2, PSRC1, SPRT1	rs646776-?	NR	4E-39	(APOB.assay, fasting)	5.251	[NR] unit decrease	Illumina [335603]	N
1422	chr1	109818529	109818530	rs646776	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	CELSR2, PSRC1, SPRT1	rs646776-?	NR	2E-53	(APOB.assay, whole)	5.205	[NR] unit decrease	Illumina [335603]	N
1422	chr1	109818529	109818530	rs646776	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	CELSR2, PSRC1, SPRT1	rs646776-?	NR	2E-27	(LDL.total, whole)	0.042	[NR] unit decrease	Illumina [335603]	N
1422	chr1	109818529	109818530	rs646776	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	1p13.3	CELSR2, PSRC1, SPRT1	rs646776-?	NR	2E-20	(LDL.total, fasting)	0.043	[NR] unit decrease	Illumina [335603]	N
1422	chr1	109818529	109818530	rs646776	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1p13.3	CELSR2, PSRC1, SORT1	rs646776-T	0.81	8E-12		1.19	[1.13-1.26]	Affymetrix [~ 2500000] (imputed)	N
1422	chr1	109818529	109818530	rs646776	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	1p13.3	CELSR2	rs646776-G	0.22	8E-23		0.16	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1422	chr1	109818529	109818530	rs646776	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	1p13.3	CELSR2	rs646776-G	0.22	9E-22		0.13	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1422	chr1	109818529	109818530	rs646776	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	1p13.3	CELSR2, PSRC1, SORT1	rs646776-G	0.21	2E-12		0.16	[0.11-0.20] mmol/l decrease	Illumina [329091]	N
1422	chr1	109818529	109818530	rs646776	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	1p13.3	PSRC1, CELSR2, SORT1	rs646776-C	0.24	3E-29		0.16	[0.14-0.18] unit decrease	Affymetrix [389878]	N
1422	chr1	109819295	109819296	rs3902354	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs3902354-?	NR	5E-20		3.744427	[2.94-4.54] unit increase	Illumina [32003504] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs3902354-?	NR	2E-25		3.77801	[3.07-4.49] unit increase	Illumina [31808917] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	NR	2E-109		0.107	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.331	2E-91	(EA)	0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.308	6E-13	(Hispanic)	0.117	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	NR	2E-161		0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.331	8E-137	(EA)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.308	7E-17	(Hispanic)	0.136	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.091	9E-7	(East Asian)	0.146	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	NR	3E-8		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs3902354-C	0.331	6E-9	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109819295	109819296	rs3902354	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Cholesterol, total	3,701 Mexican ancestry individuals	5,114 Mexican ancestry individuals, 903 Mexican ancestry individuals from 73 dyslipidemic families	1p13.3	CELSR2	rs3902354-A	NR	1E-8		0.15	[NR] unit increase	Illumina [1661241] (imputed)	N
1422	chr1	109821306	109821307	rs583104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs583104-G	0.226624	1E-29		0.0516319	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821306	109821307	rs583104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs583104-G	0.226624	1E-38		0.0598157	[0.051-0.069] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821306	109821307	rs583104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs583104-G	0.226624	3E-23		0.0450514	[0.036-0.054] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821306	109821307	rs583104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs583104-G	0.226624	2E-20		0.0420432	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821306	109821307	rs583104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs583104-G	0.226624	1E-18		0.0398763	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821306	109821307	rs583104	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small HDL	4,348 individuals	NA	1p13.3		rs583104-T	0.764886993	7E-9		0.14559	[0.096-0.195] mmol/l decrease	Illumina [7701709] (imputed)	N
1422	chr1	109821306	109821307	rs583104	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small HDL	4,734 individuals	NA	1p13.3		rs583104-T	0.761918272	2E-10		0.151772	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1422	chr1	109821306	109821307	rs583104	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	1p13.3	PSRC1	rs583104-G	0.224727	2E-16		0.07803933	[0.059-0.097] unit decrease	Affymetrix [7288503] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1p13.3		rs602633-T	0.217359	5E-9		0.0294782	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs602633-T	0.217041	4E-10		0.0303328	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs602633-T	0.217041	4E-8		0.0266672	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	1p13.3		rs602633-T	0.217041	9E-15		0.0375534	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1p13.3		rs602633-T	0.21691	6E-23		0.0494155	[0.04-0.059] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP1	5,366 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	2E-13		0.163989	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HFE2	5,359 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	7E-25		0.230093	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRN	5,355 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	7E-194		0.606578	[0.57-0.65] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FJX1	5,364 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	1E-37		0.282662	[0.24-0.33] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA10	5,366 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	9E-48		0.331718	[0.29-0.38] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF1	5,359 Icelandic ancestry individuals	NA	1p13.3		rs602633-T	0.2144	2E-29		0.240966	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1422	chr1	109821510	109821511	rs602633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1p13.3		rs602633-G	0.928625	1E-27		0.0752314	[0.062-0.089] unit increase	Illumina [13476599] (imputed)	N
1422	chr1	109821510	109821511	rs602633	33937362	Moller PL	2021-04-16	Front Cardiovasc Med	Sortilin as a Biomarker for Cardiovascular Disease Revisited.	Sortilin levels (ELISA)	1,173 European ancestry individuals	NA	1p13.3	NR	rs602633-T	0.25	2E-11			NR	Illumina [4658994] (imputed)	N
1422	chr1	109821510	109821511	rs602633	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Coronary heart disease x type 2 diabetes interaction	56,285 European ancestry coronary heart disease cases, 140,945 European ancestry controls	NA	1p13.3	SORT1	rs602633-T	0.216	4E-10				Affymetrix [at least 723305] (imputed)	N
1422	chr1	109821510	109821511	rs602633	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	1p13.3	CELSR2, PSRC1	rs602633-T	0.218	3E-6		0.0218	[0.013-0.031] unit increase	NR [up to 9000000] (imputed)	N
1422	chr1	109821510	109821511	rs602633	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	1p13.3	CLESR2, PSRC1	rs602633-T	NR	4E-9				Affymetrix [11535925] (imputed)	N
1422	chr1	109821510	109821511	rs602633	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	1p13.3	CLESR2, PSRC1	rs602633-T	0.217	3E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix [11535925] (imputed)	N
1422	chr1	109821510	109821511	rs602633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p13.3	CELSR2, PSRC1	rs602633-T	0.2343	4E-58		0.0999	[0.088-0.112] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1422	chr1	109821510	109821511	rs602633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p13.3	CELSR2, PSRC1	rs602633-T	0.2346	2E-59		0.112	[0.098-0.126] unit decrease	NR [8041861] (imputed)	N
1422	chr1	109821510	109821511	rs602633	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	1p13.3	CELSR2, PSRC1, SORT1	rs602633-T	0.199	7E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [5363770] (imputed)	N
1422	chr1	109821510	109821511	rs602633	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	1p13.3	SORT1	rs602633-?	NR	1E-8		1.1111	[1.08-1.15]	Illumina [575000] (imputed)	N
1422	chr1	109821587	109821588	rs4970835	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs4970835-?	NR	1E-16		2.085	[1.57-2.6] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109821587	109821588	rs4970835	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1p13.3	PSRC1	rs4970835-?	NR	5E-15		1.975	[1.46-2.49] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109821796	109821797	rs4970836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs4970836-G	0.226674	2E-13		0.0349405	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821796	109821797	rs4970836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs4970836-G	0.226674	5E-11		0.0313108	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821796	109821797	rs4970836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	1p13.3		rs4970836-G	0.226674	5E-14		0.0357704	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109821796	109821797	rs4970836	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	1p13.3	CELSR2, PSRC1	rs4970836-G	0.2367	3E-8				NR [7320282]	N
1422	chr1	109821796	109821797	rs4970836	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.3	CELSR2	rs4970836-A	0.771	4E-48	(Group XIIB secretory phospholipase A2-like protein, PLA2G12B.9380.2.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
1422	chr1	109822007	109822008	rs4970837	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1p13.3	PSRC1	rs4970837-T	0.67	8E-16		1.07	[1.04-1.11]	Illumina [5167567] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs1277930-G	0.227486	7E-10		0.0287658	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1p13.3		rs1277930-G	0.227481	3E-13		0.0329227	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs1277930-G	0.227486	5E-23		0.0484957	[0.039-0.058] unit increase	NR [11722792] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	1E-11		0.170371	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	4E-12		0.173733	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	2E-12		0.175955	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	3E-12		0.17465	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	4E-12		0.173656	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	2E-12		0.17533	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	1E-12		0.17775	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	1E-12		0.178207	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in IDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762268753	2E-12		0.175588	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small LDL particle concentration	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	1E-11		0.16925	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial serum total cholesterol	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	3E-10		0.157808	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very small VLDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762323441	2E-10		0.15928	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	2E-9		0.151252	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	5E-12		0.172368	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762268753	6E-12		0.171905	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium LDL particle concentration	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	4E-12		0.17324	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large LDL particle concentration	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	2E-12		0.175071	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very small VLDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762323441	2E-10		0.159866	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	1E-11		0.170148	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	3E-12		0.174707	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	1p13.3		rs1277930-A	0.763306132	9E-10		0.154278	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial esterified cholesterol	4,348 individuals	NA	1p13.3		rs1277930-A	0.7632695	2E-9		0.150528	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	3E-12		0.174003	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762438463	2E-12		0.175439	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large LDL	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	1E-12		0.177254	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	1p13.3		rs1277930-A	0.762263109	4E-12		0.17347	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting serum total cholesterol	4,734 individuals	NA	1p13.3		rs1277930-A	0.759367343	2E-10		0.151829	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol	4,734 individuals	NA	1p13.3		rs1277930-A	0.759120635	4E-11		0.156881	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p13.3		rs1277930-A	NR	3E-8		0.0136	[0.0087-0.0185] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1422	chr1	109822142	109822143	rs1277930	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1p13.3	CELSR2, PSRC1	rs1277930-A	0.77	3E-9		5.96	z-score increase	Affymetrix [4312306] (imputed)	N
1422	chr1	109822165	109822166	rs599839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	1p13.3		rs599839-G	0.22792	3E-16		0.0389976	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109822165	109822166	rs599839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	1p13.3		rs599839-G	0.22792	5E-14		0.0356592	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109822165	109822166	rs599839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1p13.3		rs599839-G	0.22792	1E-18		0.0390127	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
1422	chr1	109822165	109822166	rs599839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1p13.3		rs599839-G	0.22792	4E-30		0.0561712	[0.047-0.066] unit decrease	NR [11722792] (imputed)	N
1422	chr1	109822165	109822166	rs599839	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large LDL	4,348 individuals	NA	1p13.3		rs599839-A	0.762209062	1E-11		0.170068	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822165	109822166	rs599839	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	1p13.3		rs599839-A	0.76221468	3E-11		0.166254	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1422	chr1	109822165	109822166	rs599839	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		1p13.3	CELSR2, PSRC1	rs599839-G	NR	1E-25		0.01745	[0.013-0.022] nmol/l decrease	NR [19000000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	1p13.3	NR	rs599839-A	0.78	2E-7		1.1	[1.07-1.14]	Affymetrix, Illumina [at least 119674] (imputed)	N
1422	chr1	109822165	109822166	rs599839	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	1p13.3	PSRC1	rs599839-G	0.06456	2E-11	(LDL)	5.886	NR unit decrease	Affymetrix [305158]	N
1422	chr1	109822165	109822166	rs599839	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	1p13.3	PSRC1	rs599839-G	0.06456	1E-12	(total cholesterol)	6.822	NR unit decrease	Affymetrix [305158]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	7E-13	(M_LDL_PL)	0.07011895	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	3E-10	(S_LDL_CE)	0.07620991	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	1E-11	(S_LDL_C)	0.08125952	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	7E-9	(M_LDL_PL)	0.0870284	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	2E-8	(S_LDL_CE)	0.084586024	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1p13.3	PSRC1	rs599839-?	NR	1E-8	(S_LDL_C)	0.085326575	NR unit decrease	Illumina [609262]	N
1422	chr1	109822165	109822166	rs599839	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	1p13.3	NR	rs599839-A		4E-9				Illumina [458865]	N
1422	chr1	109822165	109822166	rs599839	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	1p13.3	NR	rs599839-?	NR	2E-27		4.373032	[3.58-5.16] unit increase	Illumina [32003504] (imputed)	N
1422	chr1	109822165	109822166	rs599839	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	1p13.3	NR	rs599839-?	NR	2E-35		4.463007	[3.76-5.17] unit increase	Illumina [31808917] (imputed)	N
1422	chr1	109822165	109822166	rs599839	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	1p13.3	CELSR2, PSRC1, SORT1	rs599839-?		7E-9				Affymetrix [at least 805769] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	NR	9E-154		0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.233	9E-17	(Hispanic)	0.147	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.228	7E-133	(EA)	0.136	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	NR	9E-228		0.168	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.233	9E-21	(Hispanic)	0.166	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.228	2E-200	(EA)	0.172	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.078	7E-6	(East Asian)	0.134	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	NR	5E-14		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs599839-G	0.228	1E-15	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1422	chr1	109822165	109822166	rs599839	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Ratio of apolipoprotein A1 to apolipoprotein B	8,372 Finnish ancestry males	NA	1p13.3	SORT1	rs599839-?	NR	7E-15		0.151	unit increase	Illumina [15144991] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p13.3	SORT1	rs599839-A	0.931	7E-26	(Asian initial, BMI unadjusted)	0.168	[0.14-0.2] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1p13.3	SORT1	rs599839-A	0.782	2E-204	(Trans-ethnic initial)	0.128	[0.12-0.14] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	1p13.3	SORT1	rs599839-A	0.93	2E-17	(BMI unadjusted)	0.162	[0.13-0.2] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p13.3	SORT1	rs599839-A	0.931	2E-31	(Asian initial, BMI unadjusted)	0.187	[0.16-0.22] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1p13.3	SORT1	rs599839-A	0.782	4E-289	(Trans-ethnic initial)	0.16	[0.15-0.17] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	1p13.3	SORT1	rs599839-A	0.93	2E-19	(BMI unadjusted)	0.173	[0.14-0.21] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	1p13.3	SORT1	rs599839-?		8E-17				Affymetrix, Illumina [up to 2500000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	1p13.3	SORT1	rs599839-?		1E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	1p13.3	CELSR2, PSRC1, SORT1	rs599839-G	0.06	2E-19	(LDL)	5.2254	[4.09-6.37] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1p13.3	SORT1	rs599839-A	0.78	3E-10		1.11	[1.08-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	20442857	Suchindran S	2010-04-29	PLoS Genet	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	1p13.3	PSRC1	rs599839-G	0.22	3E-15	(activity)	5.5	[NR] nmol/ml/min decrease	Affymetrix [360811]	N
1422	chr1	109822165	109822166	rs599839	18262040	Sandhu MS	2008-02-09	Lancet	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	1p13.3	CELSR2, PSRC1	rs599839-G	0.19	1E-33		0.16	[0.14-0.18] mmol/L decrease	Affymetrix, Illumina [up to 461986]	N
1422	chr1	109822165	109822166	rs599839	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	1p13.3	CELSR2, PSRC1, SORT1	rs599839-A	0.77	6E-33		5.48	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1422	chr1	109822165	109822166	rs599839	18179892	Wallace C	2008-01-10	Am J Hum Genet	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families, 1,461 European ancestry twins	1p13.3	PSRC1, CELSR2	rs599839-G	0.24	1E-7		0.95	[0.93-0.97] mMol/l increase	Affymetrix [400496]	N
1422	chr1	109822165	109822166	rs599839	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	1p13.3	PSRC1	rs599839-A	0.77	4E-9		1.29	[1.18-1.40]	Affymetrix [377857]	N
1422	chr1	109823961	109823962	rs72703210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs72703210-C	NR	3E-44		0.0818	[0.07-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109823961	109823962	rs72703210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs72703210-C	NR	5E-61		0.0967	[0.085-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109823961	109823962	rs72703210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs72703210-C	NR	2E-88		0.1171	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109823961	109823962	rs72703210	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs72703210-?	NR	1E-9		4.386	[3.01-5.76] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1422	chr1	109831267	109831268	rs6689611	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	MYBPHL	rs6689611-G	0.987626	7E-44		0.132132	[0.11-0.15] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109834038	109834039	rs17036085	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs17036085-G	NR	2E-9		0.0653	[0.044-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109834038	109834039	rs17036085	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs17036085-G	NR	3E-12		0.0758	[0.055-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1422	chr1	109834038	109834039	rs17036085	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	MYBPHL	rs17036085-A	0.987823	4E-13		0.0685676	[0.05-0.087] unit increase	Affymetrix [NR] (imputed)	N
1422	chr1	109838263	109838264	rs12127701	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	1p13.3	MYBPHL	rs12127701-G	0.06	2E-9		1.7	[1.15-2.25] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1423	chr1	109839399	109839400	rs55660224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs55660224-T	NR	6E-87		0.0851	[0.077-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109839399	109839400	rs55660224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs55660224-T	NR	3E-115		0.0982	[0.09-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109839399	109839400	rs55660224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs55660224-T	NR	1E-163		0.1176	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840168	109840169	rs76186504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs76186504-T	NR	2E-35		0.0958	[0.081-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840168	109840169	rs76186504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs76186504-T	NR	2E-52		0.1175	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840168	109840169	rs76186504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs76186504-T	NR	1E-79		0.1459	[0.13-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840168	109840169	rs76186504	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	MYBPHL	rs76186504-C	0.974978	4E-69		0.116409	[0.1-0.13] unit increase	Affymetrix [NR] (imputed)	N
1423	chr1	109840628	109840629	rs600806	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p13.3	MYBPHL	rs600806-A	NR	4E-11		0.021996794	[0.015-0.029] unit decrease	Affymetrix [NR]	N
1423	chr1	109840917	109840918	rs115030251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs115030251-T	NR	4E-13		0.0253	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840917	109840918	rs115030251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs115030251-T	NR	7E-15		0.0272	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840917	109840918	rs115030251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p13.3	NR	rs115030251-T	NR	1E-12		0.0248	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109840917	109840918	rs115030251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p13.3	NR	rs115030251-T	NR	4E-13		0.0253	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1423	chr1	109840917	109840918	rs115030251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs115030251-T	NR	3E-18		0.0305	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109842270	109842271	rs680434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p13.3	Intergenic	rs680434-C	0.2827	1E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1423	chr1	109845251	109845252	rs638542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p13.3	Intergenic	rs638542-A	0.7171	2E-15	(MTAG)	0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1423	chr1	109846277	109846278	rs407102	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p13.3	MYBPHL	rs407102-T	0.6996	9E-20		0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1423	chr1	109846277	109846278	rs407102	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p13.3	MYBPHL	rs407102-T	NR	2E-10		6.351	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1423	chr1	109886370	109886371	rs11102974	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p13.3	SORT1	rs11102974-?	NR	1E-9		6.065	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1423	chr1	109891132	109891133	rs10127790	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC1	5,360 Icelandic ancestry individuals	NA	1p13.3		rs10127790-C	0.2996	4E-19		0.174828	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
1423	chr1	109891132	109891133	rs10127790	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1p13.3	SYPL2	rs10127790-T	NR	8E-9		0.0061	[0.0041-0.0081] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1423	chr1	109894755	109894756	rs112987420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs112987420-C	NR	2E-10		0.0608	[0.042-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109894755	109894756	rs112987420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs112987420-C	NR	2E-14		0.0728	[0.054-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109897102	109897103	rs11142	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1p13.3	NR	rs11142-A	NR	7E-6				NR [NR] (imputed)	N
1423	chr1	109897102	109897103	rs11142	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	1p13.3	SORT1	rs11142-A	NR	7E-6			[NR]	NR [NR] (imputed)	N
1423	chr1	109901461	109901462	rs1963869	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p13.3	SYPL2	rs1963869-G	0.3422	4E-15		7.871	NR z score decrease	Illumina [26237160] (imputed)	N
1423	chr1	109914808	109914809	rs71655999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs71655999-T	NR	4E-15		0.0753	[0.056-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109914808	109914809	rs71655999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs71655999-T	NR	2E-20		0.0887	[0.07-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109914808	109914809	rs71655999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs71655999-T	NR	1E-30		0.1105	[0.092-0.129] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109933449	109933450	rs56072034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs56072034-A	NR	3E-11		0.0508	[0.036-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1423	chr1	109933449	109933450	rs56072034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs56072034-A	NR	7E-12		0.0525	[0.037-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1423	chr1	109933449	109933450	rs56072034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs56072034-A	NR	1E-13		0.0569	[0.042-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1423	chr1	109935324	109935325	rs3768495	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p13.3	SORT1	rs3768495-T	0.7173	1E-17		0.0178	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1423	chr1	109946094	109946095	rs4970846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs4970846-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1423	chr1	109948138	109948139	rs34573869	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p13.3	MYBPHL	rs34573869-D	0.0651	1E-10		0.9757	[0.68-1.27] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1423	chr1	109949755	109949756	rs10858093	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	PSMA5	rs10858093-C	0.966809	2E-10		0.0378458	[0.026-0.049] unit decrease	Affymetrix [NR] (imputed)	N
1423	chr1	109958696	109958697	rs115858205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs115858205-A	NR	4E-10		0.0661	[0.046-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109958696	109958697	rs115858205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs115858205-A	NR	1E-15		0.0845	[0.064-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1423	chr1	109967103	109967104	rs10858096	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p13.3	NR	rs10858096-A	NR	4E-9		5.869	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1423	chr1	109967103	109967104	rs10858096	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p13.3	PSMA5	rs10858096-A	NR	5E-8		5.453	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1423	chr1	109967103	109967104	rs10858096	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p13.3	PSMA5	rs10858096-A	NR	1E-12		0.02120386	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1424	chr1	109999837	109999838	rs1933182	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	1p13.3	AMIGO1, SORT1, ATXN7L2, SYPL2, CYB561D1, PSMA5	rs1933182-A	0.3	1E-7	(eGFRcrea)	0.01	[0.006-0.010] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1424	chr1	110006664	110006665	rs61797139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs61797139-T	NR	2E-10		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1424	chr1	110006664	110006665	rs61797139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs61797139-T	NR	9E-11		0.0289	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1424	chr1	110006664	110006665	rs61797139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs61797139-T	NR	5E-16		0.0363	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1424	chr1	110009105	110009106	rs4970764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs4970764-G	0.471473	5E-13				Affymetrix, Illumina [23114412] (imputed)	N
1424	chr1	110011700	110011701	rs2152924	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1p13.3	SYPL2	rs2152924-?	NR	2E-10		6.349	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1424	chr1	110011700	110011701	rs2152924	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	1p13.3	SYPL2	rs2152924-?	NR	2E-9		6.012	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1424	chr1	110012288	110012289	rs10857788	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p13.3	SYPL2	rs10857788-A	0.7001	2E-20		0.003	[0.0022-0.0038] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1424	chr1	110014169	110014170	rs12136063	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	1p13.3	SYPL2	rs12136063-A	0.7	5E-8	(EA)	0.0045	[0.0029-0.0061] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1424	chr1	110019438	110019439	rs62623713	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p13.3	SYPL2	rs62623713-G	0.06000000000000005	4E-14		0.0276	[0.021-0.035] unit increase	Illumina [246328]	N
1424	chr1	110023169	110023170	rs115049444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs115049444-C	NR	1E-20		0.0916	[0.072-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110023169	110023170	rs115049444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs115049444-C	NR	4E-30		0.1124	[0.093-0.132] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110023169	110023170	rs115049444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs115049444-C	NR	5E-44		0.1374	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110030944	110030945	rs1144593	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1p13.3	NR	rs1144593-A	0.312127	3E-13		0.049577463	[0.036-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1424	chr1	110030944	110030945	rs1144593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1p13.3	Intergenic	rs1144593-A	0.6944	2E-13		0.0228	[0.017-0.029] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1424	chr1	110030944	110030945	rs1144593	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1p13.3	NR	rs1144593-A	NR	2E-10		6.398	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1424	chr1	110030944	110030945	rs1144593	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p13.3	ATXN7L2	rs1144593-A	NR	3E-10		0.020071251	[0.014-0.026] unit decrease	Affymetrix [NR]	N
1424	chr1	110031187	110031188	rs12049330	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	1p13.3	ATXN7L2, SYPL2, CYB561D1	rs12049330-G	0.14	6E-6		1.44		Affymetrix [671424]	N
1424	chr1	110031989	110031990	rs10494041	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p13.3		rs10494041-C	0.8269	1E-12		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1424	chr1	110032430	110032431	rs41279732	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1p13.3	PSRC1	rs41279732-?	NR	5E-23		3.849	[3.04-4.65] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1424	chr1	110035158	110035159	rs11590351	33937362	Moller PL	2021-04-16	Front Cardiovasc Med	Sortilin as a Biomarker for Cardiovascular Disease Revisited.	Sortilin levels (OLINK)	1,173 European ancestry individuals	NA	1p13.3	NR	rs11590351-C	0.25	2E-11			NR	Illumina [4658994] (imputed)	N
1424	chr1	110040309	110040310	rs6666119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p13.3		rs6666119-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1424	chr1	110040309	110040310	rs6666119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p13.3	Intergenic	rs6666119-A	0.6928	3E-21	(MTAG)	0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1424	chr1	110040452	110040452	rs756655457	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1p13.3	NR	rs756655457-?		1E-11		0.0160987	[0.011-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1424	chr1	110040452	110040452	rs756655457	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	1p13.3	NR	rs756655457-?		2E-11		0.0162774	[0.012-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
1424	chr1	110040679	110040680	rs2297797	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p13.3	CYB561D1	rs2297797-?	NR	3E-8		0.011191746	[0.0072-0.0151] unit decrease	NR [7306098]	N
1424	chr1	110040679	110040680	rs2297797	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	1p13.3	CYB561D1	rs2297797-?	NR	8E-7		0.039	[0.023-0.055] unit decrease	Affymetrix, Illumina [8037763] (imputed)	N
1424	chr1	110042078	110042079	rs2091329	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1p13.3	CYB561D1	rs2091329-A	NR	2E-8		5.597	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1424	chr1	110042443	110042444	rs1043274	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	CYB561D1	rs1043274-A	0.026	9E-6	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1424	chr1	110045879	110045880	rs4370783	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	1p13.3	CYB561D1	rs4370783-C	0.115	3E-8		0.0321	[0.021-0.043] unit decrease	Illumina [~ 250000] (imputed)	N
1424	chr1	110046372	110046373	rs575113	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs575113-A	0.2941	8E-18		0.0133	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1424	chr1	110046372	110046373	rs575113	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.3	Intergenic	rs575113-A	0.2941	5E-22	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1424	chr1	110047109	110047110	rs14184	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.3	Intergenic	rs14184-C	0.6985	2E-19	(MTAG)	0.0162	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1424	chr1	110048435	110048436	rs3738772	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs3738772-A	0.2932	2E-18	(conditional-joint)	0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1424	chr1	110048435	110048436	rs3738772	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1p13.3	AMIGO1	rs3738772-A	NR	5E-9		0.018886873	[0.013-0.025] unit increase	Affymetrix [NR]	N
1424	chr1	110050179	110050180	rs150743133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs150743133-T	NR	1E-10		0.0937	[0.065-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110050179	110050180	rs150743133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs150743133-T	NR	4E-13		0.105	[0.077-0.133] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110050179	110050180	rs150743133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs150743133-T	NR	2E-18		0.1271	[0.099-0.156] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110053908	110053909	rs569438828	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		1p13.3	intergenic	rs569438828-A	0.295	3E-6		0.451	[0.26-0.64] unit increase	Illumina [640625] (imputed)	N
1424	chr1	110054117	110054118	rs79158426	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	1p13.3	GPR61	rs79158426-A	0.9552	4E-6	(Subset)	0.2811	[0.16-0.4] unit increase	Illumina [up to 38043574] (imputed)	N
1424	chr1	110061973	110061974	rs115458560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs115458560-C	NR	5E-12		0.0617	[0.044-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110061973	110061974	rs115458560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs115458560-C	NR	2E-14		0.0686	[0.051-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110061973	110061974	rs115458560	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p13.3	AMIGO1	rs115458560-T	0.981437	7E-11		0.0503283	[0.035-0.065] unit increase	Affymetrix [NR] (imputed)	N
1424	chr1	110068290	110068291	rs116276872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs116276872-T	NR	5E-9		0.0485	[0.032-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110068290	110068291	rs116276872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs116276872-T	NR	1E-12		0.0588	[0.043-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1424	chr1	110073939	110073940	rs79618722	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	1p13.3	GPR61	rs79618722-A	0.0448	3E-7		0.2852	[0.18-0.39] unit decrease	Illumina [up to 38043574] (imputed)	N
1424	chr1	110079142	110079143	rs12141273	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1p13.3	NR	rs12141273-A	NR	4E-7				NR [NR] (imputed)	N
1424	chr1	110079142	110079143	rs12141273	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	1p13.3	AMIGO1, GPR61	rs12141273-A	NR	4E-7			[NR]	NR [NR] (imputed)	N
1424	chr1	110082550	110082551	rs41279738	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p13.3	GPR61	rs41279738-T	0.974003	4E-23		0.0427759	[0.034-0.051] unit decrease	Affymetrix [12370749]	N
1424	chr1	110082550	110082551	rs41279738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs41279738-?	NR	2E-28				Affymetrix [~ 8270000] (imputed)	N
1424	chr1	110082550	110082551	rs41279738	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p13.3	GPR61	rs41279738-T	0.9731	1E-7		0.0275818	[0.017-0.038] unit increase	Affymetrix [11880941] (imputed)	N
1424	chr1	110082550	110082551	rs41279738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.3		rs41279738-?	NR	5E-29				NR [~ 8900000] (imputed)	N
1424	chr1	110082550	110082551	rs41279738	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p13.3	NR	rs41279738-?	NR	7E-10		0.40958	[0.28-0.54] unit increase	Affymetrix [7794483] (imputed)	N
1424	chr1	110082550	110082551	rs41279738	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p13.3	NR	rs41279738-?	NR	1E-6	(female)	0.52429	[0.31-0.73] unit increase	Affymetrix [7794483] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	1p13.3	NR	rs7550711-?	NR	4E-7		7.591	NR z score increase	Affymetrix, Illumina [10031233] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p13.3	GPR61	rs7550711-C	0.973981	5E-28		0.0484123	[0.04-0.057] unit decrease	Affymetrix [12370749]	N
1424	chr1	110082885	110082886	rs7550711	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1p13.3	NR	rs7550711-T	0.02553	5E-15		0.061532624	[0.046-0.077] unit increase	Affymetrix [10549349] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p13.3	NA	rs7550711-T	0.0279	9E-39		0.0657	[0.056-0.076] unit increase	NR [~ 27400000] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p13.3	GPR61	rs7550711-T	0.0351	3E-9	(women)	0.0884	[0.059-0.118] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GPR61	rs7550711-?	NR	6E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GPR61	rs7550711-T	0.0371	2E-10	(women)	0.0856	[0.059-0.112] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p13.3	GPR61	rs7550711-T	NR	5E-8		0.105	[0.068-0.142] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p13.3	GPR61	rs7550711-T	0.04	5E-8		0.105	[0.068-0.142] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1p13.3	NR	rs7550711-T	0.0382966646320195	8E-16		0.06373383	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.3	GPR61	rs7550711-T	0.0402	3E-9	(EA)	0.0577	[0.038-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.3	GPR61	rs7550711-T	0.0402	1E-9	(EA, women)	0.078	[0.053-0.103] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1424	chr1	110082885	110082886	rs7550711	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1p13.3	GPR61	rs7550711-T	NR	5E-6		0.2743	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1424	chr1	110086450	110086451	rs17575798	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1p13.3	GPR61	rs17575798-G	0.8082	4E-14		1.0379905		Affymetrix [11880941] (imputed)	N
1424	chr1	110086450	110086451	rs17575798	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p13.3	GPR61	rs17575798-G	0.8082	4E-14		1.0341709		Affymetrix [11880941] (imputed)	N
1424	chr1	110086450	110086451	rs17575798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p13.3		rs17575798-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1424	chr1	110089028	110089029	rs41301297	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1p13.3	NR	rs41301297-T	0.035531	1E-8		0.10442	[0.069-0.14] unit decrease	Affymetrix [17914406] (imputed)	N
1425	chr1	110109038	110109039	rs518076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs518076-G	NR	3E-21		0.0363	[0.029-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110109038	110109039	rs518076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs518076-G	NR	8E-30		0.0435	[0.036-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110109038	110109039	rs518076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs518076-G	NR	2E-42		0.0525	[0.045-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110114503	110114504	rs144376234	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1p13.3	GNAI3	rs144376234-T	0.04	1E-8		0.12	[0.079-0.161] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1425	chr1	110119731	110119732	rs6537837	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	1p13.3	GNAT2, GNAI3, AMPD2	rs6537837-T	0.17	1E-6		1.43		Affymetrix [671424]	N
1425	chr1	110122949	110122950	rs114003685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs114003685-T	NR	6E-23		0.0852	[0.068-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110122949	110122950	rs114003685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs114003685-T	NR	6E-35		0.1068	[0.09-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110122949	110122950	rs114003685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs114003685-T	NR	1E-51		0.1311	[0.11-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110147320	110147321	rs17024258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p13.3		rs17024258-T	NR	2E-8		0.036	[0.023-0.049] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1425	chr1	110147320	110147321	rs17024258	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p13.3	NR	rs17024258-T	0.03	5E-9		0.0331	[0.022-0.044] unit increase	NR [NR]	N
1425	chr1	110147320	110147321	rs17024258	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1p13.3	GNAT2	rs17024258-T	0.04	9E-12	(Obesity class I)	1.25	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p13.3		rs17024393-C	NR	4E-17		0.0549	[0.042-0.068] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p13.3		rs17024393-C	NR	7E-18		0.0635	[0.049-0.078] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p13.3	NA	rs17024393-T	0.9689	7E-39		0.0644	[0.055-0.074] unit decrease	NR [~ 27400000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p13.3	NA	rs17024393-T	0.9689	7E-39		0.0644	[0.055-0.074] unit decrease	NR [~ 27400000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p13.3	NR	rs17024393-T	NR	6E-13		0.053	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1p13.3	GNAT2	rs17024393-T	0.9742	2E-8		0.005	[0.0032-0.0068] unit increase	Affymetrix [15275733] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.044300000000000006	9E-13		0.0775	[0.056-0.099] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.039100000000000024	9E-13	(EA)	0.0831	[0.06-0.106] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.03739999999999999	2E-9	(EA,women)	0.0906	[0.061-0.12] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-?	NR	7E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-?	NR	3E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-?	NR	1E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-?	NR	1E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.044300000000000006	8E-7	(men)	0.0723	[0.044-0.101] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.044300000000000006	2E-15		0.0771	[0.058-0.096] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.039100000000000024	9E-11	(EA, women)	0.0881	[0.061-0.115] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.039100000000000024	4E-6	(EA, men)	0.0709	[0.041-0.101] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.3	GNAT2	rs17024393-C	0.039100000000000024	2E-15	(EA)	0.0835	[0.063-0.104] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	2E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	4E-6	(women)	0.06	[0.035-0.085] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	1E-9		0.0632	[0.043-0.084] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	8E-9	(women)	0.0661	[0.044-0.089] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	5E-13		0.0656	[0.048-0.083] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p13.3	GNAT2	rs17024393-T	0.9549	3E-6	(men)	0.0641	[0.037-0.091] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	1p13.3	GNAT2	rs17024393-C	NR	6E-8	(additive model)	0.07	[0.045-0.095] unit increase	NR [9288881] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1p13.3	NR	rs17024393-C	NR	3E-8				Affymetrix, Illumina [2499691] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p13.3	GNAT2	rs17024393-C	0.043	2E-13		0.061	[0.045-0.077] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1425	chr1	110154687	110154688	rs17024393	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p13.3	GNAT2	rs17024393-C	0.04	7E-14	(EA)	0.066	[0.049-0.083] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1425	chr1	110154687	110154688	rs17024393	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p13.3	GNAT2	rs17024393-C	0.04	2E-7	(EA, men)	0.061	[0.038-0.083] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1425	chr1	110154687	110154688	rs17024393	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p13.3	GNAT2	rs17024393-C	0.039	4E-10	(EA, women)	0.071	[0.049-0.094] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1425	chr1	110154687	110154688	rs17024393	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.3	GNAT2	rs17024393-T	0.9575	3E-10	(EA)	0.0632	[0.044-0.083] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1425	chr1	110154687	110154688	rs17024393	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.3	GNAT2	rs17024393-T	0.9575	2E-10	(EA,women)	0.0842	[0.058-0.11] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1425	chr1	110162994	110162995	rs114804066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs114804066-G	NR	3E-14		0.0904	[0.067-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110162994	110162995	rs114804066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs114804066-G	NR	3E-22		0.1158	[0.092-0.139] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110162994	110162995	rs114804066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs114804066-G	NR	3E-35		0.1478	[0.12-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
1425	chr1	110163878	110163879	rs28362581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs28362581-A	NR	2E-10		0.0318	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1425	chr1	110170639	110170640	rs55739424	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	AMPD2	rs55739424-G	0.970555	5E-8		0.033372	[0.021-0.045] unit decrease	Affymetrix [NR] (imputed)	N
1425	chr1	110179446	110179447	rs72705211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs72705211-A	NR	1E-10		0.0377	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1425	chr1	110179755	110179756	rs17024629	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor positive)	4,299 African ancestry cases, 10,193 African ancestry controls, 69,501 European ancestry cases, 105,974 European ancestry controls	NA	1p13.3		rs17024629-T	0.16	1E-6		0.95	[0.93-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1425	chr1	110179755	110179756	rs17024629	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	9,241 African ancestry cases, 10,193 African ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	NA	1p13.3		rs17024629-T	0.16	3E-8		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1425	chr1	110179755	110179756	rs17024629	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	122,977 European ancestry cases, 105,974 European ancestry controls	NA	1p13.3		rs17024629-T	0.16	1E-6		0.96	[0.94-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1425	chr1	110197131	110197132	rs3754450	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	1p13.3	AMPD2, GSTM4	rs3754450-T		3E-6		0.244	[0.14-0.35] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
1425	chr1	110218760	110218761	rs619686	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	1p13.3	intergenic	rs619686-G	0.05576	5E-8	(Intercanthal width)	0.7629	[0.44-1.08] unit decrease	Illumina [34985077] (imputed)	N
1425	chr1	110222901	110222902	rs5776993	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	1p13.3	NR	rs5776993-C	0.88	3E-8		1.0526316	[1.04-1.09]	Illumina [~ 10800000] (imputed)	N
1425	chr1	110222901	110222902	rs5776993	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p13.3	NR	rs5776993-C	0.8767	2E-7	(EA)	0.0563	[0.035-0.077] unit increase	Illumina [~ 11800000] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	5E-14		0.0342462	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	1E-14		0.0352346	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	2E-9		0.0266516	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	4E-8		0.0251223	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	2E-11		0.0321169	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	3E-14		0.0374109	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	3E-13		0.0330165	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	4E-9		0.0287903	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	2E-14		0.0375221	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	5E-12		0.0313595	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	2E-14		0.0375702	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs36209093-C	0.325978	7E-12		0.0309512	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p13.3	GSTM2	rs36209093-C	0.36	8E-16	(X - 21796)	0.103	[0.078-0.128] unit decrease	Illumina [7750367] (imputed)	N
1425	chr1	110229786	110229787	rs36209093	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1p13.3	GSTM2	rs36209093-C	0.36	7E-86	(X - 23438)	0.425	[0.38-0.47] unit increase	Illumina [7750367] (imputed)	N
1425	chr1	110230015	110230016	rs412302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1p13.3	NR	rs412302-G	0.742053	8E-14		0.042541	[0.031-0.054] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1425	chr1	110230072	110230073	rs3815026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	1p13.3		rs3815026-C	0.372753	3E-8		0.0266773	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1425	chr1	110230137	110230138	rs28549287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p13.3		rs28549287-A	NR	3E-24		0.0259	[0.021-0.031] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	1E-17		0.0394141	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	5E-13		0.029953	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	5E-13		0.0314566	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269925	2E-30		0.0523577	[0.043-0.061] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	5E-12		0.0311774	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	3E-14		0.034879	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	3E-20		0.0422544	[0.033-0.051] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	1E-9		0.0252058	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	2E-15		0.0334958	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	1E-16		0.0360405	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	3E-10		0.0261574	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1p13.3		rs140584594-A	0.269899	2E-16		0.0348214	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1p13.3		rs140584594-G	NR	1E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1p13.3		rs140584594-G	NR	1E-36		0.0322	[0.027-0.037] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1p13.3		rs140584594-G	NR	3E-17		0.0211	[0.016-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1p13.3	GSTM1	rs140584594-?	NR	3E-10		0.0014	[0.00081-0.00199] unit decrease	Affymetrix [21347608] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1p13.3	GSTM1	rs140584594-?	NR	7E-22		0.0041	[0.0031-0.0051] unit decrease	Affymetrix [21347608] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1p13.3	GSTM1	rs140584594-A	0.26984	4E-21		0.00411006	[0.0033-0.005] unit decrease	Affymetrix [13995440] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p13.3	GSTM1	rs140584594-G	0.730509	2E-14		0.01915239	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p13.3	GSTM1	rs140584594-A	0.269784	3E-16		0.020177886	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.3	GSTM1	rs140584594-G	0.730364	1E-9		0.0150252655	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.3	GSTM1	rs140584594-G	0.730536	3E-13		0.018165302	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs140584594-G	0.664232	2E-16				Affymetrix, Illumina [17210439] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p13.3	NR	rs140584594-G	0.676569	1E-18		0.019992	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1p13.3	GSTM2	rs140584594-A	0.269933	6E-10		0.0144404	[0.0099-0.019] unit increase	Affymetrix [NR] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p13.3	GSTM2	rs140584594-A	0.270241	6E-48		0.0309892	[0.027-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p13.3	GSTM2	rs140584594-A	0.270291	3E-59		0.0356006	[0.031-0.04] unit decrease	Affymetrix [NR] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1p13.3	NR	rs140584594-A	0.269644	4E-49		0.0134528	[0.012-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1p13.3	NR	rs140584594-A	0.269933	2E-30		0.0152045	[0.013-0.018] unit increase	Affymetrix [16585854] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p13.3	NR	rs140584594-A	0.269348	2E-21		0.0118261	[0.0093-0.0143] unit increase	Affymetrix [16582621] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1p13.3	NR	rs140584594-A	0.269644	7E-38		0.0132351	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1p13.3	NR	rs140584594-A	0.269933	9E-21		0.0145262	[0.011-0.018] unit increase	Affymetrix [16585866] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p13.3	NR	rs140584594-A	0.269348	9E-19		0.0119889	[0.0093-0.0147] unit increase	Affymetrix [16582614] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1p13.3	NR	rs140584594-G	0.7302580000000001	1E-13		0.0166098	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1426	chr1	110232982	110232983	rs140584594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p13.3	NR	rs140584594-G	0.7299089999999999	2E-13		0.0211557	[0.016-0.027] unit increase	Affymetrix [16585745] (imputed)	N
1426	chr1	110233146	110233147	rs1056806	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTM3	5,359 Icelandic ancestry individuals	NA	1p13.3		rs1056806-T	0.0617	1E-11		0.264675	[0.19-0.34] unit increase	Illumina [7506463] (imputed)	N
1426	chr1	110241315	110241316	rs57754494	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1p13.3	GSTM2	rs57754494-G	0.884444	4E-14		0.0266284	[0.02-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1426	chr1	110244992	110244993	rs398145	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs398145-A	0.3549	3E-10		0.1092	[0.075-0.143] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1426	chr1	110244992	110244993	rs398145	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs398145-A	0.3633	3E-21		0.1125	[0.089-0.136] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1426	chr1	110246052	110246053	rs115929572	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.3	GSTM3	rs115929572-G	0.93453125	3E-15	(GSTM3, 9748_31_3)	0.39814332	[0.3-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
1426	chr1	110246052	110246053	rs115929572	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.3	GSTM1	rs115929572-G	0.93453125	7E-7	(GSTM1, 7239_9_3)	0.248966	[0.15-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1426	chr1	110257946	110257947	rs7539980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs7539980-C	NR	6E-11		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1426	chr1	110260570	110260570	rs780766383	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.3	NR	rs780766383-GGT	0.06098	1E-8	(GSTM3)	0.06486	NR unit increase	Illumina [1671387] (imputed)	N
1426	chr1	110260741	110260742	rs11807	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTM3	5,359 Icelandic ancestry individuals	NA	1p13.3		rs11807-C	0.1886	1E-17		0.203836	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1426	chr1	110260741	110260742	rs11807	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.3	NR	rs11807-C	0.1777	2E-10	(GSTM3)	0.04511	NR unit increase	Illumina [1671387] (imputed)	N
1426	chr1	110266753	110266754	rs11101992	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.3	NR	rs11101992-C	0.3066	7E-12	(GSTM3)	0.04323	NR unit increase	Illumina [1671387] (imputed)	N
1426	chr1	110267650	110267651	rs12045101	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1p13.3	GSTM5	rs12045101-C	0.759138	7E-11		0.014553	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
1426	chr1	110267650	110267651	rs12045101	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1p13.3	GSTM5	rs12045101-C	0.759079	9E-11		0.0148742	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
1426	chr1	110271429	110271429	rs111501153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.3	NR	rs111501153-T	0.4007	3E-10	(GSTM3)	0.0335	NR unit decrease	Illumina [1671387] (imputed)	N
1426	chr1	110299690	110299691	rs11102001	25551457	Baumert J	2014-12-31	PLoS One	No evidence for genome-wide interactions on plasma fibrinogen by smoking, alcohol consumption and body mass index: results from meta-analyses of 80,607 subjects.	Fibrinogen levels (smoking status, alcohol consumption or body mass index interaction)	up to 80,607 European ancestry individuals	NA	1p13.3	EPS8L3	rs11102001-A	0.59	7E-7	(Alcohol consumption)	0.057	[0.033-0.081] g/L increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1426	chr1	110300276	110300277	rs11102002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1p13.3	NR	rs11102002-T	NR	2E-14		0.0393	[0.029-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1426	chr1	110300276	110300277	rs11102002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1p13.3	NR	rs11102002-T	NR	5E-23		0.0507	[0.041-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1426	chr1	110301259	110301260	rs6693815	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	1p13.3	GSTM3, GSTM4, EPS8L3	rs6693815-T	0.24	9E-6	(model 2)	0.53	[0.43-0.63] unit increase	Illumina [2100000] (imputed)	N
1426	chr1	110352476	110352477	rs10494112	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	1p13.3	CSF1, EPS8LS	rs10494112-G	0.20	7E-35		1.72	[1.57-1.87]	Illumina [2487078] (imputed)	N
1426	chr1	110362470	110362471	rs11102009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p13.3		rs11102009-T	NR	1E-8		0.0512	[0.034-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1427	chr1	110365460	110365478	rs67052019	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	1p13.3	EPS8L3	rs67052019-?	0.18	4E-8	(East Asian)	1.13	[1.08-1.18]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1427	chr1	110366043	110366044	rs485742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p13.3		rs485742-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1427	chr1	110366082	110366083	rs484959	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p13.3	RP4-735C1.6	rs484959-T	0.463768	1E-8		0.052000817	[0.034-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1427	chr1	110366082	110366083	rs484959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.3		rs484959-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1427	chr1	110366082	110366083	rs484959	20436471	Albagha OM	2010-05-02	Nat Genet	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	1p13.3	CSF1	rs484959-?	0.51	5E-24		1.82	[1.61-2.04]	Illumina [294663]	N
1427	chr1	110366264	110366265	rs488028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p13.3	NR	rs488028-C	NR	1E-10		0.027	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110370455	110370456	rs4970784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p13.3	RP4-735C1.6	rs4970784-A	0.463773	5E-10		0.014516344	[0.0099-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr1	110374733	110374734	rs547251	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p13.3	EPS8L3	rs547251-C	0.339119	2E-9		0.0116761	[0.0079-0.0155] unit decrease	NR [13737936] (imputed)	N
1427	chr1	110405270	110405271	rs6537883	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	1p13.3	CSF1	rs6537883-?	NR	3E-6	(Hypoesthesia, Dominant)			Illumina [243229]	N
1427	chr1	110408240	110408241	rs10857800	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	1p13.3	intergenic	rs10857800-?	NR	3E-6				Illumina [659222]	N
1427	chr1	110431513	110431514	rs11102024	32149159	Chen YM	2020-02-14	J Immunol Res	Genetic Association and Expression Correlation between Colony-Stimulating Factor 1 Gene Encoding M-CSF and Adult-Onset Still's Disease.	Adult onset Still's disease	70 Han Chinese ancestry cases, 688 Han Chinese ancestry controls	36 Han Chinese ancestry cases, 200 Han Chinese ancestry controls	1p13.3	CSF1	rs11102024-T	0.075	1E-8		3.28	[2.25-4.79]	Affymetrix [645983]	N
1427	chr1	110435327	110435328	rs17608459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p13.3	RP11-195M16.3	rs17608459-A	0.113377	8E-9		0.022032853	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110435327	110435328	rs17608459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p13.3	RP11-195M16.3	rs17608459-A	0.1198	7E-10		0.03594793	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr1	110439479	110439480	rs333960	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	CSF1	rs333960-G	0.144	2E-7	(QUICKl)	0.04	[NR] unit increase	Illumina [899892]	N
1427	chr1	110450032	110450033	rs1999714	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	1p13.3	CSF1	rs1999714-?	NR	3E-7		0.6656	[NR]	Illumina [2686126] (imputed)	N
1427	chr1	110469056	110469057	rs79372732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p13.3	NR	rs79372732-T	NR	1E-9		0.0423	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110469056	110469057	rs79372732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p13.3	NR	rs79372732-T	NR	9E-14		0.0519	[0.038-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	8E-9		0.0291523	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	3E-8		0.0282006	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	1E-9		0.031127	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	1E-8		0.0288007	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	9E-9		0.0293502	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	3E-9		0.0298583	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	6E-9		0.0296699	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs333947-G	0.849872	6E-9		0.0295414	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	1E-16		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	6E-18		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	1p13.3		rs333947-A	0.287291	3E-11		0.0291049	[0.021-0.038] unit decrease	Illumina [13477433] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	9E-16		0.0218	[0.017-0.027] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	1E-25		0.0287	[0.023-0.034] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	4E-15		0.0219	[0.016-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p13.3		rs333947-A	NR	2E-78		0.0471	[0.042-0.052] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	1p13.3		rs333947-A	0.287069	1E-31		0.0473746	[0.039-0.055] unit decrease	Illumina [13478956] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p13.3		rs333947-G	0.85	8E-9				Affymetrix [10369434] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p13.3		rs333947-G	0.85	3E-15				Affymetrix [10369434] (imputed)	N
1427	chr1	110470763	110470764	rs333947	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p13.3		rs333947-G	0.85	1E-8				Affymetrix [10369434] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p13.3	CSF1	rs333947-G	0.85	2E-64		16.9	z-score increase	Affymetrix [4314223] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	3E-10		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	1E-12		0.0249	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	4E-22		0.0338	[0.027-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	2E-25		0.0347	[0.028-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	2E-22		0.0325	[0.026-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	6E-51		0.0502	[0.044-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	NR	2E-11		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?		6E-9		0.032	[0.021-0.043] unit increase	Illumina [31500000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?		3E-26		0.0485	[0.039-0.058] unit increase	Illumina [31500000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	1p13.3		rs333947-A	0.16	2E-10		0.0755	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150123	1E-13		0.022783883	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150292	1E-15		0.02516333	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150271	5E-16		0.02544341	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150068	6E-14		0.02315784	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150095	1E-33		0.037386857	[0.031-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p13.3	CSF1	rs333947-A	0.150152	3E-14		0.02340775	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	0.178853	5E-22				Affymetrix, Illumina [24649327] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p13.3	NR	rs333947-A	0.15039	3E-20		0.024008	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	0.178724	1E-29				Affymetrix, Illumina [24588908] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p13.3	NR	rs333947-A	0.15051	1E-27		0.028144	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	0.169643	1E-45				Affymetrix, Illumina [23467995] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p13.3	NR	rs333947-A	0.150214	2E-44		0.036848	[0.032-0.042] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs333947-A	0.169649	4E-21				Affymetrix, Illumina [23472807] (imputed)	N
1427	chr1	110470763	110470764	rs333947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p13.3	NR	rs333947-A	0.150265	4E-23		0.026422	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1427	chr1	110470763	110470764	rs333947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.3		rs333947-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3		rs333947-G	NR	1E-6		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1p13.3	NR	rs333947-G	NR	2E-12		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?	NR	5E-13		0.03718	[0.027-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?	NR	3E-23		0.04838	[0.039-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?	NR	1E-40		0.0668	[0.057-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr1	110470763	110470764	rs333947	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	1p13.3	CSF1	rs333947-?	NR	1E-25		0.04797	[0.039-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr1	110470763	110470764	rs333947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p13.3	CSF1	rs333947-A	0.1505	3E-9		0.02965985	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p13.3	CSF1	rs333947-A	0.1505	9E-17		0.04142846	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr1	110470763	110470764	rs333947	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	1p13.3		rs333947-A	0.1492	3E-10		0.042	unit decrease	Illumina [28300000] (imputed)	N
1427	chr1	110472955	110472956	rs2050462	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Macrophage colony-stimulating factor 1 levels	21,758 European ancestry individuals	9,173 individuals	1p13.3		rs2050462-T	0.63	1E-19		0.0953	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1427	chr1	110475970	110475971	rs7548588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p13.3		rs7548588-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1427	chr1	110475970	110475971	rs7548588	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	1p13.3	NR	rs7548588-T	0.6075	4E-10		0.0617	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1427	chr1	110475970	110475971	rs7548588	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p13.3	CSF1	rs7548588-T	0.609	2E-10		0.0367	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1427	chr1	110480219	110480220	rs7364724	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1p13.3	NR	rs7364724-A	0.4032	2E-9	(European)	0.0377	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1427	chr1	110484265	110484266	rs56271026	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1p13.3	CSF1	rs56271026-T	0.5998	1E-7		0.0307	[0.019-0.042] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1427	chr1	110490340	110490341	rs17025223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p13.3		rs17025223-T	NR	2E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1427	chr1	110491211	110491212	rs6675402	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p13.3	NR	rs6675402-T	0.506	6E-9		0.00628051	[0.0042-0.0084] unit decrease	NR [9732723] (imputed)	N
1427	chr1	110491594	110491595	rs11102038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1p13.3		rs11102038-G	0.766735	1E-9		0.0286661	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1428	chr1	110493728	110493729	rs12217006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p13.3		rs12217006-A	0.153855	7E-10		0.0186879	[0.013-0.025] unit increase	Illumina [13479295] (imputed)	N
1428	chr1	110493728	110493729	rs12217006	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p13.3	CSF1, AHCYL1	rs12217006-?	NR	1E-10		0.027506597	[0.019-0.036] unit increase	Illumina [27896057] (imputed)	N
1428	chr1	110496086	110496087	rs9429767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs9429767-G	0.802522	2E-8		0.0267179	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1428	chr1	110496086	110496087	rs9429767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs9429767-G	0.802522	1E-8		0.0267728	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1428	chr1	110496086	110496087	rs9429767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1p13.3		rs9429767-G	0.802522	3E-8		0.0261396	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1428	chr1	110496086	110496087	rs9429767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1p13.3		rs9429767-G	0.802522	4E-8		0.0255853	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1428	chr1	110501596	110501597	rs11579145	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Macrophage colony-stimulating factor 1 levels	21,758 European ancestry individuals	9,173 individuals	1p13.3		rs11579145-A	0.52	2E-61		0.1615	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1428	chr1	110503295	110503296	rs17610659	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1p13.3	CSF1	rs17610659-T	0.48	1E-12		0.15	unit increase	Illumina [5270624] (imputed)	N
1428	chr1	110503962	110503963	rs12036565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p13.3		rs12036565-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1428	chr1	110530994	110530995	rs3768480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p13.3	Intergenic	rs3768480-C	0.457	6E-13	(MTAG)	0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr1	110530994	110530995	rs3768480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p13.3	Intergenic	rs3768480-G	0.543	3E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1428	chr1	110530994	110530995	rs3768480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.3	Intergenic	rs3768480-C	0.4569	1E-15	(MTAG)	0.0133	[0.01-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr1	110530994	110530995	rs3768480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs3768480-C	0.4523	8E-13		0.0101	[0.0074-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1428	chr1	110530994	110530995	rs3768480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.3	Intergenic	rs3768480-C	0.4523	1E-14	(MTAG)	0.0102	[0.0077-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr1	110534913	110534914	rs333078	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p13.3		rs333078-C	0.644	4E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1428	chr1	110534913	110534914	rs333078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p13.3		rs333078-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1428	chr1	110537863	110537864	rs11588387	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1p13.3	Intergenic	rs11588387-T	NR	1E-6	(between families)	4.893	unit increase	Affymetrix [up to 15107142] (imputed)	N
1428	chr1	110587955	110587956	rs7545139	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs7545139-A	0.5789	9E-12	(conditional-joint)	0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1428	chr1	110604746	110604747	rs2360635	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p13.3		rs2360635-A	0.32	6E-18		8.63	z score increase	Affymetrix [9061022] (imputed)	N
1428	chr1	110604746	110604747	rs2360635	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p13.3		rs2360635-A	0.32	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1428	chr1	110604746	110604747	rs2360635	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p13.3	NR	rs2360635-A	0.3333	4E-13				NR [9056863] (imputed)	N
1428	chr1	110611885	110611886	rs3754442	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p13.3	ALX3	rs3754442-T	0.59	1E-9		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1428	chr1	110612924	110612925	rs2274568	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p13.3	ALX3	rs2274568-G	0.419751	5E-10		0.0129372	[0.0088-0.017] unit increase	NR [16516521] (imputed)	N
1428	chr1	110614399	110614400	rs3768469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p13.3	Intergenic	rs3768469-A	0.5831	5E-11	(MTAG)	0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr1	110618729	110618730	rs1466788	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p13.3	ALX3	rs1466788-A	0.41	3E-16	(carnitine)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1429	chr1	110627922	110627923	rs10857812	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1p13.3		rs10857812-?	NR	2E-10				NR [9705931] (imputed)	N
1429	chr1	110645326	110645327	rs17025426	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p13.3	UBL4B, FAM40A, SLC6A17, ALX3	rs17025426-C	0.94	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1429	chr1	110652879	110652880	rs514341	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	1p13.3	NR	rs514341-T	0.08	6E-6		1.5	[1.32-1.68]	Illumina [4058415] (imputed)	N
1429	chr1	110661386	110661387	rs72690612	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p13.3	UBL4B	rs72690612-C	0.0244612139230286	5E-6	(P_Firmicutes_RNT)	0.330458	[0.19-0.47] unit increase	Illumina [7711310] (imputed)	N
1429	chr1	110661386	110661387	rs72690612	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p13.3	UBL4B	rs72690612-C	0.0244612139230286	1E-7	(O_Clostridiales_RNT)	0.382679	[0.24-0.53] unit increase	Illumina [7711310] (imputed)	N
1429	chr1	110663018	110663019	rs115490395	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1p13.3	UBL4B	rs115490395-A	0.00836560167579265	4E-8		0.01638	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1429	chr1	110674456	110674457	rs638372	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs638372-A	0.7629	1E-27		0.1538	[0.13-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1429	chr1	110674456	110674457	rs638372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.3	NR	rs638372-A	0.295784	9E-13		0.116246	[0.084-0.148] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1429	chr1	110720399	110720400	rs6689641	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs6689641-A	0.4556	3E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1429	chr1	110724487	110724488	rs535930	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1p13.3	RP5-1028L10.2	rs535930-A	0.541815	2E-8		1.0526316	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
1429	chr1	110724487	110724488	rs535930	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1p13.3	RP5-1028L10.2	rs535930-A	NR	7E-7		1.0416667	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1429	chr1	110724487	110724488	rs535930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1p13.3		rs535930-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1429	chr1	110730161	110730162	rs655296	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.3		rs655296-C	0.832	3E-10		0.1481	[0.1-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1429	chr1	110752138	110752139	rs2761438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs2761438-A	0.3807	2E-11		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1430	chr1	110761098	110761099	rs76577427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1p13.3	Intergenic	rs76577427-C	0.9088	2E-12	(MTAG)	0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1430	chr1	110761098	110761099	rs76577427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1p13.3	Intergenic	rs76577427-C	0.9088	2E-9		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1430	chr1	110761098	110761099	rs76577427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.3	Intergenic	rs76577427-C	0.909	3E-18	(MTAG)	0.0251	[0.019-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1430	chr1	110761098	110761099	rs76577427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.3		rs76577427-C	0.9006	8E-18		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1430	chr1	110761098	110761099	rs76577427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.3	Intergenic	rs76577427-C	0.9006	1E-19	(MTAG)	0.0199	[0.016-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1430	chr1	110765397	110765398	rs77052120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1p13.3	Intergenic	rs77052120-T	0.1034	7E-10	(MTAG)	0.0233	[0.016-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1430	chr1	110766453	110766454	rs59123361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1p13.3		rs59123361-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1430	chr1	110770222	110770223	rs958798	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1p13.3	KCNC4	rs958798-T	NR	2E-8	(GO:0045944|BP|08|positive regulation of transcription from RNA polymerase II promoter)	5.618814	NR Z-score increase	Illumina [8100000] (imputed)	N
1430	chr1	110770222	110770223	rs958798	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	1p13.3	KCNC4	rs958798-T	0.17	4E-7		0.03	[NR] unit increase	Illumina [2380486] (imputed)	N
1430	chr1	110778058	110778059	rs17358800	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	1p13.3	KCNC4	rs17358800-A	0.762545890181155	1E-6		1.2551776		Illumina [7574753] (imputed)	N
1430	chr1	110791821	110791822	rs12138917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p13.3	KCNC4	rs12138917-T	0.367455	6E-10		0.0141758025	[0.0097-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr1	110791821	110791822	rs12138917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p13.3	NR	rs12138917-T	0.36478	1E-11		0.013232	[0.0094-0.0171] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1430	chr1	110791821	110791822	rs12138917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p13.3		rs12138917-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1430	chr1	110799234	110799235	rs12038207	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1p13.3	NR	rs12038207-C	0.04	3E-6		1.2	[1.12-1.28]	Illumina [8468885] (imputed)	N
1430	chr1	110857663	110857664	rs547370	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	1p13.3	NR	rs547370-?		1E-5		0.71	[0.61-0.82]	Illumina [539473] (imputed)	N
1430	chr1	110867817	110867817	rs35058689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.3	RP5-1074L1.1	rs35058689-CTG	0.475365	3E-10		0.013865347	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr1	110872336	110872337	rs12144506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p13.3	RP5-1074L1.1	rs12144506-T	0.476652	7E-10		0.0125508	[0.0085-0.0166] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr1	110873814	110873815	rs11102089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p13.3	NR	rs11102089-T	0.473607	2E-10		0.011617	[0.0081-0.0152] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1430	chr1	110879633	110879634	rs4838999	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs4838999-G	0.437572	6E-10				Affymetrix, Illumina [24246363] (imputed)	N
1431	chr1	110911466	110911467	rs11323780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p13.3	SLC16A4	rs11323780-A	0.468568	1E-10		0.014252498	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr1	110931018	110931019	rs17025736	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p13.3	NR	rs17025736-?	NR	5E-11				Affymetrix [NR]	N
1431	chr1	110956778	110956778	rs199656906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	1p13.3	NR	rs199656906-?	NR	9E-6		0.1907	[0.11-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
1432	chr1	111020547	111020548	rs115473055	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1p13.3		rs115473055-C	0.913765	1E-8		0.0260657	[0.017-0.035] unit decrease	Illumina [13900000] (imputed)	N
1432	chr1	111021959	111021960	rs4839421	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion in depression	2,675 European ancestry responder cases, 1,861 European ancestry non-responder cases	NA	1p13.3	PROK1, KCNA10	rs4839421-?		5E-7		1.249	[1.146-1.362]	Illumina [~ 12000000] (imputed)	N
1432	chr1	111033808	111033809	rs4839431	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	1p13.3	CYMP	rs4839431-A		2E-7	(AA)			Illumina [NR]	N
1432	chr1	111061010	111061011	rs3748731	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	1p13.3	KCNA10	rs3748731-A	0.182	5E-7		0.648	[0.4-0.9] unit increase	Illumina [622468]	N
1433	chr1	111151527	111151528	rs74117900	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1p13.3	NR	rs74117900-C	0.7767	4E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1433	chr1	111155594	111155595	rs4839542	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1p13.3	NR	rs4839542-A	0.14	7E-6		1.2		Illumina [803202]	N
1433	chr1	111183164	111183165	rs114086506	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	1p13.3	intergenic	rs114086506-A	0.0287	1E-6		7.189073	[6.39-7.99]	Illumina [at least 656747] (imputed)	N
1433	chr1	111189631	111189632	rs72681760	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.3	KCNA2	rs72681760-T	0.986519	4E-8	(194 ms)	0.133425	[0.086-0.181] unit increase	Affymetrix [10000000] (imputed)	N
1433	chr1	111195301	111195302	rs11102143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p13.3	NR	rs11102143-C	0.167881	9E-11		0.016204	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1433	chr1	111200047	111200048	rs12750430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p13.3	RP11-284N8.3, AL365361.1	rs12750430-G	0.168993	5E-13		0.021373631	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1433	chr1	111237684	111237685	rs12061304	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	1p13.3	intergenic	rs12061304-?	0.10	1E-6				Affymetrix [253903]	N
1433	chr1	111258769	111258770	rs343604	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	1p13.3	KCNA3	rs343604-T	0.08	1E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1434	chr1	111313971	111313972	rs417743	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p13.3	Y_RNA	rs417743-T	0.331842	8E-9		0.05060281	[0.033-0.068] unit increase	Affymetrix [7288503] (imputed)	N
1434	chr1	111319348	111319348	rs113358329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p13.3		rs113358329-AAAAGG	0.241224	7E-11		0.016873028	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1434	chr1	111322018	111322019	rs1999512	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1p13.3	NR	rs1999512-?	NR	4E-8		1.0526427	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1434	chr1	111324726	111324727	rs11102159	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p13.3	LOC643232	rs11102159-T	NR	8E-6	(EA)	1.0573	[1.03-1.08]	Illumina [6627481] (imputed)	N
1434	chr1	111324726	111324727	rs11102159	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p13.3	LOC643232	rs11102159-T	NR	1E-6		1.05	[1.03-1.07]	Illumina [6627481] (imputed)	N
1434	chr1	111324726	111324727	rs11102159	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p13.3	intergenic	rs11102159-T	NR	3E-6		1.048	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1434	chr1	111327240	111327241	rs74567324	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p13.3	NR	rs74567324-T	NR	5E-7	(GEE model)	1.3319	[0.81-1.85] unit decrease	NR [NR] (imputed)	N
1434	chr1	111332344	111332345	rs343812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p13.3		rs343812-A	0.296296	7E-13		0.017376212	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1434	chr1	111332344	111332345	rs343812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs343812-A	0.306724	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
1434	chr1	111338671	111338672	rs115056380	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs115056380-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1434	chr1	111339450	111339451	rs200014787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p13.3	NR	rs200014787-D	0.265748	4E-11		0.015271	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1434	chr1	111348028	111348029	rs523066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p13.3		rs523066-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1434	chr1	111356840	111356841	rs1389724	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p13.3	NR	rs1389724-T	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1434	chr1	111359801	111359802	rs518785	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.3	NR	rs518785-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1434	chr1	111359801	111359802	rs518785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.3		rs518785-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1435	chr1	111417914	111417915	rs2885805	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	1p13.3	CD53	rs2885805-A	0.28	5E-6		0.207	[0.12-0.30] unit decrease	Illumina [546677]	N
1435	chr1	111463623	111463624	rs12567355	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	1p13.3	LRIF1	rs12567355-A	0.03	2E-7	(lumbar spine)	0.87	[0.54-1.2] g decrease	Illumina [> 1100000]	N
1435	chr1	111463623	111463624	rs12567355	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.3	CD53	rs12567355-A	0.026	9E-6	(BMD )	0.04	[NR] g/cm2 increase	Illumina [899892]	N
1436	chr1	111603481	111603482	rs1282146	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	1p13.3	LRIF1, DRAM2	rs1282146-G	0.07	1E-8		5.71	NR z score increase	Illumina [at least 900015] (imputed)	N
1436	chr1	111629154	111629156	rs369544589	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	1p13.3	NR	rs369544589-ATA	0.06401	2E-6		0.9994	NR unit increase	Affymetrix [3101376] (imputed)	N
1437	chr1	111679735	111679736	rs61804635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.3	DRAM2	rs61804635-A	0.108106	1E-14		0.02733007	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111681410	111681411	rs817579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p13.3	DRAM2	rs817579-G	0.143434	4E-14		0.023905354	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111684275	111684276	rs1335645	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p13.3	NR	rs1335645-G	NR	4E-18		0.0326	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr1	111684275	111684276	rs1335645	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	1p13.3	CEPT1, DENND2D	rs1335645-A	0.88	7E-9		4.3	[3.50-5.20] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1437	chr1	111686496	111686497	rs325925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p13.3		rs325925-C	NR	7E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1437	chr1	111686496	111686497	rs325925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs325925-C	0.653842	7E-20				Affymetrix, Illumina [23114412] (imputed)	N
1437	chr1	111692439	111692440	rs586995	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p13.3	CEPT1	rs586995-?	NR	8E-7		1.41	[1.23-1.63]	Illumina [at least 5000000] (imputed)	N
1437	chr1	111708626	111708627	rs4839104	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1p13.3	CEPT1	rs4839104-G	0.892089	2E-20		0.00742875	[0.0058-0.009] unit increase	Affymetrix [13995440] (imputed)	N
1437	chr1	111720462	111720467	rs77355087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p13.3		rs77355087-C	NR	3E-21		0.0259	[0.021-0.031] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1437	chr1	111726212	111726213	rs694180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p13.3	CEPT1	rs694180-G	0.658137	1E-14		0.017918183	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr1	111726212	111726213	rs694180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p13.3	NR	rs694180-G	0.656276	1E-20		0.018797	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1437	chr1	111732302	111732303	rs2764553	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1p13.3	DENND2D	rs2764553-C	NR	6E-7	(adults)	0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1437	chr1	111732710	111732711	rs2209457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.3	DENND2D	rs2209457-A	0.33185	2E-21		0.024135478	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr1	111732710	111732711	rs2209457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p13.3	DENND2D	rs2209457-A	0.3322	5E-17		0.03234826	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr1	111733723	111733724	rs10857859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs10857859-G	0.669965	7E-49				Affymetrix, Illumina [17210439] (imputed)	N
1437	chr1	111733723	111733724	rs10857859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p13.3	NR	rs10857859-G	0.666889	4E-52		0.030785	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1437	chr1	111733723	111733724	rs10857859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p13.3		rs10857859-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1437	chr1	111733883	111733884	rs72691294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.3	DENND2D	rs72691294-A	0.061999	2E-13		0.036732394	[0.027-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr1	111734121	111734122	rs2494015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1p13.3	DENND2D	rs2494015-T	0.684075	2E-18		0.020751713	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr1	111734121	111734122	rs2494015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1p13.3	DENND2D	rs2494015-T	0.684116	1E-16		0.019690953	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111736388	111736389	rs657801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p13.3		rs657801-T	NR	2E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1437	chr1	111736593	111736594	rs2282248	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p13.3	NR	rs2282248-T	0.328468	1E-8		0.0150665	[0.0098-0.0203] unit increase	Affymetrix [16585745] (imputed)	N
1437	chr1	111736636	111736637	rs657605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p13.3	DENND2D	rs657605-C	0.234155	7E-12		0.018140027	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr1	111737182	111737183	rs660173	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p13.3	DENND2D	rs660173-C	0.31	2E-8		5.64	z-score increase	Affymetrix [4314223] (imputed)	N
1437	chr1	111737397	111737398	rs9970286	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p13.3	DENND2D	rs9970286-A	0.3291	3E-7		0.0137	[0.0084-0.019] unit increase	Affymetrix [19819130] (imputed)	N
1437	chr1	111737397	111737398	rs9970286	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p13.3	DENND2D	rs9970286-A	0.3291	2E-20		0.0236	[0.019-0.029] unit increase	Affymetrix [19819130] (imputed)	N
1437	chr1	111737397	111737398	rs9970286	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p13.3	DENND2D	rs9970286-A	0.3291	6E-12		0.0172	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1437	chr1	111737915	111737916	rs630505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.3	NR	rs630505-C	0.235827	2E-19				Affymetrix, Illumina [24588908] (imputed)	N
1437	chr1	111737915	111737916	rs630505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p13.3	NR	rs630505-C	0.265731	9E-20		0.019017	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1437	chr1	111738107	111738108	rs629619	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1p13.3	DENND2D	rs629619-T	0.2	3E-10		1.08	[1.06-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
1437	chr1	111740344	111740345	rs599134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p13.3		rs599134-G	NR	9E-12		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1437	chr1	111740344	111740345	rs599134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p13.3	NR	rs599134-G	NR	5E-11		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr1	111740344	111740345	rs599134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p13.3	DENND2D	rs599134-G	0.775751	1E-11		0.018052908	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111740344	111740345	rs599134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p13.3	DENND2D	rs599134-G	0.775753	2E-12		0.018668108	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111740344	111740345	rs599134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p13.3	DENND2D	rs599134-G	0.775735	3E-10		0.01664716	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111740344	111740345	rs599134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p13.3	DENND2D	rs599134-G	0.775744	1E-10		0.01704751	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr1	111751533	111751534	rs2783441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.2	NR	rs2783441-T	0.155119	5E-12		0.149065	[0.11-0.19] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1437	chr1	111753192	111753193	rs2820064	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs2820064-A	0.9273	3E-21		0.2107	[0.17-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1437	chr1	111778324	111778325	rs11556868	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHI3L2	5,335 Icelandic ancestry individuals	NA	1p13.2		rs11556868-T	0.1331	2E-35		0.298511	[0.25-0.35] unit increase	Illumina [7506463] (imputed)	N
1437	chr1	111778324	111778325	rs11556868	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.2	CHI3L2	rs11556868-C	0.87140625	5E-18	(CHI3L2, 9383_24_3)	0.3215425	[0.25-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1438	chr1	111829219	111829220	rs10857870	30610941	Wang AW	2019-01-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk.	Anti-Toxoplasma gondii IgG seropositivity	256 Ashkenazi Jewish cases, 68 African American cases, 534 Ashkenazi Jewish controls, 217 African American controls	NA	1p13.2	CHIA	rs10857870-T		5E-6	(Ashkenazi Jewish)			Affymetrix, Illumina [up to 1101633] (imputed)	N
1438	chr1	111837134	111837135	rs7411387	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	1p13.2	CHIA, RP11-165H20.1, C1orf88	rs7411387-C	NR	3E-6	(EA)	1.61	[1.24-2.10]	Illumina [291943]	N
1438	chr1	111892904	111892905	rs3820443	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1p13.2	C1orf88	rs3820443-T	0.611	1E-6	(liability model)	0.07	[0.031-0.109] unit increase	NR [19725427] (imputed)	N
1438	chr1	111892904	111892905	rs3820443	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.2	CHIA	rs3820443-?	NR	6E-6	(TAG 52:4)	0.16618201	[0.094-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1438	chr1	111903303	111903304	rs2050605	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		CHIA	rs2050605-?	NR	9E-6	(creatinine)	0.1742692	[0.097-0.251] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1438	chr1	111912773	111912773	rs10644052	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs10644052-T	0.7496	9E-18		0.1652	[0.13-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr1	111913753	111913754	rs117379618	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	1p13.2	OVGP1, PGCP1, PIFO	rs117379618-?	NR	2E-6		0.1741	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1439	chr1	111946957	111946958	rs1539581	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1p13.2	ATP5F1	rs1539581-?		2E-8				Illumina [563980]	N
1439	chr1	111962255	111962256	rs17027633	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1p13.2	ATP5F1	rs17027633-?		3E-8				Illumina [563980]	N
1439	chr1	112049949	112049950	rs41320847	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p13.2	NR	rs41320847-?	NR	1E-138				Affymetrix [NR]	N
1439	chr1	112056877	112056878	rs111431452	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy intake	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	1p13.2	ADORA3	rs111431452-A	0.02	4E-8	(Overweight/Obese)	145.0	[94-197] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
1440	chr1	112107668	112107669	rs10776733	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	ADORA3	rs10776733-A	0.36	7E-6	(Fat mass deposition )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1440	chr1	112107668	112107669	rs10776733	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	ADORA3	rs10776733-A	0.36	7E-6	(Fat mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1440	chr1	112107668	112107669	rs10776733	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	ADORA3	rs10776733-A	0.36	7E-6	(Energy storage )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1440	chr1	112125712	112125713	rs10494136	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs10494136-A	0.4978	1E-12		0.115	[0.083-0.147] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1440	chr1	112127163	112127164	rs72981097	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs72981097-A	0.35	4E-15		0.0924	[0.069-0.115] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1440	chr1	112133909	112133910	rs2800881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p13.2		rs2800881-T	NR	8E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1440	chr1	112143034	112143035	rs2800883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p13.2	LINC01160, RAP1A	rs2800883-C	0.377508	6E-10		0.014140979	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr1	112143898	112143899	rs2789546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.2		rs2789546-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1440	chr1	112152601	112152602	rs2477425	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p13.2	Intergenic	rs2477425-T	0.5703	4E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1440	chr1	112158503	112158504	rs12024366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.2		rs12024366-A	0.7671	4E-12	(conditional-joint)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1440	chr1	112158503	112158504	rs12024366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.2	Intergenic	rs12024366-A	0.7671	2E-12	(MTAG)	0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1440	chr1	112159303	112159304	rs71673426	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	1p13.2	RAP1A	rs71673426-C	0.013	2E-8				Illumina [7300000] (imputed)	N
1440	chr1	112161488	112161489	rs4839155	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.2		rs4839155-T	0.7671	5E-12		0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1440	chr1	112185276	112185277	rs2477432	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1p13.2		rs2477432-A	0.5746	8E-7		33.81724	z score increase	NR [6814003]	N
1440	chr1	112185276	112185277	rs2477432	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1p13.2	RAP1A	rs2477432-?	NR	3E-8		0.011372222	[0.0074-0.0154] unit increase	NR [7306098]	N
1440	chr1	112192121	112192122	rs494453	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	1p13.2	RAP1A	rs494453-C	0.24	4E-8	(NW, men & women)			Affymetrix [433510]	N
1440	chr1	112195090	112195091	rs473068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs473068-G	0.155267	1E-13				Affymetrix, Illumina [24649327] (imputed)	N
1441	chr1	112218092	112218106	rs139684765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p13.2		rs139684765-T	NR	7E-9		0.0195	[0.013-0.026] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1441	chr1	112222701	112222702	rs534888	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	1p13.2	RAP1A	rs534888-?	NR	7E-6		1.0526316	[1.03-1.09]	NR [7424691] (imputed)	N
1441	chr1	112258251	112258252	rs12038204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.2	Intergenic	rs12038204-A	0.573	2E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1441	chr1	112262825	112262826	rs488200	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	1p13.2	RAP1A, FAM212B	rs488200-T	0.451	4E-8		1.31		NR [4335144] (imputed)	N
1441	chr1	112263215	112263216	rs6698691	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p13.2		rs6698691-G	0.48	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1441	chr1	112267499	112267500	rs197429	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p13.2		rs197429-T	0.23331	1E-8		0.1669	[0.11-0.22] unit increase	Illumina [18238311] (imputed)	N
1441	chr1	112273025	112273026	rs2076586	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.2	NR	rs2076586-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1441	chr1	112273025	112273026	rs2076586	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p13.2	NR	rs2076586-T	0.2321	6E-11		0.0141	[0.0098-0.0184] unit decrease	NR [~ 27400000] (imputed)	N
1441	chr1	112273484	112273485	rs1546924	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p13.2	NA	rs1546924-T	0.4997	2E-17		0.0139	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
1441	chr1	112273484	112273485	rs1546924	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p13.2	NA	rs1546924-T	0.4997	2E-17		0.0139	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
1441	chr1	112273484	112273485	rs1546924	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p13.2	FAM212B	rs1546924-T	0.485	5E-6		0.014	[0.0078-0.02] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1441	chr1	112274161	112274162	rs6658723	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	1p13.2	FAM212B	rs6658723-T	0.02	3E-7		1.02	[1.01-1.03]	Affymetrix [7745390] (imputed)	N
1441	chr1	112274161	112274162	rs6658723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p13.2	NA	rs6658723-T	0.4332	2E-13		0.0145	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1441	chr1	112277596	112277597	rs1000947	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1p13.2	NR	rs1000947-G	NR	4E-7		0.01084	[0.0066-0.015] unit increase	Illumina [~ 540852]	N
1441	chr1	112282872	112282873	rs3754028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.2	NR	rs3754028-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1441	chr1	112283654	112283655	rs197441	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1p13.2	FAM212B-AS1	rs197441-?	NR	4E-10			[NR]	NR [NR] (imputed)	N
1441	chr1	112289982	112289983	rs197374	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p13.2	NR	rs197374-C	0.5929	8E-9		0.0224	[0.015-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1441	chr1	112292302	112292303	rs197379	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p13.2	NR	rs197379-C	0.387	9E-9		0.0269	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1441	chr1	112308721	112308722	rs41310098	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	1p13.2	DDX20	rs41310098-?	0.063	9E-6				Illumina [308166]	N
1441	chr1	112308952	112308953	rs197412	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p13.2	NR	rs197412-T	NR	1E-6		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1441	chr1	112308952	112308953	rs197412	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1p13.2	DDX20	rs197412-C	0.40559999999999996	8E-13		0.0127	[0.0092-0.0162] unit increase	Illumina [246328]	N
1441	chr1	112313430	112313431	rs34519355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1p13.2		rs34519355-G	NR	1E-10		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1441	chr1	112313430	112313431	rs34519355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1p13.2		rs34519355-G	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1441	chr1	112313430	112313431	rs34519355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p13.2		rs34519355-G	NR	7E-12		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1441	chr1	112317511	112317512	rs197422	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1p13.2	KCND3	rs197422-C	0.3794	2E-9		0.015	[0.01-0.02] unit decrease	NR [NR]	N
1441	chr1	112318483	112318484	rs12033257	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1p13.2	KCND3	rs12033257-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
1441	chr1	112318483	112318484	rs12033257	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p13.2	KCND3	rs12033257-A	0.617867	5E-12		0.00980287	[0.007-0.0126] unit increase	Affymetrix [12370749]	N
1441	chr1	112318483	112318484	rs12033257	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.2	NR	rs12033257-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1441	chr1	112318483	112318484	rs12033257	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1p13.2	NA	rs12033257-A	0.6324	5E-17		0.0151	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1441	chr1	112324110	112324111	rs2618039	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (opioids)	22,982 European ancestry cases, 55,826 European ancestry controls	NA	1p13.2	KCND3	rs2618039-T	0.380661	3E-8		0.06122196	[0.04-0.083] unit increase	Affymetrix [7288503] (imputed)	N
1441	chr1	112324110	112324111	rs2618039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.2		rs2618039-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1441	chr1	112324110	112324111	rs2618039	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.2	Intergenic	rs2618039-A	0.6124	9E-12	(MTAG)	0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1441	chr1	112327143	112327144	rs1538389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.2		rs1538389-T	0.1894	1E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1441	chr1	112328244	112328245	rs653170	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1p13.2	NR	rs653170-C	0.640728	2E-9		0.0122604	[0.0082-0.0163] unit decrease	NR [NR]	N
1442	chr1	112329977	112329978	rs584096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs584096-T	0.81259	3E-8	(60 ms)	0.0409198	[0.027-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112347255	112347256	rs672757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.2	NR	rs672757-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1442	chr1	112358512	112358513	rs6692346	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 2 electroencephalogram power	191 European ancestry individuals	NA	1p13.2	NR	rs6692346-?	NR	2E-6		0.04	NR unit increase	Affymetrix [388620]	N
1442	chr1	112362644	112362645	rs2365669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1p13.2	NR	rs2365669-?	NR	2E-7		0.01363392	[0.0085-0.0188] unit increase	Illumina [30613845] (imputed)	N
1442	chr1	112379025	112379026	rs12129789	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	1p13.2		rs12129789-A	0.492699818	3E-9		1.0697888	[1.046200503-1.093908982]	Illumina [8919992] (imputed)	N
1442	chr1	112380135	112380136	rs602825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.2	DDX20	rs602825-?	NR	8E-6	(indole-3-propionate)	0.20034112	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	9E-17	(142 ms)	0.0790042	[0.06-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	9E-15	(132 ms)	0.0760154	[0.057-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	8E-15	(130 ms)	0.0753531	[0.057-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-18	(146 ms)	0.0822841	[0.064-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-17	(144 ms)	0.0800393	[0.061-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-14	(160 ms)	0.0715183	[0.053-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-13	(128 ms)	0.0703292	[0.052-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-12	(176 ms)	0.0639734	[0.045-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-12	(110 ms)	0.067051	[0.048-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-11	(194 ms)	0.060966	[0.042-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	7E-10	(202 ms)	0.0579724	[0.039-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	6E-12	(124 ms)	0.0673111	[0.049-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	6E-11	(174 ms)	0.0629498	[0.044-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	5E-17	(148 ms)	0.0800128	[0.061-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	5E-13	(180 ms)	0.0676712	[0.049-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	5E-13	(168 ms)	0.0681093	[0.049-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	4E-8	(92 ms)	0.0556959	[0.037-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	4E-15	(162 ms)	0.0734145	[0.055-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	4E-11	(186 ms)	0.0620037	[0.043-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	4E-10	(190 ms)	0.0598411	[0.041-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-9	(86 ms)	0.0590413	[0.04-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-9	(204 ms)	0.0555437	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-9	(198 ms)	0.0546979	[0.036-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-8	(210 ms)	0.052457	[0.034-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-8	(206 ms)	0.0526647	[0.034-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-14	(158 ms)	0.07267	[0.054-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-14	(156 ms)	0.0722831	[0.054-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-13	(178 ms)	0.0677538	[0.049-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-12	(166 ms)	0.0667581	[0.048-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-12	(154 ms)	0.0657744	[0.047-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-12	(112 ms)	0.0680884	[0.049-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-11	(152 ms)	0.0635997	[0.045-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-11	(126 ms)	0.0656198	[0.047-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	3E-10	(192 ms)	0.0594849	[0.041-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-9	(200 ms)	0.0557485	[0.037-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-8	(88 ms)	0.0555849	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-14	(134 ms)	0.0738311	[0.055-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-14	(120 ms)	0.0757874	[0.057-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-13	(170 ms)	0.0692234	[0.05-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-13	(150 ms)	0.0703296	[0.052-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-13	(138 ms)	0.0686447	[0.05-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-13	(122 ms)	0.072449	[0.054-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	2E-11	(188 ms)	0.0622859	[0.043-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-8	(84 ms)	0.0566287	[0.038-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-15	(140 ms)	0.0754929	[0.057-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-14	(118 ms)	0.0743988	[0.056-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-13	(164 ms)	0.0704595	[0.052-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-12	(172 ms)	0.0661941	[0.047-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-12	(136 ms)	0.0688558	[0.05-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-11	(182 ms)	0.0635911	[0.045-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112381105	112381106	rs12142815	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs12142815-C	0.90757	1E-10	(184 ms)	0.0605713	[0.042-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1442	chr1	112392359	112392360	rs12044963	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	1p13.2	KCND3	rs12044963-T	NR	1E-12		1.15	[1.11-1.20]	NR [2286360] (imputed)	N
1442	chr1	112392359	112392360	rs12044963	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p13.2	KCND3	rs12044963-T	0.18	2E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1442	chr1	112392359	112392360	rs12044963	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	1p13.2	KCND3	rs12044963-A	0.502	4E-15		1.11	[1.082-1.14]	Illumina [5018049] (imputed)	N
1442	chr1	112392359	112392360	rs12044963	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	1p13.2	KCND3	rs12044963-A		9E-10	(AA)			Illumina [NR]	N
1442	chr1	112393243	112393244	rs11587564	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.2	DDX20	rs11587564-?	NR	5E-7	(LPC 20:4)	0.5849087	[0.36-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
1442	chr1	112413021	112413022	rs597205	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	1p13.2	C1orf183	rs597205-T	NR	8E-9	(OTU13305 FecalibacteriumSpecies-level OTU)	0.62	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1442	chr1	112416362	112416363	rs2788612	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	1p13.2	KCND3	rs2788612-?	0.05	6E-16	(Prostate cancer, rectal incontinence, univariable analysis)	0.18	[NR] unit increase	Illumina [2417493] (imputed)	N
1442	chr1	112437343	112437344	rs2798334	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	P wave duration	16,468 European ancestry individuals	NA	1p13.2	KCND3	rs2798334-T	0.289	8E-11		0.918	[0.64-1.19] unit decrease	Illumina [2300000] (imputed)	N
1442	chr1	112437343	112437344	rs2798334	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1p13.2	KCND3	rs2798334-C	0.73	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1442	chr1	112451446	112451447	rs2120436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1p13.2		rs2120436-T	NR	7E-14		0.0835	[0.062-0.105] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1442	chr1	112454821	112454822	rs12090194	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	1p13.2	KCND3	rs12090194-T	0.32	6E-19	(EA)	119.0	[93.52-144.48] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1443	chr1	112460261	112460262	rs4839185	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	1p13.2	KCND3	rs4839185-C	0.31	3E-20		117.0	[91.52-142.48] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1443	chr1	112461901	112461902	rs1443926	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p13.2	KCND3	rs1443926-A	0.68	4E-9	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-40	(184 ms)	0.0823962	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-38	(82 ms)	0.0815552	[0.069-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-37	(40 ms)	0.0821545	[0.069-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-35	(44 ms)	0.0799423	[0.067-0.093] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-16	(234 ms)	0.0517195	[0.039-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-15	(236 ms)	0.0492238	[0.037-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	9E-11	(248 ms)	0.0424571	[0.03-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-62	(152 ms)	0.103716	[0.091-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-48	(98 ms)	0.0912165	[0.079-0.104] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-36	(192 ms)	0.0781776	[0.066-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-33	(72 ms)	0.07545	[0.063-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-28	(26 ms)	0.0720327	[0.059-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-18	(230 ms)	0.0537892	[0.041-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	8E-12	(244 ms)	0.0441973	[0.031-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	7E-56	(158 ms)	0.0987011	[0.086-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	7E-49	(100 ms)	0.0924104	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	7E-47	(106 ms)	0.0903945	[0.078-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	7E-33	(196 ms)	0.0750054	[0.062-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	7E-20	(224 ms)	0.0573013	[0.045-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	6E-52	(114 ms)	0.0951508	[0.083-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	6E-37	(84 ms)	0.0795255	[0.067-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	6E-32	(52 ms)	0.0764499	[0.064-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	6E-14	(240 ms)	0.04842	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	6E-13	(-120 ms)	0.046673	[0.034-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-59	(126 ms)	0.10081	[0.088-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-58	(136 ms)	0.100849	[0.088-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-38	(92 ms)	0.0812264	[0.069-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-37	(42 ms)	0.0826367	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-33	(36 ms)	0.0778822	[0.065-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-31	(32 ms)	0.0757092	[0.063-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-28	(202 ms)	0.0684946	[0.056-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	5E-26	(208 ms)	0.0673248	[0.055-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-9	(252 ms)	0.0386193	[0.026-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-8	(254 ms)	0.0360298	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-60	(132 ms)	0.1022	[0.09-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-59	(156 ms)	0.100998	[0.088-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-56	(168 ms)	0.097645	[0.085-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-54	(124 ms)	0.0967998	[0.084-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-49	(108 ms)	0.0926171	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-40	(186 ms)	0.0824968	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-39	(86 ms)	0.0819092	[0.069-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-37	(188 ms)	0.07985	[0.067-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-35	(78 ms)	0.0781881	[0.066-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-33	(74 ms)	0.0755337	[0.063-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-31	(198 ms)	0.0725099	[0.06-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-30	(70 ms)	0.0740008	[0.061-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-11	(246 ms)	0.0427466	[0.03-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	4E-10	(250 ms)	0.0411422	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-62	(130 ms)	0.103991	[0.091-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-60	(150 ms)	0.102713	[0.09-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-60	(146 ms)	0.102106	[0.09-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-59	(148 ms)	0.100939	[0.088-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-53	(160 ms)	0.096456	[0.084-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-52	(122 ms)	0.0961689	[0.084-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-52	(116 ms)	0.0949523	[0.082-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-48	(172 ms)	0.091261	[0.079-0.104] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-46	(104 ms)	0.089672	[0.077-0.102] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-44	(96 ms)	0.0877563	[0.075-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-38	(80 ms)	0.0820791	[0.069-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-34	(38 ms)	0.079398	[0.067-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-34	(190 ms)	0.0777717	[0.065-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-32	(34 ms)	0.0771141	[0.064-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-30	(48 ms)	0.0742974	[0.062-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-30	(30 ms)	0.0748163	[0.062-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-29	(200 ms)	0.070144	[0.058-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-23	(216 ms)	0.0618723	[0.049-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-19	(226 ms)	0.0560147	[0.043-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-18	(228 ms)	0.05421	[0.042-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-17	(232 ms)	0.0536379	[0.041-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-14	(238 ms)	0.0484974	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-13	(242 ms)	0.0468648	[0.034-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	3E-13	(-122 ms)	0.0474131	[0.035-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-60	(144 ms)	0.103867	[0.091-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-60	(134 ms)	0.102345	[0.09-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-59	(140 ms)	0.101958	[0.089-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-59	(138 ms)	0.101518	[0.089-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-53	(170 ms)	0.095662	[0.083-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-52	(120 ms)	0.0951465	[0.083-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-51	(118 ms)	0.0940332	[0.081-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-50	(162 ms)	0.0941165	[0.082-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-47	(102 ms)	0.0917159	[0.079-0.104] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-44	(178 ms)	0.0872663	[0.075-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-42	(180 ms)	0.0855637	[0.073-0.098] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-42	(174 ms)	0.0859249	[0.073-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-40	(94 ms)	0.0837214	[0.071-0.096] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-39	(182 ms)	0.082237	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-38	(90 ms)	0.082214	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-32	(50 ms)	0.0771013	[0.064-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-31	(46 ms)	0.0758772	[0.063-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-29	(54 ms)	0.073135	[0.06-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-28	(58 ms)	0.0718842	[0.059-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-28	(56 ms)	0.071884	[0.059-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-27	(206 ms)	0.0679365	[0.055-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-27	(204 ms)	0.0678383	[0.055-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-26	(210 ms)	0.0664655	[0.054-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-25	(212 ms)	0.0649823	[0.052-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-24	(214 ms)	0.0634613	[0.051-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-22	(218 ms)	0.0609966	[0.048-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	2E-21	(220 ms)	0.0595169	[0.047-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-62	(128 ms)	0.104922	[0.092-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-61	(154 ms)	0.103172	[0.091-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-60	(142 ms)	0.103421	[0.091-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-53	(166 ms)	0.0961539	[0.084-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-50	(164 ms)	0.0937272	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-50	(112 ms)	0.0939206	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-50	(110 ms)	0.0938559	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-43	(176 ms)	0.0855471	[0.073-0.098] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-40	(88 ms)	0.0837986	[0.071-0.096] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-34	(194 ms)	0.0771753	[0.065-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-33	(76 ms)	0.0760038	[0.063-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-29	(68 ms)	0.0706926	[0.058-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-29	(28 ms)	0.0743304	[0.062-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-27	(60 ms)	0.0694017	[0.057-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-25	(62 ms)	0.0662113	[0.054-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112462949	112462949	rs776293589	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs776293589-TCC	0.74243	1E-19	(222 ms)	0.0577206	[0.045-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1443	chr1	112464003	112464004	rs1545300	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	1p13.2	KCND3	rs1545300-C	0.68	8E-12		1.2195122	[0.78-0.87]	Affymetrix, Illumina [up to 6976246] (imputed)	N
1443	chr1	112464003	112464004	rs1545300	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p13.2	KCND3	rs1545300-C	0.691	1E-14		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1443	chr1	112464375	112464376	rs17029069	22683750	Sinner MF	2012-06-06	Heart Rhythm	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Early cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	1p13.2	KCND3	rs17029069-T	0.356	8E-6		1.29	[1.15-1.44]	Affymetrix, Illumina [2523555] (imputed)	N
1443	chr1	112481666	112481667	rs72694622	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p13.2	NR	rs72694622-?	NR	4E-8				Illumina [7760689] (imputed)	N
1443	chr1	112522697	112522698	rs71673444	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p13.2	KCND3	rs71673444-T	NR	2E-8		1.29895	[0.85-1.75] unit increase	Illumina [NR] (imputed)	N
1443	chr1	112530429	112530430	rs75013985	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	1p13.2	KCND3	rs75013985-G	0.033	1E-13		4.09	[3.00-5.18] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1443	chr1	112560236	112560237	rs116532272	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1p13.2	KCND3	rs116532272-G	0.9783	7E-49		3.7446	[3.25-4.24] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1443	chr1	112560236	112560237	rs116532272	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1p13.2	KCND3	rs116532272-G	0.986	9E-10		0.14	[0.095-0.185] unit increase	Affymetrix [~ 9000000] (imputed)	N
1444	chr1	112592671	112592672	rs269071	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	1p13.2		rs269071-A	0.63	4E-10		0.031	[0.021-0.041] unit increase	Affymetrix [8918919] (imputed)	N
1444	chr1	112610894	112610895	rs12143327	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p13.2	LOC643355, AF357532	rs12143327-A	0.081	5E-8		3.14	[2.05-4.83]	Illumina [1556551]	N
1444	chr1	112651029	112651030	rs391268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p13.2	NR	rs391268-G	0.755035	4E-10		0.014082	[0.0097-0.0185] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1444	chr1	112657829	112657830	rs458699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p13.2		rs458699-A	0.756302	4E-15		0.020585826	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1444	chr1	112657829	112657830	rs458699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2		rs458699-A	0.756312	6E-18		0.022385037	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	9E-18	(46 ms)	0.210879	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	9E-16	(198 ms)	0.194096	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	9E-14	(200 ms)	0.181979	[0.13-0.23] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	9E-12	(208 ms)	0.170985	[0.12-0.22] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	8E-33	(150 ms)	0.282981	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	8E-20	(90 ms)	0.221424	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	7E-32	(120 ms)	0.283105	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	7E-30	(162 ms)	0.268282	[0.22-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	7E-30	(128 ms)	0.27306	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	7E-10	(216 ms)	0.152734	[0.1-0.2] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	6E-34	(148 ms)	0.285952	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	6E-31	(160 ms)	0.274847	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	6E-30	(166 ms)	0.271697	[0.22-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	6E-28	(110 ms)	0.26496	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	6E-17	(72 ms)	0.204712	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-33	(142 ms)	0.282784	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-31	(158 ms)	0.274818	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-30	(156 ms)	0.269262	[0.22-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-25	(172 ms)	0.245409	[0.2-0.29] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-22	(94 ms)	0.234393	[0.19-0.28] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	5E-13	(202 ms)	0.176798	[0.13-0.22] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-30	(152 ms)	0.271448	[0.22-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-30	(122 ms)	0.27594	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-30	(116 ms)	0.270438	[0.22-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-26	(100 ms)	0.253783	[0.21-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-21	(40 ms)	0.226506	[0.18-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-20	(86 ms)	0.222175	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-19	(92 ms)	0.217281	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-18	(32 ms)	0.207534	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-17	(78 ms)	0.20699	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-17	(58 ms)	0.206666	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-14	(66 ms)	0.186176	[0.14-0.23] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-14	(64 ms)	0.186955	[0.14-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	4E-14	(50 ms)	0.185529	[0.14-0.23] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-9	(220 ms)	0.147362	[0.099-0.195] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-9	(218 ms)	0.147621	[0.1-0.195] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-35	(134 ms)	0.295729	[0.25-0.34] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-33	(126 ms)	0.285828	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-32	(124 ms)	0.280767	[0.23-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-31	(144 ms)	0.278096	[0.23-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-31	(132 ms)	0.277669	[0.23-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-29	(154 ms)	0.267251	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-28	(106 ms)	0.26647	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-26	(102 ms)	0.254725	[0.21-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-21	(88 ms)	0.229723	[0.18-0.28] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-21	(42 ms)	0.228832	[0.18-0.28] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-19	(190 ms)	0.221374	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-18	(192 ms)	0.208462	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-17	(84 ms)	0.205332	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-17	(76 ms)	0.207762	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-17	(74 ms)	0.206148	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-17	(196 ms)	0.204111	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-17	(194 ms)	0.203377	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	3E-16	(56 ms)	0.200636	[0.15-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-8	(222 ms)	0.146712	[0.099-0.195] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-33	(136 ms)	0.288117	[0.24-0.34] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-32	(146 ms)	0.280764	[0.23-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-32	(118 ms)	0.283086	[0.24-0.33] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-31	(138 ms)	0.275676	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-29	(164 ms)	0.266121	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-28	(168 ms)	0.266076	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-28	(130 ms)	0.265953	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-27	(104 ms)	0.26057	[0.21-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-25	(98 ms)	0.25351	[0.21-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-25	(176 ms)	0.248346	[0.2-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-24	(174 ms)	0.247211	[0.2-0.29] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-22	(182 ms)	0.233074	[0.19-0.28] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-20	(188 ms)	0.222949	[0.18-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-17	(36 ms)	0.204635	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-16	(82 ms)	0.200977	[0.15-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-16	(26 ms)	0.199272	[0.15-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-15	(70 ms)	0.194528	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-15	(62 ms)	0.19528	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-15	(48 ms)	0.195503	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-14	(68 ms)	0.189202	[0.14-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	2E-10	(214 ms)	0.15931	[0.11-0.21] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-31	(140 ms)	0.276889	[0.23-0.32] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-28	(114 ms)	0.26509	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-28	(112 ms)	0.267183	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-27	(108 ms)	0.264934	[0.22-0.31] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-25	(170 ms)	0.251413	[0.2-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-24	(96 ms)	0.251549	[0.2-0.3] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-24	(178 ms)	0.24567	[0.2-0.29] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-23	(180 ms)	0.240915	[0.19-0.29] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-20	(184 ms)	0.220463	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-19	(44 ms)	0.220639	[0.17-0.27] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-19	(186 ms)	0.214214	[0.17-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-18	(38 ms)	0.212616	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-17	(60 ms)	0.208685	[0.16-0.26] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-17	(34 ms)	0.205242	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-17	(30 ms)	0.203803	[0.16-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-16	(80 ms)	0.201417	[0.15-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-16	(28 ms)	0.199064	[0.15-0.25] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-15	(54 ms)	0.196497	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-14	(52 ms)	0.189614	[0.14-0.24] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-12	(206 ms)	0.171634	[0.12-0.22] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-12	(204 ms)	0.172922	[0.13-0.22] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-11	(210 ms)	0.167026	[0.12-0.21] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112681991	112681992	rs115286434	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.2	KCND3	rs115286434-G	0.98598	1E-10	(212 ms)	0.162934	[0.12-0.21] unit increase	Affymetrix [10000000] (imputed)	N
1444	chr1	112708721	112708722	rs10745324	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p13.2	NR	rs10745324-G	0.649	2E-9		0.00698752	[0.0047-0.0093] unit decrease	NR [9732723] (imputed)	N
1444	chr1	112717001	112717002	rs144648928	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	1p13.2		rs144648928-A	0.02297	2E-6		2.343	[1.644-3.339]	Affymetrix [7975321] (imputed)	N
1445	chr1	112777452	112777453	rs115594097	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	1p13.2	NR	rs115594097-T	0.0147235	7E-6		1.062	[1.03-1.09]	Affymetrix [7791636] (imputed)	N
1445	chr1	112813677	112813678	rs2998333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p13.2	Intergenic	rs2998333-A	0.8877	6E-9	(MTAG)	0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1445	chr1	112814945	112814946	rs113817060	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1p13.2	NR	rs113817060-?	NR	3E-8				Illumina [7760689] (imputed)	N
1445	chr1	112815068	112815069	rs11102448	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs11102448-T	0.1289	1E-36		0.2075	[0.18-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1445	chr1	112821183	112821184	rs9429468	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.2	Intergenic	rs9429468-A	0.6966	1E-9	(MTAG)	0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1446	chr1	112853016	112853017	rs114947355	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	1p13.2	CTTNBP2NL	rs114947355-T	NR	9E-7		1.56	[1.42-1.70]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1446	chr1	112856569	112856570	rs7555668	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	1p13.2	RP5-965F6.2	rs7555668-?	NR	3E-6	(Symbol Search)			Illumina [up to 563855]	N
1446	chr1	112930005	112930006	rs12080074	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p13.2	CTTNBP2NL	rs12080074-A	0.346336	3E-9		0.0114808	[0.0077-0.0153] unit increase	NR [13737936] (imputed)	N
1446	chr1	112945782	112945783	rs12119865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p13.2		rs12119865-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1446	chr1	112946902	112946903	rs2488757	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs2488757-T	0.8474	3E-16		0.1786	[0.14-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1447	chr1	113008220	113008221	rs1175646	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p13.2	NR	rs1175646-?	NR	3E-104				Affymetrix [NR]	N
1447	chr1	113010807	113010808	rs2488786	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p13.2		rs2488786-?	NR	4E-9		0.011971	[0.0078-0.0162] unit increase	Affymetrix [20259828] (imputed)	N
1447	chr1	113023979	113023980	rs1620668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p13.2	ST7L, CAPZA1, MOV10	rs1620668-A	0.822	1E-12		0.535	[0.39-0.68] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1447	chr1	113023979	113023980	rs1620668	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1p13.2	ST7L, CAPZA1, MOV10	rs1620668-A	0.822	9E-10		0.285	[0.19-0.38] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1447	chr1	113042821	113042822	rs12037987	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	1p13.2	WNT2B	rs12037987-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1447	chr1	113042821	113042822	rs12037987	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	1p13.2	WNT2B	rs12037987-?	NR	9E-7				NR [~ 8000000] (imputed)	N
1447	chr1	113042821	113042822	rs12037987	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	1p13.2	WNT2B	rs12037987-?	NR	2E-6				NR [~ 8000000] (imputed)	N
1447	chr1	113042821	113042822	rs12037987	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	1p13.2	WNT2B	rs12037987-?	NR	2E-8		0.02459	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1p13.2		rs10776752-T	NR	6E-13		0.0199	[0.014-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1p13.2		rs10776752-T	NR	4E-16		0.0789	[0.06-0.098] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p13.2	WNT2B	rs10776752-T	0.0719762	6E-11		0.10393464	[0.073-0.135] unit increase	Affymetrix [7288503] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p13.2		rs10776752-?	NR	5E-33				NR [~ 8900000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	WNT2B	rs10776752-T	0.3	5E-14	(Japanese)	0.6359	[0.47-0.8] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	1p13.2	WNT2B	rs10776752-T	0.2989	7E-7	(Japanese)	0.2892	[0.18-0.4] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	WNT2B	rs10776752-T	0.2989	1E-13	(Japanese)	0.4411	[0.32-0.56] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	1p13.2	WNT2B	rs10776752-T	0.2989	3E-18	(Japanese)	0.1295	[0.1-0.16] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	WNT2B	rs10776752-T	0.2989	2E-10	(Japanese)	0.3434	[0.24-0.45] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113044327	113044328	rs10776752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	1p13.2	WNT2B	rs10776752-?	NR	3E-9		0.02534	[0.017-0.034] unit increase	Illumina [6108953] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p13.2	WNT2B	rs351364-?	NR	4E-15	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p13.2	WNT2B	rs351364-?	NR	3E-23				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p13.2	WNT2B	rs351364-?	NR	1E-26				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p13.2	WNT2B	rs351364-?		6E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p13.2	WNT2B	rs351364-?	NR	4E-26				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1p13.2	WNT2B	rs351364-?	NR	2E-18	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p13.2	WNT2B	rs351364-?	NR	3E-28				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113045060	113045061	rs351364	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1p13.2	WNT2B	rs351364-?	NR	3E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr1	113046394	113046395	rs351365	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	1p13.2	WNT2B	rs351365-C	0.74	6E-6		1.1111112	[1.05-1.16]	Illumina [11381182] (imputed)	N
1447	chr1	113046394	113046395	rs351365	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	1p13.2	WNT2B	rs351365-C	0.743	7E-7		1.1235955	[1.08-1.18]	Illumina [866891] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	NR	3E-28		0.0309	[0.025-0.036] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	0.295301	1E-13		0.0273165	[0.02-0.035] unit increase	Illumina [13477770] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p13.2		rs3790604-A	0.294612818	8E-16		0.07287456	[0.055-0.091] unit increase	Illumina [13134967] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p13.2		rs3790604-A	NR	1E-32		0.0931	[0.078-0.108] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p13.2		rs3790604-A	NR	1E-21		0.0686	[0.054-0.083] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	NR	1E-26		0.0306	[0.025-0.036] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	0.295286	6E-14		0.0284593	[0.021-0.036] unit increase	Illumina [13477767] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	NR	2E-21		0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	1p13.2		rs3790604-A	0.295274	7E-11		0.0251589	[0.018-0.033] unit increase	Illumina [13477770] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p13.2	WNT2B	rs3790604-A	0.0725619	9E-23		0.1520593	[0.12-0.18] unit increase	Affymetrix [7288503] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p13.2	WNT2B	rs3790604-A	0.0727071	6E-19		0.10309992	[0.08-0.126] unit increase	Affymetrix [7288503] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p13.2		rs3790604-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p13.2	WNT2B	rs3790604-A	0.0813	2E-23		0.6346	[0.51-0.76] mmHg increase	Affymetrix [NR] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	NR	rs3790604-A	0.2975	4E-21	(East Asian)	0.6697	[0.53-0.81] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	1p13.2	WNT2B	rs3790604-A	0.2975	1E-9	(East Asian)	0.2931	[0.2-0.39] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	WNT2B	rs3790604-A	0.2974	4E-21	(East Asian)	0.4726	[0.37-0.57] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	1p13.2	WNT2B	rs3790604-A	0.2976	9E-23	(East Asian)	0.1255	[0.1-0.15] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	WNT2B	rs3790604-A	0.2974	4E-18	(East Asian)	0.3894	[0.3-0.48] unit increase	Illumina [6200000] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	1p13.2	WNT2B	rs3790604-?	NR	1E-12		0.03042	[0.022-0.039] unit increase	Illumina [6108953] (imputed)	N
1447	chr1	113046878	113046879	rs3790604	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	1p13.2	WNT2B	rs3790604-?	NR	6E-12		0.0298	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1447	chr1	113047177	113047178	rs72993045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	1p13.2		rs72993045-C	NR	2E-18		0.2013	[0.16-0.25] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1447	chr1	113047177	113047178	rs72993045	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	1p13.2	WNT2B	rs72993045-C	0.03029	2E-18		0.20128079	[0.16-0.25] unit increase	Affymetrix [7288503] (imputed)	N
1447	chr1	113052185	113052186	rs3790606	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.2	WNT2B	rs3790606-G	0.6473	4E-8	(men)	0.0337	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1447	chr1	113052185	113052186	rs3790606	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.2	WNT2B	rs3790606-G	0.6473	3E-6		0.0192	[0.011-0.027] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1447	chr1	113052185	113052186	rs3790606	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.2	WNT2B	rs3790606-G	0.6473	1E-7	(women)	0.0323	[0.02-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1447	chr1	113052185	113052186	rs3790606	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.2	WNT2B	rs3790606-?	0.6473	3E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1447	chr1	113052185	113052186	rs3790606	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p13.2	WNT2B	rs3790606-?	0.6473	1E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1447	chr1	113054658	113054659	rs351370	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	1p13.2	WNT2B	rs351370-?	NR	2E-8	(EA)	0.0773	[0.05-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1447	chr1	113054658	113054659	rs351370	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1p13.2	NR	rs351370-T	0.586551	2E-10		0.0162176	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p13.2	WNT2B	rs3790608-G	0.85171	4E-53		0.0394526	[0.034-0.044] unit decrease	NR [13737936] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p13.2		rs3790608-?	NR	4E-55				NR [~ 8900000] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p13.2		rs3790608-?	NR	2E-41		0.0387882	[0.033-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p13.2	WNT2B	rs3790608-G	0.849316	6E-13	(women)	0.0447176	[0.032-0.057] unit decrease	NR [17166351] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p13.2	WNT2B	rs3790608-G	0.849214	1E-18		0.0404588	[0.031-0.05] unit decrease	NR [17166351] (imputed)	N
1447	chr1	113055022	113055023	rs3790608	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p13.2	WNT2B	rs3790608-G	0.849097	2E-7	(men)	0.0354901	[0.022-0.049] unit decrease	NR [17166351] (imputed)	N
1447	chr1	113056989	113056990	rs3790609	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.2		rs3790609-T	0.1744	8E-9		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1447	chr1	113056989	113056990	rs3790609	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.2	Intergenic	rs3790609-T	0.1744	1E-8	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1447	chr1	113061958	113061959	rs1006298	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p13.2		rs1006298-?	NR	2E-10		0.013089	[0.009-0.0172] unit decrease	Affymetrix [20259828] (imputed)	N
1447	chr1	113063124	113063125	rs910697	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	1p13.2	PRDM16	rs910697-?		2E-9				NR [7428630] (imputed)	N
1447	chr1	113063124	113063125	rs910697	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p13.2	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs910697-?		6E-9				NR [7428630] (imputed)	N
1447	chr1	113063124	113063125	rs910697	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	1p13.2	WNT2B	rs910697-?	NR	3E-10	(EA)	0.0833	[0.057-0.109] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p13.2	WNT2B	rs2273368-T	NR	4E-10		0.0222757	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p13.2	NR	rs2273368-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p13.2	CAPZA1, MOV10, ST7L, WNT2B	rs2273368-T	0.196657	9E-19	(females)	0.03321	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p13.2	CAPZA1, MOV10, ST7L, WNT2B	rs2273368-T	0.196657	1E-8		0.01461	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p13.2	CAPZA1, MOV10, ST7L, WNT2B	rs2273368-T	0.196657	8E-7		0.01264	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1447	chr1	113063770	113063771	rs2273368	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1p13.2	CAPZA1, MOV10, ST7L, WNT2B	rs2273368-T	0.196657	7E-16	(females)	0.02999	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1447	chr1	113064467	113064468	rs6668533	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	1p13.2		rs6668533-A	0.24	4E-8		0.08	unit decrease	Illumina [2093892] (imputed)	N
1447	chr1	113064467	113064468	rs6668533	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	1p13.2		rs6668533-A	0.24	3E-7		0.08	unit decrease	Illumina [2398641] (imputed)	N
1447	chr1	113064528	113064529	rs149187988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p13.2		rs149187988-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1447	chr1	113068576	113068577	rs35147679	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1p13.2	NR	rs35147679-T		1E-10		0.12	[0.081-0.159] unit increase	NR [NR]	N
1447	chr1	113068721	113068722	rs114685215	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	1p13.2	ST7L	rs114685215-G	0.01	2E-7		0.3389	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1447	chr1	113082152	113082153	rs10857961	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p13.2		rs10857961-A	0.23	2E-31		11.67	z score increase	Affymetrix [9061022] (imputed)	N
1447	chr1	113082152	113082153	rs10857961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p13.2		rs10857961-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1447	chr1	113097849	113097849	rs35935752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p13.2	NR	rs35935752-I	0.474655	7E-37		0.024898	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1447	chr1	113098005	113098006	rs6679414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs6679414-T	0.473975	4E-35				Affymetrix, Illumina [17210439] (imputed)	N
1447	chr1	113098533	113098534	rs6658555	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1p13.2	ST7L	rs6658555-T	0.230911559009061	3E-7		0.2757918	[0.17-0.38] unit decrease	Illumina [247039]	N
1447	chr1	113098533	113098534	rs6658555	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1p13.2	ST7L-CAPZA1-MOV10	rs6658555-T	0.2451	1E-9		0.0238	unit decrease	Illumina [242296]	N
1447	chr1	113102397	113102398	rs60900293	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p13.2	DMRTA2, FAF1, CDKN2C	rs60900293-?		5E-11				NR [7428630] (imputed)	N
1447	chr1	113102397	113102398	rs60900293	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p13.2	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs60900293-?		3E-13				NR [7428630] (imputed)	N
1447	chr1	113110618	113110619	rs1001494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p13.2	ST7L	rs1001494-C	0.4748	2E-13		0.02645378	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1447	chr1	113113193	113113194	rs60579835	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Pancreatic cancer	442 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	1p13.2		rs60579835-T	0.468237803	1E-8		1.4807987	[1.294742339-1.69359157]	Illumina [8919992] (imputed)	N
1448	chr1	113117212	113117213	rs12406530	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1p13.2	ST7L	rs12406530-A	0.79	6E-10		6.2	z-score increase	Affymetrix [4314223] (imputed)	N
1448	chr1	113128211	113128212	rs12045227	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1p13.2	ST7L	rs12045227-G	0.8	2E-11				Affymetrix, Illumina [8002429] (imputed)	N
1448	chr1	113128211	113128212	rs12045227	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1p13.2	ST7L	rs12045227-?	NR	3E-11		0.1062	[0.075-0.137] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1448	chr1	113130058	113130059	rs12730156	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p13.2	NR	rs12730156-G	0.1666	1E-17				NR [9056863] (imputed)	N
1448	chr1	113130058	113130059	rs12730156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p13.2		rs12730156-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1448	chr1	113140582	113140583	rs12049572	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p13.2		rs12049572-C	0.23	1E-56		15.85	z score increase	Affymetrix [9061022] (imputed)	N
1448	chr1	113148266	113148267	rs12118370	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p13.2	ST7L	rs12118370-A	0.78	5E-10	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1448	chr1	113148266	113148267	rs12118370	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p13.2	ST7L	rs12118370-A	0.78	1E-19	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1448	chr1	113150643	113150644	rs7519368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p13.2	NR	rs7519368-T	0.727188	3E-25		0.0334167	[0.027-0.04] unit increase	Affymetrix [16580851] (imputed)	N
1448	chr1	113154399	113154400	rs7546094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs7546094-T	0.510013	6E-65				Affymetrix, Illumina [24588908] (imputed)	N
1448	chr1	113154399	113154400	rs7546094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p13.2	ST7L	rs7546094-T	0.4748	9E-31		0.04132653	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1448	chr1	113156860	113156860	rs112416932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p13.2		rs112416932-AAAAC	NR	3E-38		0.0252	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1448	chr1	113156860	113156860	rs112416932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1p13.2	ST7L	rs112416932-AAAAC	0.4645	5E-12		0.02553016	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1448	chr1	113157053	113157054	rs6700673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2	ST7L	rs6700673-T	0.474395	1E-91		0.04521634	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1448	chr1	113179596	113179597	rs6537747	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p13.2	CAPZA1	rs6537747-T	0.7286	2E-8		0.0107681	[0.007-0.0145] unit decrease	Affymetrix [11880941] (imputed)	N
1448	chr1	113181738	113181739	rs61818802	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1p13.2	CAPZA1	rs61818802-C	0.796	6E-10		0.097	[0.066-0.128] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1448	chr1	113183847	113183848	rs11102518	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1p13.2	NR	rs11102518-T	0.683505	3E-16		0.0114067	[0.0087-0.0141] unit increase	Affymetrix [16578495] (imputed)	N
1448	chr1	113184603	113184603	rs528855147	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p13.2	CAPZA1	rs528855147-T	0.7821	8E-15		0.124	[0.091-0.157] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1448	chr1	113188418	113188419	rs6690292	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1p13.2	CAPZA1	rs6690292-C	0.27149999999999996	2E-8		1.0250076		Affymetrix [11880941] (imputed)	N
1448	chr1	113189052	113189053	rs10745332	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	1p13.2	MOV10	rs10745332-A	0.82	3E-9		0.96	[0.61-1.31] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1448	chr1	113189052	113189053	rs10745332	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	1p13.2	MOV10	rs10745332-A	0.82	3E-9				Affymetrix, Illumina [2485448] (imputed)	N
1448	chr1	113189052	113189053	rs10745332	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	1p13.2	MOV10	rs10745332-A	0.82	8E-8		0.53	[0.33-0.73] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	CAPZA1	rs17030613-A	0.52	3E-10	(Japanese)	0.4689	[0.32-0.62] unit decrease	Illumina [6200000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	CAPZA1	rs17030613-A	0.5155	9E-11	(Japanese)	0.3422	[0.24-0.45] unit decrease	Illumina [6200000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	1p13.2	CAPZA1	rs17030613-A	0.5155	1E-10	(Japanese)	0.0835	[0.058-0.109] unit decrease	Illumina [6200000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	CAPZA1	rs17030613-A	0.5155	6E-9	(Japanese)	0.2773	[0.18-0.37] unit decrease	Illumina [6200000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p13.2	CAPZA1	rs17030613-A	0.8033	2E-8		0.0128	[0.0083-0.0173] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1p13.2	CAPZA1	rs17030613-A	0.7962	2E-12		0.115	[0.081-0.149] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	1p13.2	ST7L, CAPZA1	rs17030613-A	0.6817	7E-8		0.3193	[0.2-0.44] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	1p13.2	ST7L, CAPZA1	rs17030613-A	0.5301	6E-7	(East Asians)	0.4884	[0.3-0.67] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p13.2	ST7L, CAPZA1	rs17030613-C	0.49	8E-6	(Systolic)	0.49	[0.27-0.71] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1448	chr1	113190806	113190807	rs17030613	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	1p13.2	ST7L, CAPZA1	rs17030613-C	0.49	1E-8	(Diastolic)	0.38	[0.24-0.52] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1448	chr1	113196895	113196896	rs3790598	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p13.2		rs3790598-A	0.17	1E-21		9.54	z score increase	Affymetrix [9061022] (imputed)	N
1448	chr1	113196895	113196896	rs3790598	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p13.2	NR	rs3790598-A	0.165	1E-17				NR [9056863] (imputed)	N
1448	chr1	113196895	113196896	rs3790598	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	1p13.2		rs3790598-?	NR	5E-14				NR [9705931] (imputed)	N
1448	chr1	113196895	113196896	rs3790598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p13.2	NR	rs3790598-A	0.165518	1E-10		0.01615	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1448	chr1	113200670	113200671	rs3013439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.2	CAPZA1	rs3013439-G	0.525633	2E-28		0.024620678	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1448	chr1	113202416	113202417	rs2932536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1p13.2	CAPZA1	rs2932536-A	0.5261	2E-21		0.03455963	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1448	chr1	113202570	113202571	rs12120956	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p13.2	CAPZA1	rs12120956-A	0.229	2E-12		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1448	chr1	113208038	113208039	rs12046466	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	1p13.2	CAPZA1	rs12046466-?		2E-12	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p13.2	ST7L, CAPZA1, MOV10	rs2932538-G	0.741	2E-7	(EA, initial)	0.424	[0.27-0.58] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p13.2	ST7L, CAPZA1, MOV10	rs2932538-G	0.741	2E-8	(EA, initial)	0.278	[0.18-0.37] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p13.2	CAPZA1, MOV10	rs2932538-A		3E-7		0.227	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p13.2	CAPZA1, MOV10	rs2932538-A		7E-12		0.185	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	MOV10	rs2932538-G	0.75	1E-9		0.388	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	MOV10	rs2932538-G	0.75	3E-7		0.049	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	1p13.2	MOV10	rs2932538-G	0.75	1E-9		0.24	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1448	chr1	113216542	113216543	rs2932538	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	1p13.2	MOV10	rs2932538-G	0.74	8E-6	(Mean Arterial Pressure)	0.252	[0.14-0.36] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1448	chr1	113222455	113222456	rs2999154	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p13.2		rs2999154-G	0.475	2E-28				Affymetrix [10369434] (imputed)	N
1448	chr1	113227823	113227824	rs201989427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1p13.2		rs201989427-C	NR	2E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1448	chr1	113230757	113230758	rs2999159	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	1p13.2	MOV10	rs2999159-A	0.168544	1E-12		0.07438479	[0.054-0.095] unit decrease	Affymetrix [7288503] (imputed)	N
1448	chr1	113230757	113230758	rs2999159	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1p13.2	MOV10	rs2999159-A	0.17	2E-14	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1448	chr1	113230757	113230758	rs2999159	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p13.2	MOV10	rs2999159-A	0.17	1E-9	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1448	chr1	113230757	113230758	rs2999159	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1p13.2	MOV10	rs2999159-A	0.17	5E-20	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	MOV10	rs12129649-T	0.41	1E-11	(Japanese)	0.5358	[0.38-0.69] unit increase	Illumina [6200000] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	MOV10	rs12129649-T	0.4079	3E-12	(Japanese)	0.3907	[0.28-0.5] unit increase	Illumina [6200000] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	1p13.2	MOV10	rs12129649-T	0.4079	3E-13	(Japanese)	0.1011	[0.074-0.128] unit increase	Illumina [6200000] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1p13.2	MOV10	rs12129649-T	0.4079	4E-10	(Japanese)	0.3171	[0.22-0.42] unit increase	Illumina [6200000] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p13.2	MOV10	rs12129649-T	0.062	6E-19		0.548	[0.43-0.67] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1448	chr1	113231502	113231503	rs12129649	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1p13.2	MOV10	rs12129649-T	0.062	1E-10	(EA, initial)	0.638	[0.44-0.83] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1448	chr1	113233192	113233193	rs2999157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p13.2	MOV10	rs2999157-A	0.524778	1E-20		0.020894065	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1448	chr1	113233192	113233193	rs2999157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p13.2	NR	rs2999157-A	0.522704	2E-62		0.030511	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1448	chr1	113236086	113236087	rs902289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p13.2	MOV10	rs902289-T	0.524743	6E-41		0.030015478	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1448	chr1	113236680	113236681	rs3748656	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.2	MOV10	rs3748656-T	0.2402	9E-7	(EA, women)	0.0267	[0.016-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1448	chr1	113236680	113236681	rs3748656	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p13.2	MOV10	rs3748656-T	0.2402	6E-9	(EA)	0.0244	[0.016-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1448	chr1	113238665	113238665	rs71584764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1p13.2	NR	rs71584764-TA	0.20357800000000004	1E-8		0.00829606	[0.0055-0.0111] unit increase	Affymetrix [16582621] (imputed)	N
1448	chr1	113238665	113238665	rs71584764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1p13.2	NR	rs71584764-TA	0.20357800000000004	5E-10		0.00989755	[0.0069-0.0129] unit increase	Affymetrix [16582614] (imputed)	N
1448	chr1	113239477	113239478	rs2999158	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	1p13.2	MOV10	rs2999158-?		3E-18	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1448	chr1	113239477	113239478	rs2999158	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	1p13.2	MOV10	rs2999158-?	NR	2E-11	(EA)	0.0931	[0.066-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1448	chr1	113239477	113239478	rs2999158	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p13.2	NR	rs2999158-T	0.3256	7E-17	(Pericalcarine)	9.180784	[7.02-11.34] unit decrease	Affymetrix, Illumina [NR]	N
1448	chr1	113239477	113239478	rs2999158	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p13.2	NR	rs2999158-T	0.3256	5E-12	(Lingual)	12.898463	[9.24-16.55] unit decrease	Affymetrix, Illumina [NR]	N
1448	chr1	113239477	113239478	rs2999158	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1p13.2	NR	rs2999158-?	NR	1E-8	(right pericalcarine)			NR [9227495] (imputed)	N
1448	chr1	113239477	113239478	rs2999158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p13.2		rs2999158-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1448	chr1	113242121	113242122	rs1106287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p13.2		rs1106287-G	NR	2E-23		0.0144	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1448	chr1	113242121	113242122	rs1106287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p13.2		rs1106287-G	0.582994	2E-11		0.0135036	[0.0095-0.0175] unit decrease	Illumina [13479295] (imputed)	N
1448	chr1	113242121	113242122	rs1106287	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	1p13.2	MOV10	rs1106287-T	NR	3E-6		0.910192	[0.87-0.95]	Illumina [11610548] (imputed)	N
1448	chr1	113242121	113242122	rs1106287	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p13.2	MOV10	rs1106287-?	NR	2E-15		0.022731792	[0.017-0.028] unit decrease	Illumina [27896057] (imputed)	N
1448	chr1	113242487	113242488	rs3013431	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p13.2	MOV10	rs3013431-C	0.388477	1E-9		0.00870548	[0.0059-0.0115] unit increase	Affymetrix [12370749]	N
1449	chr1	113246729	113246730	rs76570619	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	1p13.2	RHOC	rs76570619-G	0.01	3E-7		0.3446	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1449	chr1	113248364	113248365	rs954679	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	1p13.2	RHOC, RP11-426L16.10	rs954679-?	NR	4E-10	(EA)	0.0838	[0.058-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1449	chr1	113248790	113248791	rs12144044	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1p13.2	RHOC	rs12144044-A	0.28	3E-8		0.0061	[0.0039-0.0083] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1449	chr1	113255455	113255456	rs34611728	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1p13.2	PPM1J	rs34611728-A	0.129	2E-25	(EA)	0.0055	[0.0045-0.0065] unit decrease	Affymetrix [NR] (imputed)	N
1449	chr1	113256367	113256368	rs12724682	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p13.2	NR	rs12724682-C	NR	6E-43		0.0492	[0.042-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1449	chr1	113256367	113256368	rs12724682	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1p13.2	NR	rs12724682-C	NR	7E-46		0.0511	[0.044-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1449	chr1	113256367	113256368	rs12724682	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p13.2	PPM1J	rs12724682-C	0.1289	4E-13		0.0203	[0.015-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1449	chr1	113258292	113258293	rs12736457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p13.2		rs12736457-G	NR	6E-42		0.0393	[0.034-0.045] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1449	chr1	113258292	113258293	rs12736457	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1p13.2	PPM1J	rs12736457-C	0.8711	6E-33		0.0054	[0.0044-0.0064] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1449	chr1	113258292	113258293	rs12736457	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1p13.2	PPM1J	rs12736457-C	0.8703	6E-34		0.0056	[0.0046-0.0066] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1449	chr1	113258292	113258293	rs12736457	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	1p13.2	PPM1J	rs12736457-G	0.13	2E-6		1.0655301	[1.04-1.09]	Affymetrix, Illumina [9585923] (imputed)	N
1449	chr1	113258680	113258681	rs12722725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1p13.2		rs12722725-T	0.872553	2E-13		0.0391155	[0.029-0.05] unit decrease	NR [11722792] (imputed)	N
1449	chr1	113258680	113258681	rs12722725	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1p13.2	PPM1J	rs12722725-T	0.878	4E-8		0.446	[0.29-0.6] unit increase	Affymetrix [NR] (imputed)	N
1449	chr1	113258680	113258681	rs12722725	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1p13.2	PPM1J	rs12722725-T	0.872	9E-18		0.0054	[0.0044-0.0064] unit increase	Affymetrix [NR] (imputed)	N
1449	chr1	113258680	113258681	rs12722725	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1p13.2	PPM1J	rs12722725-C	0.0844	4E-16		8.135	NR z score decrease	Illumina [26237160] (imputed)	N
1449	chr1	113258680	113258681	rs12722725	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1p13.2	RHOC	rs12722725-C	0.108	2E-8		0.5	[0.13-0.87] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1449	chr1	113313562	113313563	rs11590090	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	1p13.2	intergenic	rs11590090-?	NR	3E-6	(count)			Perlegen [429981]	N
1450	chr1	113416256	113416257	rs74512480	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	1p13.2	intergenic	rs74512480-?	NR	2E-7		7.11	[3.40-14.88]	Illumina [9380034] (imputed)	N
1450	chr1	113418414	113418415	rs1237670	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1p13.2	HP08777	rs1237670-A	0.7753	6E-9		5.815	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1450	chr1	113452232	113452233	rs7550843	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1p13.2	NR	rs7550843-?	NR	5E-6		0.0972325	[0.055-0.139] unit decrease	NR [13958389] (imputed)	N
1450	chr1	113463748	113463749	rs7542229	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1p13.2	NR	rs7542229-C		6E-12		0.1	[0.08-0.12] unit increase	NR [NR]	N
1450	chr1	113468824	113468825	rs72683442	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1p13.2	NR	rs72683442-?	NR	3E-7		0.12739	[0.079-0.176] unit increase	NR [13958389] (imputed)	N
1450	chr1	113477319	113477320	rs4839270	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1p13.2	FAM19A3, SLC16A1, LRIG2, SYT6	rs4839270-?		8E-20				Affymetrix, Illumina [NR] (imputed)	N
1450	chr1	113493414	113493415	rs55992320	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1p13.2	SLC16A1	rs55992320-?	NR	5E-18		0.6397	[0.48-0.8] unit increase	Affymetrix [11100000] (imputed)	N
1450	chr1	113501606	113501607	rs147836155	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	1p13.2	SLC16A1, SLC16A1-AS1	rs147836155-T	0.0129	2E-6		0.1346	NR unit increase	NR [NR] (imputed)	N
1451	chr1	113536046	113536047	rs773430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p13.2		rs773430-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1451	chr1	113591451	113591452	rs146580149	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1p13.2	LRIG2	rs146580149-A	0.951	1E-6	(EA)	0.244	[0.15-0.34] unit decrease	Illumina [NR] (imputed)	N
1451	chr1	113610357	113610358	rs35045268	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs35045268-A	0.5766	7E-37		0.1464	[0.12-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1452	chr1	113705168	113705169	rs116705532	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	1p13.2	NR	rs116705532-G		2E-6		0.4678	[0.28-0.66] SD units increase	NR [10700000] (imputed)	N
1452	chr1	113745602	113745603	rs2763870	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs2763870-A	0.5176	1E-12		0.1173	[0.085-0.15] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1453	chr1	113787381	113787382	rs144022376	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p13.2	LRIG2	rs144022376-C	0.0173073823412294	2E-6	(F_Sutterellaceae_HB)	1.4412	[0.85-2.03] unit decrease	Illumina [7711310] (imputed)	N
1453	chr1	113817666	113817667	rs57145876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.2		rs57145876-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1453	chr1	113899673	113899674	rs17031428	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.2	LRIG2	rs17031428-?	NR	4E-6	(LPE 20:4)	0.24088837	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1454	chr1	113934071	113934072	rs74434895	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p13.2	MAGI3	rs74434895-G	0.01	5E-7	(EA)	0.3653	[0.23-0.51] unit increase	Illumina [~ 9000000] (imputed)	N
1454	chr1	113934071	113934072	rs74434895	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p13.2	MAGI3	rs74434895-G	0.01	4E-7		0.3683	[0.23-0.51] unit increase	Illumina [~ 9000000] (imputed)	N
1454	chr1	113941678	113941678	rs5777156	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	1p13.2	MAGI3	rs5777156-A	0.24	9E-8		0.92	[0.89-0.95]	Illumina [484196]	N
1454	chr1	113980576	113980577	rs146750254	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p13.2	MAGI3	rs146750254-C	0.039	2E-12		1.22	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1455	chr1	114053117	114053118	rs17507884	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	1p13.2	MAGI3	rs17507884-?		1E-6		0.466	[NR] unit decrease	Illumina [5970354] (imputed)	N
1455	chr1	114063190	114063191	rs193209545	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MAGI3	rs193209545-?	NR	1E-9	(female)	1.36086	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1455	chr1	114072109	114072110	rs61819372	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p13.2	MAGI3	rs61819372-C	0.01	7E-7	(EA)	0.3691	[0.23-0.51] unit increase	Illumina [~ 9000000] (imputed)	N
1455	chr1	114072109	114072110	rs61819372	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1p13.2	MAGI3	rs61819372-C	0.01	5E-7		0.3731	[0.23-0.52] unit increase	Illumina [~ 9000000] (imputed)	N
1455	chr1	114078754	114078755	rs12065882	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	1p13.2	MAGI3	rs12065882-G	0.208448	1E-6		0.029793	[0.018-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1455	chr1	114078775	114078776	rs377112211	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs377112211-A	0.826	2E-19		0.1967	[0.15-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1455	chr1	114078778	114078779	rs376671198	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs376671198-A	0.8121	4E-39		0.1911	[0.16-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1455	chr1	114080070	114080071	rs2153977	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	1p13.2	MAGI3	rs2153977-C	0.68967	5E-8		1.0947216	[1.06-1.14]	NR [NR] (imputed)	N
1455	chr1	114080070	114080071	rs2153977	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	1p13.2	MAGI3	rs2153977-T	NR	4E-7		1.491		Illumina [514008]	N
1455	chr1	114085144	114085145	rs17508449	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	1p13.2	NR	rs17508449-C	NR	5E-6		1.1389521		Illumina [5546030] (imputed)	N
1455	chr1	114151846	114151847	rs17031716	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	1p13.2	MAGI3, PHTF1, RSBN1, PTPN22, BCL2L15, AP4B1, DCLRE1B, HIPK1, OLFML3	rs17031716-A	NR	7E-7		1.22532		Illumina [1233578] (imputed)	N
1456	chr1	114165756	114165757	rs2636006	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1p13.2	DCLRE1B, RSBN1, PTPN22, AP4B1, MAGI3, BCL2L15, PHTF1	rs2636006-?		4E-6				Illumina [9560910] (imputed)	N
1456	chr1	114166560	114166561	rs6669008	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	1p13.2	MAGI3	rs6669008-?	NR	5E-6		1.32	[NR]	Affymetrix [up to 10996499] (imputed)	N
1456	chr1	114173409	114173410	rs1230666	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1p13.2	MAGI3	rs1230666-G	0.166789	3E-7		1.06	[1.04-1.09]	NR [8126035] (imputed)	N
1456	chr1	114173409	114173410	rs1230666	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	1p13.2	MAGI3	rs1230666-G	0.8533	2E-9				NR [7320282]	N
1456	chr1	114173409	114173410	rs1230666	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	1p13.2	MAGI3	rs1230666-G	0.85	6E-9		0.3224	[0.21-0.43] years increase	NR [up to 9000000] (imputed)	N
1456	chr1	114173409	114173410	rs1230666	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p13.2	NR	rs1230666-G	0.8721	4E-10	(EA)	0.0592	[0.041-0.078] unit decrease	Illumina [~ 11800000] (imputed)	N
1456	chr1	114173409	114173410	rs1230666	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	1p13.2	MAGI3, PTPN22	rs1230666-A	NR	5E-6	(k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Coriobacteriales|f__Coriobacteriaceae|g__Eggerthella)	4.583178	unit decrease	Illumina [8100000] (imputed)	N
1456	chr1	114173409	114173410	rs1230666	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	1p13.2	MAG13, PTPN22	rs1230666-A	0.16	2E-8		0.0269	[0.014-0.039] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
1456	chr1	114226142	114226143	rs61742849	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	1p13.2	PHTF1, MAGI3	rs61742849-G	0.975	6E-6		0.179	[0.1-0.26] unit decrease	Illumina [6150213] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p13.2		rs6679677-A	NR	3E-15		0.0302	[0.023-0.038] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	1p13.2		rs6679677-A	NR	3E-19		0.3343	[0.26-0.41] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1p13.2		rs6679677-C	0.898	5E-31				Affymetrix [10369434] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1p13.2		rs6679677-C	0.898	3E-16				Affymetrix [10369434] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1p13.2		rs6679677-C	0.898	4E-8				Affymetrix [10369434] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1p13.2		rs6679677-C	0.898	7E-35				Affymetrix [10369434] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1p13.2		rs6679677-?	NR	3E-10		0.889667	[0.85-0.93]	NR [685523]	N
1457	chr1	114303807	114303808	rs6679677	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	1p13.2		rs6679677-?	NR	5E-34		0.1	NR unit decrease	NR [5896510] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1p13.2		rs6679677-A	NR	1E-145		1.81	[1.73-1.89]	NR [13810676] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	1p13.2	RSBN, PTPN22	rs6679677-A	NR	7E-30		1.49	[1.39-1.6]	Illumina [7461261] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p13.2	PHTF1	rs6679677-A	0.101192	3E-25		0.037880443	[0.031-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p13.2	PHTF1	rs6679677-A	0.101227	2E-16		0.030244133	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1p13.2	PHTF1	rs6679677-C	0.897934	7E-11		1.1	[1.07-1.13]	Affymetrix [7600000] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls	NA	1p13.2	RSBN1	rs6679677-A	0.102915	3E-19		0.33426782	[0.26-0.41] unit increase	Affymetrix [7288503] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1p13.2	PHTF1-RSBN1	rs6679677-A	NR	2E-28		1.34	[1.21-1.49]	Illumina [6450125] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	1p13.2	PTPN22	rs6679677-A	0.114	2E-6	(multiple-IA)	1.592		Illumina [131847]	N
1457	chr1	114303807	114303808	rs6679677	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	1p13.2	PTPN22	rs6679677-A	0.114	2E-6	(any IA)	1.46		Illumina [131847]	N
1457	chr1	114303807	114303808	rs6679677	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-?	NR	2E-23		1.41	[1.32-1.51]	Illumina [at least 5000000] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	1p13.2	PTPN22	rs6679677-A	0.09	2E-8		1.4	1.25-1.57	Affymetrix [at least 333035] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	1p13.2	NR	rs6679677-C	NR	9E-7		0.162	[0.098-0.226] SD units decrease	NR [10700000] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	1p13.2	RSBN1	rs6679677-?	NR	1E-53		1.41		Illumina [109572]	N
1457	chr1	114303807	114303808	rs6679677	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-A		1E-15		1.39	[NR]	Illumina [> 644674] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-A	0.09	8E-11				Illumina [7347414] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-A	0.095	1E-6		1.39	[1.22-1.58]	Illumina [95416]	N
1457	chr1	114303807	114303808	rs6679677	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-A	0.1	3E-25	(additive model)	1.59	[1.45-1.73]	Illumina [123003]	N
1457	chr1	114303807	114303808	rs6679677	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p13.2	DCLRE1B, PTPN22	rs6679677-C	0.907	2E-15		1.196	[1.129-1.268]	Affymetrix, Illumina [1230000] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	1p13.2	PHTF1, RSBN1, PTPN22	rs6679677-A	0.091	3E-13		1.361	[1.25-1.48]	Illumina [870065]	N
1457	chr1	114303807	114303808	rs6679677	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	1p13.2	PTPN22	rs6679677-A	NR	1E-40				Affymetrix [up to 335565]	N
1457	chr1	114303807	114303808	rs6679677	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	1p13.2	PTPN22	rs6679677-?	0.10	6E-42		1.79	[1.65-1.94]	Affymetrix, Illumina [at least 315971] (imputed)	N
1457	chr1	114303807	114303808	rs6679677	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	1p13.2	PTPN22	rs6679677-A	0.10	5E-26		1.82	[1.59-2.09]	Affymetrix [469557]	N
1457	chr1	114303807	114303808	rs6679677	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	1p13.2	PTPN22	rs6679677-A	0.10	6E-25		1.98	[1.72-2.27]	Affymetrix [469557]	N
1457	chr1	114303807	114303808	rs6679677	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	1p13.2	PHTF1, PTPN22	rs6679677-A	0.10	8E-24		1.89	[1.67-2.13]	Affymetrix [NR]	N
1457	chr1	114315492	114315493	rs12144309	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p13.2	RSBN1	rs12144309-T	0.188	6E-6		0.037	[0.021-0.053] unit decrease	Affymetrix [7947838] (imputed)	N
1457	chr1	114323514	114323515	rs149765041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.2	RSBN1	rs149765041-G	0.018595	1E-9		0.051178444	[0.035-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1457	chr1	114374965	114374966	rs12746551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p13.2		rs12746551-C	0.9689	1E-9		0.0248	[0.017-0.033] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1457	chr1	114374965	114374966	rs12746551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p13.2	Intergenic	rs12746551-C	0.9689	1E-8	(MTAG)	0.0219	[0.014-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	1p13.2		rs2476601-A	0.093	2E-12		1.49	[1.32-1.67]	Illumina [24006246] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	1p13.2	PTPN22	rs2476601-G	0.114224	4E-6		0.583	[0.464 - 0.733]	Illumina [5396854] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p13.2		rs2476601-G	NR	2E-34		0.048	[0.04-0.056] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	1E-50		0.4287	[0.37-0.48] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	6E-34		0.3076	[0.26-0.36] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p13.2		rs2476601-G	NR	5E-18		0.0338	[0.026-0.041] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	3E-169		0.414	[0.38-0.44] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	7E-9		0.1106	[0.073-0.148] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1p13.2		rs2476601-G	NR	6E-49		0.0575	[0.05-0.065] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	2E-117		0.3663	[0.34-0.4] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	5E-15		0.2961	[0.22-0.37] unit decrease	Affymetrix, Illumina [25841580] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	3E-45		0.3308	[0.28-0.38] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1p13.2		rs2476601-G	NR	6E-13		0.3856	[0.28-0.49] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	1p13.2		rs2476601-?	NR	3E-9		0.036	NR unit increase	NR [6490614] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	1p13.2		rs2476601-?	NR	8E-67		0.14	NR unit increase	NR [5890016] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	1p13.2	TPN22	rs2476601-A	0.11	6E-17		1.74	[1.53-1.98]	Illumina [7068382] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	1p13.2	AP4B1-AS1;PTPN22	rs2476601-A	0.101482	3E-10		0.1180737	[0.081-0.155] unit decrease	Affymetrix [7260263] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p13.2	NR	rs2476601-G	NR	2E-14		0.0305	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1p13.2	PTPN22	rs2476601-G	0.898855	2E-49		0.053824365	[0.047-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1p13.2	PTPN22	rs2476601-G	0.89885	8E-61		0.059990816	[0.053-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.90238	1E-64				Affymetrix, Illumina [24649327] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.899826	3E-67		0.052755	[0.047-0.059] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.899665	6E-33		0.038024	[0.032-0.044] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.899691	1E-10		0.019969	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.902093	1E-63				Affymetrix, Illumina [23472807] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p13.2	NR	rs2476601-G	0.899687	1E-67		0.054421	[0.048-0.061] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.097	2E-160		1.44	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1p13.2	PHTF1	rs2476601-G	0.91717	2E-14		1.1111112	[1.09-1.15]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.102931	3E-169		0.41397324	[0.38-0.44] unit increase	Affymetrix [7288503] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.102882	7E-9		0.11062864	[0.073-0.148] unit increase	Affymetrix [7288503] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.084	1E-12				NR [509413]	N
1457	chr1	114377567	114377568	rs2476601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.2		rs2476601-?	NR	1E-47				NR [~ 8900000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.2		rs2476601-?	NR	2E-173				NR [~ 8900000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	1p13.2		rs2476601-?	NR	2E-103				NR [~ 8900000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-?	NR	2E-28		1.3333333	[1.2-1.49]	Illumina [6450125] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.096	1E-91		2.004		Illumina [252970]	N
1457	chr1	114377567	114377568	rs2476601	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.094	4E-81		1.6220682		Illumina [252970]	N
1457	chr1	114377567	114377568	rs2476601	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	NA	6E-119				Illumina [252970]	N
1457	chr1	114377567	114377568	rs2476601	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p13.2	PTPN22	rs2476601-A	0.1	2E-149	(EA)	0.59584	[0.55-0.64] unit increase	Illumina [8380626] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	1p13.2	PTPN22	rs2476601-?	0.14	5E-16		1.529	[1.38-1.693]	Affymetrix, Illumina [8328843] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.12	4E-7		1.21	[1.12-1.30]	Illumina [> 10000000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p13.2	PTPN22	rs2476601-?	NR	1E-24		1.42	[1.28-1.57]	Illumina [at least 5000000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	1p13.2	PTPN22	rs2476601-A	0.1338	2E-12		0.12	NR SD units decrease	Illumina [21568490] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8983	2E-21		0.05610971	[0.045-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8984	5E-13		0.04275984	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8983	3E-13		0.04300217	[0.031-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8983	4E-13		0.04291787	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8984	6E-13		0.0427885	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8983	2E-21		0.05637879	[0.045-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1p13.2	PTPN22	rs2476601-G	0.8983	5E-13		0.04269255	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	1p13.2	PTPN22	rs2476601-A	0.09951	1E-18		1.383	[1.29-1.49]	Illumina [8966411] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1p13.2	PTPN22	rs2476601-?	0.091	8E-13	(EA)	1.39	[NR]	NR [6344733] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	1p13.2	PTPN22	rs2476601-?		2E-35	(same effect)	1.61	[NR]	NR [at least 309839] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-?	NR	2E-31		1.2722646	[1.22-1.32]	Illumina [13676411] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-?	NR	3E-12	(subset analysis)			Illumina [130052]	N
1457	chr1	114377567	114377568	rs2476601	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.11	7E-6		1.62	[1.31-1.99]	Illumina [6175472] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1p13.2	PTPN22	rs2476601-A		1E-28		1.43	[1.34-1.53]	Illumina [644674]	N
1457	chr1	114377567	114377568	rs2476601	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		1p13.2	PTPN22	rs2476601-A	0.09	8E-11		1.58	[1.38-1.81]	Illumina [90536]	N
1457	chr1	114377567	114377568	rs2476601	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		1p13.2	PTPN22	rs2476601-A	0.09	7E-9		1.32	[1.20-1.45]	Illumina [90536]	N
1457	chr1	114377567	114377568	rs2476601	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p13.2	NR	rs2476601-?	NR	4E-17	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	1p13.2	PHTF1, PTPN22	rs2476601-A	NR	7E-20		2.7073		Illumina [514008]	N
1457	chr1	114377567	114377568	rs2476601	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	1p13.2	PTPN22	rs2476601-A	0.09	1E-100		1.89		Illumina [135870]	N
1457	chr1	114377567	114377568	rs2476601	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	1p13.2	PTPN22	rs2476601-A	NR	9E-8		1.34		Illumina [1233578] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.11	2E-126		1.82	[1.74-1.92]	Illumina [133816] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	1p13.2	PTPN22	rs2476601-?		5E-33		1.77	[1.61-1.95]	Affymetrix, Illumina [1831729] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p13.2	PTPN22	rs2476601-A	0.09	9E-170	(EA)	1.8	[1.73-1.88]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p13.2	PTPN22, RSBN1	rs2476601-A	0.09	8E-77		1.7845		Illumina [129464] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	1p13.2	PTPN22, RSBN1	rs2476601-A	0.09	9E-62		1.5935		Illumina [129464] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	1p13.2	PTPN22	rs2476601-A	0.11	8E-10		1.71	[1.44-2.02]	Illumina [274256]	N
1457	chr1	114377567	114377568	rs2476601	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Hashimoto thyroiditis	462 European ancestry cases, 9,364 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.0962	4E-15		2.02	[1.69-2.41]	Illumina [103875]	N
1457	chr1	114377567	114377568	rs2476601	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.0962	4E-16		1.55	[1.41-1.71]	Illumina [103875]	N
1457	chr1	114377567	114377568	rs2476601	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	0.0962	1E-22		1.63	[1.49-1.78]	Illumina [103875]	N
1457	chr1	114377567	114377568	rs2476601	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	1p13.2	PTPN22	rs2476601-A	NR	2E-111		2.0	[NR]	Affymetrix, Illumina [NR]	N
1457	chr1	114377567	114377568	rs2476601	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	1p13.2	PTPN22	rs2476601-?	NR	1E-8	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1p13.2	PTPN22	rs2476601-G	0.907	4E-9		1.26	[1.17-1.37]	Affymetrix, Illumina [953241] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1p13.2	PTPN22	rs2476601-A	0.10	9E-74		1.94	[1.81-2.08]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	1p13.2	PTPN22	rs2476601-A	0.095	1E-7		1.39	[1.23-1.57]	Illumina [520460]	N
1457	chr1	114377567	114377568	rs2476601	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1p13.2	PTPN22	rs2476601-A	0.1	3E-12		1.35	[1.24-1.47]	Illumina [~ 2100000] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	19503088	Gregersen PK	2009-06-07	Nat Genet	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	1p13.2	PTPN22	rs2476601-?	NR	2E-21				Illumina [278502]	N
1457	chr1	114377567	114377568	rs2476601	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	1p13.2	PTPN22	rs2476601-?	NR	9E-85				Affymetrix, Illumina [841622] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1p13.2	PTPN22	rs2476601-G	0.90	1E-8		1.31	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1457	chr1	114377567	114377568	rs2476601	17804836	Plenge RM	2007-09-05	N Engl J Med	TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study.	Rheumatoid arthritis	1,522 European ancestry cases, 1,850 European ancestry controls	1,053 European ancestry cases, 1,858 European ancestry controls	1p13.2	PTPN22	rs2476601-?	0.10	2E-11		1.72	[NR]	Illumina [297086]	N
1457	chr1	114377567	114377568	rs2476601	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	1p13.2	PTPN22	rs2476601-A	0.09	1E-7		1.8	[1.44-2.24]	Illumina [543071]	N
1457	chr1	114377567	114377568	rs2476601	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	1p13.2	PTPN22	rs2476601-T	0.09	2E-80		1.98	[1.82-2.15]	Affymetrix [NR]	N
1457	chr1	114378562	114378562	rs35200954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1p13.2	NR	rs35200954-AT	NR	2E-9		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1457	chr1	114388803	114388804	rs1217403	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs1217403-?	0.75	4E-8		1.1566043		Illumina [252970]	N
1457	chr1	114388803	114388804	rs1217403	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs1217403-?	0.75	1E-10		1.1322253		Illumina [252970]	N
1457	chr1	114388803	114388804	rs1217403	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	1p13.2	PTPN22	rs1217403-C	NA	5E-11				Illumina [252970]	N
1457	chr1	114419488	114419489	rs11584821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.2	AP4B1-AS1	rs11584821-T	0.18017	2E-11		0.019287553	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr1	114429460	114429461	rs2358994	25936594	Tomer Y	2015-04-27	J Autoimmun	Genome wide identification of new genes and pathways in patients with both autoimmune thyroiditis and type 1 diabetes.	Type 1 diabetes and autoimmune thyroid diseases	346 European ancestry cases, 727 European ancestry controls	185 European ancestry cases, 340 European ancestry controls	1p13.2	BCL2L15	rs2358994-A	NR	2E-11		1.8688		Illumina [514008]	N
1458	chr1	114433945	114433946	rs1217393	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1p13.2	AP4B1	rs1217393-?	NR	5E-9		1.1235955	[1.09-1.18]	Illumina [6450125] (imputed)	N
1458	chr1	114443898	114443899	rs17464525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p13.2	AP4B1	rs17464525-A	0.185109	4E-11		0.0165797	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr1	114443898	114443899	rs17464525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p13.2		rs17464525-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1458	chr1	114444593	114444594	rs12079716	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	SYT6, AP4B1, PHTF1, MAGI3, OLFML3, RSBN1, PTPN22	rs12079716-C	0.0030	2E-6	(Total cysteine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1458	chr1	114445879	114445880	rs7513707	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p13.2	NR	rs7513707-A	0.1661	2E-11	(EA)	0.0554	[0.039-0.071] unit increase	Illumina [~ 11800000] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.2		rs11552449-T	NR	3E-9		0.0587	[0.039-0.078] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p13.2	DCLRE1B	rs11552449-?	NR	4E-10		0.0370867	[0.025-0.049] unit increase	Illumina [4804024] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p13.2		rs11552449-T	NR	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	1p13.2	DCLRE1B	rs11552449-C	0.826	6E-6		0.0134	[0.0075-0.0193] unit decrease	Affymetrix [11535925] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p13.2	DCLRE1B	rs11552449-T	0.17	5E-11	(EA)	1.04	[1.01-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1p13.2	NR	rs11552449-T	0.16	6E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1p13.2	NR	rs11552449-T	0.16	3E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1458	chr1	114448388	114448389	rs11552449	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p13.2	BCL2L15, AP4B1, DCLRE1B, HIPK1, PTPN22	rs11552449-T	0.17	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1458	chr1	114448751	114448752	rs10858023	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cardiovascular disease	15,009 European ancestry cases, 41,628 European ancestry controls	NA	1p13.2		rs10858023-T	0.3495787	3E-8		1.09		Affymetrix [15613247] (imputed)	N
1458	chr1	114449661	114449662	rs3761936	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1p13.2		rs3761936-?	NR	3E-6		0.934562	[0.91-0.96]	NR [685523]	N
1458	chr1	114485906	114485907	rs114202211	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1p13.2	HIPK1	rs114202211-?	NR	5E-8	(subset analysis)			Illumina [130052]	N
1458	chr1	114489972	114489973	rs12127377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.2		rs12127377-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1458	chr1	114519350	114519351	rs10732635	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p13.2	HIPK1	rs10732635-T	0.55719	2E-9		0.011062	[0.0075-0.0147] unit increase	NR [13737936] (imputed)	N
1458	chr1	114519350	114519351	rs10732635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p13.2		rs10732635-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1458	chr1	114547662	114547663	rs1394074	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Severe carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	61 European ancestry cases, at least 804 European ancestry controls	NA	1p13.2	NR	rs1394074-?		1E-6		7.75	[3.41-17.61]	Illumina [NR]	N
1459	chr1	114607363	114607364	rs79079833	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p13.2	SYT6	rs79079833-G	0.011	2E-6	(Hcy )	0.03	[NR] umol/L increase	Illumina [899892]	N
1459	chr1	114651633	114651634	rs11291025	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs11291025-A	0.483	7E-24		0.115	[0.093-0.137] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1459	chr1	114662958	114662959	rs12732487	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	1p13.2	NR	rs12732487-?	NR	9E-7		0.3258	[0.2-0.46] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1459	chr1	114670968	114670969	rs2774307	23319801	Rafiq S	2013-01-14	Cancer Res	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 European ancestry early-onset cases	1,516 European ancestry early-onset cases	1p13.2	SYT6	rs2774307-?	0.26	8E-6		1.3	[1.16-1.47]	Illumina [487496]	N
1459	chr1	114677947	114677948	rs529989	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	1p13.2	NR	rs529989-C	0.443	6E-6		8.56	[NR] unit decrease	Illumina [527829]	N
1460	chr1	114715583	114715584	rs2774292	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p13.2	NR	rs2774292-?	NR	3E-6		2.0874	[NR]	Affymetrix [722112]	N
1460	chr1	114716692	114716693	rs2086963	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p13.2	NR	rs2086963-?	NR	2E-6				Affymetrix [NR]	N
1461	chr1	114874145	114874146	rs12097019	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs12097019-A	0.2973	1E-6		0.0963	[0.057-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1461	chr1	114905065	114905066	rs11808287	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1p13.2	RP4-591B8.3	rs11808287-T	NR	3E-7		0.503145	[0.31-0.69] unit increase	Illumina [NR] (imputed)	N
1461	chr1	114922789	114922790	rs9429742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p13.2	NR	rs9429742-T	0.254465	1E-28		0.024609	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1461	chr1	114922789	114922790	rs9429742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p13.2		rs9429742-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1461	chr1	114923635	114923636	rs9429539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1p13.2		rs9429539-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1461	chr1	114932864	114932865	rs9429544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1p13.2	TRIM33	rs9429544-C	0.255324	4E-20		0.023440279	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr1	114932864	114932865	rs9429544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p13.2	NR	rs9429544-G	0.743695	1E-14		0.016683	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1461	chr1	114932864	114932865	rs9429544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p13.2	NR	rs9429544-C	0.256326	2E-32		0.024702	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1461	chr1	114932864	114932865	rs9429544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p13.2	TRIM33	rs9429544-C	0.2571	3E-14		0.0310693	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1461	chr1	114941325	114941326	rs3789615	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p13.2	NR	rs3789615-C	0.58	5E-12		0.012	[0.0085-0.0155] unit increase	Affymetrix [2446094] (imputed)	N
1461	chr1	114941325	114941326	rs3789615	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p13.2	NR	rs3789615-C	0.58	5E-8				Affymetrix [2446094] (imputed)	N
1461	chr1	114948280	114948281	rs6537825	24189344	Xia K	2013-11-05	Mol Psychiatry	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios		TRIM33, BCAS2, DENND2C	rs6537825-A	NR	3E-8		1.4	[NR]	Illumina [702234] (imputed)	N
1462	chr1	114953419	114953420	rs6694768	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p13.2	NA	rs6694768-T	0.6817	2E-10		0.0121	[0.0084-0.0158] unit increase	NR [~ 27400000] (imputed)	N
1462	chr1	114958201	114958202	rs67882944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs67882944-G	0.197854	8E-12				Affymetrix, Illumina [24332387] (imputed)	N
1462	chr1	114958945	114958946	rs3789619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs3789619-C	0.209299	2E-27				Affymetrix, Illumina [20825802] (imputed)	N
1462	chr1	114973689	114973690	rs11585926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p13.2		rs11585926-C	NR	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1462	chr1	114973689	114973690	rs11585926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p13.2	TRIM33	rs11585926-C	0.249711	1E-9		0.015533943	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1462	chr1	114973689	114973690	rs11585926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p13.2		rs11585926-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1462	chr1	114979088	114979089	rs7516386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs7516386-C	0.215922	7E-32				Affymetrix, Illumina [24246363] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p13.2		rs2143583-T	0.747	4E-21		0.12	[-0.14--0.09] % decrease	Affymetrix [NR] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p13.2	TRIM33	rs2143583-G	0.253564	6E-20		0.023081655	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p13.2	TRIM33	rs2143583-G	0.253518	7E-23		0.0263283	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p13.2	TRIM33	rs2143583-G	0.25352	1E-20		0.023628596	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p13.2	NR	rs2143583-G	0.254725	2E-11		0.014377	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1462	chr1	114989210	114989211	rs2143583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p13.2		rs2143583-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1462	chr1	115008669	115008670	rs72696011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2	TRIM33	rs72696011-T	0.086454	1E-10		0.026038831	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1462	chr1	115032388	115032389	rs12083692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1p13.2		rs12083692-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1462	chr1	115032651	115032652	rs76701955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p13.2	TRIM33	rs76701955-C	0.250845	2E-11		0.01714773	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr1	115032651	115032652	rs76701955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs76701955-T	0.747792	6E-13				Affymetrix, Illumina [22063850] (imputed)	N
1462	chr1	115040931	115040932	rs11102800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA			rs11102800-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1462	chr1	115054289	115054290	rs74115213	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	1p13.2	TRIM33	rs74115213-T	NR	9E-6		4.439	NR z score decrease	Illumina [7839440] (imputed)	N
1462	chr1	115060825	115060826	rs35461065	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1p13.2		rs35461065-T	0.5397	8E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1462	chr1	115061583	115061584	rs11102807	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals		TRIM33, BCAS2	rs11102807-G	0.4639	8E-9		1.0221416		Affymetrix [11880941] (imputed)	N
1462	chr1	115062526	115062527	rs36092669	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p13.2	intergenic	rs36092669-C	0.386	5E-12		0.02519637	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1462	chr1	115064221	115064222	rs11102809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p13.2		rs11102809-G	NR	4E-20		0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1462	chr1	115064221	115064222	rs11102809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p13.2		rs11102809-G	NR	4E-18		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1462	chr1	115064221	115064222	rs11102809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2		rs11102809-G	0.372005	1E-12		0.016917665	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr1	115069250	115069251	rs139846391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2		rs139846391-T	0.043929	1E-13		0.041173447	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1463	chr1	115108913	115108914	rs6537835	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p13.2		rs6537835-A	0.84894	3E-8		0.2072	[0.13-0.28] unit decrease	Illumina [18351549] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	1p13.2		rs61753528-?	NR	5E-47		0.184736	[0.16-0.21] unit decrease	NR [9800000] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1p13.2		rs61753528-?	NR	7E-9		0.0694422	[0.044-0.094] unit decrease	NR [9800000] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	1p13.2		rs61753528-?	NR	2E-35		0.141566	[0.12-0.17] unit increase	NR [9800000] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2	DENND2C	rs61753528-G	0.00557700000000005	1E-41		0.20213392	[0.17-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.2	DENND2C	rs61753528-G	0.00557300000000005	6E-22		0.14333162	[0.11-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.2	NR	rs61753528-A	0.994648	1E-26				Affymetrix, Illumina [17210439] (imputed)	N
1463	chr1	115130507	115130508	rs61753528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p13.2	NR	rs61753528-A	0.994478	6E-29		0.143524	[0.12-0.17] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1463	chr1	115142869	115142870	rs149711393	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	1p13.2		rs149711393-?	NR	4E-36		0.133555	[0.11-0.16] unit decrease	NR [9800000] (imputed)	N
1463	chr1	115142869	115142870	rs149711393	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1p13.2		rs149711393-?	NR	4E-9		0.0614944	[0.04-0.083] unit decrease	NR [9800000] (imputed)	N
1463	chr1	115142869	115142870	rs149711393	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	1p13.2		rs149711393-?	NR	1E-29		0.115981	[0.096-0.136] unit increase	NR [9800000] (imputed)	N
1463	chr1	115142869	115142870	rs149711393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p13.2	DENND2C	rs149711393-A	0.007239	7E-48		0.19192141	[0.17-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1463	chr1	115142869	115142870	rs149711393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p13.2	DENND2C	rs149711393-A	0.00724000000000002	2E-20		0.1214697	[0.096-0.147] unit increase	Affymetrix [93095623] (imputed)	N
1463	chr1	115144898	115144899	rs184660829	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p13.2	DENND2C	rs184660829-C	2.0E-4	3E-8		8.05	[3.86-16.8]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1464	chr1	115216358	115216359	rs115092288	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	1p13.2		rs115092288-?	NR	1E-7		8.08829	[7.31-8.86]	NR [666300]	N
1464	chr1	115225292	115225293	rs7541903	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs7541903-A	0.0853	5E-28		0.2177	[0.18-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1464	chr1	115235784	115235785	rs12132598	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p13.2	AMPD1	rs12132598-A	0.667322	2E-8		0.0083233	[0.0054-0.0112] unit decrease	Affymetrix [12370749]	N
1464	chr1	115236056	115236057	rs17602729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p13.2		rs17602729-A	NR	2E-12		0.0203	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1464	chr1	115239815	115239816	rs926938	24189344	Xia K	2013-11-05	Mol Psychiatry	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios		AMPD1, NRAS, CSDE1	rs926938-A	0.50	4E-8		1.27	[NR]	Illumina [702234] (imputed)	N
1464	chr1	115252608	115252609	rs7549358	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p13.2	NRAS	rs7549358-G	0.35571	7E-10		0.00882987	[0.006-0.0116] unit increase	Affymetrix [12370749]	N
1464	chr1	115252608	115252609	rs7549358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.2		rs7549358-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1464	chr1	115290407	115290408	rs12136031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p13.2	NR	rs12136031-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1464	chr1	115330069	115330070	rs79764489	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1p13.2	SIKE1	rs79764489-G	0.667168	1E-8		0.0127391	[0.0084-0.017] unit decrease	NR [16516521] (imputed)	N
1465	chr1	115357014	115357015	rs951307	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	1p13.2	intergenic	rs951307-T	NR	6E-6	(adjusted)	0.0258	[0.0363-0.0144] unit decrease	Illumina [307238]	N
1465	chr1	115369111	115369112	rs6689326	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1p13.2	NR	rs6689326-?	NR	3E-7			[NR]	Illumina [5779266] (imputed)	N
1465	chr1	115390015	115390016	rs12405062	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1p13.2	NR	rs12405062-?	NR	9E-6		0.0076796	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1465	chr1	115422309	115422310	rs360639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p13.2		rs360639-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1466	chr1	115479465	115479466	rs140328416	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	1p13.2	NR	rs140328416-A	0.029617897	8E-6		0.36805844	[0.21-0.53] unit increase	Affymetrix [536506]	N
1466	chr1	115552924	115552925	rs147900370	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	1p13.2	Intergenic	rs147900370-C	0.04	2E-6		0.92	[0.57-1.27] unit decrease	Illumina [~ 31000000] (imputed)	N
1466	chr1	115578153	115578154	rs12744835	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs12744835-T	0.9386	5E-17		0.2871	[0.22-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1467	chr1	115619633	115619634	rs55675132	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1p13.2	NR	rs55675132-C	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1467	chr1	115625080	115625081	rs72697933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p13.2		rs72697933-C	NR	1E-8		0.0265	[0.017-0.036] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1467	chr1	115629563	115629564	rs6537855	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	1p13.2	TSPAN2	rs6537855-A	0.307621	8E-6		0.794	[0.718 - 0.879]	Illumina [5400100] (imputed)	N
1467	chr1	115646154	115646155	rs1419079	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1p13.2		rs1419079-G	0.252	4E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1467	chr1	115655689	115655690	rs12122341	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (large artery atherosclerosis)	up to 2,349 European ancestry cases, up to 220 African ancestry cases, up to 146 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	33 African ancestry cases, 34 East Asian ancestry cases, 1,787 European ancestry cases, 40 Hispanic ancestry cases, 355 South Asian ancestry cases, 239 African ancestry controls, 329 East Asian ancestry controls, 176,782 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	1p13.2	TSPAN2	rs12122341-G	0.257	1E-9	(CCSp)	1.19	[1.12-1.26]	Illumina [up to 15400000] (imputed)	N
1467	chr1	115657798	115657799	rs12124533	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCSp classification)j	2,449 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	1p13.2	TSPAN2	rs12124533-?	NR	6E-9		1.1558485	[1.1-1.21]	Illumina [~ 10156805] (imputed)	N
1467	chr1	115657798	115657799	rs12124533	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCS or TOAST classification)	3,495 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	1p13.2	TSPAN2	rs12124533-?	NR	4E-7		1.1100056	[1.07-1.16]	Illumina [~ 10156805] (imputed)	N
1467	chr1	115657798	115657799	rs12124533	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Large artery stroke (CCS and TOAST classification)	1,328 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	1p13.2	TSPAN2	rs12124533-?	NR	3E-8		1.1761668	[1.11-1.25]	Illumina [~ 10156805] (imputed)	N
1467	chr1	115657798	115657799	rs12124533	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	1p13.2	TSPAN2	rs12124533-?	NR	1E-8				NR [~ 8000000] (imputed)	N
1467	chr1	115657798	115657799	rs12124533	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	1p13.2	TSPAN2	rs12124533-?	NR	7E-8				NR [~ 8000000] (imputed)	N
1467	chr1	115663132	115663133	rs79926686	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	1p13.2	NR	rs79926686-A	0.04003235	2E-6		0.33901066	[0.2-0.48] unit increase	Affymetrix [536506]	N
1467	chr1	115677182	115677183	rs2078371	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	1p13.2	NGF, TSPAN2	rs2078371-C	0.11	7E-9		1.18	[1.12-1.25]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1467	chr1	115677182	115677183	rs2078371	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1p13.2	TSPAN2, NGF	rs2078371-C	0.12	4E-24		1.11	[1.09-1.13]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1467	chr1	115677945	115677946	rs12134493	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1p13.2	Intergenic	rs12134493-A	NR	2E-10		0.0136	[0.0095-0.0177] unit increase	Affymetrix [9304965] (imputed)	N
1467	chr1	115677945	115677946	rs12134493	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	1p13.2	TSPAN2, NGF	rs12134493-?	NR	2E-13		1.0893246	[1.06-1.11]	Illumina [13763073] (imputed)	N
1467	chr1	115677945	115677946	rs12134493	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	1p13.2	TSPAN2	rs12134493-A	0.12	5E-8		1.18	[1.11-1.26]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1467	chr1	115677945	115677946	rs12134493	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	1p13.2	TSPAN2	rs12134493-A	0.12	5E-14		1.14	[1.10-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1467	chr1	115681565	115681565	rs5777216	34111113	Green HD	2021-06-10	PLoS Genet	A genome-wide association study identifies 5 loci associated with frozen shoulder and implicates diabetes as a causal risk factor.	Frozen shoulder	627,998 European ancestry individuals	NA	1p13.2	NR	rs5777216-GT	0.403	3E-10		1.09	[1.11-1.06]	NR [16689279] (imputed)	N
1467	chr1	115712578	115712579	rs17033324	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1p13.2	NR	rs17033324-C	NR	2E-12	(GEE model)	1.2284	[0.89-1.57] unit decrease	NR [NR] (imputed)	N
1467	chr1	115724365	115724366	rs195213	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	1p13.2	Intergenic	rs195213-T	0.264687143	2E-6		0.16814	[0.099-0.238] unit decrease	Illumina [6952813] (imputed)	N
1467	chr1	115734090	115734091	rs195204	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	1p13.2	intergenic	rs195204-T	0.24	9E-6		0.1	[NR] unit increase	Illumina [~ 300000]	N
1468	chr1	115753481	115753482	rs11806316	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1p13.2	intergenic	rs11806316-A	0.3668	4E-10		0.0337	[0.023-0.044] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1468	chr1	115753481	115753482	rs11806316	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1p13.2	intergenic	rs11806316-A	0.3665	5E-10		0.0369	[0.025-0.048] unit decrease	NR [8041861] (imputed)	N
1468	chr1	115755196	115755197	rs12136712	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1p13.2	intergenic	rs12136712-A	0.302	4E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1468	chr1	115817220	115817221	rs12030576	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	1p13.2	NGF, RP4-663N10.1	rs12030576-T	0.59489742	8E-12		0.1975494	[0.14-0.25] unit decrease	Affymetrix [536506]	N
1468	chr1	115817220	115817221	rs12030576	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Dysmenorrheic pain severity	5,734 Japanese ancestry female individuals	5,614 Japanese ancestry female individuals	1p13.2	RP4-663N10.1, NGF	rs12030576-T	0.5949	1E-19		0.4196692	[0.33-0.51] unit decrease	Affymetrix [536506]	N
1468	chr1	115823386	115823387	rs7523086	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	1p13.2	TSPAN2, NGF, RP4-663N10.1	rs7523086-G	0.621	4E-14		0.1	[0.074-0.126] unit increase	Illumina [11942402] (imputed)	N
1468	chr1	115824397	115824398	rs7544256	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	1p13.2	NR	rs7544256-A	NR	1E-7	(random effect)	1.05	NR	NR [6904914] (imputed)	N
1468	chr1	115824397	115824398	rs7544256	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1p13.2	NGF, TSPAN2	rs7544256-?	0.64	9E-9		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1468	chr1	115825530	115825531	rs6657049	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	1p13.2	RP4-663N10.1, NGF	rs6657049-A	0.595484796	2E-13		0.22132388	[0.16-0.28] unit decrease	Affymetrix [536506]	N
1468	chr1	115826168	115826169	rs57748895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	1p13.2		rs57748895-T	NR	8E-10		0.1841	[0.13-0.24] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr1	115826168	115826169	rs57748895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1p13.2		rs57748895-T	NR	9E-9		0.1752	[0.12-0.23] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr1	115826168	115826169	rs57748895	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	1p13.2	RP4-663N10.1	rs57748895-T	0.0175421	9E-9		0.1752096	[0.12-0.23] unit increase	Affymetrix [7288503] (imputed)	N
1468	chr1	115826168	115826169	rs57748895	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1p13.2	RP4-663N10.1	rs57748895-T	0.0175751	4E-10		0.19561039	[0.13-0.26] unit increase	Affymetrix [7288503] (imputed)	N
1468	chr1	115826475	115826476	rs146754848	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1p13.2	RP4-663N10.1	rs146754848-G	0.0177044	5E-17		0.19072177	[0.15-0.24] unit increase	Affymetrix [7288503] (imputed)	N
1468	chr1	115826699	115826700	rs138443500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1p13.2		rs138443500-G	NR	1E-11		0.0611	[0.043-0.079] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1468	chr1	115827265	115827266	rs59980837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1p13.2		rs59980837-T	NR	4E-10		0.1959	[0.13-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr1	115827265	115827266	rs59980837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1p13.2		rs59980837-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1468	chr1	115827783	115827784	rs146718647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1p13.2		rs146718647-T	NR	7E-17		0.1899	[0.15-0.23] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr1	115829177	115829178	rs11466111	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1p13.2	chr1mb115	rs11466111-T	0.017550148	5E-10		0.6488	[0.44-0.85] unit increase	Affymetrix [~ 9800000] (imputed)	N
1468	chr1	115830460	115830461	rs6326	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs6326-C	0.2664	4E-13		0.0946	[0.069-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1468	chr1	115831201	115831202	rs145339349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1p13.2		rs145339349-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1468	chr1	115831782	115831783	rs2268793	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	1p13.2	NR	rs2268793-?	NR	3E-6		0.0199	[0.012-0.028] unit decrease	Illumina [~ 7800000] (imputed)	N
1468	chr1	115836745	115836746	rs11102916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1p13.2		rs11102916-A	NR	1E-11		0.0352	[0.025-0.045] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1468	chr1	115836745	115836746	rs11102916	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p13.2	NGF	rs11102916-C		1E-7		0.734	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1468	chr1	115836745	115836746	rs11102916	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1p13.2	NGF	rs11102916-C		1E-11		0.575	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1468	chr1	115839679	115839680	rs10489530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1p13.2		rs10489530-A	NR	1E-10		0.0349	[0.024-0.045] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1468	chr1	115840516	115840517	rs12058002	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	1p13.2	RP4-663N10.1	rs12058002-G	0.0204073	6E-10		0.17174667	[0.12-0.23] unit increase	Affymetrix [7288503] (imputed)	N
1468	chr1	115848387	115848388	rs12402406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p13.2	NGF, RP4-663N10.1	rs12402406-T	0.083867	2E-10		0.0252389	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1468	chr1	115848449	115848450	rs12760036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p13.2	NR	rs12760036-C	0.084035	1E-10		0.021544	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1468	chr1	115852031	115852032	rs35225488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p13.2		rs35225488-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1468	chr1	115861264	115861265	rs7523654	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1p13.2	NGF	rs7523654-T	NR	4E-7		1.053	[1.03-1.07]	Illumina [6627481] (imputed)	N
1468	chr1	115861264	115861265	rs7523654	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1p13.2	intergenic	rs7523654-T	NR	2E-6		1.049	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1469	chr1	115874511	115874512	rs12061479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.2		rs12061479-A	0.1792	5E-7		0.1093	[0.067-0.152] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1469	chr1	115875644	115875645	rs4332358	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	1p13.2	NR	rs4332358-?	NR	5E-6		1.2615	[NR]	Affymetrix [722112]	N
1469	chr1	115884183	115884184	rs6537862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.2		rs6537862-A	NR	2E-8		0.067	[0.043-0.091] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1469	chr1	115898782	115898783	rs61797063	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1p13.2	NGF, VANGL1	rs61797063-?	NR	9E-11		0.0434409	[0.03-0.057] unit decrease	Illumina [4804024] (imputed)	N
1469	chr1	115907008	115907009	rs11584234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1p13.2		rs11584234-G	NR	1E-8		0.0949	[0.062-0.127] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1469	chr1	115907008	115907009	rs11584234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1p13.2		rs11584234-G	NR	4E-9		0.0605	[0.041-0.08] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1469	chr1	115921354	115921355	rs7552722	23535911	Kitamoto T	2013-03-28	Hum Genet	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Pediatric non-alcoholic fatty liver disease activity score	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	1p13.2	NGF	rs7552722-A	0.32	7E-6		1.27	[1.00-1.61]	Illumina [261540]	N
1469	chr1	115927715	115927716	rs151165466	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p13.2	Intergenic	rs151165466-?		6E-6		2.09	[1.52-2.87]	Illumina [7645193] (imputed)	N
1469	chr1	115958422	115958423	rs145365907	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	1p13.2	NGF	rs145365907-T	0.01	4E-6		5.97	[2.55-14.0]	Affymetrix [426344]	N
1470	chr1	116008186	116008187	rs111343462	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	1p13.2	NR	rs111343462-?	NR	2E-6		0.1151	[0.068-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
1470	chr1	116018344	116018345	rs150215900	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1p13.2		rs150215900-C	NR	6E-8		1.2186		Affymetrix, Illumina [62056310] (imputed)	N
1470	chr1	116085655	116085656	rs2226738	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	1p13.1		rs2226738-C	0.1688	2E-6	(East Asian)	1.1	[1.06-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1470	chr1	116092476	116092477	rs3017144	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.1	NR	rs3017144-T	0.02265	3E-9	(APRT)	0.1661	NR unit decrease	Illumina [1671387] (imputed)	N
1470	chr1	116092476	116092477	rs3017144	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.1	NR	rs3017144-T	0.02265	2E-8	(ATIC)	0.1475	NR unit decrease	Illumina [1671387] (imputed)	N
1470	chr1	116095961	116095962	rs948618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.1	NR	rs948618-C	0.03136	2E-9	(ATIC)	0.129	NR unit decrease	Illumina [1671387] (imputed)	N
1470	chr1	116095961	116095962	rs948618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.1	NR	rs948618-C	0.03136	1E-9	(APRT)	0.1399	NR unit decrease	Illumina [1671387] (imputed)	N
1471	chr1	116173079	116173080	rs7523839	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1p13.1	NR	rs7523839-?	NR	3E-12		0.01887193	[0.014-0.024] unit increase	Illumina [30613845] (imputed)	N
1471	chr1	116209289	116209290	rs4839470	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p13.1	VANGL1	rs4839470-T	0.24	4E-23		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1471	chr1	116209761	116209762	rs12137699	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1p13.1	VANGL1	rs12137699-T	0.24	4E-27		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1471	chr1	116209761	116209762	rs12137699	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	1p13.1	VANGL1	rs12137699-T	NR	5E-8	(k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae)	5.469975	NR Z-score increase	Illumina [8100000] (imputed)	N
1471	chr1	116214278	116214279	rs10801913	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	1p13.1	VANGL1	rs10801913-A	0.307	3E-10		0.024	[0.016-0.031] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1471	chr1	116235276	116235277	rs3204955	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p13.1	VANGL1	rs3204955-T	NR	6E-6		0.0165221	[0.0094-0.0237] unit increase	Illumina [13520550] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	8E-11	(-8 ms)	0.0363519	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	7E-10	(-10 ms)	0.0345171	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	6E-27	(36 ms)	0.0605492	[0.05-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	6E-26	(38 ms)	0.0596171	[0.049-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	6E-25	(40 ms)	0.0584854	[0.047-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	5E-19	(22 ms)	0.0495465	[0.038-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	5E-18	(20 ms)	0.047798	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	5E-16	(46 ms)	0.0457699	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	3E-26	(34 ms)	0.0595853	[0.049-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	3E-20	(24 ms)	0.0515458	[0.04-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	3E-12	(-6 ms)	0.0382176	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	2E-23	(42 ms)	0.0568303	[0.046-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	2E-22	(26 ms)	0.0547982	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	2E-20	(44 ms)	0.0526123	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	2E-12	(48 ms)	0.0398873	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	1E-25	(32 ms)	0.0588899	[0.048-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	1E-25	(30 ms)	0.0591858	[0.048-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	1E-24	(28 ms)	0.0581784	[0.047-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	1E-16	(18 ms)	0.0454228	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p13.1	CASQ2	rs4073778-C	0.44926	1E-15	(16 ms)	0.0440914	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1p13.1	NHLH2	rs4073778-?	NR	8E-7				Affymetrix, Illumina [22000000] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1p13.1	CASQ2	rs4073778-A	0.5529	2E-12		0.1839	[0.13-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1472	chr1	116297757	116297758	rs4073778	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1p13.1	CASQ2	rs4073778-A	0.564	5E-13		1.05	[1.04-1.06]	Illumina [34740186] (imputed)	N
1472	chr1	116300136	116300137	rs9428221	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	1p13.1	CASQ2	rs9428221-G	0.4827	2E-11		0.5219	[0.37-0.67] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1472	chr1	116300136	116300137	rs9428221	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	1p13.1	CASQ2	rs9428221-G	0.4827	3E-6		0.0231	[0.013-0.033] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1472	chr1	116310817	116310818	rs4484922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1p13.1		rs4484922-C	NR	8E-9		0.0581	[0.038-0.078] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1472	chr1	116310817	116310818	rs4484922	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p13.1	CASQ2	rs4484922-G	0.71	3E-15	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1472	chr1	116310817	116310818	rs4484922	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1p13.1	CASQ2	rs4484922-G	0.68	5E-16		1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1472	chr1	116310966	116310967	rs4074536	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial total emptying fraction	35,658 British ancestry individuals	NA	1p13.1		rs4074536-?	NR	5E-11		0.424	[0.3-0.55] unit decrease	Affymetrix [10600000] (imputed)	N
1472	chr1	116310966	116310967	rs4074536	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	1p13.1		rs4074536-?	NR	9E-14		0.528	[0.39-0.67] unit decrease	Affymetrix [10600000] (imputed)	N
1472	chr1	116310966	116310967	rs4074536	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	1p13.1	CASQ2	rs4074536-C	0.294635	2E-18		0.309967	[0.24-0.38] ms decrease	Illumina [162199]	N
1472	chr1	116310966	116310967	rs4074536	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	1p13.1	CASQ2	rs4074536-C	0.290457346718102	2E-11		0.33213338	[0.23-0.43] ms decrease	Illumina [213295]	N
1472	chr1	116310966	116310967	rs4074536	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p13.1	NR	rs4074536-?	NR	7E-7	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1472	chr1	116320832	116320833	rs10923445	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p13.1	CASQ2	rs10923445-T	0.75	3E-8	(European)	0.44	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1472	chr1	116320832	116320833	rs10923445	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1p13.1	CASQ2	rs10923445-T		8E-9		0.39	[0.25-0.53] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1472	chr1	116333110	116333111	rs12039739	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1p13.1	CASQ2	rs12039739-?	NR	7E-9	(EA)	0.39	[0.25-0.53] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1472	chr1	116341901	116341902	rs9428238	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate variability traits (SDNN)	13,184 Hispanic/Latino individuals	7,073 European ancestry individuals, 2,908 African American individuals	1p13.1	NHLH2	rs9428238-C	0.57	6E-7	(Hispanic)	0.039	[0.023-0.055] unit increase	Affymetrix, Illumina [17209740] (imputed)	N
1472	chr1	116351383	116351384	rs12759898	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	1p13.1	NR	rs12759898-A	0.0818	4E-8	(dominant)	1.6052829	[1.35653818178434-1.8996392505242]	Affymetrix, Illumina [6131010] (imputed)	N
1473	chr1	116427566	116427567	rs11590526	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1p13.1	intergenic	rs11590526-T	0.077	9E-6		0.039	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1473	chr1	116452799	116452800	rs2334921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p13.1		rs2334921-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1473	chr1	116461017	116461018	rs79749176	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	1p13.1	Intergenic	rs79749176-T	0.9468	9E-6		39.0894	[22.49-55.69] unit increase	Illumina [~ 6000000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	9E-6	(TAG 48:3)	0.28299978	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	7E-6	(TAG 46:1)	0.28419644	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	5E-6	(TAG 48:2)	0.29044902	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	3E-6	(TAG 52:1)	0.2982194	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	3E-6	(TAG 50:3)	0.29333335	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr1	116518318	116518319	rs1281693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p13.1	NHLH2	rs1281693-?	NR	3E-6	(TAG 50:2)	0.29563573	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr1	116579976	116579977	rs80274284	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	1p13.1	SLC22A15	rs80274284-?	NR	1E-6	(East and South Asian)			NR [at least 880000]	N
1475	chr1	116658816	116658817	rs1146361	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	1p13.1	NR	rs1146361-C	0.15	8E-7		0.81	unit decrease	Illumina [8591557] (imputed)	N
1475	chr1	116683539	116683540	rs6689906	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	1p13.1	Intergenic	rs6689906-C	0.9364	7E-6		35.6552	[20.7-50.61] unit increase	Illumina [~ 6000000] (imputed)	N
1475	chr1	116717050	116717051	rs12029229	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1p13.1	MAB21L3, ATP1A1	rs12029229-?	NR	2E-8		0.3907	[0.26-0.53] unit increase	Affymetrix [11100000] (imputed)	N
1475	chr1	116740449	116740450	rs4839516	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1p13.1	intergenic	rs4839516-A	0.31	4E-7		0.079	[0.05-0.108] unit increase	Illumina [~ 2400000] (imputed)	N
1475	chr1	116747476	116747477	rs10802170	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1p13.1	NR	rs10802170-?	NR	6E-10				Affymetrix, Illumina [6210527] (imputed)	N
1475	chr1	116761693	116761694	rs74346392	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p13.1	intergenic	rs74346392-G	0.005	7E-6		7.7	[2.7-21.93]	Illumina [1556551]	N
1476	chr1	116800200	116800201	rs4839524	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	1p13.1	NR	rs4839524-G	0.9271	5E-6		0.1146	[0.065-0.164] unit increase	Illumina [up to 1980188] (imputed)	N
1476	chr1	116816698	116816699	rs9428344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1p13.1		rs9428344-T	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1476	chr1	116817348	116817349	rs9428345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1p13.1	NR	rs9428345-A	NR	5E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
1476	chr1	116824520	116824521	rs182079223	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1p13.1	NR	rs182079223-A	0.963	6E-6		0.4059	[0.23-0.58] unit increase	Illumina [NR] (imputed)	N
1476	chr1	116830249	116830250	rs10737767	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1p13.1	NR	rs10737767-C	0.4161	7E-10		0.001402	[0.00095-0.00185] unit increase	Affymetrix [NR] (imputed)	N
1476	chr1	116877586	116877587	rs72693785	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Waist circumference adjusted for body mass index	5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American males, 758 African American males, 4,281 European ancestry males	1p13.1		rs72693785-T	0.006	1E-7		3.551	[2.24-4.87] unit decrease	Illumina [NR] (imputed)	N
1476	chr1	116887741	116887742	rs6674304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p13.1	NR	rs6674304-C	0.0910306	3E-42				Affymetrix, Illumina [23114412] (imputed)	N
1476	chr1	116887741	116887742	rs6674304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.1	NR	rs6674304-T	0.23582	3E-44		0.261154	[0.22-0.3] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1476	chr1	116891362	116891363	rs12094032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.1		rs12094032-A	0.7855	3E-41		0.2569	[0.22-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1476	chr1	116891362	116891363	rs12094032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1p13.1		rs12094032-A	0.786	1E-8		0.1072	[0.07-0.144] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1476	chr1	116891362	116891363	rs12094032	29367735	Nakagawa-Senda H	2018-01-24	Sci Rep	A genome-wide association study in the Japanese population identifies the 12q24 locus for habitual coffee consumption: The J-MICC Study.	Coffee consumption	11,261 Japanese ancestry individuals	NA	1p13.1	MAB21L3, ATP1A1	rs12094032-G	0.057	8E-7	(adjusted for smoking status)	0.2139	[0.13-0.3] cups per day increase	Illumina [7094228] (imputed)	N
1476	chr1	116891492	116891493	rs182462345	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1p13.1		rs182462345-A	0.0117	7E-9		0.3693	[0.24-0.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1476	chr1	116891492	116891493	rs182462345	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p13.1		rs182462345-A	0.0121	2E-9		0.3245	[0.22-0.43] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1477	chr1	116917484	116917485	rs61788009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p13.1	ATP1A1, AL136376.1	rs61788009-A	NR	1E-8		0.0323958	[0.021-0.043] unit decrease	Affymetrix [321788] (imputed)	N
1477	chr1	116948711	116948712	rs850610	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1p13.1	NR	rs850610-?	NR	8E-9		0.01601773	[0.011-0.021] unit increase	Illumina [30613845] (imputed)	N
1477	chr1	116950765	116950766	rs12087680	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p13.1		rs12087680-A	0.2332	6E-81		0.2429	[0.22-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1477	chr1	116950765	116950766	rs12087680	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p13.1	NR	rs12087680-G	0.261808	4E-37		0.209987	[0.18-0.24] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1477	chr1	116977814	116977815	rs72693796	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	1p13.1		rs72693796-?	NR	5E-6		0.9002026	[0.51-1.29] unit increase	Illumina [9875426] (imputed)	N
1477	chr1	117006869	117006870	rs113887891	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	1p13.1	intergenic	rs113887891-?	NR	3E-7		6.95	[3.30-14.64]	Illumina [9380034] (imputed)	N
1477	chr1	117006869	117006870	rs113887891	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	1p13.1	LINC01762	rs113887891-?	NR	5E-8	(conditioned on rs9266634 and rs111876221)	9.52	[4.24-21.37]	Illumina [9380034] (imputed)	N
1477	chr1	117012398	117012399	rs12089393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1p13.1	NR	rs12089393-G	NR	6E-10		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1477	chr1	117015117	117015118	rs12078697	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p13.1	RP4-655J12.4	rs12078697-C	0.2103	5E-9		0.1083	[0.072-0.145] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1477	chr1	117016645	117016646	rs6661803	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	1p13.1	NR	rs6661803-A	0.01617	8E-6		0.263019	NR unit decrease	Illumina [560351]	N
1477	chr1	117018545	117018546	rs17035776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1p13.1		rs17035776-C	NR	1E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1477	chr1	117032021	117032022	rs17035850	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p13.1		rs17035850-A	0.6777	2E-29		0.1978	[0.16-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1477	chr1	117032021	117032022	rs17035850	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p13.1		rs17035850-A	0.1429	3E-7		0.0723	[0.045-0.1] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1477	chr1	117038286	117038287	rs12025416	21244703	Wang JH	2011-01-18	Genome Med	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	1p13.1	CD58	rs12025416-?	NR	1E-7		1.45	[1.25-1.69]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1477	chr1	117043301	117043302	rs9651076	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1p13.1	CD58	rs9651076-A	0.431	3E-13		1.117	[1.09-1.15]	Illumina [11270530] (imputed)	N
1478	chr1	117061383	117061384	rs10802190	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1p13.1		rs10802190-A	NR	3E-11		0.254461	[0.18-0.33] unit increase	NR [5275424] (imputed)	N
1478	chr1	117065082	117065083	rs10802191	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1p13.1		rs10802191-T	NR	4E-17		0.230466	[0.18-0.28] unit increase	NR [2787054] (imputed)	N
1478	chr1	117065082	117065083	rs10802191	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1p13.1		rs10802191-A	NR	3E-8		0.208037	[0.13-0.28] unit decrease	NR [5054572] (imputed)	N
1478	chr1	117076546	117076547	rs1016140	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1p13.1	CD58	rs1016140-T	NR	1E-8		0.89	[0.85-0.93]	Illumina [NR] (imputed)	N
1478	chr1	117076546	117076547	rs1016140	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1p13.1	CD58	rs1016140-T	NR	3E-10		0.87	[0.83-0.91]	Illumina [5719137] (imputed)	N
1478	chr1	117080165	117080166	rs6677309	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p13.1	CD58	rs6677309-A	0.88	5E-42		1.29		Illumina [161311]	N
1478	chr1	117090492	117090493	rs10801908	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p13.1	CD58	rs10801908-C	NR	5E-70		1.2987	NR	Affymetrix, Illumina [8278136] (imputed)	N
1478	chr1	117100956	117100957	rs1335532	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1p13.1	CD58	rs1335532-A	NR	3E-16		1.22	[1.19-1.24]	Illumina [465434]	N
1478	chr1	117100956	117100957	rs1335532	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	1p13.1	CD58	rs1335532-A	0.87	1E-7		1.28	[NR]	Illumina [302098]	N
1478	chr1	117104214	117104215	rs2300747	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	1p13.1	CD58	rs2300747-A	0.416	2E-12		1.29	[1.20-1.39]	Illumina [776516]	N
1478	chr1	117104214	117104215	rs2300747	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	1p13.1	CD58	rs2300747-?		2E-12		1.3333333		Illumina [at least 8143088] (imputed)	N
1478	chr1	117104214	117104215	rs2300747	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	1p13.1	CD58	rs2300747-A	0.91	6E-9		1.37	[NR]	Affymetrix, Illumina [2529394]	N
1478	chr1	117104214	117104215	rs2300747	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	1p13.1	CD58	rs2300747-A	0.88	3E-10		1.3	[1.14-1.47]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1478	chr1	117129710	117129711	rs17036023	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	1p13.1	IGSF3	rs17036023-?	NR	5E-6				Affymetrix [786195]	N
1479	chr1	117200749	117200750	rs699785	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1p13.1	IGSF3	rs699785-G	NR	2E-8		0.00823749	[0.0053-0.0111] unit decrease	Affymetrix [10061374] (imputed)	N
1479	chr1	117236969	117236970	rs614477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.1	IGSF3	rs614477-G	0.398125	2E-6	(IGSF3, 9715_15_3)	0.11699043	[0.069-0.165] unit increase	Illumina [> 1000000] (imputed)	N
1479	chr1	117263789	117263790	rs624988	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p13.1	CD2	rs624988-T	NR	9E-7		0.0338572	[-0.05524-0.12295] unit increase	Illumina [8380626] (imputed)	N
1479	chr1	117263789	117263790	rs624988	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1p13.1	CD2	rs624988-T	0.4	5E-8	(EA)	0.08585	[0.055-0.117] unit increase	Illumina [8380626] (imputed)	N
1479	chr1	117263789	117263790	rs624988	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1p13.1	CD2	rs624988-T	0.4	8E-10	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1479	chr1	117280695	117280696	rs798000	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1p13.1	CD2	rs798000-G	0.23	6E-6		1.1081		Illumina [129464] (imputed)	N
1479	chr1	117280695	117280696	rs112300936	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1p13.1	CD2	rs112300936-G	0.32	9E-8		1.11	[1.07-1.16]	Illumina [133816] (imputed)	N
1479	chr1	117285150	117285151	rs78827946	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1p13.1	NR	rs78827946-?	NR	4E-8		5.476	NR z score increase	Illumina [at least 830937] (imputed)	N
1479	chr1	117298230	117298231	rs151029932	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1p13.1	CD2	rs151029932-T	0.9921	7E-6		0.4438	[0.25-0.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1480	chr1	117310295	117310296	rs810048	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1p13.1	CD2	rs810048-T	0.0796453	4E-8		0.091661274	[0.059-0.124] unit decrease	Affymetrix [7288503] (imputed)	N
1480	chr1	117310295	117310296	rs810048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1p13.1		rs810048-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1480	chr1	117325562	117325562	rs34559161	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1p13.1	NR	rs34559161-?	NR	5E-6		4.42	[3.39-5.76]	Illumina [539000] (imputed)	N
1480	chr1	117343442	117343443	rs11810158	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p13.1	CD2	rs11810158-T	NR	5E-6		1.0800303	NR	Affymetrix, Illumina [8278136] (imputed)	N
1480	chr1	117383165	117383166	rs146978188	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	1p13.1	CD2, PTGFRN	rs146978188-A	0.015	5E-8		6.31	[3.26-12.24]	Illumina [7206774] (imputed)	N
1480	chr1	117400690	117400691	rs75740589	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p13.1	NR	rs75740589-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1480	chr1	117411382	117411383	rs1013910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p13.1		rs1013910-A	0.881151	3E-9		0.020464428	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1480	chr1	117411382	117411383	rs1013910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1p13.1		rs1013910-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1481	chr1	117445364	117445365	rs2251406	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1p13.1		rs2251406-T	0.6604	1E-7		0.0867	[0.055-0.119] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1481	chr1	117465330	117465331	rs34171147	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	1p13.1	PTGFRN	rs34171147-A		2E-8		0.365	[0.24-0.49] unit decrease	Illumina [7328171] (imputed)	N
1481	chr1	117468751	117468752	rs12032984	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	1p13.1		rs12032984-?	NR	1E-5		0.27	[0.15-0.39] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1481	chr1	117469780	117469781	rs2806864	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	1p13.1	PTGFRN	rs2806864-?	0.15	6E-7		6.42	[NR]	Affymetrix [512497]	N
1481	chr1	117487710	117487711	rs4546904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.1	NR	rs4546904-A	0.913	4E-240	(Prostaglandin F2 receptor negative regulator, PTGFRN.12727.7.3)	1.26	[1.18-1.34] unit increase	Affymetrix [10572788] (imputed)	N
1481	chr1	117490260	117490261	rs4233450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGFRN	5,360 Icelandic ancestry individuals	NA	1p13.1		rs4233450-G	0.1764	4E-83		0.46658	[0.42-0.51] unit decrease	Illumina [7506463] (imputed)	N
1481	chr1	117490260	117490261	rs4233450	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p13.1	PTGFRN	rs4233450-T	0.82203125	2E-50	(PTGFRN, 12727_7_3)	0.47843692	[0.42-0.54] unit increase	Illumina [> 1000000] (imputed)	N
1481	chr1	117490260	117490261	rs4233450	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.1	PTGFRN	rs4233450-T	0.829	2E-273	(Prostaglandin F2 receptor negative regulator, PTGFRN.12727.7.3)	1.0	[0.94-1.06] unit increase	Affymetrix [10572788] (imputed)	N
1481	chr1	117500763	117500764	rs72699122	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	1p13.1	PTGFRN	rs72699122-A	0.1996	1E-6		4.009	[2.32-6.93]	Affymetrix [7675561] (imputed)	N
1481	chr1	117511803	117511804	rs77786465	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p13.1	NR	rs77786465-C	0.115	1E-43	(Prostaglandin F2 receptor negative regulator, PTGFRN.12727.7.3)	0.53	[0.45-0.61] unit decrease	Affymetrix [10572788] (imputed)	N
1481	chr1	117515283	117515284	rs12026724	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTGFRN	5,360 Icelandic ancestry individuals	NA	1p13.1		rs12026724-A	0.03006	1E-12		0.380916	[0.28-0.49] unit decrease	Illumina [7506463] (imputed)	N
1481	chr1	117530506	117530507	rs1127655	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1p13.1	PTGFRN	rs1127655-C	0.470936253793588	2E-8		0.0438	[0.028-0.059] unit increase	NR [5035015] (imputed)	N
1481	chr1	117532789	117532790	rs1127215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p13.1		rs1127215-T	NR	3E-10		0.042	[0.029-0.055] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1481	chr1	117532789	117532790	rs1127215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1p13.1		rs1127215-T	NR	4E-8		0.0441	[0.028-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1481	chr1	117532789	117532790	rs1127215	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p13.1	NR	rs1127215-C	0.5853	2E-20		0.043	[0.034-0.052] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1481	chr1	117532789	117532790	rs1127215	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p13.1	NR	rs1127215-C	0.6041	2E-26		0.0412	[0.034-0.049] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1481	chr1	117532789	117532790	rs1127215	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p13.1	PTGFRN	rs1127215-C	0.5838	2E-13		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1481	chr1	117544330	117544331	rs12130298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1p13.1		rs12130298-C	NR	7E-10		0.0276	[0.019-0.036] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1481	chr1	117544330	117544331	rs12130298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1p13.1		rs12130298-C	NR	2E-12		0.0314	[0.023-0.04] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1481	chr1	117544330	117544331	rs12130298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1p13.1	CD101	rs12130298-C	0.076212	5E-13		0.030020993	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1481	chr1	117544330	117544331	rs12130298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1p13.1	NR	rs12130298-C	0.075222	1E-11		0.024793	[0.018-0.032] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1481	chr1	117544330	117544331	rs12130298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1p13.1		rs12130298-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1482	chr1	117644057	117644058	rs41276572	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p13.1	NR	rs41276572-G	0.02787	7E-11	(AGT)	0.05121	NR unit increase	Illumina [1671387] (imputed)	N
1483	chr1	117751364	117751365	rs12046117	19116933	Hinks A	2009-01-01	Arthritis Rheum	Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis.	Arthritis (juvenile idiopathic)	279 European ancestry cases, 184 European ancestry controls	up to 654 European ancestry cases, 2,024 European ancestry controls	1p12	VTCN1	rs12046117-?	0.09	1E-6		1.58	[1.29-1.94]	Affymetrix [88862]	N
1483	chr1	117761078	117761079	rs150979961	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	1p12	VTCN1	rs150979961-T	NR	4E-6		8.98186	[5.31-12.66] unit increase	Illumina [NR] (imputed)	N
1483	chr1	117816990	117816991	rs34644694	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1p12	NR	rs34644694-C	NR	3E-9		0.01577	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1484	chr1	117848821	117848822	rs907662	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	1p12	Intergenic	rs907662-?	NR	4E-8		0.027	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1484	chr1	117853912	117853913	rs1289861	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p12	Intergenic	rs1289861-A	0.2203	2E-9	(MTAG)	0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1484	chr1	117854688	117854689	rs1289863	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p12	MAN1A2	rs1289863-C	0.6915625	1E-15	(MAN1A2, 9077_10_3)	0.20981443	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1484	chr1	117856105	117856106	rs114050097	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1p12	Intergenic	rs114050097-G	NR	9E-6		0.0712878	[0.04-0.103] unit increase	Illumina [13519193] (imputed)	N
1484	chr1	117856105	117856106	rs114050097	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1p12	Intergenic	rs114050097-G	NR	9E-6		0.0652426	[0.036-0.094] unit increase	Illumina [13520550] (imputed)	N
1484	chr1	117865941	117865942	rs148857492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p12	NR	rs148857492-T	0.02091	1E-8	(PRPS1)	0.02678	NR unit increase	Illumina [1671387] (imputed)	N
1484	chr1	117874943	117874944	rs2458370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1p12		rs2458370-T	0.6409	4E-9		0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1484	chr1	117877077	117877079	rs60722532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1p12		rs60722532-G	NR	3E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1484	chr1	117878069	117878070	rs111711406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1A2	5,362 Icelandic ancestry individuals	NA	1p12		rs111711406-C	0.1124	4E-24		0.29378	[0.24-0.35] unit decrease	Illumina [7506463] (imputed)	N
1484	chr1	117944434	117944435	rs1289939	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1p12	NR	rs1289939-C	0.7675	6E-9		1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1484	chr1	117958286	117958287	rs59397164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1p12	NR	rs59397164-A	NR	2E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
1485	chr1	117969780	117969781	rs35505705	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p12	MAN1A2	rs35505705-A	0.238	1E-20	(Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB, MAN1A2.9077.10.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1485	chr1	118013321	118013322	rs3820500	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1p12	NR	rs3820500-A	0.67	2E-10		0.00725812	[0.005-0.0095] unit increase	NR [9732723] (imputed)	N
1485	chr1	118013321	118013322	rs3820500	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	1p12	NR	rs3820500-?	NR	3E-6		0.044	[0.026-0.062] unit decrease	Illumina [at least 560000] (imputed)	N
1485	chr1	118026537	118026538	rs34368125	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs34368125-A	0.9456	2E-22		0.2368	[0.19-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1485	chr1	118065540	118065541	rs41296190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1A2	5,362 Icelandic ancestry individuals	NA	1p12		rs41296190-A	0.02192	1E-11		0.426187	[0.3-0.55] unit decrease	Illumina [7506463] (imputed)	N
1485	chr1	118083587	118083588	rs2767322	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1p12	Intergenic	rs2767322-A	0.1794	5E-11	(MTAG)	0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1485	chr1	118083587	118083588	rs2767322	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1p12	Intergenic	rs2767322-G	0.8206	2E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1485	chr1	118083587	118083588	rs2767322	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1p12	Intergenic	rs2767322-A	0.1727	4E-12	(MTAG)	0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1486	chr1	118123284	118123285	rs4659332	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs4659332-T	0.926	4E-18		0.2873	[0.22-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr1	118125543	118125544	rs1751355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1p12		rs1751355-A	0.0357	2E-7		0.1658	[0.1-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr1	118125543	118125544	rs1751355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p12		rs1751355-A	0.0338	1E-7		0.1487	[0.094-0.204] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1486	chr1	118139539	118139540	rs17613339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1p12	AL157902.3	rs17613339-T	0.127854	5E-10		0.02075203	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118139539	118139540	rs17613339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1p12	AL157902.3	rs17613339-T	0.1287	3E-10		0.03378121	[0.023-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118140341	118140342	rs12409929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1p12	AL157902.3	rs12409929-A	0.1623	3E-10		0.03059117	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118142539	118142540	rs10489820	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs10489820-T	0.8644	2E-6		0.1253	[0.074-0.177] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1486	chr1	118143443	118143444	rs11587409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1p12	AL157902.3	rs11587409-C	0.162784	8E-11		0.019583391	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118143516	118143517	rs320369	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1p12	FAM46C	rs320369-A	0.316706	1E-8		0.0122743	[0.0081-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1486	chr1	118147891	118147892	rs34754277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p12	AL157902.3	rs34754277-C	0.168563	6E-69		0.0593279	[0.053-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118147891	118147892	rs34754277	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1p12	AL157902.3	rs34754277-C	0.1676	6E-15		0.03711069	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118148383	118148384	rs41276588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1p12		rs41276588-A	NR	3E-20		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1486	chr1	118148383	118148384	rs41276588	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p12	NR	rs41276588-G	0.717	4E-13		0.0375	[0.027-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1486	chr1	118148383	118148384	rs41276588	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1p12	FAM46C	rs41276588-A	0.286737	2E-8		0.019227	[0.013-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1486	chr1	118150701	118150701	rs35986908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1p12	FAM46C	rs35986908-TA	0.2153	4E-15		0.03491363	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118152240	118152241	rs10923354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs10923354-T	0.773455	1E-77				Affymetrix, Illumina [17210439] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p12	FAM46C	rs11587735-C	0.168307	4E-132		0.08413074	[0.077-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p12	FAM46C	rs11587735-C	0.168314	5E-101		0.07385862	[0.067-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p12	FAM46C	rs11587735-C	0.16831	5E-141		0.086738676	[0.08-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p12	FAM46C	rs11587735-C	0.168318	9E-118		0.07965932	[0.073-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs11587735-C	0.162426	2E-28				Affymetrix, Illumina [23467995] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1p12	FAM46C	rs11587735-C	0.1682	2E-34		0.05851017	[0.049-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1p12	FAM46C	rs11587735-C	0.1682	2E-29		0.05390528	[0.045-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1p12	FAM46C	rs11587735-C	0.1682	2E-32		0.05676152	[0.047-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118153010	118153011	rs11587735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1p12	FAM46C	rs11587735-C	0.1682	6E-30		0.05440789	[0.045-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118153976	118153977	rs826415	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1p12		rs826415-G	NR	2E-9		0.25	[0.17-0.33] unit increase	Illumina [97506867]	N
1486	chr1	118153976	118153977	rs826415	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1p12		rs826415-G	NR	1E-9		0.1	[0.061-0.139] unit increase	Illumina [94681438]	N
1486	chr1	118153976	118153977	rs826415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p12	FAM46C	rs826415-G	0.316904	7E-20		0.0172785	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118153976	118153977	rs826415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p12	NR	rs826415-G	0.315353	9E-59		0.031567	[0.028-0.035] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1486	chr1	118153976	118153977	rs826415	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p12	FAM46C	rs826415-G	0.3176	3E-20		0.03512793	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118153976	118153977	rs826415	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p12	FAM46C	rs826415-G	0.3177	9E-24		0.03847621	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118154574	118154575	rs67224956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p12		rs67224956-C	NR	2E-14		0.0178	[0.013-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1486	chr1	118154574	118154575	rs67224956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1p12	NR	rs67224956-C	NR	6E-11		0.0217	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1486	chr1	118154574	118154575	rs67224956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1p12	NR	rs67224956-C	0.170315	2E-27		0.026909	[0.022-0.032] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1486	chr1	118154574	118154575	rs67224956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1p12	NR	rs67224956-?	NR	4E-8		0.03388	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1486	chr1	118154774	118154775	rs35602316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p12	FAM46C	rs35602316-A	0.169024	1E-73		0.0339814	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118154830	118154831	rs3767809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs3767809-C	0.224031	3E-65				Affymetrix, Illumina [24588908] (imputed)	N
1486	chr1	118154830	118154831	rs3767809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1p12	NR	rs3767809-C	0.225919	1E-60		0.035794	[0.032-0.04] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1486	chr1	118154830	118154831	rs3767809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1p12	NR	rs3767809-T	0.776033	8E-76		0.042019	[0.038-0.046] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1486	chr1	118154830	118154831	rs3767809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p12		rs3767809-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1486	chr1	118154937	118154938	rs3767810	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs3767810-G	0.223196	3E-18				Affymetrix, Illumina [24332387] (imputed)	N
1486	chr1	118154937	118154938	rs3767810	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p12	NR	rs3767810-G	0.225089	2E-20		0.020647	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1486	chr1	118155102	118155103	rs34039852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p12	FAM46C	rs34039852-C	0.1689	7E-9		0.02739809	[0.018-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118155145	118155149	rs143811622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1p12		rs143811622-A	NR	1E-48		0.0339	[0.029-0.038] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1486	chr1	118155145	118155149	rs143811622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1p12	FAM46C	rs143811622-A	0.221902	8E-57		0.04259095	[0.037-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118155145	118155149	rs143811622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1p12	FAM46C	rs143811622-A	0.2216	6E-16		0.03500024	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118155151	118155152	rs199858224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1p12	FAM46C	rs199858224-G	0.22318	5E-11		0.017731056	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118155151	118155152	rs199858224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1p12	FAM46C	rs199858224-G	0.223198	5E-40		0.035648536	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118155619	118155620	rs3767812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1p12		rs3767812-G	0.778	1E-28				Affymetrix [10369434] (imputed)	N
1486	chr1	118155619	118155620	rs3767812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1p12	FAM46C	rs3767812-A	0.223589	1E-35		0.033275098	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118155826	118155826	rs141620750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12	FAM46C	rs141620750-TTG	0.169122	6E-85		0.0664497	[0.06-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118156052	118156053	rs1370297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1p12	FAM46C	rs1370297-A	0.168295	1E-20		0.027381165	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118160005	118160005	rs10633030	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs10633030-CT	NR	2E-9		1.0528		Affymetrix [9869154] (imputed)	N
1486	chr1	118160005	118160005	rs10633030	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		FAM46C	rs10633030-CT	NR	3E-11		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1486	chr1	118160005	118160005	rs10633030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA		FAM46C	rs10633030-CT	0.206874	8E-29		0.033308085	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118161019	118161020	rs11464707	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p12	FAM46C	rs11464707-G	0.1638	4E-9		0.02796158	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118161094	118161096	rs71584509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1p12	FAM46C	rs71584509-G	0.163477	3E-21		0.028309578	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118162418	118162419	rs11580646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1p12	FAM46C	rs11580646-G	0.1634	2E-10		0.03080177	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	1p12		rs148397151-?	NR	3E-12		0.291221	[0.21-0.37] unit increase	NR [9800000] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	1p12		rs148397151-?	NR	4E-19		0.348849	[0.27-0.43] unit decrease	NR [9800000] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	1p12		rs148397151-?	NR	3E-26		0.426721	[0.35-0.51] unit decrease	NR [9800000] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p12	FAM46C	rs148397151-A	5.31999999999977E-4	9E-11		0.34167838	[0.24-0.44] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p12	FAM46C	rs148397151-A	5.30999999999948E-4	9E-12		0.368664	[0.27-0.46] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118165602	118165603	rs148397151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12	FAM46C	rs148397151-A	5.3000000000003E-4	4E-16		0.42564112	[0.32-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118166095	118166096	rs2884587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1p12		rs2884587-T	NR	2E-16		0.0232	[0.018-0.029] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1486	chr1	118166330	118166331	rs77871185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p12	FAM46C	rs77871185-G	0.00434599999999996	3E-10		0.107555	[0.077-0.138] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118166330	118166331	rs77871185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12	FAM46C	rs77871185-G	0.00434400000000001	3E-14		0.12742317	[0.095-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr1	118166330	118166331	rs77871185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p12		rs77871185-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1486	chr1	118166749	118166750	rs2066411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1p12		rs2066411-G	0.204193	8E-9		0.0235981	[0.016-0.032] unit increase	Illumina [13478928] (imputed)	N
1486	chr1	118168233	118168234	rs11580608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p12	FAM46C	rs11580608-T	0.315205	8E-24		0.0267283	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118168233	118168234	rs11580608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12	FAM46C	rs11580608-T	0.315214	2E-31		0.028947156	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118168825	118168826	rs11581122	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1p12	NR	rs11581122-?	NR	4E-8		0.0342	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1486	chr1	118169462	118169463	rs2282456	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p12	NR	rs2282456-G	0.7154	7E-17		0.0351	[0.027-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1486	chr1	118171000	118171004	rs34914954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p12	FAM46C	rs34914954-C	0.31766	1E-39		0.032956406	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118171452	118171453	rs61807822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p12		rs61807822-C	NR	2E-24		0.0229	[0.019-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1486	chr1	118171800	118171801	rs66464442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	1p12		rs66464442-C	0.684141	5E-8		0.024052	[0.015-0.033] unit decrease	NR [11722792] (imputed)	N
1486	chr1	118171800	118171801	rs66464442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p12	FAM46C	rs66464442-A	0.316666	1E-33		0.030109378	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118172537	118172538	rs6696923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p12	FAM46C	rs6696923-G	0.372866	3E-36		0.030661026	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118172537	118172538	rs6696923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p12	FAM46C	rs6696923-G	0.372844	1E-32		0.02897889	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr1	118178653	118178654	rs11802277	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	1p12		rs11802277-T	0.36975744	6E-6		0.012147039	[0.0069-0.0174] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1486	chr1	118187198	118187199	rs12033311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p12		rs12033311-?	NR	4E-37				NR [~ 8900000] (imputed)	N
1486	chr1	118194143	118194144	rs10923370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1p12	NR	rs10923370-C	NR	4E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1486	chr1	118214114	118214115	rs150019393	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1p12	FAM46C	rs150019393-T	0.0106254432128754	5E-7	(G_Ruminococcus_HB)	1.67721	[1.02-2.33] unit decrease	Illumina [7711310] (imputed)	N
1487	chr1	118230220	118230221	rs7529522	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p12		rs7529522-T	NR	5E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1487	chr1	118230220	118230221	rs7529522	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	intergenic	rs7529522-C	0.23	2E-10	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1487	chr1	118242020	118242021	rs140913792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p12	Intergenic	rs140913792-G	0.996	4E-6	(AA)	0.894	NR unit increase	Illumina [NR] (imputed)	N
1487	chr1	118242863	118242864	rs1891556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs1891556-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1p12		rs10923397-T	NR	3E-16		0.0213	[0.016-0.026] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1p12		rs10923397-T	NR	2E-65		0.0445	[0.039-0.05] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p12		rs10923397-C	0.837	1E-26		0.16	[-0.19--0.13] % decrease	Affymetrix [NR] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1p12	NR	rs10923397-T	0.162426	7E-140		0.08694909	[0.08-0.094] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1p12	NR	rs10923397-T	0.162418	3E-115		0.079024	[0.072-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p12		rs10923397-T	0.162351	1E-22		0.03156827	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1p12		rs10923397-T	0.162358	3E-111		0.0409254	[0.035-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1p12		rs10923397-T	0.162338	7E-24		0.0261937	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12		rs10923397-T	0.162347	9E-142		0.08682364	[0.08-0.094] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1p12		rs10923397-T	0.162425	6E-41		0.04616975	[0.039-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1p12		rs10923397-T	0.162418	1E-137		0.08604811	[0.079-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1p12		rs10923397-T	0.16242	3E-121		0.08085753	[0.074-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs10923397-T	0.170792	7E-73				Affymetrix, Illumina [24246363] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs10923397-T	0.170179	1E-90				Affymetrix, Illumina [20825802] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p12	NR	rs10923397-T	0.162911	1E-72		0.04707	[0.042-0.052] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p12		rs10923397-?	NR	8E-62				NR [~ 8900000] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1p12	intergenic	rs10923397-T	0.1635	1E-15		0.03846353	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1487	chr1	118251142	118251143	rs10923397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1p12	intergenic	rs10923397-T	0.1634	4E-22		0.0465441	[0.037-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1p12		rs10923398-C	NR	2E-50		0.0359	[0.031-0.041] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p12		rs10923398-C	NR	1E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1p12		rs10923398-C	0.184163	3E-30		0.032720838	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs10923398-A	0.815495	7E-41				Affymetrix, Illumina [22063850] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1p12	NR	rs10923398-A	0.814247	1E-42		0.033176	[0.028-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1p12	NR	rs10923398-A	0.689352	5E-28		0.049092	[0.04-0.058] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs10923398-C	0.207265	1E-21				Affymetrix, Illumina [21126107] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1p12	NR	rs10923398-C	0.184319	8E-20		0.023587	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1p12		rs10923398-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1p12	NR	rs10923398-C	NR	2E-11		0.0333861	[0.023-0.043] unit decrease	Affymetrix [16832071] (imputed)	N
1487	chr1	118251174	118251175	rs10923398	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1p12	intergenic	rs10923398-C	0.1839	2E-12		0.03243782	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1487	chr1	118252256	118252257	rs10494201	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p12	GDAP2	rs10494201-?	NR	2E-6	(taurine)	0.17869082	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1487	chr1	118258702	118258703	rs1578741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1p12		rs1578741-C	0.321529	8E-34		0.0470268	[0.039-0.055] unit increase	Illumina [13476299] (imputed)	N
1487	chr1	118258702	118258703	rs1578741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	1p12	NR	rs1578741-A	0.677023	1E-28		0.048927	[0.04-0.058] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1487	chr1	118258702	118258703	rs1578741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1p12	FAM46C, GDAP2	rs1578741-?	NR	2E-21		0.04304	[0.034-0.052] unit increase novel	Illumina [6108953] (imputed)	N
1487	chr1	118258702	118258703	rs1578741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1p12	FAM46C, GDAP2	rs1578741-?	NR	1E-23		0.04541	[0.037-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1487	chr1	118270979	118270980	rs11589523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	1p12		rs11589523-T	0.256055	3E-10		0.0264807	[0.018-0.035] unit increase	Illumina [13477028] (imputed)	N
1487	chr1	118272858	118272858	rs143851549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1p12		rs143851549-GGT	0.321718	2E-31		0.0451968	[0.038-0.053] unit increase	Illumina [13476266] (imputed)	N
1487	chr1	118274718	118274719	rs151046267	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p12	Intergenic	rs151046267-T	0.996	4E-6	(AA)	0.888	NR unit increase	Illumina [NR] (imputed)	N
1487	chr1	118277893	118277894	rs74523012	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p12	FAM46C, GDAP2	rs74523012-?	NR	9E-9		0.023911387	[0.016-0.032] unit increase	Illumina [27896057] (imputed)	N
1487	chr1	118290094	118290095	rs319467	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	1p12		rs319467-?	NR	9E-6				Illumina [7401356] (imputed)	N
1487	chr1	118295971	118295972	rs143098341	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p12	NR	rs143098341-G	0.01394	6E-11	(DPP7)	0.1646	NR unit increase	Illumina [1671387] (imputed)	N
1487	chr1	118330793	118330794	rs143683645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p12		rs143683645-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1488	chr1	118425401	118425402	rs77328675	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs77328675-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1489	chr1	118502732	118502732	rs557563970	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	1p12	WDR3	rs557563970-CGT	41.74	3E-9	(recessive)	0.94	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1489	chr1	118521270	118521271	rs74557801	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1p12	SPAG17	rs74557801-G	0.997	5E-6	(AA)	1.59	NR unit increase	Illumina [NR] (imputed)	N
1489	chr1	118522544	118522545	rs11803553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs11803553-A	0.404899	8E-15				Affymetrix, Illumina [24649327] (imputed)	N
1489	chr1	118554274	118554275	rs67803788	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p12	SPAG17	rs67803788-A	NR	4E-12		0.0432917	NR unit increase	NR [NR] (imputed)	N
1489	chr1	118554586	118554588	rs148230722	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	1p12	NR	rs148230722-?	NR	5E-6		0.4332	[0.24-0.63] unit increase	Illumina [at least 560000] (imputed)	N
1490	chr1	118628800	118628801	rs115735582	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs115735582-C	0.0220628	5E-9		0.0615501	[0.041-0.082] unit increase	NR [19129689] (imputed)	N
1490	chr1	118653765	118653766	rs1962373	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	NR	rs1962373-A	0.3161	1E-6	(EA)	0.0335	[0.02-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1490	chr1	118667817	118667818	rs115159272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1p12		rs115159272-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1490	chr1	118694154	118694155	rs10754369	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p12		rs10754369-T	0.05	8E-11		6.5	z score increase	Affymetrix [9061022] (imputed)	N
1490	chr1	118700104	118700105	rs17037950	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p12	NR	rs17037950-A	0.0533	7E-9				NR [9056863] (imputed)	N
1490	chr1	118744919	118744920	rs12074373	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1p12	NR	rs12074373-?	NR	3E-17				Affymetrix [NR]	N
1491	chr1	118752565	118752566	rs12140402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs12140402-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118757033	118757034	rs4411121	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	1p12		rs4411121-T	0.3137	2E-11		1.0669457	[1.04685282-1.087424059]	Affymetrix, Illumina [NR] (imputed)	N
1491	chr1	118761733	118761734	rs10923523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p12		rs10923523-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1491	chr1	118768483	118768484	rs6687705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs6687705-G	NR	1E-8		0.0167413	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1491	chr1	118769283	118769284	rs574063085	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p12		rs574063085-C	0.993	1E-8		0.43	[-0.57--0.28] % decrease	Affymetrix [NR] (imputed)	N
1491	chr1	118770270	118770271	rs2359714	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1p12	SPAG17, TBX15	rs2359714-?	NR	4E-9		0.071	[0.047-0.095] unit increase	Illumina [12039487] (imputed)	N
1491	chr1	118782658	118782659	rs10802015	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	1p12		rs10802015-?	NR	2E-10		0.041	[0.027-0.055] unit decrease	Affymetrix [9906178] (imputed)	N
1491	chr1	118787874	118787875	rs12127821	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs12127821-C	0.464609	5E-34		0.0379451	[0.032-0.044] unit decrease	NR [19129689] (imputed)	N
1491	chr1	118816728	118816729	rs7527203	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1p12	SPAG17	rs7527203-A	0.013	2E-6	(Total T3 )	0.03	[NR] ng/dL increase	Illumina [899892]	N
1491	chr1	118823564	118823565	rs10923531	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	1p12		rs10923531-T	0.2631	9E-6		0.2313	[0.13-0.33] unit increase	NR [NR] (imputed)	N
1491	chr1	118823564	118823565	rs10923531	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	1p12	SPAG17, TBX15	rs10923531-T	0.2631	6E-6	(male)	0.1983	[0.11-0.28] unit decrease	NR [NR] (imputed)	N
1491	chr1	118831675	118831676	rs9428240	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	1p12	SPAG17, TBX15	rs9428240-T	0.5907	2E-7		0.1806	[0.11-0.25] unit decrease	NR [NR] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1p12		rs7513464-C	NR	2E-119		0.0313	[0.029-0.034] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1p12		rs7513464-C	0.52118	5E-55		0.0317684	[0.028-0.036] unit decrease	Illumina [13479295] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1p12	RNA5SP56	rs7513464-C	NR	3E-9		0.0198696	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p12	SPAG17, TBX15	rs7513464-?	NR	1E-63		0.048455127	[0.043-0.054] unit decrease	Illumina [27896057] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p12	NR	rs7513464-?	NR	1E-13		0.04508974	[0.033-0.057] unit decrease	Illumina [34656550] (imputed)	N
1491	chr1	118849761	118849762	rs7513464	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1p12	SPAG17	rs7513464-C	0.37	2E-32		0.063	[0.051-0.075] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1491	chr1	118849908	118849909	rs7513580	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	SPAG17	rs7513580-G	0.696	2E-11	(EA, men)	0.0475	[0.034-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118849908	118849909	rs7513580	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	SPAG17	rs7513580-G	0.6957	3E-12	(EA)	0.0341	[0.024-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118849908	118849909	rs7513580	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7513580-?	0.6957	7E-11	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118849986	118849987	rs6428739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs6428739-C	NR	2E-13		0.0251225	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
1491	chr1	118850500	118850501	rs59051938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p12		rs59051938-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-C	0.766	6E-16		0.034	[0.026-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-C	0.766	1E-9	(women)	0.0377	[0.026-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-C	0.766	1E-10	(men)	0.0398	[0.028-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1p12	SPAG17	rs12731372-C	0.7625	2E-6		0.0391	[0.023-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	SPAG17	rs12731372-C	0.7693	2E-8	(women)	0.0398	[0.026-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	SPAG17	rs12731372-C	0.766	2E-11		0.0325	[0.023-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	SPAG17	rs12731372-C	0.7626999999999999	3E-10	(men)	0.0442	[0.03-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-?	0.766	6E-11	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-?	0.766	3E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs12731372-?	0.766	2E-15				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs12731372-T	0.2363	8E-7		0.0204	[0.012-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	SPAG17	rs12731372-C	0.7659	5E-7		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1491	chr1	118852974	118852975	rs12731372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	SPAG17	rs12731372-C	0.7625	1E-7	(EA)	0.0213	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1491	chr1	118853651	118853652	rs9428103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs9428103-A	NR	7E-9		0.0274931	[0.018-0.037] unit increase	Affymetrix [321114] (imputed)	N
1491	chr1	118855586	118855587	rs9428104	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p12	NR	rs9428104-?	NR	2E-13		0.04619892	[0.034-0.059] unit increase	Illumina [34656550] (imputed)	N
1491	chr1	118855586	118855587	rs9428104	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1p12	RNA5SP56	rs9428104-A	0.2364	1E-9		0.0489	[0.033-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1491	chr1	118855586	118855587	rs9428104	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p12	SPAG17	rs9428104-A	0.247	3E-36		0.043	[0.037-0.049] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1491	chr1	118855586	118855587	rs9428104	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1p12	SPAG17	rs9428104-A	0.24	6E-23		0.041	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1491	chr1	118855811	118855812	rs12738523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs12738523-T	NR	8E-15		0.0235234	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1491	chr1	118858283	118858284	rs9428108	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs9428108-?	NR	5E-21				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118858438	118858439	rs74113493	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs74113493-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118861989	118861990	rs57504147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs57504147-G	NR	2E-8		0.0182844	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
1491	chr1	118861989	118861990	rs57504147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs57504147-G	NR	6E-12		0.0220634	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1491	chr1	118862070	118862072	rs200154334	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	1p12	SPAG17, TBX15	rs200154334-?	0.2479	8E-14		0.034	[0.024-0.044] unit increase	Affymetrix [27624732] (imputed)	N
1491	chr1	118862070	118862072	rs200154334	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	1p12	SPAG17, TBX15	rs200154334-C	NR	2E-9		0.138	[0.093-0.183] unit decrease	Affymetrix [28509962] (imputed)	N
1491	chr1	118862668	118862669	rs17038164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs17038164-?	NR	5E-116				NR [~ 8900000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1p12		rs7536458-G	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs7536458-G	NR	9E-22		0.0308929	[0.025-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs7536458-G	NR	2E-8		0.0180471	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1p12	SPAG17	rs7536458-T	0.737635	2E-10		0.0101185	[0.007-0.0132] unit decrease	Affymetrix [12370749]	N
1491	chr1	118864601	118864602	rs7536458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs7536458-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs7536458-?	NR	3E-49				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p12		rs7536458-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7536458-T	0.7428	6E-7	(EA, women)	0.0279	[0.017-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7536458-T	0.7428	5E-10	(EA, men)	0.0401	[0.027-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7536458-T	0.7428	3E-14	(EA)	0.0327	[0.024-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7536458-?	0.7428	2E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	SPAG17	rs7536458-?	0.7428	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	6E-14		0.0348	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	4E-9	(men)	0.0388	[0.026-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	3E-7	(women)	0.0319	[0.02-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	7E-17				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	3E-10	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	2E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	5E-10	(men)	0.0355	[0.024-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	2E-15		0.0333	[0.025-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	SPAG17	rs7536458-T	0.748	1E-8	(women)	0.0321	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	SPAG17	rs7536458-T	0.7473	4E-12	(EA, men)	0.038	[0.027-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	SPAG17	rs7536458-T	0.7473	2E-7	(EA,women)	0.026	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	SPAG17	rs7536458-T	0.7473	1E-15	(EA)	0.0305	[0.023-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1491	chr1	118864601	118864602	rs7536458	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	1p12	SPAG17	rs7536458-G	0.25	1E-10		0.064	[0.044-0.084] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RNA5SP56	rs7534091-G	NR	2E-12		0.025038	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs7534091-G	NR	4E-15		0.0279133	[0.021-0.035] unit decrease	Affymetrix [127266] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs7534091-G	NR	3E-30		0.040131	[0.033-0.047] unit decrease	Affymetrix [321114] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs7534091-G	NR	8E-15		0.027349	[0.02-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p12	NR	rs7534091-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p12	NR	rs7534091-?	NR	1E-11		0.04491851	[0.032-0.058] unit decrease	Illumina [34656550] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p12	NA	rs7534091-A	0.7182	7E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1491	chr1	118864615	118864616	rs7534091	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1p12	SPAG17	rs7534091-A	0.74	2E-16		1.22	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1491	chr1	118867059	118867060	rs10737741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs10737741-T	NR	5E-9		0.021723	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1491	chr1	118867059	118867060	rs10737741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs10737741-T	NR	1E-9		0.0208918	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
1491	chr1	118868033	118868034	rs115875173	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1p12	intergenic	rs115875173-C	NR	4E-6		0.526031	[0.3-0.75] unit decrease	Illumina [> 6200000] (imputed)	N
1491	chr1	118868404	118868405	rs17038182	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	1p12	SPAG17, TBX15	rs17038182-G	0.4187	7E-7	(height)	0.4648	NR unit decrease	Affymetrix [305158]	N
1491	chr1	118868404	118868405	rs17038182	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p12	NR	rs17038182-?	NR	2E-10		0.04074289	[0.028-0.053] unit decrease	Illumina [34656550] (imputed)	N
1491	chr1	118868404	118868405	rs17038182	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	1p12	intergenic	rs17038182-C	0.42	5E-7		0.3	[0.18-0.42] cm decrease	Affymetrix [2156535] (imputed)	N
1491	chr1	118868796	118868796	rs79007519	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1p12	RNA5SP56	rs79007519-T	0.7765	5E-7		0.0395	[0.024-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1491	chr1	118870372	118870373	rs60804050	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p12	intergenic	rs60804050-A	0.2559	5E-24		0.0217	[0.018-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1491	chr1	118879556	118879557	rs12752809	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p12	WARS2	rs12752809-C	NR	1E-11		0.108775	[0.077-0.14] unit increase	Affymetrix [27512692] (imputed)	N
1491	chr1	118881688	118881689	rs12083887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p12		rs12083887-?	NR	2E-48				NR [~ 8900000] (imputed)	N
1491	chr1	118881688	118881689	rs12083887	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs12083887-A	0.40168	8E-46		0.0495812	[0.043-0.056] unit increase	NR [19129689] (imputed)	N
1491	chr1	118881688	118881689	rs12083887	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1p12		rs12083887-G	0.39	9E-18		0.18	[0.14-0.22] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1491	chr1	118881688	118881689	rs12083887	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p12	NR	rs12083887-G	NR	7E-13		0.0451607	NR unit decrease	NR [NR] (imputed)	N
1491	chr1	118881688	118881689	rs12083887	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	1p12	SPAG17, TBX15	rs12083887-?	NR	9E-14		1.1862396	[1.13-1.24]	Illumina [13436641] (imputed)	N
1492	chr1	118882591	118882591	rs140647391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs140647391-GTGC	NR	4E-8		0.0169888	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118883972	118883973	rs12735613	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1p12	NR	rs12735613-?	NR	5E-11		0.04492092	[0.031-0.058] unit decrease	Illumina [34656550] (imputed)	N
1492	chr1	118883972	118883973	rs12735613	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1p12	SPAG17	rs12735613-A	0.24	4E-11		0.08	[0.05-0.11] s.d. decrease (males)	Affymetrix [402951]	N
1492	chr1	118885525	118885526	rs2474944	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p12	NR	rs2474944-?	NR	8E-6	(female)	0.11739	[0.066-0.169] unit increase	Affymetrix [7794483] (imputed)	N
1492	chr1	118885525	118885526	rs2474944	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1p12	NR	rs2474944-?	NR	5E-7		0.12107	[0.074-0.168] unit increase	Affymetrix [7794483] (imputed)	N
1492	chr1	118891084	118891085	rs12097390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RNA5SP56	rs12097390-T	NR	3E-9		0.019753	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1492	chr1	118891084	118891085	rs12097390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs12097390-T	NR	3E-10		0.0208783	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
1492	chr1	118891084	118891085	rs12097390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs12097390-T	NR	4E-10		0.0205029	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118891084	118891085	rs12097390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs12097390-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1492	chr1	118891084	118891085	rs12097390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs12097390-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1492	chr1	118896811	118896812	rs9428114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs9428114-A	NR	4E-9		0.0254007	[0.017-0.034] unit increase	Affymetrix [321788] (imputed)	N
1492	chr1	118896811	118896812	rs9428114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs9428114-A	NR	4E-10		0.0259312	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
1492	chr1	118898011	118898012	rs61837274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs61837274-C	NR	6E-10		0.0289226	[0.02-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1492	chr1	118902977	118902978	rs2474937	23708190	Hu Z	2013-05-26	Nat Genet	A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations.	Congenital heart malformation	945 Han Chinese ancestry cases, 1,246 Han Chinese ancestry controls	2,160 Han Chinese ancestry cases, 3,866 Han Chinese ancestry controls	1p12	TBX15, SPAG17	rs2474937-C	0.08	8E-10		1.4	[1.26-1.56]	Illumina [708275]	N
1492	chr1	118911294	118911295	rs35043843	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1p12	SPAG17	rs35043843-T	0.7562	2E-7		0.0151	[0.0094-0.0208] unit decrease	Affymetrix [19819130] (imputed)	N
1492	chr1	118911294	118911295	rs35043843	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1p12	SPAG17	rs35043843-T	0.7562	4E-18		0.0238	[0.019-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1492	chr1	118911294	118911295	rs35043843	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1p12	SPAG17	rs35043843-T	0.7562	3E-13		0.0199	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1492	chr1	118911294	118911295	rs35043843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p12		rs35043843-?	NR	9E-23				NR [~ 8900000] (imputed)	N
1492	chr1	118924844	118924845	rs4141768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs4141768-G	NR	5E-9		0.0185625	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118929860	118929861	rs67180520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs67180520-A	NR	1E-11		0.0212173	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
1492	chr1	118933213	118933213	rs35939629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	RNA5SP56	rs35939629-TC	NR	8E-11		0.0241442	[0.017-0.031] unit increase	Affymetrix [321788] (imputed)	N
1492	chr1	118936320	118936321	rs10489732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs10489732-T	NR	2E-8		0.0174028	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118936320	118936321	rs10489732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs10489732-T	NR	1E-11		0.0190091	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1492	chr1	118941010	118941011	rs6692932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs6692932-A	NR	7E-9		0.0251409	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1492	chr1	118941406	118941407	rs12756333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs12756333-G	NR	2E-11		0.0323474	[0.023-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1492	chr1	118942136	118942137	rs2208395	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs2208395-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1492	chr1	118970052	118970053	rs6666020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs6666020-C	NR	2E-9		0.0254027	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1492	chr1	118970052	118970053	rs6666020	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs6666020-C	0.160865	1E-14		0.0357419	[0.027-0.045] unit increase	NR [19129689] (imputed)	N
1492	chr1	118971496	118971497	rs114523803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RNA5SP56	rs114523803-A	NR	2E-8		0.0290381	[0.019-0.039] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118978417	118978418	rs1146348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	RNA5SP56	rs1146348-G	NR	2E-10		0.0232332	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
1492	chr1	118991926	118991927	rs11800997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs11800997-G	NR	4E-8		0.0213819	[0.014-0.029] unit increase	Affymetrix [321788] (imputed)	N
1492	chr1	118991926	118991927	rs11800997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	PSMC1P12	rs11800997-G	NR	2E-8		0.0241853	[0.016-0.033] unit increase	Affymetrix [323858] (imputed)	N
1492	chr1	118999218	118999219	rs187100239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs187100239-A	NR	4E-10		0.0850248	[0.058-0.112] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	118999218	118999219	rs187100239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs187100239-A	NR	5E-10		0.0849903	[0.058-0.112] unit increase	Affymetrix [321169] (imputed)	N
1492	chr1	118999218	118999219	rs187100239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs187100239-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1492	chr1	119003533	119003534	rs79490233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs79490233-A	NR	3E-9		0.0416889	[0.028-0.056] unit increase	Affymetrix [321114] (imputed)	N
1492	chr1	119008208	119008209	rs1213984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs1213984-G	NR	2E-8		0.0222005	[0.014-0.03] unit increase	Affymetrix [321788] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	PSMC1P12	rs116679284-T	NR	5E-10		0.0479295	[0.033-0.063] unit decrease	Affymetrix [319769] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	PSMC1P12	rs116679284-T	NR	6E-9		0.0502082	[0.033-0.067] unit decrease	Affymetrix [323858] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs116679284-T	NR	3E-11		0.0513838	[0.036-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	PSMC1P12	rs116679284-T	NR	3E-10		0.0542096	[0.037-0.071] unit decrease	Affymetrix [127266] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs116679284-T	NR	2E-12		0.0548993	[0.04-0.07] unit decrease	Affymetrix [321114] (imputed)	N
1493	chr1	119014844	119014845	rs116679284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	PSMC1P12	rs116679284-T	NR	1E-11		0.057648	[0.041-0.074] unit decrease	Affymetrix [321114] (imputed)	N
1493	chr1	119019513	119019514	rs6680747	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1p12	NR	rs6680747-?	NR	3E-6		0.0744	[0.043-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
1493	chr1	119023639	119023640	rs1229119	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	1p12	TBX15	rs1229119-T	0.4	2E-8	(right exocanthion-right cheilion distance)	0.079	NR unit increase	Illumina [7029494] (imputed)	N
1493	chr1	119030697	119030698	rs10923574	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	NR	rs10923574-C	0.3321	4E-7	(EA)	0.0344	[0.021-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
1493	chr1	119030697	119030698	rs10923574	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Folding of antihelix	4,919 Latin American individuals	NA	1p12	NR	rs10923574-?	NR	4E-7	(FDR adjusted)			Illumina [671038]	N
1493	chr1	119054553	119054554	rs61836834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs61836834-A	NR	2E-8		0.0449225	[0.029-0.061] unit decrease	Affymetrix [321114] (imputed)	N
1493	chr1	119055725	119055726	rs138843352	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs138843352-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119091074	119091075	rs12047924	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs12047924-A	0.7941	3E-43		0.1865	[0.16-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1493	chr1	119091074	119091075	rs12047924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs12047924-G	NR	5E-8		0.0173592	[0.011-0.024] unit increase	Affymetrix [321788] (imputed)	N
1493	chr1	119097361	119097362	rs149691914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs149691914-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119099924	119099925	rs56654623	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-274 sp000432155 abundance in stool	5,959 Finnish ancestry individuals	NA	1p12		rs56654623-G	0.0677736	3E-8		0.215303	[0.14-0.29] unit increase	Illumina [7980478] (imputed)	N
1493	chr1	119099924	119099925	rs56654623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs56654623-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119114492	119114493	rs138849963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	PSMC1P12	rs138849963-C	NR	2E-8		0.0201463	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1493	chr1	119114492	119114493	rs138849963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	PSMC1P12	rs138849963-C	NR	9E-11		0.0258152	[0.018-0.034] unit increase	Affymetrix [323858] (imputed)	N
1493	chr1	119114492	119114493	rs138849963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs138849963-C	NR	7E-9		0.0207397	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1493	chr1	119114492	119114493	rs138849963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	PSMC1P12	rs138849963-C	NR	6E-11		0.0260288	[0.018-0.034] unit increase	Affymetrix [127266] (imputed)	N
1493	chr1	119123181	119123182	rs182480358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs182480358-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119123181	119123182	rs182480358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs182480358-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119126234	119126235	rs116821116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	PSMC1P12	rs116821116-T	NR	4E-8		0.0447731	[0.029-0.061] unit increase	Affymetrix [321114] (imputed)	N
1493	chr1	119126234	119126235	rs116821116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs116821116-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119126234	119126235	rs116821116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs116821116-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119128187	119128188	rs2659207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	PSMC1P12	rs2659207-T	NR	2E-8		0.0198936	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1493	chr1	119128187	119128188	rs2659207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	PSMC1P12	rs2659207-T	NR	1E-8		0.0202153	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1493	chr1	119128187	119128188	rs2659207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs2659207-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119128187	119128188	rs2659207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs2659207-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1493	chr1	119144431	119144432	rs10802047	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	1p12	intergenic	rs10802047-?	0.38	2E-6		0.25	[0.15-0.36] unit decrease	Illumina [2095209]	N
1494	chr1	119144635	119144636	rs2360027	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p12	NR	rs2360027-?	NR	5E-7		0.0423	[0.026-0.059] unit increase	Illumina [at least 560000] (imputed)	N
1494	chr1	119150967	119150968	rs7513680	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 51)	3,566 European ancestry individuals	4,680 European ancestry individuals	1p12		rs7513680-C	0.388639551	7E-13				Illumina [7417619] (imputed)	N
1494	chr1	119159880	119159881	rs1575223	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1p12		rs1575223-C	0.8934	4E-6		0.0834	[0.048-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1494	chr1	119159880	119159881	rs1575223	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs1575223-C	0.4513	1E-22		0.1569	[0.13-0.19] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1494	chr1	119159880	119159881	rs1575223	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p12		rs1575223-C	0.8962	3E-9		0.0928	[0.062-0.123] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1494	chr1	119159880	119159881	rs1575223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs1575223-G	0.98305	9E-13				Affymetrix, Illumina [24649327] (imputed)	N
1494	chr1	119159977	119159978	rs35546571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs35546571-?	NR	1E-24				Affymetrix [~ 8270000] (imputed)	N
1494	chr1	119159977	119159978	rs35546571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs35546571-?	NR	4E-32				Affymetrix [~ 8270000] (imputed)	N
1494	chr1	119228870	119228871	rs12047028	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p12		rs12047028-?	NR	6E-26		0.0319492	[0.026-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1494	chr1	119233828	119233829	rs112488402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs112488402-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1494	chr1	119248112	119248113	rs145701806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP4-630J13.1	rs145701806-T	NR	3E-9		0.0388145	[0.026-0.052] unit decrease	Affymetrix [321114] (imputed)	N
1494	chr1	119264386	119264387	rs575759540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP4-630J13.1	rs575759540-G	NR	1E-11		0.0549172	[0.039-0.071] unit increase	Affymetrix [323858] (imputed)	N
1494	chr1	119264386	119264387	rs575759540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP4-630J13.1	rs575759540-G	NR	4E-12		0.0561223	[0.04-0.072] unit increase	Affymetrix [127266] (imputed)	N
1494	chr1	119267620	119267621	rs10923654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP4-630J13.1	rs10923654-C	NR	2E-8		0.0192922	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1494	chr1	119267620	119267621	rs10923654	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs10923654-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1494	chr1	119274381	119274382	rs115165620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p12		rs115165620-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1495	chr1	119278277	119278278	rs3118201	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p12	NR	rs3118201-?	NR	5E-7		0.0466	[0.028-0.065] unit decrease	Illumina [at least 560000] (imputed)	N
1495	chr1	119281760	119281761	rs111962736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p12		rs111962736-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1495	chr1	119282169	119282169	rs141407226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP4-630J13.1	rs141407226-GA	NR	1E-8		0.024284	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
1495	chr1	119282169	119282169	rs141407226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP4-630J13.1	rs141407226-GA	NR	1E-9		0.0257639	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1495	chr1	119282169	119282169	rs141407226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP4-630J13.1	rs141407226-GA	NR	4E-9		0.0252323	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
1495	chr1	119285700	119285701	rs12039075	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	1p12	NR	rs12039075-A	0.13	1E-10		0.031	[0.021-0.041] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1495	chr1	119306865	119306866	rs10923672	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs10923672-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1495	chr1	119343121	119343122	rs12023657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs12023657-G	NR	6E-11		0.0238808	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1495	chr1	119343121	119343122	rs12023657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs12023657-G	NR	2E-9		0.0218877	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1495	chr1	119343121	119343122	rs12023657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs12023657-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1495	chr1	119343121	119343122	rs12023657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs12023657-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1495	chr1	119358254	119358255	rs116042116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs116042116-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1495	chr1	119376229	119376230	rs142225866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs142225866-G	NR	2E-8		0.0265563	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
1495	chr1	119383817	119383818	rs1766803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p12		rs1766803-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1495	chr1	119403484	119403485	rs17022585	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	1p12	NR	rs17022585-?	NR	5E-6		1.7455	[1-2.49] unit decrease	Illumina [at least 560000] (imputed)	N
1496	chr1	119409591	119409592	rs57445715	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p12	intergenic	rs57445715-T	0.7328	3E-12		0.0148	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1496	chr1	119412316	119412317	rs80278614	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1p12	TBX15	rs80278614-A	0.054405	6E-12		0.040367	[0.029-0.052] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1496	chr1	119421208	119421209	rs6681289	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ resting CD4 regulatory T cell	3,118 Sardinian (founder/genetic isolate) ancestry individuals	NA	1p12		rs6681289-A	0.18839	3E-8		0.186	[0.12-0.25] unit decrease	Illumina [18240965] (imputed)	N
1496	chr1	119425328	119425330	rs144802237	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1p12	NR	rs144802237-A	0.01045	2E-9	(ALDH5A1)	0.5413	NR unit increase	Illumina [1671387] (imputed)	N
1496	chr1	119425395	119425396	rs76604417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs76604417-C	NR	5E-10		0.026712	[0.018-0.035] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119425395	119425396	rs76604417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs76604417-C	NR	3E-10		0.0295081	[0.02-0.039] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119425395	119425396	rs76604417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs76604417-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs61730011-C	NR	1E-22		0.0651257	[0.052-0.078] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs61730011-C	NR	6E-15		0.0584437	[0.044-0.073] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs61730011-C	NR	8E-25		0.0684742	[0.055-0.082] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs61730011-C	NR	2E-16		0.0616478	[0.047-0.076] unit decrease	Affymetrix [127266] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs61730011-C	NR	2E-25		0.06994	[0.057-0.083] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs61730011-C	NR	1E-14		0.0570164	[0.043-0.071] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	TBX15	rs61730011-C	NR	2E-8		0.0389642	[0.025-0.053] unit increase	Affymetrix [321788] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs61730011-C	NR	6E-16		0.0544787	[0.041-0.068] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119427466	119427467	rs61730011	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	1p12	TBX15	rs61730011-A	0.9568	3E-9		0.0427	[0.029-0.057] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119427466	119427467	rs61730011	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	1p12	TBX15	rs61730011-A	0.9547	6E-9		0.0424	[0.028-0.057] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119427466	119427467	rs61730011	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	1p12	TBX15	rs61730011-A	0.9573	9E-7		0.0382	[0.023-0.053] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119427466	119427467	rs61730011	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	1p12	TBX15	rs61730011-A	0.957	2E-14		0.0406	[0.03-0.051] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119427466	119427467	rs61730011	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	1p12	TBX15	rs61730011-A	0.9559	7E-13		0.039	[0.028-0.05] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119432437	119432437	rs397976022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs397976022-A	NR	4E-10		0.026724	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119432437	119432437	rs397976022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs397976022-A	NR	1E-11		0.0323737	[0.023-0.042] unit increase	Affymetrix [323858] (imputed)	N
1496	chr1	119432437	119432437	rs397976022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs397976022-A	NR	5E-11		0.0281554	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119432437	119432437	rs397976022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs397976022-A	NR	3E-12		0.0332331	[0.024-0.043] unit increase	Affymetrix [127266] (imputed)	N
1496	chr1	119432437	119432437	rs397976022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs397976022-A	NR	3E-8		0.0238974	[0.015-0.032] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119438822	119438823	rs111668293	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1p12	WARS2	rs111668293-TG	NR	3E-19		0.178323	[0.14-0.22] unit decrease	Affymetrix [27512692] (imputed)	N
1496	chr1	119438822	119438823	rs111668293	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p12	TBX15, WARS2	rs111668293-T	NR	3E-18		0.0766429	NR unit decrease	NR [NR] (imputed)	N
1496	chr1	119447443	119447444	rs1779427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs1779427-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119447443	119447444	rs1779427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs1779427-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119450101	119450102	rs61806199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs61806199-T	NR	2E-9		0.0245406	[0.017-0.033] unit increase	Affymetrix [323858] (imputed)	N
1496	chr1	119450101	119450102	rs61806199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs61806199-T	NR	3E-9		0.0242123	[0.016-0.032] unit increase	Affymetrix [127266] (imputed)	N
1496	chr1	119450932	119450933	rs10923696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs10923696-A	NR	2E-10		0.0258874	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119451543	119451543	rs113048062	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p12		rs113048062-?	NR	5E-40		0.0278864	[0.024-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1496	chr1	119452499	119452500	rs1766786	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	1p12	TBX15	rs1766786-?	NR	2E-13		1.1750882	[1.13-1.23]	Illumina [13537761] (imputed)	N
1496	chr1	119452616	119452617	rs12138046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs12138046-T	NR	4E-10		0.0254781	[0.018-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119452616	119452617	rs12138046	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs12138046-?	NR	5E-22				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119452757	119452758	rs1766787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs1766787-G	NR	9E-12		0.0342385	[0.024-0.044] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119452757	119452758	rs1766787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs1766787-G	NR	2E-12		0.0353801	[0.026-0.045] unit decrease	Affymetrix [127266] (imputed)	N
1496	chr1	119452757	119452758	rs1766787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs1766787-G	NR	3E-8		0.0275733	[0.018-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119453228	119453229	rs7519460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs7519460-G	NR	7E-10		0.0252642	[0.017-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119453228	119453229	rs7519460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs7519460-G	NR	1E-10		0.0264673	[0.018-0.035] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119456230	119456231	rs1361207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs1361207-G	NR	1E-14		0.0350484	[0.026-0.044] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119456588	119456589	rs11586475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs11586475-T	NR	2E-9		0.0320508	[0.022-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119456588	119456589	rs11586475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs11586475-T	NR	4E-9		0.0315106	[0.021-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119456588	119456589	rs11586475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs11586475-T	NR	1E-8		0.0307522	[0.02-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119456588	119456589	rs11586475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs11586475-T	NR	9E-10		0.0330952	[0.022-0.044] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119458116	119458117	rs1779454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs1779454-C	NR	4E-11		0.0275479	[0.019-0.036] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119458116	119458117	rs1779454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs1779454-C	NR	2E-11		0.0278463	[0.02-0.036] unit decrease	Affymetrix [127266] (imputed)	N
1496	chr1	119458116	119458117	rs1779454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs1779454-C	NR	1E-8		0.023388	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119458116	119458117	rs1779454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	TBX15	rs1779454-C	NR	3E-10		0.025904	[0.018-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119461395	119461396	rs1779431	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p12	TBX15	rs1779431-G	0.29138	6E-17		0.0168805	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
1496	chr1	119462863	119462864	rs1779433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs1779433-G	NR	8E-17		0.0373257	[0.029-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119462863	119462864	rs1779433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs1779433-G	NR	3E-18		0.038992	[0.03-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119462863	119462864	rs1779433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs1779433-G	NR	4E-13		0.0329674	[0.024-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119463132	119463133	rs78520189	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	1p12		rs78520189-A	NR	3E-7		0.2	[0.1-0.4]	Illumina [7629332] (imputed)	N
1496	chr1	119466373	119466374	rs1766793	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	1p12	NR	rs1766793-?	NR	2E-11	(Quadrant II (Nose), Segment 41)	0.04269166	NR unit decrease	NR [7417619] (imputed)	N
1496	chr1	119467921	119467922	rs72705338	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs72705338-T	0.055211	2E-13		0.0538713	[0.04-0.068] unit increase	NR [19129689] (imputed)	N
1496	chr1	119469187	119469188	rs10494217	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	1p12	TBX15	rs10494217-T	0.1737	6E-7		0.0193	[0.012-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119469187	119469188	rs10494217	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	1p12	TBX15	rs10494217-T	0.1837	4E-7		0.0198	[0.012-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119469187	119469188	rs10494217	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	1p12	TBX15	rs10494217-T	0.174	1E-10		0.0177	[0.012-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119469187	119469188	rs10494217	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	1p12	TBX15	rs10494217-T	0.1864	4E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
1496	chr1	119473034	119473035	rs6669234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs6669234-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119473971	119473972	rs17022808	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs17022808-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119482365	119482365	rs550617350	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1p12	TBX15	rs550617350-?	NR	1E-10		0.04877367	[0.034-0.064] unit decrease	Illumina [27896057] (imputed)	N
1496	chr1	119483815	119483816	rs1325941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs1325941-A	NR	3E-10		0.0179188	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119483815	119483816	rs1325941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs1325941-A	NR	1E-11		0.0183204	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119483815	119483816	rs1325941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs1325941-A	NR	4E-16		0.0232383	[0.018-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119483815	119483816	rs1325941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs1325941-A	NR	5E-16		0.0232261	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119484674	119484675	rs1361907	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs1361907-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119495314	119495315	rs12139133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1p12	TBX15	rs12139133-C	NR	1E-9		0.0231685	[0.016-0.031] unit decrease	Affymetrix [321788] (imputed)	N
1496	chr1	119497153	119497154	rs12143789	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs12143789-C	0.1892	2E-7		0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119497153	119497154	rs12143789	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs12143789-C	0.209	7E-6	(EA, men)	0.0274	[0.015-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119497153	119497154	rs12143789	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs12143789-C	0.2064	7E-6	(men)	0.0273	[0.015-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119497153	119497154	rs12143789	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs12143789-C	0.2055	8E-9	(EA)	0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119497153	119497154	rs12143789	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs12143789-C	0.2028	4E-9		0.0246	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119498103	119498104	rs61806232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs61806232-G	NR	7E-9		0.0324832	[0.021-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs17258166-C	NR	1E-8		0.0357336	[0.023-0.048] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs17258166-C	NR	3E-9		0.0374954	[0.025-0.05] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs17258166-C	NR	2E-15		0.0503128	[0.038-0.063] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs17258166-C	NR	1E-12		0.0451316	[0.033-0.058] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs17258166-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119498185	119498186	rs17258166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs17258166-?	NR	7E-17				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119498439	119498440	rs78571577	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1p12	NR	rs78571577-?	NR	4E-6		7493.6353	NR unit decrease	Illumina [2379855]	N
1496	chr1	119498666	119498667	rs6663040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs6663040-T	NR	6E-10		0.0202505	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs2645289-C	NR	5E-18		0.0506973	[0.039-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs2645289-C	NR	8E-14		0.049182	[0.036-0.062] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs2645289-C	NR	6E-20		0.0535286	[0.042-0.065] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs2645289-C	NR	2E-15		0.0520981	[0.039-0.065] unit decrease	Affymetrix [127266] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs2645289-C	NR	1E-19		0.0535998	[0.042-0.065] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs2645289-C	NR	8E-12		0.0443324	[0.032-0.057] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs2645289-C	NR	1E-14		0.0457258	[0.034-0.057] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119500218	119500219	rs2645289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs2645289-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1496	chr1	119500460	119500461	rs2489245	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs2489245-G	0.0656215	9E-15		0.0491386	[0.037-0.062] unit increase	NR [19129689] (imputed)	N
1496	chr1	119500482	119500483	rs2645288	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1p12	TBX15	rs2645288-?	NR	1E-7		0.077	[0.105-0.049] unit decrease	Illumina [12039487] (imputed)	N
1496	chr1	119500772	119500773	rs985036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs985036-A	NR	6E-17		0.0245849	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119500772	119500773	rs985036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs985036-A	NR	2E-17		0.0250444	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119500772	119500773	rs985036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs985036-A	NR	2E-13		0.0217796	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119500772	119500773	rs985036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs985036-A	NR	6E-12		0.020495	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119501102	119501103	rs12144610	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p12	NR	rs12144610-?	NR	1E-16				Illumina [at least 7383741] (imputed)	N
1496	chr1	119501737	119501738	rs10802068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs10802068-T	NR	3E-10		0.0206138	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
1496	chr1	119503842	119503843	rs984222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs984222-C	NR	8E-42		0.0395489	[0.034-0.045] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119503842	119503843	rs984222	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	1p12	NR	rs984222-?	NR	2E-7		0.03837117	[0.024-0.053] unit increase	Illumina [at least 21894105] (imputed)	N
1496	chr1	119503842	119503843	rs984222	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p12	NR	rs984222-C	NR	6E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1496	chr1	119503842	119503843	rs984222	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs984222-G	0.6225	8E-15	(EA, women)	0.0384	[0.029-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs984222-G	0.6225	2E-24	(EA)	0.0392	[0.032-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs984222-G	0.6189	2E-12	(EA,women)	0.0395	[0.029-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs984222-?	0.6225	5E-14	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs984222-?	0.6225	1E-23	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	1p12	TBX15	rs984222-G	0.6193694464999999	4E-6	(East Asian)	0.02487535	[0.014-0.035] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1496	chr1	119503842	119503843	rs984222	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	1p12	TBX15, WARS2	rs984222-G	0.64	9E-25		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1496	chr1	119504283	119504284	rs984225	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1p12	NA	rs984225-A	0.5958	1E-13		0.0122	[0.0091-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1496	chr1	119504283	119504284	rs984225	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA	1p12	TBX15	rs984225-G	0.38	2E-8		1.18	[1.12-1.25]	Affymetrix [536506]	N
1496	chr1	119504360	119504361	rs9659323	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1p12	TBX15	rs9659323-A	0.553	7E-7	(EA, men)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1496	chr1	119505433	119505434	rs10923712	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	1p12	NR	rs10923712-?	NR	1E-7		0.03851753	[0.024-0.053] unit increase	Illumina [at least 21894105] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923712-A	0.6229	1E-12	(EA, men)	0.0406	[0.029-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs10923712-A	0.6277	3E-12	(EA, men)	0.0445	[0.032-0.057] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs10923712-A	0.6229	4E-21	(EA)	0.0414	[0.033-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923712-?	0.6229	8E-13	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	8E-23		0.0389	[0.031-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	2E-10	(men)	0.0374	[0.026-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	1E-15	(women)	0.0404	[0.03-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	3E-17	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	3E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	2E-25				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	9E-18	(women)	0.0388	[0.03-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	2E-25		0.0366	[0.03-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs10923712-A	0.6025	2E-11	(men)	0.034	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs10923712-A	0.6261	2E-15	(EA,women)	0.0354	[0.027-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs10923712-A	0.6261	1E-24	(EA)	0.0354	[0.029-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119505433	119505434	rs10923712	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs10923712-A	0.6261	1E-12	(EA, men)	0.0352	[0.026-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119506863	119506864	rs77667857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs77667857-C	NR	9E-9		0.0318758	[0.021-0.043] unit decrease	Affymetrix [321016] (imputed)	N
1496	chr1	119508411	119508412	rs1779445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs1779445-T	NR	4E-31		0.041313	[0.034-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119508411	119508412	rs1779445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs1779445-T	NR	7E-32		0.0418586	[0.035-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1496	chr1	119508411	119508412	rs1779445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs1779445-T	NR	1E-26		0.0385873	[0.032-0.046] unit decrease	Affymetrix [321169] (imputed)	N
1496	chr1	119508411	119508412	rs1779445	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	1p12		rs1779445-?	NR	3E-7		0.046	[0.028-0.064] unit decrease	Affymetrix [9906178] (imputed)	N
1496	chr1	119508411	119508412	rs1779445	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	1p12		rs1779445-?	NR	6E-12		0.052	[0.036-0.068] unit increase	Affymetrix [9906178] (imputed)	N
1496	chr1	119509381	119509382	rs114189105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs114189105-A	NR	5E-13		0.0891886	[0.065-0.113] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119509381	119509382	rs114189105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs114189105-A	NR	8E-13		0.0886232	[0.064-0.113] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs61806235-G	NR	3E-13		0.0325778	[0.024-0.041] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs61806235-G	NR	9E-21		0.0462686	[0.037-0.056] unit increase	Affymetrix [323858] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs61806235-G	NR	2E-14		0.0340596	[0.025-0.043] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs61806235-G	NR	3E-21		0.0467901	[0.037-0.056] unit increase	Affymetrix [127266] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs61806235-G	NR	2E-11		0.0301125	[0.021-0.039] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs61806235-G	NR	2E-9		0.0294865	[0.02-0.039] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	TBX15	rs61806235-G	NR	2E-11		0.0341042	[0.024-0.044] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs61806235-G	NR	2E-9		0.0270358	[0.018-0.036] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	TBX15	rs61806235-G	NR	2E-8		0.027466	[0.018-0.037] unit increase	Affymetrix [323858] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs61806235-?	NR	6E-31				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs61806235-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p12	NR	rs61806235-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119516404	119516405	rs61806235	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p12	TBX15	rs61806235-A	0.8812	7E-6		0.0575	[0.032-0.083] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1496	chr1	119517356	119517357	rs10802069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs10802069-T	NR	6E-44		0.04044	[0.035-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119517356	119517357	rs10802069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs10802069-T	NR	6E-24		0.0319191	[0.026-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119517356	119517357	rs10802069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	TBX15	rs10802069-T	NR	5E-18		0.0275074	[0.021-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119517356	119517357	rs10802069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs10802069-?	NR	7E-76				Affymetrix [~ 8270000] (imputed)	N
1496	chr1	119517419	119517420	rs11584380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	TBX15	rs11584380-T	NR	1E-15		0.0228229	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119517419	119517420	rs11584380	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1p12	TBX15	rs11584380-C	0.559095	3E-36		0.0232436	[0.02-0.027] unit decrease	NR [13737936] (imputed)	N
1496	chr1	119517419	119517420	rs11584380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1p12		rs11584380-?	NR	4E-37				NR [~ 8900000] (imputed)	N
1496	chr1	119521630	119521631	rs6680737	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1p12		rs6680737-?	NR	2E-36		0.0258173	[0.022-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1496	chr1	119521630	119521631	rs6680737	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p12	TBX15	rs6680737-G	0.560218	2E-6	(women)	0.0197307	[0.011-0.029] unit decrease	NR [17166351] (imputed)	N
1496	chr1	119521630	119521631	rs6680737	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p12	TBX15	rs6680737-G	0.559674	2E-14		0.0251445	[0.019-0.032] unit decrease	NR [17166351] (imputed)	N
1496	chr1	119521630	119521631	rs6680737	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1p12	TBX15	rs6680737-G	0.559052	4E-10	(men)	0.0316782	[0.022-0.042] unit decrease	NR [17166351] (imputed)	N
1496	chr1	119522425	119522426	rs113197996	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1p12	NR	rs113197996-?	NR	3E-7		0.0428	[0.026-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
1496	chr1	119523569	119523570	rs12088206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs12088206-T	NR	3E-14		0.0235407	[0.017-0.03] unit increase	Affymetrix [321114] (imputed)	N
1496	chr1	119523569	119523570	rs12088206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	TBX15	rs12088206-T	NR	8E-16		0.0230409	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	TBX15	rs1106529-G	NR	7E-27		0.038313	[0.031-0.045] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	TBX15	rs1106529-G	NR	7E-28		0.0390786	[0.032-0.046] unit decrease	Affymetrix [127266] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	TBX15	rs1106529-G	NR	5E-16		0.0285478	[0.022-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	TBX15	rs1106529-G	NR	2E-15		0.0281458	[0.021-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	1p12	NR	rs1106529-?	NR	3E-7		0.04227875	[0.026-0.059] unit increase	Illumina [at least 21894105] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs1106529-A	0.7439	2E-7		0.0174	[0.011-0.024] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs1106529-A	0.7439	4E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs1106529-A	0.7439	5E-8	(men)	0.0323	[0.021-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs1106529-A	0.7439	3E-17		0.0334	[0.026-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15	rs1106529-A	0.7439	2E-11	(women)	0.0346	[0.024-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7579	5E-9	(EA, men)	0.0343	[0.023-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7541	2E-18	(EA)	0.035	[0.027-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7525	2E-19		0.0349	[0.027-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7515	6E-9	(men)	0.033	[0.022-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7511	3E-13	(women)	0.0377	[0.028-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531496	119531497	rs1106529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15	rs1106529-A	0.7499	3E-12	(EA, women)	0.0365	[0.026-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1496	chr1	119531763	119531764	rs12035818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	TBX15	rs12035818-A	NR	3E-9		0.0224063	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119531763	119531764	rs12035818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	TBX15	rs12035818-A	NR	1E-9		0.0230258	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
1496	chr1	119535333	119535334	rs10923715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	TBX15	rs10923715-A	NR	6E-12		0.021396	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119537685	119537686	rs2361265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP4-712E4.1	rs2361265-A	NR	5E-15		0.0298931	[0.022-0.037] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119537685	119537686	rs2361265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP4-712E4.1	rs2361265-A	NR	7E-13		0.0274638	[0.02-0.035] unit increase	Affymetrix [321169] (imputed)	N
1497	chr1	119538889	119538890	rs1409158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP4-712E4.1	rs1409158-C	NR	1E-27		0.0364064	[0.03-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1497	chr1	119538889	119538890	rs1409158	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1p12	TBX15	rs1409158-C	0.237368	1E-8		0.00923072	[0.0061-0.0124] unit increase	Affymetrix [12370749]	N
1497	chr1	119540718	119540719	rs7553422	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	RP4-712E4.1	rs7553422-T	NR	7E-13		0.0234147	[0.017-0.03] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119541451	119541452	rs1886914	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1p12	RP4-712E4.1	rs1886914-T	0.4094	4E-13		0.1113	[0.081-0.141] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1497	chr1	119541878	119541879	rs10923720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP4-712E4.1	rs10923720-C	NR	2E-22		0.0312058	[0.025-0.037] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119541878	119541879	rs10923720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP4-712E4.1	rs10923720-C	NR	4E-23		0.0317252	[0.025-0.038] unit increase	Affymetrix [127266] (imputed)	N
1497	chr1	119543470	119543471	rs7525637	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	RP4-712E4.1, RP4-712E4.2	rs7525637-G	NR	1E-13		0.0265477	[0.02-0.034] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1p12	NR	rs10923724-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1p12		rs10923724-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1p12	NR	rs10923724-T	0.56	1E-87		0.035	[0.031-0.039] unit increase	Affymetrix [2446094] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1p12	NR	rs10923724-T	0.56	5E-8				Affymetrix [2446094] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	1p12	NR	rs10923724-T	0.5569	1E-89		0.0347	[0.031-0.038] unit increase	NR [~ 27400000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1p12	NA	rs10923724-T	0.5565	2E-45		0.024	[0.021-0.027] unit increase	NR [~ 27400000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1p12	NA	rs10923724-T	0.5562	1E-14		0.0126	[0.0095-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1p12	TBX15, WARS2	rs10923724-T	0.57	2E-8		0.013	[0.0091-0.0169] unit decrease	Illumina [6108953] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	7E-9	(EA, men)	0.0345	[0.023-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	6E-22		0.0361	[0.029-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	5E-15	(women)	0.0383	[0.029-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	4E-20	(EA)	0.0369	[0.029-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	WARS2, TBX15	rs10923724-T	0.5753	7E-12	(women)	0.0402	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.586	2E-6	(men)	0.0322	[0.019-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	3E-16	(EA)	0.0373	[0.028-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5802	3E-16		0.0373	[0.028-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5753	7E-12	(women)	0.0402	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs10923724-T	0.5753	7E-12	(EA, women)	0.0402	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-?	0.5802	5E-19	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-?	0.5802	5E-19				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-?	0.5802	4E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs10923724-?	0.5802	2E-12	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-T	0.5653	9E-25		0.0366	[0.03-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-T	0.5653	6E-14	(women)	0.0394	[0.029-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-T	0.5653	2E-10	(men)	0.0342	[0.024-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs10923724-T	0.5755	2E-10	(men)	0.0389	[0.027-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs10923724-T	0.5653	5E-21		0.0385	[0.03-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15	rs10923724-T	0.5619	4E-12	(women)	0.0416	[0.03-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-?	0.5653	7E-24				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-?	0.5653	2E-13	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119546841	119546842	rs10923724	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15	rs10923724-?	0.5653	1E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119549417	119549418	rs2765539	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	1p12	NR	rs2765539-T	0.7183	5E-42		0.0258	[0.022-0.03] unit increase	NR [~ 27400000] (imputed)	N
1497	chr1	119549417	119549418	rs2765539	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2765539-T	0.7345	3E-10	(EA, women)	0.0314	[0.022-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119549417	119549418	rs2765539	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2765539-T	0.7345	1E-12	(EA)	0.0271	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP4-712E4.2	rs6428789-A	NR	2E-34		0.0347927	[0.029-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP4-712E4.2	rs6428789-A	NR	3E-31		0.0367226	[0.031-0.043] unit decrease	Affymetrix [323858] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP4-712E4.2	rs6428789-A	NR	5E-36		0.0356579	[0.03-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP4-712E4.2	rs6428789-A	NR	1E-32		0.0376398	[0.031-0.044] unit decrease	Affymetrix [127266] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs6428789-?	NR	3E-68				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119550479	119550480	rs6428789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p12		rs6428789-?	NR	4E-74				NR [~ 8900000] (imputed)	N
1497	chr1	119555145	119555146	rs2645303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP4-712E4.2	rs2645303-T	NR	2E-8		0.0178189	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119555145	119555146	rs2645303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP4-712E4.2	rs2645303-T	NR	2E-9		0.0187947	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
1497	chr1	119555145	119555146	rs2645303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RP4-712E4.2	rs2645303-T	NR	5E-9		0.0181775	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119555758	119555759	rs1325933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP4-712E4.2	rs1325933-C	NR	7E-17		0.0271645	[0.021-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1497	chr1	119558950	119558951	rs12569245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs12569245-A	NR	4E-12		0.0255645	[0.018-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1497	chr1	119558950	119558951	rs12569245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs12569245-A	NR	4E-12		0.025609	[0.018-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1497	chr1	119560275	119560276	rs115468540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs115468540-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119563538	119563539	rs12033305	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Eye morphology	2,659 Han Chinese ancestry individuals	NA	1p12	DENND1B	rs12033305-?		6E-9				Illumina [4757938] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs188264330-C	NR	4E-20		0.0285602	[0.022-0.035] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2	rs188264330-C	NR	1E-15		0.0277387	[0.021-0.035] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs188264330-C	NR	2E-21		0.0295597	[0.023-0.036] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2	rs188264330-C	NR	5E-16		0.0280816	[0.021-0.035] unit increase	Affymetrix [127266] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs188264330-C	NR	3E-23		0.0311496	[0.025-0.037] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	WARS2	rs188264330-C	NR	2E-11		0.0228906	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119567787	119567788	rs188264330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs188264330-C	NR	3E-19		0.0282082	[0.022-0.034] unit increase	Affymetrix [321169] (imputed)	N
1497	chr1	119569750	119569751	rs17023073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p12		rs17023073-?	NR	2E-66				NR [~ 8900000] (imputed)	N
1497	chr1	119572540	119572541	rs2645291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs2645291-T	NR	2E-13		0.0208874	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119572540	119572541	rs2645291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs2645291-T	NR	1E-13		0.0210235	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119572540	119572541	rs2645291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs2645291-T	NR	1E-18		0.025213	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
1497	chr1	119572596	119572597	rs76375795	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs76375795-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	1p12	NR	rs2645294-?	NR	8E-6		0.03424089	[0.019-0.049] unit increase	Illumina [at least 21894105] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1p12	NR	rs2645294-T	0.5569	1E-86		0.0341	[0.031-0.037] unit increase	NR [~ 27400000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1p12	NR	rs2645294-T	0.5563	1E-44		0.0237	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5766	2E-14	(EA, women)	0.0389	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5737	2E-6	(EA)	0.0382	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs2645294-?	0.5766	3E-13	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	6E-6	(men)	0.022	[0.012-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	1E-8		0.0159	[0.01-0.021] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	4E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	1E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	7E-10	(men)	0.0323	[0.022-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	6E-14	(women)	0.0341	[0.025-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1p12	TBX15, WARS2	rs2645294-T	0.5659	1E-21		0.0331	[0.026-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1p12	NR	rs2645294-T	0.577416449101785	1E-23				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1p12	NR	rs2645294-T	0.577416449101785	2E-25		0.03445078	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.5834	1E-7	(EA, men)	0.0266	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.5797	2E-19	(EA)	0.0312	[0.024-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.579	7E-8	(men)	0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.5774	2E-20		0.0309	[0.024-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.5752	2E-14	(EA, women)	0.035	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119574586	119574587	rs2645294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1p12	TBX15, WARS2	rs2645294-T	0.5749	7E-15	(women)	0.0346	[0.026-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1497	chr1	119577836	119577837	rs2247883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs2247883-T	NR	3E-17		0.0241377	[0.019-0.03] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119579275	119579276	rs3790553	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip thickness 2)	6,169 Latin American individuals	NA	1p12		rs3790553-?	NR	4E-7				Illumina [8703729] (imputed)	N
1497	chr1	119579275	119579276	rs3790553	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip thickness ratio 2)	6,169 Latin American individuals	NA	1p12		rs3790553-?	NR	8E-10				Illumina [8703729] (imputed)	N
1497	chr1	119579275	119579276	rs3790553	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip thickness ratio 1)	6,169 Latin American individuals	NA	1p12		rs3790553-?	NR	2E-9				Illumina [8703729] (imputed)	N
1497	chr1	119579275	119579276	rs3790553	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs3790553-G	0.163307	4E-19		0.0403633	[0.031-0.049] unit increase	NR [19129689] (imputed)	N
1497	chr1	119581150	119581151	rs17023135	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs17023135-C	0.129825	5E-27		0.0524446	[0.043-0.062] unit decrease	NR [19129689] (imputed)	N
1497	chr1	119584778	119584779	rs114473983	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs114473983-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119590397	119590398	rs2645302	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	1p12	CROCC, MFAP2, ATP13A2, SDHB	rs2645302-?		1E-8				NR [7428630] (imputed)	N
1497	chr1	119590397	119590398	rs2645302	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1p12	MACF1, KIAA0754, BMP8A, PABPC4	rs2645302-?		4E-8				NR [7428630] (imputed)	N
1497	chr1	119590397	119590398	rs2645302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs2645302-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119602603	119602604	rs12132168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs12132168-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1497	chr1	119605226	119605227	rs2361274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2, WARS2-IT1	rs2361274-T	NR	8E-13		0.0222364	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119605226	119605227	rs2361274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2, WARS2-IT1	rs2361274-T	NR	3E-13		0.0226842	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119605226	119605227	rs2361274	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs2361274-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119606129	119606130	rs12034347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2, WARS2-IT1	rs12034347-C	NR	1E-8		0.0235406	[0.015-0.032] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119606129	119606130	rs12034347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2, WARS2-IT1	rs12034347-C	NR	2E-8		0.023275	[0.015-0.031] unit increase	Affymetrix [127266] (imputed)	N
1497	chr1	119606129	119606130	rs12034347	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1p12	WARS2	rs12034347-T	0.832911	4E-8	(-154 ms)	0.0411632	[0.026-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1497	chr1	119608731	119608732	rs17185996	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1p12		rs17185996-T	0.13	1E-14		0.23	[0.17-0.29] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs115575488-C	NR	8E-13		0.0276041	[0.02-0.035] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2	rs115575488-C	NR	4E-13		0.0311614	[0.023-0.04] unit increase	Affymetrix [323858] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs115575488-C	NR	1E-13		0.0286192	[0.021-0.036] unit increase	Affymetrix [319769] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2	rs115575488-C	NR	3E-13		0.0312033	[0.023-0.04] unit increase	Affymetrix [127266] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs115575488-C	NR	6E-11		0.0254658	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs115575488-C	NR	1E-9		0.0238419	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
1497	chr1	119608825	119608826	rs115575488	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p12	NR	rs115575488-?	NR	3E-9				Illumina [at least 7383741] (imputed)	N
1497	chr1	119608914	119608915	rs6693390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2	rs6693390-T	NR	3E-22		0.0364108	[0.029-0.044] unit decrease	Affymetrix [323858] (imputed)	N
1497	chr1	119608914	119608915	rs6693390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2	rs6693390-T	NR	7E-23		0.0369354	[0.03-0.044] unit decrease	Affymetrix [127266] (imputed)	N
1497	chr1	119608914	119608915	rs6693390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	WARS2	rs6693390-T	NR	3E-10		0.0232754	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1497	chr1	119608914	119608915	rs6693390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	WARS2	rs6693390-T	NR	8E-9		0.0214292	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
1497	chr1	119620356	119620357	rs10047100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1p12	WARS2	rs10047100-T	0.754	6E-6		0.0425	[0.024-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1497	chr1	119624162	119624163	rs2885226	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1p12	NR	rs2885226-C	0.3909	8E-9				NR [9056863] (imputed)	N
1497	chr1	119627433	119627434	rs80193249	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs80193249-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119631173	119631174	rs17023223	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1p12	NR	rs17023223-T	NR	7E-6		0.011	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1497	chr1	119631173	119631174	rs17023223	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1p12	TBX15, WARS2	rs17023223-C	0.388	2E-7	(EA, men)	0.0348	[0.022-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119631173	119631174	rs17023223	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1p12	TBX15, WARS2	rs17023223-?	0.3839	4E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1497	chr1	119632383	119632384	rs72707308	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs72707308-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119636540	119636541	rs7537207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	WARS2	rs7537207-C	NR	4E-13		0.0237376	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1497	chr1	119642295	119642296	rs12064109	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1p12		rs12064109-C	0.25	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
1497	chr1	119642295	119642296	rs12064109	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1p12	TBX15, WARS2	rs12064109-?		8E-9				NR [7428630] (imputed)	N
1497	chr1	119643819	119643820	rs61808932	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 22)	19,670 European ancestry individuals	NA	1p12		rs61808932-?	NR	2E-25				NR [9705931] (imputed)	N
1497	chr1	119645165	119645166	rs78664615	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	1p12	WARS2	rs78664615-T	0.8667	6E-6	(male)	0.1818	[0.1-0.26] unit decrease	NR [NR] (imputed)	N
1497	chr1	119650794	119650795	rs10923750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs10923750-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1497	chr1	119656866	119656867	rs6428792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs6428792-G	NR	1E-36		0.0368093	[0.031-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1497	chr1	119656866	119656867	rs6428792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	WARS2	rs6428792-G	NR	5E-14		0.0238287	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1497	chr1	119656866	119656867	rs6428792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs6428792-G	NR	6E-35		0.0360148	[0.03-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1497	chr1	119656866	119656867	rs6428792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	WARS2	rs6428792-G	NR	9E-10		0.0194867	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1497	chr1	119659848	119659849	rs6677940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs6677940-A	NR	4E-23		0.0307151	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119659848	119659849	rs6677940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs6677940-A	NR	5E-24		0.0313213	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1497	chr1	119659848	119659849	rs6677940	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1p12	NR	rs6677940-A	0.289864	5E-17		0.0332375	[0.025-0.041] unit increase	NR [19129689] (imputed)	N
1498	chr1	119672648	119672649	rs17186024	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p12	TBX15, WARS2	rs17186024-A	NR	6E-17		0.0768261	NR unit decrease	NR [NR] (imputed)	N
1498	chr1	119673331	119673331	rs147304175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2	rs147304175-AT	NR	2E-13		0.0545528	[0.04-0.069] unit increase	Affymetrix [323858] (imputed)	N
1498	chr1	119673331	119673331	rs147304175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2	rs147304175-AT	NR	7E-14		0.0553597	[0.041-0.07] unit increase	Affymetrix [127266] (imputed)	N
1498	chr1	119673331	119673331	rs147304175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	WARS2	rs147304175-AT	NR	3E-9		0.0432798	[0.029-0.058] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119674086	119674087	rs9428295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1p12		rs9428295-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1498	chr1	119674224	119674225	rs57055643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs57055643-A	NR	6E-10		0.0176464	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs77074398-T	NR	4E-15		0.0330334	[0.025-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	WARS2	rs77074398-T	NR	2E-11		0.0316018	[0.022-0.041] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs77074398-T	NR	4E-16		0.0341927	[0.026-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	WARS2	rs77074398-T	NR	2E-12		0.0331226	[0.024-0.042] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs77074398-T	NR	9E-15		0.0328854	[0.025-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119679783	119679784	rs77074398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs77074398-T	NR	6E-12		0.0292996	[0.021-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	WARS2	rs77261529-A	NR	3E-26		0.0719179	[0.059-0.085] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	WARS2	rs77261529-A	NR	5E-28		0.0744721	[0.061-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	WARS2	rs77261529-A	NR	1E-29		0.0775034	[0.064-0.091] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	WARS2	rs77261529-A	NR	5E-13		0.0545729	[0.04-0.069] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	WARS2	rs77261529-A	NR	8E-23		0.0675568	[0.054-0.081] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1p12	WARS2	rs77261529-A	NR	2E-8		0.0427109	[0.028-0.058] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs77261529-?	NR	2E-45				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119680850	119680851	rs77261529	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs77261529-?	NR	2E-49				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119682369	119682370	rs3936018	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1p12		rs3936018-C	0.25	1E-20		9.33	z score increase	Affymetrix [9061022] (imputed)	N
1498	chr1	119682369	119682370	rs3936018	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1p12	NR	rs3936018-C	0.2474	1E-17				NR [9056863] (imputed)	N
1498	chr1	119682369	119682370	rs3936018	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 14)	4,680 European ancestry individuals	3,566 European ancestry individuals	1p12		rs3936018-C	0.230760774	8E-58				Illumina [7417619] (imputed)	N
1498	chr1	119686655	119686656	rs55696509	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1p12	CPT2, C1orf123, MAGOH, LRP8	rs55696509-?		2E-12				NR [7428630] (imputed)	N
1498	chr1	119692155	119692158	rs200541723	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1p12	TBX15, WARS2	rs200541723-A	NR	2E-11		0.0445961	NR unit increase	NR [NR] (imputed)	N
1498	chr1	119694429	119694430	rs12138184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12138184-T	NR	2E-9		0.021537	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119695125	119695126	rs113843053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs113843053-A	NR	2E-9		0.0395757	[0.027-0.052] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119695125	119695126	rs113843053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs113843053-A	NR	3E-9		0.0389905	[0.026-0.052] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119695125	119695126	rs113843053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs113843053-A	NR	5E-8		0.0326013	[0.021-0.044] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119695125	119695126	rs113843053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs113843053-A	NR	4E-8		0.0328668	[0.021-0.045] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119707048	119707049	rs11590888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs11590888-C	NR	3E-21		0.028933	[0.023-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119707048	119707049	rs11590888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs11590888-C	NR	2E-20		0.0284488	[0.022-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119715177	119715178	rs143745495	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p12	NR	rs143745495-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
1498	chr1	119719772	119719773	rs190709029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs190709029-A	NR	1E-15		0.0620503	[0.047-0.077] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119719772	119719773	rs190709029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs190709029-A	NR	6E-17		0.0650882	[0.05-0.08] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119722641	119722642	rs146483911	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1p12	NR	rs146483911-A	0.085	3E-6	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1498	chr1	119734550	119734551	rs10923769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs10923769-G	NR	5E-9		0.0234019	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119734550	119734551	rs10923769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs10923769-G	NR	6E-9		0.0233018	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119743190	119743191	rs61807010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs61807010-G	NR	5E-23		0.0285597	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119743190	119743191	rs61807010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs61807010-G	NR	2E-18		0.0281482	[0.022-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119743190	119743191	rs61807010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs61807010-G	NR	3E-24		0.029414	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119743190	119743191	rs61807010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs61807010-G	NR	8E-19		0.0285135	[0.022-0.035] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119752758	119752759	rs4556405	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs4556405-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119752758	119752759	rs4556405	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs4556405-?	NR	2E-29				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119759689	119759690	rs1557102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs1557102-G	NR	3E-8		0.024254	[0.016-0.033] unit increase	Affymetrix [323858] (imputed)	N
1498	chr1	119762174	119762175	rs72691108	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1p12		rs72691108-A	0.25	2E-54		15.52	z score increase	Affymetrix [9061022] (imputed)	N
1498	chr1	119762174	119762175	rs72691108	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p12	NR	rs72691108-A	0.2384	3E-13	(Pars Orbitalis)	3.3802261	[2.47-4.29] unit decrease	Affymetrix, Illumina [NR]	N
1498	chr1	119762174	119762175	rs72691108	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	1p12	TBX15	rs72691108-?	NR	6E-14	(facial module 7)			Illumina [9478608] (imputed)	N
1498	chr1	119762592	119762593	rs12119474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RPL6P2	rs12119474-A	NR	4E-15		0.026001	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119762592	119762593	rs12119474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RPL6P2	rs12119474-A	NR	1E-15		0.0265712	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119762592	119762593	rs12119474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RPL6P2	rs12119474-A	NR	3E-20		0.03074	[0.024-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119762592	119762593	rs12119474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RPL6P2	rs12119474-A	NR	8E-21		0.0313219	[0.025-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119763539	119763540	rs6701188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs6701188-G	NR	8E-11		0.023657	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119763539	119763540	rs6701188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs6701188-G	NR	3E-11		0.0241406	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119763539	119763540	rs6701188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs6701188-G	NR	1E-8		0.0204374	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119764127	119764128	rs12731215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12731215-C	NR	9E-9		0.0258866	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
1498	chr1	119764127	119764128	rs12731215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs12731215-C	NR	2E-9		0.0297907	[0.02-0.04] unit increase	Affymetrix [323858] (imputed)	N
1498	chr1	119764127	119764128	rs12731215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12731215-C	NR	2E-9		0.0268574	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
1498	chr1	119764127	119764128	rs12731215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs12731215-C	NR	3E-9		0.029476	[0.02-0.039] unit increase	Affymetrix [127266] (imputed)	N
1498	chr1	119765588	119765589	rs17258278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs17258278-G	NR	3E-11		0.0299865	[0.021-0.039] unit decrease	Affymetrix [323858] (imputed)	N
1498	chr1	119765588	119765589	rs17258278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs17258278-G	NR	6E-12		0.0310782	[0.022-0.04] unit decrease	Affymetrix [127266] (imputed)	N
1498	chr1	119765588	119765589	rs17258278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs17258278-G	NR	2E-13		0.0299624	[0.022-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119765827	119765828	rs4514278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs4514278-C	NR	2E-9		0.0204866	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119765827	119765828	rs4514278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs4514278-C	NR	3E-9		0.0204057	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119765827	119765828	rs4514278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs4514278-C	NR	3E-12		0.0241556	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1498	chr1	119765827	119765828	rs4514278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs4514278-C	NR	1E-12		0.024551	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119774959	119774959	rs587614550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs587614550-CA	NR	9E-9		0.022131	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119783222	119783223	rs6676180	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	1p12	WARS2, HAO2	rs6676180-?	NR	4E-11		0.025	[0.018-0.033] unit increase	Illumina [12039491] (imputed)	N
1498	chr1	119786774	119786775	rs72691122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs72691122-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119787541	119787542	rs11579916	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs11579916-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12730226-T	NR	9E-11		0.023835	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs12730226-T	NR	4E-14		0.0308241	[0.023-0.039] unit increase	Affymetrix [323858] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12730226-T	NR	1E-11		0.0250388	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs12730226-T	NR	3E-14		0.0308949	[0.023-0.039] unit increase	Affymetrix [127266] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs12730226-T	NR	4E-9		0.0218597	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119789288	119789289	rs12730226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1p12	RP11-418J17.1	rs12730226-T	NR	9E-9		0.0230981	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1498	chr1	119794410	119794411	rs6663892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs6663892-T	NR	2E-11		0.0279866	[0.02-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119794410	119794411	rs6663892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs6663892-T	NR	1E-12		0.0295778	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1498	chr1	119794410	119794411	rs6663892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1	rs6663892-T	NR	6E-11		0.0274774	[0.019-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1498	chr1	119796084	119796085	rs10923781	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 11)	19,670 European ancestry individuals	NA	1p12		rs10923781-?	NR	3E-9				NR [9705931] (imputed)	N
1498	chr1	119797028	119797029	rs185028854	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	NR	rs185028854-A	0.0088	7E-6	(EA)	0.1578	[0.089-0.227] unit increase	Illumina [~ 11800000] (imputed)	N
1498	chr1	119799098	119799099	rs7529542	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	1p12	NR	rs7529542-T	0.7744	1E-8	(Lateral Orbitofrontal)	9.309453	[6.11-12.51] unit decrease	Affymetrix, Illumina [NR]	N
1499	chr1	119803011	119803012	rs116565273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs116565273-A	NR	9E-9		0.0756445	[0.05-0.101] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119803011	119803012	rs116565273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs116565273-A	NR	3E-9		0.0782746	[0.052-0.104] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119803011	119803012	rs116565273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs116565273-A	NR	9E-11		0.0862662	[0.06-0.112] unit decrease	Affymetrix [321114] (imputed)	N
1499	chr1	119803011	119803012	rs116565273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs116565273-A	NR	4E-8		0.0731513	[0.047-0.099] unit decrease	Affymetrix [321169] (imputed)	N
1499	chr1	119803011	119803012	rs116565273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1p12		rs116565273-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	2E-16		0.0679584	[0.052-0.084] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	4E-9		0.0546059	[0.036-0.073] unit decrease	Affymetrix [323858] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	6E-18		0.0713029	[0.055-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	4E-10		0.0578798	[0.04-0.076] unit decrease	Affymetrix [127266] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	1E-20		0.0778205	[0.061-0.094] unit decrease	Affymetrix [321114] (imputed)	N
1499	chr1	119816254	119816255	rs75210922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.1, RP11-418J17.3	rs75210922-A	NR	7E-16		0.0674972	[0.051-0.084] unit decrease	Affymetrix [321169] (imputed)	N
1499	chr1	119832254	119832255	rs113000492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.3	rs113000492-A	NR	4E-12		0.0293278	[0.021-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1499	chr1	119832254	119832255	rs113000492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP11-418J17.3	rs113000492-A	NR	2E-9		0.0255011	[0.017-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1499	chr1	119832254	119832255	rs113000492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs113000492-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119832254	119832255	rs113000492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs113000492-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119846010	119846011	rs6656857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs6656857-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119850542	119850543	rs12031579	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p12	Intergenic	rs12031579-?		2E-6		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
1499	chr1	119850542	119850543	rs12031579	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1p12	Intergenic	rs12031579-?		1E-6		1.73	[1.39-2.16]	Illumina [7645193] (imputed)	N
1499	chr1	119850542	119850543	rs12031579	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	1p12	HAO2	rs12031579-G	0.0547	8E-7		1.8248177	[1.44-2.31]	Illumina [7521072] (imputed)	N
1499	chr1	119858684	119858685	rs7526517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1p12		rs7526517-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1499	chr1	119864892	119864893	rs140609054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1p12	RP11-418J17.3	rs140609054-T	NR	3E-10		0.063644	[0.044-0.083] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119864892	119864893	rs140609054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1p12	RP11-418J17.3	rs140609054-T	NR	8E-11		0.0657576	[0.046-0.086] unit decrease	Affymetrix [319769] (imputed)	N
1499	chr1	119867021	119867022	rs76858354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP11-418J17.3	rs76858354-C	NR	1E-8		0.0605049	[0.04-0.081] unit increase	Affymetrix [321114] (imputed)	N
1499	chr1	119875729	119875730	rs17023457	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 48)	3,566 European ancestry individuals	4,680 European ancestry individuals	1p12		rs17023457-C	0.178911946	3E-15				Illumina [7417619] (imputed)	N
1499	chr1	119875729	119875730	rs17023457	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p12	NR	rs17023457-?	NR	7E-11				Illumina [at least 7383741] (imputed)	N
1499	chr1	119875729	119875730	rs17023457	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1p12	NR	rs17023457-?	NR	1E-6	(Chinese)	0.07065	[0.042-0.099] unit decrease	Illumina [at least 7383741] (imputed)	N
1499	chr1	119875729	119875730	rs17023457	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Folding of antihelix	4,919 Latin American individuals	NA	1p12	TBX15	rs17023457-C	0.39	1E-11		0.087	unit decrease	Illumina [671038]	N
1499	chr1	119875729	119875730	rs17023457	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	1p12	TBX15	rs17023457-C	0.39	5E-12				Illumina [671038]	N
1499	chr1	119875729	119875730	rs17023457	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Antitragus size	4,919 Latin American individuals	NA	1p12	TBX15	rs17023457-C	0.39	2E-8		0.06	unit decrease	Illumina [671038]	N
1499	chr1	119876723	119876724	rs146061372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs146061372-A	NR	8E-10		0.0386455	[0.026-0.051] unit increase	Affymetrix [321114] (imputed)	N
1499	chr1	119876723	119876724	rs146061372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs146061372-A	NR	2E-9		0.0379521	[0.026-0.05] unit increase	Affymetrix [321169] (imputed)	N
1499	chr1	119876723	119876724	rs146061372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs146061372-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119876723	119876724	rs146061372	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs146061372-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119877218	119877219	rs116473990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs116473990-T	NR	1E-11		0.0715791	[0.051-0.092] unit decrease	Affymetrix [321114] (imputed)	N
1499	chr1	119877218	119877219	rs116473990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs116473990-T	NR	2E-9		0.0637393	[0.043-0.084] unit decrease	Affymetrix [321169] (imputed)	N
1499	chr1	119877218	119877219	rs116473990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1p12	NR	rs116473990-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119877218	119877219	rs116473990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1p12	NR	rs116473990-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1499	chr1	119898664	119898665	rs1325752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs1325752-A	NR	1E-9		0.041745	[0.028-0.055] unit increase	Affymetrix [321114] (imputed)	N
1499	chr1	119898664	119898665	rs1325752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1p12	RP5-834N19.1	rs1325752-A	NR	2E-8		0.038353	[0.025-0.052] unit increase	Affymetrix [321169] (imputed)	N
1499	chr1	119929712	119929713	rs7528838	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	1p12	HAO2	rs7528838-?	NR	4E-19	(alpha-hydroxyisovalerate)	0.57	[NR] unit decrease	Illumina [14760605] (imputed)	N
1499	chr1	119929712	119929713	rs7528838	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	1p12	HAO2	rs7528838-?	NR	1E-14	(2-hydroxy-3-methylvalerate)	0.47	[NR] unit decrease	Illumina [14760605] (imputed)	N
1499	chr1	119929712	119929713	rs7528838	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p12	HAO2	rs7528838-A	0.946998	6E-17	(2-hydroxy-3-methylvalerate)	0.434	[0.33-0.54] unit increase	Illumina [13039987] (imputed)	N
1499	chr1	119929712	119929713	rs7528838	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p12	HAO2	rs7528838-A	0.946998	5E-27	(alpha-hydroxyisovalerate)	0.557	[0.46-0.66] unit increase	Illumina [13039987] (imputed)	N
1500	chr1	119943524	119943525	rs141990161	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1p12	HAO2	rs141990161-T	0.9849	2E-8		0.1328	[0.087-0.179] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1500	chr1	119943524	119943525	rs141990161	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1p12	HAO2	rs141990161-T	0.9849	2E-8		0.132789	[0.087-0.179] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1500	chr1	119952775	119952776	rs12141041	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p12	HAO2	rs12141041-T	0.47	2E-12	(alpha-hydroxyisovalerate)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1500	chr1	119997165	119997166	rs67607949	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	1p12		rs67607949-?	NR	1E-5		0.23	[0.13-0.33] unit increase	Affymetrix [NR] (imputed)	N
1500	chr1	120013322	120013323	rs72693130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1p12	NR	rs72693130-A	0.06263799999999997	3E-8		0.0311903	[0.02-0.043] unit increase	Affymetrix [16580851] (imputed)	N
1500	chr1	120016731	120016732	rs947130	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	17-hydroxyprogesterone (17-OHP) levels	2,220 men	NA	1p12		rs947130-C	NR	1E-10		0.111558	[0.078-0.145] unit increase	Affymetrix [10900000] (imputed)	N
1500	chr1	120017926	120017927	rs7551641	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1p12	HSD3B1, LOC391076, LOC391077, LOC644213	rs7551641-C	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1501	chr1	120160788	120160789	rs3862260	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	1p12	Intergenic	rs3862260-?	0.566	7E-6		1.4285715	[1.23-1.67]	Illumina [580483] (imputed)	N
1501	chr1	120191043	120191044	rs12129705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1p12		rs12129705-?	NR	2E-49				NR [~ 8900000] (imputed)	N
1502	chr1	120195041	120195042	rs454510	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence or chronic alcoholic pancreatitis or alcohol-related liver cirrhosis	1,331 German ancestry alcohol dependence cases, 1,110 German ancestry cases with chronic alcoholic pancreatitis, 400 European ancestry cases with alcohol-related liver cirrhosis, 3,684 German ancestry controls	NA	1p12	ZNF697	rs454510-A	0.02702	3E-6		1.206		Illumina [194024]	N
1502	chr1	120209754	120209755	rs1163251	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1p12	PHGDH	rs1163251-T	0.6	7E-27	(serine)	0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1502	chr1	120228194	120228195	rs12072780	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	1p12	PHGDH	rs12072780-T	0.772	3E-6		0.6092	[0.35-0.86] unit increase	Illumina [9520174] (imputed)	N
1502	chr1	120254505	120254506	rs561931	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	1p12		rs561931-A	0.419038	3E-13		0.0288318	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1502	chr1	120254505	120254506	rs561931	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1p12	PHGDH	rs561931-A	0.360203	3E-20	(serine)	0.214	[0.17-0.26] unit decrease	Illumina [13039987] (imputed)	N
1502	chr1	120254505	120254506	rs561931	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	1p12	PHGDH	rs561931-G	0.593	8E-14		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1502	chr1	120254544	120254545	rs562038	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1p12		rs562038-G	0.32	4E-8		0.06	[0.04-0.09] % increase	Affymetrix [NR] (imputed)	N
1502	chr1	120255125	120255126	rs478093	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	1p12	PHGDH	rs478093-G	0.671738	3E-10		0.056269	[0.039-0.074] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1502	chr1	120255125	120255126	rs478093	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	1p12	PHGDH	rs478093-G	0.671738	2E-6		0.07016	[0.041-0.099] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1502	chr1	120255125	120255126	rs478093	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	1p12	PHGDH	rs478093-G	0.71	2E-14	(serine)			Affymetrix [909508] (imputed)	N
1502	chr1	120255369	120255370	rs11583993	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	1p12	NR	rs11583993-?	NR	1E-12				Affymetrix, Illumina [6211016] (imputed)	N
1502	chr1	120255961	120255962	rs72988658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	1p12	NR	rs72988658-?	NR	1E-6		2.3883	[1.28-3.5] unit increase	Illumina [at least 560000] (imputed)	N
1502	chr1	120257109	120257110	rs637868	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1p12	PHGDH	rs637868-C		4E-7	(AA)	1.5384616	[1.08-2.22]	Affymetrix, Illumina [NR] (imputed)	N
1502	chr1	120257575	120257576	rs477992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1p12		rs477992-G	NR	6E-18		0.0178	[0.014-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1p12	PHGDH	rs477992-G	0.679546	7E-11		0.015285707	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs477992-G	0.73373	2E-26				Affymetrix, Illumina [24332387] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1p12	NR	rs477992-G	0.680113	2E-29		0.022266	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1p12	NR	rs477992-G	0.680077	1E-10		0.012529	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1p12	NR	rs477992-G	0.679903	8E-11		0.013398	[0.0094-0.0174] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1p12	NR	rs477992-G	0.680231	1E-13		0.014601	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1p12	NR	rs477992-G	0.680207	2E-16		0.016302	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1502	chr1	120257575	120257576	rs477992	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1p12	PHGDH	rs477992-A		1E-10		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1502	chr1	120257575	120257576	rs477992	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1p12	PHGDH	rs477992-A	0.3181	2E-8		0.014	[0.0091-0.0189] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1502	chr1	120257575	120257576	rs477992	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	1p12	PHGDH	rs477992-A	0.3081	3E-21	(Serine)	0.0397	[0.031-0.048] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1502	chr1	120257575	120257576	rs477992	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1p12	HMGCS2	rs477992-?	NR	7E-9	(serine)	0.21140407	[0.14-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1502	chr1	120257575	120257576	rs477992	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	1p12	PHGDH	rs477992-A	0.313	3E-14	(serine)	0.051	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1502	chr1	120258969	120258970	rs666930	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	NR	rs666930-C	0.5338	5E-8	(EA)	0.0347	[0.022-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1502	chr1	120258969	120258970	rs666930	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1p12	PHGDH	rs666930-G	0.53	6E-12		1.08		Illumina [161311]	N
1502	chr1	120263656	120263657	rs894079	28459102	Zhang S	2016-04-20	JDR Clin Trans Res	The Novel ASIC2 Locus is Associated with Severe Gingival Inflammation.	Severe gingival inflammation	4,077 European American individuals	NA	1p12	PHGDH	rs894079-?	NR	1E-6		0.48272	[0.29-0.68] unit increase	Affymetrix [2500000] (imputed)	N
1502	chr1	120264572	120264573	rs3790707	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1p12	NR	rs3790707-T	0.02	2E-8		0.0358	[0.023-0.048] unit increase	NR [NR]	N
1502	chr1	120264822	120264823	rs12144094	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1p12	PHGDH	rs12144094-C	0.844	2E-9		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1502	chr1	120265443	120265444	rs532303	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	1p12		rs532303-G	0.685	5E-19				Illumina [7289516] (imputed)	N
1502	chr1	120265443	120265444	rs532303	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	1p12	NR	rs532303-G	0.685	2E-20		0.585	[0.52-0.65]	Illumina [7289516] (imputed)	N
1502	chr1	120265443	120265444	rs532303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs532303-G	0.73306	9E-12				Affymetrix, Illumina [24653286] (imputed)	N
1502	chr1	120265443	120265444	rs532303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs532303-G	0.731244	4E-14				Affymetrix, Illumina [24558453] (imputed)	N
1502	chr1	120266025	120266026	rs115747918	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	1p12	NR	rs115747918-C	0.9566	2E-9		736.608	[496.43-976.79] unit decrease	Affymetrix, Illumina [12990252] (imputed)	N
1502	chr1	120266902	120266903	rs662602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1p12		rs662602-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1502	chr1	120267504	120267505	rs483180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1p12	PHGDH	rs483180-G	0.31958	3E-11		0.015725676	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1502	chr1	120267504	120267505	rs483180	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p12	PHGDH	rs483180-C	NR	1E-17		1.0858942	NR	Affymetrix, Illumina [8278136] (imputed)	N
1502	chr1	120267504	120267505	rs483180	28250457	Scerri TS	2017-02-27	Nat Genet	Genome-wide analyses identify common variants associated with macular telangiectasia type 2.	Macular telangiectasia type 2	476 European ancestry cases, 1,733 European ancestry controls	172 European ancestry cases, 1,134 European ancestry controls	1p12	PHGDH	rs483180-G	0.3046	2E-14		1.67	[1.46-1.90]	Illumina [6310381] (imputed)	N
1502	chr1	120269990	120269991	rs616111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1p12		rs616111-G	NR	3E-9		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1502	chr1	120269990	120269991	rs616111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1p12		rs616111-G	NR	4E-12		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1502	chr1	120269990	120269991	rs616111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1p12	PHGDH	rs616111-G	0.581643	2E-12		0.0159325	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr1	120272476	120272477	rs523395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1p12	PHGDH	rs523395-C	0.531478	3E-22		0.021729432	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr1	120272476	120272477	rs523395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1p12	PHGDH	rs523395-C	0.531476	2E-9		0.013446777	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1502	chr1	120272476	120272477	rs523395	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1p12	PHGDH	rs523395-C	0.5339	2E-9		0.02186835	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1502	chr1	120273908	120273909	rs12094392	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1p12	PHGDH	rs12094392-C	NR	2E-6		1.1760556	NR	Affymetrix, Illumina [8278136] (imputed)	N
1502	chr1	120278071	120278072	rs146953046	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	1p12	PHGDH, HMGCS2	rs146953046-G	0.016	1E-20			NR	Illumina [7289516] (imputed)	N
1502	chr1	120278071	120278072	rs146953046	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	1p12	PHGDH, HMGCS2	rs146953046-G	0.016	8E-22		5.47	[3.87-7.74]	Illumina [7289516] (imputed)	N
1502	chr1	120292289	120292290	rs9943291	29523524	Singh S	2018-03-09	J Am Heart Assoc	Genome Wide Association Study Identifies the HMGCS2 Locus to be Associated With Chlorthalidone Induced Glucose Increase in Hypertensive Patients.	Change in glucose in response to thiazide diuretic treatment in hypertension	135 African American individuals, 175 European ancestry individuals	140 African American individuals, 222 European ancestry individuals	1p12	HMGCS2	rs9943291-G	0.0637	4E-8	(AA)	10.01	[NR] unit increase	Illumina [at least 2500000] (imputed)	N
1503	chr1	120324994	120324995	rs2582783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	1p12		rs2582783-T	0.277375	6E-11		0.030202	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1503	chr1	120326252	120326253	rs150147865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1p12		rs150147865-T	NR	9E-24		0.1163	[0.094-0.139] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1503	chr1	120343102	120343103	rs114755030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	1p12		rs114755030-T	0.031865	2E-9		0.070651	[0.048-0.094] unit decrease	Illumina [13475706] (imputed)	N
1503	chr1	120346775	120346776	rs17024295	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low skeletal muscle mass index	35 Taiwanese ancestry cases, 61 Taiwanese ancestry controls	NA	1p12		rs17024295-?	0.1146	9E-6		7.198		Affymetrix [NR]	N
1503	chr1	120354056	120354062	rs3216034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p12	NR	rs3216034-G	0.15	3E-14	(Regenerating islet-derived protein 4, REG4.11102.22.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1503	chr1	120359285	120359286	rs79795228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1p12	REG4	rs79795228-A	0.015	1E-15	(Regenerating islet-derived protein 4, REG4.11102.22.3)	0.79	[0.59-0.99] unit increase	Affymetrix [10572788] (imputed)	N
1503	chr1	120361175	120361176	rs2994813	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p12	REG4	rs2994813-C	0.77796875	2E-9	(REG4, 11102_22_3)	0.1688953	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1503	chr1	120366054	120366055	rs4659238	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1p12	NR	rs4659238-G	0.8629	2E-16		0.0329	[0.025-0.041] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1503	chr1	120389421	120389422	rs3009190	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1p12	NOTCH2	rs3009190-C	0.75984375	8E-6	(NOTCH2, 8407_84_3)	0.12696664	[0.071-0.183] unit decrease	Illumina [> 1000000] (imputed)	N
1503	chr1	120405230	120405231	rs4261152	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1p12	NR	rs4261152-?	NR	2E-14				Affymetrix, Illumina [6210527] (imputed)	N
1503	chr1	120436750	120436751	rs35273427	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p12	NR	rs35273427-C	0.0602	2E-7	(EA)	0.0707	[0.044-0.098] unit increase	Illumina [~ 11800000] (imputed)	N
1503	chr1	120437883	120437884	rs2641348	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1p12	NOTCH2	rs2641348-G	0.107	2E-8		1.113		Illumina [715631] (imputed)	N
1503	chr1	120437883	120437884	rs2641348	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1p12	NOTCH2	rs2641348-G	0.107	2E-8		1.113		Illumina [715631] (imputed)	N
1503	chr1	120437883	120437884	rs2641348	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	1p12	ADAM30	rs2641348-G	0.123	9E-6		0.051	[0.029-0.073] unit increase	Illumina [at least 81396]	N
1503	chr1	120437883	120437884	rs2641348	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p12	NR	rs2641348-A	0.89	4E-6	(EA)	1.0770205		Affymetrix, Illumina [~ 9000000] (imputed)	N
1503	chr1	120437883	120437884	rs2641348	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1p12	NR	rs2641348-A	0.89	1E-9	(EA)	1.1290045	[1.09-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1503	chr1	120442256	120442257	rs2487569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1p12		rs2487569-T	NR	1E-9		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1503	chr1	120448804	120448805	rs2793827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1p12		rs2793827-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1503	chr1	120451189	120451190	rs3897478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1p12		rs3897478-C	NR	2E-16		0.0283	[0.022-0.035] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1503	chr1	120451189	120451190	rs3897478	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1p12	ADAM30	rs3897478-T	0.891	2E-11		1.161	[1.101-1.224]	Affymetrix, Illumina [1230000] (imputed)	N
1504	chr1	120461252	120461253	rs2793829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	1p12		rs2793829-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1504	chr1	120463016	120463017	rs587778576	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	1p12		rs587778576-?	NR	2E-20		1.03677	[0.81-1.26] unit decrease	NR [9800000] (imputed)	N
1504	chr1	120463229	120463230	rs835574	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p12		rs835574-T	0.7287	2E-7		0.0565	[0.035-0.078] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1504	chr1	120463229	120463230	rs835574	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs835574-T	0.2029	3E-77		0.2477	[0.22-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1504	chr1	120463229	120463230	rs835574	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs835574-T	0.125241	4E-31				Affymetrix, Illumina [24649327] (imputed)	N
1504	chr1	120464164	120464165	rs835573	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1p12	NOTCH2	rs835573-?	NR	2E-7		1.13	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
1504	chr1	120471223	120471224	rs2493394	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1p12	NOTCH2	rs2493394-G	0.107337868211843	1E-10		0.073	[0.051-0.095] unit increase	NR [5035015] (imputed)	N
1504	chr1	120485334	120485335	rs6697258	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	1p12	NR	rs6697258-?	NR	2E-15	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1504	chr1	120499572	120499573	rs2453051	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1p12	NR	rs2453051-C	0.1522	1E-23		0.0609	[0.049-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1504	chr1	120500639	120500640	rs57257204	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	1p12	NOTCH2	rs57257204-?	NR	6E-7	(HIS)	93.2	[56.74-129.66] unit increase	Illumina [377173]	N
1504	chr1	120505531	120505532	rs1493696	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1p12	NOTCH2	rs1493696-A	0.13231	8E-9		0.12832591	[0.085-0.172] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1504	chr1	120505995	120505996	rs10923929	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs10923929-C	0.805	6E-39		0.2566	[0.22-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1504	chr1	120505995	120505996	rs10923929	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1p12	NR	rs10923929-?	NR	9E-37		0.03891657	[0.033-0.045] unit increase	Illumina [30613845] (imputed)	N
1504	chr1	120517958	120517959	rs10923931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1p12	NR	rs10923931-T	NR	1E-15		0.0302	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1504	chr1	120517958	120517959	rs10923931	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1p12	intergenic	rs10923931-T	0.1093	1E-6	(EA)	0.0769	[0.046-0.108] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1504	chr1	120517958	120517959	rs10923931	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	1p12	NOTCH2, ADAM30	rs10923931-T	0.11	4E-8		1.13	[1.08-1.17]	Affymetrix, Illumina [2202892] (imputed)	N
1504	chr1	120526981	120526982	rs1493694	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1p12	NR	rs1493694-C	0.8928	7E-22		0.0705	[0.056-0.085] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1504	chr1	120526981	120526982	rs1493694	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1p12	NOTCH2	rs1493694-T	0.1089	3E-16		1.09	[1.07-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1504	chr1	120528931	120528932	rs2453042	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1p12	NOTCH2	rs2453042-G	0.84903	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1504	chr1	120528931	120528932	rs2453042	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1p12	NOTCH2	rs2453042-?	NR	7E-6		1.16	[1.09-1.24]	Illumina [at least 5000000] (imputed)	N
1504	chr1	120550700	120550701	rs327200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs327200-G	0.112184	8E-11				Affymetrix, Illumina [23472807] (imputed)	N
1504	chr1	120554133	120554134	rs41463147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1p12		rs41463147-G	NR	1E-9		0.083	[0.056-0.11] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1504	chr1	120581670	120581670	rs200368423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1p12	NR	rs200368423-I	0.090933	4E-11		0.025029	[0.018-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1505	chr1	120591250	120591251	rs72697266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1p12	NR	rs72697266-A	NR	3E-9		0.0259	[0.017-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1505	chr1	120641968	120641969	rs2603961	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs2603961-T	0.3762	2E-29		0.2036	[0.17-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1505	chr1	120641968	120641969	rs2603961	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p12		rs2603961-T	0.8678	1E-8		0.0846	[0.055-0.114] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1505	chr1	120641968	120641969	rs2603961	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs2603961-T	0.3898	4E-57		0.1963	[0.17-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1505	chr1	120646812	120646813	rs12124727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p12	NR	rs12124727-C	0.661709	4E-13				Affymetrix, Illumina [19872809] (imputed)	N
1505	chr1	120652157	120652158	rs2793925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1p12		rs2793925-A	0.684361	4E-12		0.016860634	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1505	chr1	120652157	120652158	rs2793925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1p12		rs2793925-A	0.684354	3E-11		0.01610667	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1505	chr1	120652157	120652158	rs2793925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1p12	NR	rs2793925-A	0.684499	8E-14		0.016722	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1506	chr1	120809674	120809675	rs587606498	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1p11.2	NR	rs587606498-?	NR	5E-6		7.086	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1509	chr1	121200489	121200490	rs6600671	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	1p11.2	intergenic	rs6600671-?	NR	6E-7	(NeckZ1rf)			Affymetrix [70897]	N
1510	chr1	121280612	121280613	rs11249433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	1p11.2		rs11249433-G	NR	9E-13		0.0825	[0.06-0.105] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	1p11.2		rs11249433-?	NR	5E-8		1.08184	[1.05-1.11]	NR [682398]	N
1510	chr1	121280612	121280613	rs11249433	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	1p11.2		rs11249433-G	NR	8E-9		1.0668942	NR	Affymetrix [7846216] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1p11.2		rs11249433-A	NR	8E-54		0.91	[0.89-0.92]	Affymetrix, Illumina [NR] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1p11.2	EMBP1	rs11249433-G	0.41	2E-52	(EA)	1.11	[1.09-1.13] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1p11.2	NR	rs11249433-G	0.4	4E-20		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1p11.2	NR	rs11249433-G	0.4	3E-27		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	1p11.2	intergenic	rs11249433-G	0.4	2E-26		1.09	[1.07-1.11]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1510	chr1	121280612	121280613	rs11249433	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	1p11.2	intergenic	rs11249433-C	0.39	7E-10		1.16	[1.09-1.24] (Het)	Illumina [528173]	N
1510	chr1	121371715	121371716	rs201338907	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		1p11.2	intergenic	rs201338907-G	0.0217147	1E-6		1.72877	[1.04-2.42] unit increase	Illumina [640625] (imputed)	N
1511	chr1	121403235	121403236	rs141625685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1p11.2	NR	rs141625685-C	0.756915	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
1511	chr1	121430081	121430082	rs35861321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1p11.2	NR	rs35861321-A	0.843175	3E-9		0.163075	[0.11-0.22] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1511	chr1	121472040	121472041	rs587635492	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p11.1		rs587635492-A	0.6398	3E-39		0.1735	[0.15-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1672	chr1	142537624	142537626	rs1371146120	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA			rs1371146120-A	0.1466	1E-8		3.692		Illumina [7608150]	N
1672	chr1	142537932	142537933	rs10453900	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA			rs10453900-A	NR	8E-6		4.4607115	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1673	chr1	142609083	142609084	rs560087416	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA			rs560087416-T	0.9582	8E-17		0.4274	[0.33-0.53] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1678	chr1	143291127	143291128	rs190817902	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls		NR	rs190817902-G	0.055	7E-7	(EA)	0.1165	[0.07-0.163] unit increase	Illumina [~ 11800000] (imputed)	N
1680	chr1	143538177	143538178	rs9659328	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA		NR	rs9659328-G	0.091282	1E-12		0.302203	[0.22-0.39] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1687	chr1	144451836	144451837	rs28971169	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA			rs28971169-T	0.5792	4E-9		0.1989	[0.13-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1687	chr1	144451836	144451837	rs28971169	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA			rs28971169-T	0.8867	3E-6		0.1178	[0.069-0.167] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1687	chr1	144451836	144451837	rs28971169	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA			rs28971169-T	0.5716	4E-32		0.2276	[0.19-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1687	chr1	144451836	144451837	rs28971169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA		NR	rs28971169-T	0.750525	4E-13		0.181745	[0.13-0.23] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1688	chr1	144577328	144577329	rs61803822	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1p12		rs61803822-T	0.8717	8E-7		0.106	[0.064-0.148] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1688	chr1	144577328	144577329	rs61803822	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1p12		rs61803822-T	0.5252	3E-35		0.2195	[0.18-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1689	chr1	144816304	144816305	rs320826	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1p11.2	NBPF9	rs320826-C	0.4954	6E-12		0.0154	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1690	chr1	144873326	144873327	rs4124921	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.2	NR	rs4124921-?	NR	1E-7				Affymetrix [NR]	N
1690	chr1	144874814	144874815	rs1778155	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	1q21.2	PDE4DIP	rs1778155-T	0.454	1E-11		2.032	[1.82-2.24]	Illumina [281811]	N
1690	chr1	144874814	144874815	rs1778155	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	1q21.2	PDE4DIP	rs1778155-T	0.454	8E-8		1.965	[1.71-2.22]	Illumina [281811]	N
1690	chr1	144897875	144897876	rs112427713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q21.2		rs112427713-T	NR	3E-9		0.0173	[0.012-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1690	chr1	144897875	144897876	rs112427713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.2		rs112427713-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1690	chr1	144936352	144936353	rs2477088	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	1q21.2	PDE4DIP	rs2477088-T	0.32	6E-10		2.5	[1.87-3.34]	Illumina [5378539] (imputed)	N
1690	chr1	144954850	144954851	rs682536	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1q21.2	NR	rs682536-?	NR	1E-14		7.73	NR z score decrease	Illumina [at least 830937] (imputed)	N
1691	chr1	144992180	144992181	rs2863344	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	1q21.2	PDE4DIP	rs2863344-?	NR	2E-6				NR [~ 2000000]	N
1692	chr1	145099902	145099902	rs112349824	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals			SEC22B	rs112349824-TA	0.558734	4E-6		0.629542	[0.37-0.89] unit increase	Illumina [640625] (imputed)	N
1692	chr1	145114539	145114540	rs587616006	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.1		rs587616006-T	0.9893	3E-9		0.4965	[0.33-0.66] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1693	chr1	145328112	145328113	rs143868089	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.1		rs143868089-T	0.3664	2E-13		0.1399	[0.1-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1694	chr1	145389964	145389965	rs115242021	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	1q21.1	NR	rs115242021-C	NR	5E-7		0.2326	[0.15-0.31] SD units decrease	NR [10700000] (imputed)	N
1694	chr1	145396839	145396840	rs71582797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q21.1		rs71582797-T	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1694	chr1	145471190	145471191	rs704984	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.1		rs704984-T	0.6665	1E-29		0.1906	[0.16-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1694	chr1	145471190	145471191	rs704984	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.1		rs704984-T	0.662	1E-53		0.1785	[0.16-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1694	chr1	145471190	145471191	rs704984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.1	NR	rs704984-T	0.90772	7E-16				Affymetrix, Illumina [23114412] (imputed)	N
1694	chr1	145471190	145471191	rs704984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.1	NR	rs704984-G	0.658619	2E-19		0.124743	[0.098-0.152] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1695	chr1	145503909	145503910	rs79186011	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	1q21.1	NR	rs79186011-C	NR	5E-6		0.208	[0.13-0.28] SD units decrease	NR [10700000] (imputed)	N
1695	chr1	145507252	145507253	rs4970850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs4970850-G	NR	1E-12		0.0377	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1695	chr1	145507645	145507646	rs139428292	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q21.1	NBPF20	rs139428292-A	0.0266	5E-8		0.072898	[0.047-0.099] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1695	chr1	145515286	145515287	rs41302087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs41302087-C	NR	4E-24		0.0625	[0.05-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1695	chr1	145517062	145517063	rs10910821	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOTCH2	5,360 Icelandic ancestry individuals	NA	1q21.1		rs10910821-G	0.03704	8E-55		0.738763	[0.65-0.83] unit increase	Illumina [7506463] (imputed)	N
1695	chr1	145529680	145529681	rs6424378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.1	NR	rs6424378-C	0.780415	7E-15				Affymetrix, Illumina [24649327] (imputed)	N
1695	chr1	145529680	145529681	rs6424378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.1	NR	rs6424378-T	0.736181	1E-17		0.126224	[0.097-0.155] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1695	chr1	145536715	145536716	rs185073199	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q21.1	ITGA10	rs185073199-T	0.989733	3E-10		0.0637345	[0.044-0.083] unit decrease	Affymetrix [NR] (imputed)	N
1695	chr1	145536715	145536716	rs185073199	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q21.1	ITGA10	rs185073199-T	0.989735	5E-10		0.0646972	[0.044-0.085] unit decrease	Affymetrix [NR] (imputed)	N
1695	chr1	145562292	145562293	rs11579366	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.1	NR	rs11579366-G	0.8082	5E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1695	chr1	145562292	145562293	rs11579366	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1q21.1	NR	rs11579366-?	NR	4E-9				Affymetrix, Illumina [6210527] (imputed)	N
1695	chr1	145592261	145592261	rs11370032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA			rs11370032-CT	0.0963	7E-6		0.0828	[0.047-0.119] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1695	chr1	145592261	145592261	rs11370032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA			rs11370032-CT	0.356	5E-25		0.1283	[0.1-0.15] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1695	chr1	145603358	145603359	rs72701898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs72701898-C	NR	6E-17		0.0303	[0.023-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1695	chr1	145614467	145614468	rs61816194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q21.1	Intergenic	rs61816194-T	0.3372	4E-8	(MTAG)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1695	chr1	145614467	145614468	rs61816194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q21.1	Intergenic	rs61816194-T	0.3379	1E-8	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr1	145630110	145630111	rs75246752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q21.1		rs75246752-C	NR	2E-8		0.0564	[0.037-0.076] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1696	chr1	145630110	145630111	rs75246752	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q21.1	RNF115	rs75246752-G	0.987103	6E-9		0.0490747	[0.033-0.066] unit decrease	Affymetrix [NR] (imputed)	N
1696	chr1	145630110	145630111	rs75246752	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q21.1	RNF115	rs75246752-G	0.987126	1E-8		0.0496485	[0.033-0.067] unit decrease	Affymetrix [NR] (imputed)	N
1696	chr1	145639730	145639731	rs141084774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q21.1	RNF115	rs141084774-A	0.014139	4E-9		0.059859615	[0.04-0.08] unit increase	Affymetrix [93095623] (imputed)	N
1696	chr1	145644983	145644984	rs12405132	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1q21.1		rs12405132-T	NR	5E-9		0.96	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1696	chr1	145644983	145644984	rs12405132	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.1	RNF115	rs12405132-C	0.63	6E-10	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1696	chr1	145644983	145644984	rs12405132	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1q21.1	LOC10028814, NBPF10, RNF115	rs12405132-C	0.64	2E-7		1.0526316		Affymetrix, Illumina [~ 14000000] (imputed)	N
1696	chr1	145644983	145644984	rs12405132	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1q21.1	LOC10028814, NBPF10, RNF115	rs12405132-C	0.64	8E-9		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1696	chr1	145645605	145645606	rs12744221	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	1q21.1	NR	rs12744221-C	0.65	6E-6		1.66	[NR]	Illumina [6923995] (imputed)	N
1696	chr1	145646644	145646645	rs10910836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q21.1	NR	rs10910836-A	0.223811	1E-10		0.014137	[0.0098-0.0184] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1696	chr1	145671121	145671122	rs142882762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q21.1		rs142882762-C	NR	2E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1696	chr1	145690471	145690472	rs12123298	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q21.1	NBPF20	rs12123298-T	0.0719	9E-15	(East Asian)	0.092	[0.069-0.115] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1696	chr1	145690471	145690472	rs12123298	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	1q21.1	NBPF10, NBPF20	rs12123298-?	NR	5E-14		0.06621	[0.049-0.083] unit decrease novel	Illumina [6108953] (imputed)	N
1696	chr1	145704758	145704759	rs1552172	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.1	NR	rs1552172-A	0.3563	1E-8	(EA)	0.0382	[0.025-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
1696	chr1	145713070	145713071	rs35880546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	1q21.1		rs35880546-C	0.082648	2E-15		0.0509988	[0.038-0.064] unit decrease	Illumina [13475706] (imputed)	N
1696	chr1	145713304	145713305	rs72704264	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q21.1	CD160	rs72704264-C	0.2138	4E-10		0.1173	[0.08-0.154] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1696	chr1	145723119	145723120	rs10910845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q21.1		rs10910845-C	NR	4E-101		0.0415	[0.038-0.045] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1696	chr1	145723119	145723120	rs10910845	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q21.1	NBPF20, PDZK1	rs10910845-A	0.5386	1E-69		0.0604	[0.054-0.067] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1696	chr1	145723119	145723120	rs10910845	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q21.1	NBPF20	rs10910845-A	0.4692	2E-51		0.057964	[0.05-0.065] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1696	chr1	145723119	145723120	rs10910845	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q21.1	NR	rs10910845-A	0.4653	1E-18	(women)	0.0444	[0.034-0.054] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1696	chr1	145723119	145723120	rs10910845	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q21.1	NR	rs10910845-A	0.4409	6E-32	(men)	0.0678	[0.056-0.079] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1696	chr1	145723644	145723645	rs1967017	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	1q21.1	PDZK1	rs1967017-T	0.46	5E-21		1.2	[1.16-1.25]	Affymetrix [710030]	N
1696	chr1	145723644	145723645	rs1967017	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1q21.1	PDZK1	rs1967017-C	0.53	5E-9		0.065	[0.043-0.087] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1696	chr1	145723644	145723645	rs1967017	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	1q21.1	PDZK1	rs1967017-T	0.47	4E-8	(Urate)	3.33	[2.15-4.51] umol/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q21.1	NR	rs1471633-A	0.46	7E-114		0.0413	[0.038-0.045] unit increase	NR [NR]	N
1696	chr1	145723738	145723739	rs1471633	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	1q21.1	PDZK1	rs1471633-A		9E-29		0.06	[0.05-0.07] mg/dl increase	NR [NR] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	1q21.1	NBPF10, NBPF19, NBPF20	rs1471633-A	0.9161	6E-14	(Japanese)	0.0533	[0.039-0.067] unit increase	Illumina [1986983] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	1q21.1	NBPF10, NBPF19, NBPF20	rs1471633-A	0.467	1E-29	(EA)	0.043571427	[0.036-0.051] unit increase	Illumina [1986983] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	1q21.1	NBPF10, NBPF19, NBPF20	rs1471633-A	0.9161	6E-14	(Japanese)	0.0533	[0.039-0.067] unit increase	Illumina [5864938] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1q21.1	PDZK1	rs1471633-C	0.53	2E-6	(men)	0.068	[0.041-0.095] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1696	chr1	145723738	145723739	rs1471633	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q21.1	PDZK1	rs1471633-A	0.46	1E-29		0.059	[0.049-0.069] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1696	chr1	145725416	145725417	rs74119445	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q21.1	NBPF20	rs74119445-T	0.0996	8E-11	(AA)	0.1527	[0.11-0.2] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1696	chr1	145725688	145725689	rs12129861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs12129861-A	NR	1E-63		0.0401	[0.035-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr1	145725688	145725689	rs12129861	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	1q21.1	PDZK1	rs12129861-A	0.46	3E-9		0.06	[0.042-0.083] mg/dl decrease	Affymetrix, Illumina [2493963] (imputed)	N
1696	chr1	145727682	145727683	rs1797052	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	1q21.1	PDZK1	rs1797052-T	0.18	6E-7		1.24	[1.14-1.35]	Illumina [7206774] (imputed)	N
1696	chr1	145727682	145727683	rs1797052	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	1q21.1	PDZK1	rs1797052-T	0.185	3E-15	(Japanese)	0.041	[0.031-0.051] unit increase	Illumina [5864938] (imputed)	N
1696	chr1	145727682	145727683	rs1797052	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	1q21.1	NR	rs1797052-?	NR	9E-13		0.03865	[0.028-0.049] unit increase novel	Illumina [6108953] (imputed)	N
1696	chr1	145727682	145727683	rs1797052	24152035	Goodbourn PT	2013-10-23	Genes Brain Behav	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	NA	1q21.1	PDZK1	rs1797052-?	0.0547	8E-9		5.72	[NR] unit increase	Illumina [642758]	N
1696	chr1	145736651	145736652	rs72704275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs72704275-A	NR	5E-13		0.0288	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1696	chr1	145740513	145740514	rs72704277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs72704277-C	NR	2E-10		0.0278	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1696	chr1	145747064	145747065	rs191362962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.1	NR	rs191362962-T	NR	6E-13		0.6878	[0.5-0.87] unit decrease	Affymetrix [9000000] (imputed)	N
1697	chr1	145827723	145827724	rs368032757	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.1	NR	rs368032757-G	0.0183	5E-6	(EA)	0.1759	[0.1-0.25] unit increase	Illumina [~ 11800000] (imputed)	N
1702	chr1	146494026	146494027	rs12724426	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q21.1	LOC728989	rs12724426-A	0.21	3E-8	(EA)	36.75	[23.76-49.74] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1702	chr1	146504082	146504083	rs11240095	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.1	NR	rs11240095-?	NR	2E-8				Affymetrix [NR]	N
1702	chr1	146508933	146508934	rs12122100	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1q21.1	NR	rs12122100-?	NR	1E-6	(progression)			Illumina [NR]	N
1703	chr1	146560563	146560564	rs11239930	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	1q21.1	NBPF14	rs11239930-?	0.58	2E-6		1.47	[NR]	Affymetrix [700022]	N
1703	chr1	146568954	146568955	rs11239931	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.1	NR	rs11239931-G	0.7468	4E-12		0.0229	[0.016-0.029] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1703	chr1	146568954	146568955	rs11239931	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1q21.1	NR	rs11239931-?	NR	4E-10				Affymetrix, Illumina [6210527] (imputed)	N
1703	chr1	146585619	146585620	rs12142743	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	1q21.1	NR	rs12142743-G	0.89	1E-5	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1703	chr1	146589300	146589301	rs188456167	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC241584.2	rs188456167-?	NR	4E-12	(female)	0.619033	[NR] unit increase	Affymetrix [NR] (imputed)	N
1703	chr1	146606059	146606059	rs76754787	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Retinopathy x type 2 diabetes interaction	13,881 European ancestry cases, 123,538 European ancestry controls	NA	1q21.1	GJA8	rs76754787-AT	0.03	1E-11				Affymetrix [at least 723305] (imputed)	N
1704	chr1	146692173	146692174	rs10900325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q21.1		rs10900325-C	NR	9E-12		0.0557	[0.04-0.072] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1704	chr1	146693228	146693229	rs2354432	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	1q21.1	FMO5	rs2354432-?	NR	6E-6			[NR]	Illumina [283437]	N
1704	chr1	146716352	146716353	rs375391544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q21.1		rs375391544-C	NR	9E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1704	chr1	146723213	146723214	rs190300405	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC242426.2	rs190300405-?	NR	3E-13	(female)	0.634045	[NR] unit increase	Affymetrix [NR] (imputed)	N
1704	chr1	146740575	146740576	rs11576360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.1		rs11576360-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1704	chr1	146751269	146751270	rs192401631	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CHD1L	rs192401631-?	NR	2E-12	(female)	0.665165	[NR] unit increase	Affymetrix [NR] (imputed)	N
1704	chr1	146800106	146800107	rs10900347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q21.1		rs10900347-C	NR	1E-17		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1705	chr1	146810797	146810798	rs12032578	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	1q21.1	LINC00624	rs12032578-C	0.088	3E-7		1.44	[1.25-1.66]	Illumina [1438399] (imputed)	N
1705	chr1	146813357	146813358	rs2353984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q21.1		rs2353984-T	0.781626	6E-10		0.0149402	[0.01-0.02] unit increase	Illumina [13479295] (imputed)	N
1705	chr1	146813357	146813358	rs2353984	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.1	CHD1L, LINC00624	rs2353984-?	NR	4E-12		0.023700466	[0.017-0.03] unit increase	Illumina [27896057] (imputed)	N
1705	chr1	146854835	146854836	rs4950322	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.1	CHD1L	rs4950322-?	0.21	7E-7	(Hgb)			Illumina [496032]	N
1705	chr1	146854835	146854836	rs4950322	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.1	CHD1L	rs4950322-?	0.21	2E-7	(Resistin)			Illumina [496032]	N
1705	chr1	146872841	146872842	rs189176971	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00624	rs189176971-?	NR	8E-13	(female)	0.665074	[NR] unit increase	Affymetrix [NR] (imputed)	N
1706	chr1	146941582	146941583	rs145932848	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q21.1	LINC00624	rs145932848-A	0.0181	2E-7		0.1835	[0.11-0.25] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1706	chr1	146955264	146955265	rs141976661	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1q21.1	Intergenic	rs141976661-A	0.997	5E-7	(liability model)	0.88	[0.55-1.21] unit decrease	NR [19725427] (imputed)	N
1706	chr1	146979515	146979516	rs631288	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q21.2	NR	rs631288-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1706	chr1	146985744	146985745	rs12057959	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	1q21.2	NR	rs12057959-?		3E-6				Illumina [892589]	N
1706	chr1	146996479	146996480	rs11240074	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	1q21.2	BCL9, CHD1L	rs11240074-?	NR	6E-6		0.21	[0.11-0.31] unit increase	Illumina [1075436] (imputed)	N
1706	chr1	146997591	146997592	rs34710727	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	1q21.2		rs34710727-?	NR	4E-6				Illumina [7401356] (imputed)	N
1706	chr1	146997591	146997592	rs34710727	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	1q21.2	LINC00624	rs34710727-?	NR	1E-6				Illumina [7401356] (imputed)	N
1706	chr1	146997591	146997592	rs34710727	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	1q21.2	LINC00624	rs34710727-?	NR	3E-7				Illumina [7401356] (imputed)	N
1706	chr1	147020455	147020456	rs594206	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	1q21.2	BCL9	rs594206-A	0.78	6E-7	(Dominant)	36.3	[4.58-287]	Illumina [555600]	N
1706	chr1	147030456	147030457	rs1546161	34270794	Watts K	2021-07-16	Int J Cancer	Genome-wide association studies of toxicity to oxaliplatin and fluoropyrimidine chemotherapy with or without cetuximab in 1800 patients with advanced colorectal cancer.	Adverse response to chemotherapy in colorectal cancer (FOLFOX) (Hand foot syndrome)	385 European ancestry individuals	NA	1q21.2		rs1546161-?		6E-6		17.8	[5.1-62]	NR [3841701] (imputed)	N
1706	chr1	147050815	147050816	rs142315514	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q21.2	BCL9	rs142315514-C	0.964594	2E-8		0.0213869	[0.014-0.029] unit decrease	Affymetrix [12370749]	N
1706	chr1	147052799	147052800	rs57188402	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.2		rs57188402-A	0.9415	1E-8		0.1217	[0.08-0.164] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1706	chr1	147060090	147060091	rs6695965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.2		rs6695965-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1706	chr1	147060513	147060514	rs11240089	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q21.2	NR	rs11240089-?	NR	2E-27		0.02874501	[0.024-0.034] unit increase	Illumina [30613845] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs11240092-A	0.7833	6E-37		0.2424	[0.2-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs11240092-A	0.771	1E-74		0.2355	[0.21-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs11240092-A	0.796311	5E-26				Affymetrix, Illumina [24649327] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.2	NR	rs11240092-G	0.776418	3E-28		0.176612	[0.15-0.21] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs11240092-A	0.819349	5E-32				Affymetrix, Illumina [23114412] (imputed)	N
1707	chr1	147071307	147071308	rs11240092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.2	NR	rs11240092-G	0.788472	8E-36		0.214366	[0.18-0.25] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1707	chr1	147077014	147077015	rs79128089	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1q21.2	BCL9	rs79128089-?	NR	3E-8	(AA)	0.108	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1707	chr1	147083113	147083114	rs583583	23382809	Xu C	2013-01-29	PLoS One	BCL9 and C9orf5 are associated with negative symptoms in schizophrenia: meta-analysis of two genome-wide association studies.	Schizophrenia (negative symptoms)	1,774 European ancestry cases, 2,726 European ancestry controls		1q21.2	BCL9	rs583583-A	0.28	6E-7		1.3	[NR]	Affymetrix [729454]	N
1707	chr1	147086966	147086967	rs6675828	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	1q21.2	NR	rs6675828-A	0.296	7E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	5.457	[NR]	Affymetrix [> 650000] (imputed)	N
1707	chr1	147087720	147087721	rs3737843	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.2	NR	rs3737843-T	0.9106	4E-11		0.0323	[0.023-0.042] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1707	chr1	147120999	147121000	rs79489938	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q21.2	NR	rs79489938-G	0.986	5E-8		0.1131	[0.073-0.154] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1707	chr1	147124309	147124310	rs2153463	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	ACP6	rs2153463-G	0.73859375	2E-312	(ACP6, 5742_14_3)	0.94446826	[0.9-0.99] unit increase	Illumina [> 1000000] (imputed)	N
1707	chr1	147126436	147126437	rs140566115	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP6	5,363 Icelandic ancestry individuals	NA	1q21.2		rs140566115-A	0.02449	2E-144		1.44247	[1.33-1.55] unit decrease	Illumina [7506463] (imputed)	N
1707	chr1	147128727	147128728	rs75583687	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP6	5,363 Icelandic ancestry individuals	NA	1q21.2		rs75583687-C	0.02661	7E-171		1.52175	[1.41-1.63] unit decrease	Illumina [7506463] (imputed)	N
1708	chr1	147205769	147205770	rs6593803	28500057	Bluett J	2017-05-12	Ann Rheum Dis	HLA-A 31:01 is not associated with the development of methotrexate pneumonitis in the UK population: results from a genome-wide association study.	Methotrexate-induced interstitial lung disease in rheumatoid arthritis	62 European ancestry cases, 175 European ancestry controls	NA	1q21.2	GJA5, ACP6	rs6593803-?		2E-7		3.13	[NR]	Illumina [NR]	N
1708	chr1	147226261	147226262	rs12724666	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1q21.2	PDZK1P1	rs12724666-A	NR	9E-8	(WAP, All)	1.1	[0.71-1.49] unit increase	Illumina [7600000] (imputed)	N
1708	chr1	147226790	147226791	rs1891498	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	1q21.2	GJA5	rs1891498-?	NR	9E-6	(Digit Span Forward)			Illumina [up to 563855]	N
1708	chr1	147232739	147232740	rs10465885	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q21.2	GJA5	rs10465885-C	0.472	1E-10		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1708	chr1	147240306	147240307	rs10793705	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to antidepressants (pain relief efficacy)	66 Japanese ancestry individuals	NA	1q21.2	NR	rs10793705-?	NR	2E-6				Illumina [445723]	N
1708	chr1	147255830	147255831	rs79187193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q21.2		rs79187193-A	NR	8E-9		0.136	[0.09-0.182] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1708	chr1	147255830	147255831	rs79187193	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q21.2	GJA5	rs79187193-G	0.943	3E-14		1.12	[1.09-1.16]	Illumina [34740186] (imputed)	N
1708	chr1	147255830	147255831	rs79187193	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.2	GJA5	rs79187193-G	0.95	8E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1708	chr1	147255830	147255831	rs79187193	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.2	GJA5	rs79187193-G	0.95	2E-10	(EA)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1708	chr1	147264009	147264010	rs138087311	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1q21.2	GJA5, GJA8	rs138087311-C	0.02	3E-7	(African American)	1.02	[0.63-1.41] unit increase	Illumina [up to 13042663] (imputed)	N
1708	chr1	147281348	147281349	rs1692144	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q21.2	GJA5	rs1692144-C	0.79	2E-16		0.65	[0.49-0.81] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1708	chr1	147281348	147281349	rs1692144	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q21.2	GJA5	rs1692144-C	0.791	4E-15		0.6416	[0.48-0.8] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1708	chr1	147283806	147283807	rs12072205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q21.2		rs12072205-T	NR	3E-16		0.0214	[0.016-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1708	chr1	147283806	147283807	rs12072205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q21.2		rs12072205-T	0.155912	3E-18		0.02643954	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1708	chr1	147285006	147285007	rs12076930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs12076930-C	0.131198	6E-24				Affymetrix, Illumina [24332387] (imputed)	N
1708	chr1	147285006	147285007	rs12076930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q21.2	NR	rs12076930-C	0.153738	3E-25		0.026364	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1708	chr1	147287991	147287992	rs1086605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q21.2		rs1086605-T	0.156038	5E-20		0.027863681	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1708	chr1	147287991	147287992	rs1086605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs1086605-T	0.135838	1E-23				Affymetrix, Illumina [24653286] (imputed)	N
1708	chr1	147287991	147287992	rs1086605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q21.2	NR	rs1086605-T	0.153875	2E-24		0.025848	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1708	chr1	147287991	147287992	rs1086605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs1086605-T	0.136158	1E-28				Affymetrix, Illumina [24558453] (imputed)	N
1708	chr1	147287991	147287992	rs1086605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q21.2	NR	rs1086605-T	0.153863	3E-29		0.028565	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1708	chr1	147288275	147288276	rs1086603	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.2	NR	rs1086603-?	NR	8E-9				Affymetrix [NR]	N
1708	chr1	147289583	147289583	rs201773321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q21.2		rs201773321-GT	NR	1E-16		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1708	chr1	147289583	147289583	rs201773321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q21.2		rs201773321-GT	0.155874	1E-21		0.029128157	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1708	chr1	147290789	147290790	rs12126043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q21.2		rs12126043-A	NR	2E-17		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1708	chr1	147290789	147290790	rs12126043	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q21.2	intergenic	rs12126043-A		1E-13		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1708	chr1	147290789	147290790	rs12126043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q21.2		rs12126043-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1708	chr1	147309665	147309666	rs114877749	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.2	NR	rs114877749-T	NR	4E-9		0.0559	[0.037-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1709	chr1	147345230	147345231	rs138030384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q21.2		rs138030384-C	NR	7E-10		0.2112	[0.14-0.28] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1709	chr1	147380120	147380121	rs149980128	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	1q21.2		rs149980128-?	NR	1E-17		0.510839	[0.39-0.63] unit decrease	NR [9800000] (imputed)	N
1709	chr1	147381557	147381558	rs2132397	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs2132397-A	0.4917	6E-23		0.1827	[0.15-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1709	chr1	147381557	147381558	rs2132397	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.2		rs2132397-A	0.1166	2E-8		0.0978	[0.064-0.132] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1709	chr1	147381557	147381558	rs2132397	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs2132397-A	0.4864	6E-44		0.1765	[0.15-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1712	chr1	147744071	147744072	rs140885868	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC01731	rs140885868-?	NR	4E-9	(male)	0.722582	[NR] unit increase	Affymetrix [NR] (imputed)	N
1712	chr1	147817110	147817111	rs115353386	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC01138	rs115353386-?	NR	1E-9	(male)	0.750836	[NR] unit increase	Affymetrix [NR] (imputed)	N
1719	chr1	148644407	148644408	rs594576	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.1		rs594576-A	0.1104	2E-47		0.3598	[0.31-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1719	chr1	148756829	148756830	rs587630730	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA			rs587630730-T	0.7724	2E-29		0.2653	[0.22-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1719	chr1	148756829	148756830	rs587630730	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA			rs587630730-T	0.7587	2E-53		0.2455	[0.21-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1722	chr1	149090594	149090595	rs188069315	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q21.1	NR	rs188069315-a	0.0015	5E-9		2.36	[1.77-3.15]	Affymetrix, Illumina [16201029] (imputed)	N
1723	chr1	149217803	149217804	rs116399066	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	1q21.1	NR	rs116399066-?	NR	1E-6		6.39	NR	Affymetrix [~ 18000000] (imputed)	N
1727	chr1	149738589	149738590	rs150145799	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q21.2		rs150145799-C	0.13386	3E-83		0.7181	[0.65-0.79] unit increase	Illumina [18215199] (imputed)	N
1727	chr1	149738589	149738590	rs150145799	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q21.2		rs150145799-C	0.13386	4E-15		0.2881	[0.22-0.36] unit increase	Illumina [18215199] (imputed)	N
1727	chr1	149738589	149738590	rs150145799	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16+ monocyte	3,614 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q21.2		rs150145799-C	0.13401	2E-14		0.2869	[0.21-0.36] unit increase	Illumina [18208887] (imputed)	N
1727	chr1	149738589	149738590	rs150145799	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16- monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q21.2		rs150145799-C	0.13386	9E-99		0.7751	[0.71-0.84] unit increase	Illumina [18215199] (imputed)	N
1727	chr1	149738589	149738590	rs150145799	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16+ monocyte	3,611 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q21.2		rs150145799-C	0.13398	7E-58		0.5924	[0.52-0.66] unit increase	Illumina [18210047] (imputed)	N
1727	chr1	149759625	149759626	rs587626837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q21.2	RP11-196G18.3	rs587626837-C	0.0882	7E-13		0.028344566	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1727	chr1	149765283	149765292	rs201166461	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.2	NR	rs201166461-?	NR	7E-11	(IL6RA)	0.82243	[0.58-1.07] unit increase	Illumina [11901634] (imputed)	N
1727	chr1	149782832	149782834	rs57324102	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.2	NR	rs57324102-A	0.0453	6E-6	(EA)	0.0885	[0.05-0.127] unit decrease	Illumina [~ 11800000] (imputed)	N
1727	chr1	149783071	149783072	rs2664726	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q21.2		rs2664726-?	NR	2E-10		0.0531625	[0.037-0.07] unit increase	Affymetrix [20259828] (imputed)	N
1727	chr1	149786632	149786633	rs115659429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q21.2	NR	rs115659429-T	NR	6E-10		0.0267	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1727	chr1	149786632	149786633	rs115659429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q21.2	NR	rs115659429-T	NR	1E-11		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1727	chr1	149786632	149786633	rs115659429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q21.2	NR	rs115659429-T	NR	3E-11		0.0294	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1727	chr1	149786632	149786633	rs115659429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.2	NR	rs115659429-T	NR	4E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1728	chr1	149815739	149815740	rs72708144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1q21.2		rs72708144-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1728	chr1	149844304	149844305	rs12138136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q21.2		rs12138136-A	NR	5E-12		0.0289	[0.021-0.037] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1728	chr1	149844304	149844305	rs12138136	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q21.2	HIST2H4B	rs12138136-T	0.914142	5E-12		0.024905	[0.018-0.032] unit increase	Affymetrix [NR] (imputed)	N
1728	chr1	149844304	149844305	rs12138136	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q21.2	OTUD7B	rs12138136-?	NR	7E-10		0.029	[0.021-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
1728	chr1	149846195	149846196	rs587739738	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q21.2	HIST2H2BE	rs587739738-C	0.917546	1E-12		0.0247506	[0.018-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1728	chr1	149846195	149846196	rs587739738	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q21.2	HIST2H2BE	rs587739738-C	0.917562	1E-9		0.0218726	[0.015-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1728	chr1	149860371	149860372	rs17581597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q21.2	BOLA1	rs17581597-T	NR	4E-8		0.028936	[0.019-0.039] unit decrease	Affymetrix [323123] (imputed)	N
1728	chr1	149866867	149866868	rs74910819	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.2	NR	rs74910819-?	NR	1E-12	(IL6RA)	1.34449	[0.97-1.72] unit increase	Illumina [11901634] (imputed)	N
1728	chr1	149867233	149867233	rs113011970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1q21.2		rs113011970-C	0.915722	4E-8		0.0377952	[0.024-0.051] unit increase	NR [11722792] (imputed)	N
1728	chr1	149880649	149880650	rs35002905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q21.2	NR	rs35002905-?	NR	9E-6		0.0809	[0.045-0.117] unit increase	Illumina [at least 560000] (imputed)	N
1728	chr1	149880862	149880863	rs68002561	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q21.2	NR	rs68002561-G	0.09202900000000003	3E-10		0.0124673	[0.0082-0.0167] unit increase	Affymetrix [16585854] (imputed)	N
1728	chr1	149880862	149880863	rs68002561	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q21.2	NR	rs68002561-G	0.09202900000000003	8E-8		0.0129167	[0.0081-0.0178] unit increase	Affymetrix [16585866] (imputed)	N
1728	chr1	149882810	149882811	rs72708162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q21.2	NR	rs72708162-T	0.07888499999999998	6E-14		0.0152127	[0.011-0.019] unit increase	Affymetrix [16582621] (imputed)	N
1728	chr1	149882810	149882811	rs72708162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q21.2	NR	rs72708162-T	0.07888499999999998	1E-13		0.015818	[0.011-0.02] unit increase	Affymetrix [16582614] (imputed)	N
1728	chr1	149885582	149885583	rs577935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	SV2A	rs577935-A	NR	8E-9		0.0265613	[0.018-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1728	chr1	149885799	149885800	rs41264630	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q21.2	NR	rs41264630-A	0.07997299999999996	4E-9		0.0135205	[0.0089-0.0182] unit increase	Affymetrix [16578495] (imputed)	N
1728	chr1	149885799	149885800	rs41264630	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q21.2	NR	rs41264630-A	0.08015700000000003	7E-20		0.0132929	[0.01-0.016] unit increase	Affymetrix [16582909] (imputed)	N
1728	chr1	149885799	149885800	rs41264630	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q21.2	NR	rs41264630-A	0.08015700000000003	8E-18		0.0141587	[0.011-0.018] unit increase	Affymetrix [16582965] (imputed)	N
1728	chr1	149886134	149886135	rs4926386	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1q21.2	SV2A	rs4926386-C	NR	2E-8	(adults)	0.044	[0.028-0.06] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1728	chr1	149891027	149891028	rs72692804	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q21.2	NR	rs72692804-G	0.9274	3E-10		0.0532	[0.037-0.07] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1728	chr1	149891584	149891585	rs139108488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	SV2A	rs139108488-C	NR	4E-8		0.0379529	[0.024-0.052] unit increase	Affymetrix [321016] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q21.2		rs11205277-G	0.211352	3E-33		0.0301794	[0.025-0.035] unit increase	Illumina [13479295] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.2	SV2A, SF3B4	rs11205277-?	NR	6E-39		0.046499692	[0.04-0.053] unit increase	Illumina [27896057] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q21.2	NR	rs11205277-?	NR	2E-6		0.03258909	[0.019-0.046] unit increase	Illumina [34656550] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	1q21.2	SF3B4, SV2A	rs11205277-?		1E-53				Illumina [9499600] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	1q21.2	SF3B4, SV2A	rs11205277-G	0.44	1E-85	(height)	0.03407	[0.031-0.037] unit increase	Illumina [9499600] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	4E-12		0.032	[0.023-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	3E-7	(men)	0.0325	[0.02-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	2E-7	(women)	0.0329	[0.021-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	5E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	4E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	1E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	4E-7	(women)	0.0284	[0.017-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	3E-14		0.0311	[0.023-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.2	SF3B4	rs11205277-A	0.596	2E-10	(men)	0.0354	[0.025-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	SF3B4	rs11205277-A	0.5855	2E-7	(EA,women)	0.0244	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	SF3B4	rs11205277-A	0.5855	1E-8	(EA, men)	0.0294	[0.019-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	SF3B4	rs11205277-A	0.5855	1E-13	(EA)	0.027	[0.02-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q21.2	SV2A	rs11205277-A	0.67	1E-12		0.046	[0.032-0.06] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	1q21.2	SF3B4	rs11205277-A	0.373	8E-6		0.041	[0.023-0.059] unit decrease	Affymetrix, Illumina [2201971] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q21.2	SF3B4	rs11205277-A	0.58	5E-32		0.046	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1728	chr1	149892871	149892872	rs11205277	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q21.2	Histone class 2A, MTMR11, SV2A, SF3B4	rs11205277-G	0.44	1E-10		5.1	[3.53-6.67] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1728	chr1	149894354	149894355	rs72692805	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q21.2	NR	rs72692805-G	0.9244	6E-10		0.0539	[0.037-0.071] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q21.2		rs11205303-C	0.37	5E-17		8.4	z score increase	Affymetrix [9061022] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q21.2		rs11205303-C	NR	1E-137		0.0346	[0.032-0.037] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q21.2	NR	rs11205303-C	0.4109	1E-17				NR [9056863] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q21.2	MTMR11	rs11205303-C	NR	1E-11		0.0195614	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q21.2	MTMR11	rs11205303-C	NR	2E-23		0.0312084	[0.025-0.037] unit increase	Affymetrix [321114] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q21.2	MTMR11	rs11205303-C	NR	1E-10		0.0190679	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	MTMR11	rs11205303-C	NR	6E-51		0.0427679	[0.037-0.048] unit increase	Affymetrix [321016] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q21.2	MTMR11	rs11205303-C	NR	3E-31		0.0361436	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q21.2		rs11205303-C	0.41	3E-36				NR [NR] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q21.2		rs11205303-C	0.41	3E-35		0.019	% increase	NR [NR] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	1q21.2	MTMR11	rs11205303-C	0.4	8E-8		1.06	[1.03 -1.08]	Illumina [at least 109036]	N
1728	chr1	149906412	149906413	rs11205303	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	1q21.2		rs11205303-C	NR	5E-7		1.0584251	NR	Affymetrix [7846216] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q21.2	MTMR11	rs11205303-T	0.593282	2E-11		0.0095816	[0.0068-0.0124] unit increase	Affymetrix [12370749]	N
1728	chr1	149906412	149906413	rs11205303	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q21.2	NR	rs11205303-C	0.407974	1E-9		0.0615646	[0.042-0.081] unit decrease	Affymetrix [21375087] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.2	NR	rs11205303-C	0.405619	3E-10		0.042792	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	1q21.2	MTMR11	rs11205303-C	0.21	2E-10		1.17	[1.11-1.23]	Illumina [9332516] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	1q21.2	MTMR11	rs11205303-C	0.209288	4E-8		1.16	[1.10-1.22]	Illumina [9332516] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q21.2	NR	rs11205303-?	NR	8E-10		0.04312308	[0.029-0.057] unit increase	Illumina [34656550] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	4E-99		0.05264	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	3E-22	(males)	0.03507	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	2E-87	(females)	0.06731	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	5E-92		0.05183	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	4E-23	(males)	0.03801	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.2	MTMR11, OTUD7B, SF3B4	rs11205303-C	0.39764	1E-76	(females)	0.06335	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.2		rs11205303-?	NR	6E-183				NR [~ 8900000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.2	NR	rs11205303-?	NR	5E-7	(female)	0.17584	[0.11-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.2	NR	rs11205303-?	NR	3E-11		0.14279	[0.1-0.18] unit increase	Affymetrix [7794483] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q21.2	NR	rs11205303-C	0.407109	4E-13		0.0224587	[0.016-0.029] unit decrease	NR [19129689] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.2	NR	rs11205303-C	0.3998	1E-14	(EA)	0.0497	[0.037-0.062] unit increase	Illumina [~ 11800000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q21.2	MTMR11	rs11205303-T	0.593	6E-7		0.034	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q21.2	MTMR11	rs11205303-T	0.5933	6E-7		0.0485	[0.029-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q21.2	MTMR11	rs11205303-T	0.5923	5E-15		0.0559	[0.042-0.07] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3839	8E-9	(EA, women)	0.031	[0.02-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3839	8E-14	(EA)	0.031	[0.023-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3839	2E-7	(EA, men)	0.0327	[0.02-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.37529999999999997	6E-16		0.0327	[0.025-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.37529999999999997	4E-9	(men)	0.0351	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.37529999999999997	3E-8	(women)	0.0337	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3873	2E-7	(EA,women)	0.0314	[0.019-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3839	1E-10	(EA)	0.0312	[0.022-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.38	3E-6	(EA, men)	0.0328	[0.019-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.37649999999999995	4E-6	(men)	0.0314	[0.018-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.37529999999999997	4E-11		0.0309	[0.022-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q21.2	MTMR11	rs11205303-C	0.3651	3E-6	(women)	0.0326	[0.019-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.3839	8E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.3839	2E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.3839	1E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.37529999999999997	7E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.37529999999999997	6E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q21.2	MTMR11	rs11205303-?	0.37529999999999997	5E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	MTMR11	rs11205303-T	0.6152	6E-25	(EA)	0.0413	[0.033-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	MTMR11	rs11205303-T	0.6152	2E-16	(EA, women)	0.042	[0.032-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.2	MTMR11	rs11205303-T	0.6152	2E-13	(EA,men)	0.0424	[0.031-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	1q21.2	SF3B4	rs11205303-C	0.34	2E-16		0.087	[0.065-0.109] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
1728	chr1	149906412	149906413	rs11205303	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q21.2	MTMR11	rs11205303-C	0.38	4E-23		1.25	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1728	chr1	149908107	149908108	rs1868992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q21.2	MTMR11	rs1868992-G	NR	3E-10		0.0221036	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1728	chr1	149909494	149909495	rs10494363	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q21.2	intergenic	rs10494363-A	0.0686	4E-10		0.0297	[0.02-0.039] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1728	chr1	149910774	149910775	rs72692823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q21.2		rs72692823-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1728	chr1	149914356	149914357	rs1061955	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.2	OTUD7B	rs1061955-A	0.014	4E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1728	chr1	149927033	149927034	rs12048493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q21.2		rs12048493-C	NR	4E-20		0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	1q21.2		rs12048493-A	NR	2E-10	(East Asian)			Affymetrix [NR] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1q21.2		rs12048493-A	NR	4E-14		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q21.2		rs12048493-?	NR	1E-17		0.0176397	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q21.2	OTUD7B	rs12048493-C	0.38	9E-14	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1q21.2	intergenic	rs12048493-C	0.34	2E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1728	chr1	149927033	149927034	rs12048493	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1q21.2	Intergenic	rs12048493-C	0.34	1E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1728	chr1	149938897	149938898	rs3767627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	OTUD7B	rs3767627-C	NR	3E-9		0.023677	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1728	chr1	149938897	149938898	rs3767627	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q21.2	OTUD7B	rs3767627-T	0.844	4E-19		0.036	[0.028-0.044] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1729	chr1	149950325	149950326	rs144830380	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q21.2	OTUD7B	rs144830380-T	0.986358	6E-16		0.0145597	[0.011-0.018] unit increase	Affymetrix [13995440] (imputed)	N
1729	chr1	149953409	149953410	rs115390301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.2		rs115390301-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1729	chr1	149956133	149956134	rs72692830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	OTUD7B	rs72692830-T	NR	6E-11		0.0437738	[0.031-0.057] unit increase	Affymetrix [321016] (imputed)	N
1729	chr1	149981883	149981884	rs67450539	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.2	NR	rs67450539-?	NR	5E-10	(IL6RA)	0.517839	[0.36-0.68] unit increase	Illumina [11901634] (imputed)	N
1729	chr1	149989433	149989434	rs12023231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q21.2	OTUD7B	rs12023231-C	NR	2E-9		0.0274564	[0.018-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1729	chr1	149989433	149989434	rs12023231	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q21.2	NR	rs12023231-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1729	chr1	149992593	149992594	rs72692840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q21.2		rs72692840-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1729	chr1	149992889	149992890	rs72692842	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q21.2	OTUD7B	rs72692842-C	0.90869	4E-20		0.0289522	[0.023-0.035] unit increase	NR [13737936] (imputed)	N
1729	chr1	149995264	149995265	rs67807996	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q21.2	NR	rs67807996-?	NR	5E-33				Affymetrix [~ 8270000] (imputed)	N
1729	chr1	149995264	149995265	rs67807996	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	1q21.2	intergenic	rs67807996-A	0.401613329806929	3E-102		0.03703219	unit increase	NR [9276018] (imputed)	N
1729	chr1	149995264	149995265	rs67807996	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q21.2	intergenic	rs67807996-A	0.364	7E-6		0.034	[0.018-0.05] unit increase	Affymetrix [7947838] (imputed)	N
1729	chr1	149995978	149995979	rs12060830	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.2	NR	rs12060830-C	0.09408	5E-9	(COL18A1)	0.02612	NR unit increase	Illumina [1671387] (imputed)	N
1729	chr1	150001631	150001632	rs72692857	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs72692857-?	NR	1E-10				NR [2625067]	N
1729	chr1	150001631	150001632	rs72692857	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs72692857-T	0.831	4E-10		0.09163021	[0.063-0.12] unit increase	NR [NR]	N
1729	chr1	150008789	150008790	rs12073359	25963547	Wilson CL	2015-05-11	Cancer	Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.	Obesity in adult survivors of childhood cancer not exposed to cranial radiation	359 obese individuals, 861 non-obese individuals	NA	1q21.2	VPS45	rs12073359-?	NR	5E-6		1.7	(1.4-2.1)	Affymetrix [NR] (imputed)	N
1729	chr1	150014016	150014017	rs2319280	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2319280-?	NR	5E-11				NR [2625067]	N
1729	chr1	150014016	150014017	rs2319280	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs2319280-A	0.168999999999999	4E-10		0.09241094	[0.063-0.121] unit decrease	NR [NR]	N
1729	chr1	150014016	150014017	rs2319280	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs2319280-?	NR	1E-9		1.0947267	[1.07-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
1729	chr1	150019579	150019580	rs7554367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q21.2	Intergenic	rs7554367-A	0.8425	7E-11	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1729	chr1	150026631	150026632	rs140441527	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	1q21.2		rs140441527-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1729	chr1	150029261	150029262	rs6587748	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q21.2		rs6587748-A	0.9278	2E-8		0.1246	[0.081-0.168] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr1	150029261	150029262	rs6587748	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs6587748-A	0.6525	2E-13		0.1246	[0.091-0.158] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr1	150029261	150029262	rs6587748	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.2		rs6587748-A	0.9294	3E-10		0.1215	[0.084-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr1	150029261	150029262	rs6587748	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs6587748-A	0.6551	2E-21		0.1107	[0.088-0.133] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr1	150031489	150031490	rs140505938	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1q21.2	NR	rs140505938-?		1E-10				NR [8377093]	N
1729	chr1	150031489	150031490	rs140505938	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1q21.2	VPS45, OTUD7B	rs140505938-?		2E-12				NR [6786993] (imputed)	N
1729	chr1	150031489	150031490	rs140505938	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1q21.2	ANP32E, CA14, OTUD7B, PLEKHO1, VPS45	rs140505938-?	NR	7E-10		1.087	[1.06-1.11]	Illumina [8000000] (imputed)	N
1729	chr1	150031489	150031490	rs140505938	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q21.2	NR	rs140505938-C	NR	4E-10		1.098901	[NR]	Illumina [7158791] (imputed)	N
1729	chr1	150031489	150031490	rs140505938	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1q21.2	ANP32E, APH1A, C1orf51, C1orf54, CA14, OTUD7B, PLEKHO1, VPS45	rs140505938-T	0.836	4E-10		1.0940919	[1.06-1.13]	Affymetrix, Illumina [9005918] (imputed)	N
1729	chr1	150038476	150038477	rs72692889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q21.2	VPS45	rs72692889-A	NR	3E-10		0.0790802	[0.054-0.104] unit increase	Affymetrix [323123] (imputed)	N
1729	chr1	150041404	150041405	rs7554419	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	1q21.2		rs7554419-C	NR	8E-6	(GLM)	0.9641	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1729	chr1	150066383	150066384	rs12058524	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	1q21.2	VPS45	rs12058524-T	0.15	2E-6		0.223	[0.13-0.32] unit decrease	Affymetrix [2366856] (imputed)	N
1730	chr1	150114082	150114083	rs7517537	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	1q21.2	VPS45	rs7517537-T	0.14	2E-6		0.227	[0.13-0.32] unit decrease	Affymetrix [2366856] (imputed)	N
1730	chr1	150115973	150115974	rs2318763	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	1q21.2	VPS45	rs2318763-A	0.17	5E-11				Affymetrix, Illumina [at least 918921] (imputed)	N
1730	chr1	150119176	150119177	rs72694951	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q21.2	VPS45	rs72694951-?	NR	7E-9		0.015576103	[0.01-0.021] unit increase	NR [7306098]	N
1730	chr1	150130095	150130096	rs78681982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q21.2	NR	rs78681982-A	NR	2E-11		0.0396	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr1	150130095	150130096	rs78681982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q21.2	NR	rs78681982-A	NR	2E-13		0.0428	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1730	chr1	150130095	150130096	rs78681982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.2	NR	rs78681982-A	NR	1E-10		0.0381	[0.027-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr1	150130095	150130096	rs78681982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.2	NR	rs78681982-A	NR	6E-12		0.0408	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr1	150138698	150138699	rs7544145	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q21.2	OTUD7B, VPS45, PLEKHO1, ANP32E, CA14, APH1A, C1orf54, C1orf51	rs7544145-T	0.812	5E-8		1.08535	[1.06-1.11]	NR [9372253] (imputed)	N
1730	chr1	150138708	150138709	rs55802315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q21.2	Intergenic	rs55802315-T	0.165	2E-14	(MTAG)	0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1730	chr1	150138708	150138709	rs55802315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q21.2	Intergenic	rs55802315-C	0.835	4E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1730	chr1	150139271	150139272	rs77051277	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	1q21.2	RP11-458I7.4	rs77051277-?	NR	4E-7		50.9	[10.6-243.6]	Illumina [654642] (imputed)	N
1730	chr1	150143301	150143302	rs78676616	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	1q21.2	NR	rs78676616-?		4E-11				NR [520857]	N
1730	chr1	150159615	150159616	rs3118119	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q21.2	LOC105371433	rs3118119-T	0.1799	4E-13		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1730	chr1	150163389	150163390	rs3118123	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.2	NR	rs3118123-T	0.3699	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1730	chr1	150163389	150163390	rs3118123	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q21.2		rs3118123-T	0.1326	8E-6		0.076	[0.043-0.109] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1730	chr1	150163389	150163390	rs3118123	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.2		rs3118123-T	0.6192	2E-41		0.2199	[0.19-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1730	chr1	150164057	150164058	rs10888574	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	1q21.2	NR	rs10888574-G	0.259	8E-11	(Males)	0.263931	[0.15-0.38] unit increase	Illumina [~ 6600000] (imputed)	N
1730	chr1	150166772	150166773	rs6692738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.2		rs6692738-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1730	chr1	150168155	150168156	rs12131063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q21.2		rs12131063-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1730	chr1	150179126	150179127	rs11588837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.2	NR	rs11588837-G	NR	6E-10		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr1	150179126	150179127	rs11588837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.2	NR	rs11588837-G	NR	3E-11		0.0236	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1730	chr1	150179126	150179127	rs11588837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.2	NR	rs11588837-G	NR	4E-9		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr1	150186090	150186091	rs956796	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q21.2		rs956796-A	0.1092	2E-8		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1730	chr1	150194425	150194430	rs56336280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q21.2	ANP32E	rs56336280-G	0.292507	8E-11		0.015942639	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1730	chr1	150200791	150200792	rs10888576	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1q21.2	NR	rs10888576-?	NR	5E-6				Illumina [7427422] (imputed)	N
1730	chr1	150204404	150204405	rs12401456	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q21.2		rs12401456-A	0.1667	8E-10		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1731	chr1	150211682	150211683	rs11205348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q21.2	ANP32E	rs11205348-A	0.286205	5E-11		0.016567098	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1731	chr1	150211736	150211737	rs10788872	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q21.2	ANP32E, CA14	rs10788872-A	0.582	8E-26		1.0382		Affymetrix [11880941] (imputed)	N
1731	chr1	150217549	150217549	rs587730493	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.2	NR	rs587730493-CT	0.23836	3E-8		0.0476626	[0.031-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
1731	chr1	150234656	150234657	rs34714364	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1q21.2	APH1A, CA14	rs34714364-T	0.17	2E-10		1.12	[1.08-1.16]	Illumina [7427422] (imputed)	N
1731	chr1	150236263	150236264	rs183441903	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	1q21.2		rs183441903-?	NR	6E-6				Illumina [7401356] (imputed)	N
1731	chr1	150249100	150249101	rs11205354	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q21.2	C1orf54	rs11205354-A	0.444	2E-11		0.017	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1731	chr1	150249100	150249101	rs11205354	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q21.2	C1orf54	rs11205354-A	0.444	3E-6		0.0112	[0.0065-0.0159] unit increase	Affymetrix [19819130] (imputed)	N
1731	chr1	150250533	150250534	rs10788873	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	1q21.2	NR	rs10788873-A	0.48	5E-9		0.026	[0.017-0.035] unit increase	Affymetrix [at least 12428592] (imputed)	N
1731	chr1	150250635	150250636	rs10157197	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1q21.2	PRPF3, TARS2	rs10157197-G	0.6	5E-7		1.05	[1.03-1.07]	NR [16760980] (imputed)	N
1731	chr1	150250635	150250636	rs10157197	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1q21.2	PRPF3, TARS2	rs10157197-G	0.6	6E-17		0.025	[0.017-0.033] unit increase	NR [16760980] (imputed)	N
1731	chr1	150250635	150250636	rs10157197	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	1q21.2	APH1A	rs10157197-A	0.4	1E-11		1.13	[1.09-1.17]	Affymetrix [73355677] (imputed)	N
1731	chr1	150250635	150250636	rs10157197	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	1q21.2	APH1A	rs10157197-A	0.4	1E-9		0.028	[0.018-0.038] unit increase	Affymetrix [~ 73355677] (imputed)	N
1731	chr1	150252328	150252329	rs11205355	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q21.2	C1orf54	rs11205355-A	0.4006	7E-6		0.0257	[0.015-0.037] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1731	chr1	150255586	150255587	rs2147324	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q21.2	C1orf51	rs2147324-?	NR	3E-8		0.014	[0.0095-0.0185] unit decrease	Affymetrix [5701386] (imputed)	N
1731	chr1	150257261	150257262	rs942453	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q21.2	OTUD7B, VPS45, PLEKHO1, ANP32E, CA14, APH1A, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, MCL1, ENSA, GOLPH3L	rs942453-?		3E-15				Affymetrix, Illumina [NR] (imputed)	N
1731	chr1	150257945	150257945	rs371339881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q21.2	C1orf51	rs371339881-TA	0.464299	2E-13		0.01677434	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1731	chr1	150262269	150262270	rs12740679	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	1q21.2	C1orf51	rs12740679-G	0.26	2E-12		0.586	[0.42-0.75] unit increase	Illumina [6690240] (imputed)	N
1731	chr1	150262269	150262270	rs12740679	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 221 European ancestry female cases, up to 20 East Asian ancestry female cases, up to 4,258 European ancestry female controls, up to 395 East Asian ancestry female controls	up to 134 European ancestry female cases, up to 12 East Asian ancestry female cases, up to 2,608 European ancestry female controls, up to 242 East Asian female controls	1q21.2	C1orf51	rs12740679-G	0.2584	1E-11		0.5975	[0.42-0.77] unit increase	Illumina [6690240] (imputed)	N
1731	chr1	150262269	150262270	rs12740679	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1q21.2	Intergenic	rs12740679-G	NR	4E-12		0.011	[0.0079-0.0141] unit increase	Affymetrix [9304965] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs7512552-T	0.475682	7E-13				Affymetrix, Illumina [22063850] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q21.2	NR	rs7512552-T	0.48684	3E-15		0.014798	[0.011-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q21.2		rs7512552-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q21.2	C1orf54, MRPS21	rs7512552-C	0.52	1E-9		1.031	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	1q21.2	C1orf51, MRPS21	rs7512552-T	0.49	1E-7	(random effects)		NR	Illumina [15539996] (imputed)	N
1731	chr1	150265703	150265704	rs7512552	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	1q21.2	C1orf51, MRPS21	rs7512552-C	0.51	5E-9	(EA, fixed effects)	1.0416667		Illumina [15539996] (imputed)	N
1731	chr1	150273453	150273454	rs138496123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.2	MRPS21	rs138496123-A	NR	9E-11		0.0574941	[0.04-0.075] unit increase	Affymetrix [321016] (imputed)	N
1731	chr1	150274609	150274610	rs543179	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1q21.2	MRPS21	rs543179-A	0.414	5E-9		0.311	[0.21-0.41] unit decrease	Affymetrix [NR] (imputed)	N
1731	chr1	150274609	150274610	rs543179	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q21.2	MRPS21	rs543179-A	0.45	3E-10		0.0019	[0.0013-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
1731	chr1	150276021	150276022	rs509345	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1q21.2	MRPS21	rs509345-?	NR	1E-10			[NR]	NR [NR] (imputed)	N
1731	chr1	150276021	150276022	rs509345	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q21.2	MRPS21	rs509345-A	0.5191	3E-19		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1731	chr1	150278388	150278389	rs12403795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs12403795-C	0.8568	4E-10				Affymetrix, Illumina [17210439] (imputed)	N
1731	chr1	150278388	150278389	rs12403795	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	1q21.2	NR	rs12403795-A	0.142	5E-6		12.28	[NR] unit decrease	Illumina [527829]	N
1731	chr1	150292416	150292417	rs1694379	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q21.2	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs1694379-?		9E-12				NR [7428630] (imputed)	N
1731	chr1	150292560	150292561	rs11581793	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q21.2	MRPS21, PRPF3	rs11581793-?		2E-8		0.1441	[0.094-0.194] unit increase	Illumina [31500000] (imputed)	N
1731	chr1	150298749	150298750	rs698914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q21.2	PRPF3	rs698914-G	0.613336	9E-17		0.018764565	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1731	chr1	150304780	150304781	rs1260405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q21.2	NR	rs1260405-G	0.397257	5E-23		0.018412	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1731	chr1	150309201	150309202	rs183091609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q21.2		rs183091609-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1731	chr1	150314849	150314850	rs61817477	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q21.2	NR	rs61817477-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1731	chr1	150314981	150314983	rs201983168	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	1q21.2	Intergenic	rs201983168-TACAC	0.3337	3E-7	(Outercanthal width)	0.4915	[0.29-0.69] unit decrease	Illumina [34985077] (imputed)	N
1731	chr1	150315723	150315724	rs56047090	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1q21.2	PRPF3	rs56047090-?		5E-7				Illumina [7405822] (imputed)	N
1731	chr1	150317558	150317558	rs782122127	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	1q21.2	PRPF3	rs782122127-D	0.19	3E-10		0.88364816	[NR]	Illumina [12493443] (imputed)	N
1731	chr1	150320846	150320847	rs2794682	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q21.2		rs2794682-T	0.396	4E-22		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1731	chr1	150321950	150321951	rs2794681	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q21.2	PRPF3	rs2794681-T	0.3986	8E-30		1.0404		Affymetrix [11880941] (imputed)	N
1731	chr1	150324283	150324284	rs11587682	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1q21.2	NR	rs11587682-C	NR	7E-6	(5 degree of freedom test)	1.086	[1.05-1.12]	NR [1252901] (imputed)	N
1731	chr1	150327105	150327106	rs11587758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1q21.2		rs11587758-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1731	chr1	150327896	150327896	rs370869951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q21.2	PRPF3	rs370869951-CA	NR	4E-8		0.0167198	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1731	chr1	150327896	150327896	rs370869951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q21.2	PRPF3	rs370869951-CA	0.378	3E-10		0.02394158	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1731	chr1	150327896	150327896	rs370869951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q21.2	PRPF3	rs370869951-CA	0.378	2E-9		0.02271718	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1731	chr1	150329468	150329469	rs1694367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q21.2	PRPF3	rs1694367-A	0.393798	1E-15		0.018647075	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1731	chr1	150331577	150331578	rs144405125	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1q21.2	RPRD2	rs144405125-A	0.9727	1E-7		0.0268	[0.017-0.037] unit increase	Affymetrix [~ 7740000] (imputed)	N
1731	chr1	150332954	150332955	rs1097070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINF2	5,336 Icelandic ancestry individuals	NA	1q21.2		rs1097070-T	0.3464	7E-18		0.138932	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
1732	chr1	150343608	150343609	rs11205363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.2	NR	rs11205363-G	NR	3E-11		0.0249	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1732	chr1	150351100	150351101	rs1694369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	NR	rs1694369-A	0.65890625	8E-10	(FN1, 3435_53_2)	0.15838285	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1732	chr1	150351100	150351101	rs1694369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	NR	rs1694369-A	0.65890625	6E-15	(FN1, 3434_34_1)	0.20090714	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1732	chr1	150351100	150351101	rs1694369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	NR	rs1694369-A	0.65890625	3E-10	(SERPINF2, 3024_18_2)	0.1508924	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1732	chr1	150351100	150351101	rs1694369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	NR	rs1694369-A	0.65890625	1E-45	(ECM1, 3366_51_2)	0.3661215	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1732	chr1	150354275	150354276	rs834233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q21.2		rs834233-A	NR	2E-19		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1732	chr1	150356928	150356929	rs74322702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q21.2	RPRD2	rs74322702-C	0.580714	3E-13		0.0167057	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1732	chr1	150363032	150363033	rs35274748	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q21.2	NR	rs35274748-?	NR	1E-22	(ECM1)			Illumina [~ 4000000] (imputed)	N
1732	chr1	150369336	150369337	rs1776270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q21.2	NR	rs1776270-A	0.63135	1E-15		0.015975	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1732	chr1	150371447	150371448	rs1260387	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	1q21.2	RPRD2	rs1260387-?	NA	5E-12		0.572	[0.41-0.73] unit decrease	Illumina [6690240] (imputed)	N
1732	chr1	150375425	150375425	rs782511737	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.2	NR	rs782511737-C	0.390323	4E-8		0.0377127	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
1732	chr1	150404668	150404669	rs12117104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q21.2		rs12117104-A	NR	1E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1732	chr1	150406171	150406172	rs141292640	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	1q21.2		rs141292640-G	0.856793	1E-8		0.058066	[0.037-0.079] decrease	Affymetrix [NR]	N
1732	chr1	150407595	150407596	rs72696880	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	1q21.2		rs72696880-?	NR	2E-8		0.0186	NR unit decrease	NR [4425810] (imputed)	N
1732	chr1	150407595	150407596	rs72696880	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.2	NR	rs72696880-A	0.0453	1E-8	(ATOX1)	0.01188	NR unit increase	Illumina [1671387] (imputed)	N
1732	chr1	150416912	150416913	rs16836940	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or bipolar disorder	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 7,481 European ancestry bipolar disorder cases, 9,250 European ancestry bipolar disorder controls	322,580 individuals	1q21.2	RPRD2	rs16836940-A	0.22	6E-8				Affymetrix, Illumina [at least 918921] (imputed)	N
1732	chr1	150425375	150425376	rs187799739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q21.2		rs187799739-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1732	chr1	150425375	150425376	rs187799739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.2		rs187799739-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1732	chr1	150447461	150447462	rs12040949	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	1q21.2	NR	rs12040949-C	0.62	3E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1732	chr1	150449700	150449701	rs78778914	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (HISTSYN.PWY..L.histidine.biosynthesis)	7,738 European ancestry individuals	NA	1q21.2		rs78778914-T	0.94725267	4E-8		0.21162489	[0.14-0.29] unit increase	Illumina [5584686] (imputed)	N
1732	chr1	150454723	150454724	rs9436116	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1q21.2	NR	rs9436116-?	NR	3E-10				Illumina [7427422] (imputed)	N
1732	chr1	150467752	150467753	rs9436119	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q21.2	TARS2	rs9436119-A	0.3842	6E-30		1.041		Affymetrix [11880941] (imputed)	N
1732	chr1	150467752	150467753	rs9436119	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q21.2	TARS2	rs9436119-A	0.3842	6E-30		1.0402905		Affymetrix [11880941] (imputed)	N
1733	chr1	150472780	150472781	rs7513205	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,339 Icelandic ancestry individuals	NA	1q21.2		rs7513205-G	0.3454	2E-19		0.167343	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1733	chr1	150472780	150472781	rs7513205	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECM1	5,334 Icelandic ancestry individuals	NA	1q21.2		rs7513205-G	0.3454	8E-69		0.307181	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
1733	chr1	150472868	150472869	rs7553867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,356 Icelandic ancestry individuals	NA	1q21.2		rs7553867-A	0.3453	1E-26		0.210878	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1733	chr1	150476185	150476186	rs77257036	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q21.2	TARS2	rs77257036-C	0.648424	4E-8		0.0120516	[0.0078-0.0163] unit increase	Affymetrix [NR] (imputed)	N
1733	chr1	150477060	150477061	rs3738487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q21.2	TARS2	rs3738487-T	0.398585	3E-24		0.023285741	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150478622	150478623	rs3754214	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q21.2	NR	rs3754214-?	NR	2E-10	(Extracellular matrix protein 1)			Illumina [514227]	N
1733	chr1	150479900	150479901	rs1815544	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q21.2	TARS2	rs1815544-C	0.601016	2E-20		0.00368335	[0.0029-0.0045] unit increase	Affymetrix [13995440] (imputed)	N
1733	chr1	150479900	150479901	rs1815544	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q21.2	TARS2	rs1815544-C	0.6	1E-12		7.1	z-score increase	Affymetrix [4312306] (imputed)	N
1733	chr1	150480570	150480571	rs12724450	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.2	TARS2, PRPF3, RPRD2, ECM1, FALEC, MRPS21, AC242988.1	rs12724450-A	0.08935743	2E-12	(EA, Extracellular matrix protein 1)	0.544	[0.4-0.69] unit increase	Affymetrix [509946]	N
1733	chr1	150483354	150483355	rs3737240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF13B	5,332 Icelandic ancestry individuals	NA	1q21.2		rs3737240-T	0.3451	2E-14		0.124526	[0.093-0.156] unit decrease	Illumina [7506463] (imputed)	N
1733	chr1	150484986	150484987	rs13294	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	1q21.2	NR	rs13294-?	NR	7E-22	(ECM1)	0.2	[0.16-0.24] unit decrease	Illumina [4020654] (imputed)	N
1733	chr1	150484986	150484987	rs13294	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.2	ECM1, MRPS21, RPRD2, TARS2, AC242988.1, PRPF3, FALEC	rs13294-A	0.3975904	8E-102	(Extracellular matrix protein 1)	0.8493	[0.78-0.92] unit decrease	Affymetrix [509946]	N
1733	chr1	150490369	150490370	rs58419446	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.2	FALEC	rs58419446-?	NR	6E-10		0.026183229	[0.018-0.034] unit increase	Illumina [27896057] (imputed)	N
1733	chr1	150492113	150492114	rs12129037	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q21.2	ECM1	rs12129037-T	NR	1E-8		1.094	[1.06-1.12]	Illumina [6627481] (imputed)	N
1733	chr1	150492113	150492114	rs12129037	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q21.2	ECM1	rs12129037-T	NR	1E-7	(EA)	1.0971	[1.06-1.13]	Illumina [6627481] (imputed)	N
1733	chr1	150492113	150492114	rs12129037	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q21.2	ECM1, MRPS21, RPRD2	rs12129037-T	NR	5E-9		1.096	[1.06-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1733	chr1	150493003	150493004	rs59898460	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	1q21.2	LINC00568, RP11-54A4.2	rs59898460-T	NR	5E-12		0.025	[0.017-0.033] unit increase	NR [NR] (imputed)	N
1733	chr1	150493003	150493004	rs59898460	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1q21.2	LINC00568	rs59898460-T	0.4044	9E-12		0.0169	[0.012-0.022] unit increase	NR [NR]	N
1733	chr1	150493924	150493925	rs11582423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs11582423-G	0.371143	2E-23				Affymetrix, Illumina [24588908] (imputed)	N
1733	chr1	150495378	150495378	rs367563576	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1q21.2	LINC00568, RP11-54A4.2	rs367563576-?	NR	2E-11			[NR]	NR [NR] (imputed)	N
1733	chr1	150496387	150496388	rs66464034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.2	NR	rs66464034-G	NR	7E-13		0.0263	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1733	chr1	150496387	150496388	rs66464034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.2	NR	rs66464034-G	NR	8E-14		0.0274	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1733	chr1	150496387	150496388	rs66464034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.2	NR	rs66464034-G	NR	2E-9		0.023	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1733	chr1	150499986	150499987	rs7366347	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q21.2	LINC00568	rs7366347-A	0.3969	3E-6		0.0285	[0.017-0.04] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1733	chr1	150504061	150504062	rs4970935	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	1q21.2	ECM1	rs4970935-C	0.25	3E-16		1.77	[1.54-2.03]	Illumina [~ 5000000] (imputed)	N
1733	chr1	150504061	150504062	rs377195216	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	1q21.2	ECM1	rs377195216-?	NA	6E-12		0.567	[0.41-0.73] unit increase	Illumina [6690240] (imputed)	N
1733	chr1	150507691	150507691	rs71580314	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q21.2	ADAMTSL4	rs71580314-A	0.513411	2E-9		1.0369785	[1.02482433278261-1.04927681656505]	NR [9572556] (imputed)	N
1733	chr1	150509168	150509169	rs1980062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q21.2		rs1980062-C	NR	7E-9		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1733	chr1	150509543	150509544	rs72700813	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	1q21.2		rs72700813-?	NR	7E-10		0.0186	NR unit decrease	NR [4484088] (imputed)	N
1733	chr1	150510659	150510660	rs6693567	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q21.2		rs6693567-C	0.26	3E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
1733	chr1	150510659	150510660	rs6693567	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q21.2		rs6693567-C	0.26	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
1733	chr1	150510659	150510660	rs6693567	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q21.2	NR	rs6693567-C	0.2669	3E-14				NR [9056863] (imputed)	N
1733	chr1	150510659	150510660	rs6693567	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q21.2	NR	rs6693567-?	NR	9E-15				NR [up to 7000000]	N
1733	chr1	150510659	150510660	rs6693567	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1q21.2	ADAMTSL4, ECM1	rs6693567-C	0.27	1E-8		1.05	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1733	chr1	150512316	150512320	rs199779493	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1q21.2	NR	rs199779493-GAGGA		2E-6		0.1151	[0.068-0.163] SD units increase	NR [10700000] (imputed)	N
1733	chr1	150514740	150514741	rs11204662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q21.2	NR	rs11204662-G	0.608106	2E-22		0.018642	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1733	chr1	150515743	150515744	rs12758483	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q21.2		rs12758483-T	0.777	8E-13				Affymetrix [10369434] (imputed)	N
1733	chr1	150522471	150522471	rs10668635	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	1q21.2		rs10668635-CTG	NR	5E-7		1.0822511	NR	Affymetrix [7846216] (imputed)	N
1733	chr1	150526233	150526253	rs199473693	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1q21.2		rs199473693-?	NR	1E-12		0.129681	[0.094-0.165] unit decrease	NR [9800000] (imputed)	N
1733	chr1	150527353	150527354	rs9659073	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q21.2	ADAMTSL4	rs9659073-A	0.4754	5E-26		0.0198	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1733	chr1	150531359	150531360	rs12097596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.2	NR	rs12097596-A	0.0409868	6E-11				Affymetrix, Illumina [24246363] (imputed)	N
1733	chr1	150535195	150535196	rs72700826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q21.2	NR	rs72700826-T	NR	1E-13		0.0332	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1733	chr1	150536180	150536180	rs111358816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q21.2		rs111358816-CAAG	NR	1E-13		0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1733	chr1	150537774	150537775	rs55975034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q21.2		rs55975034-A	NR	1E-9		0.0396	[0.027-0.052] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1733	chr1	150539970	150539971	rs4971044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q21.2	RN7SL473P	rs4971044-G	0.011554	1E-13		0.07737147	[0.057-0.098] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150539970	150539971	rs4971044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q21.2	RN7SL473P	rs4971044-G	0.011554	2E-16		0.08584893	[0.065-0.106] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150540180	150540181	rs72700829	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q21.2	NR	rs72700829-C	NR	3E-8		1.1363636	[NR]	Illumina [7158791] (imputed)	N
1733	chr1	150543127	150543128	rs11204666	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q21.2	ADAMTSL4, ADAMTSL4-AS1, MCL1	rs11204666-T	0.1835	3E-7		0.0389	[0.024-0.054] unit decrease	NR [8041861] (imputed)	N
1733	chr1	150543685	150543686	rs11204668	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q21.2		rs11204668-A	0.433243	2E-16		1.0357116	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
1733	chr1	150544092	150544093	rs6665912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q21.2		rs6665912-C	NR	6E-30		0.0294	[0.024-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1733	chr1	150544092	150544093	rs6665912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	1q21.2		rs6665912-C	0.179721	2E-9		0.0297431	[0.02-0.039] unit increase	Illumina [13477433] (imputed)	N
1733	chr1	150544092	150544093	rs6665912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q21.2	RN7SL473P, RN7SL600P	rs6665912-C	0.223365	1E-12		0.022500211	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150544092	150544093	rs6665912	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q21.2	ADAMTSL4-AS1	rs6665912-?	NR	3E-10		0.03526	[0.024-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1733	chr1	150545623	150545624	rs3795702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	1q21.2		rs3795702-T	0.137037	1E-9		0.0395811	[0.027-0.052] unit increase	Illumina [13469940] (imputed)	N
1733	chr1	150547746	150547747	rs878471	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	1q21.2		rs878471-?	NR	7E-6		0.969304	[0.96-0.98]	NR [688737]	N
1733	chr1	150547746	150547747	rs878471	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q21.2	MCL1	rs878471-A	0.5797	2E-31		0.0278	[0.023-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
1733	chr1	150547746	150547747	rs878471	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q21.2	MCL1	rs878471-A	0.5797	2E-21		0.0225	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1733	chr1	150547746	150547747	rs878471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q21.2		rs878471-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1733	chr1	150549525	150549526	rs34355066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q21.2	NR	rs34355066-A	0.011626	4E-12		0.058996	[0.042-0.076] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1733	chr1	150550923	150550924	rs34645101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1q21.2	MCL1	rs34645101-C	0.0113	4E-11		0.1112498	[0.078-0.144] unit increase	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150550923	150550924	rs34645101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1q21.2	MCL1	rs34645101-C	0.0113	2E-10		0.1075337	[0.075-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150551294	150551295	rs35661734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q21.2	MCL1	rs35661734-C	0.038592	8E-10		0.035016093	[0.024-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150551294	150551295	rs35661734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q21.2		rs35661734-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.2	NR	rs11580946-A	NR	1E-19		0.0864	[0.068-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q21.2	NR	rs11580946-A	NR	2E-9		0.0573	[0.039-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q21.2	NR	rs11580946-A	NR	1E-14		0.0737	[0.055-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	1q21.2		rs11580946-A	0.0147	2E-8		0.52310336	[0.34-0.7] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q21.2		rs11580946-A	0.015	3E-9		0.3882061	[0.26-0.52] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1733	chr1	150551326	150551327	rs11580946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q21.2		rs11580946-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1733	chr1	150552041	150552042	rs16837903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q21.2		rs16837903-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1733	chr1	150552041	150552042	rs16837903	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q21.2	NR	rs16837903-G		4E-6		0.1101	[0.063-0.157] SD units increase	NR [10700000] (imputed)	N
1733	chr1	150562042	150562043	rs190596489	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.2	MCL1	rs190596489-A	0.99296875	2E-7	(MCL1, 10396_6_3)	0.77823323	[0.48-1.07] unit increase	Illumina [> 1000000] (imputed)	N
1733	chr1	150563440	150563441	rs11352831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q21.2		rs11352831-C	0.580254	4E-11		0.014998808	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150563440	150563441	rs11352831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q21.2		rs11352831-C	0.580267	3E-17		0.019186547	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150564475	150564476	rs6698495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q21.2	intergenic	rs6698495-T	0.446132	5E-24		0.025662556	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q21.2		rs11204676-T	0.29	4E-19		8.93	z score increase	Affymetrix [9061022] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	1q21.2	MCL1	rs11204676-T	0.3239	6E-6				Affymetrix, Illumina [9900000] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q21.2	MCL1	rs11204676-T	0.3239	4E-6		0.0328	[0.019-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	1q21.2	MCL1	rs11204676-T	0.3239	1E-6		0.0338	[0.02-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	1q21.2	MCL1	rs11204676-T	0.3239	1E-7		0.0359	[0.023-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1733	chr1	150571148	150571149	rs11204676	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	1q21.2	MCL1	rs11204676-T	0.3239	7E-7		0.0345	[0.021-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1733	chr1	150572036	150572037	rs11585169	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	1q21.2	SNORA40	rs11585169-T	0.4225	8E-14		0.1557	[0.11-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1733	chr1	150574694	150574695	rs11204677	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q21.3	NR	rs11204677-?	NR	1E-7		0.0139735	[0.0088-0.0192] unit increase	Illumina [30613845] (imputed)	N
1733	chr1	150574694	150574695	rs11204677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q21.3	ENSA	rs11204677-G	0.5564	3E-41		0.0481697	[0.041-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150574694	150574695	rs11204677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q21.3	ENSA	rs11204677-G	0.5563	1E-39		0.04725766	[0.04-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150575753	150575754	rs113543611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q21.3	ENSA	rs113543611-T	0.038551	1E-9		0.0327264	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1733	chr1	150582905	150582906	rs148193595	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q21.3	intergenic	rs148193595-C	0.0160455	4E-6	(females)	0.02862	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q21.3		rs4970966-T	NR	6E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	1q21.3		rs4970966-T	0.179789	8E-14		0.0426344	[0.031-0.054] unit decrease	Illumina [13471440] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q21.3		rs4970966-T	NR	8E-143		0.0637	[0.059-0.069] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q21.3		rs4970966-G	0.777	3E-31				Affymetrix [10369434] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	1q21.3	NR	rs4970966-G	0.816839	3E-15		0.048627	[0.037-0.061] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs4970966-T	0.21234	3E-239				Affymetrix, Illumina [23467995] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q21.3	NR	rs4970966-T	0.222433	3E-228		0.072638	[0.068-0.077] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs4970966-T	0.21257	9E-72				Affymetrix, Illumina [19872809] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs4970966-T	0.212841	4E-22				Affymetrix, Illumina [19905671] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	1q21.3	MCL1, ENSA	rs4970966-?	NR	1E-10		0.04738	[0.033-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q21.3	ENSA	rs4970966-T	0.2251	4E-56		0.06773102	[0.059-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q21.3	ENSA	rs4970966-T	0.2251	5E-64		0.072678	[0.064-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150584102	150584103	rs4970966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q21.3	ENSA	rs4970966-T	0.225	4E-51		0.06472374	[0.056-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150584833	150584834	rs12045807	26965164	Hanchard NA	2016-03-09	Hum Mol Genet	A genome-wide association study of congenital cardiovascular left-sided lesions shows association with a locus on chromosome 20.	Congenital left-sided heart lesions	592 European ancestry cases, 2,676 European ancestry controls	367 European ancestry cases, 5,159 European ancestry controls	1q21.3	CTSS, CTSK, ARNT	rs12045807-C	0.089	9E-7		1.61		Illumina [534461]	N
1733	chr1	150586970	150586971	rs6681426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q21.3		rs6681426-A	NR	2E-14		0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1733	chr1	150586970	150586971	rs6681426	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	1q21.3	ENSA, MCL1	rs6681426-?	NR	1E-10		0.078	[0.055-0.101] unit decrease	Illumina [6108828] (imputed)	N
1733	chr1	150586970	150586971	rs6681426	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1q21.3	MCL1, ENSA	rs6681426-G	NR	6E-9	(adults)	0.029	[0.019-0.039] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1733	chr1	150586970	150586971	rs6681426	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1q21.3	MCL1, ENSA	rs6681426-G	NR	4E-9	(adults)	0.029	[0.019-0.039] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q21.3		rs11204682-T	NR	3E-47		0.0295	[0.026-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q21.3		rs11204682-G	0.777	2E-69				Affymetrix [10369434] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1q21.3		rs11204682-G	0.777	7E-22				Affymetrix [10369434] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	1q21.3		rs11204682-G	0.777	2E-9				Affymetrix [10369434] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q21.3	ENSA	rs11204682-T	0.222891	3E-48		0.045954544	[0.04-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q21.3	ENSA	rs11204682-T	0.222906	9E-86		0.060002826	[0.054-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q21.3	ENSA	rs11204682-T	0.22282	4E-39		0.034936655	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q21.3	ENSA	rs11204682-T	0.222846	5E-55		0.04173472	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q21.3	NR	rs11204682-T	0.223016	5E-67		0.041331	[0.037-0.046] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q21.3	NR	rs11204682-T	0.222917	2E-22		0.024032	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q21.3	ENSA	rs11204682-T	0.1931	6E-14		0.032	[0.024-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q21.3	NR	rs11204682-T	0.1966	3E-6	(women)	0.0283	[0.017-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q21.3	NR	rs11204682-T	0.1856	1E-7	(men)	0.0368	[0.023-0.05] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q21.3		rs11204682-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q21.3		rs11204682-?	NR	6E-64				NR [~ 8900000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q21.3	ENSA	rs11204682-?	NR	2E-11		0.05719	[0.04-0.074] unit increase novel	Illumina [6108953] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1q21.3	ENSA	rs11204682-?	NR	3E-9		0.05082	[0.034-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1q21.3	ENSA	rs11204682-T	0.2247	1E-20		0.04001962	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1q21.3	ENSA	rs11204682-T	0.2245	6E-19		0.03835488	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1q21.3	ENSA	rs11204682-T	0.2246	6E-15		0.03355051	[0.025-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1q21.3	ENSA	rs11204682-T	0.2245	2E-17		0.03670142	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150595536	150595537	rs11204682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1q21.3	ENSA	rs11204682-T	0.2247	5E-19		0.03827958	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1733	chr1	150597260	150597261	rs1971378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q21.3	ENSA	rs1971378-A	0.552478	1E-31		0.031079642	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1734	chr1	150608887	150608888	rs6587515	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	1q21.3	ENSA	rs6587515-A	0.1	5E-7	(EA)	5.0	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1734	chr1	150608887	150608888	rs6587515	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	1q21.3	ENSA	rs6587515-A	0.09	3E-9		5.94	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1734	chr1	150608887	150608888	rs6587515	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 1,284 African American women, 746 Hispanic Ancestry women, 390 Asian ancestry women, 294 Old Order Amish (founder/genetic isolate) women	NA	1q21.3	ENSA	rs6587515-?	NR	4E-6				Affymetrix, Illumina [~ 2600000] (imputed)	N
1734	chr1	150616698	150616699	rs7524620	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q21.3	ENSA, GOLPH3L	rs7524620-A	0.5935	3E-10		0.0108808	[0.0075-0.0143] unit increase	Affymetrix [11880941] (imputed)	N
1734	chr1	150618631	150618632	rs2055975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs2055975-A	0.289667	2E-8		0.0243621	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1734	chr1	150618631	150618632	rs2055975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q21.3		rs2055975-A	0.289667	3E-8		0.0243942	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1734	chr1	150618631	150618632	rs2055975	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q21.3		rs2055975-A	0.2895	4E-12		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1734	chr1	150618631	150618632	rs2055975	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q21.3	ENSA, GOLPH3L	rs2055975-A	0.2912	6E-15		1.0328		Affymetrix [11880941] (imputed)	N
1734	chr1	150618960	150618961	rs9733	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q21.3	NR	rs9733-?	NR	3E-7		0.0432	[0.027-0.06] unit increase	Illumina [at least 560000] (imputed)	N
1734	chr1	150625767	150625768	rs7538884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q21.3		rs7538884-A	NR	5E-23		0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1734	chr1	150636990	150636991	rs144984465	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1q21.3	GOLPH3L	rs144984465-A	0.070497	8E-14		1.1235955	[1.09-1.16]	Affymetrix [7600000] (imputed)	N
1734	chr1	150642997	150642998	rs184694823	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q21.3	GOLPH3L	rs184694823-A	0.922204	2E-8		0.0210566	[0.014-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1734	chr1	150651174	150651175	rs11800059	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q21.3	NR	rs11800059-?	NR	1E-8		0.01480802	[0.0097-0.0199] unit increase	Illumina [30613845] (imputed)	N
1734	chr1	150651174	150651175	rs11800059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q21.3	GOLPH3L	rs11800059-T	0.5146	9E-19		0.03155783	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	1q21.3		rs17599629-?	NR	2E-8		1.04619	[1.03-1.06]	NR [688737]	N
1734	chr1	150658286	150658287	rs17599629	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	1q21.3	NR	rs17599629-G	NR	7E-7		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	1q21.3		rs17599629-G	NR	7E-10		1.1097548	NR	Affymetrix [7846216] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1q21.3	NR	rs17599629-G	0.22	1E-11		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	1q21.3	NR	rs17599629-G	0.21	9E-6		1.12	[1.06-1.17]	Affymetrix [up to 19977088] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	1q21.3	NR	rs17599629-G	0.21	1E-6	(European)	1.14	[1.08-1.20]	Affymetrix [up to 19977088] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	1q21.3	GOLPH3L	rs17599629-G	0.22	6E-11	(EA)	1.1	[1.07-1.13]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1734	chr1	150658286	150658287	rs17599629	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	1q21.3	GOLPH3L	rs17599629-G	0.22	3E-9		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1734	chr1	150662178	150662179	rs11204701	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q21.3	GOLPH3L	rs11204701-A	0.7788	1E-14		0.03639	[0.027-0.046] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1734	chr1	150663506	150663507	rs11204702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs11204702-A	0.491555	2E-39				Affymetrix, Illumina [23472807] (imputed)	N
1734	chr1	150663506	150663507	rs11204702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q21.3	NR	rs11204702-A	0.509987	3E-42		0.025628	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1734	chr1	150663991	150663991	rs3059574	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q21.3		rs3059574-T	0.772126	7E-9		0.0285588	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1734	chr1	150666859	150666860	rs41305070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1q21.3		rs41305070-A	0.791511	4E-17		0.0366267	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1734	chr1	150666859	150666860	rs41305070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1q21.3		rs41305070-G	NR	1E-8		0.047	[0.031-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1734	chr1	150673683	150673684	rs4970926	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1q21.3		rs4970926-T	0.487	3E-13				Affymetrix [10369434] (imputed)	N
1734	chr1	150673683	150673684	rs4970926	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1q21.3		rs4970926-T	0.487	2E-15				Affymetrix [10369434] (imputed)	N
1734	chr1	150673683	150673684	rs4970926	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	1q21.3		rs4970926-?	NR	4E-8		0.0382	[0.02-0.056] unit decrease	NR [NR] (imputed)	N
1734	chr1	150673683	150673684	rs4970926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q21.3	HORMAD1	rs4970926-C	0.513377	9E-18		0.022447549	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr1	150673683	150673684	rs4970926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q21.3	HORMAD1	rs4970926-C	0.513356	1E-28		0.025129827	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1734	chr1	150679032	150679033	rs1336900	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	CTSS, CTSK, ARNT, HORMAD1, GOLPH3L, RNU6-1042P, RP11-363I22.3	rs1336900-A	0.3819095	1E-19	(EA, Cathepsin S)	0.4007	[0.32-0.49] unit increase	Affymetrix [509946]	N
1734	chr1	150682114	150682115	rs11204711	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	1q21.3	HORMAD1, GOLPH3L, SETDB1, RPRD2	rs11204711-A	0.616497	6E-10		0.01444	[0.0099-0.019] unit decrease	Affymetrix [19400838] (imputed)	N
1734	chr1	150684485	150684486	rs116279971	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q21.3	NR	rs116279971-C	0.011681000000000052	8E-20		0.0363513	[0.028-0.044] unit increase	Affymetrix [16582909] (imputed)	N
1734	chr1	150684485	150684486	rs116279971	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q21.3	NR	rs116279971-C	0.011677999999999966	5E-12		0.0398135	[0.028-0.052] unit increase	Affymetrix [16585854] (imputed)	N
1734	chr1	150684485	150684486	rs116279971	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q21.3	NR	rs116279971-C	0.011681000000000052	2E-15		0.0356425	[0.027-0.045] unit increase	Affymetrix [16582965] (imputed)	N
1734	chr1	150684485	150684486	rs116279971	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q21.3	NR	rs116279971-C	0.011677999999999966	5E-10		0.0413074	[0.028-0.055] unit increase	Affymetrix [16585866] (imputed)	N
1734	chr1	150685715	150685716	rs72702561	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	CTSS	rs72702561-T	0.9240625	4E-62	(CTSS, 3181_50_2)	0.76403034	[0.68-0.85] unit increase	Illumina [> 1000000] (imputed)	N
1734	chr1	150694479	150694480	rs12755416	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q21.3	HORMAD1	rs12755416-G	NR	6E-8		1.0824854	NR	Affymetrix, Illumina [8278136] (imputed)	N
1734	chr1	150696792	150696801	rs112158604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q21.3	HORMAD1	rs112158604-T	0.5142	3E-10		0.02270415	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1734	chr1	150697782	150697783	rs200492635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	HORMAD1	rs200492635-G	NR	1E-8		0.032096	[0.021-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1734	chr1	150697782	150697783	rs200492635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	HORMAD1	rs200492635-G	NR	2E-8		0.0317684	[0.021-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1734	chr1	150697782	150697783	rs200492635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	HORMAD1	rs200492635-G	NR	8E-9		0.0324526	[0.021-0.043] unit increase	Affymetrix [321016] (imputed)	N
1734	chr1	150701510	150701510	rs768283768	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	1q21.3	HORMAD1, CTSS	rs768283768-A	0.419751	1E-23		0.024685	[0.02-0.03] unit increase	Affymetrix [19400838] (imputed)	N
1734	chr1	150701510	150701510	rs768283768	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	1q21.3	HORMAD1, CTSS, GOLPH3L	rs768283768-A	0.419823	5E-9		0.014214	[0.0094-0.019] unit increase	Affymetrix [19400838] (imputed)	N
1734	chr1	150709722	150709723	rs6587520	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1q21.3	CTSS	rs6587520-T	0.48	9E-9		1.04	[1.03-1.06]	Illumina [5167567] (imputed)	N
1734	chr1	150714360	150714361	rs34826479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q21.3	CTSS	rs34826479-A	0.52469	3E-21		0.021057623	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1734	chr1	150716980	150716981	rs35375032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q21.3		rs35375032-T	NR	2E-23		0.0278	[0.022-0.033] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1734	chr1	150716980	150716981	rs35375032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q21.3	CTSS	rs35375032-T	0.217969	4E-13		0.019641444	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr1	150717487	150717488	rs72704611	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs72704611-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1734	chr1	150722843	150722844	rs11587444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1q21.3		rs11587444-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1734	chr1	150725400	150725401	rs61386199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q21.3		rs61386199-A	NR	2E-15		0.0203	[0.015-0.025] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1734	chr1	150725400	150725401	rs61386199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q21.3		rs61386199-A	NR	1E-19		0.0248	[0.02-0.03] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1734	chr1	150727538	150727539	rs2230061	24064335	Pei YF	2013-10-08	Hum Mol Genet	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Fat body mass	6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals	4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals	1q21.3	CTSS	rs2230061-A	NR	4E-8	(Adjusted by Lean body mass)	0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [4325550] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSS	5,364 Icelandic ancestry individuals	NA	1q21.3		rs41271951-G	0.08115	7E-120		0.7731	[0.71-0.84] unit decrease	Illumina [7506463] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	1q21.3	CTSS	rs41271951-G	0.084459	3E-9		0.11087466	[0.074-0.147] unit increase	Affymetrix [7260263] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	4E-15		0.0357	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	2E-17		0.0376	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	7E-22		0.0416	[0.033-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	2E-11		0.0291	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	7E-23		0.0427	[0.034-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	1E-18		0.0399	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.3	NR	rs41271951-G	NR	2E-19		0.0411	[0.032-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1q21.3	GOLPH3L	rs41271951-G	0.068047	1E-14		1.1235955	[1.09-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	CTSS	rs41271951-G	0.083	7E-94	(Cathepsin S, CTSS.3181.50.2)	0.86	[0.78-0.94] unit decrease	Affymetrix [10572788] (imputed)	N
1735	chr1	150737219	150737220	rs41271951	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	CTSS, GOLPH3L, HORMAD1	rs41271951-G	0.0892678	4E-40	(EA, Cathepsin S)	0.9647	[0.83-1.1] unit decrease	Affymetrix [509946]	N
1735	chr1	150739034	150739035	rs34711732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs34711732-T	NR	2E-13		0.0266	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150739034	150739035	rs34711732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q21.3	NR	rs34711732-T	NR	1E-9		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150742699	150742700	rs11204725	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1q21.3		rs11204725-?	NR	7E-6		0.952277	[0.93-0.97]	NR [685523]	N
1735	chr1	150742699	150742700	rs11204725	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q21.3	CTSS, CTSK	rs11204725-C	0.55	2E-18		8.74	z-score increase	Affymetrix [4314223] (imputed)	N
1735	chr1	150748134	150748134	rs143634417	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q21.3		rs143634417-?	NR	6E-10		0.015445	[0.01-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1735	chr1	150762170	150762171	rs10888395	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q21.3	NR	rs10888395-C		6E-7		0.0814	[0.049-0.113] SD units increase	NR [10700000] (imputed)	N
1735	chr1	150772612	150772613	rs1811698	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q21.3	NR	rs1811698-C	NR	3E-14		1.077	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1735	chr1	150783457	150783458	rs10305751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q21.3		rs10305751-?	NR	4E-7				NR [~ 8900000] (imputed)	N
1735	chr1	150786037	150786038	rs10305745	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q21.3	FAM63A	rs10305745-A	0.0145	4E-6		1.28	[1.15-1.42]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1735	chr1	150804483	150804484	rs9325978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs9325978-C	NR	1E-10		0.0443	[0.031-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1735	chr1	150809032	150809033	rs35665093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs35665093-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1735	chr1	150815410	150815411	rs3768013	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs3768013-A	0.369605	1E-13		0.01488	[0.011-0.019] unit decrease	Affymetrix [16668957] (imputed)	N
1735	chr1	150819091	150819092	rs10305677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs10305677-?	NR	4E-37				NR [~ 8900000] (imputed)	N
1735	chr1	150833009	150833010	rs72704658	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	1q21.3	SETDB1	rs72704658-?	NR	2E-10				Affymetrix, Illumina [7850345] (imputed)	N
1735	chr1	150837359	150837360	rs587599690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q21.3		rs587599690-C	NR	7E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1735	chr1	150839685	150839686	rs10305664	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1q21.3	ARNT	rs10305664-C	0.352	7E-6		0.0072	[0.0041-0.0103] unit increase	Affymetrix [~ 7740000] (imputed)	N
1735	chr1	150839698	150839698	rs58175144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q21.3	ARNT	rs58175144-CA	0.303743	8E-9		0.0145629095	[0.0096-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1735	chr1	150839698	150839698	rs58175144	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q21.3	NR	rs58175144-CA	0.30288000000000004	4E-12		0.0214802	[0.015-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1735	chr1	150839698	150839698	rs58175144	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1q21.3	ARNT	rs58175144-CA	0.301172	1E-8		0.0413753	[0.027-0.056] unit increase	Affymetrix [9463307] (imputed)	N
1735	chr1	150842695	150842696	rs72992015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q21.3	ARNT	rs72992015-T	NR	4E-9		0.0221216	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1735	chr1	150842695	150842696	rs72992015	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q21.3	ARNT	rs72992015-T	0.206	1E-29	(EA)	0.0049	[0.0041-0.0057] unit increase	Affymetrix [NR] (imputed)	N
1735	chr1	150860470	150860471	rs7412746	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1q21.3	RP11-316M1.12	rs7412746-C	0.472067	7E-14				Affymetrix, Illumina [NR] (imputed)	N
1735	chr1	150860470	150860471	rs7412746	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	1q21.3	ARNT	rs7412746-T	0.47	9E-11		1.15	[NR]	Illumina [at least 560000] (imputed)	N
1735	chr1	150860470	150860471	rs7412746	21983785	Macgregor S	2011-10-09	Nat Genet	Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3.	Melanoma	2,168 European ancestry cases, 4,387 European ancestry controls	5,193 European ancestry cases, 15,144 European ancestry controls	1q21.3	ARNT, SETDB1, LASS2, ANXA9, MCL1, CTSK	rs7412746-T	0.55	9E-11		1.15	[NR]	Illumina [5480804] (imputed)	N
1735	chr1	150861959	150861960	rs10399947	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	1q21.3	ARNT, SETDB1	rs10399947-A	0.36	7E-9		0.07	[0.05-0.09] unit decrease	NR [13607369] (imputed)	N
1736	chr1	150868101	150868102	rs78132593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q21.3		rs78132593-A	NR	3E-46		0.0317	[0.027-0.036] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1736	chr1	150868101	150868102	rs78132593	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	1q21.3	ARNT	rs78132593-A	0.2084	3E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1736	chr1	150868101	150868102	rs78132593	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1q21.3	ARNT	rs78132593-A	0.194	4E-13		0.502	[0.37-0.64] unit increase	Affymetrix [NR] (imputed)	N
1736	chr1	150868101	150868102	rs78132593	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q21.3	intergenic	rs78132593-A	0.2187	4E-9		0.02560931	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1736	chr1	150871406	150871407	rs2925738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q21.3		rs2925738-A	0.670145	4E-9		0.0255524	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1736	chr1	150871406	150871407	rs2925738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q21.3		rs2925738-A	0.670144	8E-9		0.0247574	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1736	chr1	150878099	150878100	rs61678849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q21.3	CYCSP51	rs61678849-T	0.219955	3E-12		0.018737638	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr1	150878099	150878100	rs61678849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q21.3	CYCSP51	rs61678849-T	0.219976	1E-13		0.019951405	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr1	150878099	150878100	rs61678849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q21.3	CYCSP51	rs61678849-T	0.219939	2E-9		0.016158545	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr1	150878099	150878100	rs61678849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q21.3	CYCSP51	rs61678849-T	0.219936	3E-13		0.019488312	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr1	150878099	150878100	rs61678849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q21.3	CYCSP51	rs61678849-T	0.219941	9E-15		0.020729892	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr1	150888404	150888404	rs773001561	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q21.3	PRUNE	rs773001561-?	NR	4E-8		0.0147	[0.01-0.0194] unit increase	Affymetrix [5701386] (imputed)	N
1736	chr1	150901861	150901861	rs35486314	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q21.3	NR	rs35486314-AT		5E-7		0.0791	[0.048-0.11] SD units increase	NR [10700000] (imputed)	N
1736	chr1	150903233	150903234	rs2867296	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	1q21.3	SETDB1	rs2867296-C	0.3606	3E-12	(CTSS)	0.38761	[0.28-0.5] unit decrease	Illumina [8683751] (imputed)	N
1736	chr1	150916221	150916222	rs148634917	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	1q21.3	NR	rs148634917-G		5E-6		0.5052	[0.29-0.72] SD units increase	NR [10700000] (imputed)	N
1736	chr1	150919841	150919842	rs6694978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q21.3	NR	rs6694978-T	NR	3E-14		0.0316	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150930925	150930926	rs114908993	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1q21.3	SETDB1	rs114908993-C	0.9664	9E-6		0.0185	[0.01-0.027] unit increase	Affymetrix [~ 7740000] (imputed)	N
1736	chr1	150935316	150935317	rs525676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	SETDB1, CERS2	rs525676-T	NR	4E-9		0.0414843	[0.028-0.055] unit decrease	Affymetrix [321016] (imputed)	N
1736	chr1	150936902	150936903	rs1045628	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs1045628-C	0.02439	4E-10	(JAK3)	0.06227	NR unit increase	Illumina [1671387] (imputed)	N
1736	chr1	150937404	150937405	rs198325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q21.3		rs198325-C	0.779834	4E-15		0.0382171	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
1736	chr1	150937404	150937405	rs198325	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q21.3		rs198325-C	0.779834	3E-9		0.0286109	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150937404	150937405	rs198325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q21.3		rs198325-T	NR	9E-21		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1736	chr1	150938570	150938571	rs8444	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1q21.3	RP11-316M1.12	rs8444-G	0.6445	4E-14		1.0801	NR	Affymetrix, Illumina [NR] (imputed)	N
1736	chr1	150938876	150938877	rs41308401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q21.3	NR	rs41308401-G	NR	3E-9		0.0346	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	4E-17		0.0417145	[0.032-0.051] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-17		0.0390781	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-11		0.0297525	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	5E-14		0.0353307	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-16		0.0409748	[0.031-0.051] unit increase	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-18		0.0430175	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	2E-17		0.039452	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	2E-12		0.0316561	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	6E-10		0.0275649	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	4E-12		0.0338171	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	5E-14		0.0341585	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	2E-16		0.0411276	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	4E-16		0.0373076	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	1E-16		0.0388088	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	1E-12		0.0345845	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	6E-19		0.044418	[0.035-0.054] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	9E-18		0.0395295	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	1E-10		0.0288416	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-18		0.043411	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	3E-17		0.0386702	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q21.3		rs267738-T	0.780348	6E-14		0.0342009	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1736	chr1	150940624	150940625	rs267738	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	1q21.3		rs267738-?	NR	2E-7		1.04351	[1.03-1.06]	NR [688737]	N
1736	chr1	150940624	150940625	rs267738	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1q21.3	CERS2	rs267738-T	0.7902	1E-11		0.0109	[0.0078-0.014] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1736	chr1	150940624	150940625	rs267738	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q21.3	CERS2	rs267738-T	0.780647	1E-20		0.0214169	[0.017-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1736	chr1	150940624	150940625	rs267738	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q21.3	CERS2	rs267738-T	0.780702	1E-47		0.0343544	[0.03-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1736	chr1	150940624	150940625	rs267738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q21.3	CERS2	rs267738-T	0.7985	1E-48		0.0048	[0.004-0.0056] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1736	chr1	150940624	150940625	rs267738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q21.3	CERS2	rs267738-T	0.7864	2E-48		0.005	[0.0042-0.0058] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1736	chr1	150940624	150940625	rs267738	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q21.3	CERS2	rs267738-G	0.1075	3E-20		9.238	NR z score increase	Illumina [26237160] (imputed)	N
1736	chr1	150940624	150940625	rs267738	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1q21.3	ANXA9	rs267738-T	0.886	2E-10		0.226	[-0.04056-0.49256] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1736	chr1	150940624	150940625	rs267738	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q21.3	CERS2	rs267738-T	0.8083	6E-12		0.0248	[0.018-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1736	chr1	150940624	150940625	rs267738	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	1q21.3	CERS2	rs267738-T	0.7701	3E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1736	chr1	150940624	150940625	rs267738	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1q21.3	ANXA9	rs267738-T	NR	1E-14		0.0091	[0.0069-0.0113] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1736	chr1	150940624	150940625	rs267738	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	NR	rs267738-?	NR	9E-17	(EA, Cathepsin S)			Affymetrix [509946]	N
1736	chr1	150940624	150940625	rs267738	23585552	Kirin M	2013-04-11	Hum Mol Genet	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	1q21.3	PRUNE, ARNT, ANXA9, CERS2, MCL1, SETBD1, CTSK, CTSS, GOLPH3L, FAM63A, HORMAD1, ADAMTSL4, ENSA	rs267738-A	0.275	1E-7		1.23	[1.14-1.33]	Illumina [299737]	N
1736	chr1	150950061	150950062	rs4970988	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q21.3	ARNT	rs4970988-A	0.36	1E-7	(network)	0.028	[0.018-0.038] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1736	chr1	150951476	150951477	rs267734	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q21.3		rs267734-T	0.783019	5E-10		0.0311306	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1736	chr1	150951476	150951477	rs267734	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	1q21.3	LASS2	rs267734-T	NR	3E-12		0.0079	[0.0057-0.0101] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1736	chr1	150951476	150951477	rs267734	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	1q21.3	LASS2	rs267734-T	0.79	4E-13	(EA)	0.0079	[0.0057-0.0101] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1736	chr1	150951476	150951477	rs267734	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	1q21.3	SETDB1, LASS2, ANXA9, PRUNE, FAM63A, BNIPL	rs267734-C	0.2	1E-12	(eGFRcrea)	0.01	[0.004-0.016] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1736	chr1	150952673	150952674	rs6587551	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	1q21.3		rs6587551-C	NR	2E-9		1.071	[1.047-1.095]	Affymetrix [7846216] (imputed)	N
1736	chr1	150952673	150952674	rs6587551	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	1,792 European ancestry male individuals	NA	1q21.3	CERS2, ANXA9	rs6587551-T	0.458	6E-7		0.219	[0.13-0.31] unit decrease	Illumina [7251583] (imputed)	N
1736	chr1	150954670	150954671	rs607518	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q21.3	NR	rs607518-A	NR	8E-12		1.063	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1736	chr1	150954670	150954671	rs607518	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q21.3		rs607518-?	NR	7E-12		0.0168176	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1736	chr1	150954719	150954720	rs28521412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	ANXA9	rs28521412-A	NR	1E-16		0.0946028	[0.072-0.117] unit increase	Affymetrix [321016] (imputed)	N
1736	chr1	150954719	150954720	rs28521412	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.3	NR	rs28521412-?	NR	2E-6		0.41951	[0.25-0.59] unit increase	Affymetrix [7794483] (imputed)	N
1736	chr1	150954719	150954720	rs28521412	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.3	NR	rs28521412-?	NR	1E-6	(female)	0.48049	[0.29-0.67] unit increase	Affymetrix [7794483] (imputed)	N
1736	chr1	150956127	150956128	rs12405726	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1q21.3	ANXA9	rs12405726-A	0.3514	2E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix [~ 7740000] (imputed)	N
1736	chr1	150958132	150958133	rs11204752	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	1q21.3	ANXA9	rs11204752-T	0.46009	2E-8		1.0986696	[1.06-1.13]	NR [NR] (imputed)	N
1736	chr1	150958835	150958836	rs267733	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	1q21.3	NA	rs267733-G	0.0804	5E-6		4.377	[2.245-8.535]	Illumina [243345]	N
1736	chr1	150958835	150958836	rs267733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q21.3		rs267733-G	NR	3E-17		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	2E-15		0.0271	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	1E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	1E-20		0.0304	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	9E-20		0.0296	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	7E-18		0.0281	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	4E-20		0.03	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	5E-10		0.0204	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	3E-10		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	8E-10		0.0201	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	9E-12		0.0233	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q21.3	NR	rs267733-G	NR	7E-17		0.0273	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q21.3	ANXA9	rs267733-G	0.160893	9E-10		0.018295819	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q21.3	NR	rs267733-A	0.838774	1E-12		0.0118795	[0.0085-0.0153] unit increase	Affymetrix [16578495] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q21.3	NR	rs267733-A	0.838673	2E-8		0.0228514	[0.015-0.031] unit increase	Affymetrix [16577313] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q21.3	NR	rs267733-A	0.838823	7E-29		0.0122992	[0.01-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q21.3	NR	rs267733-A	0.838969	4E-21		0.0144151	[0.011-0.018] unit increase	Affymetrix [16585854] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q21.3	NR	rs267733-A	0.838823	5E-26		0.0129483	[0.01-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1736	chr1	150958835	150958836	rs267733	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q21.3	NR	rs267733-A	0.838969	1E-15		0.0142196	[0.01-0.018] unit increase	Affymetrix [16585866] (imputed)	N
1736	chr1	150958835	150958836	rs267733	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q21.3	ANXA9	rs267733-G	0.15910000000000002	2E-14		1.0375596		Affymetrix [11880941] (imputed)	N
1736	chr1	150958835	150958836	rs267733	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1q21.3	ANXA9, CERS2	rs267733-A	0.863	4E-8	(Trans-ethnic initial)	0.0331	[0.023-0.043] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1736	chr1	150958835	150958836	rs267733	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q21.3	ANXA9, CERS2	rs267733-G	0.16	5E-9		0.033	[NR] unit decrease	NR [NR] (imputed)	N
1736	chr1	150958976	150958977	rs2305814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q21.3	Intergenic	rs2305814-T	0.566	1E-8	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1736	chr1	150958976	150958977	rs2305814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q21.3	Intergenic	rs2305814-T	0.566	2E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1736	chr1	150961868	150961869	rs1722784	21926416	Amos CI	2011-09-22	Hum Mol Genet	Genome-wide association study identifies novel loci predisposing to cutaneous melanoma.	Melanoma	1,804 European ancestry cases, 1,026 European ancestry controls	6,483 European and Middle East/North African ancestry cases, 23,324 European and Middle East/North African ancestry controls	1q21.3	ANXA9	rs1722784-?	NR	2E-6		1.12	[NR]	Illumina [818977]	N
1736	chr1	150971194	150971195	rs79366331	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	1q21.3		rs79366331-?	NR	3E-8		0.0191	NR unit decrease	NR [4428082] (imputed)	N
1736	chr1	150972958	150972959	rs140386498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q21.3	NR	rs140386498-T	NR	1E-9		0.0682	[0.046-0.09] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150972958	150972959	rs140386498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q21.3	NR	rs140386498-T	0.012843000000000049	4E-12		0.0335022	[0.024-0.043] unit increase	Affymetrix [16582621] (imputed)	N
1736	chr1	150972958	150972959	rs140386498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q21.3	NR	rs140386498-T	0.012843000000000049	1E-9		0.0319237	[0.021-0.043] unit increase	Affymetrix [16582614] (imputed)	N
1736	chr1	150972958	150972959	rs140386498	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	1q21.3	FAM63A	rs140386498-A	0.986	6E-8		1.2	[1.13-1.28]	Affymetrix, Illumina [247470]	N
1736	chr1	150972958	150972959	rs140386498	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	1q21.3	FAM63A	rs140386498-A	0.988	7E-7		1.19	[1.12-1.26]	Affymetrix, Illumina [247470]	N
1736	chr1	150972958	150972959	rs140386498	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	1q21.3	FAM63A	rs140386498-A	0.986	6E-8		1.22	[1.14-1.30]	Affymetrix, Illumina [247470]	N
1736	chr1	150972958	150972959	rs140386498	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	1q21.3	FAM63A	rs140386498-A	0.988	8E-8		1.21	[1.14-1.28]	Affymetrix, Illumina [247470]	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	4E-13		0.0353	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	9E-15		0.037	[0.028-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	9E-18		0.0399	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	2E-9		0.0278	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	3E-19		0.0417	[0.032-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	2E-18		0.0426	[0.033-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150974970	150974971	rs41310885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.3	NR	rs41310885-A	NR	4E-15		0.0383	[0.029-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1736	chr1	150981224	150981225	rs6684154	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q21.3	PRUNE1	rs6684154-?	NR	3E-8		0.0061	[0.0037-0.0085] unit decrease	Affymetrix [21347608] (imputed)	N
1736	chr1	150981224	150981225	rs6684154	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q21.3	PRUNE1	rs6684154-?	NR	3E-15		0.0142	[0.011-0.018] unit decrease	Affymetrix [21347608] (imputed)	N
1736	chr1	150981224	150981225	rs6684154	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q21.3	PRUNE1	rs6684154-C	0.984478	1E-21		0.0150708	[0.012-0.018] unit increase	Affymetrix [13995440] (imputed)	N
1737	chr1	150995235	150995236	rs4970934	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1q21.3		rs4970934-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1737	chr1	150999736	150999737	rs11204762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	PRUNE	rs11204762-G	NR	4E-8		0.0179725	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1737	chr1	150999736	150999737	rs11204762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	PRUNE	rs11204762-G	NR	4E-8		0.0179189	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1737	chr1	150999736	150999737	rs11204762	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs11204762-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1737	chr1	150999736	150999737	rs11204762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q21.3		rs11204762-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1737	chr1	150999736	150999737	rs11204762	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q21.3	NR	rs11204762-A	0.7695	3E-11		0.014	[0.0099-0.0181] unit increase	NR [~ 27400000] (imputed)	N
1737	chr1	151004364	151004365	rs7532312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs7532312-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1737	chr1	151006538	151006539	rs3738476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q21.3	NR	rs3738476-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1737	chr1	151006538	151006539	rs3738476	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q21.3	NA	rs3738476-A	0.8769	3E-14		0.0195	[0.014-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1737	chr1	151009207	151009208	rs41266605	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1q21.3	BNIPL	rs41266605-G	NR	4E-7		1.0687	[0.66-1.48] unit increase	Illumina [NR] (imputed)	N
1737	chr1	151014133	151014134	rs6694158	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q21.3	NR	rs6694158-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1737	chr1	151017990	151017991	rs145904381	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q21.3	NR	rs145904381-C	0.0104	4E-14		0.1735	[0.13-0.22] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1737	chr1	151017990	151017991	rs145904381	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q21.3	NR	rs145904381-C	0.0104	4E-13		0.1607	[0.12-0.2] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1737	chr1	151017990	151017991	rs145904381	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q21.3	FAM63A	rs145904381-T	0.9867	3E-8		1.19	[1.12-1.26]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1737	chr1	151018860	151018861	rs6587552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q21.3		rs6587552-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1737	chr1	151019179	151019180	rs6587553	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1q21.3	NA	rs6587553-A	0.1971	5E-11		0.0141	[0.01-0.0182] unit increase	NR [~ 27400000] (imputed)	N
1737	chr1	151028928	151028929	rs2864700	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Osteoporosis	7,092 Japanese ancestry female cases, 96,014 Japanese ancestry female controls	NA	1q21.3		rs2864700-T	0.859074869	2E-8		1.1798888	[1.113628882-1.250091173]	Illumina [8919992] (imputed)	N
1737	chr1	151031008	151031009	rs181649535	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	1q21.3	Intergenic	rs181649535-?		9E-6		136.3	[76.32-196.28] unit increase	Illumina [~ 10000000] (imputed)	N
1737	chr1	151033978	151033979	rs10749659	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q21.3	MLLT11	rs10749659-C	0.227587	4E-10		0.0101834	[0.007-0.0134] unit increase	Affymetrix [12370749]	N
1737	chr1	151035627	151035628	rs6694357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q21.3		rs6694357-C	0.031871	8E-9		0.0327394	[0.022-0.044] unit increase	Illumina [13479295] (imputed)	N
1737	chr1	151035627	151035628	rs6694357	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.3	MLLT11	rs6694357-?	NR	2E-10		0.051444966	[0.036-0.067] unit increase	Illumina [27896057] (imputed)	N
1737	chr1	151044036	151044037	rs4970936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q21.3		rs4970936-T	NR	4E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1737	chr1	151045023	151045024	rs12759273	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	MENT	rs12759273-C	0.9884375	9E-9	(MENT, 5744_12_3)	0.66920334	[0.44-0.9] unit increase	Illumina [> 1000000] (imputed)	N
1737	chr1	151054179	151054180	rs11204771	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q21.3	GABPB2	rs11204771-G	0.219749	2E-9		0.0151394	[0.01-0.02] unit decrease	NR [16516521] (imputed)	N
1737	chr1	151063298	151063299	rs115161931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q21.3	GABPB2	rs115161931-T	0.0402	5E-15		0.0393	[0.029-0.049] unit decrease	Affymetrix [18391927] (imputed)	N
1737	chr1	151063298	151063299	rs115161931	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.3	NR	rs115161931-T	0.0399092	2E-8		0.0993317	[0.064-0.135] unit decrease	Affymetrix [17914406] (imputed)	N
1737	chr1	151099556	151099557	rs4360524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q21.3		rs4360524-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1737	chr1	151103152	151103153	rs4357530	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q21.3	SEMA6C	rs4357530-G	0.334	3E-6		0.015	[0.0085-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1737	chr1	151103152	151103153	rs4357530	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q21.3	SEMA6C	rs4357530-G	0.325	5E-6	(EA, women)	0.019	[0.011-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1737	chr1	151103152	151103153	rs4357530	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q21.3	SEMA6C	rs4357530-G	0.323	2E-6	(EA)	0.016	[0.0095-0.0225] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1737	chr1	151115689	151115690	rs4512652	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q21.3	NR	rs4512652-G	NR	1E-7		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1737	chr1	151115689	151115690	rs4512652	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q21.3	GOLPH3L, CTSK, SETDB1, BNIPL, TNFAIP8L2, ZNF687, PSMB4, CGN, HORMAD1, ARNT, CERS2, GABPB2, PIP5K1A, RFX5, POGZ, TUFT1, CTSS, ANXA9, PSMD4, MIR554, FAM63A, TNFAIP8L2-SCNM1, PI4KB, SNX27	rs4512652-C	0.692555159014724	4E-9		0.019193487	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1737	chr1	151115786	151115787	rs187325802	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q21.3	NR	rs187325802-t	0.0048	2E-10		1.51	[1.33-1.71]	Affymetrix, Illumina [16201029] (imputed)	N
1737	chr1	151116278	151116279	rs6674970	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1q21.3	NR	rs6674970-?	NR	1E-6		0.0469	[0.028-0.066] unit increase	Illumina [at least 560000] (imputed)	N
1737	chr1	151117009	151117010	rs12089658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q21.3	SEMA6C	rs12089658-A	0.084125	4E-14		0.031876426	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1737	chr1	151122488	151122489	rs7554936	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q21.3	NR	rs7554936-G	NR	6E-6		0.009709	[0.0055-0.0139] unit decrease	Illumina [~ 540852]	N
1737	chr1	151122707	151122708	rs151132887	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs151132887-C	0.981748	8E-9		0.0438264	[0.029-0.059] unit decrease	NR [NR]	N
1738	chr1	151135854	151135855	rs12097169	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.3		rs12097169-A	0.1502	2E-7		0.0711	[0.044-0.098] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1738	chr1	151135854	151135855	rs12097169	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12097169-A	0.5599	1E-40		0.1521	[0.13-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1738	chr1	151143436	151143437	rs115287176	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	1q21.3	TMOD4	rs115287176-G	0.988	1E-28		33.333336		Illumina [up to 244000]	N
1738	chr1	151143436	151143437	rs115287176	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	1q21.3	TMOD4	rs115287176-G		9E-25		100.0		Illumina [31245]	N
1738	chr1	151143436	151143437	rs115287176	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	1q21.3	TMOD4	rs115287176-G	0.988	5E-7		1.8181818		Illumina [31276]	N
1738	chr1	151143436	151143437	rs115287176	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	1q21.3	TMOD4	rs115287176-G	0.988	1E-7		4.347826		Illumina [31514]	N
1738	chr1	151143436	151143437	rs115287176	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	1q21.3	TMOD4	rs115287176-G	0.088	9E-9		12.5		Illumina [31245]	N
1738	chr1	151168868	151168869	rs75933044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs75933044-G	NR	6E-11		0.0256	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1738	chr1	151168868	151168869	rs75933044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q21.3	NR	rs75933044-G	NR	7E-11		0.0256	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1738	chr1	151168868	151168869	rs75933044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.3	NR	rs75933044-G	NR	2E-9		0.0245	[0.016-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1738	chr1	151189411	151189412	rs61817974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q21.3		rs61817974-A	NR	8E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1738	chr1	151210291	151210292	rs75360998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs75360998-A	NR	1E-13		0.0676	[0.05-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1738	chr1	151240541	151240542	rs11204791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	PSMD4	rs11204791-G	NR	9E-9		0.0177329	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1738	chr1	151241908	151241909	rs35485741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs35485741-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1738	chr1	151250420	151250421	rs4971027	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q21.3		rs4971027-A	0.336	3E-16				Affymetrix [10369434] (imputed)	N
1739	chr1	151295060	151295061	rs5022636	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1q21.3	PI4KB	rs5022636-A	NR	2E-8	(POLYAMINSYN3-PWY_superpathway_of_polyamine_biosynthesis_II)	5.5952206	NR Z-score decrease	Illumina [8100000] (imputed)	N
1739	chr1	151337787	151337788	rs10788804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q21.3	SELENBP1	rs10788804-G	0.644837	5E-9		0.01388644	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1739	chr1	151341702	151341703	rs55906289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q21.3	SELENBP1	rs55906289-A	0.356058	3E-15		0.018425295	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1739	chr1	151341702	151341703	rs55906289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs55906289-G	0.655771	4E-13				Affymetrix, Illumina [22063850] (imputed)	N
1739	chr1	151344740	151344741	rs2769264	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs2769264-G	0.2108	6E-12	(PSMB4)	0.01332	NR unit decrease	Illumina [1671387] (imputed)	N
1739	chr1	151344740	151344741	rs2769264	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	1q21.3	PSMB4, POGZ, SELENBP1	rs2769264-G	NR	3E-20		0.313	[0.25-0.38] unit increase	Illumina [> 2500000] (imputed)	N
1739	chr1	151349173	151349174	rs17564336	34523676	Jager S	2021-09-15	Hum Mol Genet	Blood copper and risk of cardiometabolic diseases-A Mendelian randomization study.	Copper levels	6,937 European or unknown ancestry individuals	NA	1q21.3		rs17564336-T	0.298	2E-17				Illumina [NR] (imputed)	N
1739	chr1	151349173	151349174	rs17564336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q21.3		rs17564336-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1739	chr1	151349915	151349916	rs61818031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q21.3	NR	rs61818031-G	0.695629	6E-14		0.015326	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1739	chr1	151366493	151366494	rs4971040	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q21.3	NR	rs4971040-C	0.8411	2E-7		0.0084	[0.0053-0.0115] unit increase	NR [7666894] (imputed)	N
1739	chr1	151372137	151372138	rs7172	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs7172-G	0.2631	1E-12	(PSMB4)	0.01464	NR unit decrease	Illumina [1671387] (imputed)	N
1739	chr1	151386151	151386152	rs4971043	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs4971043-G	0.1742	2E-16	(PSMB4)	0.01781	NR unit decrease	Illumina [1671387] (imputed)	N
1740	chr1	151405207	151405208	rs71515781	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs71515781-T	0.101	1E-10	(PSMB4)	0.01762	NR unit decrease	Illumina [1671387] (imputed)	N
1740	chr1	151407692	151407693	rs11578888	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q21.3	NR	rs11578888-A	NR	3E-6		0.01259	[0.0073-0.0179] unit decrease	Illumina [~ 540852]	N
1740	chr1	151407974	151407974	rs60354484	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q21.3	POGZ	rs60354484-CT	0.6654	4E-8		0.1669	[0.11-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1740	chr1	151454162	151454163	rs139814818	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q21.3	POGZ	rs139814818-A	0.0262141071108015	2E-6	(G_Lactococcus_RNT)	0.680491	[0.4-0.96] unit increase	Illumina [7711310] (imputed)	N
1740	chr1	151468059	151468060	rs10127622	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs10127622-T	0.6925	1E-29		0.1952	[0.16-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1740	chr1	151502426	151502427	rs34834099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.3	NR	rs34834099-T	NR	2E-10		0.0325	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1740	chr1	151502426	151502427	rs34834099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q21.3	NR	rs34834099-T	NR	9E-11		0.0332	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1741	chr1	151556203	151556204	rs12035827	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	1q21.3		rs12035827-G	0.0016	6E-7		3.457	[2.056-5.815]	Affymetrix [7842171] (imputed)	N
1741	chr1	151588734	151588735	rs12122920	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.3	NR	rs12122920-G	0.8874	4E-10		0.0275	[0.019-0.036] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1741	chr1	151588734	151588735	rs12122920	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12122920-A	0.8846	6E-41		0.3355	[0.29-0.38] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1741	chr1	151588734	151588735	rs12122920	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12122920-A	0.8749	4E-73		0.3005	[0.27-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1741	chr1	151590205	151590206	rs12754706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs12754706-G	NR	8E-16		0.0544	[0.041-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1742	chr1	151690803	151690804	rs79100766	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q21.3		rs79100766-C	0.52	8E-9				NR [NR] (imputed)	N
1742	chr1	151690803	151690804	rs79100766	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q21.3		rs79100766-C	0.52	5E-10		0.009	% increase	NR [NR] (imputed)	N
1742	chr1	151721269	151721270	rs13376155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1q21.3		rs13376155-G	NR	6E-9		0.0751	[0.05-0.1] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1742	chr1	151735492	151735493	rs146246134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs146246134-T	NR	6E-10		0.1221	[0.083-0.161] unit increase	Affymetrix [9000000] (imputed)	N
1742	chr1	151738402	151738403	rs6664467	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1q21.3	OAZ3	rs6664467-G	0.863468	4E-8		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1742	chr1	151738402	151738403	rs6664467	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1q21.3	OAZ3	rs6664467-G	0.863468	9E-6		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1742	chr1	151738402	151738403	rs6664467	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1q21.3	OAZ3	rs6664467-A	NR	6E-6		0.12364371	[0.07-0.177] unit decrease	Affymetrix [9576485] (imputed)	N
1742	chr1	151744857	151744858	rs4845556	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q21.3		rs4845556-G	0.521	3E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1742	chr1	151750432	151750433	rs6679233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q21.3		rs6679233-C	NR	4E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1742	chr1	151750432	151750433	rs6679233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q21.3	TDRKH	rs6679233-C	0.320593	3E-9		0.014003981	[0.0094-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1742	chr1	151757586	151757587	rs11204887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q21.3		rs11204887-C	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1742	chr1	151759103	151759104	rs4845570	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q21.3	TDRKH	rs4845570-T	0.832	8E-11		0.058	[0.04-0.076] unit increase	Affymetrix [7947838] (imputed)	N
1742	chr1	151760521	151760522	rs541559418	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q21.3	TDRKH	rs541559418-A	NR	2E-10		1.215	[1.15-1.28]	Affymetrix [9000000] (imputed)	N
1742	chr1	151762107	151762108	rs868868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q21.3	NR	rs868868-T	0.341173	3E-11		0.012949	[0.0091-0.0168] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1742	chr1	151762307	151762308	rs11810571	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1q21.3	TDRKH	rs11810571-G	0.795971	1E-9		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1742	chr1	151762307	151762308	rs11810571	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1q21.3	TDRKH	rs11810571-G	0.77	4E-8		1.05	[1.02-1.09]	Illumina [5167567] (imputed)	N
1742	chr1	151762307	151762308	rs11810571	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q21.3	TDRKH	rs11810571-C	0.1939	2E-11		0.0553	[0.039-0.071] unit decrease	NR [8041861] (imputed)	N
1742	chr1	151762307	151762308	rs11810571	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1q21.3	TDRKH	rs11810571-G	0.787	4E-8		1.057	[1.036-1.079]	Affymetrix [9149595] (imputed)	N
1742	chr1	151763333	151763334	rs55875222	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs55875222-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1742	chr1	151763333	151763334	rs55875222	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs55875222-?	NR	5E-25				Affymetrix [~ 8270000] (imputed)	N
1742	chr1	151768047	151768048	rs11204892	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q21.3	TDRKH-AS1, LINGO4	rs11204892-?	NR	5E-12		0.0406126	[0.029-0.052] unit increase	Illumina [4804024] (imputed)	N
1742	chr1	151768047	151768048	rs11204892	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q21.3	LINGO4, TDRKH	rs11204892-A	0.1892	3E-11		0.0487	[0.034-0.063] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1742	chr1	151771828	151771829	rs33911740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs33911740-G	0.340352	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1742	chr1	151777650	151777651	rs2293088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q21.3	LINGO4	rs2293088-A	0.334177	7E-11		0.015302266	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1742	chr1	151777650	151777651	rs2293088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q21.3		rs2293088-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1743	chr1	151784546	151784547	rs1521186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1q21.3		rs1521186-A	NR	1E-9		0.1186	[0.08-0.157] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
1743	chr1	151784546	151784547	rs1521186	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1q21.3	NR	rs1521186-G	0.55	8E-9		0.91	[NR]	NR [8546065] (imputed)	N
1743	chr1	151784546	151784547	rs1521186	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1q21.3	NR	rs1521186-G	0.55	8E-9		0.91	NR	NR [8546065] (imputed)	N
1743	chr1	151786280	151786281	rs3828058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs3828058-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151786280	151786281	rs3828058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs3828058-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151786280	151786281	rs3828058	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	LINGO4, MRPL9, OAZ3, RORC, TDRKH	rs3828058-A	0.374054	1E-12		1.048272	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
1743	chr1	151786371	151786372	rs3790515	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	1q21.3	RORC	rs3790515-T	0.08	3E-7		0.79	[0.54-1.04] unit increase	Illumina [NR] (imputed)	N
1743	chr1	151796741	151796742	rs11204896	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q21.3	RORC	rs11204896-C	0.9	2E-12		1.063	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs4845604-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs4845604-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q21.3	NR	rs4845604-G	0.8595	5E-21		1.0864842	[1.07-1.1]	Affymetrix [15688218] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q21.3	NR	rs4845604-?	NR	3E-8	(conditional)			Affymetrix [15688218] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q21.3	RORC	rs4845604-?	NR	2E-16		1.092	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q21.3	RORC	rs4845604-G	NR	3E-14		1.077	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q21.3		rs4845604-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs4845604-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1q21.3	RORC	rs4845604-?		2E-11				Illumina [9578670] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q21.3	RORC	rs4845604-?	NR	7E-14				Illumina [9725440] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q21.3	RORC	rs4845604-?		6E-7				Illumina [9560910] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q21.3	RORC	rs4845604-?	NR	2E-16	(subset analysis)			Illumina [130052]	N
1743	chr1	151801679	151801680	rs4845604	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q21.3	NR	rs4845604-G	0.85	1E-18	(EA)	1.1778549		Affymetrix, Illumina [~ 9000000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q21.3	NR	rs4845604-G	0.85	1E-17	(EA)	1.1315535		Affymetrix, Illumina [~ 9000000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q21.3	NR	rs4845604-G	0.85	1E-7	(EA)	1.0955864	[1.06-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1743	chr1	151801679	151801680	rs4845604	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q21.3	RORC	rs4845604-G	0.857	4E-16		1.144	[1.098-1.192]	Affymetrix, Illumina [1230000] (imputed)	N
1743	chr1	151802392	151802393	rs71625139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs71625139-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151802392	151802393	rs71625139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs71625139-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1743	chr1	151803046	151803047	rs79597994	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	1q21.3	NR	rs79597994-C		4E-6		0.5831	[0.33-0.83] SD units increase	NR [10700000] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q21.3		rs17582155-A	NR	2E-25		0.2017	[0.16-0.24] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	1q21.3		rs17582155-?	NR	1E-10		0.103518	[0.07-0.137] unit decrease	NR [9800000] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	1q21.3		rs17582155-?	NR	2E-10		0.107278	[0.075-0.14] unit decrease	NR [9800000] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	1q21.3		rs17582155-?	NR	9E-43		0.238097	[0.2-0.27] unit increase	NR [9800000] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1q21.3		rs17582155-?	NR	2E-9		0.104897	[0.072-0.138] unit increase	NR [9800000] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q21.3	RORC	rs17582155-G	0.996738	5E-37		0.057385	[0.049-0.066] unit decrease	Affymetrix [13995440] (imputed)	N
1743	chr1	151804212	151804213	rs17582155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs17582155-A	NR	2E-25		0.2292	[0.19-0.27] unit increase	Affymetrix [9000000] (imputed)	N
1743	chr1	151805014	151805015	rs12128071	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1q21.3		rs12128071-?	NR	3E-6		1.10158	[1.06-1.14]	NR [685523]	N
1743	chr1	151805014	151805015	rs12128071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs12128071-A	NR	1E-17		0.042	[0.032-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1743	chr1	151821429	151821430	rs116276359	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q21.3	THEM5	rs116276359-A	0.030591	4E-8		0.043277	[0.028-0.059] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1743	chr1	151827812	151827813	rs4845624	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs4845624-A	0.8135	5E-10		0.1262	[0.087-0.166] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1743	chr1	151827812	151827813	rs4845624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.3	NR	rs4845624-G	0.814388	4E-16		0.143643	[0.11-0.18] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1743	chr1	151838091	151838092	rs7541453	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q21.3	THEM5, THEM4	rs7541453-C	0.359534	2E-16	(indoleacetylglutamine)	0.176	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1743	chr1	151838091	151838092	rs7541453	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	1q21.3	THEM5, THEM4	rs7541453-C	0.359534	2E-16	(indoleacetylglutamine)	0.176	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1743	chr1	151839837	151839838	rs12566232	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1q21.3	THEM4	rs12566232-A	0.71	6E-19	(X-13431--nonanoylcarnitine)	0.045	[0.035-0.055] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1743	chr1	151858887	151858888	rs6685187	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1q21.3	THEM4	rs6685187-A	0.41	3E-26	(X12442--5,8-tetradecadienoate)	0.043	unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1743	chr1	151862660	151862661	rs1060870	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q21.3	THEM4	rs1060870-G	0.335089	1E-15	(3-hydroxyoctanoate)	0.192	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1743	chr1	151862660	151862661	rs1060870	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q21.3	THEM4	rs1060870-G	0.335089	1E-11	(3-hydroxylaurate)	0.163	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
1743	chr1	151867559	151867560	rs3762427	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	1q21.3	THEM4, THEM5	rs3762427-?		2E-6	(EA)	0.4158	[0.25-0.59] unit increase	Affymetrix [NR] (imputed)	N
1743	chr1	151879760	151879761	rs28415528	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	1q21.3	THEM4	rs28415528-A	NR	4E-9	(Nonanoylcarnitine)	0.224275	[0.15-0.3] unit increase	Illumina [up to 9281895] (imputed)	N
1743	chr1	151882855	151882856	rs10788817	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	1q21.3	THEM4	rs10788817-G	0.54	3E-13	(3-hydroxydecanoate)	0.11	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1743	chr1	151895092	151895093	rs10788819	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	AL450992.4	rs10788819-T	NR	2E-8				Illumina [~ 1000000] (imputed)	N
1743	chr1	151897376	151897377	rs3007711	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	1q21.3	intergenic	rs3007711-?	NR	9E-6	(SCL)	0.051	[0.027-0.075] unit decrease	Illumina [527829]	N
1743	chr1	151907172	151907173	rs10494270	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	1q21.3	THEM4	rs10494270-A	0.7153	5E-13	(Nonaylcarnitine)	0.0687	[0.05-0.087] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1743	chr1	151909811	151909812	rs72694845	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q21.3	NR	rs72694845-A	0.969659	2E-12		0.0169063	[0.012-0.022] unit increase	Affymetrix [16582909] (imputed)	N
1743	chr1	151909811	151909812	rs72694845	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q21.3	NR	rs72694845-A	0.969659	2E-11		0.0180871	[0.013-0.023] unit increase	Affymetrix [16582965] (imputed)	N
1743	chr1	151910048	151910049	rs111623044	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	1q21.3		rs111623044-?	NR	2E-6		0.016	[0.0093-0.0227] unit decrease	Illumina [7533529] (imputed)	N
1744	chr1	151916750	151916751	rs1490191	30120336	Kikuchi M	2018-08-17	Sci Rep	Genome-wide Association Analysis of Eye Movement Dysfunction in Schizophrenia.	Eye movement in schizophrenia (horizontal position gain)	60 Japanese ancestry cases	NA	1q21.3	THEM4	rs1490191-?	NR	7E-9		0.1379	unit decrease	Affymetrix [554152]	N
1744	chr1	151916750	151916751	rs1490191	30120336	Kikuchi M	2018-08-17	Sci Rep	Genome-wide Association Analysis of Eye Movement Dysfunction in Schizophrenia.	Eye movement (horizontal position gain)	60 Japanese ancestry schizophrenia cases, 166 Japanese ancestry controls	NA	1q21.3	THEM4	rs1490191-?	NR	7E-9		0.0934	[NR] unit decrease	Affymetrix [554152]	N
1744	chr1	151917114	151917115	rs9943251	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q21.3	THEM4, S100A10	rs9943251-G	0.76299	1E-30	(3-hydroxydecanoate)	0.309	[0.26-0.36] unit increase	Illumina [13039987] (imputed)	N
1744	chr1	151917392	151917393	rs2279501	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q21.3	THEM4, S100A10	rs2279501-G	0.326033	3E-14	(3-hydroxysebacate)	0.178	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1744	chr1	151930644	151930645	rs6693388	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	1q21.3	THEM4	rs6693388-T	0.69	4E-38	(linoleate (18:2n6)/X-12442--5,8-tetradecadienoate)	0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1744	chr1	151939863	151939864	rs6657658	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	1q21.3	THEM4, S100A10	rs6657658-C	NR	1E-12	(Decadienoylcarnitine/Glutarylcarnitine)	0.304258	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1744	chr1	151955229	151955230	rs6587640	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	1q21.3	S100A10	rs6587640-T	NR	9E-9	(Decadienoylcarnitine)	0.248976	[0.16-0.33] unit increase	Illumina [up to 9281895] (imputed)	N
1744	chr1	151964934	151964935	rs41265236	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (observational)	2,225 European ancestry individuals	NA	1q21.3		rs41265236-?	NR	2E-10		0.1859	[0.13-0.24] unit decrease	Illumina [7533529] (imputed)	N
1744	chr1	151970628	151970629	rs61814883	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q21.3	S100A10	rs61814883-A	0.299364986404266	2E-10		0.0037215	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1744	chr1	151973799	151973800	rs4845725	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	1q21.3	LOC105371441	rs4845725-?		4E-6		3.8	[2.15-6.71]	Illumina [NR] (imputed)	N
1744	chr1	152000116	152000117	rs115288876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs115288876-A	NR	3E-41		0.0829	[0.071-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1744	chr1	152000116	152000117	rs115288876	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs115288876-?	NR	2E-56		0.0788065	[0.069-0.089] unit increase	NR [6912294] (imputed)	N
1744	chr1	152000116	152000117	rs115288876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs115288876-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1744	chr1	152000116	152000117	rs115288876	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q21.3	S100A11, TCHHL1	rs115288876-?	NR	2E-8		1.15	[1.09-1.21]	Affymetrix [74888535] (imputed)	N
1744	chr1	152000116	152000117	rs115288876	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1q21.3	NR	rs115288876-?	NR	1E-8		0.1687	[0.11-0.23] unit increase	Illumina [at least 560000] (imputed)	N
1744	chr1	152006026	152006027	rs78914480	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	1q21.3		rs78914480-A	0.014657419	8E-11		2.400272	[1.843869165-3.124573471]	Illumina [8919992] (imputed)	N
1744	chr1	152027014	152027015	rs12130862	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	1q21.3	NR	rs12130862-?		9E-9		0.016	[0.01-0.022] unit decrease	Illumina [7533529] (imputed)	N
1744	chr1	152029547	152029548	rs115045402	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q21.3	S100A11, TCHHL1	rs115045402-A	0.028	2E-15		0.123	[0.094-0.152] unit decrease	NR [NR] (imputed)	N
1744	chr1	152029547	152029548	rs115045402	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q21.3	S100A11, TCHHL1	rs115045402-A	0.028	2E-47		0.202	[0.17-0.23] unit decrease	NR [7647814] (imputed)	N
1744	chr1	152029547	152029548	rs115045402	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs115045402-A	0.026334	3E-55		0.10713	[0.094-0.121] unit increase	Affymetrix [16668957] (imputed)	N
1744	chr1	152029547	152029548	rs115045402	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q21.3	S100A11, TCHHL1	rs115045402-A	NR	2E-20		1.249	[1.2-1.3]	Affymetrix [9000000] (imputed)	N
1744	chr1	152037514	152037515	rs3124314	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	AL591893.2	rs3124314-T	NR	4E-6				Illumina [~ 1000000] (imputed)	N
1745	chr1	152062766	152062767	rs17646946	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q21.3	TCHH	rs17646946-A	0.20	2E-42	(hair curl)	0.29	[NR] unit decrease	Illumina [535076]	N
1745	chr1	152074115	152074116	rs12122629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1q21.3		rs12122629-C	NR	6E-12		0.1381	[0.099-0.177] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1745	chr1	152074115	152074116	rs12122629	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q21.3	NR	rs12122629-C	0.04184	8E-25		1.16	[1.129-1.192]	Affymetrix [15688218] (imputed)	N
1745	chr1	152074115	152074116	rs12122629	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q21.3	NR	rs12122629-C	0.04184	1E-24		1.146	[1.118-1.176]	Affymetrix [15688218] (imputed)	N
1745	chr1	152074115	152074116	rs12122629	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q21.3	Intergenic	rs12122629-C	NR	4E-6		0.0362438	[0.021-0.052] unit increase	Illumina [13520550] (imputed)	N
1745	chr1	152074115	152074116	rs12122629	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q21.3	Intergenic	rs12122629-C	NR	3E-7		0.0465576	[0.029-0.064] unit increase	Illumina [13520550] (imputed)	N
1745	chr1	152079313	152079314	rs9050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs9050-A	NR	1E-17		0.0421	[0.032-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1745	chr1	152083324	152083325	rs11803731	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (observational)	2,225 European ancestry individuals	NA	1q21.3	NR	rs11803731-A		2E-17		0.2351	[0.18-0.29] unit decrease	Illumina [7533529] (imputed)	N
1745	chr1	152083324	152083325	rs11803731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q21.3		rs11803731-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1745	chr1	152083324	152083325	rs11803731	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	1q21.3	TCHHL1	rs11803731-T	0.177964721	2E-82	(EA)	0.23	[0.21-0.25] unit decrease	Illumina [up to 9350000] (imputed)	N
1745	chr1	152083324	152083325	rs11803731	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	1q21.3	TCHH	rs11803731-?	NR	3E-12				Illumina [9143600] (imputed)	N
1745	chr1	152083324	152083325	rs11803731	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	TCHH	rs11803731-A	0.82	3E-31		6.11	[NR] % variance	Illumina [~ 1000000] (imputed)	N
1745	chr1	152088843	152088844	rs36010924	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q21.3	NR	rs36010924-G	0.185526	2E-53		0.0601561	[0.052-0.068] unit increase	NR [19129689] (imputed)	N
1745	chr1	152098427	152098428	rs140371183	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs140371183-A	0.967821	5E-53		0.085	[0.073-0.097] unit increase	NR [7250403] (imputed)	N
1745	chr1	152118216	152118217	rs12144907	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	1q21.3	TCHHL1	rs12144907-C	0.175555886	2E-152		0.22952381	[0.21-0.25] unit decrease	Illumina [up to 9350000] (imputed)	N
1745	chr1	152118216	152118217	rs12144907	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q21.3	FLG, HRNR, LOC100131107, RPTN, S100A11, TCHH, TCHHL1	rs12144907-C	NR	1E-10		0.0518646	NR unit increase	NR [NR] (imputed)	N
1745	chr1	152120300	152120301	rs1427297901	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	1q21.3		rs1427297901-?	NR	2E-12		0.41	[0.32-0.52]	Illumina [9900441] (imputed)	N
1745	chr1	152129093	152129094	rs76015112	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	1q21.3	RPTN	rs76015112-G	0.21440000000000003	8E-12		0.2965	[-0.07257-0.66557]	Illumina [281811]	N
1745	chr1	152129093	152129094	rs76015112	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	1q21.3	RPTN	rs76015112-G	0.2144	4E-9				Illumina [281811]	N
1745	chr1	152129093	152129094	rs76015112	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	1q21.3	RPTN	rs76015112-?		8E-23		0.3	[0.2-0.4]	Illumina [NR] (imputed)	N
1745	chr1	152136229	152136230	rs4845418	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	1q21.3	NR	rs4845418-?		2E-6		0.015	[0.0086-0.0214] unit decrease	Illumina [7533529] (imputed)	N
1745	chr1	152140015	152140016	rs1496036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.3	NR	rs1496036-?	NR	4E-6				Affymetrix [NR]	N
1745	chr1	152149257	152149258	rs1908638	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs1908638-A	0.6044	1E-6		0.0771	[0.046-0.108] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1745	chr1	152162105	152162106	rs12130219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs12130219-G	NR	4E-12		0.0198	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1745	chr1	152162105	152162106	rs12130219	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	FLG-AS1	rs12130219-?	NR	1E-23	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1745	chr1	152168739	152168740	rs55879323	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	FLG-AS1	rs55879323-?	NR	3E-12	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
1745	chr1	152171460	152171461	rs1552994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs1552994-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1745	chr1	152171460	152171461	rs1552994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs1552994-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152175154	152175155	rs11588970	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs11588970-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1q21.3		rs12123821-T	0.0438	4E-85		1.69		Affymetrix, Illumina [9397031] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	1q21.3		rs12123821-T	NR	1E-14		0.1696	[0.13-0.21] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	1q21.3		rs12123821-T	NR	6E-9		0.1534	[0.1-0.21] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1q21.3		rs12123821-T	NR	7E-15		0.1648	[0.12-0.21] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	1q21.3		rs12123821-T	0.047	6E-26		0.227	[0.18-0.27] unit decrease	Affymetrix [812428]	N
1746	chr1	152179151	152179152	rs12123821	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1q21.3		rs12123821-?	NR	2E-6		1.12476	[1.08-1.17]	NR [685523]	N
1746	chr1	152179151	152179152	rs12123821	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q21.3	RPTN, HRNR	rs12123821-T	0.051	6E-19		0.092	[0.072-0.112] unit decrease	NR [NR] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q21.3	HRNR, RPTN	rs12123821-T	0.051	3E-48		0.138	[0.12-0.16] unit decrease	NR [7647814] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs12123821-C	0.952473	3E-63		0.077	[0.067-0.087] unit increase	NR [7250403] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs12123821-T	0.04793	2E-59		0.074472	[0.065-0.083] unit increase	Affymetrix [16668957] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1q21.3	HRNR, RPTN, TCHH, FLG, FLG-AS1, TCHHL1	rs12123821-T	0.04817	2E-21		1.15003	[1.12-1.18]	Affymetrix [32463443] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs12123821-?	NR	2E-34				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs12123821-?	NR	4E-55				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	C2CD4D, CRCT1, CRNN, FLG, FLG-AS1, FLG2, HRNR, LCE3A, LCE3B, LCE3C, LCE3D, LCE3E, LCE5A, LINGO4, LOC100132111, MRPL9, NBPF18P, OAZ3, RIIAD1, RORC, RPTN, S100A10, S100A11, TCHH, TCHHL1, TDRKH, THEM4, THEM5	rs12123821-T	0.048196	1E-25		1.1644548	[1.14-1.19]	Affymetrix [8274727] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q21.3	FLG	rs12123821-T	0.04811	2E-27				Affymetrix [15688218] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	1q21.3	RP11-107M16.2	rs12123821-T	0.0470148	6E-9		0.1533928	[0.1-0.21] unit increase	Affymetrix [7288503] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	1q21.3	RP11-107M16.2	rs12123821-T	0.0472779	7E-15		0.16483685	[0.12-0.21] unit increase	Affymetrix [7288503] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	1q21.3	RPTN, HRNR	rs12123821-T	0.046	8E-24		1.264	[1.22-1.31]	Affymetrix [9000000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q21.3	RPTN, HRNR	rs12123821-?	NR	8E-48		1.307	[1.27-1.34]	Affymetrix [9000000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q21.3	RPTN, HRNR	rs12123821-T	NR	4E-24		1.177	[1.15-1.21]	Affymetrix [9000000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q21.3		rs12123821-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q21.3	RPTN, HRNR	rs12123821-T	0.05	7E-17		1.111	[1.09-1.14]	Affymetrix, Illumina [8307659] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1q21.3	NR	rs12123821-?	NR	8E-9		0.1896	[0.12-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q21.3	Intergenic	rs12123821-T	NR	6E-7		0.0411986	[0.025-0.057] unit increase	Illumina [13520550] (imputed)	N
1746	chr1	152179151	152179152	rs12123821	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q21.3	RPTN, HRNR	rs12123821-T	0.053	3E-8		0.0533409	[0.035-0.072] unit increase	Illumina [13520550] (imputed)	N
1746	chr1	152187901	152187902	rs201561609	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs201561609-T	0.986941	7E-28		0.129276	[0.11-0.15] unit decrease	Affymetrix [16668957] (imputed)	N
1746	chr1	152192455	152192456	rs145282902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs145282902-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152201386	152201387	rs187068709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	1q21.3		rs187068709-T	0.014263917	1E-18		0.9823216	[0.76-1.2] unit increase	Illumina [13428180] (imputed)	N
1746	chr1	152238687	152238688	rs61815526	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	1q21.3		rs61815526-A	0.155271	3E-7		1.1317339	NR	Affymetrix [7846216] (imputed)	N
1746	chr1	152249020	152249021	rs185433896	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs185433896-A	0.993156	2E-38		0.245785	[0.21-0.28] unit decrease	Affymetrix [16668957] (imputed)	N
1746	chr1	152254151	152254152	rs189918701	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs189918701-G	0.997322	2E-16		0.237546	[0.18-0.29] unit decrease	Affymetrix [16668957] (imputed)	N
1746	chr1	152255771	152255772	rs375984409	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs375984409-G	0.991891	3E-38		0.228513	[0.19-0.26] unit decrease	Affymetrix [16668957] (imputed)	N
1746	chr1	152270874	152270875	rs144613541	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs144613541-G	0.290985	6E-12		0.015413	[0.011-0.02] unit increase	Affymetrix [16668957] (imputed)	N
1746	chr1	152271218	152271219	rs61815559	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q21.3	NR	rs61815559-T	0.03183	3E-19		1.16	[1.125-1.197]	Affymetrix [15688218] (imputed)	N
1746	chr1	152271218	152271219	rs61815559	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	1q21.3	TCHH, FLG	rs61815559-T	0.0337	1E-64		1.894	[1.764-2.033]	Affymetrix [15688218] (imputed)	N
1746	chr1	152277621	152277622	rs150597413	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	1q21.3		rs150597413-?	NR	2E-11		0.114782	[0.081-0.148] unit increase	NR [9800000] (imputed)	N
1746	chr1	152277621	152277622	rs150597413	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs150597413-T	0.004002	6E-11		0.104852	[0.073-0.136] unit increase	Affymetrix [16668957] (imputed)	N
1746	chr1	152277621	152277622	rs150597413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs150597413-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1q21.3		rs138726443-A	0.004	2E-23		2.18		Affymetrix, Illumina [9397031] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	1q21.3		rs138726443-?	NR	2E-14		0.119252	[0.087-0.151] unit increase	NR [9800000] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs138726443-A	NR	6E-16		0.1451	[0.11-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs138726443-A	0.00482	9E-15		0.11212	[0.084-0.14] unit increase	Affymetrix [16668957] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs138726443-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152280022	152280023	rs138726443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs138726443-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152285076	152285080	rs558269137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	1q21.3		rs558269137-C	NR	1E-18		1.0276	[0.8-1.26] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1746	chr1	152285076	152285080	rs558269137	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q21.3	NR	rs558269137-cactg	0.9927	3E-44		0.5	[0.45-0.55]	Affymetrix, Illumina [16201029] (imputed)	N
1746	chr1	152285076	152285080	rs558269137	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1q21.3	FLG	rs558269137-C	0.0215073922483962	7E-23		0.28766203	[0.23-0.34] unit increase	Affymetrix [35186738] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1q21.3		rs61816761-A	0.0183	4E-118		2.62		Affymetrix, Illumina [9397031] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Metal allergy	2,409 European ancestry cases, 350,904 European ancestry controls, 278 East Asian ancestry cases, 161,777 East Asian ancestry controls	NA	1q21.3		rs61816761-A	NR	3E-12		0.767	[0.55-0.98] unit increase	Affymetrix, Illumina [20456616] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Contact dermatitis	3,691 European ancestry cases, 475,075 European ancestry controls, 247 East Asian ancestry cases, 161,777 East Asian ancestry controls	NA	1q21.3		rs61816761-A	NR	3E-12		0.7356	[0.53-0.94] unit increase	Affymetrix, Illumina [25842533] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q21.3	FLG	rs61816761-A	0.026	5E-82		0.266	[0.24-0.29] unit decrease	NR [NR] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q21.3	FLG	rs61816761-A	0.026	3E-82		0.266	[0.24-0.29] unit decrease	NR [7647814] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q21.3	FLG	rs61816761-A	0.02	8E-35				NR [> 9500000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q21.3	FLG	rs61816761-A	0.021526000000000045	4E-39		1.3312707	[1.27545914364867-1.38952433420026]	NR [9572556] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs61816761-G	0.984074	3E-53		0.122	[0.11-0.14] unit increase	NR [7250403] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs61816761-A	0.023096	9E-74		0.125479	[0.11-0.14] unit increase	Affymetrix [16668957] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1q21.3	FLG, FLG-AS1, FLG2, HRNR, CRNN, RPTN	rs61816761-A	0.02344	1E-22		1.23696	[1.19-1.29]	Affymetrix [32463443] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs61816761-?	NR	2E-48				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs61816761-?	NR	4E-73				Affymetrix [~ 8270000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	RORC, RPTN, S100A10, S100A11, TCHH, TCHHL1, THEM4, THEM5, C1orf68, C2CD4D, CRCT1, CRNN, FLG, FLG-AS1, FLG2, HRNR, KPRP, LCE1C, LCE1D, LCE1E, LCE1F, LCE2A, LCE2B, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3D, LCE3E, LCE4A, LCE5A, LOC100132111, NBPF18P	rs61816761-A	0.023383	5E-27		1.2637291	[1.22-1.31]	Affymetrix [8274727] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	1q21.3	FLG, HRNR, FLG2	rs61816761-A	0.024	2E-65		1.97	[1.823-2.129]	Affymetrix [10894596] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	1q21.3	FLG, HRNR, FLG2	rs61816761-A	0.024	8E-27		4.571	[3.74-5.41] unit decrease	Affymetrix [10894596] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q21.3	FLG	rs61816761-A	NR	1E-30		1.323	[1.28-1.37]	Affymetrix [9000000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1q21.3		rs61816761-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q21.3		rs61816761-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs61816761-?	NR	8E-46				NR [~ 8900000] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	1q21.3	FLG	rs61816761-A	0.0237	1E-8		1.36	[1.22-1.51]	Affymetrix [33771858] (imputed)	N
1746	chr1	152285860	152285861	rs61816761	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q21.3	FLG	rs61816761-A	0.01	7E-21		1.224	[1.18-1.27]	Affymetrix, Illumina [8307659] (imputed)	N
1746	chr1	152300816	152300817	rs3126085	21666691	Sun LD	2011-06-13	Nat Genet	Genome-wide association study identifies two new susceptibility loci for atopic dermatitis in the Chinese Han population.	Atopic dermatitis	1,012 Han Chinese ancestry cases, 1,362 Han Chinese ancestry controls	3,624 Han Chinese ancestry cases, 12,197 Han Chinese ancestry controls, 1,806 European ancestry cases, 3,256 European ancestry controls	1q21.3	FLG	rs3126085-A	0.58	6E-12		1.22	[NR]	Illumina [491905]	N
1746	chr1	152301575	152301576	rs1933064	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs1933064-G	0.53039	3E-15		0.016	[0.012-0.02] unit increase	NR [7250403] (imputed)	N
1747	chr1	152308970	152308971	rs61816764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs61816764-T	NR	3E-19		0.0469	[0.037-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1747	chr1	152316589	152316590	rs3120665	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	1q21.3	intergenic	rs3120665-G	0.16	4E-6	(Novelty Seeking)	0.14	[NR] unit decrease	Affymetrix, Illumina [1252387] (imputed)	N
1747	chr1	152318160	152318161	rs3120667	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	1q21.3	FLG, FLG2, CRNN	rs3120667-A	0.845	2E-6		0.118	[0.069-0.167] unit decrease	Illumina [6150213] (imputed)	N
1747	chr1	152319571	152319572	rs61816766	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q21.3	C1orf68, CRCT1, CRNN, FLG, FLG-AS1, FLG2, HRNR, LCE2A, LCE2B, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3D, LCE3E, LCE4A, LCE5A, NBPF18P, RPTN, S100A11, TCHH, TCHHL1	rs61816766-?	NR	5E-12		1.14		NR [74888535] (imputed)	N
1747	chr1	152319571	152319572	rs61816766	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q21.3	C1orf68, CRCT1, CRNN, FLG, FLG-AS1, FLG2, HRNR, LCE2A, LCE2B, LCE2C, LCE2D, LCE3A, LCE3B, LCE3C, LCE3D, LCE3E, LCE4A, LCE5A, NBPF18P, RPTN, S100A11, TCHH, TCHHL1	rs61816766-?	NR	3E-11		1.21	[1.14-1.28]	Affymetrix [74888535] (imputed)	N
1747	chr1	152329528	152329529	rs76285340	33069728	Pu W	2020-10-15	J Invest Dermatol	Exome-wide association analysis suggests LRP2BP as a susceptibility gene for endothelial injury in systemic sclerosis in Han Chinese population.	Systemic sclerosis	527 Han Chinese ancestry cases, 5,024 Han Chinese ancestry controls	479 Han Chinese ancestry cases, 1,096 Han Chinese ancestry controls	1q21.3	FLG2	rs76285340-T	0.0077	2E-11		3.3	[2.30-4.74]	Illumina [84228]	N
1747	chr1	152356092	152356093	rs189163698	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	1q21.3		rs189163698-?	NR	4E-20		2.23	[1.88-2.65]	Illumina [9900441] (imputed)	N
1747	chr1	152390762	152390763	rs576242124	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs576242124-A	0.011317	3E-15		0.114432	[0.086-0.143] unit increase	Affymetrix [16668957] (imputed)	N
1747	chr1	152412327	152412328	rs78886843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs78886843-T	NR	1E-11		0.0324	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1747	chr1	152431930	152431931	rs12089980	34155719	Margaritte-Jeannin P	2021-06-22	Clin Exp Allergy	Identification of OCA2 as a novel locus for the co-morbidity of asthma-plus-eczema.	Asthma and eczema	1,208 European ancestry cases with both asthma and eczema, 7,599 European ancestry controls with neither asthma nor eczema	NA	1q21.3	CRNN, LCE5A	rs12089980-T	0.086	2E-6		0.381	[0.22-0.54] unit increase	Illumina [NR] (imputed)	N
1748	chr1	152440175	152440176	rs11205006	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q21.3	Intergenic	rs11205006-T	NR	2E-7		0.0217038	[0.014-0.03] unit decrease	Illumina [13520550] (imputed)	N
1748	chr1	152440175	152440176	rs11205006	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	1q21.3	FLG	rs11205006-A	NR	2E-25		1.615	[1.543-1.691]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1748	chr1	152440909	152440910	rs12144049	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs12144049-?	NR	7E-50		0.033555	[0.029-0.038] unit increase	NR [6912294] (imputed)	N
1748	chr1	152440909	152440910	rs12144049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs12144049-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1748	chr1	152440909	152440910	rs12144049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs12144049-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
1748	chr1	152440909	152440910	rs12144049	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	1q21.3	EDC	rs12144049-C	0.279	1E-16		1.39	[NR]	Affymetrix [1623390] (imputed)	N
1748	chr1	152440909	152440910	rs12144049	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	RP1-91G5.3	rs12144049-?	NR	3E-30	(Atopic dermatitis)	1.54	[1.37-1.73]	Affymetrix, Illumina [~ 5200000]	N
1748	chr1	152441365	152441366	rs12081541	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	1q21.3	CRNN, LCE5A, FLG	rs12081541-C	0.091	9E-11		1.61	[1.41-1.89]	Affymetrix, Illumina [1633153] (imputed)	N
1748	chr1	152442288	152442289	rs6661961	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	1q21.3	FLG	rs6661961-T	NR	9E-11		0.338	[0.24-0.44] unit increase	Illumina [2406139] (imputed)	N
1748	chr1	152445620	152445621	rs4845774	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	CRCT1, CRNN, FLG, FLG-AS1, FLG2, HRNR, LCE5A	rs4845774-T	0.427978	2E-8		1.0353843	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
1748	chr1	152448097	152448098	rs12731336	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1q21.3		rs12731336-?	NR	5E-6		1.12049	[1.07-1.17]	NR [685523]	N
1748	chr1	152448097	152448098	rs12731336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs12731336-G	NR	1E-40		0.0797	[0.068-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1748	chr1	152448097	152448098	rs12731336	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q21.3	Intergenic	rs12731336-G	NR	4E-6		0.041638	[0.024-0.059] unit decrease	Illumina [13520550] (imputed)	N
1748	chr1	152454254	152454255	rs471144	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	RP1-91G5.3, LCE5A	rs471144-?	NR	2E-12	(Atopic dermatitis)	1.54	[1.37-1.73]	Affymetrix, Illumina [~ 5200000]	N
1748	chr1	152454590	152454591	rs908922	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	1q21.3	LCE5A	rs908922-A	NR	4E-6				Illumina [~ 1000000] (imputed)	N
1748	chr1	152459746	152459747	rs1199156	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs1199156-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1748	chr1	152484259	152484260	rs56169785	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LCE5A	rs56169785-?	NR	6E-11	(female)	0.697635	[NR] unit increase	Affymetrix [NR] (imputed)	N
1748	chr1	152487916	152487917	rs73004856	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	CRCT1	rs73004856-A	0.024	3E-6	(NEFA )	0.02	[NR] mmol/L increase	Illumina [899892]	N
1748	chr1	152492558	152492559	rs4845783	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	1q21.3	CRCT1	rs4845783-?	NR	6E-6				Affymetrix, Illumina [> 2000000] (imputed)	N
1748	chr1	152493153	152493154	rs499697	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q21.3	LCE3E	rs499697-G	0.29	1E-10	(hair curl)	0.13	[NR] unit increase	Illumina [535076]	N
1748	chr1	152506443	152506444	rs6692209	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1q21.3	CRCT1, LCE3E	rs6692209-T	0.62	5E-9		1.08	[1.06-1.09] unit increase	Illumina [at least 560000] (imputed)	N
1748	chr1	152532741	152532742	rs10888499	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	LCE3E	rs10888499-?	NR	5E-25	(Atopic dermatitis)	1.49	[1.38-1.61]	Affymetrix, Illumina [~ 5200000]	N
1748	chr1	152536649	152536650	rs61813875	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs61813875-?	NR	1E-35		0.0821291	[0.069-0.095] unit increase	NR [6912294] (imputed)	N
1748	chr1	152536649	152536650	rs61813875	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	1q21.3	CRCT1, LCE3E, FLG	rs61813875-G	0.02	6E-29	(EA, fixed effects)	1.61	[1.48-1.75]	Illumina [15539996] (imputed)	N
1748	chr1	152537953	152537954	rs10888501	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1q21.3	LCE3D, LCE3E	rs10888501-?		6E-13		1.16	[1.14-1.20]	Illumina [87827]	N
1748	chr1	152537953	152537954	rs10888501	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	1q21.3	intergenic	rs10888501-?	NR	1E-6	(olanzapine)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
1748	chr1	152541061	152541062	rs72700982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs72700982-C	NR	9E-16		0.0479	[0.036-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1748	chr1	152550017	152550018	rs4085613	19169255	Zhang XJ	2009-01-25	Nat Genet	Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.	Psoriasis	1,139 Han Chinese ancestry cases, 1,132 Han Chinese ancestry controls	5,721 Chinese ancestry cases, 7,340 Chinese ancestry controls	1q21.3	LCE3D, LCE3A	rs4085613-A	0.43	7E-30		1.32	[1.25-1.39]	Illumina [494902]	N
1748	chr1	152551275	152551276	rs4112788	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	1q21.3	LCE3D	rs4112788-?	NR	3E-10		1.29	[1.19-1.40]	Illumina [535475]	N
1749	chr1	152590186	152590187	rs6677595	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs6677595-T	NR	1E-13		1.08	NR	NR [8016731] (imputed)	N
1749	chr1	152590186	152590187	rs6677595	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA		LCE3D, LCE3B	rs6677595-T	0.64	2E-33		1.26		Illumina [111236] (imputed)	N
1749	chr1	152590662	152590663	rs6693105	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q21.3	LCE3B	rs6693105-?	NR	4E-24	(subset analysis)			Illumina [130052]	N
1749	chr1	152592183	152592184	rs4845454	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	1q21.3	LCE3A	rs4845454-T	NR	4E-12		1.164	NR	Illumina [up to 11532644] (imputed)	N
1749	chr1	152592280	152592281	rs1581803	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	LCE3A	rs1581803-?	NR	2E-12	(Psoriasis)	1.22	[1.15-1.30]	Affymetrix, Illumina [~ 5200000]	N
1749	chr1	152593436	152593437	rs11205044	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	1q21.3	NR	rs11205044-C		2E-14		1.09		NR [8016731] (imputed)	N
1749	chr1	152600853	152600854	rs72702813	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	1q21.3	LCE3A	rs72702813-T	0.04056	1E-33		2.06	[1.83-2.31]	Illumina [128830]	N
1749	chr1	152603841	152603842	rs4845459	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1q21.3	LCE region	rs4845459-A	0.651	6E-11	(EA)	1.25	[1.17-1.34]	Illumina [up to 4778154] (imputed)	N
1749	chr1	152603841	152603842	rs4845459	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1q21.3	LCE region	rs4845459-A	0.651	5E-17		1.27	[1.2-1.35]	Illumina [up to 4778154] (imputed)	N
1749	chr1	152603841	152603842	rs4845459	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	1q21.3	LCE region	rs4845459-A	0.61	1E-7	(Chinese)	1.32	[1.19-1.46]	Illumina [up to 4778154] (imputed)	N
1749	chr1	152665679	152665680	rs12564811	33485957	Patrick MT	2021-01-21	J Allergy Clin Immunol	Associations between COVID-19 and skin conditions identified through epidemiology and genomic studies.	COVID-19 or psoriasis (trans-disease meta-analysis)	1,678 COVID-19 cases, 11,024 psoriasis cases, 690,971 controls	NA	1q21.3		rs12564811-?	NR	3E-8		1.25	NR	NR [NR]	N
1749	chr1	152685721	152685722	rs187652167	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	1q21.3	NR	rs187652167-?	NR	8E-6		1.6955	[0.76-2.63] unit increase	Illumina [at least 560000] (imputed)	N
1749	chr1	152692511	152692512	rs41268474	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1q21.3	LCE3E, C1orf68, LCE3D	rs41268474-?		6E-11		1.17	1.12-1.23	Illumina [87827]	N
1750	chr1	152733375	152733376	rs76337351	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1q21.3	LCE3D, LCE3E, KPRP	rs76337351-?		2E-8		1.2048193	[1.14-1.3]	Illumina [87827]	N
1750	chr1	152757094	152757096	rs77199844	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	LCE1E	rs77199844-?	NR	2E-17	(Atopic dermatitis)	1.23	[1.15-1.32]	Affymetrix, Illumina [~ 5200000]	N
1750	chr1	152771292	152771293	rs2065206	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs2065206-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1750	chr1	152771962	152771963	rs72702900	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs72702900-?	NR	9E-21				Affymetrix [~ 8270000] (imputed)	N
1750	chr1	152771962	152771963	rs72702900	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs72702900-?	NR	1E-30				Affymetrix [~ 8270000] (imputed)	N
1750	chr1	152771962	152771963	rs72702900	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	C1orf68, KPRP, LCE1A, LCE1B, LCE1C, LCE1D, LCE1E, LCE1F, LCE6A	rs72702900-A	0.038348	6E-16		1.1437758	[1.11-1.18]	Affymetrix [8274727] (imputed)	N
1750	chr1	152780521	152780522	rs17670505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs17670505-C	NR	2E-11		0.0361	[0.026-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1750	chr1	152795970	152795971	rs6659798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	1q21.3	NR	rs6659798-C	NR	2E-13		0.0423	[0.031-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1751	chr1	152849568	152849569	rs4845491	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	1q21.3		rs4845491-C	0.054	7E-10		0.119	[0.082-0.156] unit decrease	Affymetrix [812428]	N
1751	chr1	152875852	152875853	rs16834743	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.3	NR	rs16834743-?	NR	4E-20				Affymetrix [NR]	N
1751	chr1	152879765	152879766	rs189815567	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q21.3	Intergenic	rs189815567-T	NR	3E-6	(women)	0.0907214	[0.053-0.129] unit increase	Illumina [13520550] (imputed)	N
1751	chr1	152886873	152886874	rs34599045	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q21.3	NR	rs34599045-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1751	chr1	152887411	152887412	rs61815701	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q21.3	NR	rs61815701-G	0.9109	2E-8		0.0262	[0.017-0.035] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1751	chr1	152890469	152890470	rs11586313	26704534	Sapkota BR	2015-12-15	J Steroid Biochem Mol Biol	Genome-wide association study of 25(OH) Vitamin D concentrations in Punjabi Sikhs: Results of the Asian Indian diabetic heart study.	Vitamin D levels	1,387 Punjabi Sikh ancestry individuals	2,151 Punjabi Sikh ancestry individuals	1q21.3	IVL	rs11586313-G	0.55	1E-6		0.09	[0.05-0.13] unit increase	Illumina [5904251] (imputed)	N
1751	chr1	152893890	152893891	rs61815704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q21.3	NR	rs61815704-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1751	chr1	152893890	152893891	rs61815704	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q21.3	LCE1A, LCE1B, LCE1C, LCE1D, LCE6A, SMCP, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2D, SPRR2E, SPRR2F, SPRR3, SPRR4	rs61815704-?	NR	5E-9		1.14		NR [74888535] (imputed)	N
1751	chr1	152905029	152905030	rs73008553	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.3		rs73008553-T	0.0772	3E-9		0.109	[0.073-0.145] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1751	chr1	152921585	152921586	rs115813648	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs115813648-?	NR	3E-28				Affymetrix [~ 8270000] (imputed)	N
1751	chr1	152921585	152921586	rs115813648	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q21.3	IVL, LCE1A, LCE6A, LELP1, LOC101928009, LOR, PGLYRP3, PGLYRP4, PRR9, S100A7A, S100A7L2, S100A8, S100A9, S100A12, SMCP, SPRR1A, SPRR1B, SPRR2A, SPRR2B, SPRR2C, SPRR2D, SPRR2E, SPRR2F, SPRR2G, SPRR3, SPRR4	rs115813648-C	0.023134	2E-13		1.1686065	[1.13-1.21]	Affymetrix [8274727] (imputed)	N
1751	chr1	152924649	152924650	rs12734348	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12734348-T	0.1093	3E-47		0.3592	[0.31-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1751	chr1	152924649	152924650	rs12734348	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12734348-T	0.1194	6E-75		0.3066	[0.27-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1752	chr1	152989320	152989321	rs4363385	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q21.3	SNORA31, SPRR3, SPRR1B	rs4363385-?	NR	2E-15	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1752	chr1	153051660	153051661	rs184587444	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q21.3	SPRR2A	rs184587444-T	0.02	4E-12		0.125	[0.09-0.16] unit decrease	NR [NR] (imputed)	N
1752	chr1	153051660	153051661	rs184587444	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q21.3	SPRR2A	rs184587444-T	0.02	4E-28		0.191	[0.16-0.22] unit decrease	NR [7647814] (imputed)	N
1752	chr1	153068949	153068950	rs61811906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs61811906-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1752	chr1	153081203	153081204	rs11584009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.3	NR	rs11584009-G	0.923585	1E-10		0.174822	[0.12-0.23] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1753	chr1	153105073	153105074	rs535153283	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q21.3	NR	rs535153283-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1753	chr1	153111311	153111312	rs184958517	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs184958517-T	0.993064	6E-15		0.134888	[0.1-0.17] unit decrease	Affymetrix [16668957] (imputed)	N
1753	chr1	153133122	153133123	rs509061	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	1q21.3	SPRR2G	rs509061-C	NR	2E-7		2.08	[1.5-2.89]	Affymetrix, Illumina [8589102] (imputed)	N
1753	chr1	153136506	153136507	rs524887	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	1q21.3	SAMD13	rs524887-G	NR	4E-7		2.23	[1.58-3.14]	Affymetrix, Illumina [8589102] (imputed)	N
1753	chr1	153147996	153147997	rs558560635	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q21.3	NR	rs558560635-G	0.99774	6E-16		0.271577	[0.21-0.34] unit decrease	Affymetrix [16668957] (imputed)	N
1753	chr1	153186955	153186956	rs12755266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q21.3		rs12755266-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1753	chr1	153207086	153207087	rs16835093	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q21.3	NR	rs16835093-G	0.202946	1E-12		0.0273211	[0.02-0.035] unit increase	NR [19129689] (imputed)	N
1753	chr1	153212858	153212859	rs1329101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q21.3		rs1329101-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1754	chr1	153242497	153242498	rs12740234	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1q21.3	LOR, PGLYRP3	rs12740234-A	0.372	7E-6		0.1121	[0.063-0.161] unit increase	NR [NR] (imputed)	N
1754	chr1	153242497	153242498	rs12740234	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	1q21.3	LOR, PGLYRP3	rs12740234-A	NR	7E-6		0.1154	[0.065-0.166] unit increase	NR [NR] (imputed)	N
1754	chr1	153269188	153269189	rs72706894	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	1q21.3	NR	rs72706894-A		8E-7		0.247	[NR] unit decrease	Illumina [NR]	N
1754	chr1	153271047	153271048	rs1433679	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	1q21.3		rs1433679-A	0.2857	2E-6		1.517	[1.279-1.8]	Affymetrix [7975321] (imputed)	N
1754	chr1	153302723	153302724	rs538763482	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q21.3	NR	rs538763482-a	0.997	1E-13		0.56	[0.48-0.65]	Affymetrix, Illumina [16201029] (imputed)	N
1754	chr1	153314781	153314782	rs3014860	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	S100A7	rs3014860-A	0.94796875	2E-114	(S100A7, 7916_10_3)	1.2083178	[1.11-1.31] unit decrease	Illumina [> 1000000] (imputed)	N
1754	chr1	153331848	153331849	rs2916193	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	S100A12	rs2916193-G	0.74546875	8E-15	(S100A12, 5852_6_3)	0.22339518	[0.17-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1754	chr1	153334524	153334525	rs1560833	29212897	Salminen A	2017-12-01	Circ Cardiovasc Genet	Genetic Variants Contributing to Circulating Matrix Metalloproteinase 8 Levels and Their Association With Cardiovascular Diseases: A Genome-Wide Analysis.	Matrix metalloproteinase-8 levels	6,049 Finnish ancestry individuals	NA	1q21.3	S100A9, S100A12, S100A8	rs1560833-A	0.28	5E-13		0.16	[0.12-0.2] unit decrease	Illumina [at least 2300000] (imputed)	N
1754	chr1	153336017	153336018	rs724781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q21.3	S100A9	rs724781-G	0.280448	5E-14		0.018576419	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chr1	153337942	153337943	rs3014874	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A12	5,366 Icelandic ancestry individuals	NA	1q21.3		rs3014874-A	0.2546	9E-27		0.231538	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1754	chr1	153339781	153339782	rs60752752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q21.3		rs60752752-G	0.118251	3E-29		0.038979277	[0.032-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1754	chr1	153339781	153339782	rs60752752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q21.3	intergenic	rs60752752-G	0.1176	3E-9		0.03333822	[0.022-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1754	chr1	153339781	153339782	rs60752752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q21.3	intergenic	rs60752752-G	0.1176	4E-9		0.03335504	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1754	chr1	153340648	153340649	rs34216521	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q21.3	NR	rs34216521-?	NR	1E-38				Affymetrix [NR]	N
1754	chr1	153343717	153343717	rs766764264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q21.3	NR	rs766764264-D	0.115538	6E-18		0.027365	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1754	chr1	153353030	153353031	rs61803338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q21.3	AL591704.5	rs61803338-G	0.109041	6E-10		0.02239356	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1755	chr1	153363104	153363105	rs3795391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q21.3	S100A8	rs3795391-C	0.117014	3E-18		0.029906893	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1755	chr1	153368019	153368020	rs3014807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs3014807-T	0.121022	9E-16				Affymetrix, Illumina [23467995] (imputed)	N
1755	chr1	153388189	153388190	rs56048640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q21.3		rs56048640-T	NR	2E-14		0.0279	[0.021-0.035] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1755	chr1	153393553	153393554	rs3014818	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	1q21.3	S100A7A	rs3014818-C	0.04476	8E-7		2.215	[1.89-2.54]	Illumina [281811]	N
1755	chr1	153465562	153465563	rs28696717	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	1q21.3	Intergenic	rs28696717-?		1E-6	(male)	0.436	[0.26-0.61] unit decrease	NR [~ 5500000] (imputed)	N
1755	chr1	153466703	153466704	rs6672390	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	1q21.3	S100A6	rs6672390-?	NR	7E-10		0.004543	[0.0021-0.007] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1755	chr1	153479997	153479998	rs4845552	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	1q21.3	S100A5	rs4845552-?	NR	6E-6				Illumina [516645]	N
1756	chr1	153500207	153500208	rs2265081	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q21.3	NR	rs2265081-C	NR	5E-8	(GEE model)	1.054	[0.68-1.43] unit increase	NR [NR] (imputed)	N
1756	chr1	153505438	153505439	rs34316494	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	1q21.3	NR	rs34316494-TC		9E-6		0.1331	[0.074-0.192] SD units increase	NR [10700000] (imputed)	N
1756	chr1	153506479	153506480	rs146473781	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs146473781-G	0.0122	3E-8	(CLIC4)	0.03404	NR unit decrease	Illumina [1671387] (imputed)	N
1756	chr1	153506479	153506480	rs146473781	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs146473781-G	0.0122	2E-8	(PSMD14)	0.08551	NR unit decrease	Illumina [1671387] (imputed)	N
1756	chr1	153506479	153506480	rs146473781	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs146473781-G	0.0122	1E-8	(MTHFS)	0.05429	NR unit decrease	Illumina [1671387] (imputed)	N
1756	chr1	153515119	153515120	rs1810765	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs1810765-T	0.5858	5E-8		0.0882	[0.056-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1756	chr1	153517092	153517093	rs138957616	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q21.3	S100A4	rs138957616-G	0.1376	4E-8		0.2473	[0.16-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
1756	chr1	153518952	153518953	rs60969679	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A6	5,357 Icelandic ancestry individuals	NA	1q21.3		rs60969679-A	0.03377	1E-12		0.363044	[0.26-0.46] unit increase	Illumina [7506463] (imputed)	N
1756	chr1	153518952	153518953	rs60969679	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A4	5,357 Icelandic ancestry individuals	NA	1q21.3		rs60969679-A	0.03377	6E-16		0.416332	[0.32-0.52] unit increase	Illumina [7506463] (imputed)	N
1756	chr1	153524705	153524706	rs58056804	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	S100A4	rs58056804-A	0.05	5E-19	(Protein S100-A4, S100A4.14116.129.3)	0.5	[0.38-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1756	chr1	153544448	153544449	rs143640806	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	1q21.3		rs143640806-A	NR	9E-6		0.541544	[0.27-0.81] unit increase	Affymetrix [825927] (imputed)	N
1756	chr1	153605955	153605958	rs35848200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q21.3	S100A13, RP1-178F15.4, RP1-178F15.5	rs35848200-C	0.542865	4E-15		0.017796502	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1757	chr1	153624790	153624791	rs10797090	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	1q21.3	NR	rs10797090-A	NR	5E-6		0.083	[0.048-0.118] unit decrease	Illumina [6319684] (imputed)	N
1757	chr1	153628644	153628645	rs75348188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.3	NR	rs75348188-C	0.887611	4E-10		0.141961	[0.098-0.186] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1757	chr1	153640826	153640827	rs7536700	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1q21.3	NR	rs7536700-A	0.07	9E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.86	[1.42-2.46]	Illumina [414804] (imputed)	N
1757	chr1	153640826	153640827	rs7536700	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		1q21.3	NR	rs7536700-A	0.07	4E-6	(Any IgH translocation vs. controls)	1.53	[1.28-1.84]	Illumina [414804] (imputed)	N
1757	chr1	153658296	153658297	rs61757359	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	1q21.3	NR	rs61757359-A	0.0033	9E-6	(EA)	1.167	mmHg decrease	Illumina [242296]	N
1757	chr1	153658479	153658480	rs11264236	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	1q21.3	NR	rs11264236-A	NR	2E-6		0.099	[0.058-0.14] unit increase	Illumina [6319684] (imputed)	N
1757	chr1	153660531	153660532	rs748314786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	1q21.3		rs748314786-?	NR	3E-9		0.2942	[0.19-0.4] unit increase	NR [9800000] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q21.3		rs35479618-A	NR	5E-14		0.0649	[0.048-0.082] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q21.3		rs35479618-A	NR	8E-14		0.0653	[0.048-0.082] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q21.3		rs35479618-A	NR	4E-12		0.0631	[0.045-0.081] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q21.3		rs35479618-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q21.3		rs35479618-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1757	chr1	153662422	153662423	rs35479618	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	1q21.3	NPR1	rs35479618-A	0.014	6E-8		1.11	[0.72-1.5] unit increase	Illumina [247039]	N
1757	chr1	153662422	153662423	rs35479618	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1q21.3	NPR1	rs35479618-A	0.0135160496703705	4E-7		0.9850215	[0.6-1.37] unit increase	Illumina [247039]	N
1757	chr1	153683739	153683740	rs4845353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs4845353-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1758	chr1	153750681	153750682	rs146128753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q21.3		rs146128753-A	0.014319	1E-13		0.0622576	[0.046-0.079] unit increase	Illumina [13479295] (imputed)	N
1758	chr1	153750681	153750682	rs146128753	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.3	SLC27A3	rs146128753-?	NR	2E-12		0.084464096	[0.061-0.108] unit increase	Illumina [27896057] (imputed)	N
1758	chr1	153753724	153753725	rs10908474	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Number of children ever born	225,230 European ancestry women, 103,909 European ancestry men		1q21.3	SLC27A3, GATAD2B	rs10908474-A	0.384	2E-8		0.02	NR unit increase	NR [2400000] (imputed)	N
1758	chr1	153753724	153753725	rs10908474	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Number of children ever born	225,230 European ancestry women		1q21.3	SLC27A3, GATAD2B	rs10908474-A	0.384	8E-6		0.02	NR unit increase	NR [2400000] (imputed)	N
1758	chr1	153756082	153756083	rs6665637	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q21.3	SLC27A3, GATAD2B	rs6665637-G	0.7196	2E-9		1.0197933		Affymetrix [11880941] (imputed)	N
1758	chr1	153757564	153757565	rs7366960	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	1q21.3	SLC27A3	rs7366960-A	NR	4E-6		1.19	[NR] unit increase	Affymetrix [NR] (imputed)	N
1758	chr1	153761749	153761750	rs9427220	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	1q21.3	INTS3	rs9427220-A	0.445	1E-9		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1758	chr1	153765398	153765399	rs6690619	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q21.3	NR	rs6690619-C	0.488	8E-12				NR [9056863] (imputed)	N
1758	chr1	153765398	153765399	rs6690619	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	1q21.3	SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L	rs6690619-?	NR	3E-8		0.0135468	[0.0088-0.0183] unit increase	Affymetrix [25921788] (imputed)	N
1758	chr1	153765398	153765399	rs6690619	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q21.3	SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs6690619-?	NR	6E-14		0.0182667	[0.014-0.023] unit increase	Affymetrix [25921788] (imputed)	N
1758	chr1	153769399	153769400	rs9426935	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q21.3	LOC343052	rs9426935-C	0.49	5E-6		96.63	[NR] unit decrease	Illumina [2380200] (imputed)	N
1758	chr1	153774275	153774276	rs4434872	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	1q21.3	LOC343052	rs4434872-T	0.263	8E-6		0.08	[NR] unit increase	Illumina [948658]	N
1758	chr1	153787278	153787279	rs113422987	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q21.3	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs113422987-?		1E-10				NR [7428630] (imputed)	N
1758	chr1	153794950	153794951	rs116605491	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q21.3	NR	rs116605491-A	0.03136	1E-8	(PSMA1)	0.1083	NR unit decrease	Illumina [1671387] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1q21.3	NR	rs112780312-G	0.277336	5E-11		0.04610209	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q21.3		rs112780312-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q21.3	Intergenic	rs112780312-A	0.2761	5E-16	(MTAG)	0.0209	[0.016-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1q21.3	Intergenic	rs112780312-A	0.2761	4E-11		0.0212	[0.015-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q21.3	NR	rs112780312-A	NR	4E-9		5.899	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1758	chr1	153797014	153797015	rs112780312	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q21.3	GATAD2B	rs112780312-A	NR	1E-8		5.736	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1758	chr1	153798127	153798128	rs4391701	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q21.3	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs4391701-?		2E-15				NR [7428630] (imputed)	N
1758	chr1	153798127	153798128	rs4391701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q21.3	Intergenic	rs4391701-T	0.312	8E-18	(MTAG)	0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1758	chr1	153816048	153816049	rs78053957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q21.3		rs78053957-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1758	chr1	153821449	153821449	rs113142203	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q21.3	GATAD2B	rs113142203-A	0.677557	3E-10		0.0140781	[0.0097-0.0185] unit increase	NR [16516521] (imputed)	N
1758	chr1	153822672	153822673	rs4612664	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q21.3		rs4612664-C	0.29	3E-25		10.37	z score increase	Affymetrix [9061022] (imputed)	N
1758	chr1	153822672	153822673	rs4612664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q21.3	Intergenic	rs4612664-T	0.6851	1E-16	(MTAG)	0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1758	chr1	153822672	153822673	rs4612664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q21.3	Intergenic	rs4612664-T	0.6852	2E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1758	chr1	153823727	153823728	rs112749520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs112749520-A	NR	3E-18		0.0853	[0.066-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1758	chr1	153823917	153823918	rs72694234	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q21.3	NR	rs72694234-G	0.2966	1E-17				NR [9056863] (imputed)	N
1758	chr1	153824851	153824852	rs16835630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs16835630-C	NR	9E-17		0.0759	[0.058-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1758	chr1	153827551	153827552	rs7554469	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	1q21.3	NR	rs7554469-A	0.4889	3E-9		0.0218	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1758	chr1	153828079	153828080	rs4595397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q21.3	Intergenic	rs4595397-T	0.6867	1E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1758	chr1	153831228	153831229	rs67881926	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1q21.3	NR	rs67881926-C	0.9459	9E-6		0.030060733	[0.017-0.043] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1758	chr1	153842031	153842032	rs111237020	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs111237020-C	0.951388	2E-16		0.0376378	[0.029-0.047] unit increase	NR [NR]	N
1758	chr1	153847969	153847970	rs147355776	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q21.3	GATAD2B	rs147355776-?	NR	5E-14		0.039336894	[0.029-0.05] unit increase	Illumina [27896057] (imputed)	N
1758	chr1	153848995	153848996	rs7414227	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q21.3	GATAD2B	rs7414227-G	0.49	3E-6		99.5	[NR] unit decrease	Illumina [2380200] (imputed)	N
1758	chr1	153858719	153858720	rs7537691	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q21.3	NR	rs7537691-T	0.300041	2E-11		0.0223196	[0.016-0.029] unit decrease	NR [19129689] (imputed)	N
1758	chr1	153875688	153875689	rs11264567	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	1q21.3	GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4	rs11264567-G	0.30279	3E-7	(males)	0.72	[0.45-0.99] unit increase	Illumina [9955952] (imputed)	N
1759	chr1	153886872	153886873	rs12033835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q21.3	Intergenic	rs12033835-T	0.6944	2E-12	(MTAG)	0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1759	chr1	153899900	153899901	rs34579442	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	1q21.3	DENND4B	rs34579442-C	NR	8E-7		1.08	[NR]	Illumina [20370935] (imputed)	N
1759	chr1	153899900	153899901	rs34579442	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1q21.3	DENND4B	rs34579442-C	0.34	5E-14		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
1759	chr1	153913769	153913770	rs2252508	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q21.3	DENND4B	rs2252508-G	0.47	5E-6		97.78	[NR] unit decrease	Illumina [2380200] (imputed)	N
1759	chr1	153919858	153919858	rs3841064	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q21.3	SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L	rs3841064-?	NR	4E-9	(male)	0.0210424	[0.014-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
1759	chr1	153921482	153921483	rs199747428	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1q21.3	CRTC2	rs199747428-A	0.3023	4E-14		0.0804	[0.06-0.101] unit decrease	NR [9744772] (imputed)	N
1759	chr1	153923275	153923276	rs10127983	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q21.3	NR	rs10127983-T	NR	1E-19		1.066	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1759	chr1	153926077	153926078	rs11264680	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q21.3	NR	rs11264680-?	NR	3E-7		5.149	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1759	chr1	153927051	153927052	rs10908557	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	48,408 European ancestry men		1q21.3	CRTC2, CREB3L4, GATAD2B, SLC39A1, DENND4B	rs10908557-C	0.695	3E-7		0.185	NR unit increase	Illumina [2400000] (imputed)	N
1759	chr1	153927051	153927052	rs10908557	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		1q21.3	CRTC2, CREB3L4, GATAD2B, SLC39A1, DENND4B	rs10908557-C	0.695	6E-10		0.091	NR unit increase	Illumina [2400000] (imputed)	N
1759	chr1	153927051	153927052	rs10908557	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		1q21.3	CRTC2, CREB3L4, GATAD2B, SLC39A1, DENND4B	rs10908557-C	0.695	5E-6		0.076	NR unit increase	Illumina [2400000] (imputed)	N
1759	chr1	153939129	153939130	rs11264736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREB3L4	5,364 Icelandic ancestry individuals	NA	1q21.3		rs11264736-T	0.4494	1E-51		0.275841	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
1759	chr1	153939129	153939130	rs11264736	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q21.3	SLC39A1	rs11264736-T	0.47	4E-6		98.69	[NR] unit decrease	Illumina [2380200] (imputed)	N
1759	chr1	153942084	153942085	rs78314980	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q21.3	CREB3L4	rs78314980-T	NR	9E-6		0.042165	[0.024-0.061] unit decrease	Illumina [13519193] (imputed)	N
1759	chr1	153942596	153942597	rs4845586	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	CREB3L4	rs4845586-G	0.47	7E-25	(Cyclic AMP-responsive element-binding protein 3-like protein 4, CREB3L4.11308.8.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1759	chr1	153943799	153943800	rs6666703	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1q21.3		rs6666703-?	NR	4E-9				NR [9705931] (imputed)	N
1759	chr1	153943799	153943800	rs6666703	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	1q21.3	PRDM16	rs6666703-?		4E-8				NR [7428630] (imputed)	N
1759	chr1	153958200	153958200	rs3838485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	1q21.3		rs3838485-CGG	NR	4E-9		0.075	[0.05-0.1] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1759	chr1	153966659	153966660	rs4845360	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	CREB3L4	rs4845360-G	0.4528125	2E-30	(CREB3L4, 11308_8_3)	0.27599877	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1759	chr1	153986118	153986119	rs6672856	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q21.3	NR	rs6672856-?	NR	1E-8	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
1760	chr1	154011623	154011624	rs115178836	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs115178836-C	0.987725	2E-9		0.0551535	[0.037-0.073] unit decrease	NR [NR]	N
1760	chr1	154016884	154016884	rs200584227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q21.3		rs200584227-CA	NR	2E-14		0.0203	[0.015-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1760	chr1	154017500	154017501	rs2841102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q21.3	NUP210L	rs2841102-C	0.438673	2E-20		0.02094134	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr1	154019932	154019933	rs7547009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1q21.3		rs7547009-C	0.244179	3E-10		0.0260523	[0.018-0.034] unit increase	Illumina [13476165] (imputed)	N
1760	chr1	154020377	154020378	rs6671009	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q21.3	Intergenic	rs6671009-T	0.1375	2E-22	(MTAG)	0.0254	[0.02-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1760	chr1	154020377	154020378	rs6671009	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q21.3	Intergenic	rs6671009-T	0.1381	2E-18	(MTAG)	0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1760	chr1	154036160	154036161	rs75164063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs75164063-A	NR	7E-11		0.0512	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1760	chr1	154072286	154072287	rs7537213	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	1q21.3	SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1	rs7537213-?	NR	5E-11		0.0160824	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1760	chr1	154072286	154072287	rs7537213	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	1q21.3	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189	rs7537213-?	NR	3E-9		0.014532	[0.0097-0.0193] unit increase	Affymetrix [25921788] (imputed)	N
1760	chr1	154086511	154086512	rs111804060	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	1q21.3	NUP210L	rs111804060-?	NR	2E-10		0.02645	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1760	chr1	154088257	154088258	rs12130660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q21.3	NUP210L	rs12130660-C	0.048864	4E-13		0.0379113	[0.028-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1760	chr1	154088257	154088258	rs12130660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q21.3		rs12130660-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1760	chr1	154090500	154090501	rs17366139	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs17366139-C	0.890677	1E-9		0.0194117	[0.013-0.026] unit decrease	NR [NR]	N
1760	chr1	154092055	154092056	rs2494663	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q21.3		rs2494663-C	0.449	4E-10				Affymetrix [10369434] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q21.3	NUP210L	rs2494663-A	0.550007	1E-17		0.01915641	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs2494663-A	0.462744	1E-29				Affymetrix, Illumina [24588908] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q21.3	NR	rs2494663-A	0.549554	9E-32		0.021553	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs2494663-C	0.449155	5E-20				Affymetrix, Illumina [17210439] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q21.3	NR	rs2494663-C	0.44993	5E-22		0.01848	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1760	chr1	154092055	154092056	rs2494663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q21.3	NUP210L	rs2494663-A	0.5502	5E-9		0.02120509	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1760	chr1	154093824	154093825	rs6671166	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q21.3		rs6671166-G	NR	2E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1760	chr1	154093824	154093825	rs6671166	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q21.3		rs6671166-G	0.659	2E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1760	chr1	154093824	154093825	rs6671166	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q21.3	NR	rs6671166-G	NR	2E-9		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1760	chr1	154095015	154095016	rs2500220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q21.3	NUP210L	rs2500220-T	0.491115	1E-31		0.026077535	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr1	154095371	154095372	rs6692026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q21.3	NUP210L	rs6692026-C	0.326106	4E-11		0.01590362	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1760	chr1	154100692	154100693	rs36106412	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 receptor subunit alpha levels	21,758 European ancestry individuals	9,173 individuals	1q21.3		rs36106412-A	0.14	1E-12		0.0928	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1760	chr1	154106636	154106637	rs2494668	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q21.3	Intergenic	rs2494668-T	0.1653	2E-25		0.0273	[0.022-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1760	chr1	154106636	154106637	rs2494668	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q21.3	Intergenic	rs2494668-T	0.1658	6E-10		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1760	chr1	154108500	154108501	rs16835819	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs16835819-T	0.981642	2E-22		0.0739244	[0.059-0.089] unit increase	NR [NR]	N
1760	chr1	154109152	154109153	rs2494667	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	1q21.3	NUP210L	rs2494667-A	0.493	1E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1760	chr1	154113273	154113274	rs3002660	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1q21.3	NR	rs3002660-?	NR	4E-6		3.71	[2.91-4.72]	Illumina [539000] (imputed)	N
1760	chr1	154125066	154125067	rs3001363	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q21.3		rs3001363-T	0.47	2E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
1760	chr1	154127099	154127100	rs4400599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q21.3	NUP210L	rs4400599-C	0.5103	5E-14		0.02704886	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1760	chr1	154127548	154127549	rs114697636	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs114697636-C	0.959692	3E-8		0.0275013	[0.018-0.037] unit decrease	NR [NR]	N
1760	chr1	154131869	154131870	rs3935419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q21.3		rs3935419-A	0.395093	6E-18		0.0316593	[0.024-0.039] unit increase	Illumina [13476266] (imputed)	N
1760	chr1	154135444	154135445	rs4446955	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q21.3		rs4446955-C	0.19	3E-15		7.9	z score increase	Affymetrix [9061022] (imputed)	N
1760	chr1	154135444	154135445	rs4446955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q21.3		rs4446955-C	NR	9E-24		0.0235	[0.019-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1760	chr1	154135444	154135445	rs4446955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q21.3	TPM3	rs4446955-C	0.180656	1E-9		0.017526634	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154141907	154141908	rs4845364	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1q21.3	NR	rs4845364-?		1E-12		0.0153008	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1761	chr1	154149239	154149240	rs10797047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1q21.3		rs10797047-A	0.567271	4E-9		0.018459	[0.012-0.025] unit increase	Illumina [13479135] (imputed)	N
1761	chr1	154149239	154149240	rs10797047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1q21.3		rs10797047-A	0.567668	3E-17		0.0307918	[0.024-0.038] unit decrease	Illumina [13476299] (imputed)	N
1761	chr1	154149766	154149767	rs11265238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1q21.3	NR	rs11265238-T	0.605188	2E-14		0.031853	[0.024-0.04] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1761	chr1	154150447	154150448	rs4620534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q21.3	NR	rs4620534-A	NR	1E-9		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1761	chr1	154150447	154150448	rs4620534	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1q21.3	TPM3	rs4620534-?	NR	8E-16		0.03485	[0.026-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1761	chr1	154154193	154154194	rs35761479	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1q21.3	TPM3	rs35761479-A	0.122	4E-13		0.0253	[0.018-0.032] unit decrease	Illumina [~ 250000] (imputed)	N
1761	chr1	154154193	154154194	rs35761479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1q21.3	C1orf189	rs35761479-A	0.1212	3E-11		0.022095622	[0.016-0.029] unit decrease	Affymetrix [11514654] (imputed)	N
1761	chr1	154154586	154154587	rs61806853	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs61806853-C	NR	4E-16		0.0452	[0.034-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1761	chr1	154154586	154154587	rs61806853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q21.3	TPM3	rs61806853-C	0.049509	9E-10		0.0372302	[0.028-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr1	154154586	154154587	rs61806853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q21.3	TPM3	rs61806853-C	0.049525	3E-9		0.030301686	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154154586	154154587	rs61806853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q21.3	TPM3	rs61806853-C	0.0495330000000001	9E-11		0.033067692	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154157848	154157852	rs34660448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q21.3	TPM3	rs34660448-C	0.6153	2E-9		0.02303921	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1761	chr1	154161665	154161666	rs9700528	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1q21.3	TPM3	rs9700528-?	NR	7E-15		0.03756	[0.028-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1761	chr1	154163525	154163526	rs11802893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1q21.3		rs11802893-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1761	chr1	154171549	154171550	rs12726220	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1q21.3	NR	rs12726220-A	0.949	2E-6		0.0292	[0.017-0.041] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1761	chr1	154201654	154201655	rs12145394	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs12145394-T	0.9336	5E-54		0.3433	[0.3-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1761	chr1	154206357	154206358	rs12027999	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1q21.3	UBAP2L	rs12027999-C		1E-8		0.97	[NR]	Affymetrix [up to 79000000] (imputed)	N
1761	chr1	154206357	154206358	rs12027999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q21.3	NR	rs12027999-C	0.12	7E-13		0.011901	[0.0087-0.0152] unit decrease	NR [9732723] (imputed)	N
1761	chr1	154206357	154206358	rs12027999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q21.3	NR	rs12027999-C	0.12	5E-10		0.024358766	[0.017-0.032] unit decrease	NR [~ 10000000] (imputed)	N
1761	chr1	154210670	154210671	rs3790613	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q21.3		rs3790613-C	0.876	3E-9		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1761	chr1	154219176	154219177	rs6673752	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1q21.3	UBAP2L	rs6673752-C	0.055	1E-11		0.027	[0.019-0.035] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1761	chr1	154227018	154227019	rs12733060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	1q21.3	NR	rs12733060-T	0.58164	1E-13		0.031054	[0.023-0.039] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1761	chr1	154239334	154239334	rs35482991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q21.3		rs35482991-TC	NR	5E-21		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1761	chr1	154245916	154245917	rs13796	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q21.3	UBAP2L	rs13796-T	0.8641	2E-10		0.1626	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1761	chr1	154251258	154251259	rs143745938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q21.3	HAX1	rs143745938-T	0.247852	1E-11		0.017586956	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154251258	154251259	rs143745938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q21.3	HAX1	rs143745938-T	0.247804	1E-18		0.022671904	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1761	chr1	154251258	154251259	rs12749691	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q21.3	HAX1	rs12749691-A	0.699288	1E-20		0.0204842	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1761	chr1	154252859	154252860	rs7521837	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q21.3	NR	rs7521837-T	NR	9E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1761	chr1	154255509	154255510	rs561548180	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q21.3	SNORD59	rs561548180-A	0.9974	3E-6		0.4093	[0.24-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1761	chr1	154255509	154255510	rs561548180	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q21.3	SNORD59	rs561548180-A	0.9974	3E-6		0.4093	[0.24-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1761	chr1	154257893	154257894	rs1760803	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	1q21.3	HAX1, CHRNB2	rs1760803-A		4E-6	(EA)	0.03	[0.01-0.05] unit decrease	Illumina [at least 3251541] (imputed)	N
1761	chr1	154258548	154258549	rs12142550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q21.3		rs12142550-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1761	chr1	154259649	154259650	rs1760801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q21.3		rs1760801-A	NR	8E-22		0.0204	[0.016-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1761	chr1	154259649	154259650	rs1760801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q21.3	SNORD59	rs1760801-A	0.296554	3E-9		0.0186535	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154259649	154259650	rs1760801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q21.3	SNORD59	rs1760801-A	0.296544	1E-11		0.016473249	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1761	chr1	154260360	154260361	rs7522777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q21.3	NR	rs7522777-C	0.945634	2E-13		0.234326	[0.17-0.3] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1761	chr1	154260360	154260361	rs7522777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs7522777-G	0.312312	8E-29				Affymetrix, Illumina [20825802] (imputed)	N
1761	chr1	154265960	154265961	rs115462819	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs115462819-C	0.971134	4E-9		0.0374243	[0.025-0.05] unit decrease	NR [NR]	N
1761	chr1	154265960	154265961	rs115462819	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q21.3	UBAP2L, HAX1, AQP10, ATP8B2	rs115462819-C	0.9527	2E-6		1.1660312		NR [9372253] (imputed)	N
1761	chr1	154270876	154270877	rs3103309	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1q21.3	NR	rs3103309-?		2E-7	(IL6R)	0.2424	[NR] unit increase	Illumina [NR]	N
1762	chr1	154282221	154282222	rs12121180	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	RP11-137P24.5	rs12121180-T	0.1646586	3E-15	(EA, Interleukin-6 receptor subunit alpha)	0.4657	[0.35-0.58] unit increase	Affymetrix [509946]	N
1762	chr1	154285486	154285487	rs7528167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1q21.3		rs7528167-G	NR	4E-9		0.047	[0.031-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1762	chr1	154286565	154286566	rs117744355	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q21.3	HAX1, AQP10	rs117744355-?	NR	5E-9		0.1609	[0.11-0.21] unit decrease novel	Illumina [6108953] (imputed)	N
1762	chr1	154286565	154286566	rs117744355	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q21.3	HAX1, AQP10	rs117744355-?	NR	1E-12		0.2098	[0.15-0.27] unit decrease novel	Illumina [6108953] (imputed)	N
1762	chr1	154291254	154291255	rs12563213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q21.3	AQP10	rs12563213-C	0.261523	2E-14		0.019652028	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr1	154291254	154291255	rs12563213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q21.3		rs12563213-?	NR	6E-23				NR [~ 8900000] (imputed)	N
1762	chr1	154291254	154291255	rs12563213	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q21.3	AQP10	rs12563213-C	0.2618	2E-10		0.02544121	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr1	154291254	154291255	rs12563213	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q21.3	AQP10	rs12563213-C	0.2619	9E-10		0.02466982	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1762	chr1	154291371	154291372	rs10908819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q21.3	AQP10	rs10908819-T	0.261577	6E-16		0.0261578	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr1	154291371	154291372	rs10908819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q21.3	NR	rs10908819-T	0.261036	6E-34		0.025123	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1762	chr1	154291957	154291958	rs35950207	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	1q21.3	AQP10	rs35950207-T	0.31	5E-6		0.18	[0.1-0.26] unit decrease	Illumina [5918868] (imputed)	N
1762	chr1	154293674	154293675	rs6668968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q21.3		rs6668968-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1762	chr1	154294259	154294260	rs1194606	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q21.3	NR	rs1194606-C	0.2334	3E-8		0.0301	[0.019-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1762	chr1	154295591	154295592	rs6685323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q21.3	AQP10	rs6685323-T	0.30998	2E-13		0.017550677	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1762	chr1	154303227	154303228	rs115165870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs115165870-A	NR	1E-12		0.0431	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1762	chr1	154309595	154309596	rs68062313	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	1q21.3	ATP8B2	rs68062313-TA	0.09	3E-8		1.1	1.06-1.13	Illumina [12557761] (imputed)	N
1762	chr1	154311910	154311911	rs2481065	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	1q21.3	ATP8B2	rs2481065-G	NR	4E-13		1.27	[1.19-1.36]	Illumina [7461261] (imputed)	N
1762	chr1	154316995	154316996	rs77993403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs77993403-A	NR	2E-13		0.0415	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1762	chr1	154321622	154321623	rs41310887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs41310887-A	NR	6E-13		0.0404	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1762	chr1	154324383	154324384	rs1194592	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q21.3	NR	rs1194592-G	0.4687	5E-10		0.0242	[0.017-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1762	chr1	154326472	154326473	rs1889312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs1889312-A	0.434988	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1762	chr1	154336715	154336716	rs67156297	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	1q21.3	ATP8B2	rs67156297-A	NR	5E-6		1.05	[ 1.03 - 1.08 ]	Illumina [7521072] (imputed)	N
1762	chr1	154336715	154336716	rs67156297	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	1q21.3	ATP8B2	rs67156297-A	0.087	2E-8	(Japanese)	1.14	[1.09-1.19]	Illumina [7521072] (imputed)	N
1762	chr1	154337176	154337177	rs6698130	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q21.3		rs6698130-A	NR	1E-6		4.8977184	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1762	chr1	154343485	154343486	rs6661909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q21.3		rs6661909-T	0.301478	1E-24		0.024654083	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1762	chr1	154343485	154343486	rs6661909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs6661909-T	0.306014	4E-34				Affymetrix, Illumina [24246363] (imputed)	N
1762	chr1	154353357	154353358	rs11579718	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q21.3	ATP8B2	rs11579718-?	NR	9E-6	(salicylurate)	0.22299147	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1762	chr1	154359914	154359915	rs12077265	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs12077265-T	0.845135	2E-78		0.0524344	[0.047-0.058] unit increase	NR [NR]	N
1762	chr1	154361405	154361406	rs12735458	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs12735458-A	0.986465	1E-10		0.0569417	[0.04-0.074] unit increase	NR [NR]	N
1762	chr1	154364139	154364140	rs11265608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs11265608-A	NR	4E-11		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1762	chr1	154364139	154364140	rs11265608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs11265608-A	NR	6E-29		0.0438	[0.036-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1762	chr1	154373230	154373231	rs7553271	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1q21.3	ATP8B2, IL6R	rs7553271-?	NR	2E-9		0.03013	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1762	chr1	154377575	154377576	rs117525971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q21.3		rs117525971-T	NR	6E-39		0.1578	[0.13-0.18] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1762	chr1	154377575	154377576	rs117525971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	1q21.3		rs117525971-T	0.029402	6E-39		0.157825	[0.13-0.18] unit decrease	Illumina [13477433] (imputed)	N
1762	chr1	154377897	154377898	rs4845617	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q21.3	NR	rs4845617-?	NR	2E-11		0.03292	[0.023-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1762	chr1	154379368	154379369	rs72698115	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	1q21.3	ATP8B2, IL6R	rs72698115-C	0.1	1E-8	(dominant model)	1.36	[1.22-1.52]	Illumina [123003]	N
1762	chr1	154381102	154381103	rs12083537	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q21.3	IL6R	rs12083537-A	0.79	1E-33		0.064	[0.054-0.074] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1762	chr1	154382048	154382049	rs1386821	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	1q21.3	IL6R	rs1386821-G	0.194796	6E-7		0.029338	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1762	chr1	154382048	154382049	rs1386821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q21.3	NR	rs1386821-G	NR	1E-13		0.0219	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1762	chr1	154382048	154382049	rs1386821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs1386821-G	NR	4E-97		0.0619	[0.056-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1762	chr1	154395211	154395212	rs4133213	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	Interleukin-6 levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1q21.3	IL6R	rs4133213-A	0.394	6E-17		0.0997	[0.076-0.123] unit increase	Affymetrix [up to 12642786] (imputed)	N
1762	chr1	154395211	154395212	rs4133213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q21.3	NR	rs4133213-A	0.445707	2E-27		0.021447	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1762	chr1	154395945	154395946	rs6689306	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q21.3	KCNN3	rs6689306-A	0.413	1E-18		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
1762	chr1	154395945	154395946	rs6689306	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	1q21.3	IL6R	rs6689306-A	0.419	2E-6		0.0111	[0.0066-0.0156] unit increase	Affymetrix [11535925] (imputed)	N
1762	chr1	154395945	154395946	rs6689306	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1q21.3	IL6R	rs6689306-A	0.435	2E-9		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
1762	chr1	154395945	154395946	rs6689306	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1q21.3	IL6R	rs6689306-A	0.447545	3E-9		1.06	[1.04- 1.08]	Affymetrix, Illumina [8600000] (imputed)	N
1762	chr1	154397415	154397416	rs12118721	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1q21.3	IL6R	rs12118721-T	0.48	1E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [8600000] (imputed)	N
1762	chr1	154398552	154398554	rs146402667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	NR	rs146402667-G	0.502	9E-534	(Interleukin-6 receptor subunit alpha, IL6R.8092.29.3)	0.95	[0.91-0.99] unit increase	Affymetrix [10572788] (imputed)	N
1762	chr1	154398552	154398554	rs146402667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	NR	rs146402667-G	0.502	1E-532	(Interleukin-6 receptor subunit alpha, IL6R.4139.71.2)	0.95	[0.91-0.99] unit increase	Affymetrix [10572788] (imputed)	N
1762	chr1	154399396	154399396	rs34172480	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	NR	rs34172480-AT	0.352	4E-469	(Interleukin-6 receptor subunit alpha, IL6R.8092.29.3)	1.0	[0.96-1.04] unit increase	Affymetrix [10572788] (imputed)	N
1763	chr1	154405023	154405024	rs56383622	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Interleukin-6 levels	8,296 European ancestry individuals	NA	1q21.3	IL6R	rs56383622-?	NR	1E-22		0.231	[0.18-0.28] unit decrease	Illumina [NR] (imputed)	N
1763	chr1	154407712	154407713	rs7521458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1q21.3		rs7521458-C	NR	1E-8		0.0407	[0.027-0.055] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1763	chr1	154410356	154410358	rs1202085373	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q21.3	IL6R	rs1202085373-A	0.41675300000000004	2E-12		1.0444554	[1.03193148291903-1.05713134897115]	NR [9572556] (imputed)	N
1763	chr1	154411418	154411419	rs4845622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q21.3		rs4845622-C	NR	1E-16		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1763	chr1	154414036	154414037	rs4393147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q21.3	NR	rs4393147-T	0.41537	6E-21		0.01781	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1763	chr1	154415674	154415675	rs79219014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs79219014-T	NR	7E-30		0.0847	[0.07-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr1	154415776	154415777	rs4845623	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q21.3	IL6R	rs4845623-G	NR	4E-56	(women)	0.075	[NR] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1763	chr1	154415776	154415777	rs4845623	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q21.3	IL6R	rs4845623-G	NR	3E-73	(men)	0.096	[NR] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1763	chr1	154416804	154416805	rs139952834	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs139952834-C	0.986921	2E-9		0.0577392	[0.039-0.077] unit decrease	NR [NR]	N
1763	chr1	154417828	154417829	rs4845373	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	1q21.3		rs4845373-?	NR	5E-8		1.06	[1.04-1.08]	Illumina [5170515] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q21.3		rs11265613-T	0.579	3E-16				Affymetrix [10369434] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q21.3	IL6R	rs11265613-?		8E-38		0.0574	[0.049-0.066] unit decrease	Illumina [31500000] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q21.3	IL6R	rs11265613-C	0.420467	1E-15		0.01790136	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q21.3	IL6R	rs11265613-C	0.420514	8E-17		0.020476	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q21.3	IL6R	rs11265613-C	0.420557	5E-15		0.017792854	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs11265613-C	0.40518	1E-23				Affymetrix, Illumina [23467995] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q21.3	NR	rs11265613-?	NR	5E-93	(IL-6 sRa)			Illumina [~ 4000000] (imputed)	N
1763	chr1	154418414	154418415	rs11265613	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	NR	rs11265613-?	NR	1E-239	(EA, Interleukin-6 receptor subunit alpha)			Affymetrix [509946]	N
1763	chr1	154418748	154418749	rs4576655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	1q21.3		rs4576655-T	NR	3E-13		0.1122	[0.082-0.142] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1763	chr1	154418878	154418879	rs4537545	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	1q21.3	IL6R	rs4537545-T	0.39366	1E-122		0.090997	[0.082-0.1] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1763	chr1	154418878	154418879	rs4537545	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q21.3	NR	rs4537545-?	NR	3E-19		0.07485344	[0.058-0.091] unit decrease	Illumina [30861016] (imputed)	N
1763	chr1	154418878	154418879	rs4537545	19567438	Elliott P	2009-07-01	JAMA	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals	13,615 European ancestry and Indian Asian ancestry Individuals	1q21.3	IL6R	rs4537545-T	NR	2E-14		11.5	[8.5-14.4] % decrease	Affymetrix, Illumina, Perlegen [~ 1400000] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q21.3		rs12730935-A	NR	1E-45		0.0289	[0.025-0.033] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q21.3		rs12730935-A	NR	9E-315		0.0827	[0.078-0.087] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q21.3	IL6R	rs12730935-G	0.592278	2E-61		0.00378274	[0.0033-0.0042] unit increase	Affymetrix [13995440] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q21.3	IL6R	rs12730935-G	0.59	2E-31		11.7	z-score increase	Affymetrix [4311822] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q21.3	IL6R	rs12730935-A	0.407808	2E-15		0.017914418	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr1	154419891	154419892	rs12730935	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	1q21.3	IL6R	rs12730935-?	NR	2E-53	(Interleukin-6R (IL-6R))			Illumina [up to 10879115] (imputed)	N
1763	chr1	154420024	154420028	rs200586940	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q21.3	IL6R	rs200586940-?	NR	4E-6		0.0235299	[0.014-0.033] unit increase	Illumina [13519193] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1q21.3		rs61812598-A	0.3915	4E-17		1.1		Affymetrix, Illumina [9397031] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs61812598-G	0.590829	3E-436		0.0914524	[0.087-0.095] unit increase	NR [NR]	N
1763	chr1	154420086	154420087	rs61812598	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q21.3	IL6R	rs61812598-A	0.38	2E-126	(BMI-adjusted)	0.094	[0.086-0.102] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q21.3	IL6R	rs61812598-A	0.38	1E-100		0.09	[0.082-0.098] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		1q21.3	IL6R	rs61812598-?	NR	2E-28		0.0114	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	1q21.3	IL6R	rs61812598-A	0.39	3E-36		0.0115	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1763	chr1	154420086	154420087	rs61812598	25340798	Kauwe JS	2014-10-23	PLoS Genet	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	Cerebrospinal fluid levels of Alzheimer's disease-related proteins	574 individuals	NA	1q21.3	IL6R, TDRD10, SHE, UBE2Q1, ADAR	rs61812598-G	NR	6E-63	(Interleukin-6 receptor)			Illumina [5815690] (imputed)	N
1763	chr1	154420401	154420402	rs7512646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q21.3		rs7512646-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1763	chr1	154421437	154421438	rs12404927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q21.3		rs12404927-C	NR	1E-10		0.0618	[0.043-0.081] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1763	chr1	154422066	154422067	rs4845625	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q21.3	IL6R	rs4845625-?	NR	6E-17		0.040684	[0.031-0.05] unit decrease	Illumina [4804024] (imputed)	N
1763	chr1	154422066	154422067	rs4845625	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q21.3	IL6R	rs4845625-T	0.4338	7E-15		0.0395	[0.03-0.049] unit increase	Affymetrix [at least 7947838] (imputed)	N
1763	chr1	154422066	154422067	rs4845625	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q21.3	IL6R	rs4845625-T	0.436	6E-16		0.0448	[0.034-0.056] unit increase	NR [8041861] (imputed)	N
1763	chr1	154423763	154423764	rs12129500	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1q21.3	IL6R	rs12129500-T	0.46	3E-9		1.05	[1.02-1.07]	Illumina [5167567] (imputed)	N
1763	chr1	154423763	154423764	rs12129500	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.3	IL6R	rs12129500-T	0.43	1E-9	(EA)	1.05		Affymetrix, Illumina [up to 12149979] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IL 6r plasma levels	400 French ancestry individuals	NA	1q21.3		rs12126142-G	NR	4E-36		0.279	[0.24-0.31] ng/mL increase	Illumina [5201092] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q21.3		rs12126142-A	NR	3E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q21.3	NR	rs12126142-a	0.3617	6E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [16201029] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1q21.3		rs12126142-A	NR	1E-10		0.93	[0.91-0.95]	NR [13810676] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 receptor subunit alpha levels	21,758 European ancestry individuals	9,173 individuals	1q21.3		rs12126142-A	0.39	4E-5877		0.9662	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q21.3	IL6R	rs12126142-A	0.408668	2E-10		0.014504649	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr1	154425455	154425456	rs12126142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q21.3	IL6R	rs12126142-A	0.408629	7E-15		0.017570466	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q21.3	IL6R	rs4129267-T	0.4	1E-17				NR [> 9500000] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q21.3	NR	rs4129267-?	NR	1E-33		0.1090762	[0.091-0.127] unit decrease	Illumina [30861016] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q21.3		rs4129267-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q21.3	IL6R	rs4129267-C	0.39	1E-129		0.088	[0.08-0.096] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1q21.3	IL6R	rs4129267-A	0.3672	2E-26		0.1197	[0.098-0.142] unit decrease	Illumina [~ 200000]	N
1763	chr1	154426263	154426264	rs4129267	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	IL6R	rs4129267-T	0.4	7E-1101	(Interleukin-6 receptor subunit alpha, IL6R.4139.71.2)	1.11	[1.07-1.15] unit increase	Affymetrix [10572788] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	IL6R	rs4129267-T	0.4	6E-1040	(Interleukin-6 receptor subunit alpha, IL6R.8092.29.3)	1.1	[1.06-1.14] unit increase	Affymetrix [10572788] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1q21.3	NR	rs4129267-C	0.35	8E-7				Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1q21.3	IL6R	rs4129267-T	0.36	2E-297		0.81	unit increase	Illumina [5270624] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	IL6R	rs4129267-T	0.3805221	2E-265	(Interleukin-6 receptor subunit alpha)	1.208	[1.16-1.26] unit increase	Affymetrix [509946]	N
1763	chr1	154426263	154426264	rs4129267	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q21.3	IL6R	rs4129267-?	NR	9E-18	(subset analysis)			Illumina [130052]	N
1763	chr1	154426263	154426264	rs4129267	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	Interleukin-6 receptor subunit alpha levels	up to 653 individuals	up to 317 individuals	1q21.3	IL6RA	rs4129267-T	0.33414	4E-58		0.84	[0.74-0.94] unit increase	Illumina [4840842] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1q21.3	IL6R	rs4129267-T	0.39	6E-27	(EA)	0.011	[0.009-0.013] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q21.3	IL6R	rs4129267-C	0.592	3E-13		1.14		Illumina [128935]	N
1763	chr1	154426263	154426264	rs4129267	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q21.3	IL6R	rs4129267-C	0.592	2E-15	(EA)	1.18		Illumina [128935]	N
1763	chr1	154426263	154426264	rs4129267	21907864	Ferreira MA	2011-09-10	Lancet	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	1q21.3	IL6R	rs4129267-T	0.37	2E-8		1.09	[1.06-1.12]	Illumina [NR] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	1q21.3	IL6R	rs4129267-C	NR	2E-48		0.079	[0.07-0.09] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1763	chr1	154426263	154426264	rs4129267	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q21.3	IL6R	rs4129267-?	0.37	2E-57	(sIL-6R)			Illumina [496032]	N
1763	chr1	154426263	154426264	rs4129267	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	1q21.3	IL6R	rs4129267-?	NR	7E-6	(ppFEF)			Affymetrix [70897]	N
1763	chr1	154426969	154426970	rs2228145	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	1q21.3	IL6R	rs2228145-C	0.407	8E-11		0.026	[0.018-0.034] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 levels	21,758 European ancestry individuals	9,173 individuals	1q21.3		rs2228145-A	0.62	7E-62		0.156	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q21.3	IL6R	rs2228145-C	0.40924	3E-19		0.020079639	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q21.3	NR	rs2228145-C	0.4108	7E-13		1.044	[1.032-1.056]	Affymetrix [15688218] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q21.3	NR	rs2228145-C	0.4108	1E-12		1.04	[1.03-1.051]	Affymetrix [15688218] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q21.3	NR	rs2228145-?	NR	4E-10		0.01670492	[0.011-0.022] unit increase	Illumina [30613845] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q21.3	NR	rs2228145-?	NR	9E-34		0.1091864	[0.092-0.127] unit decrease	Illumina [30861016] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs2228145-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q21.3	IL6R	rs2228145-A	NR	3E-9		0.0792409	[0.053-0.105] unit increase	Illumina [8380626] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q21.3	IL6R	rs2228145-A	0.6	5E-6	(EA)	0.07194	[0.041-0.103] unit increase	Illumina [8380626] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	IL6R	rs2228145-A	0.5828125	8E-450	(IL6R, 4139_71_2)	0.9926965	[0.96-1.03] unit decrease	Illumina [> 1000000] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q21.3	IL6R	rs2228145-A	0.5828125	8E-427	(IL6R, 8092_29_3)	0.97291636	[0.94-1.01] unit decrease	Illumina [> 1000000] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q21.3	IL6R	rs2228145-C	0.35	4E-13		1.038	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q21.3	NR	rs2228145-C	NR	7E-29	(Interleukin-6 receptor subunit alpha)			Illumina [514227]	N
1763	chr1	154426969	154426970	rs2228145	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	1q21.3	IL6R	rs2228145-C	NR	5E-10	(EA, fixed effects)	1.08	[1.05-1.11]	Illumina [15539996] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1q21.3	IL6R	rs2228145-A	0.6	1E-7		1.0869565	[1.05-1.12]	Illumina [133816] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q21.3	IL6R	rs2228145-A	0.6	5E-6	(EA)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1763	chr1	154426969	154426970	rs2228145	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q21.3	IL6R	rs2228145-A	0.6	4E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	83,025 East Asian ancestry individuals	NA	1q21.3		rs12133641-G	0.392677	4E-17		0.040349	[0.031-0.05] unit decrease	Illumina [13470202] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1q21.3		rs12133641-G	NR	3E-10		0.0505	[0.035-0.066] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q21.3	NR	rs12133641-A	0.590058	1E-16				Affymetrix, Illumina [22063850] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	1q21.3	IL6R	rs12133641-?	NR	2E-14		0.04067	[0.03-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q21.3	IL6R	rs12133641-A	0.603	3E-11		0.043	[0.029-0.057] unit increase	Affymetrix [7947838] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.3	NR	rs12133641-?	NR	3E-73	(IL6RA)	0.947767	[0.85-1.05] unit increase	Illumina [11901634] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q21.3	IL6R	rs12133641-G	0.395	2E-7		0.0276866	[0.017-0.038] unit increase	Illumina [13520550] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q21.3	IL6R	rs12133641-G	0.395	9E-9		0.0214112	[0.014-0.029] unit decrease	Illumina [13520550] (imputed)	N
1763	chr1	154428282	154428283	rs12133641	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	1q21.3	IL6R	rs12133641-A	NR	5E-13		1.14	[1.10-1.18]	Affymetrix, Illumina [5363770] (imputed)	N
1763	chr1	154428504	154428505	rs6694258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q21.3		rs6694258-A	NR	2E-8		0.0465	[0.03-0.063] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1763	chr1	154428504	154428505	rs6694258	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1q21.3	IL6R	rs6694258-C	0.444189	4E-10		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
1763	chr1	154430091	154430092	rs11265618	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	1q21.3	IL6R	rs11265618-T	0.182265	3E-19		0.04729	[0.036-0.059] unit decrease	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1763	chr1	154432876	154432877	rs6690230	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	1q21.3	IL6R	rs6690230-C	0.41	1E-6		1.23	[1.13-1.34]	Illumina [at least 106525] (imputed)	N
1763	chr1	154432947	154432948	rs6698040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q21.3	NR	rs6698040-C	NR	1E-12		0.0201	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr1	154432947	154432948	rs6698040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs6698040-C	NR	9E-58		0.0454	[0.04-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr1	154437895	154437896	rs2229238	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q21.3	IL6R	rs2229238-C	0.813	1E-12		0.896		Illumina [715631] (imputed)	N
1763	chr1	154437895	154437896	rs2229238	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q21.3	IL6R	rs2229238-C	0.813	1E-12		0.896		Illumina [715631] (imputed)	N
1763	chr1	154437895	154437896	rs2229238	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	1q21.3	ILR6	rs2229238-?	NR	7E-7		1.45	[NR]	Affymetrix [~ 5000000] (imputed)	N
1763	chr1	154442959	154442960	rs11265621	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1q21.3		rs11265621-G	0.354576	4E-8		0.0238663	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1763	chr1	154443268	154443269	rs139460294	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs139460294-T	0.984334	8E-10		0.0502143	[0.034-0.066] unit increase	NR [NR]	N
1763	chr1	154462359	154462360	rs12044132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs12044132-T	NR	9E-59		0.0527	[0.046-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1763	chr1	154487059	154487060	rs12740969	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q21.3	NR	rs12740969-?	NR	2E-18		0.02385795	[0.019-0.029] unit increase	Illumina [30613845] (imputed)	N
1763	chr1	154505105	154505106	rs77994623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs77994623-T	NR	4E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1763	chr1	154505105	154505106	rs77994623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs77994623-T	NR	3E-50		0.0476	[0.041-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1763	chr1	154510154	154510155	rs116805289	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs116805289-C	NR	1E-13		0.0601	[0.044-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1763	chr1	154512494	154512495	rs61811362	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL6R	5,364 Icelandic ancestry individuals	NA	1q21.3		rs61811362-A	0.2105	3E-27		0.249829	[0.2-0.3] unit decrease	Illumina [7506463] (imputed)	N
1763	chr1	154514266	154514267	rs41310893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs41310893-T	NR	6E-16		0.045	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1763	chr1	154514337	154514338	rs4845648	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL6R	5,366 Icelandic ancestry individuals	NA	1q21.3		rs4845648-T	0.2103	1E-29		0.262837	[0.22-0.31] unit decrease	Illumina [7506463] (imputed)	N
1763	chr1	154522393	154522394	rs72698179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q21.3		rs72698179-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1764	chr1	154534616	154534617	rs6686197	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs6686197-C	0.6545	3E-44		0.2298	[0.2-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1764	chr1	154534616	154534617	rs6686197	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs6686197-C	0.6563	4E-10		0.1018	[0.07-0.134] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1764	chr1	154534616	154534617	rs6686197	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q21.3		rs6686197-C	0.6443	2E-82		0.2179	[0.2-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1764	chr1	154534765	154534766	rs9427089	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q21.3		rs9427089-A	0.1347	3E-11		0.1103	[0.078-0.143] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1764	chr1	154534765	154534766	rs9427089	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q21.3		rs9427089-A	0.1321	1E-14		0.1088	[0.081-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1764	chr1	154539155	154539156	rs78038982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs78038982-T	NR	4E-11		0.0609	[0.043-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1764	chr1	154548276	154548277	rs202079239	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	1q21.3	CHRNB2	rs202079239-G	2.6E-4	4E-7	(EA)	5.066	unit increase (z score)	Illumina [179215]	N
1764	chr1	154548520	154548521	rs2072659	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	1q21.3	CHRNB2	rs2072659-G	0.102	4E-8		0.0369	[0.024-0.05] unit decrease	Illumina [~ 250000] (imputed)	N
1764	chr1	154548520	154548521	rs2072659	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	1q21.3	NR	rs2072659-G	0.0986	3E-13		0.029984204	[0.022-0.038] unit decrease	NR [~ 10000000] (imputed)	N
1764	chr1	154548520	154548521	rs2072659	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1q21.3	NR	rs2072659-G	0.0986	7E-16		0.0314007	[0.024-0.039] unit decrease	NR [9732723] (imputed)	N
1764	chr1	154548720	154548721	rs2072660	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q21.3		rs2072660-T	0.238626	5E-8		0.0250234	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1764	chr1	154548945	154548946	rs4292956	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (itching)	676 Japanese ancestry female cases, 5,058 Japanese ancestry female controls	669 Japanese ancestry female cases, 4,945 Japanese ancestry female controls	1q21.3	NR	rs4292956-T	0.125211826	4E-6		0.26691648	[0.15-0.38] unit increase	Affymetrix [536506]	N
1764	chr1	154555732	154555733	rs9616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1q21.3		rs9616-A	0.706265	2E-9		0.0272087	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1764	chr1	154555732	154555733	rs9616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q21.3		rs9616-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1764	chr1	154555732	154555733	rs9616	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.3	NR	rs9616-?	NR	2E-27	(IL6RA)	0.6514	[0.53-0.77] unit increase	Illumina [11901634] (imputed)	N
1764	chr1	154556662	154556663	rs1127311	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	1q21.3	ADAR	rs1127311-A	NR	6E-9				NR [25015711] (imputed)	N
1764	chr1	154563735	154563735	rs746303202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q21.3	NR	rs746303202-A	0.698349	2E-10		0.020142	[0.014-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1764	chr1	154565518	154565519	rs11264223	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs11264223-?	NR	4E-9		0.0119615	[0.008-0.0159] unit decrease	NR [6912294] (imputed)	N
1764	chr1	154566224	154566225	rs78062588	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q21.3	NR	rs78062588-C	0.0735	2E-9		0.0125545	[0.0085-0.0166] unit decrease	NR [9732723] (imputed)	N
1764	chr1	154566224	154566225	rs78062588	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1q21.3	ADAR	rs78062588-T	0.941769014	5E-7		1.1326951	[1.08-1.19]	Illumina [10439017] (imputed)	N
1764	chr1	154566931	154566932	rs77801962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs77801962-C	NR	2E-19		0.0643	[0.05-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1764	chr1	154567698	154567699	rs10908419	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs10908419-G	0.510067	7E-10		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
1764	chr1	154575314	154575315	rs3738030	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q21.3	NR	rs3738030-?	NR	5E-7		5.044	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1764	chr1	154575684	154575685	rs61300392	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1q21.3	NR	rs61300392-T	0.0764	3E-8		0.0152515	[0.0099-0.0206] unit increase	NR [9732723] (imputed)	N
1764	chr1	154582754	154582754	rs71586027	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q21.3	NR	rs71586027-TATCTC	0.480291	2E-22		0.0106373	[0.0084-0.0129] unit increase	Affymetrix [16582621] (imputed)	N
1764	chr1	154582754	154582754	rs71586027	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q21.3	NR	rs71586027-TATCTC	0.480291	2E-19		0.010307	[0.0079-0.0127] unit increase	Affymetrix [16582614] (imputed)	N
1764	chr1	154589231	154589232	rs9427104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q21.3	NR	rs9427104-T	0.47875100000000004	9E-53		0.0122622	[0.011-0.014] unit increase	Affymetrix [16582909] (imputed)	N
1764	chr1	154589231	154589232	rs9427104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q21.3	NR	rs9427104-T	0.47875100000000004	2E-41		0.0119807	[0.01-0.014] unit increase	Affymetrix [16582965] (imputed)	N
1764	chr1	154589964	154589965	rs9426827	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q21.3	ADAR	rs9426827-T	0.521904	3E-18		0.0170499	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1764	chr1	154592139	154592140	rs962242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs962242-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1764	chr1	154592200	154592201	rs9426829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q21.3	NR	rs9426829-C	0.48072899999999996	2E-30		0.0139276	[0.012-0.016] unit increase	Affymetrix [16585854] (imputed)	N
1764	chr1	154592200	154592201	rs9426829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q21.3	NR	rs9426829-C	0.48072899999999996	1E-22		0.0140092	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
1764	chr1	154605032	154605032	rs5777924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	1q21.3		rs5777924-TA	NR	4E-10		0.0512	[0.035-0.067] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1764	chr1	154608875	154608875	rs553620963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ADAR	rs553620963-G	0.981886	4E-8	(70 ms)	0.141041	[0.091-0.191] unit increase	Affymetrix [10000000] (imputed)	N
1764	chr1	154608875	154608875	rs553620963	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ADAR	rs553620963-G	0.981886	1E-8	(84 ms)	0.151525	[0.1-0.2] unit increase	Affymetrix [10000000] (imputed)	N
1764	chr1	154618622	154618623	rs77710113	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1q21.3	KCNN3, ADAR	rs77710113-T	0.941966797	6E-6		1.193753	[1.11-1.29]	Illumina [10439017] (imputed)	N
1764	chr1	154630497	154630498	rs10796927	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	1q21.3	IL6R, ADAR, KCNN3	rs10796927-C	0.285128	4E-13		0.034157	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1764	chr1	154630497	154630498	rs10796927	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1q21.3	NR	rs10796927-?		2E-17	(IL6R)	0.3577	[NR] unit increase	Illumina [NR]	N
1764	chr1	154631122	154631123	rs9427116	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q21.3	Intergenic	rs9427116-T	0.4899598	1E-14	(EA, Interleukin-6 receptor subunit alpha)	0.3392	[0.25-0.42] unit decrease	Affymetrix [509946]	N
1764	chr1	154642223	154642224	rs60517797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs60517797-C	NR	7E-14		0.0325	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1764	chr1	154653950	154653951	rs61811421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs61811421-T	NR	1E-43		0.0396	[0.034-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1764	chr1	154656974	154656975	rs3856270	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs3856270-G	0.521584	3E-17		0.0177088	[0.014-0.022] unit increase	NR [NR]	N
1764	chr1	154657904	154657905	rs12131108	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q21.3	NR	rs12131108-?	NR	1E-10	(IL6RA)	0.321632	[0.22-0.42] unit decrease	Illumina [11901634] (imputed)	N
1764	chr1	154661368	154661369	rs34693607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs34693607-G	NR	1E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1764	chr1	154661368	154661369	rs34693607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs34693607-G	NR	5E-30		0.0334	[0.028-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1765	chr1	154669066	154669067	rs11264244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	1q21.3		rs11264244-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1765	chr1	154671127	154671128	rs55997241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs55997241-A	NR	5E-12		0.0315	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1765	chr1	154673232	154673233	rs4845661	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-6 receptor subunit alpha levels	21,758 European ancestry individuals	9,173 individuals	1q21.3		rs4845661-C	0.91	2E-19		0.1232	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1765	chr1	154685540	154685541	rs16830122	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	1q21.3	KCNN3	rs16830122-A	0.13	2E-6		1.17	[1.10-1.25]	NR [NR]	N
1765	chr1	154699196	154699197	rs77994054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q21.3	NR	rs77994054-T	NR	4E-9		0.0522	[0.035-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1765	chr1	154714005	154714006	rs4999127	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q21.3	KCNN3	rs4999127-A	0.839	2E-23		1.1	[1.08-1.12]	Illumina [34740186] (imputed)	N
1765	chr1	154714005	154714006	rs4999127	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.3	KCNN3	rs4999127-A	0.86	6E-16	(EA)	1.09		Affymetrix, Illumina [up to 12149979] (imputed)	N
1765	chr1	154742981	154742982	rs538633861	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q21.3	KCNN3	rs538633861-A	0.0025	5E-6		1.0803	[0.62-1.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1765	chr1	154753399	154753400	rs142567407	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		KCNN3	rs142567407-?	NR	7E-9	(female)	0.524475	[NR] unit increase	Affymetrix [NR] (imputed)	N
1765	chr1	154754193	154754194	rs6691316	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	KCNN3	rs6691316-G	0.318	9E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1765	chr1	154754193	154754194	rs6691316	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q21.3	KCNN3	rs6691316-G	0.318	7E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
1765	chr1	154775243	154775244	rs61811867	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	1q21.3	NR	rs61811867-?	NR	1E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1765	chr1	154792268	154792269	rs2798603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q21.3		rs2798603-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1765	chr1	154793762	154793763	rs951240	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs951240-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1766	chr1	154797271	154797272	rs16836414	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q21.3		rs16836414-G	NR	7E-6		2.2232	[1.27-3.17] unit increase	Illumina [NR] (imputed)	N
1766	chr1	154812399	154812400	rs34292822	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.3	KCNN3	rs34292822-C	0.31	1E-56	(EA)	1.14		Affymetrix, Illumina [up to 12149979] (imputed)	N
1766	chr1	154813618	154813619	rs6426985	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1q21.3	DCST2, KCNN3	rs6426985-A	0.44222399999999995	3E-8		0.016914	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1766	chr1	154813618	154813619	rs6426985	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q21.3	DCST2, KCNN3	rs6426985-A	0.44002399999999997	7E-11		0.016948	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1766	chr1	154814267	154814268	rs6666258	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	1q21.3	KCNN3, PMVK	rs6666258-C	0.30	2E-14		1.18	[1.13-1.23]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1766	chr1	154814352	154814353	rs13376333	20173747	Ellinor PT	2010-02-21	Nat Genet	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	1q21.3	KCNN3	rs13376333-T	0.30	2E-21		1.52	[1.40-1.64]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1766	chr1	154818402	154818403	rs36004974	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		1q21.3	KCNN3	rs36004974-G	0.32	4E-10		1.14	1.1-1.19	Affymetrix, Illumina [at least 3187278] (imputed)	N
1766	chr1	154827090	154827091	rs146787591	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q21.3	KCNN3	rs146787591-A	0.0013	9E-6		0.9857	[0.55-1.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1766	chr1	154831142	154831143	rs34245846	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	1q21.3	KCNN3	rs34245846-G	0.302	7E-9		1.14	[1.09-1.19]	Illumina [8952551] (imputed)	N
1766	chr1	154834182	154834183	rs1218582	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1q21.3	NR	rs1218582-G	0.45	1E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1766	chr1	154834182	154834183	rs1218582	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	1q21.3	ADAM15, ADAR, CKS1B, DCST1, DCST2, EFNA3, EFNA4, LOC10050, FLAD1, KCNN3, LENEP, LOC100505666, MIR4258, PBXIP1, DPM3, PYGO2, EFNA1, SHC1, SLC50A1, ZBTB7B, PMVK	rs1218582-G	0.45	2E-8		1.06	[1.03-1.09]	Illumina [~ 2600000] (imputed)	N
1766	chr1	154836443	154836444	rs79810698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	KCNN3	rs79810698-A	NR	5E-10		0.0425481	[0.029-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1766	chr1	154836443	154836444	rs79810698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	KCNN3	rs79810698-A	NR	2E-9		0.0409047	[0.027-0.054] unit decrease	Affymetrix [319769] (imputed)	N
1766	chr1	154837938	154837939	rs116839452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs116839452-G	NR	4E-9		0.0744	[0.05-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1766	chr1	154845533	154845534	rs11264278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q21.3		rs11264278-C	NR	4E-41		0.1396	[0.12-0.16] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1766	chr1	154848580	154848581	rs72702209	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.3	NR	rs72702209-C	0.0230684	5E-11		0.145326	[0.1-0.19] unit increase	Affymetrix [17914406] (imputed)	N
1766	chr1	154849770	154849771	rs12069356	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q21.3	NR	rs12069356-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1766	chr1	154853976	154853977	rs7517628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q21.3		rs7517628-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1766	chr1	154855054	154855055	rs1630500	24842889	Vacic V	2014-05-19	Hum Mol Genet	Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.	Parkinson's disease	1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls	306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls	1q21.3	GBA	rs1630500-?	0.045	2E-8		1.75	[1.43-2.15]	Affymetrix, Illumina [1069161] (imputed)	N
1766	chr1	154856890	154856891	rs77243303	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q21.3	NR	rs77243303-C	0.982848	9E-11		0.0501007	[0.035-0.065] unit decrease	NR [NR]	N
1766	chr1	154862951	154862952	rs11264280	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q21.3	KCNN3	rs11264280-T	0.333	3E-79		1.14	[1.13-1.16]	Illumina [34740186] (imputed)	N
1766	chr1	154862951	154862952	rs11264280	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.3	KCNN3, PMVK	rs11264280-T	0.32	1E-57	(EA)	1.14	[1.12-1.16]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1766	chr1	154862951	154862952	rs11264280	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q21.3	KCNN3, PMVK	rs11264280-T	0.31	5E-59		1.14	[1.12-1.15]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1766	chr1	154862951	154862952	rs11264280	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Incident atrial fibrillation	7,323 European ancestry cases, 102,776 European ancestry controls.		1q21.3	KCNN3	rs11264280-T	0.32	4E-9		1.12	1.08-1.16	Affymetrix, Illumina [at least 3187278] (imputed)	N
1766	chr1	154862951	154862952	rs11264280	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	1q21.3	KCNN3	rs11264280-T	0.32	3E-17		1.13	[1.10-1.16]	Affymetrix, Illumina [11795432] (imputed)	N
1766	chr1	154862951	154862952	rs11264280	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	1q21.3	KCNN3	rs11264280-T	0.31	4E-15		1.23	[1.17-1.30]	Affymetrix, Illumina [11795432] (imputed)	N
1766	chr1	154866092	154866093	rs4845399	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q21.3	KCNN3, PMVK, PBXIP1, PYGO2, SHC1, CKS1B, MIR4258, FLAD1, LENEP, ZBTB7B, DCST2, DCST1, LOC100505666, ADAM15	rs4845399-T	0.358	1E-6		1.05823	[1.04-1.08]	NR [9372253] (imputed)	N
1766	chr1	154868743	154868744	rs114056923	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q21.3	KCNN3	rs114056923-C	NR	1E-10		0.0512004	[0.036-0.067] unit decrease	Affymetrix [321169] (imputed)	N
1766	chr1	154878713	154878714	rs114812453	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1q21.3		rs114812453-?	NR	3E-7		1.1204998	[1.07257431508367-1.17056692889848]	Illumina [up to 7827597] (imputed)	N
1766	chr1	154881109	154881110	rs1218596	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Urinary incontinence	2,942 European ancestry cases, 6,037 European ancestry controls	2,065 European ancestry cases, 2,004 European ancestry controls	1q21.3		rs1218596-T	NR	4E-6		0.64	[0.55-0.75]	Illumina [9700000] (imputed)	N
1766	chr1	154898184	154898185	rs114138760	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q21.3	PMVK	rs114138760-C	0.0112	4E-9		0.2812	[0.19-0.37] unit increase	NR [7784415] (imputed)	N
1766	chr1	154910929	154910930	rs58629129	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	1q21.3		rs58629129-C	NR	3E-8		1.0864842	NR	Affymetrix [7846216] (imputed)	N
1766	chr1	154918351	154918352	rs41264253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs41264253-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1766	chr1	154922598	154922599	rs147350405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q21.3		rs147350405-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1766	chr1	154924014	154924015	rs116114495	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1q21.3		rs116114495-?	NR	8E-7		1.1064724	[1.0628756826413-1.15185734357472]	Illumina [up to 7827597] (imputed)	N
1767	chr1	154934962	154934963	rs3766920	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	1q21.3	PMVK, PBXIP1, PYGO2, SHC1	rs3766920-A	0.08	2E-9		1.35	[1.22 -1.49]	Illumina [522285]	N
1767	chr1	154938661	154938662	rs8191979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	SHC1	rs8191979-C	NR	3E-8		0.0449856	[0.029-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154938661	154938662	rs8191979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	SHC1	rs8191979-C	NR	4E-8		0.0444365	[0.029-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154938661	154938662	rs8191979	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q21.3	SHC1	rs8191979-C		4E-23		0.061	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1767	chr1	154941262	154941263	rs8191981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	1q21.3		rs8191981-A	0.041357	9E-57		0.176066	[0.15-0.2] unit decrease	Illumina [13470073] (imputed)	N
1767	chr1	154941262	154941263	rs8191981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q21.3		rs8191981-A	NR	4E-57		0.1765	[0.15-0.2] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1767	chr1	154941262	154941263	rs8191981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	1q21.3	NR	rs8191981-G	0.959059	6E-54		0.187007	[0.16-0.21] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1767	chr1	154941262	154941263	rs8191981	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	1q21.3	SHC1	rs8191981-?	NR	4E-37		0.1882	[0.16-0.22] unit decrease novel	Illumina [6108953] (imputed)	N
1767	chr1	154965112	154965113	rs7535144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q21.3	NR	rs7535144-T	NR	1E-9		0.0404	[0.027-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	154968259	154968260	rs7525164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q21.3	FLAD1, LENEP	rs7525164-T	0.029432	6E-21		0.061924275	[0.049-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1767	chr1	154976517	154976518	rs113405739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q21.3	ZBTB7B	rs113405739-G	0.028828	9E-24		0.0667101	[0.054-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1767	chr1	154976517	154976518	rs113405739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q21.3	ZBTB7B	rs113405739-G	0.0288350000000001	4E-24		0.06720668	[0.054-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1767	chr1	154977928	154977929	rs4845402	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q21.3	FLAD1, ZBTB7B, EFNA3, EFNA1, SLC50A1, KRTCAP2	rs4845402-?		5E-13				Affymetrix, Illumina [NR] (imputed)	N
1767	chr1	154980340	154980341	rs12142017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs12142017-C	NR	9E-14		0.0395243	[0.029-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154980340	154980341	rs12142017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs12142017-C	NR	9E-14		0.0394692	[0.029-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154980340	154980341	rs12142017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs12142017-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1767	chr1	154980350	154980351	rs56103503	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q21.3	NR	rs56103503-T	NR	2E-14		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ZBTB7B, DCST2	rs1870940-G	0.737213	4E-8	(92 ms)	0.0334846	[0.021-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ZBTB7B, DCST2	rs1870940-G	0.737213	4E-10	(94 ms)	0.0381262	[0.026-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ZBTB7B, DCST2	rs1870940-G	0.737213	3E-9	(96 ms)	0.0357118	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ZBTB7B, DCST2	rs1870940-G	0.737213	3E-8	(108 ms)	0.0332626	[0.021-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q21.3	ZBTB7B, DCST2	rs1870940-G	0.737213	2E-9	(106 ms)	0.0364258	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	1q21.3		rs1870940-G	NR	2E-7				Affymetrix [7846216] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q21.3	NR	rs1870940-G	0.727848	3E-12		0.0104433	[0.0076-0.0133] unit increase	Affymetrix [16578495] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q21.3	NR	rs1870940-G	0.727398	5E-17		0.0253915	[0.019-0.032] unit increase	Affymetrix [16580851] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1q21.3	ZBTB7B	rs1870940-A	0.272663	8E-11		1.0638298	[1.04-1.09]	Affymetrix [7600000] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1q21.3	ZBTB7B	rs1870940-A	0.247783	3E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1767	chr1	154984362	154984363	rs1870940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q21.3		rs1870940-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1767	chr1	154986090	154986091	rs3753639	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q21.3	ZBTB7B	rs3753639-T	0.756236	7E-13		0.0114965	[0.0084-0.0146] unit decrease	Affymetrix [12370749]	N
1767	chr1	154986090	154986091	rs3753639	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q21.3	NR	rs3753639-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1767	chr1	154986090	154986091	rs3753639	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	1q21.3	ZBTB7B	rs3753639-C	0.23	1E-12		0.031	[0.022-0.04] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1767	chr1	154987703	154987704	rs141845046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs141845046-T	NR	3E-15		0.0771844	[0.058-0.096] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154987703	154987704	rs141845046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs141845046-T	NR	2E-14		0.0748014	[0.056-0.094] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154987703	154987704	rs141845046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs141845046-T	NR	1E-12		0.0700843	[0.051-0.089] unit decrease	Affymetrix [321169] (imputed)	N
1767	chr1	154987703	154987704	rs141845046	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	1q21.3	ZBTB7B	rs141845046-C	0.9772	2E-13		0.0703	[0.051-0.089] unit increase	Affymetrix, Illumina [at least 228985]	N
1767	chr1	154987703	154987704	rs141845046	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	1q21.3	ZBTB7B	rs141845046-C	0.9751	2E-13		0.0707	[0.052-0.09] unit increase	Affymetrix, Illumina [at least 228985]	N
1767	chr1	154987703	154987704	rs141845046	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	1q21.3	ZBTB7B	rs141845046-C	0.9762	4E-8		0.0373	[0.024-0.051] unit increase	Affymetrix, Illumina [at least 228985]	N
1767	chr1	154987703	154987704	rs141845046	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	1q21.3	ZBTB7B	rs141845046-C	0.9733	4E-8		0.0377	[0.024-0.051] unit increase	Affymetrix, Illumina [at least 228985]	N
1767	chr1	154987703	154987704	rs141845046	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1q21.3	ZBTB7B	rs141845046-T	0.0244	8E-18		0.048	[0.036-0.06] unit increase	Illumina [246328]	N
1767	chr1	154988532	154988533	rs77548871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q21.3	ZBTB7B	rs77548871-C	NR	4E-10		0.0446148	[0.031-0.059] unit decrease	Affymetrix [321169] (imputed)	N
1767	chr1	154988532	154988533	rs77548871	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q21.3	NR	rs77548871-C	0.0428823	3E-9		0.143933	[0.097-0.191] unit increase	Affymetrix [21375087] (imputed)	N
1767	chr1	154988532	154988533	rs77548871	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	1q21.3	ZBTB7B	rs77548871-C	0.0472	5E-9		0.0991	[0.066-0.132] unit decrease	Illumina [NR]	N
1767	chr1	154988956	154988957	rs2242195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q21.3		rs2242195-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1767	chr1	154989823	154989823	rs148745415	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q21.3	ZBTB7B	rs148745415-TGGGGGCAGTAGAGGGGGCAGTAGA	NR	2E-8		0.0197908	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
1767	chr1	154990296	154990297	rs2242194	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q21.3	NR	rs2242194-G	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1767	chr1	154991388	154991389	rs905938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	DCST2	rs905938-C	NR	1E-20		0.0295619	[0.023-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154991388	154991389	rs905938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	DCST2	rs905938-C	NR	1E-19		0.0287416	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	154991388	154991389	rs905938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q21.3	DCST2	rs905938-C	NR	1E-8		0.0183569	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1767	chr1	154991388	154991389	rs905938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q21.3	DCST2	rs905938-C	NR	2E-13		0.0237064	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1767	chr1	154991388	154991389	rs905938	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q21.3	DCST2	rs905938-T	0.7351	8E-77		0.0394	[0.035-0.044] unit decrease	Affymetrix [18391927] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	1q21.3	NR	rs905938-T	0.74	7E-13		0.030506749	[0.022-0.039] unit decrease	NR [1977400] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	1q21.3	NR	rs905938-T	0.708	6E-13		0.04604663	[0.034-0.059] unit decrease	NR [1977400] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs905938-?	NR	6E-28				Affymetrix [~ 8270000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	1q21.3	NR	rs905938-T	0.26	5E-13		0.026	[0.018-0.034] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1q21.3	DCST2, KCNN3	rs905938-C	0.26846000000000003	1E-7		0.018027	[0.011-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1767	chr1	154991388	154991389	rs905938	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q21.3	DCST2, KCNN3	rs905938-C	0.26178	3E-19		0.026053	[0.02-0.032] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q21.3		rs905938-?	NR	4E-28				NR [~ 8900000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q21.3	NR	rs905938-T	0.72	2E-36		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q21.3	NR	rs905938-T	0.72	5E-8				Affymetrix [2446094] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q21.3	NR	rs905938-T	0.7233	1E-35		0.0243	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q21.3	NA	rs905938-T	0.7235	8E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q21.3	NR	rs905938-T	0.7235	8E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.3	DCST2	rs905938-T	0.7406	6E-7		0.0225	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q21.3	DCST2	rs905938-T	0.7406	2E-6	(women)	0.0295	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q21.3	NR	rs905938-T	0.734309758354771	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q21.3	NR	rs905938-T	0.734309758354771	4E-10		0.024901243	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1767	chr1	154991388	154991389	rs905938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.3	DCST2	rs905938-T	0.7437	3E-10		0.0249	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1767	chr1	154991388	154991389	rs905938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.3	DCST2	rs905938-T	0.7427	7E-10	(EA)	0.0249	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1767	chr1	154991388	154991389	rs905938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.3	DCST2	rs905938-T	0.7427	5E-10	(EA, women)	0.0337	[0.023-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1767	chr1	154991388	154991389	rs905938	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q21.3	DCST2	rs905938-T	0.7427	3E-10	(women)	0.0333	[0.023-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1767	chr1	154991388	154991389	rs905938	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	1q21.3	DCST2	rs905938-C	0.24	2E-8		0.046	[0.030-0.062] unit increase	Affymetrix, Illumina [2201971] (imputed)	N
1767	chr1	154993374	154993375	rs4845703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs4845703-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1767	chr1	154994749	154994750	rs11264296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q21.3	DCST2	rs11264296-C	0.420117	9E-10		0.0137743475	[0.0094-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1767	chr1	154994749	154994750	rs11264296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q21.3		rs11264296-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q21.3		rs76798800-T	NR	3E-20		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	DCST2	rs76798800-T	NR	1E-12		0.0224515	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1q21.3	DCST2	rs76798800-G	0.753172	2E-18				Affymetrix, Illumina [NR] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1q21.3	DCST2	rs76798800-T	0.2468	4E-15		1.0900371	NR	Affymetrix, Illumina [NR] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs76798800-?	NR	1E-6		0.011124	[0.0066-0.0156] unit decrease	NR [6912294] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q21.3		rs76798800-G	0.733745	8E-6		0.01	[0.0061-0.0139] unit decrease	NR [7250403] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q21.3	NR	rs76798800-T	0.26624	6E-15		0.0848879	[0.063-0.106] unit increase	Affymetrix [21375087] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q21.3	NR	rs76798800-T	0.265829	2E-22		0.0737955	[0.059-0.089] unit increase	Affymetrix [17914406] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.3	NR	rs76798800-?	NR	3E-21		0.23555	[0.19-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.3	NR	rs76798800-?	NR	3E-13	(male)	0.28652	[0.21-0.36] unit increase	Affymetrix [7794483] (imputed)	N
1767	chr1	154994977	154994978	rs76798800	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q21.3	NR	rs76798800-?	NR	1E-10	(female)	0.17659	[0.12-0.23] unit increase	Affymetrix [7794483] (imputed)	N
1767	chr1	154997571	154997572	rs113261881	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q21.3	DCST2	rs113261881-G	0.93705	1E-9		0.0240304	[0.016-0.032] unit increase	Affymetrix [NR] (imputed)	N
1767	chr1	155001280	155001281	rs150138294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	DCST2	rs150138294-A	NR	2E-14		0.056347	[0.042-0.071] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	155001280	155001281	rs150138294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	DCST2	rs150138294-A	NR	1E-13		0.0545532	[0.04-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	155001280	155001281	rs150138294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	DCST2	rs150138294-A	NR	8E-10		0.0450166	[0.031-0.059] unit increase	Affymetrix [321016] (imputed)	N
1767	chr1	155001280	155001281	rs150138294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q21.3	NR	rs150138294-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1767	chr1	155004879	155004880	rs72702251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q21.3	DCST2	rs72702251-A	NR	2E-8		0.0426087	[0.028-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	155004879	155004880	rs72702251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q21.3	DCST2	rs72702251-A	NR	7E-9		0.0439132	[0.029-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1767	chr1	155006449	155006450	rs74520550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q21.3		rs74520550-A	NR	2E-18		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1767	chr1	155006449	155006450	rs74520550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.3	NR	rs74520550-A	NR	6E-11		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1767	chr1	155006449	155006450	rs74520550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs74520550-A	NR	4E-11		0.0206	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155006449	155006450	rs74520550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q21.3	NR	rs74520550-A	NR	4E-12		0.0206	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1767	chr1	155006449	155006450	rs74520550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q21.3		rs74520550-?	NR	1E-32				NR [~ 8900000] (imputed)	N
1767	chr1	155006450	155006451	rs76306191	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	1q21.3	DCST1	rs76306191-G	0.202988627347262	3E-16		0.014109615	unit increase	NR [9276018] (imputed)	N
1767	chr1	155014425	155014426	rs55668940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	1q21.3		rs55668940-A	NR	9E-11		0.077	[0.054-0.1] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1767	chr1	155016126	155016127	rs76735429	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q21.3	NR	rs76735429-?	NR	4E-9				Illumina [7760689] (imputed)	N
1767	chr1	155024094	155024095	rs146564277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q21.3	ADAM15	rs146564277-A	NR	4E-8		0.0565909	[0.036-0.077] unit increase	Affymetrix [321016] (imputed)	N
1767	chr1	155025306	155025307	rs58409393	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 41)	2,595 Tanzanian ancestry individuals	NA	1q21.3		rs58409393-?	NR	2E-8				Illumina [NR] (imputed)	N
1767	chr1	155025360	155025361	rs2306125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.3	NR	rs2306125-C	NR	2E-15		0.025	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155025360	155025361	rs2306125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs2306125-C	NR	1E-24		0.0322	[0.026-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155026941	155026942	rs6427128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs6427128-C	NR	1E-32		0.0411	[0.034-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155026941	155026942	rs6427128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q21.3	NR	rs6427128-C	NR	2E-26		0.0385	[0.031-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155026941	155026942	rs6427128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q21.3	NR	rs6427128-C	NR	2E-12		0.0255	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1767	chr1	155027218	155027219	rs569036944	32936915	Chai JF	2020-09-16	J Clin Endocrinol Metab	Genome-wide association for HbA1c in Malay identified deletion on SLC4A1 that influences HbA1c independent of glycemia.	Glycated hemoglobin levels	2,704 Malay ancestry individuals	NA	1q21.3		rs569036944-A	0.97	1E-8		0.188	[0.12-0.25] unit increase	Illumina [47095002] (imputed)	N
1767	chr1	155028521	155028522	rs11264302	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1q21.3	ADAM15	rs11264302-G	NR	3E-8		0.00705795	[0.0046-0.0095] unit increase	Affymetrix [10061374] (imputed)	N
1767	chr1	155030556	155030557	rs11264303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q21.3	ADAM15	rs11264303-C	0.53389	1E-10		0.014309819	[0.01-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1q21.3		rs11589479-G	0.833045	1E-10		0.0354459	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q21.3		rs11589479-A	0.18	6E-78		18.69	z score increase	Affymetrix [9061022] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q21.3		rs11589479-A	0.18	2E-21		9.52	z score increase	Affymetrix [9061022] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1q21.3		rs11589479-A	NR	1E-8		0.0847	[0.056-0.114] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q21.3		rs11589479-A	NR	2E-42		0.0452	[0.039-0.052] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q21.3	NR	rs11589479-A	0.1651	1E-17				NR [9056863] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1q21.3		rs11589479-?	NR	1E-18				NR [9705931] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	1q21.3		rs11589479-A	0.149526066	4E-9				Illumina [7417619] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q21.3	EFNA4	rs11589479-A	0.1732	3E-11		0.01709262	[0.012-0.022] unit decrease	Illumina [9339358] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q21.3	ADAM15	rs11589479-G	NR	6E-6		0.0319009	[0.018-0.046] unit decrease	Illumina [13520550] (imputed)	N
1767	chr1	155033307	155033308	rs11589479	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	1q21.3	ADAM15	rs11589479-?	NR	5E-11		1.131	[1.090-1.173]	Illumina [13537761] (imputed)	N
1767	chr1	155033917	155033918	rs41264285	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q21.3		rs41264285-C	0.791	7E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1767	chr1	155033917	155033918	rs41264285	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q21.3	ADAM15	rs41264285-T	0.212	4E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1767	chr1	155033917	155033918	rs41264285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q21.3	NR	rs41264285-T	0.213	7E-10		0.00823818	[0.0056-0.0109] unit increase	NR [9732723] (imputed)	N
1767	chr1	155033917	155033918	rs41264285	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1q21.3	ADAM15, EFNA1	rs41264285-?	NR	8E-7		1.14	[1.08-1.20]	Illumina [at least 5000000] (imputed)	N
1767	chr1	155034631	155034632	rs45444697	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q21.3	NR	rs45444697-G	0.212	5E-9	(Conditioned on chr1:154206358)	0.01969015	[0.014-0.026] unit increase	NR [~ 10000000] (imputed)	N
1767	chr1	155034631	155034632	rs45444697	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q21.3	NR	rs45444697-G	0.22	8E-15	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11178.21.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1767	chr1	155046401	155046402	rs72702268	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	1q21.3		rs72702268-?	NR	1E-13				NR [9705931] (imputed)	N
1767	chr1	155046401	155046402	rs72702268	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q21.3	NR	rs72702268-T	0.0231566	4E-12		0.226931	[0.16-0.29] unit increase	Affymetrix [21375087] (imputed)	N
1768	chr1	155058662	155058663	rs17723260	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	1q21.3		rs17723260-?	NR	5E-10		0.00816557	[0.0056-0.0107] unit decrease	NR [NR]	N
1768	chr1	155058662	155058663	rs17723260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs17723260-A	NR	9E-22		0.0331	[0.026-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155058662	155058663	rs17723260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q21.3	NR	rs17723260-A	NR	1E-9		0.0211	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155058662	155058663	rs17723260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs17723260-A	NR	1E-20		0.0322	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155060317	155060318	rs72702273	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q21.3	NR	rs72702273-A	NR	6E-19		0.0416	[0.032-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155066415	155066416	rs10908454	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q21.3		rs10908454-?	NR	2E-7		0.0106306	[0.0066-0.0146] unit decrease	NR [6912294] (imputed)	N
1768	chr1	155071587	155071588	rs57742792	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1q21.3	EFNA3	rs57742792-A	0.51	4E-11		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1768	chr1	155072013	155072014	rs142778503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	1q21.3		rs142778503-T	0.042061	3E-8		0.0678648	[0.044-0.092] unit decrease	Illumina [13469940] (imputed)	N
1768	chr1	155072013	155072014	rs142778503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q21.3		rs142778503-T	NR	3E-8		0.0679	[0.044-0.092] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1768	chr1	155076733	155076734	rs7366355	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	1q22	EFNA3	rs7366355-?	0.51	1E-8		1.0574088	[1.04-1.08]	Affymetrix [NR] (imputed)	N
1768	chr1	155082157	155082158	rs11581730	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	1q22	EFNA1	rs11581730-A	0.496	1E-13		0.296	[0.22-0.37] unit increase	Illumina [8400000] (imputed)	N
1768	chr1	155082157	155082158	rs11581730	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	1q22	EFNA1	rs11581730-A	0.496	3E-16	(EA)	0.294	[0.22-0.36] unit increase	Illumina [8400000] (imputed)	N
1768	chr1	155082157	155082158	rs11581730	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	1q22	EFNA1	rs11581730-A	0.493	7E-17		0.283	[0.22-0.35] unit increase	Illumina [8400000] (imputed)	N
1768	chr1	155082157	155082158	rs11581730	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	1q22	EFNA1	rs11581730-A	0.496	3E-17		0.306	[0.24-0.38] unit increase	Illumina [8400000] (imputed)	N
1768	chr1	155085897	155085898	rs11264321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q22		rs11264321-A	NR	1E-132		0.0548	[0.05-0.059] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1768	chr1	155086570	155086571	rs4303067	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q22	EFNA1	rs4303067-C	0.564072	2E-174		0.014241	[0.013-0.015] unit increase	Affymetrix [13995440] (imputed)	N
1768	chr1	155087410	155087411	rs34455078	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q22	EFNA1	rs34455078-A	NR	6E-6		0.09246136	[0.01-0.175] unit increase	NR [> 6200000] (imputed)	N
1768	chr1	155087932	155087933	rs11264322	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q22		rs11264322-G	0.570235	7E-7		0.01	[0.0061-0.0139] unit decrease	NR [7250403] (imputed)	N
1768	chr1	155089010	155089011	rs76268375	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q22	NR	rs76268375-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1768	chr1	155090104	155090105	rs11264323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q22	Y_RNA	rs11264323-C	0.399656	2E-11		0.015460927	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1768	chr1	155091175	155091176	rs61811931	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1q22	intergenic	rs61811931-C	0.0211	2E-6		0.64121	NR	Affymetrix, Illumina [30341632] (imputed)	N
1768	chr1	155094604	155094605	rs11807418	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q22	MTX1	rs11807418-?	NR	4E-8		0.0142	[0.0097-0.0187] unit increase	Affymetrix [5701386] (imputed)	N
1768	chr1	155095106	155095107	rs11264327	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1q22	EFNA3, EFNA1	rs11264327-A	0.399	7E-9		0.00987	[0.0065-0.0132] unit increase	Affymetrix [11709857] (imputed)	N
1768	chr1	155095749	155095750	rs9330264	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	1q22	EFNA1/SLC50A1	rs9330264-T	0.36	2E-9	(EA)	6.02	z-score increase	Affymetrix [at least 8500000] (imputed)	N
1768	chr1	155098904	155098905	rs11264330	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q22	EFNA1	rs11264330-A	0.06	5E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1768	chr1	155105388	155105388	rs147206915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q22		rs147206915-TTTTG	NR	6E-25		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1768	chr1	155106053	155106054	rs4390169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q22		rs4390169-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	8E-13	(32 ms)	0.0396637	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	7E-13	(34 ms)	0.0396682	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	6E-12	(26 ms)	0.0373009	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	4E-9	(22 ms)	0.0320729	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	4E-8	(20 ms)	0.030252	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	4E-12	(28 ms)	0.038167	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	1E-12	(30 ms)	0.03903	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	EFNA1, SLC50A1, DPM3	rs4745-A	0.495055	1E-10	(24 ms)	0.0348851	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1768	chr1	155106226	155106227	rs4745	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	1q22	NR	rs4745-T	NR	3E-10		0.011927651	[0.0082-0.0156] unit increase	Illumina [242289]	N
1768	chr1	155106226	155106227	rs4745	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	1q22	NR	rs4745-T	0.52	2E-7		0.016	unit decrease	Illumina [242289]	N
1768	chr1	155106696	155106697	rs12904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q22		rs12904-A	NR	3E-38		0.0274	[0.023-0.032] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1768	chr1	155106696	155106697	rs12904	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q22	EFNA1	rs12904-G	0.590057	5E-43		0.00530168	[0.0045-0.0061] unit increase	Affymetrix [13995440] (imputed)	N
1768	chr1	155106696	155106697	rs12904	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q22	EFNA1	rs12904-G	0.59	2E-20		9.25	z-score increase	Affymetrix [4314223] (imputed)	N
1768	chr1	155106696	155106697	rs12904	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q22	EFNA1	rs12904-G	0.59	1E-30		11.5	z-score increase	Affymetrix [4312306] (imputed)	N
1768	chr1	155106696	155106697	rs12904	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q22	EFNA1	rs12904-?		3E-9		0.0347	[0.023-0.046] unit increase	Illumina [31500000] (imputed)	N
1768	chr1	155108166	155108167	rs12726330	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	1q22	GBA	rs12726330-?	NR	5E-8		1.71	[NR]	Illumina [2500000] (imputed)	N
1768	chr1	155111306	155111307	rs71628645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q22		rs71628645-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1768	chr1	155115259	155115260	rs4246529	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q22	DPM3	rs4246529-T	0.6363	2E-8	(AA)	0.0775	[0.05-0.105] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155118587	155118588	rs147847496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q22	HMGN2P18	rs147847496-T	NR	5E-10		0.0533516	[0.037-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1768	chr1	155118587	155118588	rs147847496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q22	HMGN2P18	rs147847496-T	NR	1E-9		0.0522597	[0.035-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1768	chr1	155118587	155118588	rs147847496	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q22	NR	rs147847496-C	NR	5E-11		1.165	[1.11-1.22]	Affymetrix, Illumina [29235255] (imputed)	N
1768	chr1	155123836	155123837	rs6676150	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1q22	DPM3	rs6676150-C	0.372	5E-11		0.356	[0.25-0.46] unit decrease	Affymetrix [NR] (imputed)	N
1768	chr1	155126902	155126903	rs140676308	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs140676308-T	0.0311064	8E-11		0.130478	[0.091-0.17] unit increase	Affymetrix [17914406] (imputed)	N
1768	chr1	155126947	155126948	rs10908458	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	1q22	DPM3, EFNA1, PKLR	rs10908458-T	0.58	2E-15		3.7	[3.10-4.20] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1768	chr1	155129561	155129562	rs12129003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs12129003-A	0.508013	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
1768	chr1	155130390	155130391	rs4971079	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs4971079-A	NR	2E-8		1.0401		Affymetrix [9869154] (imputed)	N
1768	chr1	155130390	155130391	rs4971079	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA		HMGN2P18	rs4971079-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
1768	chr1	155130797	155130798	rs4440846	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	1q22	KRTCAP2	rs4440846-T	0.16	4E-7		0.64	[0.39-0.89] unit increase	Illumina [5833901] (imputed)	N
1768	chr1	155131393	155131394	rs34257409	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1q22	DPM3, KRTCAP2	rs34257409-T	0.404	5E-12	(EA)	0.014	[0.01-0.018] unit increase	NR [12082474] (imputed)	N
1768	chr1	155131393	155131394	rs34257409	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1q22	KRTCAP2	rs34257409-T	0.4038	2E-15		0.0160895	[0.012-0.02] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1768	chr1	155131929	155131930	rs113625558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q22	NR	rs113625558-C	NR	3E-11		0.0505	[0.036-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155135035	155135036	rs35749011	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		GBA	rs35749011-A	0.0153	5E-11		2.24146	[1.76182-2.85169}	Illumina [1465938] (imputed)	N
1768	chr1	155135035	155135036	rs35749011	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls		KRTCAP2	rs35749011-A	0.0169	2E-70		0.6068	[0.54-0.67] unit increase	NR [7784415] (imputed)	N
1768	chr1	155135035	155135036	rs35749011	29263008	Guerreiro R	2018-01-01	Lancet Neurol	Investigating the genetic architecture of dementia with Lewy bodies: a two-stage genome-wide association study.	Dementia with Lewy bodies	1,216 European ancestry cases, 3,791 European ancestry controls	527 European ancestry cases, 663 European ancestry controls		GBA	rs35749011-G	0.014	7E-10		2.27	[1.75-2.95]	Illumina [8397716] (imputed)	N
1768	chr1	155135035	155135036	rs35749011	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls		GBA	rs35749011-A	0.012	3E-35		1.724138	[1.59-1.89]	Illumina [11933700] (imputed)	N
1768	chr1	155135035	155135036	rs35749011	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls		GBA, SYT11	rs35749011-A	0.017	1E-29		1.824	[1.72-1.93]	Illumina [7893274] (imputed)	N
1768	chr1	155135334	155135335	rs4460629	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q22	NA	rs4460629-T		5E-10		0.0113141	[0.0077-0.0149] unit decrease	Illumina [13288253] (imputed)	N
1768	chr1	155135334	155135335	rs4460629	29093028	Corre T	2017-11-01	J Am Soc Nephrol	Genome-Wide Meta-Analysis Unravels Interactions between Magnesium Homeostasis and Metabolic Phenotypes.	Serum magnesium levels	5,265 European ancestry individuals, 1,541 Val Borbera (founder/genetic isolate) individuals, 281 Carlantino (founder/genetic isolate) individuals,  889 Korcula (founder/genetic isolate) individuals	NA	1q22	MUC1	rs4460629-T	0.56	4E-14		0.136	[0.10-0.17] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1768	chr1	155137394	155137395	rs141942982	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q22	KRTCAP2	rs141942982-T	0.1066	8E-9		0.0233	[0.015-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1768	chr1	155137394	155137395	rs141942982	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q22	KRTCAP2	rs141942982-T	0.1066	1E-20		0.0362	[0.029-0.044] unit decrease	Affymetrix [19819130] (imputed)	N
1768	chr1	155137394	155137395	rs141942982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q22		rs141942982-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs75925257-A	NR	2E-19		0.0338	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs75925257-A	NR	3E-18		0.0327	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q22	NR	rs75925257-A	NR	6E-10		0.0233	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1q22	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs75925257-?		4E-14				NR [7428630] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q22	MACF1, KIAA0754, BMP8A, PABPC4	rs75925257-?		7E-16				NR [7428630] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1q22	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs75925257-?		9E-14				NR [7428630] (imputed)	N
1768	chr1	155138841	155138842	rs75925257	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q22	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs75925257-?		4E-14				NR [7428630] (imputed)	N
1768	chr1	155140647	155140648	rs11264339	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	1q22	KRTCAP2	rs11264339-T	0.48	6E-10		0.7	[0.48-0.92] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1768	chr1	155142882	155142883	rs4971088	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q22	NR	rs4971088-?	NR	1E-8	(white matter)			NR [9227495] (imputed)	N
1768	chr1	155142926	155142927	rs4971089	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q22	KRTCAP2	rs4971089-G	0.488	2E-8		0.023	[0.015-0.031] unit decrease	NR [NR] (imputed)	N
1768	chr1	155142926	155142927	rs4971089	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q22	KRTCAP2	rs4971089-G	0.488	2E-8		0.024	[0.016-0.032] unit decrease	NR [7647814] (imputed)	N
1768	chr1	155142926	155142927	rs4971089	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q22	KRTCAP2	rs4971089-A	0.4959	2E-25		0.664	[0.54-0.79] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1768	chr1	155143767	155143768	rs4971091	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	KRTCAP2	rs4971091-T	0.377971	6E-8	(females)	0.01292	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1768	chr1	155143767	155143768	rs4971091	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	KRTCAP2	rs4971091-T	0.377971	4E-11		0.01288	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1768	chr1	155143945	155143946	rs4971092	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Gastric cancer	6,563 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	1q22		rs4971092-T	NR	1E-8		0.6760802	[0.590822946283968-0.773640360594401]	Illumina [8919992] (imputed)	N
1768	chr1	155148519	155148520	rs80254867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs80254867-A	NR	2E-15		0.0537	[0.04-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155148780	155148781	rs4971059	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1q22		rs4971059-A	NR	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1768	chr1	155148780	155148781	rs4971059	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	TRIM46	rs4971059-A	0.35	5E-11	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q22		rs11264341-T	NR	2E-82		0.0352	[0.032-0.039] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	1E-70		0.0428	[0.038-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	8E-69		0.0422	[0.037-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	2E-15		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	1E-63		0.0405	[0.036-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	2E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	3E-24		0.0255	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	2E-22		0.0236	[0.019-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q22	NR	rs11264341-T	NR	4E-23		0.0239	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	1q22	TRIM46	rs11264341-C		4E-18		0.049	[0.037-0.061] mg/dl decrease	NR [NR] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	1q22	TRIM46	rs11264341-T	0.7513	8E-18	(Japanese)	0.04	[0.031-0.049] unit decrease	Illumina [5864938] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q22		rs11264341-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1768	chr1	155151492	155151493	rs11264341	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	1q22	TRIM46, PKLR	rs11264341-T	0.43	6E-19		0.05	[0.038-0.062] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1768	chr1	155153536	155153537	rs111508230	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q22	NR	rs111508230-T	0.110188	4E-9		0.0906689	[0.06-0.121] unit increase	Affymetrix [21375087] (imputed)	N
1768	chr1	155155607	155155608	rs4971099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1q22		rs4971099-G	NR	3E-11		0.0711	[0.05-0.092] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1768	chr1	155155607	155155608	rs4971099	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	1q22	KRTCAP2	rs4971099-A	0.55	7E-15		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1768	chr1	155155607	155155608	rs4971099	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	1q22	KRTCAP2	rs4971099-A	0.55	3E-13		0.04	[0.029-0.051] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q22	NR	rs4971100-A	0.43	1E-82		0.036	[0.032-0.04] unit decrease	NR [NR]	N
1768	chr1	155155730	155155731	rs4971100	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	1q22	TRIM46	rs4971100-A	0.42	2E-11		0.073	[0.051-0.095] unit increase	Illumina [7312348] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q22	TRIM46	rs4971100-A	0.4821	9E-17		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	1q22	TRIM46	rs4971100-A	0.7982	2E-7		0.0044	[0.0028-0.006] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	1q22	TRIM46	rs4971100-A	0.8153	8E-19	(Japanese)	0.0457	[0.036-0.056] unit decrease	Illumina [1986983] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	1q22	TRIM46	rs4971100-A	0.456	5E-16	(EA)	0.034285713	[0.026-0.043] unit decrease	Illumina [1986983] (imputed)	N
1768	chr1	155155730	155155731	rs4971100	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	1q22	MUC1	rs4971100-A	NR	4E-7	(EA)	0.02982	(0.01832-0.04132) mg/dl increase	Illumina [up to 509150]	N
1768	chr1	155155730	155155731	rs4971100	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	1q22	MUC1	rs4971100-A	NR	1E-7		0.0262	[NR] mg/dl increase	Illumina [up to 509150]	N
1768	chr1	155157714	155157715	rs2070803	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CA 15 3 plasma levels	400 French ancestry individuals	NA	1q22		rs2070803-A	NR	7E-43		0.564	[0.51-0.62] U/mL decrease	Illumina [5201092] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q22	TRIM46	rs2070803-A	0.4972	2E-60		0.0542	[0.048-0.061] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q22	TRIM46	rs2070803-A	0.5777	4E-41		0.052586	[0.045-0.06] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q22	NR	rs2070803-A	0.5402	2E-21	(men)	0.0513	[0.041-0.062] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q22	NR	rs2070803-A	0.5128	1E-22	(women)	0.0476	[0.038-0.057] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	1q22	MUC1	rs2070803-?	NR	4E-6	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1q22	TRIM46	rs2070803-A	NR	4E-17		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	1q22	TRIM46	rs2070803-G	NR	2E-6		1.032311	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
1768	chr1	155157714	155157715	rs2070803	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1q22	GBAP1	rs2070803-A	0.386	4E-9		0.292	[0.11-0.48] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1768	chr1	155161793	155161794	rs147048677	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	1q22	NR	rs147048677-C	0.94	9E-12		0.86	NR	NR [8546065] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	1q22	MUC1	rs4072037-T	0.828	7E-20	(Japanese)	0.048	[0.038-0.058] unit decrease	Illumina [5864938] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1q22	NR	rs4072037-T	0.8285	9E-10	(East Asian)	0.3172	[0.22-0.42] unit decrease	Illumina [6200000] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	1q22	MUC1	rs4072037-?	NR	9E-16		0.04491	[0.034-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	1q22	MUC1	rs4072037-T	0.84	6E-17		1.3513513	[1.27-1.45]	Affymetrix, Illumina [6223896] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	1q22	MUC1, MIR92B, THBS3, TRIM46, KRTC	rs4072037-T	0.54	9E-6		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	1q22	MUC1	rs4072037-T	0.54	3E-6		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Gastric cancer	2,350 East Asian ancestry cases, 2,708 East Asian ancestry controls	7,408  East Asian ancestry cases, 7,548  East Asian ancestry controls	1q22	MUC1	rs4072037-A	NR	7E-8		1.32	[1.19-1.45]	Illumina [556896]	N
1768	chr1	155162066	155162067	rs4072037	26058915	Tin A	2015-05-29	BMC Genet	Genetic loci for serum magnesium among African-Americans and gene-environment interaction at MUC1 and TRPM6 in European-Americans: the Atherosclerosis Risk in Communities (ARIC) study.	Magnesium levels	2,737 African American individuals	942 African American individuals	1q22	MUC1	rs4072037-C	0.32	9E-12		0.012	[NR] mmol/L decrease	Affymetrix [14825944] (imputed)	N
1768	chr1	155162066	155162067	rs4072037	20729852	Abnet CC	2010-08-22	Nat Genet	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	1q22	NR	rs4072037-A	0.84	4E-7	(Total gastric)	1.33	[1.19-1.49]	Illumina [551152]	N
1768	chr1	155162066	155162067	rs4072037	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	1q22	MUC1	rs4072037-C	0.46	2E-36		0.01	[0.008-0.012] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1768	chr1	155164479	155164480	rs12411216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q22		rs12411216-A	NR	4E-28		0.0254	[0.021-0.03] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1768	chr1	155164479	155164480	rs12411216	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	WU polyomavirus VP1 antibody levels	5,791 European ancestry individuals	NA	1q22		rs12411216-?	NR	3E-30				Affymetrix [NR] (imputed)	N
1768	chr1	155164479	155164480	rs12411216	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	1q22	MIR92B, THBS3	rs12411216-A	0.455	1E-7		0.487	[0.31-0.67] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1768	chr1	155164479	155164480	rs12411216	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q22		rs12411216-?	NR	2E-14		0.0154756	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1768	chr1	155167785	155167786	rs41264915	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 15.3 levels	7,107 Icelandic ancestry individuals	NA	1q22	THBS3	rs41264915-G	0.142	3E-63		0.38	[0.34-0.43] unit increase	Illumina [NR] (imputed)	N
1768	chr1	155167785	155167786	rs41264915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q22		rs41264915-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1768	chr1	155168929	155168930	rs7366775	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	1q22	NR	rs7366775-A	0.8	1E-34		1.41	NR	Affymetrix, Illumina [6957974] (imputed)	N
1768	chr1	155169200	155169201	rs11355526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q22		rs11355526-C	NR	3E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1768	chr1	155169200	155169201	rs11355526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q22		rs11355526-C	NR	4E-14		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1768	chr1	155169200	155169201	rs11355526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q22	THBS3, RP11-263K19.4	rs11355526-CA	0.549964	2E-15		0.0170523	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1768	chr1	155170391	155170392	rs199935580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	1q22		rs199935580-A	NR	4E-8		1.8207	[1.17-2.47] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1768	chr1	155174105	155174106	rs2075571	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	1q22		rs2075571-C	0.184	1E-6		0.84	[0.79-0.9]	Illumina [7199488] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q22		rs72704117-T	0.02	3E-28		11.02	z score increase	Affymetrix [9061022] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q22	NR	rs72704117-T	0.0228	1E-17				NR [9056863] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q22	NR	rs72704117-T	NR	1E-11		0.0543	[0.039-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q22	NR	rs72704117-T	NR	1E-11		0.0542	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q22	NR	rs72704117-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1768	chr1	155175088	155175089	rs72704117	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 15.3 levels	7,107 Icelandic ancestry individuals	NA	1q22	THBS3	rs72704117-T	0.03	1E-14		0.38	[0.48-0.28] unit decrease	Illumina [NR] (imputed)	N
1768	chr1	155175389	155175390	rs370545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs370545-G	0.592897	1E-13				Affymetrix, Illumina [21126107] (imputed)	N
1768	chr1	155175389	155175390	rs370545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q22	NR	rs370545-G	0.531479	2E-15		0.015942	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1768	chr1	155175891	155175892	rs914615	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	1q22	THBS3	rs914615-A	0.476	4E-9		0.068	[0.044-0.092] mmol/L increase	Illumina [1990000] (imputed)	N
1768	chr1	155175891	155175892	rs914615	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q22	THBS3	rs914615-A	0.466093	6E-12		0.0126003	[0.009-0.0162] unit increase	NR [13737936] (imputed)	N
1768	chr1	155175891	155175892	rs914615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q22		rs914615-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1768	chr1	155175891	155175892	rs914615	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	1q22	THBS3	rs914615-A	0.47	7E-6		0.03	[0.016-0.044] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1q22		rs760077-T	0.851495	2E-11		0.0268156	[0.019-0.035] unit decrease	Illumina [13478778] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q22		rs760077-T	NR	6E-38		0.0242	[0.02-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	1q22		rs760077-T	0.851951327	4E-16		0.09394713	[0.071-0.117] unit decrease	Illumina [13134967] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	1q22		rs760077-T	0.851107	4E-8		0.0265075	[0.017-0.036] unit decrease	Illumina [13477767] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q22		rs760077-T	NR	8E-41		0.0236	[0.02-0.027] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q22		rs760077-T	NR	2E-53		0.0278	[0.024-0.031] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	1q22		rs760077-T	0.850185688	2E-40		0.32622555	[0.28-0.37] unit increase	Illumina [13428249] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	1q22		rs760077-T	NR	8E-39		0.2809	[0.24-0.32] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q22		rs760077-T	NR	6E-126		0.0502	[0.046-0.054] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1768	chr1	155178781	155178782	rs760077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	1q22		rs760077-T	0.851702	4E-25		0.0491	[0.04-0.058] unit decrease	Illumina [13478792] (imputed)	N
1768	chr1	155178781	155178782	rs760077	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q22	NR	rs760077-T	0.6011	2E-26		0.002513	[0.0021-0.003] unit decrease	Affymetrix [NR] (imputed)	N
1768	chr1	155178781	155178782	rs760077	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	1q22	MTX1	rs760077-A	0.4	2E-13		1.16	[1.11-1.20]	Affymetrix [710030]	N
1768	chr1	155178781	155178782	rs760077	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	1q22		rs760077-A	0.39	2E-12		0.0684	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q22	MTX1	rs760077-T	0.602219	2E-34		0.027532477	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q22	MTX1	rs760077-T	0.602237	9E-44		0.031364206	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q22	MTX1	rs760077-T	0.602214	4E-56		0.035672992	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs760077-T	0.654465	3E-50				Affymetrix, Illumina [24332387] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q22	NR	rs760077-T	0.601474	2E-49		0.028134	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs760077-T	0.652933	6E-59				Affymetrix, Illumina [24653286] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q22	NR	rs760077-T	0.601508	5E-59		0.030901	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs760077-T	0.651398	1E-82				Affymetrix, Illumina [24558453] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q22	NR	rs760077-T	0.601474	8E-82		0.036525	[0.033-0.04] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Gastric cancer	6,563 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	1q22		rs760077-T	0.847348519	2E-36		1.3920238	[1.322222625-1.465509734]	Illumina [8919992] (imputed)	N
1768	chr1	155178781	155178782	rs760077	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q22	MTX1	rs760077-A		3E-36		0.028	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1768	chr1	155178781	155178782	rs760077	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 15.3 levels	7,107 Icelandic ancestry individuals	NA	1q22	MTX1	rs760077-A	0.354	1E-300		0.86	[0.81-0.90] unit increase	Illumina [NR] (imputed)	N
1768	chr1	155178781	155178782	rs760077	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q22	MTX1	rs760077-A	0.1676	4E-16	(East Asian)	0.063	[0.048-0.078] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1768	chr1	155178781	155178782	rs760077	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q22	MTX1	rs760077-A	0.366	7E-11		0.0019	[0.0013-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
1768	chr1	155178781	155178782	rs760077	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	1q22	MUC1	rs760077-T	0.85	2E-12		1.38	[1.26-1.51]	Affymetrix, Illumina [6192596] (imputed)	N
1768	chr1	155178781	155178782	rs760077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1q22	MTX1	rs760077-A	0.3457	2E-67		0.0138	[0.012-0.015] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1768	chr1	155178781	155178782	rs760077	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q22	MTX1	rs760077-A	0.403	8E-13		0.0086	[0.0062-0.011] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1768	chr1	155178781	155178782	rs760077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q22		rs760077-?	NR	4E-43				NR [~ 8900000] (imputed)	N
1768	chr1	155178781	155178782	rs760077	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urea levels	19,293 British ancestry individuals from 6863 families.	NA	1q22	MTX1	rs760077-T	0.4247	6E-9		0.0638853	[0.042-0.085] mg/dl decrease	Illumina [24111857] (imputed)	N
1768	chr1	155178781	155178782	rs760077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q22	MTX1	rs760077-T	0.6031	2E-11		0.02424584	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1768	chr1	155178781	155178782	rs760077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q22	MTX1	rs760077-T	0.6031	6E-19		0.03218822	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1768	chr1	155178781	155178782	rs760077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1q22	MTX1	rs760077-T	0.6031	2E-23		0.03587192	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1768	chr1	155181842	155181843	rs2974935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	1q22		rs2974935-T	0.819393	6E-22		0.04427	[0.035-0.053] unit decrease	Illumina [13475706] (imputed)	N
1768	chr1	155181842	155181843	rs2974935	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	1q22	MTX1	rs2974935-T	NR	2E-7		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
1768	chr1	155182163	155182164	rs2075570	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	1q22	MTX1	rs2075570-T	NR	5E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1768	chr1	155184056	155184057	rs394757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1q22		rs394757-A	NR	3E-9		0.0636	[0.043-0.085] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1768	chr1	155184974	155184975	rs2990223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1q22		rs2990223-G	0.842876718	8E-11		0.07520594	[0.053-0.098] unit decrease	Illumina [13134967] (imputed)	N
1768	chr1	155184974	155184975	rs2990223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	1q22		rs2990223-G	NR	9E-21		0.1672	[0.13-0.2] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
1768	chr1	155184974	155184975	rs2990223	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1q22		rs2990223-A	NR	4E-9		0.12	[0.081-0.159] unit decrease	Illumina [110396782]	N
1768	chr1	155184974	155184975	rs2990223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q22	NR	rs2990223-A	0.39888	7E-21		0.018244	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1768	chr1	155184974	155184975	rs2990223	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q22	MTX1, MUC1	rs2990223-G	0.7053	5E-10		6.211	NR z score increase	Illumina [26237160] (imputed)	N
1768	chr1	155186741	155186742	rs1057941	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	1q22	NR	rs1057941-A	NR	2E-33		1.3315579		Illumina [6573681] (imputed)	N
1768	chr1	155186741	155186742	rs1057941	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	1q22	GBAP1	rs1057941-A	NR	2E-7		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
1769	chr1	155190253	155190254	rs2990220	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1q22	NR	rs2990220-A	0.8283	3E-11	(East Asian)	0.5511	[0.39-0.71] unit decrease	Illumina [6200000] (imputed)	N
1769	chr1	155190253	155190254	rs2990220	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1q22	NR	rs2990220-A	0.8282	2E-12	(East Asian)	0.41	[0.3-0.52] unit decrease	Illumina [6200000] (imputed)	N
1769	chr1	155190253	155190254	rs2990220	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	1q22	NR	rs2990220-A	0.8169	1E-9	(East Asian)	0.3166	[0.21-0.42] unit decrease	Illumina [6200000] (imputed)	N
1769	chr1	155194014	155194015	rs78973538	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q22	GBAP1	rs78973538-?	NR	3E-8	(subset analysis)			Illumina [130052]	N
1769	chr1	155194979	155194980	rs2049805	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	1q22	MTX1, GBA	rs2049805-T	0.17	2E-12		0.0072	[0.0052-0.0092] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1769	chr1	155197267	155197268	rs2974929	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	1q22	GBAP1	rs2974929-?	NR	4E-21		0.05212	[0.041-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1769	chr1	155197461	155197462	rs2990245	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q22	NR	rs2990245-?	NR	1E-8	(white matter)			NR [9227495] (imputed)	N
1769	chr1	155197601	155197602	rs2990246	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	1q22	GBAP1	rs2990246-?	NR	8E-11		0.03708	[0.026-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1769	chr1	155197601	155197602	rs2990246	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	1q22	GBAP1	rs2990246-?	NR	1E-12		0.03958	[0.029-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1769	chr1	155204792	155204793	rs75822236	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	1q22	GBA	rs75822236-T	0.01	1E-19		161.4	[53.86-483.6]	Affymetrix [508192]	N
1769	chr1	155205633	155205634	rs76763715	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q22	GBAP1	rs76763715-T	0.9953	2E-22		0.7467	[0.6-0.9] unit decrease	NR [7784415] (imputed)	N
1769	chr1	155206166	155206167	rs2230288	33589841	Chia R	2021-02-15	Nat Genet	Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.	Dementia with Lewy bodies	2,591 European ancestry cases, 4,027 European ancestry controls	970 European ancestry cases, 8,928 European ancestry controls	1q22		rs2230288-T	0.013	5E-16		2.01	[1.46-2.78]	NR [20137051]	N
1769	chr1	155206166	155206167	rs2230288	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	1q22	GBA	rs2230288-?	NR	5E-17		1.674	[1.495-1.873]	Illumina [12438219] (imputed)	N
1769	chr1	155207029	155207030	rs72704130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q22	GBA	rs72704130-A	NR	3E-8		0.0463744	[0.03-0.063] unit decrease	Affymetrix [321114] (imputed)	N
1769	chr1	155211105	155211106	rs188978150	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GBA	rs188978150-?	NR	3E-9	(female)	0.48218	[NR] unit increase	Affymetrix [NR] (imputed)	N
1769	chr1	155216420	155216421	rs56124445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs56124445-A	NR	3E-10		0.0455	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1769	chr1	155218364	155218365	rs734073	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q22	FAM189B	rs734073-T	0.755	2E-15		0.017859396	[0.013-0.022] unit decrease	Illumina [9339358] (imputed)	N
1769	chr1	155230705	155230706	rs60762712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q22	SCAMP3	rs60762712-G	0.254576	5E-17		0.021356285	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155240076	155240077	rs11577338	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs11577338-A	0.8607	8E-17		0.184	[0.14-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1769	chr1	155240076	155240077	rs11577338	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q22		rs11577338-A	0.4612	1E-8		0.0559	[0.036-0.075] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1769	chr1	155240076	155240077	rs11577338	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs11577338-A	0.8519	4E-139		0.3787	[0.35-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1769	chr1	155256230	155256231	rs12724449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q22		rs12724449-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1769	chr1	155260381	155260382	rs61755431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q22	PKLR	rs61755431-T	0.00239400000000001	1E-11		0.15302336	[0.11-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155260381	155260382	rs61755431	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Hemoglobin levels	24,814 European ancestry individuals	6,526 European ancestry individuals	1q22	PKLR	rs61755431-T	0.0025	1E-6		0.43	[0.26-0.6] unit decrease	Illumina [183585]	N
1769	chr1	155261635	155261636	rs113403872	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	1q22		rs113403872-?	NR	2E-10		0.198745	[0.14-0.26] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155261635	155261636	rs113403872	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	1q22		rs113403872-?	NR	2E-14		0.250661	[0.19-0.31] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155261635	155261636	rs113403872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q22	PKLR	rs113403872-T	0.00111300000000003	2E-9		0.1967921	[0.13-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261635	155261636	rs113403872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q22	PKLR	rs113403872-T	0.00111099999999997	2E-12		0.23211858	[0.17-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261635	155261636	rs113403872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q22	PKLR	rs113403872-T	0.00111099999999997	2E-11		0.22108601	[0.16-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	1q22		rs116100695-G	0.997329	9E-32		0.470866	[0.39-0.55] unit increase	NR [11722792] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	1q22		rs116100695-?	NR	2E-59		0.307725	[0.27-0.35] unit increase	NR [9800000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	1q22		rs116100695-?	NR	1E-11		0.132791	[0.094-0.171] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	1q22		rs116100695-?	NR	1E-15		0.154092	[0.11-0.19] unit increase	NR [9800000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	1q22		rs116100695-?	NR	2E-57		0.299595	[0.26-0.34] unit increase	NR [9800000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	1q22		rs116100695-?	NR	9E-16		0.163325	[0.12-0.2] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.00277799999999995	2E-64		0.35764667	[0.32-0.4] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.00277899999999998	1E-52		0.3220496	[0.28-0.36] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.00277799999999995	4E-11		0.13799712	[0.097-0.179] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.002776	4E-16		0.17272776	[0.13-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.002776	2E-58		0.33888182	[0.3-0.38] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.002776	8E-51		0.31545633	[0.27-0.36] unit increase	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.00277899999999998	1E-19		0.18999453	[0.15-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q22	PKLR	rs116100695-A	0.00278	4E-18		0.18222706	[0.14-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q22	PKLR	rs116100695-A	0.0026	2E-14		0.3161205	[0.24-0.4] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q22	PKLR	rs116100695-A	0.0026	2E-11		0.2753483	[0.19-0.36] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q22	PKLR	rs116100695-A	0.0026	4E-11		0.2725777	[0.19-0.35] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155261708	155261709	rs116100695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q22	PKLR	rs116100695-A	0.0026	1E-9		0.249151	[0.17-0.33] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155264119	155264120	rs1227427396	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	1q22		rs1227427396-?	NR	5E-13		1.34508	[0.98-1.71] unit increase	NR [9800000] (imputed)	N
1769	chr1	155264119	155264120	rs1227427396	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	1q22		rs1227427396-?	NR	6E-9		1.12238	[0.74-1.5] unit increase	NR [9800000] (imputed)	N
1769	chr1	155264119	155264120	rs1227427396	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	1q22		rs1227427396-?	NR	2E-9		1.04917	[0.7-1.4] unit increase	NR [9800000] (imputed)	N
1769	chr1	155266608	155266609	rs115736167	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	1q22	PKLR	rs115736167-C	0.02	2E-7	(males)	0.46	[0.28-0.64] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs180921974-G	0.022711	1E-10		0.146958	[0.1-0.19] unit increase	Affymetrix [17914406] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	8E-35		0.09719	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	6E-21	(females)	0.103	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	1E-15	(males)	0.08991	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	7E-17	(females)	0.09508	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	3E-13	(males)	0.08321	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155268130	155268131	rs180921974	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q22	ADAM15, ARHGEF2, ASH1L, C1orf2, C1orf104, CKS1B, CLK2, DAP3, DCST1, DCST2, DPM3, EFNA1, EFNA3, EFNA4, FDPS, FLAD1, GBA, GON4L, HCN3, KIAA0907, KRTCAP2, LENEP, MAPBPIP, MSTO1, MTX1, MUC1, PBXIP1, PKLR, PMVK, PYGO2, RAG1AP1, RIT1, RUSC1, RXFP4, SCAMP3, SHC1, SSR2, SYT11, THBS3, TRIM46, UBQLN4, YY1AP1, ZBTB7B	rs180921974-G	0.0216599	1E-28		0.09008	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1769	chr1	155269775	155269776	rs3020781	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q22	NR	rs3020781-G	0.2695	1E-10		0.0333	[0.023-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1769	chr1	155269775	155269776	rs3020781	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q22	NR	rs3020781-G	0.3719	7E-12		0.0294	[0.021-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1769	chr1	155271094	155271095	rs150077703	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	1q22		rs150077703-?	NR	2E-12		0.424452	[0.29-0.56] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155271094	155271095	rs150077703	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	1q22		rs150077703-?	NR	2E-9		0.361207	[0.23-0.49] unit decrease	NR [9800000] (imputed)	N
1769	chr1	155271433	155271434	rs141119689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q22	PKLR	rs141119689-T	0.069	1E-23		0.07211229	[0.058-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155271433	155271434	rs141119689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q22	PKLR	rs141119689-T	0.069	1E-20		0.06696237	[0.053-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155271433	155271434	rs141119689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q22	PKLR	rs141119689-T	0.069	3E-14		0.05444318	[0.04-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155271433	155271434	rs141119689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q22	PKLR	rs141119689-T	0.069	8E-13		0.05145992	[0.037-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
1769	chr1	155272273	155272274	rs7524950	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs7524950-T	0.2587	3E-9	(EA)	0.0419	[0.028-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
1769	chr1	155273868	155273869	rs4971072	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q22	NR	rs4971072-G	0.8641	9E-19		0.0354	[0.028-0.043] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1769	chr1	155275552	155275553	rs7534795	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1q22	FDPS	rs7534795-T	0.2575	2E-9		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1769	chr1	155278019	155278019	rs566233160	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	1q22		rs566233160-A,rs566233160-A	0.873801	5E-22		0.0612734	[0.049-0.074] unit increase	NR [11722792] (imputed)	N
1769	chr1	155278019	155278019	rs566233160	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	1q22		rs566233160-A,rs566233160-A	0.873801	5E-22		0.0612734	[0.049-0.074] unit increase	NR [11722792] (imputed)	N
1769	chr1	155284585	155284586	rs11264360	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q22	NR	rs11264360-A	0.24292	3E-15		0.018008	[0.014-0.022] unit increase	Affymetrix [16668957] (imputed)	N
1769	chr1	155289544	155289545	rs11264361	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q22		rs11264361-?	NR	8E-14		0.0174875	[0.013-0.022] unit increase	NR [6912294] (imputed)	N
1769	chr1	155303096	155303097	rs151026328	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs151026328-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1769	chr1	155303106	155303107	rs140959946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q22	NR	rs140959946-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1770	chr1	155321213	155321214	rs114760481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q22	ASH1L	rs114760481-T	NR	7E-10		0.0583756	[0.04-0.077] unit decrease	Affymetrix [319769] (imputed)	N
1770	chr1	155321213	155321214	rs114760481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q22	ASH1L	rs114760481-T	NR	2E-10		0.0603482	[0.042-0.079] unit decrease	Affymetrix [319769] (imputed)	N
1770	chr1	155371118	155371119	rs145330152	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		ASH1L	rs145330152-C	0.01357	1E-9		2.22123	[1.71904-2.87012}	Illumina [1465938] (imputed)	N
1770	chr1	155388850	155388851	rs12734374	31065058	Rongve A	2019-05-07	Sci Rep	GBA and APOE ?4 associate with sporadic dementia with Lewy bodies in European genome wide association study.	Dementia with Lewy bodies	720 European ancestry cases, 6,490 European ancestry controls	108 European ancestry cases, 75,545 European ancestry controls	1q22	ASH1L, GBA	rs12734374-?	NR	1E-9		4.31	[NR]	Illumina [6963063] (imputed)	N
1770	chr1	155388850	155388851	rs12734374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q22		rs12734374-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1770	chr1	155389687	155389688	rs10908465	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q22		rs10908465-C	0.732668	5E-14		0.017	[0.013-0.021] unit increase	NR [7250403] (imputed)	N
1770	chr1	155399291	155399292	rs7514174	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q22	Intergenic	rs7514174-C	0.9506	4E-8		0.0247	[0.016-0.034] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1770	chr1	155416327	155416328	rs10796944	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs10796944-A	0.2299	7E-10	(EA)	0.0457	[0.031-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
1770	chr1	155435095	155435096	rs553470220	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs553470220-C	0.0288761	8E-11		0.131235	[0.092-0.171] unit increase	Affymetrix [17914406] (imputed)	N
1770	chr1	155448414	155448415	rs13373934	27601451	Sanders AE	2016-09-06	J Dent Res	Chronic Periodontitis Genome-wide Association Study in the Hispanic Community Health Study / Study of Latinos.	Chronic periodontitis (mean interproximal clinical attachment level)	10,935 Hispanic individuals	4,402 European ancestry individuals, 908 African American individuals	1q22	ASH1L	rs13373934-G	0.005	5E-7		0.173	[NR] unit increase	Illumina [~ 20000000] (imputed)	N
1771	chr1	155459154	155459155	rs61812092	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs61812092-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1771	chr1	155477569	155477570	rs11582072	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q22		rs11582072-T	0.5263	5E-7		0.0579	[0.035-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1771	chr1	155477569	155477570	rs11582072	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs11582072-T	0.1366	5E-78		0.4188	[0.37-0.46] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1771	chr1	155483785	155483786	rs116698232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs116698232-G	NR	1E-9		0.0516	[0.035-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1771	chr1	155484429	155484430	rs77350683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q22	ASH1L	rs77350683-C	0.067755	5E-50		0.066349365	[0.058-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1771	chr1	155484429	155484430	rs77350683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q22	ASH1L	rs77350683-C	0.067753	4E-42		0.06069842	[0.052-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1771	chr1	155484429	155484430	rs77350683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q22	ASH1L	rs77350683-C	0.067765	2E-40		0.05924353	[0.051-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1771	chr1	155484429	155484430	rs77350683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q22	ASH1L	rs77350683-C	0.067764	3E-36		0.056011878	[0.047-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1771	chr1	155484855	155484856	rs115904883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs115904883-A	NR	1E-14		0.0393	[0.029-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1771	chr1	155484855	155484856	rs115904883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs115904883-A	NR	5E-9		0.0299	[0.02-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1771	chr1	155485026	155485027	rs80142782	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	1q22	ASH1L	rs80142782-T	0.93	2E-19		1.6129031	[1.45-1.79]	Affymetrix, Illumina [6223896] (imputed)	N
1771	chr1	155538488	155538489	rs139932136	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs139932136-C	0.0287098	1E-10		0.130274	[0.091-0.17] unit increase	Affymetrix [17914406] (imputed)	N
1771	chr1	155549561	155549562	rs12407219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs12407219-G	NR	7E-14		0.049	[0.036-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1771	chr1	155556970	155556971	rs12091730	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs12091730-A	0.2322	2E-10	(EA)	0.0464	[0.032-0.061] unit increase	Illumina [~ 11800000] (imputed)	N
1771	chr1	155578041	155578042	rs35202981	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1q22	MSTO1	rs35202981-G	0.139	1E-8	(EA)	0.017	[0.011-0.023] unit increase	NR [12082474] (imputed)	N
1772	chr1	155584193	155584194	rs564968560	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 15.3 levels	7,107 Icelandic ancestry individuals	NA	1q22	MSTO1	rs564968560-A	0.02	1E-11		0.37	[0.48-0.27] unit decrease	Illumina [NR] (imputed)	N
1772	chr1	155607474	155607475	rs61812150	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q22	AL353807.3	rs61812150-A	0.0278	9E-18		0.0513	[0.04-0.063] unit increase	Affymetrix [18391927] (imputed)	N
1772	chr1	155612196	155612197	rs34632540	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q22		rs34632540-T	0.4724	9E-7		0.0565	[0.034-0.079] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1772	chr1	155612196	155612197	rs34632540	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs34632540-T	0.8597	3E-76		0.4125	[0.37-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1772	chr1	155626653	155626654	rs530989855	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AL353807.3	rs530989855-?	NR	2E-8	(female)	0.592067	[NR] unit increase	Affymetrix [NR] (imputed)	N
1772	chr1	155640114	155640115	rs41264945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs41264945-T	NR	2E-10		0.0338	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1772	chr1	155640114	155640115	rs41264945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs41264945-T	NR	3E-12		0.0369	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1772	chr1	155640114	155640115	rs41264945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1q22	NR	rs41264945-T	0.054823999999999984	2E-8		0.0244992	[0.016-0.033] unit increase	Affymetrix [16583148] (imputed)	N
1772	chr1	155640114	155640115	rs41264945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q22		rs41264945-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1772	chr1	155661718	155661719	rs146554560	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs146554560-T	0.0224179	4E-10		0.143416	[0.098-0.188] unit increase	Affymetrix [17914406] (imputed)	N
1772	chr1	155666960	155666961	rs348196	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs348196-C	0.2375	2E-8	(EA)	0.0407	[0.027-0.055] unit increase	Illumina [~ 11800000] (imputed)	N
1772	chr1	155682869	155682870	rs490608	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q22	NR	rs490608-?	NR	1E-6	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1772	chr1	155690185	155690186	rs184104770	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q22	NR	rs184104770-A	NR	4E-8		1.172	[1.11-1.24]	Affymetrix, Illumina [29235255] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q22	NR	rs12134456-G	0.387748	7E-12		0.014524	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q22	NR	rs12134456-?	NR	3E-8	(white matter)			NR [9227495] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q22	GON4L	rs12134456-C	0.6346	6E-20		0.0438	[0.034-0.053] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q22	NR	rs12134456-C	0.3866	7E-7	(women)	0.0338	[0.02-0.047] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	1q22	NR	rs12134456-C	0.3748	8E-8	(men)	0.0426	[0.027-0.058] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1773	chr1	155722505	155722506	rs12134456	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1q22	GON4L	rs12134456-C	0.6221	2E-22		0.0106	[0.0084-0.0128] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1773	chr1	155749869	155749870	rs2985707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1q22		rs2985707-A	0.23149	2E-8		0.0182424	[0.012-0.025] unit increase	Illumina [13479924] (imputed)	N
1773	chr1	155749869	155749870	rs2985707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	1q22		rs2985707-A	0.231228	5E-11		0.0250425	[0.018-0.032] unit increase	Illumina [13479178] (imputed)	N
1773	chr1	155767707	155767708	rs860295	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q22	GON4L	rs860295-G	0.267	9E-11	(Japanese)	0.029	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
1773	chr1	155773336	155773337	rs72706163	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q22	GON4L	rs72706163-T	0.8945	6E-6		0.0492	[0.028-0.07] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1773	chr1	155779030	155779031	rs71628688	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYT11	5,365 Icelandic ancestry individuals	NA	1q22		rs71628688-T	0.1146	5E-47		0.429233	[0.37-0.49] unit decrease	Illumina [7506463] (imputed)	N
1773	chr1	155797491	155797492	rs72706172	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	1q22	NR	rs72706172-A	0.82	1E-15		1.29	NR	Affymetrix, Illumina [6957974] (imputed)	N
1773	chr1	155803204	155803205	rs140893634	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs140893634-T	0.0273475	5E-9		0.121344	[0.081-0.162] unit increase	Affymetrix [17914406] (imputed)	N
1773	chr1	155816084	155816085	rs145976521	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q22	SYT11	rs145976521-G	0.90140625	5E-26	(SYT11, 7089_42_3)	0.4389574	[0.36-0.52] unit increase	Illumina [> 1000000] (imputed)	N
1773	chr1	155819017	155819018	rs113544820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q22	Intergenic	rs113544820-A	0.0464	5E-10	(MTAG)	0.0265	[0.018-0.035] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1773	chr1	155819017	155819018	rs113544820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q22	Intergenic	rs113544820-A	0.0465	2E-8	(MTAG)	0.0223	[0.014-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1773	chr1	155819656	155819657	rs4971104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs4971104-T	NR	6E-12		0.0459	[0.033-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1773	chr1	155825392	155825393	rs822493	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 15.3 levels	7,107 Icelandic ancestry individuals	NA	1q22	SYT11	rs822493-T	0.033	3E-8		0.25	[0.16-0.33] unit increase	Illumina [NR] (imputed)	N
1773	chr1	155827545	155827546	rs7556519	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	1q22	GON4L	rs7556519-C	0.290093	5E-6		0.360465	[0.21-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1774	chr1	155852603	155852604	rs17379666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs17379666-T	NR	4E-9		0.0485	[0.032-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1774	chr1	155852603	155852604	rs17379666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs17379666-T	NR	1E-9		0.0504	[0.034-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1774	chr1	155860090	155860091	rs1749405	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q22	SYT11, RIT1	rs1749405-A	0.65	1E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1774	chr1	155867257	155867259	rs66756214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q22	RNU4-19P, RIT1	rs66756214-C	0.663198	1E-11		0.016143626	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1774	chr1	155868624	155868625	rs2282301	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	1q22	RIT1	rs2282301-A	0.23	7E-6	(maternal warmth)	2.88	[NR] unit increase	Perlegen [429901]	N
1774	chr1	155876612	155876613	rs3856261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q22		rs3856261-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1774	chr1	155876612	155876613	rs3856261	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q22	NR	rs3856261-G	NR	3E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q22	RIT1	rs12144175-T	0.2513	4E-6				Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	1q22	RIT1	rs12144175-T	0.2513	5E-7				Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q22	RIT1	rs12144175-T	0.2513	3E-6		0.0312	[0.018-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	1q22	RIT1	rs12144175-T	0.2513	3E-7		0.034	[0.021-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	1q22	RIT1	rs12144175-T	0.2513	7E-7		0.0323	[0.02-0.045] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878105	155878106	rs12144175	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	1q22	RIT1	rs12144175-T	0.2513	7E-6		0.0295	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1774	chr1	155878731	155878732	rs670523	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q22	RIT1, LMNA	rs670523-G	0.669239	8E-12		0.018781	[0.013-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1774	chr1	155878731	155878732	rs670523	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q22	NR	rs670523-A	0.329	6E-9	(EA)	1.0770509	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1774	chr1	155878731	155878732	rs670523	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q22	RIT1, MSTO1, UBQLN4	rs670523-A	0.324	6E-11		1.06	[1.028-1.092]	Affymetrix, Illumina [1230000] (imputed)	N
1774	chr1	155888762	155888762	rs768651403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q22	NR	rs768651403-GT	0.758596	3E-14		0.00973552	[0.007-0.0125] unit increase	Affymetrix [16582621] (imputed)	N
1774	chr1	155888762	155888762	rs768651403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q22	NR	rs768651403-GT	0.758596	8E-9		0.00783484	[0.0049-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
1774	chr1	155898759	155898759	rs11406084	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs11406084-CA	0.1995	7E-6	(EA)	0.0378	[0.021-0.054] unit increase	Illumina [~ 11800000] (imputed)	N
1774	chr1	155907822	155907823	rs11264422	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q22	NR	rs11264422-?	NR	8E-35		0.03348503	[0.028-0.039] unit increase	Illumina [30613845] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q22	RXFP4	rs140953793-G	NR	2E-9		0.0637539	[0.043-0.085] unit decrease	Affymetrix [321114] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q22	RXFP4	rs140953793-G	NR	5E-8		0.0626075	[0.04-0.085] unit decrease	Affymetrix [321114] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q22	RXFP4	rs140953793-G	NR	1E-8		0.0607366	[0.04-0.082] unit decrease	Affymetrix [321169] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs140953793-G	0.0194877	9E-9		0.14611	[0.096-0.196] unit increase	Affymetrix [17914406] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q22	NR	rs140953793-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1774	chr1	155908656	155908657	rs140953793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q22	NR	rs140953793-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1774	chr1	155927751	155927752	rs2364403	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	1q22	ARHGEF2	rs2364403-A	0.2	1E-6	(Meta)			Illumina [254145]	N
1774	chr1	155946398	155946399	rs7534858	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	1q22	ARHGEF2	rs7534858-A	0.265244	6E-6		0.372574	[0.21-0.53] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1774	chr1	155950962	155950963	rs35588936	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q22	ARHGEF2	rs35588936-C	0.935497	3E-10		0.0180806	[0.012-0.024] unit increase	Affymetrix [12370749]	N
1774	chr1	155954083	155954084	rs78716403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs78716403-G	NR	3E-9		0.0312	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1774	chr1	155954083	155954084	rs78716403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs78716403-G	NR	4E-10		0.0331	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1774	chr1	155962067	155962067	rs35770803	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 9)	18,096 European individuals		1q22	NR	rs35770803-GT	0.62575	4E-6		0.051032	[0.029-0.073] unit decrease	Affymetrix [14134301] (imputed)	N
1774	chr1	155962067	155962067	rs35770803	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		1q22	NR	rs35770803-GT	0.62575	2E-7		0.057913	[0.036-0.08] unit decrease	Affymetrix [14134301] (imputed)	N
1774	chr1	155962067	155962067	rs35770803	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		1q22	NR	rs35770803-GT	0.62575	3E-6		0.051686	[0.03-0.073] unit decrease	Affymetrix [14134301] (imputed)	N
1774	chr1	155962067	155962067	rs35770803	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		1q22	NR	rs35770803-GT	0.62575	9E-6		0.049188	[0.028-0.071] unit decrease	Affymetrix [14134301] (imputed)	N
1774	chr1	155969427	155969428	rs4330912	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals	9,799 European ancestry individuals	1q22	ZBTB7B	rs4330912-G	0.64	2E-7	(Conditioned on rs3753639)	0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1775	chr1	155985898	155985899	rs72708239	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q22	NR	rs72708239-A	0.73887	2E-10		0.00963222	[0.0068-0.0125] unit increase	Affymetrix [16578495] (imputed)	N
1775	chr1	155997172	155997173	rs2364400	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q22	UBQLN4	rs2364400-T	0.376	7E-9		0.0071	[0.0047-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1775	chr1	155999570	155999571	rs4661096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	9,368 Hispanic or Latin American individuals	NA	1q22	NR	rs4661096-A	0.054895	2E-10		0.219255	[0.15-0.29] SD units decrease	Affymetrix, Illumina [26925380] (imputed)	N
1775	chr1	155999576	155999578	rs56094355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q22		rs56094355-A	0.0707	2E-11		0.1543	[0.11-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1775	chr1	155999576	155999578	rs56094355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs56094355-A	0.3171	2E-15		0.1395	[0.11-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1775	chr1	156009126	156009127	rs76830943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	1q22		rs76830943-C	0.751304	5E-10		0.0224689	[0.015-0.03] unit increase	Illumina [13478948] (imputed)	N
1775	chr1	156009126	156009127	rs76830943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	1q22		rs76830943-C	0.750686	3E-10		0.0231149	[0.016-0.03] unit increase	Illumina [13478961] (imputed)	N
1775	chr1	156009126	156009127	rs76830943	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q22	NR	rs76830943-T	0.832755	3E-10		0.0242358	[0.017-0.032] unit increase	Affymetrix [16580851] (imputed)	N
1775	chr1	156011443	156011444	rs2297792	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1q22	UBQLN4	rs2297792-C	0.606	2E-13		0.0133	[0.0098-0.0168] unit increase	Illumina [246328]	N
1775	chr1	156019074	156019075	rs61813293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q22	NR	rs61813293-T	NR	2E-11		0.023	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1775	chr1	156019074	156019075	rs61813293	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1q22	NR	rs61813293-T	0.1434	2E-11		0.023662033	[0.017-0.031] unit increase	Affymetrix [10549349] (imputed)	N
1775	chr1	156030036	156030037	rs34372695	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1q22	RAB25	rs34372695-T		4E-12		0.3189	[0.23-0.41] unit increase	Illumina [NR]	N
1775	chr1	156030036	156030037	rs34372695	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	1q22	SYT11	rs34372695-T	0.03	4E-12		1.47	[1.35-1.59]	Illumina [7689524] (imputed)	N
1775	chr1	156038057	156038058	rs61748951	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q22	RAB25	rs61748951-C	0.975927	2E-8		0.0359832	[0.023-0.049] unit increase	Affymetrix [NR] (imputed)	N
1775	chr1	156038057	156038058	rs61748951	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q22	RAB25	rs61748951-C	0.975914	2E-8		0.0368176	[0.024-0.05] unit increase	Affymetrix [NR] (imputed)	N
1775	chr1	156038057	156038058	rs61748951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q22		rs61748951-A	0.0239	1E-8		0.0273	[0.018-0.037] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1775	chr1	156038057	156038058	rs61748951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q22	Intergenic	rs61748951-A	0.0239	3E-10	(MTAG)	0.028	[0.019-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q22		rs61813324-T	NR	2E-13		0.0224	[0.016-0.028] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q22		rs61813324-T	NR	5E-16		0.028	[0.021-0.035] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q22	MEX3A	rs61813324-C	0.864324	2E-19		0.0182963	[0.014-0.022] unit decrease	Affymetrix [12370749]	N
1775	chr1	156049876	156049877	rs61813324	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs61813324-?	NR	6E-24				Affymetrix [~ 8270000] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q22		rs61813324-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q22	NA	rs61813324-T	0.1312	3E-24		0.0289	[0.023-0.034] unit increase	NR [~ 27400000] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q22	NA	rs61813324-T	0.1312	3E-24		0.0289	[0.023-0.034] unit increase	NR [~ 27400000] (imputed)	N
1775	chr1	156049876	156049877	rs61813324	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1q22	NA	rs61813324-T	0.1312	3E-24		0.0289	[0.023-0.034] unit increase	NR [~ 27400000] (imputed)	N
1775	chr1	156057416	156057417	rs112941217	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Ischemic heart disease in rheumatoid arthritis	224 Spanish ancestry patients, 2,765 Spanish ancestry controls	NA	1q22	LMNA	rs112941217-C	0.03	5E-7		4.81	[2.61-8.87]	Illumina [63089444] (imputed)	N
1775	chr1	156061221	156061222	rs7542186	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q22	LMNA	rs7542186-C	0.9608	3E-8	(East Asian)	0.0925	[0.06-0.125] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1775	chr1	156074844	156074845	rs6661281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q22		rs6661281-C	NR	2E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1775	chr1	156078375	156078376	rs116480793	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q22	NR	rs116480793-T	0.0218873	2E-9		0.202908	[0.14-0.27] unit increase	Affymetrix [21375087] (imputed)	N
1775	chr1	156078375	156078376	rs116480793	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs116480793-T	0.0219968	5E-9		0.136582	[0.09-0.183] unit increase	Affymetrix [17914406] (imputed)	N
1775	chr1	156078375	156078376	rs116480793	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1q22	LMNA	rs116480793-T	0.024264567	7E-6		1.2884976	[1.153366335-1.439461007]	Illumina [10439017] (imputed)	N
1775	chr1	156080443	156080444	rs58799304	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	1q22	NR	rs58799304-?	NR	3E-6		4.644	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1775	chr1	156081471	156081472	rs12131777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs12131777-C	NR	5E-11		0.0166	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1775	chr1	156083467	156083468	rs2485662	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q22	MEX3A	rs2485662-?	NR	6E-6	(TAG 50:2)	0.18771602	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1775	chr1	156083467	156083468	rs2485662	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q22	MEX3A	rs2485662-?	NR	6E-6	(TAG 48:1)	0.18686591	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1775	chr1	156084486	156084487	rs188625872	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	1q22	LMNA	rs188625872-C	0.0034	2E-6		3.7593985	[2.17-6.49]	Illumina [7521072] (imputed)	N
1775	chr1	156085374	156085375	rs547915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q22		rs547915-C	NR	2E-14		0.0242	[0.018-0.03] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1775	chr1	156087205	156087206	rs675661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q22	LMNA	rs675661-G	0.043408	6E-10		0.0336929	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1775	chr1	156088525	156088526	rs584025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q22		rs584025-?	NR	7E-21				NR [~ 8900000] (imputed)	N
1775	chr1	156089033	156089034	rs138554234	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	1q22	NR	rs138554234-A	0.05	4E-15		0.64	NR	Affymetrix, Illumina [6957974] (imputed)	N
1775	chr1	156089872	156089873	rs501791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q22	NR	rs501791-T	0.045421	4E-14		0.033478	[0.025-0.042] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1775	chr1	156089872	156089873	rs501791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q22	NR	rs501791-T	0.045019	1E-11		0.031343	[0.022-0.04] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1775	chr1	156091432	156091433	rs116251020	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LMNA	rs116251020-?	NR	4E-10	(female)	0.476833	[NR] unit increase	Affymetrix [NR] (imputed)	N
1775	chr1	156103996	156103997	rs569025	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q22		rs569025-A	0.1616	4E-16		0.1052	[0.08-0.13] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1775	chr1	156103996	156103997	rs569025	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs569025-A	0.6145	2E-71		0.1997	[0.18-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1775	chr1	156106184	156106185	rs505058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q22		rs505058-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1776	chr1	156107533	156107534	rs4641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q22	LMNA	rs4641-T	NR	1E-8		0.0189432	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1776	chr1	156109094	156109094	rs535843454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q22	LMNA	rs535843454-CA	0.055136	3E-14		0.039493166	[0.029-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1776	chr1	156110165	156110166	rs568036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q22		rs568036-G	NR	2E-15		0.0484	[0.036-0.06] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1776	chr1	156110165	156110166	rs568036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q22		rs568036-G	NR	7E-12		0.0417	[0.03-0.054] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1776	chr1	156110165	156110166	rs568036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q22	LMNA	rs568036-G	0.0414560000000001	8E-12		0.038036928	[0.027-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1776	chr1	156110166	156110167	rs568035	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q22		rs568035-T	0.8412	1E-6		0.0733	[0.044-0.103] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1776	chr1	156110166	156110167	rs568035	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs568035-T	0.3961	1E-9		0.097	[0.066-0.128] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1776	chr1	156111286	156111287	rs536857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs536857-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1776	chr1	156112421	156112422	rs11264447	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q22	LMNA	rs11264447-T	0.6552	1E-12		0.0141	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1776	chr1	156112469	156112470	rs78261031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q22	SEMA4A	rs78261031-A	0.061013	5E-9		0.027798738	[0.018-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1776	chr1	156129795	156129796	rs76719272	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q22	SEMA4A	rs76719272-T	0.1286	2E-10		0.2394	[0.17-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1776	chr1	156146639	156146640	rs41265017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q22		rs41265017-A	NR	1E-15		0.0487	[0.037-0.061] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1776	chr1	156148164	156148165	rs6701295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs6701295-C	NR	1E-18		0.0212	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1776	chr1	156153042	156153043	rs11264454	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	1q22	NR	rs11264454-?	NR	2E-8				Illumina [~ 10800000] (imputed)	N
1776	chr1	156153042	156153043	rs11264454	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q22	NR	rs11264454-G	0.4278	7E-7	(EA)	0.0327	[0.02-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1776	chr1	156154859	156154860	rs35643925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Parkinson's disease	2,638 European ancestry cases, 477,380 European ancestry controls, 340 East Asian ancestry cases, 175,788 East Asian ancestry controls	NA	1q22		rs35643925-A	NR	5E-9		0.5105	[0.34-0.68] unit increase	Affymetrix, Illumina [25844586] (imputed)	N
1776	chr1	156154859	156154860	rs35643925	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q22	SEMA4A	rs35643925-A	0.0195	8E-22		0.389	[0.31-0.47] unit increase	NR [7784415] (imputed)	N
1776	chr1	156163717	156163718	rs2241111	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1q22	SLC25A44	rs2241111-?	NR	6E-6		4.844	unit increase (EA, Australian cohort)	Illumina [610255]	N
1776	chr1	156169609	156169610	rs2072499	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	1q22	SLC25A44, KIAA0446	rs2072499-G	0.36	2E-9		1.2	1.13-1.27	Illumina [9210350] (imputed)	N
1776	chr1	156169609	156169610	rs2072499	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	1q22	CLCN6, SLC25A44	rs2072499-G	0.36	2E-10		1.18	[1.13-1.23]	Illumina [at least 371504] (imputed)	N
1776	chr1	156169609	156169610	rs2072499	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	1q22	SLC20A44	rs2072499-G	0.354	3E-7		1.22	[NR]	Illumina [610240]	N
1776	chr1	156169609	156169610	rs2072499	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	1q22	SLC25A44	rs2072499-G	0.35	3E-8		1.19	[1.08-1.30]	Illumina [307291]	N
1776	chr1	156171485	156171486	rs76102184	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q22	NR	rs76102184-C	0.975657	7E-10		0.0427784	[0.029-0.056] unit decrease	NR [NR]	N
1776	chr1	156171485	156171486	rs76102184	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs76102184-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1776	chr1	156189285	156189286	rs2758596	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1q22	PMF1, PMF1-BGLAP	rs2758596-?	NR	6E-6		4.844	unit increase (EA, Australian cohort)	Illumina [610255]	N
1776	chr1	156190362	156190363	rs72708294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q22	NR	rs72708294-A	NR	1E-10		0.0458	[0.032-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1776	chr1	156190362	156190363	rs72708294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q22	NR	rs72708294-A	NR	1E-10		0.046	[0.032-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1776	chr1	156195933	156195934	rs557685919	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q22	NR	rs557685919-T	0.00429517	2E-8		0.468997	[0.31-0.63] unit increase	Affymetrix [17914406] (imputed)	N
1776	chr1	156197379	156197380	rs2984613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1q22		rs2984613-T	0.373998	6E-10		0.0183055	[0.013-0.024] unit decrease	Illumina [13478778] (imputed)	N
1776	chr1	156197379	156197380	rs2984613	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	1q22	PMF1, BGLAP	rs2984613-C	0.65	2E-8				Affymetrix, Illumina [14227402] (imputed)	N
1776	chr1	156197379	156197380	rs2984613	24656865	Woo D	2014-03-18	Am J Hum Genet	Meta-analysis of genome-wide association studies identifies 1q22 as a susceptibility locus for intracerebral hemorrhage.	Intracerebral hemorrhage	664 European ancestry lobar cases, 881 European ancestry nonlobar cases, 1,481 European ancestry controls	513 European ancestry cases, 634 African American cases, 534 Hispanic cases, 1,552 European ancestry controls, 449 African American controls, 260 Hispanic controls	1q22	PMF1, SLC25A44	rs2984613-C	0.68	2E-10	(nonlobar)	1.33	[1.22-1.46]	Affymetrix, Illumina [5258103] (imputed)	N
1776	chr1	156198993	156198994	rs2758603	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	1q22	PMF1	rs2758603-C	0.34	1E-6		1.12	1.02-1.22	Illumina [up to 9449311] (imputed)	N
1776	chr1	156200444	156200445	rs2758605	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	1q22	PMF1, PMF1-BGLAP	rs2758605-G	0.87	3E-8		1.1627907	[1.11-1.2]	Affymetrix, Illumina [39235000] (imputed)	N
1776	chr1	156200670	156200671	rs2842870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q22		rs2842870-C	NR	1E-16		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1776	chr1	156200670	156200671	rs2842870	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1q22	PMF1, BGLAP	rs2842870-T	0.632	1E-8		0.361	[0.18-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1776	chr1	156202172	156202173	rs1052053	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	1q22	SEMA4A, PMF1	rs1052053-?	NR	3E-14				NR [~ 8000000] (imputed)	N
1776	chr1	156202172	156202173	rs1052053	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	1q22	PMF1, SEMA4A	rs1052053-?	NR	2E-12				NR [~ 8000000] (imputed)	N
1776	chr1	156202172	156202173	rs1052053	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	1q22	PMF1, SEMA4A	rs1052053-?	NR	1E-6				NR [~ 8000000] (imputed)	N
1776	chr1	156202172	156202173	rs1052053	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	1q22	PMF1, SEMA4A	rs1052053-?	NR	4E-11				NR [~ 8000000] (imputed)	N
1776	chr1	156202172	156202173	rs1052053	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	1q22	PMF1-BGLAP, PMF1	rs1052053-?	NR	5E-9				NR [~ 8000000] (imputed)	N
1776	chr1	156202639	156202640	rs2736609	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	1q22	PMF1	rs2736609-T	0.36	2E-19		0.003	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1776	chr1	156204652	156204653	rs2842873	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	1q22	PMF1, PMF1-BGLAP	rs2842873-T	0.37	2E-36		0.056	NR unit decrease	Illumina [9591901] (imputed)	N
1776	chr1	156204652	156204653	rs2842873	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	1q22	PMF1, BGLAP	rs2842873-T	0.37	3E-88		0.024	unit increase	NR [NR]	N
1776	chr1	156206120	156206121	rs1052067	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q22	NR	rs1052067-A	NR	3E-14		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1776	chr1	156206120	156206121	rs1052067	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q22	NR	rs1052067-A	NR	4E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1776	chr1	156206120	156206121	rs1052067	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q22	NR	rs1052067-G	0.713747	2E-11		0.0151045	[0.011-0.019] unit increase	NR [NR]	N
1776	chr1	156215898	156215899	rs2075165	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q22	NR	rs2075165-?	NR	3E-6		0.0384	[0.022-0.054] unit decrease	Illumina [at least 560000] (imputed)	N
1776	chr1	156218909	156218910	rs2241106	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	1q22	SMG5	rs2241106-?	NR	1E-16		0.04466	[0.034-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
1776	chr1	156223055	156223056	rs75854315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q22		rs75854315-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1776	chr1	156224528	156224529	rs12024813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	1q22		rs12024813-A	0.210274	1E-18		0.0393256	[0.031-0.048] unit decrease	Illumina [13477028] (imputed)	N
1776	chr1	156233188	156233189	rs2273833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	1q22	NR	rs2273833-C	0.787258	6E-21		0.042138	[0.033-0.051] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1776	chr1	156233188	156233189	rs2273833	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	1q22	SMG5	rs2273833-?	NR	1E-18		0.0741	[0.058-0.091] unit decrease novel	Illumina [6108953] (imputed)	N
1776	chr1	156235220	156235221	rs12118238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	1q22	NR	rs12118238-G	0.787073	2E-10		0.028525	[0.02-0.037] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1777	chr1	156245918	156245919	rs144991356	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	1q22	SMG5	rs144991356-CT	0.753	3E-8		0.0332	[0.021-0.045] unit increase	Illumina [7135436] (imputed)	N
1777	chr1	156255455	156255456	rs6684514	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	1q22	TMEM79	rs6684514-G	0.782	1E-7		0.0315	[0.02-0.043] unit increase	Illumina [7135436] (imputed)	N
1777	chr1	156255455	156255456	rs6684514	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	1q22	CCT3, TMEM79, c1orf85	rs6684514-G	0.76	1E-23		0.09	[0.070-0.110] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1777	chr1	156255455	156255456	rs6684514	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	1q22	CCT3, BGLAP, PAQR6, SMG5, TMEM79, C1orf182, C1orf85, VHLL	rs6684514-A	0.21	3E-9		0.086	[0.057-0.115] unit decrease	Illumina [561583]	N
1777	chr1	156270259	156270260	rs67034206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs67034206-T	0.27211	3E-28				Affymetrix, Illumina [24246363] (imputed)	N
1777	chr1	156271764	156271765	rs7536046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q22		rs7536046-T	NR	2E-9		0.0263	[0.018-0.035] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1777	chr1	156271764	156271765	rs7536046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q22		rs7536046-T	NR	3E-13		0.0373	[0.027-0.047] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1777	chr1	156273345	156273346	rs12127403	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	1q22	VHLL	rs12127403-A	0.7379	8E-19		0.0283	[0.022-0.035] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1777	chr1	156280968	156280969	rs2230195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q22		rs2230195-A	NR	5E-35		0.0537	[0.045-0.062] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1777	chr1	156280968	156280969	rs2230195	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs2230195-G	0.995817	7E-21				Affymetrix, Illumina [22063850] (imputed)	N
1777	chr1	156280970	156280971	rs2230194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q22	CCT3	rs2230194-A	0.00145899999999999	1E-11		0.19552262	[0.14-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
1777	chr1	156280970	156280971	rs2230194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,166 South Asian ancestry individuals	NA	1q22	NR	rs2230194-G	0.917034	6E-10		0.176661	[0.12-0.23] SD units increase	Affymetrix, Illumina [28471494] (imputed)	N
1777	chr1	156280970	156280971	rs2230194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q22	NR	rs2230194-G	0.954399	5E-15				Affymetrix, Illumina [21126107] (imputed)	N
1777	chr1	156290655	156290656	rs11548200	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1q22	CCT3	rs11548200-T	NR	6E-10		0.0156005	[0.011-0.021] unit increase	Affymetrix [10061374] (imputed)	N
1777	chr1	156290655	156290656	rs11548200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q22	CCT3	rs11548200-C	0.0661890000000001	8E-15		0.034588348	[0.026-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1777	chr1	156290655	156290656	rs11548200	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q22	CCT3	rs11548200-C	0.07098	7E-10		0.025499033	[0.017-0.034] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1777	chr1	156292365	156292366	rs11264472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q22	CCT3	rs11264472-G	0.504764	6E-11		0.014535731	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1777	chr1	156296464	156296465	rs12409324	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q22		rs12409324-A	0.572	2E-6		0.0656	[0.043-0.089] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1777	chr1	156297287	156297288	rs60724735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1q22		rs60724735-C	0.210219	1E-22		0.0375723	[0.03-0.045] unit decrease	Illumina [13479135] (imputed)	N
1777	chr1	156299846	156299847	rs12029695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1q22	NR	rs12029695-C	0.78733	4E-30		0.056801	[0.047-0.067] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1777	chr1	156306101	156306138	rs146074039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	1q22		rs146074039-A	0.211243	8E-13		0.0370075	[0.027-0.047] unit decrease	Illumina [13466143] (imputed)	N
1777	chr1	156318140	156318141	rs12132919	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	1q22	TMEM79	rs12132919-A	0.2803	3E-11		0.0289	[0.02-0.038] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1777	chr1	156320523	156320524	rs147633738	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q22	TSACC	rs147633738-C	0.933923	8E-9		0.0241746	[0.016-0.032] unit increase	NR [16516521] (imputed)	N
1777	chr1	156321153	156321154	rs11264477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	1q22	NR	rs11264477-C	0.787352	6E-17		0.040768	[0.031-0.05] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1777	chr1	156321597	156321598	rs12035737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q22		rs12035737-T	NR	2E-18		0.0389	[0.03-0.048] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1777	chr1	156327884	156327885	rs111929202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q22		rs111929202-C	0.212458	1E-35		0.0556057	[0.047-0.064] unit increase	Illumina [13476266] (imputed)	N
1777	chr1	156327884	156327885	rs111929202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1q22		rs111929202-C	0.212476	2E-9		0.0270955	[0.018-0.036] unit increase	Illumina [13476299] (imputed)	N
1777	chr1	156341493	156341494	rs7525133	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q22	RHBG	rs7525133-A	0.09	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1777	chr1	156347308	156347309	rs56353055	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q22	RHBG	rs56353055-G	0.1286	3E-6	(African)			Illumina [4404269] (imputed)	N
1777	chr1	156347308	156347309	rs56353055	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q22	RHBG	rs56353055-G	0.09463	1E-6				Illumina [4404269] (imputed)	N
1777	chr1	156356479	156356480	rs6686886	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q22	CCT3, C1orf182, C1orf61, RHBG	rs6686886-G	0.14	9E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1778	chr1	156403680	156403681	rs12138127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q22	C1orf61	rs12138127-C	NR	4E-8		0.0179219	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1778	chr1	156403680	156403681	rs12138127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q22		rs12138127-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1778	chr1	156406380	156406381	rs11264483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q22		rs11264483-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1778	chr1	156406852	156406853	rs4414033	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q22	NA	rs4414033-A	0.6048	4E-13		0.0129	[0.0094-0.0164] unit increase	NR [~ 27400000] (imputed)	N
1778	chr1	156415672	156415673	rs35208023	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q22	RP11-98G7.1	rs35208023-C	NR	4E-8		0.0163833	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1778	chr1	156415672	156415673	rs35208023	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q22	RP11-98G7.1	rs35208023-C	NR	2E-10		0.0191105	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1778	chr1	156415672	156415673	rs35208023	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q22	RP11-98G7.1	rs35208023-C	NR	3E-9		0.0179511	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1778	chr1	156419785	156419786	rs12141791	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	1q22		rs12141791-A	0.7	8E-11		0.0739	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1778	chr1	156425709	156425710	rs7554299	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q22		rs7554299-A	0.854	3E-18		0.1909	[0.15-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1778	chr1	156430748	156430749	rs750439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q22	MEF2D	rs750439-C	NR	3E-9		0.0194537	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1778	chr1	156430748	156430749	rs750439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q22	MEF2D	rs750439-C	NR	4E-8		0.0180611	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1778	chr1	156432917	156432918	rs10796959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q22	MEF2D	rs10796959-A	NR	4E-8		0.0181973	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	1q22		rs1050316-G	0.3621	2E-15		0.156777	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q22		rs1050316-T	NR	5E-11		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1q22	MEF2D	rs1050316-G	0.347	9E-30		0.061	[0.051-0.071] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1q22	MEF2D	rs1050316-G	0.346	3E-21	(men)	0.074	[0.058-0.09] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1q22	MEF2D	rs1050316-G	0.346	3E-12	(women)	0.052	[0.038-0.066] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	1q22	MEF2D	rs1050316-T	NR	2E-11		0.0098	[0.0069-0.0127] unit decrease	Affymetrix [9304965] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q22	MEF2D	rs1050316-T	0.6515	2E-14		0.0295196	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1778	chr1	156434702	156434703	rs1050316	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q22	MEF2D	rs1050316-T	0.6515	4E-11		0.02540854	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1778	chr1	156446241	156446242	rs2274316	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	1q22	MEF2D, APOA1BP	rs2274316-C	0.36	1E-7		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1778	chr1	156446241	156446242	rs2274316	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	1q22	MEF2D, APOA1BP	rs2274316-C	0.36	1E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1778	chr1	156450718	156450719	rs1185700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q22	NR	rs1185700-A	0.243946	1E-15		0.018179	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1778	chr1	156450739	156450740	rs1925950	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	1q22	MEF2D	rs1925950-G	0.35	9E-22		1.07	[1.06-1.09]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1q22	NR	rs2274319-C	0.651757	4E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix [23037915] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q22		rs2274319-T	0.347	2E-8				Affymetrix [10369434] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q22	NR	rs2274319-?	NR	1E-8				NR [up to 7000000]	N
1778	chr1	156450872	156450873	rs2274319	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q22	NR	rs2274319-?	NR	8E-10				NR [up to 7000000]	N
1778	chr1	156450872	156450873	rs2274319	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q22	NR	rs2274319-?	NR	2E-20				NR [up to 7000000]	N
1778	chr1	156450872	156450873	rs2274319	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q22	NR	rs2274319-?	NR	4E-21				NR [up to 7000000]	N
1778	chr1	156450872	156450873	rs2274319	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q22	NR	rs2274319-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q22	NR	rs2274319-?	NR	6E-20				Affymetrix [~ 8270000] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs2274319-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q22	NA	rs2274319-T	0.3461	2E-12		0.0126	[0.0091-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1778	chr1	156450872	156450873	rs2274319	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	1q22	MEF2D	rs2274319-?	NR	2E-18		1.072	[1.056-1.089]	Illumina [13763073] (imputed)	N
1778	chr1	156452869	156452870	rs2282286	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	1q22		rs2282286-G	0.3634	1E-14		0.152276	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1778	chr1	156454382	156454383	rs1750304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q22		rs1750304-G	NR	2E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1778	chr1	156456300	156456301	rs3790455	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	1q22	MEF2D	rs3790455-C	0.34	7E-11		1.2	[1.14-1.27]	Illumina [1246388] (imputed)	N
1778	chr1	156456528	156456529	rs1171563	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1q22	NR	rs1171563-G	0.23	4E-8		0.28	[0.18-0.38] unit decrease	Affymetrix [19941912] (imputed)	N
1778	chr1	156458839	156458840	rs3790457	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	1q22		rs3790457-?	NR	5E-9				NR [9705931] (imputed)	N
1778	chr1	156461706	156461707	rs3790459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	1q22		rs3790459-T	NR	4E-9		0.1159	[0.077-0.155] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	9E-14	(128 ms)	0.0430636	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	7E-17	(148 ms)	0.0472677	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	6E-16	(170 ms)	0.0447032	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	2E-9	(84 ms)	0.0358155	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	2E-16	(146 ms)	0.0462661	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	1E-12	(120 ms)	0.0415024	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q22	MEF2D	rs10908504-C	0.351537	1E-10	(118 ms)	0.0374196	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q22	NR	rs10908504-A	0.651844	5E-41		0.026335	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1778	chr1	156464428	156464429	rs10908504	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	1q22	MEF2D	rs10908504-C	0.347013	2E-9		0.122427754	[0.083-0.162] unit increase	Affymetrix [7288503] (imputed)	N
1778	chr1	156464544	156464545	rs76616066	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q22	NR	rs76616066-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1778	chr1	156468242	156468243	rs10908505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q22	MEF2D	rs10908505-A	0.651931	2E-39		0.031142844	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr1	156468242	156468243	rs10908505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q22		rs10908505-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1778	chr1	156469363	156469364	rs3790461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q22	MEF2D	rs3790461-A	0.242697	4E-13		0.018712088	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1778	chr1	156471997	156471998	rs1171548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q22	MEF2D	rs1171548-T	0.22954	4E-9		0.015464481	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1778	chr1	156473113	156473114	rs12136856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q22	MEF2D	rs12136856-C	NR	2E-8		0.0167076	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1778	chr1	156473113	156473114	rs12136856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q22	MEF2D	rs12136856-C	NR	4E-9		0.0174447	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1778	chr1	156473113	156473114	rs12136856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q22	MEF2D	rs12136856-C	NR	8E-12		0.0204107	[0.015-0.026] unit increase	Affymetrix [321114] (imputed)	N
1778	chr1	156473113	156473114	rs12136856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q22	MEF2D	rs12136856-C	NR	3E-10		0.0188716	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1778	chr1	156473113	156473114	rs12136856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q22	MEF2D	rs12136856-G	0.652641	1E-25		0.024818817	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1778	chr1	156480830	156480831	rs11264489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q22	Intergenic	rs11264489-A	0.6393	5E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1778	chr1	156489973	156489974	rs1778830	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q22	IQGAP3	rs1778830-G	0.637787	4E-12		0.009908	[0.0071-0.0127] unit decrease	Affymetrix [12370749]	N
1778	chr1	156497137	156497138	rs12747719	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs12747719-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1778	chr1	156499550	156499551	rs137933779	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	1q22	IQGAP3	rs137933779-?	NR	6E-11		0.06446	[0.045-0.084] unit increase novel	Illumina [6108953] (imputed)	N
1779	chr1	156503946	156503947	rs6661934	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q22	NR	rs6661934-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1779	chr1	156511800	156511801	rs115910925	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q22	NR	rs115910925-C	0.01394	2E-9	(FERMT2)	0.1233	NR unit increase	Illumina [1671387] (imputed)	N
1779	chr1	156515295	156515295	rs111440978	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	1q22	NR	rs111440978-CTT		8E-6		0.1311	[0.074-0.189] unit increase	Illumina [12770451] (imputed)	N
1779	chr1	156588438	156588439	rs7541549	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	BCAN	rs7541549-T	0.7665625	6E-12	(BCAN, 3461_58_1)	0.20112698	[0.14-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1779	chr1	156597384	156597385	rs74666439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAN	5,366 Icelandic ancestry individuals	NA	1q23.1		rs74666439-G	0.02166	2E-16		0.532001	[0.4-0.66] unit increase	Illumina [7506463] (imputed)	N
1779	chr1	156615113	156615114	rs2365715	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAN	5,366 Icelandic ancestry individuals	NA	1q23.1		rs2365715-G	0.3792	1E-31		0.227245	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1779	chr1	156615113	156615114	rs2365715	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	NR	rs2365715-G	0.396	4E-13	(Brevican core protein, BCAN.3461.58.1)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1779	chr1	156626795	156626796	rs41267397	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	BCAN	rs41267397-T	0.004	2E-26	(Brevican core protein, BCAN.3461.58.1)	2.02	[1.65-2.39] unit decrease	Affymetrix [10572788] (imputed)	N
1780	chr1	156640155	156640156	rs3748570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q23.1	NR	rs3748570-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1780	chr1	156663476	156663477	rs4402118	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs4402118-T	0.083	9E-15		0.1714	[0.13-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1780	chr1	156663476	156663477	rs4402118	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs4402118-T	0.4208	3E-37		0.2357	[0.2-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1780	chr1	156663476	156663477	rs4402118	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs4402118-T	0.0805	7E-22		0.1826	[0.15-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1780	chr1	156663476	156663477	rs4402118	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs4402118-T	0.4178	2E-75		0.232	[0.21-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1780	chr1	156686004	156686005	rs12140437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.1	NR	rs12140437-C	NR	4E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1780	chr1	156688151	156688152	rs11264531	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q23.1	ISG20L2	rs11264531-T	0.3592	3E-13		0.02827919	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1780	chr1	156700650	156700651	rs12145743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.1		rs12145743-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1780	chr1	156700650	156700651	rs12145743	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1q23.1	HDGF, PMVK	rs12145743-T	0.669	3E-8	(Trans-ethnic initial)	0.0203	[0.013-0.027] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1780	chr1	156700650	156700651	rs12145743	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q23.1	HDGF, PMVK	rs12145743-G	0.34	2E-8		0.02	[NR] unit increase	NR [NR] (imputed)	N
1780	chr1	156707774	156707775	rs6670122	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.1	NR	rs6670122-?	NR	2E-13				Affymetrix [NR]	N
1780	chr1	156713557	156713558	rs4399146	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	HDGF	rs4399146-G	0.71734375	3E-23	(HDGF, 8953_47_3)	0.26891747	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1780	chr1	156725000	156725001	rs9427242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q23.1		rs9427242-A	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1780	chr1	156727252	156727253	rs12039810	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDGF	5,368 Icelandic ancestry individuals	NA	1q23.1		rs12039810-A	0.2858	1E-42		0.278241	[0.24-0.32] unit decrease	Illumina [7506463] (imputed)	N
1780	chr1	156731754	156731755	rs138667606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q23.1		rs138667606-T	NR	8E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1780	chr1	156747188	156747189	rs9330272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q23.1		rs9330272-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1781	chr1	156774110	156774111	rs16837677	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	1q23.1	PRCC, SH2D2A	rs16837677-?		2E-6		1.54	[1.29-1.84]	Illumina [1444884]	N
1781	chr1	156776716	156776717	rs928391	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q23.1	SH2D2A	rs928391-C	0.2679	2E-10		0.0260305	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1781	chr1	156780317	156780317	rs575424281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q23.1		rs575424281-ATT	NR	5E-13		0.0203	[0.015-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1781	chr1	156780330	156780330	rs59571284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q23.1	SH2D2A	rs59571284-ATT	0.270525	2E-14		0.019609556	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156783291	156783292	rs2182761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q23.1	SH2D2A	rs2182761-T	0.64861	1E-18		0.02090488	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr1	156784981	156784982	rs926103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q23.1		rs926103-C	NR	8E-11		0.0678	[0.047-0.088] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1781	chr1	156784981	156784982	rs926103	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1q23.1	SH2D2A	rs926103-T	0.354	1E-11		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1781	chr1	156784981	156784982	rs926103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1q23.1		rs926103-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1781	chr1	156785616	156785617	rs1800601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	1q23.1		rs1800601-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1781	chr1	156790683	156790684	rs2777926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q23.1	NTRK1	rs2777926-G	0.267884	3E-10		0.015849357	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156813649	156813650	rs10908521	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Uric acid clearance	768 Hispanic children from 260 families		1q23.1	INSRR	rs10908521-G	0.21	3E-7		0.35	[0.21-0.49] unit decrease	Illumina [899892]	N
1781	chr1	156825003	156825004	rs4661064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q23.1		rs4661064-C	NR	1E-8		0.0252	[0.017-0.034] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1781	chr1	156827702	156827703	rs115699453	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	1q23.1	NR	rs115699453-?		3E-7	(PCB169)	1.21	[0.74-1.68] unit decrease	Illumina [8736858] (imputed)	N
1781	chr1	156835587	156835588	rs6677720	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	White blood cell count	6,007 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	1q23.1		rs6677720-C	0.066	5E-9		0.22	[0.14-0.3] unit decrease	Illumina [7880617]	N
1781	chr1	156837415	156837416	rs11264578	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1q23.1	NR	rs11264578-?	NR	3E-26		10.61	NR z score decrease	Illumina [at least 830937] (imputed)	N
1781	chr1	156848945	156848946	rs6339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs6339-T	0.0517389	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
1781	chr1	156848945	156848946	rs6339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q23.1	NR	rs6339-T	0.060564	2E-13		0.02951	[0.022-0.037] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1781	chr1	156860461	156860462	rs2768762	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs2768762-T	0.4205	3E-8		0.0647	[0.042-0.088] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1781	chr1	156860461	156860462	rs2768762	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs2768762-T	0.7974	6E-80		0.3675	[0.33-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1781	chr1	156860461	156860462	rs2768762	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs2768762-T	0.4147	7E-10		0.0615	[0.042-0.081] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1781	chr1	156860461	156860462	rs2768762	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs2768762-T	0.7897	4E-140		0.3331	[0.31-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1781	chr1	156867989	156867990	rs2182760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1q23.1		rs2182760-A	0.466584	1E-20		0.0308989	[0.024-0.037] unit increase	Illumina [13478928] (imputed)	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.098	1E-12	(ADP low 1)	0.271	[0.2-0.35] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.096	3E-11	(ephinephrine low 1)	0.269	[0.19-0.35] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.095	6E-9	(ADP high 2)	0.232	[0.15-0.31] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.095	3E-12	(ADP low 2)	0.283	[0.2-0.36] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.094	6E-12	(ephinephrine high 2)	0.275	[0.2-0.35] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	1q23.1	PEAR1	rs12566888-T	0.094	3E-13	(ephinephrine low 2)	0.291	[0.21-0.37] unit decrease	Illumina [129094]	N
1781	chr1	156869046	156869047	rs12566888	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	1q23.1	PEAR1	rs12566888-A	0.103	5E-19	(epinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1781	chr1	156869046	156869047	rs12566888	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	1q23.1	PEAR1	rs12566888-A	0.102	4E-16	(ADP)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q23.1		rs12041331-A	NR	5E-38		0.0335	[0.028-0.039] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Mean platelet volume	7,440 African American individuals, 5,466 Hispanic or Latin American individuals, 10,120 European ancestry individuals, 447 East Asian ancestry individuals, 12 individuals	7,857 African ancestry individuals	1q23.1		rs12041331-A	0.218437	3E-12		0.0823359	[0.059-0.105] unit decrease	NR [NR]	N
1781	chr1	156869713	156869714	rs12041331	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs12041331-A	0.6317	2E-10		0.1176	[0.082-0.153] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	1q23.1		rs12041331-A	0.092	1E-6		0.0787	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.1	PEAR1	rs12041331-A	0.086089	6E-22		0.03857549	[0.031-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q23.1	PEAR1	rs12041331-A	0.086099	2E-12		0.028516041	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.1	PEAR1	rs12041331-A	0.086085	3E-84		0.0777998	[0.07-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs12041331-A	0.172476	3E-49				Affymetrix, Illumina [24588908] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1q23.1	NR	rs12041331-G	0.557083	5E-21		0.035167	[0.028-0.042] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs12041331-G	0.900716	1E-145				Affymetrix, Illumina [17210439] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q23.1	NR	rs12041331-G	0.913514	1E-126		0.081681	[0.075-0.088] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	1q23.1	NR	rs12041331-G	0.601957	3E-15		0.112134	[0.084-0.14] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q23.1	PEAR1	rs12041331-?	NR	3E-13		0.03112	[0.023-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q23.1	PEAR1	rs12041331-A	0.0865	2E-13		0.04693609	[0.034-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1781	chr1	156869713	156869714	rs12041331	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q23.1	PEAR1	rs12041331-A	0.0865	6E-34		0.07835613	[0.066-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1781	chr1	156873434	156873435	rs145662369	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	PEAR1	rs145662369-T	0.024	4E-16	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11109.56.3)	0.67	[0.51-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1781	chr1	156873434	156873435	rs145662369	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	PEAR1	rs145662369-T	0.024	1E-17	(Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1, SVEP1.11178.21.3)	0.7	[0.54-0.86] unit increase	Affymetrix [10572788] (imputed)	N
1781	chr1	156877519	156877520	rs149254521	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	1q23.1		rs149254521-?	NR	3E-9		0.155283	[0.097-0.214] unit decrease	NR [9800000] (imputed)	N
1781	chr1	156877519	156877520	rs149254521	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	1q23.1		rs149254521-?	NR	6E-34		0.304696	[0.25-0.36] unit decrease	NR [9800000] (imputed)	N
1781	chr1	156877519	156877520	rs149254521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.1	PEAR1	rs149254521-G	6.99000000000005E-4	2E-14		0.39439932	[0.29-0.5] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156878043	156878044	rs147639000	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SVEP1	5,367 Icelandic ancestry individuals	NA	1q23.1		rs147639000-A	0.02281	2E-13		0.435166	[0.32-0.55] unit increase	Illumina [7506463] (imputed)	N
1781	chr1	156878472	156878473	rs77795865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q23.1	PEAR1	rs77795865-T	0.03546	5E-10		0.03794647	[0.026-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr1	156878472	156878473	rs77795865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.1	PEAR1	rs77795865-T	0.0354640000000001	2E-22		0.058709532	[0.047-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1781	chr1	156878472	156878473	rs77795865	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q23.1	PEAR1	rs77795865-T	0.035	2E-9		0.060348	[0.041-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1781	chr1	156881054	156881058	rs146377491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.1	PEAR1	rs146377491-T	0.096913	9E-37		0.048535608	[0.041-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr1	156881054	156881058	rs146377491	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q23.1	PEAR1	rs146377491-T	0.0959	1E-20		0.05809584	[0.046-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1781	chr1	156883492	156883493	rs11264581	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	PEAR1	rs11264581-G	0.82265625	7E-9	(PEAR1, 8275_31_3)	0.18434845	[0.12-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1781	chr1	156883545	156883546	rs12137505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs12137505-G	0.426783	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
1781	chr1	156883545	156883546	rs12137505	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	PEAR1	rs12137505-G	0.406	8E-19	(Platelet endothelial aggregation receptor 1, PEAR1.8275.31.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1781	chr1	156890671	156890672	rs41273221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.1	LRRC71	rs41273221-C	0.153844	4E-11		0.020481862	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr1	156891504	156891514	rs552668607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q23.1	LRRC71	rs552668607-A	0.211578	5E-13		0.019911971	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr1	156894005	156894006	rs822438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q23.1		rs822438-C	0.47	2E-16		8.21	z score increase	Affymetrix [9061022] (imputed)	N
1782	chr1	156902258	156902259	rs822430	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q23.1	LRRC71	rs822430-A	0.5221	4E-12		0.013	[0.0093-0.0167] unit decrease	Affymetrix [18391927] (imputed)	N
1782	chr1	156907080	156907081	rs945508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q23.1		rs945508-C	NR	2E-12		0.0144	[0.01-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1782	chr1	156907080	156907081	rs945508	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q23.1	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs945508-?		8E-15				NR [7428630] (imputed)	N
1782	chr1	156907080	156907081	rs945508	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q23.1	ARHGEF11	rs945508-T	0.46457	3E-9		0.0108888	[0.0073-0.0145] unit decrease	NR [13737936] (imputed)	N
1782	chr1	156907080	156907081	rs945508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q23.1		rs945508-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1782	chr1	156907080	156907081	rs945508	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q23.1		rs945508-?	NR	2E-9		0.0123647	[0.0083-0.0164] unit decrease	Affymetrix [20259828] (imputed)	N
1782	chr1	156907114	156907115	rs868188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	ARHGEF11	rs868188-C	0.355939	7E-12		0.015745351	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1782	chr1	156911378	156911379	rs2275200	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q23.1	NR	rs2275200-?	NR	6E-7		4.984	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1782	chr1	156939174	156939175	rs1336149	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	1q23.1	ARHGEF11	rs1336149-?	NR	2E-9		1.093	[1.062-1.125]	Illumina [13537761] (imputed)	N
1782	chr1	156958471	156958472	rs75533977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.1	ARHGEF11	rs75533977-A	0.08007	8E-12		0.027963087	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr1	156962190	156962191	rs4292955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q23.1	ARHGEF11	rs4292955-T	0.151114	5E-12		0.021911237	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr1	156969057	156969058	rs883425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q23.1	ARHGEF11	rs883425-A	0.13648	3E-10		0.02060131	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr1	156969895	156969896	rs1572411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.1	ARHGEF11	rs1572411-T	0.749985	4E-12		0.017946163	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1782	chr1	156981347	156981348	rs6686367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q23.1		rs6686367-A	0.433399	2E-12		0.0142025	[0.01-0.018] unit decrease	Illumina [13479295] (imputed)	N
1782	chr1	156981347	156981348	rs6686367	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q23.1	ARHGEF11	rs6686367-?	NR	2E-16		0.023484059	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
1782	chr1	156984038	156984039	rs1763908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q23.1	NR	rs1763908-G	0.768364	3E-12		0.015318	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1782	chr1	156984038	156984039	rs1763908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.1		rs1763908-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1782	chr1	157017404	157017405	rs12403413	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q23.1		rs12403413-C	0.848	7E-11				Affymetrix [10369434] (imputed)	N
1782	chr1	157017404	157017405	rs12403413	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q23.1	NR	rs12403413-?	NR	3E-6		4.703	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1783	chr1	157038590	157038591	rs9426942	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q23.1	PEAR1, LRRC71, ARHGEF11, ETV3L	rs9426942-?		2E-9				NR [7428630] (imputed)	N
1783	chr1	157042868	157042870	rs76876052	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	1q23.1	NR	rs76876052-AT	0.2334	5E-6		0.161	[0.092-0.23] unit decrease	Illumina [10677593] (imputed)	N
1783	chr1	157055592	157055593	rs6427347	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q23.1		rs6427347-A	0.49	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1783	chr1	157055595	157055596	rs6427348	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q23.1	NR	rs6427348-G	0.4725	2E-8				NR [9056863] (imputed)	N
1783	chr1	157089146	157089147	rs4661089	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q23.1	ETV3L	rs4661089-T	NR	2E-6		1.0605578	NR	Affymetrix, Illumina [8278136] (imputed)	N
1783	chr1	157108158	157108159	rs116785379	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.1	ETV3	rs116785379-C	0.107	7E-16		1.211	[1.16-1.26]	Illumina [11270530] (imputed)	N
1783	chr1	157119914	157119915	rs80237341	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q23.1	NR	rs80237341-C	NR	1E-11		1.147	[1.10-1.19]	Affymetrix, Illumina [29235255] (imputed)	N
1783	chr1	157119914	157119915	rs80237341	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	1q23.1	NR	rs80237341-C	0.103	2E-7		1.165	[1.10-1.23]	Affymetrix, Illumina [10186136] (imputed)	N
1783	chr1	157130565	157130566	rs6427356	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q23.1	ETV3L, ETV3	rs6427356-G	0.28	8E-6				Perlegen [378332]	N
1783	chr1	157149419	157149420	rs4661093	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B virus-related hepatocellular carcinoma vs hepatitis B virus-related decompensated cirrhosis	214 Chinese ancestry hepatocellular carcinoma cases, 188 Chinese ancestry decompensated cirrhosis controls	NA	1q23.1	ETV3	rs4661093-A	0.0882	2E-6		2.841	NR	Affymetrix [607153]	N
1784	chr1	157180101	157180102	rs144824089	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q23.1	NR	rs144824089-?	NR	4E-6		0.7571	[0.43-1.09] unit decrease	Illumina [at least 560000] (imputed)	N
1784	chr1	157211664	157211665	rs11808562	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1q23.1	NR	rs11808562-A	0.0302	2E-6		0.4739	[0.28-0.67] unit increase	Illumina [NR] (imputed)	N
1784	chr1	157211664	157211665	rs11808562	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1q23.1	NR	rs11808562-A	0.0302	2E-6		0.4737	[0.28-0.67] unit increase	Illumina [NR] (imputed)	N
1784	chr1	157245452	157245453	rs74120306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	7,542 Hispanic or Latin American individuals	NA	1q23.1	NR	rs74120306-C	0.983172	9E-10		0.38959	[0.27-0.51] SD units increase	Affymetrix, Illumina [25652697] (imputed)	N
1784	chr1	157256628	157256629	rs6702965	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q23.1	NR	rs6702965-T	0.118	4E-6	(IFNgamma_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
1784	chr1	157276131	157276132	rs7527191	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q23.1	NR	rs7527191-?		6E-6				Illumina [4322238] (imputed)	N
1785	chr1	157296027	157296028	rs9426948	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	1q23.1		rs9426948-T	0.2029	2E-6		1.852	[1.434-2.391]	Affymetrix [7975321] (imputed)	N
1785	chr1	157401705	157401706	rs11264728	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.1	NR	rs11264728-?	NR	3E-21				Affymetrix [NR]	N
1786	chr1	157429140	157429141	rs61800544	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1q23.1	NR	rs61800544-?	NR	2E-7		0.692432	[0.43-0.95] unit increase	NR [13958389] (imputed)	N
1786	chr1	157437509	157437510	rs6686423	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	1q23.1	FCRL5	rs6686423-A	0.31	8E-6		0.194	[0.11-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1786	chr1	157487950	157487951	rs2873345	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs2873345-T	0.0879	6E-16		0.1656	[0.13-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1786	chr1	157487950	157487951	rs2873345	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs2873345-T	0.4096	5E-27		0.1742	[0.14-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1786	chr1	157488084	157488085	rs1571967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	9,368 Hispanic or Latin American individuals	NA	1q23.1	NR	rs1571967-C	0.930596	3E-13		0.227081	[0.17-0.29] SD units increase	Affymetrix, Illumina [26925380] (imputed)	N
1786	chr1	157497159	157497160	rs11264750	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1q23.1	FCRL5	rs11264750-G	NR	9E-13		0.75	[0.67-0.83]	Illumina [NR] (imputed)	N
1786	chr1	157497159	157497160	rs11264750	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1q23.1	FCRL5	rs11264750-G	NR	2E-12		0.751	[0.67-0.83]	Illumina [5719137] (imputed)	N
1786	chr1	157502015	157502016	rs112806509	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.1	NR	rs112806509-A	0.097	2E-15		0.812	[0.76-0.86]	Illumina [11270530] (imputed)	N
1786	chr1	157508800	157508801	rs1972239	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	1q23.1	FCRL5	rs1972239-?	0.18	3E-7		22.0	unit increase	Illumina [120975] (imputed)	N
1786	chr1	157527249	157527250	rs2779157	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.1	NR	rs2779157-T	0.1451	7E-24		0.0373	[0.03-0.045] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1786	chr1	157542448	157542449	rs11264765	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs11264765-C	0.888	5E-6		0.0799	[0.046-0.114] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1786	chr1	157542448	157542449	rs11264765	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs11264765-C	0.5037	9E-12		0.1065	[0.076-0.137] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1786	chr1	157542448	157542449	rs11264765	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs11264765-C	0.8889	2E-23		0.1539	[0.12-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1786	chr1	157542448	157542449	rs11264765	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs11264765-C	0.5166	2E-70		0.1973	[0.18-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1787	chr1	157559121	157559122	rs11582663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	FCRL4	rs11582663-T	0.144	3E-322	(Fc receptor-like protein 4, FCRL4.8973.23.3)	1.13	[1.07-1.19] unit decrease	Affymetrix [10572788] (imputed)	N
1787	chr1	157559348	157559349	rs113916332	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.1	NR	rs113916332-C	0.01916	2E-8	(SEPT11)	0.03043	NR unit increase	Illumina [1671387] (imputed)	N
1787	chr1	157561419	157561420	rs11591129	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs11591129-T	0.8246875	7E-27	(FCRL3, 4440_15_2)	0.35323364	[0.29-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1787	chr1	157561419	157561420	rs11591129	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs11591129-T	0.8246875	2E-283	(FCRL4, 8973_23_3)	1.0633303	[1.01-1.12] unit increase	Illumina [> 1000000] (imputed)	N
1787	chr1	157565969	157565970	rs1885560	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q23.1	Intergenic	rs1885560-?		6E-6		1.0526316	[1.03-1.09]	Illumina [7645193] (imputed)	N
1787	chr1	157568413	157568414	rs78950792	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.1	NR	rs78950792-C	0.0122	3E-10	(SEPT11)	0.04157	NR unit increase	Illumina [1671387] (imputed)	N
1787	chr1	157570187	157570190	rs200240998	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	NR	rs200240998-C	0.349	3E-139	(Fc receptor-like protein 4, FCRL4.8973.23.3)	0.62	[0.58-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1787	chr1	157628418	157628419	rs201177081	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.1	NR	rs201177081-C	0.01568	3E-8	(SEPT11)	0.03193	NR unit increase	Illumina [1671387] (imputed)	N
1787	chr1	157632010	157632011	rs6427389	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	1q23.1	FCRL3	rs6427389-C	0.7680974876762086	5E-9	(East Asian)	1.1437908	[1.09331878146096-1.19659278934148]	NR [3611808] (imputed)	N
1787	chr1	157635372	157635373	rs6677006	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	NR	rs6677006-T	0.099	6E-38	(Fc receptor-like protein 4, FCRL4.8973.23.3)	0.55	[0.47-0.63] unit increase	Affymetrix [10572788] (imputed)	N
1787	chr1	157636073	157636074	rs11264790	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1q23.1		rs11264790-T	NR	2E-8		0.108558	[0.071-0.147] unit decrease	NR [2787054] (imputed)	N
1787	chr1	157636656	157636657	rs12125713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCRL4	5,363 Icelandic ancestry individuals	NA	1q23.1		rs12125713-G	0.2706	5E-87		0.401896	[0.36-0.44] unit increase	Illumina [7506463] (imputed)	N
1787	chr1	157661847	157661848	rs11264798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1q23.1		rs11264798-G	NR	2E-9		0.0517	[0.035-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1787	chr1	157668389	157668390	rs7522061	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	FCRL3	rs7522061-C	0.47	7E-182	(FCRL3, 4440_15_2)	0.68136525	[0.64-0.72] unit increase	Illumina [> 1000000] (imputed)	N
1787	chr1	157668389	157668390	rs7522061	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.1	FCRL3, RP11-367J7.3, VDAC1P9	rs7522061-C	0.4330986	5E-57	(Fc receptor-like protein 3)	0.6757	[0.6-0.75] unit increase	Affymetrix [509946]	N
1787	chr1	157668992	157668993	rs2210913	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	1q23.1	FCRL3	rs2210913-T		9E-7		1.23	[NR]	Illumina [up to 9464381] (imputed)	N
1787	chr1	157669277	157669278	rs3761959	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1q23.1		rs3761959-T	NR	1E-10		1.08	[1.05-1.1]	NR [13810676] (imputed)	N
1787	chr1	157669277	157669278	rs3761959	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q23.1	NR	rs3761959-?	NR	3E-29	(FCRL3)			Illumina [~ 4000000] (imputed)	N
1787	chr1	157669277	157669278	rs3761959	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and LDL levels (pleiotropy)	215,725 individuals	NA	1q23.1	FCRL3	rs3761959-?	NR	1E-6			[0.8596-0.9422]	NR [2491989]	N
1787	chr1	157669277	157669278	rs3761959	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1q23.1	FCRL3	rs3761959-A	0.45	1E-8		1.09	[1.06-1.13]	Illumina [133816] (imputed)	N
1787	chr1	157669277	157669278	rs3761959	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	1q23.1	FCRL3	rs3761959-A	0.40	2E-13		1.23	[1.17-1.30]	Illumina [486049]	N
1787	chr1	157669277	157669278	rs3761959	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q23.1	FCRL3	rs3761959-G	NR	3E-6		1.08	[1.06-1.09]	Illumina [465434]	N
1787	chr1	157670289	157670290	rs945635	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1q23.1		rs945635-G	NR	2E-8		0.122196	[0.08-0.165] unit decrease	NR [5054572] (imputed)	N
1787	chr1	157670756	157670757	rs11264799	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	1q23.1	FCRL3	rs11264799-C	0.775	2E-7		1.135	[1.082-1.191]	Illumina [3792949] (imputed)	N
1787	chr1	157670815	157670816	rs7528684	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	FCRL3	rs7528684-G	0.465	1E-112	(Fc receptor-like protein 3, FCRL3.4440.15.2)	0.53	[0.49-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1787	chr1	157670815	157670816	rs7528684	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Insulinoma-associated antigen 2 autoantibody levels in type 1 diabetes	2,498 European ancestry cases	3,897 sibling cases	1q23.1	FCRL3	rs7528684-T	NR	8E-9		1.45		Affymetrix, Illumina [NR]	N
1787	chr1	157674996	157674997	rs2317230	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.1	NR	rs2317230-T	0.392	5E-10	(conditional)	1.102	[1.07-1.13]	Illumina [11270530] (imputed)	N
1787	chr1	157674996	157674997	rs2317230	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	1q23.1		rs2317230-T	0.400867799	2E-9		1.2149632	[1.140628053-1.294142861]	Illumina [8919992] (imputed)	N
1787	chr1	157674996	157674997	rs2317230	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q23.1	FCRL3	rs2317230-T	NR	1E-8		0.0769059	[0.051-0.103] unit increase	Illumina [8380626] (imputed)	N
1787	chr1	157674996	157674997	rs2317230	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.1	FCRL3	rs2317230-T	0.42	2E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1788	chr1	157686336	157686337	rs2317231	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q23.1	FCRL3	rs2317231-G	NR	3E-16		1.0804	NR	Affymetrix, Illumina [8278136] (imputed)	N
1788	chr1	157693721	157693722	rs1977710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q23.1		rs1977710-G	0.396989821	2E-11		0.19161403	[0.14-0.25] unit increase	Illumina [13429311] (imputed)	N
1788	chr1	157693721	157693722	rs1977710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q23.1		rs1977710-G	NR	5E-11		0.1461	[0.1-0.19] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1788	chr1	157705724	157705725	rs6427397	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Akkermansia muciniphila B abundance in stool	5,959 Finnish ancestry individuals	NA	1q23.1		rs6427397-T	0.390564	7E-9		0.112636	[0.074-0.151] unit increase	Illumina [7980478] (imputed)	N
1788	chr1	157708334	157708335	rs58215884	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	smoking initiation in schizophrenia	5,255 European ancestry individuals	1,802 East Asian individuals	1q23.1	FCRL2	rs58215884-?	NR	7E-7				NR [9500000] (imputed)	N
1788	chr1	157748563	157748564	rs6427401	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	FCRL1	rs6427401-G	0.446875	3E-30	(FCRL1, 5728_60_3)	0.28259385	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1788	chr1	157753572	157753573	rs2065883	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	1q23.1	FCRL2	rs2065883-G	0.1636	4E-21	(FcRL2)	0.65791	[0.52-0.79] unit increase	Illumina [8683751] (imputed)	N
1788	chr1	157770240	157770241	rs2050568	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q23.1	FCRL1	rs2050568-G	0.54	2E-10		1.08		Illumina [161311]	N
1788	chr1	157779181	157779182	rs4971155	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	FCRL1	rs4971155-A	0.506	6E-26	(Fc receptor-like protein 1, FCRL1.5728.60.3)	0.26	[0.22-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1788	chr1	157782518	157782519	rs77346326	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	1q23.1	NR	rs77346326-T	0.0203	1E-6		136.0	[81-191] unit increase	NR [9714326] (imputed)	N
1788	chr1	157792301	157792302	rs2777817	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCRL1	5,356 Icelandic ancestry individuals	NA	1q23.1		rs2777817-T	0.4776	5E-59		0.296319	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1788	chr1	157797999	157798000	rs2765493	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		1q23.1	CR1L	rs2765493-A	0.509	4E-6		0.374	[0.22-0.53] unit decrease	Illumina [640625] (imputed)	N
1788	chr1	157798922	157798923	rs2765496	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs2765496-G	0.5490625	7E-16	(FCRL1, 5728_60_3)	0.19886993	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1788	chr1	157798922	157798923	rs2765496	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs2765496-G	0.5490625	3E-55	(FCRL4, 8973_23_3)	0.38020188	[0.33-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1788	chr1	157798922	157798923	rs2765496	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs2765496-G	0.5490625	2E-82	(FCRL3, 4440_15_2)	0.471012	[0.42-0.52] unit increase	Illumina [> 1000000] (imputed)	N
1788	chr1	157798922	157798923	rs2765496	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.1	NR	rs2765496-G	0.5490625	2E-12	(CD5L, 3293_2_4)	0.17713095	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1788	chr1	157804647	157804648	rs2765501	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CD5L plasma levels	400 French ancestry individuals	NA	1q23.1		rs2765501-G	NR	2E-8		0.121	[0.074-0.168] ng/mL increase	Illumina [5201092] (imputed)	N
1788	chr1	157804647	157804648	rs2765501	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD5L	5,355 Icelandic ancestry individuals	NA	1q23.1		rs2765501-A	0.4519	2E-24		0.184597	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
1789	chr1	157839753	157839754	rs114458961	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q23.1	NR	rs114458961-?	NR	3E-8				Illumina [7760689] (imputed)	N
1790	chr1	157954449	157954450	rs111902980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.1		rs111902980-A	0.01937	5E-8		0.4732	[0.3-0.64] unit increase	Illumina [18332267] (imputed)	N
1790	chr1	157954449	157954450	rs111902980	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %CD4-CD8- T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.1		rs111902980-A	0.01933	3E-8		0.5134	[0.33-0.69] unit increase	Illumina [18349913] (imputed)	N
1790	chr1	158038597	158038598	rs34536198	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q23.1	NR	rs34536198-G		5E-15		0.1	[0.08-0.12] unit increase	NR [NR]	N
1790	chr1	158039424	158039425	rs17420551	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q23.1	RRNAD1, MRPL24, HDGF, ETV3L, KIRREL	rs17420551-?		7E-38				Affymetrix, Illumina [NR] (imputed)	N
1790	chr1	158040192	158040193	rs7547764	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1q23.1	NR	rs7547764-?	NR	6E-7		0.107984	[0.066-0.15] unit increase	NR [13958389] (imputed)	N
1790	chr1	158053023	158053024	rs11802995	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q23.1	KIRREL	rs11802995-A	0.7592	6E-10		6.203	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1790	chr1	158055474	158055475	rs76537384	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	White blood cell count	6,007 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	1q23.1		rs76537384-C	0.024	3E-8		0.34	[0.22-0.46] unit decrease	Illumina [7880617]	N
1790	chr1	158058108	158058109	rs6427419	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.1	KIRREL	rs6427419-C	0.353	8E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
1790	chr1	158067046	158067047	rs874844	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs874844-A	0.5085	6E-6		0.051	[0.029-0.073] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr1	158067046	158067047	rs874844	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs874844-A	0.12	9E-73		0.4365	[0.39-0.48] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr1	158067046	158067047	rs874844	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs874844-A	0.1199	4E-19		0.2148	[0.17-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr1	158068343	158068344	rs3820677	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs3820677-A	0.5093	5E-9		0.0563	[0.037-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1790	chr1	158068343	158068344	rs3820677	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs3820677-A	0.1268	1E-121		0.3818	[0.35-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1791	chr1	158082327	158082328	rs11809289	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	White blood cell count	6,007 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	1q23.1		rs11809289-G	0.13	7E-10		0.17	[0.11-0.23] unit decrease	Illumina [7880617]	N
1791	chr1	158091416	158091417	rs12068986	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	1q23.1	intergenic	rs12068986-?	NR	4E-7	(Alpha peak frequency, occipital	0.084	[0.053-0.115] unit decrease	Illumina [527829]	N
1791	chr1	158133060	158133061	rs12097784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.1		rs12097784-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1791	chr1	158171294	158171295	rs411088	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs411088-T	0.3193	3E-12		0.0859	[0.062-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1791	chr1	158171294	158171295	rs411088	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs411088-T	0.6396	6E-57		0.261	[0.23-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1791	chr1	158171294	158171295	rs411088	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.1		rs411088-T	0.313	4E-15		0.0822	[0.062-0.103] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1791	chr1	158171294	158171295	rs411088	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.1		rs411088-T	0.6305	8E-94		0.231	[0.21-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1792	chr1	158224058	158224059	rs16840041	31295725	Wang ZT	2019-07-11	Aging (Albany NY)	Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders.	Change in neurofilament light levels	545 European ancestry individuals	NA	1q23.1	CD1A	rs16840041-A	0.06	5E-8		1.042	[NR] unit increase	Illumina [1231747]	N
1793	chr1	158338905	158338906	rs11801558	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.1	NR	rs11801558-?	NR	3E-7				Affymetrix [NR]	N
1793	chr1	158341272	158341273	rs7547997	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1q23.1	CD1E, ORT10T2, SPTA1	rs7547997-A	0.33	8E-9		0.44	[0.28-0.6] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1793	chr1	158341272	158341273	rs7547997	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	1q23.1	CD1E, ORT10T2, SPTA1	rs7547997-A	0.16	1E-6	(European)	0.48	[0.46-0.5] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1793	chr1	158361317	158361318	rs75958048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs75958048-T	NR	4E-11		0.0397	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1793	chr1	158365696	158365697	rs12405213	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.1	NR	rs12405213-?	NR	3E-26				Affymetrix [NR]	N
1793	chr1	158384565	158384566	rs369186418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q23.1		rs369186418-T	0.00600699999999999	1E-12		0.105121136	[0.076-0.134] unit increase	Affymetrix [93095623] (imputed)	N
1793	chr1	158384565	158384566	rs369186418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q23.1		rs369186418-T	0.00600800000000001	5E-15		0.11640139	[0.087-0.146] unit increase	Affymetrix [93095623] (imputed)	N
1793	chr1	158384565	158384566	rs369186418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q23.1	intergenic	rs369186418-T	0.0071	7E-12		0.1518953	[0.11-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1793	chr1	158427207	158427208	rs555280966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.1		rs555280966-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1793	chr1	158460759	158460760	rs76737850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs76737850-G	NR	2E-13		0.062	[0.046-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1794	chr1	158493054	158493055	rs11265005	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q23.1	NR	rs11265005-?		6E-7				Illumina [4322238] (imputed)	N
1794	chr1	158512618	158512619	rs11265022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q23.1	NR	rs11265022-A	NR	8E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1794	chr1	158517141	158517142	rs41273491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.1	NR	rs41273491-T	NR	5E-31		0.0327	[0.027-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr1	158517141	158517142	rs41273491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs41273491-T	NR	4E-152		0.0758	[0.07-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1794	chr1	158517141	158517142	rs41273491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	1q23.1	NR	rs41273491-T	NR	1E-14		0.0236	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr1	158518049	158518050	rs61820494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs61820494-G	NR	4E-13		0.0274	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr1	158521489	158521490	rs189857927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q23.1	OR6Y1	rs189857927-G	0.012939	4E-19		0.09157325	[0.072-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158530415	158530416	rs12045893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q23.1	OR6P1	rs12045893-T	0.247231	3E-11		0.016927958	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158534981	158534982	rs863345	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls		OR6P1	rs863345-?	NR	1E-6		1.55	[NR]	Affymetrix [up to 10996499] (imputed)	N
1794	chr1	158541234	158541235	rs61820496	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1		rs61820496-A	0.0544090000000001	3E-9		0.0581529	[0.049-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158545253	158545254	rs770222963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q23.1	OR10X1	rs770222963-G	5.64000000000009E-4	1E-35		0.67005306	[0.56-0.78] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158545253	158545254	rs770222963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	OR10X1	rs770222963-G	5.65999999999955E-4	4E-61		0.87668437	[0.77-0.98] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158545253	158545254	rs770222963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	OR10X1	rs770222963-G	5.61999999999951E-4	2E-25		0.5607408	[0.46-0.67] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158545253	158545254	rs770222963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q23.1	OR10X1	rs770222963-G	5.65000000000038E-4	5E-22		0.51688445	[0.41-0.62] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158551236	158551237	rs863364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs863364-A	NR	3E-9		0.0403	[0.027-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1794	chr1	158565032	158565033	rs857708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	1q23.1		rs857708-G	0.401842	1E-8		0.0258312	[0.017-0.035] unit increase	Illumina [13471431] (imputed)	N
1794	chr1	158574786	158574788	rs10550106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	OR10Z1	rs10550106-G	0.552125	2E-16		0.054330494	[0.041-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158574786	158574788	rs10550106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	OR10Z1	rs10550106-G	0.552217	8E-11		0.043268126	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158575728	158575729	rs857684	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	1q23.1	NR	rs857684-?	NR	2E-12				NR [2500000] (imputed)	N
1794	chr1	158575728	158575729	rs857684	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	1q23.1	NR	rs857684-?	NR	1E-8				NR [2500000] (imputed)	N
1794	chr1	158575728	158575729	rs857684	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q23.1	OR10Z1, OR6Y1, SPTA1	rs857684-C	0.74	4E-16	(EA, MCHC)	0.006	[-0.01556-0.02756] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1794	chr1	158576099	158576100	rs860772	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q23.1	OR10Z1	rs860772-C	0.2564	2E-9		0.02442757	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158578864	158578865	rs12724903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.1	NR	rs12724903-C	NR	4E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr1	158578864	158578865	rs12724903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs12724903-C	NR	2E-42		0.0648	[0.055-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1794	chr1	158578919	158578920	rs12083184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q23.1	SPTA1, OR10Z1	rs12083184-C	0.2822	6E-29		0.04359592	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158580068	158580069	rs2479868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q23.1		rs2479868-T	NR	9E-15		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1794	chr1	158580068	158580069	rs2479868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q23.1		rs2479868-T	NR	6E-40		0.0306	[0.026-0.035] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1794	chr1	158580068	158580069	rs2479868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q23.1	SPTA1, OR10Z1	rs2479868-T	0.265822	2E-13		0.018193426	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158580476	158580477	rs12128171	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q23.1		rs12128171-A	0.719	3E-48		0.18	[0.15-0.2] % increase	Affymetrix [NR] (imputed)	N
1794	chr1	158581509	158581510	rs57511663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q23.1	NR	rs57511663-C	0.281607	6E-112		0.04504	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1794	chr1	158582425	158582426	rs2518489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs2518489-A	0.289615	1E-25				Affymetrix, Illumina [24332387] (imputed)	N
1794	chr1	158582542	158582543	rs2251963	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q23.1	SPTA1	rs2251963-A	0.2618	3E-9		0.02396347	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	1q23.1		rs2157691-C	0.2654	1E-9		0.1024	[0.069-0.135] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	1q23.1		rs2157691-C	0.2725	4E-13		0.078	[0.057-0.099] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.1	SPTA1	rs2157691-C	0.265688	3E-17		0.02109756	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs2157691-C	0.265815	4E-59		0.10747683	[0.094-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.1	SPTA1	rs2157691-C	0.265684	3E-18		0.021777662	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.1	SPTA1	rs2157691-C	0.265684	8E-42		0.03376146	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs2157691-C	0.278912	5E-46				Affymetrix, Illumina [23472807] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q23.1	NR	rs2157691-C	0.265823	1E-44		0.029828	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1794	chr1	158582837	158582838	rs2157691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q23.1	SPTA1	rs2157691-C	0.2659	9E-16		0.03268005	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	2E-37		0.438911	[0.37-0.51] unit increase	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	1E-55		0.514401	[0.45-0.58] unit decrease	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	1E-26		0.360139	[0.29-0.43] unit decrease	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	2E-24		0.347564	[0.28-0.42] unit increase	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	1E-45		0.476078	[0.41-0.54] unit decrease	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	1q23.1		rs201514157-?	NR	3E-9		0.187148	[0.12-0.25] unit increase	NR [9800000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs201514157-A	NR	1E-26		0.4654	[0.38-0.55] unit decrease	Affymetrix [9000000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs201514157-A	7.49E-4	3E-37		0.540647	[0.46-0.62] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1	SPTA1	rs201514157-A	7.53000000000004E-4	2E-19		0.367189	[0.29-0.45] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs201514157-A	7.51999999999975E-4	6E-22		0.40626583	[0.32-0.49] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q23.1	SPTA1	rs201514157-A	7.0E-4	5E-16		0.6033977	[0.46-0.75] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q23.1	SPTA1	rs201514157-A	7.0E-4	2E-16		0.6125014	[0.47-0.76] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q23.1	SPTA1	rs201514157-A	7.0E-4	3E-10		0.4671173	[0.32-0.61] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158583603	158583604	rs201514157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q23.1	SPTA1	rs201514157-A	7.0E-4	2E-10		0.4757698	[0.33-0.62] unit increase	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158584674	158584675	rs2518490	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q23.1		rs2518490-A	0.734	7E-15				Affymetrix [10369434] (imputed)	N
1794	chr1	158584674	158584675	rs2518490	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1q23.1		rs2518490-A	0.734	2E-19				Affymetrix [10369434] (imputed)	N
1794	chr1	158585229	158585230	rs2518491	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q23.1	SPTA1	rs2518491-T	0.2659	4E-11		0.02651297	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158585414	158585415	rs2779116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	1q23.1		rs2779116-T	0.381047	6E-9		0.0251415	[0.017-0.034] unit increase	Illumina [13466143] (imputed)	N
1794	chr1	158585414	158585415	rs2779116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q23.1	SPTA1	rs2779116-T	0.265843	5E-37		0.032051127	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158585414	158585415	rs2779116	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	1q23.1	NR	rs2779116-?	NR	3E-6		0.0674557	[0.039-0.096] unit increase	Illumina [22871999] (imputed)	N
1794	chr1	158585414	158585415	rs2779116	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	1q23.1	SPTA1	rs2779116-T	0.27	3E-9		0.02	[0.01-0.03] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1794	chr1	158586276	158586277	rs2852635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q23.1		rs2852635-A	NR	1E-209		0.0802	[0.075-0.085] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1794	chr1	158586276	158586277	rs2852635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs2852635-G	0.739444	1E-103				Affymetrix, Illumina [22063850] (imputed)	N
1794	chr1	158586276	158586277	rs2852635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q23.1	NR	rs2852635-G	0.734439	8E-105		0.047627	[0.043-0.052] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q23.1		rs2022003-T	NR	1E-38		0.0278	[0.024-0.032] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	1q23.1		rs2022003-T	0.380481	1E-8		0.0220533	[0.014-0.03] unit decrease	Illumina [13476323] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q23.1		rs2022003-T	NR	2E-67		0.0372	[0.033-0.041] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q23.1		rs2022003-T	NR	6E-118		0.0496	[0.045-0.054] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	1q23.1		rs2022003-T	0.380049	1E-17		0.0316708	[0.024-0.039] unit decrease	Illumina [13477028] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	1q23.1	SPTA1	rs2022003-?	NR	1E-22		1.7	NR unit increase	NR [14100000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	1q23.1	SPTA1	rs2022003-?	NR	5E-8				NR [14100000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278628	2E-15		0.01947941	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278574	3E-351		0.10043947	[0.096-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.27856	3E-300		0.09810348	[0.093-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278599	3E-46		0.037649732	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278584	4E-19		0.02213195	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278602	8E-14		0.018340243	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278563	5E-11		0.016259415	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278606	4E-124		0.0783487	[0.074-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278629	9E-149		0.06429208	[0.059-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs2022003-T	0.278616	2E-119		0.06123981	[0.056-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q23.1	NR	rs2022003-T	0.279877	2E-23		0.020386	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs2022003-T	0.298723	2E-236				Affymetrix, Illumina [21126107] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q23.1	NR	rs2022003-T	0.279457	4E-218		0.070178	[0.066-0.075] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	1q23.1	NR	rs2022003-A	0.618797	5E-18		0.035531	[0.027-0.044] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q23.1	NR	rs2022003-T	0.279992	2E-16		0.016847	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q23.1		rs2022003-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.1		rs2022003-?	NR	1E-97				NR [~ 8900000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	NR	6E-25		0.0438695	[0.035-0.053] unit increase	Affymetrix [16832071] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	0.2785	1E-151		0.1045314	[0.097-0.112] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	0.2785	2E-159		0.1072855	[0.099-0.115] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	0.2785	2E-52		0.05869167	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	0.2785	7E-58		0.06384646	[0.056-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q23.1	SPTA1	rs2022003-T	0.2784	1E-62		0.06655619	[0.059-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158586965	158586966	rs2022003	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q23.1	SPTA1, OR10Z1, OR10X1, OR6P1	rs2022003-T	NR	6E-6	(sleep duration)	0.2353	[0.13-0.34] unit increase	Affymetrix [7141204] (imputed)	N
1794	chr1	158588145	158588146	rs73016289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.1		rs73016289-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1794	chr1	158590983	158590983	rs11396934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs11396934-AT	0.279802	2E-46		0.097453974	[0.084-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158590983	158590983	rs11396934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	SPTA1	rs11396934-AT	0.279888	1E-41		0.09332412	[0.08-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158590983	158590983	rs11396934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs11396934-AT	0.279924	1E-52		0.0472272	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158591730	158591731	rs6427440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q23.1		rs6427440-A	NR	2E-19		0.0201	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1794	chr1	158591730	158591731	rs6427440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q23.1	SPTA1	rs6427440-A	0.293265	8E-25		0.024853446	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1794	chr1	158591730	158591731	rs6427440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q23.1		rs6427440-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1794	chr1	158595841	158595842	rs11265038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1	SPTA1	rs11265038-A	0.279803	7E-16		0.0417365	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158595841	158595842	rs11265038	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q23.1	SPTA1	rs11265038-A	NR	2E-9		0.0267283	[0.017-0.036] unit decrease	Affymetrix [16832071] (imputed)	N
1794	chr1	158595841	158595842	rs11265038	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q23.1	SPTA1	rs11265038-A	0.2789	3E-23		0.03913427	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1794	chr1	158596437	158596438	rs2482963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	SPTA1	rs2482963-T	0.265645	2E-38		0.086950675	[0.074-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr1	158596437	158596438	rs2482963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	1q23.1	SPTA1	rs2482963-?	NR	1E-14		0.03376	[0.025-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1794	chr1	158596523	158596524	rs12088990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs12088990-G	0.26848	1E-121				Affymetrix, Illumina [24246363] (imputed)	N
1795	chr1	158597506	158597507	rs3737515	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q23.1	NR	rs3737515-?	NR	7E-6				NR [2500000] (imputed)	N
1795	chr1	158597741	158597742	rs3737516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q23.1	SPTA1	rs3737516-C	0.292767	2E-33		0.031313084	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158599636	158599637	rs11265039	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1q23.1	NR	rs11265039-G	0.77364	2E-13		0.035896	[0.026-0.045] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1795	chr1	158604142	158604143	rs11811522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs11811522-A	0.284747	1E-29				Affymetrix, Illumina [20825802] (imputed)	N
1795	chr1	158604142	158604143	rs11811522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q23.1	NR	rs11811522-A	0.293966	1E-29		0.023812	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1795	chr1	158604142	158604143	rs11811522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q23.1	SPTA1	rs11811522-A	0.2942	4E-10		0.02422992	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158607934	158607935	rs857725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q23.1		rs857725-G	NR	3E-9		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1795	chr1	158607934	158607935	rs857725	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1q23.1	SPTA1	rs857725-T	0.7281	5E-55		0.0208	[0.018-0.024] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1795	chr1	158607934	158607935	rs857725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs857725-G	0.287376	7E-17				Affymetrix, Illumina [24653286] (imputed)	N
1795	chr1	158607934	158607935	rs857725	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q23.1	SPTA1	rs857725-G		3E-11		0.016	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1795	chr1	158612547	158612548	rs857721	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	1q23.1	OR10Z1	rs857721-?	NR	6E-12		0.0536	NR L decrease	Affymetrix [9390170] (imputed)	N
1795	chr1	158612547	158612548	rs857721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.1	NR	rs857721-A	NR	1E-36		0.0343	[0.029-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1795	chr1	158612547	158612548	rs857721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs857721-A	NR	3E-194		0.0822	[0.077-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1795	chr1	158612547	158612548	rs857721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	1q23.1	NR	rs857721-A	NR	1E-18		0.0259	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1795	chr1	158612547	158612548	rs857721	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Other erythrocyte phenotypes	24,167 European ancestry individuals	9,456 European ancestry individuals	1q23.1	SPTA1	rs857721-A	NR	1E-10	(MCHC)	0.0	[0.001-0.002] g/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs200830867-A	NR	1E-19		0.1186	[0.093-0.144] unit decrease	Affymetrix [9000000] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs200830867-A	0.00907400000000003	3E-24		0.11912418	[0.096-0.142] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs200830867-A	0.009077	4E-26		0.12408491	[0.1-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs200830867-A	0.00906099999999999	6E-56		0.1833667	[0.16-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	SPTA1	rs200830867-A	0.00909400000000005	7E-61		0.19308457	[0.17-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158613313	158613314	rs200830867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1	SPTA1	rs200830867-A	0.0091	4E-12		0.129457	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158614197	158614198	rs6702040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs6702040-T	0.292466	8E-12		0.017823616	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158614197	158614198	rs6702040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs6702040-T	0.292387	2E-10		0.016574588	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158615701	158615702	rs857676	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	1q23.1	SPTA1	rs857676-A	0.6294	8E-12		0.0198	[0.014-0.025] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1795	chr1	158615701	158615702	rs857676	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	1q23.1	SPTA1	rs857676-A	0.5922	3E-6		0.0212	[0.013-0.03] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
1795	chr1	158618454	158618455	rs2246434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q23.1		rs2246434-A	0.328076	6E-16		0.0308287	[0.023-0.038] unit increase	Illumina [13476266] (imputed)	N
1795	chr1	158618454	158618455	rs2246434	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1q23.1	SPTA1	rs2246434-?	NR	9E-11		0.02928	[0.02-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1795	chr1	158619821	158619822	rs857689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs857689-C	0.253253	2E-28		0.0443553	[0.04-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158619821	158619822	rs857689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.1	NR	rs857689-A	0.736776	9E-15				Affymetrix, Illumina [17210439] (imputed)	N
1795	chr1	158620476	158620477	rs861409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q23.1	NR	rs861409-C	0.746704	5E-15		0.017226	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1795	chr1	158620476	158620477	rs861409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q23.1	SPTA1	rs861409-G	0.2543	7E-23		0.04036671	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158626377	158626378	rs857691	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Hemoglobin A1c levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	1q23.1	SPTA1	rs857691-T	0.25	6E-6	(EA)	0.044	[0.024-0.064] unit increase	Affymetrix [NR] (imputed)	N
1795	chr1	158626377	158626378	rs857691	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	1q23.1	SPTA1	rs857691-T	0.2715	4E-25		0.0193	[0.016-0.023] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1795	chr1	158628347	158628348	rs78665015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs78665015-G	0.108239	5E-9		0.021266961	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158637727	158637728	rs148912436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs148912436-C	NR	1E-10		0.0753	[0.053-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1795	chr1	158637727	158637728	rs148912436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q23.1	SPTA1	rs148912436-C	0.011651	1E-11		0.070154704	[0.05-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158637727	158637728	rs148912436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q23.1	SPTA1	rs148912436-C	0.011671	2E-26		0.119524	[0.1-0.139] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158637727	158637728	rs148912436	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q23.1	SPTA1	rs148912436-C	0.0115	8E-19		0.1468219	[0.11-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.01159	6E-124		0.24648286	[0.23-0.27] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011593	3E-131		0.25461417	[0.23-0.28] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011584	2E-295		0.37973323	[0.36-0.4] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.01155	2E-139		0.2628512	[0.24-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011556	3E-65		0.173375	[0.15-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011553	1E-25		0.108220614	[0.088-0.128] unit decrease	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011581	6E-79		0.19514225	[0.17-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q23.1	SPTA1	rs140446749-A	0.011584	7E-88		0.20700464	[0.19-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q23.1		rs140446749-?	NR	6E-25				NR [~ 8900000] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q23.1	SPTA1	rs140446749-A	0.0115	3E-47		0.2438309	[0.21-0.28] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q23.1	SPTA1	rs140446749-A	0.0115	3E-50		0.2517826	[0.22-0.28] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q23.1	SPTA1	rs140446749-A	0.0115	4E-28		0.1855444	[0.15-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158638259	158638260	rs140446749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q23.1	SPTA1	rs140446749-A	0.0115	3E-30		0.1926948	[0.16-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
1795	chr1	158650031	158650032	rs182146514	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SPTA1	rs182146514-?	NR	6E-11	(female)	0.56764	[NR] unit increase	Affymetrix [NR] (imputed)	N
1795	chr1	158664482	158664483	rs34542525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs34542525-G	NR	2E-19		0.0623	[0.049-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1795	chr1	158694207	158694208	rs703143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs703143-A	NR	5E-46		0.0359	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1795	chr1	158701448	158701449	rs1930261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q23.1	NR	rs1930261-G	NR	3E-11		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1795	chr1	158702153	158702154	rs75391812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.1		rs75391812-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1795	chr1	158710458	158710459	rs12073018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.1	NR	rs12073018-T	0.02091	2E-8	(ACSM2A)	0.2281	NR unit increase	Illumina [1671387] (imputed)	N
1796	chr1	158728388	158728389	rs10489844	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.1	NR	rs10489844-C	0.9366	2E-25		0.0572	[0.046-0.068] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1796	chr1	158733766	158733766	rs201581084	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	1q23.1	NR	rs201581084-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.44	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1796	chr1	158744059	158744060	rs2325694	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	1q23.1	NR	rs2325694-A	0.0322	2E-6	(Trans/trans-18:2, EA)	0.0056	[0.0032-0.008] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1796	chr1	158744230	158744231	rs2325695	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	1q23.1	NR	rs2325695-A	0.9679	2E-6	(Trans/trans-18:2, EA)	0.0056	[0.0032-0.008] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1796	chr1	158785093	158785094	rs857786	34302048	Qu HQ	2021-07-23	Commun Biol	Genetic architecture of type 1 diabetes with low genetic risk score informed by 41 unreported loci.	Type 1 diabetes with low genetic risk score	957 European ancestry cases, 12,323 European ancestry controls	NA	1q23.1	NR	rs857786-T	NR	6E-9		1.322	[1.203-1.452]	Illumina [104689647] (imputed)	N
1796	chr1	158845570	158845571	rs72702969	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of aspartame	1,757 European ancestry twins	NA	1q23.1	MNDA	rs72702969-T	0.11	3E-6		0.27	[0.15-0.39] unit increase	Illumina [4381914] (imputed)	N
1797	chr1	158872480	158872484	rs200154182	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.1	NR	rs200154182-TTTTC		3E-8		0.0965	[0.062-0.131] SD units decrease	NR [10700000] (imputed)	N
1797	chr1	158893431	158893432	rs11805756	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q23.1	MNDA	rs11805756-?	NR	5E-6	(DAG 34:1)	0.25622725	[0.15-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1797	chr1	158932554	158932555	rs1101999	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	1q23.1	PYHIN1	rs1101999-?	NR	4E-9				Affymetrix, Illumina [> 2000000] (imputed)	N
1797	chr1	158949429	158949430	rs856134	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.1	NR	rs856134-?	NR	1E-7				Affymetrix [NR]	N
1797	chr1	158971085	158971086	rs4657616	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.1	NR	rs4657616-?	NR	2E-44		0.03922291	[0.034-0.045] unit increase	Illumina [30613845] (imputed)	N
1797	chr1	158971085	158971086	rs4657616	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	1q23.1	DARC	rs4657616-G	0.099	5E-47	(AA, WBC)	0.0612	[0.053-0.07] unit increase	Illumina [544917]	N
1797	chr1	158978935	158978936	rs3754464	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	1q23.1		rs3754464-?	NR	2E-6	(serous)	1.29		Illumina [11595112] (imputed)	N
1797	chr1	158982476	158982477	rs12727764	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.1	NR	rs12727764-G		5E-6		0.0971	[0.055-0.139] SD units decrease	NR [10700000] (imputed)	N
1797	chr1	158983592	158983593	rs856066	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1q23.1	NR	rs856066-?	NR	1E-17				Affymetrix, Illumina [6210527] (imputed)	N
1797	chr1	158987940	158987941	rs856046	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.1	NR	rs856046-A	0.8437	5E-49		0.0574	[0.05-0.065] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1798	chr1	159002221	159002222	rs861318	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.1	MNDA, AIM2, IFI16	rs861318-A	0.12	1E-6	(Diet carbohydrate )	0.04	[NR] g/d increase	Illumina [899892]	N
1798	chr1	159004850	159004851	rs72709516	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.1	IFI16	rs72709516-T	0.044	3E-49	(Gamma-interferon-inducible protein 16, IFI16.12893.159.3)	0.85	[0.73-0.97] unit increase	Affymetrix [10572788] (imputed)	N
1798	chr1	159005648	159005649	rs1772408	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	1q23.1	IFI16	rs1772408-?	NR	8E-7				Illumina [472854]	N
1798	chr1	159005976	159005977	rs1633266	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	1q23.1	IFI16	rs1633266-?	NR	3E-8		0.93	[0.6-1.26] unit increase	Affymetrix [2135235] (imputed)	N
1798	chr1	159010219	159010220	rs1633267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.1	IFI16	rs1633267-G	0.865317	3E-10		0.020499768	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1798	chr1	159010219	159010220	rs1633267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.1	IFI16	rs1633267-G	0.865304	2E-12		0.022903346	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1798	chr1	159012645	159012646	rs2570916	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Neutrophil count in HIV-infection	2,547 individuals	NA	1q23.1	PYHIN1, IFI16, AIM2	rs2570916-?	0.4191	3E-6		0.041722316	[NR] unit decrease	Illumina [5954294] (imputed)	N
1798	chr1	159019453	159019454	rs115888957	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	1q23.1	NR	rs115888957-C	0.9772	5E-9		2.5568	[1.7-3.41] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
1798	chr1	159032701	159032702	rs80297331	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.1	NR	rs80297331-T	0.02439	2E-8	(ALDH16A1)	0.02159	NR unit increase	Illumina [1671387] (imputed)	N
1798	chr1	159043195	159043196	rs2276405	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1q23.1	AIM2	rs2276405-?		3E-9		1.2048193	[1.11-1.25]	Illumina [87827]	N
1798	chr1	159062435	159062436	rs2518564	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.1	NR	rs2518564-?	NR	1E-130		0.07259985	[0.067-0.078] unit increase	Illumina [30613845] (imputed)	N
1798	chr1	159062435	159062436	rs2518564	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	1q23.1	DARC	rs2518564-A	0.1725	1E-149	(AA)	0.1905	[0.18-0.20] unit increase	Illumina [NR] (imputed)	N
1798	chr1	159062435	159062436	rs2518564	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	1q23.1	DARC	rs2518564-?	NR	7E-69		0.0365	[0.032-0.041] unit increase	Illumina [NR] (imputed)	N
1799	chr1	159132648	159132649	rs12042284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs12042284-C	NR	6E-13		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1799	chr1	159138466	159138467	rs3026947	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.2	NR	rs3026947-?	NR	4E-7				Affymetrix [NR]	N
1799	chr1	159144580	159144581	rs2249581	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1q23.2	NR	rs2249581-T	0.276342	2E-8		0.044070978	[0.029-0.059] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1799	chr1	159146936	159146937	rs2249872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q23.2		rs2249872-A	0.7433	1E-16	(conditional-joint)	0.0133	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1799	chr1	159147451	159147452	rs3026968	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	1q23.2	CADM3	rs3026968-T	0.12	9E-14	(MCP-1)			Affymetrix [~ 1900000] (imputed)	N
1799	chr1	159148512	159148513	rs1474747	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	IGSF4B	rs1474747-?	NR	3E-6	(MCP1)			Affymetrix [70897]	N
1799	chr1	159151320	159151320	rs776871909	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q23.2	CADM3	rs776871909-CT	0.73308	5E-10		1.0430231	[1.02923910611759-1.05699182830947]	NR [9572556] (imputed)	N
1799	chr1	159154311	159154312	rs16841832	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	1q23.2	CADM3	rs16841832-G	0.76	9E-6		2.0	[NR]	Affymetrix [703012]	N
1799	chr1	159156295	159156296	rs2253837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q23.2	Intergenic	rs2253837-C	0.7451	2E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1799	chr1	159156295	159156296	rs2253837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q23.2	Intergenic	rs2253837-T	0.2542	5E-22	(MTAG)	0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1799	chr1	159156295	159156296	rs2253837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q23.2	Intergenic	rs2253837-C	0.7458	6E-13		0.0187	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1799	chr1	159165335	159165336	rs862994	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs862994-A	NR	2E-39		0.0353	[0.03-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1799	chr1	159167289	159167290	rs3026996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q23.2		rs3026996-A	0.7606	5E-17		0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1799	chr1	159167289	159167290	rs3026996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q23.2	Intergenic	rs3026996-A	0.7606	1E-19	(MTAG)	0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1799	chr1	159168616	159168617	rs2235780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs2235780-G	NR	3E-24		0.0715	[0.058-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1799	chr1	159169462	159169463	rs3027001	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q23.2	CADM3	rs3027001-C	0.77	5E-9				NR [> 9500000] (imputed)	N
1799	chr1	159169462	159169463	rs3027001	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q23.2	ENSG00000225670	rs3027001-?	NR	2E-8		0.013022569	[0.0085-0.0176] unit decrease	NR [7306098]	N
1799	chr1	159170796	159170797	rs3027003	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs3027003-C	0.975657	1E-41		0.0924246	[0.079-0.106] unit decrease	NR [NR]	N
1799	chr1	159173886	159173887	rs3027009	22744181	Hai R	2012-06-29	Sci China Life Sci	Bivariate genome-wide association study suggests that the DARC gene influences lean body mass and age at menarche.	Lean body mass and age at menarche (combined)	801 Han Chinese ancestry female individuals	1,692 European ancestry female individuals	1q23.2	DARC	rs3027009-?	NR	7E-7	(Bivariate)			Affymetrix [909622]	N
1799	chr1	159174076	159174077	rs41264467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.2	DARC	rs41264467-A	0.010774	6E-11		0.07287043	[0.051-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174076	159174077	rs41264467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs41264467-A	0.010762	2E-10		0.07050807	[0.049-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174076	159174077	rs41264467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.2	DARC	rs41264467-A	0.010769	2E-16		0.09170908	[0.07-0.114] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174076	159174077	rs41264467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs41264467-A	0.010756	6E-11		0.07333051	[0.051-0.095] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs2814778-T	0.1893	2E-83		0.0658	[0.059-0.072] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	1q23.2	NR	rs2814778-T	0.1884	8E-12		1.2448	[0.89-1.6] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs2814778-T	0.1674	2E-54		0.2208	[0.19-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.2		rs2814778-T	0.7934	8E-216		0.5674	[0.53-0.6] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs2814778-T	0.167	8E-17		0.1178	[0.09-0.145] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.2		rs2814778-T	0.7924	1E-42		0.2539	[0.22-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs2814778-T	0.1628	1E-71		0.2208	[0.2-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Granulocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.2		rs2814778-C	0.02518	1E-8		0.4501	[0.3-0.6] unit decrease	Illumina [18427377] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.2	DARC	rs2814778-C	0.00201300000000004	1E-34		0.29911593	[0.25-0.35] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs2814778-C	0.00201300000000004	3E-26		0.25892425	[0.21-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.2	DARC	rs2814778-C	0.00200999999999996	1E-44		0.34225002	[0.29-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.2	DARC	rs2814778-C	0.00201600000000002	2E-10		0.15532911	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs2814778-C	0.00201399999999996	6E-27		0.26304284	[0.22-0.31] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	9,368 Hispanic or Latin American individuals	NA	1q23.2	NR	rs2814778-T	0.876649	1E-42		0.352037	[0.3-0.4] SD units increase	Affymetrix, Illumina [26925380] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.97583	9E-421				Affymetrix, Illumina [24649327] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.241661	2E-339		0.70463	[0.67-0.74] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	7,542 Hispanic or Latin American individuals	NA	1q23.2	NR	rs2814778-T	0.877125	2E-42		0.385331	[0.33-0.44] SD units increase	Affymetrix, Illumina [25652697] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.976761	3E-533				Affymetrix, Illumina [23114412] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.232463	6E-442		0.86226	[0.82-0.9] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.976709	1E-76				Affymetrix, Illumina [23467995] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q23.2	NR	rs2814778-T	0.232417	8E-65		0.324195	[0.29-0.36] SD units increase	Affymetrix, Illumina [36452625] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	1q23.2	NR	rs2814778-C	NR	1E-110	(African)	0.758	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q23.2	NR	rs2814778-?	NR	1E-6		1468.2413	NR unit increase	Illumina [2379855]	N
1799	chr1	159174682	159174683	rs2814778	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	White blood cell count	up to 7,526 African ancestry individuals	NA	1q23.2		rs2814778-T	0.006	7E-57		0.78213	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Neutrophil count	up to 7,526 African ancestry individuals	NA	1q23.2		rs2814778-T	0.006	7E-81		0.905054	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Monocyte count	up to 7,526 African ancestry individuals	NA	1q23.2		rs2814778-T	0.006	3E-12		0.37	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.2	NR	rs2814778-?	NR	1E-250		0.1606582	[0.15-0.17] unit decrease	Illumina [30613845] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	30647433	Legge SE	2019-01-15	Mol Psychiatry	A genome-wide association study in individuals of African ancestry reveals the importance of the Duffy-null genotype in the assessment of clozapine-related neutropenia.	Neutrophil level response to clozapine in treatment-resistant schizophrenia	552 Sub-Saharan African ancestry individuals	NA	1q23.2	ACKR1	rs2814778-C	0.8838	4E-21		0.856	[0.68-1.03] unit decrease	Illumina [~ 13500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count	783 African American individuals with low white blood cell count, 1,214 African American individuals with high white blood cell count	NA	1q23.2	DARC	rs2814778-C	0.792	4E-53		15.63	[15.28-15.98]	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (neutrophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	1q23.2	DARC	rs2814778-T	0.859	6E-65		0.1275	[0.11-0.14] unit increase	Illumina [27887661] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	1q23.2	DARC	rs2814778-T	0.86	8E-18		0.065	[0.049-0.081] unit increase	Illumina [27887661] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	1q23.2	DARC	rs2814778-T	0.859	6E-56		0.1037	[0.091-0.117] unit increase	Illumina [27887661] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	2E-12		0.2950265	[0.21-0.38] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	2E-12		0.2956757	[0.21-0.38] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	2E-11		0.2783955	[0.2-0.36] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	9E-13		0.2990896	[0.22-0.38] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	3E-12		0.2927259	[0.21-0.37] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	2E-10		0.2653401	[0.18-0.35] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q23.2	DARC	rs2814778-C	0.0019	4E-12		0.2915131	[0.21-0.37] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Neutrophil count in HIV-infection	2,547 individuals	NA	1q23.2	MPTX, DARC, CADM3	rs2814778-C	0.31	3E-17		0.11156583	[NR] unit decrease	Illumina [5954294] (imputed)	N
1799	chr1	159174682	159174683	rs2814778	22037903	Crosslin DR	2011-10-30	Hum Genet	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	12,046 European ancestry individuals, 1,487 African ancestry individuals	NA	1q23.2	DARC	rs2814778-A	0.18	7E-55	(AA)	1.35	[1.19-1.51] K/ul increase	Illumina [532566]	N
1799	chr1	159174682	159174683	rs2814778	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	1q23.2	DARC	rs2814778-?	NR	1E-8				Illumina [874956]	N
1799	chr1	159174884	159174885	rs7550207	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.2	NR	rs7550207-?	NR	1E-12		0.02324762	[0.017-0.03] unit increase	Illumina [30613845] (imputed)	N
1799	chr1	159174884	159174885	rs7550207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q23.2	CTA-134P22.2, DARC	rs7550207-C	0.2372	2E-10		0.02686604	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174884	159174885	rs7550207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q23.2	CTA-134P22.2, DARC	rs7550207-C	0.2373	1E-10		0.02708865	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174884	159174885	rs7550207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q23.2	CTA-134P22.2, DARC	rs7550207-C	0.2373	2E-10		0.02679931	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159174884	159174885	rs7550207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q23.2	CTA-134P22.2, DARC	rs7550207-C	0.2372	1E-10		0.02711381	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL8	5,360 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	8E-140		0.438549	[0.4-0.47] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL6	5,354 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	3E-102		0.379707	[0.35-0.41] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL5	5,366 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	8E-42		0.245237	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,366 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	6E-34		0.226488	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL11	5,364 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	5E-26		0.195162	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL1	5,361 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	3E-30		0.203778	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDSN	5,366 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	4E-225		0.558217	[0.52-0.59] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL2	5,365 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	3E-168		0.492103	[0.46-0.53] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	4E-34		0.228835	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL14	5,363 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	7E-52		0.269167	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL11	5,364 Icelandic ancestry individuals	NA	1q23.2		rs12075-G	0.4353	3E-166		0.486586	[0.45-0.52] unit decrease	Illumina [7506463] (imputed)	N
1799	chr1	159175353	159175354	rs12075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q23.2		rs12075-A	NR	6E-22		0.0214	[0.017-0.026] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1799	chr1	159175353	159175354	rs12075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q23.2		rs12075-A	NR	3E-13		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1799	chr1	159175353	159175354	rs12075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q23.2		rs12075-G	0.421	2E-10				Affymetrix [10369434] (imputed)	N
1799	chr1	159175353	159175354	rs12075	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	1q23.2		rs12075-G	0.421	2E-11				Affymetrix [10369434] (imputed)	N
1799	chr1	159175353	159175354	rs12075	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	1q23.2	NR	rs12075-A	NR	1E-134		0.1166	[0.11-0.13] unit increase	Illumina [~ 9000000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	1q23.2		rs12075-A	0.56	2E-22		0.0779	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 6 levels	21,758 European ancestry individuals	9,173 individuals	1q23.2		rs12075-A	0.56	2E-6		0.0463	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579274	4E-24		0.022799145	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579217	4E-25		0.023301968	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579161	1E-13		0.016569486	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.2	DARC	rs12075-G	0.42084	5E-43		0.030826168	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579216	1E-16		0.018632082	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579208	2E-24		0.023083856	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.2	DARC	rs12075-A	0.579184	1E-42		0.03068314	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q23.2	NR	rs12075-A	0.579474	2E-46		0.027028	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.2	NR	rs12075-A	0.515607	1E-39				Affymetrix, Illumina [19905671] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q23.2	NR	rs12075-A	0.579533	6E-41		0.027771	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1799	chr1	159175353	159175354	rs12075	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Monocyte chemoattractant protein-4 levels	982 Scottish ancestry individuals		1q23.2	NR	rs12075-G	0.42037	7E-42		0.6196	[0.53-0.71] unit decrease	Illumina [7903493] (imputed)	N
1799	chr1	159175353	159175354	rs12075	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.2	NR	rs12075-?	NR	1E-28		0.03160937	[0.026-0.037] unit decrease	Illumina [30613845] (imputed)	N
1799	chr1	159175353	159175354	rs12075	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Monocyte chemoattractant protein-1 levels	13,577 Finnish ancestry individuals	NA	1q23.2	ACKR1	rs12075-G	0.561	2E-24		0.125	unit increase	Illumina [NR] (imputed)	N
1799	chr1	159175353	159175354	rs12075	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.584	9E-20	(Eotaxin, CCL11.5301.7.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1799	chr1	159175353	159175354	rs12075	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.584	3E-30	(Corneodesmosin, CDSN.7085.81.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.2	ACKR1	rs12075-G		1E-44		0.2185	[0.19-0.25] SD units decrease	NR [10700000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	1q23.2	NR	rs12075-G		4E-7		0.12	[0.074-0.166] SD units decrease	NR [10700000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1q23.2	ACKR1	rs12075-G		1E-55		0.3751	[0.33-0.42] SD units decrease	NR [10700000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1q23.2	ACKR1	rs12075-G	NR	1E-26		0.1671	[0.14-0.2] SD units decrease	NR [10700000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.58	9E-23		0.03469341	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.58	1E-9		0.02199662	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.5801	2E-20		0.03343923	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.5801	7E-16		0.02826954	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1q23.2	DARC	rs12075-A	0.58	2E-13		0.02609054	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1q23.2	NR	rs12075-?		7E-7	(CXCL5)	0.3627	[NR] unit decrease	Illumina [NR]	N
1799	chr1	159175353	159175354	rs12075	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1q23.2	intergenic	rs12075-A	0.577	1E-6		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1799	chr1	159175353	159175354	rs12075	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.2	FCER1A, OR10J1, DARC, OR10J5	rs12075-A	0.436	1E-21	(MCP1 )	0.1	[NR] pg/mL increase	Illumina [899892]	N
1799	chr1	159175353	159175354	rs12075	23017229	Voruganti VS	2012-09-24	Cytokine	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 levels	815 Hispanic children	NA	1q23.2	DARC	rs12075-A	0.43	1E-21				Illumina [NR]	N
1799	chr1	159175353	159175354	rs12075	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	1q23.2	DARC	rs12075-A	0.49	4E-51	(MCP-1)			Affymetrix [~ 1900000] (imputed)	N
1799	chr1	159175353	159175354	rs12075	22037903	Crosslin DR	2011-10-30	Hum Genet	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	12,046 European ancestry individuals, 1,487 African ancestry individuals	NA	1q23.2	DARC	rs12075-G	0.08	5E-24	(AA)	1.27	[1.03-1.51] K/ul increase	Illumina [532566]	N
1799	chr1	159175493	159175494	rs34599082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q23.2		rs34599082-T	NR	1E-44		0.1446	[0.12-0.16] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q23.2		rs34599082-T	NR	5E-59		0.167	[0.15-0.19] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1q23.2		rs34599082-C	0.986	2E-14				Affymetrix [10369434] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1q23.2		rs34599082-C	0.986	2E-26				Affymetrix [10369434] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q23.2		rs34599082-C	0.986	2E-11				Affymetrix [10369434] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.013618	3E-79		0.1795904	[0.16-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.013624	5E-44		0.13245608	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.013622	1E-94		0.19707166	[0.18-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.01363	3E-34		0.11625312	[0.098-0.135] unit decrease	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.013626	5E-45		0.134598	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.2	DARC	rs34599082-T	0.0136269999999999	2E-17		0.08166969	[0.063-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q23.2	NR	rs34599082-T	0.013363	2E-77		0.151481	[0.14-0.17] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q23.2	NR	rs34599082-C	0.986565	7E-94		0.173021	[0.16-0.19] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q23.2		rs34599082-?	NR	2E-63				NR [~ 8900000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	3E-23		0.1527298	[0.12-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	9E-30		0.1743372	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	2E-28		0.1701612	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	1E-18		0.1346594	[0.1-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0137	2E-29		0.1730472	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	6E-31		0.1786066	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	4E-12		0.106191	[0.076-0.136] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	4E-20		0.1404842	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175493	159175494	rs34599082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q23.2	DARC	rs34599082-T	0.0138	9E-29		0.1714806	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1799	chr1	159175526	159175527	rs13962	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	DARC	rs13962-A	0.171	6E-13	(C-C motif chemokine 14, CCL14.2900.53.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1799	chr1	159175526	159175527	rs13962	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	DARC	rs13962-A	NR	2E-11		0.09	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
1799	chr1	159176489	159176490	rs12042349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs12042349-T	NR	2E-31		0.0466	[0.039-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1799	chr1	159177747	159177748	rs863006	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q23.2	Intergenic	rs863006-A	0.5602	1E-15	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1799	chr1	159177747	159177748	rs863006	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q23.2	Intergenic	rs863006-A	0.5624	2E-10	(MTAG)	0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1799	chr1	159187529	159187530	rs17666424	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (fetal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	1q23.2	ACKR1	rs17666424-?	NR	3E-6		0.59	[0.34-0.84] unit increase	Affymetrix [622716]	N
1799	chr1	159187616	159187617	rs79722469	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs79722469-C	0.972493	1E-73		0.110472	[0.099-0.122] unit increase	NR [NR]	N
1799	chr1	159188482	159188483	rs3027067	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs3027067-A	NR	2E-49		0.0892	[0.077-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
1799	chr1	159196764	159196765	rs10489849	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	IGSF4B	rs10489849-?	NR	1E-6	(MCP1)			Affymetrix [70897]	N
1799	chr1	159205407	159205408	rs141737681	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs141737681-C	0.987535	5E-61		0.15044	[0.13-0.17] unit increase	NR [NR]	N
1799	chr1	159209864	159209865	rs114272969	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs114272969-A	NR	2E-17		0.0962	[0.074-0.118] unit increase	Affymetrix [9000000] (imputed)	N
1799	chr1	159218265	159218266	rs3845624	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs3845624-?	NR	4E-7		0.04484527	[0.028-0.062] unit increase	Illumina [30861016] (imputed)	N
1799	chr1	159218265	159218266	rs3845624	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	1q23.2	DARC	rs3845624-C	0.47	2E-11	(hsCRP)			Affymetrix [~ 1900000] (imputed)	N
1799	chr1	159223786	159223787	rs2262422	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs2262422-G	0.9584	8E-24		0.0664	[0.053-0.079] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1799	chr1	159237949	159237950	rs56256237	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs56256237-C	0.9622	5E-14		0.0504	[0.037-0.064] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1799	chr1	159247237	159247238	rs61828213	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs61828213-G	0.9614	5E-16		0.0511	[0.039-0.063] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1799	chr1	159248047	159248048	rs2254681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q23.2		rs2254681-A	0.2517	4E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1800	chr1	159253132	159253133	rs111231035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs111231035-C	NR	3E-26		0.0829	[0.068-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1800	chr1	159272059	159272060	rs2251746	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	1q23.2		rs2251746-C	0.19	1E-17				Affymetrix, Illumina [NR] (imputed)	N
1800	chr1	159272059	159272060	rs2251746	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	FCER1A	rs2251746-C	NR	5E-26		0.09	[NR] unit increase	Affymetrix [2540223] (imputed)	N
1800	chr1	159272059	159272060	rs2251746	18846228	Weidinger S	2008-08-22	PLoS Genet	Genome-wide scan on total serum IgE levels identifies FCER1A as novel susceptibility locus.	IgE levels	1,530 European ancesrty individuals	9,769 European ancestry individuals	1q23.2	FCER1A	rs2251746-C	0.26	2E-20		19.2	[NR] % decrease	Affymetrix [353569]	N
1800	chr1	159277867	159277868	rs7549785	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	1q23.2	FCER1A	rs7549785-?		5E-7	(endpoint 6, East Asian)	8.22	[NR]	Illumina [> 750000]	N
1800	chr1	159278250	159278251	rs2494250	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	FCER1A, OR10J3	rs2494250-?	NR	1E-14	(MCP1)			Affymetrix [70897]	N
1800	chr1	159282663	159282664	rs77383163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs77383163-C	NR	5E-18		0.0375	[0.029-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1800	chr1	159282889	159282893	rs565021665	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.2	NR	rs565021665-?	NR	2E-12		0.01798702	[0.013-0.023] unit decrease	Illumina [30613845] (imputed)	N
1800	chr1	159282889	159282893	rs565021665	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q23.2	FCER1A, OR10J3	rs565021665-C	0.5056	4E-13		0.02653775	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1800	chr1	159287343	159287343	rs36080575	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1q23.2	NR	rs36080575-TA		5E-29		0.3012	[0.25-0.35] SD units increase	NR [10700000] (imputed)	N
1800	chr1	159290660	159290661	rs4269772	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Monocyte chemoattractant protein-4 levels	982 Scottish ancestry individuals		1q23.2	NR	rs4269772-C	0.20498	2E-10		0.35786	[0.25-0.47] unit decrease	Illumina [7903493] (imputed)	N
1800	chr1	159291682	159291683	rs6703348	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.2	NR	rs6703348-G		5E-16		0.145	[0.11-0.18] SD units increase	NR [10700000] (imputed)	N
1800	chr1	159292849	159292850	rs4282816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs4282816-A	NR	8E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1800	chr1	159299813	159299814	rs56288844	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	FCER1A	rs56288844-A	0.02	1E-16		0.178	[0.13-0.22] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1800	chr1	159308070	159308071	rs12074934	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1q23.2	OR10J3, OR10J7P	rs12074934-C	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1800	chr1	159308998	159308999	rs150365073	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs150365073-T	0.989975	2E-12		0.0733175	[0.053-0.094] unit decrease	NR [NR]	N
1800	chr1	159313841	159313842	rs12132451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q23.2		rs12132451-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1800	chr1	159320358	159320359	rs11265174	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	1q23.2	NR	rs11265174-A	NR	1E-40		0.0796	[0.068-0.091] unit decrease	Illumina [~ 9000000] (imputed)	N
1800	chr1	159326879	159326880	rs4656784	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	1q23.2	OR10J3	rs4656784-G	NR	2E-16		0.08	[NR] unit increase	Affymetrix [2540223] (imputed)	N
1800	chr1	159335275	159335276	rs12045356	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1q23.2	NR	rs12045356-G	NR	2E-9		0.1294	[0.087-0.172] SD units decrease	NR [10700000] (imputed)	N
1800	chr1	159336133	159336134	rs115368096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs115368096-C	NR	2E-9		0.0466	[0.031-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1800	chr1	159340298	159340299	rs12141365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q23.2	Intergenic	rs12141365-T	0.905	1E-9	(MTAG)	0.0186	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1800	chr1	159342438	159342439	rs6687840	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	1q23.2	OR10J3	rs6687840-?	NR	7E-6				Illumina [542944]	N
1800	chr1	159357683	159357684	rs4446959	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	1q23.2	OR10J1	rs4446959-?	NR	8E-6				Illumina [542944]	N
1800	chr1	159358244	159358245	rs144398877	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs144398877-A	0.983588	3E-21		0.0778366	[0.062-0.094] unit decrease	NR [NR]	N
1800	chr1	159359022	159359023	rs115023714	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs115023714-G	0.969332	5E-8		0.0325165	[0.021-0.044] unit increase	NR [NR]	N
1800	chr1	159359029	159359030	rs115615753	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs115615753-C	NR	2E-22		0.0611	[0.049-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1800	chr1	159369041	159369042	rs114733917	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs114733917-G	0.976797	2E-22		0.0681668	[0.054-0.082] unit decrease	NR [NR]	N
1801	chr1	159400358	159400359	rs11265191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q23.2	Intergenic	rs11265191-T	0.331	5E-10	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1801	chr1	159400358	159400359	rs11265191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q23.2		rs11265191-T	0.3346	2E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1801	chr1	159400358	159400359	rs11265191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q23.2	Intergenic	rs11265191-T	0.3346	5E-11	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1801	chr1	159400358	159400359	rs11265191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q23.2	Intergenic	rs11265191-T	0.3356	4E-8	(MTAG)	0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1801	chr1	159405463	159405464	rs75995782	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs75995782-G	0.978375	3E-39		0.0894107	[0.076-0.103] unit decrease	NR [NR]	N
1801	chr1	159405958	159405959	rs4128725	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	OR10J1	rs4128725-?	NR	4E-12	(MCP1)			Affymetrix [70897]	N
1801	chr1	159410974	159410975	rs4656236	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.2	NR	rs4656236-G		1E-16		0.1537	[0.12-0.19] SD units decrease	NR [10700000] (imputed)	N
1801	chr1	159410974	159410975	rs4656236	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1q23.2	NR	rs4656236-G		3E-21		0.2593	[0.21-0.31] SD units decrease	NR [10700000] (imputed)	N
1801	chr1	159433732	159433733	rs185511814	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AL513323.1	rs185511814-?	NR	5E-9	(female)	0.491726	[NR] unit increase	Affymetrix [NR] (imputed)	N
1801	chr1	159433842	159433843	rs150377363	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs150377363-T	0.980434	4E-9		0.0465902	[0.031-0.062] unit decrease	NR [NR]	N
1801	chr1	159435888	159435889	rs143273561	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs143273561-C	0.97245	1E-17		0.0533142	[0.041-0.066] unit decrease	NR [NR]	N
1801	chr1	159436348	159436349	rs41264481	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs41264481-C	NR	2E-29		0.1018	[0.084-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1801	chr1	159447162	159447163	rs55688443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs55688443-T	NR	3E-33		0.0973	[0.081-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1801	chr1	159453936	159453937	rs4133289	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	1q23.2	OR10J1, OR10J5	rs4133289-?	0.19	2E-7	(Hgb)			Affymetrix [70897]	N
1801	chr1	159458370	159458371	rs10797037	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total)	866 European and unknown ancestry individuals	NA	1q23.2	NR	rs10797037-?	NR	2E-6		0.19	[0.11-0.26] unit increase	Illumina [> 2600000] (imputed)	N
1801	chr1	159462380	159462381	rs4325129	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.2	OR10J1, OR10J5	rs4325129-G	0.148	6E-6	(MCP1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1801	chr1	159477623	159477624	rs4641306	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs4641306-G	0.0239234	2E-16		0.0562066	[0.043-0.07] unit decrease	NR [NR]	N
1801	chr1	159504053	159504054	rs10908733	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	1q23.2	NR	rs10908733-T	NR	2E-9		0.1387	[0.093-0.184] SD units increase	NR [10700000] (imputed)	N
1801	chr1	159508008	159508009	rs75285799	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	1q23.2	NR	rs75285799-T	NR	2E-26		0.0717	[0.059-0.085] unit decrease	Illumina [~ 9000000] (imputed)	N
1802	chr1	159514963	159514964	rs144970957	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs144970957-T	0.978127	6E-54		0.109475	[0.096-0.123] unit increase	NR [NR]	N
1802	chr1	159515294	159515295	rs11265230	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q23.2	NR	rs11265230-G		2E-11		0.1456	[0.1-0.19] SD units decrease	NR [10700000] (imputed)	N
1802	chr1	159518891	159518892	rs2369135	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.2	NR	rs2369135-?	NR	3E-119		0.08350969	[0.076-0.091] unit increase	Illumina [30613845] (imputed)	N
1802	chr1	159518891	159518892	rs2369135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q23.2	intergenic	rs2369135-A	0.9983	2E-9		0.2950005	[0.2-0.39] unit increase	Affymetrix [~ 2500000] (imputed)	N
1802	chr1	159519142	159519143	rs9662662	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1q23.2	NR	rs9662662-C		2E-9		0.1548	[0.1-0.21] SD units decrease	NR [10700000] (imputed)	N
1802	chr1	159521991	159521992	rs56040707	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	1q23.2	NR	rs56040707-G	0.027	5E-6		2.04	[1.55-2.62]	Illumina [64973696] (imputed)	N
1802	chr1	159529346	159529347	rs143969748	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	White blood cell count	6,007 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	1q23.2		rs143969748-A	0.0626	1E-19		0.35	[0.27-0.43] unit decrease	Illumina [7880617]	N
1802	chr1	159530661	159530662	rs12741992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APCS	5,364 Icelandic ancestry individuals	NA	1q23.2		rs12741992-C	0.03094	2E-44		0.707578	[0.61-0.81] unit decrease	Illumina [7506463] (imputed)	N
1802	chr1	159535939	159535940	rs1446968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1q23.2	NR	rs1446968-C	NR	4E-15		0.0298	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1802	chr1	159536212	159536213	rs71632673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	APCS	rs71632673-A	0.023	2E-24	(Serum amyloid P-component, APCS.2474.54.5)	0.84	[0.68-1] unit decrease	Affymetrix [10572788] (imputed)	N
1802	chr1	159540430	159540431	rs77056528	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs77056528-T	0.978023	9E-54		0.107523	[0.094-0.121] unit decrease	NR [NR]	N
1802	chr1	159550604	159550605	rs12745083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	1q23.2	NR	rs12745083-T	NR	1E-33		0.0956	[0.08-0.111] unit increase	Affymetrix [9000000] (imputed)	N
1802	chr1	159550604	159550605	rs12745083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs12745083-T	NR	1E-50		0.1132	[0.098-0.128] unit increase	Affymetrix [9000000] (imputed)	N
1802	chr1	159550964	159550965	rs112689575	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs112689575-G	0.979293	5E-13		0.0519924	[0.038-0.066] unit decrease	NR [NR]	N
1802	chr1	159554480	159554481	rs12121280	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	1q23.2	OR10AE1P	rs12121280-T	NR	2E-8		0.841469	[0.55-1.13] unit increase	Illumina [NR] (imputed)	N
1802	chr1	159554606	159554607	rs12079353	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.2	APCS, OR10J6P, RP11-740C1.2, OR10AE1P	rs12079353-A	0.02062374	6E-11	(EA, Serum amyloid P-component)	0.8678	[0.61-1.13] unit decrease	Affymetrix [509946]	N
1802	chr1	159557720	159557721	rs11545897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs11545897-T	NR	1E-20		0.1526	[0.12-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1802	chr1	159558257	159558258	rs2808661	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs2808661-A	0.0331	5E-18		0.058	[0.045-0.071] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1802	chr1	159558671	159558672	rs28383573	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APCS	5,364 Icelandic ancestry individuals	NA	1q23.2		rs28383573-T	0.1355	2E-25		0.263323	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
1802	chr1	159559087	159559088	rs73020704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs73020704-G	NR	1E-12		0.0582	[0.042-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1802	chr1	159562765	159562766	rs1446965	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	1q23.2	APCS	rs1446965-A	NR	8E-8		1.73	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1802	chr1	159564044	159564045	rs10494329	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs10494329-C	0.8557	3E-15		0.0308	[0.023-0.038] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1802	chr1	159566812	159566813	rs16842320	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs16842320-A	0.97587	8E-57		0.105535	[0.093-0.119] unit decrease	NR [NR]	N
1802	chr1	159567847	159567848	rs1037144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q23.2	Intergenic	rs1037144-A	0.5634	1E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1802	chr1	159573149	159573150	rs1470516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q23.2	Intergenic	rs1470516-A	0.4401	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1802	chr1	159573678	159573679	rs71628140	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.2	APCS	rs71628140-G	0.96703125	2E-27	(APCS, 2474_54_5)	0.7036572	[0.58-0.83] unit increase	Illumina [> 1000000] (imputed)	N
1802	chr1	159580872	159580873	rs17457976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs17457976-G	NR	2E-69		0.0593	[0.053-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1802	chr1	159605748	159605749	rs72698555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs72698555-T	NR	2E-34		0.0538	[0.045-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1802	chr1	159608854	159608855	rs72633672	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs72633672-A	0.9672	2E-10		0.0503	[0.035-0.066] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1802	chr1	159623544	159623545	rs76769546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs76769546-A	NR	1E-9		0.0342	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1802	chr1	159628219	159628220	rs61821567	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs61821567-C	0.967701	2E-20		0.0548272	[0.043-0.066] unit decrease	NR [NR]	N
1802	chr1	159642758	159642759	rs34197548	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	1q23.2	NR	rs34197548-C		9E-6		0.2938	[0.17-0.42] SD units decrease	NR [10700000] (imputed)	N
1803	chr1	159647187	159647188	rs79551159	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	1q23.2		rs79551159-G	0.06	8E-7		1.37	[0.98-2.27] unit decrease	Illumina [19468843] (imputed)	N
1803	chr1	159647987	159647988	rs12093699	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs12093699-?	NR	7E-15		0.06949826	[0.052-0.087] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159647987	159647988	rs12093699	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	1q23.2	CRP	rs12093699-?	0.29	6E-6	(CRP)			Illumina [496032]	N
1803	chr1	159648692	159648693	rs17459069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs17459069-T	NR	2E-80		0.117	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr1	159649699	159649700	rs10494326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs10494326-T	NR	2E-65		0.3521	[0.31-0.39] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159649699	159649700	rs10494326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs10494326-?	NR	2E-109		0.3896071	[0.36-0.42] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159650530	159650531	rs116073407	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs116073407-G	0.985323	9E-16		0.0706692	[0.053-0.088] unit decrease	NR [NR]	N
1803	chr1	159655517	159655518	rs726640	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs726640-?	NR	6E-117		0.4141669	[0.38-0.45] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159655517	159655518	rs726640	22492993	Doumatey AP	2012-04-05	Hum Mol Genet	C-reactive protein (CRP) promoter polymorphisms influence circulating CRP levels in a genome-wide association study of African Americans.	C-reactive protein	837 African American individuals	486 West African ancestry individuals	1q23.2	CRPP1, CRP	rs726640-?	NR	2E-13		0.44	[0.32-0.56] log mg/dl increase	Affymetrix [2366856] (imputed)	N
1803	chr1	159655725	159655726	rs2592902	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs2592902-?	NR	8E-102		0.1832233	[0.17-0.2] unit decrease	Illumina [30861016] (imputed)	N
1803	chr1	159655725	159655726	rs2592902	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	C-reactive protein levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	1q23.2	CRP	rs2592902-A	0.38	1E-9				Illumina [7500450] (imputed)	N
1803	chr1	159655798	159655799	rs79828990	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q23.2	NR	rs79828990-?	NR	7E-6		0.034045	[0.019-0.049] unit increase	Affymetrix [805426] (imputed)	N
1803	chr1	159659108	159659109	rs12749227	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q23.2	CRP	rs12749227-T	NR	1E-86	(men)	0.116	[NR] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1803	chr1	159659108	159659109	rs12749227	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q23.2	CRP	rs12749227-T	NR	1E-180	(women)	0.152	[NR] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1803	chr1	159665805	159665806	rs79162334	33134509	Tang ME	2020-09-10	Neurol Genet	Matrix metalloproteinase-degraded type I collagen is associated with APOE/TOMM40 variants and preclinical dementia.	Serum type 1 collagen metabolite levels	4,891 Danish ancestry individuals	NA	1q23.2	NR	rs79162334-A	0.05	7E-8		0.1737	[0.11-0.23] unit increase	Illumina [7672338] (imputed)	N
1803	chr1	159667516	159667517	rs149520992	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs149520992-T	0.01	2E-13		0.252	[0.19-0.32] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159668513	159668514	rs2794519	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	1q23.2	NR	rs2794519-?	NR	2E-7		0.03446	[0.022-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1803	chr1	159670144	159670145	rs12741825	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	1q23.2	CRP	rs12741825-?	NR	1E-8	(C-reactive protein)			Illumina [up to 10879115] (imputed)	N
1803	chr1	159670261	159670262	rs61821592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs61821592-T	NR	2E-21		0.08	[0.064-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr1	159670335	159670336	rs12755606	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	1q23.2	CRP	rs12755606-C	NR	4E-120				NR [25015711] (imputed)	N
1803	chr1	159670935	159670936	rs72698571	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs72698571-T	0.1	4E-66		0.129	[0.11-0.14] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159670966	159670967	rs72698573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs72698573-C	NR	4E-97		0.09	[0.082-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr1	159674932	159674933	rs876537	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in high fat diet	7,873 European ancestry women	NA	1q23.2	CRPP1	rs876537-?		3E-9		1.22	NR	Affymetrix, Illumina [21784812] (imputed)	N
1803	chr1	159674932	159674933	rs876537	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs876537-?	NR	3E-100		0.1842309	[0.17-0.2] unit decrease	Illumina [30861016] (imputed)	N
1803	chr1	159674932	159674933	rs876537	21647738	Wu Y	2011-06-07	Inflammation	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry female individuals	NA	1q23.2	CRP	rs876537-C	0.43	1E-9		0.288	[0.20-0.38] unit increase	Affymetrix [2073674] (imputed)	N
1803	chr1	159675716	159675717	rs876538	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	1q23.2	NR	rs876538-?	0.79	2E-6		1.1363636	[1.09-1.2]	Illumina [~ 1113287] (imputed)	N
1803	chr1	159676010	159676011	rs2808628	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in inactive individuals	5,958 European ancestry women	NA	1q23.2	CRPP1	rs2808628-?		9E-9		1.26	NR	Affymetrix, Illumina [21784812] (imputed)	N
1803	chr1	159676010	159676011	rs2808628	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	CRP	rs2808628-A	0.334	5E-12	(C-reactive protein, CRP.4337.49.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1803	chr1	159676170	159676171	rs16842559	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs16842559-?	NR	4E-25		0.1924735	[0.16-0.23] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159676170	159676171	rs16842559	23844046	Dorajoo R	2013-07-02	PLoS One	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NA	1q23.2	CRP	rs16842559-T	0.887	4E-21		0.106	[NR] unit increase	Illumina [up to 1745429] (imputed)	N
1803	chr1	159676219	159676220	rs16842568	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1q23.2	CRP	rs16842568-A	0.8561	1E-8	(Asian)	0.3729	[0.24-0.51] unit decrease	Illumina [~ 200000]	N
1803	chr1	159677653	159677654	rs6667499	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	High-sensitivity C-reactive protein levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1q23.2	CRP	rs6667499-A	0.044	2E-25		0.569	[0.46-0.68] unit increase	Affymetrix [up to 12642786] (imputed)	N
1803	chr1	159677903	159677904	rs113188187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs113188187-T	NR	3E-39		0.105	[0.089-0.121] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159678815	159678816	rs2794520	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	High-sensitivity C-reactive protein levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1q23.2	CRP	rs2794520-T	0.309	5E-24		0.224	[0.18-0.27] unit decrease	Affymetrix [up to 12642786] (imputed)	N
1803	chr1	159678815	159678816	rs2794520	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs2794520-?	NR	2E-106		0.192395	[0.18-0.21] unit decrease	Illumina [30861016] (imputed)	N
1803	chr1	159678815	159678816	rs2794520	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q23.2	CRP	rs2794520-C	0.33	4E-523		0.182	[0.17-0.19] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1803	chr1	159678815	159678816	rs2794520	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	1q23.2	CRP	rs2794520-C	NR	2E-186		0.16	[0.15-0.17] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1803	chr1	159678815	159678816	rs2794520	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	1q23.2	CRP	rs2794520-A	0.36	3E-22	(CRP)	0.47	[0.32-0.62] mmol/l decrease	Illumina [329091]	N
1803	chr1	159678815	159678816	rs2794520	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	1q23.2	CRP	rs2794520-?	NR	3E-8	(CRP average 2,6,7)			Affymetrix [70897]	N
1803	chr1	159679195	159679196	rs12029262	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs12029262-C	0.11	3E-72		0.129	[0.12-0.14] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159680816	159680817	rs3093070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs3093070-G	NR	5E-29		0.1019	[0.084-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159680867	159680868	rs2808630	18385676	Amos CI	2008-04-03	Nat Genet	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	1q23.2	CRP	rs2808630-G	NR	7E-6		1.22	[1.10-1.35]	Illumina [317498]	N
1803	chr1	159681363	159681364	rs3093068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	83,025 East Asian ancestry individuals	NA	1q23.2		rs3093068-C	0.136869	9E-83		0.131136	[0.12-0.14] unit increase	Illumina [13470202] (imputed)	N
1803	chr1	159681363	159681364	rs3093068	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	1q23.2	CRP	rs3093068-?	NR	1E-64		0.1272	[0.11-0.14] unit increase novel	Illumina [6108953] (imputed)	N
1803	chr1	159682232	159682233	rs1205	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q23.2	CRP	rs1205-?		2E-157		0.123	[0.11-0.13] unit increase	Illumina [31500000] (imputed)	N
1803	chr1	159683090	159683091	rs1130864	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Erythropoietin levels	8,318 European ancestry individuals	NA	1q23.2	CRP	rs1130864-A	0.32	4E-23		0.11	[0.090-0.130] unit increase	Illumina [~ 9000000] (imputed)	N
1803	chr1	159683437	159683438	rs1800947	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs1800947-C	0.94	2E-200		0.298	[0.28-0.32] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159683796	159683797	rs377351051	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1q23.2		rs377351051-?	NR	6E-9		1.03537	[0.68-1.39] unit decrease	NR [9800000] (imputed)	N
1803	chr1	159683813	159683814	rs77832441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs77832441-A	NR	4E-287		0.726	[0.69-0.77] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr1	159683815	159683816	rs143101792	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1q23.2		rs143101792-?	NR	5E-23		0.698086	[0.56-0.84] unit decrease	NR [9800000] (imputed)	N
1803	chr1	159684664	159684665	rs3091244	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	C-reactive protein levels	8,318 European ancestry individuals	NA	1q23.2	CRP	rs3091244-A	0.32	7E-68		0.33	[0.29-0.37] unit increase	Illumina [~ 9000000] (imputed)	N
1803	chr1	159684664	159684665	rs3091244	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration	10,798 European ancestry women	NA	1q23.2	CRP	rs3091244-?		1E-10		0.82	[NR]	Affymetrix, Illumina [21784812] (imputed)	N
1803	chr1	159684664	159684665	rs3091244	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs3091244-A	0.35	3E-332		0.169	[0.16-0.18] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159684664	159684665	rs3091244	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1q23.2	CRP	rs3091244-A	0.4759	9E-134		0.2412	[0.22-0.26] unit increase	Illumina [~ 200000]	N
1803	chr1	159684664	159684665	rs3091244	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	1q23.2	CRP	rs3091244-?	NR	6E-28		0.2	[NR] mg/dl increase	Illumina [336108]	N
1803	chr1	159685135	159685136	rs3093059	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs3093059-?	NR	6E-13		0.09022097	[0.066-0.115] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159685135	159685136	rs3093059	21196492	Okada Y	2010-12-31	Hum Mol Genet	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	1q23.2	CRP	rs3093059-G	0.12	4E-21		0.161	[0.13-0.19] unit increase	Illumina [477784]	N
1803	chr1	159690811	159690812	rs2246469	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs2246469-A	0.34	6E-27		0.046	[0.038-0.054] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159691558	159691559	rs1341665	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs1341665-?	NR	1E-97		0.1837559	[0.17-0.2] unit decrease	Illumina [30861016] (imputed)	N
1803	chr1	159691558	159691559	rs1341665	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	1q23.2	CRP	rs1341665-A	0.963	2E-20	(hsCRP)			Affymetrix [~ 1900000] (imputed)	N
1803	chr1	159692536	159692537	rs12068753	25266886	Kim JJ	2014-09-30	Pediatr Cardiol	Common variants in the CRP promoter are associated with a high C-reactive protein level in Kawasaki disease.	Inflammatory biomarkers in Kawasaki disease	178 Korean ancestry cases	473 Korean ancestry cases	1q23.2	CRP	rs12068753-A	0.144	1E-13	(C-reactive protein)	3.97	[2.95-4.99] mg/dL increase	Illumina [646914]	N
1803	chr1	159692572	159692573	rs2808634	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs2808634-?	NR	3E-6		0.04906185	[0.029-0.07] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159692572	159692573	rs2808634	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	1q23.2	FCER1A, DUSP23, OR10J1, APCS, DARC, IFI16, OR10J5, CRP, OR10J3, OLFML2B, FCRL6	rs2808634-T	0.156	3E-10	(AA women)	0.153	[0.11-0.20] unit decrease	Affymetrix [up to 2203609] (imputed)	N
1803	chr1	159693604	159693605	rs2211320	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRP	5,368 Icelandic ancestry individuals	NA	1q23.2		rs2211320-A	0.3152	3E-18		0.181963	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1803	chr1	159693604	159693605	rs2211320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q23.2		rs2211320-A	NR	6E-1003		0.1724	[0.17-0.18] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1803	chr1	159694778	159694779	rs7551731	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs7551731-T	0.670377	8E-1349		0.168069	[0.16-0.17] unit increase	NR [NR]	N
1803	chr1	159694778	159694779	rs7551731	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs7551731-T	0.66	8E-475	(BMI-adjusted)	0.186	[0.18-0.19] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs7553007-?	NR	7E-107		0.1918928	[0.17-0.21] unit decrease	Illumina [30861016] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	C-reactive protein levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	1q23.2	CRP	rs7553007-A	0.327	7E-12		0.202	[0.15-0.26] unit decrease	Illumina [at least 13541454] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	24763700	Vinayagamoorthy N	2014-04-24	PLoS One	New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.	C-reactive protein levels	7,626 Korean ancestry individuals	903 Korean ancestry individuals	1q23.2	CRP	rs7553007-C	0.369	2E-16		0.164	[NR] unit increase	Affymetrix [1219546] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	1q23.2	FCER1A, DUSP23, OR10J1, APCS, DARC, IFI16, OR10J5, CRP, OR10J3, OLFML2B, FCRL6	rs7553007-T	0.228	1E-37	(AA women)	0.272	[0.23-0.31] unit decrease	Affymetrix [up to 2203609] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	1q23.2	CRP	rs7553007-G	0.344	1E-9	(HA women)	0.129	[0.078-0.180] unit increase	Affymetrix [up to 2203609] (imputed)	N
1803	chr1	159698548	159698549	rs7553007	19567438	Elliott P	2009-07-01	JAMA	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals	13,615 European ancestry and Indian Asian ancestry Individuals	1q23.2	CRP	rs7553007-A	NR	8E-44		20.7	[18.9-23.4] % decrease	Affymetrix, Illumina, Perlegen [~ 1400000] (imputed)	N
1803	chr1	159700038	159700039	rs11265260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs11265260-G	NR	1E-390		0.2137	[0.2-0.22] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159700038	159700039	rs11265260	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q23.2	NR	rs11265260-?	NR	2E-23		0.1648213	[0.13-0.2] unit increase	Illumina [30861016] (imputed)	N
1803	chr1	159700038	159700039	rs11265260	18439552	Reiner AP	2008-04-24	Am J Hum Genet	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	1q23.2	CRP	rs11265260-?	NR	7E-6				Illumina [317000]	N
1803	chr1	159703441	159703442	rs4287174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.2	CRP	rs4287174-T	0.69109375	2E-14	(CRP, 4337_49_2)	0.20718846	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1803	chr1	159708824	159708825	rs12042360	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in visceral obesity (waist circumference)	4,155 European ancestry women	NA	1q23.2	RP11-419N10.5, CRP	rs12042360-?		2E-9		1.52	NR	Affymetrix, Illumina [21784812] (imputed)	N
1803	chr1	159710516	159710517	rs11265263	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs11265263-A	0.07	1E-197		0.273	[0.26-0.29] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159710516	159710517	rs11265263	21396408	Miller EK	2011-03-25	Vaccine	Atopy history and the genomics of wheezing after influenza vaccination in children 6-59 months of age.	Vaccine-related adverse events	6 European ancestry cases,55 European ancestry controls	NA	1q23.2	intergenic	rs11265263-?	0.04	3E-6	(wheezing)			Illumina [468458]	N
1803	chr1	159713025	159713026	rs78767552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.2	NR	rs78767552-C	0.0122	3E-10	(HBD)	5.907	NR unit increase	Illumina [1671387] (imputed)	N
1803	chr1	159715988	159715989	rs80272044	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs80272044-A	0.986043	6E-144		0.219651	[0.2-0.24] unit decrease	NR [NR]	N
1803	chr1	159717161	159717162	rs11588887	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in obesity	3,000 European ancestry women	NA	1q23.2	RP11-419N10.5, CRP	rs11588887-?		1E-9		1.68	NR	Affymetrix, Illumina [21784812] (imputed)	N
1803	chr1	159718311	159718312	rs4255379	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs4255379-G	0.392979	2E-145		0.0525035	[0.048-0.057] unit decrease	NR [NR]	N
1803	chr1	159722055	159722056	rs4131568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs4131568-T	NR	2E-284		0.0915	[0.087-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159722055	159722056	rs4131568	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q23.2	CRP	rs4131568-T	0.35	6E-107		0.096	[0.088-0.104] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1803	chr1	159723799	159723800	rs114530473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs114530473-T	NR	2E-38		0.1034	[0.088-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159725182	159725183	rs115381557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs115381557-T	NR	2E-66		0.2123	[0.19-0.24] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159726585	159726586	rs115585839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs115585839-T	NR	8E-39		0.1081	[0.092-0.124] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159739964	159739965	rs188600252	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		1q23.2	DUSP23	rs188600252-G	NR	1E-6		0.14	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1803	chr1	159740173	159740174	rs77509028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs77509028-T	NR	3E-10		0.0615	[0.042-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1803	chr1	159752065	159752066	rs1129923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs1129923-A	NR	1E-11		0.0281	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1803	chr1	159753182	159753183	rs4233356	21787189	Nyberg F	2011-07-01	Pharmacogenomics	Interstitial lung disease in gefitinib-treated Japanese patients with non-small-cell lung cancer: genome-wide analysis of genetic data.	Interstitial lung disease	80 Japanese ancestry cases, 194 Japanese ancestry controls	NA	1q23.2	DUSP23	rs4233356-T	NR	9E-6		2.51	[1.64-3.84]	Illumina, Perlegen [465816]	N
1803	chr1	159766778	159766779	rs72700609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	NR	rs72700609-A	0.132	5E-90	(Fc receptor-like protein 6, FCRL6.6617.12.3)	0.75	[0.67-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
1804	chr1	159783558	159783559	rs58240276	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	FCRL6	rs58240276-T	0.19	3E-92	(Fc receptor-like protein 6, FCRL6.6617.12.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
1804	chr1	159785283	159785284	rs4411129	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q23.2	NR	rs4411129-G	NR	1E-11		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1804	chr1	159785283	159785284	rs4411129	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs4411129-C	0.293461	7E-15		0.0179175	[0.013-0.022] unit decrease	NR [NR]	N
1804	chr1	159799909	159799910	rs34687326	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q23.2	SLAMF8	rs34687326-G	0.9	1E-6		1.18	[1.12-1.24]	Illumina [9560910] (imputed)	N
1804	chr1	159799909	159799910	rs34687326	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q23.2	SLAMF8	rs34687326-?		1E-8				Illumina [9560910] (imputed)	N
1804	chr1	159804652	159804653	rs4656852	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q23.2	FCRL6	rs4656852-?	NR	8E-6	(carnitine)	0.50755376	[0.28-0.73] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1804	chr1	159818512	159818513	rs6659742	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	1q23.2	C10ORF204	rs6659742-?	NR	7E-7	(OCB negative vs. controls)	1.99	[1.52-2.61]	Illumina [495970]	N
1804	chr1	159825189	159825190	rs77141833	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	1q23.2	VSIG8	rs77141833-C	0.03	2E-6		1.12	[0.69-1.55] unit decrease	Illumina [~ 31000000] (imputed)	N
1804	chr1	159833417	159833418	rs6668050	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q23.2	NR	rs6668050-G	0.956515	1E-8		0.026738	[0.018-0.036] unit decrease	NR [NR]	N
1804	chr1	159856428	159856429	rs2501324	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	1q23.2	CCDC19	rs2501324-?	0.01	2E-10		0.14	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
1804	chr1	159886421	159886422	rs12122337	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	1q23.2	TAGLN2	rs12122337-G	0.06	1E-6	(CDC Perianal)	2.2	[1.56-3.07]	Illumina [539846]	N
1804	chr1	159891160	159891163	rs72007288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.2	TAGLN2	rs72007288-T	0.42277	2E-24		0.023055483	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1804	chr1	159891916	159891917	rs6427499	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q23.2	TAGLN2	rs6427499-T	0.5118	2E-11		0.02413371	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1804	chr1	159892087	159892088	rs2789422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.2	TAGLN2	rs2789422-A	0.417424	6E-42		0.030559404	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1804	chr1	159892087	159892088	rs2789422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.2	NR	rs2789422-G	0.59224	2E-52				Affymetrix, Illumina [17210439] (imputed)	N
1804	chr1	159892087	159892088	rs2789422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q23.2	NR	rs2789422-G	0.582338	2E-54		0.030073	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1804	chr1	159892087	159892088	rs2789422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q23.2	TAGLN2	rs2789422-A	0.419	6E-17		0.03053915	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1804	chr1	159897387	159897388	rs1934074	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q23.2	TAGLN2, IGSF9	rs1934074-?		2E-9				NR [7428630] (imputed)	N
1804	chr1	159902785	159902786	rs12139175	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q23.2		rs12139175-G	0.34	5E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
1804	chr1	159902785	159902786	rs12139175	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q23.2		rs12139175-G	0.34	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
1804	chr1	159903633	159903634	rs1320566	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q23.2	NR	rs1320566-T	0.3441	5E-12				NR [9056863] (imputed)	N
1804	chr1	159904887	159904888	rs10797054	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q23.2	NR	rs10797054-C	0.3514	4E-9				NR [9056863] (imputed)	N
1804	chr1	159906848	159906849	rs10797055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q23.2		rs10797055-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1804	chr1	159906848	159906849	rs10797055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q23.2		rs10797055-A	0.5204	5E-8	(conditional-joint)	0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1805	chr1	159924567	159924568	rs68093531	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q23.2	CCDC19, TAGLN2, IGSF9, SLAMF9, LOC100505633, PIGM	rs68093531-C	0.878	3E-6		1.0846928		NR [9372253] (imputed)	N
1805	chr1	159936732	159936733	rs1934073	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs1934073-T	0.8817	4E-28		0.0528	[0.043-0.062] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1805	chr1	159936732	159936733	rs1934073	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1q23.2	NR	rs1934073-?	NR	4E-42		0.44	[0.36-0.52] unit increase	Illumina [at least 830937] (imputed)	N
1805	chr1	159964441	159964442	rs182344113	29058377	Sanchez-Roige S	2017-10-23	Addict Biol	Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.	Alcohol consumption over the past year	20,328 European ancestry individuals	NA	1q23.2	KCNJ9	rs182344113-G	0.002	2E-7		0.168	[0.105-0.232] unit increase	Illumina [13280794] (imputed)	N
1806	chr1	160046446	160046447	rs6692257	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs6692257-G	0.0648	6E-29		0.0581	[0.048-0.068] unit increase	Affymetrix, Illumina [12990599] (imputed)	N
1806	chr1	160053341	160053342	rs11265317	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.2	NR	rs11265317-C	0.9719	3E-11		0.0519	[0.037-0.067] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1806	chr1	160070942	160070943	rs12121609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.2		rs12121609-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1806	chr1	160077853	160077854	rs6688363	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	1q23.2	ATP1A2	rs6688363-T	0.166	2E-7	(Effect of Olanzapine on CGI-S)			Affymetrix [492900]	N
1806	chr1	160108661	160108662	rs10797060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.2	ATP1A2	rs10797060-G	0.264854	9E-9	(170 ms)	0.0349111	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1806	chr1	160108661	160108662	rs10797060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.2	ATP1A2	rs10797060-G	0.264854	2E-8	(172 ms)	0.0340795	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1806	chr1	160108661	160108662	rs10797060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.2	ATP1A2	rs10797060-G	0.264854	2E-8	(168 ms)	0.0344834	[0.022-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1806	chr1	160146493	160146494	rs16831514	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	1q23.2	ATP1A4	rs16831514-?		1E-7				Illumina [479403]	N
1806	chr1	160156141	160156142	rs762472595	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	1q23.2	ATP1A4	rs762472595-T	0.0026	4E-6	(Icelandic)	0.64	NA SD units decrease	Illumina [21568490] (imputed)	N
1807	chr1	160206066	160206067	rs11591179	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q23.2	DCAF8	rs11591179-T	0.46	2E-6	(EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1807	chr1	160206066	160206067	rs11591179	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q23.2	DCAF8	rs11591179-T	0.45	3E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1807	chr1	160210726	160210727	rs2369473	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1q23.2	DCAF8	rs2369473-C	0.509189675	7E-6		1.0888755	[1.05-1.13]	Illumina [10439017] (imputed)	N
1807	chr1	160238856	160238857	rs6427508	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1q23.2	DCAF8, COPA	rs6427508-?	NR	1E-7		0.067	[0.092-0.042] unit decrease	Illumina [12039487] (imputed)	N
1808	chr1	160317936	160317937	rs184886314	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q23.2	NCSTN	rs184886314-T	0.996	2E-6	(AA)	1.185	NR unit increase	Illumina [NR] (imputed)	N
1808	chr1	160347419	160347420	rs12080243	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	White blood cell count	6,007 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	1q23.2		rs12080243-T	0.135	4E-8		0.15	[0.091-0.209] unit decrease	Illumina [7880617]	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.1287	2E-24		0.1749	[0.14-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.5652	8E-56		0.2542	[0.22-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.1279	3E-10		0.1053	[0.073-0.138] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.5646	2E-11		0.1076	[0.076-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.1265	2E-30		0.1691	[0.14-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160348159	160348168	rs143725472	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.2		rs143725472-CTTTCTTTCT	0.5615	2E-100		0.2399	[0.22-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1808	chr1	160369919	160369919	rs34826218	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1q23.2		rs34826218-?	NR	5E-11				NR [9705931] (imputed)	N
1808	chr1	160389983	160389984	rs3737798	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q23.2	VANGL2	rs3737798-A	NR	4E-14		1.0741	NR	Affymetrix, Illumina [8278136] (imputed)	N
1808	chr1	160391778	160391779	rs12083518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q23.2		rs12083518-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1808	chr1	160392781	160392782	rs4359033	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q23.2	NR	rs4359033-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1808	chr1	160398239	160398240	rs66513715	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	1q23.2	VANGL2	rs66513715-D	0.201	5E-8		0.97107846	[NR]	Illumina [12493444] (imputed)	N
1808	chr1	160399585	160399586	rs6688100	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q23.2	VANGL2	rs6688100-?	NR	4E-6		1.098901	[1.05-1.15]	Illumina [at least 5000000] (imputed)	N
1808	chr1	160401229	160401230	rs11265395	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q23.2		rs11265395-C	0.2	9E-16		8.05	z score increase	Affymetrix [9061022] (imputed)	N
1808	chr1	160401229	160401230	rs11265395	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	1q23.2	SSBP3	rs11265395-?		2E-12				NR [7428630] (imputed)	N
1808	chr1	160401229	160401230	rs11265395	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q23.2	VANGL2	rs11265395-?		1E-9				NR [7428630] (imputed)	N
1808	chr1	160401229	160401230	rs11265395	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q23.2	NR	rs11265395-?	NR	2E-7		0.0526	[0.033-0.072] unit increase	Illumina [at least 560000] (imputed)	N
1808	chr1	160402258	160402259	rs17371986	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q23.2		rs17371986-G	0.2	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
1808	chr1	160402258	160402259	rs17371986	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q23.2	NR	rs17371986-G	0.2088	1E-17				NR [9056863] (imputed)	N
1808	chr1	160402258	160402259	rs17371986	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q23.2	VANGL2, SLAMF6	rs17371986-A	0.79	5E-6		1.07	[1.04-1.10]	Illumina [161311]	N
1808	chr1	160402538	160402539	rs10494343	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q23.2	NR	rs10494343-C	0.2088	2E-9				NR [9056863] (imputed)	N
1808	chr1	160413089	160413090	rs11265402	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q23.2		rs11265402-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1808	chr1	160414092	160414093	rs11265403	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q23.2		rs11265403-G	0.2	6E-33		11.96	z score increase	Affymetrix [9061022] (imputed)	N
1808	chr1	160414092	160414093	rs11265403	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 196)	19,670 European ancestry individuals	NA	1q23.2		rs11265403-?	NR	2E-8				NR [9705931] (imputed)	N
1808	chr1	160415923	160415924	rs12757461	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q23.2	NR	rs12757461-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1808	chr1	160415923	160415924	rs12757461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q23.2		rs12757461-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1808	chr1	160417156	160417157	rs12026490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q23.2		rs12026490-C	0.064737658	3E-13		0.42024294	[0.31-0.53] unit increase	Illumina [13429311] (imputed)	N
1808	chr1	160417156	160417157	rs12026490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q23.2		rs12026490-C	NR	3E-13		0.4202	[0.31-0.53] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1808	chr1	160417156	160417157	rs12026490	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1q23.2		rs12026490-T	NR	1E-12		0.8	[0.75-0.85]	NR [13810676] (imputed)	N
1808	chr1	160419939	160419940	rs117201373	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	1q23.2		rs117201373-G	0.06503645	3E-13		1.600151	[1.409976234-1.815975894]	Illumina [8919992] (imputed)	N
1808	chr1	160421915	160421916	rs16832015	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q23.2	VANGL2	rs16832015-?	0.01081	2E-6	(IED)			Illumina [475971]	N
1809	chr1	160439074	160439075	rs1748512	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.2	SLAMF6	rs1748512-A	0.78765625	5E-7	(SLAMF6, 5128_53_3)	0.14709434	[0.09-0.205] unit increase	Illumina [> 1000000] (imputed)	N
1809	chr1	160443972	160443973	rs148363003	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	1q23.2	SLAMF6	rs148363003-?		5E-10		1.62	[1.39-1.89]	Illumina [NR] (imputed)	N
1809	chr1	160452971	160452972	rs11291564	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.2	SLAMF6	rs11291564-A	0.735	3E-12	(SLAM family member 6, SLAMF6.5128.53.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1809	chr1	160464910	160464911	rs1265883	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	1q23.2	SLAMF6	rs1265883-C	0.1	2E-18		1.34	[1.25-1.43]	Illumina [8019905] (imputed)	N
1809	chr1	160513392	160513392	rs10527741	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs10527741-T	0.6511	7E-10		0.0728	[0.05-0.096] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1809	chr1	160513392	160513392	rs10527741	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs10527741-T	0.2972	1E-79		0.3313	[0.3-0.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1809	chr1	160513392	160513392	rs10527741	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs10527741-T	0.2957	2E-17		0.1485	[0.11-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1809	chr1	160513392	160513392	rs10527741	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs10527741-T	0.6589	1E-10		0.0656	[0.046-0.086] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1809	chr1	160513392	160513392	rs10527741	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs10527741-T	0.3005	1E-155		0.3204	[0.3-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1809	chr1	160516307	160516308	rs6427528	23555300	Cui J	2013-03-28	PLoS Genet	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	733 European ancestry cases	139 European ancestry cases, 151 Japanese ancestry cases	1q23.3	CD84	rs6427528-A	0.08	2E-6	(Etanercept, EA)			Illumina [~ 2000000] (imputed)	N
1810	chr1	160567497	160567498	rs114547897	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	CD48	rs114547897-T	0.98609375	5E-19	(CD48, 3292_75_1)	0.9194563	[0.72-1.12] unit increase	Illumina [> 1000000] (imputed)	N
1810	chr1	160582247	160582248	rs11265449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q23.3		rs11265449-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1810	chr1	160584997	160585003	rs10556717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q23.3	SLAMF1	rs10556717-G	0.505674	4E-13		0.01616421	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr1	160584997	160585003	rs10556717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q23.3	SLAMF1	rs10556717-G	0.505654	3E-13		0.01626192	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr1	160584997	160584997	rs755587908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q23.3	NR	rs755587908-D	0.505297	8E-15		0.015947	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1810	chr1	160590764	160590765	rs164283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q23.3		rs164283-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1810	chr1	160597902	160597903	rs12733256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs12733256-G	0.361306	7E-11				Affymetrix, Illumina [19872809] (imputed)	N
1810	chr1	160612950	160612951	rs13374761	31985465	Chen SD	2020-01-20	J Alzheimers Dis	Genome-Wide Association Study Identifies SLAMF1 Affecting the Rate of Memory Decline.	Memory decline	709 European ancestry individuals	NA	1q23.3	SLAMF1	rs13374761-?		4E-8		0.01	[NR] unit increase	Illumina [1197412]	N
1810	chr1	160625850	160625851	rs11583732	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q23.3	Intergenic	rs11583732-G	NR	1E-6		0.017914	[0.011-0.025] unit decrease	Illumina [13519193] (imputed)	N
1810	chr1	160625850	160625851	rs11583732	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q23.3	Intergenic	rs11583732-G	NR	9E-7		0.0163733	[0.0098-0.0229] unit decrease	Illumina [13520550] (imputed)	N
1810	chr1	160628859	160628860	rs187740691	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1q23.3		rs187740691-A	0.00122	3E-7		0.50006	[0.31-0.69] unit decrease	Affymetrix [15580782] (imputed)	N
1810	chr1	160630142	160630143	rs11265461	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q23.3	Intergenic	rs11265461-T	NR	2E-6	(women)	0.0225342	[0.013-0.032] unit increase	Illumina [13520550] (imputed)	N
1810	chr1	160630142	160630143	rs11265461	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q23.3	SLAMF1, CD48	rs11265461-T	0.644	2E-8		0.0216092	[0.014-0.029] unit increase	Illumina [13520550] (imputed)	N
1810	chr1	160630142	160630143	rs11265461	22479419	Liou YJ	2012-03-27	PLoS One	Genome-wide association study of treatment refractory schizophrenia in Han Chinese.	Schizophrenia (treatment resistant)	522 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	273 Han Chinese ancestry cases	1q23.3	SLAMF1	rs11265461-C	0.41	2E-7		1.45	[1.26-1.67]	Affymetrix [694436]	N
1810	chr1	160634587	160634588	rs6427540	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q23.3	SLAMF1	rs6427540-C	NR	1E-9		1.106	NR	Affymetrix, Illumina [8278136] (imputed)	N
1810	chr1	160643110	160643111	rs3795324	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	1q23.3	SLAMF1, SLAMF7, CD	rs3795324-A	0.82	9E-7		0.15	[0.089-0.211] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1810	chr1	160646033	160646034	rs140833109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD48	5,366 Icelandic ancestry individuals	NA	1q23.3		rs140833109-T	0.01079	9E-35		1.09135	[0.92-1.27] unit decrease	Illumina [7506463] (imputed)	N
1810	chr1	160675268	160675269	rs12124234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD48	5,366 Icelandic ancestry individuals	NA	1q23.3		rs12124234-C	0.4294	1E-15		0.148866	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1810	chr1	160675268	160675269	rs12124234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	CD48	rs12124234-C	0.405	1E-25	(CD48 antigen, CD48.3292.75.1)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1810	chr1	160689144	160689145	rs184772	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs184772-A	0.05575	5E-13	(MYO1B)	0.08571	NR unit increase	Illumina [1671387] (imputed)	N
1811	chr1	160701005	160701006	rs3845628	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLAMF7	5,364 Icelandic ancestry individuals	NA	1q23.3		rs3845628-G	0.2478	3E-44		0.298944	[0.26-0.34] unit decrease	Illumina [7506463] (imputed)	N
1811	chr1	160703964	160703965	rs983494	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q23.3	CD48	rs983494-G	NR	6E-16		1.0875	NR	Affymetrix, Illumina [8278136] (imputed)	N
1811	chr1	160711476	160711477	rs3766370	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	1q23.3	SLAMF7	rs3766370-T	0.3276	4E-9		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
1811	chr1	160711803	160711804	rs35967351	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs35967351-T	0.33	2E-208	(SLAM family member 7, SLAMF7.5487.7.3)	0.72	[0.68-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
1811	chr1	160711803	160711804	rs35967351	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q23.3	SLAMF7	rs35967351-A	0.68	4E-11		1.09		Illumina [161311]	N
1811	chr1	160720073	160720074	rs11581248	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q23.3	NR	rs11581248-?	NR	1E-40	(SLAF7)			Illumina [~ 4000000] (imputed)	N
1811	chr1	160720073	160720074	rs11581248	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	SLAMF7	rs11581248-C	0.8953125	4E-208	(SLAMF7, 5487_7_3)	1.1715065	[1.1-1.24] unit increase	Illumina [> 1000000] (imputed)	N
1811	chr1	160720073	160720074	rs11581248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	SLAMF7	rs11581248-T	0.142	2E-397	(SLAM family member 7, SLAMF7.5487.7.3)	1.26	[1.2-1.32] unit decrease	Affymetrix [10572788] (imputed)	N
1811	chr1	160722549	160722550	rs489286	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	SLAMF7	rs489286-A	0.3458835	2E-57	(SLAM family member 7)	0.6907	[0.61-0.77] unit decrease	Affymetrix [509946]	N
1811	chr1	160743748	160743749	rs12068654	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	1q23.3	intergenic	rs12068654-T	0.885	5E-6		3.23	[2.06-6.93]	Affymetrix [556045]	N
1811	chr1	160746075	160746076	rs576523	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	1q23.3	intergenic	rs576523-?	NR	2E-7				NR [~ 2000000]	N
1811	chr1	160762783	160762784	rs12128261	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	LY9	rs12128261-G	0.217	7E-16	(T-lymphocyte surface antigen Ly-9, LY9.3324.51.1)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1811	chr1	160764565	160764566	rs6659569	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LY9	5,361 Icelandic ancestry individuals	NA	1q23.3		rs6659569-C	0.3118	4E-51		0.295838	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
1811	chr1	160767736	160767737	rs540254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	NR	rs540254-T	0.68328125	6E-31	(SLAMF7, 5487_7_3)	0.30655774	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1811	chr1	160767736	160767737	rs540254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	NR	rs540254-T	0.68328125	5E-34	(LY9, 3324_51_1)	0.3174127	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1811	chr1	160767736	160767737	rs540254	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	LY9	rs540254-C	0.3532663	8E-20	(EA, T-lymphocyte surface antigen Ly-9)	0.4173	[0.33-0.51] unit increase	Affymetrix [509946]	N
1811	chr1	160788130	160788131	rs3817407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q23.3	LY9	rs3817407-C	0.2199	2E-11		0.02876859	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1811	chr1	160791410	160791411	rs571841	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	1q23.3		rs571841-C	0.576	6E-14				Affymetrix [10369434] (imputed)	N
1811	chr1	160791410	160791411	rs571841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.3	LY9	rs571841-T	0.425504	4E-18		0.019399447	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr1	160791777	160791778	rs2027015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q23.3		rs2027015-A	NR	3E-26		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1811	chr1	160791891	160791892	rs494091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.3	LY9	rs494091-C	0.424771	5E-39		0.02914692	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr1	160791891	160791892	rs494091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs494091-C	0.477482	2E-43				Affymetrix, Illumina [23472807] (imputed)	N
1811	chr1	160791891	160791892	rs494091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q23.3	NR	rs494091-C	0.425556	6E-46		0.02706	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1811	chr1	160794455	160794456	rs556810	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1q23.3		rs556810-A	0.578	1E-18				Affymetrix [10369434] (imputed)	N
1811	chr1	160794496	160794497	rs504848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q23.3		rs504848-C	0.578	2E-14				Affymetrix [10369434] (imputed)	N
1811	chr1	160794496	160794497	rs504848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q23.3	LY9	rs504848-T	0.423	3E-11		0.02423365	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1811	chr1	160798208	160798209	rs569911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.3	CD244, LY9	rs569911-C	0.445731	6E-9		0.012906876	[0.0086-0.0172] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr1	160811373	160811374	rs115868021	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD244	5,365 Icelandic ancestry individuals	NA	1q23.3		rs115868021-G	0.01538	3E-22		0.73577	[0.59-0.88] unit decrease	Illumina [7506463] (imputed)	N
1811	chr1	160811373	160811374	rs115868021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q23.3	CD244	rs115868021-G	0.00562399999999996	3E-10		0.092719056	[0.064-0.122] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr1	160811373	160811374	rs115868021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.3	CD244	rs115868021-G	0.00561999999999996	3E-11		0.09809881	[0.069-0.127] unit decrease	Affymetrix [93095623] (imputed)	N
1811	chr1	160816697	160816698	rs7553511	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs7553511-T	0.0341	1E-11		0.2119	[0.15-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1812	chr1	160830267	160830268	rs4656940	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1q23.3	CD244, ITLN1	rs4656940-A	0.801	6E-7		1.15	[1.09-1.21]	Affymetrix, Illumina [953241] (imputed)	N
1812	chr1	160845635	160845636	rs11578770	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	ITLN1, CD244, RP11-544M22.1, RP11-312J18.6	rs11578770-T	0.09343434	8E-23	(EA, SLAM family member 7)	0.7344	[0.59-0.88] unit decrease	Affymetrix [509946]	N
1812	chr1	160846283	160846284	rs1333062	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q23.3	ITLN1	rs1333062-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
1812	chr1	160846933	160846934	rs34067571	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Omentin plasma levels	400 French ancestry individuals	NA	1q23.3		rs34067571-A	NR	9E-23		0.303	[0.26-0.35] ng/mL increase	Illumina [5201092] (imputed)	N
1812	chr1	160852045	160852046	rs2274910	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q23.3	ITLN1	rs2274910-C	0.68	1E-9		1.14	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1812	chr1	160854525	160854526	rs2297559	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs2297559-?	NR	2E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1812	chr1	160856963	160856964	rs4656958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q23.3	ITLN1, ITLN2	rs4656958-?		2E-8				Illumina [9725440] (imputed)	N
1812	chr1	160856963	160856964	rs4656958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q23.3	ITLN1, ITLN2	rs4656958-?		6E-7				Illumina [9560910] (imputed)	N
1812	chr1	160856963	160856964	rs4656958	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs4656958-G	0.68	3E-9	(EA)	1.0859073		Affymetrix, Illumina [~ 9000000] (imputed)	N
1812	chr1	160856963	160856964	rs4656958	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs4656958-G	0.68	5E-7	(EA)	1.0694069	[1.04-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1812	chr1	160856963	160856964	rs4656958	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q23.3	CD244, ITLN1, CD48, SLAMF1, F11R, USF1, SLAMF7, ARHGAP30	rs4656958-G	0.686	7E-9		1.061	[1.029-1.094]	Affymetrix, Illumina [1230000] (imputed)	N
1812	chr1	160865223	160865224	rs192170963	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs192170963-C	0.004	1E-17	(SLAM family member 7, SLAMF7.5487.7.3)	1.86	[1.43-2.29] unit increase	Affymetrix [10572788] (imputed)	N
1812	chr1	160866013	160866014	rs11803659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLAMF7	5,364 Icelandic ancestry individuals	NA	1q23.3		rs11803659-T	0.01406	2E-24		0.823729	[0.67-0.98] unit increase	Illumina [7506463] (imputed)	N
1812	chr1	160878425	160878426	rs112233273	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	1q23.3	NR	rs112233273-A	0.007	1E-6		5.75	[2.84-11.64]	Illumina [7959153] (imputed)	N
1812	chr1	160908840	160908841	rs12567563	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.3	NR	rs12567563-T	0.8642	1E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1813	chr1	161013120	161013121	rs2516839	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs2516839-?	NR	2E-23		0.02494799	[0.02-0.03] unit increase	Illumina [30613845] (imputed)	N
1813	chr1	161013120	161013121	rs2516839	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q23.3	USF1	rs2516839-T	0.6174	2E-10		0.02342474	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1813	chr1	161019039	161019040	rs3813609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q23.3		rs3813609-C	NR	7E-16		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1813	chr1	161019039	161019040	rs3813609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.3	ARHGAP30	rs3813609-C	0.617826	1E-12		0.016478676	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1813	chr1	161019039	161019040	rs3813609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.3	ARHGAP30	rs3813609-G	0.382208	2E-22		0.022081848	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1813	chr1	161019039	161019040	rs3813609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q23.3	NR	rs3813609-C	0.615254	2E-26		0.020424	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1813	chr1	161026489	161026490	rs12130871	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q23.3	ARHGAP30, USF1, PVRL4, F11R, TSTD1, KLHDC9	rs12130871-G	NR	4E-6	(sleep onset, weekdays)	0.2138	[0.12-0.3] unit increase	Affymetrix [7141204] (imputed)	N
1813	chr1	161033603	161033604	rs12135996	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q23.3	ARHGAP30, AL591806.1, PVRL4, USF1, F11R, TSTD1	rs12135996-A	NR	7E-6	(mid-sleep time)	0.1763	[0.1-0.253] unit increase	Affymetrix [7141204] (imputed)	N
1814	chr1	161087999	161088000	rs76502631	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs76502631-A	0.01916	5E-10	(NIT1)	0.04308	NR unit decrease	Illumina [1671387] (imputed)	N
1814	chr1	161128643	161128644	rs79923112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UFM1	5,365 Icelandic ancestry individuals	NA	1q23.3		rs79923112-C	0.01255	7E-13		0.597823	[0.43-0.76] unit increase	Illumina [7506463] (imputed)	N
1814	chr1	161136319	161136320	rs115158839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115158839-T	NR	5E-11		0.0575	[0.04-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr1	161136319	161136320	rs115158839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115158839-T	NR	2E-11		0.0589	[0.042-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr1	161136842	161136843	rs2301287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q23.3	Intergenic	rs2301287-C	0.6247	3E-9		0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1814	chr1	161155391	161155392	rs4575098	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or waist-hip ratio (pleiotropy)	649,649 individuals with waist-hip ratio measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	1q23.3		rs4575098-A	0.22	4E-13				NR [NR]	N
1814	chr1	161155391	161155392	rs4575098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.3	ADAMTS4	rs4575098-A	0.235234	7E-21		0.024938678	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1814	chr1	161155391	161155392	rs4575098	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs4575098-?	NR	3E-7		0.01614449	[0.01-0.0223] unit increase	Illumina [30613845] (imputed)	N
1814	chr1	161155391	161155392	rs4575098	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	1q23.3	ADAMTS4	rs4575098-A	NR	7E-8		5.394	NR z-score increase	Affymetrix [10847151] (imputed)	N
1814	chr1	161155391	161155392	rs4575098	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	1q23.3	ADAMTS4	rs4575098-A	0.24	2E-10		6.36	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1814	chr1	161155391	161155392	rs4575098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q23.3	ADAMTS4	rs4575098-A	0.2356	6E-11		0.02748434	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1814	chr1	161159146	161159147	rs4233366	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	1q23.3	B4GALT3, ADAMTS4	rs4233366-?	NR	5E-15		1.09	[1.067-1.114]	Illumina [13747813] (imputed)	N
1814	chr1	161163036	161163037	rs4233367	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q23.3	ADAMTS4	rs4233367-T	0.392031	5E-8		0.0106351	[0.0068-0.0145] unit decrease	Affymetrix [NR] (imputed)	N
1814	chr1	161167980	161167981	rs61747494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61747494-T	NR	3E-17		0.192	[0.15-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr1	161167980	161167981	rs61747494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61747494-T	NR	2E-20		0.21	[0.17-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1814	chr1	161168003	161168004	rs33941127	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs33941127-T	0.23148	7E-9		0.1955	[0.13-0.26] unit increase	Illumina [17914520] (imputed)	N
1814	chr1	161168003	161168004	rs33941127	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q23.3	NDUFS2, ADAMTS4, FCER1G	rs33941127-T	0.2113	1E-9				Affymetrix [15688218] (imputed)	N
1814	chr1	161168188	161168189	rs34448954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q23.3		rs34448954-T	NR	2E-10		0.0179	[0.012-0.023] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1814	chr1	161168188	161168189	rs34448954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q23.3	ADAMTS4	rs34448954-T	0.106449	5E-9		0.020941613	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161168188	161168189	rs34448954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q23.3	ADAMTS4	rs34448954-T	0.106486	9E-16		0.02879192	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161168188	161168189	rs34448954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q23.3	NR	rs34448954-T	0.106374	4E-15		0.025253	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1814	chr1	161168188	161168189	rs34448954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q23.3		rs34448954-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1814	chr1	161182207	161182208	rs11576415	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q23.3	NDUFS2	rs11576415-G	0.1008	2E-10		0.03765136	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1814	chr1	161184874	161184875	rs11587213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.3	FCER1G	rs11587213-G	0.183262	2E-11		0.019110652	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161184874	161184875	rs11587213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs11587213-G	0.171643	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
1814	chr1	161184874	161184875	rs11587213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q23.3	NR	rs11587213-G	0.181859	3E-13		0.017119	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1814	chr1	161184874	161184875	rs11587213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q23.3	NR	rs11587213-G	0.182651	7E-12		0.017046	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1q23.3		rs2070901-T	NR	3E-9		0.0531	[0.035-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1q23.3		rs2070901-T	NR	4E-10		0.0469	[0.032-0.062] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on granulocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs2070901-T	0.28344	6E-9		0.173	[0.11-0.23] unit increase	Illumina [18030748] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q23.3	FCER1G	rs2070901-T	0.28	7E-16				NR [> 9500000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q23.3	FCER1G	rs2070901-T	0.275583	4E-12		1.0477369	[1.03405413981002-1.06160062161201]	NR [9572556] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q23.3	NR	rs2070901-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q23.3	NR	rs2070901-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q23.3	ADAMTS4, FCER1G, NDUFS2	rs2070901-T	0.270154	2E-8		1.03959	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q23.3	NR	rs2070901-T	0.2699	7E-13		1.049	[1.036-1.062]	Affymetrix [15688218] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	1q23.3	NDUFS2, FCER1G	rs2070901-T	0.2697	4E-10		1.081	[1.056-1.107]	Affymetrix [15688218] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q23.3	NR	rs2070901-T	0.2699	6E-12		1.043	[1.031-1.056]	Affymetrix [15688218] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	1q23.3	NDUFS2, FCER1G	rs2070901-T	0.268	1E-6		1.054	[1.03-1.08]	Affymetrix [9000000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q23.3	NDUFS2, FCER1G	rs2070901-?	NR	3E-32		1.1	[1.08-1.12]	Affymetrix [9000000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q23.3	NDUFS2, FCER1G	rs2070901-T	NR	9E-12		1.054	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q23.3		rs2070901-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q23.3	NDUFS2, FCER1G	rs2070901-T	0.26	1E-11		1.039	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1814	chr1	161185057	161185058	rs2070901	28449029	Munz M	2017-04-25	Hum Mol Genet	A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis.	Aggressive periodontitis	851 European ancestry cases, 6,836 European ancestry controls	223 cases, up to 564 controls	1q23.3	FCER1G	rs2070901-T	0.24	4E-6		1.29	[1.16-1.44]	Illumina [at least 5870152] (imputed)	N
1814	chr1	161186302	161186303	rs12094497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.3	FCER1G	rs12094497-A	0.104249	2E-12		0.025504854	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161186302	161186303	rs12094497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs12094497-A	0.0907128	3E-14				Affymetrix, Illumina [19872809] (imputed)	N
1814	chr1	161186302	161186303	rs12094497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q23.3	FCER1G	rs12094497-A	0.1053	1E-16		0.04849644	[0.037-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1814	chr1	161186312	161186313	rs4379692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCGR3B	5,363 Icelandic ancestry individuals	NA	1q23.3		rs4379692-T	0.3749	4E-6		0.0899902	[0.052-0.128] unit decrease	Illumina [7506463] (imputed)	N
1814	chr1	161186312	161186313	rs4379692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q23.3		rs4379692-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1814	chr1	161187664	161187665	rs2070902	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	1q23.3	AL590714.1, FCER1G	rs2070902-T	0.2524	6E-19		1.05	[1.04-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1814	chr1	161187664	161187665	rs2070902	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	1q23.3	FCER1G	rs2070902-?	NR	1E-9		1.055	[1.037-1.073]	Illumina [12845910] (imputed)	N
1814	chr1	161188892	161188893	rs3557	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GP6	5,361 Icelandic ancestry individuals	NA	1q23.3		rs3557-G	0.1091	2E-19		0.269493	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
1814	chr1	161188892	161188893	rs3557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q23.3		rs3557-G	NR	2E-10		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.3	FCER1G	rs3557-G	0.090579	1E-47		0.057000227	[0.049-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q23.3	FCER1G	rs3557-G	0.090576	2E-10		0.025004698	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.3	FCER1G	rs3557-G	0.090573	6E-40		0.051755775	[0.044-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs3557-G	0.0724204	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q23.3	NR	rs3557-G	0.089754	2E-14		0.024652	[0.018-0.031] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs3557-T	0.910988	2E-49				Affymetrix, Illumina [17210439] (imputed)	N
1814	chr1	161188892	161188893	rs3557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q23.3	NR	rs3557-T	0.909369	7E-51		0.05031	[0.044-0.057] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1814	chr1	161188892	161188893	rs3557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q23.3		rs3557-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1814	chr1	161188892	161188893	rs3557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q23.3	FCER1G	rs3557-G	0.0911	2E-13		0.04672268	[0.034-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1814	chr1	161188935	161188936	rs11421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.3	FCER1G	rs11421-C	0.14855	3E-11		0.020883936	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161188935	161188936	rs11421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.3	FCER1G	rs11421-C	0.148544	2E-11		0.020891948	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1814	chr1	161190249	161190250	rs4503368	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	1q23.3	USF1	rs4503368-C	0.53	3E-11	(Phospholipids in very large HDL)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	3E-17		0.0350453	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	1E-11		0.0275707	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-28		0.0423312	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	7E-9		0.0216878	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q23.3		rs5082-G	0.379285	1E-19		0.035555	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	6E-11		0.0278705	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	9E-28		0.0418478	[0.034-0.049] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q23.3		rs5082-G	0.379285	4E-12		0.0262579	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	1E-33		0.0487631	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-25		0.0412514	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	7E-33		0.0474699	[0.04-0.055] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	6E-12		0.0256812	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-33		0.0462329	[0.039-0.054] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-12		0.0262319	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q23.3		rs5082-G	0.379285	3E-9		0.0252518	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	3E-23		0.0379444	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-10		0.0238512	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q23.3		rs5082-G	0.379285	3E-19		0.0363605	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	8E-26		0.0404103	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	9E-11		0.0243297	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1814	chr1	161193682	161193683	rs5082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1q23.3		rs5082-G	0.379253	2E-18		0.0330902	[0.026-0.04] unit increase	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	2E-31		0.0494498	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	2E-9		0.0238813	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	3E-8		0.0223522	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	1E-14		0.0320974	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	5E-32		0.0484483	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	1E-13		0.0318083	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	9E-31		0.0486872	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	3E-12		0.0277679	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	2E-12		0.0292809	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	1E-30		0.0490532	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	3E-9		0.0238267	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	2E-8		0.022769	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	5E-8		0.022631	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	1E-39		0.0562586	[0.048-0.065] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	3E-13		0.0292566	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1814	chr1	161194640	161194641	rs4656292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1q23.3		rs4656292-A	0.380433	2E-33		0.0514133	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
1814	chr1	161200486	161200487	rs4073054	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1q23.3	NR1I3	rs4073054-A	0.63	4E-19	(X-10395)	0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1814	chr1	161203226	161203227	rs2502815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q23.3		rs2502815-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1814	chr1	161204449	161204450	rs117631668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1q23.3		rs117631668-G	0.036554	3E-10		0.0597602	[0.041-0.078] unit decrease	Illumina [13476165] (imputed)	N
1815	chr1	161229469	161229470	rs6662338	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	1q23.3	NR	rs6662338-A	0.0217	7E-7	(dominant, male)	3.6020386	[2.16939429096245-5.98078601523667]	Affymetrix, Illumina [6131010] (imputed)	N
1815	chr1	161261241	161261242	rs76072566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs76072566-T	NR	1E-32		0.0642	[0.054-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr1	161261241	161261242	rs76072566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs76072566-T	NR	1E-33		0.0651	[0.055-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr1	161266997	161266998	rs55964795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs55964795-G	NR	2E-9		0.0527	[0.036-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr1	161266997	161266998	rs55964795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs55964795-G	NR	7E-15		0.068	[0.051-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1815	chr1	161270919	161270920	rs753985050	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q23.3	MPZ	rs753985050-A	0.9989	4E-7		1.9867	[1.22-2.75] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1815	chr1	161272440	161272441	rs4657015	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q23.3	LOC642502, PCP4L1, MPZ, SDHC	rs4657015-G	0.58	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1815	chr1	161282383	161282384	rs4131826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs4131826-C	NR	2E-9		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1815	chr1	161321997	161321998	rs12140361	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	1q23.3	SDHC	rs12140361-?	NR	3E-6	(adjusted for dose, GFR & AST)	7.098	unit increase (EA, Australian cohort)	Illumina [610255]	N
1816	chr1	161388412	161388413	rs6678315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs6678315-C	NR	2E-9		0.0193	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161389722	161389723	rs111973643	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	1q23.3	NA	rs111973643-T	0.0464129	2E-6		1.525	[1.283 - 1.814]	Illumina [5397657] (imputed)	N
1816	chr1	161405052	161405053	rs72717009	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q23.3	FCGR2A	rs72717009-T	NR	2E-6		0.119221	[0.071-0.168] unit increase	Illumina [8380626] (imputed)	N
1816	chr1	161405052	161405053	rs72717009	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q23.3	FCGR2A	rs72717009-T	0.12	1E-6	(EA)	0.12237	[0.073-0.172] unit increase	Illumina [8380626] (imputed)	N
1816	chr1	161405052	161405053	rs72717009	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.3	FCGR2A	rs72717009-T	0.12	5E-7	(EA)	1.12	[1.07-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1816	chr1	161405052	161405053	rs72717009	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q23.3	FCGR2A	rs72717009-T	0.1	1E-7		1.13	[1.08-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1816	chr1	161409804	161409805	rs79106728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs79106728-A	NR	5E-11		0.0336	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161409804	161409805	rs79106728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs79106728-A	NR	3E-13		0.0373	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161444368	161444369	rs12120358	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.3	NR	rs12120358-A	0.893	3E-11		0.842	[0.79-0.89]	Illumina [11270530] (imputed)	N
1816	chr1	161450152	161450153	rs61446694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61446694-A	NR	5E-11		0.0336	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161450152	161450153	rs61446694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61446694-A	NR	1E-11		0.0347	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161452865	161452866	rs71639066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs71639066-T	NR	2E-9		0.0404	[0.027-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161457022	161457024	rs147609040	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147609040-G	0.16026	2E-8		0.2015	[0.13-0.27] unit increase	Illumina [18342043] (imputed)	N
1816	chr1	161463586	161463587	rs7535475	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	FCGR2A	rs7535475-C	0.37703125	6E-514	(FCGR2A, 3309_2_2)	1.0405178	[1.01-1.08] unit decrease	Illumina [> 1000000] (imputed)	N
1816	chr1	161463586	161463587	rs7535475	24039173	McGrath LM	2013-09-13	Am J Med Genet B Neuropsychiatr Genet	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NA	1q23.3	FCGR2A, FCGR3A, HSPA6	rs7535475-?	NR	3E-6	(MCS)			Affymetrix [1633452] (imputed)	N
1816	chr1	161463935	161463936	rs115944227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115944227-G	NR	2E-9		0.0341	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1816	chr1	161469053	161469054	rs6658353	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q23.3	FCGR2A	rs6658353-C	0.5011	6E-12		0.065	[0.047-0.083] unit increase	NR [7784415] (imputed)	N
1816	chr1	161470041	161470042	rs7551957	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	FCGR2A, RP11-25K21.6	rs7551957-C	0.4259073	2E-111	(Low affinity immunoglobulin gamma Fc region receptor II-a/b)	0.8857	[0.82-0.95] unit increase	Affymetrix [509946]	N
1816	chr1	161470273	161470274	rs111994823	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.3	NR	rs111994823-T	0.964	3E-11		1.409	[1.31-1.51]	Illumina [11270530] (imputed)	N
1816	chr1	161472157	161472158	rs10800309	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs10800309-?	NR	4E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1816	chr1	161472157	161472158	rs10800309	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs10800309-?	NR	6E-37	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1816	chr1	161472157	161472158	rs10800309	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q23.3	FCGR2A, FCGR2C	rs10800309-A	NR	3E-9		1.23	[NR]	Illumina [266047]	N
1816	chr1	161472788	161472789	rs10800314	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q23.3	FCGR2A	rs10800314-?	NR	1E-32	(subset analysis)			Illumina [130052]	N
1816	chr1	161473872	161473873	rs61802846	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q23.3	FCGR2A	rs61802846-?	NR	1E-9	(subset analysis)			Illumina [130052]	N
1816	chr1	161475749	161475750	rs10494360	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1q23.3	FCGR2A	rs10494360-A	0.13	3E-7		1.14	[1.08-1.20]	Illumina [133816] (imputed)	N
1816	chr1	161476204	161476205	rs9427398	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q23.3	FCGR2A	rs9427398-G		7E-21		0.031	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1816	chr1	161478809	161478810	rs6671847	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	1q23.3	FCGR2A	rs6671847-A	0.508	3E-9	(EA)	0.7	[0.6-0.8]	Illumina [5784964] (imputed)	N
1816	chr1	161478809	161478810	rs6671847	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1q23.3	NR	rs6671847-G	0.49	2E-12		1.13	[NR]	NR [8546065] (imputed)	N
1816	chr1	161478809	161478810	rs6671847	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs6671847-A	0.29902	5E-11		0.1769	[0.12-0.23] unit increase	Illumina [18213821] (imputed)	N
1816	chr1	161478809	161478810	rs6671847	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q23.3	FCGR2A	rs6671847-A		1E-12		1.2	[NR]	Illumina [> 644674] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q23.3	NR	rs4657041-T	0.464	2E-23	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on Plasma Blast-Plasma Cell	3,651 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33475	1E-8		0.1484	[0.098-0.199] unit decrease	Illumina [18236544] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33447	2E-8		0.1521	[0.099-0.205] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33447	1E-10		0.1739	[0.12-0.23] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD27- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33447	2E-8		0.1503	[0.098-0.203] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33447	4E-8		0.1479	[0.095-0.201] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4657041-C	0.33429	2E-8		0.1522	[0.099-0.205] unit decrease	Illumina [18238081] (imputed)	N
1816	chr1	161478858	161478859	rs4657041	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs4657041-C	0.532	8E-426	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	0.87	[0.83-0.91] unit increase	Affymetrix [10572788] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1q23.3		rs1801274-G	NR	2E-16		0.16	[0.12-0.2] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32673	4E-8		0.1446	[0.093-0.196] unit increase	Illumina [18213821] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32621	4E-54		0.41	[0.36-0.46] unit decrease	Illumina [18203344] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16+ monocyte	3,582 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.3268	7E-20		0.2388	[0.19-0.29] unit decrease	Illumina [18196992] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14+ CD16- monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32621	2E-64		0.4504	[0.4-0.5] unit decrease	Illumina [18203344] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14+ CD16+ monocyte	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32708	3E-69		0.4628	[0.41-0.51] unit decrease	Illumina [18198165] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32595	8E-50		0.3944	[0.34-0.45] unit increase	Illumina [18215199] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16- monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32595	1E-59		0.429	[0.38-0.48] unit increase	Illumina [18215199] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16+ monocyte	3,611 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32681	2E-48		0.3834	[0.33-0.43] unit increase	Illumina [18210047] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on monocytes	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32588	7E-84		0.5089	[0.46-0.56] unit increase	Illumina [18218967] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32646	1E-90		0.5292	[0.48-0.58] unit increase	Illumina [18212658] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32588	2E-62		0.4371	[0.39-0.49] unit increase	Illumina [18218967] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32673	2E-70		0.4646	[0.41-0.51] unit increase	Illumina [18213821] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b- %CD33dim HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33348	3E-54		0.5517	[0.48-0.62] unit decrease	Illumina [17203588] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b+ Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33348	8E-14		0.2617	[0.19-0.33] unit increase	Illumina [17203588] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b+ %CD33dim HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33348	3E-54		0.5511	[0.48-0.62] unit increase	Illumina [17203588] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b-	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32993	2E-11		0.261	[0.19-0.34] unit decrease	Illumina [16999172] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b+	1,633 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32983	4E-11		0.2575	[0.18-0.33] unit decrease	Illumina [16998601] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32511	3E-9		0.1586	[0.11-0.21] unit decrease	Illumina [18238284] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	2E-28		0.2933	[0.24-0.34] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	1E-14		0.2036	[0.15-0.26] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	3E-15		0.2111	[0.16-0.26] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	7E-17		0.2208	[0.17-0.27] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14 on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33024	1E-18		0.3379	[0.26-0.41] unit decrease	Illumina [16998734] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32091	1E-20		0.2755	[0.22-0.33] unit increase	Illumina [17914520] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32091	1E-16		0.248	[0.19-0.31] unit increase	Illumina [17914520] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on Monocytic Myeloid-Derived Suppressor Cells	1,570 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33096	5E-32		0.461	[0.39-0.54] unit increase	Illumina [16949631] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on CD33+ HLA DR+ CD14dim	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33055	1E-38		0.4941	[0.42-0.57] unit increase	Illumina [16958370] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on CD14+ monocyte	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.33034	6E-61		0.624	[0.55-0.7] unit increase	Illumina [16999305] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32091	4E-18		0.2581	[0.2-0.32] unit increase	Illumina [17914520] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	5E-12		0.1866	[0.13-0.24] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	6E-11		0.1765	[0.12-0.23] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32502	2E-11		0.1805	[0.13-0.23] unit decrease	Illumina [18238311] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.32507	4E-10		0.1694	[0.12-0.22] unit decrease	Illumina [18238340] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs1801274-G	0.3253	2E-10		0.1724	[0.12-0.23] unit decrease	Illumina [18238700] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.3	FCGR2A	rs1801274-G	0.531328	2E-18		0.019701969	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	FCGR2A	rs1801274-G	0.531311	3E-14		0.017115898	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	FCGR2A	rs1801274-G	0.533	1E-2102	(Low affinity immunoglobulin gamma Fc region receptor II-a, FCGR2A.3309.2.2)	1.24	[1.22-1.26] unit increase	Affymetrix [10572788] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q23.3	NR	rs1801274-?	NR	4E-12		0.03668	[0.026-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	28886140	Kwon YC	2017-09-08	PLoS One	Male-specific association of the FCGR2A His167Arg polymorphism with Kawasaki disease.	Kawasaki disease	165 East Asian ancestry male cases, 84 East Asian ancestry female cases, 783 East Asian ancestry male controls, 217 East Asian ancestry female controls	705 East Asian ancestry male cases, 507 East Asian ancestry female cases, 1,484 East Asian ancestry male controls, 2,818 East Asian ancestry female controls, 64 male cases, 36 female cases, 180 male controls, 67 male controls	1q23.3	FCGR2A	rs1801274-A	0.758	1E-7	(East Asian, males)	1.48	[1.28-1.71]	Illumina [NR]	N
1816	chr1	161479744	161479745	rs1801274	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q23.3	FCGR2A	rs1801274-?	NR	2E-14		1.16	[1.11-1.20]	Illumina [at least 5000000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1q23.3	HSPA6, FCGR3A, FCGR3B, FCGR2B, FCGR2A	rs1801274-?		2E-18				Illumina [9578670] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q23.3	HSPA6, FCGR3A, FCGR3B, FCGR2B, FCGR2A	rs1801274-?		9E-14				Illumina [9725440] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q23.3	NR	rs1801274-G	NR	9E-36	(Low affinity immunoglobulin gamma Fc region receptor II-a/b)			Illumina [514227]	N
1816	chr1	161479744	161479745	rs1801274	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q23.3	FCGR2A	rs1801274-?	0.497	6E-11	(EA)	1.21	[NR]	NR [6344733] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	1q23.3	FCGR2A	rs1801274-?	NR	7E-6		1.35	[1.18-1.53]	Illumina [NR]	N
1816	chr1	161479744	161479745	rs1801274	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1q23.3	FCGR2A, FCGR2B, FCGR3B	rs1801274-C		1E-12		1.16	[1.11-1.21]	Illumina [644674]	N
1816	chr1	161479744	161479745	rs1801274	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs1801274-A	0.5	1E-41	(EA)	1.1863672		Affymetrix, Illumina [~ 9000000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs1801274-A	0.5	9E-36	(EA)	1.1334659		Affymetrix, Illumina [~ 9000000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q23.3	NR	rs1801274-A	0.5	9E-11	(EA)	1.0816648	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	1q23.3	FCGR2A	rs1801274-?	NR	9E-6				Illumina [NR]	N
1816	chr1	161479744	161479745	rs1801274	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q23.3	FCGR2A	rs1801274-T	0.476	1E-9	(EA)	1.12		Illumina [128935]	N
1816	chr1	161479744	161479745	rs1801274	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q23.3	FCGR2A	rs1801274-T	0.476	1E-9		1.11		Illumina [128935]	N
1816	chr1	161479744	161479745	rs1801274	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q23.3	FCGR2A, FCGR3A, FCGR2B, HSPA6, FCGR3B, FCRLA	rs1801274-A	0.509	2E-38		1.124	[1.092-1.157]	Affymetrix, Illumina [1230000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	22081228	Khor CC	2011-11-13	Nat Genet	Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.	Kawasaki disease	405 European ancestry cases, 6,252 European ancestry controls	605 European ancestry cases and 1,349 European ancestry controls from 740 families, 135 cases and 270 controls from 135 families, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls	1q23.3	FCGR2A	rs1801274-A	0.47	7E-11		1.32	[1.22-1.44]	Illumina [494236]	N
1816	chr1	161479744	161479745	rs1801274	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q23.3	FCGR2A, FCGR2B, HSPA6	rs1801274-A	0.51	2E-20		1.21	[1.16-1.26]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1816	chr1	161479744	161479745	rs1801274	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	1q23.3	FCGR2A	rs1801274-?	0.78	2E-12		1.59	[1.39-1.82]	Illumina [513923]	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3		rs373579-A	NR	2E-7		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3		rs373579-A	0.866	2E-7	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3	NR	rs373579-A	NR	1E-11		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3		rs373579-A	NR	6E-7		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3		rs373579-A	NR	5E-7	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483483	161483484	rs373579	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q23.3	NR	rs373579-A	NR	4E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1817	chr1	161483655	161483656	rs56157533	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16 on CD14- CD16+ monocyte	3,620 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs56157533-C	0.77099	7E-411		1.05	[1-1.1] unit increase	Illumina [18212540] (imputed)	N
1817	chr1	161484209	161484210	rs368433	23652523	Mayerle J	2013-05-08	JAMA	Identification of genetic loci associated with Helicobacter pylori serologic status.	Helicobacter pylori serologic status	2,623 European ancestry high titer cases, 7,862 European ancestry low or no titer controls	NA	1q23.3	FCGR2A, HSPA6	rs368433-C	0.84	2E-8		1.37	[1.23-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1817	chr1	161485258	161485259	rs17400517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1q23.3	FCGR2A, RP11-25K21.6	rs17400517-T	0.1144	3E-9		0.03329163	[0.022-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161487822	161487823	rs146883516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs146883516-C	NR	8E-11		0.1609	[0.11-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr1	161488016	161488017	rs10919033	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919033-C	0.21061	7E-15		0.259	[0.19-0.32] unit decrease	Illumina [17967059] (imputed)	N
1817	chr1	161491342	161491343	rs114414096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114414096-A	NR	8E-10		0.0263	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr1	161491342	161491343	rs114414096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs114414096-A	NR	4E-13		0.0298	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr1	161492174	161492175	rs9427401	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs9427401-G	0.23139	2E-20		0.2725	[0.22-0.33] unit decrease	Illumina [18218967] (imputed)	N
1817	chr1	161492174	161492175	rs9427401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q23.3		rs9427401-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1817	chr1	161492586	161492587	rs12129787	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1q23.3	FCGR2A	rs12129787-?	NR	1E-9		1.22	[1.14-1.29]	Illumina [at least 5000000] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q23.3		rs9427403-C	NR	8E-15		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs9427403-C	0.3669	6E-13		0.2011	[0.15-0.26] unit decrease	Illumina [17967059] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs9427403-C	0.36823	4E-8		0.1461	[0.094-0.198] unit decrease	Illumina [18351549] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs9427403-C	0.36823	7E-9		0.1555	[0.1-0.21] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- CD86+ myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs9427403-C	0.36823	2E-9		0.1647	[0.11-0.22] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161494321	161494322	rs9427403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.3		rs9427403-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1817	chr1	161497376	161497377	rs2446630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q23.3		rs2446630-T	NR	1E-17		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1817	chr1	161500129	161500130	rs2099684	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCGR3B	5,363 Icelandic ancestry individuals	NA	1q23.3		rs2099684-G	0.3066	2E-84		0.388425	[0.35-0.43] unit increase	Illumina [7506463] (imputed)	N
1817	chr1	161500129	161500130	rs2099684	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	1q23.3	FCGR3A	rs2099684-C	0.26	7E-12		1.54	[1.36-1.75]	Illumina [5878075] (imputed)	N
1817	chr1	161500129	161500130	rs2099684	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	FCGR3B	rs2099684-A	0.6953125	6E-53	(FCGR3B, 3311_27_1)	0.40763593	[0.36-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
1817	chr1	161500874	161500875	rs10919347	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919347-C	0.1876	3E-12		0.254	[0.18-0.32] unit decrease	Illumina [17919786] (imputed)	N
1817	chr1	161500974	161500975	rs6700241	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q23.3	HSPA6, FCGR3A	rs6700241-A	0.8	8E-11		6.5	z-score increase	Affymetrix [4312306] (imputed)	N
1817	chr1	161500974	161500975	rs6700241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.3	RP11-25K21.6	rs6700241-G	0.20046	7E-10		0.017684601	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161502848	161502849	rs79568124	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q23.3	HSPA6	rs79568124-?	NR	8E-7	(subset analysis)			Illumina [130052]	N
1817	chr1	161507447	161507448	rs3845548	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86+ plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs3845548-T	0.23501	2E-20		0.2739	[0.22-0.33] unit decrease	Illumina [18351549] (imputed)	N
1817	chr1	161508616	161508617	rs10919543	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	1q23.3	FCGR3A	rs10919543-G	0.346	6E-6		0.055	[0.031-0.079] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
1817	chr1	161508616	161508617	rs10919543	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer %Natural Killer	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919543-G	0.54699	1E-29		0.3069	[0.25-0.36] unit decrease	Illumina [18380873] (imputed)	N
1817	chr1	161508616	161508617	rs10919543	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919543-G	0.54724	3E-8		0.1509	[0.098-0.204] unit decrease	Illumina [18030777] (imputed)	N
1817	chr1	161508616	161508617	rs10919543	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	FCGR3B	rs10919543-G	0.324	3E-67	(Low affinity immunoglobulin gamma Fc region receptor III-B, FCGR3B.3311.27.1)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
1817	chr1	161508616	161508617	rs10919543	23830517	Saruhan-Direskeneli G	2013-07-03	Am J Hum Genet	Identification of multiple genetic susceptibility loci in Takayasu arteritis.	Takayasu arteritis	305 Turkish ancestry cases, 106 European ancestry cases, 483 Turkish ancestry controls, 553 European ancestry controls	NA	1q23.3	FCGR2A, FCGR3A	rs10919543-G	0.413	6E-12		1.81		Illumina [at least 124312]	N
1817	chr1	161508762	161508763	rs10919544	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919544-C	0.5442	3E-9		0.1664	[0.11-0.22] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161508762	161508763	rs10919544	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919544-C	0.44842	9E-11		0.238	[0.17-0.31] unit increase	Illumina [16999305] (imputed)	N
1817	chr1	161508762	161508763	rs10919544	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs10919544-C	0.5473399999999999	2E-20		0.2555	[0.2-0.31] unit decrease	Illumina [18030777] (imputed)	N
1817	chr1	161508762	161508763	rs10919544	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	HSPA6, RPS23P10, RP11-25K21.6, FCGR3A	rs10919544-C	0.3760081	6E-21	(EA, Low affinity immunoglobulin gamma Fc region receptor II-a/b)	0.4144	[0.33-0.5] unit decrease	Affymetrix [509946]	N
1817	chr1	161508762	161508763	rs10919544	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	HSPA6, RPS23P10, RP11-25K21.6, FCGR3A	rs10919544-C	0.3760081	4E-28	(Low affinity immunoglobulin gamma Fc region receptor III-B)	0.4773	[0.39-0.56] unit increase	Affymetrix [509946]	N
1817	chr1	161510433	161510434	rs4082014	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs4082014-A	0.23311	5E-25		0.3029	[0.25-0.36] unit decrease	Illumina [18351549] (imputed)	N
1817	chr1	161510515	161510516	rs144126567	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16-	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs144126567-G	0.17363	6E-57		0.5108	[0.45-0.57] unit increase	Illumina [18203344] (imputed)	N
1817	chr1	161510515	161510516	rs144126567	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16- Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs144126567-G	0.17383	9E-24		0.3274	[0.26-0.39] unit increase	Illumina [18224179] (imputed)	N
1817	chr1	161510515	161510516	rs144126567	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q23.3	FCGR3A	rs144126567-C	0.925283	2E-10		0.032562	[0.023-0.043] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.5523100000000001	2E-29		0.2808	[0.23-0.33] unit decrease	Illumina [18377392] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.55	4E-10		0.1745	[0.12-0.23] unit decrease	Illumina [17967059] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86+ myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.54985	5E-29		0.2825	[0.23-0.33] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86+ myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.55011	5E-27		0.278	[0.23-0.33] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.54985	2E-33		0.3076	[0.26-0.36] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.55011	1E-36		0.3226	[0.27-0.37] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.54985	2E-30		0.2951	[0.25-0.35] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.55011	2E-33		0.3149	[0.26-0.37] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- CD86+ myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.54985	4E-54		0.3746	[0.33-0.42] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161514541	161514542	rs396991	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- CD86+ myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs396991-C	0.55011	1E-54		0.378	[0.33-0.42] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q23.3		rs55971447-T	NR	4E-15		0.0237	[0.018-0.03] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23699	6E-51		0.4802	[0.42-0.54] unit decrease	Illumina [17926605] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23707	3E-26		0.3418	[0.28-0.4] unit decrease	Illumina [17926566] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23699	1E-17		0.2761	[0.21-0.34] unit decrease	Illumina [17926605] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Dendritic Cell Absolute Count	3,374 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23568	1E-89		0.5889	[0.53-0.64] unit increase	Illumina [18332528] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte Absolute Count	3,019 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23107	6E-9		0.1884	[0.13-0.25] unit decrease	Illumina [18121986] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c+ CD62L- monocyte Absolute Count	3,017 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23089	5E-9		0.1809	[0.12-0.24] unit decrease	Illumina [18121744] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs55971447-T	0.23681	3E-37		0.4101	[0.35-0.47] unit decrease	Illumina [17919786] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q23.3	FCGR3A	rs55971447-T	0.117695	4E-17		0.029098038	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q23.3	FCGR3A	rs55971447-T	0.117698	2E-11		0.024124533	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161515325	161515326	rs55971447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q23.3	NR	rs55971447-T	0.118261	2E-27		0.031085	[0.025-0.037] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1817	chr1	161519439	161519440	rs34436026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs34436026-T	NR	1E-30		0.0748	[0.062-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161519439	161519440	rs34436026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs34436026-T	NR	1E-37		0.0832	[0.07-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161519439	161519440	rs34436026	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	FCGR2A, RP11-25K21.6, HSPA6, RPS23P10, FCGR3A	rs34436026-T	0.02309237	2E-15	(EA, Low affinity immunoglobulin gamma Fc region receptor II-a/b)	1.158	[0.88-1.44] unit increase	Affymetrix [509946]	N
1817	chr1	161520930	161520931	rs56199187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q23.3		rs56199187-T	NR	2E-16		0.0242	[0.019-0.03] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	6E-184		0.1124	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	1E-11		0.0253	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	2E-227		0.1251	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	2E-22		0.0363	[0.029-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	4E-34		0.0454	[0.038-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q23.3	NR	rs56199187-T	NR	3E-14		0.0283	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasmacytoid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs56199187-C	0.75587	2E-92		0.5887	[0.53-0.64] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs56199187-C	0.75985	2E-51		0.4759	[0.42-0.54] unit increase	Illumina [17967059] (imputed)	N
1817	chr1	161520930	161520931	rs56199187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs56199187-C	0.75587	2E-144		0.7548	[0.7-0.81] unit decrease	Illumina [18351549] (imputed)	N
1817	chr1	161525612	161525613	rs3002600	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs3002600-T	0.27837	4E-10		0.2011	[0.14-0.26] unit increase	Illumina [17926605] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24036	2E-74		0.5652	[0.51-0.62] unit decrease	Illumina [17967059] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24498	2E-112		0.6546	[0.6-0.71] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24483	8E-99		0.6258	[0.57-0.68] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer  %CD3- lymphocyte	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24748	1E-141		0.7124	[0.66-0.77] unit decrease	Illumina [18380873] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24036	4E-69		0.5493	[0.49-0.61] unit decrease	Illumina [17967059] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86+ myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24498	1E-165		0.8088	[0.75-0.86] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD86+ myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24483	4E-165		0.8089	[0.75-0.86] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.2459	1E-25		0.3323	[0.27-0.39] unit increase	Illumina [17926466] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24498	1E-165		0.8094	[0.75-0.86] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24483	9E-178		0.8232	[0.77-0.88] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24498	1E-150		0.7524	[0.7-0.81] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- CD86+ myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24498	1E-220		0.9207	[0.87-0.97] unit increase	Illumina [18342043] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- CD86+ myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24483	1E-225		0.929	[0.88-0.98] unit increase	Illumina [18351549] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16 on CD14+ CD16+ monocyte	3,617 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24581	3E-208		0.8542	[0.8-0.91] unit decrease	Illumina [18213702] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16+ monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24803	2E-113		0.6399	[0.59-0.69] unit decrease	Illumina [18224179] (imputed)	N
1817	chr1	161526396	161526397	rs71632979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16+ monocyte %monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632979-G	0.24803	1E-134		0.7013	[0.65-0.75] unit decrease	Illumina [18224179] (imputed)	N
1817	chr1	161526978	161526979	rs12405558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q23.3	FCGR3A, RP11-25K21.6	rs12405558-T	0.200859	8E-17		0.023640133	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161527017	161527018	rs4554699	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-centromere-positive)	671 European ancestry cases, 3,466 European ancestry controls, 21 African American cases, 260 African American controls	NA	1q23.3	FCGR3B, FCGR2C	rs4554699-?	NR	6E-14	(EA)			Illumina [126270]	N
1817	chr1	161527017	161527018	rs4554699	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	1q23.3	FCGR2C	rs4554699-?	NR	3E-8	(EA)			Illumina [126270]	N
1817	chr1	161527017	161527018	rs4554699	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	1q23.3	FCGR3B	rs4554699-?	NR	3E-13				Illumina [126270]	N
1817	chr1	161527017	161527018	rs4554699	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	1q23.3	FCGR2C	rs4554699-?	NR	3E-13				Illumina [126270]	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.16913	3E-20		0.3104	[0.24-0.38] unit decrease	Illumina [18213821] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16+ monocyte	3,614 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.17014	2E-18		0.2913	[0.23-0.36] unit increase	Illumina [18208887] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16+ monocyte %monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.17164	1E-64		0.5472	[0.49-0.61] unit decrease	Illumina [18224179] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16+ monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.17164	4E-46		0.4648	[0.4-0.53] unit decrease	Illumina [18224179] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16+ monocyte %monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.17164	7E-45		0.4529	[0.39-0.52] unit decrease	Illumina [18224179] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16- monocyte %monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.17164	8E-67		0.5558	[0.49-0.62] unit increase	Illumina [18224179] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.16995	6E-17		0.2753	[0.21-0.34] unit increase	Illumina [18212658] (imputed)	N
1817	chr1	161528011	161528012	rs147174426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147174426-T	0.16913	3E-16		0.2667	[0.2-0.33] unit increase	Illumina [18213821] (imputed)	N
1817	chr1	161530106	161530107	rs115827707	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs115827707-C	0.06866	9E-9		0.2911	[0.19-0.39] unit decrease	Illumina [18351549] (imputed)	N
1817	chr1	161533054	161533055	rs71632989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632989-G	0.24645	4E-82		0.5526	[0.5-0.61] unit decrease	Illumina [18212658] (imputed)	N
1817	chr1	161533054	161533055	rs71632989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632989-G	0.24769	2E-136		0.6984	[0.65-0.75] unit decrease	Illumina [18377392] (imputed)	N
1817	chr1	161533054	161533055	rs71632989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer %Natural Killer	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs71632989-G	0.24773	1E-124		0.6848	[0.63-0.74] unit decrease	Illumina [18380873] (imputed)	N
1817	chr1	161535231	161535232	rs372149781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q23.3	NR	rs372149781-G	0.11945	1E-24		0.030993	[0.025-0.037] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1817	chr1	161536130	161536131	rs332398	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q23.3	FCGR3A, FCGR2C	rs332398-?	NR	1E-6	(Hispanic)	1.44	[1.24-1.67]	Illumina [at least 5000000] (imputed)	N
1817	chr1	161536757	161536758	rs147640330	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs147640330-C	0.24451	2E-14		0.2402	[0.18-0.3] unit increase	Illumina [17967059] (imputed)	N
1817	chr1	161539518	161539519	rs533276421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.3	FCGR3A, RP11-25K21.6	rs533276421-A	0.00877899999999998	6E-16		0.11274126	[0.085-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161539518	161539519	rs533276421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	FCGR3A, RP11-25K21.6	rs533276421-A	0.00877700000000003	1E-13		0.10330297	[0.076-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161540856	161540857	rs67418890	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	1q23.3	FCGR2A, FCGR2B	rs67418890-?	NR	1E-10	(XL-HDL-CE)	0.19	[0.13-0.25] unit increase	Illumina [~ 7700000] (imputed)	N
1817	chr1	161542234	161542235	rs61801010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q23.3		rs61801010-G	NR	2E-17		0.0346	[0.027-0.043] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1817	chr1	161542234	161542235	rs61801010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q23.3		rs61801010-G	NR	4E-59		0.0635	[0.056-0.071] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1817	chr1	161542234	161542235	rs61801010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q23.3		rs61801010-G	NR	8E-24		0.0385	[0.031-0.046] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1817	chr1	161542234	161542235	rs61801010	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q23.3	FCGR2C	rs61801010-A	0.894536	2E-28		0.00748263	[0.0062-0.0088] unit decrease	Affymetrix [13995440] (imputed)	N
1817	chr1	161567066	161567067	rs61801824	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs61801824-A	0.669	2E-298	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	0.88	[0.84-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
1817	chr1	161567915	161567916	rs371656041	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	1q23.3	NR	rs371656041-T	0.987737	3E-6		0.449	[0.26-0.64] unit increase	NR [9260588] (imputed)	N
1817	chr1	161569828	161569829	rs76107698	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.3	FCGR2C	rs76107698-C	0.254	2E-30		0.788	[0.75-0.83]	Illumina [11270530] (imputed)	N
1817	chr1	161572352	161572353	rs67775399	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1q23.3	FCGR2B, FCGR2C, HSPA6	rs67775399-C	0.226599	8E-9		0.022328	[0.015-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1817	chr1	161572352	161572353	rs67775399	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q23.3	FCGR2B, FCGR2C, HSPA6	rs67775399-C	0.21879300000000002	4E-10		0.020888	[0.014-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1817	chr1	161572759	161572760	rs61801836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs61801836-C	0.739761	5E-17				Affymetrix, Illumina [24332387] (imputed)	N
1817	chr1	161575316	161575317	rs191380733	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	1q23.3		rs191380733-A	NR	1E-8		0.428	[0.28-0.57] unit increase	Affymetrix [509886] (imputed)	N
1817	chr1	161575537	161575538	rs34754216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1q23.3		rs34754216-C	0.575921	3E-13		0.0310972	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1817	chr1	161581234	161581235	rs535469909	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs535469909-C	0.452	1E-84	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	0.53	[0.47-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
1817	chr1	161588493	161588494	rs141772609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	FCGR3A, FCGR2B, RPS23P9	rs141772609-T	0.014772	7E-12		0.06636359	[0.047-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161589981	161589982	rs61802333	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD62L+ myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q23.3		rs61802333-T	0.46127	1E-28		0.3125	[0.26-0.37] unit increase	Illumina [17919786] (imputed)	N
1817	chr1	161590276	161590277	rs61802334	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGHG1;IGHG2;IGHG3;IGHG4;IGL;IGK	5,356 Icelandic ancestry individuals	NA	1q23.3		rs61802334-G	0.4991	2E-13		0.133234	[0.098-0.169] unit increase	Illumina [7506463] (imputed)	N
1817	chr1	161591087	161591088	rs139862824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.3	FCGR3A, FCGR2B	rs139862824-C	0.014757	9E-15		0.074475445	[0.056-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161599778	161599779	rs200688856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.3	FCGR3B	rs200688856-C	0.339876	2E-21		0.06389827	[0.051-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161599778	161599779	rs200688856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.3	FCGR3B	rs200688856-C	0.339914	1E-35		0.07219564	[0.061-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161599778	161599779	rs200688856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	FCGR3B	rs200688856-C	0.339898	3E-18		0.058127988	[0.045-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161599778	161599779	rs200688856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs200688856-C	0.312179	4E-17				Affymetrix, Illumina [19905671] (imputed)	N
1817	chr1	161599778	161599779	rs200688856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q23.3	NR	rs200688856-C	0.318411	2E-18		0.020103	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1817	chr1	161600520	161600521	rs513242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.3	FCGR3A, FCGR2B, FCGR3B	rs513242-T	0.368401	2E-21		0.056333594	[0.045-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161600591	161600592	rs72704050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q23.3	FCGR3B	rs72704050-A	0.494982	6E-11		0.01576739	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161600591	161600592	rs72704050	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	1q23.3	FCGR2B	rs72704050-G	0.4963	2E-42		0.15	NR SD units decrease	Illumina [21568490] (imputed)	N
1817	chr1	161606634	161606635	rs4102485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.3	FCGR2B	rs4102485-A	0.326106	2E-12		0.049518555	[0.036-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1817	chr1	161606971	161606972	rs2994672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	FCGR2B	rs2994672-T	0.358847	3E-12		0.04767503	[0.034-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q23.3		rs201950044-T	NR	5E-14		0.0278	[0.021-0.035] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1313	1E-11		0.03668028	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1312	1E-11		0.03669597	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1313	3E-12		0.03783445	[0.027-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1312	3E-12		0.03774076	[0.027-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1313	7E-12		0.03735665	[0.027-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1817	chr1	161609571	161609572	rs201950044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q23.3	FCGR2B	rs201950044-T	0.1313	2E-11		0.03666194	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1q23.3		rs7554873-T	0.947906	9E-9		0.0543612	[0.036-0.073] unit decrease	NR [11722792] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q23.3	FCGR2B	rs7554873-C	0.051999	5E-11		0.033454277	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q23.3	NR	rs7554873-C	0.052222	3E-18		0.037161	[0.029-0.046] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs7554873-C	0.0507683	5E-25				Affymetrix, Illumina [24653286] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs7554873-C	0.0507479	6E-22				Affymetrix, Illumina [24558453] (imputed)	N
1818	chr1	161612232	161612233	rs7554873	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	1q23.3	FCGR2B	rs7554873-C	0.0532	9E-32		0.28	NR SD units decrease	Illumina [21568490] (imputed)	N
1818	chr1	161612577	161612578	rs2926468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q23.3		rs2926468-C	NR	2E-263		0.0903	[0.085-0.095] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1818	chr1	161613098	161613099	rs140743372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1q23.3		rs140743372-C	0.042414	8E-10		0.0579545	[0.039-0.076] unit increase	Illumina [13479091] (imputed)	N
1818	chr1	161614489	161614490	rs1771582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	1q23.3		rs1771582-G	0.828537	2E-22		0.0566982	[0.045-0.068] unit decrease	Illumina [13477433] (imputed)	N
1818	chr1	161614489	161614490	rs1771582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q23.3	NR	rs1771582-G	NR	2E-10		0.0166	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161614489	161614490	rs1771582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q23.3	FCGR2B	rs1771582-T	0.442603	7E-11		0.0128979	[0.009-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1818	chr1	161614489	161614490	rs1771582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q23.3	FCGR2B	rs1771582-T	0.442671	3E-13		0.0148583	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1818	chr1	161617819	161617820	rs55970405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q23.3	NR	rs55970405-C	0.269498	6E-10		0.015036	[0.01-0.02] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1818	chr1	161620088	161620089	rs61804160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q23.3		rs61804160-?	NR	8E-22				NR [~ 8900000] (imputed)	N
1818	chr1	161620264	161620265	rs3002598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.3	FCGR2B	rs3002598-T	0.157925	3E-22		0.030095419	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1818	chr1	161620264	161620265	rs3002598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q23.3	FCGR2B	rs3002598-T	0.157904	2E-19		0.027729072	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1818	chr1	161620264	161620265	rs3002598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q23.3	NR	rs3002598-T	0.157372	1E-29		0.030748	[0.025-0.036] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1818	chr1	161620264	161620265	rs3002598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q23.3	NR	rs3002598-T	0.157388	1E-21		0.026523	[0.021-0.032] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1818	chr1	161622303	161622304	rs77132325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q23.3	FCGR2B	rs77132325-A	0.100893	8E-9		0.023261975	[0.015-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1818	chr1	161623024	161623025	rs61804164	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q23.3	FCGR3B	rs61804164-C		8E-24		0.032	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1818	chr1	161623024	161623025	rs61804164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q23.3	FCGR2B	rs61804164-C	0.1269	4E-11		0.0362632	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1818	chr1	161625797	161625798	rs75773410	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q23.3	NR	rs75773410-A	0.923	4E-15		0.774	[0.71-0.84]	Illumina [11270530] (imputed)	N
1818	chr1	161639558	161639559	rs1984769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	1q23.3		rs1984769-G	0.838399	2E-8		0.0340218	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
1818	chr1	161641363	161641366	rs755222686	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	1q23.3	FCGR2B	rs755222686-C	0.0009	4E-8	(Icelandic)	1.03	NR SD units increase	Illumina [21568490] (imputed)	N
1818	chr1	161641383	161641384	rs6665610	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	FCGR2B	rs6665610-A	0.205	2E-769	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	1.33	[1.29-1.37] unit increase	Affymetrix [10572788] (imputed)	N
1818	chr1	161641383	161641384	rs6665610	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	NR	rs6665610-?	NR	4E-160	(EA, Low affinity immunoglobulin gamma Fc region receptor II-a/b)			Affymetrix [509946]	N
1818	chr1	161642984	161642985	rs182968886	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q23.3	FCGR2B	rs182968886-A	0.116	7E-11		0.03781338	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1818	chr1	161643326	161643327	rs1674777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q23.3	FCGR2B	rs1674777-G	0.196377	4E-9		0.017023668	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1818	chr1	161644257	161644258	rs75409195	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q23.3	FCGR2B	rs75409195-G	0.7	3E-6	(East Asian)	0.13909	[0.08-0.198] unit decrease	Illumina [8380626] (imputed)	N
1818	chr1	161644386	161644387	rs1674757	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q23.3	FCGR2B	rs1674757-T	0.68	1E-27		10.9	z-score increase	Affymetrix [4314223] (imputed)	N
1818	chr1	161644810	161644811	rs17413015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q23.3	FCGR2B	rs17413015-T	0.188262	7E-12		0.019883934	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1818	chr1	161644810	161644811	rs17413015	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	1q23.3	NR	rs17413015-T	0.18	3E-9		0.029525777	[0.02-0.039] unit increase	NR [1977400] (imputed)	N
1818	chr1	161644810	161644811	rs17413015	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	1q23.3	NR	rs17413015-T	0.18	2E-8		0.024	[0.016-0.032] z score increase	Affymetrix [up to 10400000] (imputed)	N
1818	chr1	161644810	161644811	rs17413015	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	FCGR2B, RP11-25K21.1	rs17413015-T	0.1474164	9E-137	(Low affinity immunoglobulin gamma Fc region receptor II-a/b)	1.361	[1.27-1.45] unit increase	Affymetrix [509946]	N
1818	chr1	161644870	161644871	rs72480273	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q23.3	FCGR2B, FCGR2C, HSPA6	rs72480273-C	0.182033	4E-11		0.022546	[0.016-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1818	chr1	161644870	161644871	rs72480273	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	1q23.3	FCGR2B	rs72480273-C	0.17	2E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1818	chr1	161645009	161645010	rs6427615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q23.3	NR	rs6427615-?	NR	9E-9	(conditional on round 5)	0.030581918	[0.02-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161647359	161647360	rs72554670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs72554670-C	NR	9E-19		0.0945	[0.074-0.115] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161647359	161647360	rs72554670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs72554670-C	NR	1E-23		0.1071	[0.086-0.128] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161648541	161648542	rs114602456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114602456-T	NR	1E-16		0.074	[0.057-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161649751	161649751	rs35430653	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs35430653-CA	0.475	1E-162	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	0.7	[0.64-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
1818	chr1	161650459	161650460	rs114976095	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114976095-T	NR	2E-22		0.0864	[0.069-0.104] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161650459	161650460	rs114976095	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114976095-T	NR	2E-26		0.094	[0.077-0.111] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161650459	161650460	rs114976095	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs114976095-T	0.0122	7E-10	(NME8)	0.06622	NR unit increase	Illumina [1671387] (imputed)	N
1818	chr1	161652306	161652307	rs111528110	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCGR2B	5,368 Icelandic ancestry individuals	NA	1q23.3		rs111528110-T	0.03766	8E-70		0.857589	[0.76-0.95] unit increase	Illumina [7506463] (imputed)	N
1818	chr1	161653327	161653328	rs115282533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115282533-C	NR	1E-9		0.0501	[0.034-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161653327	161653328	rs115282533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115282533-C	NR	4E-16		0.0673	[0.051-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161653553	161653554	rs114384494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114384494-T	NR	3E-177		0.1891	[0.18-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161653553	161653554	rs114384494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q23.3	NR	rs114384494-T	NR	4E-11		0.0421	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161653553	161653554	rs114384494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114384494-T	NR	1E-266		0.2323	[0.22-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161653553	161653554	rs114384494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q23.3	NR	rs114384494-T	NR	8E-10		0.0392	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161653553	161653554	rs114384494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs114384494-T	NR	2E-23		0.0638	[0.051-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161653736	161653737	rs61804205	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q23.3	FCGR2B	rs61804205-?	NR	5E-65		0.0068	[0.0058-0.0078] unit increase	Affymetrix [21347608] (imputed)	N
1818	chr1	161653736	161653737	rs61804205	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q23.3	FCGR2B	rs61804205-?	NR	5E-25		0.0067	[0.0053-0.0081] unit increase	Affymetrix [21347608] (imputed)	N
1818	chr1	161654842	161654843	rs1256288	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q23.3	NR	rs1256288-G	0.696	2E-351	(Low affinity immunoglobulin gamma Fc region receptor II-b, FCGR2B.3310.62.1)	0.88	[0.84-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
1818	chr1	161655896	161655897	rs116282955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q23.3	RPL31P11	rs116282955-T	0.00800999999999996	8E-12		0.0887155	[0.063-0.114] unit increase	Affymetrix [93095623] (imputed)	N
1818	chr1	161659087	161659088	rs72633697	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q23.3	FCGR2B	rs72633697-T	0.683125	3E-376	(FCGR2B, 3310_62_1)	0.96195835	[0.92-1] unit decrease	Illumina [> 1000000] (imputed)	N
1818	chr1	161659800	161659801	rs114931935	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis in chronic obstructive pulmonary disease	1,662 European ancestry cases, 3,777 European ancestry controls	NA	1q23.3	ATF6, RPL31P11	rs114931935-A	0.04	5E-7		1.88	[1.47-2.40]	Illumina [NR] (imputed)	N
1818	chr1	161660695	161660696	rs6697139	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	1q23.3	FCGR2B, FCRLA, FCGR3B, RPL31P11	rs6697139-?	NR	3E-8				Illumina [491617]	N
1818	chr1	161666632	161666633	rs61804209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q23.3		rs61804209-G	NR	2E-32		0.0431	[0.036-0.05] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1818	chr1	161671305	161671306	rs61804211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q23.3		rs61804211-T	NR	3E-14		0.0288	[0.021-0.036] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1818	chr1	161671305	161671306	rs61804211	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q23.3	FCRLA	rs61804211-G	0.894454	4E-38		0.0107416	[0.0091-0.0124] unit decrease	Affymetrix [13995440] (imputed)	N
1818	chr1	161671773	161671774	rs58228855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs58228855-T	NR	6E-10		0.0312	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161671773	161671774	rs58228855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs58228855-T	NR	1E-13		0.0374	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161671773	161671774	rs58228855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs58228855-T	NR	1E-9		0.0293	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161671994	161671995	rs6668534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs6668534-A	NR	7E-39		0.0392	[0.033-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161671994	161671995	rs6668534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs6668534-A	NR	6E-47		0.0432	[0.037-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161671994	161671995	rs6668534	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q23.3	FCGR2B, FCRLA, RP11-25K21.1, RPL31P11, Y_RNA	rs6668534-G	0.2313883	6E-17	(EA, Low affinity immunoglobulin gamma Fc region receptor II-a/b)	0.434	[0.33-0.53] unit decrease	Affymetrix [509946]	N
1818	chr1	161672051	161672052	rs10917717	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1q23.3	NR	rs10917717-?	NR	2E-9		0.06301	[0.042-0.084] unit decrease novel	Illumina [6108953] (imputed)	N
1818	chr1	161672450	161672451	rs6671332	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q23.3	NR	rs6671332-?	NR	2E-15		0.08521	[0.064-0.106] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161673858	161673859	rs61801160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61801160-G	NR	2E-42		0.1089	[0.093-0.125] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161673858	161673859	rs61801160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs61801160-G	NR	6E-50		0.1186	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161673858	161673859	rs61801160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs61801160-G	NR	3E-15		0.0604	[0.046-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161674586	161674587	rs66930627	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q23.3	NR	rs66930627-?	NR	1E-14		0.06428	[0.048-0.081] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161674586	161674587	rs66930627	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1q23.3	NR	rs66930627-?	NR	4E-12		0.05765	[0.041-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1818	chr1	161678421	161678422	rs12136414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.3		rs12136414-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1818	chr1	161681779	161681780	rs2275603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs2275603-G	NR	5E-34		0.0371	[0.031-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161681779	161681780	rs2275603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs2275603-G	NR	4E-53		0.0468	[0.041-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161683135	161683136	rs11746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.3	FCRLA	rs11746-A	0.48709	8E-14		0.017058533	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1818	chr1	161685590	161685591	rs10917750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q23.3	FCRLA	rs10917750-T	0.710658	2E-10		0.01557587	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1818	chr1	161685799	161685800	rs12038019	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q23.3	NR	rs12038019-?	NR	4E-8	(conditional on round 4)	0.023026608	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161696997	161696998	rs1875763	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	1q23.3	FCRLB	rs1875763-?	NR	2E-8		0.02667	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161696997	161696998	rs1875763	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q23.3	NR	rs1875763-?	NR	3E-9		0.03	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161697148	161697149	rs16858529	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs16858529-T	NR	1E-19		0.0682	[0.053-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161697148	161697149	rs16858529	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs16858529-T	NR	3E-39		0.0986	[0.084-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161697318	161697319	rs34868416	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs34868416-A	NR	6E-14		0.0331	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161697318	161697319	rs34868416	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs34868416-A	NR	5E-20		0.0404	[0.032-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161705319	161705320	rs16859940	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.3	NR	rs16859940-?	NR	3E-7				Affymetrix [NR]	N
1818	chr1	161708193	161708194	rs10799941	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q23.3	FCRLB, DUSP12	rs10799941-G	0.043	3E-11		6.65	z-score increase	Affymetrix [4311822] (imputed)	N
1818	chr1	161709132	161709133	rs9787369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs9787369-T	NR	6E-54		0.1126	[0.098-0.127] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161709132	161709133	rs9787369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q23.3	NR	rs9787369-T	NR	5E-12		0.0482	[0.034-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161709132	161709133	rs9787369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs9787369-T	NR	1E-85		0.1428	[0.13-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1818	chr1	161709132	161709133	rs9787369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q23.3	NR	rs9787369-T	NR	7E-16		0.0563	[0.043-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161711251	161711252	rs1340981	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	1q23.3	NR	rs1340981-?	NR	1E-16		0.03571	[0.027-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161714572	161714573	rs4657097	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	1q23.3	FCRLB, DUSP12	rs4657097-?	NR	4E-21		0.04374	[0.035-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
1818	chr1	161714581	161714582	rs4657098	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	1q23.3	FCRLB, DUSP12	rs4657098-?	NR	6E-15		0.03687	[0.028-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1818	chr1	161719378	161719379	rs953301	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	1q23.3	NR	rs953301-A	0.0381	8E-6		0.0464	[0.026-0.067] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1818	chr1	161721350	161721351	rs7540096	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Immunoglobulin measurement (zinc sulfate turbidity test)	12,303 Japanese ancestry individuals	NA	1q23.3	DUSP12	rs7540096-?	NR	3E-13		0.09648	[0.071-0.122] unit decrease	Illumina [6108953] (imputed)	N
1818	chr1	161741910	161741911	rs76652463	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs76652463-A	NR	1E-15		0.0692	[0.052-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1818	chr1	161741910	161741911	rs76652463	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs76652463-A	NR	4E-22		0.0837	[0.067-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr1	161747040	161747041	rs116791819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs116791819-A	NR	1E-17		0.0998	[0.077-0.123] unit decrease	Affymetrix [9000000] (imputed)	N
1819	chr1	161747040	161747041	rs116791819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs116791819-A	NR	4E-31		0.1356	[0.11-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
1819	chr1	161786494	161786495	rs16849542	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.3	NR	rs16849542-?	NR	1E-10				Affymetrix [NR]	N
1819	chr1	161826614	161826615	rs3767633	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q23.3	NR	rs3767633-T	0.145416417670683	8E-6	(IGP39)	0.2053	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1819	chr1	161855941	161855942	rs115076617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115076617-A	NR	1E-11		0.0624	[0.044-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1819	chr1	161855941	161855942	rs115076617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs115076617-A	NR	9E-13		0.0661	[0.048-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1820	chr1	161885544	161885545	rs6695760	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs6695760-C	0.863	2E-16		0.1833	[0.14-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1820	chr1	161894279	161894280	rs114015046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs114015046-T	NR	7E-12		0.0606	[0.043-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1820	chr1	161899635	161899636	rs17450717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs17450717-G	NR	3E-9		0.054	[0.036-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1820	chr1	161915500	161915501	rs10918270	19772629	Latourelle JC	2009-09-22	BMC Med Genet	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	1q23.3	ATF6	rs10918270-A	NR	8E-6		2.26	[NR] years decrease	Illumina, Perlegen [1861750] (imputed)	N
1820	chr1	161937891	161937892	rs3002626	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	1q23.3	ATF6, OLFML2B	rs3002626-?	NR	7E-6		1.4285715	[1.22-1.67]	Illumina [5698748] (imputed)	N
1820	chr1	161941470	161941471	rs28628087	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs28628087-T	0.796	2E-6		0.0639	[0.037-0.09] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1820	chr1	161941470	161941471	rs28628087	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs28628087-T	0.7997	3E-17		0.0996	[0.076-0.123] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1820	chr1	161945418	161945419	rs1962508	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs1962508-?	NR	6E-36		0.03319406	[0.028-0.038] unit decrease	Illumina [30613845] (imputed)	N
1820	chr1	161946726	161946727	rs2340727	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs2340727-?	NR	2E-61		0.05194951	[0.046-0.058] unit decrease	Illumina [30613845] (imputed)	N
1820	chr1	161946726	161946727	rs2340727	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	1q23.3	NR	rs2340727-A	0.81	3E-6		0.161	[0.094-0.228] unit increase	Illumina [27887661] (imputed)	N
1820	chr1	161946726	161946727	rs2340727	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	1q23.3	DARC	rs2340727-A	NR	2E-23	(WBC)	0.0229	[0.018-0.027] unit increase	Illumina [544917]	N
1820	chr1	161948126	161948127	rs7529274	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs7529274-A	0.1945	1E-11		0.0959	[0.068-0.124] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1820	chr1	161950398	161950399	rs10918341	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs10918341-A	0.1532	5E-83		0.4257	[0.38-0.47] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1820	chr1	161951076	161951077	rs17452514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs17452514-T	NR	1E-21		0.0884	[0.07-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1820	chr1	161951076	161951077	rs17452514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs17452514-T	NR	2E-30		0.1061	[0.088-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
1820	chr1	161953399	161953400	rs12039519	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q23.3	NR	rs12039519-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1820	chr1	161955655	161955656	rs2490423	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	1q23.3	NR	rs2490423-G		6E-6				NR [525577]	N
1820	chr1	161959399	161959400	rs2250998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q23.3	NR	rs2250998-C	NR	5E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1820	chr1	161971588	161971588	rs146268058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q23.3	OLFML2B	rs146268058-GGCT	0.014081	9E-10		0.059963137	[0.041-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1820	chr1	161981024	161981025	rs6669543	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q23.3	OLFML2B	rs6669543-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1820	chr1	161981024	161981025	rs6669543	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs6669543-T	0.258	2E-39		1.46	[1.24-1.68] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1820	chr1	161983088	161983089	rs6676438	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	1q23.3	OLFML2B	rs6676438-A	0.837	4E-12	(AA)	0.1461	[0.1-0.19] unit increase	Illumina [~ 200000]	N
1820	chr1	161991236	161991237	rs4656345	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs4656345-A	0.085	1E-19		4.73	[3.71-5.75] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1820	chr1	161994009	161994010	rs4657136	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4657136-T	0.8441	2E-131		0.3619	[0.33-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1821	chr1	162011053	162011054	rs1415267	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q23.3	NR	rs1415267-?	NR	7E-6		1713.2444	NR unit increase	Illumina [2379855]	N
1821	chr1	162014631	162014632	rs2880058	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs2880058-?	NR	8E-9		1.225121	[0.81-1.64] unit increase	Illumina [26659972] (imputed)	N
1821	chr1	162014631	162014632	rs2880058	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	1q23.3	NOS1AP	rs2880058-G	0.32	2E-10		0.19	[0.13-0.25] unit increase	Illumina [~ 318327]	N
1821	chr1	162015739	162015740	rs12036340	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	1q23.3	OLFML2B	rs12036340-?	NR	1E-9	(EA)	145.11	[98.05-192.17] unit decrease	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1821	chr1	162020999	162021000	rs2010491	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	1q23.3	NOS1AP	rs2010491-G	0.233	2E-89		4.332	[3.91-4.76] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	1q23.3		rs12143842-C	0.75	3E-114		0.153	[0.14-0.17] unit decrease	Affymetrix [NR]	N
1821	chr1	162033889	162033890	rs12143842	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	1q23.3		rs12143842-C	0.75	2E-69		0.118	[0.1-0.13] unit decrease	Affymetrix [NR]	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	9E-77	(320 ms)	0.117252	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	9E-75	(322 ms)	0.115491	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	9E-69	(298 ms)	0.111214	[0.099-0.124] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	9E-25	(364 ms)	0.0665617	[0.054-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	8E-9	(384 ms)	0.0374008	[0.025-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	8E-33	(280 ms)	0.0770396	[0.064-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	8E-24	(366 ms)	0.0651791	[0.052-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	7E-58	(340 ms)	0.101634	[0.089-0.114] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	7E-52	(204 ms)	0.0938861	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	7E-43	(188 ms)	0.0853692	[0.073-0.098] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	7E-13	(376 ms)	0.0465671	[0.034-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	6E-75	(304 ms)	0.115968	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	6E-61	(338 ms)	0.104682	[0.092-0.117] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	6E-24	(362 ms)	0.0652993	[0.053-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	6E-14	(372 ms)	0.0485959	[0.036-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	6E-12	(378 ms)	0.0445376	[0.032-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	5E-80	(308 ms)	0.119989	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	5E-74	(324 ms)	0.11497	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	5E-48	(218 ms)	0.0906932	[0.078-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	5E-35	(354 ms)	0.0798803	[0.067-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	5E-14	(374 ms)	0.0488525	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-80	(316 ms)	0.119965	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-70	(328 ms)	0.111885	[0.099-0.125] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-64	(330 ms)	0.107153	[0.095-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-58	(292 ms)	0.102471	[0.09-0.115] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-53	(206 ms)	0.0948152	[0.082-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-51	(196 ms)	0.092975	[0.081-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-50	(200 ms)	0.0923735	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-47	(286 ms)	0.0931067	[0.08-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-45	(190 ms)	0.0872255	[0.075-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	4E-28	(278 ms)	0.0710621	[0.058-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-9	(382 ms)	0.0384701	[0.026-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-78	(306 ms)	0.118489	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-75	(314 ms)	0.116043	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-74	(312 ms)	0.115252	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-72	(302 ms)	0.113936	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-61	(332 ms)	0.104506	[0.092-0.117] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-52	(288 ms)	0.0973015	[0.085-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-50	(194 ms)	0.0922034	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-42	(284 ms)	0.087829	[0.075-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-39	(348 ms)	0.0846314	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-37	(282 ms)	0.0823523	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	3E-33	(174 ms)	0.0742745	[0.062-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-80	(318 ms)	0.120291	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-77	(310 ms)	0.118458	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-73	(326 ms)	0.114395	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-61	(294 ms)	0.105019	[0.092-0.118] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-55	(290 ms)	0.100235	[0.088-0.113] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-53	(342 ms)	0.097614	[0.085-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-52	(208 ms)	0.09388	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-51	(212 ms)	0.0934601	[0.081-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-51	(210 ms)	0.0926099	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-50	(216 ms)	0.0927831	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-48	(344 ms)	0.0931999	[0.081-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-47	(192 ms)	0.0899259	[0.077-0.102] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-43	(346 ms)	0.0893777	[0.077-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-40	(184 ms)	0.0825124	[0.07-0.095] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-38	(352 ms)	0.0838903	[0.071-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-38	(350 ms)	0.0838777	[0.071-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-38	(180 ms)	0.0799363	[0.068-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-36	(178 ms)	0.0775529	[0.065-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-27	(358 ms)	0.0701847	[0.058-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-19	(368 ms)	0.0585105	[0.046-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-15	(370 ms)	0.0513374	[0.039-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	2E-10	(380 ms)	0.0412201	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-70	(300 ms)	0.112533	[0.1-0.125] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-65	(296 ms)	0.10841	[0.096-0.121] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-62	(336 ms)	0.106266	[0.094-0.119] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-62	(334 ms)	0.10582	[0.093-0.118] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-51	(214 ms)	0.0941399	[0.082-0.107] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-50	(202 ms)	0.0926477	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-50	(198 ms)	0.092778	[0.08-0.105] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-39	(182 ms)	0.0813896	[0.069-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-34	(176 ms)	0.075841	[0.063-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-30	(356 ms)	0.0743136	[0.062-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-24	(360 ms)	0.0663302	[0.054-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.747386	1E-23	(276 ms)	0.0647948	[0.052-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	32429735	Lahrouchi N	2020-05-20	Circulation	Transethnic Genome-Wide Association Study Provides Insights in the Genetic Architecture and Heritability of Long QT Syndrome.	Long QT syndrome	1,238 European ancestry cases, 8,219 European ancestry controls, 418 Japanese cases, 1,617 Japanese controls	NA	1q23.3	NOS1AP	rs12143842-T		1E-11		1.32	[1.21-1.42]	Illumina [NR] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.75	5E-17		0.059	[0.045-0.073] unit decrease	NR [~ 9000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.75	5E-16		0.045	[0.033-0.057] unit decrease	NR [~ 9000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.75	2E-13		0.048	[0.036-0.06] unit decrease	NR [~ 9000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.75	7E-7		0.032	[0.02-0.044] unit decrease	NR [~ 9000000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs12143842-?	NR	3E-37		3.222552	[2.73-3.72] unit increase	Illumina [26659972] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q23.3	NOS1AP	rs12143842-T	0.22	3E-42		3.46	[2.97-3.95] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	1q23.3	NOS1AP	rs12143842-T	0.39	4E-18	(QT)	3.888	[NR] unit increase	Illumina [~ 2500000]	N
1821	chr1	162033889	162033890	rs12143842	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs12143842-T	0.24	1E-213		3.5	[3.28-3.72] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	1q23.3	NOS1AP	rs12143842-C	0.80	2E-15		3.14	[2.38-3.90] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	19587794	Nolte IM	2009-07-09	PLoS One	Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies.	QT interval	3,558 European ancestry individuals	29,527 European ancestry individuals	1q23.3	NOS1AP, OLFML2B	rs12143842-T	0.25	1E-83		0.18	[NR] unit increase	Affymetrix, Illumina [~ 2399142] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q23.3	NOS1AP	rs12143842-T	0.24	2E-78		2.88	[2.43-3.33] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
1821	chr1	162033889	162033890	rs12143842	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	NOS1AP	rs12143842-T	0.26	2E-78		3.15	[2.81-3.49] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
1821	chr1	162042312	162042313	rs1123015	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q23.3	NOS1AP	rs1123015-A	0.34374	4E-17		0.0162849	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
1821	chr1	162042312	162042313	rs1123015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q23.3		rs1123015-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1821	chr1	162053507	162053508	rs10918630	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q23.3		rs10918630-?	NR	4E-15		0.0169284	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1821	chr1	162085308	162085309	rs1415259	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs1415259-?	NR	3E-7		1.070676	[0.66-1.48] unit decrease	Illumina [26659972] (imputed)	N
1821	chr1	162085308	162085309	rs1415259	20062061	Chambers JC	2010-01-10	Nat Genet	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	1q23.3	NOS1AP	rs1415259-A	0.39	7E-10	(QTc interval)	2.53	[1.73-3.33] ms decrease	Illumina [303309]	N
1821	chr1	162085684	162085685	rs10494366	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs10494366-?	NR	3E-7		1.06617	[0.66-1.47] unit decrease	Illumina [26659972] (imputed)	N
1821	chr1	162085684	162085685	rs10494366	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	1q23.3	NOS1AP	rs10494366-G	0.39	5E-22	(QT interval)	12.2	[9.72-14.68] % s.d. increase	Illumina [306060]	N
1821	chr1	162085684	162085685	rs10494366	16648850	Arking DE	2006-04-30	Nat Genet	A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization.	QT interval	100 European ancestry > 445ms female individuals, 100 European ancestry < 386ms female individuals	200 European ancestry > 85th pct female individuals, 200 European ancestry < 15th pct female individuals, 4,451 European ancestry individuals	1q23.3	NOS1AP	rs10494366-?		1E-10				Affymetrix [88500]	N
1821	chr1	162089317	162089318	rs76662883	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q23.3	NOS1AP	rs76662883-A	0.0060	9E-6	(Hip circumference )	0.03	[NR] cm increase	Illumina [899892]	N
1821	chr1	162090535	162090536	rs10918701	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	1q23.3		rs10918701-G	0.372	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1821	chr1	162104302	162104303	rs4620512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.3	NOS1AP	rs4620512-T	0.096828	3E-11		0.024954706	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1821	chr1	162108014	162108015	rs4657153	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1q23.3		rs4657153-C	0.69599	3E-6		0.034474	[0.02-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
1821	chr1	162109786	162109787	rs12116968	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q23.3	NOS1AP	rs12116968-?		2E-6				Illumina [4322238] (imputed)	N
1821	chr1	162112909	162112910	rs16857031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs16857031-?	NR	7E-10		1.712269	[1.17-2.26] unit increase	Illumina [26659972] (imputed)	N
1821	chr1	162112909	162112910	rs16857031	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs16857031-G	0.132	7E-61		2.37	[2.1-2.64] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1821	chr1	162112909	162112910	rs16857031	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	NOS1AP	rs16857031-G	0.14	1E-34		2.63	[2.28-2.97] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	9E-9	(340 ms)	0.0522572	[0.034-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	9E-9	(300 ms)	0.0523314	[0.034-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	9E-10	(336 ms)	0.0556476	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	9E-10	(328 ms)	0.0556084	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	8E-14	(178 ms)	0.0646309	[0.047-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	8E-11	(308 ms)	0.0589355	[0.041-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	8E-10	(324 ms)	0.0548814	[0.037-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	7E-20	(208 ms)	0.0808318	[0.063-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	7E-19	(202 ms)	0.0781882	[0.06-0.096] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	7E-11	(318 ms)	0.0592656	[0.041-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	6E-21	(198 ms)	0.0819928	[0.064-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	6E-11	(312 ms)	0.0596912	[0.042-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	5E-9	(334 ms)	0.0533103	[0.035-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	5E-19	(194 ms)	0.0788169	[0.061-0.097] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	5E-18	(192 ms)	0.0764795	[0.059-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	5E-10	(322 ms)	0.0556038	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	5E-10	(302 ms)	0.0562463	[0.038-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	4E-20	(218 ms)	0.0811247	[0.063-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	4E-20	(216 ms)	0.0811585	[0.063-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	4E-20	(214 ms)	0.08097	[0.063-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-9	(326 ms)	0.0538893	[0.036-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-8	(294 ms)	0.0508515	[0.033-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-20	(212 ms)	0.0816865	[0.064-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-19	(204 ms)	0.0791746	[0.061-0.097] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-16	(188 ms)	0.0713167	[0.053-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-15	(182 ms)	0.0686527	[0.051-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	3E-11	(304 ms)	0.0598654	[0.042-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-20	(196 ms)	0.0818694	[0.064-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-15	(184 ms)	0.0687767	[0.051-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-11	(316 ms)	0.0611682	[0.043-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-11	(314 ms)	0.0607853	[0.043-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-11	(306 ms)	0.0605562	[0.042-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	2E-10	(320 ms)	0.0577264	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-9	(338 ms)	0.0547227	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-9	(330 ms)	0.0550624	[0.037-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-8	(332 ms)	0.0520037	[0.034-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-8	(298 ms)	0.0523602	[0.034-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-8	(296 ms)	0.052029	[0.034-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-20	(210 ms)	0.0824706	[0.065-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-19	(206 ms)	0.0802089	[0.062-0.098] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-19	(200 ms)	0.078885	[0.061-0.097] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-16	(190 ms)	0.0731609	[0.055-0.091] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-14	(180 ms)	0.0669162	[0.049-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-12	(176 ms)	0.0619267	[0.044-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-10	(310 ms)	0.0585159	[0.04-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1821	chr1	162112965	162112966	rs59852339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs59852339-T	0.899466	1E-10	(174 ms)	0.0568365	[0.039-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1821	chr1	162133116	162133117	rs12029454	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs12029454-?	NR	3E-20		2.247064	[1.77-2.73] unit increase	Illumina [26659972] (imputed)	N
1821	chr1	162133116	162133117	rs12029454	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	1q23.3	NOS1AP	rs12029454-A	0.15	3E-45		2.98	[2.63-3.32] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	9E-20	(210 ms)	0.185748	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	9E-18	(230 ms)	0.179753	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	9E-13	(312 ms)	0.147907	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	9E-12	(314 ms)	0.139773	[0.098-0.181] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	8E-16	(192 ms)	0.166108	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	8E-11	(330 ms)	0.134505	[0.093-0.176] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	8E-10	(346 ms)	0.1309	[0.089-0.173] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	7E-9	(334 ms)	0.120526	[0.079-0.162] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	7E-9	(302 ms)	0.117452	[0.076-0.159] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	7E-12	(180 ms)	0.141607	[0.1-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	7E-11	(318 ms)	0.134304	[0.093-0.176] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	7E-11	(246 ms)	0.138408	[0.097-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-20	(224 ms)	0.189538	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-20	(214 ms)	0.188408	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-19	(204 ms)	0.182967	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-11	(326 ms)	0.134133	[0.093-0.176] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-11	(306 ms)	0.134073	[0.093-0.176] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	6E-10	(332 ms)	0.128488	[0.087-0.17] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-9	(172 ms)	0.121846	[0.081-0.163] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-21	(218 ms)	0.192495	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-19	(228 ms)	0.18579	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-15	(190 ms)	0.160801	[0.12-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-12	(184 ms)	0.142815	[0.1-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	5E-10	(322 ms)	0.127741	[0.086-0.169] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	4E-20	(212 ms)	0.187191	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	4E-17	(234 ms)	0.178019	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	4E-15	(238 ms)	0.165673	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	4E-13	(242 ms)	0.153113	[0.11-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	4E-12	(186 ms)	0.143612	[0.1-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-9	(348 ms)	0.125823	[0.084-0.168] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-9	(340 ms)	0.124752	[0.083-0.166] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-9	(320 ms)	0.123631	[0.082-0.165] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-8	(250 ms)	0.118309	[0.077-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-20	(216 ms)	0.190439	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-11	(324 ms)	0.135993	[0.094-0.178] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-11	(316 ms)	0.137427	[0.096-0.179] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	3E-10	(328 ms)	0.129824	[0.088-0.171] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-9	(174 ms)	0.123809	[0.083-0.165] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-21	(220 ms)	0.195331	[0.15-0.24] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-19	(226 ms)	0.188238	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-19	(208 ms)	0.184718	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-19	(206 ms)	0.184761	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-18	(202 ms)	0.178931	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-17	(200 ms)	0.173531	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-16	(236 ms)	0.172533	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-16	(198 ms)	0.168264	[0.13-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-14	(240 ms)	0.161025	[0.12-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	2E-12	(182 ms)	0.146315	[0.11-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-9	(342 ms)	0.126472	[0.085-0.168] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-9	(336 ms)	0.127554	[0.086-0.169] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-9	(248 ms)	0.12995	[0.088-0.171] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-9	(176 ms)	0.125482	[0.085-0.166] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-8	(170 ms)	0.11668	[0.076-0.157] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-20	(222 ms)	0.193491	[0.15-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-17	(232 ms)	0.178375	[0.14-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-15	(196 ms)	0.165244	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-15	(194 ms)	0.165057	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-13	(188 ms)	0.152266	[0.11-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-12	(310 ms)	0.147289	[0.11-0.19] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-11	(308 ms)	0.138809	[0.097-0.18] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-11	(244 ms)	0.145621	[0.1-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-10	(304 ms)	0.131038	[0.09-0.173] unit increase	Affymetrix [10000000] (imputed)	N
1822	chr1	162153551	162153552	rs116381680	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	NOS1AP	rs116381680-A	0.9816	1E-10	(178 ms)	0.13108	[0.09-0.172] unit decrease	Affymetrix [10000000] (imputed)	N
1822	chr1	162166645	162166646	rs12567315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q23.3	NOS1AP	rs12567315-A	0.208022	7E-11		0.017661957	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1822	chr1	162166645	162166646	rs12567315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.3	NOS1AP	rs12567315-A	0.208097	1E-12		0.019394735	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1822	chr1	162168153	162168154	rs17457880	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs17457880-A	0.055	3E-10		1.9	[1.31-2.49] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1822	chr1	162179631	162179632	rs4657172	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs4657172-?	NR	5E-8		1.454178	[0.93-1.98] unit increase	Illumina [26659972] (imputed)	N
1822	chr1	162179631	162179632	rs4657172	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs4657172-C	0.125	1E-8		0.81	[0.54-1.08] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1822	chr1	162182676	162182677	rs3934467	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q23.3	NOS1AP	rs3934467-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1822	chr1	162182676	162182677	rs3934467	32429735	Lahrouchi N	2020-05-20	Circulation	Transethnic Genome-Wide Association Study Provides Insights in the Genetic Architecture and Heritability of Long QT Syndrome.	Long QT syndrome	1,238 European ancestry cases, 8,219 European ancestry controls, 418 Japanese cases, 1,617 Japanese controls	NA	1q23.3	NOS1AP	rs3934467-T		3E-6		1.22	[1.12-1.33]	Illumina [NR] (imputed)	N
1822	chr1	162182676	162182677	rs3934467	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs3934467-?	NR	4E-21		2.143661	[1.7-2.59] unit increase	Illumina [26659972] (imputed)	N
1822	chr1	162182676	162182677	rs3934467	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q23.3	NOS1AP	rs3934467-T	0.28	2E-11		1.62	[1.15-2.09] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1822	chr1	162182676	162182677	rs3934467	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs3934467-T	0.222	3E-129		2.74	[2.52-2.96] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1822	chr1	162184745	162184746	rs73017364	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q23.3	NOS1AP	rs73017364-T	0.87	4E-8		1.73	[1.12-2.34] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1822	chr1	162191102	162191103	rs7545047	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs7545047-A	0.049	9E-14		1.78	[1.31-2.25] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1822	chr1	162195737	162195738	rs4657175	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs4657175-?	NR	9E-21		2.124334	[1.68-2.57] unit increase	Illumina [26659972] (imputed)	N
1822	chr1	162195737	162195738	rs4657175	22726844	Kim JW	2012-06-20	Am J Hum Genet	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	1q23.3	NOS1AP	rs4657175-?	NR	1E-9		1.709	[1.156-2.261] ms increase	Affymetrix [352228]	N
1822	chr1	162198428	162198429	rs12737539	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during recovery from exercise	51,503 European ancestry individuals	NA	1q23.3		rs12737539-G	0.364	5E-9		0.034	[0.022-0.046] bpm increase	Affymetrix [9800000] (imputed)	N
1822	chr1	162210609	162210610	rs4657178	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q23.3	NR	rs4657178-?	NR	8E-9		1.250517	[0.83-1.68] unit increase	Illumina [26659972] (imputed)	N
1822	chr1	162210609	162210610	rs4657178	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q23.3	NOS1AP	rs4657178-T	0.33	7E-33		2.19	[1.76-2.62] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
1822	chr1	162212764	162212765	rs6658646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q23.3	NOS1AP	rs6658646-T	0.16	7E-10		0.03000592	[0.02-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1822	chr1	162220117	162220118	rs6677530	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q23.3		rs6677530-A	0.842	3E-9				Affymetrix [10369434] (imputed)	N
1822	chr1	162220117	162220118	rs6677530	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q23.3	NOS1AP	rs6677530-G	0.1586	9E-12		0.03324371	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1822	chr1	162224585	162224586	rs12742393	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q23.3	NR	rs12742393-?	NR	5E-8				Illumina [7760689] (imputed)	N
1822	chr1	162225144	162225145	rs60441301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q23.3	NOS1AP	rs60441301-A	0.157274	1E-25		0.031758245	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1822	chr1	162225144	162225145	rs60441301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q23.3	NOS1AP	rs60441301-A	0.15728	7E-17		0.025302716	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1822	chr1	162225144	162225145	rs60441301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q23.3	NR	rs60441301-A	0.158398	3E-25		0.026576	[0.022-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1822	chr1	162230291	162230292	rs73019426	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q23.3	NOS1AP	rs73019426-G	NR	8E-6		3.76275	[2.11-5.42] unit increase	Illumina [13520550] (imputed)	N
1822	chr1	162247737	162247738	rs4657180	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	1q23.3	NOS1AP	rs4657180-T	0.111885	8E-6		0.26943	[0.15-0.39] unit increase	NR [7263501] (imputed)	N
1822	chr1	162261825	162261826	rs17460657	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs17460657-C	0.045	3E-16		4.6	[3.5-5.7] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1822	chr1	162264017	162264018	rs6690162	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		1q23.3	NOS1AP	rs6690162-G	0.0741988	2E-6		0.701208	[0.42-0.99] unit decrease	Illumina [640625] (imputed)	N
1823	chr1	162304275	162304276	rs347313	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	1q23.3	NOS1AP	rs347313-G	0.322	2E-8	(females)	0.249	[0.16-0.34] unit increase	Illumina [1208102] (imputed)	N
1823	chr1	162318497	162318498	rs347272	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q23.3	NOS1AP	rs347272-?	NR	4E-11				Affymetrix, Illumina [22000000] (imputed)	N
1823	chr1	162318497	162318498	rs347272	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs347272-A	0.132	1E-37		1.8	[1.53-2.07] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1823	chr1	162319523	162319524	rs11577628	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1q23.3	NOS1AP	rs11577628-A	0.92	5E-6		0.123	[0.07-0.176] unit decrease	Illumina [~ 2400000] (imputed)	N
1823	chr1	162320608	162320609	rs60709352	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	1q23.3	NOS1AP, MIR556, RNA5SP61, C1orf226, C1orf111, SH2D1B	rs60709352-C	0.118306	4E-7		0.295867	[0.18-0.41] % increase	Affymetrix [532676] (imputed)	N
1823	chr1	162320608	162320609	rs60709352	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	1q23.3	NOS1AP, MIR556, RNA5SP61, C1orf226, C1orf111, SH2D1B	rs60709352-C	0.118306	5E-6		0.24986	[0.14-0.36] mm2 increase	Affymetrix [532676] (imputed)	N
1823	chr1	162381287	162381288	rs164133	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q23.3	NOS1AP	rs164133-C	0.264	3E-11		0.72	[0.5-0.94] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1824	chr1	162426450	162426451	rs12131428	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	1q23.3	UHMK1	rs12131428-?		2E-7		0.3885	[NR] unit increase	Affymetrix [679050]	N
1824	chr1	162449408	162449409	rs12047961	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	1q23.3	SH2D1B, UHMK1	rs12047961-A	0.01	2E-7	(EA)	6.37	[2.89-14.03]	Illumina [up to 547389]	N
1824	chr1	162450930	162450931	rs142502288	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	1q23.3	SH2D1B/UHMK1	rs142502288-G	0.0206215	3E-8		1.52	[1.31-1.76]	Illumina [9332516] (imputed)	N
1824	chr1	162468585	162468586	rs57561731	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q23.3	Intergenic	rs57561731-?		9E-6		1.7	[1.34-2.14]	Illumina [7645193] (imputed)	N
1824	chr1	162505495	162505496	rs16863247	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (total hip)	2,729 Korean ancestry individuals	1,547 Chinese Han ancestry individuals, 3,237 European ancestry individuals	1q23.3	UHMK1	rs16863247-G	0.14	3E-6		0.14	unit decrease	Affymetrix [328918]	N
1824	chr1	162505495	162505496	rs16863247	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (femoral neck)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	1q23.3	UHMK1	rs16863247-G	0.14	4E-7		0.15	unit decrease	Affymetrix [328918]	N
1825	chr1	162586925	162586926	rs117521141	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	1q23.3		rs117521141-G	0.02726	9E-6		1.635	[1.31599999999999-2.033]	Affymetrix [7975321] (imputed)	N
1825	chr1	162587215	162587216	rs114447177	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	1q23.3	NR	rs114447177-A	0.011	2E-6		1.7	[1.01-2.39] unit increase	Illumina [9469131] (imputed)	N
1825	chr1	162603880	162603881	rs6702820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q23.3		rs6702820-G	0.200208	6E-9		0.0147331	[0.0098-0.0197] unit increase	Illumina [13479295] (imputed)	N
1825	chr1	162603880	162603881	rs6702820	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q23.3	DDR2	rs6702820-?	NR	6E-9		0.020863855	[0.014-0.028] unit increase	Illumina [27896057] (imputed)	N
1825	chr1	162609737	162609738	rs7512080	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	1q23.3		rs7512080-G	0.05	1E-6		1.84		Illumina [10258281] (imputed)	N
1825	chr1	162622398	162622399	rs17472834	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs17472834-C	0.01568	8E-12	(TNC)	0.06836	NR unit increase	Illumina [1671387] (imputed)	N
1825	chr1	162622398	162622399	rs17472834	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs17472834-C	0.01568	5E-10	(AOC3)	0.01956	NR unit increase	Illumina [1671387] (imputed)	N
1825	chr1	162630045	162630046	rs75068199	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q23.3	Intergenic	rs75068199-?		4E-7		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
1825	chr1	162630045	162630046	rs75068199	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q23.3	Intergenic	rs75068199-?		4E-7		1.82	[1.44-2.30]	Illumina [7645193] (imputed)	N
1825	chr1	162658482	162658483	rs10799867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q23.3		rs10799867-G	NR	5E-13		0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1825	chr1	162658772	162658773	rs6697469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q23.3		rs6697469-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1826	chr1	162668007	162668008	rs4411113	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	1q23.3	DDR2	rs4411113-T	NR	6E-7		0.917594	[0.88-0.95]	Illumina [NR] (imputed)	N
1826	chr1	162668007	162668008	rs4411113	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	1q23.3	DDR2	rs4411113-T	NR	7E-9		0.907556	[0.87-0.94]	Illumina [NR] (imputed)	N
1826	chr1	162672010	162672011	rs17433710	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	1q23.3	HSD17B7, DDR2	rs17433710-?	0.88	2E-10		1.2300123	[1.15-1.31]	Illumina [238825]	N
1826	chr1	162691458	162691459	rs2806424	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs2806424-?	NR	2E-19		0.02314168	[0.018-0.028] unit increase	Illumina [30613845] (imputed)	N
1826	chr1	162733235	162733236	rs2800278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q23.3		rs2800278-A	NR	3E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1826	chr1	162737079	162737080	rs143928882	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1q23.3	DDR2	rs143928882-C		2E-6	(AA)	7.692308	[1.32-50]	Affymetrix, Illumina [NR] (imputed)	N
1826	chr1	162764748	162764749	rs1892125	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1892125-G	0.848936	4E-8		0.0686649	[0.044-0.094] increase	Affymetrix [11014269] (imputed)	N
1826	chr1	162789665	162789666	rs117537066	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs117537066-G	0.01916	2E-9	(CTSS)	0.01143	NR unit increase	Illumina [1671387] (imputed)	N
1827	chr1	162821290	162821291	rs1912453	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	1q23.3	C1orf110	rs1912453-?	0.41	9E-6		1.07	[1.04-1.11]	Affymetrix, Illumina [2708280] (imputed)	N
1827	chr1	162876199	162876200	rs12031519	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1q23.3	CCDC190, RGS4	rs12031519-A		3E-7		0.0069	[0.0042-0.0096] unit increase	Affymetrix [13304133] (imputed)	N
1827	chr1	162892923	162892924	rs2343506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q23.3		rs2343506-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1828	chr1	162926259	162926260	rs12405096	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	1q23.3	C1orf110	rs12405096-?	NR	5E-7				Affymetrix [5908111] (imputed)	N
1828	chr1	163027265	163027266	rs77369503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q23.3	NR	rs77369503-A	NR	9E-12		0.0462	[0.033-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1828	chr1	163038852	163038853	rs10917671	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	1q23.3		rs10917671-?	NR	9E-6		0.05	[0.026-0.074] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1828	chr1	163045748	163045749	rs67187358	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs67187358-G	0.3922	5E-9		0.1019	[0.068-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1828	chr1	163045748	163045749	rs67187358	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs67187358-G	0.085	8E-9		0.113	[0.075-0.151] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1828	chr1	163045748	163045749	rs67187358	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs67187358-G	0.3858	2E-49		0.1811	[0.16-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1828	chr1	163053288	163053289	rs2063142	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	1q23.3	RGS4, RGS5	rs2063142-?	NR	4E-6		0.29	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
1829	chr1	163057357	163057358	rs79820282	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1q23.3		rs79820282-?	NR	6E-6		1.0978426	[1.05447343050396-1.1429953883308]	Illumina [up to 7827597] (imputed)	N
1829	chr1	163075020	163075021	rs1507740	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA	1q23.3	intergenic	rs1507740-?	NR	5E-6	(AA)	0.013215	[0.0076-0.0189] unit increase	Illumina [at least 620901]	N
1829	chr1	163113877	163113878	rs3806368	34050200	Choi JW	2021-05-28	Sci Rep	Genetically determined hypoalbuminemia as a risk factor for hypertension: instrumental variable analysis.	Hypoalbuminemia	1,168 East Asian ancestry cases, 3,157 East Asian ancestry controls	NA		RGS5	rs3806368-A	0.575	9E-6	(dominant)	0.7		Affymetrix [519364]	N
1829	chr1	163141544	163141545	rs4620514	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs4620514-A	0.1365	1E-8		0.0984	[0.065-0.132] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1829	chr1	163141544	163141545	rs4620514	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4620514-A	0.5019	4E-18		0.1415	[0.11-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1829	chr1	163142554	163142555	rs12035879	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	1q23.3	RGS5	rs12035879-A	0.419	4E-6		0.048	[0.028-0.068] unit increase	Illumina [747076]	N
1829	chr1	163165028	163165029	rs2662776	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	1q23.3	RGS5	rs2662776-A	0.467	3E-6		0.066	[0.015-0.117] unit increase	Illumina [6391392] (imputed)	N
1830	chr1	163191306	163191314	rs902727464	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	1q23.3	NR	rs902727464-A	0.92	6E-7		0.478	[0.29-0.67] unit decrease	Illumina [5418572] (imputed)	N
1830	chr1	163239349	163239350	rs76121963	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q23.3	RGS5, NUF2	rs76121963-T	0.9853	4E-8		0.1609	[0.1-0.22] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1830	chr1	163251832	163251833	rs71519251	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	1q23.3	NR	rs71519251-A	0.16686500000000004	2E-9		0.0240397	[0.016-0.032] unit increase	Affymetrix [16577424] (imputed)	N
1830	chr1	163256608	163256609	rs34702488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q23.3	NR	rs34702488-A	0.17569999999999997	2E-11		0.0258822	[0.018-0.034] unit increase	Affymetrix [16577313] (imputed)	N
1830	chr1	163258424	163258425	rs3010368	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	1q23.3		rs3010368-T	NR	6E-6		0.441	unit increase	Illumina [NR] (imputed)	N
1830	chr1	163295677	163295678	rs6660538	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q23.3	NR	rs6660538-A	NR	9E-9		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1831	chr1	163343719	163343719	rs11428640	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	1q23.3	NR	rs11428640-CA	0.4271	3E-6		0.1469	[0.086-0.208] unit decrease	Illumina [10677593] (imputed)	N
1831	chr1	163344159	163344160	rs3013509	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs3013509-A	0.9313	2E-6		0.1214	[0.072-0.171] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1831	chr1	163344781	163344782	rs4475722	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4475722-A	0.1015	3E-51		0.4584	[0.4-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1831	chr1	163344781	163344782	rs4475722	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4475722-A	0.1013	3E-12		0.2094	[0.15-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1831	chr1	163344781	163344782	rs4475722	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4475722-A	0.1048	5E-80		0.3973	[0.36-0.44] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1831	chr1	163434749	163434750	rs3001080	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	1q23.3	intergenic	rs3001080-G	0.426	3E-6		0.082	[0.049-0.115] unit decrease	Illumina [621723]	N
1831	chr1	163435839	163435840	rs10917760	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	1q23.3	NUF2	rs10917760-T	0.98	3E-7		1.94	NR unit decrease	Affymetrix [352228] (imputed)	N
1831	chr1	163441285	163441286	rs4076764	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	1q23.3	RGS5	rs4076764-T	0.649	3E-9		0.033	[0.022-0.044] unit increase	Illumina [7428049] (imputed)	N
1832	chr1	163462686	163462687	rs114624413	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Geminocystis abundance in stool	5,959 Finnish ancestry individuals	NA	1q23.3		rs114624413-T	0.0197391	4E-8		0.134609	[0.087-0.182] unit decrease	Illumina [7980478] (imputed)	N
1832	chr1	163500710	163500711	rs3001089	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	1q23.3	NUF2	rs3001089-?	NR	5E-7	(AA)			Illumina [up to 701491] (imputed)	N
1832	chr1	163506279	163506280	rs55650308	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	1q23.3		rs55650308-A	0.05506	7E-6		1.881	[1.429-2.475]	Affymetrix [7975321] (imputed)	N
1832	chr1	163510374	163510375	rs2791133	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	1q23.3	Intergenic	rs2791133-T	NR	4E-6	(adjusted for total body fat)	0.102	[0.058-0.146] unit decrease	Illumina [8511049] (imputed)	N
1832	chr1	163530986	163530987	rs78119607	32881892	Lin SH	2020-09-03	PLoS One	Low-frequency variation near common germline susceptibility loci are associated with risk of Ewing sarcoma.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	NA	1q23.3	NR	rs78119607-A	0.021	2E-11				Illumina [16367531] (imputed)	N
1832	chr1	163533825	163533826	rs9659479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs9659479-A	0.9047	2E-12		0.1179	[0.085-0.151] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1832	chr1	163533825	163533826	rs9659479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs9659479-A	0.4939	1E-39		0.147	[0.13-0.17] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1832	chr1	163558923	163558924	rs114865909	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Hip circumference adjusted for BMI	5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American males, 758 African American males, 4,281 European ancestry males	1q23.3		rs114865909-T	0.985	5E-6		4.568	z score decrease	Illumina [NR] (imputed)	N
1832	chr1	163570555	163570556	rs116821950	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1q23.3	NR	rs116821950-T	NR	5E-6	(African)	0.7856	[0.45-1.12] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1833	chr1	163587354	163587355	rs10917813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs10917813-T	0.36918	5E-14				Affymetrix, Illumina [23467995] (imputed)	N
1833	chr1	163589207	163589208	rs6688053	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q23.3	NA	rs6688053-T	0.4445	4E-10		0.0123	[0.0084-0.0162] unit increase	NR [~ 27400000] (imputed)	N
1833	chr1	163589305	163589306	rs12564153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q23.3		rs12564153-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1833	chr1	163590533	163590534	rs10799939	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q23.3	NR	rs10799939-T	0.7857	2E-8		0.0197	[0.013-0.027] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1833	chr1	163626412	163626413	rs1289011	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q23.3	NR	rs1289011-C	0.5029	2E-8		0.01	[0.0065-0.0135] unit decrease	NR [~ 27400000] (imputed)	N
1833	chr1	163628167	163628168	rs76814166	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1q23.3	NUF2	rs76814166-C	0.14	3E-6	(African American)	0.26	0.15-0.36 unit decrease	Illumina [NR] (imputed)	N
1833	chr1	163675882	163675883	rs2760215	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q23.3	LOC100422212	rs2760215-T	0.4509	8E-12		0.0224	[0.016-0.029] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1833	chr1	163675882	163675883	rs2760215	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q23.3	LOC100422212	rs2760215-T	0.5034	6E-11		0.024985	[0.018-0.032] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1834	chr1	163711371	163711372	rs3904941	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q23.3	NR	rs3904941-A	0.548	6E-9		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1834	chr1	163727922	163727923	rs7521492	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1q23.3	NR	rs7521492-?		3E-9				NR [8377093]	N
1834	chr1	163727922	163727923	rs7521492	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1q23.3	Intergenic	rs7521492-?		1E-9				NR [6786993] (imputed)	N
1834	chr1	163727922	163727923	rs7521492	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1q23.3	intergenic	rs7521492-A		5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1834	chr1	163727922	163727923	rs7521492	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q23.3	NR	rs7521492-A	NR	4E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1834	chr1	163738346	163738347	rs10753629	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q23.3	intergenic	rs10753629-T	0.4663	1E-6	(EA)	0.0017	[0.0011-0.0023] unit increase	Affymetrix [NR] (imputed)	N
1834	chr1	163738949	163738950	rs3845534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q23.3		rs3845534-A	NR	4E-16		0.0151	[0.012-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1834	chr1	163738949	163738950	rs3845534	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q23.3	LOC100422212	rs3845534-A	0.5336	3E-17		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1834	chr1	163738949	163738950	rs3845534	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q23.3	LOC100422212	rs3845534-A	0.4909	1E-14		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1834	chr1	163739716	163739717	rs4442348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q23.3		rs4442348-G	NR	5E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1834	chr1	163739716	163739717	rs4442348	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q23.3	NR	rs4442348-G	0.494328	2E-11		0.012399	[0.0088-0.016] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1834	chr1	163739716	163739717	rs4442348	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q23.3	NR	rs4442348-G	0.493815	7E-11		0.012047	[0.0084-0.0157] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1834	chr1	163741787	163741788	rs2345962	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q23.3	NR	rs2345962-A	0.5	6E-16		0.0147	[0.011-0.018] unit decrease	NR [NR]	N
1834	chr1	163743171	163743172	rs4098171	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	1q23.3	LOC100422212, PBX1	rs4098171-C		2E-8		0.951	[NR]	Affymetrix [~ 79000000] (imputed)	N
1834	chr1	163745388	163745389	rs10737496	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	1q23.3	NUF2	rs10737496-C	0.444	7E-9		1.0557	[1.04-1.07]	Affymetrix, Illumina [7549318] (imputed)	N
1834	chr1	163745700	163745701	rs3856205	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q23.3	Intergenic	rs3856205-T	0.4699	4E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1834	chr1	163750903	163750904	rs2345964	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q23.3	intergenic	rs2345964-A	0.458	1E-6		1.05538	[1.03-1.08]	NR [9372253] (imputed)	N
1834	chr1	163751534	163751535	rs10917846	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q23.3	Intergenic	rs10917846-T	0.5295	3E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1834	chr1	163752687	163752688	rs8179328	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	1q23.3	NR	rs8179328-?		2E-8				NR [520857]	N
1834	chr1	163760256	163760257	rs7530102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q23.3	NR	rs7530102-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1834	chr1	163760256	163760257	rs7530102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q23.3		rs7530102-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1834	chr1	163776297	163776298	rs1348135	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1q23.3	NUF2, PBX1	rs1348135-C	0.95	9E-6	(African)	1.754386		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1834	chr1	163790450	163790451	rs10753630	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q23.3	NR	rs10753630-T	0.336	7E-8		0.006137	[0.0039-0.0084] unit increase	NR [9732723] (imputed)	N
1835	chr1	163855955	163855956	rs10917872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q23.3		rs10917872-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1835	chr1	163855955	163855956	rs10917872	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q23.3		rs10917872-?	NR	1E-26		0.021053	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1835	chr1	163859822	163859823	rs6674203	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q23.3	NR	rs6674203-C	0.059	4E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1835	chr1	163865549	163865550	rs114119990	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	1q23.3		rs114119990-A	0.95428	8E-7		0.0324495	[0.02-0.045] unit increase	Illumina [13900000] (imputed)	N
1835	chr1	163874233	163874234	rs1080789	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q23.3	LOC100422212	rs1080789-A	0.515709	1E-23		0.0183517	[0.015-0.022] unit increase	NR [13737936] (imputed)	N
1835	chr1	163874233	163874234	rs1080789	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q23.3		rs1080789-?	NR	7E-26		0.0207029	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1835	chr1	163874233	163874234	rs1080789	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q23.3	LOC100422212	rs1080789-A	0.516605	6E-8	(women)	0.0253052	[0.016-0.034] unit increase	NR [17166351] (imputed)	N
1835	chr1	163874233	163874234	rs1080789	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q23.3	LOC100422212	rs1080789-A	0.515885	1E-12		0.0225813	[0.016-0.029] unit increase	NR [17166351] (imputed)	N
1835	chr1	163927223	163927224	rs368441582	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium P abundance in stool	5,959 Finnish ancestry individuals	NA	1q23.3		rs368441582-A	0.0249113	3E-8		0.121705	[0.079-0.165] unit increase	Illumina [7980478] (imputed)	N
1835	chr1	163956502	163956503	rs424950	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	1q23.3	intergenic	rs424950-C	0.48	5E-6		0.076	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
1836	chr1	164062527	164062528	rs528903211	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	1q23.3		rs528903211-?	NR	1E-8				Illumina [19057004] (imputed)	N
1837	chr1	164116957	164116958	rs4657347	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs4657347-A	0.01568	2E-8	(NCL)	0.2569	NR unit increase	Illumina [1671387] (imputed)	N
1837	chr1	164119705	164119706	rs9787119	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs9787119-G	0.02265	2E-8	(NCL)	0.2309	NR unit increase	Illumina [1671387] (imputed)	N
1837	chr1	164123622	164123623	rs7538986	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q23.3	NR	rs7538986-T	0.0789664	5E-9		0.0334324	[0.022-0.045] unit decrease	NR [19129689] (imputed)	N
1837	chr1	164125848	164125849	rs1415451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q23.3		rs1415451-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1837	chr1	164194471	164194471	rs11396505	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1q23.3	NR	rs11396505-?	NR	5E-6		0.0886059	[0.051-0.127] unit increase	NR [13958389] (imputed)	N
1837	chr1	164208212	164208213	rs57382675	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	1q23.3	NR	rs57382675-A	0.76	3E-15		0.0641	[0.048-0.08] unit increase	Illumina [~ 10600000] (imputed)	N
1837	chr1	164213685	164213686	rs1556867	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1q23.3	PBX1	rs1556867-?	NR	5E-9		0.18052	[0.12-0.24] unit increase	NR [13958389] (imputed)	N
1837	chr1	164213685	164213686	rs1556867	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q23.3	NR	rs1556867-C		3E-19		0.12	[0.1-0.14] unit increase	NR [NR]	N
1837	chr1	164213685	164213686	rs1556867	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q23.3	PBX1, ALDH9A1, TMCO1	rs1556867-?		9E-48				Affymetrix, Illumina [NR] (imputed)	N
1837	chr1	164213685	164213686	rs1556867	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q23.3	5S_rRNA, PBX1	rs1556867-T	0.2641	1E-18		8.806	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1837	chr1	164213685	164213686	rs1556867	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	1q23.3	NUF2, PBX1	rs1556867-?	NR	3E-19		1.08	[1.062-1.098]	Illumina [13762925] (imputed)	N
1837	chr1	164214984	164214985	rs10917958	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q23.3	NR	rs10917958-T	0.232197	3E-11		0.0243164	[0.017-0.031] unit increase	NR [19129689] (imputed)	N
1838	chr1	164236389	164236390	rs79958639	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q23.3	NR	rs79958639-?		7E-6				Illumina [4322238] (imputed)	N
1838	chr1	164244274	164244275	rs79036927	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1q23.3	Intergenic	rs79036927-A	NR	1E-6	(between families)	4.896	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1838	chr1	164324084	164324085	rs750729995	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	1q23.3		rs750729995-?	NR	5E-8				Illumina [19057004] (imputed)	N
1838	chr1	164348611	164348612	rs74117915	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs74117915-A	0.9434	4E-9		0.1527	[0.1-0.2] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1838	chr1	164348611	164348612	rs74117915	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs74117915-A	0.7264	2E-10		0.1154	[0.08-0.151] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1839	chr1	164367804	164367805	rs2821411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q23.3		rs2821411-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1839	chr1	164394047	164394048	rs1489288	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q23.3	NR	rs1489288-?	NR	2E-13				Affymetrix [NR]	N
1839	chr1	164480413	164480414	rs68096672	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q23.3	NR	rs68096672-C	0.147365	4E-20		0.0398993	[0.031-0.048] unit decrease	NR [19129689] (imputed)	N
1839	chr1	164491791	164491792	rs10918023	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs10918023-T	0.6918	2E-7		0.0651	[0.041-0.089] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1839	chr1	164491791	164491792	rs10918023	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs10918023-T	0.2667	3E-33		0.2261	[0.19-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1839	chr1	164491902	164491903	rs12143237	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q23.3	NR	rs12143237-A	0.243762	2E-28		0.0400039	[0.033-0.047] unit decrease	NR [19129689] (imputed)	N
1840	chr1	164510139	164510140	rs3901523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q23.3		rs3901523-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1q23.3	NR	rs2275558-A	0.2212	6E-9		0.2335	[0.15-0.31] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q23.3	PBX1	rs2275558-A	0.210289	3E-11		0.020059442	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q23.3	PBX1	rs2275558-A	0.210123	3E-15		0.023922011	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs2275558-G	0.788965	6E-17				Affymetrix, Illumina [17210439] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q23.3	NR	rs2275558-G	0.788266	2E-20		0.023874	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1840	chr1	164529119	164529120	rs2275558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q23.3		rs2275558-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1840	chr1	164529284	164529288	rs141669515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q23.3	PBX1	rs141669515-G	0.156642	1E-9		0.021324353	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1840	chr1	164529665	164529666	rs2275560	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q23.3	NR	rs2275560-G	0.744345	1E-8		0.00762452	[0.0047-0.0105] unit increase	Affymetrix [16582621] (imputed)	N
1840	chr1	164529665	164529666	rs2275560	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q23.3	NR	rs2275560-G	0.744345	3E-7		0.00722995	[0.0041-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
1840	chr1	164529665	164529666	rs2275560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q23.3		rs2275560-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1840	chr1	164558511	164558512	rs10918048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q23.3	PBX1	rs10918048-T	0.122211	2E-9		0.020697773	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1840	chr1	164558511	164558512	rs10918048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q23.3	NR	rs10918048-T	0.123732	2E-10		0.019033	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1840	chr1	164558926	164558927	rs1780334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q23.3		rs1780334-A	NR	4E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1840	chr1	164560944	164560945	rs79768173	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q23.3	NR	rs79768173-T	0.0562687	5E-13		0.0477917	[0.035-0.061] unit decrease	NR [19129689] (imputed)	N
1840	chr1	164605624	164605625	rs149700261	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PBX1	rs149700261-?	NR	1E-8	(female)	0.58741	[NR] unit increase	Affymetrix [NR] (imputed)	N
1840	chr1	164608824	164608825	rs1780350	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q23.3		rs1780350-A	0.0782	4E-7		0.0937	[0.058-0.13] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1840	chr1	164608824	164608825	rs1780350	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs1780350-A	0.3984	1E-26		0.1211	[0.099-0.143] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1840	chr1	164621514	164621515	rs2800778	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1q23.3	PBX1	rs2800778-T	0.944	2E-21		0.53	[0.42-0.63] unit increase	Affymetrix [339439]	N
1841	chr1	164689761	164689762	rs1387389	23319801	Rafiq S	2013-01-14	Cancer Res	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 European ancestry early-onset cases	1,516 European ancestry early-onset cases	1q23.3	PBX1	rs1387389-?	0.36	4E-6		1.28	[1.16-1.43]	Illumina [487496]	N
1841	chr1	164699721	164699722	rs1038679	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	1q23.3	PBX1	rs1038679-?	NR	3E-6		1.95	[1.47-2.57]	Illumina [8600000] (imputed)	N
1841	chr1	164703234	164703235	rs7532552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	1q23.3	NR	rs7532552-?	NR	2E-6		0.2049	[0.12-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
1841	chr1	164723911	164723912	rs116080577	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PBX1	rs116080577-?	NR	3E-15		3.12753	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1841	chr1	164732726	164732727	rs9660091	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q23.3		rs9660091-G	0.612	7E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1841	chr1	164738726	164738727	rs10494421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q23.3	PBX1, RP11-506O24.1	rs10494421-T	NR	5E-8		0.0236976	[0.015-0.032] unit increase	Affymetrix [319769] (imputed)	N
1841	chr1	164738726	164738727	rs10494421	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q23.3	NR	rs10494421-T	0.1202	8E-12		0.0182	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1841	chr1	164739170	164739171	rs6670655	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	1q23.3	PBX1	rs6670655-T	0.18	3E-6		1.26	[0.74-1.78] cm increase	Affymetrix [2073674] (imputed)	N
1841	chr1	164739413	164739414	rs12732181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q23.3	NR	rs12732181-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1841	chr1	164739413	164739414	rs12732181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q23.3	NR	rs12732181-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1841	chr1	164740098	164740099	rs2171690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q23.3	PBX1, RP11-506O24.1	rs2171690-C	NR	3E-11		0.0190267	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1841	chr1	164740098	164740099	rs2171690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q23.3	PBX1, RP11-506O24.1	rs2171690-C	NR	1E-11		0.0193835	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
1841	chr1	164740098	164740099	rs2171690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q23.3	NR	rs2171690-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1841	chr1	164740098	164740099	rs2171690	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q23.3	RP11-506O24.1	rs2171690-T	0.5352	1E-11		0.1181	[0.084-0.152] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1841	chr1	164740404	164740405	rs2279469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q23.3	PBX1, RP11-506O24.1	rs2279469-C	NR	3E-8		0.0155749	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1841	chr1	164740404	164740405	rs2279469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q23.3	PBX1, RP11-506O24.1	rs2279469-C	NR	2E-8		0.0158466	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1841	chr1	164740404	164740405	rs2279469	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q23.3	NR	rs2279469-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1841	chr1	164740404	164740405	rs2279469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q23.3		rs2279469-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1842	chr1	164775800	164775801	rs10800052	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 42)	19,670 European ancestry individuals	NA	1q23.3		rs10800052-?	NR	2E-8				NR [9705931] (imputed)	N
1842	chr1	164800872	164800873	rs9887954	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs9887954-A	0.8726	2E-10		0.1507	[0.1-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1842	chr1	164816725	164816726	rs6426881	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q23.3	PBX1	rs6426881-T	NR	8E-6	(sleep offset, weekdays)	0.2486	[0.14-0.36] unit increase	Affymetrix [7141204] (imputed)	N
1842	chr1	164869868	164869869	rs12735006	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q23.3	Intergenic	rs12735006-A	0.7729	7E-9		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1843	chr1	164985755	164985756	rs140743827	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	9,977 Hispanic/Latino individuals	NA	1q23.3		rs140743827-A	NR	6E-8		1.696	[1.08-2.31] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1843	chr1	164985755	164985756	rs140743827	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	1q23.3	intergenic	rs140743827-A	0.018	2E-7	(Hispanic, men)	0.428	[0.27-0.59] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1843	chr1	164985755	164985756	rs140743827	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	1q23.3	NR	rs140743827-A	NR	5E-6	(Hispanic)	0.218	[0.12-0.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1843	chr1	164995712	164995713	rs4387163	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4387163-A	0.877	1E-39		0.3173	[0.27-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1843	chr1	164995712	164995713	rs4387163	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q23.3		rs4387163-A	0.8721	4E-68		0.2859	[0.25-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1843	chr1	164995712	164995713	rs4387163	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q23.3	NR	rs4387163-A	0.57649	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
1843	chr1	164995712	164995713	rs4387163	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	1q23.3	NR	rs4387163-G	0.860194	4E-14		0.161157	[0.12-0.2] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1843	chr1	165017842	165017843	rs113093597	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	1q23.3	intergenic	rs113093597-A	0.017	1E-7		6.144	[3.137-12.03]	Illumina [7585874] (imputed)	N
1844	chr1	165027341	165027342	rs6426893	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	1q23.3	NR	rs6426893-?	NR	8E-29		0.03318054	[0.027-0.039] unit increase	Illumina [30613845] (imputed)	N
1844	chr1	165055012	165055013	rs187234497	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	1q23.3	NR	rs187234497-G	0.012	5E-6		3.978	[2.198-7.199]	Illumina [7585599] (imputed)	N
1844	chr1	165107978	165107979	rs60624478	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	1q23.3	LMX1A, PBX1	rs60624478-A	NR	6E-6	(PhysVAS)	1.17	[0.66-1.68] unit increase	Illumina [586062]	N
1844	chr1	165109130	165109131	rs7525101	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	1q23.3	LMX1A	rs7525101-T	43.61	2E-10	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1844	chr1	165109130	165109131	rs7525101	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	1q23.3		rs7525101-?	NR	2E-10		6.395034	z score increase	Affymetrix [NR] (imputed)	N
1844	chr1	165118760	165118761	rs7539883	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	1q23.3	intergenic	rs7539883-A	0.69	3E-6		7.43	NR mg increase	NR [NR] (imputed)	N
1844	chr1	165119791	165119792	rs10753661	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1q23.3	NR	rs10753661-A	0.702	9E-9		0.011386297	[0.0075-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
1844	chr1	165119791	165119792	rs10753661	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	1q23.3	LMX1A	rs10753661-A	0.684	8E-9		0.0157	[0.01-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1844	chr1	165119791	165119792	rs10753661	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1q23.3	NR	rs10753661-A	0.684	6E-9		0.00824938	[0.0055-0.011] unit decrease	NR [~ 9732723] (imputed)	N
1844	chr1	165119791	165119792	rs10753661	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1q23.3	NR	rs10753661-A	0.684	4E-8		0.008638128	[0.0056-0.0117] unit decrease	NR [~ 10000000] (imputed)	N
1844	chr1	165140413	165140414	rs74835610	30079052	Rujescu D	2018-07-20	Front Neurol	Genome-Wide Association Study in Vestibular Neuritis: Involvement of the Host Factor for HSV-1 Replication.	Vestibular neuritis	131 European ancestry cases, 2,609 German ancestry controls	NA	1q23.3	LMX1A	rs74835610-?	0.015	8E-11		7.462686	[4.08-13.7]	Affymetrix, Illumina [7813927] (imputed)	N
1845	chr1	165168868	165168869	rs56315120	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	1q23.3	LMX1A	rs56315120-A		8E-7	(DLCO per alveolar volume)	0.05	[0.032-0.068] unit decrease	Affymetrix, Illumina [NR]	N
1845	chr1	165180088	165180089	rs1532815	21177773	Moyer AM	2010-12-22	Toxicol Sci	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	1q23.3	LMX1A	rs1532815-?	0.34	6E-7				Affymetrix, Illumina [1348864]	N
1845	chr1	165191701	165191702	rs16841280	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q23.3	NR	rs16841280-C	0.074	8E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1845	chr1	165198325	165198326	rs1807837	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q23.3	LMX1A	rs1807837-C	0.08777	4E-6				Illumina [4404269] (imputed)	N
1845	chr1	165216673	165216674	rs747358876	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	1q23.3		rs747358876-?	NR	5E-8				Illumina [19057004] (imputed)	N
1845	chr1	165217355	165217356	rs1506946	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Verbal intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	1q23.3	NR	rs1506946-A	NR	4E-6		1.73	[1-2.45] unit decrease	Illumina [2141747] (imputed)	N
1845	chr1	165221695	165221696	rs1553607	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	1q23.3	NR	rs1553607-A	0.5343	6E-7		0.0099	[0.006-0.0138] unit increase	NR [~ 27400000] (imputed)	N
1845	chr1	165241021	165241022	rs79177166	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q23.3	NR	rs79177166-A	0.0122	2E-8	(SAA1)	0.191	NR unit increase	Illumina [1671387] (imputed)	N
1845	chr1	165256013	165256014	rs7540476	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q23.3		rs7540476-C	0.41	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
1845	chr1	165256013	165256014	rs7540476	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q23.3	NR	rs7540476-C	0.3986	3E-8				NR [9056863] (imputed)	N
1846	chr1	165317731	165317732	rs10918148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q23.3	LMX1A	rs10918148-C	NR	7E-9		0.0165048	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1846	chr1	165321567	165321568	rs6426912	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q23.3	NR	rs6426912-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1846	chr1	165321567	165321568	rs6426912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q23.3		rs6426912-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1846	chr1	165321567	165321568	rs6426912	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q23.3	NR	rs6426912-T	0.1087	6E-11		0.0191	[0.013-0.025] unit increase	NR [~ 27400000] (imputed)	N
1846	chr1	165322965	165322966	rs67338345	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q23.3	Intergenic	rs67338345-G	0.6986	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1846	chr1	165325826	165325827	rs6665572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q23.3	LMX1A	rs6665572-C	NR	6E-12		0.0252147	[0.018-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1846	chr1	165325826	165325827	rs6665572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q23.3		rs6665572-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1846	chr1	165328555	165328555	rs111353859	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1q23.3	LMX1A, RXRG	rs111353859-?	NR	4E-9		0.5171	[0.34-0.69] unit increase	Affymetrix [11100000] (imputed)	N
1846	chr1	165331299	165331300	rs745582874	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	1q23.3		rs745582874-?	NR	4E-8				Illumina [19057004] (imputed)	N
1846	chr1	165356894	165356895	rs71628382	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q23.3	NR	rs71628382-A	0.055	9E-7	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
1846	chr1	165360113	165360114	rs12739596	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q23.3	Intergenic	rs12739596-A	0.7561	2E-8	(MTAG)	0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1846	chr1	165377551	165377552	rs2134095	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	1q23.3	RXRG	rs2134095-?		7E-6				Affymetrix, Illumina [NR]	N
1846	chr1	165377602	165377603	rs116521297	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q23.3	NR	rs116521297-?	NR	8E-6		7.734	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1846	chr1	165378115	165378116	rs78093250	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q23.3	NR	rs78093250-?	NR	8E-6		7.734	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1846	chr1	165380622	165380623	rs10489744	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	1q23.3	RXRG	rs10489744-?	NR	2E-7				Affymetrix, Illumina [NR] (imputed)	N
1846	chr1	165383760	165383761	rs157864	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	1q23.3	RXRG	rs157864-T	0.1415	9E-6		0.0443	NR unit increase	NR [NR] (imputed)	N
1846	chr1	165392668	165392669	rs61800588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q23.3	RXRG	rs61800588-C	NR	2E-8		0.0163104	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1846	chr1	165392668	165392669	rs61800588	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q23.3	NR	rs61800588-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1846	chr1	165392813	165392814	rs157874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q23.3	RXRG	rs157874-G	NR	1E-9		0.0190805	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1846	chr1	165394086	165394087	rs41419946	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	1q23.3	NR	rs41419946-?		4E-6	(genus_Fusobacterium)	1.026148	[0.62-1.43] unit decrease	Affymetrix [211319]	N
1846	chr1	165394881	165394882	rs466639	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	1q23.3	NR	rs466639-T	0.2085	2E-6	(Japanese)	0.052	[0.03-0.074] year decrease	Illumina [at least 532488] (imputed)	N
1846	chr1	165394881	165394882	rs466639	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1q23.3	RXRG	rs466639-C	0.87	2E-24		0.08	[0.066-0.094] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1846	chr1	165394881	165394882	rs466639	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	1q23.3	RXRG	rs466639-T	0.13	1E-13		4.2	[3.02-5.38] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1846	chr1	165398743	165398744	rs157877	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	1q23.3	NR	rs157877-A	0.2086	2E-6	(Japanese)	0.052	[0.03-0.074] year decrease	Illumina [at least 532488] (imputed)	N
1846	chr1	165403902	165403903	rs285480	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	1q23.3	RXRG	rs285480-?	NR	4E-7	(ZKPQ-sensation seeking)			Affymetrix [702866]	N
1846	chr1	165409094	165409095	rs10800098	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	1q23.3	RXRG	rs10800098-A	0.05	4E-6		3.29	[2.08-5.20]	Illumina [291119]	N
1846	chr1	165410784	165410785	rs2194899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q23.3		rs2194899-?	NR	5E-44				NR [~ 8900000] (imputed)	N
1847	chr1	165413643	165413644	rs100537	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	1q23.3	RXRG	rs100537-?	NR	4E-15		0.034	[0.042-0.026] unit decrease	Illumina [12039492]	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	7E-9	(230 ms)	0.0754015	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	4E-8	(234 ms)	0.0728822	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	4E-8	(228 ms)	0.0716549	[0.046-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	4E-8	(224 ms)	0.0711621	[0.045-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	4E-8	(214 ms)	0.0709343	[0.045-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	3E-8	(240 ms)	0.0728654	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	3E-8	(238 ms)	0.0727338	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	3E-8	(236 ms)	0.0725766	[0.046-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	2E-8	(222 ms)	0.0732349	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	2E-8	(220 ms)	0.0731327	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	2E-8	(218 ms)	0.0733168	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	2E-8	(216 ms)	0.0729909	[0.047-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165421591	165421592	rs10918192	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q23.3	RXRG	rs10918192-A	0.95252	1E-8	(232 ms)	0.0749826	[0.049-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1847	chr1	165448156	165448157	rs10918196	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q23.3	LOC400794	rs10918196-C	0.41	9E-6		93.94	[NR] unit increase	Illumina [2380200] (imputed)	N
1847	chr1	165466876	165466877	rs2553640	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q23.3	RXRG	rs2553640-?	NR	9E-6	(gamma aminoisobutyric acid)	0.31390497	[0.18-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1847	chr1	165492326	165492327	rs4657451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q24.1		rs4657451-A	NR	1E-8		0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1847	chr1	165496480	165496481	rs285460	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q24.1	NR	rs285460-?	NR	7E-38				Affymetrix [NR]	N
1847	chr1	165498288	165498289	rs16846410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.1		rs16846410-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1847	chr1	165500334	165500335	rs1425754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.1	RXRG	rs1425754-?	NR	1E-6	(glycocholate)	0.18360133	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1847	chr1	165510532	165510533	rs7554904	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.1	MGST3	rs7554904-?	NR	4E-6	(glycodeoxycholate)	0.18274148	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1847	chr1	165510532	165510533	rs7554904	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.1	MGST3	rs7554904-?	NR	2E-6	(tauro deoxycholate)	0.1863261	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1847	chr1	165541641	165541642	rs12121840	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	1q24.1	NR	rs12121840-C		2E-6		0.2692	[0.16-0.38] SD units decrease	NR [10700000] (imputed)	N
1848	chr1	165597310	165597311	rs10733045	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	6,152 African American individuals	NA	1q24.1	NR	rs10733045-G	0.8865	5E-9		0.0252	[0.017-0.034] unit decrease	Affymetrix, Illumina [12990599] (imputed)	N
1848	chr1	165599459	165599460	rs10737515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.1		rs10737515-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1848	chr1	165616587	165616588	rs6686643	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	1q24.1	MGST3	rs6686643-?	NR	7E-6		0.003	[NR] unit increase	Illumina [478011]	N
1848	chr1	165622145	165622146	rs16848876	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.1		rs16848876-A	0.373	5E-10		0.1064	[0.073-0.14] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1848	chr1	165622145	165622146	rs16848876	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	1q24.1		rs16848876-A	0.0775	4E-8		0.1026	[0.066-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1848	chr1	165622145	165622146	rs16848876	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.1		rs16848876-A	0.3669	3E-20		0.1106	[0.087-0.134] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1848	chr1	165627539	165627540	rs72698044	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	1q24.1	NR	rs72698044-?	NR	4E-6		0.0077	[0.0044-0.011] unit decrease	Affymetrix [9658292] (imputed)	N
1848	chr1	165672103	165672104	rs77570135	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	1q24.1		rs77570135-G	NR	3E-6		1.77		Illumina [7574753] (imputed)	N
1848	chr1	165672103	165672104	rs77570135	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	1q24.1		rs77570135-?	NR	3E-6				Illumina [1365315]	N
1849	chr1	165684677	165684678	rs116089225	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1q24.1	TMCO1	rs116089225-C	0.99	1E-22		0.744	[0.6-0.89] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1849	chr1	165687204	165687205	rs4656461	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q24.1	LOC440700, TMCO1	rs4656461-G	0.1244	1E-43		0.2908	[0.25-0.33] unit increase	Affymetrix [~ 11900000] (imputed)	N
1849	chr1	165687204	165687205	rs4656461	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	1q24.1	TMCO1	rs4656461-G	NR	5E-13		1.38	[1.30-1.46]	Illumina [7594768] (imputed)	N
1849	chr1	165687204	165687205	rs4656461	21532571	Burdon KP	2011-05-01	Nat Genet	Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1.	Glaucoma	590 European ancestry cases, 3,956 European ancestry controls	892 European ancestry advanced cases, 4,582 European ancestry less severe cases	1q24.1	TMCO1	rs4656461-G	0.12	6E-14		1.51	[1.35-1.68]	Illumina [298778]	N
1849	chr1	165691319	165691320	rs6668108	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	1q24.1	LOC440700, TMCO1	rs6668108-?	NR	7E-30		0.23	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1849	chr1	165694896	165694897	rs7524755	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	1q24.1	TMCO1	rs7524755-T		8E-41		1.37	[1.31-1.43]	Affymetrix [at least 665500] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1q24.1	TMCO1	rs10918274-T	0.12	2E-6				Affymetrix [at least 8002429] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1q24.1	TMCO1	rs10918274-T	0.12	4E-67				Affymetrix, Illumina [8002429] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	1q24.1	TMCO1	rs10918274-T	0.12	6E-92		1.37	NR	Affymetrix, Illumina [8002429] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	1q24.1	TMCO1	rs10918274-T	0.12	4E-43		1.37	NR	Affymetrix [at least 8002429] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1q24.1	TMCO1	rs10918274-?	NR	8E-68		0.3329	[0.3-0.37] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	1q24.1	TMCO1	rs10918274-?	NR	4E-51		1.3760265	[1.32002146786484-1.43440768365846]	Affymetrix [up to 40000000] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1q24.1	TMCO1	rs10918274-T	0.125	2E-87		0.377	[0.34-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	1q24.1	TMCO1	rs10918274-T	NR	6E-12		0.25	[0.17-0.33] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1849	chr1	165714415	165714416	rs10918274	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	1q24.1	TMCO1	rs10918274-T	NR	2E-12	(EA)	0.27	[0.19-0.35] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1849	chr1	165718978	165718979	rs7555523	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	1q24.1	TMCO1	rs7555523-?	NR	2E-18		0.21	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1849	chr1	165718978	165718979	rs7555523	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		1q24.1	NR	rs7555523-A		1E-12				Affymetrix, Illumina [6425680] (imputed)	N
1849	chr1	165718978	165718979	rs7555523	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	1q24.1	TMCO1	rs7555523-C	NR	2E-9		0.235	[0.16-0.31] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1849	chr1	165718978	165718979	rs7555523	22570627	van Koolwijk LM	2012-05-03	PLoS Genet	Common genetic determinants of intraocular pressure and primary open-angle glaucoma.	Intraocular pressure	11,972 European ancestry individuals	7,482 European ancestry individuals	1q24.1	TMCO1	rs7555523-C	0.12	2E-8		0.28	[0.18-0.37] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1849	chr1	165732660	165732661	rs4657476	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	1q24.1	TMCO1	rs4657476-T	NR	2E-32		0.755935	[0.71-0.8]	Illumina [NR] (imputed)	N
1849	chr1	165732660	165732661	rs4657476	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	1q24.1	TMCO1	rs4657476-T	NR	9E-18		0.692671	[0.61-0.78]	Illumina [NR] (imputed)	N
1849	chr1	165732660	165732661	rs4657476	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Intraocular pressure (corneal compensated)	6,125 Icelandic ancestry individuals	NA	1q24.1	TMCO1	rs4657476-?	NR	3E-7		0.157	unit increase	Illumina [NR]	N
1849	chr1	165732660	165732661	rs4657476	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q24.1	TMCO1	rs4657476-C	0.1245	4E-45		0.2961	[0.25-0.34] unit increase	Affymetrix [~ 11900000] (imputed)	N
1849	chr1	165736174	165736175	rs4657477	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	1q24.1	LOC100147773	rs4657477-T	NR	3E-9		0.727166	[0.62-0.83]	Illumina [NR] (imputed)	N
1849	chr1	165736879	165736880	rs7518099	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	1q24.1	TMCO1	rs7518099-C	0.122	2E-11		0.273	[0.19-0.35] mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1849	chr1	165736879	165736880	rs7518099	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	1q24.1	LOC100147773, TMCO1	rs7518099-T	NR	2E-52		1.369863	[1.32-1.43]	Affymetrix [up to 40000000] (imputed)	N
1849	chr1	165736879	165736880	rs7518099	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	1q24.1	TMCO1	rs7518099-G	0.14	8E-8		0.94	[0.55-1.33] mmHg increase	Illumina [466573]	N
1849	chr1	165737703	165737704	rs2790053	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	1q24.1	LOC100147773	rs2790053-C	NR	2E-29		1.31364	[1.27-1.36]	Illumina [NR] (imputed)	N
1849	chr1	165737703	165737704	rs2790053	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1q24.1	TMCO1	rs2790053-C	NR	2E-122		0.245	unit increase	Illumina [15409056] (imputed)	N
1849	chr1	165738462	165738463	rs2790052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	1q24.1		rs2790052-C	NR	1E-29		0.232	[0.19-0.27] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1849	chr1	165738462	165738463	rs2790052	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1q24.1	NR	rs2790052-G		7E-57		0.36	[0.32-0.4] unit increase	NR [NR]	N
1849	chr1	165739597	165739598	rs2814471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	1q24.1		rs2814471-T	NR	4E-39		0.3921	[0.33-0.45] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1849	chr1	165739597	165739598	rs2814471	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	1q24.1	TMCO1	rs2814471-C	0.124329	1E-39		0.39859462	[0.34-0.46] unit increase	Affymetrix [7288503] (imputed)	N
1849	chr1	165739597	165739598	rs2814471	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	1q24.1	TMCO1	rs2814471-C		8E-44		1.39	1.32-1.45	NR [NR] (imputed)	N
1849	chr1	165739597	165739598	rs2814471	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	1q24.1	TMCO1	rs2814471-C	NR	2E-62		1.37	1.32-1.42	Affymetrix [at least 665500] (imputed)	N
1849	chr1	165742415	165742416	rs2790051	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	1q24.1	RP11-466F5.8	rs2790051-G	0.445238571	2E-6		0.134174	[0.079-0.189] unit decrease	Illumina [6969139] (imputed)	N
1849	chr1	165743522	165743523	rs2790049	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	1q24.1	TMCO1	rs2790049-A	NR	1E-62		1.35649	[1.32-1.39]	Affymetrix, Illumina [14822926] (imputed)	N
1850	chr1	165831648	165831649	rs4657482	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	1q24.1	UCK2	rs4657482-A	NR	6E-6		1.43	[1.22-1.67]	Illumina [NR]	N
1850	chr1	165831648	165831649	rs4657482	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	1q24.1	intergenic	rs4657482-A	0.33	2E-6		1.14	[0.99-1.31]	Illumina [307666]	N
1850	chr1	165832275	165832276	rs10918297	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q24.1	UCK2	rs10918297-G	NR	8E-7		1.056859	NR	Affymetrix, Illumina [8278136] (imputed)	N
1850	chr1	165873391	165873392	rs3790672	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	1q24.1	UCK2	rs3790672-C	0.28	2E-14		1.27	1.20-1.35	Illumina [9210350] (imputed)	N
1850	chr1	165873391	165873392	rs3790672	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	1q24.1	UCK2	rs3790672-C	0.29	5E-11		1.2	[1.14-1.25]	Illumina [at least 371504] (imputed)	N
1850	chr1	165873391	165873392	rs3790672	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	1q24.1	UCK2	rs3790672-C	0.281	2E-7		1.23	[NR]	Illumina [610240]	N
1850	chr1	165873391	165873392	rs3790672	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	1q24.1	UCK2	rs3790672-C	0.28	2E-8		1.2	[1.09-1.33]	Illumina [307291]	N
1851	chr1	166035855	166035856	rs4262520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q24.1	Intergenic	rs4262520-A	0.6876	5E-11	(MTAG)	0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1851	chr1	166035855	166035856	rs4262520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q24.1	Intergenic	rs4262520-A	0.6876	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1851	chr1	166038841	166038842	rs61835088	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls, 2,712 European ancestry cases, 915 European ancestry controls	572 African American cases, 416 African American controls, 759 European ancestry cases, 1,620 European ancestry controls	1q24.1	FAM78B	rs61835088-T	0.14	4E-9		0.87	[NR]	Illumina [NR] (imputed)	N
1852	chr1	166076918	166076919	rs34650980	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.1		rs34650980-A	0.0694	2E-17		0.278	[0.21-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1852	chr1	166076918	166076919	rs34650980	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.1		rs34650980-A	0.0746	2E-26		0.2329	[0.19-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1852	chr1	166101601	166101602	rs12065238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q24.1	Intergenic	rs12065238-A	0.1697	2E-10	(MTAG)	0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr1	166101601	166101602	rs12065238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q24.1		rs12065238-A	0.1687	4E-8	(conditional-joint)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr1	166101601	166101602	rs12065238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q24.1	Intergenic	rs12065238-A	0.1687	7E-10	(MTAG)	0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr1	166118882	166118883	rs16856648	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q24.1		rs16856648-C	0.19	7E-19		8.88	z score increase	Affymetrix [9061022] (imputed)	N
1852	chr1	166118882	166118883	rs16856648	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q24.1	NR	rs16856648-C	0.2164	2E-16				NR [9056863] (imputed)	N
1852	chr1	166167722	166167723	rs115688341	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q24.1	NR	rs115688341-?	NR	4E-6		4.619	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1853	chr1	166261927	166261928	rs2798421	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q24.1	FAM78B	rs2798421-A	0.276	2E-8		0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1853	chr1	166317019	166317021	rs34762195	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q24.1	NR	rs34762195-AAT		5E-6		0.1215	[0.07-0.173] SD units increase	NR [10700000] (imputed)	N
1855	chr1	166485890	166485891	rs6684311	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Cardiovascular event in rheumatoid arthritis	467 Spanish ancestry patients, 2,522 Spanish ancestry controls	NA	1q24.1	RP11-276E17.2	rs6684311-G	0.189	3E-7		1.68	[1.38-2.05]	Illumina [63089444] (imputed)	N
1855	chr1	166548316	166548317	rs1442502	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q24.1	NR	rs1442502-?	NR	9E-7				Affymetrix [NR]	N
1856	chr1	166594500	166594501	rs41269672	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	1q24.1	NR	rs41269672-?	NR	8E-6		0.01399	[0.0079-0.0201] unit decrease	Affymetrix [9658292] (imputed)	N
1856	chr1	166610028	166610028	rs138031614	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	1q24.1		rs138031614-?	NR	1E-5				Illumina [7401356] (imputed)	N
1856	chr1	166649075	166649076	rs565418	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs565418-?	NR	1E-7				Affymetrix [NR]	N
1856	chr1	166669935	166669936	rs513088	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q24.1	NR	rs513088-G	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1856	chr1	166693279	166693280	rs72703425	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q24.1	NR	rs72703425-G	0.01394	2E-8	(LUM)	0.2477	NR unit increase	Illumina [1671387] (imputed)	N
1857	chr1	166774996	166774997	rs858818	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the knee (with total joint replacement)	2,188 European ancestry cases, 9,939 European ancestry healthy controls	2,281 European ancestry cases, 9,194 European ancestry healthy controls	1q24.1	NR	rs858818-C	0.212156	5E-6		1.04	[0.95-1.15]	Illumina [270934]	N
1857	chr1	166777543	166777544	rs16858093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.1		rs16858093-C	0.12667	6E-9		0.019496372	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1857	chr1	166794216	166794217	rs2312236	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	1q24.1	POGK	rs2312236-T	0.056	3E-6	(Hispanic)	3.31	[2.81-3.81]	Illumina [21693469] (imputed)	N
1857	chr1	166828956	166828957	rs12562794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q24.1		rs12562794-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1857	chr1	166829516	166829517	rs151215751	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	1q24.1		rs151215751-?	NR	1E-12		0.338323	[0.23-0.45] unit increase	NR [9800000] (imputed)	N
1857	chr1	166829516	166829517	rs151215751	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	1q24.1		rs151215751-?	NR	1E-10		0.315652	[0.21-0.42] unit decrease	NR [9800000] (imputed)	N
1857	chr1	166829521	166829522	rs2272792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1q24.1		rs2272792-T	0.145988	5E-9		0.0280134	[0.019-0.037] unit increase	Illumina [13479091] (imputed)	N
1857	chr1	166838280	166838281	rs2294195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q24.1	DUTP6	rs2294195-C	0.201382	1E-9		0.016874481	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1857	chr1	166839173	166839174	rs4657609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q24.1	TADA1	rs4657609-A	0.201268	3E-11		0.018318178	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1857	chr1	166839173	166839174	rs4657609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q24.1	TADA1	rs4657609-A	0.201279	2E-15		0.02193839	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1857	chr1	166839173	166839174	rs4657609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q24.1	NR	rs4657609-A	0.199569	6E-17		0.019265	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1857	chr1	166839173	166839174	rs4657609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q24.1	NR	rs4657609-A	0.200105	7E-20		0.021945	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1857	chr1	166854637	166854637	rs11275896	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q24.1	NR	rs11275896-C	0.602833	1E-11		0.00596295	[0.0043-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1857	chr1	166854637	166854637	rs11275896	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q24.1	NR	rs11275896-C	0.602833	3E-7		0.00491718	[0.0031-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
1858	chr1	166856058	166856059	rs4656517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q24.1		rs4656517-A	NR	2E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1858	chr1	166861595	166861596	rs1040393	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q24.1	NR	rs1040393-C	NR	7E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1858	chr1	166870527	166870528	rs2235184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q24.1		rs2235184-T	NR	2E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1858	chr1	166944808	166944809	rs186023662	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q24.1		rs186023662-G	0.18	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
1858	chr1	166944808	166944809	rs186023662	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q24.1	NR	rs186023662-G	0.2201	4E-10				NR [9056863] (imputed)	N
1858	chr1	166944808	166944809	rs186023662	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	1q24.1		rs186023662-?	NR	6E-9				NR [9705931] (imputed)	N
1858	chr1	166951868	166951869	rs6688613	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	1q24.1	MAEL	rs6688613-T	0.24	3E-6	(EA, less than 25 years)	1.309	[1.170-1.465]	Affymetrix, Illumina [NR] (imputed)	N
1858	chr1	166956709	166956710	rs6669886	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q24.1		rs6669886-C	0.18	3E-12		7.0	z score increase	Affymetrix [9061022] (imputed)	N
1858	chr1	166956709	166956710	rs6669886	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q24.1		rs6669886-C	0.18	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
1858	chr1	166956709	166956710	rs6669886	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q24.1	POGK, TADA1, ILDR2, MAEL	rs6669886-?		5E-9				NR [7428630] (imputed)	N
1859	chr1	167038120	167038121	rs72689399	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (ANCA negative)	352 European ancestry cases, 6,688 European ancestry controls	94 European and unknown ancestry cases, 121 European and unknown ancestry controls	1q24.1	GPA33	rs72689399-?	NR	7E-10		1.78	NR unit increase	Affymetrix [9246221] (imputed)	N
1859	chr1	167046454	167046455	rs73028893	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q24.1	NR	rs73028893-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1859	chr1	167100360	167100361	rs7519927	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ CD8+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.1		rs7519927-A	0.59677	2E-8		0.1548	[0.1-0.21] unit decrease	Illumina [18012714] (imputed)	N
1860	chr1	167135940	167135941	rs4075646	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q24.1	NR	rs4075646-T	NR	3E-8		1.068	[1.04-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1860	chr1	167156499	167156500	rs9803659	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	1q24.1	POU2F1	rs9803659-C	NR	4E-6	(ALT)	0.03	[0.018-0.042] U/L decrease	Affymetrix, Illumina [up to 496032]	N
1860	chr1	167163278	167163279	rs12739827	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.1		rs12739827-C	0.8469	2E-29		0.1738	[0.14-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1861	chr1	167295837	167295838	rs6427082	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	1q24.2	NR	rs6427082-T	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1861	chr1	167312408	167312409	rs2861451	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	1q24.2	POU2F1	rs2861451-?	NR	3E-6		0.22	[0.1-0.34] unit decrease	Illumina [at least 13000000] (imputed)	N
1861	chr1	167355434	167355435	rs2091248	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs2091248-C	0.8691	7E-19		0.2096	[0.16-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1861	chr1	167367192	167367193	rs7524019	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q24.2	POU2F1	rs7524019-C	0.508	3E-9		0.1036	[0.069-0.138] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1861	chr1	167367659	167367660	rs58957777	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	1q24.2	POU2F1	rs58957777-?	NR	7E-6		1.409	[0.58-2.24] unit decrease	Illumina [at least 13000000] (imputed)	N
1861	chr1	167376712	167376713	rs61806126	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs61806126-G	0.06339	1E-11		0.3863	[0.27-0.5] unit increase	Illumina [17954450] (imputed)	N
1861	chr1	167376712	167376713	rs61806126	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs61806126-G	0.06339	2E-11		0.3849	[0.27-0.5] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167395475	167395476	rs552304070	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1q24.2	CD247, POU2F1	rs552304070-A	0.932	6E-17		0.42	[0.33-0.52] unit increase	Affymetrix [339439]	N
1862	chr1	167397270	167397271	rs1917534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q24.2	NR	rs1917534-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1862	chr1	167399502	167399503	rs870873	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs870873-C	0.12744	1E-8		0.2369	[0.16-0.32] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167401120	167401121	rs554994388	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Trypanosoma cruzi infection	1,019 Colombian ancestry cases, 1,104 Colombian ancestry controls	NA	1q24.2		rs554994388-G	0.03	5E-7		1.33	[1.19-1.49]	Illumina [7846902] (imputed)	N
1862	chr1	167401810	167401811	rs61806131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs61806131-T	0.11654	4E-12		0.2968	[0.21-0.38] unit increase	Illumina [17947121] (imputed)	N
1862	chr1	167403843	167403844	rs953808	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs953808-C	0.86534	1E-8		0.2257	[0.15-0.3] unit increase	Illumina [18012714] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06921	1E-11		0.3699	[0.26-0.48] unit decrease	Illumina [17954415] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06957	1E-10		0.3526	[0.25-0.46] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	1E-13		0.4033	[0.3-0.51] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated & secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	1E-12		0.3837	[0.28-0.49] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06957	1E-10		0.3485	[0.24-0.45] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06921	5E-9		0.3186	[0.21-0.42] unit decrease	Illumina [17947121] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	5E-10		0.3379	[0.23-0.44] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	7E-13		0.3893	[0.28-0.5] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	5E-12		0.3737	[0.27-0.48] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	3E-12		0.3792	[0.27-0.49] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	3E-9		0.3228	[0.22-0.43] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405063	167405064	rs115697342	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs115697342-T	0.06919	1E-11		0.3705	[0.26-0.48] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167405417	167405418	rs1723022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1q24.2		rs1723022-T	NR	3E-9		0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1862	chr1	167405417	167405418	rs1723022	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1q24.2	CD247	rs1723022-T	0.370454	7E-10		0.059215497	[0.04-0.078] unit increase	Affymetrix [7288503] (imputed)	N
1862	chr1	167405417	167405418	rs1723022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1q24.2		rs1723022-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1862	chr1	167406510	167406511	rs548753158	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs548753158-A	0.01053	4E-11		0.9409	[0.66-1.22] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167406510	167406511	rs548753158	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs548753158-A	0.0105	1E-8		0.8068	[0.53-1.08] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167406510	167406511	rs548753158	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs548753158-A	0.0105	2E-11		0.9504	[0.67-1.23] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167406512	167406513	rs2949670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949670-T	0.86366	5E-12		0.2838	[0.2-0.36] unit increase	Illumina [17945511] (imputed)	N
1862	chr1	167406512	167406513	rs2949670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949670-T	0.86387	5E-10		0.2547	[0.17-0.33] unit increase	Illumina [17947121] (imputed)	N
1862	chr1	167406512	167406513	rs2949670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949670-T	0.86391	7E-9		0.2374	[0.16-0.32] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167406512	167406513	rs2949670	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949670-T	0.86391	7E-12		0.2813	[0.2-0.36] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167407516	167407517	rs2480679	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2480679-G	0.8651800000000001	1E-10		0.2652	[0.19-0.35] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167408669	167408670	rs840016	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	1q24.2	CD247	rs840016-C	0.58	2E-6		1.11	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1862	chr1	167411383	167411384	rs864537	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	1q24.2	CD247	rs864537-?	NR	2E-11				Illumina [472854]	N
1862	chr1	167411383	167411384	rs864537	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q24.2	CD247	rs864537-?	0.61	4E-7		1.1	[1.06-1.15]	Illumina [292387]	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11939	7E-14		0.3178	[0.24-0.4] unit increase	Illumina [17954415] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11939	4E-22		0.4102	[0.33-0.49] unit increase	Illumina [17945511] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	4E-8		0.2322	[0.15-0.31] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated & secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	1E-8		0.2402	[0.16-0.32] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11973	5E-11		0.2789	[0.2-0.36] unit increase	Illumina [17945467] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11982	1E-13		0.3132	[0.23-0.4] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA- CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	4E-11		0.2796	[0.2-0.36] unit increase	Illumina [17945546] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	2E-9		0.2546	[0.17-0.34] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ CD8+ T cell	2,914 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11973	5E-8		0.2273	[0.15-0.31] unit increase	Illumina [17951421] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	8E-13		0.3027	[0.22-0.39] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167413474	167413475	rs74524218	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs74524218-C	0.11969	3E-19		0.3785	[0.3-0.46] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03222	4E-11		0.5216	[0.37-0.68] unit decrease	Illumina [17954415] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03197	4E-11		0.5267	[0.37-0.68] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03197	1E-10		0.514	[0.36-0.67] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03222	1E-8		0.449	[0.3-0.6] unit decrease	Illumina [17947121] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03221	3E-11		0.5278	[0.37-0.68] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03221	6E-10		0.4889	[0.33-0.64] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167413485	167413486	rs35240301	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs35240301-G	0.03221	2E-13		0.5838	[0.43-0.74] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167417883	167417884	rs2949669	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Terminally Differentiated CD8+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949669-T	0.47312	2E-14		0.2073	[0.15-0.26] unit increase	Illumina [17945853] (imputed)	N
1862	chr1	167417883	167417884	rs2949669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q24.2		rs2949669-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1862	chr1	167418467	167418468	rs34276574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1q24.2		rs34276574-T	NR	3E-8		0.0489	[0.032-0.066] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1862	chr1	167419838	167419839	rs2988279	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2988279-A	0.48432	8E-35		0.3371	[0.28-0.39] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167419838	167419839	rs2988279	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2988279-A	0.4847	2E-18		0.2396	[0.19-0.29] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167420298	167420299	rs2056625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1q24.2		rs2056625-A	NR	7E-16		0.0704	[0.053-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1862	chr1	167420298	167420299	rs2056625	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	1q24.2	CD247	rs2056625-?	NR	8E-11		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1862	chr1	167420298	167420299	rs2056625	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q24.2	CD247	rs2056625-G	NR	5E-21		1.067	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1862	chr1	167420424	167420425	rs2056626	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	1q24.2	CD247	rs2056626-?	0.61	1E-11		1.2345679		Illumina [4723365]	N
1862	chr1	167420424	167420425	rs2056626	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	1q24.2	NR	rs2056626-?	NR	2E-7				Affymetrix [10894596] (imputed)	N
1862	chr1	167420424	167420425	rs2056626	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	1q24.2	CD247	rs2056626-?		6E-6	(EA)			Illumina [~ 2500000] (imputed)	N
1862	chr1	167420424	167420425	rs2056626	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	1q24.2	CD247	rs2056626-?	NR	3E-6	(IcSSc)	1.23	[1.12-1.33]	Illumina [NR] (imputed)	N
1862	chr1	167420424	167420425	rs2056626	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	1q24.2	CD247	rs2056626-T	0.61	1E-6		1.2	[1.12-1.30]	Illumina [489814]	N
1862	chr1	167420424	167420425	rs2056626	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	1q24.2	CD247	rs2056626-?	0.59	3E-9		1.16	[1.11-1.23]	Illumina [279621]	N
1862	chr1	167424923	167424924	rs2949661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	1q24.2		rs2949661-T	NR	7E-12		0.0715	[0.051-0.092] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	4E-119		0.6149	[0.57-0.66] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	7E-122		0.6184	[0.57-0.67] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated & secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	3E-127		0.6324	[0.58-0.68] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44598	6E-154		0.6864	[0.64-0.73] unit increase	Illumina [17945511] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44619	3E-99		0.567	[0.52-0.62] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA- CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44617	1E-84		0.521	[0.47-0.57] unit increase	Illumina [17945546] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	2E-133		0.6441	[0.6-0.69] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	7E-128		0.6285	[0.58-0.68] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	4E-94		0.5477	[0.5-0.6] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	5E-108		0.5797	[0.53-0.63] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2949661-T	0.44649	4E-132		0.644	[0.6-0.69] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	1q24.2	CD247	rs2949661-T	0.401994	8E-11		0.07431537	[0.052-0.097] unit decrease	Affymetrix [7288503] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	1q24.2	CD247	rs2949661-T	0.401258	4E-14		0.06963971	[0.052-0.088] unit decrease	Affymetrix [7288503] (imputed)	N
1862	chr1	167424923	167424924	rs2949661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q24.2		rs2949661-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	1q24.2		rs1214598-?	NR	2E-10		0.94	[0.92-0.96]	Illumina [5170515] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q24.2	CD247	rs1214598-A	0.384793	6E-19		0.020231439	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q24.2	CD247	rs1214598-A	0.384792	7E-15		0.017685123	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.2	NR	rs1214598-A	0.327718	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q24.2	NR	rs1214598-A	0.384099	6E-19		0.018148	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1q24.2	CD247	rs1214598-A	0.374	3E-10		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q24.2	CD247	rs1214598-G	0.62	3E-22				NR [> 9500000] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1q24.2	CD247, POU2F1, CREG1, RCSD1, TRP-CGG1-1, TRP-AGG2-1	rs1214598-G	0.61396	8E-11		1.0430791	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q24.2	NR	rs1214598-G	0.6147	6E-21		1.0594343	[1.05-1.07]	Affymetrix [15688218] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q24.2	CD247	rs1214598-A	0.3853	2E-17				Affymetrix [15688218] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q24.2	NR	rs1214598-G	0.6147	8E-25		1.0596588	[1.05-1.07]	Affymetrix [15688218] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q24.2		rs1214598-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q24.2	CD247	rs1214598-?	NR	5E-11		1.0526316		NR [74888535] (imputed)	N
1862	chr1	167426423	167426424	rs1214598	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	1q24.2	CD247	rs1214598-?	NR	5E-10		1.0638298	[1.04-1.09]	Affymetrix [74888535] (imputed)	N
1862	chr1	167427061	167427062	rs17348881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs17348881-T	0.04106	5E-16		0.5585	[0.42-0.69] unit increase	Illumina [17945511] (imputed)	N
1862	chr1	167427061	167427062	rs17348881	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs17348881-T	0.04128	6E-16		0.557	[0.42-0.69] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167427169	167427170	rs1214596	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1214596-A	0.44609	2E-136		0.6523	[0.6-0.7] unit increase	Illumina [17954415] (imputed)	N
1862	chr1	167427169	167427170	rs1214596	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1214596-A	0.44628	9E-69		0.4631	[0.41-0.51] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167427246	167427247	rs7523907	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q24.2	NR	rs7523907-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1862	chr1	167427246	167427247	rs7523907	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	1q24.2	NR	rs7523907-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1862	chr1	167427246	167427247	rs7523907	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q24.2	CD247, POU2F1	rs7523907-T	0.545745	9E-10		1.039397	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1862	chr1	167427246	167427247	rs7523907	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	1q24.2	CD247	rs7523907-T	0.5408	5E-9		1.1	[1.06-1.13]	Affymetrix [33771858] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00747	2E-9		0.9933	[0.67-1.32] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00748	1E-11		1.13	[0.81-1.45] unit decrease	Illumina [17954415] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.0075	9E-12		1.138	[0.81-1.46] unit decrease	Illumina [17945511] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00749	4E-8		0.9088	[0.58-1.23] unit decrease	Illumina [17945888] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00748	7E-9		0.9574	[0.63-1.28] unit decrease	Illumina [17947121] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00747	1E-11		1.125	[0.8-1.45] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167430239	167430240	rs147045744	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs147045744-T	0.00747	2E-9		0.9916	[0.67-1.32] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167431192	167431193	rs2995089	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1q24.2	CD247	rs2995089-A	0.398550595640169	3E-11		0.04412918	[0.031-0.057] unit decrease	Affymetrix [35186738] (imputed)	N
1862	chr1	167431192	167431193	rs2995089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2995089-A	0.44583	7E-120		0.6185	[0.57-0.67] unit increase	Illumina [17945511] (imputed)	N
1862	chr1	167431192	167431193	rs2995089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2995089-A	0.44604	2E-71		0.4829	[0.43-0.53] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167431192	167431193	rs2995089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA+ CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2995089-A	0.44651	1E-115		0.6021	[0.55-0.65] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167431351	167431352	rs2988277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q24.2		rs2988277-T	NR	2E-8		0.0593	[0.039-0.08] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1862	chr1	167431351	167431352	rs2988277	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2988277-T	0.44626	2E-71		0.4749	[0.42-0.53] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167431351	167431352	rs2988277	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	1q24.2	CD247	rs2988277-C	0.6016	3E-10		1.0750376	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
1862	chr1	167431351	167431352	rs2988277	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q24.2	CD247	rs2988277-C	0.66	4E-14		1.04	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1862	chr1	167432948	167432949	rs1773542	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ CD8+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1773542-C	0.45527	7E-26		0.2805	[0.23-0.33] unit increase	Illumina [18012714] (imputed)	N
1862	chr1	167433055	167433056	rs1723016	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ resting CD4 regulatory T cell	2,649 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723016-C	0.45791	2E-31		0.3265	[0.27-0.38] unit increase	Illumina [17852537] (imputed)	N
1862	chr1	167433055	167433056	rs1723016	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q24.2	CD247	rs1723016-T	0.597219	2E-21		1.0597988	[1.04718057640867-1.07256914786657]	NR [9572556] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q24.2		rs1723018-G	NR	1E-10		0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Terminally Differentiated CD4+ T cell	2,903 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45601	2E-23		0.2737	[0.22-0.33] unit increase	Illumina [17944758] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45566	5E-49		0.3893	[0.34-0.44] unit increase	Illumina [18012714] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45566	1E-61		0.4384	[0.39-0.49] unit increase	Illumina [18012714] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45628	1E-57		0.4235	[0.37-0.47] unit increase	Illumina [17945467] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD8+ T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45692	6E-53		0.4112	[0.36-0.46] unit increase	Illumina [17947121] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ CD8+ T cell	2,914 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45703	8E-39		0.3496	[0.3-0.4] unit increase	Illumina [17951421] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28+ CD45RA- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1723018-G	0.45676	7E-43		0.3668	[0.32-0.42] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	1q24.2	NR	rs1723018-?	NR	8E-6				Affymetrix [10894596] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	1q24.2	NR	rs1723018-?	NR	7E-6				Affymetrix [10894596] (imputed)	N
1862	chr1	167433419	167433420	rs1723018	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	1q24.2	CD247	rs1723018-?	NR	1E-8		1.0582011	[1.04-1.08]	Illumina [13747813] (imputed)	N
1862	chr1	167436269	167436270	rs1617333	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q24.2	CD247	rs1617333-?	NR	3E-22		1.075	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1862	chr1	167436269	167436270	rs1617333	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q24.2	CD247	rs1617333-A	NR	2E-19		1.065	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1862	chr1	167473819	167473820	rs6686571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated & secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs6686571-G	0.12085	3E-10		0.2705	[0.19-0.35] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167473819	167473820	rs6686571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs6686571-G	0.12085	2E-8		0.2402	[0.16-0.32] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167473819	167473820	rs6686571	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs6686571-G	0.12085	4E-9		0.2516	[0.17-0.34] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167475870	167475871	rs1799704	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1799704-C	0.25572	2E-8		0.1761	[0.11-0.24] unit decrease	Illumina [17945888] (imputed)	N
1862	chr1	167476445	167476446	rs1773544	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1773544-G	0.39892	1E-10		0.1801	[0.13-0.23] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167476445	167476446	rs1773544	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated & secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1773544-G	0.39892	3E-8		0.1542	[0.1-0.209] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167479645	167479646	rs79832845	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs79832845-T	0.05808	2E-9		0.3585	[0.24-0.47] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167479645	167479646	rs79832845	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs79832845-T	0.05753	4E-8		0.3171	[0.2-0.43] unit increase	Illumina [18012714] (imputed)	N
1862	chr1	167479645	167479646	rs79832845	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs79832845-T	0.05822	4E-9		0.3498	[0.23-0.47] unit increase	Illumina [17945888] (imputed)	N
1862	chr1	167482044	167482045	rs858551	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ secreting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs858551-G	0.26015	2E-10		0.1953	[0.14-0.26] unit decrease	Illumina [17954450] (imputed)	N
1862	chr1	167485374	167485375	rs1723012	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	1q24.2	NR	rs1723012-?	NR	3E-8				Affymetrix, Illumina [6210527] (imputed)	N
1862	chr1	167485374	167485375	rs1723012	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs1723012-T	0.5409	2E-10		0.1027	[0.071-0.134] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1862	chr1	167499289	167499290	rs10918708	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs10918708-A	0.06428	2E-10		0.3622	[0.25-0.47] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167499289	167499290	rs10918708	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs10918708-A	0.06428	1E-10		0.3656	[0.26-0.48] unit increase	Illumina [17954450] (imputed)	N
1862	chr1	167503916	167503917	rs12038219	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to phenytoin in focal epilepsy	71 European ancestry cases, 218 European ancestry controls	NA			rs12038219-?	NR	6E-8				Illumina [NR] (imputed)	N
1863	chr1	167515271	167515272	rs7513428	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	CREG1	rs7513428-C	0.836	1E-20	(Protein CREG1, CREG1.9357.4.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1863	chr1	167515796	167515797	rs7516079	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREG1	5,362 Icelandic ancestry individuals	NA	1q24.2		rs7516079-T	0.3282	2E-33		0.241486	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1863	chr1	167515796	167515797	rs7516079	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	CREG1	rs7516079-C	0.66515625	5E-28	(CREG1, 9357_4_3)	0.28571793	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1863	chr1	167599532	167599533	rs3738220	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q24.2		rs3738220-T	0.12	2E-11		6.68	z score increase	Affymetrix [9061022] (imputed)	N
1863	chr1	167599532	167599533	rs3738220	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q24.2	NR	rs3738220-T	0.153	3E-8				NR [9056863] (imputed)	N
1863	chr1	167600841	167600842	rs11579633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q24.2	RCSD1	rs11579633-T	0.423276	1E-18		0.01976354	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1863	chr1	167600841	167600842	rs11579633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q24.2	RCSD1	rs11579633-T	0.423287	5E-17		0.018874157	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1863	chr1	167600841	167600842	rs11579633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q24.2	NR	rs11579633-T	0.421903	8E-18		0.01621	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1863	chr1	167600841	167600842	rs11579633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q24.2	NR	rs11579633-T	0.422291	9E-16		0.015807	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1863	chr1	167600841	167600842	rs11579633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q24.2		rs11579633-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1864	chr1	167718498	167718499	rs4145462	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	1q24.2	MPZL1	rs4145462-T	0.05	1E-6				Affymetrix [614963]	N
1864	chr1	167731460	167731461	rs77928077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q24.2	MPZL1	rs77928077-G	0.896	5E-6	(AA)	0.043	NR unit increase	Illumina [NR] (imputed)	N
1864	chr1	167759280	167759281	rs7605	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs7605-T	0.42	1E-8				NR [NR] (imputed)	N
1864	chr1	167760806	167760807	rs10800323	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs10800323-A	0.31	9E-9				NR [NR] (imputed)	N
1864	chr1	167764467	167764468	rs3830174	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830174-A	0.68	2E-9				NR [NR] (imputed)	N
1864	chr1	167764682	167764683	rs3830175	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830175-T	0.68	2E-9				NR [NR] (imputed)	N
1864	chr1	167764834	167764835	rs3830178	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830178-A	0.68	2E-9				NR [NR] (imputed)	N
1864	chr1	167764871	167764872	rs3830179	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830179-T	0.68	2E-9				NR [NR] (imputed)	N
1864	chr1	167764924	167764925	rs3830180	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830180-A	0.68	3E-9				NR [NR] (imputed)	N
1864	chr1	167764974	167764975	rs3830181	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830181-A	0.68	3E-9				NR [NR] (imputed)	N
1864	chr1	167765159	167765160	rs3830182	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs3830182-C	0.32	2E-9				NR [NR] (imputed)	N
1864	chr1	167765899	167765900	rs10800325	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs10800325-A	0.32	1E-8				NR [NR] (imputed)	N
1864	chr1	167765946	167765947	rs10800326	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs10800326-A	0.68	2E-8				NR [NR] (imputed)	N
1864	chr1	167766424	167766425	rs2863268	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs2863268-T	0.43	2E-8				NR [NR] (imputed)	N
1864	chr1	167766654	167766655	rs2863269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs2863269-T	0.57	1E-8				NR [NR] (imputed)	N
1864	chr1	167766918	167766919	rs7518643	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs7518643-A	0.32	2E-8				NR [NR] (imputed)	N
1864	chr1	167768098	167768099	rs6691821	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs6691821-A	0.68	4E-9				NR [NR] (imputed)	N
1864	chr1	167768550	167768551	rs6670189	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs6670189-A	0.32	4E-9				NR [NR] (imputed)	N
1864	chr1	167769249	167769250	rs6695245	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs6695245-T	0.67	1E-8				NR [NR] (imputed)	N
1865	chr1	167903078	167903079	rs10489202	22037555	Shi Y	2011-10-30	Nat Genet	Common variants on 8p12 and 1q24.2 confer risk of schizophrenia.	Schizophrenia	3,750 Han Chinese ancestry cases, 6,468 Han Chinese ancestry controls	4,383 Han Chinese ancestry cases, 4,539 Han Chinese ancestry controls		BRP44, DCAF6	rs10489202-A	0.141	1E-8		1.23	[1.15-1.32]	Affymetrix [546561]	N
1866	chr1	167988550	167988551	rs112979588	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs112979588-T	0.99	6E-17				NR [NR] (imputed)	N
1866	chr1	167988550	167988551	rs112979588	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs112979588-T	0.99	8E-6		0.42	[0.17-0.67] unit decrease	NR [NR] (imputed)	N
1866	chr1	167988550	167988551	rs112979588	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs112979588-T	0.99	9E-10				NR [NR] (imputed)	N
1866	chr1	167988550	167988551	rs112979588	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	1q24.2		rs112979588-T	0.99	2E-11				NR [NR] (imputed)	N
1866	chr1	168019304	168019304	rs5778564	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q24.2	NR	rs5778564-GA	0.41819300000000004	1E-11		0.00543322	[0.0038-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1866	chr1	168019304	168019304	rs5778564	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q24.2	NR	rs5778564-GA	0.41819300000000004	3E-10		0.00571711	[0.0038-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1866	chr1	168028673	168028674	rs11803859	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1q24.2	DCAF6	rs11803859-G	0.927	7E-6	(EA)	0.178	[0.1-0.256] unit increase	Illumina [NR] (imputed)	N
1867	chr1	168041231	168041232	rs10489206	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q24.2	NR	rs10489206-C	0.779271	4E-8		0.00793774	[0.005-0.0108] unit increase	Affymetrix [16585854] (imputed)	N
1867	chr1	168041231	168041232	rs10489206	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q24.2	NR	rs10489206-C	0.779271	4E-7		0.00856665	[0.0052-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
1867	chr1	168075099	168075100	rs138885728	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	1q24.2	NR	rs138885728-?	NR	7E-6		0.28	[0.16-0.4] unit decrease	Illumina [at least 560000] (imputed)	N
1867	chr1	168096677	168096678	rs60504827	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q24.2	NR	rs60504827-T	0.1245	2E-7	(EA)	0.053	[0.033-0.073] unit decrease	Illumina [~ 11800000] (imputed)	N
1867	chr1	168103615	168103616	rs78320035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q24.2	GPR161	rs78320035-C	0.0441	3E-15		0.06793997	[0.051-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1867	chr1	168104560	168104561	rs34914771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q24.2		rs34914771-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1867	chr1	168113709	168113710	rs78343926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q24.2	NR	rs78343926-T	NR	2E-10		0.0378	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1867	chr1	168115363	168115364	rs185690892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.2	NR	rs185690892-A	0.0430768	1E-27				Affymetrix, Illumina [22063850] (imputed)	N
1867	chr1	168115363	168115364	rs185690892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q24.2	NR	rs185690892-A	0.044262	8E-31		0.054153	[0.045-0.063] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1867	chr1	168115363	168115364	rs185690892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.2	NR	rs185690892-A	0.0437599	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
1867	chr1	168115363	168115364	rs185690892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q24.2	NR	rs185690892-A	0.044277	1E-12		0.032386	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1867	chr1	168125912	168125913	rs74415683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q24.2		rs74415683-?	NR	4E-22				NR [~ 8900000] (imputed)	N
1867	chr1	168129193	168129194	rs78267760	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q24.2	NR	rs78267760-C	0.02265	1E-8	(FNTA)	0.02229	NR unit increase	Illumina [1671387] (imputed)	N
1867	chr1	168140611	168140612	rs116431876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q24.2		rs116431876-T	NR	8E-9		0.0323	[0.021-0.043] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1867	chr1	168144035	168144036	rs150304133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q24.2	TIPRL	rs150304133-A	0.044288	6E-21		0.050427344	[0.04-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1868	chr1	168172264	168172265	rs10157191	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs10157191-T	0.8137	3E-23		0.1462	[0.12-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1868	chr1	168179455	168179456	rs59863955	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q24.2	NR	rs59863955-G	0.01045	1E-9	(FNTA)	0.0328	NR unit increase	Illumina [1671387] (imputed)	N
1868	chr1	168201885	168201886	rs116593898	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	1q24.2	SFT2D2	rs116593898-?	NR	3E-6		3.0120482		Affymetrix, Illumina [2928658] (imputed)	N
1868	chr1	168234644	168234645	rs12564492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q24.2	NR	rs12564492-A	0.70324	4E-11		0.0195027	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1868	chr1	168234644	168234645	rs12564492	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1q24.2	NR	rs12564492-A	0.703211	5E-9		0.0153482	[0.0099-0.0208] unit increase	Affymetrix [16585745] (imputed)	N
1869	chr1	168342846	168342847	rs72701786	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1q24.2	NR	rs72701786-G		8E-6		0.1215	[0.068-0.175] SD units increase	NR [10700000] (imputed)	N
1869	chr1	168352933	168352934	rs6700122	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	1q24.2	intergenic	rs6700122-T	0.06	1E-6		1.77	[1.41-2.24]	Illumina [~ 5000000] (imputed)	N
1869	chr1	168359029	168359030	rs2900727	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs2900727-A	0.1692	2E-14		0.1668	[0.12-0.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1869	chr1	168374599	168374600	rs145189127	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		1q24.2	NR	rs145189127-G	0.0228545	7E-6		1.117	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1870	chr1	168442145	168442146	rs189081221	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1q24.2	LOC101928565	rs189081221-G	0.002	7E-6		2.53299	NR	Affymetrix, Illumina [30341632] (imputed)	N
1870	chr1	168449283	168449284	rs143700307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	1q24.2		rs143700307-A	NR	3E-8		0.4922	[0.32-0.67] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
1870	chr1	168475009	168475010	rs72637224	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1q24.2	XCL2	rs72637224-T	NR	3E-7	(Perc15, All)	3.6	[1.25-5.95] unit increase	Illumina [7600000] (imputed)	N
1870	chr1	168494993	168494994	rs75565482	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1q24.2	XCL2	rs75565482-A	NR	1E-6	(Perc15, Cases)	5.1	[1.96-8.24] unit increase	Illumina [7600000] (imputed)	N
1870	chr1	168497740	168497741	rs78663305	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1q24.2	NR	rs78663305-G	0.12	2E-7		0.89	[0.85-0.93]	Illumina [8468885] (imputed)	N
1870	chr1	168497740	168497741	rs78663305	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1q24.2	LOC101928565, XCL2	rs78663305-A	0.882049259	3E-6		1.1496092	[1.08-1.22]	Illumina [10439017] (imputed)	N
1870	chr1	168503385	168503386	rs4656599	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	XCL1	rs4656599-T	0.19	2E-43	(Lymphotactin, XCL1.14078.69.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
1870	chr1	168505016	168505017	rs77045810	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	1q24.2	LOC101928565, XCL2	rs77045810-A	0.883228742	2E-7		1.1030006	[1.06-1.14]	Illumina [10439017] (imputed)	N
1870	chr1	168507462	168507463	rs12046909	34927100	Stuart PE	2021-11-06	HGG Adv	Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.	Psoriasis	15,967 European ancestry cases, 28,194 European ancestry controls, 2,590 South Asian ancestry cases, 1,720 South Asian ancestry controls	NA	1q24.2	XCL1	rs12046909-C		2E-9		1.14	[1.09-1.19]	Affymetrix, Illumina, Perlegen [8942692] (imputed)	N
1870	chr1	168507462	168507463	rs12046909	34927100	Stuart PE	2021-11-06	HGG Adv	Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide.	Psoriasis	15,967 European ancestry cases, 28,194 European ancestry controls	NA	1q24.2	XCL1	rs12046909-C		6E-7		1.13	[1.08-1.18]	Affymetrix, Illumina, Perlegen [9010555] (imputed)	N
1870	chr1	168511154	168511155	rs76400946	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	XCL1	rs76400946-C	0.506875	2E-6	(XCL1, 14078_69_3)	0.11749761	[0.069-0.166] unit increase	Illumina [> 1000000] (imputed)	N
1870	chr1	168521416	168521417	rs1933112	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	NR	rs1933112-?	NR	6E-7	(EA, Lymphotactin)			Affymetrix [509946]	N
1870	chr1	168539376	168539377	rs76462307	31904872	Chou WC	2020-01-06	Int J Cancer	A Functional Variant Near XCL1 Gene Improves Breast Cancer Survival via Promoting Cancer Immunity.	Survival in breast cancer (estrogen-receptor positive)	953 Taiwanese individuals	NA	1q24.2	MCF-7,T47D	rs76462307-?		1E-6				Affymetrix [632566] (imputed)	N
1870	chr1	168542040	168542041	rs16860928	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q24.2	NR	rs16860928-?	NR	1E-11				Affymetrix [NR]	N
1871	chr1	168572719	168572720	rs72705895	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs72705895-?	NR	9E-10		0.1149	[0.078-0.152] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	8E-9	(176 ms)	0.0315459	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	8E-9	(140 ms)	0.0316507	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	6E-9	(178 ms)	0.0317281	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	4E-9	(138 ms)	0.0319542	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	4E-8	(182 ms)	0.0303301	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	4E-8	(174 ms)	0.0307848	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	4E-8	(154 ms)	0.0306083	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	3E-8	(170 ms)	0.0302663	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	3E-8	(158 ms)	0.0312262	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	2E-9	(160 ms)	0.0333222	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	2E-8	(168 ms)	0.0308232	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	2E-8	(152 ms)	0.0308755	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168599215	168599216	rs11580561	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	XCL1	rs11580561-C	0.619355	1E-8	(180 ms)	0.0314813	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1871	chr1	168618640	168618641	rs1412337	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	1q24.2	DPT	rs1412337-?	NR	2E-9				Affymetrix [70897]	N
1871	chr1	168632982	168632983	rs7518687	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	1q24.2	intergenic	rs7518687-A	NR	1E-10		1.19	[NR]	NR [352000]	N
1871	chr1	168663273	168663274	rs17502733	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	1q24.2		rs17502733-C	0.948	7E-6		0.1	[0.057-0.143] unit decrease	Affymetrix [6030650] (imputed)	N
1871	chr1	168675970	168675971	rs530022	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	DPT	rs530022-A	0.4026104	5E-11	(EA, Dermatopontin)	0.2652	[0.19-0.34] unit decrease	Affymetrix [509946]	N
1871	chr1	168685804	168685805	rs533619	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	1q24.2		rs533619-C	0.73	1E-16		0.054	[0.042-0.066] unit decrease	Affymetrix [NR]	N
1871	chr1	168685804	168685805	rs533619	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	1q24.2		rs533619-C	0.73	4E-16		0.054	[0.04-0.068] unit decrease	Affymetrix [NR]	N
1871	chr1	168687511	168687512	rs607484	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	1q24.2	DPTy	rs607484-T	0.733	3E-8		0.032	[0.02-0.044] unit increase	Affymetrix [~ 9000000] (imputed)	N
1871	chr1	168688579	168688580	rs512129	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q24.2	DPT	rs512129-?	NR	2E-10				Affymetrix, Illumina [22000000] (imputed)	N
1872	chr1	168689939	168689940	rs545833	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q24.2	ATP1B1	rs545833-T	0.266	4E-17		0.9	[0.68-1.12] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1872	chr1	168692136	168692137	rs531706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	DPT	rs531706-C	0.717493	8E-67	(164 ms)	0.104034	[0.092-0.116] unit increase	Affymetrix [10000000] (imputed)	N
1872	chr1	168692136	168692137	rs531706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	DPT	rs531706-C	0.717493	5E-68	(172 ms)	0.105358	[0.093-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1872	chr1	168692136	168692137	rs531706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	DPT	rs531706-C	0.717493	5E-68	(168 ms)	0.105244	[0.093-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1872	chr1	168692136	168692137	rs531706	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q24.2	DPT	rs531706-C	0.72	3E-8		0.39	[0.25-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1872	chr1	168692136	168692137	rs531706	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q24.2	DPT	rs531706-C	0.7323	2E-7		0.3841	[0.24-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1872	chr1	168694211	168694212	rs2207216	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.2	XCL1	rs2207216-?	NR	1E-6	(CE 20:3)	0.17222978	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1872	chr1	168697760	168697761	rs1018454	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPT	5,361 Icelandic ancestry individuals	NA	1q24.2		rs1018454-A	0.452	3E-63		0.291331	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
1872	chr1	168697760	168697761	rs1018454	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	DPT	rs1018454-A	0.45203125	7E-34	(DPT, 4979_34_2)	0.2869795	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1872	chr1	168697760	168697761	rs1018454	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	DPT	rs1018454-C	0.586	8E-67	(Dermatopontin, DPT.4979.34.2)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1872	chr1	168705288	168705289	rs1765516	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q24.2	NR	rs1765516-A	0.5425	5E-7		0.0059	[0.0035-0.0083] unit decrease	NR [7666894] (imputed)	N
1872	chr1	168707756	168707757	rs494189	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	DPT, AL049798.1, RP1-10C16.1	rs494189-A	0.2467402	1E-14	(Dermatopontin)	0.3546	[0.27-0.44] unit decrease	Affymetrix [509946]	N
1872	chr1	168711027	168711028	rs115063924	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs115063924-?	NR	1E-46		0.6432	[0.56-0.73] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1872	chr1	168720620	168720621	rs7534485	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1q24.2	DPT, LOC391132	rs7534485-G	0.464	8E-6		2.2	[1.55-3.13]	Illumina [1556551]	N
1872	chr1	168735998	168735999	rs140326681	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs140326681-A	0.026	5E-29	(Dermatopontin, DPT.4979.34.2)	0.88	[0.72-1.04] unit decrease	Affymetrix [10572788] (imputed)	N
1872	chr1	168740525	168740526	rs115095598	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPT	5,361 Icelandic ancestry individuals	NA	1q24.2		rs115095598-A	0.02219	2E-42		0.787224	[0.67-0.9] unit decrease	Illumina [7506463] (imputed)	N
1872	chr1	168754412	168754413	rs548873184	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Creatinine levels	16,347 British ancestry from 6863 families.	NA	1q24.2	LINC00626	rs548873184-A	0.001	1E-8		1.059693	[0.69-1.43] mg/dl increase	Illumina [24111857] (imputed)	N
1873	chr1	168844011	168844012	rs144167489	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1q24.2	Intergenic	rs144167489-T	0.017	2E-6	(liability model)	0.32	[0.18-0.46] unit decrease	NR [19725427] (imputed)	N
1873	chr1	168874352	168874353	rs6670083	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q24.2	NR	rs6670083-?	NR	5E-8				Illumina [7760689] (imputed)	N
1873	chr1	168889372	168889373	rs78516619	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs78516619-?	NR	2E-57		0.6461	[0.57-0.73] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1873	chr1	168908720	168908721	rs10919022	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	1q24.2	NR	rs10919022-?	NR	7E-6		0.023967	[0.013-0.034] unit increase	Affymetrix [9658292] (imputed)	N
1873	chr1	168937071	168937072	rs113123846	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q24.2	intergenic	rs113123846-G	0.01100000000000001	4E-6		1.2811971		NR [9372253] (imputed)	N
1873	chr1	168942828	168942829	rs10800398	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	1q24.2	ATP1B1	rs10800398-?	NR	8E-6	(Males)		[NR]	Illumina [283437]	N
1874	chr1	169002380	169002381	rs5005856	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1q24.2	DPT, ATP1B1	rs5005856-G	NR	6E-6		0.0875024	[0.05-0.125] unit increase	Illumina [at least 950000] (imputed)	N
1874	chr1	169018901	169018902	rs3007364	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1q24.2	NR	rs3007364-G		3E-11		0.11	[0.071-0.149] unit increase	NR [NR]	N
1874	chr1	169028715	169028716	rs2982459	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		LINC00970	rs2982459-G	NR	2E-12		0.97	[0.96-0.98]	Affymetrix [9869154] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	7E-9	(138 ms)	0.0328372	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	3E-8	(170 ms)	0.0314306	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	2E-8	(180 ms)	0.0325355	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	2E-8	(172 ms)	0.0317055	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	2E-8	(162 ms)	0.0307786	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	2E-8	(146 ms)	0.0312865	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	1E-8	(174 ms)	0.0313748	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169041001	169041002	rs12569204	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs12569204-C	0.430296	1E-8	(140 ms)	0.0310054	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1874	chr1	169057968	169057969	rs1200108	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	1q24.2	ATP1B1	rs1200108-A	NR	5E-10		0.163	[0.11-0.21] unit decrease	Affymetrix [7701190] (imputed)	N
1874	chr1	169057968	169057969	rs1200108	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	1q24.2		rs1200108-G	0.350794	1E-24		0.0977333	[0.079-0.116] decrease	Affymetrix [11014269] (imputed)	N
1874	chr1	169059105	169059106	rs1200113	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1q24.2	LINC00970	rs1200113-T	0.425	6E-11		0.097	[0.068-0.126] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1874	chr1	169059770	169059771	rs749955620	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q24.2	LINC00970	rs749955620-T	0.9986	3E-6		0.7057	[0.41-1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1874	chr1	169059770	169059771	rs749955620	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q24.2	LINC00970	rs749955620-T	0.9986	3E-6		0.7057	[0.41-1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1874	chr1	169060488	169060489	rs1200114	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	1q24.2	LINC00970, ATP1B1	rs1200114-?	NR	1E-18		1.45	[1.34-1.58]	Illumina [8680745] (imputed)	N
1874	chr1	169070449	169070450	rs12061601	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs12061601-?	NR	2E-12		2.133805	[1.54-2.73] unit decrease	Illumina [26659972] (imputed)	N
1874	chr1	169070449	169070450	rs12061601	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q24.2	ATP1B1	rs12061601-C	0.117	3E-21		1.41	[1.12-1.7] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1874	chr1	169073001	169073002	rs12079856	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q24.2	ATP1B1	rs12079856-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1874	chr1	169073345	169073346	rs1320976	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs1320976-?	NR	2E-14		2.106491	[1.57-2.65] unit decrease	Illumina [26659972] (imputed)	N
1874	chr1	169073345	169073346	rs1320976	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	1q24.2	ATP1B1	rs1320976-A	0.25	2E-10		2.06	[1.43-2.69] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1874	chr1	169073387	169073388	rs1320977	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q24.2	ATP1B1	rs1320977-A	0.15	3E-15		2.3	[1.73-2.87] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1874	chr1	169076211	169076212	rs1200128	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs1200128-C	NR	2E-8		1.0429		Affymetrix [9869154] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	8E-14	(160 ms)	0.0492222	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	6E-12	(140 ms)	0.0467133	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	6E-10	(124 ms)	0.0429721	[0.03-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	5E-15	(180 ms)	0.0511424	[0.038-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	5E-13	(148 ms)	0.0490382	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	5E-12	(220 ms)	0.0454779	[0.032-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	4E-14	(172 ms)	0.0503816	[0.037-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	4E-13	(146 ms)	0.048967	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	4E-12	(152 ms)	0.0467416	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	4E-11	(138 ms)	0.0445741	[0.031-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	3E-8	(122 ms)	0.0388617	[0.026-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	3E-12	(164 ms)	0.0465719	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	2E-16	(168 ms)	0.0551396	[0.042-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	2E-15	(170 ms)	0.0532171	[0.04-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	2E-14	(182 ms)	0.0506835	[0.037-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	2E-13	(142 ms)	0.0490651	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	2E-12	(162 ms)	0.0466435	[0.033-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	1E-9	(132 ms)	0.0416941	[0.028-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1874	chr1	169078571	169078572	rs1200130	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	ATP1B1	rs1200130-C	0.776169	1E-14	(166 ms)	0.0518105	[0.039-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1875	chr1	169090659	169090660	rs12731646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q24.2		rs12731646-T	NR	1E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1875	chr1	169090659	169090660	rs12731646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q24.2		rs12731646-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1875	chr1	169090659	169090660	rs12731646	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q24.2	chr1mb169	rs12731646-T	0.407624466	3E-6		0.149	[0.087-0.211] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1875	chr1	169090747	169090748	rs145163454	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	1q24.2	ATP1B1	rs145163454-T	0.0252	6E-28		0.87	[0.85-0.89]	Affymetrix, Illumina [8494288] (imputed)	N
1875	chr1	169090747	169090748	rs145163454	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs145163454-?	NR	6E-146		0.8284	[0.77-0.89] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1875	chr1	169094458	169094459	rs1892094	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q24.2	ATP1B1, NME7	rs1892094-T	0.4956	3E-12		0.0362	[0.026-0.046] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1875	chr1	169094458	169094459	rs1892094	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q24.2	ATP1B1, NME7	rs1892094-T	0.4924	4E-13		0.0413	[0.03-0.052] unit decrease	NR [8041861] (imputed)	N
1875	chr1	169096117	169096118	rs12028817	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q24.2	ATP1B1	rs12028817-?	NR	5E-9		0.0313432	[0.021-0.042] unit decrease	Illumina [4804024] (imputed)	N
1875	chr1	169099036	169099037	rs10919070	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs10919070-?	NR	5E-17		2.408625	[1.85-2.97] unit decrease	Illumina [26659972] (imputed)	N
1875	chr1	169099036	169099037	rs10919070	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q24.2	ATP1B1	rs10919070-C	0.126	1E-31		1.68	[1.41-1.95] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1875	chr1	169099136	169099137	rs75112989	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	1q24.2		rs75112989-?	NR	3E-33				Affymetrix [254068]	N
1875	chr1	169099482	169099483	rs10919071	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs10919071-?	NR	7E-17		2.394475	[1.83-2.96] unit decrease	Illumina [26659972] (imputed)	N
1875	chr1	169099482	169099483	rs10919071	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	1q24.2	ATP1B1	rs10919071-A	0.87	1E-15		2.05	[1.48-2.62] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
1875	chr1	169100094	169100095	rs11809180	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs11809180-?	NR	2E-10		1.930744	[1.33-2.53] unit decrease	Illumina [26659972] (imputed)	N
1875	chr1	169100094	169100095	rs11809180	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	1q24.2	ATP1B1	rs11809180-G	0.335	1E-6	(QT)			Illumina [~ 2500000]	N
1875	chr1	169101059	169101060	rs12079745	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs12079745-?	NR	2E-9		1.956966	[1.32-2.59] unit decrease	Illumina [26659972] (imputed)	N
1875	chr1	169101059	169101060	rs12079745	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q24.2	ATP1B1	rs12079745-A	0.059	1E-10		1.34	[0.93-1.75] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1875	chr1	169101934	169101935	rs1138486	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q24.2	ATP1B1	rs1138486-T	0.14	7E-15		2.46	[1.85-3.07] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1875	chr1	169102339	169102340	rs12035622	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	1q24.2	NME7	rs12035622-A	0.117	6E-16		2.287	[1.73-2.84] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1875	chr1	169102339	169102340	rs12035622	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q24.2	ATP1B1	rs12035622-A	0.19	9E-18		2.36	[1.83-2.89] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1875	chr1	169109392	169109393	rs2179490	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q24.2	NME7	rs2179490-A	0.3692	2E-11		0.2307	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1875	chr1	169112398	169112399	rs10081960	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	1q24.2	NME7	rs10081960-C	0.601	3E-9		0.9766395	[NR]	Illumina [12493444] (imputed)	N
1875	chr1	169113880	169113881	rs4656180	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q24.2	NME7	rs4656180-A	0.3154	4E-17		0.2267	[0.17-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1875	chr1	169135126	169135127	rs16861990	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	1q24.2	NME7	rs16861990-C	NR	2E-17		2.763	[2.185-3.495]	Illumina [484621]	N
1875	chr1	169135126	169135127	rs16861990	30659681	Lindstrom S	2019-01-19	Genet Epidemiol	A large-scale exome array analysis of venous thromboembolism.	Venous thromboembolism	8,332 European ancestry cases, 16,087 European ancestry controls, 382 African-American cases, 1,476 African-American controls	NA	1q24.2	NME7	rs16861990-?	0.073	3E-37		1.69	[1.56-1.83]	Illumina [64794]	N
1875	chr1	169135126	169135127	rs16861990	22672568	Heit JA	2012-06-05	J Thromb Haemost	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 cases, 1,418 controls	1q24.2	NME7	rs16861990-C	0.099	2E-12		2.02	[1.66-2.45]	Illumina [~ 2500000] (imputed)	N
1875	chr1	169135126	169135127	rs16861990	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1q24.2	NME7	rs16861990-C	0.061	2E-6		0.0614	[NR] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1875	chr1	169152587	169152588	rs12753816	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q24.2	NME7	rs12753816-T	0.323	4E-7		0.036	[0.022-0.05] unit decrease	Affymetrix [7947838] (imputed)	N
1875	chr1	169180301	169180302	rs3766077	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	1q24.2		rs3766077-A	0.588991	4E-8		0.0230875	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1875	chr1	169207360	169207361	rs7519279	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q24.2	NME7	rs7519279-G		5E-6		0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
1875	chr1	169207360	169207361	rs7519279	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q24.2	NME7	rs7519279-G		2E-7		0.222	unit increase	Affymetrix [at least 2696785] (imputed)	N
1875	chr1	169207360	169207361	rs7519279	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q24.2	NME7	rs7519279-G		1E-6	(EA)	0.215	unit increase	Affymetrix [at least 2696785] (imputed)	N
1875	chr1	169207360	169207361	rs7519279	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q24.2	NME7	rs7519279-G		1E-13		0.21	unit increase	Affymetrix [at least 2696785] (imputed)	N
1876	chr1	169216411	169216412	rs2040445	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs2040445-?	NR	4E-168		0.805	[0.75-0.86] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	9E-9	(182 ms)	0.106794	[0.07-0.143] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	9E-9	(180 ms)	0.10844	[0.072-0.145] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	7E-9	(184 ms)	0.106637	[0.07-0.143] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	5E-9	(168 ms)	0.105991	[0.07-0.142] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	5E-10	(170 ms)	0.113094	[0.077-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	3E-9	(172 ms)	0.108342	[0.072-0.145] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	3E-8	(164 ms)	0.101739	[0.065-0.138] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169231991	169231992	rs67779898	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs67779898-G	0.970192	2E-8	(166 ms)	0.101097	[0.065-0.138] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271316	169271317	rs60486111	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1q24.2	NME7	rs60486111-A	0.667302	8E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1876	chr1	169271596	169271597	rs148734148	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1q24.2		rs148734148-A	NR	9E-6		1.26947		Affymetrix, Illumina [62056310] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	9E-25	(180 ms)	0.0783955	[0.063-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	9E-22	(160 ms)	0.0729823	[0.058-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	7E-19	(142 ms)	0.0674719	[0.052-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	7E-17	(122 ms)	0.0643534	[0.049-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	6E-24	(174 ms)	0.0761541	[0.061-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	6E-24	(170 ms)	0.077121	[0.062-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	6E-18	(152 ms)	0.0657224	[0.05-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	5E-17	(124 ms)	0.0632879	[0.048-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	4E-16	(132 ms)	0.0617331	[0.046-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	3E-18	(138 ms)	0.0651147	[0.05-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	3E-12	(118 ms)	0.0529312	[0.038-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-26	(184 ms)	0.0814163	[0.066-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-26	(182 ms)	0.0812695	[0.066-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-23	(168 ms)	0.0762433	[0.061-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-22	(166 ms)	0.0744253	[0.059-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-20	(162 ms)	0.0705258	[0.055-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-19	(148 ms)	0.0684145	[0.053-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	2E-19	(146 ms)	0.0681612	[0.053-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	1E-24	(172 ms)	0.0782325	[0.063-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	1E-20	(164 ms)	0.0710435	[0.056-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	NME7	rs1591734-C	0.859606	1E-19	(140 ms)	0.06907	[0.054-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	1q24.2	ATP1B1	rs1591734-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1q24.2		rs1591734-C	0.86	4E-20		0.069	[0.053-0.085] bpm increase	Affymetrix [9800000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1q24.2		rs1591734-C	0.859891	6E-12	(female)	0.0737943	[0.053-0.095] bpm increase	Affymetrix [9800000] (imputed)	N
1876	chr1	169271901	169271902	rs1591734	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	1q24.2		rs1591734-C	0.859891	6E-10	(male)	0.0730584	[0.050-0.096] bpm increase	Affymetrix [9800000] (imputed)	N
1876	chr1	169311863	169311864	rs186721095	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	1q24.2	NR	rs186721095-?	NR	9E-6		0.0739	[0.041-0.106] unit increase	Illumina [at least 560000] (imputed)	N
1876	chr1	169324792	169324793	rs1209731	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs1209731-?	NR	2E-164		0.8243	[0.77-0.88] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1877	chr1	169361643	169361644	rs137902590	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	NR	rs137902590-A	0.9859375	3E-10	(EHBP1, 12813_18_3)	0.6691258	[0.46-0.88] unit increase	Illumina [> 1000000] (imputed)	N
1877	chr1	169361643	169361644	rs137902590	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	NR	rs137902590-A	0.9859375	2E-20	(F5, 4906_35_1)	0.9841237	[0.78-1.19] unit increase	Illumina [> 1000000] (imputed)	N
1877	chr1	169361643	169361644	rs137902590	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	NR	rs137902590-A	0.9859375	2E-13	(GUCA1A, 10008_43_3)	0.7727602	[0.57-0.98] unit increase	Illumina [> 1000000] (imputed)	N
1877	chr1	169428943	169428944	rs1208134	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	1q24.2		rs1208134-?	NR	2E-31				Affymetrix [254068]	N
1877	chr1	169446182	169446183	rs1983546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	1q24.2	NR	rs1983546-?	NR	2E-9		1.292427	[0.87-1.72] unit decrease	Illumina [26659972] (imputed)	N
1877	chr1	169446182	169446183	rs1983546	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q24.2	ATP1B1	rs1983546-G	0.348	1E-15		0.81	[0.61-1.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1877	chr1	169467653	169467654	rs1894692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VDR	5,322 Icelandic ancestry individuals	NA	1q24.2		rs1894692-G	0.01839	5E-13		0.430322	[0.31-0.55] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169467653	169467654	rs1894692	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	1q24.2		rs1894692-A	NR	3E-7		0.034	[0.02-0.048] unit decrease	NR [7831927]	N
1877	chr1	169469141	169469142	rs12127364	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	1q24.2	NR	rs12127364-?	NR	4E-7		0.03676	[0.023-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1877	chr1	169472303	169472304	rs146305599	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPACA7	5,364 Icelandic ancestry individuals	NA	1q24.2		rs146305599-G	0.03023	6E-11		0.361073	[0.25-0.47] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169473502	169473503	rs10919178	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1q24.2	NR	rs10919178-C		9E-6		0.1313	[0.074-0.189] SD units increase	NR [10700000] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPMT	5,341 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	3E-33		0.402139	[0.34-0.47] unit increase	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TOR1AIP1	5,360 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	9E-11		0.250913	[0.18-0.33] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM230	5,341 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	9E-20		0.334561	[0.26-0.41] unit increase	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFPI	5,363 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	6E-23		0.371875	[0.3-0.45] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	2E-13		0.266902	[0.2-0.34] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPACA7	5,364 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	2E-35		0.473156	[0.4-0.55] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIT3	5,364 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	3E-8		0.215651	[0.14-0.29] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA0040	5,356 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	6E-17		0.312085	[0.24-0.39] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GUCA1A	5,363 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	1E-61		0.631847	[0.56-0.71] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F5	5,357 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	2E-118		0.857182	[0.78-0.93] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EHBP1	5,360 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	1E-58		0.613871	[0.54-0.69] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHGA	5,367 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	4E-12		0.270479	[0.19-0.35] unit increase	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	1E-17		0.321251	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	4E-17		0.320719	[0.25-0.4] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP7	5,357 Icelandic ancestry individuals	NA	1q24.2		rs61808983-T	0.0633	5E-45		0.523887	[0.45-0.6] unit decrease	Illumina [7506463] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	1q24.2	F5	rs61808983-?	NR	3E-6				Illumina [11329225] (imputed)	N
1877	chr1	169474396	169474397	rs61808983	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs61808983-T	0.059	7E-18	(EH domain-binding protein 1, EHBP1.12813.18.3)	0.48	[0.36-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169476325	169476326	rs4656185	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	1q24.2	F5	rs4656185-G		1E-15		0.205	[0.15-0.26] SD units decrease	NR [10700000] (imputed)	N
1878	chr1	169477573	169477574	rs6687813	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	1q24.2		rs6687813-?	NR	7E-51				Affymetrix [254068]	N
1878	chr1	169477573	169477574	rs6687813	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	1q24.2	F5	rs78314670-?	0.065	1E-6				Illumina [308166]	N
1878	chr1	169477573	169477574	rs6687813	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	1q24.2	F5	rs6687813-A	0.06	2E-14		10.1	[2.7-17.9] % increase	Affymetrix, Illumina [2522393] (imputed)	N
1878	chr1	169478104	169478105	rs72708008	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis	510 European ancestry individuals	1,156 European ancestry individuals	1q24.2	SLC19A2, F5	rs72708008-?	NR	8E-12		0.171	[0.12-0.22] unit decrease	NR [6264382] (imputed)	N
1878	chr1	169481222	169481223	rs6427196	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	1q24.2	F5	rs6427196-C	0.93	4E-51		2.07	[1.89-2.28]	Affymetrix, Illumina [2543885] (imputed)	N
1878	chr1	169481730	169481731	rs72708013	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	1q24.2		rs72708013-G	0.02944	3E-13		0.385411	[0.28-0.49] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169481730	169481731	rs72708013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs72708013-G	0.055	5E-30	(Cadherin-7, CDH7.7959.34.3)	0.61	[0.51-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169481730	169481731	rs72708013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs72708013-G	0.055	3E-22	(Torsin-1A-interacting protein 1, TOR1AIP1.9039.47.3)	0.52	[0.42-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169481730	169481731	rs72708013	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs72708013-G	0.055	1E-25	(T-cell surface glycoprotein CD3 epsilon chain, CD3E.8069.85.3)	0.56	[0.46-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169484551	169484552	rs3820060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	1q24.2		rs3820060-G	0.3363	5E-16		0.157507	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169484551	169484552	rs3820060	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	1q24.2	F5	rs3820060-?	NR	6E-20				Illumina [11329225] (imputed)	N
1878	chr1	169484766	169484767	rs9332701	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs9332701-G	0.058	9E-14	(Cadherin-7, CDH7.7959.34.3)	0.42	[0.3-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169484766	169484767	rs9332701	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5	rs9332701-G	0.03799392	1E-23	(EA, Coagulation Factor V)	1.166	[0.94-1.39] unit decrease	Affymetrix [509946]	N
1878	chr1	169486140	169486141	rs966751	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs966751-G	0.055	5E-17	(Solute carrier family 22 member 16, SLC22A16.9969.8.3)	0.45	[0.35-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169487820	169487821	rs6013	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	1q24.2	F5	rs6013-?	NR	2E-87		0.2086	[0.19-0.23] unit increase novel	Illumina [6108953] (imputed)	N
1878	chr1	169487820	169487821	rs6013	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	1q24.2	F5	rs6013-?	NR	4E-39		0.1716	[0.15-0.2] unit increase novel	Illumina [6108953] (imputed)	N
1878	chr1	169489202	169489203	rs9332661	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DTX1	5,356 Icelandic ancestry individuals	NA	1q24.2		rs9332661-G	0.02961	4E-12		0.382921	[0.27-0.49] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169490771	169490772	rs9332653	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5	rs9332653-A	0.1850354	2E-11	(EA, Coagulation Factor V)	0.3882	[0.28-0.5] unit increase	Affymetrix [509946]	N
1878	chr1	169490771	169490772	rs9332653	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5	rs9332653-A	0.1850354	2E-11	(EA, Calcium/calmodulin-dependent protein kinase type 1)	0.3876	[0.28-0.5] unit increase	Affymetrix [509946]	N
1878	chr1	169491554	169491555	rs2420371	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	1q24.2	F5	rs2420371-G	0.18	4E-80	(ACVn ratio)	1.16	[1.04-1.28] unit decrease	Illumina [472123]	N
1878	chr1	169498974	169498975	rs6030	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1q24.2	F5	rs6030-T	0.67	2E-10		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1878	chr1	169498974	169498975	rs6030	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	1q24.2	F5	rs6030-?	NR	3E-6	(Obese)			Illumina [~ 550000]	N
1878	chr1	169499380	169499381	rs2187953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs2187953-C	0.263	2E-96	(Sialic acid-binding Ig-like lectin 11, SIGLEC11.8913.22.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1878	chr1	169502532	169502533	rs6670393	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	1q24.2		rs6670393-C	0.3036	1E-21		0.18867	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169505157	169505158	rs4656687	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIT3	5,364 Icelandic ancestry individuals	NA	1q24.2		rs4656687-C	0.3418	4E-13		0.143896	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169506240	169506241	rs7535409	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8G	5,344 Icelandic ancestry individuals	NA	1q24.2		rs7535409-G	0.3332	5E-55		0.284615	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169507075	169507076	rs10800453	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX2	5,366 Icelandic ancestry individuals	NA	1q24.2		rs10800453-A	0.3037	7E-35		0.249457	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169507075	169507076	rs10800453	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EHBP1	5,360 Icelandic ancestry individuals	NA	1q24.2		rs10800453-A	0.3037	1E-21		0.192313	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169507075	169507076	rs10800453	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs10800453-A	0.262	3E-24	(Tissue factor pathway inhibitor, TFPI.3336.50.1)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1878	chr1	169507843	169507844	rs1557570	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULT1B1	5,361 Icelandic ancestry individuals	NA	1q24.2		rs1557570-T	0.335	3E-30		0.22496	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169507843	169507844	rs1557570	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	1q24.2	NR	rs1557570-G		3E-12		0.1186	[0.085-0.152] SD units decrease	NR [10700000] (imputed)	N
1878	chr1	169510379	169510380	rs9287090	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs9287090-A	0.263	9E-97	(Sialic acid-binding Ig-like lectin 11, SIGLEC11.8913.22.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1878	chr1	169510379	169510380	rs9287090	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs9287090-A	0.263	3E-14	(Neuronal pentraxin-2, NPTX2.6521.35.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1878	chr1	169510523	169510524	rs1800594	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs1800594-G	0.32	2E-12	(Protein SEC13 homolog, SEC13.14689.3.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169510523	169510524	rs1800594	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke	2,567 European ancestry cases, 17,163 European ancestry controls, 381 African American ancestry cases, 352 African American ancestry controls, 678 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	1,003 European ancestry cases, 7,745 European ancestry controls	1q24.2	F5	rs1800594-A	0.69	2E-6	(EA)	1.18	[1.11-1.27]	Illumina [up to 13439215] (imputed)	N
1878	chr1	169511554	169511555	rs6032	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	1q24.2	F5	rs6032-T	0.37	3E-8		2.12	[1.63-2.77]	Illumina [5378539] (imputed)	N
1878	chr1	169511733	169511734	rs4525	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	F5	rs4525-C	0.263	4E-518	(Calcium/calmodulin-dependent protein kinase type 1, CAMK1.3592.4.3)	1.05	[1.01-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169511733	169511734	rs4525	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5	rs4525-C	0.275326	2E-110	(Calcium/calmodulin-dependent protein kinase type 1)	0.9865	[0.91-1.06] unit decrease	Affymetrix [509946]	N
1878	chr1	169511754	169511755	rs4524	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	1q24.2	F5	rs4524-T	NR	3E-29		1.1363636	[1.11-1.16]	Affymetrix, Illumina [12923718] (imputed)	N
1878	chr1	169511754	169511755	rs4524	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	1q24.2	F5	rs4524-T	0.736	3E-11		1.2	[1.14-1.26]	Affymetrix, Illumina [6751884] (imputed)	N
1878	chr1	169512650	169512651	rs6662696	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAE	5,363 Icelandic ancestry individuals	NA	1q24.2		rs6662696-A	0.3032	1E-16		0.17005	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169512979	169512980	rs9332599	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F5	5,357 Icelandic ancestry individuals	NA	1q24.2		rs9332599-A	0.3228	9E-11		0.128942	[0.09-0.168] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169512979	169512980	rs9332599	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	1q24.2	F5	rs9332599-?	NR	7E-12				Illumina [6022229] (imputed)	N
1878	chr1	169514005	169514006	rs1018827	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	1q24.2	F5	rs1018827-A	NR	1E-16		2.57	[2.054-3.216]	Illumina [484621]	N
1878	chr1	169514005	169514006	rs1018827	21980494	Germain M	2011-09-27	PLoS One	Genetics of venous thrombosis: insights from a new genome wide association study.	Venous thromboembolism	1,542 European ancestry cases, 1,110 European ancestry controls	NA	1q24.2	NME7, SLC19A2, F5	rs1018827-A	0.12	2E-26		2.52	[NR]	Illumina [481002]	N
1878	chr1	169514336	169514337	rs9332596	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	1q24.2		rs9332596-G	0.3147	5E-16		0.158545	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169514789	169514790	rs9332591	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs9332591-A	0.111	9E-146	(Calcium/calmodulin-dependent protein kinase type 1, CAMK1.3592.4.3)	1.01	[0.93-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169515182	169515183	rs3766110	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	1q24.2	NR	rs3766110-C	NR	4E-6		0.1287	[0.074-0.183] SD units increase	NR [10700000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	1q24.2		rs6025-T	0.97	7E-13		1.2	[1.15-1.25]	Affymetrix, Illumina [NR] (imputed)	N
1878	chr1	169519048	169519049	rs6025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	1q24.2		rs6025-C	NR	3E-11		0.1479	[0.1-0.19] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1878	chr1	169519048	169519049	rs6025	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Peripheral vascular disease	4,301 European ancestry cases, 52,336 European ancestry controls	NA	1q24.2		rs6025-C	0.9719441	4E-12		0.64		Affymetrix [15468298] (imputed)	N
1878	chr1	169519048	169519049	rs6025	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	1q24.2	F5	rs6025-A	NR	5E-27		5.775	[4.197-7.945]	Illumina [484621]	N
1878	chr1	169519048	169519049	rs6025	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	1q24.2	F5	rs6025-T	0.0279	2E-8		0.093	[0.13-0.061] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	1q24.2	F5	rs6025-T	0.0279	7E-37		0.15	[0.12-0.17] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	D-dimer levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1q24.2	F5	rs6025-T	0.018	4E-11		0.257	[0.18-0.33] unit increase	Affymetrix [up to 12642786] (imputed)	N
1878	chr1	169519048	169519049	rs6025	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	1q24.2	F5	rs6025-T	0.0247	1E-300		2.5286865	[2.43-2.64]	Affymetrix [up to 34000000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	1q24.2	F5	rs6025-T	NR	1E-188		2.39	[2.25-2.53]	Affymetrix, Illumina [12923718] (imputed)	N
1878	chr1	169519048	169519049	rs6025	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs6025-?	NR	1E-188		0.8694	[0.81-0.93] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1878	chr1	169519048	169519049	rs6025	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	1q24.2	F5	rs6025-T	0.0265	2E-12		1.2	[1.14-1.26]	Affymetrix [at least 20323458] (imputed)	N
1878	chr1	169519048	169519049	rs6025	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	1q24.2	F5	rs6025-T	0.0233795	3E-11		0.14787269	[0.1-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1878	chr1	169519048	169519049	rs6025	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	1q24.2	F5	rs6025-T	0.02	7E-50		3.5	[2.96-4.11]	Affymetrix [9155762] (imputed)	N
1878	chr1	169519048	169519049	rs6025	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	1q24.2	F5	rs6025-T	0.0253	4E-137		2.927	[2.715- 3.154]	Illumina [at least 560000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q24.2	SELP, SELE, SELL	rs6025-G	0.97	3E-8	(EA)	1.1942284		Affymetrix, Illumina [~ 9000000] (imputed)	N
1878	chr1	169519048	169519049	rs6025	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	1q24.2	F5	rs6025-T	0.033	1E-96		3.25	[2.91-3.64]	Affymetrix, Illumina [6751884] (imputed)	N
1878	chr1	169519048	169519049	rs6025	22672568	Heit JA	2012-06-05	J Thromb Haemost	A genome-wide association study of venous thromboembolism identifies risk variants in chromosomes 1q24.2 and 9q.	Venous thromboembolism	1,503 European and other ancestry cases, 1,459 European and other ancestry controls	1,407 cases, 1,418 controls	1q24.2	F5	rs6025-T	0.063	2E-22		3.57	[2.76-4.60]	Illumina [~ 2500000] (imputed)	N
1878	chr1	169521852	169521853	rs6033	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5	rs6033-G	0.07873621	5E-25	(Coagulation Factor V)	0.8454	[0.69-1] unit decrease	Affymetrix [509946]	N
1878	chr1	169525807	169525808	rs2239854	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	1q24.2	F5	rs2239854-A	0.305	2E-9		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1878	chr1	169525807	169525808	rs2239854	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	1q24.2	F5	rs2239854-A	0.302	1E-12		0.031	[0.023-0.039] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
1878	chr1	169536649	169536650	rs2187955	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1q24.2	F5	rs2187955-G	0.52	1E-10		0.0056	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1878	chr1	169539710	169539711	rs9332539	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	1q24.2	NR	rs9332539-T	0.8952	2E-19		1.2069	[0.94-1.47] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
1878	chr1	169543130	169543131	rs12406092	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	1q24.2	F5	rs12406092-A	0.3	3E-9		0.028	[0.018-0.038] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1878	chr1	169543130	169543131	rs12406092	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	1q24.2	F5	rs12406092-A	0.3	2E-6	(EA)	0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1878	chr1	169543262	169543263	rs10800457	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	1q24.2		rs10800457-C	0.4854	5E-13		0.128875	[0.094-0.164] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169543262	169543263	rs10800457	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPACA7	5,364 Icelandic ancestry individuals	NA	1q24.2		rs10800457-C	0.4854	3E-11		0.124833	[0.088-0.162] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169543262	169543263	rs10800457	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	1q24.2		rs10800457-C	0.4854	2E-18		0.161254	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169549039	169549040	rs10489184	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	1q24.2	NR	rs10489184-?	NR	5E-17				Affymetrix, Illumina [6210504] (imputed)	N
1878	chr1	169549774	169549775	rs10753787	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	1q24.2		rs10753787-T	0.4692	3E-25		0.192713	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
1878	chr1	169549774	169549775	rs10753787	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1q24.2	F5	rs10753787-T	NR	2E-9	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1878	chr1	169549774	169549775	rs10753787	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	1q24.2	F5	rs10753787-T	NR	2E-9		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1878	chr1	169550962	169550963	rs6703865	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	1q24.2	SELP, F5	rs6703865-A	0.08	1E-9	(Hippocampal volume)			Illumina [2131250] (imputed)	N
1878	chr1	169551681	169551682	rs6028	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	1q24.2	SELP, F5	rs6028-C	NR	3E-9		0.226	[0.14-0.31] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1878	chr1	169562903	169562904	rs6128	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELP	5,364 Icelandic ancestry individuals	NA	1q24.2		rs6128-T	0.1523	5E-162		0.676925	[0.63-0.73] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169562903	169562904	rs6128	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs6128-T	0.158	2E-26	(P-selectin, SELP.4154.57.2)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169563950	169563951	rs6136	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	1q24.2		rs6136-G	0.103419829	4E-87	(GMP140)	0.60858214	unit decrease	Affymetrix, Illumina [8509364] (imputed)	N
1878	chr1	169563950	169563951	rs6136	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	SELP	rs6136-T	0.88078125	2E-184	(SELP, 4154_57_2)	1.0396128	[0.97-1.11] unit increase	Illumina [> 1000000] (imputed)	N
1878	chr1	169563950	169563951	rs6136	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	SELP	rs6136-G	0.108	3E-105	(P-selectin, SELP.4154.57.2)	0.81	[0.73-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169563950	169563951	rs6136	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	F5, SELP	rs6136-G	0.0997994	1E-25	(EA, P-Selectin)	0.7683	[0.63-0.91] unit decrease	Affymetrix [509946]	N
1878	chr1	169563950	169563951	rs6136	20167578	Barbalic M	2010-02-18	Hum Mol Genet	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	1q24.2	SELP	rs6136-T	NR	4E-61	(P-Selectin)	22.6	[19.86-25.34] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1878	chr1	169564166	169564167	rs742127	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1q24.2	SELP	rs742127-C	0.31	4E-15		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1878	chr1	169568697	169568698	rs760694	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	1q24.2	NR	rs760694-?	NR	3E-6		0.06351	[0.037-0.09] unit decrease novel	Illumina [6108953] (imputed)	N
1878	chr1	169571075	169571076	rs3917775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs3917775-C	0.441	9E-22	(L-Selectin, SELL.4831.4.2)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169572644	169572645	rs2205895	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	SELP	rs2205895-T	0.353	9E-15	(Torsin-1A-interacting protein 1, TOR1AIP1.9039.47.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169572644	169572645	rs2205895	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	SELP	rs2205895-T	0.353	7E-14	(Solute carrier family 22 member 16, SLC22A16.9969.8.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169572644	169572645	rs2205895	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	SELP	rs2205895-T	0.353	1E-12	(Galanin peptides, GAL.13389.8.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169572946	169572947	rs3917768	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs3917768-G	0.364	2E-20		0.2736	[0.22-0.33] unit increase	Illumina [17926607] (imputed)	N
1878	chr1	169574165	169574166	rs1997664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELL	5,355 Icelandic ancestry individuals	NA	1q24.2		rs1997664-T	0.4317	6E-16		0.146595	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169574165	169574166	rs1997664	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DTX1	5,356 Icelandic ancestry individuals	NA	1q24.2		rs1997664-T	0.4317	7E-14		0.14089	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169574165	169574166	rs1997664	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on monocyte	2,848 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs1997664-T	0.36426	4E-9		0.174	[0.12-0.23] unit decrease	Illumina [17914264] (imputed)	N
1878	chr1	169574728	169574729	rs3917761	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs3917761-T	0.2391	1E-15		0.1078	[0.082-0.134] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1878	chr1	169574886	169574887	rs2223303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs2223303-T	0.339	3E-24	(Cadherin-7, CDH7.7959.34.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169574886	169574887	rs2223303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	NR	rs2223303-T	0.339	2E-24	(T-cell surface glycoprotein CD3 epsilon chain, CD3E.8069.85.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1878	chr1	169577332	169577333	rs2142760	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2142760-G	0.36912	7E-11		0.1821	[0.13-0.24] unit increase	Illumina [18132558] (imputed)	N
1878	chr1	169577332	169577333	rs2142760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q24.2	SELP	rs2142760-G	0.455166	1E-19		0.020308089	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1878	chr1	169580289	169580290	rs2235302	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELP	5,364 Icelandic ancestry individuals	NA	1q24.2		rs2235302-T	0.4851	6E-27		0.202773	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
1878	chr1	169580289	169580290	rs2235302	20167578	Barbalic M	2010-02-18	Hum Mol Genet	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	1q24.2	SELP	rs2235302-T	NR	4E-16	(P-Selectin)	7.3	[5.54-9.06] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1878	chr1	169586945	169586946	rs2244526	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1q24.2	SELP	rs2244526-T	0.824	6E-6	(liability model)	0.09	[0.051-0.129] unit decrease	NR [19725427] (imputed)	N
1878	chr1	169592980	169592981	rs3917672	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1q24.2	NR	rs3917672-?	NR	3E-17				Affymetrix, Illumina [6211246] (imputed)	N
1878	chr1	169606589	169606590	rs72712030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.2	NR	rs72712030-A	0.219085	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
1879	chr1	169608916	169608917	rs1569476	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	1q24.2	SELP	rs1569476-?	NR	3E-7		0.003	[NR] unit increase	Illumina [478011]	N
1879	chr1	169622060	169622061	rs6687517	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1q24.2	NR	rs6687517-C	0.4798	6E-18		0.2615	[0.2-0.32] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
1879	chr1	169646860	169646861	rs1011267	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	1q24.2	NR	rs1011267-A	0.5033	2E-9		0.3271	[0.22-0.43] unit decrease	Illumina [5932107] (imputed)	N
1879	chr1	169649690	169649691	rs16862512	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	1q24.2	C1orf112	rs16862512-C		3E-8		0.349	[NR] unit increase	Illumina [24111857] (imputed)	N
1879	chr1	169651043	169651044	rs7531806	24399259	He L	2014-01-07	Nat Commun	Two new susceptibility loci 1q24.2 and 11p11.2 confer risk to severe acne.	Acne (severe)	1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	1,860 Han Chinese ancestry cases, 3,660 Han Chinese ancestry controls	1q24.2	SELL	rs7531806-A	0.4207	1E-8	(fixed effect model)	1.22	[1.12-1.28]	Illumina [809305]	N
1879	chr1	169652771	169652772	rs112361437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q24.2		rs112361437-C	NR	1E-8		0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1879	chr1	169655078	169655079	rs6691453	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q24.2	NR	rs6691453-?	NR	5E-7		0.0422	[0.026-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
1879	chr1	169659127	169659128	rs185120584	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs185120584-?	NR	3E-25		0.5452	[0.44-0.65] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1879	chr1	169660780	169660781	rs12938	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q24.2	C1orf112, SELL	rs12938-G	0.2761569	4E-25	(EA, L-Selectin)	0.4872	[0.4-0.58] unit decrease	Affymetrix [509946]	N
1879	chr1	169662741	169662742	rs4987369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte Absolute Count	3,019 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4987369-T	0.2774	4E-15		0.2378	[0.18-0.3] unit increase	Illumina [18121986] (imputed)	N
1879	chr1	169662741	169662742	rs4987369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on monocyte	2,848 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4987369-T	0.27896	4E-50		0.4474	[0.39-0.51] unit decrease	Illumina [17914264] (imputed)	N
1879	chr1	169664866	169664867	rs4987360	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4987360-G	0.27631	4E-29		0.3359	[0.28-0.39] unit increase	Illumina [18132558] (imputed)	N
1879	chr1	169665550	169665551	rs4987358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELL	5,355 Icelandic ancestry individuals	NA	1q24.2		rs4987358-T	0.298	2E-82		0.366364	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
1879	chr1	169665550	169665551	rs4987358	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4987358-T	0.24407	4E-28		0.3259	[0.27-0.38] unit increase	Illumina [17926607] (imputed)	N
1879	chr1	169665550	169665551	rs4987358	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	SELL	rs4987358-G	0.69828125	6E-48	(SELL, 4831_4_2)	0.38231817	[0.33-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1879	chr1	169665550	169665551	rs4987358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	SELL	rs4987358-T	0.274	7E-87	(L-Selectin, SELL.4831.4.2)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
1879	chr1	169665631	169665632	rs2223286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q24.2	SELL, C1orf112	rs2223286-C	0.31144	6E-11		0.015639547	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr1	169665631	169665632	rs2223286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q24.2		rs2223286-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1879	chr1	169666870	169666871	rs4987354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q24.2	SELL, C1orf112	rs4987354-A	0.269434	7E-10		0.01541457	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr1	169666986	169666987	rs4987353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q24.2	SELL, C1orf112	rs4987353-A	0.310721	4E-11		0.016648164	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1879	chr1	169666986	169666987	rs4987353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.2	NR	rs4987353-A	0.282516	1E-27				Affymetrix, Illumina [23467995] (imputed)	N
1879	chr1	169666986	169666987	rs4987353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q24.2	NR	rs4987353-A	0.310381	2E-27		0.021886	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1879	chr1	169685444	169685445	rs6693963	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs6693963-G	0.17601	2E-23		0.3461	[0.28-0.41] unit increase	Illumina [17926605] (imputed)	N
1879	chr1	169710071	169710071	rs777786730	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q24.2	NR	rs777786730-?	0.093669	5E-16		0.29195	[0.22-0.36] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1879	chr1	169710668	169710669	rs10489182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q24.2		rs10489182-G	NR	1E-17		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1879	chr1	169710668	169710669	rs10489182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q24.2	SELE, C1orf112	rs10489182-G	0.188876	4E-11		0.018656304	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr1	169710668	169710669	rs10489182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q24.2	SELE, C1orf112	rs10489182-G	0.188871	5E-12		0.020509792	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr1	169710668	169710669	rs10489182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q24.2	NR	rs10489182-G	0.193163	2E-10		0.014763	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1879	chr1	169718235	169718236	rs12410806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q24.2		rs12410806-A	NR	3E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1879	chr1	169722880	169722881	rs68113309	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs68113309-C	0.17524	2E-18		0.3279	[0.25-0.4] unit increase	Illumina [17926605] (imputed)	N
1879	chr1	169725484	169725485	rs2901177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte Absolute Count	3,019 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2901177-T	0.67826	4E-8		0.1752	[0.11-0.24] unit decrease	Illumina [18121986] (imputed)	N
1879	chr1	169725484	169725485	rs2901177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2901177-T	0.67839	4E-13		0.2234	[0.16-0.28] unit decrease	Illumina [18132558] (imputed)	N
1879	chr1	169725484	169725485	rs2901177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on monocyte	2,848 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs2901177-T	0.6748799999999999	7E-17		0.2507	[0.19-0.31] unit increase	Illumina [17914264] (imputed)	N
1879	chr1	169727881	169727882	rs4265482	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q24.2	SELE	rs4265482-T	0.78015625	8E-7	(SELE, 3470_1_2)	0.14340207	[0.087-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1879	chr1	169728516	169728517	rs4656716	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	1q24.2		rs4656716-A	0.32	6E-39		0.1103	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1879	chr1	169728516	169728517	rs4656716	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4656716-G	0.67696	4E-11		0.184	[0.13-0.24] unit decrease	Illumina [18351549] (imputed)	N
1879	chr1	169728516	169728517	rs4656716	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- Dendritic Cell %Dendritic Cell	3,410 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs4656716-G	0.67696	8E-10		0.174	[0.12-0.23] unit decrease	Illumina [18351549] (imputed)	N
1879	chr1	169728915	169728916	rs7526645	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L on CD62L+ Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs7526645-T	0.45999	5E-11		0.1721	[0.12-0.22] unit increase	Illumina [17926566] (imputed)	N
1879	chr1	169732742	169732743	rs12132692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1q24.2		rs12132692-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1879	chr1	169736555	169736555	rs386368685	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- myeloid Dendritic Cell Absolute Count	3,387 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q24.2		rs386368685-TA	0.6805	4E-8		0.1564	[0.1-0.21] unit decrease	Illumina [18342043] (imputed)	N
1879	chr1	169738201	169738202	rs12027035	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	1q24.2		rs12027035-?	NR	1E-16				Affymetrix [7338548] (imputed)	N
1879	chr1	169738201	169738202	rs12027035	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels	4,525 East Asian ancestry individuals	NA	1q24.2		rs12027035-?	NR	5E-14		0.0305	[0.023-0.038] unit decrease	Affymetrix [7338548] (imputed)	N
1880	chr1	169794504	169794505	rs12122803	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs12122803-?	NR	7E-20		0.3453	[0.27-0.42] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1881	chr1	169900926	169900927	rs61806081	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	1q24.2	KIFAP3	rs61806081-A	0.039	8E-7	(Antiinflammatory preparations, non-steroids for topical use [M02AA])	2.46		Illumina [16500000] (imputed)	N
1881	chr1	169923675	169923676	rs508063	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	1q24.2	C1orf112, SCYL3, KIFAP3	rs508063-A	NR	6E-7		1.2	[1.12-1.28]	Illumina [7436415] (imputed)	N
1881	chr1	169934063	169934064	rs674896	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q24.2	NR	rs674896-?	NR	3E-6		0.0649	[0.038-0.092] unit decrease	Illumina [at least 560000] (imputed)	N
1881	chr1	169941407	169941408	rs688565	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs688565-?	NR	7E-11		0.1665	[0.12-0.22] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1881	chr1	169995801	169995802	rs1541160	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1q24.2	KIFAP3	rs1541160-C	NR	2E-8	(survival)	0.58	[0.38-0.78] years increase	Illumina [288357]	N
1882	chr1	170042535	170042536	rs76993477	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q24.2	NR	rs76993477-?	NR	9E-6		0.0606	[0.034-0.087] unit increase	Illumina [at least 560000] (imputed)	N
1882	chr1	170051840	170051841	rs115476742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.2		rs115476742-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1882	chr1	170065028	170065029	rs76134841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	KIFAP3	rs76134841-T	NR	1E-8		0.0367747	[0.024-0.049] unit increase	Affymetrix [321114] (imputed)	N
1882	chr1	170092670	170092671	rs12136148	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs12136148-?	NR	2E-13		0.1728	[0.13-0.22] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1882	chr1	170128607	170128608	rs495524	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	1q24.2	intergenic	rs495524-T	0.42	2E-6			[NR]	Affymetrix [398699]	N
1883	chr1	170140311	170140312	rs112225107	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs112225107-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170161010	170161011	rs77849060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs77849060-A	NR	2E-9		0.0384324	[0.026-0.051] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170161010	170161011	rs77849060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs77849060-A	NR	2E-9		0.0382876	[0.026-0.051] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170170093	170170094	rs4656744	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	1q24.2		rs4656744-T	0.67031	2E-23		0.0935488	[0.074-0.113] decrease	Affymetrix [11014269] (imputed)	N
1883	chr1	170170093	170170094	rs4656744	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q24.2	LINC01681	rs4656744-T	0.6679	2E-8		0.081	[0.052-0.11] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1883	chr1	170173261	170173262	rs6687139	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q24.2	LINC01681	rs6687139-A	0.9001	2E-13		0.0222	[0.016-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
1883	chr1	170173442	170173443	rs72718146	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1q24.2	NR	rs72718146-?	NR	3E-6		0.0936	[0.054-0.133] unit increase	Illumina [at least 560000] (imputed)	N
1883	chr1	170174297	170174298	rs12144655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.2	NR	rs12144655-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170177802	170177803	rs112636902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs112636902-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170179929	170179930	rs991628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs991628-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170180337	170180338	rs7535510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3, ISCUP1	rs7535510-T	NR	3E-11		0.0203246	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170180337	170180338	rs7535510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3, ISCUP1	rs7535510-T	NR	3E-11		0.0203014	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170181362	170181363	rs17350032	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs17350032-C	NR	6E-9		0.0329599	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
1883	chr1	170185640	170185641	rs10800507	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	1q24.2	METTL11B, KIFAP3	rs10800507-C	0.51	2E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1883	chr1	170193062	170193063	rs74981093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs74981093-G	NR	4E-10		0.0351403	[0.024-0.046] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170193062	170193063	rs74981093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs74981093-G	NR	3E-10		0.0354691	[0.024-0.046] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170193824	170193825	rs72700114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q24.2		rs72700114-C	NR	2E-29		0.2272	[0.19-0.27] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1883	chr1	170193824	170193825	rs72700114	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q24.2	LINC01142	rs72700114-C	0.076	3E-54		1.22	[1.19-1.26]	Illumina [34740186] (imputed)	N
1883	chr1	170193824	170193825	rs72700114	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	METTL11B, LINC01142	rs72700114-C	0.08	1E-46	(EA)	1.23	[1.19-1.26]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1883	chr1	170193824	170193825	rs72700114	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	METTL11B, LINC01142	rs72700114-C	0.07	7E-48		1.22	[1.19-1.26]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1883	chr1	170193824	170193825	rs72700114	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	1q24.2	PRRX1	rs72700114-C	0.069	4E-10		1.26	[1.17-1.36]	Illumina [8952551] (imputed)	N
1883	chr1	170193858	170193859	rs12122060	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	METTL11B, LINC01142	rs12122060-A	0.12	8E-34	(EA)	1.15		Affymetrix, Illumina [up to 12149979] (imputed)	N
1883	chr1	170194822	170194823	rs72700118	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q24.2	LINC01142	rs72700118-A	0.127	2E-36		1.14	[1.12-1.16]	Illumina [34740186] (imputed)	N
1883	chr1	170194822	170194823	rs72700118	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		1q24.2	METTl11B/KIFAP3	rs72700118-A	0.11	1E-14		1.24	1.17-1.31	Affymetrix, Illumina [at least 3187278] (imputed)	N
1883	chr1	170194822	170194823	rs72700118	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	1q24.2	METTL11B	rs72700118-A	0.12	3E-7		1.21	[1.12-1.29]	Affymetrix, Illumina [11795432] (imputed)	N
1883	chr1	170202562	170202563	rs2225588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs2225588-A	NR	1E-8		0.016118	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170202562	170202563	rs2225588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs2225588-A	NR	4E-9		0.016518	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170208226	170208227	rs1332951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs1332951-C	NR	5E-8		0.0160102	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170209789	170209790	rs4656748	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q24.2	NR	rs4656748-T	0.401758	4E-9		0.0189635	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
1883	chr1	170211624	170211625	rs60409158	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	1q24.2		rs60409158-?	NR	7E-6		0.09	[0.053-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1883	chr1	170212479	170212480	rs3121911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs3121911-A	NR	6E-10		0.0199364	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170212479	170212480	rs3121911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs3121911-A	NR	6E-10		0.0199762	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170216617	170216618	rs1332950	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs1332950-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170219704	170219705	rs10919339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs10919339-T	NR	2E-11		0.0191147	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170220201	170220202	rs1556497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-297H3.3	rs1556497-T	NR	1E-11		0.019251	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170223767	170223768	rs113976843	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs113976843-?	NR	1E-20		0.4305	[0.34-0.52] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1883	chr1	170224361	170224362	rs71635652	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q24.2	NR	rs71635652-G	NR	3E-11		0.0457529	NR unit increase	NR [NR] (imputed)	N
1883	chr1	170225562	170225563	rs2247347	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs2247347-T	0.7919	4E-8		0.0762	[0.049-0.103] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1883	chr1	170244230	170244231	rs1332952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	LINC01142	rs1332952-G	NR	1E-12		0.023411	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170244230	170244231	rs1332952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs1332952-G	NR	6E-13		0.0237953	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1883	chr1	170244230	170244231	rs1332952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs1332952-G	NR	1E-8		0.0196674	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1883	chr1	170246256	170246257	rs2990657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs2990657-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	2E-23		0.0378993	[0.03-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	4E-24		0.0385528	[0.031-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	7E-12		0.0263811	[0.019-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	1E-16		0.0328107	[0.025-0.041] unit increase	Affymetrix [321788] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	3E-10		0.0240168	[0.017-0.031] unit increase	Affymetrix [321016] (imputed)	N
1883	chr1	170259843	170259844	rs10753801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs10753801-A	NR	3E-10		0.0242063	[0.017-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1884	chr1	170271670	170271671	rs11802454	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.2		rs11802454-A	0.256	3E-13		0.1348	[0.099-0.171] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1884	chr1	170273130	170273131	rs61827994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	LINC01142	rs61827994-A	NR	1E-20		0.0269384	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170273130	170273131	rs61827994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs61827994-A	NR	3E-21		0.0273869	[0.022-0.033] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170273130	170273131	rs61827994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs61827994-A	NR	1E-11		0.0197915	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1884	chr1	170273130	170273131	rs61827994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs61827994-A	NR	2E-10		0.0185705	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1884	chr1	170274847	170274848	rs1332957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs1332957-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1884	chr1	170277720	170277721	rs35102909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs35102909-A	NR	3E-13		0.0213495	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1884	chr1	170277720	170277721	rs35102909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs35102909-A	NR	1E-14		0.0226164	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1884	chr1	170283043	170283044	rs986032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q24.2		rs986032-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1884	chr1	170293473	170293474	rs4656755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	LINC01142	rs4656755-A	NR	1E-8		0.0193616	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1884	chr1	170303068	170303069	rs6427244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs6427244-G	NR	7E-25		0.0307507	[0.025-0.037] unit increase	Affymetrix [321788] (imputed)	N
1884	chr1	170308386	170308387	rs2104912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs2104912-T	NR	3E-34		0.03508	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170308386	170308387	rs2104912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs2104912-T	NR	2E-34		0.0352389	[0.03-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170308386	170308387	rs2104912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs2104912-T	NR	2E-21		0.0272203	[0.022-0.033] unit increase	Affymetrix [321016] (imputed)	N
1884	chr1	170310092	170310093	rs1556500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs1556500-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1884	chr1	170320750	170320751	rs10753805	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	1q24.2	NR	rs10753805-A	0.7289	3E-65		0.0343	[0.03-0.038] unit increase	NR [~ 27400000] (imputed)	N
1884	chr1	170322147	170322148	rs10919360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919360-G	NR	2E-12		0.0208492	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1884	chr1	170322147	170322148	rs10919360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919360-G	NR	3E-9		0.0175058	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1884	chr1	170331291	170331292	rs200763491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q24.2	HAUS4P1	rs200763491-AT	NR	4E-11		0.0233143	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1884	chr1	170331291	170331292	rs200763491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q24.2	HAUS4P1	rs200763491-AT	NR	2E-11		0.0236361	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
1884	chr1	170331291	170331292	rs200763491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs200763491-AT	NR	2E-32		0.0393068	[0.033-0.046] unit increase	Affymetrix [321788] (imputed)	N
1884	chr1	170332859	170332859	rs371347054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs371347054-T	NR	6E-9		0.0175214	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1884	chr1	170332859	170332859	rs371347054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs371347054-T	NR	3E-11		0.0191827	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1884	chr1	170335827	170335828	rs12120558	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs12120558-?	NR	7E-18		0.3707	[0.29-0.46] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1884	chr1	170336084	170336085	rs113452299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs113452299-C	NR	8E-11		0.0387163	[0.027-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170336084	170336085	rs113452299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs113452299-C	NR	4E-11		0.0392921	[0.028-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170336084	170336085	rs113452299	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs113452299-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1884	chr1	170336234	170336235	rs4537621	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4537621-G	0.600642	2E-10		0.0557719	[0.038-0.074] decrease	Affymetrix [11014269] (imputed)	N
1884	chr1	170337355	170337356	rs4656762	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	1q24.2	METT11B	rs4656762-C	NR	5E-9		1.13	[1.08-1.17]	NR [2286360] (imputed)	N
1884	chr1	170339778	170339779	rs11801771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs11801771-G	NR	1E-8		0.0189434	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1884	chr1	170341521	170341522	rs78003935	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q24.2	NR	rs78003935-A	NR	2E-20		0.06	NR unit increase	NR [NR] (imputed)	N
1884	chr1	170341521	170341522	rs78003935	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	1q24.2	METTL11B, GORAB	rs78003935-?	NR	1E-9		1.1614403	[1.11-1.22]	Illumina [13436641] (imputed)	N
1884	chr1	170343371	170343372	rs1113230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs1113230-T	NR	7E-13		0.0236203	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170343371	170343372	rs1113230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs1113230-T	NR	2E-13		0.0241238	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170343552	170343553	rs1591129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs1591129-C	NR	3E-15		0.0230635	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170343552	170343553	rs1591129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs1591129-C	NR	4E-16		0.0237851	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170343552	170343553	rs1591129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs1591129-C	NR	4E-8		0.0166896	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1884	chr1	170352100	170352101	rs12131969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs12131969-A	NR	3E-11		0.0191971	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170352100	170352101	rs12131969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs12131969-A	NR	4E-11		0.0190577	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs3119837-T	NR	2E-52		0.0483414	[0.042-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs3119837-T	NR	8E-54		0.048994	[0.043-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs3119837-T	NR	2E-25		0.0333478	[0.027-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs3119837-T	NR	3E-24		0.0326625	[0.026-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs3119837-?	NR	3E-57				Affymetrix [~ 8270000] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.2	NR	rs3119837-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1884	chr1	170352112	170352113	rs3119837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q24.2		rs3119837-?	NR	2E-56				NR [~ 8900000] (imputed)	N
1884	chr1	170354386	170354387	rs10919378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q24.2		rs10919378-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1884	chr1	170361163	170361164	rs10919382	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q24.2	GORAB	rs10919382-G	NR	5E-25		0.0655539	NR unit increase	NR [NR] (imputed)	N
1884	chr1	170361535	170361536	rs10919383	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q24.2	NR	rs10919383-C	0.381219	3E-48		0.0477945	[0.041-0.054] unit increase	NR [19129689] (imputed)	N
1884	chr1	170367465	170367466	rs4471313	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs4471313-T	0.7203	8E-9	(EA, women)	0.0301	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170367465	170367466	rs4471313	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs4471313-T	0.7203	7E-7	(EA)	0.0199	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	8E-11	(32 ms)	0.0371732	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	5E-11	(28 ms)	0.0374286	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	4E-11	(30 ms)	0.0380111	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	4E-10	(24 ms)	0.0355408	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	3E-8	(38 ms)	0.0317281	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	2E-8	(36 ms)	0.0326894	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	1E-9	(34 ms)	0.0349949	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170369105	170369105	rs57831591	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q24.2	GORAB	rs57831591-G	0.416394	1E-10	(26 ms)	0.0365202	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1884	chr1	170372434	170372435	rs10919387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919387-C	NR	1E-15		0.0225172	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170372434	170372435	rs10919387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919387-C	NR	8E-16		0.0226734	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1884	chr1	170372434	170372435	rs10919387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919387-C	NR	1E-9		0.0178414	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1884	chr1	170372434	170372435	rs10919387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs10919387-C	NR	1E-8		0.0159446	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1884	chr1	170372434	170372435	rs10919387	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.2		rs10919387-?	NR	1E-9		0.0114434	[0.0074-0.0155] unit decrease	Affymetrix [20259828] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	1q24.2	NR	rs10919388-?	NR	8E-7		0.04475043	[0.027-0.062] unit increase	Illumina [30305130] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	1q24.2	NR	rs10919388-?	NR	8E-6		0.03599956	[0.02-0.052] unit increase	Illumina [at least 21894105] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q24.2	NR	rs10919388-C	0.73	2E-62		0.033	[0.029-0.037] unit increase	Affymetrix [2446094] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q24.2	NR	rs10919388-C	0.73	5E-8				Affymetrix [2446094] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q24.2	NR	rs10919388-A	0.2729	1E-65		0.0333	[0.03-0.037] unit decrease	NR [~ 27400000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q24.2	NA	rs10919388-A	0.2729	6E-43		0.0266	[0.023-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q24.2	NR	rs10919388-A	0.2729	6E-43		0.0266	[0.023-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.2	GORAB	rs10919388-C	0.7242	5E-12	(EA, women)	0.0395	[0.028-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.2	GORAB	rs10919388-C	0.7242	4E-10	(EA)	0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q24.2	GORAB	rs10919388-C	0.7258	3E-6	(EA, women)	0.0582	[0.034-0.083] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.2	GORAB	rs10919388-C	0.7242	2E-8	(EA)	0.0281	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.2	GORAB	rs10919388-C	0.7235	9E-8	(EA, women)	0.0344	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.2	GORAB	rs10919388-?	0.7242	9E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.2	GORAB	rs10919388-?	0.7242	4E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	5E-6	(women)	0.0294	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	3E-6		0.0225	[0.013-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	7E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	8E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.2	GORAB	rs10919388-A	0.28	2E-7	(women)	0.0293	[0.018-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q24.2	NR	rs10919388-A	0.277856953814921	1E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q24.2	NR	rs10919388-A	0.277856953814921	7E-11		0.02485462	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs10919388-C	0.7226	3E-9	(EA)	0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs10919388-C	0.7211	5E-10	(EA, women)	0.0326	[0.022-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs10919388-C	0.7203	2E-10		0.0246	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170372502	170372503	rs10919388	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	GORAB	rs10919388-C	0.7189	5E-11	(women)	0.0334	[0.023-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1884	chr1	170379726	170379727	rs4656767	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q24.2	GORAB, PRRX1, LOC284688, MIR3119 -1, MIR3119 -2, METTL11B, KIFAP3	rs4656767-A	0.7093	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170379726	170379727	rs4656767	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q24.2	GORAB, PRRX1, LOC284688, METTL11B, KIFAP3, MIR3119-1, MIR3119-2	rs4656767-A	0.7093	5E-7		0.0259	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1884	chr1	170382956	170382956	rs539172939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs539172939-CTATATA	NR	5E-8		0.017041	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170382956	170382956	rs539172939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	HAUS4P1	rs539172939-CTATATA	NR	1E-8		0.017794	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1884	chr1	170383301	170383302	rs72707650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.2		rs72707650-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1885	chr1	170397234	170397235	rs35841079	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q24.2	NR	rs35841079-?	NR	9E-8				Illumina [at least 7383741] (imputed)	N
1885	chr1	170429791	170429792	rs10919410	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q24.2	NR	rs10919410-?	NR	1E-19				Affymetrix [NR]	N
1885	chr1	170433897	170433898	rs10919411	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs10919411-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1885	chr1	170473069	170473070	rs61826177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.2	NR	rs61826177-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1885	chr1	170479830	170479831	rs115156754	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q24.2	NR	rs115156754-?	NR	2E-7		8449.044	NR unit decrease	Illumina [2379855]	N
1885	chr1	170501455	170501456	rs11578119	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	1q24.2	PRRX1	rs11578119-C	NR	3E-20		0.131794	[0.1-0.16] unit increase	Affymetrix [27512692] (imputed)	N
1885	chr1	170510458	170510459	rs17346300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	GORAB	rs17346300-T	NR	3E-8		0.0361829	[0.023-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1885	chr1	170510458	170510459	rs17346300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	GORAB	rs17346300-T	NR	3E-8		0.0361647	[0.023-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1885	chr1	170510458	170510459	rs17346300	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs17346300-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1885	chr1	170512368	170512369	rs2421326	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1q24.2		rs2421326-T	0.38	4E-11		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1885	chr1	170513185	170513186	rs61826201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	GORAB	rs61826201-T	NR	2E-28		0.0337882	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1885	chr1	170513185	170513186	rs61826201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	GORAB	rs61826201-T	NR	5E-29		0.0341254	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1885	chr1	170513185	170513186	rs61826201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	GORAB	rs61826201-T	NR	4E-13		0.0223267	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1885	chr1	170513185	170513186	rs61826201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	GORAB	rs61826201-T	NR	6E-13		0.0222607	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1885	chr1	170519883	170519884	rs16863425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	GORAB	rs16863425-C	NR	2E-18		0.0274698	[0.021-0.034] unit increase	Affymetrix [321788] (imputed)	N
1885	chr1	170519883	170519884	rs16863425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	GORAB	rs16863425-C	NR	5E-14		0.0226792	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1885	chr1	170521375	170521376	rs913257	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q24.2	GORAB	rs913257-G	0.54017	1E-10		0.0118007	[0.0082-0.0154] unit increase	NR [13737936] (imputed)	N
1885	chr1	170521375	170521376	rs913257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q24.2		rs913257-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1886	chr1	170549886	170549887	rs10919435	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs10919435-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1886	chr1	170554330	170554331	rs12567093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs12567093-C	NR	8E-13		0.02189	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1886	chr1	170554330	170554331	rs12567093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs12567093-C	NR	4E-13		0.0221731	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1886	chr1	170554330	170554331	rs12567093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs12567093-C	NR	6E-12		0.0218721	[0.016-0.028] unit increase	Affymetrix [321788] (imputed)	N
1886	chr1	170554330	170554331	rs12567093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs12567093-C	NR	8E-10		0.018757	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1886	chr1	170560766	170560767	rs11808978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs11808978-G	NR	2E-10		0.0265542	[0.018-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1886	chr1	170560766	170560767	rs11808978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	RP11-545I10.2	rs11808978-G	NR	1E-10		0.0270259	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1886	chr1	170566004	170566005	rs763567	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q24.2	NR	rs763567-?	NR	9E-6		0.0365	[0.02-0.053] unit increase	Illumina [at least 560000] (imputed)	N
1886	chr1	170569316	170569317	rs3903239	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	1q24.2	PRRX1	rs3903239-G	0.543	1E-7		1.41	[1.24-1.60]	Affymetrix [642422]	N
1886	chr1	170569316	170569317	rs3903239	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	1q24.2	PRRX1	rs3903239-G	0.45	8E-14		1.14	[1.10-1.17]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1886	chr1	170572945	170572946	rs10919437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	RP1-79C4.1	rs10919437-A	NR	4E-8		0.0171046	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1886	chr1	170580654	170580655	rs143955152	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DRGX	5,366 Icelandic ancestry individuals	NA	1q24.2		rs143955152-T	0.01467	6E-16		0.642228	[0.49-0.8] unit increase	Illumina [7506463] (imputed)	N
1886	chr1	170585831	170585832	rs619456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.2		rs619456-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1886	chr1	170587339	170587340	rs577676	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 51)	4,680 European ancestry individuals	3,566 European ancestry individuals	1q24.2		rs577676-T	0.455694835	1E-8				Illumina [7417619] (imputed)	N
1886	chr1	170587339	170587340	rs577676	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q24.2	LINC01142	rs577676-C	0.562	2E-20		1.07	[1.05-1.08]	Illumina [34740186] (imputed)	N
1886	chr1	170587339	170587340	rs577676	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		1q24.2	PRRX1	rs577676-C	0.55	3E-12		1.15	1.1-1.19	Affymetrix, Illumina [at least 3187278] (imputed)	N
1886	chr1	170590769	170590770	rs191436110	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs191436110-?	NR	5E-8		0.5804	[0.37-0.79] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1886	chr1	170591309	170591310	rs651386	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	1q24.2	PRRX1	rs651386-A	0.57	6E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [11795432] (imputed)	N
1886	chr1	170598186	170598187	rs638704	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	1q24.2	PRRX1	rs638704-C	0.43	1E-7		1.09	[1.06-1.13]	NR [~ 8000000] (imputed)	N
1886	chr1	170608485	170608486	rs535330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	RP1-79C4.1	rs535330-C	NR	3E-8		0.0193998	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1886	chr1	170608485	170608486	rs535330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	RP1-79C4.1	rs535330-C	NR	4E-9		0.0197883	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1886	chr1	170612872	170612873	rs639652	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	1q24.2	PRRX1	rs639652-G	0.54	4E-9	(Japanese)	1.135	[1.086-1.184]	Illumina [5018049] (imputed)	N
1886	chr1	170615659	170615660	rs61824886	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q24.2	PRRX1	rs61824886-C	0.85	6E-13		0.67	[0.49-0.85] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1886	chr1	170615723	170615724	rs61824887	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q24.2	PRRX1	rs61824887-A	0.8711	2E-13		0.7402	[0.54-0.94] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1886	chr1	170617305	170617306	rs608930	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	GORAB, PRRX1	rs608930-G	0.44	2E-42		1.1	[1.09-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1886	chr1	170623108	170623109	rs588837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q24.2		rs588837-G	0.46187573	7E-12		0.15811305	[0.11-0.2] unit decrease	Illumina [13427194] (imputed)	N
1886	chr1	170623108	170623109	rs588837	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	1q24.2		rs588837-G	0.461118767	5E-18		0.9062667	[0.886304586-0.926678407]	Illumina [8919992] (imputed)	N
1886	chr1	170624761	170624762	rs17615674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs17615674-G	NR	7E-9		0.0239365	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1886	chr1	170626952	170626953	rs663887	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.2	PRRX1	rs663887-A	0.293	5E-191	(Dorsal root ganglia homeobox protein, DRGX.8034.6.3)	0.72	[0.68-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1886	chr1	170628387	170628388	rs583006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs583006-G	NR	6E-9		0.018655	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1886	chr1	170633895	170633896	rs659580	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q24.2	NR	rs659580-?	NR	3E-8				Illumina [at least 7383741] (imputed)	N
1886	chr1	170633895	170633896	rs659580	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	1q24.2	PRRX1	rs659580-T	NR	1E-6	(EA)	1.28	[0.71-1.85] unit increase	Affymetrix [~ 2300000] (imputed)	N
1886	chr1	170635083	170635084	rs503706	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	PRRX1	rs503706-T	0.44	2E-39	(EA)	1.1	[1.09-1.12]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1886	chr1	170638332	170638333	rs520525	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	1q24.2	PRRX1	rs520525-A	0.71	6E-16		1.12	[1.09-1.20]	Affymetrix, Illumina [11795432] (imputed)	N
1886	chr1	170638657	170638658	rs10919449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs10919449-A	NR	5E-9		0.0183755	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1886	chr1	170638657	170638658	rs10919449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.2	NR	rs10919449-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1886	chr1	170641732	170641733	rs78710246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs78710246-T	NR	1E-10		0.032134	[0.022-0.042] unit increase	Affymetrix [319769] (imputed)	N
1886	chr1	170641732	170641733	rs78710246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs78710246-T	NR	6E-11		0.0325686	[0.023-0.042] unit increase	Affymetrix [319769] (imputed)	N
1886	chr1	170641732	170641733	rs78710246	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs78710246-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1886	chr1	170642898	170642899	rs593479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs593479-C	NR	5E-9		0.0172266	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1886	chr1	170643277	170643278	rs6693796	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1q24.2	PRRX1	rs6693796-?	NR	6E-8		0.019	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1886	chr1	170645488	170645489	rs2150026	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	1q24.2	PRRX1	rs2150026-C	0.29	1E-6		1.15	[1.09-1.21]	Affymetrix, Illumina [8000000] (imputed)	N
1886	chr1	170649276	170649277	rs4656220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.2	PRRX1	rs4656220-T	NR	2E-10		0.0202561	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1886	chr1	170649276	170649277	rs4656220	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q24.2	PRRX1	rs4656220-T	0.4224	2E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1886	chr1	170649276	170649277	rs4656220	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q24.2	PRRX1	rs4656220-T	0.374	7E-10		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1886	chr1	170649278	170649279	rs4656794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs4656794-A	NR	2E-11		0.021375	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
1886	chr1	170649278	170649279	rs4656794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs4656794-A	NR	2E-11		0.0195876	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1887	chr1	170657993	170657994	rs531650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs531650-C	NR	2E-8		0.0175746	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1887	chr1	170658354	170658355	rs12744534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs12744534-G	NR	4E-10		0.0277169	[0.019-0.036] unit increase	Affymetrix [321788] (imputed)	N
1887	chr1	170658354	170658355	rs12744534	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	PRRX1	rs12744534-A	0.8714	2E-6	(EA,men)	0.0374	[0.022-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1887	chr1	170658354	170658355	rs12744534	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	PRRX1	rs12744534-A	0.8714	2E-6	(EA, women)	0.0334	[0.02-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1887	chr1	170658354	170658355	rs12744534	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.2	PRRX1	rs12744534-A	0.8714	2E-10	(EA)	0.0345	[0.024-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1887	chr1	170680144	170680145	rs10800531	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q24.2	PRRX1	rs10800531-A	0.534843	1E-44		0.025806	[0.022-0.029] unit decrease	NR [13737936] (imputed)	N
1887	chr1	170680144	170680145	rs10800531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q24.2		rs10800531-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1887	chr1	170683707	170683707	rs35363078	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.2		rs35363078-?	NR	4E-45		0.0289188	[0.025-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1887	chr1	170683707	170683707	rs35363078	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q24.2	PRRX1	rs35363078-T	0.533595	3E-7	(women)	0.0222859	[0.013-0.031] unit decrease	NR [17166351] (imputed)	N
1887	chr1	170683707	170683707	rs35363078	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q24.2	PRRX1	rs35363078-T	0.533496	8E-11		0.0213563	[0.015-0.028] unit decrease	NR [17166351] (imputed)	N
1887	chr1	170684168	170684169	rs2421490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs2421490-T	NR	1E-22		0.0391486	[0.031-0.047] unit increase	Affymetrix [321016] (imputed)	N
1887	chr1	170684430	170684431	rs2187895	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q24.2	NR	rs2187895-?	NR	8E-6		0.046	[0.026-0.066] unit increase	Illumina [at least 560000] (imputed)	N
1887	chr1	170690592	170690593	rs2213751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q24.2		rs2213751-G	NR	3E-26		0.0163	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1887	chr1	170690592	170690593	rs2213751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q24.2		rs2213751-G	0.478856	5E-15		0.015877	[0.012-0.02] unit increase	Illumina [13479295] (imputed)	N
1887	chr1	170690592	170690593	rs2213751	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q24.2	PRRX1	rs2213751-?	NR	8E-15		0.022283204	[0.017-0.028] unit increase	Illumina [27896057] (imputed)	N
1887	chr1	170691130	170691131	rs76839558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.2		rs76839558-?	NR	4E-26				NR [~ 8900000] (imputed)	N
1887	chr1	170693089	170693089	rs34840883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs34840883-AT	NR	9E-11		0.0190064	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1887	chr1	170693089	170693089	rs34840883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs34840883-AT	NR	1E-9		0.0171245	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1887	chr1	170693537	170693538	rs12142379	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q24.2	PRRX1	rs12142379-C	0.06	4E-11	(EA)	1.11		Affymetrix, Illumina [up to 12149979] (imputed)	N
1887	chr1	170699148	170699149	rs12409048	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1q24.2	PRRX1	rs12409048-?	NR	2E-9		0.4772	[0.32-0.63] unit increase	Affymetrix [11100000] (imputed)	N
1887	chr1	170700757	170700758	rs1476040	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q24.2	PRRX1	rs1476040-A	0.2628	2E-6		0.0484	[0.029-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1887	chr1	170709592	170709593	rs12046534	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q24.2	NR	rs12046534-G	0.554832	1E-10		0.0429369	[0.029-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
1887	chr1	170711936	170711937	rs12022896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs12022896-A	NR	2E-12		0.0289726	[0.021-0.037] unit increase	Affymetrix [321788] (imputed)	N
1887	chr1	170712489	170712490	rs2421492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs2421492-A	NR	8E-9		0.0163208	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1887	chr1	170715109	170715110	rs6679313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs6679313-G	NR	7E-14		0.0239906	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1887	chr1	170715109	170715110	rs6679313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs6679313-G	NR	1E-8		0.0184153	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1887	chr1	170727441	170727442	rs4656224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q24.2		rs4656224-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1887	chr1	170729568	170729568	rs749629949	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs749629949-CT	0.814003	1E-10		0.0739303	[0.051-0.097] decrease	Affymetrix [11014269] (imputed)	N
1887	chr1	170734889	170734890	rs10919462	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	4,680 European ancestry individuals	3,566 European ancestry individuals	1q24.2		rs10919462-A	0.448328267	3E-11				Illumina [7417619] (imputed)	N
1887	chr1	170739813	170739827	rs200895399	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q24.2	NR	rs200895399-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
1887	chr1	170741708	170741709	rs12044055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs12044055-A	NR	6E-11		0.0299213	[0.021-0.039] unit increase	Affymetrix [321114] (imputed)	N
1887	chr1	170742227	170742228	rs1029320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs1029320-G	NR	2E-8		0.0166467	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1887	chr1	170762679	170762680	rs10919470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.2	PRRX1	rs10919470-A	NR	4E-8		0.0181106	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1887	chr1	170762679	170762680	rs10919470	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q24.2	NR	rs10919470-A	0.309832	1E-28		0.03705	[0.031-0.044] unit increase	NR [19129689] (imputed)	N
1887	chr1	170762679	170762680	rs10919470	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q24.2	PRRX1, MROH9	rs10919470-G	0.6915	4E-10		0.0927	[0.063-0.122] unit increase	Affymetrix [~ 11900000] (imputed)	N
1887	chr1	170764914	170764915	rs10800542	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q24.2	PRRX1, MROH9	rs10800542-T	0.6306	1E-8		0.0799	[0.052-0.108] unit increase	Affymetrix [~ 11900000] (imputed)	N
1887	chr1	170772775	170772776	rs2206310	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	1q24.2		rs2206310-G	0.37	4E-8		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1887	chr1	170773030	170773031	rs2143109	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q24.2	PRRX1	rs2143109-G	NR	1E-12		0.0450702	NR unit increase	NR [NR] (imputed)	N
1887	chr1	170773520	170773521	rs10737554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.2	NR	rs10737554-?	NR	6E-24				Affymetrix [~ 8270000] (imputed)	N
1887	chr1	170780088	170780089	rs10800544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs10800544-G	NR	4E-14		0.0260791	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1887	chr1	170783405	170783405	rs374855374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs374855374-C	NR	5E-20		0.0378164	[0.03-0.046] unit increase	Affymetrix [321016] (imputed)	N
1887	chr1	170783629	170783630	rs6674179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs6674179-G	NR	4E-8		0.016623	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170786994	170786995	rs7528013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs7528013-C	NR	3E-10		0.0204774	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1888	chr1	170786994	170786995	rs7528013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs7528013-C	NR	9E-11		0.0210491	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1888	chr1	170786994	170786995	rs7528013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs7528013-C	NR	6E-9		0.0191403	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1888	chr1	170786994	170786995	rs7528013	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.2	NR	rs7528013-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1888	chr1	170789364	170789365	rs11802891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs11802891-C	NR	4E-9		0.0193586	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1888	chr1	170798443	170798444	rs10753823	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q24.2	PRRX1, MROH9	rs10753823-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
1888	chr1	170799176	170799177	rs10753824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs10753824-C	NR	3E-13		0.023976	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1888	chr1	170799176	170799177	rs10753824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs10753824-C	NR	2E-9		0.019691	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1888	chr1	170800817	170800817	rs35493259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q24.2	PRRX1	rs35493259-AT	NR	4E-9		0.0273381	[0.018-0.036] unit increase	Affymetrix [323858] (imputed)	N
1888	chr1	170800817	170800817	rs35493259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.2	PRRX1	rs35493259-AT	NR	4E-14		0.0334601	[0.025-0.042] unit increase	Affymetrix [323123] (imputed)	N
1888	chr1	170805626	170805627	rs6664881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	PRRX1	rs6664881-G	NR	2E-10		0.0208446	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1888	chr1	170805626	170805627	rs6664881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	PRRX1	rs6664881-G	NR	1E-13		0.0232828	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170805626	170805627	rs6664881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q24.2		rs6664881-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1888	chr1	170811798	170811799	rs12132445	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1q24.2	PRRX1, MROH9	rs12132445-A	NR	7E-8		1.171	[1.11-1.23]	Illumina [5719137] (imputed)	N
1888	chr1	170814036	170814037	rs926439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.2	MROH9	rs926439-A	NR	2E-13		0.0273923	[0.02-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1888	chr1	170828020	170828021	rs10800558	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	1q24.2	PRRX1	rs10800558-?	NA	7E-9		1.38	[0.91-1.85] unit increase	Affymetrix [5541230] (imputed)	N
1888	chr1	170829578	170829579	rs12118084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	MROH9	rs12118084-T	NR	7E-10		0.0174831	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170834429	170834430	rs55811103	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	1q24.2	C1orf129	rs55811103-C	0.7932	3E-8		1.0303335	NR	Affymetrix [~ 9600000] (imputed)	N
1888	chr1	170843073	170843074	rs12734161	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.2	MROH9	rs12734161-T	NR	4E-13		0.0254398	[0.019-0.032] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170854608	170854609	rs10919507	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q24.2	NR	rs10919507-?	NR	2E-7		0.1502	[0.094-0.206] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1888	chr1	170876297	170876298	rs10919526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	MROH9	rs10919526-C	NR	2E-8		0.0160678	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170886643	170886644	rs66539320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	MROH9	rs66539320-G	NR	3E-8		0.0200613	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
1888	chr1	170901295	170901296	rs4656813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	MROH9	rs4656813-A	NR	8E-14		0.0301395	[0.022-0.038] unit increase	Affymetrix [321016] (imputed)	N
1888	chr1	170901444	170901445	rs4656815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.3	MROH9	rs4656815-A	NR	1E-9		0.0190064	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1888	chr1	170906757	170906758	rs184483498	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	1q24.3	NR	rs184483498-A	0.071	8E-6		2.53	[1.68-3.80]	Illumina [7261187] (imputed)	N
1888	chr1	170911564	170911565	rs28652568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.3	MROH9	rs28652568-T	NR	6E-11		0.020943	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1888	chr1	170911564	170911565	rs28652568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q24.3	MROH9	rs28652568-T	NR	2E-8		0.0181833	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1888	chr1	170917800	170917801	rs926551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	MROH9	rs926551-A	NR	5E-9		0.018673	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1889	chr1	170921058	170921059	rs16863859	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	1q24.3	MROH9	rs16863859-?	NR	5E-7		0.721	[0.59-0.85]	Illumina [NR] (imputed)	N
1889	chr1	170921058	170921059	rs16863859	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	1q24.3	MROH9	rs16863859-?	NR	4E-6		0.7154	[0.57-0.86]	Illumina [NR] (imputed)	N
1889	chr1	170927095	170927096	rs6675766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	MROH9	rs6675766-T	NR	5E-9		0.0164199	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1889	chr1	170927096	170927097	rs6675768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	MROH9	rs6675768-T	NR	1E-8		0.0167234	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
1889	chr1	170958135	170958136	rs2223610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	MROH9	rs2223610-C	NR	8E-10		0.019562	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1889	chr1	170958463	170958464	rs2050151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	MROH9	rs2050151-A	NR	1E-9		0.0175537	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1889	chr1	170966011	170966012	rs28588043	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	1q24.3	NR	rs28588043-?		4E-6		0.16	unit increase	Illumina [1211988] (imputed)	N
1889	chr1	170981088	170981089	rs79729634	33625064	Cindi Z	2021-02-17	J Acquir Immune Defic Syndr	Genetic Associations with Weight Gain among South Africans who Initiated Dolutegravir- and Tenofovir-containing Regimens.	Response to dolutegravir (body weight gain)	314 Black South African individuals	NA	1q24.3	NR	rs79729634-?		2E-7				Illumina [NR] (imputed)	N
1890	chr1	171056256	171056257	rs7057813	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q24.3	MROH9, FMO3	rs7057813-A	0.6826	2E-15	(S-allylcysteine)	0.179	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1890	chr1	171061989	171061990	rs2064074	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q24.3	NR	rs2064074-A	0.528459	4E-8		0.00635281	[0.0039-0.0088] unit increase	Affymetrix [16585854] (imputed)	N
1890	chr1	171061989	171061990	rs2064074	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q24.3	NR	rs2064074-A	0.528459	6E-9		0.00761162	[0.0048-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
1890	chr1	171063261	171063262	rs12059956	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q24.3	NR	rs12059956-G	0.582996	3E-10		0.00722397	[0.0049-0.0095] unit increase	Affymetrix [16582621] (imputed)	N
1890	chr1	171063261	171063262	rs12059956	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q24.3	NR	rs12059956-G	0.582996	4E-10		0.00781374	[0.0054-0.0102] unit increase	Affymetrix [16582614] (imputed)	N
1890	chr1	171075555	171075556	rs10797877	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q24.3	NR	rs10797877-C	0.528619	1E-15		0.00646556	[0.0048-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
1890	chr1	171075555	171075556	rs10797877	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q24.3	NR	rs10797877-C	0.528619	1E-15		0.00730658	[0.0055-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
1890	chr1	171076965	171076966	rs2266782	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1q24.3	NR	rs2266782-A	0.41681999999999997	3E-11		0.0161462	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
1890	chr1	171080614	171080615	rs7061710	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	1q24.3	FMO3	rs7061710-C	0.23	8E-14	(X-11786--methylcysteine)	0.045	[0.033-0.057] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1890	chr1	171091874	171091875	rs1795240	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	1q24.3	FMO3, FMO6P	rs1795240-A	0.43	5E-8		112.27	[NR] unit decrease	Illumina [2380200] (imputed)	N
1890	chr1	171097627	171097628	rs59399957	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q24.3	FMO3, FMO6P	rs59399957-C	0.717686	3E-21	(S-methylcysteine)	0.23	[0.18-0.28] unit decrease	Illumina [13039987] (imputed)	N
1890	chr1	171128037	171128038	rs58365744	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	1q24.3		rs58365744-A	0.781443	3E-8		0.0266933	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1890	chr1	171151990	171151991	rs926268	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.3		rs926268-T	0.845	2E-12		0.1081	[0.078-0.138] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1890	chr1	171162150	171162151	rs146329779	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q24.3	NR	rs146329779-?	NR	2E-6		0.89809	[0.53-1.27] unit increase	NR [13958389] (imputed)	N
1890	chr1	171166531	171166532	rs10912537	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.3	FMO1	rs10912537-?	NR	2E-6	(niacinamide)	0.20030956	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1891	chr1	171238158	171238159	rs10912697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q24.3	NR	rs10912697-G	0.238344	2E-11		0.109174	[0.077-0.141] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1891	chr1	171238158	171238159	rs10912697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs10912697-A	0.397436	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
1891	chr1	171261192	171261193	rs6660565	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	1q24.3	FMO1	rs6660565-?	0.72	2E-6	(Dominant)	1.12	[1.07-1.18]	Affymetrix [319222]	N
1891	chr1	171287251	171287252	rs7412314	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	1q24.3	FMO4, FMO1, TOP1P1	rs7412314-?	NR	4E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
1891	chr1	171303564	171303565	rs3737926	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	1q24.3	FMO4	rs3737926-C	0.63	2E-10		2.7777777	[2-3.7]	Affymetrix [508192]	N
1892	chr1	171328082	171328083	rs6425194	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1q24.3	FMO4	rs6425194-C	0.33	2E-15	(cysteinylglycine)	0.3	[0.23-0.37] unit decrease	Illumina [7750367] (imputed)	N
1892	chr1	171328665	171328666	rs144708187	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	1q24.3	NR	rs144708187-?	NR	8E-6		0.2723	[0.15-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
1892	chr1	171348865	171348866	rs7547112	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1q24.3	FMO4	rs7547112-A	0.47	2E-16	(N-acetylmethionine sulfoxide)	0.233	[0.18-0.29] unit increase	Illumina [7750367] (imputed)	N
1892	chr1	171350208	171350209	rs115700680	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	FMO4, PRRC2C	rs115700680-T	0.01	9E-7		0.4223	[0.26-0.59] unit increase	Illumina [~ 9000000] (imputed)	N
1892	chr1	171350208	171350209	rs115700680	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	FMO4, PRRC2C	rs115700680-T	0.01	1E-6	(EA)	0.4234	[0.25-0.59] unit increase	Illumina [~ 9000000] (imputed)	N
1892	chr1	171353863	171353864	rs1018392	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1q24.3	FMO4	rs1018392-T	0.34	1E-17	(X - 21842)	0.582	[0.45-0.72] unit decrease	Illumina [7750367] (imputed)	N
1892	chr1	171354776	171354777	rs199667534	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	1q24.3	NR	rs199667534-C		4E-6		0.487	[0.27-0.7] SD units decrease	NR [10700000] (imputed)	N
1892	chr1	171356248	171356249	rs10912872	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	1q24.3	NR	rs10912872-?	NR	3E-8		0.1102	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1892	chr1	171423166	171423167	rs12727104	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1q24.3	PRRC2C	rs12727104-G	0.905	2E-8	(EA)	0.019	[0.013-0.025] unit increase	NR [12082474] (imputed)	N
1892	chr1	171423166	171423167	rs12727104	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1q24.3	FMO4, PRRC2C	rs12727104-G	0.905	1E-8		0.01614	[0.011-0.022] unit increase	Affymetrix [11709857] (imputed)	N
1892	chr1	171435541	171435542	rs16864515	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1q24.3	PRRC2C	rs16864515-A	NR	2E-8		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1892	chr1	171435541	171435542	rs16864515	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1q24.3	PRRC2C	rs16864515-A	0.0965	2E-8		0.0188738	[0.012-0.025] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1892	chr1	171435541	171435542	rs16864515	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	1q24.3	PRRC2C	rs16864515-C	NR	6E-6		1.0524281	[1.03-1.07]	Affymetrix, Illumina [8326000] (imputed)	N
1893	chr1	171443367	171443368	rs4916229	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q24.3	PRRC2C	rs4916229-C	0.904445	9E-11		0.0151299	[0.011-0.02] unit decrease	Affymetrix [12370749]	N
1893	chr1	171451421	171451422	rs116065238	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	FMO4, PRRC2C	rs116065238-A	0.0027	2E-10	(EA)	0.6235	[0.44-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
1893	chr1	171451421	171451422	rs116065238	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	FMO4, PRRC2C	rs116065238-A	0.0027	2E-10		0.6201	[0.43-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
1893	chr1	171451620	171451621	rs35041900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1q24.3		rs35041900-T	0.066891	2E-11		0.0382728	[0.027-0.049] unit increase	Illumina [13478778] (imputed)	N
1893	chr1	171451620	171451621	rs35041900	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q24.3	Intergenic	rs35041900-T	0.0914	3E-9	(MTAG)	0.0235	[0.016-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q24.3		rs34720381-T	0.08	4E-24		10.13	z score increase	Affymetrix [9061022] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q24.3		rs34720381-T	0.08	8E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q24.3	NR	rs34720381-T	0.0915	7E-12				NR [9056863] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q24.3	PRRC2C	rs34720381-C	0.908534	5E-9		0.0193223	[0.013-0.026] unit increase	Affymetrix [NR] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q24.3	NR	rs34720381-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q24.3	PRRC2C	rs34720381-T	0.0929	2E-9		0.0032	[0.0022-0.0042] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	1q24.3	PRRC2C	rs34720381-T	0.072	4E-6		0.006	[0.0035-0.0085] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.3		rs34720381-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q24.3		rs34720381-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q24.3	NA	rs34720381-T	0.0889	8E-12		0.0229	[0.016-0.029] unit increase	NR [~ 27400000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q24.3		rs34720381-T	0.0907	2E-13		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	1q24.3	PRRC2C	rs34720381-?	NR	1E-9		0.045	[0.03-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
1893	chr1	171455321	171455322	rs34720381	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	1q24.3	PRRC2C	rs34720381-?	NR	1E-8		0.0417	[0.027-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1893	chr1	171478705	171478706	rs6700683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q24.3		rs6700683-A	NR	4E-15		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q24.3		rs35039375-G	NR	2E-8		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1q24.3	PRRC2C	rs35039375-G		2E-15		0.0118	[0.0089-0.0147] unit increase	Affymetrix [13304133] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q24.3		rs35039375-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q24.3	Intergenic	rs35039375-A	0.9137	2E-10	(MTAG)	0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q24.3		rs35039375-A	0.9096	1E-13	(conditional-joint)	0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1893	chr1	171516862	171516863	rs35039375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q24.3	Intergenic	rs35039375-A	0.9096	1E-15	(MTAG)	0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1893	chr1	171525904	171525905	rs563519350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	PRRC2C	rs563519350-C	2.45999999999968E-4	6E-20		0.671075	[0.53-0.81] unit increase	Affymetrix [93095623] (imputed)	N
1893	chr1	171528415	171528416	rs235485	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	1q24.3	NR	rs235485-?	NR	8E-6		1.8545994	[1.41-2.44]	Illumina [13976150] (imputed)	N
1893	chr1	171528415	171528416	rs235485	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q24.3	PRRC2C	rs235485-G	0.2136	1E-11		6.774	NR z score decrease	Illumina [26237160] (imputed)	N
1893	chr1	171545050	171545051	rs764206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs764206-G	0.346014	4E-10				Affymetrix, Illumina [22063850] (imputed)	N
1893	chr1	171545050	171545051	rs764206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q24.3	NR	rs764206-G	0.343615	2E-11		0.013235	[0.0094-0.0171] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1893	chr1	171557599	171557600	rs2421847	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		1q24.3	PRRC2C	rs2421847-?	0.04	9E-7		0.26	unit decrease	Illumina [NR] (imputed)	N
1893	chr1	171570273	171570274	rs235887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q24.3		rs235887-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1894	chr1	171605477	171605478	rs74315329	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Glaucoma (PheCode 365)	1,190 European ancestry cases, 455,158 European ancestry controls	NA	1q24.3		rs74315329-A	0.001188	3E-13		6.53	[4.77-8.29] unit increase	NR [11842647] (imputed)	N
1894	chr1	171605477	171605478	rs74315329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	1q24.3		rs74315329-A	NR	2E-28		2.1164	[1.74-2.49] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1894	chr1	171605477	171605478	rs74315329	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1q24.3	MYOC	rs74315329-A	NR	1E-42		1.1	unit increase	Illumina [15409056] (imputed)	N
1894	chr1	171605477	171605478	rs74315329	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	1q24.3	MYOC	rs74315329-A	NR	5E-33		8.24082	[7.9-8.59]	Affymetrix, Illumina [14822926] (imputed)	N
1894	chr1	171605477	171605478	rs74315329	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	1q24.3	MYOC	rs74315329-A	0.001372	9E-16				Affymetrix [28000000] (imputed)	N
1894	chr1	171618948	171618949	rs171006	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1q24.3	MYOC	rs171006-G	0.53	6E-6		0.75	[0.42-1.08] g/day increase	Affymetrix [10353649] (imputed)	N
1894	chr1	171640018	171640019	rs115199861	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	MYOC, VAMP4	rs115199861-C	0.0046	2E-7	(EA)	0.59	[0.37-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
1894	chr1	171640018	171640019	rs115199861	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	MYOC, VAMP4	rs115199861-C	0.0046	1E-7		0.5796	[0.37-0.79] unit increase	Illumina [~ 9000000] (imputed)	N
1894	chr1	171644585	171644586	rs236907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q24.3	PFN1P1	rs236907-A	0.2044	1E-13		0.03258774	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1894	chr1	171652977	171652978	rs11799420	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal atrophy	325 European ancestry older adult individuals	NA	1q24.3	VAMP4	rs11799420-?		4E-6				Affymetrix [at least 734550] (imputed)	N
1894	chr1	171693886	171693887	rs116141391	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs116141391-C	0.983	5E-17				Affymetrix [10369434] (imputed)	N
1894	chr1	171698910	171698911	rs12567851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PA2G4	5,361 Icelandic ancestry individuals	NA	1q24.3		rs12567851-T	0.197	7E-34		0.276562	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
1895	chr1	171719768	171719769	rs11578699	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q24.3	VAMP4	rs11578699-T	0.1949	4E-9		0.0704	[0.047-0.094] unit decrease	NR [7784415] (imputed)	N
1895	chr1	171736036	171736037	rs6689125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q24.3	SCARNA20	rs6689125-A	0.1938	6E-23		0.04495841	[0.036-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1895	chr1	171738452	171738453	rs17649609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q24.3	SCARNA20	rs17649609-A	0.190596	2E-25		0.02971614	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1895	chr1	171743574	171743575	rs11803889	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Executive function (trail making test B)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	1q24.3		rs11803889-A	0.21	4E-6		23.22	[13.43-33.01] unit increase	NR [534934]	N
1895	chr1	171746952	171746953	rs10913644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PA2G4	5,361 Icelandic ancestry individuals	NA	1q24.3		rs10913644-A	0.2557	3E-45		0.292272	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
1895	chr1	171747205	171747206	rs115764752	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	VAMP4, METTL13	rs115764752-T	0.0046	7E-7		0.5409	[0.33-0.75] unit increase	Illumina [~ 9000000] (imputed)	N
1895	chr1	171747205	171747206	rs115764752	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	1q24.3	VAMP4, METTL13	rs115764752-T	0.0046	1E-6	(EA)	0.5455	[0.33-0.76] unit increase	Illumina [~ 9000000] (imputed)	N
1895	chr1	171751997	171751998	rs7512123	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.3	VAMP4	rs7512123-?	NR	8E-6	(TAG 58:8)	1.5543767	[0.87-2.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1895	chr1	171759138	171759139	rs34320898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	METTL13	rs34320898-C	0.190307	2E-32		0.033860374	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1895	chr1	171759138	171759139	rs34320898	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q24.3	NR	rs34320898-C	NR	3E-9		5.949	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1895	chr1	171775723	171775724	rs35267708	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs35267708-C	0.978	4E-12				Affymetrix [10369434] (imputed)	N
1895	chr1	171783864	171783865	rs113989831	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1q24.3	METTL13	rs113989831-G	0.08	7E-6	(African American)	0.31	0.18-0.45 unit increase	Illumina [NR] (imputed)	N
1895	chr1	171794896	171794897	rs146287327	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q24.3	Intergenic	rs146287327-G	NR	9E-7		1.06175	[0.64-1.48] unit decrease	Illumina [13520550] (imputed)	N
1895	chr1	171809210	171809211	rs3817923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q24.3		rs3817923-A	0.1133	4E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1895	chr1	171809210	171809211	rs3817923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q24.3	Intergenic	rs3817923-A	0.1133	4E-8	(MTAG)	0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1895	chr1	171814964	171814965	rs12127965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1q24.3		rs12127965-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1896	chr1	171843248	171843249	rs12145171	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	1q24.3	NR	rs12145171-C	0.4283	7E-9		0.01105	[0.0073-0.0148] unit decrease	NR [8968716] (imputed)	N
1896	chr1	171883189	171883190	rs144409768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs144409768-G	NR	3E-8		0.0434699	[0.028-0.059] unit increase	Affymetrix [323123] (imputed)	N
1896	chr1	171892404	171892405	rs2208368	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q24.3	NR	rs2208368-?	NR	4E-8	(conditional on round 2)	0.026077408	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1896	chr1	171892780	171892781	rs10798758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q24.3	DNM3	rs10798758-A	0.630567	1E-121		0.06975688	[0.064-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr1	171894591	171894592	rs6681480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	DNM3	rs6681480-G	0.630777	5E-225		0.103377216	[0.097-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr1	171894591	171894592	rs6681480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q24.3	DNM3	rs6681480-G	0.63	4E-12		0.02597416	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171908523	171908524	rs1998174	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q24.3	DNM3	rs1998174-A	0.6401	4E-9		0.02197815	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171929450	171929451	rs56125409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q24.3		rs56125409-A	0.878	6E-18				Affymetrix [10369434] (imputed)	N
1896	chr1	171929450	171929451	rs56125409	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs56125409-A	0.878	9E-27				Affymetrix [10369434] (imputed)	N
1896	chr1	171929450	171929451	rs56125409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q24.3	DNM3	rs56125409-G	0.120715	1E-24		0.03619553	[0.029-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr1	171929450	171929451	rs56125409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q24.3	DNM3	rs56125409-G	0.1233	2E-19		0.05061637	[0.04-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171934789	171934790	rs76257386	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	1q24.3	DNM3	rs76257386-?	NR	2E-7		4.408	[2.94-5.87] unit increase (adjusted)	Affymetrix [603527]	N
1896	chr1	171935227	171935228	rs78346539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	DNM3	rs78346539-G	0.016767	5E-44		0.12637499	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr1	171935227	171935228	rs78346539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q24.3	DNM3	rs78346539-G	0.0161	4E-68		0.2515199	[0.22-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171935227	171935228	rs78346539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q24.3	DNM3	rs78346539-G	0.0161	7E-45		0.2039364	[0.18-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q24.3		rs2038479-A	NR	2E-149		0.0621	[0.057-0.067] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	1q24.3		rs2038479-A	0.1872	3E-6		0.0936	[0.054-0.133] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	1q24.3		rs2038479-A	0.1769	1E-6		0.1214	[0.073-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	1q24.3		rs2038479-A	0.1791	4E-6		0.1094	[0.063-0.156] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q24.3	DNM3	rs2038479-A	0.802601	3E-81		0.055071093	[0.049-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q24.3	DNM3	rs2038479-A	0.802609	3E-477		0.17365976	[0.17-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs2038479-A	0.803165	2E-196				Affymetrix, Illumina [24588908] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q24.3	NR	rs2038479-A	0.804552	3E-166		0.063269	[0.059-0.068] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	1q24.3	NR	rs2038479-C	0.199169	1E-10		0.115422	[0.08-0.15] SD units decrease	Affymetrix, Illumina [36042313] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	1q24.3		rs2038479-?	0.195	5E-9		0.003542	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	1q24.3		rs2038479-?	0.195	5E-8		0.007745	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171939289	171939290	rs2038479	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	1q24.3		rs2038479-?	0.195	2E-6		0.00838	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171939640	171939641	rs2038480	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1q24.3	NR	rs2038480-T	0.793131	1E-9		0.0162	[0.011-0.021] unit increase	Affymetrix [23037915] (imputed)	N
1896	chr1	171939640	171939641	rs2038480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs2038480-A	0.197865	5E-630				Affymetrix, Illumina [17210439] (imputed)	N
1896	chr1	171939640	171939641	rs2038480	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q24.3	NR	rs2038480-A	0.196928	3E-624		0.128314	[0.12-0.13] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1896	chr1	171939640	171939641	rs2038480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q24.3	DNM3	rs2038480-T	0.8024	4E-265		0.1570992	[0.15-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171939640	171939641	rs2038480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q24.3	DNM3	rs2038480-T	0.8024	1E-181		0.1305419	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171942782	171942783	rs6425521	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	1q24.3		rs6425521-?	0.1966	7E-9		0.00348	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171942782	171942783	rs6425521	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	1q24.3		rs6425521-?	0.1966	3E-8		0.007861	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171942782	171942783	rs6425521	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	1q24.3		rs6425521-?	0.1966	8E-7		0.008611	unit decrease	NR [6200000] (imputed)	N
1896	chr1	171942782	171942783	rs6425521	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q24.3	DNM3	rs6425521-A	0.8012	2E-46		0.06523987	[0.056-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1896	chr1	171944241	171944242	rs6662263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1q24.3		rs6662263-G	0.799184	5E-35		0.0508464	[0.043-0.059] unit decrease	Illumina [13478928] (imputed)	N
1896	chr1	171944241	171944242	rs6662263	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q24.3	DNM3	rs6662263-?	NR	3E-16		0.04289	[0.033-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
1896	chr1	171946081	171946082	rs6425522	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs6425522-T	0.198	3E-71				Affymetrix [10369434] (imputed)	N
1896	chr1	171946081	171946082	rs6425522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	DNM3	rs6425522-C	0.801156	1E-695		0.22388959	[0.22-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1896	chr1	171946081	171946082	rs6425522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1q24.3	NR	rs6425522-T	0.202812	1E-33		0.056143	[0.047-0.065] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1896	chr1	171949749	171949750	rs10914144	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	1q24.3	DNM3	rs10914144-T	NR	2E-8		0.11	[NR] unit increase	Illumina [476395]	N
1896	chr1	171949749	171949750	rs10914144	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	1q24.3	DNM3	rs10914144-T	NR	2E-12		3.417	[2.46-4.37] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1896	chr1	171949749	171949750	rs10914144	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	1q24.3	DNM3	rs10914144-C	NR	1E-24		0.014	[0.012-0.016] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1896	chr1	171949749	171949750	rs10914144	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	1q24.3	DNM3	rs10914144-C	NR	2E-14		0.01	[0.009-0.017] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1896	chr1	171949998	171949999	rs12037133	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q24.3		rs12037133-G	0.198	3E-44				Affymetrix [10369434] (imputed)	N
1897	chr1	171970897	171970898	rs74976159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs74976159-T	NR	5E-8		0.0380848	[0.024-0.052] unit increase	Affymetrix [323123] (imputed)	N
1897	chr1	171980158	171980159	rs61805853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs61805853-T	NR	5E-9		0.0211593	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1897	chr1	171992566	171992567	rs10910929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs10910929-G	NR	4E-13		0.0226134	[0.017-0.029] unit increase	Affymetrix [323123] (imputed)	N
1897	chr1	171996623	171996624	rs11497367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q24.3	DNM3	rs11497367-A	0.042089	5E-17		0.047138393	[0.036-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1897	chr1	172008562	172008563	rs61805855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs61805855-G	NR	4E-11		0.0287293	[0.02-0.037] unit increase	Affymetrix [323123] (imputed)	N
1897	chr1	172025642	172025643	rs9659615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs9659615-A	NR	2E-8		0.01734	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1897	chr1	172039454	172039455	rs4641331	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	1q24.3	NR	rs4641331-G	0.9	4E-6		1.4285715	[NR]	Illumina [747089]	N
1897	chr1	172041779	172041780	rs12117623	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	1q24.3	DNM3	rs12117623-C	0.5306	1E-6		1.312336	[1.18-1.46]	Illumina [7521072] (imputed)	N
1897	chr1	172053286	172053287	rs17346452	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q24.3	DNM3	rs17346452-T	0.73	1E-23		0.04	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1897	chr1	172055498	172055499	rs78795075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q24.3	DNM3	rs78795075-C	0.017378	1E-21		0.08431484	[0.067-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1897	chr1	172058885	172058886	rs186897198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.3		rs186897198-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1897	chr1	172083092	172083093	rs17346473	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3	rs17346473-A	0.7233	4E-6	(EA,men)	0.0264	[0.015-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1897	chr1	172083092	172083093	rs17346473	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3	rs17346473-A	0.7233	3E-14	(EA)	0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1897	chr1	172083092	172083093	rs17346473	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3	rs17346473-A	0.7233	2E-10	(EA, women)	0.0322	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1897	chr1	172083880	172083881	rs6694089	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q24.3	DNM3	rs6694089-A	0.279	4E-33		0.039	[0.033-0.045] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1897	chr1	172087025	172087026	rs10158753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs10158753-A	NR	7E-10		0.01887	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1897	chr1	172095225	172095226	rs733190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs733190-C	NR	3E-16		0.0250569	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
1897	chr1	172095225	172095226	rs733190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q24.3	NR	rs733190-T	0.525563	2E-9		0.00773479	[0.0052-0.0103] unit increase	Affymetrix [16578495] (imputed)	N
1898	chr1	172100595	172100596	rs2421986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	DNM3	rs2421986-T	0.17029	1E-19		0.029460466	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1898	chr1	172105161	172105162	rs17277008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs17277008-C	NR	2E-18		0.0263229	[0.02-0.032] unit increase	Affymetrix [321016] (imputed)	N
1898	chr1	172105161	172105162	rs17277008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs17277008-C	NR	4E-22		0.0318149	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
1898	chr1	172113327	172113328	rs34952786	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q24.3	DNM3OS, DNM3	rs34952786-T	0.3411	2E-7		0.0383	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1898	chr1	172122600	172122601	rs17361789	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	1q24.3	DNM3	rs17361789-G	0.32	5E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1898	chr1	172127697	172127697	rs35515222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs35515222-AT	NR	2E-18		0.0247352	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
1898	chr1	172133447	172133448	rs615091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q24.3		rs615091-G	NR	2E-11		0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1898	chr1	172134468	172134469	rs537444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q24.3		rs537444-G	NR	1E-17		0.0148	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1898	chr1	172137018	172137019	rs17361886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q24.3		rs17361886-A	NR	7E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1898	chr1	172137118	172137119	rs672740	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q24.3	DNM3	rs672740-T	0.519265	8E-14		0.0151798	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1898	chr1	172137133	172137134	rs17277127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q24.3	DNM3	rs17277127-T	0.311809	2E-14		0.018332152	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1898	chr1	172137133	172137134	rs17277127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q24.3		rs17277127-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1898	chr1	172140547	172140548	rs554019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q24.3		rs554019-T	NR	3E-17		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1898	chr1	172140547	172140548	rs554019	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q24.3	DNM3	rs554019-T		7E-19		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1898	chr1	172140547	172140548	rs554019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q24.3	DNM3	rs554019-T	0.4168	4E-9		0.02124103	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1898	chr1	172141402	172141403	rs12125882	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q24.3	NR	rs12125882-A	0.579284	4E-8		0.0168277	[0.011-0.023] unit increase	Affymetrix [16577313] (imputed)	N
1898	chr1	172152201	172152202	rs484686	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q24.3	Intergenic	rs484686-?		8E-6		1.3	[1.16-1.46]	Illumina [7645193] (imputed)	N
1898	chr1	172163707	172163708	rs112744418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q24.3	NR	rs112744418-A	0.312497	1E-20		0.018426	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1898	chr1	172163707	172163708	rs112744418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q24.3	NR	rs112744418-A	0.31275	1E-24		0.020346	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1898	chr1	172163707	172163708	rs112744418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q24.3	NR	rs112744418-A	0.312704	9E-26		0.020818	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1898	chr1	172166209	172166210	rs4394690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs4394690-C	NR	7E-27		0.0353656	[0.029-0.042] unit increase	Affymetrix [323123] (imputed)	N
1898	chr1	172167225	172167226	rs2209098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q24.3	DNM3	rs2209098-C	0.311085	4E-19		0.021332135	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1898	chr1	172167225	172167226	rs2209098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q24.3	DNM3	rs2209098-C	0.311118	2E-19		0.021511815	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1898	chr1	172167225	172167226	rs2209098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q24.3		rs2209098-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1898	chr1	172174595	172174596	rs7535241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs7535241-A	0.249309	5E-18				Affymetrix, Illumina [24332387] (imputed)	N
1898	chr1	172174595	172174596	rs7535241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs7535241-A	0.251112	4E-22				Affymetrix, Illumina [24653286] (imputed)	N
1898	chr1	172174595	172174596	rs7535241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs7535241-A	0.253128	1E-22				Affymetrix, Illumina [24558453] (imputed)	N
1898	chr1	172175589	172175590	rs55935473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs55935473-G	NR	9E-24		0.0304162	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1898	chr1	172176992	172176993	rs589245	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs589245-A	0.574	9E-15				Affymetrix [10369434] (imputed)	N
1898	chr1	172186728	172186729	rs633995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.3	NR	rs633995-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1898	chr1	172186728	172186729	rs633995	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1q24.3	NR	rs633995-A	0.4251	2E-9		0.0351	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1898	chr1	172189059	172189059	rs34298791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs34298791-GAA	NR	4E-19		0.0334096	[0.026-0.041] unit increase	Affymetrix [323123] (imputed)	N
1898	chr1	172189888	172189889	rs678962	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q24.3	DNM3	rs678962-G	0.22	3E-8		5.4	[3.44-7.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1898	chr1	172191393	172191394	rs477289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs477289-C	NR	1E-19		0.0294901	[0.023-0.036] unit increase	Affymetrix [321016] (imputed)	N
1898	chr1	172193819	172193820	rs12410416	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q24.3	NR	rs12410416-?	NR	7E-8		0.04195971	[0.027-0.057] unit increase	Illumina [34656550] (imputed)	N
1898	chr1	172193819	172193820	rs12410416	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q24.3	DNM3	rs12410416-T	0.69	2E-10		0.028	[0.016-0.04] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1898	chr1	172198219	172198220	rs12063247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.3	NR	rs12063247-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1898	chr1	172199572	172199573	rs479336	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	1q24.3	DNM3	rs479336-T	0.74	9E-15		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1898	chr1	172200654	172200655	rs609702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q24.3		rs609702-A	0.319876	4E-14		0.0161848	[0.012-0.02] unit increase	Illumina [13479295] (imputed)	N
1898	chr1	172200654	172200655	rs609702	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q24.3	DNM3	rs609702-?	NR	1E-17		0.025947371	[0.02-0.032] unit increase	Illumina [27896057] (imputed)	N
1898	chr1	172204892	172204893	rs28600859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q24.3	DNM3	rs28600859-A	NR	2E-8		0.0210919	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1898	chr1	172208619	172208620	rs2289635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.3		rs2289635-?	NR	4E-124				NR [~ 8900000] (imputed)	N
1898	chr1	172209746	172209747	rs10911356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q24.3		rs10911356-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1898	chr1	172213403	172213404	rs10458358	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.3		rs10458358-?	NR	6E-37		0.030854	[0.026-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
1898	chr1	172219994	172219995	rs12075079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q24.3	NR	rs12075079-?	NR	3E-7		0.04112592	[0.025-0.057] unit increase	Illumina [34656550] (imputed)	N
1898	chr1	172219994	172219995	rs12075079	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q24.3	DNM3	rs12075079-G	0.21	7E-12		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1898	chr1	172227010	172227011	rs12409899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q24.3		rs12409899-G	NR	1E-74		0.0368	[0.033-0.041] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1898	chr1	172227010	172227011	rs12409899	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q24.3	DNM3	rs12409899-C	0.7842	1E-7		0.0444	[0.028-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1899	chr1	172230228	172230229	rs12041600	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.3		rs12041600-?	NR	2E-43		0.0275149	[0.023-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1899	chr1	172230228	172230229	rs12041600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q24.3	DNM3	rs12041600-G	0.52086	5E-11	(women)	0.02917	[0.02-0.038] unit increase	NR [17166351] (imputed)	N
1899	chr1	172230228	172230229	rs12041600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q24.3	DNM3	rs12041600-G	0.520643	1E-15		0.0254858	[0.019-0.032] unit increase	NR [17166351] (imputed)	N
1899	chr1	172230228	172230229	rs12041600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q24.3	DNM3	rs12041600-G	0.520395	1E-6	(men)	0.0239793	[0.014-0.034] unit increase	NR [17166351] (imputed)	N
1899	chr1	172230779	172230780	rs2422073	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.3	NR	rs2422073-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1899	chr1	172232176	172232177	rs12737669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q24.3		rs12737669-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1899	chr1	172236266	172236267	rs56682471	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q24.3	DNM3	rs56682471-A	0.783675	3E-16		0.0201441	[0.015-0.025] unit decrease	NR [13737936] (imputed)	N
1899	chr1	172241250	172241251	rs2421992	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q24.3	DNM3	rs2421992-?	NR	5E-8	(Conditioned on rs17346452)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1899	chr1	172254192	172254193	rs2586392	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.3		rs2586392-?	NR	4E-32		0.027327	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1899	chr1	172280452	172280452	rs145764789	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.3		rs145764789-?	NR	6E-35		0.0301717	[0.025-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1899	chr1	172292204	172292205	rs6694387	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1q24.3	NR	rs6694387-T	0.4476	2E-8		0.0329	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1899	chr1	172292788	172292789	rs6682381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs6682381-T	NR	4E-22		0.0302707	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1899	chr1	172302543	172302544	rs911713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs911713-C	NR	2E-14		0.0216453	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172302543	172302544	rs911713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3	rs911713-C	NR	9E-15		0.0218735	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172302543	172302544	rs911713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3	rs911713-C	NR	4E-9		0.0167116	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1899	chr1	172302543	172302544	rs911713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	DNM3	rs911713-C	NR	4E-8		0.015644	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
1899	chr1	172303508	172303509	rs10911603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs10911603-C	NR	1E-15		0.0366152	[0.028-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1899	chr1	172312768	172312769	rs9425291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs9425291-A	NR	4E-10		0.0196545	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1899	chr1	172312768	172312769	rs9425291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q24.3	DNM3	rs9425291-A	NR	8E-11		0.020421	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
1899	chr1	172318030	172318031	rs7534393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q24.3		rs7534393-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1899	chr1	172319248	172319249	rs10797984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3	rs10797984-A	NR	8E-11		0.0321806	[0.022-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1899	chr1	172321640	172321641	rs17369011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3	rs17369011-T	NR	6E-18		0.0299044	[0.023-0.037] unit increase	Affymetrix [321114] (imputed)	N
1899	chr1	172323133	172323134	rs17277932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3	rs17277932-A	NR	5E-27		0.0432388	[0.035-0.051] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172323133	172323134	rs17277932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3	rs17277932-A	NR	1E-27		0.0438593	[0.036-0.052] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172323133	172323134	rs17277932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3	rs17277932-A	NR	3E-16		0.0340936	[0.026-0.042] unit decrease	Affymetrix [321788] (imputed)	N
1899	chr1	172323133	172323134	rs17277932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	DNM3	rs17277932-A	NR	4E-13		0.0295337	[0.022-0.038] unit increase	Affymetrix [321169] (imputed)	N
1899	chr1	172323133	172323134	rs17277932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q24.3		rs17277932-?	NR	5E-15		0.0229655	[0.017-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1899	chr1	172330436	172330437	rs9425573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3	rs9425573-T	NR	2E-18		0.0264117	[0.021-0.032] unit increase	Affymetrix [321114] (imputed)	N
1899	chr1	172330436	172330437	rs9425573	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.3	NR	rs9425573-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q24.3	NR	rs1894633-G	0.3337	2E-6	(EA)	0.0312	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	PIGC, DNM3	rs1894633-G	0.33919999999999995	6E-14	(women)	0.0387	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-G	0.33919999999999995	5E-16		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-G	0.33919999999999995	5E-13		0.0346	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-G	0.33819999999999995	4E-12	(women)	0.0427	[0.031-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-G	0.33819999999999995	4E-12	(women)	0.0427	[0.031-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-?	0.33919999999999995	5E-13	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs1894633-?	0.33919999999999995	1E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-G	0.35209999999999997	1E-11		0.0255	[0.018-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-G	0.3388	6E-11	(EA)	0.0261	[0.018-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-G	0.3388	2E-10	(EA, women)	0.0332	[0.023-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3	rs1894633-G	0.35209999999999997	5E-10		0.0271	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3	rs1894633-G	0.3388	2E-9	(EA)	0.0274	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3	rs1894633-G	0.3378	2E-8	(EA,women)	0.0327	[0.021-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-?	0.35209999999999997	3E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-?	0.3388	6E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172331058	172331059	rs1894633	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3	rs1894633-?	0.3388	2E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-T	0.4363	5E-16	(EA)	0.032	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-T	0.4363	3E-14	(EA, women)	0.0387	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-T	0.4363	8E-14	(EA)	0.0339	[0.025-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-T	0.436	3E-12	(EA, women)	0.0402	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-?	0.4363	6E-16	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172333247	172333248	rs2001129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q24.3	DNM3, PIGC	rs2001129-?	0.4363	3E-13	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1899	chr1	172341974	172341975	rs7517737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q24.3	PIGC, DNM3	rs7517737-A	0.566625	2E-9		0.013339029	[0.009-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr1	172346547	172346548	rs1011731	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q24.3	DNM3	rs1011731-A	0.5961	1E-9		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1899	chr1	172346547	172346548	rs1011731	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	1q24.3	NR	rs1011731-A	0.57	8E-9		0.018	unit decrease	Illumina [242289]	N
1899	chr1	172346547	172346548	rs1011731	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	1q24.3	DNM3	rs1011731-A	NR	1E-11		0.013541268	[0.0096-0.0175] unit increase	Illumina [242289]	N
1899	chr1	172346547	172346548	rs1011731	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	1q24.3	NR	rs1011731-A	0.57	3E-8		0.017	unit increase	Illumina [242289]	N
1899	chr1	172346547	172346548	rs1011731	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs1011731-A	0.5729	7E-8	(EA, women)	0.0235	[0.015-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172346547	172346548	rs1011731	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs1011731-A	0.5729	1E-8	(EA)	0.0191	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172346547	172346548	rs1011731	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	1q24.3	PIGC, DNM3	rs1011731-G	0.43	1E-17		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	2E-29		0.0355605	[0.029-0.042] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	2E-29		0.0356895	[0.029-0.042] unit increase	Affymetrix [319769] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	2E-12		0.0224215	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	7E-24		0.0331066	[0.027-0.04] unit decrease	Affymetrix [321788] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	7E-15		0.0245378	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12138803-T	NR	5E-11		0.0210688	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q24.3	NR	rs12138803-C	0.730211	2E-10		0.00605624	[0.0042-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q24.3	NR	rs12138803-C	0.730533	1E-9		0.00856942	[0.0059-0.0113] unit increase	Affymetrix [16585854] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q24.3	NR	rs12138803-C	0.730211	1E-7		0.00558389	[0.0035-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q24.3	NR	rs12138803-C	0.730533	4E-7		0.00832136	[0.0052-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.3	NR	rs12138803-?	NR	2E-32				Affymetrix [~ 8270000] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q24.3	NR	rs12138803-T	0.2018	1E-38		0.0254	[0.022-0.029] unit increase	NR [~ 27400000] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q24.3	NA	rs12138803-T	0.2001	7E-25		0.0198	[0.016-0.024] unit increase	NR [~ 27400000] (imputed)	N
1899	chr1	172348822	172348823	rs12138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q24.3	NR	rs12138803-T	0.2001	7E-25		0.0198	[0.016-0.024] unit increase	NR [~ 27400000] (imputed)	N
1899	chr1	172348950	172348951	rs12077769	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	1q24.3	DNM3	rs12077769-A	NR	4E-6		4.631	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1899	chr1	172349245	172349246	rs7519429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q24.3	NR	rs7519429-A	NR	1E-10		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1899	chr1	172349245	172349246	rs7519429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q24.3	NR	rs7519429-A	0.625	2E-9	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1899	chr1	172349245	172349246	rs7519429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q24.3	NR	rs7519429-A	NR	6E-7		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1899	chr1	172350206	172350207	rs768019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q24.3		rs768019-G	NR	1E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1899	chr1	172350206	172350207	rs768019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs768019-A	NR	4E-14		0.0217876	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
1899	chr1	172352989	172352990	rs714515	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q24.3	NR	rs714515-G	0.44	1E-56		0.028	[0.024-0.032] unit increase	Affymetrix [2446094] (imputed)	N
1899	chr1	172352989	172352990	rs714515	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q24.3	NR	rs714515-G	0.44	5E-8				Affymetrix [2446094] (imputed)	N
1899	chr1	172352989	172352990	rs714515	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.3	DNM3, PIGC	rs714515-A	0.5576	9E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.3	DNM3, PIGC	rs714515-A	0.5576	7E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.3	DNM3, PIGC	rs714515-A	0.5576	9E-15		0.0273	[0.02-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q24.3	DNM3, PIGC	rs714515-A	0.5576	1E-11	(women)	0.0314	[0.022-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q24.3	NR	rs714515-A	0.573760826852533	6E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q24.3	NR	rs714515-A	0.573760826852533	3E-16		0.02717696	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.4369	1E-15		0.0272	[0.021-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.4352	9E-11	(women)	0.029	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.4334	3E-7	(men)	0.025	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.43	9E-7	(EA, men)	0.0247	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.4285	4E-15	(EA)	0.027	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172352989	172352990	rs714515	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q24.3	DNM3, PIGC	rs714515-G	0.4271	2E-10	(EA, women)	0.0289	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1899	chr1	172353310	172353311	rs10797996	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q24.3	DNM3	rs10797996-C	0.433192	5E-12		0.0138307	[0.0099-0.0178] unit increase	Affymetrix [NR] (imputed)	N
1899	chr1	172353470	172353471	rs12132562	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	1q24.3	DNM3	rs12132562-?	NR	4E-7	(AA)	8.5	[5.17-11.83] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1899	chr1	172355275	172355276	rs9425589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q24.3		rs9425589-A	NR	4E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1899	chr1	172355840	172355841	rs17369123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.3		rs17369123-?	NR	8E-36				NR [~ 8900000] (imputed)	N
1899	chr1	172357440	172357441	rs12405515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12405515-G	NR	1E-31		0.0344925	[0.029-0.04] unit decrease	Affymetrix [321788] (imputed)	N
1899	chr1	172357440	172357441	rs12405515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs12405515-G	NR	4E-22		0.0273946	[0.022-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1899	chr1	172357440	172357441	rs12405515	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q24.3	DNM3	rs12405515-T	0.56	1E-9		0.165	[0.11-0.22] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1899	chr1	172357440	172357441	rs12405515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q24.3	DNM3	rs12405515-G		1E-6		0.189	unit increase	Affymetrix [at least 2696785] (imputed)	N
1899	chr1	172357440	172357441	rs12405515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q24.3	DNM3	rs12405515-G		1E-12		0.17	unit increase	Affymetrix [at least 2696785] (imputed)	N
1899	chr1	172358166	172358167	rs2301453	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	1q24.3	NR	rs2301453-?	NR	2E-6				NR [1800000]	N
1900	chr1	172361031	172361032	rs4916253	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q24.3	NR	rs4916253-G	0.4311	3E-9		0.0274	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1900	chr1	172361515	172361516	rs2001127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs2001127-C	NR	3E-38		0.0366363	[0.031-0.042] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172361515	172361516	rs2001127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs2001127-C	NR	2E-38		0.0366897	[0.031-0.042] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172362744	172362744	rs547043321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q24.3	NR	rs547043321-AAAG	NR	3E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix [9000000] (imputed)	N
1900	chr1	172363487	172363488	rs1052256	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q24.3	DNM3	rs1052256-A	0.8118	3E-20		0.0219	[0.017-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
1900	chr1	172363523	172363524	rs10752944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q24.3		rs10752944-?	NR	6E-46				NR [~ 8900000] (imputed)	N
1900	chr1	172364711	172364712	rs6700575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs6700575-G	NR	7E-9		0.0249182	[0.016-0.033] unit increase	Affymetrix [323858] (imputed)	N
1900	chr1	172364711	172364712	rs6700575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs6700575-G	NR	7E-10		0.0238412	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr1	172366805	172366806	rs9286854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs9286854-A	NR	4E-8		0.0169059	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1900	chr1	172367061	172367062	rs10489284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs10489284-G	NR	2E-8		0.0240239	[0.016-0.032] unit increase	Affymetrix [127266] (imputed)	N
1900	chr1	172367061	172367062	rs10489284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs10489284-G	NR	6E-10		0.0260054	[0.018-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1900	chr1	172368309	172368310	rs7546252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs7546252-A	NR	2E-15		0.0256197	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1900	chr1	172368309	172368310	rs7546252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7546252-A	NR	2E-14		0.0220312	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
1900	chr1	172368309	172368310	rs7546252	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q24.3	NR	rs7546252-G	0.5727	2E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1900	chr1	172369346	172369347	rs9425596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs9425596-T	NR	4E-8		0.0157042	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
1900	chr1	172371150	172371151	rs9425304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q24.3		rs9425304-C	0.601	1E-10				Affymetrix [10369434] (imputed)	N
1900	chr1	172371150	172371151	rs9425304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs9425304-A	NR	1E-11		0.0196255	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1900	chr1	172372259	172372260	rs7516301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7516301-T	NR	9E-11		0.0182986	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172372259	172372260	rs7516301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7516301-T	NR	2E-11		0.018961	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172374743	172374744	rs75413588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs75413588-A	NR	4E-9		0.0275663	[0.018-0.037] unit increase	Affymetrix [321016] (imputed)	N
1900	chr1	172376358	172376359	rs201335118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs201335118-CA	NR	5E-10		0.0289271	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172376358	172376359	rs201335118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs201335118-CA	NR	1E-10		0.0298906	[0.021-0.039] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172377744	172377745	rs16844417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs16844417-A	NR	1E-13		0.0317289	[0.023-0.04] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172377744	172377745	rs16844417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs16844417-A	NR	7E-14		0.0320126	[0.024-0.04] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172377744	172377745	rs16844417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs16844417-A	NR	2E-8		0.024228	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
1900	chr1	172377744	172377745	rs16844417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q24.3	NR	rs16844417-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1900	chr1	172380925	172380926	rs76166162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs76166162-A	NR	5E-16		0.0463521	[0.035-0.058] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172380925	172380926	rs76166162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs76166162-A	NR	5E-16		0.0464258	[0.035-0.058] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172380925	172380926	rs76166162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs76166162-A	NR	4E-9		0.0340048	[0.023-0.045] unit increase	Affymetrix [321114] (imputed)	N
1900	chr1	172380925	172380926	rs76166162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs76166162-A	NR	3E-10		0.0374513	[0.026-0.049] unit decrease	Affymetrix [321788] (imputed)	N
1900	chr1	172380925	172380926	rs76166162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.3	NR	rs76166162-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1900	chr1	172381283	172381284	rs17278379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs17278379-C	NR	7E-11		0.0288988	[0.02-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7528296-C	NR	3E-18		0.0252143	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7528296-C	NR	3E-19		0.0258892	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7528296-C	NR	1E-12		0.0213097	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q24.3	DNM3, PIGC	rs7528296-C	NR	2E-8		0.0185087	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	DNM3, PIGC	rs7528296-C	NR	8E-9		0.0168953	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1900	chr1	172381382	172381383	rs7528296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q24.3	DNM3	rs7528296-C	0.386846	1E-15		0.018554658	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1900	chr1	172382964	172382965	rs10798005	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q24.3		rs10798005-A	0.1456	4E-13		0.1135	[0.083-0.144] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1900	chr1	172388777	172388778	rs9425311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MINPP1	5,353 Icelandic ancestry individuals	NA	1q24.3		rs9425311-T	0.4874	6E-12		0.125034	[0.089-0.161] unit decrease	Illumina [7506463] (imputed)	N
1900	chr1	172394287	172394288	rs9425314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q24.3	PIGC, C1orf105	rs9425314-C	NR	6E-9		0.0240108	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1900	chr1	172395511	172395512	rs9425315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs9425315-C	NR	3E-13		0.0239942	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1900	chr1	172395511	172395512	rs9425315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs9425315-C	NR	6E-16		0.0274622	[0.021-0.034] unit decrease	Affymetrix [321788] (imputed)	N
1900	chr1	172395511	172395512	rs9425315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs9425315-C	NR	5E-9		0.01906	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr1	172395511	172395512	rs9425315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs9425315-C	NR	5E-12		0.0228008	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
1900	chr1	172402126	172402127	rs2422141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q24.3	PIGC, C1orf105	rs2422141-G	0.488066	4E-43		0.030257525	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1900	chr1	172402126	172402127	rs2422141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q24.3	PIGC, C1orf105	rs2422141-G	0.488023	1E-107		0.048946075	[0.045-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1900	chr1	172410530	172410531	rs183856666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs183856666-T	NR	3E-9		0.0296489	[0.02-0.039] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172410530	172410531	rs183856666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	PIGC, C1orf105	rs183856666-T	NR	7E-10		0.0307146	[0.021-0.04] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172410530	172410531	rs183856666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.3	NR	rs183856666-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1900	chr1	172410530	172410531	rs183856666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q24.3		rs183856666-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1900	chr1	172410966	172410967	rs1063412	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q24.3	PIGC	rs1063412-G		3E-8		0.012	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1900	chr1	172415350	172415351	rs200139225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	C1orf105	rs200139225-G	NR	1E-8		0.0162766	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1900	chr1	172415351	172415352	rs66533066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q24.3	C1orf105	rs66533066-G	0.496899	2E-22		0.021674475	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1900	chr1	172415351	172415352	rs66533066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q24.3	C1orf105	rs66533066-G	0.496904	1E-25		0.023283938	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1900	chr1	172415351	172415352	rs66533066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q24.3	C1orf105	rs66533066-G	0.496925	7E-11		0.014444319	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1900	chr1	172415450	172415451	rs2269615	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q24.3	C1orf105	rs2269615-T	0.555	3E-15	(Voltage-dependent calcium channel subunit alpha-2/delta-3, CACNA2D3.8885.6.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
1900	chr1	172416859	172416860	rs7515895	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-245 sp000435175 abundance in stool	5,959 Finnish ancestry individuals	NA	1q24.3		rs7515895-C	0.263388	2E-9		0.107526	[0.072-0.143] unit increase	Illumina [7980478] (imputed)	N
1900	chr1	172416859	172416860	rs7515895	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-245 abundance in stool	5,959 Finnish ancestry individuals	NA	1q24.3		rs7515895-C	0.263388	1E-9		0.12138	[0.082-0.161] unit increase	Illumina [7980478] (imputed)	N
1900	chr1	172416859	172416860	rs7515895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q24.3	C1orf105	rs7515895-C	NR	4E-20		0.0309393	[0.024-0.038] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172416859	172416860	rs7515895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q24.3	C1orf105	rs7515895-C	NR	5E-21		0.0317017	[0.025-0.038] unit increase	Affymetrix [319769] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q24.3		rs2285170-G	NR	7E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q24.3	C1orf105	rs2285170-G	0.497229	9E-48		0.03215871	[0.028-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q24.3	C1orf105	rs2285170-G	0.497115	3E-12		0.0153919	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q24.3	C1orf105	rs2285170-G	0.497115	2E-46		0.031997923	[0.028-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs2285170-C	0.511396	5E-61				Affymetrix, Illumina [22063850] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q24.3	NR	rs2285170-C	0.50288	7E-65		0.031984	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs2285170-G	0.516913	4E-11				Affymetrix, Illumina [21126107] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q24.3	NR	rs2285170-G	0.496538	5E-11		0.013132	[0.0092-0.0171] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1900	chr1	172425528	172425529	rs2285170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q24.3		rs2285170-?	NR	9E-49				NR [~ 8900000] (imputed)	N
1900	chr1	172426997	172426998	rs6691993	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q24.3	C1orf105	rs6691993-G	NR	7E-13		0.0286035	[0.021-0.036] unit increase	Affymetrix [16832071] (imputed)	N
1900	chr1	172432207	172432208	rs6660798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q24.3	C1orf105	rs6660798-T	NR	6E-12		0.0232575	[0.017-0.03] unit increase	Affymetrix [321114] (imputed)	N
1900	chr1	172434811	172434812	rs2901656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q24.3	C1orf105	rs2901656-T	0.4926	1E-19		0.03196659	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1900	chr1	172434811	172434812	rs2901656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q24.3	C1orf105	rs2901656-T	0.4929	1E-25		0.03751499	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1900	chr1	172437591	172437592	rs1129942	30389748	Emdin CA	2018-11-02	Diabetes	DNA Sequence Variation in ACVR1C Encoding the Activin Receptor-Like Kinase 7 Influences Body Fat Distribution and Protects Against Type 2 Diabetes.	Waist-to-hip ratio adjusted for BMI	335,660 European ancestry individuals, 69,909 individuals	210,088 European ancestry individuals, 14,371 individuals	1q24.3	C1orf105	rs1129942-G	NR	2E-14		0.021	[0.015-0.027] unit increase	Illumina [614042]	N
1900	chr1	172452086	172452087	rs2032528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q24.3	C1orf105	rs2032528-A	NR	9E-16		0.0248935	[0.019-0.031] unit decrease	Affymetrix [321788] (imputed)	N
1900	chr1	172452086	172452087	rs2032528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q24.3	C1orf105	rs2032528-A	NR	4E-9		0.0199849	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1900	chr1	172452086	172452087	rs2032528	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q24.3	NR	rs2032528-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1901	chr1	172518895	172518896	rs12758548	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	1q24.3	SUCO, LOC105371616	rs12758548-T	0.2487	5E-6		0.08664	[NR] unit decrease	Illumina [658884]	N
1901	chr1	172541267	172541268	rs188306310	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q24.3	SUCO, FASLG, C1orf105, PIGC	rs188306310-A	NR	3E-6	(daytime resting)	1.736	[1.01-2.46] unit decrease	Affymetrix [7141204] (imputed)	N
1901	chr1	172555772	172555773	rs114523689	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Demequinaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1q24.3		rs114523689-G	0.0311974	4E-8		0.0731871	[0.047-0.099] unit decrease	Illumina [7980478] (imputed)	N
1901	chr1	172555772	172555773	rs114523689	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Demequina abundance in stool	5,959 Finnish ancestry individuals	NA	1q24.3		rs114523689-G	0.0311974	4E-8		0.0736704	[0.047-0.1] unit decrease	Illumina [7980478] (imputed)	N
1901	chr1	172565669	172565670	rs7542631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q24.3		rs7542631-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1901	chr1	172595623	172595624	rs9970543	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q24.3	NR	rs9970543-T	0.29	6E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1902	chr1	172626210	172626211	rs867865671	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	1q24.3		rs867865671-G	NR	3E-8				Illumina [1084750]	N
1902	chr1	172639718	172639719	rs75084216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q24.3		rs75084216-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1902	chr1	172658922	172658923	rs1102713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs1102713-C	0.426687	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1902	chr1	172658922	172658923	rs1102713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q24.3	NR	rs1102713-A	0.175407	5E-16		0.166763	[0.13-0.21] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1902	chr1	172658922	172658923	rs1102713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs1102713-C	0.44346	6E-15				Affymetrix, Illumina [23114412] (imputed)	N
1902	chr1	172658922	172658923	rs1102713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q24.3	NR	rs1102713-A	0.173225	1E-16		0.183315	[0.14-0.23] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1902	chr1	172668339	172668340	rs859667	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q24.3		rs859667-T	0.8909	2E-10		0.1651	[0.11-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1902	chr1	172674775	172674776	rs10912267	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	1q24.3	intergenic	rs10912267-?		1E-11		1.1871982		Illumina [252970]	N
1902	chr1	172674775	172674776	rs10912267	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	1q24.3	FASLG	rs10912267-A	NA	4E-9				Illumina [252970]	N
1902	chr1	172675096	172675097	rs12118303	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	1q24.3	FASLG	rs12118303-C	0.17	3E-10		1.12		Illumina, Perlegen [9113515] (imputed)	N
1902	chr1	172675524	172675525	rs10798176	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1q24.3	FASLG	rs10798176-?	NR	2E-6		1.1494253	[1.09-1.22]	Illumina [at least 5000000] (imputed)	N
1902	chr1	172681030	172681031	rs12068671	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q24.3	FASLG	rs12068671-?	NR	7E-8		1.1363636	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
1902	chr1	172681030	172681031	rs12068671	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1q24.3	FASLG	rs12068671-?	0.815	1E-10		1.1627907		Illumina [139553]	N
1902	chr1	172700867	172700868	rs1102705	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q24.3	FASLG, TNFSF18	rs1102705-G	0.075	1E-7		1.072	[1.05-1.1]	Affymetrix [9000000] (imputed)	N
1902	chr1	172700867	172700868	rs1102705	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q24.3	FASLG, TNFSF18	rs1102705-G	NR	1E-7		1.066	[1.04-1.09]	Affymetrix [9000000] (imputed)	N
1902	chr1	172700867	172700868	rs1102705	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q24.3	FASLG, TNFSF18	rs1102705-G	0.11	3E-10		1.058	[1.04-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1902	chr1	172710999	172711000	rs859637	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q24.3	TNFSF18, TNFSF4, FASLG	rs859637-A	0.49	2E-6		1.1	[1.06-1.14]	Illumina [292387]	N
1902	chr1	172715701	172715702	rs78037977	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q24.3	FASLG	rs78037977-G	0.124	2E-9		0.884		Illumina [715631] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q24.3	FASLG	rs78037977-G	0.124	2E-9		0.884		Illumina [715631] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q24.3	FASLG, TNFSF18	rs78037977-A	0.879	2E-12		0.046	[0.034-0.058] unit decrease	NR [NR] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q24.3	FASLG, TNFSF18	rs78037977-A	0.879	1E-11		0.044	[0.032-0.056] unit decrease	NR [7647814] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q24.3	NR	rs78037977-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	1q24.3	FASLG, TNFSF18	rs78037977-A	0.879	5E-6		1.074	[1.04-1.11]	Affymetrix [9000000] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q24.3	FASLG, TNFSF18	rs78037977-?	NR	6E-13		1.086	[1.06-1.11]	Affymetrix [9000000] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	1q24.3	FASLG	rs78037977-A	0.87	9E-10		1.2345679	[1.15-1.32]	Affymetrix, Illumina [16531985] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q24.3	Intergenic	rs78037977-G	NR	1E-6		0.039546	[0.024-0.056] unit decrease	Illumina [13520550] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q24.3	FASLG, TNFSF18	rs78037977-G	0.123	4E-8		0.0315656	[0.02-0.043] unit increase	Illumina [13520550] (imputed)	N
1902	chr1	172715701	172715702	rs78037977	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	1q24.3	FASLG	rs78037977-G	0.1316	7E-17		1.322	[1.24-1.41]	Illumina [8966411] (imputed)	N
1902	chr1	172734597	172734598	rs859725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q24.3	NR	rs859725-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1902	chr1	172745283	172745284	rs859722	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q24.3	C1orf9	rs859722-?	NR	6E-6	(alpha glycerophosphocholine)	0.16157739	[0.091-0.232] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1903	chr1	172760121	172760122	rs859715	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	1q24.3	FASLG	rs859715-?	NR	3E-8		0.1073	unit decrease	Illumina [up to 143074]	N
1903	chr1	172779832	172779833	rs2422254	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q24.3	NR	rs2422254-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1903	chr1	172779832	172779833	rs2422254	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q24.3	NR	rs2422254-T	0.09283	1E-9		1.065	[1.044-1.086]	Affymetrix [15688218] (imputed)	N
1903	chr1	172779832	172779833	rs2422254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q24.3		rs2422254-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1903	chr1	172796504	172796505	rs6672031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q24.3	RP1-15D23.2	rs6672031-G	0.487366	1E-16		0.01863194	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1903	chr1	172796504	172796505	rs6672031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q24.3	RP1-15D23.2	rs6672031-G	0.487394	4E-15		0.017658168	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1903	chr1	172796504	172796505	rs6672031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q24.3	NR	rs6672031-G	0.417275	3E-20				Affymetrix, Illumina [19872809] (imputed)	N
1903	chr1	172796504	172796505	rs6672031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q24.3	NR	rs6672031-G	0.48634	2E-23		0.020115	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1903	chr1	172796504	172796505	rs6672031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q24.3		rs6672031-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1903	chr1	172823533	172823534	rs10218696	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q24.3	NR	rs10218696-?	NR	8E-6		0.0078997	[0.0044-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1903	chr1	172828479	172828480	rs17371133	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	1q24.3	NR	rs17371133-a	0.517	2E-10		0.94	[0.92-0.96]	Affymetrix, Illumina [16201029] (imputed)	N
1903	chr1	172838847	172838848	rs34884278	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1q24.3	TNFSF18	rs34884278-C	0.3	4E-7				Illumina [7347414] (imputed)	N
1903	chr1	172844351	172844352	rs6425143	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q24.3	RP1-15D23.2	rs6425143-?	NR	1E-17	(subset analysis)			Illumina [130052]	N
1903	chr1	172844351	172844352	rs6425143	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q24.3	NR	rs6425143-?	NR	3E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1903	chr1	172846791	172846792	rs10912488	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	1q24.3		rs10912488-?	NR	2E-8		0.047	NR unit increase	NR [5890016] (imputed)	N
1903	chr1	172853459	172853460	rs7517810	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q24.3	Intergenic	rs7517810-?		8E-9				Illumina [9725440] (imputed)	N
1903	chr1	172853459	172853460	rs7517810	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q24.3	Intergenic	rs7517810-?		2E-21				Illumina [9560910] (imputed)	N
1903	chr1	172853459	172853460	rs7517810	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q24.3	NR	rs7517810-A	0.2361	1E-7	(EA)	1.0629416	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1903	chr1	172853459	172853460	rs7517810	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1q24.3	TNFSF18, TNFSF4, FASLG	rs7517810-T	0.246	2E-15		1.22	[1.16-1.28]	Affymetrix, Illumina [953241] (imputed)	N
1903	chr1	172857049	172857050	rs6704109	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	1q24.3		rs6704109-?	NR	6E-6		0.027	NR unit increase	NR [6490614] (imputed)	N
1903	chr1	172862233	172862234	rs9286879	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1q24.3	TNFSF18, FASLG	rs9286879-G	0.249	6E-22		1.125	[1.083-1.167]	Affymetrix, Illumina [1230000] (imputed)	N
1903	chr1	172862233	172862234	rs9286879	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q24.3	intergenic	rs9286879-G	0.24	2E-9		1.19	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1903	chr1	172863947	172863948	rs2157453	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	1q24.3	TNFSF18, TNFSF4, FASLG	rs2157453-?	NR	8E-7		1.29	[1.17-1.42]	Illumina [517345]	N
1903	chr1	172864651	172864652	rs12142280	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1q24.3	FASLG, TNFSF18	rs12142280-?	0.82	8E-9	(conditioned on rs12068671)	1.1494253		Illumina [139553]	N
1904	chr1	172898376	172898377	rs12035082	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	1q24.3	intergenic	rs12035082-?	0.40	2E-7		1.14	[1.02-1.27]	Affymetrix [see WTCCC]	N
1904	chr1	172903800	172903801	rs16845151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q24.3	NR	rs16845151-T	0.01916	3E-8	(EIF2B1)	0.0168	NR unit increase	Illumina [1671387] (imputed)	N
1904	chr1	172936701	172936702	rs972099	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	1q24.3	TNFSF18	rs972099-A	NR	4E-6		1.19602		Illumina [1233578] (imputed)	N
1904	chr1	172995642	172995643	rs201052613	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Myocardial infarction in darapladib-treated cardiovascular disease (time to event)	740 European, African American, Asian and other ancestry cases	NA	1q25.1	RP1-15D23.2	rs201052613-?	0.012	4E-9		3.21	[2.17-4.76]	Affymetrix, Illumina [9334585] (imputed)	N
1904	chr1	173006384	173006385	rs541022691	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q25.1	RP1-15D23.2	rs541022691-A	0.0026	1E-6		0.3805	[0.23-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1905	chr1	173131492	173131493	rs10158467	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	1q25.1	TNFSF18, TNFSF4	rs10158467-G	0.282	1E-7		1.059	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1905	chr1	173131492	173131493	rs10158467	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q25.1	TNFSF18, TNFSF4	rs10158467-?	NR	8E-29		1.093	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
1905	chr1	173131492	173131493	rs10158467	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q25.1	TNFSF18, TNFSF4	rs10158467-G	NR	7E-12		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1905	chr1	173131907	173131908	rs7553711	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	1q25.1	TNFSF4/OX40L	rs7553711-C	0.285	4E-8		1.33	[1.21-1.46]	Illumina [111240]	N
1905	chr1	173133488	173133489	rs4916209	25337690	Redler S	2015-03-01	J Invest Dermatol	Immunochip-based analysis: high-density genotyping of immune-related loci sheds further light on the autoimmune genetic architecture of alopecia areata.	Alopecia areata	767 European ancestry cases, 1,475 European ancestry controls	1,016 European ancestry cases, 1,060 European ancestry controls	1q25.1	TNFSF4	rs4916209-?	NR	7E-8		1.32	[1.23-1.41]	Illumina [146703]	N
1905	chr1	173141959	173141960	rs7521390	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	1q25.1	TNFSF18, TNFSF4	rs7521390-C	0.296	4E-12		0.032	[0.022-0.042] unit decrease	NR [NR] (imputed)	N
1905	chr1	173141959	173141960	rs7521390	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	1q25.1	TNFSF18, TNFSF4	rs7521390-C	0.296	2E-11		0.031	[0.021-0.041] unit decrease	NR [7647814] (imputed)	N
1906	chr1	173146920	173146921	rs4090390	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q25.1	TNFSF18, TNFSF4	rs4090390-A	0.22	1E-15		1.048	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1906	chr1	173147089	173147090	rs4090391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q25.1		rs4090391-T	NR	1E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1906	chr1	173152035	173152036	rs6691738	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	1q25.1		rs6691738-G	0.3005	5E-9		1.07		Affymetrix, Illumina [9397031] (imputed)	N
1906	chr1	173152035	173152036	rs6691738	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	1q25.1	TNFSF18, TNFSF4	rs6691738-?	NR	3E-8		1.0604454	[1.04-1.08]	Illumina [13747813] (imputed)	N
1906	chr1	173154303	173154304	rs7514229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1q25.1		rs7514229-T	NR	9E-9		0.0538	[0.035-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1906	chr1	173156291	173156292	rs3861950	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	1q25.1	TNFSF4	rs3861950-C	0.3309	7E-9		0.07	NR SD units increase	Illumina [21568490] (imputed)	N
1906	chr1	173163567	173163568	rs7518129	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	1q25.1	TNFSF4, TNSF18, PRDX6	rs7518129-G	0.31	2E-11		1.111	[1.077-1.146]	Affymetrix [10894596] (imputed)	N
1906	chr1	173163567	173163568	rs7518129	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	1q25.1	TNFSF4, TNSF18, PRDX6	rs7518129-G	0.31	5E-9		0.849	[0.56-1.13] unit decrease	Affymetrix [10894596] (imputed)	N
1906	chr1	173163567	173163568	rs7518129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q25.1		rs7518129-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1906	chr1	173166246	173166247	rs1234313	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1q25.1		rs1234313-A	NR	2E-9		0.92	[0.9-0.95]	NR [13810676] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1q25.1	TNFSF4	rs10912564-T	0.306506639950716	3E-8		0.039257757	[0.025-0.053] unit increase	Affymetrix [35186738] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q25.1	TNFSF4	rs10912564-T	0.31	2E-16				NR [> 9500000] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q25.1	TNFSF4	rs10912564-T	0.31480600000000003	2E-14		1.0513837	[1.03803296327663-1.06490626907847]	NR [9572556] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q25.1	NR	rs10912564-T	0.3047	2E-13		1.049	[1.036-1.062]	Affymetrix [15688218] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q25.1	TNFSF4	rs10912564-T	0.3047	2E-9				Affymetrix [15688218] (imputed)	N
1906	chr1	173170617	173170618	rs10912564	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q25.1	NR	rs10912564-T	0.3047	1E-13		1.045	[1.033-1.057]	Affymetrix [15688218] (imputed)	N
1906	chr1	173171672	173171673	rs11811856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	1q25.1	NR	rs11811856-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1906	chr1	173171672	173171673	rs11811856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q25.1	NR	rs11811856-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1906	chr1	173178462	173178463	rs1234315	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	1q25.1	TNFSF4, snoU13	rs1234315-A	0.53	9E-6		1.2786	[NR]	Illumina [421909] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	1q25.1	NR	rs2205960-T	NR	1E-12				Illumina [NR] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.1	LOC100506023	rs2205960-T	0.265	3E-90		1.368	[1.34-1.4]	Illumina [11270530] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q25.1	TNFSF4, LOC100506023	rs2205960-?	NR	2E-7	(Hispanic)	1.42	[1.24-1.62]	Illumina [at least 5000000] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q25.1	TNFSF4, LOC100506023	rs2205960-?	NR	1E-30		1.3	[1.23-1.38]	Illumina [at least 5000000] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	1q25.1	TNFSF4	rs2205960-T	0.25	3E-12		1.36		Illumina [2100739] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1q25.1	TNFSF4	rs2205960-T	0.23	6E-9		1.22	[1.15-1.30]	Illumina [~ 2100000] (imputed)	N
1906	chr1	173191474	173191475	rs2205960	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	1q25.1	TNFSF4	rs2205960-A	0.27	3E-32		1.46	[1.37-1.56]	Illumina [493955]	N
1906	chr1	173206296	173206297	rs76413021	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	1q25.1	PRDX6, TNFSF4	rs76413021-?	NR	3E-13		1.52	[1.36-1.71]	Illumina [NR]	N
1906	chr1	173210788	173210789	rs117278480	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.1	NR	rs117278480-A	0.913	2E-52		0.649	[0.59-0.7]	Illumina [11270530] (imputed)	N
1906	chr1	173216372	173216373	rs844646	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.1	NR	rs844646-A	0.824	8E-14	(conditional)	0.864	[0.82-0.9]	Illumina [11270530] (imputed)	N
1906	chr1	173219470	173219471	rs1012507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q25.1		rs1012507-T	NR	6E-13		0.0126	[0.0093-0.0159] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1906	chr1	173226194	173226195	rs704840	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1q25.1	TNFSF4	rs704840-G		3E-19		1.22	[1.17-1.27]	Illumina [644674]	N
1906	chr1	173226194	173226195	rs704840	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1q25.1	TNFSF4	rs704840-?	NR	4E-7		1.182	[NR]	Illumina [NR]	N
1906	chr1	173231897	173231898	rs1099448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q25.1		rs1099448-T	0.467101	1E-18		0.019670507	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1906	chr1	173231897	173231898	rs1099448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q25.1		rs1099448-T	0.467102	1E-15		0.017812937	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1906	chr1	173231897	173231898	rs1099448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q25.1		rs1099448-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1906	chr1	173231897	173231898	rs1099448	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q25.1	LOC100506023	rs1099448-T	NR	9E-7		0.018305	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
1906	chr1	173236126	173236127	rs844658	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	1q25.1	Intergenic	rs844658-T	0.944797	7E-6		0.820846	[0.46-1.18] unit increase	Illumina [6952813] (imputed)	N
1906	chr1	173251855	173251856	rs10912578	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q25.1	TNFSF4	rs10912578-?	0.46	2E-8	(Chinese)	1.28	[NR]	NR [6344733] (imputed)	N
1906	chr1	173251855	173251856	rs10912578	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q25.1	TNFSF4	rs10912578-?	0.306	2E-15	(EA)	1.28	[NR]	NR [6344733] (imputed)	N
1906	chr1	173251855	173251856	rs10912578	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q25.1	TNFSF4	rs10912578-A		4E-19		1.27	[NR]	Illumina [> 644674] (imputed)	N
1906	chr1	173262227	173262228	rs144551616	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q25.1		rs144551616-G	0.00764	3E-8		0.7581	[0.49-1.03] unit decrease	Illumina [18427348] (imputed)	N
1907	chr1	173284198	173284199	rs4916321	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		1q25.1	AK127238	rs4916321-?		7E-6	(Cluxel size)			Illumina [208975]	N
1907	chr1	173299742	173299743	rs61828284	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1q25.1	TNFSF4	rs61828284-G	0.92	3E-9		1.2345679	[1.16-1.33]	Illumina [133816] (imputed)	N
1907	chr1	173299742	173299743	rs61828284	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	1q25.1	TNFSF18 / TNFSF4	rs61828284-?	NR	5E-6		1.2112403		Illumina [129464] (imputed)	N
1907	chr1	173300839	173300840	rs17346536	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	1q25.1	TNFSF4	rs17346536-G	0.42	9E-6				Illumina [905781]	N
1907	chr1	173301515	173301516	rs1342038	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1q25.1	TNFSF4, LOC730070	rs1342038-G	0.64	4E-6		1.49	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1907	chr1	173306645	173306646	rs6681482	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q25.1	TNFSF4, LOC100506023	rs6681482-?	NR	8E-7	(AA)	1.369863	[1.2-1.56]	Illumina [at least 5000000] (imputed)	N
1907	chr1	173307900	173307901	rs12736195	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	1q25.1	LOC100506023	rs12736195-?	0.721	7E-11		1.5151515	[1.35-1.69]	Illumina [580483] (imputed)	N
1907	chr1	173309712	173309713	rs10798269	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	1q25.1	intergenic	rs10798269-?	0.64	1E-7		1.22	[1.14-1.32]	Illumina [317501]	N
1907	chr1	173332628	173332629	rs1857066	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	1q25.1	TNFSF4, PRDX6, LOC100506023	rs1857066-?	0.25	5E-9		1.1494253		Illumina [4723365]	N
1907	chr1	173337746	173337747	rs2422345	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1q25.1	TNFSF4-LOC100506023	rs2422345-A	NR	3E-8		1.11	[1.05-1.18]	Illumina [6450125] (imputed)	N
1907	chr1	173346342	173346343	rs10753074	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q25.1	TNFSF4, LOC100506023	rs10753074-T		6E-12	(conditional)	1.21	[NR]	Illumina [> 644674] (imputed)	N
1907	chr1	173347836	173347837	rs4916342	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	1q25.1	TNFSF4, PRDX6	rs4916342-?	NR	8E-9		1.33	[1.22-1.49]	Illumina [NR]	N
1907	chr1	173349724	173349725	rs2105325	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q25.1	LOC100506023	rs2105325-A	NR	1E-10		0.108077	[0.076-0.14] unit decrease	Illumina [8380626] (imputed)	N
1907	chr1	173349724	173349725	rs2105325	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	1q25.1	LOC100506023	rs2105325-A	0.26	1E-8	(EA)	0.1024	[0.067-0.137] unit decrease	Illumina [8380626] (imputed)	N
1907	chr1	173349724	173349725	rs2105325	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q25.1	LOC100506023	rs2105325-C	0.79	7E-13		1.12	[1.08-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1907	chr1	173349724	173349725	rs2105325	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	1q25.1	LOC100506023	rs2105325-C	0.74	3E-11	(EA)	1.12	[1.08-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1907	chr1	173359186	173359187	rs2039982	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.1	NR	rs2039982-T	0.656	2E-37		1.242	[1.21-1.28]	Illumina [11270530] (imputed)	N
1907	chr1	173368670	173368671	rs1578624	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs1578624-T	NR	4E-8		0.2115	[0.14-0.29] unit increase	Illumina [NR] (imputed)	N
1907	chr1	173375844	173375845	rs78873212	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	1q25.1	RP11-296O14.3	rs78873212-A	0.09	3E-6		0.74	[0.43-1.05] unit increase	Illumina [5833901] (imputed)	N
1907	chr1	173385472	173385473	rs4554754	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	1q25.1	SLAMF7	rs4554754-G	0.1781	2E-8		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
1907	chr1	173399676	173399677	rs148137538	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q25.1	PRDX6	rs148137538-A	0.976551	4E-8		0.0250491	[0.016-0.034] unit increase	Affymetrix [12370749]	N
1907	chr1	173399676	173399677	rs148137538	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs148137538-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1907	chr1	173399676	173399677	rs148137538	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.1		rs148137538-A	0.97686	6E-9		0.041	[0.027-0.055] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1907	chr1	173399676	173399677	rs148137538	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1q25.1	NR	rs148137538-G	0.02314	1E-11		0.0389	[0.03-0.048] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1908	chr1	173428131	173428132	rs5778766	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	1q25.1	NR	rs5778766-T	0.3214	8E-7		0.1582	[0.096-0.221] unit increase	Illumina [10677593] (imputed)	N
1908	chr1	173429994	173429995	rs12140760	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs12140760-?	NR	4E-6		4.595	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1908	chr1	173441465	173441466	rs34259759	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRDX6	5,363 Icelandic ancestry individuals	NA	1q25.1		rs34259759-C	0.1542	9E-53		0.391105	[0.34-0.44] unit increase	Illumina [7506463] (imputed)	N
1908	chr1	173446933	173446934	rs6671141	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q25.1	PRDX6	rs6671141-T	0.84984375	9E-33	(PRDX6, 5018_68_1)	0.41324922	[0.35-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
1908	chr1	173508784	173508785	rs301696	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q25.1	NR	rs301696-?	NR	7E-9				Affymetrix [NR]	N
1909	chr1	173575982	173575983	rs5778775	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs5778775-CT	0.8882	8E-13		0.1275	[0.093-0.162] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1909	chr1	173580302	173580303	rs61828917	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs61828917-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1909	chr1	173583413	173583414	rs6688567	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q25.1	ANKRD45	rs6688567-T	NR	3E-6		0.028669	[0.017-0.041] unit increase	Illumina [13520550] (imputed)	N
1909	chr1	173625709	173625710	rs7365380	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	ANKRD45	rs7365380-T	NR	4E-8		5.475	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1909	chr1	173646772	173646773	rs61826793	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q25.1	NR	rs61826793-?	NR	4E-8		1.0697247	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1909	chr1	173657021	173657022	rs149415799	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	1q25.1	intergenic	rs149415799-C	0.019	5E-6		3.41	[2.01-5.77]	Illumina [3905175] (imputed)	N
1910	chr1	173699006	173699007	rs4606360	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1q25.1	NR	rs4606360-A	0.6308	3E-7		0.015652888	[0.0097-0.0216] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1910	chr1	173741070	173741071	rs77154778	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs77154778-A	0.0220059	1E-8		5.73	z score decrease	NR [10847151] (imputed)	N
1911	chr1	173802607	173802608	rs35515638	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	1q25.1	DARS2	rs35515638-G	0.0018	2E-7		0.257	[0.16-0.35] unit increase	Affymetrix, Illumina [at least 228985]	N
1911	chr1	173802607	173802608	rs35515638	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	1q25.1	DARS2	rs35515638-G	0.0013	1E-7		0.2011	[0.13-0.28] unit increase	Affymetrix, Illumina [at least 228985]	N
1911	chr1	173813196	173813197	rs3791020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q25.1	DARS2	rs3791020-A	0.237618	5E-9		0.015111201	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1911	chr1	173813196	173813197	rs3791020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q25.1	DARS2	rs3791020-A	0.237645	2E-9		0.015488908	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1911	chr1	173813196	173813197	rs3791020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q25.1	NR	rs3791020-A	0.239323	2E-12		0.01513	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1911	chr1	173813196	173813197	rs3791020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q25.1	NR	rs3791020-A	0.23944	4E-12		0.014975	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1911	chr1	173825691	173825692	rs2295366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs2295366-G	0.252425	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
1911	chr1	173825691	173825692	rs2295366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs2295366-G	0.251867	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1911	chr1	173831610	173831610	rs201119706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q25.1		rs201119706-CA	NR	3E-12		0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1911	chr1	173831881	173831882	rs2208849	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs2208849-?	NR	7E-8		5.387	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1911	chr1	173835210	173835211	rs2067079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q25.1	NR	rs2067079-T	0.224258	4E-16		0.017933	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1911	chr1	173835210	173835211	rs2067079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q25.1		rs2067079-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1911	chr1	173836247	173836247	rs144869587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q25.1	GAS5	rs144869587-TA	0.22221	1E-12		0.018746642	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1911	chr1	173839239	173839240	rs1322774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs1322774-T	0.240014	5E-16				Affymetrix, Illumina [24332387] (imputed)	N
1911	chr1	173848807	173848808	rs28680958	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1q25.1	NR	rs28680958-A	0.23	2E-10		0.013069956	[0.009-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
1911	chr1	173848807	173848808	rs28680958	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1q25.1	NR	rs28680958-A	0.216767090768648	3E-8		0.0061734323	[0.004-0.0084] unit decrease	NR [NR]	N
1911	chr1	173848807	173848808	rs28680958	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1q25.1	NR	rs28680958-A	0.216767090768648	4E-8		0.007578531	[0.0049-0.0103] unit decrease	NR [NR]	N
1911	chr1	173848807	173848808	rs28680958	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q25.1	NR	rs28680958-A	0.216767090768648	3E-8		0.009903482	[0.0064-0.0134] unit decrease	NR [NR]	N
1911	chr1	173848807	173848808	rs28680958	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q25.1	NR	rs28680958-A	0.216767090768648	3E-8		0.006313394	[0.0041-0.0085] unit decrease	NR [NR]	N
1911	chr1	173848807	173848808	rs28680958	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1q25.1	NR	rs28680958-A	0.217	7E-13		0.0114771	[0.0083-0.0146] unit decrease	NR [~ 9732723] (imputed)	N
1911	chr1	173848807	173848808	rs28680958	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1q25.1	NR	rs28680958-A	0.217	5E-10		0.010996457	[0.0075-0.0145] unit decrease	NR [~ 10000000] (imputed)	N
1911	chr1	173853126	173853127	rs9425766	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	1q25.1	NR	rs9425766-T	0.6626	9E-6		0.0168	[0.0094-0.0242] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1911	chr1	173853833	173853836	rs5778781	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q25.1		rs5778781-T	0.23627	9E-9		0.1859	[0.12-0.25] unit increase	Illumina [17954496] (imputed)	N
1911	chr1	173853833	173853833	rs772960943	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q25.1		rs772960943-?	NR	8E-13		0.0175545	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1911	chr1	173868954	173868955	rs6691053	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1q25.1	NR	rs6691053-T	0.2144	3E-8		0.0389	[0.03-0.048] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1911	chr1	173868954	173868955	rs6691053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q25.1		rs6691053-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1911	chr1	173875400	173875401	rs2227612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	1q25.1		rs2227612-G	0.221567	1E-8		0.0218715	[0.014-0.029] unit increase	Illumina [13479178] (imputed)	N
1911	chr1	173878831	173878832	rs5878	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q25.1	NR	rs5878-G	NR	1E-7		0.01139	[0.0072-0.0156] unit increase	Illumina [~ 540852]	N
1911	chr1	173878861	173878862	rs5877	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q25.1	NR	rs5877-T	0.6691	1E-8		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1911	chr1	173878861	173878862	rs5877	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1q25.1	NR	rs5877-C	0.34	2E-8		0.011	[0.0071-0.0149] unit increase	Illumina [NR] (imputed)	N
1911	chr1	173880751	173880752	rs2227607	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q25.1	SERPINC1	rs2227607-C	0.890364	2E-12		0.0206117	[0.015-0.026] unit increase	NR [13737936] (imputed)	N
1911	chr1	173891816	173891817	rs1951627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q25.1	Intergenic	rs1951627-A	0.2604	4E-10	(MTAG)	0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1911	chr1	173891816	173891817	rs1951627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q25.1	Intergenic	rs1951627-G	0.7396	2E-10		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1911	chr1	173906934	173906935	rs41304550	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs41304550-T	0.0226474	4E-9		5.88	z score decrease	NR [10847151] (imputed)	N
1911	chr1	173908433	173908434	rs149647582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.1		rs149647582-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1911	chr1	173917649	173917650	rs7547280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.1	NR	rs7547280-A	NR	3E-10		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1911	chr1	173930927	173930928	rs77941945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q25.1		rs77941945-C	NR	8E-9		0.0842	[0.056-0.113] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1911	chr1	173930927	173930928	rs77941945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q25.1		rs77941945-C	NR	2E-9		0.0878	[0.059-0.116] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1911	chr1	173930927	173930928	rs77941945	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	1q25.1		rs77941945-?	NR	2E-10		0.0763737	[0.052-0.101] unit decrease	NR [9800000] (imputed)	N
1912	chr1	173978362	173978363	rs77842897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs77842897-A	0.986214	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
1912	chr1	173984762	173984763	rs12063313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs12063313-A	0.247801	6E-16				Affymetrix, Illumina [24649327] (imputed)	N
1912	chr1	173984762	173984763	rs12063313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs12063313-A	0.226686	2E-17				Affymetrix, Illumina [23114412] (imputed)	N
1912	chr1	173987066	173987067	rs12120395	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RC3H1	rs12120395-?	NR	2E-10	(female)	1.14484	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1912	chr1	173987797	173987798	rs10798302	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q25.1	NR	rs10798302-G	NR	2E-8		0.01511	[0.0099-0.0204] unit increase	Illumina [~ 540852]	N
1912	chr1	173991278	173991279	rs527543513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q25.1	NR	rs527543513-A	0.014388	2E-11		0.055513	[0.039-0.072] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1912	chr1	173999106	173999107	rs28873209	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs28873209-A	0.2707	1E-9		0.0753	[0.051-0.099] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1912	chr1	174013529	174013530	rs140581634	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs140581634-T	0.0307275	2E-8		5.63	z score decrease	NR [10847151] (imputed)	N
1912	chr1	174015258	174015259	rs6701877	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	1q25.1		rs6701877-?	NR	6E-10		0.0146	NR unit decrease	NR [4548414] (imputed)	N
1912	chr1	174015260	174015261	rs61826828	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q25.1	NR	rs61826828-A	NR	9E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1912	chr1	174059042	174059043	rs6685314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q25.1		rs6685314-G	NR	4E-9		0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1913	chr1	174076863	174076864	rs6672986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.1		rs6672986-C	0.4478	6E-11		0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr1	174076863	174076864	rs6672986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.1	Intergenic	rs6672986-C	0.4478	2E-13	(MTAG)	0.0098	[0.0073-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1913	chr1	174104742	174104743	rs2901785	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q25.1		rs2901785-G	0.557	1E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1913	chr1	174104742	174104743	rs2901785	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q25.1	NR	rs2901785-A	0.446	2E-18		0.00946459	[0.0073-0.0116] unit decrease	NR [9732723] (imputed)	N
1913	chr1	174104742	174104743	rs2901785	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q25.1	NR	rs2901785-A	0.446	1E-11		0.017308272	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1913	chr1	174104742	174104743	rs2901785	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1q25.1	NR	rs2901785-A	0.431	6E-9		0.0128143	[0.0085-0.0171] unit decrease	NR [9732723] (imputed)	N
1913	chr1	174104742	174104743	rs2901785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.1		rs2901785-A	0.4452	9E-10	(conditional-joint)	0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr1	174131012	174131013	rs34623288	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q25.1	NR	rs34623288-?	NR	7E-9				Illumina [7760689] (imputed)	N
1913	chr1	174144061	174144062	rs76785379	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs76785379-T	0.0224268	2E-9		5.99	z score decrease	NR [10847151] (imputed)	N
1913	chr1	174153283	174153284	rs12076771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q25.1	NR	rs12076771-T	0.277226	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
1913	chr1	174170340	174170341	rs6681618	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs6681618-T	0.8869	4E-9		0.1472	[0.098-0.196] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1913	chr1	174189268	174189269	rs56188862	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	1q25.1	RABGAP1L	rs56188862-T	0.614947	2E-13		0.016829	[0.012-0.021] unit increase	Affymetrix [19400838] (imputed)	N
1913	chr1	174189268	174189269	rs56188862	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1q25.1	RABGAP1L	rs56188862-T	0.6128	2E-8		0.0088	[0.0057-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
1914	chr1	174215857	174215858	rs115073088	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q25.1	RABGAP1L	rs115073088-G	0.025000000000000022	4E-12		1.0784233		Affymetrix [11880941] (imputed)	N
1914	chr1	174222831	174222832	rs114017545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q25.1	RABGAP1L	rs114017545-T	0.00676900000000003	6E-10		0.08726963	[0.06-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
1914	chr1	174222831	174222832	rs114017545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q25.1	RABGAP1L	rs114017545-T	0.006772	2E-9		0.084747806	[0.057-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
1914	chr1	174222831	174222832	rs114017545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q25.1	NR	rs114017545-T	0.006855	5E-12		0.082346	[0.059-0.106] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1914	chr1	174222831	174222832	rs114017545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q25.1		rs114017545-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1914	chr1	174244619	174244620	rs58831567	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs58831567-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1914	chr1	174288601	174288602	rs7512930	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs7512930-?	NR	9E-8		5.35	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1914	chr1	174290780	174290781	rs7552830	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	1q25.1	NR	rs7552830-T	0.449	3E-9		0.012276363	[0.0082-0.0163] unit decrease	Affymetrix [10613246] (imputed)	N
1914	chr1	174312812	174312813	rs17301013	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	1q25.1	RABGAP1L	rs17301013-?	0.583	8E-6		1.4285715	[1.23-1.64]	Illumina [580483] (imputed)	N
1914	chr1	174321996	174321997	rs61828641	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs61828641-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1914	chr1	174321996	174321997	rs61828641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q25.1		rs61828641-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1914	chr1	174321996	174321997	rs61828641	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q25.1	NA	rs61828641-A	0.1092	2E-13		0.0223	[0.016-0.028] unit increase	NR [~ 27400000] (imputed)	N
1914	chr1	174325691	174325692	rs2049992	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q25.1	Intergenic	rs2049992-A	0.5473	1E-9	(MTAG)	0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1915	chr1	174326701	174326702	rs6666767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.1	Intergenic	rs6666767-A	0.5441	2E-13	(MTAG)	0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1915	chr1	174335153	174335153	rs147612579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q25.1		rs147612579-AT	NR	6E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1915	chr1	174369674	174369675	rs16846938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1q25.1		rs16846938-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1915	chr1	174371103	174371104	rs61826865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q25.1		rs61826865-A	NR	4E-17		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1915	chr1	174391323	174391324	rs6425280	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	1q25.1	NR	rs6425280-G	0.46	7E-10		0.00976468	[0.0067-0.0129] unit decrease	NR [9732723] (imputed)	N
1915	chr1	174421993	174421994	rs75650221	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.1		rs75650221-T	0.03814	9E-10		0.034	[0.022-0.046] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1915	chr1	174421993	174421994	rs75650221	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1q25.1	NR	rs75650221-T	0.03814	4E-18		0.0389	[0.03-0.048] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1915	chr1	174421993	174421994	rs75650221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1q25.1		rs75650221-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1915	chr1	174421993	174421994	rs75650221	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1q25.1	NR	rs75650221-T	NR	3E-9		0.03572	[0.024-0.048] unit decrease	Affymetrix [10847151] (imputed)	N
1915	chr1	174421993	174421994	rs75650221	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs75650221-T	0.0385517	3E-10		6.29	z score decrease	NR [10847151] (imputed)	N
1915	chr1	174432881	174432882	rs12092768	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q25.1	ANKRD45	rs12092768-A	0.284798	2E-9		6.02	z score decrease	NR [10847151] (imputed)	N
1915	chr1	174434331	174434332	rs12568655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	1q25.1		rs12568655-A	NR	9E-10		0.0395	[0.027-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1915	chr1	174434331	174434332	rs12568655	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	1q25.1	RABGAP1L	rs12568655-A	0.388338	1E-9		0.040731765	[0.028-0.054] unit decrease	Affymetrix [7288503] (imputed)	N
1915	chr1	174440682	174440683	rs10489261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q25.1		rs10489261-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1915	chr1	174447587	174447588	rs10218528	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	1q25.1	ANKRD45	rs10218528-A	0.400556	3E-8		5.54	z score decrease	NR [10847151] (imputed)	N
1916	chr1	174463048	174463049	rs4284300	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RABGAP1L	rs4284300-?	NR	1E-10	(female)	1.16295	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1916	chr1	174465938	174465939	rs7536102	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q25.1	NR	rs7536102-T	NR	2E-9		6.032	z score increase	Affymetrix [10847151] (imputed)	N
1916	chr1	174478099	174478100	rs12564992	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q25.1	NA	rs12564992-A	0.8876	3E-13		0.0189	[0.014-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1916	chr1	174486066	174486066	rs372529987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q25.1	NR	rs372529987-I	0.160104	2E-13		0.0207	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1916	chr1	174486109	174486109	rs200447114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q25.1	RABGAP1L	rs200447114-AAAAT	0.159898	1E-9		0.018419972	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1916	chr1	174486109	174486109	rs200447114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q25.1	RABGAP1L	rs200447114-AAAAT	0.159897	8E-12		0.02064466	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1916	chr1	174495432	174495433	rs79589199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q25.1		rs79589199-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1916	chr1	174497641	174497642	rs12088073	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q25.1	NR	rs12088073-C	NR	5E-8		0.01118	[0.0072-0.0152] unit increase	Illumina [~ 540852]	N
1916	chr1	174552810	174552811	rs17301853	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	1q25.1	intergenic	rs17301853-?	0.88	1E-6		1.16	[1.1-1.25]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1916	chr1	174552810	174552811	rs17301853	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	1q25.1	intergenic	rs17301853-?	0.88	7E-6		1.19	[1.1-1.28]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1916	chr1	174575641	174575642	rs114162361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs114162361-C	0.986706	8E-10				Affymetrix, Illumina [22063850] (imputed)	N
1916	chr1	174575641	174575642	rs114162361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q25.1	NR	rs114162361-C	0.986485	7E-11		0.053453	[0.037-0.069] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1916	chr1	174575641	174575642	rs114162361	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	1q25.1	RABGAP1L	rs114162361-C	0.01	9E-7		0.6189	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1917	chr1	174619317	174619318	rs138329430	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q25.1	RABGAP1L	rs138329430-G	0.890239	5E-9		0.0127982	[0.0085-0.0171] unit decrease	Affymetrix [12370749]	N
1917	chr1	174676431	174676432	rs333418	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs333418-?	NR	3E-7		5.136	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1917	chr1	174702909	174702910	rs459078	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q25.1	NR	rs459078-T	0.287257	3E-9		5.96	z score decrease	NR [10847151] (imputed)	N
1917	chr1	174715050	174715051	rs16847402	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q25.1	NR	rs16847402-G	NR	2E-8		0.01856	[0.012-0.025] unit increase	Illumina [~ 540852]	N
1918	chr1	174729982	174729983	rs77417259	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	KLHL20	rs77417259-A	0.0296147	3E-10		6.3	z score decrease	NR [10847151] (imputed)	N
1918	chr1	174775130	174775131	rs913687	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1q25.1	NR	rs913687-?	NR	2E-8		0.01442	[0.0094-0.0195] unit decrease	Affymetrix [10847151] (imputed)	N
1918	chr1	174790810	174790811	rs6658917	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.1	NR	rs6658917-?	NR	7E-6		0.0077653	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1918	chr1	174791812	174791813	rs1793291	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs1793291-?	NR	2E-6		4.807	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1918	chr1	174806800	174806801	rs1754349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.1	NR	rs1754349-C	0.884538	1E-10		0.135683	[0.094-0.177] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1918	chr1	174835480	174835481	rs140588606	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs140588606-A	0.029743	6E-10		6.2	z score decrease	NR [10847151] (imputed)	N
1919	chr1	174851778	174851779	rs6425302	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q25.1	NR	rs6425302-A	0.284086	5E-9		5.86	z score decrease	NR [10847151] (imputed)	N
1919	chr1	174864554	174864554	rs542011541	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1q25.1	RABGAP1L	rs542011541-CT		2E-18		0.0088	[0.0068-0.0108] unit increase	Affymetrix [13304133] (imputed)	N
1919	chr1	174872030	174872031	rs61828140	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs61828140-C	0.1194	3E-11		0.112	[0.079-0.145] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1919	chr1	174872428	174872429	rs4651205	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	1q25.1	SERPINC1	rs4651205-T	0.28022	4E-8		5.5	z score decrease	NR [10847151] (imputed)	N
1919	chr1	174880808	174880809	rs4650666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q25.1		rs4650666-T	NR	1E-10		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1919	chr1	174884160	174884161	rs6688577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs6688577-T	0.38201	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
1919	chr1	174885242	174885243	rs6425305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.1	NR	rs6425305-G	0.164403	1E-10		0.146633	[0.1-0.19] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1919	chr1	174895021	174895022	rs549669428	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1q25.1	RABGAP1L	rs549669428-G	NR	5E-8		0.84	[0.78-0.9]	Illumina [NR] (imputed)	N
1919	chr1	174895321	174895322	rs78167602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.1	NR	rs78167602-?	NR	8E-6		0.0077097	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1919	chr1	174916369	174916369	rs398089678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1q25.1		rs398089678-CAG	NR	1E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1919	chr1	174921143	174921144	rs4651238	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1q25.1	NR	rs4651238-G	0.442	3E-10		0.00928855	[0.0064-0.0122] unit increase	NR [9732723] (imputed)	N
1919	chr1	174924929	174924930	rs12061403	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs12061403-A	0.4649	4E-8		0.0884	[0.057-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1919	chr1	174930955	174930956	rs12074821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs12074821-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1919	chr1	174973725	174973726	rs75035127	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q25.1	NR	rs75035127-A	0.0296836	7E-9		5.8	z score increase	NR [10847151] (imputed)	N
1920	chr1	174983206	174983207	rs16847706	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q25.1	NR	rs16847706-C	NR	3E-7		0.01684	[0.01-0.023] unit increase	Illumina [~ 540852]	N
1920	chr1	174986978	174986979	rs10912869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs10912869-C	0.982631	5E-10				Affymetrix, Illumina [24649327] (imputed)	N
1920	chr1	174986978	174986979	rs10912869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.1	NR	rs10912869-C	0.983351	4E-11				Affymetrix, Illumina [23114412] (imputed)	N
1920	chr1	174988015	174988016	rs10912870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q25.1	MRPS14	rs10912870-T	0.336173	7E-9		0.013784959	[0.0091-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1920	chr1	174988962	174988963	rs10465483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q25.1		rs10465483-A	NR	2E-11		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1920	chr1	174993621	174993622	rs6669560	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	1q25.1	MRPS14	rs6669560-T	NR	3E-9		0.156	[0.11-0.21] unit increase	Affymetrix [7701190] (imputed)	N
1920	chr1	175001178	175001179	rs77560793	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q25.1	MRPS14	rs77560793-G	0.969354	8E-10		0.0245625	[0.017-0.032] unit increase	Affymetrix [12370749]	N
1920	chr1	175001178	175001179	rs77560793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.1	NR	rs77560793-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1920	chr1	175001178	175001179	rs77560793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q25.1		rs77560793-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1920	chr1	175001178	175001179	rs77560793	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1q25.1	NA	rs77560793-A	0.0304	1E-11		0.0379	[0.027-0.049] unit decrease	NR [~ 27400000] (imputed)	N
1920	chr1	175014556	175014557	rs6425313	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SDCCAG3P2	rs6425313-?	NR	3E-9	(female)	1.05083	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1920	chr1	175015849	175015850	rs61827378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q25.1	SDCCAG3P2	rs61827378-C	0.270645	1E-9		0.01556793	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1920	chr1	175111573	175111574	rs10732995	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	1q25.1	NR	rs10732995-T	0.966	4E-7		0.29	[0.17-0.41] unit increase	Illumina [~ 8400000] (imputed)	N
1920	chr1	175111760	175111760	rs567058829	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q25.1	TNN	rs567058829-C		4E-8		0.197	unit increase	Affymetrix [at least 2696785] (imputed)	N
1921	chr1	175120078	175120079	rs6701037	21703634	Wang KS	2011-06-22	J Psychiatr Res	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Alcohol dependence	1,283 European ancestry cases, 1,416 European ancestry controls	1,650 European ancestry cases and 1,684 European ancestry controls from 778 nuclear families	1q25.1	KIAA0040	rs6701037-C	0.46	2E-7				Illumina [up to 818773]	N
1921	chr1	175130203	175130204	rs1057239	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q25.1	chr1mb175	rs1057239-A	0.468363595	4E-6		0.1253	[0.072-0.178] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1921	chr1	175132370	175132371	rs1894709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q25.1		rs1894709-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1921	chr1	175140318	175140319	rs12136973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q25.1		rs12136973-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1921	chr1	175143206	175143207	rs3766694	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	1q25.1	NR	rs3766694-?	NR	3E-14				NR [up to 7000000]	N
1921	chr1	175177299	175177300	rs2205611	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	1q25.1		rs2205611-T	0.0296888	2E-8		0.0759586	[0.05-0.102] unit increase	Illumina [7980478] (imputed)	N
1922	chr1	175245102	175245103	rs6663255	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.1	NR	rs6663255-?	NR	8E-6		0.0077667	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1922	chr1	175252639	175252640	rs73046091	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	1q25.1	TNR	rs73046091-G	NR	5E-8		0.459	[0.29-0.62] unit increase	NR [11024754] (imputed)	N
1922	chr1	175293423	175293424	rs2213635	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q25.1	NA	rs2213635-T		4E-12		0.0142243	[0.01-0.018] unit decrease	Illumina [13288253] (imputed)	N
1922	chr1	175296447	175296448	rs3766680	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	1q25.1	TNR	rs3766680-?	NR	4E-6	(FWLTA)			Affymetrix [70897]	N
1922	chr1	175322305	175322306	rs191624305	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	1q25.1	NR	rs191624305-T	0.9	2E-7		1.21	[1.13-1.30]	Illumina [~ 1072558] (imputed)	N
1922	chr1	175327840	175327841	rs34633780	33407712	Liang X	2021-01-06	Mol Brain	Evaluating the genetic effects of sex hormone traits on the development of mental traits: a polygenic score analysis and gene-environment-wide interaction study in UK Biobank cohort.	Testosterone levels x fluid intelligence interaction	160,121 British ancestry individuals	NA	1q25.1	TNR	rs34633780-T	NR	3E-8		0.1051	NR unit decrease	Affymetrix [NR] (imputed)	N
1922	chr1	175343296	175343297	rs1351963	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q25.1	TNN	rs1351963-?	NR	9E-7	(PC 36:3)	0.16407028	[0.099-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1922	chr1	175345602	175345602	rs58978565	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression to choroidal neovascularization form in age-related macular degeneration	508 progressed eyes and 3,912 non-progressed eyes from up to 2,721 European ancestry individuals	NA	1q25.1	TNR	rs58978565-CAGAGT	0.36	2E-8		1.51		Illumina [8974355] (imputed)	N
1922	chr1	175348722	175348723	rs859427	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q25.1	TNN	rs859427-?	NR	4E-6	(LPE 16:0)	0.16566224	[0.095-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1923	chr1	175385588	175385589	rs859470	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	1q25.1		rs859470-T	0.0493	3E-8		0.2137	[0.14-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1923	chr1	175387678	175387679	rs859472	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	1q25.1	TNR	rs859472-G	0.417749	5E-6		0.455954	[0.27-0.65] unit increase	NR [7263501] (imputed)	N
1923	chr1	175436370	175436371	rs6681506	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	1q25.1		rs6681506-C	0.3542	8E-6		1.463	[1.239-1.728]	Affymetrix [7975321] (imputed)	N
1923	chr1	175443497	175443498	rs78025620	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q25.1	NR	rs78025620-?	NR	4E-9				Illumina [7760689] (imputed)	N
1923	chr1	175475793	175475794	rs859383	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	1q25.1	TNR	rs859383-C	0.057	2E-6		0.246	[0.145-0.346] unit decrease	Affymetrix [7519176] (imputed)	N
1923	chr1	175495089	175495090	rs859362	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	1q25.1	TNR	rs859362-T	0.19	7E-6		1.1	[1.05-1.15]	NR [~ 55000000] (imputed)	N
1924	chr1	175595996	175595997	rs1323129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.1	NR	rs1323129-T	0.149555	9E-10		0.153294	[0.1-0.2] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1925	chr1	175715605	175715606	rs17312292	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		1q25.1	NR	rs17312292-C		7E-6		0.88	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1925	chr1	175720457	175720458	rs566422	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	1q25.1	TNR	rs566422-G	0.03	4E-6	(adjusted for severity)	1.63	[1.43-1.83]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1925	chr1	175724077	175724078	rs10798415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.1	NR	rs10798415-C	0.362223	2E-9		0.083799	[0.057-0.111] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1925	chr1	175733962	175733963	rs6686722	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	1q25.1	TNR	rs6686722-?	NR	3E-8		2.399808	[1.76-3.27]	Illumina [5407269] (imputed)	N
1925	chr1	175744279	175744280	rs12040251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q25.1	Intergenic	rs12040251-T	0.1663	5E-8	(MTAG)	0.0168	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1926	chr1	175777466	175777467	rs2901984	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.1	NR	rs2901984-?	NR	7E-8		5.4	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1926	chr1	175837672	175837673	rs4652135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.1		rs4652135-A	0.7201	4E-11		0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1926	chr1	175837672	175837673	rs4652135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.1	Intergenic	rs4652135-A	0.7201	1E-9	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1926	chr1	175849207	175849208	rs1570926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.1		rs1570926-T	0.2818	1E-11	(conditional-joint)	0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1926	chr1	175869553	175869554	rs10753110	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	1q25.1		rs10753110-?	NR	5E-6				Illumina [1365315]	N
1927	chr1	175902595	175902596	rs6680839	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q25.1	NR	rs6680839-T		9E-10		0.025214	[0.017-0.033] unit decrease	NR [6694342]	N
1927	chr1	175913827	175913828	rs10913112	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1q25.1	NR	rs10913112-C	NR	1E-10		1.0309278		NR [NR] (imputed)	N
1927	chr1	175913827	175913828	rs10913112	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1q25.1	NR	rs10913112-C	0.6233	2E-20		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
1927	chr1	175954754	175954755	rs10913118	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q25.1	TNR, PAPPA2, SCARNA3	rs10913118-A	0.656391291291002	4E-8		0.015760293	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1927	chr1	175974793	175974794	rs184147074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.1	RFWD2	rs184147074-A	NR	2E-8		0.0542907	[0.036-0.073] unit decrease	Affymetrix [323123] (imputed)	N
1927	chr1	175993819	175993820	rs34973462	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	1q25.1	NR	rs34973462-T	0.334	6E-9		0.015072901	[0.01-0.0201] unit increase	NR [~ 10000000] (imputed)	N
1927	chr1	175993819	175993820	rs34973462	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	1q25.1	NR	rs34973462-T	0.334	1E-9		0.0141909	[0.0096-0.0188] unit increase	NR [9732723] (imputed)	N
1927	chr1	176000112	176000113	rs12040241	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1q25.1	NR	rs12040241-T	0.6194	3E-9		0.02516353	[0.017-0.033] unit increase	NR [NR]	N
1927	chr1	176027199	176027200	rs78275727	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.1	COP1	rs78275727-A	0.7716	3E-13		0.0163	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1928	chr1	176060495	176060496	rs66670561	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	1q25.1	RFWD2	rs66670561-?	0.412353	6E-7		1.420046	[1.23795-1.628927]	Affymetrix, Illumina [NR] (imputed)	N
1929	chr1	176182721	176182722	rs4526571	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	1q25.2	NR	rs4526571-A	0.382950322668	1E-8		0.0071055368	[0.0047-0.0096] unit decrease	NR [NR]	N
1929	chr1	176182721	176182722	rs4526571	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q25.2	NR	rs4526571-A	0.382950322668	8E-9		0.009236985	[0.0061-0.0124] unit decrease	NR [NR]	N
1929	chr1	176182721	176182722	rs4526571	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	1q25.2	NR	rs4526571-A	0.382950322668	2E-8		0.007677695	[0.005-0.0104] unit decrease	NR [NR]	N
1929	chr1	176182721	176182722	rs4526571	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q25.2	NR	rs4526571-A	0.382950322668	1E-8		0.0061158673	[0.004-0.0082] unit decrease	NR [NR]	N
1929	chr1	176184055	176184056	rs2175177	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q25.2	NR	rs2175177-A		1E-8		0.0234815	[0.015-0.032] unit decrease	NR [6694342]	N
1929	chr1	176210728	176210729	rs76224110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs76224110-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1929	chr1	176226047	176226048	rs352327	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q25.2	RFWD2	rs352327-C	NR	3E-7		0.12290401	[0.076-0.169] unit decrease	Illumina [> 6200000] (imputed)	N
1930	chr1	176302096	176302097	rs12024295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q25.2	RP11-357J22.1	rs12024295-C	NR	3E-8		0.0165033	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1930	chr1	176318603	176318604	rs11809140	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q25.2	NR	rs11809140-T		2E-8		0.0229278	[0.015-0.031] unit decrease	NR [6694342]	N
1930	chr1	176321146	176321147	rs10913160	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1q25.2	NR	rs10913160-A	0.40085681306068	1E-9		0.0057240203	[0.0039-0.0076] unit decrease	NR [NR]	N
1930	chr1	176377199	176377200	rs78903944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs78903944-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1930	chr1	176388135	176388136	rs114034166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs114034166-A	NR	1E-10		0.0505012	[0.035-0.066] unit decrease	Affymetrix [323123] (imputed)	N
1930	chr1	176414780	176414781	rs4650943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	PAPPA2	rs4650943-A	0.5266	2E-8	(EA)	0.0267	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1930	chr1	176414780	176414781	rs4650943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	AK096400, PAPPA2	rs4650943-A	0.5266	5E-7	(EA, women)	0.0301	[0.018-0.042] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1930	chr1	176414780	176414781	rs4650943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.2	PAPPA2	rs4650943-A	0.5291	5E-6	(EA, women)	0.0609	[0.035-0.087] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1930	chr1	176414780	176414781	rs4650943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	PAPPA2	rs4650943-?	0.5266	6E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1930	chr1	176414780	176414781	rs4650943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	AK096400, PAPPA2	rs4650943-?	0.5266	2E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1930	chr1	176422848	176422849	rs12096483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs12096483-A	NR	1E-8		0.0344062	[0.023-0.046] unit decrease	Affymetrix [323123] (imputed)	N
1931	chr1	176423139	176423140	rs4471226	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	1q25.2	PAPPA2	rs4471226-C	0.1	3E-6		0.097	[0.056-0.138] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
1931	chr1	176425273	176425274	rs12095989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs12095989-C	NR	4E-15		0.037	[0.028-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr1	176445701	176445702	rs6425386	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q25.2	NR	rs6425386-T	0.382614	7E-9		0.0594976	[0.039-0.08] unit increase	Affymetrix [21375087] (imputed)	N
1931	chr1	176486890	176486891	rs12064625	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (pleiotropy)	944 European ancestry cases, 4,320 European ancestry controls	NA	1q25.2	PAPPA2	rs12064625-?	NR	3E-7		1.35	1.2-1.51	Illumina [959859] (imputed)	N
1931	chr1	176486890	176486891	rs12064625	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (late onset)(pleiotropy)	618 European ancestry cases, 4,320 European ancestry controls	NA	1q25.2	PAPPA2	rs12064625-?	NR	1E-7		1.44	1.26-1.65	Illumina [959859] (imputed)	N
1931	chr1	176500059	176500060	rs4233168	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.2	PAPPA2	rs4233168-A	0.0812	1E-11		0.023	[0.016-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1931	chr1	176500059	176500060	rs4233168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs4233168-?	NR	9E-26				NR [~ 8900000] (imputed)	N
1931	chr1	176501830	176501831	rs77281709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs77281709-T	NR	5E-15		0.0444	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr1	176507814	176507815	rs72715193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs72715193-A	NR	2E-37		0.0646	[0.055-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr1	176521348	176521349	rs11583447	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.2	PAPPA2	rs11583447-T	0.5729	4E-26		0.0201	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1931	chr1	176521654	176521655	rs10913200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs10913200-A	NR	9E-16		0.0728357	[0.055-0.091] unit decrease	Affymetrix [323123] (imputed)	N
1931	chr1	176521654	176521655	rs10913200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs10913200-A	NR	4E-59		0.1162	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr1	176521654	176521655	rs10913200	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.2	PAPPA2	rs10913200-A	0.0285	2E-18		0.0488	[0.038-0.06] unit decrease	Affymetrix [18391927] (imputed)	N
1931	chr1	176521654	176521655	rs10913200	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	1q25.2	PAPPA2	rs10913200-G	0.971319	4E-7		0.047651	[0.029-0.066] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1931	chr1	176521654	176521655	rs10913200	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q25.2	PAPPA2	rs10913200-G	0.972127	2E-10		0.051218	[0.035-0.067] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1931	chr1	176530657	176530658	rs68096351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs68096351-G	NR	1E-9		0.0452	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1931	chr1	176535137	176535138	rs11806613	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	1q25.2	NR	rs11806613-?	NR	5E-6		0.0874	[0.05-0.125] unit decrease	Illumina [at least 560000] (imputed)	N
1931	chr1	176541124	176541125	rs10753130	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	1q25.2	PAPPA2	rs10753130-T	0.1652	6E-9		0.017611401	[0.012-0.024] unit increase	Affymetrix [11514463] (imputed)	N
1932	chr1	176559773	176559774	rs75244792	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		PAPPA2	rs75244792-?	NR	5E-7	(male)	0.730611	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1932	chr1	176563259	176563260	rs10913213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q25.2		rs10913213-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1932	chr1	176579480	176579481	rs71129578	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q25.2		rs71129578-T	0.1431	4E-8		0.0887	[0.057-0.12] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1932	chr1	176622197	176622198	rs6689901	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q25.2	NR	rs6689901-?	NR	6E-8				Affymetrix [NR]	N
1932	chr1	176636382	176636382	rs200587040	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1q25.2	NR	rs200587040-CA	0.9285	8E-7		0.7454	[0.45-1.04] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1932	chr1	176640106	176640107	rs201111080	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	1q25.2	PAPPA2	rs201111080-T	0.002	5E-7		0.503	[0.31-0.7] unit decrease	Illumina [at least 81396]	N
1932	chr1	176649180	176649181	rs10454444	25948407	Kertai MD	2015-05-06	BMJ Open	Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.	Perioperative myocardial infarction in coronary artery bypass surgery	112 cases, 1,321 controls	113 European ancestry cases, 509 European ancestry controls		PAPPA2	rs10454444-?	NR	2E-6		2.17	[1.59-3.03]	Illumina [534390]	N
1932	chr1	176659020	176659021	rs115607791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs115607791-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1932	chr1	176662648	176662649	rs61823000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q25.2		rs61823000-A	NR	2E-11		0.0326	[0.023-0.042] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1932	chr1	176664439	176664440	rs61823001	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q25.2	PAPPA2	rs61823001-G	0.9507	2E-10		0.3774	[0.26-0.49] mmHg increase	Affymetrix [NR] (imputed)	N
1932	chr1	176664439	176664440	rs61823001	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q25.2	PAPPA2	rs61823001-A		4E-8		0.312	unit increase	Affymetrix [at least 2696785] (imputed)	N
1932	chr1	176672284	176672285	rs791030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs791030-A	NR	4E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1932	chr1	176682172	176682173	rs6425393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.2	NR	rs6425393-G	0.168766	2E-9		0.13919	[0.094-0.184] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1933	chr1	176688054	176688055	rs12140861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs12140861-C	NR	1E-9		0.0441539	[0.03-0.058] unit decrease	Affymetrix [323123] (imputed)	N
1933	chr1	176688346	176688347	rs868568044	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.2	NR	rs868568044-G	0.01394	3E-9	(PRDX3)	1.722	NR unit increase	Illumina [1671387] (imputed)	N
1933	chr1	176688346	176688347	rs868568044	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.2	NR	rs868568044-G	0.01394	2E-8	(ALDH5A1)	0.2991	NR unit increase	Illumina [1671387] (imputed)	N
1933	chr1	176703821	176703822	rs12117539	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs12117539-G	NR	4E-16		0.0247	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1933	chr1	176748135	176748136	rs4652192	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q25.2	PAPPA2	rs4652192-C	0.808714	2E-9		0.0150196	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1933	chr1	176775677	176775678	rs6656137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs6656137-T	NR	3E-11		0.0204642	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1933	chr1	176787749	176787750	rs5778914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q25.2		rs5778914-C	NR	7E-14		0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1933	chr1	176787749	176787750	rs5778914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q25.2		rs5778914-C	NR	3E-54		0.0205	[0.018-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1933	chr1	176787749	176787750	rs5778914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q25.2		rs5778914-C	0.704055	2E-21		0.0208291	[0.017-0.025] unit increase	Illumina [13479295] (imputed)	N
1933	chr1	176787749	176787750	rs5778914	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q25.2	PAPPA2	rs5778914-?	NR	3E-24		0.031421646	[0.025-0.037] unit increase	Illumina [27896057] (imputed)	N
1933	chr1	176787749	176787749	rs773626605	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.2	PAPPA2	rs773626605-CT	0.4525	2E-52		0.0287	[0.025-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
1933	chr1	176789614	176789615	rs76808343	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	1q25.2		rs76808343-?	NR	4E-8		1.0085	[0.65-1.37] unit increase	Affymetrix [NR] (imputed)	N
1933	chr1	176792248	176792249	rs1325598	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q25.2	PAPPA2	rs1325598-A	0.24	5E-11		0.044	[0.03-0.058] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1933	chr1	176792248	176792249	rs1325598	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q25.2	PAPPA2	rs1325598-A	0.43	1E-9		0.022	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1933	chr1	176794065	176794066	rs1325596	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.2	NR	rs1325596-?	NR	5E-6		0.02921844	[0.017-0.042] unit increase	Illumina [34656550] (imputed)	N
1933	chr1	176811872	176811873	rs1044299	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q25.2	NR	rs1044299-T	0.544797	3E-11		0.0436895	[0.03-0.057] unit increase	Affymetrix [17914406] (imputed)	N
1933	chr1	176811872	176811873	rs1044299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q25.2		rs1044299-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1933	chr1	176811872	176811873	rs1044299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs1044299-?	NR	2E-69				NR [~ 8900000] (imputed)	N
1933	chr1	176815194	176815194	rs765338709	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q25.2	NR	rs765338709-G	0.431141	2E-8		0.0529194	[0.034-0.072] unit increase	Affymetrix [21375087] (imputed)	N
1934	chr1	176819686	176819687	rs144003758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.2	PAPPA2	rs144003758-T	NR	2E-12		0.0709245	[0.051-0.091] unit decrease	Affymetrix [323123] (imputed)	N
1934	chr1	176884265	176884266	rs10913276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.2	ASTN1	rs10913276-C	NR	4E-9		0.0312269	[0.021-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1934	chr1	176891432	176891433	rs6688579	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	1q25.2	ASTN1	rs6688579-?	NR	8E-6		1.13	[0.47-1.79] unit increase	Illumina [at least 13000000] (imputed)	N
1934	chr1	176931520	176931521	rs112815117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs112815117-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1934	chr1	176935710	176935711	rs10798489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q25.2	NR	rs10798489-C	NR	4E-54		0.0657	[0.057-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr1	177026982	177026983	rs7548151	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q25.2	NR	rs7548151-A	0.0836	4E-9		0.0125	[0.0084-0.0166] unit increase	NR [7666894] (imputed)	N
1935	chr1	177039371	177039372	rs6697602	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	1q25.2	NR	rs6697602-G	0.083	6E-9		1.056	[1.04-1.07]	NR [5276842] (imputed)	N
1936	chr1	177091794	177091795	rs16850767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q25.2	Intergenic	rs16850767-C	0.894	5E-10		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1936	chr1	177091794	177091795	rs16850767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.2	Intergenic	rs16850767-T	0.1066	5E-10	(MTAG)	0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1936	chr1	177094873	177094874	rs227507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q25.2	Intergenic	rs227507-A	0.8938	7E-12	(MTAG)	0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1936	chr1	177096283	177096284	rs57530364	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q25.2	Intergenic	rs57530364-T	0.8794	2E-8		0.0197	[0.013-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1936	chr1	177116837	177116838	rs76850981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs76850981-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1937	chr1	177276005	177276006	rs16851048	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1q25.2	NR	rs16851048-?	NR	2E-7				Illumina [up to 5582932] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q25.2	NR	rs6670165-?	NR	2E-9		1.06833	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q25.2	FAM5B	rs6670165-T	NR	8E-8	(EA)	1.0771	[1.05-1.1]	Illumina [6627481] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q25.2	FAM5B	rs6670165-T	NR	4E-11		1.081	[1.06-1.1]	Illumina [6627481] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q25.2	FAM5B	rs6670165-T	NR	3E-9		1.073	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q25.2	NR	rs6670165-T	NR	5E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
1937	chr1	177280120	177280121	rs6670165	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1q25.2	FAM5B	rs6670165-T	0.184	4E-8		1.075	[1.047-1.103]	Affymetrix, Illumina [9005918] (imputed)	N
1937	chr1	177306386	177306387	rs17659437	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1q25.2	NR	rs17659437-T	0.8559	2E-8		0.091602124	[0.059-0.124] unit decrease	NR [NR]	N
1937	chr1	177306386	177306387	rs17659437	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	1q25.2	BRINP2, LOC102724661	rs17659437-?		4E-9		1.0869565	[1.05-1.12]	Affymetrix, Illumina [NR]	N
1937	chr1	177309489	177309490	rs4650963	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1q25.2	BRINP2	rs4650963-?	NR	1E-8		1.056	[1.04-1.07]	Illumina [8000000] (imputed)	N
1937	chr1	177323123	177323124	rs6663086	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q25.2	NR	rs6663086-C	0.16	9E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1937	chr1	177334781	177334782	rs4233170	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1q25.2	LOC102724661	rs4233170-G	0.0946	2E-7		0.0132	[0.0083-0.0181] unit increase	Affymetrix [~ 7740000] (imputed)	N
1938	chr1	177363012	177363013	rs736840	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1q25.2	FAM5B, SEC16B	rs736840-G	0.094915	8E-8		0.0491	[0.03-0.069] unit increase	Illumina [1220000] (imputed)	N
1938	chr1	177370032	177370033	rs16851203	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1q25.2	NR	rs16851203-C	NR	2E-9		1.0416667		NR [NR] (imputed)	N
1938	chr1	177374762	177374763	rs142462188	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	1q25.2	Intergenic	rs142462188-?		1E-8				NR [6786993] (imputed)	N
1938	chr1	177387828	177387829	rs9943212	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.2	NR	rs9943212-T	0.02265	3E-8	(CES1)	7.72	NR unit increase	Illumina [1671387] (imputed)	N
1938	chr1	177404509	177404510	rs146949893	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	1q25.2	RP1-35C21.2	rs146949893-C	0.0031	4E-8		0.039000772	[0.025-0.053] m increase	Illumina [24111857] (imputed)	N
1938	chr1	177411321	177411322	rs80065677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.2	Intergenic	rs80065677-T	0.0104	5E-8	(MTAG)	0.0449	[0.029-0.061] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1938	chr1	177428017	177428018	rs72710803	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1q25.2	NR	rs72710803-C	0.0879	1E-10		1.0245901	[1.02-1.03]	NR [8098588] (imputed)	N
1938	chr1	177439120	177439121	rs568799986	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q25.2	NR	rs568799986-T	0.0869	2E-7		0.0109	[0.0068-0.015] unit increase	NR [7666894] (imputed)	N
1939	chr1	177568798	177568799	rs16851585	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q25.2	intergenic	rs16851585-?	0.08	5E-6	(EA)	1.3	[1.16-1.45]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1939	chr1	177572133	177572134	rs10753165	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q25.2	NR	rs10753165-?	NR	7E-46				Affymetrix [NR]	N
1939	chr1	177573443	177573444	rs77525287	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	1q25.2	NR	rs77525287-?		6E-6		5.94	[NR]	Illumina [NR] (imputed)	N
1939	chr1	177596480	177596481	rs12566910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs12566910-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1939	chr1	177602067	177602068	rs1252068	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	1q25.2	LOC400796, SEC16B	rs1252068-?	0.35	9E-8		18.61	unit decrease	Illumina [120975] (imputed)	N
1940	chr1	177613862	177613863	rs12140710	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	1q25.2		rs12140710-G	0.3322	4E-6		0.69	[0.59-0.81]	Illumina [248101]	N
1940	chr1	177621200	177621201	rs1572511	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1q25.2	SEC16B	rs1572511-?		3E-6				Illumina [859311]	N
1940	chr1	177649848	177649849	rs1923630	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	1q25.2		rs1923630-A	0.3096	1E-6		0.66	[0.57-0.79]	Illumina [248101]	N
1940	chr1	177652461	177652462	rs1885646	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	1q25.2	intergenic	rs1885646-A	0.15	4E-6		0.017	NR unit increase	Illumina [1231747]	N
1940	chr1	177721830	177721831	rs12131792	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1q25.2	SEC16B	rs12131792-A	0.038	7E-6	(EA)	0.241	[0.14-0.35] unit increase	Illumina [NR] (imputed)	N
1940	chr1	177722906	177722907	rs12140439	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	1q25.2	SEC16B	rs12140439-C	0.31	1E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
1941	chr1	177743302	177743303	rs143599985	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q25.2	NR	rs143599985-?	NR	1E-9				Illumina [7760689] (imputed)	N
1941	chr1	177751338	177751339	rs113466017	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q25.2	SEC16B	rs113466017-C	NR	2E-6	(resting duration)	0.5584	[0.33-0.79] unit decrease	Affymetrix [7141204] (imputed)	N
1941	chr1	177751809	177751810	rs978992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs978992-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1941	chr1	177756503	177756504	rs1923626	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (C9orf72 mutation interaction)	4,243 European ancestry cases	NA	1q25.2	SEC16B	rs1923626-?	0.47	2E-6		1.25	[1.14-1.37]	Illumina [254145]	N
1941	chr1	177759148	177759149	rs9970167	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q25.2	Intergenic	rs9970167-A	0.2368	3E-8	(MTAG)	0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1941	chr1	177759644	177759645	rs10913420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q25.2	Intergenic	rs10913420-T	0.1706	2E-10	(MTAG)	0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1941	chr1	177759644	177759645	rs10913420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q25.2	Intergenic	rs10913420-C	0.8294	7E-9		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1941	chr1	177759644	177759645	rs10913420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.2	Intergenic	rs10913420-T	0.1708	1E-10	(MTAG)	0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1941	chr1	177759644	177759645	rs10913420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.2	Intergenic	rs10913420-T	0.1744	4E-8	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1941	chr1	177760917	177760918	rs9970077	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q25.2	SEC16B	rs9970077-A	NR	5E-8		1.068	[1.04-1.09]	Illumina [6627481] (imputed)	N
1941	chr1	177760917	177760918	rs9970077	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q25.2	SEC16B	rs9970077-A	NR	5E-7	(EA)	1.0756	[1.05-1.1]	Illumina [6627481] (imputed)	N
1941	chr1	177760917	177760918	rs9970077	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q25.2	intergenic	rs9970077-A	NR	2E-6		1.058	[1.03-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1941	chr1	177761108	177761109	rs12748436	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q25.2	SEC16B	rs12748436-C	0.9237	4E-9		0.015605	[0.01-0.021] unit decrease	Affymetrix [12370749]	N
1941	chr1	177764705	177764706	rs6664268	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	1q25.2	BRINP2, SEC16B	rs6664268-C	0.22	8E-7	(Percentage fat mass)	1.35	[0.82-1.88] unit decrease	Illumina [125878]	N
1941	chr1	177764705	177764706	rs6664268	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	1q25.2	BRINP2, SEC16B	rs6664268-C	0.22	1E-6	(Fat mass)	1.8	[1.07-2.53] unit decrease	Illumina [125878]	N
1941	chr1	177766020	177766021	rs75608493	31591465	Bigdeli TB	2019-10-07	Mol Psychiatry	Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry.	Schizophrenia or schizoaffective disorder	6,152 African ancestry cases, 1,234 Latino cases, 34,241 European and East Asian ancestry cases, 3,918 African ancestry controls, 3,090 Latino controls, 45,604 European and East Asian ancestry controls, 1,235 European ancestry trios	NA	1q25.2	NR	rs75608493-?	NR	5E-8				Illumina [NR] (imputed)	N
1941	chr1	177766020	177766021	rs75608493	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q25.2	NR	rs75608493-C	NR	3E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
1941	chr1	177777482	177777483	rs56278732	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1q25.2	RP11-63B19.1	rs56278732-A	0.782	6E-6		0.0633	[0.036-0.091] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1941	chr1	177778146	177778147	rs113741607	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	1q25.2	NR	rs113741607-?	NR	4E-6		0.1023	[0.059-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
1941	chr1	177783643	177783644	rs4652270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs4652270-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1941	chr1	177809132	177809133	rs12735657	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	1q25.2	SEC16B	rs12735657-C	0.204588	7E-19		1.15	[1.12-1.19]	Illumina [~ 41266535] (imputed)	N
1941	chr1	177814913	177814914	rs3131310	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	1q25.2		rs3131310-A	0.9371	4E-8		0.1249	[0.08-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1941	chr1	177830320	177830321	rs144847043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs144847043-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
1941	chr1	177839611	177839612	rs10489881	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs10489881-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1941	chr1	177841684	177841685	rs6670873	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	1q25.2		rs6670873-C	NR	9E-6		0.00433796	[0.0024-0.0062] years increase	NR [7400000] (imputed)	N
1941	chr1	177841684	177841685	rs6670873	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	1q25.2		rs6670873-C	NR	1E-6		0.00661959	[0.0039-0.0093] years increase	NR [7400000] (imputed)	N
1941	chr1	177841684	177841685	rs6670873	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1q25.2		rs6670873-C	NR	9E-10		0.0252984	[0.017-0.033] years increase	NR [7400000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q25.2		rs633715-C	NR	6E-11		0.0491	[0.034-0.064] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1941	chr1	177852579	177852580	rs633715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	1q25.2		rs633715-C	0.225415	3E-32		0.044864	[0.037-0.052] unit increase	Illumina [13479178] (imputed)	N
1941	chr1	177852579	177852580	rs633715	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1q25.2	NR	rs633715-?	NR	2E-11		0.05912278	[0.042-0.076] unit increase	Illumina [32062178] (imputed)	N
1941	chr1	177852579	177852580	rs633715	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q25.2	LOC101928778, SEC16B	rs633715-C	0.225	1E-33	(Japanese)	0.049	[0.041-0.057] unit increase	Illumina [6108953] (imputed)	N
1941	chr1	177852579	177852580	rs633715	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.2	SEC16B	rs633715-C	0.19710000000000005	5E-6	(EA, women)	0.06	[0.034-0.086] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.2	SEC16B	rs633715-C	0.19810000000000005	2E-21	(EA)	0.0505	[0.04-0.061] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs633715-?	NR	2E-27	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs633715-C	0.19810000000000005	5E-24	(EA, women)	0.0616	[0.05-0.074] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs633715-T	0.8023	3E-23	(EA)	0.0431	[0.035-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1941	chr1	177852579	177852580	rs633715	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs633715-T	0.8023	2E-8	(EA, men)	0.0341	[0.022-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1941	chr1	177852579	177852580	rs633715	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs633715-T	0.8023	2E-19	(EA, women)	0.0507	[0.04-0.062] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1941	chr1	177852579	177852580	rs633715	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1q25.2	SEC16B	rs633715-C	0.2	7E-20	(Overweight)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1q25.2	SEC16B	rs633715-C	0.19	9E-23	(Obesity class I)	1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	1q25.2	SEC16B	rs633715-C	0.19	4E-19	(Obesity class II)	1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	1q25.2	SEC16B	rs633715-C	0.19	5E-12		1.21	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1941	chr1	177852579	177852580	rs633715	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	1q25.2	SEC16B	rs633715-C	0.20	2E-8		2.6	[1.62-3.58] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1941	chr1	177855516	177855517	rs516636	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1q25.2	NR	rs516636-?	NR	1E-11		0.05876008	[0.042-0.076] unit increase	Illumina [32062178] (imputed)	N
1941	chr1	177855516	177855517	rs516636	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	1q25.2	SEC16B	rs516636-A	0.22	3E-9		0.05	[0.034-0.066] unit increase	Illumina [2178018] (imputed)	N
1941	chr1	177864135	177864136	rs1336780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1q25.2		rs1336780-A	0.773929	2E-30		0.037079	[0.031-0.043] unit decrease	Illumina [13479924] (imputed)	N
1941	chr1	177864553	177864554	rs10798580	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs10798580-?	NR	3E-21				Affymetrix [~ 8270000] (imputed)	N
1941	chr1	177864553	177864554	rs10798580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs10798580-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1942	chr1	177872904	177872905	rs571567	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	1q25.2	FAM5B, SEC16B	rs571567-?	NR	5E-11		0.036	[0.025-0.047] unit increase	Illumina [12039492]	N
1942	chr1	177873209	177873210	rs574367	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1q25.2	NR	rs574367-?	NR	1E-11		0.0586033	[0.042-0.076] unit increase	Illumina [32062178] (imputed)	N
1942	chr1	177873209	177873210	rs574367	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1q25.2	SEC16B	rs574367-T	0.2104	5E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix [~ 7740000] (imputed)	N
1942	chr1	177873209	177873210	rs574367	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	1q25.2	SEC16B	rs574367-T	0.21	2E-19		0.058	[0.045-0.071] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1942	chr1	177873382	177873383	rs576101	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.2	intergenic	rs576101-A	0.3249	1E-16		0.0166	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1942	chr1	177875513	177875514	rs527248	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	1q25.2	SEC16B	rs527248-?		3E-6				NR [327872]	N
1942	chr1	177875823	177875824	rs72702742	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs72702742-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177878932	177878933	rs532504	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1q25.2	SEC16B	rs532504-A	0.213	7E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1942	chr1	177878932	177878933	rs532504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q25.2	SEC16B	rs532504-A	0.1993	2E-7		0.0444	[0.028-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1942	chr1	177878932	177878933	rs532504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q25.2	SEC16B	rs532504-A	0.1993	2E-7		0.0444	[0.028-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1942	chr1	177878932	177878933	rs532504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1q25.2	SEC16B	rs532504-A	0.1985	2E-7		0.0601	[0.038-0.083] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1942	chr1	177885761	177885762	rs630372	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1q25.2	SEC16B	rs630372-A	0.2218	5E-9		0.0452	[0.03-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1942	chr1	177889024	177889025	rs539515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q25.2		rs539515-C	NR	2E-92		0.0468	[0.042-0.051] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1942	chr1	177889024	177889025	rs539515	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q25.2		rs539515-C	0.21	1E-35				NR [NR] (imputed)	N
1942	chr1	177889024	177889025	rs539515	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q25.2		rs539515-C	0.21	9E-54		0.028	% increase	NR [NR] (imputed)	N
1942	chr1	177889024	177889025	rs539515	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q25.2	NR	rs539515-C	0.2066	5E-15		0.0358	[0.027-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1942	chr1	177889024	177889025	rs539515	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q25.2	SEC16B	rs539515-A	0.795046	8E-71		0.0301588	[0.027-0.033] unit decrease	Affymetrix [12370749]	N
1942	chr1	177889024	177889025	rs539515	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs539515-?	NR	6E-90				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177889024	177889025	rs539515	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	1q25.2	NR	rs539515-A	NR	4E-14	(EA)	0.1872	[0.14-0.24] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1942	chr1	177889024	177889025	rs539515	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1q25.2	NR	rs539515-C	0.2076	1E-35		0.037988853	[0.032-0.044] unit increase	Affymetrix [10549349] (imputed)	N
1942	chr1	177889024	177889025	rs539515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q25.2		rs539515-?	NR	1E-85				NR [~ 8900000] (imputed)	N
1942	chr1	177889024	177889025	rs539515	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q25.2	SEC16B	rs539515-C	0.1981	2E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1942	chr1	177889024	177889025	rs539515	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1q25.2	SEC16B	rs539515-A	0.7924	3E-21		0.003	[0.0024-0.0036] unit increase	Affymetrix [15275733] (imputed)	N
1942	chr1	177889479	177889480	rs543874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q25.2		rs543874-G	NR	2E-91		0.0406	[0.037-0.045] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1942	chr1	177889479	177889480	rs543874	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	1q25.2	NR	rs543874-?	NR	3E-9		10.209	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
1942	chr1	177889479	177889480	rs543874	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1q25.2	SEC16B	rs543874-G	0.19	2E-15		0.079	[0.059-0.099] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1942	chr1	177889479	177889480	rs543874	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q25.2	SEC16B	rs543874-A	0.794752	6E-163		0.0471181	[0.044-0.051] unit decrease	Affymetrix [12370749]	N
1942	chr1	177889479	177889480	rs543874	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q25.2	NR	rs543874-A	0.792504	6E-10		0.0153465	[0.01-0.02] unit decrease	NR [NR]	N
1942	chr1	177889479	177889480	rs543874	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1q25.2	NR	rs543874-?	NR	6E-17		0.06376734	[0.049-0.079] unit increase	Illumina [32062178] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	5E-24		0.27501	[0.22-0.33] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	4E-10	(male)	0.26972	[0.19-0.35] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	1E-21	(female)	0.2833	[0.23-0.34] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	7E-16	(female)	0.34196	[0.26-0.43] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	5E-10	(male)	0.19983	[0.14-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.2	NR	rs543874-?	NR	3E-24		0.26504	[0.21-0.32] unit increase	Affymetrix [7794483] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q25.2	NA	rs543874-A	0.7802	8E-22		0.0203	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q25.2	NR	rs543874-A	0.7802	8E-22		0.0203	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	1q25.2	NR	rs543874-A	0.7802	8E-22		0.0203	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q25.2	NA	rs543874-A	0.7786	3E-125		0.0479	[0.044-0.052] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q25.2	NA	rs543874-A	0.7786	3E-125		0.0479	[0.044-0.052] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1q25.2	NA	rs543874-A	0.7786	3E-125		0.0479	[0.044-0.052] unit decrease	NR [~ 27400000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q25.2	NR	rs543874-A	NR	4E-52		0.048	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1942	chr1	177889479	177889480	rs543874	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	1q25.2	ENSG00000254154	rs543874-G	0.21	4E-20		0.004	[0.0032-0.0048] unit decrease	Affymetrix [15275733] (imputed)	N
1942	chr1	177889479	177889480	rs543874	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	1q25.2	SEC16B	rs543874-A		1E-21		0.0091	[0.0071-0.0111] unit decrease	Illumina [at least 200000]	N
1942	chr1	177889479	177889480	rs543874	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q25.2	LOC101928778, SEC16B	rs543874-G	0.2	7E-62		0.048	[0.042-0.054] unit increase	Illumina [6108953] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19789999999999996	6E-8	(women)	0.0638	[0.041-0.087] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19399999999999995	1E-9	(EA)	0.0593	[0.04-0.078] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19240000000000002	2E-12		0.0648	[0.047-0.083] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19730000000000003	2E-23	(women)	0.0622	[0.05-0.074] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1956	2E-24		0.0512	[0.041-0.061] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19289999999999996	2E-19	(EA,women)	0.0606	[0.047-0.074] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.2	SEC16B	rs543874-G	0.19210000000000005	1E-6	(men)	0.0366	[0.022-0.051] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-?	NR	7E-23	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-?	NR	6E-29	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-?	NR	5E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-?	NR	3E-34				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-?	NR	1E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1956	8E-29	(women)	0.063	[0.052-0.074] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1956	2E-34		0.054	[0.045-0.063] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1956	1E-10	(men)	0.0419	[0.029-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1926	6E-28	(EA)	0.0515	[0.042-0.061] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.2	SEC16B	rs543874-G	0.1926	1E-8	(EA, men)	0.0398	[0.026-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	9E-31	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	6E-35				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	2E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	5E-10		0.0527	[0.036-0.069] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	1E-8	(women)	0.065	[0.043-0.087] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	6E-28		0.0502	[0.041-0.059] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	4E-25	(women)	0.0597	[0.048-0.071] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	2E-8	(men)	0.0373	[0.024-0.05] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	3E-31	(women)	0.0601	[0.05-0.07] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	2E-9	(men)	0.0353	[0.024-0.047] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.2	SEC16B	rs543874-A	0.8024	1E-35		0.0497	[0.042-0.058] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	1q25.2	SEC16B	rs543874-G	0.249	6E-46		0.055	[0.039-0.071] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	1q25.2	SEC16B	rs543874-G	0.249	4E-12	(AA, Women)	0.064	[0.046-0.082] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1942	chr1	177889479	177889480	rs543874	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	1q25.2	SEC16B	rs543874-G	0.249	2E-13	(AA)	0.055	[0.039-0.071] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	1q25.2	SEC16B	rs543874-G	NR	2E-22	(additive model)	0.049	[0.039-0.059] unit increase	NR [9288881] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	1q25.2	SEC16B	rs543874-G	0.19	6E-6	(women)	0.037	[0.021-0.053] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	1q25.2	SEC16B	rs543874-G	0.19	5E-8		0.032	[0.02-0.044] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	1q25.2	SEC16B	rs543874-G	0.19	5E-7	(European)	0.031	[0.019-0.043] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1q25.2	SEC16B	rs543874-G	0.2	2E-19		0.077	[0.059-0.095] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	1q25.2	NR	rs543874-G	NR	2E-17				Affymetrix, Illumina [2499691] (imputed)	N
1942	chr1	177889479	177889480	rs543874	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q25.2	NR	rs543874-A	0.80425773765243	3E-46		0.048511162	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177889479	177889480	rs543874	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q25.2	SEC16B	rs543874-G	0.195	2E-40		0.05	[0.042-0.057] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1942	chr1	177889479	177889480	rs543874	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q25.2	SEC16B	rs543874-G	0.194	1E-33	(EA, women)	0.06	[0.051-0.07] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1942	chr1	177889479	177889480	rs543874	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q25.2	SEC16B	rs543874-G	0.193	3E-35	(EA)	0.048	[0.041-0.056] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1942	chr1	177889479	177889480	rs543874	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q25.2	SEC16B	rs543874-G	0.192	3E-11	(EA, men)	0.034	[0.024-0.044] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1942	chr1	177889479	177889480	rs543874	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs543874-A	0.8099	6E-8	(EA, men)	0.0338	[0.022-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1942	chr1	177889479	177889480	rs543874	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs543874-A	0.8099	2E-23	(EA)	0.0449	[0.036-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1942	chr1	177889479	177889480	rs543874	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.2	SEC16B	rs543874-A	0.8099	1E-20	(EA,women)	0.0547	[0.043-0.066] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1942	chr1	177889479	177889480	rs543874	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1q25.2	SEC16B	rs543874-A	0.8	1E-15		0.05	[0.038-0.062] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1942	chr1	177889479	177889480	rs543874	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	1q25.2	SEC16B	rs543874-G	0.19	4E-11		0.081	[0.059-0.103] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1942	chr1	177889479	177889480	rs543874	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	1q25.2	SEC16B	rs543874-G	0.25	2E-13	(AA and Sub-Saharan)	0.06	[0.044-0.076] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
1942	chr1	177889479	177889480	rs543874	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	1q25.2	SEC16B	rs543874-G	0.19	4E-23		0.22	[0.16-0.28] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1942	chr1	177894029	177894030	rs144662465	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs144662465-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177894286	177894287	rs506589	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q25.2	SEC16B	rs506589-?	NR	4E-8		0.0164985	[0.011-0.022] unit increase	Affymetrix [25921788] (imputed)	N
1942	chr1	177894286	177894287	rs506589	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	1q25.2	SEC16B	rs506589-C	0.180745	3E-20		1.28	[1.21-1.35]	Illumina [41266535] (imputed)	N
1942	chr1	177894286	177894287	rs506589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q25.2		rs506589-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1942	chr1	177894590	177894591	rs509325	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q25.2	SEC16B	rs509325-?	NR	5E-9	(female)	0.0238806	[0.016-0.032] unit increase	Affymetrix [25921788] (imputed)	N
1942	chr1	177897974	177897975	rs8030	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1q25.2	SEC16B	rs8030-T	0.2991	1E-7		0.0093	[0.0058-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
1942	chr1	177898798	177898799	rs623479	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs623479-?	NR	4E-29				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177899120	177899121	rs545608	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q25.2	NR	rs545608-G	0.8024	7E-10		0.0355	[0.024-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1942	chr1	177899120	177899121	rs545608	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	1q25.2	SEC16B	rs545608-?	NR	4E-17				NR [5554549] (imputed)	N
1942	chr1	177899120	177899121	rs545608	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	1q25.2	SEC16B	rs545608-?	NR	2E-63				NR [5554549] (imputed)	N
1942	chr1	177899120	177899121	rs545608	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	1q25.2	SEC16B	rs545608-G	0.728751	1E-8		1.16	[1.10-1.23]	Illumina [9332516] (imputed)	N
1942	chr1	177899120	177899121	rs545608	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.2	SEC16B	rs545608-C	0.205213	6E-12	(females)	0.02697	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1942	chr1	177899120	177899121	rs545608	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.2	SEC16B	rs545608-C	0.205213	3E-8		0.01392	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1942	chr1	177899120	177899121	rs545608	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.2	SEC16B	rs545608-C	0.205213	2E-36	(females)	0.04848	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1942	chr1	177899120	177899121	rs545608	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.2	SEC16B	rs545608-C	0.205213	2E-23	(males)	0.02684	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1942	chr1	177899120	177899121	rs545608	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.2	SEC16B	rs545608-C	0.205213	1E-39		0.03866	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1942	chr1	177899120	177899121	rs545608	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1q25.2	SEC16B, RP4-798P15.3	rs545608-C	0.1927	4E-9		0.0513	[0.034-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1942	chr1	177900097	177900098	rs575908	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q25.2	NR	rs575908-C	0.2891	3E-6	(EA)	0.032	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1942	chr1	177902752	177902753	rs591120	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1q25.2	SEC16B	rs591120-C	0.444	5E-38		0.023	[0.019-0.027] unit increase	Illumina [246328]	N
1942	chr1	177902752	177902753	rs591120	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	1q25.2	SEC16B, RASAL2, LOC7030102, RASAL2-AS1	rs591120-C	0.2	7E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177902752	177902753	rs591120	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	1q25.2	SEC16B, RASAL2, LOC7030102, RASAL2-AS1	rs591120-C	0.2	5E-14		0.033	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177902752	177902753	rs591120	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q25.2	SEC16B, RASAL2, LOC7030102, RASAL2-AS1	rs591120-C	0.2	2E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1942	chr1	177904494	177904495	rs10489882	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs10489882-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177913518	177913519	rs10913469	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1q25.2	SEC16B	rs10913469-C	0.207314	2E-9		0.0482641	[0.033-0.064] unit increase	Affymetrix [9463307] (imputed)	N
1942	chr1	177913518	177913519	rs10913469	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	1q25.2	SEC16B	rs10913469-?	NR	4E-14				NR [5554549] (imputed)	N
1942	chr1	177913518	177913519	rs10913469	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	1q25.2	SEC16B	rs10913469-?	NR	5E-44				NR [5554549] (imputed)	N
1942	chr1	177913518	177913519	rs10913469	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	1q25.2	NR	rs10913469-?	NR	8E-10		0.04479899	[0.03-0.059] unit increase	Illumina [32062178] (imputed)	N
1942	chr1	177913518	177913519	rs10913469	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1q25.2	SEC16B, RASAL2	rs10913469-C	0.2	1E-8		3.82	[2.51-5.13] percentage SD increase	Illumina [305846]	N
1942	chr1	177913518	177913519	rs10913469	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	1q25.2	SEC16B, RASAL2	rs10913469-C	0.2	6E-8		3.36	[2.14-4.58] % SD increase	Illumina [305846]	N
1942	chr1	177914727	177914728	rs560415	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs560415-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177924577	177924578	rs61816282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs61816282-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177929553	177929554	rs10913472	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	1q25.2	SEC16B	rs10913472-?	NR	9E-6	(AA)			Illumina [up to 666531]	N
1942	chr1	177933828	177933829	rs10798586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q25.2		rs10798586-A	0.515958	3E-8		0.0216139	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1942	chr1	177933828	177933829	rs10798586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs10798586-A	0.515958	1E-9		0.0242651	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1942	chr1	177933828	177933829	rs10798586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q25.2		rs10798586-A	0.515958	3E-8		0.0214229	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1942	chr1	177933828	177933829	rs10798586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q25.2		rs10798586-A	0.515958	3E-8		0.0215326	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1942	chr1	177933828	177933829	rs10798586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs10798586-A	0.515958	2E-8		0.0216394	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1942	chr1	177934590	177934591	rs6679120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs6679120-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177938436	177938437	rs6682862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q25.2		rs6682862-G	0.832534	2E-8		0.0295061	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1942	chr1	177938436	177938437	rs6682862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q25.2		rs6682862-A	NR	1E-16		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1942	chr1	177938436	177938437	rs6682862	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q25.2	SEC16B	rs6682862-G	0.833301	1E-16		0.00550413	[0.0042-0.0069] unit decrease	Affymetrix [13995440] (imputed)	N
1942	chr1	177938436	177938437	rs6682862	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q25.2	SEC16B	rs6682862-A	0.17	3E-14		7.61	z-score increase	Affymetrix [4311822] (imputed)	N
1942	chr1	177943590	177943591	rs2862300	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q25.2	SEC16B	rs2862300-A	0.771366	1E-22		0.00262564	[0.0021-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
1942	chr1	177949887	177949888	rs7517442	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q25.2		rs7517442-C	0.870406	2E-8		0.032972	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1942	chr1	177967004	177967005	rs35308250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs35308250-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177978858	177978859	rs79295525	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.2	NR	rs79295525-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1942	chr1	177992624	177992625	rs1340183	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs1340183-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1942	chr1	177994471	177994472	rs946819	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs946819-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1942	chr1	177995469	177995470	rs1415082	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs1415082-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1942	chr1	177995583	177995584	rs1360995	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs1360995-?	NR	6E-9				Affymetrix [NR] (imputed)	N
1942	chr1	177995609	177995610	rs1415083	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs1415083-?	NR	5E-9				Affymetrix [NR] (imputed)	N
1943	chr1	178017307	178017308	rs58766730	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.2		rs58766730-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1943	chr1	178026293	178026294	rs7520853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.2	NR	rs7520853-T	0.217894	2E-10		0.110467	[0.077-0.144] SD units increase	Affymetrix, Illumina [36864690] (imputed)	N
1943	chr1	178028710	178028711	rs4652291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	1q25.2	NR	rs4652291-C	0.253309	2E-11		0.113368	[0.08-0.146] SD units increase	Affymetrix, Illumina [36456987] (imputed)	N
1943	chr1	178039225	178039226	rs16852403	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	1q25.2	NR	rs16852403-?	NR	4E-6		0.0503	[0.029-0.072] unit decrease	Illumina [at least 560000] (imputed)	N
1943	chr1	178064546	178064547	rs75718887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q25.2	RASAL2	rs75718887-T	0.218342	1E-11		0.018605972	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1943	chr1	178071158	178071158	rs11404276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q25.2		rs11404276-AT	NR	1E-9		0.0182	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1943	chr1	178071169	178071170	rs12143791	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	1q25.2		rs12143791-?	NR	7E-6				Illumina [1365315]	N
1943	chr1	178071169	178071170	rs12143791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q25.2	NR	rs12143791-G	0.409772	3E-10		0.01185	[0.0082-0.0155] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1943	chr1	178100218	178100219	rs186197500	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	1q25.2	RASAL2	rs186197500-A	NR	7E-7	(Japanese)	1.8491876	[1.45126296159233-2.35622325686603]	Illumina [at least 6195093] (imputed)	N
1943	chr1	178118750	178118751	rs143934543	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	NR	rs143934543-A	0.02	6E-23	(Angiopoietin-related protein 1, ANGPTL1.11142.11.3)	0.96	[0.76-1.16] unit increase	Affymetrix [10572788] (imputed)	N
1944	chr1	178142207	178142208	rs316274	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q25.2	RASAL2	rs316274-?		8E-7	(AA)			Illumina [NR]	N
1944	chr1	178221224	178221225	rs519464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.2	NR	rs519464-G	0.743743	8E-12				Affymetrix, Illumina [24649327] (imputed)	N
1945	chr1	178388721	178388722	rs2902237	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1q25.2		rs2902237-C	0.581327	5E-8		0.0205945	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1946	chr1	178471221	178471222	rs12760731	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.2	RASAL2	rs12760731-A	0.062	5E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1946	chr1	178491878	178491879	rs12023718	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.2	C1orf49	rs12023718-G	0.072	6E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1946	chr1	178508929	178508930	rs6700266	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q25.2	TEX35	rs6700266-G	0.657534	2E-9		0.0125681	[0.0085-0.0167] unit increase	Affymetrix [NR] (imputed)	N
1946	chr1	178509461	178509462	rs11588907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q25.2		rs11588907-T	NR	3E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1946	chr1	178509461	178509462	rs11588907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q25.2		rs11588907-T	NR	1E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1946	chr1	178513410	178513411	rs10913568	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q25.2	C1orf220	rs10913568-?		9E-10		0.0245	[0.017-0.032] unit decrease	Illumina [31500000] (imputed)	N
1946	chr1	178513410	178513411	rs10913568	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	1q25.2	C1orf220	rs10913568-?	NR	2E-9		0.02492	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1946	chr1	178513894	178513895	rs10798615	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q25.2	TEX35	rs10798615-T	0.46668	6E-15		0.0153327	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q25.2		rs4650994-A	NR	4E-20		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q25.2	TEX35	rs4650994-G	0.46816	2E-21		0.0180675	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.2	NR	rs4650994-G	NR	8E-9		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.2	NR	rs4650994-G	0.483	4E-8	(EA)	0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1q25.2	ANGPTL1	rs4650994-A	0.483	2E-9	(Trans-ethnic initial)	0.021	[0.014-0.028] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1946	chr1	178515311	178515312	rs4650994	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q25.2	ANGPTL1	rs4650994-G	0.49	7E-9		0.021	[NR] unit increase	NR [NR] (imputed)	N
1947	chr1	178520679	178520680	rs17276527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q25.2	C1ORF220, TEX35, C1orf220	rs17276527-A	0.533582	2E-11		0.014855421	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1947	chr1	178522641	178522642	rs35810840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q25.2		rs35810840-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1947	chr1	178523125	178523126	rs10913570	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL1	5,366 Icelandic ancestry individuals	NA	1q25.2		rs10913570-A	0.4976	1E-43		0.249348	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
1947	chr1	178523822	178523823	rs12569313	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	1q25.2		rs12569313-A	0.1751	7E-6		0.705	[0.6056-0.8209]	Affymetrix [7975321] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	2E-9		0.022289	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	7E-10		0.022926	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	3E-10		0.022855	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	1E-8		0.0213134	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	7E-9		0.0209814	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	4E-8		0.020555	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	2E-8		0.0205924	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526270	178526271	rs6681348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1q25.2		rs6681348-A	0.467759	1E-10		0.0236491	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1947	chr1	178526278	178526279	rs6681354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.2	NR	rs6681354-G	0.520353	7E-13				Affymetrix, Illumina [22063850] (imputed)	N
1947	chr1	178526278	178526279	rs6681354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q25.2	NR	rs6681354-G	0.530404	1E-15		0.015432	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q25.2		rs12753251-G	0.466599	8E-9		0.0222417	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	7E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	5E-15				Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	7E-9	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	2E-9		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	5E-7	(EA)	0.007853	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q25.2	C1orf220, MIR4424	rs12753251-A	NR	1E-7		0.004418	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.2	NR	rs12753251-G	NR	4E-9		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1947	chr1	178529897	178529898	rs12753251	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.2	NR	rs12753251-G	0.501	2E-8	(EA)	0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1947	chr1	178531553	178531554	rs6693993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q25.2		rs6693993-C	NR	3E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1947	chr1	178531553	178531554	rs6693993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q25.2		rs6693993-C	NR	4E-23		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1947	chr1	178532187	178532188	rs4650999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs4650999-G	0.466592	1E-8		0.0219359	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1947	chr1	178533831	178533832	rs4077194	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q25.2	intergenic	rs4077194-T	0.4801	9E-12		0.0186	[0.013-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1947	chr1	178538192	178538193	rs10798620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1q25.2		rs10798620-G	0.471937	7E-12		0.0237928	[0.017-0.031] unit increase	Illumina [13476165] (imputed)	N
1947	chr1	178545925	178545926	rs16853043	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	ANGPTL1	rs16853043-G	0.352	5E-68	(Angiopoietin-related protein 1, ANGPTL1.11142.11.3)	0.43	[0.39-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1947	chr1	178568141	178568142	rs187271145	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	1q25.2	NR	rs187271145-A	NR	6E-6		1.6407		Affymetrix [8183964] (imputed)	N
1947	chr1	178572692	178572693	rs2811289	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q25.2	C1orf220, MIR4424	rs2811289-?		4E-8		0.0232	[0.015-0.031] unit decrease	Illumina [31500000] (imputed)	N
1947	chr1	178572977	178572978	rs2811290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q25.2		rs2811290-C	0.53207	3E-10		0.0239305	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1947	chr1	178572977	178572978	rs2811290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q25.2		rs2811290-T	NR	2E-45		0.0266	[0.023-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1947	chr1	178572977	178572978	rs2811290	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q25.2	C1orf220	rs2811290-C	0.531696	3E-41		0.00672435	[0.0057-0.0077] unit increase	Affymetrix [13995440] (imputed)	N
1947	chr1	178592918	178592919	rs2476559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q25.2		rs2476559-A	0.588954	2E-9		0.0245602	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1947	chr1	178594918	178594919	rs2476560	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1q25.2		rs2476560-A	0.385936	3E-8		0.0208053	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1947	chr1	178601491	178601492	rs2209169	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q25.2		rs2209169-C	0.584988	2E-8		0.0225213	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1947	chr1	178630827	178630827	rs58388121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs58388121-T	0.628808	2E-9		0.0229599	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1947	chr1	178630827	178630827	rs58388121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1q25.2		rs58388121-T	0.628808	4E-10		0.0238396	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1947	chr1	178649878	178649879	rs34534844	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	NR	rs34534844-C	0.47	1E-31	(Angiopoietin-related protein 1, ANGPTL1.11142.11.3)	0.28	[0.24-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1948	chr1	178718535	178718536	rs6425501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q25.2		rs6425501-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1948	chr1	178719305	178719306	rs4651005	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q25.2	RALGPS2	rs4651005-T	0.3214	2E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1948	chr1	178719305	178719306	rs4651005	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q25.2	RALGPS2	rs4651005-T	0.3214	1E-13		0.0185	[0.014-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1948	chr1	178740426	178740427	rs6693283	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q25.2		rs6693283-A	0.42	4E-18		8.68	z score increase	Affymetrix [9061022] (imputed)	N
1948	chr1	178740426	178740427	rs6693283	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q25.2	NR	rs6693283-A	0.4212	4E-16				NR [9056863] (imputed)	N
1948	chr1	178740426	178740427	rs6693283	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q25.2	NR	rs6693283-A	0.4212	1E-17				NR [9056863] (imputed)	N
1948	chr1	178740426	178740427	rs6693283	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q25.2	RALGPS2, ANGPTL1	rs6693283-?		8E-9				NR [7428630] (imputed)	N
1948	chr1	178763468	178763469	rs12064534	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL1	5,366 Icelandic ancestry individuals	NA	1q25.2		rs12064534-T	0.1025	2E-20		0.276216	[0.22-0.33] unit decrease	Illumina [7506463] (imputed)	N
1948	chr1	178770672	178770673	rs60070265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.2	NR	rs60070265-T	0.0122	3E-11	(MCCC2)	0.1432	NR unit increase	Illumina [1671387] (imputed)	N
1948	chr1	178780649	178780650	rs12131426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q25.2		rs12131426-A	0.42	1E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
1949	chr1	178800480	178800481	rs12064728	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q25.2		rs12064728-C	0.42	4E-30		11.41	z score increase	Affymetrix [9061022] (imputed)	N
1949	chr1	178840658	178840658	rs28372846	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	1q25.2		rs28372846-?	NR	4E-16				NR [9705931] (imputed)	N
1949	chr1	178849488	178849489	rs2184464	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q25.2	ANGPTL1	rs2184464-G	0.89328125	3E-14	(ANGPTL1, 11142_11_3)	0.2929112	[0.22-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1949	chr1	178862380	178862380	rs11445608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q25.2		rs11445608-AT	NR	2E-8		0.0198	[0.013-0.027] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1949	chr1	178899998	178899999	rs73039898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs73039898-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1949	chr1	178912404	178912405	rs67269402	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	1q25.2	RALGPS2, FAM20B	rs67269402-A	0.35	1E-6		1.331	[NR]	Illumina [421909] (imputed)	N
1950	chr1	178976338	178976339	rs113435565	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Anterior cruciate ligament rupture	495 European ancestry cases, 54 Latin-American cases, 49 East Asian ancestry cases, 82,769 European ancestry controls, 8,506 Latin-American controls, 7,469 East Asian ancestry controls		1q25.2	NR	rs113435565-C	NR	4E-7		1.91	[1.66-2.16]	Affymetrix [8303052] (imputed)	N
1950	chr1	179021745	179021746	rs6425517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs6425517-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1951	chr1	179071755	179071756	rs1325195	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	1q25.2	ABL2	rs1325195-A	0.59	5E-6		1.17	[1.10-1.26]	Affymetrix, Illumina [2217510] (imputed)	N
1952	chr1	179212165	179212166	rs1763022	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q25.2	COX5BP8	rs1763022-A	0.4998	1E-6		0.0324	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1952	chr1	179248951	179248952	rs2816177	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q25.2	NR	rs2816177-G	0.3994	7E-9		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1952	chr1	179254596	179254597	rs404818	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q25.2	NR	rs404818-T	0.2531	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
1952	chr1	179272115	179272116	rs2493121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q25.2		rs2493121-A	NR	1E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1952	chr1	179276742	179276742	rs569421885	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q25.2	NR	rs569421885-CA	0.245629	3E-37		0.0188974	[0.016-0.022] unit increase	Affymetrix [16578495] (imputed)	N
1952	chr1	179276742	179276742	rs569421885	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q25.2	NR	rs569421885-CA	0.24548599999999998	1E-62		0.054791	[0.048-0.061] unit increase	Affymetrix [16580851] (imputed)	N
1952	chr1	179293510	179293511	rs2152318	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1q25.2	NR	rs2152318-T	0.24470599999999998	2E-27		0.0317947	[0.026-0.038] unit increase	Affymetrix [16585745] (imputed)	N
1952	chr1	179298808	179298809	rs61824368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q25.2		rs61824368-T	0.317597	1E-10		0.0137676	[0.0096-0.018] unit increase	Illumina [13479295] (imputed)	N
1953	chr1	179310699	179310700	rs2248979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1q25.2	NR	rs2248979-T	0.25475099999999995	2E-12		0.0159999	[0.011-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1953	chr1	179312558	179312559	rs13306728	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q25.2		rs13306728-G	0.07	7E-12		6.85	z score increase	Affymetrix [9061022] (imputed)	N
1953	chr1	179312558	179312559	rs13306728	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q25.2	NR	rs13306728-G	0.0774	5E-9				NR [9056863] (imputed)	N
1953	chr1	179312558	179312559	rs13306728	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.2		rs13306728-A	0.92388	6E-14		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1953	chr1	179331494	179331499	rs67563284	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	1q25.2	NR	rs67563284-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1953	chr1	179338326	179338327	rs975025	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q25.2	NR	rs975025-?	NR	2E-9		1.0735834	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1953	chr1	179338326	179338327	rs975025	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.2	AXDND1	rs975025-C	0.9242	7E-14		1.0487677		Affymetrix [11880941] (imputed)	N
1953	chr1	179338326	179338327	rs975025	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q25.2	AXDND1	rs975025-C	0.9242	7E-14		1.0502204		Affymetrix [11880941] (imputed)	N
1953	chr1	179339261	179339262	rs16854009	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q25.2	AXDND1	rs16854009-?	NR	7E-12		0.020085752	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1953	chr1	179343201	179343202	rs10913737	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	1q25.2	AXDND1	rs10913737-?	NR	3E-10				NR [3144808] (imputed)	N
1953	chr1	179408711	179408729	rs138669322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q25.2		rs138669322-T	NR	7E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1953	chr1	179416377	179416378	rs7520806	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q25.2	SOAT1	rs7520806-?	NR	6E-6	(methionine)	0.1611729	[0.091-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
1953	chr1	179417779	179417780	rs11580135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1q25.2		rs11580135-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1953	chr1	179435419	179435420	rs765096654	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q25.2	AXDND1	rs765096654-T	0.1073	8E-6		0.0779	[0.044-0.112] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1954	chr1	179448852	179448853	rs6678546	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q25.2	AXDND1, AL160286.1	rs6678546-A	0.4821	1E-8		0.011541088	[0.0076-0.0155] unit increase	Affymetrix [up to 18485882] (imputed)	N
1954	chr1	179469313	179469314	rs12047808	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	1q25.2	C1orf125	rs12047808-?	0.13	6E-6			[NR]	Illumina [551642]	N
1954	chr1	179484501	179484502	rs61827668	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	1q25.2	AXDND1	rs61827668-A	0.772	5E-6		1.1351066	1.07639956-1.19701548	Affymetrix, Illumina [7701827] (imputed)	N
1954	chr1	179508037	179508038	rs188955916	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q25.2	NR	rs188955916-T	NR	2E-6	(female)	0.5758	[0.34-0.81] unit increase	Illumina [11133794] (imputed)	N
1954	chr1	179526213	179526214	rs61747728	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q25.2		rs61747728-T	0.0394	9E-13		0.24796933	[0.18-0.32] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1954	chr1	179526213	179526214	rs61747728	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	1q25.2		rs61747728-T	0.04	2E-15		0.1897	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1954	chr1	179526213	179526214	rs61747728	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Thrombomodulin levels	21,758 European ancestry individuals	9,173 individuals	1q25.2		rs61747728-T	0.04	2E-17		0.2049	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1954	chr1	179526213	179526214	rs61747728	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q25.2		rs61747728-?	NR	9E-9		0.0303061	[0.02-0.041] unit increase	NR [6912294] (imputed)	N
1954	chr1	179562706	179562707	rs12070589	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q25.2	NR	rs12070589-?	NR	2E-6				Affymetrix [NR]	N
1954	chr1	179562739	179562740	rs61310274	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	1q25.2	TDRD5	rs61310274-C	0.34	2E-6		0.2	unit decrease	Illumina [5600000] (imputed)	N
1955	chr1	179571861	179571862	rs150816167	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q25.2	TDRD5	rs150816167-T	0.9549	1E-10		0.2873	[0.2-0.37] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1955	chr1	179675577	179675578	rs11581272	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	1q25.2	TDRD5, FAM163A	rs11581272-T	0.33	3E-6		0.2	unit decrease	Illumina [5600000] (imputed)	N
1956	chr1	179749773	179749774	rs13374908	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	1q25.2	NR	rs13374908-A	0.24	2E-6		1.59	[1.39-1.79]	NR [up to 6398204] (imputed)	N
1956	chr1	179762445	179762446	rs5779036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q25.2	FAM163A	rs5779036-G	0.077904	4E-10		0.026400061	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1956	chr1	179783166	179783167	rs147052174	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1q25.2	FAM163A	rs147052174-T	0.02	1E-7		0.043	[0.027-0.059] unit increase	Illumina [~ 250000] (imputed)	N
1956	chr1	179783166	179783167	rs147052174	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q25.2	NR	rs147052174-T	0.0171	3E-13		0.0313254	[0.023-0.04] unit increase	NR [9732723] (imputed)	N
1956	chr1	179783166	179783167	rs147052174	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q25.2	NR	rs147052174-T	0.0171	2E-10		0.062309448	[0.043-0.082] unit increase	NR [~ 10000000] (imputed)	N
1956	chr1	179788332	179788333	rs12118565	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	1q25.2	Intergenic	rs12118565-?		4E-6		0.06532998	[NR] unit decrease	Illumina [575353]	N
1956	chr1	179788332	179788333	rs12118565	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	1q25.2	Intergenic	rs12118565-?		4E-6		0.006974691	[NR] unit decrease	Illumina [575353]	N
1956	chr1	179790517	179790518	rs10913893	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	1q25.2	Intergenic	rs10913893-?		4E-6		0.0652695	[NR] unit decrease	Illumina [575353]	N
1956	chr1	179790517	179790518	rs10913893	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	1q25.2	Intergenic	rs10913893-?		5E-6		0.006967264	[NR] unit decrease	Illumina [575353]	N
1957	chr1	179871711	179871712	rs505837	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q25.2	TOR1AIP2, TOR1AIP1, LHX4	rs505837-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
1957	chr1	179897069	179897070	rs507603	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q25.2	NR	rs507603-A	NR	2E-8		1.048	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1957	chr1	179924347	179924348	rs12118928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q25.2	CEP350	rs12118928-T	0.00259399999999999	9E-12		0.15754089	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1957	chr1	179942730	179942731	rs76425715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q25.2	CEP350	rs76425715-G	0.028965	1E-14		0.050383072	[0.038-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1957	chr1	179942730	179942731	rs76425715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q25.2	CEP350	rs76425715-G	0.028985	2E-10		0.0389657	[0.027-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1957	chr1	179960528	179960529	rs12135200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q25.2	CEP350	rs12135200-A	0.00252799999999997	2E-11		0.15900838	[0.11-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1957	chr1	179960553	179960554	rs61641082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q25.2	CEP350	rs61641082-T	0.02894	1E-15		0.052885212	[0.04-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1958	chr1	179989583	179989584	rs6692219	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	1q25.2	CEP350	rs6692219-C	0.028	5E-9		0.0257	[0.01-0.041] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1958	chr1	179989583	179989584	rs6692219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q25.2		rs6692219-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1958	chr1	180055984	180055985	rs7540856	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	1q25.2	NR	rs7540856-C	NR	2E-6		0.03694	[0.022-0.052] unit increase	Illumina [541493]	N
1959	chr1	180097639	180097640	rs57045420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q25.2	NR	rs57045420-A	0.028282	5E-11		0.036123	[0.025-0.047] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1959	chr1	180117913	180117914	rs12745791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	NR	rs12745791-G	0.779	6E-20	(Sulfhydryl oxidase 1, QSOX1.6217.23.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1959	chr1	180124666	180124667	rs3767199	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q25.2	QSOX1	rs3767199-T	0.3563	2E-9		0.1206	[0.081-0.16] mmHg decrease	Affymetrix [NR] (imputed)	N
1959	chr1	180124666	180124667	rs3767199	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q25.2	NR	rs3767199-G	0.62890625	9E-17	(QSOX1, 6217_23_3)	0.20416199	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1959	chr1	180124666	180124667	rs3767199	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q25.2	NR	rs3767199-G	0.62890625	6E-10	(BAG5, 12743_18_3)	0.16120751	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1959	chr1	180124871	180124872	rs3767196	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QSOX1	5,359 Icelandic ancestry individuals	NA	1q25.2		rs3767196-C	0.3729	3E-27		0.197119	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
1959	chr1	180130722	180130723	rs55946907	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	1q25.2	QSOX1, CEP350	rs55946907-C	0.901	9E-6		0.066	[0.037-0.095] unit decrease	Illumina [6150213] (imputed)	N
1959	chr1	180131639	180131640	rs10913934	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q25.2	QSOX1	rs10913934-T	0.5917	2E-13		0.1302	[0.095-0.165] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1959	chr1	180163389	180163390	rs12371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB5	5,368 Icelandic ancestry individuals	NA	1q25.2		rs12371-G	0.1023	7E-23		0.30342	[0.24-0.36] unit decrease	Illumina [7506463] (imputed)	N
1959	chr1	180163389	180163390	rs12371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C17orf78	5,362 Icelandic ancestry individuals	NA	1q25.2		rs12371-G	0.1023	5E-20		0.267904	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
1959	chr1	180163389	180163390	rs12371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAG5	5,364 Icelandic ancestry individuals	NA	1q25.2		rs12371-G	0.1023	1E-69		0.531445	[0.47-0.59] unit increase	Illumina [7506463] (imputed)	N
1959	chr1	180163389	180163390	rs12371	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	QSOX1	rs12371-G	0.089	7E-19	(Uncharacterized protein C17orf78, C17orf78.8545.14.3)	0.39	[0.31-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1959	chr1	180163389	180163390	rs12371	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.2	QSOX1	rs12371-G	0.089	1E-60	(Sulfhydryl oxidase 1, QSOX1.6217.23.3)	0.7	[0.62-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1959	chr1	180218441	180218442	rs4652492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.2		rs4652492-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1962	chr1	180496294	180496295	rs1416822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q25.3	Intergenic	rs1416822-T	0.8029	5E-9	(MTAG)	0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1962	chr1	180496294	180496295	rs1416822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q25.3	Intergenic	rs1416822-T	0.8029	3E-8		0.0136	[0.0087-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1962	chr1	180496581	180496582	rs1416823	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q25.3		rs1416823-A	0.29	3E-23		9.95	z score increase	Affymetrix [9061022] (imputed)	N
1962	chr1	180496581	180496582	rs1416823	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q25.3		rs1416823-A	0.29	9E-11		6.48	z score increase	Affymetrix [9061022] (imputed)	N
1962	chr1	180496581	180496582	rs1416823	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q25.3	NR	rs1416823-A	0.3168	1E-11				NR [9056863] (imputed)	N
1962	chr1	180521003	180521004	rs72720946	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q25.3		rs72720946-T	0.23	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
1962	chr1	180521003	180521004	rs72720946	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q25.3	NR	rs72720946-T	0.2568	2E-13				NR [9056863] (imputed)	N
1962	chr1	180529541	180529542	rs4652514	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1q25.3	NR	rs4652514-C	0.3018	1E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1962	chr1	180532901	180532902	rs68020735	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1q25.3		rs68020735-?	NR	2E-8				NR [9705931] (imputed)	N
1962	chr1	180569109	180569110	rs79673279	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs79673279-A	0.02265	5E-9	(HSPH1)	0.0504	NR unit increase	Illumina [1671387] (imputed)	N
1962	chr1	180569109	180569110	rs79673279	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs79673279-A	0.02265	2E-11	(HSPA6)	0.02404	NR unit increase	Illumina [1671387] (imputed)	N
1963	chr1	180645440	180645441	rs7527074	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	1q25.3	XPR1	rs7527074-?	NR	9E-6				Affymetrix [786195]	N
1963	chr1	180690479	180690480	rs115665962	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs115665962-T	0.01916	6E-12	(HSPA6)	0.02636	NR unit increase	Illumina [1671387] (imputed)	N
1963	chr1	180723296	180723297	rs7546227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q25.3		rs7546227-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1964	chr1	180783769	180783770	rs3002113	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	1q25.3		rs3002113-G	0.235882196	7E-6		0.013997711	[0.0079-0.0201] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1964	chr1	180820056	180820057	rs66520411	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	1q25.3		rs66520411-A	0.236172925	9E-6		0.013896804	[0.0078-0.02] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1964	chr1	180859367	180859368	rs1043069	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q25.3	XPR1	rs1043069-T	0.6183	5E-15		0.1995	[0.15-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1965	chr1	180891068	180891069	rs61811251	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	1q25.3	KIAA1614	rs61811251-A	0.011	6E-6		4.46	[2.34-8.52]	Illumina [3905175] (imputed)	N
1965	chr1	180903388	180903390	rs71121058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q25.3	KIAA1614	rs71121058-C	0.607829	2E-11		0.015677439	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1965	chr1	180903388	180903390	rs71121058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q25.3	KIAA1614	rs71121058-C	0.607844	2E-9		0.013978189	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q25.3		rs3795503-T	0.3	4E-16		8.14	z score increase	Affymetrix [9061022] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q25.3		rs3795503-T	NR	4E-18		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q25.3		rs3795503-T	NR	2E-16		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q25.3		rs3795503-T	NR	6E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q25.3		rs3795503-T	NR	2E-16		0.0111	[0.0086-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.3159	1E-17				NR [9056863] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q25.3	KIAA1614	rs3795503-C	0.68	1E-10		6.45	z-score increase	Affymetrix [4311822] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.3	KIAA1614	rs3795503-T	0.3145	2E-18		0.0176	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q25.3	KIAA1614	rs3795503-T	0.314774	3E-12		0.01649023	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q25.3	KIAA1614	rs3795503-T	0.314718	7E-14		0.017765425	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.346145	4E-14				Affymetrix, Illumina [24649327] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.314627	2E-14		0.015409	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.345718	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.314572	5E-11		0.013143	[0.0092-0.0171] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.334808	1E-19				Affymetrix, Illumina [23467995] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q25.3	NR	rs3795503-T	0.314513	2E-20		0.01889	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q25.3	NR	rs3795503-?		1E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q25.3	KIAA1614	rs3795503-T	0.3598	9E-15		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q25.3	KIAA1614	rs3795503-T	0.3274	9E-14		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q25.3	KIAA1614	rs3795503-C	0.6017	8E-13		7.169	NR z score decrease	Illumina [26237160] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q25.3		rs3795503-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1965	chr1	180905693	180905694	rs3795503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs3795503-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1965	chr1	180909060	180909061	rs1609829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q25.3		rs1609829-C	NR	6E-12		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1965	chr1	180909060	180909061	rs1609829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q25.3		rs1609829-C	NR	1E-12		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1965	chr1	180909060	180909061	rs1609829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q25.3	NR	rs1609829-C	NR	7E-13		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1965	chr1	180909060	180909061	rs1609829	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q25.3	KIAA1614	rs1609829-T	0.294471	1E-10		0.0129343	[0.009-0.0169] unit increase	NR [13737936] (imputed)	N
1965	chr1	180909060	180909061	rs1609829	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q25.3		rs1609829-?	NR	3E-9		0.0138773	[0.0094-0.0183] unit increase	Affymetrix [20259828] (imputed)	N
1965	chr1	180909548	180909549	rs1831405	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q25.3	NR	rs1831405-?		2E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1965	chr1	180909875	180909876	rs7527331	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1q25.3		rs7527331-G	0.967241	9E-6		0.0232901	[0.013-0.034] unit decrease	Illumina [13900000] (imputed)	N
1965	chr1	180943528	180943529	rs1044595	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs1044595-?	NR	9E-13	(white matter)			NR [9227495] (imputed)	N
1965	chr1	180950125	180950126	rs10753232	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			STX6	rs10753232-T	0.4055	5E-12		0.0573256	[0.041-0.074] unit decrease	Affymetrix [8165723] (imputed)	N
1965	chr1	180952293	180952294	rs57113693	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q25.3	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs57113693-?		4E-14				NR [7428630] (imputed)	N
1965	chr1	180952293	180952294	rs57113693	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	1q25.3	STX6	rs57113693-?		9E-16				Illumina [6419662] (imputed)	N
1965	chr1	180952294	180952295	rs59145927	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1q25.3	NR	rs59145927-?		4E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1965	chr1	180953852	180953853	rs3747957	32949544	Jones E	2020-09-16	Lancet Neurol	Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease (sporadic)	4,110 European ancestry cases, 13,569 European ancestry controls	1,098 European ancestry cases, 498 ,016 European ancestry controls	1q25.3	STX6	rs3747957-A	0.41	1E-10		1.15	[1?04-1?28]	Affymetrix, Illumina [6314492] (imputed)	N
1965	chr1	180961244	180961245	rs11586493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1q25.3		rs11586493-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1965	chr1	180962281	180962282	rs1411478	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	1q25.3	STX6	rs1411478-A	0.41	1E-10		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1965	chr1	180962281	180962282	rs1411478	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	1q25.3	STX6	rs1411478-?	0.58	4E-11		1.27	[1.19-1.37]	Illumina [531451]	N
1965	chr1	180972362	180972363	rs3827708	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	1q25.3		rs3827708-?	NR	4E-8				NR [9705931] (imputed)	N
1965	chr1	180986076	180986077	rs10797662	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs10797662-?	NR	3E-11	(white matter)			NR [9227495] (imputed)	N
1965	chr1	180994589	180994590	rs2331902	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q25.3		rs2331902-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1965	chr1	181006880	181006881	rs191953093	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q25.3	MR1	rs191953093-A	1.0	2E-6	(AA)	2.752	NR unit increase	Illumina [NR] (imputed)	N
1966	chr1	181011508	181011509	rs6667291	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q25.3		rs6667291-A	0.47	1E-22		9.81	z score increase	Affymetrix [9061022] (imputed)	N
1966	chr1	181011508	181011509	rs6667291	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q25.3	NR	rs6667291-A	0.4385	1E-17				NR [9056863] (imputed)	N
1966	chr1	181011508	181011509	rs6667291	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs6667291-?	NR	5E-10	(right pallidum)			NR [9227495] (imputed)	N
1966	chr1	181016528	181016529	rs6684455	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs6684455-?	NR	6E-11	(right pallidum)			NR [9227495] (imputed)	N
1966	chr1	181016773	181016774	rs12727543	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs12727543-?	NR	3E-9	(right pallidum)			NR [9227495] (imputed)	N
1966	chr1	181016773	181016774	rs12727543	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs12727543-?	NR	2E-8	(left pallidum)			NR [9227495] (imputed)	N
1966	chr1	181017246	181017247	rs10797665	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q25.3	NR	rs10797665-?	NR	3E-8	(left pallidum)			NR [9227495] (imputed)	N
1966	chr1	181031796	181031797	rs3936938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs3936938-A	0.644961	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1966	chr1	181046910	181046911	rs2332058	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	1q25.3	CROCC, MFAP2, ATP13A2, SDHB	rs2332058-?		2E-10				NR [7428630] (imputed)	N
1966	chr1	181046910	181046911	rs2332058	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q25.3	AL162431.1, STX6, MR1, IER5	rs2332058-?		4E-14				NR [7428630] (imputed)	N
1966	chr1	181052695	181052696	rs34554744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q25.3	IER5	rs34554744-G	0.619896	2E-10		0.014756372	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1966	chr1	181052695	181052696	rs34554744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q25.3	IER5	rs34554744-G	0.619942	2E-10		0.014829719	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1966	chr1	181057187	181057188	rs4652560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q25.3	NR	rs4652560-T	0.617764	5E-14		0.015397	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1966	chr1	181061915	181061916	rs61809230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q25.3		rs61809230-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1966	chr1	181074883	181074884	rs13374999	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	1q25.3		rs13374999-?	NR	6E-6				Illumina [7401356] (imputed)	N
1967	chr1	181173548	181173549	rs111309021	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Microvirga abundance in stool	5,959 Finnish ancestry individuals	NA	1q25.3		rs111309021-A	0.0147583	4E-8		0.102589	[0.066-0.139] unit increase	Illumina [7980478] (imputed)	N
1967	chr1	181199690	181199691	rs138291765	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	1q25.3	IER5	rs138291765-A	0.99	5E-6		4.9	[2.8-7] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1968	chr1	181397223	181397224	rs10910937	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	1q25.3	NR	rs10910937-C	NR	2E-7		1.71	NR	Illumina [6470615] (imputed)	N
1969	chr1	181426909	181426910	rs2332267	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q25.3	CACNA1E	rs2332267-T	0.05	8E-6	(AA)	0.42	[0.24-0.6] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1969	chr1	181490017	181490018	rs12402123	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	1q25.3	CACNA1E	rs12402123-T	0.05467	6E-7		2.81	[2.39-3.23]	Illumina [281811]	N
1969	chr1	181509717	181509718	rs6697584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.3	Intergenic	rs6697584-T	0.7906	4E-15	(MTAG)	0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1969	chr1	181509717	181509718	rs6697584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs6697584-T	0.7852	1E-13		0.0126	[0.0093-0.0159] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1969	chr1	181509717	181509718	rs6697584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.3	Intergenic	rs6697584-T	0.7852	6E-15	(MTAG)	0.0125	[0.0094-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1969	chr1	181512452	181512453	rs10910953	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q25.3	Intergenic	rs10910953-T	0.2005	1E-12	(MTAG)	0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1969	chr1	181512452	181512453	rs10910953	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs10910953-T	0.2069	1E-14	(conditional-joint)	0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1969	chr1	181517637	181517638	rs7524309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q25.3	Intergenic	rs7524309-A	0.6305	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1969	chr1	181531663	181531664	rs80231151	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1q25.3	CACNA1E	rs80231151-G	0.082	2E-6		0.305	[0.18-0.43] unit decrease	Illumina [NR] (imputed)	N
1970	chr1	181535714	181535715	rs78382112	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1q25.3	NR	rs78382112-G	0.0536779	1E-8		0.07970162	[0.052-0.107] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1970	chr1	181535714	181535715	rs78382112	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1q25.3		rs78382112-?	NR	2E-9				NR [7857346] (imputed)	N
1970	chr1	181535714	181535715	rs78382112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q25.3	Intergenic	rs78382112-A	0.0524	6E-13	(MTAG)	0.037	[0.027-0.047] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1970	chr1	181535714	181535715	rs78382112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1q25.3	Intergenic	rs78382112-A	0.0524	9E-9		0.0368	[0.024-0.049] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1970	chr1	181535714	181535715	rs78382112	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1q25.3	CACNA1E	rs78382112-A	NR	2E-10		0.044968072	[0.031-0.059] unit increase	Affymetrix [NR]	N
1970	chr1	181562268	181562269	rs16857762	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	1q25.3		rs16857762-T	0.02	1E-6		1.89	unit increase	Affymetrix [NR] (imputed)	N
1970	chr1	181571450	181571451	rs12047212	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q25.3	Intergenic	rs12047212-T	0.1195	5E-9		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1970	chr1	181585366	181585367	rs76856191	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	NR	rs76856191-?	NR	5E-8		5.449	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1970	chr1	181590857	181590858	rs199950	25378290	McQueen MB	2014-11-07	Behav Genet	The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.	Body mass index (change over time)	917 European ancestry individuals, 677 African American individuals, 209 Hispanic individuals, 73 Asian ancestry individuals, 8 Native American ancestry individuals, 2 individuals	NA	1q25.3	CACNA1E	rs199950-G	0.31	3E-6		1.0	[0.58-1.42] unit increase	Illumina [717411]	N
1970	chr1	181595396	181595397	rs76914117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs76914117-T	0.02962	1E-8	(GNMT)	0.8475	NR unit increase	Illumina [1671387] (imputed)	N
1970	chr1	181596750	181596751	rs75500877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs75500877-T	0.0485	2E-10		0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1970	chr1	181597914	181597915	rs80223426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q25.3	NR	rs80223426-G	0.0612151391549874	4E-8		0.016638713	[0.011-0.023] unit increase	NR [NR]	N
1970	chr1	181597914	181597915	rs80223426	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q25.3	NR	rs80223426-G	0.0612151391549874	4E-8		0.010627203	[0.0068-0.0144] unit increase	NR [NR]	N
1970	chr1	181625701	181625702	rs2332571	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1q25.3	NR	rs2332571-?	NR	1E-6				NR [NR] (imputed)	N
1970	chr1	181636597	181636598	rs3766979	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs3766979-A	0.3386	1E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1970	chr1	181636597	181636598	rs3766979	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.3	Intergenic	rs3766979-A	0.3386	2E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1970	chr1	181655751	181655752	rs3845441	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q25.3	NR	rs3845441-C	0.127711492920748	7E-6	(IGP31)	0.2083	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1970	chr1	181660388	181660389	rs77106231	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.3	Intergenic	rs77106231-A	0.9747	5E-9	(MTAG)	0.0308	[0.021-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	3E-9				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	2E-9				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	2E-9				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	2E-9				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	2E-8				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q25.3		rs4652676-?	NR	3E-9				NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1q25.3	NR	rs4652676-A	0.246343944386768	7E-9		0.006165954	[0.0041-0.0083] unit increase	NR [NR]	N
1971	chr1	181698692	181698693	rs4652676	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	1q25.3	CACNA1E	rs4652676-A	0.246938	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
1971	chr1	181698692	181698693	rs4652676	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1q25.3	NR	rs4652676-A	0.257	2E-6		0.018508999	[0.011-0.026] unit increase	Affymetrix [up to 6544775] (imputed)	N
1971	chr1	181734945	181734946	rs72735268	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q25.3	NR	rs72735268-T	0.054	7E-6	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
1971	chr1	181735032	181735033	rs199922	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	1q25.3	CACNA1E	rs199922-A	0.87	3E-6		0.084	[0.049-0.119] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
1971	chr1	181740200	181740201	rs199928	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q25.3	NR	rs199928-T	NR	3E-8		5.533	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1971	chr1	181740200	181740201	rs199928	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	NR	rs199928-?	NR	2E-6		4.767	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1971	chr1	181740923	181740924	rs169235	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1q25.3	NR	rs169235-G	0.247	2E-11		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
1971	chr1	181740923	181740924	rs169235	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	1q25.3	CACNA1E	rs169235-A	0.74997	5E-13		7.217	z score decrease	Illumina [18485882] (imputed)	N
1971	chr1	181745700	181745701	rs71632123	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	1q25.3	CACNA1E	rs71632123-?	NR	1E-6	(Anti-?2GPI Domain 1 IgG and Anti-cardiolipin IgG)			Affymetrix [at least 662405]	N
1971	chr1	181747348	181747349	rs199933	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q25.3	NR	rs199933-A	NR	1E-9		6.064	z score increase	Affymetrix [10847151] (imputed)	N
1971	chr1	181756341	181756342	rs6673775	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q25.3	CACNA1E	rs6673775-?	NR	1E-8		0.02704341	[0.018-0.036] unit decrease	Illumina [27896057] (imputed)	N
1971	chr1	181779677	181779678	rs57104447	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Achilles tendinopathy	4,258 European ancestry cases, 413 Latin-American cases, 268 East Asian ancestry cases, 192 African American cases, 17 South East Asian ancestry cases, 79,006 European ancestry controls, 8,147 Latin-American controls, 7,250 East Asian ancestry controls, 2,969 African American controls, 459 South East Asian ancestry controls		1q25.3	NR	rs5710444-C	NR	3E-7		1.28	[1.19-1.37]	Affymetrix [10551193] (imputed)	N
1972	chr1	181867862	181867863	rs190210789	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	1q25.3	RN7SKP229	rs190210789-A	0.9988	6E-6		1.7274	[0.98-2.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1973	chr1	181930201	181930202	rs116468452	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	1q25.3	intergenic	rs116468452-C	0.011	3E-9		5.51	[3.13-9.69]	Illumina [3905175] (imputed)	N
1973	chr1	181971187	181971188	rs75172530	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NR	rs75172530-?	NR	7E-6		0.02773	[0.016-0.04] unit increase	Affymetrix [805426] (imputed)	N
1973	chr1	182021282	182021283	rs7554182	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	1q25.3	ZNF648	rs7554182-?		6E-8	(AA)	48.5	[NR]	Illumina [936149]	N
1973	chr1	182021803	182021804	rs10911009	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.3	Intergenic	rs10911009-T	0.1723	2E-8	(MTAG)	0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1974	chr1	182081959	182081960	rs10911021	23982368	Qi L	2013-08-28	JAMA	Association between a genetic variant related to glutamic acid metabolism and coronary heart disease in individuals with type 2 diabetes.	Cardiovascular heart disease in diabetics	669 European ancestry cases, 1,641 European ancestry controls	848 European ancestry cases, 1,030 European ancestry controls	1q25.3	GLUL, ZNF648	rs10911021-C	0.679	2E-8		1.36	[1.22-1.51]	Affymetrix [2543016]	N
1974	chr1	182087283	182087284	rs11588087	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	1q25.3	NR	rs11588087-C	0.21	4E-6		3.07	[NR]	Illumina [5326313] (imputed)	N
1974	chr1	182092955	182092956	rs191268001	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	ZNF648, GLUL	rs191268001-G	0.007000000000000006	3E-16		1.1954573		Affymetrix [11880941] (imputed)	N
1974	chr1	182113744	182113745	rs190768868	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	1q25.3	NR	rs190768868-?	NR	1E-6		0.3772	[0.23-0.52] unit decrease	Illumina [at least 560000] (imputed)	N
1974	chr1	182115786	182115787	rs1281340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q25.3	NR	rs1281340-G	NR	3E-11		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1974	chr1	182115786	182115787	rs1281340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q25.3	NR	rs1281340-G	NR	1E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1974	chr1	182115786	182115787	rs1281340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q25.3	NR	rs1281340-G	NR	3E-15		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	3E-9		0.0247865	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	5E-14		0.0299395	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	2E-17		0.0329644	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679084	4E-13		0.0294193	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679078	1E-8		0.0243288	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	3E-14		0.0302166	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	2E-17		0.0329097	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679084	6E-22		0.0376622	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	1E-11		0.0265187	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	4E-17		0.0326159	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	1E-13		0.029594	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	1E-17		0.0331305	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	2E-14		0.0302924	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	2E-17		0.033265	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	4E-8		0.0228004	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	5E-13		0.0287973	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	1E-17		0.0332553	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1q25.3		rs6694102-G	0.679079	6E-17		0.0327623	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
1974	chr1	182119331	182119332	rs6694102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q25.3		rs6694102-A	NR	2E-29		0.025	[0.021-0.029] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1974	chr1	182125704	182125704	rs144926613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q25.3	GS1-122H1.2	rs144926613-TTGGAGGGCAGACTAGCCCAGGCCC	0.327959	8E-10		0.014441797	[0.0098-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1974	chr1	182136400	182136401	rs61805075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q25.3		rs61805075-G	0.670532	1E-12		0.0309269	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182136400	182136401	rs61805075	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q25.3	ZNF648	rs61805075-G	0.671304	7E-37		0.0256926	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
1974	chr1	182140184	182140185	rs17447211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q25.3		rs17447211-C	0.670386	2E-12		0.030637	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1974	chr1	182140184	182140185	rs17447211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q25.3		rs17447211-C	0.670386	3E-8		0.0237551	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182140184	182140185	rs17447211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs17447211-G	0.310047	4E-14				Affymetrix, Illumina [24649327] (imputed)	N
1974	chr1	182140184	182140185	rs17447211	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q25.3	ZNF648	rs17447211-C	0.670959	7E-11		0.0143792	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1974	chr1	182143933	182143934	rs1779799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q25.3	NR	rs1779799-G	NR	2E-9		0.0326	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q25.3		rs2489279-G	NR	3E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q25.3		rs2489279-G	NR	5E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q25.3	GS1-122H1.2	rs2489279-G	0.33308	4E-15		0.018345334	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs2489279-G	0.319394	7E-18				Affymetrix, Illumina [23472807] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q25.3	NR	rs2489279-G	0.333667	1E-18		0.017602	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs2489279-C	NR	2E-6		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1974	chr1	182144118	182144119	rs2489279	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	1q25.3	ZNF648	rs2489279-C	0.69	4E-9		0.038	[0.026-0.05] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	8E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	7E-6	(EA)	0.846	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	5E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	1E-18				Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	7E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	4E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	3E-22				Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	9E-9	(EA)	0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	4E-12		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	5E-11		0.007536	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144421	182144422	rs1689788	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q25.3	ZNF648, LINC01344	rs1689788-C	NR	3E-7	(EA)	0.008493	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1974	chr1	182144858	182144859	rs1689789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q25.3		rs1689789-A	NR	1E-15		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1974	chr1	182145544	182145545	rs1779809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q25.3	NR	rs1779809-T	0.333689	1E-13		0.014395	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1974	chr1	182150977	182150978	rs1689797	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1q25.3		rs1689797-A	0.3027	2E-6		0.0054	[0.0032-0.0076] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1974	chr1	182150977	182150978	rs1689797	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1q25.3	ZNF648	rs1689797-A	0.302	8E-22	(Trans-ethnic initial)	0.0358	[0.029-0.043] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1974	chr1	182151235	182151236	rs1689796	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q25.3	FLJ46134, LOC100130996	rs1689796-?		2E-6				Illumina [4322238] (imputed)	N
1974	chr1	182151908	182151909	rs1689791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q25.3		rs1689791-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	7E-10		0.0249795	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	8E-13		0.0280643	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	4E-9		0.0239512	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	4E-12		0.0273982	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	9E-14		0.0291046	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	2E-11		0.026676	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	2E-10		0.0255616	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	3E-11		0.026795	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	1E-13		0.0291618	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	2E-11		0.0268881	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q25.3		rs61805076-T	0.66595	3E-10		0.0251592	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q25.3	NR	rs61805076-C	NR	2E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q25.3	ZNF648	rs61805076-T	0.666571	2E-13		0.0153261	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1974	chr1	182154989	182154990	rs61805076	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q25.3	GS1-122H1.2	rs61805076-T	0.6945	1E-16		0.0251	[0.019-0.031] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1974	chr1	182161828	182161829	rs1689803	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	1q25.3	NR	rs1689803-T	0.342	2E-12				Affymetrix, Illumina [at least 2500000] (imputed)	N
1974	chr1	182163699	182163699	rs3085908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q25.3		rs3085908-T	0.661453	5E-10		0.0268725	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182168884	182168885	rs1689800	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1q25.3		rs1689800-A	0.6487	9E-6	(EA)	0.006	[0.0033-0.0087] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1974	chr1	182168884	182168885	rs1689800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs1689800-A	NR	5E-6		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1974	chr1	182168884	182168885	rs1689800	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q25.3	ZNF648	rs1689800-G	0.35	5E-20		0.034	[NR] unit decrease	NR [NR] (imputed)	N
1974	chr1	182168884	182168885	rs1689800	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1q25.3	ZNF648	rs1689800-G	0.35	3E-10		0.47	[0.31-0.63] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1974	chr1	182170791	182170792	rs1779825	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q25.3	ZNF648, LINC01344	rs1779825-?		5E-10		0.0291	[0.02-0.038] unit decrease	Illumina [31500000] (imputed)	N
1974	chr1	182171956	182171957	rs1779823	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1q25.3		rs1779823-G	0.666057	5E-13		0.0279964	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1974	chr1	182176922	182176923	rs1779820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q25.3		rs1779820-C	0.751996	5E-10		0.030244	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182176922	182176923	rs1779820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q25.3		rs1779820-C	0.752089	2E-13		0.035274	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1974	chr1	182176922	182176923	rs1779820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q25.3		rs1779820-C	0.752089	2E-9		0.0281701	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1975	chr1	182204833	182204834	rs76120745	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs76120745-A	0.980465	3E-8	(240 ms)	0.111866	[0.072-0.152] unit increase	Affymetrix [10000000] (imputed)	N
1975	chr1	182223754	182223755	rs2254327	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q25.3	TEDDM1	rs2254327-?	NR	8E-6	(tauro deoxycholate)	0.17290533	[0.097-0.249] unit increase	Affymetrix [at least 2500000] (imputed)	N
1975	chr1	182294271	182294272	rs141498473	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	ZNF648, GLUL	rs141498473-G	0.008600000000000052	2E-25		1.2434717		Affymetrix [11880941] (imputed)	N
1975	chr1	182299663	182299664	rs35305150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q25.3		rs35305150-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1975	chr1	182302529	182302530	rs9650988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q25.3	NR	rs9650988-A	0.90113	2E-10		0.01988	[0.014-0.026] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1975	chr1	182305648	182305649	rs539974331	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1q25.3	EIF1P3	rs539974331-?	NR	1E-6		4.82		Illumina [6778521] (imputed)	N
1975	chr1	182305648	182305649	rs539974331	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1q25.3		rs539974331-?	NR	9E-6		3.57	[1.95-6.55]	Illumina [6778521] (imputed)	N
1975	chr1	182312846	182312847	rs10911062	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1q25.3		rs10911062-A	0.18143	6E-6		0.039699	[0.022-0.057] unit increase	Affymetrix [15580782] (imputed)	N
1976	chr1	182328197	182328198	rs141440048	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q25.3	GLUL	rs141440048-C	0.982335	7E-9		0.0438819	[0.029-0.059] unit decrease	Affymetrix [NR] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	9E-13	(130 ms)	0.173885	[0.13-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	9E-10	(170 ms)	0.149762	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	8E-11	(158 ms)	0.157827	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	8E-10	(96 ms)	0.153495	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	8E-10	(90 ms)	0.150947	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	7E-10	(164 ms)	0.150683	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	7E-10	(102 ms)	0.150008	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	6E-13	(148 ms)	0.172412	[0.12-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	6E-12	(132 ms)	0.164224	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	6E-11	(140 ms)	0.159138	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	6E-10	(172 ms)	0.150135	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	5E-9	(84 ms)	0.147083	[0.099-0.195] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	5E-12	(146 ms)	0.168078	[0.12-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	5E-11	(114 ms)	0.163042	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-9	(98 ms)	0.146137	[0.098-0.194] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-9	(86 ms)	0.147391	[0.099-0.196] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-9	(108 ms)	0.147077	[0.099-0.195] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-9	(106 ms)	0.147798	[0.1-0.196] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-8	(64 ms)	0.13638	[0.088-0.185] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-8	(112 ms)	0.136342	[0.088-0.185] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-13	(116 ms)	0.179776	[0.13-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	4E-11	(118 ms)	0.164159	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-9	(100 ms)	0.147562	[0.099-0.196] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-8	(74 ms)	0.137755	[0.089-0.186] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-8	(110 ms)	0.137481	[0.089-0.186] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-14	(138 ms)	0.183365	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-11	(160 ms)	0.162831	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-11	(152 ms)	0.162296	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-10	(94 ms)	0.15581	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	3E-10	(124 ms)	0.152111	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-9	(126 ms)	0.146636	[0.099-0.195] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-9	(122 ms)	0.143815	[0.096-0.192] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-9	(104 ms)	0.149837	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-8	(80 ms)	0.136933	[0.088-0.185] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-13	(136 ms)	0.175858	[0.13-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	2E-10	(128 ms)	0.155971	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-9	(88 ms)	0.150053	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-9	(142 ms)	0.14885	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-8	(120 ms)	0.141679	[0.094-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-12	(150 ms)	0.171876	[0.12-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-10	(156 ms)	0.157131	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-10	(154 ms)	0.156297	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-10	(144 ms)	0.158483	[0.11-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182331103	182331103	rs575784488	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q25.3	GLUL	rs575784488-A	0.986094	1E-10	(134 ms)	0.155535	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
1976	chr1	182355319	182355320	rs6699943	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	1q25.3	GLUL	rs6699943-?	NR	7E-7	(boys)	1.89	[NR] unit increase	Illumina [774433] (imputed)	N
1976	chr1	182404683	182404684	rs557514	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	1q25.3	LINC00272, RGSL1	rs557514-A	NR	3E-6		0.01221	[NR] unit decrease	Illumina [1124301]	N
1976	chr1	182423580	182423581	rs74340015	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	RGSL1	rs74340015-T	0.009	7E-30		1.2624		Affymetrix [11880941] (imputed)	N
1977	chr1	182512199	182512200	rs55897462	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	1q25.3	RGSL1	rs55897462-G	NR	1E-8		36.87	[10.69-127.2]	Illumina [484621]	N
1977	chr1	182549018	182549019	rs533259	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		1q25.3	RNASEL	rs533259-?		6E-9	(Cluxel size)			Illumina [208975]	N
1977	chr1	182549728	182549729	rs12736689	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	1q25.3	NR	rs12736689-C	0.02967	2E-24		0.0518	[0.042-0.062] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1977	chr1	182549728	182549729	rs12736689	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1q25.3	RGS16, RNASEL	rs12736689-C	0.03	7E-18		1.3513513		Illumina [7427422] (imputed)	N
1977	chr1	182553692	182553693	rs516134	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	1q25.3	RGS16	rs516134-C	0.03	3E-12		1.21	[1.15-1.27]	NR [16760980] (imputed)	N
1977	chr1	182553692	182553693	rs516134	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	1q25.3	RGS16	rs516134-C	0.03	7E-28		0.081	[0.059-0.103] unit increase	NR [16760980] (imputed)	N
1977	chr1	182559352	182559353	rs7534480	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.3		rs7534480-T	0.385	3E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1977	chr1	182568203	182568204	rs694383	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	1q25.3	NR	rs694383-C	0.03	2E-14		0.099	[0.074-0.124] unit increase	Affymetrix [at least 12428592] (imputed)	N
1977	chr1	182568203	182568204	rs694383	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	1q25.3	RGS16	rs694383-?	0.03	3E-11				Affymetrix [up to 73355677] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Mid-point of the five least active hours of the day	88,411 European ancestry individuals	NA	1q25.3		rs1144566-T	0.03	5E-10		0.086	unit decrease	Affymetrix [8951705] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	RGS16	rs1144566-T	0.029	2E-95		1.2442		Affymetrix [11880941] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q25.3	RGS16	rs1144566-T	0.029	2E-95		1.2593554		Affymetrix [11880941] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	1q25.3		rs1144566-?	NR	8E-40				NR [~ 8900000] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Ease of getting up in the morning	112,866 European ancestry individuals	NA	1q25.3	NR	rs1144566-C	0.03	3E-8		0.066	[0.042-0.09] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	1q25.3	RGS16	rs1144566-C	0.97	1E-8		1.35	[1.22-1.50]	Affymetrix [73355677] (imputed)	N
1977	chr1	182569625	182569626	rs1144566	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	1q25.3	RGS16	rs1144566-C	0.97	3E-14		0.099	[0.074-0.124] unit increase	Affymetrix [~ 73355677] (imputed)	N
1977	chr1	182573226	182573227	rs509476	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.3		rs509476-T	0.02995	7E-56		0.099	[0.087-0.111] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1977	chr1	182579927	182579928	rs609990	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q25.3	NR	rs609990-?	NR	4E-8				Illumina [7760689] (imputed)	N
1978	chr1	182584045	182584046	rs73061369	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NR	rs73061369-?	NR	3E-6		0.10845	[0.063-0.154] unit increase	Affymetrix [805426] (imputed)	N
1978	chr1	182611108	182611109	rs1210	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	Cigarettes smoked per day in Schizophrenia	3,370 European ancestry individuals	1,802 East Asian individuals	1q25.3	RGS8	rs1210-?	NR	5E-8				NR [9500000] (imputed)	N
1978	chr1	182629599	182629600	rs74128237	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs74128237-T	0.01742	4E-9	(TXNL1)	0.04942	NR unit increase	Illumina [1671387] (imputed)	N
1978	chr1	182690086	182690087	rs375911901	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 132)	19,670 European ancestry individuals	NA	1q25.3		rs375911901-?	NR	6E-9				NR [9705931] (imputed)	N
1978	chr1	182706091	182706092	rs558671668	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	1q25.3	RP11-317P15.6	rs558671668-C	0.0062	3E-8		0.026586147	[0.017-0.036] m increase	Illumina [24111857] (imputed)	N
1978	chr1	182709621	182709622	rs7547923	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	1q25.3	NPL	rs7547923-A	0.03	7E-6		3.22	[1.94-5.39] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1979	chr1	182721898	182721899	rs78743131	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	RGS8, NPL	rs78743131-T	0.0084	1E-28		1.2526		Affymetrix [11880941] (imputed)	N
1979	chr1	182721898	182721899	rs78743131	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	1q25.3	NR	rs78743131-?	NR	5E-6				Illumina [7427422] (imputed)	N
1979	chr1	182775636	182775637	rs16859679	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q25.3	NPL	rs16859679-C	0.987206	2E-18	(N-acetylneuraminate)	0.82	[0.64-1] unit decrease	Illumina [13039987] (imputed)	N
1980	chr1	182880015	182880016	rs186768855	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	SHCBP1L	rs186768855-G	0.008600000000000052	2E-24		1.225941		Affymetrix [11880941] (imputed)	N
1980	chr1	182934754	182934755	rs34685369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q25.3	NR	rs34685369-G	NR	4E-9		0.0213	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1980	chr1	182946745	182946746	rs4480309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q25.3		rs4480309-C	NR	5E-10		0.0102	[0.0071-0.0133] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1980	chr1	182965666	182965667	rs10911184	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	1q25.3	NR	rs10911184-?	NR	5E-6	(additive)	1.2345679	[1.11-1.35]	Affymetrix [NR]	N
1980	chr1	182970523	182970524	rs4651134	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q25.3	NR	rs4651134-T	0.4534	2E-12				NR [9056863] (imputed)	N
1980	chr1	182970546	182970547	rs4651135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs4651135-A	NR	1E-8		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1980	chr1	182970546	182970547	rs4651135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs4651135-A	0.506	6E-8	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1980	chr1	182970546	182970547	rs4651135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs4651135-A	NR	6E-8		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1980	chr1	182970546	182970547	rs4651135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q25.3	NR	rs4651135-A	0.506	3E-7	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1980	chr1	182973490	182973491	rs10752881	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	1q25.3	NR	rs10752881-A	0.39	5E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [2400000] (imputed)	N
1980	chr1	182974327	182974328	rs9787073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs9787073-C	0.429277	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
1980	chr1	182974327	182974328	rs9787073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q25.3	NR	rs9787073-C	0.421758	6E-12		0.013557	[0.0097-0.0174] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1980	chr1	182974327	182974328	rs9787073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q25.3	NR	rs9787073-C	0.421749	2E-10		0.01271	[0.0088-0.0166] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1980	chr1	182975328	182975329	rs113153546	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q25.3		rs113153546-G	0.47	4E-22		9.67	z score increase	Affymetrix [9061022] (imputed)	N
1981	chr1	182980194	182980195	rs4403588	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q25.3		rs4403588-A	0.47	1E-17		8.55	z score increase	Affymetrix [9061022] (imputed)	N
1981	chr1	182986764	182986765	rs6424881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q25.3		rs6424881-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1981	chr1	182988051	182988052	rs11588675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q25.3		rs11588675-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1981	chr1	182997286	182997288	rs34099733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q25.3	LAMC1	rs34099733-C	0.43667	1E-11		0.0150647275	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1981	chr1	182997286	182997288	rs34099733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q25.3	LAMC1	rs34099733-C	0.436663	2E-10		0.0142708495	[0.0099-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1981	chr1	182998485	182998486	rs10797816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs10797816-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1981	chr1	183002638	183002639	rs6678517	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	1q25.3	LAMC1	rs6678517-A	0.5898	2E-16		1.08	[1.06-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1981	chr1	183004333	183004334	rs4129858	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q25.3	NR	rs4129858-G	0.4167	4E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1981	chr1	183004333	183004334	rs4129858	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.3	LAMC1	rs4129858-G	0.431	7E-34	(Laminin, LAMA1.LAMB1.LAMC1.2728.62.2)	0.29	[0.25-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1981	chr1	183009276	183009277	rs10911205	27599772	Ram R	2016-09-07	Clin Genet	A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia.	Hypertriglyceridemia	927 Saudi Arabian ancestry cases, 3,159 Saudi Arabian ancestry controls	317 Saudi Arabian ancestry cases, 1,098 Saudi Arabian ancestry controls		LAMC1	rs10911205-A	NR	1E-6		1.19	[0.98-1.45]	Affymetrix [~ 8000000] (imputed)	N
1981	chr1	183024468	183024469	rs10911212	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q25.3	LAMC1	rs10911212-?	NR	1E-9		0.01792792	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
1981	chr1	183025554	183025555	rs4546885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	1q25.3		rs4546885-C	NR	3E-9		0.0728	[0.049-0.097] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1981	chr1	183025554	183025555	rs4546885	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	1q25.3	NR	rs4546885-G	NR	1E-14		1.09	[1.07-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
1981	chr1	183032447	183032447	rs34295433	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q25.3	NR	rs34295433-CTAAG	NR	1E-8		1.041	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1981	chr1	183046736	183046737	rs10911221	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q25.3		rs10911221-G	0.48	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1981	chr1	183049388	183049389	rs1889307	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q25.3	NR	rs1889307-T	0.4559	1E-11				NR [9056863] (imputed)	N
1981	chr1	183058451	183058452	rs41475048	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q25.3	LAMC1	rs41475048-A	0.7451	1E-9		0.1233	[0.084-0.163] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1981	chr1	183073452	183073453	rs2027077	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	1q25.3		rs2027077-G	NR	2E-7		1.181	NR	Affymetrix [7846216] (imputed)	N
1981	chr1	183077895	183077896	rs10752898	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q25.3	LAMC1	rs10752898-T	0.442381	2E-10		0.0125655	[0.0087-0.0164] unit decrease	Affymetrix [NR] (imputed)	N
1981	chr1	183081193	183081194	rs10911251	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	1q25.3	NR	rs10911251-A	0.547	5E-8	(EA)	1.07	[1.04-1.10]	Affymetrix, Illumina [12931465] (imputed)	N
1981	chr1	183081193	183081194	rs10911251	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	1q25.3	LAMC1	rs10911251-A	0.57	9E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [2708280] (imputed)	N
1981	chr1	183092499	183092500	rs3768617	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	1q25.3	LAMC1	rs3768617-?	NR	7E-16		1.4084507	[1.3-1.54]	Illumina [8680745] (imputed)	N
1981	chr1	183100562	183100563	rs4997370	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q25.3	LAMC1	rs4997370-G	0.413276	2E-8		0.0110182	[0.0072-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1981	chr1	183101443	183101444	rs12071514	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.3	LAMC1	rs12071514-A	0.4106	1E-24		0.0198	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1982	chr1	183114864	183114864	rs35221132	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q25.3	LAMC2	rs35221132-?	NR	8E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
1982	chr1	183116530	183116531	rs12565776	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	1q25.3	LAMC1	rs12565776-?	NR	5E-6				Illumina [NR]	N
1982	chr1	183122717	183122718	rs10911268	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	1q25.3	LAMC2	rs10911268-C	0.6	4E-12		1.17	[1.12-1.22]	Illumina [up to 7441713] (imputed)	N
1982	chr1	183144722	183144723	rs10797857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q25.3		rs10797857-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1982	chr1	183146400	183146401	rs10911271	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q25.3	STIL, CMPK1, FOXE3, FOXD2	rs10911271-?		2E-10				NR [7428630] (imputed)	N
1982	chr1	183151982	183151983	rs10797858	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1q25.3	MACF1, KIAA0754, BMP8A, PABPC4	rs10797858-?		7E-9				NR [7428630] (imputed)	N
1982	chr1	183151982	183151983	rs10797858	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1q25.3	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs10797858-?		3E-8				NR [7428630] (imputed)	N
1982	chr1	183153093	183153094	rs3754525	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAMC2	5,360 Icelandic ancestry individuals	NA	1q25.3		rs3754525-C	0.1094	8E-45		0.406804	[0.35-0.46] unit decrease	Illumina [7506463] (imputed)	N
1982	chr1	183155304	183155305	rs2276543	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAMC2	5,360 Icelandic ancestry individuals	NA	1q25.3		rs2276543-A	0.2435	2E-235		0.641435	[0.6-0.68] unit increase	Illumina [7506463] (imputed)	N
1982	chr1	183155304	183155305	rs2276543	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q25.3	LAMC2	rs2276543-G	0.73671875	2E-81	(LAMC2, 9580_5_3)	0.51949614	[0.47-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
1982	chr1	183155304	183155305	rs2276543	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.3	LAMC2	rs2276543-A	0.279	4E-133	(Laminin subunit gamma-2, LAMC2.9580.5.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1982	chr1	183155481	183155482	rs684527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q25.3		rs684527-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1982	chr1	183155481	183155482	rs684527	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q25.3		rs684527-?	NR	2E-11		0.0147533	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
1982	chr1	183163126	183163127	rs513398	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q25.3	NR	rs513398-A	0.56	4E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
1982	chr1	183164472	183164473	rs3768610	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q25.3	NR	rs3768610-A	0.122	5E-38	(Laminin subunit gamma-2, LAMC2.9580.5.3)	0.47	[0.39-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1982	chr1	183170947	183170948	rs1028771	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	1q25.3	LAMC2	rs1028771-A	0.97	4E-6		0.2188	[0.13-0.31] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1982	chr1	183176429	183176430	rs525410	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1q25.3	LAMC2	rs525410-?	0.49	6E-7	(anti-dsDNA +)	1.33	[1.19-1.47]	Illumina [421318] (imputed)	N
1982	chr1	183177883	183177884	rs183708046	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	LAMC2	rs183708046-A	0.0079	1E-19		1.2066		Affymetrix [11880941] (imputed)	N
1982	chr1	183180259	183180260	rs16860537	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	1q25.3	NMNAT2	rs16860537-?	NR	5E-6	(ACA)	1.496	[NR]	Illumina [NR]	N
1982	chr1	183184649	183184650	rs12065473	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q25.3	NR	rs12065473-C	0.01045	3E-9	(SFPQ)	0.05696	NR unit increase	Illumina [1671387] (imputed)	N
1982	chr1	183192303	183192304	rs1047980	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	1q25.3	NR	rs1047980-G	NR	9E-6	(AA)	0.101615	[0.057-0.146] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1983	chr1	183255907	183255908	rs41314643	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1q25.3	LAMC1, LAMC2, NMNAT2	rs41314643-C	0.0159	1E-6		5.2714815	[4.6-5.95]	Illumina [8809853] (imputed)	N
1983	chr1	183266181	183266182	rs4652795	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	NMNAT2	rs4652795-G	0.471	5E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1983	chr1	183272485	183272486	rs12748895	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NMNAT2	rs12748895-?	NR	2E-9		0.010456	[0.007-0.0139] unit decrease	Affymetrix [805426] (imputed)	N
1983	chr1	183282574	183282575	rs10911301	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	1q25.3		rs10911301-?	NR	2E-9				NR [7857346] (imputed)	N
1983	chr1	183282574	183282575	rs10911301	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	1q25.3		rs10911301-?	NR	8E-9				NR [7857346] (imputed)	N
1983	chr1	183282574	183282575	rs10911301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NMNAT2	rs10911301-?	NR	2E-9		0.01049	[0.0071-0.0139] unit decrease	Affymetrix [805426] (imputed)	N
1983	chr1	183282574	183282575	rs10911301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	NMNAT2	rs10911301-A	NR	4E-8		5.509	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1983	chr1	183289019	183289020	rs79033343	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	1q25.3	NMNAT2	rs79033343-?	NR	3E-6		3.0		Illumina [6778521] (imputed)	N
1983	chr1	183300049	183300050	rs17484292	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q25.3	NMNAT2, SMG7, NCF	rs17484292-?	NR	1E-37		1.59	[1.40-1.79]	Illumina [at least 5000000] (imputed)	N
1983	chr1	183326767	183326768	rs115807391	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	1q25.3	NMNAT2	rs115807391-A	0.0067	2E-14		1.1807		Affymetrix [11880941] (imputed)	N
1983	chr1	183340237	183340238	rs527825	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	NMNAT2	rs527825-A	NR	2E-9		6.006	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1983	chr1	183347021	183347022	rs115561880	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q25.3	chr1mb183	rs115561880-G	0.024309301	3E-6		0.5806	[0.34-0.82] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1983	chr1	183358404	183358405	rs2078087	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	NMNAT2	rs2078087-A	0.139	1E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
1984	chr1	183383642	183383643	rs4652800	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NR	rs4652800-?	NR	6E-8		0.0094649	[0.006-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
1984	chr1	183404343	183404344	rs34617822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q25.3		rs34617822-G	NR	2E-8		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1984	chr1	183409444	183409445	rs2333659	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	1q25.3		rs2333659-?	NR	3E-9				NR [7857346] (imputed)	N
1984	chr1	183426757	183426758	rs4652802	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	SMG7-AS1	rs4652802-A	NR	2E-9		5.981	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q25.3	SMG7-AS1	rs41272536-G	0.045859	5E-11		0.035400584	[0.025-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q25.3	SMG7-AS1	rs41272536-G	0.045852	3E-11		0.035966437	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs41272536-G	0.0441441	5E-11				Affymetrix, Illumina [24649327] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q25.3	NR	rs41272536-G	0.045737	4E-13		0.034443	[0.025-0.044] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs41272536-G	0.044393	7E-11				Affymetrix, Illumina [23114412] (imputed)	N
1984	chr1	183440530	183440531	rs41272536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q25.3	NR	rs41272536-G	0.046043	2E-13		0.03588	[0.026-0.045] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1984	chr1	183459669	183459670	rs2794619	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q25.3	NR	rs2794619-?	NR	7E-8		5.396	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1984	chr1	183460525	183460526	rs182797772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs182797772-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1985	chr1	183527102	183527103	rs789182	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q25.3	NR	rs789182-?	NR	7E-7		0.0087639	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1985	chr1	183532436	183532437	rs13306575	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.3	NCF2	rs13306575-A	0.047	2E-14		1.311	[1.24-1.38]	Illumina [11270530] (imputed)	N
1985	chr1	183532436	183532437	rs13306575	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	1q25.3	NCF2	rs13306575-A	0.105	3E-8		1.62	[1.39-1.91]	Illumina [580483] (imputed)	N
1985	chr1	183532579	183532580	rs17849502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systemic lupus erythematosus	647 European ancestry cases, 482,264 European ancestry controls, 317 East Asian ancestry cases, 175,937 East Asian ancestry controls	NA	1q25.3		rs17849502-T	NR	2E-8		0.7862	[0.51-1.06] unit increase	Affymetrix, Illumina [25844568] (imputed)	N
1985	chr1	183532579	183532580	rs17849502	31591516	Ricano-Ponce I	2019-10-07	Eur J Hum Genet	Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.	Celiac disease	12,567 European ancestry cases, 381 Hispanic cases, 14,013 European ancestry controls, 813 Hispanic controls	NA	1q25.3	NCF2	rs17849502-T	0.06	2E-16		1.43		Illumina [127855]	N
1985	chr1	183532579	183532580	rs17849502	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	1q25.3	NCF2	rs17849502-T	NR	4E-15		1.36	[1.16-1.59]	Illumina [6450125] (imputed)	N
1985	chr1	183532579	183532580	rs17849502	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q25.3	NCF2	rs17849502-?	NR	6E-11	(Hispanic)	1.95	[1.59-2.38]	Illumina [at least 5000000] (imputed)	N
1985	chr1	183532579	183532580	rs17849502	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	1q25.3	NCF2	rs17849502-?	NR	1E-14		1.26		Illumina [109572]	N
1985	chr1	183540215	183540216	rs66977652	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q25.3	NR	rs66977652-T	0.623	8E-11		0.907	[0.88-0.94]	Illumina [11270530] (imputed)	N
1985	chr1	183542322	183542323	rs17849501	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q25.3	SMG7, NCF2	rs17849501-?	0.051	2E-59	(EA)	2.24	[NR]	NR [6344733] (imputed)	N
1985	chr1	183542322	183542323	rs17849501	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q25.3	SMG7, NCF2	rs17849501-T		2E-59		2.01	[NR]	Illumina [> 644674] (imputed)	N
1985	chr1	183542322	183542323	rs17849501	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1q25.3	SMG7, NCF2	rs17849501-T		3E-88		2.1	[1.95-2.26]	Illumina [644674]	N
1985	chr1	183549756	183549757	rs10911363	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1q25.3	NCF2	rs10911363-T	0.27	1E-7		1.19	[1.12-1.26]	Illumina [~ 2100000] (imputed)	N
1985	chr1	183616883	183616884	rs10911390	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	1q25.3	APOBEC4	rs10911390-T	0.06	6E-6		1.13		Illumina [2100739] (imputed)	N
1986	chr1	183659857	183659858	rs564590780	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1q25.3		rs564590780-C	0.0022988	3E-6		0.32505	[0.19-0.46] unit decrease	Affymetrix [15580782] (imputed)	N
1986	chr1	183666919	183666920	rs4507976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	RGL1	rs4507976-G	NR	3E-8		0.0155729	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1986	chr1	183679911	183679912	rs12746073	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q25.3		rs12746073-T	0.5259	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1986	chr1	183743598	183743599	rs12024301	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1q25.3	RGL1	rs12024301-G	0.07	8E-6	(AA)	5.05	[3.93-6.17]	Illumina [905956]	N
1986	chr1	183743598	183743599	rs12024301	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1q25.3	RGL1	rs12024301-G	0.05	5E-6				Illumina [905956]	N
1987	chr1	183764646	183764647	rs74821708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs74821708-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1987	chr1	183765805	183765806	rs3002655	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	1q25.3	NR	rs3002655-T	0.76	3E-6	(AA)	4.21	[2.52-5.9] bpm decrease	Illumina [at least 1100000] (imputed)	N
1987	chr1	183786776	183786777	rs114176452	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	1q25.3	RGL1	rs114176452-?	0.010999999999999899	2E-6		1.5518323	[1.22-1.97]	Affymetrix, Illumina [7701827] (imputed)	N
1987	chr1	183802258	183802259	rs2491441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q25.3		rs2491441-C	NR	2E-46		0.0325	[0.028-0.037] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1987	chr1	183802258	183802259	rs2491441	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q25.3	RGL1	rs2491441-C	0.2	1E-34		12.3	z-score increase	Affymetrix [4314223] (imputed)	N
1987	chr1	183802258	183802259	rs2491441	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q25.3	RGL1	rs2491441-?		7E-11		0.0266	[0.019-0.035] unit increase	Illumina [31500000] (imputed)	N
1987	chr1	183802258	183802259	rs2491441	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	1q25.3	RGL1	rs2491441-?	NR	2E-9		0.02446	[0.016-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1987	chr1	183802258	183802259	rs2491441	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	1q25.3	NR	rs2491441-C	NR	5E-6		5060.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1987	chr1	183803425	183803426	rs4381148	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	1q25.3		rs4381148-C	0.444434	3E-7		1.1261	NR	Affymetrix [7846216] (imputed)	N
1987	chr1	183809183	183809184	rs2491438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	1q25.3		rs2491438-C	0.30568	2E-12		0.0265247	[0.019-0.034] unit increase	Illumina [13478956] (imputed)	N
1987	chr1	183817015	183817016	rs3010054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q25.3	NR	rs3010054-A	NR	2E-14		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1987	chr1	183817015	183817016	rs3010054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q25.3	NR	rs3010054-A	NR	5E-37		0.0382	[0.032-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1987	chr1	183837031	183837032	rs4651156	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	1q25.3	RGL1	rs4651156-?	0.29	3E-6	(nortriptyline)	12.6	[NR] unit decrease	Illumina [539391]	N
1987	chr1	183839004	183839005	rs9425326	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	1q25.3	RGL1	rs9425326-C	NR	2E-6		3340.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1987	chr1	183843044	183843045	rs10911456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q25.3	RGL1	rs10911456-A	0.521083	5E-10		0.014063313	[0.0096-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr1	183843044	183843045	rs10911456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q25.3	RGL1	rs10911456-A	0.521012	5E-19		0.019997498	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr1	183843044	183843045	rs10911456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q25.3	RGL1	rs10911456-A	0.521016	1E-20		0.020826476	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr1	183843103	183843104	rs10911457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q25.3	RGL1	rs10911457-C	0.5259	6E-10		0.02225742	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1987	chr1	183843103	183843104	rs10911457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q25.3	RGL1	rs10911457-C	0.5259	1E-10		0.02324864	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1987	chr1	183847278	183847282	rs145589976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q25.3	RGL1	rs145589976-T	0.4471	1E-11		0.0245111	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1987	chr1	183847278	183847282	rs145589976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q25.3	RGL1	rs145589976-T	0.4471	2E-12		0.02547476	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1987	chr1	183852913	183852914	rs10797919	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q25.3	GLT25D2, RGL1	rs10797919-G	0.59	9E-6				Perlegen [378332]	N
1987	chr1	183870072	183870073	rs7527758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q25.3	RGL1	rs7527758-C	0.546661	1E-16		0.018551294	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr1	183870072	183870073	rs7527758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q25.3	RGL1	rs7527758-C	0.546657	3E-18		0.019544004	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1988	chr1	183901965	183901966	rs10797923	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	1q25.3		rs10797923-T	0.6919	6E-9		1.0548515	[1.03600123-1.074044757]	Affymetrix, Illumina [NR] (imputed)	N
1988	chr1	183906244	183906245	rs11583641	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	1q25.3	NR	rs11583641-C	0.72	6E-10		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1988	chr1	183910435	183910436	rs137929838	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	1q25.3	GLT25D2, RGL1, TSEN15	rs137929838-T	0.03	3E-7		1.59	[1.02-2.16] unit increase	Illumina [8437147] (imputed)	N
1988	chr1	183973027	183973028	rs6669645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs6669645-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1988	chr1	183985802	183985803	rs12039371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	COLGALT2	rs12039371-C	NR	1E-13		0.0292457	[0.022-0.037] unit increase	Affymetrix [321016] (imputed)	N
1988	chr1	183985802	183985803	rs12039371	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	1q25.3	NR	rs12039371-C	NR	2E-6		3500.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1988	chr1	183986963	183986964	rs12136316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	COLGALT2	rs12136316-T	NR	5E-9		0.0232937	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1988	chr1	183989016	183989017	rs60057466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	COLGALT2	rs60057466-G	NR	8E-13		0.024587	[0.018-0.031] unit increase	Affymetrix [321114] (imputed)	N
1988	chr1	183989105	183989106	rs57178358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	COLGALT2	rs57178358-A	NR	1E-14		0.0262354	[0.02-0.033] unit increase	Affymetrix [321016] (imputed)	N
1988	chr1	183991904	183991905	rs12128716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.3	COLGALT2	rs12128716-A	NR	2E-8		0.0208587	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
1988	chr1	184002873	184002874	rs756199	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.3	NR	rs756199-?	NR	4E-6		0.03012539	[0.017-0.043] unit increase	Illumina [34656550] (imputed)	N
1988	chr1	184002873	184002874	rs756199	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	1q25.3	GLT25D2	rs756199-G	0.42	7E-6		0.05	[0.03-0.07] cm increase	Illumina [420885]	N
1988	chr1	184005744	184005745	rs10752929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q25.3	COLGALT2	rs10752929-C	NR	5E-9		0.022143	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1988	chr1	184006548	184006549	rs114661926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q25.3	COLGALT2	rs114661926-C	0.6857	1E-8		0.0415	[0.027-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q25.3		rs3814333-T	NR	5E-14		0.013	[0.0097-0.0163] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q25.3		rs3814333-T	0.423101	2E-34		0.0247987	[0.021-0.029] unit increase	Illumina [13479295] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q25.3	COLGALT2	rs3814333-?	NR	7E-45		0.040398706	[0.035-0.046] unit increase	Illumina [27896057] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.3	NR	rs3814333-?	NR	2E-6		0.02991181	[0.018-0.042] unit increase	Illumina [34656550] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.3	NR	rs3814333-?	NR	1E-6	(male)	0.18254	[0.11-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q25.3	NR	rs3814333-?	NR	1E-10		0.15339	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q25.3	GLT25D2	rs3814333-T	0.323	5E-51		0.049	[0.043-0.055] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1988	chr1	184007118	184007119	rs3814333	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q25.3	GLT25D2	rs3814333-T	0.33	2E-13		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1988	chr1	184007491	184007495	rs371139542	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.3	COLGALT2	rs371139542-CTTTT	0.5217	2E-19		0.0177	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1988	chr1	184008270	184008271	rs4650649	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q25.3	NR	rs4650649-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1988	chr1	184009826	184009826	rs5779197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.3	TSEN15	rs5779197-GAA	0.341966	8E-17		0.01949	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1988	chr1	184009826	184009826	rs5779197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.3	TSEN15	rs5779197-GAA	0.341966	5E-23	(females)	0.03494	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1988	chr1	184009826	184009826	rs5779197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.3	TSEN15	rs5779197-GAA	0.341966	2E-13		0.0161	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1988	chr1	184009826	184009826	rs5779197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q25.3	TSEN15	rs5779197-GAA	0.341966	1E-19	(females)	0.03094	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1988	chr1	184013490	184013491	rs12047271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	COLGALT2	rs12047271-C	NR	3E-23		0.0292857	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
1988	chr1	184014592	184014593	rs1327123	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	1q25.3		rs1327123-C	0.3525	2E-16		0.910647	[0.890525457-0.931223086]	Affymetrix, Illumina [NR] (imputed)	N
1988	chr1	184014592	184014593	rs1327123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q25.3	TSEN15	rs1327123-C	NR	3E-15		0.0255165	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1988	chr1	184014592	184014593	rs1327123	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q25.3	NR	rs1327123-G	0.6447	7E-10		0.0242	[0.017-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1988	chr1	184014592	184014593	rs1327123	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1q25.3	TSEN15	rs1327123-C	0.46	7E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1988	chr1	184018474	184018475	rs1926872	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.3	NR	rs1926872-?	NR	2E-10		0.04115002	[0.028-0.054] unit increase	Illumina [34656550] (imputed)	N
1988	chr1	184018474	184018475	rs1926872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs1926872-?	NR	1E-157				NR [~ 8900000] (imputed)	N
1988	chr1	184018474	184018475	rs1926872	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs1926872-C	0.35229999999999995	7E-9	(EA, women)	0.0352	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184018474	184018475	rs1926872	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q25.3	GLT25D2	rs1926872-T	0.52	1E-18		0.043	[0.031-0.055] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1988	chr1	184019953	184019954	rs10797938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q25.3	NR	rs10797938-?	NR	5E-33				Affymetrix [~ 8270000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q25.3	NR	rs2274432-G	0.65288	3E-11		0.00541988	[0.0037-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q25.3	NR	rs2274432-G	0.65288	5E-7		0.00477167	[0.0029-0.0067] unit increase	Affymetrix [16582965] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.3	NR	rs2274432-?	NR	1E-10		0.04156415	[0.029-0.054] unit increase	Illumina [34656550] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.3		rs2274432-A	0.3568	2E-8	(EA)	0.0478	[0.031-0.064] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs2274432-?	0.3569	6E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs2274432-?	0.3569	3E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	8E-6	(men)	0.0275	[0.015-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	6E-13		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	4E-9	(women)	0.0317	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	9E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	2E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	2E-10	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	5E-7	(men)	0.0265	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	5E-10	(women)	0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q25.3	TSEN15	rs2274432-A	0.3486	3E-14		0.0283	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.3	TSEN15	rs2274432-A	0.3615	7E-9	(EA,women)	0.0267	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.3	TSEN15	rs2274432-A	0.3615	4E-6	(EA, men)	0.023	[0.013-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.3	TSEN15	rs2274432-A	0.3615	2E-12	(EA)	0.0251	[0.018-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1988	chr1	184020944	184020945	rs2274432	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	1q25.3	GLT25D2, C1orf19	rs2274432-T	0.37	8E-9		5.3	[3.54-7.06] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1988	chr1	184023528	184023529	rs1046934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	TSEN15	rs1046934-C	NR	1E-17		0.0253351	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q25.3	NR	rs1046934-?	NR	1E-10		0.04155709	[0.029-0.054] unit increase	Illumina [34656550] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.35729999999999995	4E-12	(EA)	0.0273	[0.02-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.3497	4E-12		0.0257	[0.018-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.34930000000000005	7E-7		0.0378	[0.023-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.35729999999999995	4E-7	(EA)	0.0229	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.35409999999999997	2E-6	(EA,women)	0.0271	[0.016-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q25.3	TSEN15	rs1046934-C	0.3497	2E-7		0.0225	[0.014-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs1046934-?	0.35729999999999995	2E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3	TSEN15	rs1046934-?	0.3497	9E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q25.3		rs1046934-?	0.3497	5E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.3	TSEN15	rs1046934-A	0.6381	6E-10	(EA)	0.0232	[0.016-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q25.3	TSEN15	rs1046934-A	0.6381	3E-7	(EA, women)	0.0244	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1988	chr1	184023528	184023529	rs1046934	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q25.3	TSEN15	rs1046934-A	0.64	2E-31		0.044	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1989	chr1	184035115	184035116	rs1952256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q25.3		rs1952256-G	NR	4E-113		0.0298	[0.027-0.032] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1989	chr1	184035115	184035116	rs1952256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.3	TSEN15	rs1952256-G	NR	8E-15		0.0249333	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
1989	chr1	184038142	184038143	rs6675689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	TSEN15	rs6675689-A	NR	2E-10		0.0187296	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1989	chr1	184049977	184049978	rs10911505	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q25.3	intergenic	rs10911505-T	0.673	1E-8		0.0134	[0.0089-0.0179] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1989	chr1	184051572	184051573	rs1327144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	TSEN15	rs1327144-C	NR	3E-9		0.0168005	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1989	chr1	184051572	184051573	rs1327144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q25.3	TSEN15	rs1327144-C	NR	2E-10		0.0195505	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1989	chr1	184051572	184051573	rs1327144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	TSEN15	rs1327144-C	NR	6E-10		0.0173452	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1989	chr1	184062796	184062797	rs16822427	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q25.3	NR	rs16822427-?	NR	1E-7				Affymetrix [NR]	N
1989	chr1	184081093	184081094	rs10911510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q25.3	TSEN15	rs10911510-C	NR	4E-9		0.0180611	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1989	chr1	184081715	184081715	rs398103442	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q25.3	TSEN15	rs398103442-A	0.4986	2E-6		0.0328	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1989	chr1	184140438	184140439	rs67913556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	Y_RNA	rs67913556-T	NR	2E-8		0.0171111	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1989	chr1	184140438	184140439	rs67913556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q25.3	Y_RNA	rs67913556-T	NR	9E-10		0.0185219	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1990	chr1	184188536	184188537	rs6424934	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q25.3	Y_RNA	rs6424934-A	0.3965	3E-6		0.0326	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1990	chr1	184189944	184189945	rs57882451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q25.3	NR	rs57882451-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1990	chr1	184190014	184190015	rs2378824	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q25.3	TSEN15, C1orf21	rs2378824-T	0.5685	1E-8		0.00976017	[0.0064-0.0131] unit increase	Affymetrix [11880941] (imputed)	N
1990	chr1	184272583	184272584	rs1930290	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	1q25.3	C1orf21	rs1930290-T	0.553	1E-8		0.023	[0.015-0.031] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1991	chr1	184313659	184313660	rs7542767	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	1q25.3	Intergenic	rs7542767-?	NR	3E-7		1.7307026	[NR]	Affymetrix [492217] (imputed)	N
1991	chr1	184365969	184365970	rs61823501	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q25.3	NR	rs61823501-?	NR	7E-7	(AA)	9.015058	[5.49-12.54] unit decrease	Affymetrix [at least 600000] (imputed)	N
1992	chr1	184419537	184419538	rs1535135	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q25.3	EDEM3	rs1535135-?	NR	6E-6	(kynurenine)	0.21246915	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1992	chr1	184451581	184451582	rs12136737	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	1q25.3	Intergenic	rs12136737-?	NR	1E-6		2.667378	[NR]	Affymetrix [492217] (imputed)	N
1992	chr1	184507802	184507803	rs7544240	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q25.3	C1orf21	rs7544240-?		4E-6				Illumina [4322238] (imputed)	N
1992	chr1	184536170	184536171	rs749214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q25.3		rs749214-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1992	chr1	184541601	184541602	rs1006224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs1006224-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1993	chr1	184585181	184585182	rs4651224	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q25.3	C1orf21	rs4651224-T	0.4766	1E-10		0.178	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1993	chr1	184585181	184585182	rs4651224	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q25.3	C1orf21	rs4651224-T	0.4502	7E-15		0.1944	[0.15-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1993	chr1	184647381	184647382	rs9425339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q25.3		rs9425339-C	NR	2E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1993	chr1	184649502	184649503	rs10911628	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	1q25.3	EDEM3	rs10911628-A	0.073	2E-13		1.954	[1.77-2.16]	Illumina [NR]	N
1993	chr1	184650017	184650018	rs9787132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q25.3	NR	rs9787132-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1993	chr1	184650017	184650018	rs9787132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q25.3		rs9787132-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1993	chr1	184650033	184650034	rs12137438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q25.3	Intergenic	rs12137438-A	0.6055	2E-8	(MTAG)	0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1993	chr1	184651821	184651822	rs10797987	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q25.3	NA	rs10797987-T	0.5116	8E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1993	chr1	184651821	184651822	rs10797987	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q25.3	NA	rs10797987-T	0.5116	8E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1993	chr1	184655648	184655649	rs6673341	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1q25.3	NR	rs6673341-?		2E-11		0.014513	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1993	chr1	184663580	184663581	rs9425634	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q25.3	EDEM3	rs9425634-T	0.541865	6E-9		0.00799008	[0.0053-0.0107] unit decrease	Affymetrix [12370749]	N
1993	chr1	184666493	184666494	rs11808675	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs11808675-A	0.5854	3E-11	(conditional-joint)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q25.3		rs78444298-A	NR	1E-29		0.0797	[0.066-0.093] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q25.3		rs78444298-A	NR	3E-23		0.0841	[0.067-0.101] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1q25.3		rs78444298-A	NR	2E-9		0.054	[0.036-0.072] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q25.3	EDEM3	rs78444298-A	NR	2E-8		0.0570935	[0.037-0.077] unit decrease	Affymetrix [321114] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q25.3	EDEM3	rs78444298-G	0.980484	6E-31		0.00938611	[0.0078-0.011] unit increase	Affymetrix [13995440] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q25.3	EDEM3	rs78444298-G	0.980505	2E-16		0.042032	[0.032-0.052] unit increase	Affymetrix [12370749]	N
1993	chr1	184672097	184672098	rs78444298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q25.3	NR	rs78444298-G	0.980377	2E-18		0.0246691	[0.019-0.031] unit increase	Affymetrix [16582909] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q25.3	NR	rs78444298-G	0.980635	3E-11		0.0241031	[0.016-0.032] unit increase	Affymetrix [16582621] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q25.3	NR	rs78444298-G	0.980377	1E-19		0.0288182	[0.022-0.035] unit increase	Affymetrix [16582965] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q25.3	NR	rs78444298-G	0.980635	5E-11		0.0258742	[0.017-0.035] unit increase	Affymetrix [16582614] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	1q25.3	EDEM3	rs78444298-G	0.98	1E-9	(EA)	0.045	[0.031-0.059] unit increase	NR [12082474] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1q25.3	EDEM3	rs78444298-A	NR	3E-10		0.0474	[0.033-0.062] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1q25.3	EDEM3	rs78444298-A	0.0192	3E-10		0.0473471	[0.033-0.062] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q25.3	EDEM3	rs78444298-A	0.0185	5E-24		0.0105	[0.0078-0.0132] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q25.3	EDEM3	rs78444298-A	0.0186	2E-24		0.0107	[0.008-0.0134] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1993	chr1	184672097	184672098	rs78444298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q25.3		rs78444298-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1993	chr1	184677463	184677464	rs3736757	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	EDEM3	rs3736757-A	0.473	6E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
1994	chr1	184698815	184698816	rs12126231	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q25.3	Intergenic	rs12126231-A	0.6221	3E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr1	184698815	184698816	rs12126231	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q25.3		rs12126231-A	0.6094	5E-11		0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1994	chr1	184698815	184698816	rs12126231	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q25.3	Intergenic	rs12126231-A	0.6094	5E-12	(MTAG)	0.0093	[0.0068-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr1	184706211	184706212	rs746336168	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q25.3		rs746336168-G	0.48	2E-8				NR [NR] (imputed)	N
1994	chr1	184706211	184706212	rs746336168	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q25.3		rs746336168-G	0.48	5E-11		0.01	% increase	NR [NR] (imputed)	N
1994	chr1	184706212	184706213	rs10711907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q25.3		rs10711907-G	NR	7E-10		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1994	chr1	184714133	184714134	rs144511093	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	1q25.3	NR	rs144511093-G	0.013	6E-7		0.21	[0.13-0.3] unit increase	Illumina [6374524] (imputed)	N
1994	chr1	184725396	184725397	rs861576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q25.3		rs861576-T	NR	7E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1994	chr1	184732268	184732269	rs861581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q25.3		rs861581-T	NR	2E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1994	chr1	184741320	184741321	rs114271760	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	1q25.3	FAM129A, EDEM3	rs114271760-A	0.014	1E-8	(MCP-1)	362.41	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
1994	chr1	184756371	184756372	rs115821138	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	1q25.3	FAM129A	rs115821138-A	0.0316	1E-6		0.0228	[0.014-0.032] unit increase	Affymetrix [~ 7740000] (imputed)	N
1994	chr1	184761364	184761365	rs682331	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	FAM129A	rs682331-G	0.437	4E-6	(Head circumference )	0.02	[NR] cm increase	Illumina [899892]	N
1994	chr1	184764506	184764507	rs201130852	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	1q25.3	FAM129A	rs201130852-?	NR	9E-6	(East and South Asian)			NR [at least 880000]	N
1995	chr1	184830257	184830258	rs34199165	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	1q25.3	FAM129A	rs34199165-?	NR	4E-7		6.11	[3.03-12.31]	Illumina [8600000] (imputed)	N
1995	chr1	184865131	184865132	rs115276619	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q25.3		rs115276619-A	0.01	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1995	chr1	184865131	184865132	rs115276619	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1q25.3	FAM129A	rs115276619-A	0.016	5E-9		1.432	[0.95-1.91] unit decrease	Affymetrix [NR] (imputed)	N
1995	chr1	184865131	184865132	rs115276619	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q25.3	FAM129A	rs115276619-A	0.0175	1E-11	(EA)	0.0095	[0.0068-0.0122] unit decrease	Affymetrix [NR] (imputed)	N
1995	chr1	184865131	184865132	rs115276619	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q25.3	FAM129A	rs115276619-A	0.017	4E-12		0.0094	[0.0067-0.0121] unit decrease	Affymetrix [NR] (imputed)	N
1995	chr1	184867829	184867830	rs234640	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q25.3	FAM129A	rs234640-T	0.5142	4E-12		0.0131	[0.0094-0.0168] unit decrease	Affymetrix [18391927] (imputed)	N
1995	chr1	184883505	184883506	rs185610185	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	1q25.3	NR	rs185610185-?	NR	5E-6		0.131	[0.075-0.187] unit decrease	Illumina [at least 560000] (imputed)	N
1995	chr1	184912126	184912127	rs170884	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	1q25.3	FAM129A	rs170884-C	0.67	1E-7		0.452	[0.29-0.62] unit increase	Illumina [6007542] (imputed)	N
1995	chr1	184926975	184926976	rs192011920	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q25.3	FAM129A	rs192011920-G	0.0107694338936024	3E-7	(F_Veillonellaceae_HB)	1.25198	[0.77-1.73] unit decrease	Illumina [7711310] (imputed)	N
1996	chr1	184942670	184942671	rs234108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q25.3	FAM129A	rs234108-A	0.478552	1E-10		0.01442151	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1996	chr1	184942670	184942671	rs234108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs234108-G	0.516265	1E-10				Affymetrix, Illumina [17210439] (imputed)	N
1996	chr1	184942670	184942671	rs234108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q25.3	NR	rs234108-G	0.52096	4E-13		0.013887	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1996	chr1	185014001	185014002	rs3753573	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q25.3	RNF2	rs3753573-A	0.0020	2E-6	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
1996	chr1	185026907	185026908	rs79091515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q25.3	NR	rs79091515-A	NR	3E-10		0.0474	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1996	chr1	185026907	185026908	rs79091515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q25.3	NR	rs79091515-A	NR	9E-24		0.0755	[0.061-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1996	chr1	185026907	185026908	rs79091515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q25.3	NR	rs79091515-A	NR	1E-10		0.0487	[0.034-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1996	chr1	185026907	185026908	rs79091515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q25.3	NR	rs79091515-A	NR	4E-24		0.0763	[0.062-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1996	chr1	185033816	185033819	rs72392086	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	1q25.3	RNF2	rs72392086-?	0.04	2E-7		7.6	[NR] unit increase	Affymetrix [7884700] (imputed)	N
1996	chr1	185041371	185041372	rs72739697	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q25.3	RNF2	rs72739697-T	NR	2E-6		0.0298908	[0.018-0.042] unit decrease	Illumina [13520550] (imputed)	N
1996	chr1	185067804	185067805	rs2057222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q25.3		rs2057222-C	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1996	chr1	185067804	185067805	rs2057222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q25.3		rs2057222-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1997	chr1	185077563	185077564	rs12025737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q25.3		rs12025737-T	NR	6E-14		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1997	chr1	185110366	185110367	rs6424971	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1q25.3	TRMT1L	rs6424971-T	0.4829	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1997	chr1	185126865	185126866	rs3806243	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 2,685 African ancestry individuals	NA	1q25.3	NR	rs3806243-?	NR	2E-8				Illumina [~ 250000] (imputed)	N
1997	chr1	185136457	185136458	rs6674490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q25.3		rs6674490-A	NR	1E-11		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1997	chr1	185137627	185137628	rs10797999	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1q25.3	SWT1	rs10797999-C	NR	1E-8		0.00720991	[0.0047-0.0097] unit decrease	Affymetrix [10061374] (imputed)	N
1997	chr1	185166950	185166951	rs144658860	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	1q25.3	NR	rs144658860-?	NR	8E-6		0.1197	[0.067-0.172] unit decrease	Illumina [at least 560000] (imputed)	N
1998	chr1	185210787	185210788	rs562581727	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	1q25.3		rs562581727-?	NR	9E-6		1.908	[1.435-2.536]	Affymetrix [7975321] (imputed)	N
1998	chr1	185236511	185236512	rs1889976	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	1q25.3	SWT1	rs1889976-?	NR	9E-6	(Asian)	3.88	[2.13-7.05]	NR [341191]	N
1998	chr1	185267113	185267114	rs10174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs10174-G	0.398095	2E-16				Affymetrix, Illumina [24588908] (imputed)	N
1998	chr1	185267113	185267114	rs10174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q25.3	NR	rs10174-G	0.414122	2E-19		0.017533	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1998	chr1	185299345	185299346	rs188560777	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	1q25.3	NR	rs188560777-?	NR	8E-6		0.1059	[0.059-0.152] unit decrease	Illumina [at least 560000] (imputed)	N
1998	chr1	185311721	185311722	rs997283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q25.3	NR	rs997283-A	0.431818	8E-9		0.012955103	[0.0086-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1998	chr1	185311721	185311722	rs997283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q25.3	NR	rs997283-A	0.431808	1E-9		0.0136535475	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1999	chr1	185344286	185344287	rs12025991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q25.3		rs12025991-G	0.421287	1E-15		0.018208947	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1999	chr1	185368936	185368936	rs11379633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q25.3		rs11379633-TC	0.673483	9E-15		0.018752623	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1999	chr1	185386614	185386615	rs10489482	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	1q25.3	GS1-279B7.1, LINC01350	rs10489482-T	0.2923	3E-6	(male)	0.1045	[0.061-0.148] unit increase	NR [NR] (imputed)	N
1999	chr1	185391166	185391167	rs10489481	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q25.3		rs10489481-G	0.679	3E-18				Affymetrix [10369434] (imputed)	N
1999	chr1	185391166	185391167	rs10489481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q25.3		rs10489481-A	0.320769	3E-11		0.015793448	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1999	chr1	185391166	185391167	rs10489481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q25.3	intergenic	rs10489481-A	0.3219	2E-15		0.03029188	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1999	chr1	185394833	185394834	rs10798014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q25.3		rs10798014-G	0.321137	4E-9		0.014033822	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1999	chr1	185395181	185395182	rs10911725	29971594	Rosenberger A	2018-07-03	Int Arch Occup Environ Health	Genetic modifiers of radon-induced lung cancer risk: a genome-wide interaction study in former uranium miners.	Lung cancer x radon exposure interaction (1df)	49 European ancestry high radon exposure cases, 15,028 European ancestry low radon exposure cases, 259 European ancestry high radon exposure controls, 13,263 European ancestry low radon exposure controls	NA	1q25.3	NR	rs10911725-?	NR	5E-6		4.7619047	[2.38-9.09]	Illumina [407117]	N
1999	chr1	185395845	185395846	rs7545591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q25.3		rs7545591-G	NR	2E-23		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1999	chr1	185398982	185398983	rs6687373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q25.3	RNU7-183P	rs6687373-A	0.679015	4E-21		0.022390408	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1999	chr1	185400938	185400939	rs11590380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q25.3	NR	rs11590380-C	0.657243	3E-32				Affymetrix, Illumina [23467995] (imputed)	N
1999	chr1	185400938	185400939	rs11590380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q25.3	NR	rs11590380-C	0.679418	2E-32		0.024736	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1999	chr1	185401228	185401229	rs7364556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q25.3	CTA-277P6.1, RNU7-183P	rs7364556-T	0.320849	1E-29		0.02683743	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1999	chr1	185409060	185409061	rs10732976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q25.3	CTA-277P6.1	rs10732976-A	0.6935	2E-16		0.03197058	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1999	chr1	185409060	185409061	rs10732976	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q25.3	CTA-277P6.1	rs10732976-A	0.6934	5E-10		0.02434102	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1999	chr1	185451120	185451121	rs12407722	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,393 European ancestry girls	NA	1q25.3	intergenic	rs12407722-A	0.05	6E-8		1151.37	[734.44-1568.3] unit decrease	Illumina [27449291] (imputed)	N
1999	chr1	185451120	185451121	rs12407722	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	1q25.3	intergenic	rs12407722-?	NR	4E-6		102.3	[-337.72-542.32] unit increase	Illumina [27449291] (imputed)	N
2000	chr1	185566550	185566551	rs148428208	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q25.3	AF508906	rs148428208-G	0.998	3E-6	(AA)	1.173	NR unit decrease	Illumina [NR] (imputed)	N
2001	chr1	185684622	185684623	rs74133262	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	1q25.3	NR	rs74133262-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
2002	chr1	185749873	185749874	rs192013290	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1q25.3	HMCN1	rs192013290-T	0.006	1E-6	(liability model)	0.51	[0.29-0.73] unit increase	NR [19725427] (imputed)	N
2002	chr1	185794882	185794883	rs13375391	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	1q31.1	HMCN1	rs13375391-A		9E-6		5.82	[NR] ms increase	Illumina [> 930000]	N
2004	chr1	186003089	186003090	rs61829959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q31.1		rs61829959-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2004	chr1	186044846	186044847	rs10752961	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q31.1	NR	rs10752961-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
2004	chr1	186090369	186090370	rs2146098	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q31.1	MIR548F1	rs2146098-A	0.6452	2E-13		0.018	[0.013-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
2004	chr1	186090369	186090370	rs2146098	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q31.1	MIR548F1	rs2146098-A	0.6452	4E-11		0.0164	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
2004	chr1	186092075	186092076	rs2057388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q31.1		rs2057388-?	NR	4E-16				NR [~ 8900000] (imputed)	N
2004	chr1	186113851	186113852	rs17531405	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q31.1	MIR548F1	rs17531405-C	0.1804	3E-19		0.028	[0.022-0.034] unit increase	Affymetrix [19819130] (imputed)	N
2004	chr1	186113851	186113852	rs17531405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q31.1		rs17531405-?	NR	3E-23				NR [~ 8900000] (imputed)	N
2004	chr1	186113851	186113852	rs17531405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q31.1		rs17531405-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2005	chr1	186191771	186191772	rs61831098	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1q31.1	HMCN1	rs61831098-T	0.0041	5E-6		0.5179	[0.29-0.74] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2005	chr1	186194429	186194430	rs114653045	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q31.1	HMCN1	rs114653045-T	0.0011	4E-6		1.1463	[0.66-1.63] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2005	chr1	186227270	186227271	rs182020790	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	1q31.1		rs182020790-G	NR	7E-6	(GLM)	4.7248	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2006	chr1	186258228	186258229	rs1293970	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	1q31.1	PRG4	rs1293970-?	NR	7E-7	(20x)			NR [2092490]	N
2006	chr1	186258228	186258229	rs1293970	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	1q31.1	PRG4	rs1293970-?	NR	3E-6	(10x)			NR [2092490]	N
2006	chr1	186258228	186258229	rs1293970	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	1q31.1	PRG4	rs1293970-?	NR	2E-6	(Vehicle)			NR [2092490]	N
2006	chr1	186275563	186275564	rs12128607	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SOCS3	5,366 Icelandic ancestry individuals	NA	1q31.1		rs12128607-T	0.0579	6E-14		0.30666	[0.23-0.39] unit decrease	Illumina [7506463] (imputed)	N
2006	chr1	186370280	186370281	rs180959681	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q31.1	OCLM	rs180959681-G	NR	6E-6		0.167603	[0.095-0.24] unit increase	Illumina [13519193] (imputed)	N
2006	chr1	186380441	186380442	rs7547924	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.1	NR	rs7547924-?	NR	3E-7				Affymetrix [NR]	N
2007	chr1	186417696	186417697	rs6672836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q31.1		rs6672836-C	NR	7E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2007	chr1	186502684	186502685	rs116542657	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1q31.1	NR	rs116542657-?	NR	5E-6		0.9587	[0.54-1.38] unit decrease	Illumina [at least 560000] (imputed)	N
2008	chr1	186516067	186516068	rs4325093	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q31.1	NR	rs4325093-?	NR	2E-8				Illumina [7760689] (imputed)	N
2008	chr1	186519440	186519441	rs187654071	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q31.1	Intergenic	rs187654071-T	NR	5E-6		0.171754	[0.098-0.246] unit decrease	Illumina [13519193] (imputed)	N
2008	chr1	186609233	186609234	rs200349254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q31.1		rs200349254-A	NR	2E-10		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2008	chr1	186632316	186632317	rs10911902	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	1q31.1		rs10911902-T	NR	2E-8		0.92	[0.89-0.95]	NR [13810676] (imputed)	N
2008	chr1	186632316	186632317	rs10911902	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	1q31.1	intergenic	rs10911902-?	0.17	2E-6		1.79	[NR]	Affymetrix [492900]	N
2009	chr1	186658211	186658212	rs1119066	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q31.1	PACERR	rs1119066-A	0.1536	1E-8		0.0027	[0.0017-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2009	chr1	186718260	186718261	rs56129505	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q31.1	PACERR	rs56129505-T	0.2881	3E-8		0.0208	[0.014-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
2009	chr1	186718260	186718261	rs56129505	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q31.1	PACERR	rs56129505-T	0.3279	3E-7		0.021532	[0.013-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
2009	chr1	186725002	186725003	rs4140564	18471798	Valdes AM	2008-05-08	Am J Hum Genet	Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis.	Knee osteoarthritis	357 European ancestry cases, 285 European ancestry controls	1,177 European ancestry cases, 2,372 European ancestry controls	1q31.1	PTGS2, PLA2G4A	rs4140564-?	0.05	3E-6		1.59	[1.31-1.94]	Illumina [413461]	N
2009	chr1	186729400	186729401	rs2383531	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1q31.1	PLA2G4A	rs2383531-A	0.9351	4E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2009	chr1	186732169	186732170	rs56160832	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q31.1	NR	rs56160832-A	0.1044	5E-6	(EA)	0.0463	[0.026-0.066] unit increase	Illumina [~ 11800000] (imputed)	N
2009	chr1	186762078	186762079	rs16825911	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q31.1	NR	rs16825911-C	0.02	1E-11		0.0389	[0.027-0.05] unit decrease	NR [NR]	N
2009	chr1	186764355	186764356	rs148938176	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q31.1	Intergenic	rs148938176-G	NR	8E-6		0.188615	[0.11-0.27] unit increase	Illumina [13519193] (imputed)	N
2009	chr1	186769571	186769572	rs78329830	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q31.1	PLA2G4A	rs78329830-A	0.9601	1E-11		0.0054	[0.0036-0.0072] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2010	chr1	186814568	186814569	rs78943690	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.1	NR	rs78943690-T	0.03833	2E-8	(FDX1)	0.01005	NR unit decrease	Illumina [1671387] (imputed)	N
2010	chr1	186825715	186825716	rs114333818	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	1q31.1	NR	rs114333818-A	NR	7E-6		1.3513513	[NR]	Illumina [up to 9792010] (imputed)	N
2010	chr1	186870071	186870072	rs12720541	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	1q31.1	PLA2G4A	rs12720541-T	0.264	9E-6	(GAE)	1.21	[1.10-1.35]	Affymetrix [4560000] (imputed)	N
2010	chr1	186875458	186875459	rs10798069	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.1	PTGS2, PLA2G4A	rs10798069-C	0.51	2E-7	(EA)	1.0524286		Affymetrix, Illumina [~ 9000000] (imputed)	N
2010	chr1	186875458	186875459	rs10798069	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.1	PTGS2, PLA2G4A	rs10798069-C	0.51	4E-9	(EA)	1.0729233	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2011	chr1	186913826	186913827	rs6683416	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	1q31.1	PLA2G4A	rs6683416-C	0.75	6E-6		1.369863	[1.19-1.56]	Affymetrix [7515136] (imputed)	N
2011	chr1	186954661	186954662	rs763038496	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q31.1	PLA2G4A	rs763038496-T	0.9989	4E-6		1.0122	[0.58-1.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2011	chr1	186968765	186968766	rs148010464	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1q31.1		rs148010464-?	NR	1E-6		1.1451744	[1.08406143710451-1.20973247476426]	Illumina [7827597] (imputed)	N
2013	chr1	187243168	187243169	rs75066068	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	1q31.1	NR	rs75066068-C	0.95	4E-6		1.41	[NR]	Affymetrix [87696888] (imputed)	N
2013	chr1	187269476	187269477	rs36016753	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q31.1	intergenic	rs36016753-?	NR	2E-8		0.0139536	[0.0091-0.0188] unit decrease	Affymetrix [25921788] (imputed)	N
2013	chr1	187276552	187276553	rs1390496	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		1q31.1	NR	rs1390496-G	0.743567	5E-6		1.126	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
2013	chr1	187291218	187291219	rs1496089	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1q31.1	NR	rs1496089-T	0.736326	9E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
2013	chr1	187292607	187292608	rs6683451	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia x saturated fatty acids interaction	1,087 European ancestry less-fat diet women, 10,707 European ancestry more-fat diet women	NA	1q31.1	PLA2G4A	rs6683451-?	NR	9E-6				NR [18717781] (imputed)	N
2013	chr1	187292607	187292608	rs6683451	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia in less-fat diet	1,087 European ancestry women	NA	1q31.1	PLA2G4A	rs6683451-?	NR	5E-8		3.16	[NR]	NR [18717781] (imputed)	N
2013	chr1	187297882	187297883	rs1285495	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	1q31.1	NR	rs1285495-G	0.3973	3E-6		0.144	[0.084-0.204] unit decrease	Illumina [10677593] (imputed)	N
2014	chr1	187348809	187348810	rs80084600	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	1q31.1	intergenic	rs80084600-?	NR	7E-8		1.977	[1.543-2.533]	Illumina [7412560] (imputed)	N
2014	chr1	187387677	187387678	rs78538883	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.1	NR	rs78538883-G	0.01916	2E-8	(NCL)	0.28	NR unit increase	Illumina [1671387] (imputed)	N
2014	chr1	187399517	187399518	rs146244859	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	1q31.1	NR	rs146244859-A	0.96	7E-6		1.42	[NR]	Affymetrix [87696888] (imputed)	N
2014	chr1	187412041	187412042	rs2244067	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1q31.1	intergenic	rs2244067-T	NR	7E-6		0.2142	unit increase	Illumina [5767231] (imputed)	N
2015	chr1	187501669	187501670	rs16827201	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.1	NR	rs16827201-?	NR	4E-13				Affymetrix [NR]	N
2015	chr1	187524262	187524263	rs10912094	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1q31.1	NR	rs10912094-?		9E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
2015	chr1	187524262	187524263	rs10912094	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	1q31.1	NR	rs10912094-?		9E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
2015	chr1	187558547	187558548	rs143152420	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	1q31.1	NR	rs143152420-T	NR	2E-7		2.802	unit increase	Illumina [NR]	N
2016	chr1	187635291	187635291	rs201825753	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	1q31.1	NR	rs201825753-C		9E-6		0.2391	[0.13-0.34] SD units decrease	NR [10700000] (imputed)	N
2016	chr1	187661529	187661530	rs953554	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	1q31.1	NR	rs953554-?		6E-6	(males)			Illumina [1211988] (imputed)	N
2016	chr1	187681622	187681623	rs4521954	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	1q31.1	NR	rs4521954-A	0.295	5E-6	(Total trans-18:1, EA)	0.0476	[0.027-0.068] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2016	chr1	187683955	187683956	rs4074404	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q31.1	PLA2G4A	rs4074404-T	0.840611	4E-11		0.0126757	[0.0089-0.0164] unit decrease	Affymetrix [12370749]	N
2018	chr1	187902980	187902981	rs655167	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	1q31.1	LOC100129274	rs655167-A	0.124	7E-6		1.259	[1.14-1.39]	Illumina [870065]	N
2019	chr1	187965011	187965012	rs61822096	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q31.1	Intergenic	rs61822096-T	NR	6E-6	(women)	0.0411814	[0.023-0.059] unit decrease	Illumina [13520550] (imputed)	N
2019	chr1	188000242	188000243	rs77443641	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	1q31.1	NR	rs77443641-A	NR	3E-6	(Hispanic)	10.94	[6.42-15.46] unit increase	Affymetrix [14000000] (imputed)	N
2019	chr1	188023779	188023780	rs17477137	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q31.1	NR	rs17477137-A	NR	4E-6		0.01439	[0.0083-0.0205] unit decrease	Illumina [~ 540852]	N
2019	chr1	188085832	188085833	rs10489764	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1q31.1	FAM5C	rs10489764-?		8E-6				Illumina [859311]	N
2020	chr1	188107058	188107059	rs17478570	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q31.1	NR	rs17478570-A	0.307	4E-8		0.00640562	[0.0041-0.0087] unit increase	NR [9732723] (imputed)	N
2020	chr1	188115857	188115858	rs72725224	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1q31.1	NR	rs72725224-?		4E-9		0.0464317	[0.031-0.062] unit decrease	Affymetrix [19400418] (imputed)	N
2020	chr1	188187946	188187947	rs12734405	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q31.1	NR	rs12734405-C	NR	3E-7		0.01497	[0.0092-0.0207] unit decrease	Illumina [~ 540852]	N
2022	chr1	188379427	188379428	rs12125250	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1q31.1	intergenic	rs12125250-C	NR	4E-6	(Foreign Policy)	0.124	[0.071-0.177] unit decrease	Illumina [628922]	N
2022	chr1	188383315	188383316	rs12142669	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q31.1	intergenic	rs12142669-A	0.104	3E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
2023	chr1	188515144	188515145	rs1586059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q31.1		rs1586059-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2024	chr1	188621555	188621556	rs6605005	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	1q31.1	PLA2G4A, BRINP3	rs6605005-T	0.79	8E-8		0.24	[0.15-0.33] unit increase	Affymetrix [up to 9597202] (imputed)	N
2024	chr1	188642560	188642561	rs76704560	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1q31.1		rs76704560-?	NR	2E-12		2.7687	[2-3.54] unit decrease	Affymetrix [NR] (imputed)	N
2024	chr1	188713330	188713331	rs114265851	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-145 abundance in stool	5,959 Finnish ancestry individuals	NA	1q31.1		rs114265851-A	0.0138959	4E-8		0.234989	[0.15-0.32] unit decrease	Illumina [7980478] (imputed)	N
2024	chr1	188716517	188716518	rs61836371	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Hungatella sp900155545 abundance in stool	5,959 Finnish ancestry individuals	NA	1q31.1		rs61836371-T	0.0142228	3E-8		0.148515	[0.096-0.201] unit increase	Illumina [7980478] (imputed)	N
2025	chr1	188774813	188774814	rs145002786	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.1	NR	rs145002786-T	0.02613	2E-8	(AGT)	0.04649	NR unit increase	Illumina [1671387] (imputed)	N
2025	chr1	188834543	188834544	rs12063100	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	1q31.1	NR	rs12063100-?	NR	5E-7	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
2025	chr1	188856695	188856696	rs74138196	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	1q31.1	intergenic	rs74138196-C	0.019	7E-7		0.17	NR unit increase	Illumina [6417232] (imputed)	N
2026	chr1	188906151	188906152	rs113154826	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	1q31.1	BRINP3	rs113154826-C	NR	2E-12		0.603	[0.44-0.77] unit increase	NR [11024754] (imputed)	N
2026	chr1	188906151	188906152	rs113154826	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	1q31.1	BRINP3	rs113154826-C	NR	1E-8		0.484	[0.32-0.65] unit increase	NR [11024754] (imputed)	N
2027	chr1	189021169	189021170	rs78455250	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	1q31.1	LINC01037, BRINP3	rs78455250-G	NR	4E-8		0.987	[0.64-1.34] unit decrease	Illumina [27700000] (imputed)	N
2028	chr1	189157259	189157260	rs74138220	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	1q31.1	LINC01037, BRINP3	rs74138220-G	NR	4E-7		0.858	[0.53-1.19] unit decrease	Illumina [27700000] (imputed)	N
2029	chr1	189318327	189318328	rs7539118	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q31.1		rs7539118-G	NR	6E-6	(daytime napping duration)	0.244	[0.14-0.35] unit increase	Affymetrix [7141204] (imputed)	N
2030	chr1	189413174	189413175	rs12408261	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	1q31.1	NR	rs12408261-?		3E-6		0.28	unit decrease	Illumina [1211988] (imputed)	N
2030	chr1	189515416	189515417	rs10436911	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.1	NR	rs10436911-?	NR	2E-10				Affymetrix [NR]	N
2031	chr1	189589338	189589339	rs10489759	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q31.1	LOC647132	rs10489759-?		8E-8	(EA)			Illumina [NR]	N
2031	chr1	189603031	189603032	rs4272628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q31.1		rs4272628-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2031	chr1	189603031	189603032	rs4272628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q31.1	Intergenic	rs4272628-A	0.5204	2E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2032	chr1	189723622	189723623	rs10737562	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	1q31.1	intergenic	rs10737562-?	0.50	7E-6	(anti-dsDNA +)	1.3	[1.16-1.45]	Illumina [421318] (imputed)	N
2032	chr1	189780494	189780494	rs66527028	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		1q31.1	RP11-398M15.1	rs66527028-GTTT	0.974279	8E-6		1.38276	[0.79-1.98] unit decrease	Illumina [640625] (imputed)	N
2033	chr1	189861403	189861404	rs1400544	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	1q31.1	intergenic	rs1400544-?	NR	6E-6	(CCA IMT)			Affymetrix [70897]	N
2033	chr1	189893593	189893594	rs34252091	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	1q31.1		rs34252091-?	NR	1E-6	(MLM)	0.2422166	[0.15-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
2033	chr1	189893593	189893594	rs34252091	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	1q31.1		rs34252091-?	NR	6E-6	(MLM)	0.2247672	[0.13-0.32] unit increase	Illumina [~ 9000000] (imputed)	N
2033	chr1	189921726	189921727	rs61818983	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	1q31.1	NR	rs61818983-A	0.52	2E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
2034	chr1	189966396	189966397	rs815753	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1q31.1	NR	rs815753-C	0.3022	4E-9		0.0119	[0.008-0.0158] unit decrease	Illumina [NR] (imputed)	N
2034	chr1	189992291	189992292	rs4326623	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q31.1	NA	rs4326623-C		3E-8		0.0106699	[0.0069-0.0145] unit increase	Illumina [13288253] (imputed)	N
2034	chr1	190007605	190007606	rs34580810	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q31.1	FAM5C	rs34580810-A	0.3376	6E-10		0.0110672	[0.0076-0.0146] unit decrease	Affymetrix [11880941] (imputed)	N
2035	chr1	190057679	190057680	rs2419374	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide ideation score in major depressive disorder	358 European ancestry individuals	NA	1q31.1	BRINP3, FAM5C	rs2419374-A	0.19	1E-6		3.456	Suicidal ideation score increase	Illumina [794207]	N
2035	chr1	190060094	190060095	rs11803128	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q31.1	NR	rs11803128-G	0.3459	7E-11		1.0416667	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2035	chr1	190060094	190060095	rs11803128	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1q31.1	NR	rs11803128-G	0.3419	5E-9		0.0135	[0.009-0.018] unit increase	Illumina [NR] (imputed)	N
2035	chr1	190066385	190066386	rs1935881	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1q31.1	FAM5C	rs1935881-T	0.643387	1E-6		0.0283	[0.017-0.04] unit decrease	Illumina [1220000] (imputed)	N
2035	chr1	190066385	190066386	rs1935881	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	1q31.1	FAM5C	rs1935881-?	NR	6E-6	(LAD)			Affymetrix [70897]	N
2035	chr1	190095126	190095131	rs146820337	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q31.1	FAM5C	rs146820337-I	0.5248999999999999	2E-10		1.0405612		Affymetrix [11880941] (imputed)	N
2035	chr1	190131569	190131570	rs2247300	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1q31.1	BRINP3	rs2247300-C	0.4913	5E-6		0.0312	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2035	chr1	190131749	190131750	rs10920654	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	1q31.1	NR	rs10920654-T	NR	3E-8	(Cox proportional hazards regression model)	76.85	[16.51-357.84]	Illumina [810622]	N
2036	chr1	190187789	190187790	rs12122665	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	1q31.1	NR	rs12122665-T	0.509429	6E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
2036	chr1	190200422	190200423	rs6428016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q31.1		rs6428016-T	NR	4E-17		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q31.1	NA	rs10920678-A	0.425	7E-20		0.0149	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q31.1	NA	rs10920678-A	0.425	7E-20		0.0149	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q31.1	NR	rs10920678-A	NR	7E-11		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1q31.1	NR	rs10920678-G	0.5721	2E-11		0.0125	[0.0088-0.0162] unit increase	Illumina [NR] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	1q31.1	NR	rs10920678-G	0.5721	6E-10		0.0142	[0.0097-0.0187] unit increase	Illumina [NR] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q31.1	BRINP3	rs10920678-G	0.57	3E-13		0.017	[0.013-0.021] unit decrease	Illumina [6108953] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q31.1	LOC440704	rs10920678-A	0.435166011232214	4E-10		0.016999872	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2036	chr1	190239906	190239907	rs10920678	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q31.1	FAM5C	rs10920678-A	0.441	1E-6	(EA)	0.015	[0.0086-0.0208] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2036	chr1	190239906	190239907	rs10920678	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q31.1	FAM5C	rs10920678-A	0.439	9E-7		0.014	[0.0087-0.0201] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2036	chr1	190277482	190277483	rs1899444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	1q31.1		rs1899444-A	0.636876	4E-10		0.020684	[0.014-0.027] unit decrease	Illumina [13479178] (imputed)	N
2036	chr1	190277705	190277706	rs3098843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q31.1		rs3098843-G	NR	4E-22		0.0186	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2036	chr1	190294725	190294726	rs815163	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q31.1	BRINP3	rs815163-T	0.436787	6E-15		0.0107541	[0.0081-0.0135] unit increase	Affymetrix [12370749]	N
2036	chr1	190294725	190294726	rs815163	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q31.1	NR	rs815163-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
2036	chr1	190294725	190294726	rs815163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q31.1		rs815163-?	NR	1E-15				NR [~ 8900000] (imputed)	N
2036	chr1	190308833	190308834	rs491055	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q31.1	BRINP3	rs491055-G	0.63	3E-10	(Japanese)	0.022	[0.014-0.03] unit decrease	Illumina [6108953] (imputed)	N
2037	chr1	190376437	190376438	rs61818787	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Vascular endothelial growth factor levels	21,758 European ancestry individuals	9,173 individuals	1q31.1		rs61818787-T	0.81	6E-6		0.0622	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2037	chr1	190385303	190385304	rs1171044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q31.1	Intergenic	rs1171044-T	0.7792	4E-9	(MTAG)	0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2037	chr1	190400983	190400984	rs1171040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.1		rs1171040-A	0.7866	5E-11		0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2037	chr1	190400983	190400984	rs1171040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q31.1	Intergenic	rs1171040-A	0.7866	9E-13	(MTAG)	0.0115	[0.0084-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2038	chr1	190453671	190453672	rs1697593	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	1q31.1	NR	rs1697593-T	0.483	4E-8		1.028	[1.02-1.04]	NR [8968716] (imputed)	N
2039	chr1	190624532	190624533	rs595995	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q31.1	NR	rs595995-C	0.31	9E-6	(IFNalpha_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-T	0.5129	8E-9	(women)	0.0319	[0.021-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-T	0.5114	8E-8		0.0243	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-?	NR	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-?	NR	1E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-T	0.5114	4E-8	(women)	0.0282	[0.018-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190670883	190670884	rs1998710	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q31.1	LOC440704, RGS18	rs1998710-T	0.5114	3E-7		0.0206	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2039	chr1	190679981	190679982	rs12090181	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Body fat mass	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	1q31.1	NR	rs12090181-?		4E-8		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
2039	chr1	190679981	190679982	rs12090181	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1q31.1	LOC440704	rs12090181-T	NR	1E-6		0.09	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
2039	chr1	190679981	190679982	rs12090181	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	1q31.1	LOC440704	rs12090181-T	NR	5E-7				Affymetrix, Illumina [12061510] (imputed)	N
2040	chr1	190777566	190777567	rs482039	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	1q31.2	NR	rs482039-T	0.02	4E-7		2.37	1.70-3.31	NR [8814543] (imputed)	N
2040	chr1	190781498	190781499	rs78620960	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to selective serotonin reuptake inhibitors and depression	3,340 European ancestry non-responder cases, 191,882  European ancestry healthy controls	NA	1q31.2	FAM5C	rs78620960-?		2E-6		1.2033695	[1.12-1.3]	Illumina [~ 12000000] (imputed)	N
2040	chr1	190804629	190804630	rs2489676	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q31.2	NR	rs2489676-A	NR	1E-6		0.009867	[0.0058-0.0139] unit increase	Illumina [~ 540852]	N
2040	chr1	190811487	190811488	rs7529733	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	1q31.2	LOC440704, RGS18	rs7529733-A	NR	3E-7		0.0431	[NR] unit increase	Illumina [1124301]	N
2041	chr1	190841672	190841673	rs2053302	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1q31.2	FAM5C, LOC647132	rs2053302-T	0.18	4E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
2041	chr1	190853792	190853793	rs10920828	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.2	NR	rs10920828-?	NR	5E-17				Affymetrix [NR]	N
2041	chr1	190900575	190900576	rs10800992	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q31.2	NR	rs10800992-T	0.4431	4E-12		1.043	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2041	chr1	190900575	190900576	rs10800992	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q31.2	NA	rs10800992-T	0.4401	2E-8	(Female)	1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
2041	chr1	190940626	190940627	rs12139672	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q31.2	LOC440704	rs12139672-G	NR	4E-8		1.0626993	[1.04-1.08]	Illumina [6627481] (imputed)	N
2041	chr1	190940626	190940627	rs12139672	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q31.2	LOC440704	rs12139672-G	NR	4E-6	(EA)	1.064396	[1.04-1.09]	Illumina [6627481] (imputed)	N
2041	chr1	190940626	190940627	rs12139672	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q31.2	intergenic	rs12139672-G	NR	3E-7		1.0570824	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2041	chr1	190940626	190940627	rs12139672	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q31.2	NR	rs12139672-G	NR	4E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2041	chr1	190955572	190955573	rs76075334	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	1q31.2	LOC440704, RGS18	rs76075334-G	NR	3E-6		0.04234	[NR] unit increase	Illumina [1124301]	N
2041	chr1	190957479	190957480	rs35656245	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q31.2	NR	rs35656245-A	0.276	2E-8		0.00682373	[0.0045-0.0092] unit increase	NR [9732723] (imputed)	N
2041	chr1	190957479	190957480	rs35656245	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q31.2	NR	rs35656245-A	0.276	2E-8		0.01594564	[0.01-0.022] unit increase	NR [~ 10000000] (imputed)	N
2041	chr1	190957588	190957589	rs7541875	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	1q31.2	NR	rs7541875-A	0.57	2E-8		0.027	unit decrease	NR [2324712] (imputed)	N
2042	chr1	191000518	191000519	rs6668943	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q31.2	NA	rs6668943-T		4E-9		0.0109777	[0.0073-0.0146] unit increase	Illumina [13288253] (imputed)	N
2042	chr1	191027947	191027948	rs10920885	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	1q31.2	NR	rs10920885-T	NR	1E-8		5.726	NR z score decrease	NR [NR]	N
2042	chr1	191027947	191027948	rs10920885	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	1q31.2	LOC440704, RP11-309H21.3	rs10920885-T	0.8132	2E-9		0.031536933	[0.021-0.042] unit decrease	NR [NR]	N
2042	chr1	191037314	191037315	rs10801015	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Completion of the aide-memoire	361,501 European ancestry cases, 89,535 European ancestry controls	NA	1q31.2	NR	rs10801015-G	0.42	1E-8		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
2042	chr1	191044822	191044823	rs71637264	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q31.2	BRINP3	rs71637264-A	0.805	1E-13		0.0111	[0.0082-0.014] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2042	chr1	191044822	191044823	rs71637264	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q31.2	BRINP3	rs71637264-A	0.8182	1E-12		0.017958388	[0.013-0.023] unit increase	Illumina [9339358] (imputed)	N
2043	chr1	191105830	191105831	rs72740408	31482010	Liu C	2019-08-29	NPJ Genom Med	Genome-wide association study for proliferative diabetic retinopathy in Africans.	Proliferative diabetic retinopathy	64 African ancestry cases, 227 African ancestry controls	19 African American cases, 50 African American controls	1q31.2	AL713866.1	rs72740408-A	0.03	2E-8		1.52	[1.31-1.76]	Affymetrix, Illumina [18433741] (imputed)	N
2043	chr1	191115098	191115099	rs72740410	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q31.2	NR	rs72740410-T		1E-8		0.0465852	[0.031-0.063] unit increase	NR [6694342]	N
2043	chr1	191124044	191124045	rs11807971	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1q31.2	NR	rs11807971-C	0.611	2E-6		0.0126	[0.0074-0.0178] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
2045	chr1	191380139	191380140	rs78449954	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.2	NR	rs78449954-A	0.0122	2E-8	(CNN2)	0.01776	NR unit increase	Illumina [1671387] (imputed)	N
2045	chr1	191380139	191380140	rs78449954	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.2	NR	rs78449954-A	0.0122	1E-8	(DPYSL2)	0.2803	NR unit increase	Illumina [1671387] (imputed)	N
2045	chr1	191391662	191391663	rs9651063	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q31.2	NR	rs9651063-A	NR	7E-6		0.009466	[0.0054-0.0136] unit decrease	Illumina [~ 540852]	N
2046	chr1	191510124	191510125	rs677325	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	1q31.2	NR	rs677325-C	0.8681	1E-8		0.0154	[0.01-0.021] unit increase	Illumina [NR] (imputed)	N
2046	chr1	191547993	191547994	rs867426	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q31.2	intergenic	rs867426-C	0.697939924881693	4E-6	(G_unclassified_P_Proteobacteria_HB)	0.2399	[0.14-0.34] unit decrease	Illumina [7711310] (imputed)	N
2046	chr1	191559355	191559356	rs10801047	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	1q31.2	intergenic	rs10801047-?	0.08	3E-8		1.47	[1.22-1.76]	Affymetrix [see WTCCC]	N
2046	chr1	191582658	191582659	rs16833628	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.2	NR	rs16833628-T	0.01045	6E-9	(ACADS)	0.8726	NR unit increase	Illumina [1671387] (imputed)	N
2047	chr1	191632686	191632687	rs114078732	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q31.2	NR	rs114078732-?	NR	7E-6		0.083417	[0.047-0.12] unit increase	Affymetrix [805426] (imputed)	N
2047	chr1	191727890	191727891	rs16833751	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q31.2	RGS21	rs16833751-?	NR	5E-6	(quinolinic acid)	1.2886862	[0.73-1.84] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2048	chr1	191801132	191801133	rs11588454	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	1q31.2	intergenic	rs11588454-T	0.75	8E-8	(Hispanic, males)	0.124	[0.079-0.169] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2048	chr1	191801132	191801133	rs11588454	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	1q31.2	NR	rs11588454-T	0.75	3E-6	(Males)	0.069	[0.040-0.098] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2049	chr1	191939787	191939788	rs17403780	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q31.2	NR	rs17403780-T	0.910622742901786	1E-6	(IGP10)	0.3351	[0.2-0.47] unit decrease	Illumina [~ 2500000] (imputed)	N
2049	chr1	191939787	191939788	rs17403780	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q31.2	NR	rs17403780-T	0.910603886426346	6E-6	(IGP45)	0.3134	[0.18-0.45] unit decrease	Illumina [~ 2500000] (imputed)	N
2049	chr1	191939787	191939788	rs17403780	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q31.2	NR	rs17403780-T	0.910564153517364	7E-6	(IGP68)	0.3113	[0.18-0.45] unit decrease	Illumina [~ 2500000] (imputed)	N
2049	chr1	191961992	191961993	rs143077787	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	1q31.2		rs143077787-?	NR	5E-6		0.7795916	[0.45-1.11] unit decrease	Illumina [9875426] (imputed)	N
2049	chr1	191990366	191990367	rs191506206	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.2	Intergenic	rs191506206-G	0.999	3E-6	(AA)	1.375	NR unit increase	Illumina [NR] (imputed)	N
2050	chr1	192032125	192032126	rs17412890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.2	NR	rs17412890-G	0.01045	4E-9	(CNN2)	0.01997	NR unit increase	Illumina [1671387] (imputed)	N
2050	chr1	192035025	192035026	rs12126348	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	1q31.2	RGS21, RGS18	rs12126348-T	0.03	2E-7	(mYscore, continuous)	0.27	unit decrease	Affymetrix, Illumina [~ 31000000] (imputed)	N
2050	chr1	192043456	192043457	rs138157192	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.2	Intergenic	rs138157192-A	0.999	2E-6	(AA)	1.452	NR unit increase	Illumina [NR] (imputed)	N
2050	chr1	192085297	192085298	rs12569272	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q31.2	RGS18	rs12569272-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
2051	chr1	192208346	192208347	rs1175109	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q31.2	NA	rs1175109-C		4E-10		0.0114351	[0.0079-0.015] unit decrease	Illumina [13288253] (imputed)	N
2052	chr1	192290033	192290034	rs187061080	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.2	RGS21	rs187061080-A	0.999	3E-6	(AA)	1.501	NR unit increase	Illumina [NR] (imputed)	N
2053	chr1	192414421	192414422	rs6704162	29374629	Ortiz-Fernandez L	2018-01-27	Ann Rheum Dis	Cross-phenotype analysis of Immunochip data identifies <i>KDM4C</i> as a relevant <i>locus</i> for the development of systemic vasculitis.	Systemic vasculitis	2,425 European ancestry cases, 4,526 European ancestry controls	NA	1q31.2	RGS21, RGS1	rs6704162-G		4E-6		1.25	[1.14-1.37]	Illumina [191948]	N
2053	chr1	192427328	192427329	rs4658030	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1q31.2		rs4658030-G	0.982816	4E-6		0.0490466	[0.028-0.07] unit decrease	Illumina [13900000] (imputed)	N
2053	chr1	192427328	192427329	rs4658030	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 2 electroencephalogram power	191 European ancestry individuals	NA	1q31.2	NR	rs4658030-?	NR	2E-6		0.03	NR unit decrease	Affymetrix [388620]	N
2053	chr1	192431997	192431998	rs12067906	22763476	Zhang D	2012-07-05	Hypertens Res	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NA	1q31.2	PPP3CA, RGS21	rs12067906-?	NR	9E-7				Affymetrix [~ 900000]	N
2053	chr1	192523916	192523917	rs17676711	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	1q31.2		rs17676711-?	NR	2E-7		2.14014	[1.85-2.43]	NR [666300]	N
2053	chr1	192524992	192524993	rs3011685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q31.2		rs3011685-?	NR	3E-21				NR [~ 8900000] (imputed)	N
2053	chr1	192536812	192536813	rs2816316	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q31.2	RGS1	rs2816316-?	0.84	2E-17		1.25	[1.19-1.32]	Illumina [292387]	N
2053	chr1	192536812	192536813	rs2816316	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	1q31.2	RGS1	rs2816316-C	NR	3E-11		1.39	[1.26-1.53]	Illumina [310605]	N
2053	chr1	192539336	192539337	rs2816313	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q31.2	RGS1	rs2816313-A	0.719	5E-9		1.09		Illumina [715631] (imputed)	N
2053	chr1	192539336	192539337	rs2816313	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q31.2	RGS1	rs2816313-A	0.719	5E-9		1.09		Illumina [715631] (imputed)	N
2053	chr1	192541020	192541021	rs1323292	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q31.2	RGS21	rs1323292-A	NR	4E-33		1.1625	NR	Affymetrix, Illumina [8278136] (imputed)	N
2053	chr1	192541020	192541021	rs1323292	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	1q31.2	Intergenic	rs1323292-?	NR	2E-8		1.1227125		Illumina [~ 460000] (imputed)	N
2053	chr1	192541020	192541021	rs1323292	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or multiple sclerosis	3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls	NA	1q31.2	Intergenic	rs1323292-?	NR	5E-8		1.1111112		Illumina [~ 460000] (imputed)	N
2053	chr1	192541020	192541021	rs1323292	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q31.2	RGS1	rs1323292-A	NR	2E-8		1.12	[1.1-1.14]	Illumina [465434]	N
2053	chr1	192541471	192541472	rs1359062	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	1q31.2	RGS1	rs1359062-?		4E-30		1.3264511		Illumina [252970]	N
2053	chr1	192541471	192541472	rs1359062	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q31.2	RGS1	rs1359062-C	0.83	5E-20		1.15		Illumina [161311]	N
2053	chr1	192541471	192541472	rs1359062	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1q31.2	RGS1	rs1359062-G	0.82	3E-25		1.2987013		Illumina [139553]	N
2053	chr1	192543836	192543837	rs1547624	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	1q31.2	RGS21, RGS1	rs1547624-T	NR	2E-7		1.13	[1.08-1.18]	Illumina [NR] (imputed)	N
2053	chr1	192543836	192543837	rs1547624	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	1q31.2	RGS21, RGS1	rs1547624-T	NR	5E-8		1.172	[1.12-1.23]	Illumina [5719137] (imputed)	N
2054	chr1	192544794	192544795	rs2984920	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q31.2	RGS1	rs2984920-?	NR	2E-6		1.1627907	[1.09-1.23]	Illumina [at least 5000000] (imputed)	N
2054	chr1	192545098	192545099	rs7535818	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	1q31.2	RGS1	rs7535818-?		2E-15		1.3157895		Illumina [at least 8143088] (imputed)	N
2054	chr1	192581962	192581963	rs181723550	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q31.2	RGS13	rs181723550-T	0.9953	6E-6		0.3336	[0.19-0.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2054	chr1	192587862	192587863	rs10921219	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	1q31.2	intergenic	rs10921219-?		4E-6	(overall survival)	1.9	[1.44-2.49]	Illumina [729737]	N
2054	chr1	192627759	192627760	rs3818329	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	1q31.2	NR	rs3818329-?	NR	2E-7		1.865	[1.474-2.361]	Affymetrix, Illumina [6717712] (imputed)	N
2054	chr1	192667886	192667887	rs16834649	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	1q31.2	RGS13	rs16834649-T	NR	2E-6		16.6214	[9.85-23.4] unit increase	Illumina [6097251] (imputed)	N
2054	chr1	192673524	192673525	rs33945715	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.2	NR	rs33945715-?	NR	7E-7				Affymetrix [NR]	N
2055	chr1	192703971	192703972	rs34624213	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	1q31.2	RGS2	rs34624213-A	NR	4E-6		16.2055	[9.46-22.95] unit increase	Illumina [6097251] (imputed)	N
2055	chr1	192715070	192715071	rs3753947	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	1q31.2	RGS2	rs3753947-T	NR	5E-6		16.0195	[9.27-22.77] unit increase	Illumina [6097251] (imputed)	N
2055	chr1	192771374	192771375	rs1890399	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q31.2	RGS13	rs1890399-?	NR	9E-6	(TAG 56:7)	0.15225336	[0.085-0.219] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2055	chr1	192774476	192774477	rs77609503	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q31.2	NR	rs77609503-?		6E-6				Illumina [4322238] (imputed)	N
2055	chr1	192806240	192806241	rs7550636	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q31.2	RGS2	rs7550636-T	0.88	4E-6	(AA)	0.25	[0.13-0.37] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
2056	chr1	192817890	192817891	rs111732913	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1q31.2		rs111732913-C	0.979466	4E-6		0.0427076	[0.024-0.061] unit decrease	Illumina [13900000] (imputed)	N
2056	chr1	192893074	192893075	rs10921288	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	1q31.2	intergenic	rs10921288-C	0.0235	1E-8		1.4656063	[0.96-1.97] % increase	Illumina [24111857] (imputed)	N
2057	chr1	192971538	192971539	rs4658079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q31.2		rs4658079-G	NR	4E-8		0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2057	chr1	192991782	192991783	rs10921304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q31.2		rs10921304-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2057	chr1	192995212	192995213	rs9427573	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	1q31.2	UCHL5	rs9427573-?	NR	5E-6		2.56	[1.71-3.82]	Illumina [948142]	N
2057	chr1	193057970	193057971	rs10737620	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	1q31.2	NR	rs10737620-?		3E-9		0.0144141	[0.0097-0.0192] unit increase	Affymetrix [19400418] (imputed)	N
2058	chr1	193074510	193074511	rs148212596	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.2	GLRX2	rs148212596-G	0.02	4E-41	(Glutaredoxin-2, mitochondrial, GLRX2.12486.8.3)	1.18	[1-1.36] unit increase	Affymetrix [10572788] (imputed)	N
2058	chr1	193128609	193128610	rs34793300	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	1q31.2	NR	rs34793300-?	NR	4E-6		0.0969	[0.056-0.138] unit decrease	Illumina [at least 560000] (imputed)	N
2059	chr1	193203491	193203491	rs200922190	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Ovarian disease with few adhesions	1,686 European ancestry cases, 7,060 European ancestry controls.		1q31.2	CDC73	rs200922190-?	NR	2E-7		1.2048193	[1.10-1.33]	Illumina [NR] (imputed)	N
2059	chr1	193276974	193276975	rs1221502	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q31.2	CDC73	rs1221502-A	0.7386	1E-8		1.0198953		Affymetrix [11880941] (imputed)	N
2059	chr1	193281305	193281306	rs746280296	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1q31.2	LINC01031	rs746280296-T	0.9984	7E-6		1.2299	[0.69-1.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2059	chr1	193295287	193295288	rs59264807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	1q31.2		rs59264807-T	NR	4E-8		0.0376	[0.024-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2059	chr1	193295738	193295739	rs16835282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q31.2		rs16835282-?	NR	2E-7				NR [~ 8900000] (imputed)	N
2059	chr1	193305722	193305723	rs7543029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1q31.2		rs7543029-C	NR	2E-8		0.0388	[0.025-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2060	chr1	193341117	193341118	rs12025393	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q31.2		rs12025393-A	0.2653	2E-8		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2061	chr1	193483502	193483503	rs186610731	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q31.2	NR	rs186610731-T	NR	9E-6		0.4151	[0.23-0.6] unit increase	Illumina [11133794] (imputed)	N
2061	chr1	193502608	193502609	rs6692705	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	1q31.2	Intergenic	rs6692705-A	0.4	1E-6		1.066	[NR]	Illumina [9112387] (imputed)	N
2061	chr1	193533131	193533132	rs116615337	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	1q31.2	NR	rs116615337-G	NR	5E-6		0.1278	[0.073-0.182] SD units decrease	NR [10700000] (imputed)	N
2062	chr1	193625232	193625233	rs6678275	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	1q31.2	intergenic	rs6678275-C	0.169	3E-7		1.09	[1.05-1.13]	Illumina [7055881] (imputed)	N
2062	chr1	193639626	193639627	rs149819415	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.2	Intergenic	rs149819415-G	1.0	2E-6	(AA)	0.881	unit increase	Illumina [NR] (imputed)	N
2062	chr1	193673741	193673742	rs6656472	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fournierella massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	1q31.2		rs6656472-C	0.138166	3E-8		0.0466433	[0.03-0.063] unit decrease	Illumina [7980478] (imputed)	N
2063	chr1	193734899	193734900	rs2025934	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q31.2	CDC73	rs2025934-G	0.93	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
2063	chr1	193762728	193762729	rs113943039	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q31.2	RPL23AP22	rs113943039-G	NR	1E-6	(daytime napping duration)	0.2695	[0.16-0.38] unit increase	Affymetrix [7141204] (imputed)	N
2063	chr1	193833930	193833931	rs72734655	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	1q31.3	NR	rs72734655-?	NR	8E-7		0.2312	[0.14-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
2063	chr1	193837654	193837655	rs186657815	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs186657815-C	NR	8E-6		1.7635	[1.01-2.52] unit decrease	Illumina [NR] (imputed)	N
2064	chr1	193897884	193897885	rs479618	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	1q31.3	Intergenic	rs479618-?		3E-6		1.36	[1.19-1.55]	Illumina [NR]	N
2064	chr1	193900264	193900265	rs12078905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs12078905-C	0.02787	3E-9	(VAPA)	0.03496	NR unit increase	Illumina [1671387] (imputed)	N
2064	chr1	193909021	193909022	rs79991130	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	1q31.3	NR	rs79991130-?	NR	3E-6		1.7924654	[1.41-2.29]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2064	chr1	193921547	193921548	rs606149	20516156	Lewis CM	2010-06-01	Am J Psychiatry	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	1q31.3	LOC647167	rs606149-?	0.46	3E-6		1.25	[NR]	Illumina [471747]	N
2064	chr1	193926704	193926705	rs72740932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q31.3	Intergenic	rs72740932-C	0.8072	4E-8		0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2064	chr1	193936938	193936939	rs61406265	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	1q31.3	CDC73	rs61406265-?	NR	3E-11		1.091703	[1.06-1.12]	Illumina [13729857] (imputed)	N
2064	chr1	193958319	193958320	rs651691	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	1q31.3	intergenic	rs651691-T	0.5531	6E-6		0.0317	NR unit increase	NR [NR] (imputed)	N
2064	chr1	193962389	193962390	rs71642944	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	1q31.3	CDC73	rs71642944-A	0.05	7E-7	(Hispanic)			Affymetrix, Illumina [14227402] (imputed)	N
2066	chr1	194155823	194155824	rs16836466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs16836466-G	0.02265	8E-10	(SPTAN1)	0.3443	NR unit increase	Illumina [1671387] (imputed)	N
2066	chr1	194155823	194155824	rs16836466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs16836466-G	0.02265	2E-12	(AP1G2)	0.02515	NR unit increase	Illumina [1671387] (imputed)	N
2066	chr1	194161206	194161207	rs16836502	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs16836502-A	0.02265	8E-10	(SPTAN1)	0.3443	NR unit increase	Illumina [1671387] (imputed)	N
2066	chr1	194211194	194211195	rs61815623	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	1q31.3	LINC01031, KCNT2	rs61815623-T	0.032	9E-6		1.74	[1.25-2.44]	Affymetrix [up to 27494467] (imputed)	N
2067	chr1	194252449	194252450	rs74131475	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	1q31.3	LOC107985242, EEF1A1P14, RNU6-983P	rs74131475-T	0.089	3E-8				Illumina [5088365] (imputed)	N
2067	chr1	194259457	194259458	rs10921528	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	1q31.3	Intergenic	rs10921528-G	0.34	1E-7	(male)	0.1	[0.061-0.139] unit decrease	Illumina [11973598] (imputed)	N
2067	chr1	194304088	194304089	rs2400330	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q31.3	B3GALT2	rs2400330-?	NR	8E-6	(uridine)	0.6632941	[0.37-0.96] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2067	chr1	194310550	194310551	rs76006717	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of glucose	1,757 European ancestry twins	NA	1q31.3	RP11-476H20.1	rs76006717-C	0.05	1E-6		0.4	[0.24-0.56] unit increase	Illumina [4381914] (imputed)	N
2067	chr1	194329560	194329561	rs10921544	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	1q31.3	CDC73, KCNT2	rs10921544-T	0.05	3E-7	(Turkish)	2.59	[1.78-3.78]	Illumina [up to 547389]	N
2067	chr1	194346505	194346506	rs74512030	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q31.3	NR	rs74512030-A	0.051	4E-7	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
2067	chr1	194357335	194357336	rs4428865	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	1q31.3	LOC102723336	rs4428865-?		7E-7				Illumina [5970354] (imputed)	N
2069	chr1	194530913	194530914	rs3001167	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q31.3	EEF1A1P14	rs3001167-G	0.316	3E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
2069	chr1	194549025	194549026	rs79237515	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs79237515-T	0.998	3E-7	(AA)	1.326	NR unit increase	Illumina [NR] (imputed)	N
2069	chr1	194591752	194591753	rs13376197	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1q31.3	B3GALT2	rs13376197-?		3E-10				Illumina [563980]	N
2069	chr1	194591752	194591753	rs13376197	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	1q31.3	B3GALT2	rs13376197-?		4E-7				Illumina [563980]	N
2069	chr1	194635581	194635582	rs3001189	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q31.3	NR	rs3001189-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2070	chr1	194650445	194650446	rs12141663	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs12141663-?	NR	6E-6				Affymetrix [NR]	N
2070	chr1	194665177	194665178	rs16837328	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q31.3	NR	rs16837328-?		5E-6				Illumina [4322238] (imputed)	N
2070	chr1	194689351	194689352	rs76813632	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs76813632-A	0.0122	1E-8	(HINT1)	0.2445	NR unit decrease	Illumina [1671387] (imputed)	N
2070	chr1	194689513	194689514	rs138325697	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs138325697-T	0.997	4E-7	(AA)	1.132	NR unit increase	Illumina [NR] (imputed)	N
2070	chr1	194759057	194759058	rs144324177	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs144324177-T	0.998	7E-7	(AA)	1.171	NR unit increase	Illumina [NR] (imputed)	N
2071	chr1	194861620	194861621	rs144276489	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs144276489-A	0.997	4E-6	(AA)	1.032	NR unit increase	Illumina [NR] (imputed)	N
2071	chr1	194884654	194884655	rs78702938	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs78702938-G	0.997	5E-7	(AA)	1.088	NR unit increase	Illumina [NR] (imputed)	N
2072	chr1	194965199	194965200	rs2400414	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q31.3	NA	rs2400414-T	0.3461	6E-13		0.0126	[0.0091-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
2072	chr1	194994724	194994725	rs78544923	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1q31.3	CDC73, KCNT2	rs78544923-G	0.02	1E-6	(African American)	0.38	[0.22-0.54] unit decrease	Illumina [up to 13042663] (imputed)	N
2072	chr1	194995130	194995131	rs11580861	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	1q31.3	NR	rs11580861-T	0.031	3E-7		3.3	[2.08-5.22]	Illumina [7261187] (imputed)	N
2072	chr1	195018835	195018836	rs10921744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q31.3	NR	rs10921744-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2072	chr1	195030005	195030006	rs4657793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q31.3		rs4657793-A	NR	3E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2073	chr1	195037000	195037001	rs4474229	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q31.3	NA	rs4474229-A	0.3401	4E-12		0.013	[0.0093-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
2073	chr1	195052204	195052205	rs10754132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q31.3		rs10754132-T	NR	9E-11		0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2073	chr1	195140567	195140568	rs76975266	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	1q31.3	NR	rs76975266-?		5E-7		0.009	[0.0054-0.0126] unit increase	Illumina [7533529] (imputed)	N
2073	chr1	195142844	195142845	rs672313	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q31.3	NR	rs672313-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
2073	chr1	195142844	195142845	rs672313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q31.3		rs672313-?	NR	2E-13				NR [~ 8900000] (imputed)	N
2073	chr1	195148295	195148296	rs76702514	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q31.3	KCNT2	rs76702514-C	0.789394	2E-9		0.0101367	[0.0068-0.0134] unit increase	Affymetrix [12370749]	N
2074	chr1	195245179	195245180	rs16838228	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs16838228-?	NR	2E-7				Affymetrix [NR]	N
2074	chr1	195275703	195275704	rs17661899	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics individuals	NA	1q31.3	NR	rs17661899-?	NR	4E-8		6.0	unit decrease	NR [14100000] (imputed)	N
2076	chr1	195454556	195454557	rs4657983	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q31.3	KCNT2	rs4657983-G	0.3489	8E-11		1.0255202		Affymetrix [11880941] (imputed)	N
2076	chr1	195458696	195458697	rs76650281	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFH	5,346 Icelandic ancestry individuals	NA	1q31.3		rs76650281-G	0.01317	1E-16		0.665113	[0.51-0.82] unit decrease	Illumina [7506463] (imputed)	N
2076	chr1	195466149	195466150	rs74967706	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q31.3	NR	rs74967706-?	NR	5E-9				Illumina [7760689] (imputed)	N
2076	chr1	195492344	195492345	rs1582156	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	1q31.3	intergenic	rs1582156-?		4E-6	(PC2)	0.0716	[NR] unit decrease	Illumina [4167292] (imputed)	N
2076	chr1	195509948	195509949	rs16838525	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	1q31.3	NR	rs16838525-C	0.1463	7E-8	(recessive, male)	6.944153	[3.43045189392531-14.0568243961381]	Affymetrix, Illumina [6131010] (imputed)	N
2076	chr1	195531422	195531423	rs1890645	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	1q31.3	intergenic	rs1890645-?	0.30	4E-6		2.98	[1.88-4.73]	Illumina [346110]	N
2077	chr1	195651518	195651519	rs17626293	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	1q31.3	Intergenic	rs17626293-?		7E-6		2.1159544	[NR]	Affymetrix [492217] (imputed)	N
2077	chr1	195682051	195682052	rs10921895	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure (education interaction)	1,518 African American individuals with high school education, 731 African American individuals with college education, 328 African American individuals with less than high school education	NA	1q31.3	intergenic	rs10921895-?	0.37	4E-6		1.55	[0.84-2.26] mmHg decrease	Illumina [115834]	N
2077	chr1	195682051	195682052	rs10921895	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure	2,577 African American Individuals	NA	1q31.3	intergenic	rs10921895-?	0.37	5E-6		1.52	mmHg decrease	Illumina [115834]	N
2078	chr1	195743659	195743660	rs74507156	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs74507156-A	1.0	1E-6	(AA)	0.454	unit increase	Illumina [NR] (imputed)	N
2078	chr1	195743659	195743660	rs74507156	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs74507156-A	1.0	4E-6	(AA)	2.162	NR unit increase	Illumina [NR] (imputed)	N
2078	chr1	195774563	195774564	rs990926	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs990926-?	NR	4E-6				Affymetrix [NR]	N
2078	chr1	195790657	195790658	rs6677435	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	1q31.3	intergenic	rs6677435-?	NR	9E-6	(EA)			Illumina [37426733] (imputed)	N
2078	chr1	195791596	195791597	rs114864108	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1q31.3	NONE, KCNT2	rs114864108-A	0.979200902	3E-6		1.3381778	[1.18-1.51]	Illumina [10439017] (imputed)	N
2078	chr1	195801360	195801361	rs4489536	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs4489536-?	NR	4E-6				Affymetrix [NR]	N
2078	chr1	195810947	195810948	rs189354479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs189354479-G	1.0	7E-8	(AA)	0.615	unit increase	Illumina [NR] (imputed)	N
2078	chr1	195810947	195810948	rs189354479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	Intergenic	rs189354479-G	1.0	2E-6	(AA)	2.728	NR unit increase	Illumina [NR] (imputed)	N
2079	chr1	195835130	195835131	rs7534788	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	1q31.3	KCNT2	rs7534788-?	NR	1E-18		1.097	[1.075-1.120]	Illumina [13729857] (imputed)	N
2079	chr1	195914272	195914273	rs7517337	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	1q31.3	KCNT2	rs7517337-?	NR	2E-6		0.003	[NR] unit increase	Illumina [478011]	N
2080	chr1	196000243	196000244	rs3008590	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs3008590-?	NR	8E-7				Affymetrix [NR]	N
2080	chr1	196024841	196024842	rs79548498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q31.3	NR	rs79548498-A	0.027765999999999957	3E-8		0.0147652	[0.0097-0.0198] unit increase	Affymetrix [16582909] (imputed)	N
2080	chr1	196024841	196024842	rs79548498	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q31.3	NR	rs79548498-A	0.027765999999999957	6E-6		0.014078	[0.0084-0.0197] unit increase	Affymetrix [16582965] (imputed)	N
2080	chr1	196042661	196042662	rs7512769	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA		NR	rs7512769-?	NR	2E-6		1.2898	[NR]	Affymetrix [722112]	N
2081	chr1	196149935	196149936	rs4658019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.3		rs4658019-T	0.4531	2E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2081	chr1	196149935	196149936	rs4658019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q31.3	Intergenic	rs4658019-T	0.4531	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2081	chr1	196173863	196173864	rs147542932	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		1q31.3	NR	rs147542932-C	0.0605838	3E-6		1.128	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
2082	chr1	196230998	196230999	rs16839682	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q31.3	NR	rs16839682-?	NR	7E-28				Affymetrix [NR]	N
2082	chr1	196239001	196239002	rs192461268	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs192461268-A	NR	2E-8		3.3866	[2.25-4.52] unit decrease	Illumina [NR] (imputed)	N
2082	chr1	196265544	196265545	rs72732232	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs72732232-A	NR	2E-10		0.51581	[0.36-0.67] unit decrease	Illumina [NR] (imputed)	N
2082	chr1	196269760	196269761	rs191211294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q31.3	KCNT2	rs191211294-A	0.999	4E-6	(AA)	1.47	NR unit increase	Illumina [NR] (imputed)	N
2082	chr1	196303888	196303889	rs72732234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR5	rs72732234-C	0.019	8E-60	(Complement factor H-related protein 5, CFHR5.7885.17.3)	1.5	[1.32-1.68] unit decrease	Affymetrix [10572788] (imputed)	N
2082	chr1	196303888	196303889	rs72732234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR5	rs72732234-C	0.019	2E-44	(Complement factor H-related protein 5, CFHR5.3666.17.4)	1.3	[1.12-1.48] unit decrease	Affymetrix [10572788] (imputed)	N
2082	chr1	196314390	196314391	rs61820889	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs61820889-C	NR	4E-6		1.234	[0.72-1.75] unit decrease	Illumina [NR] (imputed)	N
2083	chr1	196349908	196349909	rs16839832	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q31.3	KCNT2	rs16839832-G	0.917759	4E-8		0.0140808	[0.0091-0.0191] unit decrease	Affymetrix [12370749]	N
2083	chr1	196353383	196353384	rs16839841	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	1q31.3		rs16839841-T	0.9188	3E-8		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2083	chr1	196376139	196376140	rs78042598	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs78042598-G	NR	9E-7		1.7751	[1.08-2.47] unit decrease	Illumina [NR] (imputed)	N
2083	chr1	196376139	196376140	rs78042598	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs78042598-G	NR	5E-9		16.746	[11.33-22.17] unit decrease	Illumina [NR] (imputed)	N
2083	chr1	196380157	196380158	rs187328863	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs187328863-?	NR	1E-68	(EA)	2.27		Illumina [12023830] (imputed)	N
2083	chr1	196441926	196441927	rs61820755	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	1q31.3		rs61820755-C	NR	5E-6		0.21558	[0.12-0.31] unit increase	Illumina [NR] (imputed)	N
2083	chr1	196448630	196448636	rs59335616	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs59335616-A	NR	5E-17		1.0396	[0.81-1.27] unit decrease	Illumina [NR] (imputed)	N
2084	chr1	196513693	196513694	rs10922082	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs10922082-A	NR	1E-6		0.92868	[0.56-1.29] unit decrease	Illumina [NR] (imputed)	N
2084	chr1	196522886	196522887	rs145379818	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs145379818-T	NR	7E-10		17.123	[11.89-22.36] unit decrease	Illumina [NR] (imputed)	N
2084	chr1	196529867	196529868	rs10754194	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q31.3	KCNT2	rs10754194-C	0.0867	1E-7		0.0159938	[0.01-0.022] unit decrease	Affymetrix [11880941] (imputed)	N
2084	chr1	196580038	196580039	rs10801551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q31.3	KCNT2	rs10801551-A	NR	1E-9		0.020584	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
2084	chr1	196584320	196584321	rs4657825	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C3	5,366 Icelandic ancestry individuals	NA	1q31.3		rs4657825-A	0.242	1E-14		0.171795	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
2084	chr1	196584320	196584321	rs4657825	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	KCNT2	rs4657825-G	0.771	6E-22	(Complement factor B, CFB.4129.72.1)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
2084	chr1	196584467	196584468	rs12061508	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q31.3	NR	rs12061508-A	0.2111	1E-7		0.0114	[0.0073-0.0155] unit increase	NR [~ 27400000] (imputed)	N
2084	chr1	196584467	196584468	rs12061508	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q31.3	NR	rs12061508-A	0.2113	9E-8		0.0114	[0.0073-0.0155] unit increase	NR [~ 27400000] (imputed)	N
2084	chr1	196592678	196592679	rs77460977	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs77460977-C	NR	1E-7		1.7792	[1.14-2.42] unit decrease	Illumina [NR] (imputed)	N
2084	chr1	196600390	196600391	rs3043084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q31.3		rs3043084-G	NR	5E-9		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2084	chr1	196603301	196603302	rs12029571	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,358 Icelandic ancestry individuals	NA	1q31.3		rs12029571-G	0.2444	1E-28		0.239688	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
2084	chr1	196603301	196603302	rs12029571	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs12029571-G	NR	8E-12		1.3845	[1.01-1.76] unit decrease	Illumina [NR] (imputed)	N
2084	chr1	196603301	196603302	rs12029571	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs12029571-G	NR	9E-30		1.4575	[1.24-1.68] unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196613172	196613173	rs148553336	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs148553336-?	NR	9E-26	(EA)	3.448276		Illumina [12023830] (imputed)	N
2085	chr1	196616908	196616909	rs481595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q31.3		rs481595-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2085	chr1	196619501	196619502	rs505102	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q31.3	NR	rs505102-C	0.23	9E-9		0.013	[0.0085-0.0175] unit increase	Affymetrix [2446094] (imputed)	N
2085	chr1	196619501	196619502	rs505102	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q31.3	NR	rs505102-C	0.23	5E-8				Affymetrix [2446094] (imputed)	N
2085	chr1	196620916	196620917	rs3753394	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	1q31.3	CFHR1, CFHR3, CFH	rs3753394-C	0.43	7E-11	(Serum level of C3)	0.05	[0.030-0.070] g/L decrease	Illumina [1940245] (imputed)	N
2085	chr1	196627537	196627537	rs549213437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q31.3	CFH	rs549213437-ATTTTT	NR	7E-10		0.0207709	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
2085	chr1	196632004	196632004	rs11390840	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs11390840-CA	0.226	7E-66	(Tyrosine-protein kinase Fyn, FYN.4550.3.2)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196632128	196632129	rs6690982	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	1q31.3	NR	rs6690982-?	NR	5E-23	(Complement factor H-related protein 2 (FHR-2))			Illumina [~ 4000000] (imputed)	N
2085	chr1	196635681	196635682	rs6660100	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM7	5,359 Icelandic ancestry individuals	NA	1q31.3		rs6660100-T	0.2411	2E-47		0.309471	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196635774	196635774	rs763228358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q31.3		rs763228358-AG,rs763228358-AG	0.753374	1E-8		0.0280921	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
2085	chr1	196635774	196635774	rs763228358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q31.3		rs763228358-AG,rs763228358-AG	0.753374	1E-8		0.0280921	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
2085	chr1	196642071	196642072	rs551397	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFB	5,365 Icelandic ancestry individuals	NA	1q31.3		rs551397-T	0.2419	9E-41		0.291216	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196642232	196642233	rs800292	32277175	Han X	2020-04-10	J Hum Genet	Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.	Age-related macular degeneration (MTAG)	37,342 European ancestry cases, 92,890 European ancestry controls	7,126 European ancestry cases, 174,286 European ancestry controls	1q31.3	CFH	rs800292-G	0.77	4E-421		2.0833335	[2-2.17]	NR [NR] (imputed)	N
2085	chr1	196642232	196642233	rs800292	30480742	Miki A	2018-11-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study to Identify a New Susceptibility Locus for Central Serous Chorioretinopathy in the Japanese Population.	Chronic central serous retinopathy	137 Japanese ancestry cases, 1,174 Japanese ancestry controls	183 Japanese ancestry cases, 2,071 Japanese ancestry controls	1q31.3	CFH	rs800292-?	NR	2E-6		1.484	[NR]	Illumina [548653]	N
2085	chr1	196642232	196642233	rs800292	29844195	Hosoda Y	2018-05-29	Proc Natl Acad Sci U S A	CFH and VIPR2 as susceptibility loci in choroidal thickness and pachychoroid disease central serous chorioretinopathy.	Sub-foveal choroidal thickness	3,418 Japanese ancestry individuals	2,692 Japanese ancestry individuals	1q31.3	CFH	rs800292-A	0.406	2E-10		10.27	[NR] unit increase	Illumina [4710779] (imputed)	N
2085	chr1	196642232	196642233	rs800292	29212897	Salminen A	2017-12-01	Circ Cardiovasc Genet	Genetic Variants Contributing to Circulating Matrix Metalloproteinase 8 Levels and Their Association With Cardiovascular Diseases: A Genome-Wide Analysis.	Matrix metalloproteinase-8 levels	6,049 Finnish ancestry individuals	NA	1q31.3	CFH, CFHR1, LOC100996886, CFHR4, CFHR5, ASPM	rs800292-A	0.3	2E-35		0.24	[0.2-0.28] unit decrease	Illumina [at least 2300000] (imputed)	N
2085	chr1	196642232	196642233	rs800292	28703135	Ruamviboonsuk P	2017-07-13	J Hum Genet	Genome-wide association study of neovascular age-related macular degeneration in the Thai population.	Neovascular age-related macular degeneration	377 Thai ancestry cases, 1,074 Thai ancestry controls	222 Thai ancestry cases, 623 Thai ancestry controls	1q31.3	CFH	rs800292-G	0.58	3E-8		1.67	[1.40-1.99]	Illumina [958497]	N
2085	chr1	196642232	196642233	rs800292	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		1q31.3	CFH	rs800292-A	0.23	5E-41		0.15	[0.13-0.17] unit decrease	Affymetrix, Illumina [2397181]	N
2085	chr1	196642532	196642533	rs559350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q31.3		rs559350-C	NR	9E-20		0.0267	[0.021-0.032] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2085	chr1	196646175	196646176	rs1329424	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q31.3	CFH	rs1329424-T	0.38	2E-31	(EA)	1.41	[1.33-1.49]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2085	chr1	196646175	196646176	rs1329424	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	1q31.3	CFH	rs1329424-T	0.351	6E-16		1.88	[1.68-2.10]	Illumina [~ 2500000] (imputed)	N
2085	chr1	196646260	196646261	rs572515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCF2	5,364 Icelandic ancestry individuals	NA	1q31.3		rs572515-A	0.3978	1E-13		0.143191	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196646260	196646261	rs572515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSKIP	5,362 Icelandic ancestry individuals	NA	1q31.3		rs572515-A	0.3978	1E-72		0.343782	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196646260	196646261	rs572515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTXN3	5,361 Icelandic ancestry individuals	NA	1q31.3		rs572515-A	0.3978	4E-14		0.143757	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196646260	196646261	rs572515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C10orf105	5,364 Icelandic ancestry individuals	NA	1q31.3		rs572515-A	0.3978	3E-12		0.13328	[0.096-0.171] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196646260	196646261	rs572515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANAPC7	5,359 Icelandic ancestry individuals	NA	1q31.3		rs572515-A	0.3978	4E-110		0.416451	[0.38-0.45] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	7E-12	(Uncharacterized protein C3orf18, C3orf18.6994.19.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	5E-12	(RecQ-mediated genome instability protein 1, RMI1.13926.1.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	3E-272	(Thiosulfate sulfurtransferase, TST.12663.1.3)	0.77	[0.73-0.81] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	2E-13	(C-type lectin domain family 4 member M, CLEC4M.3030.3.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	1E-75	(Growth arrest and DNA damage-inducible proteins-interacting protein 1, GADD45GIP1.9302.90.3)	0.45	[0.41-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196652124	196652124	rs33944729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs33944729-TA	0.613	1E-13	(Serine/threonine-protein kinase 16, STK16.3471.49.1)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196654323	196654324	rs1061147	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q31.3	CFH	rs1061147-A	0.37	7E-32		1.4	[1.32-1.48]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2085	chr1	196655742	196655743	rs10801553	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs10801553-C	0.613	6E-394	(NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial, NDUFS4.10584.7.3)	0.87	[0.83-0.91] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EFCAB14	5,360 Icelandic ancestry individuals	NA	1q31.3		rs570618-T	0.3973	3E-37		0.241276	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	8E-12	(Oncostatin-M, OSM.2693.20.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	6E-15	(Endogenous retrovirus group V member 1 Env polyprotein, ERVV.1.12531.5.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	5E-13	(Tumor necrosis factor receptor superfamily member 11B, TNFRSF11B.2526.53.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	3E-15	(Insulin growth factor-like family member 3, IGFL3.6961.14.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	2E-12	(Dual specificity protein kinase CLK2, CLK2.11327.56.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	1E-12	(Tumor necrosis factor receptor superfamily member 3, LTBR.2636.10.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs570618-G	0.611	1E-11	(Tyrosine-protein kinase FRK, FRK.10034.16.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196657063	196657064	rs570618	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs570618-?	NR	2E-590	(EA)	2.38		Illumina [12023830] (imputed)	N
2085	chr1	196658278	196658279	rs7529589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1B1	5,358 Icelandic ancestry individuals	NA	1q31.3		rs7529589-T	0.3975	2E-93		0.380272	[0.34-0.42] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196658278	196658279	rs7529589	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs7529589-T	0.3791541	2E-22	(EA, Properdin)	0.4252	[0.34-0.51] unit decrease	Affymetrix [509946]	N
2085	chr1	196659236	196659237	rs1061170	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	934 European ancestry individuals	NA	1q31.3		rs1061170-?		3E-22				Illumina [4278941] (imputed)	N
2085	chr1	196659236	196659237	rs1061170	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs1061170-T	0.613	2E-52	(Membrane-associated progesterone receptor component 2, PGRMC2.10631.9.3)	0.38	[0.34-0.42] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196659236	196659237	rs1061170	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	1q31.3	CFH	rs1061170-?	0.371	5E-67		2.78	[2.5-3.13]	Affymetrix, Illumina [6036699] (imputed)	N
2085	chr1	196659236	196659237	rs1061170	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	1q31.3	CFH	rs1061170-?	0.371	1E-108		2.78	[2.5-3.03]	Affymetrix, Illumina [6036699] (imputed)	N
2085	chr1	196659236	196659237	rs1061170	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	1q31.3	CFH	rs1061170-C	0.37	1E-261		2.41	[NR]	Affymetrix [6036699] (imputed)	N
2085	chr1	196659236	196659237	rs1061170	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	1q31.3	CFH	rs1061170-?	NR	4E-117				Affymetrix [632932]	N
2085	chr1	196659752	196659753	rs34331968	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs34331968-C	NR	2E-7		0.14011	[0.089-0.191] unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196659752	196659753	rs34331968	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q31.3	NR	rs34331968-T	0.533525	8E-20		0.0110574	[0.0087-0.0135] unit increase	Affymetrix [16585854] (imputed)	N
2085	chr1	196659752	196659753	rs34331968	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q31.3	NR	rs34331968-T	0.533525	2E-18		0.0122956	[0.0095-0.0151] unit increase	Affymetrix [16585866] (imputed)	N
2085	chr1	196660260	196660261	rs10801555	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	1q31.3	CFH	rs10801555-A	0.40	2E-47		2.33	[2.08-2.63]	Illumina [2272849] (imputed)	N
2085	chr1	196660463	196660464	rs10801556	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	896 European ancestry major depressive disorder cases, 934 European ancestry individuals	NA	1q31.3	CFH	rs10801556-?		7E-41		4253.0	[NR] unit decrease	Illumina [4278941] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF276	5,363 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-16		0.159313	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,359 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-13		0.137282	[0.1-0.175] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZAP70	5,357 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-20		0.174184	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ	5,364 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-14		0.142114	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WIF1	5,349 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-12		0.126862	[0.091-0.163] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-14		0.134935	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,349 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-14		0.140106	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.135899	[0.098-0.174] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM2	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-22		0.180619	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF11	5,335 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.12354	[0.089-0.158] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF8	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-13		0.139626	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF11B	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-16		0.15193	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMOD3	5,355 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.132706	[0.095-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.15041	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNCRIP	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-20		0.168772	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STIP1	5,349 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-13		0.135684	[0.099-0.172] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST6GALNAC2	5,347 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-15		0.141563	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST6GALNAC1	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-16		0.155297	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFRP2	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.12685	[0.091-0.163] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEL1L2	5,357 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.147375	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS10	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-12		0.127671	[0.091-0.164] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGS8	5,356 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-21		0.176014	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBP7	5,347 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-14		0.132813	[0.099-0.167] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBM24	5,360 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-12		0.136292	[0.099-0.174] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	8E-18		0.158579	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-19		0.159745	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB17	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-20		0.169134	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN1	5,343 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-19		0.156036	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG2	5,360 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.136669	[0.099-0.175] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPP2R3A	5,359 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-70		0.336287	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PON1	5,335 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-30		0.199013	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.130974	[0.095-0.167] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3CG	5,349 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	9E-20		0.163612	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFKFB3	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-17		0.157236	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.146523	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-21		0.175206	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAK3	5,337 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-13		0.126426	[0.093-0.16] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSM	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	9E-16		0.146216	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,346 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-13		0.136163	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-18		0.169379	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYOM3	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-13		0.138383	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYNN	5,359 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.153227	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPZL2	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-24		0.19106	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOCS3	5,351 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-14		0.137965	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MATN3	5,336 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-12		0.116871	[0.084-0.15] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein M6PR	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-17		0.158223	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LTA;LTB	5,339 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-13		0.131806	[0.097-0.167] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAYN	5,339 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-14		0.13379	[0.1-0.168] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK6	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-12		0.11853	[0.085-0.152] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK12	5,359 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-19		0.172838	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,351 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.129935	[0.093-0.167] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL34	5,345 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-16		0.146224	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-26		0.202017	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-17		0.155948	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,357 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-15		0.14929	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPAB	5,362 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.133525	[0.096-0.171] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSK3A;GSK3B	5,343 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.123105	[0.089-0.157] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPD1L	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-12		0.127772	[0.093-0.163] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-17		0.155475	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GAL3ST1	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-14		0.1414	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.124448	[0.09-0.159] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOLH1	5,337 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	5E-13		0.126087	[0.092-0.16] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FMR1	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	8E-16		0.146357	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER1A	5,348 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.14794	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD3	5,332 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-12		0.120349	[0.086-0.154] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD1	5,340 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-15		0.13769	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECE1	5,347 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-14		0.136542	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG1	5,349 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-19		0.165258	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DES	5,344 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.128614	[0.093-0.165] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB132	5,347 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-18		0.155366	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDX46	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-15		0.148074	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.124287	[0.089-0.159] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSC	5,330 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-12		0.118283	[0.085-0.151] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP2	5,343 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-14		0.135793	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLK2	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-17		0.158717	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	8E-22		0.181829	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK5;CDK5R1	5,339 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	9E-15		0.135669	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL1	5,354 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	9E-24		0.186891	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA4	5,356 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-17		0.15965	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4orf32	5,352 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.128636	[0.093-0.165] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C3orf18	5,343 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	7E-12		0.123891	[0.089-0.159] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-20		0.174612	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L1	5,350 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-19		0.164421	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAMBI	5,343 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-15		0.141071	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BACH1	5,346 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-12		0.128272	[0.092-0.165] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	6E-18		0.165082	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AURKB	5,338 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	3E-12		0.117004	[0.084-0.15] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT3	5,346 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	2E-16		0.143701	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	4E-16		0.15296	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE5	5,359 Icelandic ancestry individuals	NA	1q31.3		rs528298-A	0.3954	1E-19		0.174412	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196660994	196660995	rs528298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs528298-T	0.614	9E-13	(DCN1-like protein 5, DCUN1D5.8760.10.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196660994	196660995	rs528298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs528298-T	0.614	6E-50	(Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, MAN1B1.7071.23.4)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196660994	196660995	rs528298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs528298-T	0.614	4E-401	(Anaphase-promoting complex subunit 7, ANAPC7.11690.47.3)	0.88	[0.84-0.92] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196660994	196660995	rs528298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs528298-T	0.614	4E-268	(Histone-lysine N-methyltransferase 2D, MLL2.13623.4.3)	0.76	[0.72-0.8] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196661730	196661730	rs140142103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs140142103-TTC	0.616	8E-13	(Calcium/calmodulin-dependent protein kinase type 1D, CAMK1D.3418.12.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196661730	196661730	rs140142103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs140142103-TTC	0.616	3E-56	(Replication initiator 1, REPIN1.13554.78.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196661730	196661730	rs140142103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs140142103-TTC	0.616	2E-14	(Cytochrome c oxidase subunit 4 isoform 2, mitochondrial, COX4I2.7850.1.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196661730	196661730	rs140142103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs140142103-TTC	0.616	1E-14	(Leucine-rich repeat-containing protein 74A, LRRC74A.8389.8.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196661730	196661730	rs140142103	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs140142103-TTC	0.616	1E-13	(Regulator of G-protein signaling 19, RGS19.12713.365.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196663853	196663854	rs12032372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1q31.3		rs12032372-T	0.790853	2E-9		0.0302589	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
2085	chr1	196664504	196664505	rs488380	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	1q31.3		rs488380-T	0.6228367	2E-84		0.6		Affymetrix [15377238] (imputed)	N
2085	chr1	196664650	196664651	rs10922098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERO1A	5,349 Icelandic ancestry individuals	NA	1q31.3		rs10922098-C	0.399	8E-12		0.129738	[0.093-0.167] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196667012	196667013	rs36137052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUN5	5,365 Icelandic ancestry individuals	NA	1q31.3		rs36137052-T	0.3975	1E-12		0.138343	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196667012	196667013	rs36137052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLL3	5,352 Icelandic ancestry individuals	NA	1q31.3		rs36137052-T	0.3975	4E-18		0.160012	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196667251	196667252	rs7539005	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs7539005-T	0.61	8E-206	(Glycosyltransferase 8 domain-containing protein 1, GLT8D1.8955.60.3)	0.69	[0.65-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196667251	196667252	rs7539005	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs7539005-T	0.61	5E-13	(Kallikrein-6, KLK6.3450.4.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196667251	196667252	rs7539005	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs7539005-T	0.61	2E-47	(t-SNARE domain-containing protein 1, TSNARE1.7069.9.4)	0.36	[0.32-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196667427	196667428	rs529899	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1B	5,356 Icelandic ancestry individuals	NA	1q31.3		rs529899-A	0.3975	5E-16		0.154728	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	9E-20	(Glycerol-3-phosphate dehydrogenase 1-like protein, GPD1L.12420.10.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	9E-14	(Regulator of G-protein signaling 8, RGS8.11666.72.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	8E-21	(Zinc finger protein 276, ZNF276.14692.3.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	8E-12	(rRNA methyltransferase 3, mitochondrial, RNMTL1.9584.105.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	7E-14	(Tyrosine-protein phosphatase non-receptor type 1, PTPN1.3005.5.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	7E-12	(Oncostatin-M, OSM.2693.20.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	6E-15	(Augurin, C2orf40.6362.6.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	6E-14	(Complement C1q and tumor necrosis factor-related protein 9A, C1QTNF9.6019.12.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	5E-18	(Protocadherin beta-4, PCDHB4.10522.167.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	4E-21	(Apolipoprotein D, APOD.4712.28.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	4E-13	(Baculoviral IAP repeat-containing protein 5, BIRC5.3472.40.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	3E-15	(Insulin growth factor-like family member 3, IGFL3.6961.14.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	2E-17	(SLAM family member 7, SLAMF7.7882.31.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	2E-16	(Kallikrein-14, KLK14.3681.87.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	2E-14	(Mast cell-expressed membrane protein 1, MCEMP1.6283.60.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	2E-13	(Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha, PIK3C2A.14028.22.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	1E-15	(Secreted frizzled-related protein 3, FRZB.2841.13.2)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	1E-13	(Vitronectin, VTN.8280.238.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196668360	196668361	rs34813609	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs34813609-G	0.612	1E-12	(Secreted frizzled-related protein 2, SFRP2.7751.121.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196670756	196670757	rs4658046	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF18	5,362 Icelandic ancestry individuals	NA	1q31.3		rs4658046-C	0.3992	3E-18		0.170328	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196670756	196670757	rs4658046	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KMT2D	5,333 Icelandic ancestry individuals	NA	1q31.3		rs4658046-C	0.3992	1E-33		0.209852	[0.18-0.24] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196670756	196670757	rs4658046	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	1q31.3	CFH	rs4658046-C	0.39	3E-114		1.38	[1.35-1.41]	Affymetrix, Illumina [11702853] (imputed)	N
2085	chr1	196670838	196670839	rs10754199	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs10754199-G	0.611	1E-11	(CD63 antigen, CD63.9190.7.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196671216	196671217	rs28664709	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs28664709-A	0.611	4E-17	(Spectrin alpha chain, non-erythrocytic 1, SPTAN1.5031.10.1)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196671666	196671670	rs201263987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs201263987-A	0.613	9E-12	(Receptor-type tyrosine-protein kinase FLT3, FLT3.3437.80.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196671666	196671670	rs201263987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs201263987-A	0.613	7E-12	(Interleukin-34, IL34.4556.10.2)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196671666	196671670	rs201263987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs201263987-A	0.613	2E-12	(Platelet endothelial cell adhesion molecule, PECAM1.2695.25.1)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196671980	196671981	rs368465	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PMVK	5,361 Icelandic ancestry individuals	NA	1q31.3		rs368465-T	0.3991	5E-13		0.135979	[0.099-0.173] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196671980	196671981	rs368465	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs368465-C	0.613	1E-12	(B-cell receptor CD22, CD22.2891.1.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196672384	196672385	rs203688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q31.3	NR	rs203688-A	NR	1E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2085	chr1	196672453	196672454	rs12038333	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs12038333-A	0.609	6E-16	(Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, DHX38.13645.14.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196672453	196672454	rs12038333	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs12038333-A	0.609	6E-14	(Glucokinase, GCK.12960.9.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196672453	196672454	rs12038333	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs12038333-A	0.609	6E-12	(Junctional adhesion molecule B, JAM2.2997.8.1)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196673992	196673993	rs1831282	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs1831282-C	0.572	2E-21	(Basic leucine zipper transcriptional factor ATF-like 3, BATF3.8858.21.3)	0.24	[0.2-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196673992	196673993	rs1831282	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	1q31.3	CFHR4, CFHR5, KCNT2, CFH	rs1831282-?	0.53	9E-24		2.63	[2.17-3.13]	Affymetrix [2543887] (imputed)	N
2085	chr1	196673992	196673993	rs1831282	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	1q31.3	CFHR4, CFHR5, KCNT2, CFH	rs1831282-?	0.55	1E-31		2.38	[2.08-2.78]	Affymetrix [2543887] (imputed)	N
2085	chr1	196674713	196674714	rs2019727	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs2019727-A	NR	5E-41		17.771	[15.64-19.91] unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196674981	196674982	rs1048663	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	NR	rs1048663-?	NR	5E-25	(EA, Complement factor H)			Affymetrix [509946]	N
2085	chr1	196675860	196675861	rs6695321	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CFH plasma levels	400 French ancestry individuals	NA	1q31.3		rs6695321-A	NR	2E-9		0.091	[0.06-0.122] ug/mL decrease	Illumina [5201092] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA5	5,366 Icelandic ancestry individuals	NA	1q31.3		rs6695321-G	0.3989	9E-15		0.148843	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,355 Icelandic ancestry individuals	NA	1q31.3		rs6695321-G	0.3989	4E-55		0.283921	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1S	5,362 Icelandic ancestry individuals	NA	1q31.3		rs6695321-G	0.3989	4E-101		0.391417	[0.36-0.43] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q31.3		rs6695321-G	NR	4E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 5 levels	416 European ancestry individuals	NA	1q31.3	CFH	rs6695321-G	0.337	4E-8		0.398	[0.26-0.54] unit decrease	Illumina [9351109] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q31.3	CFH	rs6695321-A	0.619719	3E-11		0.00259907	[0.0018-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q31.3	NR	rs6695321-G	NR	4E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	32741009	Guenther F	2020-08-02	Genet Epidemiol	Chances and challenges of machine learning-based disease classification in genetic association studies illustrated on age-related macular degeneration.	Age-related macular degeneration	3,544 European ancestry cases, 44,521 European ancestry controls	NA	1q31.3	CFH	rs6695321-A	0.619	6E-7		0.12861277	[0.078-0.179] unit increase	Affymetrix [11567158] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q31.3	NR	rs6695321-?	NR	1E-18	(C1s)			Illumina [~ 4000000] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs6695321-G	0.378	3E-27	(Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha, PPP2R3A.13665.35.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
2085	chr1	196675860	196675861	rs6695321	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs6695321-G	0.3713568	9E-40	(EA, Complement C1s subcomponent)	0.5293	[0.45-0.6] unit decrease	Affymetrix [509946]	N
2085	chr1	196675860	196675861	rs6695321	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs6695321-G	0.3713568	3E-20	(EA, Complement factor H-related protein 5)	0.4162	[0.33-0.5] unit decrease	Affymetrix [509946]	N
2085	chr1	196676934	196676935	rs10733086	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	1q31.3	CFH	rs10733086-A	0.51	3E-40		2.04		Illumina [8974355] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFP	5,352 Icelandic ancestry individuals	NA	1q31.3		rs10737680-C	0.3886	4E-63		0.302927	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q31.3		rs10737680-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	28703135	Ruamviboonsuk P	2017-07-13	J Hum Genet	Genome-wide association study of neovascular age-related macular degeneration in the Thai population.	Neovascular age-related macular degeneration	377 Thai ancestry cases, 1,074 Thai ancestry controls	222 Thai ancestry cases, 623 Thai ancestry controls	1q31.3	CFH	rs10737680-C	0.45	2E-6		1.53	[1.29-1.82]	Illumina [958497]	N
2085	chr1	196679454	196679455	rs10737680	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs10737680-C	0.4170854	1E-36	(Complement factor H)	0.4965	[0.42-0.57] unit increase	Affymetrix [509946]	N
2085	chr1	196679454	196679455	rs10737680	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10737680-A	0.6	6E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	1q31.3	CFH	rs10737680-?	NR	8E-38		1.69	[NR]	Illumina [4471719] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	1q31.3	CFH	rs10737680-A	0.64	1E-434		2.43	[2.39-2.47]	Affymetrix, Illumina [2442884] (imputed)	N
2085	chr1	196679454	196679455	rs10737680	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	1q31.3	CFH	rs10737680-A	0.566	2E-76		3.11	[2.76-3.51]	Illumina [~ 2500000] (imputed)	N
2085	chr1	196679681	196679682	rs35617250	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	1q31.3		rs35617250-T	0.18	2E-16		0.1079	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2085	chr1	196681000	196681001	rs12134598	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	1q31.3		rs12134598-G	NR	5E-6		1.5319	[0.89-2.18] unit increase	Illumina [NR] (imputed)	N
2085	chr1	196682345	196682346	rs7535263	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	1q31.3	CFH	rs7535263-?	NR	6E-6		0.68	0.51-0.84	Illumina [7605010] (imputed)	N
2085	chr1	196682345	196682346	rs7535263	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs7535263-A	0.4	6E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196682946	196682947	rs2274700	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs2274700-A	0.399	2E-51	(Complement factor H, CFH.4159.130.1)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196682946	196682947	rs2274700	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	1q31.3	CFH	rs2274700-?	NR	2E-7		1.25	[1.15-1.36]	Illumina [8680745] (imputed)	N
2085	chr1	196682946	196682947	rs2274700	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	1q31.3		rs2274700-A	0.3862	4E-12		0.034	unit decrease	Illumina [28300000] (imputed)	N
2085	chr1	196682946	196682947	rs2274700	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs2274700-A	0.4	6E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196684312	196684313	rs6677089	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs6677089-A	0.6	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196684391	196684392	rs6688272	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs6688272-T	0.4	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196686651	196686652	rs3753395	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	1q31.3	CFH	rs3753395-?	NR	9E-7		0.81	0.72-0.89	Illumina [7605010] (imputed)	N
2085	chr1	196686651	196686652	rs3753395	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs3753395-A	0.6	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196686917	196686918	rs6677604	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q31.3	CFH	rs6677604-?	NR	6E-6		1.12	[1.07-1.17]	Illumina [at least 5000000] (imputed)	N
2085	chr1	196686917	196686918	rs6677604	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	NR	rs6677604-?	NR	2E-13	(EA, Complement factor H)			Affymetrix [509946]	N
2085	chr1	196686917	196686918	rs6677604	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1q31.3	CFHR3, CFHR1	rs6677604-G	0.8	5E-14		1.35	[NR]	Illumina [> 1000000] (imputed)	N
2085	chr1	196686917	196686918	rs6677604	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1q31.3	CFHR3	rs6677604-G	0.93	7E-7	(East Asian)	1.57	[NR]	Illumina [> 1000000] (imputed)	N
2085	chr1	196686917	196686918	rs6677604	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	1q31.3	CFHR3	rs6677604-G	0.8	2E-9	(EA)	1.3	[NR]	Illumina [> 1000000] (imputed)	N
2085	chr1	196686917	196686918	rs6677604	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	1q31.3	CFHR1, CFHR4, CHFR2, CFHR3, CFHR5, CFH	rs6677604-?	0.77 (EA)	3E-10		1.47	[NR]	Illumina [498322]	N
2085	chr1	196687328	196687329	rs10465586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10465586-A	0.602	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196687729	196687730	rs10922104	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10922104-A	0.6	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196690249	196690250	rs10922105	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10922105-A	0.6	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196691463	196691464	rs10922106	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10922106-A	0.6	9E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196692939	196692940	rs35908703	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs35908703-C	0.05740181	9E-14	(EA, Complement factor H-related protein 5)	0.712	[0.53-0.9] unit decrease	Affymetrix [509946]	N
2085	chr1	196692939	196692940	rs35908703	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs35908703-C	0.05740181	6E-12	(EA, Complement factor H)	0.6122	[0.44-0.78] unit decrease	Affymetrix [509946]	N
2085	chr1	196695160	196695161	rs3766405	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs3766405-T	0.4	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196695741	196695742	rs3753396	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C3 levels	3,210 European ancestry individuals, 589 African ancestry individuals, 150 East Asian ancestry individuals	NA	1q31.3	CFH	rs3753396-A	0.17	2E-9	(EA)	0.19	[0.13-0.25] unit increase	NR [NR] (imputed)	N
2085	chr1	196695741	196695742	rs3753396	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C3 levels	3,210 European ancestry individuals, 589 African ancestry individuals, 150 East Asian ancestry individuals	NA	1q31.3	CFH	rs3753396-A	0.16	2E-11		0.2	[0.14-0.25] unit increase	NR [NR] (imputed)	N
2085	chr1	196695741	196695742	rs3753396	29398083	Lores-Motta L	2018-02-01	Ophthalmology	Genome-Wide Association Study Reveals Variants in CFH and CFHR4 Associated with Systemic Complement Activation: Implications in Age-Related Macular Degeneration.	Serum C3d:C3 ratio (systemic complement activation)	up to 1,548 European ancestry individuals	up to 697 European ancestry individuals	1q31.3	CFH	rs3753396-G	0.168	4E-21		0.141	[0.11-0.17] unit increase	Illumina [9972920] (imputed)	N
2085	chr1	196696874	196696875	rs419137	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH	rs419137-G	0.1242455	4E-36	(EA, Hemopexin)	0.8179	[0.7-0.94] unit increase	Affymetrix [509946]	N
2085	chr1	196696932	196696933	rs1410996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs1410996-A	0.399	2E-17	(Properdin, CFP.2960.66.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196696932	196696933	rs1410996	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs1410996-A	0.49	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196696932	196696933	rs1410996	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1q31.3	CFHR4	rs1410996-G	0.585	1E-9	(FXIIIA)	0.203	[0.14-0.27] unit increase	Illumina [NR] (imputed)	N
2085	chr1	196696932	196696933	rs1410996	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	1q31.3	CFH	rs1410996-?	NR	2E-111				Affymetrix [632932]	N
2085	chr1	196698462	196698463	rs6689009	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q31.3	CFH	rs6689009-A	0.81	4E-10		6.27	z-score increase	Affymetrix [4314223] (imputed)	N
2085	chr1	196698650	196698651	rs10922107	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFH	5,346 Icelandic ancestry individuals	NA	1q31.3		rs10922107-T	0.1764	2E-91		0.462904	[0.42-0.51] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196699043	196699044	rs10801558	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10801558-T	0.601	9E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196700913	196700914	rs7514261	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs7514261-A	0.399	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196701050	196701051	rs380390	15761122	Klein RJ	2005-03-10	Science	Complement factor H polymorphism in age-related macular degeneration.	Age-related macular degeneration	96 European ancestry cases, 50 European ancestry controls	NA	1q31.3	CFH	rs380390-C	0.70 (HapMap CEU)	4E-8		4.6	[2.0-11]	Affymetrix [103611]	N
2085	chr1	196701283	196701284	rs7540032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs7540032-T	0.49	8E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196701472	196701473	rs10922108	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 4A levels	416 European ancestry individuals	NA	1q31.3	CFH	rs10922108-T	0.335	3E-16		0.449	[0.35-0.55] unit decrease	Illumina [9351109] (imputed)	N
2085	chr1	196701472	196701473	rs10922108	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10922108-A	0.602	9E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196702809	196702810	rs1329428	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		1q31.3	CFH	rs1329428-?	NR	3E-11		1.57	[1.38-1.80]	Illumina [11526719] (imputed)	N
2085	chr1	196702809	196702810	rs1329428	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	1q31.3	NR	rs1329428-?	NR	5E-16	(Factor H)	0.08	[0.062-0.098] unit increase	Illumina [4020654] (imputed)	N
2085	chr1	196702809	196702810	rs1329428	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs1329428-T	0.601	8E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196702809	196702810	rs1329428	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	1q31.3	CFH	rs1329428-?	NR	3E-64		2.78	[NR]	Affymetrix [> 361556] (imputed)	N
2085	chr1	196704203	196704204	rs10801559	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10801559-A	0.399	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196704558	196704559	rs1329427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs1329427-T	0.397	7E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196704631	196704632	rs10922109	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs10922109-?	NR	1E-617	(EA)	2.631579		Illumina [12023830] (imputed)	N
2085	chr1	196704631	196704632	rs10922109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q31.3	CFH	rs10922109-A	0.399	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
2085	chr1	196704996	196704997	rs70620	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs70620-A	NR	2E-25		2.0175	[1.68-2.35] unit increase	Illumina [NR] (imputed)	N
2085	chr1	196704996	196704997	rs70620	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H levels	416 European ancestry individuals	NA	1q31.3	CFH	rs70620-A	0.7	9E-17		0.754	[0.58-0.92] unit decrease	Illumina [9351109] (imputed)	N
2085	chr1	196704996	196704997	rs70620	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x Hispanic interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	1q31.3	NR	rs70620-?	NR	2E-7				NR [6212909] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	9E-30	(NDUFS4, 10584_7_3)	0.35715514	[0.3-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	6E-9	(CFHR1, 5982_50_3)	0.18722047	[0.12-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	6E-10	(HPX, 2768_56_2)	0.19952074	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	4E-21	(TST, 12663_1_3)	0.2926674	[0.23-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	4E-12	(CFHR5, 7885_17_3)	0.22160085	[0.16-0.28] unit increase	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	3E-24	(C1S, 3590_8_3)	0.32766742	[0.26-0.39] unit increase	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	1E-9	(CFHR4, 6471_53_3)	0.19515273	[0.13-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	1E-54	(CFH, 4159_130_1)	0.49920067	[0.44-0.56] unit increase	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	1E-22	(LRRC19, 7014_27_3)	0.31653318	[0.25-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	1E-22	(CFHR5, 3666_17_4)	0.31453696	[0.25-0.38] unit increase	Illumina [> 1000000] (imputed)	N
2085	chr1	196705008	196705009	rs70621	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs70621-G	0.8228125	1E-16	(PPP2R3A, 13665_35_3)	0.26644456	[0.2-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2085	chr1	196706641	196706642	rs35292876	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs35292876-?	NR	8E-37	(EA)	2.42		Illumina [12023830] (imputed)	N
2085	chr1	196709773	196709774	rs1065489	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	1q31.3		rs1065489-G	0.783	8E-8		0.02	[0.0-0.18]	Illumina [243345]	N
2085	chr1	196710915	196710916	rs16840522	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALK1	5,361 Icelandic ancestry individuals	NA	1q31.3		rs16840522-C	0.1676	6E-41		0.329206	[0.28-0.38] unit decrease	Illumina [7506463] (imputed)	N
2085	chr1	196714669	196714670	rs10801561	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs10801561-A	NR	5E-25		1.4271	[1.19-1.67] unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196714669	196714670	rs10801561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q31.3	NR	rs10801561-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
2085	chr1	196716374	196716375	rs121913059	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs121913059-?	NR	9E-24	(EA)	20.28		Illumina [12023830] (imputed)	N
2085	chr1	196716997	196716998	rs114645367	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 2 levels	416 European ancestry individuals	NA	1q31.3	CFH	rs114645367-A	0.012	1E-10		1.507	[1.06-1.95] unit decrease	Illumina [9340382] (imputed)	N
2085	chr1	196719715	196719716	rs529541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q31.3		rs529541-G	NR	8E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2085	chr1	196719715	196719716	rs529541	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 3 levels	416 European ancestry individuals	NA	1q31.3	CFH	rs529541-G	0.178	2E-47		1.161	[1.02-1.30] unit increase	Illumina [9351109] (imputed)	N
2085	chr1	196719715	196719716	rs529541	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFH	rs529541-G	0.179	7E-23	(Rho guanine nucleotide exchange factor 10, ARHGEF10.9061.3.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196719816	196719817	rs150313019	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs150313019-G	NR	1E-15		1.6761	[1.29-2.06] unit decrease	Illumina [NR] (imputed)	N
2085	chr1	196721930	196721931	rs371960809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q31.3		rs371960809-T	NR	3E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2085	chr1	196729034	196729035	rs1092801	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs1092801-C	0.169	9E-27	(Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, MAN1B1.7071.23.4)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
2085	chr1	196729034	196729035	rs1092801	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs1092801-C	0.169	2E-76	(Anaphase-promoting complex subunit 7, ANAPC7.11690.47.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
2086	chr1	196760416	196760417	rs426736	20694013	Davila S	2010-08-08	Nat Genet	Genome-wide association study identifies variants in the CFH region associated with host susceptibility to meningococcal disease.	Meningococcal disease	475 European ancestry cases, 4,703 European ancestry controls	929 European ancestry cases, 1,351 European ancestry controls	1q31.3	CFHR3, CFH	rs426736-?	0.84	5E-13		1.59	[1.41-1.82]	Illumina [518920]	N
2086	chr1	196770530	196770531	rs142413464	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs142413464-G	0.02613	3E-9	(LTF)	0.2401	NR unit increase	Illumina [1671387] (imputed)	N
2086	chr1	196774717	196774718	rs365299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs365299-T	0.444	9E-149	(Anaphase-promoting complex subunit 7, ANAPC7.11690.47.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
2086	chr1	196774717	196774718	rs365299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs365299-T	0.444	1E-155	(NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial, NDUFS4.10584.7.3)	0.68	[0.62-0.74] unit increase	Affymetrix [10572788] (imputed)	N
2086	chr1	196805544	196805545	rs200749956	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs200749956-T	0.137	1E-45	(Complement factor H, CFH.4159.130.1)	0.54	[0.46-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196813691	196813692	rs56994749	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 4A levels	416 European ancestry individuals	NA	1q31.3	CFHR1, CFHR4	rs56994749-A	0.329	6E-26		0.77	[0.64-0.90] unit increase	Illumina [9351109] (imputed)	N
2086	chr1	196813825	196813826	rs77319612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q31.3		rs77319612-C	NR	1E-8		0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2086	chr1	196813825	196813826	rs77319612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	1q31.3		rs77319612-C	0.308356	1E-8		0.0262732	[0.017-0.035] unit increase	Illumina [13474352] (imputed)	N
2086	chr1	196814952	196814953	rs1694456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs1694456-C	0.639	1E-22	(Complement factor H-related protein 5, CFHR5.7885.17.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
2086	chr1	196815449	196815450	rs61818925	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH, CFHR3, CFHR1	rs61818925-?	NR	6E-165	(EA)	1.6666665		Illumina [12023830] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	9E-18	(ANAPC7, 11690_47_3)	0.22374693	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	8E-20	(CFHR5, 7885_17_3)	0.23727597	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	7E-9	(MAN1B1, 7071_23_4)	0.1523719	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	7E-35	(C1S, 3590_8_3)	0.3233932	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	7E-10	(EFCAB14, 9514_46_3)	0.16427016	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	5E-9	(CFP, 2960_66_2)	0.15828067	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	5E-26	(CFHR5, 3666_17_4)	0.2766779	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	4E-9	(CFB, 4129_72_1)	0.15597628	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	4E-85	(HPX, 2768_56_2)	0.5009246	[0.45-0.55] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	4E-69	(NDUFS4, 10584_7_3)	0.44638586	[0.4-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	4E-16	(CFHR1, 5982_50_3)	0.21409301	[0.16-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	3E-81	(CFHR4, 6471_53_3)	0.48860425	[0.44-0.54] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	3E-58	(TST, 12663_1_3)	0.40292585	[0.35-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	3E-17	(F13B, 5658_64_3)	0.21851753	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	2E-47	(LRRC19, 7014_27_3)	0.37869808	[0.33-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	2E-12	(CEACAM7, 7184_13_3)	0.18166651	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	2E-10	(GSKIP, 12849_25_3)	0.16389716	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196815707	196815708	rs71524421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs71524421-G	0.63859375	1E-25	(PPP2R3A, 13665_35_3)	0.2747569	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196815710	196815711	rs71631868	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR2	rs71631868-C	0.206	3E-17	(DNA repair protein XRCC4, XRCC4.9886.28.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196815862	196815863	rs76258418	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs76258418-T	0.156	2E-67	(NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial, NDUFS4.10584.7.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
2086	chr1	196815862	196815863	rs76258418	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs76258418-T	0.156	2E-238	(Leucine-rich repeat-containing protein 19, LRRC19.7014.27.3)	1.04	[0.98-1.1] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196817997	196817998	rs6679884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPX	5,368 Icelandic ancestry individuals	NA	1q31.3		rs6679884-G	0.2329	4E-228		0.672807	[0.63-0.71] unit decrease	Illumina [7506463] (imputed)	N
2086	chr1	196818450	196818451	rs10801571	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs10801571-T	NR	3E-27		1.4689	[1.23-1.7] unit increase	Illumina [NR] (imputed)	N
2086	chr1	196818517	196818518	rs114036234	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	1q31.3		rs114036234-A	NR	5E-6		3.0784	[1.79-4.37] unit decrease	Illumina [NR] (imputed)	N
2086	chr1	196819348	196819349	rs201215552	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	NR	rs201215552-T	0.396	5E-132	(Histone-lysine N-methyltransferase 2D, MLL2.13623.4.3)	0.62	[0.56-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196821379	196821380	rs67908756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRLR	5,356 Icelandic ancestry individuals	NA	1q31.3		rs67908756-G	0.1696	1E-60		0.385687	[0.34-0.43] unit decrease	Illumina [7506463] (imputed)	N
2086	chr1	196821379	196821380	rs67908756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1S	5,362 Icelandic ancestry individuals	NA	1q31.3		rs67908756-G	0.1696	3E-60		0.394135	[0.35-0.44] unit increase	Illumina [7506463] (imputed)	N
2086	chr1	196821379	196821380	rs67908756	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR4	rs67908756-G	0.194	4E-14	(Calnexin, CANX.8834.58.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196821816	196821817	rs12142766	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC19	5,362 Icelandic ancestry individuals	NA	1q31.3		rs12142766-G	0.3546	9E-110		0.419362	[0.38-0.46] unit increase	Illumina [7506463] (imputed)	N
2086	chr1	196822315	196822316	rs111884070	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs111884070-A	NR	5E-24		2.058	[1.7-2.42] unit increase	Illumina [NR] (imputed)	N
2086	chr1	196822367	196822368	rs60642321	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CFHR1 plasma levels	400 French ancestry individuals	NA	1q31.3		rs60642321-A	NR	3E-44		0.64	[0.58-0.7] ug/mL decrease	Illumina [5201092] (imputed)	N
2086	chr1	196823612	196823613	rs7542235	32277175	Han X	2020-04-10	J Hum Genet	Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.	Age-related macular degeneration (MTAG)	37,342 European ancestry cases, 92,890 European ancestry controls	7,126 European ancestry cases, 174,286 European ancestry controls	1q31.3	CFHR1	rs7542235-A	0.81	6E-414		2.173913	[2.08-2.27]	NR [NR] (imputed)	N
2086	chr1	196825286	196825287	rs7519758	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR4	rs7519758-T	0.194	1E-307	(Leucine-rich repeat-containing protein 19, LRRC19.7014.27.3)	0.97	[0.91-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
2086	chr1	196835105	196835106	rs12047098	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs12047098-C	NR	1E-17		1.7459	[1.38-2.12] unit decrease	Illumina [NR] (imputed)	N
2086	chr1	196838059	196838060	rs6657442	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q31.3	NR	rs6657442-?	NR	1E-23	(Hemopexin)			Illumina [~ 4000000] (imputed)	N
2086	chr1	196840271	196840272	rs7517126	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	NR	rs7517126-?	NR	8E-8	(EA, Complement factor H)			Affymetrix [509946]	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	7E-381	(CFHR1, 5982_50_3)	1.2953744	[1.24-1.35] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	6E-11	(ANAPC7, 11690_47_3)	0.22909114	[0.16-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	5E-25	(F13B, 5658_64_3)	0.3556837	[0.29-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	5E-16	(CFH, 4159_130_1)	0.28893632	[0.22-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	3E-26	(TST, 12663_1_3)	0.3587199	[0.29-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	3E-191	(LRRC19, 7014_27_3)	0.9814947	[0.92-1.04] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	3E-19	(GALK1, 11448_34_3)	0.31090054	[0.24-0.38] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	3E-11	(CFP, 2960_66_2)	0.24119829	[0.17-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	2E-28	(PRLR, 9224_20_3)	0.4004538	[0.33-0.47] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	2E-18	(MAN1B1, 7071_23_4)	0.30715933	[0.24-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	1E-34	(NDUFS4, 10584_7_3)	0.42210874	[0.36-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196841376	196841377	rs57809726	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs57809726-A	0.86234375	1E-32	(C1S, 3590_8_3)	0.4188409	[0.35-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196844592	196844593	rs6428370	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	1q31.3	intergenic	rs6428370-G	0.32	7E-6		1.43	[1.20-1.60]	Affymetrix [307944]	N
2086	chr1	196848493	196848494	rs138320780	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,358 Icelandic ancestry individuals	NA	1q31.3		rs138320780-C	0.01317	1E-26		0.870662	[0.71-1.03] unit decrease	Illumina [7506463] (imputed)	N
2086	chr1	196848493	196848494	rs138320780	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,355 Icelandic ancestry individuals	NA	1q31.3		rs138320780-C	0.01317	2E-48		1.13843	[0.99-1.29] unit decrease	Illumina [7506463] (imputed)	N
2086	chr1	196855688	196855689	rs7413610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR4	5,368 Icelandic ancestry individuals	NA	1q31.3		rs7413610-A	0.2436	2E-246		0.677596	[0.64-0.72] unit decrease	Illumina [7506463] (imputed)	N
2086	chr1	196860734	196860735	rs7367184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q31.3		rs7367184-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2086	chr1	196865416	196865417	rs12734260	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFH, CFHR2, CFHR4, RP4-608O15.4	rs12734260-T	0.1134538	6E-16	(EA, Complement C1s subcomponent)	0.5063	[0.39-0.63] unit increase	Affymetrix [509946]	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	9E-28	(CFHR4, 6471_53_3)	0.26612744	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	9E-14	(CFHR5, 7885_17_3)	0.18154919	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	8E-25	(CFP, 2960_66_2)	0.25857946	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	6E-27	(CFHR5, 3666_17_4)	0.2633179	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	5E-9	(IL10RA, 10344_334_3)	0.142139	[0.094-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	5E-31	(MAN1B1, 7071_23_4)	0.28184763	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	5E-25	(GSKIP, 12849_25_3)	0.24572213	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	4E-9	(CEACAM7, 7184_13_3)	0.1423952	[0.095-0.19] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	4E-27	(HPX, 2768_56_2)	0.26360914	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	4E-14	(MLL2, 13623_4_3)	0.18477267	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	3E-9	(C1S, 3590_8_3)	0.14672765	[0.098-0.195] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	3E-27	(PPP2R3A, 13665_35_3)	0.2654726	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	2E-9	(TNFRSF18, 5526_53_3)	0.14992973	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	2E-45	(ANAPC7, 11690_47_3)	0.34061095	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	2E-13	(EFCAB14, 9514_46_3)	0.1823065	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	2E-10	(DLL3, 9974_8_3)	0.15911204	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	1E-73	(CFHR1, 5982_50_3)	0.43669218	[0.39-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	1E-200	(NDUFS4, 10584_7_3)	0.6852225	[0.64-0.73] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs6685931-T	0.5609375	1E-147	(TST, 12663_1_3)	0.5865368	[0.54-0.63] unit increase	Illumina [> 1000000] (imputed)	N
2086	chr1	196867232	196867233	rs6685931	29398083	Lores-Motta L	2018-02-01	Ophthalmology	Genome-Wide Association Study Reveals Variants in CFH and CFHR4 Associated with Systemic Complement Activation: Implications in Age-Related Macular Degeneration.	Serum C3d:C3 ratio (systemic complement activation)	up to 1,548 European ancestry individuals	up to 697 European ancestry individuals	1q31.3	CFHR4	rs6685931-C	0.439	6E-8		0.054	[0.034-0.074] unit increase	Illumina [9972920] (imputed)	N
2086	chr1	196869099	196869100	rs78239784	29288229	McCormack M	2017-12-29	Neurology	Genetic variation in CFH predicts phenytoin-induced maculopapular exanthema in European-descent patients.	Phenytoin-induced maculopapular exanthema	52 European ancestry cases, 472 European ancestry tolerant controls, 22 Han Chinese ancestry cases, 58 Han Chinese ancestry tolerant controls	13 European ancestry cases, 88 European ancestry tolerant controls	1q31.3	CFHR4	rs78239784-G	0.01	5E-11	(EA)	7.0	[3.2-16]	Illumina [at least 3693290] (imputed)	N
2087	chr1	196871716	196871717	rs145744152	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1q31.3	CFHR2	rs145744152-C		9E-6	(EA)	2.75	[1.08-6.97]	Affymetrix, Illumina [NR] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	8E-20	(CFP, 2960_66_2)	0.26239556	[0.21-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	6E-42	(NDUFS4, 10584_7_3)	0.37190515	[0.32-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	6E-22	(C1S, 3590_8_3)	0.27128398	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	5E-18	(CFB, 4129_72_1)	0.24385597	[0.19-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	4E-36	(F13B, 5658_64_3)	0.34375438	[0.29-0.4] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	4E-13	(CFHR5, 7885_17_3)	0.20182025	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	3E-9	(PDGFRA, 10366_11_3)	0.1666163	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	3E-28	(LRRC19, 7014_27_3)	0.30991852	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	3E-13	(ANAPC7, 11690_47_3)	0.20294435	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	2E-9	(MAN1B1, 7071_23_4)	0.16899484	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	2E-40	(TST, 12663_1_3)	0.35858646	[0.31-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	2E-140	(HPX, 2768_56_2)	0.67696923	[0.63-0.73] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	2E-131	(CFHR4, 6471_53_3)	0.65522474	[0.61-0.71] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	1E-19	(CEACAM7, 7184_13_3)	0.24989384	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	1E-12	(CFHR1, 5982_50_3)	0.19991507	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs4915559-T	0.75265625	1E-11	(PPP2R3A, 13665_35_3)	0.19148527	[0.14-0.25] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196886769	196886770	rs4915559	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1q31.3	CFHR4	rs4915559-T	0.759	7E-19	(FXIIIA)	0.339	[0.26-0.41] unit increase	Illumina [NR] (imputed)	N
2087	chr1	196887456	196887457	rs10494745	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 4A levels	416 European ancestry individuals	NA	1q31.3	CFHR4	rs10494745-A	0.099	6E-39		1.302	[1.13-1.48] unit decrease	Illumina [9351109] (imputed)	N
2087	chr1	196887456	196887457	rs10494745	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	ZBTB41, CFHR4, CFHR2, ASPM	rs10494745-A	0.1069277	2E-52	(Hemopexin)	1.025	[0.9-1.15] unit decrease	Affymetrix [509946]	N
2087	chr1	196894828	196894829	rs10737683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q31.3		rs10737683-A	NR	2E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2087	chr1	196894828	196894829	rs10737683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q31.3		rs10737683-A	NR	1E-9		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2087	chr1	196902216	196902217	rs2477986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q31.3	NR	rs2477986-T	NR	1E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
2087	chr1	196918740	196918741	rs79351096	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs79351096-A	NR	2E-6		0.41109	[0.25-0.57] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196918740	196918741	rs79351096	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	1q31.3		rs79351096-A	NR	5E-6		3.5396	[2.05-5.03] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196918740	196918741	rs79351096	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 2 levels	416 European ancestry individuals	NA	1q31.3	CFHR2	rs79351096-A	0.012	5E-19		2.268	[1.80-2.74] unit decrease	Illumina [9340382] (imputed)	N
2087	chr1	196920298	196920299	rs3790414	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs3790414-A	NR	3E-32		1.5354	[1.32-1.75] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196920298	196920299	rs3790414	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 2 levels	416 European ancestry individuals	NA	1q31.3	CFHR2	rs3790414-A	0,177	2E-29		0.979	[0.82-1.14] unit decrease	Illumina [9340382] (imputed)	N
2087	chr1	196928187	196928188	rs41310132	34260947	Lores-Motta L	2021-07-13	Am J Hum Genet	Common haplotypes at the CFH locus and low-frequency variants in CFHR2 and CFHR5 associate with systemic FHR concentrations and age-related macular degeneration.	Complement factor H-related protein 2 levels	416 European ancestry individuals	NA	1q31.3	CFHR2	rs41310132-G	0.009	2E-10		1.833	[1.29-2.38] unit decrease	Illumina [9340382] (imputed)	N
2087	chr1	196933244	196933245	rs9427938	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs9427938-T	NR	2E-15		1.8054	[1.39-2.22] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196942620	196942621	rs13376702	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs13376702-T	NR	2E-22		12.966	[10.61-15.32] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196942659	196942660	rs115105970	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	1q31.3	NR	rs115105970-T	NR	2E-6	(Hispanic)	6.84	[4.07-9.61] unit increase	Affymetrix [14000000] (imputed)	N
2087	chr1	196944356	196944357	rs10801582	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs10801582-A	NR	1E-12		1.4827	[1.1-1.87] unit decrease	Illumina [NR] (imputed)	N
2087	chr1	196944356	196944357	rs10801582	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CFHR4, CFHR2, RP4-608O15.4, CFHR5	rs10801582-A	0.2321966	1E-49	(Hemopexin)	0.7365	[0.64-0.83] unit decrease	Affymetrix [509946]	N
2087	chr1	196945788	196945789	rs6694672	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1q31.3	CFHR2, CFHR5	rs6694672-G	0.05	9E-6	(Latino)	2.13	[1.52-2.97]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
2087	chr1	196956560	196956561	rs10801583	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F13B	5,330 Icelandic ancestry individuals	NA	1q31.3		rs10801583-C	0.1372	2E-106		0.452707	[0.41-0.49] unit decrease	Illumina [7506463] (imputed)	N
2087	chr1	196958650	196958651	rs191281603	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	1q31.3	CFH	rs191281603-?	NR	8E-7	(EA, conditioned)	2.44		Illumina [12023830] (imputed)	N
2087	chr1	196967353	196967354	rs35662416	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFRA	5,365 Icelandic ancestry individuals	NA	1q31.3		rs35662416-A	0.02581	1E-256		1.82637	[1.72-1.93] unit increase	Illumina [7506463] (imputed)	N
2087	chr1	196967353	196967354	rs35662416	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,358 Icelandic ancestry individuals	NA	1q31.3		rs35662416-A	0.02581	2E-75		1.09483	[0.98-1.21] unit decrease	Illumina [7506463] (imputed)	N
2087	chr1	196967353	196967354	rs35662416	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR5	rs35662416-A	0.03	4E-121	(Platelet-derived growth factor receptor alpha, PDGFRA.10366.11.3)	1.54	[1.4-1.68] unit increase	Affymetrix [10572788] (imputed)	N
2087	chr1	196967353	196967354	rs35662416	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q31.3	CFHR5	rs35662416-A	0.03	3E-69	(Complement factor H-related protein 5, CFHR5.3666.17.4)	1.2	[1.06-1.34] unit decrease	Affymetrix [10572788] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	32277175	Han X	2020-04-10	J Hum Genet	Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.	Age-related macular degeneration (MTAG)	37,342 European ancestry cases, 92,890 European ancestry controls	7,126 European ancestry cases, 174,286 European ancestry controls	1q31.3	CFHR5	rs12116643-T	0.84	2E-157		1.6666665	[1.61-1.72]	NR [NR] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	9E-67	(HPX, 2768_56_2)	0.58337873	[0.52-0.65] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	9E-16	(TST, 12663_1_3)	0.26783156	[0.2-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	3E-10	(CFHR5, 7885_17_3)	0.21594775	[0.15-0.28] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	2E-9	(CFP, 2960_66_2)	0.21348916	[0.14-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	2E-63	(CFHR4, 6471_53_3)	0.56735235	[0.5-0.63] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	2E-20	(NDUFS4, 10584_7_3)	0.31412986	[0.25-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	1E-9	(C1S, 3590_8_3)	0.21025091	[0.14-0.28] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	1E-60	(F13B, 5658_64_3)	0.5470709	[0.48-0.61] unit increase	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q31.3	NR	rs12116643-T	0.8625	1E-12	(LRRC19, 7014_27_3)	0.24627776	[0.18-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2087	chr1	196973182	196973183	rs12116643	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1q31.3	CFHR4	rs12116643-T	0.84	5E-30	(FXIIIA)	0.515	[0.43-0.6] unit increase	Illumina [NR] (imputed)	N
2087	chr1	196978614	196978615	rs10922153	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q31.3	NR	rs10922153-?	NR	2E-16	(Hemopexin)			Illumina [514227]	N
2088	chr1	197020657	197020658	rs2990510	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	1q31.3	F13B	rs2990510-G	0.305	6E-6				Illumina [840354]	N
2088	chr1	197021188	197021189	rs10801586	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs10801586-T	NR	1E-15		1.3046	[1.01-1.6] unit decrease	Illumina [NR] (imputed)	N
2088	chr1	197027219	197027220	rs1412633	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	1q31.3	NR	rs1412633-?	NR	1E-17	(Complement factor H-related protein 1 (FHR-1))			Illumina [~ 4000000] (imputed)	N
2088	chr1	197031020	197031021	rs6003	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	ASPM, ZBTB41, F13B, CFHR5, RP11-32D17.4, RP11-332L8.1, CRB1	rs6003-C	0.09478435	2E-14	(EA, Complement factor H-related protein 5)	0.5817	[0.44-0.73] unit increase	Affymetrix [509946]	N
2088	chr1	197070775	197070776	rs10922162	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1q31.3	CFHR4	rs10922162-C	0.839	2E-30	(FXIIIA)	0.521	[0.43-0.61] unit increase	Illumina [NR] (imputed)	N
2088	chr1	197093097	197093098	rs6685259	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs6685259-T	NR	2E-11		1.7667	[1.27-2.26] unit increase	Illumina [NR] (imputed)	N
2088	chr1	197113572	197113573	rs6656858	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFHR5	5,355 Icelandic ancestry individuals	NA	1q31.3		rs6656858-C	0.08884	1E-28		0.349853	[0.29-0.41] unit increase	Illumina [7506463] (imputed)	N
2088	chr1	197116763	197116764	rs61819092	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs61819092-T	NR	3E-7		1.2598	[0.79-1.73] unit decrease	Illumina [NR] (imputed)	N
2088	chr1	197126648	197126649	rs4639796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q31.3	NR	rs4639796-A	NR	3E-18		0.0296	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
2088	chr1	197126648	197126649	rs4639796	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q31.3		rs4639796-A	0.1626	4E-12		0.2003989	[0.14-0.26] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
2088	chr1	197126648	197126649	rs4639796	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q31.3		rs4639796-A	0.1625	1E-9		0.12480165	[0.083-0.167] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
2088	chr1	197126648	197126649	rs4639796	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q31.3	NR	rs4639796-G	0.84011	4E-28		0.0124336	[0.01-0.015] unit increase	Affymetrix [16582909] (imputed)	N
2088	chr1	197126648	197126649	rs4639796	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q31.3	NR	rs4639796-G	0.84011	2E-28		0.0139887	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
2089	chr1	197141252	197141253	rs10429910	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,356 Icelandic ancestry individuals	NA	1q31.3		rs10429910-C	0.13	6E-12		0.189361	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
2089	chr1	197141252	197141253	rs10429910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q31.3		rs10429910-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2089	chr1	197141987	197141988	rs4520444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q31.3		rs4520444-T	NR	8E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2089	chr1	197141987	197141988	rs4520444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q31.3	NR	rs4520444-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
2089	chr1	197153766	197153767	rs10922177	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs10922177-C	NR	6E-15		1.267	[0.97-1.57] unit decrease	Illumina [NR] (imputed)	N
2089	chr1	197155020	197155021	rs7410943	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	1q31.3	CFHR4	rs7410943-A	0.531	3E-19	(FXIIIB)	0.301	[0.23-0.37] unit increase	Illumina [NR] (imputed)	N
2089	chr1	197157893	197157894	rs1415212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q31.3		rs1415212-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2089	chr1	197162551	197162552	rs78865786	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs78865786-C	NR	2E-6		0.47867	[0.29-0.67] unit decrease	Illumina [NR] (imputed)	N
2089	chr1	197165013	197165014	rs10754218	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	ZBTB41	rs10754218-G	0.3076536	3E-16	(EA, Hemopexin)	0.4002	[0.31-0.49] unit increase	Affymetrix [509946]	N
2089	chr1	197165711	197165712	rs7516246	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F13B	5,330 Icelandic ancestry individuals	NA	1q31.3		rs7516246-C	0.2735	5E-63		0.274197	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
2089	chr1	197170552	197170554	rs55650346	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs55650346-T	NR	3E-14		15.71	[11.9-19.52] unit increase	Illumina [NR] (imputed)	N
2089	chr1	197221903	197221904	rs6678066	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q31.3		rs6678066-G	NR	2E-11		1.7694	[1.28-2.26] unit increase	Illumina [NR] (imputed)	N
2089	chr1	197225125	197225126	rs12041186	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	1q31.3		rs12041186-C	NR	9E-6		1.1232	[0.64-1.61] unit decrease	Illumina [NR] (imputed)	N
2089	chr1	197244289	197244290	rs10754220	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q31.3	NR	rs10754220-G	NR	1E-7		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
2089	chr1	197244289	197244290	rs10754220	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q31.3	CRB1	rs10754220-A	0.3	8E-9		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
2089	chr1	197257089	197257090	rs1009188	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q31.3	NA	rs1009188-T	0.7137	7E-11		0.0124	[0.0087-0.0161] unit increase	NR [~ 27400000] (imputed)	N
2090	chr1	197265640	197265641	rs1337005	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs1337005-T	NR	3E-11		0.8162	[0.59-1.05] unit decrease	Illumina [NR] (imputed)	N
2090	chr1	197274117	197274118	rs672769	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	1q31.3	CRB1	rs672769-T	0.978	2E-6	(AA)	0.114	[0.067-0.161] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
2090	chr1	197274117	197274118	rs672769	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	1q31.3	CRB1	rs672769-T	0.978	5E-10	(AA)	0.187	[0.13-0.25] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
2090	chr1	197291536	197291537	rs142990389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q31.3		rs142990389-T	NR	3E-11		0.0218	[0.015-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2090	chr1	197293422	197293423	rs114726755	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs114726755-A	NR	3E-6		1.6988	[1.01-2.39] unit decrease	Illumina [NR] (imputed)	N
2090	chr1	197293422	197293423	rs114726755	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q31.3	NR	rs114726755-T	NR	3E-6		1.1627907	[NR]	Illumina [7158791] (imputed)	N
2090	chr1	197297416	197297417	rs12042924	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q31.3	CRB1	rs12042924-T	0.531	6E-11		0.1615	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2090	chr1	197298999	197299000	rs1764625	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs1764625-T	NR	4E-6		0.14868	[0.087-0.21] unit decrease	Illumina [NR] (imputed)	N
2090	chr1	197302004	197302005	rs7534703	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	1q31.3	CFHR2	rs7534703-T	0.0205958	4E-8		5.49	z score decrease	NR [10847151] (imputed)	N
2090	chr1	197302716	197302717	rs2786114	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q31.3		rs2786114-C	NR	1E-13		15.392	[11.56-19.22] unit increase	Illumina [NR] (imputed)	N
2090	chr1	197306098	197306099	rs2786111	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	1q31.3	F13B, ASPM, CRB1, ZBTB41, CFHR5	rs2786111-C	NR	5E-6	(Recessive)	2.26	[1.60-3.19]	Affymetrix, Illumina [1621689] (imputed)	N
2090	chr1	197310776	197310777	rs2786107	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q31.3	CRB1	rs2786107-G	0.2041123	1E-23	(EA, Hemopexin)	0.5313	[0.43-0.63] unit increase	Affymetrix [509946]	N
2090	chr1	197315420	197315420	rs528352139	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs528352139-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
2090	chr1	197317237	197317238	rs10922199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q31.3		rs10922199-A	NR	2E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2090	chr1	197321439	197321440	rs10922200	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	1q31.3	NR	rs10922200-?		8E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
2090	chr1	197325907	197325908	rs2786098	20032318	Sleiman PM	2009-12-23	N Engl J Med	Variants of DENND1B associated with asthma in children.	Asthma	793 European ancestry cases, 1,988 European ancestry controls	917 European ancestry cases, 1,546 European ancestry controls, 1,667 African American cases, 2,045 African American controls	1q31.3	DENND1B, CRB1	rs2786098-?	0.848	9E-11	(EA)	1.43		Illumina [~ 550000]	N
2090	chr1	197325907	197325908	rs2786098	20032318	Sleiman PM	2009-12-23	N Engl J Med	Variants of DENND1B associated with asthma in children.	Asthma	793 European ancestry cases, 1,988 European ancestry controls	917 European ancestry cases, 1,546 European ancestry controls, 1,667 African American cases, 2,045 African American controls	1q31.3	CRB1, DENND1B	rs2786098-?	NR	2E-13			[NR]	Illumina [~ 550000]	N
2090	chr1	197329040	197329041	rs2821116	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	1q31.3	ASPM	rs2821116-?	NR	3E-19	(facial module 13)			Illumina [9478608] (imputed)	N
2090	chr1	197333778	197333779	rs2786116	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip protrusion)	6,169 Latin American individuals	NA	1q31.3		rs2786116-?	NR	9E-11				Illumina [8703729] (imputed)	N
2090	chr1	197333778	197333779	rs2786116	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip protrusion)	6,169 Latin American individuals	NA	1q31.3		rs2786116-?	NR	2E-8				Illumina [8703729] (imputed)	N
2090	chr1	197333778	197333779	rs2786116	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (chin protrusion 2)	6,169 Latin American individuals	NA	1q31.3		rs2786116-?	NR	1E-6				Illumina [8703729] (imputed)	N
2090	chr1	197333778	197333779	rs2786116	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (chin protrusion 1)	6,169 Latin American individuals	NA	1q31.3		rs2786116-?	NR	4E-8				Illumina [8703729] (imputed)	N
2090	chr1	197337667	197337668	rs17618450	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs17618450-?		1E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
2090	chr1	197341900	197341901	rs76169311	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q31.3		rs76169311-A	0.1	2E-35		12.43	z score increase	Affymetrix [9061022] (imputed)	N
2090	chr1	197341900	197341901	rs76169311	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Luteinizing hormone levels in polycystic ovary syndrome	645 European ancestry cases	607 European ancestry cases	1q31.3	intergenic	rs76169311-A	0.1	3E-7		3.75	[2.28-5.22] mIU/mL increase	Illumina [at least 624044] (imputed)	N
2090	chr1	197342379	197342380	rs72740550	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q31.3	NR	rs72740550-A	0.217111731298085	3E-13		0.013800633	[0.01-0.018] unit decrease	NR [NR]	N
2090	chr1	197342379	197342380	rs72740550	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q31.3	NR	rs72740550-A	0.217111731298085	3E-13		0.008812358	[0.0064-0.0112] unit decrease	NR [NR]	N
2090	chr1	197351038	197351039	rs2476023	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	1q31.3	CRB1	rs2476023-?	NR	1E-38		1.2610341	[1.22-1.31]	Illumina [13537761] (imputed)	N
2090	chr1	197352968	197352969	rs2759656	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	3,566 European ancestry individuals	4,680 European ancestry individuals	1q31.3		rs2759656-A	0.227698864	1E-79				Illumina [7417619] (imputed)	N
2090	chr1	197359998	197359999	rs4418639	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q31.3	CRB1	rs4418639-G	0.405502	3E-17		0.0158744	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
2090	chr1	197359998	197359999	rs4418639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q31.3		rs4418639-?	NR	9E-15				NR [~ 8900000] (imputed)	N
2090	chr1	197359998	197359999	rs4418639	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q31.3		rs4418639-?	NR	5E-14		0.0157165	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
2090	chr1	197365315	197365316	rs566288288	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q31.3	CRB1	rs566288288-A	0.0017	4E-6		0.8009	[0.46-1.14] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2090	chr1	197375466	197375467	rs6689858	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1q31.3	CRB1	rs6689858-C	0.29	2E-7				Illumina [7347414] (imputed)	N
2090	chr1	197384425	197384426	rs2759663	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q31.3		rs2759663-G	0.790831	2E-11		1.0346854	[1.02-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
2090	chr1	197384425	197384426	rs2759663	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q31.3	NR	rs2759663-G	0.2186	1E-7		0.0075	[0.0048-0.0102] unit decrease	NR [7666894] (imputed)	N
2090	chr1	197384425	197384426	rs2759663	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1q31.3	NR	rs2759663-C	0.224411	3E-12		6.984	unit increase	NR [10847151] (imputed)	N
2090	chr1	197384425	197384426	rs2759663	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	1q31.3	NR	rs2759663-C	0.224411	3E-9		5.94	z score increase	NR [10847151] (imputed)	N
2090	chr1	197388869	197388870	rs78108344	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	1q31.3		rs78108344-?	NR	4E-9				NR [9705931] (imputed)	N
2090	chr1	197388869	197388870	rs78108344	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q31.3	NR	rs78108344-T		2E-9		0.0299671	[0.02-0.04] unit decrease	NR [6694342]	N
2091	chr1	197402203	197402204	rs34949598	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	1q31.3	NR	rs34949598-A	0.2156	3E-6		0.173	[0.1-0.25] unit increase	Illumina [10677593] (imputed)	N
2091	chr1	197404687	197404688	rs142090517	29155802	Huckins LM	2017-07-25	Mol Psychiatry	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Anorexia nervosa	2,158 European ancestry female cases, 15 ,485 European ancestry controls	1,299 European ancestry cases, 3,733 European ancestry controls	1q31.3	CRB1	rs142090517-A	0.01	3E-6		11.97		Illumina [up to 524954]	N
2091	chr1	197445492	197445494	rs60251464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	1q31.3	NR	rs60251464-T	NR	1E-9		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2091	chr1	197446701	197446702	rs1135810	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q31.3	NR	rs1135810-T	NR	4E-10		6.266	z score decrease	Affymetrix [10847151] (imputed)	N
2091	chr1	197452913	197452914	rs114143322	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Tanning	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	1q31.3	NR	rs114143322-?	NR	1E-6				Illumina [at least 241929] (imputed)	N
2091	chr1	197470858	197470859	rs12126163	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	1q31.3		rs12126163-C	NR	3E-6		0.86951	[0.52-1.22] unit decrease	Illumina [NR] (imputed)	N
2091	chr1	197488568	197488569	rs10922244	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	1q31.3	NR	rs10922244-C	0.4444	1E-9		0.0146	[0.0099-0.0193] unit decrease	Illumina [NR] (imputed)	N
2091	chr1	197499002	197499003	rs12120143	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	1q31.3	DENND1B	rs12120143-T		6E-9		5.467	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
2091	chr1	197508900	197508901	rs4915551	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Chin morphology	2,659 Han Chinese ancestry individuals	NA	1q31.3	DENND1B	rs4915551-?		1E-12				Illumina [4757938] (imputed)	N
2091	chr1	197512403	197512404	rs12118913	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q31.3	NR	rs12118913-T		2E-9		0.0292513	[0.02-0.039] unit increase	NR [6694342]	N
2091	chr1	197517085	197517086	rs12118513	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q31.3	NR	rs12118513-A	0.2148	1E-7		0.0076	[0.0049-0.0103] unit decrease	NR [7666894] (imputed)	N
2092	chr1	197559323	197559324	rs6702421	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	1q31.3	NR	rs6702421-G		2E-6				Illumina [458525]	N
2092	chr1	197599029	197599030	rs10737693	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q31.3	NR	rs10737693-T	0.223159	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
2092	chr1	197599029	197599030	rs10737693	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1q31.3	NR	rs10737693-T	0.223159	5E-12		6.898	unit decrease	NR [10847151] (imputed)	N
2092	chr1	197599029	197599030	rs10737693	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	1q31.3	NR	rs10737693-T	0.223159	3E-10		6.28	z score decrease	NR [10847151] (imputed)	N
2092	chr1	197608611	197608612	rs6682968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q31.3		rs6682968-T	NR	1E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2092	chr1	197608611	197608612	rs6682968	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q31.3	NR	rs6682968-T	0.2135	1E-16				NR [9056863] (imputed)	N
2092	chr1	197609339	197609340	rs12090451	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs12090451-T	NR	5E-6		0.27942	[0.16-0.4] unit decrease	Illumina [NR] (imputed)	N
2092	chr1	197611681	197611682	rs16841842	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	1q31.3		rs16841842-?	NR	1E-13		0.0265	unit decrease	NR [NR]	N
2092	chr1	197611681	197611682	rs16841842	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1q31.3	DENND1B	rs16841842-C	0.783416	5E-7		0.0322	[0.018-0.046] unit increase	Illumina [1220000] (imputed)	N
2092	chr1	197629341	197629342	rs1775453	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	1q31.3	DENND1B	rs1775453-C	0.26	2E-7				Affymetrix [2500000] (imputed)	N
2092	chr1	197631140	197631141	rs2488389	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	NR	rs2488389-A	0.2092	9E-8	(EA)	1.0841732	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2092	chr1	197631140	197631141	rs2488389	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	NR	rs2488389-A	0.2092	9E-15	(EA)	1.1191661	[1.09-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2092	chr1	197631140	197631141	rs2488389	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q31.3	C1orf53	rs2488389-A	0.22	8E-13		1.115	[1.077-1.153]	Affymetrix, Illumina [1230000] (imputed)	N
2092	chr1	197645448	197645449	rs2224873	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q31.3	NR	rs2224873-A		1E-9		0.0300135	[0.02-0.04] unit decrease	NR [6694342]	N
2093	chr1	197666110	197666111	rs12131588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q31.3	DENND1B	rs12131588-A	0.217425	3E-10		0.016892925	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2093	chr1	197666110	197666111	rs12131588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q31.3	DENND1B	rs12131588-A	0.217411	3E-15		0.021132065	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2093	chr1	197668564	197668565	rs11588864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q31.3		rs11588864-G	NR	1E-8		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2093	chr1	197697625	197697626	rs10754228	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q31.3	NR	rs10754228-T	NR	7E-9		5.795	z score increase	Affymetrix [10847151] (imputed)	N
2093	chr1	197700894	197700895	rs2477059	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q31.3	NR	rs2477059-T	NR	4E-8		5.499	z score increase	Affymetrix [10847151] (imputed)	N
2093	chr1	197701278	197701279	rs2488397	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	1q31.3	DENND1B	rs2488397-C	0.21	2E-8		0.04	NR cups per day increase	NR [NR]	N
2093	chr1	197701278	197701279	rs2488397	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q31.3	CRB1, DENND1B	rs2488397-?		4E-11				Illumina [9725440] (imputed)	N
2093	chr1	197701278	197701279	rs2488397	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q31.3	CRB1, DENND1B	rs2488397-?		5E-11				Illumina [9560910] (imputed)	N
2093	chr1	197701278	197701279	rs2488397	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	NR	rs2488397-?	NR	5E-16	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2093	chr1	197701375	197701376	rs2488398	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q31.3		rs2488398-C	0.19	1E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
2093	chr1	197701375	197701376	rs2488398	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q31.3	NR	rs2488398-C	0.204896436017119	4E-15		0.015180979	[0.011-0.019] unit decrease	NR [NR]	N
2093	chr1	197701375	197701376	rs2488398	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q31.3	NR	rs2488398-C	0.204896436017119	4E-15		0.009693232	[0.0073-0.0121] unit decrease	NR [NR]	N
2093	chr1	197701375	197701376	rs2488398	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1q31.3	CRB1	rs2488398-C	0.215362	8E-13		7.161	unit decrease	NR [10847151] (imputed)	N
2093	chr1	197701668	197701669	rs6428416	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	1q31.3	NR	rs6428416-G	0.419554	4E-8		1.005	[1.003, 1.007]	Affymetrix [39302896] (imputed)	N
2093	chr1	197701991	197701992	rs16841904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q31.3	DENND1B	rs16841904-T	0.212564	4E-11		0.017837776	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2093	chr1	197701991	197701992	rs16841904	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q31.3	CRB1, DENND1B	rs16841904-?		1E-11				NR [7428630] (imputed)	N
2093	chr1	197701991	197701992	rs16841904	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q31.3	DENND1B	rs16841904-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
2093	chr1	197702400	197702401	rs2488401	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q31.3	NA	rs2488401-T		3E-11		0.0150807	[0.011-0.02] unit increase	Illumina [13288253] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	1q31.3	DENND1B	rs2488401-C	0.1829	8E-19		0.024856627	[0.019-0.031] unit increase	NR [9417325] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1q31.3		rs2488401-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1q31.3	NR	rs2488401-T	NR	3E-9		0.01782	[0.012-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q31.3	NR	rs2488401-T	NR	3E-13		7.29	z score decrease	Affymetrix [10847151] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q31.3	CRB1	rs2488401-T	0.209268	2E-9		6.03	z score decrease	NR [10847151] (imputed)	N
2093	chr1	197702400	197702401	rs2488401	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	1q31.3	CRB1	rs2488401-T	0.209268	1E-10		6.45	z score decrease	NR [10847151] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q31.3		rs17641524-T	0.18	2E-22		9.72	z score increase	Affymetrix [9061022] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q31.3	NR	rs17641524-T	0.2071	1E-17				NR [9056863] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1q31.3		rs17641524-T	NR	2E-16		0.202563	[0.15-0.25] unit increase	NR [2787054] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	1q31.3	NR	rs17641524-C	0.7909	8E-20		1.0245901	[1.02-1.03]	NR [8098588] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q31.3	Intergenic	rs17641524-T	0.2089	1E-12	(MTAG)	0.0114	[0.0083-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	1q31.3	NR	rs17641524-T	0.2086	2E-7		0.0075	[0.0048-0.0102] unit decrease	NR [7666894] (imputed)	N
2093	chr1	197704716	197704717	rs17641524	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	1q31.3	DENND1B	rs17641524-T	0.17000000000000004	1E-11		1.2987013	NR	Illumina [1143634] (imputed)	N
2093	chr1	197707150	197707153	rs59365945	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	1q31.3	NR	rs59365945-GCCT	0.2476	5E-7		0.1765	[0.25-0.11] unit increase	Illumina [10677593] (imputed)	N
2093	chr1	197711491	197711492	rs1747817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.3		rs1747817-T	0.7614	2E-8		0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2093	chr1	197722239	197722240	rs2488393	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	1q31.3	DENND1B	rs2488393-A	0.21	4E-12		1.28	[1.19-1.37]	Illumina [237619] (imputed)	N
2093	chr1	197725372	197725373	rs10922273	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	1q31.3		rs10922273-T	NR	2E-6		0.28535	[0.17-0.4] unit decrease	Illumina [NR] (imputed)	N
2093	chr1	197727641	197727642	rs1998598	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1q31.3	DENND1B	rs1998598-G	0.302	9E-9		1.04	[1.00-1.09]	Affymetrix, Illumina [953241] (imputed)	N
2093	chr1	197743505	197743506	rs1539414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.3		rs1539414-A	0.212	1E-11	(conditional-joint)	0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2093	chr1	197743505	197743506	rs1539414	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	1q31.3	NR	rs1539414-A		4E-6		1.26	[1.14-1.39]	Illumina [109812]	N
2093	chr1	197746229	197746229	rs151133986	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs151133986-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	2E-9				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	1E-9				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	7E-11				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	1E-9				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	3E-10				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q31.3		rs9427672-?	NR	1E-9				NR [NR]	N
2093	chr1	197754740	197754741	rs9427672	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	1q31.3	NR	rs9427672-?	NR	3E-7				NR [NR] (imputed)	N
2093	chr1	197754740	197754741	rs9427672	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	1q31.3	DENND1B	rs9427672-G	0.76	3E-8		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
2093	chr1	197754740	197754741	rs9427672	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	1q31.3	NR	rs9427672-A	0.2352	3E-8		0.0183	[0.012-0.025] unit decrease	Illumina [NR] (imputed)	N
2093	chr1	197754740	197754741	rs9427672	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	1q31.3	NR	rs9427672-A	0.2347	1E-8		0.0147	[0.0096-0.0198] unit decrease	Illumina [NR] (imputed)	N
2093	chr1	197754740	197754741	rs9427672	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1q31.3	NR	rs9427672-A	0.256	4E-6		0.018104669	[0.01-0.026] unit decrease	Affymetrix [up to 6544775] (imputed)	N
2093	chr1	197780965	197780966	rs12123169	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1q31.3		rs12123169-A	NR	1E-17		0.217895	[0.17-0.27] unit increase	NR [5054572] (imputed)	N
2093	chr1	197781197	197781198	rs12134279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q31.3		rs12134279-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2093	chr1	197781197	197781198	rs12134279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q31.3	intergenic	rs12134279-T	0.2078	1E-9		0.02673046	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2093	chr1	197781197	197781198	rs12134279	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	1q31.3	DENND1B	rs12134279-T	0.20	2E-14		1.34	[1.25-1.45]	Illumina [507467]	N
2093	chr1	197785419	197785420	rs12121863	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	1q31.3	NR	rs12121863-A		4E-10		0.0328269	[0.023-0.043] unit increase	NR [6694342]	N
2094	chr1	197788561	197788562	rs12125942	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1q31.3	NR	rs12125942-G	0.182606038728447	6E-11		0.0077735903	[0.0054-0.0101] unit decrease	NR [NR]	N
2094	chr1	197799363	197799364	rs113204513	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs113204513-?		5E-8	(External capsule )			NR [8955960] (imputed)	N
2094	chr1	197799363	197799364	rs113204513	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs113204513-?		3E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
2094	chr1	197799363	197799364	rs113204513	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs113204513-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
2094	chr1	197808777	197808778	rs17642632	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	1q31.3	NR	rs17642632-A		3E-7				Illumina [458525]	N
2094	chr1	197808777	197808778	rs17642632	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1q31.3	NR	rs17642632-A	0.189359	3E-10		6.291	unit increase	NR [10847151] (imputed)	N
2094	chr1	197810078	197810079	rs12140293	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q31.3		rs12140293-G	0.811	4E-10		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
2094	chr1	197814684	197814685	rs10922300	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q31.3	NR	rs10922300-T	0.168	2E-9		0.00875647	[0.0059-0.0116] unit decrease	NR [9732723] (imputed)	N
2094	chr1	197814822	197814823	rs12403425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q31.3		rs12403425-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2094	chr1	197822832	197822833	rs60595076	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs60595076-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
2094	chr1	197822832	197822833	rs60595076	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs60595076-?		2E-11	(Cingulate gyrus)			NR [8955960] (imputed)	N
2094	chr1	197822976	197822977	rs12145078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.3		rs12145078-A	0.2074	3E-13		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2094	chr1	197822976	197822977	rs12145078	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q31.3	NR	rs12145078-A	NR	6E-11		6.548	z score decrease	Affymetrix [10847151] (imputed)	N
2094	chr1	197822993	197822994	rs12145083	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1q31.3	NR	rs12145083-A	NR	2E-8		0.01663	[0.011-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
2094	chr1	197837566	197837567	rs72744965	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	1q31.3	C1orf53	rs72744965-T	0.696	3E-6		0.38	[0.22-0.54] unit decrease	Illumina [6007542] (imputed)	N
2094	chr1	197842143	197842144	rs12069217	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1q31.3	NR	rs12069217-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
2094	chr1	197867404	197867405	rs10922324	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	1q31.3	NR	rs10922324-T	0.19	4E-6		1.0416667	[-0.97713-3.06047]	Affymetrix [at least 143006] (imputed)	N
2094	chr1	197868280	197868281	rs2062479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q31.3	NR	rs2062479-C	0.524073	2E-8		0.016408	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
2094	chr1	197876532	197876533	rs1546244	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	1q31.3	C1orf53	rs1546244-C	NR	2E-8		0.444	[0.29-0.6] unit increase	NR [11024754] (imputed)	N
2094	chr1	197907553	197907554	rs34780702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q31.3		rs34780702-A	0.7635	2E-11		0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2094	chr1	197907553	197907554	rs34780702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q31.3	Intergenic	rs34780702-A	0.7635	7E-10	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2094	chr1	197910859	197910860	rs4915136	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q31.3	LHX9	rs4915136-A	0.4	2E-10		0.0077	[0.0053-0.0101] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2095	chr1	197920993	197920994	rs116245320	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	1q31.3	NR	rs116245320-?	NR	9E-6		0.4517	[0.24-0.66] unit decrease	Illumina [at least 560000] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q31.3	NR	rs17583875-A	0.02107199999999998	3E-23		0.026713	[0.021-0.032] unit increase	Affymetrix [16582909] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q31.3	NR	rs17583875-A	0.02086699999999997	2E-12		0.0289756	[0.021-0.037] unit increase	Affymetrix [16585854] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q31.3	NR	rs17583875-A	0.021283000000000052	1E-9		0.0233937	[0.016-0.031] unit increase	Affymetrix [16582621] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q31.3	NR	rs17583875-A	0.02107199999999998	3E-18		0.0266275	[0.02-0.033] unit increase	Affymetrix [16582965] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q31.3	NR	rs17583875-A	0.02086699999999997	8E-9		0.027433	[0.018-0.037] unit increase	Affymetrix [16585866] (imputed)	N
2095	chr1	197924769	197924770	rs17583875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q31.3	NR	rs17583875-A	0.021283000000000052	2E-9		0.0241962	[0.016-0.032] unit increase	Affymetrix [16582614] (imputed)	N
2095	chr1	197957520	197957521	rs34414349	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q31.3	NR	rs34414349-?	NR	3E-8				Illumina [7760689] (imputed)	N
2095	chr1	197976443	197976444	rs12561995	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q31.3		rs12561995-?	NR	3E-12		0.0175271	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
2095	chr1	197999907	197999908	rs6701977	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q31.3	LHX9	rs6701977-A	0.86618	9E-12		0.0183517	[0.013-0.024] unit increase	NR [13737936] (imputed)	N
2095	chr1	198002354	198002355	rs2884691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q31.3		rs2884691-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2095	chr1	198026904	198026905	rs77634072	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (3'-fucosyllactose) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	1q31.3		rs77634072-?	NR	6E-10				Illumina [1128286]	N
2096	chr1	198075475	198075476	rs148286306	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q31.3	NEK7	rs148286306-A	0.9962	2E-6		0.3214	[0.19-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2096	chr1	198096547	198096548	rs78720557	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	1q31.3	NEK7	rs78720557-A	0.201	5E-8				Illumina [7300000] (imputed)	N
2096	chr1	198099376	198099377	rs34632203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q31.3		rs34632203-T	NR	4E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2096	chr1	198151142	198151143	rs1938376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q31.3		rs1938376-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2096	chr1	198163628	198163628	rs576220966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q31.3		rs576220966-TGTTGTTTCCCTCTATGTGTCC	NR	5E-8		0.0206	[0.013-0.028] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2096	chr1	198178278	198178278	rs151014022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q31.3		rs151014022-ATG	NR	2E-10		0.0201	[0.014-0.026] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2097	chr1	198219386	198219387	rs199769930	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q31.3	NEK7	rs199769930-G	0.842947	4E-9		0.017337	[0.012-0.023] unit increase	NR [16516521] (imputed)	N
2097	chr1	198221838	198221839	rs189724396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q31.3		rs189724396-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2097	chr1	198222214	198222215	rs55833332	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	1q31.3	NEK7	rs55833332-G	0.0095	5E-8		0.055339847	[0.035-0.075] unit increase	Illumina [up to 29454346] (imputed)	N
2097	chr1	198291983	198291984	rs149485803	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q31.3	NR	rs149485803-T	0.0122	1E-9	(EPHX1)	5.162	NR unit increase	Illumina [1671387] (imputed)	N
2098	chr1	198340474	198340475	rs4326656	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q31.3	ATP6V1G3	rs4326656-A	0.709	4E-10		0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
2099	chr1	198453919	198453920	rs4915287	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q31.3	NR	rs4915287-A	0.866847	1E-10		0.0191304	[0.013-0.025] unit decrease	NR [NR]	N
2099	chr1	198455390	198455391	rs143554274	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	1q31.3	ATP6V1G3	rs143554274-T	0.0093	1E-9		0.0618653	[0.042-0.082] unit increase	Illumina [up to 29454346] (imputed)	N
2099	chr1	198455390	198455391	rs143554274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q31.3		rs143554274-T	0.00811300000000004	2E-10		0.084001504	[0.058-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
2099	chr1	198455390	198455391	rs143554274	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q31.3	NR	rs143554274-T	0.008501	2E-13		0.083585	[0.061-0.106] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2099	chr1	198469161	198469162	rs10922438	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	1q31.3	ATP6V1G3	rs10922438-T	0.106	6E-6	(Allelic model)	2.301	[1.608-3.293]	Illumina [733202]	N
2099	chr1	198484406	198484407	rs10922442	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1q31.3	NR	rs10922442-?	NR	6E-6		1.4	[1.3-1.51]	Illumina [539000] (imputed)	N
2099	chr1	198498783	198498784	rs188626852	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1q31.3		rs188626852-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2099	chr1	198514637	198514637	rs200282306	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q31.3		rs200282306-AG	0.0051	3E-13		1.37	[1-1.74] unit increase	Illumina [18335935] (imputed)	N
2099	chr1	198514637	198514637	rs200282306	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q31.3		rs200282306-AG	0.00516	2E-26		1.925	[1.57-2.28] unit increase	Illumina [18353565] (imputed)	N
2099	chr1	198514637	198514637	rs200282306	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q31.3		rs200282306-AG	0.00516	2E-26		1.907	[1.56-2.26] unit decrease	Illumina [18353565] (imputed)	N
2099	chr1	198517307	198517308	rs6675366	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs obsessive compulsive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 2,688 OCD cases	NA	1q31.3		rs6675366-?	NR	4E-8		0.018	NR unit increase	NR [6311569] (imputed)	N
2099	chr1	198524096	198524097	rs10922449	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	1q31.3	NR	rs10922449-?	NR	2E-6				Illumina [7500450] (imputed)	N
2099	chr1	198524263	198524264	rs146620586	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	1q31.3	ATP6V1G3	rs146620586-T	0.0188	7E-6		0.1333	[0.075-0.192] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q31.3		rs16843346-T	NR	1E-117		0.0884	[0.081-0.096] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	1q31.3		rs16843346-T	0.196656	1E-11		0.0308918	[0.022-0.04] unit increase	Illumina [13477028] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1q31.3		rs16843346-T	0.19652	5E-65		0.0779477	[0.069-0.087] unit increase	Illumina [13476299] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q31.3		rs16843346-C	0.972	2E-66		0.57	[-0.64--0.51] % decrease	Affymetrix [NR] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q31.3		rs16843346-T	0.0286	9E-55		0.10547449	[0.092-0.119] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q31.3		rs16843346-T	0.028586	1E-60		0.11233499	[0.099-0.126] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q31.3		rs16843346-T	0.02861	1E-95		0.141893	[0.13-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr1	198543026	198543027	rs16843346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs16843346-T	0.0577205	1E-194				Affymetrix, Illumina [24246363] (imputed)	N
2099	chr1	198543094	198543095	rs16843350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1q31.3		rs16843350-T	0.196762	3E-13		0.0311949	[0.023-0.04] unit decrease	Illumina [13479091] (imputed)	N
2099	chr1	198543094	198543095	rs16843350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q31.3		rs16843350-T	NR	1E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2099	chr1	198543094	198543095	rs16843350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs16843350-T	0.051128	2E-11				Affymetrix, Illumina [23114412] (imputed)	N
2099	chr1	198544729	198544730	rs12742531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q31.3		rs12742531-A	NR	5E-11		0.0234	[0.017-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2099	chr1	198544729	198544730	rs12742531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs12742531-A	0.0946482	2E-33				Affymetrix, Illumina [24649327] (imputed)	N
2099	chr1	198544841	198544842	rs79894581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q31.3		rs79894581-A	0.028894	3E-10		0.041700214	[0.029-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
2099	chr1	198545196	198545197	rs78210986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q31.3		rs78210986-T	NR	2E-24		0.0371	[0.03-0.044] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2099	chr1	198545196	198545197	rs78210986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	1q31.3	NR	rs78210986-A	0.81091	2E-31		0.055191	[0.046-0.064] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
2099	chr1	198547015	198547015	rs141142568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1q31.3		rs141142568-TAACTC	0.201298	5E-37		0.0492899	[0.042-0.057] unit decrease	Illumina [13479135] (imputed)	N
2099	chr1	198547015	198547015	rs141142568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q31.3		rs141142568-TAACTC	0.201417	4E-59		0.0722759	[0.064-0.081] unit increase	Illumina [13476266] (imputed)	N
2099	chr1	198547232	198547233	rs34544423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1q31.3	NR	rs34544423-C	0.801921	7E-52		0.077464	[0.067-0.087] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
2099	chr1	198547232	198547233	rs34544423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	1q31.3	NR	rs34544423-C	0.801885	5E-10		0.031072	[0.021-0.041] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
2099	chr1	198547232	198547233	rs34544423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	1q31.3	NR	rs34544423-C	0.80193	3E-57		0.081966	[0.072-0.092] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
2099	chr1	198547232	198547233	rs34544423	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1q31.3	ATP6V1G3, PTPRC	rs34544423-?	NR	3E-44		0.07457	[0.064-0.085] unit increase novel	Illumina [6108953] (imputed)	N
2099	chr1	198547232	198547233	rs34544423	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1q31.3	ATP6V1G3, PTPRC	rs34544423-?	NR	2E-47		0.07728	[0.067-0.088] unit increase novel	Illumina [6108953] (imputed)	N
2099	chr1	198548924	198548925	rs11586087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs11586087-A	0.0851202	2E-13				Affymetrix, Illumina [23467995] (imputed)	N
2099	chr1	198549778	198549779	rs78024727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q31.3		rs78024727-?	NR	6E-54				NR [~ 8900000] (imputed)	N
2099	chr1	198549778	198549779	rs78024727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q31.3		rs78024727-?	NR	5E-102				NR [~ 8900000] (imputed)	N
2099	chr1	198552899	198552900	rs139164185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q31.3		rs139164185-A	NR	9E-122		0.09	[0.083-0.097] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2099	chr1	198552899	198552900	rs139164185	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q31.3	intergenic	rs139164185-A	0.0287	2E-52		0.1625465	[0.14-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
2099	chr1	198557672	198557673	rs61491840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q31.3	NR	rs61491840-G	0.02949	1E-121		0.133646	[0.12-0.14] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2099	chr1	198558568	198558569	rs58212910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs58212910-T	0.0609155	4E-177				Affymetrix, Illumina [20825802] (imputed)	N
2099	chr1	198559464	198559464	rs144723251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q31.3		rs144723251-TGTCTTTAGGGGGTTTGA	NR	2E-13		0.0289	[0.021-0.037] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2099	chr1	198561841	198561842	rs58272892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	1q31.3	NR	rs58272892-A	0.809136	2E-12		0.032931	[0.024-0.042] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
2099	chr1	198564108	198564109	rs76186171	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q31.3	RP11-553K8.2	rs76186171-C	0.0285	4E-9		0.06360659	[0.042-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
2099	chr1	198564650	198564651	rs191336361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q31.3	RP11-553K8.2	rs191336361-T	0.0292480000000001	9E-14		0.050417766	[0.037-0.064] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr1	198566553	198566554	rs12747432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q31.3	NR	rs12747432-T	0.066638	1E-10		0.02404	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2099	chr1	198568181	198568182	rs16843412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q31.3	RP11-553K8.2	rs16843412-G	0.029228	3E-107		0.14441602	[0.13-0.16] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr1	198571121	198571122	rs7412308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q31.3	RP11-553K8.2	rs7412308-A	0.0291979999999999	2E-48		0.09625308	[0.083-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
2099	chr1	198571121	198571122	rs7412308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q31.3	NR	rs7412308-A	0.029795	1E-141		0.135288	[0.12-0.15] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2100	chr1	198581290	198581291	rs146310930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q31.3	intergenic	rs146310930-T	0.0291	1E-26		0.1136681	[0.093-0.134] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198581329	198581330	rs79112896	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	1q31.3	ATP6V1G3, PTPRC	rs79112896-?	NR	3E-18		0.04968	[0.039-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
2100	chr1	198583297	198583298	rs12122584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	1q31.3	NR	rs12122584-A	0.802504	2E-10		0.040114	[0.028-0.052] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
2100	chr1	198584021	198584022	rs28398409	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	1q31.3	ATP6V1G3, PTPRC	rs28398409-?	NR	1E-8		0.03663	[0.024-0.049] unit increase novel	Illumina [6108953] (imputed)	N
2100	chr1	198587552	198587553	rs76872607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs76872607-C	0.0623001	1E-16				Affymetrix, Illumina [21126107] (imputed)	N
2100	chr1	198587552	198587553	rs76872607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q31.3	NR	rs76872607-C	0.029849	9E-10		0.036304	[0.025-0.048] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2100	chr1	198594768	198594769	rs34889541	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q31.3	PTPRC, CD45	rs34889541-G	0.93	2E-12		1.2345679	[1.16-1.32]	NR [6344733] (imputed)	N
2100	chr1	198594768	198594769	rs34889541	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q31.3	PTPRC, CD45	rs34889541-G	0.86	3E-10	(Chinese)	1.2820514	[1.19-1.39]	NR [6344733] (imputed)	N
2100	chr1	198594781	198594782	rs12139775	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q31.3	intergenic	rs12139775-T	0.0675	2E-11		0.04823992	[0.034-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198595098	198595099	rs16843520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	1q31.3		rs16843520-G	0.197581	8E-10		0.0346494	[0.024-0.046] unit decrease	Illumina [13469940] (imputed)	N
2100	chr1	198595505	198595506	rs12127588	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q31.3	PTPRC	rs12127588-A	NR	6E-8	(Asian)	0.0046	[0.003-0.0062] unit increase	NR [2500000] (imputed)	N
2100	chr1	198595505	198595506	rs12127588	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q31.3	PTPRC	rs12127588-?	NR	4E-9				NR [2500000] (imputed)	N
2100	chr1	198595505	198595506	rs12127588	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	1q31.3	ATP6V1G3, PTPRC	rs12127588-A	0.21	7E-10		0.09	[0.061-0.119] unit increase	Illumina [561583]	N
2100	chr1	198598389	198598389	rs570794153	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1q31.3	PTPRC	rs570794153-GA	0.139675	4E-11		0.14543974	[0.1-0.19] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
2100	chr1	198598389	198598389	rs570794153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1q31.3	intergenic	rs570794153-GA	0.1404	3E-10		0.03273696	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198598389	198598389	rs570794153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1q31.3	intergenic	rs570794153-GA	0.1404	3E-15		0.04085477	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198598389	198598389	rs570794153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1q31.3	intergenic	rs570794153-GA	0.1404	4E-12		0.03603288	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198598389	198598389	rs570794153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1q31.3	intergenic	rs570794153-GA	0.1404	2E-14		0.03971142	[0.03-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198598662	198598663	rs7555082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	1q31.3		rs7555082-A	NR	5E-9		0.0819	[0.054-0.109] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2100	chr1	198598662	198598663	rs7555082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q31.3		rs7555082-A	0.117607	3E-14		0.026134457	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198598662	198598663	rs7555082	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q31.3	PTPRC	rs7555082-?		9E-6				Illumina [9560910] (imputed)	N
2100	chr1	198598662	198598663	rs7555082	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	PTPRC	rs7555082-A	0.1069	3E-9	(EA)	1.1006883	[1.07-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2100	chr1	198598662	198598663	rs7555082	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	PTPRC	rs7555082-A	0.1069	1E-10	(EA)	1.1317531	[1.09-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2100	chr1	198599816	198599817	rs144600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q31.3		rs144600858-A	0.023671	4E-9		0.04358051	[0.029-0.058] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198599816	198599817	rs144600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q31.3		rs144600858-A	0.023719	3E-9		0.044052985	[0.029-0.059] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198601704	198601705	rs76181804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	1q31.3		rs76181804-G	NR	9E-10		0.0808	[0.055-0.107] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
2100	chr1	198601704	198601705	rs76181804	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q31.3	PTPRC	rs76181804-A	0.883985	3E-13		1.0707214	[1.05129066887765-1.09051130836444]	NR [9572556] (imputed)	N
2100	chr1	198601704	198601705	rs76181804	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q31.3	PTPRC	rs76181804-A	0.882422	3E-8		1.0528406	[1.03-1.07]	Affymetrix [8274727] (imputed)	N
2100	chr1	198601704	198601705	rs76181804	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q31.3	NR	rs76181804-?	NR	1E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2100	chr1	198610535	198610536	rs75567729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q31.3		rs75567729-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2100	chr1	198613954	198613955	rs1326269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q31.3	PTPRC	rs1326269-A	0.393601	4E-23		0.023462147	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198613954	198613955	rs1326269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q31.3	PTPRC	rs1326269-A	0.393534	6E-13		0.017234942	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198613954	198613955	rs1326269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q31.3	PTPRC	rs1326269-A	0.393526	8E-17		0.0172199	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198622446	198622447	rs80099993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q31.3	PTPRC	rs80099993-A	0.117846	2E-14		0.02637963	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198623841	198623842	rs17668272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q31.3	PTPRC	rs17668272-T	0.117893	1E-33		0.041448746	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2100	chr1	198634624	198634625	rs1052238	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q31.3	PTPRC	rs1052238-T	0.47	3E-9		5.91	z-score increase	Affymetrix [4314223] (imputed)	N
2100	chr1	198634996	198634997	rs3767742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q31.3	RP11-553K8.5, PTPRC	rs3767742-C	0.859537	6E-10		0.020144466	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198640487	198640488	rs17668708	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	1q31.3	PTPRC	rs17668708-?	NR	3E-13		1.087	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
2100	chr1	198640487	198640488	rs17668708	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q31.3	PTPRC	rs17668708-C	NR	4E-10		1.071	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
2100	chr1	198645050	198645051	rs74134783	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q31.3	NR	rs74134783-A	NR	6E-13		0.0288	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
2100	chr1	198645458	198645459	rs3754097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q31.3	PTPRC	rs3754097-T	0.027386	4E-19		0.060811277	[0.047-0.074] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198653173	198653174	rs17669032	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q31.3	PTPRC	rs17669032-A	0.9	3E-12				NR [> 9500000] (imputed)	N
2100	chr1	198653173	198653174	rs17669032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q31.3		rs17669032-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2100	chr1	198656406	198656407	rs2359952	24837172	Juyal G	2014-05-16	Gut	Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.	Ulcerative colitis	603 North Indian ancestry cases, 622 North Indian ancestry controls	733 North Indian ancestry cases, 1,148 North Indian ancestry controls	1q31.3	PTPRC	rs2359952-A	0.6	4E-7		1.31	[1.13-1.51]	Illumina [480391]	N
2100	chr1	198657849	198657850	rs3767745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	1q31.3	NR	rs3767745-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2100	chr1	198660011	198660012	rs76083778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q31.3		rs76083778-A	NR	1E-11		0.0259	[0.018-0.033] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q31.3		rs10494783-A	NR	2E-19		0.0315	[0.025-0.038] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q31.3		rs10494783-G	0.949	6E-18				Affymetrix [10369434] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1q31.3		rs10494783-G	0.949	2E-17				Affymetrix [10369434] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q31.3	PTPRC	rs10494783-A	0.0513	1E-21		0.04774292	[0.038-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q31.3	PTPRC	rs10494783-A	0.051277	3E-23		0.049973104	[0.04-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q31.3	NR	rs10494783-A	0.052086	4E-26		0.043813	[0.036-0.052] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q31.3	NR	rs10494783-A	0.0987372	3E-36				Affymetrix, Illumina [23472807] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q31.3	NR	rs10494783-A	0.051764	9E-37		0.054095	[0.046-0.062] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2100	chr1	198663660	198663661	rs10494783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q31.3		rs10494783-?	NR	5E-24				NR [~ 8900000] (imputed)	N
2100	chr1	198664101	198664102	rs3767747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q31.3		rs3767747-?	NR	1E-18				NR [~ 8900000] (imputed)	N
2100	chr1	198665916	198665917	rs17612648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q31.3	PTPRC	rs17612648-G	0.014618	1E-11		0.06584641	[0.047-0.085] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	1q31.3		rs2296618-G	NR	4E-10		0.0852	[0.059-0.112] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	1q31.3		rs2296618-A	0.864	1E-15				Affymetrix [10369434] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	1q31.3	PTPRC	rs2296618-G	0.135293311099492	1E-10		0.061879832	[0.043-0.081] unit decrease	Affymetrix [35186738] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q31.3	PTPRC	rs2296618-G	0.136389	3E-35		0.040209554	[0.034-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1q31.3	PTPRC, MIR181A1HG, ATP6V1G3, MIR181B1, MIR181A1, LINC01222	rs2296618-A	0.8647	7E-10		1.0592659	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	1q31.3	PTPRC	rs2296618-G	0.131595	3E-9		0.07941922	[0.053-0.106] unit decrease	Affymetrix [7288503] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q31.3		rs2296618-?	NR	1E-42				NR [~ 8900000] (imputed)	N
2100	chr1	198666231	198666232	rs2296618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1q31.3	PTPRC	rs2296618-G	0.139	5E-12		0.03591953	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198670468	198670469	rs4143303	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q32.1	PTPRC	rs4143303-A	0.14	4E-9		0.88	[0.84-0.92]	Illumina [11270530] (imputed)	N
2100	chr1	198672298	198672299	rs16843742	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	1q32.1	PTPRC	rs16843742-T	0.77	1E-9		1.199904	[1.14-1.27]	Illumina [8966411] (imputed)	N
2100	chr1	198674564	198674565	rs76273496	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	1q32.1	intergenic	rs76273496-C	0.07	3E-6		3.68	[2.13-6.33]	NR [~ 38000000] (imputed)	N
2100	chr1	198680014	198680015	rs12733073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.1	PTPRC	rs12733073-A	0.00989899999999999	3E-9		0.069945544	[0.047-0.093] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198680014	198680015	rs12733073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q32.1	PTPRC	rs12733073-A	0.00991699999999995	4E-15		0.09307557	[0.07-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
2100	chr1	198680014	198680015	rs12733073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q32.1	PTPRC	rs12733073-A	0.00989799999999996	1E-10		0.07645854	[0.053-0.1] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198680014	198680015	rs12733073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.1	PTPRC	rs12733073-A	0.00989700000000004	3E-24		0.120559275	[0.097-0.144] unit increase	Affymetrix [93095623] (imputed)	N
2100	chr1	198680014	198680015	rs12733073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q32.1	PTPRC	rs12733073-A	0.0105	1E-11		0.1311184	[0.093-0.169] unit increase	Affymetrix [~ 2500000] (imputed)	N
2100	chr1	198691842	198691844	rs10531214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	PTPRC	rs10531214-T	0.125565	8E-11		0.021834955	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2101	chr1	198707516	198707517	rs113752715	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	1q32.1	NR	rs113752715-?	0.92	2E-6		2.1276596	[1.52-3.03]	Illumina [5216266] (imputed)	N
2101	chr1	198718949	198718950	rs59271985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs59271985-?	NR	2E-19				NR [~ 8900000] (imputed)	N
2101	chr1	198726619	198726620	rs1932437	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	1q32.1	PTPRC	rs1932437-A	0.86	4E-6		1.1111112	[1.06-1.16]	Illumina [133816] (imputed)	N
2101	chr1	198733566	198733567	rs6696533	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	1q32.1	PTPRC, MIR181A1HG	rs6696533-?	NR	3E-8		1.08		Illumina [109572]	N
2101	chr1	198745865	198745866	rs7538393	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q32.1	NR	rs7538393-C	0.120138	1E-14		0.0359066	[0.027-0.045] unit increase	NR [19129689] (imputed)	N
2101	chr1	198775320	198775321	rs10919585	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q32.1	NR	rs10919585-?	NR	2E-10		0.0367	[0.025-0.048] unit increase novel	Illumina [6108953] (imputed)	N
2101	chr1	198777668	198777669	rs142412260	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q32.1	Intergenic	rs142412260-?		1E-6		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
2101	chr1	198804308	198804309	rs200392270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.1	MIR181A1HG	rs200392270-T	0.209652	4E-9		0.01614372	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2101	chr1	198811371	198811372	rs10919593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.1		rs10919593-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2101	chr1	198830941	198830942	rs113116201	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q32.1	LOC100131234	rs113116201-G	0.02	1E-6		1.29	[1.16-1.43]	Illumina [161311]	N
2102	chr1	198839666	198839667	rs1475166	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Dokdonella abundance in stool	5,959 Finnish ancestry individuals	NA	1q32.1		rs1475166-C	0.226455	1E-8		0.0339303	[0.022-0.046] unit increase	Illumina [7980478] (imputed)	N
2102	chr1	198840933	198840934	rs143031547	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	1q32.1	MIR181A1HG	rs143031547-G	0.767	3E-7		1.1682242	[1.1-1.24]	Affymetrix [28509962] (imputed)	N
2102	chr1	198898156	198898157	rs10919604	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q32.1	MIR181A1HG	rs10919604-A	0.6028	1E-6		0.0126	[0.0075-0.0177] unit increase	Affymetrix [19819130] (imputed)	N
2102	chr1	198898156	198898157	rs10919604	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	MIR181A1HG	rs10919604-A	0.6028	4E-16		0.0198	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
2102	chr1	198898156	198898157	rs10919604	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	MIR181A1HG	rs10919604-A	0.6028	7E-6		0.0107	[0.006-0.0154] unit increase	Affymetrix [19819130] (imputed)	N
2102	chr1	198898156	198898157	rs10919604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs10919604-?	NR	4E-24				NR [~ 8900000] (imputed)	N
2103	chr1	198974064	198974065	rs16844046	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q32.1	NR	rs16844046-A	NR	2E-7	(GEE model)	1.2387	[0.77-1.71] unit decrease	NR [NR] (imputed)	N
2103	chr1	198976491	198976492	rs12239179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q32.1	RP11-16L9.3	rs12239179-T	0.7535	5E-13		0.03004522	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	198976491	198976492	rs12239179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q32.1	RP11-16L9.3	rs12239179-T	0.7535	4E-13		0.03016017	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	198976519	198976520	rs12240178	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	1q32.1	NR	rs12240178-G	NR	9E-6		0.018716356	[0.01-0.027] unit decrease	Illumina [NR] (imputed)	N
2103	chr1	198990493	198990494	rs17625587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q32.1	NR	rs17625587-A	0.263625	1E-10		0.01499	[0.01-0.02] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
2103	chr1	198992042	198992043	rs12125200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I13	5,353 Icelandic ancestry individuals	NA	1q32.1		rs12125200-A	0.2507	2E-19		0.191358	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
2103	chr1	198992042	198992043	rs12125200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.1	NR	rs12125200-G	0.734061	2E-57		0.033114	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2103	chr1	198994618	198994619	rs6667939	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q32.1		rs6667939-C	0.281	7E-11				Affymetrix [10369434] (imputed)	N
2103	chr1	198994618	198994619	rs6667939	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.1	intergenic	rs6667939-C		1E-12		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2103	chr1	198994618	198994619	rs6667939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q32.1	PTPRC	rs6667939-C	0.281329	7E-11		0.0151953	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
2103	chr1	198994618	198994619	rs6667939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q32.1	PTPRC	rs6667939-C	0.281269	2E-9		0.0139435	[0.0094-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
2103	chr1	198994697	198994698	rs781255974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs781255974-T	0.7247	2E-36		0.05183133	[0.044-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	198994697	198994698	rs781255974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs781255974-T	0.7249	5E-17		0.03438765	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	198994707	198994708	rs35481188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1q32.1		rs35481188-T	NR	6E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
2103	chr1	198994707	198994708	rs35481188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1q32.1		rs35481188-T	NR	2E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
2103	chr1	199000726	199000727	rs6427756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	1q32.1		rs6427756-A	0.254	8E-14		0.162963	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
2103	chr1	199000726	199000727	rs6427756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs6427756-G	0.733811	1E-39		0.03305844	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2103	chr1	199000726	199000727	rs6427756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs6427756-G	0.74369	3E-17				Affymetrix, Illumina [19905671] (imputed)	N
2103	chr1	199000726	199000727	rs6427756	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	1q32.1	LINC01221	rs6427756-?	NR	2E-8		0.04137	[0.027-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
2103	chr1	199004708	199004709	rs2360962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.1		rs2360962-T	NR	2E-29		0.0251	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2103	chr1	199004708	199004709	rs2360962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs2360962-T	0.750612	3E-73				Affymetrix, Illumina [24588908] (imputed)	N
2103	chr1	199004708	199004709	rs2360962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1q32.1	NR	rs2360962-A	0.191128	3E-16		0.038687	[0.029-0.048] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
2103	chr1	199007207	199007208	rs7529925	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q32.1	LINC01221	rs7529925-?	NR	1E-13		0.03982	[0.029-0.05] unit increase novel	Illumina [6108953] (imputed)	N
2103	chr1	199007207	199007208	rs7529925	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q32.1	NR	rs7529925-?	NR	1E-7				NR [2500000] (imputed)	N
2103	chr1	199007207	199007208	rs7529925	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q32.1	MIR181A1	rs7529925-C	0.28	8E-9	(EA, RBCC)	0.014	[0.010-0.018] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.1		rs1434282-T	NR	4E-78		0.0371	[0.033-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1q32.1		rs1434282-T	0.809011	8E-15		0.0326228	[0.024-0.041] unit increase	Illumina [13478928] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q32.1		rs1434282-T	NR	3E-21		0.0177	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q32.1		rs1434282-T	NR	4E-18		0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q32.1		rs1434282-T	NR	8E-15		0.0196	[0.015-0.025] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.725	9E-17		0.002059	[0.0016-0.0026] unit increase	Affymetrix [NR] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.72458	3E-47		0.035998125	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724571	4E-25		0.025778804	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724637	3E-79		0.04674311	[0.042-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.723961	3E-85		0.049375914	[0.044-0.054] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.723949	8E-40		0.03319821	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724738	9E-70		0.044858146	[0.04-0.05] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724681	2E-28		0.028364245	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724669	1E-111		0.0508833	[0.046-0.055] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724679	3E-61		0.04084352	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724585	4E-14		0.01893466	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724667	6E-45		0.03495651	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724659	2E-28		0.027437937	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724617	2E-25		0.025772635	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.724639	3E-19		0.022232803	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.741893	1E-126				Affymetrix, Illumina [24332387] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.723099	5E-105		0.044906	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1434282-C	0.273853	2E-28				Affymetrix, Illumina [17210439] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q32.1	NR	rs1434282-C	0.276479	4E-31		0.024774	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.741271	1E-30				Affymetrix, Illumina [24653286] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.722837	1E-29		0.023279	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.740721	9E-23				Affymetrix, Illumina [24558453] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.1	NR	rs1434282-T	0.72287	3E-21		0.019483	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs1434282-?	NR	1E-85				NR [~ 8900000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs1434282-?	NR	5E-69				NR [~ 8900000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	1q32.1	NR	rs1434282-?	NR	1E-14		0.04157	[0.031-0.052] unit increase novel	Illumina [6108953] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1q32.1	NR	rs1434282-?	NR	1E-17		0.04615	[0.036-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1q32.1	NR	rs1434282-?	NR	2E-12		0.03811	[0.028-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.7266	8E-23		0.03986365	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.7265	7E-29		0.04484456	[0.037-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.726	6E-9		0.02375724	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.7265	1E-39		0.05252996	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.7267	3E-22		0.03887805	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199010720	199010721	rs1434282	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1434282-T	0.7266	4E-19		0.03616365	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q32.1		rs1036332-C	NR	3E-35		0.0234	[0.02-0.027] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.737428	2E-19		0.022792641	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.738038	2E-40		0.03353934	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1036332-C	0.745819	3E-50				Affymetrix, Illumina [19872809] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q32.1	NR	rs1036332-C	0.737405	2E-47		0.032696	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q32.1		rs1036332-?	NR	7E-39				NR [~ 8900000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.738	4E-21		0.03858552	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.738	7E-17		0.03419079	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.738	1E-20		0.03804784	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.738	2E-17		0.03482244	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199012477	199012478	rs1036332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1q32.1	RP11-16L9.4	rs1036332-C	0.7379	1E-20		0.03810392	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2103	chr1	199068613	199068614	rs322918	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q32.1		rs322918-A	0.539	8E-23		0.11	[0.09-0.13] % increase	Affymetrix [NR] (imputed)	N
2104	chr1	199136195	199136196	rs1905186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs1905186-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2104	chr1	199163361	199163362	rs112009416	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs112009416-C	0.00902	1E-8		0.7482	[0.49-1] unit decrease	Illumina [18353565] (imputed)	N
2104	chr1	199217116	199217117	rs75227923	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	1q32.1	LINC01221, NR5A2	rs75227923-A	0.011075546	4E-6		1.4561167	[1.241032447-1.708477209]	Illumina [10439017] (imputed)	N
2105	chr1	199243227	199243228	rs1325190	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	1q32.1	LOC100131866, NR5A2	rs1325190-?	0.83	2E-6		2.3809524		Illumina [103770]	N
2105	chr1	199291721	199291722	rs10800624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q32.1	Intergenic	rs10800624-C	0.7942	4E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2105	chr1	199293334	199293335	rs6673652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.1	Intergenic	rs6673652-T	0.7942	1E-10	(MTAG)	0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2105	chr1	199315718	199315719	rs12726043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.1	Intergenic	rs12726043-A	0.206	6E-9	(MTAG)	0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2105	chr1	199315997	199315998	rs648163	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1q32.1	NR	rs648163-T	0.2594	1E-8		0.014384918	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2105	chr1	199328929	199328930	rs6660370	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.1		rs6660370-C	0.796	1E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
2105	chr1	199356515	199356516	rs16844716	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1q32.1	intergenic	rs16844716-?	0.09	9E-6		1.65	[1.32-2.07]	Affymetrix [832357]	N
2106	chr1	199363882	199363883	rs7515853	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	1q32.1	RP11-382E9.1	rs7515853-G	0.193757143	6E-6		0.184691	unit increase	Illumina [6969139] (imputed)	N
2106	chr1	199363882	199363883	rs7515853	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	1q32.1	RP11-382E9.1	rs7515853-G	0.193757143	8E-6		0.165655	[0.093-0.238] unit increase	Illumina [6969139] (imputed)	N
2106	chr1	199365001	199365002	rs7541515	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1q32.1		rs7541515-G	NR	3E-8		1.05548		Affymetrix, Illumina [62056310] (imputed)	N
2106	chr1	199418898	199418899	rs2152872	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA		Intergenic	rs2152872-G	0.226095714	2E-6		0.171994	[0.1-0.24] unit increase	Illumina [6969139] (imputed)	N
2106	chr1	199427320	199427321	rs1890132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.1		rs1890132-T	0.7056	7E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2106	chr1	199427320	199427321	rs1890132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.1	Intergenic	rs1890132-T	0.7056	7E-12	(MTAG)	0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2106	chr1	199436639	199436640	rs5011100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q32.1	Intergenic	rs5011100-G	0.6159	5E-12		0.0161	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2106	chr1	199440982	199440983	rs12139351	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q32.1	ENSG00000231718	rs12139351-?	NR	5E-11		0.013982416	[0.0098-0.0182] unit increase	NR [7306098]	N
2106	chr1	199445344	199445345	rs6687986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.1	Intergenic	rs6687986-A	0.637	9E-17	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2106	chr1	199446714	199446715	rs1327078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.1	Intergenic	rs1327078-A	0.3591	4E-14	(MTAG)	0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2106	chr1	199446714	199446715	rs1327078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q32.1	Intergenic	rs1327078-G	0.6409	2E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2106	chr1	199463155	199463156	rs12726943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	1q32.1	intergenic	rs12726943-G	NR	4E-6		0.182985	[0.1-0.26] unit increase	Illumina [7433384] (imputed)	N
2106	chr1	199480514	199480515	rs116400211	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	1q32.1	NR	rs116400211-G	0.011	5E-6		2.75	[1.78-4.25]	Illumina [8672852] (imputed)	N
2107	chr1	199583167	199583168	rs6689945	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	1q32.1	NR5A2	rs6689945-C	0.065957	2E-6		1.53928	[0.92-2.16] unit increase	NR [7263501] (imputed)	N
2107	chr1	199594110	199594111	rs147198392	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs147198392-C	0.00509	4E-11		1.155	[0.81-1.5] unit decrease	Illumina [18335935] (imputed)	N
2108	chr1	199694058	199694059	rs1429702	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	1q32.1	NR5A2	rs1429702-?	NR	8E-6		3.1	1.96-4.87	Illumina [~ 18000000] (imputed)	N
2108	chr1	199701881	199701882	rs143668247	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	1q32.1	NR5A2	rs143668247-?	NR	2E-7		3.66	2.24-5.97	Illumina [~ 18000000] (imputed)	N
2108	chr1	199706429	199706430	rs2502136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.1		rs2502136-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2108	chr1	199719008	199719009	rs4915382	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q32.1	NR	rs4915382-?	NR	2E-8				Illumina [7760689] (imputed)	N
2109	chr1	199798338	199798339	rs6427782	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	1q32.1	NR5A2	rs6427782-A	0.51	5E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2109	chr1	199800433	199800434	rs12043841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs12043841-?	NR	7E-14				NR [~ 8900000] (imputed)	N
2109	chr1	199802015	199802016	rs2809969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q32.1		rs2809969-?	NR	9E-14				NR [~ 8900000] (imputed)	N
2109	chr1	199854672	199854673	rs147738081	34975738	Winsvold BS	2021-12-17	Front Neurol	Genome-Wide Association Study of 2,093 Cases With Idiopathic Polyneuropathy and 445,256 Controls Identifies First Susceptibility Loci.	Idiopathic polyneuropathy	1,147 European ancestry cases, 62,204 European ancestry controls	946 European ancestry cases, 383,052 European ancestry controls	1q32.1		rs147738081-T	0.031	5E-8		1.68	[1.39-2.02]	Illumina [13629169] (imputed)	N
2109	chr1	199855124	199855125	rs10919759	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	1q32.1		rs10919759-A	NR	7E-8		0.00372282	[0.0024-0.0051] years decrease	NR [7400000] (imputed)	N
2109	chr1	199855124	199855125	rs10919759	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	1q32.1		rs10919759-A	NR	1E-9		0.00534421	[0.0036-0.0071] years decrease	NR [7400000] (imputed)	N
2109	chr1	199855124	199855125	rs10919759	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	1q32.1		rs10919759-A	NR	5E-17		0.027199492	[0.021-0.034] years increase	NR [7400000] (imputed)	N
2109	chr1	199857581	199857582	rs6681737	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	1q32.1	NR5A2	rs6681737-?	NR	6E-7		0.027	[0.017-0.038] unit increase	Illumina [12039491]	N
2110	chr1	199891277	199891278	rs12745887	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	1q32.1	NR	rs12745887-T	0.058	2E-6		0.244	[0.15-0.34] unit increase	Illumina [up to 730525]	N
2110	chr1	199891437	199891438	rs6670899	30202859	Laisk T	2018-09-07	Hum Mol Genet	Large scale meta-analysis highlights the hypothalamic-pituitary-gonadal (HPG) axis in the genetic regulation of menstrual cycle length.	Length of menstrual cycle	44,871 European ancestry women	NA	1q32.1	NR5A2	rs6670899-A	0.57	7E-13		0.05	[0.030-0.070] unit decrease UK Biobank	Illumina [9344826] (imputed)	N
2110	chr1	199907715	199907716	rs10919774	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia in obesity	3,431 European ancestry women	NA	1q32.1	NR5A2	rs10919774-?	NR	3E-8		1.98	[NR]	NR [18717781] (imputed)	N
2110	chr1	199919973	199919974	rs113722913	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperinsulinemia x BMI interaction	8,363 European ancestry non-obese women, 3,431 European ancestry obese women	NA	1q32.1	NR5A2	rs113722913-?	NR	1E-8				NR [18717781] (imputed)	N
2110	chr1	199959855	199959856	rs10800664	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	1q32.1	LINC01221, NR5A2	rs10800664-T	0.484	5E-6		0.026	[0.014-0.038] unit decrease	Illumina [7358575] (imputed)	N
2110	chr1	199965167	199965168	rs10919791	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	1q32.1	NR5A2	rs10919791-?	NR	1E-11		1.27	[1.18-1.33]	Illumina [608202]	N
2110	chr1	199977723	199977724	rs2821357	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1q32.1	NR5A2	rs2821357-?	NR	6E-9		0.6083	[0.2-1.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2110	chr1	199977723	199977724	rs2821357	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	1q32.1	NR5A2	rs2821357-?	NR	6E-6	(AA)	0.6519	[-0.50607-1.80987] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2110	chr1	199985367	199985368	rs2816938	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	1q32.1	NR5A2	rs2816938-A	0.23	3E-15	(EA)	1.21	[1.17-1.26]	Illumina [11381182] (imputed)	N
2110	chr1	199985367	199985368	rs2816938	27579533	Zhang M	2016-08-01	Oncotarget	Three new pancreatic cancer susceptibility signals identified on chromosomes 1q32.1, 5p15.33 and 8q24.21.	Pancreatic cancer	5,107 European ancestry cases, 8,845 European ancestry controls	6,076 cases, 7,555 controls	1q32.1	NR5A2	rs2816938-A	0.216	5E-15		1.2	[1.15-1.25]	Illumina [9132527] (imputed)	N
2110	chr1	200007431	200007432	rs3790844	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	1q32.1	NR5A2	rs3790844-A	0.77	8E-16	(EA)	1.2345679	[1.16-1.32]	Illumina [11381182] (imputed)	N
2110	chr1	200007431	200007432	rs3790844	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	1q32.1	NR5A2	rs3790844-?	NR	3E-6		1.2048193	[1.11-1.3]	Illumina [866891] (imputed)	N
2110	chr1	200007431	200007432	rs3790844	20101243	Petersen GM	2010-01-24	Nat Genet	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls	NA	1q32.1	NR5A2	rs3790844-T	0.76	2E-10		1.3	[1.19-1.41]	Illumina [551766]	N
2111	chr1	200031114	200031115	rs145972739	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	1q32.1		rs145972739-A	0.97	5E-8		0.083	[0.054-0.112] L decrease	Affymetrix [NR] (imputed)	N
2111	chr1	200033768	200033769	rs2821388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.1	NR	rs2821388-G	0.26735	7E-11		0.013536	[0.0095-0.0176] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2111	chr1	200033768	200033769	rs2821388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs2821388-G	0.24941	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
2111	chr1	200033768	200033769	rs2821388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.1	NR	rs2821388-G	0.267594	1E-12		0.014734	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2111	chr1	200033768	200033769	rs2821388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs2821388-G	0.249854	3E-12				Affymetrix, Illumina [24558453] (imputed)	N
2111	chr1	200033768	200033769	rs2821388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.1	NR	rs2821388-G	0.26753	2E-14		0.015934	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2111	chr1	200034968	200034969	rs2816916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.1	NR5A2	rs2816916-G	0.26608	1E-9		0.0152211785	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2111	chr1	200034968	200034969	rs2816916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.1	NR5A2	rs2816916-G	0.266086	7E-11		0.016233237	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2111	chr1	200036789	200036790	rs2821391	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q32.1	NR	rs2821391-A	0.71	3E-14		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
2111	chr1	200036789	200036790	rs2821391	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q32.1	NR	rs2821391-A	0.71	5E-8				Affymetrix [2446094] (imputed)	N
2111	chr1	200045014	200045014	rs150419964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q32.1		rs150419964-GTTTTCTTTTCTTTTC	NR	5E-13		0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2111	chr1	200048413	200048414	rs540928376	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1q32.1	NR	rs540928376-?	NR	2E-6		1.33815	[0.78-1.89] unit increase	NR [13958389] (imputed)	N
2111	chr1	200049301	200049302	rs6658424	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q32.1	NA	rs6658424-A	0.2843	1E-10		0.0125	[0.0088-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
2111	chr1	200049552	200049553	rs147358900	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.1	NR	rs147358900-?	NR	2E-6		4.765	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2111	chr1	200057502	200057503	rs12131072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q32.1		rs12131072-T	NR	4E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2111	chr1	200057502	200057503	rs12131072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q32.1	NR	rs12131072-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2111	chr1	200057502	200057503	rs12131072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.1		rs12131072-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2111	chr1	200069215	200069216	rs2816992	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	NR5A2	rs2816992-A	0.5879	7E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
2111	chr1	200069215	200069216	rs2816992	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	NR5A2	rs2816992-A	0.5879	3E-8		0.0131	[0.0084-0.0178] unit decrease	Affymetrix [19819130] (imputed)	N
2111	chr1	200069215	200069216	rs2816992	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.1	NR	rs2816992-?	NR	1E-7				Affymetrix [NR]	N
2111	chr1	200085713	200085714	rs2821332	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q32.1	NR5A2	rs2821332-A	0.47	8E-9		14.5	[9.58-19.42] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
2111	chr1	200085713	200085714	rs2821332	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q32.1	NR5A2	rs2821332-A	0.43	8E-8	(EA)	16.94	[10.77-23.11] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
2111	chr1	200095934	200095935	rs1986405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.1		rs1986405-?	NR	5E-15				NR [~ 8900000] (imputed)	N
2111	chr1	200099006	200099007	rs2816967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.1	NR	rs2816967-A	0.554815	6E-11		0.012301	[0.0086-0.016] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2111	chr1	200101432	200101433	rs2001814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q32.1		rs2001814-T	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2111	chr1	200101919	200101920	rs2816958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1q32.1	NR5A2	rs2816958-?		2E-13				Illumina [9578670] (imputed)	N
2111	chr1	200101919	200101920	rs2816958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q32.1	NR5A2	rs2816958-?		9E-8				Illumina [9725440] (imputed)	N
2111	chr1	200101919	200101920	rs2816958	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q32.1	NR5A2	rs2816958-?	NR	4E-15	(subset analysis)			Illumina [130052]	N
2111	chr1	200101919	200101920	rs2816958	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs2816958-G	0.89	1E-18	(EA)	1.1982042		Affymetrix, Illumina [~ 9000000] (imputed)	N
2111	chr1	200101919	200101920	rs2816958	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs2816958-G	0.89	4E-10	(EA)	1.1040689		Affymetrix, Illumina [~ 9000000] (imputed)	N
2111	chr1	200101919	200101920	rs2816958	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	1q32.1	intergenic	rs2816958-G	0.887	2E-17		1.23	[1.161-1.302]	Affymetrix, Illumina [1230000] (imputed)	N
2111	chr1	200107424	200107425	rs2737618	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	1q32.1	NR5A2	rs2737618-A	0.07	7E-6		0.311	[0.18-0.45] unit increase	Affymetrix [2366856] (imputed)	N
2111	chr1	200113002	200113003	rs7534666	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q32.1		rs7534666-A	NR	4E-7		5.0566087	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2111	chr1	200143441	200143442	rs1060061	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	1q32.1	NR5A2	rs1060061-T		4E-6	(AA)	0.06	[0.04-0.08] unit decrease	Illumina [at least 3251541] (imputed)	N
2111	chr1	200143843	200143844	rs2690034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs2690034-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2112	chr1	200197537	200197538	rs12128213	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs12128213-G	0.4713	2E-9		0.0256	[0.017-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2112	chr1	200197537	200197538	rs12128213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs12128213-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2112	chr1	200198945	200198946	rs10800682	33955455	Beck JJ	2021-05-06	Hum Mol Genet	Genetic Meta-Analysis of Twin Birth Weight Shows High Genetic Correlation with Singleton Birth Weight.	Birth weight	42,212 European ancestry individuals	NA	1q32.1	NR	rs10800682-?	NR	3E-7				Affymetrix, Illumina [7692335] (imputed)	N
2112	chr1	200233104	200233105	rs139094902	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	1q32.1	NR5A2	rs139094902-C	0.0101	9E-7		0.8948	[0.54-1.25] unit decrease	Illumina [up to 38043574] (imputed)	N
2112	chr1	200242631	200242632	rs61824877	29523524	Singh S	2018-03-09	J Am Heart Assoc	Genome Wide Association Study Identifies the HMGCS2 Locus to be Associated With Chlorthalidone Induced Glucose Increase in Hypertensive Patients.	Change in glucose in response to thiazide diuretic treatment in hypertension	135 African American individuals, 175 European ancestry individuals	140 African American individuals, 222 European ancestry individuals	1q32.1	C1orf98	rs61824877-A	0.0606	5E-8	(AA)	9.08	[NR] unit increase	Illumina [at least 2500000] (imputed)	N
2112	chr1	200251049	200251050	rs4915419	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q32.1	NR	rs4915419-A	0.59	4E-10		0.0116	[0.0079-0.0153] unit decrease	NR [NR]	N
2112	chr1	200256648	200256649	rs10919879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q32.1		rs10919879-C	NR	2E-23		0.0286	[0.023-0.034] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2112	chr1	200256648	200256649	rs10919879	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q32.1	LINC00862	rs10919879-G	0.154154	6E-27		0.00752267	[0.0061-0.0089] unit decrease	Affymetrix [13995440] (imputed)	N
2112	chr1	200259094	200259095	rs12727980	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	1q32.1	NR5A2, LINC00862	rs12727980-C	0.423	2E-8		0.00957	[0.0062-0.0129] unit increase	Affymetrix [11709857] (imputed)	N
2112	chr1	200261013	200261014	rs10919882	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q32.1	NR5A2, LINC00862	rs10919882-?		3E-9		0.026	[0.017-0.035] unit decrease	Illumina [31500000] (imputed)	N
2112	chr1	200261013	200261014	rs10919882	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	1q32.1	NR5A2, LINC00862	rs10919882-?	NR	2E-10		0.02599	[0.018-0.034] unit increase novel	Illumina [6108953] (imputed)	N
2112	chr1	200262409	200262410	rs12029351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1q32.1		rs12029351-C	0.440205	8E-12		0.0238613	[0.017-0.031] unit increase	Illumina [13476165] (imputed)	N
2112	chr1	200265150	200265151	rs183661447	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1q32.1	RP11-532L16.3	rs183661447-A	0.99220819	3E-8				Affymetrix, Illumina [NR] (imputed)	N
2112	chr1	200265617	200265618	rs7540115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.1	NR	rs7540115-C	0.8189420000000001	6E-12		0.00687906	[0.0048-0.009] unit increase	Affymetrix [16582909] (imputed)	N
2112	chr1	200265617	200265618	rs7540115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q32.1	NR	rs7540115-C	0.8187409999999999	3E-11		0.00959907	[0.0067-0.0125] unit increase	Affymetrix [16582621] (imputed)	N
2112	chr1	200265617	200265618	rs7540115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.1	NR	rs7540115-C	0.8189420000000001	4E-9		0.00677993	[0.0044-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
2112	chr1	200265617	200265618	rs7540115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q32.1	NR	rs7540115-C	0.8187409999999999	1E-9		0.00936579	[0.0063-0.0125] unit increase	Affymetrix [16582614] (imputed)	N
2112	chr1	200266502	200266503	rs6678676	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.1	NR	rs6678676-C	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2112	chr1	200266677	200266677	rs550899198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q32.1	NR	rs550899198-TG	NR	3E-9		0.0195	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2112	chr1	200269133	200269134	rs940400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q32.1	NR	rs940400-C	NR	2E-9		0.0221	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
2112	chr1	200271082	200271085	rs142941013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q32.1		rs142941013-G	NR	1E-16		0.0246	[0.019-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
2112	chr1	200271102	200271103	rs6682695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q32.1		rs6682695-C	NR	4E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2112	chr1	200271407	200271408	rs819636	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q32.1	C1orf98	rs819636-C	0.33	2E-8		0.38	[0.24-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2112	chr1	200271407	200271408	rs819636	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q32.1	C1orf98	rs819636-C	0.3269	2E-8		0.3993	[0.26-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2112	chr1	200271407	200271408	rs819636	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1q32.1	LINC00862	rs819636-T	NR	1E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
2112	chr1	200277221	200277221	rs5780018	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q32.1	NR	rs5780018-GA	NR	4E-10		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2113	chr1	200289967	200289968	rs12136498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	RP11-532L16.3	rs12136498-G	0.622311	4E-9		0.0128743	[0.0086-0.0171] unit increase	Affymetrix [93095623] (imputed)	N
2113	chr1	200293247	200293248	rs10733062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q32.1		rs10733062-T	0.717709	7E-12		0.016832966	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2113	chr1	200294112	200294113	rs6676472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q32.1	NR	rs6676472-T	0.712029	2E-11		0.014303	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2113	chr1	200304554	200304556	rs60388083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q32.1		rs60388083-T	NR	9E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2113	chr1	200304554	200304556	rs60388083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q32.1	NR	rs60388083-T	NR	4E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2113	chr1	200304876	200304877	rs200639793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs200639793-A	0.705586	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
2113	chr1	200311909	200311910	rs2225986	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q32.1	LINC00862	rs2225986-A	0.3812	2E-15		7.963	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
2113	chr1	200313659	200313659	rs11411654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.1		rs11411654-CA	NR	2E-8		0.0143	[0.0092-0.0194] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2113	chr1	200313659	200313659	rs11411654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.1		rs11411654-CA	NR	2E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2113	chr1	200315531	200315532	rs10919908	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1q32.1	NR	rs10919908-?	NR	3E-11		0.138962	[0.098-0.18] unit increase	NR [13958389] (imputed)	N
2113	chr1	200315531	200315532	rs10919908	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	1q32.1	NR	rs10919908-A	0.3655	7E-12		0.0507	[0.036-0.065] unit decrease	Illumina [~ 10600000] (imputed)	N
2113	chr1	200323143	200323144	rs2790126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs2790126-C	0.722099	6E-14				Affymetrix, Illumina [23114412] (imputed)	N
2113	chr1	200335574	200335575	rs2808508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q32.1		rs2808508-G	NR	2E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2113	chr1	200335574	200335575	rs2808508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.1		rs2808508-G	NR	2E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2113	chr1	200336074	200336075	rs2808510	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q32.1	NR	rs2808510-C		2E-16		0.09	[0.07-0.11] unit increase	NR [NR]	N
2113	chr1	200336074	200336075	rs2808510	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	1q32.1	NR5A2, ZNF281	rs2808510-?	NR	3E-17		1.065	[1.049-1.081]	Illumina [13762925] (imputed)	N
2113	chr1	200342045	200342046	rs6677545	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	1q32.1	NR	rs6677545-?	NR	4E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
2113	chr1	200343080	200343081	rs2808514	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q32.1	PTPRC, NR5A2, ZNF281, KIF14, DDX59, CAMSAP2, GPR25, KIF21B	rs2808514-?		1E-52				Affymetrix, Illumina [NR] (imputed)	N
2113	chr1	200356262	200356263	rs11299048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q32.1		rs11299048-C	0.755758	2E-10		0.016789917	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2113	chr1	200361913	200361914	rs2808519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q32.1	NR	rs2808519-T	0.737582	2E-13		0.016109	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2113	chr1	200366027	200366028	rs73077222	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q32.1	ZNF281	rs73077222-T	NR	3E-6		0.14759292	[0.08-0.216] unit decrease	Illumina [> 6200000] (imputed)	N
2113	chr1	200369757	200369758	rs2808474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q32.1	NR	rs2808474-C	0.223022	3E-8		0.0139384	[0.009-0.0189] unit decrease	NR [NR]	N
2113	chr1	200383086	200383087	rs4915203	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q32.1	NR	rs4915203-?	NR	2E-6		0.0869117	[0.051-0.122] unit decrease	NR [13958389] (imputed)	N
2114	chr1	200451422	200451422	rs34049751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q32.1		rs34049751-TA	NR	4E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2114	chr1	200453319	200453320	rs4506486	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q32.1	NR	rs4506486-T	0.6019	4E-11		0.001539	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
2114	chr1	200456423	200456424	rs10919946	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	1q32.1	ZNF281, KIF14	rs10919946-A	0.061207	9E-6		0.598386	[0.33-0.86] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2114	chr1	200475257	200475258	rs78374240	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1q32.1	RP11-121P12.1	rs78374240-T	0.14	2E-6		1.14	[0.67-1.61] g/day increase	Affymetrix [10353649] (imputed)	N
2115	chr1	200548744	200548745	rs10800713	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Tandem gait	2,946 individuals	NA	1q32.1	KIF14	rs10800713-A	0.73	3E-7	(Sum sidestep distance)	2.431	[1.51-3.36] unit decrease	Illumina [6200000] (imputed)	N
2115	chr1	200550560	200550561	rs116506593	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KIF14	rs116506593-?	NR	1E-8		1.74798	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2115	chr1	200611236	200611237	rs74497921	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gemmatimonadaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1q32.1		rs74497921-C	0.0587443	4E-8		0.0524619	[0.034-0.071] unit decrease	Illumina [7980478] (imputed)	N
2115	chr1	200614438	200614439	rs148910549	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DDX59	rs148910549-?	NR	2E-9		1.47678	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2115	chr1	200646072	200646073	rs6700559	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q32.1	DDX59, LOC101929224	rs6700559-T	0.4715	2E-8		0.0284	[0.019-0.038] unit decrease	Affymetrix [at least 7947838] (imputed)	N
2115	chr1	200646072	200646073	rs6700559	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q32.1	DDX59, LOC101929224	rs6700559-T	0.4718	4E-9		0.0325	[0.022-0.043] unit decrease	NR [8041861] (imputed)	N
2115	chr1	200647212	200647213	rs150045871	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL445483.1	rs150045871-?	NR	2E-8		1.74219	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2115	chr1	200656390	200656391	rs9427710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	CAMSAP1L1	rs9427710-?	NR	1E-6	(CE 14:0)	0.34095663	[0.2-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
2115	chr1	200669179	200669180	rs6427847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q32.1		rs6427847-?	NR	3E-20				NR [~ 8900000] (imputed)	N
2116	chr1	200672205	200672206	rs61109704	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	1q32.1	NR	rs61109704-C	0.053041	4E-6		0.1823332	[0.11-0.26] unit decrease	Illumina [9469131] (imputed)	N
2116	chr1	200672698	200672699	rs7535122	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.1		rs7535122-?	NR	8E-15		0.0155022	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
2116	chr1	200672698	200672699	rs7535122	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q32.1	LOC101929224	rs7535122-A	0.391032	2E-8	(women)	0.0273616	[0.018-0.037] unit increase	NR [17166351] (imputed)	N
2116	chr1	200672698	200672699	rs7535122	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q32.1	LOC101929224	rs7535122-A	0.390297	1E-12		0.0232761	[0.017-0.03] unit increase	NR [17166351] (imputed)	N
2116	chr1	200672905	200672906	rs7512898	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	1q32.1	NR	rs7512898-?	0.41	5E-6	(PR segment)			Affymetrix [338049]	N
2116	chr1	200674224	200674225	rs115456075	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	1q32.1	NR	rs115456075-?		3E-6		8.51	[3.45-20.95]	Illumina [NR] (imputed)	N
2116	chr1	200682087	200682088	rs12748718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	1q32.1		rs12748718-T	NR	2E-10		0.0837	[0.058-0.109] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2116	chr1	200707532	200707533	rs58397787	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q32.1	CAMSAP2	rs58397787-C	0.80004	1E-18		0.020205	[0.016-0.025] unit increase	NR [13737936] (imputed)	N
2116	chr1	200708068	200708068	rs537301220	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.1		rs537301220-?	NR	2E-20		0.0227597	[0.018-0.028] unit increase	Affymetrix [20259828] (imputed)	N
2116	chr1	200786283	200786285	rs149694488	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	1q32.1	NR	rs149694488-C		5E-6		0.1383	[0.079-0.198] SD units increase	NR [10700000] (imputed)	N
2117	chr1	200811764	200811765	rs12742404	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	1q32.1	CAMSAP2	rs12742404-G	0.121153	4E-10		0.087284885	[0.06-0.115] unit increase	Affymetrix [7288503] (imputed)	N
2117	chr1	200814958	200814959	rs6691977	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	1q32.1	IL10	rs6691977-C	0.19	4E-8		1.13		Illumina [135870]	N
2117	chr1	200826768	200826769	rs2292096	22116939	Guo Y	2011-11-24	Hum Mol Genet	Two-stage genome-wide association study identifies variants in CAMSAP1L1 as susceptibility loci for epilepsy in Chinese.	Epilepsy	504 Han Chinese ancestry cases, 2,947 Han Chinese ancestry controls	583 Han Chinese ancestry cases, 497 Han Chinese ancestry controls	1q32.1	CAMSAP1L1	rs2292096-?	NR	1E-8		1.59	[NR]	Illumina [461024]	N
2117	chr1	200840466	200840467	rs12756886	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1q32.1	GPR25	rs12756886-C	0.118	3E-9		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2117	chr1	200840466	200840467	rs12756886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1q32.1		rs12756886-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2117	chr1	200851367	200851370	rs199712218	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q32.1	NR	rs199712218-?	NR	8E-6		0.054	[0.03-0.078] unit decrease	Illumina [at least 560000] (imputed)	N
2117	chr1	200874228	200874229	rs35730213	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs35730213-?	NR	8E-45	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2117	chr1	200874326	200874327	rs374827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.1	Intergenic	rs374827-T	0.5019	5E-8	(MTAG)	0.009	[0.0057-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2117	chr1	200874727	200874728	rs55838263	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	1q32.1		rs55838263-?	NR	4E-15		0.067	NR unit decrease	NR [5896510] (imputed)	N
2117	chr1	200874727	200874728	rs55838263	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	1q32.1	C1orf106	rs55838263-A	0.71	4E-19		1.13		Illumina [161311]	N
2117	chr1	200875241	200875242	rs12132349	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	1q32.1	INAVA	rs12132349-?		8E-9		1.1243252		Illumina [252970]	N
2117	chr1	200875241	200875242	rs12132349	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	1q32.1	KIF21B, C1orf106	rs12132349-T	0.76	2E-7		1.31	[1.19-1.44]	Illumina [at least 106525] (imputed)	N
2117	chr1	200875896	200875897	rs59655222	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q32.1	C1orf106	rs59655222-T	NR	6E-21		1.1049	NR	Affymetrix, Illumina [8278136] (imputed)	N
2117	chr1	200875896	200875897	rs59655222	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	1q32.1	C1orf106	rs59655222-?	NR	3E-8		0.1137	unit increase	Illumina [up to 143074]	N
2117	chr1	200877561	200877562	rs7554511	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1q32.1	C1orf106, KIF21B, CACNA1S	rs7554511-?		4E-16				Illumina [9578670] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q32.1	C1orf106, KIF21B, CACNA1S	rs7554511-?		1E-21				Illumina [9725440] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q32.1	C1orf106, KIF21B, CACNA1S	rs7554511-?		1E-10				Illumina [9560910] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs7554511-C	0.72	7E-31	(EA)	1.1808171		Affymetrix, Illumina [~ 9000000] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs7554511-C	0.72	2E-27	(EA)	1.1616178	[1.13-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	1q32.1	KIF21B	rs7554511-?	NR	5E-6	(Southern European)	1.41	[1.22-1.64]	Illumina [546271]	N
2117	chr1	200877561	200877562	rs7554511	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q32.1	KIF21B	rs7554511-C	0.725	1E-32		1.164	[1.128-1.202]	Affymetrix, Illumina [1230000] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q32.1	C1orf106	rs7554511-C	0.72	2E-13		1.19	[1.14-1.25]	Affymetrix, Illumina [~ 1100000] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1q32.1	C1orf106, KIF21B	rs7554511-C	0.726	2E-7		1.14	[1.08-1.19]	Affymetrix, Illumina [953241] (imputed)	N
2117	chr1	200877561	200877562	rs7554511	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1q32.1	KIF21B	rs7554511-?	NR	1E-6				Affymetrix [NR]	N
2117	chr1	200877849	200877850	rs41299637	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q32.1	GPR25, KIF21B	rs41299637-T	0.715	7E-16	(EA)	1.2		Illumina [128935]	N
2117	chr1	200877849	200877850	rs41299637	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q32.1	GPR25, KIF21B	rs41299637-T	0.715	2E-15		1.19		Illumina [128935]	N
2117	chr1	200878726	200878727	rs12131796	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q32.1	C1orf106	rs12131796-?	NR	5E-41	(subset analysis)			Illumina [130052]	N
2117	chr1	200879301	200879302	rs4915463	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q32.1	NR	rs4915463-A	0.378885	5E-10		0.0197031	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
2117	chr1	200881391	200881392	rs10800746	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	1q32.1	C1orf106	rs10800746-C	0.695	3E-8		1.12		Illumina [139553]	N
2117	chr1	200881594	200881595	rs7522462	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	1q32.1	C1orf106, KIF21B	rs7522462-G	NR	2E-9		1.11	[1.1-1.13]	Illumina [465434]	N
2117	chr1	200881939	200881940	rs296522	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q32.1	NR	rs296522-C	0.8192	3E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [7072771] (imputed)	N
2117	chr1	200884984	200884985	rs905634	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1q32.1	NR	rs905634-C	0.69	8E-13		1.14	[NR]	NR [8546065] (imputed)	N
2117	chr1	200892136	200892137	rs296547	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	1q32.1	intergenic	rs296547-?	0.64	4E-9		1.12	[1.09-1.16]	Illumina [292387]	N
2117	chr1	200902606	200902607	rs11583546	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q32.1	MROH3P	rs11583546-A	0.298	3E-9		0.02312652	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2117	chr1	200905506	200905507	rs4915466	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1q32.1	MROH3P	rs4915466-T		1E-6		0.0706	[0.042-0.099] unit increase	Illumina [NR]	N
2117	chr1	200908901	200908902	rs7364440	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	1q32.1		rs7364440-?	NR	8E-6				Illumina [7401356] (imputed)	N
2117	chr1	200929143	200929144	rs169850	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.1		rs169850-T	0.32	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
2117	chr1	200931747	200931747	rs113307843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1q32.1		rs113307843-AC	NR	2E-9		0.1381	[0.093-0.184] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
2118	chr1	200935865	200935866	rs11584383	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q32.1	KIF21B, C1orf81, CACNA1S	rs11584383-C	NR	2E-7		1.11	[NR]	Illumina [266047]	N
2118	chr1	200935865	200935866	rs11584383	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	1q32.1	intergenic	rs11584383-T	0.70	1E-11		1.18	[NR]	Affymetrix, Illumina [635547] (imputed)	N
2118	chr1	200951306	200951307	rs72749142	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.1	NR	rs72749142-G	NR	3E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
2118	chr1	200960306	200960307	rs2297909	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	1q32.1	NR	rs2297909-A		2E-6	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
2118	chr1	200960306	200960307	rs2297909	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	1q32.1	KIF21B	rs2297909-G	0.68	5E-12				Illumina [2223620] (imputed)	N
2118	chr1	200961882	200961883	rs59682551	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q32.1	C1orf106, KIF21B, CACNA1S	rs59682551-?		3E-9				NR [7428630] (imputed)	N
2118	chr1	200971048	200971049	rs35304341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q32.1	NR	rs35304341-A	NR	6E-16		0.0338	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
2118	chr1	200971048	200971049	rs35304341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q32.1	NR	rs35304341-A	NR	7E-17		0.035	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
2118	chr1	200971048	200971049	rs35304341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q32.1	NR	rs35304341-A	NR	1E-9		0.0254	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2118	chr1	200974887	200974888	rs11584527	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	1q32.1	NR	rs11584527-A	NR	3E-6		0.04493	[0.026-0.064] unit decrease	Illumina [~ 540852]	N
2118	chr1	200984479	200984480	rs12122721	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	1q32.1		rs12122721-A	NR	7E-7		0.113419	[0.069-0.158] unit decrease	NR [2787054] (imputed)	N
2118	chr1	201006660	201006661	rs6673267	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q32.1	NR	rs6673267-?	NR	2E-19				Illumina [at least 7383741] (imputed)	N
2118	chr1	201008795	201008796	rs200126670	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	1q32.1	KIF21B	rs200126670-?	NR	3E-7				Illumina [7401356] (imputed)	N
2118	chr1	201008795	201008796	rs200126670	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	1q32.1	KIF21B	rs200126670-?	NR	8E-6				Illumina [7401356] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q32.1		rs3850625-A	NR	1E-27		0.0304	[0.025-0.036] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q32.1		rs3850625-A	NR	2E-14		0.0253	[0.019-0.032] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q32.1	CACNA1S	rs3850625-G	0.88	1E-10		6.47	z-score increase	Affymetrix [4314223] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.1	CACNA1S	rs3850625-A	0.1182	3E-18		0.0252	[0.02-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	1q32.1	CACNA1S	rs3850625-A	0.118	9E-14		0.03	[0.022-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	1q32.1	CACNA1S	rs3850625-A	0.118	9E-6		0.02	[0.012-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	1q32.1	CACNA1S	rs3850625-A	NR	1E-8		0.0177	[0.012-0.024] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	1q32.1	CACNA1S	rs3850625-A	0.1187	1E-8		0.0177182	[0.012-0.024] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q32.1	CACNA1S	rs3850625-A	0.1159	2E-22		0.0046	[0.0036-0.0056] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q32.1	CACNA1S	rs3850625-A	0.1197	3E-22		0.0048	[0.0036-0.006] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q32.1	CACNA1S	rs3850625-G	0.931	2E-8		5.66	NR z score decrease	Illumina [26237160] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1q32.1	CACNA1S	rs3850625-G	0.926	3E-9		0.665	[0.34-0.99] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.1		rs3850625-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		1q32.1	CACNA1S	rs3850625-A	NR	2E-8		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
2118	chr1	201016295	201016296	rs3850625	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	1q32.1	CACNA1S	rs3850625-A	0.12	7E-11		0.0083	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.1		rs55734382-T	NR	4E-12		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	1q32.1		rs55734382-T	NR	2E-9		0.140216	[0.094-0.186] unit decrease	NR [5054572] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q32.1	CACNA1S	rs55734382-T	0.333307	3E-11		0.015644763	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.1	CACNA1S	rs55734382-T	0.333327	2E-16		0.019259496	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs55734382-T	0.279712	6E-17				Affymetrix, Illumina [23472807] (imputed)	N
2118	chr1	201019058	201019059	rs55734382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.1	NR	rs55734382-T	0.331332	1E-18		0.01777	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2118	chr1	201044343	201044344	rs3767510	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	1q32.1		rs3767510-?	NR	4E-6	(MLM)	0.1748027	[0.1-0.25] unit decrease	Illumina [~ 9000000] (imputed)	N
2118	chr1	201054196	201054197	rs41267505	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q32.1	CACNA1S	rs41267505-T	0.1594921117428	2E-6	(O_Selenomonadales_RNT)	0.141479	[0.083-0.2] unit decrease	Illumina [7711310] (imputed)	N
2119	chr1	201080173	201080174	rs184837031	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	1q32.1	CACNA1S	rs184837031-A		8E-8		0.531	[NR] unit decrease	Illumina [24111857] (imputed)	N
2119	chr1	201080297	201080298	rs4498834	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis	1,944 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	151 European ancestry cases,  6,019 European ancestry controls, 150 European and other ancestry cases, 2,696 European and other ancestry controls	1q32.1	ASCL5, CACNA1S	rs4498834-C	0.43	2E-16		1.4	[1.29-1.52]	Illumina [NR] (imputed)	N
2119	chr1	201081942	201081943	rs2281845	21931568	Geller F	2011-09-08	PLoS Genet	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 individuals	1q32.1	CACNA1S	rs2281845-T	0.38	8E-17		0.103	[0.08-0.12] unit decrease	Illumina [521741]	N
2119	chr1	201138427	201138428	rs1122396	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1q32.1	TMEM9, IGFN1	rs1122396-G	0.49	2E-6	(Japanese)	1.3157895		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
2119	chr1	201154031	201154032	rs78196549	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q32.1	NR	rs78196549-?		5E-6				Illumina [4322238] (imputed)	N
2119	chr1	201167121	201167122	rs146662784	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q32.1	IGFN1	rs146662784-T	0.0021	9E-6		0.5971	[0.33-0.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2119	chr1	201170570	201170571	rs10157719	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	TMEM9	rs10157719-?	NR	5E-6	(UDP glucose; UDP galactose)	0.18918909	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
2120	chr1	201262431	201262432	rs860554	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	1q32.1	PKP1	rs860554-?	0.05	5E-8				Affymetrix [253903]	N
2120	chr1	201280944	201280945	rs1772855	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	1q32.1	PKP1	rs1772855-C	0.359175	8E-10		1.0281278	NR	Affymetrix [~ 9600000] (imputed)	N
2121	chr1	201328094	201328095	rs2275864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.1	NR	rs2275864-A	0.01742	7E-9	(ALDH16A1)	0.02782	NR unit increase	Illumina [1671387] (imputed)	N
2121	chr1	201328704	201328705	rs45576635	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	1q32.1	TNNT2	rs45576635-A	0.0323	9E-6	(Ordinal II)	1.1179	[0.63-1.61] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2121	chr1	201331553	201331554	rs1104859	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	TNNT2	rs1104859-T	0.288548	5E-9	(28 ms)	0.0355824	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2121	chr1	201331553	201331554	rs1104859	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	TNNT2	rs1104859-T	0.288548	3E-8	(30 ms)	0.0340885	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2121	chr1	201331553	201331554	rs1104859	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	TNNT2	rs1104859-T	0.288548	2E-8	(26 ms)	0.0350522	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2121	chr1	201332019	201332020	rs1892027	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		1q32.1	NR	rs1892027-C	0.70552	3E-7		0.059207	[0.037-0.082] unit increase	Affymetrix [14134301] (imputed)	N
2121	chr1	201332019	201332020	rs1892027	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		1q32.1	NR	rs1892027-C	0.70552	5E-8		0.063036	[0.04-0.086] unit increase	Affymetrix [14134301] (imputed)	N
2121	chr1	201332019	201332020	rs1892027	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 2)	18,096 European individuals		1q32.1	NR	rs1892027-C	0.70552	6E-6		0.052406	unit increase	Affymetrix [14134301] (imputed)	N
2121	chr1	201345169	201345170	rs192437322	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q32.1	TNNT2, LAD1	rs192437322-A	0.0013	4E-6		1.0815	[0.62-1.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2121	chr1	201345486	201345487	rs12564445	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	1q32.1	TNNT2	rs12564445-A	NR	5E-8	(Dichotomous variable)	2.33	[1.72-3.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2121	chr1	201355652	201355653	rs11805972	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	1q32.1	LAD1	rs11805972-T	NR	2E-17		8.485	z-score increase	Illumina [632375]	N
2121	chr1	201422200	201422201	rs10920205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs10920205-?	NR	4E-13				NR [~ 8900000] (imputed)	N
2121	chr1	201428552	201428553	rs927899	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	1q32.1	NR	rs927899-C	NR	9E-6		0.7423	NR unit increase	Illumina [4533042] (imputed)	N
2121	chr1	201429084	201429085	rs6427908	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q32.1	Intergenic	rs6427908-T	NR	3E-6	(women)	0.0288527	[0.017-0.041] unit decrease	Illumina [13520550] (imputed)	N
2121	chr1	201437729	201437730	rs192314256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	668 European ancestry cases, 481,244 European ancestry controls, 1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	1q32.1		rs192314256-C	NR	9E-19		1.8259	[1.42-2.23] unit increase	Affymetrix, Illumina [25844469] (imputed)	N
2121	chr1	201437729	201437730	rs192314256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	1q32.1		rs192314256-C	0.015182115	9E-19		1.8259165	[1.42-2.23] unit increase	Illumina [13429980] (imputed)	N
2121	chr1	201437729	201437730	rs192314256	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Keloid	812 Japanese ancestry cases, 211,641 Japanese ancestry controls	NA	1q32.1		rs192314256-C	0.015208128	3E-20		9.556178	[5.910913495-15.44947879]	Illumina [8919992] (imputed)	N
2121	chr1	201437831	201437832	rs35383942	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	1q32.1		rs35383942-T	NR	6E-7		1.1191941	NR	Affymetrix [7846216] (imputed)	N
2121	chr1	201437831	201437832	rs35383942	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q32.1	NR	rs35383942-T	0.0630945	2E-15		0.0497534	[0.037-0.062] unit decrease	NR [19129689] (imputed)	N
2121	chr1	201437831	201437832	rs35383942	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q32.1	PHLDA3	rs35383942-T	0.06	4E-13	(EA)	1.12	[1.08-1.17] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2123	chr1	201594664	201594665	rs2068824	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	1q32.1	NAV1	rs2068824-C		6E-6				Illumina [944512] (imputed)	N
2123	chr1	201597946	201597947	rs1022463	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q32.1	NAV1	rs1022463-T	0.807882	6E-12		0.016016	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
2123	chr1	201597946	201597947	rs1022463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q32.1		rs1022463-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2123	chr1	201597946	201597947	rs1022463	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.1		rs1022463-?	NR	6E-13		0.0183781	[0.013-0.024] unit increase	Affymetrix [20259828] (imputed)	N
2123	chr1	201598914	201598915	rs11584075	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1q32.1	NAV1	rs11584075-A	0.92	2E-10		0.02	unit increase	Affymetrix [8928767] (imputed)	N
2123	chr1	201619720	201619721	rs556637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.1		rs556637-T	0.07	2E-15		7.96	z score increase	Affymetrix [9061022] (imputed)	N
2123	chr1	201619720	201619721	rs556637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q32.1		rs556637-T	0.07	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
2123	chr1	201619720	201619721	rs556637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q32.1		rs556637-T	0.07	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
2123	chr1	201619720	201619721	rs556637	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q32.1	NR	rs556637-T	0.0743	3E-8				NR [9056863] (imputed)	N
2123	chr1	201619720	201619721	rs556637	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q32.1	NR	rs556637-T	0.0743	2E-13				NR [9056863] (imputed)	N
2123	chr1	201630954	201630955	rs586688	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	NAV1	rs586688-A	0.092	8E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2123	chr1	201640476	201640477	rs12743006	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NAV1	rs12743006-?	NR	2E-8	(female)	1.52437	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2123	chr1	201689397	201689398	rs732814	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	1q32.1	NR	rs732814-?	0.2	5E-6		0.58	[0.46-0.73]	Illumina [5934489] (imputed)	N
2123	chr1	201711584	201711585	rs114078858	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	1q32.1	NAV1	rs114078858-C	0.98	9E-9		0.09	[0.051-0.129] unit decrease	NR [NR]	N
2124	chr1	201721929	201721930	rs12037669	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q32.1	NAV1	rs12037669-T		1E-10		0.22	unit increase	Affymetrix [at least 2696785] (imputed)	N
2124	chr1	201722101	201722102	rs239980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs239980-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2124	chr1	201724511	201724512	rs10920250	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.1	NAV1	rs10920250-A	0.4061	5E-10		0.1723	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
2124	chr1	201735912	201735913	rs882624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q32.1		rs882624-T	NR	7E-14		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2124	chr1	201746767	201746768	rs682112	32964493	Palmer MR	2020-09-22	Genet Epidemiol	Loci identified by a genome-wide association study of carotid artery stenosis in the eMERGE network.	Carotid artery stenosis	934 British ancestry cases, 408,027 British ancestry controls	NA	1q32.1	NR	rs682112-A	0.4	1E-8		0.27	[0.18-0.36] unit increase	Affymetrix [17981292] (imputed)	N
2124	chr1	201748123	201748124	rs665770	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	1q32.1	NAV1	rs665770-A	0.398	1E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
2124	chr1	201752266	201752267	rs528789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q32.1		rs528789-A	NR	6E-14		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
2124	chr1	201752428	201752429	rs527725	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.1	NAV1	rs527725-C	0.622	3E-14		0.1975	[0.15-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
2124	chr1	201763498	201763499	rs567185	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q32.1	NR	rs567185-C	0.3656	2E-14		0.037	[0.028-0.046] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2124	chr1	201765093	201765094	rs623025	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q32.1	NR	rs623025-C	0.7448	3E-8		1.0384216	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2124	chr1	201771325	201771326	rs12119128	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q32.1	NAV1	rs12119128-G	0.699195	3E-8		0.0116627	[0.0075-0.0158] unit increase	Affymetrix [NR] (imputed)	N
2124	chr1	201783681	201783682	rs2820290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q32.1		rs2820290-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	4E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	8E-7	(men)	0.0261	[0.016-0.036] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	1E-9		0.022	[0.015-0.029] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	6E-6	(women)	0.0189	[0.011-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	5E-11		0.0209	[0.015-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q32.1	NAV1	rs2820292-A	0.4644	1E-7	(men)	0.0244	[0.015-0.034] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	1q32.1	NAV1	rs2820292-C	NR	4E-6	(additive model)	0.019	[0.011-0.027] unit increase	NR [9288881] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	1q32.1	NR	rs2820292-A	0.443345967509007	8E-11		0.01753016	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q32.1	NAV1	rs2820292-C	0.556	2E-8	(EA, men)	0.023	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2124	chr1	201784286	201784287	rs2820292	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q32.1	NAV1	rs2820292-C	0.555	5E-6	(EA, women)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2124	chr1	201784286	201784287	rs2820292	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q32.1	NAV1	rs2820292-C	0.555	2E-10	(EA)	0.02	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2124	chr1	201784286	201784287	rs2820292	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q32.1	NAV1	rs2820292-C	0.547	5E-10		0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2124	chr1	201784286	201784287	rs2820292	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q32.1	NAV1	rs2820292-A	0.4472	7E-7	(EA, men)	0.0232	[0.014-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2124	chr1	201784286	201784287	rs2820292	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q32.1	NAV1	rs2820292-A	0.4472	2E-8	(EA)	0.0189	[0.012-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2124	chr1	201787939	201787940	rs2678210	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q32.1	NR	rs2678210-T	NR	7E-10		6.167	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
2124	chr1	201787939	201787940	rs2678210	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.1	NR	rs2678210-?	NR	1E-7		5.291	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2124	chr1	201793439	201793440	rs2644128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q32.1		rs2644128-G	NR	7E-14		0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2124	chr1	201793439	201793440	rs2644128	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q32.1	NR	rs2644128-C	0.45	1E-12		0.013	[0.0094-0.0166] unit decrease	NR [NR]	N
2124	chr1	201793439	201793440	rs2644128	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1q32.1	NAV1	rs2644128-G	0.549876	3E-12		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
2124	chr1	201793439	201793440	rs2644128	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	1q32.1	NAV1	rs2644128-G	0.549876	5E-11		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
2124	chr1	201797534	201797535	rs2644109	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q32.1	NR	rs2644109-?	NR	7E-8		0.12076	[0.077-0.165] unit increase	Affymetrix [7794483] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1q32.1		rs2678204-G	0.34	7E-7		0.01	mmol/L increase	NR [NR] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q32.1		rs2678204-G	0.34	4E-17				NR [NR] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1q32.1		rs2678204-G	0.34	2E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q32.1		rs2678204-G	0.34	3E-18		0.014	% increase	NR [NR] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	1q32.1		rs2678204-G	0.34	1E-6		0.01	U/L increase	NR [NR] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q32.1	IPO9	rs2678204-T	0.659718	3E-25		0.0150162	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
2124	chr1	201800510	201800511	rs2678204	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	1q32.1	IPO9	rs2678204-G	0.34198299	2E-16		0.269358	[0.21-0.33] unit increase	Affymetrix [9463307] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.1	NR	rs2678204-?	NR	5E-32				Affymetrix [~ 8270000] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1q32.1	NR	rs2678204-G	0.3414	1E-18		0.023058537	[0.018-0.028] unit increase	Affymetrix [10549349] (imputed)	N
2124	chr1	201800510	201800511	rs2678204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.1		rs2678204-?	NR	1E-32				NR [~ 8900000] (imputed)	N
2124	chr1	201800867	201800868	rs2820295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q32.1		rs2820295-A	NR	1E-28		0.0248	[0.02-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2124	chr1	201800867	201800868	rs2820295	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q32.1	NA	rs2820295-A	0.3266	6E-39		0.0235	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
2124	chr1	201800867	201800868	rs2820295	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q32.1	NA	rs2820295-A	0.3266	6E-39		0.0235	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
2124	chr1	201801010	201801011	rs2494114	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q32.1	NR	rs2494114-C	NR	3E-20		0.027	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2124	chr1	201802051	201802052	rs2644111	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q32.1	NR	rs2644111-?	NR	4E-9	(male)	0.21731	[0.15-0.29] unit increase	Affymetrix [7794483] (imputed)	N
2124	chr1	201802051	201802052	rs2644111	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q32.1	NR	rs2644111-?	NR	1E-12		0.16548	[0.12-0.21] unit increase	Affymetrix [7794483] (imputed)	N
2124	chr1	201826339	201826340	rs2172935	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	1q32.1	NA	rs2172935-T	0.3232	6E-39		0.0235	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
2124	chr1	201834943	201834944	rs2820309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q32.1		rs2820309-G	NR	4E-8		0.0569	[0.037-0.077] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
2124	chr1	201834943	201834944	rs2820309	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1q32.1	IPO9	rs2820309-G	0.320548	4E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
2124	chr1	201845574	201845575	rs8024	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.1		rs8024-A	0.3294	1E-14		0.0115	[0.0086-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2124	chr1	201849925	201849926	rs41304257	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs41304257-G	0.2441	8E-12		0.0318	[0.023-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2124	chr1	201850056	201850057	rs1517810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q32.1	Intergenic	rs1517810-T	0.6666	3E-10	(MTAG)	0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2125	chr1	201856255	201856256	rs2644135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q32.1		rs2644135-G	NR	9E-25		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2125	chr1	201856255	201856256	rs2644135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.1	Intergenic	rs2644135-C	0.3404	1E-13	(MTAG)	0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2125	chr1	201856255	201856256	rs2644135	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.1	Intergenic	rs2644135-C	0.3436	3E-17	(MTAG)	0.0117	[0.009-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2125	chr1	201856520	201856521	rs10920270	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	1q32.1	SHISA4	rs10920270-C	0.2972	1E-13		0.018551813	[0.013-0.024] unit increase	NR [9417325] (imputed)	N
2125	chr1	201859212	201859213	rs61824384	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (low self-esteem) (ordinal trait)	148,752 European ancestry individuals	NA	1q32.1	SHISA4	rs61824384-A	0.636	4E-8		0.012	[0.0081-0.0159] unit increase	NR [9413637] (imputed)	N
2125	chr1	201860625	201860626	rs2250377	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	1q32.1	SHISA4	rs2250377-A		7E-40		0.0121	[0.01-0.014] unit increase	Affymetrix [13304133] (imputed)	N
2125	chr1	201861015	201861016	rs2279681	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (sum-score)	148,752 European ancestry individuals	NA	1q32.1	SHISA4, LMOD1	rs2279681-C	0.657	6E-11		0.093	[0.066-0.120] unit increase	NR [9413637] (imputed)	N
2125	chr1	201861015	201861016	rs2279681	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (binary sum-score)	148,752 European ancestry individuals	NA	1q32.1	SHISA4, LMOD1	rs2279681-C	0.657	9E-9		0.023	[0.015-0.031] unit increase	NR [9413637] (imputed)	N
2125	chr1	201861015	201861016	rs2279681	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (fatigue) (ordinal trait)	148,752 European ancestry individuals	NA	1q32.1	SHISA4	rs2279681-C	0.657	2E-9		0.019	[0.013-0.025] unit increase	NR [9413637] (imputed)	N
2125	chr1	201869256	201869257	rs2820312	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	1q32.1	LMOD1, SHISA4, NAV1	rs2820312-A	0.3212	5E-36		0.0235	[0.02-0.027] unit increase	Illumina [246328]	N
2125	chr1	201870220	201870221	rs2820313	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	1q32.1	LMOD1, IPO9, NAV1, SHISA4	rs2820313-G	NR	2E-9		1.031		NR [14661600] (imputed)	N
2125	chr1	201870220	201870221	rs2820313	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	1q32.1	NR	rs2820313-G	0.3389	2E-9		1.067	[1.05-1.09]	Affymetrix, Illumina [10858887] (imputed)	N
2125	chr1	201870220	201870221	rs2820313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q32.1		rs2820313-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2125	chr1	201870630	201870630	rs533788169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q32.1		rs533788169-CA	NR	5E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q32.1	LMOD1	rs2820315-?	NR	7E-10		0.0351716	[0.024-0.046] unit increase	Illumina [4804024] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q32.1	LMOD1	rs2820315-T	0.3012	1E-10		0.0359	[0.025-0.047] unit increase	Affymetrix [at least 7947838] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q32.1	LMOD1	rs2820315-T	0.3	3E-11		0.0405	[0.029-0.052] unit increase	NR [8041861] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q32.1	LMOD1	rs2820315-T	0.3	3E-12		0.02	[0.014-0.026] unit increase	Illumina [6108953] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3073	7E-9	(EA)	0.0257	[0.017-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3008	4E-8		0.0238	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-?	NR	6E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-?	NR	4E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-?	NR	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3073	5E-9	(EA)	0.0237	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3073	1E-6	(EA, women)	0.0253	[0.015-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3008	5E-6	(women)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201872263	201872264	rs2820315	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q32.1	LMOD1, NAV1	rs2820315-T	0.3008	1E-8		0.0224	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2125	chr1	201884374	201884376	rs749128918	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q32.1	NR	rs749128918-C	0.435895	1E-8		0.0559146	[0.037-0.075] unit decrease	Affymetrix [21375087] (imputed)	N
2125	chr1	201884646	201884647	rs4309038	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	LMOD1	rs4309038-C	0.4346	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
2125	chr1	201884646	201884647	rs4309038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs4309038-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2125	chr1	201884951	201884952	rs2819348	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	1q32.1	ATP2B4	rs2819348-C	0.318	3E-6		0.078	[0.045-0.111] cup size increase	Illumina [7422970] (imputed)	N
2125	chr1	201886769	201886770	rs34091558	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1q32.1	LMOD1	rs34091558-?	NR	3E-8		0.072	[0.098-0.047] unit decrease	Illumina [12039487] (imputed)	N
2125	chr1	201887720	201887721	rs17432675	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q32.1	NR	rs17432675-T	NR	6E-9		5.809	z score increase	Affymetrix [10847151] (imputed)	N
2125	chr1	201887720	201887721	rs17432675	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	1q32.1	NR	rs17432675-C	NR	4E-8		0.01373	[0.0088-0.0186] unit decrease	Affymetrix [10847151] (imputed)	N
2125	chr1	201887720	201887721	rs17432675	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	1q32.1	NAV1	rs17432675-T	0.326381	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
2125	chr1	201895663	201895664	rs72744832	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.1	LMOD1	rs72744832-T	0.9165	2E-18		0.0296	[0.023-0.036] unit increase	Affymetrix [18391927] (imputed)	N
2125	chr1	201907873	201907874	rs2820299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q32.1		rs2820299-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2125	chr1	201950948	201950949	rs11810017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNPEP	5,365 Icelandic ancestry individuals	NA	1q32.1		rs11810017-C	0.357	5E-59		0.308602	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
2125	chr1	201952573	201952574	rs4950806	21862451	Benyamin B	2011-08-23	Hum Mol Genet	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adult individuals	1,260 European ancestry adult individuals, 652 European ancestry adolescent individuals	1q32.1	RNPEP	rs4950806-T	0.40	9E-16		0.14	[0.10-0.18] SD decrease	Illumina [2383238] (imputed)	N
2125	chr1	201952597	201952598	rs56768485	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.1	NR	rs56768485-A	0.3118	1E-8	(RNPEP)	0.02618	NR unit decrease	Illumina [1671387] (imputed)	N
2125	chr1	201952597	201952598	rs56768485	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1q32.1	RNPEP	rs56768485-A	0.28	1E-56	(X - 10457)	0.355	[0.31-0.4] unit increase	Illumina [7750367] (imputed)	N
2125	chr1	201958633	201958634	rs147777734	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNPEP	5,365 Icelandic ancestry individuals	NA	1q32.1		rs147777734-T	0.01989	9E-18		0.57567	[0.44-0.71] unit decrease	Illumina [7506463] (imputed)	N
2125	chr1	201964058	201964059	rs144177292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q32.1	RNPEP	rs144177292-T	0.99	1E-6	(AA)	0.178	NR unit increase	Illumina [NR] (imputed)	N
2125	chr1	201964058	201964059	rs144177292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q32.1	RNPEP	rs144177292-T	0.99	2E-6	(AA)	0.721	NR unit increase	Illumina [NR] (imputed)	N
2125	chr1	201965316	201965317	rs74710742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNPEP	5,365 Icelandic ancestry individuals	NA	1q32.1		rs74710742-T	0.01697	6E-21		0.678601	[0.54-0.82] unit decrease	Illumina [7506463] (imputed)	N
2125	chr1	201965854	201965855	rs59698324	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	RNPEP	rs59698324-C	0.725	4E-42	(RNPEP, 12386_11_3)	0.37111855	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
2125	chr1	201972888	201972889	rs4630172	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNPEP	5,365 Icelandic ancestry individuals	NA	1q32.1		rs4630172-T	0.2862	2E-69		0.356306	[0.32-0.4] unit decrease	Illumina [7506463] (imputed)	N
2125	chr1	201979454	201979455	rs3806357	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q32.1	ELF3	rs3806357-A	0.251	4E-9		1.106	[1.07-1.14]	Illumina [11270530] (imputed)	N
2126	chr1	202003986	202003987	rs6694034	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,367 Icelandic ancestry individuals	NA	1q32.1		rs6694034-A	0.4877	2E-16		0.149703	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2126	chr1	202012251	202012252	rs9427716	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	1q32.1		rs9427716-T	0.46	2E-24		0.0952	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2126	chr1	202012251	202012252	rs9427716	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.1	NR	rs9427716-?	NR	4E-6		4.6	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2126	chr1	202055954	202055955	rs10800813	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	1q32.1	GPR37L1	rs10800813-C	0.626856	4E-8		0.021818	[0.014-0.03] unit increase	Affymetrix [641018] (imputed)	N
2126	chr1	202061407	202061408	rs61823671	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	1q32.1		rs61823671-C	0.026492	7E-7		1.9187671	NR	Affymetrix [7846216] (imputed)	N
2126	chr1	202093685	202093686	rs12122642	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q32.1	GPR37L1	rs12122642-G	0.322753825444728	7E-6		0.0025826	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
2126	chr1	202103801	202103802	rs4342901	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.1	NR	rs4342901-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2126	chr1	202103801	202103802	rs4342901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.1		rs4342901-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2126	chr1	202111778	202111779	rs4950771	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGMN	5,367 Icelandic ancestry individuals	NA	1q32.1		rs4950771-T	0.04889	2E-19		0.398131	[0.31-0.48] unit decrease	Illumina [7506463] (imputed)	N
2127	chr1	202116237	202116238	rs9077	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q32.1	NA	rs9077-A	0.2713	3E-13		0.0136	[0.0099-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
2127	chr1	202129195	202129196	rs73085637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.1	PTPN7	rs73085637-C	0.129336	5E-10		0.023192514	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr1	202129204	202129205	rs147176673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	PTPN7	rs147176673-A	0.015256	9E-19		0.09000428	[0.07-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
2127	chr1	202129204	202129205	rs147176673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.1	PTPN7	rs147176673-A	0.015289	3E-12		0.069506854	[0.05-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
2127	chr1	202129204	202129205	rs147176673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.1	PTPN7	rs147176673-A	0.015214	6E-10		0.06242377	[0.043-0.082] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr1	202129204	202129205	rs147176673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs147176673-G	0.9861	3E-13				Affymetrix, Illumina [24588908] (imputed)	N
2127	chr1	202129204	202129205	rs147176673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.1	NR	rs147176673-G	0.985643	2E-14		0.066774	[0.05-0.084] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2127	chr1	202143511	202143512	rs12401678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q32.1		rs12401678-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2127	chr1	202148041	202148042	rs10920352	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q32.1	PTPRVP	rs10920352-T	0.577282	6E-10		0.0114881	[0.0079-0.0151] unit decrease	NR [13737936] (imputed)	N
2127	chr1	202149438	202149439	rs4511180	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	1q32.1	PTPRV	rs4511180-A	0.268	8E-7	(African American)	4.178	[3.62-4.74]	Illumina [21693469] (imputed)	N
2127	chr1	202160969	202160970	rs3100127	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	1q32.1	LGR6	rs3100127-A	0.25	1E-6	(African American)	4.31	[3.73-4.89]	Illumina [21693469] (imputed)	N
2127	chr1	202165813	202165814	rs2993426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.1		rs2993426-?	NR	3E-9		0.0117281	[0.0076-0.0159] unit increase	Affymetrix [20259828] (imputed)	N
2127	chr1	202171043	202171044	rs3010095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q32.1		rs3010095-G	NR	7E-10		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2127	chr1	202175150	202175155	rs111467838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q32.1	NR	rs111467838-T	NR	2E-9		0.0155	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2127	chr1	202179041	202179042	rs17489300	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1q32.1	LGR6	rs17489300-?	0.6	9E-10		1.1111112	[1.08-1.15]	Illumina [10909381] (imputed)	N
2127	chr1	202179041	202179042	rs17489300	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	1q32.1	LGR6	rs17489300-?	0.61	2E-8		1.0309278	[0.99-1.08] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
2127	chr1	202187175	202187176	rs6678914	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1q32.1	LGR6	rs6678914-G	0.59	3E-12		1.0869565	[1.06-1.11]	Illumina [~ 11500000] (imputed)	N
2127	chr1	202187175	202187176	rs6678914	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1q32.1	LGR6, UBE2T, PTPN7	rs6678914-?	0.59	1E-8		1.1	[1.06-1.13]	Illumina [NR]	N
2127	chr1	202202237	202202238	rs4266947	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	1q32.1	LGR6	rs4266947-T	NR	7E-6		4.62	[2.37-9.01]	Illumina [NR]	N
2127	chr1	202210614	202210615	rs76330411	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.1		rs76330411-?	NR	2E-9		0.015975	[0.01-0.022] unit increase	Affymetrix [20259828] (imputed)	N
2127	chr1	202223656	202223657	rs115723332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.1		rs115723332-A	NR	8E-13		0.0609	[0.044-0.078] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2127	chr1	202232156	202232157	rs116047540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	LGR6	rs116047540-A	0.018975	2E-11		0.05621443	[0.04-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
2128	chr1	202255324	202255325	rs77234324	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine	53 Taiwanese ancestry cases, 180 Taiwanese ancestry controls	NA	1q32.1	LGR6	rs77234324-A	0.01667	3E-7		8.978	NR	Affymetrix [710525]	N
2128	chr1	202267653	202267654	rs788824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q32.1		rs788824-T	NR	4E-13		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2128	chr1	202289605	202289606	rs788790	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	1q32.1	LGR6	rs788790-C	0.5	9E-9		1.13	[1.09-1.18]	Illumina [up to 7441713] (imputed)	N
2128	chr1	202322112	202322113	rs6658708	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q32.1	NR	rs6658708-T	0.527	6E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
2129	chr1	202381530	202381531	rs2696961	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q32.1	NA	rs2696961-C		6E-15		0.0222537	[0.017-0.028] unit increase	Illumina [13288253] (imputed)	N
2129	chr1	202391742	202391743	rs12739262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	PPP1R12B	rs12739262-A	0.262	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2129	chr1	202432001	202432002	rs1819043	26763874	Ryu D	2016-01-14	J Hum Genet	Genome-wide association study reveals sex-specific selection signals against autosomal nucleotide variants.	Sex ratio	4,183 Korean ancestry male individuals, 4,659 Korean ancestry female individuals	935 Korean ancestry individuals	1q32.1	PPP1R12B	rs1819043-?	NR	3E-46		1.72	[NR]	Affymetrix [1400289] (imputed)	N
2129	chr1	202469722	202469723	rs12734338	24778558	Domarkiene I	2013-12-01	Balkan J Med Genet	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	1q32.1	PPP1R12B	rs12734338-G	NR	3E-7		29.0	[3.95-212.9]	Illumina [646445]	N
2129	chr1	202469722	202469723	rs12734338	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	1q32.1	UBE2T, PPP1R12B, SYT2	rs12734338-C		3E-7				Illumina [944512] (imputed)	N
2129	chr1	202474773	202474774	rs12741415	32824824	Diaz-Pena R	2020-08-18	J Pers Med	Amerindian Ancestry Influences Genetic Susceptibility to Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	1q32.1	PPP1R12B	rs12741415-A	NR	3E-7		3.01	NR	Illumina [754159] (imputed)	N
2130	chr1	202560657	202560658	rs4950780	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q32.1		rs4950780-A	0.36	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
2130	chr1	202560657	202560658	rs4950780	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q32.1	NR	rs4950780-A	0.3765	5E-12				NR [9056863] (imputed)	N
2130	chr1	202577410	202577411	rs7415468	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q32.1	NR	rs7415468-T	0.3962	1E-8				NR [9056863] (imputed)	N
2130	chr1	202637303	202637304	rs141860749	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	1q32.1	SYT2	rs141860749-A	0.01	4E-7		8.9	[NR]	Affymetrix [4893794] (imputed)	N
2132	chr1	202806405	202806406	rs6688903	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	1q32.1	NR	rs6688903-A	NR	5E-6		0.02375	[0.014-0.034] unit decrease	Illumina [541493]	N
2132	chr1	202812653	202812654	rs11576909	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1q32.1	MGAT4EP, LOC148709	rs11576909-?	NR	2E-38		0.885	[0.75-1.02] unit decrease	Affymetrix [11100000] (imputed)	N
2133	chr1	202909973	202909974	rs7539542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	ADIPOR1	rs7539542-C	0.682895	4E-19		0.021631455	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2133	chr1	202909973	202909974	rs7539542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs7539542-G	0.329275	1E-21				Affymetrix, Illumina [17210439] (imputed)	N
2133	chr1	202909973	202909974	rs7539542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q32.1	NR	rs7539542-G	0.317228	2E-23		0.020728	[0.017-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2133	chr1	202909973	202909974	rs7539542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.1	ADIPOR1	rs7539542-C	0.6796	5E-12		0.02731183	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2133	chr1	203026213	203026214	rs10753933	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q32.1	PPFIA4	rs10753933-T	0.448	1E-19		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
2133	chr1	203026213	203026214	rs10753933	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q32.1	PPFIA4	rs10753933-T	0.48	6E-25		1.08	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2133	chr1	203026590	203026591	rs17461925	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	1q32.1	PPFIA4	rs17461925-A	0.797	9E-11		1.077	[1.053-1.102]	Illumina [5018049] (imputed)	N
2133	chr1	203028710	203028711	rs4590732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q32.1		rs4590732-G	0.303903794	9E-12		0.17080374	[0.12-0.22] unit decrease	Illumina [13427194] (imputed)	N
2133	chr1	203028710	203028711	rs4590732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	1q32.1		rs4590732-G	NR	4E-23		0.0944	[0.076-0.113] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
2133	chr1	203028710	203028711	rs4590732	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q32.1	PPFIA4	rs4590732-C	0.45	1E-18	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2134	chr1	203034905	203034906	rs3737883	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	1q32.1	PPFIA4	rs3737883-A	0.68	2E-9		1.48	[1.31-1.68]	Affymetrix [642422]	N
2134	chr1	203034954	203034955	rs3737882	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	1q32.1		rs3737882-?	NR	3E-9		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [10661418] (imputed)	N
2134	chr1	203034954	203034955	rs3737882	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	1q32.1		rs3737882-?	NR	4E-7		0.06	[0.038-0.082] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2134	chr1	203039601	203039602	rs871298	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	1q32.1		rs871298-G	0.308526232	8E-17		0.90203387	[0.880435197-0.92416233]	Illumina [8919992] (imputed)	N
2134	chr1	203041456	203041457	rs4950914	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	1q32.1		rs4950914-?	NR	4E-6		0.26	[0.15-0.37] unit decrease	Affymetrix [NR] (imputed)	N
2134	chr1	203054650	203054651	rs61745017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs61745017-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2134	chr1	203080148	203080149	rs72739513	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	1q32.1	NR	rs72739513-A	0.04	9E-9		0.72	[0.47-0.97] unit increase	Affymetrix [9231066] (imputed)	N
2134	chr1	203080148	203080149	rs72739513	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	1q32.1	NR	rs72739513-A	0.04	9E-9		0.72	[0.47-0.97] unit increase	Affymetrix [9231066] (imputed)	N
2134	chr1	203090975	203090976	rs7555556	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q32.1	ADORA1	rs7555556-C	0.67	7E-16				NR [> 9500000] (imputed)	N
2134	chr1	203091273	203091274	rs903361	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	1q32.1	ADORA1	rs903361-A	0.658908	1E-11		1.0465835	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
2134	chr1	203091273	203091274	rs903361	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	1q32.1	ADORA1	rs903361-G	0.3406	4E-12				Affymetrix [15688218] (imputed)	N
2134	chr1	203091273	203091274	rs903361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q32.1		rs903361-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2134	chr1	203092058	203092059	rs7538512	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q32.1	ADORA1	rs7538512-A	0.669611	1E-11		1.0441473	[1.03120308041067-1.05725391787758]	NR [9572556] (imputed)	N
2134	chr1	203093200	203093201	rs12023876	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	1q32.1	NR	rs12023876-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
2134	chr1	203093200	203093201	rs12023876	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	1q32.1	ADORA1, PPFIA4	rs12023876-G	0.668	1E-9		1.102	[1.068-1.137]	Affymetrix [10894596] (imputed)	N
2134	chr1	203093200	203093201	rs12023876	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q32.1	MYOG, ADORA1	rs12023876-?	NR	5E-21		1.074	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
2134	chr1	203093200	203093201	rs12023876	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	1q32.1	MYOG, ADORA1	rs12023876-G	NR	9E-11		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
2134	chr1	203094405	203094406	rs1874142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.1	ADORA1	rs1874142-A	NR	1E-8		0.0165472	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
2134	chr1	203094405	203094406	rs1874142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.1	ADORA1	rs1874142-A	NR	6E-9		0.0168023	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
2134	chr1	203094405	203094406	rs1874142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q32.1	NR	rs1874142-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
2134	chr1	203094405	203094406	rs1874142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.1		rs1874142-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2134	chr1	203098274	203098275	rs2228079	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	1q32.1	ADORA1, MYBPH, MYOG, CHI3L1, PPFIA4, CHIT1	rs2228079-T	0.66774	8E-12		1.0470546	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
2134	chr1	203100503	203100504	rs6683383	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	1q32.1	ADORA1	rs6683383-?	NR	1E-8		1.062	[1.040-1.084]	Illumina [13747813] (imputed)	N
2134	chr1	203107205	203107206	rs61025910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	1q32.1		rs61025910-C	0.039343	4E-8		0.0646054	[0.042-0.088] unit decrease	Illumina [13470073] (imputed)	N
2134	chr1	203107205	203107206	rs61025910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q32.1		rs61025910-C	NR	4E-8		0.0646	[0.042-0.088] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2134	chr1	203109800	203109801	rs33996239	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q32.1	ADORA1	rs33996239-T	0.0609	2E-10		0.3538	[0.25-0.46] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2134	chr1	203123801	203123802	rs12119124	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1q32.1	NR	rs12119124-?	NR	5E-7		4.32	[3.43-5.45]	Illumina [539000] (imputed)	N
2134	chr1	203145711	203145712	rs12724763	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	CHI3L1	rs12724763-?	NR	1E-6	(isoleucine)	0.3927345	[0.23-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2134	chr1	203145992	203145993	rs12743504	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	CHI3L1	rs12743504-?	NR	2E-6	(phenylalanine)	0.43941638	[0.26-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2134	chr1	203147288	203147289	rs884209	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs884209-A	0.519	1E-673	(Chitinase-3-like protein 1, CHI3L1.11104.13.3)	1.01	[0.97-1.05] unit decrease	Affymetrix [10572788] (imputed)	N
2134	chr1	203147609	203147610	rs903357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NR	rs903357-G	0.438125	2E-426	(CHI3L1, 11104_13_3)	0.93411297	[0.9-0.97] unit increase	Illumina [> 1000000] (imputed)	N
2134	chr1	203147609	203147610	rs903357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NR	rs903357-G	0.438125	1E-34	(CHIT1, 10460_1_3)	0.30369514	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2134	chr1	203154093	203154094	rs10920578	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	CHI3L1	rs10920578-T	0.523	7E-746	(Chitinase-3-like protein 1, CHI3L1.11104.13.3)	1.03	[0.99-1.07] unit decrease	Affymetrix [10572788] (imputed)	N
2134	chr1	203155881	203155882	rs4950928	18403759	Ober C	2008-04-09	N Engl J Med	Effect of variation in CHI3L1 on serum YKL-40 level, risk of asthma, and lung function.	YKL-40 levels	632 Hutterite individuals	443 European ancestry cases, 491 European ancestry controls, 206 European ancestry individuals	1q32.1	CHI3L1	rs4950928-G	0.29	1E-13		0.3	[NR] ng/ml decrease	Affymetrix [290325]	N
2134	chr1	203155997	203155998	rs10399805	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs10399805-A	0.128	7E-168	(Chitinase-3-like protein 1, CHI3L1.11104.13.3)	0.95	[0.89-1.01] unit increase	Affymetrix [10572788] (imputed)	N
2134	chr1	203157872	203157873	rs946261	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs946261-T	0.633	2E-120	(Chitinase-3-like protein 1, CHI3L1.11104.13.3)	0.56	[0.52-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
2135	chr1	203163366	203163367	rs7541061	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	YKL 40 plasma levels	400 French ancestry individuals	NA	1q32.1		rs7541061-C	NR	2E-10		0.212	[0.15-0.28] ng/mL decrease	Illumina [5201092] (imputed)	N
2135	chr1	203164074	203164075	rs4950931	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Chitinase-3-like protein 1 levels	21,758 European ancestry individuals	9,173 individuals	1q32.1		rs4950931-A	0.79	5E-1391		0.6756	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2135	chr1	203164188	203164189	rs115384187	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1q32.1	MYBPH, ADORA1, CHI3L1, CHIT1	rs115384187-A	0.0125	9E-6		6.4585	[5.64-7.28]	Illumina [8809853] (imputed)	N
2135	chr1	203168473	203168474	rs2153101	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	1q32.1	NR	rs2153101-?	NR	3E-41	(CHI3L1)	0.748832	[0.64-0.86] unit increase	Illumina [11901634] (imputed)	N
2135	chr1	203168473	203168474	rs2153101	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1q32.1	CHI3L1	rs2153101-A	0.21	2E-236		0.62	unit decrease	Illumina [5270624] (imputed)	N
2135	chr1	203170624	203170625	rs80220799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.1	NR	rs80220799-G	0.01394	7E-9	(CLU)	0.05832	NR unit decrease	Illumina [1671387] (imputed)	N
2135	chr1	203170624	203170625	rs80220799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.1	NR	rs80220799-G	0.01394	3E-9	(EIF2B1)	0.02206	NR unit increase	Illumina [1671387] (imputed)	N
2135	chr1	203174669	203174670	rs2486950	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	NR	rs2486950-?	NR	8E-111	(EA, Chitotriosidase-1)			Affymetrix [509946]	N
2135	chr1	203181361	203181362	rs12141375	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	CHIT1	rs12141375-A	0.2038153	9E-108	(Chitotriosidase-1)	0.9899	[0.91-1.07] unit decrease	Affymetrix [509946]	N
2135	chr1	203181361	203181362	rs12141375	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q32.1	NR	rs12141375-C	NR	6E-31	(Chitotriosidase-1)			Illumina [514227]	N
2135	chr1	203182291	203182292	rs4950937	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	CHIT1	rs4950937-A	0.2730924	1E-24	(Chitotriosidase-1)	0.4856	[0.4-0.58] unit increase	Affymetrix [509946]	N
2135	chr1	203184765	203184766	rs872583	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NR	rs872583-T	0.80296875	7E-21	(CHI3L1, 11104_13_3)	0.2869486	[0.23-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2135	chr1	203184765	203184766	rs872583	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NR	rs872583-T	0.80296875	6E-205	(CHIT1, 3600_2_3)	0.89485055	[0.84-0.95] unit increase	Illumina [> 1000000] (imputed)	N
2135	chr1	203184765	203184766	rs872583	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NR	rs872583-T	0.80296875	1E-313	(CHIT1, 10460_1_3)	1.0719463	[1.02-1.12] unit increase	Illumina [> 1000000] (imputed)	N
2135	chr1	203184765	203184766	rs872583	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	CHIT1	rs872583-C	0.202	1E-432	(Chitotriosidase-1, CHIT1.3600.2.3)	1.1	[1.06-1.14] unit decrease	Affymetrix [10572788] (imputed)	N
2135	chr1	203199080	203199081	rs73068228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHIT1	5,368 Icelandic ancestry individuals	NA	1q32.1		rs73068228-G	0.05728	8E-156		1.02953	[0.95-1.11] unit increase	Illumina [7506463] (imputed)	N
2135	chr1	203199080	203199081	rs73068228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHIT1	5,359 Icelandic ancestry individuals	NA	1q32.1		rs73068228-G	0.05728	5E-92		0.802678	[0.73-0.88] unit increase	Illumina [7506463] (imputed)	N
2135	chr1	203199080	203199081	rs73068228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs73068228-G	0.071	4E-67	(Chitotriosidase-1, CHIT1.3600.2.3)	0.8	[0.7-0.9] unit increase	Affymetrix [10572788] (imputed)	N
2135	chr1	203230452	203230453	rs181499059	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q32.1	Intergenic	rs181499059-T	NR	4E-6		0.0596366	[0.034-0.085] unit decrease	Illumina [13519193] (imputed)	N
2135	chr1	203240859	203240860	rs144290781	32433515	Meyers JL	2020-05-20	Mol Psychiatry	A genome-wide association study of interhemispheric theta EEG coherence: implications for neural connectivity and alcohol use behavior.	Theta EEG coherence	6,644 European ancestry individuals, 2,166 African American individuals	NA	1q32.1	NR	rs144290781-?		3E-8	(interhemispheric high theta coherence at P3-O1-P4-O2)			Illumina [6832792] (imputed)	N
2135	chr1	203255765	203255766	rs55768624	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q32.1	LINC01353	rs55768624-T	0.9532	7E-6		0.1119	[0.063-0.161] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2135	chr1	203260499	203260500	rs4543864	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q32.1	LINC01353	rs4543864-T	NR	3E-6		1.0533	NR	Affymetrix, Illumina [8278136] (imputed)	N
2135	chr1	203270942	203270943	rs55709800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.1	LINC01136	rs55709800-T	0.090071	6E-11		0.025807466	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203270942	203270943	rs55709800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.1	LINC01136	rs55709800-T	0.090068	8E-14		0.02937934	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203270942	203270943	rs55709800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q32.1	LINC01136	rs55709800-T	0.090099	3E-12		0.0256783	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203275406	203275407	rs17534048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534048-G	0.413689	8E-45		0.050226185	[0.043-0.057] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203275406	203275407	rs17534048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534048-G	0.413697	7E-42		0.04898615	[0.042-0.056] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203275406	203275407	rs17534048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534048-G	0.413627	1E-16		0.0168462	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203276245	203276246	rs375229041	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	1q32.1		rs375229041-?	NR	8E-10		0.413593	[0.27-0.55] unit increase	NR [9800000] (imputed)	N
2135	chr1	203277404	203277405	rs538260231	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.1	NR	rs538260231-?	NR	5E-6		0.007651	[0.0044-0.0109] unit increase	Affymetrix [805426] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.1		rs17534202-C	NR	2E-38		0.0271	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.1		rs17534202-C	NR	4E-37		0.0266	[0.022-0.031] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q32.1		rs17534202-G	0.464	6E-42		0.15	[0.13-0.17] % increase	Affymetrix [NR] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.535003	4E-44		0.030896332	[0.027-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.534902	1E-16		0.018291306	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.53502	4E-158		0.0949135	[0.088-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.534922	4E-167		0.098619305	[0.092-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.534945	6E-63		0.0350751	[0.031-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.534978	1E-41		0.02987494	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q32.1	BTG2	rs17534202-C	0.534975	4E-19		0.019997073	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs17534202-C	0.465547	4E-72				Affymetrix, Illumina [24246363] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.1	NR	rs17534202-C	0.531262	4E-72		0.033154	[0.03-0.037] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs17534202-C	0.463524	5E-51				Affymetrix, Illumina [20825802] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q32.1	NR	rs17534202-C	0.534342	7E-49		0.028469	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.1		rs17534202-?	NR	3E-46				NR [~ 8900000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs17534202-?	NR	1E-16				NR [~ 8900000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs17534202-?	NR	4E-48				NR [~ 8900000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	NR	5E-10		0.0240075	[0.016-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	0.5348	6E-14		0.02671776	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	0.5347	3E-12		0.02493359	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	0.5347	3E-27		0.0383943	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	0.5346	4E-24		0.0360883	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2135	chr1	203281174	203281175	rs17534202	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q32.1	BTG2	rs17534202-C	0.5346	2E-12		0.02518549	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2136	chr1	203310846	203310847	rs17177486	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	1q32.1	NR	rs17177486-?	NR	9E-6		0.2187	[0.12-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
2136	chr1	203320407	203320408	rs4971252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FMOD	5,365 Icelandic ancestry individuals	NA	1q32.1		rs4971252-G	0.08186	4E-13		0.245683	[0.18-0.31] unit decrease	Illumina [7506463] (imputed)	N
2136	chr1	203321413	203321414	rs4971253	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	FMOD	rs4971253-G	0.92109375	3E-8	(FMOD, 6367_66_3)	0.24965082	[0.16-0.34] unit increase	Illumina [> 1000000] (imputed)	N
2136	chr1	203336807	203336808	rs10800919	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	1q32.1	PRELP, FMOD	rs10800919-C	0.371	4E-7				Affymetrix [432921]	N
2136	chr1	203337411	203337412	rs2185645	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	1q32.1	NR	rs2185645-A	0.3398	1E-6		0.153	[0.091-0.215] unit increase	Illumina [10677593] (imputed)	N
2136	chr1	203356068	203356069	rs4291556	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	1q32.1	NR	rs4291556-C	0.05089	4E-6		0.3182	[0.18-0.45] unit increase	Illumina [10677593] (imputed)	N
2136	chr1	203371988	203371989	rs10920636	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KERA	5,351 Icelandic ancestry individuals	NA	1q32.1		rs10920636-G	0.4976	7E-30		0.201509	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
2136	chr1	203372484	203372485	rs1539143	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	FMOD	rs1539143-G	0.173	1E-6	(Trunk fat mass )	0.04	[NR] kg increase	Illumina [899892]	N
2137	chr1	203435305	203435306	rs72743610	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	PRELP	rs72743610-T	0.011	8E-20	(Prolow-density lipoprotein receptor-related protein 1, LRP1.10699.52.3)	1.09	[0.85-1.33] unit decrease	Affymetrix [10572788] (imputed)	N
2137	chr1	203442886	203442887	rs72743618	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSMD2	5,359 Icelandic ancestry individuals	NA	1q32.1		rs72743618-G	0.01176	7E-14		0.62334	[0.46-0.79] unit increase	Illumina [7506463] (imputed)	N
2137	chr1	203452408	203452409	rs41313926	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	PRELP	rs41313926-A	0.01	6E-22	(Potassium voltage-gated channel subfamily E regulatory beta subunit 5, KCNE5.8908.14.3)	1.17	[0.93-1.41] unit increase	Affymetrix [10572788] (imputed)	N
2137	chr1	203452408	203452409	rs41313926	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	PRELP	rs41313926-A	0.01	1E-91	(Ankyrin-2, ANK2.7624.19.3)	2.36	[2.12-2.6] unit increase	Affymetrix [10572788] (imputed)	N
2137	chr1	203485141	203485142	rs13303252	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA		NR	rs13303252-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
2137	chr1	203485141	203485142	rs13303252	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA		NA	rs13303252-T	0.1812	9E-10		0.0153	[0.01-0.02] unit increase	NR [~ 27400000] (imputed)	N
2137	chr1	203491149	203491150	rs4971239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q32.1		rs4971239-A	NR	1E-9		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2137	chr1	203491149	203491150	rs4971239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q32.1		rs4971239-A	NR	7E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2137	chr1	203491149	203491150	rs4971239	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q32.1	OPTC	rs4971239-G	0.830859	5E-10		0.0114876	[0.0079-0.0151] unit decrease	Affymetrix [12370749]	N
2137	chr1	203491149	203491150	rs4971239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.1		rs4971239-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2137	chr1	203492719	203492720	rs13303128	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	1q32.1	OPTC	rs13303128-C		9E-6		0.2833	unit increase	Illumina [5767231] (imputed)	N
2137	chr1	203496237	203496237	rs138544011	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	1q32.1	NR	rs138544011-CA		3E-6		0.3342	[0.19-0.47] unit increase	Illumina [12764477] (imputed)	N
2137	chr1	203499072	203499073	rs7518410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	OPTC	rs7518410-G	NR	3E-8		0.0293058	[0.019-0.04] unit increase	Affymetrix [321788] (imputed)	N
2137	chr1	203499072	203499073	rs7518410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	OPTC	rs7518410-G	NR	3E-8		0.0281106	[0.018-0.038] unit increase	Affymetrix [321016] (imputed)	N
2137	chr1	203510047	203510048	rs6691427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.1	OPTC	rs6691427-C	NR	2E-11		0.018823	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
2137	chr1	203510047	203510048	rs6691427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	OPTC	rs6691427-C	NR	6E-31		0.0337781	[0.028-0.04] unit increase	Affymetrix [321788] (imputed)	N
2137	chr1	203510047	203510048	rs6691427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q32.1	NR	rs6691427-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2137	chr1	203510047	203510048	rs6691427	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q32.1	NR	rs6691427-C	0.4902	6E-9		0.0115	[0.0076-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
2137	chr1	203511491	203511492	rs36043408	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q32.1	OPTC	rs36043408-G	0.497847	1E-10		0.0128509	[0.009-0.0167] unit increase	Affymetrix [NR] (imputed)	N
2137	chr1	203511491	203511492	rs36043408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.1		rs36043408-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2137	chr1	203516074	203516075	rs6685593	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	1q32.1	OPTC	rs6685593-?	NR	6E-11				NR [5554549] (imputed)	N
2137	chr1	203516074	203516075	rs6685593	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	1q32.1	OPTC	rs6685593-?	NR	2E-12				NR [5554549] (imputed)	N
2137	chr1	203517291	203517292	rs2821226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.1	OPTC	rs2821226-A	NR	2E-11		0.0189237	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
2137	chr1	203518381	203518382	rs2821231	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q32.1	intergenic	rs2821231-T	0.4417	3E-9		0.0146	[0.0097-0.0195] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2137	chr1	203518455	203518456	rs2802770	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.1	NR	rs2802770-A	0.537347	6E-15		0.00660363	[0.005-0.0082] unit increase	Affymetrix [16582909] (imputed)	N
2137	chr1	203518455	203518456	rs2802770	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.1	NR	rs2802770-A	0.537347	6E-8		0.00520094	[0.0034-0.007] unit increase	Affymetrix [16582965] (imputed)	N
2137	chr1	203518872	203518873	rs13303359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	OPTC	rs13303359-A	NR	2E-27		0.0306687	[0.025-0.036] unit decrease	Affymetrix [321016] (imputed)	N
2137	chr1	203518872	203518873	rs13303359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q32.1	NR	rs13303359-C	0.527509	6E-12		0.00813453	[0.0057-0.0106] unit increase	Affymetrix [16585854] (imputed)	N
2137	chr1	203518872	203518873	rs13303359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q32.1	NR	rs13303359-C	0.527509	3E-7		0.0071643	[0.0044-0.01] unit increase	Affymetrix [16585866] (imputed)	N
2137	chr1	203519193	203519194	rs6695980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q32.1	NR	rs6695980-T	NR	3E-8		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
2137	chr1	203519193	203519194	rs6695980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q32.1	NR	rs6695980-T	0.471	5E-8	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
2137	chr1	203519193	203519194	rs6695980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q32.1	NR	rs6695980-T	NR	5E-6		0.016	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2137	chr1	203519647	203519648	rs17781552	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q32.1	intergenic	rs17781552-G	0.451743	5E-7	(females)	0.01083	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2137	chr1	203519647	203519648	rs17781552	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q32.1	intergenic	rs17781552-G	0.451743	1E-7	(females)	0.01103	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2137	chr1	203522908	203522909	rs17781558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	OPTC	rs17781558-G	NR	2E-14		0.0250521	[0.019-0.031] unit increase	Affymetrix [321788] (imputed)	N
2137	chr1	203522908	203522909	rs17781558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	OPTC	rs17781558-G	NR	2E-12		0.0222742	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
2137	chr1	203527811	203527812	rs2802774	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1q32.1		rs2802774-A	0.55	1E-7		0.01	mmol/L decrease	NR [NR] (imputed)	N
2137	chr1	203527811	203527812	rs2802774	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q32.1		rs2802774-A	0.55	7E-22				NR [NR] (imputed)	N
2137	chr1	203527811	203527812	rs2802774	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q32.1		rs2802774-A	0.55	4E-13		0.011	% increase	NR [NR] (imputed)	N
2137	chr1	203528029	203528030	rs28434579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	OPTC	rs28434579-C	NR	2E-15		0.0276396	[0.021-0.034] unit increase	Affymetrix [321788] (imputed)	N
2137	chr1	203528029	203528030	rs28434579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	OPTC	rs28434579-C	NR	6E-12		0.0230271	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
2137	chr1	203538485	203538486	rs2821217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs2821217-T	NR	9E-9		0.0180887	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
2137	chr1	203538485	203538486	rs2821217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs2821217-T	NR	4E-10		0.0189137	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
2137	chr1	203549389	203549390	rs7367791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs7367791-T	NR	3E-10		0.0184565	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
2137	chr1	203549389	203549390	rs7367791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs7367791-T	NR	2E-10		0.0178032	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
2138	chr1	203562732	203562733	rs76985528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs76985528-G	NR	2E-8		0.0215634	[0.014-0.029] unit decrease	Affymetrix [321788] (imputed)	N
2138	chr1	203562732	203562733	rs76985528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q32.1	ATP2B4	rs76985528-G	NR	7E-9		0.0214718	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
2138	chr1	203625650	203625651	rs6661843	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	1q32.1	ATP2B4	rs6661843-A	0.0131	2E-8		0.31	NR SD units increase	Illumina [21568490] (imputed)	N
2138	chr1	203649715	203649716	rs7514742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q32.1		rs7514742-A	NR	2E-38		0.0524	[0.045-0.06] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
2138	chr1	203649715	203649716	rs7514742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q32.1	ATP2B4	rs7514742-A	0.9022102	1E-15		0.030458454	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2138	chr1	203649877	203649878	rs12035565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.1	ATP2B4	rs12035565-T	0.902045	2E-16		0.03073374	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203649877	203649878	rs12035565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.1	ATP2B4	rs12035565-C	0.0980082	1E-9		0.022622908	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q32.1		rs10751450-T	NR	4E-8		0.0203	[0.013-0.028] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q32.1	NR	rs10751450-T	0.89945	2E-17		0.026026	[0.02-0.032] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs10751450-T	0.908101	3E-37				Affymetrix, Illumina [24332387] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.1	NR	rs10751450-T	0.90033	5E-11		0.0205	[0.014-0.027] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.1	NR	rs10751450-T	0.900337	6E-31		0.036482	[0.03-0.043] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs10751450-T	0.907266	5E-36				Affymetrix, Illumina [24653286] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.1	ATP2B4	rs10751450-T	0.9007	1E-14		0.04543469	[0.034-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
2138	chr1	203650944	203650945	rs10751450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1q32.1	ATP2B4	rs10751450-T	0.9008	5E-59		0.09352077	[0.082-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2138	chr1	203650977	203650978	rs10751451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs10751451-T	0.8947	3E-28				Affymetrix, Illumina [23472807] (imputed)	N
2138	chr1	203651926	203651927	rs1541252	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	1q32.1	ATP2B4	rs1541252-?	NR	9E-8				Illumina [544917]	N
2138	chr1	203652139	203652140	rs1541254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1541254-G	0.89393	4E-15				Affymetrix, Illumina [24649327] (imputed)	N
2138	chr1	203652443	203652444	rs1419114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q32.1	ATP2B4	rs1419114-A	0.9018374	3E-70		0.0650169	[0.058-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203652443	203652444	rs1419114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.1		rs1419114-?	NR	2E-84				NR [~ 8900000] (imputed)	N
2138	chr1	203652697	203652698	rs4951070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.1	NR	rs4951070-C	NR	2E-13		0.0297	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
2138	chr1	203653543	203653544	rs7547793	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1q32.1	ATP2B4	rs7547793-A	0.1303	7E-9		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
2138	chr1	203654023	203654024	rs10900585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.1	ATP2B4	rs10900585-T	0.9015594	3E-14		0.028299399	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203654023	203654024	rs10900585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.1	ATP2B4	rs10900585-T	0.9015502	1E-21		0.035482485	[0.028-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203654023	203654024	rs10900585	22895189	Timmann C	2012-08-15	Nature	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	1q32.1	ATP2B4	rs10900585-T	0.62	2E-10		1.64	[NR]	Affymetrix [4205739] (imputed)	N
2138	chr1	203654084	203654085	rs10900586	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q32.1	ATP2B4	rs10900586-A	NR	3E-20		0.0608923	[0.048-0.074] unit increase	Affymetrix [16832071] (imputed)	N
2138	chr1	203655120	203655121	rs7551442	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	1q32.1	ATP2B4	rs7551442-A	0.103	2E-6		0.134	[0.079-0.189] g/dL increase	Illumina [27801688] (imputed)	N
2138	chr1	203655120	203655121	rs7551442	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	1q32.1	NR	rs7551442-?	NR	3E-7				NR [2500000] (imputed)	N
2138	chr1	203655120	203655121	rs7551442	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	1q32.1	NR	rs7551442-?	NR	1E-8				NR [2500000] (imputed)	N
2138	chr1	203655742	203655743	rs7554335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.1	ATP2B4	rs7554335-G	0.9017527	2E-79		0.0698952	[0.063-0.077] unit increase	Affymetrix [93095623] (imputed)	N
2138	chr1	203655742	203655743	rs7554335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs7554335-G	0.89374	2E-110				Affymetrix, Illumina [21126107] (imputed)	N
2138	chr1	203655742	203655743	rs7554335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q32.1	NR	rs7554335-G	0.90061	2E-107		0.073736	[0.067-0.08] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2138	chr1	203655742	203655743	rs7554335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.1	NR	rs7554335-G	0.899911	2E-39		0.040343	[0.034-0.046] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2138	chr1	203655750	203655750	rs10625220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q32.1		rs10625220-ACTGC	NR	3E-25		0.0336	[0.027-0.04] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2138	chr1	203655750	203655750	rs10625220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	ATP2B4	rs10625220-ACTGC	0.9039306	6E-25		0.038690276	[0.031-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203655750	203655750	rs10625220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	ATP2B4	rs10625220-ACTGC	0.9039327	8E-23		0.0366853	[0.03-0.044] unit increase	Affymetrix [93095623] (imputed)	N
2138	chr1	203655753	203655753	rs757621541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	ATP2B4	rs757621541-GCCTT	0.870045	4E-12		0.025026392	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203656177	203656178	rs4347266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs4347266-A	0.105508	1E-94				Affymetrix, Illumina [22063850] (imputed)	N
2138	chr1	203656177	203656178	rs4347266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q32.1	NR	rs4347266-A	0.099262	3E-95		0.064768	[0.059-0.071] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2138	chr1	203657601	203657601	rs5780192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q32.1	ATP2B4	rs5780192-AT	0.8977	3E-10		0.03769582	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2138	chr1	203657610	203657610	rs397701441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q32.1		rs397701441-AT	NR	1E-13		0.0286	[0.021-0.036] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2138	chr1	203658470	203658471	rs4951377	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	1q32.1	ATP2B4, SNORA77, LINC00260, LAX1	rs4951377-?		9E-8	(additive)	0.14	[0.089-0.191] unit increase	Illumina [1492601] (imputed)	N
2138	chr1	203658470	203658471	rs4951377	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	1q32.1	ATP2B4, SNORA77, LINC00260, LAX1	rs4951377-?		1E-11	(dominant)	0.401	[0.33-0.47] unit increase	Illumina [1492601] (imputed)	N
2138	chr1	203658781	203658782	rs4951378	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1q32.1		rs4951378-G	NR	2E-9		0.05	[0.03-0.07] unit decrease	Illumina [101200590]	N
2138	chr1	203658781	203658782	rs4951378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.1		rs4951378-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2138	chr1	203658781	203658782	rs4951378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q32.1	ATP2B4	rs4951378-G	0.9007	1E-27		0.06455532	[0.053-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
2138	chr1	203660780	203660781	rs4951074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.1		rs4951074-G	NR	2E-18		0.03	[0.023-0.037] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2138	chr1	203660780	203660781	rs4951074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.1	NR	rs4951074-G	0.899964	2E-39		0.040392	[0.034-0.046] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2138	chr1	203660780	203660781	rs4951074	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.1	ATP2B4	rs4951074-A		4E-30		0.041	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2138	chr1	203660780	203660781	rs4951074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q32.1	ATP2B4	rs4951074-G	0.901	6E-11		0.03888983	[0.027-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2138	chr1	203667408	203667409	rs2228445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q32.1		rs2228445-C	NR	2E-11		0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2138	chr1	203667408	203667409	rs2228445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.1		rs2228445-C	NR	7E-20		0.0365	[0.029-0.044] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2138	chr1	203667408	203667409	rs2228445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.1	ATP2B4	rs2228445-C	0.901445	5E-28		0.04068849	[0.033-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203667408	203667409	rs2228445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.1	ATP2B4	rs2228445-C	0.9014289	8E-29		0.04131406	[0.034-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr1	203667408	203667409	rs2228445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs2228445-?	NR	1E-27				NR [~ 8900000] (imputed)	N
2139	chr1	203701499	203701500	rs146210682	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		1q32.1	intergenic	rs146210682-G	0.014	5E-6		1.713	[0.99-2.44] unit increase	Illumina [640625] (imputed)	N
2139	chr1	203709033	203709034	rs955865	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.1	ATP2B4	rs955865-A	0.4202	4E-15		0.0149	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
2139	chr1	203716842	203716843	rs116133558	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (percentage sleep with oxyhemoglobin saturation less than 90%)	10,759 Hispanic/Latino individuals	NA	1q32.1		rs116133558-T	NR	4E-10		1.181	[0.81-1.55] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
2139	chr1	203716842	203716843	rs116133558	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin saturation across sleep episode)	10,759 Hispanic/Latino individuals	NA	1q32.1		rs116133558-T	NR	2E-8		0.31	[0.2-0.42] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
2139	chr1	203716842	203716843	rs116133558	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea (average oxygen saturation during sleep)	12,557 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	1q32.1	intergenic	rs75108997-A	0.013	4E-7	(Hispanic)	0.296	[0.18-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2139	chr1	203716842	203716843	rs116133558	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea (average oxygen saturation during sleep)	12,557 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	1q32.1	NR	rs75108997-A	0.013	8E-6		0.21	[0.12-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2139	chr1	203716842	203716843	rs116133558	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea (average oxygen saturation during sleep)	12,557 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	1q32.1	ATP2B4	rs116133558-T	0.014	2E-7	(Hispanic, BMI-adjusted)	0.291	[0.18-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2139	chr1	203738565	203738566	rs866549590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs866549590-G	0.00564	3E-13		1.299	[0.95-1.65] unit decrease	Illumina [18353565] (imputed)	N
2139	chr1	203738565	203738566	rs866549590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs866549590-G	0.00564	4E-13		1.225	[0.9-1.55] unit increase	Illumina [18353565] (imputed)	N
2139	chr1	203738565	203738566	rs866549590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs866549590-G	0.00564	1E-13		1.244	[0.92-1.57] unit decrease	Illumina [18353565] (imputed)	N
2139	chr1	203738565	203738566	rs866549590	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs866549590-G	0.00564	5E-13		1.297	[0.95-1.65] unit increase	Illumina [18353565] (imputed)	N
2139	chr1	203739683	203739683	rs778040878	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	1q32.1		rs778040878-A	NR	7E-7		1.1304545	NR	Affymetrix [7846216] (imputed)	N
2139	chr1	203766330	203766331	rs4951011	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1q32.1		rs4951011-G	NR	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
2139	chr1	203766330	203766331	rs4951011	25038754	Cai Q	2014-07-20	Nat Genet	Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.	Breast cancer	2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls	5,029 Chinese ancestry cases, 5,302 Chinese ancestry controls, 6,066 Korean ancestry cases, 8,003 Korean ancestry controls, 6,572 Japanese ancestry cases, 6,539 Japanese ancestry controls, 16,003 European ancestry cases, 41,335 European ancestry controls	1q32.1	ZC3H11A	rs4951011-G	0.282	9E-9	(East Asian)	1.09	[1.06-1.12]	Affymetrix [up to 1930412] (imputed)	N
2139	chr1	203771322	203771323	rs80226387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q32.1		rs80226387-?	NR	1E-30				NR [~ 8900000] (imputed)	N
2139	chr1	203771322	203771323	rs80226387	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q32.1	NR	rs80226387-C	0.0303161	2E-57		0.142213	[0.12-0.16] unit decrease	NR [19129689] (imputed)	N
2139	chr1	203775521	203775522	rs34027291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q32.1		rs34027291-T	NR	5E-10		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2139	chr1	203784992	203784993	rs4951022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs4951022-?	NR	3E-17				NR [~ 8900000] (imputed)	N
2139	chr1	203790078	203790079	rs116315504	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q32.1	ZC3H11A	rs116315504-T	NR	2E-13		0.119572	NR unit decrease	NR [NR] (imputed)	N
2139	chr1	203791173	203791174	rs12123537	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q32.1	LAX1, ZBED6, ZC3H11A	rs12123537-T	NR	8E-14		0.12566	NR unit decrease	NR [NR] (imputed)	N
2139	chr1	203794752	203794753	rs61827266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.1		rs61827266-?	NR	8E-11				NR [~ 8900000] (imputed)	N
2139	chr1	203801248	203801249	rs59867004	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q32.1	NR	rs59867004-C	0.2724	1E-10	(EA)	0.0446	[0.031-0.058] unit increase	Illumina [~ 11800000] (imputed)	N
2140	chr1	203908117	203908118	rs2810650	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q32.1	NR	rs2810650-G	0.2068	3E-9	(EA)	0.0453	[0.03-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
2141	chr1	203965399	203965400	rs78448052	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q32.1	LAX1, SNRPE, ZBED6, ZC3H11A	rs78448052-T	NR	1E-15		0.143018	NR unit decrease	NR [NR] (imputed)	N
2141	chr1	203979113	203979114	rs115282290	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		1q32.1	NR	rs115282290-T	NR	2E-11		0.112802	NR unit decrease	NR [NR] (imputed)	N
2141	chr1	203991272	203991273	rs7519922	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroid stimulating hormone levels	626 Croatian individuals, 509 Korculan (founder/genetic isolate) individuals, 596 Vis (founder/genetic isolate) individuals	NA	1q32.1	SOX13	rs7519922-T	0.11	6E-8		0.3	[0.18-0.42] mIU/L decrease	Illumina [7411206] (imputed)	N
2141	chr1	204008938	204008939	rs12133007	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	1q32.1	NCRNA00303	rs12133007-T	NR	9E-7		9.2915	[5.64-12.94] unit decrease	Illumina [6097251] (imputed)	N
2141	chr1	204022416	204022417	rs56080959	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	1q32.1	NCRNA00303	rs56080959-A	NR	3E-6		8.8291	[5.17-12.49] unit decrease	Illumina [6097251] (imputed)	N
2141	chr1	204026452	204026453	rs12567918	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	1q32.1	SOX13	rs12567918-T	NR	7E-7		9.2903	[5.67-12.91] unit decrease	Illumina [6097251] (imputed)	N
2141	chr1	204030362	204030366	rs138638958	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q32.1	NR	rs138638958-TTTTG	NR	2E-10		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
2141	chr1	204038144	204038145	rs11240656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q32.1		rs11240656-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2141	chr1	204046778	204046779	rs12118495	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	1q32.1	SOX13	rs12118495-T	0.071	4E-7	(Other antiinflammatory and antirheumatic agents, non-steroids [M01AX])	2.24		Illumina [16500000] (imputed)	N
2141	chr1	204058736	204058737	rs12125543	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q32.1	SOX13	rs12125543-G	0.348	2E-8		0.0217323	[0.014-0.029] unit increase	Illumina [13520550] (imputed)	N
2141	chr1	204069837	204069838	rs3795579	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	1q32.1	SOX13	rs3795579-T	NR	1E-6		0.0175917	[0.011-0.025] unit increase	Illumina [13519193] (imputed)	N
2141	chr1	204069837	204069838	rs3795579	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	1q32.1	SOX13	rs3795579-T	NR	1E-6		0.0160063	[0.0096-0.0224] unit increase	Illumina [13520550] (imputed)	N
2141	chr1	204074864	204074865	rs4951043	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	1q32.1	ETNK2, GOLT1A, KISS1, LINC00303, PLEKHA6, REN, SNRPE, SOX13	rs4951043-C	0.46	7E-7		0.44	[0.26-0.62] unit decrease	Illumina [at least 4710000] (imputed)	N
2142	chr1	204103617	204103618	rs2293335	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	1q32.1	ETNK2	rs2293335-?	0.3	5E-6	(Age 20-60 years)	1.35	[1.19-1.54]	Affymetrix, Illumina [up to 17585496] (imputed)	N
2142	chr1	204112983	204112984	rs3795578	21177773	Moyer AM	2010-12-22	Toxicol Sci	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	1q32.1	ETNK2	rs3795578-?	0.40	7E-6				Affymetrix, Illumina [1348864]	N
2142	chr1	204145577	204145578	rs72749713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q32.1		rs72749713-?	NR	9E-10				NR [~ 8900000] (imputed)	N
2142	chr1	204147185	204147186	rs7513165	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	1q32.1	KISS1	rs7513165-?		3E-7				Illumina [~ 9600000] (imputed)	N
2142	chr1	204147185	204147186	rs7513165	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised social anhedonia scale)	3,837 Finnish ancestry individuals	NA	1q32.1	KISS1	rs7513165-?		2E-6				Illumina [~ 9600000] (imputed)	N
2142	chr1	204147185	204147186	rs7513165	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	1q32.1	KISS1	rs7513165-?		2E-6				Illumina [~ 9600000] (imputed)	N
2142	chr1	204147185	204147186	rs7513165	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and perceptual aberration scale)	3,824 Finnish ancestry individuals	NA	1q32.1	KISS1	rs7513165-?		2E-6				Illumina [~ 9600000] (imputed)	N
2142	chr1	204148648	204148649	rs193280350	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Renin levels	21,758 European ancestry individuals	9,173 individuals	1q32.1		rs193280350-A	0.012	8E-108		0.9625	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2142	chr1	204148648	204148649	rs193280350	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	REN	rs193280350-A	0.008	1E-15	(Renin, REN.3396.54.2)	1.2	[0.91-1.49] unit increase	Affymetrix [10572788] (imputed)	N
2142	chr1	204153450	204153450	rs201416723	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q32.1	NR	rs201416723-ATCT	0.18500300000000003	8E-13		0.0120588	[0.0086-0.0155] unit increase	Affymetrix [16578495] (imputed)	N
2142	chr1	204157167	204157168	rs4951315	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Renin levels	21,758 European ancestry individuals	9,173 individuals	1q32.1		rs4951315-A	0.3	6E-18		0.0878	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2142	chr1	204158131	204158132	rs11240695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	1q32.1	NR	rs11240695-A	0.24686399999999997	2E-15		0.0183046	[0.014-0.023] unit increase	Affymetrix [16583148] (imputed)	N
2142	chr1	204159786	204159787	rs4889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q32.1		rs4889-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2142	chr1	204161533	204161534	rs35737316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q32.1	NR	rs35737316-T	0.24575400000000003	4E-27		0.036313	[0.029-0.043] unit increase	Affymetrix [16577313] (imputed)	N
2142	chr1	204161533	204161534	rs35737316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	1q32.1	NR	rs35737316-T	0.24568999999999996	5E-32		0.0402393	[0.033-0.047] unit increase	Affymetrix [16577424] (imputed)	N
2142	chr1	204184669	204184670	rs73073710	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	1q32.1		rs73073710-?	NR	9E-7		1.52999	[1.36-1.7]	NR [674885]	N
2142	chr1	204191383	204191384	rs17333206	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	GOLT1A	rs17333206-?	NR	8E-6	(glutamine)	0.45578438	[0.26-0.66] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2143	chr1	204220231	204220232	rs10900568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.1	PLEKHA6	rs10900568-C	0.532405	6E-11		0.014457382	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204220231	204220232	rs10900568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.1	PLEKHA6	rs10900568-C	0.532374	4E-12		0.015317055	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204230580	204230581	rs3795569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q32.1		rs3795569-A	NR	6E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2143	chr1	204230580	204230581	rs3795569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	PLEKHA6	rs3795569-A	0.54077	4E-10		0.013814183	[0.0095-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204232872	204232873	rs4951055	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q32.1		rs4951055-T	NR	7E-6		2.3419	[1.34-3.34] unit increase	Illumina [NR] (imputed)	N
2143	chr1	204238402	204238403	rs10793760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	PLEKHA6	rs10793760-A	0.374317	2E-10		0.014940749	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2143	chr1	204254761	204254762	rs4548504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.1	NR	rs4548504-T	0.548131	3E-11		0.012403	[0.0087-0.0161] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2143	chr1	204254761	204254762	rs4548504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs4548504-?	NR	6E-10				NR [~ 8900000] (imputed)	N
2143	chr1	204262031	204262037	rs796130745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	PLEKHA6	rs796130745-C	0.706438	5E-23		0.025033394	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204262031	204262037	rs796130745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.1	PLEKHA6	rs796130745-CTGTTAG	0.293304	4E-12		0.01698189	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204262031	204262037	rs796130745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.1	PLEKHA6	rs796130745-C	0.706689	1E-16		0.020354582	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2143	chr1	204266748	204266749	rs35457431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs35457431-A	0.244272	2E-13				Affymetrix, Illumina [23467995] (imputed)	N
2143	chr1	204266979	204266980	rs6594001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs6594001-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2143	chr1	204269184	204269185	rs4531346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs4531346-A	0.243968	1E-19				Affymetrix, Illumina [23472807] (imputed)	N
2143	chr1	204274518	204274519	rs7534537	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		1q32.1	PLEKHA6	rs7534537-T	NR	3E-6		0.0587	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2143	chr1	204280619	204280619	rs36122125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q32.1	PLEKHA6	rs36122125-CA	0.2426	2E-12		0.03067111	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2143	chr1	204283358	204283359	rs12034941	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	1q32.1	PLEKHA6	rs12034941-?	NR	3E-9		0.0472	NR L increase	Affymetrix [9390170] (imputed)	N
2143	chr1	204283574	204283575	rs17333822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.1	NR	rs17333822-C	0.256305	2E-23		0.021586	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2143	chr1	204289392	204289393	rs4245729	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.1		rs4245729-A	0.44	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
2143	chr1	204301821	204301822	rs17405885	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs17405885-C	0.23116	3E-23				Affymetrix, Illumina [24588908] (imputed)	N
2143	chr1	204306108	204306109	rs17334002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	PLEKHA6	rs17334002-C	0.263495	2E-25		0.026571402	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2143	chr1	204317154	204317155	rs4951365	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	PLEKHA6	rs4951365-A	0.320049	9E-9	(0 ms)	0.0333828	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
2143	chr1	204317154	204317155	rs4951365	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	PLEKHA6	rs4951365-A	0.320049	3E-8	(-4 ms)	0.0316184	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2143	chr1	204317154	204317155	rs4951365	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	PLEKHA6	rs4951365-A	0.320049	2E-8	(-2 ms)	0.0327954	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
2143	chr1	204317154	204317155	rs4951365	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	PLEKHA6	rs4951365-A	0.320049	1E-8	(2 ms)	0.0330379	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
2143	chr1	204321017	204321018	rs10793761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q32.1		rs10793761-C	NR	1E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2144	chr1	204344756	204344757	rs112725747	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	1q32.1	NR	rs112725747-T	NR	2E-6	(Hispanic)	9.46	[5.68-13.25] unit increase	Affymetrix [14000000] (imputed)	N
2144	chr1	204348641	204348642	rs35568631	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	1q32.1	NR	rs35568631-A		6E-6		0.2069	[0.12-0.3] unit increase	Illumina [12764477] (imputed)	N
2144	chr1	204359763	204359764	rs1512114	32998964	Trendowski MR	2020-09-30	Clin Cancer Res	Clinical and Genome-Wide Analysis of Multiple Severe Cisplatin-Induced Neurotoxicities in Adult-Onset Cancer Survivors.	Multiple severe cisplatin-induced neurotixicitiies in testicular cancer survivors	104 European ancestry cases, 196 European ancestry controls	NA	1q32.1	NR	rs1512114-G		8E-6		3.676	[NR]	Illumina [5385324] (imputed)	N
2144	chr1	204403658	204403659	rs3747636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.1		rs3747636-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2144	chr1	204416500	204416501	rs3827534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q32.1	NR	rs3827534-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2144	chr1	204426294	204426295	rs1008833	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.1	PIK3C2B	rs1008833-G	0.1385	4E-8		0.015718197	[0.01-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
2144	chr1	204426294	204426295	rs1008833	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q32.1	PIK3C2B	rs1008833-A	0.8541	2E-19		0.0324	[0.025-0.039] unit decrease	Affymetrix [19819130] (imputed)	N
2144	chr1	204426294	204426295	rs1008833	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	PIK3C2B	rs1008833-A	0.8541	2E-13		0.0244	[0.018-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
2144	chr1	204426294	204426295	rs1008833	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q32.1	PIK3C2B	rs1008833-A	0.8541	5E-18		0.0287	[0.022-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
2144	chr1	204434926	204434927	rs12092943	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Body mass index	3,013 Korean ancestry individuals	NA	1q32.1	NR	rs12092943-G	NR	1E-6		0.3632	[0.22-0.51] unit increase	Affymetrix [NR]	N
2144	chr1	204434926	204434927	rs12092943	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q32.1		rs12092943-?	NR	7E-6		13.72	[7.72-19.72] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
2144	chr1	204434926	204434927	rs12092943	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q32.1	PIK3C2B	rs12092943-T	0.74	5E-8		14.57	[9.34-19.8] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
2144	chr1	204446687	204446688	rs1980050	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	1q32.1	PIK3C2B	rs1980050-T	0.19	9E-7	(Right facial angle of en-ps-go)	0.725	[NR] unit increase	Affymetrix [311944]	N
2144	chr1	204453319	204453320	rs11240748	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.1	PIK3C2B	rs11240748-T	0.2164	2E-8		0.013688302	[0.0089-0.0184] unit increase	Affymetrix [up to 18485882] (imputed)	N
2144	chr1	204458327	204458328	rs1398148	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	1q32.1		rs1398148-G	NR	5E-8		1.0927768	NR	Affymetrix [7846216] (imputed)	N
2144	chr1	204458327	204458328	rs1398148	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	1q32.1		rs1398148-G	NR	3E-10		1.0881393	[1.06-1.12]	Affymetrix [7846216] (imputed)	N
2144	chr1	204465658	204465659	rs16853865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	1q32.1		rs16853865-G	NR	3E-11		0.0672	[0.047-0.087] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
2144	chr1	204469313	204469314	rs12036042	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q32.1		rs12036042-T	0.7985	2E-8		41.288166	z score increase	NR [6814003]	N
2145	chr1	204474581	204474589	rs201297151	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1q32.1	MDM4	rs201297151-CAAAAAAAA	0.44	3E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
2145	chr1	204483845	204483846	rs34242990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q32.1	MDM4	rs34242990-C	0.305904	6E-12		0.01697795	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2145	chr1	204483845	204483846	rs34242990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q32.1	MDM4	rs34242990-C	0.305911	2E-11		0.016589683	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2145	chr1	204490469	204490470	rs12041243	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs12041243-G	0.2426	3E-10		0.0293	[0.02-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2145	chr1	204502910	204502910	rs59912938	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.1	MDM4	rs59912938-CT	0.6635	4E-16		0.0164	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
2145	chr1	204508146	204508147	rs4252707	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	1q32.1	MDM4	rs4252707-A	0.22	3E-9		1.19	1.12-1.26	Illumina [at least 6769856] (imputed)	N
2145	chr1	204508146	204508147	rs4252707	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	1q32.1	MDM4	rs4252707-A	0.22	3E-7		1.12	1.07-1.17	Illumina [at least 6887412] (imputed)	N
2145	chr1	204516024	204516025	rs2290854	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	1q32.1	MDM4	rs2290854-A	0.31	1E-7		1.13	[1.08-1.18]	Illumina [2568349] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	1q32.1	NR	rs4245739-A	0.724814157	2E-8		1.1148883	[1.07-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q32.1	NR	rs4245739-A	NR	2E-29		1.092	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	1q32.1	NR	rs4245739-A	NR	1E-7		1.09	NR	Affymetrix [at least 232408] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	1q32.1	NR	rs4245739-A	0.74	3E-24		1.1	[1.08-1.12]	Illumina [20370935] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1q32.1	MDM4	rs4245739-?		2E-9				Affymetrix, Illumina [18800000] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1q32.1	MDM4	rs4245739-C	0.26	3E-23		1.14	[1.11-1.16]	Illumina [~ 11500000] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1q32.1	MDM4	rs4245739-A	0.737	1E-6		0.326	[0.19-0.46] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
2145	chr1	204518841	204518842	rs4245739	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1q32.1	MDM4	rs4245739-A	0.737	5E-9		0.243	[0.16-0.32] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
2145	chr1	204518841	204518842	rs4245739	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	1q32.1	MDM4	rs4245739-?	0.26	6E-15		1.13	[1.11-1.19]	Illumina [10909381] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	1q32.1	MDM4	rs4245739-?	0.28	8E-18		1.09	[1.05-1.14] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	24325915	Purrington KS	2013-12-09	Carcinogenesis	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	1q32.1	MDM4	rs4245739-C		4E-6		1.19	[1.11-1.29]	Illumina [NR] (imputed)	N
2145	chr1	204518841	204518842	rs4245739	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	1q32.1	LRRN2, PIK3C2B, MDM4	rs4245739-?	0.26	2E-12		1.14	[1.10-1.18]	Illumina [NR]	N
2145	chr1	204518841	204518842	rs4245739	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	1q32.1	LRRN2, PIK3C2B, LOC127841, MDM4, PPP1R15B, PLEKHA6	rs4245739-A	0.75	2E-11		1.1	[1.05-1.14]	Illumina [~ 2600000] (imputed)	N
2145	chr1	204524473	204524474	rs12116645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs12116645-T	0.673671	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
2145	chr1	204527059	204527060	rs1046874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.1		rs1046874-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2145	chr1	204528343	204528344	rs16853958	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1q32.1	MDM4	rs16853958-A	0.32	4E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2145	chr1	204530501	204530502	rs12756329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q32.1		rs12756329-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2145	chr1	204533283	204533284	rs4951080	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	1q32.1	MDM4	rs4951080-?	0.323	3E-9		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
2145	chr1	204541196	204541197	rs930947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	1q32.1		rs930947-A	NR	3E-9		0.0942	[0.063-0.125] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
2145	chr1	204541341	204541342	rs4951404	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.1	MDM4	rs4951404-C	0.7334	6E-9		0.1577	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
2145	chr1	204549374	204549375	rs10793765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs10793765-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2145	chr1	204551829	204551830	rs16854023	32355309	Cha PC	2020-05-01	J Hum Genet	Genome-wide association study identifies zonisamide responsive gene in Parkinson's disease patients.	Levodopa wearing off effect (time symptoms uncontrolled) in Parkinson's disease (response to zonisamide)	67 Japanese ancestry responders, 133 Japanese ancestry poor responders	NA	1q32.1	MDM4	rs16854023-T	0.47	4E-8		7.518797	[NR]	Illumina [611492]	N
2145	chr1	204556835	204556836	rs12133735	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1q32.1	NR	rs12133735-G	0.4	2E-7		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
2145	chr1	204560003	204560004	rs12043569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q32.1	Intergenic	rs12043569-C	0.7721	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2145	chr1	204560676	204560677	rs6679717	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	1q32.1	AL512306.3	rs6679717-?		3E-13				Illumina [5041948] (imputed)	N
2145	chr1	204563345	204563346	rs11808748	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.1	RP11-430C7.4	rs11808748-T	0.1127	3E-10		0.01988211	[0.014-0.026] unit increase	Affymetrix [up to 18485882] (imputed)	N
2145	chr1	204572070	204572071	rs12143943	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q32.1	MDM4	rs12143943-?	0.413	5E-6	(PAL8)			Illumina [475971]	N
2145	chr1	204573480	204573481	rs55678522	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.1	NR	rs55678522-?	NR	7E-6		4.504	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2145	chr1	204576982	204576983	rs11584700	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	1q32.1	LRRN2	rs11584700-A	0.790836	3E-9	(EA)	0.00898544	[0.006-0.012] unit increase	Affymetrix [~ 8800000] (imputed)	N
2145	chr1	204576982	204576983	rs11584700	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	1q32.1	LRRN2	rs11584700-?	0.22	8E-12	(College)	1.09	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
2145	chr1	204580831	204580832	rs57450685	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q32.1	NA	rs57450685-T		2E-9		0.0132387	[0.0089-0.0176] unit decrease	Illumina [13288253] (imputed)	N
2145	chr1	204583450	204583451	rs35449046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	RP11-430C7.4	rs35449046-A	0.490263	3E-12		0.015658911	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2145	chr1	204586811	204586812	rs3789045	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	1q32.1	NR	rs3789045-T	0.2111	3E-9		1.0433753	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q32.1		rs11588857-A	0.209	2E-11		55.58362	z score increase	NR [6814003]	N
2145	chr1	204587046	204587047	rs11588857	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.1	LRRN2	rs11588857-A	0.2029	4E-17		0.020963155	[0.016-0.026] unit increase	Affymetrix [up to 18485882] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	1q32.1	LRRN2	rs11588857-A	NR	1E-8		0.01154	[0.0076-0.0155] unit increase	Affymetrix [18485882] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.1	Intergenic	rs11588857-A	0.2179	2E-27	(MTAG)	0.0217	[0.018-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.1		rs11588857-A	0.2131	4E-31		0.0199	[0.017-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.1	Intergenic	rs11588857-A	0.2131	2E-33	(MTAG)	0.0193	[0.016-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1q32.1	LRRN2	rs11588857-A	NR	2E-10		0.023015995	[0.016-0.03] unit increase	Affymetrix [NR]	N
2145	chr1	204587046	204587047	rs11588857	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1q32.1	LRRN2	rs11588857-?	NR	2E-9		5.967	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
2145	chr1	204587046	204587047	rs11588857	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1q32.1	NR	rs11588857-A	0.2106	3E-13		0.019844992	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2145	chr1	204587568	204587569	rs3747631	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q32.1	LRRN2	rs3747631-?	NR	1E-16		0.020482434	[0.016-0.025] unit increase	NR [7306098]	N
2145	chr1	204587568	204587569	rs3747631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q32.1		rs3747631-?	NR	1E-18				NR [~ 8900000] (imputed)	N
2145	chr1	204587568	204587569	rs3747631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.1	Intergenic	rs3747631-C	0.2176	1E-17	(MTAG)	0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2145	chr1	204587568	204587569	rs3747631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q32.1	Intergenic	rs3747631-G	0.7824	4E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2145	chr1	204587568	204587569	rs3747631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q32.1	Intergenic	rs3747631-C	0.2106	3E-18	(MTAG)	0.0245	[0.019-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2145	chr1	204588139	204588140	rs3747630	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	1q32.1	PLEKHA6, LOC127841, PPP1R15B, PIK3C2B, MDM4, LRRN2, NFASC	rs3747630-G	0.757727	3E-8		0.00473573	[0.0031-0.0064] unit decrease	NR [NR] (imputed)	N
2145	chr1	204589100	204589101	rs3789044	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1q32.1	intergenic	rs3789044-A	0.219	5E-8		0.028	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2145	chr1	204591236	204591237	rs884108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.1		rs884108-A	0.222	2E-8		0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2145	chr1	204596453	204596454	rs45501495	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	1q32.1	PIK3C2B, MDM4, LRRN2	rs45501495-?	NR	2E-8		0.00243911	[-0.00323-0.0081] unit decrease	Affymetrix [25921788] (imputed)	N
2145	chr1	204596453	204596454	rs45501495	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	1q32.1	PIK3C2B, MDM4, LRRN2	rs45501495-?	NR	2E-8		0.0162352	[0.011-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
2145	chr1	204596453	204596454	rs45501495	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q32.1	PIK3C2B, MDM4, LRRN2	rs45501495-?	NR	9E-10		0.0175379	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
2145	chr1	204599294	204599295	rs7551222	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.1	NR	rs7551222-A	NR	5E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
2146	chr1	204608193	204608194	rs61817490	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.1	LRRN2	rs61817490-A	0.1363	6E-9		0.016586553	[0.011-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
2146	chr1	204610671	204610672	rs116661163	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	1q32.1	REN	rs116661163-C	0.98	4E-17		0.72	unit decrease	Illumina [5270624] (imputed)	N
2146	chr1	204614474	204614475	rs11801229	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.1		rs11801229-A	0.857	2E-10		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
2146	chr1	204616389	204616390	rs1329631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs1329631-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2146	chr1	204632064	204632065	rs2772233	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	1q32.1	RP11-23I7.1	rs2772233-A	0.710594	1E-8				Affymetrix, Illumina [NR] (imputed)	N
2146	chr1	204633499	204633500	rs1610401	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Polyomavirus 2  JC VP1 antibody levels	5,118 White British ancestry individuals	NA	1q32.1	LRRN2	rs1610401-G	0.026	2E-8		0.35	[0.23-0.47] unit increase	NR [25472218] (imputed)	N
2146	chr1	204647492	204647493	rs6593890	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	1q32.1		rs6593890-G	0.79	7E-6		0.11	[0.071-0.149] unit increase	Illumina [5305352] (imputed)	N
2146	chr1	204728541	204728542	rs12070501	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q32.1	NR	rs12070501-?		4E-6				Illumina [4322238] (imputed)	N
2147	chr1	204767304	204767305	rs11240285	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1q32.1	LRRN2, NFASC	rs11240285-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
2147	chr1	204784017	204784018	rs7552806	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1q32.1	NFASC	rs7552806-?	NR	3E-6	(DMFS5,DMFS5max)			Illumina [518997]	N
2147	chr1	204784017	204784018	rs7552806	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	1q32.1	NFASC	rs7552806-?	NR	3E-6	(DMFS5, DMFS5max)			Illumina [518997]	N
2147	chr1	204804140	204804141	rs11240290	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NFASC	5,368 Icelandic ancestry individuals	NA	1q32.1		rs11240290-G	0.1007	1E-23		0.306067	[0.25-0.37] unit increase	Illumina [7506463] (imputed)	N
2147	chr1	204812117	204812118	rs869841	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs869841-C	0.084	9E-34	(Neurofascin, NFASC.7179.69.3)	0.52	[0.44-0.6] unit increase	Affymetrix [10572788] (imputed)	N
2147	chr1	204841194	204841195	rs12401772	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	1q32.1	NR	rs12401772-?	NR	8E-6		5.5438	[0.42-10.67] unit increase	Illumina [at least 560000] (imputed)	N
2147	chr1	204843658	204843659	rs112534904	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	1q32.1		rs112534904-?	NR	4E-6		0.7350759	[0.42-1.05] unit decrease	Illumina [9842460] (imputed)	N
2147	chr1	204859748	204859749	rs7541623	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	1q32.1		rs7541623-?	NR	8E-6				Illumina [3311160] (imputed)	N
2147	chr1	204864151	204864152	rs1923665	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	1q32.1		rs1923665-?	NR	2E-6				Affymetrix, Illumina [3311160] (imputed)	N
2148	chr1	204877651	204877652	rs2247208	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1q32.1	NFASC	rs2247208-?		8E-6				Illumina [859311]	N
2148	chr1	204889908	204889909	rs76242821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs76242821-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2148	chr1	204896803	204896804	rs147964682	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	1q32.1	NFASC	rs147964682-G	0.012	3E-9		0.584	unit increase	Affymetrix [7969123] (imputed)	N
2148	chr1	204917579	204917580	rs2068666	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1q32.1	NFASC	rs2068666-G	0.0813	9E-6		2.38	[2.00-2.76]	Illumina [8809853] (imputed)	N
2148	chr1	204920321	204920322	rs11240317	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q32.1	CNTN2	rs11240317-C	0.2987	2E-11		0.014185315	[0.01-0.018] unit increase	Illumina [9339358] (imputed)	N
2148	chr1	204924684	204924685	rs7534993	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q32.1	NA	rs7534993-G		3E-8		0.0106949	[0.0069-0.0145] unit increase	Illumina [13288253] (imputed)	N
2148	chr1	204943946	204943947	rs2246662	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	NFASC	rs2246662-A	0.3929648	4E-11	(EA, Contactin-2)	0.2992	[0.21-0.39] unit increase	Affymetrix [509946]	N
2148	chr1	204943990	204943991	rs2246661	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	1q32.1	NFASC	rs2246661-C	0.215	3E-8		1.26	NR	Affymetrix, Illumina [4996193] (imputed)	N
2148	chr1	204946763	204946764	rs6663324	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NFASC	5,368 Icelandic ancestry individuals	NA	1q32.1		rs6663324-C	0.08955	2E-58		0.514366	[0.45-0.58] unit increase	Illumina [7506463] (imputed)	N
2148	chr1	204946763	204946764	rs6663324	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	NFASC	rs6663324-T	0.9078125	8E-37	(NFASC, 7179_69_3)	0.5239812	[0.44-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
2148	chr1	204948658	204948659	rs6667532	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NFASC	rs6667532-G	0.105	4E-100	(Neurofascin, NFASC.7179.69.3)	0.82	[0.74-0.9] unit increase	Affymetrix [10572788] (imputed)	N
2148	chr1	204951208	204951209	rs2278796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.1	NFASC	rs2278796-T	0.3076	1E-28		0.04339685	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
2148	chr1	204953485	204953485	rs10657459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	NFASC	rs10657459-ATG	0.430541	4E-14		0.017711788	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2148	chr1	204955328	204955329	rs11240325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	NFASC	rs11240325-G	0.335593	3E-58		0.038360834	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
2148	chr1	204955415	204955416	rs11240326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q32.1		rs11240326-G	0.664	1E-10				Affymetrix [10369434] (imputed)	N
2148	chr1	204959013	204959014	rs17343527	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q32.1		rs17343527-T	0.887	6E-13				Affymetrix [10369434] (imputed)	N
2148	chr1	204966169	204966170	rs16854920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.1	Intergenic	rs16854920-T	0.6615	5E-8	(MTAG)	0.0076	[0.0049-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2148	chr1	204967185	204967186	rs35068223	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.1		rs35068223-A	0.794	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
2148	chr1	204967185	204967186	rs35068223	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	1q32.1	CNTN2	rs35068223-A	0.7957	3E-9		0.017389074	[0.012-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
2148	chr1	204968338	204968339	rs11240331	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q32.1	NFASC	rs11240331-C	0.738345	2E-9		0.0140348	[0.0094-0.0187] unit decrease	NR [16516521] (imputed)	N
2148	chr1	204978703	204978704	rs55678495	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q32.1	NFASC	rs55678495-A	0.159	6E-15		0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2148	chr1	204984571	204984572	rs2802847	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1q32.1	NR	rs2802847-?		7E-6	(CCL24)	0.0972	[NR] unit increase	Illumina [NR]	N
2148	chr1	204989910	204989911	rs3795559	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	NFASC	rs3795559-A	0.04819277	8E-13	(Contactin-2)	0.7153	[0.52-0.91] unit increase	Affymetrix [509946]	N
2149	chr1	205005226	205005227	rs116611488	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	1q32.1	CNTN2	rs116611488-T	0.009	3E-6		4.22	[2.31-7.72]	Affymetrix [645639] (imputed)	N
2149	chr1	205012197	205012198	rs2071533	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN2	5,365 Icelandic ancestry individuals	NA	1q32.1		rs2071533-T	0.1071	6E-136		0.720332	[0.66-0.78] unit increase	Illumina [7506463] (imputed)	N
2149	chr1	205012197	205012198	rs2071533	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	CNTN2	rs2071533-G	0.865	7E-108	(Contactin-2, CNTN2.3296.92.2)	0.77	[0.71-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
2149	chr1	205014929	205014930	rs3820337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q32.1	Intergenic	rs3820337-T	0.1494	4E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2149	chr1	205015283	205015284	rs11240341	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.1	CNTN2	rs11240341-T	NR	9E-7		1.052	[1.03-1.07]	Illumina [6627481] (imputed)	N
2149	chr1	205015283	205015284	rs11240341	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.1	CNTN2	rs11240341-T	NR	3E-6	(EA)	1.056	[1.03-1.08]	Illumina [6627481] (imputed)	N
2149	chr1	205015283	205015284	rs11240341	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q32.1	intergenic	rs11240341-T	NR	3E-6		1.049	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2149	chr1	205016697	205016698	rs3753854	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	1q32.1	NR	rs3753854-?		7E-6		2.09	[1.51-2.89]	Illumina [539473] (imputed)	N
2149	chr1	205019225	205019226	rs10900437	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN2	5,365 Icelandic ancestry individuals	NA	1q32.1		rs10900437-A	0.1787	5E-79		0.456929	[0.41-0.5] unit increase	Illumina [7506463] (imputed)	N
2149	chr1	205021948	205021949	rs78926127	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Renin levels	21,758 European ancestry individuals	9,173 individuals	1q32.1		rs78926127-A	0.016	1E-19		0.3597	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2149	chr1	205024011	205024012	rs1572995	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	CNTN2	rs1572995-T	0.9	1E-67	(CNTN2, 3296_92_2)	0.71368647	[0.64-0.79] unit decrease	Illumina [> 1000000] (imputed)	N
2149	chr1	205027560	205027561	rs9787409	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	NR	rs9787409-T	0.153	3E-61	(Contactin-2, CNTN2.3296.92.2)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
2149	chr1	205030861	205030862	rs41264869	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	CNTN2, RBBP5, AL583832.1, TMEM81, RP11-536L3.4	rs41264869-T	0.1705115	4E-11	(Contactin-2)	0.3885	[0.27-0.5] unit decrease	Affymetrix [509946]	N
2149	chr1	205031768	205031769	rs2242000	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q32.1	NR	rs2242000-A	0.18	3E-11		0.0158	[0.011-0.021] unit increase	NR [NR]	N
2149	chr1	205031768	205031769	rs2242000	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q32.1	NR	rs2242000-?	NR	2E-13	(Contactin-2)			Illumina [514227]	N
2149	chr1	205035454	205035455	rs16937	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.1	NR	rs16937-A	NR	5E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2149	chr1	205036825	205036826	rs3767297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.1	Intergenic	rs3767297-A	0.153	3E-8	(MTAG)	0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2149	chr1	205037675	205037676	rs6593920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q32.1	Intergenic	rs6593920-T	0.5463	2E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2149	chr1	205041157	205041158	rs2229868	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q32.1	TMEM81	rs2229868-T	0.209	5E-10		0.014860554	[0.01-0.02] unit increase	Illumina [9339358] (imputed)	N
2149	chr1	205041464	205041465	rs6662930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs6662930-C	0.374062	8E-39				Affymetrix, Illumina [24332387] (imputed)	N
2149	chr1	205041541	205041542	rs3903399	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q32.1	CNTN2	rs3903399-T	0.788585	3E-8		0.0129246	[0.0084-0.0175] unit increase	Affymetrix [NR] (imputed)	N
2149	chr1	205041541	205041542	rs3903399	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q32.1	NA	rs3903399-T	0.7847	7E-12		0.0149	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
2149	chr1	205041951	205041952	rs6696846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.1	NR	rs6696846-T	0.484298	1E-38		0.023991	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2149	chr1	205041951	205041952	rs6696846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q32.1	CNTN2	rs6696846-T	0.487	2E-12		0.02492552	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2149	chr1	205044338	205044339	rs11240351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q32.1		rs11240351-G	NR	5E-22		0.0203	[0.016-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2149	chr1	205044338	205044339	rs11240351	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q32.1	CNTN2	rs11240351-G	0.4	1E-17		8.56	z-score increase	Affymetrix [4314223] (imputed)	N
2149	chr1	205044338	205044339	rs11240351	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs11240351-G	0.4696	1E-10		0.0256	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2149	chr1	205044865	205044866	rs7518906	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	1q32.1	NR	rs7518906-?	NR	2E-15	(CNTN2)			Illumina [~ 4000000] (imputed)	N
2149	chr1	205045086	205045087	rs1572993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.1	CNTN2	rs1572993-A	NR	3E-10		0.0180016	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
2149	chr1	205045086	205045087	rs1572993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.1	CNTN2	rs1572993-A	NR	8E-10		0.0175075	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
2149	chr1	205051710	205051711	rs11240352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.1		rs11240352-C	NR	4E-21		0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2149	chr1	205053218	205053219	rs4951168	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	CNTN2, RBBP5, DSTYK, TMEM81, RP11-383G10.5, RP11-536L3.4, RP11-383G10.1, TMCC2	rs4951168-C	0.1465257	2E-39	(Contactin-2)	0.7847	[0.67-0.9] unit increase	Affymetrix [509946]	N
2149	chr1	205056326	205056327	rs559370413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1q32.1	RBBP5	rs559370413-A	0.4912	3E-12		0.02464916	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2149	chr1	205070572	205070573	rs11240358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q32.1	RBBP5	rs11240358-G	0.605972	4E-11		0.013425	[0.0094-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
2149	chr1	205074018	205074019	rs6692170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs6692170-A	0.412759	1E-38				Affymetrix, Illumina [19905671] (imputed)	N
2149	chr1	205075358	205075359	rs4950981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs4950981-?	NR	2E-18				NR [~ 8900000] (imputed)	N
2149	chr1	205077025	205077026	rs548138620	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on naive-mature B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs548138620-G	0.01444	8E-11		0.68	[0.48-0.88] unit increase	Illumina [18234616] (imputed)	N
2149	chr1	205078701	205078702	rs202021413	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q32.1	NR	rs202021413-TA	0.516847	5E-15		0.00971118	[0.0072-0.0122] unit increase	Affymetrix [16585854] (imputed)	N
2149	chr1	205078701	205078702	rs202021413	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q32.1	NR	rs202021413-TA	0.516847	1E-11		0.00974712	[0.0068-0.0127] unit increase	Affymetrix [16585866] (imputed)	N
2149	chr1	205081165	205081166	rs61822568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q32.1	NR	rs61822568-C	0.550978	1E-522		0.093406	[0.09-0.097] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2149	chr1	205094566	205094568	rs35671561	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q32.1	NR	rs35671561-C	NR	1E-9		0.0254575	[0.017-0.034] unit decrease	Affymetrix [16832071] (imputed)	N
2149	chr1	205095290	205095291	rs147728054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	RBBP5	rs147728054-G	0.015364	8E-17		0.07835862	[0.06-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
2149	chr1	205100662	205100663	rs6593925	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q32.1	DSTYK	rs6593925-?	NR	1E-17		0.003	[0.002-0.004] unit decrease	Affymetrix [21347608] (imputed)	N
2149	chr1	205100662	205100663	rs6593925	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q32.1	DSTYK	rs6593925-?	NR	6E-10		0.004	[0.0024-0.0056] unit decrease	Affymetrix [21347608] (imputed)	N
2149	chr1	205100662	205100663	rs6593925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q32.1	NR	rs6593925-C	0.907479	2E-11		0.02229	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2149	chr1	205104577	205104578	rs199791922	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	1q32.1	NR	rs199791922-AC		8E-6		0.0861	[0.048-0.124] SD units increase	NR [10700000] (imputed)	N
2149	chr1	205104580	205104581	rs113817010	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q32.1	NR	rs113817010-A	0.4445	3E-14				NR [9056863] (imputed)	N
2149	chr1	205104580	205104581	rs113817010	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q32.1	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs113817010-?		5E-9				NR [7428630] (imputed)	N
2149	chr1	205110451	205110452	rs6593924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.1		rs6593924-?	NR	1E-35				NR [~ 8900000] (imputed)	N
2149	chr1	205112910	205112911	rs3795556	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	1q32.1	DSTYK	rs3795556-?	NR	4E-9				Illumina [8896142] (imputed)	N
2149	chr1	205112910	205112911	rs3795556	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	1q32.1	DSTYK	rs3795556-?	NR	2E-8	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
2149	chr1	205114664	205114665	rs12137465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.1	DSTYK	rs12137465-T	0.653451	2E-10		0.01869811	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2149	chr1	205114872	205114873	rs12048743	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q32.1	NR	rs12048743-G	0.4399	2E-12		0.0324	[0.023-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2149	chr1	205114872	205114873	rs12048743	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q32.1	DSTYK	rs12048743-G	0.4417	4E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	1q32.1	DSTYK	rs3851294-A	0.083492	2E-82				Affymetrix, Illumina [NR] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q32.1	NR	rs3851294-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	1q32.1	DSTYK	rs3851294-G	0.9121	4E-11		0.0338	[0.024-0.044] unit increase	Affymetrix, Illumina [at least 228985]	N
2150	chr1	205130412	205130413	rs3851294	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	1q32.1	DSTYK	rs3851294-G	0.9063	4E-11		0.0345	[0.024-0.045] unit increase	Affymetrix, Illumina [at least 228985]	N
2150	chr1	205130412	205130413	rs3851294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q32.1		rs3851294-?	NR	9E-111				NR [~ 8900000] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q32.1	NR	rs3851294-G	0.9	2E-15		0.025	[0.019-0.031] unit increase	Affymetrix [2446094] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q32.1	NR	rs3851294-G	0.9	5E-8				Affymetrix [2446094] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q32.1	DSTYK	rs3851294-A	0.0913	4E-9		0.0201	[0.013-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2150	chr1	205130412	205130413	rs3851294	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q32.1	NR	rs3851294-A	0.0964	1E-11		0.0208	[0.015-0.027] unit decrease	NR [~ 27400000] (imputed)	N
2150	chr1	205140435	205140436	rs12123922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.1	DSTYK	rs12123922-A	0.441056	1E-33		0.027988406	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205140435	205140436	rs12123922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q32.1	DSTYK	rs12123922-A	0.441049	3E-42		0.030438805	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205144362	205144363	rs11579220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1q32.1	DSTYK	rs11579220-T	0.4382	1E-14		0.02707159	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205144362	205144363	rs11579220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1q32.1	DSTYK	rs11579220-T	0.4382	2E-15		0.02771084	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205145422	205145423	rs3925316	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q32.1	CNTN2, RBBP5, DSTYK, TMCC2, NUAK2, KLHDC8A	rs3925316-?	NR	4E-11	(female)	0.0226425	[0.016-0.029] unit increase	Affymetrix [25921788] (imputed)	N
2150	chr1	205146725	205146726	rs10900457	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	1q32.1	CNTN2, RBBP5, DSTYK, TMCC2	rs10900457-?	NR	1E-8		0.0143457	[0.0094-0.0193] unit increase	Affymetrix [25921788] (imputed)	N
2150	chr1	205149589	205149590	rs10900460	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q32.1	DSTYK	rs10900460-T	0.181	9E-11		0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2150	chr1	205163797	205163798	rs12078075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs12078075-A	0.912761	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
2150	chr1	205163797	205163798	rs12078075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.1		rs12078075-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2150	chr1	205167327	205167328	rs12132194	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	1q32.1		rs12132194-A	0.556	8E-15				Affymetrix [10369434] (imputed)	N
2150	chr1	205171244	205171245	rs375980630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q32.1	NR	rs375980630-I	0.44161	8E-43		0.029227	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
2150	chr1	205179996	205179997	rs17345153	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q32.1		rs17345153-G	0.42	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
2150	chr1	205180409	205180410	rs76872152	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.1	DSTYK	rs76872152-A	0.062	5E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
2150	chr1	205181061	205181062	rs2369633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.1	DSTYK	rs2369633-T	NR	3E-11		0.0322112	[0.023-0.042] unit decrease	Affymetrix [319769] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.1	DSTYK	rs2369633-T	NR	5E-11		0.0319722	[0.022-0.041] unit decrease	Affymetrix [319769] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q32.1	DMRTA2, FAF1, CDKN2C	rs2369633-?		3E-8				NR [7428630] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1q32.1	DSTYK	rs2369633-T	0.0831	1E-8		1.0951	NR	Affymetrix, Illumina [NR] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.1	NR	rs2369633-T	0.0918001	4E-15		0.0108254	[0.008-0.0136] unit increase	Affymetrix [16582909] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.1	NR	rs2369633-T	0.0918001	1E-10		0.00974639	[0.0066-0.0129] unit increase	Affymetrix [16582965] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1q32.1	DSTYK	rs2369633-T	0.09145	2E-54		1.213	NR	Affymetrix [9154080] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q32.1	NR	rs2369633-T	0.0953	3E-16		0.0253	[0.019-0.031] unit decrease	NR [~ 27400000] (imputed)	N
2150	chr1	205181061	205181062	rs2369633	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	1q32.1	DSTYK	rs2369633-T	0.089	6E-61		0.074	[0.064-0.084] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
2150	chr1	205182562	205182563	rs6664706	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs6664706-T	0.422037	3E-36				Affymetrix, Illumina [22063850] (imputed)	N
2150	chr1	205182562	205182563	rs6664706	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q32.1	NR	rs6664706-T	0.409417	1E-37		0.024365	[0.021-0.028] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2150	chr1	205182864	205182865	rs12140703	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q32.1	DSTYK	rs12140703-C	0.3992	3E-13		0.02678391	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205182871	205182872	rs12137294	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q32.1	DSTYK	rs12137294-C	0.5907	2E-12		0.02527957	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205186205	205186206	rs73083129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q32.1		rs73083129-C	NR	3E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2150	chr1	205199199	205199200	rs10793727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q32.1		rs10793727-G	NR	2E-13		0.0261	[0.019-0.033] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2150	chr1	205199199	205199200	rs10793727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	TMCC2	rs10793727-G	0.878975	2E-57		0.057129156	[0.05-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.1		rs61823972-C	NR	9E-54		0.0341	[0.03-0.038] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q32.1		rs61823972-C	0.112207	2E-8		0.0316774	[0.021-0.043] unit increase	Illumina [13476266] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q32.1		rs61823972-C	NR	7E-17		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.1		rs61823972-C	NR	2E-74		0.0403	[0.036-0.045] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1q32.1		rs61823972-C	0.112263	2E-12		0.0400723	[0.029-0.051] unit increase	Illumina [13476299] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	TMCC2	rs61823972-C	0.413467	2E-65		0.0381196	[0.034-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs61823972-C	0.349272	2E-92				Affymetrix, Illumina [24246363] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.1	NR	rs61823972-C	0.412163	2E-89		0.03672	[0.033-0.04] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs61823972-C	0.343628	6E-47				Affymetrix, Illumina [21126107] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs61823972-C	0.345901	4E-134				Affymetrix, Illumina [20825802] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q32.1	NR	rs61823972-C	0.413607	2E-127		0.046644	[0.043-0.05] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs61823972-?	NR	3E-106				NR [~ 8900000] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.1	TMCC2	rs61823972-C	0.4143	4E-20		0.03274102	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1q32.1	TMCC2	rs61823972-C	0.4143	2E-20		0.03242679	[0.026-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q32.1	TMCC2	rs61823972-C	0.4144	2E-33		0.04307093	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q32.1	TMCC2	rs61823972-C	0.4142	5E-27		0.03856732	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205201324	205201325	rs61823972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q32.1	TMCC2	rs61823972-C	0.4142	1E-23		0.03629142	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205205071	205205072	rs4951179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.1	RP11-383G10.5, TMCC2	rs4951179-C	0.616878	1E-15		0.019806104	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205205080	205205081	rs11240396	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1q32.1	DSTYK	rs11240396-T	0.121281	1E-8				Affymetrix, Illumina [NR] (imputed)	N
2150	chr1	205205650	205205651	rs896319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q32.1	NR	rs896319-T	0.911708	3E-13		0.024692	[0.018-0.031] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2150	chr1	205209744	205209745	rs896322	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.1	TMCC2	rs896322-G	0.8786	7E-76		0.1017926	[0.091-0.113] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205216109	205216110	rs17417252	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q32.1	NR	rs17417252-A	0.74252	5E-9		0.0141848	[0.0094-0.0189] unit decrease	NR [NR]	N
2150	chr1	205216572	205216573	rs748012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.1	TMCC2	rs748012-A	0.395386	4E-31		0.026080891	[0.022-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205216572	205216573	rs748012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.1		rs748012-?	NR	3E-37				NR [~ 8900000] (imputed)	N
2150	chr1	205218424	205218425	rs4400674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q32.1	TMCC2	rs4400674-A	0.398414	2E-47		0.0326511	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205220717	205220718	rs1172152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q32.1	TMCC2	rs1172152-A	0.398466	8E-44		0.032684803	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205224757	205224758	rs1172149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q32.1	TMCC2	rs1172149-G	0.6177	4E-11		0.02437931	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205225456	205225457	rs1172147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.1	TMCC2	rs1172147-A	0.39836	2E-23		0.022644015	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205225456	205225457	rs1172147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.1	TMCC2	rs1172147-A	0.398369	2E-34		0.027700331	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205225456	205225457	rs1172147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q32.1	TMCC2	rs1172147-A	0.398379	3E-58		0.036386173	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205226287	205226288	rs1172113	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q32.1		rs1172113-T	0.587	3E-49		0.16	[-0.19--0.14] % decrease	Affymetrix [NR] (imputed)	N
2150	chr1	205226287	205226288	rs1172113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q32.1	TMCC2	rs1172113-C	0.410442	5E-39		0.0293323	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205226287	205226288	rs1172113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.1	TMCC2	rs1172113-C	0.410479	1E-37		0.036092132	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205226287	205226288	rs1172113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q32.1	NR	rs1172113-C	0.410613	6E-47		0.029183	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2150	chr1	205227759	205227760	rs1151786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q32.1	TMCC2	rs1151786-C	0.3734	4E-10		0.02309565	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205227759	205227760	rs1151786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q32.1	TMCC2	rs1151786-C	0.3734	4E-20		0.03390294	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205235780	205235781	rs1668874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.1	TMCC2	rs1668874-A	0.121528	2E-20		0.031249631	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205235989	205235990	rs1668873	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	1q32.1	TMCC2	rs1668873-G	NR	1E-20		0.01	[0.01-0.014] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
2150	chr1	205237136	205237137	rs1668871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.1		rs1668871-C	NR	1E-98		0.0453	[0.041-0.049] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2150	chr1	205237136	205237137	rs1668871	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	1q32.1		rs1668871-C	0.288554	2E-10		2.6689973	[1.85-3.49] unit increase	NR [NR]	N
2150	chr1	205237136	205237137	rs1668871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs1668871-C	0.32297	3E-141				Affymetrix, Illumina [24588908] (imputed)	N
2150	chr1	205237136	205237137	rs1668871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	1q32.1	NR	rs1668871-T	0.840958	6E-12		0.12791	[0.091-0.164] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
2150	chr1	205237136	205237137	rs1668871	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	1q32.1	TMCC2	rs1668871-C	NR	3E-14		2.804	[2.08-3.53] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2150	chr1	205240144	205240145	rs1768584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q32.1		rs1768584-A	0.614	8E-59				Affymetrix [10369434] (imputed)	N
2150	chr1	205240144	205240145	rs1768584	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	1q32.1		rs1768584-A	0.3776	4E-7		0.0807	[0.05-0.112] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2150	chr1	205240144	205240145	rs1768584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1	TMCC2	rs1768584-G	0.386984	3E-63		0.0407423	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205240144	205240145	rs1768584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.1	TMCC2	rs1768584-G	0.386992	7E-352		0.09732809	[0.093-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205240912	205240913	rs9659978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q32.1	TMCC2	rs9659978-G	0.9090335	2E-16		0.033025865	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205241658	205241659	rs17728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.1	TMCC2	rs17728-C	0.9090139	1E-10		0.026856955	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205243760	205243761	rs16855332	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	1q32.1		rs16855332-T	0.0644	1E-9		0.2224	[0.15-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2150	chr1	205244952	205244953	rs1172130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.1	NR	rs1172130-A	0.385378	3E-139		0.048726	[0.045-0.053] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2150	chr1	205244952	205244953	rs1172130	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	1q32.1	TMCC2	rs1172130-G	NR	4E-27		0.011	[0.009-0.013] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2150	chr1	205244971	205244972	rs1172129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.1	TMCC2	rs1172129-A	0.3879	1E-210		0.1144109	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.1		rs1172128-G	NR	8E-10		0.0264	[0.018-0.035] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q32.1	NR	rs1172128-G	NR	2E-13		0.0321	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.1	TMCC2	rs1172128-G	0.9165472	6E-14		0.02981203	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q32.1	TMCC2	rs1172128-G	0.9165511	1E-13		0.029554738	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.1	TMCC2	rs1172128-G	0.9165023	6E-10		0.025670934	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2150	chr1	205245232	205245233	rs1172128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.1		rs1172128-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2150	chr1	205246060	205246061	rs1172137	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q32.1		rs1172137-G	0.612	3E-26				Affymetrix [10369434] (imputed)	N
2150	chr1	205247159	205247160	rs1172135	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	1q32.1	NR	rs1172135-G	0.893806	2E-11		0.044991	[0.032-0.058] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
2150	chr1	205247159	205247160	rs1172135	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	1q32.1	TMCC2, NUAK2	rs1172135-?	NR	1E-10		0.04488	[0.031-0.059] unit increase novel	Illumina [6108953] (imputed)	N
2150	chr1	205249449	205249450	rs9660992	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q32.1	NR	rs9660992-?	NR	5E-6				NR [2500000] (imputed)	N
2150	chr1	205249449	205249450	rs9660992	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	1q32.1	CNTN2, RBBP5, RIPK5, TMCC2	rs9660992-A	0.57	3E-13		0.11	[NR] unit increase	Illumina [476395]	N
2150	chr1	205250474	205250475	rs55673946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.1		rs55673946-C	0.371727	2E-20		0.02100217	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205250474	205250475	rs55673946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.1		rs55673946-C	0.371853	3E-50		0.034228347	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
2150	chr1	205253838	205253839	rs3851296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs3851296-A	0.572425	2E-625				Affymetrix, Illumina [17210439] (imputed)	N
2151	chr1	205261426	205261427	rs1172123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.1		rs1172123-G	0.122931	1E-20		0.033528488	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2151	chr1	205264535	205264536	rs11240408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q32.1	intergenic	rs11240408-T	0.6245	1E-34		0.04645696	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2151	chr1	205297879	205297880	rs55966786	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q32.1		rs55966786-G	0.928	9E-16				Affymetrix [10369434] (imputed)	N
2151	chr1	205312279	205312280	rs7549293	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q32.1	NUAK2, KLHDC8A	rs7549293-?		8E-13				Affymetrix, Illumina [NR] (imputed)	N
2151	chr1	205357142	205357143	rs6686635	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	1q32.1	LEMD1	rs6686635-G	NR	5E-8		0.528	[0.34-0.72] unit increase	NR [11024754] (imputed)	N
2151	chr1	205375730	205375731	rs11240469	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	1q32.1	LEMD1	rs11240469-?	NR	5E-6	(conditioned on rs168622)	0.09	[0.051-0.129] unit decrease	Affymetrix [9346801] (imputed)	N
2151	chr1	205375730	205375731	rs11240469	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	1q32.1	LEMD1	rs11240469-?	NR	6E-6	(conditioned on rs4814175)	0.024	[0.014-0.034] unit decrease	Affymetrix [9346801] (imputed)	N
2151	chr1	205383117	205383118	rs76385342	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1q32.1		rs76385342-G	0.969089	2E-6		0.0365591	[0.022-0.052] unit decrease	Illumina [13900000] (imputed)	N
2151	chr1	205387933	205387934	rs6695325	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	1q32.1		rs6695325-T	NR	2E-6		0.13487864	[0.079-0.19] decrease	Illumina [6334277] (imputed)	N
2152	chr1	205416663	205416664	rs34277475	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1q32.1	BLACAT1	rs34277475-A	0.1978	6E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2152	chr1	205449656	205449657	rs143065145	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena torques abundance in stool	5,959 Finnish ancestry individuals	NA	1q32.1		rs143065145-T	0.0120533	5E-8		0.352584	[0.23-0.48] unit increase	Illumina [7980478] (imputed)	N
2152	chr1	205458162	205458163	rs6680582	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	1q32.1	PCTK3	rs6680582-A	0.072	5E-7		0.01	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2152	chr1	205461222	205461223	rs11240492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q32.1		rs11240492-C	NR	8E-13		0.0235	[0.017-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2152	chr1	205461222	205461223	rs11240492	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q32.1	NR	rs11240492-C	NR	1E-14		0.0273	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2152	chr1	205483594	205483595	rs12127944	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q32.1	NR	rs12127944-C	0.911226779053085	4E-6	(IGP75)	0.3151	[0.18-0.45] unit increase	Illumina [~ 2500000] (imputed)	N
2152	chr1	205483594	205483595	rs12127944	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q32.1	NR	rs12127944-C	0.911099744252874	6E-6	(IGP74)	0.3115	[0.18-0.45] unit increase	Illumina [~ 2500000] (imputed)	N
2152	chr1	205484072	205484073	rs11240503	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	1q32.1		rs11240503-A	0.3	8E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
2152	chr1	205484372	205484373	rs138760780	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	1q32.1	CDK18	rs138760780-T	0.018	9E-6	(EA)	3.48	[NR]	Illumina [6728637] (imputed)	N
2152	chr1	205484372	205484373	rs138760780	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	1q32.1	CDK18	rs138760780-T	0.018	2E-6		2.6	[1.75-3.85]	Illumina [6728637] (imputed)	N
2152	chr1	205509297	205509298	rs181502228	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	1q32.1	DSTYK	rs181502228-T	0.012	2E-6		4.35	[2.35-8.07]	Illumina [580483] (imputed)	N
2153	chr1	205528633	205528634	rs6688499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q32.1		rs6688499-T	NR	6E-10		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2153	chr1	205537857	205537858	rs12024377	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q32.1	MFSD4A	rs12024377-A	0.4281	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2153	chr1	205537857	205537858	rs12024377	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q32.1	MFSD4A	rs12024377-A	0.3697	3E-7		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2153	chr1	205541514	205541515	rs12035608	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.1	NR	rs12035608-?	NR	5E-6		4.581	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2153	chr1	205560813	205560814	rs115752428	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.1		rs115752428-A	0.0227	1E-8		0.482	[0.32-0.65] unit increase	Illumina [18030777] (imputed)	N
2153	chr1	205563161	205563162	rs3795550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q32.1		rs3795550-T	NR	8E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2153	chr1	205563161	205563162	rs3795550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.1		rs3795550-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2153	chr1	205606072	205606073	rs74144434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.1		rs74144434-G	NR	1E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2153	chr1	205630892	205630893	rs3761916	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q32.1		rs3761916-A	0.719334	1E-8		0.0256403	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2153	chr1	205632217	205632253	rs72434280	28471803	Choe EK	2017-05-03	Eur J Cancer Prev	Search for genetic factor association with cancer-free prostate-specific antigen level elevation on the basis of a genome-wide association study in the Korean population.	Elevated serum prostate-specific antigen levels in healthy men	2,841 Korean ancestry individuals	1,283 Korean ancestry individuals	1q32.1	SLC45A3	rs72434280-?	NR	3E-20		0.2333	[NR] unit increase	Affymetrix [584061]	N
2153	chr1	205632219	205632255	rs71152447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q32.1		rs71152447-G	NR	4E-18		0.0749	[0.058-0.092] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
2153	chr1	205636333	205636334	rs4951018	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	1q32.1	SLC45A3	rs4951018-C	0.22	1E-8		0.0394282	[0.027-0.052] unit increase	Affymetrix [10109774] (imputed)	N
2153	chr1	205638221	205638222	rs12409639	23269536	Sun J	2012-12-27	Hum Genet	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	1q32.1	SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569	rs12409639-A	0.11	2E-19		0.2	[NR] % increase	Illumina [> 709211] (imputed)	N
2153	chr1	205638463	205638464	rs16856139	24919509	Terao C	2014-06-11	J Med Genet	A genome-wide association study of serum levels of prostate-specific antigen in the Japanese population.	Prostate-specific antigen levels	1,086 Japanese ancestry males	1,302 Japanese ancestry males	1q32.1	SLC45A3	rs16856139-?	NR	2E-11		0.084	[0.059-0.109] unit increase	Illumina [303283]	N
2153	chr1	205642389	205642390	rs4951254	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	1q32.1	SLC45A3	rs4951254-?	NR	3E-15		0.04567	[0.034-0.057] unit increase novel	Illumina [6108953] (imputed)	N
2153	chr1	205642789	205642790	rs2153904	25434496	Kim S	2014-11-27	Gene	Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.	Prostate-specific antigen levels	554 Korean ancestry individuals	1,575 Korean ancestry individuals	1q32.1	SLC45A3	rs2153904-C	0.5	1E-13		0.13	[0.091-0.169] unit decrease	Affymetrix [2163106] (imputed)	N
2153	chr1	205644847	205644848	rs1418549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	1q32.1	NR	rs1418549-G	0.444768	2E-24		0.052496	[0.042-0.063] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
2153	chr1	205645062	205645063	rs4951255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q32.1		rs4951255-A	NR	4E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2153	chr1	205646457	205646458	rs1418652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.1	NR	rs1418652-C	0.386136	7E-12		0.00593493	[0.0043-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
2153	chr1	205646457	205646458	rs1418652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q32.1	NR	rs1418652-C	0.386157	3E-8		0.00712375	[0.0047-0.0096] unit increase	Affymetrix [16585854] (imputed)	N
2153	chr1	205646457	205646458	rs1418652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.1	NR	rs1418652-C	0.386136	4E-7		0.00503755	[0.0032-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
2153	chr1	205649172	205649173	rs6689008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	1q32.1		rs6689008-C	0.549344	2E-22		0.0443365	[0.035-0.053] unit increase	Illumina [13469940] (imputed)	N
2154	chr1	205653055	205653056	rs11582805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q32.1	SLC45A3	rs11582805-T	0.460216	1E-17		0.018984554	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2154	chr1	205653260	205653261	rs28721375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1q32.1	SLC45A3	rs28721375-C	0.7406	2E-10		0.02489375	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
2154	chr1	205653755	205653756	rs6685188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1q32.1	SLC45A3	rs6685188-C	0.7656	5E-12		0.02805518	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2154	chr1	205653755	205653756	rs6685188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1q32.1	SLC45A3	rs6685188-C	0.7656	9E-12		0.02750701	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
2154	chr1	205655377	205655378	rs1094647	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	1q32.1	SLC45A3	rs1094647-G	0.55	2E-6		0.036	[0.02-0.052] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
2154	chr1	205655377	205655378	rs1094647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q32.1		rs1094647-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2154	chr1	205666271	205666272	rs75506911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1q32.1	NUCKS1	rs75506911-T	0.1239	8E-6		0.044	[0.025-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2154	chr1	205669321	205669322	rs823099	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.1		rs823099-C	0.562	1E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
2154	chr1	205669321	205669322	rs823099	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	1q32.1	NR	rs823099-A	0.417	3E-8		0.010231842	[0.0066-0.0138] unit increase	Affymetrix [NR] (imputed)	N
2154	chr1	205669321	205669322	rs823099	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q32.1	NR	rs823099-A	0.427	4E-10		0.00682113	[0.0047-0.009] unit increase	NR [9732723] (imputed)	N
2154	chr1	205676262	205676263	rs12748961	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	1q32.1	SLC45A3, NUKS1	rs12748961-T	0.51	4E-8	(basophil count)	0.064	[0.04-0.08] unit increase	Illumina [2178645] (imputed)	N
2154	chr1	205677147	205677148	rs3747973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q32.1	NR	rs3747973-G	NR	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
2154	chr1	205677147	205677148	rs3747973	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q32.1	NUCKS1	rs3747973-A	0.407456	3E-13		0.0141432	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
2154	chr1	205677147	205677148	rs3747973	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q32.1	NUCKS1	rs3747973-A	0.407445	1E-13		0.014824	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
2154	chr1	205677147	205677148	rs3747973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.1		rs3747973-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2154	chr1	205678125	205678126	rs16856186	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	1q32.1	intergenic	rs16856186-?	NR	9E-6	(FEV1 decline in asthmatics)	0.2684	[0.15-0.39] unit increase	Illumina [~ 2500000] (imputed)	N
2154	chr1	205678480	205678481	rs55735020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q32.1		rs55735020-G	NR	6E-20		0.0158	[0.012-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2154	chr1	205679393	205679394	rs192109529	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q32.1	Intergenic	rs192109529-C	0.999	2E-6	(AA)	0.371	unit increase	Illumina [NR] (imputed)	N
2154	chr1	205683354	205683355	rs3805	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1q32.1	NUCKS1	rs3805-T		4E-11		0.132	[0.093-0.171] unit decrease	Illumina [NR]	N
2154	chr1	205684066	205684067	rs10900522	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	1q32.1	NR	rs10900522-?	NR	1E-7				NR [1800000]	N
2154	chr1	205685351	205685352	rs951366	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals			NUCKS1	rs951366-C	0.3927	2E-9		0.0500651	[0.034-0.066] unit decrease	Affymetrix [8165723] (imputed)	N
2154	chr1	205685351	205685352	rs951366	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals		NUCKS1	rs951366-T	0.62	6E-8		0.037	unit increase (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
2154	chr1	205685351	205685352	rs951366	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA		NUCKS1	rs951366-C	0.39	8E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2154	chr1	205685351	205685352	rs951366	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA		NUCKS1, RAB7L1	rs951366-T	0.6	2E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2154	chr1	205686523	205686523	rs34305872	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	1q32.1	NR	rs34305872-GT	0.428136	2E-8		0.0560632	[0.037-0.076] unit decrease	Affymetrix [21375087] (imputed)	N
2154	chr1	205686530	205686530	rs386369425	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1q32.1	NUCKS1	rs386369425-G	0.5714	7E-6		0.0291	[0.016-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2154	chr1	205689806	205689807	rs823094	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	1q32.1	NUCKS1, RAB7L1	rs823094-G	0.43	2E-7	(Single Height)	0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2154	chr1	205691315	205691316	rs4951258	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	1q32.1	NUCKS1, SLC41A1	rs4951258-A	0.416	2E-8		1.04	[1.02-1.05]	Illumina [34740186] (imputed)	N
2154	chr1	205696614	205696615	rs1775154	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	1q32.1	NUCKS1	rs1775154-A	0.43	6E-7		0.45	[0.27-0.63] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2154	chr1	205712529	205712530	rs188212039	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	1q32.1	NR	rs188212039-G	0.998	5E-6		1.792	[1.02-2.56] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
2154	chr1	205713377	205713378	rs823128	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	1q32.1	PARK16, NUCKS1	rs823128-A	0.97	7E-8		1.52	[NR]	Illumina [463185]	N
2154	chr1	205714477	205714478	rs12046305	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q32.1	NUCKS1	rs12046305-A	0.26	5E-12		6.91	z-score increase	Affymetrix [4311822] (imputed)	N
2154	chr1	205714616	205714617	rs55737937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q32.1		rs55737937-C	NR	8E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2154	chr1	205717822	205717823	rs4951261	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	1q32.1	NUCKS1	rs4951261-C	0.38	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2154	chr1	205718857	205718858	rs7536483	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.1	NUCKS1	rs7536483-A	0.5726	7E-33		0.0226	[0.019-0.026] unit increase	Affymetrix [18391927] (imputed)	N
2154	chr1	205719531	205719532	rs823114	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	1q32.1	NR	rs823114-A	0.553	2E-11		0.00893543	[0.0063-0.0115] unit increase	NR [~ 9732723] (imputed)	N
2154	chr1	205719531	205719532	rs823114	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	1q32.1	NR	rs823114-A	0.553	2E-9		0.00876774	[0.0059-0.0116] unit increase	NR [~ 10000000] (imputed)	N
2154	chr1	205719531	205719532	rs823114	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q32.1	intergenic	rs823114-A	0.4983	5E-12		0.0151	[0.011-0.019] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2154	chr1	205719531	205719532	rs823114	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q32.1	NUCKS1	rs823114-A	0.53	4E-8		0.013	[0.0091-0.0169] unit decrease	Illumina [6108953] (imputed)	N
2154	chr1	205719531	205719532	rs823114	24842889	Vacic V	2014-05-19	Hum Mol Genet	Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.	Parkinson's disease	1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls	306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls	1q32.1	PARK16	rs823114-?	0.59	3E-6		1.33	[1.20-1.47]	Affymetrix, Illumina [1069161] (imputed)	N
2154	chr1	205723571	205723572	rs823118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q32.1		rs823118-T	NR	2E-15		0.0131	[0.01-0.0162] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2154	chr1	205723571	205723572	rs823118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	1q32.1		rs823118-T	0.512855	4E-8		0.0148525	[0.0096-0.0201] unit decrease	Illumina [13479924] (imputed)	N
2154	chr1	205723571	205723572	rs823118	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q32.1	NUCKS1	rs823118-T	0.566	1E-29		0.1066	[0.088-0.125] unit increase	NR [7784415] (imputed)	N
2154	chr1	205723571	205723572	rs823118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs823118-?	NR	1E-34				NR [~ 8900000] (imputed)	N
2154	chr1	205723571	205723572	rs823118	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	1q32.1	NUCKS1, SLC41A1	rs823118-T	0.557	1E-23		1.1235955	[1.1-1.15]	Illumina [11933700] (imputed)	N
2154	chr1	205723571	205723572	rs823118	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	1q32.1	RAB7L1, NUCKS1	rs823118-?	NR	6E-12		1.117	[1.082-1.153]	Illumina [12438219] (imputed)	N
2154	chr1	205723571	205723572	rs823118	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	1q32.1	NUCKS1, RAB7L1	rs823118-T	0.559	2E-16		1.122	[1.09-1.15]	Illumina [7893274] (imputed)	N
2154	chr1	205724278	205724279	rs138568057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q32.1		rs138568057-G	NR	4E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
2154	chr1	205724301	205724302	rs823121	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q32.1	NR	rs823121-A	0.4285	1E-17				NR [9056863] (imputed)	N
2154	chr1	205725345	205725346	rs823123	25434496	Kim S	2014-11-27	Gene	Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.	Prostate-specific antigen levels	554 Korean ancestry individuals	1,575 Korean ancestry individuals	1q32.1	NUCKS1, RAB7L1	rs823123-G	0.16	5E-13		0.19	[0.13-0.25] unit increase	Affymetrix [2163106] (imputed)	N
2154	chr1	205730572	205730573	rs56276813	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q32.1	RAB29	rs56276813-G	0.732157	2E-14		0.00201918	[0.0015-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
2154	chr1	205730804	205730805	rs115881766	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	1q32.1		rs115881766-T	NR	9E-7		0.21023993	[0.13-0.3] decrease	Illumina [6334277] (imputed)	N
2154	chr1	205735611	205735612	rs2014202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q32.1		rs2014202-A	NR	2E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2154	chr1	205737738	205737739	rs11557080	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q32.1	RAB29	rs11557080-A	0.1389	3E-22		0.1315	[0.11-0.16] unit increase	NR [7784415] (imputed)	N
2154	chr1	205739265	205739266	rs708723	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	1q32.1	NR	rs708723-C	NR	5E-14		1.05	[1.04-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
2154	chr1	205739381	205739382	rs78087596	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.1	NR	rs78087596-A	0.053506000000000054	7E-11		0.0125672	[0.0089-0.0162] unit increase	Affymetrix [16582909] (imputed)	N
2154	chr1	205739381	205739382	rs78087596	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.1	NR	rs78087596-A	0.053506000000000054	9E-8		0.0114078	[0.0073-0.0155] unit increase	Affymetrix [16582965] (imputed)	N
2154	chr1	205741425	205741426	rs823141	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	1q32.1	NR	rs823141-C	0.4217	2E-6		1.17	[1.10-1.25]	Affymetrix [at least 416462] (imputed)	N
2154	chr1	205743424	205743425	rs823143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q32.1	RAB7L1	rs823143-C	0.4311	4E-10		0.02229253	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2154	chr1	205744217	205744218	rs1572931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q32.1		rs1572931-T	NR	5E-8		0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
2154	chr1	205748994	205748995	rs863724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.1	RAB7L1, SLC41A1	rs863724-G	0.919032	3E-8	(-156 ms)	0.0616798	[0.04-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
2154	chr1	205752664	205752665	rs947211	19915576	Satake W	2009-11-15	Nat Genet	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	1q32.1	SLC45A3, PARK16, PM20D1, NUCKS1, RAB7L1, SLC41A1	rs947211-?	NR	2E-12		1.3	[1.21-1.39]	Illumina [435470]	N
2154	chr1	205753807	205753808	rs1772157	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1q32.1	NR	rs1772157-T	0.3287	3E-7		0.7722	[0.48-1.07] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2154	chr1	205756483	205756484	rs6679073	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	1q32.1	PARK16	rs6679073-?	NR	4E-21				Illumina [5843213] (imputed)	N
2154	chr1	205756483	205756484	rs6679073	25434496	Kim S	2014-11-27	Gene	Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.	Prostate-specific antigen levels	554 Korean ancestry individuals	1,575 Korean ancestry individuals	1q32.1	SLC41A1	rs6679073-C	0.5	4E-15		0.15	[0.11-0.19] unit decrease	Affymetrix [2163106] (imputed)	N
2154	chr1	205757823	205757824	rs1775148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	1q32.1		rs1775148-T	0.498971	2E-9		0.021161	[0.014-0.028] unit decrease	Illumina [13475706] (imputed)	N
2154	chr1	205757823	205757824	rs1775148	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	1q32.1	SLC41A1	rs1775148-C	0.27	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
2154	chr1	205764639	205764640	rs823156	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	1q32.1	SLC41A1	rs823156-G	0.17	9E-7		1.1494253	[1.09-1.2]	Affymetrix, Illumina [16531985] (imputed)	N
2154	chr1	205764639	205764640	rs823156	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	1q32.1	SLC41A1	rs823156-A	0.82	1E-7		1.21	[1.12-1.30]	Illumina [522782]	N
2154	chr1	205767884	205767885	rs708727	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q32.1	SLC41A1	rs708727-A	0.4172	1E-10		0.02326757	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2154	chr1	205774155	205774156	rs823073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.1	SLC41A1	rs823073-C	0.9473008	1E-11		0.033982564	[0.024-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
2154	chr1	205774838	205774839	rs823074	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.1		rs823074-C	0.4	2E-23		9.98	z score increase	Affymetrix [9061022] (imputed)	N
2154	chr1	205774838	205774839	rs823074	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q32.1		rs823074-C	0.4	3E-19		8.96	z score increase	Affymetrix [9061022] (imputed)	N
2154	chr1	205774838	205774839	rs823074	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q32.1	NR	rs823074-C	0.4136	1E-17				NR [9056863] (imputed)	N
2154	chr1	205782717	205782718	rs9438393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.1	SLC41A1	rs9438393-G	0.414371	7E-17		0.018684044	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2154	chr1	205782717	205782718	rs9438393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs9438393-G	0.399168	2E-22				Affymetrix, Illumina [23467995] (imputed)	N
2154	chr1	205782717	205782718	rs9438393	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q32.1	SLC41A1	rs9438393-A	0.585662	3E-13		0.0103485	[0.0076-0.0131] unit increase	Affymetrix [12370749]	N
2155	chr1	205789281	205789282	rs823080	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	1q32.1		rs823080-?	NR	1E-10				NR [9705931] (imputed)	N
2155	chr1	205789281	205789282	rs823080	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q32.1	CPT2, C1orf123, MAGOH, LRP8	rs823080-?		3E-16				NR [7428630] (imputed)	N
2155	chr1	205789281	205789282	rs823080	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q32.1	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs823080-?		2E-20				NR [7428630] (imputed)	N
2155	chr1	205789454	205789455	rs7538321	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q32.1	NR	rs7538321-T	0.1253	1E-9		0.042	[0.028-0.056] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2155	chr1	205789454	205789455	rs7538321	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs7538321-T	0.1952	2E-8		0.0287	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2155	chr1	205799986	205799987	rs1772143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q32.1		rs1772143-A	0.39	5E-24		10.11	z score increase	Affymetrix [9061022] (imputed)	N
2155	chr1	205799986	205799987	rs1772143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.1	NR	rs1772143-A	0.413178	8E-26		0.019914	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2155	chr1	205799986	205799987	rs1772143	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.1	NR	rs1772143-?	NR	1E-7		0.0091791	[0.0058-0.0126] unit increase	Affymetrix [805426] (imputed)	N
2155	chr1	205816922	205816923	rs11240576	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	1q32.1	NR	rs11240576-?		4E-6		6.548	[3.93-9.17] unit increase	Illumina [~ 4900000] (imputed)	N
2155	chr1	205859797	205859798	rs12028467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL22RA1	5,368 Icelandic ancestry individuals	NA	1q32.1		rs12028467-C	0.2413	2E-13		0.161777	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
2155	chr1	205880178	205880179	rs74546197	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	1q32.1	SLC26A9	rs74546197-?	NR	3E-6	(Response)	2.17	[NR]	Illumina [~ 7000000] (imputed)	N
2155	chr1	205896234	205896235	rs11240594	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment	738 European ancestry, African American, and other ancestry cases	NA	1q32.1	SLC26A9	rs11240594-?	0.19	1E-7	(Olanzapine, processing speed)			Affymetrix [492900]	N
2155	chr1	205906896	205906897	rs7549173	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	1q32.1	SLC26A9	rs7549173-C	0.39	3E-11		1.37	NR	Illumina [8763019] (imputed)	N
2156	chr1	205914756	205914757	rs4077468	23670970	Blackman SM	2013-05-13	Diabetes	Genetic modifiers of cystic fibrosis-related diabetes.	Cystic fibrosis-related diabetes	644 cystic fibrosis-related diabetes cases, 2,415 cystic fibrosis controls	124 cystic fibrosis-related diabetes cases, 570 cystic fibrosis controls	1q32.1	SLC26A9	rs4077468-A	0.58	1E-9		1.39	[1.25-1.54]	Illumina [549869]	N
2156	chr1	205917210	205917211	rs7419134	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	1q32.1	SLC26A9	rs7419134-A	NR	2E-6		4.726	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2156	chr1	205918019	205918020	rs7418300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs7418300-?	NR	6E-17				NR [~ 8900000] (imputed)	N
2156	chr1	205921858	205921859	rs7413698	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	1q32.1		rs7413698-A	0.53	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2157	chr1	206168188	206168189	rs530059570	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	1q32.1	NR	rs530059570-?	NR	2E-7		0.4082	[0.25-0.56] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
2158	chr1	206289068	206289069	rs76751253	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q32.1	C1orf186	rs76751253-A	0.029351341800565	7E-6	(G_unclassified_O_Bacteroidales_HB)	0.951454	[0.54-1.37] unit increase	Illumina [7711310] (imputed)	N
2161	chr1	206593899	206593900	rs9430095	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q32.1	SRGAP2	rs9430095-C	0.494	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2161	chr1	206618798	206618799	rs2336938	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q32.1	NR	rs2336938-C	0.5162	1E-10		0.0299	[0.021-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2161	chr1	206620172	206620173	rs2336939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q32.1		rs2336939-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2161	chr1	206621027	206621028	rs61817176	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.1	NR	rs61817176-C	0.4527	4E-11		0.0263	[0.018-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2161	chr1	206621258	206621258	rs533169403	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	1q32.1	NR	rs533169403-?		2E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
2161	chr1	206622793	206622793	rs372362333	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q32.1	SRGAP2	rs372362333-C	0.478548	1E-9		1.03767	[1.02534969760914-1.05013828671588]	NR [9572556] (imputed)	N
2161	chr1	206622995	206622996	rs2483061	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q32.1		rs2483061-A	0.19	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
2161	chr1	206623684	206623685	rs12725078	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.1		rs12725078-G	0.26	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
2161	chr1	206624361	206624362	rs4127124	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q32.1	SRGAP2	rs4127124-A	0.49	5E-9				NR [> 9500000] (imputed)	N
2161	chr1	206626827	206626828	rs2483058	23031429	Surakka I	2012-10-03	Twin Res Hum Genet	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Cholesterol and Triglycerides	1,720 European ancestry monozygotic twins	1,261 European ancestry monozygotic twins	1q32.1	SRGAP2	rs2483058-C	NR	9E-7	(HDL)	0.203	[0.13-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
2161	chr1	206634996	206634997	rs12117082	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	IKBKE	rs12117082-?	NR	6E-7	(CE 22:6)	0.19750114	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2161	chr1	206642719	206642720	rs4844538	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	1q32.1	IKBKE	rs4844538-A	0.713	2E-10		1.109	[1.08-1.14]	Illumina [11270530] (imputed)	N
2161	chr1	206643771	206643772	rs2297550	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q32.1	IKBKE	rs2297550-G	0.546	2E-7	(Chinese)	1.14	[1.08-1.20]	NR [6344733] (imputed)	N
2161	chr1	206643771	206643772	rs2297550	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	1q32.1	IKBKE	rs2297550-G	0.12	1E-11		1.16	[1.11-1.21]	NR [6344733] (imputed)	N
2161	chr1	206646273	206646274	rs11117858	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q32.1	RP11-534L20.5	rs11117858-T	0.784	8E-6	(conditional)	0.0287	NR unit decrease	NR [NR]	N
2161	chr1	206648768	206648769	rs4845107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q32.1		rs4845107-G	NR	7E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2161	chr1	206654496	206654497	rs17022427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q32.1		rs17022427-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2161	chr1	206655330	206655331	rs41298997	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	1q32.1	IKBKE	rs41298997-T	0.18	2E-8		1.13		Illumina, Perlegen [9113515] (imputed)	N
2161	chr1	206655362	206655363	rs11118057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q32.1	NR	rs11118057-C	NR	9E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2161	chr1	206655362	206655363	rs11118057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q32.1	NR	rs11118057-C	NR	4E-13		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2161	chr1	206657180	206657181	rs12409804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q32.1	IKBKE	rs12409804-A	0.232473	6E-11		0.017166477	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2161	chr1	206657801	206657802	rs12142086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q32.1	IKBKE	rs12142086-C	0.232373	2E-12		0.018382914	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.1		rs3748022-T	NR	2E-14		0.0196	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q32.1	IKBKE	rs3748022-T	0.223034	6E-11		0.01731557	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.1	IKBKE	rs3748022-T	0.22303	7E-22		0.025453378	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs3748022-T	0.207958	1E-26				Affymetrix, Illumina [23472807] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.1	NR	rs3748022-T	0.221006	2E-27		0.024901	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2161	chr1	206669464	206669465	rs3748022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	1q32.1	IKBKE	rs3748022-T	0.2239	1E-15		0.03459502	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2161	chr1	206699684	206699685	rs150269952	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		1q32.1	RASSF5	rs150269952-T	0.009	6E-6	(liability model)	0.48	[0.26-0.7] unit increase	NR [19725427] (imputed)	N
2162	chr1	206715850	206715851	rs11118993	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	1q32.1	RASSF5	rs11118993-A	0.4787	9E-6	(Ordinal II)	0.2051	[0.11-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2162	chr1	206778641	206778642	rs4077413	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	1q32.1	EIF2D	rs4077413-?	NR	9E-6	(conditioned on rs168622)	0.105	[0.058-0.152] unit increase	Affymetrix [9346801] (imputed)	N
2162	chr1	206796178	206796179	rs4845119	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial maximum volume	35,658 British ancestry individuals	NA	1q32.1		rs4845119-?	NR	8E-9		0.461	[0.3-0.62] mL/m2 decrease	Affymetrix [10600000] (imputed)	N
2163	chr1	206832404	206832405	rs12135940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.1	DYRK3	rs12135940-C	0.418842	3E-13		0.0156221	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2163	chr1	206832960	206832961	rs7512726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.1		rs7512726-T	NR	5E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2163	chr1	206833602	206833603	rs11119256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.1		rs11119256-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2163	chr1	206834810	206834811	rs4845124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs4845124-C	0.339986	7E-17				Affymetrix, Illumina [24246363] (imputed)	N
2163	chr1	206846599	206846600	rs12140898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.1	NR	rs12140898-C	0.400769	3E-17		0.015658	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2163	chr1	206846599	206846600	rs12140898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs12140898-C	0.338205	5E-11				Affymetrix, Illumina [20825802] (imputed)	N
2163	chr1	206846599	206846600	rs12140898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q32.1	NR	rs12140898-C	0.400483	1E-12		0.013932	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2163	chr1	206890434	206890435	rs6669284	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.1	MAPKAPK2	rs6669284-A	0.3493976	4E-13	(EA, MAP kinase-activated protein kinase 2)	0.3261	[0.24-0.41] unit increase	Affymetrix [509946]	N
2163	chr1	206897726	206897727	rs6540574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.1		rs6540574-A	NR	1E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2163	chr1	206902470	206902471	rs45514798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.1	MAPKAPK2	rs45514798-A	0.220359	2E-12		0.018810712	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2163	chr1	206905798	206905799	rs3813961	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q32.1		rs3813961-G	0.011884000000000006	1E-19		1.1803364	[1.14-1.22]	Affymetrix, Illumina [9851866] (imputed)	N
2163	chr1	206911202	206911203	rs17015194	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	1q32.1		rs17015194-?	NR	9E-7				Affymetrix [11524071] (imputed)	N
2163	chr1	206933516	206933517	rs55705316	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	1q32.1	IL10	rs55705316-G	0.14	1E-6				Illumina [7347414] (imputed)	N
2163	chr1	206937244	206937245	rs6673928	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q32.1	MAPKAPK2, IL10	rs6673928-T	0.255	2E-8		0.0233871	[0.015-0.032] unit increase	Illumina [13520550] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	1q32.1	NR	rs3024505-G	0.85	9E-15		0.84	[NR]	NR [8546065] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	1q32.1	IL10	rs3024505-?		2E-23				Illumina [9578670] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q32.1	IL10	rs3024505-?		6E-31				Illumina [9725440] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q32.1	IL10	rs3024505-?		3E-14				Illumina [9560910] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	1q32.1	IL10	rs3024505-?	NR	6E-6		1.4241549	[1.22-1.66]	Illumina [2612357]	N
2163	chr1	206939903	206939904	rs3024505	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1q32.1	IL10	rs3024505-T		5E-9		1.17	[1.11-1.24]	Illumina [644674]	N
2163	chr1	206939903	206939904	rs3024505	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs3024505-A	0.1573	5E-43	(EA)	1.2520686	[1.22-1.28]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs3024505-A	0.1573	4E-25	(EA)	1.1797599	[1.15-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	1q32.1	intergenic	rs3024505-G	0.84	6E-8		1.1627907		Illumina [135870]	N
2163	chr1	206939903	206939904	rs3024505	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	1q32.1	IL20, IL10, IL24, IL19, PIGR, MAPKAPK2, FAIM3, RASSF5	rs3024505-A	0.16	7E-42		1.208	[1.163-1.254]	Affymetrix, Illumina [1230000] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	1q32.1	IL10	rs3024505-G	NR	5E-10		1.2	[NR]	Affymetrix, Illumina [NR]	N
2163	chr1	206939903	206939904	rs3024505	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	1q32.1	IL10, IL19	rs3024505-A	0.16	6E-17		1.25	[1.19-1.32]	Affymetrix, Illumina [~ 1100000] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	1q32.1	IL10, IL19	rs3024505-T	0.157	2E-14		1.12	[1.07-1.17]	Affymetrix, Illumina [953241] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	1q32.1	IL19, IL10	rs3024505-T	NR	1E-8		1.28	[NR]	Illumina [266047]	N
2163	chr1	206939903	206939904	rs3024505	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1q32.1	IL10	rs3024505-A	0.16	4E-8		1.19	[1.11-1.28]	Illumina [~ 2100000] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	1q32.1	IL10	rs3024505-?	0.83	2E-9		1.19	[1.10-1.30]	Affymetrix, Illumina [841622] (imputed)	N
2163	chr1	206939903	206939904	rs3024505	18836448	Franke A	2008-10-05	Nat Genet	Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.	Ulcerative colitis	1,167 European ancestry cases, 777 European ancestry controls	1,855 European ancestry cases, 3,091 European ancestry controls	1q32.1	IL10	rs3024505-T	0.15	1E-12		1.46	[1.31-1.62]	Affymetrix [355262]	N
2163	chr1	206943409	206943410	rs3024508	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q32.1	IL10	rs3024508-C	NR	5E-6		0.0950891	[0.054-0.136] unit decrease	Illumina [13520550] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	1q32.1		rs3024493-A	NR	1E-11		0.1847	[0.13-0.24] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	1q32.1		rs3024493-?	NR	1E-10		0.055	NR unit increase	NR [5896510] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	1q32.1	IL10	rs3024493-?	0.84	5E-10		1.2244399		Illumina [252970]	N
2163	chr1	206943967	206943968	rs3024493	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q32.1	IL10	rs3024493-?	NR	2E-13		1.25	[1.16-1.35]	Illumina [at least 5000000] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q32.1	IL10	rs3024493-?	NR	1E-38	(subset analysis)			Illumina [130052]	N
2163	chr1	206943967	206943968	rs3024493	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q32.1	IL10	rs3024493-A		6E-8		1.2	[NR]	Illumina [> 644674] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	1q32.1	NR	rs3024493-?	NR	2E-50	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	1q32.1	IL10	rs3024493-T	0.16	1E-12		1.35	[1.22-1.50]	Affymetrix [1897764] (imputed)	N
2163	chr1	206943967	206943968	rs3024493	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	1q32.1	IL10	rs3024493-?	NR	8E-8				Affymetrix [NR]	N
2163	chr1	206944644	206944645	rs1518111	20622878	Remmers EF	2010-07-11	Nat Genet	Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behcet's disease.	Behcet's disease	1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	Up to 111 Turkish ancestry cases, 225 Turkish ancestry controls, 189 Middle Eastern Arab ancestry cases, 163 Middle Eastern Arab ancestry controls, 227 European ancestry cases, 203 European ancestry controls, 688 East Asian ancestry cases, 791 East Asian ancestry controls	1q32.1	IL10	rs1518111-?	NR	4E-18		1.45	[1.34-1.58]	Illumina [311459]	N
2163	chr1	206945310	206945311	rs3024490	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	1q32.1	IL10	rs3024490-A	NR	3E-10		1.2648		Illumina [up to 1244428] (imputed)	N
2163	chr1	206946633	206946634	rs1800871	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q32.1		rs1800871-G	0.244271	6E-236		1.1814299	[1.17-1.19]	Affymetrix, Illumina [9851866] (imputed)	N
2163	chr1	206946633	206946634	rs1800871	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	1q32.1	IL10	rs1800871-A	NR	2E-6	(GO:0031461|CC|04|cullin-RING ubiquitin ligase complex)	4.711804	Z-score increase	Illumina [8100000] (imputed)	N
2163	chr1	206946633	206946634	rs1800871	20622879	Mizuki N	2010-07-11	Nat Genet	Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Behcet's disease susceptibility loci.	Behcet's disease	611 Japanese ancestry cases, 737 Japanese ancestry controls	119 Korean ancestry cases, 140 Korean ancestry controls, 1,215 Turkish cases, 1,279 Turkish controls	1q32.1	IL10	rs1800871-T	0.31	1E-14		1.45	[1.32-1.60]	Affymetrix [320438]	N
2163	chr1	206955040	206955041	rs3122605	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	1q32.1	IL10	rs3122605-?	NR	1E-11		1.23	[1.16-1.30]	Illumina [at least 5000000] (imputed)	N
2163	chr1	206958586	206958587	rs17015865	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q32.1		rs17015865-A	0.75302	2E-30		1.0585053	[1.05-1.07]	Affymetrix, Illumina [9851866] (imputed)	N
2163	chr1	206959526	206959527	rs17351243	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	1q32.1	IL10, IL19	rs17351243-A	0.51	1E-6		1.24	[1.14-1.35]	Illumina [at least 106525] (imputed)	N
2163	chr1	206960215	206960216	rs880790	26398853	Ye BD	2016-01-01	Inflamm Bowel Dis	Identification of Ten Additional Susceptibility Loci for Ulcerative Colitis Through Immunochip Analysis in Koreans.	Ulcerative colitis	705 Korean ancestry cases, 1,178 Korean ancestry controls	980 Korean ancestry cases, 2,694 Korean ancestry controls	1q32.1	IL10, IL19	rs880790-T	0.69	4E-6		1.24		Illumina [536821] (imputed)	N
2163	chr1	206961627	206961628	rs12075255	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	1q32.1	intergenic	rs12075255-?	NR	3E-11	(subset analysis)			Illumina [130052]	N
2164	chr1	206968234	206968235	rs11119570	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	1q32.1	IL19, IL10	rs11119570-A	0.396	1E-7				Affymetrix [432921]	N
2164	chr1	206968434	206968435	rs61048992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q32.1		rs61048992-T	NR	4E-8		0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2164	chr1	206968954	206968955	rs11583398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q32.1	IL19	rs11583398-A	0.140462	2E-10		0.020495024	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2164	chr1	206968954	206968955	rs11583398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q32.1	IL19	rs11583398-A	0.14046	7E-12		0.02198928	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2164	chr1	206968954	206968955	rs11583398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.1	NR	rs11583398-A	0.118696	6E-11				Affymetrix, Illumina [19872809] (imputed)	N
2164	chr1	206968954	206968955	rs11583398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q32.1	NR	rs11583398-A	0.140926	1E-12		0.020369	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2164	chr1	206968954	206968955	rs11583398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q32.1		rs11583398-?	NR	9E-14				NR [~ 8900000] (imputed)	N
2164	chr1	206970469	206970470	rs4845140	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q32.1		rs4845140-T	0.963006	8E-38		1.1470033	[1.12-1.17]	Affymetrix, Illumina [9851866] (imputed)	N
2164	chr1	206986925	206986926	rs7521798	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	1q32.1	IL19	rs7521798-C	0.07	4E-6		0.0785	[0.045-0.112] unit decrease	Illumina [6380737] (imputed)	N
2164	chr1	206989110	206989111	rs17016480	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	1q32.1	IL19	rs17016480-C	0.35	4E-6		1.44	[1.54-3.28]	Affymetrix [up to 27494467] (imputed)	N
2164	chr1	207003552	207003553	rs6660520	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q32.1		rs6660520-A	NR	1E-7		5.3083005	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2164	chr1	207009909	207009910	rs2243170	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	1q32.1	IL19	rs2243170-?		7E-7		1.65	[NR]	Illumina [803323]	N
2164	chr1	207032750	207032751	rs574773	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	1q32.1	intergenic	rs574773-T	NR	2E-6	(Trust)	0.197	[0.12-0.28] unit increase	Illumina [628922]	N
2164	chr1	207040613	207040614	rs2232359	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q32.1		rs2232359-G	0.08865699999999999	3E-45		1.1312836	[1.11-1.15]	Affymetrix, Illumina [9851866] (imputed)	N
2165	chr1	207095550	207095551	rs17017836	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.1	PIGR	rs17017836-?	NR	3E-6	(TAG 54:8)	0.49196446	[0.29-0.7] unit increase	Affymetrix [at least 2500000] (imputed)	N
2165	chr1	207102292	207102293	rs13190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIGR	5,367 Icelandic ancestry individuals	NA	1q32.1		rs13190-T	0.4194	3E-42		0.26049	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
2165	chr1	207110935	207110936	rs291096	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	1q32.1	PIGR	rs291096-G	NR	3E-6	(AA)	2.97	[1.88-4.67]	Illumina [at least 756588]	N
2165	chr1	207113754	207113755	rs2007272	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.1	PIGR	rs2007272-G	0.5996875	5E-30	(PIGR, 3216_2_2)	0.28609028	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
2165	chr1	207113754	207113755	rs2007272	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.1	PIGR	rs2007272-C	0.426	1E-16	(Polymeric immunoglobulin receptor, PIGR.3216.2.2)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
2165	chr1	207118227	207118228	rs4844369	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q32.1	PIGR	rs4844369-?		3E-6				Illumina [4322238] (imputed)	N
2165	chr1	207143421	207143422	rs1856746	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	1q32.1	FCAMR	rs1856746-A	NR	2E-6	(AA)	2.96	[1.89-4.64]	Illumina [at least 756588]	N
2165	chr1	207153880	207153881	rs2791713	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	1q32.1	PIGR, FCAMR	rs2791713-G	NR	2E-6	(AA)	3.0	[1.90-4.73]	Illumina [at least 756588]	N
2165	chr1	207211325	207211326	rs11120093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.1	NR	rs11120093-T	NR	2E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
2165	chr1	207211325	207211326	rs11120093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q32.1	NR	rs11120093-T	NR	4E-15		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2165	chr1	207211325	207211326	rs11120093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q32.1	NR	rs11120093-T	NR	8E-15		0.0189	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2165	chr1	207211325	207211326	rs11120093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q32.1	NR	rs11120093-T	NR	1E-15		0.0194	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2165	chr1	207217358	207217359	rs1044145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.1		rs1044145-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2165	chr1	207220799	207220800	rs2629665	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	1q32.1		rs2629665-C	0.591727	1E-28		0.0463008	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2165	chr1	207220799	207220800	rs2629665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.1		rs2629665-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2165	chr1	207220799	207220800	rs2629665	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q32.1	PFKFB2	rs2629665-C	0.5904	2E-11		0.1193	[0.085-0.154] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2165	chr1	207221928	207221929	rs3790619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q32.1	Intergenic	rs3790619-T	0.578	2E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2165	chr1	207222374	207222375	rs147110080	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	1q32.1	YOD1	rs147110080-?	0.0000628	1E-9		64.41	[43.65-85.17] unit increase	Illumina [105487]	N
2166	chr1	207227249	207227250	rs574695365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q32.1		rs574695365-A	NR	4E-19		0.0209	[0.016-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2166	chr1	207231750	207231751	rs2808454	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	1q32.1		rs2808454-A	0.456868	1E-40		0.0542852	[0.046-0.062] unit increase	NR [11722792] (imputed)	N
2166	chr1	207231750	207231751	rs2808454	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q32.1	PFKFB2	rs2808454-A	0.5005	1E-11		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2166	chr1	207240288	207240289	rs2016939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q32.1		rs2016939-G	NR	5E-17		0.0152	[0.012-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2166	chr1	207243850	207243851	rs923109	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	1q32.1	NR	rs923109-A	0.2606	7E-6		0.0215	[0.012-0.031] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
2166	chr1	207250299	207250300	rs1060286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.1	PFKFB2	rs1060286-A	0.610586	1E-10		0.014513142	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2166	chr1	207251517	207251518	rs1564879	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.1		rs1564879-G	0.528	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
2166	chr1	207262790	207262791	rs79737422	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	1q32.1	C4BPB	rs79737422-A	0.9965	4E-6		1.4993	[0.86-2.14] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2166	chr1	207269857	207269858	rs3813948	20212171	Buil A	2010-03-08	Blood	C4BPB/C4BPA is a new susceptibility locus for venous thrombosis with unknown protein S-independent mechanism: results from genome-wide association and gene expression analyses followed by case-control studies.	C4b binding protein levels	352 European ancestry related individuals	NA	1q32.1	C4BPB, C4BPA	rs3813948-C		4E-10	(%a7b0)			Illumina [283437]	N
2166	chr1	207273956	207273957	rs17020634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.2	C4BPA	rs17020634-G	0.067095	3E-24		0.04509961	[0.036-0.054] unit increase	Affymetrix [93095623] (imputed)	N
2166	chr1	207273956	207273957	rs17020634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs17020634-A	0.928978	1E-29				Affymetrix, Illumina [17210439] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRG2	5,347 Icelandic ancestry individuals	NA	1q32.2		rs11120218-A	0.1119	4E-19		0.258203	[0.2-0.31] unit increase	Illumina [7506463] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4BPA	5,356 Icelandic ancestry individuals	NA	1q32.2		rs11120218-A	0.1119	3E-50		0.414621	[0.36-0.47] unit increase	Illumina [7506463] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q32.2	C4BPA	rs11120218-A	0.120305	2E-28		0.037889604	[0.031-0.045] unit increase	Affymetrix [93095623] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.2	NR	rs11120218-G	0.88890625	9E-45	(S100A5, 14222_68_3)	0.54990375	[0.47-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.2	NR	rs11120218-G	0.88890625	8E-12	(THSD7A, 11174_8_3)	0.27586842	[0.2-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.2	NR	rs11120218-G	0.88890625	1E-28	(C4BPA, 9449_150_3)	0.42919558	[0.35-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
2166	chr1	207278450	207278451	rs11120218	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q32.2	NR	rs11120218-G	0.88890625	1E-11	(KLRG2, 10762_2_3)	0.27046677	[0.19-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2166	chr1	207280702	207280703	rs2808468	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THSD7A	5,357 Icelandic ancestry individuals	NA	1q32.2		rs2808468-G	0.1121	8E-23		0.287192	[0.23-0.34] unit increase	Illumina [7506463] (imputed)	N
2166	chr1	207280702	207280703	rs2808468	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A5	5,356 Icelandic ancestry individuals	NA	1q32.2		rs2808468-G	0.1121	7E-74		0.527407	[0.47-0.58] unit increase	Illumina [7506463] (imputed)	N
2166	chr1	207280738	207280739	rs12065624	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q32.2	C4BPA	rs12065624-T	0.0665	4E-12		0.05033371	[0.036-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
2166	chr1	207281706	207281706	rs34101855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.2	C4BPA	rs34101855-AG	0.123705	1E-10		0.021879992	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2166	chr1	207281706	207281706	rs34101855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.2	C4BPA	rs34101855-AG	0.123712	7E-10		0.02088596	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2166	chr1	207282148	207282149	rs2842700	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	1q32.2	C4BPA	rs2842700-A	0.1045	4E-9		1.1087132	[1.07-1.15]	Affymetrix [up to 34000000] (imputed)	N
2166	chr1	207282148	207282149	rs2842700	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	1q32.2	C4BPA	rs2842700-A	NR	3E-10		1.14	[1.09-1.18]	Affymetrix, Illumina [12923718] (imputed)	N
2166	chr1	207282148	207282149	rs2842700	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q32.2	NR	rs2842700-?	NR	9E-11		0.142	[0.099-0.185] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
2166	chr1	207285704	207285705	rs12074166	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q32.2	NR	rs12074166-G	0.072094	1E-31		0.044722	[0.037-0.052] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2166	chr1	207288391	207288392	rs17020993	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.2	C4BPA	rs17020993-G	0.13	1E-58	(Protein S100-A5, S100A5.14222.68.3)	0.58	[0.5-0.66] unit increase	Affymetrix [10572788] (imputed)	N
2166	chr1	207304899	207304900	rs4844573	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A5	5,356 Icelandic ancestry individuals	NA	1q32.2		rs4844573-C	0.3216	2E-83		0.376458	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
2166	chr1	207304899	207304900	rs4844573	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QL1	5,348 Icelandic ancestry individuals	NA	1q32.2		rs4844573-C	0.3216	3E-18		0.162945	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
2166	chr1	207304899	207304900	rs4844573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.2	NR	rs4844573-C	0.35	5E-57	(Protein S100-A5, S100A5.14222.68.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
2166	chr1	207311402	207311403	rs746932610	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1q32.2	C4BPA	rs746932610-C	1.0E-4	8E-6		44.37162	NR	Affymetrix, Illumina [30341632] (imputed)	N
2167	chr1	207387765	207387766	rs1346720	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q32.2	NR	rs1346720-T	0.3314	7E-9	(EA)	0.0904	[0.06-0.121] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
2167	chr1	207409413	207409414	rs7516640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.2		rs7516640-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2167	chr1	207418407	207418408	rs11580387	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.2	CD55	rs11580387-G	0.234	5E-78	(Complement decay-accelerating factor, CD55.5069.9.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
2167	chr1	207421047	207421048	rs7535029	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1q32.2	NR	rs7535029-?	NR	5E-8		0.119843	[0.077-0.163] unit increase	NR [13958389] (imputed)	N
2167	chr1	207421047	207421048	rs7535029	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1q32.2	NR	rs7535029-?	NR	1E-6			[NR]	Illumina [5779266] (imputed)	N
2167	chr1	207432629	207432630	rs4844589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD55	5,363 Icelandic ancestry individuals	NA	1q32.2		rs4844589-A	0.2661	1E-68		0.345813	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
2167	chr1	207455420	207455421	rs2017760	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q32.2	NR	rs2017760-G		1E-19		0.11	[0.09-0.13] unit increase	NR [NR]	N
2167	chr1	207455420	207455421	rs2017760	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q32.2	SRGAP2, C4BPA, CD55, CR2, CR1, CR1L, CD46, CD34, PLXNA2	rs2017760-?		2E-54				Affymetrix, Illumina [NR] (imputed)	N
2167	chr1	207455420	207455421	rs2017760	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q32.2	NR	rs2017760-T	0.3643	6E-12		0.0972	[0.07-0.125] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
2167	chr1	207457844	207457845	rs12134133	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q32.2	CD55, RP11-6J21.2	rs12134133-A	0.2849246	2E-33	(Complement decay-accelerating factor)	0.549	[0.46-0.63] unit decrease	Affymetrix [509946]	N
2167	chr1	207457844	207457845	rs12134133	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	1q32.2	Intergenic	rs12134133-?	NR	9E-6		1.46044	[1.22756-1.73751]	Illumina [~ 5900000] (imputed)	N
2168	chr1	207488003	207488004	rs1858001	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q32.2	C4BPA, CD55	rs1858001-C	0.6761	3E-13		7.276	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
2168	chr1	207490318	207490319	rs891378	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	1q32.2	CD55	rs891378-A	0.43	3E-12				Affymetrix, Illumina [up to 7331415] (imputed)	N
2168	chr1	207490318	207490319	rs891378	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	1q32.2	CD55	rs891378-A	0.43	2E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
2168	chr1	207526409	207526410	rs12023811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q32.2	NR	rs12023811-G	0.414	2E-42	(Complement decay-accelerating factor, CD55.5069.9.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
2168	chr1	207531038	207531039	rs28371669	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.2	NR	rs28371669-C	0.01045	2E-10	(RBP1)	0.07572	NR unit increase	Illumina [1671387] (imputed)	N
2168	chr1	207535245	207535246	rs1507765	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	1q32.2	NA	rs1507765-A	0.5795	9E-6		0.3463	[0.2155-0.5562]	Illumina [243345]	N
2168	chr1	207572752	207572753	rs561252740	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs561252740-C	0.0144	2E-8		0.5858	[0.38-0.79] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01333	3E-17		0.9171	[0.71-1.13] unit increase	Illumina [18238264] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	3E-16		0.8961	[0.68-1.11] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	9E-14		0.8106	[0.6-1.02] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on naive-mature B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01334	1E-14		0.8287	[0.62-1.04] unit increase	Illumina [18234616] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	9E-15		0.8429	[0.63-1.05] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	9E-15		0.8391	[0.63-1.05] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	1E-17		0.9254	[0.71-1.14] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01337	2E-11		0.7215	[0.51-0.93] unit increase	Illumina [18234152] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	3E-22		1.06	[0.85-1.27] unit increase	Illumina [18238311] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01333	2E-16		0.8885	[0.68-1.1] unit increase	Illumina [18234782] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01333	7E-17		0.909	[0.7-1.12] unit increase	Illumina [18238264] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01332	3E-15		0.854	[0.64-1.07] unit increase	Illumina [18238340] (imputed)	N
2169	chr1	207639978	207639979	rs749471642	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on CD24+ CD27+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs749471642-A	0.01333	2E-16		0.89	[0.68-1.1] unit increase	Illumina [18238264] (imputed)	N
2169	chr1	207652175	207652176	rs17045328	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	1q32.2	CR2	rs17045328-G	0.30	7E-6	(Malay)	1.38	[1.20-1.59]	Illumina [~ 2000000] (imputed)	N
2169	chr1	207652991	207652992	rs4317805	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	1q32.2	CR2, CR1	rs4317805-?	NR	2E-6	(EA)			Illumina [126270]	N
2169	chr1	207655814	207655815	rs1041250	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.2	CR1	rs1041250-?	NR	3E-6	(beta aminoisobutyric acid)	0.20424515	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
2169	chr1	207679228	207679229	rs4844599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	1q32.2		rs4844599-T	0.831608	3E-10		0.0349883	[0.024-0.046] unit decrease	NR [11722792] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	1q32.2	CR1	rs6656401-?	NR	2E-14		1.15	[1.11-1.19]	Affymetrix [up to 7055881] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting insulin levels (pleiotropy)	54,162 European ancestry cases, 51,750 European ancestry individuals	NA	1q32.2	CR1, CR2	rs6656401-?		4E-15				NR [NR]	N
2169	chr1	207692048	207692049	rs6656401	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	1q32.2	CR1	rs6656401-A	NR	4E-9		0.009751	NR unit increase	Affymetrix [10847151] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	1q32.2	CR1	rs6656401-A	0.1782	4E-18		8.67	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	1q32.2	CR1	rs6656401-A	NR	1E-17		8.54	NR z-score increase	Illumina [up to 9862738] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	1q32.2	NR	rs6656401-?	NR	1E-6		1.0611985	NR	Affymetrix [7795605] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	1q32.2	NR	rs6656401-?	NR	1E-8		1.0571748		Affymetrix [7795605] (imputed)	N
2169	chr1	207692048	207692049	rs6656401	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	1q32.2	CR1	rs6656401-?	NR	7E-11		1.1725225		Illumina [241551]	N
2169	chr1	207692048	207692049	rs6656401	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	1q32.2	CR1	rs6656401-A	0.197	6E-24		1.18	[1.14-1.22]	Illumina [7055881] (imputed)	N
2169	chr1	207747295	207747296	rs1752684	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q32.2		rs1752684-A	0.2071	7E-14		67.68868	z score increase	NR [6814003]	N
2170	chr1	207750567	207750568	rs679515	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	1q32.2		rs679515-?	NR	2E-25				Illumina [NR] (imputed)	N
2170	chr1	207750567	207750568	rs679515	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	1q32.2	CR1	rs679515-T	NR	9E-10		6.129	NR z-score increase	Affymetrix [10847151] (imputed)	N
2170	chr1	207750567	207750568	rs679515	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	1q32.2	NR	rs679515-?	NR	5E-9		1.06	[1.04, 1.08]	Affymetrix [7795605] (imputed)	N
2170	chr1	207750567	207750568	rs679515	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	1q32.2	CR1	rs679515-T	0.21	4E-9		1.22	[1.14-1.30]	NR [NR]	N
2170	chr1	207757514	207757515	rs12034598	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	1q32.2	CR1	rs12034598-A	0.408	9E-14	(ESR)			Affymetrix [~ 1900000] (imputed)	N
2170	chr1	207782706	207782707	rs17259045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs17259045-G	0.0898006	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
2170	chr1	207782706	207782707	rs17259045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.2	NR	rs17259045-G	0.113849	4E-12		0.020133	[0.014-0.026] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2170	chr1	207784967	207784968	rs3818361	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	1q32.2	CR1	rs3818361-A	0.204	5E-9		1.21	[1.14-1.29]	Affymetrix, Illumina [38043082] (imputed)	N
2170	chr1	207784967	207784968	rs3818361	21460840	Hollingworth P	2011-04-03	Nat Genet	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	1q32.2	CR1	rs3818361-?	0.19	4E-14		1.18	[1.13-1.24]	Affymetrix, Illumina [496763]	N
2170	chr1	207786288	207786289	rs6701713	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	1q32.2	NR	rs6701713-?	NR	8E-9				Affymetrix [7795605] (imputed)	N
2170	chr1	207786288	207786289	rs6701713	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	1q32.2	NR	rs6701713-?	NR	9E-24				Affymetrix [7795605] (imputed)	N
2170	chr1	207786288	207786289	rs6701713	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	1q32.2	CR1	rs6701713-A	0.20	5E-10		1.16	[1.11-1.22]	Affymetrix, Illumina [2324889] (imputed)	N
2170	chr1	207786827	207786828	rs2093760	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	1q32.2	CR1	rs2093760-A	0.205	1E-18		8.82	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
2170	chr1	207792908	207792909	rs12036785	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	1q32.2	NR	rs12036785-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
2170	chr1	207796064	207796065	rs61822977	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1q32.2		rs61822977-G	0.3826	3E-22		0.189555	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
2170	chr1	207796064	207796065	rs61822977	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM4	5,364 Icelandic ancestry individuals	NA	1q32.2		rs61822977-G	0.3826	3E-20		0.180053	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
2170	chr1	207803594	207803595	rs12034383	21700265	Kullo IJ	2011-06-22	Am J Hum Genet	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1q32.2	CR1	rs12034383-G	0.41	2E-28		0.13	[NR] unit decrease	Illumina [476395]	N
2170	chr1	207809832	207809833	rs56161922	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	1q32.2		rs56161922-?	NR	4E-6	(MLM)	0.3874831	[0.22-0.55] unit decrease	Illumina [~ 9000000] (imputed)	N
2170	chr1	207809832	207809833	rs56161922	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	1q32.2		rs56161922-?	NR	7E-6	(MLM)	0.3780124	[0.21-0.54] unit decrease	Illumina [~ 9000000] (imputed)	N
2170	chr1	207850538	207850539	rs11118328	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	1q32.2	NR	rs11118328-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
2170	chr1	207866151	207866152	rs7525478	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q32.2	CR1L	rs7525478-T	NR	1E-7		1.0697	NR	Affymetrix, Illumina [8278136] (imputed)	N
2170	chr1	207872289	207872290	rs7527798	21700265	Kullo IJ	2011-06-22	Am J Hum Genet	Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.	Erythrocyte sedimentation rate	1,979 European ancestry individuals	5,628 European ancestry individuals	1q32.2	CR1L	rs7527798-?	NR	2E-9		0.1	[NR] unit increase	Illumina [476395]	N
2170	chr1	207875174	207875175	rs4844614	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	1q32.2	CR1L	rs4844614-A	0.32	2E-7		0.1	[0.06-0.14] mmol/l increase	Illumina [329091]	N
2170	chr1	207876576	207876577	rs4562622	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	1q32.2		rs4562622-C	NR	6E-6	(GLM)	1.6989	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
2171	chr1	207912178	207912179	rs7550273	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.2	CD46	rs7550273-C	0.3928	9E-9		0.1935	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
2171	chr1	207912407	207912408	rs2761430	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		1q32.2	intergenic	rs2761430-A	0.679	9E-6		0.388	[0.22-0.56] unit increase	Illumina [640625] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.2		rs2761436-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		3E-8		0.306	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		3E-7	(EA)	0.309	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		2E-7		0.2	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		6E-8	(EA)	0.219	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		3E-7		0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207919747	207919748	rs2761436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q32.2	CR1L, CD46	rs2761436-C		2E-9		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2171	chr1	207930202	207930203	rs2724384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q32.2		rs2724384-A	NR	1E-25		0.0297	[0.024-0.035] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2171	chr1	207930202	207930203	rs2724384	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1q32.2	CD46	rs2724384-A	0.23	3E-9				Illumina [at least 508199]	N
2171	chr1	207930202	207930203	rs2724384	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	1q32.2	CD46	rs2724384-A	0.766	2E-9	(MMR-related vs MMR-unrelated)	1.47	[1.30-1.66]	Illumina [up to 8129553] (imputed)	N
2171	chr1	207932616	207932617	rs2724387	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	1q32.2	NR	rs2724387-C		2E-6				Illumina [458525]	N
2171	chr1	207934486	207934487	rs2466572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs2466572-C	0.809134	2E-15				Affymetrix, Illumina [23467995] (imputed)	N
2171	chr1	207934848	207934849	rs4844390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.2		rs4844390-G	NR	1E-23		0.0285	[0.023-0.034] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2171	chr1	207934848	207934849	rs4844390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.2	CD46	rs4844390-G	0.222497	1E-23		0.026473314	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr1	207934848	207934849	rs4844390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q32.2	NR	rs4844390-G	0.220218	5E-33		0.026549	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2171	chr1	207935075	207935075	rs5780403	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q32.2	NR	rs5780403-CA	0.2059	9E-6	(EA)	0.0378	[0.021-0.054] unit increase	Illumina [~ 11800000] (imputed)	N
2171	chr1	207938235	207938236	rs7545126	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q32.2	CD46	rs7545126-A	0.065	9E-6	(TG )	0.03	[NR] mg/dL increase	Illumina [899892]	N
2171	chr1	207940852	207940853	rs11118555	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	1q32.2	CD46	rs11118555-A	0.124	4E-26		0.612	[0.48-0.75] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
2171	chr1	207941190	207941191	rs2724374	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1q32.2	CD46	rs2724374-G	0.23	5E-9	(EA)			Illumina [at least 508199]	N
2171	chr1	207948060	207948061	rs35118522	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	1q32.2	CD46	rs35118522-T	0.893972	3E-10		0.654314	[0.45-0.86] unit decrease	Affymetrix [~ 7800000] (imputed)	N
2171	chr1	207956056	207956057	rs2488259	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	1q32.2		rs2488259-G	0.438172	7E-9		0.044971	[0.03-0.06] decrease	Affymetrix [NR]	N
2171	chr1	207961731	207961732	rs41317993	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1q32.2	CD46, CD34	rs41317993-A	0.1	5E-31		0.6304	[0.52-0.74] unit increase	Affymetrix [19941912] (imputed)	N
2171	chr1	207974385	207974385	rs200739437	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	1q32.2	NR	rs200739437-AC		1E-6		0.143	[0.085-0.201] SD units decrease	NR [10700000] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	1q32.2	NR	rs7523273-?	NR	7E-8				Illumina [up to 5582932] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.2	MIR29B2	rs7523273-A	NR	3E-7	(EA)	1.0613	[1.04-1.08]	Illumina [6627481] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.2	MIR29B2	rs7523273-A	NR	3E-7		1.057	[1.04-1.08]	Illumina [6627481] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q32.2	intergenic	rs7523273-A	NR	6E-7		1.055	[1.03-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.2	NR	rs7523273-A	NR	4E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2171	chr1	207977082	207977083	rs7523273	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1q32.2	C1orf132, CD46, CR1L	rs7523273-A	0.685	4E-8		1.063	[1.040-1.087]	Affymetrix, Illumina [9005918] (imputed)	N
2171	chr1	207978731	207978732	rs2796283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q32.2		rs2796283-A	NR	2E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2171	chr1	207979380	207979381	rs138621610	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	1q32.2		rs138621610-A	NR	4E-8		0.367752	[0.24-0.5] unit increase	Affymetrix [10900000] (imputed)	N
2171	chr1	207979380	207979381	rs138621610	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	1,877 women	NA	1q32.2		rs138621610-A	NR	3E-8		0.70761	[0.46-0.96] unit increase	Affymetrix [10900000] (imputed)	N
2171	chr1	207980900	207980901	rs4844620	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	1q32.2	CD46	rs4844620-G	0.79	5E-8		1.1	[1.07-1.13]	Affymetrix, Illumina [11702853] (imputed)	N
2171	chr1	207981418	207981419	rs761276	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	1q32.2	CD34, CD46	rs761276-A	NR	8E-9		0.137	[0.09-0.184] unit decrease	Affymetrix [7701190] (imputed)	N
2171	chr1	207991208	207991209	rs4844392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q32.2		rs4844392-G	NR	7E-10		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2171	chr1	207991208	207991209	rs4844392	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.2	NR	rs4844392-G	0.222574	4E-16		0.01828	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2171	chr1	207991208	207991209	rs4844392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.2		rs4844392-?	NR	1E-27				NR [~ 8900000] (imputed)	N
2171	chr1	207991208	207991209	rs4844392	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		1q32.2	mir-29b-2, CD46	rs4844392-?	NR	7E-7		1.5625	[1.3-1.85]	Illumina [11526719] (imputed)	N
2171	chr1	207993010	207993011	rs761277	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	1q32.2	CD34	rs761277-A	0.6377	2E-8		0.013240951	[0.0086-0.0178] unit increase	Affymetrix [11514463] (imputed)	N
2171	chr1	207997972	207997973	rs2724375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q32.2	NR	rs2724375-C	0.609518	3E-10		0.012081	[0.0083-0.0158] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2171	chr1	207998782	207998783	rs7522307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.2	C1orf132	rs7522307-C	0.124808	5E-11		0.02205943	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr1	207999199	207999200	rs2724373	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.2	NR	rs2724373-?	NR	1E-6		4.815	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2171	chr1	208004897	208004898	rs859711	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.2	NR	rs859711-?	NR	2E-38				Affymetrix [NR]	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	8E-9	(-450 ms)	0.0542194	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	6E-9	(-498 ms)	0.0547628	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	6E-9	(-458 ms)	0.0547187	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	5E-9	(-460 ms)	0.0548301	[0.036-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	5E-10	(-482 ms)	0.0584727	[0.04-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	4E-9	(-462 ms)	0.0553995	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	4E-8	(-448 ms)	0.0517697	[0.033-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	4E-11	(-480 ms)	0.0622694	[0.044-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	4E-10	(-466 ms)	0.0586523	[0.04-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	3E-9	(-456 ms)	0.0556109	[0.037-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	3E-10	(-472 ms)	0.0592747	[0.041-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	3E-10	(-468 ms)	0.0591188	[0.041-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	2E-9	(-484 ms)	0.0563153	[0.038-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	2E-8	(-446 ms)	0.0526569	[0.034-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	2E-10	(-478 ms)	0.0601429	[0.042-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	2E-10	(-470 ms)	0.0598676	[0.041-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-488 ms)	0.0573186	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-486 ms)	0.057489	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-476 ms)	0.057025	[0.039-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-474 ms)	0.0571707	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-464 ms)	0.0573646	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-454 ms)	0.0570463	[0.039-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-9	(-452 ms)	0.0574978	[0.039-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
2171	chr1	208011240	208011241	rs35232605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.2	CD46	rs35232605-G	0.901199	1E-8	(-500 ms)	0.0538169	[0.035-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
2172	chr1	208014921	208014922	rs1318653	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	1q32.2	CD46, CD34	rs1318653-T	0.774	1E-10		1.43	[1.28-1.59]	Illumina [8129524] (imputed)	N
2172	chr1	208014921	208014922	rs1318653	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	1q32.2	intergenic	rs1318653-T	0.771	2E-9	(MMR-related vs MMR-unrelated)	1.48	[1.30-1.67]	Illumina [up to 8129553] (imputed)	N
2172	chr1	208015400	208015400	rs34877957	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.2	mir-29b-2	rs34877957-GT	0.8959	2E-12		0.2916	[0.21-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
2172	chr1	208016973	208016974	rs71635159	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.2	NR	rs71635159-?	NR	8E-8		0.0091266	[0.0058-0.0125] unit increase	Affymetrix [805426] (imputed)	N
2172	chr1	208018073	208018074	rs10863593	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1q32.2	C1orf132, CD46, CR1L	rs10863593-?	NR	3E-7				Illumina [8000000] (imputed)	N
2172	chr1	208018366	208018367	rs2745980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.2	C1orf132	rs2745980-T	0.392176	8E-10		0.013905366	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
2172	chr1	208022290	208022291	rs1204707	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q32.2	SSBP3	rs1204707-?		9E-9				NR [7428630] (imputed)	N
2172	chr1	208024061	208024062	rs1204708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q32.2		rs1204708-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2172	chr1	208024819	208024820	rs12731740	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	1q32.2	CD46, LOC148696	rs12731740-T	0.10	3E-9	(pulse rate)	1.09	[0.72-1.44] beats per minute increase	Affymetrix [2156535] (imputed)	N
2172	chr1	208025925	208025926	rs6669384	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1q32.2	Intergenic	rs6669384-C	0.23	4E-8	(EA)			Illumina [at least 508199]	N
2172	chr1	208025925	208025926	rs6669384	28289848	Haralambieva IH	2017-04-01	Hum Genet	Genome-wide associations of CD46 and IFI44L genetic variants with neutralizing antibody response to measles vaccine.	Immune response to measles vaccine (measles-specific neutralising antibody titre)	2,555 European ancestry individuals, 317 African American individuals	NA	1q32.2	Intergenic	rs6669384-C	0.22	1E-8				Illumina [at least 508199]	N
2172	chr1	208026738	208026739	rs7532674	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.2	MIR29B2CHG	rs7532674-T	0.261	3E-12		0.015	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
2172	chr1	208027695	208027696	rs61821315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q32.2	C1orf132	rs61821315-T	0.241912	2E-19		0.023213422	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2172	chr1	208028028	208028029	rs11586197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs11586197-C	0.192388	1E-31				Affymetrix, Illumina [24649327] (imputed)	N
2172	chr1	208028471	208028472	rs76196708	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q32.2	NR	rs76196708-?	NR	2E-7		6958.181	NR unit decrease	Illumina [2379855]	N
2172	chr1	208029946	208029947	rs7550821	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1q32.2	NR	rs7550821-T	0.2441	3E-13		0.2551	[0.19-0.32] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs4844622-T	0.20664	9E-24				Affymetrix, Illumina [23114412] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q32.2	NR	rs4844622-T	0.240327	1E-25		0.023379	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q32.2	C1orf132	rs4844622-T	0.2411	7E-10		0.02585704	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q32.2	C1orf132	rs4844622-T	0.2413	7E-9		0.02427417	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q32.2	C1orf132	rs4844622-T	0.2413	6E-10		0.02609857	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2172	chr1	208034328	208034329	rs4844622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q32.2	C1orf132	rs4844622-T	0.2412	6E-9		0.02444337	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2172	chr1	208034954	208034955	rs984983	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q32.2	CD34	rs984983-T	0.868	6E-14		0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
2172	chr1	208034954	208034955	rs984983	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q32.2	CD34	rs984983-T	0.8679	6E-9		0.016672663	[0.011-0.022] unit decrease	Illumina [9339358] (imputed)	N
2172	chr1	208035087	208035088	rs984984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	1q32.2		rs984984-T	0.615127	1E-8		0.019733	[0.013-0.027] unit decrease	Illumina [13478866] (imputed)	N
2172	chr1	208035445	208035446	rs4844624	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1q32.2	NR	rs4844624-?	NR	2E-12				Affymetrix, Illumina [6211246] (imputed)	N
2172	chr1	208037401	208037402	rs12048704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.2	C1orf132	rs12048704-A	0.103765	2E-11		0.024923434	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2172	chr1	208037401	208037402	rs12048704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs12048704-A	0.110617	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
2172	chr1	208037401	208037402	rs12048704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.2	NR	rs12048704-A	0.104179	2E-13		0.022808	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2172	chr1	208037966	208037967	rs4844395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.2		rs4844395-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2172	chr1	208039430	208039431	rs75625374	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q32.2	CD34	rs75625374-C	0.0582	3E-11		0.0045	[0.0031-0.0059] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2172	chr1	208039470	208039471	rs1967689	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q32.2	CD34, CD46	rs1967689-?	0.75	5E-6	(EA)	1.18	[1.1-1.25]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2172	chr1	208039470	208039471	rs1967689	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	1q32.2	CD34, CD46	rs1967689-?	0.75	5E-6		1.18	[1.1-1.25]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2172	chr1	208044814	208044815	rs78530915	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MIR29B2CHG	rs78530915-?	NR	3E-8	(female)	1.87783	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2172	chr1	208045430	208045431	rs200688949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.2		rs200688949-A	NR	9E-9		0.0176	[0.012-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2172	chr1	208045430	208045431	rs200688949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.2	C1orf132	rs200688949-A	0.220358	1E-10		0.018255224	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2172	chr1	208045430	208045431	rs200688949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.2	NR	rs200688949-A	0.220624	9E-12		0.017192	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2172	chr1	208046306	208046307	rs11799642	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11799642-G	0.972621	1E-8		0.158501	[0.1-0.21] decrease	Affymetrix [11014269] (imputed)	N
2172	chr1	208047112	208047113	rs74150713	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Drug experimentation measurement	22,572 European ancestry individuals	NA	1q32.2	cd34, CD46	rs74150713-T	0.9169	2E-6		0.081	[0.114-0.048] unit decrease	Illumina [11434023] (imputed)	N
2172	chr1	208051122	208051123	rs78986840	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q32.2	CD34	rs78986840-T	0.9393	5E-11		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2172	chr1	208051818	208051819	rs859562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.2	RP11-328D5.1	rs859562-T	0.725194	2E-9		0.014781663	[0.0099-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
2172	chr1	208057799	208057800	rs6671850	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CD34	rs6671850-?	NR	4E-8	(female)	1.5332	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2172	chr1	208057799	208057800	rs6671850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA			rs6671850-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2172	chr1	208058182	208058183	rs2745949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q32.2		rs2745949-C	NR	1E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2172	chr1	208060008	208060009	rs7572	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q32.2	CD34	rs7572-T	0.218	5E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2172	chr1	208062972	208062973	rs2745953	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q32.2	NR	rs2745953-A		3E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
2172	chr1	208062972	208062973	rs2745953	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q32.2	CD34	rs2745953-A	0.7128	8E-9		5.759	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
2172	chr1	208076855	208076856	rs2724379	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q32.2	NR	rs2724379-C	0.3341	2E-7	(EA)	0.0346	[0.022-0.048] unit decrease	Illumina [~ 11800000] (imputed)	N
2172	chr1	208089291	208089292	rs2745959	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1q32.2	NR	rs2745959-C	0.33	1E-11		0.3	[0.2-0.4] unit decrease	Affymetrix [19941912] (imputed)	N
2172	chr1	208092186	208092187	rs6688357	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD34 on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.2		rs6688357-T	0.10452	7E-27		0.6353	[0.52-0.75] unit increase	Illumina [16999215] (imputed)	N
2172	chr1	208092268	208092269	rs6663390	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	1q32.2	NR	rs6663390-T	0.0956	3E-6		0.2444	[0.14-0.35] unit decrease	Illumina [10677593] (imputed)	N
2172	chr1	208093718	208093719	rs2785638	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	1q32.2	CD34	rs2785638-G	0.474	4E-9		6.429	[4.28-8.57] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
2172	chr1	208128721	208128722	rs2745967	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	1q32.2	CD34	rs2745967-G	0.37	7E-8		5.4	[3.48-7.32] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2172	chr1	208129064	208129065	rs11578508	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	1q32.2	CD34	rs11578508-A	0.665	4E-10	(Conditonal on rs11118555)	0.51	[0.39-0.63] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
2173	chr1	208169981	208169982	rs678294	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.2	NR	rs678294-?	NR	7E-6		0.007683	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
2173	chr1	208259530	208259531	rs17011903	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	1q32.2	PLXNA2	rs17011903-A	0.1	4E-8		1.2	[1.13-1.28]	Illumina [9332516] (imputed)	N
2173	chr1	208259530	208259531	rs17011903	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	1q32.2	PLXNA2	rs17011903-A	0.095478	4E-8		1.22	[1.14-1.31]	Illumina [9332516] (imputed)	N
2173	chr1	208266861	208266862	rs2498020	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q32.2	NR	rs2498020-?	NR	1E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
2174	chr1	208288044	208288045	rs55655237	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q32.2	PLXNA2	rs55655237-T	0.04062	1E-6	(African)			Illumina [4404269] (imputed)	N
2174	chr1	208292702	208292703	rs7516841	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.2	NR	rs7516841-?	NR	2E-13				Affymetrix [NR]	N
2175	chr1	208410363	208410364	rs12030888	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q32.2	NR	rs12030888-?	NR	2E-6		4.715	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2175	chr1	208425914	208425915	rs2801194	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.2		rs2801194-A	0.43	7E-42		13.56	z score increase	Affymetrix [9061022] (imputed)	N
2175	chr1	208430760	208430761	rs1781021	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q32.2		rs1781021-C	0.44	4E-24		10.14	z score increase	Affymetrix [9061022] (imputed)	N
2175	chr1	208430760	208430761	rs1781021	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q32.2		rs1781021-C	0.44	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
2175	chr1	208430760	208430761	rs1781021	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q32.2	NR	rs1781021-C	0.453	1E-17				NR [9056863] (imputed)	N
2175	chr1	208447185	208447186	rs12735671	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.2		rs12735671-C	0.666	4E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
2175	chr1	208452980	208452981	rs2801191	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q32.2	PLXNA2	rs2801191-A	0.331	3E-9		0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
2175	chr1	208456921	208456922	rs6681821	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q32.2	NR	rs6681821-C	0.475	4E-15				NR [9056863] (imputed)	N
2176	chr1	208535773	208535774	rs6677524	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	1q32.2	intergenic	rs6677524-T	0.88	3E-6		1.25	[NR]	Illumina [522285]	N
2176	chr1	208594312	208594313	rs35891924	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.2	NR	rs35891924-G	0.03659	5E-9	(SFPQ)	0.02339	NR unit increase	Illumina [1671387] (imputed)	N
2176	chr1	208605592	208605593	rs12037447	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	1q32.2		rs12037447-G	0.002965	5E-9		8.697	3.629-20.84	Illumina [164395]	N
2176	chr1	208619841	208619842	rs701610	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1q32.2	RP11-565N2.1	rs701610-T	0.24	5E-6		0.89	[0.5-1.28] g/day increase	Affymetrix [10353649] (imputed)	N
2177	chr1	208670706	208670707	rs192525030	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q32.2	Intergenic	rs192525030-T	1.0	2E-6	(AA)	0.625	unit increase	Illumina [NR] (imputed)	N
2177	chr1	208710592	208710593	rs10863714	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	1q32.2	NR	rs10863714-A	0.4238	3E-8		1.029	[1.02-1.04]	NR [8968716] (imputed)	N
2177	chr1	208718671	208718672	rs1891196	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	1q32.2	PLXNA2	rs1891196-G	0.436	7E-6		0.0046	[0.0026-0.0066] unit increase	Affymetrix [~ 7740000] (imputed)	N
2177	chr1	208718671	208718672	rs1891196	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1q32.2	PLXNA2	rs1891196-A	0.5651	9E-10		0.012412241	[0.0084-0.0164] unit decrease	Affymetrix [11514654] (imputed)	N
2177	chr1	208718671	208718672	rs1891196	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	1q32.2	PLXNA2	rs1891196-A	0.5657	2E-10		0.016509607	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
2177	chr1	208718671	208718672	rs1891196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1q32.2		rs1891196-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2177	chr1	208743338	208743339	rs188739258	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	1q32.2		rs188739258-T	0.013	4E-6		42.14	[24.75-59.53] unit decrease	Affymetrix [6939676] (imputed)	N
2177	chr1	208757585	208757586	rs17259784	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1q32.2	PLXNA2	rs17259784-?	NR	6E-6	(recessive)			Affymetrix [361034]	N
2177	chr1	208789948	208789949	rs12122043	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	1q32.2	RPS26P13	rs12122043-G	0.09	2E-6		1.5		Affymetrix [at least 730985] (imputed)	N
2177	chr1	208796921	208796922	rs115506418	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1q32.2	PLXNA2	rs115506418-A	NR	6E-6		0.149	[0.084-0.214] unit increase	Illumina [NR] (imputed)	N
2178	chr1	208806939	208806940	rs6685613	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	1q32.2	PLXNA2	rs6685613-T	0.863	6E-6	(EA)	0.138	[0.079-0.197] unit increase	Illumina [NR] (imputed)	N
2179	chr1	208931837	208931838	rs78965274	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1q32.2	RP11-459K23.2	rs78965274-G	0.13	9E-6		1.12	[0.63-1.61] g/day increase	Affymetrix [10353649] (imputed)	N
2179	chr1	208953176	208953176	rs201648240	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	1q32.2	LINC01717	rs201648240-?	0.83	4E-9		0.0062	[0.004-0.0084] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
2179	chr1	208973632	208973633	rs72748303	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	1q32.2	NR	rs72748303-A	0.023	6E-6		3.33	[1.98-5.60]	Illumina [7261187] (imputed)	N
2179	chr1	208994935	208994936	rs17013497	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1q32.2	intergenic	rs17013497-T	0.135	7E-6		0.03	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2179	chr1	209002219	209002220	rs12406463	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	1q32.2	NR	rs12406463-?		9E-6		0.36	unit decrease	Illumina [1211988] (imputed)	N
2179	chr1	209007777	209007778	rs12408989	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	1q32.2	NR	rs12408989-?		7E-6		0.34	unit decrease	Illumina [1211988] (imputed)	N
2179	chr1	209007777	209007778	rs12408989	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	1q32.2	NR	rs12408989-?		3E-6		0.38	unit decrease	Illumina [1211988] (imputed)	N
2179	chr1	209008061	209008062	rs34763909	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	1q32.2	PLXNA2, MIR205HG	rs34763909-C	0.029477015	6E-6		1.613073	[1.31213505-1.983031114]	Illumina [10439017] (imputed)	N
2180	chr1	209065126	209065127	rs149429732	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	1q32.2	NR	rs149429732-T	0.0058	3E-6		2.23	[1.59-3.12]	Illumina [9332516] (imputed)	N
2180	chr1	209109555	209109556	rs115777110	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	1q32.2	LOC105372897	rs115777110-?	NR	2E-8	(African)			Illumina [4404269] (imputed)	N
2180	chr1	209109555	209109556	rs115777110	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q32.2	LOC105372897	rs115777110-G	0.003125	1E-7	(African)			Illumina [4404269] (imputed)	N
2180	chr1	209189264	209189265	rs6657443	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in systolic blood pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	1q32.2	NR	rs6657443-?		8E-9	(Hispanic)	0.39	[0.25-0.53] unit decrease	Illumina [42246687] (imputed)	N
2180	chr1	209190473	209190474	rs151066755	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	1q32.2	PLXNA2, MIR205HG	rs151066755-G	0.022968509	2E-6		1.3238224	[1.179085695-1.486325877]	Illumina [10439017] (imputed)	N
2181	chr1	209208032	209208033	rs7539903	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q32.2	CAMK1G	rs7539903-T	0.38457	5E-8		0.0076915	[0.0049-0.0104] unit increase	Affymetrix [12370749]	N
2181	chr1	209208032	209208033	rs7539903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.2	NR	rs7539903-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2181	chr1	209208032	209208033	rs7539903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.2		rs7539903-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2181	chr1	209208276	209208277	rs6540498	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q32.2	NA	rs6540498-A	0.6207	1E-10		0.0126	[0.0087-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
2181	chr1	209211967	209211968	rs11119208	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1q32.2	NR	rs11119208-A	0.3856	3E-9		0.015068594	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
2181	chr1	209261227	209261228	rs60731826	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	1q32.2	NR	rs60731826-?	NR	9E-6		0.9781	[0.58-1.37] unit decrease	Affymetrix [7154205] (imputed)	N
2181	chr1	209268249	209268250	rs12730607	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1q32.2	NR	rs12730607-T	NR	2E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2181	chr1	209268249	209268250	rs12730607	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	1q32.2	NR	rs12730607-T	NR	7E-9				Affymetrix, Illumina [NR] (imputed)	N
2181	chr1	209277771	209277772	rs35577903	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (1 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	1q32.2		rs35577903-?	NR	6E-6				Illumina [1365315]	N
2182	chr1	209334216	209334217	rs4382726	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	1q32.2	intergenic	rs4382726-?	NR	4E-6	(SF4)			Affymetrix [5476100] (imputed)	N
2182	chr1	209445949	209445950	rs193183075	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1q32.2	MIR205HG	rs193183075-T	NR	6E-6		1.7245	[0.98-2.47] unit increase	Illumina [at least 950000] (imputed)	N
2183	chr1	209511149	209511150	rs76135081	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	1q32.2		rs76135081-?	NR	1E-8				Illumina [1128286]	N
2183	chr1	209512372	209512373	rs1021993	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	1q32.2	NR	rs1021993-?		4E-7	(family_Pasteurellaceae)	0.7293385	[0.47-0.98] unit increase	Affymetrix [211319]	N
2183	chr1	209519771	209519772	rs4844809	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.2	NR	rs4844809-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2183	chr1	209519771	209519772	rs4844809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.2		rs4844809-?	NR	7E-10				NR [~ 8900000] (imputed)	N
2183	chr1	209543559	209543560	rs17014375	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q32.2	NA	rs17014375-T	0.8691	4E-11		0.0165	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
2183	chr1	209548619	209548620	rs1507335	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.2	NR	rs1507335-C	0.01916	2E-8	(GPX4)	0.01135	NR unit decrease	Illumina [1671387] (imputed)	N
2183	chr1	209561972	209561973	rs114121907	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.2	NR	rs114121907-A	0.01568	4E-9	(HBD)	3.905	NR unit increase	Illumina [1671387] (imputed)	N
2183	chr1	209561972	209561973	rs114121907	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.2	NR	rs114121907-A	0.01568	1E-8	(HBG1)	11.98	NR unit increase	Illumina [1671387] (imputed)	N
2184	chr1	209624741	209624742	rs550612036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.2	NR	rs550612036-G	0.999806	3E-15		4.35544	[3.27-5.44] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2184	chr1	209640862	209640863	rs11119283	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.2	NR	rs11119283-?	NR	2E-33				Affymetrix [NR]	N
2184	chr1	209712888	209712889	rs6703183	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	1q32.2	NR	rs6703183-?	NR	1E-8		1.3	NR	Illumina [456414]	N
2184	chr1	209712888	209712889	rs6703183	23624525	Deng M	2013-04-28	Nat Genet	Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	506 Han Chinese ancestry cases, 1,859 Han Chinese ancestry controls	706 Han Chinese ancestry cases, 1,777 Han Chinese ancestry controls	1q32.2	CAMK1G	rs6703183-A	0.3416	3E-8		1.312	[NR]	Illumina [473683]	N
2185	chr1	209727256	209727257	rs12130212	21935397	Paternoster L	2011-09-15	PLoS One	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adult cases, 2,740 European ancestry controls	29,181 European ancestry individuals	1q32.2	CAMK1G	rs12130212-T	NR	2E-6				Illumina [545349]	N
2185	chr1	209756811	209756812	rs60686175	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	1q32.2	CAMK1G	rs60686175-C	0.22	6E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
2185	chr1	209767832	209767833	rs9429818	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.2	NR	rs9429818-?	NR	8E-8		0.0092965	[0.0059-0.0127] unit increase	Affymetrix [805426] (imputed)	N
2185	chr1	209791928	209791929	rs2076222	26566055	Mieda T	2015-11-13	Pharmacogenomics	Genome-wide association study identifies candidate loci associated with postoperative fentanyl requirements after laparoscopic-assisted colectomy.	Fentanyl consumption in laparoscopic-assisted colectomy (first 24 hours)	116 Japanese ancestry individuals	234 Japanese ancestry individuals	1q32.2	LAMB3	rs2076222-A	0.24	3E-7	(additive)	0.3876	[NR] unit decrease	Illumina [921239]	N
2185	chr1	209804498	209804499	rs2236891	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	1q32.2		rs2236891-G	NR	3E-6		0.385	unit increase	Illumina [NR] (imputed)	N
2185	chr1	209842278	209842279	rs10779511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q32.2		rs10779511-G	NR	3E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2186	chr1	209894784	209894785	rs1000282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.2		rs1000282-C	NR	2E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2186	chr1	209900608	209900609	rs2282741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.2		rs2282741-C	NR	2E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2186	chr1	209922667	209922668	rs6540549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.2		rs6540549-?	NR	5E-20				NR [~ 8900000] (imputed)	N
2186	chr1	209922907	209922907	rs151044971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.2	NR	rs151044971-I	0.216314	1E-20		0.022743	[0.018-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2186	chr1	209929002	209929004	rs10567431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.2		rs10567431-A	NR	4E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2186	chr1	209929002	209929004	rs10567431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.2	TRAF3IP3	rs10567431-A	0.212752	3E-17		0.02298691	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2186	chr1	209934132	209934133	rs11119337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.2		rs11119337-?	NR	9E-22				NR [~ 8900000] (imputed)	N
2186	chr1	209936570	209936571	rs6540555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs6540555-G	0.228751	6E-23				Affymetrix, Illumina [24246363] (imputed)	N
2186	chr1	209936570	209936571	rs6540555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs6540555-G	0.227344	2E-19				Affymetrix, Illumina [20825802] (imputed)	N
2186	chr1	209936570	209936571	rs6540555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.2	TRAF3IP3	rs6540555-G	0.2356	9E-10		0.02551992	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2186	chr1	209936570	209936571	rs6540555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q32.2	TRAF3IP3	rs6540555-G	0.2356	5E-9		0.02441044	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2186	chr1	209936630	209936631	rs6540556	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q32.2	TRAF3IP3	rs6540556-A	0.2311	6E-10		0.02622983	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
2186	chr1	209936913	209936914	rs17015169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.2	TRAF3IP3	rs17015169-T	0.228629	8E-18		0.022607774	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2186	chr1	209936913	209936914	rs17015169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.2	TRAF3IP3	rs17015169-T	0.228648	3E-16		0.021422204	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2186	chr1	209936913	209936914	rs17015169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.2	TRAF3IP3	rs17015169-T	0.228594	6E-23		0.0250814	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2186	chr1	209936913	209936914	rs17015169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.2	TRAF3IP3	rs17015169-T	0.228556	2E-18		0.023092836	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2186	chr1	209936913	209936914	rs17015169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q32.2	NR	rs17015169-T	0.22914	3E-20		0.02119	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2186	chr1	209936964	209936964	rs34406510	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q32.2		rs34406510-T	0.766	7E-13		0.09	[0.07-0.12] % increase	Affymetrix [NR] (imputed)	N
2186	chr1	209936964	209936964	rs34406510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.2	NR	rs34406510-I	0.234097	8E-26		0.02453	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2186	chr1	209940674	209940675	rs11119341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs11119341-T	0.199594	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
2186	chr1	209942434	209942435	rs12131636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.2		rs12131636-C	NR	2E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2186	chr1	209942434	209942435	rs12131636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.2		rs12131636-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2186	chr1	209946026	209946027	rs2235370	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1q32.2	NR	rs2235370-?	NR	1E-6		0.78	[0.7-0.87]	Illumina [539000] (imputed)	N
2186	chr1	209946026	209946027	rs2235370	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	1q32.2	TRAF3IP3	rs2235370-?	NR	5E-9		0.05	[0.032-0.068] unit decrease	Illumina [at least 589945] (imputed)	N
2186	chr1	209949556	209949557	rs41314250	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1q32.2		rs41314250-G	0.01238	7E-6		0.13599	[0.077-0.195] unit increase	Affymetrix [15580782] (imputed)	N
2186	chr1	209964079	209964080	rs2235371	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	1q32.2	IRF6	rs2235371-C	NR	9E-22		1.49	[1.37-1.61]	Affymetrix [842556]	N
2186	chr1	209966628	209966629	rs17015217	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	1q32.2	IRF6	rs17015217-A	NR	1E-6				Illumina [NR] (imputed)	N
2186	chr1	209970354	209970355	rs7555285	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q32.2	IRF6	rs7555285-C	0.8013	1E-10		0.1961	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2186	chr1	209970609	209970610	rs59043219	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	1q32.2	DIEXF, IRF6	rs59043219-A	0.379	1E-8		1.08	1.05-1.10	Illumina [9725440] (imputed)	N
2186	chr1	209970609	209970610	rs59043219	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	1q32.2	DIEXF, IRF6	rs59043219-?		7E-7				Illumina [9560910] (imputed)	N
2186	chr1	209970609	209970610	rs59043219	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease (APOE e4 interaction)	10,352 APOE e4+ cases, 9,207 APOE e4+ controls, 7,184 APOE e4- cases, 26,968 APOE e4- controls	1,250 APOE e4+ European ancestry cases, 536 APOE e4+ European ancestry controls, 718 APOE e4- European ancestry cases, 1,699 APOE e4- European ancestry controls	1q32.2	IRF6	rs59043219-A	0.37	9E-6		1.19	[1.10-1.28]	NR [NR]	N
2186	chr1	209977110	209977111	rs861020	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	1q32.2	IRF6	rs861020-A	NR	3E-12	(Meta-All, NSCL/P)	1.443	[1.273-1.635]	NR [497084]	N
2187	chr1	209977843	209977844	rs12405750	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	1q32.2	IRF6	rs12405750-C	0.588	8E-49		1.8083184	NR	Illumina [at least 870261] (imputed)	N
2187	chr1	209979634	209979635	rs7545542	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	1q32.2	NR	rs7545542-?	NR	2E-8		0.64	[0.6-0.69]	Illumina [539000] (imputed)	N
2187	chr1	209982024	209982025	rs6540559	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1q32.2	IRF6	rs6540559-?	NR	6E-16	(Asian)	1.6666665	[1.47-1.85]	Illumina [6090031] (imputed)	N
2187	chr1	209984469	209984470	rs75477785	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	1q32.2	IRF6	rs75477785-?	NR	4E-29		1.754386	[1.54-2.04] (GENEVA cohort)	Illumina [6090031] (imputed)	N
2187	chr1	209988046	209988047	rs10863790	20436469	Beaty TH	2010-05-02	Nat Genet	A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4.	Cleft lip	825 European ancestry trios, 1,038 Asian ancestry trios	2,194 Asian ancestry family members, 322 South Asian ancestry family members, 3,830 European ancestry family members, 1,769 South and Central American ancestry family members	1q32.2	IRF6	rs10863790-?	0.80	1E-14		1.72	[1.49-1.98]	Illumina [589945]	N
2187	chr1	209989091	209989092	rs72741048	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	1q32.2		rs72741048-T	0.34	4E-12				Illumina [6761961] (imputed)	N
2187	chr1	209989091	209989092	rs72741048	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	1q32.2	IRF6	rs72741048-T	0.506	3E-15		1.314	NR	Illumina [at least 870261] (imputed)	N
2187	chr1	209989269	209989270	rs642961	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q32.2		rs642961-A	0.1939	4E-10		0.17187805	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
2187	chr1	209989269	209989270	rs642961	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	1q32.2		rs642961-A	0.1951	2E-8		5.61306	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
2187	chr1	209989269	209989270	rs642961	19270707	Birnbaum S	2009-03-08	Nat Genet	Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24.	Orofacial clefts	224 European ancestry cases, 383 European ancestry controls	246 cases, 954 controls	1q32.2	IRF6	rs642961-A	NR	2E-6				Illumina [521176]	N
2187	chr1	209992126	209992127	rs12070337	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1q32.2	IRF6	rs12070337-?	NR	6E-12	(Asian)	1.4705882		Illumina [6090031] (imputed)	N
2187	chr1	209992500	209992501	rs1109430	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	1q32.2	IRF6	rs1109430-?	NR	1E-21		1.82	[1.55-2.12] (GENEVA cohort)	Illumina [6090031] (imputed)	N
2187	chr1	210020012	210020013	rs3766612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q32.2		rs3766612-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2187	chr1	210022569	210022570	rs6540565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.2		rs6540565-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2187	chr1	210027964	210027965	rs7546104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.2	NR	rs7546104-?	NR	2E-6		0.0082005	[0.0048-0.0116] unit increase	Affymetrix [805426] (imputed)	N
2187	chr1	210031947	210031948	rs7542091	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	1q32.2	DIEXF, SYT14	rs7542091-?	NR	2E-11		0.026	[0.033-0.018] unit decrease	Illumina [12039491] (imputed)	N
2187	chr1	210036698	210036699	rs724286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q32.2		rs724286-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2187	chr1	210036698	210036699	rs724286	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q32.2	NR	rs724286-C	0.212173	3E-10		0.0235598	[0.016-0.031] unit increase	NR [19129689] (imputed)	N
2187	chr1	210040496	210040497	rs116200489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q32.2		rs116200489-T	NR	4E-8		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2187	chr1	210047617	210047618	rs1319435	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.2	NR	rs1319435-?	NR	3E-26				Affymetrix [NR]	N
2187	chr1	210048818	210048819	rs2064163	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	1q32.2	IRF6, DIEXF	rs2064163-C	0.56	9E-19		1.2987013	[NR]	Illumina [803202]	N
2187	chr1	210057427	210057428	rs1983614	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	1q32.2	SYT14	rs1983614-T	0.484257	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
2187	chr1	210068116	210068117	rs4844913	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	1q32.2	Intergenic	rs4844913-?		5E-6				NR [NR]	N
2187	chr1	210072405	210072406	rs559775710	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1q32.2		rs559775710-A	0.012997	7E-6		0.1332	[0.075-0.191] unit increase	Affymetrix [15580782] (imputed)	N
2187	chr1	210077580	210077581	rs11119364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q32.2		rs11119364-T	NR	2E-14		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2187	chr1	210095526	210095527	rs6661316	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q32.2	NA	rs6661316-T	0.5893	2E-13		0.012	[0.0089-0.0151] unit increase	NR [~ 27400000] (imputed)	N
2187	chr1	210097015	210097016	rs113658831	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	1q32.2	NR	rs113658831-G	0.1627	2E-12		0.023558931	[0.017-0.03] unit increase	Affymetrix [10549349] (imputed)	N
2187	chr1	210098465	210098466	rs6695101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.2	NR	rs6695101-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
2187	chr1	210098465	210098466	rs6695101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q32.2		rs6695101-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2188	chr1	210116111	210116112	rs2205986	30013178	Kowalec K	2018-07-16	Nat Genet	Common variation near IRF6 is associated with IFN-?-induced liver injury in multiple sclerosis.	Drug-induced liver injury in interferon-beta-treated multiple sclerosis	38 European ancestry cases, 113 European ancestry controls	18 European ancestry cases, 13 European ancestry controls	1q32.2	IRF6, SYT14	rs2205986-?		2E-8		8.3	[3.6-19.2]	Illumina [up to 1705969] (imputed)	N
2188	chr1	210176169	210176170	rs7545279	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.2		rs7545279-T	0.791	3E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
2188	chr1	210194684	210194685	rs11119394	32758111	He M	2020-08-06	J Dent Res	Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.	Nonsyndromic cleft palate	994 Han Chinese ancestry cases, 2,963 Han Chinese ancestry controls	1,095 Han Chinese ancestry cases, 6,352 Han Chinese ancestry controls	1q32.2	NR	rs11119394-?	NR	3E-13		1.3	NR	Illumina [750091]	N
2188	chr1	210198268	210198269	rs170557	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	1q32.2	HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, C1orf133, SERTAD4, HHAT	rs170557-A	NR	2E-6		1.17574		Illumina [1233578] (imputed)	N
2188	chr1	210216730	210216731	rs227179	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	1q32.2	SYT14	rs227179-A	0.59	1E-10		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2188	chr1	210216945	210216946	rs227178	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	1q32.2	NR	rs227178-T	0.425	2E-8		0.0116836615	[0.0076-0.0157] unit increase	Affymetrix [10613246] (imputed)	N
2188	chr1	210236469	210236470	rs6540578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q32.2		rs6540578-?	NR	4E-12				NR [~ 8900000] (imputed)	N
2189	chr1	210241984	210241985	rs227206	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q32.2	NR	rs227206-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2189	chr1	210249129	210249130	rs141267706	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1q32.2		rs141267706-A	0.01274	1E-6		0.14614	[0.088-0.205] unit increase	Affymetrix [15580782] (imputed)	N
2189	chr1	210265383	210265384	rs227199	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	1q32.2	TRAF3IP3	rs227199-C	0.359326	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
2189	chr1	210280844	210280845	rs10863810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1q32.2		rs10863810-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2189	chr1	210293332	210293333	rs11119409	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q32.2	NR	rs11119409-C	0.4134	1E-8		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2189	chr1	210302042	210302043	rs12739243	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	1q32.2	SYT14	rs12739243-T	0.7794	1E-9		0.0242	[0.016-0.032] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
2189	chr1	210302042	210302043	rs12739243	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q32.2	NR	rs12739243-C	0.221	4E-17		0.0109343	[0.0084-0.0135] unit decrease	NR [9732723] (imputed)	N
2189	chr1	210302042	210302043	rs12739243	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q32.2	NR	rs12739243-C	0.221	4E-12		0.021251839	[0.015-0.027] unit decrease	NR [~ 10000000] (imputed)	N
2189	chr1	210304318	210304319	rs2046850	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	1q32.2	SYT14	rs2046850-T	0.19	2E-8		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
2189	chr1	210304318	210304319	rs2046850	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	1q32.2	SYT14	rs2046850-T	0.19	7E-8		0.038	[0.024-0.052] unit decrease	Affymetrix [at least 8900000] (imputed)	N
2189	chr1	210321042	210321043	rs11119421	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q32.2	SYT14	rs11119421-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
2189	chr1	210322928	210322929	rs7516843	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	1q32.2	SYT14	rs7516843-A	0.6832	3E-10		0.0611	[0.042-0.08] unit decrease	NR [9744772] (imputed)	N
2189	chr1	210327939	210327940	rs12130989	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	1q32.2	NR	rs12130989-?	NR	2E-7		0.148773	[0.092-0.205] unit increase	NR [13958389] (imputed)	N
2189	chr1	210331584	210331585	rs4537554	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1q32.2	NR	rs4537554-T	0.309	1E-9		0.00961716	[0.0065-0.0127] unit increase	NR [9732723] (imputed)	N
2189	chr1	210344883	210344884	rs78508049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q32.2		rs78508049-C	NR	5E-14		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2189	chr1	210344883	210344884	rs78508049	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q32.2	SYT14	rs78508049-T	0.812371	2E-10		0.0111446	[0.0077-0.0146] unit decrease	Affymetrix [12370749]	N
2189	chr1	210347989	210347990	rs2485892	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	1q32.2	SYT14, C1orf133	rs2485892-?	NR	7E-6		1.844	[1.412-2.409]	Affymetrix [329806] (imputed)	N
2189	chr1	210351557	210351558	rs2494169	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	1q32.2	SYT14	rs2494169-C	0.3201	1E-7		0.0058	[0.0036-0.008] unit increase	Affymetrix [~ 7740000] (imputed)	N
2189	chr1	210359332	210359333	rs55921136	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1q32.2	SYT14	rs55921136-C	0.203	3E-8		0.0158	[0.01-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
2189	chr1	210359332	210359333	rs55921136	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1q32.2	SERTAD4	rs55921136-T	0.7966	8E-9		0.015542869	[0.01-0.021] unit increase	Affymetrix [11514654] (imputed)	N
2189	chr1	210370221	210370222	rs11119434	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	1q32.2	SYT14	rs11119434-T	0.1609	8E-7		1.1362	[1.08008-1.19525]	Illumina [4946503] (imputed)	N
2190	chr1	210386891	210386892	rs2494184	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q32.2	C1orf133	rs2494184-T	0.401	5E-10		0.1692	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
2190	chr1	210411505	210411506	rs181660015	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	1q32.2		rs181660015-T	0.011224	2E-6		0.14997	[0.088-0.212] unit increase	Affymetrix [15580782] (imputed)	N
2190	chr1	210428777	210428778	rs55645018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q32.2		rs55645018-T	NR	2E-9		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2190	chr1	210436109	210436110	rs12023563	30102696	Chen Y	2018-08-13	PLoS Genet	A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1.	Biliary atresia	343 European ancestry cases, 1,716 European ancestry controls	156 European ancestry cases, 212 European ancestry controls	1q32.2	NR	rs12023563-G	0.68	4E-6		1.5873016	[1.3-1.92]	Illumina [1171073] (imputed)	N
2190	chr1	210459158	210459159	rs649009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.2		rs649009-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2190	chr1	210461310	210461311	rs12123877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q32.2		rs12123877-A	0.382807	4E-9		0.0121338	[0.0081-0.0162] unit decrease	Illumina [13479295] (imputed)	N
2190	chr1	210464757	210464758	rs2235797	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	1q32.2		rs2235797-?	NR	7E-6		1.0454029	[1.0254041405303-1.06579171989526]	Illumina [up to 7827597] (imputed)	N
2190	chr1	210466931	210466932	rs7516171	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q32.2	HHAT	rs7516171-C	0.8237	5E-27		0.0258711	[0.021-0.031] unit decrease	NR [13737936] (imputed)	N
2190	chr1	210466931	210466932	rs7516171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q32.2		rs7516171-?	NR	5E-30				NR [~ 8900000] (imputed)	N
2190	chr1	210466931	210466932	rs7516171	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q32.2		rs7516171-?	NR	2E-24		0.0259665	[0.021-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
2190	chr1	210466931	210466932	rs7516171	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q32.2	HHAT	rs7516171-C	0.823617	1E-11		0.0293972	[0.021-0.038] unit decrease	NR [17166351] (imputed)	N
2190	chr1	210466931	210466932	rs7516171	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q32.2	HHAT	rs7516171-C	0.821751	6E-7	(women)	0.0286537	[0.017-0.04] unit decrease	NR [17166351] (imputed)	N
2190	chr1	210468503	210468504	rs656753	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q32.2		rs656753-G	0.42	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
2190	chr1	210468998	210468999	rs60154123	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q32.2	intergenic	rs60154123-T	0.1501	3E-8		0.0444	[0.029-0.06] unit increase	Affymetrix [at least 7947838] (imputed)	N
2190	chr1	210473621	210473622	rs116161686	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q32.2	intergenic	rs116161686-A	0.138	9E-8		0.05	[0.032-0.068] unit increase	Affymetrix [7947838] (imputed)	N
2190	chr1	210479693	210479694	rs79379488	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q32.2	NR	rs79379488-A	NR	1E-6	(GEE model)	1.3364	[0.8-1.88] unit increase	NR [NR] (imputed)	N
2190	chr1	210482139	210482140	rs742690	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	1q32.2	NR	rs742690-?	NR	4E-6		0.0080191	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
2190	chr1	210485767	210485768	rs34367805	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	1q32.2		rs34367805-T	NR	8E-6		14.809	[8.46-21.16] unit increase	Illumina [NR] (imputed)	N
2190	chr1	210489410	210489411	rs34585985	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer or chronic obstructive pulmonary disease	112 lung cancer cases, 237 COPD cases	NA	1q32.2	HHAT	rs34585985-?		3E-7		0.121	[0.076-0.166] unit increase	Affymetrix [418365]	N
2190	chr1	210489410	210489411	rs34585985	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	1q32.2	HHAT	rs34585985-?		3E-6		0.12	[0.071-0.169] unit increase	Affymetrix [418365]	N
2191	chr1	210516186	210516187	rs3765885	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	1q32.2	HHAT	rs3765885-C	0.017396	9E-6		1.294325	[0.72-1.86] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2191	chr1	210536024	210536025	rs7527939	23142968	Betcheva ET	2012-11-07	Psychiatr Genet	Whole-genome-wide association study in the Bulgarian population reveals HHAT as schizophrenia susceptibility gene.	Schizophrenia	188 European ancestry cases, 376 European ancestry controls	99 European ancestry cases, 328 European ancestry controls	1q32.2	HHAT	rs7527939-C	NR	6E-9		2.63	[1.89-3.66]	Illumina [495089]	N
2191	chr1	210536553	210536554	rs12141729	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	1q32.2		rs12141729-T	8.0E-4	3E-7		4.805	[2.467-9.363]	Affymetrix [7842171] (imputed)	N
2191	chr1	210542066	210542067	rs12143538	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q32.2		rs12143538-C	0.35	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
2191	chr1	210576185	210576186	rs188648087	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q32.2	HHAT	rs188648087-G	NR	2E-6		1.2801	[0.75-1.81] unit increase	Illumina [13520550] (imputed)	N
2191	chr1	210592391	210592392	rs10863828	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q32.2	HHAT	rs10863828-T	0.756677	2E-8		0.0130444	[0.0085-0.0176] unit increase	Affymetrix [NR] (imputed)	N
2192	chr1	210664012	210664013	rs138646407	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q32.2	NR	rs138646407-?	NR	7E-7		1.24663	[0.75-1.74] unit increase	NR [13958389] (imputed)	N
2192	chr1	210677550	210677551	rs4537555	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	1q32.2	HHAT	rs4537555-G	0.11	4E-6		6.306	unit decrease	Illumina [635970]	N
2192	chr1	210677550	210677551	rs4537555	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	1q32.2	HHAT	rs4537555-G	0.11	2E-7		0.04418	[NR] unit decrease	Illumina [635970]	N
2192	chr1	210760443	210760444	rs4077408	26516778	Bis JC	2015-10-30	PLoS One	Drug-Gene Interactions of Antihypertensive Medications and Risk of Incident Cardiovascular Disease: A Pharmacogenomics Study from the CHARGE Consortium.	Cardiovascular disease in hypertension (ACE inhibitor interaction)	Up to 3,527 European ancestry individuals with cardiovascular disease, up to 11,848 European ancestry individuals without cardiovascular disease	Up to 1,751 European ancestry individuals with cardiovascular disease, up to 1,267 African American ancestry individuals with cardiovascular disease, up to 2,874 African American ancestry individuals without cardiovascular disease	1q32.2	HHAT	rs4077408-A	0.69	8E-6	(EA)	0.25	[NR] unit increase	Affymetrix, Illumina [1892626] (imputed)	N
2193	chr1	210794807	210794808	rs12758027	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q32.2	HHAT	rs12758027-C	0.453	6E-6	(EA)	1.09		Illumina [128935]	N
2193	chr1	210794807	210794808	rs12758027	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	1q32.2	HHAT	rs12758027-C	0.453	4E-7		1.09		Illumina [128935]	N
2193	chr1	210801562	210801563	rs4282879	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1q32.2	NR	rs4282879-?	NR	8E-7		0.149799	[0.09-0.209] unit decrease	NR [13958389] (imputed)	N
2193	chr1	210818769	210818770	rs4951711	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	1q32.2	HHAT	rs4951711-T	0.22	7E-6		0.9	[0.51-1.29] g/day increase	Affymetrix [10353649] (imputed)	N
2193	chr1	210823588	210823589	rs115453328	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	1q32.2	HHAT	rs115453328-?	NR	4E-6		0.352	[0.2-0.5] unit increase	Illumina [7870334] (imputed)	N
2194	chr1	210898262	210898263	rs1934620	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	1q32.2	NR	rs1934620-A	.8656	8E-6		4.2462	[NR] unit decrease	Illumina [1200000] (imputed)	N
2194	chr1	210912834	210912835	rs12123293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.2	Intergenic	rs12123293-T	0.6503	8E-9	(MTAG)	0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2194	chr1	210912834	210912835	rs12123293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.2		rs12123293-T	0.6476	4E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2194	chr1	210912834	210912835	rs12123293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.2	Intergenic	rs12123293-T	0.6476	3E-11	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2194	chr1	210989508	210989509	rs11119608	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	1q32.2	KCNH1	rs11119608-T	NR	1E-7		1.1111112	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
2194	chr1	210999305	210999306	rs4245746	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		KCNH1	rs4245746-?	NR	1E-7	(male)	0.604778	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2195	chr1	211054060	211054061	rs79589801	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	1q32.2		rs79589801-T	NR	3E-7		0.307393	[0.19-0.43] unit increase	Affymetrix [10900000] (imputed)	N
2195	chr1	211054060	211054061	rs79589801	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	1,877 women	NA	1q32.2		rs79589801-T	NR	5E-8		0.64136	[0.41-0.87] unit increase	Affymetrix [10900000] (imputed)	N
2195	chr1	211054060	211054061	rs79589801	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	1q32.2	NR	rs79589801-T	0.014	5E-7		0.371084	[0.23-0.52] unit increase	Affymetrix [up to 8900000] (imputed)	N
2195	chr1	211054060	211054061	rs79589801	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	1q32.2	NR	rs79589801-T	0.014	2E-8	(women)	0.808409	[0.53-1.09] unit increase	Affymetrix [up to 8900000] (imputed)	N
2195	chr1	211081180	211081181	rs1697621	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	1q32.2	KCNH1	rs1697621-?		2E-6	(East Asian)			Affymetrix [702413]	N
2195	chr1	211085409	211085410	rs1160574	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (total hip)	2,729 Korean ancestry individuals	1,547 Chinese Han ancestry individuals, 3,237 European ancestry individuals	1q32.2	KCNH1	rs1160574-T	0.26	2E-7	(females)	0.16	unit increase	Affymetrix [328918]	N
2195	chr1	211085409	211085410	rs1160574	27424934	Choi HJ	2016-07-15	Bone	Genome-wide association study in East Asians suggests UHMK1 as a novel bone mineral density susceptibility gene.	Bone mineral density (femoral neck)	2,729 Korean ancestry individuals	1,547 Han Chinese ancestry individuals, 3,237 European ancestry individuals	1q32.2	KCNH1	rs1160574-T	0.26	2E-7	(females)	0.16	unit increase	Affymetrix [328918]	N
2195	chr1	211087196	211087197	rs1777242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs1777242-C	0.25563	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
2195	chr1	211100592	211100593	rs1846946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs1846946-C	0.749632	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
2195	chr1	211104852	211104853	rs11119633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.2	KCNH1	rs11119633-C	0.68679	5E-10		0.01483183	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2195	chr1	211104852	211104853	rs11119633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.2	KCNH1	rs11119633-C	0.686786	8E-11		0.015514621	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2196	chr1	211168758	211168759	rs1501550	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	1q32.2	KCNH1	rs1501550-A	0.21	2E-6	(ADM)	0.011	[0.0071-0.0149] nmol/l decrease	Illumina [2269099] (imputed)	N
2196	chr1	211171615	211171616	rs4642960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.2	NR	rs4642960-G	0.69024	1E-10		0.012804	[0.0089-0.0167] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2196	chr1	211171615	211171616	rs4642960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.2	NR	rs4642960-G	0.690179	1E-11		0.013546	[0.0097-0.0174] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2196	chr1	211188936	211188937	rs12760791	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	1q32.2	KCNH1	rs12760791-A	0.09884	9E-6	(total cholesterol)	0.5491	NR unit decrease	Affymetrix [305158]	N
2196	chr1	211209451	211209452	rs2102128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs2102128-C	0.635531	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
2197	chr1	211289904	211289905	rs61848607	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q32.2		rs61848607-A	0.06157	4E-8		40.05577	z score increase	NR [6814003]	N
2197	chr1	211352624	211352625	rs1338356	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1q32.2	KCNH1	rs1338356-?	NR	7E-9		1.0564125	NR	Affymetrix [9154080] (imputed)	N
2197	chr1	211353949	211353950	rs3125847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q32.2		rs3125847-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2197	chr1	211359179	211359180	rs2050691	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q32.2	NR	rs2050691-?	NR	3E-8				Affymetrix [NR]	N
2197	chr1	211391315	211391316	rs7523875	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q32.2	intergenic	rs7523875-T	0.1425	2E-9		0.03028193	[0.02-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2197	chr1	211393200	211393201	rs12075082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.2		rs12075082-A	NR	7E-20		0.0227	[0.018-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2197	chr1	211399995	211399996	rs61850977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.2	NR	rs61850977-A	0.191923	1E-24				Affymetrix, Illumina [24246363] (imputed)	N
2197	chr1	211400378	211400379	rs56381832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.2		rs56381832-T	0.141725	6E-28		0.034595847	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
2197	chr1	211400378	211400379	rs56381832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.2	NR	rs56381832-T	0.140696	4E-24		0.02644	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2197	chr1	211401505	211401510	rs76058259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q32.2		rs76058259-A	0.144215	3E-10		0.018763	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2197	chr1	211402174	211402175	rs61850980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.2		rs61850980-A	0.141154	1E-46		0.04593308	[0.04-0.052] unit increase	Affymetrix [93095623] (imputed)	N
2197	chr1	211402174	211402175	rs61850980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.2		rs61850980-A	0.141144	2E-20		0.0281349	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2197	chr1	211402174	211402175	rs61850980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.2		rs61850980-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2197	chr1	211409843	211409844	rs3111251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.2		rs3111251-T	0.4325	4E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2198	chr1	211420932	211420933	rs3111258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q32.2		rs3111258-G	NR	2E-13		0.0119	[0.0088-0.015] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2198	chr1	211442185	211442186	rs7538812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.2	RCOR3	rs7538812-G	0.322979	1E-9		0.014587822	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr1	211498534	211498535	rs6703361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.3		rs6703361-A	NR	4E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2198	chr1	211502768	211502769	rs10863888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q32.3		rs10863888-G	NR	6E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2198	chr1	211548386	211548387	rs3738200	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q32.3	TRAF5	rs3738200-G	0.1663	2E-10		0.017202113	[0.012-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2198	chr1	211549431	211549432	rs17189000	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.3	Intergenic	rs17189000-A	0.1632	5E-9	(MTAG)	0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2198	chr1	211549431	211549432	rs17189000	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.3		rs17189000-A	0.164	3E-9	(conditional-joint)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2198	chr1	211549431	211549432	rs17189000	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.3	Intergenic	rs17189000-A	0.164	8E-11	(MTAG)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2199	chr1	211553063	211553064	rs12569232	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1q32.3	LINC00467	rs12569232-?	NR	2E-8		5.621	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
2199	chr1	211609767	211609768	rs35771425	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q32.3		rs35771425-T	0.7948	6E-9		44.191536	z score increase	NR [6814003]	N
2199	chr1	211609767	211609768	rs35771425	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q32.3	ENSG00000261252	rs35771425-?	NR	5E-12		0.017222868	[0.012-0.022] unit increase	NR [7306098]	N
2199	chr1	211609767	211609768	rs35771425	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1q32.3	NR	rs35771425-T	0.786	3E-11		0.018046992	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2199	chr1	211619702	211619703	rs11579557	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1q32.3	ARPC3P2	rs11579557-A	NR	1E-9		0.021485152	[0.015-0.028] unit decrease	Affymetrix [NR]	N
2199	chr1	211666217	211666218	rs10863899	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	1q32.3		rs10863899-A	0.582904	2E-8		1.1803	NR	Affymetrix [7846216] (imputed)	N
2199	chr1	211674382	211674383	rs6669919	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1q32.3	RD3	rs6669919-T	NR	2E-8		0.01658228	[0.011-0.022] unit increase	Affymetrix [NR]	N
2200	chr1	211691705	211691706	rs7553035	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	1q32.3	RD3	rs7553035-T	0.07	4E-6		0.37	[0.21-0.53] unit increase	Illumina [2675979] (imputed)	N
2200	chr1	211702178	211702179	rs1977876	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	1q32.3	NR	rs1977876-T	0.1857	3E-6		0.1849	[0.11-0.26] unit increase	Illumina [10677593] (imputed)	N
2200	chr1	211711974	211711975	rs142950731	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q32.3	intergenic	rs142950731-A	0.0127	6E-6		0.1516	[0.086-0.217] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2200	chr1	211712689	211712690	rs6679498	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Nevus count	6,254 Latin American individuals	NA	1q32.3	SLC30A1	rs6679498-C	NR	2E-8		0.11	[NR] unit decrease	Illumina [8703729] (imputed)	N
2200	chr1	211737949	211737950	rs78365243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.3		rs78365243-T	0.9513	4E-8		0.0181	[0.012-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2200	chr1	211737949	211737950	rs78365243	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1q32.3	NR	rs78365243-T	0.9485	2E-8		0.029164443	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2200	chr1	211738466	211738467	rs116493700	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	1q32.3	intergenic	rs116493700-G	0.005	7E-6		7.7	[2.7-21.93]	Illumina [1556551]	N
2200	chr1	211752883	211752883	rs3041304	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.3	SLC30A1	rs3041304-CTTCCGCG	0.2246	6E-18		0.0192	[0.015-0.024] unit increase	Affymetrix [18391927] (imputed)	N
2200	chr1	211802591	211802592	rs34603396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q32.3		rs34603396-G	NR	3E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2200	chr1	211802591	211802592	rs34603396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q32.3		rs34603396-G	0.399667	3E-9		0.013363412	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
2200	chr1	211802591	211802592	rs34603396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs34603396-G	0.334268	7E-13				Affymetrix, Illumina [20825802] (imputed)	N
2200	chr1	211802591	211802592	rs34603396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q32.3	NR	rs34603396-G	0.399341	2E-13		0.014461	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q32.3		rs61851769-T	NR	6E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q32.3		rs61851769-T	0.235897	1E-30		0.030618798	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q32.3		rs61851769-T	0.235848	4E-13		0.0185549	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs61851769-T	0.196373	3E-15				Affymetrix, Illumina [21126107] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q32.3	NR	rs61851769-T	0.236082	1E-12		0.017033	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2200	chr1	211803760	211803761	rs61851769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q32.3		rs61851769-?	NR	3E-15				NR [~ 8900000] (imputed)	N
2200	chr1	211803880	211803881	rs12734494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q32.3		rs12734494-A	NR	6E-15		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2201	chr1	211812771	211812772	rs11119783	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q32.3	LINC01693	rs11119783-A	0.475945	4E-21		0.00215385	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
2201	chr1	211812771	211812772	rs11119783	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q32.3	SLC30A1, NEK2	rs11119783-G	0.52	2E-12		7.01	z-score increase	Affymetrix [4311822] (imputed)	N
2201	chr1	211814963	211814964	rs11119784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs11119784-C	0.55384	8E-34				Affymetrix, Illumina [22063850] (imputed)	N
2201	chr1	211814963	211814964	rs11119784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q32.3	NR	rs11119784-C	0.545431	5E-36		0.023672	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2201	chr1	211814963	211814964	rs11119784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.3		rs11119784-?	NR	3E-25				NR [~ 8900000] (imputed)	N
2201	chr1	211815376	211815377	rs71572002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.3	RP11-354K1.1, RP11-354K1.2	rs71572002-T	0.461389	4E-14		0.01822453	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2201	chr1	211837404	211837405	rs10710484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.3	NEK2	rs10710484-G	0.542521	4E-9		0.014591255	[0.0097-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
2201	chr1	211843075	211843076	rs697003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q32.3	NEK2	rs697003-G	0.4744	5E-13		0.02557174	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2201	chr1	211846875	211846876	rs701929	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q32.3	NEK2	rs701929-G	NR	3E-9		0.0244884	[0.017-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
2201	chr1	211893018	211893019	rs2120452	29472613	Warrier V	2018-02-22	Sci Rep	Genetic contribution to 'theory of mind' in adolescence.	Theory of mind score in adolescence (Emotional Triangles Task)	4,577 European ancestry adolescents	NA	1q32.3	LOC105372904	rs2120452-?	NR	7E-7				Illumina [8282911] (imputed)	N
2201	chr1	211893389	211893389	rs138747966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.3	RP11-122M14.3	rs138747966-AAC	0.192851	5E-15		0.02210344	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2201	chr1	211918243	211918244	rs11119805	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		1q32.3	LPGAT1	rs11119805-A	0.123	3E-9		0.168	[0.113-0.223] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2201	chr1	211942465	211942466	rs77216986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.3	Intergenic	rs77216986-A	0.0515	4E-8	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2202	chr1	211973949	211973950	rs7526682	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder (unexposed to adversity)	3,139 Han Chinese ancestry cases, 3,832 Han Chinese ancestry controls	NA	1q32.3	LPGAT1	rs7526682-G	0.13	3E-8		5.54	z score increase	NR [4313801] (imputed)	N
2202	chr1	211993881	211993881	rs11371645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q32.3	LPGAT1	rs11371645-CA	0.518091	3E-12		0.015617109	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2202	chr1	212069928	212069929	rs2788144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q32.3		rs2788144-G	NR	3E-13		0.0395	[0.029-0.05] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2202	chr1	212069928	212069929	rs2788144	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q32.3	NR	rs2788144-A	0.96	3E-14		0.0371	[0.027-0.047] unit decrease	NR [NR]	N
2203	chr1	212083511	212083512	rs2970581	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	1q32.3	INTS7	rs2970581-A	0.0358	4E-9		0.0591	[0.039-0.079] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
2203	chr1	212083511	212083512	rs2970581	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q32.3	INTS7	rs2970581-A	0.0361	1E-6		0.050671	[0.03-0.071] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
2203	chr1	212091947	212091948	rs2808382	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	1q32.3	INTS7	rs2808382-C	0.0469	8E-6		2.7742	[2.33-3.22]	Illumina [8809853] (imputed)	N
2203	chr1	212136069	212136070	rs115440456	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	1q32.3	NR	rs115440456-C	0.0495	7E-6		0.3291	[0.19-0.47] unit decrease	Illumina [7305641] (imputed)	N
2203	chr1	212155007	212155008	rs17018311	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	1q32.3	INTS7	rs17018311-?	NR	2E-8	(Irritable)	4.21	[NR] unit increase	Affymetrix [703012]	N
2203	chr1	212155191	212155192	rs2993535	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q32.3	INTS7	rs2993535-A	0.9427	5E-7	(EA)	0.0506	[0.031-0.07] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2203	chr1	212155191	212155192	rs2993535	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q32.3	INTS7	rs2993535-A	0.9427	4E-8	(EA,men)	0.0825	[0.053-0.112] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2203	chr1	212174406	212174406	rs568925773	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.3	INTS7	rs568925773-CTT	0.392191	5E-8	(-20 ms)	0.0304331	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
2203	chr1	212174406	212174406	rs568925773	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.3	INTS7	rs568925773-CTT	0.392191	4E-8	(-18 ms)	0.0316142	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
2203	chr1	212201175	212201175	rs66579625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q32.3		rs66579625-CT	NR	6E-15		0.0101	[0.0076-0.0126] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2203	chr1	212201175	212201175	rs66579625	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.3	INTS7	rs66579625-CT	0.5837	9E-21		0.0178	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
2204	chr1	212211173	212211174	rs1578992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q32.3		rs1578992-T	NR	4E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2204	chr1	212220846	212220847	rs2970592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.3		rs2970592-?	NR	1E-18				NR [~ 8900000] (imputed)	N
2204	chr1	212237797	212237798	rs10863936	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	1q32.3	DTL	rs10863936-G	0.49	7E-6		1.19	[1.12-1.26]	Illumina [92772]	N
2204	chr1	212237797	212237798	rs10863936	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q32.3	DTL	rs10863936-A	0.53	2E-9		0.021	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
2204	chr1	212259404	212259407	rs202144190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q32.3	DTL	rs202144190-T	0.021477	4E-9		0.045757964	[0.031-0.061] unit increase	Affymetrix [93095623] (imputed)	N
2204	chr1	212274412	212274413	rs6540718	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.3	DTL	rs6540718-A	0.0142	1E-12		0.0543	[0.039-0.069] unit increase	Affymetrix [18391927] (imputed)	N
2204	chr1	212274412	212274413	rs6540718	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	1q32.3	DTL	rs6540718-A	0.014	1E-9		0.07	[0.046-0.094] unit increase	Affymetrix [18391927] (imputed)	N
2204	chr1	212289975	212289976	rs61830764	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q32.3	DTL	rs61830764-A	0.376903	1E-9		0.016623	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2204	chr1	212289975	212289976	rs61830764	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	1q32.3	DTL	rs61830764-A	0.36	5E-8		0.0218	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
2205	chr1	212366052	212366053	rs12038888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q32.3	RP11-15I11.2	rs12038888-T	0.396145	1E-10		0.014736513	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2205	chr1	212366052	212366053	rs12038888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q32.3		rs12038888-?	NR	9E-15				NR [~ 8900000] (imputed)	N
2205	chr1	212369227	212369228	rs71646142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q32.3		rs71646142-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2205	chr1	212369227	212369228	rs71646142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.3		rs71646142-T	0.1893	6E-9		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2205	chr1	212369227	212369228	rs71646142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.3	Intergenic	rs71646142-T	0.1893	3E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2205	chr1	212370744	212370745	rs1962127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q32.3		rs1962127-C	NR	4E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2205	chr1	212370744	212370745	rs1962127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.3		rs1962127-C	0.629475	5E-26		0.0240646	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2205	chr1	212370744	212370745	rs1962127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q32.3		rs1962127-C	0.629452	1E-12		0.0174955	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2205	chr1	212375358	212375359	rs1967115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.3		rs1967115-A	0.629478	7E-10		0.014086006	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
2205	chr1	212375358	212375359	rs1967115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1967115-A	0.654113	2E-14				Affymetrix, Illumina [24246363] (imputed)	N
2205	chr1	212375358	212375359	rs1967115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q32.3	NR	rs1967115-A	0.629369	1E-14		0.014497	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2205	chr1	212375358	212375359	rs1967115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1967115-A	0.649602	8E-17				Affymetrix, Illumina [23472807] (imputed)	N
2205	chr1	212375358	212375359	rs1967115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.3	NR	rs1967115-A	0.629389	1E-17		0.016769	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2205	chr1	212388606	212388607	rs7548606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.3	NR	rs7548606-G	0.626155	4E-11		0.015128272	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212389596	212389597	rs34836421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.3		rs34836421-C	0.1933	3E-8	(conditional-joint)	0.0098	[0.0063-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2205	chr1	212390103	212390104	rs7542973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q32.3		rs7542973-T	NR	3E-16		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2205	chr1	212392162	212392163	rs6540731	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	1q32.3	NR	rs6540731-A	0.415	9E-6		0.05	[0.028-0.072] unit decrease	Affymetrix, Illumina [138093] (imputed)	N
2205	chr1	212402579	212402580	rs1472226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.3	RP11-15I11.3	rs1472226-A	0.405938	9E-10		0.013781711	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212402579	212402580	rs1472226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1472226-A	0.379632	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
2205	chr1	212402579	212402580	rs1472226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.3		rs1472226-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2205	chr1	212407498	212407499	rs11289367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.3	RP11-15I11.3	rs11289367-C	0.422935	3E-11		0.015085736	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212407498	212407499	rs11289367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q32.3	RP11-15I11.3	rs11289367-C	0.422981	2E-12		0.015968224	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212422566	212422567	rs1663626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q32.3		rs1663626-A	NR	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
2205	chr1	212422566	212422567	rs1663626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q32.3		rs1663626-A	0.399498	9E-32		0.026604304	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2205	chr1	212422566	212422567	rs1663626	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q32.3	PPP2R5A	rs1663626-C	0.600726	3E-11		0.0129921	[0.0092-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
2205	chr1	212422566	212422567	rs1663626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q32.3	intergenic	rs1663626-A	0.3975	4E-9		0.02157876	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2205	chr1	212422566	212422567	rs1663626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q32.3	intergenic	rs1663626-A	0.3976	2E-10		0.02328052	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2205	chr1	212424226	212424227	rs71646153	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q32.3	NR	rs71646153-?	NR	1E-6		0.113681	[0.068-0.159] unit decrease	NR [13958389] (imputed)	N
2205	chr1	212426171	212426172	rs351376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q32.3		rs351376-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2205	chr1	212426433	212426434	rs351374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.3		rs351374-?	NR	1E-22				NR [~ 8900000] (imputed)	N
2205	chr1	212429258	212429259	rs10494951	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		1q32.3	LINC00574	rs10494951-G	0.806	2E-6		0.018	[0.01-0.026] dioptres increase	NR [5900115] (imputed)	N
2205	chr1	212433572	212433573	rs77213573	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1q32.3	NR	rs77213573-?	NR	1E-6		0.093	[0.056-0.13] unit increase	Illumina [~ 7800000] (imputed)	N
2205	chr1	212437441	212437442	rs351407	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q32.3	NR	rs351407-T	0.3714	7E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
2205	chr1	212440205	212440206	rs11119893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.3		rs11119893-A	0.183512	6E-28		0.032963105	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212440205	212440206	rs11119893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q32.3		rs11119893-A	0.183525	1E-21		0.028838964	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2205	chr1	212455844	212455845	rs12402642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q32.3		rs12402642-C	NR	1E-14		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
2205	chr1	212464460	212464461	rs381204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs381204-A	NR	4E-9		0.0169181	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
2205	chr1	212464460	212464461	rs381204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs381204-A	NR	8E-10		0.0176447	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
2205	chr1	212464460	212464461	rs381204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs381204-A	NR	3E-11		0.0193344	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
2206	chr1	212467846	212467847	rs10863961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q32.3	NR	rs10863961-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
2206	chr1	212467846	212467847	rs10863961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q32.3		rs10863961-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2206	chr1	212499829	212499830	rs6668646	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q32.3	PPP2R5A, RP11-384C4.7	rs6668646-T	0.3868	6E-6		0.0241	[0.014-0.034] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2206	chr1	212509004	212509005	rs2120770	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	1q32.3	NR	rs2120770-C	0.218	9E-6			NR	Illumina [7289516] (imputed)	N
2206	chr1	212509004	212509005	rs2120770	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	1q32.3	NR	rs2120770-C	0.218	2E-6		0.717	[0.63-0.82]	Illumina [7289516] (imputed)	N
2206	chr1	212523996	212523996	rs557341883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs557341883-CA	NR	3E-8		0.019439	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
2206	chr1	212523996	212523996	rs557341883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs557341883-CA	NR	1E-8		0.0199166	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
2206	chr1	212523996	212523996	rs557341883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q32.3	PPP2R5A	rs557341883-CA	NR	5E-9		0.0205975	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
2206	chr1	212532276	212532277	rs77010081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q32.3		rs77010081-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2206	chr1	212533779	212533780	rs11587555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q32.3	NR	rs11587555-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
2206	chr1	212544641	212544643	rs199584848	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	1q32.3	TM1EM206	rs199584848-A	0.024	2E-7		0.08	[0.051-0.109] % increase	Illumina [11510031] (imputed)	N
2206	chr1	212553110	212553111	rs701905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs701905-C	0.314943	3E-28				Affymetrix, Illumina [23467995] (imputed)	N
2206	chr1	212553110	212553111	rs701905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.3	NR	rs701905-C	0.352317	2E-28		0.021672	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2206	chr1	212553243	212553244	rs532279691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q32.3	TMEM206	rs532279691-A	0.003108	3E-9		0.11824281	[0.079-0.157] unit increase	Affymetrix [93095623] (imputed)	N
2206	chr1	212558396	212558397	rs792448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1q32.3	TMEM206	rs792448-A	0.3442	2E-14		0.02823878	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
2206	chr1	212563113	212563114	rs1086893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q32.3	TMEM206	rs1086893-C	0.344299	9E-26		0.025815772	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2206	chr1	212563113	212563114	rs1086893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q32.3	TMEM206	rs1086893-C	0.344271	1E-21		0.023566555	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2206	chr1	212563113	212563114	rs1086893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1086893-C	0.306876	1E-39				Affymetrix, Illumina [19905671] (imputed)	N
2206	chr1	212563113	212563114	rs1086893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q32.3	NR	rs1086893-C	0.343174	2E-43		0.029865	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
2207	chr1	212612910	212612911	rs6702347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.3	NENF	rs6702347-A	0.298498	1E-23		0.024178127	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2207	chr1	212620213	212620214	rs483954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q32.3	NR	rs483954-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
2207	chr1	212643659	212643660	rs7524087	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	1q32.3	AC092803.1	rs7524087-G	0.019	8E-6		0.285	[0.16-0.41] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
2207	chr1	212649611	212649612	rs4951601	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	1q32.3		rs4951601-?	NR	2E-6		1.281	[1.156-1.419]	Affymetrix [7975321] (imputed)	N
2207	chr1	212712453	212712454	rs112179782	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	1q32.3		rs112179782-C	0.8877	7E-6		0.06	[0.035-0.085] unit decrease	Illumina [7778465] (imputed)	N
2207	chr1	212728369	212728370	rs139052640	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q32.3	Intergenic	rs139052640-C	1.0	2E-6	(AA)	3.397	NR unit increase	Illumina [NR] (imputed)	N
2207	chr1	212728388	212728389	rs34656763	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	1q32.3	LOC101929565	rs34656763-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
2207	chr1	212728388	212728389	rs34656763	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	1q32.3	NENF, LOC101929565	rs34656763-?		1E-7	(EA)	0.157	[0.099-0.215] unit increase	Illumina [7205781] (imputed)	N
2207	chr1	212728388	212728389	rs34656763	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	1q32.3	LOC101929565	rs34656763-?	NR	7E-7	(EA)	0.053	[0.032-0.074] unit increase	Illumina [7176022] (imputed)	N
2208	chr1	212749154	212749155	rs188145713	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	1q32.3	ATF3	rs188145713-T	0.01	9E-6		0.2631	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2208	chr1	212749154	212749155	rs188145713	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	1q32.3	ATF3	rs188145713-T	0.01	8E-7	(correcting APOE e4)	0.2726	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2208	chr1	212787024	212787025	rs11571537	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q32.3	ATF3	rs11571537-T	0.9533	8E-6		0.0631	[0.035-0.091] unit decrease	NR [8041861] (imputed)	N
2208	chr1	212790685	212790686	rs3123543	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	1q32.3	ATF3	rs3123543-?	NR	1E-8				Illumina [20594536] (imputed)	N
2208	chr1	212799869	212799870	rs3122713	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	1q32.3	NR	rs3122713-?		4E-6	(IgE)			Illumina [NR]	N
2208	chr1	212841933	212841934	rs2501846	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced leukopenia in inflammatory bowel disease (conditioned on rs116855232)	196 Japanese ancestry cases, 1,024 Japanese ancestry controls	NA	1q32.3	FAM71A, BATF3, ATF3	rs2501846-?	NR	1E-6		1.94	[1.49-2.52]	Affymetrix [> 5000000] (imputed)	N
2208	chr1	212852831	212852832	rs12128789	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	1q32.3	BATF3	rs12128789-C	0.131779	4E-9		0.12696852	[0.085-0.169] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
2208	chr1	212855922	212855923	rs17019567	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	1q32.3	Intergenic	rs17019567-G	NR	1E-6		0.0439981	[0.026-0.062] unit decrease	Illumina [13520550] (imputed)	N
2208	chr1	212858747	212858748	rs906364	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q32.3	BATF3	rs906364-C	0.18	3E-8				NR [> 9500000] (imputed)	N
2208	chr1	212858796	212858797	rs906363	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	1q32.3	NR	rs906363-C	0.1459	4E-9		1.05	[1.033-1.066]	Affymetrix [15688218] (imputed)	N
2209	chr1	212861361	212861362	rs371923485	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q32.3	BATF3	rs371923485-A	0.146154	4E-8		1.0478418	[1.03046696064204-1.06550955630779]	NR [9572556] (imputed)	N
2209	chr1	212864991	212864992	rs12068304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	1q32.3		rs12068304-?	NR	9E-15				NR [~ 8900000] (imputed)	N
2209	chr1	212873430	212873431	rs2221593	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	1q32.3	BATF3	rs2221593-T	0.203	3E-8		1.15	[NR]	Illumina [4577171] (imputed)	N
2209	chr1	212877775	212877776	rs9308424	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	1q32.3	BATF3	rs9308424-G	NR	9E-14		1.0945709	NR	Affymetrix, Illumina [8278136] (imputed)	N
2209	chr1	212878651	212878652	rs6540754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q32.3		rs6540754-T	0.663505	9E-12		0.0160152	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2209	chr1	212880751	212880752	rs4311947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q32.3		rs4311947-T	0.710527	3E-12		0.016961388	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2209	chr1	212889338	212889339	rs1580991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q32.3		rs1580991-A	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2209	chr1	212895565	212895566	rs2492784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.3		rs2492784-C	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2209	chr1	212907865	212907866	rs6696908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q32.3		rs6696908-?	NR	4E-12				NR [~ 8900000] (imputed)	N
2209	chr1	212942594	212942595	rs2456827	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.3	NR	rs2456827-T	0.785979	2E-8		0.00536479	[0.0034-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
2209	chr1	212942594	212942595	rs2456827	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.3	NR	rs2456827-T	0.785979	2E-7		0.00534566	[0.0031-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
2209	chr1	212965329	212965330	rs185741445	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	1q32.3		rs185741445-?	NR	4E-6		35.8362	[34.32-37.35]	NR [663083]	N
2209	chr1	212969579	212969580	rs11120029	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q32.3	TATDN3	rs11120029-T	0.147	2E-8		1.102		Illumina [715631] (imputed)	N
2209	chr1	212969579	212969580	rs11120029	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	1q32.3	TATDN3	rs11120029-T	0.147	2E-8		1.102		Illumina [715631] (imputed)	N
2210	chr1	213014536	213014537	rs112990264	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	1q32.3	C1orf227	rs112990264-G	NR	1E-7		0.0541256	[0.034-0.074] unit decrease	Illumina [13520550] (imputed)	N
2210	chr1	213037623	213037624	rs963327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.3	NR	rs963327-A	0.748769	5E-18		0.018333	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2210	chr1	213039545	213039546	rs10864013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q32.3		rs10864013-T	NR	3E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2210	chr1	213039545	213039546	rs10864013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.3	FLVCR1	rs10864013-T	0.747402	7E-10		0.015669141	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2210	chr1	213039545	213039546	rs10864013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.3	FLVCR1	rs10864013-T	0.747425	4E-9		0.0149707785	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2210	chr1	213045520	213045521	rs2047293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2047293-A	0.79728	5E-15				Affymetrix, Illumina [24332387] (imputed)	N
2210	chr1	213045520	213045521	rs2047293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2047293-A	0.795374	2E-24				Affymetrix, Illumina [24653286] (imputed)	N
2210	chr1	213045520	213045521	rs2047293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2047293-A	0.793647	2E-21				Affymetrix, Illumina [24558453] (imputed)	N
2210	chr1	213056426	213056427	rs12750027	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	1q32.3	FLVCR1	rs12750027-?	NR	3E-10		1.109	[1.08-1.14]	Affymetrix [9000000] (imputed)	N
2210	chr1	213064717	213064718	rs11120062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q32.3	FLVCR1	rs11120062-A	0.480532	1E-10		0.014401061	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2210	chr1	213064786	213064787	rs34175403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.3		rs34175403-C	NR	3E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2210	chr1	213064786	213064787	rs34175403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q32.3		rs34175403-C	NR	8E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2210	chr1	213066913	213066914	rs2359324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.3	NR	rs2359324-G	0.745848	1E-14		0.016273	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2210	chr1	213068232	213068233	rs12408694	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.3	FLVCR1	rs12408694-C		1E-12		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
2210	chr1	213070457	213070458	rs12567976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q32.3	FLVCR1	rs12567976-T	0.487991	5E-9		0.012928106	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
2210	chr1	213076903	213076904	rs10779596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.3		rs10779596-?	NR	5E-12				NR [~ 8900000] (imputed)	N
2210	chr1	213100224	213100225	rs2792563	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q32.3		rs2792563-A	0.5672699999999999	1E-8		0.1407	[0.092-0.189] unit decrease	Illumina [18238311] (imputed)	N
2210	chr1	213110555	213110556	rs2935211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.3		rs2935211-G	NR	5E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2211	chr1	213126564	213126565	rs3002288	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	1q32.3	VASH2	rs3002288-A	NR	7E-8	(Brown eye color)	0.22	[0.14-0.30] unit decrease	Affymetrix, Illumina [2469762] (imputed)	N
2211	chr1	213134406	213134407	rs71634696	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	1q32.3	VASH2	rs71634696-G	0.905	5E-6		0.633	[0.36-0.9] unit increase	Illumina [6007542] (imputed)	N
2211	chr1	213151579	213151580	rs12568153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q32.3		rs12568153-T	0.2902	4E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2211	chr1	213151579	213151580	rs12568153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.3	Intergenic	rs12568153-T	0.2902	7E-10	(MTAG)	0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2211	chr1	213181915	213181916	rs3002284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.3	Intergenic	rs3002284-T	0.6786	4E-8	(MTAG)	0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2211	chr1	213181915	213181916	rs3002284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.3	Intergenic	rs3002284-T	0.6791	5E-10	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2213	chr1	213420894	213420895	rs17020327	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	1q32.3	RPS6KC1	rs17020327-C	0.20	1E-6		0.267	[0.16-0.37] unit increase	Illumina [6380737] (imputed)	N
2213	chr1	213429451	213429452	rs114210328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.3	NR	rs114210328-C	0.01742	2E-9	(SEPT11)	0.03248	NR unit decrease	Illumina [1671387] (imputed)	N
2213	chr1	213451957	213451958	rs12040029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q32.3		rs12040029-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2213	chr1	213502917	213502917	rs67179445	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q32.3	intergenic	rs67179445-A	0.7768	4E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix [18391927] (imputed)	N
2213	chr1	213514235	213514236	rs1187769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q32.3	Intergenic	rs1187769-T	0.2136	1E-8	(MTAG)	0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2213	chr1	213514235	213514236	rs1187769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q32.3	Intergenic	rs1187769-T	0.213	3E-11	(MTAG)	0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2214	chr1	213521432	213521433	rs10864043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q32.3	Intergenic	rs10864043-A	0.229	4E-9	(MTAG)	0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2214	chr1	213542705	213542706	rs17020562	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with less than 10 gray radiotherapy	69 European ancestry cases, 2,144 European ancestry controls	NA	1q32.3	RPS6KC1	rs17020562-C	0.0005	7E-8		44.52	[15.06-131.62]	Affymetrix, Illumina [16958466] (imputed)	N
2214	chr1	213542705	213542706	rs17020562	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors	207 European ancestry female cases, 2,774 European ancestry female controls	NA	1q32.3	RPS6KC1	rs17020562-C	0.001	3E-7		4.9	[2.08-11.54]	Affymetrix, Illumina [16958466] (imputed)	N
2214	chr1	213597840	213597841	rs320461	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide	317 European ancestry cases, 1,233 European ancestry controls	NA	1q32.3	intergenic	rs320461-A	0.23	4E-6		1.697	[1.356-2.123]	Illumina [794207]	N
2215	chr1	213699095	213699096	rs184323041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1q32.3	RP11-554K11.2	rs184323041-A	0.9978	2E-6		0.8295	[0.48-1.17] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2216	chr1	213816732	213816733	rs76497186	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	Interleukin-6 levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	1q32.3	RPS6KC1, PROX1-AS1	rs76497186-C	NR	1E-8	(AA)	0.823	[0.54-1.11] unit increase	Affymetrix [up to 12642786] (imputed)	N
2216	chr1	213821666	213821667	rs6540796	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	1q32.3	NR	rs6540796-A	0.7	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2216	chr1	213825271	213825272	rs11120180	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	1q32.3	PROX1	rs11120180-?	NR	1E-8		0.0541	NR L increase	Affymetrix [9390170] (imputed)	N
2216	chr1	213825271	213825272	rs11120180	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	1q32.3		rs11120180-G	0.82	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2216	chr1	213834642	213834643	rs4655303	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	1q32.3	intergenic	rs4655303-T	NR	5E-6		0.2187	unit increase	Illumina [5767231] (imputed)	N
2216	chr1	213855587	213855588	rs17706439	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	1q32.3	intergenic	rs17706439-A	0.17	3E-6		0.18	[0.10-0.26] unit increase	Illumina [~ 318327]	N
2216	chr1	213869759	213869760	rs146928721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	1q32.3		rs146928721-G	0.916824	7E-9		0.0425631	[0.028-0.057] unit decrease	NR [11722792] (imputed)	N
2217	chr1	213910493	213910494	rs1704198	23818313	Kim HJ	2012-11-06	Obesity (Silver Spring)	Combined linkage and association analyses identify a novel locus for obesity near PROX1 in Asians.	Obesity	756 Mongolian ancestry individuals from 55 families	1,301 Korean ancestry individuals	1q32.3	PROX1	rs1704198-A	0.19	4E-7	(WC)			Illumina [567072]	N
2217	chr1	213932541	213932542	rs12728754	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC096639.1	rs12728754-?	NR	7E-15		1.41589	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q32.3		rs1891058-A	NR	5E-8		0.0113	[0.0072-0.0154] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs1891058-A	0.605719	1E-10		0.014654095	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs1891058-A	0.605722	3E-14		0.017363552	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs1891058-A	0.605812	2E-11		0.015246468	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q32.3	NR	rs1891058-A	0.604349	3E-11		0.012515	[0.0088-0.0162] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1891058-G	0.402667	8E-14				Affymetrix, Illumina [17210439] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q32.3	NR	rs1891058-G	0.396033	5E-16		0.015891	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2217	chr1	213937381	213937382	rs1891058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.3		rs1891058-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2217	chr1	213939319	213939320	rs10864068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs10864068-T	0.605649	2E-14		0.017277831	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr1	213944466	213944466	rs147340715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs147340715-CTTTG	0.606306	1E-13		0.017071897	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr1	213946592	213946592	rs58741800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs58741800-T	0.3719	2E-11		0.015295791	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213946821	213946822	rs4993482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q32.3		rs4993482-T	NR	3E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2217	chr1	213952573	213952574	rs2359936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs2359936-C	0.63657	6E-9		0.013595395	[0.009-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs1539009-T	0.604458	2E-10		0.014437588	[0.01-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1539009-T	0.634095	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q32.3	NR	rs1539009-T	0.603948	9E-15		0.014697	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1539009-T	0.633304	4E-10				Affymetrix, Illumina [24588908] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs1539009-T	0.622009	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
2217	chr1	213953478	213953479	rs1539009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q32.3	NR	rs1539009-T	0.603691	8E-12		0.013155	[0.0094-0.0169] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs10494964-C	0.271973	9E-18		0.021602344	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs10494964-C	0.271948	1E-24		0.025899792	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.3	RP11-323I1.1	rs10494964-C	0.271965	7E-22		0.024276124	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.3	intergenic	rs10494964-C		4E-14		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.3		rs10494964-?	NR	3E-19				NR [~ 8900000] (imputed)	N
2217	chr1	213966886	213966887	rs10494964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q32.3	RP11-323I1.1	rs10494964-C	0.272	2E-9		0.02452032	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2217	chr1	214024224	214024225	rs4342822	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with more than 10 gray radiotherapy	131 European ancestry cases, 493 European ancestry controls	NA	1q32.3	PROX1	rs4342822-G	0.46	7E-9		1.92	[1.49-2.44]	Affymetrix, Illumina [16958466] (imputed)	N
2218	chr1	214105742	214105743	rs182234674	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q32.3	PROX1-AS1	rs182234674-T	0.998	5E-7	(AA)	0.273	unit increase	Illumina [NR] (imputed)	N
2218	chr1	214107007	214107008	rs74454622	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.3	NR	rs74454622-T	NR	9E-12		0.0314	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
2218	chr1	214107007	214107008	rs74454622	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1q32.3	PROX1-AS1	rs74454622-?	NR	1E-17		1.1159	[0.86-1.37] unit increase	Affymetrix [11100000] (imputed)	N
2218	chr1	214118089	214118090	rs340849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q32.3	PROX1	rs340849-C	0.495095	8E-9	(166 ms)	0.0320562	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2218	chr1	214118089	214118090	rs340849	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	1q32.3	intergenic	rs340849-?	NR	8E-6		1.69	[1.33-2.13]	Illumina [2505093] (imputed)	N
2218	chr1	214124469	214124470	rs340841	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	1q32.3	PROX1-AS1, LINC00538, PROX1	rs340841-?	NR	9E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
2218	chr1	214125126	214125127	rs17762192	20064070	Herbeck JT	2010-02-15	J Infect Dis	Multistage genomewide association study identifies a locus at 1q41 associated with rate of HIV-1 disease progression to clinical AIDS.	HIV-1 progression	51 European ancestry rapid progressor male cases, 57 European ancestry moderate progressor male cases, 48 European ancestry long-term progressor male cases	590 European ancestry seroconverter male cases	1q32.3	PROX1	rs17762192-G	0.59	2E-6		1.45	[NR]	Affymetrix [345926]	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.3	NR	rs148911629-G	0.990739	2E-22		0.040901	[0.032-0.05] unit increase	Affymetrix [16582909] (imputed)	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q32.3	NR	rs148911629-G	0.990781	1E-8		0.0372858	[0.025-0.05] unit increase	Affymetrix [16585854] (imputed)	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q32.3	NR	rs148911629-G	0.990696	6E-14		0.0433198	[0.031-0.055] unit increase	Affymetrix [16582621] (imputed)	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.3	NR	rs148911629-G	0.990739	7E-20		0.0434161	[0.034-0.053] unit increase	Affymetrix [16582965] (imputed)	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q32.3	NR	rs148911629-G	0.990781	1E-8		0.0409351	[0.026-0.056] unit increase	Affymetrix [16585866] (imputed)	N
2218	chr1	214129674	214129675	rs148911629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q32.3	NR	rs148911629-G	0.990696	8E-13		0.043869	[0.031-0.057] unit increase	Affymetrix [16582614] (imputed)	N
2218	chr1	214135659	214135660	rs6700065	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q32.3	RPS6KC1, PROX1	rs6700065-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
2218	chr1	214144858	214144858	rs11397498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q32.3		rs11397498-TA	NR	5E-48		0.0348	[0.03-0.04] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2218	chr1	214145730	214145731	rs340882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q32.3		rs340882-G	NR	1E-9		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2218	chr1	214145730	214145731	rs340882	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	1q32.3	PROX1-AS1	rs340882-C	0.4106	1E-10		0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
2218	chr1	214147888	214147889	rs7529073	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	1q32.3	PROX1-AS1	rs7529073-C	0.45832199	1E-6		0.0102101	[0.0061-0.0143] unit decrease	Affymetrix [9463307] (imputed)	N
2218	chr1	214147888	214147889	rs7529073	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.3	LOC10050583	rs7529073-C	NR	6E-6	(EA)	1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
2218	chr1	214147888	214147889	rs7529073	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q32.3	LOC10050583	rs7529073-C	NR	1E-7		1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
2218	chr1	214147888	214147889	rs7529073	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q32.3	intergenic	rs7529073-C	NR	3E-7		1.048218	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2218	chr1	214147888	214147889	rs7529073	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q32.3	NR	rs7529073-C	NR	6E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
2218	chr1	214150444	214150445	rs17712208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q32.3	NR	rs17712208-A	NR	4E-13		0.0494	[0.036-0.063] unit increase	Affymetrix [9000000] (imputed)	N
2218	chr1	214150444	214150445	rs17712208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.3	NR	rs17712208-A	NR	4E-40		0.0887	[0.076-0.102] unit increase	Affymetrix [9000000] (imputed)	N
2218	chr1	214150444	214150445	rs17712208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1q32.3	NR	rs17712208-A	NR	8E-34		0.0825	[0.069-0.096] unit increase	Affymetrix [9000000] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	1q32.3		rs79687284-G	0.965352	2E-10		0.0675314	[0.047-0.088] unit decrease	NR [11722792] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	1q32.3		rs79687284-G	0.965388	4E-43		0.155571	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	1q32.3		rs79687284-G	0.965337	2E-10		0.0717846	[0.05-0.094] unit decrease	NR [11722792] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	1q32.3		rs79687284-G	0.965356	2E-34		0.137132	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q32.3		rs79687284-C	NR	4E-13		0.0486	[0.035-0.062] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1q32.3		rs79687284-C	NR	1E-33		0.0818	[0.068-0.095] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	1q32.3	PROX1-AS1	rs79687284-C	0.0346315	3E-10		0.19963622	[0.14-0.26] unit increase	Affymetrix [7288503] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q32.3	PROX1	rs79687284-C	0.0348	3E-16		1.16	[1.12-1.21]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2218	chr1	214150820	214150821	rs79687284	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	1q32.3	intergenic	rs79687284-C	0.0364	2E-8	(Non diabetics)	0.20430802	[0.13-0.28] mmol/L increase	Illumina [24111857] (imputed)	N
2218	chr1	214154087	214154088	rs115732928	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		1q32.3	PROX1-AS1	rs115732928-A	0.952	1E-6		0.033	[0.019-0.047] dioptres decrease	NR [5900115] (imputed)	N
2218	chr1	214154718	214154719	rs2075423	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	1q32.3	PROX1-AS1	rs2075423-T	0.3679	3E-21		0.0161	[0.013-0.019] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
2218	chr1	214154718	214154719	rs2075423	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	1q32.3	PROX1	rs2075423-G	0.66	2E-6		1.08	[1.04-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
2218	chr1	214154718	214154719	rs2075423	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	1q32.3	PROX1	rs2075423-G	NR	9E-6	(men)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2218	chr1	214154718	214154719	rs2075423	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	1q32.3	PROX1	rs2075423-G	0.622753026853543	8E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2218	chr1	214155397	214155398	rs12403994	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1q32.3	PROX1	rs12403994-C	0.623	6E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q32.3		rs340874-C	NR	4E-17		0.0535	[0.041-0.066] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2218	chr1	214159255	214159256	rs340874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1q32.3		rs340874-C	NR	2E-10		0.0488	[0.034-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2218	chr1	214159255	214159256	rs340874	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	1q32.3	PROX1	rs340874-C	0.525938	2E-13		0.020339	[0.015-0.026] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	1q32.3	PROX1	rs340874-C	0.525938	1E-15		0.015662	[0.012-0.019] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	1q32.3	NR	rs340874-C		3E-8		1.06		NR [8016731] (imputed)	N
2218	chr1	214159255	214159256	rs340874	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q32.3	NR	rs340874-C	0.5528	5E-48		0.0668	[0.058-0.076] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2218	chr1	214159255	214159256	rs340874	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q32.3	NR	rs340874-C	0.4991	6E-45		0.0543	[0.047-0.062] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2218	chr1	214159255	214159256	rs340874	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	1q32.3	PROX1	rs340874-?	NR	7E-9				NR [NR]	N
2218	chr1	214159255	214159256	rs340874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	1q32.3		rs340874-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q32.3	PROX1	rs340874-C	0.5555	2E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1q32.3	PROX1-AS1	rs340874-T	0.43609575454678	8E-18		0.0626	[0.048-0.077] unit decrease	NR [5035015] (imputed)	N
2218	chr1	214159255	214159256	rs340874	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		1q32.3	PROX1	rs340874-C	NR	1E-7		1.0869565		Affymetrix, Illumina [1918233] (imputed)	N
2218	chr1	214159255	214159256	rs340874	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1q32.3	PROX1-AS1	rs340874-C	0.5308	6E-10		0.049	[0.033-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2218	chr1	214159255	214159256	rs340874	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	1q32.3	PROX1-AS1	rs340874-C	0.5308	1E-8	(EA)	0.0597	[0.039-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2218	chr1	214159255	214159256	rs340874	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	1q32.3	PROX1	rs340874-T	0.4754	4E-9		0.0011	[-0.00023-0.00243] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	1q32.3	PROX1	rs340874-T	0.4832	9E-7		0.0159	[0.0096-0.0222] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	1q32.3	PROX1	rs340874-C	0.52	5E-6		0.008	[0.0021-0.0139] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
2218	chr1	214159255	214159256	rs340874	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	1q32.3	PROX1	rs340874-C	0.52	7E-12		0.013	[0.0071-0.0189] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
2218	chr1	214161819	214161820	rs340839	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	1q32.3	PROX1	rs340839-A	0.47	4E-10		0.039	[0.027-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2218	chr1	214163973	214163975	rs71963857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q32.3	PROX1	rs71963857-C	0.562146	3E-12		0.015843527	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2218	chr1	214170088	214170089	rs772617786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	1q32.3		rs772617786-?	NR	5E-10		0.56467	[0.37-0.76] unit increase	NR [9800000] (imputed)	N
2219	chr1	214173839	214173840	rs3767848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q32.3		rs3767848-A	NR	1E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2219	chr1	214173839	214173840	rs3767848	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q32.3	NA	rs3767848-A	0.2539	2E-9		0.0124	[0.0083-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
2219	chr1	214174331	214174332	rs4655478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1q32.3		rs4655478-T	0.29231	4E-11		0.0226849	[0.016-0.029] unit increase	Illumina [13479135] (imputed)	N
2219	chr1	214174331	214174332	rs4655478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	1q32.3		rs4655478-T	0.292333	2E-13		0.0248436	[0.018-0.031] unit increase	Illumina [13478948] (imputed)	N
2219	chr1	214174331	214174332	rs4655478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	1q32.3		rs4655478-T	0.292392	5E-14		0.0258508	[0.019-0.033] unit increase	Illumina [13478961] (imputed)	N
2219	chr1	214175125	214175126	rs3767846	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q32.3	NR	rs3767846-A	0.7474	8E-9		0.013	[0.0085-0.0175] unit increase	NR [~ 27400000] (imputed)	N
2219	chr1	214175530	214175531	rs114526150	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q32.3	PROX1	rs114526150-G	0.0225	4E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q32.3		rs3754140-C	NR	4E-43		0.0264	[0.023-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q32.3		rs3754140-C	NR	2E-59		0.0294	[0.026-0.033] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q32.3	PROX1	rs3754140-C	0.261387	9E-54		0.03858891	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q32.3	PROX1	rs3754140-C	0.261392	1E-61		0.041545473	[0.037-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q32.3	PROX1	rs3754140-C	0.261397	9E-71		0.04459352	[0.04-0.05] unit increase	Affymetrix [93095623] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.3	PROX1	rs3754140-C		1E-50		0.037	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2219	chr1	214176379	214176380	rs3754140	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hematocrit	14,735 African American individuals, 6,762 African ancestry individuals, 21,684 Hispanic/Latino individuals	7,050 African American individuals	1q32.3	NR	rs3754140-C	NR	4E-9	(Hispanic/Latino)	0.061	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
2219	chr1	214176778	214176779	rs7541039	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q32.3	PROX1	rs7541039-T	0.259256	2E-8		0.016571	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2219	chr1	214176778	214176779	rs7541039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1q32.3	PROX1	rs7541039-T	0.2602	4E-21		0.03793458	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
2219	chr1	214176868	214176869	rs4282786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q32.3	NR	rs4282786-A	NR	2E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2219	chr1	214176868	214176869	rs4282786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q32.3	NR	rs4282786-A	NR	2E-11		0.0183	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2219	chr1	214176868	214176869	rs4282786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.3	NR	rs4282786-A	NR	5E-20		0.0255	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
2219	chr1	214176868	214176869	rs4282786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1q32.3	NR	rs4282786-A	NR	9E-22		0.0272	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
2219	chr1	214177318	214177319	rs61320678	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q32.3	NR	rs61320678-G	0.23565999999999998	2E-11		0.0100581	[0.0071-0.0131] unit increase	Affymetrix [16578495] (imputed)	N
2219	chr1	214177422	214177423	rs6665764	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q32.3	PROX1	rs6665764-A		2E-50		0.04	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2219	chr1	214177422	214177423	rs6665764	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q32.3	PROX1	rs6665764-A	0.2607	6E-18		0.03499522	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q32.3		rs2289002-C	NR	7E-65		0.0311	[0.028-0.035] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2289002-C	0.287646	1E-68				Affymetrix, Illumina [24332387] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	1q32.3	NR	rs2289002-T	0.703968	5E-12		0.02779	[0.02-0.036] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2289002-C	0.287435	3E-72				Affymetrix, Illumina [24653286] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	1q32.3	NR	rs2289002-T	0.70397	6E-13		0.029109	[0.021-0.037] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs2289002-C	0.286904	1E-86				Affymetrix, Illumina [24558453] (imputed)	N
2219	chr1	214177978	214177979	rs2289002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	1q32.3	NR	rs2289002-T	0.706505	4E-14		0.031256	[0.023-0.039] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
2219	chr1	214180720	214180721	rs3767844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q32.3	NR	rs3767844-G	0.28658	9E-62		0.034093	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2219	chr1	214180720	214180721	rs3767844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q32.3	NR	rs3767844-G	0.28638	7E-64		0.034623	[0.031-0.039] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2219	chr1	214180720	214180721	rs3767844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q32.3	NR	rs3767844-G	0.286435	3E-77		0.038226	[0.034-0.042] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2219	chr1	214180720	214180721	rs3767844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q32.3		rs3767844-?	NR	1E-46				NR [~ 8900000] (imputed)	N
2219	chr1	214180720	214180721	rs3767844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q32.3	PROX1	rs3767844-G	0.2877	1E-16		0.03275736	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
2219	chr1	214181765	214181766	rs60932796	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	1q32.3	PROX1	rs60932796-A	0.24232	4E-10		0.00546145	[0.0037-0.0072] unit decrease	Affymetrix [9463307] (imputed)	N
2219	chr1	214187261	214187262	rs366684	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	1q32.3	PROX1	rs366684-?	NR	1E-9		0.02934	[0.02-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
2219	chr1	214187261	214187262	rs366684	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	1q32.3	PROX1	rs366684-?	NR	6E-11		0.03142	[0.022-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
2219	chr1	214187261	214187262	rs366684	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	1q32.3	PROX1	rs366684-?	NR	4E-11		0.03175	[0.022-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
2219	chr1	214219330	214219331	rs55843942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q32.3	NR	rs55843942-G	NR	6E-10		0.0224	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2219	chr1	214223778	214223779	rs12062203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q32.3	NR	rs12062203-A	NR	2E-10		0.0537	[0.037-0.07] unit increase	Affymetrix [9000000] (imputed)	N
2219	chr1	214223778	214223779	rs12062203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q32.3	NR	rs12062203-A	NR	1E-12		0.0584	[0.042-0.074] unit increase	Affymetrix [9000000] (imputed)	N
2219	chr1	214225564	214225565	rs76970768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q32.3		rs76970768-C	NR	1E-14		0.0489	[0.037-0.061] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2219	chr1	214225564	214225565	rs76970768	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q32.3	PROX1	rs76970768-T	0.978913	1E-20		0.0160371	[0.013-0.02] unit decrease	Affymetrix [13995440] (imputed)	N
2219	chr1	214261349	214261350	rs1440620	23372041	Chu AY	2013-01-30	Hum Mol Genet	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	1q32.3	PROXI	rs1440620-T	0.65	1E-6	(Protein - model 2)	0.116	[0.069-0.163] percent decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2219	chr1	214297642	214297643	rs1795030	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	1q32.3	PROX1, SMYD2	rs1795030-?	NR	1E-6		0.78	0.68-0.88	Illumina [7605010] (imputed)	N
2219	chr1	214301322	214301323	rs3009934	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	1q32.3	PROX1	rs3009934-T		2E-6		1.32	[1.18-1.48]	Illumina [10258281] (imputed)	N
2220	chr1	214316774	214316775	rs145984379	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	1q32.3	NR	rs145984379-T	0.007565	3E-6		0.8007	[0.46-1.14] unit increase	Illumina [10677593] (imputed)	N
2220	chr1	214318747	214318748	rs10864086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	1q32.3	NR	rs10864086-C	0.255552	5E-11		0.02166	[0.015-0.028] unit increase	Affymetrix [16577313] (imputed)	N
2220	chr1	214318747	214318748	rs10864086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q32.3	NR	rs10864086-C	0.25558	3E-32		0.0152958	[0.013-0.018] unit increase	Affymetrix [16582621] (imputed)	N
2220	chr1	214318747	214318748	rs10864086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q32.3	NR	rs10864086-C	0.25558	2E-28		0.0152111	[0.012-0.018] unit increase	Affymetrix [16582614] (imputed)	N
2220	chr1	214318747	214318748	rs10864086	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q32.3	NR	rs10864086-C	0.257192	5E-13		0.0167165	[0.012-0.021] unit increase	NR [NR]	N
2220	chr1	214321080	214321081	rs1223791	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q32.3	PROX1	rs1223791-G	0.162663	9E-34		0.00363586	[0.003-0.0042] unit increase	Affymetrix [13995440] (imputed)	N
2220	chr1	214321080	214321081	rs1223791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.3	NR	rs1223791-G	0.163197	3E-44		0.0152989	[0.013-0.018] unit increase	Affymetrix [16582909] (imputed)	N
2220	chr1	214321080	214321081	rs1223791	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.3	NR	rs1223791-G	0.163197	5E-33		0.0148083	[0.012-0.017] unit increase	Affymetrix [16582965] (imputed)	N
2220	chr1	214323346	214323347	rs1223796	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q32.3	NR	rs1223796-G	0.163998	8E-19		0.0136846	[0.01-0.017] unit increase	Affymetrix [16585854] (imputed)	N
2220	chr1	214323346	214323347	rs1223796	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q32.3	NR	rs1223796-G	0.163998	1E-12		0.0125494	[0.0088-0.0163] unit increase	Affymetrix [16585866] (imputed)	N
2220	chr1	214326104	214326105	rs1795044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q32.3		rs1795044-C	NR	4E-25		0.0326	[0.027-0.039] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2220	chr1	214334840	214334841	rs1235127	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q32.3	PROX1, SMYD2	rs1235127-G	0.16	2E-20		9.26	z-score increase	Affymetrix [4311822] (imputed)	N
2220	chr1	214339894	214339895	rs72755429	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q32.3	NR	rs72755429-C	0.0122	2E-9	(PLD3)	0.02808	NR unit increase	Illumina [1671387] (imputed)	N
2220	chr1	214340156	214340157	rs1223815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q32.3		rs1223815-T	NR	4E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
2220	chr1	214355391	214355392	rs2196943	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q32.3	PROX1	rs2196943-?	NR	6E-6	(PC 34:3)	0.15826672	[0.09-0.227] unit increase	Affymetrix [at least 2500000] (imputed)	N
2220	chr1	214360891	214360892	rs1223809	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	1q32.3	NR	rs1223809-?	NR	6E-7		0.77497697	[0.70-0.86]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2220	chr1	214398057	214398058	rs7539006	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q32.3	NR	rs7539006-A	0.255023	2E-11		0.00632967	[0.0045-0.0082] unit increase	Affymetrix [16582909] (imputed)	N
2220	chr1	214398057	214398058	rs7539006	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q32.3	NR	rs7539006-A	0.255023	2E-9		0.00636411	[0.0043-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
2220	chr1	214400162	214400163	rs11120281	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	1q32.3		rs11120281-G	0.087972	3E-7		0.061334	[0.038-0.085] unit increase	Affymetrix [15580782] (imputed)	N
2220	chr1	214405703	214405704	rs12745411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q32.3		rs12745411-T	0.598804	2E-14		0.017175945	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2220	chr1	214405703	214405704	rs12745411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q32.3	NR	rs12745411-T	0.504733	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
2220	chr1	214405703	214405704	rs12745411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q32.3	NR	rs12745411-T	0.60014	6E-18		0.016574	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2220	chr1	214409279	214409280	rs1795061	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	1q32.3	SMYD2	rs1795061-T	0.337	9E-11		1.131	[1.090-1.174]	Affymetrix, Illumina [5363770] (imputed)	N
2221	chr1	214457008	214457009	rs9308433	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q32.3	NR	rs9308433-C	0.408306478651685	2E-6	(IGP42)	0.1494	[0.088-0.211] unit decrease	Illumina [~ 2500000] (imputed)	N
2221	chr1	214457008	214457009	rs9308433	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q32.3	NR	rs9308433-C	0.408224476833108	4E-6	(IGP2)	0.1457	[0.084-0.207] unit decrease	Illumina [~ 2500000] (imputed)	N
2221	chr1	214457173	214457174	rs9308434	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q32.3	SMYD2	rs9308434-T	0.452241057071646	8E-6		0.0024096	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
2221	chr1	214472183	214472184	rs12081925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q32.3		rs12081925-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2221	chr1	214484949	214484950	rs10157166	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q32.3		rs10157166-C	0.593	8E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
2221	chr1	214484949	214484950	rs10157166	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q32.3	SMYD2	rs10157166-C	0.58347	1E-8		0.0119231	[0.0078-0.016] unit increase	NR [16516521] (imputed)	N
2221	chr1	214484949	214484950	rs10157166	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q32.3	NR	rs10157166-T	0.407	8E-12		0.00752022	[0.0054-0.0097] unit increase	NR [9732723] (imputed)	N
2221	chr1	214484949	214484950	rs10157166	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1q32.3	NR	rs10157166-T	0.414	9E-9		0.00851744	[0.0056-0.0114] unit decrease	NR [9732723] (imputed)	N
2221	chr1	214531238	214531239	rs2291831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q32.3		rs2291831-T	NR	3E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2221	chr1	214556081	214556082	rs3002296	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q32.3		rs3002296-?	NR	4E-8				NR [NR]	N
2221	chr1	214556081	214556082	rs3002296	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q32.3		rs3002296-?	NR	2E-8				NR [NR]	N
2221	chr1	214556081	214556082	rs3002296	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q32.3		rs3002296-?	NR	4E-8				NR [NR]	N
2222	chr1	214597585	214597586	rs113614987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q41		rs113614987-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2222	chr1	214608413	214608414	rs7519523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	PTPN14	rs7519523-T	NR	3E-8		0.0165396	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
2222	chr1	214608703	214608704	rs4655345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q41		rs4655345-G	NR	7E-17		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2222	chr1	214609754	214609754	rs397954080	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q41	PTPN14	rs397954080-T	0.639	2E-9		0.0425	[0.029-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2222	chr1	214618184	214618185	rs4472734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q41		rs4472734-T	0.456934	9E-17		0.0166815	[0.013-0.021] unit decrease	Illumina [13479295] (imputed)	N
2222	chr1	214618184	214618185	rs4472734	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q41	PTPN14	rs4472734-?	NR	8E-18		0.024433242	[0.019-0.03] unit decrease	Illumina [27896057] (imputed)	N
2222	chr1	214618184	214618185	rs4472734	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q41	PTPN14	rs4472734-T	0.48	1E-9		0.024	[0.012-0.036] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
2222	chr1	214618769	214618770	rs4379654	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	1q41	PTPN14	rs4379654-?	NR	7E-6				Affymetrix [753382]	N
2222	chr1	214619100	214619101	rs12074810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q41		rs12074810-A	NR	5E-36		0.0162	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2222	chr1	214629615	214629616	rs12757404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs12757404-?	NR	1E-39				NR [~ 8900000] (imputed)	N
2222	chr1	214629615	214629616	rs12757404	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1q41	PTPN14	rs12757404-A	0.45	2E-6	(TG)	0.01	mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
2222	chr1	214638395	214638396	rs56248155	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q41	NR	rs56248155-G	0.403145	1E-8		0.0393065	[0.025-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
2222	chr1	214673270	214673271	rs7533482	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	1q41	RP11-365D23.4	rs7533482-T	0.788482	2E-13				Affymetrix, Illumina [NR] (imputed)	N
2222	chr1	214674924	214674925	rs17042140	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Plasma thyroid-stimulating hormone levels	2,789 Korean ancestry individuals	829 Korean ancestry individuals	1q41	PTPN14	rs17042140-T	0.46	4E-6		0.105	[0.060-0.150] uIU/L increase	Affymetrix [1418709] (imputed)	N
2222	chr1	214678563	214678564	rs79225222	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q41	NR	rs79225222-C	0.0597469	4E-12		0.0444636	[0.032-0.057] unit increase	NR [19129689] (imputed)	N
2222	chr1	214690502	214690503	rs12565246	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	1q41		rs12565246-?	NR	3E-7		0.834123	[0.76-0.9]	NR [674885]	N
2223	chr1	214723167	214723168	rs4072932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q41		rs4072932-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2223	chr1	214724667	214724668	rs3806315	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q41	PTPN14	rs3806315-A	0.591142	3E-11		0.017678	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2223	chr1	214743308	214743309	rs9699681	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q41	PTPN14	rs9699681-T	0.305	1E-6		0.0018	[0.001-0.0026] unit increase	Affymetrix [NR] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q41		rs7535253-C	NR	1E-13		0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q41	NR	rs7535253-C	NR	2E-10		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	1q41	NR	rs7535253-C	NR	9E-11		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	1q41	PTPN14	rs7535253-T	0.2	2E-9		0.401	[0.27-0.53] unit increase	Affymetrix [NR] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q41	PTPN14	rs7535253-T	0.2683	2E-15		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2223	chr1	214744892	214744893	rs7535253	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q41	PTPN14	rs7535253-T	0.2102	2E-13		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2223	chr1	214751785	214751786	rs6656590	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	1q41	PTPN14, CENPF	rs6656590-T	0.31	9E-6		0.19	unit increase	Illumina [5600000] (imputed)	N
2223	chr1	214779426	214779427	rs7366282	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	1q41	intergenic	rs7366282-C	0.06	2E-6		3.2	[1.98-5.16]	NR [~ 38000000] (imputed)	N
2224	chr1	214830616	214830617	rs438034	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	1q41	CENPF	rs438034-T	NR	5E-6		1.88	[1.44-2.46]	Illumina [326385]	N
2224	chr1	214837335	214837336	rs2290199	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	1q41	CENPF	rs2290199-A	0.035	6E-9	(YKL-40)	20.132	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
2224	chr1	214901736	214901737	rs71639541	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	1q41	NR	rs71639541-?	NR	4E-6		3.9385	[1.39-6.49] unit increase	Illumina [at least 560000] (imputed)	N
2224	chr1	214954938	214954939	rs6695352	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	1q41	intergenic	rs6695352-?	0.5	4E-6		1.1	[1.05-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2225	chr1	214992979	214992980	rs4655268	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	intergenic	rs4655268-C	0.4562	2E-9		0.0166	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2225	chr1	215031150	215031151	rs1415181	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	intergenic	rs1415181-T	0.5926	7E-14		0.0141	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
2225	chr1	215031613	215031614	rs1244983	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	1q41	NR	rs1244983-A	0.48	5E-10		0.02	[0.014-0.026] z score increase	Affymetrix [up to 10400000] (imputed)	N
2225	chr1	215037330	215037331	rs1244982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	GAPDHP24	rs1244982-G	NR	4E-8		0.0163663	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
2225	chr1	215038586	215038587	rs10864136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs10864136-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2225	chr1	215055521	215055522	rs12079357	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	1q41	NR	rs12079357-G	NR	7E-6		0.1839	[0.1-0.26] SD units increase	NR [10700000] (imputed)	N
2225	chr1	215065400	215065401	rs114198802	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q41	NR	rs114198802-G	0.106	1E-8		0.0100589	[0.0066-0.0135] unit increase	NR [9732723] (imputed)	N
2226	chr1	215095002	215095003	rs512597	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q41	CENPF, KCNK2	rs512597-T	0.81	4E-9	(EA)	24.26	[16.18-32.34] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
2226	chr1	215120406	215120407	rs555520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs555520-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2226	chr1	215120595	215120596	rs556648	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	CENPF/KCNK2	rs556648-A	0.2166	3E-7		0.0147	[0.009-0.0204] unit increase	Affymetrix [19819130] (imputed)	N
2226	chr1	215120595	215120596	rs556648	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	CENPF/KCNK2	rs556648-A	0.2166	4E-6		0.0132	[0.0075-0.0189] unit increase	Affymetrix [19819130] (imputed)	N
2226	chr1	215137221	215137222	rs6540873	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q41	KCNK2	rs6540873-A	NR	4E-6		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2226	chr1	215137221	215137222	rs6540873	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	1q41	KCNK2	rs6540873-A	0.6143	2E-6		0.0285	[0.017-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2226	chr1	215137221	215137222	rs6540873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	1q41	NR	rs6540873-?		2E-17				NR [7428630] (imputed)	N
2226	chr1	215137221	215137222	rs6540873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	1q41	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs6540873-?		2E-20				NR [7428630] (imputed)	N
2226	chr1	215137221	215137222	rs6540873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1q41	STIL, CMPK1, FOXE3, FOXD2	rs6540873-?		4E-17				NR [7428630] (imputed)	N
2226	chr1	215139179	215139180	rs562410	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q41	NR	rs562410-?	NR	1E-8	(grey matter)			NR [9227495] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q41		rs1452628-T	0.39	9E-35		12.3	z score increase	Affymetrix [9061022] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q41		rs1452628-T	0.39	6E-142		25.37	z score increase	Affymetrix [9061022] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q41		rs1452628-T	0.39	1E-16		8.27	z score increase	Affymetrix [9061022] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q41	NR	rs1452628-T	0.3788	1E-17				NR [9056863] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q41	NR	rs1452628-T	0.3788	1E-17				NR [9056863] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	1q41		rs1452628-?	NR	2E-10				NR [9705931] (imputed)	N
2226	chr1	215139886	215139887	rs1452628	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q41	NR	rs1452628-?	NR	1E-11	(grey matter)			NR [9227495] (imputed)	N
2226	chr1	215141569	215141570	rs10494988	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	1q41	KCNK2	rs10494988-C	0.3741	6E-6		0.0271	[0.015-0.039] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2226	chr1	215141569	215141570	rs10494988	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	1q41	KCNK2	rs10494988-C	0.3741	2E-6		0.0281	[0.017-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2226	chr1	215141569	215141570	rs10494988	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	1q41	KCNK2	rs10494988-?		3E-19	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
2226	chr1	215144757	215144758	rs7531398	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q41	KCNK2	rs7531398-?		5E-20				NR [7428630] (imputed)	N
2226	chr1	215145326	215145327	rs12123237	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q41	NR	rs12123237-?	NR	2E-8	(grey matter)			NR [9227495] (imputed)	N
2227	chr1	215221079	215221080	rs75277616	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q41	NR	rs75277616-?	NR	2E-9	(grey matter)			NR [9227495] (imputed)	N
2227	chr1	215226641	215226642	rs12118830	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	1q41	NR	rs12118830-A	0.041	3E-7		0.12	[0.07-0.17] unit increase	Illumina [6374524] (imputed)	N
2227	chr1	215330292	215330305	rs67931591	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor negative)	21,468 European ancestry cases, 105,974 European ancestry controls	NA	1q41		rs67931591-G	0.68	5E-7		0.94	[0.92-0.96]	Affymetrix, Illumina [NR] (imputed)	N
2227	chr1	215330292	215330305	rs67931591	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor negative)	2,636 African ancestry cases, 10,193 African ancestry controls, 21,468 European ancestry cases, 105,974 European ancestry controls	NA	1q41		rs67931591-G	0.65	4E-8		0.94	[0.92-0.96]	Affymetrix, Illumina [NR] (imputed)	N
2228	chr1	215416434	215416435	rs5780828	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor negative)	2,636 African ancestry cases, 10,193 African ancestry controls, 21,468 European ancestry cases, 105,974 European ancestry controls	NA	1q41		rs5780828-TA	NR	2E-6	(conditioned on rs67931591)	0.94	[0.92-0.96]	Affymetrix, Illumina [NR] (imputed)	N
2229	chr1	215566592	215566593	rs1039716	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	1q41	KCTD3	rs1039716-T	0.7829	7E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
2230	chr1	215652458	215652459	rs6540899	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	1q41	NR	rs6540899-A	0.12	2E-6		1.21	[1.12-1.31]	Illumina [~ 1113287] (imputed)	N
2231	chr1	215791004	215791005	rs2677117	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q41	NR	rs2677117-A	0.327	5E-6	(IFNAR2_of_monocytes)			Illumina [5084123] (imputed)	N
2231	chr1	215828498	215828499	rs4655413	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q41	USH2A	rs4655413-T	0.253924	3E-7		0.015243	[0.0094-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2232	chr1	215898221	215898222	rs17025239	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1q41	NR	rs17025239-A	NR	8E-6		0.243222	[0.14-0.35] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
2232	chr1	215918565	215918566	rs2797225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fusobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1q41		rs2797225-T	0.500084	3E-8		0.0280484	[0.018-0.038] unit decrease	Illumina [7980478] (imputed)	N
2233	chr1	216056347	216056348	rs17025548	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q41	NR	rs17025548-G	0.165189309375	8E-6	(IGP10)	0.1954	[0.11-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
2233	chr1	216074956	216074957	rs1325523	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	1q41	USH2A	rs1325523-A	0.05049	6E-6	(TG)	0.01007	NR unit decrease	Affymetrix [305158]	N
2233	chr1	216136619	216136620	rs3845529	25234806	Dijkstra AE	2014-09-18	Eur Respir J	Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.	Chronic mucus hypersecretion	342 European ancestry cases, 1,006 European ancestry controls	130 European ancestry cases, 2,313 European ancestry controls	1q41	USH2A	rs3845529-?	0.58	3E-6		1.45	[NR]	Illumina [522636]	N
2234	chr1	216176174	216176175	rs72744662	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USH2A	rs72744662-?	NR	5E-13	(female)	2.0295	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2234	chr1	216248210	216248211	rs181361216	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q41	NR	rs181361216-?	NR	1E-8				Illumina [7760689] (imputed)	N
2235	chr1	216270468	216270469	rs111033333	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	1q41		rs111033333-?	NR	3E-8		4.66		NR [98334]	N
2235	chr1	216294878	216294879	rs388485	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q41	NR	rs388485-T	0.502	8E-9		0.0062147	[0.0041-0.0083] unit increase	NR [9732723] (imputed)	N
2235	chr1	216296197	216296198	rs616523	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q41		rs616523-C	0.501	6E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
2235	chr1	216299543	216299544	rs200119489	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	1q41		rs200119489-G	NR	6E-6		2.5523	[1.47-3.63] unit increase	Illumina [NR] (imputed)	N
2235	chr1	216328388	216328390	rs578058823	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs578058823-T	0.01045	3E-8	(EIF2B1)	0.02722	NR unit increase	Illumina [1671387] (imputed)	N
2235	chr1	216393300	216393301	rs142253038	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1q41		rs142253038-?	NR	3E-9		2.1776	[1.46-2.9] unit decrease	Affymetrix [NR] (imputed)	N
2236	chr1	216463825	216463826	rs700027	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q41	USH2A	rs700027-G	0.981695605054211	4E-6	(F_Desulfovibrionaceae_HB)	0.897417	[0.51-1.28] unit increase	Illumina [7711310] (imputed)	N
2236	chr1	216504268	216504269	rs7532570	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q41	NR	rs7532570-G	0.0626114699331849	6E-6	(IGP49)	0.2924	[0.17-0.42] unit increase	Illumina [~ 2500000] (imputed)	N
2237	chr1	216534674	216534675	rs148183513	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1q41		rs148183513-?	NR	3E-8		2.1094	[1.36-2.85] unit decrease	Affymetrix [NR] (imputed)	N
2237	chr1	216566777	216566778	rs6664755	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	1q41	NR	rs6664755-?	NR	2E-6		0.0759	[0.045-0.107] unit decrease	Illumina [1224134] (imputed)	N
2237	chr1	216604452	216604453	rs7349114	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q41	USH2A	rs7349114-C	NR	1E-6		5.641103	[3.35-7.93] unit decrease	Illumina [> 6200000] (imputed)	N
2237	chr1	216630650	216630651	rs4240919	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q41	NR	rs4240919-?		4E-6				Illumina [4322238] (imputed)	N
2237	chr1	216632947	216632948	rs10495024	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry female individuals	NA	1q41	intergenic	rs10495024-C	0.36	6E-6		0.103	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
2237	chr1	216633473	216633474	rs6679773	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		1q41	intergenic	rs6679773-T	0.136538	6E-6		0.527769	[0.3-0.75] unit decrease	Illumina [640625] (imputed)	N
2238	chr1	216676258	216676259	rs11572842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q41		rs11572842-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2238	chr1	216676258	216676259	rs11572842	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q41	Intergenic	rs11572842-T	0.6573	4E-8	(MTAG)	0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2238	chr1	216688084	216688085	rs10863246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q41	Intergenic	rs10863246-A	0.3271	1E-12	(MTAG)	0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2238	chr1	216693262	216693263	rs1391513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q41		rs1391513-T	0.6911	5E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2238	chr1	216693262	216693263	rs1391513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q41	Intergenic	rs1391513-T	0.6911	6E-13	(MTAG)	0.0102	[0.0075-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2238	chr1	216693790	216693791	rs12027943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q41	Intergenic	rs12027943-C	0.6075	3E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2238	chr1	216700823	216700824	rs12058696	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	1q41	ESRRG	rs12058696-G		4E-6				Illumina [1690491] (imputed)	N
2238	chr1	216714460	216714461	rs7542009	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q41	Intergenic	rs7542009-C	0.7657	1E-8	(MTAG)	0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2238	chr1	216716319	216716320	rs12145418	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	1q41	ESRRG	rs12145418-T	0.274	2E-6	(Recessive model)	1.331	[1.104-1.604]	Illumina [733202]	N
2238	chr1	216716536	216716537	rs12757165	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	1q41	ESRRG	rs12757165-?	NR	1E-7	(additive)			Affymetrix [361034]	N
2238	chr1	216722849	216722850	rs6604635	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	1q41	NR	rs6604635-?	NR	8E-7	(family_Carnobacteriaceae)	0.6716917	[0.42-0.92] unit increase	Affymetrix [210924]	N
2238	chr1	216725131	216725132	rs11117615	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q41	NR	rs11117615-?	NR	3E-10				Affymetrix [NR]	N
2238	chr1	216738787	216738788	rs7553212	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		1q41	ESRRG	rs7553212-?	0.32	7E-6		0.07	[0.031-0.109] unit increase	Illumina [4058415] (imputed)	N
2238	chr1	216756820	216756821	rs17669622	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	1q41	ESRRG	rs17669622-A	0.25	9E-7	(drinks/week)	0.094	[0.049-0.139] unit decrease	Affymetrix [2500000] (imputed)	N
2238	chr1	216773492	216773493	rs72737330	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	1q41	intergenic	rs72737330-C	0.163	9E-7	(AA)	1.003	unit decrease	Illumina [at least 5086170] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	9E-10	(-26 ms)	0.0345536	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	4E-10	(-36 ms)	0.0354928	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	3E-12	(-34 ms)	0.0397907	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	2E-8	(-38 ms)	0.0318331	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	2E-13	(-32 ms)	0.0408547	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2238	chr1	216790523	216790524	rs1532501	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	ESRRG	rs1532501-T	0.528133	1E-11	(-28 ms)	0.0378152	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2239	chr1	216816880	216816881	rs2047429	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q41	NR	rs2047429-T	0.311	7E-9		0.00675095	[0.0045-0.009] unit decrease	NR [9732723] (imputed)	N
2239	chr1	216830127	216830128	rs11117646	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	1q41	NR	rs11117646-T	0.176938	5E-10		0.051247746	[0.035-0.067] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2239	chr1	216830127	216830128	rs11117646	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	1q41	Intergenic	rs11117646-A	0.1962	4E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
2239	chr1	216830127	216830128	rs11117646	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q41	NR	rs11117646-A	NR	5E-8		5.467	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
2239	chr1	216832988	216832989	rs10779271	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	1q41	NR	rs10779271-A	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
2239	chr1	216837240	216837241	rs1953522	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q41	ESRRG	rs1953522-A	NR	2E-8		5.575	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2239	chr1	216848449	216848450	rs150859230	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	1q41	ESRRG	rs150859230-T	0.013	5E-7	(Corticosteroids (nasal) [R01AD])	4.63		Illumina [16500000] (imputed)	N
2239	chr1	216858012	216858013	rs4085154	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	1q41	NR	rs4085154-?	0.55	4E-6		1.5873016	[1.3-1.92]	Illumina [714494]	N
2239	chr1	216871411	216871412	rs17043393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q41	Intergenic	rs17043393-A	0.8399	2E-8	(MTAG)	0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2239	chr1	216871411	216871412	rs17043393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q41	Intergenic	rs17043393-A	0.8396	3E-9	(MTAG)	0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2239	chr1	216871411	216871412	rs17043393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q41	Intergenic	rs17043393-A	0.8315	1E-11	(MTAG)	0.0208	[0.015-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2239	chr1	216871411	216871412	rs17043393	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	1q41	ESRRG	rs17043393-A	NR	1E-8		0.022902483	[0.015-0.031] unit increase	Affymetrix [NR]	N
2239	chr1	216876963	216876964	rs78851238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q41	NR	rs78851238-C	0.17190499999999997	5E-8		0.00933861	[0.006-0.0127] unit increase	Affymetrix [16578495] (imputed)	N
2239	chr1	216877491	216877492	rs2066108	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q41	ESRRG	rs2066108-A	0.167	2E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2239	chr1	216879910	216879911	rs2813711	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q41	ESRRG	rs2813711-A	0.1582	6E-9		0.015477735	[0.01-0.021] unit increase	Illumina [9339358] (imputed)	N
2239	chr1	216903440	216903441	rs34000440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1q41		rs34000440-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2239	chr1	216905300	216905301	rs17043570	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q41	NR	rs17043570-T	0.15925699999999998	4E-12		0.0254051	[0.018-0.033] unit increase	Affymetrix [16580851] (imputed)	N
2239	chr1	216913260	216913261	rs2813703	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1q41	ESRRG	rs2813703-A	0.5741	1E-7		0.0082	[0.0053-0.0111] unit increase	Affymetrix [~ 7740000] (imputed)	N
2239	chr1	216920372	216920373	rs12757183	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q41		rs12757183-T	0.802	1E-9		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
2239	chr1	216920372	216920373	rs12757183	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1q41	ESRRG	rs12757183-T	0.8017	2E-8		0.0140546365	[0.0091-0.019] unit increase	Affymetrix [11514654] (imputed)	N
2240	chr1	216928518	216928519	rs12126082	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	1q41	Intergenic	rs12126082-?	NR	9E-7		1.573	[NR]	Affymetrix [492217] (imputed)	N
2240	chr1	216969576	216969577	rs79131758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	ESRRG	rs79131758-C	0.998	4E-7	(AA)	0.251	unit increase	Illumina [NR] (imputed)	N
2240	chr1	216969576	216969577	rs79131758	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	ESRRG	rs79131758-C	0.998	8E-7	(AA)	1.231	NR unit increase	Illumina [NR] (imputed)	N
2240	chr1	217023500	217023501	rs12095761	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q41	NR	rs12095761-G	0.2306	3E-6	(EA)	0.037	[0.022-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
2240	chr1	217025728	217025729	rs7521231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs7521231-?	NR	3E-13				NR [~ 8900000] (imputed)	N
2240	chr1	217034048	217034049	rs7532370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q41	ESRRG	rs7532370-T	0.200004	2E-13		0.020251488	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2240	chr1	217034048	217034049	rs7532370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q41	ESRRG	rs7532370-T	0.200019	1E-11		0.018593382	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2241	chr1	217058478	217058479	rs1436900	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	1q41	ESRRG	rs1436900-T	NR	7E-6		0.142	[0.058-0.226] unit decrease	Illumina [~ 2740000] (imputed)	N
2241	chr1	217117145	217117146	rs12755398	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	1q41	ESRRG, GPATCH2	rs12755398-?	NR	1E-72		1.293661	[1.26-1.33]	Illumina [13729857] (imputed)	N
2241	chr1	217121512	217121513	rs61818594	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	1q41	ESRRG	rs61818594-A	0.981	4E-6		0.1243	[0.071-0.177] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2241	chr1	217133688	217133689	rs2576221	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q41	NR	rs2576221-?	NR	9E-9				Affymetrix [NR]	N
2241	chr1	217166743	217166744	rs2818766	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q41	NR	rs2818766-?	NR	4E-9				Affymetrix [NR]	N
2241	chr1	217172605	217172606	rs1339221	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	1q41	ESRRG	rs1339221-?		6E-8		1.7857143	[1.45-2.22]	Illumina [341191]	N
2242	chr1	217200882	217200883	rs2377360	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	1q41	ESRRG	rs2377360-G	0.2632403	9E-6	(remission - SSRI treated - 12 weeks)	1.6	[1.39-1.81]	Affymetrix, Illumina [1200000] (imputed)	N
2242	chr1	217220573	217220574	rs11117758	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	1q41		rs11117758-A	NR	4E-9		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
2242	chr1	217220573	217220574	rs11117758	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q41	ESRRG	rs11117758-G	0.79	4E-9	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2242	chr1	217222414	217222415	rs11585774	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q41	ESRRG	rs11585774-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
2242	chr1	217228038	217228039	rs6678584	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	1q41	ESRRG	rs6678584-G	0.03	7E-7	(female)	0.95	[0.58-1.32] unit increase	Illumina [6380737] (imputed)	N
2242	chr1	217266282	217266285	rs146094041	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine age at onset (before 12 years vs after 12 years)	715 Han Chinese ancestry individuals	NA	1q41		rs146094041-?	NR	3E-9		0.053	[0.014-0.2]	Affymetrix [NR]	N
2243	chr1	217318029	217318030	rs1502359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q41	NR	rs1502359-G	NR	3E-10		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2243	chr1	217334838	217334839	rs11117781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q41		rs11117781-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2243	chr1	217351405	217351406	rs11117784	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	1q41	ESRRG, GPATCH2	rs11117784-C	0.69	8E-6		47.787292	[26.79-68.79] kcal/day decrease	Affymetrix [491265]	N
2243	chr1	217356400	217356401	rs2221285	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	1q41	ESRRG	rs2221285-?	NR	9E-6	(EA)	2.15	[1.19-3.11] unit increase	Affymetrix, Illumina [2033301]	N
2243	chr1	217357648	217357649	rs12042302	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (anhedonia) (ordinal trait)	148,752 European ancestry individuals	NA	1q41	ESRRG	rs12042302-T	0.848	3E-8		0.016	[0.010-0.022] unit decrease	NR [9413637] (imputed)	N
2243	chr1	217388032	217388033	rs6694391	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q41	NR	rs6694391-?		9E-6				Illumina [4322238] (imputed)	N
2243	chr1	217421014	217421015	rs12058987	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	1q41	ESRRG	rs12058987-?		1E-6	(French Canadians)	2.4816482		Illumina [7614484] (imputed)	N
2243	chr1	217436180	217436181	rs1466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q41		rs1466-T	NR	1E-20		0.0237	[0.019-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2243	chr1	217436180	217436181	rs1466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q41		rs1466-T	NR	6E-24		0.0247	[0.02-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs1466-T	0.135814	3E-23				Affymetrix, Illumina [24332387] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q41	NR	rs1466-T	0.149201	2E-22		0.025141	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs1466-T	0.135965	4E-27				Affymetrix, Illumina [24653286] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q41	NR	rs1466-T	0.148922	9E-26		0.027015	[0.022-0.032] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs1466-T	0.136618	2E-29				Affymetrix, Illumina [24558453] (imputed)	N
2243	chr1	217436180	217436181	rs1466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q41	NR	rs1466-T	0.149045	7E-29		0.028732	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2243	chr1	217436180	217436181	rs1466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q41		rs1466-?	NR	6E-22				NR [~ 8900000] (imputed)	N
2243	chr1	217440699	217440700	rs76298137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q41		rs76298137-T	NR	6E-22		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2243	chr1	217443062	217443063	rs4436446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	1q41		rs4436446-T	0.249537	3E-8		0.0196103	[0.013-0.027] unit increase	Illumina [13478948] (imputed)	N
2243	chr1	217443062	217443063	rs4436446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	1q41		rs4436446-T	0.249212	3E-8		0.0198781	[0.013-0.027] unit increase	Illumina [13478961] (imputed)	N
2243	chr1	217445647	217445648	rs76799473	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs76799473-T	0.02265	9E-9	(NUCB1)	0.02323	NR unit increase	Illumina [1671387] (imputed)	N
2244	chr1	217453688	217453689	rs144346736	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q41	intergenic	rs144346736-A		1E-22		0.031	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2244	chr1	217471418	217471419	rs1497826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q41		rs1497826-G	NR	4E-21		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2244	chr1	217471418	217471419	rs1497826	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q41	NR	rs1497826-G	0.3736	3E-15		0.001792	[0.0013-0.0023] unit increase	Affymetrix [NR] (imputed)	N
2244	chr1	217472264	217472265	rs17654742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q41		rs17654742-A	0.154147	6E-21		0.028806562	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2244	chr1	217472264	217472265	rs17654742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q41		rs17654742-A	0.154143	2E-23		0.030623674	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2244	chr1	217472264	217472265	rs17654742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q41		rs17654742-A	0.154145	9E-25		0.031598486	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2244	chr1	217523111	217523112	rs2646810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	1q41		rs2646810-G	NR	3E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2244	chr1	217527023	217527024	rs1497828	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	1q41	ESRRG, GPATCH2	rs1497828-?	0.63	4E-6		1.41	[1.22-1.64]	Affymetrix [832357]	N
2244	chr1	217532371	217532372	rs144188351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q41		rs144188351-C	NR	2E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2245	chr1	217653445	217653446	rs34919320	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	1q41		rs34919320-G	0.2602	3E-7		5.128	z score increase	Illumina [7275796] (imputed)	N
2245	chr1	217665750	217665751	rs41309629	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q41	GPATCH2	rs41309629-C	0.0170386602242206	3E-6	(F_Acidaminococcaceae_HB)	0.996311	[0.58-1.41] unit decrease	Illumina [7711310] (imputed)	N
2246	chr1	217711784	217711785	rs2990535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs2990535-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2246	chr1	217716876	217716877	rs7533141	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	1q41	NR	rs7533141-?	NR	3E-7	(AA)	1.47	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2246	chr1	217718131	217718132	rs2059397	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q41	GPATCH2	rs2059397-G	0.03	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
2246	chr1	217718788	217718789	rs12408022	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q41	GPATCH2	rs12408022-T	0.26	2E-10		0.198	[0.14-0.26] unit increase	Affymetrix [~ 9800000] (imputed)	N
2246	chr1	217722448	217722449	rs17046596	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q41	GPATCH2	rs17046596-A		2E-8		0.151	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2246	chr1	217722890	217722890	rs11454451	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	1q41	GPATCH2	rs11454451-CT	0.26	1E-11		0.2558	[0.18-0.33] unit increase	Affymetrix [19941912] (imputed)	N
2246	chr1	217739035	217739036	rs2042525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q41		rs2042525-C	NR	4E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2246	chr1	217762290	217762291	rs76358930	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	1q41	GPATCH2	rs76358930-T	0.007	4E-6		2.91	[1.84-4.60]	Illumina [9327222] (imputed)	N
2246	chr1	217825832	217825833	rs186897665	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1q41		rs186897665-C	0.99239	4E-9		0.151869	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
2247	chr1	217914388	217914389	rs12120588	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1q41	SPATA17	rs12120588-T	0.42	6E-6	(women)	0.077	[0.044-0.11] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
2247	chr1	217923201	217923202	rs115680216	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SPATA17	rs115680216-?	NR	3E-8		1.31032	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2248	chr1	218020082	218020083	rs11811226	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	SPATA17	rs11811226-A	0.5559	2E-16		0.0156	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
2248	chr1	218020082	218020083	rs11811226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs11811226-?	NR	4E-12				NR [~ 8900000] (imputed)	N
2248	chr1	218095531	218095531	rs202187247	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q41	NR	rs202187247-?	NR	8E-6	(male)	0.1327	[0.074-0.191] unit decrease	Illumina [11133794] (imputed)	N
2249	chr1	218108430	218108431	rs191590039	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	1q41	NR	rs191590039-?	NR	4E-6		1.871	[1.03-2.71] unit increase	Illumina [at least 560000] (imputed)	N
2249	chr1	218156773	218156774	rs72732858	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs72732858-G	0.01045	9E-9	(HSD17B4)	1.396	NR unit increase	Illumina [1671387] (imputed)	N
2249	chr1	218156773	218156774	rs72732858	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs72732858-G	0.01045	1E-11	(AGXT)	7.158	NR unit increase	Illumina [1671387] (imputed)	N
2250	chr1	218247648	218247649	rs146984913	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	1q41		rs146984913-A	NR	1E-9	(general)			Illumina [5894709] (imputed)	N
2250	chr1	218250572	218250573	rs17700654	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	1q41		rs17700654-C	NR	1E-10	(general)			Illumina [5894709] (imputed)	N
2251	chr1	218458057	218458058	rs3753592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RRP15	rs3753592-C	NR	3E-8		0.0156308	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
2251	chr1	218460643	218460644	rs17047574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q41		rs17047574-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2251	chr1	218492120	218492121	rs3121580	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1q41	NR	rs3121580-T	0.1572	8E-7		0.9953	[0.6-1.39] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2251	chr1	218492120	218492121	rs3121580	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	RRP15	rs3121580-T	0.1728	3E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
2251	chr1	218492120	218492121	rs3121580	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1q41	RRP15	rs3121580-C	0.83	5E-6	(conditional on rs3009947)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
2252	chr1	218504466	218504466	rs200918227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q41		rs200918227-AT	NR	5E-9		0.0249	[0.017-0.033] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2252	chr1	218519928	218519928	rs113711540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs113711540-AAAAC	NR	1E-12		0.0225596	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218519928	218519928	rs113711540	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	TGFB2	rs113711540-A	0.7294	1E-11		0.1037	[0.073-0.135] unit increase	Affymetrix [~ 11900000] (imputed)	N
2252	chr1	218520994	218520995	rs6658835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	1q41		rs6658835-G	NR	1E-8		0.1375	[0.09-0.185] unit increase	Affymetrix, Illumina [25843950] (imputed)	N
2252	chr1	218520994	218520995	rs6658835	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	TGFB2	rs6658835-A	0.7308	9E-20		0.018	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
2252	chr1	218520994	218520995	rs6658835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs6658835-?	NR	2E-17				NR [~ 8900000] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	TGFB2	rs2799098-A	0.8201	4E-6		0.0141	[0.008-0.0202] unit increase	Affymetrix [19819130] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	TGFB2	rs2799098-A	0.8201	5E-20		0.0285	[0.022-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	TGFB2	rs2799098-G	0.18046	1E-12		0.0170716	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs2799098-?	NR	1E-29				NR [~ 8900000] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs2799098-?	NR	7E-12				NR [~ 8900000] (imputed)	N
2252	chr1	218521608	218521609	rs2799098	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs2799098-?	NR	3E-13		0.0187868	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
2252	chr1	218523729	218523730	rs1417488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	TGFB2	rs1417488-T	NR	2E-10		0.022308	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
2252	chr1	218523729	218523730	rs1417488	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	1q41		rs1417488-C	0.744181	1E-8		0.057915	[0.037-0.078] increase	Affymetrix [11014269] (imputed)	N
2252	chr1	218523729	218523730	rs1417488	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1q41	TGFB2	rs1417488-C	0.75	2E-9		0.006	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
2252	chr1	218523729	218523730	rs1417488	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1q41	TGFB2	rs1417488-C	0.75	3E-9		0.00625	[0.0042-0.0083] unit decrease	Affymetrix [at least 8002429] (imputed)	N
2252	chr1	218523729	218523730	rs1417488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs1417488-?	NR	5E-32				NR [~ 8900000] (imputed)	N
2252	chr1	218524640	218524641	rs11579807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs11579807-C	NR	2E-9		0.0230005	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218525587	218525588	rs17047703	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	TGFB2	rs17047703-C	0.7685	1E-10		0.105	[0.073-0.137] unit increase	Affymetrix [~ 11900000] (imputed)	N
2252	chr1	218526227	218526228	rs4846476	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	1q41	TGFB2	rs4846476-?	NA	1E-13		2.03	[1.5-2.56] unit increase	Affymetrix [5541230] (imputed)	N
2252	chr1	218526227	218526228	rs4846476	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	1q41	TGFB2	rs4846476-C	0.26	5E-8		1.94	[1.25-2.63] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2252	chr1	218537309	218537310	rs12078363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q41	NR	rs12078363-T	0.680824	1E-21		0.0276185	[0.022-0.034] unit increase	Affymetrix [16580851] (imputed)	N
2252	chr1	218541991	218541992	rs61823391	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	1q41	NR	rs61823391-T	0.682879	4E-16		0.0110331	[0.0083-0.0137] unit increase	Affymetrix [16578495] (imputed)	N
2252	chr1	218542058	218542059	rs6662137	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	1q41	NR	rs6662137-G	NR	9E-10		0.0164	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2252	chr1	218546169	218546170	rs12088448	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q41	TGFB2	rs12088448-A	0.6235	6E-9		0.1631	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
2252	chr1	218548520	218548521	rs17558745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs17558745-T	NR	2E-9		0.018266	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218548749	218548749	rs549035841	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	1q41	NR	rs549035841-C	0.708995	4E-9		0.0162859	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
2252	chr1	218549353	218549354	rs35981664	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q41	TGFB2	rs35981664-A	0.6914	1E-20		0.1542	[0.12-0.19] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2252	chr1	218567441	218567442	rs149147748	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	1q41	NR	rs149147748-?	NR	3E-6		0.166	[0.097-0.235] unit decrease	Illumina [at least 560000] (imputed)	N
2252	chr1	218571756	218571757	rs61823428	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs61823428-A	0.865	1E-6		0.062	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218572003	218572004	rs11118102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs11118102-A	0.134	1E-6		0.061	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218575175	218575176	rs116811962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs116811962-T	NR	2E-10		0.0431584	[0.03-0.057] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218575201	218575202	rs1317681	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	1q41	NR	rs1317681-G	0.17	2E-6	(EA)	3.57	[3-4.14]	Illumina [905956]	N
2252	chr1	218575201	218575202	rs1317681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1317681-A	0.844	6E-7		0.059	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218575886	218575887	rs10746379	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10746379-A	0.822	2E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218575886	218575887	rs10746379	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10746379-A	0.824	3E-6		0.055	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218581616	218581617	rs2799083	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	1q41	TGFB2, LOC728463, LOC100130251	rs2799083-?	NR	2E-6		2.27	[1.61-3.19]	Illumina [457310]	N
2252	chr1	218582777	218582778	rs17047804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs17047804-T	0.842	3E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218582777	218582778	rs17047804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs17047804-T	0.845	2E-7		0.065	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218588278	218588279	rs10863398	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10863398-A	0.207	2E-7		0.012	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218588278	218588279	rs10863398	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10863398-A	0.202	1E-8		0.067	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218591622	218591623	rs11466399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs11466399-A	NR	3E-15		0.0245527	[0.018-0.031] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218591622	218591623	rs11466399	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs11466399-A	0.337	5E-6		0.009	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218593036	218593037	rs12048582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs12048582-T	0.193	2E-8		0.012	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218593036	218593037	rs12048582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs12048582-T	0.194	3E-7		0.056	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218594483	218594484	rs181424343	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1q41	Intergenic	rs181424343-A	NR	8E-8	(within families)	5.375	unit increase	Affymetrix [up to 15107142] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q41		rs12048049-G	NR	1E-14		0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	4E-6	(men)	0.0286	[0.016-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	2E-9		0.0243	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	8E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	5E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	1E-8	(men)	0.0303	[0.02-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	TGFB2	rs12048049-C	0.6885	1E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	TGFB2	rs12048049-C	0.7108	6E-8	(EA, men)	0.0282	[0.018-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	TGFB2	rs12048049-C	0.7108	2E-6	(EA,women)	0.0228	[0.013-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2252	chr1	218597296	218597297	rs12048049	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	TGFB2	rs12048049-C	0.7108	2E-12	(EA)	0.0256	[0.018-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2252	chr1	218597631	218597632	rs72738830	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs72738830-A	0.183	7E-7		0.012	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218597858	218597859	rs1342586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1342586-T	0.811	9E-9		0.013	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218597858	218597859	rs1342586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1342586-T	0.81	4E-7		0.056	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218598327	218598328	rs4846478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846478-C	0.713	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218598327	218598328	rs4846478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846478-C	0.714	8E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218598409	218598410	rs4846479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846479-T	0.713	3E-8		0.011	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218598409	218598410	rs4846479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846479-T	0.714	1E-6		0.046	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218598468	218598469	rs4846480	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846480-A	0.713	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218598468	218598469	rs4846480	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs4846480-A	0.714	8E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218598468	218598469	rs4846480	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	1q41	TGFB2	rs4846480-A	0.75	8E-9				Illumina [up to 701491] (imputed)	N
2252	chr1	218600418	218600419	rs6658473	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs6658473-T	0.287	2E-8		0.011	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218600418	218600419	rs6658473	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs6658473-T	0.286	8E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218604677	218604678	rs1890995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q41	NR	rs1890995-?	NR	1E-6		0.02841679	[0.017-0.04] unit increase	Illumina [34656550] (imputed)	N
2252	chr1	218604677	218604678	rs1890995	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1890995-A	0.287	3E-8		0.011	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218604677	218604678	rs1890995	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1890995-A	0.286	9E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218604677	218604678	rs1890995	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	1q41	TGFB2	rs1890995-A	0.73	6E-13		0.033	[0.019-0.047] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2252	chr1	218604708	218604709	rs1890994	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs1890994-T	0.615	6E-7		0.012	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218605460	218605461	rs10482792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10482792-A	0.287	3E-8		0.011	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218605460	218605461	rs10482792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10482792-A	0.286	9E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs10482795-?	NR	3E-99				NR [~ 8900000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.3004	7E-9		0.0251	[0.017-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.3004	6E-6	(women)	0.0302	[0.017-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.3004	1E-7	(men)	0.0344	[0.022-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.3131	4E-7	(women)	0.0385	[0.024-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.3004	1E-8		0.0283	[0.019-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-A	0.2976	1E-7	(men)	0.0394	[0.025-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-?	0.3004	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-?	0.3004	3E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605608	218605609	rs10482795	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10482795-?	0.3004	3E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218605634	218605635	rs10482796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10482796-T	0.809	1E-8		0.013	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218605634	218605635	rs10482796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs10482796-T	0.809	5E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218605955	218605956	rs9308385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs9308385-T	0.819	5E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218607531	218607532	rs10482810	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FEV1/FVC)	371,898 European ancestry individuals	NA	1q41		rs10482810-?	NR	3E-18		0.114371	[0.089-0.14] unit decrease	NR [9800000] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q41		rs6684205-G	NR	7E-79		0.0269	[0.024-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q41	TGFB2	rs6684205-?	NR	8E-27		0.034995954	[0.029-0.041] unit increase	Illumina [27896057] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q41	NR	rs6684205-?	NR	3E-8		0.03206746	[0.021-0.043] unit increase	Illumina [34656550] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs6684205-G	0.2882	1E-10	(EA, men)	0.0401	[0.028-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	TGFB2, LYPLAL1	rs6684205-G	0.2905	1E-11	(EA, men)	0.0465	[0.033-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs6684205-?	0.2882	3E-11	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218609701	218609702	rs6684205	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q41	TGFB2	rs6684205-A	0.71	2E-12		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
2252	chr1	218611877	218611878	rs2798631	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 23 levels	4,201 Taiwanese ancestry individuals	NA	1q41		rs2798631-G	0.75	5E-7		0.115	[0.07-0.16] unit increase	Affymetrix [7897704] (imputed)	N
2252	chr1	218611877	218611878	rs2798631	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs2798631-A	0.551	1E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218614904	218614905	rs900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs900-A	0.713	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218614904	218614905	rs900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs900-A	0.714	1E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218615450	218615451	rs991967	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	1q41	NR	rs991967-?	NR	3E-8		0.03218304	[0.021-0.044] unit increase	Illumina [34656550] (imputed)	N
2252	chr1	218615450	218615451	rs991967	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	TGFB2	rs991967-C	0.294651	7E-17	(females)	0.0242	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2252	chr1	218615450	218615451	rs991967	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	TGFB2	rs991967-C	0.294651	2E-10		0.01246	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2252	chr1	218615450	218615451	rs991967	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	TGFB2	rs991967-C	0.294651	1E-15	(females)	0.02374	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2252	chr1	218615450	218615451	rs991967	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	TGFB2	rs991967-C	0.294651	1E-10		0.01283	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2252	chr1	218615450	218615451	rs991967	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	TGFB2	rs991967-A	0.7064	6E-9	(EA)	0.0223	[0.015-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2252	chr1	218615450	218615451	rs991967	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	TGFB2	rs991967-A	0.7064	4E-7	(EA, women)	0.0249	[0.015-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2252	chr1	218615450	218615451	rs991967	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q41	TGFB2	rs991967-A	0.717	2E-26		0.034	[0.028-0.040] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2252	chr1	218616013	218616014	rs1418556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	TGFB2	rs1418556-T	NR	6E-12		0.023754	[0.017-0.031] unit increase	Affymetrix [321114] (imputed)	N
2252	chr1	218616013	218616014	rs1418556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	TGFB2	rs1418556-T	NR	9E-13		0.024438	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
2252	chr1	218617134	218617135	rs1046017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q41		rs1046017-G	0.74962	2E-25		0.0240094	[0.019-0.029] unit increase	Illumina [13479295] (imputed)	N
2252	chr1	218617542	218617543	rs6704255	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs6704255-A	0.311	5E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218617899	218617900	rs6683598	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs6683598-?	NR	3E-21				Affymetrix [~ 8270000] (imputed)	N
2252	chr1	218617899	218617900	rs6683598	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	TGFB2	rs6683598-T	0.574	6E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218619645	218619646	rs1342590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1342590-T	0.425	6E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218620746	218620747	rs1473526	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1473526-T	0.408	4E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218620746	218620747	rs1473526	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1473526-T	0.406	2E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218622100	218622101	rs2015850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs2015850-A	0.716	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218622100	218622101	rs2015850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs2015850-A	0.718	5E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218622318	218622319	rs1473527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1473527-A	0.508	2E-6		0.009	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218622638	218622639	rs12023953	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12023953-T	0.811	1E-8		0.013	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218622638	218622639	rs12023953	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12023953-T	0.81	6E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218622948	218622949	rs79112217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	TGFB2	rs79112217-C	NR	3E-9		0.0272916	[0.018-0.036] unit increase	Affymetrix [321114] (imputed)	N
2252	chr1	218622948	218622949	rs79112217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	TGFB2	rs79112217-C	NR	1E-8		0.0260844	[0.017-0.035] unit increase	Affymetrix [321016] (imputed)	N
2252	chr1	218623093	218623094	rs6697759	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	1q41		rs6697759-T	0.439535	4E-7		1.2991	NR	Affymetrix [7846216] (imputed)	N
2252	chr1	218623093	218623094	rs6697759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6697759-T	0.406	2E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218623274	218623275	rs6657698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6657698-A	0.412	6E-8		0.01	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218623274	218623275	rs6657698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6657698-A	0.409	4E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218623887	218623888	rs72738834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738834-A	0.81	7E-9		0.013	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218623887	218623888	rs72738834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738834-A	0.809	5E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10429950-C	0.2791	5E-13	(EA)	0.03	[0.022-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	TGFB2, LYPLAL1	rs10429950-C	0.2791	8E-13	(EA)	0.0343	[0.025-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	TGFB2, LYPLAL1	rs10429950-?	0.2791	2E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	1q41	TGFB2	rs10429950-T	0.73	2E-10		1.11	[1.07,1.14]	Affymetrix, Illumina [NR] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs10429950-T	0.583	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218624532	218624533	rs10429950	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs10429950-T	0.586	2E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218626619	218626620	rs7515360	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7515360-A	0.291	4E-8		0.011	unit increase	Illumina [NR] (imputed)	N
2252	chr1	218626619	218626620	rs7515360	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7515360-A	0.29	3E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
2252	chr1	218627320	218627321	rs7549303	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7549303-C	0.709	4E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218627320	218627321	rs7549303	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7549303-C	0.71	3E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
2252	chr1	218628023	218628024	rs6666381	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6666381-A	0.377	8E-7		0.009	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218629028	218629029	rs1318580	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1318580-T	0.622	8E-7		0.009	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218629332	218629333	rs1797069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1797069-A	0.732	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218630200	218630201	rs1797070	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1797070-A	0.293	7E-8		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218630200	218630201	rs1797070	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1797070-A	0.291	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	1q41		rs6604614-C	NR	1E-16	(East Asian)			Affymetrix [NR] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	intergenic	rs6604614-C	0.7154	5E-29		0.0232	[0.019-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q41	TGFB2	rs6604614-C	0.7152	2E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	TGFB2	rs6604614-C	0.7152	4E-6		0.012	[0.0069-0.0171] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	TGFB2	rs6604614-C	0.7152	6E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr1	218631451	218631452	rs6604614	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604614-C	0.628	2E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218632367	218632368	rs4846483	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs4846483-A	0.59	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218634361	218634362	rs6604615	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604615-T	0.681	8E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218634786	218634787	rs1108548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	TGFB2	rs1108548-G	NR	2E-9		0.0191884	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
2253	chr1	218634786	218634787	rs1108548	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q41	NR	rs1108548-?	NR	7E-6	(female)	0.12088	[0.068-0.174] unit increase	Affymetrix [7794483] (imputed)	N
2253	chr1	218634786	218634787	rs1108548	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q41	NR	rs1108548-?	NR	3E-10		0.1555	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
2253	chr1	218634786	218634787	rs1108548	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q41	NR	rs1108548-?	NR	2E-6	(male)	0.18443	[0.11-0.26] unit increase	Affymetrix [7794483] (imputed)	N
2253	chr1	218634786	218634787	rs1108548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1108548-A	0.629	2E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218635078	218635079	rs7512679	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7512679-T	0.323	5E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218635078	218635079	rs7512679	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	1q41	TGFB2	rs7512679-T	NR	5E-7	(%LAA-950, All)	0.092	[0.057-0.127] unit increase	Illumina [7600000] (imputed)	N
2253	chr1	218638290	218638291	rs10047116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs10047116-A	0.532	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218639588	218639589	rs7547759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7547759-T	0.756	7E-8		0.017	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218639588	218639589	rs7547759	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7547759-T	0.755	5E-8		0.083	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218643140	218643141	rs575544	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs575544-A	0.532	4E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218645321	218645322	rs1690791	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1690791-A	0.468	4E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218645872	218645873	rs7526672	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7526672-T	0.754	6E-8		0.017	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218645872	218645873	rs7526672	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7526672-T	0.754	6E-8		0.083	NR unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218647385	218647386	rs623356	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs623356-T	0.551	4E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218648555	218648556	rs1764705	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1764705-T	0.443	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218650782	218650783	rs12743469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12743469-A	0.894	4E-7		0.017	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218650782	218650783	rs12743469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12743469-A	0.896	2E-6		0.078	NR unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218654506	218654507	rs6693039	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6693039-C	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218656285	218656286	rs35450021	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs35450021-T	0.084	2E-7		0.019	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218656285	218656286	rs35450021	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs35450021-T	0.082	5E-7		0.088	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218658357	218658358	rs72738837	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738837-T	0.084	2E-7		0.019	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218658357	218658358	rs72738837	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738837-T	0.082	5E-7		0.088	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218658375	218658376	rs72738838	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738838-C	0.084	2E-7		0.019	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218658375	218658376	rs72738838	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738838-C	0.082	5E-7		0.088	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218660276	218660277	rs12040654	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12040654-A	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218664807	218664808	rs4012266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs4012266-A	0.166	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218666428	218666429	rs6656288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6656288-A	0.917	1E-7		0.019	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218666428	218666429	rs6656288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6656288-A	0.918	6E-7		0.088	NR unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218668878	218668879	rs12406058	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	1q41		rs12406058-A	0.04	1E-10		1.52		NR [NR] (imputed)	N
2253	chr1	218670140	218670141	rs1015275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1015275-C	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218670356	218670357	rs622912	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs622912-T	0.547	2E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218672806	218672807	rs72738842	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738842-A	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218673256	218673257	rs11118112	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs11118112-T	0.165	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218673592	218673593	rs12046780	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12046780-A	0.832	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218673814	218673815	rs12039922	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12039922-A	0.165	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218674001	218674002	rs12025796	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12025796-A	0.165	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218674235	218674236	rs72738843	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738843-T	0.832	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218674596	218674597	rs72738844	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738844-T	0.835	1E-6		0.013	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218674874	218674875	rs6666152	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6666152-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218674929	218674930	rs6668599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6668599-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218675404	218675405	rs6656475	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6656475-A	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218675517	218675518	rs6604617	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604617-C	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218675583	218675584	rs1962709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs1962709-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2253	chr1	218676232	218676233	rs7537063	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7537063-T	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218676443	218676444	rs72738847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738847-T	0.106	5E-8		0.018	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218676443	218676444	rs72738847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738847-T	0.103	4E-7		0.085	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218676682	218676683	rs882251	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs882251-C	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218676963	218676964	rs882252	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs882252-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218677058	218677059	rs12041344	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12041344-T	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218677802	218677803	rs150751768	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs150751768-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218678298	218678299	rs12039493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12039493-A	0.175	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218678622	218678623	rs56398881	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs56398881-T	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218678700	218678701	rs6690726	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6690726-A	0.17	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218679389	218679390	rs7536603	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7536603-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218679685	218679686	rs11118114	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs11118114-A	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218679729	218679730	rs12563082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12563082-T	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218680737	218680738	rs7528401	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7528401-C	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218680975	218680976	rs10429951	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs10429951-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218681044	218681045	rs72738850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738850-A	0.106	6E-8		0.018	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681044	218681045	rs72738850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738850-A	0.103	4E-7		0.085	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681097	218681098	rs10429952	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs10429952-T	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681308	218681309	rs72738851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738851-T	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218681374	218681375	rs112756090	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs112756090-T	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681501	218681502	rs7553124	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7553124-A	0.171	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681551	218681552	rs7553145	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7553145-T	0.171	3E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218681970	218681971	rs796395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q41		rs796395-A	NR	1E-11		0.1728	[0.12-0.22] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
2253	chr1	218681970	218681971	rs796395	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs796395-A	0.449	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218682114	218682115	rs7531382	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7531382-T	0.881	4E-7		0.015	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218682260	218682261	rs72738854	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738854-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218682826	218682827	rs6675293	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6675293-A	0.834	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218683527	218683528	rs7532546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7532546-A	0.834	3E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218683535	218683536	rs7532551	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7532551-A	0.831	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218683683	218683684	rs72738855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738855-T	0.083	1E-7		0.019	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218683683	218683684	rs72738855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738855-T	0.082	9E-7		0.087	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218684016	218684017	rs7545447	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7545447-A	0.169	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218684839	218684840	rs12047243	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12047243-A	0.836	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218684845	218684846	rs12026168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12026168-C	0.837	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218684849	218684850	rs12026169	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12026169-A	0.164	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218685054	218685055	rs2993047	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	1q41	C1orf143, MIR548F3	rs2993047-A	0.591769218872966	4E-12		0.0327	[0.024-0.042] SD decrease	Illumina [22400000] (imputed)	N
2253	chr1	218685059	218685060	rs12040383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12040383-A	0.169	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218685130	218685131	rs12048013	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12048013-A	0.828	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218685231	218685232	rs2964991	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs2964991-T	0.448	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218685287	218685288	rs12048052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12048052-A	0.828	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218685374	218685375	rs12044802	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12044802-T	0.84	4E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218685718	218685719	rs72738857	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738857-T	0.83	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218685994	218685995	rs12045026	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12045026-T	0.827	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218686742	218686743	rs6604620	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604620-C	0.179	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218686954	218686955	rs6604621	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604621-A	0.175	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218687794	218687795	rs12022110	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12022110-A	0.83	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218688835	218688836	rs6604623	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6604623-A	0.83	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218689154	218689155	rs3009947	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1q41	TGFB2	rs3009947-C	0.5	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
2253	chr1	218689154	218689155	rs3009947	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1q41	TGFB2, LYPLAL1	rs3009947-T	0.48	9E-9	(EA)	0.11	0.07-0.15 unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218689154	218689155	rs3009947	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1q41	NR	rs3009947-C	0.51	5E-6	(conditioned on rs993925)	0.018	[0.01-0.026] unit decrease	Affymetrix [27624732] (imputed)	N
2253	chr1	218689154	218689155	rs3009947	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs3009947-T	0.478	9E-8		0.009	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218689285	218689286	rs7516501	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7516501-A	0.17	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218689373	218689374	rs4357586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs4357586-T	0.83	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218689458	218689459	rs12568141	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12568141-A	0.17	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218690576	218690577	rs6665024	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6665024-A	0.693	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218690851	218690852	rs12032263	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12032263-T	0.17	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218690947	218690948	rs550238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs550238-A	0.455	9E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218691131	218691132	rs12022585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12022585-A	0.17	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218691313	218691314	rs12033060	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12033060-T	0.307	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218691501	218691502	rs12025970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12025970-A	0.83	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218693451	218693452	rs12565438	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12565438-T	0.171	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218693690	218693691	rs11118118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs11118118-T	0.829	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218693811	218693812	rs72738861	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738861-T	0.085	2E-7		0.019	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218693811	218693812	rs72738861	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738861-T	0.084	1E-6		0.085	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218694624	218694625	rs12030863	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12030863-T	0.171	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218694643	218694644	rs12023695	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12023695-A	0.829	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218694990	218694991	rs12023777	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12023777-A	0.83	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218695046	218695047	rs12045035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12045035-A	0.17	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218696902	218696903	rs41313742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs41313742-T	0.109	1E-7		0.018	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218696902	218696903	rs41313742	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs41313742-T	0.107	4E-7		0.084	NR unit increase	Illumina [NR] (imputed)	N
2253	chr1	218697981	218697982	rs12023501	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs12023501-A	0.158	8E-7		0.013	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218698026	218698027	rs1690789	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1690789-T	0.455	8E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218698026	218698027	rs1690789	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	1q41	TGFB2	rs1690789-C	0.51	8E-9	(Moderate Centrilobular)	0.02	[0.016-0.024] unit decrease	Illumina [6942916] (imputed)	N
2253	chr1	218698026	218698027	rs1690789	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	1q41	TGFB2	rs1690789-C	0.51	7E-9	(normal, EA)	0.03	[0.022-0.038] unit increase	Illumina [6942916] (imputed)	N
2253	chr1	218698026	218698027	rs1690789	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	1q41	TGFB2	rs1690789-C	0.51	3E-9	(Moderate Centrilobular, EA)	0.02	[0.016-0.024] unit decrease	Illumina [6942916] (imputed)	N
2253	chr1	218698026	218698027	rs1690789	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	1q41	TGFB2	rs1690789-C	0.51	3E-8	(normal)	0.03	[0.022-0.038] unit increase	Illumina [6942916] (imputed)	N
2253	chr1	218698632	218698633	rs36034473	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q41	MIR548F3	rs36034473-?	NR	3E-12		0.05157084	[0.037-0.066] unit increase	Illumina [27896057] (imputed)	N
2253	chr1	218698727	218698728	rs72738863	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs72738863-A	0.158	7E-7		0.013	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218700383	218700384	rs6681129	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6681129-T	0.154	4E-7		0.013	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218700527	218700528	rs7524827	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs7524827-A	0.842	6E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218701400	218701401	rs1690790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs1690790-A	0.407	4E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218701450	218701451	rs60831762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs60831762-A	0.843	6E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
2253	chr1	218705813	218705814	rs1018040	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	1q41	intergenic	rs1018040-?	NR	8E-6	(binary)			Perlegen [429981]	N
2253	chr1	218705813	218705814	rs1018040	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	1q41	intergenic	rs1018040-?	NR	5E-6	(binary)			Perlegen [429981]	N
2253	chr1	218738102	218738103	rs6666438	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs6666438-T	0.531	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
2253	chr1	218738557	218738558	rs35351285	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	U3	rs35351285-G	NR	6E-11		0.0284662	[0.02-0.037] unit increase	Affymetrix [321016] (imputed)	N
2254	chr1	218825213	218825214	rs9728907	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	U3	rs9728907-G	NR	1E-8		0.0252752	[0.017-0.034] unit increase	Affymetrix [321016] (imputed)	N
2254	chr1	218827854	218827855	rs1481345	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q41	MIR548F3	rs1481345-?	NR	5E-10		0.0310475	[0.021-0.041] unit decrease	Illumina [4804024] (imputed)	N
2254	chr1	218833889	218833890	rs17048367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs17048367-?	NR	8E-18				NR [~ 8900000] (imputed)	N
2254	chr1	218841310	218841311	rs28646156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs28646156-?	NR	3E-19				NR [~ 8900000] (imputed)	N
2254	chr1	218844905	218844906	rs1159268	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	1q41	LOC643723, LOC728463, RRP15, TGFB2	rs1159268-A	0.3513	4E-8		1.17	[1.08-1.26]	Illumina [7300000] (imputed)	N
2254	chr1	218847989	218847990	rs6684868	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	1q41	TGFB2	rs6684868-A	0.46	2E-10		1.15	[1.10-1.20]	Illumina [up to 7441713] (imputed)	N
2254	chr1	218853270	218853271	rs28610018	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	1q41		rs28610018-G	0.41	5E-10		0.028	L decrease	Affymetrix [NR] (imputed)	N
2254	chr1	218855028	218855029	rs28613267	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	MIR548F3/TGFB2	rs28613267-C	0.5112	7E-11		0.0154	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
2254	chr1	218855028	218855029	rs28613267	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	MIR548F3/TGFB2	rs28613267-C	0.5112	9E-13		0.0168	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
2254	chr1	218859415	218859416	rs6674686	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q41	NR	rs6674686-A	0.349386	8E-10		0.0196485	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
2254	chr1	218860067	218860068	rs993925	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	1q41	TGFB2	rs993925-T	0.31	1E-8	(FEV1/FVC)	0.034	[0.022-0.046] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2254	chr1	218861568	218861569	rs76513454	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	1q41	Intergenic	rs76513454-C	0.01	2E-6		2.17	[1.33-3.01] unit decrease	Illumina [~ 31000000] (imputed)	N
2254	chr1	218870265	218870266	rs76304129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	U3	rs76304129-C	NR	2E-10		0.0394924	[0.027-0.052] unit increase	Affymetrix [321016] (imputed)	N
2254	chr1	218872623	218872624	rs1383756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	U3	rs1383756-T	NR	3E-8		0.0277859	[0.018-0.038] unit decrease	Affymetrix [323123] (imputed)	N
2254	chr1	218879782	218879783	rs72742475	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs72742475-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2254	chr1	218889171	218889172	rs1987596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs1987596-?	NR	3E-16				NR [~ 8900000] (imputed)	N
2255	chr1	218896120	218896121	rs28498926	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	1q41		rs28498926-?	NR	5E-6		0.06	[0.033-0.087] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2255	chr1	218910703	218910704	rs57548624	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q41		rs57548624-G	0.19	6E-21		9.39	z score increase	Affymetrix [9061022] (imputed)	N
2255	chr1	218911995	218911996	rs28562774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-412H9.1	rs28562774-G	NR	7E-11		0.0261099	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
2255	chr1	218931904	218931905	rs12037343	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	1q41	LOC643723	rs12037343-T	0.0609	3E-6		2.2172	[NR] unit increase	Illumina [1216189] (imputed)	N
2255	chr1	218951185	218951186	rs10495106	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	1q41	TGFB2	rs10495106-T	0.94	6E-6		0.096	[0.055-0.137] unit increase	Illumina [2385183] (imputed)	N
2255	chr1	218963141	218963142	rs2378017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs2378017-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2255	chr1	218968793	218968794	rs7547760	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q41		rs7547760-G	0.49	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
2255	chr1	218968793	218968794	rs7547760	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q41	NR	rs7547760-G	0.4982	5E-14				NR [9056863] (imputed)	N
2255	chr1	218969907	218969908	rs9431487	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	1q41	NR	rs9431487-?	NR	1E-6	(genus_Bifidobacterium)	0.7583545	[0.48-1.03] unit increase	Affymetrix [210924]	N
2255	chr1	218975474	218975475	rs12411277	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q41	TGFB2	rs12411277-A	0.368	2E-13		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2255	chr1	218988753	218988754	rs17514738	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	MIR548F3	rs17514738-T	0.603286	7E-18		0.0162569	[0.013-0.02] unit increase	NR [13737936] (imputed)	N
2255	chr1	218988753	218988754	rs17514738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs17514738-?	NR	1E-21				NR [~ 8900000] (imputed)	N
2255	chr1	218988753	218988754	rs17514738	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs17514738-?	NR	7E-24		0.02134	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
2255	chr1	218988753	218988754	rs17514738	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	MIR548F3	rs17514738-T	0.603941	4E-7	(men)	0.0269879	[0.017-0.037] unit increase	NR [17166351] (imputed)	N
2255	chr1	218988753	218988754	rs17514738	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	MIR548F3	rs17514738-T	0.601678	2E-11		0.0234013	[0.017-0.03] unit increase	NR [17166351] (imputed)	N
2255	chr1	218995272	218995273	rs7552186	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	1q41	LYPLAL1	rs7552186-C	0.62	3E-8		1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2255	chr1	219009834	219009835	rs2647116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs2647116-?	NR	3E-35				NR [~ 8900000] (imputed)	N
2256	chr1	219034823	219034824	rs78763889	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	intergenic	rs78763889-T	0.0417	1E-12		0.0332	[0.024-0.042] unit increase	Affymetrix [18391927] (imputed)	N
2256	chr1	219039239	219039240	rs664574	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q41		rs664574-C	0.43	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
2256	chr1	219039239	219039240	rs664574	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q41	NR	rs664574-C	0.4487	2E-13				NR [9056863] (imputed)	N
2256	chr1	219047868	219047869	rs11118171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-412H9.1	rs11118171-T	NR	4E-8		0.0176432	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2256	chr1	219048375	219048376	rs17048758	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	1q41	TGFB2	rs17048758-?	NR	2E-6				Affymetrix [753382]	N
2256	chr1	219073534	219073535	rs558761674	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	1q41	LINC01710	rs558761674-T	9.0E-4	4E-8		0.193421	[0.12-0.26] unit decrease	Affymetrix [up to 29454346] (imputed)	N
2256	chr1	219095381	219095382	rs12732806	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q41	NR	rs12732806-C	0.257233	1E-8		0.0456298	[0.03-0.061] unit decrease	Affymetrix [17914406] (imputed)	N
2256	chr1	219110118	219110119	rs628839	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	1q41	TGFB2, LYPLAL1	rs628839-G	NR	3E-6		0.128991	[0.075-0.183] unit decrease	Illumina [at least 950000] (imputed)	N
2256	chr1	219111027	219111028	rs73103335	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	1q41	LYPLAL1-AS1	rs73103335-A	0.933	3E-15		0.206	[0.16-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2256	chr1	219122392	219122393	rs618205	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q41	NR	rs618205-T	0.0671934	5E-11		0.0401481	[0.028-0.052] unit decrease	NR [19129689] (imputed)	N
2256	chr1	219140292	219140293	rs115282653	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	LYPLAL1	rs115282653-C	0.969265	2E-8	(-294 ms)	0.0916001	[0.06-0.123] unit decrease	Affymetrix [10000000] (imputed)	N
2256	chr1	219140292	219140293	rs115282653	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q41	LYPLAL1	rs115282653-C	0.969265	2E-8	(-292 ms)	0.0909557	[0.059-0.123] unit decrease	Affymetrix [10000000] (imputed)	N
2256	chr1	219147418	219147419	rs596169	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	1q41	MIR548F3	rs596169-?	NR	4E-12		0.18	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
2257	chr1	219182857	219182858	rs1700874	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	MIR548F3	rs1700874-A	0.9314	3E-26		0.2813	[0.23-0.34] unit increase	Affymetrix [~ 11900000] (imputed)	N
2257	chr1	219199379	219199380	rs1256580	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q41	NR	rs1256580-C	0.1517	1E-27		1.19	[1.15-1.23]	Affymetrix, Illumina [7072771] (imputed)	N
2257	chr1	219199379	219199380	rs1256580	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	1q41	TGFB2	rs1256580-C	0.15	1E-11		1.21	[1.15-1.28]	Illumina [up to 7441713] (imputed)	N
2257	chr1	219209500	219209501	rs141975840	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Veillonellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	1q41		rs141975840-C	0.0115126	2E-8		0.370807	[0.24-0.5] unit increase	Illumina [7980478] (imputed)	N
2257	chr1	219209500	219209501	rs141975840	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Veillonella rogosae abundance in stool	5,959 Finnish ancestry individuals	NA	1q41		rs141975840-C	0.0115126	1E-8		0.38388	[0.25-0.52] unit increase	Illumina [7980478] (imputed)	N
2257	chr1	219209500	219209501	rs141975840	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Veillonella abundance in stool	5,959 Finnish ancestry individuals	NA	1q41		rs141975840-C	0.0115126	5E-9		0.434159	[0.29-0.58] unit increase	Illumina [7980478] (imputed)	N
2257	chr1	219215136	219215137	rs6667536	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	1q41	LYPLAL1-DT	rs6667536-A	NR	2E-17		0.125	unit decrease	Illumina [15409056] (imputed)	N
2257	chr1	219222849	219222850	rs73111535	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	1q41	NR	rs73111535-C		2E-9		0.17	[0.11-0.23] unit increase	NR [NR]	N
2257	chr1	219222849	219222850	rs73111535	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	1q41	LOC643723	rs73111535-C	0.93	1E-12				Affymetrix, Illumina [8002429] (imputed)	N
2257	chr1	219222849	219222850	rs73111535	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	1q41	LOC643723	rs73111535-C	0.93	8E-6		1.17	NR	Affymetrix [at least 8002429] (imputed)	N
2257	chr1	219222849	219222850	rs73111535	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	1q41	LYPLAL1-AS1	rs73111535-?	NR	2E-12		0.1845	[0.13-0.24] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
2257	chr1	219222849	219222850	rs73111535	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	MIR548F3	rs73111535-C	0.9326	2E-27		0.2902	[0.24-0.35] unit increase	Affymetrix [~ 11900000] (imputed)	N
2257	chr1	219247210	219247211	rs12041410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q41		rs12041410-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2257	chr1	219248659	219248660	rs17049035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs17049035-A	NR	2E-8		0.0247002	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
2257	chr1	219248659	219248660	rs17049035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs17049035-A	NR	9E-9		0.0250841	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
2257	chr1	219248659	219248660	rs17049035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs17049035-A	NR	2E-9		0.0270364	[0.018-0.036] unit decrease	Affymetrix [321788] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs61823192-T	NR	4E-17		0.0729774	[0.056-0.09] unit increase	Affymetrix [319769] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs61823192-T	NR	1E-17		0.0744556	[0.057-0.091] unit increase	Affymetrix [319769] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs61823192-T	NR	1E-19		0.0816963	[0.064-0.099] unit decrease	Affymetrix [321788] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.4	rs61823192-T	NR	6E-12		0.059592	[0.043-0.077] unit decrease	Affymetrix [321016] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q41	MIR548F3	rs61823192-C	0.970673	4E-12		0.00826912	[0.0059-0.0106] unit decrease	Affymetrix [13995440] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q41		rs61823192-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs61823192-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2258	chr1	219294569	219294570	rs61823192	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q41	LYPLAL1	rs61823192-T	0.0301509553250379	1E-13		0.012297	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
2258	chr1	219310460	219310461	rs12135454	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	1q41	LYPLAL1-AS1	rs12135454-T	0.0095	2E-8		0.0518954	[0.034-0.07] unit decrease	Illumina [up to 29454346] (imputed)	N
2258	chr1	219333719	219333720	rs141656455	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q41	LYPLAL1	rs141656455-C	0.0109557945056865	8E-6	(F_Sutterellaceae_HB)	1.58306	[0.89-2.28] unit decrease	Illumina [7711310] (imputed)	N
2258	chr1	219375546	219375547	rs10746384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q41		rs10746384-G	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2258	chr1	219392229	219392230	rs77278027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs77278027-T	NR	6E-11		0.0385939	[0.027-0.05] unit decrease	Affymetrix [319769] (imputed)	N
2258	chr1	219392229	219392230	rs77278027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs77278027-T	NR	5E-11		0.0387475	[0.027-0.05] unit decrease	Affymetrix [319769] (imputed)	N
2258	chr1	219392229	219392230	rs77278027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs77278027-T	NR	2E-10		0.0391654	[0.027-0.051] unit increase	Affymetrix [321788] (imputed)	N
2258	chr1	219392229	219392230	rs77278027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs77278027-T	NR	2E-9		0.0353914	[0.024-0.047] unit increase	Affymetrix [321016] (imputed)	N
2259	chr1	219416690	219416691	rs764553160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs764553160-C	NR	5E-21		0.0283467	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
2259	chr1	219416690	219416691	rs764553160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs764553160-C	NR	3E-21		0.028529	[0.023-0.034] unit increase	Affymetrix [319769] (imputed)	N
2259	chr1	219416690	219416691	rs764553160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs764553160-C	NR	4E-11		0.0201127	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
2259	chr1	219416690	219416691	rs764553160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs764553160-C	NR	4E-9		0.0179065	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
2259	chr1	219416690	219416691	rs764553160	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	intergenic	rs764553160-CA	0.6822	4E-16		0.0164	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
2259	chr1	219429443	219429444	rs28454900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs28454900-T	NR	5E-15		0.0244686	[0.018-0.031] unit decrease	Affymetrix [321788] (imputed)	N
2259	chr1	219435342	219435343	rs12753535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs12753535-A	NR	2E-9		0.0219153	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
2259	chr1	219452486	219452487	rs57962177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs57962177-A	NR	1E-17		0.0284873	[0.022-0.035] unit decrease	Affymetrix [319769] (imputed)	N
2259	chr1	219452486	219452487	rs57962177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs57962177-A	NR	1E-17		0.0285388	[0.022-0.035] unit decrease	Affymetrix [319769] (imputed)	N
2259	chr1	219452486	219452487	rs57962177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs57962177-A	NR	6E-10		0.0208346	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
2259	chr1	219452486	219452487	rs57962177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs57962177-A	NR	4E-9		0.01979	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
2259	chr1	219452486	219452487	rs57962177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs57962177-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2259	chr1	219474528	219474529	rs11285171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q41		rs11285171-T	NR	2E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2259	chr1	219474600	219474601	rs12135929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-135J2.3	rs12135929-G	NR	4E-19		0.0308363	[0.024-0.038] unit increase	Affymetrix [321788] (imputed)	N
2259	chr1	219483217	219483218	rs75128958	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	LYPLAL1	rs75128958-A	0.0774	2E-23		0.0445	[0.036-0.053] unit decrease	Affymetrix [19819130] (imputed)	N
2259	chr1	219483217	219483218	rs75128958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs75128958-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2259	chr1	219500753	219500754	rs79274749	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1q41	LYPLAL1	rs79274749-T	0.08	6E-6	(conditional on rs11118406)	1.09	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
2259	chr1	219504139	219504140	rs17525033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs17525033-?	NR	2E-27				NR [~ 8900000] (imputed)	N
2259	chr1	219511962	219511963	rs6668147	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q41	LYPLAL1	rs6668147-C	0.196709117004674	1E-6	(F_Sutterellaceae_HB)	0.528417	[0.31-0.74] unit decrease	Illumina [7711310] (imputed)	N
2259	chr1	219522661	219522662	rs13376300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs13376300-A	NR	4E-12		0.0227342	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
2259	chr1	219533816	219533817	rs10779349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs10779349-C	NR	2E-8		0.0159768	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
2259	chr1	219534484	219534485	rs12128471	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	1q41	RP11-392O17.1	rs12128471-A	0.0091	3E-9		0.0566545	[0.038-0.075] unit decrease	Illumina [up to 29454346] (imputed)	N
2259	chr1	219540175	219540176	rs4846551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846551-T	NR	1E-20		0.0277507	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
2259	chr1	219540175	219540176	rs4846551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846551-T	NR	2E-20		0.0275883	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
2259	chr1	219540175	219540176	rs4846551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846551-T	NR	2E-9		0.0179997	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219550981	219550982	rs4846553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846553-A	NR	3E-13		0.0205776	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219550981	219550982	rs4846553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846553-A	NR	5E-13		0.0203748	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219550981	219550982	rs4846553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846553-A	NR	4E-10		0.0183406	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219551752	219551753	rs58336067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs58336067-G	NR	3E-12		0.0197094	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219560817	219560818	rs6691931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs6691931-G	NR	2E-19		0.0324016	[0.025-0.039] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219560817	219560818	rs6691931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs6691931-G	NR	1E-19		0.0325725	[0.026-0.04] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219566536	219566537	rs1417070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs1417070-T	NR	2E-14		0.0239491	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219572347	219572348	rs2791554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2791554-T	NR	3E-10		0.0229406	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219573199	219573200	rs2820429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2820429-G	NR	7E-16		0.0253417	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219573199	219573200	rs2820429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2820429-G	NR	5E-16		0.0255017	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219573314	219573315	rs2791555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2791555-T	NR	2E-8		0.0178361	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219573396	219573397	rs12128945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs12128945-C	NR	2E-14		0.0246273	[0.018-0.031] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219573396	219573397	rs12128945	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs12128945-?	NR	4E-27				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219573841	219573841	rs796959510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs796959510-C	NR	4E-17		0.0237896	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219573841	219573841	rs796959510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs796959510-C	NR	3E-17		0.0239104	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219573841	219573841	rs796959510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs796959510-C	NR	4E-10		0.0179164	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219573841	219573841	rs796959510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs796959510-C	NR	2E-12		0.0206921	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219574556	219574557	rs2605090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2605090-A	NR	4E-18		0.024365	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219574556	219574557	rs2605090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2605090-A	NR	8E-18		0.0241651	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219574556	219574557	rs2605090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2605090-A	NR	5E-11		0.019181	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219574556	219574557	rs2605090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2605090-A	NR	1E-11		0.0189533	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219574556	219574557	rs2605090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2605090-A	NR	2E-8		0.0159645	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219578879	219578880	rs2791556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2791556-C	NR	1E-12		0.0232425	[0.017-0.03] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219580734	219580735	rs4846296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846296-G	NR	6E-29		0.0359206	[0.03-0.042] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219580734	219580735	rs4846296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846296-G	NR	2E-28		0.0356153	[0.029-0.042] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219580734	219580735	rs4846296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4846296-G	NR	3E-13		0.023773	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219582644	219582645	rs2605088	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs2605088-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219584163	219584164	rs553014999	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q41	LYPLAL1	rs553014999-C	0.0013	8E-6		1.9	[1.43-2.51]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2260	chr1	219584930	219584931	rs2265978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs2265978-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219585392	219585393	rs4240924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs4240924-A	NR	9E-14		0.0242735	[0.018-0.031] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219587383	219587384	rs61838772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs61838772-T	NR	9E-10		0.0378614	[0.026-0.05] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219587383	219587384	rs61838772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs61838772-T	NR	8E-10		0.0380063	[0.026-0.05] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219587383	219587384	rs61838772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs61838772-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219588236	219588237	rs2124328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2124328-C	NR	3E-12		0.0227004	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219588802	219588803	rs2791559	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	LOC102723886	rs2791559-A	0.558588	2E-9		0.0112309	[0.0075-0.0149] unit decrease	NR [13737936] (imputed)	N
2260	chr1	219589064	219589065	rs2791560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs2791560-T	NR	5E-17		0.0315784	[0.024-0.039] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219590469	219590470	rs1340102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs1340102-?	NR	5E-12				NR [~ 8900000] (imputed)	N
2260	chr1	219590765	219590766	rs12725301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs12725301-T	NR	5E-12		0.0239301	[0.017-0.031] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219590765	219590766	rs12725301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q41	NR	rs12725301-T	NR	9E-13		0.0208	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2260	chr1	219594329	219594330	rs1340103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs1340103-T	NR	2E-19		0.0257772	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219594329	219594330	rs1340103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-392O17.1	rs1340103-T	NR	5E-20		0.0262032	[0.021-0.032] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	1q41		rs758681528-G	0.838564	4E-8		0.0300214	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1q41		rs758681528-G	0.838564	3E-8		0.0303295	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q41		rs758681528-G	0.838564	7E-9		0.0313488	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q41		rs758681528-G	0.838564	4E-8		0.030092	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs758681528-GA	NR	4E-36		0.0482421	[0.041-0.056] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs758681528-GA	NR	3E-36		0.0483596	[0.041-0.056] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs758681528-GA	NR	8E-29		0.0444705	[0.037-0.052] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs758681528-GA	NR	4E-14		0.0289934	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
2260	chr1	219608231	219608231	rs758681528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs758681528-GA	NR	1E-13		0.0288473	[0.021-0.036] unit increase	Affymetrix [321169] (imputed)	N
2260	chr1	219612184	219612185	rs74139185	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs74139185-G	0.01568	4E-9	(FERMT2)	0.08094	NR unit increase	Illumina [1671387] (imputed)	N
2260	chr1	219612714	219612715	rs7524924	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7524924-A	0.543066	1E-14		0.0659034	[0.048-0.084] decrease	Affymetrix [11014269] (imputed)	N
2260	chr1	219613774	219613775	rs61838774	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	1q41	RP11-95P13.1	rs61838774-A	0.7143	1E-6		0.0623	[0.037-0.088] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2260	chr1	219617035	219617036	rs11118303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118303-G	NR	4E-46		0.0402277	[0.035-0.046] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219617035	219617036	rs11118303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118303-G	NR	5E-45		0.0397248	[0.034-0.045] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219617035	219617036	rs11118303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118303-G	NR	3E-29		0.0329285	[0.027-0.039] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219617035	219617036	rs11118303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118303-G	NR	1E-22		0.027536	[0.022-0.033] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219618034	219618035	rs12747505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q41		rs12747505-A	0.838107	1E-9		0.0322604	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618034	219618035	rs12747505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q41		rs12747505-A	0.838107	2E-9		0.0322522	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	2E-8		0.0297081	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	2E-8		0.0302961	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1q41		rs61838776-C	0.838902	2E-9		0.0312109	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	3E-8		0.0299416	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	5E-8		0.0297583	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	2E-8		0.0304475	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	5E-9		0.0318171	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
2260	chr1	219618563	219618564	rs61838776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q41		rs61838776-C	0.838891	3E-9		0.0318423	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	1E-40		0.0406084	[0.035-0.047] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	1E-40		0.0405637	[0.035-0.047] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	5E-21		0.0288966	[0.023-0.035] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	1E-27		0.0344127	[0.028-0.041] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	6E-14		0.0227561	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605082-G	NR	2E-17		0.0262289	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs2605082-?	NR	1E-30				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219619537	219619538	rs2605082	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs2605082-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	8E-32		0.0343875	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	5E-32		0.0344985	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	1E-9		0.0179361	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	2E-37		0.038906	[0.033-0.045] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs12724708-T	NR	3E-10		0.0209791	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	3E-24		0.02966	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12724708-T	NR	3E-8		0.016467	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	LYPLAL1-AS1	rs12724708-A	0.6426	2E-35		0.0243	[0.02-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
2260	chr1	219620568	219620569	rs12724708	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs12724708-?	NR	1E-26				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219622071	219622072	rs11118304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118304-A	NR	4E-42		0.038337	[0.033-0.044] unit decrease	Affymetrix [321016] (imputed)	N
2260	chr1	219622071	219622072	rs11118304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q41		rs11118304-A	0.448581	7E-11		0.014522474	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2260	chr1	219623229	219623230	rs12740837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12740837-A	NR	2E-12		0.0796778	[0.058-0.102] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219623229	219623230	rs12740837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12740837-A	NR	1E-12		0.0804464	[0.058-0.103] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219623229	219623230	rs12740837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12740837-A	NR	8E-11		0.0762414	[0.053-0.099] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219623229	219623230	rs12740837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs12740837-A	NR	2E-12		0.0794382	[0.057-0.101] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219623229	219623230	rs12740837	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs12740837-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219623450	219623451	rs4846561	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q41	NR	rs4846561-T	0.612812	7E-20		0.0602543	[0.047-0.074] unit increase	Affymetrix [17914406] (imputed)	N
2260	chr1	219623620	219623621	rs1538748	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1q41	RP11-95P13.1	rs1538748-T	0.6302	2E-7		0.0439	[0.027-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2260	chr1	219625807	219625808	rs6541226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6541226-T	NR	3E-11		0.0279581	[0.02-0.036] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219628035	219628036	rs12037905	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q41	SLC30A10	rs12037905-C	0.580639	1E-8		0.00792729	[0.0052-0.0106] unit increase	Affymetrix [12370749]	N
2260	chr1	219628681	219628682	rs6689335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	1q41		rs6689335-T	0.581893	3E-8		0.0216455	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219628681	219628682	rs6689335	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	1q41	LYPLAL1	rs6689335-?	NR	3E-12				NR [5554549] (imputed)	N
2260	chr1	219628681	219628682	rs6689335	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	1q41	LYPLAL1	rs6689335-?	NR	5E-8				NR [5554549] (imputed)	N
2260	chr1	219628681	219628682	rs6689335	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio adjusted for BMI	7,618 European ancestry women, 7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	1q41	LYPLAL1	rs6689335-T	0.59	3E-8		5.53	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2260	chr1	219628681	219628682	rs6689335	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio	7,618 European ancestry women,  7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	1q41	LYPLAL1	rs6689335-T	0.59	2E-8		5.59	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2260	chr1	219628972	219628973	rs6674544	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	1q41	LYPLAL1	rs6674544-A	0.57	7E-21		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
2260	chr1	219631022	219631023	rs71640847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q41		rs71640847-C	NR	9E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2260	chr1	219631062	219631063	rs377711944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q41		rs377711944-T	NR	2E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1q41		rs12130231-A	0.41	2E-21		0.019	mmol/L decrease	NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	1q41		rs12130231-A	0.41	3E-14		0.014	nmol/L increase	NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q41		rs12130231-A	0.41	8E-86				NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1q41		rs12130231-A	0.41	1E-17		0.015	mmol/L increase	NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q41		rs12130231-A	0.41	4E-41		0.02	% increase	NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	1q41		rs12130231-A	0.41	8E-10		0.012	U/L decrease	NR [NR] (imputed)	N
2260	chr1	219631303	219631304	rs12130231	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	1q41		rs12130231-A	0.41	4E-14		0.015	U/L decrease	NR [NR] (imputed)	N
2260	chr1	219631743	219631744	rs6684734	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	1q41	NR	rs6684734-G	0.3993	5E-10		1.08	[1.05-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
2260	chr1	219632652	219632653	rs73084044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs73084044-T	NR	1E-8		0.0252183	[0.017-0.034] unit decrease	Affymetrix [323123] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	5E-42		0.046357	[0.04-0.053] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	9E-41		0.0456343	[0.039-0.052] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	2E-13		0.0253208	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	9E-39		0.0461919	[0.039-0.053] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs2820439-A	NR	6E-11		0.0255842	[0.018-0.033] unit increase	Affymetrix [323858] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	2E-28		0.0376535	[0.031-0.044] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs2820439-A	NR	1E-9		0.0226608	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
2260	chr1	219633310	219633311	rs2820439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2820439-A	NR	4E-13		0.0251234	[0.018-0.032] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219636540	219636541	rs12027371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q41		rs12027371-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q41		rs11118310-T	NR	9E-21		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs11118310-A	NR	2E-75		0.0524122	[0.047-0.058] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q41	NR	rs11118310-T	0.59336	5E-10		0.014123842	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q41	NR	rs11118310-T	0.593367	4E-13		0.016427191	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q41		rs11118310-T	0.593488	1E-13		0.016819667	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2260	chr1	219637670	219637671	rs11118310	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q41	SLC30A10	rs11118310-A	0.406524	2E-21		0.0192039	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	1q41	LYPLAL1	rs2820436-C	0.659159	1E-6		0.018509	[0.011-0.026] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	1q41	LYPLAL1	rs2820436-C	0.659159	4E-9		0.015629	[0.01-0.021] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	1q41	SLC30A10, LYPLAL1	rs2820436-C	0.66	1E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	1q41	NR	rs2820436-?	0.34	9E-9		1.0741946	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	1q41	NR	rs2820436-A	0.342645	2E-8		1.0842459	[1.05-1.12]	Affymetrix [16396089] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip (hospital diagnosed)	2,396 European ancestry cases, 9,593 European ancestry controls	5,714 Icelandic ancestry cases, 199,421 Icelandic ancestry controls	1q41	NR	rs2820436-A	0.342814	6E-6		1.0951703	[1.05-1.14]	Affymetrix [16122076] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	1q41	NR	rs2820436-A	0.342569	2E-9		1.0704347	[1.05-1.09]	Affymetrix [16468597] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	1q41	LYPLAL1, ZC3H11B	rs2820436-A	0.3876	4E-8		0.0049	[0.0031-0.0067] unit increase	Illumina [at least 200000]	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6804	6E-29	(women)	0.0568	[0.047-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6804	3E-27	(EA, women)	0.0587	[0.048-0.069] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6817	5E-7	(women)	0.0574	[0.035-0.08] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6817	5E-7	(women)	0.0574	[0.035-0.080] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6803	2E-21	(women)	0.0591	[0.047-0.071] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	LYPLAL1	rs2820436-C	0.6803	2E-21	(women)	0.0591	[0.047-0.071] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640679	219640680	rs2820436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs2820436-?	0.6804	6E-26	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219640745	219640746	rs115328987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs115328987-A	NR	5E-9		0.0275852	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219640745	219640746	rs115328987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs115328987-A	NR	6E-9		0.0273744	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219640745	219640746	rs115328987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs115328987-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219641340	219641341	rs112893723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs112893723-T	NR	2E-8		0.0503454	[0.033-0.068] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219641340	219641341	rs112893723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs112893723-T	NR	1E-8		0.0491705	[0.032-0.066] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219642108	219642109	rs2605097	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	1q41	intergenic	rs2605097-?	0.3002	4E-9		1.03	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
2260	chr1	219642108	219642109	rs2605097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q41		rs2605097-A	0.680661	5E-9		0.013795901	[0.0092-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
2260	chr1	219642108	219642109	rs2605097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q41	NR	rs2605097-A	0.684366	5E-11		0.013008	[0.0091-0.0169] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2260	chr1	219642187	219642187	rs5781117	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	1q41	LYPLAL1, SLC30A10	rs5781117-?	NR	2E-10		0.028	[0.020-0.037] unit increase	Illumina [12039491] (imputed)	N
2260	chr1	219643648	219643649	rs2605098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605098-A	NR	2E-85		0.0580463	[0.052-0.064] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219643648	219643649	rs2605098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605098-A	NR	5E-84		0.0575554	[0.052-0.063] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219643648	219643649	rs2605098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2605098-A	NR	4E-85		0.0601883	[0.054-0.066] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219643648	219643649	rs2605098	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	1q41	LYPLAL1	rs2605098-?	NR	1E-20				NR [5554549] (imputed)	N
2260	chr1	219643648	219643649	rs2605098	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	1q41	LYPLAL1	rs2605098-?	NR	4E-38				NR [5554549] (imputed)	N
2260	chr1	219644223	219644224	rs2605100	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	1q41		rs2605100-A	0.3197	4E-15		1.0737959	[1.054813873-1.09311965]	Affymetrix, Illumina [NR] (imputed)	N
2260	chr1	219644223	219644224	rs2605100	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q41		rs2605100-A	0.3084	1E-12		0.12244507	[0.089-0.156] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
2260	chr1	219644223	219644224	rs2605100	19557161	Lindgren CM	2009-06-26	PLoS Genet	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	1q41	LYPLAL1	rs2605100-G	0.692	3E-8	(WHR in women)	0.04	[0.03-0.05] z-score unit increase	Affymetrix, Illumina [2573738] (imputed)	N
2260	chr1	219644495	219644496	rs2605101	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q41	NR	rs2605101-A	0.676330377743423	8E-27				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219644495	219644496	rs2605101	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q41	NR	rs2605101-A	0.676330377743423	6E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219644495	219644496	rs2605101	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q41	NR	rs2605101-A	0.676330377743423	1E-21		0.03778358	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219646186	219646187	rs75781413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs75781413-A	NR	4E-12		0.030894	[0.022-0.04] unit decrease	Affymetrix [321016] (imputed)	N
2260	chr1	219646806	219646807	rs6541229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6541229-C	NR	3E-71		0.050177	[0.045-0.056] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219646806	219646807	rs6541229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6541229-C	NR	3E-70		0.0498459	[0.044-0.055] unit increase	Affymetrix [319769] (imputed)	N
2260	chr1	219646806	219646807	rs6541229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6541229-C	NR	8E-26		0.0298188	[0.024-0.035] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219646806	219646807	rs6541229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6541229-C	NR	2E-26		0.0303178	[0.025-0.036] unit increase	Affymetrix [321169] (imputed)	N
2260	chr1	219646806	219646807	rs6541229	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	1q41	NR	rs6541229-?	NR	4E-6				NR [1800000]	N
2260	chr1	219647938	219647939	rs6669360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs6669360-T	NR	5E-53		0.0447664	[0.039-0.05] unit decrease	Affymetrix [321788] (imputed)	N
2260	chr1	219647938	219647939	rs6669360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs6669360-T	NR	7E-10		0.0197372	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
2260	chr1	219650949	219650950	rs748273	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q41	RP11-95P13.1	rs748273-A	0.2864	3E-8		0.0545	[0.035-0.074] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2260	chr1	219651132	219651133	rs12022722	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q41	LYPLAL1	rs12022722-T	0.47	2E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs1563352-T	0.6972	6E-19	(EA)	0.0437	[0.034-0.053] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs1563352-T	0.6972	4E-18		0.0404	[0.031-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	LYPLAL1	rs1563352-T	0.6972	1E-16	(EA)	0.046	[0.035-0.057] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	LYPLAL1	rs1563352-T	0.6972	1E-16		0.046	[0.035-0.057] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs1563352-?	0.6972	2E-18	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219652794	219652795	rs1563352	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs1563352-?	0.6972	2E-18				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2260	chr1	219653025	219653026	rs1563353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs1563353-A	NR	1E-19		0.0314382	[0.025-0.038] unit increase	Affymetrix [323858] (imputed)	N
2260	chr1	219653100	219653101	rs1563355	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q41	NA	rs1563355-T	0.328	2E-49		0.0277	[0.024-0.031] unit decrease	NR [~ 27400000] (imputed)	N
2260	chr1	219653291	219653292	rs77739064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs77739064-C	NR	2E-10		0.039725	[0.028-0.052] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219653291	219653292	rs77739064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs77739064-C	NR	7E-11		0.0405451	[0.028-0.053] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219653291	219653292	rs77739064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs77739064-C	NR	1E-16		0.0534736	[0.041-0.066] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219653291	219653292	rs77739064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs77739064-C	NR	5E-15		0.048647	[0.036-0.061] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219654391	219654392	rs2605110	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs2605110-?	NR	3E-81				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219654391	219654392	rs2605110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q41		rs2605110-?	NR	1E-67				NR [~ 8900000] (imputed)	N
2260	chr1	219655368	219655369	rs2791550	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	1q41	NR	rs2791550-G	0.67	4E-88		0.037	[0.033-0.041] unit increase	Affymetrix [2446094] (imputed)	N
2260	chr1	219655368	219655369	rs2791550	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	1q41	NR	rs2791550-G	0.67	5E-8				Affymetrix [2446094] (imputed)	N
2260	chr1	219655368	219655369	rs2791550	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q41	NR	rs2791550-T	0.2478	3E-93		0.037	[0.033-0.041] unit decrease	NR [~ 27400000] (imputed)	N
2260	chr1	219655368	219655369	rs2791550	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	1q41	NR	rs2791550-T	0.2488	2E-49		0.0265	[0.023-0.03] unit decrease	NR [~ 27400000] (imputed)	N
2260	chr1	219655837	219655838	rs1531093	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	1q41	LOC102723886	rs1531093-C	NR	8E-8		0.912926	[0.88-0.95]	Illumina [NR] (imputed)	N
2260	chr1	219655837	219655838	rs1531093	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	1q41	LOC102723886	rs1531093-C	NR	1E-8		0.910192	[0.88-0.94]	Illumina [NR] (imputed)	N
2260	chr1	219655875	219655876	rs1531094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs1531094-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
2260	chr1	219657162	219657163	rs11118316	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q41	LYPLAL1	rs11118316-A	0.44	3E-9	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
2260	chr1	219658757	219658757	rs113400825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs113400825-T	NR	4E-22		0.0292376	[0.023-0.035] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219658757	219658757	rs113400825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs113400825-T	NR	3E-24		0.0308062	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219659667	219659668	rs2791547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2791547-A	NR	3E-10		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2260	chr1	219659667	219659668	rs2791547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2791547-A	0.387	3E-10	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2260	chr1	219659667	219659668	rs2791547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2791547-A	NR	7E-7		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
2260	chr1	219659667	219659668	rs2791547	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2791547-A	0.387	3E-6	(EA)	0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
2260	chr1	219660534	219660535	rs2820426	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1q41	LOC102723886, LYPLAL1	rs2820426-A	0.389942484385998	1E-12		0.0521	[0.038-0.066] unit decrease	NR [5035015] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	1E-29		0.0509363	[0.042-0.06] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	5E-29		0.050394	[0.042-0.059] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	5E-11		0.0299036	[0.021-0.039] unit decrease	Affymetrix [321114] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	4E-27		0.0504884	[0.041-0.06] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs2791545-T	NR	2E-10		0.0328602	[0.023-0.043] unit increase	Affymetrix [323858] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	3E-18		0.039257	[0.03-0.048] unit increase	Affymetrix [321016] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs2791545-T	NR	3E-8		0.0271424	[0.018-0.037] unit increase	Affymetrix [323123] (imputed)	N
2260	chr1	219662034	219662035	rs2791545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs2791545-T	NR	7E-10		0.028106	[0.019-0.037] unit decrease	Affymetrix [321169] (imputed)	N
2260	chr1	219662536	219662537	rs71640850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1q41		rs71640850-T	0.839629	1E-8		0.0311749	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219662536	219662537	rs71640850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	1q41		rs71640850-T	0.839629	2E-8		0.0305947	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219662536	219662537	rs71640850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q41		rs71640850-T	0.839629	2E-8		0.0307784	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219662536	219662537	rs71640850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	1q41		rs71640850-T	0.839629	3E-8		0.0304738	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
2260	chr1	219662536	219662537	rs71640850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs71640850-A	NR	5E-19		0.034725	[0.027-0.042] unit increase	Affymetrix [321114] (imputed)	N
2260	chr1	219664029	219664030	rs2066152	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	intergenic	rs2066152-A	0.4025	9E-14		0.0205	[0.015-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2260	chr1	219668251	219668252	rs1538742	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q41	LYPLAL1, SLC30A10	rs1538742-A	0.57	1E-11		6.8	z-score increase	Affymetrix [4312306] (imputed)	N
2260	chr1	219668834	219668834	rs35662751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.1	rs35662751-A	NR	3E-18		0.0272081	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
2260	chr1	219669225	219669226	rs765751	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q41	LYPLA1	rs765751-C	0.62	3E-22		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219669225	219669226	rs765751	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLA1	rs765751-C	0.611	8E-22				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219669225	219669226	rs765751	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLA1	rs765751-C	0.611	9E-31		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2260	chr1	219670147	219670148	rs718700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs718700-C	NR	5E-72		0.0515386	[0.046-0.057] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219670147	219670148	rs718700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs718700-C	NR	1E-70		0.05109	[0.045-0.057] unit decrease	Affymetrix [319769] (imputed)	N
2260	chr1	219670147	219670148	rs718700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.1	rs718700-C	NR	1E-68		0.0522753	[0.046-0.058] unit increase	Affymetrix [321788] (imputed)	N
2260	chr1	219672375	219672376	rs11118320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q41		rs11118320-G	NR	6E-13		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2260	chr1	219672375	219672376	rs11118320	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q41	SLC30A10	rs11118320-C	0.436231	1E-14		0.0147871	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
2260	chr1	219673704	219673705	rs2820468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs2820468-A	NR	1E-12		0.0228502	[0.017-0.029] unit increase	Affymetrix [323123] (imputed)	N
2260	chr1	219673704	219673705	rs2820468	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	1q41	LYPLAL1	rs2820468-?	NR	4E-11				NR [5554549] (imputed)	N
2260	chr1	219673704	219673705	rs2820468	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage	341,632 European ancestry individuals	NA	1q41	LYPLAL1	rs2820468-?	NR	3E-21				NR [5554549] (imputed)	N
2260	chr1	219673827	219673828	rs1417066	22763110	Zeggini E	2012-07-03	Lancet	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	1q41	NR	rs1417066-G	NR	1E-6		1.07	[1.04-1.10]	Illumina [485491]	N
2260	chr1	219676041	219676042	rs2791553	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	1q41	LYPLAL1	rs2791553-G	0.60	5E-7		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2261	chr1	219679966	219679967	rs12044156	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q41	SLC30A10	rs12044156-G	0.436165	2E-9		0.0118923	[0.008-0.0158] unit increase	Affymetrix [NR] (imputed)	N
2261	chr1	219682178	219682178	rs34340969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q41		rs34340969-GA	NR	1E-15		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2261	chr1	219685465	219685466	rs11118325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118325-T	NR	1E-11		0.0209938	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219685465	219685466	rs11118325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118325-T	NR	4E-11		0.0204461	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219685465	219685466	rs11118325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118325-T	NR	7E-13		0.0231087	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219685465	219685466	rs11118325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118325-T	NR	8E-18		0.0265917	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219687431	219687432	rs2785990	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	1q41		rs2785990-T	0.32930000000000004	5E-7		0.0547	[0.033-0.076] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
2261	chr1	219687431	219687432	rs2785990	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	1q41		rs2785990-T	0.32299999999999995	3E-10		0.0459	[0.032-0.06] unit increase	Affymetrix, Illumina [28462191] (imputed)	N
2261	chr1	219687431	219687432	rs2785990	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	1q41	LYPLAL1	rs2785990-T	NR	5E-18		0.01780659	[0.014-0.022] unit increase	Illumina [242289]	N
2261	chr1	219687431	219687432	rs2785990	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	1q41	NR	rs2785990-T	0.67	3E-8		0.018	unit increase	Illumina [242289]	N
2261	chr1	219687431	219687432	rs2785990	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	1q41	NR	rs2785990-T	0.67	3E-7		0.016	unit decrease	Illumina [242289]	N
2261	chr1	219687492	219687493	rs72732565	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs72732565-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219688633	219688634	rs2494195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1q41		rs2494195-C	NR	4E-8		0.0437	[0.028-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2261	chr1	219688633	219688634	rs2494195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2494195-T	NR	1E-19		0.0262039	[0.021-0.032] unit decrease	Affymetrix [321114] (imputed)	N
2261	chr1	219688633	219688634	rs2494195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs2494195-T	NR	2E-17		0.0276303	[0.021-0.034] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219688633	219688634	rs2494195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2494195-T	NR	5E-22		0.027922	[0.022-0.034] unit decrease	Affymetrix [321169] (imputed)	N
2261	chr1	219693219	219693220	rs2820464	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry high waist-to-hip ratio individuals, 5,481 European ancestry low waist-to-hip ratio individuals	3,351 European ancestry high waist-to-hip ratio individuals, 3,352 European ancestry low waist-to-hip ratio individuals	1q41	LYPLAL1	rs2820464-G	0.66	7E-9		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2261	chr1	219694902	219694903	rs12034581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs12034581-C	NR	1E-8		0.0175621	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219696754	219696755	rs12117397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs12117397-A	NR	5E-12		0.0211216	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219696754	219696755	rs12117397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs12117397-A	NR	3E-11		0.0202423	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219699049	219699050	rs116771750	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		1q41	ZC3H11B	rs116771750-C	NR	2E-7		0.046	[0.028-0.064] dioptres decrease	NR [5900115] (imputed)	N
2261	chr1	219700518	219700519	rs2785980	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	1q41	LYPLAL1	rs2785980-C	0.313000810890311	3E-13		0.047816414	unit increase	Illumina [265780]	N
2261	chr1	219700518	219700519	rs2785980	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA	1q41	LYPLAL1	rs2785980-C	0.292340542493901	3E-9		0.017520346	[0.012-0.023] unit decrease	Illumina [197481]	N
2261	chr1	219700518	219700519	rs2785980	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	1q41	LYPLAL1	rs2785980-T	0.6726	2E-8		2.19E-4	[-0.00097-0.00141] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
2261	chr1	219700518	219700519	rs2785980	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	1q41	LYPLAL1	rs2785980-T	0.6685	7E-8		0.0152	[0.0091-0.0213] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs76926608-A	NR	7E-19		0.072909	[0.057-0.089] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs76926608-A	NR	2E-19		0.0739845	[0.058-0.09] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs76926608-A	NR	3E-8		0.0458494	[0.03-0.062] unit increase	Affymetrix [321114] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs76926608-A	NR	2E-17		0.0727206	[0.056-0.089] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs76926608-A	NR	3E-10		0.0518675	[0.036-0.068] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219704938	219704939	rs76926608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs76926608-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219705022	219705023	rs4492631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs4492631-G	NR	3E-20		0.0274052	[0.022-0.033] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219706427	219706428	rs10746385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs10746385-T	NR	6E-12		0.0222709	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	5E-48		0.0471625	[0.041-0.054] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	5E-47		0.0466328	[0.04-0.053] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	5E-14		0.0245861	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	9E-46		0.0477776	[0.041-0.054] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs2485301-A	NR	4E-12		0.0256925	[0.018-0.033] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	1E-37		0.0414285	[0.035-0.048] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs2485301-A	NR	4E-8		0.0193925	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219707073	219707074	rs2485301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2485301-A	NR	2E-14		0.0250703	[0.019-0.031] unit decrease	Affymetrix [321169] (imputed)	N
2261	chr1	219711338	219711339	rs72732576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs72732576-A	NR	7E-10		0.0546556	[0.037-0.072] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219713863	219713864	rs7513749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs7513749-G	NR	3E-53		0.0436124	[0.038-0.049] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219713863	219713864	rs7513749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs7513749-G	NR	2E-51		0.0428781	[0.037-0.048] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219713863	219713864	rs7513749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs7513749-G	NR	1E-13		0.0212974	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
2261	chr1	219713863	219713864	rs7513749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs7513749-G	NR	2E-16		0.023693	[0.018-0.029] unit decrease	Affymetrix [321169] (imputed)	N
2261	chr1	219719624	219719625	rs78190323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	1q41		rs78190323-A	NR	8E-11		0.0726	[0.051-0.095] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
2261	chr1	219719624	219719625	rs78190323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	1q41		rs78190323-A	NR	1E-15		0.1003	[0.076-0.125] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
2261	chr1	219721282	219721283	rs11118336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118336-C	NR	2E-48		0.0431648	[0.037-0.049] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219721282	219721283	rs11118336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs11118336-C	NR	5E-45		0.0398953	[0.034-0.045] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219721282	219721283	rs11118336	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	1q41	TGFB2	rs11118336-C	0.42	1E-6		1.11	[1.06-1.16]	Illumina [up to 7441713] (imputed)	N
2261	chr1	219722103	219722104	rs4846565	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	1q41	LYPLAL1	rs4846565-G	0.6722	3E-24	(EA, women)	0.0618	[0.05-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2261	chr1	219722103	219722104	rs4846565	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	1q41	LYPLAL1	rs4846565-?	0.6720999999999999	2E-26	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2261	chr1	219722103	219722104	rs4846565	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs4846565-A	0.3282	5E-11	(EA)	0.0231	[0.016-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219722103	219722104	rs4846565	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs4846565-A	0.3282	4E-25	(EA, women)	0.0478	[0.039-0.057] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219723405	219723406	rs10735496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs10735496-T	NR	1E-9		0.0195474	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
2261	chr1	219726099	219726100	rs1337101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q41		rs1337101-T	NR	9E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2261	chr1	219727778	219727779	rs3001032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q41	NR	rs3001032-C	0.319731	1E-37		0.0111685	[0.0094-0.0129] unit increase	Affymetrix [16582909] (imputed)	N
2261	chr1	219727778	219727779	rs3001032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q41	NR	rs3001032-C	0.319697	4E-29		0.014655	[0.012-0.017] unit increase	Affymetrix [16585854] (imputed)	N
2261	chr1	219727778	219727779	rs3001032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q41	NR	rs3001032-C	0.319731	2E-20		0.00918505	[0.0072-0.0111] unit increase	Affymetrix [16582965] (imputed)	N
2261	chr1	219727778	219727779	rs3001032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q41	NR	rs3001032-C	0.319697	1E-15		0.0119862	[0.009-0.015] unit increase	Affymetrix [16585866] (imputed)	N
2261	chr1	219727778	219727779	rs3001032	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	1q41	LYPLAL1	rs3001032-T	0.70	4E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2261	chr1	219730005	219730006	rs1415293	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q41	intergenic	rs1415293-A	0.6994	1E-9		0.1745	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
2261	chr1	219730094	219730095	rs12040264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs12040264-G	NR	2E-8		0.0175284	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
2261	chr1	219730094	219730095	rs12040264	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	1q41	NR	rs12040264-T	0.603974	2E-16		0.0561375	[0.043-0.07] unit increase	Affymetrix [17914406] (imputed)	N
2261	chr1	219731272	219731273	rs10779360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs10779360-C	NR	1E-14		0.0240698	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219734829	219734829	rs5781131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs5781131-GA	NR	3E-16		0.0233706	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219734829	219734829	rs5781131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs5781131-GA	NR	3E-15		0.0225467	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219734829	219734829	rs5781131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs5781131-GA	NR	2E-21		0.0281658	[0.022-0.034] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219734829	219734829	rs5781131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs5781131-GA	NR	5E-9		0.0190586	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
2261	chr1	219734959	219734960	rs2820441	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q41	NR	rs2820441-C	0.317523	3E-13		0.0085977	[0.0062-0.011] unit increase	Affymetrix [16582621] (imputed)	N
2261	chr1	219734959	219734960	rs2820441	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q41	NR	rs2820441-C	0.317523	3E-9		0.00741393	[0.0048-0.01] unit increase	Affymetrix [16582614] (imputed)	N
2261	chr1	219734959	219734960	rs2820441	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	intergenic	rs2820441-A	0.707	8E-17		0.0256	[0.02-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2261	chr1	219735455	219735456	rs138495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs138495054-C	NR	9E-13		0.0256262	[0.019-0.033] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219735455	219735456	rs138495054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs138495054-C	NR	3E-17		0.0290662	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219736051	219736051	rs771691336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs771691336-C	NR	2E-9		0.0171973	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219736051	219736051	rs771691336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs771691336-C	NR	1E-8		0.0162482	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219736062	219736063	rs9431182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs9431182-G	NR	1E-31		0.0327936	[0.027-0.038] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219736062	219736063	rs9431182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs9431182-G	NR	1E-15		0.0245067	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219741819	219741820	rs2820444	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q41	NR	rs2820444-G	0.713	9E-21		0.0472	[0.037-0.057] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2261	chr1	219741819	219741820	rs2820444	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q41	NR	rs2820444-?	NR	7E-6	(male)	0.12702	[0.071-0.183] unit increase	Affymetrix [7794483] (imputed)	N
2261	chr1	219741819	219741820	rs2820444	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q41	NR	rs2820444-?	NR	4E-10		0.14394	[0.099-0.189] unit increase	Affymetrix [7794483] (imputed)	N
2261	chr1	219741819	219741820	rs2820444	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q41	intergenic	rs2820444-A	0.2801	1E-13		0.1621	[0.12-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
2261	chr1	219742536	219742537	rs1415287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs1415287-T	NR	1E-22		0.0341757	[0.027-0.041] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219743718	219743719	rs11118346	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q41	LYPLAL1	rs11118346-T	0.47	2E-12		0.025	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
2261	chr1	219744137	219744138	rs2785988	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	1q41	NR	rs2785988-A	0.3	7E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2261	chr1	219744137	219744138	rs2785988	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	1q41	NR	rs2785988-A	0.3	2E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2261	chr1	219744137	219744138	rs2785988	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	1q41	Intergenic	rs2785988-A	NR	4E-10	(additive)	1.08	[1.06-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
2261	chr1	219747226	219747226	rs749853052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs749853052-T	NR	5E-18		0.0267379	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
2261	chr1	219748778	219748779	rs2785991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2785991-A	NR	2E-15		0.0282824	[0.021-0.035] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs58727484-T	NR	6E-27		0.0431466	[0.035-0.051] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs58727484-T	NR	2E-26		0.0427171	[0.035-0.051] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs58727484-T	NR	2E-28		0.0461674	[0.038-0.054] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs58727484-T	NR	1E-8		0.0260028	[0.017-0.035] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs58727484-T	NR	2E-33		0.0482637	[0.04-0.056] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-95P13.2	rs58727484-T	NR	5E-11		0.0286855	[0.02-0.037] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs58727484-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219748783	219748784	rs58727484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	1q41	RP11-95P13.2	rs58727484-T	0.1398	8E-7		0.0624	[0.038-0.087] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2261	chr1	219748817	219748818	rs2820446	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	1q41	ZC3H11B-LYPLAL1	rs2820446-G	0.2863	3E-12				Affymetrix, Illumina [2331072] (imputed)	N
2261	chr1	219748817	219748818	rs2820446	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q41	NR	rs2820446-G	0.2993	2E-22		0.0407	[0.032-0.049] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2261	chr1	219748817	219748818	rs2820446	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q41	LYPLAL1	rs2820446-C	0.7055	3E-16		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2261	chr1	219748817	219748818	rs2820446	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	1q41	LYPLAL1	rs2820446-C		2E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [2500000] (imputed)	N
2261	chr1	219750716	219750717	rs4846567	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q41		rs4846567-T	0.2946	3E-12		0.17856215	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
2261	chr1	219750716	219750717	rs4846567	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q41		rs4846567-T	0.2947	1E-28		0.19275264	[0.16-0.23] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
2261	chr1	219750716	219750717	rs4846567	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	1q41		rs4846567-T	0.2834	4E-8		5.50593	z score decrease	Affymetrix, Illumina [246710] (imputed)	N
2261	chr1	219750716	219750717	rs4846567	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	1q41	LYPLAL1	rs4846567-G	0.71	7E-21		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2820443-C	NR	1E-84		0.0597226	[0.054-0.066] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2820443-C	NR	3E-82		0.0588869	[0.053-0.065] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2820443-C	NR	2E-81		0.0608762	[0.055-0.067] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2820443-C	NR	3E-83		0.0590875	[0.053-0.065] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs2820443-C	NR	6E-24		0.0313106	[0.025-0.037] unit decrease	Affymetrix [321169] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	1q41	NR	rs2820443-C	0.3	6E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	intergenic	rs2820443-C	0.290472	8E-20		0.02458	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	intergenic	rs2820443-C	0.290472	3E-25	(females)	0.03664	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	intergenic	rs2820443-C	0.290472	7E-24		0.02669	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q41	intergenic	rs2820443-C	0.290472	2E-30	(females)	0.03991	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q41	SLC30A10	rs2820443-T	0.7112	4E-23		0.187	[0.15-0.22] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		1q41	ZC3H11B, LYPLAL1	rs2820443-T	NR	3E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [1918233] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	2E-16	(women)	0.0317	[0.024-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	1E-10		0.0203	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	6E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	2E-17	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	7E-28	(women)	0.0565	[0.046-0.067] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs2820443-T	0.7255	4E-16		0.0314	[0.024-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	1q41	LYPLAL1	rs2820443-T	0.710046577	8E-7	(East Asian women)	0.0401	[0.024-0.056] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	1q41	SLC30A10, RNU5F -1, BPNT1, EPRS, LOC643723, LYPLAL1	rs2820443-T	0.7153	4E-33				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q41	LYPLAL1	rs2820443-T	0.72	1E-18				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	1q41	LYPLAL1, SLC30A10, RNU5F-1, BPNT1, EPRS, LOC643723	rs2820443-T	0.715262510834857	1E-23	(women)	0.0635	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	1q41	LYPLAL1, SLC30A10, RNU5F-1, BPNT1, EPRS, LOC643723	rs2820443-T	0.72	5E-14	(women)	0.061	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	1q41	LYPLAL1, SLC30A10, BPNT1, EPRS, LOC643723, RNU5F-1	rs2820443-T	0.71526	1E-19		0.0635	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7209	5E-20		0.0337	[0.026-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7204	3E-35	(women)	0.0613	[0.051-0.071] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7168	6E-35	(EA, women)	0.0616	[0.052-0.071] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7167	5E-21	(EA)	0.0349	[0.028-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	ZC3H11B	rs2820443-T	0.717	4E-35	(EA, women)	0.0622	[0.052-0.072] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	ZC3H11B	rs2820443-T	0.717	3E-8	(EA,men)	0.031	[0.02-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	ZC3H11B	rs2820443-T	0.717	1E-35	(EA)	0.0482	[0.041-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7171	9E-6	(EA, men)	0.0237	[0.013-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7171	5E-18	(EA)	0.0336	[0.026-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs2820443-T	0.7171	2E-15	(EA,women)	0.0405	[0.031-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219753508	219753509	rs2820443	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	1q41	LYPLAL1, SLC30A10, ZC3H11B	rs2820443-T		7E-16	(WHRadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
2261	chr1	219754013	219754013	rs199867305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q41		rs199867305-CT	NR	9E-18		0.0234	[0.018-0.029] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
2261	chr1	219754013	219754013	rs199867305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	1q41		rs199867305-CT	NR	1E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2261	chr1	219754981	219754982	rs6677960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs6677960-A	NR	8E-15		0.0234466	[0.018-0.029] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	5E-37		0.0380212	[0.032-0.044] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	1E-37		0.0383403	[0.032-0.044] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	5E-16		0.0244653	[0.019-0.03] unit increase	Affymetrix [321114] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	3E-26		0.03297	[0.027-0.039] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	4E-18		0.025881	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219755188	219755188	rs752784316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-95P13.2	rs752784316-TC	NR	2E-15		0.0240386	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
2261	chr1	219759732	219759733	rs3897379	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs3897379-A	0.1974	3E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219759732	219759733	rs3897379	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	LYPLAL1	rs3897379-A	0.1974	7E-7	(women)	0.0272	[0.016-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2261	chr1	219759732	219759733	rs3897379	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	LYPLAL1	rs3897379-A	0.1882	2E-8	(EA,women)	0.0314	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2261	chr1	219760461	219760462	rs9431594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs9431594-T	NR	2E-8		0.0545034	[0.035-0.074] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219760461	219760462	rs9431594	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs9431594-T	NR	2E-8		0.0544691	[0.035-0.074] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219762069	219762070	rs6683926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs6683926-G	NR	2E-37		0.0456612	[0.039-0.053] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219762069	219762070	rs6683926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs6683926-G	NR	9E-38		0.045849	[0.039-0.053] unit increase	Affymetrix [319769] (imputed)	N
2261	chr1	219762069	219762070	rs6683926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs6683926-G	NR	4E-16		0.0293942	[0.022-0.036] unit increase	Affymetrix [321169] (imputed)	N
2261	chr1	219762069	219762070	rs6683926	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q41	SLC30A10	rs6683926-?	NR	2E-13		0.0245	[0.019-0.03] unit increase	Affymetrix [5701386] (imputed)	N
2261	chr1	219762580	219762581	rs2494196	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hernia abdominopelvic cavity	6,291 European ancestry cases, 50,346 European ancestry controls	NA	1q41		rs2494196-A	0.2741259	2E-8		1.13		Affymetrix [15565029] (imputed)	N
2261	chr1	219762580	219762581	rs2494196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q41		rs2494196-A	0.286611	3E-9		0.014455328	[0.0097-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
2261	chr1	219764096	219764097	rs2788904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs2788904-T	NR	3E-26		0.0401434	[0.033-0.048] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219768130	219768131	rs72629670	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	1q41	ZC3H11B	rs72629670-A	NR	4E-10		1.081081	[1.05-1.11]	NR [5921785] (imputed)	N
2261	chr1	219768756	219768757	rs115330848	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs115330848-?	NR	1E-22		0.0389068	[0.031-0.047] unit increase	Affymetrix [20259828] (imputed)	N
2261	chr1	219770721	219770722	rs6696190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs6696190-G	NR	4E-16		0.0297568	[0.023-0.037] unit increase	Affymetrix [321114] (imputed)	N
2261	chr1	219771720	219771721	rs4846569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	ZC3H11B	rs4846569-T	NR	9E-23		0.0329276	[0.026-0.039] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219771720	219771721	rs4846569	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	1q41	GCKR	rs4846569-C	0.7057	1E-7		1.0638298	[1.04-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
2261	chr1	219775431	219775432	rs994767	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	1q41	LOC388739, LOC728518, ZC3H11B	rs994767-A	0.4085	1E-11		0.0716	[0.051-0.092] unit decrease	Illumina [2500000] (imputed)	N
2261	chr1	219778674	219778675	rs12028838	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	1q41	NR	rs12028838-?	NR	7E-6		0.121881	[0.069-0.175] unit increase	NR [13958389] (imputed)	N
2261	chr1	219778674	219778675	rs12028838	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	1q41	NR	rs12028838-G		2E-16		0.09	[0.07-0.11] unit increase	NR [NR]	N
2261	chr1	219778958	219778959	rs12032649	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	1q41	ZC3H11B	rs12032649-G	0.521	2E-11		1.29	NR	Affymetrix, Illumina [4996193] (imputed)	N
2261	chr1	219778958	219778959	rs12032649	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		1q41	ZC3H11B	rs12032649-T	0.614	5E-14		0.022	[0.016-0.028] dioptres decrease	NR [5901671] (imputed)	N
2261	chr1	219783256	219783257	rs183522757	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	LOC102723886	rs183522757-A	0.935396	2E-10		0.0232038	[0.016-0.03] unit increase	NR [13737936] (imputed)	N
2261	chr1	219787412	219787413	rs10779364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs10779364-G	NR	2E-12		0.0198661	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219787412	219787413	rs10779364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs10779364-G	NR	9E-12		0.0191597	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219787412	219787413	rs10779364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs10779364-G	NR	4E-18		0.0253537	[0.02-0.031] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219787412	219787413	rs10779364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs10779364-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219787412	219787413	rs10779364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs10779364-?	NR	5E-32				NR [~ 8900000] (imputed)	N
2261	chr1	219788518	219788519	rs7525202	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q41	TGFB2, SLC30A10	rs7525202-?		1E-40				Affymetrix, Illumina [NR] (imputed)	N
2261	chr1	219788529	219788530	rs7538503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q41	ZC3H11B	rs7538503-G	NR	2E-8		0.0191566	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219789461	219789462	rs7544369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs7544369-C	NR	2E-21		0.0267105	[0.021-0.032] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219789821	219789822	rs2378280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs2378280-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219790168	219790169	rs11118366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	ZC3H11B	rs11118366-T	NR	4E-10		0.0198156	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
2261	chr1	219790220	219790221	rs11118367	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q41	LYPLAL1	rs11118367-T	0.4824	3E-13		7.288	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
2261	chr1	219791821	219791822	rs1009859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1009859-A	NR	1E-10		0.0196444	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
2261	chr1	219791821	219791822	rs1009859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1009859-A	NR	9E-16		0.0236453	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
2261	chr1	219792306	219792307	rs12136985	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12136985-T	0.860543	3E-9		0.0747097	[0.049-0.101] increase	Affymetrix [11014269] (imputed)	N
2261	chr1	219794384	219794385	rs75977651	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs75977651-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1338219-A	NR	3E-38		0.0383678	[0.033-0.044] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1338219-A	NR	1E-37		0.0380679	[0.032-0.044] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1338219-A	NR	7E-44		0.0427718	[0.037-0.049] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	ZC3H11B	rs1338219-A	NR	2E-13		0.0249167	[0.018-0.032] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1338219-A	NR	9E-42		0.0400403	[0.034-0.046] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	ZC3H11B	rs1338219-A	NR	1E-11		0.0218616	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1338219-A	NR	2E-9		0.0180131	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
2261	chr1	219797674	219797675	rs1338219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q41		rs1338219-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2261	chr1	219797742	219797743	rs76290000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs76290000-G	NR	3E-14		0.075746	[0.056-0.095] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219797742	219797743	rs76290000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs76290000-G	NR	2E-9		0.0572187	[0.038-0.076] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219798500	219798501	rs17546126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs17546126-G	NR	2E-12		0.0558034	[0.04-0.071] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1415991-G	NR	2E-30		0.0360282	[0.03-0.042] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1415991-G	NR	3E-29		0.0352793	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1415991-G	NR	2E-37		0.0417434	[0.035-0.048] unit increase	Affymetrix [321788] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	1q41	ZC3H11B	rs1415991-G	NR	2E-11		0.0240979	[0.017-0.031] unit increase	Affymetrix [323858] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs1415991-G	NR	2E-42		0.0428203	[0.037-0.049] unit increase	Affymetrix [321016] (imputed)	N
2261	chr1	219798631	219798632	rs1415991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q41	ZC3H11B	rs1415991-G	NR	5E-14		0.025697	[0.019-0.032] unit increase	Affymetrix [323123] (imputed)	N
2261	chr1	219799244	219799245	rs6704155	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	1q41	NR	rs6704155-G	NR	5E-7	(AA)	0.160377	[0.098-0.223] unit increase	Affymetrix [up to 6007810] (imputed)	N
2261	chr1	219800030	219800031	rs77841443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	ZC3H11B	rs77841443-C	NR	7E-10		0.0291365	[0.02-0.038] unit decrease	Affymetrix [321016] (imputed)	N
2262	chr1	219821066	219821067	rs4472763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	AC096643.1	rs4472763-C	NR	5E-9		0.028494	[0.019-0.038] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219845807	219845808	rs17006312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	AC096643.1	rs17006312-A	NR	2E-8		0.0409143	[0.027-0.055] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219853741	219853742	rs1338227	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	RNU5F-1	rs1338227-T	0.5774	4E-24		0.0245	[0.02-0.029] unit increase	Affymetrix [19819130] (imputed)	N
2262	chr1	219887048	219887049	rs17006382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q41	NR	rs17006382-G	0.01045	2E-8	(TXNL1)	0.05731	NR unit increase	Illumina [1671387] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs4846580-G	NR	2E-9		0.0178843	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	1E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	6E-10			[NR]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	9E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	1E-9		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	2E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	1q41	NR	rs4846580-G	0.44	1E-5		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
2262	chr1	219897940	219897941	rs4846580	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1q41	NR	rs4846580-A	0.5329	3E-9		0.0345	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
2262	chr1	219898403	219898404	rs79278470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs79278470-T	NR	3E-9		0.0347691	[0.023-0.046] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219898403	219898404	rs79278470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs79278470-T	NR	5E-13		0.0407616	[0.03-0.052] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219903141	219903142	rs4120823	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	1q41	NR	rs4120823-?	NR	5E-7			[NR]	Illumina [5432814] (imputed)	N
2262	chr1	219909623	219909623	rs58148420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs58148420-G	NR	2E-15		0.0286248	[0.022-0.036] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219914387	219914388	rs79552429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs79552429-C	NR	3E-9		0.0427874	[0.029-0.057] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219915202	219915203	rs76015848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs76015848-G	NR	4E-12		0.0315588	[0.023-0.04] unit decrease	Affymetrix [321016] (imputed)	N
2262	chr1	219920923	219920924	rs1766400	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	1q41		rs1766400-?	NR	1E-8				NR [9705931] (imputed)	N
2262	chr1	219924893	219924894	rs11118406	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1q41	SLC30A10	rs11118406-T	0.28	4E-11		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
2262	chr1	219926008	219926009	rs12134534	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	RNU5F-1	rs12134534-T	0.400794	5E-32		0.0223041	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
2262	chr1	219926008	219926009	rs12134534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs12134534-?	NR	1E-28				NR [~ 8900000] (imputed)	N
2262	chr1	219926008	219926009	rs12134534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs12134534-?	NR	2E-38				NR [~ 8900000] (imputed)	N
2262	chr1	219926008	219926009	rs12134534	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs12134534-?	NR	1E-35		0.02479	[0.021-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
2262	chr1	219926543	219926544	rs11807484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs11807484-T	NR	1E-12		0.023218	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219927428	219927429	rs1418752	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	LOC102723886, RNU5F-1	rs1418752-T	0.2614	4E-12		0.11	[0.079-0.141] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2262	chr1	219928298	219928299	rs112146875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs112146875-C	NR	2E-8		0.0434744	[0.028-0.059] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219928560	219928561	rs10863496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs10863496-T	NR	4E-8		0.0208036	[0.013-0.028] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219928610	219928611	rs11118411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs11118411-T	NR	2E-15		0.0267331	[0.02-0.033] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219929280	219929281	rs12024492	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	1q41	LOC102723886, RNU5F-1	rs12024492-C	0.2639	2E-12		0.111	[0.08-0.142] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2262	chr1	219930094	219930095	rs17006547	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs17006547-C	0.852284	9E-10		0.0722814	[0.047-0.097] decrease	Affymetrix [11014269] (imputed)	N
2262	chr1	219933022	219933023	rs11118414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs11118414-C	NR	2E-9		0.0237574	[0.016-0.032] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219933022	219933023	rs11118414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs11118414-C	NR	9E-10		0.0232864	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219933202	219933203	rs77600686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs77600686-A	NR	2E-9		0.0396023	[0.027-0.052] unit increase	Affymetrix [321016] (imputed)	N
2262	chr1	219934246	219934247	rs17006588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs17006588-A	NR	2E-10		0.029239	[0.02-0.038] unit increase	Affymetrix [321788] (imputed)	N
2262	chr1	219934246	219934247	rs17006588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs17006588-A	NR	2E-12		0.0311253	[0.022-0.04] unit increase	Affymetrix [321016] (imputed)	N
2263	chr1	219962547	219962548	rs7518186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs7518186-A	NR	2E-15		0.0270993	[0.02-0.034] unit increase	Affymetrix [321788] (imputed)	N
2263	chr1	219962547	219962548	rs7518186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs7518186-A	NR	7E-16		0.0264853	[0.02-0.033] unit increase	Affymetrix [321016] (imputed)	N
2263	chr1	219962547	219962548	rs7518186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	1q41		rs7518186-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2263	chr1	219962547	219962548	rs7518186	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q41	NR	rs7518186-A	0.239874	2E-13		0.0264185	[0.019-0.033] unit decrease	NR [19129689] (imputed)	N
2263	chr1	219963090	219963090	rs201204531	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	1q41	LYPLAL1, RNU5F-1	rs201204531-A	NR	3E-10	(adults)	0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
2263	chr1	219969404	219969405	rs1857237	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1q41	RNU5F-1	rs1857237-?	NR	9E-14		0.005156	[-0.00011-0.01042] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2263	chr1	219969404	219969405	rs1857237	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1q41	RNU5F-1	rs1857237-?	NR	5E-6	(Hispanic/Latino)	0.01233	[-0.00502-0.02968] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2263	chr1	219969404	219969405	rs1857237	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (1df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1q41	RNU5F-1	rs1857237-?	NR	3E-10		0.0429	[0.03-0.056] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2263	chr1	219972827	219972828	rs149773150	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	1q41		rs149773150-A	0.0047	5E-8		0.8073	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2263	chr1	219976867	219976868	rs148656801	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	1q41		rs148656801-?	NR	2E-6		0.2880312	[0.17-0.41] unit increase	Illumina [9939936] (imputed)	N
2263	chr1	220012284	220012285	rs74139216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs74139216-A	NR	2E-11		0.0341438	[0.024-0.044] unit increase	Affymetrix [321788] (imputed)	N
2263	chr1	220012284	220012285	rs74139216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs74139216-A	NR	4E-13		0.0354601	[0.026-0.045] unit increase	Affymetrix [321016] (imputed)	N
2263	chr1	220012709	220012710	rs149771295	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	1q41	SLC30A10	rs149771295-?	NR	9E-10	(female)	1.77062	[NR] unit increase	Affymetrix [NR] (imputed)	N
2263	chr1	220012709	220012710	rs149771295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q41	SLC30A10	rs149771295-G	NR	3E-9		0.0477158	[0.032-0.063] unit increase	Affymetrix [321016] (imputed)	N
2263	chr1	220039255	220039256	rs9661050	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs9661050-?	NR	5E-27		0.0251295	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
2263	chr1	220040219	220040220	rs201324539	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs201324539-?	NR	2E-29		0.0267179	[0.022-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
2263	chr1	220040219	220040220	rs201324539	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	RNU5F-1	rs201324539-G	0.274529	2E-15		0.0315777	[0.024-0.039] unit decrease	NR [17166351] (imputed)	N
2263	chr1	220040219	220040220	rs201324539	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	RNU5F-1	rs201324539-G	0.27411	7E-13	(women)	0.0378685	[0.027-0.048] unit decrease	NR [17166351] (imputed)	N
2263	chr1	220052719	220052720	rs11118448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	1q41	SLC30A10	rs11118448-G	NR	2E-9		0.0184883	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
2264	chr1	220075025	220075026	rs10863511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q41	SLC30A10	rs10863511-G	0.797745	3E-17		0.023606308	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr1	220078827	220078828	rs2378331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q41	SLC30A10	rs2378331-G	0.797504	2E-21		0.026537584	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr1	220079891	220079897	rs10585105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q41	SLC30A10	rs10585105-T	0.804357	1E-12		0.020086085	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2264	chr1	220080027	220080028	rs1776029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs1776029-A	0.190934	1E-18				Affymetrix, Illumina [22063850] (imputed)	N
2264	chr1	220080027	220080028	rs1776029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q41	NR	rs1776029-A	0.194095	6E-22		0.022952	[0.018-0.028] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2264	chr1	220080027	220080028	rs1776029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q41		rs1776029-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2264	chr1	220082149	220082150	rs884127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	1q41		rs884127-A	NR	3E-9		0.0677	[0.045-0.09] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
2264	chr1	220082149	220082150	rs884127	27915449	Corre T	2016-12-03	Pflugers Arch	Common variants in CLDN14 are associated with differential excretion of magnesium over calcium in urine.	Urinary electrolytes (magnesium/calcium ratio)	7,498 European ancestry individuals, 1,541 Val Borbera (founder/genetic isolated) individuals, 281 Carlantino (founder/genetic isolated) individuals	NA	1q41	SLC30A10	rs884127-A	0.3754	3E-9		0.0946	[0.063-0.126] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2264	chr1	220085452	220085453	rs3011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q41		rs3011-C	NR	1E-18		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
2264	chr1	220085452	220085453	rs3011	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q41	NR	rs3011-C	0.3689	3E-16		0.001904	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
2264	chr1	220086196	220086196	rs5781151	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q41	SLC30A10	rs5781151-CA	0.7838	5E-16		0.03573958	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr1	220086196	220086196	rs5781151	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q41	SLC30A10	rs5781151-CA	0.7838	2E-13		0.03230077	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr1	220088046	220088047	rs2275707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q41		rs2275707-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2264	chr1	220088046	220088047	rs2275707	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs2275707-?	NR	3E-33		0.0305164	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
2264	chr1	220088046	220088047	rs2275707	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	RNU5F-1	rs2275707-C	0.205709	8E-7	(women)	0.0263628	[0.015-0.038] unit increase	NR [17166351] (imputed)	N
2264	chr1	220088046	220088047	rs2275707	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	RNU5F-1	rs2275707-C	0.205346	1E-17		0.0335379	[0.025-0.042] unit increase	NR [17166351] (imputed)	N
2264	chr1	220088046	220088047	rs2275707	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	RNU5F-1	rs2275707-C	0.204931	9E-11	(men)	0.0391551	[0.027-0.052] unit increase	NR [17166351] (imputed)	N
2264	chr1	220093999	220094000	rs1776050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q41	SLC30A10	rs1776050-C	0.809951	3E-29		0.031863984	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr1	220093999	220094000	rs1776050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q41	SLC30A10	rs1776050-C	0.809946	1E-32		0.033599664	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr1	220093999	220094000	rs1776050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q41	SLC30A10	rs1776050-C	0.809938	1E-27		0.030856475	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr1	220100497	220100497	rs759359281	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	1q41	SLC30A10	rs759359281-C	0.06	3E-8		0.137	[0.086-0.188] unit increase	Affymetrix [~ 12000000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q41		rs188273166-A	NR	1E-28		0.3599	[0.3-0.42] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Extrahepatic cholangiocarcinoma	148 British ancestry cases, 408,035 British ancestry controls	NA	1q41	SLC30A10	rs188273166-?	NR	1E-8				Affymetrix [11811438] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q41	SLC30A10	rs188273166-?	NR	5E-31		0.0419	[0.034-0.05] unit increase	Affymetrix [21347608] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q41	SLC30A10	rs188273166-?	NR	2E-24		0.0589	[0.046-0.071] unit increase	Affymetrix [21347608] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	1q41		rs188273166-?	NR	1E-14		0.224402	[0.16-0.28] unit decrease	NR [9800000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	1q41		rs188273166-?	NR	8E-34		0.37317	[0.31-0.43] unit increase	NR [9800000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	1q41		rs188273166-?	NR	2E-10		0.191142	[0.13-0.25] unit decrease	NR [9800000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	1q41		rs188273166-?	NR	1E-21		0.294523	[0.23-0.36] unit increase	NR [9800000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q41	NR	rs188273166-A	NR	7E-11		0.2352	[0.16-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q41	NR	rs188273166-A	NR	8E-30		0.3912	[0.32-0.46] unit increase	Affymetrix [9000000] (imputed)	N
2264	chr1	220101498	220101499	rs188273166	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q41	NR	rs188273166-A	NR	2E-20		0.3187	[0.25-0.39] unit increase	Affymetrix [9000000] (imputed)	N
2264	chr1	220136959	220136960	rs72743160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q41	Intergenic	rs72743160-C	0.1926	9E-9	(MTAG)	0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2264	chr1	220145370	220145371	rs2795315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs2795315-?	NR	2E-39				NR [~ 8900000] (imputed)	N
2264	chr1	220156089	220156090	rs2647462	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	RNU5F-1	rs2647462-T	0.173272	6E-45		0.0340613	[0.029-0.039] unit increase	NR [13737936] (imputed)	N
2264	chr1	220189136	220189137	rs11325774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q41	EPRS	rs11325774-T	0.8224	3E-15		0.0366589	[0.028-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr1	220189136	220189137	rs11325774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q41	EPRS	rs11325774-T	0.8224	5E-19		0.04187391	[0.033-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr1	220189136	220189137	rs11325774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q41	EPRS	rs11325774-T	0.8224	1E-17		0.04020575	[0.031-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
2265	chr1	220224320	220224321	rs2577134	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q41	RNU5F-1	rs2577134-T	0.6773	3E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2265	chr1	220288689	220288690	rs551459670	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	1q41	IARS2	rs551459670-A	0.011	1E-13		0.14	[0.1-0.18] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
2265	chr1	220301439	220301440	rs181075745	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q41	NR	rs181075745-?	NR	9E-6		5129.409	NR unit decrease	Illumina [2379855]	N
2266	chr1	220357845	220357846	rs116518462	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q41	NR	rs116518462-G	0.0357	3E-8		0.0163656	[0.011-0.022] unit increase	NR [9732723] (imputed)	N
2266	chr1	220361796	220361797	rs12025326	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q41		rs12025326-G	0.964	2E-8		0.017	[0.011-0.023] unit decrease	NR [NR] (imputed)	N
2266	chr1	220381756	220381757	rs114959389	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	1q41	NR	rs114959389-C	0.009858	2E-6		0.7393	[0.44-1.04] unit increase	Illumina [10677593] (imputed)	N
2266	chr1	220415929	220415930	rs74565497	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	1q41	RAB3GAP2	rs74565497-?	NR	5E-7				Affymetrix [5908111] (imputed)	N
2266	chr1	220419572	220419573	rs12402633	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q41	NR	rs12402633-T	0.1843	9E-9				NR [9056863] (imputed)	N
2266	chr1	220452965	220452966	rs12411242	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q41		rs12411242-G	0.15	9E-20		9.1	z score increase	Affymetrix [9061022] (imputed)	N
2266	chr1	220452965	220452966	rs12411242	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q41		rs12411242-G	0.15	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
2267	chr1	220487764	220487765	rs548089948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stevens-Johnson syndrome	93 East Asian ancestry cases, 171,753 East Asian ancestry controls	NA	1q41		rs548089948-G	6.06891E-4	2E-8		45.062294	[29.25-60.87] unit increase	Illumina [13429124] (imputed)	N
2267	chr1	220487764	220487765	rs548089948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stevens-Johnson syndrome	312 European ancestry cases, 483,011 European ancestry controls, 93 East Asian ancestry cases, 171,753 East Asian ancestry controls	NA	1q41		rs548089948-G	NR	2E-8		45.0623	[29.25-60.87] unit increase	Affymetrix, Illumina [25844251] (imputed)	N
2267	chr1	220498635	220498636	rs4846314	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (depression)	1,863 Japanese ancestry female cases, 3,871 Japanese ancestry female controls	2,005 Japanese ancestry female cases, 3,609 Japanese ancestry female controls	1q41	NR	rs4846314-A	0.25004333	6E-6		0.14602003	[0.083-0.209] unit increase	Affymetrix [536506]	N
2267	chr1	220551481	220551482	rs147843882	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q41	AC096644.1	rs147843882-A	0.00900841323366759	2E-6	(G_Streptococcus_HB)	1.4651	[0.87-2.06] unit decrease	Illumina [7711310] (imputed)	N
2267	chr1	220584871	220584872	rs138833465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q41	Intergenic	rs138833465-G	0.992	1E-6	(AA)	0.12	unit increase	Illumina [NR] (imputed)	N
2268	chr1	220601622	220601623	rs7512221	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	1q41	MARK1	rs7512221-G	0.04	7E-6	(univariate, lower trunk)			Illumina [319818]	N
2268	chr1	220658233	220658234	rs12563333	22205951	Kerner B	2011-12-21	PLoS One	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NA	1q41	MARK1	rs12563333-?	NR	6E-8	(Latent Class 1)			Affymetrix [728331]	N
2268	chr1	220701165	220701165	rs200550907	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	1q41	RAB3GAP2, MARK1	rs200550907-?	NR	8E-7		0.077	[0.107-0.046] unit decrease	Illumina [12039487] (imputed)	N
2269	chr1	220771656	220771657	rs17584607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs17584607-T	NR	8E-12		0.0527	[0.038-0.068] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220874956	220874957	rs150892741	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	1q41		rs150892741-?	NR	4E-6		1.626	[1.323-1.999]	Affymetrix [7975321] (imputed)	N
2270	chr1	220914919	220914920	rs337161	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	1q41	intergenic	rs337161-?	NR	3E-6	(SAS)			Affymetrix [492000]	N
2270	chr1	220929355	220929356	rs1494373	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	1q41	MOSC2	rs1494373-?	NR	6E-6	(SAS)			Affymetrix [492000]	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	1E-19		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	1E-12		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	1E-14		0.0186	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	3E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	3E-16		0.0196	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	8E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	1E-11		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	5E-22		0.0232	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	2E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q41	NR	rs1389742-G	NR	2E-22		0.0235	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q41	NR	rs1389742-G	0.574249	4E-25		0.00835388	[0.0067-0.01] unit increase	Affymetrix [16582909] (imputed)	N
2270	chr1	220967682	220967683	rs1389742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q41	NR	rs1389742-G	0.574249	2E-22		0.00881311	[0.007-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	4E-19		0.0381972	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-11		0.029205	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-8		0.0245049	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	4E-9		0.025145	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	7E-10		0.0263065	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	9E-10		0.0271282	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-10		0.0277597	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-16		0.0359845	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	4E-14		0.0324889	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	5E-11		0.0267361	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-16		0.034549	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	4E-8		0.0245558	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-16		0.0323664	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-15		0.0350904	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-18		0.0357103	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	5E-10		0.0274612	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-14		0.0334873	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	6E-17		0.0355755	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	6E-14		0.0318852	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-13		0.0319488	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	7E-20		0.0385544	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	5E-10		0.0260348	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	2E-25		0.0465484	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	3E-13		0.0316508	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	8E-21		0.0412679	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	7E-12		0.0295122	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	4E-9		0.0254974	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-12		0.0316248	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-10		0.0259341	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-15		0.0338665	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-9		0.0272306	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	9E-17		0.0330618	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	7E-13		0.0312727	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-18		0.035642	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	2E-12		0.0300293	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1q41		rs2642438-A	0.296172	6E-13		0.030394	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-18		0.0357106	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-8		0.0248794	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-13		0.03154	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-11		0.028956	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-19		0.0359371	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-16		0.0351201	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-11		0.0281087	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	7E-11		0.0274731	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-9		0.0267254	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-19		0.036829	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-12		0.0310718	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	6E-17		0.0331066	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-9		0.0273623	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-17		0.0372462	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-20		0.037005	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-10		0.0261445	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-17		0.0350811	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-15		0.0312681	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-10		0.0288954	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-16		0.0349061	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	7E-24		0.0427105	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	5E-9		0.0246874	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-16		0.0362403	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-14		0.0332055	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-11		0.0272536	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-16		0.0346635	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	5E-14		0.0301325	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-18		0.038139	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	8E-18		0.0349338	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	5E-23		0.0421483	[0.034-0.051] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-10		0.0282778	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	9E-10		0.0259964	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	8E-11		0.029466	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-19		0.0398211	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-11		0.0297348	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	1E-11		0.0277686	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-17		0.0352884	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-8		0.0251106	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	8E-15		0.0309521	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	3E-18		0.0381422	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	2E-11		0.0268146	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q41		rs2642438-A	0.29615	9E-18		0.0355163	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1q41		rs2642438-G	NR	6E-37		0.0282	[0.024-0.033] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1q41		rs2642438-G	0.818067	2E-9		0.0280596	[0.019-0.037] unit increase	Illumina [13476599] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q41		rs2642438-G	NR	4E-34		0.0276	[0.023-0.032] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	1q41		rs2642438-G	0.81862	6E-9		0.0293833	[0.02-0.039] unit increase	Illumina [13474352] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1q41		rs2642438-G	NR	2E-25		0.0248	[0.02-0.03] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q41		rs2642438-G	NR	4E-34		0.0281	[0.024-0.033] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q41		rs2642438-G	NR	1E-34		0.0262	[0.022-0.03] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q41	MTARC1	rs2642438-?	NR	1E-12		0.0019	[0.0013-0.0025] unit decrease	Affymetrix [21347608] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q41	MTARC1	rs2642438-?	NR	9E-50		0.0065	[0.0055-0.0075] unit decrease	Affymetrix [21347608] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	1q41	MARC1	rs2642438-?	NR	1E-10		0.0545	NR % increase	Affymetrix [9390170] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	1q41	MARCH1	rs2642438-A	0.297414	3E-41		0.00326564	[0.0028-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q41	MAR1	rs2642438-A	0.297417	6E-57		0.00676311	[0.0059-0.0076] unit decrease	Affymetrix [13995440] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q41	43891	rs2642438-G	0.7	9E-34		12.1	z-score increase	Affymetrix [4311822] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q41	C1orf115, HLX	rs2642438-G	0.7	1E-31		11.7	z-score increase	Affymetrix [4312306] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q41	MARC1	rs2642438-?		7E-10		0.0266	[0.018-0.035] unit increase	Illumina [31500000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q41	MARC1	rs2642438-?		4E-8		0.0282	[0.018-0.038] unit increase	Illumina [31500000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	33310085	Emdin CA	2020-12-10	Gastroenterology	Association of genetic variation with cirrhosis: a multi-trait genome-wide association and gene-environment interaction study.	Cirrhosis (multi-trait analysis)	4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements	3,554 European, African, Asian and unknown ancestry cases, 343,286 European, African, Asian and unknown ancestry controls	1q41	MARC1	rs2642438-A	0.29	1E-43				Affymetrix, Illumina [3163456] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	1q41		rs2642438-?	0.2973	9E-13		0.011	unit decrease	NR [6200000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic fatty liver disease	1,483 European ancestry cases, 17,781 European ancestry controls	559 European ancestry cases, 945 European ancestry controls	1q41	MARC1	rs2642438-?	NR	6E-6		1.2239902	NR	Illumina [7412560] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q41	MARC1	rs2642438-A	0.297344	8E-29		0.0253446	[0.021-0.03] unit decrease	Affymetrix [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q41	MARC1	rs2642438-A	0.297302	2E-40		0.027676	[0.024-0.032] unit decrease	Affymetrix [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q41	MARC1	rs2642438-A	0.297377	4E-42		0.0291299	[0.025-0.033] unit decrease	Affymetrix [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q41	MOSC1	rs2642438-?	NR	3E-33		0.0332	[0.028-0.038] unit decrease	Affymetrix [5701386] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	7E-9				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	6E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	3E-10				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	2E-6		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	6E-22				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	3E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	7E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	7E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	2E-22				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	2E-12		1.155	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	1E-8	(EA)	1.1	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	5E-8		1.113	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	9E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	8E-18				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q41	MARC1	rs2642438-G	NR	2E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	3E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q41	MARC1	rs2642438-G	NR	1E-21				Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	6E-11		0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	2E-8	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	5E-9		0.007064	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q41	MARC1	rs2642438-G	NR	3E-7	(EA)	0.009605	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	NR	rs2642438-A	0.2713	7E-16		0.0248	[0.019-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	NR	rs2642438-A	0.2715	6E-13		0.0224	[0.016-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	NR	4E-20		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	0.293	3E-16	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	NR	9E-24		0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	0.293	1E-19	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	NR	7E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642438-A	0.293	5E-7	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	1q41	MARC1	rs2642438-?	NR	2E-8		0.03299	[0.022-0.044] unit increase novel	Illumina [6108953] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1q41	MOSC1	rs2642438-A	0.255	1E-22	(Trans-ethnic initial)	0.037	[0.029-0.045] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1q41	MOSC1	rs2642438-A	0.178	5E-6	(Asian initial, BMI unadjusted)	0.0526	[0.03-0.075] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
2270	chr1	220970027	220970028	rs2642438	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1q41	MOSC1	rs2642438-A	0.255	1E-19	(Trans-ethnic initial)	0.0352	[0.027-0.043] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2270	chr1	220970498	220970499	rs2642439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	1q41		rs2642439-A	0.313203	2E-8		0.0248664	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
2270	chr1	220970592	220970593	rs2807834	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q41		rs2807834-?	NR	6E-12		0.0150625	[0.011-0.019] unit increase	NR [6912294] (imputed)	N
2270	chr1	220970592	220970593	rs2807834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2807834-T	NR	4E-16		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970592	220970593	rs2807834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2807834-T	0.312	1E-13	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970592	220970593	rs2807834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2807834-T	NR	2E-19		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220970592	220970593	rs2807834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2807834-T	0.312	1E-16	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220971047	220971048	rs2807835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q41	NR	rs2807835-T	NR	4E-11		0.0172	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220971047	220971048	rs2807835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q41	NR	rs2807835-T	NR	3E-18		0.0227	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220971047	220971048	rs2807835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q41	NR	rs2807835-T	NR	8E-14		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220971047	220971048	rs2807835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q41	NR	rs2807835-T	NR	1E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220971047	220971048	rs2807835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	1q41	NR	rs2807835-T	NR	1E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2270	chr1	220972342	220972343	rs867772	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q41		rs867772-A	0.315487	2E-12		0.015	[0.011-0.019] unit increase	NR [7250403] (imputed)	N
2270	chr1	220972342	220972343	rs867772	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q41	NR	rs867772-G	0.681808	4E-11		0.013838	[0.0097-0.0179] unit decrease	Affymetrix [16668957] (imputed)	N
2270	chr1	220972342	220972343	rs867772	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q41	NR	rs867772-A	0.2868	2E-11		0.0204	[0.015-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2270	chr1	220973535	220973536	rs11307933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q41		rs11307933-C	NR	2E-16		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	1q41		rs2642442-T	0.311	6E-12		1.15	[1.1-1.2]	Affymetrix [9723654] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1q41		rs2642442-T	0.7158	3E-6		0.8357	[0.49-1.18] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	1q41	NR	rs2642442-T	0.7154	8E-20				Affymetrix, Illumina [at least 2500000] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642442-C	NR	6E-16		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642442-C	0.315	2E-13	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642442-C	NR	2E-18		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs2642442-C	0.315	2E-15	(EA)	0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q41	MOSC1	rs2642442-C	0.33	5E-11		0.036	[NR] unit decrease	NR [NR] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1q41	MOSC1	rs2642442-C	0.33	3E-11		0.035	[NR] unit decrease	NR [NR] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1q41	MOSC1	rs2642442-T	0.32	6E-11		1.09	[0.7-1.48] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2270	chr1	220973562	220973563	rs2642442	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1q41	MOSC1	rs2642442-T	0.32	5E-13		1.38	[0.95-1.81] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2270	chr1	220974544	220974545	rs10863565	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q41	C1orf115, HLX	rs10863565-C	0.76	3E-10		6.3	z-score increase	Affymetrix [4314223] (imputed)	N
2270	chr1	220975336	220975337	rs1874124	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs1874124-C	NR	2E-6		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220975336	220975337	rs1874124	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs1874124-C	0.852	6E-7	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220975336	220975337	rs1874124	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs1874124-C	NR	3E-9		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220975336	220975337	rs1874124	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs1874124-C	0.852	3E-9	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
2270	chr1	220975336	220975337	rs1874124	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1q41	MOSC1	rs1874124-C	0.86	5E-10		0.054	[0.036-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2270	chr1	220977332	220977333	rs6693017	21493818	Shaw SY	2011-04-21	Circ Cardiovasc Genet	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	1q41	MOSC1	rs6693017-G	0.15	3E-7		0.24	[0.14-0.34] unit increase	Affymetrix [~ 2500000] (imputed)	N
2270	chr1	220983016	220983017	rs11118606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	MARCH1	rs11118606-G	NR	1E-8		0.0182859	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
2270	chr1	220983016	220983017	rs11118606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	MARCH1	rs11118606-G	NR	2E-8		0.0178454	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
2270	chr1	220983401	220983402	rs17649913	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs17649913-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
2270	chr1	220986623	220986624	rs111997659	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q41	NR	rs111997659-T	0.013885999999999954	2E-8		0.0206542	[0.013-0.028] unit increase	Affymetrix [16582909] (imputed)	N
2271	chr1	220990085	220990086	rs11118610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	MARCH1	rs11118610-C	NR	6E-11		0.0185755	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
2271	chr1	220990085	220990086	rs11118610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	MARCH1	rs11118610-C	NR	7E-11		0.0184714	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
2271	chr1	220990085	220990086	rs11118610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	MARCH1	rs11118610-C	NR	3E-8		0.0159315	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
2271	chr1	220990085	220990086	rs11118610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	MARCH1	rs11118610-C	NR	2E-9		0.017342	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
2271	chr1	220990085	220990086	rs11118610	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	1q41	NR	rs11118610-A	0.5688	2E-7		0.0094	[0.0059-0.0129] unit increase	NR [~ 27400000] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q41	MARCH1	rs7514450-T	NR	1E-10		0.0184125	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	MARCH1	rs7514450-T	NR	1E-10		0.0184297	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	MARCH1	rs7514450-T	NR	2E-8		0.0161644	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	MARCH1	rs7514450-T	NR	2E-10		0.0182658	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs7514450-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2271	chr1	220991170	220991171	rs7514450	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q41	MARC1	rs7514450-T	0.4253	3E-13		0.0022	[0.0016-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2271	chr1	220998912	220998913	rs7544735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs7544735-G	NR	3E-7		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
2271	chr1	220998912	220998913	rs7544735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs7544735-G	NR	9E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2271	chr1	220998912	220998913	rs7544735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs7544735-G	NR	1E-7		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2271	chr1	220998912	220998913	rs7544735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q41	NR	rs7544735-G	0.72	2E-6	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2271	chr1	220999968	220999969	rs72736909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	1q41		rs72736909-C	0.933775	2E-8		0.0470123	[0.031-0.063] unit decrease	NR [11722792] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q41		rs61830291-C	NR	3E-13		0.0287	[0.021-0.036] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q41		rs61830291-C	NR	2E-12		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q41		rs61830291-C	NR	3E-18		0.0286	[0.022-0.035] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-295M18.6	rs61830291-C	NR	5E-8		0.0259614	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-295M18.6	rs61830291-C	NR	3E-8		0.0265898	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q41	RP11-295M18.2	rs61830291-C	0.096373	2E-10		0.023711637	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q41	RP11-295M18.2	rs61830291-C	0.096572	3E-18		0.032878622	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q41	RP11-295M18.2	rs61830291-C	0.096341	4E-16		0.030926317	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q41	RP11-295M18.2	rs61830291-C	0.096377	2E-13		0.027801849	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q41	RP11-295M18.2	rs61830291-C	0.096377	1E-14		0.029042125	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs61830291-A	0.905629	2E-15				Affymetrix, Illumina [17210439] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q41	NR	rs61830291-A	0.902983	2E-18		0.028279	[0.022-0.035] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q41	MARC1	rs61830291-A	0.904209	1E-17		0.0289356	[0.022-0.036] unit decrease	Affymetrix [NR] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q41	HLX	rs61830291-?	NR	9E-13		0.0316	[0.024-0.039] unit increase	Affymetrix [5701386] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q41	NR	rs61830291-C	0.09682000000000002	2E-8		0.0115462	[0.0075-0.0156] unit increase	Affymetrix [16585854] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q41	NR	rs61830291-C	0.09682000000000002	5E-9		0.0137832	[0.0091-0.0185] unit increase	Affymetrix [16585866] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs61830291-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2271	chr1	221001141	221001142	rs61830291	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q41	LINC01352	rs61830291-A	0.8991	1E-10		0.0036	[0.0024-0.0048] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2271	chr1	221001726	221001727	rs145990041	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q41	NR	rs145990041-A	0.985288	4E-8		0.0461262	[0.03-0.063] unit decrease	NR [NR]	N
2271	chr1	221008653	221008653	rs529511010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1q41		rs529511010-G,rs529511010-G	0.722264	4E-9		0.0275025	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
2271	chr1	221008653	221008653	rs529511010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1q41		rs529511010-G,rs529511010-G	0.722264	4E-9		0.0275025	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
2271	chr1	221010204	221010205	rs12073837	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	1q41	MOSC1	rs12073837-T	0.19	2E-6		1.39	[0.82-1.96] unit increase	Illumina [660740]	N
2271	chr1	221028507	221028508	rs11118620	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	1q41	LOC100129376	rs11118620-?	0.29	7E-6	(EA)	1.15	[0.98-1.35]	Affymetrix, Illumina [2478304] (imputed)	N
2271	chr1	221028583	221028584	rs2453237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs2453237-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2271	chr1	221029840	221029841	rs2807854	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1q41		rs2807854-T	0.326395	2E-8		0.0245715	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2271	chr1	221029840	221029841	rs2807854	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q41	HLX	rs2807854-T	0.328665	2E-13		0.0163014	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
2271	chr1	221032323	221032324	rs2784259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1q41		rs2784259-A	0.326397	5E-8		0.0240553	[0.015-0.033] unit decrease	NR [11722792] (imputed)	N
2271	chr1	221032323	221032324	rs2784259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q41	HLA-AS1	rs2784259-A	0.327763	3E-9		0.014092342	[0.0094-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221032880	221032881	rs4846335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	1q41		rs4846335-C	0.896246	3E-8		0.037596	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
2271	chr1	221038176	221038177	rs12037861	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	1q41	HLX-AS1	rs12037861-A	0.7041	3E-8		0.023078	[0.015-0.031] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
2271	chr1	221040859	221040860	rs114655291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs114655291-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2271	chr1	221041042	221041042	rs538332177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q41		rs538332177-GT	NR	2E-15		0.0228	[0.017-0.028] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2271	chr1	221045347	221045348	rs36079165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q41	HLA-AS1	rs36079165-A	0.678837	8E-17		0.019920189	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221047602	221047603	rs75865061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q41	NR	rs75865061-A	0.120513	3E-11		0.019335	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2271	chr1	221051565	221051566	rs41369048	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	1q41	HLA-AS1	rs41369048-G	0.1224	8E-9		0.03184433	[0.021-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2271	chr1	221051565	221051566	rs41369048	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	1q41	HLA-AS1	rs41369048-G	0.1224	7E-9		0.03186247	[0.021-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2271	chr1	221052789	221052790	rs796495740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q41	HLX	rs796495740-C	0.329037	8E-23		0.02345908	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221052789	221052790	rs796495740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q41	HLX	rs796495740-C	0.3296	1E-12		0.02709785	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2271	chr1	221052789	221052790	rs796495740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q41	HLX	rs796495740-C	0.3295	8E-13		0.02735354	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
2271	chr1	221052800	221052802	rs78219651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q41	NR	rs78219651-D	0.189531	9E-20		0.024474	[0.019-0.03] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2271	chr1	221052802	221052803	rs35700343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q41		rs35700343-C	NR	1E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2271	chr1	221053544	221053545	rs12141189	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q41	NR	rs12141189-T	0.754196	6E-21		0.0218773	[0.017-0.026] unit increase	NR [NR]	N
2271	chr1	221053544	221053545	rs12141189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs12141189-?	NR	4E-12				NR [~ 8900000] (imputed)	N
2271	chr1	221054760	221054761	rs17597773	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	1q41	HLX	rs17597773-C	NR	7E-9				NR [2501549] (imputed)	N
2271	chr1	221055462	221055463	rs2247213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q41	NR	rs2247213-G	0.670449	1E-45		0.01231	[0.011-0.014] unit increase	Affymetrix [16582909] (imputed)	N
2271	chr1	221055462	221055463	rs2247213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q41	NR	rs2247213-G	0.670464	1E-36		0.0146905	[0.012-0.017] unit increase	Affymetrix [16582621] (imputed)	N
2271	chr1	221055462	221055463	rs2247213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q41	NR	rs2247213-G	0.670449	1E-27		0.010628	[0.0087-0.0126] unit increase	Affymetrix [16582965] (imputed)	N
2271	chr1	221055462	221055463	rs2247213	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q41	NR	rs2247213-G	0.670464	6E-28		0.0136644	[0.011-0.016] unit increase	Affymetrix [16582614] (imputed)	N
2271	chr1	221056215	221056216	rs1317189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q41		rs1317189-C	NR	5E-13		0.0169	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	NR	1E-10		0.0197	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	NR	2E-11		0.0215	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	NR	6E-10		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	NR	3E-33		0.0366	[0.031-0.043] unit increase	Affymetrix [9000000] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q41	HLX	rs34180575-T	0.192222	6E-16		0.022547837	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q41	HLX	rs34180575-T	0.192207	6E-18		0.024117332	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	0.170595	2E-17				Affymetrix, Illumina [24649327] (imputed)	N
2271	chr1	221057172	221057173	rs34180575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs34180575-T	0.177091	6E-17				Affymetrix, Illumina [23114412] (imputed)	N
2271	chr1	221057661	221057662	rs3738182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q41	NR	rs3738182-A	0.193616	2E-19		0.020943	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2271	chr1	221057661	221057662	rs3738182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q41		rs3738182-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2271	chr1	221058845	221058846	rs11588625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q41	HLX	rs11588625-C	0.136622	2E-16		0.02650088	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221058845	221058846	rs11588625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q41		rs11588625-?	NR	2E-15				NR [~ 8900000] (imputed)	N
2271	chr1	221060392	221060393	rs2784250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q41		rs2784250-G	NR	5E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2271	chr1	221066372	221066373	rs2784255	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q41	HLX	rs2784255-C	0.485307353693024	1E-8		0.0030642	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
2271	chr1	221067885	221067886	rs41305100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs41305100-T	NR	3E-14		0.0384	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
2271	chr1	221091821	221091822	rs144013225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q41		rs144013225-C	NR	3E-15		0.0217	[0.016-0.027] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
2271	chr1	221092837	221092838	rs1414517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q41	NR	rs1414517-G	0.187298	1E-22		0.024977	[0.02-0.03] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2271	chr1	221094067	221094068	rs2807869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	HLX	rs2807869-A	NR	3E-8		0.0156691	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
2271	chr1	221094067	221094068	rs2807869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	HLX	rs2807869-A	NR	1E-10		0.0184233	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
2271	chr1	221094717	221094718	rs2484697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	HLX	rs2484697-A	NR	5E-9		0.0166468	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2271	chr1	221097629	221097630	rs77271869	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q41		rs77271869-T	0.943679	3E-8		0.0473497	[0.031-0.064] unit increase	NR [11722792] (imputed)	N
2271	chr1	221106303	221106304	rs59150958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs59150958-T	0.128175	2E-20				Affymetrix, Illumina [19872809] (imputed)	N
2271	chr1	221109293	221109296	rs150293444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q41		rs150293444-A	0.185864	5E-14		0.022030983	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2271	chr1	221111779	221111780	rs7542375	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q41	HLX	rs7542375-C	0.431	2E-6	(Total cysteine )	0.02	[NR] umol/L increase	Illumina [899892]	N
2271	chr1	221115394	221115395	rs2807875	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs2807875-G	NR	3E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2272	chr1	221135670	221135671	rs10495159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q41		rs10495159-G	NR	7E-16		0.0168	[0.013-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2272	chr1	221135960	221135961	rs10495160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	HLX	rs10495160-T	NR	2E-8		0.0289669	[0.019-0.039] unit increase	Affymetrix [321114] (imputed)	N
2272	chr1	221135960	221135961	rs10495160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs10495160-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
2272	chr1	221136641	221136642	rs1335927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q41		rs1335927-T	0.571798	2E-18		0.019801002	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2272	chr1	221136641	221136642	rs1335927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q41	intergenic	rs1335927-C	0.428234	8E-10		0.013900163	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
2272	chr1	221136671	221136672	rs10495161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q41		rs10495161-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2272	chr1	221138611	221138612	rs6678632	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q41	HLX	rs6678632-T	0.44	5E-13		0.47	[0.35-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2272	chr1	221138611	221138612	rs6678632	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q41	HLX	rs6678632-T	0.4278	3E-11		0.4477	[0.32-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2272	chr1	221140831	221140832	rs12022930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q41	NR	rs12022930-C	0.570622	1E-18		0.016709	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2272	chr1	221147665	221147666	rs2992649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q41	NR	rs2992649-G	0.449103	9E-21				Affymetrix, Illumina [23467995] (imputed)	N
2272	chr1	221147665	221147666	rs2992649	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs2992649-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
2272	chr1	221197093	221197094	rs61819230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs61819230-T	NR	4E-8		0.026735	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
2272	chr1	221197093	221197094	rs61819230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs61819230-T	NR	3E-9		0.0315821	[0.021-0.042] unit increase	Affymetrix [321114] (imputed)	N
2272	chr1	221197708	221197709	rs12039502	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 13)	4,680 European ancestry individuals	3,566 European ancestry individuals	1q41		rs12039502-C	0.302993617	2E-10				Illumina [7417619] (imputed)	N
2272	chr1	221204298	221204299	rs17009288	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	HLX	rs17009288-A	0.7061	4E-22		0.0251	[0.02-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
2272	chr1	221204298	221204299	rs17009288	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	HLX	rs17009288-A	0.7061	8E-15		0.02	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
2272	chr1	221204298	221204299	rs17009288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs17009288-?	NR	1E-30				NR [~ 8900000] (imputed)	N
2272	chr1	221204512	221204513	rs6696174	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	1q41		rs6696174-A	0.45	2E-10		0.029	[0.017-0.041] L decrease	Affymetrix [NR] (imputed)	N
2272	chr1	221204512	221204513	rs6696174	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	1q41		rs6696174-A	0.45	3E-8		0.026	L decrease	Affymetrix [NR] (imputed)	N
2272	chr1	221213996	221213997	rs10863578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q41		rs10863578-C	NR	1E-20		0.0124	[0.0099-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2272	chr1	221213996	221213997	rs10863578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q41		rs10863578-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2272	chr1	221229695	221229696	rs4142348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs4142348-T	NR	7E-12		0.0212695	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221258616	221258616	rs61187400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs61187400-G	NR	7E-9		0.0167062	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221258616	221258616	rs61187400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs61187400-G	NR	2E-13		0.0228991	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221270964	221270965	rs12123387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q41		rs12123387-T	0.139717	4E-9		0.019160505	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2273	chr1	221273157	221273158	rs7554672	28273873	Park YM	2017-03-05	Nutrients	Interaction between Single Nucleotide Polymorphism and Urinary Sodium, Potassium, and Sodium-Potassium Ratio on the Risk of Hypertension in Korean Adults.	Hypertension	8,839 Korean ancestry individuals.	NA	1q41	LOC101929750	rs7554672-?	0.589	2E-6		1.21		Affymetrix [1291657] (imputed)	N
2273	chr1	221280234	221280235	rs10218741	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1q41	HLX	rs10218741-G	0.410449	2E-8		0.034494594	[0.023-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
2273	chr1	221280234	221280235	rs10218741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs10218741-?	NR	7E-29				NR [~ 8900000] (imputed)	N
2273	chr1	221288312	221288313	rs75233715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs75233715-A	NR	2E-8		0.0305471	[0.02-0.041] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221290754	221290755	rs715300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs715300-T	NR	3E-18		0.0292483	[0.023-0.036] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221290754	221290755	rs715300	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs715300-?	NR	8E-29				Affymetrix [~ 8270000] (imputed)	N
2273	chr1	221293542	221293543	rs11118653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs11118653-C	NR	1E-10		0.0198458	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221307819	221307820	rs6657966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs6657966-C	NR	5E-8		0.0171348	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221309416	221309417	rs12127195	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	HLX	rs12127195-A	0.3148	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2273	chr1	221309416	221309417	rs12127195	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	1q41	HLX	rs12127195-A	0.3148	1E-6		0.0181	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2273	chr1	221309416	221309417	rs12127195	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	HLX	rs12127195-A	0.2972	8E-9	(EA)	0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2273	chr1	221309416	221309417	rs12127195	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q41	HLX	rs12127195-A	0.2972	3E-8	(EA, men)	0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2273	chr1	221310946	221310947	rs6686093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs6686093-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2273	chr1	221315910	221315910	rs755424234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs755424234-C	NR	2E-11		0.0229673	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221315910	221315910	rs755424234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs755424234-C	NR	2E-12		0.0241517	[0.017-0.031] unit increase	Affymetrix [127266] (imputed)	N
2273	chr1	221315910	221315910	rs755424234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs755424234-C	NR	4E-12		0.0235718	[0.017-0.03] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221317257	221317258	rs1935157	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs1935157-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
2273	chr1	221317257	221317258	rs1935157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q41		rs1935157-?	NR	9E-16				NR [~ 8900000] (imputed)	N
2273	chr1	221330514	221330515	rs12123182	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	1q41	NR	rs12123182-T	0.3009	1E-12		0.0138	[0.0099-0.0177] unit increase	NR [~ 27400000] (imputed)	N
2273	chr1	221343144	221343145	rs61819267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs61819267-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2273	chr1	221343144	221343145	rs61819267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs61819267-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
2273	chr1	221345741	221345742	rs1417922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q41	NR	rs1417922-G	0.586006	2E-10		0.011619	[0.008-0.0152] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2273	chr1	221352842	221352843	rs12032422	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs12032422-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs12126632-T	NR	5E-8		0.0226251	[0.014-0.031] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs12126632-T	NR	2E-8		0.0211998	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs12126632-T	NR	1E-8		0.023737	[0.016-0.032] unit increase	Affymetrix [127266] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs12126632-T	NR	1E-12		0.0268682	[0.019-0.034] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs12126632-T	NR	9E-15		0.0317117	[0.024-0.04] unit increase	Affymetrix [321114] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q41	RP11-453O22.1	rs12126632-T	NR	4E-10		0.0237539	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
2273	chr1	221357226	221357227	rs12126632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs12126632-T	NR	6E-11		0.0269195	[0.019-0.035] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221358795	221358796	rs9431431	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	1q41	RP11-453O22.1	rs9431431-G	0.706	2E-12		0.134	[0.097-0.171] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2273	chr1	221365848	221365849	rs6541181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs6541181-C	NR	2E-8		0.0181869	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
2273	chr1	221365848	221365849	rs6541181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	1q41	RP11-453O22.1	rs6541181-C	NR	4E-9		0.019098	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
2274	chr1	221414270	221414271	rs114305144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs114305144-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2274	chr1	221430961	221430962	rs12137833	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q41	NR	rs12137833-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
2274	chr1	221475623	221475624	rs115066827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q41	NR	rs115066827-A	NR	3E-10		0.0559	[0.038-0.073] unit increase	Affymetrix [9000000] (imputed)	N
2274	chr1	221475898	221475899	rs75849835	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	1q41	HLX, C1orf140	rs75849835-A	0.02	9E-8		0.2042	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
2274	chr1	221476975	221476976	rs4304588	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs4304588-?	NR	6E-39		0.026689	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	C1orf140	rs7527300-C	0.594918	2E-43		0.025859	[0.022-0.03] unit increase	NR [13737936] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs7527300-?	NR	6E-41				NR [~ 8900000] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs7527300-?	NR	1E-38		0.0266365	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	C1orf140	rs7527300-C	0.594172	1E-15	(women)	0.0367819	[0.028-0.046] unit increase	NR [17166351] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	C1orf140	rs7527300-C	0.593587	2E-19		0.0306738	[0.024-0.037] unit increase	NR [17166351] (imputed)	N
2274	chr1	221477743	221477744	rs7527300	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q41	C1orf140	rs7527300-C	0.592917	4E-6	(men)	0.0228547	[0.013-0.033] unit increase	NR [17166351] (imputed)	N
2275	chr1	221518255	221518256	rs151049317	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	1q41	C1orf140	rs151049317-?	NR	2E-8				Illumina [11329225] (imputed)	N
2275	chr1	221551538	221551539	rs12733856	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	1q41	LOC400804	rs12733856-A	0.382	3E-6	(AA)	1.56	[0.97-2.51]	Affymetrix [up to 2366858] (imputed)	N
2275	chr1	221556156	221556157	rs12029534	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q41		rs12029534-G	NR	2E-6		4.7113447	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
2275	chr1	221568737	221568738	rs34645974	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	1q41	NR	rs34645974-G		8E-6		0.1707	[0.096-0.245] SD units decrease	NR [10700000] (imputed)	N
2275	chr1	221617075	221617076	rs12032381	20971583	Ojwang JO	2010-10-22	J Hand Surg Am	Genome-wide association scan of Dupuytren's disease.	Dupuytren's disease	37 European ancestry cases, 36 European ancestry controls	NA	1q41	LOC100132626	rs12032381-C	0.083	6E-6		6.22	[2.37-16.31]	Illumina [251837]	N
2275	chr1	221617759	221617760	rs140309399	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		1q41	intergenic	rs140309399-T	0.0278846	6E-6		1.12214	[0.64-1.6] unit increase	Illumina [640625] (imputed)	N
2275	chr1	221628541	221628542	rs138464032	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1q41	LOC105372932	rs138464032-?		9E-6				Illumina [7405822] (imputed)	N
2275	chr1	221630554	221630555	rs6657854	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q41	C1orf140, DUSP10	rs6657854-A	0.72	1E-8	(EA)	19.89	[13.05-26.73] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
2275	chr1	221631937	221631938	rs12757436	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q41	C1orf140/DUSP10	rs12757436-A	0.3349	2E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
2275	chr1	221635206	221635207	rs12046746	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q41	C1orf140, DUSP10	rs12046746-C	0.72	1E-8	(EA)	19.81	[12.97-26.65] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
2275	chr1	221635206	221635207	rs12046746	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q41	C1orf140, DUSP10	rs12046746-C	0.71	1E-9		16.99	[11.48-22.5] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
2276	chr1	221694990	221694991	rs12137733	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q41	NR	rs12137733-C	NR	2E-8	(GEE model)	0.83305	[0.54-1.12] unit decrease	NR [NR] (imputed)	N
2276	chr1	221759455	221759456	rs957198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs957198-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2276	chr1	221761334	221761335	rs10779447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q41		rs10779447-?	NR	2E-18				NR [~ 8900000] (imputed)	N
2277	chr1	221831008	221831009	rs12568748	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	1q41		rs12568748-?	NR	9E-6	(mucinous_all)	1.9		Illumina [11595112] (imputed)	N
2277	chr1	221887902	221887903	rs72736544	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	1q41	NR	rs72736544-?	NR	2E-7		0.4818	[0.31-0.65] unit decrease	Illumina [at least 560000] (imputed)	N
2277	chr1	221894238	221894239	rs191465650	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q41	NR	rs191465650-?	NR	3E-6		1.01844	[0.59-1.45] unit increase	NR [13958389] (imputed)	N
2278	chr1	221910287	221910288	rs11118844	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	1q41	DUSP10	rs11118844-A	0.86	7E-6		1.49	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
2278	chr1	221910287	221910288	rs11118844	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	1q41	DUSP10	rs11118844-A	0.855	2E-6		1.46	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
2278	chr1	221939221	221939222	rs7551561	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q41	NR	rs7551561-?	NR	1E-7		0.0587	[0.037-0.08] unit decrease	Illumina [at least 560000] (imputed)	N
2278	chr1	221948868	221948869	rs12029988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q41		rs12029988-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2278	chr1	221957198	221957199	rs9441956	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q41	DUSP10	rs9441956-?	NR	2E-8		0.011435131	[0.0075-0.0154] unit increase	NR [7306098]	N
2278	chr1	221958188	221958189	rs4240927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q41		rs4240927-T	0.526694	2E-10		0.014154665	[0.0098-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
2278	chr1	221967816	221967817	rs4846724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q41		rs4846724-A	0.5347	3E-12		0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2278	chr1	221967816	221967817	rs4846724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q41	Intergenic	rs4846724-A	0.5347	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2278	chr1	221976038	221976039	rs35726538	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	1q41	RP11-191N8.2	rs35726538-G	0.02	1E-6		0.693	[0.41-0.97] unit increase	Illumina [NR] (imputed)	N
2279	chr1	222045445	222045446	rs6691170	20972440	Houlston RS	2010-10-24	Nat Genet	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	1q41	DUSP10	rs6691170-T	NR	1E-9		1.06	[1.03-1.09]	Illumina [up to 550000] (imputed)	N
2279	chr1	222049819	222049820	rs6658977	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	1q41	NR	rs6658977-T	NR	1E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
2279	chr1	222058197	222058198	rs6604683	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q41	NR	rs6604683-?	NR	6E-14				Affymetrix [NR]	N
2279	chr1	222061021	222061022	rs11118883	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	1q41	DUSP10	rs11118883-A	0.35	5E-6		1.12	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
2279	chr1	222061972	222061973	rs11577023	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q41	NR	rs11577023-T	0.6903	2E-13		0.0168366	[0.012-0.021] unit increase	NR [NR]	N
2279	chr1	222074507	222074508	rs6657194	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs6657194-C	0.544	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222074629	222074630	rs6673137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs6673137-A	0.541	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222075216	222075217	rs36040446	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs36040446-T	0.546	5E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222075458	222075459	rs11118885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118885-T	0.501	5E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222075613	222075614	rs12127506	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q41		rs12127506-C	0.68	9E-11				NR [NR] (imputed)	N
2279	chr1	222075613	222075614	rs12127506	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q41		rs12127506-C	0.68	8E-11		0.01	% increase	NR [NR] (imputed)	N
2279	chr1	222075661	222075662	rs11118886	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118886-C	0.546	5E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222075696	222075697	rs11118887	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118887-T	0.546	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222075724	222075725	rs11118888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118888-C	0.454	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222075801	222075802	rs11118889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118889-A	0.454	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222076416	222076417	rs6604685	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs6604685-T	0.454	4E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222076513	222076514	rs2378491	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs2378491-A	0.546	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222076746	222076747	rs2378492	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs2378492-T	0.546	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222076948	222076949	rs7534469	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs7534469-A	0.546	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222077082	222077083	rs4460649	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs4460649-C	0.546	4E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222078599	222078600	rs4457591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs4457591-T	0.498	9E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222079193	222079194	rs3924223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs3924223-A	0.543	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
2279	chr1	222083594	222083595	rs11118892	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q41	Intergenic	rs11118892-C	0.443	5E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
2279	chr1	222098689	222098690	rs12140498	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	1q41		rs12140498-T	NR	9E-9		1.1737089	NR	Affymetrix [7846216] (imputed)	N
2279	chr1	222112633	222112634	rs17011141	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	1q41	DUSP10	rs17011141-G	0.2087	6E-16		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
2279	chr1	222126883	222126884	rs2800847	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q41	NR	rs2800847-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
2279	chr1	222126883	222126884	rs2800847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q41		rs2800847-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2279	chr1	222146084	222146085	rs12022676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	1q41		rs12022676-A	0.282566469	2E-10		0.11656091	[0.081-0.152] unit increase	Illumina [13428297] (imputed)	N
2279	chr1	222146084	222146085	rs12022676	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	1q41		rs12022676-A	0.281894585	1E-10		1.1319561	[1.090259108-1.175247727]	Illumina [8919992] (imputed)	N
2279	chr1	222148342	222148343	rs12025420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	1q41		rs12025420-A	NR	3E-14		0.1069	[0.079-0.135] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
2279	chr1	222149258	222149259	rs141093369	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	1q41		rs141093369-?	NR	1E-8	(Colorectal polyp)	1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
2279	chr1	222149258	222149259	rs141093369	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	1q41		rs141093369-?	NR	2E-9		1.13	[1.08-1.18]	Illumina [NR] (imputed)	N
2279	chr1	222162372	222162373	rs6691195	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	1q41	NR	rs6691195-A	NR	3E-10		1.1160713	[1.08-1.15]	Illumina [6774630] (imputed)	N
2279	chr1	222164947	222164948	rs6687758	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	1q41	NR	rs6687758-G	0.222	1E-8	(EA)	1.0869565	[1.05-1.12]	Affymetrix, Illumina [12931465] (imputed)	N
2279	chr1	222164947	222164948	rs6687758	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	1q41	DUSP10	rs6687758-?	0.279	2E-8		1.1273957	[1.08-1.18]	Illumina [6774630] (imputed)	N
2279	chr1	222164947	222164948	rs6687758	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	1q41	NR	rs6687758-G	0.24	9E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [~ 4000000] (imputed)	N
2279	chr1	222164947	222164948	rs6687758	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	1q41	DUSP10	rs6687758-G	0.24	9E-9	(East Asian)	1.12	[1.08-1.17]	Affymetrix, Illumina [2400000] (imputed)	N
2279	chr1	222164947	222164948	rs6687758	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	1q41	intergenic	rs6687758-?	0.81	6E-8		1.27	[1.16-1.39]	Illumina [531451]	N
2279	chr1	222164947	222164948	rs6687758	20972440	Houlston RS	2010-10-24	Nat Genet	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	1q41	DUSP10	rs6687758-G	NR	2E-9		1.09	[1.06-1.12]	Illumina [up to 550000] (imputed)	N
2279	chr1	222165908	222165909	rs12126292	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q41	DUSP10, HHIPL2	rs12126292-G	0.12	7E-11		1.09	[1.07-1.1]	Illumina [at least 560000] (imputed)	N
2279	chr1	222165908	222165909	rs12126292	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	1q41	DUSP10, HHIPL2	rs12126292-?	NR	7E-11		1.0869565	[1.06-1.11]	Illumina [13757430] (imputed)	N
2280	chr1	222168433	222168434	rs12125383	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	1q41	DUSP10	rs12125383-?	NR	5E-8		1.28		Illumina [6419662] (imputed)	N
2280	chr1	222168433	222168434	rs12125383	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	1q41	DUSP10	rs12125383-?		5E-8				Illumina [6419662] (imputed)	N
2280	chr1	222194879	222194880	rs12121134	34184781	O'Connor E	2021-06-29	Ann Neurol	Genome Wide Association Study Identifies Risk Loci For Cluster Headache.	Cluster headache	1,443 European ancestry cases, 6,748 European ancestry controls	NA	1q41	LINC01705, DUSP10	rs12121134-T	0.19	2E-8		1.36	[1.22-1.52]	Illumina [NR] (imputed)	N
2280	chr1	222195001	222195002	rs2378497	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	1q41	DUSP10	rs2378497-G	0.08	4E-6	(AA)	0.33	[0.19-0.47] unit increase	Illumina [up to 905285]	N
2280	chr1	222245257	222245258	rs10863681	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	1q41	intergenic	rs10863681-G		6E-6		0.2262	unit increase	Illumina [5767231] (imputed)	N
2280	chr1	222251088	222251089	rs10863683	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Keloid	812 Japanese ancestry cases, 211,641 Japanese ancestry controls	NA	1q41		rs10863683-G	NR	5E-19		0.59714055	[0.53316120084004-0.668797472879522]	Illumina [8919992] (imputed)	N
2280	chr1	222267442	222267443	rs11293015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	668 European ancestry cases, 481,244 European ancestry controls, 1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	1q41		rs11293015-G	NR	4E-26		0.4149	[0.34-0.49] unit decrease	Affymetrix, Illumina [25844469] (imputed)	N
2280	chr1	222267442	222267443	rs11293015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	1q41		rs11293015-G	0.713261016	1E-24		0.51871675	[0.42-0.62] unit decrease	Illumina [13429980] (imputed)	N
2280	chr1	222271766	222271767	rs873549	20711176	Nakashima M	2010-08-15	Nat Genet	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	1q41	intergenic	rs873549-C	0.28	6E-23		1.77	[1.58-1.99]	Illumina [452038]	N
2280	chr1	222273867	222273868	rs2378519	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Keloid	812 Japanese ancestry cases, 211,641 Japanese ancestry controls	NA	1q41		rs2378519-A	0.713371443	7E-27		0.53955257	[0.482090716-0.603863437]	Illumina [8919992] (imputed)	N
2281	chr1	222397755	222397756	rs143805958	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	1q41	NR	rs143805958-G	0.9815	6E-9		1345.21	[892.77-1797.65] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
2281	chr1	222424901	222424902	rs158729	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	1q41	QRSL1P2	rs158729-G	0.99	6E-6	(Mean vigilance)	0.6528	[0.37-0.94] unit increase	Affymetrix [8042262] (imputed)	N
2282	chr1	222494370	222494371	rs35094408	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q41	NR	rs35094408-?	NR	6E-6		4.533	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2283	chr1	222644511	222644512	rs146649664	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	1q41		rs146649664-C	0.847011	9E-6		0.0172581	[0.0097-0.0248] unit increase	Illumina [13900000] (imputed)	N
2283	chr1	222666444	222666445	rs67416193	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1q41		rs67416193-G	0.678842	1E-6		0.00971533	[0.0058-0.0137] unit increase	Illumina [13900000] (imputed)	N
2284	chr1	222727128	222727132	rs147825881	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1q41	TAF1A	rs147825881-CCTCT	0.8839	2E-6		0.1193	[0.07-0.168] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2284	chr1	222762708	222762709	rs17464857	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Verbal intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	1q41	NR	rs17464857-G	NR	6E-6		2.82	[1.60-4.05] unit increase	Illumina [2141747] (imputed)	N
2284	chr1	222764228	222764229	rs34123076	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q41	NR	rs34123076-?	NR	3E-6		4.681	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2284	chr1	222772593	222772594	rs2936045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1q41		rs2936045-G	NR	8E-9		0.0342	[0.023-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2284	chr1	222775656	222775657	rs3002131	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	1q41	NR	rs3002131-G		5E-6		0.1182	[0.067-0.169] SD units decrease	NR [10700000] (imputed)	N
2284	chr1	222785582	222785582	rs199527677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	1q41		rs199527677-GA	NR	2E-12		0.0638	[0.046-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2284	chr1	222786031	222786032	rs1909196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1q41		rs1909196-C	NR	3E-16		0.0673	[0.051-0.083] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
2284	chr1	222788061	222788062	rs3002142	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	1q41	intergenic	rs3002142-G	0.145640074211503	7E-6		0.050391905	[0.028-0.072] unit decrease	Illumina [1632371] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q41		rs2378584-G	0.522980324	6E-11		0.07808479	[0.055-0.101] unit increase	Illumina [13427711] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q41		rs2378584-G	NR	2E-14		0.0664	[0.049-0.083] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q41		rs2378584-G	NR	6E-35		0.1138	[0.096-0.132] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	1q41		rs2378584-G	NR	5E-8		0.0575	[0.037-0.078] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	1q41		rs2378584-G	0.527266406	2E-13		0.062228292	[0.046-0.079] unit increase	Illumina [13429980] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1q41		rs2378584-G	NR	2E-8		0.0288	[0.019-0.039] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2284	chr1	222793631	222793632	rs2378584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	1q41		rs2378584-G	0.522825567	2E-10		0.08466134	[0.058-0.111] unit increase	Illumina [13426705] (imputed)	N
2284	chr1	222797613	222797614	rs4846384	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	1q41	MIA3	rs4846384-G	0.691031	3E-15		1.1	[1.07-1.12]	NR [10903881] (imputed)	N
2284	chr1	222811406	222811407	rs35700460	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	1q41	MIA3	rs35700460-G	0.67406	2E-24		1.09	[1.07-1.11]	NR [8126035] (imputed)	N
2284	chr1	222811406	222811407	rs35700460	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1q41	MIA3	rs35700460-G	0.65	2E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [8600000] (imputed)	N
2284	chr1	222814441	222814442	rs2133189	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	1q41		rs2133189-?	NR	8E-9		0.0775	[0.056-0.099] unit increase	NR [NR] (imputed)	N
2284	chr1	222814441	222814442	rs2133189	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	1q41	MIA3	rs2133189-T	0.286	2E-11				Affymetrix [28000000] (imputed)	N
2285	chr1	222822998	222822999	rs28709375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	1q41		rs28709375-G	0.539555103	8E-23		0.13163711	[0.11-0.16] unit increase	Illumina [13427135] (imputed)	N
2285	chr1	222822998	222822999	rs28709375	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	1q41	MIA3	rs28709375-?	NR	1E-22		0.0969412	[0.078-0.116] unit increase	Illumina [19707525] (imputed)	N
2285	chr1	222823528	222823529	rs17465637	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q41	MIA3	rs17465637-A	0.2903	8E-31		0.0817	[0.068-0.096] unit decrease	NR [8041861] (imputed)	N
2285	chr1	222823528	222823529	rs17465637	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	1q41	MIA3	rs17465637-C	0.74	1E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2285	chr1	222823528	222823529	rs17465637	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	1q41	MIA3	rs17465637-C	0.72	1E-9		1.14	[1.10-1.19]	Affymetrix [~ 2500000] (imputed)	N
2285	chr1	222823528	222823529	rs17465637	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	1q41	MIA3	rs17465637-C	0.71	1E-6		1.2	[1.12-1.30]	Affymetrix [377857]	N
2285	chr1	222823742	222823743	rs67180937	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	1q41	MIA3	rs67180937-G	0.54	3E-10		1.13	[1.09-1.17]	Illumina [5932413] (imputed)	N
2285	chr1	222823742	222823743	rs67180937	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	1q41	MIA3	rs67180937-G	0.684	9E-14		1.07	[1.05-1.09]	Affymetrix [9149595] (imputed)	N
2285	chr1	222823742	222823743	rs67180937	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	1q41	MIA3	rs67180937-G	0.663052	1E-12		1.08	[1.06- 1.11]	Affymetrix, Illumina [8600000] (imputed)	N
2285	chr1	222829549	222829550	rs35158675	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q41	MIA3	rs35158675-?	NR	5E-48		0.0775764	[0.067-0.088] unit increase	Illumina [4804024] (imputed)	N
2285	chr1	222829549	222829550	rs35158675	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	1q41	MIA3	rs35158675-A	0.6821	6E-28		0.0699	[0.057-0.082] unit increase	Affymetrix [at least 7947838] (imputed)	N
2285	chr1	222835929	222835930	rs3008629	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	1q41	MIA3	rs3008629-T	0.8	6E-12		1.07	[1.04-1.10]	Illumina [5167567] (imputed)	N
2285	chr1	222837938	222837939	rs17465982	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q41	AIDA, MIA3	rs17465982-A	0.682	9E-28		0.079	[0.065-0.093] unit increase	Affymetrix [7947838] (imputed)	N
2285	chr1	222846881	222846882	rs12138316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q41		rs12138316-?	NR	9E-8				NR [~ 8900000] (imputed)	N
2285	chr1	222923350	222923351	rs6683071	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	1q41	FAM177B	rs6683071-?	0.2016	4E-6	(PC1)			Illumina [475971]	N
2285	chr1	222940754	222940755	rs61826465	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q41	intergenic	rs61826465-T	0.7472	6E-11		0.0141	[0.0098-0.0184] unit increase	Affymetrix [18391927] (imputed)	N
2287	chr1	223087893	223087894	rs17163564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q41		rs17163564-G	NR	2E-10		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2287	chr1	223105398	223105399	rs17536653	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1066 abundance in stool	5,959 Finnish ancestry individuals	NA	1q41		rs17536653-T	0.0141414	3E-8		0.100294	[0.065-0.136] unit increase	Illumina [7980478] (imputed)	N
2287	chr1	223109933	223109934	rs2971996	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	1q41	NR	rs2971996-G	0.1623	4E-6		0.1896	[0.11-0.27] unit decrease	Illumina [10677593] (imputed)	N
2287	chr1	223113808	223113809	rs34701716	32627186	Man-Choi Ho A	2020-07-05	Clin Pharmacol Ther	Mood Stabilizing Antiepileptic Treatment Response in Bipolar Disorder: A Genome-Wide Association Study.	Response to antiepileptic mood-stabilizing treatment in bipolar disorder	199 European ancestry cases	NA	1q41	DISP1	rs34701716-C	0.14	2E-6		1.8	NR unit increase	Illumina [7368687] (imputed)	N
2287	chr1	223178025	223178026	rs144673025	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	1q41		rs144673025-?	NR	2E-13		0.0626112	[0.045-0.081] unit decrease	NR [9800000] (imputed)	N
2287	chr1	223178025	223178026	rs144673025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q41		rs144673025-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2287	chr1	223184620	223184621	rs2609352	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q41	DISP1	rs2609352-C	0.678043	5E-13		0.0141652	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
2287	chr1	223184620	223184621	rs2609352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q41		rs2609352-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2287	chr1	223184620	223184621	rs2609352	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q41		rs2609352-?	NR	3E-14		0.0154503	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
2288	chr1	223231656	223231657	rs113292043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q41		rs113292043-T	NR	1E-13		0.0342	[0.025-0.043] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2288	chr1	223231656	223231657	rs113292043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q41	intergenic	rs113292043-T	0.066591	2E-11		0.029557139	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2288	chr1	223231656	223231657	rs113292043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q41	NR	rs113292043-T	0.065718	5E-11		0.024784	[0.017-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2288	chr1	223285199	223285200	rs5744168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q41	TLR5	rs5744168-A	0.065479	1E-13		0.033019714	[0.024-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
2291	chr1	223679963	223679964	rs117721752	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q41	Intergenic	rs117721752-?		9E-6		1.1	[1.05-1.14]	Illumina [7645193] (imputed)	N
2292	chr1	223842403	223842404	rs6687907	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	1q41	NR	rs6687907-A	0.0151	4E-7		0.7086	[0.43-0.98] unit decrease	Illumina [NR] (imputed)	N
2293	chr1	223872050	223872051	rs12137025	28002826	D'Adamo CR	2016-12-22	J Nutrigenet Nutrigenomics	The CAPN2/CAPN8 Locus on Chromosome 1q Is Associated with Variation in Serum Alpha-Carotene Concentrations.	Carotenoid levels (alpha-carotene)	433 Old Order Amish individuals	NA	1q41	CAPN8, CAPN2	rs12137025-C	0.07	4E-8		0.19	[0.13-0.25] ?mol/L increase	Affymetrix [2193082] (imputed)	N
2293	chr1	223900594	223900595	rs373214284	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q41	CAPN2	rs373214284-T	0.007	3E-15	(Calpain-2 catalytic subunit, CAPN2.14684.17.3)	1.22	[0.93-1.51] unit decrease	Affymetrix [10572788] (imputed)	N
2293	chr1	223905832	223905833	rs12080565	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	1q41	CAPN2	rs12080565-T	0.25	2E-6	(female)	0.708	[0.42-0.99] unit increase	Illumina [6380737] (imputed)	N
2293	chr1	223906420	223906421	rs6683379	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Waist circumference	4,659 Korean ancestry females	5,273 Korean ancestry females	1q41	CAPN2	rs6683379-A	0.47795	8E-6		0.6469	[0.36-0.93] unit decrease	Affymetrix [NR] (imputed)	N
2293	chr1	223906826	223906827	rs7539624	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q41	NR	rs7539624-A	NR	8E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
2293	chr1	223920444	223920445	rs140084787	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	1q41	CAPN2	rs140084787-C	0.982	6E-6		3.25	[1.95-5.41]	Illumina [8129524] (imputed)	N
2293	chr1	223954530	223954531	rs28370157	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	1q41		rs28370157-C	NR	2E-6		5.12689		Affymetrix, Illumina [62056310] (imputed)	N
2293	chr1	223960391	223960392	rs12038299	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q41	CAPN2	rs12038299-G	0.70953125	3E-7	(CAPN2, 14684_17_3)	0.13799155	[0.085-0.191] unit increase	Illumina [> 1000000] (imputed)	N
2293	chr1	223961181	223961182	rs61824003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q41		rs61824003-A	0.09	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
2293	chr1	223961181	223961182	rs61824003	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q41	NR	rs61824003-A	0.0975	6E-10				NR [9056863] (imputed)	N
2293	chr1	223977518	223977519	rs12723025	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	1q41	TP53BP2	rs12723025-?	NR	9E-6		0.56	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
2293	chr1	224000023	224000024	rs6691315	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q41		rs6691315-A	0.09	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
2294	chr1	224044283	224044284	rs12730520	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q41	TP53BP2	rs12730520-C	0.758821	7E-17		0.00498978	[0.0038-0.0062] unit increase	Affymetrix [13995440] (imputed)	N
2294	chr1	224051438	224051439	rs6604731	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q41	NA	rs6604731-T	0.2997	3E-9		0.0116	[0.0079-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
2294	chr1	224066795	224066796	rs11801971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q41		rs11801971-T	NR	4E-17		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2295	chr1	224250053	224250054	rs34942101	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1q42.11	LOC105373061	rs34942101-?		6E-6				Illumina [7405822] (imputed)	N
2295	chr1	224256347	224256348	rs10916248	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	1q42.11	FBX028	rs10916248-A	0.8	5E-6	(Sulfonylurea Hypoglycemic agents)			Affymetrix, Illumina [~ 2500000] (imputed)	N
2296	chr1	224266513	224266514	rs1935891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q42.11		rs1935891-T	0.517066	1E-12		0.01577939	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2296	chr1	224289960	224289960	rs564403008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q42.11		rs564403008-TAAAAAAAAAAAA	NR	4E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2296	chr1	224289960	224289960	rs564403008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.11		rs564403008-TAAAAAAAAAAAA	0.714605	1E-9		0.0138399	[0.0093-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
2296	chr1	224289960	224289960	rs564403008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q42.11	NR	rs564403008-I	0.714275	1E-12		0.016261	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2296	chr1	224290805	224290806	rs11808787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q42.11	RN7SKP49	rs11808787-G	0.598827	6E-10		0.014014739	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
2296	chr1	224294869	224294870	rs10916301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q42.11		rs10916301-A	NR	3E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2296	chr1	224305485	224305486	rs2048997	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1q42.11	FBXO28	rs2048997-T	0.3998	2E-6		0.2165	[0.13-0.31] unit increase	NR [NR] (imputed)	N
2296	chr1	224305485	224305486	rs2048997	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	1q42.11	FBXO28	rs2048997-T	0.3987	7E-6		0.1973	[0.11-0.28] unit increase	NR [NR] (imputed)	N
2296	chr1	224305485	224305486	rs2048997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.11	NR	rs2048997-T	0.422362	1E-11				Affymetrix, Illumina [24246363] (imputed)	N
2296	chr1	224310782	224310782	rs3835628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q42.11		rs3835628-TA	NR	5E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2296	chr1	224341348	224341349	rs113737900	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q42.11	NR	rs113737900-?	NR	3E-6		12.714	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2296	chr1	224355700	224355701	rs12076788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.11		rs12076788-A	0.593843	1E-15		0.017911464	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2296	chr1	224360699	224360700	rs2051105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.11	NR	rs2051105-G	0.4504	2E-18				Affymetrix, Illumina [17210439] (imputed)	N
2296	chr1	224360699	224360700	rs2051105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q42.11	NR	rs2051105-G	0.443132	4E-19		0.017221	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2296	chr1	224367635	224367636	rs6673347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.11	DEGS1	rs6673347-C	0.276707	1E-12		0.017421462	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2296	chr1	224367635	224367636	rs6673347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q42.11		rs6673347-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2297	chr1	224396328	224396329	rs4653568	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	1q42.11	NR	rs4653568-?	NR	2E-10	(N24S19 ratio)	0.29	[0.2-0.38] unit increase	Illumina [5280459] (imputed)	N
2297	chr1	224405487	224405487	rs61005944	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	1q42.11	NR	rs61005944-CT	0.22	1E-6		1.77	[1.41-2.23]	Illumina [17125421] (imputed)	N
2297	chr1	224451837	224451838	rs12117480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q42.11	NVL	rs12117480-A	0.039504	3E-10		0.036525767	[0.025-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2298	chr1	224537654	224537655	rs12751807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.11		rs12751807-T	0.190143	1E-11		0.019609846	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224537654	224537655	rs12751807	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q42.11	CNIH3	rs12751807-?	NR	1E-9		0.0202	[0.014-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
2298	chr1	224538939	224538940	rs11579964	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1q42.11	NVL, CNIH4	rs11579964-?		8E-6	(African American)	0.262103	[0.15-0.38] unit increase	Illumina [13620258] (imputed)	N
2298	chr1	224538939	224538940	rs11579964	21042317	Wray NR	2010-11-02	Mol Psychiatry	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	1q42.11	CNIH4, NVL, WDR26	rs11579964-C	0.84	4E-6		1.19	[NR]	Affymetrix, Illumina [1251157] (imputed)	N
2298	chr1	224544528	224544529	rs7517754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1q42.11		rs7517754-G	NR	2E-8		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
2298	chr1	224544745	224544746	rs56105022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q42.11		rs56105022-A	NR	2E-8		0.036	[0.023-0.049] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2298	chr1	224544745	224544746	rs56105022	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q42.11	CNIH4	rs56105022-G	0.96422	4E-10		0.0338754	[0.023-0.044] unit increase	Affymetrix [NR] (imputed)	N
2298	chr1	224544745	224544746	rs56105022	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q42.11	CNIH4	rs56105022-G	0.964203	1E-11		0.0378328	[0.027-0.049] unit increase	Affymetrix [NR] (imputed)	N
2298	chr1	224549787	224549787	rs35913393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q42.11	CNIH4	rs35913393-AT	0.781404	1E-14		0.021453612	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224549787	224549787	rs35913393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q42.11	CNIH4	rs35913393-AT	0.781407	1E-10		0.017980987	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224549787	224549787	rs35913393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q42.11	CNIH4	rs35913393-AT	0.781424	5E-12		0.019205347	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224549787	224549787	rs35913393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q42.11	CNIH4	rs35913393-AT	0.78143	2E-9		0.016724357	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224559935	224559936	rs6675858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q42.11	NR	rs6675858-T	NR	5E-12		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2298	chr1	224559935	224559936	rs6675858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q42.11	NR	rs6675858-T	NR	2E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2298	chr1	224559935	224559936	rs6675858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.11	NR	rs6675858-T	0.172076	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
2298	chr1	224559935	224559936	rs6675858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q42.11	NR	rs6675858-T	0.214491	7E-13		0.016875	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2298	chr1	224559935	224559936	rs6675858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.11		rs6675858-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2298	chr1	224570424	224570425	rs10916606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.11		rs10916606-?	NR	2E-29				NR [~ 8900000] (imputed)	N
2298	chr1	224582207	224582208	rs34687215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q42.11	WDR26	rs34687215-C	0.2351	4E-9		0.02575367	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
2298	chr1	224597983	224597984	rs10707541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q42.12		rs10707541-C	NR	7E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2298	chr1	224597983	224597984	rs10707541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q42.12	NR	rs10707541-C	NR	1E-10		0.0181	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2298	chr1	224600265	224600266	rs6675269	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.12	NR	rs6675269-?	NR	4E-7				Affymetrix [NR]	N
2298	chr1	224602173	224602173	rs145934561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q42.12		rs145934561-CATTTTAATCAGAATA	NR	7E-19		0.0269	[0.021-0.033] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2298	chr1	224602173	224602173	rs145934561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q42.12		rs145934561-CATTTTAATCAGAATA	NR	2E-19		0.0272	[0.021-0.033] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2298	chr1	224610906	224610907	rs2897048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q42.12		rs2897048-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2298	chr1	224614624	224614625	rs28434172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q42.12	WDR26	rs28434172-T	0.207644	4E-10		0.017140018	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2298	chr1	224614624	224614625	rs28434172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q42.12		rs28434172-?	NR	2E-21				NR [~ 8900000] (imputed)	N
2298	chr1	224616444	224616444	rs11452219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA		WDR26	rs11452219-CA	0.220098	3E-13		0.02027655	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2298	chr1	224625333	224625334	rs12129540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.12	NR	rs12129540-T	NR	8E-10		0.0383	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
2298	chr1	224633914	224633915	rs139671569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q42.12		rs139671569-G	NR	4E-21		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2298	chr1	224637069	224637070	rs10916617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.12	CNIH3	rs10916617-T	0.211708	8E-25		0.027754005	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224637789	224637790	rs35571080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.12	CNIH3	rs35571080-C	0.211733	4E-24		0.027299713	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224637789	224637790	rs35571080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q42.12	NR	rs35571080-C	0.212693	1E-28		0.024903	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2298	chr1	224637789	224637790	rs35571080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q42.12	NR	rs35571080-C	0.212152	1E-25		0.024539	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2298	chr1	224648893	224648894	rs35767322	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1q42.12		rs35767322-G	0.769	2E-13				Affymetrix [10369434] (imputed)	N
2298	chr1	224651781	224651782	rs7365151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q42.12	CNIH3	rs7365151-T	0.786047	5E-12		0.018680595	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2298	chr1	224653596	224653597	rs12062871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs12062871-G	0.185431	5E-27				Affymetrix, Illumina [24649327] (imputed)	N
2298	chr1	224653596	224653597	rs12062871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs12062871-T	0.779785	1E-12				Affymetrix, Illumina [22063850] (imputed)	N
2298	chr1	224653596	224653597	rs12062871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q42.12	NR	rs12062871-T	0.784246	2E-13		0.016815	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2298	chr1	224657091	224657092	rs7536608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs7536608-A	0.189166	7E-25				Affymetrix, Illumina [23114412] (imputed)	N
2299	chr1	224662702	224662703	rs34791963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q42.12	CNIH3	rs34791963-C	0.252363	2E-10		0.016276669	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2299	chr1	224706891	224706892	rs34119581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.12		rs34119581-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2300	chr1	224822481	224822482	rs10799590	26239289	Nelson EC	2015-08-04	Mol Psychiatry	Evidence of CNIH3 involvement in opioid dependence.	Opioid dependence	1,167 European ancestry opioid-dependent daily injector cases, 161 European ancestry opioid misusers (impeded progression) controls	833 European ancestry opioid-dependent daily injector cases, 476  European ancestry opioid misusers (impeded progression) controls	1q42.12	CNIH3	rs10799590-G	0.49	4E-9		1.56	[1.35-1.82]	Illumina [470296]	N
2300	chr1	224860442	224860443	rs12133496	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	1q42.12	CNIH3	rs12133496-G	0.20	6E-6	(male)	0.541	[0.31-0.77] unit decrease	Illumina [6380737] (imputed)	N
2300	chr1	224880805	224880806	rs16851979	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.12	NR	rs16851979-A	0.0122	6E-10	(AGXT)	8.766	NR unit increase	Illumina [1671387] (imputed)	N
2300	chr1	224897490	224897491	rs72761829	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	1q42.12	NR	rs72761829-?	NR	4E-6		1.1586424	[1.09-1.23]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2300	chr1	224912725	224912726	rs2002371	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	1q42.12	CNIH3	rs2002371-T	NR	5E-6		1.07	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2301	chr1	224998831	224998832	rs12086567	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.12	NR	rs12086567-?	NR	1E-6				Affymetrix [NR]	N
2302	chr1	225073983	225073984	rs182399179	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	1q42.12	NR	rs182399179-?	NR	3E-6		0.8763	[0.52-1.23] unit decrease	Illumina [at least 560000] (imputed)	N
2302	chr1	225156456	225156457	rs16858926	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	1q42.12	DNAH14	rs16858926-A	0.28	3E-6		0.136	[0.079-0.193] unit increase	Illumina [6380737] (imputed)	N
2303	chr1	225280477	225280478	rs116524503	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		DNAH14	rs116524503-?	NR	6E-9	(female)	0.330185	[NR] unit increase	Affymetrix [NR] (imputed)	N
2304	chr1	225369772	225369773	rs114628023	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH14	rs114628023-?	NR	3E-13		2.42744	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2305	chr1	225558488	225558489	rs12729445	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	1q42.12	DNAH14	rs12729445-T	0.459179	3E-9		5.94	z score increase	NR [10847151] (imputed)	N
2305	chr1	225561345	225561346	rs7518221	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q42.12	DNAH14	rs7518221-T	0.352695	3E-8		0.00795352	[0.0051-0.0108] unit increase	Affymetrix [12370749]	N
2305	chr1	225561345	225561346	rs7518221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q42.12		rs7518221-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2305	chr1	225562384	225562385	rs10915816	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.12	NR	rs10915816-?	NR	9E-8				Affymetrix [NR]	N
2305	chr1	225563464	225563464	rs397737104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q42.12		rs397737104-CT	NR	2E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2305	chr1	225566787	225566788	rs116289082	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	1q42.12	DNAH14	rs116289082-?	NR	9E-6		1.21	[1.12-1.31]	Affymetrix, Illumina [39235000] (imputed)	N
2306	chr1	225587928	225587929	rs4529677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q42.12	Intergenic	rs4529677-G	0.5149	3E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2306	chr1	225588375	225588376	rs9783086	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q42.12		rs9783086-T	0.835	1E-9		0.09	[-0.12--0.06] % decrease	Affymetrix [NR] (imputed)	N
2306	chr1	225588375	225588376	rs9783086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.12	DNAH14, LBR	rs9783086-C	0.163843	5E-10		0.018489363	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2306	chr1	225588375	225588376	rs9783086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.12	DNAH14, LBR	rs9783086-C	0.163897	2E-12		0.0225985	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2306	chr1	225588375	225588376	rs9783086	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs9783086-C	0.148448	7E-23				Affymetrix, Illumina [24246363] (imputed)	N
2306	chr1	225589472	225589473	rs7406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.12		rs7406-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2306	chr1	225590674	225590675	rs16844841	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q42.12	NR	rs16844841-C	0.0583146565158979	4E-6	(IGP11)	0.3163	[0.18-0.45] unit increase	Illumina [~ 2500000] (imputed)	N
2306	chr1	225592926	225592927	rs16844846	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q42.12	NR	rs16844846-G	0.0584601113241195	4E-6	(IGP61)	0.3154	[0.18-0.45] unit decrease	Illumina [~ 2500000] (imputed)	N
2306	chr1	225592926	225592927	rs16844846	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q42.12	NR	rs16844846-G	0.0583315441465594	6E-6	(IGP58)	0.311	[0.18-0.45] unit decrease	Illumina [~ 2500000] (imputed)	N
2306	chr1	225595689	225595690	rs4653635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q42.12	NR	rs4653635-G	0.836917	2E-25		0.026007	[0.021-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2306	chr1	225595689	225595690	rs4653635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs4653635-G	0.851251	4E-13				Affymetrix, Illumina [20825802] (imputed)	N
2306	chr1	225595689	225595690	rs4653635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q42.12	NR	rs4653635-G	0.836222	7E-15		0.02066	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2306	chr1	225598674	225598675	rs6660819	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1q42.12	LBR	rs6660819-?		2E-6	(EA)	0.29744157	[0.17-0.42] unit decrease	Illumina [13620258] (imputed)	N
2306	chr1	225598674	225598675	rs6660819	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1q42.12	LBR	rs6660819-?		2E-6	(African American)	0.29744157	[0.17-0.42] unit decrease	Illumina [13620258] (imputed)	N
2306	chr1	225640815	225640816	rs55689260	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q42.12	NR	rs55689260-?	NR	3E-8				Illumina [7760689] (imputed)	N
2306	chr1	225668523	225668524	rs10915840	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q42.12	NR	rs10915840-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2306	chr1	225682184	225682185	rs1764346	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q42.12	NR	rs1764346-T	NR	1E-6	(GEE model)	0.72017	[0.43-1.01] unit decrease	NR [NR] (imputed)	N
2307	chr1	225736841	225736842	rs111701809	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1q42.12	NR	rs111701809-?	NR	6E-6		0.266554	[0.15-0.38] unit decrease	NR [13958389] (imputed)	N
2307	chr1	225781229	225781230	rs17502858	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	1q42.12	NR	rs17502858-A	NR	5E-8		5.468	z score increase	Affymetrix [10847151] (imputed)	N
2308	chr1	225860930	225860931	rs4653650	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	1q42.12	NR	rs4653650-T	NR	8E-6		0.019931441	[0.011-0.029] unit increase	Illumina [NR] (imputed)	N
2308	chr1	225872357	225872358	rs1578522	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q42.12	ENAH	rs1578522-A	0.698552	4E-21		0.00526442	[0.0042-0.0064] unit decrease	Affymetrix [13995440] (imputed)	N
2308	chr1	225882158	225882159	rs2657560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q42.12		rs2657560-G	NR	7E-18		0.0174	[0.013-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2308	chr1	225883377	225883378	rs17569722	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.12		rs17569722-?	NR	4E-8				NR [NR]	N
2308	chr1	225887953	225887954	rs61850655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q42.12	NR	rs61850655-T	0.116191	9E-22		0.027853	[0.022-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2308	chr1	225892573	225892574	rs4653424	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.12		rs4653424-?	NR	4E-8				NR [NR]	N
2308	chr1	225893400	225893401	rs4653425	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	1q42.12	NR	rs4653425-T	0.133	5E-6		0.023113705	[0.013-0.033] unit increase	Affymetrix [up to 6544775] (imputed)	N
2308	chr1	225895095	225895096	rs61850657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs61850657-A	0.125102	3E-20				Affymetrix, Illumina [24649327] (imputed)	N
2308	chr1	225895805	225895806	rs2615061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.12	RP11-145A3.1	rs2615061-A	0.116289	3E-17		0.029116793	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225895805	225895806	rs2615061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.12	RP11-145A3.1	rs2615061-A	0.116311	3E-16		0.02811306	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225895805	225895806	rs2615061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q42.12	NR	rs2615061-A	0.117457	4E-22		0.027637	[0.022-0.033] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2308	chr1	225895805	225895806	rs2615061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q42.12		rs2615061-?	NR	8E-14				NR [~ 8900000] (imputed)	N
2308	chr1	225895805	225895806	rs2615061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q42.12	RP11-145A3.1	rs2615061-A	0.1167	9E-11		0.03615825	[0.025-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2308	chr1	225899052	225899053	rs55894909	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	1q42.12	ENAH	rs55894909-G	0.7259	4E-6	(AA)			Illumina [NR] (imputed)	N
2308	chr1	225901005	225901006	rs10915864	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.12	ENAH	rs10915864-G	0.264	2E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2308	chr1	225905013	225905014	rs61851667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q42.12		rs61851667-G	NR	6E-11		0.0251	[0.018-0.033] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2308	chr1	225909339	225909340	rs142381258	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	1q42.12	NR	rs142381258-?	NR	4E-6		3.0686	[0.85-5.29] unit increase	Illumina [at least 560000] (imputed)	N
2308	chr1	225927217	225927218	rs4653663	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	1q42.12	ENAH, SRP9	rs4653663-A	0.255	2E-8		0.091	[0.06-0.122] unit increase	Affymetrix [7207648] (imputed)	N
2308	chr1	225932204	225932205	rs4653430	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.12		rs4653430-?	NR	1E-8				NR [NR]	N
2308	chr1	225932204	225932205	rs4653430	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.12		rs4653430-?	NR	3E-8				NR [NR]	N
2308	chr1	225932204	225932205	rs4653430	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.12		rs4653430-?	NR	4E-8				NR [NR]	N
2308	chr1	225934294	225934295	rs2615075	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q42.12	SRP9	rs2615075-G	NR	5E-6		0.03353836	[0.019-0.048] unit increase	Illumina [> 6200000] (imputed)	N
2308	chr1	225941781	225941782	rs12021809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q42.12	NR	rs12021809-A	0.109842	3E-18		0.026344	[0.02-0.032] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2308	chr1	225942457	225942458	rs2794399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q42.12		rs2794399-T	NR	5E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2308	chr1	225952473	225952474	rs11583244	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	1q42.12	SRP9	rs11583244-T	0.39	8E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [~ 11700000] (imputed)	N
2308	chr1	225956664	225956665	rs74148699	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q42.12	NR	rs74148699-?	NR	2E-8				Illumina [7760689] (imputed)	N
2308	chr1	225957205	225957206	rs12034342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.12		rs12034342-T	0.110055	3E-29		0.03957737	[0.033-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225957205	225957206	rs12034342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q42.12		rs12034342-T	0.11004	2E-14		0.027162448	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225961391	225961392	rs143665849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.12	SRP9	rs143665849-T	0.108416	5E-13		0.0257128	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225962264	225962264	rs151029532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q42.12	SRP9	rs151029532-AGG	0.114043	2E-13		0.025679793	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2308	chr1	225962341	225962341	rs553096047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q42.12		rs553096047-TA	NR	3E-11		0.0251	[0.018-0.033] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2308	chr1	225962341	225962341	rs553096047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q42.12	SRP9	rs553096047-TA	0.116487	2E-13		0.026024263	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2308	chr1	225962524	225962525	rs1849685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs1849685-G	0.13166	4E-17				Affymetrix, Illumina [23472807] (imputed)	N
2308	chr1	225962524	225962525	rs1849685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.12		rs1849685-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.12	SRP9	rs6696074-T	0.565105	1E-12		0.016067663	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q42.12	SRP9	rs6696074-T	0.565121	5E-14		0.017259583	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q42.12	SRP9	rs6696074-T	0.565102	1E-9		0.013922557	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs6696074-C	0.439509	3E-15				Affymetrix, Illumina [22063850] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q42.12	NR	rs6696074-C	0.437335	7E-17		0.016087	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q42.12	NR	rs6696074-T	0.562619	4E-16		0.015297	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs6696074-T	0.516093	3E-19				Affymetrix, Illumina [23467995] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.12		rs6696074-?	NR	3E-16				NR [~ 8900000] (imputed)	N
2308	chr1	225962689	225962690	rs6696074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q42.12	SRP9	rs6696074-T	0.5651	2E-9		0.02240976	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2309	chr1	225974886	225974887	rs11583055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q42.12		rs11583055-T	NR	8E-15		0.0223	[0.017-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2309	chr1	226015115	226015116	rs2671272	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q42.12	NR	rs2671272-?	NR	1E-6		814.8956	NR unit increase	Illumina [2379855]	N
2309	chr1	226017747	226017748	rs2854459	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1q42.12	EPHX1	rs2854459-T	NR	2E-6	(EA)			Illumina [up to 11995908] (imputed)	N
2309	chr1	226026405	226026406	rs2234922	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q42.12	NR	rs2234922-A	0.800096	7E-13		0.00777401	[0.0057-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
2309	chr1	226026405	226026406	rs2234922	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q42.12	NR	rs2234922-A	0.800096	1E-9		0.00751381	[0.0052-0.0098] unit increase	Affymetrix [16582965] (imputed)	N
2309	chr1	226031397	226031398	rs80269059	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	1q42.12	NR	rs80269059-C	NR	5E-7		2.89	[NR]	Illumina [NR] (imputed)	N
2309	chr1	226032676	226032677	rs4149228	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	1q42.12	EPHX1	rs4149228-?	NR	7E-6				Illumina [491617]	N
2309	chr1	226082424	226082425	rs1223245	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	1q42.12	NR	rs1223245-A	0.3578	5E-6		0.11	[0.061-0.15] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
2309	chr1	226091734	226091735	rs360071	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	1q42.12	intergenic	rs360071-T	0.49	4E-6		1.61	[1.32-1.97]	NR [~ 38000000] (imputed)	N
2309	chr1	226095236	226095237	rs143772911	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	1q42.12	NR	rs143772911-?	NR	3E-6		0.1653	[0.096-0.234] unit decrease	Affymetrix [9658292] (imputed)	N
2310	chr1	226150009	226150010	rs77873337	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.12	NR	rs77873337-C	0.01394	5E-9	(ATIC)	0.1591	NR unit decrease	Illumina [1671387] (imputed)	N
2310	chr1	226150009	226150010	rs77873337	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.12	NR	rs77873337-C	0.01394	1E-8	(FDX1)	0.01226	NR unit decrease	Illumina [1671387] (imputed)	N
2311	chr1	226232437	226232438	rs12737863	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	1q42.12	H3F3A	rs12737863-T		6E-6		2.362	[1.34-3.39] unit increase	Illumina [7576458] (imputed)	N
2311	chr1	226292584	226292585	rs11579988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.12	ACBD3	rs11579988-?	NR	9E-6	(glycerol-3-phosphate)	0.18743491	[0.1-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
2311	chr1	226300883	226300884	rs12130296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.12		rs12130296-?	NR	9E-8				NR [~ 8900000] (imputed)	N
2311	chr1	226318063	226318064	rs12752329	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	1q42.12	ACBD3	rs12752329-C		7E-6		2.3339	[1.31-3.35] unit increase	Illumina [7576458] (imputed)	N
2311	chr1	226318207	226318208	rs187386252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.12	RP11-396C23.3	rs187386252-G	0.010412	6E-10		0.0703782	[0.05-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
2311	chr1	226318207	226318208	rs187386252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs187386252-T	0.990098	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
2312	chr1	226372765	226372766	rs3008182	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q42.12	ACBD3	rs3008182-C	0.0108965784877482	4E-6	(G_unclassified_P_Firmicutes_HB)	1.39004	[0.8-1.98] unit decrease	Illumina [7711310] (imputed)	N
2312	chr1	226421156	226421157	rs138510303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q42.12	LIN9	rs138510303-G	0.010064	3E-11		0.07342633	[0.052-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q42.12	NR	rs1870927-A	0.620914	4E-18		0.00719484	[0.0055-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q42.12	NR	rs1870927-A	0.621594	2E-11		0.00772108	[0.0052-0.0102] unit increase	Affymetrix [16585854] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q42.12	NR	rs1870927-A	0.620199	2E-8		0.00681855	[0.0045-0.0091] unit increase	Affymetrix [16582621] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q42.12	NR	rs1870927-A	0.620914	2E-14		0.00715319	[0.0053-0.009] unit increase	Affymetrix [16582965] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q42.12	NR	rs1870927-A	0.621594	2E-9		0.00808127	[0.0052-0.0109] unit increase	Affymetrix [16585866] (imputed)	N
2312	chr1	226426336	226426337	rs1870927	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q42.12	NR	rs1870927-A	0.620199	7E-7		0.00649565	[0.004-0.009] unit increase	Affymetrix [16582614] (imputed)	N
2312	chr1	226430609	226430609	rs10668231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q42.12	LIN9	rs10668231-TTAA	0.676007	5E-12		0.016345104	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2312	chr1	226430609	226430609	rs10668231	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q42.12	NR	rs10668231-I	0.675768	2E-14		0.01605	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2312	chr1	226431435	226431436	rs17263666	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs17263666-C	0.667903	5E-14				Affymetrix, Illumina [17210439] (imputed)	N
2312	chr1	226432004	226432005	rs7414167	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1q42.12	LIN9	rs7414167-T	NR	6E-6				Illumina [up to 11995908] (imputed)	N
2312	chr1	226438453	226438454	rs150477134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q42.12	NR	rs150477134-A	0.990347	5E-11		0.065432	[0.046-0.085] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2312	chr1	226438453	226438454	rs150477134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs150477134-T	0.00953775	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
2312	chr1	226438453	226438454	rs150477134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q42.12	NR	rs150477134-T	0.009847	8E-13		0.070543	[0.051-0.09] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2312	chr1	226445527	226445528	rs7367845	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	1q42.12	LIN9	rs7367845-A	0.46	8E-6		4.46	z score increase	Illumina [6380737] (imputed)	N
2312	chr1	226453617	226453618	rs4418563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.12		rs4418563-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2312	chr1	226473295	226473296	rs10753418	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q42.12	LIN9	rs10753418-?		2E-6				Illumina [4322238] (imputed)	N
2313	chr1	226496395	226496396	rs2666425	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LIN9	rs2666425-?	NR	9E-9	(female)	0.433052	[NR] unit increase	Affymetrix [NR] (imputed)	N
2313	chr1	226512465	226512466	rs181295069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q42.12	Intergenic	rs181295069-T	0.999	2E-6	(AA)	0.308	unit increase	Illumina [NR] (imputed)	N
2313	chr1	226523030	226523031	rs76064236	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	1q42.12	PARP1	rs76064236-G	0.005	1E-6		2.28	[1.69-3.16]	Illumina [1438399] (imputed)	N
2313	chr1	226523559	226523560	rs11800726	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q42.12	NR	rs11800726-?		9E-6				Illumina [4322238] (imputed)	N
2313	chr1	226538053	226538054	rs9943081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q42.12		rs9943081-A	NR	2E-19		0.0213	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2313	chr1	226538053	226538054	rs9943081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs9943081-A	0.199244	3E-30				Affymetrix, Illumina [24588908] (imputed)	N
2313	chr1	226539352	226539353	rs76887998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q42.12		rs76887998-C	0.147529	6E-16		0.025722492	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2313	chr1	226539352	226539353	rs76887998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q42.12		rs76887998-C	0.147547	2E-13		0.023370083	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2313	chr1	226542048	226542049	rs6426551	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q42.12	PARP1	rs6426551-A	0.254	7E-6		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
2313	chr1	226545784	226545785	rs12143101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q42.12		rs12143101-C	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2313	chr1	226550923	226550924	rs747657	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	1q42.12	PARP1	rs747657-G	0.357776	2E-17				Affymetrix, Illumina [NR] (imputed)	N
2313	chr1	226551528	226551529	rs752307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q42.12		rs752307-G	NR	2E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2313	chr1	226551528	226551529	rs752307	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q42.12	PARP1	rs752307-?	NR	2E-8		0.02424	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
2313	chr1	226553489	226553490	rs34917861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1q42.12	NR	rs34917861-C	0.410458	1E-10		0.024678	[0.017-0.032] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
2313	chr1	226562620	226562621	rs3219104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1q42.12		rs3219104-C	0.600031	2E-9		0.0202544	[0.014-0.027] unit increase	Illumina [13478928] (imputed)	N
2313	chr1	226562620	226562621	rs3219104	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	1q42.12	PARP1	rs3219104-C	0.83	1E-10		0.042	[0.03-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
2313	chr1	226562620	226562621	rs3219104	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	1q42.12	PARP1	rs3219104-A	NR	2E-18		0.057	NR unit decrease	Illumina [6407959] (imputed)	N
2313	chr1	226562620	226562621	rs3219104	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	1q42.12	PARP1	rs3219104-A	NR	2E-16	(East Asian)	0.074	NR unit decrease	Illumina [6407959] (imputed)	N
2313	chr1	226564690	226564691	rs3219090	21983785	Macgregor S	2011-10-09	Nat Genet	Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3.	Melanoma	2,168 European ancestry cases, 4,387 European ancestry controls	5,193 European ancestry cases, 15,144 European ancestry controls	1q42.12	PARP1	rs3219090-C	0.67	9E-8		1.15	[NR]	Illumina [5480804] (imputed)	N
2313	chr1	226577305	226577306	rs932002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	1q42.12		rs932002-T	NR	3E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2313	chr1	226586919	226586920	rs2793381	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	1q42.12		rs2793381-C	NR	7E-7		1.079	[1.047-1.112]	Affymetrix [7846216] (imputed)	N
2313	chr1	226589957	226589958	rs1805404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q42.12	NR	rs1805404-A	0.155024	5E-20		0.023673	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2313	chr1	226603634	226603635	rs2695237	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	1q42.12	RP11-118H4.3	rs2695237-T	0.6284	2E-18		1.0947	NR	Affymetrix, Illumina [NR] (imputed)	N
2313	chr1	226603634	226603635	rs2695237	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	1q42.12	PARP1	rs2695237-?	NR	1E-11				Affymetrix, Illumina [7850345] (imputed)	N
2313	chr1	226605080	226605081	rs1341335	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	1q42.12		rs1341335-C	NR	1E-7		1.1055	NR	Affymetrix [7846216] (imputed)	N
2314	chr1	226692934	226692935	rs143554223	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q42.12	NR	rs143554223-?	NR	2E-6		16.712	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2314	chr1	226704623	226704624	rs1151814	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	1q42.12	PARP1	rs1151814-C	0.10	2E-6		0.16	[0.10-0.22] unit decrease	Illumina [~ 6300000] (imputed)	N
2314	chr1	226706246	226706247	rs148467525	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q42.12	NR	rs148467525-?	NR	2E-6		16.712	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2315	chr1	226759860	226759861	rs17520554	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	1q42.12		rs17520554-?	NR	8E-6		0.17	[0.094-0.246] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2315	chr1	226780045	226780046	rs581400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q42.12	Intergenic	rs581400-A	0.3364	6E-11	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2315	chr1	226782861	226782862	rs114921230	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	1q42.12	NR	rs114921230-?	NR	5E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.9	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2315	chr1	226787095	226787096	rs55755259	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q42.12	Intergenic	rs55755259-T	0.6527	4E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2315	chr1	226788951	226788952	rs12095420	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	1q42.12	NR	rs12095420-?	NR	3E-6	(AA)	7.04	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2315	chr1	226790000	226790001	rs41314284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q42.12	Intergenic	rs41314284-T	0.0974	9E-11	(MTAG)	0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2315	chr1	226790000	226790001	rs41314284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q42.12	Intergenic	rs41314284-C	0.9026	2E-9		0.0198	[0.013-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2315	chr1	226790000	226790001	rs41314284	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q42.12	NR	rs41314284-?	NR	1E-6		4.886	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2315	chr1	226790000	226790001	rs41314284	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q42.12	NR	rs41314284-T	NR	2E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
2315	chr1	226792325	226792326	rs41314286	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q42.12	NR	rs41314286-?	NR	9E-7		3802.1394	NR unit decrease	Illumina [2379855]	N
2315	chr1	226797425	226797426	rs6664080	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	1q42.12	C1orf95	rs6664080-C	0.29693	8E-6		0.361866	[0.21-0.52] unit increase	Illumina [at least 520076] (imputed)	N
2315	chr1	226799082	226799083	rs11577545	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder (unexposed to adversity)	3,139 Han Chinese ancestry cases, 3,832 Han Chinese ancestry controls	NA	1q42.12	C1ORF95	rs11577545-T	0.21	3E-8		5.54	z score increase	NR [4313801] (imputed)	N
2315	chr1	226805123	226805124	rs4653454	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	1q42.12	intergenic	rs4653454-?	NR	2E-7		1.194084	[1.12-1.28]	Illumina [5842835] (imputed)	N
2315	chr1	226846711	226846712	rs16846351	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	1q42.12	ITPKB	rs16846351-?	NR	8E-10				Illumina [5843213] (imputed)	N
2315	chr1	226855888	226855889	rs10916025	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	1q42.12	ITPKB	rs10916025-G	0.80	6E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
2315	chr1	226868917	226868918	rs3820640	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	1q42.12	ITPKB	rs3820640-T	0.84	3E-8		0.02	[0.013-0.027] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
2315	chr1	226868917	226868918	rs3820640	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	1q42.12	ITPKB	rs3820640-T	0.84	1E-8		0.044	[0.029-0.059] unit increase	Affymetrix [at least 8900000] (imputed)	N
2316	chr1	226905918	226905919	rs12046462	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	1q42.12	NR	rs12046462-?	NR	3E-6		0.0901	[0.052-0.128] unit increase	Illumina [at least 560000] (imputed)	N
2316	chr1	226909232	226909233	rs1289273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q42.12		rs1289273-G	NR	7E-11		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2316	chr1	226909232	226909233	rs1289273	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	1q42.12	NR	rs1289273-?	NR	9E-7		0.085985	[0.052-0.12] unit increase	NR [13958389] (imputed)	N
2316	chr1	226909232	226909233	rs1289273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q42.12	ITPKB	rs1289273-G	0.507838	4E-13		0.016010249	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2316	chr1	226909232	226909233	rs1289273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.12	NR	rs1289273-G	0.550229	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
2316	chr1	226909232	226909233	rs1289273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q42.12	NR	rs1289273-G	0.508585	9E-14		0.015909	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2316	chr1	226914733	226914734	rs697852	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	1q42.12	ITPKB	rs697852-A	0.82	2E-10				NR [> 9500000] (imputed)	N
2316	chr1	226914733	226914734	rs697852	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	1q42.12	ITPKB	rs697852-A	0.821214	2E-9		1.0486665	[1.03264042532009-1.06494123231415]	NR [9572556] (imputed)	N
2316	chr1	226914733	226914734	rs697852	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	1q42.12	NR	rs697852-?	NR	7E-8		1.0416667	NR	Affymetrix [15688218] (imputed)	N
2316	chr1	226914733	226914734	rs697852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	1q42.12		rs697852-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2316	chr1	226914733	226914734	rs697852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q42.12		rs697852-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2316	chr1	226914733	226914734	rs697852	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	1q42.12	ITPKB	rs697852-A	0.85	2E-9		1.041	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
2316	chr1	226916077	226916078	rs4653767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	1q42.12		rs4653767-C	NR	8E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
2316	chr1	226916077	226916078	rs4653767	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1q42.12	ITPKB	rs4653767-T		6E-8		0.0846	[0.054-0.115] unit increase	Illumina [NR]	N
2316	chr1	226916077	226916078	rs4653767	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q42.12	ITPKB	rs4653767-T	0.7196	1E-15		0.0833	[0.063-0.104] unit increase	NR [7784415] (imputed)	N
2316	chr1	226916077	226916078	rs4653767	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	1q42.12	ITPKB	rs4653767-T	0.685	2E-11		1.0869565	[1.06-1.11]	Illumina [11933700] (imputed)	N
2316	chr1	226921283	226921283	rs569802289	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ITPKB	rs569802289-?	NR	4E-11	(female)	3.00763	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2316	chr1	226923937	226923938	rs6667260	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	1q42.12	NR	rs6667260-C	0.4579	1E-13		0.0016	[0.0012-0.002] unit decrease	Affymetrix [NR] (imputed)	N
2316	chr1	226923937	226923938	rs6667260	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q42.12	ITPKB, PSEN2, ADCK3	rs6667260-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
2316	chr1	226941589	226941590	rs835671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q42.12		rs835671-T	NR	8E-9		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2316	chr1	226971028	226971029	rs6684472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	1q42.12	NR	rs6684472-T	NR	7E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2316	chr1	226976331	226976332	rs12142635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q42.12		rs12142635-A	0.05721	4E-11		0.031839285	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2316	chr1	226977030	226977031	rs6426540	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	1q42.12	NR	rs6426540-?		3E-6				Illumina [892589]	N
2316	chr1	226983893	226983894	rs116164290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.12	NR	rs116164290-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2317	chr1	227018918	227018919	rs6692729	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	1q42.13	intergenic	rs6692729-?	NR	7E-6	(SCR Amplitude)	0.02	[0.010-0.030] unit decrease	Illumina [527829]	N
2317	chr1	227059605	227059606	rs1296171	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1q42.13	NR	rs1296171-G	NR	1E-8		0.01362	[0.0089-0.0183] unit decrease	Affymetrix [10847151] (imputed)	N
2317	chr1	227075401	227075402	rs2246221	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q42.13	PSEN2	rs2246221-G	0.501726	2E-17		0.0155933	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
2317	chr1	227075401	227075402	rs2246221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q42.13		rs2246221-?	NR	7E-14				NR [~ 8900000] (imputed)	N
2317	chr1	227075401	227075402	rs2246221	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q42.13		rs2246221-?	NR	2E-17		0.0167433	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
2317	chr1	227085823	227085824	rs1800674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q42.13		rs1800674-G	NR	2E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2317	chr1	227085823	227085824	rs1800674	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q42.13	ADCK3	rs1800674-G	0.5615	4E-8		5.481	NR z score decrease	Illumina [26237160] (imputed)	N
2317	chr1	227095344	227095344	rs34894420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.13	ADCK3	rs34894420-CA	0.279395	7E-10		0.015267648	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2317	chr1	227097038	227097039	rs1938386	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	1q42.13	NR	rs1938386-G	NR	5E-8		0.01301	[0.0083-0.0177] unit decrease	Affymetrix [10847151] (imputed)	N
2317	chr1	227139021	227139022	rs111408347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q42.13		rs111408347-A	0.034479	2E-11		0.0675203	[0.048-0.087] unit increase	Illumina [13476266] (imputed)	N
2317	chr1	227139021	227139022	rs111408347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	1q42.13		rs111408347-A	0.034497	2E-9		0.0612778	[0.041-0.081] unit increase	Illumina [13476299] (imputed)	N
2317	chr1	227140702	227140703	rs16846735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q42.13	Intergenic	rs16846735-G	0.7855	4E-11		0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2318	chr1	227150265	227150266	rs1892490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q42.13	ADCK3	rs1892490-A	NR	1E-8		0.0199948	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
2318	chr1	227150265	227150266	rs1892490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs1892490-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
2318	chr1	227150973	227150973	rs140941206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	ADCK3	rs140941206-GCTGC	NR	3E-12		0.0318928	[0.023-0.041] unit decrease	Affymetrix [321114] (imputed)	N
2318	chr1	227168554	227168555	rs2777832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	ADCK3	rs2777832-A	NR	4E-13		0.025154	[0.018-0.032] unit decrease	Affymetrix [321114] (imputed)	N
2318	chr1	227168554	227168555	rs2777832	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q42.13	NR	rs2777832-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2318	chr1	227170297	227170298	rs2297412	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q42.13	NR	rs2297412-A	0.52	9E-9		0.0109	[0.0071-0.0147] unit decrease	NR [NR]	N
2318	chr1	227170297	227170298	rs2297412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	1q42.13	ADCK3	rs2297412-G	0.4754	3E-11		0.02386963	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227170707	227170708	rs55958233	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q42.13	ADCK3	rs55958233-T	0.0158360176619557	6E-6	(G_Acidaminococcus_HB)	1.0423	[0.59-1.49] unit increase	Illumina [7711310] (imputed)	N
2318	chr1	227172289	227172290	rs12593	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	1q42.13	ADCK3	rs12593-T	NR	3E-15	(female)	1.0371	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
2318	chr1	227172289	227172290	rs12593	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	1q42.13	NR	rs12593-T	NR	2E-16		1.0587		Affymetrix [9869154] (imputed)	N
2318	chr1	227172289	227172290	rs12593	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	1q42.13	ADCK3	rs12593-T	NR	2E-33		1.04	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
2318	chr1	227172289	227172290	rs12593	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	1q42.13	ADCK3	rs12593-?	0.467	6E-12		1.0693254	[1.05-1.09]	Affymetrix [NR] (imputed)	N
2318	chr1	227173476	227173477	rs3768419	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q42.13	ADCK3	rs3768419-C	0.48	2E-14		0.49	[0.37-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2318	chr1	227173536	227173537	rs3768420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q42.13	NR	rs3768420-C	0.785571	6E-10		0.00601737	[0.004-0.008] unit increase	Affymetrix [16582909] (imputed)	N
2318	chr1	227173536	227173537	rs3768420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q42.13	NR	rs3768420-C	0.785749	1E-9		0.00854721	[0.0056-0.0115] unit increase	Affymetrix [16585854] (imputed)	N
2318	chr1	227173536	227173537	rs3768420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q42.13	NR	rs3768420-C	0.785571	7E-7		0.00542839	[0.0032-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
2318	chr1	227173536	227173537	rs3768420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q42.13	NR	rs3768420-C	0.785749	2E-6		0.00794689	[0.0046-0.0113] unit increase	Affymetrix [16585866] (imputed)	N
2318	chr1	227173891	227173892	rs17592479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q42.13	ADCK3	rs17592479-A	0.5075	7E-13		0.02564574	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227173891	227173892	rs17592479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q42.13	ADCK3	rs17592479-A	0.5075	4E-13		0.02589344	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227173891	227173892	rs17592479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q42.13	ADCK3	rs17592479-A	0.5075	3E-13		0.0260136	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227173891	227173892	rs17592479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q42.13	ADCK3	rs17592479-A	0.5073	4E-12		0.0246634	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227173891	227173892	rs17592479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q42.13	ADCK3	rs17592479-A	0.5075	1E-12		0.02538235	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227174144	227174145	rs7552783	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q42.13	ADCK3	rs7552783-C	0.4953	3E-14		0.5041	[0.37-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2318	chr1	227174209	227174210	rs3738725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q42.13	ADCK3	rs3738725-C	0.512342	3E-17		0.018658442	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2318	chr1	227175245	227175245	rs3215920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q42.13		rs3215920-CT	NR	4E-19		0.0207	[0.016-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2318	chr1	227175366	227175367	rs6426558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q42.13		rs6426558-?	NR	5E-15				NR [~ 8900000] (imputed)	N
2318	chr1	227175366	227175367	rs6426558	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q42.13	RP5-1087E8.3	rs6426558-T	0.5111	3E-14		0.02704981	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227175967	227175970	rs10586161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q42.13	RP5-1087E8.3	rs10586161-C	0.510114	2E-23		0.022105468	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2318	chr1	227175967	227175970	rs10586161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.13	RP5-1087E8.3	rs10586161-C	0.510158	2E-12		0.015585649	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2318	chr1	227180946	227180947	rs3795445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs3795445-C	0.452649	2E-32				Affymetrix, Illumina [23114412] (imputed)	N
2318	chr1	227180946	227180947	rs3795445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q42.13	NR	rs3795445-C	0.5098	1E-30		0.023599	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2318	chr1	227192279	227192280	rs17528077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	1q42.13	CDC42BPA	rs17528077-T	0.7635	3E-8		0.0054	[0.0034-0.0074] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2318	chr1	227195727	227195728	rs1929863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs1929863-T	0.392805	3E-20				Affymetrix, Illumina [24649327] (imputed)	N
2318	chr1	227201105	227201106	rs6665290	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	1q42.13	ADCK3	rs6665290-T	NR	1E-20	(male)	1.0518	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
2318	chr1	227201105	227201106	rs6665290	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q42.13	CDC42BPA	rs6665290-T	0.4605	4E-11		0.02398569	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2318	chr1	227204902	227204903	rs61834007	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q42.13	CDC42BPA	rs61834007-?		6E-9		1.0905	[0.72-1.46] unit increase	Illumina [31500000] (imputed)	N
2318	chr1	227205330	227205331	rs3795453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	1q42.13		rs3795453-C	NR	3E-15		0.0572	[0.043-0.071] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
2318	chr1	227206037	227206038	rs1953012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.13	CDC42BPA	rs1953012-C	0.639213	3E-18		0.02001931	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2318	chr1	227206037	227206038	rs1953012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q42.13	NR	rs1953012-C	0.636644	1E-20		0.017823	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2318	chr1	227213967	227213968	rs7535826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.13	CDC42BPA	rs7535826-T	0.466377	3E-24		0.022475122	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2318	chr1	227223735	227223736	rs7521639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	CDC42BPA	rs7521639-C	NR	5E-8		0.0155228	[0.01-0.0211] unit decrease	Affymetrix [321114] (imputed)	N
2318	chr1	227228079	227228080	rs12123516	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.13	CABC1	rs12123516-?	NR	3E-6	(taurocholate)	0.68924224	[0.4-0.98] unit increase	Affymetrix [at least 2500000] (imputed)	N
2318	chr1	227252625	227252626	rs10916082	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q42.13	CDC42BPA	rs10916082-A	0.73	8E-9		0.177	[0.12-0.24] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2318	chr1	227254044	227254045	rs12144369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q42.13		rs12144369-T	NR	4E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2319	chr1	227290396	227290397	rs72748189	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.13	NR	rs72748189-G	0.01394	4E-9	(LTF)	0.3275	NR unit increase	Illumina [1671387] (imputed)	N
2319	chr1	227301609	227301610	rs77464064	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	1q42.13	CDC42BPA	rs77464064-T		6E-9		1.042	[NR]	Affymetrix [up to 79000000] (imputed)	N
2319	chr1	227307815	227307816	rs115346894	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	1q42.13	CDC42BPA, LOC100271842, LOC100126822	rs115346894-G	0.991113	2E-6		7.707701	NR	Illumina [5009928] (imputed)	N
2319	chr1	227354534	227354535	rs2175789	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	1q42.13	NA	rs2175789-T		2E-8		0.014335	[0.0093-0.0193] unit decrease	Illumina [13288253] (imputed)	N
2319	chr1	227355917	227355918	rs6426577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q42.13		rs6426577-A	NR	8E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2319	chr1	227355917	227355918	rs6426577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	CDC42BPA	rs6426577-C	NR	2E-8		0.0161274	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
2319	chr1	227381055	227381056	rs112779011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q42.13		rs112779011-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2319	chr1	227386970	227386971	rs6671926	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	1q42.13	CDC42BPA	rs6671926-A	0.08	4E-14		0.067	[0.049-0.085] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2319	chr1	227386970	227386971	rs6671926	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	1q42.13	CDC42BPA	rs6671926-A	0.08	2E-12	(EA)	0.067	[0.047-0.087] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2319	chr1	227386970	227386971	rs6671926	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	1q42.13	CDC42BPA	rs6671926-A	0.08	2E-7		0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
2319	chr1	227399213	227399214	rs12068632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q42.13		rs12068632-T	NR	2E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2319	chr1	227399213	227399214	rs12068632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q42.13	NR	rs12068632-T	NR	8E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2320	chr1	227424111	227424112	rs139496757	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	1q42.13	BTF3P9, RPS18P3, LOC100130466	rs139496757-A	0.990879	3E-6		7.530715	NR	Illumina [5009928] (imputed)	N
2320	chr1	227456064	227456065	rs76132272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q42.13	NR	rs76132272-T	0.0716	6E-11		0.0139991	[0.0098-0.0182] unit increase	NR [9732723] (imputed)	N
2320	chr1	227463671	227463672	rs112282634	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q42.13		rs112282634-G	0.23	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
2320	chr1	227492106	227492106	rs558275877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	CDC42BPA	rs558275877-CA	NR	8E-11		0.0203238	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
2320	chr1	227503468	227503469	rs11806180	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1q42.13	CDC42BPA	rs11806180-?	NR	1E-8		1.0485477	NR	Affymetrix [9154080] (imputed)	N
2320	chr1	227515048	227515049	rs11808210	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	1q42.13	ZNF678	rs11808210-A	0.0777	6E-9		0.02180018	[0.014-0.029] unit increase	Affymetrix [11514654] (imputed)	N
2320	chr1	227523743	227523744	rs7541775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.13		rs7541775-?	NR	4E-17				NR [~ 8900000] (imputed)	N
2320	chr1	227536668	227536669	rs145589901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	1q42.13		rs145589901-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2321	chr1	227560793	227560794	rs114537871	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	1q42.13	CDC42BPA	rs114537871-A	0.08	8E-11		0.027	[0.019-0.035] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
2321	chr1	227562377	227562378	rs3014270	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16- Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q42.13		rs3014270-T	0.07424	2E-8		0.2609	[0.17-0.35] unit decrease	Illumina [18224179] (imputed)	N
2321	chr1	227563679	227563680	rs11808696	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	1q42.13	CDC42BPA	rs11808696-T	0.08	6E-48		0.05	unit decrease	Affymetrix [8928767] (imputed)	N
2321	chr1	227565170	227565170	rs112123925	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	1q42.13	CDC42BPA, ZNF678	rs112123925-?	NR	2E-12		0.8592	[0.61-1.11] unit increase	Affymetrix [11100000] (imputed)	N
2321	chr1	227571112	227571113	rs112047121	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	1q42.13	CDC42BPA	rs112047121-C	0.082	7E-17		0.06	[0.046-0.074] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
2321	chr1	227576663	227576664	rs55785556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	CTD-2090I13.1	rs55785556-C	NR	3E-8		0.0208155	[0.013-0.028] unit decrease	Affymetrix [321114] (imputed)	N
2321	chr1	227579343	227579344	rs11584506	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs11584506-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2321	chr1	227581307	227581308	rs10916137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q42.13	CTD-2090I13.1	rs10916137-A	NR	1E-8		0.0213079	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
2321	chr1	227581519	227581520	rs11811982	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1q42.13	CDC42BPA	rs11811982-A		4E-16		0.062	[0.046-0.078] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
2321	chr1	227581519	227581520	rs11811982	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	1q42.13	CDC42BPA	rs11811982-A		1E-14	(EA)	0.063	[0.047-0.079] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
2321	chr1	227585660	227585661	rs3000801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	CTD-2090I13.1	rs3000801-A	NR	8E-9		0.0184877	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
2321	chr1	227587081	227587082	rs3014276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q42.13	CTD-2090I13.1	rs3014276-G	NR	2E-8		0.0178155	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
2321	chr1	227596279	227596280	rs12408981	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs12408981-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
2321	chr1	227599078	227599079	rs3000790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs3000790-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
2321	chr1	227614747	227614748	rs10916143	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	1q42.13	intergenic	rs10916143-A	0.6305	8E-7		0.2458	[0.15-0.34] unit decrease	Illumina [at least 4683137] (imputed)	N
2321	chr1	227622010	227622011	rs7546172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q42.13	BTF3P9	rs7546172-G	NR	4E-8		0.0169904	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
2321	chr1	227667789	227667790	rs12410462	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	1q42.13	intergenic	rs12410462-A	0.122	4E-7	(% improvement - 12 weeks)	1.259	[1.16-1.36]	Affymetrix, Illumina [1200000] (imputed)	N
2322	chr1	227672903	227672903	rs113195514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	RP11-275O4.4	rs113195514-T	NR	3E-11		0.0235787	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
2322	chr1	227676418	227676419	rs2814080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs2814080-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2322	chr1	227677722	227677723	rs77271542	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	1q42.13	CDC42BPA, ZNF678	rs77271542-A	0.94	3E-16		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
2322	chr1	227677722	227677723	rs77271542	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	1q42.13	ZNF678	rs77271542-A	0.94	7E-14		0.01	[0.0063-0.0137] unit decrease	Affymetrix [at least 8002429] (imputed)	N
2322	chr1	227680037	227680038	rs2814077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	TUBB8P10	rs2814077-G	NR	4E-8		0.0156278	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
2322	chr1	227689632	227689633	rs2814064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	TUBB8P9	rs2814064-C	NR	1E-8		0.0169933	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
2322	chr1	227695516	227695517	rs3887753	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q42.13	NR	rs3887753-C	0.17725199999999997	3E-11		0.00699954	[0.0048-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
2322	chr1	227695516	227695517	rs3887753	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q42.13	NR	rs3887753-C	0.17725199999999997	4E-6		0.00546175	[0.003-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
2322	chr1	227715032	227715032	rs796664434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	RP11-275O4.3	rs796664434-G	NR	1E-17		0.0334232	[0.026-0.041] unit decrease	Affymetrix [321114] (imputed)	N
2322	chr1	227715032	227715032	rs796664434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	1q42.13	RP11-275O4.3	rs796664434-G	NR	3E-8		0.02165	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
2322	chr1	227731061	227731062	rs903691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	1q42.13	NR	rs903691-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2322	chr1	227731061	227731062	rs903691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q42.13		rs903691-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2322	chr1	227731073	227731073	rs3033487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q42.13	RNA5SP77	rs3033487-T	NR	3E-8		0.0199494	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
2322	chr1	227750067	227750068	rs6696239	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	1q42.13	ZNF678	rs6696239-A	0.187	7E-24		0.038	[0.03-0.046] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2322	chr1	227753495	227753496	rs59885016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	1q42.13	ZNF678	rs59885016-A	NR	1E-9		0.0258854	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
2322	chr1	227753495	227753496	rs59885016	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs59885016-?	NR	7E-27				Affymetrix [~ 8270000] (imputed)	N
2322	chr1	227771215	227771216	rs6672530	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q42.13	ZNF678	rs6672530-A	0.8129	8E-10	(EA)	0.0283	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2322	chr1	227771215	227771216	rs6672530	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q42.13	ZNF678	rs6672530-A	0.8129	1E-7	(EA, women)	0.0313	[0.02-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2322	chr1	227776826	227776827	rs12140813	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	1q42.13	ZNF678	rs12140813-T	0.1856	5E-8		0.0511	[0.033-0.07] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
2322	chr1	227797949	227797950	rs1390401	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	1q42.13	ZNF678	rs1390401-A	0.82	5E-9		0.04	[0.01-0.08] s.d. increase (males)	Affymetrix [402951]	N
2323	chr1	227804040	227804041	rs10916174	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q42.13	ZNF678	rs10916174-A	0.15536	4E-18	(females)	0.03676	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2323	chr1	227804040	227804041	rs10916174	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q42.13	ZNF678	rs10916174-A	0.15536	1E-8		0.01695	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2323	chr1	227804040	227804041	rs10916174	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q42.13	ZNF678	rs10916174-A	0.15536	4E-11	(females)	0.03026	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2323	chr1	227804040	227804041	rs10916174	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q42.13	ZNF678	rs10916174-A	0.15536	7E-8		0.0134	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2323	chr1	227804040	227804041	rs10916174	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	1q42.13	ZNF678	rs10916174-A	0.15536	3E-9	(females)	0.02127	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2323	chr1	227819368	227819369	rs12080321	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q42.13	ZNF678	rs12080321-?		7E-6				Illumina [4322238] (imputed)	N
2323	chr1	227899893	227899894	rs77969686	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs77969686-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
2323	chr1	227902471	227902472	rs10916199	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Thumb osteoarthritis severity (hand Klsum)	2,071 Dutch ancestry individuals	1,203 individuals	1q42.13	ZNF678	rs10916199-A	0.81	2E-13		0.31	[0.23-0.39] unit decrease	Illumina [10500000] (imputed)	N
2323	chr1	227911882	227911883	rs10799445	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	1q42.13	JMJD4	rs10799445-A	0.77	2E-13		0.032	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
2323	chr1	227918561	227918562	rs6664307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	SNAP47, JMJD4	rs6664307-T	NR	8E-13		0.0237907	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
2323	chr1	227927241	227927242	rs11588850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q42.13		rs11588850-G	NR	3E-51		0.0325	[0.028-0.037] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2323	chr1	227927241	227927242	rs11588850	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Thumb osteoarthritis	10,536 European ancestry cases, 236,919 European ancestry controls	NA	1q42.13		rs11588850-A	0.8199	4E-10		0.8745026	[0.838581731-0.91196217]	Affymetrix, Illumina [NR] (imputed)	N
2323	chr1	227927241	227927242	rs11588850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	1q42.13	SNAP47	rs11588850-G	NR	4E-8		0.0204386	[0.013-0.028] unit decrease	Affymetrix [321016] (imputed)	N
2323	chr1	227927241	227927242	rs11588850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.13		rs11588850-?	NR	1E-96				NR [~ 8900000] (imputed)	N
2323	chr1	227927241	227927242	rs11588850	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q42.13	SNAP47	rs11588850-A	0.8399	2E-9		0.0566	[0.038-0.075] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2324	chr1	227949611	227949612	rs10916203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	SNAP47	rs10916203-C	NR	3E-9		0.0169452	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
2324	chr1	227955275	227955276	rs11580196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	1q42.13	SNAP47	rs11580196-G	NR	2E-9		0.0244325	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
2324	chr1	227957590	227957591	rs10916205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	1q42.13	SNAP47	rs10916205-T	NR	5E-8		0.015565	[0.01-0.0212] unit decrease	Affymetrix [319769] (imputed)	N
2324	chr1	227957590	227957591	rs10916205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	1q42.13	SNAP47	rs10916205-T	NR	4E-9		0.016809	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
2324	chr1	227957590	227957591	rs10916205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	SNAP47	rs10916205-T	NR	3E-13		0.0209399	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
2324	chr1	227959416	227959417	rs6683757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	1q42.13	NR	rs6683757-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
2324	chr1	227985251	227985252	rs10916208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	SNAP47	rs10916208-C	NR	8E-10		0.0232865	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
2324	chr1	227993112	227993113	rs35862668	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 80)	19,670 European ancestry individuals	NA	1q42.13		rs35862668-?	NR	1E-8				NR [9705931] (imputed)	N
2324	chr1	227999131	227999132	rs12075593	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	1q42.13		rs12075593-C	0.783177	1E-6		0.0111851	[0.0067-0.0157] unit decrease	Illumina [13900000] (imputed)	N
2324	chr1	227999131	227999132	rs12075593	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	1q42.13		rs12075593-C	0.782166	8E-6		0.0140982	[0.008-0.0202] unit decrease	Illumina [13900000] (imputed)	N
2324	chr1	228016369	228016370	rs1582114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	1q42.13	PRSS38	rs1582114-G	NR	3E-9		0.0176198	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
2324	chr1	228022398	228022399	rs113207574	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q42.13	PRSS38, SNAP47, WNT9A, SNAP47-AS1	rs113207574-T	NR	7E-6	(number of awakenings after sleep onset, weekdays)	0.1807	[0.1-0.26] unit decrease	Affymetrix [7141204] (imputed)	N
2324	chr1	228056867	228056868	rs6690181	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q42.13	PRSS38	rs6690181-T	0.621442	2E-11		0.0140517	[0.01-0.0181] unit increase	Affymetrix [NR] (imputed)	N
2324	chr1	228056867	228056868	rs6690181	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q42.13	WNT9A	rs6690181-?	NR	4E-8		0.015	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
2324	chr1	228058966	228058967	rs10916232	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	1q42.13	WNT9A	rs10916232-?	NR	7E-6				Illumina [1940243] (imputed)	N
2324	chr1	228059503	228059504	rs144211477	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q42.13	NR	rs144211477-A	NR	7E-6		0.4307	[0.24-0.62] unit decrease	Illumina [11133794] (imputed)	N
2325	chr1	228088832	228088833	rs10916239	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q42.13	WNT9A	rs10916239-T	0.619944	2E-9		0.0118827	[0.008-0.0157] unit decrease	Affymetrix [NR] (imputed)	N
2325	chr1	228096578	228096579	rs2185774	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1q42.13	intergenic	rs2185774-?	NR	3E-7	(AA)	0.159	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
2325	chr1	228103160	228103161	rs34780873	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q42.13	WNT9A	rs34780873-T	0.7971	3E-14		0.0183	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
2325	chr1	228112120	228112121	rs4653889	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.13	WNT9A	rs4653889-A		1E-7		0.205	unit increase	Affymetrix [at least 2696785] (imputed)	N
2325	chr1	228112120	228112121	rs4653889	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.13	WNT9A	rs4653889-A		1E-10		0.152	unit increase	Affymetrix [at least 2696785] (imputed)	N
2325	chr1	228116280	228116281	rs605410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q42.13		rs605410-G	NR	5E-10		0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2325	chr1	228122900	228122901	rs2796056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1q42.13		rs2796056-A	NR	2E-9		0.0362	[0.024-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2325	chr1	228133321	228133322	rs35799012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.13		rs35799012-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2325	chr1	228139671	228139672	rs681239	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	1q42.13	NR	rs681239-G	0.6	1E-20		1.6129031	[NR]	Illumina [747089]	N
2325	chr1	228153916	228153917	rs849898	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	1q42.13	WNT9A, LOC728728	rs849898-?	NR	1E-6		2.73	[1.96-3.79]	Illumina [862198]	N
2325	chr1	228157362	228157363	rs76109497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	1q42.13		rs76109497-?	NR	6E-10				NR [~ 8900000] (imputed)	N
2325	chr1	228161883	228161884	rs9662999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q42.13		rs9662999-G	NR	4E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2325	chr1	228161887	228161888	rs189043356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.13		rs189043356-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2325	chr1	228179098	228179099	rs2527617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	1q42.13		rs2527617-G	0.686186	4E-18		0.018834	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
2325	chr1	228179098	228179099	rs2527617	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	1q42.13	WNT9A, WNT3A	rs2527617-?	NR	3E-18		0.026790163	[0.021-0.033] unit decrease	Illumina [27896057] (imputed)	N
2325	chr1	228189494	228189495	rs708107	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q42.13		rs708107-T	0.45	4E-17		8.42	z score increase	Affymetrix [9061022] (imputed)	N
2325	chr1	228189494	228189495	rs708107	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q42.13		rs708107-T	0.45	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
2325	chr1	228191074	228191075	rs2760061	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1q42.13	WNT3A	rs2760061-A	0.481262	3E-10		0.038789548	[0.027-0.051] unit increase	Affymetrix [7288503] (imputed)	N
2325	chr1	228191074	228191075	rs2760061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q42.13		rs2760061-?	NR	2E-20				NR [~ 8900000] (imputed)	N
2325	chr1	228191074	228191075	rs2760061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q42.13		rs2760061-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2325	chr1	228191074	228191075	rs2760061	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q42.13	WNT3A	rs2760061-A	0.47	2E-16		0.23	[0.17-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
2325	chr1	228191364	228191365	rs708111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q42.13		rs708111-A	NR	6E-12		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2325	chr1	228192752	228192753	rs708113	34902334	Trepo E	2021-12-11	Lancet Oncol	Common genetic variation in alcohol-related hepatocellular carcinoma: a case-control genome-wide association study.	Alcohol-related hepatocellular carcinoma	775 European ancestry cases, 1,332 European ancestry controls	NA	1q42.13	WNT3A, WNT9A	rs708113-T	0.41	1E-8		0.66	[0.57-0.76]	Illumina [7962325] (imputed)	N
2326	chr1	228203267	228203268	rs708119	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	1q42.13		rs708119-C	0.6771	4E-7		1.1	[1.06-1.14]	Illumina [11796347] (imputed)	N
2326	chr1	228204496	228204497	rs1745416	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q42.13	NR	rs1745416-G	0.4874	4E-11				NR [9056863] (imputed)	N
2326	chr1	228216996	228216997	rs708122	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	1q42.13	WNT3A	rs708122-C	0.68105	2E-9		0.016508	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2326	chr1	228272686	228272687	rs12029076	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q42.13		rs12029076-C	0.2	5E-15		7.84	z score increase	Affymetrix [9061022] (imputed)	N
2326	chr1	228272686	228272687	rs12029076	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q42.13	NR	rs12029076-C	0.1936	5E-17				NR [9056863] (imputed)	N
2326	chr1	228272686	228272687	rs12029076	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	1q42.13	ARF1	rs12029076-G	0.78	2E-10		1.18	[1.12-1.24]	Illumina [9332516] (imputed)	N
2326	chr1	228272686	228272687	rs12029076	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	1q42.13	ARF1	rs12029076-G	0.77702	7E-11		1.2	[1.14-1.27]	Illumina [9332516] (imputed)	N
2326	chr1	228289842	228289843	rs1128456	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	1q42.13	NR	rs1128456-?	NR	4E-6		0.0251	[0.015-0.036] unit increase	Illumina [~ 7800000] (imputed)	N
2326	chr1	228326491	228326492	rs11809443	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q42.13	GUK1	rs11809443-T	0.786	8E-7		0.038	[0.022-0.054] unit decrease	Affymetrix [7947838] (imputed)	N
2327	chr1	228404304	228404305	rs180689095	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.13	NR	rs180689095-A	0.0122	5E-10	(GGH)	0.1018	NR unit increase	Illumina [1671387] (imputed)	N
2327	chr1	228450867	228450868	rs287606	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q42.13	OBSCN	rs287606-A	0.2891	3E-10		0.4386	[0.3-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2327	chr1	228453327	228453328	rs397637	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	1q42.13	OBSCN	rs397637-T	0.28	7E-10		0.8	[0.56-1.04] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
2328	chr1	228532194	228532195	rs417237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q42.13	OBSCN	rs417237-T	0.5671	6E-9		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2328	chr1	228532194	228532195	rs417237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q42.13	OBSCN	rs417237-T	0.6126	3E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2328	chr1	228551470	228551471	rs35937215	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q42.13	OBSCN	rs35937215-A	0.534894	1E-9	(-18 ms)	0.0328066	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2328	chr1	228558891	228558892	rs35186354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q42.13		rs35186354-T	NR	7E-10		0.0298	[0.02-0.039] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2328	chr1	228558951	228558952	rs113876855	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	1q42.13		rs113876855-?	NR	2E-11		0.0740239	[0.052-0.096] unit increase	NR [9800000] (imputed)	N
2328	chr1	228559993	228559994	rs500049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q42.13		rs500049-T	NR	1E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2328	chr1	228585561	228585562	rs564309	30066433	Jabbari E	2018-07-31	Ann Neurol	Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype.	Non-Richardson's syndrome vs Richardson's syndrome in progressive supranuclear palsy	130 European ancestry non-Richardson's syndrome cases, 367 European ancestry Richardson's syndrome controls	NA	1q42.13	TRIM17, TRIM11, OBSCN, HIST3H3	rs564309-?	0.19	2E-9		5.55	[3.22-10.0]	Illumina [6215948] (imputed)	N
2328	chr1	228585561	228585562	rs564309	25271088	Singh A	2014-10-01	Eur J Hum Genet	Gene by stress genome-wide interaction analysis and path analysis identify EBF1 as a cardiovascular and metabolic risk gene.	Hip circumference (psychosocial stress interaction)	2,460 European ancestry individuals, 548 Chinese ancestry individuals,   1,547 African American individuals, 1,250 Hispanic individuals	3,157 European ancestry individuals	1q42.13	TRIM11	rs564309-?	NR	4E-6	(Hispanics)			Affymetrix [528298]	N
2329	chr1	228644231	228644232	rs2147959	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	1q42.13	HIST3H2A	rs2147959-?	NR	7E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
2329	chr1	228644231	228644232	rs2147959	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	1q42.13	HIST3H2A	rs2147959-?	NR	1E-7		0.263	[0.17-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2329	chr1	228666944	228666945	rs181768270	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q42.13	RNF187	rs181768270-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
2329	chr1	228703288	228703289	rs1925714	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	1q42.13	RNF187	rs1925714-G	0.86	2E-7		2.8571	[NR]	Affymetrix [up to 4467279] (imputed)	N
2331	chr1	228880114	228880115	rs6426514	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	1q42.13	RHOU	rs6426514-A	0.06	2E-6	(Punjabi Sikhs)	1.51	[1.27 - 1.78]	Illumina [1232008] (imputed)	N
2331	chr1	228880295	228880296	rs41271473	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	1q42.13	RHOU	rs41271473-G	0.79	1E-10		1.19	[1.13-1.26]	Affymetrix, Illumina [> 10000000] (imputed)	N
2331	chr1	228887128	228887129	rs72751931	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	1q42.13	NR	rs72751931-?	NR	4E-7		0.9796	[0.64-1.32] unit increase	Affymetrix [7154205] (imputed)	N
2331	chr1	228979736	228979737	rs61824911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	1q42.13		rs61824911-G	NR	3E-45		0.164	[0.14-0.19] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
2331	chr1	228979736	228979737	rs61824911	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	1q42.13	RHOU	rs61824911-G	0.28	1E-14		1.11	[NR]	Illumina [at least 560000] (imputed)	N
2332	chr1	228989073	228989074	rs801108	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	1q42.13	RHOU	rs801108-G	0.246169	1E-71		0.2147047	[0.19-0.24] unit increase	Affymetrix [7260263] (imputed)	N
2332	chr1	228989200	228989201	rs801109	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	1q42.13		rs801109-?	NR	2E-49		1.19745	[1.17-1.22]	NR [685523]	N
2332	chr1	228989200	228989201	rs801109	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	1q42.13		rs801109-?	NR	4E-15		1.06429	[1.05-1.08]	NR [688737]	N
2332	chr1	228994387	228994388	rs12070203	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1q42.13	RP4-799G3.2	rs12070203-T	0.244285	9E-63		1.17	[1.15-1.19]	Affymetrix [7600000] (imputed)	N
2332	chr1	228994387	228994388	rs12070203	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1q42.13	RP4-799G3.2	rs12070203-T	0.260025	8E-72		1.18	[1.16-1.20]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2332	chr1	228994387	228994388	rs12070203	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		1q42.13	RHOU	rs12070203-C	NR	8E-22		1.2195122	[1.18-1.28]	Affymetrix [5734850] (imputed)	N
2332	chr1	228996621	228996622	rs801112	20844546	Adachi S	2010-09-16	J Hum Genet	Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population.	Endometriosis	696 Japanese ancestry cases, 825 Japanese ancestry controls	NA	1q42.13	RHOU	rs801112-C	0.11	5E-6		1.65	[1.33-2.05]	Affymetrix [282838]	N
2332	chr1	228997834	228997835	rs801114	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	1q42.13	RHOU	rs801114-G	0.33	8E-14		1.23	[NR]	Illumina [24988228] (imputed)	N
2332	chr1	228997834	228997835	rs801114	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	1q42.13	RHOU	rs801114-G		2E-13		1.25	[1.17-1.32]	Illumina [38500000] (imputed)	N
2332	chr1	228997834	228997835	rs801114	18849993	Stacey SN	2008-10-12	Nat Genet	Common variants on 1p36 and 1q42 are associated with cutaneous basal cell carcinoma but not with melanoma or pigmentation traits.	Basal cell carcinoma	930 European ancestry cases, 33,117 European ancestry controls	1,216 European ancestry cases, 2,844 European ancestry controls	1q42.13	RHOU	rs801114-G	0.33	6E-12		1.28	[1.19-1.37]	Illumina [304083]	N
2332	chr1	229007512	229007513	rs143925775	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	1q42.13	NR	rs143925775-C	0.9956	1E-8		1.2919898	[1.20-1.38]	Affymetrix, Illumina [NR] (imputed)	N
2332	chr1	229019147	229019148	rs11585386	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	1q42.13	RHOU, RAB4A	rs11585386-?	0.05	5E-6				Affymetrix [630309]	N
2333	chr1	229156247	229156248	rs10916409	32062564	Guo Y	2020-02-06	Neuroimage Clin	Genome-wide association study of white matter hyperintensity volume in elderly persons without dementia.	White matter hyperintensity volume	350 European ancestry elderly individuals	NA	1q42.13	ISCA1P2	rs10916409-C	0.4411	5E-6				Illumina [695203] (imputed)	N
2333	chr1	229165487	229165488	rs484947	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	1q42.13	NR	rs484947-C	0.38	2E-6		1.5625	[1.37-1.76]	NR [up to 6398204] (imputed)	N
2333	chr1	229229774	229229775	rs12089229	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	1q42.13	RHOU, RAB4A	rs12089229-?	NR	8E-6		3.448276	[1.92-6.25]	Illumina [1057565]	N
2333	chr1	229241232	229241233	rs11488711	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	1q42.13	NR	rs11488711-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.4285715	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2334	chr1	229260642	229260643	rs9283408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q42.13		rs9283408-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2334	chr1	229278333	229278334	rs76804613	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	1q42.13	NR	rs76804613-T	0.173569	4E-6				Illumina [5378266] (imputed)	N
2334	chr1	229285857	229285858	rs9793739	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	1q42.13	RHOU	rs9793739-?	NR	5E-7	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
2334	chr1	229285857	229285858	rs9793739	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	1q42.13	LOC648390, RHOU	rs9793739-?	NR	4E-6				Affymetrix, Illumina [~ 1400000] (imputed)	N
2334	chr1	229336845	229336846	rs16849553	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	1q42.13	RAB4A	rs16849553-C	0.009	7E-7	(Oz alcohol/week)	1.452	[0.95-1.95] unit increase	Affymetrix [2500000] (imputed)	N
2334	chr1	229349483	229349484	rs75507262	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants in depression	7,795 European ancestry responder cases, 1,311 European ancestry non-responder cases	NA	1q42.13	RHOU, RAB4A	rs75507262-?		1E-6		2.3255813	[1.69-3.21]	Illumina [~ 12000000] (imputed)	N
2334	chr1	229364990	229364991	rs342821	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	1q42.13	LOC102723935, LOC105373158	rs342821-?	NR	8E-6				Illumina [NR]	N
2335	chr1	229421529	229421530	rs115374932	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		RAB4A	rs115374932-?	NR	2E-8	(female)	0.503053	[NR] unit increase	Affymetrix [NR] (imputed)	N
2336	chr1	229549339	229549340	rs181829450	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus U abundance in stool	5,959 Finnish ancestry individuals	NA	1q42.13		rs181829450-G	0.024936	9E-9		0.11784	[0.078-0.158] unit increase	Illumina [7980478] (imputed)	N
2336	chr1	229566411	229566412	rs115246537	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.13		rs115246537-?	NR	3E-8				NR [NR]	N
2336	chr1	229566411	229566412	rs115246537	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	1q42.13		rs115246537-?	NR	4E-8				NR [NR]	N
2336	chr1	229572764	229572768	rs145251747	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	1q42.13	NR	rs145251747-?	0.981395	3E-6		0.429	[0.25-0.61] unit increase	NR [9260588] (imputed)	N
2336	chr1	229575763	229575764	rs10753459	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	1q42.13		rs10753459-A	0.18	2E-21		0.0982	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2336	chr1	229637502	229637503	rs754023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs754023-T	0.205499	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
2337	chr1	229642498	229642499	rs238763	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	1q42.13	NUP133	rs238763-T	0.678	5E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
2337	chr1	229664073	229664073	rs67565614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q42.13		rs67565614-CT	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2337	chr1	229668670	229668671	rs11810108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q42.13	ABCB10	rs11810108-C	0.22877	3E-9		0.015764957	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2337	chr1	229668670	229668671	rs11810108	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	1q42.13		rs11810108-T	0.746	2E-12	(MPO)	0.152	unit decrease	Affymetrix, Illumina [8509364] (imputed)	N
2337	chr1	229670963	229670964	rs2145394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q42.13		rs2145394-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q42.13		rs348330-A	0.286527345	3E-8		0.05950934	[0.039-0.08] unit decrease	Illumina [13429769] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q42.13		rs348330-A	NR	3E-15		0.0539	[0.041-0.067] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	1q42.13		rs348330-A	NR	8E-12		0.0569	[0.041-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q42.13		rs348330-A	NR	3E-19		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	1q42.13		rs348330-A	NR	3E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
2337	chr1	229672954	229672955	rs348330	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	1q42.13	ABCB10	rs348330-A	0.6276	3E-10		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
2337	chr1	229672954	229672955	rs348330	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	1q42.13	NR	rs348330-A	NR	1E-13		0.0193	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2337	chr1	229672954	229672955	rs348330	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q42.13	NR	rs348330-G	0.3693	7E-16		0.0525	[0.04-0.065] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2337	chr1	229672954	229672955	rs348330	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q42.13	NR	rs348330-G	0.4544	3E-20		0.0497	[0.039-0.06] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2337	chr1	229672954	229672955	rs348330	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	1q42.13	ABCB10	rs348330-G	0.7	4E-6		1.0526316	[1.03-1.08]	Illumina [12557761] (imputed)	N
2337	chr1	229672954	229672955	rs348330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	1q42.13		rs348330-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2337	chr1	229672954	229672955	rs348330	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q42.13	ABCB10	rs348330-G	0.3605	3E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2337	chr1	229672954	229672955	rs348330	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	1q42.13	ABCB10	rs348330-G	0.366548876273864	2E-9		0.0487	[0.033-0.065] unit increase	NR [5035015] (imputed)	N
2337	chr1	229693845	229693846	rs4148757	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	1q42.13	NR	rs4148757-C	0.210055	2E-12		0.017147	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2337	chr1	229701488	229701489	rs35421764	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q42.13	NR	rs35421764-?		6E-6				Illumina [4322238] (imputed)	N
2337	chr1	229718000	229718001	rs12049351	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		1q42.13	ABCB10, TAF5L, URB2, GALNT2GALNT2	rs12049351-C	0.79	1E-6		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2421770]	N
2337	chr1	229731833	229731834	rs10799542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q42.13		rs10799542-C	NR	8E-14		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2337	chr1	229746018	229746019	rs2273573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs2273573-T	0.567104	6E-25				Affymetrix, Illumina [24246363] (imputed)	N
2337	chr1	229746018	229746019	rs2273573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q42.13	NR	rs2273573-T	0.507758	2E-26		0.01924	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2337	chr1	229746969	229746970	rs10916527	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q42.13		rs10916527-T	0.495	8E-11		0.07	[-0.09--0.05] % decrease	Affymetrix [NR] (imputed)	N
2337	chr1	229759447	229759448	rs12065585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.13	TAF5L	rs12065585-C	0.504398	2E-10		0.014009835	[0.0097-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
2337	chr1	229759447	229759448	rs12065585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs12065585-C	0.575657	3E-10				Affymetrix, Illumina [24332387] (imputed)	N
2337	chr1	229762275	229762276	rs1467512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.13	URB2	rs1467512-G	0.507117	5E-25		0.022698166	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2337	chr1	229762275	229762276	rs1467512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q42.13	URB2	rs1467512-G	0.507215	7E-21		0.020798353	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2337	chr1	229765150	229765151	rs12130523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q42.13		rs12130523-A	NR	8E-15		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2337	chr1	229768495	229768496	rs1473720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs1473720-C	0.571587	6E-19				Affymetrix, Illumina [20825802] (imputed)	N
2338	chr1	229770363	229770364	rs59428852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.13		rs59428852-?	NR	5E-16				NR [~ 8900000] (imputed)	N
2338	chr1	229772140	229772141	rs141203811	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA	1q42.13	URB2	rs141203811-T	0.21	3E-7		0.282	[0.15-0.41] unit increase	Illumina [106489]	N
2338	chr1	229772692	229772693	rs3811473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.13	URB2	rs3811473-G	0.506841	7E-20		0.0203456	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2338	chr1	229784724	229784725	rs10799544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q42.13		rs10799544-C	NR	8E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2338	chr1	229784724	229784725	rs10799544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q42.13	URB2	rs10799544-C	0.506788	3E-15		0.017360743	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2338	chr1	229784724	229784725	rs10799544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q42.13	NR	rs10799544-C	0.507471	1E-19		0.017425	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2338	chr1	229784724	229784725	rs10799544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q42.13		rs10799544-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2338	chr1	229795713	229795714	rs11589905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q42.13		rs11589905-C	NR	1E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2338	chr1	229804994	229804995	rs10495285	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	1q42.13	KIAA0133, URB2	rs10495285-?		4E-7				Affymetrix, Illumina [1348798]	N
2338	chr1	229825050	229825051	rs6700582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.13		rs6700582-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2338	chr1	229830112	229830113	rs572888683	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	1q42.13	URB2	rs572888683-T	NR	2E-11		0.457	[0.32-0.59] unit increase	NR [11024754] (imputed)	N
2340	chr1	230056780	230056781	rs4925523	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Rubneribacter sp002159915 abundance in stool	5,959 Finnish ancestry individuals	NA	1q42.13		rs4925523-C	0.242114	2E-8		0.0534174	[0.035-0.072] unit increase	Illumina [7980478] (imputed)	N
2340	chr1	230152831	230152832	rs10864779	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	1q42.13		rs10864779-A	NR	3E-6		2.7	[1.8-4.0]	Illumina [7629332] (imputed)	N
2341	chr1	230199397	230199398	rs12040273	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	1q42.13	GALNT2	rs12040273-?	NR	6E-6	(Multiple-adjusted)			Illumina [32817]	N
2341	chr1	230219469	230219470	rs16850871	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	1q42.13	NR	rs16850871-?	NR	1E-7		0.0164	[0.01-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2341	chr1	230226385	230226386	rs7513659	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C23:0)	7,582 European ancestry individuals	NA	1q42.13	NR	rs7513659-?	NR	2E-7		0.0164	[0.01-0.022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2341	chr1	230237281	230237282	rs10746509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	1q42.13	NR	rs10746509-T	0.411631545200116	5E-9		0.0054547107	[0.0036-0.0073] unit increase	NR [NR]	N
2341	chr1	230237281	230237282	rs10746509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	1q42.13	NR	rs10746509-T	0.411631545200116	5E-9		0.008847726	[0.0059-0.0118] unit increase	NR [NR]	N
2341	chr1	230237281	230237282	rs10746509	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	1q42.13	NR	rs10746509-T	0.411631545200116	6E-9		0.0056386353	[0.0037-0.0075] unit increase	NR [NR]	N
2341	chr1	230239258	230239259	rs3811489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	1q42.13		rs3811489-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2341	chr1	230253405	230253406	rs7549029	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q42.13	NR	rs7549029-A	0.4	7E-14	(Myelin protein P0, MPZ.10615.18.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
2341	chr1	230272623	230272624	rs11807834	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q42.13	NR	rs11807834-A	NR	8E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2341	chr1	230279409	230279410	rs4846904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs4846904-?	NR	4E-16	(TG_PG)	0.0681811	NR unit increase	Illumina [609262]	N
2341	chr1	230279409	230279410	rs4846904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs4846904-?	NR	4E-8	(TG_PG)	0.067326136	NR unit increase	Illumina [609262]	N
2341	chr1	230279581	230279582	rs4846905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q42.13	NR	rs4846905-G	NR	4E-47		0.0436	[0.038-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
2341	chr1	230279581	230279582	rs4846905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs4846905-G	NR	8E-90		0.0635	[0.057-0.07] unit increase	Affymetrix [9000000] (imputed)	N
2341	chr1	230279581	230279582	rs4846905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q42.13	NR	rs4846905-G	NR	1E-11		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2341	chr1	230279581	230279582	rs4846905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.13	NR	rs4846905-G	NR	2E-71		0.0566	[0.05-0.063] unit increase	Affymetrix [9000000] (imputed)	N
2341	chr1	230280197	230280198	rs2144298	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	1q42.13	GALNT2	rs2144298-T	0.2	7E-6		0.06	[0.04-0.08] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
2341	chr1	230281155	230281156	rs4846835	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	1q42.13	GALNT2	rs4846835-A	0.1984	4E-6	(Complete)	0.4595	[0.26-0.66] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2341	chr1	230281155	230281156	rs4846835	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	1q42.13	GALNT2	rs4846835-A	0.1959	2E-6	(Primary)	0.3966	[0.23-0.56] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2341	chr1	230283505	230283506	rs6541297	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	1q42.13	GALNT2	rs6541297-A	0.78	7E-6		0.035	[0.019-0.051] unit decrease	Affymetrix [7947838] (imputed)	N
2341	chr1	230287127	230287128	rs1998064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q42.13	NR	rs1998064-G	NR	3E-24		0.0283	[0.023-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2341	chr1	230287127	230287128	rs1998064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs1998064-G	NR	3E-38		0.0375	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
2341	chr1	230287127	230287128	rs1998064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q42.13	NR	rs1998064-G	NR	8E-11		0.0181	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2341	chr1	230287127	230287128	rs1998064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.13	NR	rs1998064-G	NR	1E-29		0.0329	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
2341	chr1	230291440	230291441	rs4846910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q42.13	GALNT2	rs4846910-A	0.808707	1E-12		0.020205585	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2341	chr1	230291867	230291868	rs2352723	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2352723-?	NR	5E-10	(ApoB)	0.039710786	NR unit increase	Illumina [609262]	N
2342	chr1	230293529	230293530	rs4631704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	1q42.13		rs4631704-C	0.391678	6E-14		0.0312147	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230293529	230293530	rs4631704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q42.13		rs4631704-C	0.391677	1E-10		0.0272658	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2342	chr1	230293529	230293530	rs4631704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs4631704-C	0.406829	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
2342	chr1	230293529	230293530	rs4631704	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q42.13	GALNT2	rs4631704-C		3E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2342	chr1	230293529	230293530	rs4631704	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	1q42.13	GALNT2	rs4631704-?	NR	2E-19		0.008414	[0.0063-0.0105] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2342	chr1	230293529	230293530	rs4631704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q42.13	GALNT2	rs4631704-T	0.6104	2E-10		0.02382391	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2342	chr1	230294714	230294715	rs4846913	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K4	5,365 Icelandic ancestry individuals	NA	1q42.13		rs4846913-C	0.3928	3E-59		0.304926	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
2342	chr1	230294714	230294715	rs4846913	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	1q42.13		rs4846913-?	NR	2E-10		0.0131835	[0.0091-0.0173] unit decrease	NR [6912294] (imputed)	N
2342	chr1	230294714	230294715	rs4846913	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	1q42.13	GALNT2	rs4846913-?	NR	2E-18		0.0082	[0.0062-0.0102] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2342	chr1	230294714	230294715	rs4846913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.13		rs4846913-?	NR	1E-48				NR [~ 8900000] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRP1	5,346 Icelandic ancestry individuals	NA	1q42.13		rs2144300-C	0.3929	2E-18		0.151189	[0.12-0.18] unit decrease	Illumina [7506463] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	1q42.13		rs2144300-T	0.188619	1E-8		0.0341688	[0.022-0.046] unit increase	Illumina [13465896] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q42.13	GALNT2	rs2144300-?		8E-19		0.0376	[0.029-0.046] unit increase	Illumina [31500000] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	7E-12	(S_VLDL_PL)	0.05062675	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	7E-11	(VLDL_C)	0.04229964	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	7E-11	(M_VLDL_CE)	0.044803772	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	7E-10	(M_HDL_PL)	0.0738682	NR unit decrease	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	6E-13	(M_VLDL_P)	0.05254232	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	5E-14	(M_VLDL_L)	0.06672028	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	4E-10	(VLDL_D)	0.051842943	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	3E-13	(L_VLDL_FC)	0.064418845	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	3E-11	(M_VLDL_TG)	0.04455742	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-14	(S_VLDL_TG)	0.06865912	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-14	(L_VLDL_PL)	0.05893172	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-11	(L_VLDL_C)	0.044764526	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-10	(L_VLDL_CE)	0.040656675	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	1E-9	(S_HDL_PL)	0.06579754	NR unit decrease	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	1E-14	(M_VLDL_FC)	0.06457399	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	1E-14	(M_VLDL_C)	0.061597664	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	6E-6	(M_VLDL_L)	0.06635871	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	4E-7	(S_VLDL_TG)	0.06345027	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	3E-8	(M_HDL_PL)	0.06983734	NR unit decrease	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	3E-6	(M_VLDL_P)	0.058063053	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-6	(S_HDL_PL)	0.058541484	NR unit decrease	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2144300-?	NR	2E-6	(M_VLDL_TG)	0.05976349	NR unit increase	Illumina [609262]	N
2342	chr1	230294915	230294916	rs2144300	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs2144300-C	NR	5E-21		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs2144300-C	0.397	1E-17	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs2144300-C	NR	7E-34		0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs2144300-C	0.397	7E-29	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	1q42.13	GALNT2	rs2144300-?	NR	4E-8		0.02985	[0.019-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	1q42.13	GALNT2	rs2144300-?	NR	4E-8		0.03663	[0.024-0.05] unit increase novel	Illumina [6108953] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1q42.13	GALNT2	rs2144300-T	0.18	5E-8	(Asian initial, BMI adjusted)	0.056	[0.036-0.076] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		1q42.13	GALNT2	rs2144300-C	0.39	3E-6		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [2397181]	N
2342	chr1	230294915	230294916	rs2144300	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	1q42.13	GALNT2	rs2144300-C	0.40	8E-7		4.25	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
2342	chr1	230294915	230294916	rs2144300	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	1q42.13	GALNT2	rs2144300-T	0.6	3E-14		1.11	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-11		0.0273979	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-11		0.0273979	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-35		0.0494131	[0.042-0.057] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-35		0.0494131	[0.042-0.057] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-18		0.0361023	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-18		0.0361023	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-28		0.0443826	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-28		0.0443826	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-26		0.0433968	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-26		0.0433968	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.0366359	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.0366359	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	7E-24		0.0413068	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	7E-24		0.0413068	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	9E-31		0.0476063	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	9E-31		0.0476063	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-25		0.0421998	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-25		0.0421998	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-19		0.0374194	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-19		0.0374194	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-25		0.0426025	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-25		0.0426025	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-24		0.0417739	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-24		0.0417739	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-24		0.041036	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-24		0.041036	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-28		0.0447004	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-28		0.0447004	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-20		0.0387709	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-20		0.0387709	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-15		0.0332426	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-15		0.0332426	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	7E-9		0.0244967	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	7E-9		0.0244967	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	9E-27		0.0437271	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	9E-27		0.0437271	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-21		0.0389604	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-21		0.0389604	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	1E-15		0.0325946	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	1E-15		0.0325946	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	2E-14		0.0313269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	2E-14		0.0313269	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-26		0.0439692	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-26		0.0439692	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-28		0.0446423	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-28		0.0446423	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-14		0.0317018	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-14		0.0317018	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-11		0.0280048	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-11		0.0280048	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-9		0.0252327	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-9		0.0252327	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-29		0.0461136	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-29		0.0461136	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.0374594	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.0374594	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	1E-13		0.0308345	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	1E-13		0.0308345	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-26		0.0437469	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-26		0.0437469	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-29		0.0458619	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-29		0.0458619	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-16		0.0339427	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	6E-16		0.0339427	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	7E-21		0.0376247	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397328	7E-21		0.0376247	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-29		0.0459192	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-29		0.0459192	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-23		0.0413267	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-23		0.0413267	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-12		0.0299573	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-12		0.0299573	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-29		0.045545	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-29		0.045545	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-14		0.0320562	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-14		0.0320562	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-24		0.0422687	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-24		0.0422687	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-14		0.0322862	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-14		0.0322862	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-11		0.0286319	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	1E-11		0.0286319	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-9		0.0244216	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	8E-9		0.0244216	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.037379	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	3E-19		0.037379	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-26		0.0436141	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	4E-26		0.0436141	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-12		0.0291043	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	5E-12		0.0291043	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-24		0.0421168	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295076	230295076	rs764992666	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs764992666-TCTTAAAGTGTTCAGCACTCCC,rs764992666-TCTTAAAGTGTTCAGCACTCCC	0.397336	2E-24		0.0421168	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295078	230295099	rs6143660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	1q42.13		rs6143660-T	0.192844	9E-10		0.0310342	[0.021-0.041] unit decrease	Illumina [13471903] (imputed)	N
2342	chr1	230295244	230295245	rs12065546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs12065546-C	0.148217	3E-9		0.0342544	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230295306	230295307	rs17315646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q42.13		rs17315646-G	NR	4E-24		0.0207	[0.017-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2342	chr1	230295306	230295307	rs17315646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q42.13		rs17315646-G	NR	1E-10		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
2342	chr1	230295306	230295307	rs17315646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs17315646-G	0.51549	3E-14				Affymetrix, Illumina [21126107] (imputed)	N
2342	chr1	230295306	230295307	rs17315646	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q42.13	GALNT2	rs17315646-G	0.592	8E-27	(Dual specificity mitogen-activated protein kinase kinase 4, MAP2K4.5242.37.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	1q42.13		rs4846914-G	0.4	2E-6		3.57	[2.10-5.04] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	1q42.13		rs4846914-G	0.4	4E-8		0.7	[0.45-0.95] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	1q42.13		rs4846914-A	0.522	1E-7		0.0131	[0.0082-0.018] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	1q42.13		rs4846914-A	0.6066	1E-13	(EA)	0.0099	[0.0074-0.0124] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q42.13	GALNT2	rs4846914-A	0.5456	4E-48		0.0409	[0.035-0.046] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846914-G	NR	3E-20		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846914-G	0.397	1E-17	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846914-G	NR	3E-31		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846914-G	0.397	9E-28	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	1q42.13	GALNT2	rs4846914-A	0.584	8E-31	(Trans-ethnic initial)	0.0401	[0.033-0.047] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	1q42.13	GALNT2	rs4846914-A	0.584	2E-44	(Trans-ethnic initial)	0.0479	[0.041-0.055] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.13	GALNT2	rs4846914-G	0.41	7E-31		0.04	[NR] mg/dL increase	NR [NR] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.13	GALNT2	rs4846914-G	0.41	4E-41		0.048	[NR] unit decrease	NR [NR] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	1q42.13	GALNT2	rs4846914-G	0.39	2E-14		2.76	[2.02-3.5] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	1q42.13	GALNT2	rs4846914-G	0.4	4E-21		0.61	[0.47-0.75] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	1q42.13	GALNT2	rs4846914-G	0.40	4E-8		0.05	[0.01-0.09] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2342	chr1	230295690	230295691	rs4846914	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	1q42.13	GALNT2	rs4846914-G	0.40	7E-15		0.08	[0.06-0.10] unit increase	Affymetrix [389878]	N
2342	chr1	230295690	230295691	rs4846914	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	1q42.13	GALNT2	rs4846914-G	0.40	2E-13		0.07	[0.05-0.09] unit decrease	Affymetrix [389878]	N
2342	chr1	230295788	230295789	rs10127775	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs10127775-A	0.394401	5E-8		0.0230182	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	1q42.13		rs10127775-A	0.394466	2E-13		0.0309459	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.13	GALNT2	rs10127775-T	0.605986	1E-18		0.023241967	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q42.13	GALNT2	rs10127775-T	0.606226	5E-23		0.02273196	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q42.13	GALNT2	rs10127775-T	0.606211	2E-32		0.027249206	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.13	GALNT2	rs10127775-T	0.606166	2E-25		0.023469388	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q42.13	GALNT2	rs10127775-A	0.606048	2E-14		0.016314	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q42.13	NR	rs10127775-T	0.6053	5E-15		0.016058	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q42.13	GALNT2	rs10127775-A	0.393813	6E-28		0.0232658	[0.019-0.027] unit increase	Affymetrix [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	1q42.13	GALNT2	rs10127775-?	NR	6E-73		0.0484	[0.044-0.053] unit increase	Affymetrix [5701386] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	1q42.13	NR	rs10127775-T	0.604643	3E-9		0.011801	[0.0079-0.0157] unit increase	Affymetrix [16668957] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.13	GALNT2	rs10127775-T	NR	9E-31				Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.13	GALNT2	rs10127775-T	NR	1E-24	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	9E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	2E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	1E-32				Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	9E-13	(EA)	0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	1E-17		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	5E-6	(EA)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	4E-6	(Asian)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	4E-12		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.13	GALNT2	rs10127775-T	NR	9E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.13	GALNT2	rs10127775-T	NR	5E-50	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.13	GALNT2	rs10127775-T	NR	1E-58				Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	9E-58				Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	6E-48	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.13	GALNT2	rs10127775-T	NR	2E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	3E-17	(EA)	0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	2E-25		0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	1E-7	(Asian)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	7E-9	(EA)	0.009249	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	2E-7	(Asian)	0.008831	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.13	GALNT2	rs10127775-T	NR	1E-16		0.009115	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2342	chr1	230295788	230295789	rs10127775	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q42.13	Intergenic	rs10127775-A	0.4143145	7E-13	(EA, Dual specificity mitogen-activated protein kinase kinase 4)	0.3248	[0.24-0.41] unit increase	Affymetrix [509946]	N
2342	chr1	230295788	230295789	rs10127775	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	1q42.13	GALNT2	rs10127775-?	0.44	1E-9				Illumina [~ 2000000] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q42.13		rs10864726-C	0.394529	2E-37		0.0520626	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q42.13		rs10864726-C	0.394529	3E-13		0.0308786	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q42.13		rs10864726-C	0.394529	2E-28		0.0455404	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs10864726-T	0.513963	9E-42				Affymetrix, Illumina [24588908] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q42.13	NR	rs10864726-T	0.604907	6E-44		0.025886	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs10864726-T	0.514831	3E-14				Affymetrix, Illumina [24653286] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	1q42.13	NR	rs10864726-T	0.5956	1E-25	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
2342	chr1	230296152	230296153	rs10864726	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		1q42.13	GALNT2	rs10864726-?	NR	1E-8		0.0059	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
2342	chr1	230296469	230296470	rs4846915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	1q42.13		rs4846915-C	0.147982	8E-9		0.0333683	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
2342	chr1	230296469	230296470	rs4846915	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K4	5,365 Icelandic ancestry individuals	NA	1q42.13		rs4846915-C	0.1286	7E-43		0.382348	[0.33-0.44] unit increase	Illumina [7506463] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	5E-14		0.0312068	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	7E-15		0.0320216	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	1E-24		0.0416207	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	1E-13		0.02997	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	1E-9		0.0244723	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	9E-15		0.0329377	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281721-C	0.387356	8E-17		0.0335491	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL58	5,353 Icelandic ancestry individuals	NA	1q42.13		rs2281721-C	0.3712	9E-21		0.175223	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	1q42.13		rs2281721-T	NR	2E-89		0.0429	[0.039-0.047] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q42.13	GALNT2	rs2281721-?		2E-22		0.0467	[0.037-0.056] unit decrease	Illumina [31500000] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q42.13	GALNT2	rs2281721-T	0.613085	2E-26		0.024366304	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	1q42.13	GALNT2	rs2281721-C	0.38621	1E-34		0.0820747	[0.069-0.095] unit increase	Affymetrix [9463307] (imputed)	N
2342	chr1	230297135	230297136	rs2281721	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q42.13	GALNT2	rs2281721-T	0.5522	1E-40		0.0377	[0.032-0.043] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281719-C	0.387647	8E-15		0.0295629	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281719-C	0.387647	1E-17		0.0325194	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281719-C	0.387647	6E-15		0.0296066	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q42.13		rs2281719-C	0.387647	2E-13		0.0282021	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.13	NR	rs2281719-C	0.403618	7E-54				Affymetrix, Illumina [22063850] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q42.13	NR	rs2281719-C	0.387967	1E-56		0.03058	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2342	chr1	230297658	230297659	rs2281719	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q42.13	GALNT2	rs2281719-T	0.5775	3E-7		0.0289	[0.018-0.04] unit decrease	NR [8041861] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q42.13		rs2281718-T	NR	3E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q42.13		rs2281718-T	NR	9E-148		0.0605	[0.056-0.065] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q42.13	NR	rs2281718-T	0.611807	9E-17		0.015657	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q42.13	GALNT2	rs2281718-A	0.387428	9E-205		0.0596767	[0.056-0.064] unit decrease	Affymetrix [NR] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q42.13	GALNT2	rs2281718-A	0.38757	1E-155		0.0534923	[0.05-0.057] unit decrease	Affymetrix [NR] (imputed)	N
2342	chr1	230297777	230297778	rs2281718	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1q42.13	GALNT2	rs2281718-?	NR	3E-16		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2342	chr1	230298284	230298285	rs2103827	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	1q42.13		rs2103827-T	0.155476	2E-8		0.0323651	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
2342	chr1	230299948	230299949	rs10779835	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q42.13	GALNT2	rs10779835-T	0.387126	1E-8		0.00800958	[0.0053-0.0108] unit increase	Affymetrix [12370749]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	6E-10	(XL_VLDL_P)	0.04954545	NR unit increase	Illumina [609262]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	2E-13	(VLDL_TG)	0.061087158	NR unit increase	Illumina [609262]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	2E-13	(L_VLDL_P)	0.056946356	NR unit increase	Illumina [609262]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	2E-10	(XL_VLDL_TG)	0.05129821	NR unit increase	Illumina [609262]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	7E-6	(L_VLDL_P)	0.056261968	NR unit increase	Illumina [609262]	N
2342	chr1	230299948	230299949	rs10779835	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10779835-?	NR	1E-6	(VLDL_TG)	0.06053398	NR unit increase	Illumina [609262]	N
2342	chr1	230300480	230300481	rs11122449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1q42.13		rs11122449-C	0.255226	7E-11		0.0290803	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230300480	230300481	rs11122449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	1q42.13		rs11122449-C	0.255226	4E-10		0.0280371	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230300480	230300481	rs11122449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	1q42.13		rs11122449-C	0.255226	7E-13		0.0318714	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230300480	230300481	rs11122449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	1q42.13		rs11122449-C	0.255253	1E-9		0.0260066	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230300480	230300481	rs11122449	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q42.13	GALNT2	rs11122449-T	0.7446	6E-20		0.03728932	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
2342	chr1	230301775	230301776	rs2296065	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs2296065-?	NR	6E-13	(L_VLDL_L)	0.05720389	NR unit increase	Illumina [609262]	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	7E-29		0.0446027	[0.037-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	9E-10		0.0250387	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	3E-16		0.0326032	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	5E-18		0.0344291	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388517	4E-44		0.0547034	[0.047-0.062] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	1E-16		0.0332726	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	3E-14		0.03054	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	5E-29		0.0449235	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388517	4E-8		0.0221396	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	2E-29		0.0417258	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	4E-40		0.0525787	[0.045-0.06] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	6E-20		0.0362584	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	2E-30		0.042931	[0.036-0.05] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	1E-35		0.0498163	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	7E-19		0.0352826	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	1E-30		0.0428733	[0.036-0.05] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs11122450-T	0.388529	5E-33		0.0472849	[0.04-0.055] unit increase	NR [11722792] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1q42.13		rs11122450-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q42.13		rs11122450-T	0.387	3E-8				Affymetrix [10369434] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	1q42.13		rs11122450-T	0.39	3E-131		0.048	mmol/L increase	NR [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	1q42.13		rs11122450-T	0.39	1E-154				NR [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	1q42.13		rs11122450-T	0.39	5E-212		0.058	mmol/L decrease	NR [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	1q42.13		rs11122450-T	0.39	6E-11		0.01	% increase	NR [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	1q42.13		rs11122450-T	0.39	3E-9		0.012	U/L increase	NR [NR] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q42.13	GALNT2	rs11122450-G	0.611694	2E-11		0.015272174	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2342	chr1	230301810	230301811	rs11122450	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q42.13	GALNT2	rs11122450-T	0.388269	1E-123		0.0482838	[0.044-0.052] unit increase	Affymetrix [NR] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q42.13		rs59484402-C	0.3885	3E-9		0.0245529	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	6E-24		0.0406168	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	7E-17		0.0344189	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	3E-20		0.0376968	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	1E-30		0.0478175	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	4E-18		0.0358404	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	1E-20		0.0384907	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388302	9E-27		0.0439539	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388302	3E-11		0.027361	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388302	8E-34		0.0497329	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388313	2E-25		0.0432408	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	1E-13		0.0320329	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	1E-24		0.042011	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q42.13		rs59484402-C	0.3885	9E-10		0.0254225	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	1E-13		0.0307092	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	9E-20		0.03714	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	2E-8		0.0225986	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	3E-22		0.0400333	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	3E-23		0.0408898	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q42.13		rs59484402-C	0.3885	2E-15		0.0325154	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	3E-11		0.0275431	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388313	2E-14		0.0313991	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	2E-26		0.0439392	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	1q42.13		rs59484402-C	0.3885	5E-15		0.0320892	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	4E-28		0.0456968	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	1q42.13		rs59484402-C	0.388312	5E-25		0.042584	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2342	chr1	230302838	230302838	rs59484402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q42.13	NR	rs59484402-I	0.61181	1E-14		0.015757	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2342	chr1	230303149	230303150	rs10779836	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q42.13		rs10779836-C	0.197	2E-11				Affymetrix [10369434] (imputed)	N
2342	chr1	230303511	230303512	rs6672758	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	1q42.13		rs6672758-C	0.199128	3E-11		0.016	[0.01-0.022] unit decrease	NR [7250403] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs1546954-T	0.387344	6E-34		0.0450802	[0.038-0.052] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q42.13		rs1546954-T	0.387344	6E-25		0.0401197	[0.033-0.048] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q42.13		rs1546954-T	0.387344	4E-20		0.0344953	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs1546954-T	0.387344	3E-30		0.042444	[0.035-0.05] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	1q42.13		rs1546954-T	0.387344	1E-28		0.0416369	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230303847	230303848	rs1546954	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q42.13	GALNT2	rs1546954-G	NR	6E-14		0.0300215	[0.022-0.038] unit increase	Affymetrix [16832071] (imputed)	N
2342	chr1	230304050	230304051	rs11122454	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	1q42.13	GALNT2	rs11122454-?	NR	8E-15		0.01716	[0.013-0.021] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	3E-38		0.0507414	[0.043-0.058] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	8E-39		0.0495144	[0.042-0.057] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386754	3E-8		0.0220486	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	2E-37		0.052747	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	2E-37		0.0476533	[0.04-0.055] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	5E-41		0.0512596	[0.044-0.059] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	4E-38		0.0488588	[0.041-0.056] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	2E-25		0.0391352	[0.032-0.046] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	6E-38		0.0495619	[0.042-0.057] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	2E-32		0.0444331	[0.037-0.052] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	6E-39		0.0508865	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	3E-41		0.0526721	[0.045-0.06] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	6E-39		0.0496697	[0.042-0.057] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	4E-41		0.052312	[0.045-0.06] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304351	230304352	rs4846921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q42.13		rs4846921-G	0.386768	3E-34		0.0473049	[0.04-0.055] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q42.13	GALNT2	rs10864728-G	0.601	5E-14	(Neuropilin-1, NRP1.3214.3.2)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs10864728-A	NR	1E-20		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs10864728-A	0.387	5E-19	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs10864728-A	NR	2E-29		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs10864728-A	0.387	8E-29	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230304913	230304914	rs10864728	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	1q42.13	GALNT2	rs10864728-A	0.39	5E-16		0.052	[0.04-0.064] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2342	chr1	230304929	230304930	rs11122455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	1q42.13		rs11122455-C	0.386755	3E-25		0.0412564	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230304987	230304988	rs10489615	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	1q42.13		rs10489615-A	0.386746	5E-8		0.0220163	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	3E-14	(L_VLDL_TG)	0.056456722	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	3E-10	(S_VLDL_FC)	0.052427895	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	2E-14	(M_VLDL_PL)	0.05604893	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	1E-13	(S_VLDL_P)	0.057127267	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	1E-12	(S_VLDL_L)	0.05642825	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	1q42.13	GALNT2	rs10489615-?	NR	5E-6	(L_VLDL_TG)	0.05701216	NR unit increase	Illumina [609262]	N
2342	chr1	230304987	230304988	rs10489615	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		1q42.13	GALNT2	rs10489615-?	NR	8E-7		0.0052	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
2342	chr1	230304987	230304988	rs10489615	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	1q42.13	GALNT2	rs10489615-G	0.60	4E-9		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	1q42.13		rs1321257-G	0.386777	8E-20		0.0363555	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	1q42.13		rs1321257-G	0.386777	3E-37		0.0504699	[0.043-0.058] unit decrease	NR [11722792] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs1321257-G	NR	1E-20		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs1321257-G	0.387	5E-19	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs1321257-G	NR	2E-29		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230305311	230305312	rs1321257	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs1321257-G	0.387	9E-29	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230305476	230305477	rs966333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.13	GALNT2	rs966333-C	0.851627	2E-11		0.02440082	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	5E-12		0.0300771	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	5E-12		0.0300411	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	5E-12		0.0301441	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	7E-9		0.0251884	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	7E-9		0.0253048	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1q42.13		rs4846922-T	0.345301	2E-9		0.0262716	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
2342	chr1	230307181	230307182	rs4846922	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	1q42.13	GALNT2	rs4846922-T	0.39	4E-8	(HDL)	0.08	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
2342	chr1	230307221	230307222	rs4846923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846923-T	NR	8E-21		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230307221	230307222	rs4846923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846923-T	0.291	8E-21	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230307221	230307222	rs4846923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846923-T	NR	5E-32		0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230307221	230307222	rs4846923	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.13	NR	rs4846923-T	0.291	6E-32	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2342	chr1	230307221	230307222	rs4846923	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	1q42.13	GALNT2	rs4846923-G	0.71	1E-16		0.055	[0.041-0.069] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2342	chr1	230307548	230307549	rs6541300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q42.13	NR	rs6541300-C	NR	5E-10		0.035	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
2342	chr1	230307548	230307549	rs6541300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs6541300-C	NR	7E-10		0.0362	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230309618	230309619	rs590820	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	1q42.13	GALNT2	rs590820-G	0.44	2E-9	(Free cholesterol in medium HDL)	0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
2342	chr1	230310068	230310069	rs619899	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	1q42.13	GALNT2	rs619899-?	NR	6E-7		4.993	NR unit decrease	Illumina [up to 1520000] (imputed)	N
2342	chr1	230327567	230327568	rs10779837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs10779837-T	NR	3E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230351828	230351829	rs6703306	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar pliability	665 European ancestry individuals	NA	1q42.13	GALNT2	rs6703306-G	0.02481	3E-6		0.8324	[0.49-1.18] unit increase	Illumina [298150]	N
2342	chr1	230379952	230379953	rs16851199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q42.13	NR	rs16851199-G	NR	3E-10		0.0482	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
2342	chr1	230379952	230379953	rs16851199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs16851199-G	NR	2E-15		0.0638	[0.048-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230379952	230379953	rs16851199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.13	NR	rs16851199-G	NR	3E-14		0.061	[0.045-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230388988	230388989	rs3761944	23303382	Hong KW	2013-01-10	J Hum Genet	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	1q42.13	GALNT2	rs3761944-C	0.224	8E-6	(ALB/GLB)	0.016	[0.0082-0.0238] unit increase	Affymetrix [290659]	N
2342	chr1	230392724	230392725	rs78988790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs78988790-A	NR	7E-17		0.0565	[0.043-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230392724	230392725	rs78988790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.13	NR	rs78988790-A	NR	7E-13		0.0487	[0.035-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230410810	230410811	rs114052230	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	1q42.13	GALNT2	rs114052230-C	0.833288	4E-13		0.0200267	[0.015-0.025] unit increase	Affymetrix [NR] (imputed)	N
2342	chr1	230413312	230413313	rs9432148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	1q42.13	NR	rs9432148-C	NR	7E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2342	chr1	230413312	230413313	rs9432148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.13	NR	rs9432148-C	NR	1E-14		0.0221	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2342	chr1	230413312	230413313	rs9432148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.13	NR	rs9432148-C	NR	2E-10		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2342	chr1	230416398	230416399	rs1043897	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q42.13	GALNT2	rs1043897-G	0.584618	9E-25		0.0198683	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
2342	chr1	230416398	230416399	rs1043897	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q42.13	GALNT2	rs1043897-G	0.584676	6E-18		0.0171627	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
2342	chr1	230416398	230416399	rs1043897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.13		rs1043897-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2342	chr1	230417663	230417664	rs7022	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q42.13	GALNT2	rs7022-G	0.311	3E-14	(Myelin protein P0, MPZ.10615.18.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
2343	chr1	230425089	230425090	rs16851421	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	1q42.13	GALNT2	rs16851421-G	0.3271	8E-6		0.2489	[0.14-0.36] unit decrease	Illumina [8203257] (imputed)	N
2343	chr1	230450967	230450968	rs10779842	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	1q42.13	intergenic	rs10779842-A	0.04	6E-6	(male)	2.96	[1.69-4.23] unit increase	Illumina [6380737] (imputed)	N
2343	chr1	230451848	230451849	rs147121532	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	1q42.13	NR	rs147121532-?	NR	4E-6	(EA)	4.43	[2.35-8.33]	Affymetrix, Illumina [~ 6000000] (imputed)	N
2343	chr1	230542200	230542201	rs11122508	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	1q42.13	PGBD5	rs11122508-G	0.55	5E-6		0.2	unit increase	Illumina [5600000] (imputed)	N
2344	chr1	230644926	230644927	rs740494	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	1q42.2	PGBD5	rs740494-G	0.12	9E-7		2.17		Affymetrix [at least 730985] (imputed)	N
2344	chr1	230674825	230674826	rs701157	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	1q42.2	LOC729257	rs701157-C	0.45	4E-6				Perlegen [378332]	N
2344	chr1	230682812	230682813	rs853444	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Basal ganglia growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	1q42.2	LINC01737, PGBD5	rs853444-?	NR	9E-6				Illumina [at least 653030]	N
2345	chr1	230688642	230688643	rs12064669	27132594	Mbarek H	2016-05-05	Am J Hum Genet	Identification of Common Genetic Variants Influencing Spontaneous Dizygotic Twinning and Female Fertility.	Spontaneous dizygotic twinning	1,980 European ancestry mothers of spontaneous dizygotic twins, 12,953 European ancestry controls	3,597 Icelandic ancestry mothers of spontaneous dizygotic twins, 297,348 Icelandic ancestry controls	1q42.2	intergenic	rs12064669-C	0.07	2E-7		1.01	0.89-1.13	Affymetrix, Illumina, Perlegen [at least 7903594] (imputed)	N
2345	chr1	230710195	230710196	rs73108011	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q42.2	NR	rs73108011-?		5E-6				Illumina [4322238] (imputed)	N
2345	chr1	230754221	230754222	rs9651127	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Interleukin-6 gene expression levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	1q42.2	COG2	rs9651127-G	0.65	1E-8		1.495	[0.98-2.01] unit decrease	Illumina [10307610] (imputed)	N
2345	chr1	230779265	230779266	rs11122565	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	1q42.2	AGT, C1orf198, CAPN9, COG2, LOC101927604, PGBD5	rs11122565-T	0.21	8E-6		0.49	[0.27-0.71] unit decrease	Illumina [at least 4710000] (imputed)	N
2345	chr1	230792241	230792242	rs12566217	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	1q42.2		rs12566217-G	0.144	2E-6		2.0		Illumina [5409651] (imputed)	N
2345	chr1	230796325	230796326	rs3736983	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	1q42.2	NR	rs3736983-G	NR	2E-6		0.023987561	[0.014-0.034] unit decrease	Illumina [NR] (imputed)	N
2346	chr1	230837043	230837044	rs943580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q42.2		rs943580-?	NR	4E-16				NR [~ 8900000] (imputed)	N
2346	chr1	230837179	230837180	rs11122573	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	1q42.2	NR	rs11122573-T	0.06	2E-8	(EA)	1.92	[1.53-2.42]	Affymetrix, Illumina [~ 6000000] (imputed)	N
2346	chr1	230843713	230843714	rs3789670	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGT	5,345 Icelandic ancestry individuals	NA	1q42.2		rs3789670-T	0.08982	2E-28		0.329329	[0.27-0.39] unit increase	Illumina [7506463] (imputed)	N
2346	chr1	230844272	230844273	rs2493133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	1q42.2		rs2493133-C	NR	3E-10		0.0335	[0.023-0.044] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2346	chr1	230844272	230844273	rs2493133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q42.2		rs2493133-C	NR	4E-14		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2346	chr1	230844309	230844310	rs2478543	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	1q42.2	AGT	rs2478543-C	0.403731	9E-10		0.03772458	[0.026-0.05] unit increase	Affymetrix [7288503] (imputed)	N
2346	chr1	230844605	230844606	rs11568055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGT	5,345 Icelandic ancestry individuals	NA	1q42.2		rs11568055-T	0.05658	4E-11		0.243595	[0.17-0.32] unit increase	Illumina [7506463] (imputed)	N
2346	chr1	230844771	230844772	rs2478539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRG2	5,361 Icelandic ancestry individuals	NA	1q42.2		rs2478539-T	0.4189	3E-39		0.246284	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
2346	chr1	230844771	230844772	rs2478539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	1q42.2		rs2478539-T	NR	6E-14		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2346	chr1	230844771	230844772	rs2478539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q42.2		rs2478539-T	NR	2E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2346	chr1	230844771	230844772	rs2478539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q42.2		rs2478539-?	NR	3E-30				NR [~ 8900000] (imputed)	N
2346	chr1	230845793	230845794	rs699	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q42.2	AGT	rs699-A	0.5711	6E-26		0.2918	[0.24-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
2346	chr1	230845793	230845794	rs699	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	1q42.2	AGT	rs699-A	0.5795	2E-8		0.036	[0.023-0.049] unit decrease	NR [8041861] (imputed)	N
2346	chr1	230845793	230845794	rs699	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	1q42.2	AGT	rs699-A	0.481224780432349	4E-12		0.32885453	[0.24-0.42] unit decrease	Illumina [247039]	N
2346	chr1	230847272	230847273	rs11568050	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	1q42.2	NR	rs11568050-?	NR	4E-6		1.8782	[1.61-2.15]	Illumina [NR] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1q42.2	AGT	rs2004776-T	0.24	9E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1q42.2	AGT	rs2004776-?	NR	3E-10				Affymetrix, Illumina [18800000] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	1q42.2	AGT	rs2004776-?		2E-14				Affymetrix, Illumina [18800000] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	1q42.2	AGT	rs2004776-T	0.237	9E-7	(EA, initial)	0.25	[0.15-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.2	AGT	rs2004776-C		1E-9		0.265	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2346	chr1	230848701	230848702	rs2004776	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.2	AGT	rs2004776-C		2E-11		0.18	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2346	chr1	230849358	230849359	rs2493134	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1q42.2	AGT	rs2493134-T	0.579	1E-12		0.413	[0.3-0.53] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
2346	chr1	230849358	230849359	rs2493134	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	1q42.2	AGT	rs2493134-T	0.579	1E-14		0.275	[0.2-0.35] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
2346	chr1	230849481	230849482	rs3789678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q42.2	AGT	rs3789678-C	0.90828125	2E-16	(AGT, 3484_60_2)	0.3323149	[0.25-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
2346	chr1	230851427	230851428	rs2493135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	1q42.2		rs2493135-G	NR	2E-8		0.0406	[0.026-0.055] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2346	chr1	230851427	230851428	rs2493135	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	1q42.2	AGT, CAPN9	rs2493135-?	NR	2E-8		0.0291209	[0.019-0.039] unit increase	Illumina [4804024] (imputed)	N
2346	chr1	230851535	230851536	rs2493136	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	1q42.2	RP11-99J16__A.2	rs2493136-T	0.40279	8E-10		0.051549222	[0.035-0.068] unit increase	Affymetrix [7288503] (imputed)	N
2346	chr1	230852115	230852116	rs2493137	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	1q42.2	NR	rs2493137-?	NR	4E-9	(Angiotensinogen)			Illumina [514227]	N
2346	chr1	230852268	230852269	rs1977412	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with memory domain impairment	Up to 1,107 European ancestry cases, 3,447 European ancestry controls	NA	1q42.2	NR	rs1977412-C	0.14	6E-7		1.5625	[1.39-1.74]	NR [up to 6398204] (imputed)	N
2346	chr1	230862997	230862998	rs1326889	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	1q42.2	AGT	rs1326889-C	NR	4E-7		1.1111112	[1.06-1.16]	NR [NR]	N
2346	chr1	230865119	230865120	rs2493141	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	1q42.2	LOC105373166, AGT	rs2493141-A	0.33	2E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2346	chr1	230865119	230865120	rs2493141	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1q42.2	LOC105373166, AGT	rs2493141-A	0.33	1E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2346	chr1	230878560	230878561	rs2493151	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q42.2	RP11-99J16__A.2, CAPN9	rs2493151-A	0.2349095	2E-11	(EA, Angiotensinogen)	0.3349	[0.24-0.43] unit increase	Affymetrix [509946]	N
2346	chr1	230881761	230881762	rs10495300	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	1q42.2	CAPN9	rs10495300-?	NR	1E-6	(women)	0.021	[0.013-0.029] unit increase	Illumina [5527232] (imputed)	N
2346	chr1	230887223	230887224	rs61828378	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	1q42.2	CAPN9	rs61828378-?	NR	7E-6		0.186	[0.1-0.27] unit decrease	Illumina [at least 13000000] (imputed)	N
2346	chr1	230922950	230922951	rs12038826	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1q42.2	CAPN9	rs12038826-?	0.071	7E-6			[NR]	Affymetrix, Illumina [152234]	N
2346	chr1	230947139	230947140	rs1202519	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	1q42.2	Intergenic	rs1202519-?		6E-6		1.2845215	[NR]	Affymetrix [492217] (imputed)	N
2347	chr1	230957243	230957244	rs74144838	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs74144838-C	0.01394	2E-8	(GSTK1)	0.2122	NR unit increase	Illumina [1671387] (imputed)	N
2347	chr1	230963729	230963730	rs78977568	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	1q42.2	RNA5SP79	rs78977568-G	NR	7E-6		0.10053399	[0.057-0.144] unit decrease	Affymetrix [9576485] (imputed)	N
2347	chr1	230986406	230986407	rs145470028	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	1q42.2	C1orf198	rs145470028-G	NR	3E-8		1.2820514	[1.18-1.39]	Affymetrix, Illumina [12923718] (imputed)	N
2347	chr1	230986406	230986407	rs145470028	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	1q42.2	NR	rs145470028-?	NR	3E-8		0.2472	[0.16-0.33] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
2347	chr1	231018110	231018111	rs9432230	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	1q42.2	C1orf198	rs9432230-C	0.893	5E-7	(AA)			Illumina [NR] (imputed)	N
2347	chr1	231041136	231041137	rs190398780	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1q42.2	TTC13	rs190398780-T	0.9983	7E-6		0.9548	[0.54-1.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2347	chr1	231050718	231050719	rs6687367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.2		rs6687367-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2347	chr1	231061563	231061564	rs4240944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q42.2	NR	rs4240944-A	0.485079	9E-12		0.013039	[0.0093-0.0168] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2347	chr1	231075787	231075788	rs7511745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs7511745-C	0.489883	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
2348	chr1	231082453	231082454	rs16853414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q42.2		rs16853414-C	NR	4E-13		0.0097	[0.0072-0.0122] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2348	chr1	231087074	231087075	rs4846884	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	ARV1	rs4846884-?	NR	6E-6	(trimethylamine N oxide)	0.210836	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2348	chr1	231089783	231089784	rs145585753	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	1q42.2		rs145585753-?	NR	8E-6		1.947	[1.454-2.608]	Affymetrix [7975321] (imputed)	N
2348	chr1	231114594	231114595	rs11122174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.2	TTC13	rs11122174-T	0.398275	1E-10		0.014454928	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2348	chr1	231114594	231114595	rs11122174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q42.2	TTC13	rs11122174-T	0.398243	1E-10		0.014455624	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2348	chr1	231114594	231114595	rs11122174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q42.2	TTC13	rs11122174-T	0.39828	5E-14		0.016978072	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2348	chr1	231172280	231172281	rs4074493	24954085	Della-Morte D	2014-06-14	J Neurol Sci	Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.	Carotid plaque burden (smoking interaction)	665 Hispanic individuals	264 Hispanic indivduals	1q42.2	FAM89A	rs4074493-C	0.44	7E-6		0.36	[0.20-0.52] unit increase	Affymetrix [722379]	N
2348	chr1	231174430	231174431	rs4543780	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	ARV1	rs4543780-?	NR	6E-6	(F1P; F6P; G1P; G6P)	0.18254231	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
2348	chr1	231181127	231181128	rs113239743	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q42.2	NR	rs113239743-?	NR	5E-8		8832.758	NR unit decrease	Illumina [2379855]	N
2348	chr1	231203588	231203589	rs11122219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q42.2		rs11122219-?	NR	4E-11				NR [~ 8900000] (imputed)	N
2349	chr1	231243210	231243211	rs12091966	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	1q42.2	NR	rs12091966-G		7E-6		0.0772	[0.044-0.111] SD units decrease	NR [10700000] (imputed)	N
2349	chr1	231264109	231264110	rs576949842	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	1q42.2	TRIM67	rs576949842-A	0.07	8E-6	(African American)	0.34	0.19-0.49 unit increase	Illumina [NR] (imputed)	N
2349	chr1	231270635	231270636	rs12023396	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.2	TRIM67	rs12023396-G	0.181	4E-7	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2349	chr1	231293589	231293590	rs6694276	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q42.2	NR	rs6694276-A	0.07	3E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
2349	chr1	231296754	231296755	rs75219957	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1q42.2	FAM89A, TRIM67	rs75219957-G	0.02	3E-8	(African American)	1.04	[0.67-1.41] unit increase	Illumina [up to 13042663] (imputed)	N
2349	chr1	231326260	231326261	rs190115083	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity	21,495 European ancestry individuals	NA	1q42.2	TRIM67	rs190115083-G	0.0042	1E-6		4.255	[2.544-5.966] unit increase	Illumina [11508759] (imputed)	N
2349	chr1	231326696	231326697	rs151022175	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q42.2	NR	rs151022175-?	NR	4E-6		4.629	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2350	chr1	231404652	231404652	rs34988391	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	1q42.2	NR	rs34988391-CA	0.432728	6E-7	(women)	0.170611	[0.1-0.24] % increase	Affymetrix [532676] (imputed)	N
2350	chr1	231404652	231404652	rs34988391	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	1q42.2	NR	rs34988391-CA	0.432728	5E-6	(women)	0.149068	[0.086-0.213] mm2 increase	Affymetrix [532676] (imputed)	N
2350	chr1	231404652	231404652	rs34988391	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	1q42.2	NR	rs34988391-CA	0.432728	2E-6	(women)	0.195732	[0.12-0.28] % increase	Affymetrix [532676] (imputed)	N
2350	chr1	231404652	231404652	rs34988391	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	1q42.2	NR	rs34988391-CA	0.432728	8E-6	(women)	0.181013	[0.1-0.26] mm2 increase	Affymetrix [532676] (imputed)	N
2350	chr1	231448496	231448497	rs78561501	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	1q42.2	EGLN1	rs78561501-A	0.135	6E-15				Illumina [7300000] (imputed)	N
2350	chr1	231470771	231470772	rs11122272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q42.2	EXOC8	rs11122272-G	0.6284	4E-13		0.02665634	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231483307	231483308	rs149934137	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	1q42.2	NR	rs149934137-T	0.0026	9E-6		0.19486216	[0.11-0.28] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
2351	chr1	231495315	231495316	rs999010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q42.2	EGLN1, SPRTN	rs999010-G	0.629001	2E-25		0.023889182	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231495315	231495316	rs999010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q42.2	EGLN1, SPRTN	rs999010-G	0.629004	3E-31		0.026721295	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231510267	231510267	rs576195416	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1q42.2	EGLN1	rs576195416-AT	0.601	8E-16		0.03003375	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231520873	231520874	rs973253	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	1q42.2	EGLN1	rs973253-C	0.2992	8E-7		1.812	[1.57-2.05]	Illumina [281811]	N
2351	chr1	231532311	231532312	rs508618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q42.2	EGLN1	rs508618-A	0.8057	2E-9		0.02707177	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231541911	231541912	rs5781651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.2	EGLN1	rs5781651-C	0.763804	1E-22		0.02566527	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231548479	231548480	rs2808611	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	1q42.2		rs2808611-A	0.64	7E-8		0.07	unit increase	Illumina [2093892] (imputed)	N
2351	chr1	231548479	231548480	rs2808611	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	1q42.2		rs2808611-A	0.64	1E-9		0.09	unit increase	Illumina [2398641] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q42.2		rs186996510-C	NR	4E-8		0.039	[0.025-0.053] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	1q42.2		rs186996510-C	0.050727	4E-8		0.0390068	[0.025-0.053] unit decrease	Illumina [13478778] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	1q42.2		rs186996510-C	0.050671	3E-29		0.0871649	[0.072-0.102] unit decrease	Illumina [13479135] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	1q42.2		rs186996510-C	0.050755	2E-26		0.0811947	[0.066-0.096] unit decrease	Illumina [13478948] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	1q42.2		rs186996510-C	0.050679	2E-29		0.0874568	[0.072-0.103] unit decrease	Illumina [13478961] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	1q42.2	NR	rs186996510-G	0.959677	1E-17		0.095071	[0.073-0.117] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	1q42.2	NR	rs186996510-G	0.959686	2E-17		0.095085	[0.073-0.117] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
2351	chr1	231557622	231557623	rs186996510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	1q42.2	NR	rs186996510-G	0.95901	3E-19		0.10117	[0.079-0.123] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.0196915	5E-51				Affymetrix, Illumina [24332387] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.020239	4E-54		0.103665	[0.091-0.117] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.019678	4E-64				Affymetrix, Illumina [24653286] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.02021	9E-68		0.11614	[0.1-0.13] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.0196507	2E-66				Affymetrix, Illumina [24558453] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q42.2	NR	rs533281866-C	0.020183	4E-70		0.118655	[0.11-0.13] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q42.2	EGLN1	rs533281866-C		8E-44		0.108	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q42.2	EGLN1	rs533281866-C	0.0215	8E-20		0.114322	[0.09-0.139] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q42.2	EGLN1	rs533281866-C	0.0215	2E-24		0.1277725	[0.1-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231558053	231558054	rs533281866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	1q42.2	EGLN1	rs533281866-C	0.0215	8E-25		0.1281738	[0.1-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q42.2		rs61835223-G	NR	5E-39		0.0954	[0.081-0.11] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q42.2		rs61835223-G	NR	1E-45		0.0962	[0.083-0.11] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	1q42.2		rs61835223-G	NR	2E-46		0.0998	[0.086-0.114] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.2	EGLN1	rs61835223-G	0.0204260000000001	2E-43		0.10938241	[0.094-0.125] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q42.2	EGLN1	rs61835223-G	0.02042	3E-48		0.11624415	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	1q42.2	EGLN1	rs61835223-G	0.020423	9E-50		0.11817201	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr1	231562227	231562228	rs61835223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q42.2		rs61835223-?	NR	3E-49				NR [~ 8900000] (imputed)	N
2352	chr1	231633150	231633151	rs1765787	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	EGLN1	rs1765787-?	NR	4E-6	(pantothenic acid)	0.17303434	[0.1-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
2352	chr1	231716530	231716531	rs149133391	27601451	Sanders AE	2016-09-06	J Dent Res	Chronic Periodontitis Genome-wide Association Study in the Hispanic Community Health Study / Study of Latinos.	Chronic periodontitis (mean interproximal clinical attachment level)	10,935 Hispanic individuals	4,402 European ancestry individuals, 908 African American individuals	1q42.2	TSNAX, DISC1	rs149133391-C	0.011	8E-9	(Hispanics)	0.139	[0.092-0.186] unit decrease	Illumina [~ 20000000] (imputed)	N
2352	chr1	231732122	231732123	rs1655300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q42.2	TSNAX-DISC1, LINC00582	rs1655300-C	0.566089	9E-11		0.013884	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
2352	chr1	231733312	231733313	rs6690633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs6690633-C	0.384998	9E-11				Affymetrix, Illumina [22063850] (imputed)	N
2352	chr1	231733312	231733313	rs6690633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q42.2	NR	rs6690633-C	0.372762	1E-12		0.013728	[0.0099-0.0175] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2352	chr1	231733794	231733795	rs1655296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs1655296-T	0.53964	6E-10				Affymetrix, Illumina [24246363] (imputed)	N
2352	chr1	231734572	231734573	rs1765779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.2		rs1765779-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2353	chr1	231735945	231735945	rs34001714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q42.2		rs34001714-GC	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2353	chr1	231736610	231736611	rs9651124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q42.2	NR	rs9651124-T	0.616087	3E-12		0.013028	[0.0094-0.0167] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2353	chr1	231738990	231738991	rs6659854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs6659854-A	0.512324	1E-14				Affymetrix, Illumina [21126107] (imputed)	N
2353	chr1	231738990	231738991	rs6659854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q42.2	NR	rs6659854-A	0.618166	6E-15		0.016069	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2353	chr1	231746949	231746950	rs892356	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	TSNAX	rs892356-?	NR	2E-6	(pyridoxate)	0.20114733	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
2353	chr1	231774315	231774316	rs756996513	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q42.2	DISC1, TSNAX-DISC1	rs756996513-A	0.9985	5E-6		0.8583	[0.49-1.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2353	chr1	231774315	231774316	rs756996513	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	1q42.2	DISC1, TSNAX-DISC1	rs756996513-A	0.9985	5E-6		0.8583	[0.49-1.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2353	chr1	231799591	231799592	rs12060910	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	1q42.2	NR	rs12060910-?		3E-6				Illumina [892589]	N
2353	chr1	231816841	231816842	rs12042938	21483430	Carless MA	2011-04-12	Mol Psychiatry	Impact of DISC1 variation on neuroanatomical and neurocognitive phenotypes.	Neuranatomic and neurocognitive phenotypes	857 Mexican American individuals	NA	1q42.2	DISC1	rs12042938-C	0.48	4E-36				Illumina [543031]	N
2353	chr1	231844346	231844347	rs12044355	19118814	Beecham GW	2009-01-03	Am J Hum Genet	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	1q42.2	DISC1	rs12044355-?	NR	9E-6				Illumina [~ 2500000] (imputed)	N
2354	chr1	231897302	231897303	rs1538977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q42.2	NR	rs1538977-?	NR	3E-6		4.685	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2354	chr1	231898590	231898591	rs11122330	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	1q42.2	TSNAX-DISC1	rs11122330-G	0.1129	2E-6	(EA)			Illumina [4404269] (imputed)	N
2354	chr1	231899703	231899704	rs2793086	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	1q42.2	DISC1	rs2793086-C	NR	9E-6		3.01	[1.51-6.01]	Illumina [326385]	N
2354	chr1	231909297	231909297	rs146306327	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	1q42.2	DISC1	rs146306327-A	0.988	5E-6		0.094	[0.053-0.135] unit increase	Affymetrix [~ 10446505] (imputed)	N
2354	chr1	231926066	231926067	rs4332347	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.2	NR	rs4332347-?	NR	4E-20				Affymetrix [NR]	N
2354	chr1	231933663	231933664	rs11802094	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	TSNAX	rs11802094-?	NR	2E-6	(cotinine)	1.3344814	[0.78-1.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
2354	chr1	231949331	231949332	rs17766890	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	1q42.2	TSNAX-DISC1	rs17766890-T	0.0594243	5E-6		0.358929	[0.21-0.51] unit decrease	NR [7263501] (imputed)	N
2355	chr1	232005126	232005127	rs4658888	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	1q42.2	DISC1, TSNAX-DISC1	rs4658888-?	NR	4E-6		0.0594	NR unit increase	Affymetrix, Illumina [7062950] (imputed)	N
2355	chr1	232036029	232036030	rs821722	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	1q42.2	TSintergenicX-DISC1	rs821722-A	NR	1E-7				Illumina [up to 11995908] (imputed)	N
2355	chr1	232099882	232099883	rs145480862	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	1q42.2	DISC1	rs145480862-T	0.0015	2E-6		3.18738	NR	Affymetrix, Illumina [30341632] (imputed)	N
2356	chr1	232155150	232155151	rs16856202	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	1q42.2	DISC1	rs16856202-C	0.04	8E-6	(susceptibilty)	2.0	[NR]	Illumina [288357]	N
2356	chr1	232156244	232156245	rs6678723	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	1q42.2	DISC1, TSNAX-DISC1	rs6678723-G	0.78	8E-6		1.724138		Affymetrix [at least 730985] (imputed)	N
2356	chr1	232160057	232160058	rs16856236	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	1q42.2	DISC1	rs16856236-G	0.062	3E-6		0.188	[0.11-0.27] unit increase	Illumina [621723]	N
2356	chr1	232177486	232177487	rs1411776	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	1q42.2	intergenic	rs1411776-A	0.08	3E-6	(female)	5.12	z score increase	Illumina [6380737] (imputed)	N
2356	chr1	232246026	232246027	rs10746514	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	1q42.2	NR	rs10746514-?		3E-9	(Corticospinal tract )			NR [8955960] (imputed)	N
2356	chr1	232246026	232246027	rs10746514	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	1q42.2	SIA1L2, DISC2, DISC1	rs10746514-A	0.42	1E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
2357	chr1	232317943	232317944	rs1109916	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	1q42.2	NR	rs1109916-C	0.2953	3E-6		0.1549	[0.09-0.219] unit decrease	Illumina [10677593] (imputed)	N
2357	chr1	232328400	232328401	rs6666516	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	1q42.2	NR	rs6666516-A	0.492379	6E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
2357	chr1	232371801	232371802	rs78349390	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs78349390-G	0.01045	4E-9	(LDHB)	0.1662	NR unit increase	Illumina [1671387] (imputed)	N
2357	chr1	232376162	232376163	rs115684722	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	1q42.2	SIPA1L2	rs115684722-?		6E-7	(model 1)	12.6	[4.66-34.45]	Illumina [29610185] (imputed)	N
2358	chr1	232444454	232444455	rs9725031	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	1q42.2	SIPA1L2	rs9725031-?		8E-6		1.13	[0.64-1.62] unit increase	Illumina [1197702]	N
2358	chr1	232456486	232456487	rs3949445	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	DISC1	rs3949445-?	NR	1E-6	(glycerol)	0.3998299	[0.24-0.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
2358	chr1	232484392	232484393	rs668959	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	1q42.2	BIP_interaction	rs668959-A	0.5769	3E-6		0.1363	[0.079-0.194] unit decrease	NR [NR] (imputed)	N
2358	chr1	232485095	232485096	rs16856846	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	1q42.2	intergenic	rs16856846-A	0.02	4E-8	(YKL-40)	62.66	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
2358	chr1	232490114	232490115	rs592019	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	1q42.2	TSNAX-DISC1, SIPA1L2	rs592019-T	0.6149	2E-6		0.1533	[0.09-0.216] unit increase	NR [NR] (imputed)	N
2358	chr1	232519149	232519150	rs669408	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	1q42.2	SIPA1L2	rs669408-C	0.41	1E-6		1.33	[1.18-1.49]	Illumina [2057134] (imputed)	N
2359	chr1	232529743	232529744	rs10158347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q42.2		rs10158347-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2359	chr1	232530589	232530590	rs6683021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	1q42.2		rs6683021-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2359	chr1	232555352	232555353	rs2357066	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	1q42.2	SIPA1L2	rs2357066-T	NR	1E-6		1.1185683	[1.06-1.18]	Illumina [6627481] (imputed)	N
2359	chr1	232556782	232556783	rs10910445	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.2	NR	rs10910445-?	NR	7E-45				Affymetrix [NR]	N
2359	chr1	232572037	232572038	rs12736932	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q42.2		rs12736932-G	0.772	1E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
2359	chr1	232599188	232599189	rs10910527	30706531	Tao F	2019-01-31	Ann Neurol	Variation in SIPA1L2 is Correlated with Phenotype Modification in CMT Type 1A.	Reduced foot dorsiflexion strength in Charcot-Marie-Tooth disease type 1A	183 European ancestry cases severe cases, 147 European ancestry mild cases	55 Asian ancestry severe cases, 25 Asian ancestry mild cases	1q42.2	SIPA1L2	rs10910527-T	NR	6E-8	(EA)	12.794	[5.083-32.206]	Illumina [633827]	N
2359	chr1	232611485	232611486	rs12049047	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	KIAA1383	rs12049047-?	NR	5E-6	(LPC 22:6)	1.4764519	[0.84-2.11] unit increase	Affymetrix [at least 2500000] (imputed)	N
2359	chr1	232614786	232614787	rs4649269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q42.2		rs4649269-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2360	chr1	232664610	232664611	rs10797576	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	1q42.2	SIPA1L2	rs10797576-T		2E-7		0.1045	[0.065-0.144] unit increase	Illumina [NR]	N
2360	chr1	232664610	232664611	rs10797576	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	1q42.2	SIPA1L2	rs10797576-T	0.1403	7E-17		0.1114	[0.085-0.137] unit increase	NR [7784415] (imputed)	N
2360	chr1	232664610	232664611	rs10797576	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	1q42.2	SIPA1L2	rs10797576-T	0.135	8E-13		1.12	[1.09-1.15]	Illumina [11933700] (imputed)	N
2360	chr1	232664610	232664611	rs10797576	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	1q42.2	SIPA1L2	rs10797576-T	0.14	5E-10		1.131	[1.09-1.17]	Illumina [7893274] (imputed)	N
2360	chr1	232669271	232669272	rs11589828	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	1q42.2	LOC729336	rs11589828-?	NR	8E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
2360	chr1	232681109	232681110	rs789644	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	1q42.2		rs789644-A	NR	4E-6		1.16832	[1.10-1.23] unit increase	Affymetrix [825927] (imputed)	N
2360	chr1	232683524	232683525	rs2254220	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	1q42.2		rs2254220-?	NR	7E-6		0.195	unit decrease	Illumina [NR] (imputed)	N
2360	chr1	232690085	232690086	rs2243857	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q42.2	SIPA1L2	rs2243857-A	0.4639	3E-14		0.5267	[0.39-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2360	chr1	232712144	232712145	rs1285678	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q42.2	SIPA1L2	rs1285678-A	0.47	3E-15		0.52	[0.38-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2360	chr1	232756025	232756026	rs10495332	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	1q42.2	SIPA1L2	rs10495332-T	0.0227	8E-6		4.119	[NR] unit decrease	Illumina [1216189] (imputed)	N
2360	chr1	232765307	232765308	rs7354849	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	1q42.2	SIPA1L2	rs7354849-A	0.540843	7E-9		0.00817408	[0.0054-0.0109] unit decrease	Affymetrix [12370749]	N
2360	chr1	232780847	232780848	rs1334407	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	1q42.2	LINC01745	rs1334407-C	0.571608	7E-25		0.00517397	[0.0042-0.0062] unit decrease	Affymetrix [13995440] (imputed)	N
2360	chr1	232783850	232783851	rs7537378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q42.2		rs7537378-A	NR	4E-19		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2361	chr1	232811908	232811909	rs12118941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	1q42.2		rs12118941-A	0.443222	1E-11		0.0254537	[0.018-0.033] unit increase	Illumina [13476165] (imputed)	N
2361	chr1	232860462	232860463	rs533931579	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		1q42.2	intergenic	rs533931579-T	0.011	8E-6		2.217	[1.26-3.18] unit increase	Illumina [640625] (imputed)	N
2362	chr1	232925440	232925441	rs12036759	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	1q42.2	MAP10	rs12036759-G	NR	5E-7	(Irritable dimension)	0.7084	[0.44-0.98] unit decrease	Illumina [1871025] (imputed)	N
2362	chr1	232935718	232935719	rs12042052	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	1q42.2	MAP10	rs12042052-G	NR	4E-7	(Irritable dimension)	0.7052	[0.44-0.98] unit decrease	Illumina [1871025] (imputed)	N
2362	chr1	232937738	232937739	rs1495986	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	1q42.2	NR	rs1495986-?	NR	4E-6		712.0047	NR unit increase	Illumina [2379855]	N
2362	chr1	232938698	232938699	rs10910623	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	1q42.2	MAP10	rs10910623-A	NR	3E-7	(Irritable dimension)	0.7022	[0.44-0.97] unit decrease	Illumina [1871025] (imputed)	N
2362	chr1	232971107	232971108	rs2814543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs2814543-C	0.02091	2E-8	(KRT18)	2.22	NR unit increase	Illumina [1671387] (imputed)	N
2362	chr1	232971107	232971108	rs2814543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs2814543-C	0.02091	1E-13	(HIST1H1C)	0.03032	NR unit increase	Illumina [1671387] (imputed)	N
2362	chr1	233024546	233024547	rs7512435	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	1q42.2		rs7512435-?	NR	3E-6		0.1955271	[0.11-0.28] unit increase	Illumina [9901720] (imputed)	N
2363	chr1	233048253	233048254	rs73101498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	1q42.2	NR	rs73101498-T	0.05773	3E-11		0.026416	[0.019-0.034] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2363	chr1	233093954	233093955	rs6704443	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	1q42.2	NR	rs6704443-T	NR	3E-6		0.9026	NR	Illumina [at least 560000] (imputed)	N
2363	chr1	233176033	233176034	rs2273673	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.2	NR	rs2273673-?	NR	8E-7				Affymetrix [NR]	N
2363	chr1	233176455	233176456	rs6424270	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		1q42.2	PCNXL2	rs6424270-C	NR	4E-6		0.09	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
2364	chr1	233196948	233196949	rs72762082	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	1q42.2		rs72762082-?	NR	6E-6		0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2364	chr1	233242005	233242006	rs10910660	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	1q42.2	Intergenic	rs10910660-?	NR	5E-6		1.4275517	[NR]	Affymetrix [492217] (imputed)	N
2364	chr1	233291950	233291951	rs1159970	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	1q42.2	NR	rs1159970-?	NR	8E-8	(alphaCz)	5.364	z score decrease	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
2364	chr1	233294776	233294777	rs7550169	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	1q42.2	PCNXL2	rs7550169-C	0.312	2E-6	(EA, women)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2365	chr1	233339210	233339211	rs4649444	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	1q42.2	PCNXL2	rs4649444-A	0.205	1E-6	(n-6 PUFA)			Affymetrix [590000]	N
2365	chr1	233340153	233340154	rs12027542	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	1q42.2	PCNXL2	rs12027542-A	0.61	4E-7	(Malay)	1.41	[1.23-1.61]	Illumina [~ 2000000] (imputed)	N
2365	chr1	233382506	233382507	rs115302302	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs115302302-G	0.01045	3E-8	(EHHADH)	1.803	NR unit increase	Illumina [1671387] (imputed)	N
2365	chr1	233382506	233382507	rs115302302	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q42.2	NR	rs115302302-G	0.01045	1E-9	(AGXT)	7.507	NR unit increase	Illumina [1671387] (imputed)	N
2365	chr1	233387565	233387566	rs7546115	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	KIAA1804	rs7546115-?	NR	8E-6	(3-hydroxyanthranilic acid)	0.20171025	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
2365	chr1	233407176	233407177	rs12135534	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	1q42.2	PCNXL2	rs12135534-A	0.13	2E-6		4.76	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
2365	chr1	233412560	233412561	rs12129938	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	1q42.2	PCNXL2	rs12129938-A	0.795	4E-11		1.32	1.20-1.43	Illumina [7100000] (imputed)	N
2365	chr1	233416537	233416538	rs4649295	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	1q42.2	PCNXL2	rs4649295-T	0.82	9E-8		1.45	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
2365	chr1	233416537	233416538	rs4649295	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	1q42.2	PCNXL2	rs4649295-T	0.82	6E-8		1.43	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
2366	chr1	233562211	233562212	rs4492561	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	1q42.2	KIAA1804	rs4492561-G	0.4462	3E-6		1.459	[1.245-1.708]	Affymetrix, Illumina [14074516] (imputed)	N
2367	chr1	233622927	233622928	rs36060340	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	1q42.2	MLK4	rs36060340-A	NR	7E-7	(between families)	4.975	unit increase	Affymetrix [up to 15107142] (imputed)	N
2367	chr1	233643855	233643856	rs10910200	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1q42.2	KIAA1804, KCNK1	rs10910200-G	0.25	6E-6		1.35	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
2367	chr1	233677409	233677410	rs35300120	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	1q42.2	KCNK1	rs35300120-?		9E-6				Illumina [1048575]	N
2367	chr1	233695393	233695394	rs12740439	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	KIAA1804	rs12740439-?	NR	6E-7	(taurine)	0.16903092	[0.1-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2368	chr1	233719983	233719984	rs11800854	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	1q42.2	KIAA1804, KCNK1	rs11800854-G	0.947	4E-6	(A. actino)	8.12	[2.73-24.11]	Affymetrix [~ 2500000] (imputed)	N
2368	chr1	233719983	233719984	rs11800854	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	1q42.2	KIAA1804, KCNK1	rs11800854-G	0.947	3E-7	(Red)	12.3	[3.70-41.3]	Affymetrix [~ 2500000] (imputed)	N
2368	chr1	233771274	233771275	rs701230	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	1q42.2	NR	rs701230-?	NR	7E-7				Illumina [7500450] (imputed)	N
2368	chr1	233795309	233795310	rs61824320	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	1q42.2	KCNK1	rs61824320-A	NR	2E-7	(BDRABS)	0.0142	[0.0089-0.0195] unit decrease	Illumina [NR] (imputed)	N
2369	chr1	233844173	233844174	rs139808721	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	1q42.2	NR	rs139808721-C	0.00886312	8E-6		1.123	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
2369	chr1	233954230	233954231	rs75108997	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea (average oxygen saturation during sleep)	12,557 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	1q42.2	NR	rs75108997-A	NR	7E-7	(Hispanic, females)	0.365	[0.22-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2370	chr1	234008742	234008743	rs2801439	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	1q42.2	SLC35F3	rs2801439-?	NR	5E-9		0.006498	[0.0024-0.0106] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
2370	chr1	234075396	234075397	rs139467600	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q42.2	SLC35F3	rs139467600-T	0.998	7E-7	(AA)	0.235	unit increase	Illumina [NR] (imputed)	N
2371	chr1	234119809	234119810	rs12759054	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	1q42.2	SLC35F3	rs12759054-?	NR	5E-8				Affymetrix [up to 7325140] (imputed)	N
2371	chr1	234119809	234119810	rs12759054	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	1q42.2	SLC35F3	rs12759054-?	NR	1E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
2371	chr1	234191487	234191488	rs150148362	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	1q42.2	SLC35F3	rs150148362-?		8E-7	(French Canadians)	5.111142		Illumina [7614484] (imputed)	N
2371	chr1	234223967	234223968	rs12145104	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	C1orf31	rs12145104-?	NR	9E-7	(taurine)	0.22467732	[0.14-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
2372	chr1	234264077	234264078	rs936412	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.2	NR	rs936412-?	NR	3E-6				Affymetrix [NR]	N
2372	chr1	234285973	234285974	rs12074312	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.2	C1orf31	rs12074312-?	NR	7E-6	(PC 36:5)	0.34778255	[0.2-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2372	chr1	234297127	234297127	rs146076295	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	1q42.2		rs146076295-?	NR	2E-7				Affymetrix [810906]	N
2372	chr1	234335045	234335046	rs7521660	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Macroscopic brain infarct	327 European ancestry cases, 582 European ancestry controls	369 individuals	1q42.2	NR	rs7521660-G	0.9	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2372	chr1	234352898	234352899	rs4333882	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q42.2	SLC35F3	rs4333882-G	0.191980857198672	4E-22		0.0066512	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
2373	chr1	234387227	234387227	rs199872130	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	1q42.2	NR	rs199872130-AAC	NR	3E-6		0.1106	[0.064-0.157] SD units decrease	NR [10700000] (imputed)	N
2373	chr1	234396528	234396529	rs74446778	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	1q42.2	NR	rs74446778-A	0.138	4E-6	(Females)	0.324469	[0.19-0.46] unit decrease	Illumina [~ 6600000] (imputed)	N
2373	chr1	234416467	234416468	rs139340157	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	1q42.2	SLC35F3	rs139340157-A	0.0014	7E-7		1.5281	[0.92-2.13] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2373	chr1	234420502	234420503	rs573421908	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Creatinine levels	16,347 British ancestry from 6863 families.	NA	1q42.2	SLC35F3	rs573421908-A	0.0027	1E-8		0.7258836	[0.48-0.98] mg/dl increase	Illumina [24111857] (imputed)	N
2373	chr1	234425331	234425332	rs10752781	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	1q42.2	NR	rs10752781-T	0.4981	1E-6		0.1532	[0.092-0.215] unit decrease	Illumina [NR] (imputed)	N
2373	chr1	234477867	234477868	rs2677808	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q42.2	RP5-827C21.1	rs2677808-A	0.9963	8E-6		1.1275	[0.63-1.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2373	chr1	234482651	234482652	rs114872993	32627186	Man-Choi Ho A	2020-07-05	Clin Pharmacol Ther	Mood Stabilizing Antiepileptic Treatment Response in Bipolar Disorder: A Genome-Wide Association Study.	Response to antiepileptic mood-stabilizing treatment in bipolar disorder	199 European ancestry cases	NA	1q42.2	SLC35F3	rs114872993-G	0.029	3E-8		4.5	NR unit decrease	Illumina [7368687] (imputed)	N
2374	chr1	234583617	234583618	rs10489896	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	1q42.2	TARBP1	rs10489896-?	NR	6E-6	(F2)			Affymetrix [70897]	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	6E-6				Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	2E-6				Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	8E-7		0.0291	[0.018-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	3E-7		0.0295	[0.018-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	5E-7		0.0285	[0.017-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234632368	234632369	rs6586390	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	1q42.2	TARBP1	rs6586390-A	0.5081	1E-6		0.0284	[0.017-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2375	chr1	234648153	234648154	rs10797551	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	1q42.2	NR	rs10797551-?	NR	9E-7		1.5151515	[1.28-1.79]	Illumina [9789995] (imputed)	N
2375	chr1	234651782	234651783	rs866548296	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	1q42.2		rs866548296-T	NR	8E-8				Illumina [1084750]	N
2375	chr1	234662889	234662890	rs271738	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	1q42.2	IRF2BP2	rs271738-A	NR	5E-6		1.32	[NR]	Affymetrix [745006]	N
2375	chr1	234664364	234664365	rs12070208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1q42.2		rs12070208-C	0.253141461	2E-10		0.072711945	[0.05-0.095] unit increase	Illumina [13429980] (imputed)	N
2375	chr1	234692433	234692434	rs4244370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q42.2		rs4244370-C	0.545099	1E-10		0.014376474	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2375	chr1	234692771	234692772	rs4403658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs4403658-C	0.552905	3E-17				Affymetrix, Illumina [24246363] (imputed)	N
2375	chr1	234692771	234692772	rs4403658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs4403658-C	0.556581	3E-12				Affymetrix, Illumina [20825802] (imputed)	N
2375	chr1	234726011	234726012	rs744487	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q42.2		rs744487-A	0.6732	8E-9		0.09248662	[0.06-0.125] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
2375	chr1	234726011	234726012	rs744487	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	1q42.2	TARBP1	rs744487-?		1E-7		1.09	1.05-1.12	Illumina [87827]	N
2375	chr1	234726011	234726012	rs744487	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	1q42.2	intergenic	rs744487-A	0.72	5E-6		0.069	[0.039-0.099] unit decrease	Affymetrix [~ 2740000] (imputed)	N
2375	chr1	234726355	234726356	rs11581667	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q42.2	NR	rs11581667-C	0.745277716510903	4E-6	(IGP64)	0.196	[0.11-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
2375	chr1	234728941	234728942	rs79855325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.2	U8	rs79855325-C	0.085816	1E-20		0.038035866	[0.03-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2375	chr1	234728941	234728942	rs79855325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.2	U8	rs79855325-C	0.085801	1E-11		0.027606048	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2375	chr1	234732706	234732707	rs10910474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs10910474-C	0.19585	6E-14				Affymetrix, Illumina [24588908] (imputed)	N
2375	chr1	234732706	234732707	rs10910474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q42.2	NR	rs10910474-C	0.225652	4E-14		0.016556	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2375	chr1	234734289	234734290	rs7544869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q42.2	NR	rs7544869-T	0.553486	1E-18		0.016073	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2375	chr1	234734654	234734655	rs6695132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q42.2		rs6695132-T	0.2216	1E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q42.2		rs10910476-C	0.45	5E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q42.2		rs10910476-T	NR	3E-14		0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q42.2		rs10910476-T	NR	1E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q42.2		rs10910476-T	NR	7E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q42.2		rs10910476-C	0.444	1E-11		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.2	NR	rs10910476-T	0.484312	3E-18				Affymetrix, Illumina [24332387] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q42.2	NR	rs10910476-T	0.553099	1E-18		0.016469	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q42.2	IRF2BP2	rs10910476-C	0.444839	4E-9		0.0123459	[0.0082-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	1q42.2	NR	rs10910476-C	0.444104	1E-9		0.0168419	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q42.2		rs10910476-?	NR	8E-18				NR [~ 8900000] (imputed)	N
2375	chr1	234734955	234734956	rs10910476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.2		rs10910476-?	NR	2E-12				NR [~ 8900000] (imputed)	N
2375	chr1	234735979	234735980	rs112096491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q42.3	IRF2BP2	rs112096491-T	0.551977	5E-16		0.018144123	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2375	chr1	234735979	234735980	rs112096491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q42.3	IRF2BP2	rs112096491-T	0.551939	6E-12		0.0155567	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2375	chr1	234735979	234735980	rs112096491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q42.3	IRF2BP2	rs112096491-T	0.551909	8E-10		0.013764971	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
2375	chr1	234735979	234735980	rs112096491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q42.3	NR	rs112096491-T	0.551364	4E-12		0.014063	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2375	chr1	234736927	234736928	rs1329128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q42.3		rs1329128-C	NR	2E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2375	chr1	234736927	234736928	rs1329128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q42.3	IRF2BP2	rs1329128-C	0.790034	9E-13		0.019411683	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2375	chr1	234738337	234738338	rs6672925	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q42.3	IRF2BP2	rs6672925-G	0.271815	2E-11		0.0138896	[0.0098-0.0179] unit increase	NR [13737936] (imputed)	N
2375	chr1	234738337	234738338	rs6672925	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q42.3		rs6672925-?	NR	3E-9		0.0139517	[0.0094-0.0185] unit increase	Affymetrix [20259828] (imputed)	N
2375	chr1	234738337	234738338	rs6672925	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q42.3	Intergenic	rs6672925-A	0.7267	5E-8	(MTAG)	0.014	[0.0089-0.0191] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2375	chr1	234739100	234739101	rs6586405	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	1q42.3	IRF2BP2	rs6586405-C	0.671957	3E-8		0.012174	[0.0078-0.0165] unit increase	NR [16516521] (imputed)	N
2375	chr1	234740140	234740141	rs8823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q42.3	Intergenic	rs8823-A	0.7367	5E-9	(MTAG)	0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2375	chr1	234740140	234740141	rs8823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q42.3	Intergenic	rs8823-A	0.7363	5E-11	(MTAG)	0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2375	chr1	234740879	234740880	rs1329125	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q42.3		rs1329125-T	0.32	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
2375	chr1	234740879	234740880	rs1329125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q42.3		rs1329125-T	0.3273	8E-11		0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2375	chr1	234740879	234740880	rs1329125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q42.3	Intergenic	rs1329125-T	0.3273	4E-12	(MTAG)	0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2376	chr1	234752587	234752588	rs1887917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.3		rs1887917-A	0.728372	3E-14		0.01887627	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2376	chr1	234752936	234752937	rs141885537	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	1q42.3	NR	rs141885537-G	0.0344302	1E-9		0.0507942	[0.034-0.067] unit decrease	NR [19129689] (imputed)	N
2376	chr1	234757756	234757757	rs630104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q42.3		rs630104-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2376	chr1	234758180	234758181	rs632180	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	1q42.3	LINC00184	rs632180-T	0.7	2E-8		0.0065999	[0.0043-0.0089] unit decrease	NR [16367095] (imputed)	N
2376	chr1	234758903	234758904	rs12736461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.3		rs12736461-?	NR	4E-11				NR [~ 8900000] (imputed)	N
2376	chr1	234762073	234762074	rs599633	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q42.3	IRF2BP2, TOMM20	rs599633-G	0.7	3E-14		7.6	z-score increase	Affymetrix [4311822] (imputed)	N
2376	chr1	234765255	234765256	rs533483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q42.3	NR	rs533483-A	0.244075	2E-10		0.014327	[0.0099-0.0187] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2376	chr1	234779065	234779066	rs72749982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q42.3	RP4-781K5.4, RP4-781K5.9	rs72749982-A	0.016978	2E-9		0.05129728	[0.034-0.068] unit increase	Affymetrix [93095623] (imputed)	N
2376	chr1	234779065	234779066	rs72749982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q42.3	RP4-781K5.4, RP4-781K5.9	rs72749982-A	0.016989	1E-11		0.05781183	[0.041-0.075] unit increase	Affymetrix [93095623] (imputed)	N
2376	chr1	234779065	234779066	rs72749982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q42.3		rs72749982-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2376	chr1	234798431	234798432	rs72749998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q42.3	NR	rs72749998-C	NR	3E-13		0.0446	[0.033-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr1	234798431	234798432	rs72749998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q42.3	NR	rs72749998-C	NR	1E-11		0.0416	[0.03-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr1	234798431	234798432	rs72749998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q42.3	NR	rs72749998-C	NR	2E-9		0.037	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr1	234799147	234799148	rs656521	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q42.3	IRF2BP2	rs656521-G	0.491521	4E-11		0.0137098	[0.0096-0.0178] unit decrease	Affymetrix [NR] (imputed)	N
2376	chr1	234801176	234801176	rs35591409	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		1q42.3	RP4-781K5.4	rs35591409-CT	0.336379	6E-6		0.386393	[0.22-0.55] unit increase	Illumina [640625] (imputed)	N
2376	chr1	234807112	234807113	rs77918915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q42.3	RP4-781K5.6	rs77918915-T	0.012664	3E-10		0.0630968	[0.043-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
2376	chr1	234807112	234807113	rs77918915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q42.3	RP4-781K5.6	rs77918915-T	0.012657	2E-13		0.07446196	[0.055-0.094] unit increase	Affymetrix [93095623] (imputed)	N
2376	chr1	234807112	234807113	rs77918915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q42.3	RP4-781K5.6	rs77918915-T	0.012667	2E-13		0.07404616	[0.054-0.094] unit increase	Affymetrix [93095623] (imputed)	N
2376	chr1	234807112	234807113	rs77918915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs77918915-C	0.987669	7E-14				Affymetrix, Illumina [22063850] (imputed)	N
2376	chr1	234807112	234807113	rs77918915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q42.3	NR	rs77918915-C	0.987195	4E-16		0.069898	[0.053-0.087] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2376	chr1	234816553	234816554	rs482329	22247754	Murray SS	2012-01-11	PLoS One	Genome-wide association of implantable cardioverter-defibrillator activation with life-threatening arrhythmias.	Life threatening arrhythmia	607 European ancestry cases, 297 European ancestry controls	NA	1q42.3	IRF2BP2	rs482329-C	0.61	6E-6		1.6		Illumina [NR] (imputed)	N
2376	chr1	234819884	234819885	rs486650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.3	RP4-781K5.6	rs486650-T	0.471239	2E-12		0.015611531	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2376	chr1	234827951	234827952	rs542629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.3	RP4-781K5.6	rs542629-C	0.390338	1E-10		0.014644233	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2376	chr1	234828022	234828023	rs683825	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	1q42.3	RP4-781K5.6	rs683825-T	0.1922	8E-6		0.0323	[0.018-0.047] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234830589	234830590	rs498518	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	1q42.3		rs498518-A	NR	9E-6		1.8635	[1.59-2.14]	Illumina [7225561] (imputed)	N
2376	chr1	234842855	234842856	rs661955	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	1q42.3	IRF2BP2	rs661955-C	NR	2E-14				NR [2501549] (imputed)	N
2376	chr1	234842855	234842856	rs661955	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	1q42.3	IRF2BP2	rs661955-C	NR	3E-12				NR [2501749] (imputed)	N
2376	chr1	234847813	234847814	rs478691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q42.3		rs478691-G	NR	1E-17		0.0198	[0.015-0.024] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2376	chr1	234848608	234848609	rs486142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	1q42.3		rs486142-A	NR	6E-60		0.0353	[0.031-0.04] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	1E-31				Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	1E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	5E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	4E-36				Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	1E-29	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	6E-16		1.198	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	1E-13	(EA)	1.357	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	8E-6	(EA)	1.103	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848608	234848609	rs486142	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	1q42.3	LOC101927787, LINC01132	rs486142-A	NR	2E-8		1.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr1	234848711	234848712	rs508293	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	1q42.3		rs508293-G	0.482744	2E-13		0.0292774	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
2376	chr1	234848711	234848712	rs508293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	1q42.3		rs508293-A	NR	2E-67		0.0349	[0.031-0.039] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
2376	chr1	234849338	234849339	rs2587534	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1q42.3		rs2587534-A	0.5279	8E-11	(EA)	1.2121	[0.85-1.58] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2376	chr1	234849338	234849339	rs2587534	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	1q42.3	IRF2BP2	rs2587534-A	0.528	2E-23	(Trans-ethnic initial)	0.0391	[0.032-0.046] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2376	chr1	234850419	234850420	rs199900492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	1q42.3		rs199900492-CA	0.48401	2E-13		0.0296285	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234850419	234850420	rs199900492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	1q42.3		rs199900492-CA	0.48401	5E-14		0.0304835	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234850419	234850420	rs199900492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	1q42.3		rs199900492-CA	0.48401	7E-13		0.0292082	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234850419	234850420	rs199900492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	1q42.3		rs199900492-CA	0.484007	4E-14		0.0312602	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234850419	234850420	rs199900492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	1q42.3		rs199900492-CA	0.484007	5E-13		0.0299755	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851164	234851165	rs496654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	1q42.3		rs496654-A	0.48276	4E-13		0.028923	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851164	234851165	rs496654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	1q42.3		rs496654-A	0.48276	1E-12		0.0285091	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851164	234851165	rs496654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	1q42.3		rs496654-A	0.48276	2E-9		0.0244111	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851164	234851165	rs496654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs496654-A	0.48276	6E-9		0.0231747	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851164	234851165	rs496654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.3		rs496654-A	0.48276	6E-13		0.029471	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234851183	234851184	rs496708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	1q42.3		rs496708-A	NR	7E-13		0.0133	[0.0098-0.0168] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2376	chr1	234851215	234851216	rs496800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs496800-A	NR	4E-20		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234851215	234851216	rs496800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs496800-A	0.477	2E-17	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234851215	234851216	rs496800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs496800-A	NR	1E-16		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234851215	234851216	rs496800	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs496800-A	0.477	1E-13	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234852203	234852204	rs526936	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q42.3	LOC101927787, LINC01132	rs526936-?		1E-21		0.0424	[0.034-0.051] unit decrease	Illumina [31500000] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	9E-10		0.0240608	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	7E-15		0.0321215	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-14		0.0310149	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-12		0.0285619	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	9E-16		0.032868	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-15		0.0327483	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	3E-12		0.0278789	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	4E-15		0.0316618	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-14		0.0307547	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-14		0.0313813	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-15		0.0311849	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	3E-12		0.0286973	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-15		0.032725	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-13		0.0306847	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-14		0.0307558	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-14		0.0315166	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-15		0.0330153	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-15		0.0310851	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	5E-13		0.02984	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	5E-14		0.0310183	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	8E-13		0.0295578	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-14		0.0318296	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	3E-15		0.0319903	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	4E-15		0.0321631	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	4E-15		0.0323065	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	5E-15		0.0322742	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	3E-14		0.031181	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	7E-14		0.0309689	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	4E-13		0.0299671	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	3E-16		0.0333905	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-15		0.0328809	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-11		0.0260863	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	1E-14		0.0318115	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-13		0.0301972	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-14		0.0310354	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	4E-16		0.0332394	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	2E-11		0.0268913	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	1q42.3		rs553427-C	0.482963	6E-14		0.0309179	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234852759	234852760	rs553427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q42.3		rs553427-T	NR	3E-14		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2376	chr1	234852759	234852760	rs553427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	1q42.3		rs553427-T	0.710205	1E-10		0.0338519	[0.024-0.044] unit increase	Illumina [13461863] (imputed)	N
2376	chr1	234852759	234852760	rs553427	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	1q42.3	LOC101927787, LINC01132	rs553427-?		7E-24		0.0377	[0.03-0.045] unit decrease	Illumina [31500000] (imputed)	N
2376	chr1	234852759	234852760	rs553427	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	1q42.3	LOC101927787, LINC01132	rs553427-?	NR	1E-9		0.03482	[0.024-0.046] unit increase novel	Illumina [6108953] (imputed)	N
2376	chr1	234853058	234853059	rs556107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	1q42.3		rs556107-T	NR	1E-13		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
2376	chr1	234853058	234853059	rs556107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q42.3	IRF2BP2	rs556107-C	0.476667	8E-64		0.0352397	[0.031-0.039] unit decrease	Affymetrix [NR] (imputed)	N
2376	chr1	234853058	234853059	rs556107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q42.3	IRF2BP2	rs556107-C	0.476763	8E-67		0.0359348	[0.032-0.04] unit decrease	Affymetrix [NR] (imputed)	N
2376	chr1	234853058	234853059	rs556107	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	1q42.3	intergenic	rs556107-?	NR	1E-70		0.0451	[0.041-0.05] unit decrease	Affymetrix [5701386] (imputed)	N
2376	chr1	234853058	234853059	rs556107	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	1q42.3		rs556107-C	0.47	2E-8		1.71	[1.12-2.30] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
2376	chr1	234853058	234853059	rs556107	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	1q42.3	NR	rs556107-T	0.601	1E-21				Affymetrix, Illumina [at least 2500000] (imputed)	N
2376	chr1	234853058	234853059	rs556107	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q42.3	RP4-781K5.7	rs556107-T	0.5912	1E-35		0.0369	[0.031-0.043] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2376	chr1	234853058	234853059	rs556107	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs556107-C	NR	2E-18		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853058	234853059	rs556107	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs556107-C	0.472	8E-17	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853058	234853059	rs556107	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs556107-C	NR	6E-15		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853058	234853059	rs556107	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs556107-C	0.472	7E-13	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853267	234853268	rs557933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	1q42.3		rs557933-C	NR	8E-13		0.0353	[0.026-0.045] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2376	chr1	234853267	234853268	rs557933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	1q42.3	IRF2BP2	rs557933-A	0.479656	1E-15		0.0153071	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
2376	chr1	234853267	234853268	rs557933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q42.3	IRF2BP2	rs557933-A	0.479748	3E-22		0.0190966	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
2376	chr1	234853267	234853268	rs557933	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs557933-A	NR	9E-20		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853267	234853268	rs557933	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs557933-A	0.477	2E-17	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853267	234853268	rs557933	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs557933-A	NR	3E-16		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853267	234853268	rs557933	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs557933-A	0.477	1E-13	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234853267	234853268	rs557933	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	1q42.3	LOC101927787, LINC01132	rs557933-?	NR	2E-11		0.02899	[0.021-0.037] unit increase novel	Illumina [6108953] (imputed)	N
2376	chr1	234853267	234853268	rs557933	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	1q42.3	IRF2BP2	rs557933-C	0.54	2E-16		0.049	[0.037-0.061] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2376	chr1	234853405	234853406	rs558971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	1q42.3		rs558971-A	0.480931	2E-8		0.0219427	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234853405	234853406	rs558971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	1q42.3		rs558971-A	0.480931	2E-12		0.0272742	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234853405	234853406	rs558971	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	1q42.3	IRF2BP2	rs558971-A	0.47	5E-27	(Trans-ethnic initial)	0.0398	[0.033-0.047] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2376	chr1	234854778	234854779	rs684818	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	1q42.3		rs684818-C	0.481246	1E-8		0.0228243	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
2376	chr1	234854778	234854779	rs684818	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	1q42.3	AL160408.6	rs684818-?	NR	5E-12		1.158	[0.82-1.5] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2376	chr1	234857675	234857676	rs484084	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs484084-T	0.480115	3E-9		0.0246921	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234857675	234857676	rs484084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	1q42.3		rs484084-C	0.70586	2E-11		0.0267284	[0.019-0.034] unit increase	Illumina [13476599] (imputed)	N
2376	chr1	234857675	234857676	rs484084	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q42.3	intergenic	rs484084-T	0.4183	2E-31		0.033	[0.028-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	1q42.3		rs514230-A	0.482378	1E-9		0.0243502	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	7E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	5E-84		0.0465	[0.042-0.051] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	2E-16		0.0197	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	1E-74		0.0438	[0.039-0.049] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	3E-22		0.0233	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	4E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	4E-68		0.0418	[0.037-0.047] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-T	NR	1E-19		0.0227	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	1q42.3		rs514230-A	0.4715	9E-10	(EA)	1.1444	[0.78-1.51] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2376	chr1	234858596	234858597	rs514230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-A	NR	9E-18		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234858596	234858597	rs514230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-A	0.476	2E-16	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234858596	234858597	rs514230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-A	NR	2E-14		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234858596	234858597	rs514230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	1q42.3	NR	rs514230-A	0.476	9E-13	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2376	chr1	234858596	234858597	rs514230	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	1q42.3	IRF2BP2	rs514230-T	0.54	1E-11		0.041	[0.029-0.053] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2376	chr1	234858596	234858597	rs514230	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.3	IRF2BP2	rs514230-A	0.48	9E-12		0.036	[NR] unit decrease	NR [NR] (imputed)	N
2376	chr1	234858596	234858597	rs514230	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	1q42.3	IRF2BP2	rs514230-A	0.48	5E-14		0.039	[NR] unit decrease	NR [NR] (imputed)	N
2376	chr1	234858596	234858597	rs514230	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	1q42.3	IRF2BP2, TOMM20	rs514230-A	0.48	9E-12		1.13	[0.78-1.48] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2376	chr1	234858596	234858597	rs514230	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	1q42.3	IRF2BP2, TOMM20	rs514230-A	0.48	5E-14		1.36	[0.97-1.75] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2376	chr1	234863601	234863602	rs478425	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	1q42.3	NR	rs478425-T	0.37	1E-12		0.0134	[0.0097-0.0171] unit decrease	NR [NR]	N
2376	chr1	234864213	234864214	rs641154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	1q42.3		rs641154-C	0.506648	5E-8		0.021978	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234864213	234864214	rs641154	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	1q42.3	IRF2BP2	rs641154-?	NR	4E-8		0.0379	NR L increase	Affymetrix [9390170] (imputed)	N
2376	chr1	234866775	234866776	rs570530	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	1q42.3	RP4-781K5.8	rs570530-A	0.495536	7E-9		0.032541517	[0.022-0.044] unit decrease	Affymetrix [7288503] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	1E-10		0.0264832	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	6E-9		0.0237041	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	1E-9		0.0248758	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	4E-10		0.025429	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	2E-8		0.0229274	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	1E-10		0.0267303	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234872430	234872431	rs613334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	1q42.3		rs613334-G	0.496417	4E-9		0.0240025	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	1E-10		0.0266818	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	1E-9		0.0248701	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	5E-10		0.0255923	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	1q42.3		rs822928-A	0.470354	5E-9		0.0240148	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	1E-9		0.024787	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	3E-12		0.0288734	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	5E-12		0.0286763	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	2E-10		0.0258261	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	5E-10		0.0255072	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	4E-12		0.028751	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	2E-10		0.0263544	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	4E-11		0.0274708	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	2E-9		0.0241876	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	1q42.3		rs822928-A	0.47036	1E-11		0.0280944	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2376	chr1	234873274	234873275	rs822928	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	1q42.3		rs822928-A	0.45	9E-9		0.0512	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2376	chr1	234873274	234873275	rs822928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q42.3		rs822928-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2376	chr1	234875181	234875182	rs12039675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	1q42.3		rs12039675-C	0.499048	1E-8		0.0231686	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
2376	chr1	234878440	234878441	rs2587535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	1q42.3	NR	rs2587535-T	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234878440	234878441	rs2587535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	1q42.3	NR	rs2587535-T	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr1	234879889	234879890	rs3009958	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (eosinophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	1q42.3	LINC01132, IRF2BP2	rs3009958-A	0.015	6E-9		0.042	[0.41-0.43] unit increase	Illumina [27887661] (imputed)	N
2377	chr1	234906811	234906812	rs10910502	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	1q42.3	RNY4P16	rs10910502-T	0.648	4E-6	(Mean vigilance)	0.1567	[0.09-0.223] unit decrease	Affymetrix [8042262] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1q42.3		rs4626924-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3		rs4626924-T	0.551165	2E-50		0.033688843	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.3	intergenic	rs4626924-C	0.448818	6E-19		0.01987394	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q42.3	NR	rs4626924-T	0.550979	7E-19		0.016752	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q42.3		rs4626924-?	NR	2E-15				NR [~ 8900000] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q42.3	intergenic	rs4626924-T	0.5497	5E-19		0.03237743	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2377	chr1	234909297	234909298	rs4626924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q42.3	intergenic	rs4626924-T	0.5498	2E-17		0.03093424	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2377	chr1	234914693	234914694	rs553626126	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	1q42.3	NR	rs553626126-?	NR	9E-6		0.176503	[0.098-0.255] unit increase	Affymetrix [9658292] (imputed)	N
2377	chr1	234923843	234923844	rs2804800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.3	NR	rs2804800-A	0.578197	4E-18		0.020726828	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2377	chr1	234923843	234923844	rs2804800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.3		rs2804800-A	0.578191	2E-18		0.021109166	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2377	chr1	234925195	234925196	rs2804804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs2804804-G	0.611106	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
2377	chr1	234925195	234925196	rs2804804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs2804804-G	0.587716	1E-20				Affymetrix, Illumina [23114412] (imputed)	N
2377	chr1	234925195	234925196	rs2804804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q42.3	NR	rs2804804-G	0.549304	3E-23		0.021501	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2377	chr1	234928044	234928045	rs2065919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q42.3		rs2065919-G	NR	6E-12		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2377	chr1	234928044	234928045	rs2065919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q42.3		rs2065919-G	NR	4E-15		0.0203	[0.015-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2377	chr1	234955425	234955426	rs822834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.3		rs822834-G	0.9257771	8E-11		0.027973387	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2377	chr1	234955963	234955964	rs822835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q42.3		rs822835-C	0.9260173	1E-15		0.0340355	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2377	chr1	234971037	234971038	rs10752788	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	1q42.3	LOC107985365	rs10752788-G	0.58	2E-6		0.012	[0.0061-0.0179] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
2377	chr1	234977229	234977230	rs72752279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3	RNY4P16	rs72752279-G	0.083183	4E-12		0.028010592	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2377	chr1	234984987	234984988	rs2069084	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	1q42.3	intergenic	rs2069084-?	NR	6E-6	(progression)			Illumina [NR]	N
2377	chr1	234990899	234990900	rs58653258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	1q42.3	intergenic	rs58653258-C	0.0947	4E-10		0.03826984	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2377	chr1	235007115	235007116	rs6697464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q42.3		rs6697464-T	0.291433	4E-9		0.014881494	[0.0099-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
2378	chr1	235015125	235015126	rs2802954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q42.3	NR	rs2802954-C	NR	2E-10		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2378	chr1	235017927	235017928	rs1515658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q42.3		rs1515658-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2378	chr1	235033235	235033236	rs6586354	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antipsychotic drugs in severe mental disorder (concentration drug ratio)	Up to 829 European ancestry cases	NA	1q42.3	intergenic	rs6586354-A	0.226	1E-7		0.2802	[NR] unit decrease	Affymetrix [686595]	N
2378	chr1	235041318	235041319	rs2802993	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.3	NR	rs2802993-?	NR	4E-14				Affymetrix [NR]	N
2378	chr1	235092599	235092600	rs908327	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	1q42.3	TOMM20	rs908327-C		5E-10	(AA)			Illumina [NR]	N
2378	chr1	235094642	235094643	rs1878051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q42.3		rs1878051-A	NR	2E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2378	chr1	235095443	235095444	rs2802929	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	1q42.3	NR	rs2802929-?	NR	7E-7			[NR]	Illumina [5779266] (imputed)	N
2378	chr1	235096550	235096551	rs10910535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	1q42.3		rs10910535-T	NR	1E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2378	chr1	235097740	235097741	rs115441532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3	RP11-443B7.1	rs115441532-C	0.111858	2E-12		0.025366958	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2378	chr1	235097740	235097741	rs115441532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.3	RP11-443B7.1	rs115441532-C	0.11186	9E-12		0.02459202	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2378	chr1	235107863	235107864	rs34022603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	1q42.3	NR	rs34022603-T	NR	6E-10		0.0237	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
2378	chr1	235108307	235108308	rs16844296	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q42.3	TOMM20	rs16844296-G	0.787934	5E-9		0.0140569	[0.0093-0.0188] unit increase	Affymetrix [NR] (imputed)	N
2378	chr1	235109213	235109214	rs28631087	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	1q42.3	TOMM20	rs28631087-T	0.78726	2E-10		0.0161715	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
2378	chr1	235113007	235113008	rs72632294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3	RP11-443B7.3	rs72632294-A	0.042067	7E-14		0.041194882	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
2378	chr1	235113007	235113008	rs72632294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.3	RP11-443B7.3	rs72632294-A	0.042062	4E-13		0.03983608	[0.029-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
2379	chr1	235149260	235149261	rs57941271	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	1q42.3	TOMM20, SNORA14B, RBM34, ARID4B	rs57941271-A	NR	8E-7	(sleep onset irregularity)	0.07764	[0.047-0.109] unit increase	Affymetrix [7141204] (imputed)	N
2379	chr1	235179178	235179179	rs150999300	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	1q42.3	RP11-443B7.3	rs150999300-T	0.004	2E-6		0.4894	[0.29-0.69] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2379	chr1	235267126	235267127	rs11577354	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q42.3	TOMM20	rs11577354-G	0.445	7E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
2380	chr1	235317740	235317741	rs4660042	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q42.3		rs4660042-C	0.534	9E-9				Affymetrix [10369434] (imputed)	N
2380	chr1	235318710	235318711	rs112368830	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	1q42.3		rs112368830-T	NR	9E-6		1.44	[1.23-1.69]	Illumina [7105229] (imputed)	N
2380	chr1	235362959	235362960	rs10924970	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	1q42.3	ARID4B, RBM34, GGPS1	rs10924970-C	0.61	3E-6	(African)	1.25	[1.14-1.37]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
2380	chr1	235378897	235378898	rs7531922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q42.3		rs7531922-G	NR	2E-12		0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2381	chr1	235418702	235418703	rs10218590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3	ARID4B	rs10218590-A	0.456825	3E-17		0.018980674	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2381	chr1	235431791	235431792	rs12402243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.3	ARID4B	rs12402243-C	0.473102	2E-9		0.013274605	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
2381	chr1	235454987	235454987	rs146104952	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	1q42.3	NR	rs146104952-CCAAAAAATA	0.11479300000000003	3E-17		0.0107525	[0.0082-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
2381	chr1	235454987	235454987	rs146104952	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	1q42.3	NR	rs146104952-CCAAAAAATA	0.11419400000000002	2E-9		0.0110772	[0.0072-0.0149] unit increase	Affymetrix [16585854] (imputed)	N
2381	chr1	235454987	235454987	rs146104952	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	1q42.3	NR	rs146104952-CCAAAAAATA	0.11479300000000003	6E-14		0.0108663	[0.008-0.0138] unit increase	Affymetrix [16582965] (imputed)	N
2381	chr1	235454987	235454987	rs146104952	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	1q42.3	NR	rs146104952-CCAAAAAATA	0.11419400000000002	5E-7		0.0109179	[0.0065-0.0153] unit increase	Affymetrix [16585866] (imputed)	N
2381	chr1	235466246	235466247	rs72758052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q42.3	ARID4B	rs72758052-C	0.119222	1E-10		0.02239222	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2381	chr1	235467606	235467607	rs144647926	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	1q42.3	NR	rs144647926-A	0.08738199999999996	1E-10		0.0126113	[0.0086-0.0166] unit increase	Affymetrix [16582621] (imputed)	N
2381	chr1	235467606	235467607	rs144647926	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	1q42.3	NR	rs144647926-A	0.08738199999999996	1E-9		0.0123175	[0.0081-0.0166] unit increase	Affymetrix [16582614] (imputed)	N
2381	chr1	235506852	235506853	rs2803841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q42.3		rs2803841-?	NR	3E-20				NR [~ 8900000] (imputed)	N
2381	chr1	235531450	235531451	rs1977748	32652002	Dauber A	2020-07-11	J Clin Endocrinol Metab	A Genomewide Pharmacogenetic Study of Growth Hormone Responsiveness.	First year height change in growth hormone-treated short stature	504 European ancestry individuals, 88 individuals	113 Brazilian individuals	1q42.3	TBCE	rs1977748-T	0.411	2E-6		0.254	[0.15-0.36] unit decrease	Illumina [~ 2000000] (imputed)	N
2382	chr1	235542022	235542023	rs10737818	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	1q42.3	NR	rs10737818-G	0.6385	7E-10		0.0395	[0.027-0.052] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2382	chr1	235542022	235542023	rs10737818	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	1q42.3	NR	rs10737818-G	0.622	2E-11		0.0352	[0.025-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2382	chr1	235558803	235558804	rs6687021	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q42.3	Intergenic	rs6687021-C	0.6015	5E-14		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2382	chr1	235573485	235573486	rs10925635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TBCE	5,365 Icelandic ancestry individuals	NA	1q42.3		rs10925635-A	0.3444	2E-21		0.184701	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
2382	chr1	235575320	235575321	rs4659520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q42.3	Intergenic	rs4659520-T	0.5262	8E-11	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2382	chr1	235576948	235576949	rs9662392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q42.3	Intergenic	rs9662392-T	0.5088	3E-14	(MTAG)	0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2382	chr1	235576948	235576949	rs9662392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q42.3	Intergenic	rs9662392-G	0.4912	1E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2382	chr1	235594950	235594951	rs10802708	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q42.3	TBCE	rs10802708-C	0.64765625	2E-9	(TBCE, 11211_7_3)	0.15399054	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
2382	chr1	235597251	235597252	rs12405889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q42.3	Intergenic	rs12405889-T	0.4853	3E-19	(MTAG)	0.0148	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2382	chr1	235597251	235597252	rs12405889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q42.3		rs12405889-T	0.489	2E-12		0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2382	chr1	235597251	235597252	rs12405889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q42.3	Intergenic	rs12405889-T	0.489	2E-16	(MTAG)	0.0108	[0.0083-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2382	chr1	235600128	235600129	rs6429082	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	1q42.3	TBCE	rs6429082-C	0.4849	8E-10		0.012410674	[0.0084-0.0164] unit increase	Affymetrix [up to 18485882] (imputed)	N
2382	chr1	235600128	235600129	rs6429082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q42.3		rs6429082-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2382	chr1	235600128	235600129	rs6429082	19557161	Lindgren CM	2009-06-26	PLoS Genet	Genome-wide association scan meta-analysis identifies three Loci influencing adiposity and fat distribution.	Adiposity	38,580 European ancestry individuals	Up to 102,064 European ancestry individuals	1q42.3	TBCE	rs6429082-C	0.46	3E-7	(WC)			Affymetrix, Illumina [2573738] (imputed)	N
2382	chr1	235656631	235656632	rs9786986	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	1q42.3	B3GALNT2	rs9786986-T	0.11	2E-9		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
2383	chr1	235690799	235690800	rs291367	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	1q42.3	GNG4	rs291367-G	0.6322	5E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2383	chr1	235696312	235696313	rs452154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q42.3		rs452154-G	NR	3E-10		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2383	chr1	235696939	235696940	rs10925930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q42.3		rs10925930-G	NR	2E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2383	chr1	235707208	235707209	rs74966328	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	1q42.3	NR	rs74966328-G		2E-6		0.293	[0.17-0.41] SD units increase	NR [10700000] (imputed)	N
2383	chr1	235720897	235720898	rs291353	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	1q42.3	GNG4	rs291353-?	NR	6E-6	(age at natural menopause)			Affymetrix [70897]	N
2383	chr1	235754242	235754243	rs2774316	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q42.3	NR	rs2774316-?	NR	9E-10				Affymetrix [NR]	N
2383	chr1	235775016	235775017	rs6429197	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1q42.3	NR	rs6429197-C	NR	7E-6		0.384576	[0.22-0.55] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
2383	chr1	235797344	235797345	rs140320399	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	1q42.3	GNG4	rs140320399-G	0.01	5E-8		0.4389	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2384	chr1	235822406	235822407	rs201540352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q42.3	LYST	rs201540352-C	0.550184	1E-9		0.014302194	[0.0097-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
2384	chr1	235853354	235853355	rs76184221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q42.3		rs76184221-C	NR	1E-10		0.0242	[0.017-0.032] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2384	chr1	235853354	235853355	rs76184221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q42.3	LYST	rs76184221-C	0.11364	1E-13		0.025770022	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2384	chr1	235854998	235854999	rs72761800	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	1q42.3		rs72761800-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2384	chr1	235854998	235854999	rs72761800	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q42.3		rs72761800-C	0.482	5E-9				Affymetrix [10369434] (imputed)	N
2384	chr1	235860339	235860340	rs7541057	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q42.3		rs7541057-C	0.486	6E-18				Affymetrix [10369434] (imputed)	N
2384	chr1	235912024	235912025	rs1078859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q42.3		rs1078859-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2385	chr1	236025872	236025873	rs187730847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q42.3	LYST	rs187730847-G	0.994	5E-6	(AA)	0.122	unit increase	Illumina [NR] (imputed)	N
2385	chr1	236028840	236028841	rs4660116	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	1q42.3	LYST	rs4660116-C		2E-7		1.17	[NR]	Illumina [> 644674] (imputed)	N
2385	chr1	236039876	236039877	rs9782955	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	1q42.3	LYST	rs9782955-C		1E-9		1.16	[1.11-1.22]	Illumina [644674]	N
2385	chr1	236039876	236039877	rs9782955	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	1q42.3	LYST	rs9782955-C	0.74	5E-7		1.18	[1.11-1.26]	Illumina [~ 2100000] (imputed)	N
2385	chr1	236046377	236046378	rs10803124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q42.3		rs10803124-?	NR	5E-15				NR [~ 8900000] (imputed)	N
2386	chr1	236087991	236087992	rs4660128	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q42.3		rs4660128-T	0.103	3E-13				Affymetrix [10369434] (imputed)	N
2386	chr1	236087991	236087992	rs4660128	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	1q42.3		rs4660128-T	0.103	4E-15				Affymetrix [10369434] (imputed)	N
2386	chr1	236087991	236087992	rs4660128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs4660128-C	0.898996	5E-13				Affymetrix, Illumina [23472807] (imputed)	N
2386	chr1	236087991	236087992	rs4660128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q42.3	NR	rs4660128-C	0.896961	3E-15		0.024767	[0.019-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.892	6E-31		0.06737916	[0.056-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.8919	2E-28		0.06433306	[0.053-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.8919	6E-27		0.06260159	[0.051-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.8919	3E-29		0.06529684	[0.054-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.892	5E-31		0.06772182	[0.056-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236090154	236090155	rs2208568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q42.3	intergenic	rs2208568-C	0.8919	5E-26		0.06150571	[0.05-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236097743	236097748	rs72138724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q42.3		rs72138724-A	0.88381	3E-13		0.025245786	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2386	chr1	236101039	236101040	rs74148933	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	1q42.3	NR	rs74148933-T	NR	2E-6		2.249	[1.61-3.14]	Illumina [13976150] (imputed)	N
2386	chr1	236102885	236102886	rs6701752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs6701752-A	0.893891	4E-155				Affymetrix, Illumina [23467995] (imputed)	N
2386	chr1	236102885	236102886	rs6701752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs6701752-A	0.8923	1E-41		0.07659441	[0.065-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236102885	236102886	rs6701752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs6701752-A	0.8923	4E-21		0.05459317	[0.043-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236102885	236102886	rs6701752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs6701752-A	0.8924	3E-82		0.1080388	[0.097-0.119] unit increase	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236102885	236102886	rs6701752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs6701752-A	0.8923	2E-81		0.1083501	[0.097-0.119] unit increase	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236103964	236103965	rs10927074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q42.3		rs10927074-C	NR	7E-107		0.0819	[0.075-0.089] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2386	chr1	236103964	236103965	rs10927074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	1q42.3		rs10927074-T	0.108	1E-27				Affymetrix [10369434] (imputed)	N
2386	chr1	236104541	236104542	rs370718489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs370718489-G	0.892427	4E-190		0.109150484	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
2386	chr1	236104541	236104542	rs370718489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs370718489-G	0.892435	1E-133		0.088249065	[0.081-0.095] unit increase	Affymetrix [93095623] (imputed)	N
2386	chr1	236104541	236104541	rs200549504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q42.3	NR	rs200549504-D	0.892341	5E-165		0.088726	[0.082-0.095] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2386	chr1	236104541	236104541	rs200549504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q42.3	NR	rs200549504-D	0.892403	5E-130		0.082938	[0.076-0.09] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs9970896-T	0.887671	2E-71		0.06232511	[0.055-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs9970896-T	0.887669	8E-16		0.028177956	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs9970896-T	0.887652	2E-67		0.060563985	[0.054-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs9970896-T	0.887692	2E-18		0.03055228	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q42.3		rs9970896-?	NR	3E-68				NR [~ 8900000] (imputed)	N
2386	chr1	236104980	236104981	rs9970896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs9970896-T	0.8876	1E-11		0.03827854	[0.027-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q42.3		rs1886654-C	NR	1E-46		0.0549	[0.047-0.062] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q42.3		rs1886654-C	NR	2E-48		0.056	[0.049-0.063] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	1q42.3		rs1886654-C	NR	3E-40		0.0431	[0.037-0.049] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1q42.3		rs1886654-T	0.108	9E-32				Affymetrix [10369434] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q42.3		rs1886654-T	0.108	4E-71				Affymetrix [10369434] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs1886654-C	0.895898	2E-81				Affymetrix, Illumina [24649327] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q42.3	NR	rs1886654-C	0.892184	5E-84		0.057486	[0.052-0.063] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs1886654-C	0.894316	1E-78				Affymetrix, Illumina [23114412] (imputed)	N
2386	chr1	236105909	236105910	rs1886654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q42.3	NR	rs1886654-C	0.892013	3E-80		0.058459	[0.052-0.064] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2386	chr1	236107240	236107241	rs6429432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs6429432-C	0.891542	9E-44		0.0493125	[0.042-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
2386	chr1	236107240	236107241	rs6429432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q42.3	RP5-940F7.2	rs6429432-A	0.108459	1E-146		0.09146527	[0.085-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
2386	chr1	236107240	236107241	rs6429432	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q42.3	RP5-940F7.2	rs6429432-C	0.8917	9E-49		0.08453104	[0.073-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2386	chr1	236109100	236109101	rs10803164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs10803164-A	0.899072	1E-123				Affymetrix, Illumina [19905671] (imputed)	N
2386	chr1	236130068	236130069	rs10927116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	1q42.3		rs10927116-C	0.785	3E-9				Affymetrix [10369434] (imputed)	N
2386	chr1	236135742	236135743	rs77581229	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q42.3	NID1	rs77581229-C	0.0143658706303237	6E-6	(G_Gemmiger_HB)	1.31781	[0.75-1.89] unit decrease	Illumina [7711310] (imputed)	N
2386	chr1	236162676	236162677	rs760491413	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	1q42.3	NID1	rs760491413-A	5.0E-4	3E-6		6.99	[3.11-15.7]	Illumina [32463443] (imputed)	N
2386	chr1	236166967	236166968	rs140964551	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	1q42.3		rs140964551-?	NR	7E-7				Affymetrix, Illumina [29826485] (imputed)	N
2386	chr1	236179868	236179869	rs3768080	21478494	Nan H	2011-04-09	Hum Mol Genet	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	1q42.3	NID1	rs3768080-A	0.51	7E-8		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [2318094] (imputed)	N
2386	chr1	236181103	236181104	rs10927263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	1q42.3		rs10927263-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2386	chr1	236186696	236186697	rs12401457	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	1q42.3	NID1	rs12401457-G	0.88	9E-6	(men)	0.097	[0.054-0.14] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
2387	chr1	236205703	236205704	rs12033187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q42.3	NID1	rs12033187-T	0.426528	1E-12		0.016037673	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2387	chr1	236205703	236205704	rs12033187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q42.3	NR	rs12033187-C	0.568517	2E-12				Affymetrix, Illumina [17210439] (imputed)	N
2387	chr1	236205703	236205704	rs12033187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q42.3	NR	rs12033187-C	0.573683	6E-14		0.014483	[0.011-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2387	chr1	236212898	236212899	rs4660151	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CGREF1	5,355 Icelandic ancestry individuals	NA	1q42.3		rs4660151-G	0.2511	5E-18		0.178053	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2387	chr1	236218003	236218004	rs72765466	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	1q42.3	NID1	rs72765466-?	NR	6E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
2387	chr1	236218003	236218004	rs72765466	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q42.3	NR	rs72765466-C	0.75875	3E-10	(CGREF1, 6257_56_3)	0.17939934	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
2387	chr1	236218003	236218004	rs72765466	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q42.3	NR	rs72765466-C	0.75875	2E-15	(NID1, 3213_65_2)	0.22714728	[0.17-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
2387	chr1	236220573	236220574	rs12409606	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NID1	5,362 Icelandic ancestry individuals	NA	1q42.3		rs12409606-C	0.2489	4E-25		0.220628	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
2387	chr1	236260643	236260644	rs10924182	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	1q42.3	NR	rs10924182-G	0.04176	2E-6		0.3666	[0.22-0.52] unit increase	Illumina [10677593] (imputed)	N
2387	chr1	236263680	236263681	rs17619300	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q42.3	GPR137B	rs17619300-?	NR	3E-6	(SM 14:0)	0.2550457	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2387	chr1	236277477	236277478	rs57510430	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	1q42.3	NR	rs57510430-?		1E-5		2.07	[1.50-2.86]	Illumina [539473] (imputed)	N
2387	chr1	236279246	236279247	rs141554723	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	1q42.3	intergenic	rs141554723-T	NR	5E-6		0.541391	[0.3-0.78] unit increase	Illumina [7433384] (imputed)	N
2387	chr1	236283206	236283207	rs76275565	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NID1	5,362 Icelandic ancestry individuals	NA	1q42.3		rs76275565-A	0.01918	2E-94		1.36146	[1.23-1.49] unit decrease	Illumina [7506463] (imputed)	N
2387	chr1	236283206	236283207	rs76275565	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CGREF1	5,355 Icelandic ancestry individuals	NA	1q42.3		rs76275565-A	0.01918	4E-62		1.067	[0.94-1.19] unit decrease	Illumina [7506463] (imputed)	N
2387	chr1	236296321	236296322	rs6689479	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	1q42.3	intergenic	rs6689479-G	0.06	6E-6	(female)	0.816	[0.47-1.17] unit decrease	Illumina [6380737] (imputed)	N
2387	chr1	236303123	236303124	rs138068869	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q42.3	GPR137B	rs138068869-A	0.0024	1E-6		1.8463	[1.1-2.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2387	chr1	236305249	236305250	rs7511796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q42.3		rs7511796-A	NR	5E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
2387	chr1	236312325	236312326	rs10924372	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q42.3	NR	rs10924372-C	0.371762	6E-12		0.0142832	[0.01-0.018] unit increase	NR [NR]	N
2387	chr1	236313126	236313127	rs7520258	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	1q42.3	GPR137B	rs7520258-?	0.07	5E-7	(olanzapine)			Affymetrix [492900]	N
2388	chr1	236326004	236326005	rs6428947	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.3	GPR137B	rs6428947-C		5E-7		0.253	unit increase	Affymetrix [at least 2696785] (imputed)	N
2388	chr1	236326004	236326005	rs6428947	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q42.3	GPR137B	rs6428947-C		6E-6		0.206	unit increase	Affymetrix [at least 2696785] (imputed)	N
2388	chr1	236326004	236326005	rs6428947	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q42.3	GPR137B	rs6428947-C		3E-11		0.205	unit increase	Affymetrix [at least 2696785] (imputed)	N
2388	chr1	236347179	236347180	rs142455477	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	1q42.3		rs142455477-?	NR	4E-8		0.193815	[0.12-0.27] unit decrease	NR [9800000] (imputed)	N
2388	chr1	236379148	236379149	rs2449	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q42.3		rs2449-C	0.26	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
2388	chr1	236379148	236379149	rs2449	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q42.3		rs2449-C	0.26	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
2388	chr1	236379148	236379149	rs2449	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q42.3	NR	rs2449-C	0.2584	2E-8				NR [9056863] (imputed)	N
2388	chr1	236380610	236380611	rs1726631	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERO1B	5,368 Icelandic ancestry individuals	NA	1q42.3		rs1726631-T	0.4304	1E-69		0.33368	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
2388	chr1	236384670	236384670	rs10700042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	1q42.3		rs10700042-CAT	NR	4E-8		0.0403	[0.026-0.055] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2388	chr1	236386468	236386469	rs1726625	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	1q42.3	ERO1LB	rs1726625-A	0.4240625	9E-37	(ERO1LB, 7994_41_3)	0.31433362	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
2388	chr1	236399441	236399442	rs1254194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q42.3	ERO1LB	rs1254194-T	0.596	2E-56	(ERO1-like protein beta, ERO1LB.7994.41.3)	0.38	[0.34-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
2388	chr1	236439915	236439916	rs6662005	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	1q42.3	ERO1LB	rs6662005-A	NR	5E-7		1.71	[1.39-2.12]	NR [7738399] (imputed)	N
2389	chr1	236470733	236470734	rs12135191	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	1q42.3	ERO1LB, EDARADD	rs12135191-C	0.52	1E-7	(Combined sex)	0.008	[0.0041-0.0119] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
2389	chr1	236490677	236490678	rs12134040	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	1q42.3	ERO1LB, EDARADD	rs12134040-G	0.44	6E-6	(Women)	0.00955155	[0.0054-0.0137] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
2389	chr1	236492499	236492500	rs142677168	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1q42.3	NR	rs142677168-A	0.01	3E-6		1.79	[1.54-2.04]	Illumina [8468885] (imputed)	N
2389	chr1	236515834	236515835	rs12143612	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	1q42.3	NR	rs12143612-?	NR	3E-8				Affymetrix, Illumina [6211246] (imputed)	N
2389	chr1	236515834	236515835	rs12143612	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	1q42.3	NR	rs12143612-?	NR	4E-15				Affymetrix, Illumina [6210360] (imputed)	N
2389	chr1	236519501	236519502	rs1726672	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	1q42.3	NR	rs1726672-T	0.3036	6E-10		0.2038	[0.14-0.27] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
2389	chr1	236525446	236525447	rs678553	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	1q42.3	NR	rs678553-C	0.3108	2E-15		0.3265	[0.25-0.41] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
2389	chr1	236560296	236560297	rs78133413	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q42.3	NR	rs78133413-?	NR	2E-6	(EA)	13.843917	[8.21-19.48] unit decrease	Affymetrix [at least 600000] (imputed)	N
2389	chr1	236560296	236560297	rs78133413	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	1q42.3	NR	rs78133413-?	NR	2E-6		13.857	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2389	chr1	236569845	236569846	rs75762973	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs75762973-?	NR	1E-8				Affymetrix [NR] (imputed)	N
2389	chr1	236574347	236574348	rs78075786	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs78075786-?	NR	2E-8				Affymetrix [NR] (imputed)	N
2389	chr1	236578526	236578527	rs12122692	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs12122692-?	NR	2E-8				Affymetrix [NR] (imputed)	N
2390	chr1	236585777	236585778	rs77896710	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs77896710-?	NR	2E-8				Affymetrix [NR] (imputed)	N
2390	chr1	236587905	236587906	rs12561780	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs12561780-?	NR	2E-8				Affymetrix [NR] (imputed)	N
2390	chr1	236588131	236588132	rs78100448	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	1q43		rs78100448-?	NR	2E-8				Affymetrix [NR] (imputed)	N
2390	chr1	236620412	236620413	rs35440803	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	1q43		rs35440803-?	NR	8E-6				Illumina [7401356] (imputed)	N
2390	chr1	236629133	236629134	rs12117927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	1q43		rs12117927-A	NR	2E-9		0.0627	[0.042-0.083] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
2390	chr1	236629133	236629134	rs12117927	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	1q43	EDARADD	rs12117927-A	0.484	2E-11		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2390	chr1	236629133	236629134	rs12117927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	1q43		rs12117927-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2390	chr1	236658509	236658510	rs181126208	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		1q43	intergenic	rs181126208-?	NR	7E-8	(AA)	0.066	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
2390	chr1	236672003	236672004	rs6689881	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	1q43	NR	rs6689881-T	NR	6E-6		1.1853	NR	Illumina [at least 560000] (imputed)	N
2390	chr1	236702881	236702882	rs66877117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q43	LGALS8	rs66877117-A	0.679677	2E-16		0.020150946	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2390	chr1	236702923	236702923	rs34070242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q43	LGALS8	rs34070242-GCT	0.682059	2E-14		0.01890025	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2390	chr1	236702923	236702923	rs34070242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q43	LGALS8	rs34070242-GCT	0.682048	6E-16		0.019959968	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2390	chr1	236703766	236703767	rs2758994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q43	NR	rs2758994-T	0.718206	6E-18		0.017536	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2391	chr1	236718619	236718620	rs1126627	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	1q43	HEATR1	rs1126627-T	0.3758	9E-10		0.0118	[0.0081-0.0155] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2391	chr1	236723590	236723591	rs142229238	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	1q43	NR	rs142229238-C	0.0	1E-6		2.58	[2.21-2.95]	Illumina [8468885] (imputed)	N
2391	chr1	236736846	236736847	rs398089984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q43		rs398089984-A	NR	8E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2391	chr1	236739415	236739416	rs2115740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs2115740-T	0.690923	2E-16				Affymetrix, Illumina [24588908] (imputed)	N
2391	chr1	236747560	236747561	rs150174091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	HEATR1	rs150174091-G	0.999	5E-6	(AA)	0.262	unit increase	Illumina [NR] (imputed)	N
2391	chr1	236782804	236782805	rs1341858	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	ACTN2	rs1341858-?	NR	7E-6	(SM 22:0)	1.5298871	[0.86-2.2] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2392	chr1	236854972	236854973	rs12142143	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	1q43	NR	rs12142143-C	0.541	2E-9		0.00881325	[0.0059-0.0117] unit decrease	NR [9732723] (imputed)	N
2392	chr1	236872828	236872829	rs12563365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q43	NR	rs12563365-A	0.556	3E-14		0.00828053	[0.0061-0.0104] unit increase	NR [9732723] (imputed)	N
2392	chr1	236872828	236872829	rs12563365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q43	NR	rs12563365-A	0.556	1E-10		0.016558949	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
2392	chr1	236876256	236876257	rs4659704	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q43		rs4659704-C	0.442	4E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
2392	chr1	236912056	236912057	rs12048046	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	1q43	ACTN2	rs12048046-T	0.9	3E-6	(Age 20-81 years)	1.52	[1.28-1.81]	Affymetrix, Illumina [up to 17585496] (imputed)	N
2392	chr1	236960696	236960697	rs72762109	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	1q43	MTR	rs72762109-G	0.01	2E-6		16.666668	[5-50]	Affymetrix, Illumina [up to 7729175] (imputed)	N
2393	chr1	237048675	237048676	rs2275565	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	1q43	MTR	rs2275565-T	0.21	2E-10		0.0542	[0.037-0.072] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
2393	chr1	237079691	237079692	rs16834552	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	1q43		rs16834552-?	NR	9E-7		0.498	[0.377-0.658]	Affymetrix [7975321] (imputed)	N
2394	chr1	237194921	237194922	rs10802580	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	1q43		rs10802580-A	0.222175	7E-10		0.0523084	[0.036-0.069] decrease	Affymetrix [NR]	N
2394	chr1	237194921	237194922	rs10802580	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q43	RYR2	rs10802580-G	0.76	7E-9		0.45	[0.29-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2394	chr1	237194921	237194922	rs10802580	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q43	RYR2	rs10802580-G	0.7679	7E-9		0.4732	[0.31-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2395	chr1	237266602	237266603	rs7554607	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	1q43	RYR2	rs7554607-A	0.56	2E-6		1.49	[1.20-1.70]	Affymetrix [307944]	N
2395	chr1	237326973	237326974	rs2490361	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	1q43	Intergenic	rs2490361-?	NR	7E-6		1.36	[NR]	Affymetrix [492217] (imputed)	N
2395	chr1	237349737	237349738	rs6683225	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	RYR2	rs6683225-G	0.433	2E-6	(Cystathionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
2395	chr1	237355984	237355985	rs268786	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	RYR2	rs268786-C	0.014	8E-6	(Free T3 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
2396	chr1	237450432	237450433	rs10925358	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q43	NR	rs10925358-T	0.452	3E-7		0.00583641	[0.0036-0.0081] unit decrease	NR [9732723] (imputed)	N
2396	chr1	237490740	237490741	rs7535911	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	MT1P2	rs7535911-?	NR	7E-6	(salicylurate)	0.6174842	[0.35-0.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
2397	chr1	237511540	237511541	rs192540202	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative stroke after cardiac surgery	17 cases, 1,089 controls	NA	1q43	RYR2	rs192540202-?	NR	6E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and renal failure)	50.0	[12.5-?]	Illumina [9007469] (imputed)	N
2397	chr1	237558418	237558419	rs140263733	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1q43	NR	rs140263733-?	NR	4E-7		0.427694	[0.26-0.59] unit decrease	NR [13958389] (imputed)	N
2397	chr1	237559536	237559537	rs6677658	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	1q43	NR	rs6677658-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
2397	chr1	237565708	237565709	rs200918659	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	1q43	RYR2	rs200918659-?	NR	5E-9	(triglycerides)	0.33	[0.21-0.45] unit increase	Illumina [14948665] (imputed)	N
2397	chr1	237565708	237565709	rs12041884	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	1q43		rs12041884-?	NR	9E-6		0.3997		Illumina [5932083] (imputed)	N
2397	chr1	237569716	237569717	rs10802610	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (increased sleep) in depressive disorders	128 European ancestry cases, 223 European ancestry controls	NA	1q43		rs10802610-?	NR	9E-6		0.4045		Illumina [5932083] (imputed)	N
2397	chr1	237588464	237588465	rs7528353	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	1q43	NR	rs7528353-?	NR	3E-6		0.0191	[0.011-0.027] unit decrease	Illumina [~ 7800000] (imputed)	N
2397	chr1	237598415	237598416	rs7529251	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q43	NR	rs7529251-C	0.907539242683476	3E-7	(IGP16)	0.2765	[0.17-0.38] unit decrease	Illumina [~ 2500000] (imputed)	N
2397	chr1	237621238	237621239	rs1478912	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1q43	RYR2	rs1478912-?	NR	6E-6				Affymetrix, Illumina [~ 1300000]	N
2398	chr1	237659146	237659147	rs10495397	33613413	Park KW	2021-02-04	Front Neurol	Genomic Association Study for Cognitive Impairment in Parkinson's Disease.	cognitive impairment (MMSE score) in Parkinson's disease	347 Korean ancestry MMSE score <26 individuals, 682 Korean ancestry MMSE score >=26 individuals	NA	1q43	RYR2	rs10495397-?		3E-6		3.21	[1.96-5.25]	NR [563715]	N
2398	chr1	237729517	237729518	rs2618720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs2618720-A	0.02439	7E-9	(ARSA)	0.004652	NR unit increase	Illumina [1671387] (imputed)	N
2398	chr1	237729517	237729518	rs2618720	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs2618720-A	0.02439	3E-8	(NAGA)	0.001241	NR unit increase	Illumina [1671387] (imputed)	N
2398	chr1	237743895	237743896	rs2255179	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs2255179-T	0.02439	7E-9	(ARSA)	0.004652	NR unit increase	Illumina [1671387] (imputed)	N
2398	chr1	237743895	237743896	rs2255179	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs2255179-T	0.02439	3E-8	(NAGA)	0.001241	NR unit increase	Illumina [1671387] (imputed)	N
2399	chr1	237765656	237765657	rs3820572	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q43	NR	rs3820572-?	NR	4E-6				Affymetrix [NR]	N
2399	chr1	237816949	237816950	rs143294628	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	1q43	NR	rs143294628-?	NR	3E-6		2.1999	[0.94-3.46] unit decrease	Illumina [at least 560000] (imputed)	N
2399	chr1	237841389	237841390	rs34967813	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	1q43	RYR2	rs34967813-G	0.31	8E-7		0.011	[0.0065-0.0155] unit decrease	Illumina [~ 250000] (imputed)	N
2399	chr1	237852082	237852083	rs876793	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q43	NR	rs876793-C	0.349	2E-11		0.00781438	[0.0055-0.0101] unit decrease	NR [9732723] (imputed)	N
2399	chr1	237852082	237852083	rs876793	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	1q43	NR	rs876793-C	0.349262	6E-11	(Conditioned on chr1:236872829)	0.0179245	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
2399	chr1	237852082	237852083	rs876793	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	1q43	RYR2	rs876793-C	0.2	3E-7	(TG)	0.009	mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
2399	chr1	237859754	237859755	rs4659805	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q43		rs4659805-G	0.391	2E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
2399	chr1	237859754	237859755	rs4659805	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q43	RYR2	rs4659805-T	0.622	3E-9		0.0072	[0.0048-0.0096] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2399	chr1	237863717	237863718	rs2797436	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q43	NR	rs2797436-?	NR	7E-7				Affymetrix [NR]	N
2400	chr1	237898434	237898435	rs2685295	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	1q43	RYR2	rs2685295-A	0.61	7E-6		1.724138	[NR]	Affymetrix [703012]	N
2400	chr1	237911003	237911004	rs2819770	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	1q43	RYR2	rs2819770-?	NR	4E-6	(S2EHR)			Affymetrix [70897]	N
2400	chr1	237913280	237913281	rs10925507	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	1q43	NR	rs10925507-A		8E-6		0.27	[0.17-0.37] unit increase	NR [5896100] (imputed)	N
2400	chr1	237941780	237941781	rs3766889	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q43	NR	rs3766889-?	NR	8E-7	(African)	54.87	[33.11-76.63] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
2400	chr1	237941780	237941781	rs3766889	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		1q43	RYR2	rs3766889-T	0.82	4E-8	(African)	52.21	[33.55-70.87] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
2400	chr1	237974719	237974720	rs813173	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q43	RYR2	rs813173-?		4E-6				Illumina [4322238] (imputed)	N
2400	chr1	237990121	237990122	rs2819742	21386754	Marciante KD	2011-03-06	Pharmacogenet Genomics	Cerivastatin, genetic variants, and the risk of rhabdomyolysis.	Cerivastatin-induced rhabdomyolysis	168 European ancestry cases, 636 European ancestry controls, 17 cases, 96 controls	NA	1q43	RYR2	rs2819742-G	0.62	2E-7		2.08	[1.59-2.78]	Illumina [292461]	N
2400	chr1	237993034	237993035	rs1891248	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q43	RYR2	rs1891248-T	0.451	4E-8		0.0065	[0.0041-0.0089] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
2401	chr1	238103500	238103501	rs2499604	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	1q43	ZP4	rs2499604-A	0.44	2E-6		0.39	[NR] unit decrease	Illumina [324623]	N
2401	chr1	238130841	238130842	rs1490276	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	1q43	ZP4	rs1490276-?		7E-10				Affymetrix, Illumina [NR] (imputed)	N
2402	chr1	238179190	238179191	rs12058112	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	RYR2	rs12058112-?	NR	2E-6	(uridine)	0.17335589	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2402	chr1	238264226	238264227	rs16836338	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q43	NR	rs16836338-?	NR	2E-10				Affymetrix [NR]	N
2403	chr1	238291347	238291348	rs6684897	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	1q43	MTRNR2L11	rs6684897-G		9E-7	(AA)	1.8867927	[1.1-3.23]	Affymetrix, Illumina [NR] (imputed)	N
2403	chr1	238308601	238308602	rs1361277	24736177	Sprooten E	2014-04-13	Neuroimage	Common genetic variants and gene expression associated with white matter microstructure in the human brain.	White matter microstructure (global fractional anisotropy)	727 Mexican American individuals from 65 families, 49 Mexican American individuals	NA	1q43	intergenic	rs1361277-?		2E-8				Illumina [929187]	N
2403	chr1	238409444	238409445	rs12084151	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	1q43	intergenic	rs12084151-G	0.9493	7E-6	(Ordinal I)	0.3896	[0.22-0.56] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2404	chr1	238433004	238433005	rs6681366	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q43	NR	rs6681366-?	NR	3E-6		4.687	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2404	chr1	238461304	238461305	rs71644921	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs71644921-G	0.0122	1E-9	(SERPINA3)	0.2443	NR unit increase	Illumina [1671387] (imputed)	N
2404	chr1	238472228	238472229	rs78323295	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs78323295-C	0.01916	2E-12	(F2)	0.0305	NR unit increase	Illumina [1671387] (imputed)	N
2404	chr1	238506861	238506862	rs78947064	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs78947064-C	0.01916	2E-12	(F2)	0.0305	NR unit increase	Illumina [1671387] (imputed)	N
2404	chr1	238512656	238512657	rs7527000	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	1q43	NR	rs7527000-?		9E-6				Illumina [4322238] (imputed)	N
2405	chr1	238669775	238669776	rs6692700	23698163	Gong J	2013-05-21	Nutrients	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	1q43	NA	rs6692700-?	NR	2E-6		0.04	[0.024-0.056] mg/dL increase	Illumina [2474333]	N
2406	chr1	238697422	238697423	rs74148523	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs74148523-T	0.0122	3E-9	(LRG1)	0.05549	NR unit increase	Illumina [1671387] (imputed)	N
2406	chr1	238722871	238722872	rs1410258	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	1q43	NR	rs1410258-?	NR	5E-6		2.572	[NR]	Illumina [4196861] (imputed)	N
2406	chr1	238724740	238724741	rs10754644	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	1q43	intergenic	rs10754644-G	NR	7E-6		0.09	[0.051-0.129] unit increase	Illumina [628922]	N
2406	chr1	238729432	238729433	rs116233900	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q43	NR	rs116233900-T	NR	1E-7	(GEE model)	1.0543	[0.67-1.44] unit decrease	NR [NR] (imputed)	N
2406	chr1	238740358	238740359	rs77950315	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	1q43	NR	rs77950315-A	0.0400777	4E-6		1.8343211	[1.1-2.57] unit increase	Illumina [at least 621854] (imputed)	N
2406	chr1	238753915	238753916	rs559047	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	Stimulated C-peptide levels in type I diabetes	1,303 European ancestry individuals	NA	1q43	ZP4, LINCO1139	rs559047-A	0.24	4E-6		0.28	[0.16-0.40] unit decrease	Illumina [8978838] (imputed)	N
2406	chr1	238753915	238753916	rs559047	29404672	Roshandel D	2018-02-05	Diabetologia	Meta-genome-wide association studies identify a locus on chromosome 1 and multiple variants in the MHC region for serum C-peptide in type 1 diabetes.	C-peptide levels in type I diabetes	3,479 European ancestry individuals	NA	1q43	ZP4, LINCO1139	rs559047-A	0.23	4E-8				Illumina [7988630] (imputed)	N
2406	chr1	238785308	238785309	rs72763355	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	1q43	intergenic	rs72763355-A		5E-6		297.72	[169.58-425.86] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
2407	chr1	238884127	238884128	rs77872903	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1q43	NR	rs77872903-?	NR	3E-6		0.1645	[0.096-0.233] unit increase	Illumina [~ 7800000] (imputed)	N
2407	chr1	238908352	238908353	rs2689154	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	1q43	MIPEPP2	rs2689154-G	0.17	6E-6		1.2	[1.11-1.29]	Affymetrix [666141]	N
2407	chr1	238930340	238930341	rs2841416	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	ZP4	rs2841416-?	NR	6E-6	(LPC 14:0)	0.19855069	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2407	chr1	238930858	238930859	rs10925760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	ZP4	rs10925760-?	NR	4E-6	(TAG 48:1)	0.19578338	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
2407	chr1	238930858	238930859	rs10925760	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	ZP4	rs10925760-?	NR	3E-6	(TAG 46:1)	0.19550307	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
2407	chr1	238931276	238931277	rs2689128	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	1q43	NR	rs2689128-?	NR	4E-6		3.28	[1.98-5.43]	NR [341191]	N
2407	chr1	238931276	238931277	rs2689128	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	1q43	NR	rs2689128-?	NR	2E-6	(EA)	4.82	[2.52-9.25]	NR [341191]	N
2408	chr1	238963466	238963467	rs16837489	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q43	NR	rs16837489-G	0.051	9E-6	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
2408	chr1	238998496	238998497	rs9662316	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q43	NR	rs9662316-T	NR	7E-6	(female)	0.1952	[0.11-0.28] unit decrease	Illumina [11133794] (imputed)	N
2408	chr1	239066497	239066498	rs144892944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs144892944-A	0.015	4E-6		0.047	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239075713	239075714	rs1915279	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	1q43	KRT18P32	rs1915279-?	NR	2E-6	(GG vs. not GG)			Illumina [856627]	N
2409	chr1	239079308	239079309	rs6676535	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs6676535-A	0.015	5E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239083706	239083707	rs6669578	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs6669578-T	0.015	4E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239088888	239088889	rs112425727	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs112425727-A	0.015	4E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239090513	239090514	rs9970786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs9970786-A	0.017	4E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239092297	239092298	rs113177748	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs113177748-A	0.015	4E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
2409	chr1	239093671	239093672	rs9428778	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	1q43	NR	rs9428778-G	0.07	7E-6				Illumina [4877242] (imputed)	N
2409	chr1	239114512	239114513	rs148495475	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q43	intergenic	rs148495475-A	0.0142838072356923	2E-6	(F_Sutterellaceae_HB)	1.62835	[0.96-2.3] unit decrease	Illumina [7711310] (imputed)	N
2409	chr1	239157594	239157595	rs16837642	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	1q43	NR	rs16837642-T	NR	1E-7	(GEE model)	0.88226	[0.56-1.21] unit decrease	NR [NR] (imputed)	N
2409	chr1	239194241	239194242	rs34148991	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	1q43	NR	rs34148991-?	NR	6E-6		0.1899	[0.11-0.27] unit increase	Illumina [at least 560000] (imputed)	N
2409	chr1	239198958	239198959	rs11587347	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q43	NR	rs11587347-?	NR	3E-10		1.1161711	[1.08-1.15]	Affymetrix, Illumina [12447948] (imputed)	N
2409	chr1	239201650	239201651	rs10802742	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	1q43		rs10802742-?	NR	3E-8		0.019	NR unit increase	NR [4428082] (imputed)	N
2410	chr1	239209133	239209134	rs1033023	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q43	NR	rs1033023-A	NR	2E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2410	chr1	239210057	239210058	rs72769124	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1q43	NR	rs72769124-A	0.0964	3E-9		0.11514678	[0.077-0.153] unit increase	NR [NR]	N
2410	chr1	239210057	239210058	rs72769124	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	1q43	NR	rs72769124-A	0.0964	2E-8		0.10861333	[0.071-0.147] unit increase	NR [NR]	N
2410	chr1	239210057	239210058	rs72769124	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1q43	NR	rs72769124-?		3E-8				NR [8377093]	N
2410	chr1	239214482	239214483	rs1509701	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	1q43	NR	rs1509701-?	NR	9E-6		0.0738	[0.041-0.107] unit increase	Illumina [at least 560000] (imputed)	N
2410	chr1	239311067	239311068	rs7419201	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	1q43	NR	rs7419201-?	NR	2E-6	(EA)	4.77	[2.50-9.11]	NR [341191]	N
2410	chr1	239313572	239313573	rs7541537	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	1q43		rs7541537-?	NR	2E-6	(EA)	3.31	[2.02-5.43]	NR [341191]	N
2410	chr1	239315017	239315018	rs12084421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	1q43		rs12084421-T	0.322984145	9E-9		0.8038987	[0.53-1.08] unit increase	Illumina [13429783] (imputed)	N
2411	chr1	239397103	239397104	rs1339738	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q43	NR	rs1339738-C	0.0857549797772829	7E-6	(IGP49)	0.2911	[0.16-0.42] unit increase	Illumina [~ 2500000] (imputed)	N
2411	chr1	239433871	239433872	rs72752681	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	1q43	LOC105373223	rs72752681-A		8E-6		3.1736	[1.78-4.56] unit decrease	Illumina [7576458] (imputed)	N
2411	chr1	239434544	239434545	rs113975060	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	1q43	NR	rs113975060-?	NR	2E-6		0.1371	[0.081-0.193] unit increase	Illumina [~ 7800000] (imputed)	N
2411	chr1	239436541	239436542	rs2820037	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Hypertension	1,952 European ancestry cases, 2,938 European ancestry controls	NA	1q43	CHRM3, ZP4, RYR2	rs2820037-T	0.14	8E-7		1.54	[1.03-2.31]	Affymetrix [469557]	N
2412	chr1	239477190	239477191	rs187984862	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	Intergenic	rs187984862-C	1.0	4E-7	(AA)	2.334	NR unit increase	Illumina [NR] (imputed)	N
2412	chr1	239562759	239562760	rs115455482	31740666	Cheng Z	2019-11-18	Transl Psychiatry	A regulatory variant of CHRM3 is associated with cannabis-induced hallucinations in European Americans.	Hallucinations in long-term cannabis use	91 European ancestry cases, 220 African American cases, 1,826 European ancestry controls, 2,148 African American controls	256 European ancestry cases, 142 African American cases, 2,118 European ancestry controls, 1,114 African American controls	1q43	CHRM3	rs115455482-T	0.058	6E-11		0.11	[NR] unit increase	Illumina [up to 14134502] (imputed)	N
2412	chr1	239562759	239562760	rs115455482	31740666	Cheng Z	2019-11-18	Transl Psychiatry	A regulatory variant of CHRM3 is associated with cannabis-induced hallucinations in European Americans.	Hallucinations in long-term cannabis use	91 European ancestry cases, 220 African American cases, 1,826 European ancestry controls, 2,148 African American controls	256 European ancestry cases, 142 African American cases, 2,118 European ancestry controls, 1,114 African American controls	1q43	CHRM3	rs115455482-T	0.058	1E-10	(EA)	0.11	[NR] unit increase	Illumina [up to 14134502] (imputed)	N
2412	chr1	239571363	239571364	rs2883428	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	1q43	XM_003960025.1	rs2883428-A	0.75	4E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
2412	chr1	239571363	239571364	rs2883428	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	1q43	XM_003960025.1	rs2883428-A	0.75	4E-7				Affymetrix, Illumina [14227402] (imputed)	N
2413	chr1	239601968	239601969	rs6677208	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	1q43	CHRM3	rs6677208-?	NR	3E-6				Illumina [874956]	N
2413	chr1	239607288	239607289	rs185275068	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	CHRM3	rs185275068-A	0.999	1E-6	(AA)	1.622	NR unit increase	Illumina [NR] (imputed)	N
2413	chr1	239635248	239635249	rs11805526	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	1q43	intergenic	rs11805526-T	0.0213	7E-6	(Ordinal)	1.3355	[0.75-1.92] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2413	chr1	239644170	239644171	rs13373941	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	LOC100505872	rs13373941-C	0.0060	8E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2413	chr1	239661818	239661819	rs1796829	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus abundance in stool	5,959 Finnish ancestry individuals	NA	1q43		rs1796829-C	0.0281276	5E-9		0.0936224	[0.062-0.125] unit increase	Illumina [7980478] (imputed)	N
2413	chr1	239693228	239693229	rs188686089	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	CHRM3	rs188686089-A	0.999	1E-6	(AA)	1.758	NR unit increase	Illumina [NR] (imputed)	N
2413	chr1	239698861	239698862	rs10925907	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Reflection (response to stress)	1,758 European ancestry individuals	NA		CHRM3	rs10925907-G	NR	7E-6		0.0948	NR unit decrease	Illumina [3474641] (imputed)	N
2413	chr1	239699828	239699829	rs77830002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	CHRM3	rs77830002-T	0.999	1E-6	(AA)	1.776	NR unit increase	Illumina [NR] (imputed)	N
2413	chr1	239716844	239716845	rs76759221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	CHRM3	rs76759221-C	0.998	7E-7	(AA)	1.438	NR unit increase	Illumina [NR] (imputed)	N
2413	chr1	239721303	239721304	rs12081830	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CHRM3	rs12081830-?	NR	3E-8		1.59943	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2414	chr1	239773794	239773795	rs76016051	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs76016051-T	0.02962	4E-10	(MYO1B)	0.1019	NR unit increase	Illumina [1671387] (imputed)	N
2414	chr1	239797705	239797706	rs12082628	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	1q43	CHRM3	rs12082628-?	NR	3E-8	(conditioned on rs9266634, rs111876221 and rs113887891)	14.99	[5.75-39.04]	Illumina [9380034] (imputed)	N
2414	chr1	239811389	239811390	rs16838623	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Interleukin-6 (red blood cell fatty acid level interaction)	2,703 individuals	NA	1q43	LOC105373225, CHRM3	rs16838623-?	0.022262677	5E-8	(ALA)	0.8960381	[0.58-1.22] unit increase	Affymetrix [2500000] (imputed)	N
2414	chr1	239812102	239812103	rs6691263	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	1q43	CHRM3	rs6691263-G	0.21	3E-6	(female)	5.32	z score increase	Illumina [6380737] (imputed)	N
2414	chr1	239850587	239850588	rs6688537	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	1q43	CHRM3	rs6688537-A	0.5	7E-22		0.038	[0.03-0.046] unit decrease	Affymetrix [27624732] (imputed)	N
2414	chr1	239857523	239857524	rs2355237	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	1q43	CHRM3	rs2355237-A	0.5124	9E-31		0.029	[0.024-0.034] unit increase	Affymetrix [19819130] (imputed)	N
2414	chr1	239857523	239857524	rs2355237	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	1q43	CHRM3	rs2355237-A	0.5124	2E-31		0.0278	[0.023-0.033] unit increase	Affymetrix [19819130] (imputed)	N
2414	chr1	239857523	239857524	rs2355237	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	1q43	CHRM3	rs2355237-A	0.5124	1E-17		0.02	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
2415	chr1	239897704	239897705	rs1155612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q43		rs1155612-?	NR	2E-52				NR [~ 8900000] (imputed)	N
2415	chr1	239901005	239901006	rs11579382	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	1q43	CHRM3	rs11579382-C	0.42	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
2415	chr1	239932840	239932841	rs76250538	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	1q43		rs76250538-?	NR	8E-11				Illumina [1128286]	N
2415	chr1	239949265	239949266	rs61829244	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	1q43	NR	rs61829244-G		7E-6		0.6658	[0.37-0.96] SD units increase	NR [10700000] (imputed)	N
2415	chr1	239970096	239970097	rs12059546	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	1q43	CHRM3	rs12059546-G	.172	4E-8	(JME)	1.42	[1.26-1.61]	Affymetrix [4560000] (imputed)	N
2415	chr1	239988848	239988849	rs7536133	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	1q43	CHRM3	rs7536133-?	NR	9E-6	(Theta power, Cz)	0.077	[0.044-0.11] unit decrease	Illumina [527829]	N
2415	chr1	239991983	239991984	rs619652	34032881	Du M	2021-05-25	Intensive Care Med	Integrative omics provide biological and clinical insights into acute respiratory distress syndrome.	Acute respiratory distress syndrome	1,250 European ancestry cases, 1,583 European ancestry controls, 387 African American cases, 387 African American controls	NA	1q43	CHRM3	rs619652-G	0.598	2E-7	(African American)	1.86	[1.48-2.35]	Illumina [3817416] (imputed)	N
2416	chr1	239998712	239998713	rs12036147	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	1q43	CHRM3	rs12036147-A	0.9116	1E-6	(EA)			Illumina [NR] (imputed)	N
2416	chr1	240064537	240064538	rs10399860	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	1q43	NR	rs10399860-?		9E-6	(EA)			Illumina [~ 5140000] (imputed)	N
2416	chr1	240077308	240077309	rs4659554	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	1q43	CHRM3	rs4659554-A	0.285395	4E-8		5.492	unit increase	NR [10847151] (imputed)	N
2416	chr1	240081746	240081747	rs2184857	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	1q43	CHRM3	rs2184857-?		7E-7		1.2674271	[NR]	Affymetrix [492217] (imputed)	N
2416	chr1	240081746	240081747	rs2184857	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	1q43	CHRM3	rs2184857-?		6E-6		1.2934936	[NR]	Affymetrix [492217] (imputed)	N
2417	chr1	240187632	240187633	rs1891230	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	1q43	RPS7P5, FMN2	rs1891230-?	NR	3E-6		0.60636	[0.35-0.86] unit decrease	Affymetrix [up to 386296] (imputed)	N
2417	chr1	240222689	240222690	rs78037194	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q43	NR	rs78037194-G	NR	3E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
2418	chr1	240283735	240283736	rs11810574	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	1q43	CHRM3	rs11810574-G	0.15	4E-6	(AA-triglyceride response)	23.12	[13.34-32.9] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
2418	chr1	240286715	240286716	rs3738433	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1q43	NR	rs3738433-?	NR	2E-6				Illumina [NR] (imputed)	N
2418	chr1	240288097	240288098	rs149509706	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1q43	NR	rs149509706-?	NR	3E-6				Illumina [NR] (imputed)	N
2418	chr1	240295015	240295016	rs116579696	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1q43	NR	rs116579696-?	NR	3E-6				Illumina [NR] (imputed)	N
2418	chr1	240297029	240297030	rs17669038	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	1q43	NR	rs17669038-?	NR	3E-6				Illumina [NR] (imputed)	N
2418	chr1	240350176	240350177	rs9970852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q43		rs9970852-T	NR	3E-8		0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2418	chr1	240361445	240361446	rs16839632	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	1q43	FMN2	rs16839632-G	0.07	8E-6		0.131	[0.074-0.188] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
2418	chr1	240384322	240384323	rs9661140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	1q43		rs9661140-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2419	chr1	240388475	240388476	rs7520065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q43		rs7520065-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2419	chr1	240402652	240402653	rs7550088	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	1q43	FMN2	rs7550088-?	NR	2E-8		1.046682	NR	Affymetrix [9154080] (imputed)	N
2419	chr1	240424652	240424652	rs34298462	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	1q43	FMN2	rs34298462-?		8E-6				Illumina [7405822] (imputed)	N
2419	chr1	240437870	240437871	rs6694063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q43		rs6694063-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2419	chr1	240445595	240445596	rs17672135	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	1q43	intergenic	rs17672135-T	0.87	2E-6		1.43	[1.23-1.64]	Affymetrix [469557]	N
2419	chr1	240484516	240484517	rs12047316	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	1q43	FMN2	rs12047316-T	0.917129167	4E-6		0.305645	[0.18-0.43] unit decrease	Illumina [6952813] (imputed)	N
2420	chr1	240522373	240522374	rs4659967	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q43		rs4659967-C	0.49	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
2420	chr1	240567316	240567317	rs59643483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q43		rs59643483-A	NR	4E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2420	chr1	240567316	240567317	rs59643483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs59643483-A	0.284985	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
2420	chr1	240567316	240567317	rs59643483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q43	NR	rs59643483-A	0.185737	4E-12		0.016468	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2420	chr1	240569410	240569411	rs12756922	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q43		rs12756922-?	NR	3E-206		0.0865499	[0.081-0.092] unit decrease	Affymetrix [20259828] (imputed)	N
2420	chr1	240574930	240574930	rs545393282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q43	FMN2	rs545393282-GT	0.202413	8E-12		0.01937542	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2420	chr1	240574930	240574930	rs545393282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q43	FMN2	rs545393282-GT	0.202377	3E-9		0.016813751	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2420	chr1	240581652	240581653	rs12044944	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1q43	NR	rs12044944-T	0.1916	8E-14		0.0553	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
2420	chr1	240581652	240581653	rs12044944	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	1q43	NR	rs12044944-T	0.1908	1E-10	(European)	0.0519	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	1q43	NR	rs1414660-?	0.818709492683411	7E-6		0.06200429	[0.035-0.089] SD units decrease	Illumina [11603265] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	1q43	GREM2	rs1414660-?	NR	8E-14				NR [5554549] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	1q43	GREM2	rs1414660-?	NR	1E-94				NR [5554549] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q43	FMN2	rs1414660-C	0.80658	3E-275		0.0825742	[0.078-0.087] unit decrease	NR [13737936] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q43		rs1414660-?	NR	4E-283				NR [~ 8900000] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q43		rs1414660-?	NR	3E-279		0.090395	[0.085-0.096] unit decrease	Affymetrix [20259828] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q43	FMN2	rs1414660-C	0.807882	5E-48	(men)	0.0924266	[0.08-0.105] unit decrease	NR [17166351] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q43	FMN2	rs1414660-C	0.807786	1E-87		0.0829191	[0.075-0.091] unit decrease	NR [17166351] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	1q43	FMN2	rs1414660-C	0.807702	3E-39	(women)	0.0736586	[0.062-0.085] unit decrease	NR [17166351] (imputed)	N
2420	chr1	240586694	240586695	rs1414660	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		1q43	FMN2	rs1414660-C	NR	1E-8		0.12	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
2420	chr1	240586977	240586978	rs114397473	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q43		rs114397473-?	NR	6E-54		0.120207	[0.1-0.14] unit decrease	Affymetrix [20259828] (imputed)	N
2420	chr1	240588767	240588768	rs9659023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q43		rs9659023-G	NR	3E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2420	chr1	240592635	240592636	rs9661787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	1q43		rs9661787-G	NR	2E-8		0.0778	[0.051-0.105] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2420	chr1	240592635	240592636	rs9661787	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	1q43	FMN2	rs9661787-G	0.183508	2E-8		0.11755513	[0.077-0.158] unit decrease	Affymetrix [7288503] (imputed)	N
2420	chr1	240592635	240592636	rs9661787	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	1q43	FMN2, GREM2	rs9661787-C	0.81	1E-11		0.098	[0.069-0.127] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
2420	chr1	240592635	240592636	rs9661787	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	1q43	FMN2, GREM2	rs9661787-C	0.81	1E-7		0.085	[0.054-0.116] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
2420	chr1	240597213	240597214	rs9287237	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q43	FMN2	rs9287237-G	0.82	2E-10		6.38	z-score increase	Affymetrix [4311822] (imputed)	N
2420	chr1	240597213	240597214	rs9287237	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	1q43	FMN2	rs9287237-T	0.15	2E-9	(Trabecular vBMD)	0.19	[0.13-0.25] unit increase	Illumina [2401124] (imputed)	N
2420	chr1	240599905	240599906	rs9727451	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid plaques in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	1q43	FMN2	rs9727451-A	0.087	5E-6		2.13	[1.54-2.95]	Illumina [63089444] (imputed)	N
2420	chr1	240605051	240605052	rs12091371	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		1q43	FMN2	rs12091371-?	0.07	7E-8		0.17	unit decrease	Illumina [NR] (imputed)	N
2420	chr1	240625430	240625431	rs16840114	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	1q43	FMN2	rs16840114-C	0.06	9E-6	(Temperament)	0.25	[NR] unit increase	Affymetrix [677643]	N
2421	chr1	240656549	240656550	rs142343894	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	1q43		rs142343894-?	NR	6E-10		0.0959966	[0.063-0.129] unit decrease	NR [9800000] (imputed)	N
2421	chr1	240656549	240656550	rs142343894	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	1q43		rs142343894-?	NR	1E-10		0.105771	[0.073-0.138] unit decrease	NR [9800000] (imputed)	N
2421	chr1	240656549	240656550	rs142343894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q43	GREM2	rs142343894-C	0.00364299999999995	4E-9		0.107537694	[0.072-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
2421	chr1	240656549	240656550	rs142343894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q43	NR	rs142343894-G	0.996435	1E-10		0.10551	[0.073-0.138] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2421	chr1	240656549	240656550	rs142343894	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	1q43	MIR1273E	rs142343894-G	0.99638	8E-19		0.133808	[0.1-0.16] unit increase	NR [13737936] (imputed)	N
2421	chr1	240656549	240656550	rs142343894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	1q43		rs142343894-?	NR	1E-14		0.127399	[0.094-0.161] unit increase	Affymetrix [20259828] (imputed)	N
2421	chr1	240683107	240683108	rs80183786	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	1q43	NR	rs80183786-T	0.9869	8E-7		4.5135	[2.73-6.3] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2421	chr1	240683107	240683108	rs80183786	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	1q43	NR	rs80183786-T	0.9869	8E-7		4.5135	[2.73-6.3] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2421	chr1	240706106	240706107	rs10495471	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	1q43	Intergenic	rs10495471-?		4E-6		2.684005	[NR] unit decrease	Illumina [575353]	N
2421	chr1	240706106	240706107	rs10495471	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	1q43	GREM2	rs10495471-?		2E-7	(AA)			Illumina [NR]	N
2421	chr1	240721551	240721552	rs1934341	30924126	Brackman DJ	2019-03-28	Clin Pharmacol Ther	Genome-wide Association and Functional Studies Reveal Novel Pharmacological Mechanisms for Allopurinol.	Response to allopurinol in gout (change in serum uric acid levels)	2,647 European ancestry cases, 303 East Asian cases, 115 African American cases, 114 Latino cases	355 European ancestry cases	1q43	GREM2	rs1934341-T	NR	3E-6		0.162	[0.093-0.231] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
2421	chr1	240753523	240753524	rs74487757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	1q43		rs74487757-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2421	chr1	240778056	240778057	rs2153288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	1q43		rs2153288-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2422	chr1	240809550	240809551	rs186110361	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	1q43		rs186110361-?	NR	2E-8		2.1337	[1.39-2.88] unit decrease	Affymetrix [NR] (imputed)	N
2422	chr1	240846123	240846124	rs4659996	22199011	Murabito JM	2011-12-23	Circ Cardiovasc Genet	Association between chromosome 9p21 variants and the ankle-brachial index identified by a meta-analysis of 21 genome-wide association studies.	Ankle-brachial index	38,376 European ancestry individuals, 2,133 Erasmus Rucphen individuals, 1,183 Old Order Amish individuals	16,717 European ancestry individuals	1q43	GREM2	rs4659996-A	0.48	7E-6		0.004	[0.0022-0.0058] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2422	chr1	240851290	240851291	rs79969755	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q43	Intergenic	rs79969755-A	0.968	3E-6	(AA)	0.4	NR unit increase	Illumina [NR] (imputed)	N
2422	chr1	240904627	240904628	rs4611001	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	1q43	RGS7	rs4611001-A	0.97	2E-6		1.79	1.41-2.27	Affymetrix, Illumina [2500000] (imputed)	N
2423	chr1	240934233	240934234	rs35764260	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q43		rs35764260-G	NR	1E-6		4.89435	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2423	chr1	240934233	240934234	rs35764260	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q43		rs35764260-G	NR	5E-6		4.580529	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2423	chr1	240934233	240934234	rs35764260	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	1q43		rs35764260-G	NR	3E-6		4.647331	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2423	chr1	240957392	240957393	rs1832905	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	1q43		rs1832905-G	NR	2E-6		1.38		Illumina [7574753] (imputed)	N
2423	chr1	240957932	240957933	rs116135446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q43		rs116135446-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2423	chr1	240987753	240987754	rs7544372	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	RGS7	rs7544372-G	0.211	9E-6	(Vitamin B12 )	0.03	[NR] pmol/L increase	Illumina [899892]	N
2423	chr1	241005782	241005783	rs116229052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q43	RGS7	rs116229052-T	0.991	5E-6	(AA)	0.497	NR unit increase	Illumina [NR] (imputed)	N
2424	chr1	241096387	241096388	rs192393731	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	1q43	NR	rs192393731-C	0.02682	4E-6		0.4316	[0.25-0.61] unit increase	Illumina [10677593] (imputed)	N
2424	chr1	241137032	241137033	rs6429233	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	1q43	RGS7	rs6429233-A	0.4574	1E-8		1.0204054		Affymetrix [11880941] (imputed)	N
2425	chr1	241188281	241188282	rs679992	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	1q43	intergenic	rs679992-T	0.5	1E-6	(AA)	1.09	[1.05-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
2426	chr1	241306247	241306248	rs146390073	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls	NA	1q43	RGS7	rs146390073-?	NR	2E-8				NR [~ 8000000] (imputed)	N
2426	chr1	241361792	241361793	rs1915872	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	1q43	RGS7	rs1915872-?	NR	1E-6				Affymetrix [394222]	N
2427	chr1	241484704	241484705	rs116812750	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	1q43	RGS7	rs116812750-?	NR	3E-7				Illumina [2668805]	N
2427	chr1	241501984	241501985	rs59382229	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	1q43		rs59382229-G	NR	8E-7		3.3932812	NR	Affymetrix [7846216] (imputed)	N
2427	chr1	241550407	241550408	rs10926475	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	FH	rs10926475-?	NR	2E-6	(CE 14:0)	1.703993	[1-2.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
2428	chr1	241582947	241582948	rs80107998	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	1q43	NR	rs80107998-T	0.03853	4E-6		0.356	[0.2-0.51] unit increase	Illumina [10677593] (imputed)	N
2428	chr1	241628429	241628430	rs4660091	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	1q43	RGS7, FH	rs4660091-T	0.662341	3E-6		0.0285	[0.017-0.04] unit decrease	Illumina [1220000] (imputed)	N
2428	chr1	241633730	241633731	rs2994979	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	KMO	rs2994979-?	NR	2E-6	(creatinine)	0.1585385	[0.093-0.224] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2429	chr1	241703556	241703557	rs55863022	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q43	KMO, FH, OPN3, CHML	rs55863022-T	NR	4E-6	(daytime resting duration, weekdays)	0.1136	[0.065-0.162] unit decrease	Affymetrix [7141204] (imputed)	N
2429	chr1	241713401	241713402	rs61825638	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q43	KMO	rs61825638-T	0.188051	2E-36	(kynurenate)	0.35	[0.3-0.4] unit increase	Illumina [13039987] (imputed)	N
2429	chr1	241713401	241713402	rs61825638	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	1q43	KMO	rs61825638-T	0.23	7E-18	(kynurenate)	0.17	[0.13-0.21] unit increase	Illumina [7750367] (imputed)	N
2429	chr1	241755566	241755567	rs1053221	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	KMO	rs1053221-G	0.111	1E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
2429	chr1	241773026	241773027	rs3765814	33574088	Mocci E	2021-02-11	Cancer Res	Smoking modifies pancreatic cancer risk loci on 2q21.3.	Pancreatic ductal adenocarcinoma x smoking interaction	7,937  European ancestry cases, 11,774 European ancestry controls	NA	1q43	OPN3	rs3765814-T	NR	2E-6				Illumina [6769447] (imputed)	N
2429	chr1	241774285	241774286	rs16841877	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	1q43	NR	rs16841877-?		6E-6		0.33	unit decrease	Illumina [1211988] (imputed)	N
2429	chr1	241774285	241774286	rs16841877	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	1q43	NR	rs16841877-?		6E-6		0.34	unit decrease	Illumina [1211988] (imputed)	N
2429	chr1	241794223	241794224	rs138332350	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	1q43	NR	rs138332350-?	NR	2E-8			[NR]	NR [1665663]	N
2429	chr1	241818493	241818494	rs12063498	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q43	WDR64	rs12063498-G	0.035579289563006	9E-6	(G_Sporobacter_HB)	0.977987	[0.55-1.41] unit decrease	Illumina [7711310] (imputed)	N
2430	chr1	241829585	241829586	rs12564480	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	1q43	WDR64	rs12564480-?	0.88	9E-7		2.4390244	[1.72-3.57]	Affymetrix, Illumina [7000000] (imputed)	N
2430	chr1	241829585	241829586	rs12564480	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	1q43	WDR64	rs12564480-C	0.12	4E-7		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
2430	chr1	241849658	241849659	rs9428513	32222710	Hosgood Iii HD	2020-03-27	Respiration	PRDM15 Is Associated with Risk of Chronic Obstructive Pulmonary Disease in a Rural Population in Chile.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	1q43	WDR64	rs9428513-?	NR	6E-6				Illumina [455564] (imputed)	N
2430	chr1	241861010	241861011	rs7412804	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		WDR64	rs7412804-?	NR	2E-9		0.656672	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2430	chr1	241876564	241876565	rs114593137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q43		rs114593137-A	0.793	2E-12		0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2430	chr1	241878546	241878547	rs12569163	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	1q43	WDR64	rs12569163-?	0.12	2E-6				Affymetrix, Illumina [1348798]	N
2430	chr1	241879203	241879204	rs78428793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q43	Intergenic	rs78428793-A	0.2155	5E-14	(MTAG)	0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2430	chr1	241879203	241879204	rs78428793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q43	Intergenic	rs78428793-A	0.2098	1E-14	(MTAG)	0.0124	[0.0093-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2430	chr1	241885442	241885443	rs72768092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q43	Intergenic	rs72768092-T	0.2117	3E-9	(MTAG)	0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2430	chr1	241892234	241892235	rs9782914	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	1q43	NR	rs9782914-G	0.145	8E-6	(Illicit drug use)			Illumina [527829]	N
2430	chr1	241894085	241894086	rs10926554	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	1q43	WDR64	rs10926554-A	0.126	3E-6		13.13	[NR] unit decrease	Illumina [527829]	N
2430	chr1	241894846	241894847	rs76666061	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q43	NR	rs76666061-A	0.0122	4E-11	(LIPA)	0.03675	NR unit increase	Illumina [1671387] (imputed)	N
2431	chr1	242009198	242009199	rs34273295	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q43	EXO1	rs34273295-T	0.0534823549307801	7E-6	(G_Collinsella_HB)	0.702677	[0.4-1.01] unit decrease	Illumina [7711310] (imputed)	N
2431	chr1	242017825	242017826	rs2236918	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	1q43	EXO1	rs2236918-C	0.45	8E-14		0.15	[0.11-0.19] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q43		rs4149909-G	NR	6E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	1q43		rs4149909-A	0.9667	2E-8		0.3230277	[0.2-0.44] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	1q43	EXO1	rs4149909-G	0.03272	5E-12		0.042866442	[0.031-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	1q43	EXO1	rs4149909-G	0.032717	1E-10		0.03992328	[0.028-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	1q43	EXO1	rs4149909-G	0.032523	2E-9		1.16	[1.10-1.21]	Affymetrix [7600000] (imputed)	N
2431	chr1	242023897	242023898	rs4149909	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	1q43	EXO1	rs4149909-G	0.025624	1E-8		1.1494253	[1.09-1.22]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2431	chr1	242028803	242028804	rs1635506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1q43		rs1635506-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q43		rs72755295-G	NR	9E-11		0.0429	[0.03-0.056] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q43		rs72755295-G	NR	1E-10		0.0426	[0.03-0.056] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q43	EXO1	rs72755295-G	0.033181	2E-10		0.0386998	[0.027-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q43	EXO1	rs72755295-G	0.033169	3E-10		0.038952142	[0.027-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs72755295-G	0.0320918	3E-11				Affymetrix, Illumina [24246363] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q43	NR	rs72755295-G	0.033031	1E-13		0.037823	[0.028-0.048] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs72755295-G	0.032418	3E-12				Affymetrix, Illumina [20825802] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q43	NR	rs72755295-G	0.033218	3E-14		0.040996	[0.03-0.052] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q43		rs72755295-?	NR	5E-13				NR [~ 8900000] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	1q43		rs72755295-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	1q43	EXO1	rs72755295-G	0.03	2E-14	(EA)	1.15	[1.09-1.2] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	1q43	EXO1	rs72755295-G	0.03	3E-7		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 14000000] (imputed)	N
2431	chr1	242034262	242034263	rs72755295	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	1q43	EXO1	rs72755295-G	0.03	2E-8		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 11600000] (imputed)	N
2431	chr1	242040774	242040775	rs1635501	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	1q43	EXO1	rs1635501-C	0.478	8E-10		0.164	[0.11-0.22] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
2431	chr1	242043844	242043845	rs1635499	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	WDR64	rs1635499-?	NR	4E-6	(LPC 20:5)	0.44850448	[0.26-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
2431	chr1	242084428	242084429	rs112852859	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	1q43	intergenic	rs112852859-T	0.133613	7E-6		0.26713	[0.15-0.38] unit decrease	NR [7263501] (imputed)	N
2432	chr1	242163495	242163496	rs757999890	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	1q43	MAP1LC3C	rs757999890-A	0.9988	4E-6		1.2547	[0.72-1.79] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2433	chr1	242274907	242274908	rs10803016	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	1q43	PLD5	rs10803016-T	0.52	7E-6	(AA)	0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
2433	chr1	242310015	242310016	rs12736345	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	MAP1LC3C	rs12736345-?	NR	8E-6	(TAG 50:5)	0.82409424	[0.46-1.19] unit increase	Affymetrix [at least 2500000] (imputed)	N
2433	chr1	242310015	242310016	rs12736345	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	MAP1LC3C	rs12736345-?	NR	5E-6	(TAG 48:4)	0.84702164	[0.48-1.21] unit increase	Affymetrix [at least 2500000] (imputed)	N
2434	chr1	242366281	242366282	rs2653165	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	1q43	PLD5	rs2653165-?		9E-6				Affymetrix, Illumina [1348798]	N
2434	chr1	242405565	242405566	rs429360	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1q43	PLD5	rs429360-T	0.945	7E-21		0.48	[0.38-0.58] unit increase	Affymetrix [339439]	N
2434	chr1	242431556	242431557	rs12405776	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	1q43	PLD5	rs12405776-T	0.2195	1E-14		7.746	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
2434	chr1	242431556	242431557	rs12405776	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	1q43	NR	rs12405776-T	0.0709	4E-24		0.2263	[0.18-0.27] unit increase	Illumina [~ 10600000] (imputed)	N
2435	chr1	242522041	242522042	rs2919024	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q43	NR	rs2919024-G	0.012337327027027	7E-6	(IGP20)	0.6788	[0.38-0.97] unit decrease	Illumina [~ 2500000] (imputed)	N
2435	chr1	242531653	242531654	rs1439523	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	1q43	NR	rs1439523-C	0.983777045475011	4E-6	(IGP16)	0.6089	[0.35-0.87] unit increase	Illumina [~ 2500000] (imputed)	N
2435	chr1	242539237	242539238	rs140089899	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	1q43	PLD5	rs140089899-T	0.0140721766532744	1E-6	(G_Sutterella_RNT)	0.738713	[0.44-1.04] unit increase	Illumina [7711310] (imputed)	N
2435	chr1	242543624	242543625	rs57647669	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	1q43	NR	rs57647669-T	0.128671	3E-6		1.133	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
2435	chr1	242554845	242554846	rs11811774	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q43	NR	rs11811774-T	0.315	8E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
2435	chr1	242566390	242566391	rs12024076	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella sp002933775 abundance in stool	5,959 Finnish ancestry individuals	NA	1q43		rs12024076-C	0.0482272	2E-8		0.149259	[0.097-0.201] unit increase	Illumina [7980478] (imputed)	N
2435	chr1	242606227	242606228	rs11810103	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	1q43	PLD5	rs11810103-A	0.002	2E-6		20.85	[5.92-73.51]	Illumina [7959153] (imputed)	N
2436	chr1	242648881	242648882	rs61839835	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1q43	NR	rs61839835-C	0.1746	7E-6		0.191	[0.11-0.27] unit increase	Illumina [NR] (imputed)	N
2436	chr1	242710042	242710043	rs1553441	26207136	Cho CH	2015-07-06	Psychiatry Investig	CDH13 and HCRTR2 May Be Associated with Hypersomnia Symptom of Bipolar Depression: A Genome-Wide Functional Enrichment Pathway Analysis.	Hypersomnia during a major depressive episode in bipolar disorder	263 European ancestry cases with hypersomnia, 112 European ancestry cases without hypersomnia	NA	1q43	PLD5	rs1553441-?		6E-6	(adaptative permutation)	2.44	[NR] (Non-permuted)	Affymetrix [703012]	N
2436	chr1	242730330	242730331	rs10803055	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q43	NR	rs10803055-C	0.536	2E-8		0.00609733	[0.004-0.0082] unit decrease	NR [9732723] (imputed)	N
2437	chr1	242808340	242808341	rs10737883	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		1q43	NR	rs10737883-C	NR	3E-6	(conditioned on rs1426654)	1.00959	[0.59-1.43] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
2437	chr1	242836467	242836468	rs4658845	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Magnetospirillum A abundance in stool	5,959 Finnish ancestry individuals	NA	1q43		rs4658845-C	0.370205	4E-8		0.0257255	[0.017-0.035] unit decrease	Illumina [7980478] (imputed)	N
2437	chr1	242874884	242874885	rs6676375	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	1q43	PLD5	rs6676375-T	0.87	8E-7		3.0303	[NR]	Affymetrix [up to 4467279] (imputed)	N
2438	chr1	242955562	242955563	rs12751297	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q43	PLD5, RSL24D1P4	rs12751297-A	0.262	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2438	chr1	242961657	242961658	rs182996728	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Smoking behaviour (cigarettes smoked per day)	7,171 African American individuals, 4,198 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 2,176 Native Hawaiian ancestry individuals, 288 Native American ancestry individuals, 111 individuals	NA	1q43	CEP170, PLD5	rs182996728-?	NR	3E-8		0.113	[0.074-0.152] unit decrease	Illumina [27957689] (imputed)	N
2438	chr1	242961657	242961658	rs182996728	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Smoking behaviour (cigarettes smoked per day)	7,171 African American individuals, 4,198 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 2,176 Native Hawaiian ancestry individuals, 288 Native American ancestry individuals, 111 individuals	NA	1q43	CEP170, PLD5	rs182996728-?	NR	2E-6	(Native Hawaiian)	0.1004309	[0.059-0.142] unit decrease	Illumina [27957689] (imputed)	N
2438	chr1	242965371	242965372	rs4382707	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	1q43	Intergenic	rs4382707-?	NR	5E-7		1.31	[1.15-1.48]	Illumina [at least 5000000] (imputed)	N
2438	chr1	242972899	242972900	rs6676895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	1q43		rs6676895-A	NR	1E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2439	chr1	243102899	243102900	rs12405634	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Body mass index	14,126 African ancestry individuals	NA	1q43		rs12405634-C	0.929	3E-10		0.252062	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
2439	chr1	243127317	243127318	rs4486435	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	SDCCAG8	rs4486435-?	NR	3E-7	(cotinine)	0.35169557	[0.22-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
2439	chr1	243129402	243129403	rs61841072	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	1q43	NR	rs61841072-G	NR	7E-6		1.3157895	[NR]	Illumina [up to 9792010] (imputed)	N
2440	chr1	243193271	243193272	rs144503462	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1q43	PLD5, LINC01347	rs144503462-T	0.989928388	8E-8		1.6769611	[1.39-2.03]	Illumina [10439017] (imputed)	N
2440	chr1	243241613	243241614	rs12071912	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1q43	RP11-261C10.3	rs12071912-C	0.3163	5E-9		0.0153	[0.01-0.02] unit decrease	NR [NR]	N
2440	chr1	243255123	243255124	rs9700909	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	1q43	RP11-261C10.3	rs9700909-?	NR	4E-9			[NR]	NR [NR] (imputed)	N
2440	chr1	243255820	243255821	rs144008029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q43	NR	rs144008029-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2441	chr1	243290641	243290642	rs55716084	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	1q43	CEP170	rs55716084-A	0.13	3E-6	(Dominant model)	1.59	[NR]	Illumina [1795103]	N
2441	chr1	243346403	243346404	rs2789111	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	1q43	CEP170	rs2789111-C	0.38	1E-10		0.0071363	[0.005-0.0093] unit decrease	NR [16367095] (imputed)	N
2441	chr1	243362679	243362680	rs10436951	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	1q43	CEP170	rs10436951-A	0.988472307	9E-8		1.6081543	[1.35-1.91]	Illumina [10439017] (imputed)	N
2441	chr1	243383634	243383635	rs2171974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q43		rs2171974-?	NR	7E-15				NR [~ 8900000] (imputed)	N
2441	chr1	243383635	243383636	rs2171973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs2171973-A	0.621798	2E-15				Affymetrix, Illumina [22063850] (imputed)	N
2441	chr1	243383635	243383636	rs2171973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q43	NR	rs2171973-A	0.628529	4E-15		0.01526	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2441	chr1	243386035	243386036	rs12080886	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1q43	CEP170	rs12080886-T	0.65	9E-15	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2441	chr1	243387787	243387788	rs1565440	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	1q43	NR	rs1565440-G	0.63	7E-13		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
2441	chr1	243388369	243388370	rs10926973	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q43	CEP170	rs10926973-T	NR	2E-8		0.0224657	[0.014-0.031] unit increase	Affymetrix [16832071] (imputed)	N
2442	chr1	243412935	243412936	rs4658552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	1q43		rs4658552-C	NR	2E-13		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2442	chr1	243412935	243412936	rs4658552	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	1q43	SDCCAG8, AKT3	rs4658552-T	0.632	2E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2442	chr1	243418181	243418182	rs71537331	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	1q43		rs71537331-T	0.3713	3E-10		50.439938	z score increase	NR [6814003]	N
2442	chr1	243418181	243418182	rs71537331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q43	CEP170	rs71537331-T	0.350036	1E-12		0.016472332	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q43		rs3897821-A	0.6654	4E-25		0.0154	[0.012-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q43	Intergenic	rs3897821-A	0.6654	7E-28	(MTAG)	0.0152	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1q43	CEP170, SDCCAG8, AKT3	rs3897821-?	NR	4E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	1q43	CEP170, SDCCAG8, AKT3	rs3897821-?	NR	3E-20				Affymetrix, Illumina [18800000] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1q43	CEP170, SDCCAG8, AKT3	rs3897821-?	NR	4E-17	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
2442	chr1	243420387	243420388	rs3897821	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	1q43	CEP170, SDCCAG8, AKT3	rs3897821-?	NR	2E-20				Affymetrix, Illumina [18800000] (imputed)	N
2442	chr1	243421403	243421404	rs10803130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	1q43	Intergenic	rs10803130-A	0.4618	4E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2442	chr1	243425688	243425689	rs7535162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q43	Intergenic	rs7535162-T	0.6779	1E-10	(MTAG)	0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2442	chr1	243425688	243425689	rs7535162	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	1q43	SDCCAG8	rs7535162-T	0.67	6E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
2442	chr1	243426813	243426816	rs34967691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	1q43		rs34967691-A	NR	4E-24		0.0226	[0.018-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2442	chr1	243428151	243428152	rs12741781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q43	SDCCAG8	rs12741781-G	0.32597	2E-13		0.017747713	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2442	chr1	243428151	243428152	rs12741781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q43	Intergenic	rs12741781-T	0.6667	5E-21	(MTAG)	0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2442	chr1	243430544	243430544	rs534019417	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	1q43	SDCCAG8	rs534019417-TA	NR	5E-9		0.0074149	[0.0049-0.0099] unit decrease	NR [16367095] (imputed)	N
2442	chr1	243430817	243430818	rs28599724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q43	Intergenic	rs28599724-C	0.4585	2E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2442	chr1	243446717	243446718	rs12067370	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12067370-T	0.669252	4E-10		0.058136	[0.039-0.077] increase	Affymetrix [11014269] (imputed)	N
2442	chr1	243449880	243449881	rs3818802	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q43	NR	rs3818802-A	NR	2E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2442	chr1	243452863	243452864	rs10926982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	1q43		rs10926982-G	0.45926	2E-8		0.0199931	[0.013-0.027] unit increase	NR [11722792] (imputed)	N
2442	chr1	243454679	243454680	rs11807162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q43	NR	rs11807162-G	0.877856	8E-12				Affymetrix, Illumina [17210439] (imputed)	N
2442	chr1	243454679	243454680	rs11807162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q43	NR	rs11807162-G	0.884564	1E-11		0.02036	[0.014-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2442	chr1	243458501	243458502	rs3943093	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	1q43	NR	rs3943093-C	0.34493	1E-8		0.041854326	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2442	chr1	243458501	243458502	rs3943093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	1q43		rs3943093-?	NR	6E-15				NR [~ 8900000] (imputed)	N
2442	chr1	243458921	243458922	rs2490395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q43	Intergenic	rs2490395-A	0.4787	1E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2442	chr1	243460554	243460555	rs76473275	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	1q43	NR	rs76473275-T	0.85	3E-12		0.88	[0.63-1.13] unit decrease	Affymetrix [39302896] (imputed)	N
2442	chr1	243461350	243461351	rs34885610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q43	SDCCAG8	rs34885610-C	0.342478	2E-9		0.014289013	[0.0096-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2442	chr1	243462416	243462417	rs2484640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q43		rs2484640-T	NR	2E-21		0.016	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2442	chr1	243467374	243467375	rs147707292	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q43	SDCCAG8	rs147707292-C	0.6973	3E-9		0.1605	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
2442	chr1	243469668	243469669	rs2490391	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	1q43	SDCCAG8	rs2490391-A	0.4324	9E-23		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2442	chr1	243469668	243469669	rs2490391	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	1q43	SDCCAG8	rs2490391-A	0.4644	1E-20		0.0025	[0.0019-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2442	chr1	243469668	243469669	rs2490391	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	1q43	SDCCAG8	rs2490391-A	0.41	4E-17		1.0698	[1.0531-1.0867]	Affymetrix, Illumina [9585923] (imputed)	N
2442	chr1	243471191	243471192	rs953492	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q43	SDCCAG8	rs953492-A	0.4789	1E-12	(EA)	0.0025	[0.0019-0.0031] unit decrease	Affymetrix [NR] (imputed)	N
2442	chr1	243471191	243471192	rs953492	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	1q43	SDCCAG8	rs953492-A	0.444	3E-13		0.0024	[0.0018-0.003] unit decrease	Affymetrix [NR] (imputed)	N
2442	chr1	243471191	243471192	rs953492	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	1q43	SDCCAG8	rs953492-A	0.46	7E-16		0.22	[0.16-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
2442	chr1	243472800	243472801	rs6429422	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	1q43	SDCCAG8	rs6429422-?	NR	4E-9		5.88	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
2442	chr1	243472800	243472801	rs6429422	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q43	SDCCAG8	rs6429422-T		5E-13	(EA)	0.3	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2442	chr1	243472800	243472801	rs6429422	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	1q43	SDCCAG8	rs6429422-T		1E-12		0.271	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2442	chr1	243472800	243472801	rs6429422	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	1q43	SDCCAG8	rs6429422-T		2E-23		0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2442	chr1	243480090	243480091	rs6672843	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	1q43	SDCCAG8	rs6672843-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
2442	chr1	243483753	243483754	rs12145833	20421936	Scherag A	2010-04-22	PLoS Genet	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	1q43	SDCCAG8	rs12145833-T	NR	5E-7		1.19	[1.05-1.37]	Affymetrix, Illumina [1596878] (imputed)	N
2442	chr1	243487860	243487861	rs12058508	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	1q43		rs12058508-?	NR	3E-8		0.0191	NR unit decrease	NR [4428082] (imputed)	N
2442	chr1	243488185	243488186	rs10158537	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	1q43	SDCCAG8	rs10158537-G	0.243	1E-8		0.361	[0.16-0.57] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2442	chr1	243492566	243492567	rs10926991	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	1q43	SDCCAG8	rs10926991-G	0.6023	5E-15		0.2022	[0.15-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
2442	chr1	243498532	243498533	rs2802722	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	CEP170	rs2802722-?	NR	6E-6	(aconitate)	0.16799901	[0.095-0.241] unit increase	Affymetrix [at least 2500000] (imputed)	N
2442	chr1	243501762	243501763	rs2802729	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	1q43	CEP170, SDCCAG8, FCF1P7	rs2802729-C	0.6445	2E-11		6.726	NR z score increase	Illumina [26237160] (imputed)	N
2442	chr1	243501762	243501763	rs2802729	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	1q43	SDCCAG8	rs2802729-A	0.44	2E-8	(EA)	0.0046	[0.003-0.0062] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2442	chr1	243501762	243501763	rs2802729	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	CEP170	rs2802729-?	NR	5E-6	(isocitrate)	0.17857517	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
2442	chr1	243503763	243503764	rs2992632	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	1q43	NR	rs2992632-A	0.7151	3E-11		0.016366277	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2442	chr1	243504107	243504108	rs2256126	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	1q43	SDCCAG8	rs2256126-?	NR	4E-16		0.01773371	[0.013-0.022] unit increase	NR [7306098]	N
2442	chr1	243518150	243518151	rs2802728	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	1q43	SDCCAG8	rs2802728-T	0.9	6E-6		0.026	[0.014-0.038] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
2443	chr1	243533272	243533273	rs12042959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	1q43		rs12042959-G	NR	3E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2443	chr1	243533272	243533273	rs12042959	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q43	NR	rs12042959-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
2443	chr1	243533272	243533273	rs12042959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q43		rs12042959-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2443	chr1	243533272	243533273	rs12042959	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	1q43	NA	rs12042959-A	0.8633	9E-10		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
2443	chr1	243533272	243533273	rs12042959	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	1q43	NA	rs12042959-A	0.8637	3E-10		0.0153	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
2443	chr1	243537728	243537729	rs58560561	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	1q43	SDCCAG8	rs58560561-G	0.65	7E-11		1.028	[1.019-1.036]	Affymetrix [7736308] (imputed)	N
2443	chr1	243537728	243537729	rs58560561	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	1q43	NR	rs58560561-T	0.36	4E-7		0.027	[0.017-0.037] unit decrease	Affymetrix [NR] (imputed)	N
2443	chr1	243544826	243544827	rs1538774	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	1q43	SDCCAG8	rs1538774-G	0.74	3E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
2443	chr1	243547344	243547345	rs12023775	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q43	SDCCAG8	rs12023775-T	0.647	5E-21		0.0116	[0.0092-0.014] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2443	chr1	243547344	243547345	rs12023775	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q43	AKT3	rs12023775-T	0.6443	9E-14		0.015124699	[0.011-0.019] unit increase	Illumina [9339358] (imputed)	N
2443	chr1	243555104	243555105	rs77149735	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q43	NR	rs77149735-A	NR	6E-9		1.32	[NR]	Illumina [7158791] (imputed)	N
2443	chr1	243555104	243555105	rs77149735	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	1q43	AKT3, SDCCAG8	rs77149735-A	0.0191	4E-9		1.317	[1.202-1.444]	Affymetrix, Illumina [9005918] (imputed)	N
2443	chr1	243555218	243555219	rs10803138	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs10803138-?	NR	1E-8				NR [2625067]	N
2443	chr1	243555218	243555219	rs10803138	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs10803138-A	0.2674	3E-8		0.0701746	[0.045-0.095] unit decrease	NR [NR]	N
2443	chr1	243555218	243555219	rs10803138	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs10803138-?	NR	2E-8				Illumina [up to 5582932] (imputed)	N
2443	chr1	243555218	243555219	rs10803138	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		SDCCAG8	rs10803138-G	NR	3E-8		1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
2443	chr1	243555218	243555219	rs10803138	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		SDCCAG8	rs10803138-G	NR	1E-8	(EA)	1.075	[1.05-1.1]	Illumina [6627481] (imputed)	N
2443	chr1	243555218	243555219	rs10803138	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		intergenic	rs10803138-G	NR	8E-8		1.0672358	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2443	chr1	243557658	243557659	rs10927006	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q43	SDCCAG8	rs10927006-T	0.856201	8E-10		0.0119925	[0.0082-0.0158] unit increase	Affymetrix [12370749]	N
2443	chr1	243608966	243608967	rs6703335	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q43	NR	rs6703335-?	NR	1E-8		1.0526427	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
2443	chr1	243608966	243608967	rs6703335	24166486	Sleiman P	2013-10-29	Sci Rep	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, Asian, other and unknown ancestry controls	2652 individuals	1q43	SDCCAG8	rs6703335-?	0.562	4E-9				Affymetrix, Illumina [NR] (imputed)	N
2443	chr1	243608966	243608967	rs6703335	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	1q43	NR	rs6703335-?	NR	5E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [1252901] (imputed)	N
2443	chr1	243612999	243613000	rs2997488	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q43	SDCCAG8	rs2997488-?	NR	3E-6	(gentisic acid)	0.40723434	[0.24-0.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2443	chr1	243614704	243614705	rs12127073	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	1q43	SDCCAG8	rs12127073-C	NR	1E-12		0.0141157	[0.01-0.018] unit decrease	Affymetrix [10061374] (imputed)	N
2443	chr1	243614704	243614705	rs12127073	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	1q43	NR	rs12127073-?	0.1055	5E-6		0.167379	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
2443	chr1	243614704	243614705	rs12127073	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	1q43	NR	rs12127073-?	0.1055	1E-6		0.084412	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
2443	chr1	243640880	243640881	rs12748751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q43	Intergenic	rs12748751-A	0.3924	7E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2443	chr1	243641970	243641971	rs3006917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q43		rs3006917-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2443	chr1	243647207	243647208	rs2994330	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q43	SDCCAG8	rs2994330-T	0.197	7E-12		0.0163	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
2443	chr1	243648067	243648068	rs72759890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q43		rs72759890-?	NR	9E-18				NR [~ 8900000] (imputed)	N
2443	chr1	243651025	243651026	rs2994326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q43		rs2994326-T	0.1852	3E-8		0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2443	chr1	243651025	243651026	rs2994326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q43	Intergenic	rs2994326-T	0.1852	5E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2443	chr1	243651025	243651026	rs2994326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q43	Intergenic	rs2994326-T	0.1866	4E-8	(MTAG)	0.0162	[0.01-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2443	chr1	243654277	243654278	rs884328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q43		rs884328-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2443	chr1	243655896	243655897	rs12093576	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	1q43	NR	rs12093576-T	0.5656	8E-9		0.06466903	[0.043-0.087] unit increase	NR [NR]	N
2443	chr1	243655896	243655897	rs12093576	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q43	Intergenic	rs12093576-C	0.4212	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2443	chr1	243662026	243662027	rs9428576	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	1q43	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs9428576-?		3E-9				NR [7428630] (imputed)	N
2443	chr1	243662026	243662027	rs9428576	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	1q43	DMRTA2, FAF1, CDKN2C	rs9428576-?		9E-9				NR [7428630] (imputed)	N
2444	chr1	243663604	243663608	rs145504297	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	1q44	NR	rs145504297-?		1E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
2444	chr1	243663892	243663893	rs14403	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q44	AKT3	rs14403-C	NR	4E-7	(EA)	1.069	[1.04-1.1]	Illumina [6627481] (imputed)	N
2444	chr1	243663892	243663893	rs14403	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	1q44	MIR4677, SDCCAG8, AKT3	rs14403-?	NR	2E-10		1.077	[1.05-1.1]	Illumina [8000000] (imputed)	N
2444	chr1	243663892	243663893	rs14403	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	1q44	AKT3, CEP170	rs14403-C	0.773	2E-8		1.1	[1.07-1.13]	Affymetrix, Illumina [9871789]	N
2444	chr1	243664641	243664642	rs1058305	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q44	SDCCAG8, AKT3	rs1058305-?		2E-13				NR [7428630] (imputed)	N
2444	chr1	243666694	243666696	rs34770086	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	1q44	AKT3	rs34770086-G	0.2675	6E-8		0.0417	[0.027-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2444	chr1	243667215	243667216	rs67027895	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	1q44	NR	rs67027895-T	NR	5E-8				Affymetrix [723305]	N
2444	chr1	243667215	243667216	rs67027895	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	1q44	NR	rs67027895-T	NR	2E-8	(EA)	0.05	NR unit increase	Affymetrix [723305]	N
2444	chr1	243667899	243667900	rs9428966	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	1q44		rs9428966-?	NR	9E-11		0.0214	NR unit decrease	NR [4425810] (imputed)	N
2444	chr1	243667899	243667900	rs9428966	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q44	DAB1	rs9428966-?		4E-12				NR [7428630] (imputed)	N
2444	chr1	243667899	243667900	rs9428966	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	1q44	NR	rs9428966-?		1E-8				NR [8377093]	N
2444	chr1	243684018	243684019	rs946824	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	1q44	NA	rs946824-T	0.1355	5E-15		0.0197	[0.015-0.025] unit increase	NR [~ 27400000] (imputed)	N
2444	chr1	243689542	243689543	rs79367267	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 120)	19,670 European ancestry individuals	NA	1q44		rs79367267-?	NR	1E-9				NR [9705931] (imputed)	N
2444	chr1	243690220	243690221	rs139146421	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs139146421-C	0.01394	3E-8	(CCT2)	0.1573	NR unit increase	Illumina [1671387] (imputed)	N
2444	chr1	243690490	243690491	rs13376709	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	1q44	NR	rs13376709-?	NR	9E-11		1.0590752	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
2444	chr1	243690490	243690491	rs13376709	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	1q44	NR	rs13376709-C	NR	6E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2444	chr1	243720472	243720473	rs3766673	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	1q44	NR	rs3766673-C	0.185	5E-9		0.0081086	[0.0054-0.0108] unit decrease	NR [9732723] (imputed)	N
2444	chr1	243740444	243740445	rs72761606	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	1q44	NR	rs72761606-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2444	chr1	243746633	243746634	rs1074657	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	1q44	NR	rs1074657-T	NR	2E-14		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2444	chr1	243776116	243776117	rs35978510	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q44	AKT3	rs35978510-C	NR	2E-7	(EA)	1.0645093	[1.04-1.09]	Illumina [6627481] (imputed)	N
2444	chr1	243776116	243776117	rs35978510	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	1q44	AKT3	rs35978510-C	NR	2E-10		1.066098	[1.05-1.09]	Illumina [6627481] (imputed)	N
2444	chr1	243776116	243776117	rs35978510	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	1q44	AKT3	rs35978510-C	NR	7E-10		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2444	chr1	243787493	243787494	rs6675851	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q44		rs6675851-A	0.19	1E-12		7.12	z score increase	Affymetrix [9061022] (imputed)	N
2445	chr1	243809487	243809488	rs115754292	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	1q44	NR	rs115754292-T	NR	4E-10		0.0297	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
2445	chr1	243811320	243811321	rs10927053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	AKT3	rs10927053-T	0.107143	7E-9		0.021145916	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2445	chr1	243811320	243811321	rs10927053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q44		rs10927053-A	0.8886	2E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2445	chr1	243811320	243811321	rs10927053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q44	Intergenic	rs10927053-A	0.8886	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2445	chr1	243812367	243812368	rs560977020	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	1q44	AKT3	rs560977020-T	0.66	3E-10		0.034	[0.024-0.044] unit increase	Affymetrix [NR] (imputed)	N
2445	chr1	243812658	243812659	rs7514202	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	1q44	AKT3	rs7514202-G	0.134411	7E-9		0.0167289	[0.011-0.022] unit decrease	Affymetrix [NR] (imputed)	N
2445	chr1	243814547	243814548	rs320337	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	1q44	AKT3	rs320337-?	NR	3E-9		5.933	NR z score increase	Illumina [NR] (imputed)	N
2445	chr1	243818464	243818465	rs142654738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	1q44	NR	rs142654738-?	NR	8E-6		0.1783	[0.099-0.258] unit increase	Illumina [at least 560000] (imputed)	N
2445	chr1	243820127	243820128	rs12691548	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	1q44	NR	rs12691548-?		7E-9				NR [8377093]	N
2445	chr1	243823320	243823321	rs4596870	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	1q44		rs4596870-T	0.16	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
2445	chr1	243824068	243824069	rs113771327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	1q44		rs113771327-G	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2445	chr1	243832559	243832560	rs4658403	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		1q44	AKT3	rs4658403-C	0.166309	1E-13		0.0136423	[0.01-0.017] unit increase	Affymetrix [12370749]	N
2445	chr1	243832559	243832560	rs4658403	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q44	NR	rs4658403-C	0.165614	1E-9		0.0166215	[0.011-0.022] unit increase	NR [NR]	N
2445	chr1	243832559	243832560	rs4658403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	1q44		rs4658403-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2445	chr1	243835185	243835186	rs320320	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	1q44	AKT3	rs320320-A	0.80	1E-7	(EA)	1.659	[0.74-2.58] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2445	chr1	243835185	243835186	rs320320	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	1q44	AKT3	rs320320-A	0.48	5E-6	(AA)	4.03	[2.31-5.75] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2445	chr1	243851946	243851947	rs12076373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q44		rs12076373-C	0.16	7E-20		9.13	z score increase	Affymetrix [9061022] (imputed)	N
2445	chr1	243851946	243851947	rs12076373	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	1q44	AKT3	rs12076373-G	0.837	3E-10		1.23	1.16-1.32	Illumina [at least 6769856] (imputed)	N
2445	chr1	243856680	243856681	rs1973284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	1q44		rs1973284-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2445	chr1	243870909	243870910	rs320339	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	1q44	NR	rs320339-T	0.1847	5E-12				NR [9056863] (imputed)	N
2445	chr1	243914610	243914611	rs10927065	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	1q44	AKT3	rs10927065-?	NR	2E-10		6.379	NR z score decrease	Illumina [NR] (imputed)	N
2446	chr1	243943083	243943084	rs4132509	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	1q44	AKT3	rs4132509-A	0.21	2E-6		0.18	[0.10-0.26] unit decrease	Illumina [~ 318327]	N
2446	chr1	243993529	243993530	rs6429439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q44	AKT3	rs6429439-A	0.132162	8E-11		0.021181207	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2446	chr1	243997794	243997795	rs80240706	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	1q44	AKT3	rs80240706-T	NR	9E-7		0.23	[0.14-0.32] unit decrease	Affymetrix [9868623] (imputed)	N
2446	chr1	244015992	244015993	rs4430311	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	1q44	AKT3	rs4430311-?	NR	6E-6	(Trauma exposed controls; EA)			Illumina [up to 871502]	N
2446	chr1	244019997	244019998	rs11590190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q44	Intergenic	rs11590190-A	0.8147	4E-8	(MTAG)	0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2446	chr1	244023666	244023667	rs3008657	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	1q44		rs3008657-G	0.338	3E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
2446	chr1	244025998	244025999	rs2953329	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	1q44	ZBTB18	rs2953329-A	0.593	2E-18		0.0106	[0.0082-0.013] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2446	chr1	244025998	244025999	rs2953329	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	1q44	ZBTB18	rs2953329-A	0.594	5E-13		0.014254021	[0.01-0.018] unit increase	Illumina [9339358] (imputed)	N
2446	chr1	244031225	244031226	rs55777167	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q44	AKT3	rs55777167-C	NR	3E-6		0.51716214	[0.3-0.73] unit decrease	Illumina [> 6200000] (imputed)	N
2446	chr1	244052446	244052447	rs112426408	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	1q44	AKT3	rs112426408-G	NR	3E-7		0.23	[0.15-0.33] unit decrease	Affymetrix [9868623] (imputed)	N
2447	chr1	244096046	244096047	rs559080	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	1q44	NR	rs559080-C	0.716907	9E-6		1.065	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
2447	chr1	244138989	244138990	rs10927094	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	1q44	LOC339529	rs10927094-C	0.36	3E-6		0.06	[0.035-0.085] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
2447	chr1	244142079	244142080	rs113422653	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q44	NR	rs113422653-?	NR	6E-6	(female)	0.22728	[0.13-0.33] unit increase	Affymetrix [7794483] (imputed)	N
2447	chr1	244142079	244142080	rs113422653	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	1q44	NR	rs113422653-?	NR	5E-7		0.23103	[0.14-0.32] unit increase	Affymetrix [7794483] (imputed)	N
2447	chr1	244144530	244144531	rs112369510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	1q44		rs112369510-T	NR	1E-13		0.0291	[0.021-0.037] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2447	chr1	244167800	244167801	rs12127679	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	1q44	ZNF238	rs12127679-T	0.19	1E-6	(AA-triglyceride response)	22.31	[13.24-31.38] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
2447	chr1	244173871	244173872	rs10927101	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1q44	AKT3, ZNF238	rs10927101-A	0.38	2E-6		1.33	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
2447	chr1	244176423	244176424	rs476141	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	1q44	AKT3, ZNF238	rs476141-A	0.51	1E-7		1.37	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
2447	chr1	244184669	244184670	rs10927108	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor-recipient mismatch)	2,799 European ancestry donor-recipient pairs	NA	1q44		rs10927108-C	0.21	2E-8		1.3392369	[1.209467274415909-1.4829301394577163]	Illumina [8515276] (imputed)	N
2448	chr1	244201151	244201152	rs115895312	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Pauljensenia sp000411415 abundance in stool	5,959 Finnish ancestry individuals	NA	1q44		rs115895312-G	0.0139499	2E-8		0.256974	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
2448	chr1	244212865	244212866	rs12027747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q44		rs12027747-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2448	chr1	244232304	244232305	rs74390716	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q44	NR	rs74390716-C	0.1264	2E-9				NR [9056863] (imputed)	N
2448	chr1	244240447	244240448	rs2500488	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	1q44	ZNF238, ADSS	rs2500488-C	0.33	4E-6		1.472	[1.246-1.739]	Illumina [710714]	N
2448	chr1	244242293	244242294	rs2010620	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs2010620-G	0.03659	9E-9	(EPHA6)	0.02428	NR unit increase	Illumina [1671387] (imputed)	N
2448	chr1	244242293	244242294	rs2010620	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs2010620-G	0.03659	1E-9	(ACSM2B)	1.024	NR unit increase	Illumina [1671387] (imputed)	N
2448	chr1	244274454	244274455	rs114018835	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	1q44	AL590483.2	rs114018835-T	0.0359	3E-9		0.0303	[0.02-0.04] unit increase	Affymetrix [18391927] (imputed)	N
2449	chr1	244364878	244364879	rs76327975	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	1q44	NR	rs76327975-G	NR	9E-6	(Hispanic)	7.68	[4.35-11.01] unit increase	Affymetrix [14000000] (imputed)	N
2449	chr1	244377937	244377938	rs10803183	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	1q44	NR	rs10803183-?	NR	5E-6	(dominant model)		NR	Illumina [445723]	N
2449	chr1	244390563	244390564	rs10429924	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	1q44	intergenic	rs10429924-?	NR	1E-6	(EA)	1.61	[NR]	Illumina [up to 531195]	N
2449	chr1	244428530	244428531	rs488109	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	1q44	intergenic	rs488109-G	0.395	4E-6	(AA)	0.475	unit decrease	Illumina [at least 5086170] (imputed)	N
2449	chr1	244437406	244437407	rs622169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q44		rs622169-T	0.4536	3E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2449	chr1	244437406	244437407	rs622169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	1q44	Intergenic	rs622169-T	0.4536	1E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2449	chr1	244448512	244448513	rs517246	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	1q44	NR	rs517246-?	NR	3E-8	(left cerebellum white matter)			NR [9227495] (imputed)	N
2450	chr1	244449422	244449423	rs10803194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	1q44	Intergenic	rs10803194-A	0.5321	4E-16	(MTAG)	0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2450	chr1	244449422	244449423	rs10803194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	1q44	Intergenic	rs10803194-A	0.5321	2E-14		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2450	chr1	244449422	244449423	rs10803194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	1q44	Intergenic	rs10803194-A	0.5329	9E-16	(MTAG)	0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2450	chr1	244449422	244449423	rs10803194	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	1q44	Intergenic	rs10803194-A	0.5423	3E-8	(MTAG)	0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2450	chr1	244452910	244452911	rs651529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	1q44		rs651529-A	0.5131	2E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2450	chr1	244472952	244472953	rs145005509	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	1q44	C1orf100	rs145005509-?	NR	6E-6				Affymetrix, Illumina [15642250] (imputed)	N
2450	chr1	244487742	244487743	rs57203936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q44		rs57203936-G	NR	9E-18		0.0234	[0.018-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2450	chr1	244487926	244487927	rs59072704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	1q44	intergenic	rs59072704-C	0.1408	1E-9		0.03162561	[0.021-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2450	chr1	244487939	244487940	rs61165644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q44	intergenic	rs61165644-G	0.14074	5E-16		0.02601195	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2450	chr1	244487939	244487940	rs61165644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs61165644-G	0.191381	3E-22				Affymetrix, Illumina [23467995] (imputed)	N
2450	chr1	244487939	244487940	rs61165644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q44	NR	rs61165644-G	0.14078	3E-22		0.026402	[0.021-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2450	chr1	244489955	244489956	rs34568450	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	1q44	NR	rs34568450-G	0.1	5E-7		0.114	[0.069-0.159] unit increase	Affymetrix [9012028] (imputed)	N
2450	chr1	244511175	244511176	rs4658627	22560479	Forno E	2012-05-02	J Allergy Clin Immunol	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 children	1q44	C1orf100	rs4658627-A	0.2418	6E-6		0.13	[NR] unit decrease	Illumina [512296]	N
2450	chr1	244533213	244533214	rs3101457	22832964	David SP	2012-05-22	Transl Psychiatry	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NA	1q44	C1orf100	rs3101457-A	0.75	3E-7	(CPD)	0.041	[0.025-0.057] unit increase	Affymetrix, Illumina [~ 2900000] (imputed)	N
2450	chr1	244553506	244553507	rs2126343	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q44	NR	rs2126343-?	NR	7E-6				Affymetrix [NR]	N
2450	chr1	244567915	244567916	rs3101471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	1q44		rs3101471-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2450	chr1	244576716	244576717	rs3102460	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	ADSS	rs3102460-G	0.358	4E-6	(IGFBP-1 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
2451	chr1	244593279	244593280	rs7521072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	1q44		rs7521072-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2451	chr1	244605035	244605036	rs3003214	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	1q44	ADSS	rs3003214-A	0.3176	5E-6	(Complete)	0.37	[0.21-0.53] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2451	chr1	244627755	244627756	rs147250458	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	1q44	C1orf101	rs147250458-A	0.9938	5E-6		1.0142	[0.58-1.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2451	chr1	244710272	244710273	rs3003233	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	1q44	NR	rs3003233-A	0.05	1E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
2453	chr1	244883814	244883815	rs10803241	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	1q44	NR	rs10803241-?		7E-6				Illumina [up to 6969139] (imputed)	N
2453	chr1	244883814	244883815	rs10803241	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	1q44	Intergenic	rs10803241-A	0.4072375	1E-6		0.17697	[0.11-0.25] unit decrease	Illumina [6969139] (imputed)	N
2453	chr1	244914233	244914234	rs113974007	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	1q44	intergenic	rs113974007-C	0.078	1E-15		0.35	[0.27-0.44] unit decrease	Affymetrix [339439]	N
2453	chr1	244916618	244916619	rs7534801	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	1q44	intergenic	rs7534801-?	0.21	3E-6		0.51	[0.29-0.73] unit decrease	Illumina [6112217] (imputed)	N
2453	chr1	244916886	244916887	rs10737896	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	1q44	intergenic	rs10737896-?	0.21	3E-6		0.51	[0.29-0.73] unit decrease	Illumina [6112217] (imputed)	N
2455	chr1	245133538	245133539	rs7542813	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	1q44	EFCAB2	rs7542813-A	0.993	2E-6	(AA)	0.971	NR unit increase	Illumina [NR] (imputed)	N
2455	chr1	245181420	245181421	rs201395236	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	1q44	EFCAB2	rs201395236-T	0.987	5E-8		1.75	[1.43-2.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
2455	chr1	245223966	245223967	rs547441	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	1q44	NR	rs547441-A	0.54	2E-6	(AA)	3.69	[2.22-5.16] bpm increase	Illumina [at least 1100000] (imputed)	N
2456	chr1	245248255	245248256	rs55933343	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	1q44	NR	rs55933343-G	0.01696	4E-6		0.5416	[0.31-0.77] unit increase	Illumina [10677593] (imputed)	N
2456	chr1	245267909	245267910	rs10927395	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	1q44	EFCAB2	rs10927395-?		5E-6	(African American)	0.14135718	[0.081-0.202] unit increase	Illumina [13620258] (imputed)	N
2456	chr1	245338975	245338976	rs112844193	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Ischemic heart disease in rheumatoid arthritis	224 Spanish ancestry patients, 2,765 Spanish ancestry controls	NA	1q44	KIF26B	rs112844193-T	0.054	1E-7		2.67	[1.85-3.85]	Illumina [63089444] (imputed)	N
2457	chr1	245406247	245406248	rs74226487	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	1q44	Intergenic	rs74226487-?		4E-6		2.86	[1.83-4.46]	Illumina [7645193] (imputed)	N
2457	chr1	245418099	245418100	rs4658731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	1q44		rs4658731-G	NR	3E-9		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2457	chr1	245448313	245448314	rs147802074	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	1q44	KIF26B	rs147802074-T		1E-6		0.2	[0.12-0.28] unit increase	Illumina [11789982] (imputed)	N
2457	chr1	245490639	245490640	rs10924173	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	EFCAB2	rs10924173-?	NR	5E-6	(citrulline)	0.26739246	[0.15-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
2457	chr1	245492964	245492965	rs34938134	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q44	KIF26B, EFCAB2	rs34938134-T	NR	8E-6	(daytime napping duration, weekdays)	0.1187	[0.067-0.171] unit increase	Affymetrix [7141204] (imputed)	N
2457	chr1	245494151	245494152	rs34130928	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	1q44	KIF26B, EFCAB2	rs34130928-G	NR	3E-6	(daytime napping duration)	0.1148	[0.066-0.163] unit increase	Affymetrix [7141204] (imputed)	N
2458	chr1	245507915	245507916	rs72761145	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	1q44	NR	rs72761145-C		6E-6		0.1858	[0.11-0.27] SD units decrease	NR [10700000] (imputed)	N
2458	chr1	245541893	245541894	rs6673033	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	1q44	KIF26B	rs6673033-G	0.18	7E-7	(African American)	0.45	[0.27-0.63] unit decrease	Illumina [up to 13042663] (imputed)	N
2458	chr1	245577303	245577304	rs2795071	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	1q44		rs2795071-A	0.32	4E-8		5.48	z score increase	Affymetrix [9061022] (imputed)	N
2458	chr1	245577303	245577304	rs2795071	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	1q44	NR	rs2795071-A	0.3331	3E-8				NR [9056863] (imputed)	N
2458	chr1	245577303	245577304	rs2795071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	1q44	ROR1	rs2795071-?		5E-8				NR [7428630] (imputed)	N
2458	chr1	245580021	245580022	rs472940	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 281)	19,670 European ancestry individuals	NA	1q44		rs472940-?	NR	7E-9				NR [9705931] (imputed)	N
2458	chr1	245580405	245580406	rs1069219	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	1q44		rs1069219-T	0.33	4E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
2458	chr1	245580405	245580406	rs1069219	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	1q44	KIF26B	rs1069219-?		5E-12				NR [7428630] (imputed)	N
2458	chr1	245588094	245588095	rs1756912	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	1q44	KIF26B	rs1756912-A	NR	5E-8		0.0195	[0.004733-0.08038]	Illumina [484621]	N
2458	chr1	245600715	245600716	rs10924198	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	1q44	KIF26B	rs10924198-?		2E-6				Illumina [2668805]	N
2459	chr1	245671690	245671691	rs1934066	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Prothrombin fragments F1+2 levels in ischemic stroke	up to 1,725 European ancestry cases,up to 258 African ancestry cases, up to 117 cases	NA	1q44	NR	rs1934066-?	NR	2E-7				Illumina [7500450] (imputed)	N
2459	chr1	245696571	245696572	rs79599477	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	1q44	NR	rs79599477-A	NR	2E-7		3.825	[2.31-6.32]	Illumina [13976150] (imputed)	N
2459	chr1	245733607	245733608	rs10924245	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	1q44	KIF26B	rs10924245-?	NR	7E-6	(Mood symptoms)	0.1661	[NR] unit decrease	Affymetrix [696491]	N
2459	chr1	245750931	245750932	rs10218792	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	1q44	NR	rs10218792-G	0.27	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2460	chr1	245773040	245773041	rs12041565	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	1q44	KIF26B	rs12041565-T	0.18134712961046	1E-7		0.0036567	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
2460	chr1	245863221	245863222	rs10924309	26348319	Myung W	2015-09-08	Transl Psychiatry	A genome-wide association study of antidepressant response in Koreans.	Response to serotonin reuptake inhibitors in non-psychotic unipolar depression	263 Korean ancestry responder cases, 218 Korean ancestry non-responder cases	118 Korean ancestry responder cases, 112 Korean ancestry non-responder cases	1q44	KIF26B, SMYD3	rs10924309-?	NR	6E-6				Affymetrix [505435] (imputed)	N
2461	chr1	245923714	245923715	rs4654084	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	1q44		rs4654084-G	NR	9E-7		3.03	[1.95-4.71]	Affymetrix [NR] (imputed)	N
2461	chr1	245927241	245927242	rs12035406	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	1q44	SMYD3	rs12035406-G	0.676	6E-7		1.42	[1.24-1.64]	Illumina [7206774] (imputed)	N
2461	chr1	245994871	245994872	rs11808632	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	1q44	SMYD3	rs11808632-T	0.29	4E-6	(additive)	0.07	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
2461	chr1	246001443	246001444	rs12083051	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	1q44	SMYD3	rs12083051-?		4E-7	(additive)	0.14	[0.085-0.195] unit increase	Illumina [1492601] (imputed)	N
2462	chr1	246057732	246057733	rs35961285	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	1q44	NR	rs35961285-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
2462	chr1	246077263	246077264	rs115107872	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q44	SMYD3	rs115107872-G	0.973	4E-6	(AA)	0.275	NR unit increase	Illumina [NR] (imputed)	N
2462	chr1	246080799	246080800	rs116335148	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q44	SMYD3	rs116335148-T	0.973	4E-6	(AA)	0.273	NR unit increase	Illumina [NR] (imputed)	N
2462	chr1	246082883	246082884	rs116647499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	1q44	SMYD3	rs116647499-A	0.973	4E-6	(AA)	0.274	NR unit increase	Illumina [NR] (imputed)	N
2462	chr1	246116194	246116195	rs12133873	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	KIF26B	rs12133873-?	NR	3E-6	(CE 16:1)	0.20423022	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
2463	chr1	246155106	246155107	rs12117603	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q44	SMYD3	rs12117603-T	0.350008	6E-9	(-106 ms)	0.0348026	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
2463	chr1	246155106	246155107	rs12117603	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q44	SMYD3	rs12117603-T	0.350008	3E-8	(-100 ms)	0.0334839	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
2463	chr1	246155106	246155107	rs12117603	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	1q44	SMYD3	rs12117603-T	0.350008	2E-9	(-104 ms)	0.0351745	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
2463	chr1	246157143	246157144	rs28468565	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	1q44	SMYD3	rs28468565-A	0.66	9E-13		0.49	[0.35-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2463	chr1	246157143	246157144	rs28468565	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	1q44	SMYD3	rs28468565-A	0.6833	9E-14		0.5375	[0.4-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2463	chr1	246165903	246165904	rs187895247	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q44	NR	rs187895247-A	NR	3E-6	(female)	0.2067	[0.12-0.29] unit increase	Illumina [11133794] (imputed)	N
2463	chr1	246167008	246167009	rs10802317	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1q44	SMYD3	rs10802317-C	0.3648	9E-6		0.0068	[0.0039-0.0097] unit increase	Affymetrix [~ 7740000] (imputed)	N
2463	chr1	246184602	246184603	rs7512924	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Cognitive impairment	355 European ancestry cases, 6,190 European ancestry controls	NA	1q44		rs7512924-T	0.21	2E-8		1.49	[1.24-1.89]	Illumina [19468843] (imputed)	N
2463	chr1	246212667	246212668	rs10399648	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	1q44	NR	rs10399648-?	NR	3E-6		0.0604	[0.035-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
2463	chr1	246220146	246220147	rs12063211	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q44	NR	rs12063211-?	NR	6E-6				Affymetrix [NR]	N
2463	chr1	246222322	246222323	rs10924473	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q44	NR	rs10924473-?	NR	3E-6		4.665	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2463	chr1	246223119	246223120	rs6693295	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	1q44	intergenic	rs6693295-T	0.19	6E-6		1.14	[1.08-1.21]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2463	chr1	246223119	246223120	rs6693295	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	1q44	intergenic	rs6693295-T	0.19	9E-6		1.15	[1.08-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2464	chr1	246293715	246293716	rs7523878	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	TFB2M	rs7523878-?	NR	4E-6	(symmetric dimethylarginine)	0.19012544	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
2464	chr1	246372879	246372880	rs10802346	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	1q44	SMYD3	rs10802346-C	0.15	8E-6		0.076	[0.043-0.109] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
2464	chr1	246376219	246376220	rs140841346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs140841346-G	0.01568	9E-9	(S100A9)	0.1535	NR unit increase	Illumina [1671387] (imputed)	N
2464	chr1	246391430	246391431	rs115269913	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs115269913-T	0.01568	9E-9	(S100A9)	0.1535	NR unit increase	Illumina [1671387] (imputed)	N
2464	chr1	246405567	246405568	rs150866915	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs150866915-T	0.01568	9E-9	(S100A9)	0.1535	NR unit increase	Illumina [1671387] (imputed)	N
2465	chr1	246444081	246444082	rs1780813	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	1q44	SMYD3	rs1780813-A	0.09	7E-6	(male)	0.32	[0.18-0.46] unit decrease	Illumina [6380737] (imputed)	N
2465	chr1	246444081	246444082	rs1780813	29848360	Julia A	2018-05-30	Arthritis Res Ther	Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus.	Systemic lupus erythematosus	4,943 European ancestry cases, 8,483 European ancestry controls	NA	1q44	SMYD3	rs1780813-?	NR	4E-8		1.8181818	[1.27-3.23]	Illumina [7110321] (imputed)	N
2465	chr1	246516662	246516663	rs142593645	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D interaction	110,023 European ancestry individuals	NA	1q44		rs142593645-?	NR	3E-8		1.52	[0.99-2.05] unit increase	Affymetrix [NR] (imputed)	N
2465	chr1	246538380	246538381	rs6426297	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	1q44	NR	rs6426297-C	0.01	2E-6		1.65	1.34-2.04	NR [at least 8482392] (imputed)	N
2465	chr1	246538380	246538381	rs6426297	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	1q44	NR	rs6426297-C	0.01	2E-6		1.65	1.34-2.04	NR [at least 8482392] (imputed)	N
2466	chr1	246553146	246553147	rs57229473	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	1q44	NR	rs57229473-G	0.07	9E-7	(EA)	1.42	[1.24-1.63]	Affymetrix [7469170] (imputed)	N
2466	chr1	246618944	246618945	rs7550853	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	1q44	SMYD3, LOC255654, TFB2M	rs7550853-C	0.251	8E-6		1.0582347		NR [9372253] (imputed)	N
2466	chr1	246642218	246642219	rs12075932	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	1q44	SMYD3	rs12075932-T	0.176	3E-6		0.11	unit increase	Illumina [5510858] (imputed)	N
2466	chr1	246661235	246661236	rs11800820	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	SMYD3	rs11800820-A	0.164	4E-6	(Total energy expenditure RQ)	0.03	[NR] unit increase	Illumina [899892]	N
2466	chr1	246661235	246661236	rs11800820	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	1q44	SMYD3	rs11800820-A	0.164	4E-6	(Fat oxidation )	0.03	[NR] %NPEE increase	Illumina [899892]	N
2466	chr1	246665346	246665347	rs10802414	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	1q44	SMYD3	rs10802414-G	0.245	5E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
2467	chr1	246711076	246711077	rs35558093	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 1,049 East Asian ancestry individuals	NA	1q44	TFB2M	rs35558093-?	NR	4E-8		21.2	unit decrease	NR [14100000] (imputed)	N
2468	chr1	246847852	246847853	rs7417670	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	1q44	NR	rs7417670-T	0.7764	8E-6		0.1712	[0.096-0.246] unit increase	Illumina [NR] (imputed)	N
2468	chr1	246853199	246853200	rs6413860	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	1q44	NR	rs6413860-?	NR	2E-6	(genus_Olsenella)	0.7517874	[0.45-1.05] unit decrease	Affymetrix [210924]	N
2468	chr1	246853970	246853971	rs187209185	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	1q44	CNST	rs187209185-T	NR	9E-7		0.13510324	[0.08-0.191] unit decrease	Illumina [> 6200000] (imputed)	N
2468	chr1	246862571	246862572	rs3007305	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	1q44	NR	rs3007305-G	0.31999999999999995	9E-6		1.1363636	[1.08-1.2]	NR [at least 8807005] (imputed)	N
2468	chr1	246891259	246891260	rs6426328	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	1q44	SCCPDH	rs6426328-G	0.510213	6E-9		0.0120957	[0.008-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
2468	chr1	246930563	246930564	rs7779	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	1q44		rs7779-C	0.07	3E-11		0.19	unit increase	Illumina [2398641] (imputed)	N
2469	chr1	246968052	246968053	rs4926464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs4926464-C	0.650558	2E-22				Affymetrix, Illumina [17210439] (imputed)	N
2469	chr1	246972200	246972201	rs12728355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	KIF28P	rs12728355-A	0.31254	1E-18		0.02118739	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2469	chr1	247025937	247025938	rs12068067	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	SCCPDH	rs12068067-?	NR	2E-6	(PC 38:6)	0.19887052	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2469	chr1	247035030	247035031	rs11582097	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	SCCPDH	rs11582097-?	NR	6E-6	(TAG 56:6)	0.19529672	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2469	chr1	247065432	247065433	rs7553684	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	ZNF695	rs7553684-?	NR	7E-7	(TAG 58:8)	0.18856558	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2469	chr1	247065432	247065433	rs7553684	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	ZNF695	rs7553684-?	NR	3E-6	(TAG 56:7)	0.17519356	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2469	chr1	247065432	247065433	rs7553684	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	ZNF695	rs7553684-?	NR	2E-6	(TAG 56:8)	0.1804319	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2470	chr1	247090562	247090563	rs72766549	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AHCTF1	rs72766549-?	NR	3E-9	(male)	2.65539	[NR] unit increase	Affymetrix [NR] (imputed)	N
2470	chr1	247128999	247129000	rs72766588	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF695	rs72766588-?	NR	3E-9	(male)	2.65491	[NR] unit increase	Affymetrix [NR] (imputed)	N
2470	chr1	247135845	247135846	rs2818890	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	1q44	ZNF670-ZNF695	rs2818890-T	NR	5E-6	(adjusted for subcutaneous fat)	0.075	[0.042-0.108] unit decrease	Illumina [8511049] (imputed)	N
2470	chr1	247157757	247157758	rs10924887	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	1q44	NR	rs10924887-?	NR	9E-6		4.451	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2470	chr1	247160595	247160596	rs2818894	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF695	rs2818894-?	NR	8E-10		2.48865	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2470	chr1	247173231	247173232	rs115105474	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF670-ZNF695	rs115105474-?	NR	8E-10		2.48682	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2470	chr1	247195824	247195825	rs140699772	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	1q44	NR	rs140699772-A	NR	9E-6		0.1796	[0.1-0.26] unit increase	Illumina [11133794] (imputed)	N
2471	chr1	247214877	247214878	rs4925540	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	1q44	ZNF670	rs4925540-?	NR	2E-6				Affymetrix, Illumina [~ 1300000]	N
2471	chr1	247261124	247261125	rs6670062	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	1q44	NR	rs6670062-T	0.0218	2E-6	(Trans/trans-18:2, EA)	0.0046	[0.0026-0.0066] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2471	chr1	247271107	247271108	rs77469813	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	1q44	NR	rs77469813-T	0.0216	9E-6		1.8695084	[1.59-2.15]	Illumina [8567708] (imputed)	N
2471	chr1	247301869	247301870	rs79920190	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	1q44	NR	rs79920190-?	NR	3E-9				Illumina [7760689] (imputed)	N
2472	chr1	247337411	247337412	rs2201596	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	1q44	NR	rs2201596-G		1E-6		0.2844	[0.17-0.4] unit decrease	Illumina [NR] (imputed)	N
2472	chr1	247348188	247348189	rs3738443	21314694	Kendler KS	2011-02-11	Alcohol Clin Exp Res	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Alcohol dependence	2,357 European ancestry individuals, 812 African American individuals	NA	1q44	ZNF124	rs3738443-A	0.033	4E-6	(AA)			Affymetrix [NR]	N
2472	chr1	247356731	247356732	rs12025262	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin and paclitaxel in ovarian cancer (Caspase 3/7 EC50)	74 lymphoblastoid cell lines	NA	1q44	ZNF731P	rs12025262-?	NR	7E-7				Illumina [6243550] (imputed)	N
2472	chr1	247417861	247417862	rs4388736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q44		rs4388736-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2472	chr1	247427616	247427617	rs1578862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	1q44	intergenic	rs1578862-C	0.38	5E-12		0.02537002	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
2472	chr1	247454390	247454391	rs11579326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q44	Y_RNA	rs11579326-T	0.377231	4E-19		0.020389935	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2472	chr1	247458250	247458250	rs56062828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	Y_RNA, ZNF496	rs56062828-GA	0.619561	3E-12		0.016107976	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2473	chr1	247511917	247511918	rs141709616	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	1q44		rs141709616-?	NR	2E-6		0.9348025	[0.55-1.32] unit increase	Illumina [9842460] (imputed)	N
2473	chr1	247563889	247563890	rs35268627	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	1q44		rs35268627-C	0.12956199999999995	3E-12		1.0468003	[1.03-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
2473	chr1	247569299	247569300	rs61838753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q44		rs61838753-C	0.672359	1E-13		0.017677953	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2473	chr1	247569299	247569300	rs61838753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	1q44		rs61838753-C	0.672367	6E-9		0.013800415	[0.0091-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
2473	chr1	247572527	247572528	rs10802496	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q44	NR	rs10802496-T	0.168419	4E-12		0.0192288	[0.014-0.025] unit increase	NR [NR]	N
2473	chr1	247583676	247583677	rs10925015	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		1q44	NLRP3	rs10925015-?	NR	8E-6				Illumina [~ 2400000] (imputed)	N
2473	chr1	247584057	247584057	rs72504922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q44	NLRP3	rs72504922-TC	0.831929	4E-12		0.020532329	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2473	chr1	247584590	247584591	rs12048215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q44	NR	rs12048215-G	NR	3E-11		0.0257	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
2473	chr1	247584590	247584591	rs12048215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs12048215-G	NR	8E-24		0.0373	[0.03-0.045] unit increase	Affymetrix [9000000] (imputed)	N
2473	chr1	247592174	247592175	rs12728998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs12728998-T	NR	4E-10		0.0197	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2474	chr1	247600300	247600301	rs1539019	20031576	Dehghan A	2009-04-01	Circ Cardiovasc Genet	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry female individuals	1q44	NLRP3	rs1539019-A	0.37	1E-8		0.04	[0.03-0.05] g/L decrease	Affymetrix, Illumina [~ 2661766] (imputed)	N
2474	chr1	247600790	247600791	rs61841187	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs61841187-T	0.839	6E-19				Affymetrix [10369434] (imputed)	N
2474	chr1	247601356	247601357	rs12143966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	1q44		rs12143966-A	NR	7E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2474	chr1	247601356	247601357	rs12143966	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	1q44	NLRP3	rs12143966-G	0.59	2E-10		6.35	z-score increase	Affymetrix [4314223] (imputed)	N
2474	chr1	247601356	247601357	rs12143966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q44		rs12143966-?	NR	5E-11				NR [~ 8900000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	1q44		rs12239046-C	NR	1E-26		0.0214	[0.017-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	1q44		rs12239046-C	NR	1E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	1q44		rs12239046-C	NR	2E-30		0.025	[0.021-0.029] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1q44		rs12239046-T	0.372	8E-16				Affymetrix [10369434] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	1q44		rs12239046-T	0.372	3E-8				Affymetrix [10369434] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	1q44	NR	rs12239046-?	NR	1E-9		0.0499449	[0.034-0.066] unit increase	Illumina [30861016] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q44		rs12239046-?	NR	2E-31				NR [~ 8900000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q44	NLRP3	rs12239046-T	0.38	6E-25	(BMI-adjusted)	0.041	[0.033-0.049] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		1q44	NLRP3	rs12239046-?	NR	1E-20		0.0103	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		1q44	NLRP3	rs12239046-?	NR	1E-21		0.0102	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6282	6E-18		0.03195252	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6282	3E-19		0.0332348	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6282	2E-18		0.03257422	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6281	2E-9		0.02202123	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6281	3E-19		0.03323564	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6282	1E-18		0.03271453	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	1q44	NLRP3	rs12239046-C	0.6283	2E-18		0.03240568	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247601594	247601595	rs12239046	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	1q44	NLRP3	rs12239046-C	NR	1E-15		0.047	[0.04-0.06] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2474	chr1	247601777	247601778	rs58546652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	1q44		rs58546652-C	0.372139	4E-9		0.0249833	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
2474	chr1	247601885	247601886	rs56015600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	1q44		rs56015600-G	NR	4E-52		0.0336	[0.029-0.038] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2474	chr1	247601885	247601886	rs56015600	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q44	NR	rs56015600-A	0.370456	1E-74		0.0380836	[0.034-0.042] unit decrease	NR [NR]	N
2474	chr1	247602307	247602308	rs67090117	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q44	NLRP3	rs67090117-T	0.38	9E-24		0.043	[0.035-0.051] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
2474	chr1	247602967	247602968	rs4925546	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	1q44	NLRP3	rs4925546-A	0.371857	8E-17		0.00335963	[0.0026-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
2474	chr1	247602967	247602968	rs4925546	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	1q44	NLRP3	rs4925546-A	0.37	2E-14		7.69	z-score increase	Affymetrix [4312306] (imputed)	N
2474	chr1	247603380	247603398	rs144084486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q44	NLRP3	rs144084486-G	0.6358	7E-12		0.02619019	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247605598	247605599	rs10157379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	1q44		rs10157379-T	NR	9E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
2474	chr1	247605598	247605599	rs10157379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q44	NLRP3	rs10157379-T	0.628637	2E-9		0.013778579	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247605598	247605599	rs10157379	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	1q44	NLRP3	rs10157379-C	0.38	6E-29		0.0103	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
2474	chr1	247605598	247605599	rs10157379	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	1q44	NLRP3	rs10157379-T	0.62	1E-19	(EA)	0.01	[0.008-0.012] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	1q44		rs56188865-T	0.627785	2E-11		0.0284892	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	1q44		rs56188865-C	NR	6E-18		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	1q44		rs56188865-C	NR	6E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	1q44	NLRP3	rs56188865-T	0.63	1E-15		8.02	z-score increase	Affymetrix [4311822] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q44	NLRP3	rs56188865-C	0.371641	4E-31		0.026477227	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q44	NLRP3	rs56188865-C	0.371672	4E-9		0.013497862	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q44	NLRP3	rs56188865-C	0.371681	2E-13		0.016886689	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q44	NLRP3	rs56188865-C	0.371694	1E-29		0.025954599	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q44	NLRP3	rs56188865-C	0.371768	1E-13		0.017061485	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs56188865-C	0.383224	3E-46				Affymetrix, Illumina [24649327] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	1q44	NR	rs56188865-C	0.374222	7E-46		0.027014	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs56188865-C	0.381089	2E-44				Affymetrix, Illumina [23114412] (imputed)	N
2474	chr1	247606275	247606276	rs56188865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	1q44	NR	rs56188865-C	0.373715	2E-43		0.027427	[0.024-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2474	chr1	247607972	247607973	rs139814109	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	1q44		rs139814109-?	NR	3E-16		0.322578	[0.24-0.4] unit decrease	NR [9800000] (imputed)	N
2474	chr1	247607972	247607973	rs139814109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs139814109-T	NR	4E-13		0.3137	[0.23-0.4] unit decrease	Affymetrix [9000000] (imputed)	N
2474	chr1	247611313	247611314	rs112008153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q44	NLRP3	rs112008153-C	0.1586	1E-15		0.025131052	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247611659	247611661	rs201053423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs201053423-C	NR	1E-10		0.0324	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
2474	chr1	247612201	247612202	rs10802501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44	NLRP3	rs10802501-A	0.161896	4E-11		0.020363161	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247612561	247612562	rs10925027	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	1q44	NLRP3	rs10925027-T	0.4	4E-21		0.036	[0.028-0.044] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
2474	chr1	247614895	247614896	rs11583410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs11583410-C	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
2474	chr1	247615261	247615262	rs35305980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs35305980-G	NR	3E-22		0.0232	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2474	chr1	247619154	247619155	rs9988571	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	1q44	NLRP3	rs9988571-T	0.22	4E-11		0.033	[0.023-0.043] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
2474	chr1	247619190	247619191	rs9988620	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	1q44	NR	rs9988620-A	0.207258	4E-19		0.0222816	[0.017-0.027] unit decrease	NR [NR]	N
2474	chr1	247622697	247622698	rs10925040	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	1q44	NR	rs10925040-C		3E-6		0.1755	[0.1-0.25] SD units decrease	NR [10700000] (imputed)	N
2474	chr1	247622873	247622874	rs4925671	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	1q44	OR2B11	rs4925671-?	NR	4E-9		0.0017	[0.0011-0.0023] unit increase	Affymetrix [21347608] (imputed)	N
2474	chr1	247622873	247622874	rs4925671	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	1q44	OR2B11	rs4925671-?	NR	7E-10		0.0023	[0.0013-0.0033] unit increase	Affymetrix [21347608] (imputed)	N
2474	chr1	247622873	247622874	rs4925671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	1q44	NR	rs4925671-C	NR	6E-14		0.0194	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2474	chr1	247623871	247623872	rs4604732	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	1q44	OR2B11	rs4604732-T	0.82	2E-6		0.08	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2474	chr1	247639224	247639225	rs146690913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q44		rs146690913-C	0.11314	2E-12		0.024570864	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247647792	247647793	rs7512601	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	1q44	OR2W5	rs7512601-?	NR	4E-7	(Gustin)			Illumina [4020654] (imputed)	N
2474	chr1	247651139	247651140	rs10925060	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	1q44	OR2W5, NLRP3	rs10925060-T	0.0251	9E-13	(EA, men)	0.045	[0.033-0.057] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2474	chr1	247653411	247653412	rs10802516	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	1q44	OR2W5	rs10802516-?	NR	6E-6	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
2474	chr1	247675558	247675559	rs7550918	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	1q44	LOC148824	rs7550918-T	NR	3E-11		3.133	[2.21-4.06] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2474	chr1	247689531	247689532	rs1881797	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	1q44	OR2C3	rs1881797-C	0.18	7E-6		1.52	[1.20-1.80]	Affymetrix [307944]	N
2474	chr1	247710866	247710867	rs1105489	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs1105489-G	0.728	8E-41				Affymetrix [10369434] (imputed)	N
2474	chr1	247710949	247710950	rs7556466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	1q44		rs7556466-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2474	chr1	247710949	247710950	rs7556466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q44		rs7556466-G	0.728	9E-13				Affymetrix [10369434] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q44	GCSAML	rs41315846-C	0.476511	1E-13		0.017592732	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	GCSAML	rs41315846-C	0.476535	1E-50		0.035003193	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44	GCSAML	rs41315846-C	0.476534	8E-42		0.032291315	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	GCSAML	rs41315846-C	0.476496	4E-59		0.03855868	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q44	GCSAML	rs41315846-C	0.4763	9E-23		0.03646343	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q44	GCSAML	rs41315846-C	0.4763	1E-47		0.05293753	[0.046-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q44	GCSAML	rs41315846-C	0.476	2E-54		0.0575124	[0.05-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q44	GCSAML	rs41315846-C	0.4763	3E-54		0.05691697	[0.05-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247712302	247712303	rs41315846	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	1q44	GCSAML	rs41315846-C		3E-34	(PLT)	0.048	[0.04-0.056] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
2474	chr1	247713605	247713606	rs55767407	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs55767407-T	0.773	1E-8				Affymetrix [10369434] (imputed)	N
2474	chr1	247715997	247715998	rs6426257	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	1q44	C1orf150	rs6426257-?	NR	6E-6	(conditioned on rs4814175)	0.027	[0.015-0.039] unit increase	Affymetrix [9346801] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urticaria	9,893 East Asian ancestry cases, 162,190 East Asian ancestry controls	NA	1q44		rs56043070-A	0.058305933	7E-12		0.2190658	[0.16-0.28] unit increase	Illumina [13429081] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urticaria	1,057 European ancestry cases, 482,892 European ancestry controls, 9,893 East Asian ancestry cases, 162,190 East Asian ancestry controls	NA	1q44		rs56043070-A	NR	3E-15		0.2385	[0.18-0.3] unit increase	Affymetrix, Illumina [25844326] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	1q44		rs56043070-A	NR	5E-174		0.1059	[0.098-0.113] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	1q44		rs56043070-A	0.059268	2E-14		0.0535641	[0.04-0.067] unit decrease	Illumina [13478928] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q44		rs56043070-G	0.929	2E-28				Affymetrix [10369434] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs56043070-G	0.929	5E-119				Affymetrix [10369434] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	1q44	OR2C3	rs56043070-?	NR	3E-9		0.0791	NR L increase	Affymetrix [9390170] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on basophil	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q44		rs56043070-A	0.05659	6E-10		0.4881	[0.33-0.64] unit increase	Illumina [16937736] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR-	1,558 Sardinian (founder/genetic isolate) ancestry individuals	NA	1q44		rs56043070-A	0.05649	2E-10		0.5006	[0.35-0.65] unit increase	Illumina [16943119] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.071335	7E-18		0.037321977	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.071335	1E-20		0.040485784	[0.032-0.049] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.070539	1E-61		0.07597757	[0.067-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.070537	7E-134		0.11120212	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.070528	1E-151		0.11909731	[0.11-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.071357	4E-17		0.03592543	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.0705440000000001	2E-131		0.10981998	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q44	GCSAML	rs56043070-A	0.071379	2E-11		0.02900356	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs56043070-A	0.0664628	2E-321				Affymetrix, Illumina [24588908] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q44	NR	rs56043070-A	0.070553	5E-314		0.134892	[0.13-0.14] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q44	NR	rs56043070-A	0.071302	4E-10		0.022694	[0.016-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	1q44	NR	rs56043070-A	0.071468	6E-11		0.026025	[0.018-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.072	8E-15		0.0537029	[0.04-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.072	1E-17		0.05922637	[0.046-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.0712	4E-43		0.09746174	[0.084-0.111] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.0712	5E-75		0.1275088	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.0714	3E-86		0.1387784	[0.12-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247719768	247719769	rs56043070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q44	GCSAML	rs56043070-A	0.0712	1E-60		0.1148954	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	1q44	NR	rs74227709-A	NR	3E-9		0.0289	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q44	GCSAML	rs74227709-A	0.07165	5E-11		0.0282287	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	1q44	NR	rs74227709-A	0.071527	3E-15		0.028903	[0.022-0.036] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	1q44		rs74227709-?	0.07169	5E-15		0.007037	unit increase	NR [6200000] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	1q44		rs74227709-?	0.07169	5E-11		0.01391	unit increase	NR [6200000] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	1q44		rs74227709-?	0.07169	1E-10		0.01683	unit increase	NR [6200000] (imputed)	N
2474	chr1	247722587	247722588	rs74227709	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	1q44	GCSAML	rs74227709-A	0.071	1E-13	(P-selectin, SELP.4154.57.2)	0.35	[0.25-0.45] unit increase	Affymetrix [10572788] (imputed)	N
2475	chr1	247781568	247781569	rs1144815	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	1q44	intergenic	rs1144815-?		9E-6				NR [~ 3000000] (imputed)	N
2475	chr1	247791973	247791974	rs1779897	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs1779897-T	0.46	2E-8				Affymetrix [10369434] (imputed)	N
2475	chr1	247811290	247811291	rs74152685	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	1q44	NR	rs74152685-?	NR	3E-7	(AA, adjusted for duration of diabetes and glycemic control)	2.564103	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2476	chr1	247865772	247865773	rs3862188	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	1q44	RP11-634B7.4	rs3862188-G	0.28	3E-8		1.87	[1.50-2.33]	Illumina [714494]	N
2476	chr1	247876967	247876968	rs60085550	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	1q44	OR6F1	rs60085550-G	0.97	2E-7	(BDRABS, AA)	0.157	[0.098-0.216] unit increase	Illumina [NR] (imputed)	N
2476	chr1	247888787	247888791	rs539862993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q44	RP11-634B7.4	rs539862993-T	0.081195	5E-10		0.02622766	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2476	chr1	247910459	247910460	rs841163	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	1q44	NR	rs841163-?	NR	8E-6				Illumina [1735619]	N
2476	chr1	247946159	247946160	rs9633402	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	1q44	TRIM58	rs9633402-?		3E-6	(Dominant)	2.5	[1.67-5]	Illumina [5600610] (imputed)	N
2477	chr1	248004613	248004614	rs6667389	28262088	Melroy-Greif WE	2017-03-06	Twin Res Hum Genet	Genome-Wide Association Study of Post-Traumatic Stress Disorder in Two High-Risk Populations.	Post traumatic stress disorder symptom count in trauma-exposed individuals	254 Mexican American individuals, 258 American Indian individuals	NA	1q44	OR11L1	rs6667389-G	0.08394	2E-6	(Hispanic)	4.183	[2.51-5.86] unit increase	Affymetrix [258441] (imputed)	N
2477	chr1	248006763	248006764	rs7537660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q44	OR11L1	rs7537660-T	0.8772	4E-17		0.04606674	[0.035-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248010299	248010300	rs12087575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q44		rs12087575-T	0.06811	8E-11		0.029931344	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248016377	248016378	rs72772787	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	1q44	TRIM58	rs72772787-?	NR	4E-6	(Response)	2.34	[NR]	Illumina [~ 7000000] (imputed)	N
2477	chr1	248020447	248020448	rs10749636	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	1q44	NR	rs10749636-A	0.654752	5E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [23037915] (imputed)	N
2477	chr1	248020447	248020448	rs10749636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44	TRIM58	rs10749636-A	0.760769	6E-11		0.018234858	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248020447	248020448	rs10749636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q44	TRIM58	rs10749636-A	0.761429	7E-22		0.026374873	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248020555	248020556	rs11204523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	TRIM58	rs11204523-C	0.759352	3E-27		0.030181317	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248020555	248020556	rs11204523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	TRIM58	rs11204523-C	0.759334	7E-44		0.047703035	[0.041-0.054] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248022378	248022379	rs11204524	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	1q44	OR11L1	rs11204524-?	NR	3E-7	(serotonin)	0.29906347	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
2477	chr1	248022669	248022670	rs57999214	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q44	TRIM58	rs57999214-G	0.1322	2E-17		0.04496497	[0.035-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248022832	248022833	rs61855700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q44	TRIM58	rs61855700-G	0.156606	6E-9		0.019121787	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248024072	248024073	rs3737276	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q44	TRIM58	rs3737276-C	0.2797379	4E-14	(EA, Dynein light chain roadblock-type 1)	0.3613	[0.27-0.45] unit increase	Affymetrix [509946]	N
2477	chr1	248028779	248028780	rs79322592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	1q44	TRIM58	rs79322592-C	0.2513	5E-22		0.04038865	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248032236	248032236	rs35237755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q44	OR2W3, TRIM58	rs35237755-CT	0.108073	2E-17		0.032338448	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248032236	248032236	rs35237755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q44	OR2W3, TRIM58	rs35237755-CT	0.108071	3E-27		0.04266193	[0.035-0.05] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248032236	248032236	rs35237755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q44	TRIM58, OR2W3	rs35237755-CT	0.1095	2E-54		0.0896239	[0.078-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248032236	248032236	rs35237755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q44	TRIM58, OR2W3	rs35237755-CT	0.1095	2E-54		0.08974805	[0.078-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248033452	248033453	rs72774606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q44	NR	rs72774606-A	NR	4E-13		0.036	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
2477	chr1	248036553	248036554	rs4925747	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	1q44	TRIM58	rs4925747-?	NR	8E-10		0.0271	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
2477	chr1	248037645	248037646	rs9803999	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	1q44	NR	rs9803999-C	0.616319	8E-13		0.02823	[0.021-0.036] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
2477	chr1	248037989	248037990	rs72774609	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	1q44	TRIM58, OR2W3	rs72774609-A	0.3099	2E-27		0.04151218	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248038196	248038197	rs4925748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q44	OR2W3, TRIM58	rs4925748-G	0.311221	1E-10		0.020489458	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248038209	248038210	rs35340377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	1q44		rs35340377-A	0.165636	2E-11		0.0309067	[0.022-0.04] unit increase	Illumina [13479091] (imputed)	N
2477	chr1	248038209	248038210	rs35340377	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	1q44	TRIM58	rs35340377-?	NR	2E-28		0.06515	[0.054-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
2477	chr1	248038209	248038210	rs35340377	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	1q44	TRIM58, OR2W3	rs35340377-A	0.279	2E-18		0.03459661	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248038211	248038212	rs4925749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q44	OR2W3, TRIM58	rs4925749-A	0.118501	3E-22		0.034321614	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248038211	248038212	rs4925749	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q44	TRIM58	rs4925749-A	NR	1E-8		0.0362109	[0.024-0.049] unit increase	Affymetrix [16832071] (imputed)	N
2477	chr1	248038324	248038325	rs4925750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	OR2W3, TRIM58	rs4925750-C	0.31239	2E-30		0.04275895	[0.035-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248038324	248038325	rs4925750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs4925750-T	0.686288	1E-253				Affymetrix, Illumina [17210439] (imputed)	N
2477	chr1	248038324	248038325	rs4925750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	1q44	NR	rs4925750-T	0.687828	4E-254		0.069862	[0.066-0.074] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2477	chr1	248038324	248038325	rs4925750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	1q44	TRIM58, OR2W3	rs4925750-C	0.3112	9E-17		0.03270647	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.10942	6E-290		0.13754018	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.109426	6E-206		0.13511938	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.109996	6E-117		0.086442865	[0.079-0.094] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.109992	3E-13		0.035829715	[0.026-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.109372	2E-301		0.13565868	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q44	TRIM58	rs1339847-A	0.109377	2E-302		0.13983628	[0.13-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	1q44	TRIM58	rs1339847-A	0.09688755	9E-33	(Dynein light chain roadblock-type 1)	0.8472	[0.71-0.98] unit increase	Affymetrix [509946]	N
2477	chr1	248039293	248039294	rs1339847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	1q44	TRIM58	rs1339847-A	0.1095	1E-208		0.176416	[0.17-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	1q44	TRIM58	rs1339847-A	0.1095	4E-196		0.1711099	[0.16-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q44	TRIM58	rs1339847-A	0.1103	4E-48		0.08377635	[0.073-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q44	TRIM58	rs1339847-A	0.1095	2E-89		0.1147384	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039293	248039294	rs1339847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q44	TRIM58	rs1339847-A	0.1095	1E-86		0.1128645	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRDX3	5,364 Icelandic ancestry individuals	NA	1q44		rs3811444-T	0.3335	3E-17		0.161689	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFA	5,358 Icelandic ancestry individuals	NA	1q44		rs3811444-T	0.3335	1E-13		0.147383	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAM3	5,358 Icelandic ancestry individuals	NA	1q44		rs3811444-T	0.3335	2E-12		0.131548	[0.095-0.168] unit decrease	Illumina [7506463] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	1E-67		0.033	[0.029-0.037] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	2E-140		0.0556	[0.051-0.06] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	1q44		rs3811444-T	0.185094	1E-40		0.0615463	[0.053-0.071] unit decrease	Illumina [13476266] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	3E-73		0.0399	[0.036-0.044] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	1q44		rs3811444-T	0.185215	7E-51		0.0696883	[0.061-0.079] unit increase	Illumina [13477028] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	1E-39		0.0291	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	2E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	2E-23		0.0222	[0.018-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	1q44		rs3811444-T	NR	9E-24		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	1q44		rs3811444-C	0.665	7E-38				Affymetrix [10369434] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	1q44		rs3811444-C	0.665	2E-36				Affymetrix [10369434] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	1q44		rs3811444-C	0.665	2E-11				Affymetrix [10369434] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	1q44		rs3811444-C	0.667	1E-81		0.22	[0.2-0.24] % increase	Affymetrix [NR] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	1q44		rs3811444-T	NR	2E-16		0.34	[0.26-0.42] unit decrease	Illumina [97506867]	N
2477	chr1	248039450	248039451	rs3811444	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	NR	1E-23		0.026	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	1q44	TRIM58	rs3811444-C	0.717779	1E-28	(spermidine)	0.286	[0.24-0.34] unit decrease	Illumina [13039987] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334495	3E-24		0.023652373	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334488	7E-184		0.069951795	[0.065-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334504	2E-77		0.04330926	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.333378	3E-31		0.029265665	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334457	2E-22		0.022735275	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334576	4E-190		0.068334036	[0.064-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.33451	5E-255		0.083887696	[0.079-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334518	2E-146		0.0583329	[0.054-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334491	6E-65		0.0400555	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334534	4E-54		0.036063585	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334466	2E-9		0.013916397	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334539	5E-328		0.09946213	[0.094-0.104] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334495	2E-134		0.059673253	[0.055-0.064] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334496	7E-170		0.071412064	[0.066-0.076] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	1q44	TRIM58	rs3811444-T	0.334557	4E-24		0.023616802	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	1q44	NR	rs3811444-C	0.807171	6E-11		0.030424	[0.021-0.04] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-C	0.671204	8E-224				Affymetrix, Illumina [22063850] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	1q44	NR	rs3811444-C	0.664432	3E-226		0.063719	[0.06-0.068] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.300675	3E-102				Affymetrix, Illumina [24332387] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q44	NR	rs3811444-T	0.335726	1E-101		0.041658	[0.038-0.045] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.30495	6E-256				Affymetrix, Illumina [24246363] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	1q44	NR	rs3811444-T	0.335733	3E-225		0.061339	[0.058-0.065] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.301215	4E-135				Affymetrix, Illumina [21126107] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	1q44	NR	rs3811444-T	0.335242	1E-95		0.043939	[0.04-0.048] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.302275	1E-58				Affymetrix, Illumina [20825802] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	1q44	NR	rs3811444-T	0.33514	5E-60		0.033245	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.309688	2E-13				Affymetrix, Illumina [23472807] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs3811444-T	0.301811	3E-29				Affymetrix, Illumina [24653286] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	1q44	NR	rs3811444-T	0.336218	6E-31		0.022497	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T		2E-24		0.023	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	1q44		rs3811444-?	NR	5E-23				NR [~ 8900000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q44		rs3811444-?	NR	2E-243				NR [~ 8900000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q44		rs3811444-?	NR	5E-85				NR [~ 8900000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	1q44		rs3811444-?	NR	3E-54				NR [~ 8900000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	1q44	TRIM58	rs3811444-?	NR	2E-44		0.07609	[0.065-0.087] unit increase novel	Illumina [6108953] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.333	6E-59		0.0664232	[0.058-0.075] unit decrease	Affymetrix [16832071] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	1q44	TRIM58	rs3811444-T	0.281	4E-6		0.382	[0.22-0.54] fL decrease	Illumina [27801688] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q44	TRIM58	rs3811444-T	NR	1E-9	(Asian)	0.0047	[0.0031-0.0063] unit decrease	NR [2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	1q44	TRIM58	rs3811444-?	NR	3E-14				NR [2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3359	2E-9		0.02284256	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.336	1E-29		0.04242943	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3348	2E-62		0.06369665	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3359	2E-63		0.06266884	[0.055-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.336	4E-39		0.04786762	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3362	3E-172		0.1048891	[0.098-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3362	1E-22		0.03708004	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.3362	1E-30		0.04355681	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	1q44	TRIM58	rs3811444-T	0.336	1E-9		0.02286733	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	1q44	TRIM58, OR2W3, OR11L1, SMYD3	rs3811444-?	NR	9E-16	(Stearoylcarnitine)	0.05087461	[0.039-0.063] unit increase	Affymetrix [2619023] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	1q44	TRIM58	rs3811444-T	0.32	5E-11	(OA)	0.127	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	1q44	TRIM58	rs3811444-T	0.35	5E-10	(EA, RBCC)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
2477	chr1	248039450	248039451	rs3811444	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	1q44	TRIM58	rs3811444-C	NR	6E-9		3.346	[2.22-4.47] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2477	chr1	248039712	248039713	rs3811445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	1q44	TRIM58	rs3811445-G	0.5815	6E-65		0.06109995	[0.054-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
2477	chr1	248041181	248041182	rs10888263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	1q44	TRIM58	rs10888263-G	0.582152	7E-17		0.022940956	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248041181	248041182	rs10888263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	1q44	TRIM58	rs10888263-G	0.582106	1E-28		0.027913824	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248041794	248041795	rs61855715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	1q44	OR2W3	rs61855715-G	0.468595	7E-42		0.037000574	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2477	chr1	248041820	248041821	rs66858280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	1q44	NR	rs66858280-C	0.811527	2E-33		0.063891	[0.054-0.074] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
2477	chr1	248041820	248041821	rs66858280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	1q44	NR	rs66858280-C	0.811548	3E-46		0.074081	[0.064-0.084] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
2477	chr1	248046271	248046272	rs11204538	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	1q44	TRIM58	rs11204538-C	0.16	2E-8		0.091	[0.060-0.122] unit decrease	Illumina [561583]	N
2477	chr1	248058549	248058550	rs1337875	26029870	Ye Z	2015-06-01	Nat Genet	Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma.	Sporadic pituitary adenoma	771 Han Chinese cases, 2,788 Han Chinese controls	2,542 Han Chinese cases, 3,620 Han Chinese controls	1q44	NR	rs1337875-G	NR	6E-6		1.37	[NR]	Illumina [720770]	N
2477	chr1	248061934	248061935	rs3939638	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	1q44	OR2W3	rs3939638-T	0.1663	4E-7		0.0104	[0.0063-0.0145] unit increase	Affymetrix [~ 7740000] (imputed)	N
2477	chr1	248075397	248075398	rs10788734	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	1q44	OR2T8	rs10788734-?	NR	6E-6				Affymetrix, Illumina [15642250] (imputed)	N
2477	chr1	248097197	248097198	rs77842379	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	1q44		rs77842379-?	NR	2E-7		8.03743	[7.26-8.82]	NR [674885]	N
2477	chr1	248111642	248111643	rs12564165	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	1q44	NR	rs12564165-?	NR	3E-8		5.533	NR z score decrease	Illumina [at least 830937] (imputed)	N
2479	chr1	248352333	248352334	rs4475789	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	1q44	OR2M2	rs4475789-G	0.6547	1E-7		0.0083	[0.0052-0.0114] unit increase	Affymetrix [~ 7740000] (imputed)	N
2480	chr1	248404653	248404654	rs10888329	26398136	Kuo PH	2015-09-23	PLoS One	Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.	Autism spectrum disorder	315 Han Chinese ancestry cases, 1,115 Han Chinese ancestry controls	282 Han Chinese ancestry cases, 480 Han Chinese ancestry controls	1q44	OR2M4	rs10888329-?	0.804	8E-6		1.82	[1.39-2.33]	Affymetrix [546171]	N
2480	chr1	248405766	248405767	rs572907029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	1q44		rs572907029-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2480	chr1	248414429	248414430	rs115706669	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	1q44	NR	rs115706669-G	0.9508678	7E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
2480	chr1	248438451	248438452	rs6587444	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	1q44	NR	rs6587444-?	NR	2E-12				Affymetrix [NR]	N
2480	chr1	248458765	248458766	rs41310573	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	1q44	OR2T12	rs41310573-?	NR	4E-20				Illumina [83898]	N
2480	chr1	248496862	248496863	rs4481887	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	1q44	OR2M7	rs4481887-G	0.74	7E-24	(asparagus anosmia)	1.67	[NR]	Illumina [535076]	N
2482	chr1	248686976	248686977	rs536621801	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs536621801-G	0.08014	3E-9	(CALR)	0.3891	NR unit increase	Illumina [1671387] (imputed)	N
2482	chr1	248689886	248689887	rs181103244	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	1q44	NR	rs181103244-?	NR	6E-6		0.491224	[0.28-0.7] unit decrease	NR [13958389] (imputed)	N
2482	chr1	248737350	248737351	rs78741389	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs78741389-A	0.01916	2E-8	(SLC25A5)	0.08994	NR unit increase	Illumina [1671387] (imputed)	N
2483	chr1	248832301	248832302	rs28608540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	1q44	NR	rs28608540-T	0.01045	2E-9	(FDXR)	0.0386	NR unit increase	Illumina [1671387] (imputed)	N
2485	chr1	249127570	249127571	rs10888591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	1q44		rs10888591-C	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2485	chr1	249154566	249154567	rs10157709	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	1q44	ZNF672, ZNF692, PGBD2	rs10157709-C	0.05	2E-6		2.26	[1.76-2.91]	Illumina [5258576] (imputed)	N
2485	chr1	249155908	249155909	rs4926499	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	1q44	AL672294.1	rs4926499-C	0.8245	3E-15		0.2954	[0.22-0.37] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2486	chr1	249168435	249168436	rs12032643	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		1q44	intergenic	rs12032643-?	0.896	1E-9			[NR]	Affymetrix, Illumina [152234]	N
2486	chr1	249172186	249172187	rs12071510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	1q44	NR	rs12071510-T	0.574474	3E-20				Affymetrix, Illumina [24588908] (imputed)	N
2486	chr1	249172186	249172187	rs12071510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	1q44	NR	rs12071510-T	0.637959	8E-22		0.018427	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2486	chr1	249172186	249172187	rs12071510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	1q44		rs12071510-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	1q44		rs4335411-A	NR	9E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	1q44		rs4335411-A	NR	1E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	1q44		rs4335411-A	0.762184	7E-10		0.016954146	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	1q44		rs4335411-A	0.76208	2E-15		0.022360977	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	1q44		rs4335411-A	0.762078	2E-14		0.021526791	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	1q44		rs4335411-A	0.762189	2E-9		0.016604863	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	1q44		rs4335411-A	0.76216	5E-10		0.017219083	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	1q44	intergenic	rs4335411-G	0.237841	8E-13		0.019752035	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	1q44		rs4335411-A	0.762115	4E-15		0.021569675	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	1q44		rs4335411-A	0.762178	1E-11		0.0180127	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	1q44	NR	rs4335411-A	0.762614	5E-12		0.016513	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	1q44	NR	rs4335411-A	0.762473	6E-13		0.017413	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	1q44		rs4335411-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2486	chr1	249191705	249191706	rs4335411	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	1q44	PGBD2	rs4335411-A	0.73729	4E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [43421991] (imputed)	N
587	chr10	313503	313504	rs4880568	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p15.3	NR	rs4880568-?	NR	6E-6		4.53	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
587	chr10	318075	318076	rs12246027	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10p15.3	DIP2C	rs12246027-A	0.27	1E-10	(X-13548)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
587	chr10	318291	318292	rs11595929	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p15.3		rs11595929-A	0.39	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
587	chr10	388555	388556	rs11814991	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p15.3	DIP2C	rs11814991-G	0.0921437857526332	6E-6	(G_Coprococcus_HB)	0.563562	[0.32-0.81] unit decrease	Illumina [7711310] (imputed)	N
588	chr10	424144	424145	rs77829203	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	10p15.3	NR	rs77829203-A	0.038	6E-6		0.0439527	[0.025-0.063] unit decrease	Affymetrix [up to 6544775] (imputed)	N
588	chr10	468182	468183	rs12254690	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p15.3	DIP2C	rs12254690-?		9E-7				Illumina [4322238] (imputed)	N
588	chr10	480773	480774	rs74509340	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	10p15.3	DIP2C	rs74509340-T	NR	8E-7		4.936	NR z score increase	Illumina [7839440] (imputed)	N
589	chr10	526772	526773	rs7096725	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p15.3	NR	rs7096725-?	NR	7E-9				Affymetrix [NR]	N
589	chr10	566378	566379	rs11252926	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	10p15.3	DIP2C	rs11252926-?	0.64	8E-6		1.3888888	[NR]	Illumina [1882172] (imputed)	N
589	chr10	618684	618685	rs17221323	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	10p15.3	DIP2C	rs17221323-G		1E-7	(AA)			Illumina [NR]	N
589	chr10	620483	620483	rs74806154	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	10p15.3	DIP2C, MIR5699, PRR26, MIR7641-2, ZMYND11	rs74806154-?		8E-8	(additive)	0.138	[0.087-0.189] unit increase	Illumina [1492601] (imputed)	N
589	chr10	620483	620483	rs74806154	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	10p15.3	DIP2C, MIR5699, PRR26, MIR7641-2, ZMYND11	rs74806154-?		2E-7	(dominant)	0.172	[0.056-0.288] unit increase	Illumina [1492601] (imputed)	N
590	chr10	695900	695901	rs117446301	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10p15.3		rs117446301-A	NR	4E-6		4.409	[2.57-6.25] unit increase	Illumina [NR] (imputed)	N
590	chr10	709839	709840	rs45473196	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p15.3	DIP2C, PRR26	rs45473196-?		6E-6				Illumina [4322238] (imputed)	N
590	chr10	759267	759268	rs7916968	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p15.3	intergenic	rs7916968-G	0.09	7E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
590	chr10	759558	759559	rs11253338	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	10p15.3	NR	rs11253338-T	0.184	8E-9		0.2846	[0.19-0.38] unit increase	Affymetrix, Illumina [7568033] (imputed)	N
590	chr10	771531	771532	rs877282	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	10p15.3	DIP2C	rs877282-?	NR	5E-8	(Obese)			Illumina [~ 550000]	N
590	chr10	772557	772558	rs2766012	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	10p15.3	RP11-164C1.2	rs2766012-G	0.83	3E-6		0.68	[0.39-0.97] unit increase	Illumina [5833901] (imputed)	N
590	chr10	776149	776150	rs1750785	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	10p15.3		rs1750785-A	0.2638	4E-9		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
590	chr10	781517	781518	rs77415312	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10p15.3	NR	rs77415312-G	0.382	4E-6		0.204093	[0.12-0.29] unit decrease	Illumina [~ 6600000] (imputed)	N
591	chr10	804314	804315	rs497338	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10p15.3	DIP2C, LARP4B	rs497338-T	0.2881	2E-10		1.0274706		Affymetrix [11880941] (imputed)	N
591	chr10	824776	824777	rs7082617	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	10p15.3	NR	rs7082617-?	NR	2E-6		1.2843566		Affymetrix [8183964] (imputed)	N
591	chr10	826768	826769	rs145538661	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	10p15.3	NR	rs145538661-?	NR	9E-6		0.0547	[0.031-0.079] unit increase	Illumina [at least 560000] (imputed)	N
591	chr10	837406	837407	rs1555895	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	10p15.3	intergenic	rs1555895-?		3E-6	(overall survival)	2.94	[1.85-4.55]	Illumina [729737]	N
591	chr10	838635	838636	rs12781100	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10p15.3	NR	rs12781100-T	NR	3E-14		1.079	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
591	chr10	854691	854691	rs141536087	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	10p15.3	LARP4B	rs141536087-GCGCA	NR	4E-6		1.13	[NR]	Illumina [20370935] (imputed)	N
591	chr10	854691	854691	rs141536087	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	10p15.3	LARP4B	rs141536087-GCGCA	NR	5E-6		1.09	[NR]	Illumina [20370935] (imputed)	N
591	chr10	854691	854691	rs141536087	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10p15.3	LARP4B	rs141536087-GCGCA	0.15	9E-13		1.08	[1.06-1.11]	Illumina [20370935] (imputed)	N
591	chr10	858021	858022	rs9124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10p15.3	LARP4B	rs9124-T	0.267673	5E-9		0.014733103	[0.0098-0.0197] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr10	899070	899071	rs80282103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10p15.3		rs80282103-T	NR	1E-51		0.0444	[0.039-0.05] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
591	chr10	899070	899071	rs80282103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10p15.3		rs80282103-T	NR	2E-17		0.0296	[0.023-0.036] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
591	chr10	899070	899071	rs80282103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p15.3	NR	rs80282103-T	0.083778	1E-10		0.021757	[0.015-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
591	chr10	899070	899071	rs80282103	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	10p15.3	LARP4B	rs80282103-A	0.882	2E-21		0.95	[0.75-1.15] unit increase	Affymetrix [NR] (imputed)	N
591	chr10	899070	899071	rs80282103	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10p15.3	LARP4B	rs80282103-A	0.9158	3E-37	(EA)	0.0081	[0.0069-0.0093] unit increase	Affymetrix [NR] (imputed)	N
591	chr10	899070	899071	rs80282103	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10p15.3	LARP4B	rs80282103-A	0.914	9E-38		0.0078	[0.0066-0.009] unit increase	Affymetrix [NR] (imputed)	N
591	chr10	899070	899071	rs80282103	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10p15.3	LARP4B	rs80282103-A	0.9143	3E-68		0.0078	[0.0066-0.009] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
591	chr10	899070	899071	rs80282103	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10p15.3	LARP4B	rs80282103-A	0.9158	1E-57		0.0081	[0.0069-0.0093] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
591	chr10	899070	899071	rs80282103	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	10p15.3	LARP4B	rs80282103-A	0.9196	5E-6		0.0059	[0.0034-0.0084] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
591	chr10	899070	899071	rs80282103	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	10p15.3	LARP4B	rs80282103-T	0.09	1E-10		1.0967317	[1.07-1.13]	Affymetrix, Illumina [9585923] (imputed)	N
591	chr10	899070	899071	rs80282103	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10p15.3	LARP4B	rs80282103-A	0.9143	1E-6		0.0061	[0.0037-0.0085] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
591	chr10	899070	899071	rs80282103	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10p15.3	LARP4B, IDI2, WDR37	rs80282103-T	0.0871	6E-24		10.096	NR z score decrease	Illumina [26237160] (imputed)	N
591	chr10	899070	899071	rs80282103	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10p15.3	WDR37	rs80282103-T	0.08	2E-18		0.615	[0.31-0.92] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
591	chr10	899070	899071	rs80282103	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		10p15.3	WDR37	rs80282103-A	NR	1E-11		0.0123	[0.009-0.0156] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
591	chr10	899302	899303	rs112889159	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	10p15.3	LARP4B	rs112889159-T	0.01	7E-7		8.161	[3.564-18.69]	Illumina [7585874] (imputed)	N
592	chr10	925447	925447	rs78017654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	10p15.3		rs78017654-A	0.913444	2E-9		0.0386024	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
592	chr10	952522	952523	rs7908590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p15.3		rs7908590-G	NR	1E-8		0.0219	[0.014-0.029] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
592	chr10	952522	952523	rs7908590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p15.3		rs7908590-?	NR	1E-10				NR [~ 8900000] (imputed)	N
592	chr10	954275	954276	rs4881540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10p15.3	NR	rs4881540-T	NR	3E-9		0.0211	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr10	954275	954276	rs4881540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs4881540-T	NR	3E-34		0.0432	[0.036-0.05] unit increase	Affymetrix [9000000] (imputed)	N
592	chr10	954275	954276	rs4881540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10p15.3	NR	rs4881540-T	NR	2E-23		0.0354	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr10	954275	954276	rs4881540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs4881540-T	NR	8E-35		0.0437	[0.037-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr10	955030	955031	rs7070876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10p15.3		rs7070876-G	NR	3E-26		0.0263	[0.021-0.031] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
592	chr10	959110	959111	rs12264390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p15.3	LARP4B	rs12264390-C	0.2388	7E-29		0.04659671	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	960760	960761	rs12762973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.3	NR	rs12762973-G	0.195475	4E-81				Affymetrix, Illumina [19905671] (imputed)	N
592	chr10	960760	960761	rs12762973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	10p15.3	LARP4B	rs12762973-G	0.2376	1E-20		0.03820732	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	960760	960761	rs12762973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	10p15.3	LARP4B	rs12762973-G	0.2377	3E-18		0.03549908	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	960760	960761	rs12762973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	10p15.3	LARP4B	rs12762973-G	0.2377	2E-15		0.03260451	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	964831	964832	rs11253511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10p15.3		rs11253511-C	0.761	5E-26				Affymetrix [10369434] (imputed)	N
592	chr10	964831	964832	rs11253511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10p15.3	LARP4B	rs11253511-T	0.238093	1E-82		0.05039543	[0.045-0.056] unit increase	Affymetrix [93095623] (imputed)	N
592	chr10	964831	964832	rs11253511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10p15.3	LARP4B	rs11253511-T	0.238091	5E-89		0.052335728	[0.047-0.057] unit increase	Affymetrix [93095623] (imputed)	N
592	chr10	964831	964832	rs11253511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p15.3		rs11253511-?	NR	9E-44				NR [~ 8900000] (imputed)	N
592	chr10	969376	969377	rs12259338	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10p15.3	LARP4B	rs12259338-T	0.2385	7E-20		0.03822696	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr10	974869	974870	rs1539174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.3	NR	rs1539174-G	0.198174	1E-58				Affymetrix, Illumina [19872809] (imputed)	N
592	chr10	974869	974870	rs1539174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p15.3	NR	rs1539174-G	0.23738	1E-59		0.038017	[0.033-0.043] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
592	chr10	975651	975652	rs117724916	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LARP4B	rs117724916-?	NR	6E-11	(male)	3.97238	[NR] unit decrease	Affymetrix [NR] (imputed)	N
592	chr10	989436	989437	rs35306767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p15.3		rs35306767-T	NR	1E-27		0.0232	[0.019-0.027] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
592	chr10	989436	989437	rs35306767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10p15.3	RP11-363N22.2	rs35306767-T	0.2145	3E-14		0.03304466	[0.025-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	991207	991208	rs12354914	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p15.3		rs12354914-C	0.785	5E-18				Affymetrix [10369434] (imputed)	N
592	chr10	991207	991208	rs12354914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p15.3	RP11-363N22.2	rs12354914-T	0.214167	4E-42		0.03657678	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
592	chr10	991207	991208	rs12354914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p15.3	RP11-363N22.2	rs12354914-T	0.214168	2E-50		0.040113613	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
592	chr10	993728	993729	rs11253530	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10p15.3	intergenic	rs11253530-C	0.2145	5E-18		0.0374243	[0.029-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	993728	993729	rs11253530	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p15.3	intergenic	rs11253530-C	0.2145	3E-21		0.04099461	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr10	1037736	1037737	rs35249079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10p15.3	NR	rs35249079-T	0.530644	1E-15		0.0223792	[0.017-0.028] unit increase	Affymetrix [16580851] (imputed)	N
593	chr10	1052492	1052493	rs532096508	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p15.3	GTPBP4	rs532096508-A	0.0021	8E-6		0.853	[0.48-1.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
593	chr10	1065709	1065710	rs1044261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10p15.3	NR	rs1044261-T	NR	1E-9		0.0277	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
593	chr10	1065709	1065710	rs1044261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs1044261-T	NR	2E-32		0.0537	[0.045-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr10	1065709	1065710	rs1044261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10p15.3	NR	rs1044261-T	NR	9E-28		0.0496	[0.041-0.058] unit increase	Affymetrix [9000000] (imputed)	N
593	chr10	1065709	1065710	rs1044261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs1044261-T	NR	3E-33		0.0545	[0.046-0.063] unit increase	Affymetrix [9000000] (imputed)	N
593	chr10	1065709	1065710	rs1044261	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	10p15.3	WDR37	rs1044261-T	0.08	1E-11	(EA)	0.0113	[0.0082-0.0144] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
593	chr10	1065709	1065710	rs1044261	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	10p15.3	WDR37	rs1044261-T	0.08	4E-7		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2500000] (imputed)	N
593	chr10	1078781	1078782	rs12762955	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	10p15.3	C10orf110	rs12762955-C	NR	8E-6	(EA)	1.17	[0.62-1.72] unit decrease	Affymetrix [~ 2300000] (imputed)	N
593	chr10	1156164	1156165	rs10794720	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	10p15.3	WDR37	rs10794720-T	NR	5E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
593	chr10	1156164	1156165	rs10794720	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	10p15.3	WDR37	rs10794720-T	0.08	1E-8	(eGFRcrea)	0.01	[0.010-0.018] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
593	chr10	1173764	1173765	rs11250278	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p15.3	NR	rs11250278-A	0.055	6E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
594	chr10	1229914	1229915	rs74469790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs74469790-A	NR	7E-13		0.0347	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr10	1229914	1229915	rs74469790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10p15.3	NR	rs74469790-A	NR	7E-13		0.0348	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
594	chr10	1229914	1229915	rs74469790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p15.3	NR	rs74469790-A	NR	3E-13		0.0354	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
594	chr10	1232228	1232229	rs145022376	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10p15.3		rs145022376-?	NR	1E-6	(clearcell)	4.1		Illumina [11595112] (imputed)	N
594	chr10	1246882	1246883	rs4880487	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p15.3	intergenic	rs4880487-T	0.25	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
594	chr10	1281544	1281545	rs371550299	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10p15.3		rs371550299-C	0.0012971	6E-6		0.42879	[0.24-0.61] unit increase	Affymetrix [15580782] (imputed)	N
594	chr10	1283599	1283600	rs117636134	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	10p15.3	NR	rs117636134-C	0.02	8E-7	(EA)	1.81	[1.43-2.30]	Affymetrix [7469170] (imputed)	N
595	chr10	1343016	1343017	rs11599315	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	10p15.3	WDR37	rs11599315-T	0.37	5E-6	(AA-glucose response)	3.88	[2.21-5.55] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
595	chr10	1355536	1355537	rs143843582	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	10p15.3	ADARB2	rs143843582-T	0.019	4E-6		2.25	[1.59-3.18]	Illumina [9327222] (imputed)	N
595	chr10	1368695	1368696	rs11250416	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p15.3	NR	rs11250416-?	NR	5E-6				Affymetrix [NR]	N
595	chr10	1406363	1406364	rs11250464	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	10p15.3	ADARB2	rs11250464-?	0.18	6E-6				Affymetrix, Illumina [1348798]	N
596	chr10	1452785	1452786	rs17293817	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p15.3	NR	rs17293817-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
596	chr10	1471764	1471765	rs2820651	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	10p15.3	intergenic	rs2820651-A	0.1	4E-7		1.22	[1.13-1.31]	Affymetrix, Illumina [~ 2300000] (imputed)	N
596	chr10	1484721	1484722	rs3898609	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	10p15.3	NR	rs3898609-?	NR	9E-6		0.0259	[0.015-0.037] unit increase	Illumina [at least 560000] (imputed)	N
597	chr10	1579777	1579778	rs11250601	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10p15.3	NR	rs11250601-C	NR	8E-6	(GEE model)	0.82215	[0.46-1.18] unit decrease	NR [NR] (imputed)	N
597	chr10	1605997	1605998	rs10903488	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	10p15.3	ADARB2	rs10903488-?		3E-6		4.58	[2.7-6.46] unit increase	Illumina [5908215] (imputed)	N
597	chr10	1628904	1628905	rs2813392	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	10p15.3		rs2813392-?	NR	8E-7				Illumina [3311160] (imputed)	N
597	chr10	1630820	1630821	rs2999399	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10p15.3	ADARB2	rs2999399-T	0.76	6E-6	(qualitative)	1.47	[NR]	Illumina [499578]	N
597	chr10	1637135	1637136	rs6560743	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	10p15.3	ADARB2	rs6560743-?	NR	8E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
597	chr10	1649761	1649762	rs10903510	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	ADARB2	rs10903510-?	NR	3E-6	(ureidopropionic acid)	0.26979393	[0.16-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
597	chr10	1655793	1655794	rs7087342	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	10p15.3	ADARB2	rs7087342-A	0.011	5E-8	(Dihydropyridine derivatives [C08CA])	5.39		Illumina [16500000] (imputed)	N
597	chr10	1676530	1676531	rs6560749	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p15.3	ADARB2	rs6560749-T	0.14	8E-6	(% body fat)	0.34	[NR] % decrease	Affymetrix [408775]	N
597	chr10	1676530	1676531	rs6560749	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p15.3	ADARB2	rs6560749-T	0.14	2E-6	(BMI)	0.32	[NR] kg/m2 decrease	Affymetrix [408775]	N
597	chr10	1702580	1702581	rs11250714	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	10p15.3	NR	rs11250714-?	NR	6E-6	(order_Rhizobiales)	0.795163	[0.38-1.21] unit decrease	Affymetrix [210924]	N
598	chr10	1710483	1710484	rs117802009	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	10p15.3		rs117802009-C	0.01692	8E-6		2.007	[1.47699999999999-2.728]	Affymetrix [7975321] (imputed)	N
598	chr10	1717506	1717507	rs10903540	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	10p15.3	NR	rs10903540-G		4E-6		0.1581	[0.091-0.225] SD units increase	NR [10700000] (imputed)	N
598	chr10	1719748	1719749	rs61834216	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	10p15.3	NR	rs61834216-?		3E-6		0.02	[0.011-0.029] unit increase	Illumina [7533529] (imputed)	N
598	chr10	1729025	1729026	rs7896371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p15.3		rs7896371-T	NR	2E-11		0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
598	chr10	1729025	1729026	rs7896371	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	10p15.3		rs7896371-T	NR	2E-6		0.0037629	[0.0022-0.0053] years increase	NR [7400000] (imputed)	N
598	chr10	1729025	1729026	rs7896371	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	10p15.3		rs7896371-T	NR	4E-10		0.020404965	[0.014-0.027] years increase	NR [7400000] (imputed)	N
598	chr10	1729025	1729026	rs7896371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.3		rs7896371-?	NR	2E-10				NR [~ 8900000] (imputed)	N
598	chr10	1731870	1731871	rs1874984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10p15.3		rs1874984-?	NR	2E-22				NR [~ 8900000] (imputed)	N
598	chr10	1731870	1731871	rs1874984	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	10p15.3	ADARB2	rs1874984-C	0.47	2E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
598	chr10	1739610	1739611	rs1909436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p15.3	NR	rs1909436-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
598	chr10	1751709	1751710	rs17221972	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	10p15.3	ADARB2	rs17221972-A	0.4074	5E-6		0.041	[0.023-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
598	chr10	1769881	1769883	rs150155092	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10p15.3	ADARB2	rs150155092-?		2E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
598	chr10	1769881	1769883	rs150155092	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10p15.3	ADARB2	rs150155092-?	0.0132	7E-9	(EA)	18.32	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
598	chr10	1795193	1795194	rs997934	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	10p15.3	NR	rs997934-T	0.3795	5E-13		1.016	[1.012-1.021]	NR [8098588] (imputed)	N
598	chr10	1824337	1824338	rs17156908	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	10p15.3	intergenic	rs17156908-T	0.19	5E-6	(female)	0.12	[0.069-0.171] unit increase	Illumina [6380737] (imputed)	N
599	chr10	1841343	1841344	rs11250792	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p15.3	NR	rs11250792-A	0.166	5E-6	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
599	chr10	1872349	1872350	rs7078966	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	C10orf109	rs7078966-?	NR	4E-6	(malate)	0.5991253	[0.34-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
599	chr10	1897977	1897978	rs12360000	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	10p15.3	LOC100129465	rs12360000-A		6E-6		0.14	[0.08-0.20] unit increase	Affymetrix [~ 2500000] (imputed)	N
600	chr10	1984899	1984900	rs10903605	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	10p15.3	Intergenic	rs10903605-A	0.83835	5E-6		0.188164	[0.11-0.27] unit increase	Illumina [6969139] (imputed)	N
600	chr10	2057657	2057658	rs11250991	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p15.3		rs11250991-G	0.766	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
600	chr10	2083537	2083538	rs75697268	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	10p15.3	NR	rs75697268-C	NR	7E-6		0.4675	[0.26-0.67] SD units increase	NR [10700000] (imputed)	N
601	chr10	2176193	2176194	rs35017521	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	1,380 non-Hispanic White ancestry individuals	2,389 non-Hispanic White ancestry individuals	10p15.3		rs35017521-T	NR	8E-7		1.4	[1.2-1.6]	Illumina [5405435] (imputed)	N
601	chr10	2185513	2185514	rs7089368	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10p15.3	NR	rs7089368-T	0.199	2E-6	(Males)	0.381088	[0.23-0.54] unit decrease	Illumina [~ 6600000] (imputed)	N
601	chr10	2191096	2191097	rs140531725	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10p15.3	NR	rs140531725-A	NR	7E-6	(male)	0.561	[0.32-0.81] unit decrease	Illumina [11133794] (imputed)	N
601	chr10	2215511	2215512	rs11596966	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p15.3	NR	rs11596966-?	NR	6E-6	(AA)	78.49	[75.39-81.59]	Illumina [905956]	N
601	chr10	2219929	2219930	rs12781711	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcaceae UCG013 id.11370)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	10p15.3		rs12781711-C	NR	3E-8		5.569616	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
602	chr10	2261988	2261989	rs11251103	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	C10orf109	rs11251103-?	NR	7E-6	(hydroxyproline)	0.1798033	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
602	chr10	2357483	2357484	rs5020023	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p15.3	NR	rs5020023-?		4E-6				Illumina [4322238] (imputed)	N
602	chr10	2357701	2357702	rs12412942	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	10p15.3	LINC00701	rs12412942-A	NR	8E-7		1.2820514	[NR]	Illumina [up to 9792010] (imputed)	N
603	chr10	2373977	2373978	rs1570959	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	10p15.3	RP11-311B18.1	rs1570959-A	0.71	6E-6		0.84	[0.49-1.19] g/day increase	Affymetrix [10353649] (imputed)	N
603	chr10	2390401	2390402	rs12763930	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	10p15.3	ADARB2, PFKP	rs12763930-A	0.031	7E-7		0.75	[0.46-1.04] unit decrease	Illumina [7938386] (imputed)	N
603	chr10	2424555	2424556	rs12571964	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.3	intergenic	rs12571964-A	0.21	9E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
603	chr10	2427842	2427843	rs17158233	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	10p15.3	Intergenic	rs17158233-A	NR	4E-7	(EA)	3.68	[2.23-6.09]	Illumina [629283] (imputed)	N
603	chr10	2468357	2468358	rs11251234	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	10p15.3		rs11251234-C	0.15495	1E-6		0.045032	[0.027-0.063] unit decrease	Affymetrix [15580782] (imputed)	N
604	chr10	2491424	2491425	rs10903772	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p15.3	Intergenic	rs10903772-A	0.4314	1E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr10	2530582	2530583	rs2458713	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		10p15.3	intergenic	rs2458713-A	0.217	4E-6		0.422	[0.25-0.6] unit increase	Illumina [640625] (imputed)	N
604	chr10	2531998	2531999	rs754149	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	10p15.3		rs754149-G	NR	2E-6		0.71	[0.62-0.82]	Illumina [7582931] (imputed)	N
604	chr10	2532018	2532019	rs729397	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	10p15.3	LOC727878, LOC728209, LOC441546	rs729397-C	0.26	8E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
604	chr10	2542388	2542389	rs9329289	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	10p15.3	intergenic	rs9329289-?		6E-6	(PC1)	0.0999	[NR] unit increase	Illumina [4167292] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	3E-9	(IGHG4)	0.08256	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	3E-9	(COTL1)	0.08034	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	2E-9	(AKR1B1)	0.02376	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	2E-8	(PYCARD)	0.01401	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	2E-8	(LDHB)	0.1033	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2561339	2561340	rs117723948	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs117723948-G	0.02091	1E-8	(ASAH1)	0.02318	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2565731	2565732	rs71502208	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Systolic blood pressure	815 African ancestry early adolescents	NA	10p15.3	LINC00701	rs71502208-A	0.22	9E-7		2.51	[-7.388-12.408] unit increase	Illumina [20074711] (imputed)	N
604	chr10	2571427	2571428	rs11251308	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.3	NR	rs11251308-A	0.02265	6E-11	(TXN2)	0.01468	NR unit increase	Illumina [1671387] (imputed)	N
604	chr10	2603226	2603227	rs4489654	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	PITRM1	rs4489654-?	NR	7E-6	(glucuronate)	0.45340115	[0.26-0.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
604	chr10	2606975	2606976	rs78245978	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	10p15.3	intergenic	rs78245978-T	NR	6E-6	(males)	0.43	[0.25-0.61] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
605	chr10	2666858	2666859	rs7084503	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10p15.3	PFKP	rs7084503-T	0.491843	5E-20		0.012897	[0.01-0.016] unit increase	Affymetrix [12370749]	N
606	chr10	2759795	2759796	rs61835453	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10p15.3		rs61835453-?	NR	2E-8				Affymetrix [NR] (imputed)	N
606	chr10	2759795	2759796	rs61835453	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	10p15.3	NR	rs61835453-C	0.06	8E-7		2.173913	[1.86-2.49]	NR [up to 6398204] (imputed)	N
606	chr10	2776697	2776698	rs79619559	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p15.3	NR	rs79619559-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
606	chr10	2782802	2782803	rs1537617	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	10p15.3	NR	rs1537617-A	0.84	2E-6		1.17	[1.10-1.25]	Illumina [~ 1113287] (imputed)	N
606	chr10	2789593	2789594	rs9329300	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	10p15.3	PFKP	rs9329300-?	0.19	2E-9		3.1004	[2.25-4.27]	Illumina [859311]	N
606	chr10	2858709	2858710	rs61836582	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10p15.3		rs61836582-?	NR	5E-8				Affymetrix [NR] (imputed)	N
606	chr10	2861077	2861078	rs11595500	26015512	Komatsu M	2015-05-26	Clin Cancer Res	Pharmacoethnicity in Paclitaxel-Induced Sensory Peripheral Neuropathy.	Paclitaxel-induced cytotoxicity	57 Japanese ancestry lymphoblastoid cell lines, 59 Han Chinese ancestry lymphoblastoid cell lines	77 European ancestry lymphoblastoid cell lines, 87 Yoruban ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines	10p15.3	intergenic	rs11595500-?	NR	4E-8		0.212	[NR] unit decrease	NR [~ 4600000] (imputed)	N
606	chr10	2880120	2880121	rs12220754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	PITRM1	rs12220754-?	NR	8E-6	(PC 36:2)	0.3189557	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
606	chr10	2880120	2880121	rs12220754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	PITRM1	rs12220754-?	NR	5E-6	(PC 34:3)	0.32263407	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
606	chr10	2880120	2880121	rs12220754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	PITRM1	rs12220754-?	NR	5E-6	(PC 34:2)	0.32761315	[0.19-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr10	2891248	2891249	rs4880580	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.3	PITRM1	rs4880580-?	NR	8E-6	(PC 32:2)	0.342298	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
607	chr10	2965229	2965230	rs10794972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	10p15.3		rs10794972-A	0.642748	8E-9		0.0249103	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
608	chr10	3105257	3105261	rs10581924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10p15.2	PFKP	rs10581924-C	0.821018	1E-10		0.019165423	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr10	3112620	3112621	rs11251693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	10p15.2		rs11251693-A	0.877837	2E-12		0.0445467	[0.032-0.057] unit decrease	NR [11722792] (imputed)	N
608	chr10	3132944	3132945	rs11592061	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	10p15.2		rs11592061-?	NR	1E-5				Illumina [1365315]	N
608	chr10	3132993	3132994	rs79441543	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (percentage of high attenuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	3,013 European ancestry individuals	10p15.2	PFKP	rs79441543-C	0.048	3E-10	(Chinese)	0.615	[0.42-0.81] unit increase	Affymetrix [at least 897981] (imputed)	N
608	chr10	3137444	3137445	rs2388594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10p15.2	PFKP	rs2388594-A	0.394093	6E-12		0.016034387	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr10	3137444	3137445	rs2388594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.2	NR	rs2388594-G	0.607058	4E-17				Affymetrix, Illumina [17210439] (imputed)	N
608	chr10	3137444	3137445	rs2388594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10p15.2	NR	rs2388594-G	0.606648	2E-19		0.017731	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
608	chr10	3137471	3137472	rs7076989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10p15.2		rs7076989-G	NR	7E-9		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
608	chr10	3137471	3137472	rs7076989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10p15.2	NR	rs7076989-G	NR	3E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
608	chr10	3138008	3138009	rs2388595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	10p15.2		rs2388595-C	0.607291	3E-87		0.0839996	[0.076-0.092] unit increase	NR [11722792] (imputed)	N
608	chr10	3139007	3139008	rs61835136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	10p15.2		rs61835136-T	0.632285	8E-40		0.0584858	[0.05-0.067] unit decrease	NR [11722792] (imputed)	N
608	chr10	3139187	3139188	rs566372607	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	10p15.2		rs566372607-G	0.611932	1E-27		0.0463861	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
609	chr10	3155172	3155173	rs7896691	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	10p15.2	PFKP	rs7896691-C	0.10	2E-6		0.17	[0.10-0.24] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
609	chr10	3158472	3158473	rs77783563	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	10p15.2	NR	rs77783563-A	0.02568	4E-6		0.4409	[0.25-0.63] unit decrease	Illumina [10677593] (imputed)	N
609	chr10	3189379	3189380	rs3740607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.2		rs3740607-?	NR	1E-9				NR [~ 8900000] (imputed)	N
609	chr10	3244317	3244318	rs12241029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p15.2	NR	rs12241029-A	0.449054	1E-10		0.012287	[0.0086-0.016] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
609	chr10	3245547	3245548	rs7916396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p15.2		rs7916396-C	0.436898	6E-9		0.012948712	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
609	chr10	3245547	3245548	rs7916396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p15.2		rs7916396-C	0.436888	1E-9		0.013519974	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
610	chr10	3277668	3277669	rs371738611	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10p15.2		rs371738611-?	NR	4E-10				NR [9705931] (imputed)	N
610	chr10	3279573	3279574	rs4291581	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p15.2		rs4291581-T	0.48	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
610	chr10	3284006	3284007	rs2764980	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	10p15.2	PITRM1	rs2764980-A	0.51	9E-6				Perlegen [378332]	N
610	chr10	3296548	3296549	rs148405458	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10p15.2	NR	rs148405458-C	NR	4E-8	(GEE model)	1.0014	[0.64-1.36] unit decrease	NR [NR] (imputed)	N
610	chr10	3328317	3328318	rs533883198	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	10p15.2	intergenic	rs533883198-A	0.0027	4E-8		0.6832422	[0.44-0.93] mmol/L increase	Illumina [24111857] (imputed)	N
610	chr10	3331871	3331872	rs79209987	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	10p15.2	NR	rs79209987-G	0.05685	3E-6		0.3078	[0.18-0.44] unit decrease	Illumina [10677593] (imputed)	N
610	chr10	3342773	3342774	rs4881147	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	10p15.2	PFKP, PITRM1, PITRM1-AS1	rs4881147-?	NR	3E-6				Illumina [9143600] (imputed)	N
610	chr10	3390574	3390575	rs7079506	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	10p15.2	NR	rs7079506-?	NR	8E-9		5.776	NR z score increase	Illumina [at least 830937] (imputed)	N
611	chr10	3408946	3408947	rs17135159	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	10p15.2	BC037918	rs17135159-A	0.80	2E-6		0.107	[0.062-0.152] unit increase	Illumina [~ 2400000] (imputed)	N
611	chr10	3418123	3418124	rs1570854	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	10p15.2	intergenic	rs1570854-T	NR	7E-6		0.079	[0.044-0.114] unit increase	Illumina [628922]	N
611	chr10	3500808	3500809	rs61830526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.2		rs61830526-?	NR	4E-8				NR [~ 8900000] (imputed)	N
611	chr10	3516104	3516105	rs2165468	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	10p15.2	intergenic	rs2165468-?	NR	1E-6	(FNBMDm)			Affymetrix [70897]	N
611	chr10	3523622	3523623	rs7088080	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	10p15.2	Intergenic	rs7088080-?	NR	3E-7		1.0752687	[1.05-1.1]	Affymetrix, Illumina [39235000] (imputed)	N
611	chr10	3538793	3538794	rs7092929	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10p15.2	KLF6	rs7092929-A	0.26	3E-7	(AA)	0.21	[0.13-0.29] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
612	chr10	3569416	3569417	rs2066107	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10p15.2	NR	rs2066107-T	0.39	5E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix [2446094] (imputed)	N
612	chr10	3569416	3569417	rs2066107	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10p15.2	NR	rs2066107-T	0.39	5E-8				Affymetrix [2446094] (imputed)	N
612	chr10	3581220	3581221	rs10795055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p15.2	RP11-482E14.2	rs10795055-A	NR	1E-10		0.0186166	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
612	chr10	3581220	3581221	rs10795055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p15.2	RP11-482E14.2	rs10795055-A	NR	1E-10		0.0186901	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
612	chr10	3581220	3581221	rs10795055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10p15.2	RP11-482E14.2	rs10795055-A	NR	2E-8		0.0164856	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
612	chr10	3581220	3581221	rs10795055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10p15.2	RP11-482E14.2	rs10795055-A	NR	7E-11		0.0190821	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
612	chr10	3581220	3581221	rs10795055	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p15.2	NR	rs10795055-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
612	chr10	3581220	3581221	rs10795055	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p15.2	NR	rs10795055-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
612	chr10	3581220	3581221	rs10795055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p15.2		rs10795055-?	NR	6E-10				NR [~ 8900000] (imputed)	N
612	chr10	3581220	3581221	rs10795055	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10p15.2	NR	rs10795055-A	0.3934	5E-9		0.0106	[0.0071-0.0141] unit increase	NR [~ 27400000] (imputed)	N
612	chr10	3596525	3596526	rs7086377	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10p15.2	NR	rs7086377-T	0.3952	7E-11		0.0119	[0.0084-0.0154] unit increase	NR [~ 27400000] (imputed)	N
612	chr10	3596946	3596947	rs11251942	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	10p15.2	NR	rs11251942-?	NR	5E-7		1.1186024	[1.07-1.17]	Affymetrix, Illumina [~ 10400000] (imputed)	N
612	chr10	3622721	3622722	rs143442796	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-448 abundance in stool	5,959 Finnish ancestry individuals	NA	10p15.2		rs143442796-T	0.0144806	3E-8		0.348283	[0.23-0.47] unit increase	Illumina [7980478] (imputed)	N
612	chr10	3629907	3629908	rs488535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p15.2		rs488535-?	NR	3E-16				NR [~ 8900000] (imputed)	N
612	chr10	3629907	3629908	rs488535	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p15.2		rs488535-?	NR	6E-15		0.0181615	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
612	chr10	3642554	3642555	rs7901181	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10p15.2	BC037918	rs7901181-?	NR	7E-6		0.138	[0.05-0.226] unit decrease	Illumina [at least 13000000] (imputed)	N
612	chr10	3658918	3658919	rs705469	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10p15.2	intergenic	rs705469-?	NR	7E-6				NR [~ 2000000]	N
612	chr10	3667725	3667726	rs705471	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10p15.2	intergenic	rs705471-?	NR	7E-6				NR [~ 2000000]	N
613	chr10	3684147	3684148	rs79079890	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	10p15.2	LOC105376360	rs79079890-G	0.032	3E-7		3.2	[2.05-4.99]	Illumina [11083029] (imputed)	N
613	chr10	3684210	3684211	rs59679352	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p15.2	NR	rs59679352-?		4E-6				Illumina [4322238] (imputed)	N
613	chr10	3707314	3707315	rs7912035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p15.2		rs7912035-C	NR	2E-20		0.0218	[0.017-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
613	chr10	3707314	3707315	rs7912035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10p15.2		rs7912035-C	0.459626	2E-8		0.0188125	[0.012-0.025] unit increase	Illumina [13478928] (imputed)	N
613	chr10	3707314	3707315	rs7912035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p15.2		rs7912035-C	0.857803	5E-13		0.02329521	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
613	chr10	3707314	3707315	rs7912035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p15.2	NR	rs7912035-C	0.857921	2E-14		0.020124	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
613	chr10	3707747	3707748	rs7912685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.2	NR	rs7912685-C	0.774573	5E-20				Affymetrix, Illumina [24588908] (imputed)	N
613	chr10	3710886	3710887	rs10795061	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10p15.2	NR	rs10795061-T	0.4575	5E-6		0.012	[0.0068-0.0172] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
613	chr10	3711121	3711122	rs10508258	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10p15.2	NR	rs10508258-T	0.4584	1E-6		0.014245766	[0.0084-0.02] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
613	chr10	3744022	3744022	rs560381515	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p15.2		rs560381515-?	NR	6E-19		0.0215035	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
613	chr10	3744574	3744575	rs2388854	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p15.2	LOC105376360	rs2388854-G	0.734922	3E-14		0.0158718	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
613	chr10	3761110	3761111	rs17325819	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	10p15.2	NR	rs17325819-A	0.2344	6E-6		0.0185	[0.01-0.027] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p15.2	RP11-184A2.3	rs10904089-T	0.496234	3E-13		0.01642595	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p15.2	RP11-184A2.3	rs10904089-T	0.496252	2E-11		0.015136455	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.2	NR	rs10904089-T	0.449012	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10p15.2	NR	rs10904089-T	0.493294	1E-14		0.014528	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.2	NR	rs10904089-T	0.450066	8E-12				Affymetrix, Illumina [24558453] (imputed)	N
613	chr10	3791223	3791224	rs10904089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p15.2	NR	rs10904089-T	0.493196	1E-12		0.013316	[0.0096-0.017] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
613	chr10	3792607	3792608	rs2279415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10p15.2	NR	rs2279415-G	0.530573	2E-8		0.0051493	[0.0035-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
613	chr10	3792607	3792608	rs2279415	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10p15.2	NR	rs2279415-G	0.530573	5E-8		0.00538616	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
614	chr10	3804256	3804257	rs10508264	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	10p15.2	LOC100287172	rs10508264-?		2E-6				Illumina [859311]	N
614	chr10	3806077	3806078	rs11252072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p15.2		rs11252072-C	NR	1E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
614	chr10	3812081	3812082	rs12762783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p15.2		rs12762783-?	NR	1E-13				NR [~ 8900000] (imputed)	N
614	chr10	3816179	3816180	rs10795075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.2		rs10795075-?	NR	2E-10				NR [~ 8900000] (imputed)	N
614	chr10	3816179	3816180	rs10795075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p15.2		rs10795075-?	NR	2E-20				NR [~ 8900000] (imputed)	N
614	chr10	3817493	3817494	rs7071909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p15.2	KLF6	rs7071909-T	0.450388	4E-12		0.01539724	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3817560	3817561	rs142798523	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.2	NR	rs142798523-?	NR	1E-10	(IL2RA)	0.82643	[0.57-1.08] unit increase	Illumina [11901634] (imputed)	N
614	chr10	3819713	3819714	rs1043009	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10p15.2	NR	rs1043009-?	NR	2E-9		1.05675	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
614	chr10	3820786	3820787	rs1043003	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p15.2	KLF6	rs1043003-T	0.62095	4E-19		0.0169809	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
614	chr10	3821560	3821561	rs17731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p15.2	KLF6	rs17731-A	0.373883	2E-14		0.017517429	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3821560	3821561	rs17731	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.2	NR	rs17731-A	0.388658	3E-12				Affymetrix, Illumina [23467995] (imputed)	N
614	chr10	3821560	3821561	rs17731	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10p15.2	NR	rs17731-A	0.373507	1E-13		0.014337	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
614	chr10	3821560	3821561	rs17731	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10p15.2	NR	rs17731-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
614	chr10	3823142	3823147	rs68192277	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p15.2		rs68192277-?	NR	1E-14		0.0156648	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
614	chr10	3823142	3823147	rs68192277	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p15.2	KLF6	rs68192277-TAAGAG	0.618121	2E-10		0.0202822	[0.013-0.027] unit increase	NR [17166351] (imputed)	N
614	chr10	3823142	3823147	rs68192277	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p15.2	KLF6	rs68192277-TAAGAG	0.617964	1E-9	(women)	0.0283703	[0.019-0.038] unit increase	NR [17166351] (imputed)	N
614	chr10	3826150	3826151	rs71477837	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10p15.2	NR	rs71477837-G	0.158235	1E-8		0.0239994	[0.016-0.032] unit increase	NR [19129689] (imputed)	N
614	chr10	3829391	3829392	rs138550853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10p15.2	KLF6	rs138550853-A	0.147954	7E-12		0.021586826	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3851366	3851367	rs372193935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p15.1		rs372193935-T	0.023012	2E-15		0.06275206	[0.047-0.078] unit increase	Affymetrix [93095623] (imputed)	N
614	chr10	3852709	3852710	rs548015135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p15.1		rs548015135-C	0.022676	5E-12		0.054623537	[0.039-0.07] unit increase	Affymetrix [93095623] (imputed)	N
614	chr10	3853528	3853529	rs17842280	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p15.1	KLF6	rs17842280-A	0.0633530733624332	2E-6	(F_Rhodospirillaceae_HB)	0.591815	[0.35-0.84] unit decrease	Illumina [7711310] (imputed)	N
614	chr10	3862541	3862542	rs6601764	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10p15.1	NR	rs6601764-C	0.41	9E-6		1.16	[1.01-1.33]	Affymetrix [469557]	N
614	chr10	3886903	3886904	rs61828723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10p15.1		rs61828723-G	NR	1E-15		0.0364	[0.027-0.045] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
614	chr10	3886903	3886904	rs61828723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10p15.1		rs61828723-G	NR	2E-11		0.0305	[0.022-0.039] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p15.1		rs61828723-G	0.076695	6E-12		0.02933962	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p15.1		rs61828723-G	0.076724	3E-40		0.05745781	[0.049-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p15.1		rs61828723-G	0.076683	2E-48		0.06364156	[0.055-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10p15.1		rs61828723-G	0.076681	3E-20		0.0393708	[0.032-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10p15.1		rs61828723-G	0.076676	6E-13		0.030760614	[0.022-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.0627458	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.075637	3E-17		0.030736	[0.024-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.0640224	2E-22				Affymetrix, Illumina [24246363] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.075619	1E-25		0.037533	[0.031-0.045] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.0640907	7E-13				Affymetrix, Illumina [20825802] (imputed)	N
614	chr10	3886903	3886904	rs61828723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10p15.1	NR	rs61828723-G	0.076522	7E-16		0.030288	[0.023-0.038] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
614	chr10	3886903	3886904	rs61828723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10p15.1		rs61828723-?	NR	1E-18				NR [~ 8900000] (imputed)	N
614	chr10	3887161	3887162	rs12411753	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	10p15.1	KLF6, MIR6078	rs12411753-A	0.05	9E-6		1.58		Illumina [8974355] (imputed)	N
614	chr10	3910815	3910816	rs11252145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p15.1		rs11252145-T	NR	3E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
614	chr10	3910815	3910816	rs11252145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p15.1		rs11252145-T	0.492973	4E-10		0.013871484	[0.0095-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
614	chr10	3915479	3915480	rs72771288	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	10p15.1	NR	rs72771288-T	0.006878	2E-7		0.9495	[0.59-1.31] unit increase	Illumina [10677593] (imputed)	N
614	chr10	3918173	3918174	rs10904115	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p15.1	KLF6	rs10904115-T	NR	1E-7		1.0595465	NR	Affymetrix, Illumina [8278136] (imputed)	N
614	chr10	3925728	3925729	rs4242763	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	PITRM1	rs4242763-?	NR	9E-7	(3-methyladipate; pimelate)	0.65088075	[0.39-0.91] unit increase	Affymetrix [at least 2500000] (imputed)	N
615	chr10	4001896	4001897	rs2031573	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		10p15.1	intergenic	rs2031573-?	NR	7E-6				Illumina [~ 2400000] (imputed)	N
615	chr10	4028833	4028834	rs56401617	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs56401617-?	NR	3E-10	(IL2RA)	0.78303	[0.54-1.03] unit increase	Illumina [11901634] (imputed)	N
615	chr10	4031518	4031519	rs4881269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p15.1	Intergenic	rs4881269-A	0.3677	5E-11	(MTAG)	0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
615	chr10	4031518	4031519	rs4881269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p15.1		rs4881269-A	0.3818	4E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
615	chr10	4032379	4032380	rs67630759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p15.1	Intergenic	rs67630759-A	0.4147	1E-13	(MTAG)	0.0099	[0.0074-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
615	chr10	4050002	4050003	rs2031577	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	10p15.1	RP11-433J20.2	rs2031577-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
616	chr10	4065809	4065810	rs11252279	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	10p15.1	MIR6078, LOC101927964	rs11252279-C	0.53	7E-7		0.19	unit increase	Illumina [5600000] (imputed)	N
616	chr10	4065809	4065810	rs11252279	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (global cognition) (slope of z-scores)	1,145 European ancestry individuals	NA	10p15.1	MIR6078, LOC101927964	rs11252279-C	0.53	4E-6				Illumina [5600000] (imputed)	N
616	chr10	4109600	4109601	rs72774769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10p15.1		rs72774769-G	NR	1E-10		0.0271	[0.019-0.035] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
616	chr10	4109600	4109601	rs72774769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10p15.1		rs72774769-G	NR	2E-11		0.0292	[0.021-0.038] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
616	chr10	4119567	4119568	rs11252321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10p15.1		rs11252321-C	NR	4E-8		0.0211	[0.014-0.029] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
616	chr10	4129295	4129296	rs11252331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p15.1	NR	rs11252331-G	0.836619	2E-11		0.016749	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
616	chr10	4137660	4137661	rs10904180	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	10p15.1	intergenic	rs10904180-T	0.82	8E-6		0.026	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr10	4139547	4139547	rs71392427	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	10p15.1	NR	rs71392427-?	NR	2E-6		1.1988671	[1.11-1.29]	Affymetrix, Illumina [~ 10400000] (imputed)	N
616	chr10	4143934	4143935	rs11252344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p15.1		rs11252344-?	NR	7E-11				NR [~ 8900000] (imputed)	N
616	chr10	4151120	4151121	rs10795130	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	10p15.1	intergenic	rs10795130-G	0.13	7E-6		0.103	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
616	chr10	4153697	4153698	rs192361383	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs192361383-?	NR	2E-9	(IL2RA)	1.05372	[0.71-1.4] unit increase	Illumina [11901634] (imputed)	N
616	chr10	4159560	4159561	rs11598350	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p15.1		rs11598350-T	0.7903	3E-11	(conditional-joint)	0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
616	chr10	4172710	4172711	rs10751962	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p15.1	KLF6, LOC338588	rs10751962-C		5E-8		0.219	unit decrease	Affymetrix [at least 2696785] (imputed)	N
617	chr10	4216862	4216863	rs76983293	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	10p15.1	Intergenic	rs76983293-?		2E-6	(female)	0.549	[0.32-0.78] unit increase	NR [~ 5500000] (imputed)	N
617	chr10	4240869	4240870	rs11252394	23508266	Duan QL	2013-03-19	Pharmacogenomics J	A genome-wide association study of bronchodilator response in asthmatics.	Asthma (bronchodilator response)	Up to 403 European ancestry asthmatic children and their parents	764 European ancestry cases, 592 Costa Rican ancestry cases	10p15.1	PRKCQ, IL2RA, IL15RA, KLF6	rs11252394-A	0.08	2E-7	(Additive Model)			Illumina [534290]	N
617	chr10	4249353	4249354	rs58150014	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	10p15.1	KLF6	rs58150014-G	NR	2E-6		0.222	[0.13-0.31] unit increase	Illumina [5527232] (imputed)	N
617	chr10	4304581	4304582	rs10795147	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10p15.1	NA	rs10795147-T		7E-9		0.0144384	[0.0095-0.0193] unit increase	Illumina [13288253] (imputed)	N
617	chr10	4304718	4304719	rs34418551	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	10p15.1	KLF6, LINC00704	rs34418551-C	0.902	4E-8	(AA)	0.084	[0.055-0.113] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
618	chr10	4328927	4328928	rs882601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p15.1	Intergenic	rs882601-T	0.3404	1E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
618	chr10	4331113	4331114	rs1033781	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	10p15.1	intergenic	rs1033781-G	0.14	5E-8		0.0469	[0.03-0.064] unit decrease	Illumina [545605]	N
618	chr10	4333423	4333424	rs7097017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p15.1		rs7097017-?	NR	5E-10				NR [~ 8900000] (imputed)	N
618	chr10	4358048	4358049	rs12773994	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p15.1	Intergenic	rs12773994-T	0.5949	4E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
618	chr10	4358048	4358049	rs12773994	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10p15.1	NR	rs12773994-T	NR	2E-6	(female)	0.1111	[0.065-0.157] unit increase	Illumina [11133794] (imputed)	N
618	chr10	4362719	4362720	rs4881316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p15.1	Intergenic	rs4881316-A	0.4057	4E-10	(MTAG)	0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
618	chr10	4404403	4404404	rs184158217	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	10p15.1	NR	rs184158217-G	0.004	4E-6		5.19	[2.57-10.51]	Illumina [9327222] (imputed)	N
618	chr10	4435024	4435025	rs190222562	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	10p15.1	NR	rs190222562-?	NR	5E-7		0.2714	[0.17-0.38] unit decrease	Illumina [at least 560000] (imputed)	N
619	chr10	4485530	4485531	rs1679430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10p15.1		rs1679430-T	NR	2E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
619	chr10	4485914	4485915	rs1631022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs1631022-C	0.187659	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
619	chr10	4485914	4485915	rs1631022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs1631022-C	0.186811	4E-12				Affymetrix, Illumina [24558453] (imputed)	N
619	chr10	4488890	4488891	rs1751287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p15.1		rs1751287-A	NR	1E-10		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
619	chr10	4488890	4488891	rs1751287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs1751287-A	0.193892	3E-13				Affymetrix, Illumina [24332387] (imputed)	N
619	chr10	4490009	4490010	rs1679426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10p15.1	NR	rs1679426-G	0.15783	2E-10		0.016155	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
619	chr10	4490009	4490010	rs1679426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p15.1	NR	rs1679426-G	0.157876	2E-12		0.017881	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
619	chr10	4497035	4497036	rs1628427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p15.1	NR	rs1628427-T	0.15773	5E-13		0.018271	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
619	chr10	4498685	4498686	rs1751299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p15.1		rs1751299-G	0.157775	2E-9		0.018258993	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
619	chr10	4517496	4517497	rs9663459	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10p15.1		rs9663459-A	NR	5E-7		1.08	[1.048-1.112]	Affymetrix [7846216] (imputed)	N
619	chr10	4527446	4527447	rs72768114	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute xerostomia)	802 Dutch ancestry individuals	241 Dutch ancestry individuals	10p15.1		rs72768114-A	NR	2E-6		0.40389502	[0.24-0.57] increase	Illumina [6334277] (imputed)	N
620	chr10	4640603	4640604	rs12778640	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p15.1		rs12778640-G	0.35	8E-11		6.5	z score increase	Affymetrix [9061022] (imputed)	N
620	chr10	4640603	4640604	rs12778640	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p15.1	NR	rs12778640-G	0.3316	4E-12				NR [9056863] (imputed)	N
620	chr10	4649015	4649016	rs17369062	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p15.1		rs17369062-T	0.34	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
620	chr10	4650562	4650563	rs11252624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p15.1	Intergenic	rs11252624-T	0.3158	3E-11	(MTAG)	0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
620	chr10	4650562	4650563	rs11252624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p15.1	Intergenic	rs11252624-T	0.3205	2E-10	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
620	chr10	4655564	4655565	rs10458787	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Body mass index	11,536 European ancestry individuals	NA		intergenic	rs10458787-G	0.76	1E-6		0.09	[0.04-0.14] SD increase	Illumina [559712] (imputed)	N
620	chr10	4676195	4676196	rs7086888	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10p15.1	NR	rs7086888-G	0.07	8E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.87	[1.42-2.46]	Illumina [414804] (imputed)	N
620	chr10	4716541	4716542	rs2165953	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.1	LOC338588	rs2165953-G	0.153	9E-6	(Sedentary activity )	0.02	[NR] min/d increase	Illumina [899892]	N
621	chr10	4719795	4719796	rs1391511	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA		AKR1E2, LOC338588	rs1391511-?	0.36	7E-6		1.84	[1.41-2.40]	Illumina [346110]	N
621	chr10	4732554	4732555	rs11252662	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	AKR1C1	rs11252662-?	NR	3E-6	(LPE 20:4)	0.2475517	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
621	chr10	4809074	4809075	rs17133587	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	10p15.1	AKR1E2	rs17133587-?	NR	5E-9	(Latino)	1.8	[1.61-2.00]	Affymetrix, Illumina [NR] (imputed)	N
621	chr10	4809074	4809075	rs17133587	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	10p15.1	AKR1E2	rs17133587-?	NR	1E-6		1.45	[1.25-1.69]	Affymetrix, Illumina [NR] (imputed)	N
621	chr10	4809074	4809075	rs17133587	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	AKR1C1	rs17133587-?	NR	5E-6	(LPE 18:2)	0.3160432	[0.18-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
621	chr10	4811924	4811925	rs11595166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p15.1		rs11595166-T	0.0785	3E-8	(conditional-joint)	0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
621	chr10	4845593	4845594	rs11252752	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p15.1	NR	rs11252752-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
622	chr10	4859311	4859312	rs2167696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs2167696-T	NR	7E-12		0.0309296	[0.022-0.04] unit decrease	Affymetrix [323858] (imputed)	N
622	chr10	4859311	4859312	rs2167696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs2167696-T	NR	1E-12		0.0319624	[0.023-0.041] unit decrease	Affymetrix [127266] (imputed)	N
622	chr10	4859311	4859312	rs2167696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs2167696-T	NR	4E-10		0.028919	[0.02-0.038] unit increase	Affymetrix [323858] (imputed)	N
622	chr10	4866346	4866347	rs182298754	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs182298754-?	NR	2E-9	(IL2RA)	0.875974	[0.59-1.16] unit increase	Illumina [11901634] (imputed)	N
622	chr10	4868302	4868303	rs11252766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs11252766-A	NR	1E-10		0.0360841	[0.025-0.047] unit decrease	Affymetrix [323858] (imputed)	N
622	chr10	4868302	4868303	rs11252766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs11252766-A	NR	4E-12		0.0388169	[0.028-0.05] unit decrease	Affymetrix [127266] (imputed)	N
622	chr10	4868878	4868879	rs12248294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs12248294-G	NR	7E-9		0.0332615	[0.022-0.045] unit increase	Affymetrix [323858] (imputed)	N
622	chr10	4874018	4874019	rs17133680	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p15.1	NR	rs17133680-?	NR	5E-9				Affymetrix [NR]	N
622	chr10	4886731	4886732	rs56142017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs56142017-C	NR	4E-9		0.0425721	[0.028-0.057] unit decrease	Affymetrix [323858] (imputed)	N
622	chr10	4886731	4886732	rs56142017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs56142017-C	NR	4E-10		0.0455292	[0.031-0.06] unit decrease	Affymetrix [127266] (imputed)	N
622	chr10	4886731	4886732	rs56142017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1E2	rs56142017-C	NR	6E-10		0.0460877	[0.032-0.061] unit increase	Affymetrix [323858] (imputed)	N
622	chr10	4920412	4920413	rs10904363	24827717	Yang F	2014-05-01	Biomed Environ Sci	Genome wide association study: searching for genes underlying body mass index in the Chinese.	Body mass index	597 Han Chinese ancestry individuals	2,955 Han Chinese ancestry individuals	10p15.1	AKR1CL2	rs10904363-?	NR	3E-6				Affymetrix [281533]	N
622	chr10	4959250	4959251	rs10751993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs10751993-G	NR	7E-9		0.0185348	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
622	chr10	4959250	4959251	rs10751993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs10751993-G	NR	1E-9		0.0193755	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
622	chr10	4961020	4961021	rs4453114	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	10p15.1	AKR1C6P, AKR1C1	rs4453114-C	0.050833542	2E-6		1.2302109	[1.129398369-1.340022202]	Illumina [10439017] (imputed)	N
622	chr10	4961277	4961278	rs35288270	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p15.1	intergenic	rs35288270-T	0.8656	3E-32		0.0328	[0.027-0.038] unit increase	Affymetrix [18391927] (imputed)	N
622	chr10	4963326	4963327	rs12774134	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p15.1	NR	rs12774134-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
622	chr10	4963326	4963327	rs12774134	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p15.1	NR	rs12774134-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p15.1		rs12774134-?	NR	6E-13				NR [~ 8900000] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10p15.1	NR	rs12774134-C	0.88	9E-14		0.02	[0.015-0.025] unit increase	Affymetrix [2446094] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10p15.1	NR	rs12774134-C	0.88	5E-8				Affymetrix [2446094] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	10p15.1	NR	rs12774134-T	0.1186	2E-12		0.0188	[0.014-0.024] unit decrease	NR [~ 27400000] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p15.1	NA	rs12774134-T	0.1187	2E-9		0.0158	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
622	chr10	4963326	4963327	rs12774134	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	10p15.1	NR	rs12774134-T	0.1187	2E-9		0.0158	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
622	chr10	4965433	4965434	rs4332428	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	10p15.1	AKR1C1	rs4332428-A	0.879	2E-15		0.036	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
622	chr10	4978418	4978419	rs10904377	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	10p15.1	AKR1C6P, AKR1C1	rs10904377-T	0.049066486	2E-6		1.1438692	[1.081904674-1.209382463]	Illumina [10439017] (imputed)	N
623	chr10	4986043	4986044	rs4339935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs4339935-T	NR	5E-11		0.0205748	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
623	chr10	4986043	4986044	rs4339935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs4339935-T	NR	4E-12		0.0217059	[0.016-0.028] unit decrease	Affymetrix [127266] (imputed)	N
623	chr10	4986043	4986044	rs4339935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs4339935-T	NR	3E-8		0.0178009	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
623	chr10	5005859	5005860	rs41305661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs41305661-T	NR	2E-16		0.0433231	[0.033-0.054] unit decrease	Affymetrix [323858] (imputed)	N
623	chr10	5005859	5005860	rs41305661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs41305661-T	NR	5E-19		0.047087	[0.037-0.057] unit decrease	Affymetrix [127266] (imputed)	N
623	chr10	5005859	5005860	rs41305661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs41305661-T	NR	8E-12		0.0356422	[0.025-0.046] unit decrease	Affymetrix [321114] (imputed)	N
623	chr10	5005859	5005860	rs41305661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs41305661-T	NR	2E-12		0.0380187	[0.027-0.049] unit increase	Affymetrix [323858] (imputed)	N
623	chr10	5006097	5006098	rs7073738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs7073738-A	NR	1E-11		0.0288704	[0.021-0.037] unit decrease	Affymetrix [323858] (imputed)	N
623	chr10	5006097	5006098	rs7073738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs7073738-A	NR	1E-13		0.0314949	[0.023-0.04] unit decrease	Affymetrix [127266] (imputed)	N
623	chr10	5006097	5006098	rs7073738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs7073738-A	NR	2E-9		0.0253249	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
623	chr10	5009738	5009739	rs145648894	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p15.1	AKR1C1	rs145648894-G	0.111	4E-23	(Aldo-keto reductase family 1 member C1, AKR1C1.12618.50.3)	0.39	[0.31-0.47] unit increase	Affymetrix [10572788] (imputed)	N
623	chr10	5009758	5009759	rs2904804	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	10p15.1	AKR1C1	rs2904804-T	NR	6E-6		0.117	[0.066-0.168] unit increase	Illumina [628922]	N
623	chr10	5013771	5013772	rs7916500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs7916500-G	NR	1E-8		0.0204441	[0.013-0.027] unit decrease	Affymetrix [127266] (imputed)	N
623	chr10	5024050	5024051	rs77045180	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Hypopharyngeal or laryngeal cancer	394 European ancestry cases, 4,493 European ancestry controls	295 European ancestry cases, 3,232 European ancestry controls	10p15.1	AKR1C1	rs77045180-T	0.02	1E-7		2.51	[3.52-1.79]	Illumina [7858089] (imputed)	N
623	chr10	5025638	5025639	rs6601888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1C1	rs6601888-C	NR	1E-8		0.0183921	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
623	chr10	5031628	5031628	rs536435747	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p15.1	AKR1C2	rs536435747-A	0.8862	7E-6		0.047	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
623	chr10	5035175	5035176	rs10904386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1C2	rs10904386-A	NR	6E-12		0.0249324	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
623	chr10	5042293	5042294	rs12764498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p15.1		rs12764498-C	NR	4E-31		0.0274	[0.023-0.032] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
623	chr10	5042293	5042294	rs12764498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.1		rs12764498-?	NR	3E-54				NR [~ 8900000] (imputed)	N
623	chr10	5048013	5048014	rs2801885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10p15.1	AKR1C2	rs2801885-G	NR	6E-11		0.0231454	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
623	chr10	5048013	5048014	rs2801885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C2	rs2801885-G	NR	2E-11		0.0237095	[0.017-0.031] unit increase	Affymetrix [127266] (imputed)	N
623	chr10	5058489	5058490	rs35264282	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	10p15.1		rs35264282-G	0.71	8E-6		0.1	[0.061-0.139] unit decrease	Illumina [5305352] (imputed)	N
623	chr10	5061977	5061978	rs145611933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p15.1	AKR1C2	rs145611933-C	NR	1E-8		0.0415944	[0.027-0.056] unit decrease	Affymetrix [127266] (imputed)	N
623	chr10	5061977	5061978	rs145611933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10p15.1	AKR1C2	rs145611933-C	NR	3E-10		0.0470642	[0.032-0.062] unit increase	Affymetrix [323858] (imputed)	N
623	chr10	5062211	5062212	rs1937883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10p15.1	NR	rs1937883-G	0.704302	3E-16		0.0182063	[0.014-0.023] unit increase	Affymetrix [16583148] (imputed)	N
623	chr10	5062751	5062752	rs36032941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10p15.1	NR	rs36032941-C	0.704267	5E-56		0.0225548	[0.02-0.025] unit increase	Affymetrix [16578495] (imputed)	N
623	chr10	5062751	5062752	rs36032941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10p15.1	NR	rs36032941-C	0.704004	3E-94		0.0628496	[0.057-0.069] unit increase	Affymetrix [16580851] (imputed)	N
623	chr10	5063381	5063382	rs61856128	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	10p15.1	NR	rs61856128-C	0.703561	1E-36		0.0346	[0.029-0.04] unit increase	Affymetrix [16585745] (imputed)	N
623	chr10	5063488	5063489	rs35867629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p15.1		rs35867629-?	NR	4E-8				NR [~ 8900000] (imputed)	N
623	chr10	5087977	5087978	rs61856137	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	10p15.1	AKR1C2	rs61856137-G	NR	2E-7		1.8382351	[NR]	Illumina [5595657] (imputed)	N
623	chr10	5091953	5091954	rs4525119	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	Epithelial ovarian cancer	755 African ancestry cases, 1,235 African ancestry controls	NA	10p15.1	AKR1C3	rs4525119-C	0.669	5E-7		1.4285715	[1.23-1.64]	Illumina [12486624] (imputed)	N
624	chr10	5122379	5122379	rs58556414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10p15.1		rs58556414-CTGG	NR	5E-10		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
624	chr10	5138035	5138036	rs2518049	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10p15.1	AKR1C	rs2518049-A	0.175	7E-13	(SM-13)	0.07	[NR] unit decrease	Affymetrix, Illumina [534665]	N
624	chr10	5142854	5142855	rs4559587	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	AKR1CL1	rs4559587-?	NR	3E-6	(creatine)	0.30495447	[0.18-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
624	chr10	5143716	5143717	rs117400599	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	10p15.1	AKR1C3	rs117400599-G	0.04	2E-6		0.467	[0.28-0.66] unit increase	Illumina [NR] (imputed)	N
624	chr10	5161954	5161955	rs1937920	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Hip bone mineral content accrual during adolescent growth spurt	125 women, 133 men	NA	10p15.1	NR	rs1937920-G	0.25	3E-6	(Male)	0.98	[0.59-1.37] g decrease	Illumina [509842]	N
624	chr10	5177144	5177145	rs117825039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p15.1	NR	rs117825039-C	NR	4E-10		0.051	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
624	chr10	5183736	5183737	rs75248390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10p15.1	NR	rs75248390-T	NR	8E-13		0.0433	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
624	chr10	5183736	5183737	rs75248390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p15.1	NR	rs75248390-T	NR	1E-14		0.0445	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
624	chr10	5219538	5219539	rs139515701	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10p15.1	AKR1C8P	rs139515701-C	0.1715	2E-7	(EA)			Illumina [4404269] (imputed)	N
624	chr10	5238282	5238283	rs3812617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs3812617-T	0.139094	3E-15				Affymetrix, Illumina [24653286] (imputed)	N
624	chr10	5238282	5238283	rs3812617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs3812617-T	0.139144	4E-15				Affymetrix, Illumina [24558453] (imputed)	N
624	chr10	5238542	5238546	rs147376510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p15.1	AKR1C4	rs147376510-C	0.160058	5E-11		0.019858096	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
624	chr10	5239823	5239824	rs7087111	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10p15.1	NR	rs7087111-C	NR	6E-6		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
625	chr10	5245779	5245780	rs76669111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10p15.1		rs76669111-T	NR	1E-15		0.0235	[0.018-0.029] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
625	chr10	5245779	5245780	rs76669111	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10p15.1	AKR1C4	rs76669111-G	0.844845	2E-21		0.00291036	[0.0023-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
625	chr10	5245779	5245780	rs76669111	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10p15.1	AKR1C4	rs76669111-?	NR	2E-12		0.0253	[0.019-0.032] unit decrease	Affymetrix [5701386] (imputed)	N
625	chr10	5246084	5246085	rs17134531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10p15.1	NR	rs17134531-A	0.152399	3E-17		0.021655	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
625	chr10	5246124	5246125	rs77697233	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10p15.1		rs77697233-?	NR	3E-8		0.0155723	[0.01-0.021] unit increase	NR [6912294] (imputed)	N
625	chr10	5246177	5246177	rs3039101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	10p15.1		rs3039101-T	0.846399	2E-10		0.0352443	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
625	chr10	5251814	5251815	rs7909380	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10p15.1	AKR1C4	rs7909380-T	0.16	5E-13		7.23	z-score increase	Affymetrix [4311822] (imputed)	N
625	chr10	5252012	5252013	rs117310669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p15.1	NR	rs117310669-G	0.152737	9E-11		0.017077	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
625	chr10	5252012	5252013	rs117310669	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10p15.1	AKR1C4	rs117310669-G		1E-11		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
625	chr10	5252865	5252866	rs7475279	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10p15.1	NR	rs7475279-A	0.845559	1E-30		0.0183117	[0.015-0.022] unit increase	Affymetrix [16585854] (imputed)	N
625	chr10	5252865	5252866	rs7475279	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10p15.1	NR	rs7475279-A	0.845559	7E-30		0.0208561	[0.017-0.025] unit increase	Affymetrix [16585866] (imputed)	N
625	chr10	5254820	5254821	rs1831977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p15.1	AKR1C4	rs1831977-G	0.153679	5E-11		0.020155406	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
625	chr10	5254820	5254821	rs1831977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p15.1	NR	rs1831977-G	0.151783	3E-17		0.021665	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
625	chr10	5254846	5254847	rs1832007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10p15.1	NR	rs1832007-A	NR	2E-6		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
625	chr10	5254846	5254847	rs1832007	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10p15.1	NR	rs1832007-A	0.852	8E-6	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
625	chr10	5254846	5254847	rs1832007	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	10p15.1	AKR1C4	rs1832007-A	0.868	1E-14	(Trans-ethnic initial)	0.0327	[0.023-0.042] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
625	chr10	5254846	5254847	rs1832007	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10p15.1	AKR1C4	rs1832007-G	0.18	2E-12		0.033	[NR] mg/dL decrease	NR [NR] (imputed)	N
625	chr10	5256271	5256272	rs17134585	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	10p15.1	AKR1C4	rs17134585-T	0.84	3E-38	(androsterone sulfate/epiandrosterone sulfate)	0.043	[0.037-0.049] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
625	chr10	5256336	5256336	rs782595255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	10p15.1		rs782595255-TC	0.178569	6E-9		0.0293482	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
625	chr10	5257281	5257282	rs182498797	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals, 3,205 South Asian ancestry individuals, 2,095 East Asian ancestry individuals, 10,661 Hispanic/Latina individuals, 3,557 individuals	NA	10p15.1	NR	rs182498797-A	0.008	2E-8		0.53	[0.35-0.71] unit increase	Affymetrix, Illumina [NR] (imputed)	N
625	chr10	5257281	5257282	rs182498797	34021356	Sarnowski C	2021-05-22	Hum Reprod	Large trans-ethnic meta-analysis identifies AKR1C4 as a novel gene associated with age at menarche.	Menarche (age at onset)	19,028 African ancestry individuals	5,148 African ancestry individuals	10p15.1	AKR1C4	rs182498797-A	0.02	3E-9		0.51	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
625	chr10	5257646	5257647	rs75406471	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10p15.1	AKR1C4	rs75406471-G	0.845749	1E-19		0.0246893	[0.019-0.03] unit increase	Affymetrix [NR] (imputed)	N
625	chr10	5257967	5257968	rs529754161	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10p15.1	AKR1C4	rs529754161-A	0.0047	6E-6		0.3766	[0.21-0.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
625	chr10	5260786	5260786	rs751059075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	10p15.1		rs751059075-GTC,rs751059075-GTC	0.846431	6E-10		0.0353852	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
625	chr10	5260786	5260786	rs751059075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	10p15.1		rs751059075-GTC,rs751059075-GTC	0.846431	6E-10		0.0353852	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
625	chr10	5260786	5260786	rs751059075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	10p15.1		rs751059075-GTC,rs751059075-GTC	0.846431	7E-11		0.037125	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
625	chr10	5260786	5260786	rs751059075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	10p15.1		rs751059075-GTC,rs751059075-GTC	0.846431	7E-11		0.037125	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
625	chr10	5261828	5261829	rs117849125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10p15.1		rs117849125-T	NR	6E-13		0.0226	[0.017-0.029] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
625	chr10	5261829	5261830	rs117146235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	10p15.1		rs117146235-A	0.868548	2E-8		0.0352766	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868343	6E-9		0.0354157	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868343	3E-10		0.038219	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868343	2E-8		0.0356247	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	2E-10		0.0404616	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868343	2E-8		0.0337415	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	8E-11		0.0390194	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	1E-10		0.0407977	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	2E-10		0.0395506	[0.027-0.052] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	4E-12		0.041878	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	2E-11		0.0402847	[0.029-0.052] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868328	1E-8		0.0355756	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
625	chr10	5261831	5261832	rs117488242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	10p15.1		rs117488242-A	0.868343	8E-11		0.0407791	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
625	chr10	5262266	5262267	rs79717793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	10p15.1		rs79717793-G	0.845861	7E-9		0.0325686	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
625	chr10	5262266	5262267	rs79717793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10p15.1	NR	rs79717793-G	0.845344	9E-36		0.0493115	[0.041-0.058] unit increase	Affymetrix [16577313] (imputed)	N
625	chr10	5262266	5262267	rs79717793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10p15.1	NR	rs79717793-G	0.845123	9E-84		0.0207012	[0.018-0.023] unit increase	Affymetrix [16582909] (imputed)	N
625	chr10	5262266	5262267	rs79717793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10p15.1	NR	rs79717793-G	0.844975	5E-58		0.0233973	[0.02-0.026] unit increase	Affymetrix [16582621] (imputed)	N
625	chr10	5262266	5262267	rs79717793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10p15.1	NR	rs79717793-G	0.845123	2E-78		0.0225722	[0.02-0.025] unit increase	Affymetrix [16582965] (imputed)	N
625	chr10	5262266	5262267	rs79717793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10p15.1	NR	rs79717793-G	0.844975	3E-55		0.0246105	[0.021-0.028] unit increase	Affymetrix [16582614] (imputed)	N
625	chr10	5262777	5262778	rs140168704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10p15.1		rs140168704-T	NR	2E-18		0.0283	[0.022-0.035] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
625	chr10	5267190	5267191	rs140107293	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10p15.1	AKR1C4	rs140107293-A	0.845295	3E-16		0.0225703	[0.017-0.028] unit increase	Affymetrix [NR] (imputed)	N
625	chr10	5273529	5273530	rs117594056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10p15.1	NR	rs117594056-T	NR	4E-11		0.0515	[0.036-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
625	chr10	5273529	5273530	rs117594056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p15.1	NR	rs117594056-T	NR	8E-12		0.0511	[0.036-0.066] unit increase	Affymetrix [9000000] (imputed)	N
625	chr10	5284556	5284557	rs7897822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10p15.1		rs7897822-A	NR	7E-10		0.0171	[0.012-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
625	chr10	5325307	5325308	rs75857264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p15.1		rs75857264-T	NR	3E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
625	chr10	5325577	5325578	rs144291885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10p15.1		rs144291885-A	NR	1E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
625	chr10	5331559	5331560	rs7896356	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	10p15.1	AKR1C4	rs7896356-?	NR	3E-11		0.00771	[0.0034-0.012] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
625	chr10	5347380	5347381	rs12415284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.1		rs12415284-?	NR	7E-9				NR [~ 8900000] (imputed)	N
625	chr10	5349870	5349871	rs7475343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10p15.1	NR	rs7475343-T	NR	5E-9		0.0177	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
625	chr10	5349870	5349871	rs7475343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10p15.1	NR	rs7475343-T	NR	7E-20		0.029	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
625	chr10	5349870	5349871	rs7475343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10p15.1	NR	rs7475343-T	NR	2E-9		0.0181	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
625	chr10	5349870	5349871	rs7475343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p15.1	NR	rs7475343-T	NR	3E-30		0.0347	[0.029-0.041] unit increase	Affymetrix [9000000] (imputed)	N
626	chr10	5384809	5384810	rs10752009	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	TUBAL3	rs10752009-?	NR	8E-6	(TAG 52:6)	0.1760631	[0.099-0.253] unit decrease	Affymetrix [at least 2500000] (imputed)	N
626	chr10	5384809	5384810	rs10752009	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	TUBAL3	rs10752009-?	NR	6E-6	(TAG 54:8)	0.17892472	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
626	chr10	5385028	5385029	rs10904463	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	TUBAL3	rs10904463-?	NR	5E-6	(TAG 52:5)	0.17266169	[0.099-0.247] unit decrease	Affymetrix [at least 2500000] (imputed)	N
626	chr10	5401458	5401459	rs140734053	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	10p15.1	NR	rs140734053-G		4E-6		0.7257	[0.42-1.03] SD units decrease	NR [10700000] (imputed)	N
626	chr10	5452368	5452369	rs9423612	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs9423612-?	NR	2E-9	(IL2RA)	0.661239	[0.44-0.88] unit increase	Illumina [11901634] (imputed)	N
626	chr10	5464705	5464706	rs11253170	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p15.1	NR	rs11253170-?	NR	2E-7		5.173	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
627	chr10	5546696	5546697	rs11253209	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	10p15.1		rs11253209-?	NR	6E-6		1.06063	[1.04-1.09]	NR [685523]	N
627	chr10	5588566	5588567	rs4074244	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p15.1		rs4074244-C	0.34	4E-18		8.67	z score increase	Affymetrix [9061022] (imputed)	N
627	chr10	5588566	5588567	rs4074244	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p15.1		rs4074244-C	0.34	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
627	chr10	5588566	5588567	rs4074244	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p15.1	NR	rs4074244-C	0.3601	1E-9				NR [9056863] (imputed)	N
627	chr10	5605333	5605334	rs9423654	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	NR	rs9423654-G		2E-6		0.1357	[0.08-0.191] SD units increase	NR [10700000] (imputed)	N
627	chr10	5608201	5608202	rs7899101	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	10p15.1	ASB13	rs7899101-?		3E-6				Illumina [859311]	N
627	chr10	5615533	5615534	rs4880735	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p15.1	LOC105376382	rs4880735-G	0.81172	5E-11		0.0154829	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
627	chr10	5615533	5615534	rs4880735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p15.1		rs4880735-?	NR	9E-13				NR [~ 8900000] (imputed)	N
628	chr10	5643510	5643511	rs7350438	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p15.1	NR	rs7350438-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
628	chr10	5648786	5648787	rs7907173	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p15.1	NA	rs7907173-A	0.4511	9E-10		0.0109	[0.0074-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
628	chr10	5654741	5654742	rs7099771	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p15.1	NR	rs7099771-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
628	chr10	5654741	5654742	rs7099771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p15.1		rs7099771-?	NR	3E-9				NR [~ 8900000] (imputed)	N
628	chr10	5662118	5662119	rs7093310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p15.1		rs7093310-?	NR	3E-18				NR [~ 8900000] (imputed)	N
628	chr10	5664085	5664086	rs55813016	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	10p15.1	CALML3, ASB13	rs55813016-A	0.03	3E-7	(African American)	1.12	[0.69-1.55] unit decrease	Illumina [up to 13042663] (imputed)	N
628	chr10	5688084	5688085	rs10905791	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	10p15.1	NR	rs10905791-T	NR	2E-6		0.091	[0.054-0.128] unit increase	Illumina [6319684] (imputed)	N
628	chr10	5689149	5689150	rs78909240	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p15.1	ASB13	rs78909240-C	0.1204	2E-8		0.1789	[0.12-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
628	chr10	5702258	5702259	rs2386642	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	10p15.1	ASB13	rs2386642-A	0.673173	1E-6		0.025555	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
628	chr10	5705598	5705599	rs10128251	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10p15.1	NR	rs10128251-?	NR	6E-6		0.044	[0.025-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
628	chr10	5719256	5719257	rs7075218	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs7075218-?	NR	3E-10	(IL2RA)	0.696018	[0.48-0.91] unit increase	Illumina [11901634] (imputed)	N
628	chr10	5721700	5721701	rs78135803	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p15.1		rs78135803-?	NR	8E-10		0.0296769	[0.02-0.039] unit increase	Affymetrix [20259828] (imputed)	N
628	chr10	5733130	5733131	rs7910414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p15.1		rs7910414-?	NR	2E-11				NR [~ 8900000] (imputed)	N
629	chr10	5767176	5767177	rs76154345	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	10p15.1	FAM208B	rs76154345-A	0.793594	8E-11				Affymetrix, Illumina [NR] (imputed)	N
629	chr10	5767176	5767177	rs76154345	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	10p15.1	GDI2	rs76154345-?	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
629	chr10	5769826	5769827	rs10905065	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	10p15.1	FBXO18	rs10905065-A	0.61	4E-8		0.11	[0.071-0.149] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
629	chr10	5784150	5784151	rs45575338	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	10p15.1	FAM208B	rs45575338-?	NR	2E-8				Affymetrix, Illumina [7850345] (imputed)	N
629	chr10	5789971	5789980	rs374137069	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	10p15.1	NR	rs374137069-C	0.01101	2E-6		0.6877	[0.40-0.97] unit increase	Illumina [10677593] (imputed)	N
629	chr10	5794651	5794652	rs55910451	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p15.1	NR	rs55910451-G	0.218	4E-7	(EA)	0.0377	[0.023-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
629	chr10	5804530	5804531	rs2797501	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	10p15.1	C10orf18, GDI2	rs2797501-A	NR	8E-6		1.61	[1.30-1.96]	Illumina [698968]	N
629	chr10	5804864	5804865	rs56352451	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10p15.1	FAM208B	rs56352451-T	0.1329	3E-8		0.1992	[0.13-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
629	chr10	5807542	5807543	rs151282944	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	NR	rs151282944-G		6E-6		0.5731	[0.32-0.82] SD units increase	NR [10700000] (imputed)	N
629	chr10	5815593	5815594	rs145992761	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	10p15.1		rs145992761-G	0.01414	3E-6		4.327	[2.348-7.976]	Affymetrix [7975321] (imputed)	N
629	chr10	5833747	5833748	rs2890364	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p15.1	GDI2	rs2890364-G	0.7740625	9E-14	(GDI2, 2647_66_2)	0.21895224	[0.16-0.28] unit increase	Illumina [> 1000000] (imputed)	N
629	chr10	5854473	5854474	rs142276437	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs142276437-?	NR	1E-10	(IL2RA)	0.73191	[0.51-0.95] unit increase	Illumina [11901634] (imputed)	N
629	chr10	5855402	5855403	rs3736461	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDI2	5,359 Icelandic ancestry individuals	NA	10p15.1		rs3736461-C	0.2159	8E-17		0.185852	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
629	chr10	5882334	5882334	rs545406654	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GDI2	rs545406654-?	NR	1E-8		0.46	[NR] unit increase	Affymetrix [NR] (imputed)	N
629	chr10	5885960	5885964	rs147280227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p15.1		rs147280227-C	NR	4E-11		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
629	chr10	5886733	5886734	rs2380205	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls		ANKRD16, FBXO18	rs2380205-C	0.57	5E-7		1.06	[1.02-1.10]	Illumina [582886]	N
629	chr10	5894089	5894090	rs11255548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10p15.1	NR	rs11255548-C	0.379159	3E-25		0.02006	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
630	chr10	5901366	5901367	rs907690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p15.1	ANKRD16, RP11-318E3.4	rs907690-T	0.362483	1E-17		0.020121682	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
630	chr10	5904917	5904918	rs2203197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs2203197-T	0.379763	4E-24				Affymetrix, Illumina [23467995] (imputed)	N
630	chr10	5910745	5910746	rs77448389	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10p15.1	ANKRD16	rs77448389-A	0.913	7E-10		0.855	[0.81-0.9]	Illumina [11270530] (imputed)	N
630	chr10	5918431	5918432	rs17145612	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p15.1	ANKRD16	rs17145612-A	0.0080	6E-6	(Head circumference )	0.01	[NR] cm increase	Illumina [899892]	N
630	chr10	5919359	5919360	rs34037190	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	NR	rs34037190-G		6E-7		0.4679	[0.28-0.65] SD units decrease	NR [10700000] (imputed)	N
630	chr10	5927450	5927451	rs61832952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p15.1		rs61832952-?	NR	5E-8				NR [~ 8900000] (imputed)	N
630	chr10	5956833	5956834	rs3891620	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p15.1	NR	rs3891620-?	NR	2E-14				Affymetrix [NR]	N
630	chr10	5994840	5994841	rs8177788	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10p15.1	IL15RA	rs8177788-T	0.0101659	3E-8		0.25184885	[0.16-0.34] unit decrease	Affymetrix [7288503] (imputed)	N
630	chr10	5997819	5997820	rs3136630	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	interleukin 15 receptor subunit alpha levels	982 Scottish ancestry individuals	NA	10p15.1	NR	rs3136630-T	0.31691	7E-14		0.41044	[0.3-0.52] unit decrease	Illumina [7903493] (imputed)	N
630	chr10	6002517	6002518	rs77226427	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	10p15.1	IL15RA	rs77226427-?		1E-14		3.7	[2.6-5.1]	Illumina [NR] (imputed)	N
630	chr10	6007548	6007549	rs8177688	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15RA	5,368 Icelandic ancestry individuals	NA	10p15.1		rs8177688-T	0.09132	3E-13		0.226579	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
630	chr10	6008957	6008958	rs8177683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15RA	5,334 Icelandic ancestry individuals	NA	10p15.1		rs8177683-T	0.3954	2E-22		0.164116	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
630	chr10	6008957	6008958	rs8177683	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p15.1	IL15RA	rs8177683-C	0.6040625	1E-16	(IL15RA, 3445_53_2)	0.20689608	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
630	chr10	6009139	6009140	rs4747823	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15RA	5,368 Icelandic ancestry individuals	NA	10p15.1		rs4747823-T	0.02785	4E-29		0.613763	[0.51-0.72] unit decrease	Illumina [7506463] (imputed)	N
630	chr10	6009139	6009140	rs4747823	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p15.1	NR	rs4747823-C	0.968	4E-21	(Interleukin-15 receptor subunit alpha, IL15RA.14054.17.3)	0.67	[0.53-0.81] unit increase	Affymetrix [10572788] (imputed)	N
630	chr10	6010226	6010227	rs7097780	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10p15.1	IL15RA	rs7097780-G	0.3345106	4E-14	(EA, Interleukin-15 receptor subunit alpha)	0.3399	[0.25-0.43] unit increase	Affymetrix [509946]	N
630	chr10	6014983	6014984	rs8177656	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15RA	5,334 Icelandic ancestry individuals	NA	10p15.1		rs8177656-A	0.09026	1E-7		0.152508	[0.096-0.209] unit increase	Illumina [7506463] (imputed)	N
630	chr10	6014983	6014984	rs8177656	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p15.1	NR	rs8177656-A	0.087	4E-24	(Interleukin-15 receptor subunit alpha, IL15RA.14054.17.3)	0.44	[0.36-0.52] unit increase	Affymetrix [10572788] (imputed)	N
630	chr10	6015196	6015197	rs8177654	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p15.1	IL15RA	rs8177654-C	0.325	1E-27	(Interleukin-15 receptor subunit alpha, IL15RA.3445.53.2)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
630	chr10	6016398	6016399	rs7086174	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15RA	5,368 Icelandic ancestry individuals	NA	10p15.1		rs7086174-A	0.3957	1E-63		0.301225	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
630	chr10	6016398	6016399	rs7086174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p15.1	IL15RA	rs7086174-C	0.603125	9E-37	(IL15RA, 14054_17_3)	0.29946902	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
630	chr10	6016891	6016892	rs8177641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p15.1	IL15RA	rs8177641-G	0.318	2E-91	(Interleukin-15 receptor subunit alpha, IL15RA.14054.17.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
630	chr10	6019247	6019248	rs2274034	34834527	Park S	2021-11-10	J Pers Med	Interaction of Polygenetic Variants for Gestational Diabetes Mellitus Risk with Breastfeeding and Korean Balanced Diet to Influence Type 2 Diabetes Risk in Later Life in a Large Hospital-Based Cohort.	Gestational diabetes mellitus	384 cases, 33,956 controls	NA	10p15.1		rs2274034-?	NR	3E-6		0.72	[0.08-0.62]	Affymetrix [NR]	N
630	chr10	6027720	6027721	rs8177757	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10p15.1	IL15RA, IL2RA	rs8177757-?		2E-10	(EA, conditioned on rs7911500 and rs791590)			Illumina [2200000] (imputed)	N
631	chr10	6029725	6029726	rs6602360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p15.1	NR	rs6602360-A	NR	3E-10		0.0166	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
631	chr10	6033414	6033415	rs11256258	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	10p15.1		rs11256258-?	NR	1E-5				Illumina [7401356] (imputed)	N
631	chr10	6033414	6033415	rs11256258	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	10p15.1	IL 15RA	rs11256258-?	NR	9E-6				Illumina [7401356] (imputed)	N
631	chr10	6037725	6037726	rs7911500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p15.1	NR	rs7911500-T	NR	9E-12		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
631	chr10	6037725	6037726	rs7911500	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10p15.1	IL2RA, IL15RA, RMB17	rs7911500-?		1E-100	(EA)			Illumina [2200000] (imputed)	N
631	chr10	6037725	6037726	rs7911500	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	10p15.1	IL2RA	rs7911500-?	NR	5E-9	(hsCRP-IL6 pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
631	chr10	6038852	6038853	rs6602364	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	10p15.1	IL15RA, IL2RA	rs6602364-G	0.45	2E-6	(random effects)		NR	Illumina [15539996] (imputed)	N
631	chr10	6038852	6038853	rs6602364	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	10p15.1	IL15RA, IL2RA	rs6602364-G	0.45	1E-10	(EA, fixed effects)	1.05	[1.03-1.06]	Illumina [15539996] (imputed)	N
631	chr10	6042014	6042015	rs76913543	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p15.1	intergenic	rs76913543-?	NR	4E-12	(subset analysis)			Illumina [130052]	N
631	chr10	6043477	6043478	rs10795733	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	10p15.1		rs10795733-A	0.5027	3E-13		0.92		Affymetrix, Illumina [9397031] (imputed)	N
631	chr10	6053162	6053163	rs12722605	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	10p15.1	IL2RA	rs12722605-?	NR	3E-7	(MCP1-TNF-a pattern postfenofibrate)			Affymetrix [2543887] (imputed)	N
631	chr10	6054764	6054765	rs12722600	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs12722600-T	0.0707	5E-11		0.3254	[0.23-0.42] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6054764	6054765	rs12722600	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on resting CD4 regulatory T cell	3,434 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs12722600-T	0.07047	1E-10		0.3212	[0.22-0.42] unit increase	Illumina [18357007] (imputed)	N
631	chr10	6055221	6055222	rs11256335	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10p15.1	GPR65	rs11256335-A	NR	3E-6		0.26388082	[0.15-0.37] unit decrease	Illumina [> 6200000] (imputed)	N
631	chr10	6055603	6055604	rs9663421	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p15.1	IL2RA	rs9663421-C	0.723737	3E-10		1.0448987	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
631	chr10	6057180	6057181	rs12722595	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs12722595-C	0.0707	2E-11		0.3288	[0.23-0.42] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6058322	6058323	rs4749894	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10p15.1	IL2RA	rs4749894-A	0.76	4E-17				NR [> 9500000] (imputed)	N
631	chr10	6060432	6060433	rs12722588	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	NR	rs12722588-C		9E-20	(conditioned on rs12722497)	0.298	SD units increase	NR [10700000] (imputed)	N
631	chr10	6066461	6066462	rs12722574	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p15.1	IL2RA	rs12722574-A	NR	4E-7		1.1039965	NR	Affymetrix, Illumina [8278136] (imputed)	N
631	chr10	6067687	6067688	rs2025345	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p15.1	intergenic	rs2025345-G	0.3743	3E-6		0.0572	[0.033-0.081] unit decrease	Illumina [2400000] (imputed)	N
631	chr10	6069892	6069893	rs12722561	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	10p15.1	IL2RA	rs12722561-A	0.1557	2E-6		0.5144	[0.32-0.71] unit decrease	Illumina [533687]	N
631	chr10	6069892	6069893	rs12722561	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels or multiple sclerosis	3,599 individuals, 1,956 Mexican American individuals, 5,545 European ancestry multiple sclerosis cases, 12,153 European ancestry non-multiple sclerosis controls		10p15.1	IL2RA	rs12722561-C	NR	6E-8				Illumina [up to 2529394] (imputed)	N
631	chr10	6070272	6070273	rs12722559	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p15.1	IL2RA	rs12722559-C	NR	2E-15		1.1372	NR	Affymetrix, Illumina [8278136] (imputed)	N
631	chr10	6070538	6070539	rs12722556	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p15.1	IL2RA, IL15RA, RBM17	rs12722556-A	0.019	2E-6		4.6	[2.31-9.16]	Illumina [1556551]	N
631	chr10	6072092	6072093	rs12722547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p15.1		rs12722547-C	NR	7E-15		0.0524	[0.039-0.066] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
631	chr10	6072092	6072093	rs12722547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p15.1	RP11-536K7.5, IL2RA	rs12722547-C	0.017462	2E-15		0.06842026	[0.052-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr10	6072092	6072093	rs12722547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs12722547-G	0.983235	6E-20				Affymetrix, Illumina [19872809] (imputed)	N
631	chr10	6072092	6072093	rs12722547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p15.1	NR	rs12722547-G	0.982586	4E-23		0.076394	[0.061-0.091] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
631	chr10	6072092	6072093	rs12722547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p15.1	NR	rs12722547-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
631	chr10	6072092	6072093	rs12722547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p15.1	NR	rs12722547-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
631	chr10	6072092	6072093	rs12722547	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p15.1	IL2RA	rs12722547-C	0.01696	6E-21				Affymetrix [15688218] (imputed)	N
631	chr10	6072092	6072093	rs12722547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p15.1		rs12722547-?	NR	3E-11				NR [~ 8900000] (imputed)	N
631	chr10	6072426	6072427	rs1323657	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	10p15.1	NR	rs1323657-A		2E-6		0.2081	[0.12-0.29] unit increase	Illumina [12759548] (imputed)	N
631	chr10	6074450	6074451	rs4747846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on secreting CD4 regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs4747846-C	0.38517	6E-10		0.161	[0.11-0.21] unit increase	Illumina [18357036] (imputed)	N
631	chr10	6074450	6074451	rs4747846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ secreting CD4 regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs4747846-C	0.38517	3E-8		0.1439	[0.093-0.194] unit increase	Illumina [18357036] (imputed)	N
631	chr10	6074450	6074451	rs4747846	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p15.1	IL2RA	rs4747846-C	0.52	1E-11		1.036	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
631	chr10	6076512	6076512	rs397728802	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ activated CD4 regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs397728802-CA	0.34177	1E-10		0.1713	[0.12-0.22] unit increase	Illumina [18357036] (imputed)	N
631	chr10	6076512	6076512	rs397728802	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ CD4 regulatory T cell	3,434 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs397728802-CA	0.34187	4E-12		0.1819	[0.13-0.23] unit increase	Illumina [18356566] (imputed)	N
631	chr10	6079034	6079035	rs7893467	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10p15.1	IL2RA	rs7893467-G	0.071527	3E-9		0.104973	[0.07-0.14] unit increase	Affymetrix [7288503] (imputed)	N
631	chr10	6079034	6079035	rs7893467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10p15.1		rs7893467-?	NR	3E-8				NR [~ 8900000] (imputed)	N
631	chr10	6081229	6081230	rs12722515	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p15.1	NR	rs12722515-C	0.84	5E-12	(EA)	1.1039582		Affymetrix, Illumina [~ 9000000] (imputed)	N
631	chr10	6081229	6081230	rs12722515	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p15.1	NR	rs12722515-C	0.84	8E-13	(EA)	1.1332967	[1.1-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
631	chr10	6081229	6081230	rs12722515	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p15.1	IL2RA, IL15RA	rs12722515-C	0.849	4E-10		1.102	[1.06-1.147]	Affymetrix, Illumina [1230000] (imputed)	N
631	chr10	6082557	6082558	rs11256464	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	10p15.1	NR	rs11256464-?	NR	7E-6		0.0604	[0.034-0.087] unit increase	Illumina [at least 560000] (imputed)	N
631	chr10	6082952	6082953	rs6602398	27643478	Powers A	2016-09-09	J Psychiatr Res	A genome-wide association study of emotion dysregulation: Evidence for interleukin 2 receptor alpha.	Emotional dysregulation	774 African American males, 1,826 African American females	NA	10p15.1	IL2RA	rs6602398-?	0.04	1E-8	(Males)	14.9	[9.80-20.00] unit increase	Illumina [883511]	N
631	chr10	6083238	6083239	rs12244238	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	10p15.1		rs12244238-?	NR	5E-9		1.06	[1.04-1.08]	Illumina [5170515] (imputed)	N
631	chr10	6087294	6087295	rs1107345	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	10p15.1	IL2RA	rs1107345-?	NR	3E-8		1.105461		Illumina [~ 460000] (imputed)	N
631	chr10	6089840	6089841	rs7909519	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	10p15.1	IL2RA	rs7909519-?	0.89	8E-10	(additive model)	1.3888888	[1.25-1.56]	Illumina [123003]	N
631	chr10	6090321	6090322	rs791590	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10p15.1	IL2RA	rs791590-?		7E-35	(EA, conditioned on rs7911500)			Illumina [2200000] (imputed)	N
631	chr10	6091016	6091017	rs7090504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10p15.1	IL2RA	rs7090504-A	0.1996	2E-15		0.03572404	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
631	chr10	6092345	6092346	rs12253981	28445677	Steri M	2017-04-27	N Engl J Med	Overexpression of the Cytokine BAFF and Autoimmunity Risk.	Multiple sclerosis	2,273 Sardinian cases, 2,148 Sardinian controls	6,840 European ancestry cases, 661 Sardinian cases, 3,176 cases, 6,044 European ancestry controls, 1,244 Sardinian controls, 2,958 controls	10p15.1	IL2RA	rs12253981-G	0.519	1E-9		1.31		Affymetrix [~ 12200000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	10p15.1		rs12722502-T	NR	1E-8		0.2076	[0.14-0.28] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
631	chr10	6093138	6093139	rs12722502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	10p15.1		rs12722502-T	NR	1E-9		0.2142	[0.15-0.28] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
631	chr10	6093138	6093139	rs12722502	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	10p15.1	IL2RA	rs12722502-T	0.0181028061997732	1E-15		0.2005718	[0.15-0.25] unit decrease	Affymetrix [35186738] (imputed)	N
631	chr10	6093138	6093139	rs12722502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p15.1	IL2RA	rs12722502-T	0.017644	1E-17		0.07260396	[0.056-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr10	6093138	6093139	rs12722502	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	10p15.1	IL2RA	rs12722502-C	0.982952	1E-24		1.2702866	[1.2135339925021-1.32969322362422]	NR [9572556] (imputed)	N
631	chr10	6093138	6093139	rs12722502	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p15.1	IL2RA, RBM17, IL15RA, PFKFB3, MIR3155A, MIR3155B	rs12722502-C	0.9819	1E-17		1.2426528	[1.18-1.3]	Affymetrix [32463443] (imputed)	N
631	chr10	6093138	6093139	rs12722502	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p15.1	NR	rs12722502-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p15.1	NR	rs12722502-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p15.1	ANKRD16, FBXO18, IL2RA, IL15RA, MIR3155A, MIR3155B, PFKFB3, RBM17	rs12722502-C	0.981845	6E-17		1.2156295	[1.17-1.26]	Affymetrix [8274727] (imputed)	N
631	chr10	6093138	6093139	rs12722502	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p15.1	NR	rs12722502-C	0.9827	3E-18		1.2312238	[1.18-1.29]	Affymetrix [15688218] (imputed)	N
631	chr10	6093138	6093139	rs12722502	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10p15.1	IL2RA	rs12722502-?	NR	7E-14		1.288	[1.22-1.35]	Affymetrix [9000000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	10p15.1	IL2RA	rs12722502-?	NR	4E-12		1.222	[1.17-1.28]	Affymetrix [9000000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p15.1	IL2RA	rs12722502-C	NR	2E-18		1.253	[1.2-1.3]	Affymetrix [9000000] (imputed)	N
631	chr10	6093138	6093139	rs12722502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p15.1		rs12722502-?	NR	8E-24				NR [~ 8900000] (imputed)	N
631	chr10	6094696	6094697	rs61839660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10p15.1		rs61839660-T	NR	2E-25		0.0415	[0.034-0.049] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
631	chr10	6094696	6094697	rs61839660	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	10p15.1		rs61839660-?	NR	5E-8				Affymetrix [NR] (imputed)	N
631	chr10	6094696	6094697	rs61839660	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	10p15.1		rs61839660-C	0.902	1E-21				Affymetrix [10369434] (imputed)	N
631	chr10	6094696	6094697	rs61839660	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	10p15.1		rs61839660-?	NR	5E-8				Affymetrix [NR] (imputed)	N
631	chr10	6094696	6094697	rs61839660	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10p15.1		rs61839660-C	0.902	1E-20				Affymetrix [10369434] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05419	2E-9		0.3436	[0.23-0.46] unit increase	Illumina [18335935] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell %T cell	3,162 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05408	3E-8		0.3212	[0.21-0.43] unit increase	Illumina [18208347] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA- CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05419	2E-22		0.5547	[0.44-0.67] unit increase	Illumina [18335935] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA- CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05426	5E-25		0.5758	[0.47-0.68] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA- CD4 not regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05426	3E-28		0.6146	[0.51-0.72] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05419	4E-16		0.4625	[0.35-0.57] unit increase	Illumina [18335935] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05426	3E-20		0.5156	[0.41-0.62] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05426	2E-26		0.592	[0.48-0.7] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD45RA- CD4 not regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05444	7E-28		0.6113	[0.5-0.72] unit increase	Illumina [18357036] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05754	1E-11		0.386	[0.27-0.5] unit increase	Illumina [17954496] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05754	2E-16		0.4562	[0.35-0.56] unit increase	Illumina [17954496] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05419	8E-9		0.3316	[0.22-0.44] unit increase	Illumina [18335935] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs61839660-T	0.05426	1E-13		0.4097	[0.3-0.52] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10p15.1	IL2RA	rs61839660-T	0.098328	3E-14		0.028656209	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p15.1	IL2RA	rs61839660-T	0.098318	5E-29		0.0422412	[0.035-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr10	6094696	6094697	rs61839660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p15.1	IL2RA	rs61839660-T	0.098316	3E-23		0.03769939	[0.03-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr10	6094696	6094697	rs61839660	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p15.1	NR	rs61839660-T	0.09897	1E-32		1.123	[1.103-1.144]	Affymetrix [15688218] (imputed)	N
631	chr10	6094696	6094697	rs61839660	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	10p15.1	IL2RA	rs61839660-T	0.1	6E-14		1.221	[1.161-1.284]	Affymetrix [15688218] (imputed)	N
631	chr10	6094696	6094697	rs61839660	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	10p15.1	NR	rs61839660-T	0.09897	3E-28		1.104	[1.085-1.123]	Affymetrix [15688218] (imputed)	N
631	chr10	6094696	6094697	rs61839660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p15.1		rs61839660-?	NR	4E-38				NR [~ 8900000] (imputed)	N
631	chr10	6094696	6094697	rs61839660	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	10p15.1	IL2RA, RBM17	rs61839660-?	NR	2E-11		1.12		NR [74888535] (imputed)	N
631	chr10	6094696	6094697	rs61839660	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	10p15.1	IL2RA, RBM17	rs61839660-?	NR	4E-12		1.12	[1.09-1.16]	Affymetrix [74888535] (imputed)	N
631	chr10	6094696	6094697	rs61839660	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p15.1	IL2RA	rs61839660-T	0.07	4E-19		1.08	[1.06-1.1]	Affymetrix, Illumina [8307659] (imputed)	N
631	chr10	6094696	6094697	rs61839660	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	10p15.1	IL2RA	rs61839660-?	NR	9E-6	(Hispanic)	1.64	[1.32-2.04]	Illumina [at least 5000000] (imputed)	N
631	chr10	6094696	6094697	rs61839660	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10p15.1	DKFZP667F0711, IL2RA, RBM17, PFKFB3, PRKCQ	rs61839660-?		2E-8				Illumina [9560910] (imputed)	N
631	chr10	6094696	6094697	rs61839660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10p15.1	IL2RA	rs61839660-T	0.0988	2E-10		0.03780895	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
631	chr10	6094696	6094697	rs61839660	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p15.1	IL2RA	rs61839660-?	NR	1E-15	(subset analysis)			Illumina [130052]	N
631	chr10	6094696	6094697	rs61839660	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	10p15.1	IL2RA	rs61839660-C	0.9	3E-39		1.6129031		Illumina [135870]	N
631	chr10	6094696	6094697	rs61839660	22293688	Huang J	2012-02-01	Eur J Hum Genet	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 1 diabetes	16,179 European ancestry individuals	NA	10p15.1	IL2RA	rs61839660-?	NR	5E-9		1.6	[1.44-1.76]	NR [6233112] (imputed)	N
631	chr10	6095409	6095410	rs2476491	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	10p15.1	IL2RA	rs2476491-?	NR	1E-6	(conditioned on rs7909519)	1.1904762		Illumina [123003]	N
631	chr10	6095927	6095928	rs12722497	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IL 2 receptor_alpha plasma levels	400 French ancestry individuals	NA	10p15.1		rs12722497-C	NR	2E-20		0.323	[0.26-0.38] pg/mL increase	Illumina [5201092] (imputed)	N
631	chr10	6095927	6095928	rs12722497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10p15.1		rs12722497-A	NR	3E-16		0.0368	[0.028-0.046] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
631	chr10	6095927	6095928	rs12722497	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	10p15.1	NR	rs12722497-?	NR	5E-7		0.0453	[0.028-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
631	chr10	6095927	6095928	rs12722497	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs12722497-?	NR	8E-16	(IL2RA)	0.841731	[0.64-1.05] unit increase	Illumina [11901634] (imputed)	N
631	chr10	6095927	6095928	rs12722497	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	IL2RA	rs12722497-C		2E-38		0.6279	[0.53-0.72] SD units decrease	NR [10700000] (imputed)	N
631	chr10	6096198	6096199	rs10795763	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	10p15.1	IL2RA	rs10795763-?	NR	2E-6		1.098901	[1.06-1.15]	Illumina [at least 5000000] (imputed)	N
631	chr10	6097282	6097283	rs12722495	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	10p15.1	IL2RA	rs12722495-A	NR	1E-38		1.61	[NR]	Affymetrix, Illumina [NR]	N
631	chr10	6098823	6098824	rs706779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10p15.1		rs706779-C	NR	3E-8		0.0963	[0.062-0.13] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
631	chr10	6098823	6098824	rs706779	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs706779-C	0.60842	7E-31		0.293	[0.24-0.34] unit decrease	Illumina [18238311] (imputed)	N
631	chr10	6098823	6098824	rs706779	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	10p15.1	IL2RA	rs706779-T	0.535	7E-27		1.29887	[1.23-1.37]	Illumina [8966411] (imputed)	N
631	chr10	6098823	6098824	rs706779	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	10p15.1	IL2RA	rs706779-A	0.533	2E-6		1.1764705	[1.1-1.25]	Illumina [103875]	N
631	chr10	6098823	6098824	rs706779	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	10p15.1	IL2RA	rs706779-A	0.533	3E-7		1.1764705	[1.1-1.25]	Illumina [103875]	N
631	chr10	6098823	6098824	rs706779	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	10p15.1	RBM17, IL2RA, PFKB3	rs706779-A	0.535	3E-9		1.27	[1.17-1.37]	Illumina [520460]	N
631	chr10	6098948	6098949	rs706778	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	10p15.1	IL2RA	rs706778-T	NR	1E-12		1.17	[1.12-1.22]	Illumina [7461261] (imputed)	N
631	chr10	6098948	6098949	rs706778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	10p15.1		rs706778-?	NR	4E-18				NR [~ 8900000] (imputed)	N
631	chr10	6098948	6098949	rs706778	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p15.1	IL2RA	rs706778-T	NR	2E-11		0.0788456	[0.013-0.145] unit increase	Illumina [8380626] (imputed)	N
631	chr10	6098948	6098949	rs706778	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p15.1	IL2RA	rs706778-T	0.4	7E-12	(EA)	0.10647	[0.076-0.137] unit increase	Illumina [8380626] (imputed)	N
631	chr10	6098948	6098949	rs706778	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	10p15.1	IL2RA	rs706778-T	0.41	6E-9				Illumina [7347414] (imputed)	N
631	chr10	6098948	6098949	rs706778	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	IL2RA	rs706778-T	0.45	5E-14		1.1	[1.07-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
631	chr10	6098948	6098949	rs706778	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	IL2RA	rs706778-T	0.4	5E-15	(EA)	1.12	[1.09-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
631	chr10	6098948	6098949	rs706778	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	10p15.1	IL2RA	rs706778-T	0.40	1E-11		1.14	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
631	chr10	6099044	6099045	rs2104286	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p15.1	IL2RA	rs2104286-?	NR	4E-8	(subset analysis)			Illumina [130052]	N
631	chr10	6099044	6099045	rs2104286	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	10p15.1	IL2RA	rs2104286-?		1E-6		1.19	[1.11-1.28]	Affymetrix, Illumina [1831729] (imputed)	N
631	chr10	6099044	6099045	rs2104286	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10p15.1	IL2RA	rs2104286-A	0.73	2E-47		1.22		Illumina [161311]	N
631	chr10	6099044	6099045	rs2104286	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	10p15.1	IL2RA	rs2104286-A	0.73	7E-6		1.16	[NR]	Illumina [302098]	N
631	chr10	6099044	6099045	rs2104286	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	10p15.1	IL2RA	rs2104286-T	0.76	9E-8		1.15	[1.04-1.27]	Affymetrix, Illumina [~ 2560000] (imputed)	N
631	chr10	6100724	6100725	rs3134883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10p15.1		rs3134883-G	0.698	2E-17				Affymetrix [10369434] (imputed)	N
631	chr10	6100724	6100725	rs3134883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10p15.1		rs3134883-G	0.698	2E-21				Affymetrix [10369434] (imputed)	N
631	chr10	6100724	6100725	rs3134883	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10p15.1		rs3134883-A	NR	2E-15		1.1	[1.08-1.13]	NR [13810676] (imputed)	N
631	chr10	6101128	6101129	rs3118469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	10p15.1		rs3118469-T	NR	4E-14		0.0803	[0.06-0.101] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
631	chr10	6101128	6101129	rs3118469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p15.1	IL2RA	rs3118469-T	0.30076	5E-10		0.014977853	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6101128	6101129	rs3118469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p15.1	IL2RA	rs3118469-T	0.30086	5E-25		0.025491789	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6101128	6101129	rs3118469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs3118469-T	0.290217	2E-43				Affymetrix, Illumina [23472807] (imputed)	N
631	chr10	6101128	6101129	rs3118469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p15.1	NR	rs3118469-T	0.299989	2E-45		0.029198	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
631	chr10	6101128	6101129	rs3118469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p15.1		rs3118469-?	NR	8E-10				NR [~ 8900000] (imputed)	N
631	chr10	6101712	6101713	rs3118470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	10p15.1	IL2RA	rs3118470-C	0.32	1E-10		1.175		Illumina [252970]	N
631	chr10	6101712	6101713	rs3118470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	10p15.1	IL2RA	rs3118470-C	0.318	1E-6		1.0899953		Illumina [252970]	N
631	chr10	6101712	6101713	rs3118470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	10p15.1	IL2RA	rs3118470-C	NA	6E-9				Illumina [252970]	N
631	chr10	6101712	6101713	rs3118470	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	10p15.1	IL15RA, IL2RA	rs3118470-C	NR	8E-21		1.41		Illumina [1233578] (imputed)	N
631	chr10	6101712	6101713	rs3118470	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p15.1	IL2RA	rs3118470-G	NR	3E-11		1.12	[1.1-1.13]	Illumina [465434]	N
631	chr10	6101712	6101713	rs3118470	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	10p15.1	IL2RA	rs3118470-G	0.30	2E-12		1.41	[1.27-1.56]	Illumina [463301]	N
631	chr10	6102011	6102012	rs12722489	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10p15.1	NR	rs12722489-?		3E-20	(IL2RA)	0.4172	[NR] unit decrease	Illumina [NR]	N
631	chr10	6102011	6102012	rs12722489	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	10p15.1	IL2RA	rs12722489-C	0.85	4E-8		1.23	[NR]	Affymetrix, Illumina [2529394]	N
631	chr10	6102011	6102012	rs12722489	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10p15.1	IL2RA	rs12722489-C	0.852	3E-9		1.11	[1.05-1.16]	Affymetrix, Illumina [953241] (imputed)	N
631	chr10	6102011	6102012	rs12722489	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	10p15.1	IL2RA	rs12722489-C	0.85	3E-8		1.25	[1.11-1.36]	Affymetrix [334923]	N
631	chr10	6102756	6102757	rs3118471	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10p15.1		rs3118471-A	0.698	1E-13				Affymetrix [10369434] (imputed)	N
631	chr10	6102756	6102757	rs3118471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p15.1	NR	rs3118471-G	0.299975	2E-11		0.013417	[0.0095-0.0173] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
631	chr10	6102756	6102757	rs3118471	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p15.1	IL2RA	rs3118471-?	NR	4E-13	(subset analysis)			Illumina [130052]	N
631	chr10	6103761	6103762	rs12722486	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	10p15.1	IL2RA	rs12722486-?		2E-9	(EA)	38.2	[NR]	Illumina [936149]	N
631	chr10	6106265	6106266	rs7072793	28100725	Chen J	2017-01-18	Neurology	Genome-wide association study identifies MAPT locus influencing human plasma tau levels.	Plasma t-tau levels	463 European ancestry Alzheimer's disease cases, 163 European ancestry individuals with mild cognitive impairment, 151 European ancestry individuals	360 individuals, 27 individuals later diagnosed with mild cognitive impairment	10p15.1	IL2RA	rs7072793-?	0.393	8E-6	(European)			Illumina [316802]	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10745	2E-43		0.5555	[0.48-0.63] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10745	2E-43		0.5626	[0.48-0.64] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10745	9E-48		0.5734	[0.5-0.65] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD24- B cell	3,649 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10727	5E-20		0.3718	[0.29-0.45] unit increase	Illumina [18236139] (imputed)	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10755	2E-31		0.476	[0.4-0.56] unit increase	Illumina [18238340] (imputed)	N
631	chr10	6106620	6106621	rs41294937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41294937-C	0.10763	2E-32		0.4838	[0.4-0.56] unit increase	Illumina [18238700] (imputed)	N
631	chr10	6108339	6108340	rs10795791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p15.1		rs10795791-A	0.587	6E-13				Affymetrix [10369434] (imputed)	N
631	chr10	6108339	6108340	rs10795791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p15.1	IL2RA	rs10795791-G	0.4125	5E-9		0.013207783	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6108339	6108340	rs10795791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p15.1	IL2RA	rs10795791-G	0.412465	5E-13		0.016358685	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6108339	6108340	rs10795791	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	10p15.1	IL2RA	rs10795791-G	0.41	6E-11	(conditioned rs61839660)	1.16		Illumina [135870]	N
631	chr10	6108339	6108340	rs10795791	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	10p15.1	IR2RA	rs10795791-G	0.58	1E-10		1.1111112	[1.08-1.14]	Illumina [133816] (imputed)	N
631	chr10	6108339	6108340	rs10795791	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	10p15.1	IL2RA	rs10795791-G	0.4	1E-9		1.1047	(Immunochip only)	Illumina [129464] (imputed)	N
631	chr10	6108339	6108340	rs10795791	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	10p15.1	IL2RA	rs10795791-G	0.4	1E-9		1.0921	(Immunochip only)	Illumina [129464] (imputed)	N
631	chr10	6108438	6108439	rs4147359	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	10p15.1	IL2RA	rs4147359-A	0.36	8E-17		1.22	[1.16-1.28]	Affymetrix, Illumina [7891602] (imputed)	N
631	chr10	6108438	6108439	rs4147359	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	10p15.1	IL2RA	rs4147359-A	0.349	8E-17		1.24	[1.18-1.30]	Illumina [140322] (imputed)	N
631	chr10	6110828	6110829	rs7090512	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p15.1	IL2RA	rs7090512-G	NR	5E-20	(Conditioned on rs3118470)	1.19	[1.17-1.21]	Illumina [465434]	N
631	chr10	6110874	6110875	rs7090530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	10p15.1		rs7090530-A	NR	1E-21		0.0842	[0.067-0.101] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
631	chr10	6110874	6110875	rs7090530	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	10p15.1	IL2RA	rs7090530-A	0.603	2E-26		1.098901	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
631	chr10	6110874	6110875	rs7090530	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10p15.1	IL2RA	rs7090530-C	0.395908	7E-24		0.09397718	[0.076-0.112] unit decrease	Affymetrix [7288503] (imputed)	N
631	chr10	6110874	6110875	rs7090530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10p15.1		rs7090530-?	NR	5E-19				NR [~ 8900000] (imputed)	N
631	chr10	6111074	6111075	rs7893324	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs7893324-C	0.15624	1E-15		0.2816	[0.21-0.35] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6111074	6111075	rs7893324	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p15.1	NR	rs7893324-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
631	chr10	6113781	6113782	rs1887027	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs1887027-T	0.2456	8E-48		0.4047	[0.35-0.46] unit decrease	Illumina [18238311] (imputed)	N
631	chr10	6113781	6113782	rs1887027	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs1887027-T	0.2456	1E-51		0.4203	[0.37-0.47] unit decrease	Illumina [18238311] (imputed)	N
631	chr10	6113781	6113782	rs1887027	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs1887027-T	0.2456	2E-45		0.3962	[0.34-0.45] unit decrease	Illumina [18238311] (imputed)	N
631	chr10	6113781	6113782	rs1887027	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs1887027-T	0.2456	8E-53		0.4244	[0.37-0.48] unit decrease	Illumina [18238311] (imputed)	N
631	chr10	6114009	6114010	rs10905716	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10p15.1	IL2RA, RBM17	rs10905716-?		3E-9	(EA, conditioned on rs7911500, rs791590 and rs8177757)			Illumina [2200000] (imputed)	N
631	chr10	6114292	6114293	rs10752194	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	10p15.1	NR	rs10752194-A		2E-6		0.184	[0.11-0.26] unit decrease	Illumina [12764477] (imputed)	N
631	chr10	6114855	6114856	rs10905718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10p15.1	RP11-414H17.2	rs10905718-G	0.310938	2E-10		0.01542613	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr10	6114855	6114856	rs10905718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p15.1	RP11-414H17.2	rs10905718-G	0.310913	5E-10		0.015163175	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
631	chr10	6114855	6114856	rs10905718	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	10p15.1	IL2RA	rs10905718-?	NR	4E-6		1.12	[1.07-1.17]	Illumina [at least 5000000] (imputed)	N
631	chr10	6115170	6115171	rs10905719	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs10905719-A	0.20816	5E-8		0.1734	[0.11-0.24] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6115170	6115171	rs10905719	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs10905719-A	0.20816	7E-9		0.1841	[0.12-0.25] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6115170	6115171	rs10905719	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD45RA+ CD4 not regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs10905719-A	0.20828	3E-14		0.2281	[0.17-0.29] unit increase	Illumina [18357036] (imputed)	N
631	chr10	6115638	6115639	rs62626322	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	10p15.1		rs62626322-G	0.1159	6E-19		1.16		Affymetrix, Illumina [9397031] (imputed)	N
631	chr10	6115638	6115639	rs62626322	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p15.1	RBM17	rs62626322-G	0.112377	4E-8		1.0558746	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
631	chr10	6115638	6115639	rs62626322	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p15.1	NR	rs62626322-?	NR	3E-9	(conditional)			Affymetrix [15688218] (imputed)	N
631	chr10	6115677	6115678	rs62626323	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs62626323-A	0.10747	2E-13		0.2969	[0.22-0.38] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6115677	6115678	rs62626323	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs62626323-A	0.10747	1E-40		0.5433	[0.46-0.62] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6115677	6115678	rs62626323	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs62626323-A	0.10736	4E-18		0.349	[0.27-0.43] unit increase	Illumina [18238289] (imputed)	N
631	chr10	6115677	6115678	rs62626323	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs62626323-A	0.10747	1E-47		0.5847	[0.51-0.66] unit increase	Illumina [18238311] (imputed)	N
631	chr10	6116253	6116254	rs72776098	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	10p15.1	RPL32P23	rs72776098-?	0.975	6E-9		1.6363933		Illumina [252970]	N
631	chr10	6116253	6116254	rs72776098	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	10p15.1	IL2RA	rs72776098-A	NA	7E-10				Illumina [252970]	N
631	chr10	6117321	6117322	rs11256593	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p15.1	IL2RA	rs11256593-T	NR	3E-65		1.2062	NR	Affymetrix, Illumina [8278136] (imputed)	N
631	chr10	6118126	6118127	rs7079460	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium S felsineum abundance in stool	5,959 Finnish ancestry individuals	NA	10p15.1		rs7079460-T	0.146624	2E-8		0.0466598	[0.03-0.063] unit decrease	Illumina [7980478] (imputed)	N
631	chr10	6120172	6120173	rs41295093	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD27- B cell	3,651 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41295093-A	0.10657	4E-15		0.3186	[0.24-0.4] unit increase	Illumina [18236953] (imputed)	N
631	chr10	6120172	6120173	rs41295093	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38- B cell	3,642 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs41295093-A	0.1067	1E-25		0.4244	[0.35-0.5] unit increase	Illumina [18233845] (imputed)	N
631	chr10	6121284	6121285	rs62626325	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10p15.1	IL2RA, RBM17	rs62626325-G	0.83	9E-6		1.1	[1.05-1.15]	Illumina [161311]	N
631	chr10	6122008	6122009	rs11594656	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10p15.1		rs11594656-A	NR	4E-9	(conditional on rs3134883)	0.1	[0.067-0.133] unit decrease	NR [13810676] (imputed)	N
631	chr10	6122668	6122669	rs2182410	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	10p15.1	IL2RA	rs2182410-?		4E-9		1.1904762		Illumina [at least 8143088] (imputed)	N
631	chr10	6123494	6123495	rs12251307	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	10p15.1	IL2RA	rs12251307-?	NR	1E-13				Affymetrix, Illumina [841622] (imputed)	N
631	chr10	6123494	6123495	rs12251307	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	10p15.1	IL2RA	rs12251307-T	NR	2E-6				Affymetrix [up to 335565]	N
631	chr10	6124620	6124621	rs41295115	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	10p15.1	RBM17, IL2RA	rs41295115-C		5E-7		1.2769	[1.18-1.37]	Illumina [up to 4972397] (imputed)	N
631	chr10	6129309	6129310	rs75641219	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10p15.1	NR	rs75641219-T	0.994972	3E-8		0.0769511	[0.05-0.104] unit increase	Affymetrix [15000001]	N
631	chr10	6129642	6129643	rs41295121	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	10p15.1	IL2RA	rs41295121-C	0.99	5E-8	(conditioned rs61839660, rs10795791)	2.0408163		Illumina [135870]	N
631	chr10	6134868	6134869	rs1571025	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs1571025-G	0.17661	1E-12		0.2422	[0.18-0.31] unit increase	Illumina [18353565] (imputed)	N
631	chr10	6149036	6149037	rs12778662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p15.1	NR	rs12778662-T	NR	1E-14		0.0349	[0.026-0.044] unit increase	Affymetrix [9000000] (imputed)	N
631	chr10	6149036	6149037	rs12778662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p15.1	NR	rs12778662-T	NR	2E-19		0.0407	[0.032-0.05] unit increase	Affymetrix [9000000] (imputed)	N
631	chr10	6149036	6149037	rs12778662	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Midgestational cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	10p15.1	IL2R	rs12778662-T	0.07	4E-9	(sIL2R-alpha)	0.65	[0.43-0.87] unit increase	Affymetrix [629686]	N
631	chr10	6151103	6151104	rs397897345	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs397897345-AT	0.6634	9E-10		0.1691	[0.12-0.22] unit decrease	Illumina [18353565] (imputed)	N
632	chr10	6164309	6164310	rs1073646	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Brooding (response to stress)	1,758 European ancestry individuals	NA	10p15.1	RBM17	rs1073646-C	NR	3E-6		0.09663	unit increase	Illumina [3474641] (imputed)	N
632	chr10	6166143	6166150	rs376742174	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	10p15.1		rs376742174-?	NR	1E-6				Illumina [7401356] (imputed)	N
632	chr10	6167123	6167124	rs10905856	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD4+ T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p15.1		rs10905856-T	0.09587	3E-9		0.2571	[0.17-0.34] unit increase	Illumina [18353565] (imputed)	N
632	chr10	6167123	6167124	rs10905856	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10p15.1		rs10905856-?	NR	5E-6		2.28	[1.53-3.41]	Illumina [6778521] (imputed)	N
632	chr10	6169139	6169140	rs11256909	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	10p15.1	PFKFB3	rs11256909-A	NR	1E-6	(men)	0.23	[0.14-0.32] unit increase	Illumina [5527232] (imputed)	N
632	chr10	6171634	6171635	rs5014463	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Post-traumatic stress disorder	1,698 Peruvian cases, 1,716 Peruvian controls	NA	10p15.1	NR	rs5014463-?		5E-6		1.3347571	[NR]	NR [3389129] (imputed)	N
632	chr10	6173692	6173693	rs7924005	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10p15.1	LOC101928080, RBM17	rs7924005-?		4E-10	(EA, conditioned on on rs7911500, rs791590, rs8177757 and rs10905716)			Illumina [2200000] (imputed)	N
632	chr10	6173776	6173777	rs10905875	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10p15.1	IL2RA, PFKFB3	rs10905875-C		1E-6		1.34	[NR]	Illumina [up to 9464381] (imputed)	N
632	chr10	6178613	6178614	rs1983890	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes	2,634 European ancestry cases, 5,947 European ancestry controls	345 European ancestry cases, 1,664 European ancestry controls	10p15.1	PFKFB3	rs1983890-C	0.642	3E-8		1.2302363	[1.14396450049362-1.32301382549448]	Affymetrix, Illumina [7868002] (imputed)	N
632	chr10	6186120	6186121	rs77793921	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	10p15.1		rs77793921-?	NR	1E-6				Illumina [7401356] (imputed)	N
632	chr10	6208010	6208011	rs186003188	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	10p15.1	NR	rs186003188-T	NR	1E-7		3.219	[2.09-4.96]	Illumina [13976150] (imputed)	N
632	chr10	6209217	6209218	rs2182409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	10p15.1		rs2182409-C	0.716707	3E-9		0.0266467	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
632	chr10	6213263	6213264	rs184694238	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs184694238-?	NR	4E-11	(IL2RA)	0.938212	[0.66-1.22] unit increase	Illumina [11901634] (imputed)	N
632	chr10	6228225	6228226	rs666595	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	10p15.1	PFKFB3	rs666595-G	0.6853	6E-6		1.3267878	[1.20-1.45]	Illumina [500508]	N
632	chr10	6229573	6229574	rs631902	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	10p15.1	PFKFB3	rs631902-A	NR	5E-6		1.17527		Illumina [1233578] (imputed)	N
632	chr10	6231784	6231785	rs186795497	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	10p15.1	NR	rs186795497-G		3E-7		0.7243	[0.45-1] SD units decrease	NR [10700000] (imputed)	N
632	chr10	6237155	6237156	rs11257188	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		10p15.1	PFKFB3	rs11257188-?	NR	9E-6		2.19	[NR]	Illumina [up to 810372] (imputed)	N
632	chr10	6278310	6278311	rs113152482	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	10p15.1	PFKFB3	rs113152482-?	NR	8E-7				Illumina [2668805]	N
632	chr10	6281081	6281082	rs11257492	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	10p15.1	NR	rs11257492-A		6E-6		0.683	[0.39-0.98] unit decrease	Illumina [12764477] (imputed)	N
633	chr10	6315793	6315794	rs7077335	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10p15.1	intergenic	rs7077335-?	0.011	2E-12			[NR]	Affymetrix, Illumina [152234]	N
633	chr10	6341682	6341683	rs185254058	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10p15.1	NR	rs185254058-?	NR	1E-10	(IL2RA)	0.797936	[0.56-1.04] unit increase	Illumina [11901634] (imputed)	N
633	chr10	6390191	6390192	rs2387397	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	10p15.1	PFKFB3, PRKCQ	rs2387397-?	0.771	2E-8		1.1363636		Illumina [139553]	N
633	chr10	6390449	6390450	rs947474	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	10p15.1	AL137145.1	rs947474-?	0.8	2E-7		1.115237		Illumina [252970]	N
633	chr10	6390449	6390450	rs947474	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	10p15.1	AL137145.1	rs947474-?		2E-7		1.1307374		Illumina [252970]	N
633	chr10	6390449	6390450	rs947474	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	10p15.1	PRKCQ	rs947474-G	NA	1E-8				Illumina [252970]	N
633	chr10	6390449	6390450	rs947474	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p15.1	PRKCQ	rs947474-A	NR	3E-8		0.0694472	[-0.006-0.1449] unit increase	Illumina [8380626] (imputed)	N
633	chr10	6390449	6390450	rs947474	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p15.1	PRKCQ	rs947474-A	0.81	3E-9	(EA)	0.11882	[0.08-0.158] unit increase	Illumina [8380626] (imputed)	N
633	chr10	6390449	6390450	rs947474	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	10p15.1	PRKCQ, RP11-563J2.2	rs947474-?	NR	8E-11		0.89		Illumina [109572]	N
633	chr10	6390449	6390450	rs947474	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	10p15.1	PRKCQ	rs947474-A	0.82	1E-8		1.1235955	[1.09-1.18]	Illumina [133816] (imputed)	N
633	chr10	6390449	6390450	rs947474	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	PRKCQ	rs947474-A	0.83	4E-10		1.11	[1.07-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
633	chr10	6390449	6390450	rs947474	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p15.1	PRKCQ	rs947474-A	0.81	3E-10	(EA)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
633	chr10	6390449	6390450	rs947474	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	10p15.1	PRKCQ	rs947474-G	0.19	4E-9		1.1	[1.03-1.18]	Affymetrix [up to 335565]	N
633	chr10	6391060	6391061	rs2181622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	10p15.1		rs2181622-?	NR	6E-11				NR [~ 8900000] (imputed)	N
633	chr10	6393008	6393009	rs744253	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10p15.1	AL137145.1	rs744253-A	0.258633	4E-15		0.08149793	[0.061-0.102] unit decrease	Affymetrix [7288503] (imputed)	N
633	chr10	6393259	6393260	rs4750316	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	10p15.1	PRKCQ	rs4750316-G	0.81	2E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2716259] (imputed)	N
633	chr10	6393259	6393260	rs4750316	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	10p15.1	PRKCQ	rs4750316-G	0.20	4E-6		1.14	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
633	chr10	6401624	6401625	rs4558075	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	10p15.1	PFKFB3, PRKCQ	rs4558075-?	NR	2E-7		1.37	[1.22-1.54]	Illumina [517345]	N
633	chr10	6405533	6405534	rs11258303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10p15.1		rs11258303-?	NR	7E-13				NR [~ 8900000] (imputed)	N
633	chr10	6407736	6407737	rs11258317	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10p15.1	NR	rs11258317-?	NR	6E-6		1.2306	[NR]	Affymetrix [722112]	N
634	chr10	6448893	6448894	rs586511	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10p15.1	PRKCQ	rs586511-G	0.264667	4E-9		0.060740463	[0.041-0.081] unit increase	Affymetrix [7288503] (imputed)	N
634	chr10	6460994	6460995	rs11258664	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	10p15.1	PRKCQ	rs11258664-T	0.28	2E-6		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
634	chr10	6472890	6472891	rs11258747	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	10p15.1	PRKCQ	rs11258747-?	NR	1E-7				Affymetrix, Illumina [841622] (imputed)	N
634	chr10	6489651	6489652	rs688391	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	10p15.1	PRKCQ	rs688391-?	NR	1E-6	(dominant model)		NR	Illumina [445723]	N
634	chr10	6506696	6506697	rs629229	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p15.1	NR	rs629229-G	0.01045	1E-8	(POLR2H)	0.00151	NR unit increase	Illumina [1671387] (imputed)	N
634	chr10	6516090	6516091	rs626748	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p15.1	PFKFB3	rs626748-?	NR	5E-6	(pyridoxate)	0.20587815	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
634	chr10	6517166	6517167	rs502919	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10p15.1		rs502919-T	NR	6E-10		0.92	[0.9-0.94]	NR [13810676] (imputed)	N
634	chr10	6527142	6527143	rs2236379	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p15.1	PRKCQ	rs2236379-?	NR	9E-9	(subset analysis)			Illumina [130052]	N
634	chr10	6531487	6531488	rs41284445	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10p15.1		rs41284445-T	NR	8E-6		1.13508		Affymetrix, Illumina [62056310] (imputed)	N
635	chr10	6572224	6572225	rs11259403	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	10p15.1	PRKCQ	rs11259403-C	0.33	7E-6	(adult)			Illumina [up to 536451]	N
635	chr10	6596331	6596332	rs56810982	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	10p15.1		rs56810982-A	NR	8E-6		1.94	[1.45-2.59]	Affymetrix [NR] (imputed)	N
635	chr10	6606540	6606541	rs4748153	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p15.1	PRKCQ	rs4748153-?		3E-8	(Hispanic)			Illumina [NR]	N
635	chr10	6621772	6621773	rs943451	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	10p15.1	PRKCQ, PFKFB3, SFMBT2	rs943451-T	0.318	8E-14		1.125	[1.091-1.161]	Affymetrix [10894596] (imputed)	N
635	chr10	6621772	6621773	rs943451	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10p15.1	PRKCQ	rs943451-?	NR	4E-15		1.063	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
635	chr10	6621772	6621773	rs943451	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p15.1	PRKCQ	rs943451-T	NR	5E-10		1.047	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
635	chr10	6622093	6622094	rs11259670	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	10p15.1		rs11259670-T	0.6843	5E-11		0.92		Affymetrix, Illumina [9397031] (imputed)	N
635	chr10	6625377	6625378	rs2255088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p15.1		rs2255088-?	NR	1E-9				NR [~ 8900000] (imputed)	N
635	chr10	6625377	6625378	rs2255088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p15.1		rs2255088-?	NR	7E-11				NR [~ 8900000] (imputed)	N
635	chr10	6626213	6626214	rs41284471	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p15.1	PRKCQ-AS1, PRKCQ, LOC101928150, LINC00706, LINC00707, LOC399715	rs41284471-A	0.2007	4E-8		1.04438	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
635	chr10	6626213	6626214	rs41284471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p15.1	NR	rs41284471-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
635	chr10	6627699	6627700	rs10796303	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p15.1	NR	rs10796303-T	0.3323	1E-9		1.039	[1.027-1.051]	Affymetrix [15688218] (imputed)	N
635	chr10	6628223	6628224	rs61841332	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p15.1	NR	rs61841332-?	NR	1E-10	(conditional)			Affymetrix [15688218] (imputed)	N
635	chr10	6628223	6628224	rs61841332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p15.1		rs61841332-?	NR	1E-10				NR [~ 8900000] (imputed)	N
635	chr10	6628333	6628334	rs10906913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p15.1	PRKCQ-AS1	rs10906913-A	0.666368	1E-10		0.015170829	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr10	6629862	6629862	rs111828205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p15.1	PRKCQ-AS1	rs111828205-TAA	0.667982	2E-10		0.014903281	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr10	6631222	6631223	rs10737105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p15.1	NR	rs10737105-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
635	chr10	6631587	6631588	rs10906926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p15.1	NR	rs10906926-G	0.211216	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
636	chr10	6753855	6753856	rs7086011	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	10p14		rs7086011-?	NR	2E-6		0.1928714	[0.11-0.27] unit decrease	Illumina [9906551] (imputed)	N
636	chr10	6753855	6753856	rs7086011	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	10p14		rs7086011-?	NR	9E-7		0.2108151	[0.13-0.29] unit decrease	Illumina [9901720] (imputed)	N
636	chr10	6788712	6788713	rs1348307	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	10p14	LINC00706	rs1348307-?	NR	4E-6				Illumina [2668805]	N
636	chr10	6789462	6789463	rs12570744	23555300	Cui J	2013-03-28	PLoS Genet	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	Up to 2,706 European ancestry cases	NA	10p14	NR	rs12570744-T	0.17	2E-7	(infliximab, delta-DAS analysis)	0.49	[NR] unit decrease	Affymetrix, Illumina [~ 2000000] (imputed)	N
636	chr10	6791033	6791034	rs7094310	25271088	Singh A	2014-10-01	Eur J Hum Genet	Gene by stress genome-wide interaction analysis and path analysis identify EBF1 as a cardiovascular and metabolic risk gene.	Hip circumference (psychosocial stress interaction)	2,460 European ancestry individuals, 548 Chinese ancestry individuals,   1,547 African American individuals, 1,250 Hispanic individuals	3,157 European ancestry individuals	10p14	intergenic	rs7094310-?	NR	2E-6	(Hispanics)			Affymetrix [528298]	N
637	chr10	6833092	6833093	rs10508313	33993232	Carmona EG	2021-05-16	Rheumatology (Oxford)	Identification of a shared genetic risk locus for Kawasaki disease and IgA vasculitis by a cross-phenotype meta-analysis.	Kawasaki disease or immunoglobulin A vasculitis (pleiotropy)	402 European ancestry Kawasaki disease cases, 215 European ancestry IgAV cases, 7,538 European ancestry controls	186 East Asian ancestry Kawasaki disease cases, 600 East Asian ancestry controls, 384 IgAV European or unknown ancestry cases, 3,126 European or unknown ancestry controls	10p14		rs10508313-C	NR	1E-7				Illumina [5690841] (imputed)	N
637	chr10	6838848	6838849	rs2892347	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	10p14	LOC439949	rs2892347-?		3E-10				Affymetrix, Illumina [2374420] (imputed)	N
637	chr10	6838848	6838849	rs2892347	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	10p14	SFMBT2	rs2892347-T	NR	3E-7				Affymetrix, Illumina [12061510] (imputed)	N
637	chr10	6838848	6838849	rs2892347	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	10p14	SFMBT2	rs2892347-T	NR	6E-8		0.09	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
637	chr10	6847027	6847028	rs138967337	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL158210.2	rs138967337-?	NR	3E-12	(female)	4.29367	[NR] unit increase	Affymetrix [NR] (imputed)	N
637	chr10	6898218	6898219	rs7091821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p14		rs7091821-?	NR	1E-9				NR [~ 8900000] (imputed)	N
637	chr10	6924443	6924444	rs11816922	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p14	intergenic	rs11816922-A	0.08	5E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
637	chr10	6946262	6946263	rs6602217	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10p14	intergenic	rs6602217-T		2E-6	(Modelling analysis)	1.12	[1.07-1.17]	NR [1252901] (imputed)	N
637	chr10	6946751	6946752	rs2501677	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10p14	SFMBT2	rs2501677-A	0.9178	3E-6		3.454E-4	[-0.00178-0.00247] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
638	chr10	6956477	6956478	rs10795523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10p14	RP11-799O21.2	rs10795523-C	0.333436	2E-9		0.0133658	[0.0091-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr10	6956477	6956478	rs10795523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10p14	RP11-799O21.2	rs10795523-C	0.333416	3E-9		0.013945733	[0.0094-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr10	6956712	6956713	rs12416288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs12416288-T	0.278455	6E-10				Affymetrix, Illumina [24246363] (imputed)	N
638	chr10	6956712	6956713	rs12416288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10p14		rs12416288-?	NR	2E-10				NR [~ 8900000] (imputed)	N
638	chr10	6961628	6961629	rs12416190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs12416190-A	0.280509	9E-13				Affymetrix, Illumina [20825802] (imputed)	N
638	chr10	6961930	6961931	rs35453021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10p14	NR	rs35453021-C	0.258525	1E-11		0.014969	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
638	chr10	6962419	6962420	rs4998333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10p14		rs4998333-T	NR	3E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
638	chr10	6962622	6962623	rs10905064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	10p14		rs10905064-A	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
638	chr10	7021455	7021456	rs142995266	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p14	intergenic	rs142995266-T	0.00797020219423285	3E-6	(G_Ruminococcus_HB)	1.67835	[0.97-2.38] unit decrease	Illumina [7711310] (imputed)	N
638	chr10	7031143	7031144	rs7083345	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	10p14	RP11-554I8.2	rs7083345-T	NR	3E-9	(Lactobacillales order)	0.24	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
638	chr10	7031143	7031144	rs7083345	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	10p14	RP11-554I8.2	rs7083345-T	NR	3E-10	(Bacilli class)	0.25	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
638	chr10	7070569	7070570	rs9943451	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p14	NR	rs9943451-?	NR	3E-6	(Latino)	1.1339	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
639	chr10	7085656	7085657	rs2892380	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	10p14	NR	rs2892380-?	NR	9E-6		0.7486	[0.62-0.88]	Illumina [NR] (imputed)	N
639	chr10	7089015	7089016	rs10905099	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	10p14	NR	rs10905099-?	NR	8E-6	(CP)	3.45	[1.92-6.25]	Illumina [NR]	N
639	chr10	7092948	7092949	rs7098118	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p14	NR	rs7098118-A	0.493	9E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
639	chr10	7096991	7096992	rs117733511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs117733511-A	0.0122	2E-10	(PLD3)	0.02994	NR unit increase	Illumina [1671387] (imputed)	N
639	chr10	7098471	7098472	rs118055686	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs118055686-G	0.01568	7E-9	(PLD3)	0.02393	NR unit increase	Illumina [1671387] (imputed)	N
640	chr10	7215981	7215982	rs72773845	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	10p14	NR	rs72773845-T	0.07	4E-6		0.382	[0.22-0.54] unit decrease	Illumina [5418572] (imputed)	N
640	chr10	7216978	7216979	rs2497442	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p14	NR	rs2497442-?	NR	2E-6	(EA)	0.9057	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
640	chr10	7250345	7250346	rs7920332	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	10p14	SFMBT2	rs7920332-C		7E-6		1.27	[1.14-1.42]	Illumina [10258281] (imputed)	N
640	chr10	7263208	7263209	rs11255043	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p14	NR	rs11255043-?	NR	5E-8				Illumina [7760689] (imputed)	N
640	chr10	7314439	7314440	rs7082321	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	10p14	NR	rs7082321-?	NR	1E-6		1.1424168	[1.08-1.21]	Affymetrix, Illumina [~ 10400000] (imputed)	N
640	chr10	7316840	7316841	rs7091482	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	10p14		rs7091482-A	NR	9E-6		1.55	[1.28-1.88]	Illumina [7591411] (imputed)	N
640	chr10	7320945	7320946	rs145009935	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	10p14		rs145009935-?	NR	2E-9		3.266	[2.2-4.33] unit increase	Affymetrix [NR] (imputed)	N
640	chr10	7329103	7329104	rs143868530	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SFMBT2	rs143868530-?	NR	9E-10		3.69345	[NR] unit decrease	Affymetrix [NR] (imputed)	N
641	chr10	7388271	7388272	rs12776707	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p14	ITIH5	rs12776707-?	NR	4E-6	(TAG 48:4)	1.2905537	[0.74-1.84] unit decrease	Affymetrix [at least 2500000] (imputed)	N
641	chr10	7452742	7452743	rs2245569	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	10p14		rs2245569-G	0.213	6E-8		1.27	[1.17-1.38]	Illumina [24006246] (imputed)	N
641	chr10	7452742	7452743	rs2245569	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p14		rs2245569-?	NR	2E-11				NR [~ 8900000] (imputed)	N
641	chr10	7466137	7466138	rs2249836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p14		rs2249836-G	NR	1E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
642	chr10	7471542	7471543	rs4748917	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	10p14	NR	rs4748917-A	0.1035	4E-6		0.6122	[0.13-1.09] unit increase	Illumina [at least 567677] (imputed)	N
642	chr10	7562044	7562045	rs112246048	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	10p14	NR	rs112246048-?		4E-6		4.998	[3.14-6.86] unit increase	Illumina [~ 4900000] (imputed)	N
643	chr10	7607266	7607266	rs149562316	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	NR	rs149562316-GTA	0.736	5E-17	(Inter-alpha-trypsin inhibitor heavy chain H5, ITIH5.8233.2.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
643	chr10	7621874	7621875	rs36056263	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	NR	rs36056263-G	0.009	4E-22	(Inter-alpha-trypsin inhibitor heavy chain H5, ITIH5.8233.2.3)	1.28	[1.03-1.53] unit decrease	Affymetrix [10572788] (imputed)	N
643	chr10	7622008	7622009	rs41298373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p14		rs41298373-A	0.11	3E-64		16.92	z score increase	Affymetrix [9061022] (imputed)	N
643	chr10	7622008	7622009	rs41298373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p14		rs41298373-A	0.11	5E-22		9.65	z score increase	Affymetrix [9061022] (imputed)	N
643	chr10	7622008	7622009	rs41298373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p14		rs41298373-A	0.11	1E-30		11.52	z score increase	Affymetrix [9061022] (imputed)	N
643	chr10	7622008	7622009	rs41298373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p14	NR	rs41298373-A	0.1011	1E-17				NR [9056863] (imputed)	N
643	chr10	7622008	7622009	rs41298373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p14	NR	rs41298373-A	0.1011	1E-17				NR [9056863] (imputed)	N
643	chr10	7622008	7622009	rs41298373	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	10p14	ITIH5	rs41298373-A	0.1	5E-38				NR [9312144] (imputed)	N
643	chr10	7622008	7622009	rs41298373	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10p14	FOXP1	rs41298373-?		5E-30				NR [7428630] (imputed)	N
643	chr10	7622008	7622009	rs41298373	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p14	ITIH5	rs41298373-?		7E-28				NR [7428630] (imputed)	N
643	chr10	7622008	7622009	rs41298373	31887566	Carrion-Castillo A	2019-11-29	Cortex	Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment.	Planum temporale asymmetry index	18,049 British ancestry individuals	NA	10p14	ITIH5	rs41298373-A	0.101	2E-15		7.9478	NR unit increase	Affymetrix [15120452] (imputed)	N
643	chr10	7622008	7622009	rs41298373	31887566	Carrion-Castillo A	2019-11-29	Cortex	Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment.	Left planum temporale grey matter volume	18,037 British ancestry individuals	NA	10p14	NR	rs41298373-A	0.101	6E-10		6.1817	NR unit increase	Affymetrix [15120452] (imputed)	N
643	chr10	7622008	7622009	rs41298373	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	NR	rs41298373-A	0.1	1E-27	(Inter-alpha-trypsin inhibitor heavy chain H5, ITIH5.8233.2.3)	0.45	[0.37-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
643	chr10	7652420	7652421	rs12572683	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p14	ITIH5	rs12572683-A	0.77421875	9E-12	(ITIH5, 8233_2_3)	0.20201775	[0.14-0.26] unit increase	Illumina [> 1000000] (imputed)	N
643	chr10	7677415	7677416	rs17142881	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cytidine analogues (gemcitabine)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10p14		rs17142881-?	NR	8E-8				Illumina [1510701]	N
643	chr10	7700708	7700709	rs7909223	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH5	rs7909223-G	0.748	2E-29	(Inter-alpha-trypsin inhibitor heavy chain H5, ITIH5.8233.2.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
644	chr10	7736903	7736904	rs11255291	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	10p14	ITIH2	rs11255291-?		2E-6	(FSH levels - AA)			Affymetrix [677261]	N
644	chr10	7740904	7740905	rs73621225	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p14	NR	rs73621225-T	0.93265625	4E-39	(ITIH1, 7955_195_3)	0.6356893	[0.54-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr10	7740904	7740905	rs73621225	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p14	NR	rs73621225-T	0.93265625	2E-26	(NPPB, 10387_1_3)	0.5063009	[0.41-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr10	7740904	7740905	rs73621225	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p14	NR	rs73621225-T	0.93265625	1E-142	(ITIH2, 9326_33_3)	1.1807392	[1.09-1.27] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr10	7740904	7740905	rs73621225	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p14	NR	rs73621225-T	0.93265625	1E-13	(SIRT2, 5030_52_1)	0.36167592	[0.27-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr10	7743780	7743781	rs113808467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC24	5,366 Icelandic ancestry individuals	NA	10p14		rs113808467-C	0.03068	4E-15		0.418115	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7744226	7744227	rs59814098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT2	5,353 Icelandic ancestry individuals	NA	10p14		rs59814098-T	0.05295	2E-26		0.4301	[0.35-0.51] unit increase	Illumina [7506463] (imputed)	N
644	chr10	7744226	7744227	rs59814098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPB	5,360 Icelandic ancestry individuals	NA	10p14		rs59814098-T	0.05295	9E-42		0.556507	[0.48-0.64] unit increase	Illumina [7506463] (imputed)	N
644	chr10	7745020	7745021	rs73621240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH2	5,364 Icelandic ancestry individuals	NA	10p14		rs73621240-A	0.06895	2E-272		1.18218	[1.12-1.25] unit increase	Illumina [7506463] (imputed)	N
644	chr10	7745020	7745021	rs73621240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH1	5,363 Icelandic ancestry individuals	NA	10p14		rs73621240-A	0.06895	8E-59		0.589031	[0.52-0.66] unit increase	Illumina [7506463] (imputed)	N
644	chr10	7749597	7749598	rs113889195	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH1	5,363 Icelandic ancestry individuals	NA	10p14		rs113889195-T	0.03112	3E-26		0.568494	[0.46-0.67] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7749597	7749598	rs113889195	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDHR3	5,363 Icelandic ancestry individuals	NA	10p14		rs113889195-T	0.03112	9E-15		0.414144	[0.31-0.52] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7749597	7749598	rs113889195	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C15orf48	5,347 Icelandic ancestry individuals	NA	10p14		rs113889195-T	0.03112	6E-19		0.431588	[0.34-0.53] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7749597	7749598	rs113889195	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGGF1	5,363 Icelandic ancestry individuals	NA	10p14		rs113889195-T	0.03112	8E-18		0.452138	[0.35-0.56] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7753088	7753089	rs4298806	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH2	rs4298806-G	0.062	2E-27	(Inter-alpha-trypsin inhibitor heavy chain H1, ITIH1.7955.195.3)	0.55	[0.45-0.65] unit increase	Affymetrix [10572788] (imputed)	N
644	chr10	7761744	7761745	rs111844913	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH2	rs111844913-C	0.057	1E-16	(Protocadherin beta-2, PCDHB2.10748.216.3)	0.45	[0.35-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr10	7764232	7764233	rs6602268	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT2	5,353 Icelandic ancestry individuals	NA	10p14		rs6602268-G	0.03121	2E-84		0.988799	[0.89-1.09] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7766580	7766581	rs80167373	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH2	rs80167373-A	0.058	1E-13	(AP-4 complex subunit mu-1, AP4M1.10076.1.3)	0.4	[0.3-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr10	7769805	7769806	rs41290289	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH2	rs41290289-C	0.056	2E-12	(Arylamine N-acetyltransferase 1, NAT1.12632.14.3)	0.38	[0.28-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr10	7772034	7772035	rs35524242	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	10p14		rs35524242-A	0.94	1E-239		0.7799	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
644	chr10	7772034	7772035	rs35524242	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p14	ITIH2	rs35524242-G	0.056	7E-52	(NAD-dependent protein deacetylase sirtuin-2, SIRT2.5030.52.1)	0.8	[0.7-0.9] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr10	7773281	7773282	rs79432761	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AP4M1	5,359 Icelandic ancestry individuals	NA	10p14		rs79432761-G	0.03925	2E-12		0.334638	[0.24-0.43] unit decrease	Illumina [7506463] (imputed)	N
644	chr10	7774090	7774091	rs2298318	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRT23	5,351 Icelandic ancestry individuals	NA	10p14		rs2298318-G	0.04889	1E-14		0.319745	[0.24-0.4] unit increase	Illumina [7506463] (imputed)	N
644	chr10	7800159	7800160	rs11255343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p14	KIN	rs11255343-T	0.118878	5E-10		0.021769244	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
644	chr10	7841810	7841811	rs139967528	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	10p14	ATP5C1	rs139967528-G	NR	6E-10		6.119662	[3.45-10.9]	Illumina [241551]	N
645	chr10	7866556	7866557	rs1244471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p14		rs1244471-C	NR	6E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
645	chr10	7866556	7866557	rs1244471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p14		rs1244471-?	NR	4E-10				NR [~ 8900000] (imputed)	N
645	chr10	7867545	7867546	rs1244475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs1244475-T	0.588653	6E-10				Affymetrix, Illumina [24332387] (imputed)	N
645	chr10	7876829	7876830	rs10508336	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p14	NR	rs10508336-?	NR	3E-6	(AA)	49.17	[46.39-51.95]	Illumina [905956]	N
645	chr10	7877887	7877888	rs80050647	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (4 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	10p14		rs80050647-?	NR	5E-6				Illumina [1365315]	N
645	chr10	7887620	7887621	rs11255400	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p14	NR	rs11255400-G	0.931314253351327	7E-6	(IGP2)	0.2863	[0.16-0.41] unit increase	Illumina [~ 2500000] (imputed)	N
645	chr10	7888394	7888395	rs11255401	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	10p14		rs11255401-T	0.93	3E-17		0.1855	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
645	chr10	7913057	7913058	rs10752118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p14	NR	rs10752118-T	0.431861	2E-10		0.011925	[0.0083-0.0156] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
645	chr10	7918700	7918701	rs74554559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74554559-A	0.0453	8E-9	(FKBP1A)	0.01612	NR unit increase	Illumina [1671387] (imputed)	N
645	chr10	7918700	7918701	rs74554559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74554559-A	0.0453	6E-10	(GSN)	0.0284	NR unit increase	Illumina [1671387] (imputed)	N
645	chr10	7918700	7918701	rs74554559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74554559-A	0.0453	5E-10	(PKM)	0.2867	NR unit increase	Illumina [1671387] (imputed)	N
645	chr10	7918700	7918701	rs74554559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74554559-A	0.0453	2E-8	(TPM4)	0.06692	NR unit increase	Illumina [1671387] (imputed)	N
645	chr10	7918700	7918701	rs74554559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74554559-A	0.0453	1E-8	(TMSB4X)	0.1306	NR unit increase	Illumina [1671387] (imputed)	N
645	chr10	7930472	7930475	rs150032261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p14	TAF3	rs150032261-A	0.416441	2E-9		0.013529461	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
646	chr10	8008082	8008083	rs76743768	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs76743768-A	0.04355	3E-8	(FKBP1A)	0.01588	NR unit increase	Illumina [1671387] (imputed)	N
646	chr10	8008082	8008083	rs76743768	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs76743768-A	0.04355	2E-10	(GSN)	0.02958	NR unit increase	Illumina [1671387] (imputed)	N
646	chr10	8008082	8008083	rs76743768	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs76743768-A	0.04355	1E-8	(PKM)	0.2703	NR unit increase	Illumina [1671387] (imputed)	N
646	chr10	8017780	8017781	rs74421449	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPB	5,360 Icelandic ancestry individuals	NA	10p14		rs74421449-G	0.01114	4E-9		0.526826	[0.35-0.7] unit decrease	Illumina [7506463] (imputed)	N
646	chr10	8017780	8017781	rs74421449	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH2	5,364 Icelandic ancestry individuals	NA	10p14		rs74421449-G	0.01114	2E-7		0.474013	[0.3-0.65] unit decrease	Illumina [7506463] (imputed)	N
646	chr10	8019123	8019124	rs10795584	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	10p14		rs10795584-?	NR	4E-6		0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
646	chr10	8078245	8078246	rs7091365	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	10p14		rs7091365-?	NR	3E-6		0.943623	[0.92-0.97]	NR [685523]	N
646	chr10	8088653	8088654	rs263424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	10p14	NR	rs263424-C	NR	1E-13		0.0233	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
646	chr10	8088653	8088654	rs263424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs263424-C	NR	3E-13		0.0229	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
646	chr10	8089135	8089136	rs4143094	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	10p14	GATA3, GATA-AS1	rs4143094-T	0.21-0.27	9E-9	(Processed meat)	1.17	[1.11-1.23]	Affymetrix, Illumina [> 2700000] (imputed)	N
646	chr10	8091376	8091377	rs1244181	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10p14	GATA3	rs1244181-G		5E-8		1.369863	[NR]	Illumina [up to 9464381] (imputed)	N
646	chr10	8093033	8093034	rs501764	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	10p14	NR	rs501764-C	0.19	4E-10		1.39	[NR]	Illumina [296129]	N
646	chr10	8093033	8093034	rs501764	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	10p14	GATA3	rs501764-C	0.19	7E-8		1.25	[1.15-1.36]	Illumina [504374]	N
646	chr10	8095339	8095340	rs2275806	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10p14		rs2275806-A	NR	3E-9		0.93	[0.91-0.95]	NR [13810676] (imputed)	N
646	chr10	8095339	8095340	rs2275806	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	10p14	RP11-379F12.3	rs2275806-G	0.427595	4E-11		0.061035343	[0.043-0.079] unit increase	Affymetrix [7288503] (imputed)	N
646	chr10	8095339	8095340	rs2275806	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	10p14	GATA3	rs2275806-G	0.41	5E-8		1.11	(Immunochip only)	Illumina [129464] (imputed)	N
646	chr10	8095339	8095340	rs2275806	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	10p14	GATA3	rs2275806-G	0.41	7E-8				Illumina [129464] (imputed)	N
646	chr10	8098718	8098719	rs1399180	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p14	GATA3	rs1399180-C	NR	7E-11		1.1015642	NR	Affymetrix, Illumina [8278136] (imputed)	N
646	chr10	8100124	8100125	rs3824667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10p14		rs3824667-G	NR	1E-16		0.0251	[0.019-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
646	chr10	8100124	8100125	rs3824667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs3824667-G	0.839039	4E-23				Affymetrix, Illumina [23472807] (imputed)	N
646	chr10	8100124	8100125	rs3824667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p14	NR	rs3824667-G	0.826614	2E-24		0.026568	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
646	chr10	8100124	8100125	rs3824667	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10p14	NR	rs3824667-A	0.172864	3E-8		0.0141513	[0.0092-0.0192] unit decrease	Affymetrix [15000001]	N
646	chr10	8100128	8100128	rs139687546	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10p14	NR	rs139687546-?	NR	3E-6		0.0544	[0.031-0.077] unit increase	Illumina [at least 560000] (imputed)	N
646	chr10	8101426	8101427	rs3781094	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs3781094-?	NR	2E-8	(conditional)			Affymetrix [15688218] (imputed)	N
646	chr10	8101426	8101427	rs3781094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p14		rs3781094-?	NR	5E-8				NR [~ 8900000] (imputed)	N
646	chr10	8101426	8101427	rs3781094	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	10p14	GATA3	rs3781094-A	0.34	1E-9		1.11	[1.07-1.14]	Illumina [133816] (imputed)	N
646	chr10	8101926	8101927	rs3781093	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	10p14	GATA3	rs3781093-T	0.86	9E-13		1.39	[1.28-1.53]	Illumina [> 10000000] (imputed)	N
646	chr10	8101926	8101927	rs3781093	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	10p14	GATA3	rs3781093-T	0.86	5E-12		1.28	[1.19-1.37]	Illumina [> 10000000] (imputed)	N
646	chr10	8102271	8102272	rs3802604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10p14		rs3802604-A	NR	2E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
646	chr10	8102271	8102272	rs3802604	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	10p14	GATA3	rs3802604-C	0.38	2E-8		1.24	[1.15-1.33]	Illumina [787224] (imputed)	N
646	chr10	8102271	8102272	rs3802604	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	10p14	GATA3	rs3802604-G	0.359	2E-8		1.0991052		Illumina [252970]	N
646	chr10	8102271	8102272	rs3802604	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	10p14	GATA3	rs3802604-G	NA	5E-8				Illumina [252970]	N
646	chr10	8102271	8102272	rs3802604	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	10p14	GATA3	rs3802604-G	NR	4E-6		1.1085		Illumina [129464] (imputed)	N
646	chr10	8102498	8102498	rs35945472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10p14	GATA3	rs35945472-CT	0.815783	4E-10		0.01806266	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr10	8102498	8102498	rs35945472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p14	GATA3	rs35945472-CT	0.815778	7E-17		0.024026794	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
646	chr10	8102498	8102498	rs35945472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p14	GATA3	rs35945472-CT	0.815783	7E-20		0.026225781	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
646	chr10	8103058	8103059	rs477771	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs477771-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	10p14	GATA3	rs3824662-A	0.19	4E-14		1.29	[1.21-1.38]	Affymetrix, Illumina [~ 6118121] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	10p14	GATA3	rs3824662-?	NR	2E-10		1.34	[1.22-1.47]	Illumina [6755715] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia in young adulthood	160 European ancestry cases, 3,027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	6E-6		1.9	[1.1-3.3]	Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia in adulthood	152 European ancestry cases, 3,027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	2E-7		2.2	[1.1-4.0]	Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (normal cytogenetics)	193 European ancestry cases, 3027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	1E-8				Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (hyperdiploid negative)	410 European ancestry cases, 3027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	3E-13				Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (abnormal cytogenetics)	253 European ancestry cases, 3,027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	2E-7				Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (Philadelphia chromosome negative)	333 European ancestry cases, 3,027 European ancestry controls	NA	10p14	GATA3	rs3824662-A	0.2	1E-12				Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	Acute lymphoblastic leukemia (B-cell precursor)	272 European ancestry male cases, 174 European ancestry female cases, 2,098 European ancestry male controls, 929 European ancestry female controls	NA	10p14	GATA3	rs3824662-A	0.2	3E-13		1.9	[1.3-2.7]	Illumina [~ 8500000] (imputed)	N
646	chr10	8104207	8104208	rs3824662	25468567	Perez-Andreu V	2014-12-02	Blood	A genome-wide association study of susceptibility to acute lymphoblastic leukemia in adolescents and young adults.	Acute lymphoblastic leukemia (adolescents and young adults)	99 European ancestry cases, 1,381 European ancestry controls, 15 African American cases, 1,363 African American controls, 76 Hispanic cases, 1,008 Hispanic controls, 118 other ancestry cases, 2,909 other ancestry controls	72 European ancestry cases, 3,667 European ancestry controls, 9 African American cases, 1,076 African American controls, 34 Hispanic cases, 501 Hispanic controls, 47 other ancestry cases, 511 other ancestry controls	10p14	GATA3	rs3824662-A	0.20	3E-10		1.77	[1.48-2.12]	Affymetrix [635297]	N
646	chr10	8104207	8104208	rs3824662	23996088	Migliorini G	2013-08-30	Blood	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	10p14	GATA3	rs3824662-T	0.17	9E-12		1.31	[1.21-1.41]	Illumina [382776] (imputed)	N
646	chr10	8104340	8104341	rs11255504	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	10p14	GATA3	rs11255504-T	0.166	8E-10		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
646	chr10	8104340	8104341	rs11255504	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3	rs11255504-T	NR	1E-8		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
646	chr10	8104721	8104722	rs3824660	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p14	GATA3	rs3824660-T	NR	3E-8		0.063978	[0.001-0.1269] unit decrease	Illumina [8380626] (imputed)	N
646	chr10	8104721	8104722	rs3824660	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p14	GATA3	rs3824660-T	0.61	4E-9	(EA)	0.09765	[0.065-0.13] unit decrease	Illumina [8380626] (imputed)	N
646	chr10	8104721	8104722	rs3824660	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	GATA3	rs3824660-C	0.39	3E-9	(EA)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
646	chr10	8104721	8104722	rs3824660	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	GATA3	rs3824660-C	0.38	2E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
646	chr10	8106458	8106459	rs570730	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs570730-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
646	chr10	8108381	8108382	rs537544	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	10p14	GATA3	rs537544-T	0.615565	9E-9		0.08641077	[0.057-0.116] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
646	chr10	8110023	8110024	rs444929	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	10p14	GATA3	rs444929-C	0.21	3E-6		1.26	[1.15-1.39]	Affymetrix, Illumina [1004829] (imputed)	N
646	chr10	8114387	8114388	rs3802597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14	GATA3	rs3802597-G	0.578457	2E-21		0.021457138	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr10	8114387	8114388	rs3802597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14	GATA3	rs3802597-G	0.578437	4E-19		0.020092413	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr10	8114387	8114388	rs3802597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs3802597-?	NR	3E-25				NR [~ 8900000] (imputed)	N
646	chr10	8114921	8114922	rs7087058	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	GATA3, GATA3-AS1	rs7087058-G	0.17197	1E-8		1.0475199	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
646	chr10	8115361	8115362	rs10905284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	10p14	NR	rs10905284-C	0.496333	3E-10		0.030666	[0.021-0.04] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
646	chr10	8115361	8115362	rs10905284	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	10p14		rs10905284-A	NR	5E-11		0.8991948	[0.871085637578549-0.928210976350825]	Illumina [8919992] (imputed)	N
646	chr10	8115361	8115362	rs10905284	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	10p14	GATA3	rs10905284-C	0.433	4E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [up to 37123566] (imputed)	N
646	chr10	8115361	8115362	rs10905284	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	10p14	GATA3	rs10905284-C	0.4294	2E-10		1.1111112	[1.08-1.14]	Affymetrix [33771858] (imputed)	N
646	chr10	8115361	8115362	rs10905284	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p14	GATA3	rs10905284-A	0.5749	7E-9		0.02106087	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
646	chr10	8118676	8118677	rs498490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10p14		rs498490-T	NR	3E-20		0.0261	[0.021-0.032] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
646	chr10	8118676	8118677	rs498490	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10p14	NR	rs498490-T	0.1661	9E-19		0.002636	[0.002-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
646	chr10	8120142	8120143	rs477461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs477461-G	NR	1E-16		0.0296	[0.023-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
647	chr10	8127138	8127139	rs12412241	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	10p14	Intergenic	rs12412241-A	0.2962	3E-6		0.5474	[0.32-0.78] unit decrease	Illumina [500508]	N
647	chr10	8150712	8150713	rs10508343	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	10p14	intergenic	rs10508343-A	NR	8E-6		3.81	[1.40-10.40]	Affymetrix [476796]	N
648	chr10	8259267	8259268	rs2799839	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10p14	NR	rs2799839-?	NR	3E-7		742.2507	NR unit decrease	Illumina [2379855]	N
648	chr10	8287239	8287240	rs17465422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs17465422-A	0.064407	5E-10		0.027994245	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
648	chr10	8287239	8287240	rs17465422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs17465422-?	NR	2E-12				NR [~ 8900000] (imputed)	N
648	chr10	8287596	8287597	rs2486294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p14		rs2486294-?	NR	8E-10				NR [~ 8900000] (imputed)	N
648	chr10	8314043	8314044	rs17143387	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	10p14	GATA3	rs17143387-?	NR	4E-8				Illumina [9143600] (imputed)	N
648	chr10	8324888	8324889	rs11255615	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	10p14	LOC100507143	rs11255615-G	0.38	5E-6	(Allelic)	2.4	[1.65-3.53]	Illumina [555600]	N
648	chr10	8353100	8353101	rs1999874	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	10p14	LINC00708, GATA3	rs1999874-A	0.376984127	7E-15		0.04229039	[0.032-0.053] unit increase	Illumina [up to 9350000] (imputed)	N
648	chr10	8388317	8388318	rs7075481	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma androstenedione levels in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	10p14	LOC100507143	rs7075481-G	0.1279	8E-7		0.3776	[0.23-0.53] pg/mL increase	Illumina [8203257] (imputed)	N
649	chr10	8391223	8391224	rs10795620	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	10p14	Intergenic	rs10795620-G	NR	7E-6	(women)	0.0214696	[0.012-0.031] unit decrease	Illumina [13520550] (imputed)	N
649	chr10	8399120	8399121	rs7084131	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	10p14	GATA3	rs7084131-A		3E-6		4.686	[NR] (Z score) increase	Illumina [7614484] (imputed)	N
649	chr10	8399120	8399121	rs7084131	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	10p14	GATA3	rs7084131-?		5E-6	(French Canadians)	6.23842		Illumina [7614484] (imputed)	N
649	chr10	8407568	8407569	rs2935682	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	10p14	NR	rs2935682-G	0.64	5E-7		0.82	[NR]	Affymetrix [87696888] (imputed)	N
649	chr10	8407821	8407822	rs58726672	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	10p14	GATA3	rs58726672-C	0.98	5E-6		0.57	[0.32-0.82] unit increase	Illumina [7411206] (imputed)	N
649	chr10	8422616	8422617	rs10905353	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p14	LINC00708	rs10905353-G	NR	3E-6		1.0566	NR	Affymetrix, Illumina [8278136] (imputed)	N
649	chr10	8445397	8445398	rs75645834	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	10p14		rs75645834-A	0.0113771	4E-8		0.0570392	[0.037-0.077] unit increase	Illumina [7980478] (imputed)	N
649	chr10	8447802	8447803	rs2152962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10p14		rs2152962-?	NR	2E-8				NR [~ 8900000] (imputed)	N
649	chr10	8449890	8449891	rs10905359	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10p14	NR	rs10905359-A	0.378669	3E-9		0.0188901	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
649	chr10	8449890	8449891	rs10905359	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	10p14	LINC00708, GATA3, GATA3-AS	rs10905359-A	0.6	5E-9		1.3157895	[1.2-1.45]	Illumina [792342]	N
649	chr10	8450088	8450089	rs142347570	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	10p14	NR	rs142347570-G	NR	7E-6		1.7342		Affymetrix [8183964] (imputed)	N
649	chr10	8450354	8450355	rs72773323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs72773323-?	NR	4E-10				NR [~ 8900000] (imputed)	N
649	chr10	8460664	8460665	rs6602301	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs6602301-?	NR	9E-10	(conditional)			Affymetrix [15688218] (imputed)	N
649	chr10	8460962	8460963	rs7100961	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LINC00708, GATA3, GATA3-AS1, TAF3, ATP5C1, KIN	rs7100961-T	0.31085	1E-6		1.03339	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
649	chr10	8463114	8463115	rs2646424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10p14	RP11-543F8.2	rs2646424-C	0.326099	4E-26		0.025178026	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr10	8464204	8464205	rs563592774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10p14	RP11-543F8.2	rs563592774-A	0.3171	7E-14		0.02900944	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr10	8464204	8464205	rs563592774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10p14	RP11-543F8.2	rs563592774-A	0.3171	2E-11		0.02620274	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr10	8465202	8465203	rs2485713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p14		rs2485713-C	NR	1E-26		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
649	chr10	8465202	8465203	rs2485713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p14	NR	rs2485713-C	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
649	chr10	8465202	8465203	rs2485713	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10p14	RP11-543F8.2	rs2485713-C	0.3754	5E-17		0.03108267	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr10	8467036	8467037	rs2646420	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10p14		rs2646420-C	0.619	3E-15				Affymetrix [10369434] (imputed)	N
649	chr10	8467036	8467037	rs2646420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p14	RP11-543F8.2	rs2646420-T	0.380312	9E-30		0.025988327	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr10	8467154	8467155	rs2646421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs2646421-C	0.357257	2E-38				Affymetrix, Illumina [23467995] (imputed)	N
649	chr10	8467154	8467155	rs2646421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10p14	NR	rs2646421-C	0.377773	3E-41		0.02609	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
649	chr10	8470386	8470387	rs2646425	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	10p14	LINC00708, LOC105376398	rs2646425-T	0.31	4E-10		0.028	NR unit increase	Illumina [9591901] (imputed)	N
649	chr10	8471609	8471610	rs2388714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14	RP11-543F8.2	rs2388714-C	0.32969	2E-11		0.015901294	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr10	8472426	8472427	rs3923121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10p14		rs3923121-C	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
649	chr10	8479867	8479868	rs7090925	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	10p14	GATA3	rs7090925-A		9E-8		1.13	[1.08-1.18]	Illumina [644674]	N
649	chr10	8490611	8490612	rs67733649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p14		rs67733649-?	NR	3E-9				NR [~ 8900000] (imputed)	N
649	chr10	8510956	8510957	rs7099257	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	10p14	GATA3, SFTA1P	rs7099257-T	0.409	6E-7		1.037	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
649	chr10	8510956	8510957	rs7099257	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs7099257-T	NR	7E-12		1.049	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
649	chr10	8512381	8512382	rs10795631	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	10p14		rs10795631-T	0.66	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
649	chr10	8513623	8513624	rs7091181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p14		rs7091181-?	NR	2E-14				NR [~ 8900000] (imputed)	N
649	chr10	8515347	8515348	rs12785018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs12785018-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
649	chr10	8515347	8515348	rs12785018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs12785018-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
649	chr10	8515347	8515348	rs12785018	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	Intergenic	rs12785018-T	0.338949	1E-10		1.0430869	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
650	chr10	8526618	8526619	rs7094182	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	10p14	Intergenic	rs7094182-?	NR	5E-12				Affymetrix [up to 8274727] (imputed)	N
650	chr10	8536673	8536674	rs60057223	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	10p14	NR	rs60057223-?	NR	1E-8			[NR]	NR [1665663]	N
650	chr10	8554504	8554505	rs72775230	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	10p14	intergenic	rs72775230-?	NR	8E-6		1.35126	[1.18372-1.542512]	Illumina [at least 4756722] (imputed)	N
650	chr10	8559742	8559743	rs1544301	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LINC00708, GATA3, GATA3-AS1, TAF3, LOC101928272, ATP5C1	rs1544301-G	0.64941	1E-8		1.0384755	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
650	chr10	8561426	8561427	rs11816084	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	10p14	intergenic	rs11816084-?	NR	3E-6		1.363621	[1.197078-1.553335]	Illumina [at least 4756772] (imputed)	N
650	chr10	8565100	8565101	rs2646392	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	10p14	LINC00708, LOC105755953	rs2646392-A		2E-6		0.239	[0.14-0.34] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
650	chr10	8565989	8565990	rs2477923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs2477923-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
650	chr10	8565989	8565990	rs2477923	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	Intergenic	rs2477923-T	0.536599	6E-13		1.0463531	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
650	chr10	8570627	8570628	rs17143938	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung cancer (survival time) in never smokers	1,569 European ancestry individuals	887 Japanese ancestry individuals	10p14	intergenic	rs17143938-T	NR	6E-7	(EA)	0.58	[0.47-0.72]	Illumina [629283] (imputed)	N
650	chr10	8572040	8572041	rs2646428	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	10p14	NR	rs2646428-?	NR	5E-6		0.1167	[0.066-0.167] unit decrease	Illumina [at least 560000] (imputed)	N
650	chr10	8575582	8575583	rs11592436	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	10p14	LINC00708, LOC105376398	rs11592436-G	0.170732149286593	7E-13		0.0432	[0.031-0.055] SD increase	Illumina [22400000] (imputed)	N
650	chr10	8576205	8576206	rs4749779	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10p14	intergenic	rs4749779-A	0.7382	4E-9		0.0158	[0.011-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
650	chr10	8578341	8578342	rs1830951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p14	intergenic	rs1830951-A	0.4715	2E-12		0.0252227	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr10	8582316	8582317	rs1409123	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	10p14		rs1409123-?	NR	9E-12		0.93	[0.92-0.95]	Illumina [5170515] (imputed)	N
650	chr10	8582316	8582317	rs1409123	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	10p14	GATA3	rs1409123-?	NR	2E-10		1.0638298	[1.04-1.09]	Affymetrix [74888535] (imputed)	N
650	chr10	8591368	8591369	rs7894791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p14		rs7894791-C	0.587	3E-13				Affymetrix [10369434] (imputed)	N
650	chr10	8591368	8591369	rs7894791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs7894791-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
650	chr10	8591368	8591369	rs7894791	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs7894791-?	NR	5E-9	(conditional)			Affymetrix [15688218] (imputed)	N
650	chr10	8591368	8591369	rs7894791	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	10p14	GATA3, CELF2	rs7894791-C	0.587	9E-11		1.103	[1.071-1.137]	Affymetrix [10894596] (imputed)	N
650	chr10	8591368	8591369	rs7894791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs7894791-?	NR	8E-28				NR [~ 8900000] (imputed)	N
650	chr10	8595838	8595839	rs10795656	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	10p14	GATA3	rs10795656-?	NR	4E-10		1.05		NR [74888535] (imputed)	N
650	chr10	8595838	8595839	rs10795656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p14	intergenic	rs10795656-A	0.2747	4E-11		0.02654644	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
650	chr10	8595838	8595839	rs10795656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10p14	intergenic	rs10795656-A	0.2746	2E-11		0.02686992	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr10	8595838	8595839	rs10795656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10p14	intergenic	rs10795656-A	0.2747	6E-14		0.03000632	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
650	chr10	8595838	8595839	rs10795656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10p14	intergenic	rs10795656-A	0.2746	4E-12		0.02792931	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
650	chr10	8605076	8605076	rs141147061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs141147061-TAC	0.416871	1E-21		0.02260331	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr10	8605076	8605076	rs141147061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs141147061-TAC	0.416862	1E-22		0.023191866	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr10	8605552	8605553	rs11255753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p14		rs11255753-?	NR	3E-9				NR [~ 8900000] (imputed)	N
650	chr10	8605552	8605553	rs11255753	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs11255753-T	0.26	2E-12		1.041	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
650	chr10	8606013	8606014	rs17144046	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10p14	GATA3, SFTA1P	rs17144046-?	NR	3E-15		1.066	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
650	chr10	8606013	8606014	rs17144046	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs17144046-G	NR	4E-12		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
650	chr10	8606013	8606014	rs17144046	28656603	Na R	2017-06-28	Prostate	A genetic variant near GATA3 implicated in inherited susceptibility and etiology of benign prostatic hyperplasia (BPH) and lower urinary tract symptoms (LUTS).	Benign prostatic hyperplasia and/or lower urinary tract symptoms	1,419 European ancestry cases, 498 cases, 1,684 European ancestry controls, 518 controls	485 Finnish ancestry cases, 475 Finnish ancestry controls	10p14	GATA3	rs17144046-G	NR	9E-7		1.41	NR	Illumina [at least 7852412] (imputed)	N
650	chr10	8633860	8633861	rs4749791	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	LOC338591	rs4749791-A	0.469	8E-6	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
650	chr10	8645162	8645163	rs9787692	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	10p14	GATA3	rs9787692-?	NR	7E-7	(adjusted for dose, GFR & AST)	3.672	unit increase (EA, Australian cohort)	Illumina [610255]	N
651	chr10	8663874	8663875	rs12217641	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10p14	GATA3	rs12217641-C	0.6981	8E-6	(conditioned on lead SNPs in LD)	1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
651	chr10	8665146	8665147	rs4454616	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	10p14	NR	rs4454616-?	NR	9E-6	(EA)	3.06	[1.86-5.00]	NR [341191]	N
651	chr10	8682179	8682180	rs11255790	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	10p14	GATA3	rs11255790-T	0.3	3E-10		0.039	[0.027-0.051] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
651	chr10	8682678	8682679	rs7083359	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	10p14	LOC105376398, LOC105755953	rs7083359-T	0.302980504319631	1E-10		0.0318	[0.022-0.042] SD decrease	Illumina [22400000] (imputed)	N
651	chr10	8686903	8686904	rs10795666	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	10p14	NR	rs10795666-G	NR	9E-6		0.189	[0.11-0.27] unit decrease	Illumina [6319684] (imputed)	N
651	chr10	8689002	8689003	rs827405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	10p14		rs827405-C	NR	8E-9		0.136	[0.09-0.182] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
651	chr10	8689002	8689003	rs827405	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	10p14	RN5S299	rs827405-T	0.20682	1E-9		0.14733423	[0.1-0.195] unit increase	Affymetrix [7288503] (imputed)	N
651	chr10	8697127	8697128	rs74433033	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p14	NR	rs74433033-A	0.0332	9E-7	(EA)	0.09	[0.054-0.126] unit increase	Illumina [~ 11800000] (imputed)	N
651	chr10	8701218	8701219	rs10795668	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10p14	GATA3	rs10795668-G	NR	1E-23	(East Asian)	1.14	[1.11-1.17]	Affymetrix, Illumina [up to 47000000] (imputed)	N
651	chr10	8701218	8701219	rs10795668	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	10p14	GATA3	rs10795668-G	0.61	5E-24		1.14	[1.11-1.17]	Affymetrix, Illumina [up to 10700000] (imputed)	N
651	chr10	8701218	8701219	rs10795668	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10p14	NR	rs10795668-G	0.6	5E-15		1.15	[1.11-1.19]	Affymetrix, Illumina [~ 4000000] (imputed)	N
651	chr10	8701218	8701219	rs10795668	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	10p14	intergenic	rs10795668-G	0.6	5E-15	(East Asian)	1.15	[1.11-1.19]	Affymetrix, Illumina [2400000] (imputed)	N
651	chr10	8701218	8701219	rs10795668	18372905	Tomlinson IP	2008-03-30	Nat Genet	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls	10p14	intergenic	rs10795668-A	0.67	3E-13		1.12	[1.10-1.16]	Illumina [547647]	N
651	chr10	8718003	8718004	rs9733843	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	10p14		rs9733843-G	0.383615307	1E-14		0.8701625	[0.840056322-0.901347604]	Illumina [8919992] (imputed)	N
651	chr10	8718003	8718004	rs9733843	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10p14	NR	rs9733843-A	NR	1E-14		1.142	[1.104-1.181]	Illumina [6774630] (imputed)	N
651	chr10	8719268	8719269	rs827382	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p14	intergenic	rs827382-C	0.25	9E-8		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
651	chr10	8731254	8731255	rs7912831	28869801	Takahashi Y	2017-09-04	Cancer Sci	Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.	Colorectal cancer	529 Japanese ancestry cases, 521 Japanese ancestry controls	1,269 Japanese ancestry cases, 2,104 Japanese ancestry controls	10p14	GATA3, CUGBP2	rs7912831-?		9E-8		1.27	[1.16-1.39]	Affymetrix [280972]	N
651	chr10	8734760	8734761	rs7894531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10p14		rs7894531-A	0.379058067	3E-17		0.14465919	[0.11-0.18] unit decrease	Illumina [13428297] (imputed)	N
651	chr10	8734760	8734761	rs7894531	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10p14		rs7894531-?	0.64	3E-28	(East Asian)	1.1627907	[1.12-1.19]	Affymetrix, Illumina [up to 47000000] (imputed)	N
651	chr10	8734760	8734761	rs7894531	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	10p14	NR	rs7894531-G	NR	4E-24		1.13	[1.10-1.15]	Affymetrix, Illumina [> 10000000] (imputed)	N
651	chr10	8735743	8735744	rs12358150	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	10p14		rs12358150-?	NR	1E-13	(Colorectal polyp)	0.91	[0.89-0.93]	Illumina [NR] (imputed)	N
651	chr10	8735743	8735744	rs12358150	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	10p14		rs12358150-?	NR	1E-13		0.87	[0.84-0.9]	Illumina [NR] (imputed)	N
651	chr10	8738284	8738285	rs72777082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10p14		rs72777082-A	NR	7E-23		0.1257	[0.1-0.15] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
651	chr10	8738284	8738285	rs72777082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	10p14		rs72777082-A	NR	2E-14		0.0749	[0.056-0.094] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
651	chr10	8739579	8739580	rs11255841	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10p14	GATA3	rs11255841-T	0.703	2E-21		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
651	chr10	8739579	8739580	rs11255841	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	10p14	NR	rs11255841-T	0.691	3E-12	(EA)	1.098901	[1.06-1.12]	Affymetrix, Illumina [12931465] (imputed)	N
651	chr10	8739579	8739580	rs11255841	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10p14	LOC338591	rs11255841-T	0.614	2E-14		1.17	[1.123-1.219]	Illumina [6774630] (imputed)	N
651	chr10	8739579	8739580	rs11255841	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	10p14	GATA3	rs11255841-T	0.68	4E-13		1.18	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
651	chr10	8739579	8739580	rs11255841	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	10p14	GATA3	rs11255841-T	0.68	7E-11		1.19	[NR]	Illumina [NR] (imputed)	N
651	chr10	8777639	8777640	rs10795672	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs10795672-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
651	chr10	8777639	8777640	rs10795672	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	10p14	GATA3, SFTA1P	rs10795672-?	NR	1E-12		1.054	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
651	chr10	8777639	8777640	rs10795672	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs10795672-A	NR	2E-15		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
651	chr10	8777691	8777692	rs10508366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs10508366-?	NR	5E-21				NR [~ 8900000] (imputed)	N
652	chr10	8798181	8798182	rs11255903	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10p14	LOC105755953	rs11255903-A	0.744417	1E-8		0.0134927	[0.0088-0.0182] unit increase	NR [16516521] (imputed)	N
652	chr10	8802911	8802912	rs11255908	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10p14		rs11255908-T	0.743	2E-10		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
652	chr10	8802911	8802912	rs11255908	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10p14	GATA3	rs11255908-T	0.7437	2E-10		0.01461856	[0.01-0.019] unit decrease	Affymetrix [11514654] (imputed)	N
652	chr10	8802911	8802912	rs11255908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10p14		rs11255908-?	NR	2E-11				NR [~ 8900000] (imputed)	N
652	chr10	8803550	8803551	rs10905461	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10p14	GATA3	rs10905461-T	0.257	2E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
652	chr10	8803550	8803551	rs10905461	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p14	NR	rs10905461-C	0.748	2E-12		0.00869987	[0.0063-0.0111] unit decrease	NR [9732723] (imputed)	N
652	chr10	8803550	8803551	rs10905461	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p14	NR	rs10905461-C	0.748	2E-8		0.016391544	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
652	chr10	8820087	8820088	rs1334561	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	10p14	NR	rs1334561-?		3E-8				NR [520857]	N
652	chr10	8822787	8822788	rs11255918	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	10p14	NR	rs11255918-T	0.248	8E-9		0.010226	[0.0068-0.0137] unit increase	NR [9732723] (imputed)	N
652	chr10	8829619	8829620	rs7078430	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p14		rs7078430-C	0.741	1E-17		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
652	chr10	8831158	8831159	rs2182517	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	10p14	NR	rs2182517-T	0.243	3E-9		0.0151166	[0.01-0.02] unit increase	NR [9732723] (imputed)	N
652	chr10	8834693	8834694	rs72779066	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10p14	NR	rs72779066-C	0.238	7E-9		0.00998284	[0.0066-0.0134] unit decrease	NR [9732723] (imputed)	N
652	chr10	8837837	8837838	rs114408555	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10p14	intergenic	rs114408555-?	NR	9E-6		0.219	[0.099-0.339] unit decrease	Illumina [at least 13000000] (imputed)	N
652	chr10	8841668	8841669	rs2025758	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LOC101928272, LINC00709, LINC00708, GATA3, GATA3-AS1, TAF3	rs2025758-T	0.54318	2E-16		1.053319	[1.04-1.06]	Affymetrix [32463443] (imputed)	N
652	chr10	8841668	8841669	rs2025758	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs2025758-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
652	chr10	8841668	8841669	rs2025758	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	10p14	Intergenic	rs2025758-?	NR	5E-18				Affymetrix [up to 8274727] (imputed)	N
652	chr10	8841668	8841669	rs2025758	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	10p14	RP11-428L9.1	rs2025758-C	0.454005	6E-9		0.052923355	[0.035-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
652	chr10	8841668	8841669	rs2025758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p14		rs2025758-?	NR	6E-18				NR [~ 8900000] (imputed)	N
652	chr10	8841668	8841669	rs2025758	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs2025758-T	0.58	5E-15		1.041	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
652	chr10	8848250	8848251	rs446522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs446522-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
652	chr10	8850734	8850735	rs11255938	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	10p14	NR	rs11255938-?	0.54	2E-6		1.098901	[1.06-1.15]	Illumina [~ 1072558] (imputed)	N
652	chr10	8850734	8850735	rs11255938	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p14	NR	rs11255938-C	0.5454	4E-18		1.0535188	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
652	chr10	8850734	8850735	rs11255938	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs11255938-?	NR	3E-12	(conditional)			Affymetrix [15688218] (imputed)	N
652	chr10	8850734	8850735	rs11255938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p14		rs11255938-?	NR	8E-18				NR [~ 8900000] (imputed)	N
652	chr10	8855243	8855244	rs1577218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs1577218-G	0.58195	8E-10		0.01416461	[0.0096-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr10	8871928	8871929	rs11318179	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10p14	NR	rs11318179-?	NR	2E-6		2.08	[1.88-2.3]	Illumina [539000] (imputed)	N
652	chr10	8892384	8892385	rs77987301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs77987301-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
652	chr10	8901377	8901378	rs956177	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p14	FLJ45983	rs956177-?	NR	1E-6	(aspartate)	0.59474504	[0.35-0.84] unit increase	Affymetrix [at least 2500000] (imputed)	N
653	chr10	8932979	8932980	rs290897	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	10p14	Intergenic	rs290897-T	NR	1E-6		0.049258	[0.029-0.069] unit decrease	Illumina [13519193] (imputed)	N
653	chr10	8935997	8935998	rs73635312	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	10p14	GATA3	rs73635312-G	0.84	3E-23		1.19	[NR]	Illumina [at least 560000] (imputed)	N
653	chr10	8935997	8935998	rs73635312	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	10p14	GATA3, RP11-428L9.1, RP11-428L9.2	rs73635312-G	0.874	2E-16		1.35	[1.25-1.45]	Illumina [24988228] (imputed)	N
653	chr10	8936161	8936162	rs11255968	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs11255968-C	0.96	8E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
653	chr10	8936907	8936908	rs290904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14	RP11-428L9.1	rs290904-C	0.9646577	2E-10		0.038604096	[0.027-0.05] unit increase	Affymetrix [93095623] (imputed)	N
653	chr10	8939670	8939671	rs145102655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	10p14		rs145102655-T	NR	2E-34		0.1909	[0.16-0.22] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
653	chr10	8940393	8940394	rs12253380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	10p14		rs12253380-G	0.561739	4E-13		0.0329333	[0.024-0.042] unit decrease	Illumina [13470073] (imputed)	N
653	chr10	8940393	8940394	rs12253380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	10p14		rs12253380-G	0.561885031	3E-22		0.13443829	[0.11-0.16] unit decrease	Illumina [13429513] (imputed)	N
653	chr10	8940393	8940394	rs12253380	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	10p14		rs12253380-G	NR	3E-16		0.8736538	[0.845850941346268-0.902370609461935]	Illumina [8919992] (imputed)	N
653	chr10	8940393	8940394	rs12253380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs12253380-?	NR	2E-20				NR [~ 8900000] (imputed)	N
653	chr10	8940953	8940954	rs76141549	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		10p14	LOC105755953	rs76141549-A	NR	2E-13		1.26	[1.19-1.34]	Affymetrix [5734850] (imputed)	N
653	chr10	8944051	8944052	rs76407406	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	10p14		rs76407406-?	NR	5E-36		0.796728	[0.76-0.83]	NR [685523]	N
653	chr10	8944051	8944052	rs76407406	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	10p14		rs76407406-?	NR	3E-12		0.927247	[0.91-0.95]	NR [688737]	N
653	chr10	8954223	8954224	rs2388896	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	10p14	intergenic	rs2388896-G	0.599	9E-8		1.28	[1.15-1.43]	Illumina [516131]	N
653	chr10	8958586	8958587	rs11255975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14	RP11-428L9.1	rs11255975-C	0.057958	9E-10		0.029490786	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr10	8962476	8962477	rs138501911	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	10p14	RP11-428L9.1	rs138501911-C	0.882779	1E-43		1.2048193	[1.18-1.25]	Affymetrix [7600000] (imputed)	N
653	chr10	8962476	8962477	rs138501911	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	10p14	RP11-428L9.1	rs138501911-C	0.887727	1E-54		1.25	[1.2-1.28]	Affymetrix, Illumina [up to 9061544] (imputed)	N
653	chr10	8972017	8972018	rs10508372	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	10p14	LOC338591	rs10508372-C	0.433	2E-15		1.16	[1.12-1.21]	Illumina [458847]	N
653	chr10	8995291	8995292	rs74623270	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	10p14	LOC105755953	rs74623270-A	0.115686	2E-42		0.25385892	[0.22-0.29] unit decrease	Affymetrix [7260263] (imputed)	N
653	chr10	8998517	8998518	rs827625	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	10p14	LOC338591, LOC389936	rs827625-?	NR	3E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
653	chr10	8998728	8998729	rs75861713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs75861713-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
653	chr10	8998728	8998729	rs75861713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs75861713-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9001326	9001327	rs827624	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs827624-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9002168	9002169	rs827620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs827620-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9002168	9002169	rs827620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs827620-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9010623	9010624	rs827637	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	Intergenic	rs827637-G	0.551306	2E-10		1.0405201	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
653	chr10	9023709	9023710	rs1663692	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p14	FLJ45983	rs1663692-?	NR	9E-6	(CE 18:3)	0.22057234	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
653	chr10	9023814	9023815	rs35766269	25935106	Kim KW	2015-04-30	J Allergy Clin Immunol	Genome-wide association study of recalcitrant atopic dermatitis in Korean children.	Recalcitrant atopic dermatitis	246 Korean ancestry child cases, 551 Korean ancestry adult controls	NA	10p14	GATA3	rs35766269-A	0.580	1E-7		1.946	[1.529-2.494]	Affymetrix [2501352] (imputed)	N
653	chr10	9028945	9028946	rs72782675	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p14	NR	rs72782675-C	0.98955	2E-9		1.198897	[1.13-1.27]	Affymetrix [15688218] (imputed)	N
653	chr10	9028945	9028946	rs72782675	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs72782675-?	NR	3E-11	(conditional)			Affymetrix [15688218] (imputed)	N
653	chr10	9032315	9032316	rs11256008	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10p14	intergenic	rs11256008-C	0.1504	1E-14		0.03892741	[0.029-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9032315	9032316	rs11256008	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10p14	intergenic	rs11256008-C	0.1503	1E-15		0.04042193	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9032554	9032555	rs72782676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs72782676-G	0.00698100000000002	4E-24		0.14218724	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr10	9032554	9032555	rs72782676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs72782676-G	0.00698200000000004	1E-31		0.16246684	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr10	9032554	9032555	rs72782676	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LOC101928272, LINC00709, LINC00708, GATA3, GATA3-AS1, TAF3	rs72782676-C	0.99289	7E-27		1.5860428	[1.45-1.72]	Affymetrix [32463443] (imputed)	N
653	chr10	9032554	9032555	rs72782676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs72782676-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9032554	9032555	rs72782676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs72782676-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9032554	9032555	rs72782676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs72782676-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9032554	9032555	rs72782676	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	LINC00709	rs72782676-C	0.992876	7E-21		1.4291159	[1.35-1.5]	Affymetrix [8274727] (imputed)	N
653	chr10	9032554	9032555	rs72782676	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs72782676-C	0.98	3E-11		1.303	[1.23-1.38]	Affymetrix, Illumina [8307659] (imputed)	N
653	chr10	9036981	9036982	rs1912580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p14	intergenic	rs1912580-C	0.1536	3E-14		0.03775522	[0.028-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9036981	9036982	rs1912580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10p14	intergenic	rs1912580-C	0.1536	4E-17		0.04177164	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9036981	9036982	rs1912580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p14	intergenic	rs1912580-C	0.1537	5E-15		0.0388432	[0.029-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9037491	9037492	rs930579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs930579-T	0.151517	4E-11		0.020980684	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
653	chr10	9037491	9037492	rs930579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs930579-T	0.151528	5E-11		0.020798951	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
653	chr10	9037491	9037492	rs930579	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs930579-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9038356	9038357	rs12356492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs12356492-?	NR	5E-19				Affymetrix [~ 8270000] (imputed)	N
653	chr10	9040699	9040700	rs4116669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs4116669-T	0.816675	1E-10		0.020641714	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr10	9040699	9040700	rs4116669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs4116669-T	0.816685	8E-14		0.023584584	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr10	9042744	9042745	rs34574566	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	10p14	NR	rs34574566-?	NR	3E-8		0.36	NR unit decrease	Affymetrix [9246221] (imputed)	N
653	chr10	9043351	9043352	rs11256016	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p14		rs11256016-G	0.949	3E-17				Affymetrix [10369434] (imputed)	N
653	chr10	9043403	9043404	rs61840192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	10p14		rs61840192-A	NR	3E-18		0.1837	[0.14-0.23] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
653	chr10	9043403	9043404	rs61840192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p14		rs61840192-A	NR	3E-52		0.0259	[0.023-0.029] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
653	chr10	9043403	9043404	rs61840192	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p14		rs61840192-G	0.57	1E-38				Affymetrix [10369434] (imputed)	N
653	chr10	9043403	9043404	rs61840192	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	10p14	LOC101928272	rs61840192-G	0.573	8E-25		1.1764705	[1.14-1.2]	Affymetrix [33771858] (imputed)	N
653	chr10	9043403	9043404	rs61840192	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	10p14	NR	rs61840192-?	NR	6E-7		0.0949	[0.058-0.132] unit increase	Illumina [at least 560000] (imputed)	N
653	chr10	9043403	9043404	rs61840192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p14	intergenic	rs61840192-A	0.4301	4E-27		0.03921962	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9043403	9043404	rs61840192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10p14	intergenic	rs61840192-A	0.4301	8E-27		0.0391122	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9043403	9043404	rs61840192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10p14	intergenic	rs61840192-A	0.43	7E-31		0.04194635	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9043403	9043404	rs61840192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10p14	intergenic	rs61840192-A	0.4301	2E-27		0.03955539	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9043403	9043404	rs61840192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p14	intergenic	rs61840192-A	0.4301	2E-28		0.04023314	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr10	9043456	9043457	rs186856025	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p14	NR	rs186856025-C	0.8923	5E-17		1.0847163	[1.07-1.1]	Affymetrix [15688218] (imputed)	N
653	chr10	9043918	9043919	rs11256017	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	10p14	CELF2, GATA3	rs11256017-T	0.1823	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
654	chr10	9046644	9046645	rs2589561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs2589561-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9046644	9046645	rs2589561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs2589561-?	NR	9E-27				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9046644	9046645	rs2589561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs2589561-?	NR	4E-25				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9046644	9046645	rs2589561	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	10p14	GATA3, CELF2	rs2589561-A	0.18000000000000005	4E-9		1.098901	[1.06-1.14]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
654	chr10	9049252	9049253	rs12413578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	10p14		rs12413578-T	NR	5E-21		0.1708	[0.14-0.21] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
654	chr10	9049252	9049253	rs12413578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs12413578-T	0.104963	1E-16		0.032620747	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr10	9049252	9049253	rs12413578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs12413578-T	0.104955	3E-17		0.033359412	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LOC101928272, LINC00709, LINC00708, GATA3, GATA3-AS1, TAF3	rs12413578-C	0.89539	9E-47		1.1652431	[1.14-1.19]	Affymetrix [32463443] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs12413578-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs12413578-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs12413578-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs12413578-?	NR	5E-26				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	NR	rs12413578-?	NR	1E-15	(conditional)			Affymetrix [15688218] (imputed)	N
654	chr10	9049252	9049253	rs12413578	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10p14	GATA3, SFTA1P	rs12413578-?	NR	9E-41		1.178	[1.15-1.2]	Affymetrix [9000000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs12413578-C	NR	8E-41		1.158	[1.14-1.18]	Affymetrix [9000000] (imputed)	N
654	chr10	9049252	9049253	rs12413578	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p14	10p14	rs12413578-T	0.1	3E-7	(EA)	0.18538	[0.11-0.26] unit decrease	Illumina [8380626] (imputed)	N
654	chr10	9049252	9049253	rs12413578	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	10p14	HV745896	rs12413578-?	NR	5E-10		1.1111112	[1.08-1.15]	Affymetrix [74888535] (imputed)	N
654	chr10	9049252	9049253	rs12413578	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs12413578-C	0.9	1E-27		1.095	[1.08-1.11]	Affymetrix, Illumina [8307659] (imputed)	N
654	chr10	9049252	9049253	rs12413578	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	10p14	GATA3	rs12413578-?	NR	8E-12		1.1223345	[1.09-1.16]	Illumina [13747813] (imputed)	N
654	chr10	9049252	9049253	rs12413578	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	intergenic	rs12413578-C	0.9	8E-8	(EA)	1.2	[1.12-1.29]	Affymetrix, Illumina [up to 9739303] (imputed)	N
654	chr10	9049252	9049253	rs12413578	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p14	intergenic	rs12413578-C	0.9	5E-8		1.2	[1.13-1.29]	Affymetrix, Illumina [up to 9739303] (imputed)	N
654	chr10	9051337	9051338	rs11256024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	10p14		rs11256024-T	NR	5E-8		0.127	[0.082-0.172] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
654	chr10	9052741	9052742	rs1775550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	10p14		rs1775550-A	NR	8E-41		0.1142	[0.098-0.131] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
654	chr10	9052741	9052742	rs1775550	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	10p14	GATA3	rs1775550-?	NR	6E-11		1.067	[1.047-1.088]	Illumina [12845910] (imputed)	N
654	chr10	9053072	9053073	rs962992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs962992-?	NR	2E-34				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9053131	9053132	rs962993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs962993-T	0.38536	7E-86				Affymetrix, Illumina [19872809] (imputed)	N
654	chr10	9053131	9053132	rs962993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p14	NR	rs962993-T	0.422478	5E-90		0.040434	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
654	chr10	9053131	9053132	rs962993	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	10p14	GATA3	rs962993-C	0.5797	6E-11		1.0770059	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
654	chr10	9053131	9053132	rs962993	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p14	GATA3	rs962993-T	0.4292	2E-8		0.0707	[0.046-0.095] unit decrease	Illumina [2400000] (imputed)	N
654	chr10	9053172	9053173	rs2797288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	10p14	NR	rs2797288-G	0.185877	6E-15		0.048082	[0.036-0.06] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
654	chr10	9054324	9054325	rs1775553	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	10p14	NR	rs1775553-C	0.5768	1E-31		1.0666666	[1.06-1.08]	Affymetrix [15688218] (imputed)	N
654	chr10	9054324	9054325	rs1775553	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	10p14	RP11-428L9.2	rs1775553-T	0.423019	2E-25		0.11792719	[0.096-0.14] unit decrease	Affymetrix [7288503] (imputed)	N
654	chr10	9054324	9054325	rs1775553	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	10p14	RP11-428L9.2	rs1775553-T	0.421285	5E-33		0.1092133	[0.091-0.127] unit decrease	Affymetrix [7288503] (imputed)	N
654	chr10	9054339	9054340	rs1775554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p14		rs1775554-C	0.423128	3E-13		0.019455507	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr10	9054339	9054340	rs1775554	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	10p14	GATA3, CELF2	rs1775554-A	0.577	3E-13		1.117	[1.084-1.150]	Affymetrix [10894596] (imputed)	N
654	chr10	9054339	9054340	rs1775554	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	10p14	GATA3, CELF2	rs1775554-A	0.577	5E-29		1.121	[1.098-1.143]	Affymetrix [10894596] (imputed)	N
654	chr10	9054339	9054340	rs1775554	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	10p14	GATA3, SFTA1P	rs1775554-?	NR	3E-47		1.102	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
654	chr10	9054339	9054340	rs1775554	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs1775554-A	NR	2E-46		1.103	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
654	chr10	9054786	9054787	rs1663687	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	10p14	GATA3, CELF2	rs1663687-A	0.39	2E-10		0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
654	chr10	9057421	9057422	rs1031163	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs1031163-?	NR	9E-30				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9058670	9058671	rs1444782	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	10p14	GATA3, CELF2	rs1444782-A	0.423576594796558	2E-47		0.095444955	[0.083-0.108] unit decrease	Affymetrix [35186738] (imputed)	N
654	chr10	9058670	9058671	rs1444782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p14		rs1444782-A	0.423249	1E-14		0.020451205	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr10	9058670	9058671	rs1444782	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LOC101928272, LINC00709, LINC00708, GATA3, GATA3-AS1	rs1444782-G	0.57643	9E-48		1.0975382	[1.09-1.11]	Affymetrix [32463443] (imputed)	N
654	chr10	9058670	9058671	rs1444782	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs1444782-?	NR	4E-27				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9058670	9058671	rs1444782	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs1444782-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9058670	9058671	rs1444782	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	Intergenic	rs1444782-G	0.576198	1E-48		1.0961826	[1.08-1.11]	Affymetrix [8274727] (imputed)	N
654	chr10	9058670	9058671	rs1444782	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	10p14	intergenic	rs1444782-G	0.597	1E-14		1.1904762	[1.14-1.25]	Affymetrix, Illumina [up to 37123566] (imputed)	N
654	chr10	9058670	9058671	rs1444782	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	10p14	intergenic	rs1444782-G	0.597	4E-7		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 37123566] (imputed)	N
654	chr10	9058670	9058671	rs1444782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p14		rs1444782-?	NR	2E-10				NR [~ 8900000] (imputed)	N
654	chr10	9058670	9058671	rs1444782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs1444782-?	NR	2E-98				NR [~ 8900000] (imputed)	N
654	chr10	9058670	9058671	rs1444782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10p14		rs1444782-?	NR	2E-22				NR [~ 8900000] (imputed)	N
654	chr10	9062855	9062856	rs2197415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	10p14		rs2197415-G	NR	8E-29		0.1046	[0.086-0.123] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
654	chr10	9062855	9062856	rs2197415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	10p14		rs2197415-G	NR	1E-34		0.1048	[0.088-0.121] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
654	chr10	9062855	9062856	rs2197415	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10p14	GATA3	rs2197415-G	0.58	2E-64				NR [> 9500000] (imputed)	N
654	chr10	9062855	9062856	rs2197415	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	10p14	GATA3	rs2197415-G	0.582284	6E-60		1.1044852	[1.09139074428887-1.11773678101633]	NR [9572556] (imputed)	N
654	chr10	9062855	9062856	rs2197415	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	10p14	GATA3	rs2197415-T	0.4223	4E-43				Affymetrix [15688218] (imputed)	N
654	chr10	9062855	9062856	rs2197415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10p14		rs2197415-?	NR	1E-45				NR [~ 8900000] (imputed)	N
654	chr10	9063002	9063002	rs3032952	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	10p14		rs3032952-TAC	0.605912655	1E-18		0.855263	[0.826031141-0.885529279]	Illumina [8919992] (imputed)	N
654	chr10	9063775	9063776	rs725861	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	10p14	NR	rs725861-A	NR	7E-10		0.01074	[0.0073-0.0141] unit decrease	NR [11010159] (imputed)	N
654	chr10	9063775	9063776	rs725861	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	10p14	NR	rs725861-A	NR	1E-11		0.00908198	[0.0065-0.0117] unit decrease	NR [11010159] (imputed)	N
654	chr10	9063775	9063776	rs725861	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	10p14	NR	rs725861-A	NR	1E-12	(adjusted for BMI)	0.00938	[0.0068-0.012] unit decrease	NR [11010159] (imputed)	N
654	chr10	9064360	9064361	rs1444789	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	10p14		rs1444789-C	0.23	2E-6		1.27	[1.15-1.4]	Affymetrix [4922160] (imputed)	N
654	chr10	9064360	9064361	rs1444789	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	10p14		rs1444789-?	NR	3E-8		1.07	[1.05-1.1]	Illumina [5170515] (imputed)	N
654	chr10	9064360	9064361	rs1444789	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10p14	NR	rs1444789-C	0.1849	7E-22		1.076	[1.06-1.091]	Affymetrix [15688218] (imputed)	N
654	chr10	9064360	9064361	rs1444789	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs1444789-C	0.2	2E-22		1.066	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
654	chr10	9064601	9064602	rs17432979	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	10p14	SFTA1P, GATA3	rs17432979-?	0.0	3E-8				Affymetrix [547296]	N
654	chr10	9064715	9064716	rs1612986	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	10p14	LOC101928272, LINC00709, LINC00708, GATA3, GATA3-AS1	rs1612986-C	0.18648	6E-32		1.0986	[1.08-1.12]	Affymetrix [32463443] (imputed)	N
654	chr10	9064715	9064716	rs1612986	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs1612986-?	NR	2E-24				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9064715	9064716	rs1612986	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10p14	GATA3, SFTA1P	rs1612986-?	NR	8E-41		1.131	[1.11-1.15]	Affymetrix [9000000] (imputed)	N
654	chr10	9064715	9064716	rs1612986	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs1612986-C	NR	2E-40		1.124	[1.11-1.14]	Affymetrix [9000000] (imputed)	N
654	chr10	9065093	9065094	rs1342774	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10p14	Intergenic	rs1342774-G	NR	8E-6		0.0280261	[0.016-0.04] unit decrease	Illumina [13520550] (imputed)	N
654	chr10	9070676	9070677	rs77000868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p14		rs77000868-T	0.967	3E-11				Affymetrix [10369434] (imputed)	N
654	chr10	9070676	9070677	rs77000868	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	LINC00709	rs77000868-T	0.966595	1E-14		1.1387031	[1.1-1.17]	Affymetrix [8274727] (imputed)	N
654	chr10	9076155	9076156	rs117418264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs117418264-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9086146	9086147	rs11256034	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10p14	NR	rs11256034-?	NR	3E-8	(right entorhinal)			NR [9227495] (imputed)	N
654	chr10	9086146	9086147	rs11256034	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	10p14	NR	rs11256034-T	0.2478	5E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
654	chr10	9088113	9088114	rs67958007	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10p14		rs67958007-T	NR	5E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
654	chr10	9088113	9088114	rs67958007	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p14	intergenic	rs67958007-T	0.12	2E-10	(EA)	1.09	[1.06-1.12] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
654	chr10	9108517	9108518	rs17145188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	10p14	NR	rs17145188-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9108517	9108518	rs17145188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs17145188-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9108517	9108518	rs17145188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs17145188-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9111825	9111826	rs72784452	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	Intergenic	rs72784452-C	0.924197	2E-23		1.124278	[1.1-1.15]	Affymetrix [8274727] (imputed)	N
654	chr10	9120893	9120894	rs17363282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs17363282-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
654	chr10	9128991	9128992	rs72784465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs72784465-A	NR	8E-11		0.0652	[0.046-0.085] unit increase	Affymetrix [9000000] (imputed)	N
654	chr10	9137373	9137374	rs12412624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs12412624-C	NR	8E-10		0.0471	[0.032-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr10	9150198	9150199	rs118091978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs118091978-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
655	chr10	9190948	9190949	rs1149926	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	10p14	NR	rs1149926-C		7E-6		0.3378	[0.19-0.48] SD units increase	NR [10700000] (imputed)	N
655	chr10	9192126	9192126	rs781349567	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	10p14		rs781349567-?	NR	6E-14				NR [9705931] (imputed)	N
655	chr10	9193900	9193901	rs1149933	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p14	NR	rs1149933-A	0.4439	2E-8				NR [9056863] (imputed)	N
655	chr10	9193900	9193901	rs1149933	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	10p14	intergenic	rs1149933-?	NR	3E-6	(AUC)			NR [2092490]	N
655	chr10	9193997	9193998	rs1149934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p14		rs1149934-A	0.47	3E-19		8.95	z score increase	Affymetrix [9061022] (imputed)	N
655	chr10	9203791	9203792	rs1149939	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p14	NR	rs1149939-A	0.48	2E-12				NR [9056863] (imputed)	N
655	chr10	9204164	9204165	rs1242990	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p14	NR	rs1242990-?		5E-10				NR [7428630] (imputed)	N
655	chr10	9204974	9204975	rs10905524	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (short-term)	8,195 European ancestry individuals	NA	10p14	GATA3	rs10905524-A	0.922	3E-6		0.152	[0.087-0.217] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
655	chr10	9205269	9205270	rs983233	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p14		rs983233-G	0.47	2E-9		6.02	z score increase	Affymetrix [9061022] (imputed)	N
655	chr10	9205269	9205270	rs983233	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10p14	ROBO2	rs983233-?		2E-10				NR [7428630] (imputed)	N
655	chr10	9205447	9205448	rs1149940	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p14		rs1149940-A	0.47	5E-8		5.45	z score increase	Affymetrix [9061022] (imputed)	N
655	chr10	9208203	9208204	rs17406680	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs17406680-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
655	chr10	9208203	9208204	rs17406680	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	10p14	NR	rs17406680-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
655	chr10	9208203	9208204	rs17406680	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	LINC00709	rs17406680-C	0.052346	6E-20		1.1326919	[1.11-1.16]	Affymetrix [8274727] (imputed)	N
655	chr10	9217158	9217159	rs68140948	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p14	NR	rs68140948-T	0.1201	3E-6	(EA)	0.0481	[0.028-0.068] unit increase	Illumina [~ 11800000] (imputed)	N
655	chr10	9221956	9221957	rs4749837	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	10p14		rs4749837-?	NR	4E-9		0.936467	[0.91-0.96]	NR [685523]	N
655	chr10	9255889	9255890	rs75125788	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10p14	LINC00709	rs75125788-C	0.919355	5E-8		1.0639997	[1.04-1.09]	Affymetrix [8274727] (imputed)	N
655	chr10	9266867	9266868	rs1020096	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	10p14	GATA3	rs1020096-A	0.36	8E-7		3.39	[2.05-5.62]	Affymetrix [426344]	N
655	chr10	9274339	9274340	rs80114991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs80114991-T	NR	2E-20		0.0753	[0.059-0.091] unit increase	Affymetrix [9000000] (imputed)	N
655	chr10	9277524	9277525	rs768606	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	10p14	LOC100507163	rs768606-A	0.07	1E-7		0.48	[0.3-0.66] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
655	chr10	9277524	9277525	rs768606	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	10p14	GATA3	rs768606-A	0.07	1E-7	(cohort study)	1.62	[1.35-1.94]	Affymetrix, Illumina [up to 2600000] (imputed)	N
655	chr10	9280393	9280394	rs17486892	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	10p14	LOC101928272	rs17486892-C	0.212039	5E-9		0.0768868	[0.051-0.103] unit increase	Affymetrix [7260263] (imputed)	N
655	chr10	9293289	9293290	rs1143869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10p14	NR	rs1143869-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
655	chr10	9296649	9296650	rs12780111	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	10p14	LOC101928272	rs12780111-?	NR	8E-12		0.03782	[0.027-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
656	chr10	9310920	9310921	rs34350610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs34350610-?	NR	2E-9				NR [~ 8900000] (imputed)	N
656	chr10	9311511	9311512	rs7067953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs7067953-T	NR	2E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
656	chr10	9328650	9328651	rs10491003	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10p14	NR	rs10491003-T	NR	5E-9		0.027	[0.017-0.037] mg/dl increase	Affymetrix [NR] (imputed)	N
656	chr10	9328650	9328651	rs10491003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	10p14	NR	rs10491003-T	NR	3E-21		0.0406	[0.032-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
656	chr10	9328650	9328651	rs10491003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs10491003-T	NR	6E-58		0.0688	[0.06-0.077] unit increase	Affymetrix [9000000] (imputed)	N
656	chr10	9328650	9328651	rs10491003	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	10p14	GATA3	rs10491003-T	0.09	5E-9		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
656	chr10	9329035	9329036	rs35009121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	10p14		rs35009121-A	0.371008	8E-12		0.0336964	[0.024-0.043] unit decrease	Illumina [13468899] (imputed)	N
656	chr10	9329035	9329036	rs35009121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10p14		rs35009121-A	NR	2E-104		0.0514	[0.047-0.056] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
656	chr10	9330173	9330174	rs1149965	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs1149965-G	NR	2E-12		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
656	chr10	9363876	9363877	rs12247397	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	10p14	LOC389936	rs12247397-G		3E-9	(AA)			Illumina [NR]	N
656	chr10	9401269	9401270	rs76544535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10p14	NR	rs76544535-G	NR	6E-17		0.0522	[0.04-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
656	chr10	9427335	9427336	rs117612853	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10p14		rs117612853-C	NR	6E-6	(GLM)	3.4459	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
657	chr10	9512025	9512026	rs76703216	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	10p14	LOC101928272	rs76703216-?	NR	4E-6				Affymetrix [5045527] (imputed)	N
657	chr10	9526945	9526946	rs74949229	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	10p14	NR	rs74949229-?		4E-6		7.142	[6.25-8.03] unit increase	Illumina [~ 4900000] (imputed)	N
658	chr10	9568909	9568910	rs17515642	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p14	NR	rs17515642-C	0.855118419830281	2E-6	(IGP21)	0.2258	[0.13-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
658	chr10	9633541	9633542	rs75673924	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		LOC105376402	rs75673924-C	0.057999999999999996	4E-6		0.17	[0.092-0.248] unit decrease	Illumina [3700000] (imputed)	N
658	chr10	9637946	9637947	rs12249391	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p14	NR	rs12249391-T	0.099	9E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
658	chr10	9640543	9640544	rs7913440	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		10p14	NR	rs7913440-C	NR	5E-6		0.24137	[0.14-0.35] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
658	chr10	9644799	9644800	rs4749884	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	10p14	intergenic	rs4749884-C	0.533	7E-6		1.12	[NR]	Illumina [4550396] (imputed)	N
658	chr10	9657846	9657847	rs1158960	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	10p14	NR	rs1158960-A	0.248735	2E-8		5.61	z score increase	NR [~ 10847151] (imputed)	N
659	chr10	9795915	9795916	rs10905619	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	10p14	NR	rs10905619-A	0.254937	3E-8		5.54	z score increase	NR [~ 10847151] (imputed)	N
660	chr10	9928511	9928512	rs4749900	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	10p14	LINC02663	rs4749900-T	NR	4E-6		0.4309	[0.25-0.61] unit decrease	Illumina [9377111] (imputed)	N
660	chr10	9951080	9951081	rs10905638	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	10p14	NR	rs10905638-C	0.440857	3E-10		6.28	z score increase	NR [~ 10847151] (imputed)	N
661	chr10	9962205	9962206	rs11256385	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	10p14	NR	rs11256385-A	NR	5E-8		5.467	z score decrease	Affymetrix [10847151] (imputed)	N
661	chr10	9965783	9965784	rs72777347	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p14		rs72777347-A	0.3748	9E-9	(conditional-joint)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
661	chr10	9972045	9972046	rs7894722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p14		rs7894722-T	0.3748	5E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
661	chr10	9972045	9972046	rs7894722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p14	Intergenic	rs7894722-T	0.3748	2E-9	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
661	chr10	9983351	9983351	rs11458658	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10p14	LOC101928298	rs11458658-C	0.615977	3E-9		0.0126286	[0.0084-0.0168] unit decrease	NR [16516521] (imputed)	N
661	chr10	9996989	9996990	rs12263766	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	TCEB1P3	rs12263766-G	0.0040	3E-6	(Urinary free epinephrine )	0.02	[NR] nmol/d increase	Illumina [899892]	N
661	chr10	9998279	9998280	rs4749923	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IL 1RI plasma levels	400 French ancestry individuals	NA	10p14		rs4749923-G	NR	3E-10		0.28	[0.2-0.36] pg/mL decrease	Illumina [5201092] (imputed)	N
661	chr10	10020193	10020194	rs7918807	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	10p14	STFA1P	rs7918807-T	0.52	4E-8		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
661	chr10	10020193	10020194	rs7918807	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	10p14	STFA1P	rs7918807-T	0.52	3E-7		0.028	[0.017-0.039] unit increase	Affymetrix [at least 8900000] (imputed)	N
661	chr10	10022100	10022101	rs12253502	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	10p14	TCEB1P3	rs12253502-G	0.0426	6E-6		2.156	[1.546-3.006]	Affymetrix, Illumina [14074516] (imputed)	N
661	chr10	10025999	10026000	rs6602384	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10p14	NR	rs6602384-G	0.451	1E-7		0.00777447	[0.0049-0.0106] unit increase	NR [9732723] (imputed)	N
661	chr10	10035015	10035016	rs6602388	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p14		rs6602388-G	0.517	6E-13		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
661	chr10	10037365	10037366	rs75211749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p14		rs75211749-?	NR	4E-13				NR [~ 8900000] (imputed)	N
661	chr10	10042640	10042641	rs10905649	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10p14	NA	rs10905649-T		2E-9		0.0109808	[0.0074-0.0146] unit decrease	Illumina [13288253] (imputed)	N
661	chr10	10043158	10043159	rs7920501	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p14	NR	rs7920501-A	0.465	1E-11		0.00734491	[0.0052-0.0095] unit decrease	NR [9732723] (imputed)	N
661	chr10	10043158	10043159	rs7920501	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p14	NR	rs7920501-A	0.465	1E-9		0.015516845	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
661	chr10	10061718	10061719	rs17147036	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10p14	CELF2	rs17147036-T	0.579	2E-10		0.0076	[0.0052-0.01] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
661	chr10	10073543	10073544	rs10905651	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	10p14	LOC644495	rs10905651-?	NR	8E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
661	chr10	10076428	10076429	rs2398113	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10p14		rs2398113-?	NR	1E-8		0.0117606	[0.0077-0.0158] unit decrease	NR [6912294] (imputed)	N
661	chr10	10081299	10081300	rs7076367	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10p14	CELF2	rs7076367-T	0.6035	7E-10		0.012252786	[0.0084-0.0161] unit increase	Illumina [9339358] (imputed)	N
661	chr10	10084565	10084566	rs17147135	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	TCEB1P3	rs17147135-G	0.067	8E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
662	chr10	10110442	10110443	rs17147186	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs17147186-T	0.01568	1E-9	(OAT)	0.05491	NR unit increase	Illumina [1671387] (imputed)	N
662	chr10	10116873	10116874	rs147596965	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	10p14	Intergenic	rs147596965-T	0.07	6E-8		0.67	[0.43-0.91] unit increase	NR [~ 38000000] (imputed)	N
662	chr10	10169829	10169830	rs2762662	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p14	NR	rs2762662-?	NR	1E-9				Affymetrix [NR]	N
662	chr10	10218421	10218422	rs78705233	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	10p14		rs78705233-A	NR	2E-6		0.4138	[0.24-0.58] increase	Illumina [6334277] (imputed)	N
663	chr10	10240500	10240501	rs1535557	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	10p14		rs1535557-G	NR	2E-6		0.090799935	[0.053-0.128] increase	Illumina [6334277] (imputed)	N
663	chr10	10250503	10250504	rs12240935	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	10p14	YRNA	rs12240935-?	NR	1E-7	(boys)	3.09	[NR] unit decrease	Illumina [774433] (imputed)	N
663	chr10	10257276	10257277	rs7913496	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10p14	CELF2	rs7913496-C	0.179662	2E-8		0.0100297	[0.0065-0.0135] unit increase	Affymetrix [12370749]	N
663	chr10	10258486	10258487	rs10905682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p14		rs10905682-?	NR	2E-8				NR [~ 8900000] (imputed)	N
663	chr10	10264199	10264200	rs6602411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p14		rs6602411-C	NR	3E-8		0.0168	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
663	chr10	10264199	10264200	rs6602411	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p14	NA	rs6602411-T	0.1755	6E-11		0.0147	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
663	chr10	10275300	10275301	rs147283683	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	10p14	NR	rs147283683-?	NR	8E-10		6.152	NR z score decrease	Illumina [at least 830937] (imputed)	N
663	chr10	10296118	10296119	rs7097577	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	TCEB1P3	rs7097577-C	0.0060	6E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
663	chr10	10340043	10340044	rs7086701	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	10p14		rs7086701-T		1E-6		1.15	[1.09-1.21]	Affymetrix, Illumina [1722107] (imputed)	N
664	chr10	10365480	10365481	rs797016800	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10p14		rs797016800-C	NR	1E-8		0.5	[0.33-0.67] unit decrease	Affymetrix [509886] (imputed)	N
664	chr10	10378012	10378013	rs7922453	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	10p14	BC032914, SFTA1P	rs7922453-T	0.01	1E-7	(African American)	1.76	[1.11-2.41] unit increase	Illumina [up to 13042663] (imputed)	N
664	chr10	10388194	10388195	rs7092703	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		10p14	NR	rs7092703-C		3E-6		0.054	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
664	chr10	10392587	10392588	rs12572298	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10p14	TCEB1P3	rs12572298-A	NR	8E-6	(sleep onset irregularity)	0.07093	[0.04-0.102] unit decrease	Affymetrix [7141204] (imputed)	N
664	chr10	10393670	10393671	rs145974327	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10p14		rs145974327-A	NR	5E-9		0.392	[0.26-0.52] unit decrease	Affymetrix [509886] (imputed)	N
664	chr10	10402462	10402463	rs2246088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs2246088-A	0.0122	3E-9	(PRTN3)	0.0719	NR unit increase	Illumina [1671387] (imputed)	N
664	chr10	10444073	10444074	rs2842147	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs2842147-A	0.0122	1E-8	(HAL)	0.2114	NR unit increase	Illumina [1671387] (imputed)	N
665	chr10	10486210	10486211	rs2243951	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	10p14	NR	rs2243951-?	NR	3E-6		0.7938	[0.49-1.1] unit decrease	Affymetrix [7154205] (imputed)	N
665	chr10	10535953	10535954	rs11256627	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10p14	CELF2	rs11256627-G	0.295322	1E-8		0.00887696	[0.0058-0.0119] unit decrease	Affymetrix [12370749]	N
665	chr10	10542850	10542851	rs4747862	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	10p14		rs4747862-C	0.06349	9E-6		2.243	[1.57-3.203]	Affymetrix [7975321] (imputed)	N
665	chr10	10564422	10564423	rs12571685	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	10p14	GATA3, SFTA1P	rs12571685-G	0.08	6E-6	(EA)	2.33	[1.60-3.39]	Illumina [up to 547389]	N
665	chr10	10601859	10601860	rs11256676	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	10p14	SFTA1P	rs11256676-?	NR	5E-6	(DMFS5mand)			Illumina [518997]	N
666	chr10	10689601	10689602	rs7092313	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	10p14	NR	rs7092313-?		2E-6				Illumina [1211988] (imputed)	N
666	chr10	10689884	10689885	rs10905770	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	10p14	intergenic	rs10905770-?	NR	3E-8		0.0135311	[0.0087-0.0183] unit decrease	Affymetrix [25921788] (imputed)	N
666	chr10	10692301	10692302	rs769354275	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Chronic kidney disease	2,044 European ancestry cases, 65,575 European ancestry controls	NA	10p14	CELF2	rs769354275-G	1.931706E-4	3E-8		12.229734	[7.9-16.56] unit increase	Illumina [24961484] (imputed)	N
666	chr10	10725462	10725463	rs11256768	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	10p14		rs11256768-?	NR	8E-6	(MLM)	0.23322	[0.13-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
667	chr10	10771563	10771564	rs12767525	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	10p14	RP1-186E20.1	rs12767525-T	0.305257	5E-9		1.05	[1.04-1.07]	Affymetrix [7600000] (imputed)	N
667	chr10	10773706	10773707	rs35202367	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	10p14	CELF2	rs35202367-A	0.266983	1E-8		0.06925159	[0.045-0.093] unit increase	Affymetrix [7260263] (imputed)	N
667	chr10	10774823	10774824	rs12764483	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	10p14		rs12764483-?	NR	2E-9		1.0744	[1.05-1.1]	NR [685523]	N
667	chr10	10814158	10814159	rs11256825	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA		NR	rs11256825-A	0.2025	8E-10				NR [9056863] (imputed)	N
667	chr10	10814158	10814159	rs11256825	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11256825-T	0.796179	3E-12		0.0777829	[0.055-0.1] decrease	Affymetrix [11014269] (imputed)	N
667	chr10	10839967	10839968	rs7919525	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p14		rs7919525-G	0.2	1E-13		7.45	z score increase	Affymetrix [9061022] (imputed)	N
667	chr10	10839967	10839968	rs7919525	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p14		rs7919525-G	0.2	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
667	chr10	10840534	10840535	rs11256837	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p14	intergenic	rs11256837-A	0.1956	2E-9		0.2107	[0.14-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
667	chr10	10840534	10840535	rs11256837	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p14	intergenic	rs11256837-A	0.197	1E-12		0.1808	[0.13-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
667	chr10	10840848	10840849	rs6602453	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	10p14	CELF2	rs6602453-A	NR	7E-9		0.0431	unit increase	Illumina [15409056] (imputed)	N
667	chr10	10876942	10876943	rs36006409	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10p14	CELF2	rs36006409-T	0.7958	1E-12		0.1557	[0.11-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
668	chr10	10909400	10909401	rs17148998	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p14		rs17148998-A	0.2042	7E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
668	chr10	10912188	10912189	rs7904832	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p14	Intergenic	rs7904832-T	0.185	2E-9	(MTAG)	0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
668	chr10	10917120	10917121	rs10752212	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	10p14	CELF2	rs10752212-G	0.532	1E-10		0.034	[0.024-0.044] unit increase	Illumina [7428049] (imputed)	N
668	chr10	10922976	10922977	rs2093623	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p14		rs2093623-G	0.506	5E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
668	chr10	10922976	10922977	rs2093623	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10p14	CELF2	rs2093623-G	0.50299	5E-11		0.0139162	[0.0098-0.018] unit decrease	NR [16516521] (imputed)	N
668	chr10	10922976	10922977	rs2093623	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10p14	NR	rs2093623-A	0.488738893317555	5E-12		0.0063373502	[0.0045-0.0081] unit decrease	NR [NR]	N
668	chr10	10922976	10922977	rs2093623	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10p14	NR	rs2093623-A	0.488738893317555	7E-12		0.007764176	[0.0055-0.01] unit decrease	NR [NR]	N
668	chr10	10922976	10922977	rs2093623	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10p14	NR	rs2093623-A	0.488738893317555	5E-12		0.010128265	[0.0073-0.013] unit decrease	NR [NR]	N
668	chr10	10922976	10922977	rs2093623	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	10p14	NR	rs2093623-A	0.488738893317555	1E-11		0.008257311	[0.0059-0.0106] unit decrease	NR [NR]	N
668	chr10	10922976	10922977	rs2093623	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10p14	NR	rs2093623-A	0.488738893317555	5E-12		0.0064589763	[0.0046-0.0083] unit decrease	NR [NR]	N
668	chr10	10922976	10922977	rs2093623	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	10p14	NR	rs2093623-A	NR	1E-8		5.723	z score decrease	Affymetrix [10847151] (imputed)	N
668	chr10	10943378	10943379	rs10795831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10p14		rs10795831-?	NR	2E-9				NR [~ 8900000] (imputed)	N
668	chr10	10943378	10943379	rs10795831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p14		rs10795831-T	0.212	7E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
668	chr10	10943378	10943379	rs10795831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p14	Intergenic	rs10795831-T	0.212	5E-10	(MTAG)	0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
668	chr10	10974255	10974256	rs10905868	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	CUGBP2, CELF2	rs10905868-G	0.151	4E-6	(TSH )	0.02	[NR] uIU/mL increase	Illumina [899892]	N
668	chr10	11000338	11000339	rs62209	21379329	Wijsman EM	2011-02-17	PLoS Genet	Genome-wide association of familial late-onset Alzheimer's disease replicates BIN1 and CLU and nominates CUGBP2 in interaction with APOE.	Alzheimer's disease (late onset)	1,848 European ancestry affected individuals, 1,991 European ancestry unaffected individuals	231 Caribbean Hispanic cases, 187 Caribbean Hispanic controls, 386 European ancestry cases, 386 European ancestry controls	10p14	CUGBP2	rs62209-C	NR	2E-7	(APOE E4 homozygotes)	2.04	[1.56-2.67]	Illumina [565336]	N
669	chr10	11064955	11064956	rs78456066	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	10p14		rs78456066-?	NR	2E-6		1.06266	[1.04-1.09]	NR [688737]	N
669	chr10	11111798	11111799	rs1291861	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine in genetic generalized epilepsy	137 European ancestry responders, 250 European ancestry non-responders	NA	10p14	CELF2	rs1291861-?	NR	6E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
669	chr10	11122634	11122635	rs6602476	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10p14	CELF2	rs6602476-A	0.279508	3E-8		0.01836	[0.012-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
669	chr10	11132049	11132050	rs1291817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p14	Intergenic	rs1291817-A	0.6131	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
669	chr10	11132189	11132190	rs1291818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10p14		rs1291818-?	NR	3E-9				NR [~ 8900000] (imputed)	N
669	chr10	11133822	11133823	rs1291821	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p14	NR	rs1291821-G	0.534	5E-11		0.00710137	[0.005-0.0092] unit increase	NR [9732723] (imputed)	N
669	chr10	11133822	11133823	rs1291821	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p14	NR	rs1291821-G	0.534	1E-8		0.014492989	[0.0095-0.0195] unit increase	NR [~ 10000000] (imputed)	N
670	chr10	11141263	11141264	rs1291823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p14	Intergenic	rs1291823-A	0.488	2E-13	(MTAG)	0.0121	[0.009-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
670	chr10	11141730	11141731	rs1291824	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p14		rs1291824-C	0.463	8E-13		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
670	chr10	11148580	11148581	rs72773940	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	10p14	CELF2	rs72773940-T	0.0287	4E-6		8.131	[NR] unit decrease	Illumina [4827900] (imputed)	N
670	chr10	11151879	11151880	rs4750019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10p14	Intergenic	rs4750019-C	0.5307	1E-8	(MTAG)	0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
670	chr10	11151906	11151907	rs192238733	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	10p14	CELF2	rs192238733-A	0.005	2E-7	(Imidazole derivatives [G01AF])	8.02		Illumina [16500000] (imputed)	N
670	chr10	11161315	11161316	rs1747714	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p14		rs1747714-T	0.5287	4E-14		0.0106	[0.0079-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
670	chr10	11161315	11161316	rs1747714	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p14	Intergenic	rs1747714-T	0.5287	2E-16	(MTAG)	0.0108	[0.0083-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
670	chr10	11197678	11197679	rs7084963	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs7084963-C	0.0122	2E-8	(MACROD1)	0.01511	NR unit decrease	Illumina [1671387] (imputed)	N
670	chr10	11210859	11210860	rs993284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10p14	CELF2	rs993284-G	0.19512	7E-12		0.019434186	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
670	chr10	11224664	11224665	rs596406	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	10p14	CELF2	rs596406-G	0.044	4E-7		0.067	[0.042-0.092] unit increase	Illumina [747076]	N
670	chr10	11224664	11224665	rs596406	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	10p14	CELF2	rs596406-G	0.044	9E-6		0.11	[0.063-0.157] unit increase	Illumina [747076]	N
670	chr10	11246268	11246269	rs1109861	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	10p14	CELF2	rs1109861-A	0.55	2E-6		0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
671	chr10	11283824	11283825	rs11257029	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p14	NR	rs11257029-?	NR	5E-16				Affymetrix [NR]	N
671	chr10	11288417	11288418	rs2765974	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Follicular lymphoma or rheumatoid arthritis	2,686 European ancestry follicular lymphoma cases, 3,921 European ancestry rheumatoid arthritis cases, 11,959 European ancestry controls	NA	10p14	CUGBP2	rs2765974-?	NR	3E-8		1.1424655		Illumina [~ 600000] (imputed)	N
671	chr10	11299734	11299735	rs2277212	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	10p14	CELF2, CELF-AS2	rs2277212-?	NR	9E-6		0.298	[0.17-0.43] unit decrease	Illumina [6590000] (imputed)	N
671	chr10	11355671	11355672	rs7087063	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Activity variability during wake	90,515 individuals	NA	10p14	CELF2	rs7087063-G	NR	3E-8		0.027	[0.017-0.037] unit increase	NR [11024754] (imputed)	N
671	chr10	11394893	11394894	rs3847425	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	10p14		rs3847425-C	NR	7E-7		1.29742	[1.19-1.40] unit increase	Affymetrix [825927] (imputed)	N
672	chr10	11409207	11409207	rs59022999	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	10p14	NR	rs59022999-?	NR	6E-6		0.3262	[0.19-0.47] unit decrease	Illumina [at least 560000] (imputed)	N
672	chr10	11424594	11424595	rs12357875	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p14	NR	rs12357875-?	NR	5E-8				Illumina [7760689] (imputed)	N
672	chr10	11489712	11489713	rs7903896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10p14		rs7903896-A	NR	1E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
673	chr10	11563284	11563285	rs72777665	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10p14	USP6NL	rs72777665-A	NR	5E-7		0.727833	[0.45-1.01] unit increase	Illumina [NR] (imputed)	N
674	chr10	11711011	11711012	rs17539426	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10p14	RP11-138I18.2	rs17539426-A	NR	8E-8		0.867186	[0.55-1.18] unit increase	Illumina [NR] (imputed)	N
674	chr10	11717396	11717397	rs11257238	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	10p14	ECHDC3	rs11257238-C	0.375	1E-8		5.69	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
674	chr10	11717396	11717397	rs11257238	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease in APOE e4- carriers	4,829 European ancestry cases, 9,740 European ancestry controls, 607 African American cases, 2,270 African American controls, 416  Japanese ancestry cases, 743 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	2,751 European ancestry cases, 11,497 European ancestry controls	10p14	NR	rs11257238-T	NR	5E-9		1.14	[1.10-1.18]	NR [NR]	N
674	chr10	11718712	11718713	rs7912495	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10p14		rs7912495-A	0.5336	3E-6		30.753965	z score increase	NR [6814003]	N
674	chr10	11718712	11718713	rs7912495	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	10p14		rs7912495-?	NR	8E-15				Illumina [NR] (imputed)	N
674	chr10	11719009	11719010	rs12265836	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p14	USP6NL	rs12265836-C	0.106	8E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
674	chr10	11720307	11720308	rs7920721	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	10p14	ECHDC3	rs7920721-G	0.39	2E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [11480632] (imputed)	N
674	chr10	11720307	11720308	rs7920721	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	10p14	NR	rs7920721-?	NR	1E-10				Affymetrix [7795605] (imputed)	N
674	chr10	11720307	11720308	rs7920721	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	10p14	USP6NL, ECHDC3	rs7920721-G	0.4	3E-8		1.08	[1.06-1.10]	NR [NR]	N
674	chr10	11720307	11720308	rs7920721	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	10p14	USP6NL, ECHDC3	rs7920721-G	0.38	3E-6		1.12	[1.07-1.17]	NR [NR]	N
674	chr10	11720307	11720308	rs7920721	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	10p14	ECHDC3	rs7920721-G	0.387	3E-7		1.07	[1.04-1.10]	Illumina [7055881] (imputed)	N
674	chr10	11721101	11721102	rs12358692	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	10p14	NR	rs12358692-T	NR	3E-8		1.0869565	[1.04-1.12]	NR [NR]	N
674	chr10	11721118	11721119	rs11257242	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	10p14	ECHDC3	rs11257242-C	NR	2E-8		5.5817	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
674	chr10	11759045	11759046	rs73572923	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10p14		rs73572923-?	NR	8E-6		0.7424202	[0.42-1.07] unit decrease	Illumina [9875426] (imputed)	N
674	chr10	11763399	11763400	rs72779875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs72779875-G	0.08014	1E-12	(ECHDC3)	0.1186	NR unit decrease	Illumina [1671387] (imputed)	N
674	chr10	11767915	11767916	rs10795879	32804141	Wang RZ	2020-08-10	J Alzheimers Dis	Genome-Wide Association Study of Brain Alzheimer's Disease-Related Metabolic Decline as Measured by [18F] FDG-PET Imaging.	Cerebral glucose metabolic decline (posterior cingulate cortex)	67 European ancestry Alzheimer's disease cases, 323 European ancestry mild cognitive impairment cases, 196 European ancestry individuals with normal cognition	NA	10p14		rs10795879-?	0.375	3E-6		0.049	unit decrease	Illumina [278989]	N
674	chr10	11779907	11779908	rs718641	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10p14	NR	rs718641-C	0.305569	1E-10		0.0216746	[0.015-0.028] unit decrease	NR [19129689] (imputed)	N
675	chr10	11797499	11797500	rs35986488	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs35986488-A	0.06969	9E-21	(ECHDC3)	0.1736	NR unit decrease	Illumina [1671387] (imputed)	N
675	chr10	11804451	11804452	rs11257311	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10p14	ECHDC3	rs11257311-G	NR	2E-8	(MR-MEGA)	0.017	[0.0045-0.0295] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
675	chr10	11804451	11804452	rs11257311	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	2,469 African American individuals	NA	10p14	ECHDC3	rs11257311-G	NR	4E-9		0.186	[0.12-0.25] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
675	chr10	11804451	11804452	rs11257311	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10p14	ECHDC3	rs11257311-G	NR	2E-8	(MR-MEGA)	0.0176	[0.0051-0.0301] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
675	chr10	11804451	11804452	rs11257311	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals	NA	10p14	ECHDC3	rs11257311-G	NR	4E-9		0.1865	[0.12-0.25] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
675	chr10	11836091	11836092	rs118033845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10p14		rs118033845-A	0.034636	8E-24		0.06276754	[0.051-0.075] unit increase	Affymetrix [93095623] (imputed)	N
675	chr10	11836091	11836092	rs118033845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10p14	intergenic	rs118033845-A	0.0356	6E-12		0.06951009	[0.05-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
675	chr10	11848216	11848217	rs72766324	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs72766324-A	0.05749	9E-13	(ECHDC3)	0.1469	NR unit decrease	Illumina [1671387] (imputed)	N
675	chr10	11848791	11848792	rs12358475	25526632	Rafiq S	2014-12-19	PLoS One	A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis.	Breast cancer (survival)	1,341 European ancestry cases	1,523 European ancestry cases	10p14	C10orf47, ECHDC3	rs12358475-?	NR	2E-6		1.33	[1.19-1.49]	Illumina [6500000] (imputed)	N
675	chr10	11860332	11860333	rs58829444	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	10p14	NR	rs58829444-?	NR	7E-6		2.956	NR unit increase	Affymetrix [at least 600000] (imputed)	N
675	chr10	11870969	11870970	rs6602542	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p14	ECHDC3	rs6602542-?	NR	7E-6	(CE 20:4)	0.19779429	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
675	chr10	11877436	11877437	rs1324645	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p14	ECHDC3	rs1324645-?	NR	5E-6	(CE 20:5)	0.21590447	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
675	chr10	11882275	11882276	rs116212251	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs116212251-G	0.01394	2E-8	(BHMT)	5.175	NR unit increase	Illumina [1671387] (imputed)	N
675	chr10	11889697	11889698	rs11257358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p14		rs11257358-?	NR	4E-9				NR [~ 8900000] (imputed)	N
675	chr10	11891164	11891165	rs112635931	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	10p14	PROSER2, PROSER2-AS1	rs112635931-A	0.0512	7E-9		3.187	[2.11-4.27] unit increase	Illumina [3515000] (imputed)	N
675	chr10	11895096	11895097	rs11593377	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10p14	PROSER2-AS1, PROSER2	rs11593377-C	0.205	5E-18		0.03885261	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p14	PROSER2-AS1	rs34346558-C	0.206337	6E-12		0.019184181	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10p14	PROSER2-AS1	rs34346558-C	0.206339	5E-33		0.033219986	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs34346558-C	0.195506	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p14	NR	rs34346558-C	0.207224	5E-16		0.018337	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p14	NR	rs34346558-A	0.791071	5E-49				Affymetrix, Illumina [17210439] (imputed)	N
675	chr10	11904833	11904834	rs34346558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10p14	NR	rs34346558-A	0.793301	9E-51		0.03546	[0.031-0.04] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
675	chr10	11906605	11906605	rs34528557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p14		rs34528557-CT	NR	9E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
675	chr10	11907981	11907982	rs10082444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p14		rs10082444-C	NR	9E-16		0.0137	[0.01-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
675	chr10	11907981	11907982	rs10082444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p14		rs10082444-?	NR	1E-22				NR [~ 8900000] (imputed)	N
675	chr10	11926443	11926444	rs7089710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p14	NR	rs7089710-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
676	chr10	11934904	11934905	rs4468251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p14	PROSER2-AS1	rs4468251-G	0.577114	3E-11		0.015339435	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
676	chr10	11991309	11991310	rs11819344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10p14		rs11819344-?	NR	4E-9				NR [~ 8900000] (imputed)	N
676	chr10	12051573	12051574	rs7899260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p14		rs7899260-?	NR	2E-9				NR [~ 8900000] (imputed)	N
677	chr10	12104987	12104988	rs78114187	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10p14	UPF2	rs78114187-T	0.00856804273372125	6E-6		0.013998	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
677	chr10	12105316	12105317	rs7070413	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs7070413-A	0.4913	7E-12	(DHTKD1)	0.01916	NR unit increase	Illumina [1671387] (imputed)	N
677	chr10	12110517	12110518	rs7894615	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs7894615-G	0.4164	9E-11	(DHTKD1)	0.01852	NR unit decrease	Illumina [1671387] (imputed)	N
677	chr10	12118994	12118994	rs61096299	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs61096299-A	0.4495	9E-19	(DHTKD1)	0.02414	NR unit increase	Illumina [1671387] (imputed)	N
677	chr10	12133251	12133252	rs7094385	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10p14	DHTKD1	rs7094385-G	0.22	4E-21	(4-ureidobutyrate)	0.268	[0.21-0.32] unit increase	Illumina [7750367] (imputed)	N
677	chr10	12146857	12146858	rs9424148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs9424148-C	0.2422	3E-17	(DHTKD1)	0.02659	NR unit increase	Illumina [1671387] (imputed)	N
677	chr10	12180806	12180807	rs55895004	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p14	NR	rs55895004-?	NR	1E-8				Illumina [7760689] (imputed)	N
677	chr10	12182120	12182121	rs74474517	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p14	NR	rs74474517-A	0.04878	5E-9	(TXNL1)	0.02817	NR unit increase	Illumina [1671387] (imputed)	N
678	chr10	12208306	12208307	rs1053403	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	10p14	NUDT5	rs1053403-?		3E-8				Illumina [5041948] (imputed)	N
678	chr10	12209751	12209752	rs6686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p14		rs6686-?	NR	2E-17				NR [~ 8900000] (imputed)	N
678	chr10	12227305	12227306	rs76605301	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	10p14	NR	rs76605301-T	0.027	3E-6	(Latino)	2.14	[1.56-2.94]	Affymetrix [9737707] (imputed)	N
678	chr10	12227579	12227580	rs3780866	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	10p14		rs3780866-G		8E-6		1.17	[1.09-1.26]	Affymetrix, Illumina [1722107] (imputed)	N
678	chr10	12240679	12240680	rs12775058	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	10p14		rs12775058-C	0.973	7E-6		0.794	[0.72-0.876]	Affymetrix, Illumina [NR] (imputed)	N
678	chr10	12242325	12242326	rs12248718	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	10p13	chr10mb12	rs12248718-G	0.301609858	4E-7		0.1747	[0.11-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
678	chr10	12242325	12242326	rs12248718	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p13	CDC123	rs12248718-A		7E-7		0.21	unit decrease	Affymetrix [at least 2696785] (imputed)	N
678	chr10	12242325	12242326	rs12248718	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p13	CDC123	rs12248718-A		5E-8		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
678	chr10	12252216	12252217	rs2271804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p13		rs2271804-?	NR	2E-14				NR [~ 8900000] (imputed)	N
678	chr10	12253596	12253597	rs12221133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10p13	NR	rs12221133-A	NR	2E-25		0.0299	[0.024-0.036] unit increase	Affymetrix [9000000] (imputed)	N
678	chr10	12253596	12253597	rs12221133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10p13	NR	rs12221133-A	NR	6E-19		0.026	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
678	chr10	12253596	12253597	rs12221133	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	10p13	CDC123	rs12221133-?	NR	1E-11		0.04633	[0.033-0.06] unit increase novel	Illumina [6108953] (imputed)	N
678	chr10	12255174	12255175	rs7896600	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	10p13	CDC123	rs7896600-G	0.7416	1E-9				Affymetrix, Illumina [2331072] (imputed)	N
678	chr10	12255656	12255657	rs11257600	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	10p13	CDC123	rs11257600-T	0.31	6E-17		1.16	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
678	chr10	12277991	12277992	rs7068966	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10p13	CDC123	rs7068966-C	0.49	6E-23		1.1	[1.08-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
678	chr10	12277991	12277992	rs7068966	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Lung function (FEV1/FVC)	11,822 Hispanic individuals	up to 4,162 Hispanic individuals, up to 876 African American individuals, up to 94,612 European ancestry individuals	10p13	Intergenic	rs7068966-T		1E-6		0.06	[NR] unit increase	Illumina [2232944] (imputed)	N
678	chr10	12277991	12277992	rs7068966	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	10p13	CDC123	rs7068966-?	NR	2E-11	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
678	chr10	12277991	12277992	rs7068966	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10p13	CDC123	rs7068966-T	0.52	6E-13	(FEV1/FVC)	0.033	[0.023-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
678	chr10	12277991	12277992	rs7068966	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10p13	CDC123	rs7068966-T	0.52	3E-12	(FEV1)	0.029	[0.021-0.037] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
678	chr10	12278020	12278021	rs7090277	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10p13	CDC123	rs7090277-?	NR	8E-14		0.0363463	[0.027-0.046] unit decrease	Illumina [4804024] (imputed)	N
678	chr10	12278020	12278021	rs7090277	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10p13	CDC123	rs7090277-A	0.5165	9E-36		0.0314	[0.026-0.036] unit increase	Affymetrix [19819130] (imputed)	N
678	chr10	12278020	12278021	rs7090277	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10p13	CDC123	rs7090277-A	0.5165	7E-11		0.0152	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
678	chr10	12278020	12278021	rs7090277	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10p13	CDC123	rs7090277-A	0.5165	4E-67		0.0409	[0.036-0.046] unit increase	Affymetrix [19819130] (imputed)	N
678	chr10	12278020	12278021	rs7090277	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10p13	CDC123	rs7090277-A	0.5165	1E-47		0.0336	[0.029-0.038] unit increase	Affymetrix [19819130] (imputed)	N
678	chr10	12278020	12278021	rs7090277	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10p13	CDC123	rs7090277-A	0.5158	5E-6		0.03	[0.016-0.044] unit increase	Affymetrix [27624732] (imputed)	N
678	chr10	12278020	12278021	rs7090277	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	10p13	CDC123	rs7090277-A	0.5158	2E-16		0.054	[0.04-0.068] unit increase	Affymetrix [27624732] (imputed)	N
678	chr10	12278020	12278021	rs7090277	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10p13	CDC123	rs7090277-A	0.52	1E-11		0.045	[0.031-0.059] unit increase	Affymetrix [up to 27624732] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	6E-16		1.14	[1.11-1.18]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	1E-20			[NR]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	2E-18		1.11	[1.09-1.14]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	5E-20			[NR]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	3E-18		1.11	[1.09-1.14]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	8E-16		1.14	[1.11-1.18]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	10p13	NR	rs57062879-A	0.49	2E-7		1.08	[1.05-1.11]	Affymetrix [9886854] (imputed)	N
678	chr10	12278524	12278525	rs57062879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p13		rs57062879-?	NR	2E-8				NR [~ 8900000] (imputed)	N
678	chr10	12283160	12283163	rs200893788	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	10p13	CDC123	rs200893788-T		1E-12		1.32	[NR]	Illumina [10000000] (imputed)	N
678	chr10	12285734	12285735	rs2001546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs2001546-?	NR	1E-92				NR [~ 8900000] (imputed)	N
678	chr10	12288989	12288990	rs4372354	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	10p13	CDC123	rs4372354-C	NR	5E-13		0.143	[0.1-0.18] unit decrease	Affymetrix [28509962] (imputed)	N
678	chr10	12299634	12299636	rs78420228	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	10p13	CDC123	rs78420228-CA	0.445	2E-10		1.18	[1.12-1.25]	Affymetrix [28509962] (imputed)	N
678	chr10	12300789	12300790	rs7916879	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10p13	CDC123	rs7916879-A	0.364901	4E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
678	chr10	12302356	12302357	rs10906111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10p13		rs10906111-T	0.448949877	2E-30		0.11665467	[0.097-0.137] unit increase	Illumina [13134967] (imputed)	N
678	chr10	12302606	12302607	rs10795945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10p13		rs10795945-C	0.553263	1E-9		0.0200756	[0.014-0.027] unit increase	Illumina [13479178] (imputed)	N
678	chr10	12302606	12302607	rs10795945	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10p13	NR	rs10795945-C	0.5498	4E-27		0.1013	[0.083-0.12] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
678	chr10	12302606	12302607	rs10795945	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10p13	CDC123, CAMK1D	rs10795945-T	0.45	8E-27		1.11	1.09-1.13	Illumina [12557761] (imputed)	N
678	chr10	12302606	12302607	rs10795945	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10p13	CDC123, CAMK1D	rs10795945-C	0.557	1E-9	(Japanese)	0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
678	chr10	12303370	12303371	rs4747971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10p13		rs4747971-C	0.552718	2E-9		0.0169135	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
678	chr10	12303370	12303371	rs4747971	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10p13		rs4747971-C	0.552565223	6E-33		0.89885247	[0.883278455-0.914701128]	Illumina [8919992] (imputed)	N
678	chr10	12303812	12303813	rs61848342	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10p13	intergenic	rs61848342-T	0.6355	6E-10		0.0363	[0.025-0.048] unit decrease	Affymetrix [at least 7947838] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10p13		rs11257655-T	NR	2E-55		0.1084	[0.095-0.122] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10p13		rs11257655-T	NR	3E-40		0.1098	[0.094-0.126] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10p13		rs11257655-T	NR	9E-47		0.0341	[0.029-0.039] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10p13		rs11257655-T	NR	3E-23		0.0231	[0.019-0.028] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	10p13	CDC123	rs11257655-T	0.5012	8E-6		0.0118	[0.0063-0.0173] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
678	chr10	12307893	12307894	rs11257655	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	10p13	CDC123	rs11257655-T	0.2202	2E-13		0.011	[0.0079-0.0141] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	9E-9	(212 ms)	0.0365174	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	8E-9	(256 ms)	0.0382074	[0.025-0.052] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	7E-11	(232 ms)	0.041342	[0.028-0.055] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	6E-11	(246 ms)	0.0418227	[0.029-0.055] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	5E-11	(244 ms)	0.0411734	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	5E-10	(242 ms)	0.0399877	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	5E-10	(222 ms)	0.0383005	[0.025-0.052] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	4E-9	(210 ms)	0.0371042	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	4E-11	(234 ms)	0.0412496	[0.028-0.055] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	4E-10	(240 ms)	0.0401254	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	3E-9	(220 ms)	0.0373495	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	3E-9	(218 ms)	0.03739	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	3E-9	(208 ms)	0.0371231	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	3E-10	(224 ms)	0.0394705	[0.026-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	2E-9	(254 ms)	0.039305	[0.026-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	2E-9	(214 ms)	0.0376618	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	2E-8	(258 ms)	0.0375078	[0.024-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	2E-10	(248 ms)	0.0407737	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	2E-10	(238 ms)	0.0408214	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-9	(252 ms)	0.0394033	[0.026-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-9	(250 ms)	0.0394436	[0.026-0.053] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-9	(216 ms)	0.0380221	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-8	(262 ms)	0.038036	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-8	(260 ms)	0.037911	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-10	(236 ms)	0.0408069	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-10	(230 ms)	0.0409815	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-10	(228 ms)	0.0406024	[0.027-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p13	CDC123	rs11257655-C	0.784965	1E-10	(226 ms)	0.0403699	[0.027-0.054] unit increase	Affymetrix [10000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10p13	NR	rs11257655-C	0.7809	7E-35		0.0907	[0.076-0.105] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10p13	NR	rs11257655-C	0.7044	1E-63		0.0946	[0.084-0.106] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
678	chr10	12307893	12307894	rs11257655	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	10p13	CDC123	rs11257655-?	NR	9E-11				NR [NR]	N
678	chr10	12307893	12307894	rs11257655	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	10p13	Metazoa_SRP	rs11257655-T	0.208417	3E-12		0.09943997	[0.071-0.127] unit increase	Affymetrix [7288503] (imputed)	N
678	chr10	12307893	12307894	rs11257655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10p13		rs11257655-?	NR	4E-14				NR [~ 8900000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10p13	CDC123, CAMK1D	rs11257655-T	0.2184	2E-32		1.09	[1.08-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10p13	CDC123	rs11257655-T	0.206773280772991	2E-17		0.0737	[0.057-0.091] unit increase	NR [5035015] (imputed)	N
678	chr10	12307893	12307894	rs11257655	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	10p13	CDC123, CAMK1D	rs11257655-T	NR	4E-10		1.1279479		Affymetrix, Illumina [~ 13000000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10p13	CDC123, CAMK1D	rs11257655-T	0.24	7E-9		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
678	chr10	12307893	12307894	rs11257655	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10p13	CDC123	rs11257655-T	0.2266	3E-29		0.092	[0.076-0.108] unit increase	Affymetrix, Illumina [NR] (imputed)	N
678	chr10	12307893	12307894	rs11257655	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10p13	CDC123	rs11257655-T	0.2266	3E-10	(EA)	0.0773	[0.053-0.101] unit increase	Affymetrix, Illumina [NR] (imputed)	N
678	chr10	12307893	12307894	rs11257655	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	10p13	CDC123, CAMK1D	rs11257655-T	NR	5E-6	(dominant model)	1.162	[1.1-1.23]	NR [9288881] (imputed)	N
678	chr10	12307893	12307894	rs11257655	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10p13	CDC123, CAMK1D	rs11257655-T	NR	1E-12	(Japanese)	1.11739	[1.08384-1.15199]	Illumina [7521072] (imputed)	N
678	chr10	12307893	12307894	rs11257655	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10p13	CDC123	rs11257655-T	0.23	3E-9		1.06	[1.01-1.11]	Affymetrix, Illumina [2500000] (imputed)	N
678	chr10	12307893	12307894	rs11257655	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	10p13	CDC123	rs11257655-T	0.564	7E-9		1.15	[1.10-1.20]	Illumina [2234194] (imputed)	N
678	chr10	12307893	12307894	rs11257655	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10p13	CDC123, CAMK1D	rs11257655-T	0.231035682630139	2E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
678	chr10	12309138	12309139	rs11257657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10p13		rs11257657-G	0.441351681	1E-41		0.12869164	[0.11-0.15] unit increase	Illumina [13429769] (imputed)	N
678	chr10	12309138	12309139	rs11257657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	10p13		rs11257657-G	0.4599	2E-11		0.0294162	[0.021-0.038] unit increase	Illumina [13466143] (imputed)	N
678	chr10	12309138	12309139	rs11257657	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10p13	CDC123, CAMK1D	rs11257657-G	0.483	1E-61		1.12	[1.11-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
678	chr10	12314996	12314997	rs10906115	20862305	Shu XO	2010-09-16	PLoS Genet	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	10p13	CDC123, CAMK1D	rs10906115-A	0.57	1E-8		1.13	[1.08-1.18]	Affymetrix [590887]	N
679	chr10	12328009	12328010	rs12779790	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10p13	CDC123, CAMK1D	rs12779790-G	0.18	1E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [2202892] (imputed)	N
679	chr10	12350133	12350134	rs10795948	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	10p13	Metazoa_SRP	rs10795948-?	NR	5E-6		2.1276596	[1.54-2.94]	Illumina [654642] (imputed)	N
679	chr10	12389179	12389180	rs2997063	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	10p13	intergenic	rs2997063-T	0.29	6E-6	(female)	0.0513	[0.029-0.073] unit decrease	Illumina [6380737] (imputed)	N
679	chr10	12395099	12395100	rs10752262	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10p13	CAMK1D	rs10752262-?	NR	2E-9		0.012595058	[0.0085-0.0167] unit increase	NR [7306098]	N
679	chr10	12395099	12395100	rs10752262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p13	Intergenic	rs10752262-T	0.4125	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
679	chr10	12395099	12395100	rs10752262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p13		rs10752262-T	0.4192	1E-12		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
679	chr10	12395099	12395100	rs10752262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p13	Intergenic	rs10752262-T	0.4192	9E-13	(MTAG)	0.0096	[0.0071-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
679	chr10	12431366	12431367	rs4451621	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	10p13	intergenic	rs4451621-T	0.536	1E-6		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
679	chr10	12435378	12435379	rs4750211	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	CAMK1D	rs4750211-A	0.3	6E-7	(RQmax)	0.05	[NR] increase	Illumina [899892]	N
679	chr10	12436893	12436894	rs2154248	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p13	CAMK1D	rs2154248-G	0.849726175984135	1E-6	(F_Sutterellaceae_HB)	0.579565	[0.34-0.81] unit increase	Illumina [7711310] (imputed)	N
679	chr10	12438782	12438783	rs10906142	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	CAMK1D	rs10906142-A	0.236	4E-6	(Energy storage )	0.03	[NR] kcal/d increase	Illumina [899892]	N
679	chr10	12438782	12438783	rs10906142	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	CAMK1D	rs10906142-A	0.236	1E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
679	chr10	12438782	12438783	rs10906142	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	CAMK1D	rs10906142-A	0.236	1E-6	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
679	chr10	12439475	12439476	rs10906143	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p13	CAMK1D	rs10906143-T	0.308781045453108	5E-6	(G_Prevotella_RNT)	0.141654	[0.081-0.203] unit increase	Illumina [7711310] (imputed)	N
680	chr10	12482369	12482370	rs111486731	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	10p13	NR	rs111486731-A	NR	5E-6		2.68	NR	Illumina [6470615] (imputed)	N
680	chr10	12482906	12482907	rs147729365	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p13	NR	rs147729365-?	NR	4E-7	(Japanese)	0.7133	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
680	chr10	12497746	12497747	rs1108131	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	10p13	CAMK1D	rs1108131-?	NR	9E-7				Illumina [491617]	N
680	chr10	12504312	12504313	rs117687547	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		10p13	NR	rs117687547-T	0.031	5E-6		1.83	[1.41-2.36]	Illumina [~ 8000000] (imputed)	N
680	chr10	12520662	12520663	rs12784955	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	1,068 Japanese ancestry individuals	NA	10p13	CAMK1D	rs12784955-T	0.21	1E-6	(female)	0.0923	[0.055-0.129] unit decrease	Illumina [6380737] (imputed)	N
680	chr10	12531157	12531158	rs142920219	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	10p13	CAMK1D	rs142920219-C	0.9218999999999999	6E-6		1.1018555		NR [9372253] (imputed)	N
680	chr10	12531285	12531286	rs75943238	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p13	CAMK1D	rs75943238-T	0.00882587562419356	4E-6	(F_Streptococcaceae_HB)	1.37956	[0.8-1.96] unit decrease	Illumina [7711310] (imputed)	N
680	chr10	12531285	12531286	rs75943238	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p13	CAMK1D	rs75943238-T	0.00882587562419356	2E-6	(G_Streptococcus_HB)	1.37377	[0.81-1.94] unit decrease	Illumina [7711310] (imputed)	N
681	chr10	12597880	12597881	rs12569857	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10p13	CDC123, CAMK1D	rs12569857-C	0.3	3E-7		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
681	chr10	12601438	12601439	rs2648708	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		10p13	NR	rs2648708-T	NR	8E-6	(EA)	0.0696	[-0.10002--0.03918] mg/dl decrease	Illumina [up to 507950]	N
681	chr10	12645940	12645941	rs7902334	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	10p13	CAMK1D	rs7902334-?	0.4545	5E-6		6.771	[NR]	Affymetrix [559609]	N
681	chr10	12665137	12665138	rs184224980	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	10p13	CAMK1D	rs184224980-C	0.1707	3E-6		1.6196955	[1.42-1.82]	Illumina [10736316] (imputed)	N
681	chr10	12673009	12673010	rs10906187	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	10p13	CAMK1D	rs10906187-G	0.3749	2E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
681	chr10	12675060	12675061	rs10906189	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	10p13	CAMK1D	rs10906189-A	0.58	6E-6	(Thiazides)			Affymetrix, Illumina [~ 2500000] (imputed)	N
681	chr10	12692576	12692577	rs7072694	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10p13	CAMK1D	rs7072694-A	0.4773	5E-9		0.011819088	[0.0079-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
681	chr10	12696561	12696562	rs61663121	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p13	NR	rs61663121-?	NR	7E-6		4.504	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
681	chr10	12698438	12698439	rs185932673	33243845	Strausz S	2020-11-26	Eur Respir J	Genetic analysis of obstructive sleep apnoea discovers a strong association with cardiometabolic health.	Obstructive sleep apnea (BMI adjusted)	12,759 Finnish ancestry cases, 146,972 Finnish ancestry controls	NR	10p13	CAMK1D	rs185932673-T	0.0033	9E-6		1.75	[1.37-2.26]	Affymetrix, Illumina [NR] (imputed)	N
681	chr10	12702568	12702569	rs75263140	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	10p13	CAMK1D	rs75263140-A	0.974	6E-6		0.172	[0.098-0.246] unit decrease	Illumina [6150213] (imputed)	N
681	chr10	12711948	12711949	rs7905192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p13		rs7905192-T	0.572	3E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
681	chr10	12711948	12711949	rs7905192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p13	Intergenic	rs7905192-T	0.572	3E-11	(MTAG)	0.0088	[0.0063-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
682	chr10	12726060	12726061	rs2895526	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	10p13	CAMK1D	rs2895526-A	NR	5E-10		0.0086	[0.0059-0.0113] unit decrease	Affymetrix [9304965] (imputed)	N
682	chr10	12740081	12740082	rs10906209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs10906209-?	NR	2E-9				NR [~ 8900000] (imputed)	N
682	chr10	12749061	12749062	rs45479699	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	10p13	NR	rs45479699-A	NR	8E-6	(phenotype 2)	5.62	[NR]	Illumina [> 8000000] (imputed)	N
682	chr10	12756712	12756713	rs11257952	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p13	Intergenic	rs11257952-A	0.5374	3E-11	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
682	chr10	12820210	12820211	rs3802569	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p13		rs3802569-?	NR	1E-12				NR [~ 8900000] (imputed)	N
682	chr10	12828452	12828453	rs914328	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p13	CAMK1D	rs914328-?	NR	5E-9		0.01684899	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
682	chr10	12836762	12836763	rs1929384	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	10p13		rs1929384-T	NR	7E-6		1.13	[1.07-1.19]	Illumina [7105229] (imputed)	N
683	chr10	12856056	12856057	rs10795984	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10p13	NR	rs10795984-A	NR	1E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
683	chr10	12872879	12872880	rs2431623	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	10p13	intergenic	rs2431623-G	0.369	9E-6		0.091	[0.05-0.132] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
683	chr10	12875207	12875208	rs10906233	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	10p13	CAMK1D	rs10906233-C	0.979	4E-6		0.288	[0.17-0.41] unit decrease	Illumina [6150213] (imputed)	N
683	chr10	12918763	12918764	rs7909670	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10p13	CCDC3	rs7909670-T	0.44	3E-9		0.021	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
683	chr10	12933925	12933926	rs1888665	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	10p13	Intergenic	rs1888665-C	NR	2E-6	(adjusted for total body fat)	0.0837	[0.049-0.118] unit increase	Illumina [8511049] (imputed)	N
683	chr10	12935124	12935125	rs4748008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p13	CCDC3	rs4748008-C	NR	3E-8		0.0173653	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
683	chr10	12937633	12937634	rs74120710	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	10p13	CCDC3, CAMK1D	rs74120710-T	0.157	3E-7				Affymetrix [432921]	N
683	chr10	12943107	12943108	rs35092545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p13	CCDC3	rs35092545-T	NR	9E-11		0.0221799	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
683	chr10	12943107	12943108	rs35092545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10p13	CCDC3	rs35092545-T	NR	6E-9		0.019802	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
683	chr10	12943107	12943108	rs35092545	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p13	CCDC3	rs35092545-T	0.2896	6E-12		0.0144	[0.01-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
683	chr10	12943107	12943108	rs35092545	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p13	CCDC3	rs35092545-T	0.2934	5E-7		0.0379	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
683	chr10	12943110	12943111	rs35954730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p13		rs35954730-?	NR	9E-71				NR [~ 8900000] (imputed)	N
683	chr10	12944645	12944646	rs35859988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p13		rs35859988-T	NR	5E-61		0.0244	[0.021-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
683	chr10	12945179	12945180	rs35741360	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p13	CCDC3	rs35741360-?	NR	3E-32		0.042033065	[0.035-0.049] unit decrease	Illumina [27896057] (imputed)	N
683	chr10	12945179	12945180	rs35741360	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10p13	NR	rs35741360-?	NR	5E-7		0.0086824	[0.0053-0.0121] unit increase	Affymetrix [805426] (imputed)	N
683	chr10	12947038	12947039	rs12570009	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p13	NR	rs12570009-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
683	chr10	12947647	12947648	rs61852237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10p13		rs61852237-T	0.203076	6E-27		0.0269796	[0.022-0.032] unit decrease	Illumina [13479295] (imputed)	N
683	chr10	12955137	12955138	rs4748012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p13	CCDC3	rs4748012-G	NR	2E-8		0.0176299	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
683	chr10	12955353	12955354	rs56106509	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p13	CCDC3	rs56106509-C	0.2863	8E-6		0.0314	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
683	chr10	12974823	12974824	rs1251015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10p13	CCDC3	rs1251015-G	NR	5E-10		0.0201451	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
683	chr10	12974823	12974824	rs1251015	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p13	NR	rs1251015-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
684	chr10	13052018	13052019	rs185871167	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p13		rs185871167-A	0.01	4E-22		9.67	z score increase	Affymetrix [9061022] (imputed)	N
684	chr10	13052018	13052019	rs185871167	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p13		rs185871167-A	0.01	8E-18		8.6	z score increase	Affymetrix [9061022] (imputed)	N
684	chr10	13052018	13052019	rs185871167	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p13	NR	rs185871167-A	0.0108	1E-17				NR [9056863] (imputed)	N
684	chr10	13090050	13090051	rs12356199	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	10p13	CCDC3, RPL5P25, OPTN	rs12356199-A	0.06	5E-8		0.79	[0.5-1.08] unit decrease	Illumina [8446615] (imputed)	N
684	chr10	13090050	13090051	rs12356199	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	10p13	CCDC3, RPL5P25, OPTN	rs12356199-A	0.06	4E-6		0.55	[0.31-0.79] unit decrease	Illumina [8454806] (imputed)	N
684	chr10	13094865	13094866	rs11592430	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10p13		rs11592430-?	NR	4E-8		0.5383	[0.35-0.73] unit decrease	Affymetrix [NR] (imputed)	N
684	chr10	13099761	13099762	rs61853201	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10p13		rs61853201-?	NR	3E-8		0.538	[0.35-0.73] unit decrease	Affymetrix [NR] (imputed)	N
684	chr10	13100268	13100269	rs9787488	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10p13		rs9787488-?	NR	5E-8		0.5305	[0.34-0.72] unit decrease	Affymetrix [NR] (imputed)	N
684	chr10	13103284	13103285	rs525455	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10p13	MST151	rs525455-G	0.459	7E-7	(ADP)			Affymetrix, Illumina [~ 2330000] (imputed)	N
685	chr10	13142456	13142457	rs112628075	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	10p13	CCDC3	rs112628075-A	0.07	2E-6		0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
685	chr10	13155725	13155726	rs1561570	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	10p13	OPTN	rs1561570-T	0.53	4E-38		1.67	[1.54-1.80]	Illumina [2487078] (imputed)	N
685	chr10	13155725	13155726	rs1561570	20436471	Albagha OM	2010-05-02	Nat Genet	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	10p13	OPTN	rs1561570-?	0.55	6E-13		1.54	[1.37-1.72]	Illumina [294663]	N
685	chr10	13182648	13182649	rs7098640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p13		rs7098640-?	NR	5E-9				NR [~ 8900000] (imputed)	N
685	chr10	13203830	13203831	rs77359387	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p13	MCM10	rs77359387-T	NR	3E-6	(EA)			Illumina [up to 11995908] (imputed)	N
685	chr10	13203830	13203831	rs77359387	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p13	MCM10	rs77359387-T	NR	3E-6				Illumina [up to 11995908] (imputed)	N
685	chr10	13219165	13219166	rs114450321	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10p13	NR	rs114450321-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
686	chr10	13239650	13239651	rs2274110	34185429	Tian J	2021-06-01	Clin Transl Med	Aberrant MCM10 SUMOylation induces genomic instability mediated by a genetic variant associated with survival of esophageal squamous cell carcinoma.	Survival time in esophageal squamous cell carcinoma	904 Han Chinese ancestry cases	503 Han Chinese ancestry cases	10p13	MCM10	rs2274110	NR	1E-7		1.61	[1.35-1.93]	Illumina [Exome array]	N
686	chr10	13240406	13240407	rs2274111	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p13	NR	rs2274111-G	0.04181	1E-8	(TAGLN)	0.1908	NR unit increase	Illumina [1671387] (imputed)	N
686	chr10	13258319	13258320	rs12778233	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	10p13	UCMA	rs12778233-?		2E-6				Illumina [7405822] (imputed)	N
686	chr10	13268854	13268855	rs2147278	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p13	NR	rs2147278-T	0.341	4E-16	(Unique cartilage matrix-associated protein, UCMA.10977.55.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
686	chr10	13276533	13276534	rs2093847	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p13	UCMA	rs2093847-T	0.107	3E-53	(Unique cartilage matrix-associated protein, UCMA.10977.55.3)	0.59	[0.51-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
686	chr10	13310070	13310071	rs10796051	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10p13	intergenic	rs10796051-C	0.4488	7E-6		0.0532	[0.030-0.076] unit increase	Illumina [2400000] (imputed)	N
686	chr10	13330394	13330395	rs7901902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p13	SEPHS1	rs7901902-?	NR	9E-6	(kynurenic acid)	1.353253	[0.75-1.95] unit increase	Affymetrix [at least 2500000] (imputed)	N
686	chr10	13340895	13340896	rs189379749	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	10p13	AL138764.1	rs189379749-G	0.77747	6E-6		0.172852	[0.098-0.248] unit decrease	Illumina [6952813] (imputed)	N
686	chr10	13346227	13346228	rs11598634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10p13	NR	rs11598634-C	NR	4E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
686	chr10	13355130	13355131	rs1095368	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1095368-C	0.437467493541203	7E-7	(IGP49)	0.1528	[0.092-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
686	chr10	13358582	13358583	rs113386487	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	10p13	NR	rs113386487-T	0.020000000000000018	2E-6		1.4925373	[1.27-1.79]	NR [at least 8482392] (imputed)	N
686	chr10	13358582	13358583	rs113386487	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	10p13	NR	rs113386487-T	0.020000000000000018	2E-6		1.4925373	[1.27-1.79]	NR [at least 8482392] (imputed)	N
686	chr10	13358582	13358583	rs113386487	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	10p13	NR	rs113386487-T	0.020000000000000018	1E-6		2.1276596	[1.56-2.86]	NR [8482392] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414548764129951	6E-7	(IGP70)	0.1581	[0.096-0.22] unit increase	Illumina [~ 2500000] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414548764129951	4E-7	(IGP71)	0.1618	[0.099-0.224] unit increase	Illumina [~ 2500000] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414548764129951	3E-7	(IGP64)	0.1637	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414548764129951	2E-7	(IGP66)	0.1661	[0.1-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414510834817453	4E-7	(IGP72)	0.1616	[0.099-0.224] unit decrease	Illumina [~ 2500000] (imputed)	N
686	chr10	13361975	13361976	rs1747683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs1747683-G	0.414510834817453	1E-7	(IGP68)	0.1694	[0.11-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
686	chr10	13363045	13363046	rs10508459	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs10508459-T	0.47438586013363	2E-6	(IGP9)	0.1446	[0.085-0.204] unit decrease	Illumina [~ 2500000] (imputed)	N
687	chr10	13370778	13370779	rs3824655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10p13	NR	rs3824655-C	0.589735	7E-14		0.00589852	[0.0042-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
687	chr10	13370778	13370779	rs3824655	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10p13	NR	rs3824655-C	0.589735	1E-11		0.00604627	[0.0042-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
687	chr10	13370957	13370958	rs3781085	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10p13	NR	rs3781085-T	0.585423	4E-9		0.00574707	[0.0035-0.008] unit increase	Affymetrix [16582621] (imputed)	N
687	chr10	13370957	13370958	rs3781085	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10p13	NR	rs3781085-T	0.585423	1E-7		0.00588518	[0.0035-0.0083] unit increase	Affymetrix [16582614] (imputed)	N
687	chr10	13377991	13377992	rs74795203	33560138	Dube MP	2021-02-09	Circ Genom Precis Med	Pharmacogenomics of the Efficacy and Safety of Colchicine in COLCOT.	Gastrointestinal event in colchicine-treated recent myocardial infarction (time to event)	187 European ancestry cases, 580 European ancestry controls	NA	10p13	NR	rs74795203-G	0.06	3E-8		2.51	[1.82-3.47]	Illumina [4468817] (imputed)	N
687	chr10	13413912	13413913	rs10906361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	10p13	SEPHS1, BEND7	rs10906361-A	0.3571	6E-6		0.1197	[0.068-0.171] unit increase	NR [NR] (imputed)	N
687	chr10	13415960	13415961	rs61610071	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	10p13	SEPHS1	rs61610071-G		2E-6	(AA)	9.02	[1.31-62.00]	Affymetrix, Illumina [NR] (imputed)	N
687	chr10	13436194	13436195	rs72783371	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	10p13	BEND7	rs72783371-A	0.92	8E-7		0.067	unit increase (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
687	chr10	13474368	13474369	rs113306707	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial total emptying fraction	35,658 British ancestry individuals	NA	10p13		rs113306707-?	NR	5E-8		0.582	[0.37-0.79] unit decrease	Affymetrix [10600000] (imputed)	N
687	chr10	13495240	13495241	rs7096540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10p13		rs7096540-C	NR	3E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
688	chr10	13523936	13523937	rs10906391	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10p13	BEND7	rs10906391-T	0.3221	1E-13		0.121	[0.089-0.153] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
688	chr10	13530216	13530217	rs17153352	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p13	NR	rs17153352-T	0.822655938139742	7E-6	(IGP40)	0.2041	[0.12-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
688	chr10	13532647	13532648	rs9329342	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p13		rs9329342-C	0.603	4E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
688	chr10	13532647	13532648	rs9329342	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p13	NR	rs9329342-T	0.391	2E-13		0.00808417	[0.0059-0.0102] unit decrease	NR [9732723] (imputed)	N
688	chr10	13532647	13532648	rs9329342	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10p13	NR	rs9329342-T	0.395	3E-10		0.00935501	[0.0064-0.0123] unit increase	NR [9732723] (imputed)	N
688	chr10	13533052	13533053	rs11258417	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p13	NR	rs11258417-T	0.391	3E-8		0.014513622	[0.0094-0.0196] unit decrease	NR [~ 10000000] (imputed)	N
688	chr10	13534233	13534234	rs7916672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10p13	BEND7	rs7916672-T	0.60028	4E-10		0.01412915	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
688	chr10	13534233	13534234	rs7916672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p13	BEND7	rs7916672-T	0.600296	3E-11		0.015063964	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
688	chr10	13534233	13534234	rs7916672	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10p13	BEND7	rs7916672-T	0.58	4E-8		0.35	[0.23-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
688	chr10	13534233	13534234	rs7916672	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10p13	BEND7	rs7916672-T	0.5799	2E-7		0.349	[0.22-0.48] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
688	chr10	13536085	13536086	rs11258419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs11258419-G	0.556407	2E-18				Affymetrix, Illumina [23114412] (imputed)	N
688	chr10	13537203	13537204	rs12770479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10p13		rs12770479-?	NR	2E-8				NR [~ 8900000] (imputed)	N
688	chr10	13540868	13540869	rs11258422	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10p13	NR	rs11258422-C	0.4091	3E-9		0.0241	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
688	chr10	13543845	13543846	rs11297588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p13	BEND7	rs11297588-C	0.5824	4E-16		0.01831256	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
688	chr10	13543845	13543846	rs11297588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10p13	BEND7	rs11297588-C	0.582442	2E-18		0.01974485	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
688	chr10	13544284	13544285	rs7075477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10p13		rs7075477-C	NR	3E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
688	chr10	13544284	13544285	rs7075477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs7075477-C	0.513009	3E-14				Affymetrix, Illumina [24649327] (imputed)	N
688	chr10	13547404	13547405	rs61833902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p13		rs61833902-T	NR	3E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
688	chr10	13549461	13549462	rs10160101	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10p13	BEND7	rs10160101-C	0.4018	1E-8		0.011641357	[0.0076-0.0157] unit decrease	Affymetrix [11514654] (imputed)	N
688	chr10	13552974	13552975	rs7072066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p13		rs7072066-?	NR	1E-8				NR [~ 8900000] (imputed)	N
688	chr10	13557944	13557945	rs2399972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p13	BEND7	rs2399972-C	0.331482	2E-12		0.016562285	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
688	chr10	13557944	13557945	rs2399972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p13	BEND7	rs2399972-C	0.331488	8E-11		0.015259838	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
688	chr10	13566203	13566204	rs878017	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10p13	NR	rs878017-G	0.4591	1E-8		0.0348	[0.023-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
688	chr10	13573635	13573636	rs4750377	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	10p13	NR	rs4750377-A		9E-6				Illumina [458865]	N
688	chr10	13605981	13605982	rs6602665	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	10p13	NR	rs6602665-C	NR	7E-7	(Hispanic)	4.72	[2.89-6.54] unit increase	Affymetrix [14000000] (imputed)	N
688	chr10	13606489	13606490	rs6602666	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	10p13	BEND7, PRPF18	rs6602666-G	NR	5E-9		4.03	[2.68-5.37] unit increase	Affymetrix [14000000] (imputed)	N
688	chr10	13613611	13613611	rs35674838	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	10p13	NR	rs35674838-GA	0.2765	3E-6		0.158	[0.092-0.224] unit decrease	Illumina [10677593] (imputed)	N
689	chr10	13650031	13650032	rs2478118	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	10p13	PRPF18	rs2478118-T	NR	5E-6	(Dominant)	1.61	[1.30-1.99]	Affymetrix, Illumina [1621689] (imputed)	N
689	chr10	13667730	13667731	rs7089227	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	10p13	PRPF18	rs7089227-G	0.41	7E-6	(Dominant)	1.99	[1.37-2.90]	Illumina [555600]	N
689	chr10	13673527	13673528	rs138071473	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10p13	PRPF18	rs138071473-T	1.0	5E-6	(AA)	0.698	unit increase	Illumina [NR] (imputed)	N
689	chr10	13681714	13681715	rs10906435	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p13		rs10906435-C	0.43	7E-12		6.87	z score increase	Affymetrix [9061022] (imputed)	N
689	chr10	13681714	13681715	rs10906435	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p13		rs10906435-C	0.43	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
689	chr10	13685187	13685188	rs10508465	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p13	NR	rs10508465-C	0.4338	3E-10				NR [9056863] (imputed)	N
689	chr10	13688797	13688798	rs56161216	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p13	NR	rs56161216-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
689	chr10	13732318	13732319	rs7079380	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	10p13	FRMD4A	rs7079380-?	NR	6E-6	(Adjusted for BMI)	1.25	[1.14-1.37]	Illumina [at least 8248570] (imputed)	N
689	chr10	13734800	13734801	rs17153734	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p13	NR	rs17153734-?	NR	1E-22				Affymetrix [NR]	N
689	chr10	13737767	13737768	rs11258533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10p13		rs11258533-T	NR	1E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
689	chr10	13737767	13737768	rs11258533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10p13		rs11258533-T	NR	6E-10		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p13	FRMD4A	rs11258533-T	0.458288	1E-15		0.018045718	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p13	FRMD4A	rs11258533-T	0.458278	3E-15		0.017723652	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs11258533-T	0.402544	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p13	NR	rs11258533-T	0.455537	6E-15		0.014689	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs11258533-T	0.403867	2E-17				Affymetrix, Illumina [24653286] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10p13	NR	rs11258533-T	0.455271	2E-18		0.016455	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs11258533-T	0.405066	7E-17				Affymetrix, Illumina [24558453] (imputed)	N
689	chr10	13737767	13737768	rs11258533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p13	NR	rs11258533-T	0.455234	4E-18		0.016255	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
689	chr10	13737767	13737768	rs11258533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p13		rs11258533-?	NR	6E-16				NR [~ 8900000] (imputed)	N
689	chr10	13740313	13740314	rs17627309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs17627309-?	NR	1E-13				NR [~ 8900000] (imputed)	N
689	chr10	13740916	13740917	rs1887004	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	10p13	AL157392.1	rs1887004-C	0.35114	7E-10		1.0526316	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
689	chr10	13741033	13741034	rs1830992	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	10p13	FRMD4A	rs1830992-A	0.33916	4E-10		0.07104762	[0.049-0.093] unit increase	Affymetrix [7260263] (imputed)	N
689	chr10	13742275	13742275	rs574503830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p13	FRMD4A	rs574503830-TCC	0.471536	3E-12		0.016464587	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
689	chr10	13742276	13742276	rs34428699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p13		rs34428699-TCC	NR	3E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
689	chr10	13749227	13749228	rs11258541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10p13	FRMD4A	rs11258541-A	0.385786	4E-36		0.028694535	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
689	chr10	13749227	13749228	rs11258541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs11258541-G	0.617436	6E-44				Affymetrix, Illumina [22063850] (imputed)	N
689	chr10	13749227	13749228	rs11258541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10p13	NR	rs11258541-G	0.613192	8E-47		0.027937	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
689	chr10	13749227	13749228	rs11258541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10p13		rs11258541-?	NR	1E-36				NR [~ 8900000] (imputed)	N
689	chr10	13755543	13755544	rs1541010	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	10p13	FRMD4A	rs1541010-A	0.28	1E-6		0.15	[0.09-0.21] unit increase	Illumina [~ 318327]	N
689	chr10	13757764	13757765	rs12413816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10p13	FRMD4A	rs12413816-T	0.3789	1E-16		0.03035869	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
690	chr10	13772904	13772905	rs11258564	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10p13	FRMD4A	rs11258564-G	NR	9E-10		0.0246085	[0.016-0.033] unit increase	Affymetrix [16832071] (imputed)	N
690	chr10	13790264	13790265	rs10906466	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p13	intergenic	rs10906466-A	0.29	8E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
690	chr10	13795470	13795471	rs4750407	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	10p13	FRMD4A, PRPF18	rs4750407-A	0.3	2E-7		1.27	[1.16-1.40]	Illumina [792342]	N
690	chr10	13865504	13865505	rs12263011	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	10p13	NR	rs12263011-?	NR	5E-6		0.07	NR unit increase	Affymetrix [388620]	N
690	chr10	13868854	13868855	rs11258652	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	10p13	FRMD4A	rs11258652-C		4E-23		0.0099	[0.0079-0.0119] unit increase	Affymetrix [13304133] (imputed)	N
691	chr10	13906612	13906613	rs117970048	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	10p13	NR	rs117970048-?		5E-6		0.025	[0.014-0.036] unit decrease	Illumina [7533529] (imputed)	N
691	chr10	13907235	13907236	rs10906522	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p13	NR	rs10906522-C	0.4708	1E-7	(EA)	0.0332	[0.021-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
691	chr10	13914362	13914363	rs12777098	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p13	NR	rs12777098-?	NR	6E-6	(AA)	19.14	[17.14-21.14]	Illumina [905956]	N
691	chr10	13918413	13918414	rs1418884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs1418884-?	NR	7E-19				NR [~ 8900000] (imputed)	N
691	chr10	13926560	13926561	rs77105852	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	10p13	FRMD4A	rs77105852-?	NR	6E-6		1.16	[1.10-1.23]	Affymetrix, Illumina [39235000] (imputed)	N
691	chr10	13978234	13978235	rs10906545	32222710	Hosgood Iii HD	2020-03-27	Respiration	PRDM15 Is Associated with Risk of Chronic Obstructive Pulmonary Disease in a Rural Population in Chile.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	10p13	FRMD4A	rs10906545-?	NR	3E-6				Illumina [455564] (imputed)	N
691	chr10	13989948	13989949	rs721284	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	10p13	FRMD4A	rs721284-G	0.373837143	1E-6		0.157688	[0.093-0.222] unit increase	Illumina [6952813] (imputed)	N
691	chr10	14013953	14013954	rs4750440	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels	737 European ancestry females	NA	10p13	FRMD4A	rs4750440-?		6E-6				Illumina [up to 550000]	N
692	chr10	14050694	14050695	rs2292368	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	10p13	NR	rs2292368-C		7E-6		0.0825	[0.046-0.119] SD units increase	NR [10700000] (imputed)	N
692	chr10	14051455	14051456	rs2457837	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	10p13	FRMD4A	rs2457837-T	0.22	3E-7	(Turkish)	1.74	[1.41-2.15]	Illumina [up to 547389]	N
692	chr10	14123747	14123748	rs2169323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p13		rs2169323-?	NR	1E-8				NR [~ 8900000] (imputed)	N
692	chr10	14135802	14135803	rs11258861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs11258861-?	NR	6E-8				NR [~ 8900000] (imputed)	N
692	chr10	14145349	14145350	rs142676434	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10p13	intergenic	rs142676434-C	0.0098	2E-6		0.2379	[0.14-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
693	chr10	14189599	14189600	rs12570849	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	10p13	FRMD4A	rs12570849-C	0.05	6E-7		3.26	[2.01-5.28]	Affymetrix [426344]	N
693	chr10	14214909	14214910	rs17154771	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p13	FAM107B	rs17154771-?	NR	6E-7	(carnosine)	0.5192965	[0.31-0.72] unit decrease	Affymetrix [at least 2500000] (imputed)	N
693	chr10	14266084	14266085	rs2895596	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	10p13	FRMD4A	rs2895596-A	0.181	3E-6		0.2863	[0.17-0.41] unit decrease	Illumina [at least 4683137] (imputed)	N
694	chr10	14296715	14296716	rs1218373	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p13	NR	rs1218373-G	0.44	4E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
694	chr10	14308187	14308188	rs113220477	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10p13	FRMD4A	rs113220477-G	NR	1E-7		1.1197	[0.71-1.53] unit increase	Illumina [NR] (imputed)	N
694	chr10	14319424	14319425	rs72778680	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10p13		rs72778680-?	NR	4E-9				Illumina [1128286]	N
694	chr10	14385163	14385164	rs11259022	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	10p13	FRMD4A	rs11259022-A	0.1712	5E-6		0.0448526	NR unit increase	Illumina [560351]	N
694	chr10	14404392	14404393	rs11819533	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	10p13	FRMD4A	rs11819533-C	0.14	5E-6	(female)	1.63	[0.94-2.32] unit increase	Illumina [6380737] (imputed)	N
694	chr10	14407824	14407825	rs139334616	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	10p13	NR	rs139334616-A	NR	4E-6		4.714	[2.45-9.09]	Illumina [13976150] (imputed)	N
695	chr10	14439215	14439216	rs1925935	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	10p13		rs1925935-A	NR	4E-6	10	0.9	unit decrease	Illumina [487523]	N
695	chr10	14441715	14441716	rs11259063	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	10p13	FRMD4A	rs11259063-A	0.22	9E-6		0.957	[0.54-1.38] unit increase	Illumina [6380737] (imputed)	N
695	chr10	14496450	14496451	rs6602730	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10p13	NR	rs6602730-C	0.403	6E-7	(IFNalpha_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
695	chr10	14535112	14535113	rs1887091	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	10p13	intergenic	rs1887091-A	0.36	5E-6	(male)	0.0695	[0.04-0.099] unit decrease	Illumina [6380737] (imputed)	N
696	chr10	14598739	14598740	rs10508477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs10508477-C	0.560328	4E-16				Affymetrix, Illumina [24588908] (imputed)	N
696	chr10	14603428	14603429	rs11259186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p13		rs11259186-G	NR	1E-13		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
696	chr10	14603428	14603429	rs11259186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p13	FAM107B	rs11259186-G	0.539671	8E-30		0.02571107	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
696	chr10	14603428	14603429	rs11259186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p13	FAM107B	rs11259186-G	0.539646	1E-11		0.015282458	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
696	chr10	14603428	14603429	rs11259186	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p13	NR	rs11259186-G	0.538525	9E-18		0.015813	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
696	chr10	14615643	14615644	rs7068157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10p13	FAM107B	rs7068157-A	0.3318	2E-14		0.02935798	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
696	chr10	14633023	14633024	rs4750535	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	10p13	FAM107B	rs4750535-C	NR	3E-10		0.0999	[NR] unit increase	Illumina [11892802] (imputed)	N
697	chr10	14680616	14680617	rs61842737	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p13		rs61842737-G	0.48	6E-17		8.36	z score increase	Affymetrix [9061022] (imputed)	N
697	chr10	14680620	14680621	rs1410071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	10p13	SIX3	rs1410071-?		3E-8				NR [7428630] (imputed)	N
697	chr10	14686780	14686781	rs35772238	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p13		rs35772238-G	0.48	8E-19		8.87	z score increase	Affymetrix [9061022] (imputed)	N
697	chr10	14686780	14686781	rs35772238	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p13	NR	rs35772238-G	0.4823	1E-17				NR [9056863] (imputed)	N
697	chr10	14686780	14686781	rs35772238	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10p13	ATP6V1E2, RHOQ, PIGF, CRIPT	rs35772238-?		9E-11				NR [7428630] (imputed)	N
697	chr10	14686780	14686781	rs35772238	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p13	FAM107B	rs35772238-?		3E-11				NR [7428630] (imputed)	N
697	chr10	14706453	14706454	rs913295	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	10p13	FAM107B	rs913295-G	0.731735	3E-6		1.368605	[1.2-1.56]	NR [7263501] (imputed)	N
697	chr10	14790202	14790203	rs74122981	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10p13	FAM107B, CDNF, RNA5SP302, HSPA14	rs74122981-G	NR	2E-6	(sleep onset irregularity)	0.1622	[0.095-0.229] unit increase	Affymetrix [7141204] (imputed)	N
698	chr10	14856667	14856667	rs149930776	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10p13	NR	rs149930776-?	NR	6E-6		0.00813	[0.0046-0.0117] unit decrease	Affymetrix [9658292] (imputed)	N
698	chr10	14862081	14862082	rs61738953	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDNF	5,364 Icelandic ancestry individuals	NA	10p13		rs61738953-G	0.03536	9E-38		0.611601	[0.52-0.7] unit decrease	Illumina [7506463] (imputed)	N
698	chr10	14862081	14862082	rs61738953	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6	5,363 Icelandic ancestry individuals	NA	10p13		rs61738953-G	0.03536	4E-24		0.497215	[0.4-0.59] unit increase	Illumina [7506463] (imputed)	N
698	chr10	14862081	14862082	rs61738953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p13	CDNF	rs61738953-G	0.042	5E-29	(Cyclic AMP-dependent transcription factor ATF-6 alpha, ATF6.11277.23.3)	0.76	[0.62-0.9] unit increase	Affymetrix [10572788] (imputed)	N
698	chr10	14862081	14862082	rs61738953	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p13	CDNF	rs61738953-G	0.042	3E-20	(Cerebral dopamine neurotrophic factor, CDNF.4962.52.1)	0.63	[0.49-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
698	chr10	14885597	14885598	rs41284449	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p13	NR	rs41284449-T	0.01916	9E-9	(GLUL)	0.1971	NR unit increase	Illumina [1671387] (imputed)	N
698	chr10	14911639	14911640	rs72772427	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p13	CDNF	rs72772427-C	0.88375	1E-9	(CDNF, 4962_52_1)	0.22426404	[0.15-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
698	chr10	14926524	14926525	rs59974558	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDNF	5,364 Icelandic ancestry individuals	NA	10p13		rs59974558-T	0.1255	6E-17		0.226522	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
699	chr10	14945405	14945406	rs11594111	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p13	intergenic	rs11594111-G	0.14	1E-7		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
699	chr10	14951704	14951705	rs7921238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10p13		rs7921238-C	NR	9E-10		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
699	chr10	14951704	14951705	rs7921238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p13	DCLRE1C	rs7921238-C	0.282623	1E-11		0.016597634	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
699	chr10	14951704	14951705	rs7921238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs7921238-C	0.332561	9E-11				Affymetrix, Illumina [23472807] (imputed)	N
699	chr10	14958757	14958758	rs35001362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p13	NR	rs35001362-A	0.23581	2E-11		0.015094	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
699	chr10	14976413	14976414	rs7076862	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	10p13	ACBD7, C10orf111, CDNF, DCLRE1C, FAM107B, HSPA14, MEIG1, NMT2, OLAH, PPIAP30, RPP38, SUV39H2	rs7076862-A	0.36	4E-6		0.44	[0.26-0.62] unit increase	Illumina [at least 4710000] (imputed)	N
699	chr10	15060275	15060276	rs10906798	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p13	MEIG1	rs10906798-?	NR	6E-6	(DAG 34:1)	0.1869703	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
699	chr10	15071384	15071385	rs10906806	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	10p13	NR	rs10906806-?	NR	1E-6		0.9229462	[0.89-0.95]	Affymetrix, Illumina [~ 10400000] (imputed)	N
700	chr10	15085072	15085073	rs12573070	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	10p13	OLAH	rs12573070-A		2E-6		0.082	[0.048-0.116] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
700	chr10	15090413	15090414	rs528249291	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	10p13	NR	rs528249291-?	NR	8E-6		0.80114	[0.45-1.15] unit increase	NR [13958389] (imputed)	N
700	chr10	15128968	15128969	rs10906824	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	10p13	ACBD7	rs10906824-A	0.033	4E-6		0.9719	[0.56-1.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
700	chr10	15129401	15129402	rs11259474	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	ACBD7	rs11259474-G	0.109	5E-6	(Free T3 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
700	chr10	15135777	15135778	rs74123277	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p13	NR	rs74123277-C	0.02787	3E-8	(ACLY)	0.1739	NR unit increase	Illumina [1671387] (imputed)	N
700	chr10	15148282	15148283	rs2006983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p13	NR	rs2006983-T	0.02091	3E-10	(ACLY)	0.2151	NR unit increase	Illumina [1671387] (imputed)	N
700	chr10	15157770	15157771	rs11259498	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	10p13	LOC105376431, NMT2	rs11259498-?	NR	1E-6	(hip neck BMD MTAG)	0.306	[NR] unit decrease	Affymetrix [NR]	N
701	chr10	15206802	15206803	rs4748146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p13		rs4748146-?	NR	2E-10				NR [~ 8900000] (imputed)	N
701	chr10	15211717	15211718	rs7094834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p13		rs7094834-C	NR	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
701	chr10	15213099	15213100	rs17156371	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	10p13	RPP38, NMT2, PPIAP30, FAM171A1	rs17156371-A	0.1115	5E-6		2.1463	[1.82-2.47]	Illumina [8809853] (imputed)	N
701	chr10	15222969	15222970	rs4265502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10p13	RP11-455B2.9	rs4265502-T	NR	4E-8		0.0165731	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
701	chr10	15225053	15225054	rs10906850	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	10p13	NMT2	rs10906850-C	0.225	4E-8		1.18	[1.11-1.25]	Illumina [1438399] (imputed)	N
701	chr10	15307096	15307097	rs112845472	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	10p13	FAM171A1	rs112845472-A	0.0256278	7E-6		2.01414	[1.48369-2.73423]	NR [7263501] (imputed)	N
701	chr10	15317636	15317637	rs12257961	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10p13	FAM171A1	rs12257961-A		5E-6		1.2195122	[NR]	Illumina [up to 9464381] (imputed)	N
701	chr10	15320659	15320660	rs11259593	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	10p13	FAM171A1	rs11259593-A	0.01042	5E-6		0.181618	NR unit increase	Illumina [560351]	N
702	chr10	15339389	15339390	rs138075843	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	10p13		rs138075843-T	NR	4E-6		0.026	[0.014-0.038] unit decrease	NR [7831927]	N
702	chr10	15413759	15413760	rs45607632	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	10p13	intergenic	rs45607632-C	0.0275395	5E-6		2.0079	[1.48801-2.70945]	NR [7263501] (imputed)	N
702	chr10	15445487	15445488	rs11259645	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10p13	NR	rs11259645-?	NR	8E-6		0.0078181	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
703	chr10	15538382	15538383	rs7098187	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	10p13	Intergenic	rs7098187-T	0.009	3E-6		2.62	[1.75-3.94]	Illumina [580483] (imputed)	N
703	chr10	15557405	15557406	rs896435	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	10p13	ITGA8	rs896435-T	0.6892	3E-13		0.0735	[0.054-0.093] unit increase	NR [7784415] (imputed)	N
703	chr10	15561542	15561543	rs7077361	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	10p13	ITGA8	rs7077361-T	0.89	5E-6		1.19	[NR]	Illumina [463185]	N
703	chr10	15569597	15569598	rs10906923	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	10p13	ITGA8	rs10906923-A		3E-7		0.0768	[0.047-0.106] unit increase	Illumina [NR]	N
703	chr10	15569597	15569598	rs10906923	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	10p13	FAM171A1	rs10906923-A	0.694	1E-8		1.0752687	[1.04-1.1]	Illumina [11933700] (imputed)	N
704	chr10	15600670	15600671	rs28643277	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	10p13	ITGA8	rs28643277-A	0.35	9E-6	(Age 20-60 years)	1.32	[1.17-1.50]	Affymetrix, Illumina [up to 17585496] (imputed)	N
704	chr10	15654886	15654887	rs4748185	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p13	ITGA8, FAM171A1, C10orf97	rs4748185-A	0.001	1E-6		33.99	[3.51-328.89]	Illumina [1556551]	N
704	chr10	15701211	15701211	rs9333127	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (social interaction)	2,509 individuals	NA	10p13	ITGA8	rs9333127-?	NR	3E-6		0.414	NR unit increase	Illumina [6900500] (imputed)	N
704	chr10	15719620	15719621	rs7895372	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p13	ITGA8	rs7895372-G	0.04	6E-6	(TC)	0.35	[NR] mg/dL decrease	Affymetrix [408775]	N
705	chr10	15760248	15760249	rs9333075	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p13	NR	rs9333075-?	NR	5E-9				Illumina [at least 7383741] (imputed)	N
705	chr10	15771903	15771904	rs117273305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p13		rs117273305-?	NR	1E-17				NR [~ 8900000] (imputed)	N
705	chr10	15810353	15810354	rs11253637	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	10p13	ITGA8	rs11253637-?		2E-8				Illumina [563980]	N
705	chr10	15844399	15844400	rs12221218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p13	FAM188A	rs12221218-C	0.215805	2E-11		0.01830313	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
706	chr10	15872826	15872827	rs7896076	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	10p13	ITGA8	rs7896076-?		2E-8				Illumina [563980]	N
706	chr10	15873287	15873288	rs12265790	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	10p13	ITGA8	rs12265790-?		2E-8				Illumina [563980]	N
706	chr10	15904704	15904705	rs191803551	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10p13	FAM188A	rs191803551-A	0.0263	5E-6		0.1138	[0.065-0.163] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
706	chr10	15904704	15904705	rs191803551	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10p13	FAM188A	rs191803551-A	0.0263	5E-6		0.1138	[0.065-0.163] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
706	chr10	15918353	15918354	rs200867798	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	10p13	NR	rs200867798-?	NR	4E-6		0.9652	[0.6-1.33] unit decrease	Illumina [at least 560000] (imputed)	N
706	chr10	15925965	15925966	rs11253668	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	10p13	NR	rs11253668-G	NR	9E-6		0.0797	[0.044-0.115] SD units decrease	NR [10700000] (imputed)	N
706	chr10	15977877	15977878	rs11253696	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	10p13		rs11253696-A	NR	6E-6		0.4223	[0.24-0.6] unit decrease	NR [534934]	N
707	chr10	15997994	15997995	rs76988223	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p13	NR	rs76988223-C	0.02439	1E-8	(PRTN3)	0.04404	NR unit increase	Illumina [1671387] (imputed)	N
707	chr10	16116746	16116747	rs2069036	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	10p13	FAM188A, PTER	rs2069036-C	0.75	3E-6	(Men)	0.015772996	[0.0091-0.0224] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
707	chr10	16116746	16116747	rs2069036	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	10p13	C10orf97	rs2069036-T	0.245	8E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
708	chr10	16218531	16218532	rs116781682	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	10p13	FAM188A	rs116781682-T	0.012	3E-7		0.118	[0.073-0.163] % decrease	Illumina [11510031] (imputed)	N
709	chr10	16299950	16299951	rs10508503	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	10p13	PTER	rs10508503-C	0.92	2E-7				Illumina [308846]	N
709	chr10	16311535	16311536	rs4747268	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	10p13	PTER	rs4747268-A	0.17	1E-7		0.539	[0.34-0.74] unit decrease	Illumina [6007542] (imputed)	N
710	chr10	16416280	16416281	rs565446000	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p13	snoU13	rs565446000-T	0.9985	8E-6		0.6885	[0.39-0.99] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
710	chr10	16430193	16430194	rs138166088	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	10p13	NR	rs138166088-C	0.009858	4E-6		0.6929	[0.4-0.99] unit increase	Illumina [10677593] (imputed)	N
710	chr10	16483234	16483235	rs17138613	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p13	NR	rs17138613-?	NR	1E-6				Affymetrix [NR]	N
710	chr10	16488452	16488453	rs11253995	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	N-acetyl-beta-alanine levels	291 European ancestry individuals	NA	10p13		rs11253995-T	0.4906	1E-31		0.0981	unit decrease	Illumina [7049691] (imputed)	N
710	chr10	16493137	16493138	rs6602116	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10p13	PTER	rs6602116-G	0.449041	1E-24	(N-acetyltaurine)	0.231	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
710	chr10	16493137	16493138	rs6602116	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10p13	PTER	rs6602116-G	0.449041	1E-24	(N-acetyltaurine)	0.231	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
711	chr10	16526839	16526840	rs2275731	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	10p13	PTER	rs2275731-A	0.37	4E-6		1.36	[1.21-1.53] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
711	chr10	16614400	16614401	rs76238752	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10p13	RSU1	rs76238752-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
711	chr10	16634298	16634299	rs7068341	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p13	intergenic	rs7068341-T	0.12	2E-6		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
712	chr10	16691398	16691399	rs45595836	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	10p13	Intergenic	rs45595836-T	0.067	3E-6		1.126	[NR]	Illumina [9112387] (imputed)	N
712	chr10	16713772	16713773	rs10904785	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10p13	RSU1	rs10904785-?	NR	8E-6		0.223	[0.12-0.32] unit increase	Illumina [at least 13000000] (imputed)	N
712	chr10	16734348	16734349	rs11254147	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	10p13	RSU1	rs11254147-G	0.25	6E-7	(right arm)	0.29	[0.17-0.41] g increase	Illumina [> 1100000]	N
712	chr10	16744522	16744523	rs11254160	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	RSU1	rs11254160-A	0.138	8E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
712	chr10	16744522	16744523	rs11254160	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	RSU1	rs11254160-A	0.138	6E-6	(VO2max )	0.04	[NR] mL/min increase	Illumina [899892]	N
712	chr10	16748609	16748610	rs7916663	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	RSU1	rs7916663-A	0.184	5E-6	(Height z-score )	0.03	[NR] SD increase	Illumina [899892]	N
712	chr10	16748609	16748610	rs7916663	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	RSU1	rs7916663-A	0.184	4E-7	(Height )	0.04	[NR] cm increase	Illumina [899892]	N
712	chr10	16748609	16748610	rs7916663	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p13	RSU1	rs7916663-A	0.184	2E-6	(Bone mineral content )	0.04	[NR] kg increase	Illumina [899892]	N
712	chr10	16750128	16750129	rs7893571	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10p13	RSU1	rs7893571-G	0.334299	3E-12		0.0101768	[0.0073-0.013] unit decrease	Affymetrix [12370749]	N
712	chr10	16750128	16750129	rs7893571	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	10p13	NR	rs7893571-G	0.3358	1E-11		0.01785482	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
712	chr10	16750128	16750129	rs7893571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p13		rs7893571-?	NR	8E-12				NR [~ 8900000] (imputed)	N
712	chr10	16750128	16750129	rs7893571	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p13	NA	rs7893571-T	0.6736	6E-12		0.0125	[0.009-0.016] unit increase	NR [~ 27400000] (imputed)	N
712	chr10	16753719	16753720	rs61842316	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	10p13	RSU1	rs61842316-T	NR	3E-6	(females)	0.27	[0.15-0.39] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
712	chr10	16759311	16759312	rs10795422	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p13	NR	rs10795422-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
712	chr10	16766460	16766461	rs7085659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p13		rs7085659-T	NR	2E-11		0.0136	[0.0097-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
712	chr10	16774123	16774123	rs10630240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p13		rs10630240-CAGG	NR	6E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
713	chr10	16794090	16794091	rs6602152	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p13	RSU1	rs6602152-G	NR	5E-6				Illumina [up to 11995908] (imputed)	N
713	chr10	16794090	16794091	rs6602152	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p13	RSU1	rs6602152-G	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
713	chr10	16817528	16817529	rs557338857	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p13	CUBN	rs557338857-T	0.994	4E-17		0.121987	[0.094-0.15] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
713	chr10	16848123	16848124	rs11254204	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p13	CUBN	rs11254204-?	NR	8E-6	(TAG 50:1)	2.4632018	[1.38-3.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
713	chr10	16857132	16857133	rs812426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p13	RSU1	rs812426-G	0.485736	8E-54		0.035021916	[0.031-0.039] unit increase	Affymetrix [93095623] (imputed)	N
713	chr10	16857132	16857133	rs812426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p13	NR	rs812426-G	0.554424	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
713	chr10	16858586	16858587	rs7904368	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Ratio of the peak velocity of the mitral E-Wave divided by the peak velocity of the mitral A-wave.	21,852 European ancestry individuals	14,787 European ancestry individuals	10p13	RSU1	rs7904368-T	0.79	9E-6		0.012	[0.0061-0.0179] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
713	chr10	16864326	16864327	rs780634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p13	RSU1	rs780634-G	0.485486	8E-10		0.013897149	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr10	16864326	16864327	rs780634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p13	NR	rs780634-G	0.484735	9E-15		0.014271	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
713	chr10	16872796	16872797	rs2603807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p13	CUBN	rs2603807-G	0.483308	3E-16		0.018540313	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr10	16874564	16874565	rs1797081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10p13	CUBN	rs1797081-C	0.4908	6E-17		0.03044427	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr10	16897082	16897083	rs576011643	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10p13	NR	rs576011643-?	NR	6E-6		0.506799	[0.29-0.73] unit decrease	NR [13958389] (imputed)	N
714	chr10	16918996	16918997	rs1801240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	10p13	NR	rs1801240-C	NR	2E-19		0.0598	[0.047-0.073] unit increase	Affymetrix [9000000] (imputed)	N
714	chr10	16919051	16919052	rs1801239	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	10p13	NR	rs1801239-C	0.1038	4E-27		0.2418	[0.2-0.29] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16919051	16919052	rs1801239	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	10p13	CUBN, RSU1	rs1801239-T	0.9	4E-6		0.054	[0.03-0.078] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
714	chr10	16919051	16919052	rs1801239	21355061	Boger CA	2011-02-25	J Am Soc Nephrol	CUBN is a gene locus for albuminuria.	Urinary albumin excretion	31,580 European ancestry individuals	31,277 European ancestry individuals	10p13	RSU1, CUBN	rs1801239-T	0.90	1E-11	(UACR)	0.0835	[NR] unit decrease CKDGen	Affymetrix, Illumina [~ 2500000] (imputed)	N
714	chr10	16920891	16920892	rs74440730	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10p13	CUBN	rs74440730-A	0.8938	6E-11		0.0387	[0.027-0.05] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
714	chr10	16920891	16920892	rs74440730	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10p13	CUBN	rs74440730-A	0.8924	2E-9		0.03682	[0.025-0.049] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
714	chr10	16920891	16920892	rs74440730	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10p13	NR	rs74440730-A	0.1107	1E-6	(men)	0.0492	[0.029-0.069] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
714	chr10	16930737	16930738	rs141493439	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p13	CUBN	rs141493439-A	0.0117	7E-113		0.219422	[0.2-0.24] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
714	chr10	16932195	16932196	rs17343073	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10p13	NR	rs17343073-A	0.9	4E-9		0.0177	[0.012-0.024] unit decrease	NR [NR]	N
714	chr10	16932383	16932384	rs45551835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10p13		rs45551835-A	NR	5E-13		0.0614	[0.045-0.078] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
714	chr10	16932383	16932384	rs45551835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	10p13	NR	rs45551835-A	NR	9E-28		0.1686	[0.14-0.2] unit increase	Affymetrix [9000000] (imputed)	N
714	chr10	16932383	16932384	rs45551835	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10p13	NR	rs45551835-A	NR	1E-12		0.0715	[0.052-0.091] unit increase	Affymetrix [9000000] (imputed)	N
714	chr10	16932383	16932384	rs45551835	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10p13	CUBN	rs45551835-A	0.014	7E-114	(EA)	0.193	[0.18-0.21] unit increase	NR [12082474] (imputed)	N
714	chr10	16932383	16932384	rs45551835	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	10p13	CUBN	rs45551835-A	NR	3E-126		0.2008	[0.18-0.22] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
714	chr10	16932383	16932384	rs45551835	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p13	CUBN	rs45551835-A	0.0147	5E-126		0.201076	[0.18-0.22] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
714	chr10	16932383	16932384	rs45551835	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	10p13	CUBN	rs45551835-A	NR	2E-85		1.7643812	[1.71-1.82]	Affymetrix, Illumina [8326000] (imputed)	N
714	chr10	16932383	16932384	rs45551835	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	10p13	CUBN	rs45551835-A	0.0144	4E-62		0.198	[0.17-0.22] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16932383	16932384	rs45551835	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	10p13	NR	rs45551835-A	0.0145	8E-44		0.6575	[0.56-0.75] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16932383	16932384	rs45551835	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	10p13	CUBN	rs45551835-A	0.014	1E-51		0.11178	[0.097-0.126] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16932383	16932384	rs45551835	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10p13	CUBN	rs45551835-A	0.014	2E-92		0.14237	[0.13-0.16] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16940845	16940846	rs45619139	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10p13	CUBN	rs45619139-G	0.101	5E-30	(EA)	0.04	[0.032-0.048] unit increase	NR [12082474] (imputed)	N
714	chr10	16940845	16940846	rs45619139	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	10p13	CUBN	rs45619139-G	0.1016	1E-40		0.063	[0.053-0.073] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16947663	16947664	rs74375025	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	10p13	CUBN	rs74375025-A	0.1071	1E-24		0.1064	[0.086-0.127] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
714	chr10	16947663	16947664	rs74375025	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p13	CUBN	rs74375025-A	0.1056	4E-79		0.0610158	[0.055-0.067] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
714	chr10	16947663	16947664	rs74375025	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria (moderate to severe)	25,317 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10p13	CUBN	rs74375025-A	0.1185	5E-14		1.152	[1.11-1.19]	Illumina [32500000] (imputed)	N
714	chr10	16947663	16947664	rs74375025	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria (mild)	28,692 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10p13	CUBN	rs74375025-A	0.11852	1E-7		1.099	[1.06-1.14]	Illumina [32500000] (imputed)	N
714	chr10	16947663	16947664	rs74375025	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria	54,009 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10p13	CUBN	rs74375025-A	0.1185	3E-15		1.123	[1.09-1.15]	Illumina [32500000] (imputed)	N
714	chr10	16966414	16966415	rs144250387	27650483	Kramer HJ	2016-09-20	J Am Soc Nephrol	African Ancestry-Specific Alleles and Kidney Disease Risk in Hispanics/Latinos.	Urinary albumin-to-creatinine ratio	5,458 Caribbean Hispanic/Latino individuals, 6,734 Mainland Hispanic/Latino individuals, 34 Hispanic/Latino individuals	NA	10p13	CUBN	rs144250387-?	NR	2E-8		0.11	[0.061-0.139] unit decrease	Illumina [2536661] (imputed)	N
714	chr10	16967416	16967417	rs144360241	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	10p13	CUBN	rs144360241-C	0.005	4E-9		0.0769	[0.051-0.102] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16967416	16967417	rs144360241	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10p13	CUBN	rs144360241-C	0.005	3E-11		0.08186	[0.058-0.106] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16969922	16969923	rs10795433	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	10p13	CUBN	rs10795433-A	0.86	2E-10		0.061	[0.041-0.081] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
714	chr10	16969922	16969923	rs10795433	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	10p13	CUBN	rs10795433-A	0.85	1E-10		0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
714	chr10	16971425	16971426	rs1276720	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10p13	CUBN	rs1276720-T	0.745	9E-9		0.01109	[0.0073-0.0149] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16973721	16973722	rs7914868	34016946	Wu LS	2021-05-20	Transl Psychiatry	Genome-wide association study of early-onset bipolar I disorder in the Han Taiwanese population.	Bipolar disorder (early vs late onset)	516 Han Taiwanese ancestry cases, 790 Han Taiwanese ancestry controls	153 Han Taiwanese ancestry cases, 320 Han Taiwanese ancestry controls	10p13	CUBN	rs7914868-?	NR	7E-7		2.1	[1.59-2.76] unit increase	Illumina [4750978] (imputed)	N
714	chr10	16992010	16992011	rs141640975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10p13		rs141640975-A	NR	8E-9		0.1107	[0.073-0.148] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
714	chr10	16992010	16992011	rs141640975	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	10p13		rs141640975-?	NR	6E-12		0.142325	[0.1-0.18] unit decrease	NR [9800000] (imputed)	N
714	chr10	16992010	16992011	rs141640975	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	10p13	NR	rs141640975-A	NR	3E-26		0.3558	[0.29-0.42] unit increase	Affymetrix [9000000] (imputed)	N
714	chr10	16992010	16992011	rs141640975	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10p13	CUBN	rs141640975-A	0.003	5E-113	(EA)	0.452	[0.41-0.49] unit increase	NR [12082474] (imputed)	N
714	chr10	16992010	16992011	rs141640975	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	10p13	CUBN	rs141640975-A	0.0026	1E-51		0.424	[0.37-0.48] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16992010	16992011	rs141640975	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	10p13	NR	rs141640975-A	0.0026	3E-44		1.2372	[-0.50132-2.97572] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	16992010	16992011	rs141640975	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	10p13	CUBN	rs141640975-A	0.003	3E-84		0.33405	[0.3-0.37] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16992010	16992011	rs141640975	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10p13	CUBN	rs141640975-A	0.003	2E-107		0.35876	[0.33-0.39] unit increase	Affymetrix [11709857] (imputed)	N
714	chr10	16997265	16997266	rs10904849	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	10p13	CUBN	rs10904849-?	0.68	7E-8		1.13	[1.08-1.19]	Affymetrix, Illumina [~ 10000000] (imputed)	N
714	chr10	16997890	16997891	rs10508517	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p13	CUBN	rs10508517-A	0.43	6E-6	(DBP)	0.18	[NR] mm Hg decrease	Affymetrix [408775]	N
714	chr10	16998339	16998340	rs4748329	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	10p13	NR	rs4748329-C	NR	8E-6	(EA)	1.87	[1.42-2.459]	Illumina [5784964] (imputed)	N
714	chr10	17001337	17001338	rs12221306	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p13	RSU1	rs12221306-?	NR	5E-6	(trimethylamine N oxide)	0.15756065	[0.09-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
714	chr10	17005742	17005743	rs539606836	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	10p13	NR	rs539606836-A	3.0E-4	1E-13		1.9401	[1.43-2.45] unit increase	Affymetrix [19420026] (imputed)	N
714	chr10	17011715	17011716	rs78858833	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p13	CUBN	rs78858833-?		8E-6				Illumina [4322238] (imputed)	N
714	chr10	17019558	17019559	rs61841503	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Romboutsia id.11347)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	10p13		rs61841503-G	NR	4E-8		5.4910297	z score increase	Affymetrix, Illumina [NR] (imputed)	N
714	chr10	17019558	17019559	rs61841503	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Peptostreptococcaceae id.2042)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	10p13		rs61841503-G	NR	1E-8		5.7341337	z score increase	Affymetrix, Illumina [NR] (imputed)	N
714	chr10	17032280	17032281	rs2291521	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p13	CUBN	rs2291521-?		3E-6				Illumina [4322238] (imputed)	N
714	chr10	17033503	17033504	rs116867125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	10p13	NR	rs116867125-A	NR	4E-10		0.0961	[0.066-0.126] unit increase	Affymetrix [9000000] (imputed)	N
715	chr10	17042602	17042603	rs80008789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p13	NR	rs80008789-G	NR	4E-9		0.0562	[0.037-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
715	chr10	17051623	17051624	rs34643831	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	10p13	CUBN	rs34643831-?		1E-6				Illumina [7405822] (imputed)	N
715	chr10	17130692	17130693	rs11254363	19303062	Tanaka T	2009-03-18	Am J Hum Genet	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	10p13	CUBN	rs11254363-A	0.70	1E-6	(vitamin B12)	21.49	[7.71-35.27] pg/mL decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
715	chr10	17131752	17131753	rs7904579	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour in bipolar disorder	398 European ancestry bipolar disorder cases, 1,231 European ancestry bipolar disorder controls	NA	10p13	CUBN	rs7904579-G	0.37	1E-7		1.56	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
715	chr10	17142525	17142526	rs6602175	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	10p13	CUBN	rs6602175-?	NR	3E-6		0.007	[NR] unit decrease	Illumina [478011]	N
715	chr10	17156150	17156151	rs1801222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p13		rs1801222-?	NR	2E-13				NR [~ 8900000] (imputed)	N
715	chr10	17156150	17156151	rs1801222	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	10p13	CUBN	rs1801222-A	0.316	2E-13	(Vitamin B12)	0.218	[NR] unit decrease	Illumina [737081]	N
715	chr10	17156150	17156151	rs1801222	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	10p13	CUBN	rs1801222-A	0.34	8E-10		0.0453	[0.032-0.059] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
715	chr10	17156150	17156151	rs1801222	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	10p13	CUBN	rs1801222-?	0.28	3E-9	(Plasma Vitamin B12)	0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
715	chr10	17160004	17160005	rs562661763	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p13	CUBN	rs562661763-T	0.9929	9E-20		0.120843	[0.095-0.147] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
716	chr10	17184051	17184051	rs34782095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p13		rs34782095-AT	NR	4E-11		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
716	chr10	17184051	17184051	rs34782095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10p13		rs34782095-AT	NR	1E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
716	chr10	17188449	17188450	rs45507399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p13	NR	rs45507399-T	NR	1E-10		0.0485	[0.034-0.063] unit increase	Affymetrix [9000000] (imputed)	N
716	chr10	17188640	17188641	rs10904887	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	10p13	TRDMT1	rs10904887-T	0.474	4E-6			[NR]	Illumina [9250000] (imputed)	N
716	chr10	17191691	17191692	rs11254406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p13	TRDMT1	rs11254406-G	0.465206	7E-11		0.014798578	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr10	17193345	17193346	rs3780962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10p13		rs3780962-?	NR	1E-11				NR [~ 8900000] (imputed)	N
716	chr10	17195427	17195428	rs2273736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p13	TRDMT1	rs2273736-C	0.531832	2E-9		0.013548051	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
716	chr10	17204247	17204248	rs200006483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p13	TRDMT1	rs200006483-T	0.45867	8E-17		0.020091176	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr10	17223243	17223244	rs12780845	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	10p13	CUBN	rs12780845-A	0.65	8E-10		0.0529	[0.035-0.071] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
716	chr10	17241009	17241010	rs147380957	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10p13	Intergenic	rs147380957-?		7E-6		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
716	chr10	17241009	17241010	rs147380957	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10p13	Intergenic	rs147380957-?		4E-6		1.86	[1.43-2.42]	Illumina [7645193] (imputed)	N
716	chr10	17255094	17255095	rs10795464	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10p13	NR	rs10795464-G	0.578732	3E-13		0.0144189	[0.011-0.018] unit decrease	Affymetrix [15000001]	N
716	chr10	17260289	17260290	rs10904908	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	10p13	VIM, CUBN	rs10904908-A	0.546	5E-11	(Trans-ethnic initial)	0.025	[0.018-0.032] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
716	chr10	17260289	17260290	rs10904908	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10p13	VIM, CUBN	rs10904908-G	0.43	3E-11		0.025	[NR] unit increase	NR [NR] (imputed)	N
716	chr10	17261761	17261762	rs12413013	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10p13	TRDMT1, VIM	rs12413013-G	0.69	3E-21		9.45	z-score increase	Affymetrix [4314223] (imputed)	N
716	chr10	17265446	17265447	rs11254464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10p13		rs11254464-C	NR	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
716	chr10	17265446	17265447	rs11254464	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10p13	VIM	rs11254464-T	0.576895	6E-11		0.0126591	[0.0089-0.0164] unit decrease	Affymetrix [NR] (imputed)	N
716	chr10	17268838	17268839	rs3758413	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10p13	VIM	rs3758413-T	0.582276	2E-8		0.0113883	[0.0074-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
716	chr10	17268838	17268839	rs3758413	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10p13	intergenic	rs3758413-T	0.6103	2E-16		0.0222	[0.017-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
716	chr10	17268838	17268839	rs3758413	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10p13	intergenic	rs3758413-T	0.6103	8E-11		0.0176	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
716	chr10	17273337	17273338	rs35359588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p13	VIM	rs35359588-A	0.267824	8E-14		0.018959323	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr10	17300227	17300228	rs165527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10p13		rs165527-G	NR	1E-11		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
717	chr10	17321834	17321835	rs6602187	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p13	NR	rs6602187-A	NR	1E-23		0.0252	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr10	17333065	17333065	rs5783545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10p13		rs5783545-GA	0.58188	2E-9		0.013642482	[0.0092-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr10	17340341	17340342	rs11254509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p13	NR	rs11254509-A	NR	4E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr10	17340341	17340342	rs11254509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p13	NR	rs11254509-A	NR	3E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr10	17341174	17341175	rs61841834	33407712	Liang X	2021-01-06	Mol Brain	Evaluating the genetic effects of sex hormone traits on the development of mental traits: a polygenic score analysis and gene-environment-wide interaction study in UK Biobank cohort.	Testosterone levels x smoking behaviour (cigarettes smoked per day) interaction	414,294 British ancestry individuals	NA	10p13	NR	rs61841834-?	NR	3E-7				Affymetrix [NR] (imputed)	N
717	chr10	17341513	17341514	rs61841835	33407712	Liang X	2021-01-06	Mol Brain	Evaluating the genetic effects of sex hormone traits on the development of mental traits: a polygenic score analysis and gene-environment-wide interaction study in UK Biobank cohort.	Testosterone levels x smoking behaviour (cigarettes smoked per day) interaction	414,294 British ancestry individuals	NA	10p13	NR	rs61841835-?	NR	3E-7				Affymetrix [NR] (imputed)	N
717	chr10	17352424	17352425	rs112823114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs112823114-A	NR	7E-13		0.0556	[0.041-0.071] unit increase	Affymetrix [9000000] (imputed)	N
717	chr10	17388142	17388143	rs359312	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	10p12.33	ST8SIA6	rs359312-T	0.051	9E-6		0.076	[0.043-0.109] unit increase	Illumina [at least 81396]	N
717	chr10	17388142	17388143	rs359312	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	10p12.33	ST8SIA6	rs359312-T	NR	9E-8		3.91	[1.52-10.10]	Affymetrix [476796]	N
717	chr10	17392400	17392401	rs77975607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs77975607-A	NR	8E-13		0.0639	[0.046-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
718	chr10	17433919	17433920	rs12415421	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	10p12.33	NR	rs12415421-T	0.046	3E-8		0.2782	[0.18-0.37] unit increase	Illumina [up to 730525]	N
718	chr10	17436777	17436778	rs147215801	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	10p12.33	ST8SIA6	rs147215801-T	NR	3E-11		0.0576	[0.041-0.074] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
718	chr10	17436777	17436778	rs147215801	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	10p12.33	ST8SIA6	rs147215801-T	NR	1E-9		1.1990145	[1.14-1.26]	Affymetrix, Illumina [8326000] (imputed)	N
718	chr10	17457837	17457838	rs35512633	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p12.33	ST8SIA6	rs35512633-C	0.91515625	3E-7	(ST8SIA6, 6930_95_3)	0.21668449	[0.13-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
718	chr10	17494977	17494978	rs72778956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs72778956-A	NR	1E-22		0.0907	[0.072-0.109] unit increase	Affymetrix [9000000] (imputed)	N
718	chr10	17525960	17525961	rs117440785	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	10p12.33	ST8SIA6, ST8SIA6-AS1	rs117440785-?	NR	9E-6				Illumina [9650000] (imputed)	N
719	chr10	17565424	17565425	rs4335445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs4335445-A	NR	8E-11		0.0319	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
719	chr10	17589342	17589343	rs77826976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs77826976-C	NR	3E-14		0.0582	[0.043-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17594284	17594285	rs11254661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs11254661-G	NR	1E-9		0.027	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17596120	17596121	rs6602203	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	10p12.33	intergenic	rs6602203-?		5E-6	(MCRI)	0.32	[0.18-0.46] unit decrease	Illumina [693128]	N
719	chr10	17602701	17602702	rs12259191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs12259191-C	NR	6E-27		0.0318	[0.026-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17602701	17602702	rs12259191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs12259191-C	NR	5E-43		0.0406	[0.035-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17603700	17603701	rs72780728	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	10p12.33	NR	rs72780728-G		3E-6		0.1883	[0.11-0.27] SD units decrease	NR [10700000] (imputed)	N
719	chr10	17632561	17632562	rs2357285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs2357285-T	NR	3E-18		0.0434	[0.034-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17632561	17632562	rs2357285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs2357285-T	NR	3E-50		0.0742	[0.064-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17682089	17682090	rs61842261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs61842261-G	NR	5E-36		0.0355	[0.03-0.041] unit increase	Affymetrix [9000000] (imputed)	N
719	chr10	17682089	17682090	rs61842261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs61842261-G	NR	6E-70		0.05	[0.045-0.055] unit increase	Affymetrix [9000000] (imputed)	N
719	chr10	17682324	17682325	rs17141436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs17141436-T	NR	4E-9		0.0542	[0.036-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr10	17685691	17685692	rs45489291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs45489291-A	NR	6E-17		0.0648	[0.05-0.08] unit increase	Affymetrix [9000000] (imputed)	N
719	chr10	17685691	17685692	rs45489291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs45489291-A	NR	6E-37		0.0982	[0.083-0.113] unit increase	Affymetrix [9000000] (imputed)	N
720	chr10	17706112	17706113	rs7092926	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10p12.33	PTPLA, TMEM236	rs7092926-T	0.432	7E-7	(conditional)	0.0258662	NR unit increase	NR [NR]	N
720	chr10	17717577	17717578	rs72782503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs72782503-A	NR	2E-17		0.0638	[0.049-0.078] unit increase	Affymetrix [9000000] (imputed)	N
720	chr10	17735718	17735719	rs144430312	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10p12.33	NR	rs144430312-?	NR	5E-7		0.06815	[0.042-0.095] unit increase novel	Illumina [6108953] (imputed)	N
720	chr10	17748171	17748172	rs2688786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs2688786-A	NR	1E-43		0.0386	[0.033-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17748171	17748172	rs2688786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs2688786-A	NR	2E-70		0.0494	[0.044-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17759699	17759700	rs45600541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs45600541-C	NR	4E-16		0.0396	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17766710	17766711	rs10508544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs10508544-T	NR	3E-13		0.0421	[0.031-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17766710	17766711	rs10508544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs10508544-T	NR	3E-20		0.053	[0.042-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17767649	17767650	rs117754255	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs117754255-T	NR	1E-17		0.0755	[0.058-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr10	17772121	17772122	rs17465850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs17465850-G	NR	3E-10		0.0304	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
720	chr10	17776949	17776950	rs75905671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs75905671-A	NR	3E-10		0.0364	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr10	17856443	17856444	rs118160793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p12.33	NR	rs118160793-G	NR	9E-10		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
721	chr10	17856443	17856444	rs118160793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs118160793-G	NR	6E-113		0.0716	[0.065-0.078] unit increase	Affymetrix [9000000] (imputed)	N
721	chr10	17856443	17856444	rs118160793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs118160793-G	NR	1E-225		0.1015	[0.095-0.108] unit increase	Affymetrix [9000000] (imputed)	N
721	chr10	17875815	17875816	rs2477664	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	10p12.33	FAM23A, MRC1L1, FAM23B, MRC1	rs2477664-T	0.44	1E-16	(AST)	0.099	[0.075-0.123] unit decrease	Illumina [561583]	N
721	chr10	17875856	17875857	rs56278466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10p12.33		rs56278466-G	NR	4E-786		0.1443	[0.14-0.15] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
721	chr10	17875856	17875857	rs56278466	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	10p12.33	NR	rs56278466-?	NR	5E-21	(Asian)	0.12660414	[0.1-0.15] unit increase	Affymetrix [21347608] (imputed)	N
721	chr10	17875856	17875857	rs56278466	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	10p12.33		rs56278466-?	0.3373	5E-40		0.01551	unit decrease	NR [6200000] (imputed)	N
721	chr10	17875856	17875857	rs56278466	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	10p12.33		rs56278466-?	0.3373	6E-49		0.01574	unit decrease	NR [6200000] (imputed)	N
721	chr10	17875856	17875857	rs56278466	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	10p12.33		rs56278466-?	0.3373	3E-27		0.01564	unit decrease	NR [6200000] (imputed)	N
721	chr10	17875856	17875857	rs56278466	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.33	MRC1	rs56278466-G	0.628	5E-13	(Plexin-B2, PLXNB2.9216.100.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
721	chr10	17875856	17875857	rs56278466	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.33	MRC1	rs56278466-G	0.628	4E-13	(Semaphorin-6A, SEMA6A.7945.10.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
721	chr10	17880423	17880424	rs149410244	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.33	NR	rs149410244-A	0.247	1E-85	(Macrophage mannose receptor 1, MRC1.2637.77.2)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
721	chr10	17891605	17891606	rs138163581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA		NR	rs138163581-G	NR	3E-11		0.1294	[0.091-0.167] unit increase	Affymetrix [9000000] (imputed)	N
721	chr10	17891605	17891606	rs138163581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA		NR	rs138163581-G	NR	1E-26		0.2074	[0.17-0.25] unit increase	Affymetrix [9000000] (imputed)	N
721	chr10	17891704	17891705	rs1926736	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA			rs1926736-?	NR	8E-10		0.00574541	[0.0039-0.0076] unit decrease	NR [NR]	N
721	chr10	17891704	17891705	rs1926736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA			rs1926736-G	NR	2E-28		0.0286	[0.024-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
721	chr10	17891704	17891705	rs1926736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA			rs1926736-G	NR	2E-27		0.0274	[0.022-0.032] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
721	chr10	17891704	17891705	rs1926736	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		MRC1	rs1926736-G	0.622	2E-12	(Neurofascin, NFASC.7179.69.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
721	chr10	17891821	17891822	rs2437258	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA		MRC1	rs2437258-T	0.23	3E-10	(AST)	0.102	[0.071-0.133] units/l increase	Illumina [NR] (imputed)	N
721	chr10	17893208	17893209	rs691461	25057126	Ramos YF	2014-07-23	J Med Genet	Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance.	Osteoarthritis biomarkers	up to 4,654 European ancestry individuals	964 European ancestry individuals		MRC1	rs691461-G	0.502	2E-12	(sCOMP)	0.16	[NR] unit decrease	Illumina [up to 1961964] (imputed)	N
721	chr10	17932755	17932756	rs192899375	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA			rs192899375-?	NR	3E-11		0.0205147	[0.014-0.027] unit increase	Affymetrix [20259828] (imputed)	N
722	chr10	17966560	17966561	rs10508552	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA		MRC1	rs10508552-C	0.65	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
722	chr10	18087629	18087629	rs781940029	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA		NR	rs781940029-?	NR	6E-11	(Asian)	0.121548355	[0.085-0.158] unit increase	Affymetrix [21347608] (imputed)	N
723	chr10	18122660	18122661	rs150024976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA		NR	rs150024976-T	NR	7E-11		0.2516	[0.18-0.33] unit increase	Affymetrix [9000000] (imputed)	N
723	chr10	18122660	18122661	rs150024976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA		NR	rs150024976-T	NR	2E-17		0.3281	[0.25-0.4] unit increase	Affymetrix [9000000] (imputed)	N
723	chr10	18135612	18135613	rs4748424	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	10p12.33		rs4748424-G	0.21	3E-9		0.682	[0.601-0.774]	NR [38043082] (imputed)	N
723	chr10	18136542	18136543	rs12359178	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10p12.33		rs12359178-?	NR	7E-13		0.0093438	[0.0068-0.0119] unit decrease	NR [NR]	N
723	chr10	18154099	18154100	rs548129723	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.33	NR	rs548129723-A	0.167	5E-100	(Macrophage mannose receptor 1, MRC1.2637.77.2)	0.76	[0.68-0.84] unit increase	Affymetrix [10572788] (imputed)	N
724	chr10	18222341	18222342	rs10827785	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10p12.33	CRMP1	rs10827785-?		2E-11				NR [7428630] (imputed)	N
724	chr10	18222341	18222342	rs10827785	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10p12.33	MRC1, SLC39A12	rs10827785-?	NR	2E-19		0.04447	[0.035-0.054] unit increase novel	Illumina [6108953] (imputed)	N
724	chr10	18227443	18227444	rs483809	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p12.33	NR	rs483809-G	NR	9E-13		0.0223	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18227443	18227444	rs483809	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p12.33	NR	rs483809-G	NR	4E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18227443	18227444	rs483809	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs483809-G	NR	8E-77		0.0555	[0.05-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18227443	18227444	rs483809	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs483809-G	NR	6E-156		0.0796	[0.074-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18229830	18229831	rs12779357	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs12779357-C	NR	3E-21		0.0459	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18229830	18229831	rs12779357	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs12779357-C	NR	5E-27		0.0522	[0.043-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18246832	18246833	rs79372177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs79372177-G	NR	3E-22		0.0824	[0.066-0.099] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18246832	18246833	rs79372177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs79372177-G	NR	2E-41		0.1147	[0.098-0.131] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18248633	18248634	rs72784717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p12.33	SLC39A12	rs72784717-T	0.177222	3E-9		0.017401922	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr10	18263212	18263213	rs12243310	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p12.33	MRC1	rs12243310-C	0.86578125	1E-6	(MRC1, 2637_77_2)	0.17371073	[0.1-0.24] unit increase	Illumina [> 1000000] (imputed)	N
724	chr10	18263872	18263873	rs508196	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10p12.33	SLC39A12	rs508196-C	0.56	4E-159		26.9	z-score increase	Affymetrix [4314223] (imputed)	N
724	chr10	18263872	18263873	rs508196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p12.33	Intergenic	rs508196-T	0.411	4E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
724	chr10	18263872	18263873	rs508196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p12.33	Intergenic	rs508196-C	0.589	4E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
724	chr10	18266409	18266410	rs553304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p12.33		rs553304-?	NR	7E-10				NR [~ 8900000] (imputed)	N
724	chr10	18270421	18270422	rs1926739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p12.33	NR	rs1926739-A	0.486669	9E-13		0.013141	[0.0095-0.0167] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
724	chr10	18271656	18271656	rs11407350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p12.33	SLC39A12	rs11407350-AC	0.490492	3E-13		0.016100647	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
724	chr10	18271656	18271656	rs11407350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10p12.33	SLC39A12	rs11407350-AC	0.490535	1E-12		0.01576518	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
724	chr10	18271656	18271656	rs11407350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10p12.33	NR	rs11407350-I	0.490239	3E-12		0.014413	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
724	chr10	18271857	18271858	rs113334738	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	10p12.33	SLC39A12	rs113334738-?	NR	4E-9		0.03	[0.020-0.040] unit increase	Illumina [12039491] (imputed)	N
724	chr10	18271961	18271962	rs2497832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10p12.33		rs2497832-A	NR	4E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
724	chr10	18271961	18271962	rs2497832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10p12.33		rs2497832-A	NR	2E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
724	chr10	18271969	18271970	rs2497833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.33	NR	rs2497833-T	0.502341	7E-11				Affymetrix, Illumina [24649327] (imputed)	N
724	chr10	18271969	18271970	rs2497833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.33	NR	rs2497833-T	0.495688	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
724	chr10	18281175	18281176	rs58377250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs58377250-C	NR	8E-70		0.0602	[0.054-0.067] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18281175	18281176	rs58377250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs58377250-C	NR	5E-112		0.0766	[0.07-0.083] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18282426	18282427	rs2478571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p12.33	NR	rs2478571-A	NR	2E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18282426	18282427	rs2478571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs2478571-A	NR	7E-68		0.0455	[0.04-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18282426	18282427	rs2478571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs2478571-A	NR	1E-153		0.0689	[0.064-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18290557	18290558	rs9418383	30004843	Ge S	2018-07-01	OMICS	Type 2 Diabetes Mellitus: Integrative Analysis of Multiomics Data for Biomarker Discovery.	Elevated fasting plasma glucose	76 Chinese ancestry cases, 435 Chinese ancestry controls	NA	10p12.33	SLC39A12	rs9418383-C	0.07544	8E-7		2.393	[1.957-2.829]	Illumina [69485]	N
724	chr10	18291221	18291222	rs41277356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs41277356-G	NR	1E-33		0.0931	[0.078-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18291221	18291222	rs41277356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs41277356-G	NR	5E-56		0.1213	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr10	18299627	18299628	rs7906425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs7906425-A	NR	8E-12		0.0166	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18299627	18299628	rs7906425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs7906425-A	NR	2E-19		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
724	chr10	18331991	18331992	rs11012350	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p12.33	NR	rs11012350-?	NR	2E-6	(AA)	5.11	[4.09-6.13]	Illumina [905956]	N
724	chr10	18334914	18334915	rs17602253	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	10p12.33	SLC39A12	rs17602253-T	0.988	2E-18	(YKL-40)	65.955	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
724	chr10	18336420	18336421	rs1891392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p12.33		rs1891392-?	NR	1E-15				NR [~ 8900000] (imputed)	N
724	chr10	18348553	18348554	rs11592978	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	10p12.33	NR	rs11592978-?	NR	4E-6		0.8399	[0.77-0.91]	Illumina [NR] (imputed)	N
725	chr10	18359293	18359294	rs75699707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs75699707-A	NR	4E-25		0.0773	[0.063-0.092] unit increase	Affymetrix [9000000] (imputed)	N
725	chr10	18367337	18367338	rs2497818	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	10p12.33	NR	rs2497818-?		2E-6		1.8	[1.41-2.29]	Illumina [539473] (imputed)	N
725	chr10	18377094	18377095	rs11012618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs11012618-C	NR	2E-9		0.0238	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr10	18377094	18377095	rs11012618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs11012618-C	NR	2E-19		0.0357	[0.028-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr10	18388433	18388434	rs10508558	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10p12.33	NR	rs10508558-?	NR	9E-6		1.5425	[NR]	Affymetrix [722112]	N
725	chr10	18392884	18392885	rs11012693	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10p12.33	CACNB2	rs11012693-T	NR	5E-6		0.5901182	[0.35-0.83] unit decrease	Illumina [> 6200000] (imputed)	N
725	chr10	18397246	18397247	rs17661538	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs17661538-C	NR	8E-27		0.0423	[0.035-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr10	18397246	18397247	rs17661538	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	10p12.33	intergenic	rs17661538-?	0.138	1E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
725	chr10	18406885	18406886	rs80262246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.33		rs80262246-?	NR	7E-11				NR [~ 8900000] (imputed)	N
725	chr10	18411648	18411649	rs60721377	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10p12.33	CACNB2	rs60721377-C	0.96	7E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
725	chr10	18419971	18419972	rs4373814	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	CACNB2	rs4373814-G	0.55	5E-11		0.373	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
725	chr10	18419971	18419972	rs4373814	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	CACNB2	rs4373814-G	0.55	9E-8		0.046	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
725	chr10	18419971	18419972	rs4373814	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10p12.33	CACNB2	rs4373814-G	0.55	4E-10		0.218	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
725	chr10	18422971	18422972	rs78736203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs78736203-A	NR	7E-12		0.0403	[0.029-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr10	18425518	18425519	rs12570727	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	10p12.33	ATP6V1E2, RHOQ, PIGF, CRIPT	rs12570727-?		3E-9				NR [7428630] (imputed)	N
725	chr10	18425518	18425519	rs12570727	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	10p12.33	COL3A1, COL5A2, WDR75	rs12570727-?		9E-9				NR [7428630] (imputed)	N
725	chr10	18439034	18439035	rs10828270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p12.33		rs10828270-G	NR	4E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
725	chr10	18440443	18440444	rs1888693	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10p12.33	CACNB2	rs1888693-A	0.34345269941288	4E-9		0.0033327	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
725	chr10	18442481	18442482	rs10740993	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		10p12.33	CACNB2	rs10740993-C	NR	2E-7		0.141	[0.088-0.194] unit decrease	Illumina [2446724] (imputed)	N
725	chr10	18442481	18442482	rs10740993	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		10p12.33	CACNB2	rs10740993-C	NR	2E-9		0.141	[0.096-0.186] unit increase	Illumina [2446724] (imputed)	N
725	chr10	18445087	18445088	rs10740995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10p12.33		rs10740995-?	NR	2E-14				NR [~ 8900000] (imputed)	N
725	chr10	18451835	18451836	rs10764331	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10p12.33	CACNB2	rs10764331-G	0.413287	3E-11		0.053320684	[0.038-0.069] unit increase	Affymetrix [7288503] (imputed)	N
725	chr10	18451835	18451836	rs10764331	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p12.33		rs10764331-?	NR	8E-33				NR [~ 8900000] (imputed)	N
725	chr10	18466377	18466378	rs11012877	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	10p12.33	CACNB2	rs11012877-G	NR	9E-7		1.51	percent increase	Affymetrix [8762422] (imputed)	N
725	chr10	18470328	18470329	rs12413195	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10p12.33	CACNB2	rs12413195-C	0.235191	2E-11		0.04762205	[0.034-0.062] unit increase	Affymetrix [7288503] (imputed)	N
725	chr10	18479338	18479339	rs77353696	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	10p12.33	CACNB2	rs77353696-C	0.049981658	3E-7		0.5532	[0.34-0.77] unit increase	Affymetrix [~ 9800000] (imputed)	N
726	chr10	18506425	18506426	rs1757216	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10p12.33	NR	rs1757216-G	0.152589	1E-8		0.0154368	[0.01-0.021] unit decrease	Affymetrix [15000001]	N
726	chr10	18510447	18510448	rs2489201	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10p12.33	NR	rs2489201-?	NR	3E-14		0.0293	[0.022-0.037] unit increase novel	Illumina [6108953] (imputed)	N
726	chr10	18516410	18516411	rs1757224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs1757224-G	NR	3E-14		0.0255	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
726	chr10	18525169	18525170	rs2482109	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	10p12.33	CACNB2	rs2482109-G		3E-6		0.2978	unit increase	Illumina [5767231] (imputed)	N
726	chr10	18533366	18533367	rs79161397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs79161397-T	NR	2E-14		0.0303	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
726	chr10	18533366	18533367	rs79161397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.33	NR	rs79161397-T	NR	2E-12		0.0278	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
726	chr10	18549015	18549016	rs7099380	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10p12.33	CACNB2	rs7099380-A	NR	2E-6	(EA)	1.0531	[1.03-1.07]	Illumina [6627481] (imputed)	N
726	chr10	18549015	18549016	rs7099380	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10p12.33	CACNB2	rs7099380-A	NR	2E-6		1.047	[1.03-1.07]	Illumina [6627481] (imputed)	N
726	chr10	18549015	18549016	rs7099380	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10p12.33	intergenic	rs7099380-A	NR	7E-8		1.054	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
726	chr10	18549015	18549016	rs7099380	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10p12.33	NR	rs7099380-A	NR	1E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
726	chr10	18549888	18549889	rs73601548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.33	NR	rs73601548-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
726	chr10	18549888	18549889	rs73601548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p12.33		rs73601548-?	NR	3E-9				NR [~ 8900000] (imputed)	N
726	chr10	18552275	18552276	rs2489219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10p12.33		rs2489219-A	0.630904	2E-11		0.0189687	[0.013-0.024] unit increase	Illumina [13479924] (imputed)	N
726	chr10	18552946	18552947	rs72784221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10p12.33	NR	rs72784221-T	NR	3E-9		0.0597	[0.04-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
726	chr10	18554622	18554623	rs1277723	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10p12.33	CACNB2	rs1277723-A	0.77	2E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
726	chr10	18562537	18562538	rs1277733	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p12.33	NA	rs1277733-T	0.7664	4E-9		0.012	[0.0081-0.0159] unit increase	NR [~ 27400000] (imputed)	N
726	chr10	18563984	18563985	rs1277731	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to antiepileptic drugs in genetic generalized epilepsy	608 European ancestry responders, 278 European ancestry non-responders	NA	10p12.33	CACNB2	rs1277731-?	NR	9E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
726	chr10	18573653	18573654	rs72784229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p12.33		rs72784229-G	NR	3E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
726	chr10	18573653	18573654	rs72784229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p12.33		rs72784229-G	NR	5E-13		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
726	chr10	18581487	18581488	rs112475399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10p12.33		rs112475399-A	0.172658	2E-9		0.0256391	[0.017-0.034] unit decrease	Illumina [13479178] (imputed)	N
726	chr10	18584791	18584792	rs7912454	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10p12.33	CACNB2	rs7912454-G	0.17	4E-10	(Japanese)	0.029	[0.019-0.039] unit decrease	Illumina [6108953] (imputed)	N
726	chr10	18593405	18593406	rs16917162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10p12.32	NR	rs16917162-C	NR	1E-11		0.0237	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
726	chr10	18594797	18594798	rs72786007	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p12.32	CACNB2	rs72786007-G	0.870643	5E-8	(22 ms)	0.0434618	[0.027-0.06] unit increase	Affymetrix [10000000] (imputed)	N
726	chr10	18594797	18594798	rs72786007	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p12.32	CACNB2	rs72786007-G	0.870643	4E-8	(24 ms)	0.0434115	[0.027-0.06] unit increase	Affymetrix [10000000] (imputed)	N
726	chr10	18594797	18594798	rs72786007	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p12.32	CACNB2	rs72786007-G	0.870643	2E-8	(26 ms)	0.0440924	[0.028-0.06] unit increase	Affymetrix [10000000] (imputed)	N
726	chr10	18601927	18601928	rs2799573	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10p12.32	CACNB2	rs2799573-?	0.715	4E-8	(Modelling analysis)	1.08	[1.05-1.12]	NR [1252901] (imputed)	N
727	chr10	18641840	18641841	rs1277840	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs1277840-?		9E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
727	chr10	18648504	18648505	rs10764437	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs10764437-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
727	chr10	18653860	18653861	rs7898858	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs7898858-?		2E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18653860	18653861	rs7898858	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs7898858-?		2E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18657520	18657521	rs1325994	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs1325994-?		3E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
727	chr10	18661481	18661482	rs7911193	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	10p12.32	NR	rs7911193-?		1E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
727	chr10	18674301	18674304	rs147375394	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs147375394-?		3E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18674301	18674304	rs147375394	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.32	NR	rs147375394-?		1E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
727	chr10	18680934	18680935	rs10828623	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p12.32	CACNB2	rs10828623-T	NR	6E-6				Illumina [up to 11995908] (imputed)	N
727	chr10	18680934	18680935	rs10828623	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p12.32	CACNB2	rs10828623-T	NR	3E-7	(AA)			Illumina [up to 11995908] (imputed)	N
727	chr10	18685004	18685005	rs113862204	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10p12.32	CACNB2	rs113862204-T	0.31	2E-41	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18686266	18686267	rs6482384	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10p12.32	CACNB2	rs6482384-T	0.31	2E-25	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18695891	18695892	rs7909027	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10p12.31	NR	rs7909027-?	NR	4E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
727	chr10	18705073	18705074	rs976785	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10p12.31	CACNB2	rs976785-T	0.330782	5E-12		0.057924587	[0.041-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
727	chr10	18705335	18705336	rs67744136	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10p12.31	CACNB2	rs67744136-T	0.65	1E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18706043	18706044	rs57071336	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs57071336-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18706319	18706320	rs11014154	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10p12.31	CACNB2	rs11014154-G	0.71899	3E-9		0.0138335	[0.0093-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
727	chr10	18707447	18707448	rs1813353	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10p12.31	CACNB2	rs1813353-T	0.65	3E-32	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18707447	18707448	rs1813353	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10p12.31	CACNB2	rs1813353-?	NR	3E-30				Affymetrix, Illumina [18800000] (imputed)	N
727	chr10	18707447	18707448	rs1813353	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10p12.31	CACNB2	rs1813353-?		2E-21				Affymetrix, Illumina [18800000] (imputed)	N
727	chr10	18707447	18707448	rs1813353	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10p12.31	CACNB2, 3	rs1813353-C	0.342	7E-9	(EA, initial)	0.434	[0.29-0.58] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
727	chr10	18707447	18707448	rs1813353	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10p12.31	CACNB2, 3	rs1813353-C	0.342	4E-13	(EA, initial)	0.332	[0.24-0.42] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
727	chr10	18708797	18708798	rs11014166	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	CACNB2	rs11014166-A		2E-18		0.356	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18708797	18708798	rs11014166	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p12.31	CACNB2	rs11014166-A		7E-8		0.204	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18708797	18708798	rs11014166	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p12.31	CACNB2	rs11014166-A		1E-8	(EA)	0.232	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18708797	18708798	rs11014166	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	CACNB2	rs11014166-A		1E-22		0.242	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18708797	18708798	rs11014166	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10p12.31	CACNB2	rs11014166-T	0.311677171082331	2E-12		0.34797183	[0.25-0.44] unit decrease	Illumina [247039]	N
727	chr10	18708797	18708798	rs11014166	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	CACNB2	rs11014166-A	0.66	7E-7		0.5	[0.30-0.70] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
727	chr10	18708797	18708798	rs11014166	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	CACNB2	rs11014166-A	0.66	6E-8		0.09	[0.05-0.13] log odds increase	Affymetrix, Illumina [2533153] (imputed)	N
727	chr10	18708797	18708798	rs11014166	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10p12.31	CACNB2	rs11014166-A	0.66	1E-8		0.37	[0.25-0.49] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
727	chr10	18712249	18712250	rs4748463	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	10p12.31	CACNB2	rs4748463-A	0.533	2E-6		0.0268	[0.016-0.038] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
727	chr10	18712249	18712250	rs4748463	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10p12.31	CACNB2	rs4748463-A	0.533	2E-6		0.027	[0.016-0.038] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
727	chr10	18712249	18712250	rs4748463	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs4748463-?		5E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18712249	18712250	rs4748463	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs4748463-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
727	chr10	18713569	18713570	rs7074010	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs7074010-?		5E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
727	chr10	18719676	18719677	rs17613287	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10p12.31	CACNB2	rs17613287-A	0.66	7E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18719676	18719677	rs17613287	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10p12.31	CACNB2	rs17613287-A	0.66	9E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
727	chr10	18720844	18720845	rs11014204	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10p12.31	CACNB2	rs11014204-C	0.719772	3E-9		0.0137929	[0.0092-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
727	chr10	18725658	18725659	rs1926026	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10p12.31	NR	rs1926026-?	NR	4E-14		1.12524	[1.09-1.16]	Affymetrix, Illumina [12447948] (imputed)	N
727	chr10	18725984	18725985	rs7095057	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs7095057-?	NR	3E-9				NR [2625067]	N
727	chr10	18726053	18726054	rs7070847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10p12.31		rs7070847-A	NR	3E-11		0.0578	[0.041-0.075] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
727	chr10	18726053	18726054	rs7070847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	10p12.31		rs7070847-A	NR	1E-10		0.0581	[0.04-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
727	chr10	18726053	18726054	rs7070847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10p12.31		rs7070847-A	NR	2E-14		0.0507	[0.038-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
727	chr10	18726053	18726054	rs7070847	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10p12.31	CACNB2	rs7070847-A	0.283561	5E-15		0.05249162	[0.039-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
727	chr10	18726217	18726218	rs7071123	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	10p12.31	CACNB2	rs7071123-?		1E-10				NR [6786993] (imputed)	N
727	chr10	18727958	18727959	rs12258967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10p12.31		rs12258967-G	NR	1E-37		0.0312	[0.026-0.036] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
727	chr10	18727958	18727959	rs12258967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10p12.31		rs12258967-G	NR	7E-24		0.0233	[0.019-0.028] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
727	chr10	18727958	18727959	rs12258967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	10p12.31		rs12258967-G	NR	1E-11		0.0571	[0.04-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
727	chr10	18727958	18727959	rs12258967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10p12.31		rs12258967-G	NR	1E-33		0.0298	[0.025-0.035] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
727	chr10	18727958	18727959	rs12258967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10p12.31		rs12258967-G	NR	1E-22		0.0252	[0.02-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
727	chr10	18727958	18727959	rs12258967	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10p12.31	CACNB2	rs12258967-?	NR	1E-21		0.06391272	NR unit increase	Affymetrix [464137]	N
727	chr10	18727958	18727959	rs12258967	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	10p12.31	CACNB2	rs12258967-G	0.298591	3E-11		0.05833311	[0.041-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
727	chr10	18727958	18727959	rs12258967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p12.31		rs12258967-?	NR	3E-71				NR [~ 8900000] (imputed)	N
727	chr10	18727958	18727959	rs12258967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10p12.31		rs12258967-?	NR	2E-20				NR [~ 8900000] (imputed)	N
727	chr10	18727958	18727959	rs12258967	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p12.31	CACNB2	rs12258967-G	0.7071	8E-34		0.4531	[0.38-0.53] mmHg increase	Affymetrix [NR] (imputed)	N
727	chr10	18727958	18727959	rs12258967	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p12.31	CACNB2	rs12258967-G	0.7069	8E-16		0.2252	[0.17-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
727	chr10	18727958	18727959	rs12258967	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10p12.31	CACNB2	rs12258967-G	0.36	2E-16	(Mean Arterial Pressure)	0.431	[0.33-0.53] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
727	chr10	18727998	18727999	rs10764493	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	10p12.31	NR	rs10764493-?		8E-9				NR [520857]	N
727	chr10	18729854	18729855	rs72786098	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Small vessel stroke	292 European ancestry cases, 17,164 European ancestry controls, 77 African American ancestry cases, 352 African American ancestry controls, 232 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	NA	10p12.31	CACNB2	rs72786098-A	NR	2E-8	(EA)	3.57	[2.27-5.56]	Illumina [up to 13439215] (imputed)	N
727	chr10	18730367	18730368	rs7069923	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	10p12.31	CACNB2	rs7069923-C	0.49	1E-6	(SBP)	0.19	[NR] mm Hg increase	Affymetrix [408775]	N
727	chr10	18733292	18733293	rs4748466	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10p12.31	CACNB2	rs4748466-?	NR	5E-11		0.020889463	[0.015-0.027] unit decrease	NR [7306098]	N
727	chr10	18734527	18734528	rs17691888	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	10p12.31	NR	rs17691888-?	NR	7E-11				Illumina [up to 5582932] (imputed)	N
727	chr10	18734527	18734528	rs17691888	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	10p12.31	NSUN6, CACNB2	rs17691888-G	0.886	1E-10		1.16	[1.11-1.21]	Affymetrix, Illumina [9871789]	N
727	chr10	18736973	18736974	rs11014267	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p12.31	NR	rs11014267-G		9E-7		0.29	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18736973	18736974	rs11014267	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	NR	rs11014267-G		2E-20		0.383	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18736973	18736974	rs11014267	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p12.31	NR	rs11014267-G		3E-9		0.227	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18736973	18736974	rs11014267	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p12.31	NR	rs11014267-G		3E-8	(EA)	0.225	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18736973	18736974	rs11014267	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	NR	rs11014267-G		8E-25		0.259	unit increase	Affymetrix [at least 2696785] (imputed)	N
727	chr10	18740631	18740632	rs12243859	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10p12.31	CACNB2	rs12243859-T	0.326	6E-11		0.402	[0.28-0.52] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
727	chr10	18740631	18740632	rs12243859	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10p12.31	CACNB2	rs12243859-T	0.326	8E-19		0.335	[0.26-0.41] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
727	chr10	18742253	18742254	rs4748468	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	10p12.31	NR	rs4748468-G	0.884	3E-8		1.11149	[1.07-1.15]	Affymetrix, Illumina [7549318] (imputed)	N
728	chr10	18743466	18743467	rs912983	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	10p12.31	NR	rs912983-T	0.1034	2E-8		0.101019025	[0.066-0.136] unit decrease	NR [NR]	N
728	chr10	18745104	18745105	rs7893279	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7893279-?	NR	1E-11				NR [2625067]	N
728	chr10	18745104	18745105	rs7893279	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7893279-T	0.8926	1E-10		0.112801224	[0.078-0.147] unit increase	NR [NR]	N
728	chr10	18745104	18745105	rs7893279	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs7893279-?		4E-10				NR [8377093]	N
728	chr10	18745104	18745105	rs7893279	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA		NR	rs7893279-?		8E-9				NR [8377093]	N
728	chr10	18745104	18745105	rs7893279	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CACNB2	rs7893279-T	NR	9E-14		1.122	[1.09-1.15]	Illumina [6627481] (imputed)	N
728	chr10	18745104	18745105	rs7893279	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CACNB2	rs7893279-T	NR	1E-10	(EA)	1.119	[1.08-1.15]	Illumina [6627481] (imputed)	N
728	chr10	18745104	18745105	rs7893279	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		CACNB2	rs7893279-?	NR	5E-13		1.118	[1.09-1.15]	Illumina [8000000] (imputed)	N
728	chr10	18745104	18745105	rs7893279	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		CACNB2	rs7893279-T	NR	3E-13		1.117	[1.09-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
728	chr10	18745104	18745105	rs7893279	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		ARL5B, CACNB2, NSUN6	rs7893279-T		3E-10		1.1	[1.07-1.14]	Affymetrix, Illumina [NR]	N
728	chr10	18745104	18745105	rs7893279	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs7893279-T	NR	6E-11		1.12	[NR]	Illumina [7158791] (imputed)	N
728	chr10	18745104	18745105	rs7893279	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		CACNB2	rs7893279-T	0.889	2E-12		1.125	[1.088-1.162]	Affymetrix, Illumina [9005918] (imputed)	N
728	chr10	18751102	18751103	rs1998820	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	10p12.31	CACNB2	rs1998820-T	0.886	4E-8		1.0873	[1.06-1.12]	Affymetrix, Illumina [7549318] (imputed)	N
728	chr10	18759536	18759537	rs7076100	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	10p12.31	CACNB2	rs7076100-A	0.405545	5E-11		0.05556316	[0.039-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
728	chr10	18759628	18759629	rs7076247	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	10p12.31	CACNB2	rs7076247-?	0.37	6E-6	(CRP)			Illumina [496032]	N
728	chr10	18782879	18782880	rs8181477	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.31	CACNB2	rs8181477-C	0.419	1E-6	(BMR RQ)	0.04	[NR] unit increase	Illumina [899892]	N
729	chr10	18876083	18876084	rs4445544	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10p12.31	NSUN6	rs4445544-C	NR	3E-8	(EA)	1.074	[1.05-1.1]	Illumina [6627481] (imputed)	N
729	chr10	18876986	18876987	rs11015020	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.31	NR	rs11015020-?	NR	4E-40				Affymetrix [NR]	N
729	chr10	18950554	18950555	rs10829156	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	10p12.31	intergenic	rs10829156-?	0.20	4E-7	(Recessive)	1.28	[1.16-1.41]	Affymetrix [319222]	N
729	chr10	18954936	18954937	rs45593736	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	10p12.31	ARL5B	rs45593736-A	0.02	3E-8		2.38	[1.75-3.23]	NR [8482392] (imputed)	N
729	chr10	18972473	18972474	rs7922005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.31		rs7922005-?	NR	8E-8				NR [~ 8900000] (imputed)	N
729	chr10	18994582	18994583	rs11015781	26385043	Kertai MD	2015-06-17	Am Heart J	Genome-wide association study of new-onset atrial fibrillation after coronary artery bypass grafting surgery.	Postoperative atrial fibrillation in coronary artery bypass grafting surgery	620 European ancestry cases, 257 European ancestry controls	220 cases, 84 controls	10p12.31	LOC100130846, ARL5B	rs11015781-A	0.3	7E-6		1.2	[0.76-1.91]	Illumina [524975]	N
730	chr10	19013395	19013396	rs11015915	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	10p12.31	LOC105376440	rs11015915-A		9E-6		2.2	[1.56-3.12]	Illumina [1909910] (imputed)	N
730	chr10	19090811	19090812	rs913655	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	10p12.31	NR	rs913655-G		8E-6				NR [525577]	N
730	chr10	19108058	19108059	rs76398191	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	10p12.31	ARL5B	rs76398191-C	0.31	2E-7	(male)	0.69	[NR]	Illumina [5730693] (imputed)	N
730	chr10	19110498	19110499	rs118104476	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	10p12.31	NR	rs118104476-A	0.98	3E-6		1.64	[NR]	Affymetrix [87696888] (imputed)	N
731	chr10	19160028	19160029	rs16917919	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NA	10p12.31	intergenic	rs16917919-A	0.37	8E-6		147.6	[NR] unit increase	Illumina [546314]	N
731	chr10	19178880	19178881	rs72781262	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	10p12.31	LOC105376440	rs72781262-G		9E-6		2.18	[1.54-3.07]	Illumina [1909910] (imputed)	N
731	chr10	19191586	19191587	rs186228055	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10p12.31		rs186228055-C	NR	3E-7		1.43147		Affymetrix, Illumina [62056310] (imputed)	N
731	chr10	19209448	19209449	rs192756710	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	10p12.31	NR	rs192756710-T	NR	2E-6		3.24		Illumina [6470615] (imputed)	N
732	chr10	19320085	19320086	rs76225372	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	10p12.31	ARL5B	rs76225372-A	0.912	2E-7	(same direction)	1.21	[1.13-1.31]	Illumina [up to 6000000] (imputed)	N
732	chr10	19321515	19321516	rs150579085	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	10p12.31	NR	rs150579085-C	NR	4E-7		3.26		Illumina [6470615] (imputed)	N
732	chr10	19354243	19354244	rs12761927	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	10p12.31	NR	rs12761927-G	0.123	3E-6		1.53	[1.28-1.83]	Illumina [8672852] (imputed)	N
732	chr10	19361022	19361023	rs11008347	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	10p12.31	NR	rs11008347-G	0.128	1E-6		1.35	[1.20-1.53]	Illumina [9327222] (imputed)	N
733	chr10	19405530	19405531	rs16918253	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.31	LOC100652979	rs16918253-A	0.036	8E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
733	chr10	19435493	19435494	rs2686656	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10p12.31	C10orf112	rs2686656-A	NR	6E-6	(sleep latency)	0.2982	[0.17-0.43] unit decrease	Affymetrix [7141204] (imputed)	N
733	chr10	19457386	19457387	rs117826205	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	10p12.31	ARL5B	rs117826205-C	0.026	6E-6	(EA)	2.72	[NR]	Illumina [6728637] (imputed)	N
734	chr10	19560959	19560960	rs8181385	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		10p12.31	PLXDC2	rs8181385-C	NR	7E-7		0.09	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
734	chr10	19639803	19639803	rs141006821	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10p12.31	Intergenic	rs141006821-?		6E-6		85.7	[48.66-122.74] unit decrease	Illumina [~ 10000000] (imputed)	N
736	chr10	19799875	19799876	rs118005949	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10p12.31		rs118005949-?	NR	4E-6		0.8758192	[0.5-1.25] unit increase	Illumina [9842460] (imputed)	N
736	chr10	19823466	19823467	rs10764052	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	10p12.31	C10orf112	rs10764052-C		4E-6		1.19	[1.11-1.28]	Illumina [569200]	N
736	chr10	19834794	19834795	rs3844357	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	10p12.31	MALRD1	rs3844357-G	0.14	8E-6	(female)	0.311	[0.18-0.45] unit decrease	Illumina [6380737] (imputed)	N
737	chr10	19925203	19925204	rs12767973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10p12.31		rs12767973-G	NR	2E-12		0.0128	[0.0093-0.0163] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
737	chr10	19929512	19929513	rs1326986	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	10p12.31	NR	rs1326986-C	0.05	4E-6		1.9	[1.58-2.29]	Illumina [288662]	N
737	chr10	19934812	19934813	rs11010905	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p12.31	AK297683	rs11010905-A	0.507	7E-12		0.1336	[0.095-0.172] mmHg increase	Affymetrix [NR] (imputed)	N
737	chr10	19934812	19934813	rs11010905	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10p12.31	MALRD1	rs11010905-A	0.4889	4E-16		0.1417	[0.11-0.18] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
737	chr10	19946682	19946683	rs61844365	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p12.31	MALRD1	rs61844365-T	0.0234157550082691	7E-6	(G_Barnesiella_HB)	0.901832	[0.51-1.29] unit decrease	Illumina [7711310] (imputed)	N
737	chr10	20015406	20015407	rs143752272	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	10p12.31	NR	rs143752272-?	NR	8E-6		0.243	[0.14-0.35] unit increase	Illumina [at least 560000] (imputed)	N
737	chr10	20030441	20030442	rs11011369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p12.31	PLXDC2	rs11011369-A	0.9078125	4E-7	(PLXDC2, 10576_7_3)	0.2141951	[0.13-0.3] unit increase	Illumina [> 1000000] (imputed)	N
738	chr10	20081471	20081472	rs10827858	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p12.31	NR	rs10827858-T	0.492	6E-13				NR [9056863] (imputed)	N
738	chr10	20105222	20105223	rs7094178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.31		rs7094178-A	0.47	3E-13		7.31	z score increase	Affymetrix [9061022] (imputed)	N
738	chr10	20105222	20105223	rs7094178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p12.31		rs7094178-A	0.47	6E-12		6.89	z score increase	Affymetrix [9061022] (imputed)	N
738	chr10	20105222	20105223	rs7094178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p12.31	NR	rs7094178-A	0.44	2E-8				NR [9056863] (imputed)	N
738	chr10	20143108	20143109	rs74119759	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.31	PLXDC2	rs74119759-C	0.843243	7E-31		0.0293592	[0.024-0.034] unit increase	NR [13737936] (imputed)	N
738	chr10	20143108	20143109	rs74119759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.31		rs74119759-?	NR	1E-27				NR [~ 8900000] (imputed)	N
738	chr10	20143108	20143109	rs74119759	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.31		rs74119759-?	NR	5E-27		0.0295501	[0.024-0.035] unit increase	Affymetrix [20259828] (imputed)	N
738	chr10	20143108	20143109	rs74119759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.31	PLXDC2	rs74119759-C	0.841266	5E-8	(women)	0.0352917	[0.023-0.048] unit increase	NR [17166351] (imputed)	N
738	chr10	20143108	20143109	rs74119759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.31	PLXDC2	rs74119759-C	0.840841	1E-12		0.0341206	[0.025-0.043] unit increase	NR [17166351] (imputed)	N
738	chr10	20143108	20143109	rs74119759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.31	PLXDC2	rs74119759-C	0.840355	9E-6	(men)	0.0326361	[0.019-0.047] unit increase	NR [17166351] (imputed)	N
738	chr10	20153909	20153910	rs11011650	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	10p12.31	PLXDC2	rs11011650-T	0.121	8E-7	(EA)	4.94	z score decrease	Affymetrix, Illumina [9000000] (imputed)	N
738	chr10	20160972	20160973	rs72784146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p12.31		rs72784146-?	NR	9E-18				NR [~ 8900000] (imputed)	N
738	chr10	20163992	20163993	rs11011653	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	10p12.31	PLXDC2	rs11011653-?	0.66	1E-6		1.69	[1.35-2.13]	Illumina [~ 10500000] (imputed)	N
739	chr10	20199495	20199496	rs35049778	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	10p12.31		rs35049778-A	0.28	9E-10		0.06	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
739	chr10	20217659	20217660	rs11011683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NID1	5,362 Icelandic ancestry individuals	NA	10p12.31		rs11011683-G	0.2222	3E-15		0.177361	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20220389	20220390	rs113161918	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.31	NR	rs113161918-G	0.02091	3E-9	(DDB1)	0.1727	NR unit increase	Illumina [1671387] (imputed)	N
739	chr10	20220845	20220846	rs927826	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	10p12.31		rs927826-G	0.2997	2E-12		0.135895	[0.098-0.174] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20220845	20220846	rs927826	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH7	5,355 Icelandic ancestry individuals	NA	10p12.31		rs927826-G	0.2997	3E-20		0.183603	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20220845	20220846	rs927826	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8G	5,344 Icelandic ancestry individuals	NA	10p12.31		rs927826-G	0.2997	4E-17		0.161768	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20220845	20220846	rs927826	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis	510 European ancestry individuals	1,156 European ancestry individuals	10p12.31	PLXDC2	rs927826-G	0.293	8E-15		0.062	[0.042-0.082] unit decrease	NR [6264382] (imputed)	N
739	chr10	20220845	20220846	rs927826	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	10p12.31	PLXDC2	rs927826-?	NR	4E-19		0.05882	[0.046-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
739	chr10	20223449	20223450	rs9651367	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10p12.31	PLXDC2	rs9651367-A	0.281344	1E-14	(EA, Nidogen-1)	0.3553	[0.27-0.44] unit decrease	Affymetrix [509946]	N
739	chr10	20225653	20225654	rs2148299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.31	PLXDC2	rs2148299-G	0.712	6E-15	(Torsin-1A-interacting protein 1, TOR1AIP1.9039.47.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
739	chr10	20227266	20227267	rs1409338	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	10p12.31	PLXDC2	rs1409338-?	NR	3E-7		0.076	[0.047-0.105] unit decrease	NR [6264382] (imputed)	N
739	chr10	20227266	20227267	rs1409338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.31	PLXDC2	rs1409338-G	0.711	3E-25	(T-cell surface glycoprotein CD3 epsilon chain, CD3E.8069.85.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
739	chr10	20227266	20227267	rs1409338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.31	PLXDC2	rs1409338-G	0.711	1E-12	(Solute carrier family 22 member 16, SLC22A16.9969.8.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
739	chr10	20235462	20235463	rs7895470	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	10p12.31	PLXDC2	rs7895470-?	NR	3E-9		0.0528	[0.035-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
739	chr10	20260368	20260369	rs10159712	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DTX1	5,356 Icelandic ancestry individuals	NA	10p12.31		rs10159712-G	0.2839	1E-12		0.146205	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20260368	20260369	rs10159712	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C11orf87	5,363 Icelandic ancestry individuals	NA	10p12.31		rs10159712-G	0.2839	2E-18		0.180109	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
739	chr10	20260368	20260369	rs10159712	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p12.31	PLXDC2	rs10159712-A	0.706	1E-21	(Cadherin-7, CDH7.7959.34.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
739	chr10	20280611	20280612	rs7923280	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Enterorhabdus id.820)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	10p12.31		rs7923280-A	NR	5E-7		5.0173626	z score increase	Affymetrix, Illumina [NR] (imputed)	N
739	chr10	20302571	20302572	rs12218391	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p12.31	NR	rs12218391-?	NR	2E-6	(EA)	0.2158	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
739	chr10	20309484	20309485	rs7076757	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	10p12.31	PLXDC2	rs7076757-G	0.787	4E-6		1.1445038	1.08128598-1.21141764	Affymetrix, Illumina [7701827] (imputed)	N
739	chr10	20311686	20311687	rs12358258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p12.31	Intergenic	rs12358258-T	0.2096	4E-8	(MTAG)	0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
739	chr10	20311686	20311687	rs12358258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.31	Intergenic	rs12358258-T	0.2062	3E-8	(MTAG)	0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
740	chr10	20329942	20329943	rs17688827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.31		rs17688827-?	NR	7E-26				NR [~ 8900000] (imputed)	N
740	chr10	20329942	20329943	rs17688827	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.31		rs17688827-?	NR	2E-22		0.0199152	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
740	chr10	20329942	20329943	rs17688827	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.31	PLXDC2	rs17688827-A	0.578194	4E-9	(women)	0.0262927	[0.017-0.035] unit increase	NR [17166351] (imputed)	N
740	chr10	20329942	20329943	rs17688827	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.31	PLXDC2	rs17688827-A	0.576772	5E-12		0.0228738	[0.016-0.03] unit increase	NR [17166351] (imputed)	N
740	chr10	20379377	20379378	rs10764201	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.31	PLXDC2	rs10764201-C	0.482981	1E-27		0.0200912	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
740	chr10	20379377	20379378	rs10764201	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.31		rs10764201-?	NR	2E-23		0.0203878	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
740	chr10	20415386	20415387	rs192827957	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	10p12.31	PLXDC2	rs192827957-?	NR	5E-7		5.01	NR unit decrease	Illumina [up to 1520000] (imputed)	N
740	chr10	20415386	20415387	rs192827957	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	10p12.31	PLXDC2	rs192827957-?	NR	4E-7		5.084	NR unit decrease	Illumina [up to 1520000] (imputed)	N
740	chr10	20434779	20434780	rs4634985	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	10p12.31	PLXDC2	rs4634985-A	0.31	3E-6	(Hispanic)	1.54	[NR]	Illumina [1795103]	N
741	chr10	20513546	20513547	rs9633643	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p12.31	PLXDC2	rs9633643-T	0.2236	7E-9		0.17	[0.11-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
741	chr10	20513948	20513949	rs144338997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.31		rs144338997-?	NR	3E-8				NR [~ 8900000] (imputed)	N
741	chr10	20529469	20529470	rs73605614	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	PLXDC2	rs73605614-A		1E-8		0.177	unit decrease	Affymetrix [at least 2696785] (imputed)	N
741	chr10	20542633	20542634	rs1571942	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA		PLXDC2	rs1571942-C	NR	3E-7				Illumina [~ 550000]	N
741	chr10	20565764	20565765	rs12355139	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	10p12.31	MIR4675, PLXDC2	rs12355139-?	NR	5E-6				Illumina [9143600] (imputed)	N
741	chr10	20575350	20575351	rs57624458	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	10p12.31	PLXDC2	rs57624458-T	0.0977	4E-6		0.8398	[0.48-1.2] unit increase	Illumina [9520174] (imputed)	N
741	chr10	20576241	20576242	rs36000080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p12.31	Intergenic	rs36000080-T	0.7629	2E-8	(MTAG)	0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
741	chr10	20576241	20576242	rs36000080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.31	Intergenic	rs36000080-T	0.7691	7E-9	(MTAG)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
742	chr10	20593086	20593087	rs12219125	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	10p12.31	intergenic	rs12219125-T	NR	9E-9				Illumina [~ 550000]	N
742	chr10	20674652	20674653	rs12772794	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	10p12.31	AL353790.1, RP11-337N19.1	rs12772794-?	NR	7E-6				Illumina [874956]	N
742	chr10	20698749	20698750	rs7081959	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p12.31	NEBL	rs7081959-?	NR	9E-6	(CE 18:3)	0.6755253	[0.38-0.97] unit decrease	Affymetrix [at least 2500000] (imputed)	N
743	chr10	20747421	20747422	rs10828055	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10p12.31	MIR4675	rs10828055-A	0.3	9E-6	(EA)			Illumina [4404269] (imputed)	N
743	chr10	20792333	20792334	rs7897194	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	10p12.31	intergenic	rs7897194-?	NR	8E-6	(NSM vs. Control)	2.91	[NR]	Affymetrix [703012]	N
743	chr10	20810524	20810525	rs16920624	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	10p12.31	intergenic	rs16920624-?	0.07	7E-7	(whole sample)	16.0	[NR] unit decrease	Illumina [539391]	N
743	chr10	20834439	20834440	rs11012129	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	10p12.31	MIR4675	rs11012129-T	0.945	3E-7	(Male)	0.375	[0.26-0.49]	NR [up to 1668434] (imputed)	N
744	chr10	20862400	20862401	rs11012167	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.31	NR	rs11012167-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
744	chr10	20865156	20865157	rs11819199	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	10p12.31	MIR4675	rs11819199-G	0.06	3E-7		1.62	[NR]	Illumina [1468075]	N
744	chr10	20899607	20899608	rs2359536	26029870	Ye Z	2015-06-01	Nat Genet	Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma.	Sporadic pituitary adenoma	771 Han Chinese cases, 2,788 Han Chinese controls	2,542 Han Chinese cases, 3,620 Han Chinese controls	10p12.31	NEBL, MIR4675	rs2359536-G	0.082	2E-10		1.44	[1.29-1.62]	Illumina [720770]	N
744	chr10	20899607	20899608	rs2359536	20610895	Koriyama H	2010-07-02	J Atheroscler Thromb	Identification of evidence suggestive of an association with peripheral arterial disease at the OSBPL10 locus by genome-wide investigation in the Japanese population.	Peripheral artery disease	195 Japanese ancestry cases, 1,358 Japanese ancestry controls	699 Japanese ancestry cases, 1,540 Japanese ancestry controls	10p12.31	intergenic	rs2359536-C	0.032	2E-6		1.84	[1.43-2.37]	Perlegen [222285]	N
744	chr10	20905268	20905269	rs10764256	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.31	NR	rs10764256-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
744	chr10	20905268	20905269	rs10764256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p12.31		rs10764256-?	NR	4E-10				NR [~ 8900000] (imputed)	N
744	chr10	20915084	20915085	rs1925531	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	10p12.31	MIR4675, NEBL	rs1925531-A	0.55	1E-6		0.21	unit increase	Illumina [5600000] (imputed)	N
744	chr10	20915084	20915085	rs1925531	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (global cognition) (slope of z-scores)	1,145 European ancestry individuals	NA	10p12.31	MIR4675, NEBL	rs1925531-A	0.55	7E-8				Illumina [5600000] (imputed)	N
744	chr10	20919980	20919981	rs7918674	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<70%) in never smokers	77 European ancestry cases, 355 European ancestry controls	NA	10p12.31		rs7918674-C	NR	2E-6		2.572	[2.18-2.96]	Illumina [242926]	N
744	chr10	20922642	20922643	rs7092992	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to valproic acid in focal epilepsy	202 European ancestry cases, 528 European ancestry controls	NA			rs7092992-?	NR	4E-6				Illumina [NR] (imputed)	N
744	chr10	20922642	20922643	rs7092992	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to calcium-channel-Active anticonvulsants in focal epilepsy	214 European ancestry cases, 410 European ancestry controls	NA			rs7092992-?	NR	4E-6				Illumina [NR] (imputed)	N
744	chr10	20970476	20970477	rs11012265	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	10p12.31	intergenic	rs11012265-?	NR	9E-6	(AA)	2.173913	[1.54-3.03]	Illumina [at least 756588]	N
745	chr10	20977154	20977155	rs11012270	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	10p12.31	Intergenic	rs11012270-?		2E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit increase	Illumina [5137218] (imputed)	N
745	chr10	20990821	20990822	rs6482144	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.31	NR	rs6482144-?	NR	1E-8				Affymetrix [NR]	N
745	chr10	21006745	21006746	rs141236446	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	10p12.31	NR	rs141236446-?	NR	6E-6		0.3314	[0.19-0.47] unit decrease	Illumina [at least 560000] (imputed)	N
745	chr10	21030795	21030796	rs140244749	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	10p12.31	NR	rs140244749-T		6E-6		0.7943	[0.45-1.14] SD units increase	NR [10700000] (imputed)	N
745	chr10	21030853	21030854	rs1326248	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	10p12.31	NEBL	rs1326248-C	NR	4E-6	(women)	0.166	[0.095-0.237] unit increase	Illumina [5527232] (imputed)	N
745	chr10	21032325	21032326	rs118186656	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10p12.31	NR	rs118186656-?	NR	5E-6		7454.7363	NR unit decrease	Illumina [2379855]	N
745	chr10	21037293	21037294	rs10732433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10p12.31		rs10732433-T	NR	9E-16		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
745	chr10	21037293	21037294	rs10732433	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p12.31	intergenic	rs10732433-T	0.445	9E-13		0.1784	[0.13-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
745	chr10	21052619	21052620	rs2148307	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	10p12.31	PLXDC2, NEBL	rs2148307-?	NR	6E-13		1.0764263	[1.05-1.1]	Illumina [13729857] (imputed)	N
745	chr10	21057544	21057545	rs1966203	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p12.31	MIR4675, NEBL	rs1966203-C		2E-8		0.143	unit decrease	Affymetrix [at least 2696785] (imputed)	N
745	chr10	21099583	21099584	rs76638898	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.31	NR	rs76638898-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
746	chr10	21157620	21157621	rs2296610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10p12.31		rs2296610-T	NR	1E-8		0.1539	[0.1-0.21] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
746	chr10	21157620	21157621	rs2296610	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	10p12.31		rs2296610-T	0.123246107	1E-9		1.1099727	[1.073316908-1.147880301]	Illumina [8919992] (imputed)	N
746	chr10	21157620	21157621	rs2296610	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	10p12.31	NEBL	rs2296610-T	0.125	2E-14		1.195	[1.141-1.251]	Illumina [5018049] (imputed)	N
746	chr10	21168102	21168103	rs16921209	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	10p12.31	NEBL	rs16921209-G	0.007	7E-9		32.22	[NR]	Affymetrix [559609]	N
746	chr10	21171665	21171666	rs541494653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10p12.31	NEBL	rs541494653-C	0.9977	5E-6		0.5881	[0.34-0.84] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
746	chr10	21171665	21171666	rs541494653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10p12.31	NEBL	rs541494653-C	0.9977	5E-6		0.5881	[0.34-0.84] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
746	chr10	21171992	21171993	rs76296059	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10p12.31	NEBL	rs76296059-C	NR	5E-9		1.457	[0.97-1.94] unit increase	Illumina [NR] (imputed)	N
746	chr10	21198379	21198380	rs11012384	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	10p12.31	NEBL	rs11012384-?	NR	4E-6		0.011	[0.0062-0.0158] unit increase	Illumina [5527232] (imputed)	N
746	chr10	21210537	21210538	rs4748734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p12.31		rs4748734-?	NR	2E-14				NR [~ 8900000] (imputed)	N
746	chr10	21215505	21215506	rs45559637	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	10p12.31	NR	rs45559637-C		7E-6		0.773	[0.44-1.11] SD units increase	NR [10700000] (imputed)	N
747	chr10	21259143	21259144	rs4748741	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	10p12.31	NEBL	rs4748741-T	0.04	4E-7	(women)	0.35	[0.21-0.49] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
747	chr10	21275352	21275353	rs11012462	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	10p12.31		rs11012462-?	NR	1E-6				Illumina [3311160] (imputed)	N
747	chr10	21292922	21292923	rs11012476	28388302	Petros Z	2017-04-01	OMICS	Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs.	Liver injury in combined anti-retroviral and anti-tuberculosis drug-treated HIV with tuberculosis	27 Ethiopian cases with HIV and tuberculosis, 159 Ethiopian controls with HIV and tuberculosis.	8 Ethiopian cases with HIV and tuberculosis, up to 108 Ethiopian controls with HIV and tuberculosis.	10p12.31	NEBL	rs11012476-A	0.03	1E-6		14.3	[5.3-39.9]	Illumina [662807]	N
747	chr10	21315552	21315553	rs3858202	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.31	NEBL	rs3858202-A	0.3975	7E-15		0.0146505	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
747	chr10	21315552	21315553	rs3858202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.31		rs3858202-?	NR	2E-10				NR [~ 8900000] (imputed)	N
747	chr10	21315552	21315553	rs3858202	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.31		rs3858202-?	NR	2E-12		0.0143502	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
747	chr10	21322857	21322858	rs579249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p12.31	Intergenic	rs579249-G	0.3974	6E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
747	chr10	21340092	21340093	rs74807419	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	10p12.31	NEBL	rs74807419-?		6E-8	(Adalimumab)	0.66	[0.42-0.9] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
747	chr10	21347417	21347418	rs12263258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p12.31	Intergenic	rs12263258-A	0.7828	3E-8	(MTAG)	0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
747	chr10	21353146	21353146	rs11453507	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	10,652 European, African American, Hispanic/Latino or East Asian ancestry female individuals	NA	10p12.31		rs11453507-CA	NR	6E-8		0.446	[0.29-0.61] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
748	chr10	21436221	21436222	rs12243039	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	10p12.31	C10orf113	rs12243039-?	0.01	8E-6	(Breast cancer, overall toxicity, multivariable analysis)	3.28		Illumina [2417493] (imputed)	N
748	chr10	21436221	21436222	rs12243039	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	10p12.31	C10orf113	rs12243039-?	0.01	6E-6	(All samples, overall toxicity, multivariable analysis)	3.39		Illumina [2417493] (imputed)	N
748	chr10	21437860	21437861	rs190927291	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	10p12.31	NEBL	rs190927291-C	0.99	9E-12		0.03	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
748	chr10	21448366	21448367	rs2768664	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	10p12.31		rs2768664-C	0.511544	3E-6		0.0120759	[0.0071-0.0171] unit increase	Illumina [13900000] (imputed)	N
748	chr10	21463739	21463740	rs145215398	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p12.31	NR	rs145215398-?	NR	1E-8				Illumina [7760689] (imputed)	N
748	chr10	21483260	21483261	rs28411929	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10p12.31		rs28411929-?	NR	6E-6		0.11	[0.063-0.157] unit increase	Affymetrix, Illumina [NR] (imputed)	N
749	chr10	21512875	21512876	rs143777376	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	10p12.31		rs143777376-G	0.96999	1E-5		0.0252591	[0.014-0.036] unit decrease	Illumina [13900000] (imputed)	N
749	chr10	21519534	21519535	rs116478824	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	NR	rs116478824-C	0.0455	5E-6	(EA)	0.0675	[0.038-0.097] unit increase	Illumina [~ 11800000] (imputed)	N
749	chr10	21559883	21559884	rs12762379	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10p12.31	NEBL	rs12762379-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
749	chr10	21567564	21567565	rs3847375	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	10p12.31	intergenic	rs3847375-?	NR	1E-6	(EA)	1.46	[NR]	Illumina [up to 531195]	N
749	chr10	21603186	21603187	rs16921721	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10p12.31	NEBL	rs16921721-C	NR	4E-8		0.0098008	[0.0063-0.0133] unit increase	Affymetrix [10061374] (imputed)	N
750	chr10	21694218	21694219	rs143362648	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10p12.31	NR	rs143362648-?	NR	5E-7		0.5559	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
750	chr10	21701734	21701735	rs11595127	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p12.31	NR	rs11595127-?	NR	2E-8				Illumina [7760689] (imputed)	N
750	chr10	21736099	21736100	rs12769257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p12.31	NR	rs12769257-C	NR	1E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr10	21754761	21754762	rs12770245	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.31	NR	rs12770245-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
751	chr10	21764468	21764469	rs7100317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p12.31		rs7100317-?	NR	7E-10				NR [~ 8900000] (imputed)	N
751	chr10	21764468	21764469	rs7100317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.31		rs7100317-?	NR	2E-9				NR [~ 8900000] (imputed)	N
751	chr10	21765230	21765231	rs113679437	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p12.31	NR	rs113679437-?	NR	9E-9				Illumina [7760689] (imputed)	N
751	chr10	21783633	21783634	rs12770228	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	10p12.31	NR	rs12770228-A	NR	5E-6		0.01319	[0.0075-0.0189] unit decrease	Illumina [541493]	N
751	chr10	21783633	21783634	rs12770228	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10p12.31	C10orf114	rs12770228-A	0.315	8E-11		0.016	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
751	chr10	21783633	21783634	rs12770228	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10p12.31	NR	rs12770228-G	NR	6E-9		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
751	chr10	21790475	21790476	rs12357321	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	10p12.31	NEBL	rs12357321-G	0.69	1E-9		0.032	unit decrease	NR [2324712] (imputed)	N
751	chr10	21790475	21790476	rs12357321	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10p12.31	NR	rs12357321-A	0.3181	1E-9	(total)	515.0637	[348.45-681.68] unit decrease	Affymetrix, Illumina [NR]	N
751	chr10	21793823	21793824	rs11012725	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p12.31		rs11012725-T	0.37	2E-48		14.64	z score increase	Affymetrix [9061022] (imputed)	N
751	chr10	21799725	21799726	rs12256551	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p12.31	NR	rs12256551-C	0.3481	1E-17				NR [9056863] (imputed)	N
751	chr10	21799725	21799726	rs12256551	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10p12.31	NR	rs12256551-?		1E-18				NR [7428630] (imputed)	N
751	chr10	21799725	21799726	rs12256551	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs12256551-?		1E-27				NR [7428630] (imputed)	N
751	chr10	21806831	21806832	rs946711	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1, EBLN1	rs946711-?	NR	5E-20		0.0239061	[0.019-0.029] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21806831	21806832	rs946711	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1, EBLN1	rs946711-?	NR	2E-24		0.0265991	[0.021-0.032] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21806831	21806832	rs946711	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs946711-?	NR	8E-17	(male)	0.032187	[0.025-0.04] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21806831	21806832	rs946711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p12.31		rs946711-?	NR	1E-7				NR [~ 8900000] (imputed)	N
751	chr10	21811486	21811487	rs11012730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	10p12.31		rs11012730-A	NR	3E-10		0.0747	[0.052-0.098] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
751	chr10	21819823	21819824	rs12253527	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p12.31		rs12253527-A	0.34	2E-52		15.23	z score increase	Affymetrix [9061022] (imputed)	N
751	chr10	21819823	21819824	rs12253527	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p12.31	NR	rs12253527-A	0.316	1E-17				NR [9056863] (imputed)	N
751	chr10	21819823	21819824	rs12253527	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10p12.31	MLLT10	rs12253527-G	0.678022	2E-20		0.0136135	[0.011-0.016] unit decrease	Affymetrix [12370749]	N
751	chr10	21819823	21819824	rs12253527	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10p12.31	NR	rs12253527-?	NR	1E-8		0.12858	[0.084-0.173] unit increase	Affymetrix [7794483] (imputed)	N
751	chr10	21820649	21820650	rs564819152	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 8am-10am)	88,411 European ancestry individuals	NA	10p12.31		rs564819152-G	0.32	1E-9		0.031	unit decrease	Affymetrix [8951705] (imputed)	N
751	chr10	21820649	21820650	rs564819152	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	10p12.31	SKIDA1	rs564819152-A	0.679	4E-9		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
751	chr10	21821273	21821274	rs7084454	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p12.31	NA	rs7084454-A	0.3086	5E-27		0.0198	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
751	chr10	21821273	21821274	rs7084454	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10p12.31	NA	rs7084454-A	0.3086	5E-27		0.0198	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
751	chr10	21821917	21821918	rs12251016	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10p12.31		rs12251016-?	NR	2E-26				NR [9705931] (imputed)	N
751	chr10	21821917	21821918	rs12251016	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10p12.31	NR	rs12251016-T	NR	5E-7	(random effect)	1.0526316	NR	NR [6904914] (imputed)	N
751	chr10	21821917	21821918	rs12251016	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10p12.31	NR	rs12251016-T	0.3441	4E-10		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
751	chr10	21821917	21821918	rs12251016	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10p12.31	NA	rs12251016-A	0.6574	1E-25		0.021	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
751	chr10	21822855	21822856	rs10828247	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.31		rs10828247-G	0.36	1E-82		19.25	z score increase	Affymetrix [9061022] (imputed)	N
751	chr10	21822855	21822856	rs10828247	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10p12.31		rs10828247-G	NR	3E-13		1.0845987	[1.06-1.11]	Affymetrix [7846216] (imputed)	N
751	chr10	21822855	21822856	rs10828247	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10p12.31		rs10828247-G	NR	3E-13		1.0887316	NR	Affymetrix [7846216] (imputed)	N
751	chr10	21822855	21822856	rs10828247	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	10p12.31	NR	rs10828247-A	0.6623	2E-12		0.0133	[0.0096-0.017] unit decrease	NR [~ 27400000] (imputed)	N
751	chr10	21824726	21824727	rs10828249	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10p12.31		rs10828249-?	NR	5E-8		1.08436	[1.06-1.11]	NR [682398]	N
751	chr10	21830103	21830104	rs11012732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	10p12.31		rs11012732-G	NR	4E-19		0.0233	[0.018-0.028] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
751	chr10	21830103	21830104	rs11012732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p12.31		rs11012732-G	NR	4E-20		0.0227	[0.018-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
751	chr10	21830103	21830104	rs11012732	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10p12.31		rs11012732-G	0.33	1E-21				NR [NR] (imputed)	N
751	chr10	21830103	21830104	rs11012732	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10p12.31		rs11012732-G	0.33	2E-24		0.016	% increase	NR [NR] (imputed)	N
751	chr10	21830103	21830104	rs11012732	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	10p12.31		rs11012732-G	0.33	3E-7		0.011	U/L decrease	NR [NR] (imputed)	N
751	chr10	21830103	21830104	rs11012732	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10p12.31	NR	rs11012732-A	0.669722	1E-9		0.0130892	[0.0089-0.0173] unit decrease	NR [NR]	N
751	chr10	21830103	21830104	rs11012732	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.31	NR	rs11012732-?	NR	5E-25				Affymetrix [~ 8270000] (imputed)	N
751	chr10	21830103	21830104	rs11012732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p12.31		rs11012732-?	NR	1E-10				NR [~ 8900000] (imputed)	N
751	chr10	21830103	21830104	rs11012732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p12.31		rs11012732-?	NR	2E-25				NR [~ 8900000] (imputed)	N
751	chr10	21830103	21830104	rs11012732	21804547	Dobbins SE	2011-07-31	Nat Genet	Common variation at 10p12.31 near MLLT10 influences meningioma risk.	Meningioma	859 European ancestry cases, 704 European ancestry controls	774 European ancestry cases, 1,764 European ancestry controls	10p12.31	MLLT10	rs11012732-A	0.32	2E-14		1.46	[1.32-1.61]	Illumina [270875]	N
751	chr10	21830579	21830580	rs12246842	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	10p12.31	NR	rs12246842-A	NR	7E-9		0.726	unit increase	Affymetrix [14661600] (imputed)	N
751	chr10	21834535	21834536	rs7098100	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs7098100-?	NR	5E-11	(female)	0.0228383	[0.016-0.03] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21834535	21834536	rs7098100	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	NR	rs7098100-A	0.3537	1E-18	(EA)	0.0572	[0.044-0.07] unit increase	Illumina [~ 11800000] (imputed)	N
751	chr10	21849768	21849769	rs11012737	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	10p12.31	MLLT10	rs11012737-?		4E-12		1.07	[1.05-1.10]	Affymetrix, Illumina [43000000] (imputed)	N
751	chr10	21869608	21869609	rs1243191	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1, EBLN1	rs1243191-?	NR	3E-8		0.0189441	[0.012-0.026] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21872912	21872913	rs7894565	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	10p12.31	NR	rs7894565-?		4E-10				NR [7428630] (imputed)	N
751	chr10	21872912	21872913	rs7894565	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10p12.31	AFAP1, AC097381.1	rs7894565-?		4E-13				NR [7428630] (imputed)	N
751	chr10	21872912	21872913	rs7894565	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	10p12.31	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs7894565-?		1E-9				NR [7428630] (imputed)	N
751	chr10	21872912	21872913	rs7894565	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs7894565-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
751	chr10	21872912	21872913	rs7894565	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs7894565-?		3E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
751	chr10	21872912	21872913	rs7894565	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs7894565-?		5E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
751	chr10	21872912	21872913	rs7894565	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	10p12.31	NR	rs7894565-?		3E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
751	chr10	21873294	21873295	rs7905967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10p12.31		rs7905967-T	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
751	chr10	21878143	21878144	rs35587371	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	10p12.31	MLLT10	rs35587371-A	0.3	2E-8		5.61	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
751	chr10	21878831	21878837	rs144962376	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	10p12.31	NR	rs144962376-T	0.309302	7E-9		1.0992962	[1.06472642475689-1.13498849236897]	Illumina [11595112] (imputed)	N
751	chr10	21878831	21878837	rs144962376	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	10p12.31	NR	rs144962376-T	0.309302	8E-10		1.0908245	[1.06101278339562-1.12147377629663]	Illumina [11595112] (imputed)	N
751	chr10	21878831	21878837	rs144962376	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	10p12.31	NR	rs144962376-T	0.309302	2E-8		1.09834	[1.06283348839533-1.13503280772478]	Illumina [11595112] (imputed)	N
751	chr10	21878831	21878837	rs144962376	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	10p12.31	NR	rs144962376-T	0.309302	4E-11		1.0959264	[1.06647199521962-1.12619421828606]	Illumina [11595112] (imputed)	N
751	chr10	21879083	21879084	rs9971210	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	10p12.31	MLLT10	rs9971210-G	0.489597	2E-8		0.0365804	[0.024-0.049] unit increase	Affymetrix [9463307] (imputed)	N
751	chr10	21883429	21883430	rs12769128	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs12769128-?	NR	2E-19		8.80897E-4	[-0.00437-0.00613] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21883429	21883430	rs12769128	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs12769128-?	NR	2E-19		0.0240288	[0.019-0.029] unit increase	Affymetrix [25921788] (imputed)	N
751	chr10	21885576	21885577	rs34719019	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	10p12.31		rs34719019-A	0.73	1E-8		0.242	[0.16-0.32] unit increase	Affymetrix [8918919] (imputed)	N
752	chr10	21889137	21889138	rs6482189	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10p12.31	MLLT10	rs6482189-G	0.683	2E-9	(EA)	0.013	[0.0091-0.0169] unit increase	NR [12082474] (imputed)	N
752	chr10	21894027	21894028	rs11012750	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	10p12.31	MLLT10	rs11012750-G		8E-11		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
752	chr10	21894027	21894028	rs11012750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10p12.31		rs11012750-?	NR	3E-8				NR [~ 8900000] (imputed)	N
752	chr10	21907422	21907423	rs1270799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p12.31		rs1270799-G	NR	3E-11		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
752	chr10	21908802	21908803	rs1243188	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p12.31	NA	rs1243188-T	0.7061	2E-14		0.0148	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
752	chr10	21908802	21908803	rs1243188	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	10p12.31	MLLT10	rs1243188-C	0.3	2E-13		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
752	chr10	21912578	21912579	rs1243179	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	10p12.31	NR	rs1243179-?		8E-12	(Fornix (column and body))			NR [8955960] (imputed)	N
752	chr10	21915618	21915619	rs1243180	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	10p12.31	MLLT10	rs1243180-A	0.31	1E-9		1.1	[1.06-1.14]	Illumina [up to 10962898] (imputed)	N
752	chr10	21915618	21915619	rs1243180	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	10p12.31	NEBL, C10orf113, C10orf114, SKIDA1, DNAJC1, MLLT10	rs1243180-T	0.31	2E-8	(All invasive)	1.1	[1.06-1.13]	Illumina [2508744] (imputed)	N
752	chr10	21915618	21915619	rs1243180	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	10p12.31	NEBL, C10orf113, C10orf114, SKIDA1, DNAJC1, MLLT10	rs1243180-T	0.31	1E-7	(Serious invasive)	1.11	[1.07-1.15]	Illumina [2508744] (imputed)	N
752	chr10	21916727	21916728	rs1243182	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10p12.31	NR	rs1243182-?		2E-15		0.0185916	[0.014-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
752	chr10	21916727	21916728	rs1243182	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	10p12.31	MLLT10	rs1243182-T	0.3108	4E-16		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
752	chr10	21931585	21931585	rs552000644	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10p12.31	NR	rs552000644-?	NR	2E-8	(left accumbens area)			NR [9227495] (imputed)	N
752	chr10	21931936	21931937	rs1243184	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10p12.31	MLLT10	rs1243184-T	NR	9E-13		0.00964136	[0.007-0.0123] unit increase	Affymetrix [10061374] (imputed)	N
752	chr10	21957228	21957229	rs2183271	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	10p12.31	MLLT10	rs2183271-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
752	chr10	21957228	21957229	rs2183271	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	10p12.31	NR	rs2183271-C	NR	3E-7		1.22	1.13-1.31	Illumina [8074073] (imputed)	N
752	chr10	21957228	21957229	rs2183271	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	10p12.31	MLLT10	rs2183271-T	0.3578	3E-8		0.014	[0.0091-0.0189] unit decrease	NR [NR]	N
752	chr10	21957228	21957229	rs2183271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p12.31		rs2183271-T	0.6364	2E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
752	chr10	21957228	21957229	rs2183271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.31	Intergenic	rs2183271-T	0.6364	2E-9	(MTAG)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
752	chr10	21982305	21982305	rs71393921	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	10p12.31	NR	rs71393921-?		2E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
752	chr10	21993540	21993540	rs35043348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p12.31		rs35043348-CT	NR	9E-16		0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
752	chr10	21998444	21998445	rs7477335	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	10p12.31		rs7477335-A	0.4845	2E-8		0.11207212	[0.07-0.154] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
753	chr10	22032941	22032942	rs7072776	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10p12.31		rs7072776-A	NR	2E-19		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
753	chr10	22032941	22032942	rs7072776	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	10p12.31	LINC01114	rs7072776-A	0.278052	7E-14	(EA)	0.0103876	[0.0077-0.0131] unit increase	Affymetrix [~ 8800000] (imputed)	N
753	chr10	22032941	22032942	rs7072776	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p12.31	NR	rs7072776-G	0.712	3E-18		0.0103909	[0.0081-0.0127] unit decrease	NR [9732723] (imputed)	N
753	chr10	22032941	22032942	rs7072776	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p12.31	NR	rs7072776-G	0.712	6E-15		0.021974666	[0.016-0.027] unit decrease	NR [~ 10000000] (imputed)	N
753	chr10	22032941	22032942	rs7072776	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10p12.31	NR	rs7072776-G	0.713	1E-9		0.00980249	[0.0066-0.013] unit increase	NR [9732723] (imputed)	N
753	chr10	22032941	22032942	rs7072776	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	DNAJC1	rs7072776-A	0.29	2E-19	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
753	chr10	22032941	22032942	rs7072776	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10p12.31	NR	rs7072776-A	0.29	8E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
753	chr10	22032941	22032942	rs7072776	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10p12.31	NR	rs7072776-A	0.29	1E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
753	chr10	22032941	22032942	rs7072776	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10p12.31	DNAJC1, MLLT10	rs7072776-A	0.29	4E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
753	chr10	22035323	22035324	rs55990219	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10p12.31		rs55990219-C	NR	3E-7		1.2004802	[1.12-1.29]	Affymetrix [7846216] (imputed)	N
753	chr10	22036490	22036491	rs7919823	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	10p12.31	MLLT10	rs7919823-A	0.98	1E-8	(women)	252.13	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
753	chr10	22037808	22037809	rs6482190	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	10p12.31	LOC107984214	rs6482190-A	0.17	9E-9		0.0146	[0.0087-0.0205] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
753	chr10	22057404	22057405	rs7903144	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	10p12.31	DNAJC1	rs7903144-A	0.98	1E-8	(women)	249.29	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
753	chr10	22058136	22058137	rs10740991	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	10p12.31	NR	rs10740991-G	0.2811	1E-20		0.025669042	[0.02-0.031] unit increase	Affymetrix [10549349] (imputed)	N
753	chr10	22073213	22073214	rs11012787	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p12.31		rs11012787-C	0.427	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
753	chr10	22098700	22098701	rs10828266	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	10p12.31	DNAJC1	rs10828266-?	NR	1E-8				NR [~ 24000000] (imputed)	N
754	chr10	22151577	22151578	rs2793351	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	10p12.31	DNAJC1	rs2793351-A	NR	4E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
754	chr10	22151577	22151578	rs2793351	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10p12.31	DNAJC1	rs2793351-A	0.6854	2E-8		0.0121018	[0.0079-0.0163] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
754	chr10	22152197	22152198	rs72806318	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	NR	rs72806318-A	0.0153	5E-19	(EA)	0.2218	[0.17-0.27] unit increase	Illumina [~ 11800000] (imputed)	N
754	chr10	22251379	22251380	rs2807967	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	10p12.31		rs2807967-T	0.281883	8E-9		0.0252475	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
754	chr10	22271083	22271084	rs55672249	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1, EBLN1	rs55672249-?	NR	1E-8		0.0277986	[0.018-0.037] unit increase	Affymetrix [25921788] (imputed)	N
754	chr10	22282044	22282044	rs111841386	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	10p12.31	CASC10, SKIDA1, MLLT10, DNAJC1	rs111841386-?	NR	2E-11		0.0184615	[0.013-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
755	chr10	22285370	22285371	rs4364959	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs4364959-?	NR	2E-15				Affymetrix [NR]	N
755	chr10	22288131	22288132	rs4748779	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10p12.31	EBLN1	rs4748779-T	0.7244	1E-9		0.013735452	[0.0093-0.0181] unit decrease	Affymetrix [11514654] (imputed)	N
755	chr10	22294686	22294687	rs7069830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.31	NR	rs7069830-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
755	chr10	22299502	22299503	rs7898685	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	10p12.31	DNAJC1	rs7898685-A	0.2913	3E-10		0.0428	[0.029-0.056] unit increase	Illumina [NR]	N
755	chr10	22310297	22310298	rs7906649	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	10p12.31		rs7906649-G	0.286	5E-13		1.1	[1.07-1.13]	Affymetrix, Illumina [42907111] (imputed)	N
755	chr10	22310297	22310298	rs7906649	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	10p12.31	EBLN1	rs7906649-G	0.286	2E-15		1.11	[1.08-1.13]	Affymetrix, Illumina [42907111] (imputed)	N
755	chr10	22315842	22315843	rs11814448	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10p12.31		rs11814448-A	NR	4E-18		0.84	[0.8-0.87]	Affymetrix, Illumina [NR] (imputed)	N
755	chr10	22315842	22315843	rs11814448	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	DNAJC1	rs11814448-C	0.02	6E-18	(EA)	1.12	[1.06-1.19] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
755	chr10	22315842	22315843	rs11814448	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10p12.31	NR	rs11814448-C	0.02	3E-13		1.27	[1.19-1.36]	Affymetrix, Illumina [~ 14000000] (imputed)	N
755	chr10	22315842	22315843	rs11814448	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10p12.31	NR	rs11814448-C	0.02	6E-17		1.27	[1.19-1.36]	Affymetrix, Illumina [~ 11600000] (imputed)	N
755	chr10	22315842	22315843	rs11814448	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10p12.31	DNAJC1	rs11814448-C	0.02	9E-16		1.26	[1.18-1.35]	Affymetrix, Illumina [~ 2600000] (imputed)	N
755	chr10	22377957	22377958	rs72810761	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p12.31	NR	rs72810761-?	NR	7E-7		0.3118	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
755	chr10	22393689	22393690	rs3011641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10p12.31	intergenic	rs3011641-A	0.2276	2E-9		0.02558851	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
755	chr10	22394842	22394843	rs3011642	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10p12.31	NR	rs3011642-T	0.2422	1E-12		0.001886	[0.0014-0.0024] unit increase	Affymetrix [NR] (imputed)	N
755	chr10	22397001	22397002	rs72810771	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	NR	rs72810771-T	0.0187	2E-19	(EA)	0.2026	[0.16-0.25] unit increase	Illumina [~ 11800000] (imputed)	N
755	chr10	22397994	22397995	rs3011644	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	10p12.31		rs3011644-?	NR	5E-8				Affymetrix [NR] (imputed)	N
755	chr10	22397994	22397995	rs3011644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10p12.31		rs3011644-C	0.228083	2E-17		0.022540398	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
756	chr10	22427288	22427289	rs148678804	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	10p12.31		rs148678804-A	0.035	2E-18		1.31	[1.23-1.39]	Affymetrix, Illumina [42907111] (imputed)	N
756	chr10	22427288	22427289	rs148678804	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	10p12.31	DNAJC1	rs148678804-A	0.035	1E-22		1.34	[1.26-1.41]	Affymetrix, Illumina [42907111] (imputed)	N
756	chr10	22444235	22444236	rs139594178	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10p12.31		rs139594178-T	0.023181	4E-6		0.10501	[0.061-0.149] unit increase	Affymetrix [15580782] (imputed)	N
756	chr10	22459978	22459979	rs7086226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10p12.31		rs7086226-G	NR	5E-13		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
756	chr10	22494142	22494143	rs12257323	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	10p12.31	EBLN1	rs12257323-T	0.02	4E-8	(women)	237.97	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
756	chr10	22500943	22500944	rs16922097	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.31	NR	rs16922097-C	0.0189	1E-18	(EA)	0.1968	[0.15-0.24] unit increase	Illumina [~ 11800000] (imputed)	N
756	chr10	22504609	22504610	rs703108	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10p12.31	RP11-108B14.5	rs703108-T	0.2459	3E-9		0.02443522	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
757	chr10	22581580	22581581	rs116940348	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	10p12.31	COMMD3, BMI1, SPAG6	rs116940348-A	0.03	1E-14		0.144017	[0.11-0.18] unit increase	Affymetrix [10109774] (imputed)	N
757	chr10	22661763	22661764	rs148927472	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p12.2	SPAG6	rs148927472-?	NR	2E-7		0.06425668	[0.04-0.088] unit decrease	Illumina [27896057] (imputed)	N
757	chr10	22671967	22671968	rs72814839	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.2	NR	rs72814839-C	0.0137	4E-13	(EA)	0.1943	[0.14-0.25] unit increase	Illumina [~ 11800000] (imputed)	N
758	chr10	22747293	22747294	rs12260560	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.2	NR	rs12260560-T	0.01045	3E-10	(ABAT)	2.518	NR unit increase	Illumina [1671387] (imputed)	N
758	chr10	22747293	22747294	rs12260560	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.2	NR	rs12260560-T	0.01045	2E-8	(ALDH4A1)	2.222	NR unit increase	Illumina [1671387] (imputed)	N
758	chr10	22779692	22779693	rs12570045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.2		rs12570045-?	NR	2E-12				NR [~ 8900000] (imputed)	N
759	chr10	22822918	22822918	rs55680103	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	10p12.2	SPAG6, PIP4K2A	rs55680103-?	0.6276	8E-7		0.045	[0.027-0.063] unit increase	Illumina [11434023] (imputed)	N
759	chr10	22827273	22827274	rs11013045	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.2		rs11013045-T	0.38	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
759	chr10	22830540	22830541	rs746203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10p12.2		rs746203-T	0.614338	6E-12		0.0143417	[0.01-0.018] unit decrease	Illumina [13479295] (imputed)	N
759	chr10	22832058	22832059	rs80087712	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	10p12.2		rs80087712-?	NR	2E-7				Affymetrix [810906]	N
759	chr10	22833062	22833063	rs10430590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10p12.2	NR	rs10430590-T	NR	1E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
759	chr10	22838725	22838726	rs7904655	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	10p12.2	PIP4K2A	rs7904655-?	0.0	9E-14				Affymetrix [547296]	N
759	chr10	22839627	22839628	rs2230469	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10p12.2		rs2230469-T	0.6748	9E-12		0.11253299	[0.08-0.145] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
759	chr10	22846734	22846735	rs4748813	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	10p12.2	PIP4K2A	rs4748813-T	NR	3E-20		1.3513513	[NR]	Affymetrix [757935]	N
759	chr10	22847438	22847439	rs7094131	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.2	PIP4K2A	rs7094131-G	0.392	9E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
759	chr10	22847892	22847893	rs7081744	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p12.2	PIP4K2A	rs7081744-?	NR	6E-14		0.022299012	[0.016-0.028] unit decrease	Illumina [27896057] (imputed)	N
759	chr10	22856945	22856946	rs2296624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p12.2		rs2296624-T	NR	4E-15		0.0106	[0.0081-0.0131] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
759	chr10	22856945	22856946	rs2296624	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	10p12.2	PIP4K2A	rs2296624-C	0.67	3E-15		1.25	[1.18-1.32]	Affymetrix, Illumina [~ 6118121] (imputed)	N
759	chr10	22859810	22859811	rs141382055	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	10p12.2		rs141382055-A	NR	3E-6		5.7029	[4.97-6.43]	Illumina [7225561] (imputed)	N
759	chr10	22870078	22870082	rs56333866	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.2	NR	rs56333866-T	0.9624	3E-8	(EA)	0.0928	[0.06-0.126] unit increase	Illumina [~ 11800000] (imputed)	N
759	chr10	22917448	22917449	rs1627549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10p12.2		rs1627549-T	NR	2E-8		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
759	chr10	22926226	22926227	rs1750768	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	10p12.2		rs1750768-C	0.958059	5E-8		0.0565226	[0.036-0.077] unit decrease	NR [11722792] (imputed)	N
760	chr10	22942803	22942807	rs145259294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p12.2	PIP4K2A	rs145259294-A	0.125852	9E-10		0.020502066	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
760	chr10	22948661	22948662	rs80313234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10p12.2		rs80313234-C	0.075377	4E-10		0.0344827	[0.024-0.045] unit decrease	Illumina [13479924] (imputed)	N
760	chr10	22962928	22962929	rs45601232	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	10p12.2	NR	rs45601232-G	NR	4E-9		0.06412	NR unit increase	NR [7259579]	N
760	chr10	22970734	22970735	rs370356098	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.2	NR	rs370356098-C	0.0399	2E-7	(EA)	0.0837	[0.052-0.115] unit decrease	Illumina [~ 11800000] (imputed)	N
760	chr10	22975627	22975628	rs11597784	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	10p12.2	NR	rs11597784-?	NR	9E-8		0.0907544	[0.057-0.124] unit increase	NR [13958389] (imputed)	N
760	chr10	23061261	23061262	rs75951387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.2	NR	rs75951387-C	0.01045	3E-8	(C4B)	0.5922	NR unit increase	Illumina [1671387] (imputed)	N
761	chr10	23099422	23099423	rs16922724	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.2	NR	rs16922724-?	NR	7E-11				Affymetrix [NR]	N
761	chr10	23160819	23160820	rs34368983	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10p12.2	Intergenic	rs34368983-?	NR	9E-6		2.4497795	[NR]	Affymetrix [492217] (imputed)	N
761	chr10	23173319	23173320	rs10828363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p12.2		rs10828363-T	0.282124	5E-22		0.024193866	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
761	chr10	23176725	23176726	rs2364708	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10p12.2	intergenic	rs2364708-A	0.281	3E-9		0.02382508	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
761	chr10	23194252	23194253	rs548206459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	10p12.2	NR	rs548206459-T	6.16E-4	3E-9		2.53759	[1.7-3.38] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
762	chr10	23249108	23249109	rs11013210	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	10p12.2	ARMC3	rs11013210-T	0.21	2E-7		1.18	[1.11-1.26 ]	Illumina [~ 2100000] (imputed)	N
762	chr10	23249217	23249218	rs73600584	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.2	NR	rs73600584-G	0.01045	3E-8	(CRK)	0.007006	NR unit decrease	Illumina [1671387] (imputed)	N
762	chr10	23252878	23252879	rs35508443	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10p12.2	CAMKMT	rs35508443-C	0.380261	1E-19		0.0190649	[0.015-0.023] unit increase	NR [16516521] (imputed)	N
762	chr10	23303252	23303253	rs1054052	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.2	NR	rs1054052-T	0.285370675591254	3E-6	(IGP37)	0.1625	[0.094-0.231] unit decrease	Illumina [~ 2500000] (imputed)	N
762	chr10	23303252	23303253	rs1054052	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.2	NR	rs1054052-T	0.285274903125	6E-7	(IGP36)	0.1727	[0.1-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
762	chr10	23303252	23303253	rs1054052	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.2	NR	rs1054052-T	0.285116272403032	2E-6	(IGP38)	0.1661	[0.098-0.234] unit decrease	Illumina [~ 2500000] (imputed)	N
762	chr10	23303252	23303253	rs1054052	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.2	NR	rs1054052-T	0.28422493357111	6E-6	(IGP33)	0.1566	[0.089-0.224] unit increase	Illumina [~ 2500000] (imputed)	N
763	chr10	23350102	23350103	rs3858207	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	10p12.2	ARMC3	rs3858207-C	0.4898	5E-6		0.2398	[0.14-0.34] unit decrease	Illumina [8203257] (imputed)	N
763	chr10	23369420	23369421	rs722258	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	10p12.2	intergenic	rs722258-T	0.42	3E-6		8.03	[4.68-11.38] unit decrease	Illumina [2380486] (imputed)	N
763	chr10	23393065	23393066	rs1555804	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p12.2	MSRB2, ARMC3, YWHAZP3	rs1555804-G	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
763	chr10	23434743	23434744	rs7893600	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.2	MSRB2	rs7893600-A	0.329	3E-6	(IL6 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
763	chr10	23438846	23438847	rs764586754	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	10p12.2	YWHAZP3	rs764586754-A	0.0014	4E-6		0.8728	[0.5-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
764	chr10	23486296	23486297	rs1886764	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10p12.2	NR	rs1886764-?	NR	4E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
764	chr10	23487777	23487778	rs77065181	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10p12.2	PTF1A	rs77065181-A	0.047	2E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
764	chr10	23578176	23578177	rs117414485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10p12.2		rs117414485-T	0.049778708	1E-9		0.12632945	[0.085-0.167] unit increase	Illumina [13429769] (imputed)	N
764	chr10	23578176	23578177	rs117414485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10p12.2		rs117414485-T	NR	1E-9		0.1263	[0.086-0.167] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
765	chr10	23599557	23599558	rs4748857	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	10p12.2	C10orf67	rs4748857-C	0.73	7E-6		1.16	[1.09-1.24]	Illumina [~ 2100000] (imputed)	N
765	chr10	23601841	23601842	rs11013381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.2		rs11013381-?	NR	8E-11				NR [~ 8900000] (imputed)	N
765	chr10	23608164	23608165	rs6415968	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.2	C10orf67	rs6415968-C	0.547284	4E-12		0.012884	[0.0093-0.0165] unit decrease	NR [13737936] (imputed)	N
765	chr10	23637844	23637845	rs796422700	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.2		rs796422700-?	NR	8E-11		0.0135345	[0.0094-0.0176] unit decrease	Affymetrix [20259828] (imputed)	N
765	chr10	23665437	23665438	rs1398024	18723019	Franke A	2008-07-21	Gastroenterology	Genome-wide association analysis in sarcoidosis and Crohn's disease unravels a common susceptibility locus on 10p12.2.	Crohn's disease and sarcoidosis (combined)	382 European ancestry Crohn's disease cases, 398 European ancestry Sarcoidosis cases, 394 European ancestry controls	660 European ancestry Crohn's disease cases, 657 European ancestry Sarcoidosis cases, 1,091 European ancestry controls	10p12.2	C10orf67	rs1398024-A	0.25	4E-6		1.23	[1.04-1.45]	Affymetrix [83360]	N
765	chr10	23670341	23670342	rs2886497	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	10p12.2	intergenic	rs2886497-G	0.547	6E-6	(AA)	0.44	unit decrease	Illumina [at least 5086170] (imputed)	N
765	chr10	23705450	23705451	rs191044310	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	10p12.2	OTUD1	rs191044310-T	0.9778	6E-7		1.7931969		Illumina [8265319] (imputed)	N
766	chr10	23766136	23766137	rs7909322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p12.2		rs7909322-T	0.319262	1E-12		0.017047118	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
766	chr10	23774714	23774715	rs4522069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.2		rs4522069-?	NR	3E-18				NR [~ 8900000] (imputed)	N
766	chr10	23787084	23787085	rs76675992	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.2	NR	rs76675992-C	0.01394	3E-8	(GLDC)	3.17	NR unit increase	Illumina [1671387] (imputed)	N
766	chr10	23850265	23850266	rs7090769	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10p12.2	NR	rs7090769-A	NR	8E-10		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr10	23858210	23858211	rs16923476	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	10p12.2	OTUD1, KIAA1217	rs16923476-A	0.02	1E-7		1.78	[1.44-2.20]	Affymetrix [~ 2000000] (imputed)	N
767	chr10	23943838	23943839	rs1888765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p12.2		rs1888765-C	0.7815	1E-8	(conditional-joint)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
767	chr10	23953724	23953725	rs11598765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p12.2		rs11598765-A	0.1966	2E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
767	chr10	23953724	23953725	rs11598765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.2	Intergenic	rs11598765-A	0.1966	8E-10	(MTAG)	0.0101	[0.007-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
768	chr10	24041316	24041317	rs10828538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p12.2		rs10828538-T	NR	4E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
768	chr10	24041316	24041317	rs10828538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p12.2		rs10828538-T	NR	3E-8		0.0206	[0.013-0.028] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
768	chr10	24071005	24071006	rs192858301	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p12.2	NR	rs192858301-?	NR	5E-7	(EA)	1.1652	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
769	chr10	24132018	24132019	rs75058681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10p12.2		rs75058681-G	0.153436	3E-8		0.0209271	[0.013-0.028] unit decrease	Illumina [13479924] (imputed)	N
769	chr10	24150316	24150317	rs117900362	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10p12.2	KIAA1217	rs117900362-C	NR	5E-6	(East Asian)	1.198	[1.12-1.28]	Illumina [6627481] (imputed)	N
769	chr10	24164955	24164956	rs11812960	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Tanning	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	10p12.2	NR	rs11812960-?	NR	1E-6				Illumina [at least 241929] (imputed)	N
769	chr10	24209123	24209124	rs12263288	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.2	NR	rs12263288-?	NR	7E-33				Affymetrix [NR]	N
770	chr10	24284650	24284651	rs11013837	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	10p12.2	KIAA1217	rs11013837-T	0.77	6E-6		1.37	[1.19-1.58]	Illumina [6220060] (imputed)	N
770	chr10	24319914	24319915	rs143654218	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	10p12.2	KIAA1217	rs143654218-G	0.01	3E-6		0.968	[0.56-1.37] unit increase	Illumina [NR] (imputed)	N
770	chr10	24330804	24330805	rs6482359	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	10p12.2	KIAA1217	rs6482359-?	0.3874	3E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
770	chr10	24357790	24357791	rs75984653	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10p12.2	NR	rs75984653-?	NR	7E-6	(AA)	1.2881	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
771	chr10	24495585	24495586	rs11013962	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	10p12.2	NR	rs11013962-?	NR	3E-7	(earlobes)			Illumina [535076]	N
771	chr10	24499923	24499924	rs2366907	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p12.2	KIAA1217, ARHGAP21	rs2366907-?	NR	9E-68				Illumina [at least 7383741] (imputed)	N
771	chr10	24506438	24506439	rs7096127	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p12.2	KIAA1217, ARHGAP21	rs7096127-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
772	chr10	24518179	24518180	rs7077598	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	10p12.2	KIAA1217, MIR603, ARHGAP21	rs7077598-?	NR	7E-7	(EA)	0.0102	[0.0098-0.0106] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
772	chr10	24534055	24534056	rs10508671	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	10p12.2	KIAA1217, MIR603, ARHGAP21	rs10508671-?	NR	1E-8		0.0102	[0.0098-0.0106] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
772	chr10	24536983	24536984	rs12251962	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	10p12.2	NR	rs12251962-G	NR	4E-12		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
772	chr10	24536983	24536984	rs12251962	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	10p12.2	NR	rs12251962-G	NR	8E-12				Affymetrix, Illumina [NR] (imputed)	N
772	chr10	24563952	24563953	rs11014001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p12.2	Intergenic	rs11014001-A	0.54	1E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr10	24563952	24563953	rs11014001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10p12.2	Intergenic	rs11014001-A	0.54	4E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
772	chr10	24574408	24574409	rs220358	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.2	Intergenic	rs220358-A	0.5191	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr10	24576258	24576259	rs112198986	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		10p12.2	NR	rs112198986-T	0.037	3E-6		1.82	[1.42-2.34]	Illumina [~ 8000000] (imputed)	N
772	chr10	24589906	24589907	rs170205	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	10p12.1	NR	rs170205-G	0.043223	1E-6		1.2271445	[1.13-1.33]	Affymetrix [16309199] (imputed)	N
772	chr10	24600007	24600008	rs12258036	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p12.1	NR	rs12258036-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
772	chr10	24634955	24634956	rs2484873	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	10p12.1	KIAA1217	rs2484873-?	NR	4E-7	(Digit Span Backward)			Illumina [up to 563855]	N
773	chr10	24662208	24662209	rs75495909	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10p12.1	KIAA1217	rs75495909-?	NR	7E-6		3.76		Illumina [6778521] (imputed)	N
773	chr10	24669876	24669877	rs17506606	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10p12.1		rs17506606-G	0.2483	7E-10		0.15474725	[0.1-0.21] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
773	chr10	24669876	24669877	rs17506606	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	10p12.1		rs17506606-G	0.244	2E-8		0.1017801	[0.067-0.137] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
773	chr10	24684810	24684811	rs7075108	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	10p12.1		rs7075108-T	0.1292	6E-6		0.417	[0.2857-0.6087]	Illumina [7778465] (imputed)	N
773	chr10	24684810	24684811	rs7075108	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	10p12.1		rs7075108-G	0.8708	3E-7		0.069	[0.044-0.094] unit decrease	Illumina [7778465] (imputed)	N
773	chr10	24720487	24720488	rs3762086	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10p12.1	KIAA1217	rs3762086-A	0.160610331836497	4E-7		0.0037144	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
773	chr10	24721945	24721946	rs2274831	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	10p12.1	NR	rs2274831-C	0.16	3E-6	(EA)	1.27	[1.15-1.40]	Affymetrix [7469170] (imputed)	N
774	chr10	24833613	24833614	rs1888657	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10p12.1	KIAA1217	rs1888657-T	0.5564	7E-8		0.0349	[0.022-0.048] unit increase	NR [8041861] (imputed)	N
774	chr10	24833704	24833705	rs1888656	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	10p12.1		rs1888656-?	NR	6E-6				Illumina [7401356] (imputed)	N
774	chr10	24851709	24851710	rs1556397	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	10p12.1	KIAA1217	rs1556397-A	0.3311	8E-6		2.923	[NR] unit decrease	Illumina [4827900] (imputed)	N
774	chr10	24854875	24854876	rs2265265	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	10p12.1	KIAA1217, ARHGAP21	rs2265265-A	NR	4E-6		4.604	NR z score increase	Affymetrix [at least 557813] (imputed)	N
774	chr10	24857877	24857878	rs11014163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10p12.1		rs11014163-G	NR	2E-9		0.0146	[0.0099-0.0193] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
774	chr10	24858389	24858390	rs4332427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10p12.1		rs4332427-G	NR	3E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10p12.1		rs4332427-G	0.246892	6E-177		0.074052565	[0.069-0.079] unit increase	Affymetrix [93095623] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p12.1		rs4332427-G	0.246894	6E-26		0.027541613	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p12.1		rs4332427-G	0.246853	2E-17		0.022352034	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10p12.1		rs4332427-G	0.246858	1E-20		0.0248003	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10p12.1		rs4332427-G	0.246887	8E-19		0.022855373	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs4332427-A	0.754506	3E-213				Affymetrix, Illumina [22063850] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10p12.1	NR	rs4332427-A	0.751451	7E-214		0.0687	[0.064-0.073] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs4332427-G	0.217253	8E-25				Affymetrix, Illumina [24246363] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10p12.1	NR	rs4332427-G	0.248163	7E-26		0.022329	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs4332427-G	0.214095	2E-21				Affymetrix, Illumina [20825802] (imputed)	N
774	chr10	24858389	24858390	rs4332427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10p12.1	NR	rs4332427-G	0.247401	8E-23		0.022132	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
774	chr10	24858389	24858390	rs4332427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10p12.1		rs4332427-?	NR	5E-215				NR [~ 8900000] (imputed)	N
774	chr10	24858389	24858390	rs4332427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10p12.1		rs4332427-?	NR	1E-16				NR [~ 8900000] (imputed)	N
774	chr10	24858389	24858390	rs4332427	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10p12.1	NR	rs4332427-G	NR	4E-62		0.0753708	[0.066-0.084] unit increase	Affymetrix [16832071] (imputed)	N
774	chr10	24858389	24858390	rs4332427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10p12.1	intergenic	rs4332427-G	0.2464	9E-70		0.07325614	[0.065-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
774	chr10	24859009	24859010	rs10828674	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10p12.1	NR	rs10828674-G	0.579853	8E-10		0.0410996	[0.027-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
774	chr10	24879784	24879787	rs142336524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10p12.1	ARHGAP21	rs142336524-A	0.203686	2E-11		0.018777497	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
775	chr10	24906142	24906143	rs7913390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p12.1	NR	rs7913390-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
775	chr10	24906142	24906143	rs7913390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p12.1		rs7913390-?	NR	6E-8				NR [~ 8900000] (imputed)	N
775	chr10	24999592	24999593	rs12357257	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	10p12.1	ARHGAP21	rs12357257-?	NR	4E-8	(EA)	1.11		Illumina [12023830] (imputed)	N
775	chr10	25005931	25005932	rs7087801	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p12.1	ARHGAP21	rs7087801-T	0.2979	8E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
775	chr10	25015617	25015618	rs4748969	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	10p12.1	ARHGAP21	rs4748969-A	0.277	2E-8		0.025	[0.017-0.033] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
775	chr10	25029162	25029163	rs6482428	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	10p12.1	intergenic	rs6482428-C	0.9479	1E-7		0.9965	[0.63-1.36] unit decrease	Illumina [at least 4683137] (imputed)	N
775	chr10	25030999	25030999	rs142961996	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 134)	19,670 European ancestry individuals	NA	10p12.1		rs142961996-?	NR	9E-13				NR [9705931] (imputed)	N
775	chr10	25032081	25032082	rs9943389	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.1		rs9943389-T	0.38	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
776	chr10	25042992	25042993	rs10741063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p12.1		rs10741063-G	0.38	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
776	chr10	25042992	25042993	rs10741063	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p12.1	NR	rs10741063-G	0.349	7E-12				NR [9056863] (imputed)	N
776	chr10	25056117	25056118	rs4350272	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10p12.1	NR	rs4350272-G	0.730697	5E-11		0.049259	[0.034-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
776	chr10	25056117	25056118	rs4350272	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10p12.1	ARHGAP21	rs4350272-A	0.269229	4E-9		0.016999	[0.011-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
776	chr10	25058143	25058144	rs10764494	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10p12.1	ARHGAP21	rs10764494-A	0.68	9E-13		0.01	unit increase	Affymetrix [8928767] (imputed)	N
776	chr10	25060886	25060887	rs6482443	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	10p12.1	NR	rs6482443-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
776	chr10	25083571	25083572	rs148025923	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	10p12.1		rs148025923-A	0.0152	3E-7		2.657	[1.82599999999999-3.868]	Affymetrix [7975321] (imputed)	N
776	chr10	25111909	25111910	rs11014249	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	PRTFDC1	rs11014249-C	0.284	3E-6	(Trunk fat mass )	0.04	[NR] kg increase	Illumina [899892]	N
776	chr10	25120167	25120168	rs9418456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10p12.1	PRTFDC1	rs9418456-T	NR	3E-8		0.0160107	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
776	chr10	25123181	25123182	rs4747503	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10p12.1	NR	rs4747503-C	0.618	5E-6	(Caudal Anterior Cingulate)	2.5974467	[1.49-3.71] unit decrease	Affymetrix, Illumina [NR]	N
776	chr10	25160501	25160502	rs11014271	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p12.1	PRTFDC1	rs11014271-C	0.8619	4E-8		0.1104	[0.071-0.15] unit increase	Affymetrix [~ 11900000] (imputed)	N
777	chr10	25166827	25166828	rs7394259	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p12.1	PRTFDC1	rs7394259-G	0.8605	2E-8		0.1122	[0.073-0.152] unit increase	Affymetrix [~ 11900000] (imputed)	N
777	chr10	25175622	25175623	rs12262926	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	10p12.1	PRTFDC1	rs12262926-C	0.2	8E-6		0.2	[0.1-0.3] unit increase	Illumina [4381914] (imputed)	N
777	chr10	25178863	25178864	rs11014285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p12.1		rs11014285-A	NR	1E-20		0.0204	[0.016-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
777	chr10	25178863	25178864	rs11014285	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p12.1	PRTFDC1	rs11014285-A	0.1654	3E-40		0.0342	[0.029-0.039] unit increase	Affymetrix [18391927] (imputed)	N
777	chr10	25178863	25178864	rs11014285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs11014285-?	NR	2E-28				NR [~ 8900000] (imputed)	N
777	chr10	25178863	25178864	rs11014285	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10p12.1	NR	rs11014285-?	NR	3E-12		0.20984	[0.15-0.27] unit increase	Affymetrix [7794483] (imputed)	N
777	chr10	25178863	25178864	rs11014285	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10p12.1	NR	rs11014285-?	NR	1E-9	(female)	0.20049	[0.14-0.26] unit increase	Affymetrix [7794483] (imputed)	N
777	chr10	25180552	25180553	rs796265209	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10p12.1	NR	rs796265209-TC	0.160616	5E-10		0.0582856	[0.04-0.077] unit increase	Affymetrix [17914406] (imputed)	N
777	chr10	25198686	25198687	rs11014291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10p12.1		rs11014291-C	NR	2E-79		0.0454	[0.041-0.05] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
777	chr10	25198686	25198687	rs11014291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10p12.1		rs11014291-C	NR	5E-57		0.0386	[0.034-0.043] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
777	chr10	25198686	25198687	rs11014291	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	10p12.1		rs11014291-T	0.63	1E-48				Affymetrix [10369434] (imputed)	N
777	chr10	25198686	25198687	rs11014291	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p12.1		rs11014291-T	0.63	7E-10				Affymetrix [10369434] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p12.1	PRTFDC1	rs11014291-C	0.369449	1E-14		0.017604899	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs11014291-C	0.288337	1E-25				Affymetrix, Illumina [24588908] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p12.1	NR	rs11014291-C	0.36536	5E-29		0.02133	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs11014291-C	0.31082	2E-56				Affymetrix, Illumina [23472807] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs11014291-C	0.309557	8E-15				Affymetrix, Illumina [19872809] (imputed)	N
777	chr10	25198686	25198687	rs11014291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p12.1	NR	rs11014291-C	0.368417	2E-17		0.017514	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
777	chr10	25198686	25198687	rs11014291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p12.1		rs11014291-?	NR	5E-14				NR [~ 8900000] (imputed)	N
777	chr10	25200590	25200591	rs7905553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10p12.1		rs7905553-?	NR	1E-24				NR [~ 8900000] (imputed)	N
777	chr10	25200805	25200809	rs140884840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p12.1		rs140884840-A	NR	2E-10		0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
777	chr10	25200805	25200809	rs140884840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p12.1	PRTFDC1	rs140884840-A	0.370604	1E-15		0.018731993	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
777	chr10	25200805	25200809	rs140884840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs140884840-A	0.370619	4E-24		0.023692975	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25200805	25200809	rs140884840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10p12.1	PRTFDC1	rs140884840-A	0.3713	7E-13		0.02712682	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25200805	25200809	rs140884840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	10p12.1	PRTFDC1	rs140884840-A	0.3712	4E-10		0.02355059	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25202037	25202038	rs11014296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	10p12.1	PRTFDC1	rs11014296-T	0.3701	8E-163		0.1007907	[0.094-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25202037	25202038	rs11014296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	10p12.1	PRTFDC1	rs11014296-T	0.3702	2E-163		0.1010382	[0.094-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25205057	25205058	rs10828723	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10p12.1	PRTFDC1	rs10828723-C	0.3704	9E-17		0.03090744	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25206411	25206412	rs7896608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10p12.1	NR	rs7896608-G	0.368692	9E-10		0.01301	[0.0089-0.0172] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
777	chr10	25206553	25206554	rs7908585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs7908585-T	0.369595	6E-70		0.040523607	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25207240	25207241	rs151165649	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	10p12.1	NR	rs151165649-A	NR	5E-7	(Hispanic)	9.42	[5.84-13.00] unit increase	Affymetrix [14000000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	1E-44		0.05219243	[0.045-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	3E-32		0.04398175	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	3E-32		0.04406646	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	2E-32		0.04407012	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	3E-39		0.0489623	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3688	8E-48		0.05387181	[0.047-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25211290	25211291	rs12266014	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	10p12.1	PRTFDC1	rs12266014-T	0.3687	2E-32		0.04417048	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25214049	25214050	rs9804265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs9804265-C	0.315243	4E-87				Affymetrix, Illumina [23114412] (imputed)	N
777	chr10	25214049	25214050	rs9804265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10p12.1	NR	rs9804265-C	0.366957	3E-89		0.04002	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
777	chr10	25216805	25216806	rs1033962	25456346	Nievergelt CM	2014-10-30	Psychoneuroendocrinology	Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.	Post-traumatic stress disorder	940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls	313 European ancestry cases, 178 European ancestry trauma-exposed controls	10p12.1	PRTFDC1	rs1033962-A	0.22	2E-9		1.43	[1.31-1.55]	Illumina [21693469] (imputed)	N
777	chr10	25217782	25217783	rs112955547	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10p12.1		rs112955547-G	0.63	2E-53				Affymetrix [10369434] (imputed)	N
777	chr10	25217782	25217783	rs112955547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs112955547-A	0.369067	1E-95		0.04778158	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369137	5E-109		0.05079453	[0.046-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369234	2E-394		0.10250961	[0.098-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369223	8E-390		0.1019057	[0.097-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369184	1E-47		0.03322973	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.36927	1E-308		0.08728552	[0.083-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369143	3E-503		0.11524887	[0.11-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.369134	1E-505		0.115542985	[0.11-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs10828725-T	0.287684	4E-147				Affymetrix, Illumina [24649327] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p12.1	NR	rs10828725-T	0.364782	1E-148		0.049726	[0.046-0.053] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs10828725-T	0.307289	9E-119				Affymetrix, Illumina [23467995] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10p12.1	NR	rs10828725-T	0.367802	4E-121		0.047265	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
777	chr10	25218242	25218243	rs10828725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p12.1	NR	rs10828725-T	0.366094	1E-59		0.032062	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
777	chr10	25218242	25218243	rs10828725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p12.1		rs10828725-?	NR	1E-95				NR [~ 8900000] (imputed)	N
777	chr10	25218242	25218243	rs10828725	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.3704	4E-139		0.09223182	[0.085-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25218242	25218243	rs10828725	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.3704	6E-202		0.1124622	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25218242	25218243	rs10828725	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10p12.1	PRTFDC1	rs10828725-T	0.3704	1E-205		0.1134682	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25220498	25220499	rs7914847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p12.1		rs7914847-A	NR	3E-67		0.0412	[0.036-0.046] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
777	chr10	25220498	25220499	rs7914847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10p12.1		rs7914847-A	NR	2E-35		0.0303	[0.026-0.035] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
777	chr10	25220498	25220499	rs7914847	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10p12.1		rs7914847-G	0.633	1E-32				Affymetrix [10369434] (imputed)	N
777	chr10	25220498	25220499	rs7914847	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10p12.1		rs7914847-G	0.633	6E-20				Affymetrix [10369434] (imputed)	N
777	chr10	25223366	25223367	rs11818463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p12.1		rs11818463-C	NR	5E-18		0.0203	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
777	chr10	25223366	25223367	rs11818463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10p12.1	PRTFDC1	rs11818463-C	0.367051	7E-27		0.024887733	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25223366	25223367	rs11818463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p12.1	PRTFDC1	rs11818463-C	0.367117	6E-36		0.02937026	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr10	25223366	25223367	rs11818463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10p12.1	PRTFDC1	rs11818463-C	0.3679	6E-16		0.02972818	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25224461	25224462	rs11014306	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10p12.1	PRTFDC1	rs11014306-C		4E-6		0.1	[0.06-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
777	chr10	25240083	25240084	rs10828735	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p12.1	PRTFDC1, ARHGAP21, C10orf63	rs10828735-A	0.007	5E-6		6.76	[2.62-17.44]	Illumina [1556551]	N
777	chr10	25244391	25244392	rs274312	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10p12.1	NR	rs274312-?	NR	6E-9	(right caudate)			NR [9227495] (imputed)	N
778	chr10	25300608	25300609	rs4748994	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10p12.1	NR	rs4748994-?	NR	2E-10	(left caudate)			NR [9227495] (imputed)	N
778	chr10	25328866	25328868	rs58221872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10p12.1	NR	rs58221872-T	0.376923	1E-10		0.015502161	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr10	25328866	25328868	rs58221872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10p12.1	NR	rs58221872-T	0.376915	3E-11		0.016004695	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr10	25328866	25328868	rs58221872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10p12.1		rs58221872-T	0.37697	5E-13		0.017326232	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr10	25328866	25328868	rs58221872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10p12.1		rs58221872-T	0.376966	4E-14		0.018118368	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr10	25332460	25332461	rs1352982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs1352982-?	NR	7E-16				NR [~ 8900000] (imputed)	N
778	chr10	25407208	25407209	rs150663673	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	10p12.1	RP11-80K21.3	rs150663673-?	NR	8E-7		4.06	[1.88-8.73]	Illumina [9077347] (imputed)	N
779	chr10	25529752	25529753	rs11014456	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p12.1	GPR158	rs11014456-?		2E-6				Illumina [4322238] (imputed)	N
780	chr10	25591152	25591153	rs59132240	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.1	NR	rs59132240-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
780	chr10	25606004	25606005	rs71495423	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	10p12.1	NR	rs71495423-T	0.003	3E-13	(Unifrac metric)	7.2137723	NR z-score increase	Illumina [5293637] (imputed)	N
780	chr10	25674613	25674614	rs1754257	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	10p12.1	GPR158	rs1754257-A	0.76	2E-7		1.55	NR (AA)	Illumina [15704341] (imputed)	N
780	chr10	25678292	25678293	rs1760726	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	10p12.1	NR	rs1760726-G	0.75	2E-6	(male)	1.44	[NR]	Illumina [5730693] (imputed)	N
781	chr10	25713080	25713081	rs7916840	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes	3,345 European ancestry cases, 2,372 European ancestry controls	4,579 European ancestry cases, 7,777 European ancestry controls, 7,272 Asian cases, 8,775 Asian controls, 465 Chinese ancestry cases, 154 Chinese ancestry controls, 156 Indian ancestry cases, 66 Indian ancestry controls, 202 Malay ancestry cases, 21 Malay ancestry controls	10p12.1	NR	rs7916840-?		6E-7	(EA)	1.27	[1.19-1.37]	Affymetrix, Illumina [up to 9343778] (imputed)	N
781	chr10	25735811	25735812	rs115634195	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	10p12.1	NR	rs115634195-?	NR	2E-6	(AA)	6.25	[NR]	Affymetrix, Illumina [NR] (imputed)	N
781	chr10	25737381	25737382	rs4747521	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	10p12.1	GPR158	rs4747521-C	0.72	7E-6		48.283463	[27.29-69.28] kcal/day decrease	Affymetrix [491265]	N
781	chr10	25770024	25770025	rs72786268	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p12.1	GPR158	rs72786268-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
781	chr10	25773093	25773094	rs1360123	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10p12.1	GPR158	rs1360123-A	NR	9E-9		0.017633423	[0.012-0.024] unit decrease	Affymetrix [NR]	N
781	chr10	25775741	25775742	rs17527895	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	10p12.1		rs17527895-?	NR	2E-8				NR [7857346] (imputed)	N
781	chr10	25786531	25786532	rs4097490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10p12.1		rs4097490-?	NR	2E-9				NR [~ 8900000] (imputed)	N
781	chr10	25803023	25803024	rs4623781	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	10p12.1	GPR158	rs4623781-?	NA	1E-8		1.35	[0.88-1.82] unit increase	Affymetrix [5541230] (imputed)	N
781	chr10	25811434	25811435	rs7086249	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10p12.1	GPR158	rs7086249-C	0.464687745891761	5E-16		0.0043427	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
781	chr10	25819227	25819228	rs7077800	30661054	Schafmayer C	2019-01-19	Gut	Genome-wide association analysis of diverticular disease points towards neuromuscular, connective tissue and epithelial pathomechanisms.	Diverticular disease	31,964 European ancestry cases, 419,135 European ancestry controls	4,611 European ancestry cases, 31,478 European ancestry controls	10p12.1	GPR158	rs7077800-C	0.524	2E-22		1.0752687	[1.06-1.1]	Affymetrix [11977111] (imputed)	N
781	chr10	25819989	25819990	rs10764556	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10764556-T	0.523228	6E-18		0.0751077	[0.057-0.093] increase	Affymetrix [11014269] (imputed)	N
782	chr10	25821317	25821318	rs10508700	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p12.1	GPR158	rs10508700-T	0.5225	5E-9		0.0861	[0.059-0.114] unit increase	Affymetrix [~ 11900000] (imputed)	N
782	chr10	25822359	25822360	rs4749043	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p12.1	GPR158	rs4749043-A	0.6255	5E-11		0.1002	[0.072-0.128] unit increase	Affymetrix [~ 11900000] (imputed)	N
782	chr10	25837238	25837239	rs4145858	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	10p12.1	NR	rs4145858-G	0.3434	3E-6		0.4615	[0.25-0.67] unit increase	Illumina [at least 567677] (imputed)	N
782	chr10	25877650	25877651	rs11014632	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	10p12.1	GPR158	rs11014632-?	NR	5E-8		0.07	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
782	chr10	25880458	25880459	rs17558301	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.1	NR	rs17558301-C	0.961067	7E-6	(IGP36)	1.5855	[0.9-2.28] unit decrease	Illumina [~ 2500000] (imputed)	N
782	chr10	25891243	25891244	rs7909167	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	10p12.1	GPR158	rs7909167-?	NR	6E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
782	chr10	25896014	25896016	rs60930737	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA			rs60930737-?	NR	2E-6	(ser_lg_lmp)	2.09		Illumina [11595112] (imputed)	N
782	chr10	25918878	25918879	rs12775535	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p12.1	GPR158	rs12775535-?		4E-9	(AA)			Illumina [NR]	N
782	chr10	25926871	25926872	rs11014648	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p12.1	NR	rs11014648-?		8E-6				Illumina [4322238] (imputed)	N
783	chr10	25982162	25982163	rs16926263	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	10p12.1	LINC00836	rs16926263-T	0.9782	4E-6	(male)	0.4361	[0.25-0.62] unit decrease	NR [NR] (imputed)	N
783	chr10	25983373	25983374	rs7895886	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	10p12.1		rs7895886-A	0.0216	8E-6	(male)	0.4237	[0.24-0.61] unit increase	NR [NR] (imputed)	N
783	chr10	26002247	26002248	rs2504183	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p12.1	NR	rs2504183-G	0.71933817201426	7E-6	(IGP25)	0.1943	[0.11-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
783	chr10	26017912	26017913	rs2505447	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	10p12.1	LINC00836	rs2505447-A	0.769	1E-15		0.22	[0.17-0.28] unit increase	Affymetrix [339439]	N
783	chr10	26048121	26048122	rs745513740	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10p12.1	LINC00836, LOC101929073	rs745513740-?		3E-8		3.3663	[2.18-4.55] unit decrease	Illumina [31500000] (imputed)	N
783	chr10	26082032	26082033	rs117548447	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10p12.1	NR	rs117548447-?	NR	2E-7		2809.67	NR unit decrease	Illumina [2379855]	N
784	chr10	26135838	26135839	rs35450555	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	10p12.1	LOC101929073	rs35450555-A	0.022	6E-6		0.35	[0.20-0.50] unit increase	Affymetrix [7435577] (imputed)	N
784	chr10	26162765	26162766	rs4749080	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	MYO3A	rs4749080-G	0.268	4E-7	(IL6 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
785	chr10	26226917	26226918	rs946688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10p12.1		rs946688-G	NR	6E-19		0.0405	[0.032-0.049] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
785	chr10	26255551	26255552	rs72789937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10p12.1	NR	rs72789937-A	NR	7E-17		0.0401	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
785	chr10	26287291	26287292	rs774735222	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10p12.1	MYO3A	rs774735222-A	0.0013	5E-6		2.6345	[1.5-3.77] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr10	26294827	26294828	rs16926523	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	10p12.1	MYO3A	rs16926523-A		4E-6		9.55	[NR] ms increase	Illumina [> 930000]	N
785	chr10	26337140	26337141	rs180789526	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	10p12.1	MYO3A	rs180789526-G	NR	8E-6		1.02231	[0.57-1.47] unit decrease	Illumina [at least 950000] (imputed)	N
786	chr10	26433365	26433366	rs2096176	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	MYO3A	rs2096176-A	0.33	5E-6	(Cortisol )	0.02	[NR] ng/mL increase	Illumina [899892]	N
787	chr10	26483265	26483266	rs79861802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10p12.1	NR	rs79861802-C	NR	2E-10		0.0417	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
787	chr10	26484153	26484154	rs12764197	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	MYO3A	rs12764197-G	0.304	6E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
787	chr10	26494738	26494739	rs140566845	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	10p12.1	MYO3A	rs140566845-A	0.931	4E-6	(Stability score)	1.2545	[0.72-1.79] unit increase	Affymetrix [8042262] (imputed)	N
787	chr10	26505821	26505822	rs2839671	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	10p12.1	GAD2	rs2839671-A	0.1735	5E-7		0.009	[0.0057-0.0123] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
787	chr10	26505821	26505822	rs2839671	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	10p12.1	GAD2	rs2839671-A	0.1716	8E-14		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
787	chr10	26524929	26524930	rs10828963	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (joint pain)	251 Japanese ancestry female cases, 5,483 Japanese ancestry female controls	277 Japanese ancestry female cases, 5,337 Japanese ancestry female controls	10p12.1	NR	rs10828963-G	0.484979044	4E-6		0.29585403	[0.17-0.42] unit decrease	Affymetrix [536506]	N
787	chr10	26538236	26538237	rs574364675	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	10p12.1	GAD2	rs574364675-T	0.0014	6E-6		1.2199	[0.69-1.75] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
787	chr10	26545187	26545188	rs12360108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10p12.1		rs12360108-G	NR	1E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
787	chr10	26594388	26594388	rs148314348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10p12.1		rs148314348-AT	NR	2E-11		0.0217	[0.015-0.028] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
788	chr10	26627380	26627381	rs192665745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10p12.1	Intergenic	rs192665745-G	1.0	4E-6	(AA)	0.672	unit increase	Illumina [NR] (imputed)	N
788	chr10	26697293	26697294	rs945294	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs945294-?	NR	1E-12				Affymetrix [NR]	N
788	chr10	26711898	26711899	rs2992327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p12.1		rs2992327-T	0.273309	5E-10		0.0154863	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr10	26712072	26712073	rs11015098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10p12.1		rs11015098-A	0.497	2E-10				Affymetrix [10369434] (imputed)	N
788	chr10	26712072	26712073	rs11015098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs11015098-G	0.442767	3E-28				Affymetrix, Illumina [23472807] (imputed)	N
788	chr10	26712072	26712073	rs11015098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p12.1	NR	rs11015098-G	0.501395	5E-29		0.021336	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
788	chr10	26712482	26712483	rs7901056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs7901056-G	0.343837	4E-16				Affymetrix, Illumina [24649327] (imputed)	N
788	chr10	26712482	26712483	rs7901056	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10p12.1	intergenic	rs7901056-G	0.3972	6E-10		0.02278787	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26723513	26723514	rs12783726	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10p12.1	APBB1IP	rs12783726-A	0.393437	2E-17		0.019431634	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr10	26723513	26723514	rs12783726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p12.1		rs12783726-?	NR	7E-11				NR [~ 8900000] (imputed)	N
788	chr10	26727237	26727238	rs1335540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p12.1	NR	rs1335540-A	0.599807	3E-18		0.016373	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
788	chr10	26727237	26727238	rs1335540	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10p12.1	APBB1IP	rs1335540-A	0.597	6E-12		0.02490199	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26727453	26727454	rs2992333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10p12.1	APBB1IP	rs2992333-A	0.59835	4E-16		0.018573632	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26727453	26727454	rs2992333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs2992333-A	0.640948	2E-61				Affymetrix, Illumina [19872809] (imputed)	N
788	chr10	26727453	26727454	rs2992333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p12.1	NR	rs2992333-A	0.598657	1E-63		0.034153	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
788	chr10	26727635	26727636	rs4749125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10p12.1	APBB1IP	rs4749125-C	0.598197	2E-12		0.015922941	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26727681	26727682	rs4749126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10p12.1	APBB1IP	rs4749126-A	0.598236	2E-12		0.016034065	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26728588	26728588	rs9299823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10p12.1		rs9299823-AGC	NR	5E-14		0.0171	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
788	chr10	26734516	26734517	rs11591540	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10p12.1		rs11591540-G	0.598	9E-12				Affymetrix [10369434] (imputed)	N
788	chr10	26734517	26734518	rs11595895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p12.1	APBB1IP	rs11595895-A	0.403352	4E-21		0.021256264	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26734517	26734518	rs11595895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10p12.1	APBB1IP	rs11595895-A	0.403318	3E-17		0.019187644	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26734517	26734518	rs11595895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10p12.1	APBB1IP	rs11595895-A	0.403319	3E-26		0.024059413	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26734517	26734518	rs11595895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs11595895-A	0.348415	3E-26				Affymetrix, Illumina [19905671] (imputed)	N
788	chr10	26734517	26734518	rs11595895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10p12.1	NR	rs11595895-A	0.402655	1E-29		0.02368	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
788	chr10	26734586	26734587	rs2992257	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	10p12.1	APBB1IP	rs2992257-T	NR	3E-7	(AA)	8.63	[-2.13040-19.39040] unit increase	Affymetrix [~ 2300000] (imputed)	N
788	chr10	26734986	26734987	rs7098710	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p12.1		rs7098710-C	0.598	6E-25				Affymetrix [10369434] (imputed)	N
788	chr10	26734986	26734987	rs7098710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p12.1	APBB1IP	rs7098710-T	0.401084	2E-14		0.020993574	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26734986	26734987	rs7098710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p12.1	APBB1IP	rs7098710-T	0.401087	3E-17		0.023237051	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
788	chr10	26734986	26734987	rs7098710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p12.1		rs7098710-?	NR	3E-53				NR [~ 8900000] (imputed)	N
788	chr10	26735016	26735016	rs35105391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p12.1	APBB1IP	rs35105391-TG	0.327521	9E-10		0.01754457	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr10	26735016	26735016	rs35105391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p12.1	APBB1IP	rs35105391-TG	0.327499	1E-13		0.0211897	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
788	chr10	26736148	26736148	rs11405231	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p12.1		rs11405231-CA	NR	2E-33		0.0211	[0.018-0.024] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
788	chr10	26736239	26736240	rs3006802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p12.1	APBB1IP	rs3006802-C	0.597	1E-25		0.03802302	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26736239	26736240	rs3006802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10p12.1	APBB1IP	rs3006802-C	0.597	5E-19		0.03255365	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26736239	26736240	rs3006802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10p12.1	APBB1IP	rs3006802-C	0.597	2E-17		0.0309317	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26736239	26736240	rs3006802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10p12.1	APBB1IP	rs3006802-C	0.597	2E-17		0.03091392	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26736239	26736240	rs3006802	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p12.1	APBB1IP	rs3006802-C	0.5969	1E-22		0.03567762	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
788	chr10	26737137	26737137	rs35189173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p12.1	APBB1IP	rs35189173-AT	0.328329	5E-13		0.01696109	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
789	chr10	26740255	26740256	rs12770943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10p12.1		rs12770943-C	NR	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
789	chr10	26741173	26741174	rs2992262	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	10p12.1	APBB1IP	rs2992262-T	0.6074	3E-12		0.02510943	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
789	chr10	26774693	26774694	rs786870	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	10p12.1	APBB1IP	rs786870-?	NR	5E-7	(MCP1-TNF-a pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
789	chr10	26792143	26792144	rs113442503	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	10p12.1		rs113442503-?	NR	1E-10		0.0899607	[0.062-0.118] unit increase	NR [9800000] (imputed)	N
789	chr10	26792143	26792144	rs113442503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p12.1	APBB1IP	rs113442503-A	0.00508399999999998	7E-10		0.09568652	[0.065-0.126] unit increase	Affymetrix [93095623] (imputed)	N
789	chr10	26808362	26808363	rs188981478	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	10p12.1	NR	rs188981478-T	0.01	6E-6		1.76	[1.51-2.01]	Illumina [8468885] (imputed)	N
790	chr10	26906565	26906566	rs7913896	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	10p12.1	LINC00264	rs7913896-?	NR	2E-6	(PS matching analysis)	3.21	NR	Affymetrix [345072]	N
791	chr10	27011111	27011112	rs1564271	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	10p12.1	PDSS1	rs1564271-?	NR	9E-6		1.62		Illumina [636555]	N
791	chr10	27021627	27021628	rs12256438	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs12256438-?	NR	2E-8				Affymetrix [NR]	N
791	chr10	27034223	27034224	rs11015260	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs11015260-?	NR	5E-10				Affymetrix [NR]	N
791	chr10	27044751	27044752	rs17747622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.1		rs17747622-T	0.05	2E-14		7.67	z score increase	Affymetrix [9061022] (imputed)	N
791	chr10	27044751	27044752	rs17747622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p12.1		rs17747622-T	0.05	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
791	chr10	27044751	27044752	rs17747622	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p12.1		rs17747622-C	0.939	4E-9		0.016	[0.01-0.022] unit increase	NR [NR] (imputed)	N
791	chr10	27103794	27103795	rs762684141	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10p12.1		rs762684141-T	NR	6E-6		1.7591		Affymetrix, Illumina [62056310] (imputed)	N
792	chr10	27179595	27179596	rs7911117	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	10p12.1	intergenic	rs7911117-T	0.871	2E-8		1.14	[1.10-1.19]	Illumina [9578670] (imputed)	N
792	chr10	27258669	27258670	rs7081476	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	10p12.1	NR	rs7081476-?	NR	5E-6				Affymetrix [NR]	N
792	chr10	27258669	27258670	rs7081476	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	10p12.1	NR	rs7081476-?	NR	2E-8				Affymetrix [NR]	N
793	chr10	27302771	27302772	rs1411283	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	10p12.1	ANKRD26	rs1411283-?		9E-6	(endpoint 1, dominant)	2.0408163	[NR]	Illumina [> 750000]	N
793	chr10	27317839	27317840	rs10829163	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	10p12.1	ANKRD26	rs10829163-T	0.1616	2E-12		0.017	[0.012-0.022] unit increase	Illumina [246328]	N
793	chr10	27357469	27357470	rs112505971	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	10p12.1	ANKRD26	rs112505971-?	NR	2E-8				Illumina [20594536] (imputed)	N
793	chr10	27360022	27360023	rs34452993	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p12.1	NR	rs34452993-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
793	chr10	27369161	27369162	rs7918232	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.1	NR	rs7918232-C	0.8143	8E-6	(EA)	0.036	[0.02-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
793	chr10	27380000	27380000	rs398045939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p12.1		rs398045939-CGG	NR	3E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
793	chr10	27384106	27384107	rs10764671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p12.1		rs10764671-C	NR	1E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
793	chr10	27384106	27384107	rs10764671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p12.1		rs10764671-?	NR	2E-8				NR [~ 8900000] (imputed)	N
793	chr10	27392540	27392541	rs10764672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p12.1		rs10764672-A	NR	5E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
793	chr10	27392540	27392541	rs10764672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p12.1	ANKRD26	rs10764672-A	0.808606	3E-14		0.021752475	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
794	chr10	27397453	27397454	rs11015535	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10p12.1	YME1L1	rs11015535-T	0.093	2E-8		0.0404	[0.026-0.055] unit increase	Illumina [~ 250000] (imputed)	N
794	chr10	27401055	27401056	rs11015538	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs11015538-?	NR	4E-6				Affymetrix [NR]	N
794	chr10	27437128	27437128	rs147818229	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	10p12.1	YME1L1	rs147818229-?	NR	3E-6				Illumina [5729117] (imputed)	N
794	chr10	27445204	27445205	rs3758407	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	10p12.1	MASTL	rs3758407-C	0.05491298	2E-6		1.2178137	[1.123656383-1.319860939]	Illumina [10439017] (imputed)	N
794	chr10	27473234	27473235	rs788219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p12.1	NR	rs788219-A	0.139026	8E-17		0.022101	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
794	chr10	27476947	27476948	rs788210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p12.1	MASTL	rs788210-C	0.181654	3E-21		0.027715757	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr10	27476947	27476948	rs788210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs788210-C	0.146401	4E-16				Affymetrix, Illumina [24588908] (imputed)	N
794	chr10	27476947	27476948	rs788210	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10p12.1	MASTL	rs788210-C	0.1826	1E-10		0.03035086	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
794	chr10	27478713	27478715	rs71386921	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p12.1	NR	rs71386921-A	0.7961	3E-6	(EA)	0.0366	[0.021-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
794	chr10	27518380	27518381	rs35209475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p12.1		rs35209475-?	NR	1E-9				NR [~ 8900000] (imputed)	N
795	chr10	27527707	27527717	rs146831244	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	10p12.1	NR	rs146831244-T	0.7658	5E-7		1.8706	[1.14-2.6] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr10	27669196	27669197	rs11814298	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	10p12.1	LRRC37A6P, PTCHD3	rs11814298-A	0.05	7E-6		0.059	[0.034-0.084] unit decrease	Illumina [7358575] (imputed)	N
796	chr10	27693304	27693305	rs1334893	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10p12.1	PTCHD3	rs1334893-A	0.9313	5E-6		0.005377	[0.0031-0.0077] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr10	27707511	27707512	rs12783768	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p12.1	NR	rs12783768-?		3E-6				Illumina [4322238] (imputed)	N
796	chr10	27708028	27708029	rs143543475	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	10p12.1	PTCHD3	rs143543475-?	0.01	4E-7		11.0	[NR]	Affymetrix [4893794] (imputed)	N
796	chr10	27710532	27710533	rs139905806	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	10p12.1	PTCHD3, RAB18	rs139905806-?		2E-6		1.2345679	[1.14-1.37]	Illumina [5352724] (imputed)	N
796	chr10	27740958	27740959	rs660498	27142222	White MJ	2016-05-03	Immunogenetics	Novel genetic risk factors for asthma in African American children: Precision Medicine and the SAGE II Study.	Asthma (childhood onset)	812 African American child cases, 415 African American child controls	NA	10p12.1	PTCHD3	rs660498-T	0.46	2E-7		1.62	[1.35-1.95]	Affymetrix [797128]	N
796	chr10	27768082	27768083	rs661882	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs661882-?	NR	4E-28				Affymetrix [NR]	N
797	chr10	27863888	27863889	rs766239421	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10p12.1	RAB18	rs766239421-A	0.0015	4E-6		0.7848	[0.45-1.12] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr10	27873024	27873025	rs10829282	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10p12.1	RAB18	rs10829282-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
797	chr10	27875005	27875006	rs1494209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10p12.1	RAB18	rs1494209-G	NR	1E-8		0.0161919	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
797	chr10	27875005	27875006	rs1494209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs1494209-?	NR	6E-45				NR [~ 8900000] (imputed)	N
797	chr10	27876396	27876397	rs7074558	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs7074558-?	NR	6E-44		0.0279937	[0.024-0.032] unit increase	Affymetrix [20259828] (imputed)	N
797	chr10	27876396	27876397	rs7074558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	RAB18	rs7074558-C	0.489989	1E-8	(men)	0.0277847	[0.018-0.038] unit increase	NR [17166351] (imputed)	N
797	chr10	27876396	27876397	rs7074558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	RAB18	rs7074558-C	0.489919	4E-15		0.0259016	[0.019-0.033] unit increase	NR [17166351] (imputed)	N
797	chr10	27876396	27876397	rs7074558	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	RAB18	rs7074558-C	0.489858	4E-7	(women)	0.0223074	[0.013-0.031] unit increase	NR [17166351] (imputed)	N
797	chr10	27880189	27880190	rs11015890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p12.1	NR	rs11015890-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
797	chr10	27881307	27881308	rs4272700	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		10p12.1	NR	rs4272700-A	0.306727	4E-6		1.06999	[1.03875-1.10216]	Affymetrix [16499239] (imputed)	N
797	chr10	27882824	27882825	rs7072380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10p12.1	RAB18	rs7072380-G	NR	7E-9		0.0164411	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
797	chr10	27882824	27882825	rs7072380	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	RAB18	rs7072380-G	0.49409	1E-41		0.0257026	[0.022-0.029] unit increase	NR [13737936] (imputed)	N
797	chr10	27884497	27884498	rs79685388	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	10p12.1	NR	rs79685388-?	NR	3E-6		0.1301	[0.075-0.185] unit decrease	Illumina [at least 560000] (imputed)	N
797	chr10	27888852	27888853	rs10764717	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs10764717-?	NR	1E-44		0.028236	[0.024-0.032] unit increase	Affymetrix [20259828] (imputed)	N
797	chr10	27890830	27890831	rs7069985	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	10p12.1	intergenic	rs7069985-G	0.12	7E-6	(male)	70.1	[39.72-100.48] unit increase	Illumina [6380737] (imputed)	N
797	chr10	27900881	27900882	rs2808290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p12.1		rs2808290-T	NR	3E-26		0.0145	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
797	chr10	27900881	27900882	rs2808290	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10p12.1	MKX	rs2808290-C	NR	2E-13		0.022652	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
797	chr10	27900881	27900882	rs2808290	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p12.1	intergenic	rs2808290-T	0.5029	2E-21		0.018	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
797	chr10	27900881	27900882	rs2808290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs2808290-?	NR	7E-30				NR [~ 8900000] (imputed)	N
797	chr10	27900881	27900882	rs2808290	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	10p12.1	NR	rs2808290-?	NR	7E-7		0.1165	[0.071-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
797	chr10	27900881	27900882	rs2808290	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10p12.1	RAB18, MKX	rs2808290-C	0.51	5E-16		1.07	[1.07-1.08]	Illumina [at least 560000] (imputed)	N
797	chr10	27900881	27900882	rs2808290	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p12.1	MKX	rs2808290-T	0.4985	2E-6		0.0308	[0.018-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr10	27900881	27900882	rs2808290	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10p12.1	RAB18, MKX	rs2808290-?	NR	5E-16		1.0752687	[1.06-1.09]	Illumina [13754664] (imputed)	N
797	chr10	27904320	27904321	rs1494204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p12.1	NR	rs1494204-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
797	chr10	27904320	27904321	rs1494204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p12.1		rs1494204-?	NR	4E-12				NR [~ 8900000] (imputed)	N
797	chr10	27904320	27904321	rs1494204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p12.1	NA	rs1494204-T	0.419	4E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
797	chr10	27904366	27904367	rs1494205	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	10p12.1	NR	rs1494205-T	0.5809	1E-15		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
797	chr10	27910781	27910782	rs2642306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10p12.1	MKX	rs2642306-A	NR	4E-11		0.0210725	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
797	chr10	27910830	27910831	rs61843417	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10p12.1	NR	rs61843417-A	0.0940534	2E-8		0.0645963	[0.041-0.088] unit decrease	Affymetrix [17914406] (imputed)	N
797	chr10	27916152	27916153	rs11015918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10p12.1		rs11015918-A	0.348922	6E-11		0.0137909	[0.0097-0.0179] unit decrease	Illumina [13479295] (imputed)	N
798	chr10	27931269	27931270	rs2808266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p12.1		rs2808266-G	NR	1E-8		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
798	chr10	27936561	27936562	rs2642278	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	10p12.1		rs2642278-?	NR	1E-8		0.05	[0.032-0.068] unit increase	Affymetrix [9906178] (imputed)	N
798	chr10	27944544	27944545	rs59596477	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p12.1	RAB18, MKX	rs59596477-?	NR	2E-12		0.023837548	[0.017-0.03] unit decrease	Illumina [27896057] (imputed)	N
798	chr10	27984525	27984526	rs539730823	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	10p12.1	MKX	rs539730823-A	0.9968	3E-6		0.701	[0.41-1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
798	chr10	27992341	27992342	rs56113471	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p12.1		rs56113471-A	0.19	1E-11		6.77	z score increase	Affymetrix [9061022] (imputed)	N
798	chr10	28006810	28006811	rs2637294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs2637294-?	NR	7E-16				NR [~ 8900000] (imputed)	N
798	chr10	28010188	28010189	rs577267998	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs577267998-?	NR	1E-17		0.0323873	[0.024-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
798	chr10	28011227	28011228	rs75587692	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	MKX	rs75587692-C	0.986017	1E-13		0.059258	[0.044-0.075] unit increase	NR [13737936] (imputed)	N
798	chr10	28011227	28011228	rs75587692	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs75587692-?	NR	1E-10		0.0559712	[0.038-0.073] unit increase	Affymetrix [20259828] (imputed)	N
798	chr10	28017571	28017572	rs7358151	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p12.1	MKX, RAB18, ARMC4	rs7358151-G	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
798	chr10	28025770	28025771	rs10508727	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10p12.1	MKX	rs10508727-?		1E-10	(AA)			Illumina [NR]	N
798	chr10	28040822	28040823	rs2637317	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	MKX-AS1	rs2637317-G	0.0759669	2E-9		0.0209366	[0.014-0.028] unit decrease	NR [13737936] (imputed)	N
799	chr10	28050839	28050840	rs11006706	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to oxaliplatin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10p12.1		rs11006706-?	NR	1E-9				Illumina [1510701]	N
799	chr10	28064919	28064920	rs113512743	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	10p12.1	MKX, ARMC4	rs113512743-?	0.03799999999999992	5E-6		1.2755691	[1.13-1.44]	Affymetrix, Illumina [7701827] (imputed)	N
799	chr10	28085824	28085825	rs10826348	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to oxaliplatin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10p12.1		rs10826348-?	NR	2E-8				Illumina [1510701]	N
799	chr10	28089341	28089342	rs1112962	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to oxaliplatin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10p12.1		rs1112962-?	NR	6E-7				Illumina [1510701]	N
799	chr10	28094418	28094419	rs2492906	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	10p12.1	ARMC4	rs2492906-?	0.79	1E-8	(conditional on Round 1 SNPs)	0.037	unit increase	Affymetrix [10109774] (imputed)	N
799	chr10	28147607	28147608	rs76828681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs76828681-?	NR	3E-11				NR [~ 8900000] (imputed)	N
799	chr10	28150934	28150935	rs11006747	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	ARMC4	rs11006747-A	0.383	8E-6	(Total cysteine )	0.02	[NR] umol/L increase	Illumina [899892]	N
799	chr10	28160835	28160836	rs11006752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs11006752-?	NR	3E-18				NR [~ 8900000] (imputed)	N
800	chr10	28197525	28197526	rs12779675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p12.1		rs12779675-?	NR	2E-14				NR [~ 8900000] (imputed)	N
800	chr10	28197525	28197526	rs12779675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p12.1		rs12779675-?	NR	1E-12				NR [~ 8900000] (imputed)	N
800	chr10	28212864	28212865	rs9417567	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	ARMC4	rs9417567-C	0.830745	8E-10		0.015673	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
800	chr10	28228864	28228865	rs7893462	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10p12.1		rs7893462-A	0.4726	6E-13		0.15875846	[0.12-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
800	chr10	28228864	28228865	rs7893462	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	10p12.1		rs7893462-A	0.4749	1E-8		5.6705	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
800	chr10	28228864	28228865	rs7893462	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10p12.1		rs7893462-A	0.4728	2E-9		0.082209714	[0.055-0.109] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
800	chr10	28233468	28233469	rs3802517	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	10p12.1	ARMC4	rs3802517-T	0.5382	5E-17		0.2527	[0.19-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
800	chr10	28247440	28247441	rs200216460	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	10p12.1	NR	rs200216460-?		5E-6		3.62	[NR]	Illumina [NR] (imputed)	N
800	chr10	28252638	28252639	rs1962094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10p12.1		rs1962094-?	NR	6E-8				NR [~ 8900000] (imputed)	N
800	chr10	28277668	28277669	rs16928444	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	10p12.1	NR	rs16928444-T	0.0541	4E-6		0.0385	[0.022-0.055] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
801	chr10	28323943	28323944	rs72801842	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.1	NR	rs72801842-T	0.02091	2E-10	(AKR1C2)	0.7901	NR unit increase	Illumina [1671387] (imputed)	N
801	chr10	28329683	28329684	rs12240999	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs12240999-?	NR	1E-9				Affymetrix [NR]	N
801	chr10	28336695	28336696	rs7920436	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	10p12.1	RP11-218D6.4	rs7920436-?	NR	2E-6				Illumina [5729117] (imputed)	N
801	chr10	28356796	28356797	rs11006832	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs11006832-?	NR	2E-10		0.0232101	[0.015-0.031] unit increase	Affymetrix [20259828] (imputed)	N
801	chr10	28356916	28356917	rs35891448	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MPP7	rs35891448-?	NR	9E-14		2.14059	[NR] unit decrease	Affymetrix [NR] (imputed)	N
801	chr10	28382932	28382933	rs927675	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Hippocampal volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	10p12.1	MPP7	rs927675-?	NR	2E-6		2.0E-4	[NR] unit increase	Illumina [478011]	N
801	chr10	28388149	28388150	rs10763642	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	MPP7	rs10763642-A	0.426	7E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
801	chr10	28405410	28405411	rs7916852	27001270	Vishal M	2016-03-22	BMC Med Genomics	Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma.	Glaucoma (primary open-angle)	347 Indian ancestry cases, 354 Indian ancestry controls	319 Indian ancestry cases, 297 Indian ancestry controls	10p12.1	MPP7	rs7916852-C	0.43	6E-7		1.54	[1.25-1.9]	Illumina [521873]	N
801	chr10	28435914	28435915	rs12241932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs12241932-?	NR	6E-44		0.0332937	[0.028-0.038] unit increase	Affymetrix [20259828] (imputed)	N
801	chr10	28435914	28435915	rs12241932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	MPP7	rs12241932-T	0.782704	2E-9	(men)	0.0385407	[0.026-0.051] unit increase	NR [17166351] (imputed)	N
801	chr10	28435914	28435915	rs12241932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	MPP7	rs12241932-T	0.781358	5E-16		0.033593	[0.026-0.042] unit increase	NR [17166351] (imputed)	N
801	chr10	28435914	28435915	rs12241932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p12.1	MPP7	rs12241932-T	0.780182	7E-7	(women)	0.0275415	[0.017-0.039] unit increase	NR [17166351] (imputed)	N
801	chr10	28440311	28440312	rs4747616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs4747616-?	NR	1E-41				NR [~ 8900000] (imputed)	N
802	chr10	28442840	28442841	rs9299597	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	MPP7	rs9299597-G	0.8507	1E-31		0.0308392	[0.026-0.036] unit increase	NR [13737936] (imputed)	N
802	chr10	28463949	28463950	rs1937810	33606446	Kim SK	2021-02-18	Med Sci Sports Exerc	Identification of Three Loci Associated with Achilles Tendon Injury Risk from a Genome-wide Association Study.	Achilles tendon injury	12,354 European ancestry cases, 483,080 European ancestry controls	NA	10p12.1	MPP7	rs1937810-C	0.14	3E-9		1.11	[NR]	Affymetrix [10183576] (imputed)	N
802	chr10	28463949	28463950	rs1937810	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Achilles tendinopathy	4,258 European ancestry cases, 413 Latin-American cases, 268 East Asian ancestry cases, 192 African American cases, 17 South East Asian ancestry cases, 79,006 European ancestry controls, 8,147 Latin-American controls, 7,250 East Asian ancestry controls, 2,969 African American controls, 459 South East Asian ancestry controls		10p12.1	NR	rs193781-C	NR	2E-7		1.16	[1.11-1.21]	Affymetrix [10551193] (imputed)	N
802	chr10	28478491	28478492	rs11006914	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	10p12.1	MPP7	rs11006914-T	0.195525	1E-9		0.0575	[0.039-0.076] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
802	chr10	28479941	28479942	rs3905706	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	10p12.1	MPP7	rs3905706-T	0.22	3E-6		0.08	unit increase	Illumina [~ 2500000] (imputed)	N
802	chr10	28479941	28479942	rs3905706	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	10p12.1	MPP7	rs3905706-?	NR	8E-6	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
802	chr10	28479941	28479942	rs3905706	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10p12.1	MPP7	rs3905706-T	0.22	2E-16		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
802	chr10	28504186	28504187	rs6481512	33606446	Kim SK	2021-02-18	Med Sci Sports Exerc	Identification of Three Loci Associated with Achilles Tendon Injury Risk from a Genome-wide Association Study.	Achilles tendon injury	12,354 European ancestry cases, 483,080 European ancestry controls	NA	10p12.1	MPP7	rs6481512-C	0.14	2E-8		0.9	[NR]	Affymetrix [10183576] (imputed)	N
802	chr10	28504943	28504944	rs11006923	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	10p12.1	MPP7	rs11006923-?	0.95	9E-6		1.5873016	[NR]	Illumina [1847262] (imputed)	N
802	chr10	28511244	28511245	rs7070175	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	MPP7	rs7070175-T	0.861068	2E-20		0.0252373	[0.02-0.031] unit decrease	NR [13737936] (imputed)	N
802	chr10	28518817	28518817	rs765093878	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs765093878-?	NR	8E-22		0.0310881	[0.024-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
803	chr10	28590382	28590383	rs115882204	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10p12.1	intergenic	rs115882204-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
803	chr10	28602642	28602643	rs1762188	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs1762188-?	NR	6E-13		0.0156662	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
803	chr10	28609689	28609690	rs786391	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10p12.1	MPP7, LOC105376468	rs786391-?	NR	2E-9		0.472	[0.32-0.63] unit decrease	Affymetrix [11100000] (imputed)	N
803	chr10	28617634	28617635	rs1148186	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10p12.1	intergenic	rs1148186-?	NR	7E-6	(FEV1/FVC decline in asthmatics)	0.2193	[0.12-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
803	chr10	28620142	28620143	rs1249269	33606446	Kim SK	2021-02-18	Med Sci Sports Exerc	Identification of Three Loci Associated with Achilles Tendon Injury Risk from a Genome-wide Association Study.	Achilles tendon injury	12,354 European ancestry cases, 483,080 European ancestry controls	NA	10p12.1	MPP7	rs1249269-T	0.43	1E-10		1.09	[NR]	Affymetrix [10183576] (imputed)	N
803	chr10	28633497	28633498	rs1776128	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	10p12.1	NR	rs1776128-?	NR	2E-6		0.1742	[0.1-0.25] unit increase	Illumina [at least 560000] (imputed)	N
803	chr10	28637659	28637660	rs7900823	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	10p12.1	intergenic	rs7900823-?	NR	2E-6		1.7850769	[1.41-2.27]	Illumina [1024001]	N
803	chr10	28650915	28650923	rs150161667	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	10p12.1	NR	rs150161667-A	0.2708	2E-6		0.1643	[0.097-0.232] unit decrease	Illumina [10677593] (imputed)	N
803	chr10	28655647	28655648	rs2797593	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p12.1	MPP7	rs2797593-C	0.35875	9E-6	(MPP7, 12732_13_3)	0.12123852	[0.068-0.175] unit increase	Illumina [> 1000000] (imputed)	N
803	chr10	28681537	28681538	rs12219062	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10p12.1	MPP7	rs12219062-T	0.0323922490287508	9E-6		0.0070008	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
803	chr10	28684330	28684331	rs11813260	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10p12.1	NR	rs11813260-?	NR	2E-6		0.0837	[0.049-0.118] unit increase	Affymetrix [805426] (imputed)	N
803	chr10	28704212	28704213	rs10733990	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	10p12.1	Intergenic	rs10733990-A	0.3053	1E-6		0.5857	[0.35-0.82] unit increase	Illumina [500508]	N
804	chr10	28709604	28709605	rs10826468	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	10p12.1	RPSAP10	rs10826468-T	0.59	5E-6		1.2987013		Affymetrix [at least 730985] (imputed)	N
804	chr10	28752105	28752106	rs2153299	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10p12.1	RPSAP10	rs2153299-G	0.463	3E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
804	chr10	28755261	28755262	rs117063229	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	LOC105376469	rs117063229-T		7E-6		3.5443	[1.99-5.1] unit increase	Illumina [7576458] (imputed)	N
804	chr10	28757163	28757164	rs2616617	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10p12.1	RP11-351M16.3	rs2616617-T	0.801	8E-6		0.0379	[0.021-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
804	chr10	28765798	28765799	rs12572639	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	10p12.1	NR	rs12572639-?	NR	3E-6	(Richness)	22.7267	[13.25-32.21] unit decrease	Illumina [5293637] (imputed)	N
804	chr10	28768349	28768350	rs11818760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs11818760-?	NR	2E-8				NR [~ 8900000] (imputed)	N
804	chr10	28773477	28773478	rs1934363	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10p12.1		rs1934363-C	0.94	3E-10	(CCOC)	11.0	[5.3-24]	Illumina [11595112] (imputed)	N
804	chr10	28775485	28775486	rs55738232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p12.1		rs55738232-T	0.2301	4E-8	(conditional-joint)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
804	chr10	28780292	28780293	rs2807743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10p12.1		rs2807743-T	NR	1E-11		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
804	chr10	28780292	28780293	rs2807743	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10p12.1		rs2807743-C	0.231	1E-19				Affymetrix [10369434] (imputed)	N
804	chr10	28780292	28780293	rs2807743	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10p12.1		rs2807743-C	0.231	2E-19				Affymetrix [10369434] (imputed)	N
804	chr10	28780292	28780293	rs2807743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807743-T	0.769528	9E-26		0.02770083	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28780292	28780293	rs2807743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807743-T	0.769531	1E-48		0.038644407	[0.033-0.044] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28780292	28780293	rs2807743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p12.1	NR	rs2807743-T	0.770339	1E-43		0.030452	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
804	chr10	28780292	28780293	rs2807743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p12.1	NR	rs2807743-T	0.76997	7E-51		0.035483	[0.031-0.04] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
804	chr10	28780292	28780293	rs2807743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs2807743-T	0.782301	3E-15				Affymetrix, Illumina [19905671] (imputed)	N
804	chr10	28780292	28780293	rs2807743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p12.1		rs2807743-?	NR	2E-46				NR [~ 8900000] (imputed)	N
804	chr10	28780292	28780293	rs2807743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2807743-T	0.7693	2E-19		0.03858379	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780292	28780293	rs2807743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2807743-T	0.7692	2E-22		0.04186099	[0.033-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.769304	8E-22		0.025447816	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28780372	28780373	rs2998286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10p12.1	NR	rs2998286-C	0.769831	1E-17		0.020883	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
804	chr10	28780372	28780373	rs2998286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p12.1		rs2998286-?	NR	2E-38				NR [~ 8900000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7695	5E-23		0.04222937	[0.034-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7694	8E-14		0.03180453	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7695	7E-22		0.04109397	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7695	2E-21		0.04061373	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7694	2E-23		0.04277287	[0.034-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28780372	28780373	rs2998286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10p12.1	RP11-351M16.3	rs2998286-C	0.7695	9E-13		0.03035832	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28781366	28781367	rs2807742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10p12.1		rs2807742-A	NR	1E-34		0.0335	[0.028-0.039] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
804	chr10	28781366	28781367	rs2807742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10p12.1		rs2807742-A	NR	8E-35		0.0341	[0.029-0.04] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
804	chr10	28781366	28781367	rs2807742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p12.1		rs2807742-A	NR	4E-33		0.0248	[0.021-0.029] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
804	chr10	28781366	28781367	rs2807742	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	10p12.1		rs2807742-G	0.23	3E-21				Affymetrix [10369434] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807742-A	0.770387	8E-41		0.035232723	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807742-A	0.770386	1E-11		0.018008573	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807742-A	0.770366	6E-40		0.034946743	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807742-A	0.770369	2E-16		0.021802248	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs2807742-A	0.811673	2E-46				Affymetrix, Illumina [24649327] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs2807742-A	0.796308	1E-46				Affymetrix, Illumina [23114412] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10p12.1	NR	rs2807742-A	0.771408	1E-45		0.032553	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
804	chr10	28781366	28781367	rs2807742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p12.1	NR	rs2807742-A	0.80016	8E-51				Affymetrix, Illumina [19872809] (imputed)	N
804	chr10	28784482	28784483	rs2807740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10p12.1	RP11-351M16.3	rs2807740-T	0.769033	4E-13		0.019186603	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr10	28787793	28787794	rs2790430	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p12.1	BAMBI	rs2790430-?	NR	6E-6	(phosphoenolpyruvic acid)	0.21565281	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
804	chr10	28799871	28799873	rs143737784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10p12.1	intergenic	rs143737784-A	0.7615	3E-10		0.02632646	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28807984	28807985	rs57819080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p12.1	Intergenic	rs57819080-T	0.2275	3E-8	(MTAG)	0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
804	chr10	28812110	28812111	rs34127688	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10p12.1	NR	rs34127688-T	0.038	9E-7	(female)	0.3579	[0.22-0.5] unit increase	Illumina [11133794] (imputed)	N
804	chr10	28814291	28814292	rs2491251	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10p12.1	WAC-AS1	rs2491251-G	0.7734	2E-11		0.02848554	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr10	28820021	28820021	rs3029439	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	10p12.1	WAC-AS1	rs3029439-CAA	0.7738	5E-10		0.02641109	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
805	chr10	28852021	28852022	rs181666690	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10p12.1	Intergenic	rs181666690-T	NR	1E-7	(within families)	5.289	unit decrease	Affymetrix [up to 15107142] (imputed)	N
805	chr10	28856818	28856819	rs2790457	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	10p12.1	WAC	rs2790457-G	0.739	2E-8		1.12	[NR]	Illumina [at least 7182761] (imputed)	N
805	chr10	28876863	28876863	rs397825964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10p12.1		rs397825964-CT	NR	3E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
805	chr10	28884349	28884351	rs141045896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10p12.1		rs141045896-A	NR	5E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
805	chr10	28893613	28893614	rs332165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10p12.1	WAC	rs332165-A	0.522129	2E-9		0.0128861	[0.0088-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr10	28912970	28912971	rs332184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p12.1	BAMBI	rs332184-?	NR	3E-6	(phosphoenolpyruvic acid)	0.22385822	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
805	chr10	28913308	28913309	rs332185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10p12.1	WAC	rs332185-C	0.257078	1E-9		0.015488813	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr10	28913308	28913309	rs332185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10p12.1	WAC	rs332185-C	0.256912	1E-15		0.020548573	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr10	28916892	28916893	rs11007165	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10p12.1	WAC	rs11007165-T	0.723297	4E-11		0.00160063	[0.0011-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
805	chr10	28922227	28922228	rs332194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs332194-?	NR	3E-28				NR [~ 8900000] (imputed)	N
805	chr10	28924900	28924901	rs1265842	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10p12.1	WAC	rs1265842-T	0.4834	2E-10		0.1113	[0.077-0.145] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
805	chr10	28927608	28927609	rs332117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10p12.1	NR	rs332117-A	0.279856	3E-10		0.012845	[0.0089-0.0168] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
805	chr10	28958604	28958604	rs10625795	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p12.1	WAC, BAMBI	rs10625795-T	0.8904	6E-9		0.1368	[0.092-0.182] unit increase	Affymetrix [~ 11900000] (imputed)	N
805	chr10	28966232	28966233	rs71492575	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p12.1	BAMBI	rs71492575-A	0.6477	1E-23		0.0206	[0.016-0.025] unit increase	Affymetrix [18391927] (imputed)	N
806	chr10	28968790	28968792	rs139696723	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	10p12.1	NR	rs139696723-T	0.03488	2E-6		1.171	[0.39-1.95] unit increase	Illumina [at least 567677] (imputed)	N
806	chr10	28977009	28977010	rs655766	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	10p12.1	BAMBI	rs655766-T	NR	1E-6	(All)	0.08	[0.049-0.111] unit increase	Illumina [6900000] (imputed)	N
806	chr10	28983492	28983493	rs201056984	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10p12.1	NR	rs201056984-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
806	chr10	29010417	29010418	rs34718559	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs34718559-?	NR	3E-11		0.0437217	[0.03-0.057] unit increase	Affymetrix [20259828] (imputed)	N
806	chr10	29024129	29024130	rs1014607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	10p12.1		rs1014607-A	NR	4E-10		0.0575	[0.039-0.076] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
806	chr10	29024129	29024130	rs1014607	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	10p12.1	NR	rs1014607-A	NR	5E-10		0.9536		Affymetrix [9869154] (imputed)	N
806	chr10	29024129	29024130	rs1014607	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	10p12.1	BAMBI, LINC01517	rs1014607-A	NR	2E-21		0.96	[0.95-0.97]	Affymetrix [9869154] (imputed)	N
806	chr10	29024129	29024130	rs1014607	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	10p12.1	BAMBI, LINC01517	rs1014607-G	0.693	4E-8		1.060322	[1.038566-1.082533]	Affymetrix [NR] (imputed)	N
806	chr10	29027222	29027223	rs1248993	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	10p12.1	BAMBI	rs1248993-?	NR	6E-6	(Afro-Caribbean)	4.27	[2.28-8.01]	Illumina [2485249] (imputed)	N
806	chr10	29045857	29045858	rs1775921	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	10p12.1	BAMBI	rs1775921-T	0.894	4E-6		0.184	[0.11-0.26] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
806	chr10	29073447	29073448	rs11816944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10p12.1		rs11816944-?	NR	2E-8				NR [~ 8900000] (imputed)	N
806	chr10	29087203	29087203	rs746652558	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs746652558-?	NR	5E-21		0.021101	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
806	chr10	29091722	29091723	rs7893940	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	LINC01517	rs7893940-A	0.327268	3E-21		0.0185763	[0.015-0.022] unit decrease	NR [13737936] (imputed)	N
806	chr10	29091722	29091723	rs7893940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs7893940-?	NR	4E-24				NR [~ 8900000] (imputed)	N
807	chr10	29153881	29153882	rs117056592	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	10p12.1		rs117056592-G	0.0016	7E-7		1.3	[0.79-1.81] unit increase	Illumina [21233433] (imputed)	N
807	chr10	29180307	29180308	rs787351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10p12.1	NR	rs787351-C	NR	3E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr10	29196654	29196655	rs703037	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10p12.1	C10orf126	rs703037-A	0.1845	2E-11		0.0065	[0.0045-0.0085] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
807	chr10	29203986	29203987	rs703031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10p12.1		rs703031-T	NR	7E-23		0.0275	[0.022-0.033] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
807	chr10	29227371	29227372	rs12769962	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p12.1	C10orf126	rs12769962-G	0.852569	3E-9		0.0154317	[0.01-0.021] unit increase	NR [13737936] (imputed)	N
808	chr10	29236394	29236395	rs10826545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10p12.1		rs10826545-?	NR	7E-11				NR [~ 8900000] (imputed)	N
808	chr10	29236394	29236395	rs10826545	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	Intergenic	rs10826545-A		6E-6		1.5399	[0.88-2.2] unit decrease	Illumina [7576458] (imputed)	N
808	chr10	29237461	29237462	rs10826546	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	Intergenic	rs10826546-A		5E-6		1.5444	[0.88-2.21] unit increase	Illumina [7576458] (imputed)	N
808	chr10	29246204	29246205	rs117352156	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	Intergenic	rs117352156-T		5E-6		1.5494	[0.88-2.22] unit decrease	Illumina [7576458] (imputed)	N
808	chr10	29246248	29246249	rs188370812	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	Intergenic	rs188370812-A		2E-6		1.7787	[1.05-2.51] unit decrease	Illumina [7576458] (imputed)	N
808	chr10	29246249	29246250	rs192649950	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	Intergenic	rs192649950-A		2E-6		1.7727	[1.04-2.5] unit increase	Illumina [7576458] (imputed)	N
808	chr10	29247307	29247308	rs184481935	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10p12.1	RP11-492M23.2	rs184481935-A	0.0024	2E-6		0.3926	[0.23-0.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr10	29247307	29247308	rs184481935	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	10p12.1	RP11-492M23.2	rs184481935-A	0.0024	4E-6		0.387	[0.22-0.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr10	29255593	29255594	rs10826548	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10p12.1	LOC101929236	rs10826548-A		1E-6		1.6612	[0.99-2.33] unit decrease	Illumina [7576458] (imputed)	N
808	chr10	29284785	29284786	rs11007346	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10p12.1	NR	rs11007346-?	NR	3E-6		0.49	[0.44-0.54]	Illumina [539000] (imputed)	N
808	chr10	29288294	29288295	rs2016129	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	10p12.1	C10orf126	rs2016129-T	0.0682	4E-6		5.091	[NR] unit increase	Illumina [4827900] (imputed)	N
808	chr10	29289030	29289031	rs11007350	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	10p12.1	intergenic	rs11007350-?	NR	3E-6		1.37	[1.20-1.56]	Illumina [948142]	N
808	chr10	29291897	29291898	rs1612122	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	10p12.1	NR	rs1612122-T	0.48	7E-6		1.17	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
808	chr10	29331366	29331367	rs75512765	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p12.1	NR	rs75512765-G	0.0122	2E-8	(PLD3)	0.02628	NR unit increase	Illumina [1671387] (imputed)	N
808	chr10	29336848	29336849	rs788076	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p12.1	C10orf126	rs788076-G	0.0234402	3E-8	(8 ms)	0.105194	[0.068-0.142] unit decrease	Affymetrix [10000000] (imputed)	N
808	chr10	29336848	29336849	rs788076	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		10p12.1	LYZL1	rs788076-A	NR	2E-6		0.0439	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
808	chr10	29339869	29339870	rs1763398	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs1763398-?	NR	3E-12				Affymetrix [NR]	N
809	chr10	29364696	29364697	rs10826566	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	10p12.1	intergenic	rs10826566-A	0.17	4E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
809	chr10	29386905	29386906	rs1248290	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	10p12.1	LYZL1	rs1248290-A	NR	1E-8	(k__Bacteria|p__Firmicutes|c__Negativicutes|o__Selenomonadales|f__Veillonellaceae|g__Dialister)	5.6683493	NR Z-score decrease	Illumina [8100000] (imputed)	N
809	chr10	29388638	29388639	rs1889714	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	10p12.1	LYZL1	rs1889714-A	NR	6E-9	(k__Bacteria|p__Firmicutes|c__Negativicutes|o__Selenomonadales|f__Veillonellaceae|g__Dialister|s__Dialister_invisus)	5.8294253	NR Z-score decrease	Illumina [8100000] (imputed)	N
809	chr10	29407486	29407487	rs548732	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p12.1	NR	rs548732-?	NR	6E-16				Affymetrix [NR]	N
809	chr10	29442942	29442943	rs7914342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10p12.1	LYZL1	rs7914342-A	NR	5E-9		0.0205121	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
809	chr10	29472547	29472548	rs570942	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p12.1		rs570942-?	NR	6E-9		0.0203771	[0.014-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
809	chr10	29474197	29474198	rs551966	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	10p12.1	NR	rs551966-?		1E-6		9.7472	[5.89-13.61] unit decrease	NR [NR] (imputed)	N
809	chr10	29487364	29487365	rs4387258	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	10p12.1	intergenic	rs4387258-G	0.14	4E-6			[NR]	Affymetrix [398699]	N
810	chr10	29491535	29491536	rs10826579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p12.1		rs10826579-?	NR	3E-18				NR [~ 8900000] (imputed)	N
810	chr10	29516515	29516516	rs501298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p12.1		rs501298-?	NR	6E-10				NR [~ 8900000] (imputed)	N
810	chr10	29568776	29568777	rs2493340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p12.1		rs2493340-?	NR	1E-8				NR [~ 8900000] (imputed)	N
810	chr10	29569271	29569272	rs7069887	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10p12.1	NR	rs7069887-A	NR	7E-9		5.781	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
810	chr10	29594790	29594791	rs10763707	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	10p11.23	LYZL1	rs10763707-?	NR	2E-6	(EA)	4.08	[2.30-7.23]	NR [341191]	N
811	chr10	29628965	29628966	rs1774936	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		10p11.23	intergenic	rs1774936-A	0.413782	8E-6		0.380522	[0.22-0.54] unit decrease	Illumina [640625] (imputed)	N
811	chr10	29631551	29631552	rs789923	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		10p11.23	intergenic	rs789923-A	0.365	7E-6		0.395	[0.22-0.57] unit decrease	Illumina [640625] (imputed)	N
811	chr10	29663413	29663414	rs73596019	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		LYZL1/PTCHD3P1/LOC105376473/LOC10798421	rs73596019-T	0.059000000000000004	7E-7		0.14	[0.081-0.199] unit decrease	Illumina [3700000] (imputed)	N
811	chr10	29706759	29706760	rs66520641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10p11.23		rs66520641-G	NR	4E-8		0.0184	[0.012-0.025] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
811	chr10	29707550	29707551	rs2182400	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	10p11.23	SVIL	rs2182400-G	0.2418	2E-9		1.0969799	1.06-1.13	Affymetrix, Illumina [up to 7736182] (imputed)	N
811	chr10	29707550	29707551	rs2182400	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	10p11.23	SVIL	rs2182400-G	0.2418	2E-6			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
812	chr10	29758514	29758515	rs11007604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p11.23		rs11007604-?	NR	2E-8				NR [~ 8900000] (imputed)	N
812	chr10	29781797	29781798	rs6481598	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10p11.23	SVIL	rs6481598-C	0.7934	3E-10		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
812	chr10	29781797	29781798	rs6481598	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10p11.23	SVIL	rs6481598-C	0.7818	4E-9		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
812	chr10	29812601	29812602	rs7070678	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA	10p11.23	SVIL	rs7070678-?	NR	4E-8	(AA)	0.006807	[0.0044-0.0092] unit decrease	Illumina [at least 620901]	N
812	chr10	29819223	29819226	rs35237331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10p11.23		rs35237331-T	NR	9E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
812	chr10	29819223	29819226	rs35237331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10p11.23	NR	rs35237331-T	NR	4E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
812	chr10	29859855	29859856	rs12775980	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	10p11.23	SVIL	rs12775980-A	0.03	4E-8		2.12	[1.61-2.79] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
813	chr10	29898565	29898566	rs1247436	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.23	LYZL1	rs1247436-?	NR	4E-6	(glycodeoxycholate)	0.2800108	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
813	chr10	29936882	29936883	rs75690380	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	10p11.23	NR	rs75690380-G	0.0277	6E-7		0.7692	[0.47-1.07] unit decrease	Illumina [~ 600000] (imputed)	N
813	chr10	29941620	29941621	rs80082057	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	10p11.23	NR	rs80082057-T	0.0276	5E-7		0.7723	[0.47-1.07] unit decrease	Illumina [~ 600000] (imputed)	N
813	chr10	29942551	29942552	rs77628230	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	10p11.23	NR	rs77628230-T	0.0278	5E-7		0.7739	[0.48-1.07] unit decrease	Illumina [~ 600000] (imputed)	N
813	chr10	29944251	29944252	rs78721916	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	10p11.23	NR	rs78721916-T	0.0224	2E-6		0.8776	[0.52-1.23] unit decrease	Illumina [~ 600000] (imputed)	N
813	chr10	29979285	29979286	rs188406805	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	10p11.23	NR	rs188406805-C	0.01	7E-6		1.5	[1.32-1.68]	Illumina [8468885] (imputed)	N
813	chr10	29982015	29982016	rs150504741	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10p11.23		rs150504741-T	NR	6E-6		1.25621		Affymetrix, Illumina [62056310] (imputed)	N
813	chr10	30008662	30008663	rs1927457	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	10p11.23	SVIL	rs1927457-?	0.31	8E-6			[NR]	Illumina [551642]	N
813	chr10	30013102	30013103	rs7089445	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	10p11.23	SVIL	rs7089445-T	0.31	2E-6		0.2	unit increase	Illumina [5600000] (imputed)	N
814	chr10	30017047	30017048	rs7098831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p11.23		rs7098831-?	NR	6E-9				NR [~ 8900000] (imputed)	N
814	chr10	30026890	30026890	rs563807740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p11.23	SVIL	rs563807740-CT	0.033694	3E-12		0.045306038	[0.033-0.058] unit increase	Affymetrix [93095623] (imputed)	N
814	chr10	30028986	30028987	rs16930542	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p11.23	NR	rs16930542-?	NR	8E-9				Illumina [7760689] (imputed)	N
814	chr10	30081976	30081977	rs72804888	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	10p11.23	NR	rs72804888-?	NR	8E-7		1.5575172	[1.31-1.86]	Affymetrix, Illumina [~ 10400000] (imputed)	N
814	chr10	30083362	30083363	rs16930589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p11.23		rs16930589-T	0.02951	8E-10		0.041116714	[0.028-0.054] unit increase	Affymetrix [93095623] (imputed)	N
814	chr10	30087358	30087359	rs2986961	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	10p11.23	intergenic	rs2986961-C	0.26	5E-7		1.14	[1.08-1.20]	Affymetrix, Illumina [~ 2300000] (imputed)	N
814	chr10	30088993	30088994	rs3006553	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	10p11.23		rs3006553-G	NR	5E-6	(GLM)	1.0728	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
814	chr10	30088993	30088994	rs3006553	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	10p11.23		rs3006553-?	NR	8E-6	(MLM)	0.186628	[0.11-0.27] unit increase	Illumina [~ 9000000] (imputed)	N
814	chr10	30096627	30096628	rs2986971	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10p11.23	intergenic	rs2986971-G	0.48	3E-6		0.49	[NR] unit increase	Illumina [324623]	N
814	chr10	30102708	30102709	rs141708820	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	10p11.23		rs141708820-?	NR	1E-9		1.3747	[0.93-1.82] unit increase	Affymetrix [NR] (imputed)	N
815	chr10	30162422	30162423	rs2150562	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	10p11.23	NR	rs2150562-A	0.31	2E-8		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
815	chr10	30167753	30167754	rs10740811	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta distensibility	29,684 individuals	NA	10p11.23		rs10740811-G	0.413789	1E-9		0.0431651	[0.029-0.057] decrease	Affymetrix [NR]	N
815	chr10	30177887	30177888	rs3006564	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	10p11.23	intergenic	rs3006564-?	0.48	5E-6	(CLP)	1.32	[1.47-1.16]	Illumina [NR]	N
815	chr10	30229868	30229869	rs146650065	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10p11.23	Intergenic	rs146650065-A	NR	4E-8	(between families)	5.471	unit decrease	Affymetrix [up to 15107142] (imputed)	N
815	chr10	30234189	30234190	rs35374984	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	10p11.23	KIAA1462	rs35374984-A	0.29	4E-8	(ratio950)	0.1	NR unit increase	Illumina [at least 10657975] (imputed)	N
815	chr10	30234883	30234884	rs7897478	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	10p11.23	KIAA1462	rs7897478-A	0.9418	1E-7	(AA)			Illumina [NR] (imputed)	N
815	chr10	30248993	30248994	rs2795616	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.23		rs2795616-A	0.49	5E-13		7.23	z score increase	Affymetrix [9061022] (imputed)	N
815	chr10	30249152	30249153	rs1537132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p11.23		rs1537132-C	0.490215	7E-12		0.0155165605	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
815	chr10	30251647	30251648	rs2767627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p11.23		rs2767627-A	0.453551	1E-14		0.017531801	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr10	30253249	30253250	rs35495115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p11.23		rs35495115-?	NR	1E-10				NR [~ 8900000] (imputed)	N
815	chr10	30254416	30254417	rs1774222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p11.23		rs1774222-?	NR	2E-8				NR [~ 8900000] (imputed)	N
815	chr10	30262410	30262411	rs2767623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10p11.23		rs2767623-G	NR	4E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
815	chr10	30262410	30262411	rs2767623	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.23	SVIL	rs2767623-?	NR	8E-6	(UDP glucose; UDP galactose)	0.1774737	[0.1-0.255] unit increase	Affymetrix [at least 2500000] (imputed)	N
815	chr10	30267809	30267810	rs3847402	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	10p11.23	SVIL, KIAA1462	rs3847402-A	0.4057	8E-11		0.027	[0.019-0.035] unit decrease	Affymetrix [27624732] (imputed)	N
815	chr10	30268769	30268770	rs7914842	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10p11.23	KIAA1462	rs7914842-A	0.5787	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [19819130] (imputed)	N
815	chr10	30268769	30268770	rs7914842	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10p11.23	KIAA1462	rs7914842-A	0.5787	3E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix [19819130] (imputed)	N
816	chr10	30279345	30279346	rs34432779	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10p11.23	NR	rs34432779-?	NR	9E-6		2.88	[2.22-3.75]	Illumina [539000] (imputed)	N
816	chr10	30286262	30286263	rs12764479	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.23	SVIL	rs12764479-?	NR	9E-7	(CE 20:5)	0.5764392	[0.35-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
816	chr10	30292292	30292293	rs12779954	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.23	KIAA1462	rs12779954-A	0.546354	7E-9	(-24 ms)	0.0319185	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
816	chr10	30292292	30292293	rs12779954	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.23	KIAA1462	rs12779954-A	0.546354	4E-9	(-26 ms)	0.0325305	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
816	chr10	30292292	30292293	rs12779954	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.23	KIAA1462	rs12779954-A	0.546354	4E-8	(-22 ms)	0.0296446	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
816	chr10	30294541	30294542	rs1774241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10p11.23	NR	rs1774241-G	0.417255	3E-10		0.01235	[0.0085-0.0162] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
816	chr10	30306803	30306804	rs2478839	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	10p11.23	NR	rs2478839-G		4E-6				Illumina [458865]	N
816	chr10	30312969	30312970	rs61841113	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p11.23		rs61841113-T	0.602	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
816	chr10	30316071	30316072	rs3739998	21088011	Erdmann J	2010-11-18	Eur Heart J	Genome-wide association study identifies a new locus for coronary artery disease on chromosome 10p11.23.	Coronary heart disease	1,157 European ancestry cases, 1,748 European ancestry controls	7,887 European ancestry cases, 8,244 European ancestry controls	10p11.23	KIAA1462	rs3739998-C	0.44	1E-11		1.15	[1.11-1.20]	Affymetrix [254558]	N
816	chr10	30316871	30316872	rs3739996	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10p11.23	NA	rs3739996-?		4E-19				Affymetrix, Illumina [NR] (imputed)	N
816	chr10	30317072	30317073	rs9337951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10p11.23		rs9337951-A	NR	1E-20		0.0214	[0.017-0.026] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
816	chr10	30317072	30317073	rs9337951	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p11.23	KIAA1462	rs9337951-A	0.317	3E-28		0.3282	[0.27-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
816	chr10	30317072	30317073	rs9337951	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	10p11.23	JCAD	rs9337951-A	0.345	7E-9				Affymetrix [28000000] (imputed)	N
816	chr10	30317072	30317073	rs9337951	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10p11.23	KIAA1462	rs9337951-A	0.3178	2E-17		0.0543	[0.042-0.067] unit increase	Affymetrix [at least 7947838] (imputed)	N
816	chr10	30317072	30317073	rs9337951	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10p11.23	KIAA1462	rs9337951-A	0.315	1E-17		0.062	[0.048-0.076] unit increase	Affymetrix [7947838] (imputed)	N
816	chr10	30317072	30317073	rs9337951	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	10p11.23	KIAA1462	rs9337951-A	0.34	3E-15		0.28	[0.2-0.36] unit increase	Affymetrix [~ 9800000] (imputed)	N
816	chr10	30317072	30317073	rs9337951	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p11.23	KIAA1462	rs9337951-G		9E-10		0.257	unit decrease	Affymetrix [at least 2696785] (imputed)	N
816	chr10	30317072	30317073	rs9337951	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p11.23	KIAA1462	rs9337951-G		3E-8	(EA)	0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
816	chr10	30317072	30317073	rs9337951	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p11.23	KIAA1462	rs9337951-G		1E-19		0.265	unit decrease	Affymetrix [at least 2696785] (imputed)	N
816	chr10	30321597	30321598	rs1887318	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	10p11.23	KIAA1462	rs1887318-T	0.428	4E-12		1.06	[1.04-1.08]	Affymetrix [9149595] (imputed)	N
816	chr10	30323891	30323892	rs2487928	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	10p11.23		rs2487928-A	0.46	3E-11		0.0558	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
816	chr10	30323891	30323892	rs2487928	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10p11.23	KIAA1462	rs2487928-A	0.4262	2E-17		0.0546	[0.042-0.067] unit increase	NR [8041861] (imputed)	N
816	chr10	30323891	30323892	rs2487928	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10p11.23	KIAA1462	rs2487928-A	0.418221	4E-11		1.06	[1.04- 1.08]	Affymetrix, Illumina [8600000] (imputed)	N
816	chr10	30326775	30326776	rs10826753	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	10p11.23	KIAA1462	rs10826753-C	0.57	2E-8		1.04	[1.02-1.07]	Illumina [5167567] (imputed)	N
816	chr10	30327391	30327392	rs943439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10p11.23		rs943439-T	NR	3E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
816	chr10	30327391	30327392	rs943439	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10p11.23	NR	rs943439-C		1E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
816	chr10	30335121	30335122	rs2505083	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10p11.23	JCAD	rs2505083-C	0.406858	7E-10		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
816	chr10	30335121	30335122	rs2505083	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10p11.23	JCAD	rs2505083-?	NR	6E-15		0.0406733	[0.03-0.051] unit increase	Illumina [4804024] (imputed)	N
816	chr10	30335121	30335122	rs2505083	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10p11.23	KIAA1462	rs2505083-C	0.39	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [8600000] (imputed)	N
816	chr10	30335121	30335122	rs2505083	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10p11.23	KIAA1462	rs2505083-C	0.38	4E-8		1.07	[1.04-1.09]	Illumina [574919]	N
816	chr10	30335519	30335520	rs2505084	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p11.23	KIAA1462	rs2505084-A	0.4638	3E-12		0.1735	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
816	chr10	30335519	30335520	rs2505084	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10p11.23	KIAA1462	rs2505084-A	0.48	2E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
816	chr10	30335519	30335520	rs2505084	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10p11.23	KIAA1462	rs2505084-A	0.48	1E-12	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
816	chr10	30352970	30352971	rs4304656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10p11.23		rs4304656-T	NR	4E-8		0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
816	chr10	30369859	30369860	rs2505127	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	10p11.23	KIAA1462, MTPAP	rs2505127-?	NR	6E-6	(adjusted for dose, GFR & AST)	5.005	unit increase (EA, Australian cohort)	Illumina [610255]	N
816	chr10	30378862	30378863	rs7078436	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	10p11.23	JCAD	rs7078436-A	NR	1E-8		5.74	[NR] z score increase	NR [16213998]	N
816	chr10	30401661	30401662	rs7100631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p11.23		rs7100631-?	NR	5E-8				NR [~ 8900000] (imputed)	N
817	chr10	30456127	30456128	rs2779071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.23		rs2779071-?	NR	2E-11				NR [~ 8900000] (imputed)	N
817	chr10	30467177	30467178	rs2482826	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10p11.23	JCAD, LOC101929279	rs2482826-C	0.3031	4E-8		0.0841	[0.054-0.114] unit increase	Affymetrix [~ 11900000] (imputed)	N
817	chr10	30467177	30467178	rs2482826	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10p11.23	NR	rs2482826-G	0.6987	2E-6		0.021	[0.013-0.029] unit decrease	Affymetrix [up to 27624732] (imputed)	N
817	chr10	30469001	30469002	rs1332618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10p11.23		rs1332618-A	0.647577	4E-15		0.018584765	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
817	chr10	30483087	30483088	rs2462015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs2462015-C	0.571654	5E-17				Affymetrix, Illumina [24649327] (imputed)	N
817	chr10	30486132	30486133	rs2462017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10p11.23	NR	rs2462017-A	0.652335	3E-12		0.013995	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
817	chr10	30490703	30490704	rs2462021	21041247	Perlis RH	2010-11-01	Am J Psychiatry	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	10p11.23	PRKCE	rs2462021-C	NR	8E-6		1.1755		Affymetrix [1922309] (imputed)	N
817	chr10	30491406	30491407	rs2488010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs2488010-G	0.574169	9E-16				Affymetrix, Illumina [23467995] (imputed)	N
817	chr10	30492266	30492267	rs2091084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10p11.23	NR	rs2091084-C	0.65297	4E-13		0.01700872	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
817	chr10	30492266	30492267	rs2091084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10p11.23		rs2091084-C	0.65295	3E-10		0.014821904	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
817	chr10	30492266	30492267	rs2091084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10p11.23	NR	rs2091084-C	0.653201	6E-19		0.01735	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
817	chr10	30496124	30496125	rs503598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10p11.23		rs503598-?	NR	2E-8				NR [~ 8900000] (imputed)	N
817	chr10	30496904	30496905	rs475616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10p11.23		rs475616-G	NR	3E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
817	chr10	30496904	30496905	rs475616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10p11.23	NR	rs475616-G	0.65632	3E-15		0.01572	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
817	chr10	30496904	30496905	rs475616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs475616-G	0.598194	7E-12				Affymetrix, Illumina [23472807] (imputed)	N
817	chr10	30496904	30496905	rs475616	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p11.23	NR	rs475616-?	NR	5E-7		5.024	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
817	chr10	30496904	30496905	rs475616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10p11.23	intergenic	rs475616-G	0.6558	1E-9		0.02292479	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr10	30503954	30503955	rs2689216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs2689216-A	0.544514	1E-21				Affymetrix, Illumina [24588908] (imputed)	N
817	chr10	30503954	30503955	rs2689216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10p11.23	NR	rs2689216-A	0.645648	2E-22		0.01884	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
817	chr10	30504707	30504708	rs1571956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10p11.23	NR	rs1571956-A	0.646094	1E-11		0.013715	[0.0097-0.0177] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
817	chr10	30505701	30505702	rs2482820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10p11.23		rs2482820-C	0.353592	9E-13		0.016740492	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
817	chr10	30507098	30507099	rs2482819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs2482819-A	0.577901	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
817	chr10	30507188	30507189	rs572337598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10p11.23		rs572337598-C	0.627018	6E-11		0.01604675	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
817	chr10	30511197	30511198	rs1720607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10p11.23		rs1720607-A	NR	3E-14		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
817	chr10	30519831	30519832	rs2995271	23143602	Whitcomb DC	2012-11-11	Nat Genet	Common genetic variants in the CLDN2 and PRSS1-PRSS2 loci alter risk for alcohol-related and sporadic pancreatitis.	Pancreatitis	676 European ancestry cases, 4,507 European ancestry controls	910 European ancestry cases, 4,170 European ancestry controls	10p11.23	NR	rs2995271-T	0.762	8E-7		1.27	[1.20-1.34]	Illumina [625739]	N
818	chr10	30576937	30576938	rs12220014	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10p11.23	NR	rs12220014-?	NR	4E-6	(EA)	0.6201	[0.36-0.88] unit decrease	Illumina [up to 11892802] (imputed)	N
818	chr10	30623336	30623337	rs138301722	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ CD38+ B cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	10p11.23		rs138301722-G	0.0172	2E-8		0.5354	[0.35-0.72] unit increase	Illumina [18238137] (imputed)	N
819	chr10	30680023	30680024	rs2031925	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	10p11.23	NR	rs2031925-?	0.05	2E-7		2.43	[1.73-3.40]	Affymetrix, Illumina [~ 6000000] (imputed)	N
819	chr10	30689315	30689316	rs2265189	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10p11.23	NR	rs2265189-A	0.389109	4E-12		0.0145758	[0.01-0.019] unit increase	NR [NR]	N
819	chr10	30691502	30691503	rs2050392	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p11.23	RP11-449I17.5	rs2050392-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
819	chr10	30691502	30691503	rs2050392	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.23	NR	rs2050392-?	NR	2E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
819	chr10	30696941	30696942	rs35419234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10p11.23		rs35419234-C	NR	6E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
819	chr10	30728100	30728101	rs1042058	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	10p11.23	MAP3K8	rs1042058-?		5E-6				Illumina [9578670] (imputed)	N
819	chr10	30728100	30728101	rs1042058	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10p11.23	MAP3K8	rs1042058-?		3E-12				Illumina [9725440] (imputed)	N
819	chr10	30728100	30728101	rs1042058	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10p11.23	MAP3K8	rs1042058-?		5E-10				Illumina [9560910] (imputed)	N
819	chr10	30728100	30728101	rs1042058	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.23	NR	rs1042058-G	0.6	2E-9	(EA)	1.0776412	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
819	chr10	30728100	30728101	rs1042058	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p11.23	MAP3K8	rs1042058-C	0.592	6E-11		1.075	[1.044-1.106]	Affymetrix, Illumina [1230000] (imputed)	N
819	chr10	30751170	30751171	rs7923452	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	10p11.23	Intergenic	rs7923452-T	NR	3E-6		0.0229216	[0.013-0.032] unit increase	Illumina [13520550] (imputed)	N
819	chr10	30795747	30795748	rs72808065	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	10p11.23	MAP3K8	rs72808065-T	NR	7E-7		3.01167	[1.82-4.2] unit decrease	NR [9955952] (imputed)	N
819	chr10	30801717	30801718	rs9284092	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10p11.23	MAP3K8	rs9284092-G	0.73	2E-8				NR [> 9500000] (imputed)	N
820	chr10	30815638	30815639	rs72808079	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10p11.23	Intergenic	rs72808079-T	NR	3E-6		0.040878	[0.024-0.058] unit decrease	Illumina [13520550] (imputed)	N
820	chr10	30834631	30834632	rs11008099	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA		NR	rs11008099-A	0.11	9E-6		2.74	[1.54-3.94] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
820	chr10	30899290	30899291	rs73245065	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	10p11.23	LYZL2	rs73245065-G	0.02	7E-8		0.37	[0.23-0.51] g/cm2 decrease	Illumina [NR] (imputed)	N
820	chr10	30912029	30912030	rs399593	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	10p11.23	LYZL2	rs399593-?	NR	9E-9	(DMFS2)			Illumina [518997]	N
821	chr10	30992881	30992882	rs10733997	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Retinopathy x type 2 diabetes interaction	13,881 European ancestry cases, 123,538 European ancestry controls	NA	10p11.23	SVIL2P	rs10733997-G	0.037	1E-8				Affymetrix [at least 723305] (imputed)	N
821	chr10	30997827	30997828	rs10826851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p11.23	Intergenic	rs10826851-T	0.6387	9E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
821	chr10	31014999	31015000	rs181201469	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	10p11.23	NR	rs181201469-G	NR	3E-6		0.885	[0.52-1.25] SD units decrease	NR [10700000] (imputed)	N
821	chr10	31029751	31029752	rs7917542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10p11.23		rs7917542-G	NR	2E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
821	chr10	31033002	31033003	rs11008218	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p11.23	SVILP1	rs11008218-G	NR	2E-6		1.0564	NR	Affymetrix, Illumina [8278136] (imputed)	N
821	chr10	31040362	31040363	rs903270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.23	NR	rs903270-C	0.609293	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
821	chr10	31040516	31040517	rs903269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10p11.23	NR	rs903269-C	0.6129	3E-12		0.013229	[0.0095-0.0169] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
821	chr10	31040516	31040517	rs903269	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	10p11.23	SVILP1	rs903269-?	NR	4E-8		0.003811	[0.0019-0.0057] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
821	chr10	31042493	31042494	rs11008222	25138779	Mitchell LE	2014-08-18	Hum Mol Genet	Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.	Congenital left-sided heart lesions (maternal effect)	284 European ancestry case-parent trios, up to 93 case-parent trios	216 European ancestry case-parent trios, 8 case-parent trios	10p11.23	ZNF438	rs11008222-?	0.49	6E-7		1.64	[1.34-2.00]	Illumina [1712604] (imputed)	N
821	chr10	31054185	31054186	rs947091	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p11.23	LOC105376480	rs947091-G	0.520223	7E-112		0.0418658	[0.038-0.046] unit decrease	NR [13737936] (imputed)	N
821	chr10	31054185	31054186	rs947091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p11.23		rs947091-?	NR	1E-103				NR [~ 8900000] (imputed)	N
821	chr10	31054185	31054186	rs947091	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10p11.23		rs947091-?	NR	1E-99		0.0432843	[0.039-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
821	chr10	31054185	31054186	rs947091	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p11.23	LOC105376480	rs947091-G	0.51872	2E-8	(men)	0.0252144	[0.015-0.035] unit decrease	NR [17166351] (imputed)	N
821	chr10	31054185	31054186	rs947091	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p11.23	LOC105376480	rs947091-G	0.517546	6E-29		0.0359972	[0.029-0.043] unit decrease	NR [17166351] (imputed)	N
821	chr10	31054185	31054186	rs947091	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10p11.23	LOC105376480	rs947091-G	0.516521	1E-20	(women)	0.0418618	[0.033-0.051] unit decrease	NR [17166351] (imputed)	N
822	chr10	31084455	31084456	rs151257179	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10p11.23	NR	rs151257179-G	NR	2E-6	(random effect)	1.17	NR	NR [6904914] (imputed)	N
822	chr10	31091192	31091193	rs4749615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.23		rs4749615-?	NR	1E-13				NR [~ 8900000] (imputed)	N
822	chr10	31095737	31095738	rs10826869	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10p11.23	Intergenic	rs10826869-A	0.5657	4E-8	(MTAG)	0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
822	chr10	31101742	31101743	rs1417569	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	10p11.23	NR	rs1417569-?	NR	4E-6				Illumina [7333833] (imputed)	N
822	chr10	31113978	31113978	rs776620768	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p11.23	ZNF438	rs776620768-CT	0.6467	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix [18391927] (imputed)	N
822	chr10	31117327	31117328	rs11008281	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p11.23	NR	rs11008281-T	0.3647	1E-17				NR [9056863] (imputed)	N
822	chr10	31117357	31117358	rs11008282	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p11.23		rs11008282-A	0.34	1E-20		9.3	z score increase	Affymetrix [9061022] (imputed)	N
822	chr10	31117357	31117358	rs11008282	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p11.23	NR	rs11008282-A	0.3648	1E-17				NR [9056863] (imputed)	N
822	chr10	31117357	31117358	rs11008282	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 121)	19,670 European ancestry individuals	NA	10p11.23		rs11008282-?	NR	8E-10				NR [9705931] (imputed)	N
822	chr10	31118064	31118065	rs7084828	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10p11.23	SVILP1, ZNF438	rs7084828-?	NR	4E-15		0.023393625	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
822	chr10	31118095	31118096	rs2000099	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	10p11.23		rs2000099-C	0.34	6E-10				Affymetrix [9061022] (imputed)	N
822	chr10	31118095	31118096	rs2000099	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.23		rs2000099-C	0.34	3E-47		14.43	z score increase	Affymetrix [9061022] (imputed)	N
822	chr10	31119221	31119222	rs7089982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10p11.23		rs7089982-C	0.638731	5E-14		0.0157571	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
822	chr10	31120512	31120513	rs7095087	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p11.23	ZNF438	rs7095087-?		4E-13				NR [7428630] (imputed)	N
822	chr10	31122934	31122935	rs2994651	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	10p11.23	CPT2, C1orf123, MAGOH, LRP8	rs2994651-?		3E-8				NR [7428630] (imputed)	N
822	chr10	31122934	31122935	rs2994651	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10p11.23	NR	rs2994651-?		1E-8				NR [7428630] (imputed)	N
822	chr10	31127165	31127166	rs12413361	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	10p11.23	ZNF438	rs12413361-T	0.36	7E-8		0.02	[0.0082-0.0318] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
822	chr10	31129882	31129883	rs947099	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p11.23		rs947099-A	0.34	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
822	chr10	31171328	31171329	rs11814082	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10p11.23	ZNF438	rs11814082-T	0.819758	1E-12		0.017058	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
822	chr10	31171625	31171626	rs3006593	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10p11.23	NR	rs3006593-C	0.3799	3E-9		0.00681193	[0.0045-0.0091] unit increase	Affymetrix [16582621] (imputed)	N
822	chr10	31171625	31171626	rs3006593	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10p11.23	NR	rs3006593-C	0.3799	8E-10		0.00767249	[0.0052-0.0101] unit increase	Affymetrix [16582614] (imputed)	N
822	chr10	31174502	31174503	rs1027341	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10p11.23	NR	rs1027341-?	NR	7E-9				Affymetrix [NR]	N
823	chr10	31274544	31274545	rs61845162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p11.23		rs61845162-?	NR	3E-14				NR [~ 8900000] (imputed)	N
823	chr10	31281249	31281250	rs3006584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p11.23		rs3006584-?	NR	6E-9				NR [~ 8900000] (imputed)	N
823	chr10	31297483	31297484	rs2797910	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	10p11.23	ZNF438	rs2797910-G	0.4176	6E-6	(height)	0.01036	NR unit decrease	Affymetrix [305158]	N
823	chr10	31297647	31297648	rs2642192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.23		rs2642192-?	NR	1E-10				NR [~ 8900000] (imputed)	N
824	chr10	31350176	31350177	rs2793112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p11.23		rs2793112-?	NR	3E-11				NR [~ 8900000] (imputed)	N
824	chr10	31350493	31350494	rs1776616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	10p11.23		rs1776616-G	NR	2E-9		0.0832	[0.056-0.11] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
824	chr10	31353299	31353300	rs67326273	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p11.23	intergenic	rs67326273-G	0.8071	8E-9		0.1809	[0.12-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
824	chr10	31365573	31365574	rs10218999	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p11.23	Intergenic	rs10218999-A	0.2041	5E-11	(MTAG)	0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr10	31366270	31366271	rs2994684	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	10p11.23	intergenic	rs2994684-?	0.155	3E-7	(clozapine-triglycerides)			Affymetrix [492900]	N
824	chr10	31369869	31369870	rs34283568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10p11.23	Intergenic	rs34283568-T	0.7982	9E-9		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
824	chr10	31371966	31371967	rs756916840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	10p11.23		rs756916840-T	NR	1E-8		1.7625	[1.16-2.37] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
824	chr10	31377562	31377563	rs181791462	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Testosterone levels in polycystic ovary syndrome	957 European ancestry cases	1,516 European ancestry cases	10p11.23	intergenic	rs181791462-C	0.02	5E-6		33.08	[20.59-45.57] ng/dL increase	Illumina [at least 624044] (imputed)	N
824	chr10	31379845	31379846	rs2793109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p11.23	Intergenic	rs2793109-T	0.5047	1E-9		0.0118	[0.0081-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
824	chr10	31380616	31380617	rs111430023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p11.23	Intergenic	rs111430023-A	0.1849	3E-11	(MTAG)	0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr10	31390126	31390127	rs1891621	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	10p11.22	NR	rs1891621-G	0.47	4E-6		1.39	[1.21-1.60]	Illumina [5216266] (imputed)	N
824	chr10	31390126	31390127	rs1891621	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	10p11.22	Intergenic	rs1891621-?		1E-11		1.1494253		Illumina [at least 8143088] (imputed)	N
824	chr10	31395760	31395761	rs1087056	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10p11.22	ZNF438	rs1087056-A	NR	3E-19		1.0877842	NR	Affymetrix, Illumina [8278136] (imputed)	N
824	chr10	31404394	31404395	rs141387448	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		10p11.22	Intergenic	rs141387448-T	0.005	4E-6	(liability model)	0.68	[0.39-0.97] unit increase	NR [19725427] (imputed)	N
824	chr10	31411354	31411355	rs1538981	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10p11.22		rs1538981-T	NR	4E-9		1.07	[1.05-1.09]	NR [13810676] (imputed)	N
824	chr10	31412560	31412561	rs11008355	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p11.22	ZNF438, ZEB1-AS1	rs11008355-G		5E-7	(EA)	0.235	unit increase	Affymetrix [at least 2696785] (imputed)	N
824	chr10	31412560	31412561	rs11008355	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10p11.22	ZNF438, ZEB1-AS1	rs11008355-G		1E-7		0.219	unit increase	Affymetrix [at least 2696785] (imputed)	N
824	chr10	31412560	31412561	rs11008355	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p11.22	ZNF438, ZEB1-AS1	rs11008355-G		1E-8		0.168	unit increase	Affymetrix [at least 2696785] (imputed)	N
824	chr10	31415105	31415106	rs793108	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p11.22	ZNF438	rs793108-T	NR	2E-7		0.0684252	[0.043-0.094] unit increase	Illumina [8380626] (imputed)	N
824	chr10	31415105	31415106	rs793108	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10p11.22	ZNF438	rs793108-T	0.5	8E-6	(EA)	0.06843	[0.038-0.099] unit increase	Illumina [8380626] (imputed)	N
824	chr10	31415105	31415106	rs793108	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p11.22	ZNF438	rs793108-T	0.5	6E-7	(EA)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
824	chr10	31415105	31415106	rs793108	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10p11.22	ZNF438	rs793108-T	0.49	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
824	chr10	31415105	31415106	rs793108	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10p11.22	intergenic	rs793108-A	0.51	6E-12		1.08		Illumina [161311]	N
824	chr10	31415105	31415106	rs793108	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10p11.22	ZNF438	rs793108-A	NR	3E-6		1.08	[1.06-1.09]	Illumina [465434]	N
824	chr10	31422576	31422577	rs1776631	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p11.22	NR	rs1776631-C	0.782	4E-8		0.00715359	[0.0046-0.0097] unit decrease	NR [9732723] (imputed)	N
825	chr10	31461598	31461599	rs1148233	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	10p11.22	intergenic	rs1148233-?		9E-6	(DI)	8.86	[4.61-13.11] unit increase	Illumina [693128]	N
825	chr10	31465896	31465897	rs117764890	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	10p11.22		rs117764890-C	NR	6E-6		3.4188	[2.89-3.95]	Illumina [7225561] (imputed)	N
825	chr10	31483431	31483432	rs1250309	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p11.22	NR	rs1250309-?	NR	7E-6	(AA)	10.35	[9.12-11.58]	Illumina [905956]	N
825	chr10	31495973	31495974	rs1250307	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	10p11.22	intergenic	rs1250307-A	0.01	4E-6		0.68	[0.39-0.97] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
825	chr10	31512097	31512098	rs2484992	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	10p11.22	intergenic	rs2484992-C	0.01	5E-6		0.68	[0.39-0.97] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
825	chr10	31515131	31515132	rs2484990	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	10p11.22	intergenic	rs2484990-C	0.01	4E-6		0.68	[0.39-0.97] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
826	chr10	31598380	31598381	rs34319926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p11.22	Intergenic	rs34319926-T	0.8583	3E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr10	31607214	31607215	rs3737178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10p11.22	NR	rs3737178-A	0.951246	1E-8		0.0102005	[0.0064-0.014] unit increase	Affymetrix [16582909] (imputed)	N
826	chr10	31607214	31607215	rs3737178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10p11.22	NR	rs3737178-A	0.951246	2E-9		0.0118507	[0.0076-0.0161] unit increase	Affymetrix [16582965] (imputed)	N
827	chr10	31763175	31763176	rs220040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10p11.22		rs220040-A	NR	4E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
828	chr10	31913889	31913890	rs11008551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	10p11.22		rs11008551-T	NR	3E-8		0.0609	[0.039-0.082] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
828	chr10	31965433	31965434	rs796131	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10p11.22		rs796131-C	NR	4E-8		0.409	[0.26-0.55] unit decrease	Affymetrix [509886] (imputed)	N
828	chr10	31968728	31968729	rs796127	24763700	Vinayagamoorthy N	2014-04-24	PLoS One	New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.	C-reactive protein levels	7,626 Korean ancestry individuals	903 Korean ancestry individuals	10p11.22	ARHGAP12	rs796127-T		3E-6		0.093	[NR] unit decrease	Affymetrix [1219546] (imputed)	N
828	chr10	31968782	31968783	rs10508765	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	10p11.22	ZEB1, ARHGAP12	rs10508765-A	0.8	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [8662096] (imputed)	N
828	chr10	31981384	31981385	rs115553536	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	10p11.22	Intergenic	rs115553536-T	0.94	2E-6	(AA)			Illumina [NR] (imputed)	N
829	chr10	31990622	31990623	rs7081678	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	10p11.22	ZEB1-AS1, ZEB1, KIF5B	rs7081678-A	0.079330886319744	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
829	chr10	31990622	31990623	rs7081678	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	10p11.22	ZEB1-AS1, ZEB1, KIF5B	rs7081678-A	0.079330886319744	2E-8		0.041659556	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
829	chr10	31990622	31990623	rs7081678	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	10p11.22	ZEB1	rs7081678-A	0.09	6E-6		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
829	chr10	32037229	32037230	rs11008626	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	10p11.22	ARHGAP12	rs11008626-T	0.71	2E-6				Affymetrix, Illumina [8002429] (imputed)	N
829	chr10	32054403	32054404	rs2808062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p11.22		rs2808062-?	NR	3E-8				NR [~ 8900000] (imputed)	N
829	chr10	32082657	32082658	rs10826995	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	10p11.22	ARHGAP12, ZEB1	rs10826995-T	0.71	1E-9		0.212	[0.15-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
829	chr10	32094003	32094004	rs7905471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10p11.22		rs7905471-?	NR	4E-13				NR [~ 8900000] (imputed)	N
830	chr10	32160518	32160519	rs7077016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.22		rs7077016-?	NR	4E-12				NR [~ 8900000] (imputed)	N
831	chr10	32264032	32264033	rs1775725	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10p11.22	NR	rs1775725-?		9E-6				Illumina [4322238] (imputed)	N
831	chr10	32267494	32267495	rs78862806	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p11.22		rs78862806-C	0.29	7E-12		6.85	z score increase	Affymetrix [9061022] (imputed)	N
831	chr10	32268325	32268326	rs2995526	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.22		rs2995526-G	0.29	9E-20		9.1	z score increase	Affymetrix [9061022] (imputed)	N
831	chr10	32268325	32268326	rs2995526	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p11.22		rs2995526-G	0.29	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
831	chr10	32270827	32270828	rs12261222	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p11.22	NR	rs12261222-G	0.2976	1E-8				NR [9056863] (imputed)	N
831	chr10	32274879	32274880	rs190595610	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	10p11.22	ARHGAP12, KIF5B	rs190595610-A	0.997	9E-9		0.253	[0.14-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
831	chr10	32280290	32280291	rs211257	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10p11.22	Intergenic	rs211257-C	NR	2E-8	(between families)	5.641	unit decrease	Affymetrix [up to 15107142] (imputed)	N
831	chr10	32284824	32284825	rs813412	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p11.22	ARHGAP12, KIF5B	rs813412-C		7E-6		0.202	unit increase	Affymetrix [at least 2696785] (imputed)	N
831	chr10	32284824	32284825	rs813412	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10p11.22	ARHGAP12, KIF5B	rs813412-C		3E-9		0.178	unit increase	Affymetrix [at least 2696785] (imputed)	N
831	chr10	32285941	32285942	rs806816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p11.22		rs806816-A	0.7498	5E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
831	chr10	32285941	32285942	rs806816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p11.22	Intergenic	rs806816-A	0.7498	2E-10	(MTAG)	0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
831	chr10	32289985	32289986	rs12264186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10p11.22		rs12264186-T	NR	2E-12		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
831	chr10	32289985	32289986	rs12264186	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10p11.22	intergenic	rs12264186-T	0.1806	7E-9		0.1845	[0.12-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
831	chr10	32290877	32290878	rs4272702	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p11.22	NR	rs4272702-A	0.2442	3E-10				NR [9056863] (imputed)	N
831	chr10	32292933	32292934	rs1251350	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10p11.22	NR	rs1251350-C	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
831	chr10	32309004	32309005	rs1775715	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	10p11.22	KIF5B	rs1775715-G	NR	5E-6		1.18	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
831	chr10	32360187	32360188	rs211315	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.22	KIF5B	rs211315-C	0.366622	5E-9	(128 ms)	0.0340367	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
831	chr10	32360187	32360188	rs211315	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.22	KIF5B	rs211315-C	0.366622	4E-8	(126 ms)	0.0314368	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
832	chr10	32387807	32387808	rs117623576	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10p11.22	KIF5B	rs117623576-T	0.09032	9E-6	(EA)			Illumina [4404269] (imputed)	N
832	chr10	32389423	32389424	rs2887830	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.22	EPC1	rs2887830-?	NR	9E-6	(uridine diphosphate)	0.17657386	[0.099-0.254] unit increase	Affymetrix [at least 2500000] (imputed)	N
832	chr10	32391108	32391109	rs2907794	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10p11.22	NR	rs2907794-A	0.2544	3E-10		0.0124	[0.0085-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
832	chr10	32413986	32413987	rs11008779	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	10p11.22	NR	rs11008779-?		3E-6		9.853	[6.47-13.23] unit increase	Illumina [~ 4900000] (imputed)	N
832	chr10	32461175	32461175	rs200528172	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	10p11.22	NR	rs200528172-?	0.798	3E-6		0.022	[0.012-0.032] unit increase	Affymetrix [27624732] (imputed)	N
832	chr10	32479348	32479349	rs3006704	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10p11.22	NR	rs3006704-T	0.36	4E-6		0.173	[0.10-0.25] unit increase	Illumina [~ 6600000] (imputed)	N
833	chr10	32549220	32549221	rs191654757	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	10p11.22		rs191654757-C	0.0046233	8E-6		0.219	[0.12-0.32] unit decrease	Affymetrix [15580782] (imputed)	N
833	chr10	32557591	32557592	rs3740237	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs3740237-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr10	32557591	32557592	rs3740237	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p11.22	NR	rs3740237-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
833	chr10	32557591	32557592	rs3740237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p11.22		rs3740237-?	NR	2E-14				NR [~ 8900000] (imputed)	N
833	chr10	32557591	32557592	rs3740237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	10p11.22	NR	rs3740237-C	0.1416	6E-18		0.0224	[0.017-0.027] unit increase	NR [~ 27400000] (imputed)	N
833	chr10	32590361	32590362	rs76164690	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10p11.22	EPC1	rs76164690-T	0.8587	7E-10		0.154	[0.1-0.2] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
833	chr10	32600053	32600054	rs149064226	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10p11.22	EPC1	rs149064226-T	NR	5E-8		0.0254277	[0.016-0.035] unit increase	Affymetrix [127266] (imputed)	N
833	chr10	32619571	32619572	rs11592754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10p11.22		rs11592754-?	NR	2E-27				NR [~ 8900000] (imputed)	N
833	chr10	32619571	32619572	rs11592754	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10p11.22	NR	rs11592754-C	0.14	4E-19		0.023	[0.018-0.028] unit increase	Affymetrix [2446094] (imputed)	N
833	chr10	32619571	32619572	rs11592754	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10p11.22	NR	rs11592754-C	0.14	5E-8				Affymetrix [2446094] (imputed)	N
833	chr10	32619571	32619572	rs11592754	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10p11.22	NR	rs11592754-C	0.142994	9E-25		0.0451778	[0.037-0.054] unit decrease	NR [19129689] (imputed)	N
833	chr10	32619571	32619572	rs11592754	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10p11.22	NR	rs11592754-A	0.8592	3E-18		0.0215	[0.017-0.026] unit decrease	NR [~ 27400000] (imputed)	N
833	chr10	32625017	32625018	rs143713361	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10p11.22	NR	rs143713361-T	0.022	8E-6		0.395	[0.22-0.57] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
833	chr10	32634971	32634972	rs2370759	22509378	Burri A	2012-04-11	PLoS One	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NA	10p11.22	EPC1	rs2370759-G	NR	2E-6	(Lubrication)	0.237	[0.14-0.33] unit increase	Illumina [2287762] (imputed)	N
834	chr10	32667120	32667121	rs11598602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10p11.22	EPC1	rs11598602-A	0.183931	8E-18		0.025133071	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
834	chr10	32667806	32667807	rs36083909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10p11.22	NR	rs36083909-G	0.882451	2E-11		0.020125	[0.014-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
834	chr10	32669070	32669074	rs10559647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10p11.22	EPC1	rs10559647-C	0.1957	2E-9		0.02726854	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
834	chr10	32669118	32669119	rs58095595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p11.22		rs58095595-?	NR	1E-10				NR [~ 8900000] (imputed)	N
834	chr10	32677120	32677121	rs4749723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.22	NR	rs4749723-C	0.807703	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
834	chr10	32686542	32686543	rs7084137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.22		rs7084137-?	NR	2E-8				NR [~ 8900000] (imputed)	N
835	chr10	32807860	32807861	rs10508774	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10p11.22	NR	rs10508774-?	NR	2E-6	(AA)	11.55	[10.2-12.9]	Illumina [905956]	N
835	chr10	32847961	32847962	rs2947080	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10p11.22	CCDC7	rs2947080-G	0.64	5E-10		0.41	[0.27-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
835	chr10	32847961	32847962	rs2947080	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10p11.22	CCDC7	rs2947080-G	0.6433	2E-8		0.389	[0.25-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
836	chr10	32946008	32946009	rs118167891	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	10p11.22	NR	rs118167891-T	0.02	2E-6		1.93	1.47-2.53	NR [8807005] (imputed)	N
836	chr10	32993267	32993268	rs7079041	25917933	Zai CC	2014-11-20	J Psychiatr Res	A genome-wide association study of suicide severity scores in bipolar disorder.	Suicide in bipolar disorder	959 European ancestry individuals	NA	10p11.22	CCDC7, C10orf68, ITGB1	rs7079041-A		2E-6	(suicide behaviour severity)	0.02383	[0.0067-0.0409] unit increase	Affymetrix, Illumina [2659407] (imputed)	N
838	chr10	33168214	33168215	rs183323229	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10p11.22	C10orf68	rs183323229-G	0.996	4E-6	(AA)	0.177	unit increase	Illumina [NR] (imputed)	N
839	chr10	33294774	33294775	rs11009175	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	10p11.22	ITGB1	rs11009175-A	0.17	5E-6		0.16	[NR] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
839	chr10	33302075	33302076	rs190312022	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10p11.22	Intergenic	rs190312022-?		2E-6		1.13	[1.07-1.19]	Illumina [7645193] (imputed)	N
839	chr10	33340557	33340558	rs140369471	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10p11.22	Intergenic	rs140369471-?		1E-6		2.98	[1.91-4.63]	Illumina [7645193] (imputed)	N
839	chr10	33373248	33373248	rs201415102	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	10p11.22	NR	rs201415102-TA	0.02178	8E-7		0.5075	[0.31-0.71] unit decrease	Illumina [10677593] (imputed)	N
839	chr10	33405086	33405087	rs7902627	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10p11.22	NR	rs7902627-C	0.135378764285714	8E-6	(IGP10)	0.1989	[0.11-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
839	chr10	33405574	33405575	rs2750055	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10p11.22		rs2750055-T	0.3487	7E-6	(East Asian)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
840	chr10	33426146	33426147	rs722988	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	10p11.22	NRP1	rs722988-C	0.367	3E-15		1.108		Illumina [715631] (imputed)	N
840	chr10	33426146	33426147	rs722988	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	10p11.22	NRP1	rs722988-C	0.367	3E-15		1.108		Illumina [715631] (imputed)	N
840	chr10	33448763	33448764	rs11009262	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10p11.22	NRP1	rs11009262-G	0.942683	1E-8		0.0234022	[0.015-0.031] unit increase	Affymetrix [NR] (imputed)	N
840	chr10	33461247	33461248	rs145952040	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs145952040-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
840	chr10	33468013	33468014	rs2506141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	10p11.22		rs2506141-C	0.49	3E-7				NR [13131314] (imputed)	N
840	chr10	33468013	33468014	rs2506141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.22		rs2506141-C	0.49	2E-34		12.22	z score increase	Affymetrix [9061022] (imputed)	N
840	chr10	33468013	33468014	rs2506141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p11.22		rs2506141-C	0.49	1E-13		7.4	z score increase	Affymetrix [9061022] (imputed)	N
840	chr10	33468013	33468014	rs2506141	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p11.22	NR	rs2506141-C	0.4552	2E-14				NR [9056863] (imputed)	N
840	chr10	33468013	33468014	rs2506141	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10p11.22		rs2506141-?	NR	5E-17				NR [9705931] (imputed)	N
840	chr10	33468123	33468124	rs2506142	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	10p11.22	NRP1	rs2506142-G	0.17	2E-9		1.06	[1.04-1.07]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
840	chr10	33472819	33472820	rs12415845	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p11.22	NR	rs12415845-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
840	chr10	33474750	33474751	rs12768811	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10p11.22	NR	rs12768811-?	NR	7E-6		0.01616	[0.0091-0.0232] unit decrease	Affymetrix [9658292] (imputed)	N
840	chr10	33475281	33475282	rs2228638	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	10p11.22	NRP1	rs2228638-A	0.096	2E-7		1.447	[1.239-1.69]	Illumina [516131]	N
840	chr10	33477429	33477430	rs2506148	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p11.22		rs2506148-C	0.36	4E-17		8.4	z score increase	Affymetrix [9061022] (imputed)	N
840	chr10	33478216	33478217	rs2253918	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p11.22	NRP1	rs2253918-T	0.3278125	3E-25	(NRP1, 5542_22_2)	0.26128432	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
840	chr10	33480712	33480713	rs2506149	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10p11.22	NRP1	rs2506149-T	0.358	7E-28	(Neuropilin-1, NRP1.3214.3.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
840	chr10	33481477	33481478	rs2243920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p11.22	NRP1	rs2243920-G	NR	2E-8		0.0167623	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
840	chr10	33481477	33481478	rs2243920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p11.22	NRP1	rs2243920-G	NR	3E-8		0.016588	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
840	chr10	33484265	33484266	rs2474725	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10p11.22	NR	rs2474725-C	NR	6E-6	(random effect)	1.0638298	NR	NR [6904914] (imputed)	N
840	chr10	33484576	33484577	rs2474724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p11.22	NRP1	rs2474724-T	NR	2E-8		0.0189852	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
840	chr10	33484576	33484577	rs2474724	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p11.22	NRP1	rs2474724-T	NR	2E-8		0.018812	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
840	chr10	33484576	33484577	rs2474724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs2474724-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
840	chr10	33485477	33485478	rs2247015	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10p11.22	NRP1	rs2247015-T	0.3953125	1E-14	(NRP1, 3214_3_2)	0.18627948	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
840	chr10	33487188	33487189	rs10827209	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.22	NR	rs10827209-?		7E-7				Illumina [~ 5140000] (imputed)	N
840	chr10	33489191	33489192	rs2247396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10p11.22	NRP1	rs2247396-A	0.396233	3E-9		0.01356068	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
840	chr10	33489191	33489192	rs2247396	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10p11.22	EPHA3	rs2247396-?		2E-10				NR [7428630] (imputed)	N
840	chr10	33489888	33489889	rs1555321	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10p11.22	NRP1	rs1555321-A	0.2613	3E-6		0.0297	[0.017-0.042] unit increase	NR [8041861] (imputed)	N
840	chr10	33490162	33490163	rs1555319	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRP1	5,364 Icelandic ancestry individuals	NA	10p11.22		rs1555319-G	0.3974	2E-25		0.194091	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
840	chr10	33490162	33490163	rs1555319	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p11.22	NR	rs1555319-G	0.4142	1E-17				NR [9056863] (imputed)	N
840	chr10	33491185	33491186	rs2474720	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRP1	5,346 Icelandic ancestry individuals	NA	10p11.22		rs2474720-C	0.3985	4E-40		0.229388	[0.2-0.26] unit decrease	Illumina [7506463] (imputed)	N
840	chr10	33491185	33491186	rs2474720	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10p11.22	NA	rs2474720-T		3E-11		0.0121769	[0.0086-0.0158] unit decrease	Illumina [13288253] (imputed)	N
840	chr10	33491185	33491186	rs2474720	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p11.22	NRP1	rs2474720-?		6E-11				NR [7428630] (imputed)	N
840	chr10	33495982	33495983	rs2474714	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10p11.22	NR	rs2474714-A	0.5666	9E-8		0.0097	[0.0062-0.0132] unit increase	NR [~ 27400000] (imputed)	N
840	chr10	33495982	33495983	rs2474714	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10p11.22	NR	rs2474714-A	0.5667	5E-8		0.0098	[0.0063-0.0133] unit increase	NR [~ 27400000] (imputed)	N
840	chr10	33503178	33503179	rs2506155	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10p11.22	intergenic	rs2506155-A	0.15	3E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
840	chr10	33545463	33545464	rs10827221	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10p11.22		rs10827221-?	NR	8E-6	(MLM)	0.1877251	[0.11-0.27] unit decrease	Illumina [~ 9000000] (imputed)	N
840	chr10	33551985	33551986	rs142515754	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10p11.22	NRP1	rs142515754-A	0.00848971067631567	8E-6	(G_Lactococcus_HB)	1.29714	[0.73-1.87] unit increase	Illumina [7711310] (imputed)	N
841	chr10	33559318	33559319	rs10827226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs10827226-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
841	chr10	33559318	33559319	rs10827226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p11.22		rs10827226-?	NR	9E-10				NR [~ 8900000] (imputed)	N
841	chr10	33563892	33563893	rs2243668	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	10p11.22	intergenic	rs2243668-G	0.909	9E-6	(AA)	0.868	unit increase	Illumina [at least 5086170] (imputed)	N
841	chr10	33586398	33586399	rs10827231	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10p11.22		rs10827231-?	NR	2E-12				NR [9705931] (imputed)	N
841	chr10	33616036	33616037	rs2804497	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10p11.22	NR	rs2804497-?	NR	7E-7		0.02042	[0.012-0.028] unit decrease	Affymetrix [9658292] (imputed)	N
841	chr10	33636099	33636100	rs11350153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10p11.22		rs11350153-A	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
841	chr10	33636099	33636100	rs11350153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10p11.22		rs11350153-A	NR	5E-15		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
841	chr10	33647090	33647091	rs2804894	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10p11.22	NRP1	rs2804894-G	0.265169	2E-15		0.0173213	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
841	chr10	33647090	33647091	rs2804894	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10p11.22	NRP1	rs2804894-G	0.265162	5E-13		0.0162576	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
841	chr10	33657237	33657238	rs10827250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs10827250-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
841	chr10	33667277	33667278	rs10763930	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	10p11.22	NR	rs10763930-A	0.0188679	2E-6				Illumina [5378266] (imputed)	N
841	chr10	33672883	33672884	rs10827252	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p11.22	NA	rs10827252-A	0.4934	2E-10		0.0113	[0.0078-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
841	chr10	33676654	33676655	rs7079083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p11.22	Intergenic	rs7079083-A	0.7132	8E-12	(MTAG)	0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
841	chr10	33676654	33676655	rs7079083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10p11.22	Intergenic	rs7079083-A	0.7132	4E-11		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
841	chr10	33676654	33676655	rs7079083	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p11.22	NR	rs7079083-?	NR	1E-7		5.296	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
842	chr10	33708149	33708150	rs17230787	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10p11.22	Intergenic	rs17230787-?	NR	4E-6		1.5612803	[NR]	Affymetrix [492217] (imputed)	N
842	chr10	33766735	33766736	rs17296631	34413389	Ruggiero D	2021-08-19	Sci Rep	Genetics of PlGF plasma levels highlights a role of its receptors and supports the link between angiogenesis and immunity.	Placenta growth factor levels	1,600 European ancestry individuals	468 European ancestry individuals	10p11.22		rs17296631-T	0.04	8E-9		0.065	[0.043-0.087] unit increase	Illumina [8281256] (imputed)	N
842	chr10	33786919	33786920	rs141877527	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	10p11.22	NRP1, LINC00838	rs141877527-G	0.013192445	1E-6		1.9389111	[1.480804376-2.538739234]	Illumina [10439017] (imputed)	N
842	chr10	33795912	33795913	rs2804864	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	10p11.22	NR	rs2804864-A	0.93	5E-6	(AA)	6.17	[3.62-8.72] bpm decrease	Illumina [at least 1100000] (imputed)	N
843	chr10	33846096	33846097	rs2605515	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	10p11.22		rs2605515-?	NR	8E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
843	chr10	33857194	33857195	rs4934609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs4934609-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
843	chr10	33857194	33857195	rs4934609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p11.22		rs4934609-?	NR	2E-9				NR [~ 8900000] (imputed)	N
843	chr10	33860514	33860515	rs4097319	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p11.22	NA	rs4097319-T	0.5641	4E-10		0.0107	[0.0074-0.014] unit increase	NR [~ 27400000] (imputed)	N
843	chr10	33877363	33877364	rs2167710	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Disease-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor effect)	2,799 European ancestry donors	NA	10p11.22		rs2167710-T	0.65	7E-9		1.5063658	[1.31144292433602-1.73026054289552]	Illumina [8515276] (imputed)	N
844	chr10	33969930	33969931	rs12762034	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs12762034-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
844	chr10	33969930	33969931	rs12762034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p11.22		rs12762034-?	NR	1E-14				NR [~ 8900000] (imputed)	N
844	chr10	33977848	33977849	rs71495039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10p11.22		rs71495039-C	NR	2E-10		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
844	chr10	33985433	33985434	rs113585475	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs113585475-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
844	chr10	33987328	33987329	rs34930419	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10p11.22	NA	rs34930419-T	0.968	6E-13		0.0394	[0.029-0.05] unit decrease	NR [~ 27400000] (imputed)	N
844	chr10	33997226	33997227	rs71495046	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10p11.22	NR	rs71495046-C	0.121	2E-10		0.0399	[0.028-0.052] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
844	chr10	34013506	34013507	rs12765914	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10p11.22	NA	rs12765914-T	0.0801	2E-13		0.0226	[0.017-0.029] unit increase	NR [~ 27400000] (imputed)	N
844	chr10	34014434	34014435	rs71495049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10p11.22		rs71495049-A	NR	8E-11		0.0193	[0.013-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
844	chr10	34014434	34014435	rs71495049	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10p11.22	PARD3	rs71495049-G	0.916465	6E-12		0.0170656	[0.012-0.022] unit decrease	Affymetrix [12370749]	N
844	chr10	34015680	34015681	rs12411959	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10p11.22	PARD3	rs12411959-A	0.779096	2E-11		0.015565	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
844	chr10	34015680	34015681	rs12411959	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10p11.22	PARD3	rs12411959-A	0.779041	6E-10		0.0147206	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
844	chr10	34018729	34018730	rs36051838	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10p11.22	NR	rs36051838-C	0.0888	5E-8		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
844	chr10	34020425	34020426	rs34125516	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs34125516-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
844	chr10	34045190	34045191	rs7923266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs7923266-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
845	chr10	34088052	34088053	rs1412115	21682944	Alkelai A	2011-06-20	Int J Neuropsychopharmacol	DOCK4 and CEACAM21 as novel schizophrenia candidate genes in the Jewish population.	Schizophrenia	155 Jewish-Israeli ancestry cases and 176 Jewish-Israeli ancestry controls from 107 families	99 Arab-Israeli ancestry cases and 99 Arab-Israeli ancestry controls from 57 families	10p11.22	NRP1, PARD3	rs1412115-?	0.37	6E-6				Illumina [311517]	N
845	chr10	34100342	34100343	rs113755171	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	10p11.22	intergenic	rs113755171-T	0.011	3E-8	(YKL-40)	45.313	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
845	chr10	34143733	34143733	rs5784371	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	10p11.22		rs5784371-CA	NR	9E-6		8.0963	[4.61-11.59] unit decrease	Illumina [NR] (imputed)	N
845	chr10	34160763	34160764	rs17296943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs17296943-G	NR	2E-8		0.0224937	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
845	chr10	34160763	34160764	rs17296943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs17296943-G	NR	6E-9		0.0233464	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
845	chr10	34165698	34165699	rs1474921	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10p11.22	NR	rs1474921-A	0.38	2E-14		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
845	chr10	34165698	34165699	rs1474921	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10p11.22	NR	rs1474921-A	0.38	5E-8				Affymetrix [2446094] (imputed)	N
845	chr10	34166697	34166698	rs10763957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs10763957-T	NR	1E-12		0.0221743	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
845	chr10	34166697	34166698	rs10763957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs10763957-T	NR	3E-13		0.0227606	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
845	chr10	34166697	34166698	rs10763957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs10763957-T	NR	3E-10		0.0202576	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
845	chr10	34166697	34166698	rs10763957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10p11.22	NR	rs10763957-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
845	chr10	34166697	34166698	rs10763957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10p11.22		rs10763957-?	NR	2E-15				NR [~ 8900000] (imputed)	N
845	chr10	34167568	34167569	rs4934618	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10p11.22	NR	rs4934618-A	0.4201	9E-15		0.0142	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
845	chr10	34168089	34168090	rs1757471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs1757471-C	NR	2E-10		0.0178845	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
845	chr10	34168089	34168090	rs1757471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10p11.22	RPL23P11	rs1757471-C	NR	2E-10		0.0180232	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
845	chr10	34168089	34168090	rs1757471	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p11.22	NA	rs1757471-T	0.5081	6E-13		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
845	chr10	34168089	34168090	rs1757471	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10p11.22	NR	rs1757471-T	0.5081	6E-13		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
845	chr10	34173111	34173112	rs79042534	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10p11.22	NR	rs79042534-A	0.01045	2E-8	(NIPSNAP1)	0.2833	NR unit increase	Illumina [1671387] (imputed)	N
845	chr10	34184062	34184063	rs1757476	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10p11.22	NR	rs1757476-?	NR	6E-10				Illumina [at least 7383741] (imputed)	N
846	chr10	34213498	34213499	rs7894891	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10p11.22	intergenic	rs7894891-G	NR	2E-6				Illumina [up to 11995908] (imputed)	N
846	chr10	34231029	34231030	rs224750	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	10p11.22	PARD3	rs224750-T	0.37	1E-6		0.21	[0.13-0.29] unit decrease	Illumina [5918868] (imputed)	N
846	chr10	34231274	34231275	rs7905537	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10p11.22	PARD3	rs7905537-A	0.75	8E-7	(quantitative)	1.85	[NR] HU increase	Illumina [499578]	N
846	chr10	34256802	34256803	rs1780437	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p11.22	NR	rs1780437-?	NR	4E-8				Illumina [7760689] (imputed)	N
846	chr10	34257611	34257612	rs1780436	21621269	Aragam N	2011-05-26	J Affect Disord	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 cases, 1,630 controls	NA	10p11.22	PARD3	rs1780436-?		3E-6				Perlegen [433556]	N
846	chr10	34257611	34257612	rs1780436	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Major depressive disorder	1,695 cases, 1,761 controls	NA	10p11.22	intergenic	rs1780436-?	NR	7E-6				Perlegen [1893617] (imputed)	N
846	chr10	34260634	34260635	rs61846062	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p11.22	NR	rs61846062-?	NR	3E-8				Illumina [7760689] (imputed)	N
846	chr10	34261105	34261106	rs10827317	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	10p11.22	NR	rs10827317-?	NR	5E-7		1.9607843	[1.52-2.56]	Illumina [9789995] (imputed)	N
846	chr10	34261278	34261279	rs58778359	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	10p11.22	NR	rs58778359-?	NR	6E-7		1.9607843	[1.49-2.5]	Illumina [9789995] (imputed)	N
846	chr10	34262845	34262846	rs148822459	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10p11.22	NR	rs148822459-?	NR	5E-9				Illumina [7760689] (imputed)	N
846	chr10	34263652	34263653	rs1510593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs1510593-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
846	chr10	34265233	34265234	rs224709	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	10p11.22	SSBP3	rs224709-?		1E-8				NR [7428630] (imputed)	N
846	chr10	34265233	34265234	rs224709	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	10p11.22	NR	rs224709-?		3E-8				NR [7428630] (imputed)	N
846	chr10	34305628	34305629	rs16934978	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Massiliomicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	10p11.22		rs16934978-A	0.0116123	2E-8		0.338445	[0.22-0.46] unit increase	Illumina [7980478] (imputed)	N
847	chr10	34408635	34408636	rs11009651	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10p11.22	NA	rs11009651-T		5E-8		0.01138	[0.0073-0.0155] unit decrease	Illumina [13288253] (imputed)	N
847	chr10	34414864	34414865	rs3004929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10p11.22	NR	rs3004929-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
847	chr10	34414864	34414865	rs3004929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10p11.22		rs3004929-?	NR	2E-8				NR [~ 8900000] (imputed)	N
847	chr10	34449465	34449466	rs138016380	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		10p11.22	PARD3	rs138016380-C	0.976	2E-6		0.044	[0.026-0.062] dioptres decrease	NR [5901671] (imputed)	N
847	chr10	34452071	34452072	rs2248375	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10p11.22		rs2248375-A	0.23	8E-12		6.83	z score increase	Affymetrix [9061022] (imputed)	N
847	chr10	34454453	34454454	rs16935156	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	10p11.22	PARD3	rs16935156-T	0.28	3E-6	(male)	0.0371	[0.022-0.052] unit decrease	Illumina [6380737] (imputed)	N
847	chr10	34461244	34461245	rs588838	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.22		rs588838-T	0.23	9E-23		9.82	z score increase	Affymetrix [9061022] (imputed)	N
847	chr10	34461244	34461245	rs588838	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10p11.22	NR	rs588838-T	0.2428	4E-12				NR [9056863] (imputed)	N
847	chr10	34465204	34465205	rs614299	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10p11.22		rs614299-T	0.23	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
847	chr10	34465204	34465205	rs614299	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10p11.22	NR	rs614299-T	0.2399	3E-11				NR [9056863] (imputed)	N
848	chr10	34480581	34480582	rs1274475	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10p11.22	PARD3	rs1274475-A	0.3922	8E-12		0.0168	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
848	chr10	34480581	34480582	rs1274475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10p11.22		rs1274475-?	NR	7E-14				NR [~ 8900000] (imputed)	N
848	chr10	34490853	34490854	rs647758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10p11.21		rs647758-?	NR	1E-8				NR [~ 8900000] (imputed)	N
848	chr10	34494170	34494171	rs11009678	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10p11.21	PARD3	rs11009678-?		2E-8				NR [7428630] (imputed)	N
848	chr10	34501232	34501234	rs758480150	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10p11.21	PARD3	rs758480150-CCT	0.9984	2E-6		1.6032	[0.94-2.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr10	34535020	34535021	rs1778871	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p11.21	PARD3	rs1778871-C	0.8811	6E-11		0.0191	[0.013-0.025] unit increase	Affymetrix [18391927] (imputed)	N
848	chr10	34566919	34566920	rs641162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10p11.21	Intergenic	rs641162-A	0.6141	5E-10	(MTAG)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
848	chr10	34566919	34566920	rs641162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10p11.21	Intergenic	rs641162-A	0.6137	8E-14	(MTAG)	0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
848	chr10	34568031	34568032	rs1765174	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10p11.21	Intergenic	rs1765174-C	0.3932	1E-9		0.0142	[0.0097-0.0187] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
848	chr10	34578732	34578733	rs610493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10p11.21		rs610493-?	NR	2E-10				NR [~ 8900000] (imputed)	N
848	chr10	34583634	34583635	rs2197012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10p11.21	Intergenic	rs2197012-A	0.3887	2E-12	(MTAG)	0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
848	chr10	34586688	34586689	rs2007655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10p11.21		rs2007655-T	0.4976	9E-10		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
849	chr10	34635528	34635529	rs12247156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10p11.21		rs12247156-T	NR	1E-8		0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
850	chr10	34738046	34738047	rs142712198	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p11.21	NR	rs142712198-?	NR	6E-6		4.533	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
850	chr10	34817987	34817988	rs563507	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	10p11.21	PARD3	rs563507-A	0.04	9E-6		2.0	[1.40-2.70]	Affymetrix [307944]	N
851	chr10	34889855	34889856	rs73267375	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10p11.21	NR	rs73267375-?	NR	8E-6		4.47	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
852	chr10	35023777	35023778	rs11009903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10p11.21		rs11009903-G	NR	3E-20		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
852	chr10	35024343	35024344	rs11009904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10p11.21		rs11009904-?	NR	4E-8				NR [~ 8900000] (imputed)	N
852	chr10	35051218	35051218	rs796709989	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p11.21	PARD3	rs796709989-CAG	0.7082	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
852	chr10	35058711	35058712	rs11009928	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10p11.21	PARD3	rs11009928-A	0.745474	8E-19		0.00528079	[0.0041-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
852	chr10	35060500	35060501	rs9418120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10p11.21		rs9418120-A	NR	3E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
853	chr10	35150363	35150364	rs7072591	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10p11.21	PARD3-AS1	rs7072591-A	0.555	4E-11		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
853	chr10	35171117	35171118	rs11010013	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10p11.21	PARD3	rs11010013-G	0.6928	1E-8		5.662	NR z score decrease	Illumina [26237160] (imputed)	N
854	chr10	35265567	35265568	rs186745002	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	10p11.21	NR	rs186745002-C		6E-6		0.6428	[0.36-0.92] SD units decrease	NR [10700000] (imputed)	N
854	chr10	35277227	35277228	rs2248300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10p11.21		rs2248300-T	0.569752	9E-14		0.016907899	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr10	35277227	35277228	rs2248300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10p11.21		rs2248300-T	0.56975	7E-13		0.016252719	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr10	35277227	35277228	rs2248300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.21	NR	rs2248300-T	0.594432	8E-13				Affymetrix, Illumina [19872809] (imputed)	N
854	chr10	35287649	35287650	rs17582416	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10p11.21	intergenic	rs17582416-G	0.35	2E-9		1.16	[NR]	Affymetrix, Illumina [635547] (imputed)	N
854	chr10	35295430	35295431	rs11010067	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.21	NR	rs11010067-G	0.3513	2E-8	(EA)	1.075212	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
854	chr10	35295430	35295431	rs11010067	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.21	NR	rs11010067-G	0.3513	6E-25	(EA)	1.1115612	[1.09-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
854	chr10	35295430	35295431	rs11010067	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.21	NR	rs11010067-G	0.3513	1E-26	(EA)	1.1415846	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
854	chr10	35295430	35295431	rs11010067	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10p11.21	CREM	rs11010067-G	0.346	2E-25		1.115	[1.082-1.148]	Affymetrix, Illumina [1230000] (imputed)	N
854	chr10	35299084	35299085	rs1131510	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	10p11.21	Intergenic	rs1131510-?		9E-6		1.748	[NR]	Affymetrix [492217] (imputed)	N
854	chr10	35360619	35360620	rs11010084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10p11.21	NR	rs11010084-G	0.403054	7E-15		0.015847	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
854	chr10	35386937	35386938	rs76606916	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	10p11.21	NR	rs76606916-G		9E-6		0.6358	[0.36-0.92] SD units decrease	NR [10700000] (imputed)	N
855	chr10	35466184	35466185	rs34779708	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10p11.21	CUL2, CREM, CCNY	rs34779708-?		6E-12				Illumina [9725440] (imputed)	N
855	chr10	35466184	35466185	rs34779708	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10p11.21	CUL2, CREM, CCNY	rs34779708-?		4E-14				Illumina [9560910] (imputed)	N
855	chr10	35466184	35466185	rs34779708	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10p11.21	CREM	rs34779708-?	NR	5E-29	(subset analysis)			Illumina [130052]	N
855	chr10	35466184	35466185	rs34779708	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10p11.21	NR	rs34779708-?	NR	2E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
855	chr10	35496467	35496468	rs75265869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10p11.21		rs75265869-C	NR	1E-10		0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
855	chr10	35517647	35517647	rs58000832	30228239	Wojcik GL	2018-09-18	MBio	Genome-Wide Association Study Reveals Genetic Link between Diarrhea-Associated Entamoeba histolytica Infection and Inflammatory Bowel Disease.	Diarrhoea-associated Entamoeba histolytica infection	170 Bangladeshi ancestry cases, 574 Bangladeshi ancestry controls	NA	10p11.21	CCNY, CREM	rs58000832-C	NR	6E-9		2.45	[1.83-3.29]	Illumina [6703908] (imputed)	N
855	chr10	35518028	35518029	rs11010134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10p11.21		rs11010134-?	NR	6E-11				NR [~ 8900000] (imputed)	N
856	chr10	35529113	35529114	rs6481946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10p11.21		rs6481946-?	NR	3E-29				NR [~ 8900000] (imputed)	N
856	chr10	35535694	35535695	rs12242110	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10p11.21	CREM	rs12242110-G	0.315	1E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [953241] (imputed)	N
856	chr10	35554053	35554054	rs12261843	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	10p11.21	CCNY	rs12261843-G	0.29	7E-10		1.07	[1.03-1.12]	Affymetrix, Illumina [~ 1100000] (imputed)	N
858	chr10	35819369	35819370	rs191051238	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	542 European ancestry cases, 7,146 European ancestry controls	NA	10p11.21	CCNY	rs191051238-C	0.0012	4E-8		13.2	[5.95-28.93]	Illumina [11310926] (imputed)	N
859	chr10	35918231	35918232	rs114088342	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10p11.21	NR	rs114088342-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
860	chr10	36060308	36060309	rs11010290	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	10p11.21	FZD8	rs11010290-?	NR	9E-6				Affymetrix [NR]	N
860	chr10	36066438	36066439	rs10764055	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	10p11.21	intergenic	rs10764055-?	NR	4E-7	(LDL)	0.23	[0.15-0.31] unit increase	Illumina [14948665] (imputed)	N
861	chr10	36227655	36227656	rs708437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10p11.21	NA	rs708437-A	0.8256	2E-9		0.0144	[0.0097-0.0191] unit increase	NR [~ 27400000] (imputed)	N
861	chr10	36231165	36231166	rs708439	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10p11.21	NR	rs708439-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
861	chr10	36244408	36244409	rs10827565	27492634	Du Y	2016-08-01	Endocr Relat Cancer	Genetic associations with neuroendocrine tumor risk: results from a genome-wide association study.	Bronchial neuroendocrine tumor	128 European ancestry cases, 4,542 European ancestry controls	NA	10p11.21	intergenic	rs10827565-?	NR	1E-11		2.992	NR	Affymetrix [613218]	N
862	chr10	36313496	36313497	rs76726877	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10p11.21	FZD8	rs76726877-?	NR	4E-10	(African)			Affymetrix, Illumina [18800000] (imputed)	N
862	chr10	36313496	36313497	rs76726877	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10p11.21	FZD8	rs76726877-T	0.014	4E-6	(African)	9.139	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
862	chr10	36385530	36385531	rs10827597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10p11.21	NR	rs10827597-T	0.600168	7E-14		0.014129	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
863	chr10	36454874	36454875	rs75347344	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	10p11.21	NR	rs75347344-T	0.92	8E-6		1.31	[NR]	Affymetrix [87696888] (imputed)	N
863	chr10	36459986	36459987	rs74888921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10p11.21		rs74888921-A	NR	1E-10		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
863	chr10	36459986	36459987	rs74888921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10p11.21		rs74888921-A	0.502061	2E-10		0.014131088	[0.0098-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
863	chr10	36461566	36461567	rs1451193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.21	NR	rs1451193-A	0.462453	4E-15				Affymetrix, Illumina [24332387] (imputed)	N
863	chr10	36461759	36461760	rs1451192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p11.21	NR	rs1451192-A	0.497598	4E-16		0.015094	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
863	chr10	36461759	36461760	rs1451192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.21	NR	rs1451192-A	0.463864	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
863	chr10	36461759	36461760	rs1451192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10p11.21	NR	rs1451192-A	0.497321	1E-13		0.013674	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
863	chr10	36461759	36461760	rs1451192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10p11.21		rs1451192-?	NR	2E-12				NR [~ 8900000] (imputed)	N
863	chr10	36461955	36461956	rs66468814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p11.21		rs66468814-C	0.501493	6E-13		0.015947314	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
863	chr10	36461955	36461956	rs66468814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10p11.21		rs66468814-C	0.501517	4E-11		0.014700655	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
863	chr10	36469619	36469633	rs376402615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10p11.21		rs376402615-C	NR	2E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
863	chr10	36473043	36473044	rs899865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10p11.21	NR	rs899865-C	0.384767	6E-12				Affymetrix, Illumina [24653286] (imputed)	N
863	chr10	36473043	36473044	rs899865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10p11.21	NR	rs899865-T	0.600172	1E-8		0.00518571	[0.0034-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
863	chr10	36473043	36473044	rs899865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10p11.21	NR	rs899865-T	0.59973	1E-8		0.0068649	[0.0043-0.0094] unit increase	Affymetrix [16585854] (imputed)	N
863	chr10	36543313	36543314	rs1219603	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	10p11.21	intergenic	rs1219603-?	0.15	6E-6	(adjusted for CYP2C19*2)	0.18	NR unit increase	Illumina [5009928] (imputed)	N
864	chr10	36634123	36634124	rs2796793	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10p11.21		rs2796793-G	0.534	2E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
864	chr10	36634123	36634124	rs2796793	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10p11.21	NR	rs2796793-A	0.452	2E-8		0.014481352	[0.0095-0.0195] unit increase	NR [~ 10000000] (imputed)	N
864	chr10	36638424	36638425	rs1631619	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	10p11.21	ANKRD30A, PCAT5	rs1631619-G	0.3804	9E-7		5.0		Affymetrix [757439]	N
864	chr10	36644731	36644732	rs2796808	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10p11.21	NR	rs2796808-G	0.491	1E-10		0.00703672	[0.0049-0.0092] unit increase	NR [9732723] (imputed)	N
864	chr10	36648039	36648040	rs1779876	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	10p11.21	FZD8, ANKRD30A	rs1779876-?	0.10	3E-6	(Lipoprotein A)			Illumina [496032]	N
865	chr10	36821278	36821279	rs2503079	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10p11.21		rs2503079-G	0.38	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
865	chr10	36821278	36821279	rs2503079	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 45)	19,670 European ancestry individuals	NA	10p11.21		rs2503079-?	NR	3E-10				NR [9705931] (imputed)	N
866	chr10	36885920	36885921	rs1360573	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	10p11.21	FZD8, ANKRD30A	rs1360573-A	0.752	2E-6	(P. gingi)	2.75	[1.78-4.26]	Affymetrix [~ 2500000] (imputed)	N
866	chr10	36894265	36894266	rs2483001	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1417 sp003531055 abundance in stool	5,959 Finnish ancestry individuals	NA	10p11.21		rs2483001-A	0.239009	5E-8		0.0717234	[0.046-0.097] unit decrease	Illumina [7980478] (imputed)	N
866	chr10	36905465	36905466	rs75248127	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (fucosyllacto-N-hexaose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10p11.21		rs75248127-?	NR	1E-9				Illumina [1128286]	N
867	chr10	36994430	36994431	rs76177215	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eremiobacterota abundance in stool	5,959 Finnish ancestry individuals	NA	10p11.21		rs76177215-T	0.0507972	7E-9		0.0396158	[0.026-0.053] unit decrease	Illumina [7980478] (imputed)	N
867	chr10	37037407	37037408	rs7897310	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	10p11.21	NR	rs7897310-A	NR	5E-6				NR [NR] (imputed)	N
867	chr10	37037407	37037408	rs7897310	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	10p11.21	NR	rs7897310-A	NR	1E-6				NR [NR] (imputed)	N
867	chr10	37037407	37037408	rs7897310	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	10p11.21	PCAT5, ANKRD30A	rs7897310-A	NR	4E-6			[NR]	NR [NR] (imputed)	N
867	chr10	37037407	37037408	rs7897310	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	10p11.21	NR	rs7897310-A	0.3245	4E-6		0.1306	[0.075-0.186] unit increase	NR [NR] (imputed)	N
867	chr10	37043449	37043450	rs4468298	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	10p11.21	PCAT5, ANKRD30A	rs4468298-T	0.39	2E-6	(female)	0.1053	[0.062-0.149] unit increase	NR [NR] (imputed)	N
867	chr10	37043449	37043450	rs4468298	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	10p11.21	PCAT5, ANKRD30A	rs4468298-T	0.39	2E-6	(female)	0.1053	[0.062-0.149] unit increase	NR [NR] (imputed)	N
867	chr10	37071612	37071613	rs75348186	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	10p11.21	NR	rs75348186-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.9	[NR]	Affymetrix, Illumina [NR] (imputed)	N
867	chr10	37087170	37087171	rs10764112	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	10p11.21	PCAT5, ANKRD30A	rs10764112-T	0.853	2E-6		0.2086	[0.12-0.3] unit decrease	NR [NR] (imputed)	N
867	chr10	37087170	37087171	rs10764112	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	10p11.21	PCAT5, ANKRD30A	rs10764112-T	0.851	2E-6		0.2149	[0.13-0.3] unit decrease	NR [NR] (imputed)	N
868	chr10	37169294	37169295	rs1192691	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	10p11.21	NAMPTL, ANKRD30A	rs1192691-C	0.54	3E-8		1.23	[1.05-1.43]	Illumina [710714]	N
869	chr10	37336588	37336589	rs188172955	30079052	Rujescu D	2018-07-20	Front Neurol	Genome-Wide Association Study in Vestibular Neuritis: Involvement of the Host Factor for HSV-1 Replication.	Vestibular neuritis	131 European ancestry cases, 2,609 German ancestry controls	NA	10p11.21	ANKRD30A	rs188172955-A	0.017	1E-9		5.697	[3.242-10.013]	Affymetrix, Illumina [7813927] (imputed)	N
870	chr10	37390609	37390610	rs1200921	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p11.21	NR	rs1200921-A	0.4634	6E-6	(EA)	0.0289	[0.016-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
870	chr10	37404665	37404666	rs146752254	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	10p11.21	NR	rs146752254-T		4E-6		0.4631	[0.26-0.66] SD units increase	NR [10700000] (imputed)	N
871	chr10	37508449	37508450	rs1148259	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	10p11.21	ANKRD30A	rs1148259-?	0.42	3E-9	(SM)			Affymetrix [187454]	N
871	chr10	37534058	37534059	rs1148267	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	10p11.21	NR	rs1148267-T		5E-6		0.4479	[0.25-0.64] SD units increase	NR [10700000] (imputed)	N
871	chr10	37559579	37559580	rs1200821	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	10p11.21	ANKRD30A	rs1200821-?	0.47	6E-6	(MCH)			Affymetrix [70897]	N
871	chr10	37592537	37592538	rs7100025	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	10p11.21	ANKRD30A	rs7100025-G	0.34	8E-11				Illumina [7347414] (imputed)	N
872	chr10	37681072	37681073	rs10764131	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	10p11.21	VN1R53P	rs10764131-G	0.856	8E-6	(Mean vigilance)	0.1912	[0.11-0.27] unit decrease	Affymetrix [8042262] (imputed)	N
872	chr10	37684563	37684564	rs2505682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.21	ZNF248	rs2505682-?	NR	9E-7	(TAG 54:2)	0.2524054	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
872	chr10	37684563	37684564	rs2505682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.21	ZNF248	rs2505682-?	NR	6E-7	(DAG 36:2)	0.25847995	[0.16-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
872	chr10	37684563	37684564	rs2505682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10p11.21	ZNF248	rs2505682-?	NR	1E-6	(TAG 52:2)	0.24962853	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
872	chr10	37687075	37687076	rs112817646	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10p11.21	ANKRD30A	rs112817646-A	NR	1E-8		1.42197	[0.94-1.9] unit increase	Illumina [NR] (imputed)	N
872	chr10	37689062	37689063	rs4934855	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10p11.21	intergenic	rs4934855-A	0.979	1E-6		0.121	[0.072-0.17] unit decrease	Affymetrix [7947838] (imputed)	N
872	chr10	37693540	37693541	rs2505689	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	10p11.21	NR	rs2505689-T	NR	1E-6		1.2273	NR	Illumina [at least 560000] (imputed)	N
872	chr10	37702434	37702435	rs2490302	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10p11.21	intergenic	rs2490302-A	0.9137	6E-11		0.0221	[0.015-0.029] unit increase	Affymetrix [18391927] (imputed)	N
873	chr10	37802531	37802532	rs2475206	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	10p11.21	NR	rs2475206-A	0.5	8E-6		0.91	NR	Affymetrix, Illumina [6957974] (imputed)	N
873	chr10	37819354	37819355	rs7082049	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.21	NR	rs7082049-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
873	chr10	37819708	37819709	rs10827791	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.21	NR	rs10827791-?		2E-6	(African)			Illumina [~ 5140000] (imputed)	N
873	chr10	37819708	37819709	rs10827791	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.21	NR	rs10827791-?		2E-6	(African)			Illumina [~ 5140000] (imputed)	N
873	chr10	37819943	37819944	rs11011237	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.21	NR	rs11011237-?		2E-7	(African)			Illumina [~ 5140000] (imputed)	N
873	chr10	37835653	37835654	rs17653445	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	10p11.21	RET	rs17653445-G	0.16	5E-10		1.67	[NR]	Illumina [6162479] (imputed)	N
873	chr10	37837512	37837513	rs10827797	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10p11.21	NR	rs10827797-?		7E-6	(African)			Illumina [~ 5140000] (imputed)	N
873	chr10	37874449	37874450	rs201796240	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	10p11.21	NR	rs201796240-TC		5E-6		0.133	[0.076-0.19] SD units increase	NR [10700000] (imputed)	N
874	chr10	37939640	37939641	rs72789860	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.21	NR	rs72789860-G	NR	1E-6		1.2469	NR	Illumina [at least 560000] (imputed)	N
874	chr10	37970845	37970850	rs71007656	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Extrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	10p11.21	ANKRD30A, ZNF248	rs71007656-C	0.49	7E-11		0.5914	[0.41-0.77] unit increase	Affymetrix, Illumina [~ 7400000] (imputed)	N
874	chr10	37982096	37982097	rs7474896	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	10p11.21	ZNF248	rs7474896-T	0.14	9E-7		1.46	[1.25-1.69]	Illumina [457251]	N
875	chr10	38059072	38059073	rs182423331	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.21	NR	rs182423331-T	NR	4E-7		1.2128	NR	Illumina [at least 560000] (imputed)	N
875	chr10	38064068	38064069	rs10508861	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	10p11.21	NR	rs10508861-A	0.2505	7E-13		0.2521	[0.18-0.32] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
876	chr10	38164763	38164764	rs117932856	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	10p11.21	NR	rs117932856-A	0.04	6E-18		0.7878	[0.61-0.97] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
876	chr10	38216362	38216363	rs2749558	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	10p11.21	NR	rs2749558-?	NR	2E-17				Affymetrix, Illumina [6210504] (imputed)	N
876	chr10	38218258	38218259	rs1005277	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Extrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	10p11.21	NR	rs1005277-A	0.3012	2E-14		0.5328	[0.4-0.67] unit increase	Illumina [5931171] (imputed)	N
876	chr10	38218258	38218259	rs1005277	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Extrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	10p11.21	ZNF248, ZNF25	rs1005277-A	0.28	1E-13		0.7366	[0.54-0.93] unit increase	Affymetrix, Illumina [~ 7400000] (imputed)	N
876	chr10	38264221	38264222	rs72791791	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.21	NR	rs72791791-G	NR	8E-8		0.8195	NR	Illumina [at least 560000] (imputed)	N
877	chr10	38388576	38388577	rs72793759	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.1	NR	rs72793759-G	NR	2E-8		0.8115	NR	Illumina [at least 560000] (imputed)	N
877	chr10	38393931	38393931	rs143072280	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p11.1	NR	rs143072280-TTTTC	0.3518	9E-7	(EA)	0.0342	[0.02-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
878	chr10	38458992	38458993	rs55904726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10p11.1	NR	rs55904726-G	NR	2E-9		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
878	chr10	38492759	38492760	rs59623126	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.1	NR	rs59623126-G	NR	3E-7		1.2054	NR	Illumina [at least 560000] (imputed)	N
878	chr10	38523625	38523626	rs2384736	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p11.1	NR	rs2384736-A	0.3687	1E-6	(EA)	0.0319	[0.019-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
879	chr10	38585910	38585910	rs377599840	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	10p11.1		rs377599840-?	NR	4E-6		0.4730866	[0.27-0.67] unit increase	Illumina [9906551] (imputed)	N
879	chr10	38585910	38585910	rs377599840	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	10p11.1		rs377599840-?	NR	5E-6		0.5015996	[0.29-0.72] unit increase	Illumina [9901720] (imputed)	N
879	chr10	38592779	38592780	rs150245813	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10p11.1	NR	rs150245813-T	NR	8E-9		0.7959	NR	Illumina [at least 560000] (imputed)	N
879	chr10	38627833	38627834	rs2754412	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p11.1	NR	rs2754412-G	0.4603	6E-7	(EA)	0.0312	[0.019-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
879	chr10	38651913	38651914	rs71529004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10p11.1	NR	rs71529004-T	0.409827	1E-10		0.013048	[0.0091-0.017] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
879	chr10	38654931	38654932	rs138689893	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	10p11.1	HSD17B7P2	rs138689893-T	0.0223	8E-6		0.5182	[0.29-0.75] unit decrease	Illumina [up to 38043574] (imputed)	N
880	chr10	38759552	38759553	rs11498342	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	10p11.1	LOC399744	rs11498342-?	NR	2E-6		0.216	[0.13-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
880	chr10	38761237	38761238	rs180858466	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10p11.1	NR	rs180858466-?	NR	3E-6	(Japanese)	0.8521	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
881	chr10	38887299	38887300	rs12779388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10p11.1		rs12779388-C	0.401008	6E-9		0.014602822	[0.0097-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
882	chr10	38984148	38984149	rs1840780	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	10p11.1	SLC9B1P3	rs1840780-?	NR	1E-7				NR [3144808] (imputed)	N
883	chr10	39067072	39067073	rs12415367	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	10p11.1		rs12415367-?	NR	8E-6		0.6102796	[0.34-0.88] unit decrease	Illumina [9906551] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	5E-8	(216 ms)	0.0601252	[0.037-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	5E-8	(212 ms)	0.0596857	[0.037-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	4E-8	(214 ms)	0.0604746	[0.038-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	4E-8	(196 ms)	0.060463	[0.038-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	3E-8	(210 ms)	0.0611054	[0.038-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	3E-8	(208 ms)	0.0628453	[0.04-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39078390	39078391	rs12777211	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10p11.1	LINC00999	rs12777211-T	0.927119	3E-8	(198 ms)	0.0606065	[0.038-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
883	chr10	39149976	39149977	rs11146838	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10p11.1	NR	rs11146838-T	0.4416	1E-6	(EA)	0.0312	[0.019-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
908	chr10	42389280	42389281	rs76731728	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10q11.21		rs76731728-?	NR	4E-6	(endometrioid)	1.95		Illumina [11595112] (imputed)	N
911	chr10	42796711	42796712	rs537750491	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q11.21	intergenic	rs537750491-A	5.0E-4	7E-20		6.0784	[4.77-7.38] mmHg increase	Affymetrix [NR] (imputed)	N
912	chr10	42875756	42875756	rs141905319	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	10q11.21	NR	rs141905319-I	NR	6E-7		1.258	NR	Illumina [at least 560000] (imputed)	N
912	chr10	42917475	42917476	rs2489715	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA	10q11.21	NR	rs2489715-?	NR	8E-7	(FDR adjusted)			Illumina [671038]	N
912	chr10	42976845	42976846	rs558610964	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q11.21	intergenic	rs558610964-A	5.0E-4	1E-38		17.1975	[14.61-19.79] mmHg increase	Affymetrix [NR] (imputed)	N
913	chr10	43003047	43003048	rs481331	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	10q11.21	ZNF37BP, ZNF33B	rs481331-?		1E-6	(Additive)	1.5	[1.30-1.70]	Illumina [5600610] (imputed)	N
913	chr10	43096880	43096881	rs143073646	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q11.21	ZNF33B	rs143073646-C	0.0018	3E-44		23.4518	[20.16-26.75] mmHg increase	Affymetrix [NR] (imputed)	N
914	chr10	43237217	43237218	rs149737732	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q11.21	NR	rs149737732-C	0.043	7E-6		0.372879	[0.21-0.54] unit decrease	Illumina [~ 6600000] (imputed)	N
915	chr10	43267660	43267661	rs117754941	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	10q11.21	BMS1	rs117754941-T	0.0145	7E-6		0.1911	[0.11-0.27] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
915	chr10	43340661	43340662	rs2795502	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q11.21	RP11-124O11.1	rs2795502-G	0.1457286	1E-14	(EA, Proto-oncogene tyrosine-protein kinase receptor Ret)	0.4496	[0.34-0.56] unit increase	Affymetrix [509946]	N
915	chr10	43341104	43341105	rs2142991	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	10q11.21	BMS1	rs2142991-?	0.17	3E-7		1.3	[1.18-1.44]	Illumina [531451]	N
915	chr10	43352893	43352894	rs2795507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.21	RET	rs2795507-C	0.796	1E-19	(Proto-oncogene tyrosine-protein kinase receptor Ret, RET.3220.40.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
915	chr10	43355639	43355640	rs58804349	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q11.21	NR	rs58804349-A	0.128	5E-6		0.234778	[0.13-0.34] unit decrease	Illumina [~ 6600000] (imputed)	N
916	chr10	43387365	43387366	rs3121280	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RET	5,365 Icelandic ancestry individuals	NA	10q11.21		rs3121280-C	0.1898	4E-48		0.338264	[0.29-0.38] unit increase	Illumina [7506463] (imputed)	N
916	chr10	43444533	43444534	rs2506028	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q11.21	Intergenic	rs2506028-G	0.4166667	2E-11	(EA, Proto-oncogene tyrosine-protein kinase receptor Ret)	0.2874	[0.2-0.37] unit decrease	Affymetrix [509946]	N
917	chr10	43522457	43522458	rs1864397	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q11.21	GALNACT-2	rs1864397-?	NR	6E-6	(sorbitol)	0.27741915	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
917	chr10	43559389	43559390	rs144432435	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	10q11.21	RET	rs144432435-T	0.01	6E-7	(conditioned on rs2505994)	3.734	[NR]	Illumina [6162479] (imputed)	N
917	chr10	43568886	43568887	rs2505994	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	10q11.21	RET	rs2505994-T	0.23	2E-101		5.3	[NR]	Illumina [6162479] (imputed)	N
917	chr10	43570924	43570925	rs2505998	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	10q11.21	RET	rs2505998-A	0.48	4E-43	(East Asian)	3.57	[2.94-4.35]	Affymetrix, Illumina [at least 6512116] (imputed)	N
917	chr10	43570924	43570925	rs2505998	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	10q11.21	RET	rs2505998-A	0.22	1E-28	(European)	4.17	[3.23-5.26]	Affymetrix, Illumina [at least 6512116] (imputed)	N
917	chr10	43582055	43582056	rs2435357	30031151	Virtanen VB	2018-07-18	Eur J Med Genet	Noncoding RET variants explain the strong association with Hirschsprung disease in patients without rare coding sequence variant.	Hirschsprung disease	68 European ancestry cases, 386 European ancestry controls	NA	10q11.21	RET	rs2435357-?	NR	3E-21		23.12		Illumina [8432870] (imputed)	N
917	chr10	43592808	43592809	rs74400468	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	10q11.21	RET	rs74400468-G	0.97	1E-6				Illumina [NR] (imputed)	N
917	chr10	43593042	43593043	rs2505535	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q11.21	RET	rs2505535-G	0.72671875	4E-56	(RET, 3220_40_2)	0.4138471	[0.36-0.46] unit increase	Illumina [> 1000000] (imputed)	N
917	chr10	43593042	43593043	rs2505535	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q11.21	RET	rs2505535-A	0.2719033	3E-19	(Proto-oncogene tyrosine-protein kinase receptor Ret)	0.4312	[0.34-0.52] unit decrease	Affymetrix [509946]	N
917	chr10	43595967	43595968	rs1800858	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RET	5,365 Icelandic ancestry individuals	NA	10q11.21		rs1800858-A	0.2716	5E-89		0.404347	[0.36-0.44] unit decrease	Illumina [7506463] (imputed)	N
917	chr10	43605901	43605902	rs1864401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q11.21		rs1864401-G	0.587702	2E-8		0.0154935	[0.01-0.021] unit decrease	Illumina [13479924] (imputed)	N
917	chr10	43606855	43606856	rs9282834	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	10q11.21	RET	rs9282834-A	0.03	4E-14	(conditioned on rs2435357, East Asian)	20.3	9.31-44.4	Affymetrix, Illumina [at least 6512116] (imputed)	N
917	chr10	43610365	43610366	rs1864400	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	10q11.21	RET, CSGALNACT2, RASGEF1A	rs1864400-?	NR	6E-19				Illumina [757260]	N
917	chr10	43612608	43612609	rs2742234	19196962	Garcia-Barcelo MM	2009-02-05	Proc Natl Acad Sci U S A	Genome-wide association study identifies NRG1 as a susceptibility locus for Hirschsprung's disease.	Hirschsprung disease	181 Chinese ancestry cases, 346 Chinese ancestry controls	190 Chinese ancestry cases, 510 Chinese ancestry controls	10q11.21	RET, GALNACT-2, RASGEF1A	rs2742234-T	NR	4E-18				Affymetrix [293836]	N
917	chr10	43624832	43624833	rs2435355	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	10q11.21	RET	rs2435355-C	0.195	4E-8		0.036	[-0.14628-0.21828] unit decrease	Illumina [5961480] (imputed)	N
917	chr10	43624832	43624833	rs2435355	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	58,784 Japanese ancestry males	NA	10q11.21	RET	rs2435355-C	0.195	3E-7		0.038	[-0.1972-0.2732] unit decrease	Illumina [6108828] (imputed)	N
917	chr10	43642809	43642810	rs3004212	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSGALNACT2	5,347 Icelandic ancestry individuals	NA	10q11.21		rs3004212-T	0.3298	2E-105		0.384541	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
917	chr10	43642809	43642810	rs3004212	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10q11.21	CSGALNACT2	rs3004212-G	0.73	3E-7		1.07	[1.04-1.10]	Illumina [161311]	N
917	chr10	43643465	43643466	rs2435349	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.21	CSGALNACT2	rs2435349-G	0.273	2E-12	(Chondroitin sulfate N-acetylgalactosaminyltransferase 2, CSGALNACT2.10772.21.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
917	chr10	43644823	43644824	rs2505507	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q11.21	NR	rs2505507-T	0.2773	1E-8				NR [9056863] (imputed)	N
917	chr10	43644823	43644824	rs2505507	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	10q11.21	CSGALNACT2	rs2505507-?	NA	2E-8		1.53	[1-2.06] unit increase	Affymetrix [5541230] (imputed)	N
918	chr10	43678795	43678796	rs2435381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q11.21	CSGALNACT2	rs2435381-T	NR	8E-9		0.0198641	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
918	chr10	43682989	43682990	rs2435378	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q11.21	CSGALNACT2	rs2435378-T	0.66734375	6E-57	(CSGALNACT2, 10772_21_3)	0.41074768	[0.36-0.46] unit increase	Illumina [> 1000000] (imputed)	N
918	chr10	43693726	43693727	rs2435373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q11.21		rs2435373-A	NR	8E-10		0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
918	chr10	43693726	43693727	rs2435373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.21		rs2435373-?	NR	2E-8				NR [~ 8900000] (imputed)	N
918	chr10	43732335	43732336	rs2505547	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q11.21		rs2505547-A	0.29	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
918	chr10	43736573	43736574	rs2460546	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	10q11.21	RASGEF1A	rs2460546-A	NR	4E-6		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
918	chr10	43738331	43738332	rs2503855	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q11.21		rs2503855-G	0.29	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
918	chr10	43743088	43743088	rs35312285	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q11.21	NR	rs35312285-CA	0.362129	5E-8		0.0388585	[0.025-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
918	chr10	43746081	43746082	rs72783250	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q11.21		rs72783250-?	NR	3E-10				Affymetrix [NR] (imputed)	N
918	chr10	43748421	43748422	rs2505509	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q11.21	RASGEF1A	rs2505509-C	NR	5E-7		1.0548	NR	Affymetrix, Illumina [8278136] (imputed)	N
918	chr10	43749699	43749700	rs12769745	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10q11.21	RASGEF1A	rs12769745-A	0.28	2E-8				NR [> 9500000] (imputed)	N
918	chr10	43755753	43755754	rs28461806	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	RASGEF1A	rs28461806-G	0.049	5E-8	(MCP1 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
918	chr10	43755753	43755754	rs28461806	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	RASGEF1A	rs28461806-G	0.049	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
919	chr10	43814048	43814049	rs2503875	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	10q11.21	intergenic	rs2503875-A	NR	2E-7		1.66	[1.37-2.00]	Illumina [~ 300000]	N
919	chr10	43817858	43817859	rs10899789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q11.21		rs10899789-?	NR	2E-9				NR [~ 8900000] (imputed)	N
919	chr10	43830771	43830772	rs2253263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	10q11.21		rs2253263-T	0.63518	4E-9		0.0205241	[0.014-0.027] unit decrease	Illumina [13478792] (imputed)	N
919	chr10	43838341	43838342	rs2493661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	10q11.21	RASGEF1A, FXYD4	rs2493661-?	NR	2E-10		0.02428	[0.017-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
919	chr10	43842065	43842065	rs113266413	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10q11.21		rs113266413-?	NR	8E-6		0.7502525	[0.42-1.08] unit decrease	Illumina [9842460] (imputed)	N
919	chr10	43849826	43849827	rs10466239	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	10q11.21	FXYD4, RASGEF1A	rs10466239-T	0.073	7E-6			[NR]	Illumina [9250000] (imputed)	N
919	chr10	43874640	43874641	rs11238526	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q11.21	FXYD4	rs11238526-A	0.945171	1E-9		0.0246689	[0.017-0.033] unit decrease	NR [13737936] (imputed)	N
919	chr10	43874816	43874817	rs4519046	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	10q11.21	RET	rs4519046-A	0.18	3E-15		1.85	[NR]	Illumina [6162479] (imputed)	N
919	chr10	43883341	43883342	rs1126487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q11.21		rs1126487-A	NR	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
919	chr10	43888192	43888193	rs17153617	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q11.21	FXYD4	rs17153617-?	NR	7E-6	(TAG 56:2)	0.37123153	[0.21-0.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
919	chr10	43889204	43889205	rs56059584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q11.21		rs56059584-G	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
920	chr10	43969608	43969608	rs111998607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q11.21	ZNF487	rs111998607-CA	0.430711	6E-12		0.017118068	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
920	chr10	43969608	43969608	rs111998607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q11.21	NR	rs111998607-I	0.429098	5E-11		0.014714	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
920	chr10	43982584	43982585	rs5784601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q11.21	ZNF487	rs5784601-A	0.538105	6E-14		0.017392727	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
920	chr10	44008908	44008909	rs1856397	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q11.21	ZNF485	rs1856397-?	NR	3E-6	(TAG 54:8)	0.1935525	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
920	chr10	44026004	44026005	rs11238581	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	10q11.21	ZNF487	rs11238581-?	NR	4E-6		0.119	[0.06-0.178] unit increase	Illumina [6319684] (imputed)	N
920	chr10	44027355	44027356	rs3122231	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q11.21	NR	rs3122231-C	0.6586	6E-10		0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
921	chr10	44103894	44103895	rs10793451	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	10q11.21	ZNF485	rs10793451-T	NR	2E-6		7.14	[2.71-18.81]	Affymetrix [10993255] (imputed)	N
921	chr10	44107591	44107592	rs77767415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.21		rs77767415-?	NR	2E-12				NR [~ 8900000] (imputed)	N
921	chr10	44159711	44159712	rs3123668	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q11.21		rs3123668-G	0.45	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
922	chr10	44193354	44193355	rs10899858	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q11.21		rs10899858-A	0.11	7E-9		5.79	z score increase	Affymetrix [9061022] (imputed)	N
923	chr10	44338656	44338657	rs7918642	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q11.21	NR	rs7918642-?	NR	3E-13				Affymetrix [NR]	N
923	chr10	44367154	44367155	rs11238754	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q11.21		rs11238754-?	NR	5E-11		0.0124504	[0.0084-0.0165] unit decrease	Affymetrix [20259828] (imputed)	N
923	chr10	44367286	44367287	rs11238756	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q11.21	LINC00840	rs11238756-T	0.548848	2E-10		0.0118622	[0.0082-0.0155] unit decrease	NR [13737936] (imputed)	N
923	chr10	44367286	44367287	rs11238756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q11.21		rs11238756-?	NR	3E-11				NR [~ 8900000] (imputed)	N
924	chr10	44446216	44446217	rs11528455	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q11.21		rs11528455-C	0.41	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
924	chr10	44458713	44458714	rs898549	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q11.21	C10orf136	rs898549-A	0.278	6E-6	(Birth weight )	0.06	[NR] kg increase	Illumina [899892]	N
924	chr10	44480693	44480694	rs1870635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q11.21		rs1870635-T	NR	1E-15		0.0759	[0.057-0.095] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
924	chr10	44480693	44480694	rs1870635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q11.21		rs1870635-T	0.735090012	3E-8		0.08487379	[0.055-0.115] unit increase	Illumina [13427135] (imputed)	N
924	chr10	44480693	44480694	rs1870635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	10q11.21		rs1870635-T	NR	2E-11		0.0569	[0.04-0.074] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
924	chr10	44480810	44480811	rs1870634	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q11.21	LINC00841, C10orf142	rs1870634-?	NR	1E-28		0.0579307	[0.048-0.068] unit increase	Illumina [4804024] (imputed)	N
924	chr10	44480810	44480811	rs1870634	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q11.21	intergenic	rs1870634-T	0.3511	4E-24		0.06	[0.048-0.072] unit decrease	Affymetrix [at least 7947838] (imputed)	N
924	chr10	44480810	44480811	rs1870634	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	10q11.21	CXCL12	rs1870634-G	0.648	6E-13		1.06	[1.05-1.08]	Affymetrix [9149595] (imputed)	N
924	chr10	44480810	44480811	rs1870634	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q11.21	CXCL12	rs1870634-G	0.62	8E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
924	chr10	44480810	44480811	rs1870634	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q11.21	CXCL12	rs1870634-G	0.637485	6E-15		1.08	[1.06- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
924	chr10	44484295	44484296	rs55872338	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	10q11.21	NR	rs55872338-A	0.07199	3E-6		0.2741	[0.16-0.39] unit increase	Illumina [10677593] (imputed)	N
924	chr10	44496970	44496971	rs10793514	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q11.21	intergenic	rs10793514-T	0.355	5E-24		0.067	[0.053-0.081] unit decrease	Affymetrix [7947838] (imputed)	N
924	chr10	44524674	44524675	rs17154929	22628157	Levine AJ	2012-05-24	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia	1,287 European ancestry HIV-infected male individuals	NA	10q11.21	intergenic	rs17154929-T	NR	1E-7	(SPEED)			Illumina [~ 2500000] (imputed)	N
924	chr10	44541564	44541565	rs10508881	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	10q11.21	HNRNPA3P1, LOC100130539	rs10508881-A	0.405	4E-7		1.19	[1.11-1.27]	Illumina [580699]	N
924	chr10	44553582	44553583	rs2802493	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	10q11.21	CXCL12	rs2802493-C		2E-6		0.275	[NR] unit decrease	Illumina [1067955] (imputed)	N
924	chr10	44558308	44558309	rs2804029	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q11.21		rs2804029-T	0.47	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
924	chr10	44558308	44558309	rs2804029	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q11.21	NR	rs2804029-T	0.4963	9E-14				NR [9056863] (imputed)	N
925	chr10	44574774	44574775	rs149317160	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	10q11.21	NR	rs149317160-G	0.9837	2E-8		3.006	[1.96-4.06] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
925	chr10	44579061	44579062	rs1254531	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q11.21	intergenic	rs1254531-T	0.146	5E-7		0.0399	[0.024-0.055] unit decrease	NR [8041861] (imputed)	N
925	chr10	44606859	44606859	rs150430137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q11.21		rs150430137-TC	NR	5E-9		0.0486	[0.032-0.065] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
925	chr10	44673556	44673557	rs7919208	32675224	Thorball CW	2020-07-16	Haematologica	Genetic variation near CXCL12 is associated with susceptibility to HIV-related non-Hodgkin lymphoma.	Non-hodgkin's lymphoma in HIV infection	278 European ancestry cases, 1,924 European ancestry controls	NA	10q11.21		rs7919208-?	NR	5E-11		1.23		Illumina [6200000] (imputed)	N
925	chr10	44687779	44687780	rs11238907	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	10q11.21	LINC00841, C10orf142	rs11238907-G	0.115	2E-8				Affymetrix [28000000] (imputed)	N
926	chr10	44710929	44710930	rs1704221	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	10q11.21	CXCL12	rs1704221-G	0.892878	4E-10		1.12	[1.08-1.15]	NR [10903881] (imputed)	N
926	chr10	44733382	44733383	rs1619661	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	10q11.21	CXCL12	rs1619661-T	0.91	2E-8		2.55	[1.65-3.45] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
926	chr10	44745314	44745315	rs589655	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q11.21	CXCL12	rs589655-C	0.891214	2E-17		1.1	[1.08-1.13]	NR [8126035] (imputed)	N
926	chr10	44749853	44749854	rs11238956	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	10q11.21	C10orf142	rs11238956-T	NR	3E-7		1.0672358	[1.04-1.1]	NR [5921785] (imputed)	N
926	chr10	44753866	44753867	rs501120	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	10q11.21	CXCL12	rs501120-?	NR	2E-6		1.087	[1.05-1.14]	Illumina [575000] (imputed)	N
926	chr10	44753866	44753867	rs501120	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	10q11.21	CXCL12	rs501120-T	0.87	9E-8		1.33	[1.20-1.48]	Affymetrix [377857]	N
926	chr10	44757106	44757107	rs518594	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	10q11.21	ZNF32, CXCL12	rs518594-T	0.81	1E-12		1.07	[1.06-1.09]	Illumina [5167567] (imputed)	N
926	chr10	44775823	44775824	rs1746048	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	10q11.21	NR	rs1746048-C	0.87	1E-6		1.11	[1.07-1.15]	Affymetrix, Illumina [at least 119674] (imputed)	N
926	chr10	44775823	44775824	rs1746048	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	10q11.21	CXCL12	rs1746048-C	0.87	3E-10		1.09	[1.07-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
926	chr10	44775823	44775824	rs1746048	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	10q11.21	CXCL12	rs1746048-C	0.84	7E-9		1.17	[1.11-1.24]	Affymetrix [~ 2500000] (imputed)	N
926	chr10	44776309	44776310	rs1746049	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	10q11.21	CXCL12	rs1746049-C	0.72	2E-9		1.25	[NR]	Affymetrix [537798]	N
926	chr10	44777559	44777560	rs1657346	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q11.21	intergenic	rs1657346-C	0.1203	2E-24		0.0918	[0.074-0.109] unit decrease	NR [8041861] (imputed)	N
926	chr10	44783546	44783547	rs148502670	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q11.21	CXCL12	rs148502670-A	0.98546875	1E-6	(CXCL12, 3516_60_2)	0.47631693	[0.28-0.67] unit increase	Illumina [> 1000000] (imputed)	N
926	chr10	44797953	44797954	rs76838052	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	10q11.21	C10orf142	rs76838052-?		6E-7				Illumina [2668805]	N
926	chr10	44806005	44806006	rs146275433	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10q11.21	C10orf142	rs146275433-A	0.0257	9E-7		0.1541	[0.093-0.215] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
926	chr10	44814335	44814336	rs7082209	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (continuous)	244 cases, 225 controls		10q11.21	CXCL12	rs7082209-G		6E-6	(additive model)	2.563	[1.463-3.664] unit decrease	Illumina [542585]	N
926	chr10	44821386	44821387	rs10508884	33125391	Hassler S	2020-10-30	PLoS Med	Clinicogenomic factors of biotherapy immunogenicity in autoimmune disease: A prospective multicohort study of the ABIRISK consortium.	Anti-drug antibodies in autoimmune disease (time to event)	457 European ancestry individuals	NA	10q11.21	CXCL12	rs10508884-?	NR	4E-6				Illumina [351824]	N
927	chr10	44826732	44826733	rs1436931	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q11.21	NR	rs1436931-?	NR	8E-28				Affymetrix [NR]	N
927	chr10	44827196	44827197	rs10900020	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	10q11.21	CXCL12	rs10900020-?	NR	3E-6	(Positive symptoms)	0.1536	[NR] unit decrease	Affymetrix [696491]	N
927	chr10	44834596	44834597	rs12246602	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	10q11.21		rs12246602-T	0.103013426	1E-5		0.018728888	[0.01-0.027] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
927	chr10	44858680	44858681	rs10900027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q11.21		rs10900027-A	NR	8E-17		0.0149	[0.011-0.018] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
927	chr10	44858680	44858681	rs10900027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q11.21		rs10900027-A	NR	4E-17		0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.21	CXCL12	rs10900027-A	0.277212	1E-17		0.02151191	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q11.21	CXCL12	rs10900027-A	0.277205	5E-19		0.022375908	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q11.21	CXCL12	rs10900027-A	0.277193	7E-20		0.022918733	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs10900027-A	0.294895	1E-22				Affymetrix, Illumina [24653286] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q11.21	NR	rs10900027-A	0.278056	9E-26		0.022189	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs10900027-A	0.294274	2E-23				Affymetrix, Illumina [24558453] (imputed)	N
927	chr10	44858680	44858681	rs10900027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q11.21	NR	rs10900027-A	0.278172	5E-26		0.022333	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
927	chr10	44858867	44858868	rs78908135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q11.21	CXCL12	rs78908135-G	0.106318	8E-12		0.025515426	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44859617	44859618	rs17482472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q11.21	CXCL12	rs17482472-A	0.099127	5E-11		0.02439918	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44859617	44859618	rs17482472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q11.21	CXCL12	rs17482472-A	0.099148	2E-21		0.035286423	[0.028-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44859617	44859618	rs17482472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs17482472-A	0.0993528	2E-24				Affymetrix, Illumina [23467995] (imputed)	N
927	chr10	44859617	44859618	rs17482472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs17482472-A	0.0993768	2E-20				Affymetrix, Illumina [19872809] (imputed)	N
927	chr10	44859617	44859618	rs17482472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q11.21	NR	rs17482472-A	0.098902	5E-21		0.031481	[0.025-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
927	chr10	44859617	44859618	rs17482472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q11.21		rs17482472-?	NR	4E-18				NR [~ 8900000] (imputed)	N
927	chr10	44864167	44864168	rs266095	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	10q11.21	CXCL12	rs266095-?		8E-9	(EA)	56.3	[NR]	Illumina [936149]	N
927	chr10	44870239	44870240	rs197452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q11.21		rs197452-T	NR	7E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
927	chr10	44871345	44871346	rs17881575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs17881575-A	0.0988096	6E-22				Affymetrix, Illumina [23472807] (imputed)	N
927	chr10	44872377	44872377	rs71020333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q11.21	CXCL12	rs71020333-TAA	0.302678	7E-16		0.019850839	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44874252	44874253	rs266085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q11.21	CXCL12, AL137026.1	rs266085-T	0.343887	2E-9		0.014037513	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44874252	44874253	rs266085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.21		rs266085-?	NR	2E-16				NR [~ 8900000] (imputed)	N
927	chr10	44876291	44876292	rs371332557	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	10q11.21		rs371332557-?	NR	2E-8		0.616717	[0.4-0.84] unit increase	NR [9800000] (imputed)	N
927	chr10	44876498	44876499	rs17880863	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10q11.21		rs17880863-T	0.9	4E-9				Affymetrix [10369434] (imputed)	N
927	chr10	44878113	44878114	rs17879548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q11.21		rs17879548-G	NR	9E-16		0.0277	[0.021-0.034] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
927	chr10	44879710	44879711	rs7093481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q11.21		rs7093481-G	NR	1E-22		0.0228	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
927	chr10	44879710	44879711	rs7093481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q11.21		rs7093481-G	NR	9E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
927	chr10	44879710	44879711	rs7093481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q11.21		rs7093481-G	NR	1E-17		0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
927	chr10	44879710	44879711	rs7093481	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10q11.21		rs7093481-A	0.692	1E-9				Affymetrix [10369434] (imputed)	N
927	chr10	44880259	44880260	rs72790862	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	10q11.21		rs72790862-T	0.692	2E-11				Affymetrix [10369434] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q11.21	CXCL12	rs72790862-C	0.307728	1E-25		0.02510915	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q11.21	CXCL12	rs72790862-C	0.307753	3E-18		0.021002175	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs72790862-C	0.262334	5E-41				Affymetrix, Illumina [24649327] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q11.21	NR	rs72790862-C	0.306947	5E-38		0.025833	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs72790862-C	0.27746	1E-23				Affymetrix, Illumina [23114412] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q11.21	NR	rs72790862-C	0.307083	7E-24		0.021031	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
927	chr10	44880259	44880260	rs72790862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q11.21	NR	rs72790862-C	0.307082	2E-23		0.020289	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
927	chr10	44880259	44880260	rs72790862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q11.21		rs72790862-?	NR	3E-24				NR [~ 8900000] (imputed)	N
927	chr10	44882104	44882105	rs11239027	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q11.21	NR	rs11239027-A	0.02265	6E-10	(RAB14)	0.01702	NR unit increase	Illumina [1671387] (imputed)	N
927	chr10	44883629	44883630	rs2839680	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10q11.21		rs2839680-T	0.692	5E-8				Affymetrix [10369434] (imputed)	N
927	chr10	44887214	44887215	rs78051198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q11.21	NR	rs78051198-G	0.092351	5E-17		0.027432	[0.021-0.034] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
927	chr10	44888129	44888130	rs6593412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q11.21		rs6593412-G	0.607793	4E-9		0.013779021	[0.0092-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr10	44922039	44922040	rs17156360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q11.21		rs17156360-T	0.132383	3E-10		0.020482956	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
928	chr10	44967734	44967735	rs1147953	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	10q11.21	NR	rs1147953-?		3E-6				Illumina [892589]	N
928	chr10	44982552	44982553	rs61857771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	10q11.21		rs61857771-G	0.45773	2E-8		0.0252328	[0.016-0.034] unit decrease	Illumina [13471431] (imputed)	N
928	chr10	45003676	45003677	rs139572265	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	10q11.21	NR	rs139572265-C		6E-6		0.424	[0.24-0.61] SD units decrease	NR [10700000] (imputed)	N
928	chr10	45005294	45005295	rs77338073	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	10q11.21		rs77338073-A	NR	4E-6		2.72		Illumina [NR] (imputed)	N
928	chr10	45005294	45005295	rs77338073	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	10q11.21		rs77338073-A	NR	4E-6		2.6		Illumina [NR] (imputed)	N
928	chr10	45010159	45010160	rs1572202	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	10q11.21	intergenic	rs1572202-?	NR	5E-6		1.7677933	[1.38-2.26]	Illumina [at least 4756722] (imputed)	N
928	chr10	45034671	45034672	rs7072122	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	10q11.21	NR	rs7072122-?	0.051	6E-7		1.73	[1.397-2.141] unit increase	Illumina [563945]	N
929	chr10	45103414	45103415	rs994178	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	10q11.21	RP11-733D4.1	rs994178-A	0.5	8E-6		0.49	[0.27-0.71] unit increase	Illumina [5833901] (imputed)	N
929	chr10	45123378	45123379	rs11239177	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	10q11.21	NR	rs11239177-?	NR	3E-6		1.2306	[NR]	Affymetrix [722112]	N
929	chr10	45130284	45130285	rs149009264	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	10q11.21	NR	rs149009264-G		6E-6		0.4483	[0.26-0.64] SD units decrease	NR [10700000] (imputed)	N
929	chr10	45133276	45133277	rs11239187	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	10q11.21	CXCL12, TMEM72	rs11239187-?	NR	6E-6		0.56	[0.32-0.80] unit decrease	Illumina [1075436] (imputed)	N
929	chr10	45143949	45143950	rs11819599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q11.21		rs11819599-?	NR	2E-8				NR [~ 8900000] (imputed)	N
929	chr10	45161108	45161109	rs1480597	17052657	Fung HC	2006-09-28	Lancet Neurol	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	10q11.21	intergenic	rs1480597-?	NR	2E-6		2.5	[1.67-3.33]	Illumina [408803]	N
929	chr10	45182720	45182721	rs117097449	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking initiation (ever regular vs never regular)	67,773 Japanese ancestry ever smoker males, 21,905 Japanese ancestry never smoker males	NA	10q11.21	TMEM72-AS1, CXCL12	rs117097449-C	0.091	2E-8		1.1235955	[1.12-1.13]	Illumina [6108828] (imputed)	N
930	chr10	45230822	45230823	rs1325163	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	10q11.21	NR	rs1325163-?	NR	5E-6		0.0747	[0.042-0.107] unit decrease	Illumina [at least 560000] (imputed)	N
930	chr10	45273078	45273079	rs2246438	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q11.21	CXCL12, TMEM72	rs2246438-G		5E-8		0.22	unit increase	Affymetrix [at least 2696785] (imputed)	N
930	chr10	45273078	45273079	rs2246438	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q11.21	CXCL12, TMEM72	rs2246438-G		4E-7	(EA)	0.22	unit increase	Affymetrix [at least 2696785] (imputed)	N
930	chr10	45273078	45273079	rs2246438	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q11.21	CXCL12, TMEM72	rs2246438-G		1E-9		0.16	unit increase	Affymetrix [at least 2696785] (imputed)	N
930	chr10	45296352	45296354	rs201516598	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	10q11.21	NR	rs201516598-TAC		5E-6		0.4396	[0.25-0.63] SD units increase	NR [10700000] (imputed)	N
930	chr10	45313463	45313464	rs114655292	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	10q11.21		rs114655292-G	NR	4E-8		1.2736	unit increase	Illumina [8524982] (imputed)	N
930	chr10	45319653	45319654	rs7911712	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	10q11.21	AL139 119.2	rs7911712-A	0.15	6E-6	(quantitative)	2.05	[NR] HU increase	Illumina [499578]	N
930	chr10	45339903	45339904	rs1830888	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	10q11.21	TMEM72-AS1	rs1830888-T	0.10	3E-6		0.0959	[0.056-0.136] unit decrease	Illumina [6380737] (imputed)	N
931	chr10	45353242	45353243	rs1855111	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	10q11.21	NR	rs1855111-?		2E-6		2.57	[NR]	Illumina [NR] (imputed)	N
931	chr10	45379758	45379759	rs4948643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q11.21		rs4948643-?	NR	4E-10				NR [~ 8900000] (imputed)	N
931	chr10	45383502	45383503	rs11817356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q11.21		rs11817356-A	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
931	chr10	45383502	45383503	rs11817356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q11.21		rs11817356-A	NR	7E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
931	chr10	45387555	45387556	rs1977584	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q11.21	TMEM72	rs1977584-G		9E-6		0.76	[NR]	Illumina [up to 9464381] (imputed)	N
931	chr10	45388230	45388231	rs10793565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs10793565-C	0.585198	4E-61		0.03808317	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45388230	45388231	rs10793565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs10793565-C	0.585172	7E-51		0.03484361	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45388230	45388231	rs10793565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs10793565-C	0.585032	2E-101		0.04881779	[0.044-0.053] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45388230	45388231	rs10793565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q11.21	NR	rs10793565-C	0.583081	5E-118		0.043939	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
931	chr10	45388230	45388231	rs10793565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.21		rs10793565-?	NR	4E-95				NR [~ 8900000] (imputed)	N
931	chr10	45388230	45388231	rs10793565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q11.21		rs10793565-?	NR	1E-111				NR [~ 8900000] (imputed)	N
931	chr10	45389451	45389452	rs2026428	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q11.21		rs2026428-T	0.416	3E-75		0.21	[-0.23--0.19] % decrease	Affymetrix [NR] (imputed)	N
931	chr10	45389451	45389452	rs2026428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs2026428-C	0.585191	2E-109		0.0495549	[0.045-0.054] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45391480	45391481	rs4948645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs4948645-G	0.587462	2E-27		0.02529393	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45391480	45391481	rs4948645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs4948645-G	0.587469	1E-26		0.024571657	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45391962	45391963	rs7099692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q11.21		rs7099692-?	NR	2E-10				NR [~ 8900000] (imputed)	N
931	chr10	45392454	45392455	rs4948925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs4948925-A	0.535742	1E-123				Affymetrix, Illumina [24332387] (imputed)	N
931	chr10	45394960	45394961	rs12777258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.21	TMEM72-AS1	rs12777258-T	0.585683	1E-88		0.04564818	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr10	45395838	45395839	rs7909074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q11.21	RP11-285G1.2	rs7909074-A	0.5858	8E-53		0.05576551	[0.049-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr10	45399087	45399088	rs1408814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	10q11.21	NR	rs1408814-A	0.634316	2E-10		0.024214	[0.017-0.032] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
931	chr10	45399946	45399946	rs5784657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs5784657-TA	0.580935	3E-17		0.019823326	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45399946	45399946	rs5784657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs5784657-TA	0.580932	2E-14		0.017925724	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
931	chr10	45399959	45399959	rs397731217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs397731217-TA	0.5801	3E-11		0.02459904	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr10	45399959	45399959	rs397731217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs397731217-TA	0.5801	1E-10		0.02395703	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr10	45400234	45400235	rs6593447	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	10q11.21	TMEM72-AS1	rs6593447-G	0.39	9E-6		0.18	unit decrease	Illumina [5600000] (imputed)	N
931	chr10	45402310	45402311	rs10736831	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q11.21	NR	rs10736831-?	NR	2E-16		0.03631	[0.028-0.045] unit increase novel	Illumina [6108953] (imputed)	N
931	chr10	45402310	45402311	rs10736831	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q11.21	NR	rs10736831-?	NR	8E-16		0.03561	[0.027-0.044] unit increase novel	Illumina [6108953] (imputed)	N
931	chr10	45406607	45406608	rs2281841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q11.21		rs2281841-C	NR	2E-65		0.0306	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
931	chr10	45406607	45406608	rs2281841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs2281841-C	0.580999	1E-12		0.016535418	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr10	45406607	45406608	rs2281841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs2281841-C	0.581012	5E-18		0.02009413	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr10	45406607	45406608	rs2281841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs2281841-C	0.5803	8E-38		0.04742266	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr10	45406607	45406608	rs2281841	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q11.21	RP11-285G1.2, TMEM72-AS1	rs2281841-C	0.5804	1E-41		0.04963839	[0.042-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr10	45412776	45412777	rs17417060	31749835	Sangurdekar D	2019-11-04	Front Genet	Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate.	Moderate or severe prolonged lymphopenia in dimethyl fumarate-treated relapsing-remitting multiple sclerosis	206 European ancestry cases, 1,052 European ancestry controls	NA	10q11.21	TMEM72, RASSF4	rs17417060-?	NR	1E-6		2.1	[1.6-2.9]	Illumina [1016018]	N
931	chr10	45415206	45415207	rs10793567	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q11.21	TMEM72-AS1	rs10793567-?	NR	1E-9		0.462	[0.31-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
931	chr10	45415208	45415209	rs10793568	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q11.21	TMEM72	rs10793568-?		1E-14				Affymetrix, Illumina [NR] (imputed)	N
931	chr10	45457238	45457239	rs114557383	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q11.21	NR	rs114557383-G	0.01045	2E-8	(OGDH)	0.3933	NR unit increase	Illumina [1671387] (imputed)	N
932	chr10	45510322	45510323	rs4339993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.21		rs4339993-?	NR	1E-8				NR [~ 8900000] (imputed)	N
932	chr10	45553728	45553729	rs12358699	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1/FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	10q11.21	NR	rs12358699-?		9E-6	(EA)			Illumina [up to 524000]	N
933	chr10	45722971	45722972	rs73279468	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q11.21	intergenic	rs73279468-?	NR	7E-6		0.318	[0.13-0.5] unit decrease	Illumina [at least 13000000] (imputed)	N
934	chr10	45778427	45778428	rs7071166	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	1,446 Hispanics ancestry individuals	NA	10q11.21		rs7071166-?	NR	3E-6		0.15	[0.085-0.215] unit increase	Affymetrix [NR] (imputed)	N
935	chr10	45915940	45915941	rs2099171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q11.21		rs2099171-?	NR	2E-9				NR [~ 8900000] (imputed)	N
935	chr10	45925214	45925215	rs3780909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q11.21	ALOX5	rs3780909-A	0.501792	6E-11		0.016108993	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	45928385	45928386	rs78553679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q11.21	ALOX5	rs78553679-A	0.023023	4E-27		0.080157116	[0.066-0.095] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45931477	45931478	rs12247163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q11.21		rs12247163-?	NR	7E-38				NR [~ 8900000] (imputed)	N
935	chr10	45938238	45938239	rs2242332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	10q11.21		rs2242332-T	0.316542	2E-9		0.0240026	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
935	chr10	45938238	45938239	rs2242332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q11.21		rs2242332-T	0.316542	1E-9		0.0243068	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
935	chr10	45938238	45938239	rs2242332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q11.21		rs2242332-T	0.316542	2E-9		0.0240171	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
935	chr10	45938300	45938301	rs2242334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	10q11.21		rs2242334-G	0.316468	7E-10		0.0246977	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
935	chr10	45938300	45938301	rs2242334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	10q11.21		rs2242334-G	0.316468	6E-11		0.0262554	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
935	chr10	45938745	45938746	rs1051713	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q11.21	ALOX5	rs1051713-C	0.83	1E-8		5.72	z-score increase	Affymetrix [4312306] (imputed)	N
935	chr10	45946388	45946389	rs7089063	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q11.21		rs7089063-C	0.761	8E-88		0.26	[-0.28--0.23] % decrease	Affymetrix [NR] (imputed)	N
935	chr10	45949253	45949254	rs76493570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q11.21	RP11-67C2.2	rs76493570-A	0.07	4E-52		0.1057522	[0.092-0.119] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45949253	45949254	rs76493570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q11.21	RP11-67C2.2	rs76493570-A	0.07	1E-32		0.08362033	[0.07-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45950054	45950055	rs116840852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q11.21	MARCH8	rs116840852-C	0.0231940000000001	3E-28		0.0675346	[0.054-0.081] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45952744	45952745	rs3802548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q11.21	MARCH8	rs3802548-A	0.240834	5E-9		0.027281683	[0.018-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	45952744	45952745	rs3802548	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q11.21	MARC8	rs3802548-T	0.759572	9E-50		0.0340926	[0.03-0.039] unit decrease	Affymetrix [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q11.21	MARCH8	rs3802548-A	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q11.21	MARCH8	rs3802548-A	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q11.21	MARCH8	rs3802548-A	NR	4E-11				Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q11.21	MARCH8	rs3802548-A	NR	3E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q11.21	MARCH8	rs3802548-A	NR	6E-7	(EA)	0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q11.21	MARCH8	rs3802548-A	NR	1E-7		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952744	45952745	rs3802548	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q11.21	MARCH8	rs3802548-A	NR	7E-6		0.005969	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
935	chr10	45952895	45952896	rs77677521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.21	MARCH8	rs77677521-G	0.022724	7E-10		0.04612679	[0.031-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	45952895	45952896	rs77677521	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10q11.21	MARCH8	rs77677521-G	NR	1E-15		0.106339	[0.08-0.133] unit increase	Affymetrix [16832071] (imputed)	N
935	chr10	45952895	45952896	rs77677521	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q11.21	NR	rs77677521-G	0.0228	4E-12		0.08283033	[0.059-0.106] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45952895	45952896	rs77677521	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q11.21	NR	rs77677521-G	0.0228	4E-9		0.07013944	[0.047-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q11.21	MARCH8	rs7908745-G	0.315518	8E-51		0.036064308	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q11.21	MARCH8	rs7908745-G	0.315532	5E-35		0.02967729	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q11.21	MARCH8	rs7908745-G	0.315519	2E-51		0.041514896	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q11.21	MARCH8	rs7908745-G	0.315464	1E-57		0.04171351	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q11.21	MARCH8	rs7908745-G	0.31547	4E-53		0.06578308	[0.057-0.074] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs7908745-A	0.685356	6E-64				Affymetrix, Illumina [22063850] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q11.21	NR	rs7908745-A	0.685933	9E-67		0.035015	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
935	chr10	45953766	45953767	rs7908745	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10q11.21	NR	rs7908745-A	0.685035	6E-11		0.0134821	[0.0094-0.0175] unit decrease	Affymetrix [15000001]	N
935	chr10	45953766	45953767	rs7908745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	10q11.21	NR	rs7908745-G	0.3143	1E-19		0.03506293	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953766	45953767	rs7908745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	10q11.21	NR	rs7908745-G	0.3143	6E-15		0.03014323	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953766	45953767	rs7908745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q11.21	NR	rs7908745-G	0.3143	2E-67		0.06617714	[0.059-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953766	45953767	rs7908745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q11.21	NR	rs7908745-G	0.3143	4E-50		0.0573338	[0.05-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953766	45953767	rs7908745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q11.21	NR	rs7908745-G	0.3143	9E-45		0.05407684	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45953858	45953858	rs759766313	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	10q11.21		rs759766313-?	NR	1E-11		0.69623	[0.48-0.91] unit increase	NR [9800000] (imputed)	N
935	chr10	45955063	45955064	rs2279434	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	10q11.21	ANUBL1, FAM21C, AGAP4, MARCH8, ALOX5	rs2279434-T	0.12	3E-11		0.123	[0.088-0.158] unit increase	Illumina [561583]	N
935	chr10	45955063	45955064	rs2279434	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	10q11.21	ANUBL1, FAM21C, AGAP4, MARCH8, ALOX5	rs2279434-T	0.12	4E-12		0.128	[0.093-0.163] unit increase	Illumina [561583]	N
935	chr10	45957247	45957247	rs11394256	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q11.21	NR	rs11394256-CA	0.2397	1E-17		0.03578042	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45958675	45958676	rs17157825	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q11.21	MARCH8	rs17157825-?	NR	5E-35		0.08085	[0.068-0.094] unit increase novel	Illumina [6108953] (imputed)	N
935	chr10	45958855	45958856	rs2291428	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	10q11.21	MARCH8	rs2291428-?		2E-27		1.12	[1.10-1.15]	Affymetrix, Illumina [43000000] (imputed)	N
935	chr10	45958880	45958881	rs2291429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	10q11.21	NR	rs2291429-C	0.304397	4E-11		0.014996	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
935	chr10	45958880	45958881	rs2291429	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q11.21	MARCH8	rs2291429-A	0.76	9E-11	(3-dehydrocarnitine)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
935	chr10	45959728	45959729	rs146266174	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	10q11.21		rs146266174-?	NR	6E-15		0.151871	[0.11-0.19] unit decrease	NR [9800000] (imputed)	N
935	chr10	45959728	45959729	rs146266174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q11.21	MARCH8	rs146266174-G	0.00270499999999996	2E-13		0.15727475	[0.12-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	45961019	45961020	rs34731408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	10q11.21	NR	rs34731408-T	0.0695	7E-10		0.04348796	[0.03-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45963386	45963387	rs963029	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.21	MARCH8	rs963029-T	NR	3E-8	(Asian)	0.0043	[0.0027-0.0059] unit increase	NR [2500000] (imputed)	N
935	chr10	45963585	45963586	rs17157836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10q11.21	NR	rs17157836-C	0.0707	2E-9		0.04235193	[0.028-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45965084	45965085	rs12761399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	10q11.21	NR	rs12761399-G	0.883694	6E-46		0.089948	[0.078-0.102] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
935	chr10	45966421	45966422	rs901683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.21	MARCH8	rs901683-A	0.069784	1E-26		0.050650507	[0.041-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	45966421	45966422	rs901683	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.21	MARCH8	rs901683-?	NR	3E-11				NR [2500000] (imputed)	N
935	chr10	45966421	45966422	rs901683	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q11.21	MARCH8	rs901683-A	0.08	2E-16	(EA, MCV)	0.364	[0.27-0.46] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
935	chr10	45969060	45969064	rs67123723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q11.21		rs67123723-G	NR	4E-139		0.0891	[0.082-0.096] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
935	chr10	45972441	45972441	rs71023113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q11.21		rs71023113-TA	NR	9E-143		0.0901	[0.083-0.097] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
935	chr10	45974016	45974016	rs3086168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q11.21		rs3086168-T	0.769406	4E-8		0.025632	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
935	chr10	45974016	45974016	rs3086168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q11.21	MARCH8	rs3086168-TAA	0.230451	1E-64		0.045285337	[0.04-0.051] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45976850	45976851	rs34285816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.21		rs34285816-?	NR	6E-49				NR [~ 8900000] (imputed)	N
935	chr10	45978330	45978331	rs71494791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs71494791-T	0.0754412	8E-237				Affymetrix, Illumina [24246363] (imputed)	N
935	chr10	45978330	45978331	rs71494791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q11.21	NR	rs71494791-T	0.06915	2E-192		0.106155	[0.099-0.113] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
935	chr10	45978330	45978331	rs71494791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.21	NR	rs71494791-T	0.0767084	1E-201				Affymetrix, Illumina [20825802] (imputed)	N
935	chr10	45978330	45978331	rs71494791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q11.21	NR	rs71494791-T	0.069726	2E-163		0.103386	[0.096-0.111] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
935	chr10	45978597	45978598	rs11239536	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q11.21	MARC8	rs11239536-T	0.759033	5E-38		0.0287591	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
935	chr10	45979232	45979232	rs145976573	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q11.21	NR	rs145976573-?	0.7798	7E-11		0.022	[0.015-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
935	chr10	45980409	45980410	rs35739012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q11.21	MARCH8	rs35739012-G	0.070993	3E-14		0.03604091	[0.027-0.045] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45982507	45982508	rs11239537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q11.21	NR	rs11239537-C	0.3087	6E-50		0.05683413	[0.049-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45982507	45982508	rs11239537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q11.21	NR	rs11239537-C	0.3088	1E-44		0.0538346	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45992223	45992224	rs61611997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	10q11.21		rs61611997-A	NR	3E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
935	chr10	45995005	45995006	rs149604913	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q11.21	NR	rs149604913-C	0.0234	2E-14		0.09033996	[0.067-0.113] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	45998979	45998980	rs71494798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q11.22	MARCH8	rs71494798-A	0.0687060000000001	6E-10		0.027265245	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	4E-8		0.0258689	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	3E-10		0.029613	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	5E-13		0.0332255	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	8E-14		0.0324886	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-15		0.035489	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-12		0.0328657	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	1E-12		0.0329915	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	1E-10		0.0311139	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	5E-12		0.0319611	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	1E-13		0.0323486	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	1E-14		0.0346199	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	2E-12		0.0328671	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	2E-13		0.0339564	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	4E-11		0.0320419	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763402	7E-11		0.0317204	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	1E-14		0.0341082	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763375	9E-14		0.0327515	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	5E-13		0.0317767	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-14		0.0344939	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	9E-13		0.0310674	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-15		0.0348741	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	7E-14		0.0341979	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-14		0.0332781	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	9E-13		0.0332679	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	2E-12		0.0322862	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	6E-14		0.0334573	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	6E-13		0.0329102	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
935	chr10	45998984	45998984	rs148063610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	10q11.22		rs148063610-C	0.763372	5E-15		0.0354585	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
935	chr10	46001865	46001866	rs11239541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.22		rs11239541-?	NR	7E-55				NR [~ 8900000] (imputed)	N
935	chr10	46002855	46002856	rs71494799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q11.22		rs71494799-?	NR	9E-138				NR [~ 8900000] (imputed)	N
935	chr10	46003259	46003259	rs34156328	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10q11.22	NR	rs34156328-GA	NR	2E-15		0.0373331	[0.028-0.047] unit increase	Affymetrix [16832071] (imputed)	N
935	chr10	46003259	46003259	rs34156328	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q11.22	NR	rs34156328-GA	0.2415	1E-19		0.03902022	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
935	chr10	46003811	46003812	rs964686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.22	MARCH8	rs964686-T	0.317186	2E-12		0.018297927	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr10	46005429	46005429	rs71023121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q11.22	MARCH8	rs71023121-ACCACTGAT	0.069023	1E-173		0.11046	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	46005429	46005429	rs71023121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q11.22	MARCH8	rs71023121-ACCACTGAT	0.069037	2E-166		0.12183551	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
935	chr10	46005623	46005624	rs71494802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q11.22	MARCH8	rs71494802-A	0.068133	5E-15		0.03872611	[0.029-0.048] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46006966	46006967	rs35993099	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q11.22	NR	rs35993099-A	0.0672	1E-16		0.05957689	[0.045-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
936	chr10	46006966	46006967	rs35993099	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q11.22	NR	rs35993099-A	0.0673	2E-44		0.1000236	[0.086-0.114] unit increase	Affymetrix [~ 2500000] (imputed)	N
936	chr10	46007532	46007533	rs11239544	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	10q11.22	MARCH8	rs11239544-T	0.27	3E-8		0.037	[0.023-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
936	chr10	46008202	46008203	rs76416966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q11.22	MARCH8	rs76416966-T	0.067748	7E-18		0.03858393	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46008202	46008203	rs76416966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q11.22	MARCH8	rs76416966-T	0.067816	2E-29		0.050736826	[0.042-0.06] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46013276	46013277	rs970548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q11.22		rs970548-C	NR	2E-8		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
936	chr10	46013276	46013277	rs970548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q11.22	NR	rs970548-A	NR	9E-8		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
936	chr10	46013276	46013277	rs970548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q11.22	NR	rs970548-A	0.757	9E-7	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
936	chr10	46013276	46013277	rs970548	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	10q11.22	MARCH8, ALOX5	rs970548-A	0.723	1E-7	(Trans-ethnic initial)	0.025	[0.017-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
936	chr10	46013276	46013277	rs970548	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	10q11.22	MARCH8, ALOX5	rs970548-A	0.723	7E-9	(Trans-ethnic initial)	0.0258	[0.018-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
936	chr10	46013276	46013277	rs970548	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	10q11.22	MARCH8, ALOX5	rs970548-C	0.26	2E-10		0.026	[NR] unit increase	NR [NR] (imputed)	N
936	chr10	46013276	46013277	rs970548	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10q11.22	MARCH8, ALOX5	rs970548-C	0.26	8E-9		0.025	[NR] unit increase	NR [NR] (imputed)	N
936	chr10	46018830	46018831	rs11239549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q11.22		rs11239549-G	NR	1E-12		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
936	chr10	46018830	46018831	rs11239549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q11.22		rs11239549-G	NR	8E-25		0.0262	[0.021-0.031] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
936	chr10	46018830	46018831	rs11239549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	10q11.22		rs11239549-G	NR	7E-25		0.1054	[0.085-0.125] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
936	chr10	46018830	46018831	rs11239549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q11.22	NR	rs11239549-A	NR	4E-9		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
936	chr10	46018830	46018831	rs11239549	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q11.22	NR	rs11239549-A	0.763	9E-8	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
936	chr10	46020215	46020215	rs139300217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q11.22	NR	rs139300217-GAT	0.0233	5E-9		0.06909901	[0.046-0.092] unit increase	Affymetrix [~ 2500000] (imputed)	N
936	chr10	46024676	46024677	rs34897497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q11.22	NR	rs34897497-G	0.0669	1E-52		0.109344	[0.095-0.123] unit increase	Affymetrix [~ 2500000] (imputed)	N
936	chr10	46024728	46024729	rs11239550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	10q11.22	MARCH8	rs11239550-G	0.316578	2E-11		0.0159072	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46024728	46024729	rs11239550	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.22	MARCH8	rs11239550-A	NR	6E-9	(Asian)	0.0049	[0.0033-0.0065] unit decrease	NR [2500000] (imputed)	N
936	chr10	46024728	46024729	rs11239550	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.22	MARCH8	rs11239550-?	NR	8E-16				NR [2500000] (imputed)	N
936	chr10	46024728	46024729	rs11239550	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	10q11.22	MARCH8	rs11239550-G	NR	1E-10		0.0	[0.002-0.003] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr10	46042572	46042573	rs1982796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q11.22	MARCH8	rs1982796-A	0.308091	6E-57		0.038604192	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46042572	46042573	rs1982796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs1982796-A	0.28622	3E-12				Affymetrix, Illumina [21126107] (imputed)	N
936	chr10	46042572	46042573	rs1982796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs1982796-A	0.285776	9E-12				Affymetrix, Illumina [24653286] (imputed)	N
936	chr10	46042572	46042573	rs1982796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q11.22	NR	rs1982796-A	0.308317	8E-14		0.014925	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
936	chr10	46065450	46065451	rs61854123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs61854123-G	0.757329	1E-12		0.0302946	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
936	chr10	46065450	46065451	rs61854123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q11.22		rs61854123-G	0.757329	1E-12		0.0304003	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
936	chr10	46065450	46065451	rs61854123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	10q11.22		rs61854123-G	0.757329	7E-12		0.0293969	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
936	chr10	46069435	46069436	rs112297763	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	10q11.22	MARCH8	rs112297763-?	NR	3E-11		0.03935	[0.028-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
936	chr10	46074938	46074939	rs78661209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q11.22		rs78661209-A	0.113417	2E-53		0.0883625	[0.077-0.1] unit increase	Illumina [13476266] (imputed)	N
936	chr10	46074938	46074939	rs78661209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	10q11.22		rs78661209-A	0.113447	2E-47		0.0839761	[0.073-0.095] unit increase	Illumina [13476299] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	10q11.22		rs34793991-?	0.0545	2E-8		0.0384	[0.025-0.052] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	10q11.22		rs34793991-?	0.0641	5E-6		0.0394	[0.023-0.056] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	10q11.22		rs34793991-?	0.0545	4E-11		0.5708	[0.4-0.74] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	10q11.22		rs34793991-?	0.0641	2E-8		0.5839	[0.38-0.79] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	10q11.22		rs34793991-?	0.0545	4E-10		0.2094	[0.14-0.27] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46080589	46080590	rs34793991	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	10q11.22		rs34793991-?	0.0641	1E-7		0.2159	[0.14-0.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
936	chr10	46082984	46082985	rs76934034	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q11.22	NR	rs76934034-T	0.92	2E-14		1.12	[1.09-1.16]	Illumina [20370935] (imputed)	N
936	chr10	46082984	46082985	rs76934034	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	10q11.22	MARCH8	rs76934034-T	0.91	5E-9	(EA)	1.14	[1.10-1.18]	Affymetrix, Illumina [up to 16852405] (imputed)	N
936	chr10	46082984	46082985	rs76934034	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	10q11.22	MARCH8	rs76934034-T	0.91	1E-8		1.13	[1.09-1.17]	Affymetrix, Illumina [up to 16852405] (imputed)	N
936	chr10	46096500	46096501	rs141600568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q11.22		rs141600568-G	0.248626	4E-66		0.0279442	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
936	chr10	46100100	46100101	rs57491883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	10q11.22		rs57491883-C	0.200581	3E-12		0.0272848	[0.02-0.035] unit decrease	Illumina [13479135] (imputed)	N
936	chr10	46104942	46104943	rs7075427	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q11.22	NR	rs7075427-A	NR	2E-16		1.12	[1.09-1.15]	Affymetrix, Illumina [29235255] (imputed)	N
936	chr10	46121045	46121046	rs10900229	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q11.22	ZFAND4	rs10900229-C	0.74	7E-10		6.17	z-score increase	Affymetrix [4311822] (imputed)	N
936	chr10	46129268	46129269	rs75085022	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q11.22	ZFAND4	rs75085022-?	NR	2E-42		0.09077	[0.078-0.104] unit increase novel	Illumina [6108953] (imputed)	N
936	chr10	46132452	46132453	rs376815248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q11.22		rs376815248-G	NR	3E-15		0.0206	[0.016-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
937	chr10	46149944	46149945	rs191719058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.22		rs191719058-?	NR	8E-28				NR [~ 8900000] (imputed)	N
937	chr10	46151949	46151949	rs541781976	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.22	ZFAND4	rs541781976-CAA	0.245	2E-25	(Beta-microseminoprotein, MSMB.10620.21.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
937	chr10	46183585	46183586	rs550185027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q11.22	CTGLF10P	rs550185027-T	0.019191	2E-38		0.11132017	[0.095-0.128] unit increase	Affymetrix [93095623] (imputed)	N
937	chr10	46183585	46183586	rs550185027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q11.22	CTGLF10P	rs550185027-T	0.019169	6E-17		0.07305617	[0.056-0.09] unit increase	Affymetrix [93095623] (imputed)	N
937	chr10	46202428	46202429	rs35267807	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q11.22	AGAP10P	rs35267807-G	0.694846	1E-20		0.00231485	[0.0018-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
937	chr10	46202428	46202429	rs35267807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.22		rs35267807-?	NR	7E-11				NR [~ 8900000] (imputed)	N
937	chr10	46203640	46203641	rs368332850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q11.22		rs368332850-?	NR	9E-10				NR [~ 8900000] (imputed)	N
937	chr10	46216094	46216095	rs181718607	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q11.22	FAM21C	rs181718607-T	0.0011	4E-79		22.4414	[20.11-24.78] mmHg increase	Affymetrix [NR] (imputed)	N
937	chr10	46222723	46222724	rs10793625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	10q11.22	NR	rs10793625-C	0.785707	2E-41		0.088979	[0.076-0.102] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
937	chr10	46234433	46234434	rs12246276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	10q11.22	NR	rs12246276-T	0.753887	1E-13		0.045404	[0.033-0.057] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
937	chr10	46245556	46245557	rs112842230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q11.22	FAM21C	rs112842230-C	0.204203	4E-9		0.018390365	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr10	46254200	46254201	rs371471717	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	10q11.22		rs371471717-?	NR	8E-6				Illumina [7401356] (imputed)	N
943	chr10	46962990	46962991	rs7914056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs7914056-A	0.54585	7E-14				Affymetrix, Illumina [24246363] (imputed)	N
943	chr10	46962990	46962991	rs7914056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs7914056-A	0.545846	2E-14				Affymetrix, Illumina [20825802] (imputed)	N
944	chr10	47092970	47092971	rs112609766	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC244230.2	rs112609766-?	NR	4E-8	(male)	0.724063	[NR] unit increase	Affymetrix [NR] (imputed)	N
947	chr10	47541707	47541708	rs74622866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q11.22		rs74622866-A	NR	1E-16		0.0563	[0.043-0.07] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
947	chr10	47541707	47541708	rs74622866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q11.22		rs74622866-A	NR	9E-18		0.0584	[0.045-0.072] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
947	chr10	47546322	47546323	rs6602880	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	10q11.22		rs6602880-?	NR	4E-7		1.09874	[1.06-1.14]	NR [680312]	N
947	chr10	47551966	47551967	rs56981891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs56981891-T	0.10094500000000001	7E-24				Affymetrix, Illumina [24246363] (imputed)	N
947	chr10	47551966	47551967	rs56981891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs56981891-T	0.101179	5E-22				Affymetrix, Illumina [20825802] (imputed)	N
947	chr10	47561247	47561248	rs186987935	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs186987935-G	0.989266	5E-14				Affymetrix, Illumina [22063850] (imputed)	N
948	chr10	47599028	47599029	rs11599847	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q11.22	NR	rs11599847-T	NR	2E-8		1.115	[1.07-1.16]	Affymetrix, Illumina [29235255] (imputed)	N
948	chr10	47600048	47600049	rs11259826	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	10q11.22	AHCYP1, ANTXRLP1	rs11259826-T	0.038	9E-6		0.131	[0.073-0.189] unit decrease	NR [4841651] (imputed)	N
948	chr10	47602184	47602185	rs147374254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q11.22		rs147374254-T	0.023048	3E-8		0.0717655	[0.046-0.097] unit increase	Illumina [13476266] (imputed)	N
948	chr10	47602184	47602185	rs147374254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	10q11.22		rs147374254-T	0.023054	9E-10		0.080256	[0.055-0.106] unit increase	Illumina [13476299] (imputed)	N
948	chr10	47632166	47632167	rs111256285	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	10q11.22	NR	rs111256285-G	NR	9E-6	(Hispanic)	8.43	[12.08-4.79 unit decrease	Affymetrix [14000000] (imputed)	N
948	chr10	47635106	47635107	rs2999422	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	3,928 European ancestry individuals	455 European ancestry individuals	10q11.22	ANTXRLP1	rs2999422-T	0.43	7E-10		0.18	[0.12-0.24] unit decrease	Illumina [7251583] (imputed)	N
948	chr10	47636154	47636155	rs4576754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.22		rs4576754-?	NR	3E-9				NR [~ 8900000] (imputed)	N
948	chr10	47637115	47637116	rs3887818	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	10q11.22	AGAP9	rs3887818-C	0.34	7E-6	(African American)	0.2	0.11-0.28 unit increase	Illumina [NR] (imputed)	N
948	chr10	47684874	47684875	rs3013795	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	10q11.22	ANTXRL	rs3013795-T	NR	1E-6		0.103	[0.062-0.144] unit decrease	Illumina [27700000] (imputed)	N
949	chr10	47733665	47733666	rs11592474	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals		NR	rs11592474-A	0.9136	8E-7		4.4183	[2.67-6.17] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
951	chr10	48005275	48005276	rs2338747	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		Intergenic	rs2338747-G	0.1308927	3E-13	(EA, Neutral ceramidase)	0.468	[0.34-0.59] unit decrease	Affymetrix [509946]	N
951	chr10	48021140	48021141	rs2574974	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA		intergenic	rs2574974-T	0.017	4E-18		2.061	NR	Affymetrix, Illumina [39127678] (imputed)	N
953	chr10	48328125	48328126	rs74129883	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	10q11.22	ZNF488	rs74129883-A	NR	7E-7	(males)	0.218	[0.13-0.3] unit decrease	Illumina [7531543] (imputed)	N
954	chr10	48369918	48369919	rs11204209	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	10q11.22	ZNF488	rs11204209-?	NR	3E-6				Illumina [1539908]	N
954	chr10	48370746	48370747	rs35618062	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	10q11.22		rs35618062-T	0.139	4E-8		0.15679298	[0.096-0.218] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
954	chr10	48379889	48379890	rs112143493	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q11.22	ZNF488, RBP3	rs112143493-?	NR	2E-18		2.367	[1.82-2.91] unit decrease	Affymetrix [11100000] (imputed)	N
954	chr10	48388227	48388228	rs11204213	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	10q11.22		rs11204213-T	NR	3E-10		0.0681	[0.048-0.088] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
954	chr10	48388227	48388228	rs11204213	24963161	Chen P	2014-06-24	Hum Mol Genet	CMPK1 and RBP3 are associated with corneal curvature in Asian populations.	Corneal curvature	3,178 Chinese ancestry individuals, 2,138 Malay ancestry individuals, 2,124 Asian Indian ancestry individuals	2,473 Chinese ancestry individuals, 2,747 Japanese ancestry individuals	10q11.22	RBP3	rs11204213-T	0.04	1E-13		0.29	[0.21-0.37] unit increase	Illumina [~ 7000000] (imputed)	N
954	chr10	48411795	48411796	rs34130368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q11.22		rs34130368-T	NR	2E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
954	chr10	48411795	48411796	rs34130368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q11.22		rs34130368-T	NR	4E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
954	chr10	48411795	48411796	rs34130368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q11.22		rs34130368-T	NR	4E-12		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q11.22	GDF2	rs34130368-T	0.115412	9E-10		0.021160994	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q11.22	GDF2	rs34130368-T	0.115394	5E-12		0.023873659	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q11.22	GDF2	rs34130368-T	0.115412	1E-15		0.027593829	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.181766	4E-15				Affymetrix, Illumina [24332387] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.116407	8E-16		0.023847	[0.018-0.03] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.179422	5E-18				Affymetrix, Illumina [24653286] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.116112	2E-19		0.026623	[0.021-0.032] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.177698	4E-22				Affymetrix, Illumina [24558453] (imputed)	N
954	chr10	48411795	48411796	rs34130368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q11.22	NR	rs34130368-T	0.116148	7E-23		0.029185	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
954	chr10	48411795	48411796	rs34130368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.22		rs34130368-?	NR	1E-14				NR [~ 8900000] (imputed)	N
954	chr10	48411795	48411796	rs34130368	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q11.22	GDF2	rs34130368-T	0.1166	6E-12		0.2715	[0.19-0.35] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
954	chr10	48424758	48424759	rs7093975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q11.22		rs7093975-?	NR	7E-11				NR [~ 8900000] (imputed)	N
954	chr10	48434223	48434224	rs2125068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q11.22		rs2125068-A	NR	5E-8		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
954	chr10	48434223	48434224	rs2125068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q11.22		rs2125068-A	NR	1E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
954	chr10	48434419	48434420	rs2125067	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q11.22	NR	rs2125067-C	0.1151	5E-9	(East Asian)	0.5955	[0.4-0.79] unit increase	Illumina [6200000] (imputed)	N
954	chr10	48434419	48434420	rs2125067	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q11.22	NR	rs2125067-C	0.1151	3E-8	(East Asian)	0.3984	[0.26-0.54] unit increase	Illumina [6200000] (imputed)	N
954	chr10	48434419	48434420	rs2125067	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q11.22	NR	rs2125067-C	0.1207	9E-6	(East Asian)	0.0828	[0.046-0.119] unit increase	Illumina [6200000] (imputed)	N
954	chr10	48434419	48434420	rs2125067	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q11.22	NR	rs2125067-C	0.1207	8E-7	(East Asian)	0.3169	[0.19-0.44] unit increase	Illumina [6200000] (imputed)	N
954	chr10	48442077	48442078	rs1902713	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10q11.22		rs1902713-?	NR	2E-8				NR [9705931] (imputed)	N
954	chr10	48442077	48442078	rs1902713	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 20)	4,680 European ancestry individuals	3,566 European ancestry individuals	10q11.22		rs1902713-C	0.366593164	2E-8				Illumina [7417619] (imputed)	N
954	chr10	48442893	48442894	rs17537178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q11.22		rs17537178-G	0.26	1E-37		12.83	z score increase	Affymetrix [9061022] (imputed)	N
954	chr10	48442893	48442894	rs17537178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q11.22		rs17537178-G	0.26	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
954	chr10	48442893	48442894	rs17537178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q11.22		rs17537178-G	0.26	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
954	chr10	48442893	48442894	rs17537178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q11.22	NR	rs17537178-G	0.267	5E-11				NR [9056863] (imputed)	N
954	chr10	48442893	48442894	rs17537178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q11.22	NR	rs17537178-G	0.267	4E-8				NR [9056863] (imputed)	N
955	chr10	48499270	48499271	rs9421748	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	10q11.22	intergenic	rs9421748-A	0.5279	5E-7	(AUC)	0.2526	[0.15-0.35] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
955	chr10	48499926	48499927	rs74842138	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	10q11.22	GDF10	rs74842138-?		3E-6				Illumina [2668805]	N
955	chr10	48552550	48552551	rs11204266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.22		rs11204266-?	NR	3E-12				NR [~ 8900000] (imputed)	N
956	chr10	48632382	48632383	rs35230829	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	10q11.22	Intergenic	rs35230829-C	NR	2E-6	(men)	0.0541493	[0.032-0.076] unit increase	Illumina [13520550] (imputed)	N
956	chr10	48642825	48642826	rs80242667	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q11.22	NR	rs80242667-?	NR	2E-8				Illumina [7760689] (imputed)	N
961	chr10	49313244	49313245	rs2270911	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	10q11.22	FAM25C	rs2270911-?	NR	2E-8		0.062	NR % increase	Affymetrix [9390170] (imputed)	N
961	chr10	49335931	49335932	rs2163150	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	10q11.22	NR	rs2163150-?	NR	2E-16		0.0732	NR L decrease	Affymetrix [9390170] (imputed)	N
961	chr10	49370089	49370090	rs2438988	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPY	5,368 Icelandic ancestry individuals	NA	10q11.22		rs2438988-A	0.3739	1E-20		0.176996	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
961	chr10	49392574	49392575	rs931743	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q11.22	NR	rs931743-?	NR	3E-6		0.0974023	[0.057-0.138] unit decrease	NR [13958389] (imputed)	N
961	chr10	49397231	49397232	rs1367023	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q11.22	NR	rs1367023-G		7E-15		0.09	[0.07-0.11] unit increase	NR [NR]	N
961	chr10	49405012	49405013	rs56036047	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q11.22	ANXA8, ZNF488, GDF2, FRMPD2, MAPK8, ARHGAP22	rs56036047-?		2E-49				Affymetrix, Illumina [NR] (imputed)	N
961	chr10	49408240	49408240	rs201140091	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	10q11.22	FRMPD2	rs201140091-?	NR	4E-13		1.068	[1.049-1.087]	Illumina [13762925] (imputed)	N
961	chr10	49410676	49410677	rs4838578	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	10q11.22	NR	rs4838578-?	NR	5E-6		0.0888347	[0.051-0.127] unit increase	NR [13958389] (imputed)	N
962	chr10	49414180	49414181	rs11101263	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q11.22	FRMPD2	rs11101263-T	0.2582	2E-13		7.329	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
962	chr10	49414180	49414181	rs11101263	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q11.22	NR	rs11101263-T	0.2672	2E-9		0.047	[0.032-0.062] unit decrease	Illumina [~ 10600000] (imputed)	N
962	chr10	49478761	49478762	rs77336990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10q11.22	Intergenic	rs77336990-?		2E-6		1.12	[1.07-1.17]	Illumina [7645193] (imputed)	N
962	chr10	49478761	49478762	rs77336990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10q11.22	Intergenic	rs77336990-?		2E-6		2.77	[1.82-4.20]	Illumina [7645193] (imputed)	N
963	chr10	49574825	49574826	rs1881736	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	10q11.22	MAPK8	rs1881736-A	0.04	4E-7		0.63	[NR]	Illumina [NR] (imputed)	N
963	chr10	49638359	49638360	rs7896768	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10q11.22	NR	rs7896768-T	NR	3E-6	(male)	0.4577	[0.26-0.65] unit increase	Illumina [11133794] (imputed)	N
963	chr10	49652156	49652157	rs61838703	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC016397.2	rs61838703-?	NR	5E-9	(male)	2.26806	[NR] unit decrease	Affymetrix [NR] (imputed)	N
963	chr10	49652346	49652346	rs144825056	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q11.22	NR	rs144825056-?	NR	1E-6		0.248702	[0.15-0.35] unit increase	NR [13958389] (imputed)	N
963	chr10	49662439	49662440	rs61838723	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARHGAP22	rs61838723-?	NR	5E-9	(male)	2.27739	[NR] unit decrease	Affymetrix [NR] (imputed)	N
963	chr10	49669141	49669142	rs4838594	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	10q11.22	ARHGAP22, MAPK8, ARHGAP22-IT1, FRMPD2	rs4838594-C	NR	4E-6	(daytime napping)	0.6979	[0.4-1] unit decrease	Affymetrix [7141204] (imputed)	N
963	chr10	49675246	49675247	rs4838595	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	10q11.22	NR	rs4838595-?	NR	7E-11				Affymetrix, Illumina [6210504] (imputed)	N
963	chr10	49675246	49675247	rs4838595	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	10q11.22	NR	rs4838595-T	0.1217	1E-8		0.2576	[0.17-0.35] unit decrease	Affymetrix, Illumina [7565493] (imputed)	N
964	chr10	49686733	49686734	rs72783094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q11.22	NR	rs72783094-A	0.90845	2E-8		0.00827063	[0.0054-0.0111] unit increase	Affymetrix [16582909] (imputed)	N
964	chr10	49686733	49686734	rs72783094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q11.22	NR	rs72783094-A	0.90845	2E-6		0.00815984	[0.005-0.0114] unit increase	Affymetrix [16582965] (imputed)	N
964	chr10	49699956	49699957	rs4838605	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	10q11.22	ARHGAP22	rs4838605-C	NR	2E-9				Illumina [~ 550000]	N
964	chr10	49719977	49719978	rs1445155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.22		rs1445155-?	NR	4E-8				NR [~ 8900000] (imputed)	N
964	chr10	49735562	49735563	rs10776612	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	10q11.22	ARHGAP22	rs10776612-T	0.519	2E-6		1.33	[1.18-1.49]	Illumina [948658]	N
964	chr10	49741134	49741135	rs1947075	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	10q11.22	NR	rs1947075-T	0.64	3E-8		0.21	[0.13-0.29] unit decrease	Affymetrix [9231066] (imputed)	N
964	chr10	49741134	49741135	rs1947075	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	10q11.22	NR	rs1947075-T	0.64	3E-8		0.21	[0.13-0.29] unit decrease	Affymetrix [9231066] (imputed)	N
964	chr10	49741134	49741135	rs1947075	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q11.22	ARHGAP22	rs1947075-?	NR	9E-24		0.7019	[0.56-0.84] unit increase	Affymetrix [11100000] (imputed)	N
964	chr10	49757558	49757559	rs4593967	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure (education interaction)	1,518 African American individuals with high school education, 731 African American individuals with college education, 328 African American individuals with less than high school education	NA	10q11.22	ARHGAP22	rs4593967-?	0.14	1E-7		2.53	[1.59-3.47] mmHg decrease	Illumina [115834]	N
964	chr10	49757558	49757559	rs4593967	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Systolic blood pressure	2,577 African American Individuals	NA	10q11.22	ARHGAP22	rs4593967-?	0.14	1E-7		2.51	mmHg decrease	Illumina [115834]	N
964	chr10	49763165	49763166	rs10776614	23593239	van der Loos MJ	2013-04-04	PLoS One	The molecular genetic architecture of self-employment.	Self-employment	7,734 European ancestry cases, 42,893 European ancestry controls	737 cases, 2,534 controls	10q11.22	ARHGAP22	rs10776614-T	0.16	7E-6				Affymetrix, Illumina [~ 2400000] (imputed)	N
965	chr10	49911356	49911357	rs17771318	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	10q11.23	WDFY4	rs17771318-A	0.01	9E-8	(cohort study)	4.29	[2.52-7.32]	Affymetrix, Illumina [up to 2600000] (imputed)	N
965	chr10	49911356	49911357	rs17771318	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	10q11.23	WDFY4	rs17771318-A	0.01	9E-8		1.46	[0.93-1.99] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
965	chr10	49930759	49930760	rs76519098	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	10q11.23	MAPK8	rs76519098-C	0.98	3E-6		0.83	unit decrease	Illumina [5270624] (imputed)	N
965	chr10	49933973	49933974	rs7072606	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q11.23	NR	rs7072606-T	0.809	2E-12		0.884	[0.85-0.92]	Illumina [11270530] (imputed)	N
965	chr10	49936335	49936336	rs11101442	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	10q11.23	c10orf64	rs11101442-?	0.32	3E-6			[NR]	Affymetrix [313238]	N
966	chr10	49974655	49974656	rs10857635	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	10q11.23	WDFY4	rs10857635-?	NR	7E-10		1.1627907	[1.1-1.22]	Illumina [at least 5000000] (imputed)	N
966	chr10	49978659	49978659	rs778217695	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	10q11.23		rs778217695-T	NR	1E-6		0.85	[0.79-0.9]	Illumina [7105229] (imputed)	N
966	chr10	49985109	49985110	rs10857636	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	10q11.23	WDFY4	rs10857636-T	0.06	2E-7	(Bupropion, General side effects)			Affymetrix [421789]	N
966	chr10	50018164	50018165	rs2928402	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	10q11.23	WDFY4	rs2928402-C	0.182	1E-6		1.39	[1.23-1.57]	Illumina [580483] (imputed)	N
966	chr10	50025395	50025396	rs7097397	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	10q11.23		rs7097397-A	NR	2E-10		0.143772	[0.099-0.188] unit decrease	NR [5054572] (imputed)	N
966	chr10	50025395	50025396	rs7097397	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10q11.23		rs7097397-A	NR	1E-12		0.92	[0.9-0.94]	NR [13810676] (imputed)	N
966	chr10	50025395	50025396	rs7097397	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q11.23	WDFY4	rs7097397-A	0.651	2E-40		0.81	[0.78-0.84]	Illumina [11270530] (imputed)	N
966	chr10	50025395	50025396	rs7097397	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	10q11.23	WDFY4	rs7097397-?	0.694	5E-7	(Chinese)	1.27	[NR]	NR [6344733] (imputed)	N
966	chr10	50025395	50025396	rs7097397	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	10q11.23	WDFY4	rs7097397-?	0.383	9E-11	(EA)	1.22	[NR]	NR [6344733] (imputed)	N
966	chr10	50025395	50025396	rs7097397	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	10q11.23	WDFY4	rs7097397-?	NR	2E-9		1.33	[1.21-1.46]	Illumina [NR]	N
966	chr10	50025395	50025396	rs7097397	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	10q11.23	WDFY4	rs7097397-G		9E-12		1.2	[NR]	Illumina [> 644674] (imputed)	N
966	chr10	50025395	50025396	rs7097397	20169177	Yang W	2010-02-12	PLoS Genet	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	314 Chinese ancestry cases, 1,484 Chinese ancestry controls	2,630 Chinese ancestry cases, 2,155 Chinese ancestry controls, 314 Thai ancestry cases, 519 Thai ancestry controls	10q11.23	WDFY4	rs7097397-G	0.28	8E-12		1.3	[1.21-1.40]	Illumina [514221]	N
966	chr10	50026019	50026020	rs7919656	29331962	Kochi Y	2018-01-13	Ann Rheum Dis	Splicing variant of WDFY4 augments MDA5 signalling and the risk of clinically amyopathic dermatomyositis.	Clinically amyopathic dermatomyositis	33 Japanese ancestry cases, 6,270 East Asian ancestry controls	21 European ancestry cases, 84 European ancestry controls	10q11.23	WDFY4	rs7919656-A	0.129	2E-8	(Japanese)	3.87	[2.33-6.55]	Illumina [496819]	N
966	chr10	50042950	50042951	rs877819	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	10q11.23	NR	rs877819-A	NR	3E-9				Illumina [NR] (imputed)	N
966	chr10	50042950	50042951	rs877819	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q11.23	WDFY4	rs877819-A	0.18	8E-9		1.46		Illumina [2100739] (imputed)	N
966	chr10	50045455	50045456	rs7922169	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	10q11.23		rs7922169-T	NR	5E-8		0.106451	[0.068-0.145] unit increase	NR [2787054] (imputed)	N
966	chr10	50069394	50069395	rs2663052	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	10q11.23	WDFY4	rs2663052-C		5E-9		1.16	[1.10-1.22]	Illumina [644674]	N
967	chr10	50097380	50097381	rs17011373	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q11.23	NR	rs17011373-?	NR	8E-11				Affymetrix [NR]	N
967	chr10	50097818	50097819	rs2671692	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	10q11.23	WDFY4	rs2671692-A	0.592	3E-8				NR [509413]	N
967	chr10	50097818	50097819	rs2671692	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q11.23	WDFY4	rs2671692-A	NR	6E-7		0.0564977	[-0.00731-0.12031] unit increase	Illumina [8380626] (imputed)	N
967	chr10	50097818	50097819	rs2671692	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q11.23	WDFY4	rs2671692-A	0.52	3E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
967	chr10	50101976	50101977	rs2663054	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	10q11.23	WDFY4	rs2663054-?	NR	1E-8		1.2048193	[1.14-1.28]	Illumina [at least 5000000] (imputed)	N
967	chr10	50103071	50103072	rs12252129	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	10q11.23	WDFY4	rs12252129-G	2.0E-4	7E-6	(O'Connor Slope)	1.186	[NR] unit increase	Illumina [546355]	N
967	chr10	50109222	50109223	rs3849150	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	10q11.23	LRRC18	rs3849150-?	NR	2E-6	(AAC)			Affymetrix [70897]	N
967	chr10	50119053	50119054	rs1913517	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	10q11.23	LRRC18, WDFY4	rs1913517-A	0.29	7E-12		1.24	[1.17-1.32]	Illumina [493955]	N
968	chr10	50216448	50216449	rs11813727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q11.23	NR	rs11813727-C	0.243528	3E-13		0.016648	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
968	chr10	50229637	50229638	rs2137920	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	10q11.23	intergenic	rs2137920-T	0.18	1E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
968	chr10	50230126	50230127	rs61848153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.23		rs61848153-?	NR	5E-16				NR [~ 8900000] (imputed)	N
968	chr10	50244147	50244148	rs2943252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q11.23	VSTM4	rs2943252-G	0.697501	3E-11		0.016110655	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50244147	50244148	rs2943252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs2943252-A	0.302764	2E-11				Affymetrix, Illumina [22063850] (imputed)	N
968	chr10	50248923	50248924	rs61850681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	10q11.23		rs61850681-A	NR	2E-15		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
968	chr10	50252257	50252258	rs61850682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q11.23	VSTM4	rs61850682-T	0.233485	5E-14		0.020041768	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50252257	50252258	rs61850682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q11.23	VSTM4	rs61850682-T	0.233487	5E-14		0.020005198	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50252257	50252258	rs61850682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q11.23	VSTM4	rs61850682-T	0.233492	7E-9		0.01530546	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50252257	50252258	rs61850682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q11.23	VSTM4	rs61850682-T	0.2335	8E-9		0.015261151	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50252571	50252572	rs144421398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q11.23		rs144421398-G	NR	1E-35		0.034	[0.029-0.039] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
968	chr10	50252935	50252936	rs61850684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q11.23		rs61850684-A	NR	2E-16		0.0225	[0.017-0.028] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
968	chr10	50252935	50252936	rs61850684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q11.23		rs61850684-G	0.765	1E-17				Affymetrix [10369434] (imputed)	N
968	chr10	50252935	50252936	rs61850684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q11.23	VSTM4	rs61850684-A	0.234609	5E-20		0.024014162	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50252935	50252936	rs61850684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q11.23	VSTM4	rs61850684-A	0.234562	3E-19		0.023594055	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50252935	50252936	rs61850684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs61850684-A	0.226888	7E-44				Affymetrix, Illumina [23472807] (imputed)	N
968	chr10	50252935	50252936	rs61850684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q11.23	NR	rs61850684-A	0.233502	3E-47		0.032458	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
968	chr10	50259006	50259007	rs28505677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q11.23		rs28505677-G	NR	7E-31		0.0316	[0.026-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
968	chr10	50259006	50259007	rs28505677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q11.23	VSTM4	rs28505677-G	0.235724	6E-48		0.038981434	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50259006	50259007	rs28505677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q11.23	VSTM4	rs28505677-G	0.235729	5E-36		0.03353417	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50259006	50259007	rs28505677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs28505677-G	0.227796	9E-59				Affymetrix, Illumina [24588908] (imputed)	N
968	chr10	50259006	50259007	rs28505677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q11.23	NR	rs28505677-G	0.234457	4E-62		0.036198	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
968	chr10	50260875	50260876	rs7896344	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	10q11.23		rs7896344-?	NR	2E-20				NR [9705931] (imputed)	N
968	chr10	50261776	50261777	rs17011715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10q11.23	VSTM4	rs17011715-G	0.234	2E-18		0.03734069	[0.029-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr10	50263200	50263201	rs4272720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q11.23		rs4272720-A	0.764	2E-21				Affymetrix [10369434] (imputed)	N
968	chr10	50263200	50263201	rs4272720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs4272720-G	0.211102	3E-23				Affymetrix, Illumina [23467995] (imputed)	N
968	chr10	50263200	50263201	rs4272720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q11.23		rs4272720-?	NR	8E-21				NR [~ 8900000] (imputed)	N
968	chr10	50263200	50263201	rs4272720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q11.23	VSTM4	rs4272720-G	0.2362	3E-19		0.0387588	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr10	50263200	50263201	rs4272720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	10q11.23	VSTM4	rs4272720-G	0.2363	4E-16		0.03501395	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr10	50264203	50264204	rs17011726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs17011726-G	0.223329	1E-24				Affymetrix, Illumina [24649327] (imputed)	N
968	chr10	50264203	50264204	rs17011726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q11.23	NR	rs17011726-G	0.232584	4E-27		0.023627	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
968	chr10	50264203	50264204	rs17011726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q11.23	NR	rs17011726-G	0.233294	1E-24		0.022772	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
968	chr10	50264203	50264204	rs17011726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	10q11.23	NR	rs17011726-G	0.23358	2E-21		0.022657	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
968	chr10	50264203	50264204	rs17011726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q11.23	VSTM4	rs17011726-G	0.2348	2E-10		0.0269236	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr10	50266929	50266930	rs36116147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	10q11.23	VSTM4	rs36116147-T	0.234538	8E-21		0.0244482	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50286522	50286524	rs56699372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q11.23	VSTM4	rs56699372-G	0.220643	5E-11		0.017738229	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
968	chr10	50286522	50286524	rs56699372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q11.23	VSTM4	rs56699372-G	0.220659	4E-11		0.017836193	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50286522	50286524	rs56699372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q11.23	VSTM4	rs56699372-G	0.220674	1E-40		0.035947733	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50291399	50291400	rs12257242	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q11.23		rs12257242-G	0.27	6E-80		18.93	z score increase	Affymetrix [9061022] (imputed)	N
968	chr10	50298058	50298059	rs55872223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q11.23		rs55872223-?	NR	8E-8				NR [~ 8900000] (imputed)	N
968	chr10	50302894	50302895	rs7097933	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q11.23	NR	rs7097933-A	0.6266	3E-7	(Medial Orbitofrontal)	5.2923355	[3.26-7.32] unit increase	Affymetrix, Illumina [NR]	N
968	chr10	50303535	50303536	rs7084861	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10q11.23		rs7084861-C	0.764	9E-11				Affymetrix [10369434] (imputed)	N
968	chr10	50310028	50310034	rs541740030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q11.23	VSTM4	rs541740030-G	0.22294	4E-29		0.030134121	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr10	50310250	50310251	rs4240499	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q11.23	NR	rs4240499-C	0.3858	1E-17				NR [9056863] (imputed)	N
968	chr10	50313886	50313886	rs34327380	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	10q11.23	VSTM4	rs34327380-?	NR	7E-10		0.0582	NR L increase	Affymetrix [9390170] (imputed)	N
968	chr10	50315094	50315095	rs72785050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q11.23		rs72785050-C	NR	2E-30		0.0323	[0.027-0.038] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
968	chr10	50317533	50317533	rs5784791	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10q11.23	NR	rs5784791-AT	NR	9E-10		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
968	chr10	50320510	50320511	rs4364979	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q11.23		rs4364979-C	0.27	5E-33		11.97	z score increase	Affymetrix [9061022] (imputed)	N
968	chr10	50329742	50329743	rs4838449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	10q11.23		rs4838449-G	NR	5E-8		0.0405	[0.026-0.055] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
969	chr10	50333963	50333964	rs12240840	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	10q11.23	FAM170B-AS1	rs12240840-A	0.67	5E-6		1.25	[1.15-1.35]	Affymetrix, Illumina [~ 8500000] (imputed)	N
969	chr10	50335840	50335841	rs55648711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.23	NR	rs55648711-T	0.211162	1E-18				Affymetrix, Illumina [21126107] (imputed)	N
969	chr10	50374929	50374930	rs45563932	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q11.23		rs45563932-T	0.19	3E-24		10.17	z score increase	Affymetrix [9061022] (imputed)	N
969	chr10	50374929	50374930	rs45563932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q11.23		rs45563932-T	NR	2E-14		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
969	chr10	50374929	50374930	rs45563932	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q11.23	NR	rs45563932-T	0.2236	1E-17				NR [9056863] (imputed)	N
969	chr10	50374929	50374930	rs45563932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q11.23	C10orf128	rs45563932-T	0.220744	1E-12		0.019268986	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
969	chr10	50376393	50376394	rs72786903	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10q11.23	C2orf73	rs72786903-?		7E-10				NR [7428630] (imputed)	N
969	chr10	50376393	50376394	rs72786903	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q11.23	VSTM4, FAM170B, C10orf128	rs72786903-?		8E-19				NR [7428630] (imputed)	N
969	chr10	50379135	50379136	rs2068804	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	10q11.23	C10orf128	rs2068804-C	0.69	3E-6		1.1904762	[1.12-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
969	chr10	50452676	50452677	rs11101061	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	10q11.23	C10orf128, C10orf71-AS1	rs11101061-?	NR	1E-8		0.05433	[0.036-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
969	chr10	50453932	50453933	rs17009617	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	10q11.23	C10orf71	rs17009617-A	0.055	5E-6		0.45	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
970	chr10	50500458	50500459	rs17774576	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		10q11.23	C10orf71	rs17774576-C	NR	5E-6		0.3891	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
970	chr10	50507708	50507709	rs17774672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q11.23		rs17774672-A	NR	1E-19		0.0288	[0.023-0.035] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
970	chr10	50510405	50510406	rs10776558	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q11.23	CEFIP	rs10776558-C	0.53	3E-11		0.42	[0.3-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
970	chr10	50510405	50510406	rs10776558	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q11.23	CEFIP	rs10776558-C	0.5262	9E-10		0.4062	[0.28-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
970	chr10	50510521	50510522	rs2377965	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q11.23	NR	rs2377965-G	0.5284	1E-16		0.001871	[0.0014-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
970	chr10	50523747	50523748	rs117850870	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q11.23	Intergenic	rs117850870-C	NR	1E-6	(between families)	4.893	unit decrease	Affymetrix [up to 15107142] (imputed)	N
970	chr10	50528598	50528599	rs2889794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10q11.23	NR	rs2889794-G	NR	3E-11		0.0337	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
970	chr10	50534598	50534599	rs10857472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q11.23		rs10857472-A	NR	4E-8		0.0075	[0.0048-0.0102] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
970	chr10	50537012	50537013	rs11598726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.23		rs11598726-?	NR	3E-10				NR [~ 8900000] (imputed)	N
970	chr10	50542357	50542358	rs10776560	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q11.23	intergenic	rs10776560-T	0.4995	8E-17		0.0157	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
970	chr10	50561506	50561507	rs4838508	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	10q11.23	intergenic	rs4838508-?	NR	2E-6	(progression)			Illumina [NR]	N
970	chr10	50576632	50576633	rs12220898	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	10q11.23	DRGX	rs12220898-?	NR	1E-6	(Monocyte chemoattractant protein-1)			Affymetrix [2543887] (imputed)	N
970	chr10	50588097	50588098	rs147934589	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	10q11.23	NR	rs147934589-T	0.0172	9E-7		0.8075	[0.49-1.13] unit decrease	Illumina [NR] (imputed)	N
971	chr10	50667020	50667021	rs4253230	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q11.23	NR	rs4253230-A	0.01045	2E-8	(AGXT2)	0.1821	NR unit increase	Illumina [1671387] (imputed)	N
971	chr10	50681156	50681157	rs4253197	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10q11.23	ERCC6, CHAT	rs4253197-A	0.89	5E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
972	chr10	50805982	50805983	rs1917805	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-1-receptor antagonist levels	706 African American individuals	NA	10q11.23	CHAT	rs1917805-G	0.1	6E-7		0.09	unit increase	Affymetrix [5396780] (imputed)	N
972	chr10	50810890	50810891	rs11101179	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	10q11.23	CHAT	rs11101179-?	NR	9E-6		1.15	[1.08-1.23]	Illumina [5768242] (imputed)	N
972	chr10	50818873	50818874	rs8187735	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	10q11.23	SLC18A3 and CHAT	rs8187735-A	0.316	4E-11		0.03901		Illumina [243345]	N
972	chr10	50824105	50824106	rs41306415	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q11.23	NR	rs41306415-T	0.01045	1E-9	(CYB5R3)	0.1199	NR unit increase	Illumina [1671387] (imputed)	N
973	chr10	50895769	50895770	rs1258267	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	10q11.23	CHAT	rs1258267-A		5E-16	(Asian)	1.22	[NR]	Illumina [5245080] (imputed)	N
973	chr10	50895769	50895770	rs1258267	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	10q11.23	CHAT	rs1258267-A		3E-16		1.22	[NR]	Illumina [5245080] (imputed)	N
974	chr10	51013937	51013938	rs189819943	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10q11.23	RP11-507K13.6	rs189819943-C	0.0011	8E-7		1.6555	[1-2.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr10	51026704	51026705	rs8474	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q11.23	PARG	rs8474-C	0.4495	4E-12		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
974	chr10	51038546	51038547	rs17010387	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10q11.23		rs17010387-?	NR	4E-8		1.4545	[0.94-1.97] unit decrease	Affymetrix [NR] (imputed)	N
974	chr10	51049026	51049027	rs3793805	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q11.23	PARG	rs3793805-A	0.5659	7E-11		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
975	chr10	51118951	51118952	rs150223610	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PARG	rs150223610-?	NR	3E-9		1.96434	[NR] unit decrease	Affymetrix [NR] (imputed)	N
978	chr10	51524970	51524971	rs3123078	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	10q11.22	NR	rs3123078-?	NR	1E-19				Illumina [541129]	N
978	chr10	51526052	51526052	rs11460298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.22	NR	rs11460298-CT	0.448	4E-262	(Beta-microseminoprotein, MSMB.10620.21.3)	0.8	[0.76-0.84] unit increase	Affymetrix [10572788] (imputed)	N
978	chr10	51538168	51538169	rs10763567	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	10q11.22	TIMM23	rs10763567-A	0.489	6E-10		1.31	[1.19-1.44]	Illumina [~ 9400000] (imputed)	N
978	chr10	51543343	51543344	rs4631830	25434496	Kim S	2014-11-27	Gene	Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.	Prostate-specific antigen levels	554 Korean ancestry individuals	1,575 Korean ancestry individuals	10q11.22	MSMB	rs4631830-C	0.45	7E-11		0.12	[0.081-0.159] unit increase	Affymetrix [2163106] (imputed)	N
978	chr10	51546335	51546336	rs11006489	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q11.22	MSMB	rs11006489-G	0.59296875	1E-329	(MSMB, 10620_21_3)	0.84048057	[0.8-0.88] unit increase	Illumina [> 1000000] (imputed)	N
978	chr10	51548454	51548455	rs61847070	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.22	NR	rs61847070-C	0.084	4E-74	(Beta-microseminoprotein, MSMB.10620.21.3)	0.88	[0.78-0.98] unit decrease	Affymetrix [10572788] (imputed)	N
978	chr10	51549495	51549496	rs10993994	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	PSP94 plasma levels	400 French ancestry individuals	NA	10q11.22		rs10993994-C	NR	8E-49		0.73	[0.67-0.79] ng/mL decrease	Illumina [5201092] (imputed)	N
978	chr10	51549495	51549496	rs10993994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q11.22		rs10993994-C	0.553087598	6E-18		0.17997552	[0.14-0.22] unit decrease	Illumina [13406905] (imputed)	N
978	chr10	51549495	51549496	rs10993994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q11.22		rs10993994-C	NR	3E-53		0.2031	[0.18-0.23] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
978	chr10	51549495	51549496	rs10993994	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	10q11.22		rs10993994-?	NR	9E-34		1.23459	[1.2-1.27]	NR [680312]	N
978	chr10	51549495	51549496	rs10993994	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	10q11.22	NR	rs10993994-T	0.392245792	4E-40		1.2533711	[1.21-1.30]	Affymetrix, Illumina [20400945] (imputed)	N
978	chr10	51549495	51549496	rs10993994	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q11.22	NR	rs10993994-T	NR	9E-192		1.212	[1.20-1.23]	Affymetrix, Illumina [29235255] (imputed)	N
978	chr10	51549495	51549496	rs10993994	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	10q11.22	NR	rs10993994-T	0.47	1E-18		1.181	[1.14-1.23]	Affymetrix, Illumina [10186136] (imputed)	N
978	chr10	51549495	51549496	rs10993994	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	2,714 Hispanic cases, 5,239 Hispanic controls	NA	10q11.22	NR	rs10993994-T	0.349	1E-10		1.291	[1.19-1.39]	Affymetrix, Illumina [11334207] (imputed)	N
978	chr10	51549495	51549496	rs10993994	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	10q11.22	NR	rs10993994-T	0.614	4E-7		1.112	[1.07-1.16]	Affymetrix, Illumina [18877980] (imputed)	N
978	chr10	51549495	51549496	rs10993994	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	10q11.22	NR	rs10993994-T	NR	2E-52		1.24	NR	Affymetrix [at least 232408] (imputed)	N
978	chr10	51549495	51549496	rs10993994	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	10q11.22		rs10993994-T	NR	4E-53		1.2495	NR	Affymetrix [7846216] (imputed)	N
978	chr10	51549495	51549496	rs10993994	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	10q11.22		rs10993994-C	0.551629754	8E-18		0.8382297	[0.805164818-0.8726525]	Illumina [8919992] (imputed)	N
978	chr10	51549495	51549496	rs10993994	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	10q11.22	MSMB	rs10993994-T	0.455	5E-10		1.1641443	NR	Illumina [7742602] (imputed)	N
978	chr10	51549495	51549496	rs10993994	31226226	Du Z	2019-06-21	Int J Cancer	A Genome-wide Association Study of Prostate Cancer in Latinos.	Prostate cancer	2,714 Hispanic or Latin American cases, 5,239 Hispanic or Latin American controls	NA	10q11.22	MSMB	rs10993994-T	0.39	1E-10		1.29	[1.19-1.39]	Affymetrix, Illumina [10330976] (imputed)	N
978	chr10	51549495	51549496	rs10993994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10q11.22		rs10993994-?	NR	5E-9				NR [~ 8900000] (imputed)	N
978	chr10	51549495	51549496	rs10993994	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q11.22	NR	rs10993994-T	0.38	2E-147		1.23	[1.21-1.25]	Illumina [20370935] (imputed)	N
978	chr10	51549495	51549496	rs10993994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.22	MSMB	rs10993994-C	0.596	4E-589	(Beta-microseminoprotein, MSMB.10620.21.3)	0.98	[0.94-1.02] unit increase	Affymetrix [10572788] (imputed)	N
978	chr10	51549495	51549496	rs10993994	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	10q11.22	MSMB	rs10993994-T	0.39	1E-50		0.0843414	[0.073-0.095] unit increase	Affymetrix [10109774] (imputed)	N
978	chr10	51549495	51549496	rs10993994	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	10q11.22	MSMB	rs10993994-T	NR	4E-8		1.2048193	[NR]	Illumina [4550396] (imputed)	N
978	chr10	51549495	51549496	rs10993994	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	10q11.22	NR	rs10993994-T	0.401	7E-21		1.21	[1.16-1.25]	Affymetrix [up to 19977088] (imputed)	N
978	chr10	51549495	51549496	rs10993994	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	10q11.22	NR	rs10993994-T	0.4	3E-18	(European)	1.21	[1.16-1.26]	Affymetrix [up to 19977088] (imputed)	N
978	chr10	51549495	51549496	rs10993994	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	10q11.22	PARG, TIMM23, MSMB	rs10993994-T	0.39	1E-15		1.16	[1.12-1.20]	Illumina [1531807] (imputed)	N
978	chr10	51549495	51549496	rs10993994	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	10q11.22	MSMB	rs10993994-T		3E-26		0.4	[0.33-0.47] unit increase	Illumina [514432] (imputed)	N
978	chr10	51549495	51549496	rs10993994	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	10q11.22	MSMB	rs10993994-T	0.42	2E-7		1.32	[1.21-1.43]	Illumina [2639562] (imputed)	N
978	chr10	51549495	51549496	rs10993994	23555189	Chen Z	2013-04-01	Neoplasia	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals	NA	10q11.22	MSMB	rs10993994-T	0.41	1E-9		1.25	[1.18-1.32] unit increase	Illumina [3076666] (imputed)	N
978	chr10	51549495	51549496	rs10993994	23269536	Sun J	2012-12-27	Hum Genet	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	10q11.22	MSMB	rs10993994-T	0.50	5E-17		0.12	[NR] % increase	Illumina [> 709211] (imputed)	N
978	chr10	51549495	51549496	rs10993994	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	10q11.22	MSMB	rs10993994-T	NR	5E-6		1.18	[1.10-1.27]	Illumina [571243]	N
978	chr10	51549495	51549496	rs10993994	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	10q11.22	MSMB	rs10993994-T	0.39	7E-13		9.2	[NR] % increase	Illumina [304070]	N
978	chr10	51549495	51549496	rs10993994	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	10q11.22	MSMB	rs10993994-?	NR	3E-8				Illumina [510687]	N
978	chr10	51549495	51549496	rs10993994	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	10q11.22	MSMB	rs10993994-T	0.40	9E-29		1.25	[1.17-1.34]	Illumina [541129]	N
978	chr10	51549495	51549496	rs10993994	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	10q11.22	MSMB	rs10993994-T	0.40	7E-13		1.16	[1.04-1.29]	Illumina [527869]	N
978	chr10	51556920	51556921	rs10994385	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	10q11.22		rs10994385-C	0.3678	3E-6		4.661	z score decrease	Illumina [7275796] (imputed)	N
978	chr10	51558124	51558125	rs7076948	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q11.22		rs7076948-C	NR	4E-9		1.1098778	[1.07-1.15]	Affymetrix [7846216] (imputed)	N
978	chr10	51565547	51565548	rs7909927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs7909927-T	0.465064	1E-14				Affymetrix, Illumina [22063850] (imputed)	N
978	chr10	51565547	51565548	rs7909927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.22		rs7909927-?	NR	4E-14				NR [~ 8900000] (imputed)	N
978	chr10	51575534	51575535	rs75901817	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	10q11.22	NCOA4, TIMM23B	rs75901817-?	NR	2E-10		0.04409	[0.03-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
978	chr10	51575534	51575535	rs75901817	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q11.22	NCOA4, TIMM23B	rs75901817-?	NR	7E-36		0.08684	[0.073-0.1] unit increase novel	Illumina [6108953] (imputed)	N
978	chr10	51577840	51577841	rs17720193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q11.22		rs17720193-C	NR	3E-95		0.0893	[0.081-0.098] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.0484714	2E-31				Affymetrix, Illumina [24332387] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.034338	5E-27		0.055961	[0.046-0.066] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.0466099	5E-121				Affymetrix, Illumina [24246363] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.034351	8E-81		0.097117	[0.087-0.107] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.0480276	1E-100				Affymetrix, Illumina [20825802] (imputed)	N
978	chr10	51577840	51577841	rs17720193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q11.22	NR	rs17720193-C	0.034596	2E-65		0.092271	[0.082-0.103] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
978	chr10	51577840	51577841	rs17720193	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q11.22	NCOA4, TIMM23B	rs17720193-?	NR	2E-42		0.09483	[0.081-0.108] unit increase novel	Illumina [6108953] (imputed)	N
978	chr10	51577840	51577841	rs17720193	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.22	NR	rs17720193-C	NR	7E-9	(Asian)	0.0063	[0.0041-0.0085] unit decrease	NR [2500000] (imputed)	N
978	chr10	51577840	51577841	rs17720193	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.22	intergenic	rs17720193-C	NR	4E-11	(Asian)	0.0082	[0.0058-0.0106] unit decrease	NR [2500000] (imputed)	N
978	chr10	51580466	51580467	rs78937603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q11.22	NCOA4	rs78937603-C	0.860092	1E-8		0.0160764	[0.011-0.022] unit decrease	Affymetrix [NR] (imputed)	N
978	chr10	51580468	51580469	rs117273914	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10q11.22		rs117273914-?	NR	9E-9				Illumina [1128286]	N
978	chr10	51581142	51581143	rs17776547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q11.22		rs17776547-G	NR	1E-92		0.0884	[0.08-0.097] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
978	chr10	51581142	51581143	rs17776547	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q11.22		rs17776547-A	0.965	4E-36		0.38	[-0.44--0.32] % decrease	Affymetrix [NR] (imputed)	N
978	chr10	51581142	51581143	rs17776547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q11.22		rs17776547-?	NR	1E-65				NR [~ 8900000] (imputed)	N
978	chr10	51582893	51582894	rs41306524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	10q11.22	NR	rs41306524-C	0.862411	5E-11		0.035314	[0.025-0.046] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
978	chr10	51588889	51588890	rs74877435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q11.22		rs74877435-A	NR	5E-28		0.041	[0.034-0.048] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
978	chr10	51588889	51588890	rs74877435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q11.22		rs74877435-A	0.116649	1E-52		0.0877888	[0.077-0.099] unit increase	Illumina [13476266] (imputed)	N
978	chr10	51588889	51588890	rs74877435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	10q11.22		rs74877435-A	0.116696	5E-47		0.0835293	[0.072-0.095] unit increase	Illumina [13476299] (imputed)	N
978	chr10	51588889	51588890	rs74877435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	10q11.22	NR	rs74877435-G	0.892723	3E-45		0.095469	[0.082-0.109] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
978	chr10	51588889	51588890	rs74877435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	10q11.22	NR	rs74877435-G	0.892734	2E-40		0.090382	[0.077-0.104] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
978	chr10	51588889	51588890	rs74877435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.22		rs74877435-?	NR	5E-24				NR [~ 8900000] (imputed)	N
978	chr10	51593353	51593354	rs7085433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	10q11.22		rs7085433-A	0.154133	9E-13		0.030885	[0.022-0.039] unit decrease	Illumina [13479135] (imputed)	N
978	chr10	51593353	51593354	rs7085433	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	10q11.22	NCOA4, TIMM23B, TIMM23	rs7085433-G	0.894	1E-6		0.539	[0.33-0.75] unit decrease	Illumina [6007542] (imputed)	N
978	chr10	51593353	51593354	rs7085433	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	10q11.22	NCOA4, TIMM23B, TIMM23	rs7085433-G	0.894	7E-6				Illumina [6007542] (imputed)	N
978	chr10	51593353	51593354	rs7085433	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	10q11.22	NR	rs7085433-?	NR	3E-8				NR [2500000] (imputed)	N
978	chr10	51593353	51593354	rs7085433	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	10q11.22	MSMB, NCOA4, TIMM23	rs7085433-A	0.15	7E-9		0.095	[0.064-0.126] unit increase	Illumina [561583]	N
978	chr10	51593353	51593354	rs7085433	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	10q11.22	MSMB, NCOA4, TIMM23	rs7085433-A	0.15	6E-10		0.102	[0.071-0.133] unit increase	Illumina [561583]	N
979	chr10	51735344	51735345	rs67491774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q11.23	LINC00843	rs67491774-T	0.46257	9E-10		0.017225623	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
979	chr10	51757751	51757753	rs201917376	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	10q11.23	NR	rs201917376-CAT	0.0667	6E-7		0.3004	[0.18-0.42] unit increase	Illumina [10677593] (imputed)	N
980	chr10	51783303	51783304	rs4532987	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10q11.23		rs4532987-?	NR	5E-8		0.5853	[0.37-0.8] unit decrease	Affymetrix [NR] (imputed)	N
980	chr10	51783714	51783715	rs367757185	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10q11.23		rs367757185-?	NR	5E-8		0.5914	[0.38-0.8] unit decrease	Affymetrix [NR] (imputed)	N
980	chr10	51796961	51796962	rs11003438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q11.23		rs11003438-T	0.3888	9E-10	(conditional-joint)	0.009	[0.0061-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
980	chr10	51799687	51799688	rs114001906	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.23	NR	rs114001906-C	0.036	5E-53	(Neutral ceramidase, ASAH2.3212.30.3)	1.08	[0.94-1.22] unit decrease	Affymetrix [10572788] (imputed)	N
980	chr10	51801792	51801793	rs11003463	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q11.23		rs11003463-T	0.6114	6E-10		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
980	chr10	51801792	51801793	rs11003463	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q11.23	Intergenic	rs11003463-T	0.6114	2E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
981	chr10	51992579	51992580	rs1877558	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.23	NR	rs1877558-T	0.316	3E-90	(Neutral ceramidase, ASAH2.3212.30.3)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
981	chr10	52002547	52002548	rs12358630	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	10q11.23	ASAH2	rs12358630-?		2E-7	(additive)			NR [NR] (imputed)	N
981	chr10	52005270	52005271	rs7067773	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASAH2	5,363 Icelandic ancestry individuals	NA	10q11.23		rs7067773-G	0.0556	1E-84		0.785904	[0.71-0.86] unit decrease	Illumina [7506463] (imputed)	N
981	chr10	52005292	52005293	rs7077415	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	10q11.23	NR	rs7077415-?	NR	2E-9	(Neutral ceramidase)			Illumina [514227]	N
981	chr10	52006007	52006008	rs1369862	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.23	NR	rs1369862-G	0.386	3E-30	(Neutral ceramidase, ASAH2.3212.30.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
981	chr10	52007968	52007969	rs2813305	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	10q11.23	ASAH2	rs2813305-?		2E-7	(additive)			NR [NR] (imputed)	N
981	chr10	52008139	52008140	rs7071083	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASAH2	5,363 Icelandic ancestry individuals	NA	10q11.23		rs7071083-T	0.4759	2E-126		0.435225	[0.4-0.47] unit increase	Illumina [7506463] (imputed)	N
981	chr10	52009647	52009648	rs1898198	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	10q11.23	ASAH2	rs1898198-G	0.4816	1E-29	(N-CDase)	0.58733	[0.49-0.69] unit increase	Illumina [8683751] (imputed)	N
981	chr10	52010707	52010708	rs10508921	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	10q11.23	ASAH2	rs10508921-T	0.0607	6E-19	(N-CDase)	0.97683	[0.76-1.19] unit decrease	Illumina [8683751] (imputed)	N
981	chr10	52010707	52010708	rs10508921	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	10q11.23	ASAH2	rs10508921-T	0.13	9E-7	(AA-triglyceride response)	25.7	[15.47-35.93] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
981	chr10	52013433	52013434	rs1865749	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	10q11.23	NR	rs1865749-?		7E-8	(additive)			NR [NR] (imputed)	N
981	chr10	52018481	52018482	rs2842126	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q11.23	DYNC1I2P1	rs2842126-A	0.2299197	6E-34	(Neutral ceramidase)	0.6013	[0.51-0.69] unit decrease	Affymetrix [509946]	N
981	chr10	52018598	52018599	rs2813297	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q11.23	ASAH2	rs2813297-A	0.821875	5E-73	(ASAH2, 3212_30_3)	0.5657136	[0.51-0.63] unit increase	Illumina [> 1000000] (imputed)	N
981	chr10	52027608	52027609	rs10740617	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q11.23	ASAH2	rs10740617-C	0.794	2E-124	(Neutral ceramidase, ASAH2.3212.30.3)	0.67	[0.61-0.73] unit increase	Affymetrix [10572788] (imputed)	N
981	chr10	52032274	52032275	rs11597071	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	10q11.23	DYNC1I2P1	rs11597071-A	0.3375	6E-11	(N-CDase)	0.3878	[0.27-0.5] unit increase	Illumina [8683751] (imputed)	N
982	chr10	52038031	52038032	rs12411860	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q11.23	Intergenic	rs12411860-A	0.2895267	8E-13	(EA, Neutral ceramidase)	0.3485	[0.25-0.44] unit increase	Affymetrix [509946]	N
982	chr10	52061782	52061783	rs10159676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q11.23		rs10159676-?	NR	3E-8				NR [~ 8900000] (imputed)	N
982	chr10	52063167	52063168	rs74131273	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	10q11.23	ASAH2, SGMS1	rs74131273-A	0.7231	9E-6	(male)	0.0827	[0.046-0.119] unit increase	NR [NR] (imputed)	N
982	chr10	52064427	52064428	rs6481183	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q11.23	NR	rs6481183-?	NR	3E-16				Affymetrix [NR]	N
982	chr10	52069323	52069324	rs146075547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASAH2	5,363 Icelandic ancestry individuals	NA	10q11.23		rs146075547-A	0.02961	3E-64		0.914539	[0.81-1.02] unit decrease	Illumina [7506463] (imputed)	N
982	chr10	52069323	52069324	rs146075547	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	10q11.23	SGMS1	rs146075547-A	0.0178	6E-12	(N-CDase)	1.89239	[1.35-2.43] unit decrease	Illumina [8683751] (imputed)	N
982	chr10	52119296	52119297	rs2574975	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	10q11.23	SGMS1	rs2574975-?	NR	5E-6	(SF6)			Affymetrix [5476100] (imputed)	N
982	chr10	52120611	52120612	rs1436206	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q11.23	SGMS1	rs1436206-A	0.4846	2E-8		0.1068	[0.069-0.144] mmHg decrease	Affymetrix [NR] (imputed)	N
982	chr10	52129485	52129486	rs2574985	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q11.23	NR	rs2574985-A	0.2798	8E-6		0.0129	[0.0072-0.0186] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
982	chr10	52138441	52138442	rs2099527	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	10q11.23	NR	rs2099527-T	0.2818	1E-6		0.0193	[0.012-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
982	chr10	52156285	52156286	rs78829887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q11.23	NR	rs78829887-A	NR	4E-9		0.036	[0.024-0.048] unit increase	Affymetrix [9000000] (imputed)	N
983	chr10	52175938	52175939	rs7069115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.23		rs7069115-?	NR	4E-11				NR [~ 8900000] (imputed)	N
983	chr10	52259793	52259794	rs12251514	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q11.23	NR	rs12251514-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
983	chr10	52295363	52295364	rs61858108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q11.23		rs61858108-?	NR	3E-8				NR [~ 8900000] (imputed)	N
984	chr10	52336655	52336656	rs7921226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q11.23	Intergenic	rs7921226-A	0.817	4E-8	(MTAG)	0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
984	chr10	52337405	52337406	rs7072826	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q11.23		rs7072826-T	0.803	4E-8		0.008	[0.0041-0.0119] unit decrease	NR [NR] (imputed)	N
984	chr10	52352176	52352177	rs11006237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q11.23	Intergenic	rs11006237-C	0.8169	4E-8		0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
984	chr10	52352430	52352431	rs79828839	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q11.23	SGMS1	rs79828839-C	0.801215	2E-8		0.0145916	[0.0095-0.0197] unit decrease	Affymetrix [NR] (imputed)	N
984	chr10	52356263	52356264	rs10763587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q11.23	NR	rs10763587-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
984	chr10	52356263	52356264	rs10763587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q11.23		rs10763587-?	NR	3E-9				NR [~ 8900000] (imputed)	N
984	chr10	52373244	52373245	rs80276949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q11.23		rs80276949-A	NR	1E-9		0.0471	[0.032-0.062] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
984	chr10	52373244	52373245	rs80276949	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q11.23	SGMS1	rs80276949-G	0.977322	1E-11		0.0454698	[0.032-0.059] unit decrease	Affymetrix [NR] (imputed)	N
984	chr10	52373244	52373245	rs80276949	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q11.23	SGMS1	rs80276949-G	0.977325	2E-9		0.0420929	[0.028-0.056] unit decrease	Affymetrix [NR] (imputed)	N
984	chr10	52380641	52380642	rs76786359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q11.23	NR	rs76786359-G	NR	6E-10		0.0493	[0.034-0.065] unit increase	Affymetrix [9000000] (imputed)	N
984	chr10	52380641	52380642	rs76786359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q11.23	NR	rs76786359-G	NR	1E-12		0.0568	[0.041-0.072] unit increase	Affymetrix [9000000] (imputed)	N
984	chr10	52380641	52380642	rs76786359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q11.23	NR	rs76786359-G	NR	2E-11		0.0537	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
984	chr10	52380641	52380642	rs76786359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q11.23	NR	rs76786359-G	NR	6E-11		0.0524	[0.037-0.068] unit increase	Affymetrix [9000000] (imputed)	N
984	chr10	52427941	52427942	rs3001860	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	10q11.23	SGMS1	rs3001860-A	0.4142	1E-8	(Hex2Cer d18:2/16:0)	0.0903	[0.059-0.121] unit decrease	Illumina [~ 47000000] (imputed)	N
985	chr10	52550157	52550158	rs10821826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q11.23	NR	rs10821826-G	NR	3E-35		0.0414	[0.035-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr10	52550157	52550158	rs10821826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q11.23	NR	rs10821826-G	NR	7E-16		0.0269	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr10	52550157	52550158	rs10821826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q11.23	NR	rs10821826-G	NR	6E-17		0.0279	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52568615	52568616	rs4256922	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	10q11.23	ASAH2B, A1CF	rs4256922-C	0.85	1E-6		0.08	[0.049-0.111] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	2E-10		0.130655	[0.091-0.171] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	1E-8		0.114685	[0.075-0.154] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	5E-8		0.110923	[0.071-0.151] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	2E-9		0.121202	[0.082-0.161] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	2E-9		0.123116	[0.083-0.163] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	5E-8		0.112118	[0.072-0.152] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	5E-10		0.127525	[0.087-0.168] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	8E-10		0.125953	[0.086-0.166] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	2E-10		0.129833	[0.09-0.17] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	4E-8		0.112963	[0.073-0.153] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	2E-8		0.116714	[0.076-0.157] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	10q11.23		rs41274050-C	0.990137	1E-8		0.118137	[0.078-0.159] unit decrease	NR [11722792] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q11.23		rs41274050-T	NR	4E-23		0.1151	[0.092-0.138] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q11.23		rs41274050-T	NR	5E-9		0.069	[0.046-0.092] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	3E-29		0.116859	[0.097-0.137] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	3E-13		0.0790005	[0.058-0.1] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	4E-9		0.0598994	[0.039-0.081] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	3E-20		0.0891211	[0.069-0.109] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	5E-12		0.0729367	[0.052-0.094] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	4E-9		0.0650605	[0.043-0.087] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	2E-9		0.0521892	[0.034-0.071] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	10q11.23		rs41274050-?	NR	1E-22		0.100615	[0.08-0.121] unit increase	NR [9800000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q11.23	NR	rs41274050-T	NR	2E-25		0.1265	[0.1-0.15] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q11.23	NR	rs41274050-T	NR	3E-14		0.0922	[0.068-0.116] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q11.23	NR	rs41274050-T	NR	1E-14		0.0935	[0.07-0.117] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q11.23	NR	rs41274050-T	NR	2E-13		0.0887	[0.065-0.112] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q11.23	NR	rs41274050-T	NR	7E-23		0.1194	[0.096-0.143] unit increase	Affymetrix [9000000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q11.23	A1CF, ASAH2B	rs41274050-?	NR	4E-19		0.1172	[0.094-0.14] unit increase	Affymetrix [5701386] (imputed)	N
986	chr10	52573771	52573772	rs41274050	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q11.23	A1CF, ASAH2B	rs41274050-?	NR	4E-13		0.0932	[0.071-0.116] unit increase	Affymetrix [5701386] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q11.23	A1CF	rs41274050-T	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q11.23	A1CF	rs41274050-T	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q11.23	A1CF	rs41274050-T	NR	7E-7		0.106	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q11.23	A1CF	rs41274050-T	NR	2E-7	(EA)	0.108	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q11.23	A1CF	rs41274050-T	0.0089	4E-9		0.0881	[0.059-0.118] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q11.23	A1CF	rs41274050-T	0.0088	6E-13		0.1069	[0.078-0.136] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q11.23	A1CF	rs41274050-T	0.0088	6E-10		0.0923	[0.063-0.122] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
986	chr10	52573771	52573772	rs41274050	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	10q11.23	NR	rs41274050-T	NR	5E-19		0.095279835	[0.074-0.116] unit increase	Illumina [242289]	N
986	chr10	52573771	52573772	rs41274050	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	10q11.23	NR	rs41274050-T	0.0085	4E-9		0.097	unit increase	Illumina [242289]	N
986	chr10	52642515	52642516	rs151068477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q11.23		rs151068477-T	NR	2E-48		0.1878	[0.16-0.21] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
986	chr10	52642515	52642516	rs151068477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q11.23		rs151068477-T	NR	3E-9		0.0769	[0.052-0.102] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
986	chr10	52642515	52642516	rs151068477	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q11.23	A1CF	rs151068477-?		3E-8		0.3087	[0.2-0.42] unit decrease	Illumina [31500000] (imputed)	N
986	chr10	52643037	52643038	rs17592117	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q11.23	NR	rs17592117-T	0.87	9E-51		0.0421	[0.037-0.048] unit decrease	NR [NR]	N
986	chr10	52643077	52643078	rs7075575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10q11.23		rs7075575-G	NR	2E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
986	chr10	52645247	52645248	rs10994856	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	10q11.23	A1CF	rs10994856-G		1E-12		0.052	[0.038-0.066] mg/dl increase	NR [NR] (imputed)	N
986	chr10	52645247	52645248	rs10994856	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q11.23	A1CF	rs10994856-A	0.185	1E-14		0.0037	[0.0029-0.0045] unit increase	Affymetrix [NR] (imputed)	N
986	chr10	52645247	52645248	rs10994856	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q11.23	A1CF, ASAH2B	rs10994856-G	0.8781	1E-10		6.454	NR z score decrease	Illumina [26237160] (imputed)	N
986	chr10	52645247	52645248	rs10994856	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	10q11.23	A1CF	rs10994856-A	0.2	3E-13	(EA)	0.03785714	[0.028-0.048] unit increase	Illumina [1986983] (imputed)	N
986	chr10	52645247	52645248	rs10994856	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		10q11.23	A1CF	rs10994856-A	NR	5E-9		0.0075	[0.0051-0.0099] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
986	chr10	52645423	52645424	rs10994860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q11.23		rs10994860-T	NR	8E-67		0.0437	[0.039-0.049] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
986	chr10	52645423	52645424	rs10994860	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q11.23	A1CF	rs10994860-T	0.1679	7E-42		0.061	[0.052-0.07] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
986	chr10	52645423	52645424	rs10994860	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q11.23	A1CF	rs10994860-T	0.1801	1E-36		0.064207	[0.054-0.074] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
986	chr10	52645423	52645424	rs10994860	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q11.23	NR	rs10994860-T	0.1674	4E-29	(women)	0.0733	[0.061-0.086] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
986	chr10	52645423	52645424	rs10994860	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q11.23	NR	rs10994860-T	0.1623	2E-12	(men)	0.0523	[0.038-0.067] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
986	chr10	52645423	52645424	rs10994860	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q11.23	A1CF	rs10994860-T	0.1919	2E-24		0.0039	[0.0031-0.0047] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
986	chr10	52645423	52645424	rs10994860	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	10q11.23	A1CF	rs10994860-T	0.18	1E-12		0.0077	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
986	chr10	52646092	52646093	rs10821905	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	10q11.23		rs10821905-G	0.819957	9E-12		0.031592	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
986	chr10	52646092	52646093	rs10821905	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q11.23	A1CF	rs10821905-A	0.1845	5E-26		0.0037	[0.0029-0.0045] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
986	chr10	52646092	52646093	rs10821905	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	10q11.23	A1CF, ASAH2	rs10821905-A	0.18	7E-17		0.057	[0.043-0.071] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
986	chr10	52648453	52648454	rs10821907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q11.23		rs10821907-T	NR	5E-32		0.0281	[0.023-0.033] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
986	chr10	52648453	52648454	rs10821907	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	10q11.23	A1CF	rs10821907-T	0.191	1E-8		0.405	[0.27-0.54] unit increase	Affymetrix [NR] (imputed)	N
986	chr10	52648453	52648454	rs10821907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q11.23		rs10821907-?	NR	3E-8				NR [~ 8900000] (imputed)	N
986	chr10	52648453	52648454	rs10821907	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q11.23	A1CF, PRKG1	rs10821907-C	0.8276	5E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
986	chr10	52649770	52649771	rs4290173	25986216	Toyoda H	2015-05-15	Brain Behav Immun	A polymorphism in CCR1/CCR3 is associated with narcolepsy.	Narcolepsy with cataplexy	409 Japanese ancestry cases, 1,562 Japanese ancestry controls	240 Japanese ancestry cases, 869 Japanese ancestry controls	10q11.23	A1CF	rs4290173-C	0.902	5E-6		1.8	[1.4-2.32]	Affymetrix [525196]	N
986	chr10	52650501	52650502	rs7918123	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q11.23	NR	rs7918123-A	0.43	6E-9		0.0108	[0.0071-0.0145] unit increase	NR [NR]	N
986	chr10	52672888	52672889	rs12217285	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	10q11.23	A1CF, BC044765, PRKG1	rs12217285-G	0.48	2E-6		1.25	[1.16-1.34]	Affymetrix, Illumina [~ 8500000] (imputed)	N
986	chr10	52684599	52684600	rs10821947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q11.23	NR	rs10821947-T	NR	4E-11		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
987	chr10	52717438	52717439	rs140816252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q11.23	NR	rs140816252-T	0.0122	3E-8	(SHMT2)	0.6032	NR unit increase	Illumina [1671387] (imputed)	N
987	chr10	52734440	52734441	rs10995206	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q11.23		rs10995206-A	0.32	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
987	chr10	52734712	52734713	rs10822023	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q11.23	NR	rs10822023-A	0.3424	8E-9				NR [9056863] (imputed)	N
987	chr10	52739808	52739809	rs10995225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q11.23		rs10995225-?	NR	2E-25				NR [~ 8900000] (imputed)	N
987	chr10	52752879	52752880	rs10822055	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q11.23	PRKG1	rs10822055-A	0.2349	2E-15		0.0177	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
987	chr10	52761965	52761966	rs6479841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q11.23		rs6479841-?	NR	3E-14				NR [~ 8900000] (imputed)	N
987	chr10	52766037	52766038	rs2339686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q11.23		rs2339686-A	NR	3E-21		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
987	chr10	52780434	52780435	rs76442815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q11.23		rs76442815-C	0.125079	2E-8		0.0189462	[0.012-0.026] unit increase	Illumina [13479295] (imputed)	N
987	chr10	52780434	52780435	rs76442815	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q11.23	PRKG1	rs76442815-?	NR	1E-9		0.028760599	[0.019-0.038] unit increase	Illumina [27896057] (imputed)	N
987	chr10	52789354	52789355	rs6479874	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q11.23	intergenic	rs6479874-T	0.14	3E-7		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
988	chr10	52825431	52825432	rs10740127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q11.23		rs10740127-A	NR	2E-10		0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
988	chr10	52862124	52862125	rs762599689	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	10q21.1	PRKG1	rs762599689-A	0.0132	6E-6		0.6985	[0.4-1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
989	chr10	52957720	52957721	rs7897633	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	10q21.1	PRKG1, A1CF, CSTF2T	rs7897633-?	NR	3E-8	(EA)	1.6949153	[1.28-2.27]	Illumina [291943]	N
989	chr10	53080508	53080509	rs12249467	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q21.1	MIR605	rs12249467-A		3E-6		1.33	[NR]	Illumina [up to 9464381] (imputed)	N
990	chr10	53091091	53091092	rs72803194	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.1		rs72803194-C	0.709	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
990	chr10	53202343	53202344	rs16918171	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	10q21.1	PRKG1	rs16918171-C	NR	6E-7		0.448	[0.27-0.62] unit decrease	Illumina [7410776] (imputed)	N
991	chr10	53234176	53234177	rs7086422	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	10q21.1	NA	rs7086422-T	0.737762	8E-6		2.261929	NR	Illumina [5009928] (imputed)	N
991	chr10	53242702	53242703	rs293314	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	PRKG1	rs293314-G	0.056	7E-6	(Sitting height )	0.03	[NR] cm increase	Illumina [899892]	N
991	chr10	53254998	53254999	rs147455943	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	10q21.1	PRKG1	rs147455943-?	NR	5E-6	(EA)			Illumina [7205781] (imputed)	N
991	chr10	53262632	53262633	rs1952138	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.1	NR	rs1952138-C	0.766987149087672	3E-6	(IGP47)	0.1724	[0.1-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
991	chr10	53289880	53289881	rs10823137	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q21.1	PRKG1	rs10823137-A	0.7258	5E-6		0.0329	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
991	chr10	53290990	53290991	rs61849823	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.1	PRKG1	rs61849823-T	0.8357	3E-14		0.0195	[0.014-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
991	chr10	53290990	53290991	rs61849823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.1		rs61849823-?	NR	4E-27				NR [~ 8900000] (imputed)	N
991	chr10	53322703	53322703	rs113532758	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	10q21.1	PRKG1	rs113532758-?	NR	9E-8		5.339	NR unit decrease	Illumina [up to 1520000] (imputed)	N
992	chr10	53408125	53408126	rs118006792	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	10q21.1	PRKG1	rs118006792-C	NR	3E-6		1.33594	[0.78-1.89] unit increase	Illumina [at least 950000] (imputed)	N
992	chr10	53455561	53455562	rs14168	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	10q21.1	PRKG1, CSTF2T	rs14168-A	0.94	3E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
992	chr10	53476956	53476957	rs74632204	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q21.1	NR	rs74632204-G	0.0218688	5E-8		0.13093399	[0.084-0.178] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
993	chr10	53493472	53493473	rs7922491	21907864	Ferreira MA	2011-09-10	Lancet	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	10q21.1	PRKG1	rs7922491-A	0.11	5E-7		1.13	[1.08-1.19]	Illumina [NR] (imputed)	N
993	chr10	53516349	53516350	rs181259817	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10q21.1	NR	rs181259817-C	NR	4E-6	(GEE model)	0.92002	[0.53-1.31] unit decrease	NR [NR] (imputed)	N
993	chr10	53545097	53545098	rs140164788	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	10q21.1	PRKG1	rs140164788-T	NR	3E-7		1.68	[1.52-1.86]	Affymetrix, Illumina [~ 16900000] (imputed)	N
994	chr10	53635525	53635526	rs75580312	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK4	5,349 Icelandic ancestry individuals	NA	10q21.1		rs75580312-A	0.01414	7E-85		1.49151	[1.34-1.64] unit increase	Illumina [7506463] (imputed)	N
994	chr10	53635525	53635526	rs75580312	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK1	5,352 Icelandic ancestry individuals	NA	10q21.1		rs75580312-A	0.01414	2E-95		1.58209	[1.43-1.73] unit increase	Illumina [7506463] (imputed)	N
994	chr10	53649430	53649431	rs10823826	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q21.1	PRKG1	rs10823826-C	0.751302	2E-8		0.00897916	[0.0059-0.0121] unit decrease	Affymetrix [12370749]	N
994	chr10	53667442	53667443	rs10823860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.1	Intergenic	rs10823860-T	0.6998	3E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
994	chr10	53668889	53668890	rs11000060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.1		rs11000060-?	NR	4E-9				NR [~ 8900000] (imputed)	N
994	chr10	53673285	53673286	rs4595495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q21.1		rs4595495-G	NR	8E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
994	chr10	53673285	53673286	rs4595495	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.1	NR	rs4595495-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
994	chr10	53673285	53673286	rs4595495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.1		rs4595495-?	NR	2E-10				NR [~ 8900000] (imputed)	N
994	chr10	53674794	53674795	rs1892368	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	10q21.1		rs1892368-?	NR	3E-6		0.035	[0.019-0.051] unit decrease	Affymetrix [9906178] (imputed)	N
994	chr10	53674794	53674795	rs1892368	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	10q21.1		rs1892368-?	NR	2E-8		0.051	[0.033-0.069] unit decrease	Affymetrix [9906178] (imputed)	N
994	chr10	53677312	53677313	rs10823893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q21.1	NA	rs10823893-A	0.407	2E-10		0.0124	[0.0087-0.0161] unit increase	NR [~ 27400000] (imputed)	N
994	chr10	53677312	53677313	rs10823893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q21.1	NA	rs10823893-A	0.407	2E-10		0.0124	[0.0087-0.0161] unit increase	NR [~ 27400000] (imputed)	N
994	chr10	53678025	53678026	rs1937680	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.1	NR	rs1937680-A	0.6658	3E-7	(EA)	0.0341	[0.021-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
994	chr10	53680106	53680107	rs12245197	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.1	Intergenic	rs12245197-T	0.4835	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
994	chr10	53681793	53681794	rs11000137	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q21.1	intergenic	rs11000137-T	0.17	3E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
994	chr10	53683346	53683347	rs2879627	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q21.1	PRKG1	rs2879627-A	0.1961	3E-6		0.0348	[0.02-0.05] unit increase	NR [8041861] (imputed)	N
994	chr10	53683970	53683971	rs79782488	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.1	NR	rs79782488-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr10	53762920	53762921	rs2454539	34101054	Nikopensius T	2021-06-08	Clin Rheumatol	Association analysis of juvenile idiopathic arthritis genetic susceptibility factors in Estonian patients.	Arthritis (juvenile idiopathic)	263 Estonian ancestry cases, 6,956 Estonian ancestry controls	NA	10q21.1	PRKG1	rs2454539-?	NR	3E-6		1.501	[1.261-1.787] unit increase	Illumina [16583468] (imputed)	N
995	chr10	53789666	53789667	rs10762540	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	10q21.1		rs10762540-C	0.45	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
995	chr10	53794531	53794532	rs10823991	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait rhythm	2,946 individuals	NA	10q21.1	PRKG1	rs10823991-A	0.27	1E-6		0.138	[0.083-0.193] unit increase	Illumina [6200000] (imputed)	N
995	chr10	53811430	53811431	rs10824002	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q21.1	NR	rs10824002-?	NR	4E-6		3.7	[2.92-4.69]	Illumina [539000] (imputed)	N
995	chr10	53818148	53818149	rs12268753	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	10q21.1	CSTF2T, DKK1, PRKG1	rs12268753-C	0.21	2E-8		0.3	[0.2-0.4] unit increase	Illumina [7797256] (imputed)	N
995	chr10	53821850	53821851	rs77974561	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.1	PRKG1	rs77974561-A	0.0546	2E-11		0.0281	[0.02-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
995	chr10	53848676	53848677	rs186074538	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	10q21.1	NR	rs186074538-?	NR	2E-6		0.6424	[0.36-0.93] unit decrease	Illumina [at least 560000] (imputed)	N
995	chr10	53870574	53870575	rs3862583	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	10q21.1	PRKG1	rs3862583-?		6E-6	(EA)	0.22263066	[0.13-0.32] unit decrease	Illumina [13620258] (imputed)	N
995	chr10	53870574	53870575	rs3862583	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	10q21.1	PRKG1	rs3862583-?		6E-6	(African American)	0.22263066	[0.13-0.32] unit decrease	Illumina [13620258] (imputed)	N
996	chr10	53889254	53889255	rs12259288	29967566	Roberts CH	2018-06-03	Mediators Inflamm	Pathway-Wide Genetic Risks in Chlamydial Infections Overlap between Tissue Tropisms: A Genome-Wide Association Scan.	Anti-chlamydia trachomatis IgG seropositivity	71 Dutch ancestry cases, 169 Dutch ancestry controls	NA	10q21.1	PRKG1	rs12259288-A	0.667	6E-7		1.2345679		Illumina [9443221] (imputed)	N
996	chr10	53940525	53940526	rs61847303	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q21.1	NR	rs61847303-?	NR	2E-8		1.0630043	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
996	chr10	53944441	53944442	rs61847307	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q21.1	PRKG1	rs61847307-C	NR	5E-7		1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
996	chr10	53944441	53944442	rs61847307	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q21.1	PRKG1	rs61847307-C	NR	1E-6	(EA)	1.0616838	[1.04-1.09]	Illumina [6627481] (imputed)	N
996	chr10	53944441	53944442	rs61847307	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10q21.1	intergenic	rs61847307-C	NR	4E-7		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
996	chr10	53944441	53944442	rs61847307	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	10q21.1	PRKG1	rs61847307-?		3E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
996	chr10	53944441	53944442	rs61847307	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.1	NR	rs61847307-C	NR	4E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
996	chr10	53966123	53966124	rs1194491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs1194491-?	NR	3E-13				NR [~ 8900000] (imputed)	N
996	chr10	53966916	53966917	rs185811602	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	10q21.1	PRKG1	rs185811602-T	0.0011	1E-8		6.37	[3.38-11.97]	Illumina [11310926] (imputed)	N
996	chr10	53983257	53983258	rs1729578	28265120	Polimanti R	2017-03-07	Mol Psychiatry	A genome-wide gene-by-trauma interaction study of alcohol misuse in two independent cohorts identifies PRKG1 as a risk locus.	Alcohol misuse (trauma interaction)	1,748 African American trauma-exposed individuals, 643 African American trauma-unexposed individuals, 10,732 European ancestry trauma-exposed and unexposed individuals, 3,238 Hispanic trauma-exposed and unexposed individuals	2,738 African American trauma-exposed individuals, 1,591 African American trauma-unexposed individuals, 3,755 European ancestry trauma-exposed and unexposed individuals	10q21.1	PRKG1	rs1729578-C	0.23	2E-8	(AA)	5.64	z score increase	Illumina [NR] (imputed)	N
997	chr10	54069402	54069403	rs7906360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs7906360-?	NR	3E-16				NR [~ 8900000] (imputed)	N
997	chr10	54119879	54119880	rs7097068	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK4	5,349 Icelandic ancestry individuals	NA	10q21.1		rs7097068-G	0.421	1E-39		0.243911	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
997	chr10	54119879	54119880	rs7097068	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK1	5,352 Icelandic ancestry individuals	NA	10q21.1		rs7097068-G	0.421	7E-48		0.268887	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
997	chr10	54129653	54129654	rs7093925	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.1		rs7093925-A	0.43	4E-37		0.1064	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
997	chr10	54130752	54130753	rs112125027	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q21.1	DKK1	rs112125027-A	0.94	5E-6	(Age 20-60 years)	0.1042	[0.060-0.149] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
998	chr10	54134727	54134728	rs1194614	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q21.1	NR	rs1194614-T	0.42375	1E-31	(DKK1, 3535_84_1)	0.28925818	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
998	chr10	54134727	54134728	rs1194614	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q21.1	NR	rs1194614-T	0.42375	1E-25	(DKK4, 3365_7_2)	0.26094168	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
998	chr10	54141651	54141652	rs1194673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	DKK1	rs1194673-A	0.632	3E-12	(Dickkopf-related protein 1, DKK1.3535.84.1)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
998	chr10	54154619	54154620	rs1660760	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	10q21.1	LNCAROD-DKK1	rs1660760-T	NR	3E-8		0.7842		Illumina [up to 1244428] (imputed)	N
998	chr10	54199811	54199812	rs1194708	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	10q21.1	DKK1, MBL2	rs1194708-?	NR	2E-8		1.098901	[1.06-1.14]	Illumina [13537761] (imputed)	N
998	chr10	54203647	54203648	rs182082076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs182082076-?	NR	2E-16				NR [~ 8900000] (imputed)	N
998	chr10	54212596	54212597	rs1194743	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	10q21.1	BC015429	rs1194743-?	NR	2E-9				Affymetrix, Illumina [22000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	8E-15	(26 ms)	0.0510862	[0.038-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	4E-20	(30 ms)	0.0597357	[0.047-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	3E-8	(44 ms)	0.0352459	[0.022-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	3E-15	(38 ms)	0.0501695	[0.037-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	2E-20	(32 ms)	0.0598067	[0.047-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	2E-19	(34 ms)	0.0580213	[0.045-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	2E-18	(36 ms)	0.0562712	[0.043-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	2E-10	(22 ms)	0.0416674	[0.029-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	1E-9	(42 ms)	0.0388896	[0.026-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	1E-17	(28 ms)	0.0554308	[0.043-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	1E-12	(24 ms)	0.0468332	[0.034-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.234295	1E-11	(40 ms)	0.0432437	[0.03-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	10q21.1	NR	rs1733724-?	NR	1E-6		0.5592718	[0.33-0.78] unit decrease	Illumina [26566045] (imputed)	N
998	chr10	54223976	54223977	rs1733724	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q21.1	DKK1	rs1733724-?	NR	4E-8	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
998	chr10	54223976	54223977	rs1733724	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q21.1	DKK1	rs1733724-?	NR	2E-14	(EA)	32.94	[24.51-41.37] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
998	chr10	54223976	54223977	rs1733724	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q21.1	DKK1	rs1733724-?	NR	3E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
998	chr10	54223976	54223977	rs1733724	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	10q21.1	DKK1	rs1733724-A	0.25	1E-7	(European)	0.49	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
998	chr10	54223976	54223977	rs1733724	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	10q21.1	DKK1	rs1733724-A		7E-8		0.48	[0.3-0.66] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
998	chr10	54223976	54223977	rs1733724	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	10q21.1	DKK1	rs1733724-A	0.25	3E-8		0.49	[0.31-0.67] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
998	chr10	54223976	54223977	rs1733724	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	10q21.1	DKK1	rs1733724-T	0.21	7E-8	(QRS duration)	5.62	[3.58-7.66] % s.d. increase	Illumina [306060]	N
998	chr10	54253815	54253816	rs10762762	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	10q21.1	PRKG1, DKK1, LINC01468, LOC105378305	rs10762762-?	NR	1E-7	(EA)	0.01	[0.0094-0.0106] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
999	chr10	54334652	54334653	rs7905367	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	10q21.1		rs7905367-G	NR	4E-6		0.00451627	[0.0026-0.0064] years increase	NR [7400000] (imputed)	N
999	chr10	54334652	54334653	rs7905367	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	10q21.1		rs7905367-G	NR	2E-13		0.00996946	[0.0073-0.0127] years increase	NR [7400000] (imputed)	N
999	chr10	54334652	54334653	rs7905367	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	10q21.1		rs7905367-G	NR	2E-6		0.00533949	[0.0032-0.0075] years decrease	NR [7400000] (imputed)	N
999	chr10	54334652	54334653	rs7905367	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	10q21.1		rs7905367-G	NR	5E-12		0.027101126	[0.019-0.035] years increase	NR [7400000] (imputed)	N
999	chr10	54334652	54334653	rs7905367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q21.1		rs7905367-?	NR	1E-12				NR [~ 8900000] (imputed)	N
999	chr10	54334652	54334653	rs7905367	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q21.1	NR	rs7905367-G	0.203191	1E-14		0.0294377	[0.022-0.037] unit increase	NR [19129689] (imputed)	N
999	chr10	54334652	54334653	rs7905367	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	10q21.1	DKK1, MBL2	rs7905367-?	NR	4E-15		0.038	[0.047-0.028] unit decrease	Illumina [12039491] (imputed)	N
999	chr10	54341872	54341873	rs2222800	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	10q21.1	LOC399774	rs2222800-A		4E-6		0.04	[0.02-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
999	chr10	54365957	54365958	rs139326003	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	10q21.1	MBL2	rs139326003-A	NR	2E-7	(Perc15, Cases)	4.2	[2.34-6.06] unit increase	Illumina [7600000] (imputed)	N
999	chr10	54370689	54370690	rs1919757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q21.1		rs1919757-G	NR	3E-8		0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1000	chr10	54397913	54397914	rs117400692	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs117400692-C	0.97755	7E-47		0.0936642	[0.081-0.106] unit decrease	NR [13737936] (imputed)	N
1000	chr10	54412480	54412481	rs17662822	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs17662822-C	0.676284	3E-110		0.050169	[0.046-0.055] unit increase	NR [13737936] (imputed)	N
1000	chr10	54412480	54412481	rs17662822	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs17662822-?	NR	3E-81		0.0413647	[0.037-0.046] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54412480	54412481	rs17662822	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs17662822-C	0.67446	4E-11	(men)	0.0363083	[0.026-0.047] unit increase	NR [17166351] (imputed)	N
1000	chr10	54412480	54412481	rs17662822	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs17662822-C	0.674451	7E-27		0.0388431	[0.032-0.046] unit increase	NR [17166351] (imputed)	N
1000	chr10	54412480	54412481	rs17662822	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs17662822-C	0.674443	3E-15	(women)	0.0375892	[0.028-0.047] unit increase	NR [17166351] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.1		rs1159798-A	0.23	5E-65		0.1869	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs1159798-A	0.22066	4E-41		0.0330633	[0.028-0.038] unit increase	NR [13737936] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs1159798-?	NR	4E-182		0.0700856	[0.065-0.075] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q21.1	NR	rs1159798-A	0.2402	1E-9		0.0429	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs1159798-A	0.224808	1E-40	(women)	0.0725609	[0.062-0.083] unit increase	NR [17166351] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs1159798-A	0.224231	9E-67		0.0686681	[0.061-0.077] unit increase	NR [17166351] (imputed)	N
1000	chr10	54412492	54412493	rs1159798	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs1159798-A	0.22357	2E-24	(men)	0.0596811	[0.048-0.072] unit increase	NR [17166351] (imputed)	N
1000	chr10	54413403	54413404	rs74394067	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs74394067-G	0.97422	2E-23		0.0598319	[0.048-0.072] unit increase	NR [13737936] (imputed)	N
1000	chr10	54413403	54413404	rs74394067	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs74394067-?	NR	1E-68		0.113506	[0.1-0.13] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54413908	54413909	rs11002936	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs11002936-?	NR	3E-76		0.0406005	[0.036-0.045] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54415440	54415441	rs145064177	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q21.1		rs145064177-A	NR	7E-7		3.2688	[2.01-4.53] unit increase	Illumina [NR] (imputed)	N
1000	chr10	54415686	54415687	rs12251299	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA		MBL2	rs12251299-C	0.873282	1E-280		0.127788	[0.12-0.13] unit increase	NR [13737936] (imputed)	N
1000	chr10	54418742	54418743	rs11002954	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs11002954-?	NR	4E-300		0.111629	[0.11-0.12] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54419938	54419939	rs12250150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs12250150-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1000	chr10	54420222	54420223	rs7070913	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	10q21.1	NR	rs7070913-?	0.883202962577343	4E-7		0.084283836	[0.052-0.117] SD units increase	Illumina [11603265] (imputed)	N
1000	chr10	54420222	54420223	rs7070913	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs7070913-?	NR	1E-300		0.138494	[0.13-0.15] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54421396	54421397	rs56861435	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs56861435-?	NR	9E-66		0.1708	[0.15-0.19] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54422871	54422872	rs12256387	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	10q21.1	MBL2	rs12256387-A	0.100235	2E-8		0.0684	[0.044-0.092] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1000	chr10	54422871	54422872	rs12256387	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	10q21.1	MBL2	rs12256387-A	0.100235	1E-6		0.0529	[0.032-0.074] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1000	chr10	54423397	54423398	rs7898709	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.1		rs7898709-T	0.89	1E-74		0.2595	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1000	chr10	54423852	54423853	rs12258451	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q21.1	NR	rs12258451-C	0.8842	4E-14	(European)	0.0752	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1000	chr10	54423852	54423853	rs12258451	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q21.1	NR	rs12258451-C	0.8693	2E-15		0.0702	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1000	chr10	54425324	54425325	rs10824760	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	10q21.1	NR	rs10824760-T	0.8217	3E-9		0.0886	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1000	chr10	54426488	54426489	rs7099953	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs7099953-?	NR	1E-300		0.138618	[0.13-0.15] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54426488	54426489	rs7099953	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7099953-G	0.893031	2E-62	(men)	0.130641	[0.11-0.15] unit increase	NR [17166351] (imputed)	N
1000	chr10	54426488	54426489	rs7099953	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7099953-G	0.892658	6E-138		0.131276	[0.12-0.14] unit increase	NR [17166351] (imputed)	N
1000	chr10	54426488	54426489	rs7099953	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7099953-G	0.892332	1E-76	(women)	0.135164	[0.12-0.15] unit increase	NR [17166351] (imputed)	N
1000	chr10	54427824	54427825	rs1373004	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q21.1	MBL2	rs1373004-T	0.13	2E-12		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1000	chr10	54434510	54434511	rs11003047	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	10q21.1	MBL2, DKK1	rs11003047-G	0.11	1E-32		1.09	[1.07-1.10]	Affymetrix, Illumina [2539801] (imputed)	N
1000	chr10	54434528	54434529	rs11003048	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	10q21.1	MBL2	rs11003048-C	0.8953	8E-58		0.078	[0.068-0.088] unit decrease	NR [13977204] (imputed)	N
1000	chr10	54435421	54435422	rs6480949	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	10q21.1	MBL2	rs6480949-T	0.11	4E-7		0.09	[0.051-0.129] unit decrease	Illumina [11973598] (imputed)	N
1000	chr10	54437605	54437606	rs11003050	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	10q21.1	MBL2	rs11003050-A	0.11	4E-7		0.09	[0.051-0.129] unit decrease	Illumina [11973598] (imputed)	N
1000	chr10	54439727	54439728	rs7902708	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1	MBL2/DKK1	rs7902708-?	NR	3E-393				Affymetrix [20259828] (imputed)	N
1000	chr10	54439727	54439728	rs7902708	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	10q21.1	MBL2, DKK1	rs7902708-G	0.89	1E-8	(BUA)	0.07	[0.05-0.10] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1000	chr10	54439727	54439728	rs7902708	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	10q21.1	MBL2, DKK1	rs7902708-G	0.88	5E-15	(VOS)	0.09	[0.07-0.12] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1000	chr10	54460782	54460783	rs12218358	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.1	LNCAROD	rs12218358-C	0.5639	6E-10		0.0118	[0.0081-0.0155] unit increase	Affymetrix [18391927] (imputed)	N
1000	chr10	54460782	54460783	rs12218358	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs12218358-G	0.437049	1E-49		0.0281679	[0.024-0.032] unit decrease	NR [13737936] (imputed)	N
1000	chr10	54460782	54460783	rs12218358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.1		rs12218358-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1000	chr10	54460782	54460783	rs12218358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs12218358-?	NR	7E-58				NR [~ 8900000] (imputed)	N
1000	chr10	54463899	54463900	rs7088220	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs7088220-?	NR	2E-54		0.031221	[0.027-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1000	chr10	54463899	54463900	rs7088220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7088220-C	0.447119	2E-8	(women)	0.025026	[0.016-0.034] unit decrease	NR [17166351] (imputed)	N
1000	chr10	54463899	54463900	rs7088220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7088220-C	0.446683	5E-19		0.0297486	[0.023-0.036] unit decrease	NR [17166351] (imputed)	N
1000	chr10	54463899	54463900	rs7088220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q21.1	MBL2	rs7088220-C	0.446183	2E-12	(men)	0.0351584	[0.025-0.045] unit decrease	NR [17166351] (imputed)	N
1000	chr10	54464861	54464862	rs138491068	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs138491068-?	NR	1E-9		0.0379315	[0.025-0.051] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr10	54470780	54470780	rs764192132	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs764192132-?	NR	3E-48		0.0295729	[0.025-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1000	chr10	54486919	54486920	rs185671464	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q21.1	Intergenic	rs185671464-C	0.999	2E-6	(AA)	0.326	unit increase	Illumina [NR] (imputed)	N
1000	chr10	54519149	54519150	rs11003118	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	NR	rs11003118-C	0.291	2E-341	(Mannose-binding protein C, MBL2.3000.66.1)	0.89	[0.85-0.93] unit decrease	Affymetrix [10572788] (imputed)	N
1000	chr10	54525508	54525509	rs2506	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q21.1	RP11-556E13.1, MBL2	rs2506-C	0.2354418	6E-16	(EA, Mannose-binding protein C)	0.4042	[0.31-0.5] unit decrease	Affymetrix [509946]	N
1001	chr10	54529256	54529257	rs1838065	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBL2	5,368 Icelandic ancestry individuals	NA	10q21.1		rs1838065-G	0.3494	6E-181		0.528532	[0.49-0.56] unit increase	Illumina [7506463] (imputed)	N
1001	chr10	54531225	54531226	rs1800451	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBL2	5,368 Icelandic ancestry individuals	NA	10q21.1		rs1800451-T	0.01105	2E-49		1.29498	[1.12-1.47] unit decrease	Illumina [7506463] (imputed)	N
1001	chr10	54531225	54531226	rs1800451	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	NR	rs1800451-T	0.022	2E-51	(Mannose-binding protein C, MBL2.3000.66.1)	1.22	[1.06-1.38] unit decrease	Affymetrix [10572788] (imputed)	N
1001	chr10	54531234	54531235	rs1800450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBL2	5,368 Icelandic ancestry individuals	NA	10q21.1		rs1800450-T	0.1399	3E-293		0.90079	[0.85-0.95] unit decrease	Illumina [7506463] (imputed)	N
1001	chr10	54531241	54531242	rs5030737	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MBL2	5,368 Icelandic ancestry individuals	NA	10q21.1		rs5030737-A	0.05074	2E-12		0.303033	[0.22-0.39] unit decrease	Illumina [7506463] (imputed)	N
1001	chr10	54534612	54534613	rs10824796	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q21.1	MBL2	rs10824796-A	0.2231156	1E-89	(Mannose-binding protein C)	0.9492	[0.87-1.03] unit decrease	Affymetrix [509946]	N
1001	chr10	54535839	54535840	rs2384046	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	10q21.1	NR	rs2384046-?	NR	3E-59	(MBL)			Illumina [~ 4000000] (imputed)	N
1001	chr10	54536838	54536839	rs7899547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q21.1	MBL2	rs7899547-G	0.64265625	3E-361	(MBL2, 3000_66_1)	0.91527146	[0.88-0.95] unit increase	Illumina [> 1000000] (imputed)	N
1001	chr10	54536838	54536839	rs7899547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	MBL2	rs7899547-G	0.653	9E-479	(Mannose-binding protein C, MBL2.3000.66.1)	0.95	[0.91-0.99] unit increase	Affymetrix [10572788] (imputed)	N
1001	chr10	54536838	54536839	rs7899547	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q21.1	NR	rs7899547-?	NR	2E-102	(EA, Mannose-binding protein C)			Affymetrix [509946]	N
1001	chr10	54544241	54544242	rs5784945	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q21.1	Intergenic	rs5784945-?	0.2162298	4E-20	(EA, Mannose-binding protein C)	0.4896	[0.39-0.59] unit increase	Affymetrix [509946]	N
1001	chr10	54574995	54574996	rs6480975	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q21.1	MBL2	rs6480975-C	0.84	3E-6	(EA)	1.21	[1.12-1.32]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1001	chr10	54574995	54574996	rs6480975	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q21.1	MBL2	rs6480975-C	0.84	2E-6		1.21	[1.12-1.32]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1001	chr10	54593325	54593326	rs182344828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q21.1	Intergenic	rs182344828-G	1.0	3E-7	(AA)	0.645	unit increase	Illumina [NR] (imputed)	N
1001	chr10	54597338	54597339	rs536574218	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	MBL2	rs536574218-T	0.999596	6E-9		0.146167	[0.097-0.195] unit increase	NR [13737936] (imputed)	N
1001	chr10	54624621	54624622	rs11003226	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	DKK1	rs11003226-?	NR	9E-6	(dimethylglycine)	0.15750997	[0.088-0.227] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1001	chr10	54632544	54632545	rs12570523	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	NR	rs12570523-T	0.51	1E-76	(Mannose-binding protein C, MBL2.3000.66.1)	0.44	[0.4-0.48] unit increase	Affymetrix [10572788] (imputed)	N
1001	chr10	54632799	54632800	rs67316945	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.1	NR	rs67316945-T	0.433	4E-111	(Mannose-binding protein C, MBL2.3000.66.1)	0.54	[0.5-0.58] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr10	54680019	54680020	rs73347124	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	10q21.1	NR	rs73347124-?	NR	2E-6	(AA)	5.0	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr10	54816657	54816658	rs182002046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs182002046-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1004	chr10	54938397	54938398	rs2891431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs2891431-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1005	chr10	55122265	55122266	rs41391044	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	10q21.1		rs41391044-T	0.846063	5E-6		0.0176253	[0.01-0.025] unit decrease	Illumina [13900000] (imputed)	N
1006	chr10	55196112	55196113	rs117905623	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	10q21.1	intergenic	rs117905623-T	NR	2E-8		0.381	[0.25-0.51] unit decrease	Affymetrix [7701190] (imputed)	N
1006	chr10	55196870	55196871	rs7078885	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (total)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	10q21.1	RN5S318, PCDH15	rs7078885-?	NR	3E-6		0.1	[NR] unit increase	Illumina [> 2600000] (imputed)	N
1006	chr10	55266230	55266231	rs10825036	25867717	Song N	2015-04-13	PLoS One	Prediction of breast cancer survival using clinical and genetic markers by tumor subtypes.	Disease-free survival in breast cancer	1,732 Korean ancestry cases	1,494 Korean ancestry cases	10q21.1	PCDH15	rs10825036-G	0.32	4E-7	(HR- HER2-)	2.26	[1.34-3.81]	Affymetrix [2210580] (imputed)	N
1006	chr10	55294873	55294874	rs583012	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	10q21.1	intergenic	rs583012-?	NR	2E-6	(CRP2)			Affymetrix [70897]	N
1007	chr10	55335279	55335280	rs17695549	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	10q21.1		rs17695549-?	NR	9E-6		1.36331	[1.23-1.5]	NR [673172]	N
1007	chr10	55337854	55337855	rs11003686	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	10q21.1	NR	rs11003686-A	0.1	9E-6		2.06	[1.50-2.84]	Illumina [17125421] (imputed)	N
1007	chr10	55384742	55384743	rs12256830	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q21.1	PCDH15	rs12256830-?		2E-10	(Hispanic)			Illumina [NR]	N
1007	chr10	55407090	55407091	rs7077606	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	10q21.1	PCDH15	rs7077606-T	0.12	5E-7	(AA-glucose response)	5.44	[3.32-7.56] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1007	chr10	55420249	55420250	rs76727463	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	10q21.1	Intergenic	rs76727463-G	0.8805	6E-6		0.7484	[0.43-1.07] unit decrease	Illumina [9520174] (imputed)	N
1008	chr10	55480887	55480888	rs72793138	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.1	NR	rs72793138-A	NR	4E-6		1.14	[NR]	Illumina [7158791] (imputed)	N
1008	chr10	55491509	55491510	rs7075455	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	10q21.1	MBL2, PCDH15	rs7075455-G	NR	5E-6		0.162435	[0.093-0.232] unit decrease	Illumina [at least 950000] (imputed)	N
1008	chr10	55526556	55526557	rs7922420	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	MBL2	rs7922420-?	NR	6E-6	(methionine)	0.20548637	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1008	chr10	55566506	55566507	rs201255786	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	10q21.1	PCDH15	rs201255786-?	NR	2E-6	(East and South Asian)			NR [at least 880000]	N
1009	chr10	55701119	55701120	rs75465005	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q21.1		rs75465005-C	NR	5E-6		2.6874	[1.56-3.81] unit increase	Illumina [NR] (imputed)	N
1010	chr10	55783145	55783146	rs4146645	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	10q21.1	PCDH15	rs4146645-A	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1010	chr10	55785187	55785188	rs11004008	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.1	NR	rs11004008-G	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1010	chr10	55795009	55795010	rs72794963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.1		rs72794963-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1011	chr10	55897070	55897071	rs78737652	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q21.1	PCDH15	rs78737652-A	0.993	3E-6	(AA)	0.18	NR unit increase	Illumina [NR] (imputed)	N
1011	chr10	55913699	55913700	rs12245299	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	10q21.1	PCDH15	rs12245299-T	2.0E-4	6E-8	(O'Connor Slope)	1.392	[NR] unit increase	Illumina [546355]	N
1011	chr10	55955609	55955610	rs10825269	24797007	Holliday EG	2014-05-01	Am J Gastroenterol	Genome-wide association study identifies two novel genomic regions in irritable bowel syndrome.	Irritable bowel syndrome	Up to 172 European ancestry cases, 1,398 European ancestry controls	Up to 485 European ancestry cases, up to 716 European ancestry controls	10q21.1	PCDH15	rs10825269-T	0.12	5E-6		1.55	[1.28-1.87]	Affymetrix [~ 2500000] (imputed)	N
1012	chr10	56015655	56015656	rs11004183	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	10q21.1	PCDH15	rs11004183-?	NR	7E-10	(IDL_L)	0.028918512	NR unit decrease	Illumina [609262]	N
1012	chr10	56015655	56015656	rs11004183	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	10q21.1	PCDH15	rs11004183-?	NR	7E-10	(IDL_C)	0.033256285	NR unit decrease	Illumina [609262]	N
1012	chr10	56015655	56015656	rs11004183	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	10q21.1	PCDH15	rs11004183-?	NR	4E-10	(IDL_P)	0.03990763	NR unit decrease	Illumina [609262]	N
1012	chr10	56015655	56015656	rs11004183	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	10q21.1	PCDH15	rs11004183-?	NR	1E-10	(IDL_FC)	0.03675439	NR unit decrease	Illumina [609262]	N
1012	chr10	56038451	56038452	rs2043997	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	MBL2	rs2043997-?	NR	2E-6	(phenylalanine)	0.16560501	[0.098-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1012	chr10	56039293	56039294	rs997067	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	10q21.1	PCDH15	rs997067-?	0.37	2E-7		20.51	unit increase	Illumina [120975] (imputed)	N
1012	chr10	56075744	56075745	rs12267883	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.1	NR	rs12267883-G	0.01045	2E-8	(EIF3K)	0.02052	NR unit decrease	Illumina [1671387] (imputed)	N
1013	chr10	56141090	56141091	rs1112065	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	MBL2	rs1112065-?	NR	2E-6	(phenylalanine)	0.1649151	[0.096-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1013	chr10	56204290	56204291	rs7476422	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	10q21.1	PCDH15	rs7476422-G	0.82	3E-7	(Allelic)	2.06	[1.54-2.75]	Illumina [555600]	N
1013	chr10	56217751	56217752	rs1930170	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	10q21.1	PCDH15	rs1930170-?		6E-8	(East Asian)			Affymetrix [702413]	N
1013	chr10	56217751	56217752	rs1930170	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	10q21.1	PCDH15	rs1930170-?		6E-8	(East Asian)			Affymetrix [702413]	N
1013	chr10	56221749	56221750	rs10159656	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	10q21.1	NR	rs10159656-G	0.01444	2E-6		0.5902	[0.34-0.84] unit decrease	Illumina [10677593] (imputed)	N
1013	chr10	56225752	56225753	rs1930169	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	10q21.1	NR	rs1930169-?	NR	3E-8	(Alistipes_putredinis)	2.223873	[1.94-2.51]	Illumina [5293637] (imputed)	N
1014	chr10	56298712	56298713	rs137934061	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.1		rs137934061-A	0.01	1E-10				NR [NR] (imputed)	N
1014	chr10	56298712	56298713	rs137934061	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.1		rs137934061-A	0.01	8E-9		0.61	[0.28-0.94] unit increase	NR [NR] (imputed)	N
1014	chr10	56347293	56347293	rs34508767	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	10q21.1	NR	rs34508767-?	NR	3E-6		0.058436293	[NR] unit increase	Illumina [at least 269494] (imputed)	N
1014	chr10	56355751	56355752	rs11511013	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	10q21.1	RP11-257I14.1	rs11511013-T	0.820682857	1E-6		0.208882	unit decrease	Illumina [6969139] (imputed)	N
1014	chr10	56355751	56355752	rs11511013	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	10q21.1	NR	rs11511013-?		9E-6				Illumina [up to 6969139] (imputed)	N
1015	chr10	56391302	56391303	rs1937395	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q21.1	intergenic	rs1937395-?	NR	1E-6	(FEV1 decline in non-asthmatics)	0.1607	[0.095-0.226] unit increase	Illumina [~ 2500000] (imputed)	N
1015	chr10	56421399	56421400	rs117238693	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	10q21.1	PCDH15	rs117238693-T	0.98	8E-6		0.43	[0.23-0.63] unit increase	Illumina [14638245] (imputed)	N
1016	chr10	56494162	56494163	rs4935555	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.1	NR	rs4935555-?	NR	3E-7				Affymetrix [NR]	N
1016	chr10	56570953	56570954	rs146977851	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	10q21.1	PCDH15	rs146977851-C	0.971	4E-7		0.065	[0.04-0.09] hours increase	Affymetrix [up to 73355677] (imputed)	N
1016	chr10	56592864	56592865	rs10825405	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10q21.1	PCDH15	rs10825405-?	NR	7E-6				Affymetrix, Illumina [15642250] (imputed)	N
1016	chr10	56620607	56620608	rs975809	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	10q21.1	PCDH15	rs975809-?	NR	7E-9	(Age-sex-adjusted)			Illumina [32817]	N
1017	chr10	56639939	56639940	rs973709	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.1		rs973709-G	0.444	1E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1017	chr10	56639939	56639940	rs973709	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q21.1	PCDH15	rs973709-G	0.443367	5E-8		0.0109774	[0.007-0.0149] unit increase	Affymetrix [NR] (imputed)	N
1017	chr10	56649667	56649668	rs11813604	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q21.1	MTRNR2L5	rs11813604-T	0.699	4E-9		0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1017	chr10	56660436	56660437	rs2045147	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q21.1	NR	rs2045147-?		6E-9		0.0126686	[0.0084-0.0169] unit increase	Affymetrix [19400418] (imputed)	N
1017	chr10	56661361	56661362	rs6481128	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Extraversion	122,886 European ancestry individuals	46,621 European ancestry individuals	10q21.1	PCDH15	rs6481128-G	0.45	5E-10		0.018	[0.0082-0.0278] unit increase GPC-2 Discovery cohort	Affymetrix, Illumina [6343667] (imputed)	N
1017	chr10	56694221	56694222	rs1630848	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.1	PCDH15, MTRNR2L5	rs1630848-A	0.5407	4E-8		0.00929779	[0.006-0.0126] unit increase	Affymetrix [11880941] (imputed)	N
1017	chr10	56698173	56698174	rs1733760	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q21.1	NR	rs1733760-C	0.51	7E-9		0.014773388	[0.0098-0.0198] unit increase	NR [~ 10000000] (imputed)	N
1017	chr10	56699337	56699338	rs66617308	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.1	PCDH15, MTRNR2L5	rs66617308-T	0.6713	4E-8		1.0185703		Affymetrix [11880941] (imputed)	N
1017	chr10	56700267	56700268	rs1616289	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q21.1	NR	rs1616289-G	0.51	4E-12		0.00748668	[0.0054-0.0096] unit increase	NR [9732723] (imputed)	N
1017	chr10	56700596	56700597	rs962472	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q21.1	MTRNR2L5	rs962472-T	0.4923	8E-9		0.011598815	[0.0077-0.0155] unit decrease	Affymetrix [11514654] (imputed)	N
1017	chr10	56708229	56708230	rs769476671	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	10q21.1	PCDH15	rs769476671-A	0.0018	2E-6		0.6173	[0.36-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1018	chr10	56777023	56777024	rs10763170	26029870	Ye Z	2015-06-01	Nat Genet	Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma.	Sporadic pituitary adenoma	771 Han Chinese cases, 2,788 Han Chinese controls	2,542 Han Chinese cases, 3,620 Han Chinese controls	10q21.1	PCDH15	rs10763170-A	0.201	7E-10		1.28	[1.18-1.39]	Illumina [720770]	N
1018	chr10	56790968	56790969	rs10740609	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	10q21.1	PCDH15	rs10740609-T	0.07	5E-6		3.41	[1.94-4.87] kg increase	Affymetrix [2073674] (imputed)	N
1018	chr10	56848984	56848985	rs16906916	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	10q21.1	intergenic	rs16906916-?	0.03	8E-7	(CSJC, EA, RF+)	14.0	[NR] unit increase	Illumina [534053]	N
1018	chr10	56849343	56849344	rs11004733	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	10q21.1	NR	rs11004733-C	0.04	1E-6		1.34	1.19-1.50	NR [at least 8482392] (imputed)	N
1018	chr10	56849343	56849344	rs11004733	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	10q21.1	NR	rs11004733-C	0.04	1E-6		1.34	1.19-1.50	NR [at least 8482392] (imputed)	N
1019	chr10	56994602	56994603	rs2680328	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Childhood body mass index	828 Mexican-Mestizo ancestry individuals	NA	10q21.1	PCDH15	rs2680328-G	0.16	6E-8		1.4	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1021	chr10	57177469	57177470	rs10825503	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10q21.1	NR	rs10825503-T	0.4873	1E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1021	chr10	57185508	57185509	rs7917795	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.1		rs7917795-G	0.497	2E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1021	chr10	57185508	57185509	rs7917795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q21.1		rs7917795-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1023	chr10	57414478	57414479	rs2244956	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	10q21.1	NR	rs2244956-C	0.3646	3E-8		0.011841185	[0.0077-0.016] unit increase	Affymetrix [10613246] (imputed)	N
1023	chr10	57416960	57416961	rs1916521	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q21.1	ZWINT	rs1916521-?	NR	5E-7	(recessive)			Affymetrix [361034]	N
1024	chr10	57549295	57549296	rs16907840	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	10q21.1	MTRNR2L5	rs16907840-?	NR	8E-6	(Whole cohort; EA)			Illumina [up to 871502]	N
1024	chr10	57656127	57656128	rs117778141	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	10q21.1	intergenic	rs117778141-T	NR	1E-6	(males)	0.5	[0.3-0.7] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1025	chr10	57710041	57710042	rs1908345	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	10q21.1	NR	rs1908345-A		6E-6				NR [525577]	N
1026	chr10	57832151	57832152	rs10825741	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10q21.1		rs10825741-A	NR	2E-6	(mid-sleep time, weekdays)	0.2525	[0.15-0.36] unit increase	Affymetrix [7141204] (imputed)	N
1026	chr10	57833944	57833945	rs77217161	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs77217161-A	NR	6E-6	(GLM)	2.5732	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1026	chr10	57833944	57833945	rs77217161	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs77217161-?	NR	9E-7	(MLM)	0.6896701	[0.42-0.96] unit increase	Illumina [~ 9000000] (imputed)	N
1026	chr10	57833944	57833945	rs77217161	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	10q21.1		rs77217161-?	NR	7E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1026	chr10	57896223	57896224	rs78395463	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q21.1		rs78395463-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1027	chr10	57934946	57934947	rs77431164	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10q21.1	NR	rs77431164-?	NR	1E-6		1948.3691	NR unit decrease	Illumina [2379855]	N
1027	chr10	58054641	58054642	rs61854820	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs61854820-C	NR	5E-6	(GLM)	2.4396	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1027	chr10	58054641	58054642	rs61854820	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs61854820-?	NR	6E-8	(MLM)	0.724535	[0.46-0.99] unit increase	Illumina [~ 9000000] (imputed)	N
1027	chr10	58054641	58054642	rs61854820	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	10q21.1		rs61854820-?	NR	4E-7	(MLM)			Illumina [~ 9000000] (imputed)	N
1028	chr10	58090607	58090608	rs112656640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.1	NR	rs112656640-T	0.01742	8E-11	(KATNAL2)	0.04494	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr10	58090607	58090608	rs112656640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.1	NR	rs112656640-T	0.01742	4E-10	(HSPA8)	1.195	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr10	58090607	58090608	rs112656640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.1	NR	rs112656640-T	0.01742	4E-10	(FKBP4)	0.03505	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr10	58090607	58090608	rs112656640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.1	NR	rs112656640-T	0.01742	1E-9	(HSPA4)	0.06393	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr10	58117123	58117124	rs11005326	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	10q21.1	ZWINT	rs11005326-G	0.1313	3E-7		4.577	[NR] unit decrease	Illumina [4827900] (imputed)	N
1028	chr10	58193840	58193841	rs61857276	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs61857276-?	NR	1E-7	(MLM)	0.7002314	[0.44-0.96] unit increase	Illumina [~ 9000000] (imputed)	N
1028	chr10	58193840	58193841	rs61857276	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	10q21.1		rs61857276-?	NR	8E-7	(MLM)			Illumina [~ 9000000] (imputed)	N
1029	chr10	58287804	58287805	rs4935651	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	10q21.1	NR	rs4935651-?	NR	7E-6				Illumina [NR] (imputed)	N
1030	chr10	58339240	58339241	rs1907926	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	10q21.1	NR	rs1907926-G	0.110	2E-7		9.793	[NR] unit increase	Illumina [527829]	N
1030	chr10	58339354	58339355	rs143325061	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	10q21.1		rs143325061-A	NR	3E-6	(GLM)	2.7622	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1031	chr10	58478814	58478815	rs11817796	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	10q21.1	NR	rs11817796-?		4E-6		1.74	[1.37-2.19]	Illumina [NR]	N
1031	chr10	58560882	58560883	rs11005536	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	10q21.1	NR	rs11005536-A	0.632	3E-6		0.016707188	[0.0097-0.0237] unit increase	Affymetrix [up to 6544775] (imputed)	N
1032	chr10	58630599	58630600	rs142118483	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	10q21.1	ZWINT	rs142118483-?	NR	8E-8				Illumina [NR] (imputed)	N
1032	chr10	58630599	58630600	rs142118483	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	10q21.1	ZWINT	rs142118483-?	NR	5E-6				Illumina [NR] (imputed)	N
1032	chr10	58630599	58630600	rs142118483	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	10q21.1	ZWINT	rs142118483-?	NR	3E-6		3.0	[1.83-4.90]	Illumina [NR] (imputed)	N
1032	chr10	58658616	58658617	rs10825928	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs10825928-?	NR	3E-9				NR [NR]	N
1032	chr10	58658968	58658969	rs10825929	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs10825929-?	NR	2E-9				NR [NR]	N
1032	chr10	58658968	58658969	rs10825929	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs10825929-?	NR	2E-8				NR [NR]	N
1032	chr10	58663601	58663602	rs2393138	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs2393138-?	NR	2E-9				NR [NR]	N
1032	chr10	58663601	58663602	rs2393138	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs2393138-?	NR	2E-9				NR [NR]	N
1032	chr10	58663601	58663602	rs2393138	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q21.1		rs2393138-?	NR	2E-9				NR [NR]	N
1032	chr10	58668036	58668037	rs191221203	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Succinivibrionaceae abundance in stool	5,959 Finnish ancestry individuals	NA	10q21.1		rs191221203-G	0.01605	3E-8		0.183584	[0.12-0.25] unit increase	Illumina [7980478] (imputed)	N
1032	chr10	58668036	58668037	rs191221203	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Succinivibrio abundance in stool	5,959 Finnish ancestry individuals	NA	10q21.1		rs191221203-G	0.01605	1E-8		0.222807	[0.15-0.3] unit increase	Illumina [7980478] (imputed)	N
1032	chr10	58693541	58693542	rs34747361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	10q21.1		rs34747361-T	0.001180852	3E-8		12.804773	[8.26-17.35] unit increase	Illumina [13429980] (imputed)	N
1033	chr10	58751053	58751054	rs7895261	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	10q21.1	NR	rs7895261-T	0.28996	2E-8		5.59	z score increase	NR [10847151] (imputed)	N
1033	chr10	58751053	58751054	rs7895261	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	10q21.1	NR	rs7895261-T	0.28996	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1033	chr10	58754598	58754599	rs7920086	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	IPMK	rs7920086-?	NR	9E-6	(glycocholate)	0.16810502	[0.094-0.242] unit increase	Affymetrix [at least 2500000] (imputed)	N
1034	chr10	58882639	58882640	rs78139826	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	10q21.1	Intergenic	rs78139826-?	NR	2E-6		8.47	[3.5-20.5]	Illumina [8600000] (imputed)	N
1034	chr10	58933548	58933549	rs7089692	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	10q21.1	ZWINT	rs7089692-G	0.2459	4E-6		0.2431	[0.15-0.34] unit decrease	Illumina [533687]	N
1034	chr10	58974807	58974808	rs11005694	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.1	NR	rs11005694-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1036	chr10	59113707	59113708	rs1011077	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.1	NR	rs1011077-?	NR	3E-6				Affymetrix [NR]	N
1036	chr10	59145816	59145817	rs72803989	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q21.1	intergenic	rs72803989-G	NR	1E-6				Illumina [up to 11995908] (imputed)	N
1036	chr10	59189177	59189178	rs4462262	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	10q21.1	intergenic	rs4462262-C	NR	9E-8				Illumina [~ 550000]	N
1037	chr10	59311902	59311903	rs140265971	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10q21.1	Intergenic	rs140265971-A		7E-6		3.1539	[1.78-4.53] unit increase	Illumina [7576458] (imputed)	N
1037	chr10	59314858	59314859	rs118142035	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q21.1		rs118142035-T	NR	8E-6		3.8792	[2.21-5.55] unit increase	Illumina [NR] (imputed)	N
1037	chr10	59355943	59355944	rs72796654	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10q21.1	Intergenic	rs72796654-A		6E-6		3.157	[1.79-4.53] unit increase	Illumina [7576458] (imputed)	N
1037	chr10	59367395	59367396	rs34674354	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10q21.1	Intergenic	rs34674354-A		7E-6		3.1479	[1.78-4.52] unit decrease	Illumina [7576458] (imputed)	N
1038	chr10	59422426	59422427	rs10128443	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	10q21.1	intergenic	rs10128443-T		8E-6		2.6274	[1.52-3.83] unit increase	Illumina [7576458] (imputed)	N
1039	chr10	59564479	59564480	rs72804706	30277614	Carlson JC	2018-09-11	Genet Epidemiol	Genome-wide interaction studies identify sex-specific risk alleles for nonsyndromic orofacial clefts.	Nonsyndromic cleft lip with or without cleft palate x sex interaction (2df test)	1,293 male cases, 849 female cases, 713 male controls, 987 female controls	NA	10q21.1	IPMK	rs72804706-C	0.102	4E-8				Illumina [up to 34985077] (imputed)	N
1039	chr10	59572707	59572708	rs17625382	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	10q21.1	NR	rs17625382-G	0.84	3E-6		1.41	[1.27-1.55]	Illumina [4058415] (imputed)	N
1039	chr10	59605323	59605324	rs146225887	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	10q21.1		rs146225887-A	0.011024	8E-7		1.676446	NR	Affymetrix [7846216] (imputed)	N
1040	chr10	59724387	59724388	rs7070038	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10q21.1	IPMK	rs7070038-A	0.11	7E-6	(AA)	0.21	[0.11-0.31] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1040	chr10	59724402	59724403	rs7088591	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q21.1	MRPS35P3	rs7088591-A	0.97	9E-7	(PP)	1.44	[0.87-2.01] mm of mercury decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1040	chr10	59751256	59751257	rs16911516	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	10q21.1	intergenic	rs16911516-C	0.086	7E-6		0.337	[0.19-0.48] unit decrease	Illumina [621723]	N
1040	chr10	59758642	59758643	rs11006002	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	10q21.1	IPMK	rs11006002-?		7E-6		0.799	[NR] unit decrease	Illumina [5970354] (imputed)	N
1041	chr10	59776780	59776781	rs1889066	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	10q21.1	IPMK	rs1889066-G	NR	2E-6	(women)	0.333	[0.2-0.47] unit increase	Illumina [5527232] (imputed)	N
1041	chr10	59837320	59837321	rs61851911	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10q21.1	NR	rs61851911-G	NR	1E-6	(GEE model)	0.88856	[0.53-1.24] unit decrease	NR [NR] (imputed)	N
1041	chr10	59849357	59849358	rs77853298	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q21.1		rs77853298-?	NR	7E-6		0.12	[0.067-0.173] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1041	chr10	59874366	59874367	rs4948237	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10q21.1	Intergenic	rs4948237-?	NR	8E-6		2.2862368	[NR]	Affymetrix [492217] (imputed)	N
1042	chr10	59913150	59913151	rs1819658	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q21.1	IPMK, CISD1	rs1819658-?		1E-6				Illumina [9725440] (imputed)	N
1042	chr10	59913150	59913151	rs1819658	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q21.1	IPMK, CISD1	rs1819658-?		6E-7				Illumina [9560910] (imputed)	N
1042	chr10	59913150	59913151	rs1819658	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10q21.1	UBE2D1	rs1819658-C	0.774	9E-17		1.19	[1.13-1.25]	Affymetrix, Illumina [953241] (imputed)	N
1042	chr10	59935840	59935841	rs1698403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.1	NR	rs1698403-T	0.217842	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1042	chr10	59938239	59938239	rs112011926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q21.1		rs112011926-AAACTACCATAGTC	0.207814	2E-12		0.019347386	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1042	chr10	59947230	59947231	rs1199103	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.1	NR	rs1199103-A	0.78	5E-11	(EA)	1.1072454	[1.08-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1042	chr10	59953045	59953046	rs17636964	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.1	NR	rs17636964-?	NR	8E-7				Affymetrix [NR]	N
1042	chr10	59972298	59972299	rs2153283	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.1	NR	rs2153283-?	NR	2E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1042	chr10	59985670	59985671	rs2790232	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	IPMK	rs2790232-A	0.029	8E-6	(Arm span )	0.01	[NR] cm increase	Illumina [899892]	N
1042	chr10	59997925	59997926	rs2790216	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q21.1	CISD1, IPMK	rs2790216-G	0.778	8E-9		1.066	[1.029-1.104]	Affymetrix, Illumina [1230000] (imputed)	N
1042	chr10	60006604	60006605	rs7922032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q21.1		rs7922032-A	NR	7E-10		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1042	chr10	60006604	60006605	rs7922032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q21.1	IPMK	rs7922032-A	0.161302	4E-12		0.022146946	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr10	60071955	60071956	rs2790208	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	10q21.1	NR	rs2790208-?	NR	9E-9	(Clostridium_xylanovorans)	0.723325	[0.49-0.96] unit increase	Illumina [5293637] (imputed)	N
1043	chr10	60082667	60082668	rs16912145	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	10q21.1	UBE2D1	rs16912145-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
1043	chr10	60098430	60098430	rs5785315	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	10q21.1		rs5785315-?	NR	8E-6		1.34	[1.179-1.523]	Affymetrix [7975321] (imputed)	N
1043	chr10	60122065	60122066	rs11006121	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	10q21.1	NR	rs11006121-T	0.3996	2E-12		0.0185438	[0.013-0.024] unit increase	Affymetrix [3505788] (imputed)	N
1043	chr10	60145078	60145079	rs12247015	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	10q21.1	NR	rs12247015-G	0.445288	1E-55		0.0337	[0.03-0.038] unit increase	Affymetrix [23037915] (imputed)	N
1043	chr10	60155119	60155120	rs1049432	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	10q21.1	TFAM	rs1049432-T	0.183	2E-223		0.035	[0.033-0.037] unit increase	NR [57525634] (imputed)	N
1043	chr10	60156165	60156166	rs11006132	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	10q21.1	NR	rs11006132-G	0.2296	4E-24		0.0310153	[0.025-0.037] unit increase	Affymetrix [3505788] (imputed)	N
1044	chr10	60164819	60164820	rs10826182	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	10q21.1	TFAM, BICC1	rs10826182-?		2E-6	(PCB170)	0.15	[0.091-0.209] unit increase	Affymetrix [629686]	N
1044	chr10	60204601	60204602	rs7085387	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q21.1	intergenic	rs7085387-?	0.8	2E-6		1.14	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1044	chr10	60210789	60210790	rs10509091	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	10q21.1	TFAM	rs10509091-T	0.35	6E-6		0.074	[0.043-0.105] unit increase	Affymetrix [1532051] (imputed)	N
1044	chr10	60242640	60242641	rs10826197	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.1	TFAM	rs10826197-?	NR	8E-6	(choline)	0.15145151	[0.085-0.218] unit increase	Affymetrix [at least 2500000] (imputed)	N
1044	chr10	60245683	60245684	rs10763548	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	10q21.1	LOC105378316	rs10763548-?	0.23	3E-6	(women)	0.186	NR unit increase	Illumina [628376]	N
1044	chr10	60264740	60264741	rs2033149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	10q21.1		rs2033149-T	NR	1E-9		0.0389	[0.026-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1044	chr10	60264740	60264741	rs2033149	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	10q21.1	TFAM, BICC1	rs2033149-?	NR	2E-9		0.02188	[0.015-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
1044	chr10	60265164	60265164	rs11453704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q21.1		rs11453704-AC	NR	8E-20		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1044	chr10	60265164	60265164	rs11453704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	10q21.1		rs11453704-AC	0.50041	1E-11		0.0229091	[0.016-0.03] unit decrease	Illumina [13478792] (imputed)	N
1044	chr10	60265403	60265404	rs7084402	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10q21.1	BICC1	rs7084402-A	0.5159	1E-12		0.0051	[0.0037-0.0065] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1044	chr10	60265403	60265404	rs7084402	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	10q21.1	BICC1	rs7084402-G	0.48	2E-13		0.108	[0.079-0.137] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1044	chr10	60265655	60265656	rs12262629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q21.1		rs12262629-A	NR	6E-10		0.0315	[0.022-0.041] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1044	chr10	60265655	60265656	rs12262629	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q21.1	BICC1	rs12262629-A	0.336391	2E-8		0.036086388	[0.024-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
1044	chr10	60271823	60271824	rs7069916	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.1		rs7069916-?	NR	3E-21		0.0202093	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1044	chr10	60272707	60272708	rs112597538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q21.1	BICC1	rs112597538-C	0.457513	1E-15		0.017744154	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1044	chr10	60273154	60273155	rs7079648	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	10q21.1		rs7079648-A	0.47	9E-16				NR [7104359] (imputed)	N
1044	chr10	60274605	60274606	rs7897298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q21.1	NR	rs7897298-C	0.46058	6E-21		0.017332	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1044	chr10	60274927	60274928	rs1427200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q21.1	NR	rs1427200-T	0.461069	2E-21		0.017548	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1044	chr10	60279741	60279742	rs1649031	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	10q21.1	BICC1	rs1649031-A	0.417	2E-6	(EA)	0.018571429	[0.011-0.026] unit decrease	Illumina [1986983] (imputed)	N
1044	chr10	60282569	60282570	rs28855176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	10q21.1		rs28855176-C	0.517044	5E-21		0.03289	[0.026-0.04] unit decrease	Illumina [13475706] (imputed)	N
1044	chr10	60283007	60283008	rs9416703	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	10q21.1	BICC1	rs9416703-A	0.525	2E-18	(Japanese)	0.036	[0.028-0.044] unit decrease	Illumina [5864938] (imputed)	N
1044	chr10	60283007	60283008	rs9416703	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	10q21.1	BICC1	rs9416703-?	NR	4E-17		0.03615	[0.028-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1044	chr10	60283089	60283090	rs7392584	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q21.1	BICC1	rs7392584-T	0.4782	5E-20	(East Asian)	0.0536	[0.042-0.065] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1044	chr10	60283308	60283309	rs7089636	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	10q21.1	BICC1	rs7089636-T	0.54	9E-6				Affymetrix, Illumina [8002429] (imputed)	N
1044	chr10	60283308	60283309	rs7089636	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	10q21.1	BICC1	rs7089636-G	0.46	1E-13		1.0869565	NR	Affymetrix, Illumina [8002429] (imputed)	N
1044	chr10	60283308	60283309	rs7089636	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	10q21.1	BICC1	rs7089636-G	0.46	7E-7		1.0869565	NR	Affymetrix [at least 8002429] (imputed)	N
1044	chr10	60283523	60283524	rs7392557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q21.1		rs7392557-A	NR	2E-17		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1044	chr10	60284762	60284763	rs150505258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	10q21.1		rs150505258-A	0.501548	7E-9		0.0182951	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
1044	chr10	60284762	60284763	rs150505258	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q21.1	BICC1	rs150505258-?		5E-6		0.01	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1044	chr10	60284762	60284763	rs150505258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	10q21.1	BICC1	rs150505258-?	NR	4E-8		0.02805	[0.018-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1044	chr10	60286339	60286341	rs56139163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q21.1		rs56139163-T	0.497362366	2E-11		0.05547222	[0.039-0.072] unit decrease	Illumina [13134967] (imputed)	N
1044	chr10	60288539	60288540	rs1649016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q21.1		rs1649016-A	NR	1E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1044	chr10	60291910	60291911	rs1658471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.1		rs1658471-?	NR	9E-21				NR [~ 8900000] (imputed)	N
1044	chr10	60292401	60292402	rs1658469	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	BICC1	rs1658469-A	0.454596	5E-25		0.0191574	[0.016-0.023] unit increase	NR [13737936] (imputed)	N
1044	chr10	60292443	60292444	rs1649081	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	10q21.1	BICC1	rs1649081-A	0.49	3E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
1044	chr10	60292443	60292444	rs1649081	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	10q21.1	BICC1	rs1649081-A	0.48	3E-7	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1045	chr10	60293319	60293320	rs1649078	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q21.1	BICC1	rs1649078-A	0.5128	3E-39		0.0449	[0.038-0.052] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1045	chr10	60293319	60293320	rs1649078	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q21.1	BICC1	rs1649078-A	0.4796	4E-19		0.03863	[0.03-0.047] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1045	chr10	60293319	60293320	rs1649078	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q21.1	NR	rs1649078-A	0.4975	7E-10	(women)	0.0313	[0.021-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1045	chr10	60293319	60293320	rs1649078	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q21.1	NR	rs1649078-A	0.4874	1E-18	(men)	0.0489	[0.038-0.06] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1045	chr10	60304863	60304864	rs1649068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q21.1		rs1649068-C	NR	8E-40		0.0233	[0.02-0.027] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1045	chr10	60304863	60304864	rs1649068	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q21.1	BICC1	rs1649068-A	0.4747	4E-21		9.439	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1045	chr10	60306547	60306548	rs67362351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q21.1		rs67362351-A	NR	2E-15		0.0467	[0.035-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1045	chr10	60306547	60306548	rs67362351	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q21.1	NR	rs67362351-C		3E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
1045	chr10	60314554	60314555	rs34123447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q21.1		rs34123447-A	NR	1E-20		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1045	chr10	60318896	60318897	rs1658442	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		10q21.1	NR	rs1658442-A		3E-6		0.055	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1045	chr10	60321486	60321487	rs1649053	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	10q21.1	BICC1	rs1649053-T		9E-9		0.029	[0.019-0.039] mg/dl decrease	NR [NR] (imputed)	N
1045	chr10	60323020	60323021	rs1658441	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q21.1	NR	rs1658441-C	0.4809	7E-11		0.0909	[0.064-0.118] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1045	chr10	60326909	60326910	rs1658436	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	10q21.1	BICC1	rs1658436-A	NR	1E-16		0.0589	unit decrease	Illumina [15409056] (imputed)	N
1045	chr10	60327526	60327527	rs1658435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	10q21.1		rs1658435-G	0.474242	2E-9		0.0187073	[0.013-0.025] unit decrease	Illumina [13478961] (imputed)	N
1045	chr10	60329165	60329166	rs2917949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q21.1		rs2917949-A	NR	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1045	chr10	60329165	60329166	rs2917949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q21.1		rs2917949-A	NR	5E-19		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1045	chr10	60329165	60329166	rs2917949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q21.1	BICC1	rs2917949-A	0.532311	2E-17		0.01898144	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1045	chr10	60329165	60329166	rs2917949	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q21.1	NR	rs2917949-A	0.517	8E-9	(EA)	0.0861	[0.057-0.115] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1045	chr10	60329185	60329186	rs2577391	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q21.1		rs2577391-T	0.5	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr10	60329229	60329230	rs2842083	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q21.1	TFAM, BICC1	rs2842083-?		2E-44				Affymetrix, Illumina [NR] (imputed)	N
1045	chr10	60331546	60331547	rs1658425	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q21.1	BICC1	rs1658425-G	0.459761	2E-30		0.00574051	[0.0047-0.0068] unit increase	Affymetrix [13995440] (imputed)	N
1045	chr10	60334001	60334002	rs1982173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.1	NR	rs1982173-T	0.42196	3E-22				Affymetrix, Illumina [24653286] (imputed)	N
1045	chr10	60334001	60334002	rs1982173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.1	NR	rs1982173-T	0.422045	2E-22				Affymetrix, Illumina [24558453] (imputed)	N
1045	chr10	60338752	60338753	rs4141671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.1		rs4141671-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1045	chr10	60338752	60338753	rs4141671	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	10q21.1	BICC1	rs4141671-T	NR	9E-9		1.098901	[1.05-1.14]	Affymetrix [up to 40000000] (imputed)	N
1045	chr10	60338752	60338753	rs4141671	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q21.1	NR	rs4141671-T	0.5241	3E-13		0.0515	[0.038-0.065] unit increase	Illumina [~ 10600000] (imputed)	N
1045	chr10	60339097	60339098	rs4948523	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	10q21.1	BICC1	rs4948523-?	NR	3E-14		1.0570824	[1.04-1.07]	Illumina [13762925] (imputed)	N
1045	chr10	60343029	60343030	rs2393449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q21.1		rs2393449-G	NR	9E-18		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1045	chr10	60358028	60358029	rs10763562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q21.1		rs10763562-T	NR	8E-9		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1045	chr10	60365754	60365755	rs4245599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	10q21.1		rs4245599-G	NR	5E-11		0.0721	[0.051-0.094] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1045	chr10	60366298	60366299	rs11006204	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q21.1	NR	rs11006204-?	NR	2E-6		0.109581	[0.064-0.155] unit increase	NR [13958389] (imputed)	N
1045	chr10	60372594	60372595	rs10740735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.1	NR	rs10740735-C	NR	4E-11		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1045	chr10	60374897	60374898	rs2393455	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	10q21.1	BICC1	rs2393455-A	NR	2E-9		0.908646	[0.88-0.94]	Illumina [NR] (imputed)	N
1045	chr10	60374897	60374898	rs2393455	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	10q21.1	BICC1	rs2393455-A	NR	5E-9		0.913383	[0.88-0.94]	Illumina [NR] (imputed)	N
1045	chr10	60374897	60374898	rs2393455	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	10q21.1	BICC1	rs2393455-C	NR	7E-9		1.08	1.05-1.11	Affymetrix [at least 665500] (imputed)	N
1045	chr10	60374897	60374898	rs2393455	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.1	BICC1	rs2393455-C		5E-9		0.153	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1046	chr10	60460024	60460025	rs11006228	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q21.1	NR	rs11006228-A	0.1983	6E-8		0.0134	[0.0085-0.0183] unit increase	NR [~ 27400000] (imputed)	N
1046	chr10	60462095	60462096	rs4948540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.1	BICC1	rs4948540-C	NR	1E-8		0.020317	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1046	chr10	60462095	60462096	rs4948540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.1	BICC1	rs4948540-C	NR	5E-9		0.0208091	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1046	chr10	60510597	60510598	rs2393481	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10q21.1	BICC1	rs2393481-G	0.3713	1E-6				Illumina [4404269] (imputed)	N
1046	chr10	60519447	60519448	rs11006253	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.1	NR	rs11006253-A	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1047	chr10	60555577	60555578	rs11006263	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.1	BICC1	rs11006263-G	0.03	7E-6	(Height )	0.03	[NR] cm increase	Illumina [899892]	N
1047	chr10	60560333	60560334	rs2393502	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q21.1	NR	rs2393502-?	NR	2E-7		2.33	[1.87-2.9]	Illumina [539000] (imputed)	N
1047	chr10	60567936	60567937	rs9416744	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	10q21.1		rs9416744-A	0.2561	1E-12		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1047	chr10	60567936	60567937	rs9416744	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	10q21.1	BICC1	rs9416744-A	0.2595	7E-17		1.0351		Affymetrix [11880941] (imputed)	N
1047	chr10	60567936	60567937	rs9416744	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.1	BICC1	rs9416744-A	0.2595	7E-17		1.0349985		Affymetrix [11880941] (imputed)	N
1047	chr10	60568696	60568697	rs2893787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	10q21.1		rs2893787-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1047	chr10	60571434	60571435	rs4948317	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q21.1	NR	rs4948317-C	0.27	2E-7		1.0869565	[1.05-1.12]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1047	chr10	60571434	60571435	rs4948317	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	10q21.1	NR	rs4948317-C	0.27	7E-8	(East Asian)	1.1	[1.06-1.13]	Affymetrix, Illumina [2400000] (imputed)	N
1047	chr10	60577395	60577396	rs62625030	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.1	BICC1	rs62625030-A	0.98926	6E-9		0.0519163	[0.034-0.069] unit decrease	NR [13737936] (imputed)	N
1047	chr10	60586505	60586506	rs7901135	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	10q21.1	NR	rs7901135-?	NR	9E-6				Illumina [7427422] (imputed)	N
1047	chr10	60586991	60586992	rs72804453	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		10q21.1	BICC1	rs72804453-?	NR	8E-11	(AA)	0.078	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1047	chr10	60586991	60586992	rs72804453	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		10q21.1	BICC1	rs72804453-?	NR	4E-7	(AA)	0.111	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1047	chr10	60588552	60588553	rs4948550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q21.1		rs4948550-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1047	chr10	60615094	60615095	rs11006280	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	10q21.1	NR	rs11006280-T	0.7466	5E-6		0.0261	[0.015-0.037] unit increase	Illumina [up to 1980188] (imputed)	N
1047	chr10	60668570	60668571	rs61458523	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.1	NR	rs61458523-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1048	chr10	60700999	60701000	rs72806511	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10q21.1	BICC1, FAM133CP, PHYHIPL	rs72806511-T	NR	3E-6	(resting duration, weekdays)	0.508	[0.29-0.72] unit decrease	Affymetrix [7141204] (imputed)	N
1048	chr10	60743010	60743011	rs182102769	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q21.1	NR	rs182102769-?	NR	2E-8				Illumina [7760689] (imputed)	N
1049	chr10	60860963	60860964	rs74757908	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q21.1		rs74757908-?	NR	7E-6		0.28	[0.16-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1049	chr10	60930295	60930296	rs12415920	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q21.1	NR	rs12415920-?	NR	3E-8				Illumina [7760689] (imputed)	N
1050	chr10	61073613	61073614	rs11812286	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	10q21.1	intergenic	rs11812286-?	NR	3E-6	(Recessive model)	2.27	unit decrease	Illumina [542562]	N
1051	chr10	61146581	61146582	rs11006464	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		10q21.1	FAM13C1	rs11006464-T	NR	5E-6		0.3832	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1051	chr10	61177972	61177973	rs551170370	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q21.2	NR	rs551170370-?	NR	3E-7		0.0087676	[0.0054-0.0121] unit increase	Affymetrix [805426] (imputed)	N
1051	chr10	61204464	61204465	rs10763607	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.2	NR	rs10763607-?	NR	8E-8				Affymetrix [NR]	N
1052	chr10	61264475	61264476	rs116041093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total lipids in very large HDL meal response (LMM)	11,410 individuals	NA	10q21.2		rs116041093-A	0.0260619	2E-10		0.135743	[0.11-0.17] unit decrease	Illumina [7568622] (imputed)	N
1052	chr10	61264475	61264476	rs116041093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total cholesterol in very large HDL meal response (LMM)	11,410 individuals	NA	10q21.2		rs116041093-A	0.0260619	1E-8		0.181105	[0.14-0.23] unit decrease	Illumina [7568622] (imputed)	N
1052	chr10	61264475	61264476	rs116041093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in very large HDL meal response (LMM)	11,410 individuals	NA	10q21.2		rs116041093-A	0.0260619	1E-9		0.164198	[0.13-0.2] unit decrease	Illumina [7568622] (imputed)	N
1052	chr10	61264689	61264690	rs147684079	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Cholesterol esters in very large HDL meal response (LMM)	11,410 individuals	NA	10q21.2		rs147684079-T	0.0231715	6E-9		0.197414	[0.15-0.25] unit decrease	Illumina [7568622] (imputed)	N
1052	chr10	61270643	61270644	rs11006544	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	10q21.2	NR	rs11006544-?	NR	2E-7	(AA)	15.980066	[9.99-21.97] unit decrease	Affymetrix [at least 600000] (imputed)	N
1052	chr10	61270643	61270644	rs11006544	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	10q21.2	NR	rs11006544-?	NR	2E-7		16.175	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1052	chr10	61329236	61329237	rs4424624	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	10q21.2	RP11-135D11.2	rs4424624-C		7E-6		5.72	[NR] unit decrease	Illumina [up to 5481607] (imputed)	N
1052	chr10	61339892	61339893	rs61860854	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q21.2	Intergenic	rs61860854-T	NR	3E-11	(between families)	6.651	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1053	chr10	61346181	61346182	rs16913790	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	CCDC6	rs16913790-?	NR	7E-6	(carnitine)	0.2156484	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1053	chr10	61380481	61380482	rs10826334	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q21.2	SLC16A9	rs10826334-G	0.92	4E-8	(Oz alcohol/week)	0.864	[0.54-1.19] unit decrease	Affymetrix [2500000] (imputed)	N
1053	chr10	61380481	61380482	rs10826334	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q21.2	SLC16A9	rs10826334-G	0.91	1E-8	(drinks/week)	0.238	[0.14-0.34] unit decrease	Affymetrix [2500000] (imputed)	N
1053	chr10	61380481	61380482	rs10826334	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	10q21.2	SLC16A9	rs10826334-G	0.92	9E-7	(Oz alcohol/week)	0.529	[0.31-0.75] unit decrease	Affymetrix [2500000] (imputed)	N
1053	chr10	61385773	61385774	rs4948236	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	10q21.2	RP11-135D11.2	rs4948236-T	0.21	6E-6		0.06	[0.04-0.08] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1053	chr10	61403130	61403131	rs11510917	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10q21.2	NR	rs11510917-A	0.833229	5E-12		0.0183953	[0.013-0.024] unit increase	Affymetrix [16583148] (imputed)	N
1053	chr10	61409468	61409469	rs10826337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q21.2		rs10826337-A	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1053	chr10	61409468	61409469	rs10826337	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q21.2	SLC16A9	rs10826337-G	0.592595	6E-9		0.0113214	[0.0075-0.0151] unit increase	Affymetrix [NR] (imputed)	N
1053	chr10	61412334	61412335	rs3763747	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	10q21.2		rs3763747-?	NR	2E-6				Illumina [1365315]	N
1053	chr10	61413352	61413353	rs12356193	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs12356193-A	0.84	8E-20	(X-11381)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61413352	61413353	rs12356193	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs12356193-A	0.84	4E-63	(carnitine)	0.027	[0.023-0.031] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61413352	61413353	rs12356193	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs12356193-A	0.84	2E-33	(propionylcarnitine)	0.033	[0.027-0.039] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61413352	61413353	rs12356193	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	10q21.2	SLC16A9	rs12356193-A	0.83	1E-8		0.08	[0.051-0.105] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
1053	chr10	61434518	61434519	rs1171606	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	10q21.2	SLC16A9	rs1171606-A	0.2768	6E-30	(Carnitine)	0.0497	[0.041-0.058] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1053	chr10	61437339	61437340	rs1171602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q21.2	SLC16A9	rs1171602-G	0.584102	7E-16		0.01849398	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr10	61441588	61441597	rs201788267	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	10q21.2		rs201788267-GATGTAT	0.341106	1E-8		0.0254356	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1053	chr10	61444363	61444364	rs1171659	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171659-A	0.758	3E-17	(EA)	0.03642857	[0.028-0.045] unit decrease	Illumina [1986983] (imputed)	N
1053	chr10	61449511	61449512	rs1171652	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.2	NR	rs1171652-C	NR	2E-27		0.03	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1053	chr10	61449563	61449564	rs7094971	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q21.2	SLC16A9	rs7094971-?	NR	1E-14	(carnitine)	0.02185	[NR] unit decrease	Affymetrix [655658]	N
1053	chr10	61449563	61449564	rs7094971	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10q21.2	SLC16A9	rs7094971-G	0.147	3E-14	(carnitine)	0.049	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1053	chr10	61450120	61450121	rs35209863	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.2	NR	rs35209863-C	NR	1E-68		0.0586	[0.052-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1053	chr10	61450120	61450121	rs35209863	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.2	NR	rs35209863-C	NR	1E-11		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1053	chr10	61456637	61456638	rs1171633	32811377	Dueker ND	2020-08-19	Stroke	Extreme Phenotype Approach Suggests Taste Transduction Pathway for Carotid Plaque in a Multi-Ethnic Cohort.	Total carotid plaque area (excess vs minimal atherosclerosis)	180 Hispanic individuals, 100 Black individuals, 60 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171633-G	0.22	7E-6		3.18	[1.91-5.29]	Affymetrix [NR] (imputed)	N
1053	chr10	61460553	61460554	rs61863104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.2	NR	rs61863104-A	NR	9E-19		0.0394	[0.031-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1053	chr10	61465837	61465838	rs1171619	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	10q21.2	SLC16A9	rs1171619-A	0.22	7E-20		0.81	[0.76-0.84]	Affymetrix [710030]	N
1053	chr10	61467181	61467182	rs1171617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q21.2		rs1171617-T	NR	2E-11		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q21.2	SLC16A9	rs1171617-G	0.175751	2E-12	(propionylcarnitine (C3))	0.212	[0.15-0.27] unit decrease	Illumina [13039987] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171617-G	0.232409	2E-11		0.0157619	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q21.2	NR	rs1171617-T	0.767459	9E-31		0.0171923	[0.014-0.02] unit increase	Affymetrix [16578495] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q21.2	NR	rs1171617-T	0.7670859999999999	6E-57		0.0522618	[0.046-0.059] unit increase	Affymetrix [16580851] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	10q21.2	NR	rs1171617-T	0.766787	4E-23		0.029502	[0.024-0.035] unit increase	Affymetrix [16585745] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q21.2	SLC16A9	rs1171617-T	0.7701	2E-77		0.081	[0.072-0.09] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171617-T	0.7682	2E-66		0.079207	[0.07-0.088] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q21.2	NR	rs1171617-T	0.7713	2E-36	(men)	0.0966	[0.082-0.112] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q21.2	NR	rs1171617-T	0.7655	3E-23	(women)	0.0643	[0.052-0.077] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	10q21.2	SLC16A9	rs1171617-?	NR	2E-16	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171617-T	0.78	2E-14	(butyrylcarnitine)	0.036	[0.026-0.046] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61467181	61467182	rs1171617	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	CCDC6	rs1171617-?	NR	6E-26	(carnitine)	0.41752112	[0.34-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1053	chr10	61468588	61468589	rs1171616	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q21.2	SLC16A9	rs1171616-T	0.767	1E-10	(AA)	0.1005	[0.07-0.131] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1053	chr10	61468588	61468589	rs1171616	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	10q21.2	SLC16A9	rs1171616-T	NR	3E-15	(Carnitine (free))	0.377038	[0.28-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1053	chr10	61468588	61468589	rs1171616	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	10q21.2	SLC16A9	rs1171616-T	0.7835	6E-10	(Propionylcarnitine)	0.0979	[0.067-0.129] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q21.2	SLC16A9	rs1171615-C	0.174799	5E-11	(acetylcarnitine (C2))	0.202	[0.14-0.26] unit decrease	Illumina [13039987] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q21.2	SLC16A9	rs1171615-C	0.174799	3E-48	(carnitine)	0.448	[0.39-0.51] unit decrease	Illumina [13039987] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q21.2	SLC16A9	rs1171615-T	0.769072	1E-9		0.015945863	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	10q21.2	SLC16A9	rs1171615-T	0.78	2E-95	(carnitine/X-12798)	0.077	[0.069-0.085] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171615-T	0.78	4E-11	(hexanoylcarnitine)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61469089	61469090	rs1171615	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171615-T	0.78	3E-34	(X-12798)	0.048	[0.04-0.056] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q21.2		rs1171614-C	NR	2E-120		0.0563	[0.052-0.061] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q21.2		rs1171614-C	NR	1E-26		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q21.2	NR	rs1171614-T	0.23	1E-141		0.0557	[0.051-0.06] unit decrease	NR [NR]	N
1053	chr10	61469537	61469538	rs1171614	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171614-T	0.2309	1E-13		0.0167	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q21.2	NR	rs1171614-C	0.770138	1E-10		0.014175	[0.0099-0.0185] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs1171614-?	NR	3E-40				NR [~ 8900000] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	10q21.2	SLC16A9	rs1171614-C	NR	3E-12	(Valine/Propionylcarnitine)	0.328612	[0.24-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	10q21.2	SLC16A9	rs1171614-T	0.2037	2E-81	(Carnitine)	0.1031	[0.093-0.114] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	10q21.2	SLC16A9	rs1171614-T	0.203	2E-15	(Acetylcarnitine)	0.0689	[0.052-0.086] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	10q21.2	intergenic	rs1171614-?	NR	5E-14	(Carnitine)			Illumina [~ 2500000] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171614-T	0.22	7E-14	(X-11261)	0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q21.2	SLC16A9	rs1171614-T	0.22	3E-23	(acetylcarnitine)	0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1053	chr10	61469537	61469538	rs1171614	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	10q21.2	SLC16A9	rs1171614-T	0.22	2E-28		0.079	[0.065-0.093] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1054	chr10	61482054	61482055	rs1171607	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	10q21.2	SLC16A9	rs1171607-T	0.0351	5E-6		1.3456	[0.77-1.93] unit increase	Illumina [9520174] (imputed)	N
1054	chr10	61491042	61491043	rs11816402	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	10q21.2		rs11816402-T	0.082	3E-6		0.217113	[0.13-0.31] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
1054	chr10	61494036	61494037	rs1171582	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	10q21.2	SLC16A9, CCDC6, C10orf40	rs1171582-C	NR	6E-6		1.1675422		Illumina [1233578] (imputed)	N
1054	chr10	61507662	61507663	rs55981851	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.2	NR	rs55981851-T	NR	4E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr10	61510340	61510341	rs10993993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q21.2	NR	rs10993993-C	NR	9E-14		0.0475	[0.035-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr10	61530397	61530398	rs187296392	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q21.2	NR	rs187296392-?	NR	3E-6	(Native Hawaiian)	1.1487	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1054	chr10	61580966	61580967	rs920964	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	SLC16A9	rs920964-?	NR	6E-7	(carnitine)	0.51892984	[0.32-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr10	61624696	61624697	rs1177701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.2		rs1177701-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		6E-7	(EA)	0.299	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		4E-7		0.277	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		2E-7		0.199	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		3E-6	(EA)	0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		1E-6		0.177	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61638803	61638804	rs2440907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	CCDC6	rs2440907-G		4E-8		0.14	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1055	chr10	61645589	61645590	rs1184089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q21.2	CCDC6	rs1184089-G	0.672581	3E-15		0.018700844	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr10	61645589	61645590	rs1184089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q21.2	NR	rs1184089-G	0.673005	1E-11		0.013538	[0.0096-0.0175] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1055	chr10	61647152	61647153	rs1171819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q21.2	CCDC6	rs1171819-C	0.327991	8E-13		0.016940475	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr10	61664194	61664195	rs77329626	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q21.2	NR	rs77329626-?	NR	8E-6	(AA)	1.4476	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1055	chr10	61667816	61667817	rs1171832	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10q21.2	ANK3	rs1171832-C	0.5136	3E-9		0.01155309	[0.0077-0.0154] unit increase	Illumina [9339358] (imputed)	N
1055	chr10	61668338	61668339	rs3763745	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.2	CCDC6	rs3763745-A	0.74987	2E-12		0.0148951	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1055	chr10	61687416	61687417	rs1684913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	10q21.2		rs1684913-T	NR	5E-12		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1055	chr10	61687416	61687417	rs1684913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q21.2	NR	rs1684913-T	NR	1E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr10	61688545	61688546	rs10994073	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q21.2	NR	rs10994073-?		5E-6				Illumina [4322238] (imputed)	N
1055	chr10	61690194	61690195	rs75768999	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q21.2	NR	rs75768999-?	NR	2E-9	(Japanese)	0.6094	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1055	chr10	61710539	61710540	rs1185704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q21.2		rs1185704-G	NR	7E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1055	chr10	61721536	61721537	rs2450454	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	ANK3	rs2450454-?	NR	1E-6	(carnitine)	0.45938626	[0.27-0.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
1056	chr10	61738151	61738152	rs7902657	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	10q21.2		rs7902657-?	NR	4E-8				Illumina [NR] (imputed)	N
1056	chr10	61755296	61755297	rs7084953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs7084953-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1056	chr10	61790082	61790083	rs137898089	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	10q21.2	ANK3	rs137898089-A	0.2135	4E-6		1.545	[1.284-1.859]	Affymetrix, Illumina [14074516] (imputed)	N
1056	chr10	61794145	61794146	rs11597421	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.2	ANK3	rs11597421-G	0.5026999999999999	2E-8		1.0240855		Affymetrix [11880941] (imputed)	N
1056	chr10	61794925	61794926	rs55915659	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	10q21.2	NR	rs55915659-G	NR	8E-6		0.221	[0.12-0.32] SD units increase	NR [10700000] (imputed)	N
1056	chr10	61803061	61803062	rs1002442	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	10q21.2	ANK3	rs1002442-?		3E-7				Illumina [859311]	N
1056	chr10	61842644	61842645	rs7070670	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.2	NR	rs7070670-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1056	chr10	61842644	61842645	rs7070670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.2		rs7070670-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1056	chr10	61842644	61842645	rs7070670	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q21.2	NA	rs7070670-T	0.3228	4E-10		0.0132	[0.0091-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
1056	chr10	61842644	61842645	rs7070670	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q21.2	NA	rs7070670-T	0.3228	7E-10		0.0126	[0.0085-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
1057	chr10	61885361	61885362	rs4146140	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	10q21.2	ANK3	rs4146140-T	0.3811	7E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
1057	chr10	61885891	61885892	rs12761450	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	10q21.2	ANK3	rs12761450-T	0.415	1E-6		0.07	[0.031-0.109] unit decrease	Illumina [2316178] (imputed)	N
1057	chr10	61926865	61926866	rs10509125	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Behavioral disturbance or psychiatric symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	10q21.2	ANK3	rs10509125-?	0.402	1E-6		2.09	[1.55-2.82]	Illumina [518938]	N
1057	chr10	61945012	61945013	rs3793861	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	10q21.2	ANK3	rs3793861-?	NR	3E-6	(EA)	3.67	[2.13-6.32]	NR [341191]	N
1058	chr10	62009218	62009219	rs10994278	31553412	Legge SE	2019-09-25	JAMA Psychiatry	Association of Genetic Liability to Psychotic Experiences With Neuropsychotic Disorders and Traits.	Psychotic experience	6,123 European ancestry cases, 121,379 European ancestry controls	NA	10q21.2	ANK3	rs10994278-T	NR	3E-8		1.16	[1.10-1.23]	Affymetrix [> 7500000] (imputed)	N
1058	chr10	62020727	62020728	rs16914670	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10q21.2	NA	rs16914670-G		3E-11		0.0185967	[0.013-0.024] unit decrease	Illumina [13288253] (imputed)	N
1058	chr10	62052543	62052544	rs10740020	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q21.2		rs10740020-C	0.39	1E-19		9.09	z score increase	Affymetrix [9061022] (imputed)	N
1058	chr10	62054617	62054618	rs117899405	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs117899405-A	0.0122	2E-8	(PIR)	0.005972	NR unit increase	Illumina [1671387] (imputed)	N
1058	chr10	62074719	62074720	rs78254522	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	10q21.2	NR	rs78254522-T	NR	5E-7		0.569	NR	Illumina [at least 560000] (imputed)	N
1058	chr10	62076627	62076628	rs10994299	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	10q21.2	ANK3	rs10994299-?	NR	1E-9		1.23		Affymetrix, Illumina [8837380] (imputed)	N
1058	chr10	62078299	62078300	rs1340653	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q21.2	NR	rs1340653-T	0.3954	3E-11				NR [9056863] (imputed)	N
1058	chr10	62078299	62078300	rs1340653	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q21.2	ANK3	rs1340653-?		4E-8				NR [7428630] (imputed)	N
1058	chr10	62082736	62082737	rs10821723	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 131)	19,670 European ancestry individuals	NA	10q21.2		rs10821723-?	NR	3E-8				NR [9705931] (imputed)	N
1058	chr10	62085336	62085337	rs10761482	20185149	Athanasiu L	2010-02-23	J Psychiatr Res	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	10q21.2	ANK3	rs10761482-?	NR	8E-6		1.16	[NR]	Affymetrix [572888]	N
1058	chr10	62117556	62117557	rs61846511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs61846511-A	0.03484	2E-8	(AOC3)	0.01152	NR unit increase	Illumina [1671387] (imputed)	N
1058	chr10	62123437	62123438	rs61846516	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	10q21.2	NR	rs61846516-C	0.938	3E-9		0.86675	[0.82-0.91]	Affymetrix, Illumina [7549318] (imputed)	N
1058	chr10	62125855	62125856	rs10994318	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	10q21.2	ANK3	rs10994318-C	NR	1E-8		1.134	[1.086-1.184]	Illumina [3742365] (imputed)	N
1058	chr10	62125855	62125856	rs10994318	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	10q21.2	ANK3	rs10994318-C	0.0574	7E-9		1.14488	[1.1-1.19]	NR [9372253] (imputed)	N
1058	chr10	62125855	62125856	rs10994318	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	10q21.2	ANK3	rs10994318-C	0.0574	2E-8		1.19339		NR [9372253] (imputed)	N
1059	chr10	62140839	62140840	rs10821746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs10821746-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1059	chr10	62150847	62150848	rs3808942	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q21.2	NR	rs3808942-T		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1059	chr10	62160832	62160833	rs10761494	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q21.2		rs10761494-A	0.37	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
1059	chr10	62160832	62160833	rs10761494	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.2	ANK3	rs10761494-A	0.3617	3E-14		0.015	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1059	chr10	62163728	62163729	rs1599166	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q21.2	ANK3	rs1599166-?		3E-18				Affymetrix, Illumina [NR] (imputed)	N
1059	chr10	62163970	62163970	rs35064620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q21.2		rs35064620-AG	0.798238	1E-9		0.0153182	[0.01-0.02] unit increase	Illumina [13479295] (imputed)	N
1059	chr10	62167927	62167928	rs12776510	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q21.2	ANK3	rs12776510-?	NR	4E-11		0.023558892	[0.017-0.031] unit increase	Illumina [27896057] (imputed)	N
1059	chr10	62179811	62179812	rs10994336	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	10q21.2	ANK3	rs109944336-?	NR	9E-9				Affymetrix [1769948] (imputed)	N
1059	chr10	62179811	62179812	rs10994336	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	10q21.2	ANK3	rs10994336-T	0.05	9E-9		1.45	[NR]	Affymetrix [1769948] (imputed)	N
1059	chr10	62181127	62181128	rs10994338	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	10q21.2	ANK3	rs10994338-?	NR	5E-7				Affymetrix, Perlegen [1472580] (imputed)	N
1059	chr10	62185493	62185494	rs4948418	22182935	Chen DT	2011-12-20	Mol Psychiatry	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese ancestry cases, 1,000 Taiwanese ancestry controls	1,115 European ancestry cases, 2,728 European ancestry controls	10q21.2	ANK3	rs4948418-T	NR	4E-10				Affymetrix, Illumina [748555]	N
1059	chr10	62222106	62222107	rs10994359	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q21.2	ANK3	rs10994359-C	NR	3E-9	(5 degree of freedom test)	1.081	[1.03-1.13]	NR [1252901] (imputed)	N
1060	chr10	62276316	62276317	rs10761514	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q21.2	ANK3	rs10761514-?	NR	6E-8	(Gaussian-weighted model)			Illumina [501584]	N
1060	chr10	62279123	62279124	rs10994397	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q21.2	ANK3	rs10994397-?	0.065	7E-9				NR [1252901] (imputed)	N
1060	chr10	62279123	62279124	rs10994397	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	10q21.2	ANK3	rs10994397-T	NR	3E-7		1.22	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1060	chr10	62283204	62283205	rs181120640	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	10q21.2	NR	rs181120640-?	NR	2E-6		1.7874	[1.2-2.38] unit decrease	Illumina [at least 560000] (imputed)	N
1060	chr10	62298122	62298123	rs16915102	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.2	NR	rs16915102-?	NR	2E-32				Affymetrix [NR]	N
1060	chr10	62300382	62300383	rs1938526	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	10q21.2	intergenic	rs1938526-?	NR	1E-8				Affymetrix [1769948] (imputed)	N
1060	chr10	62320329	62320330	rs2068043	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q21.2	ANK3	rs2068043-?	NR	3E-7	(Gaussian-weighted model)			Illumina [501584]	N
1060	chr10	62322033	62322034	rs10994415	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	10q21.2	ANK3	rs10994415-T	0.918	1E-11		0.88861	[0.85-0.92]	Affymetrix, Illumina [7549318] (imputed)	N
1060	chr10	62322033	62322034	rs10994415	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA	10q21.2	ANK3	rs10994415-C	NR	7E-11		1.27	[NR]	Illumina [2267487] (imputed)	N
1060	chr10	62343370	62343371	rs7924180	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q21.2	ANK3	rs7924180-?		2E-6				Illumina [4322238] (imputed)	N
1060	chr10	62346637	62346638	rs16915157	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	10q21.2	intergenic	rs16915157-?	NR	7E-7		1.13	[NR]	Affymetrix [745006]	N
1060	chr10	62346637	62346638	rs16915157	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q21.2	NR	rs16915157-?	NR	5E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [1252901] (imputed)	N
1061	chr10	62390645	62390646	rs10821808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q21.2		rs10821808-A	NR	4E-8		0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1061	chr10	62390645	62390646	rs10821808	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q21.2	NR	rs10821808-A	0.5809	3E-9		0.2919	[0.2-0.39] unit decrease	Illumina [6200000] (imputed)	N
1061	chr10	62390725	62390726	rs10761530	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10q21.2	ANK3	rs10761530-T	0.4981	1E-11		0.117	[0.083-0.151] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1061	chr10	62396372	62396373	rs7069191	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q21.2	NR	rs7069191-T	0.178	3E-7		0.240696	[0.15-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
1061	chr10	62410141	62410146	rs202228845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q21.2		rs202228845-A	NR	7E-9		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1061	chr10	62410141	62410146	rs202228845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	10q21.2	NR	rs202228845-A	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1061	chr10	62414681	62414682	rs10740039	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q21.2	ANK3	rs10740039-?	NR	3E-6		0.155	[0.077-0.233] unit increase	Illumina [at least 13000000] (imputed)	N
1061	chr10	62493949	62493950	rs1904398	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.2	ANK3	rs1904398-A	0.495193	2E-16		0.0152091	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1061	chr10	62493949	62493950	rs1904398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.2		rs1904398-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1061	chr10	62493949	62493950	rs1904398	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.2		rs1904398-?	NR	7E-16		0.0170171	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1061	chr10	62501736	62501737	rs11815438	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q21.2	LOC105378320, CDK1	rs11815438-?	NR	7E-8				Illumina [501584]	N
1061	chr10	62519028	62519029	rs1904406	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	RHOBTB1	rs1904406-?	NR	5E-6	(PC 36:1)	0.15413879	[0.088-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1062	chr10	62548389	62548390	rs3213056	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	10q21.2	CDC2	rs3213056-A	0.03	3E-6		0.376	[0.22-0.53] unit decrease	Illumina [~ 2400000] (imputed)	N
1062	chr10	62551889	62551890	rs2456778	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q21.2	CDK1	rs2456778-?	NR	5E-6	(Cocaine-induced paranoia, AA)			Illumina [37426733] (imputed)	N
1062	chr10	62551889	62551890	rs2456778	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q21.2	CDK1	rs2456778-?	NR	3E-6	(Cocaine-induced paranoia)			Illumina [37426733] (imputed)	N
1063	chr10	62656075	62656076	rs79078979	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RHOBTB1	rs79078979-?	NR	8E-10	(female)	1.52332	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1063	chr10	62659220	62659221	rs542842990	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	10q21.2	RHOBTB1	rs542842990-T	0.0012	7E-6		1.1506	[0.65-1.65] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1063	chr10	62660938	62660939	rs10821852	33967749	Ooi BNS	2021-04-22	Front Pharmacol	Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia.	Atorvastatin-induced myalgia	14 Chinese ancestry cases, 74 Chinese ancestry controls, 12 Indian ancestry cases, 45 Indian ancestry controls, 4 Malay ancestry cases, 34 Malay ancestry controls	NA			rs10821852-?	NR	4E-6		5.658	[2.704-11.84]	Illumina [4554532]	N
1063	chr10	62738742	62738743	rs77972797	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		10q21.2	RHOBTB1	rs77972797-?	NR	8E-7	(AA)	0.111	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1063	chr10	62760741	62760742	rs10994607	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Food allergy	671 European ancestry child cases, 144 European ancestry non-allergic non-sensitized child controls, 234 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	10q21.2	RHOBTB1	rs10994607-?	NR	7E-6				Illumina [6459842] (imputed)	N
1063	chr10	62780126	62780127	rs10994613	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Milk allergy	291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	10q21.2	RHOBTB1, TMEM26	rs10994613-?	NR	5E-6				Illumina [6459842] (imputed)	N
1064	chr10	62796236	62796237	rs140142800	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (erythrocyte sedimentation rate)	487 European ancestry individuals treated with adalimumab, 549 European ancestry individuals treated with etanercept, 414 European ancestry individuals treated with infliximab, 64 European ancestry individuals treated with other TNF inhibitors	NA	10q21.2	LINC00845, TMEM26	rs140142800-?		6E-8	(adalimumab)	0.79	[0.5-1.08] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1064	chr10	62829777	62829778	rs74155456	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	10q21.2	intergenic	rs74155456-?	NR	1E-6		1.087	[0.54-1.63] unit decrease	Illumina [at least 13000000] (imputed)	N
1064	chr10	62829777	62829778	rs74155456	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q21.2	intergenic	rs74155456-?	NR	2E-6		0.201	[0.095-0.307] unit decrease	Illumina [at least 13000000] (imputed)	N
1064	chr10	62839675	62839676	rs138419933	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs138419933-A	0.01045	7E-23	(IGHM)	0.4397	NR unit increase	Illumina [1671387] (imputed)	N
1064	chr10	62907225	62907226	rs7911302	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to epirubicin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10q21.2		rs7911302-?	NR	1E-7				Illumina [1510701]	N
1064	chr10	62909318	62909319	rs1125411	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to epirubicin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	10q21.2		rs1125411-?	NR	9E-8				Illumina [1510701]	N
1065	chr10	62915785	62915786	rs1906458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q21.2		rs1906458-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1065	chr10	62915785	62915786	rs1906458	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q21.2	NR	rs1906458-A	0.43908	1E-24		0.0318019	[0.026-0.038] unit decrease	NR [19129689] (imputed)	N
1065	chr10	62938417	62938418	rs1906457	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q21.2	NR	rs1906457-G	NR	2E-8		0.0351677	NR unit increase	NR [NR] (imputed)	N
1066	chr10	63050958	63050959	rs10994707	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q21.2	TMEM26	rs10994707-?	NR	1E-9		0.020189252	[0.014-0.027] unit increase	NR [7306098]	N
1066	chr10	63053787	63053788	rs3125326	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q21.2	TMEM26	rs3125326-A	0.39151	3E-8		0.00789262	[0.0051-0.0107] unit decrease	Affymetrix [12370749]	N
1066	chr10	63053787	63053788	rs3125326	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q21.2	NR	rs3125326-A	0.390871	2E-9		0.0131543	[0.0088-0.0175] unit decrease	NR [NR]	N
1066	chr10	63053787	63053788	rs3125326	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.2	NR	rs3125326-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1066	chr10	63053787	63053788	rs3125326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.2		rs3125326-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1066	chr10	63102773	63102774	rs2204015	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.2	TMEM26	rs2204015-C	0.205106	9E-10		0.0139572	[0.0095-0.0184] unit increase	NR [13737936] (imputed)	N
1066	chr10	63102773	63102774	rs2204015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.2		rs2204015-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1066	chr10	63136164	63136165	rs118067556	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q21.2	NR	rs118067556-C	NR	1E-13		0.035	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1066	chr10	63136621	63136622	rs4948275	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10q21.2	TMEM26	rs4948275-T	NR	4E-6	(sleep duration, weekdays)	0.2073	[0.12-0.29] unit increase	Affymetrix [7141204] (imputed)	N
1066	chr10	63146222	63146223	rs193005771	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	HIgh-sensitivity cardiac troponin T levels (high vs low)	967 Japanese ancestry high hs-cTnT individuals, 2,816 Japanese ancestry low hs-cTnT individuals	190 Japanese ancestry high hs-cTnT individuals, 708 Japanese ancestry low hs-cTnT individuals	10q21.2	TMEM26	rs193005771-A	0.013	2E-6		0.187	[0.11-0.26] unit increase	Illumina [7151284] (imputed)	N
1066	chr10	63146546	63146547	rs16916041	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	10q21.2	TMEM26	rs16916041-T	0.0973	2E-6		1.9778		Illumina [7559010] (imputed)	N
1066	chr10	63162938	63162939	rs118149273	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q21.2	LINC00845, TMEM26	rs118149273-C	0.6898	7E-9		0.09	[0.06-0.12] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1066	chr10	63166772	63166773	rs10994754	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q21.2	TMEM26	rs10994754-G	0.6901	5E-9		0.091	[0.061-0.121] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1067	chr10	63185661	63185662	rs114154155	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10q21.2	intergenic	rs114154155-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1067	chr10	63192413	63192414	rs7088627	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	10q21.2	intergenic	rs7088627-A	0.653	7E-6		0.106	[0.061-0.151] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1067	chr10	63194575	63194576	rs74813029	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q21.2	TMEM26	rs74813029-A	0.17	3E-10		0.54	[0.36-0.72] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1067	chr10	63227520	63227521	rs2393843	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q21.2	TMEM26	rs2393843-A	0.1771	2E-10		0.5569	[0.39-0.73] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1067	chr10	63233987	63233988	rs10994777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q21.2		rs10994777-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1067	chr10	63239802	63239803	rs2650705	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q21.2	TMEM26, AS1	rs2650705-A	0.162054	4E-9		0.0166065	[0.011-0.022] unit increase	NR [16516521] (imputed)	N
1067	chr10	63244984	63244985	rs3104841	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q21.2	TMEM26	rs3104841-G	0.452048882129677	7E-7		0.002673	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1067	chr10	63307474	63307475	rs2787702	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q21.2	TMEM26	rs2787702-?	NR	9E-6				Affymetrix, Illumina [~ 1300000]	N
1068	chr10	63348766	63348767	rs1350172	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q21.2	C10orf107	rs1350172-?	NR	4E-7				Affymetrix, Illumina [~ 1300000]	N
1068	chr10	63361986	63361987	rs2814021	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.2	C10orf107	rs2814021-G	0.204	7E-6	(Fat free mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
1068	chr10	63373891	63373892	rs10994830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs10994830-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1068	chr10	63422997	63422998	rs71507180	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q21.2	Intergenic	rs71507180-C	0.943	4E-8		0.0231	[0.015-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1068	chr10	63433489	63433490	rs60457246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q21.2		rs60457246-A	NR	1E-17		0.0951	[0.073-0.117] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1069	chr10	63444216	63444217	rs72821787	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	10q21.2	C10orf107	rs72821787-A	0.156182	9E-18		0.095073596	[0.073-0.117] unit decrease	Affymetrix [7288503] (imputed)	N
1069	chr10	63444427	63444428	rs72821788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	10q21.2		rs72821788-A	NR	5E-12		0.0755	[0.054-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1069	chr10	63450772	63450773	rs61850473	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q21.2	NR	rs61850473-A	0.9485	5E-6		0.03103027	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1069	chr10	63462364	63462365	rs7922049	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q21.2	C10orf107	rs7922049-A	0.14	9E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63462364	63462365	rs7922049	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q21.2	C10orf107	rs7922049-A	0.14	2E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63466753	63466754	rs2393831	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	10q21.2	CABCOCO1	rs2393831-A	0.777106	4E-10	(EA)	0.00928993	[0.0064-0.0122] unit increase	Affymetrix [~ 8800000] (imputed)	N
1069	chr10	63467552	63467553	rs4590817	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q21.2	C10orf107	rs4590817-?	NR	1E-18				Affymetrix, Illumina [18800000] (imputed)	N
1069	chr10	63467552	63467553	rs4590817	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q21.2	C10orf107	rs4590817-?		5E-25				Affymetrix, Illumina [18800000] (imputed)	N
1069	chr10	63467552	63467553	rs4590817	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q21.2	C10orf107	rs4590817-C	0.159	1E-12	(EA, initial)	0.696	[0.5-0.89] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1069	chr10	63467552	63467553	rs4590817	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q21.2	C10orf107	rs4590817-C	0.159	4E-13	(EA, initial)	0.436	[0.32-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1069	chr10	63467552	63467553	rs4590817	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q21.2	C10orf107	rs4590817-G	0.83	2E-18	(Mean Arterial Pressure)	0.576	[0.45-0.71] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1069	chr10	63476100	63476101	rs72823804	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q21.2	C10orf107	rs72823804-A	0.86	1E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63484208	63484209	rs76781995	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10q21.2	C10orf107	rs76781995-T	0.91	4E-16	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63499950	63499951	rs57946343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q21.2		rs57946343-C	NR	2E-20		0.0291	[0.023-0.035] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1069	chr10	63499950	63499951	rs57946343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q21.2		rs57946343-C	NR	7E-24		0.0334	[0.027-0.04] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1069	chr10	63511305	63511306	rs57541197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q21.2		rs57541197-A	NR	2E-29		0.0963	[0.079-0.113] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1069	chr10	63511305	63511306	rs57541197	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q21.2	C10orf107	rs57541197-A	0.144319	2E-29		0.096298166	[0.08-0.113] unit decrease	Affymetrix [7288503] (imputed)	N
1069	chr10	63515680	63515681	rs72831343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q21.2		rs72831343-G	NR	1E-23		0.0324	[0.026-0.039] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1069	chr10	63515680	63515681	rs72831343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.2		rs72831343-?	NR	5E-50				NR [~ 8900000] (imputed)	N
1069	chr10	63515680	63515681	rs72831343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q21.2		rs72831343-?	NR	1E-47				NR [~ 8900000] (imputed)	N
1069	chr10	63518377	63518378	rs72831344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	10q21.2		rs72831344-T	NR	4E-16		0.0907	[0.069-0.112] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1069	chr10	63518377	63518378	rs72831344	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10q21.2	C10orf107	rs72831344-T	0.145464	4E-16		0.09067399	[0.069-0.113] unit decrease	Affymetrix [7288503] (imputed)	N
1069	chr10	63518377	63518378	rs72831344	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q21.2	C10orf107	rs72831344-T	0.1307	1E-11		0.3366	[0.24-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
1069	chr10	63518619	63518620	rs2675647	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Cholangiocarcinoma in primary sclerosing cholangitis (time to event)	188 European ancestry cholangiocarcinoma cases, 3,147 European ancestry cholangiocarcinoma-free cases	NA	10q21.2	C10orf107, ARID5B, MIR548AV	rs2675647-C	NR	3E-6				Illumina [130422]	N
1069	chr10	63518747	63518748	rs72831345	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10q21.2	C10orf107	rs72831345-A	0.14	9E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63518747	63518748	rs72831345	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q21.2	C10orf107	rs72831345-A	0.14	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63518747	63518748	rs72831345	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q21.2	C10orf107	rs72831345-A	0.14	9E-35	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1069	chr10	63524590	63524591	rs1530440	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10q21.2	CABCOCO1	rs1530440-?	NR	3E-12		0.05447183	NR unit increase	Affymetrix [464137]	N
1069	chr10	63524590	63524591	rs1530440	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q21.2	c10orf107	rs1530440-?	NR	3E-12				Affymetrix, Illumina [18800000] (imputed)	N
1069	chr10	63524590	63524591	rs1530440	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q21.2	c10orf107	rs1530440-?		2E-16				Affymetrix, Illumina [18800000] (imputed)	N
1069	chr10	63524590	63524591	rs1530440	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	C10orf107	rs1530440-C		7E-11		0.316	unit increase	Affymetrix [at least 2696785] (imputed)	N
1069	chr10	63524590	63524591	rs1530440	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	C10orf107	rs1530440-C		1E-18		0.261	unit increase	Affymetrix [at least 2696785] (imputed)	N
1069	chr10	63524590	63524591	rs1530440	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q21.2	C10orf107	rs1530440-T	0.167183536958903	3E-9		0.36199185	[0.24-0.48] unit decrease	Illumina [247039]	N
1069	chr10	63524590	63524591	rs1530440	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q21.2	c10orf107	rs1530440-T	0.1855	5E-7		0.0238	unit decrease	Illumina [242296]	N
1069	chr10	63524590	63524591	rs1530440	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	10q21.2	c10orf107, RHOBTB1, ARID5B, TMEM26, RTKN2	rs1530440-T	0.19	1E-9		0.39	[0.27-0.51] mm Hg decrease	Affymetrix, Illumina [2497993] (imputed)	N
1069	chr10	63525111	63525112	rs17210692	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	10q21.2	C10orf107	rs17210692-A	0.188106	4E-11		0.069548264	[0.049-0.09] unit decrease	Affymetrix [7288503] (imputed)	N
1069	chr10	63529375	63529376	rs2675613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q21.2		rs2675613-T	0.41	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
1069	chr10	63529375	63529376	rs2675613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q21.2		rs2675613-T	0.41	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1069	chr10	63529375	63529376	rs2675613	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q21.2	NR	rs2675613-T	0.4198	7E-11				NR [9056863] (imputed)	N
1069	chr10	63532044	63532045	rs2675617	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q21.2	NR	rs2675617-G	0.4194	6E-12				NR [9056863] (imputed)	N
1069	chr10	63533662	63533663	rs7076398	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q21.2	C10orf107	rs7076398-A	0.188	2E-13		0.563	[0.41-0.71] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1069	chr10	63533662	63533663	rs7076398	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q21.2	C10orf107	rs7076398-A	0.188	3E-18		0.409	[0.32-0.5] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1069	chr10	63544183	63544184	rs10994920	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q21.2	NR	rs10994920-C	0.147117	4E-9		0.058567528	[0.039-0.078] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1069	chr10	63546995	63546996	rs2588973	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q21.2		rs2588973-T	0.43	3E-12		6.98	z score increase	Affymetrix [9061022] (imputed)	N
1069	chr10	63551772	63551773	rs7070797	28108127	Eitel I	2017-01-15	Int J Cardiol	Genome-wide association study in takotsubo syndrome - Preliminary results and future directions.	Takotsubo syndrome	96 European ancestry cases, 475 controls	NA	10q21.2	NR	rs7070797-A	0.11	2E-6		2.74	NR	NR [at least 498281] (imputed)	N
1069	chr10	63559608	63559609	rs2588978	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	10q21.2	ARID5B	rs2588978-T	0.4804	5E-11		0.014819743	[0.01-0.019] unit decrease	Affymetrix [11514463] (imputed)	N
1069	chr10	63559608	63559609	rs2588978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q21.2		rs2588978-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1069	chr10	63560053	63560054	rs759830397	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q21.2	NR	rs759830397-?		3E-9		0.0129593	[0.0087-0.0172] unit increase	Affymetrix [19400418] (imputed)	N
1069	chr10	63565351	63565352	rs150081574	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q21.2	Intergenic	rs150081574-A	0.984	5E-7	(AA)	0.13	NR unit decrease	Illumina [NR] (imputed)	N
1070	chr10	63572333	63572334	rs7086061	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.2		rs7086061-G	0.615	4E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1070	chr10	63576285	63576286	rs2675638	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q21.2		rs2675638-G	0.581	1E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1070	chr10	63579213	63579214	rs1470375	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q21.2	RP11-491H19.1	rs1470375-G	0.4776	2E-8		0.011393826	[0.0074-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1070	chr10	63579820	63579821	rs75486977	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	10q21.2		rs75486977-T	0.015	5E-6		4.9		Illumina [5409651] (imputed)	N
1070	chr10	63584208	63584209	rs10994935	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q21.2		rs10994935-T	NR	4E-6		1.6154	[0.94-2.29] unit increase	Illumina [NR] (imputed)	N
1070	chr10	63591412	63591413	rs10994943	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q21.2	ARID5B	rs10994943-T	0.581	1E-11		0.014953904	[0.011-0.019] unit increase	Affymetrix [11514654] (imputed)	N
1070	chr10	63598956	63598957	rs2588959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.2		rs2588959-T	0.5019	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1070	chr10	63598956	63598957	rs2588959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.2	Intergenic	rs2588959-T	0.5019	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1070	chr10	63626493	63626494	rs190509410	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q21.2	Intergenic	rs190509410-A	1.0	2E-6	(AA)	2.674	NR unit increase	Illumina [NR] (imputed)	N
1070	chr10	63626938	63626939	rs2588926	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		10q21.2	intergenic	rs2588926-C	0.044	8E-6		0.892	[0.51-1.28] unit decrease	Illumina [640625] (imputed)	N
1070	chr10	63636530	63636531	rs2675609	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	10q21.2	ARID5B	rs2675609-T	0.43	2E-6	(Japanese)	0.036	[0.022-0.050] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1070	chr10	63644245	63644246	rs2675611	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q21.2	NR	rs2675611-T	0.468736	3E-8		0.00718597	[0.0047-0.0097] unit increase	Affymetrix [16578495] (imputed)	N
1070	chr10	63645958	63645959	rs1530439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q21.2	NR	rs1530439-T	0.30893099999999996	8E-24		0.00932499	[0.0075-0.0111] unit increase	Affymetrix [16582909] (imputed)	N
1070	chr10	63645958	63645959	rs1530439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q21.2	NR	rs1530439-T	0.308785	1E-18		0.0114918	[0.0089-0.0141] unit increase	Affymetrix [16585854] (imputed)	N
1070	chr10	63645958	63645959	rs1530439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q21.2	NR	rs1530439-T	0.30893099999999996	5E-23		0.0101172	[0.0081-0.0121] unit increase	Affymetrix [16582965] (imputed)	N
1070	chr10	63645958	63645959	rs1530439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q21.2	NR	rs1530439-T	0.308785	8E-16		0.0123076	[0.0093-0.0153] unit increase	Affymetrix [16585866] (imputed)	N
1070	chr10	63657705	63657706	rs77044968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs77044968-C	NR	7E-10		0.0376717	[0.026-0.05] unit increase	Affymetrix [321788] (imputed)	N
1070	chr10	63657705	63657706	rs77044968	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q21.2	ARID5B	rs77044968-?	NR	3E-10		0.0344	[0.025-0.044] unit decrease	Affymetrix [5701386] (imputed)	N
1070	chr10	63657705	63657706	rs77044968	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q21.2	NR	rs77044968-C	0.060911999999999966	2E-9		0.0371362	[0.025-0.05] unit increase	Affymetrix [16577313] (imputed)	N
1070	chr10	63670684	63670685	rs72833340	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.2		rs72833340-A	0.646	7E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1070	chr10	63670813	63670814	rs7075591	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	10q21.2		rs7075591-?	NR	2E-8				NR [7857346] (imputed)	N
1070	chr10	63670813	63670814	rs7075591	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q21.2	ARID5B	rs7075591-?	NR	1E-8		0.0098564	[0.0065-0.0133] unit increase	Affymetrix [805426] (imputed)	N
1070	chr10	63674406	63674407	rs2393780	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q21.2	NR	rs2393780-A	0.483	2E-26		0.0115298	[0.0094-0.0137] unit decrease	NR [9732723] (imputed)	N
1070	chr10	63674406	63674407	rs2393780	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q21.2	NR	rs2393780-A	0.478	3E-13		0.0106723	[0.0078-0.0135] unit increase	NR [9732723] (imputed)	N
1070	chr10	63674884	63674885	rs7921378	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10q21.2	ARID5B	rs7921378-C	0.481	6E-11		0.0149	[0.01-0.019] unit decrease	Illumina [~ 250000] (imputed)	N
1070	chr10	63674884	63674885	rs7921378	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q21.2	ARID5B	rs7921378-C	0.4809	3E-18		0.017524462	[0.014-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1070	chr10	63674884	63674885	rs7921378	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q21.2	NR	rs7921378-C	0.482	6E-20		0.023313547	[0.018-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1070	chr10	63675842	63675843	rs7083526	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	10q21.2	ARID5B	rs7083526-C		9E-13		0.975	[NR]	Affymetrix [up to 79000000] (imputed)	N
1070	chr10	63695047	63695048	rs6479779	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.2	NR	rs6479779-C	0.345369661175423	2E-6	(IGP5)	0.1909	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1070	chr10	63695047	63695048	rs6479779	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.2	NR	rs6479779-C	0.345248463284379	1E-6	(IGP45)	0.1943	[0.12-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1070	chr10	63695701	63695702	rs79498125	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Disease-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor effect)	2,799 European ancestry donors	NA	10q21.2		rs79498125-G	0.06	3E-8		1.8574415	[1.49280962693263-2.3111378984977]	Illumina [8515276] (imputed)	N
1071	chr10	63701535	63701536	rs112779912	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARID5B	rs112779912-?	NR	4E-11	(male)	1.59403	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1071	chr10	63702571	63702572	rs55767272	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q21.2	ARID5B	rs55767272-A	0.934925	6E-12		0.0278189	[0.02-0.036] unit increase	Affymetrix [NR] (imputed)	N
1071	chr10	63712602	63712602	rs141583966	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q21.2	ARID5B	rs141583966-G	0.909	8E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [11800000] (imputed)	N
1071	chr10	63717112	63717113	rs146716733	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q21.2	NR	rs146716733-C	0.9213	1E-8		0.0451	[0.03-0.061] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q21.2		rs4948492-T	NR	1E-22		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q21.2		rs4948492-T	0.645167	7E-9		0.0122245	[0.0081-0.0164] unit decrease	Illumina [13479295] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	10q21.2		rs4948492-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q21.2	ARID5B	rs4948492-T	0.660416	5E-24		0.023650778	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.2	NR	rs4948492-T	0.657674	4E-28				Affymetrix, Illumina [23472807] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q21.2	NR	rs4948492-T	0.661671	6E-28		0.021918	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1071	chr10	63719738	63719739	rs4948492	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q21.2	ARID5B	rs4948492-?	NR	8E-11		0.019397616	[0.014-0.025] unit decrease	Illumina [27896057] (imputed)	N
1071	chr10	63721175	63721176	rs7090445	33891562	Hao Q	2021-04-23	Aging (Albany NY)	Age-related differences of genetic susceptibility to patients with acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	381 Chinese ancestry cases, 1,466 Chinese ancestry controls	NR	10q21.2	ARID5B	rs7090445-?	NR	3E-14		1.96	[1.60-2.24]	NR [9466286] (imputed)	N
1071	chr10	63721175	63721176	rs7090445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q21.2	ARID5B	rs7090445-T	0.660394	1E-12		0.01657958	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1071	chr10	63721175	63721176	rs7090445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q21.2	ARID5B	rs7090445-T	0.660388	2E-22		0.02278713	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr10	63721175	63721176	rs7090445	23996088	Migliorini G	2013-08-30	Blood	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	10q21.2	ARID5B	rs7090445-?	NR	5E-54				Illumina [382776] (imputed)	N
1071	chr10	63722894	63722895	rs4245595	25310577	Evans TJ	2014-10-13	PLoS One	Confirmation of childhood acute lymphoblastic leukemia variants, ARID5B and IKZF1, and interaction with parental environmental exposures.	Acute lymphoblastic leukemia (childhood)	358 European ancestry cases, 1,192 European ancestry controls	441 European ancestry cases, 1,542 European ancestry controls	10q21.2	ARID5B	rs4245595-C	0.34	2E-9		1.63	[1.38-1.93]	Illumina [7162141] (imputed)	N
1071	chr10	63723576	63723577	rs10821936	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	10q21.2	ARID5B	rs10821936-C	0.33	1E-106		1.8	[1.71-1.89]	Affymetrix, Illumina [~ 6118121] (imputed)	N
1071	chr10	63723576	63723577	rs10821936	28817678	Archer NP	2017-08-17	PLoS One	Family-based exome-wide association study of childhood acute lymphoblastic leukemia among Hispanics confirms role of ARID5B in susceptibility.	Acute lymphoblastic leukemia (childhood)	203 Hispanic cases and 96 Native American cases from 323 families	NA	10q21.2	ARID5B	rs10821936-C	0.73	2E-8		2.31	[1.70- 3.14]	Illumina [up to 237436]	N
1071	chr10	63723576	63723577	rs10821936	23512250	Xu H	2013-03-19	J Natl Cancer Inst	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	10q21.2	ARID5B	rs10821936-C	0.33	6E-46		1.86	[1.71-2.03]	Affymetrix [709059]	N
1071	chr10	63723576	63723577	rs10821936	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	10q21.2	ARID5B	rs10821936-C	0.31	4E-15		1.46	[1.33 - 1.60]	Affymetrix [355750]	N
1071	chr10	63723576	63723577	rs10821936	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	10q21.2	ARID5B	rs10821936-C	0.31	1E-11	(ETV6-RUNX1 positive)	1.42	[1.29 - 1.58]	Affymetrix [355750]	N
1071	chr10	63723576	63723577	rs10821936	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	10q21.2	ARID5B	rs10821936-C	0.34	1E-15		1.91	[1.60-2.20]	Affymetrix [307944]	N
1071	chr10	63725941	63725942	rs4245597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q21.2		rs4245597-A	NR	1E-17		0.0115	[0.009-0.014] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1071	chr10	63725941	63725942	rs4245597	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q21.2		rs4245597-G	0.344	7E-13				Affymetrix [10369434] (imputed)	N
1071	chr10	63732314	63732315	rs75872811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q21.2		rs75872811-G	NR	1E-12		0.0727	[0.053-0.093] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1071	chr10	63745688	63745689	rs7087507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs7087507-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1071	chr10	63752158	63752159	rs7089424	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	10q21.2	ARID5B	rs7089424-?	NR	2E-73		1.8867927	[0.50-0.57]	Illumina [6755715] (imputed)	N
1071	chr10	63752158	63752159	rs7089424	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	10q21.2	ARID5B	rs7089424-T	NR	2E-62		1.64	[NR]	Affymetrix [757935]	N
1071	chr10	63752158	63752159	rs7089424	19684604	Papaemmanuil E	2009-08-16	Nat Genet	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	10q21.2	ARID5B	rs7089424-C	0.34	7E-19		1.65	[1.54-1.76]	Illumina [291473]	N
1071	chr10	63779870	63779871	rs71508903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	10q21.2		rs71508903-T	NR	3E-8		0.0872	[0.056-0.118] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	10q21.2		rs71508903-T	NR	5E-37		0.139	[0.12-0.16] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	10q21.2		rs71508903-T	NR	9E-14		0.0934	[0.069-0.118] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10q21.2		rs71508903-T	NR	3E-25		1.16	[1.13-1.19]	NR [13810676] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	10q21.2	ARID5B	rs71508903-?		2E-12		1.24	[1.17-1.32]	Illumina [NR] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	10q21.2	ARID5B	rs71508903-T	0.192	2E-31		1.14	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10q21.2	ARID5B	rs71508903-T	0.190444	2E-32		0.13927338	[0.12-0.16] unit increase	Affymetrix [7288503] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10q21.2		rs71508903-?	NR	5E-33				NR [~ 8900000] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	10q21.2		rs71508903-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q21.2	ARID5B	rs71508903-T	NR	3E-20		0.154172	[0.12-0.19] unit increase	Illumina [8380626] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q21.2	ARID5B	rs71508903-T	0.24	4E-9	(East Asian)	0.17897	[0.12-0.24] unit increase	Illumina [8380626] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q21.2	ARID5B	rs71508903-T	0.21	4E-13	(EA)	0.14368	[0.1-0.18] unit increase	Illumina [8380626] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	10q21.2	ARID5B	rs71508903-T	0.1997	7E-9		1.183	[1.12-1.25]	Illumina [8966411] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	ARID5B	rs71508903-T	0.24	1E-8	(East Asian)	1.18	[1.12-1.25]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	ARID5B	rs71508903-T	0.22	5E-22		1.16	[1.13-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1071	chr10	63779870	63779871	rs71508903	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	ARID5B	rs71508903-T	0.21	3E-15	(EA)	1.15	[1.11-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1071	chr10	63781823	63781824	rs67527161	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.2	ARID5B	rs67527161-T	0.791	6E-15		0.0182	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q21.2		rs10821944-T	NR	9E-12		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	10q21.2		rs10821944-T	0.634536502	6E-9		0.12228469	[0.081-0.163] unit decrease	Illumina [13429970] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	10q21.2		rs10821944-T	0.634698442	1E-9		0.17443983	[0.12-0.23] unit decrease	Illumina [13429311] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	10q21.2		rs10821944-T	NR	1E-11		0.1566	[0.11-0.2] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q21.2	ARID5B	rs10821944-T	0.7045	1E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10q21.2	ARID5B	rs10821944-T	0.6893	1E-8		0.0042	[0.0028-0.0056] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1071	chr10	63785088	63785089	rs10821944	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	10q21.2	ARID5B	rs10821944-G	0.36	6E-18		1.16	[1.12-1.20]	Affymetrix, Illumina [1948139]	N
1071	chr10	63787845	63787846	rs2393735	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q21.2	NR	rs2393735-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1071	chr10	63800003	63800004	rs12764378	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q21.2	NR	rs12764378-A	0.216723	2E-8		0.0455176	[0.029-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
1071	chr10	63800003	63800004	rs12764378	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	10q21.2	ARID5B	rs12764378-A	0.23	2E-14		1.15	[1.11-1.20]	Illumina [133816] (imputed)	N
1071	chr10	63800003	63800004	rs12764378	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	10q21.2	ARID5B	rs12764378-A	0.23	4E-10		1.1292	(Immunochip only)	Illumina [129464] (imputed)	N
1071	chr10	63800003	63800004	rs12764378	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	10q21.2	ARID5B	rs12764378-A	0.23	1E-8				Illumina [129464] (imputed)	N
1071	chr10	63801029	63801030	rs7902146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs7902146-C	NR	1E-8		0.0184411	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63801029	63801030	rs7902146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs7902146-C	NR	2E-8		0.0182634	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63801029	63801030	rs7902146	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q21.2	ARID5B	rs7902146-T	0.691	3E-12		0.9	[0.87-0.93]	Illumina [11270530] (imputed)	N
1071	chr10	63802573	63802574	rs10821946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10821946-C	NR	2E-11		0.0189993	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1071	chr10	63805375	63805376	rs12355313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q21.2		rs12355313-G	NR	9E-12		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1071	chr10	63805616	63805617	rs4948496	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	10q21.2	ARID5B	rs4948496-?	0.469	1E-6	(EA)	1.15	[NR]	NR [6344733] (imputed)	N
1071	chr10	63805616	63805617	rs4948496	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	10q21.2	ARID5B	rs4948496-C		1E-10		1.14	[1.10-1.19]	Illumina [644674]	N
1071	chr10	63805616	63805617	rs4948496	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q21.2	ARID5B, RTKN2	rs4948496-C	0.63	5E-11		1.1765		Illumina [2100739] (imputed)	N
1071	chr10	63808474	63808475	rs7919055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs7919055-C	NR	2E-11		0.0530466	[0.038-0.069] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63808474	63808475	rs7919055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs7919055-C	NR	1E-11		0.0537038	[0.038-0.069] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63808474	63808475	rs7919055	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q21.2	NR	rs7919055-C	0.04	5E-11		0.032	[0.023-0.041] unit increase	Affymetrix [2446094] (imputed)	N
1071	chr10	63808474	63808475	rs7919055	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q21.2	NR	rs7919055-C	0.04	5E-8				Affymetrix [2446094] (imputed)	N
1071	chr10	63808959	63808960	rs3740357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	10q21.2		rs3740357-C	NR	2E-12		0.1799	[0.13-0.23] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1071	chr10	63809526	63809527	rs10740059	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q21.2	ARID5B	rs10740059-G	0.588472	3E-10		0.0119094	[0.0082-0.0156] unit decrease	NR [13737936] (imputed)	N
1071	chr10	63809526	63809527	rs10740059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.2		rs10740059-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1071	chr10	63809526	63809527	rs10740059	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q21.2		rs10740059-?	NR	2E-10		0.0130738	[0.0089-0.0172] unit decrease	Affymetrix [20259828] (imputed)	N
1071	chr10	63810451	63810452	rs713240	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	10q21.2		rs713240-?	NR	5E-9		0.0201	NR unit decrease	NR [4428082] (imputed)	N
1071	chr10	63810828	63810829	rs118127014	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs118127014-T	0.01045	7E-9	(LCP1)	0.7435	NR unit increase	Illumina [1671387] (imputed)	N
1071	chr10	63810828	63810829	rs118127014	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs118127014-T	0.01045	6E-9	(COTL1)	0.1203	NR unit increase	Illumina [1671387] (imputed)	N
1071	chr10	63810828	63810829	rs118127014	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.2	NR	rs118127014-T	0.01045	4E-9	(PYCARD)	0.02248	NR unit increase	Illumina [1671387] (imputed)	N
1071	chr10	63811966	63811967	rs10821950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.2		rs10821950-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1071	chr10	63813743	63813744	rs16916931	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q21.2		rs16916931-A	0.68875	3E-8		0.0432271	[0.027-0.059] increase	Affymetrix [NR]	N
1071	chr10	63813801	63813802	rs10761602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10761602-G	NR	6E-13		0.0206617	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63813801	63813802	rs10761602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10761602-G	NR	1E-12		0.0204817	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63813801	63813802	rs10761602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10761602-G	NR	4E-8		0.0164328	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1071	chr10	63814069	63814070	rs725529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q21.2	ARID5B	rs725529-T	0.370894	1E-10		0.015149486	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1071	chr10	63814196	63814197	rs7098633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs7098633-C	NR	4E-8		0.0454297	[0.029-0.062] unit decrease	Affymetrix [321788] (imputed)	N
1071	chr10	63814913	63814914	rs10821951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10821951-A	NR	5E-8		0.0327702	[0.021-0.045] unit increase	Affymetrix [319769] (imputed)	N
1071	chr10	63818424	63818425	rs10821952	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q21.2	ARID5B	rs10821952-A	0.5667	1E-9		0.02286182	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1071	chr10	63819902	63819903	rs10761604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q21.2	NR	rs10761604-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1071	chr10	63819902	63819903	rs10761604	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q21.2	NR	rs10761604-T	0.444	2E-10		0.0112	[0.0079-0.0145] unit increase	NR [~ 27400000] (imputed)	N
1071	chr10	63822383	63822384	rs4948498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.2	NR	rs4948498-A	0.394492	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
1071	chr10	63822383	63822384	rs4948498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q21.2	NR	rs4948498-A	0.370832	1E-21		0.018376	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1071	chr10	63828878	63828879	rs10821953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10821953-A	NR	1E-10		0.0184678	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1071	chr10	63828878	63828879	rs10821953	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	10q21.2	ARID5B	rs10821953-?	NR	2E-8		0.11	unit decrease	Illumina [NR]	N
1071	chr10	63828878	63828879	rs10821953	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q21.2	ARID5B	rs10821953-T	0.5896	1E-26		0.1445	[0.12-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
1071	chr10	63830091	63830092	rs10995024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q21.2	ARID5B	rs10995024-A	NR	1E-10		0.0515574	[0.036-0.067] unit decrease	Affymetrix [321788] (imputed)	N
1071	chr10	63830285	63830286	rs7090871	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	10q21.2	ARID5B	rs7090871-T	0.59	6E-10		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1071	chr10	63831927	63831928	rs35809595	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	10q21.2	ARID5B	rs35809595-?	NA	4E-28		2.68	[2.21-3.15] unit increase	Affymetrix [5541230] (imputed)	N
1071	chr10	63831927	63831928	rs35809595	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Intraocular pressure (Goldman correlated)	6,125 Icelandic ancestry individuals	NA	10q21.2	ARID5B	rs35809595-?	NR	8E-6		0.085	unit decrease	Illumina [NR]	N
1071	chr10	63831927	63831928	rs35809595	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	10q21.2	ARID5B	rs35809595-?	NR	2E-7		0.102	[0.14-0.06] unit decrease	Illumina [NR]	N
1071	chr10	63831927	63831928	rs35809595	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	10q21.2	ARID5B	rs35809595-A	0.39	3E-14		2.43	[1.8-3.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1072	chr10	63832278	63832279	rs12778514	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q21.2	ARID5B	rs12778514-G	0.5902	1E-25		0.1428	[0.11-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
1072	chr10	63835890	63835891	rs7101171	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	PLEKHK1	rs7101171-?	NR	2E-6	(lactose)	0.28003183	[0.17-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1072	chr10	63836087	63836088	rs9633535	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	10q21.2		rs9633535-T	0.407228657	4E-11				Illumina [7417619] (imputed)	N
1072	chr10	63837005	63837006	rs2393730	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	10q21.2	ARID5B	rs2393730-A	0.416	4E-12		2.732	[1.96-3.5] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1072	chr10	63837005	63837006	rs2393730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q21.2		rs2393730-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1072	chr10	63837254	63837255	rs2393728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	NA	ARID5B	rs2393728-A	NR	5E-12		0.0197987	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63837254	63837255	rs2393728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	NA	ARID5B	rs2393728-A	NR	5E-12		0.0198058	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63837254	63837255	rs2393728	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	NA		rs2393728-G	0.576785	2E-27		0.0984095	[0.08-0.117] increase	Affymetrix [11014269] (imputed)	N
1072	chr10	63837289	63837290	rs5785510	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	10q21.2	ARID5B	rs5785510-?	NR	1E-15		0.11	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1072	chr10	63849081	63849082	rs147430423	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	10q21.2	ARID5B	rs147430423-G	0.019	2E-7		1.86	[1.48-2.35]	Illumina [7206774] (imputed)	N
1072	chr10	63854406	63854407	rs2393726	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q21.2	ARID5B	rs2393726-A	0.780565	4E-11	(carnitine)	0.202	[0.14-0.26] unit decrease	Illumina [13039987] (imputed)	N
1072	chr10	63854406	63854407	rs2393726	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10q21.2	ARID5B	rs2393726-A	0.780565	4E-11	(carnitine)	0.202	[0.14-0.26] unit decrease	Illumina [13039987] (imputed)	N
1072	chr10	63861599	63861600	rs1122157	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q21.2	NR	rs1122157-T	0.3066	4E-10		0.0122	[0.0083-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1072	chr10	63863603	63863604	rs118053011	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	10q21.2	ARID5B	rs118053011-C	0.98	1E-7		0.127	[0.08-0.174] unit decrease	Affymetrix [9740198] (imputed)	N
1072	chr10	63867522	63867523	rs10995041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q21.2		rs10995041-C	NR	5E-11		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1072	chr10	63882015	63882016	rs9415646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs9415646-G	NR	4E-15		0.0238201	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63882015	63882016	rs9415646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs9415646-G	NR	7E-15		0.0235813	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63882015	63882016	rs9415646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs9415646-G	NR	1E-10		0.0202564	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1072	chr10	63882015	63882016	rs9415646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs9415646-G	NR	2E-11		0.0202946	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1072	chr10	63882166	63882167	rs76122148	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	10q21.2	AL671972.1	rs76122148-T	0.011	9E-6		0.2151	[0.12-0.31] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1072	chr10	63882681	63882682	rs7070749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs7070749-G	NR	5E-11		0.0186745	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63882681	63882682	rs7070749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs7070749-G	NR	7E-11		0.018541	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63882681	63882682	rs7070749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q21.2	NR	rs7070749-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1072	chr10	63882681	63882682	rs7070749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q21.2		rs7070749-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1072	chr10	63882681	63882682	rs7070749	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q21.2	NA	rs7070749-A	0.5531	2E-10		0.0126	[0.0087-0.0165] unit increase	NR [~ 27400000] (imputed)	N
1072	chr10	63889800	63889801	rs34875072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q21.2	NR	rs34875072-T	NR	9E-11		0.0407	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1072	chr10	63889800	63889801	rs34875072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.2	NR	rs34875072-T	NR	2E-15		0.0522	[0.039-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr10	63893369	63893370	rs77711275	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs77711275-G	NR	5E-8		0.0299806	[0.019-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63903089	63903090	rs12358916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs12358916-C	NR	2E-10		0.0208612	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63903089	63903090	rs12358916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs12358916-C	NR	4E-10		0.0205853	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63904923	63904924	rs4290124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	AL671972.1	rs4290124-T	NR	4E-8		0.0158048	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1072	chr10	63915971	63915972	rs7912580	24751813	Drago A	2014-06-01	Pharmacogenet Genomics	Genome-wide association study supports the role of the immunological system and of the neurodevelopmental processes in response to haloperidol treatment.	Response to haloperidol in psychosis	96 European ancestry cases	NA	10q21.2	ARID5B, RTKN2	rs7912580-A	0.057	1E-6	(Total PANSS scores)			Illumina [1080870] (imputed)	N
1072	chr10	63921696	63921697	rs4979770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q21.2	RTKN2	rs4979770-A	NR	6E-9		0.0165496	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63921696	63921697	rs4979770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q21.2	RTKN2	rs4979770-A	NR	7E-9		0.0164675	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr10	63921696	63921697	rs4979770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.2	RTKN2	rs4979770-A	NR	3E-8		0.0157179	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1072	chr10	63941938	63941939	rs10821967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q21.2		rs10821967-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1072	chr10	63956231	63956232	rs1135436	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q21.2	NR	rs1135436-A	0.141	2E-6		0.0234	[0.014-0.033] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1072	chr10	63958111	63958112	rs3125734	23028356	Myouzen K	2012-09-13	PLoS Genet	Functional variants in NFKBIE and RTKN2 involved in activation of the NF-?B pathway are associated with rheumatoid arthritis in Japanese.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	5,604 Japanese ancestry cases, 31,982 Japanese ancestry controls	10q21.2	RTKN2	rs3125734-T	0.108	5E-9		1.2	[1.13-1.27]	Illumina [NR]	N
1072	chr10	63959928	63959929	rs35576264	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	10q21.2		rs35576264-T	NR	9E-9	(conditional on rs71508903)	0.103	[0.068-0.138] unit increase	NR [13810676] (imputed)	N
1072	chr10	63960610	63960611	rs34390319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q21.2	NR	rs34390319-C	0.10002699999999998	2E-13		0.0147966	[0.011-0.019] unit increase	Affymetrix [16582621] (imputed)	N
1072	chr10	63960610	63960611	rs34390319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q21.2	NR	rs34390319-C	0.10002699999999998	1E-12		0.0152869	[0.011-0.019] unit increase	Affymetrix [16582614] (imputed)	N
1072	chr10	63961164	63961165	rs66964413	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.2	NR	rs66964413-C	0.0368	5E-9	(EA)	0.1034	[0.069-0.138] unit decrease	Illumina [~ 11800000] (imputed)	N
1073	chr10	64000335	64000336	rs79193624	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.2	NR	rs79193624-T	NR	9E-8		1.22	[NR]	Illumina [7158791] (imputed)	N
1073	chr10	64001699	64001700	rs10995092	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	10q21.2	ARID5B	rs10995092-T		2E-7		1.22	[NR]	Illumina [> 644674] (imputed)	N
1073	chr10	64005582	64005582	rs34205992	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	10q21.2	RTKN2	rs34205992-T	0.406	1E-13		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1073	chr10	64036880	64036881	rs6479800	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q21.2	RTKN2	rs6479800-G	NR	8E-8		0.129773	[0.035-0.224] unit decrease	Illumina [8380626] (imputed)	N
1073	chr10	64036880	64036881	rs6479800	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q21.2	RTKN2	rs6479800-G	0.89	7E-7	(East Asian)	0.19699	[0.12-0.27] unit decrease	Illumina [8380626] (imputed)	N
1073	chr10	64036880	64036881	rs6479800	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	RTKN2	rs6479800-C	0.18	4E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1073	chr10	64036880	64036881	rs6479800	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q21.2	RTKN2	rs6479800-C	0.1	4E-6	(East Asian)	1.19	[1.11-1.29]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1073	chr10	64052336	64052337	rs10821973	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	10q21.2	RTKN2, ZNF365	rs10821973-?	NR	4E-8		1.07	[1.04-1.10]	Illumina [13676411] (imputed)	N
1073	chr10	64057201	64057202	rs10761620	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10q21.2	RP11-120C12.3	rs10761620-A	0.449981	3E-15		0.07289879	[0.055-0.091] unit increase	Affymetrix [7288503] (imputed)	N
1073	chr10	64057201	64057202	rs10761620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10q21.2		rs10761620-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1073	chr10	64063076	64063077	rs56139217	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	10q21.2		rs56139217-C	0.113463346	1E-8		1.2361369	[1.149101535-1.329764487]	Illumina [8919992] (imputed)	N
1073	chr10	64063450	64063451	rs35419901	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.2	NR	rs35419901-T	0.0377	8E-11	(EA)	0.1123	[0.078-0.146] unit decrease	Illumina [~ 11800000] (imputed)	N
1073	chr10	64073926	64073927	rs10821977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.2	Intergenic	rs10821977-A	0.5583	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1073	chr10	64087954	64087955	rs72829007	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q21.2	NR	rs72829007-?	NR	6E-9		1.18495	[1.13-1.24]	Affymetrix, Illumina [12447948] (imputed)	N
1074	chr10	64117755	64117756	rs2087625	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	PLEKHK1	rs2087625-?	NR	9E-6	(LPC 18:2)	0.20517033	[0.11-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1074	chr10	64158745	64158746	rs2306970	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	10q21.2	ZNF365	rs2306970-A	0.2897	1E-7		0.0093	[0.0058-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
1074	chr10	64178657	64178657	rs3081227	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	10q21.2	ZNF365	rs3081227-?	NR	3E-15		0.103	[0.129-0.078] unit decrease	Illumina [12039487] (imputed)	N
1074	chr10	64181345	64181346	rs11598767	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q21.2	ZNF365	rs11598767-?	NR	5E-9		0.02437906	[0.016-0.033] unit decrease	NR [7306098]	N
1074	chr10	64187563	64187564	rs7089814	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	10q21.2	ADO, ZNF365, ALDH7A1P4	rs7089814-C	0.375	3E-9		0.096	[0.065-0.127] cup size increase	Illumina [7422970] (imputed)	N
1074	chr10	64197967	64197968	rs113889446	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	10q21.2	NR	rs113889446-G	NR	7E-6		0.1638	[0.092-0.235] SD units increase	NR [10700000] (imputed)	N
1074	chr10	64211639	64211640	rs11598789	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.2	PLEKHK1	rs11598789-?	NR	8E-6	(tyrosine)	0.3582258	[0.2-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1074	chr10	64218422	64218423	rs1949355	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	10q21.2		rs1949355-?	NR	2E-10		0.039	[0.027-0.051] unit decrease	Affymetrix [9906178] (imputed)	N
1074	chr10	64218999	64219000	rs12220488	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	10q21.2	ZNF365	rs12220488-A	0.55	8E-7				Affymetrix, Illumina [~ 2500000] (imputed)	N
1074	chr10	64220493	64220494	rs2138555	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	10q21.2		rs2138555-?	NR	2E-15		0.057	[0.043-0.071] unit decrease	Affymetrix [9906178] (imputed)	N
1074	chr10	64223382	64223383	rs10995170	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	10q21.2	ZNF365	rs10995170-?	NR	3E-7	(High intelligence)	4.42	[2.77-6.07] unit increase	Illumina [795637]	N
1075	chr10	64225447	64225448	rs2077316	23593153	Huertas-Vazquez A	2013-04-04	PLoS One	Novel loci associated with increased risk of sudden cardiac death in the context of coronary artery disease.	Sudden cardiac arrest in coronary artery disease	948 European ancestry cases, 3,050 European ancestry controls	NA	10q21.2	ZNF365	rs2077316-C	0.026	4E-8		2.41	[2.14-2.68]	Illumina [119117]	N
1075	chr10	64251976	64251977	rs10822013	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q21.2		rs10822013-T	NR	3E-27		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1075	chr10	64251976	64251977	rs10822013	21908515	Cai Q	2011-09-09	Hum Mol Genet	Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium.	Breast cancer	2,062 East Asian ancestry cases, 2,066 East Asian ancestry controls	15,091 East Asian ancestry cases, 14,877 East Asian ancestry controls	10q21.2	ZNF365	rs10822013-T	0.47	6E-9		1.12	[1.06-1.18]	Affymetrix [684457]	N
1075	chr10	64257827	64257828	rs10509168	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Percent mammographic density	7,916 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	10q21.2	ZNF365	rs10509168-T	0.41	1E-9				Affymetrix, Illumina [~ 2500000] (imputed)	N
1075	chr10	64273025	64273026	rs10995187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	10q21.2		rs10995187-A	NR	3E-11		0.1054	[0.074-0.136] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q21.2		rs10995190-?	NR	3E-6		0.906918	[0.87-0.95]	NR [682398]	N
1075	chr10	64278681	64278682	rs10995190	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	10q21.2	ZNF365	rs10995190-?	0.84	4E-8		1.1235955	[1.08-1.18]	Illumina [10909381] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	10q21.2	ZNF365	rs10995190-?	0.84	8E-6		1.010101	[0.96-1.06] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10q21.2	NR	rs10995190-G	0.84	2E-29		1.1627907	[1.14-1.2]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10q21.2	NR	rs10995190-G	0.84	2E-37		1.1627907	[1.14-1.2]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	10q21.2	ZNF365	rs10995190-A	0.16	1E-16		0.24	[0.18-0.30] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	10q21.2	ZNF365	rs10995190-G	0.846	1E-7		1.12	[1.08-1.18]	Illumina [NR]	N
1075	chr10	64278681	64278682	rs10995190	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q21.2	ZNF365	rs10995190-G	0.84	1E-36		1.16	[1.14-1.19]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	21278746	Lindstrom S	2011-01-30	Nat Genet	Common variants in ZNF365 are associated with both mammographic density and breast cancer risk.	Percent mammographic density	4,877 European ancestry females	1,145 European ancestry females, 1,690 females	10q21.2	ZNF365	rs10995190-A	0.15	1E-9		0.18	[0.12-0.25] % decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1075	chr10	64278681	64278682	rs10995190	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q21.2	ZNF365	rs10995190-G	0.85	5E-15		1.16	[1.10-1.22]	Illumina [582886]	N
1075	chr10	64288081	64288082	rs10995193	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q21.2		rs10995193-A	NR	1E-8		1.117	[1.075-1.161]	Affymetrix [7846216] (imputed)	N
1075	chr10	64288081	64288082	rs10995193	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10q21.2		rs10995193-A	NR	5E-12		1.1194	NR	Affymetrix [7846216] (imputed)	N
1075	chr10	64299889	64299890	rs10995201	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q21.2		rs10995201-A	NR	5E-52		1.14	[1.12-1.16]	Affymetrix, Illumina [NR] (imputed)	N
1075	chr10	64299889	64299890	rs10995201	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.2	ZNF365	rs10995201-A	0.84	2E-51	(EA)	1.1111112	[1.09-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1075	chr10	64299889	64299890	rs10995201	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	10q21.2	NR	rs10995201-A	0.84	2E-9		1.0752687	[1.02-1.12] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1075	chr10	64300330	64300331	rs78053936	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	10q21.2		rs78053936-A	0.8	2E-8	(conditional)	1.11	[1.07-1.15]	Affymetrix, Illumina [NR] (imputed)	N
1075	chr10	64301940	64301941	rs12249410	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.2	ZNF365	rs12249410-G	0.8923	3E-9		1.0342742		Affymetrix [11880941] (imputed)	N
1075	chr10	64319538	64319539	rs80353807	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.2	NR	rs80353807-G	NR	4E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1075	chr10	64338845	64338846	rs2393895	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	10q21.2	ZNF365	rs2393895-?	NR	2E-7	(Higher ADOS social affect impairment)	1.91	[1.48-2.47]	Illumina [up to 2017939]	N
1075	chr10	64352848	64352849	rs4372325	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	10q21.2		rs4372325-T	0.3794	6E-14		0.92		Affymetrix, Illumina [9397031] (imputed)	N
1075	chr10	64354261	64354262	rs10761648	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q21.2	ZNF365	rs10761648-?	NR	6E-16	(subset analysis)			Illumina [130052]	N
1076	chr10	64369998	64369999	rs2944542	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	10q21.2	ZNF365	rs2944542-G	0.6	2E-8		1.08		Illumina, Perlegen [9113515] (imputed)	N
1076	chr10	64369998	64369999	rs2944542	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	10q21.2	ZNF365	rs2944542-G	0.59	1E-6	(EA, fixed effects)	1.0638298		Illumina [15539996] (imputed)	N
1076	chr10	64375349	64375350	rs6479828	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10q21.2	NR	rs6479828-A	0.592	9E-9		1.0356256	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
1076	chr10	64376557	64376558	rs10822037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10q21.2		rs10822037-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1076	chr10	64381667	64381668	rs7915475	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q21.2	ZNF365	rs7915475-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
1076	chr10	64382358	64382359	rs2893907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.2	ZNF365	rs2893907-C	0.542986	1E-10		0.015684854	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1076	chr10	64382358	64382359	rs2893907	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10q21.2	ZNF365	rs2893907-C	0.55	2E-8				NR [> 9500000] (imputed)	N
1076	chr10	64382358	64382359	rs2893907	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10q21.2	ZNF365	rs2893907-C	0.58	2E-9		1.031	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q21.2	NR	rs10995240-C	0.368331	2E-101		0.043838	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10q21.2	ZNF365	rs10995240-C	0.3688	5E-32		0.04340738	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10q21.2	ZNF365	rs10995240-C	0.369	3E-25		0.03831211	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10q21.2	ZNF365	rs10995240-C	0.3688	6E-28		0.04029797	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10q21.2	ZNF365	rs10995240-C	0.369	3E-26		0.03920218	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64388630	64388631	rs10995240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10q21.2	ZNF365	rs10995240-C	0.3687	1E-32		0.04375177	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64389912	64389912	rs34838577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q21.2	ZNF365	rs34838577-GCTCT	0.363112	1E-13		0.017088989	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	10q21.2		rs10995245-A	NR	1E-9		0.0435	[0.03-0.057] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	10q21.2		rs10995245-?	NR	5E-12		1.07	[1.05-1.1]	Illumina [5170515] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	10q21.2	NR	rs10995245-A	0.3471	2E-9		1.035	[1.024-1.046]	Affymetrix [15688218] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10q21.2	ZNF365	rs10995245-?	NR	4E-10		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10q21.2	ZNF365	rs10995245-A	NR	1E-8		1.042	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1076	chr10	64391374	64391375	rs10995245	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	10q21.2	ZNF365	rs10995245-A	0.348	1E-11		1.23	[1.16-1.31]	Affymetrix [603382]	N
1076	chr10	64391374	64391375	rs10995245	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	10q21.2	ZNF365	rs10995245-A	0.348	3E-7		1.2	[1.09-1.31]	Illumina [111240]	N
1076	chr10	64391845	64391846	rs10995246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q21.2	ZNF365	rs10995246-A	0.368219	7E-75		0.050233167	[0.045-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1076	chr10	64394516	64394517	rs67378703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.2	ZNF365	rs67378703-C	0.374287	2E-28		0.027669853	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1076	chr10	64396041	64396042	rs10995248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	10q21.2		rs10995248-T	0.477632	1E-22		0.043482	[0.035-0.052] unit decrease	Illumina [13470073] (imputed)	N
1076	chr10	64396041	64396042	rs10995248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q21.2		rs10995248-T	NR	4E-75		0.0309	[0.028-0.034] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1076	chr10	64396041	64396042	rs10995248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.2	NR	rs10995248-T	0.37977	3E-126				Affymetrix, Illumina [19872809] (imputed)	N
1076	chr10	64396915	64396916	rs10995249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q21.2		rs10995249-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1076	chr10	64396920	64396921	rs10995250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	10q21.2		rs10995250-A	0.478186992	4E-8		0.07448205	[0.048-0.101] unit decrease	Illumina [13429513] (imputed)	N
1076	chr10	64397537	64397538	rs16917546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	10q21.2	NR	rs16917546-T	0.51742	1E-24		0.049524	[0.04-0.059] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1076	chr10	64397537	64397538	rs16917546	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q21.2	ZNF365	rs16917546-T	NR	6E-6		1.0648494	NR	Affymetrix, Illumina [8278136] (imputed)	N
1076	chr10	64397537	64397538	rs16917546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q21.2		rs16917546-?	NR	1E-94				NR [~ 8900000] (imputed)	N
1076	chr10	64397537	64397538	rs16917546	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	10q21.2	ZNF365	rs16917546-?	NR	4E-10		0.03617	[0.025-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1076	chr10	64397537	64397538	rs16917546	28177523	Lin Y	2017-02-22	Int J Cancer	Association between genetic variation within vitamin D receptor-DNA binding sites and risk of basal cell carcinoma.	Basal cell carcinoma	17,187 European ancestry cases, 287,054 European ancestry controls	NA	10q21.2	ZNF365	rs16917546-C	0.37	3E-7		1.06	[NR]	Affymetrix, Illumina [8262488] (imputed)	N
1076	chr10	64398465	64398466	rs10995251	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10q21.2		rs10995251-C	0.631	3E-53				Affymetrix [10369434] (imputed)	N
1076	chr10	64398465	64398466	rs10995251	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	10q21.2	ZNF365	rs10995251-C	0.511	6E-20		1.28	[1.22-1.36]	Illumina [606164]	N
1076	chr10	64401430	64401431	rs58871716	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10q21.2		rs58871716-C	0.951	2E-30				Affymetrix [10369434] (imputed)	N
1076	chr10	64401835	64401836	rs10995254	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q21.2	NR	rs10995254-T	0.707	4E-8		1.092	[1.06-1.12]	Illumina [11270530] (imputed)	N
1076	chr10	64402432	64402433	rs10995255	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	10q21.2		rs10995255-?	NR	6E-14		0.81	[0.76-0.85]	Illumina [9900441] (imputed)	N
1076	chr10	64402432	64402433	rs10995255	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	10q21.2	ZNF365	rs10995255-A	0.36587	7E-11		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
1076	chr10	64402432	64402433	rs10995255	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	10q21.2	ZNF365	rs10995255-A	0.359747	4E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1076	chr10	64402433	64402434	rs10995256	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	10q21.2		rs10995256-T	0.481433715	1E-10		0.8158572	[0.766719863-0.868143594]	Illumina [8919992] (imputed)	N
1076	chr10	64408207	64408208	rs4746508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.2	NR	rs4746508-T	NR	2E-9		0.0212	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr10	64408786	64408787	rs10995258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	10q21.2		rs10995258-T	NR	2E-9		0.1247	[0.084-0.166] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
1076	chr10	64415183	64415184	rs7076156	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q21.2	ADO, ZNF365, ERG2	rs7076156-G	0.751	7E-9		1.19	[1.10-1.30]	Affymetrix, Illumina [1060934] (imputed)	N
1076	chr10	64418655	64418656	rs7915131	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q21.2	ZNF365	rs7915131-C	NR	3E-7		1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
1076	chr10	64418655	64418656	rs7915131	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q21.2	ZNF365	rs7915131-C	NR	3E-6	(EA)	1.0521885	[1.03-1.07]	Illumina [6627481] (imputed)	N
1076	chr10	64418655	64418656	rs7915131	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10q21.2	intergenic	rs7915131-C	NR	6E-7		1.048218	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1076	chr10	64423415	64423416	rs34299154	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q21.2	ZNF365	rs34299154-C	NR	5E-7		1.0644	NR	Affymetrix, Illumina [8278136] (imputed)	N
1076	chr10	64425125	64425126	rs4745876	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	10q21.2	ZNF365	rs4745876-A	NR	4E-8		0.88	[0.83-0.93]	Illumina [NR] (imputed)	N
1076	chr10	64425125	64425126	rs4745876	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	10q21.2	ZNF365	rs4745876-A	NR	1E-6		0.876	[0.82-0.93]	Illumina [5719137] (imputed)	N
1076	chr10	64431205	64431206	rs12413946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10q21.2	ZNF365	rs12413946-C	0.0499	7E-23		0.08064479	[0.065-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64431205	64431206	rs12413946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10q21.2	ZNF365	rs12413946-C	0.05	6E-16		0.06632098	[0.05-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64431205	64431206	rs12413946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10q21.2	ZNF365	rs12413946-C	0.05	5E-20		0.07486198	[0.059-0.091] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64431205	64431206	rs12413946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10q21.2	ZNF365	rs12413946-C	0.0499	8E-18		0.07057027	[0.054-0.087] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64431205	64431206	rs12413946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10q21.2	ZNF365	rs12413946-C	0.05	1E-23		0.08208962	[0.066-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr10	64437472	64437473	rs12775438	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	10q21.2	ZNF365	rs12775438-C	0.616849	1E-8		1.0358254	[1.02339071472577-1.04841114017365]	NR [9572556] (imputed)	N
1076	chr10	64438485	64438486	rs10995271	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q21.2	ZNF365	rs10995271-?	NR	3E-48	(subset analysis)			Illumina [130052]	N
1076	chr10	64438485	64438486	rs10995271	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10q21.2	ZNF365	rs10995271-C	0.39	4E-20		1.25	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1076	chr10	64438770	64438771	rs10822050	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	10q21.2	ZNF365	rs10822050-C	0.39	8E-11				Illumina [7347414] (imputed)	N
1076	chr10	64439392	64439393	rs73289263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.2		rs73289263-G	0.049989	2E-39		0.068682894	[0.058-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1076	chr10	64439392	64439393	rs73289263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q21.2		rs73289263-G	0.049989	7E-61		0.08576228	[0.076-0.096] unit increase	Affymetrix [93095623] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	10q21.2		rs10761659-?	NR	2E-20		0.077	NR unit increase	NR [5890016] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	10q21.2	NR	rs10761659-A	0.46	1E-11		0.89	[NR]	NR [8546065] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	10q21.2	ADO, ZNF365	rs10761659-?		1E-15				Illumina [9578670] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q21.2	ADO, ZNF365	rs10761659-?		2E-36				Illumina [9725440] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q21.2	ADO, ZNF365	rs10761659-?		8E-29				Illumina [9560910] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.2	NR	rs10761659-G	0.54	2E-20	(EA)	1.1244732		Affymetrix, Illumina [~ 9000000] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.2	NR	rs10761659-G	0.54	5E-53	(EA)	1.1662705		Affymetrix, Illumina [~ 9000000] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.2	NR	rs10761659-G	0.54	1E-49	(EA)	1.1978161	[1.17-1.22]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q21.2	intergenic	rs10761659-G	0.543	6E-46		1.166	[1.134-1.20]	Affymetrix, Illumina [1230000] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	10q21.2	ZNF365	rs10761659-G	NR	5E-6		1.28	[NR]	Illumina [508934]	N
1076	chr10	64445563	64445564	rs10761659	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10q21.2	ZNF365	rs10761659-G	0.538	4E-22		1.23	[1.18-1.29]	Affymetrix, Illumina [953241] (imputed)	N
1076	chr10	64445563	64445564	rs10761659	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10q21.2	intergenic	rs10761659-G	0.46	2E-6		1.23	[1.05-1.45]	Affymetrix [469557]	N
1076	chr10	64447962	64447963	rs72834725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.2	NR	rs72834725-T	NR	8E-10		0.0389	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr10	64449548	64449549	rs61863928	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q21.2	ZNF365	rs61863928-G	NR	3E-16		1.0891	NR	Affymetrix, Illumina [8278136] (imputed)	N
1076	chr10	64454496	64454497	rs10995278	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	10q21.2	NR	rs10995278-?	NR	8E-6		0.0898	unit decrease	Affymetrix, Illumina [up to 1078289] (imputed)	N
1076	chr10	64465557	64465559	rs66492049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q21.2		rs66492049-C	0.546433	2E-23		0.028011031	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1076	chr10	64470674	64470675	rs224136	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	10q21.2	ZNF365	rs224136-?	NR	1E-7		1.0752687	[1.05-1.11]	NR [7424691] (imputed)	N
1076	chr10	64470674	64470675	rs224136	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	10q21.2	ZNF365	rs224136-?	0.703	9E-9		1.5873016	NR	NR [4335144] (imputed)	N
1076	chr10	64470674	64470675	rs224136	17435756	Rioux JD	2007-04-15	Nat Genet	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 cases, 977 controls	530 trios, 353 cases, 207 controls	10q21.2	intergenic	rs224136-?	0.81	1E-10		1.67	[NR]	Illumina [304413]	N
1076	chr10	64477835	64477836	rs224143	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	10q21.2	ZNF365	rs224143-G	0.59	2E-9		1.38	[1.24-1.53]	Illumina [549616] (imputed)	N
1076	chr10	64478831	64478832	rs35306388	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.2	NR	rs35306388-G	0.0391	2E-10	(EA)	0.1041	[0.072-0.136] unit decrease	Illumina [~ 11800000] (imputed)	N
1076	chr10	64484680	64484681	rs438694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	10q21.2		rs438694-C	0.192973869	1E-10		0.20064609	[0.14-0.26] unit increase	Illumina [13428180] (imputed)	N
1077	chr10	64490494	64490495	rs442309	25108386	Hou S	2014-08-10	Nat Genet	Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.	Vogt-Koyanagi-Harada syndrome	774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls	764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls	10q21.2	EGR2, ADO, ZNF365	rs442309-T	.256	3E-11		1.37	[1.25-1.51]	Affymetrix, Illumina [2208258] (imputed)	N
1077	chr10	64503348	64503349	rs224063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q21.2	ALDH7A1P4	rs224063-T	0.596191	3E-13		0.016728295	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr10	64505085	64505086	rs117846724	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	10q21.2	ZNF365, ADO	rs117846724-?	NR	7E-6		1.24	[1.11-1.39]	Illumina [at least 5000000] (imputed)	N
1077	chr10	64507294	64507295	rs10995301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q21.2		rs10995301-G	NR	1E-10		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1077	chr10	64507903	64507904	rs58600253	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	10q21.2	intergenic	rs58600253-T	0.120	3E-12		1.22	[NR]	Illumina [4577171] (imputed)	N
1077	chr10	64510777	64510778	rs16917691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	10q21.2		rs16917691-C	NR	9E-9		0.2009	[0.13-0.27] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1077	chr10	64516305	64516306	rs10761660	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	10q21.2	ZNF365, ADO, EGR2	rs10761660-T	NR	9E-6		1.17234		Illumina [1233578] (imputed)	N
1077	chr10	64519298	64519299	rs224029	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10q21.2	NR	rs224029-C	0.6005	3E-10		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1077	chr10	64524991	64524992	rs224043	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.2	AC067751.1	rs224043-T	0.5677	1E-17		0.0163	[0.013-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1077	chr10	64525134	64525135	rs10761661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.2	ALDH7A1P4	rs10761661-T	NR	2E-8		0.015898	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1077	chr10	64525134	64525135	rs10761661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q21.2	ALDH7A1P4	rs10761661-T	NR	3E-9		0.0182819	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1077	chr10	64525134	64525135	rs10761661	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	10q21.2	ADO	rs10761661-C	0.528	5E-8		0.95009	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
1077	chr10	64525134	64525135	rs10761661	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	10q21.2	NR	rs10761661-C	NR	3E-8		1.06	NR	NR [8016731] (imputed)	N
1077	chr10	64525546	64525547	rs224045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q21.2	ALDH7A1P4	rs224045-T	NR	9E-9		0.0179187	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1077	chr10	64525546	64525547	rs224045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.2		rs224045-?	NR	4E-22				NR [~ 8900000] (imputed)	N
1077	chr10	64530181	64530182	rs80035273	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.2	NR	rs80035273-T	NR	2E-10		0.0346	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr10	64532594	64532595	rs448355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q21.2		rs448355-C	NR	1E-19		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1077	chr10	64538278	64538279	rs7922314	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	10q21.2	ADO	rs7922314-C	0.9206	2E-6		1.33	NR	Illumina [11532644] (imputed)	N
1077	chr10	64541318	64541319	rs224090	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q21.2	NR	rs224090-A	0.4075	4E-26	(EA)	1.1376477	[1.11-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1077	chr10	64552009	64552010	rs224111	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	10q21.2	ADO, EGR2, ZNF365	rs224111-G		2E-17		0.0074	[0.0056-0.0092] unit increase	Affymetrix [13304133] (imputed)	N
1077	chr10	64552009	64552010	rs224111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q21.2	RP11-436D10.3	rs224111-A	0.388232	3E-19		0.020947536	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr10	64552009	64552010	rs224111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.2	NR	rs224111-A	0.401159	2E-28				Affymetrix, Illumina [23467995] (imputed)	N
1077	chr10	64552009	64552010	rs224111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q21.2	NR	rs224111-A	0.390158	1E-27		0.020934	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1077	chr10	64552140	64552141	rs34866184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q21.2		rs34866184-C	NR	1E-15		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1077	chr10	64552241	64552242	rs10995307	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10q21.2	RP11-436D10.3	rs10995307-C	0.500042	8E-9		0.0455296	[0.03-0.061] unit decrease	Affymetrix [7288503] (imputed)	N
1077	chr10	64552933	64552934	rs1848797	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q21.2	ADO	rs1848797-A	0.63	2E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1077	chr10	64552933	64552934	rs1848797	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	ZNF365, ADO	rs1848797-A		1E-11		0.265	unit increase	Affymetrix [at least 2696785] (imputed)	N
1077	chr10	64552933	64552934	rs1848797	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.2	ZNF365, ADO	rs1848797-A		1E-15		0.191	unit increase	Affymetrix [at least 2696785] (imputed)	N
1077	chr10	64559464	64559465	rs72834751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.2	RP11-436D10.3	rs72834751-T	0.012534	3E-9		0.06245985	[0.042-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr10	64560469	64560470	rs1444418	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	10q21.3	EGR2, ADO	rs1444418-A	0.676	2E-7		1.17	[1.10-1.24]	Illumina [606164]	N
1077	chr10	64561505	64561506	rs12220700	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	10q21.3	ADO	rs12220700-G	NR	3E-8		0.799		Illumina [up to 1244428] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q21.3		rs2236295-T	NR	1E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q21.3		rs2236295-T	NR	3E-12		0.0374	[0.027-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	10q21.3	NR	rs2236295-G	0.6	6E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	10q21.3	NR	rs2236295-G	0.6	6E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs2236295-T	0.349699	3E-10				Affymetrix, Illumina [24332387] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q21.3	RP11-436D10.3	rs2236295-T	0.402916	4E-12		0.04304643	[0.031-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q21.3		rs2236295-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	10q21.3	ADO	rs2236295-G	0.593	1E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix [11709857] (imputed)	N
1077	chr10	64564891	64564892	rs2236295	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks)	98 European ancestry cases and controls	NA	10q21.3	ADO	rs2236295-A	0.52	5E-6	(CGI)	4.14		Illumina [266820] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q21.3		rs10995311-G	NR	5E-18		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q21.3		rs10995311-G	NR	4E-16		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10q21.3	ADO	rs10995311-C	0.554	8E-10	(EA)	0.013	[0.0091-0.0169] unit increase	NR [12082474] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.3		rs10995311-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q21.3		rs10995311-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10q21.3	ADO	rs10995311-C	0.553	4E-8		0.00921	[0.0059-0.0125] unit increase	Affymetrix [11709857] (imputed)	N
1077	chr10	64564933	64564934	rs10995311	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	10q21.3	ADO	rs10995311-G	0.381	2E-11		0.2	[0.14-0.26] unit decrease	Illumina [247039]	N
1077	chr10	64564933	64564934	rs10995311	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q21.3	ADO	rs10995311-C	0.575	2E-6		0.2251	[0.13-0.32] mmHg increase	Illumina [242296]	N
1077	chr10	64564933	64564934	rs10995311	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q21.3	ADO	rs10995311-C	0.5663	1E-12		0.205	mmHg increase	Illumina [242296]	N
1077	chr10	64566257	64566258	rs224082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q21.3	ADO	rs224082-T	0.376768	7E-17		0.019575749	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr10	64566257	64566258	rs224082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q21.3	ADO	rs224082-T	0.376738	3E-25		0.023870934	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr10	64566571	64566572	rs10995312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q21.3	ADO	rs10995312-C	0.126239	1E-14		0.025803111	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1077	chr10	64566571	64566572	rs10995312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q21.3	NR	rs10995312-C	0.126286	6E-20		0.0261	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1077	chr10	64572092	64572093	rs61865882	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	10q21.3		rs61865882-?	NR	3E-9		0.75	[0.68-0.83]	Illumina [9900441] (imputed)	N
1077	chr10	64580429	64580430	rs10995316	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs10995316-C	0.0779209	3E-20				Affymetrix, Illumina [23472807] (imputed)	N
1077	chr10	64580574	64580575	rs224278	22327514	Postel-Vinay S	2012-02-12	Nat Genet	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	10q21.3	EGR2, ADO, ZNF365	rs224278-C	0.58	4E-17		1.66	[1.42-1.93]	NR [286966]	N
1077	chr10	64582481	64582482	rs61865900	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs61865900-C	0.0623	2E-9	(EA)	0.078	[0.053-0.103] unit decrease	Illumina [~ 11800000] (imputed)	N
1077	chr10	64584809	64584810	rs224285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q21.3		rs224285-G	NR	4E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1077	chr10	64594163	64594164	rs2136613	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q21.3	EGR2, ADO	rs2136613-T		7E-7		0.8	[NR]	Illumina [up to 9464381] (imputed)	N
1077	chr10	64595443	64595461	rs113786869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q21.3	EGR2	rs113786869-A	0.47321	2E-15		0.01792204	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1077	chr10	64604164	64604165	rs72832032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs72832032-A	NR	3E-10		0.0518	[0.036-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr10	64618339	64618340	rs10761674	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	10q21.3	NR	rs10761674-C	NR	2E-8		0.696	unit increase	Affymetrix [14661600] (imputed)	N
1077	chr10	64618477	64618478	rs12219294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q21.3		rs12219294-G	0.921	7E-17				Affymetrix [10369434] (imputed)	N
1078	chr10	64619337	64619338	rs1980663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q21.3		rs1980663-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1078	chr10	64627635	64627636	rs10822073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.3	EGR2	rs10822073-C	0.141325	4E-14		0.024466	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr10	64627635	64627636	rs10822073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q21.3	EGR2	rs10822073-C	0.141297	4E-24		0.032993644	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr10	64629704	64629705	rs10740092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	EGR2	rs10740092-G	NR	1E-9		0.0176529	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1078	chr10	64633449	64633450	rs11591796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs11591796-C	NR	2E-9		0.0331	[0.022-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1078	chr10	64644166	64644167	rs10822079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10q21.3	NR	rs10822079-T	NR	4E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1078	chr10	64648302	64648303	rs117643757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117643757-G	NR	5E-15		0.0684	[0.051-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1078	chr10	64649395	64649396	rs113764414	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	10q21.3	Intergenic	rs113764414-A	0.672	5E-7		1.078	[NR]	Illumina [9112387] (imputed)	N
1078	chr10	64655912	64655913	rs10995356	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	10q21.3	EGR2	rs10995356-A	0.39	3E-6	(Reward dependence)	0.11	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1078	chr10	64673404	64673405	rs10740094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q21.3	NR	rs10740094-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1078	chr10	64677306	64677307	rs10822082	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10q21.3	EGR2	rs10822082-T	0.5272	4E-8		0.010671918	[0.0069-0.0145] unit decrease	Illumina [9339358] (imputed)	N
1078	chr10	64692352	64692353	rs76720453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q21.3		rs76720453-?	NR	8E-28				NR [~ 8900000] (imputed)	N
1078	chr10	64721199	64721200	rs34146356	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs34146356-T	0.0418	5E-8	(EA)	0.0861	[0.055-0.117] unit decrease	Illumina [~ 11800000] (imputed)	N
1079	chr10	64760529	64760530	rs2842280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs2842280-G	NR	1E-10		0.0589	[0.041-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64760685	64760686	rs10995388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs10995388-T	NR	3E-12		0.0267	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64762673	64762674	rs77629178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs77629178-T	NR	2E-15		0.0671	[0.05-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64769846	64769847	rs1509826	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	JMJD1C	rs1509826-?	NR	6E-7	(TAG 58:11)	0.23278436	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1079	chr10	64770247	64770248	rs2664328	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	JMJD1C	rs2664328-?	NR	6E-7	(TAG 58:11)	0.23278436	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1079	chr10	64772469	64772470	rs2842286	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	JMJD1C	rs2842286-?	NR	6E-7	(TAG 58:11)	0.23278436	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1079	chr10	64814978	64814979	rs75156222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs75156222-A	NR	5E-11		0.0671	[0.047-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64817374	64817375	rs34942900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs34942900-T	NR	9E-15		0.0547	[0.041-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64817374	64817375	rs34942900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs34942900-T	NR	3E-11		0.0447	[0.032-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64818870	64818871	rs73284446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs73284446-G	NR	3E-12		0.0269	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64818870	64818871	rs73284446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs73284446-G	NR	2E-37		0.0491	[0.042-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64818870	64818871	rs73284446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs73284446-G	NR	5E-13		0.0264	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64819809	64819810	rs2457448	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	JMJD1C	rs2457448-?	NR	6E-6	(TAG 56:10)	0.22555675	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1079	chr10	64819995	64819996	rs6479868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	10q21.3		rs6479868-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1079	chr10	64819995	64819996	rs6479868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q21.3		rs6479868-G	0.804	9E-13				Affymetrix [10369434] (imputed)	N
1079	chr10	64824306	64824307	rs117472339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs117472339-T	NR	7E-11		0.0429	[0.03-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64824306	64824307	rs117472339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117472339-T	NR	3E-19		0.059	[0.046-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64824306	64824307	rs117472339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs117472339-T	NR	7E-10		0.0386	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64832895	64832896	rs117212404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117212404-T	NR	2E-11		0.0591	[0.042-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64838395	64838396	rs10822125	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q21.3		rs10822125-T	0.5989	5E-8		39.779556	z score increase	NR [6814003]	N
1079	chr10	64839646	64839647	rs4320850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q21.3	NR	rs4320850-C	NR	2E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr10	64839646	64839647	rs4320850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs4320850-C	NR	8E-16		0.032	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64839646	64839647	rs4320850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs4320850-C	NR	1E-55		0.0624	[0.055-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64839646	64839647	rs4320850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs4320850-C	NR	2E-38		0.049	[0.042-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64840017	64840018	rs10995426	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q21.3	RNU6-543P	rs10995426-?	NR	2E-10		0.013567267	[0.0094-0.0177] unit decrease	NR [7306098]	N
1079	chr10	64840664	64840665	rs7904321	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	RNU6-543P	rs7904321-A	NR	9E-9		0.017097129	[0.011-0.023] unit increase	Affymetrix [NR]	N
1079	chr10	64841273	64841274	rs61853274	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	10q21.3	intergenic	rs61853274-?	NR	2E-8		0.0179012	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1079	chr10	64842837	64842838	rs10995427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.3	NR	rs10995427-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1079	chr10	64848936	64848937	rs12765365	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	10q21.3	NR	rs12765365-?	NR	9E-9				Illumina [~ 10800000] (imputed)	N
1079	chr10	64848936	64848937	rs12765365	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs12765365-C	0.0376	2E-8	(EA)	0.0979	[0.064-0.132] unit decrease	Illumina [~ 11800000] (imputed)	N
1079	chr10	64857871	64857872	rs111364339	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q21.3	NRBF2	rs111364339-C	NR	1E-8		1.1061947	[1.07-1.14]	Illumina [6627481] (imputed)	N
1079	chr10	64857871	64857872	rs111364339	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10q21.3	JMJD1C, NRBF2	rs111364339-C	NR	5E-9		1.1037527	[1.07-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1079	chr10	64862476	64862477	rs112222723	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q21.3	NR	rs112222723-?	NR	1E-9		1.0919892	[1.06-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
1079	chr10	64866911	64866912	rs10995439	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.3	NR	rs10995439-G	0.500403761034329	3E-6	(IGP34)	0.1441	[0.084-0.205] unit increase	Illumina [~ 2500000] (imputed)	N
1079	chr10	64866911	64866912	rs10995439	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.3	NR	rs10995439-G	0.500403761034329	1E-7	(IGP33)	0.1635	[0.1-0.22] unit increase	Illumina [~ 2500000] (imputed)	N
1079	chr10	64869669	64869670	rs10995442	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q21.3		rs10995442-?	NR	5E-6		0.12	[0.069-0.171] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1079	chr10	64871858	64871859	rs541030121	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q21.3	NR	rs541030121-A	0.06496100000000005	6E-15		0.0163499	[0.012-0.021] unit increase	Affymetrix [16582909] (imputed)	N
1079	chr10	64871858	64871859	rs541030121	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q21.3	NR	rs541030121-A	0.06496100000000005	2E-14		0.0177431	[0.013-0.022] unit increase	Affymetrix [16582965] (imputed)	N
1079	chr10	64872410	64872411	rs10822136	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.3	NR	rs10822136-C	0.805465852941177	7E-7	(IGP25)	0.2085	[0.13-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1079	chr10	64872410	64872411	rs10822136	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q21.3	NR	rs10822136-C	0.805344702630406	5E-7	(IGP30)	0.2106	[0.13-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1079	chr10	64875310	64875311	rs7903602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10q21.3		rs7903602-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1079	chr10	64875744	64875745	rs4545434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs4545434-T	0.8176	2E-9	(MTAG)	0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1079	chr10	64876553	64876554	rs7084569	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	10q21.3	NR	rs7084569-G	0.52	4E-50		1.19	NR	NR [8853336] (imputed)	N
1079	chr10	64877937	64877938	rs7901794	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q21.3	NR	rs7901794-C	NR	7E-6		1.1235955	[NR]	Illumina [7158791] (imputed)	N
1079	chr10	64878117	64878118	rs6479877	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	10q21.3	NR	rs6479877-C	0.5322	1E-10	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1079	chr10	64878117	64878118	rs6479877	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q21.3	NR	rs6479877-G		1E-7		0.0897	[0.056-0.123] SD units increase	NR [10700000] (imputed)	N
1079	chr10	64880225	64880226	rs4522053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs4522053-C	NR	1E-10		0.0554	[0.039-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr10	64880225	64880226	rs4522053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs4522053-C	NR	3E-13		0.0599	[0.044-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	9E-16		0.0325717	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-21		0.0379009	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	4E-26		0.0424054	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	7E-19		0.0358421	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	1E-15		0.0322414	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	4E-20		0.0370409	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	1E-12		0.0288023	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-21		0.0378061	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	5E-22		0.0385747	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-9		0.0245438	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	7E-20		0.0366412	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	1E-18		0.0352811	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-11		0.027426	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-8		0.0233036	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	1E-18		0.0353155	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	8E-14		0.0304353	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-14		0.0315481	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	5E-17		0.0336651	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-18		0.0349552	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	5E-10		0.0255171	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	10q21.3		rs10761716-C	0.558511	5E-14		0.0308576	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-10		0.0260702	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	8E-16		0.0324044	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-16		0.032902	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-18		0.0350606	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-12		0.0289032	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	4E-18		0.0348206	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-17		0.0355473	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	2E-8		0.0230705	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	3E-9		0.0244577	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	5E-12		0.0280507	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761716-C	0.55849	6E-13		0.0292614	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q21.3		rs10761716-C	0.558918	2E-11		0.048734	[0.034-0.064] increase	Affymetrix [NR]	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-24				Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-29				Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q21.3	EGR2, NRBF2	rs10761716-G	NR	5E-16		0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q21.3	EGR2, NRBF2	rs10761716-G	NR	1E-8	(EA)	0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q21.3	EGR2, NRBF2	rs10761716-G	NR	1E-6	(Asian)	0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-7	(EA)	0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q21.3	EGR2, NRBF2	rs10761716-G	NR	1E-12		0.017	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	9E-8				Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64882299	64882300	rs10761716	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q21.3	EGR2, NRBF2	rs10761716-G	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
1080	chr10	64884736	64884737	rs61853335	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs61853335-T	0.1769	3E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1080	chr10	64887855	64887856	rs10822143	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q21.3	NRBF2	rs10822143-C	0.495725	1E-13		0.00372309	[0.0027-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1080	chr10	64899892	64899893	rs7088425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs7088425-G	0.0362984	2E-45				Affymetrix, Illumina [24246363] (imputed)	N
1080	chr10	64899892	64899893	rs7088425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q21.3	NR	rs7088425-G	0.03407	4E-48		0.07349	[0.064-0.083] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1080	chr10	64899892	64899893	rs7088425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs7088425-G	0.0363078	1E-43				Affymetrix, Illumina [20825802] (imputed)	N
1080	chr10	64899892	64899893	rs7088425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q21.3	NR	rs7088425-G	0.034008	8E-46		0.075933	[0.065-0.086] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1080	chr10	64904070	64904071	rs7073746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q21.3		rs7073746-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1080	chr10	64905217	64905218	rs149472343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q21.3		rs149472343-T	NR	1E-22		0.065	[0.052-0.078] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1080	chr10	64905217	64905218	rs149472343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q21.3		rs149472343-T	NR	2E-27		0.0718	[0.059-0.085] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1080	chr10	64905217	64905218	rs149472343	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q21.3		rs149472343-C	0.967	1E-19		0.28	[0.22-0.34] % increase	Affymetrix [NR] (imputed)	N
1080	chr10	64907583	64907591	rs11278263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	10q21.3		rs11278263-T	NR	2E-19		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1080	chr10	64914466	64914467	rs1046521	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	10q21.3	NRBF2	rs1046521-A	0.6965	9E-8		0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1080	chr10	64916030	64916031	rs35562567	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10q21.3	NR	rs35562567-?	NR	4E-11	(CXCL5)	0.332779	[0.23-0.43] unit increase	Illumina [11901634] (imputed)	N
1080	chr10	64916063	64916064	rs200434675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q21.3	NRBF2	rs200434675-T	0.050971	3E-10		0.035754964	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64916063	64916064	rs200434675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q21.3	NRBF2	rs200434675-T	0.05096	1E-12		0.040520374	[0.029-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64916063	64916064	rs200434675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q21.3	NRBF2	rs200434675-T	0.050958	7E-16		0.04608668	[0.035-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64916468	64916469	rs1009984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q21.3		rs1009984-G	NR	6E-14		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1080	chr10	64916650	64916651	rs72829144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q21.3	NRBF2	rs72829144-A	0.033232	3E-42		0.0801692	[0.069-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr10	64916650	64916651	rs72829144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q21.3	NRBF2	rs72829144-A	0.033237	1E-42		0.08454234	[0.072-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr10	64916650	64916651	rs72829144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q21.3		rs72829144-?	NR	3E-43				NR [~ 8900000] (imputed)	N
1080	chr10	64916650	64916651	rs72829144	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q21.3	NRBF2	rs72829144-A	0.0338	4E-17		0.08258962	[0.063-0.102] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	64916650	64916651	rs72829144	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q21.3	NRBF2	rs72829144-A	0.0338	3E-18		0.08557437	[0.066-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	64918574	64918575	rs7906688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs7906688-G	NR	2E-15		0.063	[0.048-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64918574	64918575	rs7906688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs7906688-G	NR	5E-10		0.0471	[0.032-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64923226	64923227	rs112023979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q21.3		rs112023979-G	NR	5E-9		0.0686	[0.046-0.092] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1080	chr10	64926225	64926226	rs7078927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q21.3	JMJD1C	rs7078927-C	0.031892	4E-36		0.08004379	[0.068-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64927822	64927823	rs1935	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q21.3	JMJD1C	rs1935-C	0.52661	1E-300		0.0101185	[0.0097-0.0106] unit decrease	Affymetrix [13995440] (imputed)	N
1080	chr10	64927822	64927823	rs1935	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	10q21.3	JMJD1C	rs1935-C	0.476	2E-29		0.05	[0.06-0.04] unit decrease	Illumina [NR] (imputed)	N
1080	chr10	64927822	64927823	rs1935	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	10q21.3	JMJD1C	rs1935-C	0.5168	1E-6		0.011	[0.0065-0.0155] unit increase	Affymetrix, Illumina [at least 228985]	N
1080	chr10	64927822	64927823	rs1935	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	10q21.3	JMJD1C	rs1935-?		9E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [43000000] (imputed)	N
1080	chr10	64927822	64927823	rs1935	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q21.3	NR	rs1935-?		5E-9	(CXCL5)	0.1672	[NR] unit increase	Illumina [NR]	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	4E-29		0.0446623	[0.037-0.052] unit increase	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	5E-13		0.0289371	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523162	1E-8		0.0221068	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	1E-26		0.0420933	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	7E-10		0.0246167	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	8E-28		0.0429728	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	1E-11		0.0276246	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	6E-9		0.0238623	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	8E-16		0.0322187	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	1E-13		0.0303068	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	6E-18		0.0344712	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	3E-13		0.030324	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10822145-C	0.523143	1E-17		0.0340922	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q21.3	JMJD1C	rs10822145-T	0.47519	1E-11		0.015380355	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q21.3	JMJD1C	rs10822145-T	0.475242	6E-11		0.0149674155	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs10822145-C	NR	1E-20		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs10822145-C	0.538	1E-18	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	64934547	64934548	rs10822145	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	10q21.3	JMJD1C	rs10822145-C	0.5	7E-11		0.038	[0.026-0.05] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1080	chr10	64940113	64940114	rs12250472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs12250472-C	NR	7E-10		0.0796	[0.054-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1080	chr10	64941984	64941985	rs72829173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q21.3	NR	rs72829173-A	0.031484	2E-12		0.037459	[0.027-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1080	chr10	64950109	64950110	rs59050225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q21.3		rs59050225-T	0.191091925	1E-8		0.06684064	[0.044-0.09] unit decrease	Illumina [13429769] (imputed)	N
1080	chr10	64950109	64950110	rs59050225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q21.3		rs59050225-T	NR	7E-12		0.0726	[0.052-0.093] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1080	chr10	64952834	64952835	rs41274064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs41274064-A	NR	1E-14		0.0484	[0.036-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1080	chr10	64952834	64952835	rs41274064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs41274064-A	NR	1E-11		0.0405	[0.029-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1080	chr10	64955580	64955581	rs10761723	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs10761723-?	NR	4E-12		0.0405	[0.029-0.052] unit increase novel	Illumina [6108953] (imputed)	N
1080	chr10	64957590	64957591	rs35997229	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs35997229-C	0.0431	3E-7	(EA)	0.0829	[0.051-0.115] unit decrease	Illumina [~ 11800000] (imputed)	N
1080	chr10	64958990	64958991	rs4291564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs4291564-A	NR	7E-15		0.0669	[0.05-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64958990	64958991	rs4291564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs4291564-A	NR	9E-15		0.0634	[0.047-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64960754	64960755	rs117286393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117286393-C	NR	2E-15		0.0586	[0.044-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64960754	64960755	rs117286393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs117286393-C	NR	3E-22		0.068	[0.054-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64963448	64963449	rs4379723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs4379723-T	0.529045	1E-712				Affymetrix, Illumina [17210439] (imputed)	N
1080	chr10	64963448	64963449	rs4379723	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	10q21.3	NR	rs4379723-?	NR	2E-20		5.051907	[3.99-6.12] unit increase	Illumina [30743395] (imputed)	N
1080	chr10	64963448	64963449	rs4379723	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	10q21.3	JMJD1C	rs4379723-T	NR	7E-7		5.4297	[3.28-7.58] unit decrease	Illumina [544917]	N
1080	chr10	64970927	64970928	rs111765639	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q21.3	NR	rs111765639-G	0.876	5E-12		0.0581	[0.042-0.075] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1080	chr10	64974155	64974156	rs41274072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs41274072-C	NR	9E-13		0.0505	[0.037-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1080	chr10	64974155	64974156	rs41274072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q21.3	JMJD1C	rs41274072-C	0.0317	4E-16		0.08236992	[0.063-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	64974155	64974156	rs41274072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q21.3	JMJD1C	rs41274072-C	0.0317	1E-9		0.06188018	[0.042-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	64974379	64974380	rs41274074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs41274074-C	NR	2E-11		0.0475	[0.034-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1080	chr10	64976133	64976133	rs148928116	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q21.3	JMJD1C	rs148928116-T	0.795	3E-13		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q21.3		rs7916868-T	NR	7E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q21.3		rs7916868-T	NR	5E-10		0.0589	[0.04-0.078] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs7916868-?		2E-10		0.026	[0.018-0.034] unit decrease	Illumina [31500000] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	10q21.3	JMJD1C	rs7916868-A	0.49678999	2E-30		0.0240719	[0.02-0.028] unit increase	Affymetrix [9463307] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	10q21.3	JMJD1C	rs7916868-A	0.49678999	2E-9		0.00546177	[0.0037-0.0072] unit decrease	Affymetrix [9463307] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.3		rs7916868-?	NR	9E-26				NR [~ 8900000] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs7916868-?	NR	1E-10		0.0329	[0.023-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		10q21.3	JMJD1C	rs7916868-?	NR	1E-21		0.0097	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1080	chr10	64988930	64988931	rs7916868	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	10q21.3	JMJD1C	rs7916868-A	0.49	2E-22		0.0089	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1080	chr10	64998048	64998049	rs76519798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs76519798-C	NR	2E-9		0.0499	[0.034-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64998048	64998049	rs76519798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs76519798-C	NR	2E-11		0.0531	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr10	64998970	64998971	rs7082066	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q21.3	JMJD1C	rs7082066-A	0.1848	5E-10		0.0188	[0.013-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1080	chr10	64998970	64998971	rs7082066	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q21.3	JMJD1C	rs7082066-A	0.1848	2E-13		0.0221	[0.016-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1080	chr10	65005235	65005236	rs7077322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q21.3	JMJD1C	rs7077322-A	0.031582	1E-15		0.05368251	[0.041-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr10	65005398	65005399	rs7902343	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	10q21.3		rs7902343-C	0.528	3E-26				Affymetrix [10369434] (imputed)	N
1080	chr10	65005398	65005399	rs7902343	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs7902343-C	NR	2E-20		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	65005398	65005399	rs7902343	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs7902343-C	0.535	4E-17	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	65005398	65005399	rs7902343	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs7902343-C	NR	4E-8		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	65005398	65005399	rs7902343	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs7902343-C	0.535	1E-7	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1080	chr10	65006455	65006456	rs6479891	22354554	Thompson SD	2012-02-21	Arthritis Rheum	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	10q21.3	JMJD1C	rs6479891-T	0.14	2E-7		1.19	[1.07-1.32]	Affymetrix [561137]	N
1080	chr10	65010625	65010626	rs9415676	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q21.3	JMJD1C	rs9415676-A	0.6498	5E-9		0.0194	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1080	chr10	65010625	65010626	rs9415676	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q21.3	JMJD1C	rs9415676-A	0.6346	2E-6		0.019082	[0.011-0.027] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs10995477-C	0.467959	3E-57				Affymetrix, Illumina [24649327] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs10995477-C	0.469695	2E-55				Affymetrix, Illumina [23114412] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q21.3	NR	rs10995477-C	0.473501	3E-56		0.030415	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q21.3	JMJD1C	rs10995477-C	0.4723	9E-22		0.03441704	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	10q21.3	JMJD1C	rs10995477-C	0.4722	5E-23		0.03549842	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	10q21.3	JMJD1C	rs10995477-C	0.4723	2E-23		0.03576595	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr10	65010671	65010672	rs10995477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	10q21.3	JMJD1C	rs10995477-C	0.4722	5E-22		0.03472657	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65012749	65012750	rs4454603	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q21.3	NR	rs4454603-C	0.52	3E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix [2446094] (imputed)	N
1081	chr10	65012749	65012750	rs4454603	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q21.3	NR	rs4454603-C	0.52	5E-8				Affymetrix [2446094] (imputed)	N
1081	chr10	65016161	65016162	rs7070693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q21.3		rs7070693-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1081	chr10	65016173	65016174	rs7088799	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	10q21.3	NR	rs7088799-G		3E-7		0.0852	[0.052-0.118] SD units increase	NR [10700000] (imputed)	N
1081	chr10	65016720	65016721	rs7896910	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q21.3	NR	rs7896910-G	0.33499	3E-8		0.036897194	[0.024-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1081	chr10	65016720	65016721	rs7896910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q21.3	Intergenic	rs7896910-A	0.3141	2E-11	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1081	chr10	65016720	65016721	rs7896910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q21.3	Intergenic	rs7896910-A	0.3141	2E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1081	chr10	65016720	65016721	rs7896910	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10q21.3	NR	rs7896910-?	NR	3E-11	(CXCL5)	0.352458	[0.25-0.46] unit increase	Illumina [11901634] (imputed)	N
1081	chr10	65022021	65022022	rs12766208	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	10q21.3		rs12766208-G	NR	2E-7		0.00607488	[0.0037-0.0084] years increase	NR [7400000] (imputed)	N
1081	chr10	65022021	65022022	rs12766208	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	10q21.3		rs12766208-G	NR	4E-12		0.02461581	[0.018-0.032] years increase	NR [7400000] (imputed)	N
1081	chr10	65022765	65022766	rs80151542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs80151542-G	NR	6E-11		0.0407	[0.029-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65022765	65022766	rs80151542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs80151542-G	NR	6E-27		0.067	[0.055-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65022765	65022766	rs80151542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs80151542-G	NR	2E-17		0.0504	[0.039-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65026857	65026858	rs10995485	22890011	Frazier-Wood AC	2012-08-09	Pharmacogenet Genomics	Genome-wide association study indicates variants associated with insulin signaling and inflammation mediate lipoprotein responses to fenofibrate.	Response to fenofibrate	817 European ancestry individuals	NA	10q21.3	JMJ1C	rs10995485-G	NR	2E-6	(LDL diameter)	1.18	[0.69-1.67] unit decrease	Affymetrix [~ 2543887] (imputed)	N
1081	chr10	65027142	65027143	rs7098181	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q21.3		rs7098181-G	0.583	4E-117				Affymetrix [10369434] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL5	5,366 Icelandic ancestry individuals	NA	10q21.3		rs10761731-T	0.4418	2E-34		0.227329	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q21.3		rs10761731-A	0.578795	4E-13		0.0485564	[0.035-0.062] increase	Affymetrix [NR]	N
1081	chr10	65027609	65027610	rs10761731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q21.3		rs10761731-T	NR	2E-228		0.0617	[0.058-0.065] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	10q21.3		rs10761731-T	0.383399	3E-31		4.5087533	[3.75-5.27] unit increase	NR [NR]	N
1081	chr10	65027609	65027610	rs10761731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q21.3	JMJD1C	rs10761731-T	0.419872	7E-103		0.107139885	[0.097-0.117] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q21.3	JMJD1C	rs10761731-T	0.419837	6E-659		0.12603942	[0.12-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q21.3	NR	rs10761731-T	0.419787	3E-351		0.074458	[0.071-0.078] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	10q21.3		rs10761731-?	0.4169	2E-13		0.003541	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	10q21.3		rs10761731-?	0.4169	1E-10		0.007258	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	10q21.3		rs10761731-?	0.4169	1E-7		0.007358	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	10q21.3	NR	rs10761731-?	NR	1E-23		5.515906	[4.44-6.6] unit increase	Illumina [30743395] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	10q21.3		rs10761731-A	0.6054	7E-13		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs10761731-A	NR	1E-16		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs10761731-A	0.567	3E-14	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q21.3	JMJD1C	rs10761731-T	0.428	3E-7	(ephinephrine low 2)	0.123	[0.076-0.17] unit increase	Illumina [129094]	N
1081	chr10	65027609	65027610	rs10761731	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q21.3	JMJD1C	rs10761731-T	0.428	1E-7	(ephinephrine high 2)	0.129	[0.082-0.176] unit increase	Illumina [129094]	N
1081	chr10	65027609	65027610	rs10761731	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q21.3	JMJD1C	rs10761731-T		1E-11		0.1187	[0.085-0.153] SD units increase	NR [10700000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	10q21.3	NR	rs10761731-T		6E-10		0.1001	[0.068-0.132] SD units increase	NR [10700000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761731-T	0.4177	3E-11		0.02406048	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	10q21.3	JMJD1C	rs10761731-A	NR	2E-8				NR [2501543] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	10q21.3	RCL1	rs10761731-T	0.31	6E-8		4.81	[3.07-6.55] unit increase	Illumina [2232944] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10q21.3	JMJD1C	rs10761731-T	0.44	8E-12		0.031	[NR] mg/dL decrease	NR [NR] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761731-A	NR	2E-6		3.81	[NR] unit decrease	Illumina [476395]	N
1081	chr10	65027609	65027610	rs10761731	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	10q21.3	JMJD1C	rs10761731-T	NR	2E-24		3.849	[3.11-4.59] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1081	chr10	65027609	65027610	rs10761731	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761731-T	0.43	3E-12		2.38	[1.64-3.12] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1081	chr10	65027640	65027641	rs181771244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q21.3	JMJD1C	rs181771244-T	0.00588	3E-39		0.20055911	[0.17-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr10	65034783	65034784	rs10761733	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	NR	rs10761733-?	NR	5E-8		5.45	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1081	chr10	65038029	65038030	rs9787438	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	10q21.3	JMJD1C	rs9787438-?	NR	1E-7				Illumina [6022229] (imputed)	N
1081	chr10	65038029	65038030	rs9787438	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	10q21.3	JMJD1C	rs9787438-?	NR	9E-12	(VEGF-A)			Illumina [6022229] (imputed)	N
1081	chr10	65041853	65041854	rs34736861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs34736861-T	NR	4E-13		0.0463	[0.034-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1081	chr10	65045864	65045865	rs35506702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs35506702-C	NR	2E-9		0.0366	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65045864	65045865	rs35506702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs35506702-C	NR	4E-26		0.0646	[0.053-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65045864	65045865	rs35506702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs35506702-C	NR	2E-17		0.0494	[0.038-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	10q21.3		rs7080386-A	0.6872	2E-13		0.1404	[0.1-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	10q21.3	JMJD1C	rs7080386-?	NR	4E-8				Illumina [11329225] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q21.3	JMJD1C	rs7080386-A	0.416874	1E-21		0.047239386	[0.038-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	10q21.3		rs7080386-?	0.4138	5E-14		0.00361	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	10q21.3		rs7080386-?	0.4138	2E-10		0.007221	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	10q21.3		rs7080386-?	0.4138	1E-7		0.00733	unit decrease	NR [6200000] (imputed)	N
1081	chr10	65048305	65048306	rs7080386	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.3	JMJD1C	rs7080386-A	0.416	2E-13	(Heparin-binding EGF-like growth factor, HBEGF.14094.29.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1081	chr10	65050658	65050659	rs7075195	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	10q21.3	JMJD1C, NRBF2, REEP3	rs7075195-A	NR	3E-18		0.13	[NR] unit increase	Illumina [476395]	N
1081	chr10	65050658	65050659	rs7075195	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	10q21.3	JMJD1C	rs7075195-A	NR	2E-44		0.014	[0.012-0.016] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1081	chr10	65052204	65052205	rs10761737	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	10q21.3		rs10761737-T	0.2965	2E-13		0.1493	[0.11-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65052204	65052205	rs10761737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761737-T	0.583396	5E-13		0.0140087	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1081	chr10	65052541	65052542	rs7084707	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q21.3		rs7084707-C	0.583	3E-139				Affymetrix [10369434] (imputed)	N
1081	chr10	65056812	65056813	rs10822153	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q21.3	NR	rs10822153-A	0.47172499999999995	4E-714		0.0628103	[0.061-0.065] unit increase	Affymetrix [16582621] (imputed)	N
1081	chr10	65056812	65056813	rs10822153	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q21.3	NR	rs10822153-A	0.47172499999999995	6E-650		0.0643163	[0.062-0.067] unit increase	Affymetrix [16582614] (imputed)	N
1081	chr10	65062007	65062008	rs10761739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10q21.3		rs10761739-C	0.470206	2E-27		0.0359788	[0.029-0.042] unit increase	Illumina [13478928] (imputed)	N
1081	chr10	65062007	65062008	rs10761739	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	JMJD1C	rs10761739-C	NR	3E-15		0.023315772	[0.018-0.029] unit increase	Affymetrix [NR]	N
1081	chr10	65063843	65063844	rs61855497	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	10q21.3	JMJD1C	rs61855497-?	0.369	4E-14		0.023	[NR] fL decrease	NR [16536512] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proteinase-activated receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs10761741-T	0.41	6E-24		0.0841	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs10761741-T	0.41	3E-41		0.1118	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs10761741-T	0.41	1E-19		0.0758	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761741-T	0.4176	3E-96		0.07693902	[0.07-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761741-T	0.4182	5E-287		0.1326053	[0.13-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q21.3	NR	rs10761741-T	0.4237	7E-9		0.013062275	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1081	chr10	65066185	65066186	rs10761741	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	10q21.3	JMJD1C	rs10761741-T	0.43	3E-19		0.08	[0.062-0.098] unit increase	Affymetrix, Illumina [6705861] (imputed)	N
1081	chr10	65071214	65071215	rs10822155	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	10q21.3		rs10822155-A	0.4409	2E-12		0.13662	[0.099-0.175] unit increase	Illumina [7506463] (imputed)	N
1081	chr10	65071214	65071215	rs10822155	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Vascular endothelial growth factor levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs10822155-A	0.41	7E-13		0.0702	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65071214	65071215	rs10822155	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	10q21.3	JMJD1C	rs10822155-A	0.41581	2E-14		0.0511185	[0.038-0.064] unit decrease	Affymetrix [9463307] (imputed)	N
1081	chr10	65087467	65087468	rs7899503	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q21.3		rs7899503-?	NR	1E-7		17.2	[10.83-23.57] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1081	chr10	65087467	65087468	rs7899503	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q21.3		rs7899503-?	NR	1E-6		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1081	chr10	65087467	65087468	rs7899503	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q21.3	JMJD1C	rs7899503-C	0.38	5E-7	(Asian)	28.29	[17.29-39.29] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1081	chr10	65087467	65087468	rs7899503	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q21.3	JMJD1C	rs7899503-C	0.25	9E-14		21.16	[15.59-26.73] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1081	chr10	65091109	65091110	rs12783001	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	10q21.3	JMJD1C	rs12783001-C	0.016796666666666668	5E-6		6.8063	[3.87-9.74] unit increase	Affymetrix [NR] (imputed)	N
1081	chr10	65091158	65091159	rs10995505	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	JMJD1C	rs10995505-A	NR	1E-8		0.019748101	[0.013-0.027] unit decrease	Affymetrix [NR]	N
1081	chr10	65092718	65092719	rs117251861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs117251861-C	NR	4E-9		0.0351	[0.023-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1081	chr10	65092718	65092719	rs117251861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117251861-C	NR	9E-29		0.0663	[0.055-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1081	chr10	65096249	65096250	rs10822159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs10822159-T	0.426209	6E-382				Affymetrix, Illumina [24588908] (imputed)	N
1081	chr10	65096249	65096250	rs10822159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	10q21.3	NR	rs10822159-C	0.672128	2E-11		0.083064	[0.059-0.107] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
1081	chr10	65097398	65097399	rs537858427	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q21.3	NR	rs537858427-G	0.09997	2E-8		0.0100242	[0.0067-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
1081	chr10	65097398	65097399	rs537858427	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q21.3	NR	rs537858427-G	0.09997	1E-6		0.0099773	[0.0063-0.0136] unit increase	Affymetrix [16582965] (imputed)	N
1081	chr10	65100015	65100016	rs75446656	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	10q21.3	JMJD1C	rs75446656-?	NR	5E-7	(EA, adjusted for allergy status)			Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65100015	65100016	rs75446656	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	10q21.3	JMJD1C	rs75446656-?		4E-8	(EA, adjusted for allergy status)	0.97	[0.63-1.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65101070	65101071	rs10761745	28406950	Kim J	2017-04-13	PLoS One	Interaction of iron status with single nucleotide polymorphisms on incidence of type 2 diabetes.	Type 2 diabetes	1,895 Korean ancestry cases, 6,040 Korean ancestry controls	NA	10q21.3	JMJD1C	rs10761745-?	NR	5E-6		1.2		Affymetrix [352228]	N
1081	chr10	65101206	65101207	rs10740118	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	10q21.3	NR	rs10740118-C	0.4344	5E-25		0.0270046	[0.022-0.032] unit decrease	Affymetrix [3505788] (imputed)	N
1081	chr10	65101206	65101207	rs10740118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	10q21.3	NR	rs10740118-G	0.68943	5E-14		0.111482	[0.083-0.14] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
1081	chr10	65101206	65101207	rs10740118	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10q21.3	JMJD1C	rs10740118-C	0.419	3E-51		0.05482214	[0.048-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65101206	65101207	rs10740118	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	10q21.3	JMJD1C, NRBF2, REEP3	rs10740118-C	0.44	8E-9		0.25	[0.15-0.35] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q21.3		rs7896518-A	0.571732	7E-15		0.0317484	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBEGF	5,362 Icelandic ancestry individuals	NA	10q21.3		rs7896518-G	0.4459	9E-15		0.145309	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	10q21.3	NR	rs7896518-G	0.36881	1E-98		0.0456	[0.041-0.05] unit decrease	Affymetrix [23037915] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q21.3		rs7896518-G	0.44	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q21.3		rs7896518-G	NR	1E-12		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q21.3	NR	rs7896518-G	0.4341	3E-10				NR [9056863] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	10q21.3	REEP3	rs7896518-?	NR	4E-13		0.0517	NR L decrease	Affymetrix [9390170] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	10q21.3		rs7896518-A	0.3105	1E-17		0.0884	[0.068-0.109] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	10q21.3		rs7896518-A	0.3206	6E-14		0.0889	[0.066-0.112] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Vascular endothelial growth factor A levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	10q21.3	NR	rs7896518-A	NR	1E-13		0.0463	[0.034-0.058] unit decrease	Illumina [~ 9000000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs7896518-A	0.58	6E-39		0.1092	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 1 levels	21,758 European ancestry individuals	9,173 individuals	10q21.3		rs7896518-A	0.59	1E-17		0.0765	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q21.3	JMJD1C	rs7896518-G	0.429436	5E-25		0.023821156	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q21.3	JMJD1C	rs7896518-A	0.571984	2E-14		0.0153161	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	10q21.3	NR	rs7896518-?	NR	1E-23		5.514836	[4.43-6.6] unit increase	Illumina [30743395] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q21.3		rs7896518-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	10q21.3	JMJD1C	rs7896518-?	NR	4E-11		6.619	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	10q21.3	JMJD1C	rs7896518-?	NR	8E-7		4.926	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	10q21.3	JMJD1C	rs7896518-G	0.4277	1E-22		0.03597332	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	10q21.3	JMJD1C	rs7896518-G	0.4276	6E-21		0.03459365	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	10q21.3	JMJD1C	rs7896518-G	0.3	4E-8		4.89	[3.15-6.63] unit increase	Illumina [2232944] (imputed)	N
1081	chr10	65104499	65104500	rs7896518	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	10q21.3	JMJD1C	rs7896518-A	0.324	2E-12		5.18	[3.73-6.63] 10^9 L increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1081	chr10	65109501	65109502	rs35632171	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs35632171-G	0.0418	3E-7	(EA)	0.0915	[0.057-0.126] unit decrease	Illumina [~ 11800000] (imputed)	N
1081	chr10	65112397	65112399	rs547770310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q21.3	JMJD1C	rs547770310-C	0.533499	3E-17		0.019000145	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr10	65112397	65112399	rs547770310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q21.3	JMJD1C	rs547770310-C	0.53354	8E-17		0.01893536	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr10	65112397	65112399	rs547770310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10q21.3	JMJD1C	rs547770310-C	0.5338	1E-10		0.02342068	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65112397	65112399	rs547770310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10q21.3	JMJD1C	rs547770310-C	0.5337	4E-14		0.02751534	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr10	65115663	65115664	rs113262551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs113262551-C	NR	2E-15		0.06	[0.045-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr10	65118202	65118203	rs10822161	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs10822161-?	NR	1E-22		0.04283	[0.034-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1081	chr10	65121484	65121485	rs12358789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	10q21.3		rs12358789-A	0.560589	7E-9		0.0246671	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1081	chr10	65121564	65121565	rs12355784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q21.3	NR	rs12355784-C	0.524965	2E-688		0.10801	[0.1-0.11] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1081	chr10	65121564	65121565	rs12355784	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q21.3	JMJD1C	rs12355784-A	0.48	5E-10	(ALP)	0.03	[0.017-0.033] U/L increase	Affymetrix, Illumina [up to 496032]	N
1081	chr10	65124097	65124098	rs10822163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q21.3		rs10822163-C	0.525577	7E-20		0.0360848	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1081	chr10	65124097	65124098	rs10822163	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q21.3	JMJD1C	rs10822163-C	0.526626	2E-57		0.0318329	[0.028-0.036] unit increase	Affymetrix [NR] (imputed)	N
1081	chr10	65124097	65124098	rs10822163	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q21.3	NR	rs10822163-G	0.472515	4E-955		0.0533569	[0.052-0.055] unit increase	Affymetrix [16582909] (imputed)	N
1081	chr10	65124097	65124098	rs10822163	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q21.3	NR	rs10822163-G	0.472515	1E-827		0.0555146	[0.054-0.057] unit increase	Affymetrix [16582965] (imputed)	N
1081	chr10	65126831	65126832	rs6479896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q21.3		rs6479896-T	0.525486	1E-19		0.0363177	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1081	chr10	65127475	65127476	rs117589535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117589535-C	NR	3E-23		0.0748	[0.06-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1081	chr10	65127475	65127476	rs117589535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs117589535-C	NR	9E-15		0.0557	[0.042-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1081	chr10	65128618	65128619	rs10761750	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q21.3	NR	rs10761750-G		9E-8		0.0903	[0.057-0.123] SD units decrease	NR [10700000] (imputed)	N
1081	chr10	65133155	65133156	rs2393967	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q21.3	NR	rs2393967-A	NR	3E-10		6.315	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1081	chr10	65133155	65133156	rs2393967	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10q21.3	NR	rs2393967-?	NR	3E-11	(CXCL5)	0.352267	[0.25-0.46] unit increase	Illumina [11901634] (imputed)	N
1081	chr10	65133155	65133156	rs2393967	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	10q21.3	NR	rs2393967-C		7E-8		0.0925	[0.059-0.126] SD units increase	NR [10700000] (imputed)	N
1081	chr10	65133155	65133156	rs2393967	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q21.3	NR	rs2393967-?		8E-9	(CXCL5)	0.161	[NR] unit increase	Illumina [NR]	N
1081	chr10	65133155	65133156	rs2393967	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	CXCL5 levels	up to 653 individuals	up to 317 individuals	10q21.3	JMJD1C	rs2393967-C	0.36933	5E-8		0.3	[0.2-0.4] unit increase	Illumina [4840842] (imputed)	N
1081	chr10	65133155	65133156	rs2393967	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	10q21.3	JMJD1C	rs2393967-A	NR	3E-21		0.01	[0.01-0.018] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1081	chr10	65133821	65133822	rs7923609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	10q21.3		rs7923609-G	0.473731	2E-27		0.0420279	[0.034-0.05] unit increase	Illumina [13474352] (imputed)	N
1081	chr10	65133821	65133822	rs7923609	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs7923609-?		1E-36		0.0501	[0.042-0.058] unit increase	Illumina [31500000] (imputed)	N
1081	chr10	65133821	65133822	rs7923609	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	10q21.3	JMJD1C, REEP3	rs7923609-A	0.521	1E-6		0.021	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1081	chr10	65133821	65133822	rs7923609	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	10q21.3	JMJD1C, NRBF2	rs7923609-G	0.50	6E-23		2.2	[1.70-2.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1081	chr10	65134777	65134778	rs2893919	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	10q21.3	NR	rs2893919-A	0.4446	3E-23				Affymetrix, Illumina [at least 2500000] (imputed)	N
1081	chr10	65138909	65138910	rs7910927	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	JMJD1C	rs7910927-T	0.51	6E-35	(Men + Women)	0.048	[0.040-0.056] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1081	chr10	65138909	65138910	rs7910927	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	JMJD1C	rs7910927-T	0.51	2E-13	(Women)	0.046	[0.034-0.058] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1081	chr10	65138909	65138910	rs7910927	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	10q21.3	JMJD1C	rs7910927-T	0.51	1E-25	(Men)	0.05	[0.041-0.059] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1081	chr10	65139865	65139865	rs753525368	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q21.3		rs753525368-AT	0.48503	5E-16		0.0351118	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1081	chr10	65139865	65139865	rs753525368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	10q21.3	NR	rs753525368-?	0.454125	2E-13		0.118776	[0.087-0.15] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1081	chr10	65140439	65140440	rs2393969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q21.3	JMJD1C	rs2393969-C	0.471099	3E-38		0.028660469	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65149088	65149089	rs9414801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	10q21.3		rs9414801-G	0.471394	2E-18		0.0360568	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1082	chr10	65149088	65149089	rs9414801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q21.3		rs9414801-A	NR	3E-310		0.088	[0.083-0.093] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1082	chr10	65149088	65149089	rs9414801	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	10q21.3	REEP3	rs9414801-?	NR	1E-9		0.005539	[0.0034-0.0077] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1082	chr10	65150338	65150341	rs143067378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	10q21.3		rs143067378-T	0.6947	3E-9		0.026015	[0.017-0.035] unit decrease	Illumina [13471903] (imputed)	N
1082	chr10	65150958	65150959	rs7095571	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs7095571-T	0.525659	1E-19		0.0361012	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1082	chr10	65151268	65151268	rs149727843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q21.3	JMJD1C	rs149727843-TCAA	0.596393	3E-9		0.013662728	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65154884	65154885	rs10761751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q21.3		rs10761751-?	NR	4E-56				NR [~ 8900000] (imputed)	N
1082	chr10	65159579	65159580	rs4745706	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	JMJD1C	rs4745706-T	NR	6E-13		0.029892288	[0.022-0.038] unit increase	Affymetrix [NR]	N
1082	chr10	65160320	65160321	rs10761752	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761752-T	0.525582	7E-21		0.0372663	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1082	chr10	65160320	65160321	rs10761752	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761752-T	0.525582	8E-21		0.0371764	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1082	chr10	65160320	65160321	rs10761752	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	10q21.3		rs10761752-T	0.525582	3E-20		0.036561	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
1082	chr10	65160320	65160321	rs10761752	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761752-T	0.525582	2E-17		0.033836	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1082	chr10	65160320	65160321	rs10761752	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761752-T	0.525582	3E-19		0.0356568	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
1082	chr10	65161902	65161903	rs10761753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10761753-G	0.526318	1E-13		0.0304322	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65161902	65161903	rs10761753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q21.3		rs10761753-G	0.526318	6E-43		0.0539741	[0.046-0.062] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65161902	65161903	rs10761753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q21.3	JMJD1C	rs10761753-A	0.473985	1E-9		0.02962804	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65161902	65161903	rs10761753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q21.3	JMJD1C	rs10761753-A	0.47401	1E-10		0.03164698	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65162152	65162153	rs7896783	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	10q21.3	JMJD1C	rs7896783-A	0.48	9E-22	(EA)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525636	2E-27		0.0422791	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525636	2E-23		0.0393254	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525768	1E-22		0.0386617	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525636	3E-27		0.0418776	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525768	5E-22		0.0381204	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10822168-G	0.525636	3E-27		0.041967	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65165183	65165184	rs10822168	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	10q21.3	JMJD1C	rs10822168-?	NR	3E-11		0.02888	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1082	chr10	65166369	65166369	rs34453858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q21.3	JMJD1C	rs34453858-GTA	0.783634	4E-9		0.015863145	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr10	65166669	65166670	rs17813747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q21.3	NR	rs17813747-C	NR	2E-10		0.024	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65166669	65166670	rs17813747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs17813747-C	NR	1E-13		0.029	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65166669	65166670	rs17813747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs17813747-C	NR	4E-47		0.0566	[0.049-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65166669	65166670	rs17813747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs17813747-C	NR	1E-30		0.0431	[0.036-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65172327	65172328	rs10761756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q21.3		rs10761756-T	NR	8E-63		0.0329	[0.029-0.037] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1082	chr10	65172327	65172328	rs10761756	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q21.3	JMJD1C	rs10761756-?	NR	1E-9		0.0157	[0.011-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1082	chr10	65172327	65172328	rs10761756	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		10q21.3	JMJD1C	rs10761756-?	NR	5E-20		0.0093	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1082	chr10	65174576	65174577	rs61853587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q21.3	Intergenic	rs61853587-C	0.1436	3E-11	(MTAG)	0.0217	[0.015-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	6E-38		0.0504604	[0.043-0.058] unit increase	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	3E-26		0.042358	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	2E-18		0.0355129	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	5E-17		0.0337335	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	1E-30		0.0458033	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	9E-19		0.0353601	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	9E-42		0.0526145	[0.045-0.06] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	1E-32		0.048065	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	4E-40		0.0518457	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	6E-29		0.0448925	[0.037-0.053] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65176105	65176105	rs10640079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q21.3		rs10640079-G	0.525277	5E-35		0.0497189	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65179151	65179152	rs10761760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	10q21.3		rs10761760-C	0.469906	5E-14		0.0286874	[0.021-0.036] unit decrease	Illumina [13476323] (imputed)	N
1082	chr10	65179151	65179152	rs10761760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	10q21.3	NR	rs10761760-A	0.552396	1E-29		0.043851	[0.036-0.051] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1082	chr10	65179157	65179158	rs10761761	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	10q21.3		rs10761761-T	0.4	2E-8		0.026	L increase	Affymetrix [NR] (imputed)	N
1082	chr10	65180775	65180776	rs6479901	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	JMJD1C	rs6479901-A	NR	5E-12		0.025329128	[0.018-0.033] unit increase	Affymetrix [NR]	N
1082	chr10	65180884	65180885	rs7077580	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	10q21.3	JMJD1C	rs7077580-?	NR	5E-17		0.01636	[0.012-0.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1082	chr10	65182255	65182256	rs7923544	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	10q21.3	JMJD1C	rs7923544-?	NR	2E-16		0.01643	[0.012-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1082	chr10	65188972	65188973	rs10761765	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	JMJD1C	rs10761765-A	NR	8E-9		5.761	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	2E-26		0.040786	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	3E-20		0.0366406	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	5E-28		0.0433983	[0.036-0.051] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	4E-21		0.0374032	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	2E-30		0.0453884	[0.038-0.053] unit increase	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	4E-30		0.045521	[0.038-0.053] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495759	4E-12		0.0271239	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495759	1E-21		0.0378444	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	1E-18		0.0346448	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495782	2E-31		0.0456046	[0.038-0.053] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495759	1E-8		0.0226931	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495759	1E-10		0.0253421	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	10q21.3		rs7924036-G	0.495759	4E-26		0.0407127	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q21.3		rs7924036-T	0.4851	5E-8		39.567413	z score increase	NR [6814003]	N
1082	chr10	65191644	65191645	rs7924036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q21.3		rs7924036-T	NR	4E-52		0.0311	[0.027-0.035] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q21.3		rs7924036-T	NR	5E-37		0.0273	[0.023-0.031] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q21.3		rs7924036-G	0.496	5E-16				Affymetrix [10369434] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10q21.3	JMJD1C	rs7924036-G	NR	1E-13		0.0093097	[0.0069-0.0118] unit decrease	Affymetrix [10061374] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q21.3	JMJD1C	rs7924036-G	0.49667	2E-12		0.0096342	[0.0069-0.0123] unit increase	Affymetrix [12370749]	N
1082	chr10	65191644	65191645	rs7924036	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	10q21.3	JMJD1C	rs7924036-?	NR	4E-10				NR [3144808] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q21.3	JMJD1C	rs7924036-T	0.4963	1E-12		0.014335184	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.3	NR	rs7924036-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	10q21.3	LINC01415	rs7924036-G	0.49654	2E-11	(EA)	0.00833585	[0.0059-0.0108] unit increase	Affymetrix [~ 8800000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.3		rs7924036-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs7924036-T	0.5124	3E-21		0.0133	[0.011-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs7924036-T	0.5124	5E-22	(MTAG)	0.0126	[0.01-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1082	chr10	65191644	65191645	rs7924036	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q21.3	NR	rs7924036-T	NR	2E-8		5.598	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q21.3		rs3999089-G	NR	1E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q21.3	JMJD1C	rs3999089-?	NR	6E-35		0.0324	[0.028-0.037] unit decrease	Affymetrix [5701386] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs3999089-A	NR	2E-23		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs3999089-A	0.513	2E-20	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs3999089-A	NR	4E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1082	chr10	65203807	65203808	rs3999089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q21.3	NR	rs3999089-A	0.513	7E-7	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1082	chr10	65212825	65212826	rs186167801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q21.3	JMJD1C	rs186167801-T	0.00600000000000001	8E-36		0.18858728	[0.16-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65214348	65214349	rs10995538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q21.3		rs10995538-C	0.945	1E-21				Affymetrix [10369434] (imputed)	N
1082	chr10	65218491	65218491	rs71463523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q21.3	JMJD1C	rs71463523-ATTTAT	0.176697	2E-10		0.01872929	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr10	65224200	65224200	rs35290825	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs35290825-G	0.526462	4E-25		0.0407803	[0.033-0.048] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65224458	65224459	rs55739257	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	10q21.3	JMJD1C	rs55739257-C	0.5183	2E-10		0.02296428	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1082	chr10	65235692	65235693	rs72837044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs72837044-C	NR	5E-13		0.0671	[0.049-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65245493	65245494	rs116999194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs116999194-A	NR	4E-10		0.0504	[0.035-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65245493	65245494	rs116999194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs116999194-A	NR	5E-10		0.0478	[0.033-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr10	65246446	65246447	rs7085862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q21.3		rs7085862-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1082	chr10	65250542	65250543	rs10740128	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.3	Intergenic	rs10740128-A	0.1924	9E-12	(MTAG)	0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1082	chr10	65255514	65255514	rs538711822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	10q21.3		rs538711822-C	0.557557	1E-13		0.0303085	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1082	chr10	65255514	65255514	rs538711822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	10q21.3		rs538711822-C	0.557557	7E-9		0.0235542	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1082	chr10	65255514	65255514	rs538711822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q21.3	NR	rs538711822-CA	NR	4E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65255515	65255515	rs34098324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q21.3		rs34098324-CA	NR	1E-8		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1082	chr10	65257362	65257363	rs34044188	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	10q21.3	NR	rs34044188-?	NR	9E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1082	chr10	65257362	65257363	rs34044188	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs34044188-T	0.0373	3E-7	(EA)	0.0953	[0.059-0.132] unit decrease	Illumina [~ 11800000] (imputed)	N
1082	chr10	65259832	65259833	rs61853632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs61853632-A	NR	8E-18		0.0608	[0.047-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65259832	65259833	rs61853632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs61853632-A	NR	7E-15		0.0524	[0.039-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65261176	65261177	rs34524635	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q21.3	NR	rs34524635-C		1E-7		0.0899	[0.057-0.123] SD units increase	NR [10700000] (imputed)	N
1082	chr10	65261183	65261184	rs2893923	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	10q21.3	NR	rs2893923-C		7E-8		0.0925	[0.059-0.126] SD units decrease	NR [10700000] (imputed)	N
1082	chr10	65261183	65261184	rs2893923	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q21.3	JMJD1C	rs2893923-T	0.336	5E-8	(epinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1082	chr10	65262684	65262685	rs12785227	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	10q21.3	REEP3	rs12785227-A	0.685798	7E-9		0.014549	[0.0096-0.0195] unit increase	Affymetrix [19400838] (imputed)	N
1082	chr10	65265639	65265640	rs116963410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs116963410-C	NR	1E-13		0.0613	[0.045-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65265639	65265640	rs116963410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs116963410-C	NR	1E-10		0.0506	[0.035-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	REEP3	rs10740131-A	0.525464	9E-9	(2 ms)	0.0323318	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	REEP3	rs10740131-A	0.525464	3E-8	(-4 ms)	0.0318227	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	REEP3	rs10740131-A	0.525464	2E-8	(4 ms)	0.0312716	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	REEP3	rs10740131-A	0.525464	1E-8	(0 ms)	0.0326737	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	REEP3	rs10740131-A	0.525464	1E-8	(-2 ms)	0.0326377	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q21.3	NR	rs10740131-T	0.473013	3E-196		0.0380455	[0.036-0.041] unit increase	Affymetrix [16578495] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q21.3	NR	rs10740131-T	0.47315799999999997	2E-25		0.0283387	[0.023-0.034] unit increase	Affymetrix [16580851] (imputed)	N
1082	chr10	65271487	65271488	rs10740131	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	10q21.3	NR	rs10740131-T		8E-6		0.0727	[0.041-0.104] SD units increase	NR [10700000] (imputed)	N
1082	chr10	65273781	65273782	rs10761778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q21.3		rs10761778-G	NR	2E-35		0.0242	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1083	chr10	65274926	65274927	rs10761779	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	10q21.3		rs10761779-G	0.49	1E-8		3.85	[2.54-5.16] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1083	chr10	65274926	65274927	rs10761779	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q21.3	JMJD1C	rs10761779-G	0.501	3E-6	(ephinephrine low 2)	0.113	[0.066-0.16] unit increase	Illumina [129094]	N
1083	chr10	65274926	65274927	rs10761779	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q21.3	JMJD1C	rs10761779-G	0.5	2E-6	(ephinephrinehigh 2)	0.115	[0.068-0.162] unit increase	Illumina [129094]	N
1083	chr10	65274926	65274927	rs10761779	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q21.3	REEP3	rs10761779-G	0.49	7E-10	(ALP)	0.03	[0.017-0.033] U/L increase	Affymetrix, Illumina [up to 496032]	N
1083	chr10	65275213	65275214	rs117212080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q21.3	NR	rs117212080-C	NR	6E-17		0.0474	[0.036-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr10	65275213	65275214	rs117212080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117212080-C	NR	1E-60		0.0929	[0.082-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr10	65275213	65275214	rs117212080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs117212080-C	NR	1E-47		0.078	[0.067-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr10	65275994	65275995	rs60981167	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	10q21.3	NR	rs60981167-?	NR	2E-11	(CXCL5)	0.366015	[0.26-0.47] unit increase	Illumina [11901634] (imputed)	N
1083	chr10	65276944	65276945	rs7082076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	10q21.3		rs7082076-G	0.710848322	9E-10		0.10511321	[0.072-0.139] unit increase	Illumina [13429768] (imputed)	N
1083	chr10	65277025	65277026	rs7082470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs7082470-G	0.527114	1E-24		0.0417898	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65277025	65277026	rs7082470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q21.3		rs7082470-G	0.527107	3E-16		0.0331005	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65277025	65277026	rs7082470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q21.3	REEP3	rs7082470-A	0.471347	4E-36		0.027770743	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr10	65277025	65277026	rs7082470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q21.3	REEP3	rs7082470-A	0.471348	3E-17		0.018828047	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr10	65277025	65277026	rs7082470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q21.3	NR	rs7082470-A	0.474125	6E-56		0.029017	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1083	chr10	65277082	65277083	rs4745729	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q21.3	REEP3	rs4745729-G	0.1448	2E-10		0.018272001	[0.013-0.024] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1083	chr10	65277255	65277256	rs78023800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs78023800-G	NR	4E-11		0.0573	[0.04-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr10	65280993	65280994	rs7075901	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q21.3		rs7075901-C	0.527141	4E-25		0.0410684	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290255	rs5785580	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q21.3	REEP3	rs5785580-?	0.4678	1E-26		0.0291	[0.024-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493605	2E-15		0.0308674	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	3E-15		0.0309477	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	1E-8		0.0226519	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	1E-10		0.024039	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	9E-9		0.0208767	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	1E-21		0.0385508	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	9E-11		0.0241613	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	4E-8		0.0199615	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	4E-12		0.0283809	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	7E-10		0.0226697	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	5E-10		0.0225413	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	3E-9		0.0221131	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	2E-8		0.0203567	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	7E-11		0.024254	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	1E-9		0.0221506	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	3E-12		0.0261123	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	1E-9		0.0222206	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65290254	65290254	rs764353259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	10q21.3		rs764353259-AT	0.493632	3E-8		0.0202414	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65295109	65295110	rs10995554	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q21.3		rs10995554-G	0.34	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1083	chr10	65295109	65295110	rs10995554	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q21.3	NR	rs10995554-G	0.3517	8E-10				NR [9056863] (imputed)	N
1083	chr10	65301724	65301725	rs7897379	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	10q21.3		rs7897379-T	0.5536	3E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1083	chr10	65301724	65301725	rs7897379	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	10q21.3		rs7897379-T	0.5485	2E-10		0.0066	[0.0046-0.0086] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1083	chr10	65301724	65301725	rs7897379	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q21.3	REEP3	rs7897379-C	0.48	9E-12	(Lysosomal protective protein, CTSA.3179.51.2)	0.17	[0.11-0.23] unit increase	Affymetrix [10572788] (imputed)	N
1083	chr10	65301724	65301725	rs7897379	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	10q21.3	JMJD1C	rs7897379-T	0.532	3E-19	(Trans-ethnic initial)	0.0274	[0.021-0.034] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1083	chr10	65301841	65301845	rs748386792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q21.3		rs748386792-G	0.53029	2E-11		0.0263393	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65301841	65301845	rs748386792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q21.3		rs748386792-G	0.53029	4E-17		0.0330586	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65302698	65302699	rs12257409	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	10q21.3	REEP3	rs12257409-C	0.652016	3E-11		1.0308518	NR	Affymetrix [~ 9600000] (imputed)	N
1083	chr10	65302921	65302922	rs11592315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q21.3		rs11592315-A	0.967	4E-14				Affymetrix [10369434] (imputed)	N
1083	chr10	65305251	65305252	rs12263348	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q21.3	NR	rs12263348-C	0.6615	8E-9		0.0282	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1083	chr10	65308749	65308750	rs10761784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPD1	5,368 Icelandic ancestry individuals	NA	10q21.3		rs10761784-A	0.4764	2E-14		0.141475	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1083	chr10	65308749	65308750	rs10761784	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA	10q21.3	REEP3	rs10761784-A	0.53	4E-9		0.011	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1083	chr10	65308749	65308750	rs10761784	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	10q21.3	REEP3	rs10761784-A	0.53	7E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1083	chr10	65308749	65308750	rs10761784	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	10q21.3	REEP3	rs10761784-A	0.51	1E-9	(EA)	0.014	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1083	chr10	65313818	65313819	rs9919429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q21.3		rs9919429-G	NR	7E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1083	chr10	65314710	65314711	rs2163188	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q21.3	NR	rs2163188-G	NR	4E-8		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1083	chr10	65314710	65314711	rs2163188	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q21.3	REEP3	rs2163188-C	0.5	2E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
1083	chr10	65315396	65315397	rs12411988	22354554	Thompson SD	2012-02-21	Arthritis Rheum	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	10q21.3	REEP3	rs12411988-C	0.13	3E-7		1.18	[1.06-1.31]	Affymetrix [561137]	N
1083	chr10	65315432	65315433	rs10740134	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	10q21.3	REEP3	rs10740134-T	0.515	1E-12		0.038	[0.026-0.05] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1083	chr10	65315799	65315800	rs7919685	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q21.3	REEP3	rs7919685-G	0.53	5E-16		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1083	chr10	65315799	65315800	rs7919685	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q21.3	REEP3	rs7919685-G	0.52	2E-14	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1083	chr10	65316235	65316235	rs757523221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q21.3		rs757523221-TACTC,rs757523221-TACTC	0.51493	1E-8		0.0235111	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1083	chr10	65316235	65316235	rs757523221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q21.3		rs757523221-TACTC,rs757523221-TACTC	0.51493	1E-8		0.0235111	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1083	chr10	65317044	65317045	rs12247907	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q21.3		rs12247907-C	0.5019	2E-7		36.976624	z score increase	NR [6814003]	N
1083	chr10	65318765	65318766	rs10761785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q21.3		rs10761785-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1083	chr10	65318765	65318766	rs10761785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q21.3	NA	rs10761785-T	0.5135	6E-18		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr10	65318765	65318766	rs10761785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q21.3	NR	rs10761785-T	0.5135	6E-18		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr10	65318765	65318766	rs10761785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q21.3	NA	rs10761785-T	0.5136	3E-16		0.0133	[0.01-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr10	65318765	65318766	rs10761785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q21.3	NA	rs10761785-T	0.5136	3E-16		0.0133	[0.01-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr10	65318765	65318766	rs10761785	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q21.3	REEP3	rs10761785-G	0.486	3E-6	(EA, women)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1083	chr10	65318765	65318766	rs10761785	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	10q21.3	JMJD1C, NRBF2, REEP3	rs10761785-T	0.498	7E-7		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr10	65320005	65320006	rs2393986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	10q21.3		rs2393986-A	0.520313	4E-11		0.0262631	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1083	chr10	65320729	65320730	rs11812934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	NR	rs11812934-?	NR	9E-8		5.338	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1083	chr10	65321146	65321147	rs12245149	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q21.3		rs12245149-A	0.49	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
1083	chr10	65321146	65321147	rs12245149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	REEP3	rs12245149-A	NR	8E-11		0.0183632	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1083	chr10	65321146	65321147	rs12245149	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	10q21.3		rs12245149-C		7E-7		1.11	[1.07-1.16]	NR [2286360] (imputed)	N
1083	chr10	65321146	65321147	rs12245149	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q21.3	REEP3, NRBF2	rs12245149-C	0.526	2E-12		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1083	chr10	65321463	65321464	rs12245367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	10q21.3		rs12245367-T	NR	8E-18		0.0713	[0.055-0.088] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1083	chr10	65321463	65321464	rs12245367	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	10q21.3		rs12245367-T	0.470138414490477	7E-6		0.0192296	[0.011-0.028] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1083	chr10	65321463	65321464	rs12245367	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	10q21.3		rs12245367-T	0.470138414490477	7E-7	(EA)	0.0241976	[0.015-0.034] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1083	chr10	65325477	65325478	rs10822182	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q21.3	NR	rs10822182-?		5E-7	(VEGFA)	0.1212	[NR] unit decrease	Illumina [NR]	N
1083	chr10	65325477	65325478	rs10822182	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q21.3	NR	rs10822182-?		1E-8	(CXCL5)	0.1736	[NR] unit decrease	Illumina [NR]	N
1083	chr10	65330649	65330650	rs4745748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q21.3	REEP3	rs4745748-C	0.9695922	1E-9		0.040364105	[0.027-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr10	65333647	65333648	rs6479908	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.3	REEP3	rs6479908-C		1E-9		0.142	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1083	chr10	65335314	65335315	rs7090758	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q21.3	REEP3	rs7090758-T	0.526135	2E-8		0.0118111	[0.0077-0.0159] unit increase	Affymetrix [NR] (imputed)	N
1083	chr10	65336184	65336185	rs7077256	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	REEP3	rs7077256-A	NR	5E-11		0.019172957	[0.013-0.025] unit increase	Affymetrix [NR]	N
1083	chr10	65337152	65337153	rs10822184	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	10q21.3	JMJD1C	rs10822184-T	0.49	1E-8	(serum testosterone)	0.058	[0.038-0.078] unit decrease	Illumina [642461]	N
1083	chr10	65344190	65344190	rs71463528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	10q21.3		rs71463528-T	0.50256	2E-16		0.0333475	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1083	chr10	65350382	65350383	rs10822186	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q21.3	REEP3	rs10822186-G	0.49	6E-192		29.6	z-score increase	Affymetrix [4311822] (imputed)	N
1083	chr10	65356108	65356109	rs1864390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q21.3		rs1864390-T	NR	5E-11		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1083	chr10	65363165	65363166	rs10995566	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	10q21.3	NRBF2, JMJD1C, REEP3	rs10995566-T	0.316	9E-8			NR	Illumina [7289516] (imputed)	N
1083	chr10	65363165	65363166	rs10995566	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	10q21.3	NRBF2, JMJD1C, REEP3	rs10995566-T	0.316	5E-8		0.72	[0.64-0.81]	Illumina [7289516] (imputed)	N
1083	chr10	65365384	65365385	rs1896995	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	10q21.3	REEP3	rs1896995-?	NR	5E-21		0.04105	[0.033-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1083	chr10	65365384	65365385	rs1896995	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q21.3	REEP3	rs1896995-T	NR	3E-8		0.017029727	[0.011-0.023] unit increase	Affymetrix [NR]	N
1083	chr10	65378694	65378695	rs72840204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs72840204-T	NR	2E-10		0.0472	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr10	65378805	65378806	rs10465964	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs10465964-C	0.01045	3E-37	(IGHG4)	0.5694	NR unit increase	Illumina [1671387] (imputed)	N
1083	chr10	65381280	65381281	rs41274082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs41274082-T	NR	4E-13		0.0534	[0.039-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr10	65381593	65381594	rs7093334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs7093334-C	NR	1E-34		0.0886	[0.074-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr10	65381593	65381594	rs7093334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs7093334-C	NR	2E-17		0.0584	[0.045-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr10	65400079	65400080	rs3858122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	MRPL35P2	rs3858122-C	NR	8E-9		0.0164435	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1084	chr10	65406486	65406487	rs75941567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs75941567-G	NR	5E-21		0.0503	[0.04-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65406486	65406487	rs75941567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs75941567-G	NR	9E-15		0.0395	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65413713	65413714	rs11599663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs11599663-A	NR	8E-18		0.0553	[0.043-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1084	chr10	65421441	65421442	rs141319505	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	10q21.3	Intergenic	rs141319505-A	0.98	4E-6		1.308	[NR]	Illumina [9112387] (imputed)	N
1084	chr10	65422623	65422624	rs2928092	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	NR	rs2928092-?	NR	2E-6		4.764	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1084	chr10	65426784	65426785	rs36080042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs36080042-A	NR	3E-24		0.0607	[0.049-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65426784	65426785	rs36080042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs36080042-A	NR	7E-19		0.0505	[0.039-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65426784	65426785	rs36080042	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	10q21.3	REEP3	rs36080042-?	NR	1E-7	(EA, adjusted for allergy status)			Affymetrix, Illumina [NR] (imputed)	N
1084	chr10	65426784	65426785	rs36080042	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	10q21.3	REEP3	rs36080042-?		5E-8	(EA, adjusted for allergy status)	0.964	[0.62-1.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1084	chr10	65429737	65429738	rs10995578	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q21.3	REEP3	rs10995578-G	0.534951	2E-58		0.00366014	[0.0032-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1084	chr10	65437154	65437155	rs10509190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs10509190-G	NR	9E-10		0.0549	[0.037-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1084	chr10	65441035	65441036	rs16918779	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.3	NR	rs16918779-?	NR	2E-6				Affymetrix [NR]	N
1084	chr10	65456767	65456768	rs1272351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q21.3		rs1272351-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1084	chr10	65477889	65477890	rs117400152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs117400152-T	NR	8E-18		0.0792	[0.061-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65477889	65477890	rs117400152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs117400152-T	NR	3E-9		0.0521	[0.035-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65483261	65483262	rs1262217	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q21.3	NR	rs1262217-A	0.8256	9E-12		0.001964	[0.0014-0.0025] unit increase	Affymetrix [NR] (imputed)	N
1084	chr10	65483261	65483262	rs1262217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	10q21.3	NR	rs1262217-A	NR	2E-10		0.0211	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr10	65494035	65494036	rs11591870	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs11591870-T	0.798	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1084	chr10	65497265	65497266	rs4082330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q21.3		rs4082330-T	NR	1E-10		0.0208	[0.015-0.027] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1084	chr10	65505611	65505612	rs75826929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	10q21.3		rs75826929-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1084	chr10	65516175	65516176	rs10995614	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	10q21.3	NR	rs10995614-C		6E-6		0.1558	[0.089-0.223] SD units increase	NR [10700000] (imputed)	N
1084	chr10	65519753	65519754	rs10740140	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.3	Intergenic	rs10740140-A	0.4183	4E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1084	chr10	65523106	65523107	rs61372148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q21.3	Intergenic	rs61372148-T	0.4041	7E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr10	65541337	65541338	rs61854105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs61854105-A	NR	9E-11		0.0381	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1085	chr10	65558250	65558251	rs61854130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs61854130-A	0.3972	4E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr10	65558250	65558251	rs61854130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q21.3	Intergenic	rs61854130-A	0.3911	2E-9	(MTAG)	0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr10	65573194	65573195	rs10995639	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs10995639-T	0.4199	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1085	chr10	65597701	65597702	rs1880067	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	NR	rs1880067-?	NR	5E-6		4.579	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1085	chr10	65601060	65601061	rs10822220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q21.3		rs10822220-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1085	chr10	65653463	65653464	rs117759893	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC022387.1	rs117759893-?	NR	3E-12	(male)	6.03612	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr10	65658743	65658744	rs938036	24172245	Haga S	2013-10-31	J Hum Genet	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (mandibular third molar)	80 East Asian ancestry mandibular cases, 69 East Asian ancestry maxillary cases, 338 East Asian ancestry controls	NA	10q21.3	intergenic	rs938036-T		8E-6		2.88	[1.81-4.59]	Illumina [532105]	N
1086	chr10	65694771	65694772	rs1916463	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q21.3	NR	rs1916463-A	NR	3E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1086	chr10	65694771	65694772	rs1916463	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q21.3	NR	rs1916463-A	NR	8E-14		0.025	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1086	chr10	65732497	65732498	rs2671540	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q21.3	intergenic	rs2671540-T	0.359	4E-6		0.031	[0.017-0.045] unit increase	Affymetrix [7947838] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	6E-15				NR [NR] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	4E-12		0.9	[0.47-1.33] unit decrease	NR [NR] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	2E-9				NR [NR] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	2E-8		2.59	[1.69-3.49] unit increase	NR [NR] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	2E-17				NR [NR] (imputed)	N
1086	chr10	65771350	65771351	rs148528269	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q21.3		rs148528269-T	0.99	2E-15		3.76	[2.84-4.68] unit increase	NR [NR] (imputed)	N
1087	chr10	65803369	65803370	rs2252686	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q21.3	Intergenic	rs2252686-T	0.1649	2E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1087	chr10	65809251	65809252	rs113627054	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	10q21.3	NR	rs113627054-T	0.9895	2E-9		4.1199	[2.78-5.46] unit decrease	Affymetrix, Illumina [12989038] (imputed)	N
1087	chr10	65811178	65811179	rs565520641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs565520641-A	0.01045	6E-9	(RNPEP)	0.1267	NR unit increase	Illumina [1671387] (imputed)	N
1087	chr10	65811178	65811179	rs565520641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs565520641-A	0.01045	2E-8	(TAGLN2)	0.4137	NR unit increase	Illumina [1671387] (imputed)	N
1087	chr10	65811178	65811179	rs565520641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs565520641-A	0.01045	2E-8	(GARS)	0.04262	NR unit increase	Illumina [1671387] (imputed)	N
1087	chr10	65820797	65820798	rs2601701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q21.3	Intergenic	rs2601701-A	0.1622	3E-12	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr10	65820797	65820798	rs2601701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.3	Intergenic	rs2601701-A	0.1617	1E-13	(MTAG)	0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr10	65820797	65820798	rs2601701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs2601701-A	0.1614	1E-9	(MTAG)	0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr10	65963248	65963249	rs6479970	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	JMJD1C	rs6479970-?	NR	9E-6	(CE 16:1)	0.22279769	[0.12-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1088	chr10	65966634	65966635	rs73304446	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10q21.3	Intergenic	rs73304446-G	NR	7E-6		0.26571	[0.15-0.38] unit decrease	Illumina [13520550] (imputed)	N
1088	chr10	66019738	66019739	rs10995853	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	10q21.3	NR	rs10995853-?	NR	9E-7	(EA)	1.6	unit decrease	Illumina [at least 4700000] (imputed)	N
1089	chr10	66174553	66174554	rs34131245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q21.3	NR	rs34131245-C	0.906059	3E-8		0.0295835	[0.019-0.04] unit increase	Affymetrix [16577313] (imputed)	N
1090	chr10	66313978	66313979	rs72805949	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	10q21.3		rs72805949-G	0.1042	1E-7		1.429	[1.252-1.631]	Affymetrix [7975321] (imputed)	N
1091	chr10	66380116	66380117	rs748701	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	10q21.3		rs748701-C	0.21	5E-6		0.63	unit decrease	Affymetrix [NR] (imputed)	N
1091	chr10	66448471	66448472	rs7900909	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	10q21.3	ANXA2P3, LOC645084, RPL7AP1	rs7900909-C	0.15	8E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
1092	chr10	66469426	66469427	rs61857860	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.3		rs61857860-C	0.739	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1092	chr10	66483583	66483584	rs10995995	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	10q21.3		rs10995995-G	NR	2E-6	10	1.08	unit decrease	Illumina [487523]	N
1092	chr10	66485071	66485072	rs16920206	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	8,107 Asian ancestry individuals	NA	10q21.3	REEP3	rs16920206-T	0.9397	9E-9		9.4663	[6.24-12.69] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1092	chr10	66491027	66491028	rs182013377	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	10q21.3	NR	rs182013377-A	0.99306944	2E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1092	chr10	66549180	66549181	rs16920379	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	10q21.3	CTNNA3	rs16920379-A	0.02	5E-6	(African American)	0.7	0.4-1 unit increase	Illumina [NR] (imputed)	N
1092	chr10	66576637	66576638	rs74139383	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	10q21.3		rs74139383-C	0.898493	7E-6		0.0141756	[0.008-0.0203] unit increase	Illumina [13900000] (imputed)	N
1093	chr10	66606195	66606196	rs117212863	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	10q21.3	NR	rs117212863-?	NR	1E-6		2.051161	[1.53-2.75]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1093	chr10	66626610	66626611	rs2933451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q21.3	NR	rs2933451-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1093	chr10	66626610	66626611	rs2933451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q21.3		rs2933451-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1093	chr10	66626610	66626611	rs2933451	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q21.3	NA	rs2933451-A	0.669	2E-10		0.0129	[0.009-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
1093	chr10	66651838	66651839	rs2932878	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q21.3	CTNNA3	rs2932878-A	0.837	8E-9		0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1093	chr10	66652164	66652165	rs35377646	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10q21.3	CTNNA3	rs35377646-A	0.8364	2E-8		0.01462654	[0.0095-0.0198] unit decrease	Illumina [9339358] (imputed)	N
1093	chr10	66664136	66664137	rs1492436	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10q21.3	CTNNA3	rs1492436-A	0.8352	1E-8		0.014871354	[0.0097-0.02] unit decrease	Illumina [9339358] (imputed)	N
1094	chr10	66719240	66719241	rs117521942	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	10q21.3	NR	rs117521942-?	NR	3E-6		2.0097754	[1.50-2.69]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1094	chr10	66784099	66784100	rs10822407	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	10q21.3	intergenic	rs10822407-?	NR	2E-7	(Male, Post-puberty)	0.149	[0.092-0.206] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1094	chr10	66813927	66813928	rs10996167	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs10996167-C	0.6512	7E-9		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1094	chr10	66819107	66819107	rs201205380	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	10q21.3	NR	rs201205380-?	NR	6E-6		0.9012	[0.47-1.34] unit increase	Illumina [at least 560000] (imputed)	N
1094	chr10	66842455	66842456	rs10996188	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q21.3	NR	rs10996188-?		5E-6				Illumina [4322238] (imputed)	N
1095	chr10	66855252	66855253	rs61858823	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nitrofurantoin)	64 European ancestry cases, 10,588 European ancestry controls	NA	10q21.3		rs61858823-?		5E-7		5.63	2.88-11.02	Illumina [505740] (imputed)	N
1095	chr10	66909830	66909831	rs1949063	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	10q21.3		rs1949063-A	NR	7E-7	10	0.74	unit decrease	Illumina [487523]	N
1096	chr10	67033839	67033840	rs80250031	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	10q21.3		rs80250031-?	NR	8E-6				Illumina [7401356] (imputed)	N
1096	chr10	67060806	67060807	rs10761940	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	10q21.3		rs10761940-A	NR	2E-6	10	0.76	unit decrease	Illumina [487523]	N
1096	chr10	67082468	67082469	rs12415317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10q21.3		rs12415317-A	NR	3E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1097	chr10	67188210	67188211	rs12773747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q21.3	Intergenic	rs12773747-A	0.2441	7E-10		0.0205	[0.014-0.027] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1097	chr10	67206760	67206761	rs10996426	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q21.3	NR	rs10996426-A	0.251491	9E-10		0.04438783	[0.03-0.059] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1097	chr10	67206760	67206761	rs10996426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q21.3	Intergenic	rs10996426-A	0.7564	9E-10	(MTAG)	0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1097	chr10	67213588	67213589	rs10996430	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q21.3	ENSG00000228065	rs10996430-A	NR	1E-8		5.731	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1098	chr10	67245170	67245171	rs7097842	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	10q21.3	NR	rs7097842-G	0.59	7E-16		1.1	NR	NR [8853336] (imputed)	N
1098	chr10	67252326	67252327	rs2394146	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q21.3	NR	rs2394146-T	0.412591	2E-8		0.0176239	[0.011-0.024] unit increase	NR [19129689] (imputed)	N
1098	chr10	67262088	67262089	rs7912521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q21.3	NR	rs7912521-C	0.415103	3E-61		0.0492378	[0.043-0.055] unit increase	Affymetrix [16577313] (imputed)	N
1098	chr10	67262088	67262089	rs7912521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10q21.3	NR	rs7912521-C	0.414855	1E-51		0.0306435	[0.027-0.035] unit increase	Affymetrix [16583148] (imputed)	N
1098	chr10	67262088	67262089	rs7912521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	10q21.3	NR	rs7912521-C	0.41558799999999996	6E-94		0.061199	[0.055-0.067] unit increase	Affymetrix [16577424] (imputed)	N
1098	chr10	67293783	67293784	rs75752490	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10q21.3	ENSG00000228065	rs75752490-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1098	chr10	67316895	67316896	rs76794506	33625064	Cindi Z	2021-02-17	J Acquir Immune Defic Syndr	Genetic Associations with Weight Gain among South Africans who Initiated Dolutegravir- and Tenofovir-containing Regimens.	Response to tenofovir alafenamide (body weight gain)	160 Black South African individuals	NA	10q21.3	Intergenic	rs76794506-?	NR	9E-8				Illumina [NR] (imputed)	N
1099	chr10	67465947	67465948	rs10996604	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	10q21.3	LINC01515	rs10996604-?	NR	9E-6	(AA)			Illumina [up to 666531]	N
1100	chr10	67509526	67509527	rs10762005	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.3		rs10762005-T	0.949	7E-10		0.017	[0.011-0.023] unit decrease	NR [NR] (imputed)	N
1100	chr10	67518137	67518138	rs7072338	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	10q21.3	LINC01515	rs7072338-T	0.06516	4E-9		0.4461	unit increase	Illumina [519442]	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	7E-10	(GALE)	0.1817	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	2E-9	(PSMD14)	0.0969	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	2E-8	(PSMD3)	0.05048	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	2E-8	(GPX4)	0.01604	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	1E-8	(UCHL3)	0.01728	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	1E-8	(PSMD13)	0.08598	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67551942	67551943	rs16921857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs16921857-G	0.01045	1E-8	(ACAD11)	0.09087	NR unit decrease	Illumina [1671387] (imputed)	N
1100	chr10	67623969	67623970	rs10996738	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		10q21.3	NR	rs10996738-G	NR	1E-6		1.1212798	[1.07-1.17]	Affymetrix [5734850] (imputed)	N
1101	chr10	67708358	67708359	rs1670140	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.3	NR	rs1670140-?	NR	1E-7				Affymetrix [NR]	N
1101	chr10	67732123	67732124	rs12254371	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs12254371-C	0.01045	7E-12	(KRT2)	0.5651	NR unit increase	Illumina [1671387] (imputed)	N
1101	chr10	67743653	67743654	rs72791417	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	10q21.3	CTNNA3	rs72791417-A	0.16	1E-6		1.4493	[0.59-0.8]	Illumina [1795103]	N
1101	chr10	67761719	67761720	rs12356475	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	10q21.3	CTNNA3	rs12356475-C	NR	1E-6		1.25	NR	Illumina [11532644] (imputed)	N
1102	chr10	67767950	67767951	rs12359372	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs12359372-T	0.6624	6E-10		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1102	chr10	67767950	67767951	rs12359372	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs12359372-T	0.6624	6E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1102	chr10	67774865	67774866	rs10996825	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q21.3		rs10996825-T	0.851	1E-8		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1102	chr10	67788368	67788369	rs189142060	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (felt hated by family member) interaction	124,481 European ancestry individuals	NA	10q21.3		rs189142060-?	NR	4E-8		0.5637	[0.36-0.77] unit increase	Affymetrix [NR] (imputed)	N
1102	chr10	67804180	67804180	rs71035108	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	10q21.3	CTNNA3	rs71035108-?	NR	7E-6	(Hispanic/Latino)			NR [at least 880000]	N
1102	chr10	67828435	67828436	rs10509251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs10509251-T	0.22	4E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr10	67921812	67921813	rs200868329	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	10q21.3		rs200868329-AT	NR	3E-6	(GLM)	7.5455	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1103	chr10	67951368	67951369	rs1462813	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1462813-A	0.4352	2E-8		0.0114251375	[0.0074-0.0154] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1103	chr10	67952485	67952486	rs10822743	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q21.3	Intergenic	rs10822743-T	0.4317	3E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr10	67954064	67954065	rs10822745	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.3	Intergenic	rs10822745-T	0.5809	2E-13	(MTAG)	0.0123	[0.009-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr10	67954064	67954065	rs10822745	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs10822745-T	0.5763	9E-15	(conditional-joint)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr10	67963185	67963186	rs7920624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs7920624-A	0.4783	1E-17		0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr10	67963185	67963186	rs7920624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs7920624-A	0.4783	7E-19	(MTAG)	0.0116	[0.0091-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr10	67964372	67964373	rs1471384	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	10q21.3	CTNNA3	rs1471384-?		4E-6	(AA)			Illumina [up to 524000]	N
1103	chr10	67964513	67964514	rs7910869	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	10q21.3	NR	rs7910869-T	0.79	8E-10		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1103	chr10	67965009	67965010	rs7914680	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q21.3	NR	rs7914680-T	0.7128	2E-8		0.013889777	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1103	chr10	67966573	67966574	rs12251332	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10q21.3	CTNNA3	rs12251332-C		5E-8		0.17	[0.11-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	8E-9	(-10 ms)	0.0315274	[0.021-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	7E-12	(0 ms)	0.0388306	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	7E-11	(-4 ms)	0.0364306	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	5E-10	(-8 ms)	0.0342525	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	3E-8	(4 ms)	0.0312756	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	2E-11	(-2 ms)	0.0381523	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1103	chr10	67996246	67996247	rs1037985	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs1037985-C	0.562347	1E-10	(2 ms)	0.0364115	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1104	chr10	68085324	68085325	rs10822809	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10q21.3	CTNNA3	rs10822809-C	NR	3E-6	(number of awakenings after sleep onset)	0.1396	[0.081-0.198] unit increase	Affymetrix [7141204] (imputed)	N
1104	chr10	68088507	68088508	rs10762058	19187332	Kim SH	2009-02-01	Clin Exp Allergy	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	10q21.3	CTNNA3	rs10762058-G	0.25	6E-6		5.0	[2.36-10.6]	Affymetrix [312978]	N
1104	chr10	68121738	68121739	rs567600920	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q21.3		rs567600920-G	0.0010531	6E-6		0.47374	[0.27-0.68] unit decrease	Affymetrix [15580782] (imputed)	N
1105	chr10	68165266	68165267	rs2441755	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	10q21.3	CTNNA3	rs2441755-?	NR	4E-6	(DMFS5)			Illumina [518997]	N
1105	chr10	68165725	68165726	rs147387178	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	10q21.3	CTNNA3	rs147387178-T	NR	2E-7		0.63	[0.39-0.87] unit decrease	Illumina [7410776] (imputed)	N
1105	chr10	68177327	68177328	rs4746582	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q21.3	Intergenic	rs4746582-A	0.7456	1E-9	(MTAG)	0.0116	[0.0079-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr10	68192713	68192714	rs4469771	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs4469771-T	0.6802	2E-11		0.0101	[0.0072-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1105	chr10	68196851	68196852	rs2456661	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	10q21.3		rs2456661-?	NR	2E-7		0.29	[0.18-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1105	chr10	68220938	68220939	rs61867238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs61867238-A	0.242	2E-12	(MTAG)	0.0108	[0.0079-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr10	68224204	68224205	rs10822834	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	10q21.3	NR	rs10822834-G	NR	9E-6		0.251	[0.14-0.36] unit decrease	Illumina [6319684] (imputed)	N
1105	chr10	68224885	68224886	rs2441727	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	10q21.3	NR	rs2441727-G	0.05	1E-6		1.35	[1.15-1.60]	Illumina [439828]	N
1105	chr10	68282505	68282506	rs7923033	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	10q21.3		rs7923033-?	NR	9E-6		4.45	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1105	chr10	68282505	68282506	rs7923033	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	10q21.3		rs7923033-?	NR	8E-6		4.46	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1106	chr10	68309167	68309168	rs4746598	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	10q21.3	CTNNA3	rs4746598-?	NR	6E-6	(females)	2.331334	NR unit decrease	Illumina [7708309] (imputed)	N
1106	chr10	68309167	68309168	rs4746598	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	10q21.3	CTNNA3	rs4746598-?	NR	2E-7		2.192336	NR unit decrease	Illumina [7708309] (imputed)	N
1106	chr10	68331377	68331378	rs11597859	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	10q21.3	CTNNA3	rs11597859-?	NR	1E-6		0.58	0.36-0.80	Illumina [7605010] (imputed)	N
1106	chr10	68374083	68374084	rs7909235	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q21.3	CTNNA3	rs7909235-A	0.193	8E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1106	chr10	68397444	68397445	rs10762080	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	10q21.3	NR	rs10762080-G	0.5858	6E-7		0.006	[0.0036-0.0084] unit decrease	NR [7666894] (imputed)	N
1106	chr10	68418845	68418846	rs10997287	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	10q21.3	CTNNA3	rs10997287-?	NR	9E-6		4.0816326	[NR]	Illumina [498081]	N
1107	chr10	68423132	68423133	rs10740246	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10q21.3	NR	rs10740246-C	0.594715449636095	2E-8		0.0069906246	[0.0045-0.0094] unit decrease	NR [NR]	N
1107	chr10	68423132	68423133	rs10740246	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q21.3	NR	rs10740246-C	0.594715449636095	3E-8		0.008998115	[0.0058-0.0122] unit decrease	NR [NR]	N
1107	chr10	68423132	68423133	rs10740246	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q21.3	NR	rs10740246-C	0.594715449636095	2E-8		0.005997359	[0.0039-0.0081] unit decrease	NR [NR]	N
1107	chr10	68429371	68429372	rs4746622	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	CTNNA3	rs4746622-?	NR	3E-6	(TAG 52:3)	0.190422	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1107	chr10	68501838	68501839	rs117831247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	10q21.3	NR	rs117831247-C	NR	2E-6		0.8334	[0.49-1.18] SD units increase	NR [10700000] (imputed)	N
1107	chr10	68530041	68530042	rs4554778	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10q21.3	NR	rs4554778-T	0.80195932630407	2E-10		0.007340402	[0.0051-0.0096] unit decrease	NR [NR]	N
1107	chr10	68530041	68530042	rs4554778	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10q21.3	NR	rs4554778-T	0.80195932630407	3E-10		0.008977495	[0.0062-0.0118] unit decrease	NR [NR]	N
1107	chr10	68530041	68530042	rs4554778	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q21.3	NR	rs4554778-T	0.80195932630407	2E-10		0.011688437	[0.0081-0.0153] unit decrease	NR [NR]	N
1107	chr10	68530041	68530042	rs4554778	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q21.3	NR	rs4554778-T	0.80195932630407	2E-10		0.007456325	[0.0052-0.0098] unit decrease	NR [NR]	N
1107	chr10	68531069	68531070	rs4304650	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	10q21.3	NR	rs4304650-C	0.801455640622711	1E-9		0.00953537	[0.0065-0.0126] unit decrease	NR [NR]	N
1108	chr10	68556700	68556701	rs10733828	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q21.3	NR	rs10733828-T	0.773	1E-8		0.0073833	[0.0049-0.0099] unit decrease	NR [9732723] (imputed)	N
1108	chr10	68558330	68558331	rs72802656	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1191 abundance in stool	5,959 Finnish ancestry individuals	NA	10q21.3		rs72802656-A	0.0112009	5E-8		0.204115	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
1108	chr10	68583977	68583978	rs76326634	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q21.3	NR	rs76326634-?	NR	4E-6		0.0079245	[0.0046-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1108	chr10	68593336	68593337	rs4259735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	CTNNA3	rs4259735-?	NR	9E-6	(inosine)	0.17481203	[0.097-0.252] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1108	chr10	68598291	68598292	rs7902091	23358160	Borglum AD	2013-01-29	Mol Psychiatry	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia (cytomegalovirus infection interaction)	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	10q21.3	CTNNA3	rs7902091-A	NR	7E-7		5.331	[NR]	Illumina [541148]	N
1108	chr10	68636893	68636894	rs6480234	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q21.3		rs6480234-T	0.525	2E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1108	chr10	68636893	68636894	rs6480234	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q21.3	Intergenic	rs6480234-T	0.525	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1108	chr10	68640950	68640951	rs4142041	17158188	Bierut LJ	2006-12-07	Hum Mol Genet	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Nicotine dependence	482 European ancestry cases, 466 European ancestry controls	568 European ancestry cases, 413 European ancestry controls	10q21.3	CTNNA3	rs4142041-G	0.34	6E-6		1.14	[0.97-1.35]	Perlegen [2400000]	N
1108	chr10	68658985	68658986	rs7908463	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs7908463-C	0.4353	6E-9		0.011848034	[0.0079-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1108	chr10	68679548	68679549	rs12773625	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q21.3	CTNNA3	rs12773625-?	NR	3E-8		0.011237123	[0.0073-0.0152] unit increase	NR [7306098]	N
1109	chr10	68689082	68689083	rs1925576	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q21.3	NR	rs1925576-A	0.5369	2E-8		0.012474029	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1109	chr10	68709602	68709603	rs17297327	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q21.3		rs17297327-?	NR	6E-7		0.15	[0.089-0.211] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1109	chr10	68724762	68724763	rs17231595	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	10q21.3		rs17231595-T	0.017	5E-6		4.8		Illumina [5409651] (imputed)	N
1109	chr10	68810783	68810784	rs4745925	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.3	NR	rs4745925-?	NR	3E-12				Affymetrix [NR]	N
1110	chr10	68845714	68845715	rs12764057	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	10q21.3	CTNNA3	rs12764057-G	0.3674	1E-8		1.17	[1.09-1.26]	Affymetrix [at least 416462] (imputed)	N
1110	chr10	68863296	68863297	rs149014140	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	10q21.3		rs149014140-?	NR	2E-8		4.26778	[2.57-7.07]	NR [NR] (imputed)	N
1110	chr10	68879802	68879803	rs10997517	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q21.3	intergenic	rs10997517-C	0.23	6E-6		1.14	[1.08-1.21]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1110	chr10	68894484	68894485	rs10997525	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q21.3	NR	rs10997525-G	0.145	9E-6	(IFNalpha_STAT1_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1110	chr10	68910895	68910896	rs75495219	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	10q21.3	CTNNA3	rs75495219-G	0.09	8E-7	(Oxicams [M01AC])	1.84		Illumina [16500000] (imputed)	N
1110	chr10	68921211	68921212	rs2394353	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs2394353-C	0.0122	2E-8	(ATIC)	0.2078	NR unit decrease	Illumina [1671387] (imputed)	N
1111	chr10	69008138	69008139	rs141448180	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs141448180-C	0.0073	6E-6	(EA)	0.2059	[0.12-0.29] unit decrease	Illumina [~ 11800000] (imputed)	N
1111	chr10	69027047	69027048	rs190411362	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	10q21.3		rs190411362-?	NR	8E-8		4.28379		NR [NR] (imputed)	N
1112	chr10	69114609	69114610	rs560625443	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs560625443-A	8.0E-4	8E-63		39.371	[34.76-43.98] mmHg increase	Affymetrix [NR] (imputed)	N
1112	chr10	69114609	69114610	rs560625443	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs560625443-A	8.0E-4	3E-89		32.0892	[28.95-35.23] mmHg increase	Affymetrix [NR] (imputed)	N
1112	chr10	69153427	69153428	rs7073807	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	10q21.3	NR	rs7073807-C		2E-6		0.1682	[0.098-0.238] SD units decrease	NR [10700000] (imputed)	N
1112	chr10	69172902	69172903	rs7923367	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q21.3	NR	rs7923367-?	NR	5E-10				Affymetrix [NR]	N
1113	chr10	69213189	69213190	rs558363983	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs558363983-C	9.0E-4	3E-43		33.882	[29.07-38.69] mmHg increase	Affymetrix [NR] (imputed)	N
1113	chr10	69213189	69213190	rs558363983	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs558363983-C	9.0E-4	6E-42		24.4668	[20.93-28] mmHg increase	Affymetrix [NR] (imputed)	N
1113	chr10	69235091	69235092	rs533451950	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs533451950-C	9.0E-4	5E-42		31.727	[27.15-36.3] mmHg increase	Affymetrix [NR] (imputed)	N
1113	chr10	69235091	69235092	rs533451950	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q21.3	intergenic	rs533451950-C	9.0E-4	3E-44		23.3793	[20.1-26.66] mmHg increase	Affymetrix [NR] (imputed)	N
1113	chr10	69264596	69264597	rs10823051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q21.3		rs10823051-C	NR	2E-10		0.08	[0.055-0.105] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1113	chr10	69291719	69291720	rs10762171	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	10q21.3	CTNNA3	rs10762171-?	NR	4E-6	(AA)	1.22	[1.12-1.33]	Illumina [at least 5000000] (imputed)	N
1114	chr10	69339163	69339164	rs12220165	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	10q21.3	CTNNA3	rs12220165-G		5E-8	(EA)	0.037	[0.023-0.051] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1114	chr10	69350562	69350563	rs7914287	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs7914287-T		8E-6		0.202	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1114	chr10	69350562	69350563	rs7914287	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q21.3	CTNNA3	rs7914287-T		6E-10		0.187	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1114	chr10	69399893	69399894	rs186036693	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs186036693-G	0.007	2E-6	(EA)	0.216	[0.13-0.31] unit decrease	Illumina [~ 11800000] (imputed)	N
1114	chr10	69435993	69435994	rs117892132	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	10q21.3		rs117892132-?	NR	7E-8		4.27772		NR [NR] (imputed)	N
1114	chr10	69457643	69457644	rs77932157	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	10q21.3	NR	rs77932157-?	NR	3E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1115	chr10	69493927	69493928	rs573819939	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10q21.3	AKR1B10P1	rs573819939-T	0.999	9E-6		1.8638	[1.04-2.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1115	chr10	69510694	69510695	rs189157202	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q21.3	NR	rs189157202-T	0.007	2E-6	(EA)	0.2152	[0.13-0.3] unit decrease	Illumina [~ 11800000] (imputed)	N
1115	chr10	69559408	69559409	rs10997813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q21.3		rs10997813-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1115	chr10	69569518	69569519	rs10997819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q21.3		rs10997819-T	NR	4E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1115	chr10	69569518	69569519	rs10997819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q21.3	NR	rs10997819-C	0.34364	5E-12		0.014048	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1115	chr10	69570690	69570691	rs10997821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q21.3		rs10997821-G	NR	3E-11		0.0176	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1115	chr10	69571335	69571336	rs3740049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q21.3	DNAJC12	rs3740049-A	0.103978	5E-13		0.026152072	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr10	69571335	69571336	rs3740049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q21.3	DNAJC12	rs3740049-A	0.103952	8E-14		0.027117476	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr10	69583854	69583855	rs35858192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q21.3	DNAJC12	rs35858192-G	0.649622	7E-9		0.013670351	[0.009-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr10	69586391	69586392	rs138645114	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	10q21.3		rs138645114-G		3E-6		1.1	[1.06-1.15]	NR [2286360] (imputed)	N
1115	chr10	69586391	69586392	rs138645114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs138645114-G	0.0934181	4E-14				Affymetrix, Illumina [23114412] (imputed)	N
1115	chr10	69586391	69586392	rs138645114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q21.3	NR	rs138645114-G	0.055732	2E-14		0.034865	[0.026-0.044] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1115	chr10	69586511	69586512	rs181427197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q21.3		rs181427197-G	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1115	chr10	69594594	69594595	rs7900806	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q21.3	DNAJC12	rs7900806-A	0.349594	8E-11		0.0014593	[0.00098-0.00194] unit increase	Affymetrix [13995440] (imputed)	N
1116	chr10	69599485	69599486	rs7074303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q21.3	NR	rs7074303-G	0.670206	9E-13		0.014048	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1116	chr10	69614273	69614275	rs540688381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10q21.3		rs540688381-C	NR	2E-8		0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1116	chr10	69614273	69614275	rs540688381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q21.3	NR	rs540688381-C	NR	2E-9		0.0171	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1116	chr10	69622130	69622133	rs1366946537	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	10q21.3		rs1366946537-C	0.03008	6E-7		0.1868		Illumina [7608150]	N
1116	chr10	69623270	69623271	rs17712705	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.3	DNAJC12, SIRT1	rs17712705-G	0.6735	3E-9		1.0250076		Affymetrix [11880941] (imputed)	N
1116	chr10	69624179	69624180	rs12415800	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder (unexposed to adversity)	3,139 Han Chinese ancestry cases, 3,832 Han Chinese ancestry controls	NA	10q21.3	NR	rs12415800-A	0.46	3E-6		4.66	z score increase	NR [4313801] (imputed)	N
1116	chr10	69624179	69624180	rs12415800	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder	4,785 Han Chinese ancestry cases, 4,814 Han Chinese ancestry controls	NA	10q21.3	NR	rs12415800-A	0.46	5E-7		5.02	z score increase	NR [4313801] (imputed)	N
1116	chr10	69630906	69630907	rs7100912	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q21.3	SIRT1	rs7100912-G	0.656026750791563	7E-6		0.0025422	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1116	chr10	69631392	69631393	rs6480299	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q21.3	NR	rs6480299-C	0.330304	5E-18		0.0105682	[0.0082-0.013] unit increase	Affymetrix [16582621] (imputed)	N
1116	chr10	69631392	69631393	rs6480299	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q21.3	NR	rs6480299-C	0.330304	4E-17		0.0109315	[0.0084-0.0135] unit increase	Affymetrix [16582614] (imputed)	N
1116	chr10	69634201	69634202	rs10997847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs10997847-G	0.56575	1E-13				Affymetrix, Illumina [24649327] (imputed)	N
1116	chr10	69636887	69636888	rs10823098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q21.3		rs10823098-A	NR	2E-12		0.024	[0.017-0.031] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1116	chr10	69663149	69663149	rs112882604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q21.3		rs112882604-CT	NR	6E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1116	chr10	69664880	69664881	rs7096385	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q21.3	SIRT1, MYPN	rs7096385-T	0.092	5E-8		1.07	[1.05-1.10]	Illumina [34740186] (imputed)	N
1116	chr10	69716082	69716083	rs117880827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.3	HERC4	rs117880827-T	0.9176	2E-9		0.0208	[0.014-0.027] unit increase	Affymetrix [18391927] (imputed)	N
1116	chr10	69726810	69726811	rs566192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q21.3	NR	rs566192-C	0.67545	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1117	chr10	69737686	69737687	rs181551370	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	10q21.3		rs181551370-?	NR	1E-6		3.88625		NR [NR] (imputed)	N
1117	chr10	69788201	69788202	rs545435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q21.3		rs545435-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1117	chr10	69817839	69817840	rs76194386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q21.3		rs76194386-G	0.259947	5E-8		0.019817	[0.013-0.027] unit decrease	Illumina [13479178] (imputed)	N
1117	chr10	69819916	69819917	rs674486	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q21.3	NR	rs674486-C	0.350394	1E-8		0.0176204	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1117	chr10	69827011	69827012	rs503677	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q21.3	NR	rs503677-A	0.35	6E-11		0.0126	[0.0088-0.0164] unit increase	NR [NR]	N
1117	chr10	69828209	69828210	rs471341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q21.3		rs471341-T	NR	2E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1117	chr10	69834827	69834828	rs80117551	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q21.3	HERC4	rs80117551-T	0.255	2E-8	(Japanese)	0.022	[0.014-0.03] unit decrease	Illumina [6108953] (imputed)	N
1117	chr10	69835196	69835197	rs1204083	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q21.3	NR	rs1204083-C	0.345797	3E-18		0.0120625	[0.0094-0.0147] unit increase	Affymetrix [16578495] (imputed)	N
1117	chr10	69835196	69835197	rs1204083	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q21.3	NR	rs1204083-C	0.34602999999999995	3E-17		0.00722711	[0.0055-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
1117	chr10	69835196	69835197	rs1204083	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q21.3	NR	rs1204083-C	0.34602999999999995	1E-14		0.00758054	[0.0057-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
1117	chr10	69853285	69853286	rs10823135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q21.3		rs10823135-G	NR	2E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1117	chr10	69855362	69855363	rs10823136	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	10q21.3	SIRT1	rs10823136-T	0.9221	2E-10		0.254	[0.18-0.33] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1118	chr10	69879708	69879709	rs6480305	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	10q21.3	MYPN	rs6480305-A	NR	9E-7	(fixed)	1.0726		Illumina [87827]	N
1118	chr10	69886949	69886950	rs10997940	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	10q21.3	MYPN	rs10997940-C	0.5979	3E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix [~ 7740000] (imputed)	N
1118	chr10	69910455	69910456	rs72795411	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q21.3	NR	rs72795411-T	NR	4E-9		0.0368	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr10	69933920	69933921	rs10997975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	MYPN	rs10997975-A	NR	4E-8		0.0155142	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1118	chr10	69933920	69933921	rs10997975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	10q21.3	MYPN	rs10997975-?	NR	4E-18		0.03714	[0.029-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1118	chr10	69933968	69933969	rs7916821	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.3	MYPN	rs7916821-A	0.4945	4E-21		0.0184	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1118	chr10	69933968	69933969	rs7916821	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	10q21.3	MYPN	rs7916821-A	0.495	4E-9		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1118	chr10	69933968	69933969	rs7916821	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	10q21.3	MYPN	rs7916821-A	0.495	4E-14		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1118	chr10	69937191	69937192	rs10997979	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	10q21.3	MYPN	rs10997979-A	0.501	4E-13		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1118	chr10	69937986	69937987	rs4745948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q21.3		rs4745948-A	NR	5E-30		0.0187	[0.016-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1118	chr10	69941133	69941134	rs1900016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.3		rs1900016-?	NR	1E-54				NR [~ 8900000] (imputed)	N
1118	chr10	69943633	69943634	rs58180147	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q21.3	NR	rs58180147-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1118	chr10	69951840	69951841	rs10823156	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q21.3	MYPN	rs10823156-C	0.516	5E-13	(EA)	0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1118	chr10	69951840	69951841	rs10823156	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q21.3	MYPN	rs10823156-G	0.6054	7E-19		8.87	NR z score decrease	Illumina [26237160] (imputed)	N
1118	chr10	69953415	69953416	rs10998009	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	10q21.3	MYPN	rs10998009-A	0.55	4E-9		0.305	[0.2-0.41] unit decrease	Affymetrix [NR] (imputed)	N
1118	chr10	69956270	69956271	rs376566696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q21.3		rs376566696-T	NR	2E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1118	chr10	69956271	69956272	rs7914178	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q21.3	MYPN	rs7914178-A	0.567	7E-15		0.0032	[0.0024-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1118	chr10	69957349	69957350	rs7095607	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10q21.3	MYPN	rs7095607-A	0.4952	9E-15		0.031	[0.023-0.039] unit decrease	Affymetrix [27624732] (imputed)	N
1118	chr10	69960197	69960198	rs12358805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q21.3	NR	rs12358805-C	NR	6E-11		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1118	chr10	69960197	69960198	rs12358805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q21.3	NR	rs12358805-C	NR	1E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr10	69960429	69960430	rs7084764	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q21.3	MYPN	rs7084764-A	0.4962	3E-22		0.0026	[0.002-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1118	chr10	69962953	69962954	rs10998018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	10q21.3		rs10998018-A	0.317505	4E-16		0.0249564	[0.019-0.031] unit decrease	Illumina [13478778] (imputed)	N
1118	chr10	69962953	69962954	rs10998018	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10q21.3	MYPN	rs10998018-A	0.4965	4E-7		0.0128	[0.0079-0.0177] unit decrease	Affymetrix [19819130] (imputed)	N
1118	chr10	69962953	69962954	rs10998018	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q21.3	MYPN	rs10998018-A	0.4965	2E-21		0.0224	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1118	chr10	69962953	69962954	rs10998018	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q21.3	MYPN	rs10998018-A	0.4965	4E-20		0.0215	[0.017-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1118	chr10	69962953	69962954	rs10998018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q21.3		rs10998018-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q21.3	MYPN	rs7475348-T	0.4595	7E-32		0.0031	[0.0025-0.0037] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	10q21.3	MYPN	rs7475348-T	0.302	6E-11		0.0049	[0.0035-0.0063] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	10q21.3	MYPN	rs7475348-C	0.54	7E-6		1.0379905	[1.02-1.05]	Affymetrix, Illumina [9585923] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10q21.3	MYPN	rs7475348-C	0.607	9E-19		0.366	[0.18-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	10q21.3	MYPN	rs7475348-?	NR	3E-16		0.03368	[0.026-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1118	chr10	69965176	69965177	rs7475348	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	10q21.3	MYPN	rs7475348-?	NR	1E-16		0.03327	[0.025-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1118	chr10	69966250	69966251	rs3814184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q21.3		rs3814184-A	NR	2E-8		0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1118	chr10	69967446	69967447	rs6480314	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	MYPN	rs6480314-A	NR	2E-7		0.244	[0.14-0.35] unit increase	Illumina [~ 2740000] (imputed)	N
1118	chr10	69975988	69975989	rs2394457	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q21.3	ATOH7	rs2394457-?	NR	5E-6	(TAG 54:3)	0.14881021	[0.085-0.213] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1118	chr10	69983713	69983714	rs72795456	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q21.3	ATOH7	rs72795456-T	0.0543	4E-6		0.0696	[0.04-0.099] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	ATOH7	rs7916697-A	NR	5E-8		0.0179536	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	10q21.3	ATOH7	rs7916697-A	0.24	3E-67		0.02	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	10q21.3	ATOH7	rs7916697-A	0.24	7E-35		0.01	[0.008-0.012] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	10q21.3	ATOH7	rs7916697-A	0.24	9E-13		0.019	[0.013-0.025] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Optic disc radius	3,094 European ancestry individuals	NA	10q21.3	ATOH7	rs7916697-G	NR	2E-10		3.481	[2.42-4.54] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1118	chr10	69991852	69991853	rs7916697	21307088	Khor CC	2011-02-09	Hum Mol Genet	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc area	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	10q21.3	ATOH7	rs7916697-A	NR	2E-15	(Asian)	0.0938	[NR] mm2 decrease	Illumina [551808]	N
1119	chr10	69995666	69995667	rs7916410	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q21.3	ATOH7	rs7916410-T	0.24	3E-246		0.07	unit decrease	Affymetrix [8928767] (imputed)	N
1119	chr10	69995666	69995667	rs7916410	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	10q21.3	ATOH7	rs7916410-T	0.234	3E-44		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1119	chr10	69995666	69995667	rs7916410	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	10q21.3	ATOH7	rs7916410-T	0.233	4E-89		0.093	[0.083-0.103] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
1119	chr10	69995666	69995667	rs7916410	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	10q21.3	ATOH7	rs7916410-T		2E-90	(EA)	0.101	[0.091-0.111] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	69995666	69995667	rs7916410	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	10q21.3	ATOH7	rs7916410-T		2E-112		0.097	[0.089-0.105] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	69998054	69998055	rs1900005	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	10q21.3	ATOH7	rs1900005-A	NR	7E-46		0.018	[0.016-0.02] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	69998054	69998055	rs1900005	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	10q21.3	ATOH7	rs1900005-A	NR	2E-42	(EA)	0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	69998054	69998055	rs1900005	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	10q21.3	ATOH7	rs1900005-A	NR	5E-31		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70000880	70000881	rs1900004	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	10q21.3	ATOH7	rs1900004-T	0.23	2E-63	(EA)	0.102	[0.090-0.114] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70000880	70000881	rs1900004	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	10q21.3	ATOH7	rs1900004-T	0.23	1E-73		0.097	[0.087-0.107] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70000880	70000881	rs1900004	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	10q21.3	ATOH7, PBLD	rs1900004-T	0.22	2E-8		0.01	[0.009-0.017] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70000880	70000881	rs1900004	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	10q21.3	ATOH7, PBLD	rs1900004-T	0.22	3E-35		0.07	[0.06-0.08] mm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70001639	70001640	rs56238729	28061514	Nannini DR	2017-01-01	Invest Ophthalmol Vis Sci	A Genome-Wide Association Study of Vertical Cup-Disc Ratio in a Latino Population.	Optic nerve measurement (cup-to-disc ratio)	3,596 Latino individuals	941 Latino individuals	10q21.3	ATOH7, PBLD	rs56238729-?		1E-13				Illumina [6844888] (imputed)	N
1119	chr10	70002019	70002020	rs41340944	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	10q21.3	RP11-153K11.3	rs41340944-A	0.0861	2E-6	(EA)	0.0369	[0.021-0.053] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1119	chr10	70011837	70011838	rs3858145	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	10q21.3	ATOH7	rs3858145-G	0.25	8E-8		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70011837	70011838	rs3858145	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	10q21.3	ATOH7	rs3858145-G	0.25	4E-10	(EA)	0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr10	70011837	70011838	rs3858145	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	ATOH7	rs3858145-A	NR	3E-10		0.295	[0.20-0.39] unit increase	Illumina [~ 2740000] (imputed)	N
1119	chr10	70011837	70011838	rs3858145	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	ATOH7	rs3858145-A	NR	2E-7		0.209	[0.11-0.30] unit increase	Illumina [~ 2740000] (imputed)	N
1119	chr10	70014229	70014230	rs10998035	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	10q21.3	ATOH7	rs10998035-C	0.945	4E-6		0.151	[0.086-0.216] unit decrease	Illumina [6150213] (imputed)	N
1119	chr10	70016677	70016678	rs10998036	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	10q21.3	ATOH7	rs10998036-C	NR	5E-12	(EA)	0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	70016677	70016678	rs10998036	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	10q21.3	ATOH7	rs10998036-C	NR	2E-9		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1119	chr10	70019370	70019371	rs12571093	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	10q21.3	PBLD	rs12571093-G	NR	2E-10		0.313	[0.21-0.42] unit increase	Illumina [~ 2740000] (imputed)	N
1119	chr10	70024527	70024528	rs9988687	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q21.3	PBLD	rs9988687-A	0.77	3E-209		0.07	unit increase	Affymetrix [8928767] (imputed)	N
1119	chr10	70024528	70024529	rs4551651	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q21.3	KRT19P4	rs4551651-A	0.78	8E-7		0.0429	[0.026-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1119	chr10	70038770	70038771	rs78041174	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	PBLD	rs78041174-A	NR	1E-8		0.0202838	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1119	chr10	70038893	70038894	rs61854835	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Optic disc radius	3,094 European ancestry individuals	NA	10q21.3	PBLD	rs61854835-G	NR	4E-11		3.84	[2.71-4.97] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1119	chr10	70040110	70040111	rs10762201	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	10q21.3	NR	rs10762201-G	0.76	1E-26		0.46	[0.38-0.54] unit increase	Affymetrix [9231066] (imputed)	N
1119	chr10	70040110	70040111	rs10762201	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	10q21.3	NR	rs10762201-G	0.76	1E-26		0.46	[0.38-0.54] unit increase	Affymetrix [9231066] (imputed)	N
1119	chr10	70043915	70043916	rs736535	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs736535-A	0.2108	4E-9	(PBLD)	0.2511	NR unit increase	Illumina [1671387] (imputed)	N
1119	chr10	70048117	70048118	rs78904265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q21.3	NR	rs78904265-G	0.03659	7E-9	(PBLD)	0.55	NR unit increase	Illumina [1671387] (imputed)	N
1119	chr10	70051809	70051810	rs3835100	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q21.3	PBLD	rs3835100-A	0.06	1E-56		0.08	unit decrease	Affymetrix [8928767] (imputed)	N
1119	chr10	70075893	70075894	rs117731828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q21.3	NR	rs117731828-T	NR	2E-11		0.0324	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1119	chr10	70103271	70103272	rs7910016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q21.3		rs7910016-C	NR	1E-35		0.0217	[0.018-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1119	chr10	70104566	70104567	rs41278506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q21.3	NR	rs41278506-G	NR	2E-16		0.0485	[0.037-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1120	chr10	70162642	70162642	rs71009055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	RUFY2	rs71009055-T	NR	2E-8		0.0205515	[0.013-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1120	chr10	70201110	70201112	rs72284640	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	10q21.3	NR	rs72284640-T	0.1182	1E-6		0.2297	[0.14-0.32] unit increase	Illumina [10677593] (imputed)	N
1120	chr10	70216192	70216193	rs78801084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	DNA2	rs78801084-A	NR	4E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1120	chr10	70217051	70217052	rs10998194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q21.3		rs10998194-C	NR	8E-10		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1120	chr10	70224531	70224532	rs10998203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	10q21.3		rs10998203-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1121	chr10	70255831	70255832	rs2394476	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	10q21.3		rs2394476-T	NR	1E-9		0.27		Illumina [NR] (imputed)	N
1121	chr10	70255831	70255832	rs2394476	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	10q21.3		rs2394476-T	NR	1E-9		0.26		Illumina [NR] (imputed)	N
1121	chr10	70280397	70280398	rs78573780	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	10q21.3	NR	rs78573780-?	NR	3E-6		70.5498	[41.48-99.62] unit decrease	Illumina [5432814] (imputed)	N
1121	chr10	70280397	70280398	rs78573780	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	10q21.3	NR	rs78573780-?	NR	2E-6		70.4836	[41.51-99.46] unit decrease	Illumina [5432814] (imputed)	N
1121	chr10	70311874	70311875	rs61856499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	TMEM14D	rs61856499-A	NR	7E-11		0.0314416	[0.022-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1121	chr10	70312848	70312849	rs4746777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	TET1	rs4746777-C	NR	7E-12		0.0268586	[0.019-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1121	chr10	70315388	70315389	rs10998272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	TET1	rs10998272-T	NR	1E-9		0.0389984	[0.026-0.052] unit decrease	Affymetrix [321016] (imputed)	N
1121	chr10	70315686	70315687	rs2457463	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	10q21.3	TET1	rs2457463-G	0.04	2E-7		0.187	[0.12-0.26] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1121	chr10	70320235	70320236	rs58627364	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	10q21.3	NR	rs58627364-T	0.139818	3E-6		1.129	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
1121	chr10	70324447	70324448	rs10998279	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q21.3	NR	rs10998279-?	NR	5E-7		0.0087989	[0.0054-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1121	chr10	70331037	70331038	rs10998288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q21.3		rs10998288-?	NR	6E-41				NR [~ 8900000] (imputed)	N
1121	chr10	70332671	70332672	rs12773594	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q21.3		rs12773594-A	0.1609	3E-9		0.104295	[0.067-0.141] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1121	chr10	70332861	70332862	rs12221107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q21.3	TET1	rs12221107-T	NR	5E-11		0.036014	[0.025-0.047] unit decrease	Affymetrix [321016] (imputed)	N
1121	chr10	70332861	70332862	rs12221107	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q21.3	NR	rs12221107-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1121	chr10	70342774	70342775	rs10998304	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q21.3	NR	rs10998304-C	0.4517	2E-11		0.0306	[0.022-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1121	chr10	70343196	70343196	rs35787829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q21.3		rs35787829-GA	0.211691	3E-15		0.0194598	[0.015-0.024] unit decrease	Illumina [13479295] (imputed)	N
1121	chr10	70343196	70343196	rs35787829	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q21.3	TET1	rs35787829-?	NR	1E-17		0.029929906	[0.023-0.037] unit decrease	Illumina [27896057] (imputed)	N
1121	chr10	70346739	70346740	rs2298117	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q21.3	TET1	rs2298117-C	0.552	4E-9		1.022755		Affymetrix [11880941] (imputed)	N
1121	chr10	70346739	70346740	rs2298117	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q21.3	TET1	rs2298117-T	0.4895	2E-9		0.0111	[0.0076-0.0146] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1121	chr10	70347292	70347292	rs112454648	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q21.3		rs112454648-A	0.44	4E-10				NR [NR] (imputed)	N
1121	chr10	70347292	70347292	rs112454648	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q21.3		rs112454648-A	0.44	8E-11		0.01	% increase	NR [NR] (imputed)	N
1121	chr10	70347292	70347292	rs112454648	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	10q21.3		rs112454648-A	0.44	9E-7		0.01	U/L increase	NR [NR] (imputed)	N
1121	chr10	70369821	70369822	rs12774282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q21.3	TET1	rs12774282-T	NR	7E-9		0.0350798	[0.023-0.047] unit decrease	Affymetrix [323123] (imputed)	N
1121	chr10	70382178	70382179	rs10998338	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q21.3	NR	rs10998338-G	0.5189	1E-15		0.0308	[0.023-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1122	chr10	70397788	70397789	rs10998356	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q21.3	NR	rs10998356-G	0.574684	3E-9		0.0399317	[0.026-0.053] unit increase	Affymetrix [17914406] (imputed)	N
1122	chr10	70399108	70399109	rs7095472	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q21.3	TET1	rs7095472-A	0.4665	8E-45		0.0267	[0.023-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1122	chr10	70404158	70404159	rs10998362	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	10q21.3	TET1	rs10998362-C	0.6833	2E-9		0.1367	[0.092-0.181] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1122	chr10	70444318	70444319	rs2030057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q21.3	TET1	rs2030057-T	NR	2E-9		0.0249679	[0.017-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1122	chr10	70452259	70452260	rs41278520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q21.3	NR	rs41278520-G	NR	2E-36		0.0815	[0.069-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1122	chr10	70464877	70464878	rs12777271	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q21.3	NR	rs12777271-?	NR	5E-6		0.0079172	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1122	chr10	70490105	70490106	rs12218439	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	10q21.3	CCAR1	rs12218439-A	0.96	5E-6	(AA)			Illumina [NR] (imputed)	N
1123	chr10	70575034	70575035	rs2454313	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q22.1		rs2454313-C	0.27	3E-11		6.64	z score increase	Affymetrix [9061022] (imputed)	N
1123	chr10	70587020	70587021	rs1573839	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q22.1		rs1573839-G	0.3	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
1123	chr10	70587020	70587021	rs1573839	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q22.1		rs1573839-G	0.3	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
1123	chr10	70590643	70590644	rs17554646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.1	STOX1	rs17554646-T	NR	4E-8		0.0411314	[0.026-0.056] unit decrease	Affymetrix [321016] (imputed)	N
1123	chr10	70592129	70592130	rs10762242	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q22.1	NR	rs10762242-C	0.2839	1E-10				NR [9056863] (imputed)	N
1123	chr10	70602855	70602856	rs10998457	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q22.1	NR	rs10998457-?	NR	3E-6		4.672	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1123	chr10	70607579	70607580	rs1163174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q22.1		rs1163174-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1123	chr10	70610713	70610714	rs11815653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.1	STOX1	rs11815653-T	NR	2E-11		0.0357306	[0.025-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1123	chr10	70626428	70626429	rs10998466	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	10q22.1	intergenic	rs10998466-A	0.01	4E-6		0.53	[0.31-0.75] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
1123	chr10	70632040	70632041	rs72801535	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	10q22.1	NR	rs72801535-C	0.0361	3E-6		84.523	[83.63-85.42]	Illumina [10000612] (imputed)	N
1123	chr10	70633262	70633263	rs2394495	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q22.1	NR	rs2394495-C	0.316	2E-10				NR [9056863] (imputed)	N
1124	chr10	70699719	70699720	rs7914303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs7914303-G	NR	3E-19		0.0793	[0.062-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1124	chr10	70712061	70712062	rs2017305	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	10q22.1	DDX21	rs2017305-A	0.92	9E-6		0.22	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1124	chr10	70751672	70751673	rs2429030	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q22.1	NR	rs2429030-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1124	chr10	70778485	70778486	rs3864814	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	10q22.1		rs3864814-A	0.08596	6E-7		0.5708	[0.4579-0.7116]	Affymetrix [7975321] (imputed)	N
1125	chr10	70800622	70800623	rs2998005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs2998005-G	NR	2E-9		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr10	70805372	70805373	rs10998535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q22.1		rs10998535-T	0.214619	9E-12		0.018408421	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1125	chr10	70805372	70805373	rs10998535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q22.1		rs10998535-T	0.214596	2E-9		0.016132854	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1125	chr10	70845090	70845091	rs10823297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs10823297-C	NR	3E-11		0.0444	[0.031-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1125	chr10	70856851	70856852	rs2229498	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIPK2	5,352 Icelandic ancestry individuals	NA	10q22.1		rs2229498-G	0.1609	5E-44		0.343049	[0.29-0.39] unit increase	Illumina [7506463] (imputed)	N
1125	chr10	70856851	70856852	rs2229498	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q22.1	SRGN	rs2229498-G		2E-8		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1125	chr10	70871962	70871963	rs116985487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs116985487-T	NR	9E-12		0.0501	[0.036-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr10	70884686	70884687	rs4746818	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	10q22.1	NR	rs4746818-T	0.8874	5E-7		0.0299	[0.018-0.042] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1125	chr10	70889052	70889053	rs4572029	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q22.1	VPS26A	rs4572029-A	0.794818	2E-10		0.0111075	[0.0077-0.0145] unit increase	Affymetrix [12370749]	N
1125	chr10	70905482	70905482	rs59254404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q22.1	NR	rs59254404-I	0.826258	3E-10		0.017761	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1125	chr10	70906915	70906916	rs10823305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs10823305-A	0.765492	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1126	chr10	70931473	70931474	rs1802295	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	10q22.1	VPS26A	rs1802295-A	0.26	4E-8		1.08	[1.05-1.12]	Illumina [568976]	N
1126	chr10	70932190	70932191	rs11552063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11552063-C	NR	1E-70		0.1319	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	70939800	70939801	rs10998624	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	10q22.1	SUPV3L1, VPS26A	rs10998624-A		1E-9	(EA)			Illumina [NR]	N
1126	chr10	70946091	70946101	rs201719697	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	10q22.1	SUPV3L1	rs201719697-A	0.03	3E-8	(left exocanthion-left alare distance)	0.278	NR unit decrease	Illumina [7029494] (imputed)	N
1126	chr10	70951345	70951346	rs11817569	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11817569-C	NR	2E-17		0.0247	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1126	chr10	70964107	70964108	rs117655339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs117655339-T	NR	8E-40		0.1709	[0.15-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	70968047	70968048	rs79860022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q22.1	NR	rs79860022-T	NR	2E-10		0.0431	[0.03-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1126	chr10	70968047	70968048	rs79860022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q22.1	NR	rs79860022-T	NR	1E-10		0.0437	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	70975071	70975071	rs59073566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10q22.1	HKDC1	rs59073566-AT	0.252	3E-10		0.02628658	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1126	chr10	70975380	70975381	rs5030935	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q22.1		rs5030935-C	0.747	4E-10				Affymetrix [10369434] (imputed)	N
1126	chr10	70975896	70975897	rs5030937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q22.1		rs5030937-T	NR	2E-16		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1126	chr10	70975896	70975897	rs5030937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q22.1	NR	rs5030937-T	0.679148	7E-11		0.012905	[0.009-0.0168] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1126	chr10	70975896	70975897	rs5030937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs5030937-T	0.598328	3E-23				Affymetrix, Illumina [23472807] (imputed)	N
1126	chr10	70975915	70975916	rs5030938	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q22.1	HKDC1, HK1	rs5030938-T	0.687037	5E-10		0.020475	[0.014-0.027] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1126	chr10	70976832	70976833	rs10762264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q22.1	NR	rs10762264-A	0.680729	1E-23		0.020403	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1126	chr10	70977307	70977308	rs10998647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q22.1	NR	rs10998647-G	0.687362	2E-8		0.00452963	[0.0028-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
1126	chr10	70977394	70977395	rs10998648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs10998648-C	0.571771	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1126	chr10	70982136	70982136	rs35696875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q22.1		rs35696875-TCA	NR	1E-16		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1126	chr10	70982136	70982136	rs35696875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.1	HKDC1, RP11-227H15.4	rs35696875-TCA	0.692906	3E-18		0.020880517	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1126	chr10	70982136	70982136	rs35696875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q22.1	NR	rs35696875-TCA	0.694449	9E-22		0.0114965	[0.0089-0.0141] unit increase	Affymetrix [16585854] (imputed)	N
1126	chr10	70982136	70982136	rs35696875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q22.1	NR	rs35696875-TCA	0.694449	2E-13		0.0105436	[0.0075-0.0136] unit increase	Affymetrix [16585866] (imputed)	N
1126	chr10	70982940	70982941	rs4746822	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	10q22.1	SUPV3L1, SRGN, HK1, VPS26A, HKDC1	rs4746822-T	0.675	1E-22	(2HPG)	0.28	[NR] unit increase	Illumina [up to 945994] (imputed)	N
1126	chr10	70983628	70983629	rs9663238	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	10q22.1	HKDC1	rs9663238-?	NR	3E-22		0.0024	[0.0018-0.003] unit decrease	Affymetrix [21347608] (imputed)	N
1126	chr10	70983628	70983629	rs9663238	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	10q22.1	HKDC1	rs9663238-?	NR	1E-39		0.0058	[0.0048-0.0068] unit decrease	Affymetrix [21347608] (imputed)	N
1126	chr10	70983935	70983936	rs35199395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q22.1	NR	rs35199395-C	0.693866	7E-9		0.0170314	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1126	chr10	70983935	70983936	rs35199395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.1		rs35199395-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1126	chr10	70985266	70985267	rs2394529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q22.1		rs2394529-C	NR	2E-34		0.026	[0.022-0.03] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1126	chr10	70985266	70985267	rs2394529	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q22.1	HKDC1	rs2394529-C	0.7	2E-14		7.68	z-score increase	Affymetrix [4314223] (imputed)	N
1126	chr10	70985266	70985267	rs2394529	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q22.1	HKDC1	rs2394529-C	0.7	8E-27		10.7	z-score increase	Affymetrix [4312306] (imputed)	N
1126	chr10	70986722	70986723	rs9645500	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q22.1	NR	rs9645500-T	0.32	1E-12		0.025	[0.017-0.033] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1126	chr10	70986722	70986723	rs9645500	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q22.1	HKDC1, HK1	rs9645500-G	0.694429	2E-18		0.024297	[0.019-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1126	chr10	70998000	70998001	rs10762269	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	10q22.1	NR	rs10762269-A	0.52	5E-8		0.020367887	[0.013-0.028] unit decrease	NR [1977400] (imputed)	N
1126	chr10	70998000	70998001	rs10762269	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	10q22.1	NR	rs10762269-A	0.496	4E-8		0.031927217	[0.021-0.043] unit decrease	NR [1977400] (imputed)	N
1126	chr10	70998737	70998738	rs4145930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs4145930-A	NR	1E-12		0.0272	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1126	chr10	71000973	71000974	rs11812911	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11812911-T	NR	7E-13		0.0349	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1126	chr10	71002040	71002041	rs5785903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q22.1	HKDC1	rs5785903-T	0.419841	1E-24		0.023534955	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1126	chr10	71002040	71002041	rs5785903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q22.1	HKDC1	rs5785903-T	0.419737	7E-22		0.0267619	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1126	chr10	71002040	71002041	rs5785903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q22.1	HKDC1	rs5785903-T	0.419731	1E-17		0.019460948	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1126	chr10	71007676	71007677	rs57236635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs57236635-T	NR	4E-30		0.0396	[0.033-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1126	chr10	71007676	71007677	rs57236635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q22.1	NR	rs57236635-T	NR	6E-10		0.021	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	71007973	71007974	rs5785906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q22.1	HKDC1	rs5785906-C	0.57989	2E-17		0.019429034	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1126	chr10	71007973	71007974	rs5785906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q22.1	HKDC1	rs5785906-C	0.579889	7E-17		0.019017419	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1126	chr10	71020931	71020932	rs148886636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs148886636-G	NR	9E-13		0.2706	[0.2-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	71022742	71022743	rs77607834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs77607834-C	NR	9E-10		0.0401	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1126	chr10	71029301	71029302	rs2394534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs2394534-G	NR	4E-39		0.0372	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71054101	71054102	rs117872282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs117872282-T	NR	1E-37		0.0989	[0.084-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71058013	71058014	rs11819086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11819086-T	NR	2E-30		0.0369	[0.031-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71059977	71059978	rs75994173	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	10q22.1		rs75994173-?	NR	3E-6		7.69485	[6.84-8.55]	NR [675173]	N
1127	chr10	71060609	71060610	rs906220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q22.1	NR	rs906220-G	NR	1E-11		0.0304	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71060609	71060610	rs906220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs906220-G	NR	8E-166		0.1257	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71073714	71073715	rs10998710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs10998710-C	NR	7E-14		0.0404	[0.03-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71075337	71075338	rs182898363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q22.1	HK1	rs182898363-C	0.00155099999999997	1E-9		0.17885843	[0.12-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1127	chr10	71075337	71075338	rs182898363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q22.1	HK1	rs182898363-C	0.00155099999999997	1E-11		0.19995211	[0.14-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1127	chr10	71075900	71075901	rs10998712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs10998712-G	NR	2E-14		0.075	[0.056-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71079567	71079568	rs112354651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs112354651-C	NR	8E-28		0.0643	[0.053-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71083382	71083383	rs16926245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.1	NR	rs16926245-G	0.02787	2E-8	(WARS)	0.03661	NR unit increase	Illumina [1671387] (imputed)	N
1127	chr10	71089678	71089679	rs12355201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs12355201-G	NR	1E-46		0.0361	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71089842	71089843	rs4745982	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	10q22.1	HK1	rs4745982-T	0.8726	3E-65		0.0954	[0.084-0.106] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1127	chr10	71091012	71091013	rs10823343	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Hemoglobin A1c levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	10q22.1	HK1	rs10823343-G	0.26	1E-6	(EA)	0.047	[0.027-0.067] unit decrease	Affymetrix [NR] (imputed)	N
1127	chr10	71091012	71091013	rs10823343	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	10q22.1	HK1	rs10823343-A	0.7223	2E-55		0.0325	[0.028-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q22.1		rs16926246-T	NR	4E-13		0.0249	[0.018-0.032] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q22.1		rs16926246-T	NR	2E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	2E-23		0.0352	[0.028-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	4E-104		0.0768	[0.07-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	5E-20		0.0324	[0.026-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	9E-1361		0.2836	[0.28-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	1E-65		0.0651	[0.058-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q22.1	NR	rs16926246-T	NR	6E-17		0.0297	[0.023-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q22.1	HK1	rs16926246-T		1E-273		0.116	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q22.1	HK1	rs16926246-?	NR	2E-18		0.0334	[0.027-0.04] unit decrease	Affymetrix [5701386] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	10q22.1	NR	rs16926246-?	NR	2E-13		0.1600909	[0.12-0.2] unit decrease	Illumina [22871999] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	29483669	Appel EVR	2018-02-26	Eur J Hum Genet	Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population.	Glycated hemoglobin levels	4,049 individuals	6,006 European ancestry individuals	10q22.1	HK1	rs16926246-A	0.15	2E-20		0.2	[0.16-0.24] unit decrease	Illumina [112277]	N
1127	chr10	71093391	71093392	rs16926246	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	10q22.1	HK1	rs16926246-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	10q22.1	HK1	rs16926246-C	0.90	3E-54		0.09	[0.08-0.10] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	10q22.1	HK1	rs16926246-T	NR	2E-11		0.11	[0.08-0.14] g/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1127	chr10	71093391	71093392	rs16926246	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	10q22.1	HK1	rs16926246-T	NR	1E-13		0.33	[0.24-0.42] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	2E-112		0.0828	[0.076-0.09] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	2E-87		0.0646	[0.058-0.071] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	1E-98		0.0798	[0.072-0.087] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	3E-78		0.0707	[0.063-0.078] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	4E-1745		0.3256	[0.32-0.33] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	3E-289		0.1098	[0.1-0.12] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q22.1		rs17476364-C	NR	1E-282		0.1115	[0.11-0.12] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	5,173 European male ancestry individuals	NA	10q22.1		rs17476364-C	NR	2E-8		1.129	[0.74-1.52] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q22.1		rs17476364-T	0.89	2E-92		0.36	[-0.39--0.32] % decrease	Affymetrix [NR] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	10q22.1	HK1	rs17476364-T	0.9011	1E-314		0.0858	[0.081-0.09] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.108	4E-14		0.043	[0.032-0.054] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108802	7E-169		0.09962675	[0.093-0.107] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108807	8E-225		0.115151115	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108735	3E-23		0.035447814	[0.028-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.10876	1E-115		0.08105299	[0.074-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108814	1E-9		0.021963809	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108696	3E-159		0.09707404	[0.09-0.104] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108783	1E-59		0.058845792	[0.052-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108777	1E-142		0.0940374	[0.088-0.101] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108777	6E-110		0.07940427	[0.072-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.10878	6E-40		0.047658343	[0.041-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108749	2E-152		0.09408786	[0.087-0.101] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108757	6E-195		0.10656795	[0.1-0.114] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108778	1E-368		0.14655124	[0.14-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q22.1	HK1	rs17476364-C	0.108758	5E-372		0.14714691	[0.14-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs17476364-T	0.896569	1E-32				Affymetrix, Illumina [22063850] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q22.1	NR	rs17476364-T	0.892832	6E-36		0.038198	[0.032-0.044] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.10294	1E-141				Affymetrix, Illumina [24332387] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.106734	8E-146		0.077124	[0.071-0.083] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.106471	5E-11		0.019617	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.102938	1E-210				Affymetrix, Illumina [24246363] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.10674	1E-211		0.091405	[0.086-0.097] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.104331	1E-144				Affymetrix, Illumina [20825802] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q22.1	NR	rs17476364-C	0.108072	7E-148		0.080275	[0.074-0.086] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q22.1	HK1	rs17476364-T	0.891668	9E-11		0.0217849	[0.015-0.028] unit increase	Affymetrix [NR] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q22.1	HK1	rs17476364-T	0.891606	3E-10		0.0211293	[0.015-0.028] unit increase	Affymetrix [NR] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	10q22.1		rs17476364-?	0.08	1E-6		0.3633	[0.22-0.51] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	10q22.1		rs17476364-?	0.0946	9E-19		0.126	[0.098-0.154] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	10q22.1		rs17476364-?	0.0651	6E-10		0.14	[0.096-0.184] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	10q22.1		rs17476364-?	0.08	1E-27		0.1301	[0.11-0.15] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	10q22.1		rs17476364-?	0.0946	1E-17		0.361	[0.28-0.44] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	10q22.1		rs17476364-?	0.0651	7E-9		0.3816	[0.25-0.51] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	10q22.1		rs17476364-?	0.08	4E-26		0.3706	[0.3-0.44] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q22.1		rs17476364-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q22.1		rs17476364-?	NR	5E-125				NR [~ 8900000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q22.1		rs17476364-?	NR	5E-128				NR [~ 8900000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1104	3E-72		0.1032995	[0.092-0.115] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1104	2E-96		0.1197591	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	2E-11		0.03797962	[0.027-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	2E-48		0.0833013	[0.072-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	7E-55		0.08811442	[0.077-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	4E-44		0.07898236	[0.068-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1104	3E-53		0.08805049	[0.077-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1104	3E-69		0.1009026	[0.09-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	1E-156		0.151392	[0.14-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71094503	71094504	rs17476364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	10q22.1	HK1	rs17476364-C	0.1103	8E-159		0.1517784	[0.14-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71098350	71098351	rs75743765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs75743765-A	NR	4E-28		0.0469	[0.038-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q22.1		rs72805692-?	NR	3E-9		0.00833393	[0.0056-0.0111] unit increase	NR [NR]	N
1127	chr10	71099108	71099109	rs72805692	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	10q22.1		rs72805692-A	0.10389999999999999	3E-25		0.2682	[0.22-0.32] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	10q22.1		rs72805692-A	0.08299999999999996	5E-44		0.2647	[0.23-0.3] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	10q22.1		rs72805692-A	0.0635	3E-20		0.2628	[0.21-0.32] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q22.1		rs72805692-G	0.11873	2E-7		0.054727	[0.034-0.075] unit increase	Affymetrix [15580782] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	10q22.1	HK1	rs72805692-A	0.9293	2E-22		0.0859	[0.069-0.102] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	10q22.1	HK1	rs72805692-?	NR	5E-11		1.8	NR unit increase	NR [14100000] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	10q22.1	HK1	rs72805692-?	NR	5E-8				NR [14100000] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	10q22.1		rs72805692-G	NR	3E-9		0.39	[0.25-0.53] unit increase	Illumina [97506867]	N
1127	chr10	71099108	71099109	rs72805692	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	10q22.1		rs72805692-G	NR	3E-25		0.13	[0.11-0.15] unit increase	Illumina [110351653]	N
1127	chr10	71099108	71099109	rs72805692	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	10q22.1		rs72805692-G	NR	5E-26		0.39	[0.31-0.47] unit increase	Illumina [110396782]	N
1127	chr10	71099108	71099109	rs72805692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q22.1	NR	rs72805692-G	0.113894	2E-482		0.136402	[0.13-0.14] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q22.1	HK1	rs72805692-A	0.884869	9E-10		0.0183089	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	10q22.1	HK1	rs72805692-?	NR	6E-22	(Hispanic/Latino)	0.2683721	[0.21-0.32] unit decrease	Illumina [22871999] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	10q22.1	HK1	rs72805692-?	NR	1E-21		0.265	[0.21-0.32] unit decrease	Illumina [22871999] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	10q22.1	HK1	rs72805692-G	0.066	6E-26		0.1	[0.08-0.12] % decrease	Illumina [11510031] (imputed)	N
1127	chr10	71099108	71099109	rs72805692	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q22.1	HK1	rs72805692-G	0.1169	1E-11		0.03743759	[0.027-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1127	chr10	71099887	71099888	rs10159477	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q22.1	HK1	rs10159477-A	0.16	4E-20	(EA, Hgb)	0.087	[0.067-0.107] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1127	chr10	71099912	71099913	rs7072268	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	10q22.1	NR	rs7072268-?	NR	8E-6		0.06124937	[0.034-0.088] unit decrease	Illumina [22871999] (imputed)	N
1127	chr10	71099912	71099913	rs7072268	19096518	Pare G	2008-12-19	PLoS Genet	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry females	455 European ancestry individuals	10q22.1	HK1	rs7072268-A	0.50	2E-25		0.05	[NR] % increase	Illumina [337343]	N
1127	chr10	71100725	71100726	rs16926249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs16926249-G	0.147868	9E-361				Affymetrix, Illumina [24558453] (imputed)	N
1127	chr10	71100919	71100920	rs73265749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs73265749-T	0.147616	2E-355				Affymetrix, Illumina [24653286] (imputed)	N
1127	chr10	71102974	71102975	rs11597418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11597418-G	NR	7E-24		0.0494	[0.04-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71106963	71106964	rs113041162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q22.1	NR	rs113041162-A	0.148695	9E-354		0.104956	[0.1-0.11] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1127	chr10	71108148	71108149	rs11596193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11596193-A	NR	1E-9		0.0314	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71111665	71111666	rs77602252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs77602252-C	NR	8E-13		0.0362	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71113987	71113988	rs11596587	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	10q22.1	HK1	rs11596587-T	0.1	8E-8		1.22	[1.14-1.31]	NR [~ 8000000] (imputed)	N
1127	chr10	71134933	71134934	rs117959945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs117959945-G	NR	3E-16		0.0755	[0.057-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr10	71138132	71138133	rs10128330	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs10128330-T	NR	2E-109		0.133	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71144255	71144256	rs5030915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs5030915-G	NR	5E-16		0.067	[0.051-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71144323	71144324	rs2305196	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	10q22.1	NR	rs2305196-?	NR	3E-6	(TAUTHhind)	0.198	[NR] unit decrease	Illumina [NR] (imputed)	N
1127	chr10	71144323	71144324	rs2305196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q22.1		rs2305196-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1127	chr10	71145485	71145486	rs1867971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs1867971-G	NR	3E-25		0.0305	[0.025-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr10	71152090	71152091	rs2278745	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	10q22.1	HK1	rs2278745-C	0.602	3E-7		0.394833	[0.25-0.54] unit decrease	Illumina [at least 520076] (imputed)	N
1127	chr10	71152090	71152091	rs2278745	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	10q22.1	HK1	rs2278745-C	0.602	6E-6		0.395	[0.25-0.54] unit decrease	Illumina [at least 520076] (imputed)	N
1127	chr10	71158001	71158002	rs116924736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs116924736-G	NR	2E-18		0.0627	[0.049-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr10	71175608	71175609	rs10998765	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	10q22.1	NR	rs10998765-?	NR	4E-6		1.1018404	[1.06-1.15]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1128	chr10	71176919	71176920	rs11595348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs11595348-G	NR	1E-14		0.0241	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1128	chr10	71176919	71176920	rs11595348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q22.1	NR	rs11595348-G	NR	3E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr10	71181370	71181371	rs36054387	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs36054387-?	NR	3E-11				Affymetrix [NR] (imputed)	N
1128	chr10	71192468	71192469	rs12411719	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12411719-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71201714	71201715	rs79980322	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs79980322-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1128	chr10	71202995	71202996	rs34377151	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs34377151-?	NR	1E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71204634	71204635	rs12412896	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12412896-?	NR	9E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71205503	71205504	rs12413268	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12413268-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1128	chr10	71208323	71208324	rs10998786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs10998786-G	NR	3E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1128	chr10	71212090	71212091	rs12413873	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12413873-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1128	chr10	71213649	71213650	rs7090788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs7090788-A	NR	2E-20		0.0418	[0.033-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr10	71214469	71214470	rs35353201	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs35353201-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71214668	71214669	rs12414678	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12414678-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71214728	71214729	rs12414706	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs12414706-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71215224	71215225	rs61848384	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs61848384-?	NR	8E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216133	71216134	rs34618077	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs34618077-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216267	71216268	rs35355528	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs35355528-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216309	71216310	rs59262400	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs59262400-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216344	71216345	rs57028689	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs57028689-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216454	71216455	rs57805780	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs57805780-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216568	71216569	rs61848389	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs61848389-?	NR	4E-12				Affymetrix [NR] (imputed)	N
1128	chr10	71216759	71216760	rs56979471	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs56979471-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216847	71216848	rs61086796	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs61086796-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71216879	71216880	rs60677596	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs60677596-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71217064	71217065	rs59145567	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs59145567-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71217089	71217090	rs60110374	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs60110374-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71217130	71217131	rs57677741	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q22.1		rs57677741-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1128	chr10	71218645	71218646	rs17490626	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	10q22.1	TSPAN15	rs17490626-G	0.8782	3E-7		1.165	[1.098- 1.236]	Illumina [at least 560000] (imputed)	N
1128	chr10	71240573	71240574	rs7917677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q22.1	TSPAN15	rs7917677-C	0.464678	1E-12		0.015952196	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr10	71242428	71242429	rs2052964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.1	TSPAN15	rs2052964-T	0.462844	1E-17		0.019113902	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr10	71243031	71243032	rs10998832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q22.1	TSPAN15	rs10998832-T	0.463155	5E-15		0.017572938	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr10	71243033	71243034	rs10823395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q22.1	TSPAN15	rs10823395-A	0.463587	1E-15		0.017935304	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr10	71243033	71243034	rs10823395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.1	TSPAN15	rs10823395-A	0.463557	6E-18		0.019288758	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr10	71243033	71243034	rs10823395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs10823395-A	0.424266	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
1128	chr10	71243033	71243034	rs10823395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q22.1	NR	rs10823395-A	0.462726	5E-11		0.012696	[0.0089-0.0165] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1128	chr10	71245275	71245276	rs78707713	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	10q22.1	TSPAN15	rs78707713-T	0.875	2E-55		1.2741764	[1.24-1.31]	Affymetrix [up to 34000000] (imputed)	N
1128	chr10	71245275	71245276	rs78707713	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	10q22.1	TSPAN15	rs78707713-T	NR	3E-30		1.2048193	[1.16-1.23]	Affymetrix, Illumina [12923718] (imputed)	N
1128	chr10	71245275	71245276	rs78707713	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	10q22.1	NR	rs78707713-?	NR	3E-30		0.1819	[0.15-0.21] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1128	chr10	71245275	71245276	rs78707713	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	10q22.1	TSPAN15	rs78707713-?	NR	2E-7		1.22		Affymetrix [9155762] (imputed)	N
1128	chr10	71245275	71245276	rs78707713	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	10q22.1	TSPAN15	rs78707713-T	0.878	2E-16		1.31	[1.23-1.40]	Affymetrix, Illumina [6751884] (imputed)	N
1128	chr10	71254967	71254968	rs76332275	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q22.1	TSPAN15	rs76332275-T	NR	4E-6	(G_Faecalitalea_HB)	0.674183	[0.39-0.96] unit increase	Illumina [7711310] (imputed)	N
1128	chr10	71256207	71256208	rs4746856	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.1	NEUROG3	rs4746856-?	NR	2E-6	(TAG 56:5)	0.30242702	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1128	chr10	71263263	71263264	rs1227969	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	10q22.1	TSPAN15	rs1227969-?	NR	6E-7				Affymetrix, Illumina [~ 1300000]	N
1128	chr10	71273356	71273357	rs1955163	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q22.1	NR	rs1955163-G	0.5105	5E-9		0.0512	[0.034-0.068] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1128	chr10	71273356	71273357	rs1955163	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q22.1		rs1955163-A	0.495327916	3E-9		0.95232046	[0.937047002-0.967842853]	Illumina [8919992] (imputed)	N
1128	chr10	71273356	71273357	rs1955163	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q22.1	TSPAN15, NEUROG3	rs1955163-G	0.541	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1128	chr10	71273356	71273357	rs1955163	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q22.1	VPS26A	rs1955163-G	0.51	3E-9		1.05	1.04-1.07	Illumina [12557761] (imputed)	N
1128	chr10	71293703	71293704	rs12416010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs12416010-T	NR	2E-20		0.0312	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr10	71303320	71303321	rs12357239	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q22.1	TSPAN15, NEUROG3	rs12357239-?	NR	8E-9		0.018439142	[0.012-0.025] unit increase	Illumina [27896057] (imputed)	N
1129	chr10	71312022	71312023	rs10823406	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	10q22.1	NR	rs10823406-?		9E-6	(African)			Illumina [~ 5190000] (imputed)	N
1129	chr10	71314705	71314706	rs537982442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q22.1		rs537982442-C	NR	2E-17		0.2714	[0.21-0.33] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1129	chr10	71321278	71321279	rs177045	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.1	NR	rs177045-G	0.3238	2E-15		0.0389	[0.029-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1129	chr10	71321278	71321279	rs177045	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q22.1	NR	rs177045-G	0.4055	3E-17		0.0335	[0.026-0.041] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1129	chr10	71321278	71321279	rs177045	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.1	NEUROG3	rs177045-G	0.3155	7E-18		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1129	chr10	71321657	71321658	rs61850200	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.1	NEUROG3	rs61850200-C	0.2768	7E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1129	chr10	71332203	71332204	rs4536103	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	10q22.1	NEUROG3	rs4536103-?	NR	8E-6	(Multiple-adjusted)			Illumina [32817]	N
1129	chr10	71332300	71332301	rs41277236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q22.1		rs41277236-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1129	chr10	71332300	71332301	rs41277236	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.1	NEUROG3	rs41277236-T	0.0431	2E-6		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1129	chr10	71333782	71333783	rs11592899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.1		rs11592899-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1129	chr10	71347310	71347311	rs549498088	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.1	NEUROG3	rs549498088-T	0.006	5E-7		1.56	[1.31-1.86]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1129	chr10	71360760	71360761	rs1947740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.1	NR	rs1947740-C	NR	6E-13		0.0207	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1129	chr10	71375427	71375428	rs7074498	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	10q22.1	NR	rs7074498-T	0.009862	2E-6		0.7278	[0.43-1.03] unit increase	Illumina [10677593] (imputed)	N
1129	chr10	71375788	71375789	rs4553261	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	10q22.1	intergenic	rs4553261-?		9E-6				Affymetrix, Illumina [1348798]	N
1129	chr10	71411205	71411206	rs12771265	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	10q22.1	C10orf35	rs12771265-?	NR	1E-6	(Indian)			Illumina [551825]	N
1130	chr10	71452284	71452285	rs2812533	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q22.1	C10orf35	rs2812533-C		5E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
1130	chr10	71465927	71465928	rs2642587	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	10q22.1	NEUROG3	rs2642587-G	NR	8E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 13000000] (imputed)	N
1130	chr10	71466577	71466578	rs2642588	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.1	NEUROG3	rs2642588-G	0.7016	2E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1130	chr10	71469513	71469514	rs2616132	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q22.1	FAM241B	rs2616132-A	0.474257342929455	7E-9		0.0455	[0.03-0.061] unit increase	NR [5035015] (imputed)	N
1130	chr10	71474363	71474364	rs116902282	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (number of drugs prescribed)	3,452 European ancestry individuals	NA	10q22.1	C10orf35, COL13A1	rs116902282-?		2E-7		0.49	[0.34-0.64] unit increase	NR [7395460] (imputed)	N
1130	chr10	71495725	71495726	rs10998941	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	10q22.1	COL13A1	rs10998941-?		7E-6		1.22	unit increase	Illumina [4751257] (imputed)	N
1130	chr10	71500896	71500897	rs79538733	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q22.1	Intergenic	rs79538733-A	NR	5E-7	(between families)	5.015	unit increase	Affymetrix [up to 15107142] (imputed)	N
1130	chr10	71504787	71504788	rs10762308	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	2,443 European ancestry twins	NA	10q22.1	RPL5P26	rs10762308-G	0.51	8E-6		0.1	[0.022-0.178] unit increase	Illumina [4001140] (imputed)	N
1130	chr10	71528723	71528724	rs2252421	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	10q22.1	NEUROG3, COL13A1	rs2252421-G	0.25	4E-6	(Tangent line angle of er3)	0.013	[NR] unit decrease	Affymetrix [311944]	N
1130	chr10	71528929	71528930	rs10998957	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	10q22.1	RPL5P26	rs10998957-C	0.1241	4E-6		1.647	[1.331-2.037]	Affymetrix, Illumina [14074516] (imputed)	N
1130	chr10	71538291	71538292	rs4746003	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	10q22.1	RP11-242G20.2	rs4746003-?	0.25	6E-6		1.3	[NR]	Illumina [1847262] (imputed)	N
1130	chr10	71543167	71543168	rs2642575	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	10q22.1	COL13A1	rs2642575-?	NR	5E-6	(Southern European)	1.11	[NR]	Illumina [546271]	N
1130	chr10	71559722	71559723	rs2642608	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q22.1	COL13A1	rs2642608-T	0.27	4E-9		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1130	chr10	71559722	71559723	rs2642608	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q22.1	COL13A1	rs2642608-T	0.2769	1E-9		0.4485	[0.3-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1130	chr10	71560395	71560396	rs9645504	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10q22.1	NR	rs9645504-C	NR	7E-6	(random effect)	1.07	NR	NR [6904914] (imputed)	N
1131	chr10	71580119	71580120	rs17497526	23793441	Davis MF	2013-06-21	Hum Genet	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls	NA	10q22.1	COL13A1	rs17497526-G	0.15	6E-7				Affymetrix [622812]	N
1131	chr10	71583197	71583198	rs7077164	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10q22.1	COL13A1	rs7077164-A	0.30	7E-6		0.67	[NR] unit increase	Illumina [324623]	N
1131	chr10	71588503	71588504	rs1227756	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	10q22.1	COL13A1	rs1227756-G	0.46	2E-7		0.57	[NR] unit increase	Illumina [324623]	N
1131	chr10	71610048	71610049	rs7096311	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q22.1	COL13A1	rs7096311-A	0.19	3E-9		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1131	chr10	71640837	71640838	rs77040403	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q22.1	NR	rs77040403-?	NR	4E-6	(Native Hawaiian)	0.7427	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1131	chr10	71669952	71669953	rs12412836	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	10q22.1	COL13A1	rs12412836-?	NR	4E-6	(adjusted for dose, GFR & AST)	0.75	unit decrease (EA)	Illumina [610255]	N
1131	chr10	71681556	71681557	rs144841621	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	10q22.1	NR	rs144841621-C		4E-6		0.518	[0.29-0.74] SD units decrease	NR [10700000] (imputed)	N
1131	chr10	71689644	71689645	rs2763339	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Early childhood aggressive behavior	15,668 European ancestry individuals	NA	10q22.1	COL13A1	rs2763339-T	0.36	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1132	chr10	71701510	71701511	rs3793821	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.1	NR	rs3793821-?	NR	5E-7				Affymetrix [NR]	N
1132	chr10	71704750	71704751	rs3843585	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	10q22.1	COL13A1	rs3843585-T	0.6189	3E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1132	chr10	71709864	71709865	rs180822335	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	10q22.1	COL13A1	rs180822335-C	0.027	7E-7	(Imidazole and triazole derivatives [D01AC])	3.8		Illumina [16500000] (imputed)	N
1132	chr10	71733320	71733321	rs4109293	29654602	Laville V	2018-04-13	Exp Dermatol	A Genome-Wide Association Study identifies new genes potentially associated with eyelid sagging.	Upper eyelid sagging severity	29 French ancestry individuals with grade 0-I sagging, 107 French ancestry individuals with grade II sagging, 192 French ancestry individuals with grade III sagging, 174 French ancestry individuals with grade IV-V sagging	NA	10q22.1	Intergenic	rs4109293-?	NR	6E-7		2.3809524	[1.69-3.33]	Illumina [795063]	N
1132	chr10	71736471	71736472	rs10509310	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q22.1	NR	rs10509310-?	NR	5E-6		1.5	[1.41-1.59]	Illumina [539000] (imputed)	N
1132	chr10	71749674	71749675	rs113808744	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q22.1	NR	rs113808744-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1133	chr10	71848433	71848434	rs16927253	29654602	Laville V	2018-04-13	Exp Dermatol	A Genome-Wide Association Study identifies new genes potentially associated with eyelid sagging.	Upper eyelid sagging severity	29 French ancestry individuals with grade 0-I sagging, 107 French ancestry individuals with grade II sagging, 192 French ancestry individuals with grade III sagging, 174 French ancestry individuals with grade IV-V sagging	NA	10q22.1	H2AFY2	rs16927253-?	NR	2E-9		4.0	[2.56-6.25]	Illumina [795063]	N
1133	chr10	71875744	71875745	rs16927332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	10q22.1	NR	rs16927332-?	NR	1E-6		0.0973	[0.058-0.137] unit increase	Illumina [at least 560000] (imputed)	N
1133	chr10	71880300	71880301	rs139479025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q22.1	AIFM2	rs139479025-C	0.999	1E-6	(AA)	0.374	unit increase	Illumina [NR] (imputed)	N
1133	chr10	71880857	71880858	rs10999147	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	10q22.1	AIFM2	rs10999147-A	0.939	4E-8				NR [509413]	N
1133	chr10	71881207	71881208	rs146390687	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	10q22.1	NR	rs146390687-G		8E-6		0.5768	[0.31-0.84] SD units decrease	NR [10700000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Waist-to-hip ratio adjusted for BMI	458,349 European ancestry individuals	NA	10q22.1		rs41277978-?	NR	2E-9		0.0720176	[0.048-0.096] unit increase	NR [9800000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	10q22.1		rs41277978-?	NR	1E-8		0.0658386	[0.042-0.09] unit increase	NR [9800000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	10q22.1		rs41277978-?	NR	6E-12		0.0773283	[0.054-0.101] unit decrease	NR [9800000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.1	NR	rs41277978-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q22.1		rs41277978-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1133	chr10	71883835	71883836	rs41277978	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q22.1	NR	rs41277978-A	0.0072	5E-10		0.073	[0.05-0.096] unit increase	NR [~ 27400000] (imputed)	N
1134	chr10	72002498	72002499	rs12771902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q22.1		rs12771902-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1134	chr10	72005189	72005190	rs10823500	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q22.1	PPA1, RP11-367H5.8, NPFFR1	rs10823500-G	0.3708543	2E-18	(EA, Inorganic pyrophosphatase)	0.4013	[0.31-0.49] unit increase	Affymetrix [509946]	N
1134	chr10	72025953	72025954	rs3812696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10q22.1	NR	rs3812696-A	NR	1E-9		0.03	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr10	72030897	72030898	rs138809958	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	10q22.1	NPFFR1	rs138809958-C	0.01719016	2E-6		1.43228	[1.236127037-1.659559011]	Illumina [10439017] (imputed)	N
1134	chr10	72034061	72034062	rs10823504	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q22.1	NPFFR1	rs10823504-G	0.936321	3E-8		0.0158621	[0.01-0.021] unit increase	Affymetrix [12370749]	N
1134	chr10	72040804	72040805	rs41322152	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	10q22.1	NPFFR1	rs41322152-C	0.012	8E-6		2.52	[1.68-3.79]	Affymetrix [444044]	N
1134	chr10	72046859	72046860	rs113793030	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	10q22.1	NPFFR1, LRRC20	rs113793030-T	0.01	8E-8	(EA)	0.3695	[0.24-0.5] unit increase	Illumina [~ 9000000] (imputed)	N
1134	chr10	72046859	72046860	rs113793030	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	10q22.1	NPFFR1, LRRC20	rs113793030-T	0.01	3E-7		0.3462	[0.22-0.48] unit increase	Illumina [~ 9000000] (imputed)	N
1134	chr10	72052711	72052712	rs10823514	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	10q22.1	NR	rs10823514-T	0.281233	3E-6		0.6752977	[0.41-0.94] unit decrease	Illumina [at least 621854] (imputed)	N
1135	chr10	72114377	72114378	rs4747011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.1		rs4747011-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1135	chr10	72114377	72114378	rs4747011	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		10q22.1	LRRC20	rs4747011-?	NR	9E-10	(Strength - L-transverse temporal)			Illumina [428287]	N
1135	chr10	72128056	72128057	rs9731813	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	10q22.1	intergenic	rs9731813-A	NR	7E-6		27.618	[15.56-39.68] unit decrease	Illumina [6995140] (imputed)	N
1135	chr10	72131480	72131481	rs142527895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT10	5,363 Icelandic ancestry individuals	NA	10q22.1		rs142527895-C	0.02042	8E-12		0.0973359	[0.069-0.125] unit increase	Illumina [7506463] (imputed)	N
1136	chr10	72269483	72269484	rs4746045	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q22.1	PALD1	rs4746045-?		9E-6				Illumina [4322238] (imputed)	N
1136	chr10	72288301	72288302	rs10823559	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	10q22.1	PALD1	rs10823559-C	0.4255	1E-6		4.63		Affymetrix [757439]	N
1136	chr10	72328348	72328349	rs79062978	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q22.1	NR	rs79062978-A	0.0328389	8E-9		0.155785	[0.1-0.21] unit decrease	Affymetrix [21375087] (imputed)	N
1136	chr10	72332439	72332440	rs10999409	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	10q22.1	PRF1	rs10999409-T	0.45	5E-6		1.3	[1.16-1.45]	Illumina [457251]	N
1136	chr10	72332725	72332726	rs182049218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10q22.1	PALD1	rs182049218-T	0.034	1E-9		0.0626506	[0.042-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
1137	chr10	72354022	72354023	rs74761295	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q22.1	NR	rs74761295-T	0.082	2E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1137	chr10	72355311	72355312	rs67848150	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q22.1	NR	rs67848150-A	0.199114	4E-9		0.073291	[0.049-0.097] unit decrease	Affymetrix [21375087] (imputed)	N
1137	chr10	72360386	72360387	rs35947132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	10q22.1		rs35947132-G	0.96	3E-11				Affymetrix [10369434] (imputed)	N
1137	chr10	72360386	72360387	rs35947132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10q22.1		rs35947132-G	0.96	5E-9				Affymetrix [10369434] (imputed)	N
1137	chr10	72360386	72360387	rs35947132	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q22.1		rs35947132-G	0.96	2E-9				Affymetrix [10369434] (imputed)	N
1137	chr10	72360386	72360387	rs35947132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.1	PRF1	rs35947132-A	0.040212	1E-27		0.061554436	[0.05-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr10	72363844	72363845	rs35401316	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	10q22.1	PRF1	rs35401316-T	NR	3E-6		4.646	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
1137	chr10	72365985	72365985	rs113751475	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q22.1	NR	rs113751475-C	0.330572	3E-8		0.0599047	[0.039-0.08] unit decrease	Affymetrix [21375087] (imputed)	N
1137	chr10	72369448	72369449	rs185189901	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	10q22.1	NR	rs185189901-A	0.9854	5E-6		0.4547	[0.26-0.65] unit decrease	Illumina [8348463] (imputed)	N
1137	chr10	72376403	72376404	rs80069861	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	10q22.1	intergenic	rs80069861-A	NR	3E-6		4.664	NR z-score increase	Affymetrix, Illumina [up to 9001799] (imputed)	N
1137	chr10	72378488	72378489	rs78325861	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	10q22.1	PRF1	rs78325861-G	0.039037	2E-11		0.2820823	[0.2-0.36] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1137	chr10	72378488	72378489	rs78325861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q22.1		rs78325861-G	0.040621	2E-13		0.04135327	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1137	chr10	72379248	72379249	rs771712694	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q22.1	NR	rs771712694-T	0.013	6E-6		1.2	[0.67-1.73] unit decrease	Illumina [9469131] (imputed)	N
1137	chr10	72382868	72382869	rs142239370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q22.1		rs142239370-C	NR	4E-19		0.0541	[0.042-0.066] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1137	chr10	72382868	72382869	rs142239370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q22.1		rs142239370-C	0.040197	1E-21		0.05370436	[0.043-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr10	72386739	72386740	rs10999439	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q22.1	NR	rs10999439-?	NR	4E-7	(female)	0.19627	[0.12-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1137	chr10	72386739	72386740	rs10999439	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q22.1	NR	rs10999439-?	NR	1E-10		0.15315	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1137	chr10	72407788	72407789	rs747141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	10q22.1		rs747141-A	NR	2E-9		0.0654	[0.044-0.087] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1137	chr10	72409023	72409024	rs117853866	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	10q22.1		rs117853866-A	0.040329	4E-7		1.6843524	NR	Affymetrix [7846216] (imputed)	N
1137	chr10	72412859	72412859	rs68185000	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.1		rs68185000-?	NR	2E-9		0.0145124	[0.0098-0.0192] unit decrease	Affymetrix [20259828] (imputed)	N
1137	chr10	72413826	72413827	rs10999456	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q22.1		rs10999456-T	0.27	1E-13				NR [NR] (imputed)	N
1137	chr10	72413826	72413827	rs10999456	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q22.1		rs10999456-T	0.27	2E-21		0.016	% increase	NR [NR] (imputed)	N
1137	chr10	72422123	72422124	rs638523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q22.1		rs638523-A	0.48	9E-17		8.32	z score increase	Affymetrix [9061022] (imputed)	N
1137	chr10	72422123	72422124	rs638523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q22.1		rs638523-A	0.48	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
1137	chr10	72422123	72422124	rs638523	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q22.1	NR	rs638523-A	0.4633	1E-10				NR [9056863] (imputed)	N
1137	chr10	72432046	72432047	rs68049170	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.1	ADAMTS14	rs68049170-A	0.2764	3E-34		0.0259	[0.022-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1137	chr10	72432046	72432047	rs68049170	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q22.1	NR	rs68049170-A	0.277006	2E-21		0.0733892	[0.058-0.088] unit decrease	Affymetrix [17914406] (imputed)	N
1137	chr10	72432046	72432047	rs68049170	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.1	NR	rs68049170-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1137	chr10	72433024	72433025	rs34616741	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q22.1	NR	rs34616741-A	0.305418	8E-11		0.0706506	[0.049-0.092] unit decrease	Affymetrix [21375087] (imputed)	N
1137	chr10	72433203	72433204	rs34821335	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q22.1	ADAMTS14	rs34821335-G	0.27082	3E-14	(females)	0.02294	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1137	chr10	72433203	72433204	rs34821335	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q22.1	ADAMTS14	rs34821335-G	0.27082	1E-10		0.01614	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1137	chr10	72433203	72433204	rs34821335	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q22.1	ADAMTS14	rs34821335-G	0.27082	9E-14	(females)	0.02277	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1137	chr10	72433203	72433204	rs34821335	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q22.1	ADAMTS14	rs34821335-G	0.27082	3E-8		0.01432	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1137	chr10	72433203	72433203	rs767673767	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q22.1	NR	rs767673767-G	0.275398	9E-13		0.0790831	[0.058-0.101] unit decrease	Affymetrix [21375087] (imputed)	N
1137	chr10	72462993	72462994	rs17600642	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	10q22.1	NR	rs17600642-?	NR	5E-6	(addtive)			Affymetrix [NR]	N
1137	chr10	72465487	72465488	rs4746059	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10q22.1	NR	rs4746059-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
1137	chr10	72481094	72481095	rs72814570	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex and smoking status)	3,906 Finnish ancestry individuals	NA	10q22.1		rs72814570-A	0.23	1E-6				Illumina [NR] (imputed)	N
1138	chr10	72483009	72483010	rs1816002	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	10q22.1	NR	rs1816002-G	0.46	8E-6	(females)	2.08	[NR] kg increase	Illumina [318237]	N
1138	chr10	72488238	72488239	rs4747090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.1		rs4747090-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1138	chr10	72494777	72494778	rs12765664	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q22.1	ADAMTS14	rs12765664-?	NR	5E-6		2.9411764		Illumina [6778521] (imputed)	N
1138	chr10	72494777	72494778	rs12765664	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q22.1		rs12765664-?	NR	6E-6		2.5	[1.64-3.85]	Illumina [6778521] (imputed)	N
1138	chr10	72498296	72498297	rs79999320	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q22.1	ADAMTS14	rs79999320-G	0.9132	4E-11		0.0216129	[0.015-0.028] unit decrease	NR [13737936] (imputed)	N
1138	chr10	72500507	72500508	rs7093347	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q22.1	ADAMTS14	rs7093347-?	NR	4E-6		3.448276		Illumina [6778521] (imputed)	N
1138	chr10	72500762	72500763	rs10823607	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	10q22.1	ADAMTS14	rs10823607-T	0.15	5E-6		0.19	[0.11-0.27] unit decrease	Illumina [2380486] (imputed)	N
1138	chr10	72506157	72506158	rs10823610	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q22.1	ADAMTS14	rs10823610-A	0.56	1E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1138	chr10	72517836	72517837	rs6480463	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide behavior	577 European ancestry cases, 1,233 European ancestry controls	NA	10q22.1	ADAMTS14	rs6480463-G	0.38	2E-6		1.415	[1.227-1.631]	Illumina [794207]	N
1138	chr10	72527516	72527517	rs12761224	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	10q22.1	NR	rs12761224-?	NR	6E-6		1.3861	[NR]	Illumina [NR] (imputed)	N
1138	chr10	72549315	72549316	rs74542309	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10q22.1	TBATA	rs74542309-A	0.1481	6E-6				Illumina [4404269] (imputed)	N
1138	chr10	72565235	72565236	rs7093309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q22.1		rs7093309-A	0.308695	1E-17		0.02092723	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1138	chr10	72569299	72569299	rs142746579	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q22.1	intergenic	rs142746579-CCCCAGGGCAT	NR	4E-6				Illumina [up to 11995908] (imputed)	N
1138	chr10	72569299	72569299	rs142746579	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q22.1	intergenic	rs142746579-CCCCAGGGCAT	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1138	chr10	72571553	72571554	rs10762407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q22.1	SGPL1	rs10762407-T	0.312687	2E-14		0.018580917	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1138	chr10	72607218	72607219	rs55860137	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCBD1	5,360 Icelandic ancestry individuals	NA	10q22.1		rs55860137-G	0.04597	1E-16		0.369585	[0.28-0.46] unit decrease	Illumina [7506463] (imputed)	N
1139	chr10	72614895	72614896	rs72818110	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	PCBD1	rs72818110-A	0.950625	8E-11	(PCBD1, 11313_100_3)	0.37403148	[0.26-0.49] unit increase	Illumina [> 1000000] (imputed)	N
1139	chr10	72625740	72625741	rs10823631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.1	RP11-432J9.5	rs10823631-G	0.326013	6E-12		0.01627304	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr10	72631236	72631237	rs852121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q22.1	SGPL1	rs852121-A	0.623653	2E-9		0.013736249	[0.0093-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr10	72631236	72631237	rs852121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs852121-G	0.379516	8E-11				Affymetrix, Illumina [22063850] (imputed)	N
1139	chr10	72631236	72631237	rs852121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q22.1	NR	rs852121-G	0.376955	3E-13		0.014162	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1139	chr10	72631236	72631237	rs852121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q22.1		rs852121-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1139	chr10	72635143	72635145	rs3998628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q22.1	SGPL1	rs3998628-A	0.325687	2E-9		0.014369847	[0.0097-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr10	72635143	72635145	rs3998628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.1	SGPL1	rs3998628-A	0.325716	2E-14		0.01819862	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr10	72635143	72635145	rs3998628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.1	SGPL1	rs3998628-A	0.325707	9E-14		0.017660204	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr10	72644377	72644378	rs10999573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	10q22.1	PCBD1	rs10999573-G	0.3271	3E-10		0.02389448	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr10	72648335	72648336	rs827237	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.1	NR	rs827237-C	0.795	4E-10		0.0365	[0.025-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1139	chr10	72648335	72648336	rs827237	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q22.1	NR	rs827237-C	0.8128	3E-8		0.0294	[0.019-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1139	chr10	72680999	72681000	rs58470346	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q22.1	NR	rs58470346-A	0.213	5E-10		0.00832334	[0.0057-0.0109] unit decrease	NR [9732723] (imputed)	N
1139	chr10	72688370	72688371	rs1466576	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	PCBD1	rs1466576-G	0.472	8E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
1139	chr10	72691650	72691651	rs12764441	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	10q22.1	PCBD1, SGPL1	rs12764441-T	0.48	4E-6		0.1	[0.059-0.141] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1139	chr10	72701910	72701911	rs555011023	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10q22.1	RP11-432J9.6	rs555011023-T	0.0014	8E-6		0.7225	[0.4-1.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1139	chr10	72711699	72711700	rs58738811	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	10q22.1	NR	rs58738811-?	NR	4E-6		0.608439	[0.35-0.87] unit increase	NR [13958389] (imputed)	N
1139	chr10	72729491	72729492	rs11597510	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	10q22.1	Intergenic	rs11597510-?	NR	5E-6				Illumina [9008729] (imputed)	N
1139	chr10	72729876	72729877	rs12357710	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.1	SGPL1	rs12357710-?	NR	9E-6	(SM 22:1)	0.2857755	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1140	chr10	72752981	72752982	rs10999632	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	10q22.1	Intergenic	rs10999632-?		5E-6		0.04685133	[NR] unit increase	Illumina [575353]	N
1140	chr10	72752981	72752982	rs10999632	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	10q22.1	Intergenic	rs10999632-?		6E-6		0.004991968	[NR] unit increase	Illumina [575353]	N
1140	chr10	72755153	72755154	rs1338637	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.1	NR	rs1338637-?	NR	4E-6				Affymetrix [NR]	N
1140	chr10	72767408	72767409	rs10509328	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10q22.1	NR	rs10509328-G	0.09	1E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.86	[1.45-2.39]	Illumina [414804] (imputed)	N
1140	chr10	72795876	72795877	rs1891159	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	PCBD1	rs1891159-A	0.491	3E-6	(INS )	0.04	[NR] uU/mL increase	Illumina [899892]	N
1140	chr10	72848453	72848454	rs10999667	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q22.1	PCBD1, UNC5B	rs10999667-A	0.6351	1E-7		0.00937	[0.0059-0.0128] unit increase	Affymetrix [11880941] (imputed)	N
1140	chr10	72852734	72852735	rs7910164	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA			rs7910164-A	0.6423	5E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1140	chr10	72854225	72854226	rs950718	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with any chromosomal aberration	417 European ancestry cases, 5,199 European ancestry controls	NA			rs950718-C	0.07	2E-6		1.74		Illumina [10258281] (imputed)	N
1141	chr10	72891542	72891543	rs57716333	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q22.1		rs57716333-G	0.695	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1141	chr10	72907950	72907951	rs7900002	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	10q22.1	UNC5B	rs7900002-T	0.6012	4E-8		5.503	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1141	chr10	72982984	72982985	rs16928529	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q22.1	UNC5B	rs16928529-?	NR	4E-6				Affymetrix [504219]	N
1141	chr10	73001241	73001242	rs878720	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q22.1	NR	rs878720-G	0.437	4E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1141	chr10	73005936	73005937	rs7080150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.1		rs7080150-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1142	chr10	73039074	73039075	rs7086901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	10q22.1		rs7086901-C	NR	1E-8		0.092	[0.06-0.124] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1142	chr10	73044412	73044413	rs10762434	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q22.1	UNC5B	rs10762434-C	0.7752	2E-8		1.0252126		Affymetrix [11880941] (imputed)	N
1142	chr10	73058468	73058469	rs10762437	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	10q22.1	UNC5B	rs10762437-G	0.16	4E-6		2.5	[1.7-3.8]	Illumina [4873589] (imputed)	N
1142	chr10	73095792	73095793	rs16928705	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10q22.1	SLC29A3, UNC5B, CDH23	rs16928705-A	0.084	7E-6		2.67	[1.71-4.15]	Illumina [1556551]	N
1142	chr10	73105420	73105421	rs2249989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.1	SLC29A3	rs2249989-G	0.753977	5E-21		0.024251018	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr10	73106126	73106127	rs946875	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q22.1		rs946875-A	0.245	1E-10				Affymetrix [10369434] (imputed)	N
1142	chr10	73107211	73107212	rs1609652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q22.1	SLC29A3	rs1609652-G	0.753887	4E-12		0.017837625	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr10	73113930	73113931	rs780676	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	10q22.1	NR	rs780676-G		2E-6				NR [525577]	N
1142	chr10	73115941	73115942	rs2252996	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	10q22.1	SLC29A3	rs2252996-A	0.68	3E-6		1.2195		Illumina [2100739] (imputed)	N
1142	chr10	73121944	73121945	rs1084004	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	SLC29A3	rs1084004-A	0.377	8E-7	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1142	chr10	73121944	73121945	rs1084004	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.1	PCBD1, SLC29A3	rs1084004-A	0.377	2E-6	(HOMA-IR)	0.03	[NR] unit increase	Illumina [899892]	N
1142	chr10	73135918	73135919	rs1417210	22951725	Tang XF	2012-09-06	J Invest Dermatol	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	10q22.1	SLC29A3, CDH23, UNC5B	rs1417210-?	0.31	2E-8		1.14	[1.09-1.19]	Illumina [493909]	N
1143	chr10	73144234	73144235	rs7091537	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	10q22.1	SLC29A3, CDH23	rs7091537-A	0.09	9E-6		1.45		Illumina [8974355] (imputed)	N
1143	chr10	73147306	73147307	rs10823730	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	10q22.1	SLC29A3	rs10823730-T	0.595	6E-9		0.027	[0.017-0.037] SD units increase	NR [9926106] (imputed)	N
1143	chr10	73161000	73161001	rs117554123	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.1	NR	rs117554123-A	0.0122	4E-12	(AKR7A3)	1.121	NR unit increase	Illumina [1671387] (imputed)	N
1143	chr10	73199500	73199501	rs4747153	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q22.1		rs4747153-?	NR	4E-6		0.15	[0.087-0.213] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1144	chr10	73292870	73292871	rs10999869	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	10q22.1	CDH23	rs10999869-?	NR	7E-6		0.169	[0.091-0.247] unit decrease	Illumina [6319684] (imputed)	N
1144	chr10	73295340	73295341	rs11599279	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	10q22.1		rs11599279-?	NR	8E-7		1.74	[1.41-2.14]	Affymetrix, Illumina [29826485] (imputed)	N
1144	chr10	73309528	73309529	rs875860	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	10q22.1	CDH23	rs875860-T	0.12	5E-6	(eGFRchange CKD)	0.31	[NR] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1144	chr10	73312376	73312377	rs7903757	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	10q22.1	CDH23, LOC105378355	rs7903757-?	NR	9E-6				Illumina [519442]	N
1144	chr10	73319570	73319571	rs1900511	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	10q22.1	LOC105378355	rs1900511-?	NR	9E-6				Illumina [519442]	N
1144	chr10	73334409	73334410	rs7923245	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q22.1		rs7923245-G	0.405	2E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1144	chr10	73338333	73338334	rs10823791	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	10q22.1	CDH23	rs10823791-T	0.4	4E-8		1.023	[1.015-1.031]	Affymetrix [7736308] (imputed)	N
1144	chr10	73338333	73338334	rs10823791	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	10q22.1	NR	rs10823791-A	0.6	1E-7		0.028	[0.018-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1144	chr10	73368748	73368749	rs12773205	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	10q22.1	NR	rs12773205-?		4E-6		1.6949153	[NR]	NR [NR]	N
1144	chr10	73377111	73377112	rs143282422	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	10q22.1	CDH23	rs143282422-A	1.09	6E-9	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1144	chr10	73378410	73378411	rs754726	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	10q22.1	CDH23	rs754726-?	NR	5E-8		2.98	[1.92-4.04] unit decrease	Illumina [2820932] (imputed)	N
1145	chr10	73407536	73407537	rs4746091	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q22.1	CDH23	rs4746091-C		2E-6		0.78	[NR]	Illumina [up to 9464381] (imputed)	N
1145	chr10	73411112	73411113	rs61852012	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Eye morphology	2,447 European ancestry individuals	671 European ancestry individuals	10q22.1	Intergenic	rs61852012-T	0.1333	4E-7	(Intercanthal width)	0.4484	[0.23-0.67] unit decrease	Illumina [34985077] (imputed)	N
1145	chr10	73418872	73418873	rs117583072	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	10q22.1		rs117583072-?	NR	2E-8		5.6574135	z score increase	Affymetrix [NR] (imputed)	N
1145	chr10	73422283	73422284	rs1625975	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q22.1	CDH23	rs1625975-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1145	chr10	73425182	73425183	rs1665627	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	10q22.1	CDH23	rs1665627-A		3E-7	(DLCO)	0.11	[0.069-0.151] unit increase	Affymetrix, Illumina [NR]	N
1145	chr10	73429364	73429365	rs59843444	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.1	NR	rs59843444-T	0.0122	2E-8	(IGHG2)	1.53	NR unit increase	Illumina [1671387] (imputed)	N
1145	chr10	73466708	73466709	rs10823829	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q22.1	CDH23	rs10823829-T	0.718	1E-9		0.91	[0.88-0.94]	Illumina [11270530] (imputed)	N
1145	chr10	73501065	73501066	rs10999979	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	10q22.1	CDH23	rs10999979-A	NR	5E-8		1.17	[1.12-1.22]	Illumina [NR] (imputed)	N
1145	chr10	73501065	73501066	rs10999979	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	10q22.1	CDH23	rs10999979-A	NR	1E-7		1.163	[1.11-1.22]	Illumina [5719137] (imputed)	N
1145	chr10	73508790	73508791	rs748113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q22.1		rs748113-C	NR	5E-39		0.0283	[0.024-0.033] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1145	chr10	73508790	73508791	rs748113	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q22.1		rs748113-T	0.564	8E-21				Affymetrix [10369434] (imputed)	N
1145	chr10	73508790	73508791	rs748113	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q22.1		rs748113-T	0.564	3E-24				Affymetrix [10369434] (imputed)	N
1145	chr10	73508790	73508791	rs748113	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	10q22.1		rs748113-T	0.55	3E-15		0.0749	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q22.1	C10orf54	rs748113-C	0.436075	6E-15		0.017623743	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q22.1	C10orf54	rs748113-C	0.436072	8E-12		0.015281721	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q22.1	C10orf54	rs748113-C	0.436067	1E-20		0.020792916	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.1	C10orf54	rs748113-C	0.436075	4E-56		0.035235073	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs748113-C	0.460826	2E-64				Affymetrix, Illumina [23472807] (imputed)	N
1145	chr10	73508790	73508791	rs748113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q22.1	NR	rs748113-C	0.436258	2E-65		0.03428	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1145	chr10	73508790	73508791	rs748113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q22.1		rs748113-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1145	chr10	73508790	73508791	rs748113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10q22.1	C10orf54	rs748113-C	0.436	1E-9		0.02225834	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1145	chr10	73508790	73508791	rs748113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	10q22.1	C10orf54	rs748113-C	0.436	1E-20		0.03434921	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1145	chr10	73515154	73515155	rs201859625	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	10q22.1		rs201859625-?	NR	2E-12		0.635475	[0.46-0.81] unit increase	NR [9800000] (imputed)	N
1145	chr10	73515154	73515155	rs201859625	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	10q22.1		rs201859625-?	NR	3E-9		0.537618	[0.36-0.71] unit increase	NR [9800000] (imputed)	N
1145	chr10	73515154	73515155	rs201859625	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	10q22.1		rs201859625-?	NR	6E-18		0.734338	[0.56-0.91] unit increase	NR [9800000] (imputed)	N
1145	chr10	73515154	73515155	rs201859625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q22.1	C10orf54	rs201859625-A	1.7199999999995E-4	1E-11		0.8079819	[0.58-1.04] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q22.1		rs3747869-C	NR	9E-28		0.033	[0.027-0.039] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q22.1		rs3747869-C	0.844937	2E-15		0.0372176	[0.028-0.046] unit increase	Illumina [13479091] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q22.1		rs3747869-C	NR	2E-17		0.0285	[0.022-0.035] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	10q22.1		rs3747869-C	0.843831	2E-9		0.0362146	[0.024-0.048] unit increase	Illumina [13471440] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q22.1		rs3747869-C	NR	1E-13		0.0241	[0.018-0.03] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q22.1	C10orf54	rs3747869-C	0.9007031	4E-18		0.032506596	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q22.1	C10orf54	rs3747869-C	0.9007129	1E-17		0.031566914	[0.024-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs3747869-C	0.887996	2E-42				Affymetrix, Illumina [24649327] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q22.1	NR	rs3747869-C	0.900449	2E-33		0.038842	[0.033-0.045] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	10q22.1	NR	rs3747869-A	0.156933	1E-13		0.036837	[0.027-0.047] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs3747869-C	0.893466	2E-24				Affymetrix, Illumina [23114412] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q22.1	NR	rs3747869-C	0.900896	2E-22		0.032659	[0.026-0.039] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q22.1		rs3747869-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	10q22.1	C10orf54	rs3747869-?	NR	2E-9		0.03496	[0.024-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q22.1	C10orf54	rs3747869-C	0.9005	1E-12		0.04254832	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1145	chr10	73520631	73520632	rs3747869	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	10q22.1	C10orf54	rs3747869-C	0.9006	7E-9		0.03478056	[0.023-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1145	chr10	73525524	73525525	rs7919533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q22.1	C10orf54, CDH23	rs7919533-C	0.485778	1E-20		0.020791747	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr10	73525524	73525525	rs7919533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.1	NR	rs7919533-C	0.461075	6E-27				Affymetrix, Illumina [23467995] (imputed)	N
1145	chr10	73525524	73525525	rs7919533	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q22.1	NR	rs7919533-C	0.487915	2E-26		0.02038	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1145	chr10	73525524	73525525	rs7919533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10q22.1	C10orf54, CDH23	rs7919533-C	0.4868	2E-9		0.02160537	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1145	chr10	73527046	73527047	rs1867982	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q22.1	intergenic	rs1867982-?	NR	6E-6	(FEV1/FVC decline in non-asthmatics)	0.2018	[0.11-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1145	chr10	73527046	73527047	rs1867982	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	10q22.1	CDH23	rs1867982-A	0.11	9E-6		0.058	unit increase	Illumina [~ 6300000] (imputed)	N
1145	chr10	73528897	73528898	rs10999992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C10orf54	5,365 Icelandic ancestry individuals	NA	10q22.1		rs10999992-C	0.1536	1E-15		0.210888	[0.16-0.26] unit increase	Illumina [7506463] (imputed)	N
1145	chr10	73528897	73528898	rs10999992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C10orf54	5,362 Icelandic ancestry individuals	NA	10q22.1		rs10999992-C	0.1536	1E-19		0.237422	[0.19-0.29] unit increase	Illumina [7506463] (imputed)	N
1145	chr10	73528897	73528898	rs10999992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	C10orf54	rs10999992-T	0.8534375	4E-9	(C10orf54, 11531_24_3)	0.20792879	[0.14-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1145	chr10	73528897	73528898	rs10999992	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	C10orf54	rs10999992-T	0.8534375	2E-13	(C10orf54, 14123_34_3)	0.25570482	[0.19-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
1145	chr10	73531068	73531069	rs10762477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	C10orf54	rs10762477-G	0.148	2E-14	(Platelet receptor Gi24, C10orf54.14123.34.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1146	chr10	73536188	73536189	rs9415997	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10q22.1		rs9415997-A	NR	2E-6		0.95619		Affymetrix, Illumina [62056310] (imputed)	N
1146	chr10	73538163	73538164	rs10762481	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	C10orf54	rs10762481-C	0.383	4E-13	(Complement C1q tumor necrosis factor-related protein 1, C1QTNF1.6304.8.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1146	chr10	73550116	73550117	rs11592462	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	CDH23	rs11592462-G	0.487	3E-41	(Leukocyte immunoglobulin-like receptor subfamily B member 4, LILRB4.6453.70.3)	0.32	[0.28-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1146	chr10	73566202	73566203	rs4747197	29186428	Tonjes A	2017-11-27	Hum Mol Genet	Genome-wide meta-analysis identifies novel determinants of circulating serum progranulin.	Progranulin levels	1,963 European ancestry individuals, 848 Sorbian (founder/genetic isolate) individuals	1800 European ancestry individuals	10q22.1	CDH23	rs4747197-A	0.251	2E-12		0.0563	unit decrease	Affymetrix [2069113] (imputed)	N
1146	chr10	73568405	73568406	rs4747198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q22.1	CDH23	rs4747198-G	0.283578	3E-10		0.015500398	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1146	chr10	73569317	73569318	rs4747199	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	CDH23	rs4747199-T	0.294	4E-18	(Granulins, GRN.4992.49.1)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1146	chr10	73571520	73571521	rs11000013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q22.1	CDH23	rs11000013-A	0.114112	2E-9		0.02109446	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1146	chr10	73574404	73574405	rs4747200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRN	5,355 Icelandic ancestry individuals	NA	10q22.1		rs4747200-G	0.2905	2E-16		0.164966	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1146	chr10	73578502	73578503	rs885828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAP	5,364 Icelandic ancestry individuals	NA	10q22.1		rs885828-A	0.2913	1E-83		0.390498	[0.35-0.43] unit increase	Illumina [7506463] (imputed)	N
1146	chr10	73578502	73578503	rs885828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB4	5,366 Icelandic ancestry individuals	NA	10q22.1		rs885828-A	0.2913	2E-75		0.375534	[0.34-0.42] unit increase	Illumina [7506463] (imputed)	N
1146	chr10	73591529	73591530	rs11000019	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	10q22.1	PSAP	rs11000019-?	NR	8E-8				Affymetrix [786195]	N
1146	chr10	73591828	73591829	rs41306532	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB4	5,366 Icelandic ancestry individuals	NA	10q22.1		rs41306532-G	0.4845	8E-180		0.502425	[0.47-0.54] unit increase	Illumina [7506463] (imputed)	N
1146	chr10	73600315	73600316	rs7899959	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAP	5,364 Icelandic ancestry individuals	NA	10q22.1		rs7899959-A	0.4844	1E-195		0.516162	[0.48-0.55] unit increase	Illumina [7506463] (imputed)	N
1146	chr10	73627785	73627786	rs36009580	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	10q22.1	intergenic	rs36009580-G	0.194	8E-6		2.965	[1.839-4.78]	Illumina [7585874] (imputed)	N
1146	chr10	73638057	73638058	rs61852182	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	10q22.1	PSAP, CHST3	rs61852182-T		6E-6		0.351	[0.2-0.5] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1146	chr10	73638154	73638155	rs4403732	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q22.1	intergenic	rs4403732-C	0.1842	6E-6		0.0346	[0.02-0.049] unit decrease	NR [8041861] (imputed)	N
1146	chr10	73651457	73651458	rs10762489	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	NR	rs10762489-G	0.215	6E-31	(Leukocyte immunoglobulin-like receptor subfamily B member 4, LILRB4.6453.70.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1146	chr10	73652177	73652178	rs10823865	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	10q22.1	NR	rs10823865-C	0.5928	9E-6		0.1474	[0.083-0.212] unit decrease	Illumina [NR] (imputed)	N
1146	chr10	73655175	73655176	rs11000064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAP	5,364 Icelandic ancestry individuals	NA	10q22.1		rs11000064-T	0.2915	7E-194		0.572679	[0.53-0.61] unit decrease	Illumina [7506463] (imputed)	N
1146	chr10	73655175	73655176	rs11000064	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB4	5,366 Icelandic ancestry individuals	NA	10q22.1		rs11000064-T	0.2915	3E-176		0.554746	[0.52-0.59] unit decrease	Illumina [7506463] (imputed)	N
1146	chr10	73655349	73655350	rs7086891	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	NR	rs7086891-G	0.7090625	4E-122	(PSAP, 6207_10_3)	0.6186474	[0.57-0.67] unit increase	Illumina [> 1000000] (imputed)	N
1146	chr10	73655349	73655350	rs7086891	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	NR	rs7086891-G	0.7090625	3E-107	(LILRB4, 6453_70_3)	0.5954773	[0.54-0.65] unit increase	Illumina [> 1000000] (imputed)	N
1147	chr10	73723955	73723956	rs76409888	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q22.1	NR	rs76409888-?	NR	1E-7	(Latino)	1.7704	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1147	chr10	73734990	73734991	rs116508194	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	10q22.1	CHST3	rs116508194-G	NR	8E-6	(men)	0.937917	[0.53-1.35] unit increase	Illumina [13520550] (imputed)	N
1147	chr10	73737912	73737913	rs12258400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.1		rs12258400-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1147	chr10	73745165	73745166	rs76691147	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	10q22.1	NR	rs76691147-?	NR	1E-5				NR [18617478] (imputed)	N
1147	chr10	73762409	73762410	rs77200377	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	10q22.1		rs77200377-?	NR	1E-7		1.2471774	[1.14910448980819-1.35362038328816]	Illumina [7827597] (imputed)	N
1147	chr10	73767858	73767859	rs3740129	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	10q22.1		rs3740129-A	0.4589	2E-11		1.0770222	[1.054050536-1.100494478]	Affymetrix, Illumina [NR] (imputed)	N
1147	chr10	73772998	73772999	rs4148953	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.1	NR	rs4148953-A	0.0122	1E-8	(COQ9)	0.01662	NR unit increase	Illumina [1671387] (imputed)	N
1147	chr10	73778266	73778267	rs1245582	24216480	Song YQ	2013-10-08	J Clin Invest	Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant.	Disc degeneration (lumbar)	366 Japanese ancestry cases, 3,331 Japanese ancestry controls	1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control	10q22.1	CHST3	rs1245582-?	0.44	4E-8		1.2	[1.13-1.29]	Illumina [464775]	N
1147	chr10	73778266	73778267	rs1245582	24216480	Song YQ	2013-10-08	J Clin Invest	Lumbar disc degeneration is linked to a carbohydrate sulfotransferase 3 variant.	Disc degeneration (lumbar)	366 Japanese ancestry cases, 3,331 Japanese ancestry controls	1,628 East Asian ancestry cases, 17,469 East Asian ancestry controls, 399 European ancestry cases, 5,035 European ancestry control	10q22.1	CHST3	rs1245582-?	0.44	1E-6	(East Asians)			Illumina [464775]	N
1147	chr10	73784024	73784025	rs1245518	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10q22.1		rs1245518-C	0.5577	9E-6	(East Asian)	1.06	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1147	chr10	73793243	73793244	rs72806259	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	10q22.1		rs72806259-T	0.093896	5E-7		1.4887599	NR	Affymetrix [7846216] (imputed)	N
1148	chr10	73800704	73800705	rs7072898	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q22.1	NR	rs7072898-A	0.0066	9E-6		0.10554339	[0.059-0.152] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1148	chr10	73806287	73806288	rs1678618	22832964	David SP	2012-05-22	Transl Psychiatry	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NA	10q22.1	SPOCK2	rs1678618-A	0.74	8E-7	(AOI)	0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [~ 2900000] (imputed)	N
1148	chr10	73810669	73810670	rs1245576	33751636	Wei Y	2021-03-09	Biom J	Confident identification of subgroups from SNP testing in RCTs with binary outcomes.	Response to antioxidants and zinc in age-related macular degeneration (disease progression)	450 European ancestry AREDS formula treated cases, 677 European ancestry placebo treated cases	NA	10q22.1	SPOCK2, CHST3	rs1245576-?	NR	3E-6				Illumina [3895495]	N
1148	chr10	73828747	73828748	rs1678627	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.1	ASCC1	rs1678627-?	NR	8E-6	(ureidopropionic acid)	0.16972062	[0.095-0.244] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1148	chr10	73835273	73835274	rs12773019	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.1	NR	rs12773019-G	0.0275	5E-8		0.0885	[0.057-0.12] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1148	chr10	73846340	73846341	rs1245547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.1	SPOCK2	rs1245547-G	0.4615625	3E-17	(SPOCK2, 5491_12_3)	0.21107017	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1148	chr10	73849638	73849639	rs1245541	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	10q22.1	SPOCK2	rs1245541-G	0.61	5E-7	(IGF-I)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1148	chr10	73849751	73849752	rs1245540	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.1	SPOCK2	rs1245540-T	0.449	3E-19	(Testican-2, SPOCK2.5491.12.3)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1148	chr10	73856983	73856984	rs3312	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK2	5,362 Icelandic ancestry individuals	NA	10q22.1		rs3312-G	0.4783	4E-24		0.192285	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
1149	chr10	73955651	73955652	rs11000212	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	10q22.1	ASCC1	rs11000212-G	0.2044	9E-7	(waist)	0.8562	NR unit increase	Affymetrix [305158]	N
1149	chr10	73955651	73955652	rs11000212	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	10q22.1	DDIT4	rs11000212-?		2E-6				NR [327872]	N
1149	chr10	73955651	73955652	rs11000212	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	10q22.1	ASCC1	rs11000212-?	NR	1E-6		0.284	[0.17-0.4] unit increase	Affymetrix [1590162] (imputed)	N
1149	chr10	73970836	73970837	rs7073342	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10q22.1	NR	rs7073342-T	NR	8E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
1149	chr10	73989183	73989184	rs10823909	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-776 sp000438195 abundance in stool	5,959 Finnish ancestry individuals	NA	10q22.1		rs10823909-C	0.0511731	4E-9		0.167412	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1149	chr10	73989183	73989184	rs10823909	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-776 abundance in stool	5,959 Finnish ancestry individuals	NA	10q22.1		rs10823909-C	0.0511731	4E-9		0.185165	[0.12-0.25] unit increase	Illumina [7980478] (imputed)	N
1149	chr10	73991471	73991472	rs111228444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q22.1		rs111228444-A	NR	7E-12		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1149	chr10	73991471	73991472	rs111228444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q22.1		rs111228444-A	0.098745	5E-12		0.023305	[0.017-0.03] unit increase	Illumina [13479295] (imputed)	N
1149	chr10	73991471	73991472	rs111228444	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q22.1	ANAPC16	rs111228444-?	NR	8E-14		0.035605915	[0.026-0.045] unit increase	Illumina [27896057] (imputed)	N
1149	chr10	73992039	73992040	rs7913447	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	10q22.1	NR	rs7913447-?	NR	1E-6		1.0879025	[1.05-1.13]	Illumina [7437091] (imputed)	N
1149	chr10	74000253	74000254	rs75524223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q22.1		rs75524223-A	NR	5E-8		0.0226	[0.015-0.031] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1149	chr10	74031312	74031313	rs4415679	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q22.1	NR	rs4415679-G		6E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1149	chr10	74036428	74036429	rs4747241	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	10q22.1	DDIT4	rs4747241-T	0.38	7E-6	(Left HG area)	11.94	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1149	chr10	74054589	74054590	rs7075993	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	10q22.1	DDIT4	rs7075993-G	0.3548	1E-10		1.052	NR	Affymetrix [9154080] (imputed)	N
1150	chr10	74060200	74060201	rs10740399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q22.1		rs10740399-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1150	chr10	74068695	74068696	rs4300326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10q22.1		rs4300326-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1150	chr10	74081231	74081232	rs145028791	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	10q22.1		rs145028791-?	NR	1E-8		3.0897	[2.03-4.15] unit increase	Affymetrix [NR] (imputed)	N
1150	chr10	74089363	74089364	rs9415064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q22.1	Intergenic	rs9415064-T	0.6177	8E-9	(MTAG)	0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr10	74100278	74100279	rs9416017	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q22.1	DNAJB12	rs9416017-T	0.4034	2E-8		5.655	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1150	chr10	74100641	74100642	rs9416018	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q22.1	Intergenic	rs9416018-A	0.6028	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr10	74100641	74100642	rs9416018	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q22.1	Intergenic	rs9416018-A	0.6132	6E-11	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr10	74127852	74127853	rs4262652	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q22.1	ANAPC16, DDIT4, DNAJB12, MICU1, MCU, OIT3, PLA2G12B	rs4262652-?		2E-17				Affymetrix, Illumina [NR] (imputed)	N
1151	chr10	74203200	74203201	rs11000300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.1	NR	rs11000300-T	NR	5E-9		0.0343	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1152	chr10	74318561	74318562	rs6480627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q22.1	NR	rs6480627-A	0.321676	2E-12		0.014223	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1152	chr10	74386531	74386532	rs59316512	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q22.1	NR	rs59316512-A	0.972829	1E-8		0.0370283	[0.024-0.05] unit increase	NR [NR]	N
1153	chr10	74481951	74481952	rs2921447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q22.1		rs2921447-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1154	chr10	74611239	74611240	rs6415912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q22.1	MCU	rs6415912-G	0.731399	2E-10		0.015859624	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr10	74637325	74637326	rs7901016	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	10q22.1	CCDC109A	rs7901016-C	NR	7E-20		0.038690332	[0.03-0.047] unit increase	Illumina [242289]	N
1154	chr10	74637325	74637326	rs7901016	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	10q22.1	NR	rs7901016-C	0.049	4E-8		0.041	unit increase	Illumina [242289]	N
1154	chr10	74654753	74654754	rs7100001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q22.1	NR	rs7100001-A	0.048885999999999985	1E-8		0.0106418	[0.0069-0.0144] unit increase	Affymetrix [16582909] (imputed)	N
1154	chr10	74654753	74654754	rs7100001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q22.1	NR	rs7100001-A	0.048885999999999985	2E-6		0.0094344	[0.0052-0.0137] unit increase	Affymetrix [16582965] (imputed)	N
1154	chr10	74662592	74662593	rs57176252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q22.1	NR	rs57176252-C	NR	3E-6		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1154	chr10	74662592	74662593	rs57176252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q22.1	NR	rs57176252-C	0.956	7E-6	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1154	chr10	74662592	74662593	rs57176252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q22.1	NR	rs57176252-C	NR	1E-8		0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
1154	chr10	74662592	74662593	rs57176252	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q22.1	NR	rs57176252-C	0.956	5E-8	(EA)	0.063	unit increase	Affymetrix [at least 7091467] (imputed)	N
1154	chr10	74665523	74665524	rs78295286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q22.1		rs78295286-T	NR	1E-8		0.036	[0.024-0.048] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1154	chr10	74665523	74665524	rs78295286	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q22.1	OIT3	rs78295286-?		7E-9		0.0465	[0.031-0.062] unit increase	Illumina [31500000] (imputed)	N
1154	chr10	74665523	74665524	rs78295286	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	10q22.1	OIT3	rs78295286-?	NR	3E-9		0.04575	[0.031-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
1154	chr10	74682632	74682633	rs11000448	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q22.1	OIT3	rs11000448-?	NR	4E-11		0.0523329	[0.037-0.068] unit decrease	Illumina [4804024] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q22.1		rs41280378-G	NR	4E-8		0.0478	[0.031-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q22.1		rs41280378-G	0.251026876	5E-9		0.06586128	[0.044-0.088] unit decrease	Illumina [13429980] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	10q22.1		rs41280378-G	0.249555	7E-15		0.0454309	[0.034-0.057] unit decrease	Illumina [13461863] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q22.1		rs41280378-G	NR	2E-14		0.0315	[0.023-0.04] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q22.1	OIT3	rs41280378-?		7E-12		0.0409	[0.029-0.053] unit decrease	Illumina [31500000] (imputed)	N
1154	chr10	74692645	74692646	rs41280378	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	10q22.1	OIT3	rs41280378-?	NR	9E-15		0.04845	[0.036-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
1154	chr10	74703848	74703849	rs12257692	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q22.1	PLA2G12B	rs12257692-T	0.799	1E-9		0.0283	[0.019-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1155	chr10	74711375	74711376	rs11000468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q22.1		rs11000468-T	NR	1E-13		0.0171	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1155	chr10	74711375	74711376	rs11000468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q22.1	NR	rs11000468-T	NR	2E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr10	74711375	74711376	rs11000468	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q22.1	PLA2G12B	rs11000468-C	0.744676	2E-8		0.0125964	[0.0082-0.017] unit decrease	Affymetrix [NR] (imputed)	N
1155	chr10	74714176	74714177	rs3829126	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q22.1	PLA2G12B	rs3829126-G	0.90655	2E-11		0.0229634	[0.016-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1155	chr10	74714176	74714177	rs3829126	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q22.1	PLA2G12B	rs3829126-?	NR	6E-9		0.0262	[0.018-0.034] unit increase	Affymetrix [5701386] (imputed)	N
1155	chr10	74738268	74738269	rs10823968	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q22.1		rs10823968-A	0.633	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1155	chr10	74744570	74744571	rs7098997	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q22.1	NR	rs7098997-G	0.05	3E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1155	chr10	74751578	74751579	rs12572586	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q22.1	PLA2G12B	rs12572586-T	0.9369	2E-12		0.3646	[0.26-0.47] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1155	chr10	74780917	74780918	rs79188145	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q22.1	P4HA1	rs79188145-A	0.94	2E-9		6.02	z-score increase	Affymetrix [4312306] (imputed)	N
1155	chr10	74786592	74786593	rs7898822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q22.1		rs7898822-A	NR	8E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1155	chr10	74794242	74794243	rs57814779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	10q22.1		rs57814779-A	0.26236	1E-8		0.0233248	[0.015-0.031] unit decrease	Illumina [13476599] (imputed)	N
1156	chr10	74847025	74847026	rs369383750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q22.1		rs369383750-ATT	0.920643	3E-8		0.0420306	[0.027-0.057] unit increase	NR [11722792] (imputed)	N
1156	chr10	74872425	74872426	rs72812273	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	10q22.2	NUDT13	rs72812273-?	NR	8E-6		0.42	[0.24-0.6] unit decrease	Illumina [6319684] (imputed)	N
1156	chr10	74894374	74894375	rs2271904	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q22.2		rs2271904-T	0.9386	3E-10		0.28516757	[0.19-0.38] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1156	chr10	74896663	74896664	rs36152134	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	10q22.2		rs36152134-T	0.912	7E-9		0.14750168	[0.097-0.198] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1156	chr10	74918195	74918196	rs7905296	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	10q22.2	ECD	rs7905296-C	0.176	8E-11	(AA)	0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1156	chr10	74918195	74918196	rs7905296	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	10q22.2	ECD	rs7905296-C	0.176	9E-8	(AA)	0.057	[0.035-0.079] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1157	chr10	75016364	75016365	rs12240572	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q22.2	DNAJC9-AS1	rs12240572-A	0.1671	1E-11		0.0032	[0.002-0.0044] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1157	chr10	75044494	75044496	rs539653958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q22.2		rs539653958-C	NR	5E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1157	chr10	75095897	75095898	rs61221361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.2	TTC18	rs61221361-C	0.117884	1E-9		0.023469932	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1158	chr10	75197050	75197051	rs12644	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q22.2		rs12644-T	0.0931	5E-10		0.2638569	[0.18-0.35] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1159	chr10	75326121	75326122	rs72814320	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q22.2	USP54	rs72814320-C	0.0219293138048944	8E-7	(F_Streptococcaceae_HB)	1.06126	[0.64-1.48] unit decrease	Illumina [7711310] (imputed)	N
1159	chr10	75326121	75326122	rs72814320	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q22.2	USP54	rs72814320-C	0.0219293138048944	1E-6	(G_Streptococcus_HB)	1.01772	[0.61-1.43] unit decrease	Illumina [7711310] (imputed)	N
1159	chr10	75364533	75364534	rs143580123	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	10q22.2	USP54	rs143580123-?		5E-6		16.666668	[5.26-50]	Illumina [NR] (imputed)	N
1160	chr10	75406140	75406141	rs3740293	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	10q22.2	SYNPO2L	rs3740293-C	0.1464	5E-11		1.3312255	1.19-1.49	Illumina [6530233] (imputed)	N
1160	chr10	75406140	75406141	rs3740293	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	10q22.2	SYNPO2L	rs3740293-C	0.1464	3E-11		1.2722148	1.18-1.37	Illumina [6530233] (imputed)	N
1160	chr10	75406911	75406912	rs34163229	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q22.2	SYNPO2L	rs34163229-T	0.151986316290412	6E-6		0.31314394	[0.18-0.45] unit increase	Illumina [247039]	N
1160	chr10	75407648	75407649	rs4746139	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	10q22.2	AGAP5, BMS1P4, C10orf55, CAMK2G, CHCHD1, FUT11, GLUD1P3, NDST2, PLAU, SEC24C, SYNPO2L, ZSWIM8, ZSWIM8-AS1	rs4746139-?	NR	2E-10				Affymetrix [up to 7325140] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	9E-12	(-144 ms)	0.0533356	[0.038-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	8E-25	(-126 ms)	0.0802862	[0.065-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	7E-22	(-132 ms)	0.075093	[0.06-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	6E-20	(-136 ms)	0.0714315	[0.056-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	5E-27	(-124 ms)	0.0813687	[0.066-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	5E-19	(-138 ms)	0.0696824	[0.054-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	5E-17	(-140 ms)	0.0655054	[0.05-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	3E-14	(-142 ms)	0.0595554	[0.044-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	2E-23	(-128 ms)	0.0779641	[0.063-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	1E-22	(-130 ms)	0.0764681	[0.061-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75409876	75409877	rs2177843	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	MYOZ1, SYNPO2L	rs2177843-C	0.843255	1E-20	(-134 ms)	0.0728546	[0.058-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1160	chr10	75410051	75410052	rs12247028	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals		SYNPO2L	rs12247028-A	0.611	8E-9		0.364	[0.24-0.49] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1160	chr10	75414343	75414344	rs60212594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q22.2		rs60212594-C	NR	2E-16		0.1085	[0.083-0.134] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1160	chr10	75414343	75414344	rs60212594	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q22.2	SYNPO2L, NUDT13, MYOZ1, AGAP5	rs60212594-G	0.856	9E-35		1.12	[1.10-1.15]	Illumina [34740186] (imputed)	N
1160	chr10	75414343	75414344	rs60212594	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q22.2	SYNPO2L	rs60212594-G	0.85	6E-27		1.12	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1160	chr10	75417248	75417249	rs4746140	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	10q22.2	SYNPO2L, AGAP5	rs4746140-G	0.85	1E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [8246881] (imputed)	N
1160	chr10	75420113	75420114	rs6480708	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q22.2	SYNPO2L	rs6480708-C	0.85	6E-27	(EA)	1.12	[1.1-1.15]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1160	chr10	75421207	75421208	rs10824026	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	10q22.2	SYNPO2L	rs10824026-A	0.85084	2E-6		1.162055	[1.09713391-1.23081772]	Illumina [8952551] (imputed)	N
1160	chr10	75421207	75421208	rs10824026	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	10q22.2	SYNPO2L	rs10824026-A	0.84	8E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [11795432] (imputed)	N
1160	chr10	75421207	75421208	rs10824026	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	10q22.2	SYNPO2L	rs10824026-A	0.84	4E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1160	chr10	75421445	75421446	rs7394152	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q22.2	SYNPO2L	rs7394152-C	0.8467	3E-19		0.7932	[0.62-0.97] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1160	chr10	75421647	75421648	rs7394190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q22.2		rs7394190-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1160	chr10	75421647	75421648	rs7394190	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Incident atrial fibrillation	7,323 European ancestry cases, 102,776 European ancestry controls.		10q22.2	SYNPO2L	rs7394190-G	0.84	3E-8		1.15	1.09-1.21	Affymetrix, Illumina [at least 3187278] (imputed)	N
1160	chr10	75428295	75428296	rs148321568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q22.2		rs148321568-T	NR	4E-12		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1160	chr10	75430873	75430874	rs7908630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q22.2		rs7908630-T	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1160	chr10	75470354	75470355	rs11000752	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q22.2	AGAP5	rs11000752-T	0.8665	4E-13		0.3584	[0.26-0.46] mmHg decrease	Affymetrix [NR] (imputed)	N
1160	chr10	75470354	75470355	rs11000752	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q22.2	AGAP5	rs11000752-T	0.8663	2E-9		0.2218	[0.15-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1160	chr10	75493733	75493734	rs11000760	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q22.2	NR	rs11000760-G	0.415524	5E-13		0.0139695	[0.01-0.018] unit decrease	NR [NR]	N
1161	chr10	75519690	75519691	rs35972789	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	10q22.2	NR	rs35972789-A	0.0378	1E-9		0.039582025	[0.027-0.052] unit decrease	Affymetrix [10549349] (imputed)	N
1161	chr10	75519690	75519691	rs35972789	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	10q22.2	SEC24C	rs35972789-?	NR	4E-8		0.061	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1161	chr10	75525998	75525999	rs3849969	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	10q22.2	SEC24C	rs3849969-T	0.29402	5E-12		6.906	unit increase (z score)	Illumina [179215]	N
1161	chr10	75538650	75538651	rs1134777	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10q22.2	FUT11	rs1134777-C	0.73	1E-8				NR [> 9500000] (imputed)	N
1161	chr10	75558866	75558867	rs2271271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q22.2		rs2271271-A	NR	2E-9		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1161	chr10	75559662	75559662	rs141230821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	10q22.2	NR	rs141230821-CTCTA	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
1161	chr10	75562160	75562161	rs13013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q22.2		rs13013-A	NR	4E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1161	chr10	75568845	75568846	rs3812637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q22.2		rs3812637-T	NR	2E-8		0.0534	[0.035-0.072] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1161	chr10	75575962	75575963	rs11000785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.2		rs11000785-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1161	chr10	75575962	75575963	rs11000785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q22.2	Intergenic	rs11000785-T	0.2778	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1161	chr10	75580013	75580014	rs7098573	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10q22.2	CAMK2G	rs7098573-A	0.7177	2E-7		0.0145	[0.009-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
1161	chr10	75580013	75580014	rs7098573	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.2	CAMK2G	rs7098573-A	0.7177	8E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1161	chr10	75580013	75580014	rs7098573	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.2	CAMK2G	rs7098573-A	0.7177	6E-11		0.0173	[0.012-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1161	chr10	75580013	75580014	rs7098573	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.2	CAMK2G	rs7098573-A	0.7177	3E-21		0.0246	[0.02-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1161	chr10	75588877	75588878	rs10824037	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	10q22.2	CAMK2G	rs10824037-G	NR	9E-6		0.0196526	[0.011-0.028] unit decrease	Illumina [13519193] (imputed)	N
1161	chr10	75594049	75594050	rs2633310	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q22.2	CAMK2G	rs2633310-T	0.435073424137569	2E-8		0.0443	[0.029-0.06] unit decrease	NR [5035015] (imputed)	N
1161	chr10	75597545	75597546	rs2242256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.2		rs2242256-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1161	chr10	75598098	75598099	rs2633311	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q22.2	CAMK2G	rs2633311-C	0.564243	7E-13		0.00383286	[0.0028-0.0049] unit increase	Affymetrix [13995440] (imputed)	N
1161	chr10	75598098	75598099	rs2633311	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q22.2	NR	rs2633311-C	0.4972	3E-9		0.0237	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1161	chr10	75599126	75599127	rs2675662	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.2	NR	rs2675662-G	0.4361	8E-9		0.0267	[0.018-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1161	chr10	75599126	75599127	rs2675662	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	10q22.2	CAMK2G	rs2675662-A	NR	3E-8		1.138	NR	Illumina [up to 11532644] (imputed)	N
1161	chr10	75599126	75599127	rs2675662	25939698	Tsoi LC	2015-05-05	Nat Commun	Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.	Psoriasis	3,994 European ancestry cases, 7,699 European ancestry controls	6,268 European ancestry cases,  14,172 European ancestry controls, 5,033 cases, 5,707 controls	10q22.2	CAMK2G	rs2675662-A	0.56	2E-14		1.12	[NR]	Illumina [696365] (imputed)	N
1161	chr10	75601595	75601596	rs2459446	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs2459446-C	NR	2E-12		1.08	NR	NR [8016731] (imputed)	N
1161	chr10	75603337	75603338	rs4745723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.2		rs4745723-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1161	chr10	75607167	75607168	rs2242258	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q22.2	CAMK2G	rs2242258-T	0.741068	9E-9		0.00920083	[0.0061-0.0123] unit decrease	Affymetrix [12370749]	N
1161	chr10	75625557	75625558	rs17631059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q22.2		rs17631059-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1162	chr10	75639577	75639578	rs60820984	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10q22.2	CAMK2G	rs60820984-T	0.1867	6E-10		0.0201	[0.014-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1162	chr10	75639577	75639578	rs60820984	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.2	CAMK2G	rs60820984-T	0.1867	4E-14		0.0233	[0.017-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1162	chr10	75639577	75639578	rs60820984	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.2	CAMK2G	rs60820984-T	0.1867	8E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1162	chr10	75652552	75652553	rs145692957	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KAZALD1	5,353 Icelandic ancestry individuals	NA	10q22.2		rs145692957-G	0.01264	2E-39		1.01141	[0.86-1.16] unit decrease	Illumina [7506463] (imputed)	N
1162	chr10	75653799	75653800	rs17741873	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q22.2	CAMK2G	rs17741873-G	NR	5E-8		1.0676	NR	Affymetrix, Illumina [8278136] (imputed)	N
1162	chr10	75653799	75653800	rs17741873	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	10q22.2	CAMK2G, C10orf55	rs17741873-?	NR	8E-6	(adjusted for dose, GFR & AST)	2.888	unit increase (EA, Australian cohort)	Illumina [610255]	N
1162	chr10	75653871	75653872	rs2675669	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	10q22.2	CAMK2G	rs2675669-T	0.5718	4E-11		1.13	NR	Illumina [up to 11532644] (imputed)	N
1162	chr10	75658348	75658349	rs2688608	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	10q22.2	CAMK2G, C10orf55	rs2688608-?	NR	7E-6		1.1904762	[1.11-1.3]	Illumina [at least 5000000] (imputed)	N
1162	chr10	75658348	75658349	rs2688608	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q22.2	NR	rs2688608-?	NR	3E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1162	chr10	75658348	75658349	rs2688608	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10q22.2	C10orf55	rs2688608-A	0.56	4E-8		1.07		Illumina [161311]	N
1162	chr10	75669189	75669190	rs2227551	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KAZALD1	5,353 Icelandic ancestry individuals	NA	10q22.2		rs2227551-G	0.2801	2E-36		0.24895	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1162	chr10	75669189	75669190	rs2227551	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.2	PLAU	rs2227551-T	0.716	5E-20	(Urokinase-type plasminogen activator, PLAU.4158.54.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1162	chr10	75669189	75669190	rs2227551	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q22.2	PLAU	rs2227551-?	NR	3E-8	(subset analysis)			Illumina [130052]	N
1162	chr10	75669189	75669190	rs2227551	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q22.2	NR	rs2227551-A	0.73	5E-13	(EA)	1.1045585	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1162	chr10	75672058	75672059	rs55744193	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLAU	5,348 Icelandic ancestry individuals	NA	10q22.2		rs55744193-A	0.01255	2E-96		1.64801	[1.49-1.8] unit decrease	Illumina [7506463] (imputed)	N
1162	chr10	75672058	75672059	rs55744193	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.2	NR	rs55744193-A	0.007	9E-20	(Urokinase-type plasminogen activator, PLAU.4158.54.2)	1.36	[1.07-1.65] unit decrease	Affymetrix [10572788] (imputed)	N
1162	chr10	75673100	75673101	rs2227564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLAU	5,348 Icelandic ancestry individuals	NA	10q22.2		rs2227564-T	0.2638	2E-81		0.379864	[0.34-0.42] unit increase	Illumina [7506463] (imputed)	N
1162	chr10	75673100	75673101	rs2227564	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.2	NR	rs2227564-C	0.73953125	4E-50	(PLAU, 4158_54_2)	0.41215682	[0.36-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1162	chr10	75673100	75673101	rs2227564	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.2	NR	rs2227564-C	0.73953125	1E-23	(KAZALD1, 7144_234_3)	0.28453603	[0.23-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1162	chr10	75673100	75673101	rs2227564	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q22.2	AC022400.2, FUT11, CHCHD1, PLAU, SEC24C, ZSWIM8, RP11-574K11.31, NDST2, C10orf55, CAMK2G	rs2227564-?		2E-9				Illumina [9560910] (imputed)	N
1162	chr10	75673100	75673101	rs2227564	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q22.2	intergenic	rs2227564-C	0.77	7E-10		1.082	[1.048-1.118]	Affymetrix, Illumina [1230000] (imputed)	N
1162	chr10	75681828	75681829	rs111717055	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	10q22.2	C10orf55	rs111717055-G	0.0168	2E-6		3.023	[1.912-4.779]	Affymetrix, Illumina [14074516] (imputed)	N
1162	chr10	75682175	75682176	rs2688619	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	10q22.2		rs2688619-A	0.46	2E-39		0.108	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1162	chr10	75696748	75696749	rs2675673	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q22.2	C10orf55	rs2675673-G	0.0325349416838721	5E-6	(F_Sutterellaceae_HB)	1.37858	[0.79-1.97] unit decrease	Illumina [7711310] (imputed)	N
1162	chr10	75704500	75704501	rs7094073	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.2	NR	rs7094073-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1162	chr10	75747515	75747515	rs35172794	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.2	intergenic	rs35172794-G	0.8098	4E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1162	chr10	75747972	75747973	rs6480713	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	VCL	rs6480713-T	0.747321	9E-9	(-32 ms)	0.0357199	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1162	chr10	75747972	75747973	rs6480713	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	VCL	rs6480713-T	0.747321	2E-9	(-30 ms)	0.0371381	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1162	chr10	75747972	75747973	rs6480713	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	VCL	rs6480713-T	0.747321	1E-8	(-28 ms)	0.035414	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1162	chr10	75757701	75757702	rs3812625	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in diastole	19,676 Japanese ancestry individuals	NA	10q22.2	VCL	rs3812625-?	NR	1E-8		0.05998	[0.039-0.081] unit decrease	Illumina [6108953] (imputed)	N
1163	chr10	75773361	75773362	rs1403629	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	10q22.2		rs1403629-?	NR	5E-8		0.07	[0.045-0.095] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1163	chr10	75774138	75774139	rs7915720	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	10q22.2		rs7915720-?	NR	1E-6		4.83	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1163	chr10	75774138	75774139	rs7915720	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	10q22.2		rs7915720-?	NR	1E-6		4.87	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1163	chr10	75774138	75774139	rs7915720	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals, 1,606 African American individuals	NA	10q22.2		rs7915720-?	NR	6E-8		0.07	[0.046-0.094] unit increase	Affymetrix, Illumina [6937320] (imputed)	N
1163	chr10	75779107	75779108	rs7074651	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q22.2		rs7074651-C	0.48	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1163	chr10	75783339	75783340	rs11000852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q22.2		rs11000852-C	NR	8E-18		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1163	chr10	75791638	75791639	rs10824058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q22.2		rs10824058-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1163	chr10	75863749	75863750	rs2270552	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	10q22.2		rs2270552-T	0.6766	3E-19		0.06	[0.04-0.08] unit decrease	Illumina [26711992] (imputed)	N
1163	chr10	75886511	75886512	rs7073435	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q22.2	VCL, AP3M1, ADK	rs7073435-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1163	chr10	75887680	75887681	rs11000878	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q22.2		rs11000878-T	0.24	2E-12		7.01	z score increase	Affymetrix [9061022] (imputed)	N
1163	chr10	75887680	75887681	rs11000878	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q22.2	NR	rs11000878-T	0.2627	9E-10				NR [9056863] (imputed)	N
1164	chr10	75900461	75900464	rs71483973	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	10q22.2	VCL, AP3M1, ADK	rs71483973-G		3E-9		0.072	[NR] unit increase	Illumina [24111857] (imputed)	N
1164	chr10	75952669	75952670	rs12220238	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	10q22.2	ADK	rs12220238-?		8E-6	(AA)			Illumina [2200000] (imputed)	N
1164	chr10	75954374	75954375	rs12569971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs12569971-C	0.51699	4E-17				Affymetrix, Illumina [24588908] (imputed)	N
1164	chr10	75954374	75954375	rs12569971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q22.2	NR	rs12569971-C	0.583026	8E-16		0.015014	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1164	chr10	75954848	75954848	rs11372723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q22.2		rs11372723-CA	NR	7E-18		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1164	chr10	75986156	75986157	rs34868542	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q22.2	ADK	rs34868542-T	0.5701	3E-13		0.2044	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1164	chr10	75989911	75989912	rs4564273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q22.2		rs4564273-T	NR	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1164	chr10	76007454	76007455	rs7895133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q22.2	ADK	rs7895133-T	0.580792	2E-10		0.014569029	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr10	76021623	76021624	rs10824134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q22.2		rs10824134-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1165	chr10	76022086	76022087	rs398014146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q22.2	ADK	rs398014146-C	0.646318	6E-11		0.016245551	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr10	76032410	76032411	rs7079515	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.2	NR	rs7079515-?	NR	1E-10				Affymetrix [NR]	N
1165	chr10	76047463	76047464	rs12098284	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q22.2	NA	rs12098284-T	0.1212	1E-12		0.0184	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1165	chr10	76047463	76047464	rs12098284	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q22.2	NA	rs12098284-T	0.1212	1E-12		0.0184	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1165	chr10	76054960	76054961	rs112921972	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.2	NR	rs112921972-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1165	chr10	76060717	76060718	rs72818515	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q22.2	ADK	rs72818515-A	0.731090873841349	3E-6		0.0028272	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1165	chr10	76072048	76072048	rs35574014	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q22.2		rs35574014-TAGAG	NR	3E-11		0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1165	chr10	76084110	76084111	rs11000993	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q22.2	ADK	rs11000993-T	0.876132	3E-11		0.013812	[0.0097-0.0179] unit decrease	Affymetrix [12370749]	N
1165	chr10	76101123	76101123	rs35746333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q22.2		rs35746333-CA	NR	2E-10		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1166	chr10	76243548	76243549	rs11001051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.2		rs11001051-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1167	chr10	76295788	76295789	rs7924176	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		10q22.2	ADK, VCL, AP3M1	rs7924176-A	NR	2E-8		0.167	[0.11-0.22] unit decrease	Illumina [2446724] (imputed)	N
1167	chr10	76295788	76295789	rs7924176	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		10q22.2	ADK, VCL, AP3M1	rs7924176-A	NR	8E-16		0.193	[0.15-0.24] unit increase	Illumina [2446724] (imputed)	N
1167	chr10	76295788	76295789	rs7924176	21931568	Geller F	2011-09-08	PLoS Genet	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 individuals	10q22.2	ADK	rs7924176-G	0.43	6E-18		0.105	[0.08-0.13] unit decrease	Illumina [521741]	N
1167	chr10	76358087	76358088	rs138458666	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	10q22.2		rs138458666-T	0.423462089	7E-9				Illumina [7417619] (imputed)	N
1167	chr10	76363106	76363107	rs10824211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q22.2		rs10824211-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1167	chr10	76400163	76400164	rs17747401	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	10q22.2	ADK	rs17747401-T	0.378	1E-7		1.2	[NR]	Illumina [8207076] (imputed)	N
1167	chr10	76414146	76414147	rs138519360	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Drug experimentation measurement	22,572 European ancestry individuals	NA	10q22.2	ADK	rs138519360-T	0.0013	4E-8		0.879	[0.567-1.192] unit increase	Illumina [11434023] (imputed)	N
1168	chr10	76423738	76423739	rs946185	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.2	NR	rs946185-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1168	chr10	76468850	76468851	rs1189553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs1189553-T	0.768706	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1168	chr10	76468942	76468943	rs150465356	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	10q22.2	NR	rs150465356-?	NR	4E-6		1.4645	[0.7-2.23] unit decrease	Illumina [at least 560000] (imputed)	N
1168	chr10	76472812	76472813	rs34545342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.2	ADK	rs34545342-G	0.755947	4E-12		0.017871566	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr10	76479931	76479932	rs11001120	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q22.2	ADK	rs11001120-A	0.578691502390239	8E-7	(G_Dialister_HB)	0.24623	[0.15-0.34] unit increase	Illumina [7711310] (imputed)	N
1168	chr10	76484764	76484764	rs34166561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q22.2		rs34166561-TA	NR	1E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1168	chr10	76484764	76484764	rs34166561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q22.2	NR	rs34166561-TA	0.75889	8E-14		0.019389378	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr10	76486608	76486609	rs839705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q22.2		rs839705-T	NR	6E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1168	chr10	76490335	76490336	rs1098098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs1098098-T	0.769722	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
1168	chr10	76491046	76491047	rs1098099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q22.2		rs1098099-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1168	chr10	76503126	76503127	rs2485953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q22.2	NR	rs2485953-T	0.761432	3E-15		0.017095	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1168	chr10	76528851	76528852	rs80341670	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	KAT6B	rs80341670-T	0.971573	2E-8	(34 ms)	0.100031	[0.065-0.135] unit decrease	Affymetrix [10000000] (imputed)	N
1168	chr10	76528851	76528852	rs80341670	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.2	KAT6B	rs80341670-T	0.971573	1E-8	(32 ms)	0.101102	[0.066-0.136] unit decrease	Affymetrix [10000000] (imputed)	N
1169	chr10	76586785	76586786	rs574070865	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q22.2		rs574070865-?	NR	4E-6		0.8535855	[0.49-1.22] unit increase	Illumina [9875426] (imputed)	N
1169	chr10	76617856	76617857	rs12254441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q22.2		rs12254441-T	NR	4E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1169	chr10	76617856	76617857	rs12254441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q22.2		rs12254441-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1170	chr10	76703005	76703006	rs10466033	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	10q22.2	COMTD1, SPA17P1	rs10466033-G	0.0080	6E-6		0.437	[0.25-0.63] cup size increase	Illumina [7422970] (imputed)	N
1170	chr10	76728498	76728499	rs4372382	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	10q22.2	NR	rs4372382-T	0.049	5E-7		0.0259	[0.016-0.036] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1170	chr10	76748122	76748123	rs142771363	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KAT6B	rs142771363-?	NR	4E-9		2.69811	[NR] unit increase	Affymetrix [NR] (imputed)	N
1170	chr10	76771246	76771247	rs12772120	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q22.2	NR	rs12772120-?	NR	7E-6		1.25	[0.99-1.59]	Illumina [539000] (imputed)	N
1170	chr10	76807318	76807319	rs186851919	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q22.2		rs186851919-?	NR	2E-6		0.9272557	[0.55-1.31] unit increase	Illumina [9875426] (imputed)	N
1171	chr10	76808759	76808760	rs7919006	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	10q22.2	NR	rs7919006-G	0.95	4E-6	(females)	4.0	[NR] kg decrease	Illumina [318237]	N
1171	chr10	76812449	76812450	rs2395128	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	10q22.2	HLA-DRA	rs2395128-?		2E-7		1.5446734	[1.31-1.82]	Illumina [2612357]	N
1171	chr10	76812449	76812450	rs2395128	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	10q22.2	HLA-DRA	rs2395128-?	NR	9E-9		1.5015358	[1.31-1.73]	Illumina [2612357]	N
1171	chr10	76812449	76812450	rs2395128	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	10q22.2	HLA-DRA	rs2395128-?	NR	1E-8	(Adult)	1.6475215	[1.39-1.96]	Illumina [2612357]	N
1171	chr10	76822116	76822117	rs10762651	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	10q22.2	DUPD1	rs10762651-?		6E-6	(AA, case-control analysis)	1.85	[NR]	Affymetrix [up to 730090]	N
1171	chr10	76824353	76824354	rs11001274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q22.2		rs11001274-T	NR	7E-16		0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1171	chr10	76824353	76824354	rs11001274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.2		rs11001274-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1171	chr10	76825637	76825638	rs11001276	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10q22.2	NR	rs11001276-T	0.26	3E-8		1.0384216	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1171	chr10	76829756	76829757	rs11001278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q22.2		rs11001278-G	0.65214	9E-13		0.0152069	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1171	chr10	76829756	76829757	rs11001278	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q22.2	DUPD1, DUSP13	rs11001278-?	NR	1E-10		0.019293705	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
1171	chr10	76837009	76837010	rs4745764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.2		rs4745764-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1171	chr10	76838053	76838054	rs10762653	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	10q22.2	NR	rs10762653-?	NR	1E-6		0.0639	[0.038-0.09] unit increase	Illumina [at least 560000] (imputed)	N
1171	chr10	76839354	76839355	rs7475340	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting acetate	4,734 individuals	NA	10q22.2		rs7475340-G	0.538999154	8E-11		0.134989	[0.094-0.176] mmol/l decrease	Illumina [7701709] (imputed)	N
1171	chr10	76847489	76847490	rs7903537	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q22.2	DUSP13	rs7903537-C	0.477147	6E-9		0.0111542	[0.0074-0.0149] unit increase	Affymetrix [NR] (imputed)	N
1171	chr10	76847992	76847993	rs2395137	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DUSP13	5,363 Icelandic ancestry individuals	NA	10q22.2		rs2395137-C	0.3764	7E-117		0.410281	[0.38-0.45] unit decrease	Illumina [7506463] (imputed)	N
1171	chr10	76851502	76851503	rs6480769	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.2	DUSP13	rs6480769-T	0.38296875	2E-72	(DUSP13, 6525_17_3)	0.43307897	[0.39-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
1171	chr10	76854563	76854564	rs3088142	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	10q22.2		rs3088142-?	NR	1E-10		0.019	unit increase	NR [NR]	N
1171	chr10	76854563	76854564	rs3088142	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	10q22.2	DUSP13	rs3088142-T	0.4332	5E-8	(recessive model)	0.0173	[0.011-0.024] unit increase	Illumina [246328]	N
1171	chr10	76861679	76861680	rs6480771	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q22.2	NR	rs6480771-T	0.44831	3E-12		0.049622253	[0.036-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1171	chr10	76861679	76861680	rs6480771	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q22.2	DUSP13	rs6480771-C	0.415	8E-34	(Dual specificity protein phosphatase 13 isoform A, DUSP13.6525.17.3)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1171	chr10	76878546	76878547	rs144368377	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SAMD8	rs144368377-?	NR	1E-9	(female)	0.829082	[NR] unit increase	Affymetrix [NR] (imputed)	N
1171	chr10	76920198	76920199	rs2657283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q22.2		rs2657283-T	0.5884	2E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1172	chr10	76944946	76944947	rs4746270	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q22.2	NR	rs4746270-A	0.412	4E-10		0.00685089	[0.0047-0.009] unit increase	NR [9732723] (imputed)	N
1172	chr10	76944946	76944947	rs4746270	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q22.2	NR	rs4746270-A	0.406	4E-9		0.00872517	[0.0058-0.0116] unit decrease	NR [9732723] (imputed)	N
1172	chr10	76953024	76953025	rs2657294	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	10q22.2	NR	rs2657294-?	NR	5E-6		0.0411	[0.023-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
1173	chr10	77123420	77123421	rs74146603	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	10q22.2		rs74146603-?	NR	2E-7				Affymetrix [810906]	N
1173	chr10	77129160	77129161	rs144473309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q22.2	Intergenic	rs144473309-A	0.982	2E-6	(AA)	0.069	unit increase	Illumina [NR] (imputed)	N
1173	chr10	77140468	77140469	rs10824305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.2		rs10824305-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1173	chr10	77140863	77140864	rs7078507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10q22.2	RP11-399K21.11	rs7078507-G	0.60898	2E-16		0.018716259	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1173	chr10	77140863	77140864	rs7078507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs7078507-G	0.585478	1E-12				Affymetrix, Illumina [19905671] (imputed)	N
1173	chr10	77140863	77140864	rs7078507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q22.2	NR	rs7078507-G	0.609239	3E-14		0.016071	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1173	chr10	77151596	77151597	rs150952246	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	10q22.2	NR	rs150952246-C		3E-7		0.37	[0.21-0.53] unit increase	Illumina [NR] (imputed)	N
1173	chr10	77185309	77185310	rs10824307	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q22.2	ZNF503	rs10824307-G	0.335741	1E-9		0.729	[0.658 - 0.807]	Illumina [5400100] (imputed)	N
1173	chr10	77185309	77185310	rs10824307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q22.2	RP11-399K21.10	rs10824307-G	NR	4E-8		0.0162499	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1173	chr10	77185309	77185310	rs10824307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs10824307-C	0.610984	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
1173	chr10	77191440	77191441	rs55922628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q22.2	RP11-399K21.10	rs55922628-A	0.610798	2E-9		0.014199659	[0.0096-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr10	77210190	77210191	rs7072873	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q22.2	NR	rs7072873-T	0.538278	1E-13		0.0506382	[0.037-0.064] unit decrease	Affymetrix [17914406] (imputed)	N
1174	chr10	77216124	77216125	rs7924237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q22.2		rs7924237-G	0.558759	2E-11		0.014888375	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr10	77216726	77216727	rs11001397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q22.2	NR	rs11001397-T	0.558665	4E-14		0.014138	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1174	chr10	77216726	77216727	rs11001397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs11001397-T	0.53989	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
1174	chr10	77217079	77217080	rs71473777	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q22.2	ZNF503	rs71473777-A	0.880424	8E-10		0.0189191	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1174	chr10	77218226	77218226	rs58628285	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.2	LRMDA	rs58628285-G	0.4397	1E-27		0.0209	[0.017-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1174	chr10	77221513	77221514	rs11001398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q22.2		rs11001398-C	NR	7E-10		0.0387	[0.026-0.051] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1174	chr10	77221513	77221514	rs11001398	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q22.2	NR	rs11001398-?	NR	7E-8		0.11972	[0.076-0.163] unit decrease	Affymetrix [7794483] (imputed)	N
1174	chr10	77221513	77221514	rs11001398	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q22.2	NR	rs11001398-?	NR	5E-6	(female)	0.1103	[0.063-0.158] unit decrease	Affymetrix [7794483] (imputed)	N
1174	chr10	77221884	77221885	rs12412694	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q22.2	NR	rs12412694-?	NR	8E-6		2.54	[2.27-2.84]	Illumina [539000] (imputed)	N
1174	chr10	77231607	77231608	rs7898528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.2		rs7898528-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1174	chr10	77231607	77231608	rs7898528	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.2	NR	rs7898528-G	0.210373	4E-25		0.0391654	[0.032-0.047] unit increase	NR [19129689] (imputed)	N
1174	chr10	77242459	77242460	rs117082223	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	10q22.2	NR	rs117082223-?	NR	2E-6		169.3622	[101.17-237.56] unit increase	Illumina [5432814] (imputed)	N
1174	chr10	77242459	77242460	rs117082223	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	10q22.2	NR	rs117082223-?	NR	1E-6		169.5016	[101.61-237.39] unit increase	Illumina [5432814] (imputed)	N
1174	chr10	77244335	77244336	rs3012060	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q22.2	NR	rs3012060-T	0.1852	6E-10		0.0342	[0.023-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1174	chr10	77254222	77254223	rs72807485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q22.2		rs72807485-A	0.040525	1E-9		0.035492204	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr10	77280922	77280923	rs2915025	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q22.2	NR	rs2915025-G	0.9092437	2E-8		0.00800719	[0.0051-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
1174	chr10	77280922	77280923	rs2915025	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q22.2	NR	rs2915025-G	0.9092437	9E-7		0.008075	[0.0049-0.0113] unit increase	Affymetrix [16582965] (imputed)	N
1174	chr10	77282898	77282899	rs2915023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q22.2	NR	rs2915023-G	0.9029788	4E-8		0.0108118	[0.0067-0.0149] unit increase	Affymetrix [16585854] (imputed)	N
1174	chr10	77282898	77282899	rs2915023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q22.2	NR	rs2915023-G	0.9029788	8E-6		0.0101451	[0.0054-0.0148] unit increase	Affymetrix [16585866] (imputed)	N
1174	chr10	77293108	77293109	rs3012053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q22.2		rs3012053-G	0.714844	6E-10		0.01516314	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr10	77293108	77293109	rs3012053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q22.2		rs3012053-G	0.714852	4E-9		0.014354135	[0.0096-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr10	77293108	77293109	rs3012053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q22.2		rs3012053-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1174	chr10	77295842	77295843	rs10824316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q22.2	MIR606	rs10824316-C	NR	5E-8		0.0160076	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1174	chr10	77295956	77295957	rs9415106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q22.2	MIR606	rs9415106-G	NR	8E-9		0.0180326	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr10	77295956	77295957	rs9415106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q22.2	MIR606	rs9415106-G	NR	4E-9		0.018455	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1174	chr10	77295956	77295957	rs9415106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.2	NR	rs9415106-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1174	chr10	77295956	77295957	rs9415106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q22.2		rs9415106-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1174	chr10	77295956	77295957	rs9415106	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q22.2	NR	rs9415106-A	0.7138	1E-12		0.0142	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1174	chr10	77298608	77298609	rs2043090	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	10q22.2	intergenic	rs2043090-A	0.959	3E-6		0.119	[0.068-0.17] unit decrease	Illumina [6150213] (imputed)	N
1174	chr10	77310015	77310016	rs10762670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q22.2		rs10762670-C	0.498105272	3E-8		0.050712448	[0.033-0.069] unit decrease	Illumina [13429769] (imputed)	N
1174	chr10	77310015	77310016	rs10762670	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q22.2	NR	rs10762670-C	0.4949	7E-9		0.0505	[0.033-0.068] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1174	chr10	77314616	77314617	rs7900112	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q22.2		rs7900112-A	0.495584809	2E-10		0.9487103	[0.933468465-0.964201013]	Illumina [8919992] (imputed)	N
1174	chr10	77314616	77314617	rs7900112	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q22.2	C10orf11, ZNF503	rs7900112-T	0.51	2E-9		1.05	1.04-1.07	Illumina [12557761] (imputed)	N
1174	chr10	77321644	77321645	rs9702209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q22.2	NR	rs9702209-T	0.739684	7E-12		0.015199	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1174	chr10	77321644	77321645	rs9702209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q22.2	NR	rs9702209-T	0.739692	3E-11		0.01464	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1174	chr10	77323642	77323643	rs34907385	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q22.2	LRMDA	rs34907385-C	0.491	5E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1175	chr10	77346127	77346128	rs4093218	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.2	NR	rs4093218-T	0.766821	7E-11				Affymetrix, Illumina [24653286] (imputed)	N
1175	chr10	77356593	77356594	rs9416087	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.2	NR	rs9416087-?	NR	2E-33				Affymetrix [NR]	N
1175	chr10	77402905	77402906	rs79902961	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q22.2	NR	rs79902961-?	NR	5E-6		4.55	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1175	chr10	77435614	77435615	rs111307316	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	10q22.2		rs111307316-G	NR	2E-6		6.7967	[4.09-9.5] unit decrease	Illumina [NR] (imputed)	N
1175	chr10	77448434	77448435	rs7899719	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	10q22.2	NR	rs7899719-?		1E-6		83.24	[43.2-123.28] unit increase	Illumina [498648]	N
1176	chr10	77467019	77467020	rs11001477	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q22.2	NR	rs11001477-A	0.867321	4E-9		0.016042	[0.011-0.021] unit increase	NR [NR]	N
1176	chr10	77476642	77476643	rs1875163	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.2	NR	rs1875163-?	NR	3E-8				Affymetrix [NR]	N
1176	chr10	77511445	77511446	rs7090348	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	10q22.2	NR	rs7090348-C	NR	4E-6		1.68	[1.35-2.10]	Illumina [13976150] (imputed)	N
1176	chr10	77516356	77516357	rs74147195	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.2	NR	rs74147195-A	0.02091	8E-9	(HAL)	0.2042	NR unit increase	Illumina [1671387] (imputed)	N
1176	chr10	77574044	77574045	rs78886587	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LRMDA	rs78886587-?	NR	6E-10	(female)	1.91922	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1176	chr10	77591722	77591723	rs116578144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.2		rs116578144-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1177	chr10	77605723	77605724	rs12261071	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	10q22.2	NR	rs12261071-?	NR	7E-6				Illumina [5946283] (imputed)	N
1177	chr10	77620901	77620902	rs61578783	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q22.2	C10orf11	rs61578783-G	0.84349	1E-11		0.0171542	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
1177	chr10	77620901	77620902	rs61578783	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.2		rs61578783-?	NR	1E-10		0.0183848	[0.013-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1177	chr10	77634233	77634234	rs2146595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.2	NR	rs2146595-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1177	chr10	77634233	77634234	rs2146595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q22.2		rs2146595-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1177	chr10	77645228	77645229	rs10824347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q22.2	NA	rs10824347-A	0.7703	5E-11		0.0131	[0.0092-0.017] unit increase	NR [~ 27400000] (imputed)	N
1177	chr10	77647106	77647107	rs7099048	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.2	NR	rs7099048-G	0.4964	9E-10		0.0282	[0.019-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1177	chr10	77656508	77656509	rs4746339	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q22.2	NA	rs4746339-A	0.2601	1E-11		0.0131	[0.0094-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
1177	chr10	77659732	77659733	rs11594905	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10q22.2	LRMDA	rs11594905-A	0.13	2E-6	(conditional on rs2579762)	1.07	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1177	chr10	77659732	77659733	rs11594905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.2		rs11594905-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1177	chr10	77686740	77686741	rs4746340	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q22.3	C10orf11	rs4746340-C	0.203	3E-6		0.0338	[0.02-0.048] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1178	chr10	77737307	77737308	rs1951742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs1951742-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1178	chr10	77737307	77737308	rs1951742	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs1951742-A	0.206658	2E-15		0.0308329	[0.023-0.038] unit increase	NR [19129689] (imputed)	N
1178	chr10	77746652	77746653	rs1992011	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	10q22.3	NR	rs1992011-T	0.57	7E-9		0.03	[0.02-0.04] unit decrease	NR [9704453]	N
1178	chr10	77771193	77771194	rs7475916	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10q22.3	NR	rs7475916-G	0.6467	7E-9		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1178	chr10	77789847	77789848	rs12253878	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.3	ZNF503	rs12253878-?	NR	3E-7	(fructose; glucose; galactose)	2.9867163	[1.84-4.13] unit increase	Affymetrix [at least 2500000] (imputed)	N
1178	chr10	77814846	77814847	rs4237284	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q22.3	C10orf11	rs4237284-A	0.6024	4E-8		5.476	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1178	chr10	77827154	77827155	rs7909137	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.3	NR	rs7909137-?	NR	6E-6				Affymetrix [NR]	N
1178	chr10	77853149	77853150	rs2395340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.3		rs2395340-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1178	chr10	77856523	77856524	rs4745812	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.3		rs4745812-?	NR	7E-10		0.012105	[0.008-0.0162] unit decrease	Affymetrix [20259828] (imputed)	N
1179	chr10	77891245	77891246	rs12764182	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q22.3	NR	rs12764182-?	NR	1E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1179	chr10	77893685	77893686	rs67339103	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	10q22.3	LRMDA	rs67339103-A	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1179	chr10	77893685	77893686	rs67339103	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10q22.3	C10orf11	rs67339103-A	0.2163	2E-12		0.0172135	[0.012-0.022] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1179	chr10	77893685	77893686	rs67339103	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	10q22.3	LRMDA	rs67339103-A	NR	2E-11		1.0569633	[1.04-1.07]	Affymetrix, Illumina [8326000] (imputed)	N
1179	chr10	77893685	77893686	rs67339103	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	10q22.3	LRMDA	rs67339103-A	0.213	6E-10		0.01328	[0.0091-0.0175] unit increase	Affymetrix [11709857] (imputed)	N
1179	chr10	77893685	77893686	rs67339103	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	10q22.3	C10orf11	rs67339103-A	0.212	1E-13		0.01522	[0.011-0.019] unit increase	Affymetrix [11709857] (imputed)	N
1179	chr10	77894967	77894968	rs7898462	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10q22.3	C10orf11	rs7898462-G	0.22	2E-13	(EA)	0.018	[0.014-0.022] unit increase	NR [12082474] (imputed)	N
1179	chr10	77910790	77910791	rs11001639	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs11001639-C	0.185937	2E-10		0.0256569	[0.018-0.034] unit increase	NR [19129689] (imputed)	N
1179	chr10	77911031	77911032	rs10740455	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	10q22.3	C10orf11	rs10740455-A	0.08	7E-6			[NR]	Affymetrix [398699]	N
1179	chr10	77926203	77926204	rs10762701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q22.3		rs10762701-T	NR	1E-10		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1179	chr10	77929738	77929739	rs10824378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs10824378-A	0.363306	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
1179	chr10	77929738	77929739	rs10824378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q22.3	NR	rs10824378-A	0.242917	5E-12		0.015081	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1179	chr10	77932816	77932816	rs543893408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q22.3	C10orf11	rs543893408-TA	0.236877	3E-11		0.0174505	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr10	77932816	77932816	rs543893408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q22.3	C10orf11	rs543893408-TA	0.236888	4E-11		0.017361749	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1179	chr10	77932817	77932817	rs34848972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q22.3		rs34848972-TA	NR	6E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1179	chr10	77934653	77934654	rs398075322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q22.3		rs398075322-A	NR	3E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1179	chr10	77935344	77935345	rs11001667	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q22.3	C10orf11	rs11001667-G	0.22	1E-11		1.06	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1179	chr10	77936575	77936576	rs10458660	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q22.3	C10orf11	rs10458660-G	0.173	7E-10		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1179	chr10	77936668	77936669	rs10458661	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	10q22.3		rs10458661-G	0.552497006	4E-8		1.0646886	[1.041091872-1.08882002]	Illumina [8919992] (imputed)	N
1179	chr10	77937917	77937918	rs10824380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q22.3		rs10824380-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1179	chr10	77938241	77938242	rs4746372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs4746372-A	0.36377	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
1179	chr10	77938241	77938242	rs4746372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q22.3	NR	rs4746372-A	0.242258	8E-15		0.016847	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1179	chr10	77938241	77938242	rs4746372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs4746372-A	0.360385	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
1179	chr10	77938241	77938242	rs4746372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q22.3	NR	rs4746372-A	0.242244	3E-16		0.01768	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1179	chr10	77949819	77949820	rs16932995	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	10q22.3	LRMDA	rs16932995-G	NR	3E-10		1.14	[1.09-1.18]	NR [2286360] (imputed)	N
1180	chr10	78025212	78025213	rs1247471	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs1247471-G	0.372991	1E-8		0.0182944	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
1181	chr10	78150284	78150285	rs11001765	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	10q22.3	C10orf11	rs11001765-?	NR	4E-9		1.1312217	[1.09-1.18]	Illumina [13537761] (imputed)	N
1181	chr10	78157571	78157572	rs10509373	22180457	Kiyotani K	2011-12-16	Hum Mol Genet	A genome-wide association study identifies locus at 10q22 associated with clinical outcomes of adjuvant tamoxifen therapy for breast cancer patients in Japanese.	Response to tamoxifen in breast cancer	240 Japanese ancestry female cases	222 Japanese ancestry female cases	10q22.3	C10orf11	rs10509373-C	0.024	6E-9		4.51	[2.72-7.51]	Illumina [470796]	N
1181	chr10	78163767	78163768	rs1907342	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	4,680 European ancestry individuals	3,566 European ancestry individuals	10q22.3		rs1907342-G	0.167891536	6E-19				Illumina [7417619] (imputed)	N
1181	chr10	78167387	78167388	rs1907343	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs1907343-C	0.0698106	2E-9		0.0367639	[0.025-0.049] unit increase	NR [19129689] (imputed)	N
1181	chr10	78171665	78171666	rs117246174	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs117246174-G	0.0294749	9E-10		0.056856	[0.039-0.075] unit increase	NR [19129689] (imputed)	N
1181	chr10	78187871	78187872	rs17465450	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	10q22.3	NR	rs17465450-C	NR	4E-6		2.06	[1.52-2.80]	Illumina [510856]	N
1181	chr10	78189958	78189959	rs1873465	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	C10orf11	rs1873465-T	NR	1E-11		0.0827436	NR unit decrease	NR [NR] (imputed)	N
1181	chr10	78194811	78194812	rs1907350	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	C10orf11, KCNMA1	rs1907350-G	NR	2E-24		0.0634215	NR unit decrease	NR [NR] (imputed)	N
1181	chr10	78196611	78196612	rs11593840	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	10q22.3	C10orf11	rs11593840-A	NR	9E-24		0.14172	[0.11-0.17] unit decrease	Affymetrix [27512692] (imputed)	N
1181	chr10	78196611	78196612	rs11593840	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	NR	rs11593840-G	NR	2E-24		0.06	NR unit decrease	NR [NR] (imputed)	N
1181	chr10	78196611	78196612	rs11593840	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	10q22.3	C10orf11	rs11593840-?	NR	2E-12		1.1737089	[1.12-1.23]	Illumina [13436641] (imputed)	N
1181	chr10	78198106	78198107	rs1907352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs1907352-?	NR	1E-71				NR [~ 8900000] (imputed)	N
1181	chr10	78198106	78198107	rs1907352	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	10q22.3		rs1907352-G	0.41	1E-13		0.15	[0.11-0.19] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1181	chr10	78203592	78203593	rs11001783	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs11001783-A	0.441741	1E-71		0.0577463	[0.051-0.064] unit decrease	NR [19129689] (imputed)	N
1181	chr10	78209505	78209506	rs72642263	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	10q22.3	C10orf11	rs72642263-G	0.095	2E-16		0.33	[0.25-0.4] unit decrease	Affymetrix [339439]	N
1182	chr10	78270755	78270756	rs150189258	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LRMDA	rs150189258-?	NR	3E-9	(female)	0.569959	[NR] unit increase	Affymetrix [NR] (imputed)	N
1182	chr10	78279032	78279033	rs2579753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.3		rs2579753-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1182	chr10	78298379	78298380	rs7923176	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.3	NR	rs7923176-?	NR	2E-10				Affymetrix [NR]	N
1182	chr10	78299226	78299227	rs1907310	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q22.3	C10orf11	rs1907310-G	0.16651	6E-18		0.0213869	[0.017-0.026] unit increase	NR [13737936] (imputed)	N
1182	chr10	78299226	78299227	rs1907310	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.3		rs1907310-?	NR	2E-14		0.0210618	[0.016-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10q22.3	C10orf11	rs2637254-A	0.5108	4E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.3	C10orf11	rs2637254-A	0.5108	2E-21		0.0224	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.3	C10orf11	rs2637254-A	0.5108	3E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.3	C10orf11	rs2637254-A	0.5108	4E-34		0.0285	[0.024-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.3		rs2637254-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10q22.3	C10orf11	rs2637254-A	0.5126	4E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [27624732] (imputed)	N
1182	chr10	78312001	78312002	rs2637254	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10q22.3	C10orf11	rs2637254-A	0.51	5E-8		0.036	[0.022-0.05] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1182	chr10	78315223	78315224	rs11001819	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	10q22.3	C10orf11	rs11001819-G	0.506	6E-6		1.12	[1.07-1.18]	Affymetrix [28509962] (imputed)	N
1182	chr10	78315223	78315224	rs11001819	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	10q22.3	C10orf11	rs11001819-A	NR	1E-8		0.11	[0.073-0.147] unit decrease	Affymetrix [28509962] (imputed)	N
1182	chr10	78315223	78315224	rs11001819	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	10q22.3	C10orf11	rs11001819-?	NR	5E-8	(FEV1, Ever-smoking)			NR [~ 2500000] (imputed)	N
1182	chr10	78315223	78315224	rs11001819	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	10q22.3	C10orf11	rs11001819-G	0.52	3E-12	(FEV1)	0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	1E-7		1.09	[1.06-1.13]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	5E-10			[NR]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	3E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	5E-10			[NR]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	4E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	10q22.3	NR	rs2579762-C	0.46	2E-7		1.09	[1.05-1.13]	Affymetrix [9886854] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10q22.3	LRMDA	rs2579762-C	0.47	3E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1182	chr10	78318878	78318879	rs2579762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.3		rs2579762-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1182	chr10	78331317	78331318	rs2637266	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	10q22.3	C10orf11	rs2637266-?	NR	2E-6	(FEV1/FVC)			Affymetrix [246010]	N
1182	chr10	78360088	78360089	rs144097453	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	10q22.3	NR	rs144097453-T	0.0186	8E-8		4.23253	[2.49866352767363-7.16955795006269]	Illumina [7076963] (imputed)	N
1182	chr10	78377169	78377170	rs11497798	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	NR	rs11497798-T	NR	1E-15		0.0494425	NR unit increase	NR [NR] (imputed)	N
1182	chr10	78377289	78377292	rs199978639	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	NR	rs199978639-A	NR	5E-19		0.0560772	NR unit decrease	NR [NR] (imputed)	N
1182	chr10	78377572	78377573	rs11594897	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q22.3	NR	rs11594897-G	NR	2E-18		0.0552106	NR unit decrease	NR [NR] (imputed)	N
1183	chr10	78446865	78446866	rs6480836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs6480836-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1183	chr10	78472386	78472387	rs185122378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs185122378-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1184	chr10	78581152	78581153	rs1616405	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	10q22.3	KCNMA1	rs1616405-A	0.49	9E-6				Affymetrix, Illumina [8002429] (imputed)	N
1184	chr10	78596131	78596132	rs116957978	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	10q22.3	KCNMA1	rs116957978-G	0.016	4E-6		2.64	[2.23-3.05]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1184	chr10	78615457	78615458	rs10824456	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	10q22.3		rs10824456-C	0.5769	1E-8		0.9519907	[0.936078732-0.968173173]	Affymetrix, Illumina [NR] (imputed)	N
1184	chr10	78638366	78638367	rs79713414	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.3	NR	rs79713414-T	0.01568	5E-9	(RAB14)	0.02121	NR unit increase	Illumina [1671387] (imputed)	N
1185	chr10	78646535	78646536	rs2116830	21708048	Jiao H	2011-06-28	BMC Med Genomics	Genome wide association study identifies KCNMA1 contributing to human obesity.	Obesity	164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals	4,674 European ancestry morbidly obese individuals, 5,663 European ancestry lean individuals	10q22.3	KCNMA1	rs2116830-G	0.80	3E-10		1.26	[1.12-1.41]	Affymetrix [406177]	N
1185	chr10	78649601	78649602	rs2288839	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	10q22.3	KCNMA1, RP11-443A13.5	rs2288839-G	0.47	3E-6		0.0712	[0.042-0.101] unit decrease	Illumina [544877]	N
1185	chr10	78695466	78695467	rs10762738	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	10q22.3	KCNMA1	rs10762738-G	0.497	2E-10		1.24	[NR]	Illumina [8207076] (imputed)	N
1185	chr10	78709314	78709315	rs12771435	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	10q22.3	KCNMA1-AS1, KCNMA1	rs12771435-T	0.7423	5E-6		0.0617	[0.035-0.088] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1185	chr10	78723789	78723790	rs72803372	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	10q22.3	NR	rs72803372-?	NR	6E-6		0.4946	[0.28-0.71] unit increase	Illumina [at least 560000] (imputed)	N
1185	chr10	78760958	78760959	rs11001963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q22.3		rs11001963-T	NR	4E-10		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1185	chr10	78760958	78760959	rs11001963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.3	NR	rs11001963-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1185	chr10	78760958	78760959	rs11001963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q22.3		rs11001963-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1185	chr10	78760958	78760959	rs11001963	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q22.3	NA	rs11001963-T	0.55	9E-11		0.0112	[0.0079-0.0145] unit increase	NR [~ 27400000] (imputed)	N
1185	chr10	78763296	78763297	rs1907719	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	10q22.3	KCNMA1	rs1907719-T	NR	1E-7		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1186	chr10	78797958	78797959	rs11001981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs11001981-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1186	chr10	78807019	78807020	rs17480656	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs17480656-G	0.119118	7E-11		0.031163	[0.022-0.041] unit decrease	NR [19129689] (imputed)	N
1186	chr10	78808179	78808180	rs1247769	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q22.3	NR	rs1247769-?	NR	3E-9				Illumina [7760689] (imputed)	N
1186	chr10	78808179	78808180	rs1247769	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q22.3	NR	rs1247769-?	NR	2E-8				Illumina [7760689] (imputed)	N
1187	chr10	78912180	78912181	rs79087352	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	10q22.3	NR	rs79087352-?	NR	6E-6		17.931	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1188	chr10	79040509	79040510	rs7095163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs7095163-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1188	chr10	79044595	79044596	rs193226531	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	10q22.3	KCNMA1	rs193226531-C	0.003	2E-6		2.11742	NR	Affymetrix, Illumina [30341632] (imputed)	N
1188	chr10	79052065	79052066	rs10824516	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q22.3	NR	rs10824516-?	NR	7E-7		0.137089	[0.083-0.191] unit increase	NR [13958389] (imputed)	N
1188	chr10	79052065	79052066	rs10824516	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q22.3	NR	rs10824516-G		1E-29		0.13	[0.11-0.15] unit increase	NR [NR]	N
1188	chr10	79057945	79057946	rs16934486	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	10q22.3		rs16934486-T	0.03777	5E-6		2.671	[1.75199999999999-4.072]	Affymetrix [7975321] (imputed)	N
1188	chr10	79061457	79061458	rs7895108	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q22.3	KCNMA1	rs7895108-?		3E-69				Affymetrix, Illumina [NR] (imputed)	N
1188	chr10	79061457	79061458	rs7895108	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q22.3	KCNMA1	rs7895108-T	0.3513	8E-19		8.866	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1188	chr10	79063541	79063542	rs10824518	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q22.3	NR	rs10824518-A	0.3531	3E-16		0.0597	[0.045-0.074] unit decrease	Illumina [~ 10600000] (imputed)	N
1188	chr10	79063541	79063542	rs10824518	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	10q22.3	KCNMA1	rs10824518-?	NR	3E-22		1.0764263	[1.06-1.09]	Illumina [13762925] (imputed)	N
1188	chr10	79083870	79083871	rs10824526	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q22.3		rs10824526-T	0.38246	4E-7		0.035506	[0.022-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
1188	chr10	79114689	79114690	rs7903931	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q22.3	NR	rs7903931-?	NR	1E-10		0.13626	[0.095-0.178] unit increase	NR [13958389] (imputed)	N
1188	chr10	79130973	79130974	rs76150532	30054556	Akiyama M	2018-07-27	J Hum Genet	Genome-wide association study suggests four variants influencing outcomes with ranibizumab therapy in exudative age-related macular degeneration.	Response to ranibizumab in age-related macular degeneration (exudative)	361 Japanese ancestry responder cases, 73 Japanese ancestry non-responder controls	363 Japanese ancestry responder cases, 122 Japanese ancestry non-responder controls	10q22.3	KCNMA1	rs76150532-A	0.086	2E-6		2.6	[1.74-3.88]	Illumina [6826359] (imputed)	N
1188	chr10	79152479	79152480	rs10824537	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	10q22.3	NR	rs10824537-?	NR	3E-6		0.0804918	[0.047-0.114] unit increase	NR [13958389] (imputed)	N
1188	chr10	79154536	79154537	rs207675	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Smoking cessation in chronic obstructive pulmonary disease	717 European ancestry sustained quitter cases, 2,175 European ancestry continuous smoker cases	NA	10q22.3	KCNMA1	rs207675-?	NR	6E-8		0.35	[0.23-0.47] unit decrease	Illumina [7807992] (imputed)	N
1188	chr10	79158711	79158712	rs7097255	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10q22.3	KCNMA1	rs7097255-C	0.1161	8E-6	(EA)			Illumina [4404269] (imputed)	N
1188	chr10	79165829	79165830	rs35806	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	10q22.3	NR	rs35806-?	NR	3E-8			[NR]	NR [1665663]	N
1189	chr10	79203697	79203698	rs7923095	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		10q22.3	NR	rs7923095-A	NR	9E-6		1.1317531	[1.07-1.2]	Affymetrix [5734850] (imputed)	N
1189	chr10	79211261	79211262	rs603788	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	10q22.3	KCNMA1	rs603788-G	0.5	9E-7	(EA, MAP, Age 70-79)	2.08	[1.26-2.9] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1189	chr10	79211261	79211262	rs603788	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	10q22.3	KCNMA1	rs603788-G	0.5	9E-7	(EA, DBP, Age 70-79)	1.73	[1.04-2.42] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1189	chr10	79218029	79218030	rs11594258	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	10q22.3	KCNMA1	rs11594258-A	0.822	9E-6				Affymetrix, Illumina [NR] (imputed)	N
1189	chr10	79249803	79249804	rs866539	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	10q22.3	NR	rs866539-C	0.068	7E-8		2.399	[1.744-3.299]	Illumina [7585599] (imputed)	N
1189	chr10	79252445	79252446	rs816850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q22.3		rs816850-C	NR	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1189	chr10	79252445	79252446	rs816850	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q22.3	KCNMA1	rs816850-C	0.2532	3E-11		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1189	chr10	79253260	79253261	rs3127447	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q22.3	KCNMA1	rs3127447-C	0.3283	3E-8		5.539	NR z score increase	Illumina [26237160] (imputed)	N
1189	chr10	79253260	79253261	rs3127447	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	10q22.3	KCNMA1	rs3127447-A	0.529	6E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1189	chr10	79291867	79291868	rs816828	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q22.3	KCNMA1	rs816828-T	0.5131	2E-10		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1190	chr10	79333414	79333415	rs59274585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KCNMA1	rs59274585-?	NR	2E-8		2.33483	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1190	chr10	79356396	79356397	rs2253201	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	10q22.3	NR	rs2253201-G	0.063	4E-8		2.474	[1.79-3.419]	Illumina [7585599] (imputed)	N
1190	chr10	79401315	79401316	rs7071206	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	10q22.3	KCNMA1	rs7071206-T	0.790543	5E-9		0.0543	[0.036-0.073] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1190	chr10	79401315	79401316	rs7071206	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q22.3	KCNMA1	rs7071206-T	0.78	5E-19		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1190	chr10	79411739	79411740	rs1877998	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.3		rs1877998-?	NR	2E-31		0.0303167	[0.025-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1190	chr10	79411739	79411740	rs1877998	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q22.3	KCNMA1	rs1877998-G	0.818187	4E-8	(men)	0.0366528	[0.024-0.05] unit increase	NR [17166351] (imputed)	N
1190	chr10	79411739	79411740	rs1877998	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q22.3	KCNMA1	rs1877998-G	0.817642	2E-15		0.0342877	[0.026-0.043] unit increase	NR [17166351] (imputed)	N
1190	chr10	79411739	79411740	rs1877998	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q22.3	KCNMA1	rs1877998-G	0.817166	1E-8	(women)	0.0327206	[0.021-0.044] unit increase	NR [17166351] (imputed)	N
1190	chr10	79416366	79416367	rs4979905	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q22.3	KCNMA1	rs4979905-C	0.82101	3E-29		0.0269394	[0.022-0.032] unit increase	NR [13737936] (imputed)	N
1190	chr10	79416366	79416367	rs4979905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.3		rs4979905-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1190	chr10	79416900	79416901	rs10824560	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.3		rs10824560-?	NR	3E-32		0.0308177	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1191	chr10	79430142	79430143	rs114936111	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (spine)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	10q22.3	KCNMA1	rs114936111-A	0.22	4E-7		0.16	[0.1-0.22] g/cm2 increase	Illumina [NR] (imputed)	N
1191	chr10	79444752	79444753	rs4979906	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	10q22.3	KCNMA1	rs4979906-G	0.186	7E-6	(EA)	1.23	[0.98-1.55]	Affymetrix [up to 2366858] (imputed)	N
1191	chr10	79530212	79530213	rs2579174	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q22.3		rs2579174-?	NR	2E-13		0.00698942	[0.0051-0.0089] unit decrease	NR [NR]	N
1191	chr10	79538733	79538734	rs17516020	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs17516020-A	0.264337	7E-19		0.0315282	[0.025-0.038] unit increase	NR [19129689] (imputed)	N
1191	chr10	79540834	79540835	rs12261589	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q22.3	DLG5	rs12261589-A	0.012	4E-6	(Sedentary activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1191	chr10	79541638	79541639	rs2579162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q22.3	NR	rs2579162-C	0.709234	2E-8		0.00435639	[0.0025-0.0062] unit increase	Affymetrix [16582909] (imputed)	N
1191	chr10	79541638	79541639	rs2579162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q22.3	NR	rs2579162-C	0.709234	1E-6		0.00426887	[0.0022-0.0063] unit increase	Affymetrix [16582965] (imputed)	N
1191	chr10	79543739	79543740	rs117543413	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.3	AL450306.1	rs117543413-T	0.0176	2E-21		0.0689	[0.055-0.083] unit decrease	Affymetrix [18391927] (imputed)	N
1191	chr10	79545993	79545994	rs2579155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	10q22.3		rs2579155-C	0.579101	5E-9		0.0201289	[0.013-0.027] unit increase	Illumina [13478866] (imputed)	N
1191	chr10	79552091	79552092	rs2165046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs2165046-T	0.385489	6E-10				Affymetrix, Illumina [24649327] (imputed)	N
1191	chr10	79557401	79557402	rs56044675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs56044675-A	NR	9E-10		0.0258	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1192	chr10	79572586	79572587	rs149380977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs149380977-?	NR	9E-34				NR [~ 8900000] (imputed)	N
1192	chr10	79574077	79574078	rs11002301	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q22.3	DLG5	rs11002301-A	0.34	1E-16		8.28	z-score increase	Affymetrix [4314223] (imputed)	N
1192	chr10	79579250	79579251	rs2289308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs2289308-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1192	chr10	79594930	79594931	rs11002309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q22.3	NR	rs11002309-T	0.340114	8E-11		0.012677	[0.0089-0.0165] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1192	chr10	79605414	79605415	rs1248675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q22.3		rs1248675-G	NR	3E-13		0.0186	[0.014-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1192	chr10	79619460	79619461	rs2579136	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	10q22.3	DLG5	rs2579136-?	0.2929999999999999	2E-7		1.1330788	[1.08-1.19]	Affymetrix, Illumina [7701827] (imputed)	N
1192	chr10	79619460	79619461	rs2579136	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q22.3	DLG5	rs2579136-?	NR	4E-10		0.4368	[0.29-0.59] unit increase	Affymetrix [11100000] (imputed)	N
1192	chr10	79636160	79636161	rs11002319	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	10q22.3	DLG5	rs11002319-?	NR	5E-26		0.05091	[0.041-0.06] unit increase novel	Illumina [6108953] (imputed)	N
1192	chr10	79644058	79644059	rs17439906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs17439906-G	NR	4E-17		0.046	[0.035-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1192	chr10	79649652	79649653	rs11002322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q22.3		rs11002322-T	NR	9E-33		0.0243	[0.02-0.028] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	10q22.3		rs7099526-G	0.227843	2E-30		0.0475719	[0.039-0.056] unit increase	Illumina [13476165] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	10q22.3		rs7099526-?	NR	1E-7		1.366	[1.217-1.533]	Affymetrix [7975321] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	10q22.3	DLG5	rs7099526-?	NR	2E-18		0.0024	[0.0018-0.003] unit increase	Affymetrix [21347608] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	10q22.3	DLG5	rs7099526-?	NR	3E-33		0.0054	[0.0044-0.0064] unit increase	Affymetrix [21347608] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q22.3	DLG5	rs7099526-C	0.692229	7E-34		0.00300337	[0.0025-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q22.3	DLG5	rs7099526-C	0.692225	1E-37		0.0053295	[0.0045-0.0062] unit decrease	Affymetrix [13995440] (imputed)	N
1192	chr10	79657704	79657705	rs7099526	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q22.3	DLG5	rs7099526-G	0.31	2E-16		8.22	z-score increase	Affymetrix [4311822] (imputed)	N
1192	chr10	79659933	79659934	rs61855849	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	10q22.3		rs61855849-?	NR	4E-7		1.271	[1.158-1.394]	Affymetrix [7975321] (imputed)	N
1192	chr10	79660124	79660125	rs10430531	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q22.3	DLG5	rs10430531-C	0.26	5E-27		10.8	z-score increase	Affymetrix [4312306] (imputed)	N
1192	chr10	79662099	79662100	rs116913913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs116913913-T	NR	2E-14		0.0384	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1192	chr10	79680433	79680434	rs754466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q22.3		rs754466-T	NR	7E-154		0.0577	[0.053-0.062] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1192	chr10	79680433	79680434	rs754466	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q22.3	DLG5	rs754466-A	0.746709	7E-192		0.0172669	[0.016-0.018] unit decrease	Affymetrix [13995440] (imputed)	N
1192	chr10	79680433	79680434	rs754466	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	10q22.3	DLG5	rs754466-T	0.24	6E-10		3.5	[2.20-4.80] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1192	chr10	79680513	79680514	rs754465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q22.3		rs754465-A	NR	9E-21		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1192	chr10	79680513	79680514	rs754465	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q22.3	DLG5	rs754465-?		8E-28		0.0443	[0.036-0.052] unit decrease	Illumina [31500000] (imputed)	N
1192	chr10	79680513	79680514	rs754465	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q22.3	DLG5	rs754465-?		2E-9		0.0212	[0.014-0.028] unit decrease	Illumina [31500000] (imputed)	N
1192	chr10	79680513	79680514	rs754465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	10q22.3	DLG5	rs754465-?	NR	1E-8		0.02215	[0.015-0.03] unit increase	Illumina [6108953] (imputed)	N
1192	chr10	79681129	79681130	rs56088422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs56088422-A	NR	5E-43		0.0513	[0.044-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1192	chr10	79681129	79681130	rs56088422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q22.3	NR	rs56088422-A	NR	8E-12		0.0255	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1192	chr10	79681226	79681227	rs1248898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q22.3		rs1248898-C	NR	6E-22		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1192	chr10	79688207	79688208	rs1650146	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	10q22.3	NR	rs1650146-?	NR	3E-17		0.04346	[0.033-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1193	chr10	79700053	79700054	rs1248890	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q22.3		rs1248890-?	NR	4E-17		0.00771313	[0.0059-0.0095] unit decrease	NR [NR]	N
1193	chr10	79700070	79700071	rs138426338	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q22.3	NR	rs138426338-A	0.00976571	2E-8		0.200396	[0.13-0.27] unit decrease	Affymetrix [17914406] (imputed)	N
1193	chr10	79701362	79701363	rs11002341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q22.3		rs11002341-C	NR	3E-25		0.0159	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1193	chr10	79709724	79709725	rs11002344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q22.3		rs11002344-A	0.285696	1E-8		0.0133766	[0.0088-0.018] unit decrease	Illumina [13479295] (imputed)	N
1193	chr10	79745268	79745269	rs2559658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs2559658-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1193	chr10	79745268	79745269	rs2559658	24629169	Ising M	2014-04-08	Genes Brain Behav	Genetic effects on information processing speed are moderated by age--converging results from three samples.	Executive function (trail making test B)	890 European ancestry individuals	NA	10q22.3	POLR3A	rs2559658-?		7E-6				Illumina [~ 290000]	N
1193	chr10	79803589	79803590	rs7090135	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs7090135-?	NR	1E-7				Affymetrix [NR]	N
1193	chr10	79813693	79813694	rs117144066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs117144066-A	NR	5E-10		0.0277	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1194	chr10	79829560	79829561	rs117479047	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q22.3		rs117479047-?	NR	9E-7		1.8363923	[1.11-2.57] unit decrease	Illumina [9875426] (imputed)	N
1194	chr10	79829560	79829561	rs117479047	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10q22.3		rs117479047-?	NR	4E-8		0.104	[0.047-0.232]	Illumina [9842460] (imputed)	N
1194	chr10	79829560	79829561	rs117479047	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	39 Black or African American cases, 22,410 Black or African American controls	NA	10q22.3		rs117479047-?	NR	2E-6		0.054	[0.022-0.132]	Illumina [20847880] (imputed)	N
1194	chr10	79839575	79839575	rs34539319	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10q22.3	RPS24	rs34539319-A	NR	2E-6		1.9384114	[1.15-2.72] unit decrease	Illumina [> 6200000] (imputed)	N
1194	chr10	79846132	79846133	rs139044580	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q22.3	RPS24	rs139044580-T	0.00687437002694567	9E-6		0.014924	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1194	chr10	79919555	79919556	rs2264317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs2264317-C	NR	4E-16		0.0266	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1194	chr10	79929475	79929476	rs1149756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q22.3		rs1149756-A	NR	2E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1195	chr10	79972458	79972459	rs151083076	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.3	NR	rs151083076-C	0.01742	6E-10	(IGHG2)	1.65	NR unit increase	Illumina [1671387] (imputed)	N
1195	chr10	79980506	79980507	rs1249150	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q22.3	NA	rs1249150-A	0.7123	6E-8		0.0102	[0.0065-0.0139] unit increase	NR [~ 27400000] (imputed)	N
1195	chr10	80028338	80028339	rs2913115	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	10q22.3	NR	rs2913115-?	NR	2E-16		0.28	[0.2-0.36] unit increase	Illumina [at least 830937] (imputed)	N
1196	chr10	80100860	80100861	rs2395528	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	10q22.3	intergenic	rs2395528-T	0.23	6E-6	(maternal warmth)	1.46	[NR] unit decrease	Perlegen [429901]	N
1196	chr10	80143701	80143702	rs12765688	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.3	NR	rs12765688-?	NR	6E-7				Affymetrix [NR]	N
1196	chr10	80200606	80200607	rs7894696	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	10q22.3	LOC107984245	rs7894696-T	0.232	3E-6		0.155	[NR] unit increase	Illumina [625127]	N
1197	chr10	80217465	80217466	rs12767022	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q22.3	NR	rs12767022-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1197	chr10	80217465	80217466	rs12767022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q22.3		rs12767022-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1197	chr10	80236998	80236999	rs11817544	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q22.3	NR	rs11817544-C	NR	5E-15		1.09	[1.07-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1197	chr10	80236998	80236999	rs11817544	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	10q22.3	NR	rs11817544-C	0.793	2E-12		1.165	[1.12-1.22]	Affymetrix, Illumina [10186136] (imputed)	N
1197	chr10	80242769	80242770	rs575792008	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia treated with cranial radiation	962 European ancestry individuals	260 individuals	10q22.3	NR	rs575792008-A	NR	2E-8		7.7	[4.96-10.44] unit increase	Illumina [> 9000000] (imputed)	N
1197	chr10	80244622	80244623	rs4554825	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	10q22.3	ZMIZ1-AS	rs4554825-C	0.766	8E-12		1.142	NR	Illumina [7742602] (imputed)	N
1197	chr10	80251976	80251977	rs56002941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q22.3		rs56002941-G	NR	2E-11		0.1322	[0.094-0.171] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1197	chr10	80260938	80260939	rs56879585	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	10q22.3		rs56879585-T	NR	7E-9		0.8665455	[0.82557205912336-0.909552476001195]	Illumina [8919992] (imputed)	N
1197	chr10	80292951	80292952	rs2570541	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q22.3	NR	rs2570541-?	NR	1E-22				Affymetrix [NR]	N
1197	chr10	80334160	80334161	rs164241	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	10q22.3	NR	rs164241-C	0.9107834	3E-6		1.1350738	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1197	chr10	80334160	80334161	rs164241	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	10q22.3	NR	rs164241-T	0.0892166	2E-6		1.143	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1197	chr10	80342953	80342954	rs11002605	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	10q22.3		rs11002605-?	NR	2E-6		1.204		NR [577656]	N
1198	chr10	80387683	80387684	rs1025561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q22.3	Intergenic	rs1025561-A	0.696	6E-7	(AA)	0.019	unit increase	Illumina [NR] (imputed)	N
1198	chr10	80390266	80390267	rs2593149	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q22.3	Intergenic	rs2593149-T	0.694	6E-7	(AA)	0.018	unit increase	Illumina [NR] (imputed)	N
1198	chr10	80396849	80396850	rs1434432	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q22.3	Intergenic	rs1434432-C	0.628	9E-7	(AA)	0.017	unit increase	Illumina [NR] (imputed)	N
1198	chr10	80418633	80418634	rs16936223	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.3	RPS24	rs16936223-?	NR	9E-6	(hypoxanthine)	0.4628904	[0.26-0.67] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1199	chr10	80504269	80504270	rs157981	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	10q22.3	NR	rs157981-C	NR	6E-6		1.201	[NR]	Illumina [4867007] (imputed)	N
1199	chr10	80508899	80508900	rs727100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs727100-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1199	chr10	80509346	80509347	rs12266954	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs12266954-T	0.127488	3E-12		0.0323346	[0.023-0.041] unit decrease	NR [19129689] (imputed)	N
1199	chr10	80515080	80515081	rs7900239	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q22.3	intergenic	rs7900239-A	0.1	9E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1199	chr10	80579789	80579790	rs1866585	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.3	PPIF	rs1866585-?	NR	6E-6	(LPE 18:1)	0.42580435	[0.24-0.61] unit increase	Affymetrix [at least 2500000] (imputed)	N
1200	chr10	80619135	80619136	rs12261068	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	10q22.3	NR	rs12261068-A	0.98	9E-7	(Asian)	0.88	[0.53-1.23] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1200	chr10	80685057	80685058	rs7072491	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	10q22.3	NR	rs7072491-?	NR	4E-6		0.0920138	[0.053-0.131] unit increase	NR [13958389] (imputed)	N
1200	chr10	80687934	80687935	rs7910571	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	10q22.3	NR	rs7910571-T		6E-6		0.1169	[0.066-0.167] SD units decrease	NR [10700000] (imputed)	N
1200	chr10	80726416	80726417	rs118072283	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	10q22.3	NR	rs118072283-?	NR	6E-6		0.3425	[0.19-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1201	chr10	80755928	80755929	rs77772562	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Trunk fat/peripheral fat ratio	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	10q22.3		rs77772562-A	NR	5E-8		0.18	unit increase	NR [6137607] (imputed)	N
1201	chr10	80767205	80767206	rs10824699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	10q22.3	NR	rs10824699-G	NR	5E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1201	chr10	80772590	80772591	rs6480914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.3	NR	rs6480914-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1201	chr10	80772590	80772591	rs6480914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q22.3		rs6480914-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1201	chr10	80781800	80781801	rs142514101	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10q22.3	ZMIZ1-AS1	rs142514101-A	0.0018	8E-6		0.4927	[0.28-0.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q22.3		rs12783396-C	NR	3E-15		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q22.3		rs12783396-C	NR	1E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q22.3		rs12783396-C	NR	1E-8		0.0146	[0.0095-0.0197] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs12783396-C	0.24132	2E-16		0.021208175	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs12783396-C	0.203125	6E-20				Affymetrix, Illumina [24332387] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q22.3	NR	rs12783396-C	0.240036	1E-21		0.020933	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1201	chr10	80787845	80787846	rs12783396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs12783396-C	0.208369	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
1201	chr10	80788867	80788868	rs796667047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs796667047-C	0.239631	1E-9		0.0163615	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr10	80791932	80791933	rs11814929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs11814929-T	0.216144	7E-12				Affymetrix, Illumina [20825802] (imputed)	N
1201	chr10	80800087	80800088	rs35141569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs35141569-T	0.241902	4E-18		0.022514278	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr10	80800087	80800088	rs35141569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs35141569-G	0.759896	1E-18				Affymetrix, Illumina [22063850] (imputed)	N
1201	chr10	80800163	80800163	rs530263367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs530263367-AAAAC	0.62577	2E-10		0.016392265	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1201	chr10	80800317	80800318	rs11002791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q22.3	ZMIZ1-AS1	rs11002791-A	0.3158	9E-11		0.02492341	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1201	chr10	80800973	80800974	rs7080849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q22.3	NR	rs7080849-T	0.759431	1E-20		0.020557	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1201	chr10	80800973	80800974	rs7080849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q22.3		rs7080849-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1201	chr10	80804715	80804716	rs697248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q22.3		rs697248-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1201	chr10	80805015	80805016	rs67372909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs67372909-C	0.241714	8E-23		0.025684347	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr10	80805015	80805016	rs67372909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs67372909-C	0.241931	2E-46		0.037598636	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1201	chr10	80805015	80805016	rs67372909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs67372909-C	0.241818	2E-12		0.018351397	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1201	chr10	80805015	80805016	rs67372909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.3	ZMIZ1-AS1	rs67372909-C	0.241783	7E-9		0.01506557	[0.01-0.0202] unit decrease	Affymetrix [93095623] (imputed)	N
1201	chr10	80805015	80805016	rs67372909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q22.3		rs67372909-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1201	chr10	80805255	80805256	rs12778018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q22.3	NR	rs12778018-G	0.241147	2E-12		0.016029	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1201	chr10	80819131	80819132	rs704017	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	10q22.3		rs704017-?	NR	3E-9	(Colorectal polyp)	1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
1201	chr10	80819131	80819132	rs704017	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	10q22.3		rs704017-?	NR	7E-10		1.12	[1.08-1.17]	Illumina [NR] (imputed)	N
1201	chr10	80819131	80819132	rs704017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10q22.3		rs704017-G	0.342908608	2E-10		0.110225864	[0.076-0.144] unit increase	Illumina [13428297] (imputed)	N
1201	chr10	80819131	80819132	rs704017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10q22.3		rs704017-G	NR	2E-12		0.0887	[0.064-0.113] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1201	chr10	80819131	80819132	rs704017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q22.3		rs704017-G	NR	4E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1201	chr10	80819131	80819132	rs704017	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	10q22.3		rs704017-G	0.344166543	1E-9		1.1166658	[1.077679122-1.157062862]	Illumina [8919992] (imputed)	N
1201	chr10	80819131	80819132	rs704017	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q22.3	NR	rs704017-A	0.428254	9E-19		0.0185451	[0.014-0.023] unit increase	NR [NR]	N
1201	chr10	80819131	80819132	rs704017	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	10q22.3	NR	rs704017-G	0.6	3E-16		1.1	[1.08-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
1201	chr10	80819131	80819132	rs704017	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	10q22.3	ZMIZ1	rs704017-G	0.33	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1201	chr10	80819131	80819132	rs704017	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q22.3	ZMIZ1-AS1, ZMIZ1, POLR3A	rs704017-G	0.5846	5E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1201	chr10	80819131	80819132	rs704017	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	10q22.3	NR	rs704017-G	0.562	2E-8	(EA)	1.0752687	[1.04-1.1]	Affymetrix, Illumina [12931465] (imputed)	N
1201	chr10	80819131	80819132	rs704017	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10q22.3	LOC283050	rs704017-?	0.349	7E-6		1.0952903	[1.05-1.14]	Illumina [6774630] (imputed)	N
1201	chr10	80819131	80819132	rs704017	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q22.3	NR	rs704017-G	0.32	2E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1201	chr10	80819131	80819132	rs704017	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	10q22.3	AS1, ZMIZ1	rs704017-G	0.32	2E-8	(East Asian)	1.1	[1.06-1.13]	Affymetrix, Illumina [2400000] (imputed)	N
1201	chr10	80825896	80825897	rs11002805	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	10q22.3		rs11002805-A	0.367526915	2E-10		1.1461935	[1.099206692-1.195188918]	Illumina [8919992] (imputed)	N
1201	chr10	80826832	80826833	rs77911174	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	10q22.3	ZMIZ1	rs77911174-G	0.634	5E-20		1.1641443	NR	Illumina [7742602] (imputed)	N
1201	chr10	80827631	80827632	rs4980020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q22.3		rs4980020-A	0.366506557	2E-10		0.13821167	[0.096-0.181] unit increase	Illumina [13406905] (imputed)	N
1201	chr10	80835997	80835998	rs12412705	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q22.3	NR	rs12412705-C	NR	7E-12		1.068	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1201	chr10	80835997	80835998	rs12412705	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	10q22.3	NR	rs12412705-C	0.343	7E-10		1.114	[1.08-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
1201	chr10	80841147	80841148	rs704010	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q22.3		rs704010-?	NR	2E-7		1.07761	[1.05-1.11]	NR [682398]	N
1201	chr10	80841147	80841148	rs704010	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q22.3		rs704010-T	NR	3E-38		1.08	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1201	chr10	80841147	80841148	rs704010	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q22.3	ZMZ1	rs704010-T	0.38	2E-35	(EA)	1.07	[1.05-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1201	chr10	80841147	80841148	rs704010	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10q22.3	NR	rs704010-T	0.38	3E-15		1.08	[1.06-1.1]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1201	chr10	80841147	80841148	rs704010	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10q22.3	NR	rs704010-T	0.38	3E-23		1.08	[1.06-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1201	chr10	80841147	80841148	rs704010	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q22.3	ZMIZ1	rs704010-T	0.38	7E-22		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1201	chr10	80841147	80841148	rs704010	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q22.3	ZMIZ1	rs704010-A	0.39	4E-9		1.07	[1.03-1.11]	Illumina [582886]	N
1201	chr10	80845410	80845411	rs1250009	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10q22.3		rs1250009-G	NR	4E-9		1.0778	NR	Affymetrix [7846216] (imputed)	N
1201	chr10	80852377	80852378	rs1268974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	10q22.3		rs1268974-G	NR	2E-11		0.0695	[0.049-0.09] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1201	chr10	80852377	80852378	rs1268974	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q22.3	NR	rs1268974-G	0.6132	4E-36	(EA)	0.0793	[0.067-0.092] unit decrease	Illumina [~ 11800000] (imputed)	N
1201	chr10	80871062	80871063	rs2486695	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	10q22.3	ZMIZ1	rs2486695-G	0.613	2E-12		0.037	[0.027-0.047] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1202	chr10	80874522	80874523	rs1658323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1658323-C	0.630292	3E-8	(160 ms)	0.0311204	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1202	chr10	80874522	80874523	rs1658323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1658323-C	0.630292	2E-8	(172 ms)	0.0306733	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1202	chr10	80874522	80874523	rs1658323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1658323-C	0.630292	1E-8	(170 ms)	0.0308832	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1202	chr10	80874522	80874523	rs1658323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1658323-C	0.630292	1E-8	(158 ms)	0.0319294	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1202	chr10	80874522	80874523	rs1658323	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	10q22.3	ZMIZ1	rs1658323-C	0.613	4E-9	(women)	0.044	[0.03-0.058] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1202	chr10	80884205	80884206	rs7921677	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.3	NR	rs7921677-G	0.02265	2E-8	(PSMB6)	0.04976	NR unit increase	Illumina [1671387] (imputed)	N
1202	chr10	80894560	80894561	rs11002846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.3	NR	rs11002846-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80894560	80894561	rs11002846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs11002846-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	5E-9	(-96 ms)	0.0330053	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	4E-9	(-94 ms)	0.0329033	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	4E-8	(-86 ms)	0.0305426	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	3E-8	(-98 ms)	0.031269	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	3E-8	(-104 ms)	0.0309481	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	2E-8	(-92 ms)	0.0312045	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	2E-8	(-90 ms)	0.031336	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-G	0.497881	1E-8	(-88 ms)	0.0313988	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q22.3	ZMIZ1	rs1769758-T	0.504927	2E-11		0.015110254	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q22.3	ZMIZ1	rs1769758-T	0.5	1E-11		0.5	[0.36-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1202	chr10	80898968	80898969	rs1769758	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q22.3	ZMIZ1	rs1769758-T	0.4967	4E-11		0.5088	[0.36-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1202	chr10	80905541	80905542	rs10824722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q22.3	ZMIZ1	rs10824722-T	0.246437	2E-15		0.020912074	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1202	chr10	80907146	80907147	rs780159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q22.3	ZMIZ1	rs780159-A	NR	1E-8		0.0167086	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1202	chr10	80907146	80907147	rs780159	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.3	NR	rs780159-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q22.3	NR	rs780159-G	0.56	3E-24		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1202	chr10	80907146	80907147	rs780159	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q22.3	NR	rs780159-G	0.56	5E-8				Affymetrix [2446094] (imputed)	N
1202	chr10	80907146	80907147	rs780159	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	10q22.3	NR	rs780159-A	0.4287	3E-20		0.0163	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q22.3	NA	rs780159-A	0.4292	3E-14		0.0133	[0.01-0.0166] unit decrease	NR [~ 27400000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q22.3	ZMIZ1	rs780159-G	0.594	9E-9		0.0209	[0.014-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q22.3	ZMIZ1	rs780159-G	0.5817	6E-9	(EA)	0.0223	[0.015-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q22.3	ZMIZ1	rs780159-G	0.5817	2E-6	(EA, women)	0.0236	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	10q22.3	ZMIZ1	rs780159-G	0.594	5E-7		0.0214	[0.013-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	10q22.3	ZMIZ1	rs780159-G	0.5817	3E-7	(EA)	0.0224	[0.014-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q22.3	ZMIZ1	rs780159-?	0.594	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80907146	80907147	rs780159	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q22.3	ZMIZ1	rs780159-?	0.5817	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1202	chr10	80917285	80917286	rs10824723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs10824723-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80918516	80918517	rs779933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	10q22.3	ZMIZ1	rs779933-A	NR	2E-12		0.0222523	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1202	chr10	80918516	80918517	rs779933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	10q22.3	ZMIZ1	rs779933-A	NR	2E-13		0.023329	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
1202	chr10	80918516	80918517	rs779933	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs779933-?	NR	3E-36				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80918516	80918517	rs779933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q22.3		rs779933-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1202	chr10	80918516	80918517	rs779933	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	10q22.3	ZMIZ1	rs779933-A	0.25	8E-8		0.032	[0.018-0.046] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1202	chr10	80919675	80919676	rs703996	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs703996-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80923861	80923862	rs1749824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	10q22.3	ZMIZ1	rs1749824-A	NR	1E-10		0.0201429	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1202	chr10	80924208	80924208	rs762009034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10q22.3	ZMIZ1	rs762009034-CT	NR	3E-8		0.021376	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1202	chr10	80925013	80925014	rs1658319	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q22.3	ZMIZ1	rs1658319-?	NR	8E-16		0.024268106	[0.018-0.03] unit decrease	Illumina [27896057] (imputed)	N
1202	chr10	80925324	80925325	rs72816263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q22.3	ZMIZ1	rs72816263-A	0.243843	1E-9		0.01567365	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1202	chr10	80925576	80925577	rs7916441	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q22.3		rs7916441-?	NR	3E-11		0.00612755	[0.0043-0.0079] unit increase	NR [NR]	N
1202	chr10	80925576	80925577	rs7916441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q22.3		rs7916441-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1202	chr10	80925576	80925577	rs7916441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs7916441-?	NR	3E-68				NR [~ 8900000] (imputed)	N
1202	chr10	80925576	80925577	rs7916441	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	10q22.3	NR	rs7916441-G	0.576	2E-7	(EA)	0.051	[0.031-0.071] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1202	chr10	80925576	80925577	rs7916441	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q22.3	PPIF	rs7916441-?	NR	6E-10	(Conditioned on rs2145998)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1202	chr10	80928320	80928321	rs11597947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q22.3	NR	rs11597947-T	0.243523	8E-12		0.015525	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1202	chr10	80928792	80928793	rs1815314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q22.3	ZMIZ1	rs1815314-A	NR	3E-8		0.0158934	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1202	chr10	80928792	80928793	rs1815314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q22.3	ZMIZ1	rs1815314-A	NR	1E-9		0.017415	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1202	chr10	80928792	80928793	rs1815314	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	10q22.3	ZMIZ1	rs1815314-A	0.422	5E-14		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1202	chr10	80930697	80930698	rs7914926	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	10q22.3	NR	rs7914926-G	0.4283	3E-7		0.021	[0.013-0.029] unit increase	Affymetrix [27624732] (imputed)	N
1202	chr10	80931480	80931481	rs780151	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	10q22.3	ZMIZ1	rs780151-G	0.57	2E-9		1.13	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1202	chr10	80938498	80938499	rs16937003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q22.3	ZMIZ1	rs16937003-A	0.02034	7E-20		0.0736621	[0.058-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr10	80941416	80941417	rs703984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q22.3		rs703984-C	NR	1E-11		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1202	chr10	80941416	80941417	rs703984	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q22.3	NR	rs703984-C	0.4135	4E-14		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1202	chr10	80941884	80941885	rs703983	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		10q22.3	ZMIZ1	rs703983-A	NR	5E-6		1.1341687		Affymetrix, Illumina [1918233] (imputed)	N
1202	chr10	80941935	80941936	rs3915932	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q22.3	ZMIZ1	rs3915932-G	0.585024	3E-15		0.015788	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs12571751-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q22.3	ZMIZ1	rs12571751-G	0.4503	3E-11	(EA)	0.0664	[0.047-0.086] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q22.3	ZMIZ1	rs12571751-G	0.4503	2E-20		0.067	[0.053-0.081] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q22.3	ZMIZ1	rs12571751-A	0.51	2E-10		1.09	[1.06-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q22.3	ZMIZ1	rs12571751-A	NR	6E-7	(men)	1.07	[1.04-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q22.3	ZMIZ1	rs12571751-A	NR	1E-6	(female)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1202	chr10	80942630	80942631	rs12571751	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q22.3	ZMIZ1	rs12571751-A	0.517057010272647	1E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1202	chr10	80942854	80942855	rs703981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q22.3		rs703981-C	NR	1E-26		0.0668	[0.054-0.079] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1202	chr10	80942854	80942855	rs703981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q22.3		rs703981-C	0.447153228	1E-10		0.06385712	[0.044-0.083] unit decrease	Illumina [13134967] (imputed)	N
1202	chr10	80942854	80942855	rs703981	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q22.3	NR	rs703981-G	0.5439	2E-40		0.0613	[0.052-0.07] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1202	chr10	80943840	80943841	rs703980	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q22.3	NR	rs703980-G	0.5556	2E-14		0.0669	[0.05-0.084] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1202	chr10	80943840	80943841	rs703980	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q22.3		rs703980-A	0.449189131	1E-14		0.93830585	[0.923216132-0.953642255]	Illumina [8919992] (imputed)	N
1202	chr10	80943840	80943841	rs703980	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q22.3	ZMIZ1	rs703980-G	NR	3E-8	(Japanese)	1.08981	[1.05708-1.12355]	Illumina [7521072] (imputed)	N
1202	chr10	80944146	80944147	rs703978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q22.3		rs703978-G	NR	1E-10		0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1202	chr10	80944146	80944147	rs703978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	10q22.3		rs703978-G	0.705958	2E-9		0.0230326	[0.016-0.031] unit increase	Illumina [13475706] (imputed)	N
1202	chr10	80944146	80944147	rs703978	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q22.3	ZMIZ1	rs703978-C	0.2949	4E-8	(East Asian)	0.0344	[0.022-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1202	chr10	80944146	80944147	rs703978	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	10q22.3	ZMIZ1	rs703978-C	0.31	2E-9		1.11	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1202	chr10	80944146	80944147	rs703978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10q22.3		rs703978-?	NR	1E-62				NR [~ 8900000] (imputed)	N
1202	chr10	80944146	80944147	rs703978	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	10q22.3	ZMIZ1	rs703978-?	NR	3E-10		1.0795639	NR	Affymetrix [9154080] (imputed)	N
1202	chr10	80944146	80944147	rs703978	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	10q22.3	ZMIZ1	rs703978-?	NR	2E-23		1.0807306	NR	Affymetrix [9154080] (imputed)	N
1202	chr10	80944229	80944230	rs703977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q22.3		rs703977-G	0.451350193	1E-14		0.07121048	[0.053-0.089] unit decrease	Illumina [13429769] (imputed)	N
1202	chr10	80947437	80947438	rs697239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q22.3		rs697239-C	NR	2E-26		0.0802	[0.065-0.095] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1202	chr10	80947437	80947438	rs697239	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q22.3	NR	rs697239-C	0.4453	5E-54		0.0587	[0.051-0.066] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1202	chr10	80947667	80947668	rs697238	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	10q22.3	ZMIZ1	rs697238-T	0.420872	3E-20		0.1085557	[0.085-0.132] unit increase	Affymetrix [7288503] (imputed)	N
1202	chr10	80949987	80949988	rs74142329	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10q22.3	ZMIZ1	rs74142329-T	0.0321	4E-9		0.06102558	[0.041-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1202	chr10	80951130	80951130	rs34204798	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q22.3	ZMIZ1	rs34204798-C	0.568	5E-19		1.06	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1202	chr10	80951130	80951130	rs34204798	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q22.3	ZMIZ1	rs34204798-C	0.56	3E-14		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
1202	chr10	80952825	80952826	rs703972	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q22.3	NR	rs703972-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1202	chr10	80952825	80952826	rs703972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q22.3		rs703972-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1202	chr10	80952825	80952826	rs703972	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.3	ZMIZ1	rs703972-G	0.533	2E-29		1.07	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1202	chr10	80953135	80953136	rs703970	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q22.3	ZMIZ1	rs703970-C	NR	5E-6	(5 degree of freedom test)	1.01	[0.99-1.03]	NR [1252901] (imputed)	N
1202	chr10	80954250	80954251	rs703966	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q22.3	ZMIZ1	rs703966-G	0.581117	5E-16		0.0156745	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1202	chr10	80955066	80955067	rs703965	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	10q22.3	ZMIZ1	rs703965-T	0.453038	6E-9		0.0052878	[0.0035-0.0071] unit decrease	Affymetrix [9463307] (imputed)	N
1202	chr10	80955066	80955067	rs703965	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	10q22.3	ZMIZ1	rs703965-?	NR	8E-6				Affymetrix [1769948] (imputed)	N
1202	chr10	80955066	80955067	rs703965	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	10q22.3	NR	rs703965-?	0.54	8E-6		1.15	[NR]	Affymetrix [1769948] (imputed)	N
1202	chr10	80958587	80958588	rs1250562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q22.3		rs1250562-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1202	chr10	80958628	80958629	rs12360138	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine/thyroxine ratio	623 Croatian ancestry individuals	NA	10q22.3	ZMIZ1	rs12360138-G	NR	4E-7		0.83	[0.52-1.14] nmol/L decrease	NR [8752746] (imputed)	N
1202	chr10	80958790	80958790	rs34025327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q22.3		rs34025327-CA	NR	6E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1202	chr10	80959972	80959973	rs10128264	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	10q22.3	ZMIZ1	rs10128264-C	NR	1E-6	(ParVAS)	1.18	[0.71-1.65] unit decrease	Illumina [586062]	N
1202	chr10	80960827	80960828	rs2802369	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	10q22.3	ZMIZ1	rs2802369-C	NR	7E-6	(ESR)	9.37	[5.33-13.41] unit decrease	Illumina [586062]	N
1202	chr10	80964974	80964975	rs753270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q22.3	NR	rs753270-C	NR	6E-10		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1202	chr10	80964974	80964975	rs753270	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q22.3	ZMIZ1	rs753270-T	0.416465397344019	3E-11		0.0528	[0.037-0.068] unit decrease	NR [5035015] (imputed)	N
1202	chr10	80999929	80999929	rs5786388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q22.3		rs5786388-CA	NR	4E-17		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1202	chr10	80999929	80999929	rs5786388	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q22.3	NR	rs5786388-CA	0.578	1E-19		0.002082	[0.0016-0.0025] unit increase	Affymetrix [NR] (imputed)	N
1202	chr10	81000823	81000824	rs11812395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q22.3	ZMIZ1	rs11812395-G	0.497935	3E-12		0.015739402	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81003145	81003146	rs76109311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs76109311-G	0.618267	5E-12				Affymetrix, Illumina [17210439] (imputed)	N
1203	chr10	81003145	81003146	rs76109311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q22.3	NR	rs76109311-G	0.615985	5E-14		0.015401	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1203	chr10	81010249	81010250	rs1250597	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q22.3	ZMIZ1	rs1250597-A	0.405167	1E-9		0.00853653	[0.0058-0.0113] unit decrease	Affymetrix [12370749]	N
1203	chr10	81010622	81010623	rs1250599	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs1250599-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1203	chr10	81015895	81015896	rs11593576	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	10q22.3	ZMIZ1	rs11593576-?		1E-6		1.09	1.05-1.12	Illumina [87827]	N
1203	chr10	81015895	81015896	rs11593576	20526339	Quan C	2010-06-06	Nat Genet	Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.	Vitiligo	1,117 Han Chinese ancestry cases, 1,429 Han Chinese ancestry controls	6,623 East Asian ancestry cases, 10,740 East Asian ancestry controls	10q22.3	ZMIZ1	rs11593576-?	0.805	8E-7		1.14	[1.09-1.20]	Illumina [493909]	N
1203	chr10	81016111	81016112	rs1250535	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10q22.3	ZMIZ1	rs1250535-C	0.3328	3E-6		0.0336	[0.019-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1203	chr10	81016111	81016112	rs1250535	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10q22.3	ZMIZ1	rs1250535-C	0.3328	3E-6		0.0336	[0.019-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1203	chr10	81021840	81021841	rs4980054	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q22.3	PPIF	rs4980054-?	NR	6E-6	(valine)	0.17006509	[0.096-0.244] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1203	chr10	81023701	81023702	rs77528634	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	10q22.3	NR	rs77528634-G	NR	3E-6		8.08	[NR]	Illumina [NR] (imputed)	N
1203	chr10	81032531	81032532	rs1250546	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q22.3	NR	rs1250546-A	0.58	3E-19	(EA)	1.1170506	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1203	chr10	81032531	81032532	rs1250546	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250546-A	0.579	7E-7		1.1		Illumina [111236] (imputed)	N
1203	chr10	81032531	81032532	rs1250546	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q22.3	intergenic	rs1250546-A	0.604	3E-18		1.096	[1.065-1.128]	Affymetrix, Illumina [1230000] (imputed)	N
1203	chr10	81032884	81032885	rs1250544	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	10q22.3	ZMIZ1	rs1250544-G	NR	1E-7		1.128	NR	Illumina [up to 11532644] (imputed)	N
1203	chr10	81032884	81032885	rs1250544	22482804	Ellinghaus D	2012-04-06	Am J Hum Genet	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	10q22.3	ZMIZ1	rs1250544-G	NR	7E-14	(same-effect analysis)	1.16	[NR]	Affymetrix, Illumina, Perlegen [1116213] (imputed)	N
1203	chr10	81034669	81034670	rs1250542	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250542-A	0.37	4E-7		1.15	[NR]	Affymetrix, Illumina [2529394]	N
1203	chr10	81034912	81034913	rs1250541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q22.3		rs1250541-C	NR	2E-10		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1203	chr10	81036006	81036007	rs1250540	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	10q22.3	ZMIZ1	rs1250540-G	0.35	2E-6		1.12	[1.02-1.22]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1203	chr10	81042474	81042475	rs1250573	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	10q22.3		rs1250573-?	NR	1E-6		0.04	NR unit decrease	NR [5890016] (imputed)	N
1203	chr10	81042474	81042475	rs1250573	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250573-?	NR	2E-22	(subset analysis)			Illumina [130052]	N
1203	chr10	81043572	81043573	rs1108617	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	10q22.3	NR	rs1108617-A		3E-11		1.07		NR [8016731] (imputed)	N
1203	chr10	81043742	81043743	rs1108618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q22.3	ZMIZ1	rs1108618-G	0.431867	4E-11		0.014763373	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81045206	81045207	rs1250569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q22.3		rs1250569-C	NR	5E-12		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1203	chr10	81045206	81045207	rs1250569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	10q22.3	ZMIZ1	rs1250569-C	0.4417	2E-9		0.02190282	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1203	chr10	81045206	81045207	rs1250569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10q22.3	ZMIZ1	rs1250569-C	0.4417	1E-11		0.02447501	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr10	81045206	81045207	rs1250569	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	10q22.3	ZMIZ1	rs1250569-T	0.48	3E-7		1.3	[1.18-1.44]	Illumina [549616] (imputed)	N
1203	chr10	81045279	81045280	rs1250568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs1250568-C	0.434028	8E-12				Affymetrix, Illumina [23114412] (imputed)	N
1203	chr10	81045279	81045280	rs1250568	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250568-?		1E-14		1.1538163		Illumina [252970]	N
1203	chr10	81045279	81045280	rs1250568	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250568-C	NA	4E-15				Illumina [252970]	N
1203	chr10	81046264	81046265	rs1250567	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q22.3	ZMIZ1-AS1, ZMIZ1, POLR3A	rs1250567-C	0.4405	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1203	chr10	81046452	81046453	rs1250566	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	10q22.3	ZMIZ1	rs1250566-A	NR	9E-6		0.7581	NR	Illumina [up to 4495750] (imputed)	N
1203	chr10	81046452	81046453	rs1250566	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q22.3	NR	rs1250566-?	NR	5E-20	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1203	chr10	81047382	81047383	rs1250563	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250563-C	0.29	1E-8				Illumina [7347414] (imputed)	N
1203	chr10	81047574	81047575	rs2802372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q22.3	ZMIZ1	rs2802372-C	0.436212	1E-14		0.017329402	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1203	chr10	81047574	81047575	rs2802372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q22.3	ZMIZ1	rs2802372-C	0.436166	1E-9		0.013656531	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1203	chr10	81047574	81047575	rs2802372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q22.3	ZMIZ1	rs2802372-C	0.436193	4E-21		0.021157902	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81047574	81047575	rs2802372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q22.3	NR	rs2802372-C	0.434926	7E-12		0.013907	[0.0099-0.0179] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1203	chr10	81047574	81047575	rs2802372	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	10q22.3	ZMIZ1	rs2802372-C	0.4345	7E-9		0.021148	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1203	chr10	81048610	81048611	rs1782645	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10q22.3	ZMIZ1	rs1782645-A	0.41	3E-15		1.1		Illumina [161311]	N
1203	chr10	81053559	81053560	rs1250559	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	10q22.3		rs1250559-A	0.4	1E-14		0.0643	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1203	chr10	81055625	81055626	rs12355688	23468962	Song C	2013-02-28	PLoS One	A genome-wide scan for breast cancer risk haplotypes among African American women.	Breast cancer	3,016 African American cases, 2,745 African American controls	NA	10q22.3		rs12355688-T	0.22	6E-6		1.24	[1.13-1.36]	Illumina [1006480]	N
1203	chr10	81058026	81058027	rs1250552	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	10q22.3	ZMIZ1	rs1250552-A	0.53	8E-17		1.1627907		Illumina [139553]	N
1203	chr10	81058026	81058027	rs1250552	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	10q22.3	ZMIZ1	rs1250552-?	0.53	9E-10		1.12	[1.09-1.16]	Illumina [292387]	N
1203	chr10	81059334	81059335	rs1250551	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q22.3	ZMIZ1	rs1250551-T	NR	2E-23		1.1009579	NR	Affymetrix, Illumina [8278136] (imputed)	N
1203	chr10	81060316	81060317	rs1250550	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	10q22.3	ZMIZ1	rs1250550-?	NR	9E-8		1.0931351		Illumina [~ 460000] (imputed)	N
1203	chr10	81060316	81060317	rs1250550	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q22.3	ZMIZ1	rs1250550-?		4E-12				Illumina [9725440] (imputed)	N
1203	chr10	81060316	81060317	rs1250550	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q22.3	ZMIZ1	rs1250550-?		9E-15				Illumina [9560910] (imputed)	N
1203	chr10	81060316	81060317	rs1250550	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	10q22.3	ZMIZ1	rs1250550-G	0.652	6E-7	(EA)	1.11		Illumina [128935]	N
1203	chr10	81060316	81060317	rs1250550	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	10q22.3	ZMIZ1	rs1250550-G	0.652	2E-9		1.11		Illumina [128935]	N
1203	chr10	81060316	81060317	rs1250550	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10q22.3	ZMIZ1	rs1250550-A	NR	6E-9		1.1	[1.09-1.12]	Illumina [465434]	N
1203	chr10	81060316	81060317	rs1250550	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10q22.3	ZMIZ1	rs1250550-G	0.669	1E-30		1.19	[1.15-1.23]	Affymetrix, Illumina [953241] (imputed)	N
1203	chr10	81060316	81060317	rs1250550	19915574	Imielinski M	2009-11-15	Nat Genet	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	10q22.3	ZMIZ1	rs1250550-?	0.68	6E-9		1.16	[1.09-1.25]	Illumina [~ 500000]	N
1203	chr10	81065773	81065774	rs1250557	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	10q22.3	ZMIZ1	rs1250557-?	NR	1E-8		0.1073	unit decrease	Illumina [up to 143074]	N
1203	chr10	81073027	81073037	rs146292747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q22.3		rs146292747-C	NR	5E-15		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q22.3	NR	rs1782652-T	0.619121	1E-8		0.00761397	[0.005-0.0102] unit increase	Affymetrix [16578495] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q22.3	NR	rs1782652-T	0.619045	3E-50		0.0124034	[0.011-0.014] unit increase	Affymetrix [16582909] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q22.3	NR	rs1782652-T	0.618815	1E-26		0.0136436	[0.011-0.016] unit increase	Affymetrix [16585854] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q22.3	NR	rs1782652-T	0.6193	3E-28		0.0124802	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q22.3	NR	rs1782652-T	0.619045	2E-36		0.0117273	[0.0098-0.0136] unit increase	Affymetrix [16582965] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q22.3	NR	rs1782652-T	0.618815	5E-16		0.0121809	[0.0093-0.0151] unit increase	Affymetrix [16585866] (imputed)	N
1203	chr10	81074124	81074125	rs1782652	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q22.3	NR	rs1782652-T	0.6193	6E-27		0.0127414	[0.01-0.015] unit increase	Affymetrix [16582614] (imputed)	N
1203	chr10	81077116	81077117	rs10824742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.3	ZMIZ1	rs10824742-G	NR	7E-9		0.0163951	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1203	chr10	81077764	81077765	rs12240802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q22.3	NR	rs12240802-C	NR	9E-10		0.0306	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1203	chr10	81078501	81078502	rs942792	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	10q22.3	ZMIZ1	rs942792-?	NR	5E-6	(conditioned on rs168622)	0.148	[0.085-0.211] unit decrease	Affymetrix [9346801] (imputed)	N
1203	chr10	81086838	81086839	rs111690487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q22.3	NR	rs111690487-A	NR	4E-11		0.0348	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1203	chr10	81088056	81088057	rs58287327	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q22.3	NR	rs58287327-G	0.745875	2E-10		0.015526	[0.011-0.02] unit decrease	NR [NR]	N
1203	chr10	81089161	81089162	rs11002928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.3	ZMIZ1	rs11002928-A	NR	6E-14		0.0260625	[0.019-0.033] unit increase	Affymetrix [321016] (imputed)	N
1203	chr10	81093065	81093066	rs141894884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q22.3	PPIF	rs141894884-G	NR	4E-8		0.0206891	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
1203	chr10	81096070	81096071	rs7077812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q22.3		rs7077812-C	NR	3E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1203	chr10	81096070	81096071	rs7077812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q22.3	PPIF	rs7077812-T	0.80509	2E-8		0.0140479	[0.0091-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1203	chr10	81096588	81096589	rs1317617	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q22.3	PPIF	rs1317617-G	0.805375	6E-14		0.00215401	[0.0016-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1203	chr10	81096588	81096589	rs1317617	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q22.3	ZMIZ1	rs1317617-G	0.7976	2E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1203	chr10	81097265	81097266	rs1892501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q22.3		rs1892501-G	NR	5E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1203	chr10	81099711	81099712	rs4979859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q22.3		rs4979859-T	0.723891	3E-13		0.018387632	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81105683	81105684	rs4246944	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	10q22.3		rs4246944-C	0.566413	4E-8		0.0228736	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1203	chr10	81105683	81105684	rs4246944	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	10q22.3		rs4246944-C	0.566413	4E-8		0.0227243	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1203	chr10	81105843	81105844	rs4980063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	10q22.3		rs4980063-A	0.566741	1E-8		0.0237129	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1203	chr10	81107134	81107135	rs2233713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	10q22.3		rs2233713-A	0.559023	2E-8		0.0232559	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1203	chr10	81107134	81107135	rs2233713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	10q22.3		rs2233713-A	0.559023	2E-8		0.0234548	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1203	chr10	81107134	81107135	rs2233713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q22.3	PPIF	rs2233713-C	0.441845	2E-9		0.01363157	[0.0092-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1203	chr10	81109457	81109458	rs2233719	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q22.3	NR	rs2233719-T	0.04355	5E-12	(SBDS)	0.03807	NR unit increase	Illumina [1671387] (imputed)	N
1203	chr10	81110306	81110307	rs1316313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.3	PPIF	rs1316313-T	NR	2E-10		0.0186761	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1203	chr10	81111035	81111036	rs876678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q22.3	PPIF	rs876678-T	NR	2E-17		0.0239742	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1203	chr10	81114059	81114060	rs7332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q22.3	PPIF	rs7332-A	0.4629	4E-11		0.0237027	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr10	81114812	81114813	rs8837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q22.3	PPIF	rs8837-C	NR	1E-8		0.0175544	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1203	chr10	81117175	81117175	rs11411545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q22.3	PPIF	rs11411545-AG	0.4626	4E-14		0.016960578	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81117175	81117175	rs11411545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.3	PPIF	rs11411545-AG	0.462574	6E-18		0.019627772	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81117175	81117175	rs11411545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.3	PPIF	rs11411545-AG	0.462557	2E-19		0.02045371	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81117236	81117237	rs7917610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q22.3	PPIF	rs7917610-C	0.4628	6E-11		0.02356267	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr10	81118463	81118464	rs10824747	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.3	PPIF	rs10824747-T	0.4994	5E-19		0.0168	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1203	chr10	81121695	81121696	rs2145998	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	10q22.3	NR	rs2145998-?	NR	3E-7		0.02961783	[0.018-0.041] unit decrease	Illumina [34656550] (imputed)	N
1203	chr10	81121695	81121696	rs2145998	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q22.3	PPIF	rs2145998-A	0.49	4E-13		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1203	chr10	81126379	81126380	rs10740497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q22.3	NR	rs10740497-C	0.461917	2E-20		0.020722171	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81126379	81126380	rs10740497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q22.3	NR	rs10740497-C	0.4619	9E-22		0.021468176	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr10	81131331	81131332	rs7092536	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q22.3	PPIF, ZCCHC24	rs7092536-?	NR	4E-18		0.025970127	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
1203	chr10	81132828	81132829	rs1923367	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	10q22.3	ZCCHC24	rs1923367-C	0.48	5E-24		0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1204	chr10	81136128	81136129	rs4980067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q22.3		rs4980067-A	NR	2E-59		0.0212	[0.019-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1204	chr10	81136128	81136129	rs4980067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q22.3		rs4980067-?	NR	3E-75				NR [~ 8900000] (imputed)	N
1204	chr10	81137195	81137196	rs10762861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q22.3	NR	rs10762861-G	0.695648	3E-12		0.014128	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1204	chr10	81137195	81137196	rs10762861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q22.3		rs10762861-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1204	chr10	81137700	81137702	rs139770255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q22.3	ZCCHC24	rs139770255-G	0.5055	1E-7		0.0342	[0.022-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1204	chr10	81138824	81138825	rs112612116	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q22.3	ZCCHC24	rs112612116-A		7E-6		0.56	[NR]	Illumina [up to 9464381] (imputed)	N
1204	chr10	81139133	81139134	rs1463598	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q22.3	ZCCHC24	rs1463598-C	0.642507	3E-15		0.0151582	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1204	chr10	81139133	81139134	rs1463598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q22.3		rs1463598-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1204	chr10	81139133	81139134	rs1463598	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q22.3		rs1463598-?	NR	2E-12		0.0152477	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
1204	chr10	81139461	81139462	rs941873	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	10q22.3	ZCCHC24	rs941873-G	0.589	7E-10	(AA)	0.044	[0.03-0.058] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1204	chr10	81139461	81139462	rs941873	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	10q22.3	ZCCHC24	rs941873-G		2E-31				Affymetrix, Illumina [17972582] (imputed)	N
1204	chr10	81139461	81139462	rs941873	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	10q22.3	ZCCHC24	rs941873-G	0.59	2E-8	(AA)	0.049	[0.031-0.067] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1204	chr10	81139461	81139462	rs941873	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	10q22.3	NR	rs941873-?	NR	2E-11		0.03876626	[0.027-0.05] unit decrease	Illumina [34656550] (imputed)	N
1204	chr10	81139461	81139462	rs941873	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	10q22.3	intergenic	rs941873-A	0.41	4E-7		0.044	[0.026-0.062] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1204	chr10	81140252	81140253	rs1013495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q22.3		rs1013495-T	0.650081	2E-18		0.0186499	[0.014-0.023] unit decrease	Illumina [13479295] (imputed)	N
1204	chr10	81140478	81140479	rs118016429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs118016429-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1204	chr10	81142364	81142365	rs6858	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q22.3	NR	rs6858-T	0.412108	4E-9		0.0187807	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
1204	chr10	81144696	81144697	rs4979863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q22.3		rs4979863-T	NR	3E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1204	chr10	81149796	81149797	rs2104157	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	10q22.3	ZCCHC24	rs2104157-A	0.28	4E-7	(male)	0.1	[0.061-0.139] unit increase	Illumina [11973598] (imputed)	N
1204	chr10	81152267	81152268	rs10458643	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q22.3	ZCCHC24	rs10458643-G	0.533833	5E-8		0.0108425	[0.007-0.0147] unit increase	Affymetrix [NR] (imputed)	N
1204	chr10	81157593	81157594	rs7900144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs7900144-G	0.252273	3E-9		0.015484225	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1204	chr10	81157593	81157594	rs7900144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs7900144-G	0.252279	6E-9		0.015233073	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q22.3		rs116052829-T	NR	2E-17		0.0322	[0.025-0.04] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q22.3		rs116052829-C	0.896	3E-9				Affymetrix [10369434] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs116052829-T	0.104186	3E-16		0.030214975	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs116052829-T	0.104181	1E-16		0.030558122	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs116052829-T	0.1007	2E-23				Affymetrix, Illumina [24588908] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q22.3	NR	rs116052829-T	0.104147	2E-25		0.032923	[0.027-0.039] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs116052829-T	0.1049	1E-10		0.03848108	[0.027-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1204	chr10	81164145	81164146	rs116052829	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	10q22.3	RP11-342M3.5, ZCCHC24	rs116052829-T	0.1048	3E-10		0.03758511	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1204	chr10	81164156	81164157	rs2279337	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q22.3	NR	rs2279337-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1204	chr10	81185313	81185314	rs181715218	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q22.3	NR	rs181715218-T	0.996	3E-6		1.3	[0.76-1.84] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1204	chr10	81194218	81194219	rs4980079	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA	10q22.3	ZCCHC24	rs4980079-T	0.45	5E-6		1.46	[1.30-1.62]	Illumina [2292247] (imputed)	N
1204	chr10	81199084	81199085	rs2395569	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	10q22.3	ZCCHC24	rs2395569-?	NR	5E-6				Affymetrix, Illumina [1184972]	N
1204	chr10	81199359	81199360	rs7906072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q22.3		rs7906072-T	NR	3E-8		0.0154	[0.0099-0.0209] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1204	chr10	81200233	81200234	rs57559820	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q22.3	PPIF	rs57559820-G	0.8134375	2E-6	(PPIF, 5248_68_2)	0.15152504	[0.089-0.214] unit decrease	Illumina [> 1000000] (imputed)	N
1204	chr10	81204306	81204307	rs78884079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10q22.3		rs78884079-T	0.136104	2E-9		0.0318804	[0.022-0.042] unit decrease	Illumina [13478928] (imputed)	N
1204	chr10	81228377	81228378	rs7910211	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q22.3	intergenic	rs7910211-T	0.8413	1E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1205	chr10	81318241	81318242	rs61860558	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	10q22.3	NR	rs61860558-T	0.32	8E-8		0.027	[0.017-0.037] unit decrease	Affymetrix [27624732] (imputed)	N
1205	chr10	81372501	81372502	rs2559728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q22.3		rs2559728-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1206	chr10	81505557	81505558	rs61863508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q22.3		rs61863508-C	NR	8E-9		0.0221	[0.015-0.03] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1208	chr10	81694949	81694950	rs1923539	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	RP11-479O17.4	rs1923539-A	0.25	5E-9	(SP-D)			Illumina [588352]	N
1208	chr10	81705432	81705433	rs7078012	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	SFTPD	rs7078012-T	0.13	5E-9	(SP-D)			Illumina [588352]	N
1208	chr10	81706323	81706324	rs721917	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	10q22.3	SFTPD	rs721917-G	0.42	9E-8		1.05	[1.03 -1.07]	Illumina [at least 109036]	N
1208	chr10	81706323	81706324	rs721917	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10q22.3	SFTPD	rs721917-G	0.42	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1208	chr10	81706323	81706324	rs721917	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q22.3	SFTPD	rs721917-A	0.5811	2E-15		0.0193	[0.015-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1208	chr10	81706323	81706324	rs721917	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	10q22.3	SFTPD	rs721917-G	0.42	2E-8		1.08	[1.05,1.11]	Affymetrix, Illumina [NR] (imputed)	N
1208	chr10	81706972	81706973	rs726288	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q22.3	SFTPD	rs726288-T	NR	1E-6		0.0666956	[-0.19821-0.3316] unit increase	Illumina [8380626] (imputed)	N
1208	chr10	81706972	81706973	rs726288	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	10q22.3	SFTPD	rs726288-T	0.18	8E-8	(East Asian)	0.19738	[0.13-0.27] unit increase	Illumina [8380626] (imputed)	N
1208	chr10	81706972	81706973	rs726288	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	10q22.3	SFTPD	rs726288-T	0.18	9E-9	(East Asian)	1.22	[1.14-1.31]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1208	chr10	81711066	81711067	rs7072378	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	SP D plasma levels	400 French ancestry individuals	NA	10q22.3		rs7072378-C	NR	2E-13		0.417	[0.31-0.53] ng/mL decrease	Illumina [5201092] (imputed)	N
1208	chr10	81715737	81715738	rs2146192	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q22.3	NR	rs2146192-?		2E-37	(SFTPD)	0.6692	[NR] unit decrease	Illumina [NR]	N
1208	chr10	81735980	81735981	rs3923564	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	SFTPD	rs3923564-G	0.04	2E-27	(SP-D)			Illumina [588352]	N
1208	chr10	81758018	81758019	rs61860458	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q22.3	NR	rs61860458-T	0.123	8E-6		0.43	[0.23-0.63] unit decrease	Illumina [9469131] (imputed)	N
1208	chr10	81788103	81788104	rs12220777	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	RP11-369J21.6, RP11-369J21.5	rs12220777-C	0.08	7E-11	(SP-D)			Illumina [588352]	N
1209	chr10	81847913	81847914	rs728616	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	RP11-369J21.2	rs728616-T	0.08	2E-12	(SP-D)			Illumina [588352]	N
1209	chr10	81863963	81863964	rs7905482	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q22.3	NR	rs7905482-?		2E-16	(SFTPD)	0.3154	[NR] unit increase	Illumina [NR]	N
1209	chr10	81882369	81882370	rs3851050	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	RP11-369J21.4	rs3851050-C	0.41	1E-11	(SP-D)			Illumina [588352]	N
1209	chr10	81911724	81911725	rs1953600	22936702	Hofmann S	2012-08-30	Eur Respir J	Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.	Sarcoidosis	637 European ancestry cases, 1,233 European ancestry controls	3,121 European ancestry cases, 4,284 European ancestry controls	10q22.3	ANXA11	rs1953600-?	NR	1E-6	(Chronic)			Affymetrix [677619]	N
1209	chr10	81916054	81916055	rs36073865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q22.3	NR	rs36073865-T	NR	7E-10		0.0247	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1210	chr10	81926701	81926702	rs1049550	32826979	Meguro A	2020-08-21	Commun Biol	Genetic control of CCL24, POR, and IL23R contributes to the pathogenesis of sarcoidosis.	Sarcoidosis	685 Japanese ancestry cases, 847 Japanese ancestry controls	907 Japanese ancestry cases, 252 European ancestry cases, 1,042 Japanese ancestry controls, 256 European ancestry controls	10q22.3	ANXA11	rs1049550-G	NR	1E-6		1.25	[1.14-1.37]	Illumina [530466] (imputed)	N
1210	chr10	81933747	81933748	rs6585424	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q22.3	ANXA11	rs6585424-G	0.13	1E-10	(SP-D)			Illumina [588352]	N
1210	chr10	81954280	81954281	rs11308079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	10q22.3		rs11308079-C	NR	1E-16		0.2922	[0.22-0.36] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
1210	chr10	82013133	82013134	rs1298908	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	10q22.3	MAT1A, ANXA11	rs1298908-G	0.22	9E-7	(AA, dominant )	1.36	[1.21-1.54]	Affymetrix [NR]	N
1210	chr10	82025815	82025816	rs1556896	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10q22.3	NR	rs1556896-G	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
1210	chr10	82039315	82039316	rs60204118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q22.3		rs60204118-T	NR	4E-8		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1210	chr10	82042623	82042624	rs10887718	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	10q22.3		rs10887718-C	0.471787	5E-9		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
1210	chr10	82042623	82042624	rs10887718	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	10q22.3	NR	rs10887718-T	0.527362	1E-10		0.012476	[0.0087-0.0163] unit decrease	Affymetrix [16668957] (imputed)	N
1210	chr10	82042781	82042782	rs12411742	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10q22.3		rs12411742-?	NR	10E-9		0.0116916	[0.0077-0.0157] unit increase	NR [6912294] (imputed)	N
1210	chr10	82050049	82050050	rs61859168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q22.3		rs61859168-C	NR	4E-11		0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1210	chr10	82050645	82050646	rs55899456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q22.3	NR	rs55899456-A	0.101852	2E-16				Affymetrix, Illumina [24558453] (imputed)	N
1211	chr10	82057987	82057988	rs10788549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q22.3		rs10788549-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1211	chr10	82085119	82085120	rs55838345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q23.1		rs55838345-C	NR	7E-9		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1211	chr10	82112872	82112873	rs1934697	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q23.1	DYDC1	rs1934697-T	0.528	4E-7		0.0014	[0.00081-0.00199] unit increase	Affymetrix [NR] (imputed)	N
1211	chr10	82113884	82113885	rs4933356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q23.1		rs4933356-T	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1211	chr10	82123267	82123267	rs35505876	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q23.1	DYDC2	rs35505876-A	0.4833	6E-7	(EA)	0.0017	[0.0011-0.0023] unit increase	Affymetrix [NR] (imputed)	N
1211	chr10	82141336	82141337	rs12412959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q23.1		rs12412959-A	0.134077	2E-9		0.01944884	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1211	chr10	82141336	82141337	rs12412959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q23.1		rs12412959-A	0.134102	1E-13		0.024056137	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1211	chr10	82141561	82141562	rs35698456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.1	NR	rs35698456-G	0.142801	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
1211	chr10	82142175	82142176	rs1953970	26651848	Rivera NV	2016-05-01	Am J Respir Crit Care Med	High-Density Genetic Mapping Identifies New Susceptibility Variants in Sarcoidosis Phenotypes and Shows Genomic-driven Phenotypic Differences.	Sarcoidosis (non-Lofgren's syndrome without extrapulmonary manifestations)	451 Swedish ancestry cases, 2,086 Swedish ancestry controls	NA	10q23.1	DYDC2, C10orf58, ANXA11, PLAC9, TSPAN14	rs1953970-A	0.6	4E-6		1.3968431	[1.22-1.61]	Illumina [118177]	N
1211	chr10	82152637	82152638	rs7916349	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q23.1	NR	rs7916349-A	0.54	4E-8		0.00999	[0.0063-0.0137] unit decrease	NR [NR]	N
1211	chr10	82153815	82153816	rs7902071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q23.1		rs7902071-T	NR	3E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1211	chr10	82154495	82154496	rs12772945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q23.1	NR	rs12772945-T	0.133614	9E-17		0.023545	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1211	chr10	82164089	82164090	rs35436409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q23.1		rs35436409-T	NR	7E-12		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1211	chr10	82164089	82164090	rs35436409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q23.1	NR	rs35436409-T	0.13373	3E-11		0.018742	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1211	chr10	82164654	82164655	rs66850362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	10q23.1	NR	rs66850362-C	NR	7E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1211	chr10	82171558	82171559	rs6585986	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	10q23.1	FAM213A	rs6585986-T	0.301	1E-9		0.084	[0.057-0.111] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1211	chr10	82179698	82179699	rs3802637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	10q23.1		rs3802637-C	NR	3E-8		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
1212	chr10	82191333	82191334	rs7074356	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA		FAM213A	rs7074356-A	0.1251	5E-6		1.5278	[1.35-1.71]	Illumina [10736316] (imputed)	N
1212	chr10	82194263	82194264	rs10887868	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		FAM213A	rs10887868-A	0.412	6E-14	(Redox-regulatory protein FAM213A, FAM213A.13423.94.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1212	chr10	82194329	82194330	rs7907770	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	10q23.1	NR	rs7907770-?		3E-9	(SFTPD)	0.2517	[NR] unit decrease	Illumina [NR]	N
1212	chr10	82195948	82195949	rs7096715	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.1	C10orf58	rs7096715-T	0.4086	2E-10		0.1723	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1212	chr10	82199262	82199263	rs7902460	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q23.1	FAM213A	rs7902460-T	0.426065	2E-12		0.0131133	[0.0095-0.0168] unit decrease	NR [13737936] (imputed)	N
1212	chr10	82199262	82199263	rs7902460	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q23.1		rs7902460-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1212	chr10	82199262	82199263	rs7902460	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q23.1		rs7902460-?	NR	4E-11		0.0150737	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
1212	chr10	82201302	82201303	rs7087356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	10q23.1		rs7087356-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1212	chr10	82206347	82206348	rs1870145	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	10q23.1	NR	rs1870145-A	NR	4E-7		0.01376	[0.0084-0.0191] unit increase	Illumina [541493]	N
1212	chr10	82208877	82208878	rs7075355	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q23.1	TSPAN14	rs7075355-A	0.533013	2E-8		0.014565	[0.0095-0.0196] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1212	chr10	82208877	82208878	rs7075355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q23.1		rs7075355-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1212	chr10	82209231	82209232	rs7095954	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q23.1	TSPAN14	rs7095954-A	0.4536	4E-12		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1212	chr10	82209231	82209232	rs7095954	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q23.1	TSPAN14	rs7095954-A	0.468	1E-11		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1212	chr10	82214585	82214586	rs7098414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs7098414-A	0.25	3E-6		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82215287	82215288	rs10887914	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q23.1	TSPAN14	rs10887914-T	0.4644	1E-14		0.1327	[0.099-0.166] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1212	chr10	82218105	82218106	rs1902661	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10q23.1	TSPAN14	rs1902661-G	0.39	4E-8	(conditional on rs721917)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1212	chr10	82218963	82218964	rs12220642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.1		rs12220642-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1212	chr10	82220596	82220597	rs7086627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs7086627-T	0.759	8E-7		0.052	NR unit increase	Illumina [NR] (imputed)	N
1212	chr10	82222177	82222178	rs7100689	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	10q23.1		rs7100689-?	NR	7E-8		0.045	NR unit increase	NR [5890016] (imputed)	N
1212	chr10	82222177	82222178	rs7100689	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs7100689-A	0.77	4E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1212	chr10	82222697	82222698	rs1993484	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q23.1	NR	rs1993484-T	0.234592	2E-9		0.050171312	[0.034-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1212	chr10	82222697	82222698	rs1993484	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q23.1	TSPAN14	rs1993484-T	0.2388	1E-8		0.0378	[0.025-0.051] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1212	chr10	82222697	82222698	rs1993484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs1993484-T	0.228	6E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82228186	82228187	rs2343305	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (young age of onset interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	10q23.1	TSPAN14	rs2343305-A	NR	4E-7				Illumina [NR]	N
1212	chr10	82230145	82230146	rs2343306	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs2343306-T	0.775	2E-6		0.053	NR unit increase	Illumina [NR] (imputed)	N
1212	chr10	82233224	82233225	rs10788639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10q23.1		rs10788639-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1212	chr10	82241929	82241930	rs7088704	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q23.1	TSPAN14	rs7088704-?	NR	3E-6		0.0257943	[0.015-0.037] unit decrease	Illumina [4804024] (imputed)	N
1212	chr10	82244956	82244956	rs58641111	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	10q23.1		rs58641111-CGT	0.47	2E-7		0.0468	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1212	chr10	82246748	82246749	rs1870140	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	10q23.1	TSPAN14	rs1870140-G	0.845758304007167	4E-8		0.049793966	[0.032-0.068] unit decrease	Affymetrix [35186738] (imputed)	N
1212	chr10	82246748	82246749	rs1870140	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	10q23.1	NR	rs1870140-G		3E-9		0.12	[0.081-0.159] unit increase	NR [NR]	N
1212	chr10	82249751	82249752	rs10749609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.1	NR	rs10749609-A	0.807023	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
1212	chr10	82249751	82249752	rs10749609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.1	NR	rs10749609-A	0.802686	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1212	chr10	82249751	82249752	rs10749609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q23.1	NR	rs10749609-A	0.793831	5E-11		0.015586	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1212	chr10	82249751	82249752	rs10749609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.1	NR	rs10749609-A	0.803517	4E-17				Affymetrix, Illumina [23467995] (imputed)	N
1212	chr10	82250830	82250831	rs7097656	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q23.1	TSPAN14	rs7097656-?	NR	1E-13	(subset analysis)			Illumina [130052]	N
1212	chr10	82250830	82250831	rs7097656	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q23.1	NR	rs7097656-G	0.8	1E-15	(EA)	1.1044418		Affymetrix, Illumina [~ 9000000] (imputed)	N
1212	chr10	82250830	82250831	rs7097656	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q23.1	NR	rs7097656-G	0.8	4E-18	(EA)	1.1411755	[1.11-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1212	chr10	82251513	82251514	rs17680741	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q23.1	TSPAN14	rs17680741-T	0.721477	1E-7		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1212	chr10	82251513	82251514	rs17680741	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q23.1	TSPAN14	rs17680741-T	0.7152	2E-11		0.042	[0.03-0.054] unit increase	Affymetrix [at least 7947838] (imputed)	N
1212	chr10	82251513	82251514	rs17680741	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q23.1	TSPAN14	rs17680741-T	0.715	2E-11		0.047	[0.033-0.061] unit increase	Affymetrix [7947838] (imputed)	N
1212	chr10	82251768	82251769	rs7910643	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs7910643-A	0.812	5E-6		0.054	NR unit increase	Illumina [NR] (imputed)	N
1212	chr10	82253983	82253984	rs6586028	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs6586028-T	0.81	4E-6		0.055	NR unit increase	Illumina [NR] (imputed)	N
1212	chr10	82254046	82254047	rs6586030	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q23.1	TSPAN14, SH2D4B	rs6586030-?		5E-8				Illumina [9725440] (imputed)	N
1212	chr10	82254046	82254047	rs6586030	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q23.1	TSPAN14, SH2D4B	rs6586030-?		7E-8				Illumina [9560910] (imputed)	N
1212	chr10	82254046	82254047	rs6586030	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q23.1	TSPAN14, C10orf58	rs6586030-G	0.847	9E-16		1.115	[1.076-1.156]	Affymetrix, Illumina [1230000] (imputed)	N
1212	chr10	82265270	82265271	rs9633740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	TSPAN14	rs9633740-A	0.187	2E-6		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82267944	82267945	rs2343551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q23.1	NR	rs2343551-C	0.795382	1E-18		0.020991	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1212	chr10	82271340	82271341	rs1870148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q23.1	TSPAN14	rs1870148-G	0.211005	4E-13		0.019901546	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1212	chr10	82273078	82273079	rs10748526	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	10q23.1	TSPAN14	rs10748526-?	NR	4E-6			NR	Affymetrix [2067592] (imputed)	N
1212	chr10	82277340	82277341	rs12264252	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q23.1	TSPAN14	rs12264252-A	0.2276	2E-10		0.0435	[0.03-0.057] unit decrease	NR [8041861] (imputed)	N
1212	chr10	82279926	82279927	rs873259	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	10q23.1	TSPAN14	rs873259-T	0.434	8E-6	(adjusted for sex and age)	0.433	[0.24-0.62] unit increase	Illumina [622468]	N
1212	chr10	82280136	82280137	rs1878036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.1	TSPAN14	rs1878036-G	0.794378	3E-13		0.019973643	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1212	chr10	82280136	82280137	rs1878036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q23.1	TSPAN14	rs1878036-G	0.794351	4E-11		0.01810029	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1212	chr10	82280136	82280137	rs1878036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q23.1	NR	rs1878036-G	0.795005	1E-17		0.01956	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1212	chr10	82287526	82287527	rs12261331	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	Intergenic	rs12261331-T	0.149	4E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82301535	82301536	rs11185951	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	SH2D4B	rs11185951-C	0.146	1E-6		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82304161	82304162	rs7097610	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	SH2D4B	rs7097610-T	0.181	5E-6		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1212	chr10	82304296	82304297	rs7084416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.1	SH2D4B	rs7084416-A	0.193	3E-6		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1213	chr10	82317157	82317158	rs12267227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q23.1	SH2D4B	rs12267227-C	0.29598	8E-11		0.016151663	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1213	chr10	82368220	82368221	rs17693104	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	10q23.1	SH2D4B	rs17693104-?	NR	8E-7		1.65		Illumina [636555]	N
1213	chr10	82377589	82377590	rs6586111	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	10q23.1	SH2D4B	rs6586111-?	NR	7E-6				NR [~ 2000000]	N
1213	chr10	82388982	82388983	rs59616746	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	10q23.1	SH2D4B	rs59616746-C	0.85	1E-6		1.2987013	[1.18-1.45]	NR [NR]	N
1213	chr10	82399394	82399395	rs116924979	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	10q23.1	NR	rs116924979-T	0.01628	5E-6		0.5424	[0.31-0.77] unit decrease	Illumina [10677593] (imputed)	N
1213	chr10	82409616	82409617	rs12784122	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	10q23.1	SH2D4B	rs12784122-A	2.29	8E-11	(recessive)	2.35	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1213	chr10	82413422	82413423	rs74477043	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10q23.1		rs74477043-?	NR	7E-6	(overall)	1.51		Illumina [11595112] (imputed)	N
1213	chr10	82431412	82431413	rs12255425	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	10q23.1		rs12255425-A	0.48	7E-6		0.47	unit increase	Affymetrix [NR] (imputed)	N
1214	chr10	82456680	82456681	rs11186609	30053915	Scepanovic P	2018-07-27	Genome Med	Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines.	IgA levels	1000 Metropolitan French ancestry individuals	NA	10q23.1	SH2D4B	rs11186609-C	NR	2E-8		0.07	[NR] unit decrease	Illumina [5699237] (imputed)	N
1214	chr10	82517465	82517466	rs17107657	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs17107657-?	NR	7E-6				Affymetrix [NR]	N
1214	chr10	82568683	82568684	rs10882097	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	10q23.1	LOC642666	rs10882097-?	NR	2E-6		1.228	[0.74-1.71] unit decrease	Illumina [498648]	N
1215	chr10	82699490	82699491	rs1484170	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q23.1	NRG3	rs1484170-?	NR	1E-6	(additive)			Affymetrix [361034]	N
1215	chr10	82699804	82699805	rs74552305	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q23.1		rs74552305-G	NR	6E-6		2.988	[1.73-4.25] unit increase	Illumina [NR] (imputed)	N
1216	chr10	82815673	82815674	rs1414909	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q23.1	NR	rs1414909-A	0.372	5E-10		0.00691595	[0.0047-0.0091] unit increase	NR [9732723] (imputed)	N
1217	chr10	82887881	82887882	rs11591827	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	10q23.1	SH2D4B	rs11591827-A	NR	9E-7				NR [NR] (imputed)	N
1217	chr10	82952915	82952916	rs185496277	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q23.1	NR	rs185496277-?	NR	1E-6		0.842485	[0.5-1.18] unit increase	NR [13958389] (imputed)	N
1218	chr10	83013778	83013779	rs10786317	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	NRG3	rs10786317-?	NR	5E-6	(betaine)	0.15800351	[0.09-0.226] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1218	chr10	83021932	83021933	rs10882871	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	10q23.1	RPA2P2	rs10882871-?		2E-7				NR [7405822] (imputed)	N
1218	chr10	83048036	83048037	rs11812485	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	10q23.1	Intergenic	rs11812485-?		8E-6		1.6273394	[NR]	Affymetrix [492217] (imputed)	N
1218	chr10	83068869	83068870	rs6583957	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	10q23.1		rs6583957-C	NR	6E-6	(daytime resting, weekdays)	0.5379	[0.3-0.77] unit increase	Affymetrix [7141204] (imputed)	N
1218	chr10	83095231	83095232	rs11189443	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	SH2D4B	rs11189443-?	NR	7E-6	(LPE 22:6)	0.24432877	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1218	chr10	83095231	83095232	rs11189443	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	SH2D4B	rs11189443-?	NR	7E-6	(LPC 18:1)	0.2460499	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1219	chr10	83153245	83153246	rs588517	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	10q23.1	intergenic	rs588517-A	0.15	8E-6	(internal cIMT)			Illumina [311194]	N
1219	chr10	83160853	83160854	rs4933772	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	10q23.1	NR	rs4933772-?		4E-7		0.003	[0.002-0.004] unit increase	Illumina [7533529] (imputed)	N
1219	chr10	83162706	83162707	rs6584032	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q23.1		rs6584032-T	0.234	8E-11		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1219	chr10	83188952	83188953	rs1329201	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	10q23.1	NRG3	rs1329201-T	0.34	8E-6		0.22	[0.12-0.32] unit decrease	Illumina [2675979] (imputed)	N
1220	chr10	83291689	83291690	rs72809865	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (early and late stages) in type 1 diabetes	2,068 European ancestry cases, 495 cases, 1,903 European ancestry controls, 690 controls	68 European ancestry cases, 3,188 cases, 815 European ancestry controls, 3,907 controls	10q23.1	NRG3	rs72809865-T	0.16	7E-6		1.17	[1.09-1.26]	Illumina [NR] (imputed)	N
1222	chr10	83566685	83566686	rs9787485	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	10q23.1	LOC727960, NRG3	rs9787485-T	0.149	4E-8	(Carbohydrate)			Affymetrix [590000]	N
1222	chr10	83566685	83566686	rs9787485	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	10q23.1	LOC727960, NRG3	rs9787485-T	0.149	5E-8	(Carbohydrate)			Affymetrix [590000]	N
1223	chr10	83655729	83655730	rs7912575	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA		NRG3	rs7912575-G	0.01	3E-6		4.52	[NR]	Affymetrix [703012]	N
1223	chr10	83668324	83668325	rs12358815	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	10q23.1	NRG3	rs12358815-T	NR	4E-6	(CPZe)	0.2554	[NR] unit decrease	Illumina [1190033]	N
1223	chr10	83677485	83677486	rs10786764	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Basal metabolic rate	39 Korean ancestry low BMR individuals, 38 Korean ancestry high BMR individuals	NA		NRG3	rs10786764-C	0.46	8E-7				Affymetrix [at least 710315] (imputed)	N
1223	chr10	83709810	83709811	rs76340606	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q23.1	NR	rs76340606-A	0.0145	4E-6	(EA)	0.1643	[0.095-0.234] unit decrease	Illumina [~ 11800000] (imputed)	N
1223	chr10	83742694	83742695	rs7911681	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	10q23.1	NRG3	rs7911681-?	NR	4E-6				Illumina [2668805]	N
1224	chr10	83773213	83773214	rs2207778	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	10q23.1	NRG3	rs2207778-A	0.113	4E-6		0.034	[0.02-0.048] unit decrease	Illumina [621723]	N
1224	chr10	83819124	83819125	rs4933824	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	10q23.1	NRG3	rs4933824-T	NR	2E-6				Affymetrix [339272]	N
1224	chr10	83872548	83872549	rs17559044	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs17559044-?	NR	9E-14				Affymetrix [NR]	N
1224	chr10	83876019	83876020	rs11192578	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	10q23.1	NR	rs11192578-C	0.127	2E-6		0.56	[0.32-0.8] unit increase	Illumina [9469131] (imputed)	N
1225	chr10	83969120	83969121	rs1649936	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	10q23.1	NRG3	rs1649936-T	NR	2E-24		0.06402	[0.03777-0.1085]	Illumina [484621]	N
1226	chr10	84033985	84033986	rs7096123	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q23.1	NR	rs7096123-G	0.315	2E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1226	chr10	84069401	84069402	rs7903018	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	10q23.1	NRG3	rs7903018-A	0.346809	2E-6		0.758916	[0.45-1.07] unit increase	NR [7263501] (imputed)	N
1228	chr10	84383107	84383108	rs1481123	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q23.1	NR	rs1481123-C	0.116	4E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1228	chr10	84385051	84385052	rs594418	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	10q23.1	NRG3	rs594418-?	NR	7E-7	(EA)			NR [at least 880000]	N
1229	chr10	84419409	84419410	rs2219937	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q23.1	NR	rs2219937-G	0.984667459331848	4E-6	(IGP24)	0.7496	[0.43-1.07] unit increase	Illumina [~ 2500000] (imputed)	N
1230	chr10	84623585	84623586	rs505826	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q23.1	Intergenic	rs505826-?		4E-6		31.1	[17.97-44.23] unit increase	Illumina [~ 10000000] (imputed)	N
1230	chr10	84624446	84624447	rs1333220	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q23.1	NRG3	rs1333220-C	0.029250565280101	4E-8	(G_Lactococcus_HB)	0.991473	[0.64-1.35] unit increase	Illumina [7711310] (imputed)	N
1230	chr10	84638402	84638403	rs548678068	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	10q23.1	NRG3	rs548678068-A	0.992	4E-6		0.8153	[0.47-1.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1231	chr10	84722618	84722619	rs11814950	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	10q23.1	NRG3	rs11814950-?	NR	2E-12		1.1627907	[1.11-1.21]	Illumina [13729857] (imputed)	N
1232	chr10	84832624	84832625	rs557953403	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	10q23.1	RNU6-478P	rs557953403-T	0.9983	2E-6		1.1324	[0.67-1.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1232	chr10	84870075	84870076	rs7915137	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.1	NRG3	rs7915137-G	0.333	7E-6	(Methionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1233	chr10	84940657	84940658	rs112046738	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q23.1	intergenic	rs112046738-C	0.0298245818609105	6E-8	(G_Lactococcus_HB)	0.999003	[0.64-1.36] unit increase	Illumina [7711310] (imputed)	N
1233	chr10	84949894	84949895	rs190780914	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q23.1	Intergenic	rs190780914-T	NR	5E-8	(between families)	5.452	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1233	chr10	84949919	84949920	rs116045734	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.1	NR	rs116045734-T	0.01045	2E-8	(AGT)	0.0942	NR unit increase	Illumina [1671387] (imputed)	N
1233	chr10	84980079	84980080	rs11197818	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q23.1	NR	rs11197818-?		1E-7				Illumina [4322238] (imputed)	N
1234	chr10	85067574	85067575	rs111785944	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	10q23.1		rs111785944-?	NR	2E-6		0.35	[0.2-0.5] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1234	chr10	85105608	85105609	rs7914606	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	10q23.1	NR	rs7914606-T	0.9392	4E-6	(Trans/cis-18:2, EA)	0.0077	[0.0044-0.011] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1234	chr10	85120681	85120682	rs7394339	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	10q23.1	MARK2P15, HMGN2P8	rs7394339-G	NR	9E-6		0.6012	unit decrease	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1235	chr10	85198919	85198920	rs11198698	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q23.1	NR	rs11198698-?	NR	1E-6		0.226743	[0.13-0.32] unit decrease	NR [13958389] (imputed)	N
1235	chr10	85244600	85244601	rs945554	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	GHITM	rs945554-?	NR	4E-6	(3-methyladipate; pimelate)	0.20115402	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1235	chr10	85253680	85253681	rs1414874	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	10q23.1	intergenic	rs1414874-A	0.0573	9E-6		0.1121	[0.063-0.161] unit increase	Illumina [2400000] (imputed)	N
1235	chr10	85316257	85316258	rs656127	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		10q23.1	NR	rs656127-C	0.7966489999999999	8E-6		1.0850954	[1.12-1.09]	Affymetrix [16499239] (imputed)	N
1236	chr10	85422853	85422854	rs2224865	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	10q23.1	NR	rs2224865-G	0.31	9E-6		1.44	[1.15-1.79]	Illumina [~ 550000]	N
1236	chr10	85453919	85453920	rs12413935	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q23.1	intergenic	rs12413935-?	NR	4E-11	(X-06226)	0.05911	[NR] unit decrease	Affymetrix [655658]	N
1237	chr10	85522190	85522191	rs66834924	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q23.1	NR	rs66834924-?		5E-6				Illumina [4322238] (imputed)	N
1237	chr10	85566842	85566843	rs11200661	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs11200661-?	NR	6E-8				Affymetrix [NR]	N
1238	chr10	85644614	85644615	rs10788289	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	10q23.1	GHITM, NRG3	rs10788289-?	0.04713	3E-10		4.271	[3.79-4.75]	Affymetrix [547296]	N
1238	chr10	85644614	85644615	rs10788289	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	10q23.1	GHITM, NRG3	rs10788289-?	0.04713	4E-9		3.556	[2.279-5.549]	Affymetrix [547296]	N
1238	chr10	85682626	85682627	rs61866256	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10q23.1	ENSG00000233258	rs61866256-?	NR	6E-7				Affymetrix, Illumina [15642250] (imputed)	N
1238	chr10	85685083	85685084	rs11200733	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10q23.1	GHITM	rs11200733-A	NR	2E-8		0.5644111	[0.37-0.76] unit decrease	Illumina [> 6200000] (imputed)	N
1239	chr10	85778374	85778375	rs11200804	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	10q23.1	NR	rs11200804-G	0.1573	2E-6		0.1899	[0.11-0.27] unit increase	Illumina [7305641] (imputed)	N
1239	chr10	85790475	85790476	rs10788309	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	10q23.1	NR	rs10788309-G	0.4384	4E-6		0.1001	[0.057-0.143] unit increase	Illumina [up to 1980188] (imputed)	N
1239	chr10	85802637	85802638	rs6585802	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	10q23.1		rs6585802-?	NR	5E-6		0.04	[0.022-0.058] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr10	85862566	85862567	rs12358373	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	C10orf99	rs12358373-?	NR	3E-6	(malate)	0.23978762	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1240	chr10	85889504	85889505	rs4400739	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.1	C10orf99	rs4400739-?	NR	6E-6	(fum; mal; alpha keto)	0.18177032	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1240	chr10	85960148	85960149	rs10788333	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q23.1	NR	rs10788333-?	NR	3E-8		0.150449	[0.097-0.204] unit decrease	NR [13958389] (imputed)	N
1240	chr10	85974380	85974381	rs3814212	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q23.1	NR	rs3814212-G		3E-13		0.08	[0.06-0.1] unit increase	NR [NR]	N
1240	chr10	85981800	85981801	rs6585847	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q23.1		rs6585847-G	0.47086	8E-8		0.036491	[0.023-0.05] unit increase	Affymetrix [15580782] (imputed)	N
1240	chr10	85981841	85981842	rs12217769	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q23.1	LRIT2	rs12217769-?	NR	2E-8		0.433	[0.27-0.59] unit decrease	Affymetrix [11100000] (imputed)	N
1241	chr10	85986553	85986554	rs745480	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q23.1	LRIT2, LRIT1	rs745480-C	0.5109	9E-17		8.314	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1241	chr10	86004237	86004238	rs10736319	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	10q23.1	NR	rs10736319-?	NR	7E-7		0.0879245	[0.053-0.123] unit decrease	NR [13958389] (imputed)	N
1241	chr10	86015572	86015573	rs10887265	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q23.1	NR	rs10887265-C	0.3235	2E-13		0.0568	[0.042-0.072] unit decrease	Illumina [~ 10600000] (imputed)	N
1241	chr10	86015572	86015573	rs10887265	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	10q23.1	RGR	rs10887265-?	NR	6E-19		1.0741138	[1.06-1.09]	Illumina [13762925] (imputed)	N
1241	chr10	86021023	86021024	rs4517452	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q23.1	NR	rs4517452-T		7E-27		0.13	[0.11-0.15] unit increase	NR [NR]	N
1241	chr10	86021023	86021024	rs4517452	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q23.1	GHITM, CDHR1, LRIT2, LRIT1, RGR, CCSER2	rs4517452-?		1E-70				Affymetrix, Illumina [NR] (imputed)	N
1241	chr10	86021023	86021024	rs4517452	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	10q23.1	RGR	rs4517452-?	0.362	4E-11		1.2108135	[1.14-1.28]	Affymetrix [NR] (imputed)	N
1241	chr10	86073658	86073659	rs4934001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q23.1		rs4934001-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1241	chr10	86079188	86079189	rs35806161	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	10q23.1	NR	rs35806161-?	NR	9E-6		0.038168	[0.021-0.055] unit increase	Affymetrix [9658292] (imputed)	N
1243	chr10	86262122	86262123	rs377277566	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q23.1	NR	rs377277566-?	NR	2E-6		0.215498	[0.13-0.3] unit increase	NR [13958389] (imputed)	N
1243	chr10	86329349	86329350	rs150795097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10q23.1	RPS3AP5	rs150795097-T	0.002	4E-6		0.471	[0.27-0.67] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1243	chr10	86348121	86348122	rs117302061	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10q23.1	RPS3AP5	rs117302061-G	NR	1E-8		1.15793	[0.77-1.55] unit increase	Illumina [NR] (imputed)	N
1243	chr10	86358505	86358506	rs2488636	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	10q23.1		rs2488636-G	NR	1E-6		1.52	[1.29-1.8]	Illumina [7488175] (imputed)	N
1243	chr10	86359276	86359277	rs2488637	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	10q23.1	NR	rs2488637-T	0.421	3E-6		0.35	[0.21-0.49] unit decrease	Illumina [9469131] (imputed)	N
1243	chr10	86359276	86359277	rs2488637	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	10q23.1	NR	rs2488637-T	0.42082	1E-7		0.08783225	[0.055-0.12] unit decrease	Illumina [9469131] (imputed)	N
1243	chr10	86363638	86363639	rs2488647	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	10q23.1	NR	rs2488647-C	0.0	3E-6		1.0638298	[-0.97457-3.10223]	Affymetrix [at least 143006] (imputed)	N
1244	chr10	86411553	86411554	rs113544501	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	10q23.1	CCSER2, LOC101929624	rs113544501-T	0.15	3E-6		1.37		Illumina [8974355] (imputed)	N
1244	chr10	86414446	86414447	rs77188389	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.1	NR	rs77188389-G	0.01045	1E-8	(F2)	0.04489	NR unit increase	Illumina [1671387] (imputed)	N
1244	chr10	86491780	86491781	rs11498973	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	10q23.1	intergenic	rs11498973-C	0.14	3E-6		1.27	[1.17-1.37]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1244	chr10	86491780	86491781	rs11498973	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	10q23.1	intergenic	rs11498973-C	0.14	1E-6		1.34	[1.22-1.46]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1245	chr10	86585839	86585840	rs2498010	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		10q23.1	NR	rs2498010-A	0.372037	6E-6		1.1248593	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1245	chr10	86588901	86588902	rs11201253	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.1	RPS3AP5	rs11201253-A	0.162	6E-6	(TSH )	0.02	[NR] uIU/mL increase	Illumina [899892]	N
1245	chr10	86618029	86618030	rs12260427	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	10q23.1	CCSER2, LINC01519	rs12260427-T	0.036	5E-6		0.065	[0.038-0.092] unit increase	Illumina [7358575] (imputed)	N
1246	chr10	86687395	86687396	rs61867882	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.1	NR	rs61867882-T	0.01568	4E-10	(CALD1)	0.09802	NR unit increase	Illumina [1671387] (imputed)	N
1246	chr10	86721180	86721181	rs12266096	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	10q23.1	NR	rs12266096-?		6E-6	(AA)			Illumina [up to 524000]	N
1247	chr10	86778198	86778199	rs11201335	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	10q23.1	NR	rs11201335-?	NR	8E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.3	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1247	chr10	86801184	86801185	rs12571637	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	10q23.1	FAM190B, LOC100507470	rs12571637-?	NR	7E-6	(adjusted for dose, GFR & AST)	1.59	unit decrease (EA)	Illumina [610255]	N
1247	chr10	86883397	86883398	rs71487170	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	10q23.1	NR	rs71487170-?	NR	1E-6		0.0927	[0.055-0.13] unit increase	Illumina [~ 7800000] (imputed)	N
1248	chr10	86916146	86916147	rs184986150	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	10q23.1	NR	rs184986150-A	0.005	5E-6		3.4	[2.01-5.74]	Illumina [9327222] (imputed)	N
1248	chr10	86953326	86953327	rs12098564	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		10q23.1	GRID1	rs12098564-A	NR	4E-7		0.435	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1248	chr10	86984849	86984850	rs11201507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q23.1	Intergenic	rs11201507-T	0.6463	4E-11	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1248	chr10	86990365	86990366	rs143255889	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	228 African American ancestry cases, 2,480 African American ancestry controls	NA	10q23.1	LINC01519	rs143255889-C	0.07	2E-6		3.1	[1.95-4.92]	Affymetrix, Illumina [NR] (imputed)	N
1248	chr10	87023580	87023581	rs10509516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q23.1		rs10509516-T	0.8045	3E-12	(conditional-joint)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1249	chr10	87039250	87039251	rs7910403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q23.1		rs7910403-T	0.1952	5E-12		0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1249	chr10	87081992	87081993	rs6585943	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	10q23.1	intergenic	rs6585943-A	0.394	8E-16		0.19	[0.15-0.24] unit decrease	Affymetrix [339439]	N
1249	chr10	87082299	87082300	rs79318201	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (sialyl-lacto-N-tetraose c) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10q23.1		rs79318201-?	NR	5E-9				Illumina [1128286]	N
1249	chr10	87093000	87093001	rs2642611	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10q23.1	Intergenic	rs2642611-?	NR	6E-6		1.791	[NR]	Affymetrix [492217] (imputed)	N
1249	chr10	87112166	87112167	rs61868084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q23.1		rs61868084-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1249	chr10	87122125	87122126	rs7920589	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q23.1	NR	rs7920589-C	0.181909	2E-9		0.05447814	[0.037-0.072] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1249	chr10	87146018	87146019	rs149731223	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	10q23.1	NR	rs149731223-?	NR	8E-6		0.2953	[0.17-0.43] unit increase	Illumina [at least 560000] (imputed)	N
1249	chr10	87154537	87154538	rs7917878	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	10q23.1	NR	rs7917878-T	0.1057	2E-6		0.2358	[0.14-0.33] unit increase	Illumina [10677593] (imputed)	N
1250	chr10	87203375	87203376	rs1912323	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	10q23.1		rs1912323-A	0.340783	7E-6		0.00875767	[0.0034-0.0141] unit decrease	Illumina [7666802] (imputed)	N
1250	chr10	87211116	87211117	rs7081147	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	10q23.1	Intergenic	rs7081147-C		6E-6		0.03	[0.017-0.042] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1251	chr10	87318887	87318888	rs1912286	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10q23.1	intergenic	rs1912286-?	NR	7E-10		0.0158809	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1251	chr10	87339121	87339122	rs34853150	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q23.1		rs34853150-G	0.842	2E-12		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1251	chr10	87357737	87357738	rs2175207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q23.1		rs2175207-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1251	chr10	87360722	87360723	rs2664404	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	10q23.1	GRID1-AS1	rs2664404-A	0.4298	8E-7		0.0076	[0.0047-0.0105] unit increase	Affymetrix [~ 7740000] (imputed)	N
1251	chr10	87365096	87365097	rs2280011	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q23.1	NR	rs2280011-G	0.236	4E-10		0.00792991	[0.0054-0.0104] unit increase	NR [9732723] (imputed)	N
1251	chr10	87367365	87367366	rs2616673	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs2616673-?	NR	2E-14				Affymetrix [NR]	N
1251	chr10	87367394	87367395	rs7907900	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	10q23.1	GRID1	rs7907900-?		2E-8				Affymetrix, Illumina [2374420] (imputed)	N
1251	chr10	87367394	87367395	rs7907900	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	10q23.1	GRID1	rs7907900-T	NR	6E-7				Affymetrix, Illumina [12061510] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q23.1	NA	rs7899106-A	0.9496	2E-18		0.0327	[0.025-0.04] unit decrease	NR [~ 27400000] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q23.1	NA	rs7899106-A	0.9496	2E-18		0.0327	[0.025-0.04] unit decrease	NR [~ 27400000] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q23.1	NR	rs7899106-A	NR	3E-11		0.039	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q23.1	GRID1	rs7899106-A	0.9366	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q23.1	GRID1	rs7899106-A	0.9366	3E-6		0.0337	[0.02-0.048] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q23.1	NR	rs7899106-A	0.946180015931271	3E-13		0.04524876	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1251	chr10	87410903	87410904	rs7899106	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q23.1	GRID1	rs7899106-G	0.057	1E-8		0.038	[0.025-0.051] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1251	chr10	87410903	87410904	rs7899106	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q23.1	GRID1	rs7899106-G	0.053	2E-6	(EA, women)	0.044	[0.026-0.062] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1251	chr10	87410903	87410904	rs7899106	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q23.1	GRID1	rs7899106-G	0.052	3E-8	(EA)	0.04	[0.026-0.053] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1251	chr10	87420813	87420814	rs35192567	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10q23.1		rs35192567-G	NR	2E-8		0.352	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1252	chr10	87447051	87447052	rs7081304	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs7081304-?	NR	3E-8				Affymetrix [NR]	N
1252	chr10	87457951	87457952	rs71503844	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10q23.1		rs71503844-T	NR	5E-9		0.546	[0.36-0.73] unit decrease	Affymetrix [509886] (imputed)	N
1252	chr10	87462955	87462956	rs4027581	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GRID1	rs4027581-?	NR	3E-9	(male)	1.23612	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1252	chr10	87465133	87465134	rs146127221	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q23.1	GRID1	rs146127221-T	0.0202	4E-8		0.042212132	[0.027-0.057] unit increase	Affymetrix [11514654] (imputed)	N
1252	chr10	87480438	87480439	rs4456206	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q23.1	GRID1	rs4456206-?		5E-6				Illumina [4322238] (imputed)	N
1252	chr10	87485416	87485417	rs10159528	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q23.1	NR	rs10159528-?	NR	8E-6	(AA)	0.3793	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1252	chr10	87490849	87490850	rs17399739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q23.1		rs17399739-G	NR	5E-11		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1252	chr10	87490849	87490850	rs17399739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q23.1		rs17399739-G	NR	1E-10		0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1252	chr10	87490849	87490850	rs17399739	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q23.1	GRID1	rs17399739-A	0.931102	4E-14		0.020955	[0.016-0.026] unit decrease	Affymetrix [12370749]	N
1252	chr10	87490849	87490850	rs17399739	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q23.1	GRID1	rs17399739-A	0.931102	6E-11		0.0177508	[0.012-0.023] unit decrease	Affymetrix [12370749]	N
1252	chr10	87490849	87490850	rs17399739	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q23.1	NR	rs17399739-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
1252	chr10	87490849	87490850	rs17399739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q23.1		rs17399739-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1252	chr10	87521967	87521968	rs1880381	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.1	NR	rs1880381-?	NR	6E-12				Affymetrix [NR]	N
1252	chr10	87534692	87534693	rs569475444	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	987 African American or Afro-Caribbean men	NA	10q23.1		rs569475444-C	0.024	9E-8		8.16	kg decrease	NR [638486]	N
1252	chr10	87534692	87534693	rs569475444	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	4878 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry men	NA	10q23.1		rs569475444-C	0.005	9E-9		8.09	kg decrease	NR [638486]	N
1253	chr10	87608459	87608460	rs7076096	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	10q23.1	GRIN1	rs7076096-?	NR	5E-6	(Trauma exposed controls; AA)			Illumina [up to 871502]	N
1253	chr10	87626428	87626429	rs78092837	30999091	Wang Y	2019-04-09	J Affect Disord	Post-traumatic stress following military deployment: Genetic associations and cross-disorder genetic correlations.	Post-traumatic stress disorder symptoms in trauma-exposed soldiers	462 Danish ancestry cases, 2,019 Danish ancestry controls	NA	10q23.1	GRID1	rs78092837-G	0.04	1E-6		2.4390244	NR	Illumina [NR] (imputed)	N
1253	chr10	87632794	87632795	rs7099032	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	10q23.1	GRID1	rs7099032-A	0.75	9E-6		1.3513513	[1.19-1.56]	Affymetrix [7515136] (imputed)	N
1253	chr10	87634923	87634924	rs1970525	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	10q23.1	GRID1, MI346, WAPAL	rs1970525-G	0.054	4E-6	(A. actino)	2.89	[1.85-4.52]	Affymetrix [~ 2500000] (imputed)	N
1253	chr10	87671030	87671031	rs11201829	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal overload gout	486 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	10q23.1	GRID1	rs11201829-G	0.015	2E-7		3.86	[2.33-6.38]	Illumina [7206774] (imputed)	N
1254	chr10	87694291	87694292	rs76765968	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	10q23.1	GRID1	rs76765968-T	0.856	2E-6		0.064	[0.037-0.091] unit decrease	Illumina [6150213] (imputed)	N
1254	chr10	87740752	87740753	rs10788473	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	10q23.1	GRID1	rs10788473-T	0.38	3E-6		1.27	[1.15-1.41]	Illumina [2731086] (imputed)	N
1254	chr10	87790079	87790080	rs2352179	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Hyperopia	361 European ancestry cases, 1,700 European ancestry controls	172 European ancestry cases, 690 European ancestry controls	10q23.1	NR	rs2352179-T	NR	2E-7		1.67	NR	Illumina [6470615] (imputed)	N
1255	chr10	87824517	87824518	rs72835205	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	10q23.1		rs72835205-?	NR	3E-6		0.18	[0.1-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1255	chr10	87839708	87839709	rs147116709	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	10q23.1	GRID1	rs147116709-A	0.013	5E-10		0.47	[0.31-0.63] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1255	chr10	87839708	87839709	rs147116709	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	10q23.1	GRID1	rs147116709-A	0.01	3E-8	(women)	0.58	[0.38-0.78] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1255	chr10	87846958	87846959	rs7910620	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	10q23.1	GRID1	rs7910620-G	0.01	7E-7	(LV wall thickness)	0.17	[0.11-0.23] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1255	chr10	87886385	87886386	rs55940619	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	10q23.2	NR	rs55940619-C	0.9228412	4E-6		1.150748	[1.09-1.21]	Affymetrix [7791636] (imputed)	N
1255	chr10	87931636	87931637	rs12243396	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	10q23.2	NR	rs12243396-T		5E-6		0.7423	[0.42-1.06] unit increase	Illumina [12764477] (imputed)	N
1255	chr10	87943608	87943609	rs6585998	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	10q23.2	MIR346	rs6585998-?		4E-6		5.642	[3.32-7.96] unit decrease	Illumina [~ 4900000] (imputed)	N
1255	chr10	87943608	87943609	rs6585998	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	10q23.2	MIR346	rs6585998-?		3E-6		2.107	[1.27-2.95] unit decrease	Illumina [~ 4900000] (imputed)	N
1256	chr10	87967079	87967080	rs11201942	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.2	NR	rs11201942-?	NR	4E-10				Affymetrix [NR]	N
1256	chr10	87993340	87993341	rs2814331	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Balding	6,357 Latin American individuals	NA	10q23.2	GRID1	rs2814331-?	NR	4E-9				Illumina [9143600] (imputed)	N
1256	chr10	88020582	88020583	rs4934173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.2		rs4934173-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1256	chr10	88028472	88028473	rs10788486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q23.2		rs10788486-T	NR	6E-9		0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1256	chr10	88030440	88030441	rs10887571	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q23.2	GRID1	rs10887571-C	0.552146	2E-8		0.00798055	[0.0052-0.0108] unit decrease	Affymetrix [12370749]	N
1256	chr10	88061438	88061439	rs572482355	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q23.2	GRID1	rs572482355-?	NR	4E-6		3.78		Illumina [6778521] (imputed)	N
1256	chr10	88065111	88065112	rs2353275	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	10q23.2	GRID1	rs2353275-?	NR	8E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1256	chr10	88065111	88065112	rs2353275	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	10q23.2	GRID1	rs2353275-?	NR	2E-7		0.194	[0.12-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1256	chr10	88065111	88065112	rs2353275	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	10q23.2	GRID1	rs2353275-?		5E-6		0.14	[0.079-0.201] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1257	chr10	88081437	88081438	rs77532868	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10q23.2		rs77532868-?	NR	1E-8		0.0259557	[0.017-0.035] unit increase	NR [6912294] (imputed)	N
1257	chr10	88081437	88081438	rs77532868	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	10q23.2		rs77532868-C	0.945958	3E-8		0.024	[0.016-0.032] unit increase	NR [7250403] (imputed)	N
1257	chr10	88096046	88096047	rs10887578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q23.2		rs10887578-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1257	chr10	88112322	88112323	rs10887584	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q23.2	NA	rs10887584-A	0.448	5E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1257	chr10	88112938	88112939	rs1863824	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q23.2	NR	rs1863824-G	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1257	chr10	88116478	88116479	rs7904985	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	10q23.2	NR	rs7904985-T	0.29	6E-6		1.17	[1.10-1.26]	Illumina [922031]	N
1257	chr10	88117317	88117318	rs11201992	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q23.2	NR	rs11201992-C	0.4767	6E-11		0.0251	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1257	chr10	88117692	88117693	rs112555777	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	10q23.2		rs112555777-T	NR	2E-6		0.8903	unit increase	Illumina [NR] (imputed)	N
1257	chr10	88124258	88124259	rs144876213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q23.2	Intergenic	rs144876213-T	0.0377	3E-8	(MTAG)	0.0242	[0.016-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1257	chr10	88124500	88124501	rs11201999	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q23.2	NR	rs11201999-C	0.5369	1E-8		0.0259	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1257	chr10	88138164	88138165	rs1008912	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	10q23.2		rs1008912-C	0.948	2E-8		0.117	[0.076-0.158] unit increase	Affymetrix [6030650] (imputed)	N
1257	chr10	88160593	88160594	rs34497506	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q23.2	NR	rs34497506-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1257	chr10	88162237	88162238	rs10458771	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	10q23.2	WAPAL	rs10458771-?		3E-6				Illumina [859311]	N
1257	chr10	88172708	88172709	rs2114820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q23.2		rs2114820-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1257	chr10	88194958	88194959	rs182554582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.2	Intergenic	rs182554582-A	0.999	8E-7	(AA)	0.433	unit increase	Illumina [NR] (imputed)	N
1257	chr10	88194958	88194959	rs182554582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.2	Intergenic	rs182554582-A	0.999	5E-7	(AA)	2.216	NR unit increase	Illumina [NR] (imputed)	N
1258	chr10	88216401	88216402	rs7075426	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q23.2	intergenic	rs7075426-A	0.47	6E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1258	chr10	88241915	88241916	rs61856694	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10q23.2		rs61856694-?	NR	3E-11				Illumina [1128286]	N
1258	chr10	88264014	88264015	rs3858281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q23.2	Intergenic	rs3858281-A	0.7363	7E-9	(MTAG)	0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1258	chr10	88264014	88264015	rs3858281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q23.2	Intergenic	rs3858281-G	0.2637	4E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1258	chr10	88315180	88315181	rs10887623	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	10q23.2	WAPL	rs10887623-G	0.1	3E-6		0.01977	[0.011-0.028] unit decrease	Illumina [541614]	N
1259	chr10	88372957	88372958	rs2803589	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	10q23.2	NR	rs2803589-G	0.1501	6E-6		0.0324028	NR unit decrease	Illumina [560351]	N
1259	chr10	88372957	88372958	rs2803589	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	10q23.2	NR	rs2803589-G	0.1501	2E-6		0.0742497	NR unit decrease	Illumina [560351]	N
1259	chr10	88415534	88415535	rs12257301	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q23.2	NR	rs12257301-?	NR	1E-6	(AA)	6.19	[5.31-7.07]	Illumina [905956]	N
1259	chr10	88427208	88427209	rs34346910	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma androstenedione levels in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	10q23.2	LDB3	rs34346910-C	0.111	6E-7		0.49	[0.3-0.68] pg/mL increase	Illumina [8203257] (imputed)	N
1259	chr10	88431291	88431292	rs184737911	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.2	LDB3	rs184737911-G	0.999	3E-6	(AA)	0.249	unit increase	Illumina [NR] (imputed)	N
1259	chr10	88431291	88431292	rs184737911	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.2	LDB3	rs184737911-G	0.999	9E-7	(AA)	1.323	NR unit increase	Illumina [NR] (imputed)	N
1259	chr10	88445740	88445741	rs3802662	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.2	LDB3	rs3802662-C	0.308988	4E-8	(-110 ms)	0.0324194	[0.02-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1259	chr10	88445740	88445741	rs3802662	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.2	LDB3	rs3802662-C	0.308988	4E-8	(-108 ms)	0.0335534	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1260	chr10	88480991	88480992	rs4934253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q23.2	LDB3	rs4934253-G	0.92441	2E-9		0.020921	[0.014-0.028] unit decrease	NR [13737936] (imputed)	N
1260	chr10	88509087	88509088	rs117443987	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q23.2	U3	rs117443987-T	0.92	6E-17		1.0	[0.76-1.24] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1260	chr10	88509087	88509088	rs117443987	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q23.2	U3	rs117443987-T	0.9148	1E-15		0.9744	[0.74-1.21] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1260	chr10	88511236	88511237	rs10887652	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q23.2	BMPR1A	rs10887652-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1260	chr10	88511302	88511303	rs11202154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q23.2		rs11202154-T	NR	2E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1260	chr10	88511302	88511303	rs11202154	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q23.2	BMPR1A	rs11202154-C	0.727181	2E-9		0.0133209	[0.009-0.0176] unit increase	Affymetrix [NR] (imputed)	N
1260	chr10	88511325	88511326	rs11202156	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q23.2	BMPR1A	rs11202156-G	0.727174	3E-8		0.0119436	[0.0077-0.0161] unit increase	Affymetrix [NR] (imputed)	N
1260	chr10	88522407	88522408	rs11202168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q23.2		rs11202168-A	NR	3E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1260	chr10	88546905	88546906	rs7900751	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q23.2	NR	rs7900751-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1260	chr10	88578086	88578087	rs113917983	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BMPR1A	rs113917983-?	NR	2E-10	(male)	1.92324	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1260	chr10	88592945	88592946	rs3858286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q23.2	BMPR1A	rs3858286-A	NR	7E-9		0.0173476	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1260	chr10	88604568	88604569	rs147819275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q23.2		rs147819275-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1261	chr10	88666063	88666064	rs71473282	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in IDL meal response (OrNLSr)	4,292 individuals	NA	10q23.2		rs71473282-A	0.022752595	5E-8		0.397299	[0.25-0.54] unit decrease	Illumina [7701709] (imputed)	N
1261	chr10	88674629	88674630	rs117800588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.2		rs117800588-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1261	chr10	88685674	88685675	rs188512985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.2	BMPR1A	rs188512985-A	0.081883	7E-9		0.023436785	[0.015-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr10	88688422	88688422	rs34192637	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q23.2		rs34192637-?	NR	6E-13		0.0245356	[0.018-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1261	chr10	88690649	88690650	rs112669180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.2		rs112669180-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1261	chr10	88691556	88691557	rs77902272	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	10q23.2	NR	rs77902272-A	0.0121	2E-6		0.749	[0.44-1.06] unit decrease	Illumina [NR] (imputed)	N
1261	chr10	88719788	88719789	rs760113	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q23.2	NR	rs760113-G	0.239	3E-7	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
1262	chr10	88745259	88745260	rs11202287	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q23.2	NR	rs11202287-G	0.11	9E-6	(EA)	4.31	[3.6-5.02]	Illumina [905956]	N
1262	chr10	88774117	88774118	rs9421553	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q23.2	NR	rs9421553-?	NR	8E-6		4.47	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1262	chr10	88820591	88820592	rs17096421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	10q23.2		rs17096421-A	0.943602	1E-12		0.0628534	[0.046-0.08] unit decrease	NR [11722792] (imputed)	N
1262	chr10	88820591	88820592	rs17096421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	10q23.2		rs17096421-A	0.943602	8E-10		0.0539934	[0.037-0.071] unit decrease	NR [11722792] (imputed)	N
1262	chr10	88820591	88820592	rs17096421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	10q23.2		rs17096421-A	0.943586	2E-8		0.0513762	[0.034-0.069] unit increase	NR [11722792] (imputed)	N
1262	chr10	88836152	88836153	rs5786757	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	10q23.2	Intergenic	rs5786757-T	0.2586	3E-7	(Nasal height)	0.4317	[0.21-0.65] unit decrease	Illumina [34985077] (imputed)	N
1262	chr10	88843208	88843209	rs9420434	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	10q23.2	GLUD1, SHLD2	rs9420434-C	0.245	9E-11		1.54	[1.35-1.75]	Illumina [7206774] (imputed)	N
1262	chr10	88845189	88845190	rs11202328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q23.2		rs11202328-T	NR	2E-27		0.0254	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1262	chr10	88851698	88851699	rs9421581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.2	NR	rs9421581-C	0.249322	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1263	chr10	88866851	88866851	rs369194245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q23.2	FAM35A	rs369194245-CAAAAA	0.154034	9E-12		0.021045936	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1263	chr10	88879695	88879696	rs4934298	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q23.2	NR	rs4934298-?	NR	7E-6		4.493	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.2	FAM35A	rs9420446-T	0.151129	2E-9		0.018603647	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q23.2	FAM35A	rs9420446-T	0.3138	1E-20		0.0409	[0.032-0.05] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q23.2	FAM35A	rs9420446-T	0.1371	1E-11		0.038016	[0.027-0.049] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q23.2	NR	rs9420446-T	0.373	2E-14	(men)	0.0526	[0.039-0.066] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q23.2	NR	rs9420446-T	0.3333	5E-6	(women)	0.0285	[0.016-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1263	chr10	88880688	88880689	rs9420446	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q23.2	FAM35A	rs9420446-T	0.2679	1E-8		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1263	chr10	88901801	88901802	rs3129353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q23.2		rs3129353-A	NR	6E-11		0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1263	chr10	88908800	88908801	rs11202345	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q23.2	FAM35A	rs11202345-T	0.6909	1E-10	(East Asian)	0.0484	[0.034-0.063] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1263	chr10	88908911	88908912	rs11202346	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	10q23.2	FAM35A	rs11202346-T	0.225	4E-12	(Japanese)	0.035	[0.025-0.045] unit increase	Illumina [5864938] (imputed)	N
1263	chr10	88908911	88908912	rs11202346	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	10q23.2	FAM35A	rs11202346-?	NR	4E-11		0.03489	[0.025-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1263	chr10	88915106	88915107	rs3129500	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	10q23.2	SHLD2, FAM35A	rs3129500-G	0.358	4E-17		1.37	[1.28-1.48]	Illumina [7206774] (imputed)	N
1263	chr10	88919318	88919319	rs7903456	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	10q23.2	FAM35A	rs7903456-A	0.248	4E-8		1.34	[1.21-1.49]	Illumina [570442]	N
1263	chr10	88919318	88919319	rs7903456	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	10q23.2	FAM35A	rs7903456-A	0.248	6E-7	(Japanese)	1.26	[1.15-1.38]	Illumina [570442]	N
1263	chr10	88919318	88919319	rs7903456	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	10q23.2	FAM35A	rs7903456-?	NR	4E-8		1.23	NR	Illumina [570442]	N
1263	chr10	88925528	88925529	rs4933432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q23.2		rs4933432-A	NR	1E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1263	chr10	88925528	88925529	rs4933432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q23.2	FAM35A	rs4933432-A	0.848427	6E-12		0.021230597	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1263	chr10	88929651	88929652	rs4934311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q23.2	NR	rs4934311-A	0.848354	4E-15		0.021487	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1263	chr10	88929651	88929652	rs4934311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.2	NR	rs4934311-A	0.751389	2E-14				Affymetrix, Illumina [24653286] (imputed)	N
1263	chr10	88929651	88929652	rs4934311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.2	NR	rs4934311-A	0.746713	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
1263	chr10	88930248	88930249	rs11202365	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q23.2	FAM35A	rs11202365-T		3E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1263	chr10	88931736	88931737	rs11202366	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q23.2	NR	rs11202366-A	NR	2E-14		0.0189	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1263	chr10	88939961	88939962	rs7081609	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q23.2	NR	rs7081609-T	0.15	7E-19		0.0229	[0.018-0.028] unit decrease	NR [NR]	N
1263	chr10	88942569	88942570	rs3129430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q23.2	NR	rs3129430-A	0.848062	3E-15		0.021752	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1263	chr10	88949044	88949045	rs6586063	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	10q23.2	SHLD2, FAM35A	rs6586063-G	0.368	4E-11		1.49	[1.32-1.68]	Illumina [7206774] (imputed)	N
1263	chr10	88951661	88951662	rs3129399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q23.2	NR	rs3129399-G	0.847832	2E-14		0.021771	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1263	chr10	88953613	88953614	rs659107	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	10q23.2		rs659107-G	0.36	3E-9		0.036	increase	NR [7104359] (imputed)	N
1263	chr10	88953613	88953614	rs659107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	10q23.2		rs659107-G	0.361255	4E-12		0.0284416	[0.02-0.036] unit increase	Illumina [13475706] (imputed)	N
1263	chr10	88953881	88953882	rs11202381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	10q23.2		rs11202381-T	0.306161303	8E-10		0.10907273	[0.074-0.144] unit decrease	Illumina [13429980] (imputed)	N
1263	chr10	88954019	88954020	rs6586064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	10q23.2		rs6586064-A	NR	7E-11		0.0908	[0.064-0.118] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1263	chr10	88963037	88963038	rs10887704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.2		rs10887704-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1263	chr10	88966574	88966575	rs11202391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q23.2		rs11202391-A	NR	4E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1266	chr10	89263371	89263372	rs3758477	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	10q23.2	LINC00864, MINPP1	rs3758477-T	0.35	2E-6	(Metopion eminence depth)	0.058	[NR] unit increase	Affymetrix [311944]	N
1266	chr10	89297506	89297507	rs3847450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MINPP1	5,353 Icelandic ancestry individuals	NA	10q23.2		rs3847450-A	0.4455	7E-19		0.159457	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1266	chr10	89299708	89299709	rs11202439	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.2	MINPP1	rs11202439-G	0.54390625	1E-12	(MINPP1, 5586_66_3)	0.17762507	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1266	chr10	89332705	89332706	rs140682412	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.2	Intergenic	rs140682412-C	1.0	2E-6	(AA)	0.436	unit increase	Illumina [NR] (imputed)	N
1266	chr10	89334537	89334538	rs114901793	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	10q23.2	MINPP1	rs114901793-C	0.06851	3E-6				Illumina [4404269] (imputed)	N
1266	chr10	89338632	89338633	rs9664222	20304771	Newman AB	2010-03-18	J Gerontol A Biol Sci Med Sci	A meta-analysis of four genome-wide association studies of survival to age 90 years or older: the Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.	Longevity	1,836 European ancestry long-lived individuals, 1,955 European ancestry controls	2,594 European ancestry long-lived individuals, 3,431 European ancestry controls	10q23.2	MINPP1	rs9664222-C	0.79	7E-7		1.22	[NR]	Affymetrix, Illumina [2287520] (imputed)	N
1266	chr10	89340205	89340206	rs10749553	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	10q23.2	NR	rs10749553-?	NR	5E-7		70.6351	[43.73-97.55] unit decrease	Illumina [5432814] (imputed)	N
1266	chr10	89340205	89340206	rs10749553	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	10q23.2	NR	rs10749553-?	NR	2E-7		70.5629	[43.75-97.37] unit decrease	Illumina [5432814] (imputed)	N
1266	chr10	89379002	89379003	rs17700444	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL138767.3	rs17700444-?	NR	2E-9		1.9866	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1267	chr10	89398246	89398247	rs7911924	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q23.2	RP11-57C13.6, RP11-57C13.3	rs7911924-A	0.3082	7E-6		0.0282	[0.016-0.041] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1267	chr10	89412574	89412575	rs791888	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	10q23.2	NR	rs791888-T	NR	4E-7		0.0243	[NR] mg/dl increase	Illumina [up to 509150]	N
1267	chr10	89412574	89412575	rs791888	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	10q23.2	NR	rs791888-T	NR	2E-6	(EA)	0.02742	(0.01614-0.03871) mg/dl increase	Illumina [up to 509150]	N
1267	chr10	89415147	89415148	rs1969821	26685716	Chang X	2015-12-21	Sci Rep	Genome-wide association study reveals two loci for serum magnesium concentrations in European-American children.	Magnesium levels	2,267 European American children	257 European American children, 15,366 European ancestry adults	10q23.2	PAPSS2	rs1969821-A	NR	4E-7	(children)	0.03	[0.018-0.042] mg/dl increase	Illumina [at least 507409] (imputed)	N
1267	chr10	89418563	89418564	rs2281803	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q23.2	PAPSS2	rs2281803-C	0.418663	2E-11	(propyl 4-hydroxybenzoate sulfate)	0.152	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
1267	chr10	89418563	89418564	rs2281803	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10q23.2	PAPSS2	rs2281803-C	0.418663	2E-11	(propyl 4-hydroxybenzoate sulfate)	0.152	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
1267	chr10	89443309	89443310	rs10887741	19727025	De Moor MH	2009-09-02	Med Sci Sports Exerc	Genome-wide association study of exercise behavior in Dutch and American adults.	Leisure-time exercise behaviour	2,622 European ancestry individuals	NA	10q23.2	PAPSS2	rs10887741-T	NR	4E-6		1.32	[1.17-1.49]	Affymetrix, Perlegen [~ 1600000] (imputed)	N
1267	chr10	89455670	89455671	rs77822607	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q23.2	PAPSS2	rs77822607-A	0.0218135545145328	5E-6	(G_Gemmiger_HB)	1.05433	[0.6-1.51] unit decrease	Illumina [7711310] (imputed)	N
1267	chr10	89468952	89468953	rs17173698	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q23.31	PAPSS2	rs17173698-G	0.97455	4E-11		0.0391802	[0.028-0.051] unit decrease	NR [13737936] (imputed)	N
1267	chr10	89468952	89468953	rs17173698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q23.31		rs17173698-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1267	chr10	89468952	89468953	rs17173698	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q23.31		rs17173698-?	NR	4E-16		0.0574583	[0.044-0.07] unit decrease	Affymetrix [20259828] (imputed)	N
1267	chr10	89477108	89477109	rs7896505	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q23.31		rs7896505-?	NR	3E-16		0.0170634	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1267	chr10	89481870	89481871	rs10887745	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q23.31	PAPSS2	rs10887745-G	0.574714	1E-12		0.0134668	[0.0097-0.0172] unit increase	NR [13737936] (imputed)	N
1268	chr10	89555811	89555815	rs147048550	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q23.31	ATAD1	rs147048550-TGTAA	0.97512	4E-7	(men)	0.0854195	[0.053-0.118] unit decrease	NR [17166351] (imputed)	N
1268	chr10	89555811	89555815	rs147048550	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q23.31	ATAD1	rs147048550-TGTAA	0.975078	1E-10		0.0690115	[0.047-0.091] unit decrease	NR [17166351] (imputed)	N
1268	chr10	89594579	89594580	rs11202579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q23.31	ATAD1, CFL1P1	rs11202579-G	NR	1E-8		0.018403	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1268	chr10	89599748	89599749	rs17101804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.31		rs17101804-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1268	chr10	89603423	89603424	rs10887759	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q23.31	NR	rs10887759-A	0.16	8E-11		0.016	[0.011-0.021] unit increase	Affymetrix [2446094] (imputed)	N
1268	chr10	89603423	89603424	rs10887759	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q23.31	NR	rs10887759-A	0.16	5E-8				Affymetrix [2446094] (imputed)	N
1268	chr10	89603423	89603424	rs10887759	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q23.31	NR	rs10887759-A	0.1595	1E-12		0.0173	[0.013-0.022] unit increase	NR [~ 27400000] (imputed)	N
1268	chr10	89604731	89604732	rs10788569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q23.31		rs10788569-C	NR	3E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1268	chr10	89604731	89604732	rs10788569	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.31	CFL1P1	rs10788569-C	0.7503	1E-8		0.2282	[0.15-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
1268	chr10	89604731	89604732	rs10788569	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q23.31	NA	rs10788569-T	0.7235	4E-12		0.0134	[0.0097-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
1268	chr10	89604731	89604732	rs10788569	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q23.31	NR	rs10788569-T	0.7235	4E-12		0.0134	[0.0097-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
1268	chr10	89604731	89604732	rs10788569	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	10q23.31	chr10mb89	rs10788569-C	0.268499524	5E-6		0.1631	[0.093-0.233] unit increase	Affymetrix [~ 9800000] (imputed)	N
1268	chr10	89608778	89608779	rs11202585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q23.31		rs11202585-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1268	chr10	89614815	89614816	rs117472357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q23.31		rs117472357-T	NR	4E-8		0.0317	[0.02-0.043] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1268	chr10	89617156	89617157	rs11202589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q23.31		rs11202589-G	NR	3E-14		0.0538	[0.04-0.068] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1268	chr10	89631847	89631847	rs140079792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q23.31	PTEN	rs140079792-GT	0.0463750000000001	1E-10		0.03527525	[0.025-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1268	chr10	89638136	89638137	rs79812451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q23.31		rs79812451-A	NR	2E-12		0.0328	[0.024-0.042] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1268	chr10	89638136	89638137	rs79812451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10q23.31		rs79812451-A	NR	3E-16		0.0498	[0.038-0.062] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1268	chr10	89638951	89638958	rs200280754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q23.31		rs200280754-T	0.166903	2E-12		0.0326229	[0.024-0.042] unit increase	Illumina [13479091] (imputed)	N
1268	chr10	89638986	89638987	rs75260973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q23.31	NR	rs75260973-T	0.039645	8E-25		0.050702	[0.041-0.06] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1268	chr10	89639056	89639056	rs761659435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q23.31	NR	rs761659435-D	0.393389	8E-17		0.01725	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1268	chr10	89641221	89641222	rs11202594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q23.31	NR	rs11202594-G	0.842577	9E-9		0.00560119	[0.0034-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
1268	chr10	89641221	89641222	rs11202594	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q23.31	NR	rs11202594-G	0.842577	4E-8		0.00609021	[0.0036-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
1268	chr10	89644285	89644286	rs34417600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.31	PTEN	rs34417600-C	0.039538	3E-16		0.04629964	[0.035-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89653685	89653686	rs1903858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q23.31		rs1903858-G	NR	2E-14		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q23.31		rs3831732-CA	NR	4E-13		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q23.31	NR	rs3831732-CA	NR	3E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q23.31	PTEN	rs3831732-CA	0.393506	1E-14		0.0201664	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q23.31	PTEN	rs3831732-CA	0.393484	2E-14		0.017416602	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10q23.31	PTEN	rs3831732-CA	0.3947	1E-13		0.02735438	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1269	chr10	89655242	89655242	rs3831732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10q23.31	PTEN	rs3831732-CA	0.3946	2E-15		0.02921068	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1269	chr10	89656155	89656156	rs741804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	10q23.31		rs741804-C	0.187097	9E-17		0.0485971	[0.037-0.06] unit decrease	Illumina [13469940] (imputed)	N
1269	chr10	89656155	89656156	rs741804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	10q23.31	NR	rs741804-A	0.817082	2E-19		0.059725	[0.047-0.073] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1269	chr10	89656155	89656156	rs741804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs741804-C	0.061842	1E-16				Affymetrix, Illumina [19905671] (imputed)	N
1269	chr10	89656155	89656156	rs741804	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	10q23.31	PTEN	rs741804-?	NR	2E-10		0.04806	[0.033-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1269	chr10	89659152	89659153	rs1234216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q23.31	PTEN	rs1234216-A	NR	2E-9		0.0177447	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1269	chr10	89659152	89659153	rs1234216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q23.31	PTEN	rs1234216-A	NR	2E-9		0.0176656	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1269	chr10	89662919	89662936	rs200480363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q23.31	PTEN	rs200480363-C	0.037167	6E-12		0.0435986	[0.033-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89676310	89676310	rs745566843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q23.31	NR	rs745566843-D	0.393362	2E-46		0.030096	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1269	chr10	89677106	89677107	rs17106896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q23.31	PTEN	rs17106896-T	0.040865	8E-11		0.037221044	[0.026-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89680630	89680631	rs118164457	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	10q23.31	PTEN	rs118164457-T	0.957	4E-10		0.0345	[0.023-0.046] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q23.31		rs59085061-G	NR	1E-13		0.0443	[0.033-0.056] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.31	PTEN	rs59085061-G	0.039932	8E-20		0.051513307	[0.04-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q23.31	PTEN	rs59085061-G	0.039909	6E-9		0.03296613	[0.022-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q23.31	PTEN	rs59085061-G	0.039914	7E-21		0.053194653	[0.042-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q23.31	PTEN	rs59085061-G	0.039905	7E-12		0.039357204	[0.028-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q23.31	NR	rs59085061-G	0.040472	9E-27		0.050292	[0.041-0.059] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1269	chr10	89681457	89681458	rs59085061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.31		rs59085061-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1269	chr10	89681687	89681688	rs77413490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q23.31		rs77413490-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1269	chr10	89684213	89684214	rs1236816	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q23.31	PTEN	rs1236816-A	0.499	4E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1269	chr10	89686166	89686168	rs3831733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q23.31	PTEN	rs3831733-T	0.157043	3E-9		0.01838248	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89686166	89686168	rs3831733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q23.31	PTEN	rs3831733-T	0.157024	1E-11		0.020954967	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89686508	89686509	rs17107001	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	10q23.31	PTEN	rs17107001-?	NR	8E-6				Illumina [7401356] (imputed)	N
1269	chr10	89698189	89698190	rs1234214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q23.31		rs1234214-A	NR	7E-26		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1269	chr10	89698189	89698190	rs1234214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q23.31	PTEN	rs1234214-A	0.390567	5E-28		0.024976043	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89698189	89698190	rs1234214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q23.31	PTEN	rs1234214-A	0.390555	2E-30		0.026431125	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr10	89698189	89698190	rs1234214	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs1234214-A	0.395499	4E-43				Affymetrix, Illumina [19872809] (imputed)	N
1269	chr10	89698189	89698190	rs1234214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q23.31		rs1234214-?	NR	7E-37				NR [~ 8900000] (imputed)	N
1269	chr10	89699208	89699209	rs2673803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	10q23.31	PTEN	rs2673803-T	0.3499	5E-9		0.021904	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1269	chr10	89699208	89699209	rs2673803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10q23.31	PTEN	rs2673803-T	0.3499	2E-14		0.02850167	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1269	chr10	89699208	89699209	rs2673803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10q23.31	PTEN	rs2673803-T	0.35	7E-12		0.02569703	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1269	chr10	89699290	89699295	rs200861498	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q23.31		rs200861498-A	0.345219692	5E-8		1.0486423	[1.030918616-1.066670728]	Illumina [8919992] (imputed)	N
1269	chr10	89722261	89722262	rs61093223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs61093223-C	0.186194	8E-13				Affymetrix, Illumina [24588908] (imputed)	N
1269	chr10	89722261	89722262	rs61093223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q23.31	NR	rs61093223-C	0.167435	4E-12		0.018783	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1269	chr10	89722730	89722731	rs36062478	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	10q23.31	PTEN	rs36062478-T	0.89	2E-8		0.9383869	[NR]	Illumina [12493443] (imputed)	N
1269	chr10	89722730	89722731	rs36062478	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q23.31	NR	rs36062478-C	0.178	7E-13		0.0389	[0.028-0.049] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1269	chr10	89726744	89726745	rs701848	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10q23.31		rs701848-T	0.61	4E-14				Affymetrix [10369434] (imputed)	N
1269	chr10	89726744	89726745	rs701848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q23.31	PTEN	rs701848-C	0.390978	9E-28		0.025228966	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89731869	89731870	rs478839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs478839-G	0.399274	4E-16				Affymetrix, Illumina [24332387] (imputed)	N
1269	chr10	89731869	89731870	rs478839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q23.31	NR	rs478839-G	0.395013	6E-18		0.016544	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1269	chr10	89741805	89741806	rs809367	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10q23.31	NR	rs809367-?	NR	3E-6		0.00687	[0.004-0.0097] unit decrease	Affymetrix [9658292] (imputed)	N
1269	chr10	89745813	89745814	rs644205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q23.31		rs644205-A	NR	6E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1269	chr10	89745813	89745814	rs644205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q23.31		rs644205-A	NR	5E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1269	chr10	89745813	89745814	rs644205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.31		rs644205-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1269	chr10	89745813	89745814	rs644205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q23.31		rs644205-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1269	chr10	89752210	89752211	rs149784093	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q23.31	PTEN	rs149784093-T	0.01	3E-6	(Age 20-60 years)	0.2236	[0.13-0.32] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1269	chr10	89755600	89755601	rs10887768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q23.31	NR	rs10887768-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1269	chr10	89759307	89759308	rs559270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q23.31	SNORD74	rs559270-C	0.38223	2E-10		0.014937723	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr10	89765543	89765544	rs806685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs806685-A	0.386129	4E-20				Affymetrix, Illumina [24246363] (imputed)	N
1269	chr10	89765543	89765544	rs806685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q23.31	NR	rs806685-A	0.38414	4E-23		0.019233	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1269	chr10	89765944	89765945	rs10887773	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	10q23.31		rs10887773-T	0.17	5E-10		0.056	[0.038-0.074] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
1269	chr10	89768583	89768584	rs10788575	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q23.31	NR	rs10788575-G	0.8512	4E-8		0.0352	[0.023-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1269	chr10	89768583	89768584	rs10788575	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q23.31	PTEN	rs10788575-A		9E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
1269	chr10	89769339	89769340	rs11202627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q23.31		rs11202627-T	0.359412543	4E-9		0.056207903	[0.038-0.075] unit increase	Illumina [13429769] (imputed)	N
1269	chr10	89769339	89769340	rs11202627	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	10q23.31	PTEN	rs11202627-T	0.1518	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1269	chr10	89776958	89776959	rs114894790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs114894790-T	0.0315263	3E-24				Affymetrix, Illumina [24649327] (imputed)	N
1269	chr10	89776958	89776959	rs114894790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs114894790-T	0.0336518	1E-21				Affymetrix, Illumina [23114412] (imputed)	N
1269	chr10	89778306	89778306	rs35797279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q23.31		rs35797279-CT	NR	1E-15		0.0104	[0.0079-0.0129] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1269	chr10	89780149	89780150	rs1360950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.31		rs1360950-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1269	chr10	89782385	89782386	rs2785079	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q23.31	PTEN, RNLS	rs2785079-?	NR	1E-6		0.020800378	[0.012-0.029] unit increase	Illumina [27896057] (imputed)	N
1270	chr10	89787111	89787112	rs35243398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q23.31		rs35243398-C	NR	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1270	chr10	89787274	89787275	rs2049814	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.31	PTEN, RNLS	rs2049814-A		2E-9		0.153	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1270	chr10	89791653	89791654	rs572474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs572474-G	0.148129	6E-14				Affymetrix, Illumina [20825802] (imputed)	N
1270	chr10	89807130	89807131	rs2673826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	10q23.31		rs2673826-G	NR	3E-9		0.0511	[0.034-0.068] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1270	chr10	89807365	89807366	rs10887777	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q23.31	PTEN	rs10887777-T	0.739875	2E-11		0.00297497	[0.0021-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
1270	chr10	89807365	89807366	rs10887777	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q23.31	PTEN, RNLS	rs10887777-C	0.26	6E-9		5.81	z-score increase	Affymetrix [4312306] (imputed)	N
1270	chr10	89820169	89820170	rs4405216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q23.31		rs4405216-T	NR	2E-10		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1270	chr10	89823569	89823570	rs4934377	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q23.31	intergenic	rs4934377-A	0.7297	7E-16		0.0172	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1270	chr10	89824770	89824771	rs76959677	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	10q23.31	PTEN, KLLN, SNORD74	rs76959677-G	0.04	3E-8		1.28		Illumina, Perlegen [9113515] (imputed)	N
1270	chr10	89826992	89826993	rs1819575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q23.31		rs1819575-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1270	chr10	89827120	89827121	rs1819577	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q23.31	PTEN	rs1819577-A	NR	1E-7		1.0606704	NR	Affymetrix, Illumina [8278136] (imputed)	N
1270	chr10	89849518	89849519	rs4933466	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	10q23.31	PTEN, RNLS	rs4933466-G	0.397786544194698	1E-13		0.035	[0.026-0.044] SD decrease	Illumina [22400000] (imputed)	N
1270	chr10	89849518	89849519	rs4933466	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	10q23.31	PTEN	rs4933466-A	0.6	2E-10		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1270	chr10	89855607	89855608	rs7070980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs7070980-C	0.880723	2E-14				Affymetrix, Illumina [17210439] (imputed)	N
1270	chr10	89856871	89856872	rs76257861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q23.31		rs76257861-G	0.045361	3E-18		0.046882488	[0.036-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr10	89857816	89857817	rs11202654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q23.31		rs11202654-G	0.117052	5E-14		0.026248885	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr10	89857816	89857817	rs11202654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q23.31	NR	rs11202654-A	0.883475	7E-17		0.024925	[0.019-0.031] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1270	chr10	89862952	89862953	rs79252156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs79252156-A	0.0432017	4E-13				Affymetrix, Illumina [23467995] (imputed)	N
1270	chr10	89865333	89865334	rs56221718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q23.31		rs56221718-G	NR	1E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1270	chr10	89869469	89869470	rs75767433	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.31	NR	rs75767433-G	0.01394	3E-12	(EPHA6)	0.049	NR unit increase	Illumina [1671387] (imputed)	N
1270	chr10	89878333	89878334	rs74364334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q23.31		rs74364334-A	NR	8E-14		0.04	[0.029-0.051] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1270	chr10	89878333	89878334	rs74364334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q23.31		rs74364334-A	0.049966	4E-13		0.0374013	[0.027-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr10	89878333	89878334	rs74364334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q23.31	NR	rs74364334-A	0.049832	1E-15		0.034841	[0.026-0.043] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1271	chr10	89997494	89997495	rs7095034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q23.31		rs7095034-G	0.434135	8E-9		0.012910737	[0.0085-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1271	chr10	90013194	90013195	rs558443	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q23.31	RNLS, PTEN	rs558443-A	0.774588	2E-8		0.017453	[0.011-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1271	chr10	90023032	90023033	rs10509540	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	10q23.31	RNLS	rs10509540-?	NR	2E-9		0.05	NR L decrease	Affymetrix [9390170] (imputed)	N
1271	chr10	90023032	90023033	rs10509540	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	10q23.31	C10orf59	rs10509540-?	0.71	1E-28		1.33	[1.25-1.43]	Affymetrix, Illumina [841622] (imputed)	N
1271	chr10	90024598	90024599	rs166976	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	10q23.31		rs166976-A	NR	2E-10		0.0156	[0.011-0.02] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1271	chr10	90024598	90024599	rs166976	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	10q23.31		rs166976-A	0.73	4E-44		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1271	chr10	90024598	90024599	rs166976	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	10q23.31		rs166976-A	0.72	1E-10		0.018	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1271	chr10	90031902	90031903	rs17110523	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	10q23.31	NR	rs17110523-?	NR	3E-6		0.0963551	[0.056-0.137] unit increase	NR [13958389] (imputed)	N
1271	chr10	90035653	90035654	rs12416116	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	10q23.31	RNLS	rs12416116-?	0.3	7E-12		1.1927481		Illumina [252970]	N
1271	chr10	90035653	90035654	rs12416116	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	10q23.31	Intergenic	rs12416116-C	0.72	4E-15		1.1764705		Illumina [135870]	N
1271	chr10	90042153	90042154	rs3781196	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q23.31	RNLS	rs3781196-?		5E-32				Affymetrix, Illumina [NR] (imputed)	N
1272	chr10	90054898	90054899	rs11202704	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q23.31	NR	rs11202704-T	0.7262	1E-8		0.0454	[0.03-0.061] unit decrease	Illumina [~ 10600000] (imputed)	N
1272	chr10	90066623	90066624	rs10788590	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	10q23.31	RNLS	rs10788590-?		8E-7	(corrected for APOE4 status)	0.14	[NR] unit increase	Illumina [5137218] (imputed)	N
1272	chr10	90089524	90089525	rs11202717	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q23.31	NR	rs11202717-?	NR	6E-8		0.122075	[0.078-0.166] unit decrease	NR [13958389] (imputed)	N
1272	chr10	90091324	90091325	rs11202719	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q23.31	NR	rs11202719-G	0.355238	1E-20		0.0301701	[0.024-0.037] unit increase	NR [19129689] (imputed)	N
1272	chr10	90091539	90091540	rs1426619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q23.31		rs1426619-T	0.4346	1E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1272	chr10	90091539	90091540	rs1426619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q23.31	Intergenic	rs1426619-T	0.4346	1E-10	(MTAG)	0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1272	chr10	90095914	90095915	rs17424286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q23.31		rs17424286-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1272	chr10	90100150	90100151	rs117634027	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	10q23.31	RNLS	rs117634027-T	0.006	1E-7		6.04	[3.11-11.76]	Illumina [8672852] (imputed)	N
1272	chr10	90142202	90142203	rs11202736	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q23.31	RNLS	rs11202736-A	0.7168	5E-12		6.919	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1272	chr10	90150836	90150837	rs796945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.31		rs796945-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1273	chr10	90187923	90187924	rs10788599	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	10q23.31	RNLS	rs10788599-?	0.83	1E-6		1.4492754		Illumina [114874]	N
1273	chr10	90191199	90191200	rs79355932	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	10q23.31	RNLS	rs79355932-?		7E-7	(corrected for APOE4 status)	0.14	[NR] unit increase	Illumina [5137218] (imputed)	N
1273	chr10	90195148	90195149	rs1935581	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q23.31	NR	rs1935581-C	NR	8E-11		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1273	chr10	90195148	90195149	rs1935581	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q23.31	RNLS	rs1935581-C	0.63	7E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1273	chr10	90205198	90205199	rs4596981	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q23.31	NR	rs4596981-A	0.3754	5E-10				NR [9056863] (imputed)	N
1273	chr10	90210182	90210183	rs10887823	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	10q23.31	RNLS	rs10887823-A	0.371267	2E-8		0.9749355	NR	Affymetrix [~ 9600000] (imputed)	N
1273	chr10	90236396	90236397	rs17112571	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End stage renal disease in APOL1 risk genotype-negative individuals	945 African American ESRD cases, 988 African American controls, 678 African American lupus nephritis-ESRD cases, 465 African American systemic lupus erythrematosus without nephropathy controls	NA	10q23.31	RNLS	rs17112571-?	NR	3E-6		1.45		Illumina [NR]	N
1273	chr10	90257224	90257225	rs2576171	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q23.31		rs2576171-C	0.37	2E-13		7.37	z score increase	Affymetrix [9061022] (imputed)	N
1273	chr10	90257224	90257225	rs2576171	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q23.31	NR	rs2576171-C	0.3745	1E-13				NR [9056863] (imputed)	N
1273	chr10	90258743	90258744	rs2576170	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q23.31		rs2576170-C	0.37	8E-20		9.11	z score increase	Affymetrix [9061022] (imputed)	N
1273	chr10	90261929	90261930	rs2576169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q23.31		rs2576169-G	NR	1E-9		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1273	chr10	90264139	90264140	rs2477954	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q23.31		rs2477954-C	0.37	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1273	chr10	90293523	90293524	rs2765454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q23.31		rs2765454-A	NR	1E-9		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q23.31		rs2576159-T	NR	9E-9		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q23.31	RNLS	rs2576159-T	0.319337	1E-11		0.016096042	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q23.31	RNLS	rs2576159-T	0.319344	3E-11		0.015718931	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs2576159-T	0.333386	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q23.31	NR	rs2576159-T	0.318234	3E-12		0.013759	[0.0099-0.0176] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs2576159-T	0.332305	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1273	chr10	90296466	90296467	rs2576159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q23.31	NR	rs2576159-T	0.318228	6E-12		0.013595	[0.0097-0.0175] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1274	chr10	90310079	90310080	rs10430643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.31		rs10430643-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1274	chr10	90327652	90327653	rs2576164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q23.31	NR	rs2576164-C	NR	7E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1274	chr10	90327652	90327653	rs2576164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q23.31	NR	rs2576164-C	NR	3E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1274	chr10	90330482	90330483	rs1359582	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	10q23.31	RNLS	rs1359582-?	NR	1E-7		0.09	[NR] unit increase	Affymetrix [329806]	N
1274	chr10	90361835	90361836	rs12777350	33040646	Aherrahrou R	2020-10-12	Circ Res	Genetic Regulation of Atherosclerosis-Relevant Phenotypes in Human Vascular Smooth Muscle Cells.	Aortic vascular smooth muscle cell calcification in response to osteogenic stimuli	69 European ancestry individuals, 64 Hispanic/Latin American individuals, 12 African ancestry individuals, 6 East Asian ancestry individuals	NA	10q23.31	LIPJ	rs12777350-?	NR	4E-9	calcification (osteogenic media)	0.57	[0.39-0.75] unit decrease	Illumina [6315002] (imputed)	N
1274	chr10	90382819	90382820	rs1555839	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming of letters	883 Hispanic American children, 441 African American children	NA	10q23.31	RPL7P34	rs1555839-C	0.16	6E-6				Illumina [1265623]	N
1274	chr10	90382819	90382820	rs1555839	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming and rapid alternating stimulus test performance	883 Hispanic American children, 441 African American children	NA	10q23.31	RPL7P34	rs1555839-C	0.16	4E-8				Illumina [1265623]	N
1274	chr10	90382819	90382820	rs1555839	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid alternating stimulus test for letters/numbers	883 Hispanic American children, 441 African American children	NA	10q23.31	RPL7P34	rs1555839-C	0.16	1E-9				Illumina [1265623]	N
1274	chr10	90382819	90382820	rs1555839	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	10q23.31	RPL7P34	rs1555839-C	NR	2E-7		5.225	NR z score increase	Illumina [1265623]	N
1274	chr10	90403138	90403139	rs139401390	30809046	Schmitz B	2019-02-26	Sci Rep	Genome-wide association study suggests impact of chromosome 10 rs139401390 on kidney function in patients with coronary artery disease.	Estimated glomerular filtration rate in coronary artery disease and impaired kidney function	499 European ancestry cases	574 European ancestry cases	10q23.31	RNLS, LIPL1, LIPF	rs139401390-G	0.025	6E-8		3.72	[0.3-7.14] ml/min/1.73m2 decrease	Affymetrix [> 10000000] (imputed)	N
1274	chr10	90417546	90417547	rs701825	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming of letters	883 Hispanic American children, 441 African American children	NA	10q23.31	intergenic	rs701825-G	0.132	1E-6				Illumina [1265623]	N
1274	chr10	90417546	90417547	rs701825	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming and rapid alternating stimulus test performance	883 Hispanic American children, 441 African American children	NA	10q23.31	intergenic	rs701825-G	0.132	8E-7				Illumina [1265623]	N
1274	chr10	90417546	90417547	rs701825	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid alternating stimulus test for letters/numbers	883 Hispanic American children, 441 African American children	NA	10q23.31	intergenic	rs701825-G	0.132	6E-8				Illumina [1265623]	N
1274	chr10	90431937	90431938	rs12254574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM174A	5,366 Icelandic ancestry individuals	NA	10q23.31		rs12254574-A	0.08982	6E-74		0.591975	[0.53-0.66] unit decrease	Illumina [7506463] (imputed)	N
1274	chr10	90433344	90433345	rs6586145	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	LIPF	rs6586145-A	0.089	1E-107	(Membrane protein FAM174A, FAM174A.6597.24.3)	0.88	[0.8-0.96] unit decrease	Affymetrix [10572788] (imputed)	N
1275	chr10	90458489	90458490	rs146274231	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	10q23.31	LIPF	rs146274231-C	0.01	4E-6		3.22	[1.87-4.57] g/day increase	Affymetrix [10353649] (imputed)	N
1275	chr10	90492201	90492202	rs200583975	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	10q23.31	LIPK	rs200583975-?		1E-7		0.03216		NR [66000]	N
1275	chr10	90509479	90509480	rs1214467	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.31	NR	rs1214467-?	NR	3E-42				Affymetrix [NR]	N
1275	chr10	90525791	90525792	rs10509554	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPN	5,342 Icelandic ancestry individuals	NA	10q23.31		rs10509554-T	0.3245	5E-178		0.506822	[0.47-0.54] unit increase	Illumina [7506463] (imputed)	N
1275	chr10	90525791	90525792	rs10509554	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.31	LIPN	rs10509554-C	0.6725	7E-104	(LIPN, 8097_77_3)	0.54089683	[0.49-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
1275	chr10	90525791	90525792	rs10509554	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	LIPN	rs10509554-T	0.307	7E-499	(Lipase member N, LIPN.8097.77.3)	1.02	[0.98-1.06] unit increase	Affymetrix [10572788] (imputed)	N
1275	chr10	90528177	90528178	rs444386	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10q23.31	NR	rs444386-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1275	chr10	90540325	90540326	rs3927966	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPN	5,342 Icelandic ancestry individuals	NA	10q23.31		rs3927966-A	0.3249	9E-144		0.458694	[0.42-0.49] unit decrease	Illumina [7506463] (imputed)	N
1275	chr10	90540325	90540326	rs3927966	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	NR	rs3927966-A	0.355	5E-436	(Lipase member N, LIPN.8097.77.3)	0.9	[0.86-0.94] unit decrease	Affymetrix [10572788] (imputed)	N
1275	chr10	90553416	90553417	rs303500	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	10q23.31	RP11-15K3.1	rs303500-?	0.294685	4E-6		5.559621	NR	Illumina [5009928] (imputed)	N
1275	chr10	90567133	90567134	rs192527850	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	10q23.31	NR	rs192527850-C		1E-6		0.6273	[0.37-0.88] SD units decrease	NR [10700000] (imputed)	N
1276	chr10	90580329	90580330	rs1661281	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	10q23.31	NR	rs1661281-T	NR	6E-6	(univariable, recessive)	5.284	[2.518-10.764]	Illumina [729373]	N
1276	chr10	90583704	90583705	rs185829646	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	10q23.31	ANKRD22	rs185829646-A	0.998	5E-9	(model 2)	2.7	milli-gravities decrease	Affymetrix [11800000] (imputed)	N
1276	chr10	90588867	90588868	rs11202867	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	10q23.31		rs11202867-?	NR	1E-5		1.202938	[1.10827030355637-1.30569208898246]	Illumina [7827597] (imputed)	N
1276	chr10	90610041	90610042	rs147285445	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		10q23.31	ANKRD22	rs147285445-T	0.998	4E-6	(liability model)	1.03	[0.6-1.46] unit decrease	NR [19725427] (imputed)	N
1276	chr10	90658058	90658059	rs7912777	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q23.31	NR	rs7912777-?	NR	3E-8	(left supramarginal)			NR [9227495] (imputed)	N
1277	chr10	90718526	90718527	rs6421389	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.31	ACTA2	rs6421389-C	0.5015	4E-9		0.1173	[0.078-0.156] mmHg decrease	Affymetrix [NR] (imputed)	N
1277	chr10	90727333	90727334	rs1926203	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	10q23.31	NR	rs1926203-?	NR	1E-6		1.12	[NR]	Illumina [511919]	N
1277	chr10	90730210	90730211	rs11202914	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	10q23.31		rs11202914-T	0.39	8E-11		0.0575	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1277	chr10	90742048	90742049	rs7082720	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	10q23.31	ACTA2	rs7082720-T	NR	1E-7		1.13	[1.08-1.18]	Illumina [7461261] (imputed)	N
1277	chr10	90749962	90749963	rs1800682	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q23.31	ACTA2	rs1800682-?	NR	4E-9	(subset analysis)			Illumina [130052]	N
1277	chr10	90749962	90749963	rs1800682	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	10q23.31	ACTA, FAS	rs1800682-A	0.54	2E-8		1.25	[NR]	Illumina [450000] (imputed)	N
1277	chr10	90750908	90750909	rs12775501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q23.31	ACTA2	rs12775501-T	0.358994	6E-14		0.017349716	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1277	chr10	90752017	90752018	rs6586163	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	10q23.31	ACTA, FAS	rs6586163-A	NR	1E-15		1.23	[1.17-1.29]	Affymetrix, Illumina [> 10000000] (imputed)	N
1277	chr10	90752615	90752616	rs3824729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs3824729-G	0.506366	4E-16				Affymetrix, Illumina [24246363] (imputed)	N
1277	chr10	90752615	90752616	rs3824729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q23.31	NR	rs3824729-G	0.499279	3E-17		0.015263	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1277	chr10	90754486	90754487	rs2031610	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	10q23.31	FAS	rs2031610-C	NR	5E-6		1.49	[1.26-1.77]	Illumina [up to 294091]	N
1277	chr10	90754606	90754607	rs7897395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.31		rs7897395-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1277	chr10	90755956	90755956	rs9658688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.31	FAS	rs9658688-GT	0.499618	4E-13		0.016060969	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1277	chr10	90755963	90755963	rs397971741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q23.31		rs397971741-GT	NR	7E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1277	chr10	90756162	90756163	rs9658691	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10q23.31	FAS	rs9658691-T	NR	2E-6		0.0382599	[0.023-0.054] unit decrease	Illumina [13520550] (imputed)	N
1277	chr10	90759723	90759724	rs4406737	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	10q23.31	ACTA2, FAS	rs4406737-G	0.57	9E-14		1.27	[1.19-1.35]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1277	chr10	90759723	90759724	rs4406737	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	10q23.31	ACTA2, FAS	rs4406737-G	0.57	1E-14		1.27	[1.19-1.33]	Illumina [549934]	N
1277	chr10	90759915	90759916	rs2147419	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q23.31	NR	rs2147419-T	0.717874	2E-9		0.018171	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1277	chr10	90761033	90761035	rs10600180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q23.31	FAS	rs10600180-C	0.486362	1E-12		0.016028477	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1277	chr10	90761033	90761035	rs10600180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q23.31	FAS	rs10600180-C	0.486328	4E-12		0.013918	[0.0099-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1277	chr10	90762375	90762376	rs7069750	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	10q23.31	FAS	rs7069750-C	0.44	3E-8	(additive model)	1.18	[1.11-1.25]	Illumina [123003]	N
1277	chr10	90768964	90768965	rs7911226	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	10q23.31		rs7911226-G	0.2891	5E-30		0.22554	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
1277	chr10	90768964	90768965	rs7911226	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,367 Icelandic ancestry individuals	NA	10q23.31		rs7911226-G	0.2891	2E-34		0.242805	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1277	chr10	90768964	90768965	rs7911226	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAS	5,366 Icelandic ancestry individuals	NA	10q23.31		rs7911226-G	0.2891	4E-29		0.222726	[0.18-0.26] unit decrease	Illumina [7506463] (imputed)	N
1277	chr10	90768964	90768965	rs7911226	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	FAS	rs7911226-G	0.297	4E-43	(Tumor necrosis factor receptor superfamily member 6, FAS.9459.7.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1277	chr10	90768964	90768965	rs7911226	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	FAS	rs7911226-G	0.297	3E-33	(Tumor necrosis factor receptor superfamily member 6, FAS.5392.73.2)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1277	chr10	90769997	90769998	rs982764	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	10q23.31		rs982764-T	0.68	2E-185		0.2436	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1277	chr10	90769997	90769998	rs982764	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.31	FAS	rs982764-T	0.70484375	4E-18	(FAS, 6248_68_3)	0.22278751	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1277	chr10	90769997	90769998	rs982764	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.31	FAS	rs982764-T	0.70484375	3E-21	(FAS, 5392_73_2)	0.2413103	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1277	chr10	90769997	90769998	rs982764	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.31	FAS	rs982764-T	0.70484375	2E-24	(FAS, 9459_7_3)	0.26307023	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1277	chr10	90769997	90769998	rs982764	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	10q23.31	FAS	rs982764-C	0.32	2E-28		0.18	unit decrease	Illumina [5270624] (imputed)	N
1277	chr10	90771828	90771829	rs2234978	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	10q23.31	ACTA2, FAS	rs2234978-A	0.31	6E-6		1.32	[1.16-1.50]	Illumina [2057134] (imputed)	N
1277	chr10	90781628	90781629	rs138698856	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	10q23.31	NR	rs138698856-G		1E-6		0.6309	[0.37-0.89] SD units decrease	NR [10700000] (imputed)	N
1277	chr10	90782826	90782827	rs12257092	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	10q23.31	FAS, ACTA2	rs12257092-T		7E-8		1.27	[NR]	Illumina [up to 9464381] (imputed)	N
1277	chr10	90783319	90783320	rs4934436	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 6 levels	21,758 European ancestry individuals	9,173 individuals	10q23.31		rs4934436-T	0.53	4E-47		0.1165	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1277	chr10	90783934	90783935	rs7089946	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	NR	rs7089946-C	0.454	6E-17	(Tumor necrosis factor receptor superfamily member 6, FAS.9459.7.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1277	chr10	90783934	90783935	rs7089946	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	NR	rs7089946-C	0.454	2E-16	(Tumor necrosis factor receptor superfamily member 6, FAS.5392.73.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1277	chr10	90818376	90818377	rs7920888	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	FAS	rs7920888-A	0.494	9E-6	(WC )	0.03	[NR] cm increase	Illumina [899892]	N
1277	chr10	90818376	90818377	rs7920888	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	FAS	rs7920888-A	0.494	7E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1277	chr10	90818376	90818377	rs7920888	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	FAS	rs7920888-A	0.494	7E-6	(Hip circumference )	0.03	[NR] cm increase	Illumina [899892]	N
1277	chr10	90818376	90818377	rs7920888	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q23.31	FAS	rs7920888-A	0.494	5E-6	(BMI z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1277	chr10	90826778	90826779	rs1937332	21041692	Denny JC	2010-11-01	Circulation	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	10q23.31	CH25H, FAS	rs1937332-G	0.47	7E-7		2.6	[1.58-3.62] ms increase	Illumina [514999]	N
1278	chr10	90840599	90840600	rs2841026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q23.31	NR	rs2841026-G	NR	9E-11		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1278	chr10	90843118	90843119	rs7086087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q23.31		rs7086087-T	NR	2E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1278	chr10	90843885	90843886	rs2211595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q23.31		rs2211595-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1278	chr10	90849703	90849704	rs7897422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q23.31		rs7897422-C	0.191016	4E-13		0.020386485	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1278	chr10	90849703	90849704	rs7897422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q23.31		rs7897422-C	0.191027	6E-12		0.019316692	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1278	chr10	90849703	90849704	rs7897422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs7897422-C	0.279973	4E-15				Affymetrix, Illumina [19872809] (imputed)	N
1278	chr10	90849703	90849704	rs7897422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q23.31	NR	rs7897422-C	0.192058	2E-16		0.020768	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1278	chr10	90852872	90852873	rs73370726	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	10q23.31	NR	rs73370726-C	0.9	2E-8		1.19	[NR]	NR [8546065] (imputed)	N
1278	chr10	90852872	90852873	rs73370726	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	10q23.31	NR	rs73370726-C	0.9	2E-8		1.19	NR	NR [8546065] (imputed)	N
1278	chr10	90857197	90857198	rs7094057	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to gamma-aminobutyric acid receptor agonists (pain relief efficacy)	58 Japanese ancestry individuals	NA	10q23.31	NR	rs7094057-?	NR	3E-6				Illumina [445723]	N
1278	chr10	90899621	90899622	rs10887917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q23.31		rs10887917-C	NR	9E-12		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1278	chr10	90899621	90899622	rs10887917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q23.31	NR	rs10887917-C	NR	7E-11		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1278	chr10	90928960	90928961	rs61854888	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.31	NR	rs61854888-A	0.02265	2E-8	(ORM2)	0.1169	NR unit increase	Illumina [1671387] (imputed)	N
1278	chr10	90928960	90928961	rs61854888	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	10q23.31	NR	rs61854888-?	NR	1E-6		0.1596	[0.095-0.224] unit decrease	Affymetrix [9658292] (imputed)	N
1279	chr10	90964613	90964614	rs11203032	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	10q23.31	CH25H	rs11203032-?	0.10	8E-6	(EA)	1.22	[0.97-1.53]	Affymetrix, Illumina [2478304] (imputed)	N
1279	chr10	90982267	90982268	rs116928232	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	10q23.31		rs116928232-?	NR	2E-10		0.168987	[0.11-0.22] unit decrease	NR [9800000] (imputed)	N
1279	chr10	90989108	90989109	rs11203042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	10q23.31	NR	rs11203042-C	NR	1E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q23.31		rs1412445-T	NR	2E-14		0.0727	[0.054-0.091] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q23.31	LIPA	rs1412445-T	0.34881	1E-20		1.08	[1.06-1.09]	NR [8126035] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	10q23.31	LIPA	rs1412445-?	NR	1E-9		0.0709168	[0.048-0.094] unit increase	Illumina [19707525] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	10q23.31	LIPA	rs1412445-T	0.3392	1E-10		1.1	1.07-1.13	Affymetrix [18689289] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q23.31	LIPA	rs1412445-T	0.337925	2E-11		0.015760344	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q23.31	LIPA	rs1412445-T	0.337916	3E-21		0.022161754	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q23.31	LIPA	rs1412445-T	0.337893	7E-9		0.013563481	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q23.31	NR	rs1412445-T	0.33835	2E-23		0.019321	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q23.31	NR	rs1412445-T	0.338068	3E-25		0.021069	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1279	chr10	91002803	91002804	rs1412445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.31		rs1412445-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1279	chr10	91002844	91002845	rs1320496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q23.31		rs1320496-T	0.329312541	1E-11		0.096252926	[0.068-0.124] unit increase	Illumina [13427135] (imputed)	N
1279	chr10	91002844	91002845	rs1320496	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q23.31	NR	rs1320496-T	NR	5E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix [9000000] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q23.31		rs1412444-T	NR	1E-24		0.0237	[0.019-0.028] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	10q23.31	LIPA	rs1412444-T	0.344095	2E-9		1.07	[1.05-1.09]	NR [10903881] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	10q23.31	NR	rs1412444-T	0.42	7E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [at least 119674] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q23.31	LIPA	rs1412444-?	NR	4E-29		0.0584797	[0.048-0.069] unit increase	Illumina [4804024] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs1412444-T	0.321679	3E-23				Affymetrix, Illumina [24649327] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs1412444-T	0.329652	2E-25				Affymetrix, Illumina [23114412] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q23.31	NR	rs1412444-C	0.661177	1E-35		0.0271897	[0.023-0.031] unit decrease	NR [NR]	N
1279	chr10	91002926	91002927	rs1412444	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q23.31	LIPA	rs1412444-T	0.3527	2E-21		0.0559	[0.044-0.067] unit increase	Affymetrix [at least 7947838] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q23.31	LIPA	rs1412444-T	0.355	3E-22		0.064	[0.05-0.078] unit increase	Affymetrix [7947838] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q23.31	LIPA	rs1412444-T	0.369131	5E-12		1.07	[1.05- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1279	chr10	91002926	91002927	rs1412444	21606135	Wild PS	2011-05-23	Circ Cardiovasc Genet	A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.	Coronary heart disease	2,078 European ancestry cases, 2,953 European ancestry controls	19,350 European ancestry cases, 35,408 European ancestry controls	10q23.31	LIPA	rs1412444-T	0.32	4E-8		1.1	[1.07-1.14]	Affymetrix [608247]	N
1279	chr10	91002926	91002927	rs1412444	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10q23.31	LIPA	rs1412444-T	0.42	3E-13		1.09	[1.07-1.12]	Illumina [574919]	N
1279	chr10	91003418	91003419	rs1332329	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q23.31	LIPA	rs1332329-C	0.36	3E-13		1.08	[1.06-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1279	chr10	91004885	91004886	rs2246942	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q23.31	LIPA	rs2246942-A	0.6515	2E-24		0.0706	[0.057-0.084] unit decrease	NR [8041861] (imputed)	N
1279	chr10	91004885	91004886	rs2246942	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	10q23.31	LIPA	rs2246942-G	0.349	4E-16		1.08	[1.06-1.10]	Affymetrix [9149595] (imputed)	N
1279	chr10	91004915	91004916	rs2246941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	10q23.31	LIPA	rs2246941-A	0.3434	6E-9		0.02191836	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1279	chr10	91004915	91004916	rs2246941	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	10q23.31	LIPA	rs2246941-A	0.3434	7E-9		0.0218553	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1279	chr10	91005951	91005952	rs2246828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q23.31		rs2246828-A	NR	8E-11		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1279	chr10	91005951	91005952	rs2246828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.31	LIPA	rs2246828-A	0.298537	5E-17		0.02025993	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr10	91007359	91007360	rs1051338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN2	5,364 Icelandic ancestry individuals	NA	10q23.31		rs1051338-G	0.3265	4E-15		0.157933	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1279	chr10	91007359	91007360	rs1051338	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	10q23.31	LIPA	rs1051338-G	0.31	2E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1279	chr10	91008878	91008879	rs2250644	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	10q23.31	LIPA	rs2250644-T	0.35	3E-16		1.07	[1.05-1.09]	Illumina [5167567] (imputed)	N
1279	chr10	91008878	91008879	rs2250644	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	10q23.31	LIPA	rs2250644-T	0.33	2E-8		0.0054	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1279	chr10	91010478	91010479	rs2243547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q23.31		rs2243547-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1279	chr10	91011457	91011458	rs1332328	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	10q23.31	LIPA	rs1332328-T	0.35	3E-8	(BMI-adjusted)	0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1279	chr10	91012223	91012226	rs533201501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q23.31		rs533201501-G	NR	1E-14		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1279	chr10	91066768	91066769	rs1727	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QC	5,368 Icelandic ancestry individuals	NA	10q23.31		rs1727-C	0.2575	8E-17		0.183466	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1279	chr10	91066768	91066769	rs1727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q23.31		rs1727-A	NR	2E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1279	chr10	91067437	91067438	rs4934470	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q23.31	IFIT2	rs4934470-C	0.73	2E-14	(Complement C1q subcomponent subunit C, C1QC.14100.63.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1279	chr10	91075344	91075345	rs35064797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q23.31		rs35064797-G	NR	3E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1279	chr10	91079427	91079428	rs181897718	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	10q23.31	Intergenic	rs181897718-C	NR	7E-6	(men)	0.335902	[0.19-0.48] unit increase	Illumina [13520550] (imputed)	N
1280	chr10	91154522	91154523	rs565848441	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q23.31	NR	rs565848441-?	NR	6E-7		0.831738	[0.5-1.16] unit decrease	NR [13958389] (imputed)	N
1280	chr10	91210771	91210772	rs17478213	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.31	NR	rs17478213-C	0.0331	2E-8	(GSTP1)	0.1258	NR unit increase	Illumina [1671387] (imputed)	N
1281	chr10	91257753	91257754	rs303183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q23.31	Intergenic	rs303183-T	0.3157	3E-9	(MTAG)	0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1281	chr10	91257753	91257754	rs303183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q23.31	Intergenic	rs303183-C	0.6843	8E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1281	chr10	91269886	91269887	rs2138042	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q23.31	Intergenic	rs2138042-A	0.1596	1E-8	(MTAG)	0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1281	chr10	91277038	91277039	rs56272844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.31		rs56272844-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	8E-9	(-4 ms)	0.0821737	[0.054-0.11] unit increase	Affymetrix [10000000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	4E-9	(2 ms)	0.0836323	[0.056-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	2E-9	(0 ms)	0.0856712	[0.058-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	2E-9	(-2 ms)	0.084944	[0.057-0.113] unit increase	Affymetrix [10000000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	2E-8	(4 ms)	0.0810776	[0.053-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1281	chr10	91278749	91278750	rs117524646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	SLC16A12	rs117524646-A	0.958085	2E-8	(-6 ms)	0.0807189	[0.053-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1282	chr10	91371328	91371329	rs41297163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q23.31	PANK1	rs41297163-G	0.108219	6E-10		0.02246882	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr10	91372532	91372533	rs11185790	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	10q23.31	PANK1	rs11185790-A	0.21	3E-7	(INS)	0.31	[0.18-0.44] mmol/l decrease	Illumina [329091]	N
1282	chr10	91393288	91393289	rs9783206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Schizophrenia	6,334 European ancestry cases, 445,120 European ancestry controls, 99 East Asian ancestry cases, 177,794 East Asian ancestry controls	NA	10q23.31		rs9783206-TT	NR	3E-8		0.2589	[0.17-0.35] unit increase	Affymetrix, Illumina [25843027] (imputed)	N
1282	chr10	91395427	91395428	rs1359624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs1359624-C	0.361145	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
1282	chr10	91395427	91395428	rs1359624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q23.31	NR	rs1359624-C	0.260473	1E-11		0.014346	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1282	chr10	91398448	91398449	rs7073802	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q23.31	Intergenic	rs7073802-A	0.284	4E-10		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1282	chr10	91408755	91408756	rs7081788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q23.31	NR	rs7081788-A	0.242608	3E-21		0.020459	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1282	chr10	91447418	91447419	rs4934494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q23.31	RP11-80H5.9	rs4934494-A	0.2262	5E-9		0.02417025	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1282	chr10	91474538	91474539	rs12414269	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q23.31		rs12414269-A	0.23	3E-10		6.3	z score increase	Affymetrix [9061022] (imputed)	N
1283	chr10	91490086	91490087	rs10881645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.31	KIF20B	rs10881645-G	0.471294	1E-12		0.01569081	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr10	91490086	91490087	rs10881645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q23.31	KIF20B	rs10881645-G	0.471478	3E-9		0.013305835	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr10	91490086	91490087	rs10881645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.31		rs10881645-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1283	chr10	91505333	91505334	rs77291744	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q23.31		rs77291744-A	0.25	2E-11		6.73	z score increase	Affymetrix [9061022] (imputed)	N
1283	chr10	91505767	91505768	rs12414650	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q23.31		rs12414650-T	0.25	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1283	chr10	91510981	91510982	rs1326201	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q23.31	Intergenic	rs1326201-T	0.2852	2E-10	(MTAG)	0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr10	91524011	91524012	rs12775091	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10q23.31		rs12775091-?	NR	3E-10		0.0155618	[0.011-0.02] unit increase	NR [6912294] (imputed)	N
1283	chr10	91537519	91537520	rs3962370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.31	NR	rs3962370-T	0.24293	9E-20				Affymetrix, Illumina [24332387] (imputed)	N
1283	chr10	91543137	91543138	rs7919758	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q23.31	Intergenic	rs7919758-T	0.2824	2E-10	(MTAG)	0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr10	91548437	91548438	rs377291101	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q23.31	NR	rs377291101-C	0.2368	3E-12				NR [9056863] (imputed)	N
1283	chr10	91549222	91549223	rs72818783	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q23.31	NR	rs72818783-A	0.239	3E-9				NR [9056863] (imputed)	N
1283	chr10	91574623	91574624	rs7071258	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	10q23.31	PANK1, KIF20B	rs7071258-A	0.216	8E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [11947015] (imputed)	N
1283	chr10	91574623	91574624	rs7071258	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	10q23.31	PANK1, KIF20B	rs7071258-A	0.2156	1E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [11353757] (imputed)	N
1283	chr10	91592611	91592612	rs2182398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q23.31		rs2182398-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1284	chr10	91658708	91658709	rs79956784	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	10q23.31	SNRPD2P1	rs79956784-T	NR	3E-6		0.2604374	[0.15-0.37] unit decrease	Affymetrix [9576485] (imputed)	N
1284	chr10	91681179	91681180	rs79297719	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (4 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	10q23.31		rs79297719-?	NR	8E-6				Illumina [1365315]	N
1284	chr10	91691499	91691500	rs181778161	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.31	AK093219	rs181778161-G	0.999	6E-7	(AA)	2.685	NR unit increase	Illumina [NR] (imputed)	N
1284	chr10	91694735	91694736	rs140053855	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q23.31	NR	rs140053855-T	0.054	7E-6		0.380278	[0.22-0.55] unit decrease	Illumina [~ 6600000] (imputed)	N
1284	chr10	91701704	91701705	rs12764517	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (louvain modularity)	18,445 British ancestry individuals	NA	10q23.31		rs12764517-A	0.974	5E-8		0.177	[0.11-0.24] unit increase	Affymetrix [9926107] (imputed)	N
1284	chr10	91706429	91706430	rs184591857	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q23.31	NR	rs184591857-?	NR	9E-8		1.83772	[1.16-2.51] unit increase	NR [13958389] (imputed)	N
1284	chr10	91741436	91741437	rs10509586	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	10q23.31	KIF20B	rs10509586-?		4E-7	(EA)	9.3	[NR]	Illumina [936149]	N
1285	chr10	91772177	91772178	rs7088647	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q23.31	intergenic	rs7088647-?	NR	7E-6		0.174	[0.076-0.272] unit decrease	Illumina [at least 13000000] (imputed)	N
1285	chr10	91822336	91822337	rs12253356	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	10q23.31	NR	rs12253356-A	0.1314	5E-8		0.0639	[0.041-0.087] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1285	chr10	91860599	91860600	rs17130391	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q23.31	NR	rs17130391-?	NR	7E-6	(AA)	19.63	[17.73-21.53]	Illumina [905956]	N
1286	chr10	91937739	91937740	rs4933565	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	10q23.31	LINC01375	rs4933565-?	NR	1E-6		1.637	[NR]	Illumina [2686126] (imputed)	N
1286	chr10	91955159	91955160	rs78104307	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Morganella abundance in stool	5,959 Finnish ancestry individuals	NA	10q23.31		rs78104307-C	0.0359724	8E-9		0.0957177	[0.063-0.128] unit increase	Illumina [7980478] (imputed)	N
1286	chr10	91962669	91962670	rs2250245	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	10q23.31	intergenic	rs2250245-G	NR	2E-6		0.112	[0.067-0.157] unit decrease	Illumina [628922]	N
1286	chr10	91963462	91963463	rs2250149	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	10q23.31	intergenic	rs2250149-T	NR	1E-6		0.114	[0.069-0.159] unit increase	Illumina [628922]	N
1287	chr10	92021573	92021574	rs75297609	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	10q23.31	RN7SKP143	rs75297609-?	NR	1E-8	(boys)	2.72	[NR] unit decrease	Illumina [774433] (imputed)	N
1287	chr10	92079841	92079842	rs74148555	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	10q23.31	NR	rs74148555-C		3E-6		0.3732	[0.22-0.52] SD units increase	NR [10700000] (imputed)	N
1287	chr10	92079841	92079842	rs74148555	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	10q23.31	NR	rs74148555-C		2E-6		0.3715	[0.22-0.52] SD units increase	NR [10700000] (imputed)	N
1287	chr10	92109326	92109327	rs78344156	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q23.31		rs78344156-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1287	chr10	92121336	92121337	rs17094111	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q23.31		rs17094111-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1287	chr10	92135811	92135812	rs78467981	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q23.31		rs78467981-?	NR	9E-10				Affymetrix [NR] (imputed)	N
1287	chr10	92142236	92142237	rs76443638	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q23.31		rs76443638-?	NR	9E-10				Affymetrix [NR] (imputed)	N
1288	chr10	92152199	92152200	rs58616815	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q23.31	NR	rs58616815-?	NR	2E-6	(Japanese)	0.3566	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1288	chr10	92233475	92233476	rs73320584	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q23.31	Intergenic	rs73320584-A	NR	7E-7	(between families)	4.96	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1288	chr10	92248008	92248009	rs1274351	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	10q23.31	BC037970	rs1274351-A	0.123	2E-6		0.5068	[0.31-0.7] unit decrease	Illumina [533687]	N
1288	chr10	92274481	92274482	rs1274323	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	10q23.31	HTR7	rs1274323-G	0.127	2E-6		0.5038	[0.31-0.7] unit decrease	Illumina [533687]	N
1289	chr10	92404775	92404776	rs2710735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.31	RPP30	rs2710735-?	NR	5E-6	(xanthosine)	0.15383442	[0.088-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1290	chr10	92438848	92438849	rs73310256	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q23.31	HTR7	rs73310256-T	NR	3E-7	(between families)	5.123	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1290	chr10	92440794	92440795	rs74411983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.31	NR	rs74411983-G	0.0331	2E-8	(TPM3)	0.1974	NR unit increase	Illumina [1671387] (imputed)	N
1290	chr10	92441143	92441144	rs80254307	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.31	NR	rs80254307-T	0.01916	5E-9	(MAP4)	0.01844	NR unit increase	Illumina [1671387] (imputed)	N
1290	chr10	92453714	92453715	rs11528045	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	10q23.31	HTR7	rs11528045-?	NR	5E-7		0.53	[0.31-0.75] unit increase	Affymetrix [629686]	N
1291	chr10	92592955	92592956	rs12249377	24736177	Sprooten E	2014-04-13	Neuroimage	Common genetic variants and gene expression associated with white matter microstructure in the human brain.	White matter microstructure (global fractional anisotropy)	727 Mexican American individuals from 65 families, 49 Mexican American individuals	NA	10q23.31	HTR7	rs12249377-?		3E-10				Illumina [929187]	N
1291	chr10	92632898	92632899	rs4586057	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	10q23.31	RPP30	rs4586057-T	NR	5E-6		0.141	[0.080-0.202] unit increase	Illumina [628922]	N
1292	chr10	92684952	92684953	rs78980826	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q23.31	ANKRD1, XLOC_008559	rs78980826-G	0.9173	2E-8		0.144	[0.094-0.194] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1292	chr10	92692046	92692047	rs9664170	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial minimum volume	35,658 British ancestry individuals	NA	10q23.31		rs9664170-?	NR	7E-10		0.297	[0.2-0.39] mL/m2 decrease	Affymetrix [10600000] (imputed)	N
1292	chr10	92692046	92692047	rs9664170	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial maximum volume	35,658 British ancestry individuals	NA	10q23.31		rs9664170-?	NR	4E-8		0.435	[0.28-0.59] mL/m2 decrease	Affymetrix [10600000] (imputed)	N
1292	chr10	92692046	92692047	rs9664170	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	10q23.31		rs9664170-?	NR	3E-9		0.386	[0.26-0.51] unit increase	Affymetrix [10600000] (imputed)	N
1292	chr10	92706104	92706105	rs10736059	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	ANKRD1	rs10736059-C	0.428674	3E-9	(-152 ms)	0.0335652	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1292	chr10	92706104	92706105	rs10736059	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	ANKRD1	rs10736059-C	0.428674	3E-8	(-144 ms)	0.0313432	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1292	chr10	92706104	92706105	rs10736059	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.31	ANKRD1	rs10736059-C	0.428674	1E-8	(-154 ms)	0.0322733	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1292	chr10	92712251	92712252	rs4933627	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q23.31	ANKRD1	rs4933627-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
1292	chr10	92744743	92744744	rs747334	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	10q23.31	NR	rs747334-G		5E-6		0.0751	[0.043-0.107] SD units decrease	NR [10700000] (imputed)	N
1293	chr10	92828905	92828906	rs11186433	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q23.31	NR	rs11186433-A		3E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1293	chr10	92912772	92912773	rs17553262	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q23.32		rs17553262-A	0.885	5E-9		0.018	[0.012-0.024] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1293	chr10	92926699	92926700	rs11186478	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q23.32	NR	rs11186478-?	NR	3E-6		4.684	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1294	chr10	92990602	92990603	rs116997468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs116997468-G	NR	8E-9		0.0259719	[0.017-0.035] unit increase	Affymetrix [321016] (imputed)	N
1294	chr10	93010382	93010383	rs2450444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q23.32	PCGF5	rs2450444-A	NR	3E-8		0.0164887	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1294	chr10	93010382	93010383	rs2450444	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q23.32	PCGF5	rs2450444-G	0.651052	2E-8		0.00807358	[0.0053-0.0109] unit increase	Affymetrix [12370749]	N
1294	chr10	93011740	93011741	rs2648717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs2648717-C	NR	4E-13		0.0261195	[0.019-0.033] unit increase	Affymetrix [321016] (imputed)	N
1294	chr10	93015078	93015079	rs2648725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q23.32		rs2648725-A	NR	1E-33		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1294	chr10	93015078	93015079	rs2648725	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q23.32	PCGF5	rs2648725-A	0.2134	8E-13		0.0165	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1294	chr10	93015078	93015079	rs2648725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q23.32	NR	rs2648725-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1294	chr10	93015078	93015079	rs2648725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.32		rs2648725-?	NR	5E-49				NR [~ 8900000] (imputed)	N
1294	chr10	93026995	93026996	rs2648721	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q23.32	PCGF5	rs2648721-G	0.29610000000000003	2E-8		1.0240855		Affymetrix [11880941] (imputed)	N
1294	chr10	93032942	93032943	rs2631681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs2631681-T	NR	5E-13		0.0217178	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1294	chr10	93037408	93037409	rs2631676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q23.32		rs2631676-G	NR	3E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1294	chr10	93037408	93037409	rs2631676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.32	NR	rs2631676-G	0.158812	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1294	chr10	93037408	93037409	rs2631676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q23.32	NR	rs2631676-G	0.188969	5E-12		0.016265	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1294	chr10	93037408	93037409	rs2631676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.32	NR	rs2631676-G	0.159869	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
1294	chr10	93037408	93037409	rs2631676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q23.32	NR	rs2631676-G	0.189021	4E-12		0.016335	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1294	chr10	93038529	93038530	rs2450445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q23.32		rs2450445-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1294	chr10	93051743	93051744	rs2248920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs2248920-C	NR	2E-10		0.0198012	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1294	chr10	93055831	93055832	rs2248443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs2248443-G	NR	6E-9		0.0167725	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1294	chr10	93060348	93060349	rs2245310	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q23.32	NR	rs2245310-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1295	chr10	93061850	93061851	rs147568678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.32	PCGF5	rs147568678-C	NR	3E-9		0.0196986	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1295	chr10	93061850	93061851	rs147568678	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q23.32	PCGF5	rs147568678-T	0.7674	1E-6		0.0371	[0.022-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1295	chr10	93062110	93062111	rs2450448	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q23.32	NA	rs2450448-A	0.6874	4E-10		0.0128	[0.0087-0.0169] unit increase	NR [~ 27400000] (imputed)	N
1296	chr10	93271015	93271016	rs537322302	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	10q23.32	HECTD2	rs537322302-G	0.003	6E-7		3.85	[2.27-6.54]	Affymetrix, Illumina [10790934] (imputed)	N
1296	chr10	93278960	93278961	rs17472998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.32		rs17472998-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1296	chr10	93300312	93300313	rs72819225	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	10q23.32	NR	rs72819225-?	NR	1E-6		0.032	[0.019-0.045] unit decrease	Illumina [at least 560000] (imputed)	N
1296	chr10	93306965	93306966	rs4933661	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	10q23.32	HECTD2	rs4933661-G	0.356	2E-9		0.005	[0.004-0.007] unit increase	NR [57525634] (imputed)	N
1297	chr10	93343787	93343788	rs144809869	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	10q23.32	intergenic	rs144809869-C	0.003	7E-7		1.8279	[1.1-2.55] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1297	chr10	93348119	93348120	rs1329650	20418890	Tobacco and Genetics Consortium	2010-04-25	Nat Genet	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	10q23.32	LOC100188947	rs1329650-T	0.28	6E-10	(CPD)	0.37	[0.25-0.49] CPD decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1297	chr10	93349866	93349867	rs72821233	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q23.32	NR	rs72821233-G	0.271372	6E-10		0.043665368	[0.03-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1297	chr10	93349866	93349867	rs72821233	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q23.32	Intergenic	rs72821233-T	0.2663	5E-10		0.0201	[0.014-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1297	chr10	93365014	93365015	rs7911956	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	10q23.32	NR	rs7911956-G	0.084	3E-6		0.2386	[0.14-0.34] unit increase	Illumina [up to 730525]	N
1297	chr10	93369095	93369096	rs4933677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q23.32	Intergenic	rs4933677-A	0.3783	5E-11	(MTAG)	0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr10	93442239	93442240	rs1891275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q23.32	Intergenic	rs1891275-T	0.4484	5E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr10	93442239	93442240	rs1891275	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q23.32	NR	rs1891275-?	NR	1E-6		4.834	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1297	chr10	93442239	93442240	rs1891275	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q23.32	GAPDHP28	rs1891275-T	NR	6E-10		0.01819253	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1297	chr10	93442378	93442379	rs1891273	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q23.32	NR	rs1891273-T	NR	3E-8		5.532	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1298	chr10	93507963	93507964	rs10881959	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	10q23.32	TNKS2	rs10881959-?	NR	7E-11		0.046	NR L increase	Affymetrix [9390170] (imputed)	N
1298	chr10	93568409	93568410	rs12778632	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	10q23.32	NR	rs12778632-?		8E-6		5.5519	[4.8-6.31]	NR [NR] (imputed)	N
1299	chr10	93592702	93592703	rs147689733	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q23.32	BTAF1	rs147689733-T	0.021	1E-27		1.31	[1.25-1.38]	Affymetrix, Illumina [11800000] (imputed)	N
1299	chr10	93615902	93615903	rs2259305	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q23.32	NR	rs2259305-G	0.523013	8E-28		0.0124841	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
1299	chr10	93615902	93615903	rs2259305	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q23.32	NR	rs2259305-G	0.523013	3E-22		0.0118863	[0.0095-0.0143] unit increase	Affymetrix [16582614] (imputed)	N
1299	chr10	93629498	93629499	rs1772189	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q23.32	NR	rs1772189-T	0.522612	9E-54		0.0120264	[0.01-0.014] unit increase	Affymetrix [16582909] (imputed)	N
1299	chr10	93629498	93629499	rs1772189	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q23.32	NR	rs1772189-T	0.522612	7E-39		0.011502	[0.0097-0.0133] unit increase	Affymetrix [16582965] (imputed)	N
1299	chr10	93631955	93631956	rs11186719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q23.32	NR	rs11186719-A	0.522156	9E-25		0.0118052	[0.0094-0.0142] unit increase	Affymetrix [16585854] (imputed)	N
1299	chr10	93631955	93631956	rs11186719	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q23.32	NR	rs11186719-A	0.522156	5E-18		0.011624	[0.0089-0.0144] unit increase	Affymetrix [16585866] (imputed)	N
1299	chr10	93632849	93632851	rs202244335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q23.32	NR	rs202244335-D	0.300398	1E-11		0.015332	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1299	chr10	93632849	93632851	rs202244335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q23.32	NR	rs202244335-D	0.300484	2E-12		0.016108	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1299	chr10	93632851	93632852	rs59638240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.32	NR	rs59638240-G	0.299738	9E-10		0.014986453	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1299	chr10	93632851	93632852	rs59638240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q23.32		rs59638240-G	0.299764	3E-11		0.016277136	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1299	chr10	93632859	93632860	rs398075413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q23.32		rs398075413-G	NR	6E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	1E-9		0.0246245	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	7E-10		0.0248942	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	2E-11		0.0272946	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	4E-11		0.0266432	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	4E-8		0.022262	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	2E-8		0.0228463	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	4E-8		0.022381	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	3E-8		0.0225154	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	10q23.32		rs1890896-T	0.472549	3E-8		0.0226027	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q23.32		rs1890896-C	NR	3E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1299	chr10	93641756	93641757	rs1890896	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q23.32	TNKS2	rs1890896-T	0.471906	4E-18		0.00196897	[0.0015-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1299	chr10	93641868	93641869	rs10881987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	10q23.32		rs10881987-A	0.47255	1E-10		0.0261675	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1299	chr10	93643978	93643979	rs10881988	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q23.32	TNKS2, FGFBP3	rs10881988-A	0.49	6E-11		6.54	z-score increase	Affymetrix [4311822] (imputed)	N
1299	chr10	93646267	93646268	rs4565819	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10q23.32	NR	rs4565819-G	0.171175	2E-9		0.0158151	[0.011-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1299	chr10	93647411	93647412	rs7089122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	10q23.32	NR	rs7089122-T	0.177718	2E-14		0.024365	[0.018-0.031] unit increase	Affymetrix [16585745] (imputed)	N
1299	chr10	93649883	93649884	rs1417256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q23.32		rs1417256-C	NR	6E-9		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1299	chr10	93650602	93650603	rs7912830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.32		rs7912830-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1299	chr10	93654380	93654381	rs77240081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q23.32	NR	rs77240081-T	NR	1E-9		0.0256	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1299	chr10	93658214	93658215	rs76264073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.32		rs76264073-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1299	chr10	93666348	93666349	rs11186737	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGFBP3	5,359 Icelandic ancestry individuals	NA	10q23.32		rs11186737-T	0.2588	1E-51		0.311423	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1299	chr10	93666348	93666349	rs11186737	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.32	FGFBP3	rs11186737-C	0.74578125	6E-28	(FGFBP3, 11219_95_3)	0.30232832	[0.25-0.36] unit increase	Illumina [> 1000000] (imputed)	N
1299	chr10	93713362	93713363	rs10748574	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q23.32	NR	rs10748574-?	NR	1E-33				Affymetrix [NR]	N
1300	chr10	93720143	93720144	rs72823192	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q23.32	NR	rs72823192-T	0.263419	2E-8		0.04020207	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1300	chr10	93721240	93721241	rs11186771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q23.32		rs11186771-G	NR	1E-13		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1300	chr10	93743171	93743172	rs1474051	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q23.32		rs1474051-G	0.63	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1300	chr10	93786556	93786557	rs61876492	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	10q23.32	NR	rs61876492-C	0.38	9E-9		0.012904	[0.0085-0.0173] unit increase	NR [9732723] (imputed)	N
1300	chr10	93810741	93810742	rs12252682	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	10q23.32	NR	rs12252682-C	0.02	6E-7		2.45	unit decrease	Illumina [8591557] (imputed)	N
1300	chr10	93810871	93810872	rs1776209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q23.32		rs1776209-G	NR	5E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1300	chr10	93810871	93810872	rs1776209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q23.32		rs1776209-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1301	chr10	93888809	93888810	rs61875203	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q23.32	CPEB3	rs61875203-T	0.2773	2E-9		1.0262383		Affymetrix [11880941] (imputed)	N
1301	chr10	93924662	93924663	rs7078559	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q23.32	HHEX, IDE	rs7078559-T	0.5783	4E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1301	chr10	93932285	93932286	rs72807246	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q23.32	NR	rs72807246-G	0.139	3E-6	(EA)	0.0429	[0.025-0.061] unit decrease	Illumina [~ 11800000] (imputed)	N
1301	chr10	93956551	93956552	rs7071943	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q23.32	NR	rs7071943-G	0.6532	2E-19		0.0443	[0.035-0.054] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1302	chr10	93997694	93997695	rs7091853	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q23.32	NR	rs7091853-C	0.57	4E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix [2446094] (imputed)	N
1302	chr10	93997694	93997695	rs7091853	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q23.32	NR	rs7091853-C	0.57	5E-8				Affymetrix [2446094] (imputed)	N
1302	chr10	94009778	94009778	rs139850091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q23.32	CPEB3	rs139850091-CATAT	0.259676	9E-10		0.015852423	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1303	chr10	94114632	94114633	rs950732	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q23.33	NA	rs950732-T	0.5746	2E-11		0.012	[0.0085-0.0155] unit increase	NR [~ 27400000] (imputed)	N
1303	chr10	94148330	94148331	rs2771267	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q23.33	NR	rs2771267-T	0.7549	1E-6	(EA)	0.0393	[0.023-0.055] unit increase	Illumina [~ 11800000] (imputed)	N
1303	chr10	94168796	94168797	rs2263638	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	10q23.33	IDE	rs2263638-?	0.63	3E-6	(Never smoker)	1.2821	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1303	chr10	94175471	94175472	rs7101083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q23.33		rs7101083-G	NR	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1303	chr10	94182242	94182243	rs189924441	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	10q23.33	NR	rs189924441-G	0.030000000000000027	8E-6		1.4925373	[1.25-1.79]	NR [at least 8807005] (imputed)	N
1303	chr10	94218297	94218298	rs12781670	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	10q23.33	NR	rs12781670-?	NR	8E-7		0.1957	[0.12-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
1304	chr10	94250040	94250041	rs181930772	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	10q23.33	IDE	rs181930772-A	0.9949	8E-6		0.3054	[0.17-0.44] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1304	chr10	94259179	94259180	rs11187027	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q23.33	IDE	rs11187027-G	0.788878	3E-10		0.0153349	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1304	chr10	94259179	94259180	rs11187027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or type 2 diabetes	28,862 European ancestry asthma cases, 422,048 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	10q23.33	NR	rs11187027-?	NR	4E-8				Affymetrix [up to 8270000] (imputed)	N
1304	chr10	94284068	94284069	rs139550538	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	10q23.33	IDE	rs139550538-?		2E-9		0.4807	[NR] unit increase	Illumina [7174392] (imputed)	N
1304	chr10	94347829	94347830	rs6583826	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q23.33		rs6583826-?	NR	4E-8		0.00501262	[0.0032-0.0068] unit increase	NR [NR]	N
1304	chr10	94347829	94347830	rs6583826	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	10q23.33	KIF11	rs6583826-G	0.26	7E-6	(Chinese+Malay+Indian)	1.18	[1.10-1.27]	Illumina [~ 2000000] (imputed)	N
1304	chr10	94362927	94362928	rs7096101	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	10q23.33	KIF11	rs7096101-?	NR	2E-14				NR [3144808] (imputed)	N
1304	chr10	94367866	94367867	rs10882087	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	10q23.33	KIF11	rs10882087-T	0.42088899	9E-6		0.00947478	[0.0053-0.0136] unit decrease	Affymetrix [9463307] (imputed)	N
1304	chr10	94367866	94367867	rs10882087	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	10q23.33	KIF11	rs10882087-T	0.42088899	7E-6		0.00338989	[0.0019-0.0049] unit decrease	Affymetrix [9463307] (imputed)	N
1305	chr10	94374376	94374377	rs10882091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs10882091-T	0.675978	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
1305	chr10	94374376	94374377	rs10882091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q23.33	NR	rs10882091-T	0.596178	4E-12		0.013128	[0.0094-0.0168] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1305	chr10	94374602	94374603	rs11187097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q23.33	NR	rs11187097-C	NR	3E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1305	chr10	94382039	94382040	rs7894183	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	10q23.33	KIF11	rs7894183-A	NR	3E-7		5.103	NR z score increase	Illumina [8978282] (imputed)	N
1305	chr10	94384514	94384514	rs113092121	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10q23.33	KIF11	rs113092121-TTCTC	0.57	1E-12				NR [> 9500000] (imputed)	N
1305	chr10	94384514	94384514	rs113092121	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	10q23.33	KIF11	rs113092121-?	0.562	8E-7		1.051	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
1305	chr10	94384514	94384514	rs113092121	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	10q23.33	KIF11	rs113092121-?	NR	3E-20		1.07	[1.06-1.08]	Affymetrix [9000000] (imputed)	N
1305	chr10	94384514	94384514	rs113092121	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	10q23.33	KIF11	rs113092121-TTCTC	NR	1E-12		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1305	chr10	94391439	94391441	rs1227677510	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	10q23.33	KIF11	rs1227677510-C	0.556886	1E-12		1.0440534	[1.03175279853403-1.056500748371]	NR [9572556] (imputed)	N
1305	chr10	94408206	94408207	rs72811230	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	10q23.33	NR	rs72811230-?	NR	7E-7		0.2065	[0.13-0.29] unit increase	Illumina [at least 560000] (imputed)	N
1305	chr10	94416228	94416229	rs7071912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.33	RN7SL644P	rs7071912-G	0.517393	2E-9		0.013181413	[0.0089-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1305	chr10	94424072	94424073	rs2153827	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	10q23.33	KIF11	rs2153827-T	0.34	1E-9		1.11	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	10q23.33		rs7918084-C	0.45	4E-21				Affymetrix [10369434] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q23.33	EIF2S2P3	rs7918084-T	0.550017	3E-32		0.026514594	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q23.33	EIF2S2P3	rs7918084-T	0.550033	7E-39		0.02905783	[0.025-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs7918084-T	0.609311	3E-46				Affymetrix, Illumina [19872809] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	10q23.33	NR	rs7918084-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	10q23.33	NR	rs7918084-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	10q23.33	HHEX, IDE, KIF11	rs7918084-T	0.549135	7E-10		1.0388168	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q23.33		rs7918084-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1305	chr10	94429466	94429467	rs7918084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q23.33		rs7918084-?	NR	1E-53				NR [~ 8900000] (imputed)	N
1305	chr10	94429906	94429907	rs11187129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q23.33	EIF2S2P3	rs11187129-C	0.432521	2E-16		0.0186206	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1305	chr10	94430496	94430497	rs2185756	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	10q23.33	NR	rs2185756-?	NR	3E-29				Affymetrix [up to 8270000] (imputed)	N
1305	chr10	94430524	94430525	rs9419741	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	10q23.33	KIF11	rs9419741-?	NR	1E-8		0.0727	[0.048-0.098] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1305	chr10	94430524	94430525	rs9419741	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	10q23.33	KIF11, HHEX	rs9419741-A	0.52	2E-9		0.077	[0.052-0.102] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1305	chr10	94431999	94432000	rs2497318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	10q23.33		rs2497318-T	NR	7E-10		0.054	[0.037-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1305	chr10	94431999	94432000	rs2497318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q23.33	NR	rs2497318-T	0.442619	2E-49		0.029864	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1305	chr10	94431999	94432000	rs2497318	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	10q23.33	Metazoa_SRP	rs2497318-T	0.447177	6E-9		0.05280888	[0.035-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1305	chr10	94431999	94432000	rs2497318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	10q23.33		rs2497318-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1305	chr10	94431999	94432000	rs2497318	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q23.33	EIF2S2P3	rs2497318-?	NR	3E-11	(subset analysis)			Illumina [130052]	N
1305	chr10	94435672	94435673	rs35906730	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q23.33		rs35906730-A	0.740884648	8E-43		0.87733376	[0.86108598-0.89388817]	Illumina [8919992] (imputed)	N
1305	chr10	94435672	94435673	rs35906730	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q23.33	HHEX, IDE	rs35906730-G	0.265	1E-71		1.15	[1.13-1.17]	Affymetrix, Illumina [11800000] (imputed)	N
1305	chr10	94436850	94436851	rs7911264	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q23.33	HHEX, IDE, KIF11	rs7911264-?		5E-7				Illumina [9725440] (imputed)	N
1305	chr10	94436850	94436851	rs7911264	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q23.33	intergenic	rs7911264-C	0.519	3E-8		1.066	[1.035-1.097]	Affymetrix, Illumina [1230000] (imputed)	N
1305	chr10	94441992	94441992	rs745932882	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q23.33	NR	rs745932882-AG	0.545869	7E-22		0.027198	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
1305	chr10	94446040	94446041	rs2488087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.33		rs2488087-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1305	chr10	94450232	94450233	rs9420589	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q23.33	NR	rs9420589-T	0.4345	4E-13		0.001641	[0.0012-0.0021] unit increase	Affymetrix [NR] (imputed)	N
1305	chr10	94453475	94453476	rs11319879	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10q23.33	HHEX	rs11319879-T	0.5168	1E-13		0.02700867	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr10	94453475	94453476	rs11319879	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	10q23.33	HHEX	rs11319879-T	0.5169	9E-11		0.02363669	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr10	94460280	94460281	rs11187138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q23.33		rs11187138-G	NR	4E-42		0.0284	[0.024-0.033] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1305	chr10	94460649	94460650	rs10882099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	10q23.33		rs10882099-C	0.70818	2E-11		0.0309346	[0.022-0.04] unit decrease	Illumina [13466143] (imputed)	N
1305	chr10	94462426	94462427	rs10882101	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q23.33	HHEX, IDE	rs10882101-T	0.5872	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q23.33	NR	rs1111875-C	0.5924	5E-89		0.0923	[0.083-0.101] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q23.33	NR	rs1111875-C	0.549	1E-128		0.0928	[0.085-0.1] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q23.33	HHEX	rs1111875-T	0.4245	6E-39		0.102	[0.086-0.118] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q23.33	HHEX	rs1111875-T	0.4245	3E-26	(EA)	0.1066	[0.087-0.126] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	10q23.33	HHEX-IDE	rs1111875-C	NR	2E-8	(additive model)	1.142	[1.09-1.19]	NR [9288881] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q23.33	HHEX, IDE	rs1111875-C	0.58	3E-19		1.15	[1.11-1.19]	Affymetrix, Illumina [2500000] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	10q23.33	HHEX	rs1111875-C	0.29	2E-8		1.14	[1.09-1.20]	Illumina [6209637] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q23.33	HHEX, IDE	rs1111875-C	NR	7E-13	(female)	1.12	[1.09-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q23.33	HHEX, IDE	rs1111875-C	NR	5E-12	(men)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q23.33	HHEX, IDE	rs1111875-C	0.581455301385325	2E-19		1.11	[1.09-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1305	chr10	94462881	94462882	rs1111875	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	10q23.33	HHEX	rs1111875-C	0.28	7E-12		1.21	[1.15-1.28]	Illumina [482625]	N
1305	chr10	94462881	94462882	rs1111875	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	10q23.33	HHEX	rs1111875-C	0.52	6E-10	(DGI+FUSION+WTCCC)	1.13	[1.09-1.17]	Illumina [315635]	N
1305	chr10	94462881	94462882	rs1111875	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	10q23.33	HHEX	rs1111875-C	0.53	6E-10		1.13	[1.08-1.17]	Affymetrix [386731]	N
1305	chr10	94462881	94462882	rs1111875	17293876	Sladek R	2007-02-11	Nature	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	10q23.33	HHEX	rs1111875-G	0.60	3E-6		1.19	[0.82-1.56]	Illumina [392935]	N
1305	chr10	94463962	94463963	rs11309330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q23.33		rs11309330-G	NR	2E-65		0.1119	[0.099-0.125] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1305	chr10	94464306	94464307	rs12778642	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q23.33	NR	rs12778642-A	0.4347	2E-6	(EA)	1.0610541	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1305	chr10	94464901	94464904	rs200331090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q23.33		rs200331090-A	NR	2E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1305	chr10	94465558	94465559	rs5015480	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Insulin levels in response to oral glucose tolerance test (30 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	10q23.33	HHEX, EXOC6	rs5015480-T	0.447	5E-7		0.048	[0.028-0.068] unit increase	Illumina [at least 81396]	N
1305	chr10	94465558	94465559	rs5015480	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q23.33	HHEX	rs5015480-C	0.57	2E-9	(Obese)	1.18	[1.11-1.23]	NR [NR]	N
1305	chr10	94465558	94465559	rs5015480	20862305	Shu XO	2010-09-16	PLoS Genet	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	10q23.33	HHEX	rs5015480-C	0.17	9E-6		1.17	[1.11-1.24]	Affymetrix [590887]	N
1305	chr10	94465558	94465559	rs5015480	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	10q23.33	HHEX, IDE	rs5015480-C		1E-15		1.18	[1.13-1.23]	Affymetrix, Illumina [2426886] (imputed)	N
1305	chr10	94465558	94465559	rs5015480	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10q23.33	HHEX	rs5015480-C	NR	7E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [2202892] (imputed)	N
1305	chr10	94465558	94465559	rs5015480	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	10q23.33	HHEX	rs5015480-C	0.57	5E-6		1.13	[1.07-1.19]	Affymetrix [393453]	N
1305	chr10	94466438	94466439	rs12219514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q23.33		rs12219514-G	0.875651045	3E-44		0.18967053	[0.16-0.22] unit decrease	Illumina [13429769] (imputed)	N
1305	chr10	94466438	94466439	rs12219514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs12219514-A	0.562748	7E-20				Affymetrix, Illumina [17210439] (imputed)	N
1305	chr10	94466438	94466439	rs12219514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q23.33	NR	rs12219514-A	0.566105	1E-22		0.018984	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1305	chr10	94466438	94466439	rs12219514	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q23.33	NR	rs12219514-G	0.8696	5E-40		0.1666	[0.14-0.19] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1305	chr10	94466438	94466439	rs12219514	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q23.33	HHEX, IDE	rs12219514-A	0.13	5E-39		1.18	1.15-1.21	Illumina [12557761] (imputed)	N
1305	chr10	94466438	94466439	rs12219514	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	10q23.33	HHEX, EXOC6	rs12219514-?	NR	2E-11		0.06911	[0.049-0.089] unit decrease novel	Illumina [6108953] (imputed)	N
1305	chr10	94466494	94466495	rs10882102	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	10q23.33	NR	rs10882102-G		2E-20		1.1		NR [8016731] (imputed)	N
1305	chr10	94466909	94466910	rs11187140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q23.33		rs11187140-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1305	chr10	94467144	94467145	rs11187141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q23.33		rs11187141-T	0.792666	6E-12		0.0229945	[0.016-0.03] unit increase	Illumina [13479924] (imputed)	N
1305	chr10	94467144	94467145	rs11187141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q23.33		rs11187141-T	0.792693098	2E-34		0.14882995	[0.13-0.17] unit decrease	Illumina [13134967] (imputed)	N
1305	chr10	94467144	94467145	rs11187141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q23.33		rs11187141-T	0.792472	2E-11		0.026306	[0.019-0.034] unit increase	Illumina [13479178] (imputed)	N
1305	chr10	94467286	94467287	rs34744311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q23.33		rs34744311-T	NR	9E-49		0.1255	[0.11-0.14] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1305	chr10	94467286	94467287	rs34744311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q23.33		rs34744311-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1305	chr10	94468642	94468643	rs61862780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q23.33		rs61862780-C	NR	1E-28		0.0189	[0.016-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1305	chr10	94468642	94468643	rs61862780	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	10q23.33	HHEX, IDE	rs61862780-T	0.52	1E-14		0.0279	[0.021-0.035] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1305	chr10	94468684	94468685	rs11187142	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	10q23.33	HHEX	rs11187142-T	0.1047	3E-11		0.3312	[0.23-0.43] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1305	chr10	94469979	94469980	rs11187144	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q23.33	NR	rs11187144-T	0.39	3E-15		0.026	[0.02-0.032] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1305	chr10	94469979	94469980	rs11187144	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin disposition index	up to 4,746 European individuals, up to 412 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	10q23.33	HHEX	rs11187144-T	NR	3E-6		0.099	[0.058-0.14] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1305	chr10	94469979	94469980	rs11187144	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	10q23.33	HHEX	rs11187144-T	NR	3E-8		0.12	[0.077-0.163] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1305	chr10	94469979	94469980	rs11187144	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	10q23.33	HHEX	rs11187144-T	NR	3E-8		0.12	[0.079-0.161] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1305	chr10	94473628	94473629	rs7087591	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q23.33	HHEX, IDE	rs7087591-G	NR	6E-20	(Japanese)	1.1866591	[1.14388991203487-1.23102679945342]	Illumina [7521072] (imputed)	N
1305	chr10	94476612	94476621	rs55854702	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q23.33		rs55854702-C	NR	5E-38		0.7778555	[0.748696110700887-0.80815056359397]	Illumina [8919992] (imputed)	N
1305	chr10	94477538	94477539	rs1832886	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q23.33	HHEX, EXOC6	rs1832886-A	0.784	3E-12	(Japanese)	0.031	[0.023-0.039] unit increase	Illumina [6108953] (imputed)	N
1305	chr10	94479106	94479107	rs1112718	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	10q23.33	HHEX	rs1112718-A	NR	2E-17		1.086	NR	Affymetrix, Illumina [8278136] (imputed)	N
1305	chr10	94479106	94479107	rs1112718	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q23.33	HHEX, IDE	rs1112718-G	0.404182	4E-23		0.025684	[0.021-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1305	chr10	94479106	94479107	rs1112718	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	10q23.33	Y_RNA	rs1112718-G	0.405782	9E-18		0.10158544	[0.078-0.125] unit decrease	Affymetrix [7288503] (imputed)	N
1305	chr10	94479106	94479107	rs1112718	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q23.33	HHEX, IDE	rs1112718-A	0.5984	5E-7		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1305	chr10	94481916	94481917	rs7923837	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	10q23.33	NR	rs7923837-A	0.367	5E-9		0.03527378	[0.023-0.047] unit increase	NR [1977400] (imputed)	N
1305	chr10	94481916	94481917	rs7923837	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q23.33	HHEX, EXOC6	rs7923837-A	0.39	2E-9		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
1305	chr10	94481916	94481917	rs7923837	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q23.33	NR	rs7923837-?		7E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1305	chr10	94481916	94481917	rs7923837	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	10q23.33	HHEX	rs7923837-G	0.62	4E-17		1.11		Illumina [161311]	N
1305	chr10	94481916	94481917	rs7923837	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	10q23.33	HHEX	rs7923837-G	NR	5E-9		1.1	[1.08-1.11]	Illumina [465434]	N
1305	chr10	94482075	94482076	rs7923866	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q23.33	HHEX	rs7923866-T	0.378774900654434	9E-40		0.0972	[0.083-0.112] unit decrease	NR [5035015] (imputed)	N
1305	chr10	94485210	94485211	rs2497306	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	10q23.33	HHEX	rs2497306-C	0.49	5E-9		0.04	[0.02-0.06] umol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1305	chr10	94490173	94490174	rs2488075	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	10q23.33	HHEX	rs2488075-?	NR	2E-15				NR [NR]	N
1305	chr10	94492715	94492716	rs2497304	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	10q23.33	Y_RNA	rs2497304-T	NR	9E-7		4.922	NR z score decrease	Illumina [8978282] (imputed)	N
1305	chr10	94492715	94492716	rs2497304	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	10q23.33	NR	rs2497304-T	0.48	8E-13		0.026933711	[0.02-0.034] unit decrease	NR [1977400] (imputed)	N
1305	chr10	94498435	94498436	rs4933236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q23.33	NR	rs4933236-C	NR	3E-11		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1305	chr10	94498435	94498436	rs4933236	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	10q23.33	NR	rs4933236-?	NR	1E-8				Affymetrix [up to 8270000] (imputed)	N
1305	chr10	94502243	94502244	rs11187157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q23.33	NR	rs11187157-C	NR	4E-10		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1305	chr10	94502243	94502244	rs11187157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q23.33	NR	rs11187157-C	NR	2E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1305	chr10	94502243	94502244	rs11187157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q23.33	NR	rs11187157-C	NR	1E-10		0.0167	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1305	chr10	94502243	94502244	rs11187157	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q23.33	NR	rs11187157-?	NR	2E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1306	chr10	94508054	94508055	rs9419746	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs9419746-C	0.787375	2E-9		0.0294304	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1306	chr10	94508054	94508055	rs9419746	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs9419746-C	0.787375	6E-9		0.0285046	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1306	chr10	94515202	94515203	rs34664889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q23.33		rs34664889-A	0.159405	1E-12		0.021522839	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1306	chr10	94515202	94515203	rs34664889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q23.33	NR	rs34664889-A	0.159961	2E-15		0.020387	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1306	chr10	94516007	94516008	rs11187166	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q23.33		rs11187166-T	0.19902	3E-8		0.1757	[0.11-0.24] unit increase	Illumina [18238311] (imputed)	N
1306	chr10	94519696	94519697	rs4565815	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	10q23.33		rs4565815-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1306	chr10	94519696	94519697	rs4565815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q23.33		rs4565815-T	0.152748	2E-16		0.025403185	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1306	chr10	94519696	94519697	rs4565815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q23.33		rs4565815-T	0.152749	1E-21		0.029393384	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1306	chr10	94521414	94521415	rs11187169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs11187169-G	0.141736	2E-13				Affymetrix, Illumina [23472807] (imputed)	N
1306	chr10	94522437	94522438	rs35039517	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q23.33		rs35039517-A	0.20303	2E-9		0.1894	[0.13-0.25] unit increase	Illumina [18238311] (imputed)	N
1306	chr10	94533176	94533176	rs563557217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs563557217-G,rs563557217-G	0.530919	1E-9		0.0245193	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1306	chr10	94533176	94533176	rs563557217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs563557217-G,rs563557217-G	0.530919	1E-9		0.0245193	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1306	chr10	94533176	94533176	rs563557217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	10q23.33		rs563557217-G,rs563557217-G	0.530919	3E-9		0.024348	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1306	chr10	94533176	94533176	rs563557217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	10q23.33		rs563557217-G,rs563557217-G	0.530919	3E-9		0.024348	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1306	chr10	94537489	94537490	rs60320343	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	10q23.33	HHEX, EXOC6	rs60320343-T	0.11	7E-6		0.3	unit increase	Illumina [5600000] (imputed)	N
1306	chr10	94542286	94542287	rs7923888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q23.33		rs7923888-T	0.322731	1E-14		0.018280324	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1306	chr10	94564610	94564611	rs117582141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q23.33		rs117582141-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1306	chr10	94564610	94564611	rs117582141	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q23.33	NR	rs117582141-?	NR	1E-6	(AA)	1.4321	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1306	chr10	94577903	94577904	rs113206698	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (diclofenac)	67 European ancestry cases, 10,588 European ancestry controls	NA	10q23.33		rs113206698-?	NR	6E-7		3.79	2.25-6.39	Illumina [505740] (imputed)	N
1307	chr10	94658206	94658207	rs34773007	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q23.33	IDE, HHEX	rs34773007-A	0.040	2E-14	(Japanese)	1.28	[1.20-1.37]	Illumina [7521072] (imputed)	N
1307	chr10	94670559	94670560	rs6583848	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q23.33		rs6583848-C	0.32	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
1307	chr10	94739493	94739494	rs1536329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q23.33		rs1536329-G	0.32	9E-16		8.04	z score increase	Affymetrix [9061022] (imputed)	N
1307	chr10	94739493	94739494	rs1536329	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q23.33	NR	rs1536329-G	0.3356	2E-8				NR [9056863] (imputed)	N
1308	chr10	94771894	94771895	rs4919044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q23.33	NR	rs4919044-C	NR	4E-10		0.0266	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94771894	94771895	rs4919044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	10q23.33	NR	rs4919044-C	NR	2E-9		0.0265	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94771894	94771895	rs4919044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q23.33	NR	rs4919044-C	NR	4E-9		0.0251	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94771894	94771895	rs4919044	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q23.33	EXOC6	rs4919044-T	0.915	4E-6		0.053	[0.029-0.077] unit increase	Affymetrix [7947838] (imputed)	N
1308	chr10	94776478	94776479	rs12413181	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	10q23.33	NR	rs12413181-A		2E-11		0.17	[0.11-0.23] unit increase	NR [NR]	N
1308	chr10	94776478	94776479	rs12413181	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	10q23.33	EXOC6	rs12413181-?	NR	8E-12		0.1525	[0.11-0.2] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1308	chr10	94782734	94782735	rs835259	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	10q23.33		rs835259-?	NR	4E-8		5.501026	z score decrease	Affymetrix [NR] (imputed)	N
1308	chr10	94782873	94782876	rs10531957	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	10q23.33	EXOC6	rs10531957-G	49.54	5E-10	(additive)	0.97	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1308	chr10	94782873	94782876	rs10531957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q23.33	EXOC6	rs10531957-G	0.477942	8E-12		0.01549139	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr10	94783674	94783675	rs79117755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	10q23.33		rs79117755-A	0.652884	1E-16		0.0350189	[0.027-0.043] unit decrease	Illumina [13471903] (imputed)	N
1308	chr10	94783776	94783777	rs7895716	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q23.33	EXOC6	rs7895716-?		2E-10		0.0289	[0.02-0.038] unit increase	Illumina [31500000] (imputed)	N
1308	chr10	94783776	94783777	rs7895716	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	10q23.33	EXOC6	rs7895716-?	NR	1E-10		0.0353	[0.025-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1308	chr10	94786955	94786956	rs4568938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	10q23.33		rs4568938-T	0.654056	2E-10		0.0254355	[0.018-0.033] unit increase	Illumina [13476323] (imputed)	N
1308	chr10	94786955	94786956	rs4568938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	10q23.33		rs4568938-T	0.652812	9E-11		0.0320809	[0.022-0.042] unit increase	Illumina [13465896] (imputed)	N
1308	chr10	94795975	94795975	rs570762793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q23.33	EXOC6	rs570762793-CA	0.37093	2E-13		0.01719296	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	5E-10		0.0258776	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	8E-11		0.0270012	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	1E-11		0.0281585	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	4E-11		0.027637	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	5E-10		0.0258555	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	7E-12		0.028633	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	5E-10		0.0258548	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	8E-10		0.0255396	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	1E-11		0.0282617	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	2E-11		0.0280108	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	5E-10		0.0258192	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	4E-11		0.0275236	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs535286942-A	0.624419	2E-10		0.0266733	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797201	94797201	rs535286942	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	10q23.33	EXOC6	rs535286942-AT	0.374794	4E-8		0.037682	[0.024-0.051] unit decrease	Affymetrix [9463307] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-10		0.0270052	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-11		0.02739	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	5E-10		0.0260431	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-12		0.0286288	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596181	4E-9		0.0245137	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596181	2E-9		0.0251196	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	2E-9		0.0254085	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-9		0.0256316	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-9		0.0247809	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-12		0.028781	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596181	1E-9		0.0251897	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	8E-12		0.0278472	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	6E-12		0.0280076	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	2E-11		0.0281756	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-11		0.0273616	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	3E-9		0.0250446	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	4E-11		0.0276239	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-9		0.0255974	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	6E-12		0.0284955	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-10		0.0269481	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	7E-11		0.027158	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	2E-9		0.0253711	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	3E-12		0.0286381	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-9		0.0256699	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94797972	94797973	rs2478236	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2478236-G	0.596209	1E-11		0.0279672	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94805664	94805665	rs2486681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs2486681-G	0.596583	3E-8		0.0228673	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1308	chr10	94809798	94809799	rs835278	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	10q23.33	EXOC6	rs835278-?	NR	1E-9		0.02743	[0.019-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1308	chr10	94810664	94810665	rs856534	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q23.33	NR	rs856534-A	0.386748	1E-22		0.0105641	[0.0083-0.0129] unit increase	Affymetrix [16582621] (imputed)	N
1308	chr10	94810664	94810665	rs856534	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q23.33	NR	rs856534-A	0.386748	7E-19		0.0101624	[0.0077-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
1308	chr10	94810664	94810665	rs856534	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q23.33	EXOC6, CYP26C1	rs856534-G	0.4342	1E-9		6.077	NR z score increase	Illumina [26237160] (imputed)	N
1308	chr10	94812253	94812254	rs78627331	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q23.33	IDE, HHEX	rs78627331-C	0.032	2E-14	(Japanese)	1.33	[1.24-1.44]	Illumina [7521072] (imputed)	N
1308	chr10	94814710	94814714	rs146234588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q23.33		rs146234588-T	NR	1E-23		0.0212	[0.017-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1308	chr10	94823342	94823343	rs12263369	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q23.33	CYP26C1	rs12263369-C	0.40937	6E-12		0.0137492	[0.0098-0.0177] unit increase	Affymetrix [NR] (imputed)	N
1308	chr10	94823595	94823596	rs4919594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q23.33		rs4919594-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1308	chr10	94826646	94826647	rs117929802	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	EXOC6, CYP26C1, CYP26A1	rs117929802-G	0.972102	3E-8	(70 ms)	0.0966275	[0.063-0.131] unit decrease	Affymetrix [10000000] (imputed)	N
1308	chr10	94831512	94831513	rs4411227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	10q23.33		rs4411227-G	0.686355	2E-8		0.0215632	[0.014-0.029] unit decrease	Illumina [13476165] (imputed)	N
1308	chr10	94831512	94831513	rs4411227	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q23.33	CYP26C1, CYP26A1	rs4411227-?		5E-18		0.0344	[0.027-0.042] unit decrease	Illumina [31500000] (imputed)	N
1308	chr10	94831512	94831513	rs4411227	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	10q23.33	CYP26C1, CYP26A1	rs4411227-?	NR	4E-16		0.0369	[0.028-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	3E-15		0.0216	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	2E-11		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	1E-14		0.0211	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	2E-15		0.0217	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	1E-16		0.0226	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	4E-11		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	3E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	6E-13		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	4E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q23.33	NR	rs11812460-A	NR	2E-17		0.0233	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94832127	94832128	rs11812460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	10q23.33	NR	rs11812460-G	0.326772	3E-11		0.026439	[0.019-0.034] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549863	1E-13		0.0288206	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	5E-11		0.0258114	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	2E-11		0.026998	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	4E-11		0.0261058	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	5E-11		0.0263495	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	7E-11		0.026206	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	2E-13		0.0295786	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	2E-10		0.0256712	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	1E-11		0.0275788	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	2E-11		0.0271268	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	1E-11		0.0275346	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	1E-10		0.0259604	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	8E-11		0.0260341	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549854	1E-10		0.0257216	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549904	2E-12		0.0283993	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	5E-12		0.027632	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	4E-10		0.0247737	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	3E-11		0.026122	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	1E-10		0.0248782	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	9E-10		0.0245501	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	3E-12		0.0274876	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	4E-13		0.0269677	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	5E-11		0.0259374	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	1E-12		0.0277296	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	8E-13		0.0268338	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	10q23.33		rs2068888-G	0.549899	2E-12		0.0259859	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	2E-53		0.0312	[0.027-0.035] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	2E-12		0.0138	[0.0099-0.0177] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	2E-47		0.0287	[0.025-0.033] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	3E-16		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	2E-31		0.0189	[0.016-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	1E-32		0.0228	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	0.619852	4E-15		0.0267356	[0.02-0.033] unit decrease	Illumina [13478928] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q23.33		rs2068888-A	NR	2E-9		0.0294	[0.02-0.039] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q23.33		rs2068888-A	NR	7E-18		0.0417	[0.032-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q23.33		rs2068888-A	0.620540742	2E-10		0.060366306	[0.042-0.079] unit decrease	Illumina [13429980] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	4E-18		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q23.33		rs2068888-A	NR	1E-13		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q23.33		rs2068888-G	0.55	3E-10				Affymetrix [10369434] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.450494	8E-26		0.023833737	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.45048	1E-23		0.0227386	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.450485	2E-9		0.013409926	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-A	0.487453	3E-35				Affymetrix, Illumina [24588908] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q23.33	NR	rs2068888-A	0.452695	3E-29		0.020697	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10q23.33	NR	rs2068888-G	0.549363	2E-46		0.0275689	[0.024-0.031] unit increase	Affymetrix [15000001]	N
1308	chr10	94839641	94839642	rs2068888	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10q23.33		rs2068888-?	NR	3E-8		0.0112586	[0.0073-0.0153] unit increase	NR [6912294] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-G	0.549265	4E-57		0.0318472	[0.028-0.036] unit increase	Affymetrix [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-G	0.549301	5E-20		0.0191878	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-G	0.549555	1E-23		0.0191975	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-G	0.549197	7E-31		0.0241457	[0.02-0.028] unit increase	Affymetrix [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q23.33	NIP7P1	rs2068888-?	NR	6E-32		0.0303	[0.026-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q23.33	NR	rs2068888-A	0.450001	2E-40		0.0111491	[0.0095-0.0128] unit increase	Affymetrix [16582909] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q23.33	NR	rs2068888-A	0.451225	2E-26		0.0130615	[0.011-0.015] unit increase	Affymetrix [16585854] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q23.33	NR	rs2068888-A	0.450001	2E-22		0.00951181	[0.0077-0.0113] unit increase	Affymetrix [16582965] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q23.33	NR	rs2068888-A	0.451225	8E-15		0.0114674	[0.0087-0.0143] unit increase	Affymetrix [16585866] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q23.33	NR	rs2068888-G	0.550337	5E-17		0.016791	[0.013-0.021] unit increase	NR [NR]	N
1308	chr10	94839641	94839642	rs2068888	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	10q23.33	CYP26A1	rs2068888-G	0.55	1E-9	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	10q23.33	CYP26A1	rs2068888-A	NR	3E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.4515	5E-10		0.0124266	[0.0085-0.0164] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q23.33	CYP26A1	rs2068888-A	0.491	4E-12		0.0024	[0.0018-0.003] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q23.33	CYP26A1	rs2068888-A	0.4907	1E-21		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q23.33	CYP26A1	rs2068888-A	0.4527	9E-20		0.0026	[0.002-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	10q23.33	CYP26A1	rs2068888-A	0.450113	4E-10		0.035113055	[0.024-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	10q23.33		rs2068888-A	0.4358	1E-9		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	10q23.33		rs2068888-A	0.4625	5E-8		0.0062	[0.004-0.0084] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q23.33	intergenic	rs2068888-A	0.4268	3E-28		0.0296	[0.024-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q23.33	intergenic	rs2068888-A	0.4266	7E-17		0.0222	[0.017-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	NR	5E-16		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	0.536	6E-12	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	NR	1E-6		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	NR	2E-6		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	NR	2E-13		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q23.33	NR	rs2068888-G	0.536	5E-11	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs2068888-?	NR	1E-11		0.02961	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	10q23.33	CYP26A1	rs2068888-A	0.491	3E-12	(Trans-ethnic initial)	0.0241	[0.017-0.031] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.4509	9E-11		0.0238492	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.4509	9E-11		0.02371978	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	10q23.33	CYP26A1	rs2068888-A	0.45	2E-11		0.024	[NR] mg/dL decrease	NR [NR] (imputed)	N
1308	chr10	94839641	94839642	rs2068888	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	10q23.33	CYP26A1	rs2068888-A	0.47	2E-8		2.28	[1.54-3.02] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	5E-12		0.0257744	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	5E-12		0.0251094	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549251	7E-10		0.0246279	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q23.33		rs4418728-G	0.54926	9E-11		0.0246757	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	4E-12		0.0259467	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	1E-10		0.0235402	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549251	4E-10		0.0249272	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	4E-12		0.0252891	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	3E-10		0.0234778	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	2E-12		0.0254995	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549299	6E-10		0.0251142	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	7E-15		0.0285313	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs4418728-G	0.549297	2E-14		0.0278828	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q23.33		rs4418728-T	NR	1E-31		0.0222	[0.018-0.026] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q23.33	CYP26A1	rs4418728-G	0.548631	3E-29		0.00553866	[0.0045-0.0066] unit increase	Affymetrix [13995440] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	10q23.33	CYP26A1	rs4418728-G	0.550788	7E-10		0.014384	[0.0098-0.019] unit increase	Affymetrix [19400838] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	10q23.33		rs4418728-G	0.548312	1E-9		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q23.33	NIP7P1	rs4418728-?	NR	1E-32		0.0313	[0.027-0.036] unit decrease	Affymetrix [5701386] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	3E-25				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	1E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	7E-27				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	4E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	8E-7	(EA)	0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	8E-19		0.015	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	1E-11	(Asian)	0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	7E-12	(Asian)	0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	2E-18		0.018	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	9E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	6E-11				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	5E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	7E-6		0.677	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	4E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	4E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	1E-16				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	6E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	6E-17				Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	3E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	2E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	9E-9		0.005	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	4E-6	(AA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q23.33	CYP26A1, MYOF	rs4418728-T	NR	2E-9		0.005572	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	10q23.33	NR	rs4418728-T	0.4534	1E-15				Affymetrix, Illumina [at least 2500000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10q23.33	CYP26A1	rs4418728-T	0.539	1E-8		0.345	[0.16-0.53] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q23.33	NR	rs4418728-T	0.62	3E-6	(East Asian)	0.3198	[0.19-0.45] unit decrease	Illumina [6200000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q23.33	NR	rs4418728-T	0.62	1E-7	(East Asian)	0.2536	[0.16-0.35] unit decrease	Illumina [6200000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q23.33	NR	rs4418728-T	0.6242	2E-8		0.1975	[0.13-0.27] unit decrease	Illumina [6200000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q23.33	intergenic	rs4418728-T	0.4271	2E-9		0.016	[0.011-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1308	chr10	94839723	94839724	rs4418728	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs4418728-?	NR	4E-8		0.02376	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1308	chr10	94841106	94841107	rs7905939	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q23.33	NR	rs7905939-G	NR	2E-9		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94842045	94842046	rs35451331	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10q23.33	CYP26A1	rs35451331-A	0.1574	3E-9		0.0067	[0.0045-0.0089] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1308	chr10	94842212	94842213	rs10882140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q23.33		rs10882140-G	0.466582	3E-10		0.0250013	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94842212	94842213	rs10882140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs10882140-G	0.466582	2E-11		0.026064	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1308	chr10	94842212	94842213	rs10882140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	10q23.33		rs10882140-G	0.466538	2E-11		0.0257039	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1308	chr10	94842212	94842213	rs10882140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q23.33		rs10882140-G	0.46657	8E-10		0.0225495	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	3E-14		0.0196	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	3E-12		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	8E-15		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	3E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	2E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	2E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	1E-11		0.0174	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	5E-13		0.0202	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	2E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	5E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q23.33	NR	rs10786068-G	NR	3E-16		0.0211	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr10	94842476	94842477	rs10786068	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	10q23.33	NR	rs10786068-?	NR	4E-8	(Clostridium_cellulolyticum)	1.908517	[1.68-2.14]	Illumina [5293637] (imputed)	N
1308	chr10	94845035	94845036	rs913423	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	10q23.33	CYP26A1	rs913423-A	0.54	8E-8	(EA)	0.0043	[0.0027-0.0059] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1308	chr10	94845545	94845546	rs10786069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	10q23.33		rs10786069-C	0.467629	4E-10		0.0241848	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1308	chr10	94866289	94866290	rs2149108	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q23.33	CYP26A1	rs2149108-T	0.4	4E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1308	chr10	94881287	94881288	rs12778515	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12778515-T	0.573116	1E-9		0.0566508	[0.039-0.075] increase	Affymetrix [11014269] (imputed)	N
1308	chr10	94891849	94891850	rs72815139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.33		rs72815139-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1309	chr10	94921717	94921718	rs6583866	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q23.33	CYP26A1	rs6583866-T	0.457792	2E-13		0.013657	[0.01-0.017] unit increase	NR [13737936] (imputed)	N
1309	chr10	94924323	94924324	rs10882165	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	10q23.33	CYP26A1	rs10882165-T	0.42	1E-11		0.107	[0.076-0.138] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1309	chr10	94929115	94929116	rs10882167	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	10q23.33	CYP26A1, MYOF	rs10882167-T	NR	1E-9		0.0436	unit increase	Illumina [15409056] (imputed)	N
1309	chr10	94936622	94936623	rs7078201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q23.33		rs7078201-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1309	chr10	94942422	94942423	rs61861119	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	10q23.33	MYOF, XRCC6P1	rs61861119-A	NR	3E-9		1.098901	[1.05-1.14]	Affymetrix [up to 40000000] (imputed)	N
1309	chr10	94943012	94943013	rs4918865	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Glaucoma (primary open-angle)	3,071 European ancestry cases, 6,750 European ancestry controls	3,853 cases, 33,480 controls	10q23.33	MYOF, XRCC6P1, CYP26A1, CYP26C1, EXOC6	rs4918865-C	NR	2E-6		1.119	[1.08-1.16]	Illumina [NR] (imputed)	N
1309	chr10	94943889	94943890	rs10882172	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q23.33	NR	rs10882172-A	0.5958	4E-9		0.0833	[0.055-0.111] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1309	chr10	94948933	94948934	rs72815176	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10q23.33	Intergenic	rs72815176-T	NR	2E-6		0.078837	[0.046-0.111] unit increase	Illumina [13520550] (imputed)	N
1309	chr10	94950272	94950273	rs12778014	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q23.33	EXOC6, CYP26C1, CYP26A1, PDE6C, FRA10AC1	rs12778014-?		3E-23				Affymetrix, Illumina [NR] (imputed)	N
1309	chr10	94950712	94950713	rs17108260	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	10q23.33	CYP26A1	rs17108260-A	0.57	3E-11		0.00605	[0.0043-0.0078] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1309	chr10	94951487	94951488	rs10882177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q23.33		rs10882177-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1309	chr10	94953257	94953258	rs17382981	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs17382981-T	0.4172	3E-10		6.314	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1309	chr10	94958905	94958906	rs4989187	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q23.33		rs4989187-?	NR	8E-15		0.0157094	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1309	chr10	94960074	94960075	rs55684140	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q23.33	NR	rs55684140-T	0.5374	7E-9	(EA)	0.0869	[0.058-0.116] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1309	chr10	94963390	94963391	rs72815193	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs72815193-A	0.57	9E-16		0.007	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1309	chr10	94963390	94963391	rs72815193	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Open-angle glaucoma and vertical cup-disc ratio	3,071 European ancestry open-angle glaucoma cases, 6,750 European ancestry controls, 23,899 European ancestry individuals with vertical cup to disc ratio data, 8,373 Asian ancestry individuals with vertical cup to disc ratio data	NA	10q23.33	MYOF, XRCC6P1	rs72815193-G	NR	6E-10				Illumina [NR] (imputed)	N
1309	chr10	94996521	94996522	rs1927465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q23.33		rs1927465-T	NR	5E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1309	chr10	94997874	94997875	rs7916961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.33		rs7916961-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1309	chr10	94998107	94998108	rs117691857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q23.33	NR	rs117691857-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1309	chr10	95009179	95009180	rs565236700	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q23.33	MYOF	rs565236700-C	0.024	6E-19		1.23	[1.17-1.29]	Affymetrix, Illumina [11800000] (imputed)	N
1309	chr10	95021365	95021366	rs148679606	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	10q23.33	NR	rs148679606-C	0.009	5E-7		0.25	[0.15-0.34] unit increase	Illumina [6374524] (imputed)	N
1310	chr10	95039396	95039397	rs1222926	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs1222926-C	0.3592	9E-27		0.1543	[0.13-0.18] unit increase	Affymetrix [~ 11900000] (imputed)	N
1310	chr10	95041903	95041904	rs2797560	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	10q23.33	MYOF	rs2797560-?	NR	8E-9		0.0771	[0.051-0.103] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1310	chr10	95044788	95044789	rs1746483	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	10q23.33	MYOF	rs1746483-C	0.543	4E-11		0.085	[0.06-0.11] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1310	chr10	95045109	95045110	rs2797570	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	10q23.33	NR	rs2797570-G		7E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
1310	chr10	95045109	95045110	rs2797570	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q23.33	CYP26A1, MYOF	rs2797570-G	0.5469	1E-36		0.1736	[0.15-0.2] unit increase	Affymetrix [~ 11900000] (imputed)	N
1310	chr10	95049397	95049399	rs66479974	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	10q23.33	CYP26A1, MYOF	rs66479974-?	NR	5E-11		0.09	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1310	chr10	95052020	95052021	rs2761311	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q23.33	MYOF	rs2761311-C	0.428103	1E-8		0.0121175	[0.008-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
1310	chr10	95067733	95067734	rs182911102	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	10q23.33	FER1L3	rs182911102-T	0.985	3E-8	(YKL-40)	64.832	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
1310	chr10	95072535	95072536	rs787665	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	10q23.33	NR	rs787665-?	NR	9E-6	(genus_Desulfovibrio)	0.9299066	[0.55-1.31] unit increase	Affymetrix [210924]	N
1310	chr10	95077621	95077622	rs4917735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q23.33	CEP55	rs4917735-?	NR	9E-7	(uric acid)	0.19398347	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1310	chr10	95091878	95091879	rs1609574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q23.33	NR	rs1609574-C	NR	2E-9		0.0379	[0.026-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1310	chr10	95136612	95136613	rs61866237	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	10q23.33		rs61866237-G	0.039632	9E-6		0.076009	[0.042-0.11] unit decrease	Affymetrix [15580782] (imputed)	N
1310	chr10	95139581	95139582	rs186247051	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	10q23.33	NR	rs186247051-A	0.01284	5E-6		0.6059	[0.35-0.87] unit decrease	Illumina [10677593] (imputed)	N
1311	chr10	95256199	95256200	rs3740373	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	10q23.33	CEP55	rs3740373-?		7E-6				Illumina [7405822] (imputed)	N
1311	chr10	95273934	95273935	rs10748604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.33		rs10748604-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1311	chr10	95274889	95274890	rs10882258	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10q23.33	NR	rs10882258-?	NR	6E-6				Illumina [at least 7383741] (imputed)	N
1312	chr10	95292187	95292189	rs140936696	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q23.33		rs140936696-CAA	NR	5E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1312	chr10	95292187	95292189	rs140936696	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q23.33	intergenic	rs140936696-CAA	0.18	4E-8	(EA)	1.04	[1.02-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1312	chr10	95308822	95308823	rs78233181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q23.33	NR	rs78233181-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs10786114-C	0.124328	3E-9		0.0350102	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q23.33		rs10786114-C	0.124328	2E-8		0.0338805	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q23.33		rs10786114-C	0.124328	4E-8		0.0329668	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs10786114-C	0.124328	3E-9		0.0347381	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs10786114-C	0.124328	4E-9		0.0348224	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95309021	95309022	rs10786114	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q23.33	FFAR4	rs10786114-C	0.125151	2E-16		0.0237884	[0.018-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1312	chr10	95310538	95310539	rs7091291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q23.33		rs7091291-T	0.838373	1E-10		0.0343168	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95310538	95310539	rs7091291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q23.33		rs7091291-T	0.838373	2E-8		0.0303844	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95312134	95312135	rs79561207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q23.33	FFAR4	rs79561207-A	NR	7E-11		0.0307065	[0.021-0.04] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95312134	95312135	rs79561207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs79561207-A	NR	7E-11		0.0307245	[0.021-0.04] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95315998	95315999	rs142973438	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.33	Intergenic	rs142973438-A	0.977	3E-6	(AA)	0.049	unit increase	Illumina [NR] (imputed)	N
1312	chr10	95316036	95316037	rs113344423	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q23.33	FFAR4	rs113344423-G	0.939822	2E-23		0.0429482	[0.035-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1312	chr10	95317393	95317394	rs143988467	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.33	Intergenic	rs143988467-G	0.977	3E-6	(AA)	0.049	unit increase	Illumina [NR] (imputed)	N
1312	chr10	95322136	95322137	rs6583899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs6583899-G	0.800959	2E-10		0.0318799	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95322136	95322137	rs6583899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs6583899-G	0.800959	3E-9		0.029632	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1312	chr10	95322136	95322137	rs6583899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs6583899-G	0.800959	3E-8		0.0284209	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1312	chr10	95322136	95322137	rs6583899	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs6583899-G	0.800959	3E-10		0.031593	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1312	chr10	95337938	95337939	rs12243124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q23.33	FFAR4	rs12243124-C	NR	1E-9		0.0208856	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95337938	95337939	rs12243124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs12243124-C	NR	7E-10		0.0211963	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886038	2E-10		0.0403976	[0.028-0.053] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	1E-11		0.0418027	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	1E-10		0.0400429	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886038	2E-9		0.0380227	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	8E-11		0.0403999	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	2E-10		0.0394088	[0.027-0.052] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886038	2E-11		0.0421596	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	2E-12		0.0429192	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886077	5E-9		0.0365902	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886038	1E-11		0.0424849	[0.03-0.055] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q23.33		rs7091593-A	0.886075	4E-12		0.0425394	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q23.33	FFAR4	rs7091593-T	NR	1E-10		0.0286489	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95342771	95342772	rs7091593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs7091593-T	NR	1E-10		0.0286979	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95346066	95346067	rs10882271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs10882271-A	NR	1E-14		0.024671	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95346339	95346340	rs11187533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q23.33	FFAR4	rs11187533-T	NR	8E-15		0.0248023	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1312	chr10	95346339	95346340	rs11187533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs11187533-T	NR	2E-10		0.0204057	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1312	chr10	95346427	95346428	rs12241416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q23.33	FFAR4	rs12241416-A	NR	7E-13		0.0231336	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
1312	chr10	95346427	95346428	rs12241416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q23.33	NR	rs12241416-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1312	chr10	95346427	95346428	rs12241416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q23.33		rs12241416-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1312	chr10	95346804	95346805	rs11187537	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q23.33	NR	rs11187537-C	0.26	3E-12		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1312	chr10	95346804	95346805	rs11187537	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q23.33	NR	rs11187537-C	0.26	5E-8				Affymetrix [2446094] (imputed)	N
1312	chr10	95346804	95346805	rs11187537	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q23.33	NR	rs11187537-C	0.2633	2E-15		0.0163	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1312	chr10	95346804	95346805	rs11187537	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q23.33	NA	rs11187537-C	0.2632	2E-10		0.013	[0.0091-0.0169] unit increase	NR [~ 27400000] (imputed)	N
1312	chr10	95346804	95346805	rs11187537	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q23.33	NR	rs11187537-C	0.2632	2E-10		0.013	[0.0091-0.0169] unit increase	NR [~ 27400000] (imputed)	N
1312	chr10	95346878	95346879	rs11187538	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.33		rs11187538-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1312	chr10	95348181	95348182	rs10882272	21878437	Mondul AM	2011-08-30	Hum Mol Genet	Genome-wide association study of circulating retinol levels.	Retinol levels	5,006 European ancestry individuals	1,124 European ancestry individuals, 3,764 individuals	10q23.33	RBP4	rs10882272-C	0.35	7E-15		0.03	[0.02-0.04] ug/L decrease	Illumina [562105]	N
1312	chr10	95348904	95348905	rs10882273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q23.33	FFAR4	rs10882273-C	0.383318	2E-9		0.013841178	[0.0093-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr10	95356785	95356786	rs56057449	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.33	RBP4	rs56057449-T	0.89875	1E-7	(RBP4, 5482_61_3)	0.21615252	[0.14-0.3] unit increase	Illumina [> 1000000] (imputed)	N
1312	chr10	95360026	95360027	rs36014035	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q23.33	RBP4	rs36014035-A	0.64328125	7E-9	(RBP4, 7831_39_3)	0.147176	[0.097-0.197] unit increase	Illumina [> 1000000] (imputed)	N
1312	chr10	95360963	95360964	rs10882283	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	10q23.33	RBP4	rs10882283-C	0.377	4E-8		0.023	[0.015-0.031] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
1312	chr10	95384151	95384152	rs7095788	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	10q23.33	PDE6C	rs7095788-T	0.3538	2E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1312	chr10	95386206	95386207	rs2785137	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	10q23.33	PDE6C	rs2785137-G	0.649	1E-6		0.0147	[0.0088-0.0206] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1312	chr10	95386206	95386207	rs2785137	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	10q23.33	PDE6C	rs2785137-G	0.649	5E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1312	chr10	95392584	95392585	rs640090	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	10q23.33	NR	rs640090-C	0.0715	5E-7		0.55	[0.33-0.76] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
1312	chr10	95420384	95420385	rs7091068	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	10q23.33	NR	rs7091068-?	NR	4E-6		0.0411	[0.024-0.059] unit increase	Illumina [at least 560000] (imputed)	N
1313	chr10	95436603	95436604	rs140546855	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q23.33	NR	rs140546855-?	NR	7E-9				Illumina [7760689] (imputed)	N
1313	chr10	95463025	95463026	rs116953792	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	10q23.33	PDE6C, FRA10AC1, LGI1	rs116953792-T	0.03	7E-6		0.75	[0.42-1.08] unit decrease	Illumina [8454933] (imputed)	N
1313	chr10	95463025	95463026	rs116953792	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in mild cognitive impairment	581 European ancestry MCI dementia cases	NA	10q23.33	PDE6C, FRA10AC1, LGI1	rs116953792-T	0.03	3E-7		1.29	[0.8-1.78] unit decrease	Illumina [8448490] (imputed)	N
1313	chr10	95463025	95463026	rs116953792	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	10q23.33	FRA10AC1	rs116953792-G	0.01	8E-11		0.2395	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1313	chr10	95475353	95475354	rs79105493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q23.33	Intergenic	rs79105493-C	0.998	3E-6	(AA)	0.254	unit increase	Illumina [NR] (imputed)	N
1313	chr10	95477349	95477350	rs59824868	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	10q23.33	NR	rs59824868-A	NR	5E-6	(phenotype 3)	2.12	[NR]	Illumina [> 8000000] (imputed)	N
1313	chr10	95508552	95508553	rs75953396	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to perphenazine in schizophrenia	193 Han Chinese ancestry cases	NA	10q23.33	LGI1	rs75953396-A	NR	5E-6		16.3291	[9.52-23.13] unit increase	Illumina [6097251] (imputed)	N
1313	chr10	95515514	95515515	rs4919491	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x carrot consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	10q23.33		rs4919491-G	NR	6E-6		0.2113	[0.12-0.3] unit increase	Illumina [285387]	N
1314	chr10	95659957	95659958	rs146091982	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	10q23.33	SLC35G1	rs146091982-A	0.95	1E-9	(AA)			Illumina [NR] (imputed)	N
1315	chr10	95725880	95725881	rs11187742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q23.33		rs11187742-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1315	chr10	95745401	95745401	rs71031554	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q23.33		rs71031554-C	0.72171	2E-9		0.0427419	[0.028-0.058] increase	Affymetrix [NR]	N
1315	chr10	95752775	95752776	rs11599672	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q23.33		rs11599672-T	0.720765	3E-9		0.0481219	[0.032-0.064] increase	Affymetrix [NR]	N
1315	chr10	95754810	95754811	rs77497030	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10q23.33		rs77497030-?	NR	2E-6		0.9427744	[0.55-1.33] unit decrease	Illumina [9842460] (imputed)	N
1315	chr10	95756499	95756500	rs1223583	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q23.33	PLCE1	rs1223583-A	0.516	2E-6		0.026	[0.014-0.038] unit increase	Affymetrix [7947838] (imputed)	N
1315	chr10	95764615	95764616	rs1223585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q23.33		rs1223585-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1315	chr10	95771816	95771817	rs61886277	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in chronic hepatitis B	282 Asian, European, African and other ancestry cases, 641 Asian, European, African and other ancestry controls	NA	10q23.33	PLCE1, FFAR4, LGI1, SLC35G1, NOC3L, TBC1D12, HELLS, C10orf131	rs61886277-T	0.2252	1E-6		0.6342	[0.38-0.89] unit increase	Illumina [8102086] (imputed)	N
1316	chr10	95892658	95892659	rs10882397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q23.33		rs10882397-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1316	chr10	95892658	95892659	rs10882397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q23.33		rs10882397-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1316	chr10	95892787	95892788	rs10882398	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q23.33		rs10882398-T	0.569667	3E-10		0.0428306	[0.029-0.057] increase	Affymetrix [NR]	N
1316	chr10	95893513	95893514	rs10786152	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q23.33	PLCE1	rs10786152-A	0.5231	5E-6	(men)	0.0249	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1316	chr10	95893513	95893514	rs10786152	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q23.33	PLCE1	rs10786152-A	0.5231	3E-9		0.0221	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1316	chr10	95893513	95893514	rs10786152	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q23.33	PLCE1	rs10786152-A	0.5231	2E-8	(EA)	0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1316	chr10	95893513	95893514	rs10786152	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q23.33	PLCE1	rs10786152-?	0.5231	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1316	chr10	95893513	95893514	rs10786152	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q23.33	PLCE1	rs10786152-?	0.5231	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1316	chr10	95895126	95895127	rs2901761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q23.33		rs2901761-A	NR	8E-12		0.0337	[0.024-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1316	chr10	95895126	95895127	rs2901761	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q23.33	PLCE1	rs2901761-A	0.418024	8E-13		0.043702375	[0.032-0.056] unit increase	Affymetrix [7288503] (imputed)	N
1316	chr10	95895176	95895177	rs9663362	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q23.33	PLCE-1	rs9663362-G	0.53	5E-9	(Pulse Pressure)	0.271	[0.18-0.36] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1316	chr10	95895939	95895940	rs932764	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q23.33	PLCE1	rs932764-G	0.446	1E-7	(EA, initial)	0.385	[0.24-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1316	chr10	95895939	95895940	rs932764	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q23.33	PLCE1	rs932764-G	0.446	6E-8	(EA, initial)	0.256	[0.16-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1316	chr10	95895939	95895940	rs932764	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	PLCE1	rs932764-A		1E-14		0.297	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1316	chr10	95895939	95895940	rs932764	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	PLCE1	rs932764-A		3E-10		0.161	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1316	chr10	95895939	95895940	rs932764	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	PLCE1	rs932764-A		1E-7		0.125	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1316	chr10	95895939	95895940	rs932764	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q23.33	PLCE1	rs932764-A	0.554	7E-17		0.495	[0.38-0.61] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1316	chr10	95895939	95895940	rs932764	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q23.33	PLCE1	rs932764-A	0.554	6E-10		0.224	[0.15-0.29] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1316	chr10	95895939	95895940	rs932764	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	PLCE1	rs932764-G	0.44	7E-16		0.484	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1316	chr10	95895939	95895940	rs932764	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	PLCE1	rs932764-G	0.44	9E-9		0.055	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1316	chr10	95895939	95895940	rs932764	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q23.33	PLCE1	rs932764-G	0.44	8E-7		0.185	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1316	chr10	95906314	95906315	rs1223629	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	10q23.33	PLCE1	rs1223629-?		5E-6	(SI)	0.74	[0.41-1.07] unit decrease	Illumina [693128]	N
1316	chr10	95906314	95906315	rs1223629	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	10q23.33	PLCE1	rs1223629-?		3E-6	(SI+M)	0.74	[0.41-1.07] unit decrease	Illumina [693128]	N
1316	chr10	95908671	95908672	rs75265799	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10q23.33	NR	rs75265799-?	NR	5E-12		9076.843	NR unit decrease	Illumina [2379855]	N
1316	chr10	95910760	95910761	rs79958663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q23.33		rs79958663-T	NR	4E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1316	chr10	95931086	95931087	rs17417407	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	10q23.33	PLCE1	rs17417407-T	0.1695	3E-7		0.0196	[0.012-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
1316	chr10	95931086	95931087	rs17417407	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	10q23.33	PLCE1	rs17417407-T	0.1663	4E-7		0.0207	[0.013-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
1316	chr10	95931086	95931087	rs17417407	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	10q23.33	PLCE1	rs17417407-T	0.173	3E-11		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1316	chr10	95931086	95931087	rs17417407	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	10q23.33	PLCE1	rs17417407-T	0.1648	4E-11		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
1317	chr10	95946519	95946520	rs2689700	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	10q23.33	NR	rs2689700-A	0.1694	2E-7		0.0122	[0.0075-0.0169] unit increase	NR [~ 27400000] (imputed)	N
1317	chr10	95969912	95969913	rs10509669	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q23.33	PLCE1	rs10509669-A	0.74458	4E-13		0.025575	[0.019-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1317	chr10	95994507	95994508	rs76180455	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	10q23.33	PLCE1	rs76180455-?	0.02	7E-6	(adjusted for CYP2C19*2)	0.4	NR unit decrease	Illumina [5009928] (imputed)	N
1317	chr10	96009182	96009182	rs543302184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q23.33	NR	rs543302184-TA	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
1317	chr10	96009193	96009193	rs397722123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q23.33		rs397722123-TA	NR	6E-24		0.0246	[0.02-0.029] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1317	chr10	96012949	96012950	rs7080472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.33	PLCE1	rs7080472-T	0.424136	1E-10		0.01496276	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr10	96012949	96012950	rs7080472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q23.33	NR	rs7080472-T	0.426926	3E-14		0.014079	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1317	chr10	96012949	96012950	rs7080472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs7080472-T	0.431822	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
1317	chr10	96012949	96012950	rs7080472	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q23.33	NR	rs7080472-T	0.42294200000000004	1E-8		0.00452092	[0.0029-0.0062] unit increase	Affymetrix [16582909] (imputed)	N
1317	chr10	96012949	96012950	rs7080472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q23.33	NR	rs7080472-T	0.4534	4E-8	(East Asian)	0.3509	[0.23-0.48] unit decrease	Illumina [6200000] (imputed)	N
1317	chr10	96013704	96013705	rs9419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q23.33	PLCE1	rs9419788-G	NR	4E-11		0.0199082	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1317	chr10	96013704	96013705	rs9419788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q23.33	PLCE1	rs9419788-G	NR	8E-9		0.0167086	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1317	chr10	96013704	96013705	rs9419788	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	10q23.33	PLCE1	rs9419788-?	0.354	4E-8	(TCI-ST1)			Affymetrix [702866]	N
1317	chr10	96014621	96014622	rs10786156	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q23.33		rs10786156-G	0.46	5E-24		10.11	z score increase	Affymetrix [9061022] (imputed)	N
1317	chr10	96014621	96014622	rs10786156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q23.33		rs10786156-G	NR	4E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1317	chr10	96014621	96014622	rs10786156	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q23.33	NR	rs10786156-G	0.4337	1E-8				NR [9056863] (imputed)	N
1317	chr10	96014621	96014622	rs10786156	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q23.33	NR	rs10786156-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1317	chr10	96014621	96014622	rs10786156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q23.33		rs10786156-?	NR	7E-22				NR [~ 8900000] (imputed)	N
1317	chr10	96014621	96014622	rs10786156	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	10q23.33	PLCE1	rs10786156-?	0.55	2E-14		1.0526316	[1.04-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1317	chr10	96015668	96015669	rs554328395	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q23.33		rs554328395-A	0.981254	9E-9		0.159392	[0.1-0.22] decrease	Affymetrix [NR]	N
1317	chr10	96015792	96015793	rs3891783	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q23.33		rs3891783-G	0.46	2E-14		7.66	z score increase	Affymetrix [9061022] (imputed)	N
1317	chr10	96015792	96015793	rs3891783	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q23.33	NR	rs3891783-G	0.4337	5E-14				NR [9056863] (imputed)	N
1317	chr10	96015792	96015793	rs3891783	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	10q23.33	PLCE1	rs3891783-G	NR	2E-8		1.0752687	[1.05-1.11]	Affymetrix [at least 665500] (imputed)	N
1317	chr10	96017273	96017274	rs192879075	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q23.33	NR	rs192879075-?	NR	1E-8				Illumina [7760689] (imputed)	N
1317	chr10	96019028	96019029	rs75473620	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	10q23.33	PLCE1	rs75473620-?	0.96	6E-9		1.12	[1.08-1.16]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1317	chr10	96023076	96023077	rs57866767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q23.33		rs57866767-C	NR	2E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1317	chr10	96023076	96023077	rs57866767	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	10q23.33	PLCE1	rs57866767-T	NR	6E-19		0.0633	unit decrease	Illumina [15409056] (imputed)	N
1317	chr10	96023076	96023077	rs57866767	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	10q23.33	NR	rs57866767-?	NR	3E-60				NR [up to 7000000]	N
1317	chr10	96023076	96023077	rs57866767	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	10q23.33	NR	rs57866767-?	NR	2E-29				NR [up to 7000000]	N
1317	chr10	96023076	96023077	rs57866767	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	10q23.33	NR	rs57866767-?	NR	7E-71				NR [up to 7000000]	N
1317	chr10	96023076	96023077	rs57866767	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	10q23.33	PLCE1	rs57866767-C	0.433102	2E-10		0.05191377	[0.036-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
1317	chr10	96023076	96023077	rs57866767	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.33	PLCE1	rs57866767-C	0.5435	8E-21		0.306	[0.24-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
1317	chr10	96024356	96024357	rs60341058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q23.33		rs60341058-T	NR	8E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1317	chr10	96024356	96024357	rs60341058	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs60341058-T	0.184923	9E-12		0.0847273	[0.06-0.109] unit decrease	Affymetrix [21375087] (imputed)	N
1317	chr10	96025490	96025491	rs3740360	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q23.33	PLCE1	rs3740360-C	0.11431000000000002	6E-21		0.045529	[0.036-0.055] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1317	chr10	96025490	96025491	rs3740360	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q23.33	PLCE1	rs3740360-C	0.10907599999999995	4E-10		0.025733	[0.018-0.034] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q23.33	PLCE1	rs11289753-C	0.43601	2E-9		0.01332	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q23.33	PLCE1	rs11289753-C	0.43601	1E-10	(females)	0.01965	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q23.33	PLCE1	rs11289753-C	0.43601	3E-7	(females)	0.01734	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q23.33	PLCE1	rs11289753-C	0.43601	9E-9	(males)	0.03301	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q23.33	PLCE1	rs11289753-C	0.43601	1E-22		0.02055	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1317	chr10	96026184	96026185	rs11289753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q23.33	PLCE1	rs11289753-C	0.4342	9E-12		0.02519623	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1317	chr10	96026574	96026575	rs17109875	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs17109875-C	0.111751	2E-12		0.107886	[0.078-0.138] unit increase	Affymetrix [21375087] (imputed)	N
1317	chr10	96035979	96035980	rs11187837	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	10q23.33	PLCE1	rs11187837-?	0.12	4E-7	(Recessive)	1.79	[1.43-2.24]	Affymetrix [319222]	N
1317	chr10	96036305	96036306	rs7072574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.33		rs7072574-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1317	chr10	96036305	96036306	rs7072574	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	10q23.33	PLCE1	rs7072574-A	NR	1E-9		0.009	[0.0070-0.0110] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1317	chr10	96038401	96038402	rs35443777	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	10q23.33	PLCE1	rs35443777-A	0.33	4E-11		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.435	4E-14		7.5518336	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q23.33		rs11187838-A	0.43305	3E-6		0.032503	[0.019-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q23.33		rs11187838-A	NR	3E-31		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q23.33		rs11187838-A	NR	1E-14		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q23.33		rs11187838-A	NR	6E-15		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q23.33		rs11187838-A	NR	6E-15		0.045	[0.034-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q23.33		rs11187838-A	NR	3E-29		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q23.33		rs11187838-A	NR	5E-16		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	10q23.33	NR	rs11187838-A	0.436	2E-8		0.087	[0.058-0.116] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	9E-15	(4 ms)	0.0431676	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	7E-19	(-8 ms)	0.0492134	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	5E-14	(2 ms)	0.0419093	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	4E-20	(-10 ms)	0.0508413	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	4E-15	(10 ms)	0.0440413	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	4E-14	(0 ms)	0.0417768	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	3E-14	(-2 ms)	0.0420365	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	2E-18	(-14 ms)	0.0484535	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	2E-16	(-16 ms)	0.0450859	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	2E-15	(8 ms)	0.0444833	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	1E-19	(-12 ms)	0.050526	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	1E-16	(-6 ms)	0.0461507	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	1E-15	(6 ms)	0.0445512	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	1E-14	(-4 ms)	0.0432765	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q23.33	PLCE1	rs11187838-G	0.561381	1E-12	(-18 ms)	0.0397077	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q23.33	PLCE1	rs11187838-A	0.434035	2E-22		0.022362117	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs11187838-A	0.440499	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs11187838-A	0.435514	7E-26		0.101586	[0.082-0.121] unit increase	Affymetrix [21375087] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs11187838-A	0.434251	1E-34		0.082385	[0.069-0.096] unit increase	Affymetrix [17914406] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q23.33		rs11187838-?	NR	8E-45				NR [~ 8900000] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs11187838-?	NR	3E-7	(female)	0.12428	[0.077-0.172] unit increase	Affymetrix [7794483] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs11187838-?	NR	2E-6	(male)	0.16716	[0.098-0.236] unit increase	Affymetrix [7794483] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs11187838-?	NR	2E-11		0.14829	[0.1-0.19] unit increase	Affymetrix [7794483] (imputed)	N
1317	chr10	96038685	96038686	rs11187838	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	10q23.33	PLCE1	rs11187838-?	NR	1E-9		1.047	[1.032-1.063]	Illumina [13763073] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q23.33		rs2274224-C	NR	4E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	10q23.33	NR	rs2274224-C	NR	4E-8		1.039		Affymetrix [9869154] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	10q23.33	PLCE1	rs2274224-C	NR	6E-24		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	10q23.33		rs2274224-G	0.57	3E-6		0.009	mmol/L increase	NR [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q23.33		rs2274224-G	0.57	3E-28				NR [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q23.33		rs2274224-G	0.57	7E-29		0.017	% increase	NR [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	10q23.33		rs2274224-G	0.57	1E-9		0.012	U/L increase	NR [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	10q23.33		rs2274224-G	0.57	5E-10		0.012	U/L increase	NR [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q23.33	NR	rs2274224-C	0.4346	3E-13		0.001703	[0.0013-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q23.33	PLCE1	rs2274224-C	0.434294	1E-15		0.01794103	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs2274224-C	0.442832	2E-27				Affymetrix, Illumina [24649327] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs2274224-C	0.440684	1E-16				Affymetrix, Illumina [23467995] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	10q23.33	PLCE1; PLCE1-AS1	rs2274224-G	0.57	5E-10		0.0054	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	10q23.33	PLCE1	rs2274224-C	0.43	6E-6		1.0752687	NR	Affymetrix [at least 8002429] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10q23.33	PLCE1	rs2274224-?	NR	5E-14		0.04650402	NR unit increase	Affymetrix [464137]	N
1317	chr10	96039596	96039597	rs2274224	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q23.33	NR	rs2274224-C	0.44	8E-13		0.023	[0.017-0.029] z score increase	Affymetrix [up to 10400000] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q23.33	PLCE1	rs2274224-C	0.433117	1E-8		0.01756	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q23.33	PLCE1	rs2274224-C	0.434492	1E-16		0.021363	[0.016-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs2274224-?	NR	4E-6	(female)	0.15903	[0.091-0.227] unit decrease	Affymetrix [7794483] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs2274224-?	NR	4E-15		0.16676	[0.13-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1317	chr10	96039596	96039597	rs2274224	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q23.33	NR	rs2274224-?	NR	4E-11	(male)	0.17301	[0.12-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
1317	chr10	96040393	96040394	rs1858610	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	10q23.33	PLCE1	rs1858610-A	0.33	5E-11		0.016	[0.012-0.02] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1317	chr10	96043731	96043732	rs7084339	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	10q23.33	NR	rs7084339-A	NR	7E-6	(random effect)	1.04	NR	NR [6904914] (imputed)	N
1317	chr10	96056628	96056629	rs11187844	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.33	PLCE1	rs11187844-A	0.1188	1E-12		0.2729	[0.2-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1317	chr10	96058297	96058298	rs3765524	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	10q23.33	PLCE1	rs3765524-?	0.70	3E-10		1.25	[1.16-1.33]	Illumina [481342]	N
1317	chr10	96058297	96058298	rs3765524	20729852	Abnet CC	2010-08-22	Nat Genet	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	10q23.33	PLCE1, NOC3L	rs3765524-T	0.207	2E-9	(ESCC)	1.35	[1.22-1.49]	Illumina [551152]	N
1317	chr10	96058635	96058636	rs117607728	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	10q23.33	PLCE1	rs117607728-T	0.02	4E-7		0.333	unit increase	Illumina [~ 6300000] (imputed)	N
1317	chr10	96066340	96066341	rs2274223	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	10q23.33	PLCE1, KIAA1516	rs2274223-G	0.209	4E-18		1.35	[1.26-1.45]	Affymetrix, Illumina [7556215] (imputed)	N
1317	chr10	96066340	96066341	rs2274223	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	10q23.33	PLCE1	rs2274223-G	0.21	4E-20		1.34	[1.26-1.42]	Affymetrix [666141]	N
1317	chr10	96067946	96067947	rs10509670	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	10q23.33	NR	rs10509670-A	0.79	2E-22		0.78	NR	Affymetrix, Illumina [6957974] (imputed)	N
1317	chr10	96069053	96069054	rs10509671	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	10q23.33	NOC3L	rs10509671-C	0.15	3E-12		1.34	[1.23-1.45]	Affymetrix, Illumina [6192596] (imputed)	N
1317	chr10	96070374	96070375	rs3781264	20729852	Abnet CC	2010-08-22	Nat Genet	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	10q23.33	PLCE1, NOC3L	rs3781264-C	0.15	4E-9	(Total gastric)	1.36	[1.23-1.50]	Illumina [551152]	N
1317	chr10	96071560	96071561	rs2077218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q23.33		rs2077218-A	NR	1E-13		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.33	PLCE1	rs2077218-A	0.76201	8E-11		0.017655548	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q23.33	PLCE1	rs2077218-A	0.761756	3E-14		0.020124411	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q23.33	PLCE1	rs2077218-A	0.762051	2E-9		0.015743963	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q23.33	NR	rs2077218-A	0.763621	9E-16		0.017819	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs2077218-A	0.768435	3E-10				Affymetrix, Illumina [19905671] (imputed)	N
1317	chr10	96071560	96071561	rs2077218	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q23.33	NR	rs2077218-A	0.762238	5E-11		0.015946	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1318	chr10	96081139	96081140	rs7078844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q23.33	PLCE1, NOC3L	rs7078844-T	NR	8E-9		0.0201446	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1318	chr10	96081139	96081140	rs7078844	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs7078844-C	0.764321	3E-13		0.0838177	[0.061-0.107] unit decrease	Affymetrix [21375087] (imputed)	N
1318	chr10	96085376	96085377	rs6583939	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs6583939-T	0.842258	2E-10		0.0904232	[0.062-0.119] unit decrease	Affymetrix [21375087] (imputed)	N
1318	chr10	96089533	96089533	rs562571184	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs562571184-CAAA	0.648098	3E-10		0.0633539	[0.043-0.084] unit decrease	Affymetrix [21375087] (imputed)	N
1318	chr10	96098372	96098373	rs17517578	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	10q23.33	NR	rs17517578-T	NR	8E-9	(EA)	0.06	NR unit decrease	Affymetrix [723305]	N
1318	chr10	96098372	96098373	rs17517578	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	10q23.33	NR	rs17517578-T	NR	3E-7				Affymetrix [723305]	N
1318	chr10	96104664	96104665	rs3758526	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q23.33	NOC3L	rs3758526-G	0.13	2E-8		5.65	z-score increase	Affymetrix [4314223] (imputed)	N
1318	chr10	96108697	96108703	rs3052365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q23.33		rs3052365-A	NR	1E-20		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1318	chr10	96108697	96108703	rs3052365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q23.33		rs3052365-A	NR	4E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1318	chr10	96110491	96110492	rs76426033	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	10q23.33	NOC3L	rs76426033-A	NR	2E-6		0.03588	[NR] unit increase	Illumina [1124301]	N
1318	chr10	96116418	96116419	rs12771562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q23.33		rs12771562-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1318	chr10	96116419	96116420	rs12771055	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q23.33		rs12771055-A	0.844893	4E-17		0.0753344	[0.057-0.094] increase	Affymetrix [NR]	N
1318	chr10	96116419	96116420	rs12771055	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q23.33		rs12771055-A	0.845896	1E-15		0.0768769	[0.057-0.097] increase	Affymetrix [NR]	N
1318	chr10	96132616	96132617	rs9420636	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs9420636-G	0.175272	3E-8		0.0715326	[0.046-0.097] unit increase	Affymetrix [21375087] (imputed)	N
1318	chr10	96134684	96134685	rs7099229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q23.33		rs7099229-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1318	chr10	96144862	96144863	rs2244404	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	10q23.33	NR	rs2244404-T	0.191059	1E-8		0.0715456	[0.047-0.096] unit increase	Affymetrix [21375087] (imputed)	N
1318	chr10	96146132	96146133	rs9420637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q23.33		rs9420637-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1318	chr10	96154904	96154904	rs564653325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q23.33		rs564653325-CT	0.406463	6E-10		0.014539144	[0.0099-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr10	96156507	96156508	rs34041421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q23.33		rs34041421-T	0.429015	1E-9		0.0141721	[0.01-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr10	96158214	96158215	rs9420641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q23.33	TBC1D12	rs9420641-C	0.444261	1E-33		0.027414128	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1318	chr10	96163412	96163412	rs150327271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q23.33	TBC1D12	rs150327271-TCGGAGC	0.443411	2E-11		0.0149286175	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr10	96163797	96163798	rs692872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q23.33	NR	rs692872-A	0.442397	1E-15		0.014956	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1318	chr10	96166927	96166928	rs1749352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs1749352-T	0.512999	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1318	chr10	96169254	96169255	rs11598846	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs11598846-C	0.0576804	5E-12		0.095315	[0.066-0.124] unit increase	Affymetrix [17914406] (imputed)	N
1318	chr10	96177639	96177639	rs35708968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q23.33		rs35708968-TG	NR	5E-15		0.0141	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1318	chr10	96183350	96183351	rs11187938	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q23.33	TBC1D12	rs11187938-C	0.4789	2E-13		0.02607792	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1318	chr10	96191942	96191943	rs11187948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q23.33		rs11187948-A	NR	1E-15		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1318	chr10	96191942	96191943	rs11187948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q23.33		rs11187948-A	NR	2E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1319	chr10	96210399	96210400	rs9633675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q23.33	TBC1D12	rs9633675-C	0.478103	3E-18		0.019315448	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1319	chr10	96210399	96210400	rs9633675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q23.33	NR	rs9633675-C	0.478894	1E-24		0.01889	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1319	chr10	96210399	96210400	rs9633675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs9633675-C	0.52083	6E-19				Affymetrix, Illumina [23114412] (imputed)	N
1319	chr10	96210399	96210400	rs9633675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q23.33		rs9633675-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1319	chr10	96222452	96222453	rs200124419	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	10q23.33	RNF2	rs200124419-D	0.17	7E-13		7.6	[NR] unit decrease	Affymetrix [7884700] (imputed)	N
1319	chr10	96225702	96225703	rs7393251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs7393251-A	0.465285	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
1319	chr10	96229518	96229519	rs7921721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q23.33		rs7921721-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1319	chr10	96245895	96245896	rs67183237	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10q23.33	TBC1D12	rs67183237-T	NR	6E-13		0.029474	[0.021-0.038] unit increase	Affymetrix [16832071] (imputed)	N
1319	chr10	96278394	96278395	rs11187998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q23.33	NR	rs11187998-A	0.434487	5E-14		0.013755	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1319	chr10	96287257	96287258	rs10882472	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q23.33	TBC1D12	rs10882472-G	0.401082494283678	7E-6	(F_Streptococcaceae_RNT)	0.107191	[0.061-0.154] unit increase	Illumina [7711310] (imputed)	N
1319	chr10	96301906	96301907	rs1977289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q23.33	NR	rs1977289-C	0.478516	2E-21		0.018227	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1319	chr10	96305503	96305504	rs2274096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q23.33	NR	rs2274096-T	0.556863	3E-38		0.024457	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1319	chr10	96306604	96306605	rs11188012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q23.33	HELLS	rs11188012-G	0.477229	2E-29		0.025063964	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1319	chr10	96312003	96312003	rs147823305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q23.33		rs147823305-TTGTCTAGAC	NR	1E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1320	chr10	96348693	96348694	rs61886179	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs61886179-A	0.0546239	2E-12		0.100402	[0.071-0.13] unit increase	Affymetrix [17914406] (imputed)	N
1320	chr10	96353200	96353201	rs3781262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs3781262-G	0.552224	3E-36				Affymetrix, Illumina [22063850] (imputed)	N
1320	chr10	96356180	96356181	rs7078811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q23.33		rs7078811-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1320	chr10	96405328	96405329	rs12772169	28686080	Liu N	2017-07-07	Pharmacogenomics	Influence of common and rare genetic variation on warfarin dose among African-Americans and European-Americans using the exome array.	Warfarin maintenance dose (adjusted for clinical factors)	701 European ancestry individuals, 539 African American individuals	137 European Ancestry individuals, 330 African American individuals	10q23.33	Intergenic	rs12772169-A	0.41	8E-10	(AA)	0.102	unit decrease	Illumina [247870]	N
1320	chr10	96405328	96405329	rs12772169	19578179	Teichert M	2009-07-04	Hum Mol Genet	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	10q23.33	CYP2C18	rs12772169-?	NR	8E-12				Illumina [~ 550000]	N
1320	chr10	96405501	96405502	rs12777823	28686080	Liu N	2017-07-07	Pharmacogenomics	Influence of common and rare genetic variation on warfarin dose among African-Americans and European-Americans using the exome array.	Warfarin maintenance dose (adjusted for clinical factors)	701 European ancestry individuals, 539 African American individuals	137 European Ancestry individuals, 330 African American individuals	10q23.33	HELLS, CYP2C18	rs12777823-A	0.249	3E-11	(AA)	0.134	unit decrease	Illumina [247870]	N
1320	chr10	96405501	96405502	rs12777823	23755828	Perera MA	2013-06-05	Lancet	Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study.	Warfarin maintenance dose	533 African American individuals	432 African American individuals	10q23.33	CYP2C, CYP2C18, CYP2C9, CYP2C8, CYP2C19	rs12777823-?	NR	5E-12				Illumina [3044177] (imputed)	N
1320	chr10	96405501	96405502	rs12777823	19706858	Shuldiner AR	2009-08-26	JAMA	Association of cytochrome P450 2C19 genotype with the antiplatelet effect and clinical efficacy of clopidogrel therapy.	Response to clopidogrel therapy	429 Amish individuals	140 European ancestry individuals, 83 African American individuals, 4 individuals	10q23.33	CYP2C18, CYP2C9, CYP2C8, CYP2C19	rs12777823-?	0.17	2E-13	(Amish)			Affymetrix [400230]	N
1320	chr10	96407351	96407352	rs7089349	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q23.33	CYP2C18	rs7089349-T	0.84888	9E-11		0.00468701	[0.0033-0.0061] unit decrease	Affymetrix [13995440] (imputed)	N
1320	chr10	96422729	96422730	rs145080284	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced alopecia in inflammatory bowel disease	81 Japanese ancestry cases, 1,139 Japanese ancestry controls	NA	10q23.33	HELLS, CYP2C18, CYP2C19, TBC1D12	rs145080284-?	NR	1E-6		3.8	[2.2-6.5]	Affymetrix [> 5000000] (imputed)	N
1320	chr10	96434822	96434823	rs34870400	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q23.33	HELLS, CYP2C18	rs34870400-C	0.22	2E-10		6.34	z-score increase	Affymetrix [4311822] (imputed)	N
1320	chr10	96443722	96443723	rs56113807	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	10q23.33	CYP2C18	rs56113807-T	NR	5E-6		0.03067	[NR] unit increase	Illumina [1124301]	N
1320	chr10	96447561	96447562	rs41291550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q23.33	CYP2C18	rs41291550-A	0.00334000000000001	1E-9		0.11652928	[0.079-0.154] unit increase	Affymetrix [93095623] (imputed)	N
1320	chr10	96464729	96464730	rs7896133	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q23.33	CYP2C18, CYP2C19	rs7896133-?	NR	4E-26	(X-11787)	0.05619	[NR] unit decrease	Affymetrix [655658]	N
1321	chr10	96487306	96487307	rs35835168	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	10q23.33	TM9SF3, TLL2	rs35835168-C	0.827305	4E-35		0.453913	[0.38-0.52] unit decrease	Illumina [5009928] (imputed)	N
1321	chr10	96492672	96492673	rs61886201	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs61886201-A	0.0560042	3E-13		0.102471	[0.073-0.132] unit increase	Affymetrix [17914406] (imputed)	N
1321	chr10	96494869	96494869	rs10638737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q23.33		rs10638737-TTC	NR	3E-14		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1321	chr10	96501489	96501490	rs188683895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs188683895-C	0.988562	7E-9		0.102205	[0.068-0.137] unit increase	NR [11722792] (imputed)	N
1321	chr10	96501489	96501490	rs188683895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs188683895-C	0.988562	8E-9		0.101786	[0.067-0.136] unit increase	NR [11722792] (imputed)	N
1321	chr10	96501489	96501490	rs188683895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs188683895-C	0.988562	2E-8		0.102784	[0.067-0.139] unit increase	NR [11722792] (imputed)	N
1321	chr10	96501489	96501490	rs188683895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs188683895-C	0.988562	7E-9		0.101774	[0.067-0.136] unit increase	NR [11722792] (imputed)	N
1321	chr10	96501489	96501490	rs188683895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q23.33		rs188683895-C	0.988562	5E-9		0.103398	[0.069-0.138] unit increase	NR [11722792] (imputed)	N
1321	chr10	96522364	96522365	rs4986894	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C9	rs4986894-T	0.84	6E-12	(X-14473)	0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1321	chr10	96524394	96524395	rs58667319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q23.33	NR	rs58667319-T	0.122978	1E-15		0.02322	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1321	chr10	96534262	96534263	rs6583954	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q23.33	intergenic	rs6583954-T	0.14	4E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1321	chr10	96547462	96547463	rs12767583	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	Clozapine-to-N-desmethylclozapine metabolic ratio in schizophrenia	3,473 European ancestry individuals	NA	10q23.33	CYP2C19	rs12767583-T	NR	1E-16		0.063	[0.047-0.079] unit decrease	Illumina [up to 6200000] (imputed)	N
1321	chr10	96547462	96547463	rs12767583	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma clozapine-norclozapine ratio in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	10q23.33	CYP2C8, CYP2C9, CYP2C18, CYP2C19, HELLS, NOC3L, PLCE1, TBC1D12	rs12767583-T	0.143	5E-14				Illumina [~ 7500000] (imputed)	N
1321	chr10	96547462	96547463	rs12767583	19578179	Teichert M	2009-07-04	Hum Mol Genet	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	10q23.33	CYP2C19	rs12767583-?	NR	3E-7				Illumina [~ 550000]	N
1321	chr10	96563756	96563757	rs4494250	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q23.33	CYP2C19	rs4494250-A	0.318915546764454	1E-6		0.24689345	[0.15-0.35] unit increase	Illumina [247039]	N
1321	chr10	96563756	96563757	rs4494250	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	10q23.33	CYP2C19	rs4494250-A	0.319	3E-7		0.15	[0.091-0.209] unit increase	Illumina [247039]	N
1321	chr10	96587750	96587751	rs199562446	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q23.33	CYP2C19	rs199562446-T	0.1252	2E-9		0.3412	[0.23-0.45] mmHg decrease	Affymetrix [NR] (imputed)	N
1321	chr10	96591283	96591284	rs4917612	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q23.33	CYP2C19	rs4917612-C	0.8665	5E-33		0.0336	[0.028-0.039] unit decrease	Affymetrix [18391927] (imputed)	N
1321	chr10	96599509	96599510	rs7915414	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	10q23.33	NR	rs7915414-A	0.2	3E-14		6.01	[NR] unit decrease	Affymetrix [7884700] (imputed)	N
1322	chr10	96602397	96602398	rs28399513	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	10q23.33	NPM1P26, TM9SF3, PIK3AP1, RNA5SP324, RPS2P36	rs28399513-T	0.831002	1E-33		0.447534	[0.38-0.52] unit decrease	Illumina [5009928] (imputed)	N
1322	chr10	96609186	96609187	rs56881482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q23.33		rs56881482-G	NR	2E-9		0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1322	chr10	96639895	96639896	rs17110321	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q23.33	CYP2C18, CYP2C19, CYP2C9	rs17110321-?	NR	7E-23	(X-11787)	0.05321	[NR] unit decrease	Affymetrix [655658]	N
1322	chr10	96650327	96650328	rs4110517	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	CYP2C19, CYP2C9	rs4110517-A		1E-9		0.282	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1322	chr10	96650327	96650328	rs4110517	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	CYP2C19, CYP2C9	rs4110517-A		2E-6		0.148	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1322	chr10	96650327	96650328	rs4110517	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q23.33	CYP2C19, CYP2C9	rs4110517-A		2E-6		0.135	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1322	chr10	96652319	96652320	rs35013847	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q23.33	CYP2C19	rs35013847-G	0.649637	6E-20		0.00211983	[0.0016-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
1322	chr10	96665936	96665937	rs1853207	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C9	rs1853207-T	0.06	1E-12	(X-11247)	0.109	[0.08-0.138] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1322	chr10	96672073	96672074	rs61886764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q23.33	NR	rs61886764-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1322	chr10	96674194	96674195	rs66515460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q23.33		rs66515460-C	0.710768	3E-12		0.017200906	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1322	chr10	96681845	96681846	rs1074145	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	10q23.33	CYP2C9, CYP2C19	rs1074145-?	0.162	4E-9	(S-CT concentration)			Illumina [7537437] (imputed)	N
1322	chr10	96681845	96681846	rs1074145	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	10q23.33	CYP2C9, CYP2C19	rs1074145-?	0.162	2E-16	(S-DCT/S-CT ratio)			Illumina [7537437] (imputed)	N
1322	chr10	96702046	96702047	rs1799853	19300499	Takeuchi F	2009-03-20	PLoS Genet	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	10q23.33	CYP2C9	rs1799853-?	0.11	1E-31		0.54	[0.45-0.63] mg/week decrease	Illumina [325997]	N
1322	chr10	96702551	96702552	rs28371678	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs28371678-C	0.0573712	6E-13		0.100252	[0.071-0.129] unit increase	Affymetrix [17914406] (imputed)	N
1322	chr10	96707201	96707202	rs4086116	18535201	Cooper GM	2008-06-05	Blood	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	10q23.33	CYP2C9	rs4086116-?	NR	6E-12				Illumina [538629]	N
1322	chr10	96722243	96722244	rs9332146	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	10q23.33	CYP2C9	rs9332146-A	0.012	3E-6				Illumina [331281]	N
1322	chr10	96728168	96728169	rs55891451	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs55891451-A	0.79828	2E-11		0.033166	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1322	chr10	96728168	96728169	rs55891451	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	10q23.33		rs55891451-A	0.79828	1E-10		0.03156	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1323	chr10	96734338	96734339	rs10509680	20833655	Cha PC	2010-09-10	Hum Mol Genet	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 Japanese ancestry low dose individuals, 701 Japanese ancestry high dose individuals	444 Japanese ancestry individuals	10q23.33	CYP2C9	rs10509680-?	NR	4E-7				Illumina [485227]	N
1323	chr10	96734675	96734676	rs1934963	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C9	rs1934963-T	0.8	9E-65	(X-11787)	0.029	[0.025-0.033] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1323	chr10	96741052	96741053	rs1057910	19300499	Takeuchi F	2009-03-20	PLoS Genet	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	10q23.33	CYP2C9	rs1057910-?	0.07	3E-79		1.11	[1.00-1.22] mg/week decrease	Illumina [325997]	N
1323	chr10	96748491	96748492	rs9332238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs9332238-G	0.801701	3E-12		0.0347177	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
1323	chr10	96749180	96749181	rs9332245	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q23.33	CYP2C19, CYP2C9	rs9332245-?	NR	7E-21	(X-11787)	0.0504	[NR] unit decrease	Affymetrix [655658]	N
1323	chr10	96749935	96749936	rs61886804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q23.33		rs61886804-T	0.799762	1E-12		0.0351105	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1323	chr10	96749935	96749936	rs61886804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	10q23.33		rs61886804-T	0.799762	3E-8		0.0277284	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1323	chr10	96750542	96750543	rs4918798	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	10q23.33	CYP2C9	rs4918798-C		2E-13	(Brazilian)	6.22		Affymetrix [> 650000] (imputed)	N
1323	chr10	96751269	96751270	rs2185570	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	10q23.33	CYP2C9	rs2185570-C	0.13	2E-8		0.06	[0.04-0.08] u mol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1323	chr10	96766933	96766934	rs2860975	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q23.33	CYP2C9	rs2860975-?		2E-7	(Hispanic)			Illumina [NR]	N
1323	chr10	96788560	96788561	rs1934955	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C8	rs1934955-A	0.71	3E-16	(X-02249)	0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1323	chr10	96792201	96792202	rs1934954	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	10q23.33	CYP2C8	rs1934954-T	0.98	3E-6		7.1429	[NR]	Affymetrix [up to 4467279] (imputed)	N
1323	chr10	96797469	96797470	rs1934953	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	10q23.33	CYP2C8	rs1934953-?		5E-7	(Hispanic)			Illumina [NR]	N
1323	chr10	96798547	96798548	rs1934951	18594024	Sarasquete ME	2008-07-01	Blood	Bisphosphonate-related osteonecrosis of the jaw is associated with polymorphisms of the cytochrome P450 CYP2C8 in multiple myeloma: a genome-wide single nucleotide polymorphism analysis.	Osteonecrosis of the jaw	22 European ancestry cases, 65 European ancestry controls	NA	10q23.33	CYP2C8	rs1934951-T	0.12	1E-6		12.75	[3.7-43.5]	Affymetrix [339972]	N
1323	chr10	96802597	96802598	rs2275620	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	10q23.33	CYP2C8	rs2275620-?		1E-7				Illumina [479403]	N
1323	chr10	96819394	96819395	rs191305096	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q23.33	NR	rs191305096-C	0.0497971	5E-11		0.096012	[0.066-0.127] unit increase	Affymetrix [17914406] (imputed)	N
1323	chr10	96822282	96822283	rs142308077	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q23.33	CYP2C8	rs142308077-A	0.914737	1E-11	(andro steroid monosulfate C19H28O6S (1)*)	0.27	[0.19-0.35] unit decrease	Illumina [13039987] (imputed)	N
1323	chr10	96822282	96822283	rs142308077	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10q23.33	CYP2C8	rs142308077-A	0.914737	1E-11	(andro steroid monosulfate C19H28O6S (1)*)	0.27	[0.19-0.35] unit decrease	Illumina [13039987] (imputed)	N
1323	chr10	96823811	96823812	rs111328885	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q23.33	NR	rs111328885-C	0.878145	2E-14		0.0325591	[0.024-0.041] unit increase	Affymetrix [16580851] (imputed)	N
1323	chr10	96826921	96826922	rs11572082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q23.33	NR	rs11572082-C	0.878485	8E-11		0.0129824	[0.0091-0.0168] unit increase	Affymetrix [16578495] (imputed)	N
1323	chr10	96828322	96828323	rs2071426	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q23.33	CYP2C8	rs2071426-C	0.32	2E-14	(X - 16087)	0.219	[0.16-0.28] unit increase	Illumina [7750367] (imputed)	N
1323	chr10	96828322	96828323	rs2071426	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C8	rs2071426-T	0.71	7E-14	(X-02269)	0.055	[0.041-0.069] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1323	chr10	96828322	96828323	rs2071426	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q23.33	CYP2C8	rs2071426-T	0.71	4E-14	(X-11469)	0.052	[0.038-0.066] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1323	chr10	96852689	96852690	rs72820627	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	10q23.33	intergenic	rs72820627-?	NR	7E-6	(SF8)			Affymetrix [5476100] (imputed)	N
1324	chr10	96904056	96904057	rs632113	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q23.33	CYP2C8, C10orf129	rs632113-T	0.413847	1E-10	(3-hydroxy-2-ethylpropionate)	0.153	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
1324	chr10	96904056	96904057	rs632113	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10q23.33	CYP2C8, C10orf129	rs632113-T	0.413847	1E-10	(3-hydroxy-2-ethylpropionate)	0.153	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
1324	chr10	96919330	96919331	rs149287350	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL157834.1	rs149287350-?	NR	5E-10		2.55821	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1324	chr10	96932699	96932700	rs140962577	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q23.33	CYP2C8, ACSM6	rs140962577-?		8E-9		0.5193	[0.34-0.7] unit increase	Illumina [31500000] (imputed)	N
1324	chr10	96932699	96932700	rs140962577	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q23.33	CYP2C8, ACSM6	rs140962577-?		2E-8		0.497	[0.32-0.67] unit increase	Illumina [31500000] (imputed)	N
1324	chr10	96981896	96981897	rs117833093	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ACSM6	rs117833093-?	NR	3E-9		3.57215	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1324	chr10	96987011	96987012	rs685607	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q23.33	ACSM6	rs685607-A	0.45	1E-12	(dimethylmalonic acid)	0.139	[0.1-0.178] unit increase	Illumina [7750367] (imputed)	N
1325	chr10	96999872	96999873	rs7910217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q23.33	PDLIM1	rs7910217-A	0.321503	3E-10		0.01489219	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr10	96999872	96999873	rs7910217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q23.33	NR	rs7910217-A	0.320646	4E-11		0.01302	[0.0092-0.0169] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1325	chr10	97022126	97022127	rs2026679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q23.33	PDLIM1	rs2026679-G	0.707233	6E-13		0.017540094	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr10	97025508	97025509	rs115592939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs115592939-C	0.626156	1E-13				Affymetrix, Illumina [23114412] (imputed)	N
1325	chr10	97041762	97041763	rs4918909	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	10q23.33		rs4918909-?	NR	1E-7		1.607	[1.348-1.917]	Affymetrix [7975321] (imputed)	N
1325	chr10	97053774	97053775	rs1328599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q23.33	PDLIM1	rs1328599-T	0.9227422	8E-23		0.04169938	[0.033-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr10	97053774	97053775	rs1328599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q23.33	NR	rs1328599-G	0.0780814	1E-36				Affymetrix, Illumina [17210439] (imputed)	N
1325	chr10	97053774	97053775	rs1328599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q23.33	NR	rs1328599-G	0.07763	7E-37		0.045956	[0.039-0.053] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1325	chr10	97053774	97053775	rs1328599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q23.33	PDLIM1	rs1328599-T	0.9227	3E-14		0.05176265	[0.038-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1325	chr10	97055152	97055153	rs117780395	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs117780395-T	0.03136	5E-9	(HSP90AB2P)	0.06378	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	4E-11	(HSP90AB2P)	0.087	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	3E-8	(TARS)	0.08081	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	2E-8	(AKR1C3)	0.4048	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	1E-9	(FKBP4)	0.03443	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	1E-9	(EXD1)	0.01637	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97056250	97056251	rs150356982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q23.33	NR	rs150356982-A	0.02439	1E-8	(HSP90AB1)	2.386	NR unit increase	Illumina [1671387] (imputed)	N
1325	chr10	97057369	97057370	rs75522380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q23.33		rs75522380-T	0.00585500000000006	4E-17		0.13552293	[0.1-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr10	97074128	97074129	rs17849148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q24.1	SORBS1	rs17849148-G	0.083075	7E-12		0.02795467	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr10	97122240	97122241	rs4918918	21041247	Perlis RH	2010-11-01	Am J Psychiatry	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	10q24.1	PDLIM1, SORBS1	rs4918918-T	NR	3E-6		1.18		Affymetrix [1922309] (imputed)	N
1326	chr10	97196977	97196978	rs2274491	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	10q24.1	intergenic	rs2274491-?	0.68	7E-6		1.12	[1.06-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1326	chr10	97226509	97226510	rs564370	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.1	ALDH18A1	rs564370-?	NR	2E-6	(oxalate)	0.1835641	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1326	chr10	97229761	97229762	rs579342	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.1	SORBS1	rs579342-A	0.041	4E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1326	chr10	97237626	97237627	rs943344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.1	SORBS1	rs943344-A	0.335927	5E-11		0.016916279	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1326	chr10	97237626	97237627	rs943344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q24.1	SORBS1	rs943344-A	0.335945	1E-10		0.01655855	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1326	chr10	97237626	97237627	rs943344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs943344-A	0.365192	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
1326	chr10	97237626	97237627	rs943344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q24.1	NR	rs943344-A	0.337297	2E-12		0.015835	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1326	chr10	97239780	97239781	rs7089306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.1		rs7089306-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1326	chr10	97254304	97254305	rs943346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.1	NR	rs943346-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1326	chr10	97254304	97254305	rs943346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q24.1		rs943346-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1326	chr10	97254304	97254305	rs943346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.1		rs943346-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1327	chr10	97258988	97258989	rs7077966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q24.1		rs7077966-T	NR	3E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1327	chr10	97258988	97258989	rs7077966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q24.1		rs7077966-T	NR	3E-9		0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1327	chr10	97258988	97258989	rs7077966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs7077966-T	0.417038	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
1327	chr10	97259559	97259560	rs1536446	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 45)	4,680 European ancestry individuals	3,566 European ancestry individuals	10q24.1		rs1536446-G	0.411409396	4E-8				Illumina [7417619] (imputed)	N
1327	chr10	97260114	97260115	rs7100779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q24.1		rs7100779-G	NR	5E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1327	chr10	97260114	97260115	rs7100779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs7100779-G	0.20194	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1327	chr10	97260114	97260115	rs7100779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q24.1	NR	rs7100779-G	0.170107	8E-12		0.016845	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1327	chr10	97262540	97262541	rs12221125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.1		rs12221125-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1327	chr10	97277535	97277536	rs189712177	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	10q24.1	NR	rs189712177-G	0.0115	4E-6		186.0	[107-265] unit increase	NR [9714326] (imputed)	N
1327	chr10	97278921	97278922	rs4918943	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q24.1	SORBS1	rs4918943-A	0.2185	2E-12		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1327	chr10	97284080	97284081	rs1326934	25476525	Germain M	2014-12-06	Diabetologia	SORBS1 gene, a new candidate for diabetic nephropathy: results from a multi-stage genome-wide association study in patients with type 1 diabetes.	Diabetic nephropathy in type 1 diabetes	683 European ancestry cases, 779 European ancestry controls	2,962 European ancestry cases, 3,379 European ancestry controls	10q24.1	SORBS1	rs1326934-T	0.57	6E-7		1.19	[1.11-1.27]	Illumina [11133962] (imputed)	N
1327	chr10	97293911	97293912	rs4918947	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (persistent)	141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals	NA	10q24.1	SORBS1, ALDH18A1	rs4918947-A	0.05	2E-6		3.91	[2.24-6.83]	Affymetrix, Illumina [at least 603042] (imputed)	N
1327	chr10	97295588	97295589	rs12772243	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs12772243-G	0.0871224178571429	5E-6	(IGP36)	0.2472	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1327	chr10	97301003	97301004	rs11188352	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs11188352-G	0.042712513900135	6E-6	(IGP12)	0.4192	[0.24-0.6] unit increase	Illumina [~ 2500000] (imputed)	N
1327	chr10	97301003	97301004	rs11188352	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs11188352-G	0.0425983854693141	5E-6	(IGP52)	0.4264	[0.24-0.61] unit increase	Illumina [~ 2500000] (imputed)	N
1327	chr10	97301003	97301004	rs11188352	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs11188352-G	0.0425983446750903	3E-6	(IGP73)	0.4377	[0.25-0.62] unit increase	Illumina [~ 2500000] (imputed)	N
1327	chr10	97317956	97317957	rs11188360	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	10q24.1	NR	rs11188360-A	0.149671	3E-6		1.19	[1.1-1.27]	Illumina [8992756] (imputed)	N
1327	chr10	97321922	97321923	rs7918235	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7918235-C	0.02774	3E-14		0.6523	[0.49-0.82] unit decrease	Illumina [17954496] (imputed)	N
1327	chr10	97331196	97331197	rs7086374	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7086374-C	0.04418	1E-10		0.4227	[0.29-0.55] unit increase	Illumina [17954496] (imputed)	N
1327	chr10	97365162	97365163	rs12359272	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	10q24.1	ALDH18A1, SORBS1	rs12359272-A	0.37	4E-16		1.0	[0.75-1.25] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1327	chr10	97378037	97378038	rs17111041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs17111041-G	0.02747	4E-33		0.6212	[0.52-0.72] unit increase	Illumina [18357815] (imputed)	N
1327	chr10	97378037	97378038	rs17111041	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell %CD4+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs17111041-G	0.02747	2E-38		0.6654	[0.57-0.76] unit increase	Illumina [18357815] (imputed)	N
1327	chr10	97385358	97385371	rs139646474	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs139646474-T	0.03357	6E-17		0.6595	[0.51-0.81] unit increase	Illumina [17954496] (imputed)	N
1328	chr10	97388578	97388579	rs10882644	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q24.1	ALDH18A1, SORBS1	rs10882644-T	0.3756	9E-31		0.7597	[0.63-0.89] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1328	chr10	97395961	97395962	rs56322409	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.1	ALDH18A1	rs56322409-T	0.63	8E-11	(citrulline)	0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1328	chr10	97403215	97403216	rs117958583	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117958583-C	0.04107	2E-50		0.6811	[0.59-0.77] unit increase	Illumina [18340221] (imputed)	N
1328	chr10	97403215	97403216	rs117958583	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117958583-C	0.04098	1E-66		0.7563	[0.67-0.84] unit increase	Illumina [18357815] (imputed)	N
1328	chr10	97403215	97403216	rs117958583	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117958583-C	0.04098	9E-57		0.6982	[0.61-0.78] unit increase	Illumina [18357815] (imputed)	N
1328	chr10	97403247	97403248	rs117519014	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117519014-A	0.0427	8E-11		0.4352	[0.3-0.57] unit increase	Illumina [17951463] (imputed)	N
1328	chr10	97434611	97434612	rs374678068	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA			rs374678068-G	NR	9E-9		0.702	[0.46-0.94] unit decrease	Affymetrix [509886] (imputed)	N
1328	chr10	97442175	97442176	rs141293370	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs141293370-A	0.04248	4E-39		0.8798	[0.75-1.01] unit increase	Illumina [17954496] (imputed)	N
1328	chr10	97442175	97442176	rs141293370	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs141293370-A	0.04248	2E-27		0.7361	[0.6-0.87] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97461205	97461206	rs7085059	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell %resting CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7085059-C	0.97279	4E-26		0.8473	[0.69-1] unit decrease	Illumina [18353565] (imputed)	N
1328	chr10	97461205	97461206	rs7085059	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7085059-C	0.973	2E-31		0.6483	[0.54-0.76] unit decrease	Illumina [18340221] (imputed)	N
1328	chr10	97461205	97461206	rs7085059	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7085059-C	0.97282	7E-31		0.6161	[0.51-0.72] unit decrease	Illumina [18357815] (imputed)	N
1328	chr10	97461205	97461206	rs7085059	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7085059-C	0.97282	7E-33		0.6404	[0.54-0.74] unit decrease	Illumina [18357815] (imputed)	N
1328	chr10	97464046	97464047	rs11188441	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs11188441-T	0.02648	2E-32		0.6759	[0.57-0.79] unit increase	Illumina [18340221] (imputed)	N
1328	chr10	97469108	97469109	rs7073937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7073937-T	0.22429	2E-9		0.2043	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97472569	97472570	rs4918960	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4918960-A	0.48399	1E-700		1.054	[1.02-1.09] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97474370	97474371	rs10882655	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10882655-A	0.52765	8E-28		0.2945	[0.24-0.35] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97474370	97474371	rs10882655	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10882655-A	0.52765	1E-700		1.009	[0.97-1.05] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97474370	97474371	rs10882655	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10882655-A	0.52765	1E-700		0.9837	[0.94-1.03] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97482798	97482799	rs150505174	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs150505174-T	0.04181	5E-22		0.4564	[0.36-0.55] unit decrease	Illumina [18353565] (imputed)	N
1328	chr10	97485829	97485830	rs117864318	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	10q24.1		rs117864318-?	NR	2E-7				Affymetrix [810906]	N
1328	chr10	97486276	97486277	rs138153402	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs138153402-C	0.04313	3E-143		1.649	[1.53-1.77] unit decrease	Illumina [17954496] (imputed)	N
1328	chr10	97507311	97507312	rs7086986	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7086986-G	0.47263	6E-74		0.4907	[0.44-0.54] unit increase	Illumina [17954496] (imputed)	N
1328	chr10	97510703	97510704	rs10882659	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD39+ activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10882659-C	0.42643	3E-16		0.2226	[0.17-0.28] unit decrease	Illumina [17954450] (imputed)	N
1328	chr10	97511466	97511467	rs7084741	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell %activated CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7084741-A	0.02721	1E-43		0.6867	[0.59-0.78] unit increase	Illumina [18353565] (imputed)	N
1328	chr10	97511487	97511487	rs57785453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q24.1	ENTPD1	rs57785453-CA	0.405056	8E-12		0.01654354	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1329	chr10	97519644	97519645	rs1539433	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs1539433-T	0.47171	5E-95		0.5445	[0.49-0.59] unit increase	Illumina [17954496] (imputed)	N
1329	chr10	97522794	97522795	rs5014871	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %secreting CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs5014871-G	0.46845	1E-32		0.5063	[0.42-0.59] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97523779	97523780	rs4551688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs4551688-G	0.510304	1E-17				Affymetrix, Illumina [24588908] (imputed)	N
1329	chr10	97523779	97523780	rs4551688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q24.1	NR	rs4551688-G	0.549773	1E-18		0.016199	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	8E-10	(-94 ms)	0.0389573	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	7E-14	(-108 ms)	0.0456839	[0.034-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	6E-11	(-98 ms)	0.0407263	[0.029-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	4E-12	(-106 ms)	0.0429528	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	4E-12	(-100 ms)	0.0428924	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	3E-8	(-92 ms)	0.0354452	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	3E-15	(-110 ms)	0.0479275	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	3E-14	(-112 ms)	0.0460936	[0.034-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97527086	97527087	rs10882661	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ENTPD1	rs10882661-A	0.680797	1E-10	(-96 ms)	0.040397	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1329	chr10	97546626	97546627	rs35748815	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.1	NR	rs35748815-G	0.02439	4E-9	(CP)	0.1769	NR unit increase	Illumina [1671387] (imputed)	N
1329	chr10	97549795	97549796	rs115178468	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs115178468-T	0.04236	2E-28		0.5134	[0.42-0.6] unit increase	Illumina [18335935] (imputed)	N
1329	chr10	97549795	97549796	rs115178468	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell %activated CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs115178468-T	0.04226	3E-45		0.53	[0.46-0.6] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97551951	97551952	rs117653391	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117653391-A	0.04202	1E-34		0.5265	[0.44-0.61] unit decrease	Illumina [18353565] (imputed)	N
1329	chr10	97551951	97551952	rs117653391	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs117653391-A	0.04349	5E-12		0.4593	[0.33-0.59] unit increase	Illumina [17954496] (imputed)	N
1329	chr10	97559526	97559527	rs11188488	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs11188488-G	0.02617	1E-10		0.5574	[0.39-0.73] unit decrease	Illumina [17954496] (imputed)	N
1329	chr10	97562937	97562938	rs4918969	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4918969-A	0.42674	4E-294		0.8426	[0.8-0.88] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97563006	97563007	rs4918970	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q24.1	ENTPD1	rs4918970-G	0.57296875	2E-8	(ENTPD1, 7999_23_3)	0.13591346	[0.089-0.183] unit decrease	Illumina [> 1000000] (imputed)	N
1329	chr10	97565782	97565783	rs7914286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7914286-A	0.42578	2E-488		0.9765	[0.94-1.02] unit increase	Illumina [18335935] (imputed)	N
1329	chr10	97565782	97565783	rs7914286	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7914286-A	0.42578	1E-17		0.4246	[0.33-0.52] unit increase	Illumina [18335935] (imputed)	N
1329	chr10	97566051	97566052	rs6584030	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ activated CD4 regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs6584030-C	0.46734	1E-20		0.2344	[0.19-0.28] unit decrease	Illumina [18357036] (imputed)	N
1329	chr10	97566051	97566052	rs6584030	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ CD4 regulatory T cell	3,434 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs6584030-C	0.46733	2E-21		0.238	[0.19-0.29] unit decrease	Illumina [18356566] (imputed)	N
1329	chr10	97568787	97568788	rs12240959	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q24.1	NR	rs12240959-?	NR	2E-8				Illumina [7760689] (imputed)	N
1329	chr10	97569997	97569998	rs4918971	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4918971-G	0.42631	2E-258		0.8068	[0.76-0.85] unit increase	Illumina [18335935] (imputed)	N
1329	chr10	97570314	97570315	rs10736092	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10736092-G	0.46907	6E-444		0.9153	[0.88-0.96] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97570314	97570315	rs10736092	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10736092-G	0.46895	3E-607		1.01	[0.97-1.05] unit increase	Illumina [18357815] (imputed)	N
1329	chr10	97570314	97570315	rs10736092	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10736092-G	0.46895	5E-712		1.014	[0.98-1.05] unit increase	Illumina [18357815] (imputed)	N
1329	chr10	97570314	97570315	rs10736092	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell %CD4+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10736092-G	0.46895	7E-738		1.023	[0.99-1.06] unit increase	Illumina [18357815] (imputed)	N
1329	chr10	97574654	97574655	rs4075311	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	10q24.1		rs4075311-T	0.561638	2E-10		0.0434855	[0.03-0.057] increase	Affymetrix [NR]	N
1329	chr10	97574654	97574655	rs4075311	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q24.1		rs4075311-T	0.562243	9E-9		0.0428284	[0.028-0.058] increase	Affymetrix [NR]	N
1329	chr10	97574654	97574655	rs4075311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q24.1		rs4075311-C	NR	2E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1329	chr10	97574688	97574689	rs4075310	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4075310-T	0.47328	8E-170		0.7175	[0.67-0.76] unit decrease	Illumina [17954496] (imputed)	N
1329	chr10	97592296	97592297	rs4917715	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4917715-G	0.46906	1E-583		1.002	[0.96-1.04] unit increase	Illumina [18357815] (imputed)	N
1329	chr10	97595044	97595045	rs4539246	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell %activated CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs4539246-T	0.42663	1E-897		1.112	[1.08-1.15] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97600918	97600919	rs11188501	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.1	ENTPD1	rs11188501-A	0.34	2E-16	(Ectonucleoside triphosphate diphosphohydrolase 1, ENTPD1.7999.23.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1329	chr10	97601702	97601703	rs10748649	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10748649-C	0.46904	2E-574		1.01	[0.97-1.05] unit increase	Illumina [18340221] (imputed)	N
1329	chr10	97601702	97601703	rs10748649	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs10748649-C	0.47329	1E-56		0.4156	[0.37-0.47] unit increase	Illumina [17954496] (imputed)	N
1329	chr10	97603162	97603163	rs2861152	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %secreting CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs2861152-A	0.427	4E-631		1.04	[1-1.08] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97603162	97603163	rs2861152	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell %resting CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs2861152-A	0.427	1E-311		0.9031	[0.86-0.95] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97607643	97607644	rs7088584	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7088584-T	0.46867	5E-630		1.016	[0.98-1.05] unit increase	Illumina [18353565] (imputed)	N
1329	chr10	97607643	97607644	rs7088584	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ activated CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7088584-T	0.46852	4E-304		0.8768	[0.84-0.92] unit increase	Illumina [18335935] (imputed)	N
1329	chr10	97607643	97607644	rs7088584	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ CD4+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7088584-T	0.4684	1E-605		1.016	[0.98-1.05] unit increase	Illumina [18340221] (imputed)	N
1329	chr10	97608113	97608114	rs7088961	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7088961-G	0.47293	4E-82		0.502	[0.45-0.55] unit increase	Illumina [17951463] (imputed)	N
1329	chr10	97608113	97608114	rs7088961	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ CD8+ T cell	2,914 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs7088961-G	0.47309	2E-18		0.2341	[0.18-0.29] unit increase	Illumina [17951426] (imputed)	N
1329	chr10	97613251	97613252	rs9702308	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs9702308-T	0.46841	8E-22		0.2511	[0.2-0.3] unit increase	Illumina [17954496] (imputed)	N
1329	chr10	97635515	97635516	rs2096219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q24.1	ENTPD1	rs2096219-T	0.484263	1E-11		0.01526086	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1329	chr10	97635515	97635516	rs2096219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q24.1	ENTPD1	rs2096219-T	0.484255	1E-12		0.016009353	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1330	chr10	97662653	97662654	rs191926241	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs191926241-A	0.02125	3E-14		0.47	[0.35-0.59] unit increase	Illumina [18353565] (imputed)	N
1330	chr10	97665382	97665383	rs148473024	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs148473024-T	0.04416	7E-30		0.7381	[0.61-0.86] unit decrease	Illumina [17954496] (imputed)	N
1330	chr10	97665382	97665383	rs148473024	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs148473024-T	0.04416	2E-45		0.9263	[0.8-1.05] unit decrease	Illumina [17954496] (imputed)	N
1330	chr10	97665382	97665383	rs148473024	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on CD39+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs148473024-T	0.04416	5E-47		0.9403	[0.81-1.07] unit decrease	Illumina [17954496] (imputed)	N
1330	chr10	97668796	97668802	rs148208131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ resting CD4 regulatory T cell	2,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs148208131-G	0.04056	2E-12		0.4979	[0.36-0.64] unit increase	Illumina [17852597] (imputed)	N
1330	chr10	97680968	97680969	rs9919426	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ secreting CD4 regulatory T cell %secreting CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs9919426-A	0.02739	2E-16		0.4522	[0.35-0.56] unit increase	Illumina [18353565] (imputed)	N
1330	chr10	97690618	97690619	rs7913576	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q24.1	CC2D2B	rs7913576-T	0.563513384820432	9E-6		0.0024063	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1330	chr10	97736573	97736574	rs143284507	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs143284507-T	0.02637	4E-20		0.766	[0.6-0.93] unit increase	Illumina [18335935] (imputed)	N
1330	chr10	97736573	97736574	rs143284507	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q24.1		rs143284507-T	0.02647	3E-22		0.7958	[0.64-0.96] unit increase	Illumina [18353565] (imputed)	N
1330	chr10	97740460	97740461	rs1414915	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q24.1	ENTPD1-AS1, RP11-248J23.6, CC2D2B, RP11-690P14.4	rs1414915-T	0.3302	5E-7		0.0323	[0.02-0.045] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1330	chr10	97773250	97773250	rs140105668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q24.1		rs140105668-TTAAA	NR	4E-8		0.0141	[0.009-0.0192] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1331	chr10	97783873	97783874	rs11814327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.1	NR	rs11814327-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1331	chr10	97803996	97803997	rs1889921	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	10q24.1	CCNJ	rs1889921-T	0.53	3E-22				Illumina [at least 532488] (imputed)	N
1331	chr10	97803996	97803997	rs1889921	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	10q24.1	CCNJ	rs1889921-T	0.53	2E-20	(japanese)	0.24	[0.18-0.3] year increase	Illumina [at least 532488] (imputed)	N
1331	chr10	97824967	97824968	rs2039616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10q24.1	ENTPD1-AS1	rs2039616-A	NR	9E-9		0.0185139	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1331	chr10	97830082	97830083	rs4918985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	10q24.1		rs4918985-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1331	chr10	97833006	97833007	rs9783259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q24.1		rs9783259-A	NR	2E-9		0.0222	[0.015-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1331	chr10	97856898	97856899	rs11188601	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q24.1	NR	rs11188601-C	0.36405699999999996	1E-22		0.00815174	[0.0065-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
1331	chr10	97856898	97856899	rs11188601	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q24.1	NR	rs11188601-C	0.36445399999999994	6E-17		0.00968361	[0.0072-0.0122] unit increase	Affymetrix [16585854] (imputed)	N
1331	chr10	97856898	97856899	rs11188601	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q24.1	NR	rs11188601-C	0.36405699999999996	3E-16		0.00769179	[0.0058-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1331	chr10	97856898	97856899	rs11188601	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q24.1	NR	rs11188601-C	0.36445399999999994	3E-12		0.0096678	[0.0068-0.0126] unit increase	Affymetrix [16585866] (imputed)	N
1331	chr10	97862579	97862580	rs11188604	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	10q24.1	NR	rs11188604-G	NR	8E-10		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1331	chr10	97862579	97862580	rs11188604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.1		rs11188604-?	NR	8E-34				NR [~ 8900000] (imputed)	N
1331	chr10	97877319	97877320	rs1172955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q24.1		rs1172955-A	0.20476	7E-11		0.0162562	[0.011-0.021] unit decrease	Illumina [13479295] (imputed)	N
1331	chr10	97877319	97877320	rs1172955	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q24.1	ENTPD1-AS1, ZNF518A	rs1172955-?	NR	9E-11		0.022964759	[0.016-0.03] unit decrease	Illumina [27896057] (imputed)	N
1331	chr10	97877319	97877320	rs1172955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q24.1		rs1172955-?	NR	6E-33				NR [~ 8900000] (imputed)	N
1331	chr10	97897751	97897752	rs10882723	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.1	NR	rs10882723-G	0.466	2E-8		0.00607611	[0.004-0.0082] unit increase	NR [9732723] (imputed)	N
1332	chr10	97941021	97941022	rs61856978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q24.1		rs61856978-C	NR	4E-20		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1332	chr10	97941021	97941022	rs61856978	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q24.1	ZNF518A	rs61856978-T	0.66001	6E-13		0.0153763	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
1332	chr10	97957884	97957885	rs2861304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q24.1		rs2861304-A	0.616509	3E-9		0.0221283	[0.015-0.029] unit decrease	Illumina [13476266] (imputed)	N
1332	chr10	97958879	97958880	rs2168733	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q24.1		rs2168733-C	0.685	5E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1332	chr10	97980720	97980721	rs2125062	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	10q24.1	Intergenic	rs2125062-?		6E-6		1.335	[NR]	Affymetrix [492217] (imputed)	N
1332	chr10	97998319	97998320	rs72811035	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.1	NR	rs72811035-?	NR	2E-6		4.773	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1332	chr10	98003383	98003384	rs12356577	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	10q24.1	NR	rs12356577-?	NR	7E-6		0.703429	[0.4-1.01] unit increase	NR [13958389] (imputed)	N
1332	chr10	98014849	98014850	rs35909109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.1	BLNK	rs35909109-T	0.027801	7E-11		0.04423029	[0.031-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1333	chr10	98046835	98046836	rs941997	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	10q24.1	NR	rs941997-T	0.2193	9E-22		0.3481	[0.28-0.42] unit decrease	Affymetrix, Illumina [7565493] (imputed)	N
1333	chr10	98058354	98058355	rs1998409	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	10q24.1	NR	rs1998409-?	NR	2E-17				Affymetrix, Illumina [6210504] (imputed)	N
1333	chr10	98109441	98109442	rs72829508	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 3 years old	5,069 Norwegian ancestry individuals	2,833 Norwegian ancestry individuals	10q24.1	OPALIN	rs72829508-A	0.97	1E-6		0.217	[0.13-0.31] unit increase	Illumina [~ 8500000] (imputed)	N
1333	chr10	98113802	98113803	rs11597348	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	10q24.1	NR	rs11597348-?	NR	4E-7		5.077	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1333	chr10	98135504	98135505	rs10786284	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q24.1	TLL2	rs10786284-?	NR	2E-6				Affymetrix [504219]	N
1333	chr10	98136249	98136250	rs3762096	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	10q24.1	TLL2	rs3762096-A	NR	6E-6		4.521	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1333	chr10	98150309	98150310	rs11596803	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Propionibacterium freudenreichii abundance in stool	5,959 Finnish ancestry individuals	NA	10q24.1		rs11596803-A	0.498815	7E-9		0.0740493	[0.049-0.099] unit decrease	Illumina [7980478] (imputed)	N
1334	chr10	98228430	98228431	rs10882795	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q24.1	TLL2	rs10882795-T	0.171767117980419	2E-7	(G_Aestuariispira_HB)	0.39613	[0.25-0.54] unit increase	Illumina [7711310] (imputed)	N
1334	chr10	98258870	98258871	rs12569424	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.1	NR	rs12569424-?	NR	2E-32				Affymetrix [NR]	N
1334	chr10	98279731	98279732	rs150353338	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TM9SF3	rs150353338-?	NR	7E-9	(female)	5.32899	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1335	chr10	98348594	98348595	rs7071044	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.1	NR	rs7071044-?	NR	4E-6				Affymetrix [NR]	N
1335	chr10	98369754	98369755	rs41317270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q24.1	PIK3AP1	rs41317270-T	0.177074	4E-11		0.019152783	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1335	chr10	98369754	98369755	rs41317270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs41317270-T	0.1603	6E-13				Affymetrix, Illumina [23472807] (imputed)	N
1335	chr10	98369754	98369755	rs41317270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q24.1	NR	rs41317270-T	0.177256	1E-13		0.018469	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1335	chr10	98380136	98380137	rs12784975	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	10q24.1		rs12784975-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1335	chr10	98380136	98380137	rs12784975	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	10q24.1		rs12784975-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1335	chr10	98380136	98380137	rs12784975	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10q24.1		rs12784975-T	0.807	2E-16				Affymetrix [10369434] (imputed)	N
1335	chr10	98380136	98380137	rs12784975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.1	PIK3AP1	rs12784975-C	0.192718	2E-10		0.018038694	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr10	98380136	98380137	rs12784975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q24.1	PIK3AP1	rs12784975-C	0.192852	3E-11		0.01863192	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1335	chr10	98381190	98381191	rs4917743	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	10q24.1	NR	rs4917743-G		6E-6				Illumina [458525]	N
1335	chr10	98417929	98417930	rs7098785	24124408	Hong KW	2013-09-30	Genomics Inform	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NA	10q24.1	PIK3AP1	rs7098785-T	0.361	5E-6	(Delta SBP)	0.9	[NR] mmHg decrease	Affymetrix [333651]	N
1335	chr10	98422895	98422896	rs1023741	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	10q24.1	NR	rs1023741-C	NR	4E-8	(Cox proportional hazards regression model)	18.64	[6.57-52.84]	Illumina [810622]	N
1335	chr10	98432702	98432703	rs7895244	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs7895244-T	0.929057661098705	5E-6	(IGP18)	0.2836	[0.16-0.41] unit increase	Illumina [~ 2500000] (imputed)	N
1336	chr10	98442075	98442076	rs7070359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.1	PIK3AP1	rs7070359-G	0.416357	1E-14		0.017487124	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q24.1		rs45587331-A	NR	5E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q24.1		rs45587331-A	NR	8E-11		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q24.1		rs45587331-A	NR	2E-20		0.0214	[0.017-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	10q24.1		rs45587331-A	0.289561	1E-10		0.0244217	[0.017-0.032] unit increase	Illumina [13478866] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q24.1	PIK3AP1	rs45587331-A	0.19	6E-10		6.19	z-score increase	Affymetrix [4314223] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q24.1	PIK3AP1	rs45587331-?		2E-11		0.0275	[0.019-0.036] unit decrease	Illumina [31500000] (imputed)	N
1336	chr10	98460580	98460581	rs45587331	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	10q24.1	PIK3AP1	rs45587331-?	NR	8E-9		0.02494	[0.016-0.033] unit increase	Illumina [6108953] (imputed)	N
1336	chr10	98466281	98466282	rs61856806	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q24.1	PIK3AP1	rs61856806-T	0.817802	4E-14		0.00376197	[0.0028-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1336	chr10	98466281	98466282	rs61856806	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q24.1	PIK3AP1	rs61856806-A	0.18	1E-14		7.73	z-score increase	Affymetrix [4312306] (imputed)	N
1336	chr10	98470340	98470341	rs12573330	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10q24.1	PIK3AP1	rs12573330-C	0.1832	3E-9		0.02716052	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1336	chr10	98470864	98470865	rs57710486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.1	NR	rs57710486-C	NR	1E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1336	chr10	98470864	98470865	rs57710486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.1	NR	rs57710486-C	NR	7E-12		0.0212	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1336	chr10	98470885	98470886	rs59343228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.1	PIK3AP1	rs59343228-G	0.183166	5E-15		0.022641944	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr10	98537776	98537777	rs35013231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q24.1		rs35013231-C	0.9082188	6E-9		0.022801949	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr10	98550810	98550811	rs12217499	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (stiff neck)	937 Japanese ancestry female cases, 4,797 Japanese ancestry female controls	944 Japanese ancestry female cases, 4,670 Japanese ancestry female controls	10q24.1	NR	rs12217499-A	0.122581358	6E-6		0.26540968	[0.15-0.38] unit decrease	Affymetrix [536506]	N
1336	chr10	98560868	98560869	rs9419827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q24.1	intergenic	rs9419827-A	0.0665	2E-10		0.0264	[0.018-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1337	chr10	98594652	98594653	rs113497890	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	10q24.1	LCOR	rs113497890-?	NR	6E-8	(boys)	3.16	[NR] unit decrease	Illumina [774433] (imputed)	N
1337	chr10	98639845	98639846	rs17112190	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		10q24.1	NR	rs17112190-A	0.11	9E-7	(t11;14 vs. controls)	1.8	[1.42-2.27]	Illumina [414804] (imputed)	N
1337	chr10	98646953	98646954	rs12242141	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10q24.1	LCOR	rs12242141-T	0.9976	2E-6		1.1357	[0.67-1.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1337	chr10	98646953	98646954	rs12242141	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	10q24.1	LCOR	rs12242141-T	0.9976	2E-6		1.1357	[0.67-1.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1338	chr10	98707188	98707189	rs184787123	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	10q24.1	LCOR	rs184787123-?	NR	6E-6		15.8	[4.64-53.9]	Illumina [654642] (imputed)	N
1338	chr10	98735239	98735240	rs7090690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.1		rs7090690-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1338	chr10	98741292	98741293	rs11188980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q24.1		rs11188980-G	NR	2E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1338	chr10	98741292	98741293	rs11188980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q24.1		rs11188980-G	0.211303	2E-9		0.019911	[0.013-0.026] unit decrease	Illumina [13479924] (imputed)	N
1338	chr10	98747752	98747753	rs10399993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.1		rs10399993-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1338	chr10	98794058	98794059	rs12773465	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	10q24.1	SLIT1	rs12773465-G	0.84	2E-7	(drinks/week)	0.159	[0.098-0.220] unit decrease	Affymetrix [2500000] (imputed)	N
1338	chr10	98800098	98800099	rs3824789	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.1	SLIT1	rs3824789-A	0.248	6E-6	(Cystathionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1338	chr10	98808604	98808605	rs528766038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	10q24.1		rs528766038-T	NR	6E-9		0.3462	[0.23-0.46] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
1338	chr10	98809702	98809703	rs7902871	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	10q24.1	SLIT1	rs7902871-G	0.81	1E-6	(drinks/week)	0.12	[0.075-0.165] unit decrease	Affymetrix [2500000] (imputed)	N
1339	chr10	98879660	98879661	rs35425515	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	10q24.1	SLIT1	rs35425515-C	NR	7E-7	(Japanese)	1.5163853	[1.28695491024776-1.78671931532916]	Illumina [at least 6195093] (imputed)	N
1339	chr10	98908732	98908733	rs7072055	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q24.1	NR	rs7072055-C	0.831620998660116	2E-6	(IGP23)	0.2045	[0.12-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1339	chr10	98913139	98913140	rs59474325	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.1	NR	rs59474325-T	0.02439	3E-8	(ALDH7A1)	0.5809	NR unit increase	Illumina [1671387] (imputed)	N
1340	chr10	98966484	98966485	rs10882873	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1	rs10882873-A	0.5853	6E-12		0.02493291	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	98968966	98968967	rs9630089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1	rs9630089-A	0.5726	5E-10		0.02287186	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	98974706	98974707	rs11189037	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q24.1		rs11189037-C	0.37	4E-14		7.56	z score increase	Affymetrix [9061022] (imputed)	N
1340	chr10	98974764	98974765	rs11189038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1, ARHGAP19	rs11189038-A	0.414149	9E-9	(-14 ms)	0.0324938	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1340	chr10	98974764	98974765	rs11189038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1, ARHGAP19	rs11189038-A	0.414149	7E-9	(-16 ms)	0.0324579	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1340	chr10	98974764	98974765	rs11189038	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1, ARHGAP19	rs11189038-A	0.414149	3E-8	(-18 ms)	0.0310497	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1340	chr10	98978044	98978045	rs12357266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1	rs12357266-?	NR	1E-9		0.02713	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1340	chr10	98978044	98978045	rs12357266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	10q24.1	ARHGAP19-SLIT1	rs12357266-?	NR	7E-10		0.03688	[0.025-0.049] unit increase novel	Illumina [6108953] (imputed)	N
1340	chr10	98989453	98989454	rs2297987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.1	NR	rs2297987-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1340	chr10	98998194	98998195	rs8181326	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	10q24.1	ARHGAP19	rs8181326-A	0.6495	1E-15		0.016249152	[0.012-0.02] unit decrease	Illumina [9339358] (imputed)	N
1340	chr10	99001257	99001258	rs11189058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q24.1		rs11189058-A	NR	2E-67		0.0387	[0.034-0.043] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1340	chr10	99001257	99001258	rs11189058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.1		rs11189058-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1340	chr10	99008067	99008068	rs10882880	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10q24.1		rs10882880-G	0.401	4E-11				Affymetrix [10369434] (imputed)	N
1340	chr10	99024153	99024154	rs796980	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	10q24.1		rs796980-G	0.686	5E-9				Affymetrix [10369434] (imputed)	N
1340	chr10	99045889	99045890	rs10882889	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	10q24.1	NR	rs10882889-A	0.45	5E-7	(Asian)	0.08	[0.05-0.11] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1340	chr10	99056920	99056921	rs10736116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs10736116-G	0.602769	2E-14				Affymetrix, Illumina [19872809] (imputed)	N
1340	chr10	99056920	99056921	rs10736116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q24.1	NR	rs10736116-G	0.599451	1E-14		0.015606	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1340	chr10	99056920	99056921	rs10736116	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q24.1	ARHGAP19	rs10736116-C	0.306	9E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1340	chr10	99059644	99059645	rs10882891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q24.1		rs10882891-A	0.656322	4E-14		0.0269453	[0.02-0.034] unit increase	Illumina [13479091] (imputed)	N
1340	chr10	99059644	99059645	rs10882891	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q24.1	NR	rs10882891-C	0.4153	2E-11		0.0313	[0.022-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1340	chr10	99061385	99061386	rs12221430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	10q24.1		rs12221430-G	0.658772	2E-12		0.0343034	[0.025-0.044] unit increase	Illumina [13467171] (imputed)	N
1340	chr10	99065881	99065885	rs35363447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q24.1		rs35363447-A	NR	1E-67		0.035	[0.031-0.039] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1340	chr10	99068737	99068738	rs10786325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs10786325-G	0.603099	4E-127				Affymetrix, Illumina [24649327] (imputed)	N
1340	chr10	99068737	99068738	rs10786325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs10786325-G	0.598064	5E-112				Affymetrix, Illumina [23114412] (imputed)	N
1340	chr10	99068737	99068738	rs10786325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q24.1	NR	rs10786325-G	0.595938	6E-104		0.042348	[0.039-0.046] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1340	chr10	99072506	99072507	rs4919087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs4919087-G	0.5965	8E-43		0.04996724	[0.043-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.580218	5E-19		0.02037219	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.580206	3E-72		0.042097256	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.580202	2E-26		0.024305772	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.58031	1E-13		0.016857587	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5823	6E-43		0.05060343	[0.043-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5821	6E-39		0.04806159	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5821	1E-37		0.04732981	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5821	4E-38		0.04748572	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5821	5E-43		0.05087522	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5821	4E-38		0.0476573	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99073986	99073986	rs397933924	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	10q24.1	RP11-452K12.3	rs397933924-CCAGGTTCAAGCGAT	0.5822	2E-9		0.02160892	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1340	chr10	99074938	99074939	rs10748696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	10q24.1	NR	rs10748696-C	0.23008	6E-13		0.031048	[0.023-0.039] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1340	chr10	99074938	99074939	rs10748696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	10q24.1	NR	rs10748696-C	0.233918	7E-14		0.044643	[0.033-0.056] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
1340	chr10	99074958	99074959	rs10786330	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	10q24.1		rs10786330-A	NR	9E-9		0.0127	[0.0086-0.0168] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1340	chr10	99074958	99074959	rs10786330	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	10q24.1		rs10786330-A	0.6	2E-19		0.008	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1340	chr10	99074958	99074959	rs10786330	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	10q24.1		rs10786330-A	0.58	2E-6		0.012	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1340	chr10	99078482	99078483	rs35717991	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10q24.1		rs35717991-G	0.874	6E-19				Affymetrix [10369434] (imputed)	N
1340	chr10	99083759	99083760	rs6584116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q24.1		rs6584116-G	NR	3E-11		0.0433	[0.031-0.056] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	10q24.1		rs61863767-C	0.403	3E-38				Affymetrix [10369434] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q24.1	FRAT1	rs61863767-T	0.59706	2E-77		0.043099236	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q24.1	FRAT1	rs61863767-T	0.597047	2E-12		0.015898935	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q24.1	NR	rs61863767-T	0.596247	5E-117		0.043116	[0.039-0.047] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs61863767-T	0.598218	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q24.1	NR	rs61863767-T	0.596443	3E-12		0.013439	[0.0097-0.0172] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1340	chr10	99084425	99084426	rs61863767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q24.1		rs61863767-?	NR	6E-70				NR [~ 8900000] (imputed)	N
1340	chr10	99086631	99086632	rs56189004	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q24.1	FRAT1	rs56189004-A	0.697613	3E-12		0.00299838	[0.0022-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
1340	chr10	99089295	99089296	rs7076523	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10q24.1	NR	rs7076523-?		4E-8				NR [7428630] (imputed)	N
1341	chr10	99091368	99091369	rs945187	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q24.1	NR	rs945187-G	0.4199	8E-16		0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1341	chr10	99094435	99094436	rs1890966	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	10q24.1		rs1890966-G	0.669	4E-9				Affymetrix [10369434] (imputed)	N
1341	chr10	99094435	99094436	rs1890966	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q24.1	FRAT2	rs1890966-G	0.669539	2E-10		0.00343101	[0.0024-0.0045] unit decrease	Affymetrix [13995440] (imputed)	N
1341	chr10	99094435	99094436	rs1890966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.1	FRAT2	rs1890966-A	0.330766	2E-35		0.031813562	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1341	chr10	99095944	99095945	rs10882899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q24.1		rs10882899-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1341	chr10	99096675	99096676	rs12569457	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q24.1	FRAT2, RRP12	rs12569457-T	0.193	7E-9	(Japanese)	0.025	[0.017-0.033] unit increase	Illumina [6108953] (imputed)	N
1341	chr10	99097190	99097191	rs4917766	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q24.1	FRAT2	rs4917766-A	0.593	7E-20		0.011	[0.0086-0.0134] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1341	chr10	99098536	99098537	rs10786334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q24.1		rs10786334-T	NR	3E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1341	chr10	99108921	99108922	rs11189154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q24.1		rs11189154-A	NR	7E-74		0.0425	[0.038-0.047] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1341	chr10	99108921	99108922	rs11189154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.1	NR	rs11189154-A	0.257039	5E-132				Affymetrix, Illumina [23467995] (imputed)	N
1341	chr10	99108921	99108922	rs11189154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q24.1	NR	rs11189154-A	0.255718	1E-122		0.050518	[0.046-0.055] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1341	chr10	99109728	99109729	rs1547328	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10q24.1		rs1547328-G	0.745	4E-48				Affymetrix [10369434] (imputed)	N
1341	chr10	99111750	99111751	rs11189156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	10q24.1	NR	rs11189156-T	0.728544	3E-10		0.033722	[0.023-0.044] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1341	chr10	99112785	99112786	rs61863813	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10q24.1		rs61863813-T	0.68	2E-24				Affymetrix [10369434] (imputed)	N
1341	chr10	99115682	99115683	rs10882904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q24.1	RRP12	rs10882904-G	0.322528	3E-14		0.018437322	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr10	99115682	99115683	rs10882904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q24.1	RRP12	rs10882904-G	0.322524	5E-12		0.016746432	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr10	99125721	99125722	rs11189167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.1	RRP12	rs11189167-G	0.255251	3E-50		0.041124895	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr10	99136402	99136403	rs61863818	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10q24.1	RRP12	rs61863818-T	0.2542	4E-16		0.03332382	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1341	chr10	99144153	99144154	rs11189181	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10q24.1	RRP12	rs11189181-G	0.3218	1E-27		0.04169618	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1341	chr10	99154981	99154982	rs7903847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10q24.1	RRP12	rs7903847-C	0.2765	3E-10		0.02538068	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1341	chr10	99159464	99159465	rs10786343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	10q24.1		rs10786343-A	0.273252	1E-8		0.0282507	[0.019-0.038] unit increase	Illumina [13471440] (imputed)	N
1341	chr10	99159669	99159670	rs10882925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.1	RRP12	rs10882925-A	0.258069	6E-33		0.030421717	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1342	chr10	99232949	99232950	rs7073097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10q24.1	MMS19	rs7073097-A	NR	5E-8		0.0190865	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1342	chr10	99262575	99262575	rs10678727	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q24.2		rs10678727-?	NR	2E-6		1.77	[1.40-2.23]	Illumina [6778521] (imputed)	N
1342	chr10	99262575	99262575	rs10678727	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q24.2	EXOSC1, ZDHHC16, MMS19, UBTD12	rs10678727-?	NR	3E-6		1.9		Illumina [6778521] (imputed)	N
1342	chr10	99272003	99272004	rs186856805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q24.2	UBTD1	rs186856805-C	1.0	2E-6	(AA)	0.679	unit increase	Illumina [NR] (imputed)	N
1342	chr10	99280232	99280233	rs4919105	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q24.2	EXOSC1, ZDHHC16, MMS19, UBTD12	rs4919105-?	NR	2E-6		2.02		Illumina [6778521] (imputed)	N
1342	chr10	99293655	99293656	rs7911122	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q24.2	EXOSC1	rs7911122-T	0.7684375	6E-6	(EXOSC1, 7930_3_3)	0.13773842	[0.078-0.197] unit decrease	Illumina [> 1000000] (imputed)	N
1342	chr10	99294796	99294797	rs12767760	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	UBTD1	rs12767760-G	0.364	7E-6	(Total cysteine )	0.02	[NR] umol/L increase	Illumina [899892]	N
1343	chr10	99359411	99359412	rs7078003	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	10q24.2		rs7078003-C	0.821522	9E-83		0.104082	[0.093-0.115] unit decrease	NR [11722792] (imputed)	N
1343	chr10	99359411	99359412	rs7078003	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	10q24.2	HOGA1	rs7078003-T	0.2	3E-10	(Glutamine)	0.07	[0.05-0.09] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1343	chr10	99359738	99359739	rs2297644	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	10q24.2	DHDPSL	rs2297644-?	NR	1E-12	(Gln, His)	0.15	[0.11-0.19] unit increase	Illumina [~ 7700000] (imputed)	N
1343	chr10	99359924	99359925	rs185803104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	10q24.2		rs185803104-G	0.99698	1E-8		0.213455	[0.14-0.29] unit increase	NR [11722792] (imputed)	N
1343	chr10	99378060	99378061	rs531105783	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	10q24.2	MORN4	rs531105783-A	0.0036	1E-7		0.0606	NR	Affymetrix, Illumina [30341632] (imputed)	N
1343	chr10	99464865	99464866	rs7913179	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		10q24.2	NR	rs7913179-?	0.933	1E-8	(EA, men)			Illumina [at least 550000] (imputed)	N
1344	chr10	99523246	99523248	rs35404815	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	10q24.2	NR	rs35404815-G	0.1103	4E-6		0.2209	[0.13-0.31] unit decrease	Illumina [10677593] (imputed)	N
1344	chr10	99559720	99559721	rs7903338	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	10q24.2	NR	rs7903338-C	0.9789989	4E-8		0.3463	[0.22-0.47] unit decrease	Illumina [up to 1980188] (imputed)	N
1344	chr10	99562571	99562572	rs11816631	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	10q24.2	SFRP5, GOLGA7B	rs11816631-G	0.06	3E-7	(EA, PP, Age 40-49)	1.99	[1.23-2.75] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1344	chr10	99594464	99594465	rs1417005	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00866	rs1417005-?	NR	1E-8	(female)	2.13838	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1344	chr10	99600366	99600367	rs872570	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	10q24.2	NR	rs872570-G	0.44	1E-6		1.07	[1.05-1.09]	Illumina [8468885] (imputed)	N
1344	chr10	99601055	99601056	rs12778290	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAC1	5,351 Icelandic ancestry individuals	NA	10q24.2		rs12778290-T	0.1376	4E-17		0.216898	[0.17-0.27] unit decrease	Illumina [7506463] (imputed)	N
1345	chr10	99637577	99637578	rs531676	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	10q24.2	CRTAC1	rs531676-?	0.45	9E-6	(T2D)			Illumina [308011]	N
1345	chr10	99638182	99638183	rs3793695	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q24.2	CRTAC1	rs3793695-T	0.376051	8E-6		1.272	[1.145 - 1.413]	Illumina [5397362] (imputed)	N
1345	chr10	99638182	99638183	rs3793695	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q24.2	AL139239.1	rs3793695-T	0.376051	8E-6		1.272	[1.145 - 1.413]	Illumina [5397362] (imputed)	N
1345	chr10	99640462	99640463	rs11599481	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	10q24.2	SFRP5, CRTAC1	rs11599481-?	NR	7E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1345	chr10	99640462	99640463	rs11599481	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q24.2	SFRP5, CRTAC1	rs11599481-?		5E-11	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1345	chr10	99640462	99640463	rs11599481	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q24.2	SFRP5, CRTAC1	rs11599481-?	NR	3E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1345	chr10	99642730	99642731	rs588061	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAC1	5,351 Icelandic ancestry individuals	NA	10q24.2		rs588061-T	0.4777	4E-62		0.290262	[0.26-0.32] unit decrease	Illumina [7506463] (imputed)	N
1345	chr10	99642730	99642731	rs588061	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q24.2	CRTAC1	rs588061-C	0.52875	9E-47	(CRTAC1, 5632_6_3)	0.34594724	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
1345	chr10	99649530	99649531	rs12412747	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	10q24.2	CRTAC1	rs12412747-?	NR	9E-6		1.1713264	[1.09-1.26]	Illumina [5842835] (imputed)	N
1345	chr10	99673182	99673183	rs60280813	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	10q24.2	CRTAC1	rs60280813-C	0.047817496	9E-8		1.5677797	[1.329726515-1.848450189]	Illumina [10439017] (imputed)	N
1345	chr10	99695193	99695194	rs474558	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	10q24.2	NR	rs474558-A	0.2	5E-6		1.17		Illumina [803202]	N
1345	chr10	99698797	99698798	rs61875762	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.2	NR	rs61875762-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1345	chr10	99699027	99699028	rs58242881	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q24.2		rs58242881-A	0.17	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr10	99712133	99712134	rs2477674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q24.2	Intergenic	rs2477674-A	0.3261	3E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr10	99712133	99712134	rs2477674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.2	Intergenic	rs2477674-A	0.3258	3E-11	(MTAG)	0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr10	99719286	99719287	rs112152131	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q24.2	CRTAC1	rs112152131-C	0.014797230976185	1E-6	(G_Ruminococcus_RNT)	0.588812	[0.35-0.83] unit increase	Illumina [7711310] (imputed)	N
1345	chr10	99723622	99723623	rs117920745	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	10q24.2		rs117920745-A	0.01363	8E-7		4.377	[2.435-7.867]	Affymetrix [7975321] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs12357890-A	0.442785	1E-8		0.0235745	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs12357890-A	0.442785	2E-8		0.0231358	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs12357890-A	0.442785	1E-9		0.0247656	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q24.2		rs12357890-G	NR	1E-15		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q24.2		rs12357890-G	NR	2E-13		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q24.2		rs12357890-G	NR	5E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	10q24.2	NR	rs12357890-G	NR	5E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q24.2	CRTAC1	rs12357890-A	0.442815	2E-18		0.0121927	[0.0095-0.0149] unit decrease	Affymetrix [12370749]	N
1346	chr10	99762692	99762693	rs12357890	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q24.2	CRTAC1	rs12357890-A	0.443073	6E-9		0.0115686	[0.0077-0.0155] unit increase	Affymetrix [NR] (imputed)	N
1346	chr10	99762692	99762693	rs12357890	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q24.2	NR	rs12357890-A	0.441773	6E-12		0.0145353	[0.01-0.019] unit decrease	NR [NR]	N
1346	chr10	99767023	99767024	rs482787	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.2		rs482787-T	0.6749	2E-11		0.01	[0.0071-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1346	chr10	99769387	99769388	rs577525	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q24.2	CRTAC1	rs577525-T	0.438094	3E-13		0.0140698	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1346	chr10	99769387	99769388	rs577525	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	10q24.2	NR	rs577525-T	0.4349	2E-12		0.017668257	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1346	chr10	99772189	99772190	rs565108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q24.2		rs565108-T	0.444165	8E-11		0.0255987	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772189	99772190	rs565108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q24.2		rs565108-T	0.444165	2E-9		0.0238284	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772189	99772190	rs565108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs565108-T	0.444165	1E-9		0.0240808	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772189	99772190	rs565108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q24.2		rs565108-T	0.444165	3E-9		0.0238925	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1346	chr10	99772189	99772190	rs565108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q24.2		rs565108-T	0.444165	4E-9		0.0231736	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1346	chr10	99772189	99772190	rs565108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q24.2		rs565108-C	NR	4E-12		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1346	chr10	99772313	99772313	rs5787266	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	10q24.2		rs5787266-G	0.443095	3E-9		0.0239904	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q24.2		rs563296-G	0.442464	5E-9		0.0228528	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	10q24.2		rs563296-G	0.442451	2E-10		0.0255778	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	10q24.2		rs563296-G	0.442481	1E-8		0.0225755	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q24.2		rs563296-G	0.442481	1E-9		0.0243088	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q24.2		rs563296-G	0.442451	5E-8		0.0215936	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1346	chr10	99772403	99772404	rs563296	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q24.2	CRTAC1	rs563296-G	0.443019	6E-16		0.0162446	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1346	chr10	99772403	99772404	rs563296	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	10q24.2	CRTAC1	rs563296-G	0.44029	2E-10		0.0419399	[0.029-0.055] unit decrease	Affymetrix [9463307] (imputed)	N
1346	chr10	99772403	99772404	rs563296	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q24.2	NA	rs563296-A	0.5574	9E-22		0.0168	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1346	chr10	99772403	99772404	rs563296	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	10q24.2	CRTAC1	rs563296-A	0.5598	3E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	1E-10		0.0256137	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	2E-9		0.0245077	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	2E-10		0.0256869	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	2E-10		0.0256344	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	2E-9		0.0239414	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	1E-8		0.0233077	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	2E-9		0.0238363	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	1E-8		0.0229395	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772520	99772521	rs525651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs525651-T	0.445513	8E-10		0.0248628	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-10		0.0251988	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	6E-10		0.0248089	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-10		0.0255046	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	9E-10		0.0246513	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-9		0.0243871	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	9E-10		0.0244607	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-8		0.0227026	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	4E-8		0.0219198	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-10		0.0253575	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	4E-9		0.0238657	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-8		0.022601	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	1E-10		0.025867	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-8		0.0231502	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	3E-10		0.0252903	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	4E-8		0.0220263	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	6E-10		0.0251566	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	10q24.2		rs522110-A	0.444689	5E-10		0.0239257	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	1E-10		0.0256366	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	9E-11		0.0259289	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	10q24.2		rs522110-A	0.444689	7E-10		0.0252089	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-8		0.0229296	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	5E-11		0.0261572	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	2E-10		0.025614	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	5E-8		0.0224914	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	3E-9		0.0237394	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	10q24.2		rs522110-A	0.44466	9E-9		0.0222468	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1346	chr10	99772884	99772885	rs522110	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	10q24.2		rs522110-G	0.56	3E-17		0.016	mmol/L increase	NR [NR] (imputed)	N
1346	chr10	99772884	99772885	rs522110	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	10q24.2		rs522110-G	0.56	1E-7		0.01	nmol/L decrease	NR [NR] (imputed)	N
1346	chr10	99772884	99772885	rs522110	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q24.2		rs522110-G	0.56	7E-17				NR [NR] (imputed)	N
1346	chr10	99772884	99772885	rs522110	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	10q24.2		rs522110-G	0.56	3E-14		0.013	mmol/L decrease	NR [NR] (imputed)	N
1346	chr10	99772884	99772885	rs522110	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q24.2		rs522110-G	0.56	9E-19		0.013	% increase	NR [NR] (imputed)	N
1346	chr10	99772884	99772885	rs522110	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.2	NR	rs522110-?	NR	6E-23				Affymetrix [~ 8270000] (imputed)	N
1346	chr10	99778225	99778226	rs2439823	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10q24.2	CRTAC1	rs2439823-A	NR	1E-8		0.0072029	[0.0047-0.0097] unit increase	Affymetrix [10061374] (imputed)	N
1346	chr10	99778225	99778226	rs2439823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.2		rs2439823-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1346	chr10	99778225	99778226	rs2439823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q24.2	NA	rs2439823-A	0.4514	7E-22		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1346	chr10	99778225	99778226	rs2439823	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	10q24.2	CRTAC1	rs2439823-G	0.55	3E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1346	chr10	99784552	99784554	rs112213274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q24.2		rs112213274-C	NR	5E-19		0.0213	[0.017-0.026] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1346	chr10	99790397	99790398	rs61873668	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	10q24.2	NR	rs61873668-G	0.16679	2E-6		0.1112913	[0.07-0.16] unit decrease	Illumina [9469131] (imputed)	N
1346	chr10	99798233	99798234	rs10883027	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10q24.2	NA	rs10883027-C	0.5233	7E-22		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1346	chr10	99807045	99807046	rs1372691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.2	NR	rs1372691-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1346	chr10	99809914	99809915	rs1889443	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q24.2	NR	rs1889443-G	0.185	3E-6		0.36	[0.2-0.52] unit decrease	Illumina [9469131] (imputed)	N
1346	chr10	99818019	99818020	rs12411809	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.2	NR	rs12411809-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1346	chr10	99831337	99831338	rs185315165	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Stent thrombosis in response to clopidogrel treatment	37 European ancestry cases, 2,542 European ancestry controls	NA	10q24.2	ABCC2, NANOGP6, DNMBP	rs185315165-A	0.997048	1E-6		38.516624	NR	Illumina [5009928] (imputed)	N
1346	chr10	99861311	99861312	rs10786387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.2	NR	rs10786387-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1346	chr10	99868029	99868030	rs58973706	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	10q24.2		rs58973706-G	0.01479	8E-8		4.565	[2.622-7.949]	Affymetrix [7975321] (imputed)	N
1347	chr10	99913131	99913132	rs11189494	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	10q24.2	R3HCC1L	rs11189494-?	NR	7E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
1347	chr10	99926270	99926271	rs7071239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	10q24.2		rs7071239-A	NR	9E-10		0.0673	[0.046-0.089] unit decrease	Affymetrix, Illumina [25844227] (imputed)	N
1347	chr10	99969567	99969568	rs11189513	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q24.2	NR	rs11189513-A	NR	6E-8		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1348	chr10	100013814	100013815	rs878177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.2		rs878177-?	NR	5E-22				NR [~ 8900000] (imputed)	N
1348	chr10	100016338	100016339	rs1983865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q24.2		rs1983865-T	NR	5E-19		0.0119	[0.0094-0.0144] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1348	chr10	100017452	100017453	rs1983864	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q24.2		rs1983864-T	0.6596	2E-16		0.13678241	[0.1-0.17] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1348	chr10	100017452	100017453	rs1983864	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	10q24.2	NR	rs1983864-G	0.34012166093626	6E-6				NR [9276018] (imputed)	N
1348	chr10	100017452	100017453	rs1983864	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	10q24.2	LOXL4, R3HCC1L	rs1983864-T	0.6605	8E-16		0.0148	[0.011-0.018] unit increase	Illumina [246328]	N
1348	chr10	100026790	100026791	rs7090035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q24.2		rs7090035-C	NR	8E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1348	chr10	100027986	100027987	rs61875311	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q24.2	LOXL4	rs61875311-?	NR	2E-8		0.017731855	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
1348	chr10	100049478	100049479	rs4919206	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	10q24.2	LOXL4	rs4919206-G	0.51	4E-6		1.369863		Illumina [4903804] (imputed)	N
1348	chr10	100053880	100053881	rs75822602	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	10q24.2	LOXL4	rs75822602-T	0.033	6E-6	(EA)	0.263	[0.15-0.38] unit increase	Illumina [NR] (imputed)	N
1348	chr10	100091760	100091761	rs10786411	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to levetiracetam in focal epilepsy	258 European ancestry cases, 678 European ancestry controls	NA			rs10786411-?	NR	4E-6				Illumina [NR] (imputed)	N
1348	chr10	100111391	100111392	rs4919218	30273415	Hatzikotoulas K	2018-05-31	Commun Biol	Genome-wide association study of developmental dysplasia of the hip identifies an association with GDF5.	Developmental dysplasia of the hip	770 European ancestry cases, 3,364 European ancestry controls	1,129 European ancestry cases, 4,652 European ancestry controls	10q24.2	NR	rs4919218-C	0.69	4E-6		1.19	[1.10-1.28]	Illumina [256867]	N
1348	chr10	100123611	100123612	rs11814584	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.2	LOXL4, PYROXD2	rs11814584-T	0.869715	4E-62	(N-methylpipecolate)	0.541	[0.48-0.6] unit increase	Illumina [13039987] (imputed)	N
1348	chr10	100127550	100127551	rs17109512	21900944	Shen H	2011-09-08	J Hum Genet	Genome-wide association study identifies genetic variants in GOT1 determining serum aspartate aminotransferase levels.	Aspartate aminotransferase levels	866 Old Order Amish individuals	NA		GOT1	rs17109512-?	0.006	3E-14				Affymetrix [373825]	N
1349	chr10	100143192	100143193	rs7905265	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs7905265-G	0.38	7E-81	(N-methylpipecolate)	1.064	[0.95-1.17] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100146083	100146084	rs11598867	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	10q24.2	PYROXD2	rs11598867-A	0.3	1E-307	(2.854 ppm)	0.3727	[NR] unit decrease	Affymetrix [620456]	N
1349	chr10	100147059	100147060	rs4345897	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs4345897-A	0.34	4E-12	(1.7775, Unknown)	0.27	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100147059	100147060	rs4345897	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs4345897-A	0.34	2E-19	(2.8825, Trimethylamine)	0.34	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100147059	100147060	rs4345897	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	10q24.2	PYROXD2	rs4345897-G	NR	2E-91	(Caprolactam)			Affymetrix [333722]	N
1349	chr10	100148057	100148058	rs4539242	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs4539242-T	0.35	2E-20	(1.8025, Unknown)	0.35	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	N6-methyllysine levels	291 European ancestry individuals	NA	10q24.2		rs2147896-A	0.6299	3E-198		0.6467	unit increase	Illumina [7049691] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	Trimethylamine levels	996 European ancestry individuals	NA	10q24.2		rs2147896-G	0.3637	4E-144		1.0238446	unit decrease	Illumina [283704]	N
1349	chr10	100148175	100148176	rs2147896	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.2	PYROXD2	rs2147896-A	0.425497	4E-226	(N-methylpipecolate)	0.715	[0.67-0.76] unit increase	Illumina [13039987] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.2	PYROXD2	rs2147896-A	0.425497	1E-15	(arginine)	0.19	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs2147896-G	0.36	3E-917	(X-12093, X-12112, X-23776, X-24809, X-24983)	0.03	[0.028-0.032] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs2147896-G	0.36	4E-574	(X - 24809)	1.82	[1.75-1.89] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs2147896-G	0.36	3E-520	(X - 24983)	1.103	[1.06-1.15] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs2147896-G	0.36	2E-309	(X - 12093)	1.3	[1.23-1.37] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs2147896-A	0.35	8E-30	(2.8625, Trimethylamine)	0.42	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs2147896-A	0.35	6E-19	(2.8775, Trimethylamine)	0.36	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs2147896-A	0.35	4E-34	(2.7125, Unknown)	0.44	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs2147896-A	0.35	3E-164	(2.8575, Trimethylamine)	0.85	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148175	100148176	rs2147896	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs2147896-A	0.35	2E-55	(2.8675, Trimethylamine)	0.57	[NR] unit decrease	Illumina [713870] (imputed)	N
1349	chr10	100148529	100148530	rs145054109	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.2	NR	rs145054109-?	NR	9E-6		4.434	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1349	chr10	100152372	100152373	rs6584192	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.2	HPS1	rs6584192-?	NR	4E-33	(asymmetric dimethylarginine)	0.41370013	[0.35-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1349	chr10	100153607	100153608	rs942813	31641590	Stevelink R	2019-10-11	Mol Genet Metab Rep	Assessing the genetic association between vitamin B6 metabolism and genetic generalized epilepsy.	Plasma pyridoxal phosphate to pyridoxal ratio	2,232 Irish ancestry individuals	NA	10q24.2	PYROXD2	rs942813-?	NR	4E-8				NR [~ 6000000] (imputed)	N
1349	chr10	100156852	100156853	rs7072216	21931564	Nicholson G	2011-09-08	PLoS Genet	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	10q24.2	PYROXD2, C10orf33	rs7072216-C	NR	8E-15	(TMAu)	1.19	[0.95-1.43] unit decrease	Illumina [2541644] (imputed)	N
1349	chr10	100159135	100159136	rs4488133	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs4488133-T	0.36	2E-209	(X - 23776)	1.155	[1.08-1.23] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100159135	100159136	rs4488133	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q24.2	PYROXD2	rs4488133-T	0.36	1E-234	(X - 12112)	1.461	[1.37-1.55] unit decrease	Illumina [7750367] (imputed)	N
1349	chr10	100159135	100159136	rs4488133	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.2	PYROXD2	rs4488133-A	0.7	1E-48	(X-12093)	0.099	[0.085-0.113] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1349	chr10	100159135	100159136	rs4488133	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.2	PYROXD2	rs4488133-A	0.66	3E-860	(X-12092)	0.282	[0.27-0.29] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1349	chr10	100159135	100159136	rs4488133	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q24.2	PYROXD2	rs4488133-?	NR	2E-281	(X-12092)	0.2842	[NR] unit decrease	Affymetrix [655658]	N
1349	chr10	100159135	100159136	rs4488133	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	10q24.2	PYROXD2	rs4488133-?	NR	1E-27	(X-12093)	0.1252	[NR] unit decrease	Affymetrix [655658]	N
1349	chr10	100162638	100162639	rs57564578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q24.2		rs57564578-A	NR	3E-10		0.0258	[0.018-0.034] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1349	chr10	100164441	100164442	rs7901577	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.2	PYROXD2	rs7901577-A	0.648497	3E-89	(N-methylpipecolate)	0.453	[0.41-0.5] unit increase	Illumina [13039987] (imputed)	N
1349	chr10	100165996	100165997	rs17455577	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	10q24.2	PYROXD2	rs17455577-C	0.31	3E-22	(2.8725, Trimethylamine)	0.45	[NR] unit increase	Illumina [713870] (imputed)	N
1349	chr10	100170382	100170383	rs6584202	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	HPS1, PYROXD2	rs6584202-A	0.367	4E-7	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
1349	chr10	100179850	100179851	rs2296436	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q24.2	NR	rs2296436-C	0.08461	9E-12		0.002759	[0.002-0.0036] unit decrease	Affymetrix [NR] (imputed)	N
1349	chr10	100197431	100197432	rs11189604	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	10q24.2	HPS1	rs11189604-A	0.9523	2E-6		0.018	[0.011-0.025] unit increase	Affymetrix [~ 7740000] (imputed)	N
1349	chr10	100217807	100217808	rs4917833	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q24.2	NR	rs4917833-T	0.433	5E-6		0.157993	[0.09-0.226] unit decrease	Illumina [~ 6600000] (imputed)	N
1349	chr10	100240373	100240374	rs72838936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10q24.2	NR	rs72838936-?	NR	3E-10		0.06271	[0.043-0.082] unit decrease novel	Illumina [6108953] (imputed)	N
1350	chr10	100291175	100291176	rs577969	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q24.2	intergenic	rs577969-T	0.05	4E-6		1.13	[1.07-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1350	chr10	100300181	100300182	rs10786436	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	10q24.2	NR	rs10786436-T	NR	8E-7		1.1	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
1350	chr10	100300554	100300555	rs534706838	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q24.2	NR	rs534706838-?	NR	9E-6		1.47768	[0.83-2.13] unit increase	NR [13958389] (imputed)	N
1351	chr10	100421840	100421841	rs524903	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q24.2	NR	rs524903-G	0.8164	2E-10		0.0428	[0.03-0.056] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1352	chr10	100580122	100580123	rs17470570	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q24.2	intergenic	rs17470570-G	0.08	3E-6		1.2	[1.11-1.30]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1352	chr10	100583914	100583915	rs2801405	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	HPSE2	rs2801405-G	0.33	9E-6	(Urinary free norepinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1352	chr10	100646180	100646181	rs11189853	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q24.2	intergenic	rs11189853-G	0.13	2E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1352	chr10	100655671	100655672	rs151000659	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q24.2		rs151000659-?	NR	3E-6		1.5665317	[0.91-2.22] unit decrease	Illumina [9875426] (imputed)	N
1352	chr10	100660300	100660301	rs978851	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	10q24.2	NR	rs978851-?	NR	2E-8				NR [up to 7000000]	N
1352	chr10	100660300	100660301	rs978851	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	10q24.2	NR	rs978851-?	NR	6E-9				NR [up to 7000000]	N
1353	chr10	100670905	100670906	rs17471911	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	10q24.2	NR	rs17471911-A	0.943	9E-6		0.033590786	[0.019-0.048] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1353	chr10	100682447	100682448	rs11189867	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	10q24.2	HPSE2	rs11189867-?		7E-6	(AA)	26.8	[NR]	Illumina [936149]	N
1353	chr10	100702736	100702737	rs12260159	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	10q24.2	HPSE2	rs12260159-?	0.93	3E-10		1.0869565	[1.06-1.12]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1353	chr10	100767208	100767209	rs4919267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs4919267-T	NR	8E-12		0.0281	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1354	chr10	100811849	100811850	rs7097660	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q24.2	HPSE2	rs7097660-G	0.77	1E-12		7.11	z-score increase	Affymetrix [4314223] (imputed)	N
1354	chr10	100855701	100855702	rs12570188	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	10q24.2	HPSE2	rs12570188-?	NR	5E-8				Affymetrix [786195]	N
1354	chr10	100856452	100856453	rs12780046	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	10q24.2	NR	rs12780046-T	0.09	4E-6		1.29	[1.16-1.44]	Illumina [at least 8427548] (imputed)	N
1356	chr10	101090206	101090207	rs1399292710	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	10q24.2		rs1399292710-?	NR	4E-16		1.62294	[1.22-2.03] unit decrease	NR [9800000] (imputed)	N
1356	chr10	101121717	101121718	rs11190074	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q24.2	CNNM1	rs11190074-G	0.09	9E-8	(AA)	7.36	[6.14-8.58]	Illumina [905956]	N
1356	chr10	101125175	101125176	rs41444048	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.2	NR	rs41444048-?	NR	2E-33				Affymetrix [NR]	N
1356	chr10	101130162	101130163	rs1892510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs1892510-C	NR	1E-13		0.0313	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1356	chr10	101132281	101132282	rs10509735	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q24.2	CNNM1	rs10509735-?		5E-24		0.0388	[0.031-0.046] unit increase	Illumina [31500000] (imputed)	N
1356	chr10	101132281	101132282	rs10509735	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10q24.2	CNNM1	rs10509735-?	NR	1E-25		0.04072	[0.033-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1356	chr10	101138525	101138526	rs7069535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs7069535-A	NR	4E-11		0.0251	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1356	chr10	101157378	101157381	rs749913156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q24.2		rs749913156-C	NR	4E-368		2.3454	[2.23-2.46] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1356	chr10	101157378	101157381	rs749913156	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	10q24.2		rs749913156-?	NR	1E-609		2.52126	[2.43-2.62] unit decrease	NR [9800000] (imputed)	N
1356	chr10	101157437	101157438	rs76850691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	10q24.2		rs76850691-C	0.012507	3E-240		0.515929	[0.49-0.55] unit decrease	Illumina [13478956] (imputed)	N
1356	chr10	101157437	101157438	rs76850691	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Aspartate aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	10q24.2	GOT1	rs76850691-C	0.013	9E-10		0.151	[0.1-0.2] unit decrease	Affymetrix [at least 805769] (imputed)	N
1356	chr10	101157437	101157438	rs76850691	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	10q24.2	GOT1	rs76850691-C	0.019	9E-7		0.099	[0.06-0.138] unit decrease	Illumina [747076]	N
1356	chr10	101163626	101163627	rs147376283	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	10q24.2		rs147376283-?	NR	1E-46		1.54969	[1.33-1.77] unit decrease	NR [9800000] (imputed)	N
1356	chr10	101165894	101165895	rs781196751	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	10q24.2		rs781196751-?	NR	3E-14		0.653487	[0.49-0.82] unit increase	NR [9800000] (imputed)	N
1356	chr10	101165951	101165952	rs146049867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs146049867-T	NR	1E-15		0.3277	[0.25-0.41] unit decrease	Affymetrix [9000000] (imputed)	N
1356	chr10	101165951	101165952	rs146049867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs146049867-T	NR	8E-45		0.5761	[0.5-0.66] unit decrease	Affymetrix [9000000] (imputed)	N
1356	chr10	101178055	101178056	rs11819158	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q24.2	NR	rs11819158-?	NR	1E-6	(AA)	8.05	[6.5-9.6]	Illumina [905956]	N
1356	chr10	101180382	101180383	rs371032231	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	10q24.2		rs371032231-?	NR	2E-12		1.63453	[1.19-2.08] unit decrease	NR [9800000] (imputed)	N
1356	chr10	101180635	101180636	rs11813054	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.2	NR	rs11813054-?	NR	8E-8				Affymetrix [NR]	N
1357	chr10	101246157	101246158	rs61872663	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q24.2	NKX2-3	rs61872663-T	0.0196980071618011	2E-6	(F_Acidaminococcaceae_RNT)	0.483244	[0.28-0.68] unit increase	Illumina [7711310] (imputed)	N
1357	chr10	101246529	101246530	rs12253147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs12253147-C	NR	2E-31		0.0451	[0.037-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1357	chr10	101252384	101252385	rs12261266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q24.2		rs12261266-G	0.110314	4E-9		0.021158617	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101252384	101252385	rs12261266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.2		rs12261266-G	0.110373	9E-11		0.023114672	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101254508	101254515	rs113608714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q24.2		rs113608714-C	0.107593	2E-9		0.021507757	[0.014-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101256107	101256108	rs10883353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q24.2		rs10883353-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1357	chr10	101259460	101259461	rs182734535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs182734535-G	0.897779	9E-14				Affymetrix, Illumina [22063850] (imputed)	N
1357	chr10	101271788	101271789	rs11190126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs11190126-C	0.408599	2E-12				Affymetrix, Illumina [19905671] (imputed)	N
1357	chr10	101271981	101271982	rs11190127	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	10q24.2	NR	rs11190127-?	NR	5E-8				Affymetrix, Illumina [6210360] (imputed)	N
1357	chr10	101271981	101271982	rs11190127	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	10q24.2	NR	rs11190127-A	0.3786	4E-10		0.2484	[0.17-0.33] unit increase	Affymetrix, Illumina [7568033] (imputed)	N
1357	chr10	101271981	101271982	rs11190127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q24.2		rs11190127-A	0.372092	2E-17		0.019925559	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101273545	101273546	rs61872688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q24.2	NR	rs61872688-A	0.381444	1E-9		0.012867	[0.0087-0.017] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1357	chr10	101274032	101274033	rs10883359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q24.2		rs10883359-G	0.449408	7E-20		0.0331309	[0.026-0.04] unit increase	Illumina [13476266] (imputed)	N
1357	chr10	101274032	101274033	rs10883359	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.2		rs10883359-A	0.716	5E-27		0.13	[-0.16--0.11] % decrease	Affymetrix [NR] (imputed)	N
1357	chr10	101274032	101274033	rs10883359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q24.2		rs10883359-G	0.284205	1E-11		0.016751388	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101274032	101274033	rs10883359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	10q24.2	NR	rs10883359-A	0.553288	1E-17		0.035415	[0.027-0.044] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1357	chr10	101274032	101274033	rs10883359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	10q24.2	NR	rs10883359-A	0.553292	2E-16		0.034251	[0.026-0.042] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1357	chr10	101274364	101274365	rs7078219	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	10q24.2	NKX2-3	rs7078219-?	NR	6E-6	(DMFS5mand)			Illumina [518997]	N
1357	chr10	101274424	101274425	rs7095953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	10q24.2		rs7095953-C	0.448701	9E-17		0.0261801	[0.02-0.032] unit decrease	Illumina [13479135] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.2		rs7095953-C	0.284181	6E-36		0.031360682	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q24.2		rs7095953-C	0.284118	4E-11		0.016358566	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q24.2		rs7095953-C	0.284182	4E-16		0.020009661	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs7095953-C	0.314582	2E-25				Affymetrix, Illumina [24588908] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q24.2	NR	rs7095953-C	0.285674	2E-26		0.021588	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	10q24.2	NKX2-3	rs7095953-C	NR	2E-7	(East Asian)	0.047	NR unit decrease	Illumina [6407959] (imputed)	N
1357	chr10	101274424	101274425	rs7095953	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	10q24.2	NKX2-3	rs7095953-C	NR	1E-8		0.042	NR unit decrease	Illumina [6407959] (imputed)	N
1357	chr10	101275148	101275149	rs11190128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q24.2		rs11190128-C	NR	2E-15		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1357	chr10	101275148	101275149	rs11190128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q24.2	NR	rs11190128-C	0.284161	1E-12		0.01764441	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101275148	101275149	rs11190128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	10q24.2	NR	rs11190128-A	0.554848	5E-15		0.028923	[0.022-0.036] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1357	chr10	101276255	101276256	rs12412214	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q24.2	GOT1, LINC01475	rs12412214-?	NR	4E-13		0.03102	[0.023-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1357	chr10	101277815	101277816	rs7096296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	10q24.2		rs7096296-T	0.604278	4E-11		0.0296171	[0.021-0.038] unit decrease	Illumina [13471440] (imputed)	N
1357	chr10	101278054	101278055	rs6584277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q24.2		rs6584277-G	0.612947	4E-11		0.0229683	[0.016-0.03] unit decrease	Illumina [13479091] (imputed)	N
1357	chr10	101278098	101278099	rs6584278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs6584278-T	0.422933	2E-22				Affymetrix, Illumina [24649327] (imputed)	N
1357	chr10	101278724	101278725	rs11190133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.2		rs11190133-T	0.284323	2E-35		0.031015765	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101278724	101278725	rs11190133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	10q24.2	intergenic	rs11190133-T	0.2842	4E-10		0.02528815	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101278724	101278725	rs11190133	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q24.2	RP11-129J12.1	rs11190133-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
1357	chr10	101278724	101278725	rs11190133	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	10q24.2	NKX2-3	rs11190133-C	0.707	5E-14		1.15		Illumina [128935]	N
1357	chr10	101278724	101278725	rs11190133	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	10q24.2	NKX2-3	rs11190133-C	0.707	2E-14	(EA)	1.18		Illumina [128935]	N
1357	chr10	101280278	101280279	rs17094148	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	10q24.2	NR	rs17094148-G	0.2933	3E-8		0.18	[0.12-0.24] unit increase	Affymetrix, Illumina [7568149] (imputed)	N
1357	chr10	101280278	101280279	rs17094148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q24.2		rs17094148-G	0.284355	1E-29		0.028332349	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101281157	101281158	rs10883360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q24.2	NR	rs10883360-G	0.382009	6E-18		0.016273	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1357	chr10	101282199	101282200	rs11190134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q24.2		rs11190134-A	NR	4E-16		0.0163	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1357	chr10	101282199	101282200	rs11190134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q24.2	RP11-129J12.1	rs11190134-A	0.380833	9E-10		0.013944648	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101282199	101282200	rs11190134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q24.2		rs11190134-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1357	chr10	101282199	101282200	rs11190134	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	10q24.2	NKX2-3	rs11190134-G	0.6	1E-10	(EA, MCH)	0.011	[0.0032-0.0188] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1357	chr10	101282604	101282604	rs11403745	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	10q24.2	NR	rs11403745-C	0.48	2E-11		1.12	[NR]	NR [8546065] (imputed)	N
1357	chr10	101283327	101283330	rs71485777	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.2	NR	rs71485777-?	NR	1E-36	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	10q24.2		rs10748781-A	NR	5E-10		0.1237	[0.085-0.163] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	10q24.2		rs10748781-A	NR	2E-10		0.0567	[0.039-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	10q24.2		rs10748781-A	NR	7E-9		0.0592	[0.039-0.079] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	10q24.2	GOT1, LINC01475	rs10748781-A	0.579526861721876	6E-35		0.0584	[0.049-0.068] SD decrease	Illumina [22400000] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	10q24.2	NKX2-3	rs10748781-C	0.425	8E-12		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10q24.2	RP11-129J12.2	rs10748781-C	0.434051	7E-9		0.053942885	[0.036-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10q24.2		rs10748781-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	10q24.2		rs10748781-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	10q24.2	GOT1, NKX2-3	rs10748781-?	NR	1E-10		1.088	[1.060-1.116]	Illumina [13676411] (imputed)	N
1357	chr10	101283329	101283330	rs10748781	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	10q24.2	NKX2-3	rs10748781-?	NR	6E-51	(subset analysis)			Illumina [130052]	N
1357	chr10	101283329	101283330	rs10748781	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.2	NR	rs10748781-?	NR	2E-63	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	10q24.2	NKX2-3	rs4409764-?		2E-21				Illumina [9578670] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q24.2	NKX2-3	rs4409764-?		2E-34				Illumina [9725440] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q24.2	NKX2-3	rs4409764-?		2E-24				Illumina [9560910] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.2	NR	rs4409764-A	0.4821	2E-36	(EA)	1.1710649	[1.15-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.2	NR	rs4409764-A	0.4821	6E-47	(EA)	1.1889576	[1.17-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	10q24.2	NKX2-3	rs4409764-T	0.46	8E-8		1.32	[1.19-1.46]	Illumina [549616] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	10q24.2	NKX2-3	rs4409764-T	0.491	1E-54		1.182	[1.149-1.217]	Affymetrix, Illumina [1230000] (imputed)	N
1357	chr10	101284236	101284237	rs4409764	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	10q24.2	NKX2-3	rs4409764-T	0.492	2E-20		1.22	[1.17-1.27]	Affymetrix, Illumina [953241] (imputed)	N
1357	chr10	101284344	101284345	rs4129134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	10q24.2	NR	rs4129134-C	0.407359	4E-10		0.023175	[0.016-0.03] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1357	chr10	101284344	101284345	rs4129134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	10q24.2	NR	rs4129134-C	0.405534	2E-10		0.030728	[0.021-0.04] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1357	chr10	101285115	101285116	rs12413565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q24.2		rs12413565-A	NR	1E-27		0.0201	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1357	chr10	101285115	101285116	rs12413565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q24.2		rs12413565-A	NR	4E-45		0.0302	[0.026-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1357	chr10	101285115	101285116	rs12413565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q24.2		rs12413565-A	NR	7E-42		0.0291	[0.025-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1357	chr10	101285115	101285116	rs12413565	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	10q24.2	LINC01475	rs12413565-?	NR	2E-11		0.02848	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1357	chr10	101287763	101287764	rs10883365	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	10q24.2	NKX2-3	rs10883365-G	0.48	6E-8		1.2	[1.03-1.39]	Affymetrix [469557]	N
1357	chr10	101287763	101287764	rs10883365	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	10q24.2	NKX2-3	rs10883365-?	0.48	4E-10		1.18	[1.05-1.32]	Affymetrix [see WTCCC]	N
1357	chr10	101288860	101288861	rs60386053	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q24.2	LINC01475	rs60386053-?	NR	2E-13		0.03177	[0.023-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1357	chr10	101288934	101288935	rs12412391	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q24.2	NR	rs12412391-G	0.4	4E-7		1.0752687	[1.04-1.1]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1357	chr10	101288934	101288935	rs12412391	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	10q24.2	NR	rs12412391-G	0.42	7E-7	(East Asian)	1.08	[1.05-1.11]	Affymetrix, Illumina [2400000] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	10q24.2		rs6584283-?	NR	3E-10		0.054	NR unit decrease	NR [5896510] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10q24.2		rs6584283-?	0.56	6E-11	(East Asian)	1.0869565	[1.06-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	10q24.2	NKX2-3	rs6584283-C	0.564	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	10q24.2	LINC01475	rs6584283-?	NR	1E-9		0.03497	[0.024-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	10q24.2	intergenic	rs6584283-T	0.47	8E-21		1.21	[1.16-1.26]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	10q24.2	NKX2-3	rs6584283-T	0.46	2E-6		1.22	[1.12-1.32]	Affymetrix [1897764] (imputed)	N
1357	chr10	101290300	101290301	rs6584283	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	10q24.2	NKX2, NKX3	rs6584283-?	NR	2E-7				Affymetrix [NR]	N
1357	chr10	101291592	101291593	rs11190140	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	10q24.2	NKX2-3	rs11190140-T	NR	1E-8		1.23	[NR]	Illumina [266047]	N
1357	chr10	101291592	101291593	rs11190140	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	10q24.2	NKX2-3	rs11190140-T	0.48	3E-16		1.2	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q24.2		rs11190141-T	NR	9E-69		0.0369	[0.033-0.041] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	10q24.2		rs11190141-C	0.628	7E-36				Affymetrix [10369434] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.2	NKX2-3, RP11-129J12.2	rs11190141-T	0.37155	3E-61		0.038120337	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.2	NKX2-3, RP11-129J12.2	rs11190141-T	0.371532	2E-55		0.03929267	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs11190141-T	0.401706	2E-116				Affymetrix, Illumina [23467995] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q24.2	NR	rs11190141-T	0.371953	4E-113		0.04368	[0.04-0.047] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs11190141-T	0.401666	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10q24.2	NKX2-3, RP11-129J12.2	rs11190141-T	0.371	2E-25		0.03833264	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10q24.2	NKX2-3, RP11-129J12.2	rs11190141-T	0.371	3E-36		0.04644969	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10q24.2	NKX2-3, RP11-129J12.2	rs11190141-T	0.3711	4E-19		0.03303362	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101292389	101292390	rs11190141	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q24.2	SLC25A28, GOT1, ENTPD7, CNNM1, COX15, CUTC, NKX2-3	rs11190141-C	0.739	5E-7		1.34	[1.25-1.43]	Affymetrix, Illumina [1060934] (imputed)	N
1357	chr10	101293034	101293035	rs41290504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	10q24.2		rs41290504-C	0.486	1E-19				Affymetrix [10369434] (imputed)	N
1357	chr10	101295455	101295456	rs151053941	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	10q24.2		rs151053941-?	NR	5E-10		0.0651855	[0.044-0.086] unit increase	NR [9800000] (imputed)	N
1357	chr10	101295455	101295456	rs151053941	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	10q24.2		rs151053941-?	NR	4E-18		0.0898549	[0.069-0.11] unit decrease	NR [9800000] (imputed)	N
1357	chr10	101295455	101295456	rs151053941	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	10q24.2		rs151053941-?	NR	3E-13		0.0736793	[0.054-0.094] unit decrease	NR [9800000] (imputed)	N
1357	chr10	101295455	101295456	rs151053941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.2	NKX2-3	rs151053941-G	0.00871999999999995	3E-23		0.128333	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101295862	101295863	rs888208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	10q24.2		rs888208-G	0.455058	1E-18		0.0322059	[0.025-0.039] unit increase	Illumina [13476299] (imputed)	N
1357	chr10	101298450	101298451	rs1332099	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	10q24.2		rs1332099-?	NR	5E-10		0.052	NR unit decrease	NR [5890016] (imputed)	N
1357	chr10	101298450	101298451	rs1332099	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	10q24.2	NKX2-3	rs1332099-T	0.46	9E-11				Illumina [7347414] (imputed)	N
1357	chr10	101301092	101301093	rs4590800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q24.2	NR	rs4590800-A	0.258676	1E-44		0.030897	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1357	chr10	101301092	101301093	rs4590800	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q24.2	NKX2-3	rs4590800-A	0.2583	3E-16		0.03318154	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101305341	101305342	rs1332101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.2		rs1332101-A	0.258797	2E-39		0.0331469	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101305341	101305342	rs1332101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.2		rs1332101-A	0.258824	1E-36		0.032015175	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr10	101305341	101305342	rs1332101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs1332101-A	0.295556	7E-33				Affymetrix, Illumina [24332387] (imputed)	N
1357	chr10	101305341	101305342	rs1332101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.2		rs1332101-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1357	chr10	101305341	101305342	rs1332101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q24.2	intergenic	rs1332101-A	0.2579	2E-16		0.03332858	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1357	chr10	101307770	101307771	rs80286012	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	10q24.2		rs80286012-A	0.01	4E-8				NR [NR] (imputed)	N
1357	chr10	101308889	101308890	rs10786559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.2		rs10786559-C	0.258784	4E-17		0.021259723	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr10	101308889	101308890	rs10786559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q24.2	NR	rs10786559-C	0.259579	1E-23		0.021117	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1357	chr10	101308889	101308890	rs10786559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs10786559-C	0.282295	8E-60				Affymetrix, Illumina [24246363] (imputed)	N
1357	chr10	101308889	101308890	rs10786559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q24.2	NR	rs10786559-C	0.259619	1E-47		0.030045	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1357	chr10	101308889	101308890	rs10786559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.2	NR	rs10786559-C	0.284793	5E-57				Affymetrix, Illumina [20825802] (imputed)	N
1357	chr10	101315165	101315166	rs10786560	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q24.2	SnoU13, COX15, CNNM1, WNT8B, NKX2-3	rs10786560-G	0.762	4E-6	(conditioned on lead SNPs in LD)	1.05	[1.03-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1358	chr10	101320611	101320612	rs10748785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.2		rs10748785-T	0.381282	5E-10		0.015577284	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1358	chr10	101322554	101322555	rs989978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.2		rs989978-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1358	chr10	101322554	101322555	rs989978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	10q24.2	intergenic	rs989978-G	0.2589	3E-9		0.02405459	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1358	chr10	101328969	101328970	rs7078410	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	10q24.2	NR	rs7078410-?	NR	3E-6		0.0157	[0.009-0.0224] unit decrease	Illumina [~ 7800000] (imputed)	N
1358	chr10	101329157	101329158	rs12241254	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q24.2	Intergenic	rs12241254-T	0.1609829	5E-11	(EA, Calcium/calmodulin-dependent protein kinase type 1)	0.4111	[0.29-0.53] unit increase	Affymetrix [509946]	N
1358	chr10	101335002	101335003	rs7906204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.2	NR	rs7906204-G	NR	5E-13		0.0358	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1358	chr10	101335002	101335003	rs7906204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs7906204-G	NR	4E-13		0.036	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1358	chr10	101342940	101342941	rs878939	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	10q24.2	NR	rs878939-G	0.208	9E-7	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	6.431	[NR]	Affymetrix [> 650000] (imputed)	N
1358	chr10	101345365	101345366	rs1035209	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	10q24.2	NR	rs1035209-T	0.195	1E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [12931465] (imputed)	N
1358	chr10	101345365	101345366	rs1035209	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	10q24.2	SLC25A28, ABCC2, MRP2, NKX2-3	rs1035209-T	0.195	5E-11		1.12	[1.08-1.16]	Illumina [NR] (imputed)	N
1358	chr10	101346608	101346609	rs2193352	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	10q24.2	NR	rs2193352-G	NR	2E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
1358	chr10	101351703	101351704	rs11190164	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q24.2	SnoU13, COX15, CNNM1, WNT8B, NKX2-3	rs11190164-G	0.2626	7E-15		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1358	chr10	101351703	101351704	rs11190164	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	10q24.2	ENTPD7, COX15, CUTC, ABCC2, SLC25A28	rs11190164-G	0.29	8E-7	(EA)	1.1	[1.05-1.14]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1358	chr10	101351703	101351704	rs11190164	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	10q24.2	ENTPD7, COX15, CUTC, ABCC2, SLC25A28	rs11190164-G	0.29	4E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1358	chr10	101351703	101351704	rs11190164	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	10q24.2	SLC25A28, NKX2-3	rs11190164-G	0.29	8E-7		1.13	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1358	chr10	101365312	101365313	rs11190179	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	10q24.2	SLC25A28	rs11190179-G	0.12	2E-6		0.65	unit increase	Illumina [283437]	N
1358	chr10	101391168	101391169	rs7098322	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q24.2	SLC25A28	rs7098322-T	0.87522359585545	1E-11		0.0055034	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1358	chr10	101403322	101403323	rs185979634	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q24.2	ENTPD7	rs185979634-T	0.950296	9E-32		0.0104736	[0.0087-0.0122] unit increase	Affymetrix [13995440] (imputed)	N
1358	chr10	101414832	101414833	rs74535321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs74535321-A	NR	1E-9		0.0412	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1359	chr10	101452216	101452217	rs72832517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.2	NR	rs72832517-G	NR	1E-20		0.0517	[0.041-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1359	chr10	101452216	101452217	rs72832517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q24.2	NR	rs72832517-G	NR	7E-11		0.0395	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1359	chr10	101452216	101452217	rs72832517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs72832517-G	NR	5E-15		0.0436	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1359	chr10	101452216	101452217	rs72832517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs72832517-G	NR	2E-13		0.0411	[0.03-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1359	chr10	101452216	101452217	rs72832517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs72832517-G	NR	8E-24		0.0559	[0.045-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1359	chr10	101492402	101492403	rs2281636	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.2	COX15, CUTC	rs2281636-A	0.336	6E-6	(LDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1359	chr10	101493821	101493824	rs565604340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q24.2		rs565604340-A	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1359	chr10	101520940	101520941	rs2804414	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	10q24.2	NR	rs2804414-?	NR	2E-9		0.07759	[0.052-0.103] unit decrease novel	Illumina [6108953] (imputed)	N
1359	chr10	101576326	101576327	rs72838118	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs72838118-A	NR	3E-9		0.0187	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1359	chr10	101576326	101576327	rs72838118	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs72838118-A	NR	1E-13		0.0234	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101590485	101590486	rs41318029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.2	NR	rs41318029-A	NR	1E-9		0.0561	[0.038-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101590485	101590486	rs41318029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q24.2	NR	rs41318029-A	NR	4E-12		0.0687	[0.049-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101590485	101590486	rs41318029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs41318029-A	NR	9E-11		0.0599	[0.042-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1360	chr10	101590485	101590486	rs41318029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs41318029-A	NR	2E-15		0.0736	[0.056-0.092] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101590485	101590486	rs41318029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs41318029-A	NR	2E-21		0.0876	[0.07-0.106] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101592621	101592622	rs4148398	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.2	NR	rs4148398-?	NR	1E-6		4.859	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1360	chr10	101593749	101593750	rs56050010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q24.2		rs56050010-G	NR	2E-33		0.058	[0.049-0.067] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1360	chr10	101600736	101600737	rs112344408	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.2	ABCC2	rs112344408-C	0.941208	6E-18	(glycocholenate sulfate*)	0.425	[0.33-0.52] unit increase	Illumina [13039987] (imputed)	N
1360	chr10	101603521	101603522	rs17216177	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q24.2	ABCC2	rs17216177-T	0.942578	6E-47		0.0153846	[0.013-0.018] unit increase	Affymetrix [13995440] (imputed)	N
1360	chr10	101604480	101604481	rs72838129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.2		rs72838129-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1360	chr10	101610532	101610533	rs8187707	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	10q24.2	ABCC2	rs8187707-?	NR	5E-6	(adjusted for dose, GFR & AST)	1.21	unit decrease (EA)	Illumina [610255]	N
1360	chr10	101623755	101623756	rs78808084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.2		rs78808084-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1360	chr10	101647969	101647971	rs779436795	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs779436795-GTTTGTTTTTGTT	NR	6E-9		1.0413		Affymetrix [9869154] (imputed)	N
1360	chr10	101673458	101673459	rs75483041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs75483041-C	NR	2E-11		0.03	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101673458	101673459	rs75483041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs75483041-C	NR	1E-10		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1360	chr10	101694484	101694485	rs2805495	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.2	NR	rs2805495-?	NR	2E-17				Affymetrix [NR]	N
1361	chr10	101715248	101715249	rs80174740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs80174740-C	NR	2E-10		0.0699	[0.048-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101746911	101746911	rs796177770	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	10q24.2	NR	rs796177770-C	0.604117	2E-9		0.0193006	[0.013-0.026] unit increase	Affymetrix [16577424] (imputed)	N
1361	chr10	101766361	101766362	rs57256140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.2	NR	rs57256140-C	NR	1E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101766361	101766362	rs57256140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	10q24.2	NR	rs57256140-C	NR	2E-13		0.0363	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101766361	101766362	rs57256140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs57256140-C	NR	2E-21		0.0434	[0.034-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1361	chr10	101766361	101766362	rs57256140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs57256140-C	NR	4E-13		0.033	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101766361	101766362	rs57256140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs57256140-C	NR	7E-28		0.0497	[0.041-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101786634	101786635	rs117629721	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.2		rs117629721-C	0.965	5E-8		0.17	[0.11-0.23] % increase	Affymetrix [NR] (imputed)	N
1361	chr10	101788307	101788308	rs7896471	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q24.2	Intergenic	rs7896471-T	0.03610832	3E-11	(EA, Neutrophil collagenase)	0.7499	[0.53-0.97] unit decrease	Affymetrix [509946]	N
1361	chr10	101795360	101795361	rs10883437	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	10q24.2	CPN1	rs10883437-T	0.64	4E-9		2.3	[1.40-3.10] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1361	chr10	101797514	101797515	rs181978376	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs181978376-C	0.046	3E-13	(Adseverin, SCIN.12684.5.3)	0.44	[0.32-0.56] unit increase	Affymetrix [10572788] (imputed)	N
1361	chr10	101798345	101798346	rs2862928	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q24.2		rs2862928-?	NR	8E-10		0.00562699	[0.0038-0.0074] unit increase	NR [NR]	N
1361	chr10	101799301	101799302	rs4486555	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,360 Icelandic ancestry individuals	NA	10q24.2		rs4486555-T	0.3618	1E-45		0.270402	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
1361	chr10	101799301	101799302	rs4486555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.2		rs4486555-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1361	chr10	101803424	101803425	rs4295981	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	NR	rs4295981-T	0.4	6E-20	(Neutrophil collagenase, MMP8.2954.56.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAAO	5,350 Icelandic ancestry individuals	NA	10q24.2		rs11599750-T	0.3613	5E-46		0.259588	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	10q24.2		rs11599750-T	0.38	2E-101		0.179	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	NR	rs11599750-T	0.408	3E-33	(Apolipoprotein L1, APOL1.9506.10.3)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	10q24.2	NR	rs11599750-?	NR	4E-12	(Calpastatin)	0.2	[0.16-0.24] unit decrease	Illumina [4020654] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	10q24.2	CWF19L1	rs11599750-C	0.62	3E-13		0.16	unit increase	Illumina [5270624] (imputed)	N
1361	chr10	101805441	101805442	rs11599750	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	10q24.2	CPN1	rs11599750-T	0.38	2E-13		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1361	chr10	101806251	101806252	rs4919420	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	NR	rs4919420-G	0.414	1E-22	(3-hydroxyanthranilate 3,4-dioxygenase, HAAO.5861.78.3)	0.24	[0.2-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101810303	101810304	rs7091871	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	10q24.2	NR	rs7091871-?	NR	1E-31	(CAMK1)			Illumina [~ 4000000] (imputed)	N
1361	chr10	101810303	101810304	rs7091871	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q24.2	CPN1	rs7091871-T	0.06231156	1E-48	(Calcium/calmodulin-dependent protein kinase type 1)	1.305	[1.14-1.47] unit increase	Affymetrix [509946]	N
1361	chr10	101810303	101810304	rs7091871	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	10q24.2	CPN1	rs7091871-T	0.06231156	1E-12	(Calpastatin)	0.5764	[0.42-0.73] unit decrease	Affymetrix [509946]	N
1361	chr10	101813801	101813802	rs7084921	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	10q24.2	CPN1	rs7084921-T	0.39	9E-10		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1361	chr10	101816862	101816863	rs3750716	27153935	Zhang CE	2016-05-06	J Dermatol	Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population.	Dermatomyositis	127 Han Chinese ancestry case, 1,566 Han Chinese ancestry controls	NA	10q24.2	CPN1	rs3750716-A	0.01	9E-7		4.39	[2.31-8.35]	Illumina [812602]	N
1361	chr10	101817340	101817341	rs2862926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.2	NR	rs2862926-G	NR	3E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101817340	101817341	rs2862926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.2	NR	rs2862926-G	NR	5E-37		0.0308	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1361	chr10	101817340	101817341	rs2862926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.2	NR	rs2862926-G	NR	8E-39		0.0315	[0.027-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101817340	101817341	rs2862926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.2	NR	rs2862926-G	NR	3E-61		0.0399	[0.035-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1361	chr10	101820664	101820665	rs12782078	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q24.2	NR	rs12782078-G	0.0536	2E-8		0.1135	[0.074-0.153] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1361	chr10	101828260	101828261	rs61871700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.2	CPN1	rs61871700-T	0.374293	4E-9		0.013758058	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr10	101828260	101828261	rs61871700	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	10q24.2	CPN1	rs61871700-?	NR	4E-8	(Creatine phosphokinase)			Illumina [up to 10879115] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP8	5,365 Icelandic ancestry individuals	NA	10q24.2		rs61751507-T	0.04358	2E-13		0.335441	[0.25-0.42] unit decrease	Illumina [7506463] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGFBP3	5,359 Icelandic ancestry individuals	NA	10q24.2		rs61751507-T	0.04358	5E-14		0.33437	[0.25-0.42] unit decrease	Illumina [7506463] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	7E-30	(Calpastatin, CAST.3026.5.2)	0.67	[0.55-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	5E-20	(Cell growth regulator with EF hand domain protein 1, CGREF1.6257.56.3)	0.54	[0.42-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	4E-127	(Apolipoprotein L1, APOL1.9506.10.3)	1.33	[1.21-1.45] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	3E-40	(Neutrophil collagenase, MMP8.2954.56.2)	0.78	[0.66-0.9] unit decrease	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	2E-52	(Protocadherin alpha-7, PCDHA7.8758.2.3)	0.89	[0.77-1.01] unit increase	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.2	CPN1	rs61751507-T	0.045	2E-28	(Calcium/calmodulin-dependent protein kinase type 1, CAMK1.3592.4.3)	0.65	[0.53-0.77] unit increase	Affymetrix [10572788] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	10q24.2	CPN1	rs61751507-?	NR	6E-17		0.1203	[0.092-0.148] unit decrease novel	Illumina [6108953] (imputed)	N
1361	chr10	101829513	101829514	rs61751507	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	10q24.2		rs61751507-T	0.0406	5E-11		0.091	unit decrease	Illumina [28300000] (imputed)	N
1361	chr10	101840051	101840052	rs7900372	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	10q24.2		rs7900372-?	0.4121	3E-8		0.008066	unit decrease	NR [6200000] (imputed)	N
1361	chr10	101840118	101840119	rs11596211	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.2	CPN1	rs11596211-A	NR	1E-9		6.049	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1361	chr10	101841231	101841232	rs61733668	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AAGAB	5,365 Icelandic ancestry individuals	NA	10q24.2		rs61733668-C	0.01034	2E-19		0.832325	[0.65-1.01] unit increase	Illumina [7506463] (imputed)	N
1361	chr10	101842768	101842769	rs4606421	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AAGAB	5,365 Icelandic ancestry individuals	NA	10q24.2		rs4606421-A	0.3843	3E-141		0.467528	[0.43-0.5] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101861434	101861435	rs11597390	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	10q24.31	CHUK, ERLIN1, CPN1	rs11597390-A	0.36	2E-8	(ALT)	0.04	[0.025-0.053] U/L decrease	Affymetrix, Illumina [up to 496032]	N
1362	chr10	101868346	101868347	rs7076325	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10q24.31	TPM4P1	rs7076325-?	NR	6E-6				Affymetrix, Illumina [15642250] (imputed)	N
1362	chr10	101868676	101868677	rs12776318	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q24.31	CPN1	rs12776318-T	0.626527	4E-11		0.0128259	[0.009-0.0166] unit decrease	NR [13737936] (imputed)	N
1362	chr10	101875424	101875425	rs140639135	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	10q24.31		rs140639135-C	0.959972	5E-6		0.031859	[0.018-0.046] unit decrease	Illumina [13900000] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHA7	5,367 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	2E-57		0.712636	[0.63-0.8] unit increase	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HS3ST1	5,357 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	5E-215		1.28089	[1.2-1.36] unit increase	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAAO	5,350 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	3E-30		0.478805	[0.4-0.56] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	8E-14		0.335521	[0.25-0.42] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	1E-14		0.345805	[0.26-0.43] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EBI3	5,361 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	4E-13		0.318752	[0.23-0.4] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMK1	5,339 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	4E-58		0.644481	[0.57-0.72] unit increase	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,360 Icelandic ancestry individuals	NA	10q24.31		rs72840032-T	0.04491	3E-45		0.614485	[0.53-0.7] unit decrease	Illumina [7506463] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q24.31	ERLIN1	rs72840032-C	0.955962	6E-17		0.0381259	[0.029-0.047] unit decrease	NR [13737936] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.31		rs72840032-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q24.31		rs72840032-?	NR	3E-10		0.0324844	[0.023-0.042] unit decrease	Affymetrix [20259828] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.31	RP11-316M21.9	rs72840032-T	0.047	6E-14	(Tyrosine-protein kinase JAK2, JAK2.4998.50.2)	0.45	[0.33-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
1362	chr10	101889963	101889964	rs72840032	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q24.31	RP11-316M21.9	rs72840032-T	0.047	3E-41	(3-hydroxyanthranilate 3,4-dioxygenase, HAAO.5861.78.3)	0.79	[0.67-0.91] unit decrease	Affymetrix [10572788] (imputed)	N
1362	chr10	101893417	101893418	rs7893985	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q24.31		rs7893985-?	NR	1E-9		0.00556324	[0.0038-0.0074] unit increase	NR [NR]	N
1362	chr10	101904937	101904938	rs35835615	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	10q24.31	NR	rs35835615-?	0.09	1E-6		1.2048193	[1.11-1.3]	Illumina [~ 1113287] (imputed)	N
1362	chr10	101906332	101906333	rs975752	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.31	NR	rs975752-A	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q24.31		rs2862954-C	NR	5E-8		0.0573	[0.037-0.078] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q24.31		rs2862954-C	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q24.31		rs2862954-C	NR	5E-155		0.0573	[0.053-0.062] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	10q24.31	ERLIN1	rs2862954-?	NR	9E-86		0.0054	[0.0048-0.006] unit decrease	Affymetrix [21347608] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	10q24.31	ERLIN1	rs2862954-?	NR	2E-161		0.0121	[0.011-0.013] unit decrease	Affymetrix [21347608] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q24.31	ERLIN1	rs2862954-T	0.50283	9E-215		0.0120693	[0.011-0.013] unit increase	Affymetrix [13995440] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q24.31	ERLIN1	rs2862954-T	0.5	3E-73		18.1	z-score increase	Affymetrix [4314223] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q24.31	ERLIN1	rs2862954-T	0.5	3E-114		22.7	z-score increase	Affymetrix [4312306] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q24.31	NR	rs2862954-C	0.4835	2E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	10q24.31	NR	rs2862954-C	0.4872	2E-8		0.0114293415	[0.0074-0.0154] unit decrease	Affymetrix [10613246] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q24.31	ERLIN1	rs2862954-T	0.503711	1E-14		0.0147529	[0.011-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q24.31	NR	rs2862954-C	0.500033	6E-9		0.0182502	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q24.31	NR	rs2862954-C	0.49958899999999995	3E-28		0.00975534	[0.0081-0.0114] unit increase	Affymetrix [16582909] (imputed)	N
1362	chr10	101912063	101912064	rs2862954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q24.31	NR	rs2862954-C	0.49958899999999995	3E-24		0.0100013	[0.0082-0.0118] unit increase	Affymetrix [16582965] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	10q24.31		rs1408579-C	0.50535	5E-8		0.0213583	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q24.31	NR	rs1408579-C	0.481113	5E-9		0.036716107	[0.024-0.049] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q24.31	ERLIN1	rs1408579-?		1E-16		0.0463	[0.035-0.057] unit increase	Illumina [31500000] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q24.31	NR	rs1408579-C	0.5591	6E-11		0.0275	[0.019-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q24.31	ERLIN1	rs1408579-?	NR	2E-8		0.011130868	[0.0073-0.015] unit increase	NR [7306098]	N
1362	chr10	101912193	101912194	rs1408579	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q24.31	ERLIN1	rs1408579-T	0.4351	7E-11		0.0185	[0.013-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q24.31	Intergenic	rs1408579-T	0.4959	4E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.31	NR	rs1408579-T	NR	5E-9		5.84	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1362	chr10	101912193	101912194	rs1408579	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.31	ERLIN1	rs1408579-T	NR	1E-11		6.772	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1362	chr10	101916872	101916873	rs3927496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q24.31	NR	rs3927496-A	0.5721229999999999	1E-19		0.0100264	[0.0078-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
1362	chr10	101916872	101916873	rs3927496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q24.31	NR	rs3927496-A	0.5721229999999999	1E-17		0.0101418	[0.0077-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
1362	chr10	101924302	101924303	rs117527803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.31	NR	rs117527803-A	NR	6E-11		0.0353	[0.025-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1362	chr10	101924302	101924303	rs117527803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.31	NR	rs117527803-A	NR	3E-14		0.041	[0.03-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1362	chr10	101924302	101924303	rs117527803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.31	NR	rs117527803-A	NR	6E-20		0.0492	[0.039-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q24.31		rs10883451-C	NR	2E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q24.31	NR	rs10883451-C	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	10q24.31	NR	rs10883451-C	0.447	3E-8		0.009604758	[0.0062-0.013] unit decrease	Affymetrix [NR] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q24.31	ERLIN1	rs10883451-T	0.503723	2E-29		0.0220804	[0.018-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q24.31	NR	rs10883451-C	0.49880599999999997	8E-11		0.00881011	[0.0064-0.0112] unit increase	Affymetrix [16585854] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q24.31	NR	rs10883451-C	0.49880599999999997	1E-8		0.00870303	[0.0059-0.0115] unit increase	Affymetrix [16585866] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.31	Intergenic	rs10883451-T	0.5178	4E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1362	chr10	101924417	101924418	rs10883451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q24.31	Intergenic	rs10883451-T	0.5036	1E-10	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1362	chr10	101930408	101930409	rs11595238	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	10q24.31	ERLIN1	rs11595238-?	0.04	2E-6	(Prostate cancer, rectal incontinence, multivariable analysis)	6.61		Illumina [2417493] (imputed)	N
1362	chr10	101946032	101946033	rs28372851	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	10q24.31	ERLIN1	rs28372851-A	0.042268249	5E-7		1.2485899	[1.144910242-1.361658336]	Illumina [10439017] (imputed)	N
1362	chr10	101953274	101953275	rs76731979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.31	NR	rs76731979-G	NR	8E-10		0.0313	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1362	chr10	101964535	101964536	rs17886182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	10q24.31	NR	rs17886182-A	NR	1E-10		0.0447	[0.031-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr10	101976500	101976501	rs11591741	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q24.31	CHUK	rs11591741-C	0.440386558895344	1E-9		0.0475	[0.032-0.063] unit decrease	NR [5035015] (imputed)	N
1363	chr10	101983412	101983413	rs17882802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	10q24.31		rs17882802-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1363	chr10	101983412	101983413	rs17882802	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.31		rs17882802-A	0.4295	3E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1363	chr10	101993564	101993566	rs35823982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q24.31		rs35823982-C	NR	2E-16		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1363	chr10	101993564	101993566	rs35823982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q24.31		rs35823982-C	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1363	chr10	102002107	102002108	rs34997499	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	10q24.31	NR	rs34997499-C	0.04	8E-7		1.2	[1.12-1.28]	Illumina [8468885] (imputed)	N
1363	chr10	102011210	102011211	rs12265333	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		CHUK	rs12265333-A	NR	1E-9		1.08	NR	NR [8016731] (imputed)	N
1363	chr10	102027406	102027407	rs12784396	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q24.31		rs12784396-C	NR	3E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr10	102027406	102027407	rs12784396	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q24.31	NR	rs12784396-C	NR	2E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr10	102027406	102027407	rs12784396	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q24.31	NR	rs12784396-C	NR	9E-7		0.014	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr10	102027535	102027536	rs41290534	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	10q24.31		rs41290534-?	NR	1E-8		0.00816631	[0.0054-0.011] unit decrease	NR [NR]	N
1363	chr10	102027667	102027677	rs1255694803	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10q24.31		rs1255694803-C	NR	7E-6		0.21197		Affymetrix, Illumina [62056310] (imputed)	N
1363	chr10	102038640	102038641	rs61871342	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.31	NR	rs61871342-?	NR	6E-7		4.995	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1363	chr10	102038640	102038641	rs61871342	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	10q24.31	CHUK	rs61871342-G	0.55	2E-9		1.1		Illumina, Perlegen [9113515] (imputed)	N
1363	chr10	102048642	102048643	rs117260820	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10q24.31	NR	rs117260820-?	NR	2E-6		0.01279	[0.0076-0.018] unit decrease	Affymetrix [9658292] (imputed)	N
1363	chr10	102048978	102048979	rs12765052	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	10q24.31	PKD2L1	rs12765052-T	0.041715698	1E-6		1.241036	[1.138184927-1.353181152]	Illumina [10439017] (imputed)	N
1363	chr10	102055545	102055546	rs7079679	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	10q24.31	PKD2L1	rs7079679-A	NR	2E-9	(BDRPRED, EA)	0.41	[0.23-0.59] unit increase	Illumina [NR] (imputed)	N
1363	chr10	102056507	102056508	rs2278843	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	10q24.31	PKD2L1	rs2278843-G	NR	7E-7	(BDRBASE)	0.42	[0.26-0.58] unit increase	Illumina [NR] (imputed)	N
1363	chr10	102066184	102066185	rs17112901	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q24.31	PKD2L1	rs17112901-A	0.163	2E-6	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
1363	chr10	102072017	102072018	rs677603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.31	NR	rs677603-T	NR	7E-23		0.0266	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr10	102072017	102072018	rs677603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q24.31	NR	rs677603-T	NR	2E-19		0.0244	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr10	102072017	102072018	rs677603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q24.31	NR	rs677603-T	NR	2E-35		0.0335	[0.028-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q24.31		rs603424-G	0.82614	2E-21		0.0508101	[0.04-0.061] unit decrease	NR [11722792] (imputed)	N
1363	chr10	102075478	102075479	rs603424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	10q24.31		rs603424-G	0.82614	2E-10		0.0329406	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1363	chr10	102075478	102075479	rs603424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q24.31		rs603424-G	0.82614	5E-21		0.0489882	[0.039-0.059] unit increase	NR [11722792] (imputed)	N
1363	chr10	102075478	102075479	rs603424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	10q24.31		rs603424-G	0.826163	2E-8		0.0305648	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1363	chr10	102075478	102075479	rs603424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	10q24.31		rs603424-G	0.826163	3E-13		0.038578	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q24.31		rs603424-A	NR	2E-10		0.0197	[0.014-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q24.31		rs603424-A	NR	4E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:1_[M+H]1+/Lysophosphatidylethanolamine_19:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	10q24.31		rs603424-A	NR	1E-42		0.195029	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(16:1)_[M+H]1+/Lysophosphatidylethanolamine(19:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	10q24.31		rs603424-A	NR	4E-11		0.0767	[0.054-0.099] unit decrease	Illumina [6720657] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(16:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	10q24.31		rs603424-C	NR	5E-11		0.0921	[0.065-0.12] unit decrease	Illumina [6720657] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q24.31		rs603424-A	NR	2E-16		0.110613	[0.084-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1363	chr10	102075478	102075479	rs603424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q24.31	PKD2L1	rs603424-A	NR	4E-8		0.0209004	[0.013-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q24.31	PKD2L1	rs603424-G	0.828063	4E-35		0.00366613	[0.0031-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q24.31	PKD2L1	rs603424-G	0.83	4E-16		8.15	z-score increase	Affymetrix [4311822] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	NR	1E-12		0.0223	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	NR	1E-23		0.0314	[0.025-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	NR	7E-14		0.0235	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	NR	1E-10		0.0207	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	NR	8E-16		0.0252	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.31	PKD2L1	rs603424-G	0.73217	3E-17	(palmitoleate (16:1n7))	0.227	[0.17-0.28] unit increase	Illumina [13039987] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.31	PKD2L1	rs603424-G	0.73217	2E-15	(myristoleate (14:1n5))	0.215	[0.16-0.27] unit increase	Illumina [13039987] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.31	PKD2L1	rs603424-G	0.73217	2E-14	(1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)*)	0.209	[0.16-0.26] unit increase	Illumina [13039987] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q24.31	PKD2L1	rs603424-G	0.73217	2E-13	(5-dodecenoate (12:1n7))	0.198	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1363	chr10	102075478	102075479	rs603424	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q24.31	PKD2L1	rs603424-?	NR	6E-9		0.0400637	[0.027-0.054] unit increase	Illumina [4804024] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q24.31	PKD2L1	rs603424-A	0.171407	3E-16		0.024034925	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q24.31	PKD2L1	rs603424-A	0.172128	1E-71		0.053817675	[0.048-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q24.31	PKD2L1	rs603424-A	0.171383	4E-14		0.022122512	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.31	NR	rs603424-G	0.808926	9E-16				Affymetrix, Illumina [22063850] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q24.31	NR	rs603424-G	0.82495	5E-18		0.021516	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	0.16872	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.31	NR	rs603424-G	0.80981	3E-108				Affymetrix, Illumina [17210439] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q24.31	NR	rs603424-G	0.826997	5E-110		0.056836	[0.052-0.062] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.31	NR	rs603424-A	0.168689	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q24.31	NR	rs603424-A	0.174511	3E-16		0.020453	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1363	chr10	102075478	102075479	rs603424	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q24.31	PKD2L1	rs603424-?	NR	3E-11		0.0228	[0.017-0.029] unit increase	Affymetrix [5701386] (imputed)	N
1363	chr10	102075478	102075479	rs603424	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	10q24.31	PKD2L1	rs603424-?	NR	7E-11	(MUFA_FA)	0.040770594	NR unit decrease	Illumina [609262]	N
1363	chr10	102075478	102075479	rs603424	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q24.31	PKD2L1	rs603424-G	0.83133	4E-41		0.0333491	[0.028-0.038] unit increase	NR [13737936] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.31		rs603424-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q24.31		rs603424-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.31		rs603424-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q24.31		rs603424-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (adipose tissue)	783 European ancestry individuals	NA	10q24.31	PKD2L1	rs603424-A	0.14	2E-19	(SCD)			Illumina [1621833] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q24.31	PKD2L1	rs603424-A	0.1815	2E-17		0.1717	[0.13-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q24.31		rs603424-?	NR	7E-31		0.0309939	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1363	chr10	102075478	102075479	rs603424	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	10q24.31	PKD2L1	rs603424-A	NR	3E-13	(Lysophosphatidylcholine with acyl residue C16:0/Lysophosphatidylcholine with acyl residue C16:1)	0.35231	[0.26-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1363	chr10	102075478	102075479	rs603424	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q24.31	PKD2L1	rs603424-A	0.215	3E-6		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
1363	chr10	102075478	102075479	rs603424	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q24.31	PKD2L1	rs603424-G	0.827238	3E-9	(women)	0.0362839	[0.024-0.048] unit increase	NR [17166351] (imputed)	N
1363	chr10	102075478	102075479	rs603424	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q24.31	PKD2L1	rs603424-G	0.826911	3E-12		0.0309871	[0.022-0.04] unit increase	NR [17166351] (imputed)	N
1363	chr10	102075478	102075479	rs603424	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Vaccenic acid (18:1n-7) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	10q24.31	SCD, PKD2L1	rs603424-A	NR	2E-16		0.032	[0.024-0.04] unit decrease	Affymetrix, Illumina [2200000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Vaccenic acid (18:1n-7) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	10q24.31	PKD2L1, SCD	rs603424-A	0.204	6E-17	(EA)	0.035	[0.027-0.043] unit decrease	Affymetrix, Illumina [2200000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Palmitoleic acid (16:1n-7) levels	3,521 Chinese ancestry individuals, European individuals (see Wu 2013).	NA	10q24.31	PKD2L1	rs603424-A	NR	4E-15		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q24.31	PKD2L1	rs603424-A	0.1731	5E-31		0.05547052	[0.046-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	10q24.31	PKD2L1, SCD	rs603424-A	0.1724	9E-19	(lysoPhosphatidylcholine acyl C16:1)	0.066	[0.051-0.081] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	10q24.31	SCD	rs603424-A	0.18	1E-115	(myristate (14:0)/myristoleate (14:1n5))	0.054	[0.05-0.058] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.31	SCD	rs603424-A	0.19	7E-16	(myristoleate (14:1n5))	0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.31	SCD	rs603424-A	0.19	2E-14	(margarate (17:0))	0.029	[0.021-0.037] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.31	SCD	rs603424-A	0.18	6E-21	(stearate (18:0))	0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q24.31	SCD	rs603424-A	0.18	1E-14	(palmitoleate (16:1n7))	0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	10q24.31	PKD2L1	rs603424-G	0.32	1E-11	(Palmitoleate (16:1n7))	0.11	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1363	chr10	102075478	102075479	rs603424	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		10q24.31	PKD2L1	rs603424-A	0.193	6E-15		0.033	[0.024-0.041] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		10q24.31	PKD2L1, SCD	rs603424-A	NR	2E-7		0.1891	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1363	chr10	102075478	102075479	rs603424	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	10q24.31	PKD2L1	rs603424-?	NR	6E-14	(levels)	1.4	[NR] % increase	Illumina [NR] (imputed)	N
1363	chr10	102075478	102075479	rs603424	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	10q24.31	SCD	rs603424-A	0.189	3E-57	(SM-6 + 94 other traits)	0.124	[NR] unit increase	Affymetrix, Illumina [534665]	N
1363	chr10	102087037	102087038	rs525190	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.31	SCD	rs525190-?	NR	4E-7	(LPC 16:1)	0.25151035	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1363	chr10	102089662	102089663	rs569511	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:1_[M+H]1+/Lysophosphatidylethanolamine_19:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	10q24.31		rs569511-T	NR	9E-12		0.113297	[0.081-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1363	chr10	102089662	102089663	rs569511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.31	NR	rs569511-T	NR	2E-9		0.0215	[0.014-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1363	chr10	102089662	102089663	rs569511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.31	NR	rs569511-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1363	chr10	102096353	102096354	rs2148204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.31	NR	rs2148204-A	0.363498	1E-12				Affymetrix, Illumina [19905671] (imputed)	N
1363	chr10	102096353	102096354	rs2148204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q24.31	NR	rs2148204-A	0.363883	3E-14		0.016926	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1363	chr10	102100471	102100472	rs55805447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q24.31	RP11-34D15.2	rs55805447-T	0.257609	4E-10		0.01629157	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr10	102101279	102101280	rs7069475	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs7069475-T	NR	2E-8	(conditional)	0.041	[0.027-0.055] unit decrease	Affymetrix [9869154] (imputed)	N
1363	chr10	102103507	102103508	rs56014906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q24.31	RP11-34D15.2	rs56014906-G	0.368029	4E-16		0.018743727	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr10	102103507	102103508	rs56014906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10q24.31	RP11-34D15.2	rs56014906-G	0.368047	4E-15		0.01808368	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1363	chr10	102104520	102104521	rs735877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:1_[M+H]1+/Lysophosphatidylethanolamine_19:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	10q24.31		rs735877-T	NR	2E-13		0.0834403	[0.061-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1363	chr10	102104520	102104521	rs735877	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	10q24.31	PKD2L1, SCD	rs735877-?	NR	2E-10		0.418	[0.28-0.56] unit decrease	Affymetrix [11100000] (imputed)	N
1363	chr10	102104520	102104521	rs735877	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q24.31	intergenic	rs735877-A	0.412190017235728	5E-7		0.2354032	[0.14-0.33] unit increase	Illumina [247039]	N
1364	chr10	102105629	102105630	rs74942995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.31	NR	rs74942995-C	NR	1E-13		0.0268	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1364	chr10	102105787	102105788	rs11599710	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q24.31		rs11599710-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1364	chr10	102118999	102119000	rs55710213	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	10q24.31	SCD	rs55710213-T	0.361	2E-9		0.0222364	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1364	chr10	102174716	102174717	rs56231806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.31	NR	rs56231806-C	NR	5E-11		0.0333	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1365	chr10	102245663	102245664	rs149658356	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q24.31		rs149658356-C	0.02	2E-23		9.99	z score increase	Affymetrix [9061022] (imputed)	N
1365	chr10	102256196	102256197	rs9420790	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	10q24.31	ERLIN1	rs9420790-A	0.08	2E-6	(AA-triglyceride response)	34.63	[20.46-48.8] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1365	chr10	102279293	102279294	rs3750631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.31		rs3750631-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1365	chr10	102290389	102290390	rs17113174	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<lower limit of normal) in never smokers	49 European ancestry cases, 383 European ancestry controls	NA	10q24.31		rs17113174-C	NR	7E-6		5.79	[5.03-6.55]	Illumina [242926]	N
1365	chr10	102299406	102299407	rs10883511	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Palmitoleic acid (16:1n-7) levels	3,521 Chinese ancestry individuals, European individuals (see Wu 2013).	NA	10q24.31	HIF1AN	rs10883511-G	NR	8E-11		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1365	chr10	102302456	102302457	rs11190604	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		10q24.31	HIF1AN, SCD, SEC31B, NDUFB8, WNT8B	rs11190604-A	0.782	6E-9		0.0236	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q24.31		rs118158982-A	0.02	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q24.31		rs118158982-A	0.02	3E-19		8.96	z score increase	Affymetrix [9061022] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q24.31	NR	rs118158982-A	0.02	4E-13				NR [9056863] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q24.31	NR	rs118158982-A	0.02	1E-17				NR [9056863] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q24.31	WNT8B, SEC31B, NDUFB8, HIF1AN	rs118158982-?		1E-9				NR [7428630] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q24.31	NR	rs118158982-?	NR	3E-8	(right precentral)			NR [9227495] (imputed)	N
1365	chr10	102324682	102324683	rs118158982	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q24.31	NR	rs118158982-?	NR	2E-8	(left precentral)			NR [9227495] (imputed)	N
1365	chr10	102335506	102335507	rs2495739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.31		rs2495739-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1365	chr10	102338131	102338132	rs7074041	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q24.31	NR	rs7074041-?	NR	3E-20				Affymetrix [NR]	N
1365	chr10	102342568	102342568	rs201042847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q24.31		rs201042847-T	0.810349	2E-9		0.0320021	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1365	chr10	102359759	102359760	rs4447106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q24.31		rs4447106-G	0.883738	2E-11		0.0430437	[0.03-0.056] unit increase	NR [11722792] (imputed)	N
1365	chr10	102362542	102362543	rs2495726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.31	NR	rs2495726-C	NR	3E-10		0.0206	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1366	chr10	102370840	102370841	rs1936361	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	10q24.31	HIF1AN, PAX2	rs1936361-T	0.444	5E-9				Illumina [5088365] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10q24.31	NA	rs17094222-T	0.7912	4E-18		0.0173	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q24.31	NR	rs17094222-T	NR	6E-15		0.025	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q24.31	HIF1AN, PAX2	rs17094222-C	0.2	2E-15		0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.31	PAX2	rs17094222-T	0.7965	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.31	PAX2	rs17094222-T	0.7965	2E-6		0.0197	[0.012-0.028] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q24.31	NR	rs17094222-T	0.791660103324089	1E-9		0.020542767	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1366	chr10	102395439	102395440	rs17094222	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.31	HIF1AN	rs17094222-C	0.211	8E-10	(EA, men)	0.031	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1366	chr10	102395439	102395440	rs17094222	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.31	HIF1AN	rs17094222-C	0.211	6E-11	(EA)	0.025	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1366	chr10	102395439	102395440	rs17094222	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.31	HIF1AN	rs17094222-C	0.209	2E-11		0.025	[0.018-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1366	chr10	102416730	102416730	rs398038222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q24.31		rs398038222-TG	0.513919	5E-10		0.0172942	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
1366	chr10	102420170	102420171	rs72838588	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.31	NR	rs72838588-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1366	chr10	102425948	102425949	rs2495707	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q24.31	HIF1AN, PAX2	rs2495707-G	0.447	1E-9	(Japanese)	0.025	[0.017-0.033] unit decrease	Illumina [6108953] (imputed)	N
1366	chr10	102444893	102444894	rs1419178	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.31	HIF1AN	rs1419178-?	NR	9E-6	(TAG 48:0)	0.22605158	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q24.31		rs41310284-A	NR	2E-14		0.0295	[0.022-0.037] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q24.31	PAX2	rs41310284-C	0.898985	1E-18		0.0206042	[0.016-0.025] unit increase	Affymetrix [12370749]	N
1366	chr10	102447646	102447647	rs41310284	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q24.31	PAX2	rs41310284-C	0.898985	1E-14		0.0177406	[0.013-0.022] unit increase	Affymetrix [12370749]	N
1366	chr10	102447646	102447647	rs41310284	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.31	NR	rs41310284-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	10q24.31	intergenic	rs41310284-A	0.0969716	4E-7		0.01065	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q24.31		rs41310284-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.31		rs41310284-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1366	chr10	102447646	102447647	rs41310284	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q24.31	NA	rs41310284-A	0.097	4E-19		0.029	[0.023-0.035] unit decrease	NR [~ 27400000] (imputed)	N
1366	chr10	102470431	102470432	rs7916385	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.31	NR	rs7916385-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
1366	chr10	102486145	102486146	rs112480585	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q24.31	LBX1	rs112480585-T	0.0720876	3E-6		0.598	[0.481 - 0.742]	Illumina [5397362] (imputed)	N
1367	chr10	102501570	102501571	rs4509693	20061627	Heinzen EL	2009-09-11	J Alzheimers Dis	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	10q24.31	PAX2	rs4509693-?	0.18	6E-6				Illumina [~ 550000]	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	6E-10	(CAPN2)	0.05086	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	5E-9	(CAPNS1)	0.02477	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	5E-9	(CAP1)	0.3281	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	3E-8	(DPYSL2)	0.2429	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	3E-12	(FKBP1A)	0.03171	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	3E-10	(NUTF2)	0.02654	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-9	(LDHB)	0.1424	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-8	(TPM4)	0.1165	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-8	(RBP1)	0.05533	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-8	(GSN)	0.0424	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-8	(CLIC1)	0.1586	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	2E-11	(TAGLN)	0.4055	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102502034	102502035	rs117440655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs117440655-T	0.0122	1E-18	(GSTP1)	0.3097	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102507465	102507466	rs7912268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.31	NR	rs7912268-C	0.01568	1E-8	(RNASE2)	0.03458	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr10	102531606	102531607	rs561980690	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	10q24.31	intergenic	rs561980690-A	3.0E-4	7E-29		19.3105	[15.92-22.71] mmHg increase	Affymetrix [NR] (imputed)	N
1367	chr10	102552662	102552663	rs11190709	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	10q24.31		rs11190709-G	0.11	4E-10		0.046	[0.032-0.06] unit decrease	Affymetrix [8918919] (imputed)	N
1367	chr10	102552662	102552663	rs11190709	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	10q24.31	PAX2	rs11190709-G	0.112	1E-11		0.649	[0.46-0.84] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q24.31		rs10883543-T	NR	2E-16		0.0297	[0.023-0.037] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q24.31		rs10883543-T	NR	3E-12		0.0239	[0.017-0.031] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.31		rs10883543-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	10q24.31	NR	rs10883543-G	0.112	3E-9	(males)	0.688	[0.46-0.92] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	10q24.31	NR	rs10883543-G	0.112	2E-7	(females)	0.649	[0.4-0.89] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1367	chr10	102552751	102552752	rs10883543	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	10q24.31	NR	rs10883543-G	0.111801	1E-8	(males)	0.754234	[0.49-1.01] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1367	chr10	102553646	102553647	rs1006545	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	34,419 European ancestry men	NA	10q24.31		rs1006545-G	0.11	6E-12		0.012	[0.0081-0.0159] unit increase	Affymetrix [8918919] (imputed)	N
1367	chr10	102553646	102553647	rs1006545	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	34,419 European ancestry men	NA	10q24.31		rs1006545-G	0.11	4E-8		0.062	[0.04-0.084] unit decrease	Affymetrix [8918919] (imputed)	N
1367	chr10	102554670	102554671	rs10748798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q24.31		rs10748798-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1367	chr10	102556174	102556175	rs7072737	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs7072737-A	0.109129	1E-17		0.07937	[0.061-0.098] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102556174	102556175	rs7072737	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs7072737-A	0.109196	3E-15		0.0733709	[0.055-0.092] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102556174	102556175	rs7072737	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs7072737-A	0.109172	1E-14		0.070898	[0.053-0.089] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102556452	102556453	rs4551692	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q24.31	PAX2	rs4551692-G		2E-11		0.419	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1367	chr10	102556452	102556453	rs4551692	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q24.31	PAX2	rs4551692-G		1E-11		0.255	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1367	chr10	102558493	102558494	rs10748799	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs10748799-T	0.198553	6E-17		0.0615508	[0.047-0.076] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102558493	102558494	rs10748799	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs10748799-T	0.198649	2E-15		0.0584405	[0.044-0.073] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102558493	102558494	rs10748799	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	10q24.31	PAX2	rs10748799-T	0.198606	2E-9		0.0442366	[0.03-0.059] unit increase	Affymetrix [509255] (imputed)	N
1367	chr10	102559420	102559421	rs4917911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q24.31		rs4917911-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1367	chr10	102559420	102559421	rs4917911	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	10q24.31	PAX2	rs4917911-G	0.111	7E-15		0.665	[0.5-0.83] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1367	chr10	102604513	102604514	rs112184198	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.31	PAX2	rs112184198-A	0.1016	2E-12		0.3872	[0.28-0.5] mmHg decrease	Affymetrix [NR] (imputed)	N
1367	chr10	102604513	102604514	rs112184198	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	10q24.31	PAX2	rs112184198-A	0.1	4E-18		0.659	[0.5-0.82] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1367	chr10	102617719	102617721	rs145397547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q24.31		rs145397547-A	NR	1E-13		0.0278	[0.021-0.035] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1367	chr10	102617719	102617721	rs145397547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q24.31		rs145397547-A	NR	1E-10		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1367	chr10	102625336	102625337	rs7907902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.31	C10orf6	rs7907902-?	NR	2E-6	(cotinine)	4.2979064	[2.52-6.07] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.31	NR	rs61873510-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	10q24.31	FAM178A	rs61873510-T	0.33	5E-13		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	10q24.31	PAX2	rs61873510-G	0.6687	1E-7		0.0059	[0.0037-0.0081] unit increase	Affymetrix [~ 7740000] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	10q24.31	PAX2	rs61873510-T	0.326	7E-9		0.0157	[0.01-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	10q24.31	FAM178A	rs61873510-T	0.3272	2E-10		0.015114287	[0.01-0.02] unit decrease	Affymetrix [11514936] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	10q24.31	PAX2, FAM178A, SEMA4G, MIR608, MRPL43, C10orf2, LZTS2, PDZD7, SFXN3, KAZALD1, TLX1NB, TLX1	rs61873510-G	0.67248	1E-8		0.0057067	[0.0037-0.0077] unit increase	NR [NR] (imputed)	N
1367	chr10	102626509	102626510	rs61873510	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	10q24.31	FAM178A	rs61873510-T	0.3287	8E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1368	chr10	102634852	102634853	rs34277166	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q24.31	NA	rs34277166-A	0.44	8E-14		0.0144	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1368	chr10	102634852	102634853	rs34277166	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10q24.31	NA	rs34277166-A	0.44	8E-14		0.0144	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1368	chr10	102640662	102640663	rs10786610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q24.31		rs10786610-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1368	chr10	102648764	102648765	rs1408343	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	10q24.31	NR	rs1408343-G	0.2336	2E-19		0.0261039	[0.02-0.032] unit decrease	Affymetrix [3505788] (imputed)	N
1368	chr10	102648859	102648860	rs1408345	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q24.31	NR	rs1408345-A		1E-8		0.12	[0.081-0.159] unit increase	NR [NR]	N
1368	chr10	102658498	102658499	rs118036360	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10q24.31	Y_RNA	rs118036360-A	0.0211	9E-6		0.1143	[0.064-0.165] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1368	chr10	102660280	102660281	rs2902406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q24.31		rs2902406-C	NR	1E-19		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1368	chr10	102661250	102661251	rs2181834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.31		rs2181834-?	NR	5E-39				NR [~ 8900000] (imputed)	N
1368	chr10	102664607	102664608	rs57214420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q24.31		rs57214420-A	NR	1E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1368	chr10	102670195	102670196	rs56317403	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q24.31	SLF2	rs56317403-T	0.796826	1E-10		0.00181913	[0.0013-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
1368	chr10	102672247	102672248	rs62621207	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	10q24.31	SLF2	rs62621207-T	0.047528314	6E-7		1.1592233	[1.09394131-1.228401063]	Illumina [10439017] (imputed)	N
1368	chr10	102673706	102673707	rs10883560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.31		rs10883560-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1368	chr10	102673841	102673842	rs73336283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q24.31		rs73336283-T	NR	9E-9		0.0203	[0.013-0.027] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1368	chr10	102674347	102674348	rs11597119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q24.31	NR	rs11597119-?	NR	4E-6	(male)	0.16226	[0.093-0.231] unit increase	Affymetrix [7794483] (imputed)	N
1368	chr10	102674347	102674348	rs11597119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q24.31	NR	rs11597119-?	NR	2E-9	(female)	0.14519	[0.098-0.193] unit increase	Affymetrix [7794483] (imputed)	N
1368	chr10	102674347	102674348	rs11597119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q24.31	NR	rs11597119-?	NR	1E-12		0.15808	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1368	chr10	102674636	102674637	rs11190751	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	10q24.31		rs11190751-C	NR	2E-9		0.019604383	[0.013-0.026] years increase	NR [7400000] (imputed)	N
1368	chr10	102720753	102720754	rs11190767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q24.31		rs11190767-A	NR	1E-8		0.0247	[0.016-0.033] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1368	chr10	102740059	102740060	rs147741050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	10q24.31		rs147741050-?	NR	3E-15		0.212451	[0.16-0.26] unit decrease	NR [9800000] (imputed)	N
1368	chr10	102740059	102740060	rs147741050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.31	NR	rs147741050-T	NR	1E-11		0.2227	[0.16-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
1368	chr10	102746828	102746829	rs181211282	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	10q24.31	NR	rs181211282-A	0.03	1E-8		0.67	[0.43-0.91] unit increase	Affymetrix [9231066] (imputed)	N
1368	chr10	102746828	102746829	rs181211282	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	10q24.31	NR	rs181211282-A	0.03	1E-8		0.67	[0.43-0.91] unit increase	Affymetrix [9231066] (imputed)	N
1368	chr10	102752344	102752345	rs57066921	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	10q24.31	NR	rs57066921-G	0.0453275	9E-41		0.1081	[0.092-0.124] unit decrease	Affymetrix [23037915] (imputed)	N
1368	chr10	102754237	102754238	rs3740489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q24.31	NR	rs3740489-G	NR	4E-12		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1369	chr10	102764046	102764047	rs807029	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q24.31	LZTS2	rs807029-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
1369	chr10	102764090	102764091	rs111644425	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	10q24.31	NR	rs111644425-?	NR	5E-6		1.6062	[1.4-1.81]	Illumina [NR] (imputed)	N
1369	chr10	102764337	102764338	rs58678340	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	10q24.31	TWNK, MRPL43	rs58678340-T	0.014	3E-12		0.026	[0.018-0.033] unit decrease	NR [57525634] (imputed)	N
1369	chr10	102769709	102769710	rs12784542	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.31	NR	rs12784542-G	0.529	4E-8		0.00595074	[0.0038-0.0081] unit increase	NR [9732723] (imputed)	N
1369	chr10	102824348	102824349	rs807037	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q24.31	KAZALD1	rs807037-?	NR	6E-6		0.0972976	[0.055-0.139] unit decrease	NR [13958389] (imputed)	N
1369	chr10	102824348	102824349	rs807037	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	10q24.31		rs807037-G	0.334241	2E-8		0.0486884	[0.03-0.068] increase	Affymetrix [11014269] (imputed)	N
1369	chr10	102824348	102824349	rs807037	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q24.31	NR	rs807037-G		3E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
1369	chr10	102824348	102824349	rs807037	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q24.31	ERLIN1, BLOC1S2, PKD2L1, PAX2, FAM178A, MRPL43, SFXN3, KAZALD1, TLX1NB, TLX1, LBX1, ELOVL3, PITX3, GBF1, NFKB2, PSD, CUEDC2, TMEM180, ACTR1A, SUFU, TRIM8, ARL3, SH3PXD2A	rs807037-?		3E-22				Affymetrix, Illumina [NR] (imputed)	N
1369	chr10	102824348	102824349	rs807037	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	10q24.31		rs807037-C	NR	6E-11		0.0148	[0.01-0.019] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1369	chr10	102824348	102824349	rs807037	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	10q24.31		rs807037-C	0.66	7E-54		0.017	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1369	chr10	102824348	102824349	rs807037	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	10q24.31		rs807037-C	0.67	4E-8		0.014	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1369	chr10	102824348	102824349	rs807037	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	10q24.31		rs807037-C	0.49	2E-7		0.017	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
1369	chr10	102824348	102824349	rs807037	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q24.31	KAZALD1	rs807037-C	0.6532	5E-8		5.466	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1369	chr10	102824348	102824349	rs807037	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q24.31	KAZALD1	rs807037-G	0.3346	8E-9		0.0805	[0.051-0.11] unit increase	Affymetrix [~ 11900000] (imputed)	N
1369	chr10	102845240	102845241	rs17113682	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	10q24.31		rs17113682-A	NR	4E-6		0.2	[0.08-0.46]	Illumina [10838245] (imputed)	N
1369	chr10	102853217	102853218	rs78643721	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	10q24.31	NR	rs78643721-T	0.03003	2E-6		0.4196	[0.25-0.59] unit increase	Illumina [10677593] (imputed)	N
1369	chr10	102877639	102877640	rs61871535	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q24.31	TLX1NB	rs61871535-G	NR	2E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1369	chr10	102877639	102877640	rs61871535	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q24.31	TLX1NB	rs61871535-G	NR	2E-6				Illumina [up to 11995908] (imputed)	N
1370	chr10	102893839	102893840	rs12415670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.31	TLX1	rs12415670-A	0.160617	1E-10		0.01974481	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr10	102901023	102901024	rs11190846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q24.31	RP11-31L23.3	rs11190846-T	0.430971	1E-12		0.016292116	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr10	102979206	102979207	rs11190870	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	10q24.32	LINC01514, LBX1	rs11190870-T	0.56	2E-82		1.52	[1.46-1.59]	Illumina [9332516] (imputed)	N
1370	chr10	102979206	102979207	rs11190870	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	10q24.32	LINC01514/LBX1	rs11190870-T	0.564078	1E-62		1.49	[1.42-1.56]	Illumina [9332516] (imputed)	N
1370	chr10	102979206	102979207	rs11190870	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	10q24.32	LBX1	rs11190870-?		2E-55		1.5873016	[1.52-1.69]	Affymetrix, Illumina [3493832] (imputed)	N
1370	chr10	102979206	102979207	rs11190870	26211971	Ogura Y	2015-07-23	Am J Hum Genet	A Functional SNP in BNC2 Is Associated with Adolescent Idiopathic Scoliosis.	Adolescent idiopathic scoliosis	2,109 Japanese ancestry cases, 11,140 Japanese ancestry controls	2,223 East Asian ancestry cases, 4,724 East Asian ancestry controls	10q24.32	LBX1	rs11190870-T	0.557	5E-39		1.61	[1.50-1.73]	Illumina [4420789] (imputed)	N
1370	chr10	102979206	102979207	rs11190870	22019779	Takahashi Y	2011-10-23	Nat Genet	A genome-wide association study identifies common variants near LBX1 associated with adolescent idiopathic scoliosis.	Scoliosis	1,033 Japanese ancestry adolescent female cases, 1,473 Japanese ancestry female controls	326 Japanese ancestry adolescent female cases, 9,823 Japanese ancestry female controls	10q24.32	LBX1	rs11190870-?	0.57	1E-19		1.56	[1.41-1.71]	Illumina [455121]	N
1370	chr10	102997580	102997581	rs678741	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	10q24.32	NR	rs678741-T	0.446	1E-14		1.45	[1.23-1.60]	Affymetrix [435183]	N
1370	chr10	102997580	102997581	rs678741	26394188	Zhu Z	2015-09-22	Nat Commun	Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls.	Adolescent idiopathic scoliosis	960 Han Chinese ancestry cases, 1,499 Han Chinese ancestry controls	3,316 Han Chinese ancestry cases,  4,516 Han Chinese ancestry controls	10q24.32	LBX1AS1	rs678741-A	0.451	1E-36		1.44	[1.37-1.52]	Affymetrix [516220]	N
1371	chr10	103048994	103048995	rs12242050	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	10q24.32	BTRC	rs12242050-T	0.76	8E-7		0.14	[0.081-0.199] unit decrease	Illumina [14638245] (imputed)	N
1371	chr10	103063079	103063080	rs11597176	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.32	LBX1	rs11597176-?	NR	8E-6	(SM 16:0)	0.16520892	[0.093-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1371	chr10	103065788	103065789	rs620191	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q24.32	NR	rs620191-G	0.6635	2E-8		0.0234	[0.015-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1371	chr10	103066474	103066475	rs144361223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q24.32		rs144361223-A	0.00271091	2E-13		2.0641139	[1.52-2.61] unit increase	Illumina [13427194] (imputed)	N
1371	chr10	103096092	103096093	rs72847866	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	10q24.32		rs72847866-C	NR	3E-6		4.6568146	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1371	chr10	103112164	103112165	rs11190955	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs11190955-T	0.354	2E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1371	chr10	103113034	103113035	rs10883617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.32		rs10883617-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1371	chr10	103115344	103115345	rs72847884	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10q24.32	BTRC	rs72847884-A	0.9534	3E-10		0.2664	[0.18-0.35] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1371	chr10	103117652	103117653	rs10883618	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10q24.32	BTRC	rs10883618-G	NR	4E-10		0.00815927	[0.0056-0.0107] unit decrease	Affymetrix [10061374] (imputed)	N
1371	chr10	103128331	103128332	rs11190970	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 45)	3,566 European ancestry individuals	4,680 European ancestry individuals	10q24.32		rs11190970-A	0.195163105	7E-9				Illumina [7417619] (imputed)	N
1371	chr10	103128331	103128332	rs11190970	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	10q24.32	NR	rs11190970-G	NR	7E-8		0.864	unit increase	Affymetrix [14661600] (imputed)	N
1371	chr10	103142102	103142103	rs79002608	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	NR	rs79002608-?	NR	8E-6		4.479	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1372	chr10	103164754	103164756	rs34206285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q24.32	BTRC	rs34206285-T	0.514311	1E-15		0.017928196	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr10	103165586	103165587	rs142108859	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	10q24.32	BTRC	rs142108859-?	NR	3E-8		0.06481	[0.042-0.088] unit increase novel	Illumina [6108953] (imputed)	N
1372	chr10	103186837	103186838	rs7901883	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	10q24.32	BTRC	rs7901883-A		2E-10		0.974	[NR]	Affymetrix [up to 79000000] (imputed)	N
1372	chr10	103186837	103186838	rs7901883	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q24.32	BTRC	rs7901883-A	0.2305	4E-8		0.013077027	[0.0084-0.0178] unit decrease	Affymetrix [11514654] (imputed)	N
1372	chr10	103186837	103186838	rs7901883	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs7901883-A	0.230322	2E-10	(Conditioned on chr10:104403310, chr10:104852121, chr10:103960351, chr10:104640052)	0.019257454	[0.013-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1372	chr10	103186837	103186838	rs7901883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q24.32		rs7901883-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1372	chr10	103187181	103187182	rs4917940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs4917940-C	0.658749	3E-14				Affymetrix, Illumina [22063850] (imputed)	N
1372	chr10	103197954	103197955	rs4615960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q24.32		rs4615960-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1372	chr10	103215889	103215890	rs7913802	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.32	NR	rs7913802-C	0.47	1E-8		0.00612291	[0.004-0.0082] unit increase	NR [9732723] (imputed)	N
1372	chr10	103231640	103231641	rs11191021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q24.32		rs11191021-G	0.445592	2E-9		0.0192963	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
1372	chr10	103263255	103263256	rs61874020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.32		rs61874020-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1373	chr10	103319197	103319198	rs11191048	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q24.32	NR	rs11191048-?	NR	4E-6		0.42	[0.37-0.48]	Illumina [539000] (imputed)	N
1373	chr10	103366836	103366837	rs3915773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.32	DPCD	rs3915773-C	0.286197	2E-11		0.0211925	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1373	chr10	103376995	103376996	rs17696300	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	NR	rs17696300-?	NR	2E-6		4.765	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1373	chr10	103415062	103415063	rs17696674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.32	NR	rs17696674-A	NR	4E-13		0.0307	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1374	chr10	103425567	103425568	rs10883674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.32		rs10883674-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1374	chr10	103433747	103433748	rs4326724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.32		rs4326724-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1374	chr10	103451801	103451802	rs149053406	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q24.32	FBXW4	rs149053406-C	0.96988	5E-10		0.0332865	[0.023-0.044] unit decrease	NR [13737936] (imputed)	N
1374	chr10	103476297	103476298	rs78079366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs78079366-T	0.7982	2E-9	(MTAG)	0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1374	chr10	103479061	103479062	rs114540395	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.32	NR	rs114540395-T	NR	1E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
1374	chr10	103501764	103501765	rs7077446	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	FGF8	rs7077446-G	0.4728	2E-14		0.015484313	[0.012-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1374	chr10	103501764	103501765	rs7077446	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	FGF8	rs7077446-T	NR	1E-17		0.02622558	[0.02-0.032] unit increase	Affymetrix [NR]	N
1374	chr10	103519783	103519784	rs749694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q24.32	Intergenic	rs749694-A	0.4702	2E-16	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1374	chr10	103519783	103519784	rs749694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q24.32	Intergenic	rs749694-A	0.4702	5E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1374	chr10	103519783	103519784	rs749694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q24.32	Intergenic	rs749694-A	0.4705	6E-28	(MTAG)	0.0181	[0.015-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1374	chr10	103519783	103519784	rs749694	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs749694-A	NR	2E-13		7.365	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1374	chr10	103519783	103519784	rs749694	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	FGF8	rs749694-A	NR	1E-8		5.728	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1374	chr10	103528243	103528244	rs3218248	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.32	FGF8	rs3218248-A	0.0208	4E-8		0.5752	[0.37-0.78] mmHg increase	Affymetrix [NR] (imputed)	N
1374	chr10	103541015	103541016	rs2735421	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	10q24.32		rs2735421-?	NR	6E-9				NR [7857346] (imputed)	N
1374	chr10	103541015	103541016	rs2735421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q24.32		rs2735421-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1374	chr10	103541015	103541016	rs2735421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q24.32	Intergenic	rs2735421-T	0.2991	7E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1374	chr10	103541015	103541016	rs2735421	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs2735421-T	NR	2E-10		6.372	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1374	chr10	103541015	103541016	rs2735421	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	NPM3	rs2735421-T	NR	4E-11		0.021916008	[0.015-0.028] unit increase	Affymetrix [NR]	N
1375	chr10	103550280	103550281	rs149613931	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q24.32	NR	rs149613931-T	0.0566	6E-9		0.028058112	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1375	chr10	103557657	103557658	rs117526247	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	MGEA5	rs117526247-G	0.02855	1E-8		0.03245709	[0.021-0.044] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1375	chr10	103560320	103560321	rs2305192	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q24.32		rs2305192-T	0.6493	6E-10		49.067486	z score increase	NR [6814003]	N
1375	chr10	103565959	103565960	rs3740422	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q24.32	NR	rs3740422-G	0.343936	3E-17		0.056180097	[0.043-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1375	chr10	103565959	103565960	rs3740422	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q24.32	Intergenic	rs3740422-C	0.3506	1E-17		0.0255	[0.02-0.031] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1375	chr10	103565959	103565960	rs3740422	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs3740422-C	NR	1E-16		8.278	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1375	chr10	103582572	103582573	rs79515366	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.32	NR	rs79515366-G	NR	3E-32		0.0584	[0.049-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr10	103587857	103587858	rs67477288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q24.32	NR	rs67477288-C	0.941827	3E-8		0.00976975	[0.0063-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
1375	chr10	103587857	103587858	rs67477288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q24.32	NR	rs67477288-C	0.941827	7E-7		0.00952479	[0.0056-0.0134] unit increase	Affymetrix [16582965] (imputed)	N
1375	chr10	103605713	103605714	rs1044258	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	10q24.32		rs1044258-?	NR	7E-13				NR [7857346] (imputed)	N
1375	chr10	103605713	103605714	rs1044258	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q24.32	C10orf76	rs1044258-T	0.66	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1375	chr10	103605713	103605714	rs1044258	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	C10orf76	rs1044258-T	NR	7E-13		7.176	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1375	chr10	103605713	103605714	rs1044258	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	C10orf76	rs1044258-T	NR	1E-16		0.02553814	[0.02-0.032] unit increase	Affymetrix [NR]	N
1375	chr10	103606121	103606122	rs11596387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs11596387-T	0.0246	2E-8		0.0258	[0.017-0.035] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1375	chr10	103611190	103611191	rs61874116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs61874116-A	0.8876	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1375	chr10	103613097	103613098	rs79550344	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	C10orf76	rs79550344-A	0.05701	5E-11		0.028242642	[0.02-0.037] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1375	chr10	103617850	103617851	rs145225781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.32		rs145225781-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1376	chr10	103690998	103690999	rs10883695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	10q24.32		rs10883695-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1376	chr10	103698704	103698705	rs34014631	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	10q24.32	C10orf76	rs34014631-A	0.06	4E-6	(AA)	0.47	[0.27-0.67] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1376	chr10	103702762	103702763	rs11191156	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	10q24.32	C10orf76	rs11191156-A	0.6483	3E-13		0.1573	[0.12-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1376	chr10	103737192	103737193	rs10786658	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q24.32	NR	rs10786658-?		5E-11		0.0144534	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1376	chr10	103743132	103743133	rs35205878	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q24.32		rs35205878-?	NR	6E-13		0.0153603	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1376	chr10	103744304	103744305	rs188251563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs188251563-A	0.9895	1E-9		0.0428	[0.029-0.057] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1376	chr10	103747137	103747138	rs10883701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.32		rs10883701-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1376	chr10	103799758	103799759	rs183652081	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	10q24.32		rs183652081-A	NR	4E-7		2.4900398	NR	Affymetrix [7846216] (imputed)	N
1376	chr10	103800978	103800979	rs11191191	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	C10orf76	rs11191191-A	NR	4E-9		0.02360145	[0.016-0.031] unit decrease	Affymetrix [NR]	N
1376	chr10	103802407	103802408	rs11191193	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q24.32		rs11191193-A	0.6511	2E-11		56.352448	z score increase	NR [6814003]	N
1376	chr10	103802407	103802408	rs11191193	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	10q24.32	MGEA5, KCNIP2, C10orf76	rs11191193-?	NR	3E-8		0.0143013	[0.0093-0.0193] unit decrease	Affymetrix [25921788] (imputed)	N
1376	chr10	103802407	103802408	rs11191193	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	C10orf76	rs11191193-G	0.3447	9E-13		0.015214661	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1376	chr10	103802407	103802408	rs11191193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q24.32	Intergenic	rs11191193-A	0.6492	2E-28	(MTAG)	0.0265	[0.022-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1376	chr10	103802407	103802408	rs11191193	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	10q24.32	intergenic	rs11191193-A	0.653	6E-7		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1377	chr10	103813133	103813134	rs117883100	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	C10orf76	rs117883100-C	NR	5E-9		0.038843784	[0.026-0.052] unit decrease	Affymetrix [NR]	N
1377	chr10	103815494	103815495	rs67497633	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	C10orf76	rs67497633-A	NR	4E-8		0.022641204	[0.015-0.031] unit decrease	Affymetrix [NR]	N
1377	chr10	103816827	103816828	rs73344830	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q24.32	NR	rs73344830-A	0.398608	4E-10		0.040171012	[0.028-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1377	chr10	103816827	103816828	rs73344830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs73344830-A	0.4181	1E-32		0.017	[0.014-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1377	chr10	103816827	103816828	rs73344830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs73344830-A	0.4181	1E-37	(MTAG)	0.017	[0.014-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1377	chr10	103816827	103816828	rs73344830	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	10q24.32	C10orf76	rs73344830-?	NR	3E-9		5.926	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1377	chr10	103816827	103816828	rs73344830	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q24.32	NR	rs73344830-A	0.4215	1E-11		0.015378921	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1377	chr10	103820552	103820553	rs34761644	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	HPS6	rs34761644-C	0.1668	1E-9		0.016436404	[0.011-0.022] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1377	chr10	103831597	103831598	rs11191205	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q24.32	NR	rs11191205-?		8E-6				Illumina [4322238] (imputed)	N
1377	chr10	103831597	103831598	rs11191205	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	HPS6	rs11191205-A	NR	2E-9		0.02417002	[0.016-0.032] unit decrease	Affymetrix [NR]	N
1377	chr10	103842364	103842365	rs2485630	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	ENSG00000224302	rs2485630-A	NR	6E-9		0.019982817	[0.013-0.027] unit increase	Affymetrix [NR]	N
1377	chr10	103878930	103878931	rs76904484	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.32	LDB1	rs76904484-A	0.0188	2E-10		0.5101	[0.35-0.67] mmHg increase	Affymetrix [NR] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.32	LDB1	rs61874768-T	0.181571	4E-18		0.02551059	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q24.32	Intergenic	rs61874768-T	0.1757	4E-12	(MTAG)	0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q24.32	Intergenic	rs61874768-G	0.8246	8E-11		0.0193	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs61874768-T	NR	5E-10		6.21	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	LDB1	rs61874768-T	NR	1E-8		5.736	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1377	chr10	103880117	103880118	rs61874768	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	LDB1	rs61874768-T	NR	1E-9		0.024648339	[0.017-0.033] unit decrease	Affymetrix [NR]	N
1377	chr10	103880117	103880118	rs61874768	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q24.32	NR	rs61874768-T	0.1828	4E-8		0.016044198	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1377	chr10	103885556	103885557	rs10883710	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.32		rs10883710-T	0.545	6E-21		0.1	[-0.13--0.08] % decrease	Affymetrix [NR] (imputed)	N
1377	chr10	103885556	103885557	rs10883710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.32		rs10883710-C	0.453898	9E-28		0.0273036	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103885556	103885557	rs10883710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.32		rs10883710-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1377	chr10	103885556	103885557	rs10883710	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q24.32	NR	rs10883710-C	0.4601	3E-6	(EA)	0.0291	[0.017-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1377	chr10	103886792	103886793	rs573605538	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q24.32	intergenic	rs573605538-A	0.4182	2E-14		0.0147	[0.011-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1377	chr10	103894723	103894724	rs149687130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q24.32		rs149687130-G	NR	9E-9		0.096	[0.063-0.129] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1377	chr10	103894723	103894724	rs149687130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.32	PPRC1	rs149687130-G	0.00437399999999999	4E-10		0.116039	[0.08-0.152] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103894723	103894724	rs149687130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.32	PPRC1	rs149687130-G	0.00436000000000003	5E-15		0.125584	[0.092-0.159] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103894723	103894724	rs149687130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.32	PPRC1	rs149687130-G	0.00436300000000001	1E-12		0.13027947	[0.095-0.166] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103902058	103902060	rs138828258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.32	PPRC1	rs138828258-C	0.454903	9E-27		0.024099682	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103902058	103902060	rs138828258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q24.32	PPRC1	rs138828258-C	0.455	8E-13		0.02549926	[0.019-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1377	chr10	103908079	103908080	rs3740405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.32	PPRC1	rs3740405-A	0.453793	7E-28		0.024362862	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr10	103928373	103928374	rs17779355	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q24.32	intergenic	rs17779355-A	0.0578	3E-10		0.0292	[0.02-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1377	chr10	103937243	103937244	rs6584485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.32		rs6584485-T	0.847494	2E-13		0.022698035	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr10	103937243	103937244	rs6584485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q24.32	intergenic	rs6584485-T	0.8467	8E-13		0.03524078	[0.026-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1377	chr10	103939304	103939305	rs10883712	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.32	PPRC1	rs10883712-?	NR	4E-6	(betaine)	0.15915638	[0.091-0.227] unit increase	Affymetrix [at least 2500000] (imputed)	N
1378	chr10	103940628	103940629	rs11598856	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q24.32		rs11598856-G	0.748	2E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1378	chr10	103946479	103946480	rs75398587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q24.32		rs75398587-G	NR	2E-9		0.0274	[0.019-0.036] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1378	chr10	103946479	103946480	rs75398587	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q24.32	NOLC1	rs75398587-C	0.931024	3E-83		0.00865039	[0.0078-0.0095] unit increase	Affymetrix [13995440] (imputed)	N
1378	chr10	103946479	103946480	rs75398587	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q24.32	NOLC1	rs75398587-C	0.931224	1E-10		0.025434	[0.018-0.033] unit increase	Affymetrix [NR] (imputed)	N
1378	chr10	103946479	103946480	rs75398587	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q24.32	GBF1	rs75398587-?	NR	1E-8		0.0294	[0.02-0.038] unit decrease	Affymetrix [5701386] (imputed)	N
1378	chr10	103949786	103949787	rs11191237	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs11191237-T	0.2225	2E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr10	103952937	103952938	rs11191238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.32	NR	rs11191238-T	NR	5E-10		0.0247	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1378	chr10	103952937	103952938	rs11191238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q24.32	NR	rs11191238-T	NR	2E-9		0.0237	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1378	chr10	103958650	103958651	rs11593898	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q24.32	NR	rs11593898-C	0.237	4E-11		0.0113594	[0.008-0.0147] unit decrease	NR [9732723] (imputed)	N
1378	chr10	103960350	103960351	rs11594623	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	10q24.32	NOLC1, ELOVL3	rs11594623-C		2E-10		1.026	[NR]	Affymetrix [up to 79000000] (imputed)	N
1378	chr10	103960350	103960351	rs11594623	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.32	NR	rs11594623-C	0.234	9E-21		0.0119416	[0.0094-0.0144] unit increase	NR [9732723] (imputed)	N
1378	chr10	103960350	103960351	rs11594623	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs11594623-C	0.234241	7E-20	(Conditioned on chr10:104640052)	0.0274396	[0.022-0.033] unit increase	NR [~ 10000000] (imputed)	N
1378	chr10	103963396	103963397	rs11599734	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q24.32	NR	rs11599734-C	0.479	6E-8		0.918	[0.89-0.95]	Illumina [11270530] (imputed)	N
1378	chr10	103984059	103984060	rs7083450	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q24.32	NA	rs7083450-T	0.8309	2E-13		0.0165	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1378	chr10	103984389	103984390	rs116093870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q24.32		rs116093870-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q24.32		rs10786662-C	0.5466	3E-11		54.988506	z score increase	NR [6814003]	N
1378	chr10	103989811	103989812	rs10786662	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q24.32	NR	rs10786662-G	0.464215	7E-15		0.04921145	[0.037-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q24.32	PITX3	rs10786662-G	0.44	2E-11	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	PITX3, ELOVL3	rs10786662-C	NR	8E-15		7.766	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	PITX3, ELOVL3	rs10786662-C	NR	6E-19		0.027531674	[0.021-0.034] unit decrease	Affymetrix [NR]	N
1378	chr10	103989811	103989812	rs10786662	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	10q24.32	PITX3, ELOVL3	rs10786662-?	NR	3E-13		7.3	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	10q24.32	PITX3, ELOVL3	rs10786662-?	NR	3E-6		4.678	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1378	chr10	103989811	103989812	rs10786662	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q24.32	NR	rs10786662-C	0.5533	5E-14		0.016871132	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1378	chr10	103992417	103992418	rs140312320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q24.32		rs140312320-A	NR	2E-58		0.0743	[0.065-0.083] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1378	chr10	103992417	103992418	rs140312320	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q24.32	NR	rs140312320-G	0.932876	1E-11		0.0166834	[0.012-0.022] unit increase	Affymetrix [16585854] (imputed)	N
1378	chr10	103992417	103992418	rs140312320	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q24.32	NR	rs140312320-G	0.932876	1E-8		0.0162284	[0.011-0.022] unit increase	Affymetrix [16585866] (imputed)	N
1378	chr10	104005409	104005410	rs2296887	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	10q24.32	NR	rs2296887-C	NR	2E-7		1.084	[1.05-1.11]	Illumina [11933700] (imputed)	N
1378	chr10	104015278	104015279	rs10748818	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	10q24.32	GBF1	rs10748818-A	0.8514	1E-9		0.079	[0.054-0.104] unit decrease	NR [7784415] (imputed)	N
1378	chr10	104019446	104019447	rs10736156	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q24.32	GBF1	rs10736156-C	0.156158	4E-10		0.0118278	[0.0081-0.0155] unit decrease	Affymetrix [12370749]	N
1378	chr10	104021084	104021085	rs4919624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q24.32	Intergenic	rs4919624-A	0.8098	2E-23	(MTAG)	0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr10	104021084	104021085	rs4919624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs4919624-A	0.8022	7E-28		0.0193	[0.016-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr10	104021084	104021085	rs4919624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs4919624-A	0.8022	7E-33	(MTAG)	0.0196	[0.016-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr10	104021540	104021541	rs772031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.32	NR	rs772031-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1378	chr10	104021540	104021541	rs772031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.32		rs772031-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1378	chr10	104025409	104025410	rs12569901	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.32	PITX3	rs12569901-?	NR	7E-7	(TAG 58:9)	0.25467464	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1378	chr10	104034086	104034087	rs2485371	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs2485371-T	NR	6E-14		7.513	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1378	chr10	104044033	104044034	rs72845655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.32		rs72845655-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1378	chr10	104045951	104045952	rs375915173	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10q24.32	GBF1	rs375915173-G	0.828	2E-8		0.0314	[0.02-0.042] unit decrease	Illumina [~ 250000] (imputed)	N
1378	chr10	104050005	104050006	rs2485376	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	10q24.32	NR	rs2485376-?	NR	6E-6		1.004239	[0.57-1.44] unit decrease	Illumina [26659972] (imputed)	N
1378	chr10	104050005	104050006	rs2485376	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	10q24.32	GBF1	rs2485376-A	0.391	3E-8		0.56	[0.36-0.76] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1378	chr10	104057687	104057688	rs2479548	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	GBF1	rs2479548-T	0.3716	2E-8		0.011721242	[0.0076-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1378	chr10	104061217	104061218	rs192735598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q24.32	GBF1	rs192735598-T	0.037517	2E-9		0.035126403	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1378	chr10	104061217	104061218	rs192735598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q24.32	GBF1	rs192735598-T	0.037513	9E-10		0.035822343	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1379	chr10	104071972	104071973	rs72845660	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs72845660-C	NR	8E-10		6.149	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1379	chr10	104071972	104071973	rs72845660	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	GBF1	rs72845660-C	NR	9E-10		0.022791114	[0.015-0.03] unit decrease	Affymetrix [NR]	N
1379	chr10	104078043	104078044	rs144625846	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	10q24.32		rs144625846-G	0.1346	1E-8		0.02046	[0.013-0.027] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1379	chr10	104081348	104081349	rs72845663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q24.32	Intergenic	rs72845663-T	0.3797	8E-14	(MTAG)	0.0138	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1379	chr10	104081348	104081349	rs72845663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q24.32	Intergenic	rs72845663-C	0.6203	6E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1379	chr10	104082687	104082688	rs12772375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q24.32	Intergenic	rs12772375-T	0.4106	6E-16	(MTAG)	0.0189	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1379	chr10	104082687	104082688	rs12772375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q24.32	Intergenic	rs12772375-T	0.4106	2E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1379	chr10	104082687	104082688	rs12772375	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs12772375-T	NR	2E-10		6.388	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1379	chr10	104082687	104082688	rs12772375	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	GBF1	rs12772375-T	NR	4E-9		0.018256338	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1379	chr10	104091095	104091096	rs17780834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	10q24.32		rs17780834-A	0.932768	2E-8		0.0457363	[0.03-0.062] unit increase	NR [11722792] (imputed)	N
1379	chr10	104091095	104091096	rs17780834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	10q24.32		rs17780834-A	0.932768	1E-8		0.0452073	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1379	chr10	104091095	104091096	rs17780834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q24.32		rs17780834-A	0.932768	2E-10		0.0517033	[0.036-0.068] unit decrease	NR [11722792] (imputed)	N
1379	chr10	104120521	104120522	rs11191269	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs11191269-G	0.193294	5E-8	(Conditioned on chr10:103186838, chr10:104403310, chr10:104852121, chr10:103960351, chr10:104640052)	0.017642591	[0.011-0.024] unit increase	NR [~ 10000000] (imputed)	N
1379	chr10	104124054	104124055	rs12354486	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	10q24.32	NR	rs12354486-C	0.8114	2E-8		1.0427477	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1379	chr10	104124604	104124605	rs11191270	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q24.32	GBF1	rs11191270-T	0.1963	1E-12		0.018069567	[0.013-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1379	chr10	104124604	104124605	rs11191270	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q24.32	NR	rs11191270-T	NR	4E-12		6.943	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1379	chr10	104124604	104124605	rs11191270	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	GBF1	rs11191270-T	NR	2E-11		6.688	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1379	chr10	104124604	104124605	rs11191270	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q24.32	GBF1	rs11191270-T	NR	2E-13		0.028393682	[0.021-0.036] unit decrease	Affymetrix [NR]	N
1379	chr10	104127170	104127171	rs2273555	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	10q24.32	GBF1	rs2273555-A	0.608	1E-9		0.1361	[0.092-0.18] kg increase	Affymetrix [at least 17000000] (imputed)	N
1379	chr10	104142799	104142800	rs11191275	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q24.32	NFKB2	rs11191275-?	NR	9E-7	(TAG 58:9)	0.2552191	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1379	chr10	104161474	104161475	rs11574852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q24.32		rs11574852-C	NR	2E-8		0.0347	[0.023-0.047] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1379	chr10	104166465	104166466	rs3781291	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs3781291-T	0.7051	1E-8	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1379	chr10	104171093	104171094	rs55970842	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q24.32		rs55970842-A	0.2015	4E-10		49.881874	z score increase	NR [6814003]	N
1379	chr10	104175648	104175649	rs79931565	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q24.32	PSD	rs79931565-A	0.932816	2E-10		0.0265471	[0.018-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1379	chr10	104191600	104191601	rs1409313	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	10q24.32	CUEDC2	rs1409313-?	NR	4E-7	(ASD paternal model)	1.75	[1.40-2.18]	Illumina [up to 2017939]	N
1379	chr10	104198110	104198111	rs74606364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q24.32		rs74606364-G	0.930907	1E-12		0.0558545	[0.04-0.071] unit increase	NR [11722792] (imputed)	N
1379	chr10	104198527	104198528	rs117793008	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q24.32	MIR146B	rs117793008-A	NR	2E-8		5.58	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1379	chr10	104201069	104201070	rs562974282	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q24.32	MIR146B	rs562974282-G	0.00197999999999998	2E-9		0.211604	[0.14-0.28] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1380	chr10	104207798	104207799	rs927821	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	10q24.32	MIR146B, LOC100505761	rs927821-A		3E-6		1.7024	[0.99-2.42] unit increase	Illumina [2462046] (imputed)	N
1380	chr10	104214266	104214267	rs3929747	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q24.32	NR	rs3929747-?	NR	5E-15		1.0851283	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1380	chr10	104220300	104220301	rs7075281	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.32	NR	rs7075281-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1380	chr10	104220300	104220301	rs7075281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.32		rs7075281-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1380	chr10	104221853	104221854	rs35637354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.32	NR	rs35637354-C	NR	3E-9		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1380	chr10	104225315	104225316	rs11591780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	TMEM180	rs11591780-G	NR	1E-10		0.0182903	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1380	chr10	104225831	104225832	rs10883723	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	10q24.32	NR	rs10883723-C	0.3586	1E-9		1.035	[1.024-1.046]	Affymetrix [15688218] (imputed)	N
1380	chr10	104225831	104225832	rs10883723	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	10q24.32	C10orf95, ACTR1A	rs10883723-C	0.31	2E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1380	chr10	104225940	104225941	rs11592299	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	10q24.32	TMEM180	rs11592299-A	0.2058	7E-9		0.018447189	[0.012-0.025] unit increase	Affymetrix [~ 11515000] (imputed)	N
1380	chr10	104225940	104225941	rs11592299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.32		rs11592299-A	0.1958	4E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1380	chr10	104227660	104227661	rs12763794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs12763794-C	0.473507	9E-20				Affymetrix, Illumina [24649327] (imputed)	N
1380	chr10	104229057	104229057	rs35597970	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	10q24.32	ACTR1A, TMEM180	rs35597970-?	NR	5E-18		1.04	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1380	chr10	104229373	104229373	rs71016384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q24.32	TMEM180	rs71016384-AG	0.208271	2E-15		0.02208862	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1380	chr10	104232715	104232716	rs3740415	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.32	NFKB2, TRIM8, TMEM180	rs3740415-A	0.53	3E-7	(EA)	1.0690618		Affymetrix, Illumina [~ 9000000] (imputed)	N
1380	chr10	104235808	104235809	rs7923675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q24.32	TMEM180	rs7923675-T	0.465999	7E-13		0.015977526	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1380	chr10	104235808	104235809	rs7923675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q24.32	TMEM180	rs7923675-T	0.46599	3E-12		0.015569664	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1380	chr10	104241682	104241683	rs2296580	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	10q24.32	ACTR1A	rs2296580-G	0.702115	4E-11		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1380	chr10	104241682	104241683	rs2296580	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	10q24.32	ACTR1A	rs2296580-G	0.702115	5E-8		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1380	chr10	104244947	104244948	rs3781290	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	ACTR1A	rs3781290-C	NR	4E-11		0.020927	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1380	chr10	104245587	104245588	rs2296587	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q24.32	NR	rs2296587-A	0.3275	3E-16				NR [9056863] (imputed)	N
1380	chr10	104247537	104247538	rs7358269	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10q24.32	AC021860.1, KLF3	rs7358269-?		2E-12				NR [7428630] (imputed)	N
1380	chr10	104262055	104262056	rs184466210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	10q24.32		rs184466210-G	0.00823	5E-9		0.116198	[0.077-0.155] unit decrease	Illumina [13479135] (imputed)	N
1380	chr10	104264106	104264107	rs2274351	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	10q24.32	NR	rs2274351-?	NR	7E-9	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1380	chr10	104266258	104266259	rs111604275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.32		rs111604275-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1380	chr10	104272709	104272710	rs116239977	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q24.32	SUFU	rs116239977-T	0.028302490895834	9E-7	(G_Sporobacter_RNT)	0.417333	[0.25-0.58] unit increase	Illumina [7711310] (imputed)	N
1380	chr10	104277092	104277093	rs75174967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	10q24.32		rs75174967-A	0.148034	2E-10		0.0255	[0.018-0.033] unit increase	Illumina [13478778] (imputed)	N
1380	chr10	104277092	104277093	rs75174967	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10q24.32	SUFU	rs75174967-A	0.134	2E-6		0.356	[-0.13204-0.84404] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1380	chr10	104277092	104277093	rs75174967	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	10q24.32	SUFU	rs75174967-?	NR	2E-9		0.03171	[0.021-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1380	chr10	104277092	104277093	rs75174967	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	10q24.32	SUFU	rs75174967-?	NR	3E-8		0.02849	[0.018-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1380	chr10	104278261	104278265	rs201333164	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	10q24.32	SUFU	rs201333164-?	NR	1E-10		1.062	[1.042-1.081]	Illumina [12845910] (imputed)	N
1380	chr10	104278305	104278306	rs61869602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs61869602-C	NR	1E-8		0.0165068	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1380	chr10	104283509	104283510	rs118107597	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	10q24.32	NR	rs118107597-A		8E-7		0.58	[0.34-0.82] unit increase	Illumina [NR] (imputed)	N
1380	chr10	104285593	104285594	rs12572775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10q24.32	SUFU	rs12572775-A	NR	5E-8		0.0169342	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1380	chr10	104285593	104285594	rs12572775	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	10q24.32	SUFU	rs12572775-A	0.447	8E-15		0.033	[0.025-0.041] unit decrease	NR [NR] (imputed)	N
1380	chr10	104285593	104285594	rs12572775	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	10q24.32	SUFU	rs12572775-A	0.447	8E-15		0.033	[0.025-0.041] unit decrease	NR [7647814] (imputed)	N
1380	chr10	104285593	104285594	rs12572775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.32		rs12572775-?	NR	2E-68				NR [~ 8900000] (imputed)	N
1380	chr10	104287358	104287359	rs17114641	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.32	SUFU	rs17114641-G	0.8951	8E-16		0.4605	[0.35-0.57] mmHg increase	Affymetrix [NR] (imputed)	N
1380	chr10	104300637	104300638	rs9665626	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.32	NR	rs9665626-G	NR	5E-9		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1380	chr10	104313394	104313395	rs10786678	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10q24.32	NR	rs10786678-T	NR	5E-6		0.0819	[0.047-0.117] unit decrease	Illumina [11133794] (imputed)	N
1380	chr10	104315666	104315667	rs10786679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs10786679-A	NR	8E-11		0.0205137	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1380	chr10	104316580	104316581	rs12767683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	10q24.32		rs12767683-A	0.2614	9E-20		0.197724	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1380	chr10	104316580	104316581	rs12767683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	10q24.32		rs12767683-A	0.2614	1E-25		0.227433	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1380	chr10	104316580	104316581	rs12767683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q24.32		rs12767683-A	NR	4E-17		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1380	chr10	104316580	104316581	rs12767683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q24.32	SUFU	rs12767683-A	0.323129	1E-11		0.01599997	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1380	chr10	104316580	104316581	rs12767683	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q24.32	TMEM180, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, WBP1L, CYP17A1, C10orf32, C10orf32-ASMT, AS3MT, CNNM2, NT5C2, INA, PCGF6	rs12767683-?		5E-13				NR [7428630] (imputed)	N
1380	chr10	104318965	104318966	rs7893954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs7893954-G	NR	5E-8		0.0171824	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1380	chr10	104318965	104318966	rs7893954	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.32	NR	rs7893954-?		7E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
1380	chr10	104318965	104318966	rs7893954	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.32	NR	rs7893954-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SUFU	rs3862030-A	0.5599	2E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SUFU	rs3862030-A	0.5599	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SUFU	rs3862030-A	0.5599	2E-8	(women)	0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SUFU	rs3862030-A	0.5599	1E-6		0.0164	[0.0097-0.0231] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	SUFU	rs3862030-A	0.5632	6E-10	(EA)	0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1380	chr10	104327583	104327584	rs3862030	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	SUFU	rs3862030-A	0.5632	2E-10	(EA,women)	0.0275	[0.019-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1380	chr10	104330311	104330311	rs76101236	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q24.32	SUFU	rs76101236-T	0.5713	4E-7		0.0329	[0.02-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1380	chr10	104331989	104331990	rs377690935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q24.32		rs377690935-A	NR	1E-44		0.0237	[0.02-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1381	chr10	104336985	104336986	rs12784963	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	10q24.32	NR	rs12784963-G	0.4295	6E-12		1.042	[1.03-1.053]	Affymetrix [15688218] (imputed)	N
1381	chr10	104337937	104337938	rs113422568	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	10q24.32	NR	rs113422568-A	0.332	7E-12		0.0188826	[0.013-0.024] unit increase	Affymetrix [3505788] (imputed)	N
1381	chr10	104337937	104337938	rs113422568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs113422568-A	0.285111	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
1381	chr10	104337937	104337938	rs113422568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q24.32	NR	rs113422568-A	0.324004	8E-13		0.015653	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1381	chr10	104337937	104337938	rs113422568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	10q24.32	SUFU	rs113422568-A	0.325	3E-9		0.0227279	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1381	chr10	104341434	104341435	rs7899004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	10q24.32		rs7899004-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1381	chr10	104342803	104342804	rs11591571	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDAR	5,364 Icelandic ancestry individuals	NA	10q24.32		rs11591571-A	0.2764	2E-20		0.198529	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1381	chr10	104342803	104342804	rs11591571	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q24.32		rs11591571-A	0.35	1E-25		10.48	z score increase	Affymetrix [9061022] (imputed)	N
1381	chr10	104342803	104342804	rs11591571	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q24.32		rs11591571-A	0.35	1E-15		7.99	z score increase	Affymetrix [9061022] (imputed)	N
1381	chr10	104343427	104343428	rs7475335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q24.32		rs7475335-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1381	chr10	104348693	104348694	rs35879747	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	10q24.32	SUFU	rs35879747-?	NR	4E-9		0.04372	[0.029-0.058] unit increase novel	Illumina [6108953] (imputed)	N
1381	chr10	104348849	104348849	rs34076958	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	10q24.32	NR	rs34076958-TTG	0.233826	2E-15		0.0177	[0.013-0.022] unit increase	Affymetrix [23037915] (imputed)	N
1381	chr10	104359349	104359350	rs3824756	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.32	SUFU	rs3824756-C	0.104	8E-7		0.025	[0.015-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1381	chr10	104359349	104359350	rs3824756	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.32	SUFU	rs3824756-C	0.09	3E-6	(EA)	0.025	[0.015-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1381	chr10	104359883	104359884	rs12762934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q24.32	SUFU	rs12762934-T	0.323302	2E-15		0.019150082	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1381	chr10	104359883	104359884	rs12762934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs12762934-T	0.273129	1E-22				Affymetrix, Illumina [24588908] (imputed)	N
1381	chr10	104359883	104359884	rs12762934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q24.32	NR	rs12762934-T	0.320217	9E-22		0.018837	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1381	chr10	104364541	104364542	rs11191349	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10q24.32	NR	rs11191349-?	NR	6E-6		3721.7747	NR unit decrease	Illumina [2379855]	N
1381	chr10	104372440	104372441	rs10883753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q24.32		rs10883753-T	0.77562	1E-8		0.0231221	[0.015-0.031] unit decrease	Illumina [13479091] (imputed)	N
1381	chr10	104374121	104374122	rs140854610	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.32	Intergenic	rs140854610-T	0.9596	5E-8	(MTAG)	0.0195	[0.012-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr10	104385131	104385132	rs72845807	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.32	SUFU	rs72845807-G	0.734742	4E-8	(64 ms)	0.0343332	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1381	chr10	104386151	104386152	rs7086898	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q24.32	SUFU	rs7086898-A	0.920371	4E-8		0.0138742	[0.0089-0.0188] unit decrease	Affymetrix [12370749]	N
1381	chr10	104386308	104386309	rs4285804	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.32		rs4285804-T	0.441	2E-13		0.08	[0.06-0.1] % increase	Affymetrix [NR] (imputed)	N
1381	chr10	104386308	104386309	rs4285804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs4285804-T	NR	7E-19		0.0254437	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1381	chr10	104386308	104386309	rs4285804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q24.32	SUFU	rs4285804-T	NR	4E-10		0.0179071	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1381	chr10	104386308	104386309	rs4285804	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	10q24.32	SUFU	rs4285804-A	0.56	1E-11		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1381	chr10	104386308	104386309	rs4285804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.32	NR	rs4285804-?	NR	9E-27				Affymetrix [~ 8270000] (imputed)	N
1381	chr10	104386308	104386309	rs4285804	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q24.32	NR	rs4285804-A	0.5528	3E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1381	chr10	104391033	104391034	rs11596235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs11596235-T	NR	3E-10		0.0193682	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1381	chr10	104392579	104392580	rs11594179	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	10q24.32		rs11594179-T	0.21	6E-11		0.0658	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1381	chr10	104392579	104392580	rs11594179	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	10q24.32		rs11594179-T	0.21	3E-10		0.0633	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1381	chr10	104392579	104392580	rs11594179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q24.32		rs11594179-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1381	chr10	104393488	104393489	rs11191356	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	10q24.32	NR	rs11191356-A	0.9056	2E-9		0.114138626	[0.077-0.151] unit increase	NR [NR]	N
1381	chr10	104397269	104397269	rs371094492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	SUFU	rs371094492-AT	NR	4E-9		0.021075	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1381	chr10	104398581	104398582	rs3977756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q24.32	RP11-47A8.5	rs3977756-G	NR	3E-11		0.0191054	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1381	chr10	104398581	104398582	rs3977756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q24.32	RP11-47A8.5	rs3977756-G	NR	6E-13		0.0207661	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1381	chr10	104400111	104400112	rs10883756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q24.32		rs10883756-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1381	chr10	104401485	104401486	rs11191359	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.32	TRIM8	rs11191359-T	0.896	4E-15		0.3377	[0.25-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
1381	chr10	104401631	104401632	rs4146429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	10q24.32	SUFU, TRIM8	rs4146429-C	0.1008	4E-6		0.0318	[0.018-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1381	chr10	104401631	104401632	rs4146429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q24.32	SUFU, TRIM8	rs4146429-?	NR	4E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1381	chr10	104401631	104401632	rs4146429	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q24.32	SUFU, TRIM8	rs4146429-C	0.1008	2E-7		0.0311	[0.019-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1381	chr10	104403309	104403310	rs28408682	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q24.32	NR	rs28408682-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1381	chr10	104403309	104403310	rs28408682	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.32	NR	rs28408682-G	0.6	2E-14		0.00845234	[0.0063-0.0106] unit increase	NR [9732723] (imputed)	N
1381	chr10	104403309	104403310	rs28408682	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs28408682-G	0.600019	1E-10	(Conditioned on chr10:104852121, chr10:103960351, chr10:104640052)	0.016672947	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
1381	chr10	104403309	104403310	rs28408682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q24.32		rs28408682-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1381	chr10	104405849	104405850	rs80146619	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q24.32	TRIM8	rs80146619-G	0.74	7E-24		10.1	z-score increase	Affymetrix [4311822] (imputed)	N
1381	chr10	104413384	104413385	rs12764388	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q24.32	TRIM8	rs12764388-A	0.1134	6E-12		0.02181676	[0.016-0.028] unit increase	Affymetrix [11514654] (imputed)	N
1381	chr10	104414220	104414221	rs3850699	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q24.32	NR	rs3850699-A	0.7	6E-16		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
1381	chr10	104414220	104414221	rs3850699	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	10q24.32	CNNM2, CUEDC2, CYP17A1, FBXL15, LOC100505761, MIR146B, PSD, SFXN2, SUFU, TMEM180, ARL3, ACTR1A, AS3MT, TRIM8, C10orf32, C10orf32-AS3MT, WBP1L, C10orf95	rs3850699-A	0.71	5E-10		1.1	[1.06-1.12]	Illumina [~ 2600000] (imputed)	N
1381	chr10	104420017	104420018	rs10883761	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	10q24.32	NR	rs10883761-A	0.9036	4E-10		0.12101973	[0.083-0.159] unit increase	NR [NR]	N
1381	chr10	104420515	104420516	rs10883762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	TRIM8	rs10883762-C	NR	9E-9		0.0181436	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1381	chr10	104420515	104420516	rs10883762	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.32	NR	rs10883762-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1381	chr10	104420753	104420754	rs61691222	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	10q24.32		rs61691222-?	NR	2E-10		0.0202	unit increase	NR [NR]	N
1381	chr10	104422320	104422321	rs7914158	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q24.32	NR	rs7914158-T	0.3761	8E-10	(Lingual)	11.046281	[7.52-14.57] unit increase	Affymetrix, Illumina [NR]	N
1381	chr10	104423799	104423800	rs7907645	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q24.32	TRIM8	rs7907645-T	NR	2E-11	(EA)	1.155	[1.11-1.2]	Illumina [6627481] (imputed)	N
1381	chr10	104423799	104423800	rs7907645	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	10q24.32	ACTR1A, ARL3, MFSD13A, SFXN2, SUFU, TRIM8, WBP1L	rs7907645-T		9E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [NR]	N
1381	chr10	104425470	104425471	rs7916092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	TRIM8	rs7916092-C	NR	1E-9		0.0201066	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1381	chr10	104426176	104426177	rs4244354	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	10q24.32	ARL3, TRIM8	rs4244354-?		2E-9				NR [6786993] (imputed)	N
1381	chr10	104428715	104428716	rs12262998	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q24.32	NR	rs12262998-C	NR	5E-22		1.073	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1381	chr10	104438564	104438565	rs7077678	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q24.32		rs7077678-C	0.623	3E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1381	chr10	104449443	104449444	rs11191368	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL3	5,363 Icelandic ancestry individuals	NA	10q24.32		rs11191368-T	0.108	4E-36		0.365237	[0.31-0.42] unit decrease	Illumina [7506463] (imputed)	N
1381	chr10	104454699	104454700	rs4556473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	ARL3	rs4556473-C	NR	2E-14		0.0224625	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1381	chr10	104454699	104454700	rs4556473	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	ARL3	rs4556473-C	NR	1E-8		0.0180686	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1381	chr10	104456685	104456686	rs10883765	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	10q24.32	ARL3	rs10883765-?		3E-9		1.0869565	[1.04-1.13]	Illumina [at least 473583] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	ARL3	rs4919669-A	0.47	5E-11	(Japanese)	0.4941	[0.35-0.64] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	ARL3	rs4919669-A	0.4676	2E-7	(Japanese)	0.2697	[0.17-0.37] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	ARL3	rs4919669-A	0.4676	2E-9	(Japanese)	0.3174	[0.21-0.42] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	ARL3	rs4919669-A	0.4676	2E-6	(Japanese)	0.2308	[0.14-0.33] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Systolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	ARL3	rs4919669-A	0.43	3E-8		0.65	[0.41-0.89] mmHg decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1382	chr10	104471974	104471975	rs4919669	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Mean arterial pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	ARL3	rs4919669-A	0.43	3E-8		0.44	[0.28-0.60] mmHg decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1382	chr10	104482329	104482330	rs11191379	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q24.32	ARL3	rs11191379-C	0.89671875	4E-19	(ARL3, 12571_14_3)	0.36153293	[0.28-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1382	chr10	104486973	104486974	rs2244524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q24.32	SFXN2	rs2244524-T	NR	1E-8		0.0162941	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1382	chr10	104486973	104486974	rs2244524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q24.32	SFXN2	rs2244524-T	NR	2E-9		0.0171973	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1382	chr10	104487381	104487382	rs2902548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	10q24.32	NR	rs2902548-C	0.461204	4E-14		0.030971	[0.023-0.039] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1382	chr10	104487381	104487382	rs2902548	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q24.32	NR	rs2902548-?	NR	6E-10		0.0266	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1382	chr10	104487381	104487382	rs2902548	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	10q24.32	SFXN2, WBP1L	rs2902548-T	NR	2E-8		0.14138141	[0.092-0.191] unit decrease	Affymetrix [9576485] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q24.32	SFXN2	rs7917772-G	NR	3E-9		0.0172529	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q24.32	SFXN2	rs7917772-G	NR	2E-10		0.018532	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q24.32	NR	rs7917772-A	0.630809	4E-18		0.016558	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs7917772-A	0.597136	4E-16				Affymetrix, Illumina [23114412] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q24.32	NR	rs7917772-A	0.631343	5E-16		0.016148	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SFXN2	rs7917772-A	0.6136	7E-6		0.0161	[0.009-0.0232] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.32	SFXN2	rs7917772-A	0.6136	5E-8	(women)	0.0253	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q24.32	SFXN2	rs7917772-A	0.6316	2E-9		0.02219608	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	10q24.32	SFXN2, ELOVL3, PITX3, GBF1, NFKB2, PSD, C10orf95, FBXL15, CUEDC2, MIR146B, LOC100505761, TMEM180, ACTR1A, SUFU, TRIM8, ARL3, WBP1L, CYP17A1, AS3MT	rs7917772-A	0.617	6E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	10q24.32	SFXN2, ELOVL3, PITX3, GBF1, NFKB2, PSD, C10orf95, FBXL15, CUEDC2, MIR146B, LOC100505761, TMEM180, ACTR1A, SUFU, TRIM8, ARL3, WBP1L, CYP17A1, AS3MT, C10orf32, C10orf32-AS3Mt, CNNM2, NT5C2	rs7917772-A	0.616636557409798	4E-6	(women)	0.0269	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	10q24.32	ELOVL3, PITX3, GBF1, NFKB2, PSD, C10orf95, FBXL15, CUEDC2, MIR146B, LOC100505761, SFXN2, TMEM180, ACTR1A, SUFU, TRIM8, ARL3, WBP1L, CYP17A1, AS3MT, C10orf32, C10orf32-AS3Mt, CNNM2, NT5C2	rs7917772-A	0.617	8E-6		0.0269	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	SFXN2	rs7917772-A	0.6194	6E-9	(EA, women)	0.0269	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1382	chr10	104487442	104487443	rs7917772	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	SFXN2	rs7917772-A	0.6186	2E-8	(women)	0.0251	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1382	chr10	104487870	104487871	rs2265309	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q24.32	NR	rs2265309-?	NR	9E-6		0.0077467	[0.0043-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1382	chr10	104496597	104496598	rs9645569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	10q24.32	NR	rs9645569-A	0.147	4E-9		0.0184447	[0.012-0.025] unit increase	NR [9732723] (imputed)	N
1382	chr10	104499251	104499251	rs149894803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	SFXN2	rs149894803-AGAGTTGTAAAAGGGAACAACAG	NR	9E-11		0.0199849	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1382	chr10	104509392	104509393	rs2801050	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	10q24.32		rs2801050-?	NR	1E-11				NR [9705931] (imputed)	N
1382	chr10	104513048	104513049	rs11191385	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	10q24.32	WBP1L	rs11191385-G	0.69	5E-8				NR [> 9500000] (imputed)	N
1382	chr10	104515798	104515799	rs4919670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	WBP1L	rs4919670-C	NR	5E-8		0.0179648	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1382	chr10	104526950	104526951	rs11191392	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.32	NR	rs11191392-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1382	chr10	104526950	104526951	rs11191392	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs11191392-A	NR	5E-8		0.01307	[0.0084-0.0178] unit decrease	Affymetrix [10847151] (imputed)	N
1382	chr10	104527979	104527980	rs151137139	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10q24.32	WBP1L	rs151137139-G	NR	2E-7		1.55	[1.09-2.01] unit increase	Illumina [NR] (imputed)	N
1382	chr10	104536359	104536360	rs4147157	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	10q24.32	NR	rs4147157-?	NR	1E-15		1.1235955		Affymetrix, Illumina [9938587] (imputed)	N
1382	chr10	104541119	104541120	rs2253950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	WBP1L	rs2253950-A	NR	1E-12		0.0222784	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1382	chr10	104546182	104546183	rs1475642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q24.32	WBP1L	rs1475642-G	NR	5E-9		0.0196584	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1382	chr10	104547627	104547628	rs9663711	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	10q24.32	WBP1L	rs9663711-A	NR	5E-7		0.09610632	[0.059-0.134] unit increase	Affymetrix [9576485] (imputed)	N
1382	chr10	104548392	104548393	rs2250301	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q24.32	NR	rs2250301-G	0.7481	1E-9		0.0322	[0.022-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1382	chr10	104549223	104549224	rs1018697	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	10q24.32	Intergenic	rs1018697-?		9E-6		1.352997	[NR]	Affymetrix [492217] (imputed)	N
1382	chr10	104553565	104553566	rs284843	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	10q24.32		rs284843-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1382	chr10	104553565	104553566	rs284843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q24.32	WBP1L	rs284843-T	0.248541	2E-10		0.016314875	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1382	chr10	104554528	104554529	rs284844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs284844-G	0.832538	7E-22				Affymetrix, Illumina [23467995] (imputed)	N
1382	chr10	104554528	104554529	rs284844	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.52	4E-11	(Japanese)	0.4946	[0.35-0.64] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	WBP1L	rs284844-A	0.519	7E-12	(Japanese)	0.3544	[0.25-0.46] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.519	7E-7	(Japanese)	0.2622	[0.16-0.37] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.519	5E-6	(Japanese)	0.0589	[0.034-0.084] unit decrease	Illumina [6200000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Systolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.49	1E-11		0.75	[0.53-0.97] mmHg decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Mean arterial pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.49	5E-11		0.49	[0.35-0.63] mmHg decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1382	chr10	104554528	104554529	rs284844	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Diastolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	WBP1L	rs284844-A	0.49	2E-8		0.36	[0.24-0.48] mmHg decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1382	chr10	104558960	104558961	rs2482508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q24.32	WBP1L	rs2482508-C	0.100425	4E-12		0.025601465	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1382	chr10	104558960	104558961	rs2482508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q24.32	NR	rs2482508-T	0.898246	3E-20		0.028642	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1382	chr10	104561077	104561078	rs139247810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.32	WBP1L	rs139247810-G	0.00448300000000002	2E-9		0.113908924	[0.077-0.151] unit decrease	Affymetrix [93095623] (imputed)	N
1382	chr10	104561077	104561078	rs139247810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.32		rs139247810-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1382	chr10	104561355	104561356	rs2482507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q24.32		rs2482507-C	NR	2E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1382	chr10	104563742	104563743	rs2482506	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q24.32	NR	rs2482506-G	0.2389	2E-12		0.0316	[0.023-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1382	chr10	104563807	104563808	rs12356821	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	10q24.32	NR	rs12356821-C	0.148	4E-12		0.0152209	[0.011-0.02] unit increase	NR [9732723] (imputed)	N
1382	chr10	104564144	104564145	rs10710280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q24.32	WBP1L	rs10710280-C	0.620484	3E-10		0.015537168	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1382	chr10	104565199	104565199	rs562752749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	10q24.32	WBP1L	rs562752749-CT	0.0767	6E-11		0.04499068	[0.032-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1382	chr10	104570283	104570284	rs73351820	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	10q24.32	WBP1L	rs73351820-?	NR	3E-10		0.0278	[0.019-0.036] unit increase	Illumina [6108953] (imputed)	N
1382	chr10	104572962	104572963	rs284860	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q24.32	WBP1L	rs284860-T		1E-8		0.013	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1382	chr10	104572962	104572963	rs284860	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	10q24.32	WBP1L	rs284860-T	0.4112	9E-9		0.0104	[0.0069-0.0139] unit increase	Illumina [246328]	N
1382	chr10	104573016	104573017	rs284859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q24.32		rs284859-T	NR	4E-23		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1382	chr10	104573016	104573017	rs284859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q24.32	NR	rs284859-T	NR	6E-17		0.0263	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1382	chr10	104573016	104573017	rs284859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q24.32	NR	rs284859-T	NR	3E-17		0.0265	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1382	chr10	104573016	104573017	rs284859	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q24.32	WBP1L	rs284859-T	0.2072	4E-18		0.0026	[0.0018-0.0034] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1382	chr10	104573016	104573017	rs284859	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q24.32	WBP1L	rs284859-T	0.1934	5E-15		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1382	chr10	104575869	104575870	rs6892	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q24.32	WBP1L, C10orf26, CNNM2	rs6892-G	0.2118	1E-9		6.062	NR z score increase	Illumina [26237160] (imputed)	N
1382	chr10	104575869	104575870	rs6892	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10q24.32	SUFU	rs6892-?	NR	6E-9				Affymetrix, Illumina [at least 5248638] (imputed)	N
1382	chr10	104579255	104579256	rs56119742	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.32	NR	rs56119742-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1382	chr10	104580278	104580279	rs144160547	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q24.32	WBP1L	rs144160547-C	0.856654	2E-41		0.00435779	[0.0037-0.005] unit increase	Affymetrix [13995440] (imputed)	N
1382	chr10	104583394	104583395	rs7910601	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	10q24.32	WBP1L, CYP17A1	rs7910601-G	0.8	9E-10		1.06	[1.03-1.09]	Illumina [5167567] (imputed)	N
1382	chr10	104583931	104583932	rs10883782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs10883782-G	0.163768	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1382	chr10	104583931	104583932	rs10883782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q24.32	NR	rs10883782-G	0.169207	1E-10		0.017755	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1382	chr10	104585124	104585125	rs4919683	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	10q24.32	WBP1L, CYP17A1	rs4919683-?	NR	6E-15		0.03086	[0.023-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1382	chr10	104591392	104591393	rs17115100	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q24.32	CYP17A1	rs17115100-G	0.893936	1E-9		1.07	[1.05-1.10]	NR [8126035] (imputed)	N
1382	chr10	104591392	104591393	rs17115100	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	10q24.32	SFXN2, C10orf32, CNNM2, CYP17A1	rs17115100-G	0.91	7E-8		1.25	[NR]	Illumina [463185]	N
1382	chr10	104592248	104592249	rs4919686	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	10q24.32	NR	rs4919686-A	0.710312	4E-13		0.0234107	[0.017-0.03] unit increase	Affymetrix [16577424] (imputed)	N
1382	chr10	104592674	104592675	rs3740397	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs3740397-C	NR	6E-9		0.01428	[0.0095-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10q24.32	CYP17A1	rs1004467-?	NR	4E-16		0.08905793	NR unit increase	Affymetrix [464137]	N
1382	chr10	104594506	104594507	rs1004467	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q24.32	NR	rs1004467-G	0.0901430511972733	1E-8		0.017146604	[0.011-0.023] unit decrease	NR [NR]	N
1382	chr10	104594506	104594507	rs1004467	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q24.32	NR	rs1004467-G	0.0901430511972733	2E-8		0.010914396	[0.0071-0.0147] unit decrease	NR [NR]	N
1382	chr10	104594506	104594507	rs1004467	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	CYP17A1	rs1004467-A	0.68	1E-10	(Japanese)	0.5119	[0.36-0.67] unit increase	Illumina [6200000] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	CYP17A1	rs1004467-A	0.6765	4E-10	(Japanese)	0.3445	[0.24-0.45] unit increase	Illumina [6200000] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	CYP17A1	rs1004467-A	0.6765	5E-7	(Japanese)	0.2833	[0.17-0.39] unit increase	Illumina [6200000] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.32	CYP17A1	rs1004467-A	0.6765	5E-9	(Japanese)	0.0816	[0.054-0.109] unit increase	Illumina [6200000] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		6E-18		0.725	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		6E-11	(EA)	0.657	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		3E-41		0.833	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		3E-19		0.498	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		1E-13	(EA)	0.499	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		1E-37		0.528	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q24.32	CYP17A1	rs1004467-A		6E-17		0.319	unit increase	Affymetrix [at least 2696785] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Systolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	10q24.32	CYP17A1	rs1004467-A	0.83	6E-6	(Hispanic)	1.15	[0.66-1.64] unit increase	Illumina [up to 196725]	N
1382	chr10	104594506	104594507	rs1004467	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q24.32	CYP17A1, CNNM2, NT5C2, C10orf32, AS3MT	rs1004467-C	0.113	2E-11		0.49103838	[0.35-0.63] unit decrease	Illumina [247039]	N
1382	chr10	104594506	104594507	rs1004467	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q24.32	CYP17A1, CNNM2, NT5C2	rs1004467-A	0.87	8E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1382	chr10	104594506	104594507	rs1004467	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	10q24.32	CYP17A1	rs1004467-A	0.90	1E-10		1.05	[0.74-1.36] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1382	chr10	104595247	104595248	rs4919687	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q24.32	CYP17A1	rs4919687-G	0.8	8E-12		1.14	[1.10-1.19]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1383	chr10	104595848	104595849	rs3824755	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	10q24.32	NR	rs3824755-C	0.8554	9E-7		1.1402	[0.69-1.6] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1383	chr10	104595848	104595849	rs3824755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.32		rs3824755-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1383	chr10	104595848	104595849	rs3824755	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q24.32	CYP17A1	rs3824755-C	0.32	1E-6	(MAP)	0.5	[0.3-0.7] mm of mercury decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1383	chr10	104596923	104596924	rs6163	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	CYP17A1	rs6163-A	0.3892	4E-8	(EA)	0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1383	chr10	104596923	104596924	rs6163	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	CYP17A1	rs6163-A	0.3899	4E-6	(EA, men)	0.0239	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1383	chr10	104596923	104596924	rs6163	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q24.32	CYP17A1	rs6163-A	0.3899	2E-8	(EA)	0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1383	chr10	104598605	104598606	rs10786714	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	2,220 men	NA	10q24.32		rs10786714-C	NR	2E-11		0.0820912	[0.058-0.106] unit increase	Affymetrix [10900000] (imputed)	N
1383	chr10	104598605	104598606	rs10786714	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	10q24.32	NR	rs10786714-C	0.325	2E-9	(men)	0.0951468	[0.064-0.126] unit increase	Affymetrix [up to 8900000] (imputed)	N
1383	chr10	104598605	104598606	rs10786714	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	17-hydroxyprogesterone (17-OHP) levels	1,358 European ancestry men, 712 European ancestry women	NA	10q24.32	NR	rs10786714-C	0.326	2E-7	(men)	0.110168	[0.069-0.151] unit increase	Affymetrix [up to 8900000] (imputed)	N
1383	chr10	104604915	104604916	rs11191416	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	10q24.32	CYP17A1, CNNM2, NT5C2	rs11191416-T	0.89	6E-9		1.08	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1383	chr10	104604915	104604916	rs11191416	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	10q24.32	CYP17A1, CNNM2, NT5C2	rs11191416-T	0.87253	5E-9		1.08	[1.05- 1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1383	chr10	104605520	104605521	rs17724534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q24.32	PTGES3P4	rs17724534-T	NR	3E-8		0.0224675	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1383	chr10	104605520	104605521	rs17724534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.32	NR	rs17724534-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1383	chr10	104610925	104610926	rs4290163	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q24.32	NA	rs4290163-T	0.398	4E-15		0.013	[0.0097-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1383	chr10	104611763	104611764	rs12775431	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q24.32	NR	rs12775431-C	0.248	1E-16		0.0139706	[0.011-0.017] unit decrease	NR [9732723] (imputed)	N
1383	chr10	104612334	104612335	rs11191419	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	10q24.32	AS3MT, BORCS7, BORCS7-ASMT, CNNM2, CYP17A1, NT5C2, SFXN2, WBP1L	rs11191419-?		1E-16		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR]	N
1383	chr10	104612334	104612335	rs11191419	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.32	NR	rs11191419-T	NR	3E-18		1.098901	[NR]	Illumina [7158791] (imputed)	N
1383	chr10	104612334	104612335	rs11191419	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	10q24.32	ARL3, AS3MT, C10orf32, CNNM2, CYP17A1, INA, NT5C2, PCGF6, PDCD11, SFXN2, TAF5, TRIM8, USMG5, WBP1L	rs11191419-T	0.64	6E-19		1.1037527	[1.08-1.13]	Affymetrix, Illumina [9005918] (imputed)	N
1383	chr10	104613354	104613355	rs12219246	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q24.32	NR	rs12219246-A	0.369781	2E-8		0.04099799	[0.027-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1383	chr10	104614349	104614350	rs3824754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.32	C10orf32, C10orf32-ASMT	rs3824754-T	0.084511	5E-16		0.032200187	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1383	chr10	104614349	104614350	rs3824754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs3824754-T	0.134239	5E-19				Affymetrix, Illumina [24332387] (imputed)	N
1383	chr10	104616499	104616500	rs4919690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q24.32		rs4919690-C	NR	5E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q24.32		rs4409766-C	NR	3E-10		0.1084	[0.074-0.142] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q24.32		rs4409766-C	0.28207	6E-12		0.0242431	[0.017-0.031] unit increase	Illumina [13479178] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	10q24.32	NR	rs4409766-?	NR	9E-6		0.8108596	[0.45-1.17] unit decrease	Illumina [32101933] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10q24.32	NR	rs4409766-C	0.0897670258775019	2E-8		0.009066736	[0.0059-0.0122] unit decrease	NR [NR]	N
1383	chr10	104616662	104616663	rs4409766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	C10orf32-ASMT	rs4409766-T	0.72	3E-12	(Japanese)	0.5793	[0.42-0.74] unit increase	Illumina [6200000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	C10orf32, ASMT	rs4409766-T	0.7171	2E-11	(Japanese)	0.3848	[0.27-0.5] unit increase	Illumina [6200000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	C10orf32-ASMT	rs4409766-T	0.7171	3E-8	(Japanese)	0.325	[0.21-0.44] unit increase	Illumina [6200000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.32	C10orf32, ASMT	rs4409766-T	0.7171	4E-10	(Japanese)	0.0934	[0.064-0.123] unit increase	Illumina [6200000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q24.32	NR	rs4409766-T	NR	2E-12		0.029	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q24.32	C10orf32, ASMT	rs4409766-C	0.282	5E-11	(Japanese)	0.025	[0.017-0.033] unit increase	Illumina [6108953] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q24.32	ASMT/C10orf32	rs4409766-C	0.09	6E-17		0.026	[0.02-0.032] unit increase	Illumina [6108953] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Mean arterial pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	C10orf32, AS3MT	rs4409766-T	0.72	1E-11		0.54	[0.38-0.70] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Diastolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.32	C10orf32, AS3MT	rs4409766-T	0.72	8E-9		0.4	[0.26-0.54] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	10q24.32	CYP17A1	rs4409766-T	0.71	6E-17		1.24	[0.95-1.53] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	10q24.32	CYP17A1	rs4409766-T	0.71	7E-13				Affymetrix, Illumina [2485448] (imputed)	N
1383	chr10	104616662	104616663	rs4409766	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	10q24.32	CYP17A1	rs4409766-T	0.71	6E-13		0.59	[0.41-0.77] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1383	chr10	104618694	104618695	rs7096169	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	10q24.32	BORCS7, CNNM2	rs7096169-G	0.31	2E-13		0.016	[0.01-0.022] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1383	chr10	104619292	104619292	rs11441374	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q24.32	NR	rs11441374-A	0.758646	1E-26		0.0156624	[0.013-0.019] unit increase	Affymetrix [16578495] (imputed)	N
1383	chr10	104619292	104619292	rs11441374	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10q24.32	NR	rs11441374-A	0.75895	1E-25		0.024057	[0.019-0.029] unit increase	Affymetrix [16583148] (imputed)	N
1383	chr10	104619327	104619327	rs570995629	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q24.32	NR	rs570995629-I	0.074819	1E-20		0.036799	[0.029-0.045] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1383	chr10	104621067	104621068	rs12241517	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs12241517-?	NR	6E-14				NR [2625067]	N
1383	chr10	104623052	104623053	rs11191421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q24.32	NR	rs11191421-C	0.758129	4E-31		0.0374361	[0.031-0.044] unit increase	Affymetrix [16580851] (imputed)	N
1383	chr10	104623577	104623578	rs9527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	10q24.32	NR	rs9527-C	0.758463	6E-15		0.0230347	[0.017-0.029] unit increase	Affymetrix [16585745] (imputed)	N
1383	chr10	104623577	104623578	rs9527	22383894	Pierce BL	2012-02-23	PLoS Genet	Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh.	Arsenic metabolism	1,313 Bangladeshi ancestry individuals	NA	10q24.32	AS3MT, C10orf32	rs9527-?	NR	3E-9	(DMA%)			Illumina [259597]	N
1383	chr10	104625885	104625886	rs11191424	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q24.32	C10orf32-AS	rs11191424-G	NR	3E-16		1.0775862	[1.06-1.1]	Illumina [6627481] (imputed)	N
1383	chr10	104625885	104625886	rs11191424	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10q24.32	ARL3, AS3MT, C10orf32, C10orf32-AS3MT, CNNM2, WBP1L	rs11191424-G	NR	4E-20		1.0905125	[1.07-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1383	chr10	104628233	104628234	rs7098825	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	10q24.32	NR	rs7098825-?		1E-12				NR [520857]	N
1383	chr10	104628233	104628234	rs7098825	27352405	Balakrishnan P	2016-06-28	Environ Health Perspect	Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).	Arsenic metabolism	2,428 American Indian ancestry individuals	NA	10q24.32	C10orf32, AS3MT	rs7098825-?	0.17	2E-9	(principal component 2 of arsenic species)	1.24	unit increase	Illumina [120975]	N
1383	chr10	104628872	104628873	rs7085104	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7085104-?	NR	2E-18				NR [2625067]	N
1383	chr10	104628872	104628873	rs7085104	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs7085104-?		2E-16				NR [8377093]	N
1383	chr10	104628872	104628873	rs7085104	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA		NR	rs7085104-?		3E-15				NR [8377093]	N
1383	chr10	104628872	104628873	rs7085104	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		AS3MT, C10orf32	rs7085104-?		3E-16				NR [6786993] (imputed)	N
1383	chr10	104628872	104628873	rs7085104	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		C10orf32-AS	rs7085104-A	NR	1E-17	(EA)	1.1025358	[1.08-1.12]	Illumina [6627481] (imputed)	N
1383	chr10	104628872	104628873	rs7085104	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA		C10orf32-ASMT	rs7085104-G	0.3292	4E-11		0.02494309	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1383	chr10	104628872	104628873	rs7085104	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios		MIR1307, SFXN2, ST13P13, PCGF6, PDCD11, NT5C2, TAF5, AS3MT, C10orf32, INA, USMG5, WBP1L, CNNM2, CALHM1, CALHM2, CYP17A1, CALHM3	rs7085104-A	0.645	4E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [9871789]	N
1383	chr10	104629010	104629011	rs12416687	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	10q24.32	AS3MT	rs12416687-T		4E-9	(EA, MAP, Age 50-59)	0.59	[0.39-0.79] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1383	chr10	104633053	104633053	rs548235873	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q24.32	NR	rs548235873-ATTT	0.22128099999999995	2E-24		0.0103833	[0.0084-0.0124] unit increase	Affymetrix [16582909] (imputed)	N
1383	chr10	104633053	104633053	rs548235873	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q24.32	NR	rs548235873-ATTT	0.22168500000000002	7E-11		0.0100989	[0.0072-0.013] unit increase	Affymetrix [16585854] (imputed)	N
1383	chr10	104633053	104633053	rs548235873	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q24.32	NR	rs548235873-ATTT	0.22128099999999995	1E-9		0.00726239	[0.0051-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
1383	chr10	104634473	104634474	rs3740394	27352405	Balakrishnan P	2016-06-28	Environ Health Perspect	Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).	Arsenic metabolism	2,428 American Indian ancestry individuals	NA	10q24.32	AS3MT	rs3740394-?	0.18	2E-38	(principal component 1 of arsenic species)	5.57	unit increase	Illumina [120975]	N
1383	chr10	104635102	104635103	rs12764899	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	10q24.32		rs12764899-?	NR	3E-12		0.021	NR unit decrease	NR [4484088] (imputed)	N
1383	chr10	104635102	104635103	rs12764899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q24.32	AS3MT, C10orf32-ASMT	rs12764899-A	0.225195	2E-10		0.016897673	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1383	chr10	104635102	104635103	rs12764899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs12764899-A	0.245552	8E-10				Affymetrix, Illumina [24558453] (imputed)	N
1383	chr10	104635102	104635103	rs12764899	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q24.32	AS3MT, C10orf32-ASMT	rs12764899-?	NR	3E-20		0.02186565	[0.017-0.027] unit increase	NR [7306098]	N
1383	chr10	104635102	104635103	rs12764899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q24.32		rs12764899-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1383	chr10	104635347	104635348	rs12765002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs12765002-C	0.771073	6E-15				Affymetrix, Illumina [22063850] (imputed)	N
1383	chr10	104635347	104635348	rs12765002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q24.32	NR	rs12765002-C	0.772323	2E-15		0.017802	[0.013-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1383	chr10	104635347	104635348	rs12765002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.32	NR	rs12765002-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1383	chr10	104635347	104635348	rs12765002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q24.32		rs12765002-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1383	chr10	104635347	104635348	rs12765002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs12765002-T	NR	2E-12		0.02012	[0.015-0.026] unit decrease	Affymetrix [10847151] (imputed)	N
1383	chr10	104636275	104636276	rs77335224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	10q24.32		rs77335224-T	NR	5E-15		0.0896	[0.067-0.112] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1383	chr10	104636275	104636276	rs77335224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	10q24.32		rs77335224-T	0.245126703	1E-9		0.09537856	[0.065-0.126] unit decrease	Illumina [13426705] (imputed)	N
1383	chr10	104636275	104636276	rs77335224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.32	AS3MT, C10orf32-ASMT	rs77335224-T	0.086405	2E-12		0.027921274	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1383	chr10	104636275	104636276	rs77335224	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10q24.32	NA	rs77335224-T	0.0901	1E-11		0.0225	[0.016-0.029] unit increase	NR [~ 27400000] (imputed)	N
1383	chr10	104636275	104636276	rs77335224	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	10q24.32	NR	rs77335224-T	NR	5E-9		5.859	z score decrease	Affymetrix [10847151] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q24.32	NR	rs3740393-C	0.138	1E-17				NR [9056863] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.32	AS3MT, C10orf32-ASMT	rs3740393-C	0.137699	4E-24		0.033193603	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	10q24.32	NR	rs3740393-?		2E-8				NR [8377093]	N
1383	chr10	104636654	104636655	rs3740393	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	10q24.32	AS3MT	rs3740393-C	0.136347	6E-10		0.07248351	[0.05-0.095] unit decrease	Affymetrix [7288503] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	10q24.32		rs3740393-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs3740393-C	NR	4E-12		0.02409	[0.017-0.031] unit decrease	Affymetrix [10847151] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	10q24.32	NR	rs3740393-C	NR	1E-9		6.062	z score decrease	Affymetrix [10847151] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	10q24.32	SFXN2	rs3740393-C	0.140572	2E-9		6.0	z score decrease	NR [10847151] (imputed)	N
1383	chr10	104636654	104636655	rs3740393	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	10q24.32	C10orf32-ASMT, C10orf32, CYP17A1, CNNM2	rs3740393-C	0.21	6E-6		0.13	[0.075-0.185] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1383	chr10	104637507	104637508	rs11191434	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	10q24.32	C10orf32, ASMT, AS3MT	rs11191434-T	0.08847	4E-6		0.01985371	[0.01-0.03] unit increase	NR [9417325] (imputed)	N
1383	chr10	104637601	104637602	rs11191436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q24.32		rs11191436-T	NR	8E-15		0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1383	chr10	104637601	104637602	rs11191436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	10q24.32		rs11191436-T	0.200429	5E-14		0.0343022	[0.025-0.043] unit decrease	Illumina [13476299] (imputed)	N
1383	chr10	104638479	104638480	rs3740390	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	163,984 British ancestry men	NA	10q24.32	NR	rs3740390-T	0.07844	5E-11		0.04253	[0.03-0.055] unit increase	Affymetrix [10549349] (imputed)	N
1383	chr10	104638479	104638480	rs3740390	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q24.32	AS3MT, C10orf32-ASMT	rs3740390-T	0.1066	5E-15		0.0662	[0.05-0.083] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1383	chr10	104638479	104638480	rs3740390	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q24.32	AS3MT, C10orf32-ASMT	rs3740390-T	0.1106	4E-15		0.0719	[0.054-0.09] unit decrease	NR [8041861] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q24.32	AS3MT, BORCS	rs12244388-G	0.66257	6E-10		0.0136117	[0.0093-0.0179] unit increase	NR [16516521] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	10q24.32		rs12244388-?	NR	4E-8		0.0189	NR unit decrease	NR [4428082] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	10q24.32	NR	rs12244388-A	0.3357	2E-11		1.036	[1.03-1.05]	NR [8968716] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q24.32		rs12244388-G	0.661	1E-19		0.019	[0.015-0.023] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	10q24.32	NR	rs12244388-?	NR	2E-18				Illumina [up to 5582932] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	10q24.32	AS3MT	rs12244388-A	0.3368	1E-15		0.021866972	[0.017-0.027] unit increase	Affymetrix [~ 11515000] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q24.32	NR	rs12244388-A	0.35	9E-29		0.0125564	[0.01-0.015] unit increase	NR [9732723] (imputed)	N
1383	chr10	104640051	104640052	rs12244388	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs12244388-A	0.35	4E-22		0.02581525	[0.021-0.031] unit increase	NR [~ 10000000] (imputed)	N
1383	chr10	104642236	104642237	rs72841270	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs72841270-?	NR	2E-8				NR [2625067]	N
1383	chr10	104642236	104642237	rs72841270	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs72841270-?		6E-9				NR [8377093]	N
1383	chr10	104642236	104642237	rs72841270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA			rs72841270-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1383	chr10	104642846	104642847	rs202100735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	10q24.32	NR	rs202100735-A	0.8651	9E-16		0.062517	[0.047-0.078] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1383	chr10	104643240	104643241	rs12783782	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10q24.32	AS3MT, C10orf32-AS3MT	rs12783782-A	0.257	1E-14		0.0202	[0.015-0.025] unit increase	Illumina [~ 250000] (imputed)	N
1383	chr10	104643595	104643596	rs11191442	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q24.32	AS3MT	rs11191442-A	0.263	4E-8		0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1383	chr10	104647848	104647849	rs12768205	27352405	Balakrishnan P	2016-06-28	Environ Health Perspect	Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).	Arsenic metabolism	2,428 American Indian ancestry individuals	NA	10q24.32	AS3MT	rs12768205-?	0.27	8E-8	(percent inorganic arsenic)	0.14	unit decrease	Illumina [120975]	N
1383	chr10	104647848	104647849	rs12768205	27352405	Balakrishnan P	2016-06-28	Environ Health Perspect	Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).	Arsenic metabolism	2,428 American Indian ancestry individuals	NA	10q24.32	AS3MT	rs12768205-?	0.27	6E-24	(percent dimethylarsinate)	0.17	unit increase	Illumina [120975]	N
1383	chr10	104647848	104647849	rs12768205	27352405	Balakrishnan P	2016-06-28	Environ Health Perspect	Association of Cardiometabolic Genes with Arsenic Metabolism Biomarkers in American Indian Communities: The Strong Heart Family Study (SHFS).	Arsenic metabolism	2,428 American Indian ancestry individuals	NA	10q24.32	AS3MT	rs12768205-?	0.27	1E-15	(percent monomethylarsonate)	0.15	unit decrease	Illumina [120975]	N
1383	chr10	104649374	104649375	rs7476192	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q24.32	NR	rs7476192-?	NR	9E-19		1.08893	[1.07-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1383	chr10	104649728	104649729	rs7100709	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	10q24.32		rs7100709-A	0.72	2E-8		0.07	unit decrease	Illumina [2093892] (imputed)	N
1383	chr10	104649728	104649729	rs7100709	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	10q24.32		rs7100709-A	0.72	2E-10		0.1	unit decrease	Illumina [2398641] (imputed)	N
1383	chr10	104652322	104652323	rs11191447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q24.32		rs11191447-T	NR	5E-16		0.102	[0.077-0.127] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1383	chr10	104652322	104652323	rs11191447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q24.32		rs11191447-T	0.248872362	2E-13		0.11608852	[0.085-0.147] unit decrease	Illumina [13427135] (imputed)	N
1383	chr10	104652322	104652323	rs11191447	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q24.32	BORCS7-ASMT	rs11191447-?	NR	1E-23		0.0735385	[0.059-0.088] unit decrease	Illumina [4804024] (imputed)	N
1383	chr10	104654382	104654383	rs10786721	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	10q24.32	CNNM2	rs10786721-A	0.3924	1E-9		0.014717075	[0.01-0.0195] unit increase	Affymetrix [11515109] (imputed)	N
1383	chr10	104654576	104654577	rs10883795	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	10q24.32	AS3MT	rs10883795-?		8E-10		1.15	[1.10-1.20]	Illumina [at least 473583] (imputed)	N
1383	chr10	104657299	104657300	rs12219346	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q24.32		rs12219346-T	0.6922	1E-7		38.346725	z score increase	NR [6814003]	N
1383	chr10	104659017	104659018	rs7909591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10q24.32	AS3MT	rs7909591-T	0.31	6E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1383	chr10	104659017	104659018	rs7909591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10q24.32	AS3MT	rs7909591-T	0.31	1E-29	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1383	chr10	104659017	104659018	rs7909591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	10q24.32	AS3MT	rs7909591-T	0.29	4E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1383	chr10	104659017	104659018	rs7909591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q24.32	AS3MT	rs7909591-T	0.31	8E-11	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1383	chr10	104659017	104659018	rs7909591	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q24.32	AS3MT	rs7909591-T	0.28	7E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1383	chr10	104660003	104660004	rs11191454	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q24.32	AS3MT	rs11191454-?	0.91	1E-8		1.13	[1.08-1.18]	NR [1252901] (imputed)	N
1383	chr10	104662457	104662458	rs7897654	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	10q24.32	NT5C2, AS3MT, CNNM2	rs7897654-T	0.30	3E-7		1.2	[NR]	NR [1085772] (imputed)	N
1383	chr10	104669620	104669621	rs9663140	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	10q24.32	BORCS7-ASMT, CNNM2	rs9663140-?	NR	3E-9		0.02488	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1383	chr10	104670831	104670832	rs28606370	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q24.32		rs28606370-C	0.662	1E-33		0.015	[0.013-0.017] unit decrease	NR [NR] (imputed)	N
1383	chr10	104670831	104670832	rs28606370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q24.32	RP11-724N1.1	rs28606370-A	0.335988	4E-11		0.015431068	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1383	chr10	104670831	104670832	rs28606370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs28606370-A	0.367377	8E-12				Affymetrix, Illumina [24653286] (imputed)	N
1383	chr10	104670831	104670832	rs28606370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q24.32	NR	rs28606370-A	0.34092	1E-13		0.014485	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1383	chr10	104671211	104671212	rs10883800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q24.32		rs10883800-C	NR	9E-34		0.027	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1383	chr10	104684543	104684544	rs78821730	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	10q24.32	NR	rs78821730-G	NR	3E-8		1.0416667		NR [NR] (imputed)	N
1383	chr10	104684543	104684544	rs78821730	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	10q24.32	NT5C2	rs78821730-A		1E-7		0.0058	unit increase	Illumina [at least 200000]	N
1383	chr10	104685298	104685299	rs12411886	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	10q24.32	NA	rs12411886-C	0.9197	7E-10	(Female)	1.0881393	[1.06-1.12]	Affymetrix, Illumina [NR] (imputed)	N
1383	chr10	104697780	104697781	rs12414777	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q24.32	CNNM2	rs12414777-T	0.201	2E-12		0.055	[0.039-0.071] unit decrease	Affymetrix [7947838] (imputed)	N
1383	chr10	104698208	104698209	rs11191467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.32	NR	rs11191467-A	0.287621	8E-10				Affymetrix, Illumina [21126107] (imputed)	N
1383	chr10	104698977	104698978	rs4919694	22383894	Pierce BL	2012-02-23	PLoS Genet	Genome-wide association study identifies chromosome 10q24.32 variants associated with arsenic metabolism and toxicity phenotypes in Bangladesh.	Arsenic metabolism	1,313 Bangladeshi ancestry individuals	NA	10q24.32	CNNM2	rs4919694-?	NR	3E-8	(MMA%)			Illumina [259597]	N
1383	chr10	104700443	104700444	rs7093087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q24.32		rs7093087-A	NR	4E-13		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1383	chr10	104704016	104704017	rs4919695	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	10q24.32	USMG5	rs4919695-A	0.395999	2E-13		7.342	unit increase	NR [10847151] (imputed)	N
1383	chr10	104704016	104704017	rs4919695	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	10q24.32	TRIM8	rs4919695-A	0.395999	1E-13		7.42	z score increase	NR [10847151] (imputed)	N
1383	chr10	104707015	104707016	rs11191472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	10q24.32		rs11191472-T	0.26140034	2E-12		0.08813854	[0.064-0.113] unit decrease	Illumina [13134967] (imputed)	N
1383	chr10	104708311	104708312	rs12783467	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q24.32	NR	rs12783467-?	NR	7E-11		0.03628	[0.025-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1383	chr10	104719095	104719096	rs12413409	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	10q24.32	CNNM2	rs12413409-A	0.39	5E-9		0.85	[0.81-0.9]	Affymetrix [NR]	N
1383	chr10	104719095	104719096	rs12413409	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10q24.32	CNNM2	rs12413409-?	NR	1E-17		0.09777913	NR unit increase	Affymetrix [464137]	N
1383	chr10	104719095	104719096	rs12413409	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	10q24.32	NT5C2, CNNM2, YP17A1	rs12413409-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1383	chr10	104719095	104719096	rs12413409	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	10q24.32	NT5C2, CNNM2, CYP17A1	rs12413409-?	NR	1E-6		1.1236	[1.08-1.19]	Illumina [575000] (imputed)	N
1383	chr10	104719095	104719096	rs12413409	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	10q24.32	NT5C2, CNNM2, CYP17A1	rs12413409-G	0.89	1E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1383	chr10	104719095	104719096	rs12413409	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	10q24.32	intergenic	rs12413409-?	NR	4E-6				Illumina [574919]	N
1383	chr10	104719095	104719096	rs12413409	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	10q24.32	CNNM2	rs12413409-G	0.91	1E-9		1.29	[1.19-1.40]	Illumina [831534] (imputed)	N
1383	chr10	104723619	104723620	rs11191479	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	10q24.32		rs11191479-?	NR	8E-11				NR [2625067]	N
1384	chr10	104734622	104734623	rs11191487	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	10q24.32	CNNM2	rs11191487-G		6E-16		1.04	[NR]	Affymetrix [up to 79000000] (imputed)	N
1384	chr10	104738010	104738011	rs74808043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q24.32	NR	rs74808043-T	NR	3E-11		0.0621	[0.044-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1384	chr10	104741113	104741114	rs12260436	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs12260436-C	NR	4E-9		0.01615	[0.011-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1384	chr10	104741582	104741583	rs55833108	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q24.32	CNNM2	rs55833108-T	NR	5E-8	(EA)	1.0764263	[1.05-1.1]	Illumina [6627481] (imputed)	N
1384	chr10	104741582	104741583	rs55833108	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.32	NR	rs55833108-T	NR	1E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
1384	chr10	104744224	104744225	rs17115317	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.32	NR	rs17115317-A	0.01045	1E-9	(EMILIN2)	0.1401	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr10	104746648	104746649	rs3902934	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	10q24.32	CNNM2	rs3902934-A	NR	2E-8		0.0085057	[0.0055-0.0115] unit decrease	Affymetrix [18485882] (imputed)	N
1384	chr10	104748008	104748009	rs77860422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q24.32		rs77860422-A	NR	9E-25		0.0248	[0.02-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1384	chr10	104748008	104748009	rs77860422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q24.32		rs77860422-A	0.259855	2E-16		0.0253718	[0.019-0.031] unit increase	Illumina [13479924] (imputed)	N
1384	chr10	104748008	104748009	rs77860422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q24.32		rs77860422-A	NR	2E-17		0.0237	[0.018-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1384	chr10	104748458	104748459	rs1890184	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.32	NR	rs1890184-C	NR	2E-13		0.01785	[0.013-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
1384	chr10	104748717	104748718	rs1890185	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q24.32	intergenic	rs1890185-G	0.39	4E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1384	chr10	104749724	104749725	rs10883816	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	10q24.32		rs10883816-?	NR	4E-11		0.0218	NR unit decrease	NR [4425810] (imputed)	N
1384	chr10	104755430	104755431	rs10883817	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	10q24.32	CNNM2, AS3MT, NT5C2	rs10883817-A	0.406	1E-6		1.27	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1384	chr10	104764270	104764271	rs11191499	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	10q24.32	NR	rs11191499-T	NR	1E-9		6.074	NR z score increase	NR [NR]	N
1384	chr10	104764270	104764271	rs11191499	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	10q24.32	NR	rs11191499-T	0.9196	1E-9		0.046023075	[0.031-0.061] unit increase	NR [NR]	N
1384	chr10	104765493	104765494	rs11191502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q24.32	CNNM2	rs11191502-G	0.077823	7E-11		0.026858388	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104771211	104771211	rs111326718	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	10q24.32	CNNM2	rs111326718-AAAAAT	0.3928	1E-51		0.05551689	[0.048-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1384	chr10	104773363	104773364	rs11191514	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q24.32	NR	rs11191514-T	0.0904364237060407	3E-11		0.031324036	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1384	chr10	104775907	104775908	rs7914558	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q24.32	CNNM2	rs7914558-?	0.587	2E-9	(Modelling analysis)			NR [1252901] (imputed)	N
1384	chr10	104775907	104775908	rs7914558	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q24.32	CNNM2	rs7914558-G	0.59	2E-8		1.22	[1.15-1.29]	Affymetrix, Illumina [1252901] (imputed)	N
1384	chr10	104791594	104791595	rs200510190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.32	CNNM2	rs200510190-G	0.359465	4E-27		0.0286686	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104791594	104791595	rs200510190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.32	CNNM2	rs200510190-G	0.359498	3E-11		0.018832173	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104791594	104791595	rs200510190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	10q24.32	CNNM2	rs200510190-G	0.3603	5E-17		0.03124481	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1384	chr10	104791594	104791595	rs200510190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	10q24.32	CNNM2	rs200510190-G	0.3602	2E-21		0.03552259	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1384	chr10	104793647	104793648	rs75970938	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	10q24.32	NR	rs75970938-?	NR	2E-25		1.1336	[1.11-1.16]	Affymetrix, Illumina [12447948] (imputed)	N
1384	chr10	104793903	104793904	rs79668541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q24.32		rs79668541-T	NR	8E-24		0.073	[0.059-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1384	chr10	104793903	104793904	rs79668541	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q24.32	CNNM2	rs79668541-T	0.0759178	2E-16		0.09327025	[0.071-0.116] unit decrease	Affymetrix [7288503] (imputed)	N
1384	chr10	104794085	104794086	rs76752100	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	NR	rs76752100-T	0.2663	4E-22	(East Asian)	0.4858	[0.39-0.58] unit decrease	Illumina [6200000] (imputed)	N
1384	chr10	104795885	104795885	rs140473396	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.32	CNNM2	rs140473396-GAC	0.9023	3E-57		0.9773	[0.86-1.1] mmHg increase	Affymetrix [NR] (imputed)	N
1384	chr10	104801865	104801866	rs12255761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	10q24.32	CNNM2	rs12255761-T	0.155795	3E-10		0.0185149	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104801865	104801866	rs12255761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	10q24.32	NR	rs12255761-T	0.15614	6E-10		0.017071	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1384	chr10	104806653	104806654	rs7094843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q24.32	CNNM2	rs7094843-C	0.387073	6E-156		0.061232675	[0.057-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104806653	104806654	rs7094843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q24.32	CNNM2	rs7094843-C	0.387067	3E-147		0.059499852	[0.055-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104806653	104806654	rs7094843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q24.32	CNNM2	rs7094843-C	0.387096	4E-138		0.05725216	[0.053-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104806653	104806654	rs7094843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q24.32	CNNM2	rs7094843-C	0.387097	6E-135		0.056594796	[0.052-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1384	chr10	104812896	104812897	rs10883824	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q24.32		rs10883824-G	0.41	2E-26		10.65	z score increase	Affymetrix [9061022] (imputed)	N
1384	chr10	104817708	104817709	rs11191537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q24.32		rs11191537-G	NR	2E-8		0.0161	[0.011-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q24.32		rs1926032-T	0.271121405	2E-9		0.08260655	[0.056-0.109] unit decrease	Illumina [13427711] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	10q24.32		rs1926032-T	NR	7E-10		0.0813	[0.055-0.107] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	10q24.32		rs1926032-T	0.267800695	2E-9		0.08320116	[0.056-0.11] unit decrease	Illumina [13429980] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	10q24.32		rs1926032-T	NR	1E-18		0.091	[0.071-0.111] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q24.32		rs1926032-T	0.267800695	2E-11		0.06401733	[0.045-0.083] unit decrease	Illumina [13134967] (imputed)	N
1384	chr10	104829468	104829469	rs1926032	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	10q24.32	CNNM2	rs1926032-?	NR	7E-15		0.0891003	[0.067-0.112] unit decrease	Illumina [19707525] (imputed)	N
1384	chr10	104833047	104833048	rs3781283	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.32	NR	rs3781283-A	0.02962	6E-9	(HMGCS1)	0.1597	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr10	104833047	104833048	rs3781283	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.32	NR	rs3781283-A	0.02962	3E-11	(ACAT2)	0.6744	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr10	104833047	104833048	rs3781283	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.32	NR	rs3781283-A	0.02962	2E-8	(MVD)	0.04805	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr10	104833047	104833048	rs3781283	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.32	NR	rs3781283-A	0.02962	1E-10	(FDPS)	0.3669	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr10	104835918	104835919	rs943037	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q24.32	CYP17A1, NT5C2	rs943037-T	0.087	2E-27		1.133	[0.93-1.34] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1384	chr10	104835918	104835919	rs943037	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q24.32	CYP17A1, NT5C2	rs943037-T	0.087	4E-14		0.482	[0.36-0.61] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1384	chr10	104837815	104837816	rs1046411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.32		rs1046411-?	NR	2E-41				NR [~ 8900000] (imputed)	N
1384	chr10	104839151	104839152	rs943035	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	10q24.32	NR	rs943035-T	0.390677	8E-13		7.165	unit increase	NR [10847151] (imputed)	N
1384	chr10	104840969	104840970	rs7921574	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	10q24.32	NR	rs7921574-T	0.390411	3E-13		7.29	z score increase	NR [10847151] (imputed)	N
1384	chr10	104844871	104844872	rs7092200	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q24.32	NT5C2	rs7092200-T	0.5847	4E-22		0.019713078	[0.016-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	10q24.32	CNNM2	rs11191548-C	0.18	1E-8		0.86	[0.81-0.9]	Affymetrix [NR]	N
1384	chr10	104846177	104846178	rs11191548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	10q24.32	NR	rs11191548-?	NR	2E-6		1.060987	[0.63-1.5] unit decrease	Illumina [32101933] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	CNNM2	rs11191548-T	0.74	8E-15	(Japanese)	0.6605	[0.49-0.83] unit increase	Illumina [6200000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.32	CNNM2	rs11191548-T	0.7382	1E-12	(Japanese)	0.4168	[0.3-0.53] unit increase	Illumina [6200000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	CNNM2	rs11191548-T	0.7382	1E-10	(Japanese)	0.3857	[0.27-0.5] unit increase	Illumina [6200000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.32	CNNM2	rs11191548-T	0.7382	1E-12	(Japanese)	0.1064	[0.077-0.136] unit increase	Illumina [6200000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.32	CNNM2	rs11191548-T	0.7382	5E-6	(Japanese)	0.2476	[0.14-0.35] unit increase	Illumina [6200000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q24.32	CYP17A1, NT5C2, CNNM2-AS3MT	rs11191548-?	NR	1E-45				Affymetrix, Illumina [18800000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q24.32	CYP17A1, NT5C2, CNNM2-AS3MT	rs11191548-?		1E-17				Affymetrix, Illumina [18800000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q24.32	CYP17A1, NT5C2	rs11191548-C	0.089	1E-17	(EA, initial)	1.082	[0.83-1.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q24.32	CYP17A1, NT5C2	rs11191548-C	0.089	9E-12	(EA, initial)	0.562	[0.4-0.72] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q24.32	CYP17A1, NT5C2	rs11191548-C	0.089	1E-9	(EA, initial)	0.468	[0.32-0.62] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q24.32	CYP17A1, NT5C2	rs11191548-T	0.8881	3E-20		0.0583	unit increase	Illumina [242296]	N
1384	chr10	104846177	104846178	rs11191548	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	10q24.32	CNMM2, NT5C2, CYP17A1	rs11191548-T	0.7977	3E-9		0.6983	[0.47-0.93] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	10q24.32	CNMM2, NT5C2, CYP17A1	rs11191548-T	0.7391	1E-7	(East Asians)	0.9441	[0.6-1.29] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	10q24.32	NT5C2, CYP17A1	rs11191548-T	0.91	7E-26		1.095	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q24.32	NT5C2, CYP17A1	rs11191548-T	0.94	8E-11	(Pulse Pressure)	0.529	[0.37-0.69] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	10q24.32	NT5C2, CNNM2, CYP17A1	rs11191548-T	0.74	7E-12	(Diastolic)	0.58	[0.42-0.74] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	10q24.32	NT5C2, CNNM2, CYP17A1	rs11191548-T	0.74	4E-17	(Systolic)	1.18	[0.91-1.45] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1384	chr10	104846177	104846178	rs11191548	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	10q24.32	NT5C2, AS3MT, CNNM2, CYP17A1	rs11191548-T	0.91	7E-24		1.16	[0.92-1.40] mm Hg increase	Affymetrix, Illumina [2497993] (imputed)	N
1384	chr10	104849115	104849116	rs10786736	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q24.32	NT5C2	rs10786736-G	NR	8E-12		1.0952903	[1.07-1.12]	Illumina [6627481] (imputed)	N
1384	chr10	104849115	104849116	rs10786736	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	10q24.32	NT5C2	rs10786736-G	NR	5E-11	(EA)	1.1234692	[1.09-1.16]	Illumina [6627481] (imputed)	N
1384	chr10	104849115	104849116	rs10786736	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	10q24.32	C10orf32, INA, NT5C2	rs10786736-G	NR	4E-17		1.1148272	[1.09-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1384	chr10	104852120	104852121	rs111842178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q24.32	NR	rs111842178-G	0.231008	2E-12	(Conditioned on chr10:103960351, chr10:104640052)	0.022452671	[0.016-0.029] unit increase	NR [~ 10000000] (imputed)	N
1384	chr10	104855260	104855261	rs72843998	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs72843998-?	NR	4E-8				NR [2625067]	N
1384	chr10	104855277	104855278	rs11191554	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q24.32	NR	rs11191554-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
1384	chr10	104855655	104855656	rs1926030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q24.32		rs1926030-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1384	chr10	104857217	104857218	rs10786737	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q24.32	NR	rs10786737-?		4E-6	(African)			Illumina [~ 5140000] (imputed)	N
1384	chr10	104857217	104857218	rs10786737	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q24.32	NR	rs10786737-?		4E-6	(African)			Illumina [~ 5140000] (imputed)	N
1385	chr10	104866862	104866863	rs7896519	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q24.33	NR	rs7896519-C	0.362823	5E-11		0.04821888	[0.034-0.063] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1385	chr10	104866957	104866958	rs7896547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	10q24.33	NT5C2	rs7896547-G	0.3906	3E-55		0.05746989	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1385	chr10	104866957	104866958	rs7896547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	10q24.33	NT5C2	rs7896547-G	0.3905	4E-42		0.04985184	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1385	chr10	104866957	104866958	rs7896547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	10q24.33	NT5C2	rs7896547-G	0.3905	1E-40		0.04894108	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1385	chr10	104867685	104867686	rs11191559	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	10q24.33	NT5C2	rs11191559-C	0.73	2E-8		1.13	[1.08-1.18]	Illumina [5932413] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q24.33	NR	rs11191560-T	NR	8E-15		0.033	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	2E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	7E-6	(women)	0.0371	[0.021-0.053] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	4E-6		0.0288	[0.017-0.041] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	5E-7		0.028	[0.017-0.039] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q24.33	NT5C2	rs11191560-T	0.9015	5E-6	(women)	0.0337	[0.019-0.048] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104869037	104869038	rs11191560	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.33	NT5C2	rs11191560-C	0.091	2E-9		0.031	[0.021-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1385	chr10	104869037	104869038	rs11191560	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q24.33	NT5C2	rs11191560-C	0.089	8E-9	(EA)	0.031	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1385	chr10	104871278	104871279	rs10883832	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q24.33	NT5C2	rs10883832-G	0.0875	3E-24				Affymetrix, Illumina [2331072] (imputed)	N
1385	chr10	104871278	104871279	rs10883832	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q24.33	NT5C2	rs10883832-G	0.0875	9E-16				Affymetrix, Illumina [2331072] (imputed)	N
1385	chr10	104871278	104871279	rs10883832	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	10q24.33	NT5C2, CNNM2	rs10883832-?		3E-14				NR [6786993] (imputed)	N
1385	chr10	104871278	104871279	rs10883832	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.33	NR	rs10883832-T	NR	2E-16		1.16	[NR]	Illumina [7158791] (imputed)	N
1385	chr10	104879846	104879847	rs2148200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.33	NR	rs2148200-A	0.292349	8E-51				Affymetrix, Illumina [24246363] (imputed)	N
1385	chr10	104879846	104879847	rs2148200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.33	NR	rs2148200-A	0.289709	1E-54				Affymetrix, Illumina [20825802] (imputed)	N
1385	chr10	104883649	104883650	rs7067663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q24.33		rs7067663-G	NR	8E-27		0.0239	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1385	chr10	104886532	104886533	rs12779263	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.33		rs12779263-G	0.706	4E-19		0.11	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
1385	chr10	104886532	104886533	rs12779263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q24.33	NR	rs12779263-T	0.295624	4E-48		0.028956	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1385	chr10	104886532	104886533	rs12779263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q24.33	NR	rs12779263-T	0.294802	4E-51		0.031698	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1385	chr10	104886620	104886621	rs117208459	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	10q24.33	NT5C2, CYP17A1	rs117208459-A	0.013816891	5E-11		1.5607	[1.09-2.03] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1385	chr10	104897900	104897901	rs732998	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	10q24.33	NT5C2	rs732998-C	0.18	8E-9		0.85	[0.81-0.9]	Affymetrix [NR]	N
1385	chr10	104901490	104901491	rs12220375	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	10q24.33	NR	rs12220375-T	0.92	3E-8		0.038177736	[0.025-0.052] unit decrease	NR [1977400] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	10q24.33	NT5C2	rs11191580-C	0.13	3E-8		0.86	[0.82-0.91]	Affymetrix [NR]	N
1385	chr10	104906210	104906211	rs11191580	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	10q24.33	NT5C2	rs11191580-?	NR	3E-20		0.10523462	NR unit increase	Affymetrix [464137]	N
1385	chr10	104906210	104906211	rs11191580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.33		rs11191580-?	NR	4E-57				NR [~ 8900000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q24.33		rs11191580-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.74	7E-15	(Japanese)	0.6749	[0.51-0.84] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.7386	9E-13	(Japanese)	0.4271	[0.31-0.54] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.7386	1E-10	(Japanese)	0.3933	[0.27-0.51] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.7386	2E-13	(Japanese)	0.1102	[0.081-0.139] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.7386	5E-6	(Japanese)	0.2517	[0.14-0.36] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Systolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	10q24.33	NT5C2	rs11191580-T	0.74	4E-15		0.97	[0.73-1.21] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q24.33	NR	rs11191580-T	0.909791403908989	2E-11		0.031222157	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	10q24.33	NT5C2	rs11191580-C	0.27	4E-8		0.0295	[0.019-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q24.33	NT5C2	rs11191580-?	0.911	1E-8	(Modelling analysis)			NR [1252901] (imputed)	N
1385	chr10	104906210	104906211	rs11191580	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	10q24.33	NT5C2, other genes, CNNM2	rs11191580-?	NR	2E-9		1.23	[NR]	Affymetrix [745006]	N
1385	chr10	104906210	104906211	rs11191580	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	10q24.33	NT5C2	rs11191580-T	0.91	3E-8		1.2	[1.13-1.26]	Affymetrix, Illumina [1252901] (imputed)	N
1385	chr10	104908360	104908361	rs61288291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	10q24.33	NT5C2	rs61288291-C	0.373469	8E-31		0.026963774	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1385	chr10	104910958	104910959	rs79680647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q24.33		rs79680647-A	NR	9E-47		0.0408	[0.035-0.046] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1385	chr10	104910958	104910959	rs79680647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q24.33		rs79680647-A	0.251673764	1E-17		0.080672644	[0.062-0.099] unit decrease	Illumina [13134967] (imputed)	N
1385	chr10	104913652	104913653	rs11191582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	10q24.33		rs11191582-A	0.245567	7E-12		0.0272922	[0.019-0.035] unit decrease	Illumina [13477767] (imputed)	N
1385	chr10	104913652	104913653	rs11191582	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	10q24.33	NR	rs11191582-A	0.0885	3E-17		0.16499773	[0.13-0.2] unit decrease	NR [NR]	N
1385	chr10	104913652	104913653	rs11191582	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	10q24.33	NR	rs11191582-A	0.0885	9E-13		0.13741739	[0.1-0.175] unit decrease	NR [NR]	N
1385	chr10	104913652	104913653	rs11191582	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	10q24.33	ACTR1A, ARL3, AS3MT, BORCS7, BORCS7-ASMT, CNNM2, CYP17A1, INA, MFSD13A, MIR1307, NT5C2, PCGF6, PDCD11, RPEL1, SFXN2, SUFU, TAF5, TRIM8, USMG5, WBP1L	rs11191582-?		4E-14		1.1363636	[1.1-1.18]	Affymetrix, Illumina [NR]	N
1385	chr10	104913939	104913940	rs74233809	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	10q24.33	NT5C2	rs74233809-C	0.08	2E-9		0.0387	[0.026-0.051] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1385	chr10	104921663	104921664	rs117375960	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram and depression	2,963 European ancestry responder cases, 191,936 European ancestry healthy controls	NA	10q24.33	NT5C2	rs117375960-?		2E-6		142.85713	[2.9-?]	Illumina [~ 12000000] (imputed)	N
1385	chr10	104928913	104928914	rs12416331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q24.33		rs12416331-A	NR	4E-25		0.0832	[0.068-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1385	chr10	104928913	104928914	rs12416331	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q24.33	NT5C2	rs12416331-A	0.0909	6E-42		0.5987	[0.51-0.69] mmHg decrease	Affymetrix [NR] (imputed)	N
1385	chr10	104928913	104928914	rs12416331	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NR	rs12416331-A	0.2543	7E-15	(East Asian)	0.4052	[0.3-0.51] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104928913	104928914	rs12416331	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	10q24.33	AS3MT, C10orf32, C10orf32-ASMT, CNNM2, CYP17A1, INA, NT5C2, PCGF6, RPEL1, WBP1L	rs12416331-?	NR	7E-18		1.157	[1.12-1.19]	Illumina [8000000] (imputed)	N
1385	chr10	104931583	104931584	rs12219304	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.33	NR	rs12219304-C	0.248	1E-12	(East Asian)	0.0968	[0.07-0.123] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	10q24.33		rs11191593-C	NR	3E-13		0.0841	[0.062-0.107] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.74	3E-15	(Japanese)	0.703	[0.53-0.88] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.7392	4E-13	(Japanese)	0.446	[0.33-0.57] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.7392	8E-11	(Japanese)	0.4086	[0.29-0.53] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.7392	6E-13	(Japanese)	0.1142	[0.083-0.145] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.7392	4E-6	(Japanese)	0.2605	[0.15-0.37] unit increase	Illumina [6200000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	10q24.33	CYP17A1, NT5C2	rs11191593-T	0.7402	2E-6	(East Asians)	0.5976	[0.35-0.85] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	10q24.33	NT5C2	rs11191593-T	0.74	1E-6	(MAP)	0.54	[0.32-0.76] mm of mercury increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1385	chr10	104939214	104939215	rs11191593	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q24.33	NT5C2, CYP17A1	rs11191593-T	0.94	1E-15	(Mean Arterial Pressure)	0.66	[0.50-0.82] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1385	chr10	104939231	104939232	rs12240508	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q24.33	NR	rs12240508-A	0.15	2E-11		0.0171	[0.012-0.022] unit increase	NR [NR]	N
1385	chr10	104939231	104939232	rs12240508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.33	NT5C2	rs12240508-A	0.150352	6E-10		0.023231259	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1385	chr10	104943047	104943048	rs11191595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q24.33	NR	rs11191595-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1385	chr10	104943047	104943048	rs11191595	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	10q24.33	NT5C2	rs11191595-A	0.936734	1E-9		1.07	[1.05-1.10]	Affymetrix [14661600] (imputed)	N
1385	chr10	104943047	104943048	rs11191595	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	10q24.33	NT5C2	rs11191595-A	0.936734	2E-9		1.07	[1.05-1.10]	Affymetrix [14661600] (imputed)	N
1385	chr10	104943992	104943993	rs1163238	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q24.33	NR	rs1163238-A	0.39	8E-9		0.019	[0.013-0.025] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1385	chr10	104943992	104943993	rs1163238	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q24.33	NT5C2	rs1163238-G	0.6114999999999999	3E-8		1.0239831		Affymetrix [11880941] (imputed)	N
1385	chr10	104945750	104945751	rs7077291	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	10q24.33	NR	rs7077291-T	0.39181	8E-13		7.166	unit decrease	NR [10847151] (imputed)	N
1385	chr10	104945750	104945751	rs7077291	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	10q24.33	NR	rs7077291-T	0.39181	3E-13		7.31	z score decrease	NR [10847151] (imputed)	N
1385	chr10	104945822	104945823	rs77420391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q24.33		rs77420391-A	NR	5E-34		0.0356	[0.03-0.041] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1385	chr10	104945822	104945823	rs77420391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q24.33		rs77420391-A	NR	3E-18		0.0263	[0.02-0.032] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1385	chr10	104945822	104945823	rs77420391	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NR	rs77420391-A	0.2415	2E-22	(East Asian)	0.7592	[0.61-0.91] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104945822	104945823	rs77420391	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.33	NR	rs77420391-A	NR	2E-12		0.03131	[0.023-0.04] unit decrease	Affymetrix [10847151] (imputed)	N
1385	chr10	104946670	104946671	rs559546873	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q24.33	NT5C2	rs559546873-C	0.2631	3E-10		0.02762326	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1385	chr10	104952498	104952499	rs79780963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	10q24.33		rs79780963-T	NR	2E-8		0.1593	[0.1-0.22] unit decrease	Affymetrix, Illumina [25841674] (imputed)	N
1385	chr10	104952498	104952499	rs79780963	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	10q24.33	NT5C2, MARCKSL1P1	rs79780963-T	0.0784	7E-9		0.2254	[0.15-0.3] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
1385	chr10	104952498	104952499	rs79780963	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	10q24.33	NT5C2, MARCKSL1P1	rs79780963-T	0.254	2E-14		0.188	[0.14-0.24] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
1385	chr10	104952498	104952499	rs79780963	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	10q24.33	NR	rs79780963-?		3E-14				NR [8377093]	N
1385	chr10	104952498	104952499	rs79780963	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	10q24.33	NR	rs79780963-?		3E-14				NR [8377093]	N
1385	chr10	104958243	104958244	rs10883846	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q24.33	NT5C2, CYP17A1	rs10883846-C	0.614715	1E-10		0.016841	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	10q24.33		rs112913898-A	0.255801	2E-19		0.0348413	[0.027-0.042] unit decrease	Illumina [13477770] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q24.33		rs112913898-A	NR	4E-39		0.0366	[0.031-0.042] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	10q24.33		rs112913898-A	0.255781	1E-19		0.0355168	[0.028-0.043] unit decrease	Illumina [13477769] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs112913898-A	0.25	1E-16	(Japanese)	0.7843	[0.6-0.97] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	10q24.33	NT5C2	rs112913898-A	0.2506	2E-15	(Japanese)	0.5157	[0.39-0.64] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs112913898-A	0.2506	3E-11	(Japanese)	0.4429	[0.31-0.57] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q24.33	NT5C2	rs112913898-A	0.2506	9E-13	(Japanese)	0.1202	[0.087-0.153] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NT5C2	rs112913898-A	0.2506	7E-6	(Japanese)	0.2711	[0.15-0.39] unit decrease	Illumina [6200000] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	10q24.33	NT5C2, RPEL1	rs112913898-?	NR	3E-16		0.03919	[0.03-0.049] unit decrease	Illumina [6108953] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	10q24.33	NT5C2, RPEL1	rs112913898-?	NR	5E-17		0.04013	[0.031-0.049] unit decrease	Illumina [6108953] (imputed)	N
1385	chr10	104958899	104958900	rs112913898	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	10q24.33	NT5C2, RPEL1	rs112913898-?	NR	6E-10		0.02993	[0.02-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1385	chr10	104959187	104959188	rs11191607	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q24.33	NR	rs11191607-T	0.0816083900729338	2E-8		0.017133368	[0.011-0.023] unit decrease	NR [NR]	N
1385	chr10	104959187	104959188	rs11191607	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q24.33	NR	rs11191607-T	0.0816083900729338	3E-8		0.010920961	[0.0071-0.0148] unit decrease	NR [NR]	N
1385	chr10	104959486	104959487	rs12774577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.33		rs12774577-T	0.8545	9E-13		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1385	chr10	104959486	104959487	rs12774577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.33	Intergenic	rs12774577-T	0.8545	4E-12	(MTAG)	0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1385	chr10	104960463	104960464	rs113278154	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	10q24.33	NT5C2	rs113278154-T	0.27	4E-8		0.9	[0.86-0.92]	Affymetrix [7975321]	N
1385	chr10	104960463	104960464	rs113278154	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10q24.33	VRK2, FANCL	rs113278154-?		6E-9				NR [7428630] (imputed)	N
1385	chr10	104973316	104973317	rs190474885	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.33	NR	rs190474885-C	NR	1E-6		1.2048193	[NR]	Illumina [7158791] (imputed)	N
1385	chr10	104977602	104977603	rs11191614	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q24.33	NT5C2	rs11191614-C	0.862195	2E-9		0.0160579	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
1385	chr10	104977602	104977603	rs11191614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q24.33		rs11191614-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1385	chr10	104977602	104977603	rs11191614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.33		rs11191614-T	0.1396	8E-12	(conditional-joint)	0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1386	chr10	104995494	104995495	rs6584542	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			RPEL1	rs6584542-A	0.3058	1E-9		30.5708	[20.77-40.38] unit increase	Affymetrix [8165723] (imputed)	N
1386	chr10	104995494	104995495	rs6584542	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs6584542-?	NR	3E-14	(total brain volume)			NR [9227495] (imputed)	N
1386	chr10	104996308	104996309	rs10748841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.33		rs10748841-A	0.6725	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1386	chr10	105000368	105000369	rs7894240	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	10q24.33	CALHM1, CALHM2, CALHM3, CNNM2, INA, MIR1307, NT5C2, PCGF6, PDCD11, RPEL1, TAF5, USMG5	rs7894240-T	0.45	2E-6		0.24	[0.14-0.34] unit increase	Illumina [at least 4710000] (imputed)	N
1386	chr10	105003720	105003721	rs4917385	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	10q24.33	USMG5, BC040734	rs4917385-?	0.648	1E-8		1.3888888	[1.25-1.54]	Illumina [580483] (imputed)	N
1386	chr10	105005500	105005501	rs71471272	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q24.33	RPEL1	rs71471272-A	0.0746	5E-8		0.022515325	[0.014-0.031] unit increase	Affymetrix [11514654] (imputed)	N
1386	chr10	105012993	105012994	rs1628768	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	10q24.33	RPEL1	rs1628768-?	NR	2E-9	(EA)	0.9972	[0.67-1.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1386	chr10	105012993	105012994	rs1628768	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q24.33	NR	rs1628768-T	0.7667	1E-16	(total)	773.2318	[590.59-955.87] unit decrease	Affymetrix, Illumina [NR]	N
1386	chr10	105012993	105012994	rs1628768	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q24.33	RPEL1	rs1628768-T	0.7651	1E-9		0.015497518	[0.01-0.021] unit increase	Affymetrix [11514654] (imputed)	N
1386	chr10	105030156	105030157	rs76957677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.33		rs76957677-T	0.0192	5E-8		0.0297	[0.019-0.04] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1386	chr10	105033014	105033015	rs1712517	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	10q24.33	INA	rs1712517-T	0.48	9E-6		1.13	[1.07-1.17]	Illumina [1246388] (imputed)	N
1386	chr10	105039240	105039241	rs1163085	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q24.33	NR	rs1163085-G	NR	4E-8		0.01352	[0.0087-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
1386	chr10	105043288	105043289	rs1163087	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	10q24.33	INA	rs1163087-A	0.401	5E-8		0.29	[0.19-0.39] unit increase	Affymetrix [NR] (imputed)	N
1386	chr10	105048216	105048217	rs34440112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	10q24.33	NR	rs34440112-C	NR	6E-10		0.0459	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1386	chr10	105059895	105059896	rs11191648	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	10q24.33		rs11191648-?	NR	5E-9		0.0193	NR unit decrease	NR [4425810] (imputed)	N
1386	chr10	105062209	105062209	rs549362382	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q24.33	NR	rs549362382-?	NR	2E-10	(total brain volume)			NR [9227495] (imputed)	N
1387	chr10	105126027	105126028	rs12776544	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q24.33		rs12776544-C	0.944	4E-12		0.018	[0.012-0.024] unit decrease	NR [NR] (imputed)	N
1387	chr10	105148649	105148650	rs57707166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q24.33		rs57707166-C	0.092702	1E-13		0.0255876	[0.019-0.032] unit decrease	Illumina [13479295] (imputed)	N
1387	chr10	105148649	105148650	rs57707166	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q24.33	TAF5	rs57707166-?	NR	8E-18		0.04210256	[0.033-0.052] unit decrease	Illumina [27896057] (imputed)	N
1387	chr10	105149940	105149941	rs188843168	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	10q24.33	USMG5	rs188843168-?		4E-7		449.83	[5.402-Inf]	Illumina [~ 12000000] (imputed)	N
1387	chr10	105170648	105170649	rs11191683	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	10q24.33	NR	rs11191683-T	NR	1E-9		6.046	NR z score increase	NR [9186920] (imputed)	N
1387	chr10	105176178	105176179	rs7894407	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	PDCD11	rs7894407-T	0.65	3E-8				Affymetrix, Illumina [14227402] (imputed)	N
1387	chr10	105176178	105176179	rs7894407	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	PDCD11	rs7894407-T	0.65	2E-9	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1387	chr10	105187745	105187746	rs11191686	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q24.33	PDCD11	rs11191686-A	0.3635	1E-10		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1387	chr10	105191396	105191396	rs35327241	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q24.33	PDCD11	rs35327241-T	0.4198	2E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1387	chr10	105202317	105202318	rs1536225	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q24.33	PDCD11	rs1536225-T	0.6328	1E-13		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1387	chr10	105218253	105218254	rs4918016	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q24.33	NR	rs4918016-T	0.3316	3E-9	(total)	495.48355	[331.41-659.56] unit decrease	Affymetrix, Illumina [NR]	N
1387	chr10	105229719	105229720	rs3014195	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.33	Intergenic	rs3014195-T	0.2422	2E-8	(MTAG)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr10	105233252	105233253	rs116250606	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	10q24.33	NR	rs116250606-T	0.028	1E-7		3.242	[2.052-5.121]	Illumina [274400]	N
1387	chr10	105241607	105241608	rs375812923	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q24.33		rs375812923-?	NR	3E-6		0.634405	[0.37-0.9] unit increase	Illumina [9875426] (imputed)	N
1388	chr10	105257785	105257786	rs7071247	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q24.33	NEURL	rs7071247-T	0.119	2E-7	(epinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1388	chr10	105275749	105275750	rs11813481	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	10q24.33	CALHM3, NEURL1	rs11813481-?	NR	4E-6		0.0451	NR unit increase	Affymetrix, Illumina [7062950] (imputed)	N
1388	chr10	105277473	105277474	rs55693294	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q24.33	NEURL1	rs55693294-T	0.061	4E-9		1.09	[1.06-1.12]	Illumina [34740186] (imputed)	N
1388	chr10	105284587	105284588	rs3014201	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q24.33	NR	rs3014201-T	0.596439	2E-10		0.0126799	[0.0088-0.0166] unit increase	NR [NR]	N
1388	chr10	105297769	105297770	rs7069733	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	10q24.33	NR	rs7069733-C		7E-6	(Modelling analysis)	1.08	[1.04-1.12]	NR [1252901] (imputed)	N
1388	chr10	105299610	105299611	rs6584555	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	10q24.33	NEURL1	rs6584555-C	0.126	3E-7		1.58	[1.33-1.88]	Affymetrix [642422]	N
1388	chr10	105305000	105305001	rs72848971	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	10q24.33		rs72848971-G	0.755196	8E-9		0.0596057	[0.039-0.08] increase	Affymetrix [11014269] (imputed)	N
1388	chr10	105305000	105305001	rs72848971	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q24.33	NEURL1	rs72848971-G	0.7597	5E-9		0.0965	[0.064-0.129] unit increase	Affymetrix [~ 11900000] (imputed)	N
1388	chr10	105307723	105307724	rs74154533	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	10q24.33	NEURL1	rs74154533-G	0.18	6E-7		1.12	[1.07-1.17]	NR [~ 8000000] (imputed)	N
1388	chr10	105319040	105319041	rs11597473	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q24.33	NR	rs11597473-G	NR	1E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1388	chr10	105319408	105319409	rs72848980	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	NEURL	rs72848980-G	0.8	6E-9	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1388	chr10	105319408	105319409	rs72848980	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	NEURL	rs72848980-G	0.8	3E-9				Affymetrix, Illumina [14227402] (imputed)	N
1388	chr10	105321880	105321881	rs60848348	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Incident atrial fibrillation	7,323 European ancestry cases, 102,776 European ancestry controls.		10q24.33	NEURL1	rs60848348-T	0.20	2E-8		1.13	1.09-1.18	Affymetrix, Illumina [at least 3187278] (imputed)	N
1388	chr10	105324169	105324170	rs7084783	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	10q24.33	NR	rs7084783-G	0.49	2E-6		1.69	unit decrease	Illumina [8591557] (imputed)	N
1388	chr10	105330946	105330947	rs12253987	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	10q24.33		rs12253987-A	NR	1E-29		1.255787	[1.20714794714423-1.30638583786572]	Illumina [8919992] (imputed)	N
1388	chr10	105334706	105334707	rs185158502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	10q24.33		rs185158502-G	NR	6E-12		0.3359	[0.24-0.43] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1388	chr10	105334706	105334707	rs185158502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	10q24.33		rs185158502-G	0.006881791	6E-12		0.33592415	[0.24-0.43] unit increase	Illumina [13429980] (imputed)	N
1388	chr10	105334706	105334707	rs185158502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q24.33		rs185158502-G	0.005713655	5E-50		2.7338204	[2.37-3.09] unit increase	Illumina [13427194] (imputed)	N
1388	chr10	105334706	105334707	rs185158502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	10q24.33		rs185158502-G	NR	5E-50		2.7338	[2.37-3.09] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1388	chr10	105335360	105335361	rs373205748	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	10q24.33		rs373205748-T	0.005810038	1E-79		4.4763417	[3.831888534-5.229180437]	Illumina [8919992] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q24.33	NEURL1	rs11598047-G	0.162	9E-66		1.17	[1.15-1.19]	Illumina [34740186] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q24.33	NEURL	rs11598047-G	0.16	5E-58		1.17	[1.14-1.19]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q24.33	NEURL	rs11598047-G	0.16	1E-47	(EA)	1.16	[1.13-1.18]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		10q24.33	NEURL1	rs11598047-G	0.17	4E-16		1.24	1.18-1.31	Affymetrix, Illumina [at least 3187278] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	10q24.33	NEURL1	rs11598047-G	0.17	3E-21		1.18	[1.14-1.22]	Affymetrix, Illumina [11795432] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	10q24.33	NEURL1	rs11598047-G	0.16	2E-22		1.18	[1.14-1.31]	Affymetrix, Illumina [11795432] (imputed)	N
1388	chr10	105342671	105342672	rs11598047	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	10q24.33	NEURL1	rs11598047-G	0.16	2E-6		1.17	[1.14-1.31]	Affymetrix, Illumina [11795432] (imputed)	N
1388	chr10	105356836	105356837	rs7921536	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10q24.33	SH3PXD2A, NEURL, OBFC1	rs7921536-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
1388	chr10	105363288	105363289	rs3740471	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs3740471-T	0.7661	1E-8		0.0954	[0.063-0.128] unit increase	Affymetrix [~ 11900000] (imputed)	N
1388	chr10	105379128	105379129	rs75577686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.33		rs75577686-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1389	chr10	105390020	105390021	rs10883890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q24.33		rs10883890-C	NR	4E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1389	chr10	105390342	105390343	rs12248541	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10q24.33	SH3PXD2A, NEURL, OBFC1	rs12248541-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1389	chr10	105395892	105395893	rs6584565	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	10q24.33	NR	rs6584565-A	NR	6E-6		3.65	[NR]	Illumina [NR] (imputed)	N
1389	chr10	105410364	105410365	rs3824776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q24.33		rs3824776-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1389	chr10	105413039	105413040	rs4918037	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	10q24.33	SH3PXD2A	rs4918037-G	0.897	6E-11				NR [509413]	N
1389	chr10	105413642	105413643	rs10883893	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs10883893-?		1E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105428151	105428152	rs3781339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q24.33		rs3781339-T	0.1962	8E-9		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1389	chr10	105428151	105428152	rs3781339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q24.33	Intergenic	rs3781339-T	0.1962	5E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1389	chr10	105438111	105438112	rs12357919	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	SH3PXD2A	rs12357919-T	0.81	2E-8	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1389	chr10	105438111	105438112	rs12357919	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	SH3PXD2A	rs12357919-T	0.81	2E-8				Affymetrix, Illumina [14227402] (imputed)	N
1389	chr10	105444123	105444123	rs143312364	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs143312364-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105444123	105444123	rs143312364	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs143312364-?		1E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1389	chr10	105444123	105444123	rs143312364	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs143312364-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105446590	105446591	rs750156147	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10q24.33	SH3PXD2A	rs750156147-C	0.9981	3E-6		1.1412	[0.67-1.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1389	chr10	105447780	105447781	rs7079298	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs7079298-?		2E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1389	chr10	105447780	105447781	rs7079298	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs7079298-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105454037	105454037	rs11394128	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11394128-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1389	chr10	105454037	105454037	rs11394128	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11394128-?		2E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105454037	105454037	rs11394128	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11394128-?		1E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1389	chr10	105454037	105454037	rs11394128	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11394128-?		1E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1389	chr10	105454880	105454881	rs3758575	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q24.33	SH3PXD2A	rs3758575-A	0.4904	2E-11		0.0388	[0.027-0.05] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1389	chr10	105458421	105458421	rs56365914	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs56365914-?		2E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1389	chr10	105459115	105459116	rs4630220	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q24.33	SH3PXD2A	rs4630220-G	0.7122	3E-13				Affymetrix, Illumina [9900000] (imputed)	N
1389	chr10	105459115	105459116	rs4630220	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q24.33	SH3PXD2A	rs4630220-G	NR	2E-13		0.0483	[0.035-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1389	chr10	105459115	105459116	rs4630220	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs4630220-G	NR	7E-13		0.0461	[0.034-0.059] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1389	chr10	105459115	105459116	rs4630220	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs4630220-G	0.712	1E-13		0.048	[0.035-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1389	chr10	105459115	105459116	rs4630220	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	10q24.33	SH3PXD2A	rs4630220-A		1E-14		7.236	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
1389	chr10	105459833	105459834	rs11191772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	10q24.33		rs11191772-C	0.548202298	9E-10		0.06770013	[0.046-0.089] unit decrease	Illumina [13429439] (imputed)	N
1389	chr10	105459833	105459834	rs11191772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	10q24.33		rs11191772-C	NR	3E-9		0.0511	[0.034-0.068] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
1389	chr10	105464081	105464082	rs11191775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.33	NR	rs11191775-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1389	chr10	105472829	105472830	rs10509768	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	10q24.33	SH3PXD2A	rs10509768-G	NR	9E-16		1.2	[1.14-1.25]	NR [2286360] (imputed)	N
1389	chr10	105477162	105477163	rs2047036	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	10q24.33	SH3PXD2A	rs2047036-G	0.257	2E-11		1.078	[1.055-1.102]	Illumina [5018049] (imputed)	N
1389	chr10	105480386	105480387	rs35176054	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q24.33	NEURL1	rs35176054-A	0.130	8E-41		1.15	[1.12-1.17]	Illumina [34740186] (imputed)	N
1389	chr10	105480386	105480387	rs35176054	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q24.33	SH3PXD2A	rs35176054-A	0.13	1E-40	(EA)	1.16		Affymetrix, Illumina [up to 12149979] (imputed)	N
1389	chr10	105480386	105480387	rs35176054	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	10q24.33	SH3PXD2A	rs35176054-A	0.12699	7E-7		1.1748965	[1.10854284427068-1.24522171699374]	Illumina [8952551] (imputed)	N
1389	chr10	105480386	105480387	rs35176054	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	10q24.33	SH3PXD2A	rs35176054-A	0.13	2E-11		1.14	[1.10-1.18]	Affymetrix, Illumina [11795432] (imputed)	N
1389	chr10	105480386	105480387	rs35176054	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	10q24.33	SH3PXD2A	rs35176054-A	0.13	6E-9		1.24	[1.15-1.33]	Affymetrix, Illumina [11795432] (imputed)	N
1389	chr10	105481741	105481742	rs7083463	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q24.33	NR	rs7083463-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1389	chr10	105492548	105492549	rs11191786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.33		rs11191786-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	9E-16	(-106 ms)	0.0443976	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	8E-10	(-122 ms)	0.0355415	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	7E-13	(-94 ms)	0.0407412	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	7E-10	(-86 ms)	0.0353063	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	6E-14	(-112 ms)	0.041972	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	6E-14	(-100 ms)	0.0417523	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	5E-9	(-82 ms)	0.0334217	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	5E-15	(-110 ms)	0.0434164	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	5E-13	(-114 ms)	0.0407466	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	4E-12	(-118 ms)	0.0397615	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	4E-10	(-84 ms)	0.0356079	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	3E-13	(-98 ms)	0.0412623	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	3E-12	(-92 ms)	0.0398004	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-15	(-104 ms)	0.0439811	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-13	(-96 ms)	0.0412161	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-12	(-116 ms)	0.0400587	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-11	(-90 ms)	0.0380221	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-11	(-120 ms)	0.0386987	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	2E-10	(-88 ms)	0.0363945	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	SH3PXD2A	rs12257568-C	0.615848	1E-15	(-108 ms)	0.0443849	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1390	chr10	105522874	105522875	rs12257568	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	10q24.33	SH3PXD2A, OBFC1	rs12257568-T	0.41	6E-18		1.0	[0.76-1.24] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1390	chr10	105524080	105524081	rs10883908	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q24.33	SH3PXD2A, OBFC1	rs10883908-T	0.4096	5E-52		0.9787	[0.85-1.11] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1390	chr10	105524080	105524081	rs10883908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q24.33		rs10883908-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1390	chr10	105532164	105532165	rs11191801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q24.33	NR	rs11191801-A	0.707464	6E-12		0.00919391	[0.0064-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1390	chr10	105532164	105532165	rs11191801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	10q24.33	NR	rs11191801-A	0.708091	9E-16		0.0234295	[0.017-0.029] unit increase	Affymetrix [16580851] (imputed)	N
1390	chr10	105576611	105576612	rs189007515	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q24.33	NR	rs189007515-?	NR	5E-10				Illumina [7760689] (imputed)	N
1390	chr10	105576611	105576612	rs189007515	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q24.33	NR	rs189007515-?	NR	2E-8				Illumina [7760689] (imputed)	N
1390	chr10	105576611	105576612	rs189007515	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q24.33	NR	rs189007515-?	NR	2E-10				Illumina [7760689] (imputed)	N
1390	chr10	105576611	105576612	rs189007515	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q24.33	NR	rs189007515-?	NR	1E-9				Illumina [7760689] (imputed)	N
1390	chr10	105591778	105591779	rs11191818	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with cleft palate or cleft palate (pleiotropy)	875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	10q24.33		rs11191818-G	0.31	9E-7				Illumina [6761961] (imputed)	N
1390	chr10	105593427	105593428	rs139620151	33941849	Chang X	2021-05-03	Commun Biol	Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population.	Telomere length	20,177 Chinese ancestry individuals	5,356 Chinese ancestry individuals	10q24.33	STN1, SH3PXD2A	rs139620151-A	0.006	1E-8		0.394	[0.29-0.5] NR increase	Illumina [up to 4756872] (imputed)	N
1390	chr10	105596640	105596641	rs4918058	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Ischemic stroke	17,671 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	10q24.33		rs4918058-C	0.652279482	1E-9		0.9283776	[0.906317839-0.950974293]	Illumina [8919992] (imputed)	N
1390	chr10	105599769	105599770	rs11191822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q24.33	SH3PXD2A, OBFC1	rs11191822-?		1E-8				NR [7428630] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	0.652	8E-11				Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	0.64	5E-11				Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	NR	3E-12		0.0428	[0.031-0.055] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	0.64	2E-12		0.042	[0.03-0.054] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	NR	2E-12		0.0418	[0.03-0.053] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10q24.33	SH3PXD2A	rs10786772-G	0.6458	2E-12		0.0425	[0.031-0.054] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1390	chr10	105610325	105610326	rs10786772	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q24.33	NR	rs10786772-?	NR	2E-8	(grey matter)			NR [9227495] (imputed)	N
1390	chr10	105613177	105613178	rs7909791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q24.33		rs7909791-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1390	chr10	105613177	105613178	rs7909791	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	SH3PXD2A	rs7909791-A	0.34	3E-9				Affymetrix, Illumina [14227402] (imputed)	N
1390	chr10	105613177	105613178	rs7909791	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	10q24.33	SH3PXD2A	rs7909791-A	0.34	2E-8	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1390	chr10	105615073	105615074	rs10883928	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q24.33		rs10883928-T	0.31	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
1390	chr10	105616481	105616482	rs2295786	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	10q24.33	SH3PXD2A	rs2295786-?	NR	2E-10				NR [~ 8000000] (imputed)	N
1390	chr10	105616481	105616482	rs2295786	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	10q24.33	SH3PXD2A	rs2295786-?	NR	1E-7				NR [~ 8000000] (imputed)	N
1390	chr10	105616481	105616482	rs2295786	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	10q24.33	SH3PXD2A	rs2295786-?	NR	4E-6				NR [~ 8000000] (imputed)	N
1390	chr10	105616481	105616482	rs2295786	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	10q24.33	SH3PXD2A	rs2295786-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1390	chr10	105616712	105616713	rs72819454	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	10q24.33	NR	rs72819454-C		8E-6		0.3325	[0.19-0.48] SD units decrease	NR [10700000] (imputed)	N
1390	chr10	105619677	105619678	rs11191833	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q24.33		rs11191833-A	0.31	2E-12		7.05	z score increase	Affymetrix [9061022] (imputed)	N
1390	chr10	105619677	105619678	rs11191833	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q24.33	NR	rs11191833-A	0.3602	6E-14				NR [9056863] (imputed)	N
1390	chr10	105621858	105621859	rs11191835	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11191835-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1390	chr10	105621858	105621859	rs11191835	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11191835-?		7E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
1390	chr10	105621858	105621859	rs11191835	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs11191835-?		4E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1390	chr10	105623954	105623955	rs10883931	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs10883931-?		6E-10	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1390	chr10	105623954	105623955	rs10883931	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs10883931-?		1E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1390	chr10	105623954	105623955	rs10883931	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs10883931-?		4E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1390	chr10	105631125	105631126	rs4917404	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs4917404-?		9E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1390	chr10	105634894	105634895	rs11191839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q24.33		rs11191839-A	NR	4E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1390	chr10	105634894	105634895	rs11191839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q24.33		rs11191839-A	NR	2E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1390	chr10	105634894	105634895	rs11191839	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q24.33	NR	rs11191839-A	0.3594	2E-11				NR [9056863] (imputed)	N
1390	chr10	105639420	105639421	rs911547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q24.33	RP11-541N10.3	rs911547-A	0.860858	5E-22		0.031244159	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1390	chr10	105639420	105639421	rs911547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q24.33	RP11-541N10.3	rs911547-A	0.860889	9E-22		0.031226613	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1390	chr10	105639420	105639421	rs911547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q24.33	RP11-541N10.3	rs911547-A	0.86092	2E-21		0.0334977	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1390	chr10	105639420	105639421	rs911547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q24.33	RP11-541N10.3	rs911547-A	0.860908	1E-18		0.02821104	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1390	chr10	105639420	105639421	rs911547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.33	NR	rs911547-A	0.878445	4E-15				Affymetrix, Illumina [24588908] (imputed)	N
1390	chr10	105639420	105639421	rs911547	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs911547-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1390	chr10	105639513	105639514	rs10748858	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q24.33	OBFC1	rs10748858-G	0.409929348286573	3E-6		0.0025712	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1390	chr10	105639610	105639611	rs11191841	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	10q24.33	OBFC1	rs11191841-T	0.4914	4E-7		0.0128	[0.0079-0.0177] unit decrease	Affymetrix [19819130] (imputed)	N
1390	chr10	105639610	105639611	rs11191841	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q24.33	OBFC1	rs11191841-T	0.4914	8E-9		0.0136	[0.0089-0.0183] unit decrease	Affymetrix [19819130] (imputed)	N
1390	chr10	105639610	105639611	rs11191841	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	10q24.33	OBFC1	rs11191841-T	0.4914	6E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1390	chr10	105639610	105639611	rs11191841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q24.33		rs11191841-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1390	chr10	105643222	105643223	rs2067831	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q24.33	STN1	rs2067831-C	0.263444	1E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1391	chr10	105644322	105644323	rs10786774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q24.33		rs10786774-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1391	chr10	105647094	105647095	rs3814219	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Endothelial function traits	Up to 1,238 European ancestry individuals	NA	10q24.33	OBFC1	rs3814219-?	NR	9E-7	(BABF)			Affymetrix [70897]	N
1391	chr10	105650625	105650626	rs11191847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q24.33		rs11191847-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1391	chr10	105651656	105651657	rs10883944	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	10q24.33	OBFC1, SH3PXD2A	rs10883944-?	NR	2E-10				Affymetrix [up to 7325140] (imputed)	N
1391	chr10	105654468	105654469	rs997907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q24.33	NR	rs997907-C	0.503635	8E-11		0.00761834	[0.0054-0.0099] unit increase	Affymetrix [16582621] (imputed)	N
1391	chr10	105654468	105654469	rs997907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q24.33	NR	rs997907-C	0.503635	1E-9		0.00775363	[0.0054-0.0101] unit increase	Affymetrix [16582614] (imputed)	N
1391	chr10	105656341	105656342	rs11191852	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q24.33	NR	rs11191852-T	0.041	8E-6		0.68	[0.39-0.97] unit decrease	Illumina [9469131] (imputed)	N
1391	chr10	105656873	105656874	rs1570221	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	10q24.33	STN1	rs1570221-A	0.35	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1391	chr10	105657315	105657316	rs10786775	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	10q24.33		rs10786775-?	NR	3E-10		1.07447	[1.05-1.1]	NR [688737]	N
1391	chr10	105660445	105660449	rs139320396	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs139320396-?		2E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1391	chr10	105660985	105660986	rs2475214	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	10q24.33	OBFC1	rs2475214-T	0.6	2E-7		0.0299	[0.019-0.041] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1391	chr10	105661314	105661315	rs11598018	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	10q24.33	OBFC1	rs11598018-C	0.462	3E-8		1.14	1.09-1.20	Illumina [at least 6769856] (imputed)	N
1391	chr10	105661314	105661315	rs11598018	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	10q24.33	OBFC1	rs11598018-C	0.462	3E-7		1.1	1.06-1.14	Illumina [at least 6887412] (imputed)	N
1391	chr10	105662993	105662994	rs10786776	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q24.33	NR	rs10786776-?	NR	6E-6		1.17	[1.09-1.25]	Illumina [539000] (imputed)	N
1391	chr10	105664458	105664459	rs2475213	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q24.33	OBFC1	rs2475213-?		8E-7				Illumina [4322238] (imputed)	N
1391	chr10	105668842	105668843	rs2995264	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	10q24.33	OBFC1	rs2995264-G	0.1	2E-9		1.17	[NR]	Illumina [at least 560000] (imputed)	N
1391	chr10	105668842	105668843	rs2995264	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	10q24.33	OBFC1, SH3PXD2A	rs2995264-G	0.088	2E-9		0.16	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1391	chr10	105669276	105669278	rs146368412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q24.33	OBFC1	rs146368412-G	0.541717	4E-13		0.01620948	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr10	105669304	105669304	rs199727998	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs199727998-?		3E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1391	chr10	105669304	105669304	rs199727998	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs199727998-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1391	chr10	105669621	105669622	rs12765878	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q24.33	OBFC1	rs12765878-T	0.5136	3E-9		0.0327	[0.022-0.043] unit decrease	NR [8041861] (imputed)	N
1391	chr10	105671526	105671527	rs1265165	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	10q24.33	OBFC1	rs1265165-T	0.100447	4E-23				Affymetrix, Illumina [NR] (imputed)	N
1391	chr10	105671682	105671683	rs79342925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	10q24.33		rs79342925-T	NR	6E-56		0.3372	[0.3-0.38] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1391	chr10	105671682	105671683	rs79342925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	10q24.33		rs79342925-T	0.075761421	2E-35		0.32135242	[0.27-0.37] unit increase	Illumina [13401454] (imputed)	N
1391	chr10	105671682	105671683	rs79342925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	10q24.33		rs79342925-T	0.079131	4E-13		0.0424071	[0.031-0.054] unit increase	Illumina [13479135] (imputed)	N
1391	chr10	105671682	105671683	rs79342925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q24.33		rs79342925-T	NR	4E-13		0.0451	[0.033-0.057] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1391	chr10	105671682	105671683	rs79342925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	10q24.33		rs79342925-T	0.078782	2E-13		0.0494504	[0.036-0.063] unit decrease	Illumina [13476266] (imputed)	N
1391	chr10	105672841	105672842	rs11191865	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	10q24.33	OBFC1	rs11191865-A	0.491	9E-6		1.16	[1.09-1.24]	Affymetrix, Illumina [10790934] (imputed)	N
1391	chr10	105672841	105672842	rs11191865	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	10q24.33	OBFC1	rs11191865-A	0.49	2E-8		1.25	[1.15-1.35]	Illumina [439828]	N
1391	chr10	105674094	105674095	rs2475217	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	10q24.33	OBFC1	rs2475217-C	0.78	3E-6		0.019	[0.011-0.027] unit increase	Illumina [7411206] (imputed)	N
1391	chr10	105675945	105675946	rs9419958	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	10q24.33	STN1, OBFC1	rs9419958-C	0.86	5E-19		0.064	[0.05-0.078] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1391	chr10	105675945	105675946	rs9419958	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	10q24.33	OBFC1, SLK	rs9419958-T	0.13	1E-16		1.1	[1.08-1.13]	Affymetrix, Illumina [8662096] (imputed)	N
1391	chr10	105675945	105675946	rs9419958	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	10q24.33	OBFC1	rs9419958-T	NR	4E-7		1.06	[1.04-1.09]	Affymetrix [7600000] (imputed)	N
1391	chr10	105675945	105675946	rs9419958	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	10q24.33	OBFC1	rs9419958-T	0.155005	5E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1391	chr10	105675945	105675946	rs9419958	23001564	Mangino M	2012-09-25	Hum Mol Genet	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	10q24.33	OBFC1	rs9419958-T	0.1353	9E-11		0.0829	[0.057-0.108] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1391	chr10	105676464	105676465	rs9420907	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	10q24.33		rs9420907-?	NR	9E-9		1.22477	[1.16-1.29]	NR [674885]	N
1391	chr10	105676464	105676465	rs9420907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q24.33	OBFC1	rs9420907-A	0.868716	5E-10		0.020780228	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr10	105676464	105676465	rs9420907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q24.33	OBFC1	rs9420907-A	0.868727	5E-10		0.020746345	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr10	105676464	105676465	rs9420907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q24.33	NR	rs9420907-A	0.867211	8E-16		0.021784	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1391	chr10	105676464	105676465	rs9420907	23535734	Codd V	2013-04-01	Nat Genet	Identification of seven loci affecting mean telomere length and their association with disease.	Telomere length	37,684 European ancestry individuals	10,739 European ancestry individuals	10q24.33	OBFC1	rs9420907-A	0.865	7E-11		0.069	[0.049-0.089] unit decrease	Affymetrix, Illumina [2362330]	N
1391	chr10	105676550	105676550	rs767299843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q24.33	NR	rs767299843-CA	0.846876	1E-10		0.00722841	[0.0049-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
1391	chr10	105676550	105676550	rs767299843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q24.33	NR	rs767299843-CA	0.846876	1E-6		0.0062061	[0.0036-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
1391	chr10	105677896	105677897	rs4387287	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q24.33	OBFC1	rs4387287-C	0.828	4E-6	(EA, initial)	0.273	[0.16-0.39] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1391	chr10	105677896	105677897	rs4387287	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q24.33	OBFC1	rs4387287-A	0.1556	9E-10		0.361	mmHg increase	Illumina [242296]	N
1391	chr10	105677896	105677897	rs4387287	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q24.33	OBFC1	rs4387287-A	0.189	2E-8		5.583	z score increase	Illumina [242296]	N
1391	chr10	105677896	105677897	rs4387287	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q24.33	OBFC1	rs4387287-A	0.2029	4E-10		0.2243	[0.15-0.29] mmHg increase	Illumina [242296]	N
1391	chr10	105677896	105677897	rs4387287	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	10q24.33	OBFC1	rs4387287-A	NR	2E-11		0.1	[0.06-0.14] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1391	chr10	105677910	105677911	rs111447985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q24.33		rs111447985-A	NR	4E-13		0.0427	[0.031-0.054] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1391	chr10	105677910	105677911	rs111447985	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q24.33	STN1	rs111447985-A	0.073	2E-8		1.172	[1.12-1.23]	Illumina [11270530] (imputed)	N
1391	chr10	105677910	105677911	rs111447985	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NR	rs111447985-A	0.0877	2E-10	(East Asian)	0.4875	[0.34-0.64] unit increase	Illumina [6200000] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		3E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		1E-9	(Average across all tracts)			NR [8955960] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		1E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1391	chr10	105679340	105679341	rs2488002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	10q24.33	NR	rs2488002-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1391	chr10	105680585	105680586	rs12415148	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	10q24.33	STN1, OBFC1	rs12415148-?		4E-10		1.25	[1.16-1.33]	Illumina [7645193] (imputed)	N
1391	chr10	105680585	105680586	rs12415148	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	10q24.33	OBFC1	rs12415148-T	NR	3E-25	(East Asian)	0.204	NR unit decrease	Illumina [6407959] (imputed)	N
1391	chr10	105680631	105680632	rs7907606	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	10q24.33	OBFC1	rs7907606-G	0.19	2E-16		1.1235955	[1.09-1.15]	Affymetrix, Illumina [NR] (imputed)	N
1391	chr10	105680631	105680632	rs7907606	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	10q24.33	STN1	rs7907606-G	0.15533	3E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
1391	chr10	105680631	105680632	rs7907606	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	10q24.33	OBFC1	rs7907606-G	0.17	5E-9		1.1	[NR]	Illumina [at least 560000] (imputed)	N
1391	chr10	105682295	105682296	rs11813268	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	10q24.33		rs11813268-T	NR	6E-14		1.186521	NR	Affymetrix [7846216] (imputed)	N
1391	chr10	105682295	105682296	rs11813268	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q24.33		rs11813268-T	NR	2E-17		1.1185683	[1.09-1.15]	Affymetrix [7846216] (imputed)	N
1391	chr10	105682295	105682296	rs11813268	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	10q24.33	STN1	rs11813268-T	0.153417	7E-9		0.34593	[0.23-0.46] unit increase	Affymetrix [NR] (imputed)	N
1391	chr10	105682295	105682296	rs11813268	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	10q24.33	OBFC1	rs11813268-T	0.16	4E-8		1.12	1.07-1.17	Illumina [7437091] (imputed)	N
1391	chr10	105682343	105682344	rs201581170	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	10q24.33		rs201581170-T	0.845	3E-18		0.13	[0.1-0.16] % increase	Affymetrix [NR] (imputed)	N
1391	chr10	105687631	105687632	rs11591710	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	10q24.33	OBFC1, SLK	rs11591710-C	0.13604	6E-10		1.117842	[1.07-1.15]	NR [NR] (imputed)	N
1391	chr10	105687631	105687632	rs11591710	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	10q24.33	OBFC1, SLK	rs11591710-C	0.136758676	6E-11		1.1624825	[1.111169372-1.216165284]	Illumina [10439017] (imputed)	N
1391	chr10	105688049	105688050	rs17116149	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Uterine fibroids	5,954 Japanese ancestry cases, 95,010 Japanese ancestry controls	NA	10q24.33		rs17116149-A	0.075315114	1E-14		1.3587967	[1.25666984-1.46922335]	Illumina [8919992] (imputed)	N
1391	chr10	105688049	105688050	rs17116149	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	NR	rs17116149-A	0.0818	1E-10	(East Asian)	0.5473	[0.38-0.71] unit increase	Illumina [6200000] (imputed)	N
1391	chr10	105693643	105693644	rs4918072	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q24.33	intergenic	rs4918072-A	0.2713	1E-9		0.0386	[0.026-0.051] unit increase	Affymetrix [at least 7947838] (imputed)	N
1391	chr10	105693643	105693644	rs4918072	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q24.33	intergenic	rs4918072-A	0.272	3E-9		0.042	[0.028-0.056] unit increase	Affymetrix [7947838] (imputed)	N
1391	chr10	105694300	105694301	rs7902587	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	10q24.33	OBFC1	rs7902587-T	0.0962	3E-23		1.167815	NR	Affymetrix, Illumina [NR] (imputed)	N
1391	chr10	105694300	105694301	rs7902587	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	10q24.33	OBFC1, SLK	rs7902587-T	0.104013706	7E-6		1.0910419	[1.050261142-1.133406227]	Illumina [10439017] (imputed)	N
1391	chr10	105694300	105694301	rs7902587	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	10q24.33	NR	rs7902587-T	0.0975691	9E-7		1.3209459	[1.18528926703463-1.47212825755187]	Illumina [11595112] (imputed)	N
1391	chr10	105694300	105694301	rs7902587	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	10q24.33	NR	rs7902587-T	0.0975691	4E-8		1.2930167	[1.18179536270929-1.41470527615789]	Illumina [11595112] (imputed)	N
1391	chr10	105694300	105694301	rs7902587	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	10q24.33	OBFC1	rs7902587-T	0.109	5E-11		1.41	1.27-1.56	Illumina [7100000] (imputed)	N
1391	chr10	105694635	105694636	rs1977821	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	OBFC1	rs1977821-C	0.5614	4E-8	(188 ms)	0.0312559	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1391	chr10	105694635	105694636	rs1977821	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	OBFC1	rs1977821-C	0.5614	2E-8	(202 ms)	0.0325648	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1391	chr10	105694635	105694636	rs1977821	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	OBFC1	rs1977821-C	0.5614	2E-8	(200 ms)	0.0323842	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1391	chr10	105694635	105694636	rs1977821	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q24.33	OBFC1	rs1977821-C	0.5614	2E-8	(194 ms)	0.0316269	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1391	chr10	105698267	105698268	rs7081113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	10q24.33	NR	rs7081113-T	0.920697	2E-10		0.043386	[0.03-0.057] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1391	chr10	105707430	105707431	rs11191871	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	LOC102724351	rs11191871-A	0.9205	2E-7	(Japanese)	0.5062	[0.31-0.7] unit decrease	Illumina [6200000] (imputed)	N
1391	chr10	105707430	105707431	rs11191871	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q24.33	LOC102724351	rs11191871-A	0.9205	7E-8	(Japanese)	0.4756	[0.3-0.65] unit decrease	Illumina [6200000] (imputed)	N
1391	chr10	105707430	105707431	rs11191871	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	10q24.33	NR	rs11191871-?	NR	1E-8		0.04018	[0.026-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1391	chr10	105707430	105707431	rs11191871	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	10q24.33	OBFC1, SLK	rs11191871-?	NR	2E-8		0.03938	[0.026-0.053] unit increase	Illumina [6108953] (imputed)	N
1391	chr10	105714398	105714399	rs7913069	21460842	Cha PC	2011-04-03	Nat Genet	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	10q24.33	OBFC1, SLK	rs7913069-A	0.07	9E-14		1.47	[1.23-1.75]	Illumina [457044]	N
1391	chr10	105718385	105718386	rs7916093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	10q24.33	OBFC1, SLK	rs7916093-?	NR	5E-12		0.03673	[0.026-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1391	chr10	105718385	105718386	rs7916093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	10q24.33	OBFC1, SLK	rs7916093-?	NR	4E-11		0.03504	[0.025-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1391	chr10	105718429	105718429	rs11405687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10q24.33		rs11405687-CA	0.082718	4E-13		0.044427	[0.032-0.056] unit increase	Illumina [13478928] (imputed)	N
1391	chr10	105719240	105719241	rs4244255	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	10q24.33	OBFC1	rs4244255-?	NR	9E-6				Affymetrix, Illumina [3593389] (imputed)	N
1391	chr10	105719898	105719899	rs4630221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	10q24.33		rs4630221-A	0.079259	7E-10		0.0404767	[0.028-0.053] unit increase	Illumina [13477770] (imputed)	N
1391	chr10	105719898	105719899	rs4630221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	10q24.33	NR	rs4630221-G	0.920297	2E-10		0.04485	[0.031-0.059] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1391	chr10	105720103	105720104	rs115885880	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	10q24.33	NR	rs115885880-?	NR	2E-6	(AA)	10.0	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1391	chr10	105720711	105720712	rs7911816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	10q24.33	NR	rs7911816-C	0.766499	1E-13		0.038132	[0.028-0.048] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1391	chr10	105720732	105720733	rs61863693	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q24.33	NR	rs61863693-A	0.244752	4E-14				Affymetrix, Illumina [24332387] (imputed)	N
1391	chr10	105720732	105720733	rs61863693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q24.33		rs61863693-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1391	chr10	105720843	105720844	rs75228775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	10q24.33	NR	rs75228775-C	0.920511	1E-12		0.055944	[0.04-0.071] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1391	chr10	105728679	105728680	rs1310287037	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q24.33	NR	rs1310287037-C	0.01394	3E-10	(FGA)	0.3768	NR unit increase	Illumina [1671387] (imputed)	N
1392	chr10	105846073	105846074	rs1320448	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	10q25.1	COL17A1	rs1320448-?	NR	2E-8	(additive, recessive)			Affymetrix [361034]	N
1392	chr10	105884115	105884116	rs10883969	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	10q25.1	C10orf78	rs10883969-?	NR	3E-6	(EA)	2.97	[1.88-4.69]	Illumina [2485249] (imputed)	N
1392	chr10	105894943	105894945	rs775531481	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q25.1	CFAP43	rs775531481-T	0.001	3E-6		1.3158	[0.76-1.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1393	chr10	105933416	105933417	rs642743	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	10q25.1	WDR96	rs642743-?	NR	9E-6		1.6267596	[1.31-2.02]	Illumina [at least 4756722] (imputed)	N
1393	chr10	105934757	105934758	rs190519117	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	10q25.1	CFAP43	rs190519117-T	0.04	5E-6	(African American)	0.46	0.27-0.66 unit decrease	Illumina [NR] (imputed)	N
1393	chr10	105966403	105966404	rs515910	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	10q25.1	C10orf79	rs515910-?	NR	4E-6				Affymetrix [504219]	N
1393	chr10	105991894	105991895	rs3740468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	GSTO1	rs3740468-?	NR	1E-6	(glycerol-3-phosphate)	0.52627987	[0.31-0.74] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1393	chr10	106001414	106001415	rs71473516	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs71473516-C	0.01916	4E-13	(GSTO1)	1.004	NR unit decrease	Illumina [1671387] (imputed)	N
1393	chr10	106005323	106005323	rs369636044	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.1	NR	rs369636044-GTGCAGGACTGGCAGGCAGCTCCACCTGCAGCCCCCTACGGGA	0.26	3E-232	(Glutathione S-transferase omega-1, GSTO1.12436.84.3)	0.85	[0.79-0.91] unit decrease	Affymetrix [10572788] (imputed)	N
1393	chr10	106012827	106012828	rs610917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs610917-A	0.506	4E-8	(MTAG)	0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1393	chr10	106020397	106020398	rs2282326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTO1	5,352 Icelandic ancestry individuals	NA	10q25.1		rs2282326-C	0.3593	4E-265		0.603333	[0.57-0.64] unit decrease	Illumina [7506463] (imputed)	N
1393	chr10	106020397	106020398	rs2282326	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.1	GSTO1	rs2282326-C	0.354	2E-437	(Glutathione S-transferase omega-1, GSTO1.12436.84.3)	0.91	[0.87-0.95] unit decrease	Affymetrix [10572788] (imputed)	N
1393	chr10	106025257	106025258	rs1147611	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q25.1	GSTO1	rs1147611-G	0.64015625	3E-139	(GSTO1, 12436_84_3)	0.6026642	[0.56-0.65] unit increase	Illumina [> 1000000] (imputed)	N
1393	chr10	106030686	106030687	rs76620346	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GSTO2	rs76620346-?	NR	4E-8	(female)	0.59789	[NR] unit increase	Affymetrix [NR] (imputed)	N
1394	chr10	106078936	106078937	rs34970111	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.1	NR	rs34970111-T	0.458	2E-9		0.00666878	[0.0045-0.0088] unit decrease	NR [9732723] (imputed)	N
1394	chr10	106078936	106078937	rs34970111	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q25.1	NR	rs34970111-T	0.458	1E-8	(Conditioned on chr10:106929313, chr10:106460460)	0.014555721	[0.0095-0.0196] unit decrease	NR [~ 10000000] (imputed)	N
1394	chr10	106084970	106084971	rs276226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q25.1	RP11-127L20.3, ITPRIP	rs276226-C	0.303953	6E-10		0.015113359	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1394	chr10	106087480	106087481	rs276220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.1	NR	rs276220-T	0.687778	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
1394	chr10	106106873	106106874	rs10883994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q25.1	NR	rs10883994-G	0.692428	8E-15		0.0161	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1395	chr10	106205074	106205075	rs11599218	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q25.1	NR	rs11599218-G	NR	4E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1395	chr10	106208797	106208798	rs72827910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.1	Intergenic	rs72827910-A	0.133	9E-9	(MTAG)	0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr10	106251707	106251708	rs71473523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.1	NR	rs71473523-?	NR	5E-6		4.565	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1395	chr10	106263654	106263655	rs10786799	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q25.1	RP11-127O4.3	rs10786799-T	0.0028	8E-6		0.7232	[0.41-1.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1395	chr10	106266643	106266644	rs74157123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q25.1		rs74157123-T	NR	4E-16		0.2448	[0.19-0.3] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1395	chr10	106266643	106266644	rs74157123	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q25.1	RP11-127O4.3	rs74157123-T	0.0101079	4E-16		0.24479422	[0.19-0.3] unit increase	Affymetrix [7288503] (imputed)	N
1395	chr10	106272187	106272188	rs75337836	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	RP11-127O4.3	rs75337836-T	0.0101	3E-13		0.0625068	[0.046-0.079] unit increase	Affymetrix [up to 29454346] (imputed)	N
1395	chr10	106273107	106273108	rs72809818	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs72809818-T	0.8819	4E-10	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr10	106281628	106281629	rs6584608	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs6584608-T	0.2206	4E-9	(MTAG)	0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1396	chr10	106371783	106371784	rs1855581	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.1	NR	rs1855581-G	0.235	7E-6	(EA)	0.0326	[0.018-0.047] unit increase	Illumina [~ 11800000] (imputed)	N
1396	chr10	106399139	106399140	rs535313355	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs535313355-C	0.0087	1E-17		0.08139746	[0.063-0.1] unit increase	Affymetrix [up to 29454346] (imputed)	N
1396	chr10	106399139	106399140	rs535313355	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs535313355-C	0.0087	4E-9		0.05659966	[0.038-0.076] unit increase	Illumina [up to 29454346] (imputed)	N
1396	chr10	106399139	106399140	rs535313355	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs535313355-C	0.00896	4E-14		0.07188641	[0.053-0.091] unit increase	Affymetrix [up to 29454346] (imputed)	N
1396	chr10	106413045	106413046	rs11192147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs11192147-A	0.4468	5E-11	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1396	chr10	106413045	106413046	rs11192147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q25.1	Intergenic	rs11192147-C	0.5532	7E-9		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1396	chr10	106413045	106413046	rs11192147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs11192147-A	0.4455	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1396	chr10	106418968	106418969	rs4537697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.1	Intergenic	rs4537697-A	0.4987	2E-9	(MTAG)	0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr10	106433437	106433438	rs78911933	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	10q25.1	SORCS3	rs78911933-G	NR	2E-6		0.13834	[0.081-0.196] unit decrease	Illumina [at least 950000] (imputed)	N
1397	chr10	106445444	106445445	rs111790405	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q25.1	SORCS3	rs111790405-T	0.0117	3E-10		0.8697	[0.6-1.14] mmHg increase	Affymetrix [NR] (imputed)	N
1397	chr10	106451869	106451870	rs61861255	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	10q25.1	SORCS3	rs61861255-A	0.093617	6E-6		1.21298	[0.7-1.73] unit increase	NR [7263501] (imputed)	N
1397	chr10	106453831	106453832	rs11596214	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.1		rs11596214-G	0.606	6E-21		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1397	chr10	106453831	106453832	rs11596214	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	10q25.1	SORCS3	rs11596214-G	0.4404	2E-18		0.020037634	[0.015-0.025] unit increase	NR [9417325] (imputed)	N
1397	chr10	106453831	106453832	rs11596214	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	10q25.1	SORCS3	rs11596214-G	NR	7E-9		0.010088	[0.0067-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	10q25.1	SORCS3	rs11599236-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	10q25.1	NR	rs11599236-T	NR	6E-10		6.185	NR z score increase	NR [NR]	N
1397	chr10	106454671	106454672	rs11599236	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	10q25.1	NR	rs11599236-T	0.592	3E-8		1.0298661	[1.02-1.04]	NR [5276842] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	10q25.1	SORCS3	rs11599236-T	0.4058	3E-8		0.0138	[0.0089-0.0187] unit increase	NR [NR]	N
1397	chr10	106454671	106454672	rs11599236	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	10q25.1	SORCS3	rs11599236-?	NR	5E-10		0.00729463	[0.005-0.0096] unit increase	Affymetrix [NR] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10q25.1	NR	rs11599236-C	0.416473087071768	1E-15		0.007442469	[0.0056-0.0093] unit decrease	NR [NR]	N
1397	chr10	106454671	106454672	rs11599236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	10q25.1		rs11599236-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs11599236-T	0.5838	1E-13		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	10q25.1	NR	rs11599236-C	NR	3E-11		0.01585	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	10q25.1	NR	rs11599236-C	0.4091	8E-8		0.0065	[0.0041-0.0089] unit decrease	NR [7666894] (imputed)	N
1397	chr10	106454671	106454672	rs11599236	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	10q25.1	SORCS3	rs11599236-T	0.407423	2E-12		7.05	z score increase	NR [10847151] (imputed)	N
1397	chr10	106458626	106458627	rs12416372	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	10q25.1	SORCS3	rs12416372-G	NR	7E-9		0.0099771	[0.0066-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
1397	chr10	106460459	106460460	rs9787523	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	10q25.1	SORCS3	rs9787523-?		4E-10				NR [6786993] (imputed)	N
1397	chr10	106460459	106460460	rs9787523	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.1	NR	rs9787523-C	0.418	6E-14		0.00826962	[0.0061-0.0104] unit decrease	NR [9732723] (imputed)	N
1397	chr10	106460459	106460460	rs9787523	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q25.1	NR	rs9787523-C	0.418	1E-9		0.01562732	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q25.1	SORCS3	rs3896224-A	0.587734	3E-21		0.0197876	[0.016-0.024] unit decrease	NR [16516521] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	10q25.1	NR	rs3896224-A	0.58	7E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	10q25.1	NR	rs3896224-A	0.598438	3E-7		1.0741138	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	10q25.1		rs3896224-A	0.585	1E-11		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q25.1		rs3896224-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.1	Intergenic	rs3896224-A	0.5822	5E-14	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr10	106467852	106467853	rs3896224	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q25.1	NR	rs3896224-A	NR	3E-8		5.525	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1397	chr10	106520974	106520975	rs181200083	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs181200083-C	0.0088	1E-21		0.09217874	[0.073-0.111] unit increase	Affymetrix [up to 29454346] (imputed)	N
1397	chr10	106520974	106520975	rs181200083	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs181200083-C	0.0089	2E-11		0.065589175	[0.046-0.085] unit increase	Illumina [up to 29454346] (imputed)	N
1397	chr10	106520974	106520975	rs181200083	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs181200083-C	0.0088	6E-17		0.08079988	[0.062-0.1] unit increase	Affymetrix [up to 29454346] (imputed)	N
1397	chr10	106532223	106532224	rs902305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q25.1	Intergenic	rs902305-A	0.7336	7E-12		0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1397	chr10	106532223	106532224	rs902305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs902305-A	0.7313	2E-22	(MTAG)	0.0144	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1397	chr10	106532223	106532224	rs902305	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.1	NR	rs902305-?	NR	9E-6		4.45	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1397	chr10	106544215	106544216	rs11596241	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	10q25.1	NR	rs11596241-?		1E-8				NR [520857]	N
1397	chr10	106550943	106550944	rs17186548	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	10q25.1		rs17186548-?	NR	2E-16		0.027	unit decrease	NR [NR]	N
1397	chr10	106557943	106557944	rs2491392	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q25.1	SORCS3	rs2491392-C	0.694	2E-8		0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1397	chr10	106559286	106559287	rs11599313	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	10q25.1	NR	rs11599313-T	NR	4E-9		5.895	NR z score decrease	NR [NR]	N
1397	chr10	106560224	106560225	rs1490176	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10q25.1	NR	rs1490176-A	0.715110237225861	2E-12		0.008875138	[0.0064-0.0113] unit decrease	NR [NR]	N
1397	chr10	106560224	106560225	rs1490176	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q25.1	NR	rs1490176-A	0.715110237225861	1E-12		0.011541981	[0.0083-0.0147] unit decrease	NR [NR]	N
1397	chr10	106560224	106560225	rs1490176	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	10q25.1	NR	rs1490176-A	0.715110237225861	1E-11		0.0094158985	[0.0067-0.0121] unit decrease	NR [NR]	N
1397	chr10	106560224	106560225	rs1490176	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	10q25.1	NR	rs1490176-?	NR	2E-8		0.01435	[0.0093-0.0194] unit increase	Affymetrix [10847151] (imputed)	N
1398	chr10	106563923	106563924	rs61867293	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	10q25.1	NR	rs61867293-C	NR	6E-12		1.0416667		NR [NR] (imputed)	N
1398	chr10	106563923	106563924	rs61867293	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	10q25.1	SORCS3	rs61867293-?		8E-15				NR [6786993] (imputed)	N
1398	chr10	106563923	106563924	rs61867293	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	10q25.1		rs61867293-T	0.216	1E-6		0.05	[0.03-0.07] unit decrease	Illumina [NR] (imputed)	N
1398	chr10	106563923	106563924	rs61867293	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	10q25.1	SORCS3	rs61867293-C	0.8	7E-10		1.0416667	[1.03-1.05]	NR [9622763] (imputed)	N
1398	chr10	106569206	106569207	rs61867294	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	10q25.1	NR	rs61867294-A	0.7962	2E-8		0.0758489	[0.049-0.102] unit increase	NR [NR]	N
1398	chr10	106569206	106569207	rs61867294	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	10q25.1	NR	rs61867294-?		2E-8				NR [8377093]	N
1398	chr10	106569206	106569207	rs61867294	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q25.1	NR	rs61867294-A	NR	2E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1398	chr10	106569252	106569253	rs11192193	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	10q25.1	NR	rs11192193-?		1E-9				NR [520857]	N
1398	chr10	106569252	106569253	rs11192193	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q25.1	SORCS3	rs11192193-?	NR	7E-9		0.011813877	[0.0078-0.0158] unit decrease	NR [7306098]	N
1398	chr10	106600342	106600343	rs7900775	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	10q25.1	SORCS3	rs7900775-T	NR	4E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1398	chr10	106610838	106610839	rs1021363	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	10q25.1	SORCS3	rs1021363-A	0.36	5E-10		0.031	unit increase	NR [2324712] (imputed)	N
1398	chr10	106610838	106610839	rs1021363	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	10q25.1		rs1021363-?	NR	1E-19		0.0279	unit increase	NR [NR]	N
1398	chr10	106610838	106610839	rs1021363	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	10q25.1	NR	rs1021363-A	NR	4E-12		6.952	NR z score increase	NR [NR]	N
1398	chr10	106610838	106610839	rs1021363	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	10q25.1	NR	rs1021363-A	0.3566	2E-14		0.03288871	[0.024-0.041] unit increase	NR [NR]	N
1398	chr10	106610838	106610839	rs1021363	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	10q25.1	NR	rs1021363-A	0.337999999999999	1E-8		0.07219548	[0.048-0.097] unit increase	NR [NR]	N
1398	chr10	106610838	106610839	rs1021363	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	10q25.1	NR	rs1021363-A	0.3547	4E-23		1.023	[1.018-1.027]	NR [8098588] (imputed)	N
1398	chr10	106610838	106610839	rs1021363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q25.1	NR	rs1021363-G	0.647051740858235	1E-13		0.01070043	[0.0079-0.0135] unit decrease	NR [NR]	N
1398	chr10	106610838	106610839	rs1021363	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	10q25.1	NR	rs1021363-G	0.6422	1E-8		0.007	[0.0046-0.0094] unit decrease	NR [7666894] (imputed)	N
1398	chr10	106614570	106614571	rs10786831	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	10q25.1	NR	rs10786831-A	NR	2E-6		1.026	[1.015-1.036]	NR [5276842] (imputed)	N
1398	chr10	106614570	106614571	rs10786831	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	10q25.1	SORCS3	rs10786831-G	0.600689	8E-9		0.0297	[0.018-0.041] unit decrease	Illumina [1220000] (imputed)	N
1398	chr10	106616353	106616353	rs755895472	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	10q25.1	SORCS3	rs755895472-C	0.6008	2E-9		0.0604	[0.041-0.08] unit increase	NR [9744772] (imputed)	N
1398	chr10	106616639	106616640	rs2491383	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q25.1	NR	rs2491383-G	0.599	1E-10		0.00956608	[0.0067-0.0125] unit increase	NR [9732723] (imputed)	N
1398	chr10	106618447	106618448	rs10786832	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs10786832-T	0.3988	6E-20	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr10	106629858	106629859	rs145158522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	10q25.1		rs145158522-T	NR	9E-11		0.2338	[0.16-0.3] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1398	chr10	106629858	106629859	rs145158522	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10q25.1	SORCS3	rs145158522-T	0.0120438	9E-11		0.23376073	[0.16-0.3] unit increase	Affymetrix [7288503] (imputed)	N
1398	chr10	106629858	106629859	rs145158522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q25.1		rs145158522-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1398	chr10	106632477	106632478	rs2496022	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	10q25.1	NR	rs2496022-C	0.6597	4E-14		0.0169	[0.013-0.021] unit decrease	Illumina [NR] (imputed)	N
1398	chr10	106632477	106632478	rs2496022	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	10q25.1	NR	rs2496022-C	0.6597	7E-11		0.0164	[0.012-0.021] unit decrease	Illumina [NR] (imputed)	N
1398	chr10	106632876	106632877	rs2451500	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	10q25.1	NR	rs2451500-T	0.6535	6E-11		0.0191	[0.013-0.025] unit decrease	Illumina [NR] (imputed)	N
1398	chr10	106635996	106635997	rs1961639	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	10q25.1	NR	rs1961639-?		4E-9				NR [11140414]	N
1398	chr10	106635996	106635997	rs1961639	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	10q25.1	NR	rs1961639-A	NR	4E-9		5.891	z score decrease	Affymetrix [10847151] (imputed)	N
1398	chr10	106635996	106635997	rs1961639	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	10q25.1	NR	rs1961639-G	0.3369	2E-12		0.0137	[0.01-0.0174] unit decrease	Illumina [NR] (imputed)	N
1398	chr10	106636595	106636596	rs2496024	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	10q25.1	NR	rs2496024-?		5E-13				NR [520857]	N
1398	chr10	106670573	106670574	rs61867341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10q25.1	NR	rs61867341-A	0.242001018173803	2E-9		0.006459587	[0.0044-0.0086] unit decrease	NR [NR]	N
1398	chr10	106673073	106673074	rs10884064	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs10884064-?	NR	9E-10				Affymetrix [NR]	N
1398	chr10	106674784	106674785	rs11192230	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	10q25.1	NR	rs11192230-A	NR	3E-11		6.652	NR z score increase	NR [NR]	N
1398	chr10	106677340	106677341	rs2864034	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.1	Intergenic	rs2864034-A	0.1995	2E-16	(MTAG)	0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr10	106677340	106677341	rs2864034	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.1	Intergenic	rs2864034-C	0.8005	1E-12		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1398	chr10	106684168	106684169	rs12765671	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	10q25.1	NR	rs12765671-G		5E-6		0.6023	[0.34-0.86] SD units increase	NR [10700000] (imputed)	N
1398	chr10	106691452	106691453	rs6584642	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	C10orf80	rs6584642-?	NR	6E-6	(LPE 16:0)	0.28417373	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1399	chr10	106700393	106700394	rs7074335	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	10q25.1	NR	rs7074335-T	NR	2E-6		4.758858	[NR] z score increase	Affymetrix [up to 6544862] (imputed)	N
1399	chr10	106733504	106733505	rs7906899	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	10q25.1	SORCS3	rs7906899-A	0.2167	2E-18		0.023837054	[0.018-0.03] unit increase	NR [9417325] (imputed)	N
1399	chr10	106738674	106738675	rs7914674	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs7914674-T	0.7832	2E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr10	106744533	106744534	rs12265655	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	10q25.1	NR	rs12265655-T	0.7704	2E-11		0.098355666	[0.07-0.127] unit increase	NR [NR]	N
1399	chr10	106744533	106744534	rs12265655	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Mental disorder (without autoimmune disease)	42,866 Danish ancestry cases, 19,790 Danish ancestry controls	NA	10q25.1	NR	rs12265655-?	NR	1E-8				NR [7721839] (imputed)	N
1399	chr10	106745103	106745104	rs6584649	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	10q25.1	NR	rs6584649-?		6E-9				NR [520857]	N
1399	chr10	106745103	106745104	rs6584649	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	10q25.1	NR	rs6584649-?		1E-11				NR [520857]	N
1399	chr10	106747353	106747354	rs11591402	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	10q25.1	NR	rs11591402-?		1E-8				NR [8028859]	N
1399	chr10	106747353	106747354	rs11591402	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	10q25.1	SORCS3	rs11591402-T	NR	4E-9		1.0471205	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1399	chr10	106763562	106763563	rs1997066	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	10q25.1	SORCS3	rs1997066-?	NR	4E-6	(dominant )	1.4705882		Affymetrix [NR]	N
1399	chr10	106764192	106764193	rs10400054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q25.1	Intergenic	rs10400054-A	0.7932	2E-11		0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr10	106764747	106764748	rs17118088	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs17118088-A	0.2074	5E-18	(MTAG)	0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1399	chr10	106768280	106768281	rs12252384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs12252384-T	0.8052	5E-14	(MTAG)	0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1399	chr10	106776483	106776484	rs790647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs790647-A	0.2278	4E-18		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr10	106776483	106776484	rs790647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.1	Intergenic	rs790647-A	0.2294	3E-12	(MTAG)	0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1399	chr10	106778509	106778510	rs11192283	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10q25.1	NR	rs11192283-C	0.234035262933988	4E-8		0.007903826	[0.0051-0.0107] unit decrease	NR [NR]	N
1399	chr10	106778509	106778510	rs11192283	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q25.1	NR	rs11192283-C	0.234035262933988	3E-9		0.010378732	[0.007-0.0138] unit decrease	NR [NR]	N
1399	chr10	106778509	106778510	rs11192283	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	10q25.1	NR	rs11192283-C	0.234035262933988	2E-8		0.008453003	[0.0055-0.0114] unit decrease	NR [NR]	N
1399	chr10	106778509	106778510	rs11192283	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q25.1	NR	rs11192283-C	0.234035262933988	3E-9		0.0066775037	[0.0045-0.0089] unit decrease	NR [NR]	N
1399	chr10	106786642	106786643	rs2791459	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	10q25.1	SORCS3	rs2791459-C	NR	7E-9		0.010104	[0.0067-0.0135] unit decrease	Affymetrix [18485882] (imputed)	N
1399	chr10	106786642	106786643	rs2791459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	10q25.1		rs2791459-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1399	chr10	106805349	106805350	rs1869165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q25.1		rs1869165-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1399	chr10	106805350	106805351	rs540369678	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - amlodipine (UKB data field 20003_1140879802)	18,435 European ancestry cases, 437,841 European ancestry controls	NA	10q25.1		rs540369678-T	0.009028	1E-10		0.37	[0.26-0.48] unit increase	NR [11842647] (imputed)	N
1399	chr10	106805350	106805351	rs540369678	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs540369678-T	0.0092	2E-14		0.06926143	[0.051-0.087] unit increase	Affymetrix [up to 29454346] (imputed)	N
1399	chr10	106805350	106805351	rs540369678	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	SORCS3	rs540369678-T	0.00951	2E-13		0.06667831	[0.049-0.085] unit increase	Affymetrix [up to 29454346] (imputed)	N
1399	chr10	106810614	106810615	rs117792039	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	10q25.1	Intergenic	rs117792039-A	NR	2E-7	(between families)	5.158	unit increase	Affymetrix [up to 15107142] (imputed)	N
1400	chr10	106889201	106889202	rs703482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs703482-C	0.1482	4E-9	(MTAG)	0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1400	chr10	106894941	106894942	rs191784289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q25.1		rs191784289-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1400	chr10	106894941	106894942	rs191784289	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10q25.1	SORCS3	rs191784289-C	0.9877	5E-18		0.7062	[0.55-0.87] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1400	chr10	106925537	106925538	rs727341	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.1	NR	rs727341-C	0.224	4E-10		0.00806396	[0.0055-0.0106] unit decrease	NR [9732723] (imputed)	N
1400	chr10	106929312	106929313	rs11192347	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q25.1	NR	rs11192347-A	0.104	6E-10	(Conditioned on chr10:106460460)	0.026450014	[0.018-0.035] unit decrease	NR [~ 10000000] (imputed)	N
1400	chr10	106931372	106931373	rs184389714	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	10q25.1	NR	rs184389714-T	0.002	2E-10	(Unifrac metric)	6.277108	NR z-score increase	Illumina [5293637] (imputed)	N
1400	chr10	106935208	106935209	rs10786848	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	10q25.1	LOC105378465/SORCS3	rs10786848-?	NR	7E-6				Illumina [622468]	N
1400	chr10	106947005	106947006	rs1947988	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q25.1	SORCS3	rs1947988-T	NR	2E-8		0.019305985	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1400	chr10	106947005	106947006	rs1947988	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	10q25.1	SORCS3	rs1947988-?	NR	1E-8		5.706	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1400	chr10	106947005	106947006	rs1947988	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	10q25.1	SORCS3	rs1947988-?	NR	8E-7		4.936	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1401	chr10	106961403	106961404	rs1484246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs1484246-A	0.2333	4E-9	(MTAG)	0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr10	106961403	106961404	rs1484246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.1	NR	rs1484246-?	NR	1E-6		4.821	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1401	chr10	106983027	106983028	rs191572726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q25.1		rs191572726-C	NR	3E-14		0.2787	[0.21-0.35] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1401	chr10	106983027	106983028	rs191572726	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	10q25.1	SORCS3	rs191572726-C	0.0122709	3E-14		0.2786857	[0.21-0.35] unit increase	Affymetrix [7288503] (imputed)	N
1401	chr10	106996963	106996964	rs7895991	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	10q25.1	NR	rs7895991-C	0.217694	3E-8		0.042048436	[0.027-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1401	chr10	106996963	106996964	rs7895991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q25.1	Intergenic	rs7895991-T	0.2407	3E-8		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1401	chr10	107050167	107050168	rs2930456	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	10q25.1	NR	rs2930456-C	0.125202	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1401	chr10	107062623	107062624	rs55680960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.1	Intergenic	rs55680960-C	0.28	3E-10	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1401	chr10	107062684	107062685	rs78032159	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	10q25.1		rs78032159-G	NR	2E-8		0.485	[0.32-0.65] unit increase	Affymetrix [509886] (imputed)	N
1401	chr10	107064918	107064919	rs771652991	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q25.1	NR	rs771652991-?	NR	8E-6		0.0077649	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1401	chr10	107077271	107077272	rs11818462	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10q25.1	Intergenic	rs11818462-?	NR	8E-6		1.6753225	[NR]	Affymetrix [492217] (imputed)	N
1401	chr10	107084313	107084314	rs11192399	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs11192399-?	NR	1E-8				Affymetrix [NR]	N
1402	chr10	107095369	107095370	rs12359689	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	10q25.1	SORCS3	rs12359689-A	0.108381	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
1402	chr10	107106369	107106370	rs10509790	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs10509790-C	0.6543	3E-10	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1402	chr10	107170893	107170894	rs12356045	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.1		rs12356045-G	0.744	9E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1402	chr10	107170893	107170894	rs12356045	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10q25.1	NA	rs12356045-G		1E-8		0.0124755	[0.0082-0.0168] unit decrease	Illumina [13288253] (imputed)	N
1402	chr10	107170893	107170894	rs12356045	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.1	Intergenic	rs12356045-A	0.2469	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1402	chr10	107170893	107170894	rs12356045	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs12356045-A	0.2468	3E-10	(MTAG)	0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1403	chr10	107229374	107229375	rs72825713	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	10q25.1	NR	rs72825713-A	0.110241	4E-8		5.5	z score decrease	NR [10847151] (imputed)	N
1403	chr10	107340161	107340162	rs11192507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs11192507-A	0.5926	4E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr10	107354811	107354812	rs74361312	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar percentage of high attenuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	3,013 European ancestry individuals	10q25.1	SORCS3	rs74361312-G	0.03	4E-8	(Chinese)	0.495	[0.32-0.67] unit increase	Affymetrix [at least 897981] (imputed)	N
1404	chr10	107361888	107361889	rs17805214	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	10q25.1	NR	rs17805214-T	0.154493	1E-8		5.68	z score increase	NR [10847151] (imputed)	N
1404	chr10	107363587	107363588	rs10736180	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.1	NR	rs10736180-?	NR	6E-8		5.42	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1404	chr10	107370554	107370555	rs117627418	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	RP11-45P22.2	rs117627418-T	0.0085	2E-11		0.065894574	[0.047-0.085] unit increase	Affymetrix [up to 29454346] (imputed)	N
1404	chr10	107370554	107370555	rs117627418	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	10q25.1	RP11-45P22.2	rs117627418-T	0.0085	1E-10		0.06310154	[0.044-0.082] unit increase	Affymetrix [up to 29454346] (imputed)	N
1404	chr10	107394990	107394991	rs17119235	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs17119235-?	NR	4E-7				Affymetrix [NR]	N
1404	chr10	107407315	107407316	rs144529734	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q25.1	NR	rs144529734-?	NR	6E-8	(Latino)	1.301	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1404	chr10	107453303	107453304	rs61875400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.1	Intergenic	rs61875400-T	0.171	2E-9	(MTAG)	0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr10	107459730	107459730	rs5787602	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	10q25.1	NR	rs5787602-T	0.1316	2E-7		0.2312	[0.14-0.32] unit increase	Illumina [10677593] (imputed)	N
1404	chr10	107461124	107461125	rs10884216	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	10q25.1	NR	rs10884216-T	NR	6E-7		4.994715	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1405	chr10	107491894	107491895	rs12764593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.1	Intergenic	rs12764593-C	0.0622	6E-12	(MTAG)	0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr10	107491894	107491895	rs12764593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.1	Intergenic	rs12764593-G	0.9378	3E-9		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr10	107491894	107491895	rs12764593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs12764593-C	0.062	2E-15	(MTAG)	0.0273	[0.021-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr10	107491894	107491895	rs12764593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs12764593-C	0.0622	6E-12		0.0202	[0.015-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr10	107491894	107491895	rs12764593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs12764593-C	0.0622	3E-14	(MTAG)	0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr10	107516351	107516352	rs17119461	21706340	Teerlink C	2011-06-26	Hum Genet	A unique genome-wide association analysis in extended Utah high-risk pedigrees identifies a novel melanoma risk variant on chromosome arm 10q.	Melanoma	156 European ancestry cases from 34 high-risk families, 2,150 European ancestry controls	NA	10q25.1	NR	rs17119461-?	0.04	7E-12		8.4	[4.20-17.0]	Illumina [491227]	N
1405	chr10	107521501	107521502	rs17807910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q25.1		rs17807910-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1405	chr10	107567082	107567083	rs12772959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs12772959-C	0.1668	4E-11	(conditional-joint)	0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr10	107568997	107568998	rs12571678	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.1	NR	rs12571678-?	NR	4E-6		4.608	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1405	chr10	107573808	107573809	rs11192613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q25.1		rs11192613-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1405	chr10	107574085	107574086	rs11192614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q25.1		rs11192614-C	NR	9E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1406	chr10	107619931	107619932	rs12761729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs12761729-T	0.7366	2E-10	(MTAG)	0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr10	107619931	107619932	rs12761729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs12761729-T	0.7441	2E-9		0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1406	chr10	107619931	107619932	rs12761729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs12761729-T	0.7441	3E-11	(MTAG)	0.0101	[0.0072-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr10	107652143	107652144	rs7912226	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	10q25.1	NR	rs7912226-A	NR	8E-10		0.01462	[0.01-0.0193] unit decrease	Affymetrix [10847151] (imputed)	N
1406	chr10	107652143	107652144	rs7912226	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	10q25.1	NR	rs7912226-A	0.400911	2E-8		5.6	z score decrease	NR [10847151] (imputed)	N
1406	chr10	107652143	107652144	rs7912226	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	10q25.1	NR	rs7912226-A	0.400911	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
1406	chr10	107652143	107652144	rs7912226	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	10q25.1	NR	rs7912226-A	0.400911	1E-10		6.46	z score decrease	NR [10847151] (imputed)	N
1406	chr10	107654712	107654713	rs2683653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	10q25.1		rs2683653-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1406	chr10	107668392	107668393	rs1826787	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	10q25.1	NR	rs1826787-T	NR	2E-9		0.02258	[0.015-0.03] unit decrease	Affymetrix [10847151] (imputed)	N
1406	chr10	107680239	107680240	rs149186070	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q25.1	NR	rs149186070-?	NR	5E-6		0.0077331	[0.0044-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1406	chr10	107712737	107712738	rs142995252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	10q25.1	NR	rs142995252-?	NR	6E-6		0.9163	[0.51-1.33] unit decrease	Illumina [at least 560000] (imputed)	N
1407	chr10	107809042	107809043	rs7073667	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (sleep problems) (binary trait)	72,302 European ancestry cases, 76,450 European ancestry controls	NA	10q25.1	RP11-298H24.1	rs7073667-T	0.452	4E-8		0.01	[0.0061-0.0139] unit increase	NR [9413637] (imputed)	N
1408	chr10	107884874	107884875	rs10786910	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	10q25.1	YWHAZP5, LOC100132397	rs10786910-?	NR	6E-6		3.1	[1.8-5.1]	Illumina [1057565]	N
1409	chr10	108038890	108038891	rs149119261	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	10q25.1	NR	rs149119261-C	NR	2E-6		4.73	z score increase	NR [9015039] (imputed)	N
1409	chr10	108039769	108039770	rs10786938	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	10q25.1	SORCS1	rs10786938-T	0.71	4E-7	(EA)	1.23	[1.15-1.31]	Affymetrix, Illumina [10973920] (imputed)	N
1410	chr10	108228592	108228593	rs151050344	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	10q25.1	NR	rs151050344-?	NR	5E-6		0.11400741	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1410	chr10	108245725	108245729	rs529961182	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10q25.1		rs529961182-A	NR	1E-6		2.10392		Affymetrix, Illumina [62056310] (imputed)	N
1410	chr10	108254463	108254464	rs2039964	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q25.1	intergenic	rs2039964-A		7E-6		0.2877	unit decrease	Illumina [5767231] (imputed)	N
1411	chr10	108294622	108294623	rs138543497	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10q25.1	NR	rs138543497-T	NR	5E-6		0.4901	[0.28-0.7] unit increase	Illumina [11133794] (imputed)	N
1411	chr10	108345951	108345952	rs77609995	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	10q25.1	NR	rs77609995-?		3E-6		34.2748	[20.16-48.39] unit decrease	NR [NR] (imputed)	N
1411	chr10	108369237	108369238	rs6584756	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	10q25.1	SORCS1	rs6584756-T	0.0877178188899708	4E-6	(EA)	0.3594	[0.21-0.51] unit increase	Illumina [at least 988306] (imputed)	N
1411	chr10	108370790	108370791	rs78411870	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	10q25.1	NR	rs78411870-C		8E-6		0.1448	[0.071-0.219] SD units decrease	NR [10700000] (imputed)	N
1412	chr10	108414763	108414764	rs978571	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q25.1	NR	rs978571-?	NR	3E-6	(Latino)	0.7898	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1412	chr10	108437638	108437639	rs821931	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	10q25.1	SORCS1	rs821931-G		9E-6		1.587		Affymetrix [NR]	N
1412	chr10	108442228	108442229	rs113226859	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q25.1		rs113226859-A	NR	6E-8		5.0667	[3.29-6.85] unit increase	Illumina [NR] (imputed)	N
1412	chr10	108498077	108498078	rs2486152	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	10q25.1	SORCS1	rs2486152-A		7E-6		0.1	[0.06-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1414	chr10	108754042	108754043	rs7919051	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	10q25.1	NR	rs7919051-A	NR	5E-6		0.07687	[0.044-0.11] unit decrease	Illumina [541614]	N
1414	chr10	108759227	108759228	rs11193156	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	10q25.1		rs11193156-T	0.895316	2E-7		0.0161295	[0.01-0.022] unit decrease	Illumina [13900000] (imputed)	N
1414	chr10	108759227	108759228	rs11193156	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	10q25.1		rs11193156-T	0.900324	1E-7		0.0241311	[0.015-0.033] unit decrease	Illumina [13900000] (imputed)	N
1414	chr10	108767287	108767288	rs7075315	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	SORCS3	rs7075315-?	NR	2E-6	(hydroxyproline)	2.1821659	[1.28-3.08] unit increase	Affymetrix [at least 2500000] (imputed)	N
1415	chr10	108880454	108880455	rs607437	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	10q25.1	SORCS1	rs607437-?	0.44	9E-6	(men)	0.244	NR unit increase	Illumina [628376]	N
1416	chr10	108969877	108969878	rs144585141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs144585141-G	0.01568	8E-9	(FGG)	0.4179	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	108969877	108969878	rs144585141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs144585141-G	0.01568	3E-10	(FGA)	0.3021	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	108969877	108969878	rs144585141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs144585141-G	0.01568	1E-8	(SOD2)	1.964	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	108969877	108969878	rs144585141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs144585141-G	0.01568	1E-8	(CTSS)	0.01048	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	108978235	108978236	rs1890078	34011927	Park JH	2021-05-19	Transl Psychiatry	Novel Alzheimer's disease risk variants identified based on whole-genome sequencing of APOE ?4 carriers.	Alzheimer's disease in APOE e4+ carriers	331 Korean ancestry cases, 169 Korean ancestry controls	190 Korean ancestry cases, 97 Korean ancestry controls			rs1890078-?	NR	7E-7		0.43	[0.3-0.61]	Illumina [22526987]	N
1416	chr10	109050373	109050374	rs141385754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs141385754-C	0.01568	8E-9	(FGG)	0.4179	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	109050373	109050374	rs141385754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs141385754-C	0.01568	3E-10	(FGA)	0.3021	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	109050373	109050374	rs141385754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs141385754-C	0.01568	1E-8	(SOD2)	1.964	NR unit increase	Illumina [1671387] (imputed)	N
1416	chr10	109050373	109050374	rs141385754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs141385754-C	0.01568	1E-8	(CTSS)	0.01048	NR unit increase	Illumina [1671387] (imputed)	N
1417	chr10	109104039	109104040	rs1934036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs1934036-?	NR	1E-10				Affymetrix [NR]	N
1417	chr10	109170923	109170924	rs7476984	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	10q25.1	RP11-432B10.1	rs7476984-A	0.4	2E-7		2.826	[1.77-3.88] unit increase	Illumina [NR] (imputed)	N
1418	chr10	109223038	109223039	rs118104693	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs118104693-C	0.01742	4E-9	(FGA)	0.2714	NR unit increase	Illumina [1671387] (imputed)	N
1418	chr10	109223038	109223039	rs118104693	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs118104693-C	0.01742	2E-8	(CTSS)	0.009799	NR unit increase	Illumina [1671387] (imputed)	N
1418	chr10	109304692	109304693	rs2418959	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	10q25.1	LINC01435	rs2418959-C	0.5359	4E-7		0.0052	[0.0032-0.0072] unit increase	Affymetrix [~ 7740000] (imputed)	N
1419	chr10	109338287	109338288	rs7918265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.1	NR	rs7918265-T	0.604	3E-8		0.00629295	[0.0041-0.0085] unit decrease	NR [9732723] (imputed)	N
1419	chr10	109347601	109347602	rs4917504	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	10q25.1	NR	rs4917504-?	NR	4E-6				Illumina [NR] (imputed)	N
1419	chr10	109352006	109352007	rs4918308	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	10q25.1	NR	rs4918308-?	NR	4E-6				Illumina [NR] (imputed)	N
1419	chr10	109374383	109374384	rs11193561	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	10q25.1	SORCS1, LOC100128304	rs11193561-A	0.239	6E-6		1.19	[NR]	Illumina [580699]	N
1419	chr10	109380263	109380264	rs10884482	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	10q25.1	intergenic	rs10884482-T	0.07	6E-8				Affymetrix, Illumina [~ 2500000] (imputed)	N
1419	chr10	109401388	109401389	rs56864957	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10q25.1	NR	rs56864957-?	NR	6E-6		6019.5615	NR unit decrease	Illumina [2379855]	N
1419	chr10	109418979	109418980	rs1902740	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	10q25.1	NR	rs1902740-C	0.28	1E-6		0.069	[0.042-0.096] unit decrease	NR [9260588] (imputed)	N
1420	chr10	109509537	109509538	rs2900783	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q25.1	intergenic	rs2900783-?	NR	2E-6		0.186	[0.11-0.26] unit increase	Illumina [at least 13000000] (imputed)	N
1420	chr10	109510094	109510095	rs4608000	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	10q25.1	NR	rs4608000-?	NR	3E-6		8.081	[4.82-11.34] unit decrease	Illumina [498648]	N
1420	chr10	109521749	109521750	rs4440965	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	10q25.1	NR	rs4440965-G	0.4303	3E-6		0.1443	[0.084-0.205] unit increase	Illumina [10677593] (imputed)	N
1420	chr10	109533751	109533752	rs4285805	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q25.1	NR	rs4285805-?	NR	3E-6	(Latino)	0.2418	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1420	chr10	109544592	109544593	rs114976007	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	10q25.1	intergenic	rs114976007-G	0.939	6E-6		1.5873016	[1.39-1.78]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1420	chr10	109569849	109569850	rs12570947	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	10q25.1	NR	rs12570947-?	NR	4E-6		1.45	[NR]	Illumina [NR] (imputed)	N
1420	chr10	109575093	109575094	rs10509852	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	White matter microstructure in first episode schizophrenia (left posterior cingulate cortex)	93 Han Chinese cases, 134 Han Chinese controls	NA	10q25.1	SORCS1	rs10509852-?	NR	5E-8		0.04	unit decrease	Illumina [6055918] (imputed)	N
1420	chr10	109575093	109575094	rs10509852	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	Abnormal white matter microstructure in first episode schizophrenia (multivariate analysis)	93 Han Chinese cases, 134 Han Chinese controls	NA	10q25.1	SORCS1	rs10509852-?	NR	2E-7				Illumina [6055918] (imputed)	N
1421	chr10	109586575	109586576	rs148502998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unruptured cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 91 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	10q25.1		rs148502998-T	NR	3E-8		3.373	[2.18-4.56] unit increase	Affymetrix, Illumina [25841390] (imputed)	N
1421	chr10	109586575	109586576	rs148502998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	10q25.1		rs148502998-T	NR	3E-8		3.373	[2.18-4.56] unit increase	Affymetrix, Illumina [25841674] (imputed)	N
1421	chr10	109626065	109626066	rs1834180	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	10q25.1	intergenic	rs1834180-A	0.68	5E-7		0.097	[0.060-0.134] unit increase	Illumina [~ 2500000] (imputed)	N
1421	chr10	109673105	109673106	rs10884569	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs10884569-?	NR	4E-23				Affymetrix [NR]	N
1421	chr10	109674912	109674913	rs10884570	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	10q25.1		rs10884570-?	NR	4E-6		0.11	[0.063-0.157] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1421	chr10	109676659	109676660	rs112349650	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Blood pressure	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	10q25.1	RP11-215N21.1	rs112349650-?	NR	6E-8	(systolic blood pressure)	0.33	[0.21-0.45] unit decrease	Illumina [14948665] (imputed)	N
1421	chr10	109676659	109676660	rs112349650	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Blood pressure	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	10q25.1	RP11-215N21.1	rs112349650-?	NR	2E-7	(BMI-adjusted systolic blood pressure)	0.32	[0.2-0.44] unit decrease	Illumina [14948665] (imputed)	N
1421	chr10	109690235	109690236	rs73401585	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	10q25.1	LOC101927573, SORCS1	rs73401585-?		3E-6	(Additive)	3.2	[2.0-5.2]	Illumina [5600610] (imputed)	N
1422	chr10	109779480	109779481	rs184338590	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	10q25.1	RP11-215N21.1	rs184338590-?	NR	4E-6				Affymetrix, Illumina [15642250] (imputed)	N
1422	chr10	109816569	109816570	rs74472988	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q25.1		rs74472988-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1423	chr10	109846290	109846291	rs148061827	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	10q25.1	NR	rs148061827-G	NR	1E-6		4.84	z score increase	NR [9015039] (imputed)	N
1423	chr10	109891847	109891848	rs11193907	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10q25.1	NR	rs11193907-A	NR	2E-6	(female)	0.16	[0.093-0.227] unit decrease	Illumina [11133794] (imputed)	N
1423	chr10	109939487	109939488	rs141379001	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: Heavy goods vehicle drivers (UKB data field 22617_8211)	864 European ancestry cases, 112,977 European ancestry controls	NA	10q25.1		rs141379001-C	0.003114	5E-10		3.5	[2.4-4.6] unit increase	NR [11842647] (imputed)	N
1424	chr10	110019888	110019889	rs115233653	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs115233653-C	0.01045	3E-12	(APOE)	0.2598	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr10	110072895	110072896	rs375800732	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	10q25.1		rs375800732-C	0.1258	6E-6		1.602	[1.306-1.964]	Affymetrix [7975321] (imputed)	N
1424	chr10	110098286	110098288	rs111235459	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	10q25.1	NR	rs111235459-?	NR	3E-6		0.1047	[0.061-0.148] unit increase	Illumina [at least 560000] (imputed)	N
1426	chr10	110355361	110355362	rs11194188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	ADD3	rs11194188-?	NR	5E-6	(3-hydroxyanthranilic acid)	5.5981274	[3.19-8] unit increase	Affymetrix [at least 2500000] (imputed)	N
1427	chr10	110441148	110441149	rs7914735	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris heterochromicity	377 East Asian ancestry individuals	NA	10q25.1	intergenic	rs7914735-T	0.536842	3E-6		0.356	[0.21-0.5] unit decrease	Illumina [at least 520076] (imputed)	N
1428	chr10	110497100	110497101	rs7906104	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	10q25.1	NR	rs7906104-T	0.253	1E-13		0.017513618	[0.013-0.022] unit decrease	Affymetrix [10613246] (imputed)	N
1428	chr10	110497100	110497101	rs7906104	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	10q25.1	intergenic	rs7906104-T	0.271	3E-9		5.98	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
1428	chr10	110507805	110507806	rs7074871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	10q25.1	NR	rs7074871-A	0.255	2E-8		0.00939985	[0.0061-0.0127] unit decrease	NR [~ 10000000] (imputed)	N
1428	chr10	110518651	110518652	rs7893734	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	10q25.1	NR	rs7893734-T	0.242	7E-12		0.013765078	[0.0098-0.0177] unit decrease	Affymetrix [NR] (imputed)	N
1428	chr10	110537833	110537834	rs56722963	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	10q25.1	NR	rs56722963-T	0.2551	2E-10		6.374	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1428	chr10	110545081	110545082	rs12572486	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	10q25.1	NR	rs12572486-C	0.259	9E-10		0.00925838	[0.0063-0.0122] unit decrease	NR [~ 9732723] (imputed)	N
1428	chr10	110565867	110565868	rs7073987	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	10q25.1	NR	rs7073987-T	0.2587	7E-9		5.791	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1428	chr10	110572258	110572259	rs1577857	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	10q25.1	RNU6-53P	rs1577857-?	NR	4E-8	(EA)	0.05391	NR unit increase	Affymetrix [up to 6007810] (imputed)	N
1428	chr10	110572258	110572259	rs1577857	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	10q25.1	RNU6-53P	rs1577857-?	NR	4E-8		5.484	NR z score increase	Affymetrix [up to 6007810] (imputed)	N
1428	chr10	110581819	110581820	rs12253522	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	ADD3	rs12253522-?	NR	7E-7	(tauro deoxycholate)	0.42141473	[0.25-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
1428	chr10	110581819	110581820	rs12253522	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	ADD3	rs12253522-?	NR	4E-6	(glycocholate)	0.39419547	[0.23-0.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
1430	chr10	110755858	110755859	rs142488468	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	10q25.1	XPNPEP1	rs142488468-C	0.1816	2E-9		0.017358616	[0.012-0.023] unit decrease	Affymetrix [11514936] (imputed)	N
1430	chr10	110766642	110766643	rs34806762	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	10q25.1	NR	rs34806762-T	0.128	2E-8		5.596	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1430	chr10	110823082	110823083	rs17125651	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	10q25.1	intergenic	rs17125651-C	0.134	8E-9	(EA)	1.074	[1.05-1.1]	Affymetrix [up to 12500000] (imputed)	N
1430	chr10	110882067	110882068	rs60726488	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs60726488-T	0.2561	2E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1430	chr10	110882067	110882068	rs60726488	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs60726488-T	0.2561	2E-8	(MTAG)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1431	chr10	110946058	110946059	rs180819375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	10q25.1	NR	rs180819375-?	NR	9E-6		0.2184	[0.12-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
1431	chr10	110971434	110971435	rs17783561	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q25.1	NR	rs17783561-T	0.135585937974119	6E-6	(IGP56)	0.2748	[0.16-0.39] unit decrease	Illumina [~ 2500000] (imputed)	N
1431	chr10	110976228	110976229	rs17711027	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.1	ADD3	rs17711027-?	NR	3E-6	(tauro deoxycholate)	0.3322718	[0.19-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
1432	chr10	111087049	111087050	rs74789601	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia	1,458 European ancestry individuals	787 individuals	10q25.1	NR	rs74789601-T	NR	3E-6		4.8	[2.84-6.76] unit increase	Illumina [> 9000000] (imputed)	N
1433	chr10	111258133	111258134	rs7899270	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs7899270-A	0.6524	2E-8		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1433	chr10	111258133	111258134	rs7899270	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs7899270-A	0.6524	2E-8	(MTAG)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1434	chr10	111296289	111296290	rs34704559	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	10q25.1	intergenic	rs34704559-G	0.8786	2E-6	(Ordinal)	0.435	[0.26-0.61] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1434	chr10	111335860	111335861	rs11816901	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	10q25.1	intergenic	rs11816901-A	0.21	4E-6		0.3	[0.16-0.44] unit increase	Illumina [at least 4710000] (imputed)	N
1434	chr10	111351992	111351993	rs61881849	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.1	NR	rs61881849-A	0.02265	1E-8	(PRPS2)	0.1011	NR unit increase	Illumina [1671387] (imputed)	N
1435	chr10	111434340	111434341	rs11194787	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	10q25.1	LOC100132843	rs11194787-?	NR	3E-7				Illumina [1940243] (imputed)	N
1436	chr10	111635211	111635212	rs3818285	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Superior crus of antihelix expression	4,919 Latin American individuals	NA	10q25.1	NR	rs3818285-?	NR	9E-7	(FDR adjusted)			Illumina [671038]	N
1436	chr10	111648658	111648659	rs2273738	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	10q25.1	ADD3	rs2273738-C	0.865	2E-11		0.91238	[0.89-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1436	chr10	111648658	111648659	rs2273738	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	10q25.1	NR	rs2273738-C	0.869	5E-10		0.90357	[0.87-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1437	chr10	111681410	111681411	rs2084607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	10q25.1	NR	rs2084607-C	0.249878	3E-10		0.014581	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1437	chr10	111694695	111694696	rs17126883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q25.1		rs17126883-C	NR	3E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1437	chr10	111702046	111702047	rs72828224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.1	Intergenic	rs72828224-A	0.8393	5E-10	(MTAG)	0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1437	chr10	111711821	111711822	rs9787456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.1	NR	rs9787456-G	0.26809	4E-13				Affymetrix, Illumina [21126107] (imputed)	N
1437	chr10	111734664	111734665	rs7067604	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q25.1		rs7067604-A	0.14	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
1437	chr10	111734664	111734665	rs7067604	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q25.1		rs7067604-A	0.14	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
1437	chr10	111734664	111734665	rs7067604	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q25.1	NR	rs7067604-A	0.1313	6E-11				NR [9056863] (imputed)	N
1437	chr10	111735749	111735750	rs17095355	20460270	Garcia-Barcelo MM	2010-05-11	Hum Mol Genet	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	10q25.1	XPNPEP1, ADD3	rs17095355-T	0.409	7E-9		1.77	[1.38-2.26]	Affymetrix [289118]	N
1437	chr10	111750715	111750716	rs3862005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.1	NR	rs3862005-T	0.2624	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1437	chr10	111750763	111750764	rs3862006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q25.1		rs3862006-A	0.147944	8E-9		0.01804689	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr10	111750763	111750764	rs3862006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q25.1		rs3862006-A	0.147937	2E-12		0.02205301	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr10	111750850	111750851	rs2419313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.1	NR	rs2419313-A	0.188556	6E-12				Affymetrix, Illumina [19872809] (imputed)	N
1437	chr10	111750850	111750851	rs2419313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q25.1	NR	rs2419313-A	0.142533	5E-13		0.020727	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1437	chr10	111750959	111750960	rs72828247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q25.1	NR	rs72828247-T	0.134766	8E-12		0.019103	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1437	chr10	111764785	111764786	rs12572168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q25.1		rs12572168-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1437	chr10	111770012	111770013	rs12571549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs12571549-A	0.1368	1E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1437	chr10	111770012	111770013	rs12571549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.1	Intergenic	rs12571549-A	0.1368	9E-14	(MTAG)	0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1437	chr10	111773422	111773423	rs2060675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q25.1		rs2060675-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1437	chr10	111774806	111774807	rs10884920	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	10q25.1	ADD3, LOC100505933, XPNPEP1	rs10884920-?	NR	3E-8		1.12		Affymetrix, Illumina [8837380] (imputed)	N
1438	chr10	111804553	111804554	rs61881617	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q25.1		rs61881617-?	NR	4E-6		1.1514	[1.09-1.21]	NR [682398]	N
1438	chr10	111835690	111835691	rs72828283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.1		rs72828283-T	0.0898	8E-10	(conditional-joint)	0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1438	chr10	111850502	111850503	rs2501574	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.1	NR	rs2501574-?	NR	5E-29				Affymetrix [NR]	N
1438	chr10	111855438	111855439	rs2501571	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q25.1	XPNPEP1, ADD3, MXI1, SMNDC1	rs2501571-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
1438	chr10	111855438	111855439	rs2501571	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.1	NR	rs2501571-G	0.814	1E-9		0.00888111	[0.006-0.0117] unit decrease	NR [9732723] (imputed)	N
1438	chr10	111872174	111872175	rs12261598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10q25.2		rs12261598-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1438	chr10	111889778	111889779	rs11194997	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	10q25.2	ADD3	rs11194997-G	0.808408	3E-11				Affymetrix, Illumina [NR] (imputed)	N
1438	chr10	111889778	111889779	rs11194997	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	10q25.2	MXI1	rs11194997-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1438	chr10	111910455	111910456	rs12572991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q25.2		rs12572991-A	NR	4E-8		0.0144	[0.0093-0.0195] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1438	chr10	111930047	111930048	rs12268290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q25.2		rs12268290-G	NR	4E-8		0.0215	[0.014-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1439	chr10	111935549	111935550	rs72830427	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	10q25.2	NR	rs72830427-?		3E-8				NR [520857]	N
1439	chr10	111935549	111935550	rs72830427	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	10q25.2	NR	rs72830427-?		3E-8				NR [8956949]	N
1439	chr10	111938666	111938667	rs7908043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q25.2		rs7908043-A	NR	6E-15		0.0179	[0.013-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1439	chr10	111946872	111946873	rs79404554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	10q25.2		rs79404554-G	0.342642	2E-11		0.0241629	[0.017-0.031] unit increase	Illumina [13479091] (imputed)	N
1439	chr10	111947274	111947275	rs77652395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	10q25.2	NR	rs77652395-G	0.661201	1E-10		0.02513	[0.017-0.033] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1439	chr10	111947274	111947275	rs77652395	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	10q25.2	ADD3, MXI1	rs77652395-?	NR	7E-10		0.02789	[0.019-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1439	chr10	111947274	111947275	rs77652395	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	10q25.2	ADD3, MXI1	rs77652395-?	NR	4E-8		0.03321	[0.021-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1439	chr10	111965825	111965826	rs111777102	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	10q25.2	MXI1	rs111777102-C	0.9343	2E-9		0.214	[0.14-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1439	chr10	111967554	111967555	rs1475502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.2		rs1475502-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1439	chr10	111969918	111969919	rs113511609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q25.2		rs113511609-T	NR	4E-16		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1439	chr10	111969918	111969919	rs113511609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q25.2	MXI1	rs113511609-T	0.130055	3E-10		0.020818483	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr10	111969918	111969919	rs113511609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q25.2		rs113511609-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1439	chr10	111975933	111975934	rs112904296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q25.2		rs112904296-T	NR	4E-8		0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1439	chr10	111988424	111988425	rs3838773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q25.2		rs3838773-T	NR	1E-12		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1439	chr10	111988424	111988425	rs3838773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q25.2		rs3838773-T	NR	1E-13		0.0213	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1439	chr10	111992221	111992222	rs17127170	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	10q25.2	MXI1	rs17127170-?	NR	4E-8		0.02566	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1439	chr10	111992623	111992624	rs12416343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	10q25.2		rs12416343-C	0.283778	1E-11		0.024894	[0.018-0.032] unit decrease	Illumina [13478928] (imputed)	N
1439	chr10	111995451	111995452	rs76863268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q25.2	MXI1	rs76863268-A	0.343664	3E-11		0.015529472	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr10	111995455	111995456	rs74440003	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	10q25.2	NR	rs74440003-A	0.26106300000000005	1E-8		0.00843383	[0.0055-0.0113] unit increase	Affymetrix [16578495] (imputed)	N
1439	chr10	112006485	112006486	rs716595	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	10q25.2	MXI1	rs716595-?	0.08	8E-6			[NR]	Illumina [551642]	N
1439	chr10	112008630	112008631	rs72830456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q25.2	NR	rs72830456-A	NR	3E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr10	112008630	112008631	rs72830456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q25.2	NR	rs72830456-A	NR	3E-9		0.0284	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr10	112020254	112020254	rs560337143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q25.2		rs560337143-GAC	NR	2E-9		0.0278	[0.019-0.037] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1439	chr10	112026081	112026082	rs1967840	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q25.2	MXI1	rs1967840-A	0.824904	4E-8		0.018622	[0.012-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1439	chr10	112027655	112027656	rs3793889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs3793889-G	0.118334	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1439	chr10	112029404	112029405	rs10509912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs10509912-A	0.168296	9E-18				Affymetrix, Illumina [24649327] (imputed)	N
1439	chr10	112029404	112029405	rs10509912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q25.2	NR	rs10509912-A	0.136149	7E-14		0.020124	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1439	chr10	112029404	112029405	rs10509912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs10509912-A	0.155589	1E-15				Affymetrix, Illumina [23114412] (imputed)	N
1439	chr10	112029404	112029405	rs10509912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q25.2	NR	rs10509912-A	0.134894	7E-14		0.021052	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1439	chr10	112032957	112032958	rs2419316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	10q25.2		rs2419316-G	0.388184	2E-10		0.0309998	[0.021-0.041] unit decrease	Illumina [13467171] (imputed)	N
1439	chr10	112034589	112034590	rs67762893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs67762893-G	0.187674	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
1439	chr10	112034589	112034590	rs67762893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q25.2	NR	rs67762893-G	0.100031	9E-11		0.02082	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1439	chr10	112036974	112036975	rs11195062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q25.2		rs11195062-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1439	chr10	112036974	112036975	rs11195062	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	10q25.2	NR	rs11195062-A		3E-6		1.132	[NR]	Illumina [414804]	N
1439	chr10	112041578	112041579	rs2855469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q25.2		rs2855469-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1440	chr10	112097072	112097073	rs963059	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.2	intergenic	rs963059-T	0.7967	4E-8		0.0167	[0.011-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1440	chr10	112186147	112186148	rs11195128	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q25.2	Intergenic	rs11195128-?		3E-9				Illumina [9725440] (imputed)	N
1440	chr10	112186147	112186148	rs11195128	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q25.2	Intergenic	rs11195128-?		5E-11				Illumina [9560910] (imputed)	N
1440	chr10	112186147	112186148	rs11195128	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	10q25.2	SMNDC1, DUSP5, RP11-525A16.1	rs11195128-T	0.152	2E-10		1.42	[1.28-1.58]	Illumina [5664371] (imputed)	N
1441	chr10	112220828	112220829	rs10787239	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	10q25.2		rs10787239-?	NR	1E-5				Illumina [7401356] (imputed)	N
1441	chr10	112242949	112242950	rs11195154	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q25.2	DUSP5	rs11195154-T	0.82639	1E-19		0.0221299	[0.017-0.027] unit decrease	NR [13737936] (imputed)	N
1441	chr10	112242949	112242950	rs11195154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q25.2		rs11195154-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1441	chr10	112242949	112242950	rs11195154	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q25.2		rs11195154-?	NR	1E-15		0.0220353	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1441	chr10	112245399	112245400	rs73349318	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q25.2	DUSP5	rs73349318-A	0.8738	3E-8		0.0472	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1441	chr10	112255893	112255894	rs10884984	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	10q25.2	NR	rs10884984-T	0.2313	5E-6		0.1631	[0.094-0.233] unit decrease	Illumina [10677593] (imputed)	N
1441	chr10	112268800	112268801	rs17127481	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	10q25.2	DUSP5	rs17127481-?	NR	1E-8		0.02632	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1441	chr10	112316955	112316956	rs7090886	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	10q25.2	SMC3, DUSP5	rs7090886-A	0.86	7E-7		0.086	[0.053-0.119] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
1442	chr10	112388856	112388857	rs11195238	31982041	Guillen-Guio B	2020-01-23	Lancet Respir Med	Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study.	Acute respiratory distress syndrome in sepsis	274 European ancestry cases, 316 European ancestry controls	359 European ancestry cases, 986 European ancestry controls	10q25.2	SMC3, RBM20	rs11195238-C	0.87	4E-8		1.6666665	[1.35-2.08]	Affymetrix [7984208] (imputed)	N
1442	chr10	112445710	112445711	rs10787268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q25.2		rs10787268-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1443	chr10	112459905	112459906	rs10787270	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs10787270-G	0.44561	8E-10	(-16 ms)	0.033878	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112459905	112459906	rs10787270	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs10787270-G	0.44561	5E-9	(-22 ms)	0.0320951	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112459905	112459906	rs10787270	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs10787270-G	0.44561	4E-11	(-20 ms)	0.0357002	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112491619	112491620	rs2419577	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q25.2	NR	rs2419577-?	NR	5E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1443	chr10	112536916	112536917	rs7922020	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.2	SMC3	rs7922020-?	NR	1E-6	(uridine)	0.26310885	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1443	chr10	112562517	112562518	rs75497793	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q25.2	RBM20	rs75497793-T	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1443	chr10	112562517	112562518	rs75497793	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	10q25.2	RBM20	rs75497793-T	NR	3E-6				Illumina [up to 11995908] (imputed)	N
1443	chr10	112570551	112570552	rs34038942	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		RBM20	rs34038942-?	NR	1E-6		1.81	[NR] unit increase	Affymetrix [NR] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	5E-23	(-18 ms)	0.0839745	[0.067-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	4E-21	(-20 ms)	0.0824458	[0.065-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	4E-21	(-16 ms)	0.0813704	[0.064-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	3E-12	(-12 ms)	0.0612023	[0.044-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	2E-18	(-22 ms)	0.0751235	[0.058-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112573688	112573688	rs770537744	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	RBM20	rs770537744-CAG	0.885477	2E-17	(-14 ms)	0.0736821	[0.056-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1443	chr10	112576558	112576559	rs12573386	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	10q25.2		rs12573386-C	0.63	5E-9		1.16		NR [NR] (imputed)	N
1443	chr10	112576694	112576695	rs10749053	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	10q25.2	RBM20	rs10749053-T	0.158	1E-8		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1443	chr10	112576694	112576695	rs10749053	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	10q25.2	RBM20	rs10749053-T	0.15	2E-7		1.06	[1.03-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1444	chr10	112594704	112594705	rs117230900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs117230900-C	0.01045	2E-9	(SERPINF1)	0.02702	NR unit increase	Illumina [1671387] (imputed)	N
1444	chr10	112631255	112631256	rs118107800	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	10q25.2	NR	rs118107800-?	NR	1E-6		0.0408	[0.024-0.057] unit increase	Illumina [~ 7800000] (imputed)	N
1444	chr10	112643036	112643037	rs11195365	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10q25.2	NR	rs11195365-G	NR	2E-6	(GEE model)	0.67448	[0.4-0.95] unit decrease	NR [NR] (imputed)	N
1444	chr10	112647194	112647195	rs10787287	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q25.2	NR	rs10787287-C	0.2411	7E-11		0.036	[0.025-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1444	chr10	112664113	112664114	rs58164562	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	10q25.2	BBIP1	rs58164562-T	0.748	3E-12		0.892	[0.86-0.92]	Illumina [11270530] (imputed)	N
1444	chr10	112667505	112667506	rs117419791	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs117419791-A	0.01045	1E-8	(PRPS1)	0.03813	NR unit increase	Illumina [1671387] (imputed)	N
1444	chr10	112678656	112678657	rs7895872	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q25.2	NR	rs7895872-G	0.3225	1E-13		0.0306	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1444	chr10	112678656	112678657	rs7895872	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q25.2	BBIP1	rs7895872-T	0.579	1E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1444	chr10	112704379	112704380	rs1359849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	10q25.2		rs1359849-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1444	chr10	112716654	112716655	rs7101075	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10q25.2	PDCD4, BBIP1, SHOC2, ADRA2A	rs7101075-?	NR	4E-8	(female)	0.021253	[0.014-0.029] unit increase	Affymetrix [25921788] (imputed)	N
1445	chr10	112756090	112756091	rs76053346	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	10q25.2	NR	rs76053346-?	NR	3E-7		0.0431	[0.027-0.06] unit increase	Illumina [~ 7800000] (imputed)	N
1445	chr10	112774154	112774155	rs1410054	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	10q25.2	PDCD4, BBIP1, SHOC2, ADRA2A	rs1410054-?	NR	3E-10		0.0179461	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1445	chr10	112806110	112806111	rs4918617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q25.2		rs4918617-G	0.704354	1E-9		0.014702439	[0.0099-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1446	chr10	112877800	112877801	rs2065779	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	10q25.2	RP11-479A21.1	rs2065779-?	0.93	3E-6		1.82	[1.41-2.33]	Illumina [2380486] (imputed)	N
1446	chr10	112909104	112909105	rs869244	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q25.2	ADRA2A	rs869244-A	0.331	1E-7	(ephinephrine low 2)	0.135	[0.086-0.184] unit decrease	Illumina [129094]	N
1446	chr10	112909104	112909105	rs869244	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q25.2	ADRA2A	rs869244-A	0.33	3E-6	(ephinephrine high 2)	0.12	[0.071-0.169] unit decrease	Illumina [129094]	N
1446	chr10	112909104	112909105	rs869244	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	10q25.2	ADRA2A	rs869244-A	0.353	3E-12	(epinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1446	chr10	112918556	112918557	rs78709418	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs78709418-G	0.01394	2E-8	(ATL3)	0.01365	NR unit increase	Illumina [1671387] (imputed)	N
1446	chr10	112921955	112921956	rs145183937	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs145183937-G	0.0122	4E-10	(CNN2)	0.01961	NR unit increase	Illumina [1671387] (imputed)	N
1446	chr10	112921955	112921956	rs145183937	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs145183937-G	0.0122	1E-8	(SEPT7)	0.06729	NR unit increase	Illumina [1671387] (imputed)	N
1446	chr10	112922408	112922409	rs4545476	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	10q25.2	ADRA2A	rs4545476-T	0.375	1E-8	(ephinephrine low 1)	0.144	[0.095-0.193] unit decrease	Illumina [129094]	N
1446	chr10	112977007	112977008	rs118137427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs118137427-G	NR	4E-24		0.0573	[0.046-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr10	113016227	113016228	rs12257178	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	10q25.2	ADRA2A	rs12257178-A	0.39	5E-7	(trajectory)	5.04	z-score decrease	Illumina [866099] (imputed)	N
1447	chr10	113017401	113017402	rs12775580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	10q25.2		rs12775580-C	0.910205	1E-8		0.0407977	[0.027-0.055] unit increase	NR [11722792] (imputed)	N
1447	chr10	113017406	113017407	rs12244654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10q25.2		rs12244654-T	NR	1E-33		0.0525	[0.044-0.061] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1447	chr10	113036353	113036354	rs12784552	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	10q25.2	ADRA2A	rs12784552-A	0.9098	3E-31		0.0329	[0.027-0.039] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	10q25.2	ADRA2A	rs10885122-G	0.862468	1E-10		0.0288	[0.02-0.038] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	10q25.2	ADRA2A	rs10885122-G	0.862468	4E-7		0.024116	[0.015-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	10q25.2	ADRA2A	rs10885122-G	0.862468	7E-18		0.027256	[0.021-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	10q25.2	GATA3, CELF2	rs10885122-?	NR	3E-11				NR [NR]	N
1447	chr10	113042092	113042093	rs10885122	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	ADRA2A	rs10885122-T	0.1142	9E-8		2.0E-4	[-0.00184-0.00224] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	ADRA2A	rs10885122-T	0.1168	2E-7		0.0255	[0.016-0.035] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	10q25.2	ADRA2A	rs10885122-G	0.87	2E-6		0.01	[0.0002-0.0198] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1447	chr10	113042092	113042093	rs10885122	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	10q25.2	ADRA2A	rs10885122-G	0.87	3E-16		0.022	[0.014-0.03] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1447	chr10	113046378	113046379	rs11195508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q25.2		rs11195508-G	NR	4E-8		0.0177	[0.011-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1447	chr10	113046378	113046379	rs11195508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs11195508-G	NR	8E-10		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr10	113048320	113048321	rs10885123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs10885123-T	NR	2E-27		0.0385	[0.031-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr10	113074199	113074200	rs4917601	30160337	Asleh R	2018-08-30	Clin Transplant	Genome Wide Association Study Reveals Novel Genetic Loci Associated With Change in Renal Function in Heart Transplant Recipients.	Glomerular filtration rate change in heart transplantation	243 European ancestry individuals, 1 American Indian ancestry individual, 7 individuals	NA	10q25.2	LOC100420392	rs4917601-T	0.15	6E-7		11.64	[7.17-16.11] unit increase	Illumina [314903] (imputed)	N
1449	chr10	113269908	113269909	rs113817682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs113817682-G	0.0122	6E-11	(EHHADH)	2.294	NR unit increase	Illumina [1671387] (imputed)	N
1449	chr10	113269908	113269909	rs113817682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs113817682-G	0.0122	3E-9	(HSD17B4)	1.832	NR unit increase	Illumina [1671387] (imputed)	N
1449	chr10	113269908	113269909	rs113817682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs113817682-G	0.0122	2E-8	(PIPOX)	0.4027	NR unit increase	Illumina [1671387] (imputed)	N
1449	chr10	113287673	113287674	rs11195620	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	10q25.2		rs11195620-T	0.4284	6E-6		0.7	[0.6-0.82]	Illumina [248101]	N
1449	chr10	113287673	113287674	rs11195620	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	10q25.2	intergenic	rs11195620-C	0.277	2E-6				Illumina [4873750] (imputed)	N
1449	chr10	113310786	113310787	rs2138554	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	10q25.2		rs2138554-T	0.3452	5E-6		0.69	[0.59-0.81]	Illumina [248101]	N
1449	chr10	113312429	113312430	rs4918665	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10q25.2		rs4918665-?	NR	7E-6	(serous)	1.24		Illumina [11595112] (imputed)	N
1451	chr10	113543583	113543584	rs181275126	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	10q25.2	GPAM	rs181275126-A	0.0072	2E-8	(C7-DC)	0.4397	[0.28-0.6] unit increase	Illumina [~ 47000000] (imputed)	N
1452	chr10	113766613	113766614	rs113054644	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	10q25.2	GPAM	rs113054644-A	0.0106	5E-6		0.2712	[0.15-0.39] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1453	chr10	113810428	113810429	rs150400940	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q25.2	NR	rs150400940-?	NR	7E-7		0.3888	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1453	chr10	113893686	113893687	rs117498629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	10q25.2	NR	rs117498629-A	NR	6E-10		0.0345	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr10	113893686	113893687	rs117498629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	10q25.2	NR	rs117498629-A	NR	8E-12		0.0383	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr10	113893686	113893687	rs117498629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q25.2	NR	rs117498629-A	NR	8E-11		0.0347	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr10	113902826	113902827	rs2803606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q25.2	NR	rs2803606-T	0.246139	1E-9		0.015589413	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr10	113902826	113902827	rs2803606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q25.2		rs2803606-T	0.246184	7E-10		0.015831053	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q25.2		rs1129555-G	0.775307	2E-8		0.0134564	[0.0087-0.0182] unit increase	Illumina [13479295] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q25.2	GPAM	rs1129555-?	NR	3E-7		0.01740517	[0.011-0.024] unit increase	Illumina [27896057] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	10q25.2	NR	rs1129555-?	NR	7E-8		2.038163	[1.3-2.78] unit decrease	Illumina [32003504] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	10q25.2	NR	rs1129555-?	NR	1E-7		0.6446611	[0.41-0.88] unit decrease	Illumina [31978362] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	NR	2E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	0.3	9E-6	(EA)	0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	NR	3E-19		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	0.3	5E-19	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	NR	2E-18		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	0.3	3E-19	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	NR	5E-17		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs1129555-A	0.3	7E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	10q25.2	GPAM	rs1129555-A	0.323	2E-18	(Trans-ethnic initial)	0.0317	[0.024-0.039] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	10q25.2	GPAM	rs1129555-A	0.323	1E-15	(Trans-ethnic initial)	0.0303	[0.022-0.038] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1454	chr10	113910720	113910721	rs1129555	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	10q25.2	GPAM	rs1129555-A	0.27	5E-7		0.035	[0.021-0.049] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	10q25.2		rs2297991-T	0.281369	2E-10		0.0291564	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q25.2		rs2297991-C	NR	4E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	10q25.2		rs2297991-?	NR	2E-8		0.0127547	[0.0083-0.0172] unit decrease	NR [6912294] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	10q25.2	NR	rs2297991-?	NR	1E-6		1.803868	[1.08-2.53] unit decrease	Illumina [32003504] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	NR	2E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	0.305	7E-6	(EA)	0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	NR	8E-19		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	0.305	3E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	NR	5E-18		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	0.305	3E-18	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	NR	1E-16		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2297991-T	0.305	4E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	10q25.2	NR	rs2297991-?	NR	2E-8		0.02614	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1454	chr10	113913221	113913222	rs2297991	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	10q25.2	GPAM	rs2297991-T	0.28	8E-10		0.042	[0.028-0.056] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1454	chr10	113913551	113913552	rs1807800	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q25.2		rs1807800-A	0.280697	1E-21		0.0441259	[0.035-0.053] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113913551	113913552	rs1807800	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q25.2	GPAM	rs1807800-?		1E-14		0.031	[0.023-0.039] unit decrease	Illumina [31500000] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	6E-15		0.033178	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	1E-21		0.0396769	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269158	2E-10		0.0277746	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	2E-10		0.0291539	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	8E-15		0.0330562	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	2E-22		0.040427	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269158	1E-10		0.0270266	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	4E-22		0.0401156	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	9E-15		0.0329918	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	1E-20		0.0386737	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	8E-15		0.0329594	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	7E-19		0.0370754	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	4E-15		0.0335175	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	1E-19		0.0378599	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	10q25.2		rs5787948-C	0.269179	1E-17		0.0358366	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q25.2	NR	rs5787948-C	0.266706	2E-8		0.0179379	[0.011-0.025] unit increase	Affymetrix [16577313] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q25.2	NR	rs5787948-C	0.266764	2E-14		0.00728579	[0.0054-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
1454	chr10	113915574	113915574	rs5787948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q25.2	NR	rs5787948-C	0.266764	9E-18		0.00891318	[0.0068-0.011] unit increase	Affymetrix [16582965] (imputed)	N
1454	chr10	113917084	113917085	rs2254537	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	10q25.2	NR	rs2254537-A	0.7098	2E-16				Affymetrix, Illumina [at least 2500000] (imputed)	N
1454	chr10	113917832	113917833	rs6585139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs6585139-C	0.730192	3E-11				Affymetrix, Illumina [24649327] (imputed)	N
1454	chr10	113921353	113921354	rs2250802	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q25.2	GPAM	rs2250802-G	0.275657	6E-15		0.0182094	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	4E-15		0.0343205	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	8E-16		0.0358031	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	3E-23		0.0409777	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-9		0.0268928	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	6E-14		0.0333645	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-17		0.036789	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	10q25.2		rs2792735-G	0.279628	3E-16		0.0352837	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-12		0.0316805	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	10q25.2		rs2792735-G	0.279628	1E-17		0.0367963	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-11		0.0300614	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	4E-23		0.0411117	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	10q25.2		rs2792735-G	0.279628	5E-15		0.0340459	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	10q25.2		rs2792735-G	0.279628	1E-16		0.0355502	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-22		0.0400779	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-22		0.0398204	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-8		0.0252039	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-22		0.0409963	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	6E-11		0.0295853	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	4E-16		0.036182	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	5E-25		0.0420859	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-20		0.0392335	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	3E-10		0.0286565	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-17		0.0365904	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-12		0.0314089	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-18		0.0375175	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	7E-20		0.0405657	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	3E-21		0.0391151	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	7E-10		0.0274591	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	1E-19		0.0383863	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	5E-19		0.0396353	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	10q25.2		rs2792735-G	0.27966	2E-21		0.0399626	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q25.2	GPAM	rs2792735-?	NR	6E-19		0.0254	[0.02-0.03] unit increase	Affymetrix [5701386] (imputed)	N
1454	chr10	113921824	113921825	rs2792735	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.2	GPAM	rs2792735-A	0.7206	6E-21		0.0306	[0.024-0.037] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1454	chr10	113931689	113931690	rs2792703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792703-C	0.280835	3E-9		0.0259683	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1454	chr10	113931689	113931690	rs2792703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792703-C	0.280835	3E-19		0.0382212	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1454	chr10	113931689	113931690	rs2792703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q25.2		rs2792703-C	0.280803	4E-16		0.0368602	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1454	chr10	113931689	113931690	rs2792703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	10q25.2		rs2792703-C	0.280835	1E-18		0.037794	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1454	chr10	113931689	113931690	rs2792703	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q25.2	GPAM	rs2792703-?		2E-11		0.032	[0.023-0.041] unit increase	Illumina [31500000] (imputed)	N
1454	chr10	113932843	113932844	rs35116854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	10q25.2	NR	rs35116854-C	NR	5E-11		0.037	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr10	113932843	113932844	rs35116854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	10q25.2	NR	rs35116854-C	NR	3E-12		0.0393	[0.028-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr10	113933006	113933008	rs77987196	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.2	GPAM	rs77987196-?	0.7101	1E-12		0.0207	[0.015-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1454	chr10	113933006	113933008	rs77987196	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.2	GPAM	rs77987196-?	0.7101	2E-18		0.0254	[0.02-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1454	chr10	113933008	113933010	rs398054733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q25.2		rs398054733-A	NR	4E-14		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1454	chr10	113933008	113933010	rs398054733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	10q25.2		rs398054733-A	0.774594	1E-11		0.0315557	[0.022-0.041] unit decrease	Illumina [13474352] (imputed)	N
1454	chr10	113933008	113933009	rs5024318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q25.2		rs5024318-A	NR	1E-10		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	10q25.2	NR	rs2255141-?	NR	6E-7		2.138958	[1.3-2.98] unit decrease	Illumina [32003504] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	10q25.2	NR	rs2255141-?	NR	5E-7		0.6873297	[0.42-0.96] unit decrease	Illumina [31978362] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	10q25.2		rs2255141-A	0.2689	3E-7		0.0064	[0.0039-0.0089] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	NR	1E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	NR	3E-20		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	0.298	1E-19	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	NR	1E-19		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	0.298	8E-20	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	NR	4E-17		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2255141-A	0.298	5E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	10q25.2	GPAM	rs2255141-A	0.30	1E-13		0.03	[NR] unit increase	NR [NR] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	10q25.2	GPAM	rs2255141-A	0.3	7E-16		0.031	[NR] unit increase	NR [NR] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	10q25.2	GPAM	rs2255141-A	0.29	2E-9		1.08	[0.69-1.47] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1454	chr10	113933885	113933886	rs2255141	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	10q25.2	GPAM	rs2255141-A	0.3	2E-10		1.14	[0.75-1.53] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	6E-19		0.0388311	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	3E-8		0.0248417	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	3E-9		0.0260671	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	1E-8		0.0248955	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	8E-9		0.0258923	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	1E-17		0.0378531	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275615	4E-11		0.0282601	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275615	9E-10		0.0270958	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	6E-10		0.027193	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	2E-11		0.0296363	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	1E-19		0.039834	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	2E-25		0.0450586	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	4E-26		0.0475019	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	4E-23		0.0432336	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	2E-8		0.0244427	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1454	chr10	113934383	113934384	rs2803619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	10q25.2		rs2803619-G	0.275645	1E-24		0.0460544	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
1454	chr10	113935378	113935379	rs10787428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q25.2	NR	rs10787428-C	0.606419	4E-12		0.013119	[0.0094-0.0168] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1454	chr10	113936243	113936244	rs2255400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	10q25.2		rs2255400-A	0.27631	3E-24		0.0456702	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113936243	113936244	rs2255400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	10q25.2		rs2255400-A	0.276313	4E-9		0.0270253	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113937940	113937941	rs2487294	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q25.2	GPAM	rs2487294-G	0.27652	2E-16		0.0183644	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1454	chr10	113938285	113938286	rs4917627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q25.2		rs4917627-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	NR	1E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	NR	3E-20		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	0.298	2E-19	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	NR	1E-19		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	0.298	2E-19	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	NR	1E-16		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113939583	113939584	rs2803621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs2803621-G	0.298	7E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113940328	113940329	rs2792751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q25.2		rs2792751-C	NR	4E-17		0.0193	[0.015-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1454	chr10	113940328	113940329	rs2792751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q25.2		rs2792751-C	NR	1E-53		0.0359	[0.031-0.04] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1454	chr10	113940328	113940329	rs2792751	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q25.2	GPAM	rs2792751-T	0.274966	3E-64		0.0361015	[0.032-0.04] unit increase	Affymetrix [NR] (imputed)	N
1454	chr10	113940328	113940329	rs2792751	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q25.2	GPAM	rs2792751-T	0.274865	2E-65		0.0375265	[0.033-0.042] unit increase	Affymetrix [NR] (imputed)	N
1454	chr10	113944270	113944271	rs2419604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	10q25.2		rs2419604-A	0.276643	3E-19		0.0410568	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
1454	chr10	113944270	113944271	rs2419604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	10q25.2		rs2419604-G	0.775855	3E-12		0.0282845	[0.02-0.036] unit decrease	Illumina [13478866] (imputed)	N
1454	chr10	113944939	113944940	rs2263608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q25.2	NR	rs2263608-A	0.721469	1E-12		0.015328	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1454	chr10	113947039	113947040	rs4918722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q25.2		rs4918722-T	NR	1E-36		0.0271	[0.023-0.031] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1454	chr10	113947677	113947678	rs4917628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs4917628-G	0.729014	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q25.2		rs10787429-T	0.274425	1E-8		0.0252852	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	10q25.2		rs10787429-T	0.274425	3E-9		0.0262157	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q25.2		rs10787429-T	0.274425	2E-14		0.0329289	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	10q25.2		rs10787429-T	0.274425	2E-14		0.0332211	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q25.2		rs10787429-C	NR	4E-29		0.0252	[0.021-0.03] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q25.2		rs10787429-C	NR	2E-44		0.0322	[0.028-0.037] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	10q25.2	GPAM	rs10787429-?	NR	1E-9		0.0023	[0.0017-0.0029] unit increase	Affymetrix [21347608] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	10q25.2	GPAM	rs10787429-?	NR	3E-33		0.0062	[0.0052-0.0072] unit increase	Affymetrix [21347608] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q25.2	GPAM	rs10787429-T	0.274137	2E-49		0.00374561	[0.0032-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	10q25.2	GPAM	rs10787429-T	0.274142	3E-39		0.00582193	[0.005-0.0067] unit increase	Affymetrix [13995440] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q25.2	GPAM, TECTB	rs10787429-T	0.27	6E-35		12.3	z-score increase	Affymetrix [4311822] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q25.2	GPAM, TECTB	rs10787429-T	0.27	1E-9		6.1	z-score increase	Affymetrix [4314223] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	10q25.2	GPAM, TECTB	rs10787429-T	0.27	1E-30		11.5	z-score increase	Affymetrix [4312306] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs10787429-?		2E-12		0.0298	[0.021-0.038] unit decrease	Illumina [31500000] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q25.2	GPAM	rs10787429-C	0.726397	8E-12		0.017357962	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	10q25.2		rs10787429-?	0.2726	3E-9		0.00945	unit increase	NR [6200000] (imputed)	N
1454	chr10	113949663	113949664	rs10787429	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs10787429-?	NR	2E-9		0.02891	[0.019-0.038] unit decrease	Illumina [6108953] (imputed)	N
1454	chr10	113950257	113950257	rs11446981	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	10q25.2	GPAM	rs11446981-?	NR	4E-13		0.0637	NR % decrease	Affymetrix [9390170] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q25.2		rs7096937-C	NR	6E-18		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs7096937-?		9E-13		0.0352	[0.026-0.045] unit decrease	Illumina [31500000] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q25.2	NR	rs7096937-T	0.268636	1E-12		0.00855283	[0.006-0.0111] unit increase	Affymetrix [16582621] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	10q25.2	NR	rs7096937-T	0.268636	5E-14		0.0094699	[0.0068-0.0122] unit increase	Affymetrix [16582614] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	10q25.2	NR	rs7096937-?	NR	1E-6		1.878979	[1.13-2.63] unit decrease	Illumina [32003504] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	9E-12				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	7E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	6E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	5E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	1E-11				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	4E-6		0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	7E-13				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	7E-14				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	7E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-9		0.958	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	6E-6		0.874	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	3E-27				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	1E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	5E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-32				Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	5E-11	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	3E-7	(Asian)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	2E-19		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	9E-7	(Asian)	0.008318	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	1E-7	(EA)	0.009304	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q25.2	GPAM, TECTB	rs7096937-C	NR	1E-16		0.0089	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	NR	2E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	0.297	7E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	NR	3E-19		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	0.297	5E-19	(EA)	0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	NR	7E-19		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	0.297	2E-19	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	NR	6E-16		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113950417	113950418	rs7096937	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.2	NR	rs7096937-T	0.297	7E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1454	chr10	113977210	113977211	rs12411732	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q25.2	GPAM	rs12411732-G	0.854428	8E-29		0.0305533	[0.025-0.036] unit increase	Affymetrix [NR] (imputed)	N
1454	chr10	113978096	113978097	rs2419605	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q25.2	GPAM	rs2419605-A	0.852204	3E-29		0.0312617	[0.026-0.037] unit increase	Affymetrix [NR] (imputed)	N
1454	chr10	113978498	113978499	rs2419607	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs2419607-?	NR	2E-10		0.02829	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1454	chr10	113978849	113978850	rs12415159	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q25.2	GPAM	rs12415159-A	0.854741	1E-13		0.021016	[0.015-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1454	chr10	113978849	113978850	rs12415159	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q25.2	TECTB	rs12415159-?	NR	1E-13		0.0276	[0.021-0.034] unit increase	Affymetrix [5701386] (imputed)	N
1454	chr10	113983495	113983496	rs10787431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	10q25.2		rs10787431-G	0.411865	3E-11		0.0319767	[0.023-0.041] unit decrease	Illumina [13465896] (imputed)	N
1454	chr10	113985227	113985228	rs7911354	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.2	TECTB	rs7911354-?	NR	4E-6	(SM 24:0)	0.46090597	[0.26-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
1454	chr10	113986839	113986840	rs12413488	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs12413488-?		1E-16		0.0413	[0.031-0.051] unit increase	Illumina [31500000] (imputed)	N
1454	chr10	113987547	113987548	rs4573621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	10q25.2		rs4573621-G	0.274724	8E-12		0.0272205	[0.019-0.035] unit decrease	Illumina [13476599] (imputed)	N
1454	chr10	114019829	114019830	rs4917630	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs4917630-?	NR	8E-13		0.03894	[0.028-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1454	chr10	114025181	114025182	rs57594838	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	10q25.2	GPAM, TECTB	rs57594838-?	NR	6E-10		0.02677	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	1E-11		0.0231	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	9E-11		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	2E-14		0.027	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	4E-9		0.02	[0.013-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	4E-15		0.0279	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1455	chr10	114043370	114043371	rs41313475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	10q25.2	NR	rs41313475-C	NR	2E-10		0.0217	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1455	chr10	114053982	114053983	rs10509957	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	10q25.2	NR	rs10509957-?	NR	4E-8	(a1-Antichymotrypsin)	0.1	[0.08-0.12] unit decrease	Illumina [4020654] (imputed)	N
1455	chr10	114091669	114091670	rs79172158	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q25.2		rs79172158-T	0.924798	8E-9		0.0429789	[0.028-0.058] unit decrease	NR [11722792] (imputed)	N
1455	chr10	114104014	114104015	rs76873953	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	10q25.2		rs76873953-T	0.92143	4E-8		0.0407429	[0.026-0.055] unit increase	NR [11722792] (imputed)	N
1455	chr10	114104014	114104015	rs76873953	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	10q25.2		rs76873953-T	0.92143	5E-8		0.0393163	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
1455	chr10	114111347	114111348	rs943262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.2	Intergenic	rs943262-C	0.5298	3E-15	(MTAG)	0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1455	chr10	114111347	114111348	rs943262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q25.2	Intergenic	rs943262-G	0.4702	5E-11		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1455	chr10	114111659	114111660	rs11195918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q25.2		rs11195918-A	NR	3E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1455	chr10	114112048	114112049	rs12763672	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type) in genotoxic compound exposure	321 European and unknown ancestry cases, 286 European and unknown ancestry controls	NA	10q25.2	ACSL5, ZDHHC6	rs12763672-?	NR	3E-6		1.923077	[1.47-2.56]	Illumina [> 2600000] (imputed)	N
1455	chr10	114124976	114124977	rs74563318	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.2	intergenic	rs74563318-A	0.0311	3E-8		0.0495	[0.032-0.067] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1455	chr10	114138653	114138672	rs561263417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q25.2	ACSL5	rs561263417-T	0.113689	2E-11		0.031236634	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr10	114141102	114141103	rs79671623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q25.2	ACSL5	rs79671623-A	0.11622	3E-10		0.022120545	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr10	114145043	114145044	rs58854276	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs58854276-A	NR	7E-10		0.06	[0.04-0.08] unit increase	Illumina [10461755] (imputed)	N
1455	chr10	114151126	114151126	rs35383388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q25.2	ACSL5	rs35383388-CA	0.759376	3E-18		0.031617183	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr10	114151126	114151126	rs35383388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q25.2	NR	rs35383388-I	0.759156	2E-75		0.044811	[0.04-0.05] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1455	chr10	114151126	114151126	rs35383388	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q25.2	ACSL5	rs35383388-CA	0.7626	1E-24		0.04572568	[0.037-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1455	chr10	114154751	114154752	rs146605626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q25.2	ACSL5	rs146605626-A	0.025894	6E-26		0.076674074	[0.062-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr10	114154751	114154752	rs146605626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q25.2	ACSL5	rs146605626-A	0.0252	1E-11		0.08147689	[0.058-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
1455	chr10	114155585	114155586	rs11195945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs11195945-C	0.886972	4E-69				Affymetrix, Illumina [17210439] (imputed)	N
1456	chr10	114164145	114164146	rs11195949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.2	Intergenic	rs11195949-T	0.4948	3E-16	(MTAG)	0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1456	chr10	114164145	114164146	rs11195949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.2	Intergenic	rs11195949-T	0.4948	2E-13		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1456	chr10	114167215	114167216	rs2419626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs2419626-A	0.121975	8E-15				Affymetrix, Illumina [24588908] (imputed)	N
1456	chr10	114167215	114167216	rs2419626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q25.2	NR	rs2419626-A	0.115356	7E-15		0.022248	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1456	chr10	114169189	114169190	rs3736947	32968195	Nakamura R	2020-09-23	Commun Biol	A multi-ethnic meta-analysis identifies novel genes, including ACSL5, associated with amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,173 Japanese cases, 8.925 Japanese controls, 20,806 European ancestry cases, 53,439 European ancestry controls	1,234 Chinese ancestry cases, 2,850 Chinese ancestry controls, 707Japanese ancestry cases, 971 Japanese ancestry controls	10q25.2	ACSL5	rs3736947-C		8E-11		1.087	[1.073-1.101]	Illumina [4249201] (imputed)	N
1456	chr10	114169275	114169276	rs3736946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	10q25.2	NR	rs3736946-G	NR	8E-12		0.0255	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1456	chr10	114174430	114174431	rs4501923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q25.2	Intergenic	rs4501923-A	0.4833	1E-9	(MTAG)	0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1456	chr10	114186623	114186624	rs2256368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q25.2	ACSL5	rs2256368-A	0.9039772	7E-12		0.025851147	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr10	114199286	114199287	rs11195959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10q25.2	ZDHHC6	rs11195959-A	0.095616	2E-9		0.022691121	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1456	chr10	114202525	114202526	rs12355831	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q25.2	intergenic	rs12355831-G	0.11	2E-6		1.09	[1.05-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1456	chr10	114262772	114262773	rs111936498	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	10q25.2		rs111936498-?	NR	2E-10		1.14	[1.09-1.2]	Illumina [NR] (imputed)	N
1456	chr10	114265070	114265071	rs77802795	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	10q25.2		rs77802795-?	NR	1E-13	(Colorectal polyp)	1.11	[1.08-1.14]	Illumina [NR] (imputed)	N
1456	chr10	114278733	114278734	rs4554811	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10q25.2		rs4554811-?	0.27	8E-14	(East Asian)	1.1111112	[1.09-1.15]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1456	chr10	114280701	114280702	rs12241008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10q25.2		rs12241008-C	NR	2E-13		0.1183	[0.087-0.15] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1456	chr10	114280701	114280702	rs12241008	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	10q25.2		rs12241008-C	0.252938392	3E-11		1.1408169	[1.097285168-1.186075571]	Illumina [8919992] (imputed)	N
1456	chr10	114280701	114280702	rs12241008	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	10q25.2	VTI1A	rs12241008-C	0.27	2E-11		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1456	chr10	114280701	114280702	rs12241008	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10q25.2	NR	rs12241008-C	NR	3E-12		1.1350738	[1.1-1.18]	Illumina [6774630] (imputed)	N
1456	chr10	114280701	114280702	rs12241008	25105248	Wang H	2014-08-08	Nat Commun	Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A.	Colorectal cancer	2,627 Japanese ancestry cases, 3,797 Japanese ancestry controls, 1,893 African American cases, 4,703 African American controls	16,823 European ancestry cases, 18,211 European ancestry controls	10q25.2	VTI1A	rs12241008-C	0.090	1E-9		1.13	[1.09-1.18]	Illumina [4276079] (imputed)	N
1456	chr10	114288618	114288619	rs12246635	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q25.2	VTI1A	rs12246635-C	0.0983	5E-12		1.1	[1.07-1.14]	Affymetrix, Illumina [16900397] (imputed)	N
1457	chr10	114294891	114294892	rs12255141	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	10q25.2	NR	rs12255141-G	0.1	3E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [> 10000000] (imputed)	N
1457	chr10	114305801	114305802	rs55831503	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.2	NR	rs55831503-C	0.479	3E-10		0.00713184	[0.0049-0.0093] unit decrease	NR [9732723] (imputed)	N
1457	chr10	114306440	114306441	rs80207046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	10q25.2		rs80207046-T	0.250103461	5E-11		0.12903193	[0.09-0.168] unit increase	Illumina [13428297] (imputed)	N
1457	chr10	114319379	114319380	rs10506868	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q25.2	VTI1A	rs10506868-T	0.28	4E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1457	chr10	114324034	114324035	rs7100296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	10q25.2		rs7100296-A	NR	2E-9		0.0981	[0.066-0.13] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1457	chr10	114348465	114348466	rs11818906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q25.2		rs11818906-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1457	chr10	114368641	114368642	rs17266687	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction	120,590 European ancestry individuals	NA	10q25.2		rs17266687-?	NR	2E-8		1.2	[0.79-1.61] unit decrease	Affymetrix [NR] (imputed)	N
1457	chr10	114372898	114372899	rs12245585	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.2		rs12245585-G	0.893	7E-9		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1457	chr10	114376264	114376265	rs4918760	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q25.2	VTI1A	rs4918760-C	0.352292	3E-12		0.0134902	[0.0097-0.0173] unit decrease	NR [13737936] (imputed)	N
1457	chr10	114376264	114376265	rs4918760	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q25.2		rs4918760-?	NR	8E-11		0.0128811	[0.0086-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
1457	chr10	114384056	114384057	rs10787453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.2		rs10787453-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1457	chr10	114386738	114386739	rs76124550	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q25.2	NR	rs76124550-?	NR	1E-6	(Latino)	1.0661	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1457	chr10	114388271	114388272	rs17267338	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		10q25.2	VTI1A	rs17267338-?		8E-6	(Cluxel size)			Illumina [208975]	N
1457	chr10	114410997	114410998	rs11196033	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	10q25.2	VTI1A	rs11196033-A	0.48	4E-8		0.0042	[0.0026-0.0058] unit increase	Affymetrix, Illumina [9574088] (imputed)	N
1458	chr10	114457099	114457100	rs7079005	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.2	ZDHHC6	rs7079005-?	NR	4E-6	(CE 18:1)	0.17793001	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1458	chr10	114459696	114459697	rs11599775	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	10q25.2	VTI1A	rs11599775-G	0.62	3E-9		1.16	1.10-1.22	Illumina [at least 6769856] (imputed)	N
1458	chr10	114462681	114462682	rs142003303	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		VTI1A	rs142003303-?	NR	3E-8		0.52	[NR] unit increase	Affymetrix [NR] (imputed)	N
1458	chr10	114467516	114467517	rs7906312	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	10q25.2	VTI1A	rs7906312-A	0.19	8E-10		0.77	[0.52-1.02] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
1458	chr10	114468136	114468137	rs7907361	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	10q25.2	VTI1A	rs7907361-C	0.26	1E-9	(European)	0.47	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1458	chr10	114468136	114468137	rs7907361	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	10q25.2	VTI1A	rs7907361-C		6E-12		0.45	[0.31-0.59] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1458	chr10	114469967	114469967	rs577023212	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	10q25.2		rs577023212-C	0.754368	1E-8		0.0499851	[0.033-0.067] decrease	Affymetrix [NR]	N
1458	chr10	114479261	114479262	rs7342028	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	10q25.2	NR	rs7342028-?	NR	6E-8		0.5211167	[0.33-0.71] unit increase	Illumina [26566045] (imputed)	N
1458	chr10	114479261	114479262	rs7342028	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q25.2	NR	rs7342028-?	NR	1E-11	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1458	chr10	114479261	114479262	rs7342028	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q25.2	NR	rs7342028-?	NR	1E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1458	chr10	114479276	114479277	rs6585178	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	10q25.2	VTI1A	rs6585178-G	0.239	5E-12		0.714	[0.51-0.92] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1458	chr10	114486866	114486867	rs7088860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	10q25.2		rs7088860-G	0.239220074	5E-9		0.14957294	[0.099-0.2] unit increase	Illumina [13429980] (imputed)	N
1458	chr10	114486866	114486867	rs7088860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	10q25.2		rs7088860-G	NR	5E-9		0.1415	[0.094-0.189] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
1458	chr10	114487811	114487812	rs11196078	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	10q25.2	VTI1A	rs11196078-A	0.259	2E-10		1.2588518	1.15-1.38	Illumina [6530233] (imputed)	N
1458	chr10	114487811	114487812	rs11196078	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	10q25.2	VTI1A	rs11196078-A	0.259	4E-12		1.217904	1.15-1.29	Illumina [6530233] (imputed)	N
1458	chr10	114487924	114487925	rs12265047	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	10q25.2	NR	rs12265047-G	NR	8E-10		0.89	[0.85-0.92]	NR [NR] (imputed)	N
1458	chr10	114487924	114487925	rs12265047	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	10q25.2	VTI1A	rs12265047-G	0.243	8E-10		1.13	[1.09-1.17]	Illumina [~ 11000000] (imputed)	N
1458	chr10	114498475	114498476	rs7086803	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	10q25.2	NR	rs7086803-A	NR	3E-13		1.17	[1.12-1.23]	NR [NR] (imputed)	N
1458	chr10	114498475	114498476	rs7086803	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	10q25.2	NR	rs7086803-A	0.28	3E-10	(East Asian)	1.14	[1.1-1.19]	Illumina [~ 11000000] (imputed)	N
1458	chr10	114498475	114498476	rs7086803	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	10q25.2	NR	rs7086803-A	0.28	1E-12	(East Asian)	1.18	[1.13-1.24]	Illumina [~ 11000000] (imputed)	N
1458	chr10	114498475	114498476	rs7086803	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	10q25.2	VTI1A	rs7086803-A	0.27	4E-18		1.28	[1.21-.1.35]	Illumina [596032]	N
1458	chr10	114505036	114505037	rs11196085	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	10q25.2	TCF7L2	rs11196085-T	0.721	7E-8		0.19	[0.12-0.26] unit decrease	Affymetrix [8590397] (imputed)	N
1458	chr10	114505464	114505465	rs7918405	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	VTI1A	rs7918405-G	0.725639	7E-41	(16 ms)	0.0835663	[0.071-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr10	114505464	114505465	rs7918405	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	VTI1A	rs7918405-G	0.725639	3E-40	(18 ms)	0.0828342	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr10	114505464	114505465	rs7918405	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	VTI1A	rs7918405-G	0.725639	3E-40	(14 ms)	0.0826944	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr10	114505464	114505465	rs7918405	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.2	VTI1A	rs7918405-G	0.725639	3E-38	(20 ms)	0.0803841	[0.068-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr10	114505464	114505465	rs7918405	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	10q25.2	VTI1A	rs7918405-?	NR	1E-14	(EA)	0.5	[0.36-0.64] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1458	chr10	114506291	114506292	rs7096151	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	10q25.2	VTI1A	rs7096151-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1458	chr10	114507595	114507596	rs7070850	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.2	TCF7L2	rs7070850-?	NR	5E-7	(CE 20:4)	0.18516894	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1458	chr10	114514050	114514051	rs6585184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q25.2		rs6585184-T	NR	1E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1458	chr10	114529024	114529025	rs7071256	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	10q25.2	VTI1A	rs7071256-?	NR	5E-6		1.2338673	[1.13-1.35]	Illumina [5842835] (imputed)	N
1459	chr10	114578874	114578875	rs12766378	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.2	NR	rs12766378-T	0.256	8E-8		0.00664605	[0.0042-0.0091] unit decrease	NR [9732723] (imputed)	N
1459	chr10	114599034	114599035	rs17746147	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	10q25.2	LOC103344931, TCF7L2	rs17746147-C	0.961	7E-6		1.59	[1.30-1.93]	Affymetrix, Illumina [12148595] (imputed)	N
1459	chr10	114638848	114638849	rs4133131	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	10q25.2	NR	rs4133131-A	0.2505	2E-6		0.1667	[0.098-0.235] unit increase	Illumina [10677593] (imputed)	N
1459	chr10	114683976	114683977	rs12255439	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q25.2		rs12255439-C	0.46	1E-20		9.33	z score increase	Affymetrix [9061022] (imputed)	N
1459	chr10	114683976	114683977	rs12255439	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q25.2		rs12255439-C	0.46	8E-18		8.6	z score increase	Affymetrix [9061022] (imputed)	N
1459	chr10	114683976	114683977	rs12255439	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q25.2	TCF7L2	rs12255439-?		9E-11				NR [7428630] (imputed)	N
1459	chr10	114684671	114684672	rs7092736	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q25.2	NR	rs7092736-T	0.4843	9E-16				NR [9056863] (imputed)	N
1459	chr10	114686149	114686150	rs113679577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.2	NR	rs113679577-A	0.01045	6E-9	(SERPINF1)	0.02434	NR unit increase	Illumina [1671387] (imputed)	N
1460	chr10	114699834	114699835	rs536643418	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs536643418-G	0.0052	3E-8		1.5	[1.30-1.73]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114702961	114702962	rs140242150	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs140242150-A	0.005	2E-8		1.36	[1.22-1.52]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114703135	114703136	rs7918400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q25.2		rs7918400-C	0.523	5E-9		0.012982445	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
1460	chr10	114703135	114703136	rs7918400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q25.2		rs7918400-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1460	chr10	114703135	114703136	rs7918400	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs7918400-T	0.4761	2E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114708509	114708510	rs3814570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	10q25.2	TCF7L2	rs3814570-T	0.287108	8E-9		0.014112855	[0.0093-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1460	chr10	114711672	114711672	rs112385175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q25.2	TCF7L2	rs112385175-C	0.466607	7E-14		0.016648376	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q25.2		rs10885396-C	0.44	4E-14		7.57	z score increase	Affymetrix [9061022] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q25.2	NR	rs10885396-T	NR	2E-10		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q25.2	TCF7L2	rs10885396-T	0.541077	1E-16		0.018467063	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs10885396-T	0.511238	2E-16				Affymetrix, Illumina [24332387] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q25.2	NR	rs10885396-T	0.542481	7E-13		0.013349	[0.0097-0.017] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs10885396-T	0.521762	3E-15				Affymetrix, Illumina [23467995] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q25.2	NR	rs10885396-T	0.542305	3E-14		0.014356	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	10q25.2	TCF7L2	rs10885396-T	0.5406	1E-10		0.02303407	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1460	chr10	114711754	114711755	rs10885396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	10q25.2	TCF7L2	rs10885396-T	0.5405	1E-10		0.02320868	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1460	chr10	114712153	114712154	rs7094871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q25.2		rs7094871-G	NR	2E-10		0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1460	chr10	114712153	114712154	rs7094871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q25.2		rs7094871-G	NR	2E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1460	chr10	114712153	114712154	rs7094871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.2	NR	rs7094871-G	0.513616	9E-10				Affymetrix, Illumina [24558453] (imputed)	N
1460	chr10	114712153	114712154	rs7094871	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q25.2	NR	rs7094871-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114712153	114712154	rs7094871	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q25.2	TCF7L2	rs7094871-G	0.54	5E-8		1.04	[1.03-1.06]	Illumina [20370935] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q25.2		rs2104598-A	NR	2E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	10q25.2		rs2104598-A	0.383543	2E-9		0.0233705	[0.016-0.031] unit decrease	Illumina [13477433] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q25.2		rs2104598-A	NR	7E-11		0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q25.2	NR	rs2104598-G	0.4774	3E-12				NR [9056863] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.2	Intergenic	rs2104598-A	0.5273	3E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1460	chr10	114715597	114715598	rs2104598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.2	Intergenic	rs2104598-A	0.5266	6E-9	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1460	chr10	114719741	114719742	rs35263806	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	10q25.2		rs35263806-G	NR	6E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1460	chr10	114721236	114721237	rs11196169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.2		rs11196169-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1460	chr10	114721670	114721671	rs720784	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q25.2	NR	rs720784-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114722620	114722621	rs11196170	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q25.2	TCF7L2	rs11196170-G	0.793573	3E-41		0.0307313	[0.026-0.035] unit increase	NR [13737936] (imputed)	N
1460	chr10	114722620	114722621	rs11196170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q25.2		rs11196170-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1460	chr10	114722620	114722621	rs11196170	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	10q25.2	TCF7L2	rs11196170-A	0.2178	3E-7		1.06	[1.03-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1460	chr10	114724472	114724473	rs11196171	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	10q25.2	NR	rs11196171-G	NR	3E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1460	chr10	114724472	114724473	rs11196171	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q25.2		rs11196171-?	NR	4E-35		0.0307374	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1460	chr10	114724472	114724473	rs11196171	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q25.2	TCF7L2	rs11196171-A	0.791398	4E-7	(men)	0.0342678	[0.022-0.047] unit increase	NR [17166351] (imputed)	N
1460	chr10	114724472	114724473	rs11196171	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q25.2	TCF7L2	rs11196171-A	0.791018	7E-11		0.0285922	[0.02-0.037] unit increase	NR [17166351] (imputed)	N
1460	chr10	114725925	114725926	rs7068313	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	10q25.2		rs7068313-T	NR	7E-10		1.1248943	[1.08363385941129-1.16772565013563]	Illumina [8919992] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	10q25.2		rs11196172-A	0.69	2E-15	(East Asian)	1.12	[1.09-1.15]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	10q25.2	TCF7L2	rs11196172-A	0.69	3E-15		1.12	[1.09-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10q25.2	TCF7L2	rs11196172-A	0.662	4E-10		1.146	[1.098-1.196]	Illumina [6774630] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	10q25.2	NR	rs11196172-A	NR	1E-9		1.114	[1.076-1.154]	Illumina [6774630] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	10q25.2	NR	rs11196172-A	0.68	1E-12		1.14	[1.10-1.18]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1460	chr10	114726842	114726843	rs11196172	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	10q25.2	TCF7L2	rs11196172-A	0.68	1E-12	(East Asian)	1.14	[1.10-1.18]	Affymetrix, Illumina [2400000] (imputed)	N
1460	chr10	114732881	114732882	rs7917983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10q25.2	TCF7L2	rs7917983-C	NR	9E-10		0.0196318	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1460	chr10	114732881	114732882	rs7917983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q25.2	TCF7L2	rs7917983-C	NR	8E-11		0.019934	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1460	chr10	114732881	114732882	rs7917983	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	10q25.2	TCF7L2	rs7917983-C	0.46544901	4E-11		0.00492074	[0.0035-0.0064] unit increase	Affymetrix [9463307] (imputed)	N
1460	chr10	114734095	114734096	rs11196174	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	10q25.2	TCF7L2	rs11196174-G	0.28	8E-7		1.13	[1.07-1.18]	Illumina [2568349] (imputed)	N
1460	chr10	114737776	114737777	rs117229942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q25.2		rs117229942-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1460	chr10	114737776	114737777	rs117229942	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	10q25.2	TCF7L2	rs117229942-C	0.99182	4E-11		1.4285715	[1.3-1.61]	NR [10849711] (imputed)	N
1460	chr10	114740336	114740337	rs184509201	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs184509201-C	0.9818	1E-13		1.21	[1.15-1.27]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114740744	114740745	rs7081062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs7081062-A	NR	5E-27		0.0271	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114740744	114740745	rs7081062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs7081062-A	NR	1E-17		0.0219	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114742468	114742469	rs190552429	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - metformin (UKB data field 20003_1140884600)	11,358 European ancestry cases, 444,918 European ancestry controls	NA	10q25.2		rs190552429-T	0.008166	4E-9		0.47	[0.31-0.63] unit decrease	NR [11842647] (imputed)	N
1460	chr10	114742468	114742469	rs190552429	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Diabetes mellitus (UKB data field 2443)	21,969 European ancestry cases, 433,048 European ancestry controls	NA	10q25.2		rs190552429-T	0.008218	2E-11		0.39	[0.28-0.5] unit decrease	NR [11842647] (imputed)	N
1460	chr10	114746579	114746580	rs4073980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs4073980-G	NR	3E-13		0.0216155	[0.016-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1460	chr10	114747276	114747277	rs4073288	34265237	Roychowdhury T	2021-07-10	Am J Hum Genet	Regulatory variants in TCF7L2 are associated with thoracic aortic aneurysm.	Thoracic aortic aneurysms	1,351 European ancestry cases, 18,295 European ancestry controls	7,919 white British ancestry cases, 403,354 white British ancestry controls	10q25.2		rs4073288-A	NR	5E-9	(index)	0.1	[0.061-0.139] unit decrease	Illumina [22980809] (imputed)	N
1460	chr10	114747276	114747277	rs4073288	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q25.2	NR	rs4073288-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114747860	114747860	rs386418874	31324766	Adeyemo AA	2019-07-19	Nat Commun	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.	Type 2 diabetes	2,342 Sub-Saharan African ancestry cases, 2,889 Sub-Saharan African ancestry controls, 8,599 African American individuals	NA	10q25.2	TCF7L2	rs386418874-?	NR	6E-11		6.536	NR z score increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1460	chr10	114748616	114748617	rs4074718	34265237	Roychowdhury T	2021-07-10	Am J Hum Genet	Regulatory variants in TCF7L2 are associated with thoracic aortic aneurysm.	Thoracic aortic aneurysms	1,351 European ancestry cases, 18,295 European ancestry controls	7,919 white British ancestry cases, 403,354 white British ancestry controls	10q25.2		rs4074718-A	NR	6E-9	(fine-mapped)	0.09	[0.051-0.129] unit decrease	Illumina [22980809] (imputed)	N
1460	chr10	114749017	114749018	rs11196181	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs11196181-A	NR	5E-18		0.0445	[0.035-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1460	chr10	114749733	114749734	rs35011184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q25.2	NR	rs35011184-G	0.7797	2E-543		0.2508	[0.24-0.26] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1460	chr10	114751172	114751173	rs180988137	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs180988137-G	0.0104	6E-6		1.17	[1.09-1.25]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114752409	114752410	rs116859590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs116859590-T	NR	4E-16		0.0627	[0.048-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114752409	114752410	rs116859590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs116859590-T	NR	2E-9		0.0472	[0.032-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q25.2	NR	rs17747324-?	NR	9E-8		0.131037	[0.083-0.179] unit increase	NR [13958389] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q25.2	NR	rs17747324-T		1E-15		0.11	[0.09-0.13] unit increase	NR [NR]	N
1460	chr10	114752502	114752503	rs17747324	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	10q25.2	NR	rs17747324-T	0.772158	6E-10		0.00801034	[0.0053-0.0107] unit increase	Affymetrix [16582621] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting glucose levels (pleiotropy)	54,162 European ancestry cases, 58,047 European ancestry individuals	NA	10q25.2	TCF7L2	rs17747324-?		5E-9				NR [NR]	N
1460	chr10	114752502	114752503	rs17747324	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	10q25.2	TCF7L2	rs17747324-C	0.2489	6E-11		0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	10q25.2	TCF7L2, MIR4295, VTI1A	rs17747324-T	0.77	8E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	10q25.2	TCF7L2, MIR4295, VTI1A	rs17747324-T	0.77	3E-13		0.031	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114752502	114752503	rs17747324	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q25.2	TCF7L2, MIR4295, VTI1A	rs17747324-T	0.77	3E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114753258	114753259	rs61875120	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	10q25.2	TCF7L2	rs61875120-T	0.7703	1E-8		0.0765	[0.049-0.104] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	10q25.2		rs34872471-T	0.707789	3E-17		0.0380775	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q25.2		rs34872471-C	NR	1E-234		0.2972	[0.28-0.32] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q25.2		rs34872471-C	NR	9E-32		0.0698	[0.058-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	10q25.2		rs34872471-C	NR	3E-85		0.0508	[0.046-0.056] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	10q25.2	TCF7L2	rs34872471-T	0.748	2E-6		0.0285	[0.017-0.04] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	10q25.2	TCF7L2	rs34872471-T	0.658	5E-6		0.0332	[0.019-0.047] unit decrease	Affymetrix, Illumina [27843817] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	10q25.2		rs34872471-C	0.2951964	1E-52		1.36		Affymetrix [15533686] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q25.2	NR	rs34872471-C	0.0449	1E-49		0.2937	[0.25-0.33] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	30729179	Zenin A	2019-01-30	Commun Biol	Identification of 12 genetic loci associated with human healthspan.	Healthspan	300,447 British ancestry individuals	81,099 European ancestry individuals, 3,073 African ancestry individuals, 6,921 South Asian ancestry individuals, 1,422 Chinese ancestry individuals, 3,799 Caribbean individuals	10q25.2	NR	rs34872471-C	0.293754	4E-30		0.0611304	[0.051-0.072] unit increase	Affymetrix [11309218] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	10q25.2	TCF7L2	rs34872471-C	NR	1E-94		1.4231888		Affymetrix, Illumina [~ 13000000] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q25.2	TCF7L2	rs34872471-T		4E-9		0.25	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.2	TCF7L2	rs34872471-T		4E-9	(EA)	0.259	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.2	TCF7L2	rs34872471-T		1E-10		0.262	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q25.2	TCF7L2	rs34872471-T		5E-13		0.204	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	10q25.2	TCF7L2	rs34872471-C	0.28	6E-53		1.31	[1.26-1.35]	NR [at least 8497425] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q25.2	TCF7L2	rs34872471-C	NR	3E-23	(Japanese)	1.4288245	[1.33153664655159-1.53322028389107]	Illumina [7521072] (imputed)	N
1460	chr10	114754070	114754071	rs34872471	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	10q25.2	TCF7L2	rs34872471-C	0.40	8E-8		1.32	[1.19-1.46]	Illumina [5891794] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	10q25.2		rs7901695-C	0.047422	9E-9		0.0568779	[0.038-0.076] unit increase	Illumina [13466143] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q25.2		rs7901695-C	0.042503062	7E-52		1.3568672	[1.304370287-1.411477054]	Illumina [8919992] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q25.2	TCF7L2	rs7901695-C	0.038	8E-62		1.32	[1.27-1.36]	Affymetrix, Illumina [11800000] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q25.2	TCF7L2	rs7901695-C	0.04	3E-49		1.34	1.29-1.40	Illumina [12557761] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	10q25.2	TCF7L2	rs7901695-?	NR	3E-12		0.1174	[0.084-0.15] unit increase novel	Illumina [6108953] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q25.2	TCF7L2	rs7901695-T	0.6904	6E-7		0.0304	[0.018-0.042] unit decrease	NR [8041861] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Type 2 diabetes	1,264 African American cases, 5,678 African American controls	503 African American cases, 1,656 African American controls	10q25.2	TCF7L2	rs7901695-?	0.45	1E-6	(T2D)	1.1947432	[1.11-1.28]	Affymetrix [~ 2740000] (imputed)	N
1460	chr10	114754087	114754088	rs7901695	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	10q25.2	TCF7L2	rs7901695-C	NR	1E-48	(DGI+FUSION+WTCCC)	1.37	[1.31-1.43]	Affymetrix [393453]	N
1460	chr10	114754783	114754784	rs35198068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q25.2		rs35198068-C	NR	3E-13		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q25.2		rs35198068-C	0.044861068	1E-32		0.28197375	[0.24-0.33] unit increase	Illumina [13134967] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q25.2		rs35198068-C	NR	7E-184		0.0708	[0.066-0.076] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q25.2		rs35198068-C	NR	2E-14		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	10q25.2	NR	rs35198068-C		5E-65		1.21		NR [8016731] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	10q25.2	NR	rs35198068-C	NR	9E-48		1.18	NR	NR [8016731] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	10q25.2	TCF7L2	rs35198068-T	0.71	4E-28				NR [7320282]	N
1460	chr10	114754783	114754784	rs35198068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q25.2	NR	rs35198068-T	0.709536	2E-19		0.0112339	[0.0086-0.0139] unit increase	Affymetrix [16585854] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q25.2	NR	rs35198068-T	0.709536	2E-8		0.00791408	[0.0049-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q25.2	NR	rs35198068-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q25.2	TCF7L2	rs35198068-T	0.7212	3E-13		0.028	[0.021-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q25.2	TCF7L2	rs35198068-T	0.7063	6E-9		0.024734	[0.016-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q25.2	NR	rs35198068-T	0.2648	9E-8	(men)	0.0349	[0.022-0.048] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1460	chr10	114754783	114754784	rs35198068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q25.2		rs35198068-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q25.2		rs4506565-T	0.041235517	2E-47		0.31806538	[0.27-0.36] unit increase	Illumina [13429769] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	10q25.2		rs4506565-T	NR	9E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	10q25.2	TCF7L2	rs4506565-A	0.693619	2E-9		0.018546	[0.012-0.025] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	10q25.2	TCF7L2	rs4506565-A	0.693619	2E-15		0.026217	[0.02-0.033] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	10q25.2	TCF7L2	rs4506565-A	0.693619	8E-24		0.021991	[0.018-0.026] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	10q25.2	TCF7L2	rs4506565-?	NR	7E-11				NR [NR]	N
1460	chr10	114756040	114756041	rs4506565	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q25.2	NA	rs4506565-A	0.6992	2E-22		0.017	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	10q25.2	NR	rs4506565-?	NR	8E-17				Affymetrix [NR]	N
1460	chr10	114756040	114756041	rs4506565	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	10q25.2	NR	rs4506565-?	NR	2E-9				Affymetrix [NR]	N
1460	chr10	114756040	114756041	rs4506565	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	10q25.2	NR	rs4506565-?	NR	4E-16				Affymetrix [NR]	N
1460	chr10	114756040	114756041	rs4506565	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	10q25.2	TCF7L2	rs4506565-T	0.329613833793701	3E-13		0.024141746	[0.018-0.031] unit increase	Illumina [197481]	N
1460	chr10	114756040	114756041	rs4506565	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	10q25.2	TCF7L2	rs4506565-T	0.31	1E-8				Affymetrix, Illumina [~ 2500000] (imputed)	N
1460	chr10	114756040	114756041	rs4506565	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	10q25.2	TCF7L2	rs4506565-T	0.32	5E-12		1.36	[1.20-1.54]	Affymetrix [469557]	N
1460	chr10	114757955	114757956	rs78025551	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs78025551-C	0.851	2E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	10q25.2		rs7903146-T	0.2625	2E-12		0.0515	[0.037-0.066] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	10q25.2		rs7903146-T	0.2869	9E-8		0.0599	[0.038-0.082] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Type 2 diabetes	9,486 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.285325	6E-18		1.345	[1.257 - 1.439]	Illumina [5399457] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.259	9E-15		1.559	[1.394 - 1.745]	Illumina [5398302] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q25.2	TCF7L2	rs7903146-C	0.259052	3E-10		1.402	[1.262 - 1.557]	Illumina [5400100] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.259052	6E-16		1.417	[1.302 - 1.542]	Illumina [5397657] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	10q25.2		rs7903146-T	0.71	5E-10		1.06	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q25.2		rs7903146-T	0.044689	2E-9		0.0391263	[0.026-0.052] unit decrease	Illumina [13479924] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q25.2		rs7903146-T	NR	1E-14		0.1668	[0.12-0.21] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q25.2		rs7903146-T	NR	6E-175		0.3169	[0.29-0.34] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q25.2		rs7903146-T	0.044621	4E-9		0.0451858	[0.03-0.06] unit decrease	Illumina [13479178] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-T	0.2641	3E-26		0.0854	[0.068-0.102] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	12,578 Hispanic individuals	NA	10q25.2	TCF7L2	rs7903146-T	0.2413	7E-7		0.1217	[0.075-0.169] unit increase	Illumina [24662309] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-T	0.2777	1E-22		0.0133	[0.011-0.016] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-T	0.2717	1E-9		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-T	0.2717	2E-35		0.0259	[0.022-0.03] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs7903146-T	NR	1E-13		0.0230131	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs7903146-T	NR	6E-14		0.0233495	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs7903146-T	NR	3E-11		0.02141	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.6829	2E-77				Affymetrix, Illumina [2331072] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.6829	2E-15				Affymetrix, Illumina [2331072] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting glucose (pairwise)	380,336 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.6829	4E-19				Affymetrix, Illumina [2331072] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.6829	7E-77				Affymetrix, Illumina [2331072] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting glucose (pairwise)	148,718 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.6829	7E-10				Affymetrix, Illumina [2331072] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	10q25.2	TCF7L2	rs7903146-T		8E-20		1.58	[NR]	Illumina [10000000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	10q25.2	TCF7L2	rs7903146-C	0.713199	1E-6		0.020616	[0.012-0.029] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.713199	7E-11		0.017926	[0.013-0.023] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	8,616 Hispanic cases, 11,829 Hispanic controls	NA	10q25.2	NR	rs7903146-T	0.260835	3E-19		0.227926	[0.18-0.28] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	10q25.2	NR	rs7903146-C	0.706	6E-60		0.226	[0.2-0.25] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q25.2	NR	rs7903146-C	0.7079	3E-695		0.28	[0.27-0.29] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q25.2	NR	rs7903146-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.2937	4E-11		1.06	[1.04-1.08]	Affymetrix [at least 20323458] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	10q25.2	NR	rs7903146-?	NR	8E-8		0.05717657	[0.036-0.078] unit increase	Illumina [29713514] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	10q25.2	NR	rs7903146-?	NR	1E-6		0.03582819	[0.021-0.05] unit decrease	Illumina [32062178] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.25	1E-41		1.34	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.356	5E-13		1.32	[1.22-1.33]	Affymetrix, Illumina [12148595] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q25.2	TCF7L2	rs7903146-T	0.29122800000000004	9E-11		0.021695	[0.015-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.291287	4E-145		0.32730255	[0.3-0.35] unit increase	Affymetrix [7288503] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.290995	2E-30		0.07076007	[0.059-0.083] unit increase	Affymetrix [7288503] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q25.2		rs7903146-?	NR	3E-203				NR [~ 8900000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q25.2	TCF7L2	rs7903146-T	0.2906	4E-10		0.2209	[0.15-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q25.2	TCF7L2	rs7903146-T	0.2904	9E-17		0.2209	[0.17-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10q25.2	TCF7L2	rs7903146-T	0.29779	3E-17		1.221	[1.16-1.28]	Illumina [32500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (mild)	4,748 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10q25.2	TCF7L2	rs7903146-T	0.2978	5E-7		1.13	[1.08-1.19]	Illumina [32500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	10q25.2	TCF7L2	rs7903146-T	0.29779	4E-20		1.182	[1.14-1.22]	Illumina [32500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30470734	Hackinger S	2018-11-23	Transl Psychiatry	Evidence for genetic contribution to the increased risk of type 2 diabetes in schizophrenia.	Type 2 diabetes	822 Greek ancestry cases, 1,125 Greek ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.38	3E-11		1.66	[1.50-1.81]	Illumina [14528340] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30470734	Hackinger S	2018-11-23	Transl Psychiatry	Evidence for genetic contribution to the increased risk of type 2 diabetes in schizophrenia.	Schizophrenia vs type 2 diabetes	924 Greek ancestry schizophrenia cases, 822 Greek ancestry T2D cases	NA	10q25.2	TCF7L2	rs7903146-C	0.61	1E-9		1.53	[1.39-1.67]	Illumina [14528340] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.295	6E-447		1.37	[1.35-1.39]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q25.2	NR	rs7903146-T	0.2798	1E-21		0.0181	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q25.2	NA	rs7903146-T	0.2787	2E-23		0.0178	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	10q25.2	NA	rs7903146-T	0.2787	2E-23		0.0178	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q25.2	NR	rs7903146-C	NR	3E-14		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	0.291584512494863	1E-347		0.3059	[0.29-0.32] unit increase	NR [5035015] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	10q25.2	TCF7L2	rs7903146-A		3E-13		0.0075	unit decrease	Illumina [at least 200000]	N
1460	chr10	114758348	114758349	rs7903146	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.31	1E-18		0.028	[0.022-0.034] unit decrease	Illumina [6108953] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.044	9E-12	(Japanese)	0.056	[0.04-0.072] unit decrease	Illumina [6108953] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3171	2E-184	(EA)	0.3286	[0.31-0.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3171	1E-219		0.301	[0.28-0.32] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.2986	3E-23	(South Asian)	0.1981	[0.16-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T		7E-6		0.105	[0.058-0.152] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	10q25.2	TCF7L2	rs7903146-C	0.7145	1E-6		0.0214	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q25.2	TCF7L2	rs7903146-?	NR	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q25.2	TCF7L2	rs7903146-?	NR	2E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q25.2	TCF7L2	rs7903146-C	0.7145	5E-8	(men)	0.0315	[0.02-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	10q25.2	TCF7L2	rs7903146-C	0.7145	5E-10		0.0243	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	6E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	4E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	7E-9	(men)	0.0341	[0.023-0.046] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	7E-10		0.0264	[0.018-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	1E-7	(men)	0.0273	[0.017-0.037] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	10q25.2	TCF7L2	rs7903146-T	0.2894	1E-7		0.0195	[0.012-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls		10q25.2	TCF7L2	rs7903146-T	0.25	1E-11		1.36	[1.25-1.49]	Illumina [NR] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	10q25.2	TCF7L2	rs7903146-?		6E-24	(glucose levels)			Illumina [629274]	N
1460	chr10	114758348	114758349	rs7903146	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	10q25.2	TCF7L2	rs7903146-T	NR	7E-45	(additive model)	1.4	[1.35-1.45]	NR [9288881] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q25.2	NR	rs7903146-T	0.28797015591893	3E-13		0.021989034	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q25.2	TCF7L2	rs7903146-C	0.713	1E-12		0.024	[0.017-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1460	chr10	114758348	114758349	rs7903146	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q25.2	TCF7L2	rs7903146-C	0.713	1E-11	(EA)	0.023	[0.017-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1460	chr10	114758348	114758349	rs7903146	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q25.2	TCF7L2	rs7903146-C	0.712	4E-11	(EA, men)	0.029	[0.021-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1460	chr10	114758348	114758349	rs7903146	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q25.2	TCF7L2	rs7903146-T	0.2866	4E-9	(EA)	0.0219	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q25.2	TCF7L2	rs7903146-T	0.2866	3E-8	(EA, men)	0.0289	[0.019-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q25.2	TCF7L2	rs7903146-T	0.2858	7E-8	(EA, men)	0.0298	[0.019-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q25.2	TCF7L2	rs7903146-T	0.2858	3E-6	(EA,women)	0.0239	[0.014-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	10q25.2	TCF7L2	rs7903146-T	0.2858	2E-11	(EA)	0.0264	[0.019-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3	5E-44	(AA)	1.33	[1.28-1.39]	Affymetrix, Illumina [2579389] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3	4E-94		1.36	[1.32-1.40]	Affymetrix, Illumina [2579389] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3	8E-75		1.4	[1.35-1.46]	Affymetrix, Illumina [2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	24390345	Williams AL	2013-12-25	Nature	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean ancestry cases, 1959 Singaporean ancestry controls	10q25.2	TCF7L2	rs7903146-T	NR	1E-14		1.37	[1.27-1.48]	Illumina [9200000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.04	2E-15		1.48	[1.34-1.63]	Illumina [6209637] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.5	9E-75	(South Asian, East Asian, Europeans)	1.19	[1.17 - 1.21]	Illumina [1232008] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.31	6E-22	(All Punjabi)	1.3	[1.23 - 1.37]	Illumina [1232008] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.31	3E-19	(Punjabi Sikhs)	1.44	[1.33 - 1.56]	Illumina [1232008] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3	3E-35	(South Asians)	1.15	[1.13 - 1.18]	Illumina [1232008] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.3	2E-38	(South Asians, East Asians)	1.15	[1.12 - 1.17]	Illumina [1232008] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.30	1E-35	(Indo-European South Asians)	1.51	[1.42-1.62]	Illumina [536420]	N
1460	chr10	114758348	114758349	rs7903146	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q25.2	TCF7L2	rs7903146-T	NR	6E-92	(men)	1.39	[1.35-1.44]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q25.2	TCF7L2	rs7903146-T	NR	4E-73	(female)	1.39	[1.34-1.44]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	10q25.2	TCF7L2	rs7903146-T	0.268379563153031	1E-139		1.39	[1.35-1.42]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q25.2	TCF7L2	rs7903146-T	0.29	4E-21	(Obese)	1.26	[1.20 - 1.32]	NR [NR]	N
1460	chr10	114758348	114758349	rs7903146	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	10q25.2	TCF7L2	rs7903146-T	0.29	2E-40	(Lean)	1.58	[1.47-1.68]	NR [NR]	N
1460	chr10	114758348	114758349	rs7903146	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T	0.2871	3E-6		7.362E-4	[-0.00066-0.00213] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T	0.2724	3E-7		0.0185	[0.011-0.026] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T	0.2886	2E-14		0.0024	[0.00098-0.00382] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T	0.2876	1E-9		0.0212	[0.014-0.028] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	22101970	Kho AN	2011-11-19	J Am Med Inform Assoc	Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.	Type 2 diabetes	2,413 European ancestry cases, 2,392 European ancestry controls, 810 African American cases, 873 African American controls	NA	10q25.2	TCF7L2	rs7903146-T	0.26 (EA+AA)	2E-15		1.46	[NR]	Illumina [NR]	N
1460	chr10	114758348	114758349	rs7903146	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	10q25.2	TCF7L2	rs7903146-T	0.30	2E-20				Affymetrix, Illumina [~ 2500000] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	20849430	Franklin CS	2010-09-16	Ann Hum Genet	The TCF7L2 diabetes risk variant is associated with HbA?(C) levels: a genome-wide association meta-analysis.	Glycated hemoglobin levels	1,782 European ancestry individuals	NA	10q25.2	TCF7L2	rs7903146-C	0.72	1E-7		0.05	[0.02-0.08] % HbA1C decrease	Illumina [256587]	N
1460	chr10	114758348	114758349	rs7903146	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	10q25.2	TCF7L2	rs7903146-A	0.30	7E-7	(T2D)	1.33	[1.19-1.49]	Illumina [308011]	N
1460	chr10	114758348	114758349	rs7903146	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	10q25.2	TCF7L2	rs7903146-T		2E-51		1.4	[1.34-1.46]	Affymetrix, Illumina [2426886] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.27	1E-30		1.48	[1.39-1.57]	Illumina [392365]	N
1460	chr10	114758348	114758349	rs7903146	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.04	8E-12		1.54	[1.36-1.74]	Illumina [482625]	N
1460	chr10	114758348	114758349	rs7903146	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	10q25.2	TCF7L2	rs7903146-?	NR	9E-30	(non-obese)	1.49	[1.39-1.59]	Affymetrix [393453]	N
1460	chr10	114758348	114758349	rs7903146	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	10q25.2	TCF7L2	rs7903146-?	NR	6E-16	(obese)	1.31	[1.23-1.40]	Affymetrix [393453]	N
1460	chr10	114758348	114758349	rs7903146	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	NR	3E-23		1.37	[1.28-1.47]	Affymetrix, Illumina [2202892] (imputed)	N
1460	chr10	114758348	114758349	rs7903146	17668382	Salonen JT	2007-06-26	Am J Hum Genet	Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium.	Type 2 diabetes	201 Finland founder cases, 200 Finland founder controls, 200 Ashkenazi Jewish cases, 197 Ashkenazi Jewish controls, 99 European ancestry cases, 100 European ancestry controls	2,573 European ancestry cases, 2,776 European ancestry controls	10q25.2	TCF7L2	rs7903146-A	NR	5E-8		1.71	[1.41-2.08]	Illumina [315917]	N
1460	chr10	114758348	114758349	rs7903146	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.18	1E-8		1.34	[1.21-1.49]	Illumina [315635]	N
1460	chr10	114758348	114758349	rs7903146	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	10q25.2	TCF7L2	rs7903146-T	0.26	1E-48		1.37	[1.31-1.43]	Affymetrix [386731]	N
1460	chr10	114758348	114758349	rs7903146	17460697	Steinthorsdottir V	2007-04-26	Nat Genet	A variant in CDKAL1 influences insulin response and risk of type 2 diabetes.	Type 2 diabetes	1,399 European ancestry cases, 5,275 European ancestry controls	2,174 European ancestry cases, 7,287 European ancestry controls	10q25.2	TCF7L2	rs7903146-?	0.30	2E-10		1.38	[NR]	Illumina [at least 313179]	N
1460	chr10	114758348	114758349	rs7903146	17293876	Sladek R	2007-02-11	Nature	A genome-wide association study identifies novel risk loci for type 2 diabetes.	Type 2 diabetes	661 European ancestry cases, 614 European ancestry controls	2,617 European ancestry cases, 2,894 European ancestry controls	10q25.2	TCF7L2	rs7903146-T	0.30	2E-34		1.65	[1.28, 2.02]	Illumina [392935]	N
1460	chr10	114764660	114764661	rs10787471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10q25.2	TCF7L2	rs10787471-A	NR	3E-10		0.0203679	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1460	chr10	114765170	114765171	rs6585199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q25.2	TCF7L2	rs6585199-A	NR	1E-8		0.0175454	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1460	chr10	114765746	114765747	rs4575195	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q25.2	TCF7L2	rs4575195-C	0.686634	9E-11		0.00959417	[0.0067-0.0125] unit increase	Affymetrix [12370749]	N
1460	chr10	114765746	114765747	rs4575195	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	10q25.2	TCF7L2	rs4575195-?	NR	2E-31				NR [3144808] (imputed)	N
1460	chr10	114765746	114765747	rs4575195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q25.2		rs4575195-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1460	chr10	114766716	114766717	rs7896811	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	10q25.2	TCF7L2	rs7896811-?	NR	7E-9				NR [NR]	N
1460	chr10	114767770	114767771	rs4132670	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Retinopathy x type 2 diabetes interaction	13,881 European ancestry cases, 123,538 European ancestry controls	NA	10q25.2	TCF7L2	rs4132670-A	0.319	2E-8				Affymetrix [at least 723305] (imputed)	N
1460	chr10	114767770	114767771	rs4132670	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	10q25.2	TCF7L2	rs4132670-?	NR	4E-11				NR [5554549] (imputed)	N
1460	chr10	114767770	114767771	rs4132670	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	10q25.2	TCF7L2	rs4132670-?	NR	3E-15				NR [5554549] (imputed)	N
1460	chr10	114768782	114768783	rs6585201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs6585201-A	NR	9E-15		0.0219971	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114768782	114768783	rs6585201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs6585201-A	NR	2E-15		0.0225504	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114768782	114768783	rs6585201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs6585201-A	NR	5E-8		0.0156579	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
1460	chr10	114768782	114768783	rs6585201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q25.2		rs6585201-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1460	chr10	114772253	114772253	rs11386117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	10q25.2		rs11386117-C	0.532204	5E-9		0.0242117	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1460	chr10	114773607	114773608	rs55899248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs55899248-G	NR	1E-8		0.0196734	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1460	chr10	114773607	114773608	rs55899248	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	10q25.2	TCF7L2	rs55899248-?	0.22	2E-9		1.2120184	[1.13-1.29]	Affymetrix [NR] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	34265237	Roychowdhury T	2021-07-10	Am J Hum Genet	Regulatory variants in TCF7L2 are associated with thoracic aortic aneurysm.	Thoracic aortic aneurysms	1,351 European ancestry cases, 18,295 European ancestry controls	7,919 white British ancestry cases, 403,354 white British ancestry controls	10q25.2		rs7904519-G	NR	3E-9	(genotyped)	0.09	[0.07-0.11] unit decrease	Illumina [22980809] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q25.2		rs7904519-A	NR	2E-13		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.2	TCFL2	rs7904519-G	0.46	2E-13	(EA)	1.03	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	10q25.2	NR	rs7904519-G	0.46	8E-10		1.08	[1.04-1.11] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10q25.2	NR	rs7904519-G	0.46	5E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10q25.2	NR	rs7904519-G	0.46	9E-13		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1460	chr10	114773926	114773927	rs7904519	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q25.2	TCF7L2	rs7904519-G	0.46	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1460	chr10	114774432	114774433	rs36090025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	10q25.2		rs36090025-A	0.7	4E-11		0.012	nmol/L increase	NR [NR] (imputed)	N
1460	chr10	114774432	114774433	rs36090025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q25.2		rs36090025-A	0.7	2E-21				NR [NR] (imputed)	N
1460	chr10	114774432	114774433	rs36090025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q25.2		rs36090025-A	0.7	1E-11		0.011	% increase	NR [NR] (imputed)	N
1460	chr10	114777669	114777670	rs10885405	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.2	NR	rs10885405-T	0.46	5E-14	(EA)	0.0465	[0.034-0.059] unit increase	Illumina [~ 11800000] (imputed)	N
1460	chr10	114781949	114781950	rs55853916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diabetic nephropathy	1,032 European ancestry cases, 451,248 European ancestry controls, 220 East Asian ancestry cases, 132,764 East Asian ancestry controls	NA	10q25.2		rs55853916-C	NR	3E-8		0.3454	[0.22-0.47] unit increase	Affymetrix, Illumina [25836444] (imputed)	N
1460	chr10	114782802	114782803	rs6585202	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	10q25.2	TCF7L2	rs6585202-?	0.47	1E-9		1.1	[1.05-1.14] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1460	chr10	114788435	114788436	rs56299331	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q25.2	VTI1A, TCF7L2	rs56299331-?		9E-46				Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114788435	114788436	rs56299331	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	10q25.2	NR	rs56299331-T	0.2027	3E-12		0.0608	[0.044-0.078] unit decrease	Illumina [~ 10600000] (imputed)	N
1460	chr10	114788435	114788436	rs56299331	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	10q25.2	TCF7L2	rs56299331-?	NR	1E-16		1.078	[1.059-1.098]	Illumina [13762925] (imputed)	N
1460	chr10	114788814	114788815	rs12243326	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	10q25.2	TCF7L2	rs12243326-T	0.7458	1E-6		0.018	[0.011-0.025] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114788814	114788815	rs12243326	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	TCF7L2	rs12243326-T	0.7308	7E-13		0.0019	[0.00042-0.00338] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114788814	114788815	rs12243326	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	10q25.2	TCF7L2	rs12243326-T	0.7307	2E-8		0.02	[0.013-0.027] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1460	chr10	114788814	114788815	rs12243326	20081857	Saxena R	2010-01-17	Nat Genet	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	10q25.2	TCF7L2	rs12243326-C	NR	1E-7		0.08	[0.06-0.10] mmol/L increase	Affymetrix, Illumina [NR]	N
1460	chr10	114789544	114789545	rs148288814	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANKRD27	5,358 Icelandic ancestry individuals	NA	10q25.2		rs148288814-T	0.01264	1E-15		0.169935	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1460	chr10	114790107	114790108	rs74825300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs74825300-T	NR	5E-9		0.0252	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1460	chr10	114790107	114790108	rs74825300	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q25.2	NR	rs74825300-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1460	chr10	114793571	114793572	rs116369954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs116369954-C	NR	2E-19		0.0642	[0.05-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114793571	114793572	rs116369954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs116369954-C	NR	1E-9		0.0442	[0.03-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114795255	114795256	rs4367880	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	10q25.2	TCF7L2	rs4367880-G	0.8	4E-8		0.088	[0.057-0.119] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1460	chr10	114796424	114796424	rs142827301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs142827301-CTTCTTTCTTTCT	NR	1E-11		0.0238477	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114796424	114796424	rs142827301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs142827301-CTTCTTTCTTTCT	NR	4E-12		0.0243587	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114801487	114801488	rs72826094	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q25.2	TCF7L2	rs72826094-?	NR	4E-7		0.164539	[0.1-0.23] unit increase	NR [13958389] (imputed)	N
1460	chr10	114801487	114801488	rs72826094	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	10q25.2	TCF7L2	rs72826094-A	0.7991	3E-15		7.883	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1460	chr10	114804347	114804348	rs55993230	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.2	NR	rs55993230-?	NR	5E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1460	chr10	114808071	114808072	rs10885409	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Blood glucose levels	up to 33,431 European ancestry individuals	NA	10q25.2	TCF7L2	rs10885409-G	0.4621	2E-8		0.6717068	[0.44-0.91] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1460	chr10	114809148	114809149	rs77795162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs77795162-T	NR	9E-10		0.0526	[0.036-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1460	chr10	114818041	114818042	rs61123794	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	10q25.2	TCF7L2	rs61123794-T	0.0193324	2E-8		0.23610312	[0.15-0.32] unit decrease	Affymetrix [7288503] (imputed)	N
1460	chr10	114818753	114818754	rs35519679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs35519679-A	NR	5E-10		0.0204122	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114818753	114818754	rs35519679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs35519679-A	NR	5E-10		0.020487	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1460	chr10	114818753	114818754	rs35519679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs35519679-A	NR	2E-9		0.0203496	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1461	chr10	114820960	114820961	rs4918788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs4918788-A	NR	9E-9		0.0162985	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1461	chr10	114820960	114820961	rs4918788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs4918788-A	NR	6E-9		0.0164562	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1461	chr10	114820960	114820961	rs4918788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q25.2	TCF7L2	rs4918788-A	NR	1E-9		0.0178483	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1461	chr10	114820960	114820961	rs4918788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs4918788-A	NR	1E-17		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1461	chr10	114820960	114820961	rs4918788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	10q25.2	NR	rs4918788-A	NR	8E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1461	chr10	114831433	114831434	rs3829909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q25.2		rs3829909-T	NR	4E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1461	chr10	114835451	114835452	rs4277044	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	10q25.2	TCF7L2	rs4277044-A	0.02	8E-6	(female)	0.746	[0.42-1.07] unit decrease	Illumina [6380737] (imputed)	N
1461	chr10	114836180	114836181	rs116929578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	10q25.2	NR	rs116929578-G	NR	6E-10		0.0379	[0.026-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1461	chr10	114839715	114839716	rs12768310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q25.2	TCF7L2	rs12768310-A	0.278313	3E-9		0.0146690635	[0.0098-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr10	114871593	114871594	rs34855922	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q25.3	TCF7L2	rs34855922-A	0.7162	6E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1461	chr10	114874018	114874019	rs290475	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q25.3		rs290475-?	NR	4E-8				NR [NR]	N
1461	chr10	114874018	114874019	rs290475	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q25.3		rs290475-?	NR	4E-8				NR [NR]	N
1461	chr10	114874018	114874019	rs290475	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q25.3		rs290475-?	NR	1E-8				NR [NR]	N
1461	chr10	114874018	114874019	rs290475	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q25.3	NR	rs290475-?	NR	3E-7				NR [up to 8466825] (imputed)	N
1461	chr10	114874405	114874406	rs11196234	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q25.3	NR	rs11196234-?	NR	5E-6		4.572	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1461	chr10	114877866	114877867	rs74157220	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q25.3	NR	rs74157220-T	0.031	6E-6		0.267	[0.15-0.38] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1461	chr10	114880341	114880342	rs4918796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	10q25.3		rs4918796-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1461	chr10	114880341	114880342	rs4918796	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q25.3	TCF7L2	rs4918796-C	0.222568957792386	4E-13		0.0623	[0.045-0.079] unit increase	NR [5035015] (imputed)	N
1461	chr10	114880341	114880342	rs4918796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.3	Intergenic	rs4918796-T	0.7652	4E-10	(MTAG)	0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1461	chr10	114880341	114880342	rs4918796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.3	Intergenic	rs4918796-T	0.7652	5E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1461	chr10	114880550	114880551	rs12772424	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	10q25.3	TCF7L2	rs12772424-?	NR	3E-8				NR [up to 8466825] (imputed)	N
1461	chr10	114887217	114887218	rs7906315	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.3	NR	rs7906315-G	0.6218	2E-8	(EA)	0.0357	[0.023-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
1461	chr10	114889260	114889261	rs880082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.3	Intergenic	rs880082-A	0.2201	5E-8	(MTAG)	0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1461	chr10	114901756	114901756	rs529175664	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TCF7L2	rs529175664-?	NR	1E-8	(female)	1.32684	[NR] unit increase	Affymetrix [NR] (imputed)	N
1461	chr10	114904200	114904201	rs12775879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.3		rs12775879-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1461	chr10	114912969	114912970	rs11594566	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q25.3	TCF7L2	rs11594566-C	0.7996	4E-8		0.094	[0.06-0.128] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1461	chr10	114912982	114912983	rs11594610	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11594610-G	0.795832	7E-16		0.0843359	[0.062-0.107] decrease	Affymetrix [11014269] (imputed)	N
1462	chr10	114958560	114958561	rs11593678	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	Intergenic	rs11593678-?		1E-8		122.9	[80.76-165.04] unit decrease	Illumina [~ 10000000] (imputed)	N
1462	chr10	114976297	114976307	rs148627949	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	10q25.3		rs148627949-?	NR	4E-7		0.2685769	[0.17-0.37] unit increase	Illumina [9906551] (imputed)	N
1462	chr10	114977368	114977369	rs9325542	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	10q25.3	NR	rs9325542-?	NR	8E-8	(Cytochrome c)	0.15	[0.091-0.209] unit increase	Illumina [4020654] (imputed)	N
1462	chr10	114992257	114992257	rs35947579	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	10q25.3		rs35947579-?	NR	3E-6		0.2886701	[0.17-0.41] unit decrease	Illumina [9901720] (imputed)	N
1462	chr10	115057442	115057443	rs11196288	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke	2,567 European ancestry cases, 17,163 European ancestry controls, 381 African American ancestry cases, 352 African American ancestry controls, 678 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	1,003 European ancestry cases, 7,745 European ancestry controls	10q25.3	TCF7L2, HABP2	rs11196288-G	0.05	1E-8		1.41	[1.25-1.59]	Illumina [up to 13439215] (imputed)	N
1462	chr10	115070139	115070140	rs499832	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q25.3	HABP2	rs499832-C	0.2	2E-7	(AA)	6.66	[5.72-7.6]	Illumina [905956]	N
1463	chr10	115106329	115106330	rs4918814	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	10q25.3	NR	rs4918814-C	0.2835	1E-8		0.0177	[0.012-0.024] unit decrease	Illumina [NR] (imputed)	N
1463	chr10	115108981	115108982	rs10885434	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q25.3	TCF7L2	rs10885434-G	0.278898	7E-24		0.0209004	[0.017-0.025] unit increase	NR [13737936] (imputed)	N
1463	chr10	115108981	115108982	rs10885434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q25.3		rs10885434-?	NR	4E-25				NR [~ 8900000] (imputed)	N
1463	chr10	115111091	115111092	rs515028	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q25.3		rs515028-?	NR	4E-8				NR [NR]	N
1463	chr10	115115162	115115163	rs579914	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q25.3		rs579914-?	NR	5E-8				NR [NR]	N
1463	chr10	115128490	115128491	rs12250948	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.3	NR	rs12250948-C	0.7844	1E-14	(EA)	0.0576	[0.043-0.072] unit decrease	Illumina [~ 11800000] (imputed)	N
1463	chr10	115150270	115150271	rs568110	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	10q25.3	HABP2	rs568110-T	0.2057	5E-12		0.0523	[0.037-0.067] unit increase	Illumina [NR]	N
1463	chr10	115166769	115166770	rs10885447	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q25.3		rs10885447-?	NR	1E-25		0.0264048	[0.021-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1463	chr10	115166769	115166770	rs10885447	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q25.3	HABP2	rs10885447-G	0.788055	2E-10		0.0262896	[0.018-0.034] unit decrease	NR [17166351] (imputed)	N
1463	chr10	115166769	115166770	rs10885447	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q25.3	HABP2	rs10885447-G	0.786843	2E-8	(men)	0.034292	[0.022-0.047] unit decrease	NR [17166351] (imputed)	N
1463	chr10	115176529	115176530	rs10787486	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	Intergenic	rs10787486-?		3E-34		190.8	[160.42-221.18] unit increase	Illumina [~ 10000000] (imputed)	N
1463	chr10	115189238	115189239	rs116718588	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	10q25.3	HABP2, TCF7L2	rs116718588-A	0.955	3E-8	(AA)	0.134	[0.087-0.181] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1463	chr10	115191168	115191169	rs11599095	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q25.3		rs11599095-?	NR	4E-9		0.0166342	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1463	chr10	115192481	115192482	rs7079743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q25.3		rs7079743-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1463	chr10	115193949	115193949	rs11421589	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q25.3	intergenic	rs11421589-CT	0.5556	6E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix [18391927] (imputed)	N
1463	chr10	115196676	115196677	rs539102983	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	10q25.3	RP11-481H12.1	rs539102983-C	0.0028	3E-7		0.7249	[0.45-1] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1464	chr10	115235113	115235114	rs1472750	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10q25.3	intergenic	rs1472750-?	0.075	5E-9			[NR]	Affymetrix, Illumina [152234]	N
1464	chr10	115238763	115238764	rs17770015	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q25.3	intergenic	rs17770015-G	0.1	3E-6		1.17	[1.10-1.25]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1464	chr10	115250649	115250650	rs58742730	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.3	NR	rs58742730-G	0.1799	6E-9	(EA)	0.0467	[0.031-0.062] unit increase	Illumina [~ 11800000] (imputed)	N
1464	chr10	115259105	115259106	rs1891760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q25.3		rs1891760-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1464	chr10	115279810	115279811	rs7100851	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q25.3	HABP2	rs7100851-A	0.7512	5E-9	(AA)	0.0909	[0.06-0.121] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1464	chr10	115288500	115288501	rs1570271	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	10q25.3	intergenic	rs1570271-?		1E-7	(disease-free survival)	3.66	[2.26-5.94]	Illumina [729737]	N
1464	chr10	115291014	115291015	rs7903474	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7903474-T	0.757658	2E-8		0.0593877	[0.039-0.08] increase	Affymetrix [11014269] (imputed)	N
1464	chr10	115296563	115296564	rs2419835	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	10q25.3	HABP2	rs2419835-?	NA	3E-11		1.96	[1.37-2.55] unit decrease	Affymetrix [5541230] (imputed)	N
1464	chr10	115296563	115296564	rs2419835	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	10q25.3	HABP2	rs2419835-T	0.65	2E-9		2.27	[1.54-3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1464	chr10	115327272	115327273	rs61867369	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.3	HABP2	rs61867369-T	0.007	3E-18	(Glypican-1, GPC1.8697.38.3)	1.34	[1.05-1.63] unit increase	Affymetrix [10572788] (imputed)	N
1464	chr10	115335982	115335983	rs2419841	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	10q25.3	NR	rs2419841-C	NR	5E-6		0.1277	[0.073-0.182] SD units increase	NR [10700000] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PACSIN1	5,357 Icelandic ancestry individuals	NA	10q25.3		rs7080536-A	0.03907	5E-74		0.84961	[0.76-0.94] unit decrease	Illumina [7506463] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNGR1	5,366 Icelandic ancestry individuals	NA	10q25.3		rs7080536-A	0.03907	4E-31		0.543041	[0.45-0.63] unit increase	Illumina [7506463] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC5A	5,365 Icelandic ancestry individuals	NA	10q25.3		rs7080536-A	0.03907	5E-86		0.918382	[0.83-1.01] unit decrease	Illumina [7506463] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	10q25.3		rs7080536-A	NR	5E-11		0.0287	[0.02-0.037] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	10q25.3		rs7080536-A	0.0431	1E-12		0.1	[0.08-0.12] unit decrease	Illumina [26711992] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q25.3	HABP2	rs7080536-A	0.043277	3E-21		0.05211327	[0.041-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	10q25.3	HABP2	rs7080536-A	0.043284	3E-18		0.04798498	[0.037-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.3	NR	rs7080536-A	0.0413959	6E-16				Affymetrix, Illumina [19872809] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	10q25.3	NR	rs7080536-A	0.043176	1E-18		0.043694	[0.034-0.053] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.3	NR	rs7080536-A	0.03136	4E-10	(ABCB6)	0.02947	NR unit increase	Illumina [1671387] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A		8E-8		0.11	[NR] unit decrease	Illumina [24111857] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q25.3		rs7080536-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	HABP2	rs7080536-?		7E-142		429.0	[397.44-460.56] unit decrease	Illumina [~ 10000000] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A	0.044	6E-63	(C-type lectin domain family 5 member A, CLEC5A.8282.15.3)	1.01	[0.89-1.13] unit decrease	Affymetrix [10572788] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A	0.044	4E-26	(Gastrin-releasing peptide, GRP.8339.72.3)	0.65	[0.53-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A	0.044	4E-24	(Interferon gamma receptor 1, IFNGR1.5825.49.3)	0.63	[0.51-0.75] unit increase	Affymetrix [10572788] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A	0.0441	2E-9		0.05257079	[0.035-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1465	chr10	115348045	115348046	rs7080536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	10q25.3	HABP2	rs7080536-A	0.0441	7E-9		0.05103154	[0.034-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1465	chr10	115355484	115355485	rs181024055	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine without aura (age at onset)	548 Han Chinese ancestry individuals	NA	10q25.3		rs181024055-?	NR	5E-8		23.74	unit increase	Affymetrix [NR]	N
1465	chr10	115355484	115355485	rs181024055	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine (age at onset)	715 Han Chinese ancestry individuals	NA	10q25.3		rs181024055-?	NR	5E-8		20.41	unit increase	Affymetrix [NR]	N
1465	chr10	115372155	115372156	rs1539587	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	NRAP	rs1539587-?		5E-6	(conditioned on rs7080536)			Illumina [~ 10000000] (imputed)	N
1465	chr10	115376650	115376651	rs3127084	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q25.3	NRAP	rs3127084-G	0.477821	5E-10		0.0116056	[0.0079-0.0153] unit increase	NR [13737936] (imputed)	N
1465	chr10	115377502	115377503	rs10509982	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q25.3	NR	rs10509982-C	0.287	2E-12		0.0113587	[0.0082-0.0145] unit increase	NR [9732723] (imputed)	N
1465	chr10	115378363	115378364	rs10885480	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.3		rs10885480-T	0.721	1E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1465	chr10	115378363	115378364	rs10885480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.3	NR	rs10885480-C	0.284	5E-16		0.0097705	[0.0074-0.0121] unit decrease	NR [9732723] (imputed)	N
1465	chr10	115378363	115378364	rs10885480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q25.3	NR	rs10885480-C	0.284	4E-11		0.018677495	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1465	chr10	115378363	115378364	rs10885480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q25.3		rs10885480-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1465	chr10	115410233	115410234	rs2185913	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q25.3	CASP7	rs2185913-T	0.6993	1E-8		0.012406672	[0.0081-0.0167] unit increase	Affymetrix [11514654] (imputed)	N
1465	chr10	115438362	115438366	rs369832192	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q25.3	NR	rs369832192-C	0.4764	4E-6	(EA)	0.0302	[0.017-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
1465	chr10	115458935	115458936	rs12777332	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	10q25.3	CASP7	rs12777332-G	NR	5E-15	(female)	1.0407	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
1465	chr10	115459640	115459641	rs201589481	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	Intergenic	rs201589481-?		7E-55		369.0	[323.53-414.47] unit decrease	Illumina [~ 10000000] (imputed)	N
1466	chr10	115481017	115481018	rs3814231	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	10q25.3	CASP7	rs3814231-G	0.75	4E-8		1.23	[NR]	Illumina [495821]	N
1466	chr10	115485284	115485285	rs141266925	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cataract (PheCode 366)	14,867 European ancestry cases, 441,481 European ancestry controls	NA	10q25.3		rs141266925-C	0.003027	3E-12		0.82	[0.59-1.05] unit increase	NR [11842647] (imputed)	N
1466	chr10	115485284	115485285	rs141266925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	10q25.3		rs141266925-C	NR	6E-14		0.384	[0.28-0.48] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1466	chr10	115488330	115488331	rs12771452	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	10q25.3	CASP7	rs12771452-G	0.74	4E-12		1.2183236	[1.15-1.28]	Illumina [8966411] (imputed)	N
1466	chr10	115490108	115490109	rs1127687	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.3	C10orf81	rs1127687-?	NR	9E-6	(LPE 18:2)	0.17013937	[0.095-0.245] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1466	chr10	115515119	115515120	rs3981351	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q25.3	C10orf81	rs3981351-G	0.276	1E-6	(Free T3 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1466	chr10	115545590	115545591	rs74402361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.3	Intergenic	rs74402361-C	0.8061	2E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1466	chr10	115558324	115558325	rs78672550	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	10q25.3	NR	rs78672550-A	0.01	1E-6		1.7	[1.48-1.92]	Illumina [8468885] (imputed)	N
1466	chr10	115588393	115588394	rs151125960	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	10q25.3	Intergenic	rs151125960-?		2E-27		281.9	[231.53-332.27] unit decrease	Illumina [~ 10000000] (imputed)	N
1466	chr10	115599081	115599082	rs59682205	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.3	NR	rs59682205-T		3E-6	(EA)	1.207	unit increase	Affymetrix [at least 2696785] (imputed)	N
1466	chr10	115599081	115599082	rs59682205	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.3	NR	rs59682205-T		2E-6		1.045	unit increase	Affymetrix [at least 2696785] (imputed)	N
1466	chr10	115599081	115599082	rs59682205	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.3	NR	rs59682205-T		4E-8		0.801	unit increase	Affymetrix [at least 2696785] (imputed)	N
1466	chr10	115599081	115599082	rs59682205	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	10q25.3	NR	rs59682205-T		2E-6	(EA)	0.816	unit increase	Affymetrix [at least 2696785] (imputed)	N
1466	chr10	115599081	115599082	rs59682205	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q25.3	NR	rs59682205-T		3E-6		0.545	unit increase	Affymetrix [at least 2696785] (imputed)	N
1467	chr10	115625046	115625047	rs117477265	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	10q25.3	NR	rs117477265-T	0.0486	1E-6		0.3472	[0.21-0.49] unit decrease	Illumina [10677593] (imputed)	N
1467	chr10	115710662	115710663	rs59448728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	10q25.3		rs59448728-A	0.212554	1E-8		0.0238726	[0.016-0.032] unit increase	Illumina [13477770] (imputed)	N
1467	chr10	115719471	115719472	rs180943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q25.3		rs180943-G	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1467	chr10	115719471	115719472	rs180943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q25.3	NR	rs180943-G	0.587015	4E-16		0.01833849	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1467	chr10	115719471	115719472	rs180943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q25.3		rs180943-G	0.587019	3E-9		0.013399346	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1467	chr10	115719471	115719472	rs180943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q25.3		rs180943-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1467	chr10	115719808	115719809	rs180942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.3	NR	rs180942-G	0.581572	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
1467	chr10	115720673	115720674	rs180941	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q25.3	NR	rs180941-A	0.625014	2E-18		0.016866	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1467	chr10	115720673	115720674	rs180941	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q25.3	NR	rs180941-A	0.625196	8E-11		0.013018	[0.0091-0.0169] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1467	chr10	115721363	115721364	rs460718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q25.3		rs460718-G	NR	3E-17		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1467	chr10	115722410	115722411	rs180940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	10q25.3		rs180940-G	NR	3E-8		0.0383	[0.025-0.052] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	10q25.3	ADRB1	rs180940-?	NR	5E-11				Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	10q25.3	ADRB1	rs180940-?	NR	2E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q25.3	ADRB1	rs180940-?	NR	8E-11				Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q25.3	ADRB1	rs180940-?		3E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	10q25.3	ADRB1	rs180940-?	NR	5E-12				Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	10q25.3	ADRB1	rs180940-?	NR	3E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q25.3	ADRB1	rs180940-?	NR	5E-12				Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115722410	115722411	rs180940	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	10q25.3	ADRB1	rs180940-?	NR	2E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1467	chr10	115725279	115725280	rs74157561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q25.3		rs74157561-G	NR	2E-9		0.0594	[0.04-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1467	chr10	115732087	115732087	rs377740714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q25.3		rs377740714-AAG	NR	5E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1467	chr10	115732087	115732087	rs377740714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q25.3		rs377740714-AAG	NR	6E-11		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1468	chr10	115738558	115738559	rs180913	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q25.3	NR	rs180913-A	0.4529	1E-11	(East Asian)	0.4315	[0.31-0.56] unit increase	Illumina [6200000] (imputed)	N
1468	chr10	115738558	115738559	rs180913	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q25.3	NR	rs180913-A	0.4529	4E-12	(East Asian)	0.3122	[0.22-0.4] unit increase	Illumina [6200000] (imputed)	N
1468	chr10	115738558	115738559	rs180913	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	10q25.3	NR	rs180913-A	0.4529	6E-11	(East Asian)	0.2633	[0.18-0.34] unit increase	Illumina [6200000] (imputed)	N
1468	chr10	115741827	115741828	rs180912	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	10q25.3	NR	rs180912-T	0.5777	2E-9	(East Asian)	0.071	[0.048-0.094] unit decrease	Illumina [6200000] (imputed)	N
1468	chr10	115744937	115744938	rs12769537	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	10q25.3	Intergenic	rs12769537-?		2E-6	(female)	0.458	[0.27-0.65] unit increase	NR [~ 5500000] (imputed)	N
1468	chr10	115746550	115746551	rs6585256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q25.3		rs6585256-C	0.731593	3E-9		0.01545062	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1468	chr10	115746550	115746551	rs6585256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q25.3		rs6585256-C	0.731553	7E-11		0.016987508	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1468	chr10	115756129	115756130	rs82625	22388998	Zhang CK	2012-01-19	Am J Hematol	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NA	10q25.3	ADRB1	rs82625-?	NR	2E-6				Illumina [540902]	N
1468	chr10	115781526	115781527	rs2782980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q25.3		rs2782980-C	NR	1E-19		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	10q25.3		rs2782980-C	NR	3E-20		0.0216	[0.017-0.026] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q25.3		rs2782980-?	NR	2E-33				NR [~ 8900000] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q25.3	ADRB1	rs2782980-?	NR	2E-14				Affymetrix, Illumina [18800000] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q25.3	ADRB1	rs2782980-?		1E-21				Affymetrix, Illumina [18800000] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q25.3	ADRB1	rs2782980-C	0.707	6E-6	(EA, initial)	0.373	[0.21-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q25.3	ADRB1	rs2782980-C	0.707	8E-6	(EA, initial)	0.224	[0.13-0.32] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1468	chr10	115781526	115781527	rs2782980	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	10q25.3	ADRB1	rs2782980-T	0.20	2E-9	(Mean Arterial Pressure)	0.338	[0.23-0.45] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1468	chr10	115782060	115782061	rs67234920	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q25.3	ADRB1	rs67234920-G	0.89	2E-10		0.67	[0.45-0.89] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1468	chr10	115782060	115782061	rs67234920	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q25.3	ADRB1	rs67234920-G	0.9032	4E-8		0.6188	[0.4-0.84] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q25.3		rs72823013-G	0.873664	2E-13		0.045509	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q25.3		rs72823013-G	0.873664	4E-13		0.0447513	[0.033-0.057] unit increase	NR [11722792] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	10q25.3		rs72823013-G	0.873664	1E-9		0.0372514	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q25.3		rs72823013-A	NR	4E-10		0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q25.3		rs72823013-A	NR	3E-22		0.033	[0.026-0.04] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q25.3		rs72823013-A	NR	1E-10		0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1468	chr10	115786232	115786233	rs72823013	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10q25.3	NR	rs72823013-G	0.873563	2E-10		0.0184463	[0.013-0.024] unit increase	Affymetrix [15000001]	N
1468	chr10	115786232	115786233	rs72823013	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q25.3	intergenic	rs72823013-A	0.1124	4E-9		0.0266	[0.018-0.035] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	9E-11		0.0353746	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	5E-8		0.0322388	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	1E-10		0.0352632	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	7E-10		0.0343771	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873632	5E-10		0.0343753	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	5E-9		0.0322043	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	9E-10		0.0334669	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	1E-10		0.0352269	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	2E-8		0.0315203	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	4E-8		0.0315131	[0.02-0.043] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	8E-12		0.0376576	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	3E-10		0.0353736	[0.024-0.046] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	2E-11		0.036707	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	10q25.3		rs72823014-G	0.873617	9E-10		0.0337904	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q25.3	NHLRC2, ADRB1	rs72823014-G	0.87	4E-9		5.9	z-score increase	Affymetrix [4314223] (imputed)	N
1468	chr10	115786235	115786236	rs72823014	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q25.3	ADRB1	rs72823014-G	0.873848	8E-15		0.0230286	[0.017-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1468	chr10	115788494	115788495	rs2782982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q25.3		rs2782982-G	0.477641	2E-9		0.013494807	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1468	chr10	115789374	115789375	rs7076938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q25.3		rs7076938-T	NR	1E-10		0.0098	[0.0069-0.0127] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1468	chr10	115789374	115789375	rs7076938	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q25.3	ADRB1	rs7076938-T	0.735333	2E-28		0.032051	[0.026-0.038] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1468	chr10	115789374	115789375	rs7076938	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10q25.3	ADRB1	rs7076938-C	0.263878	3E-9		0.053165883	[0.036-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1468	chr10	115789374	115789375	rs7076938	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	10q25.3	ADRB1	rs7076938-T	NR	9E-16		0.017042626	[0.013-0.021] unit increase	Illumina [242289]	N
1468	chr10	115789374	115789375	rs7076938	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	10q25.3	NR	rs7076938-T	0.73	2E-8		0.019	unit increase	Illumina [242289]	N
1468	chr10	115789374	115789375	rs7076938	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	10q25.3	ADRB1	rs7076938-T	0.73	5E-18		0.0349	[0.027-0.043] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1468	chr10	115789374	115789375	rs7076938	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	10q25.3	ADRB1	rs7076938-C	0.293363533352563	2E-9		0.30268204	[0.2-0.4] unit decrease	Illumina [247039]	N
1468	chr10	115792061	115792062	rs2484294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	10q25.3		rs2484294-G	0.266434	3E-8		0.0247309	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1468	chr10	115792061	115792062	rs2484294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q25.3		rs2484294-A	NR	3E-13		0.0419	[0.031-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr10	115792061	115792062	rs2484294	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	10q25.3	LOC105378493, ADRB1	rs2484294-A	0.73	2E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115792061	115792062	rs2484294	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q25.3	LOC105378493, ADRB1	rs2484294-A	0.72	2E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115792061	115792062	rs2484294	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q25.3	LOC105378493, ADRB1	rs2484294-A	0.72	1E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115792786	115792787	rs740746	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	10q25.3	NHLRC2-ADRB1	rs740746-G	0.3221	1E-9				Affymetrix, Illumina [2331072] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	9E-10	(258 ms)	0.0396181	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	8E-10	(256 ms)	0.0398485	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	8E-10	(252 ms)	0.0402415	[0.028-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	6E-9	(236 ms)	0.0375682	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	5E-10	(254 ms)	0.0403681	[0.028-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	3E-9	(238 ms)	0.0380414	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	2E-9	(250 ms)	0.039234	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	2E-9	(248 ms)	0.0392337	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	2E-9	(244 ms)	0.0393531	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q25.3	ADRB1	rs740746-G	0.269742	1E-9	(246 ms)	0.0398006	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1468	chr10	115792786	115792787	rs740746	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	10q25.3	NR	rs740746-A	0.7428	1E-8		0.07175104	[0.047-0.096] z score increase	NR [1977400] (imputed)	N
1468	chr10	115792786	115792787	rs740746	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	10q25.3	NR	rs740746-A	0.73	8E-19		0.037240412	[0.029-0.045] unit increase	NR [1977400] (imputed)	N
1468	chr10	115792786	115792787	rs740746	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	10q25.3	NR	rs740746-A	0.668	1E-16		0.051283136	[0.039-0.063] unit increase	NR [1977400] (imputed)	N
1468	chr10	115792786	115792787	rs740746	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	10q25.3	ADRB1	rs740746-?	NR	4E-8				NR [1800000]	N
1468	chr10	115792786	115792787	rs740746	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q25.3	LOC105378493, ADRB1	rs740746-A	0.73	2E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115792786	115792787	rs740746	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	10q25.3	LOC105378493, ADRB1	rs740746-A	0.73	8E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115792786	115792787	rs740746	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q25.3	ADRB1	rs740746-A	0.73	5E-13		0.486	[0.35-0.62] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1468	chr10	115792786	115792787	rs740746	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	10q25.3	ADRB1	rs740746-A	0.73	9E-15		0.32	[0.24-0.4] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1468	chr10	115795235	115795236	rs4619105	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.3		rs4619105-G	NR	4E-6		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1468	chr10	115795235	115795236	rs4619105	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q25.3	NR	rs4619105-G	NR	4E-9		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1468	chr10	115797470	115797471	rs17875419	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	10q25.3	ADRB1	rs17875419-?	0.129832981	5E-7		0.2099	[0.13-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869585	5E-9		0.0344231	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869585	3E-9		0.0344344	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869585	1E-8		0.0344162	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869586	2E-10		0.0380289	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869585	1E-8		0.0349585	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	10q25.3		rs72823020-T	0.869585	3E-9		0.0347737	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q25.3	ADRB1	rs72823020-T	0.869709	6E-12		0.0214421	[0.015-0.028] unit increase	Affymetrix [NR] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q25.3	ADRB1	rs72823020-T	0.869742	5E-25		0.0294401	[0.024-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1468	chr10	115797946	115797947	rs72823020	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q25.3	ADRB1	rs72823020-T	0.869724	2E-13		0.0227752	[0.017-0.029] unit increase	Affymetrix [NR] (imputed)	N
1468	chr10	115798183	115798184	rs55720524	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	10q25.3		rs55720524-G	0.872036	5E-10		0.0385209	[0.026-0.051] unit increase	NR [11722792] (imputed)	N
1468	chr10	115798894	115798895	rs2773469	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q25.3	ADRB1	rs2773469-A	0.266713	2E-16		0.0186292	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1468	chr10	115801252	115801253	rs2429511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q25.3	ADRB1	rs2429511-C	0.478834	1E-13		0.016853286	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	10q25.3		rs1801253-C	NR	1E-8		0.0425	[0.028-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q25.3	NR	rs1801253-C	0.27	2E-14		0.028	[0.02-0.036] z score increase	Affymetrix [up to 10400000] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q25.3	ADRB1	rs1801253-C	0.734184	5E-10		0.021484	[0.015-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	10q25.3	ADRB1	rs1801253-G	0.259296	2E-13		0.050945096	[0.037-0.065] unit decrease	Affymetrix [7288503] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.3		rs1801253-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q25.3		rs1801253-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q25.3	ADRB1	rs1801253-G	0.7099	4E-13		0.2724	[0.2-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q25.3	ADRB1	rs1801253-C	0.73	9E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q25.3	ADRB1	rs1801253-?	NR	1E-22				Affymetrix, Illumina [18800000] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	10q25.3	ADRB1	rs1801253-?		3E-22				Affymetrix, Illumina [18800000] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q25.3	ADRB1	rs1801253-G		2E-10		0.273	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q25.3	ADRB1	rs1801253-G		4E-12		0.183	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1468	chr10	115805055	115805056	rs1801253	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	10q25.3	ADRB1	rs1801253-C	0.7413	1E-10		0.0235	unit increase	Illumina [242296]	N
1468	chr10	115805055	115805056	rs1801253	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	10q25.3	ADRB1	rs1801253-G	0.26	4E-9		0.041	[0.027-0.055] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1468	chr10	115814391	115814392	rs10885531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	10q25.3	NR	rs10885531-T	0.496696	5E-9		0.013063387	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1468	chr10	115814391	115814392	rs10885531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	10q25.3	NR	rs10885531-T	0.496675	5E-9		0.013063418	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1468	chr10	115814391	115814392	rs10885531	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	10q25.3	NR	rs10885531-T	NR	4E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	10q25.3		rs10787517-T	0.39095	1E-8		0.0251281	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	10q25.3		rs10787517-T	0.39095	5E-8		0.0241591	[0.015-0.033] unit increase	NR [11722792] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q25.3		rs10787517-A	NR	3E-17		0.0217	[0.017-0.027] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	10q25.3	UBE2V1P5	rs10787517-?	NR	2E-12		0.0204	[0.015-0.025] unit increase	Affymetrix [5701386] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q25.3	intergenic	rs10787517-A	0.616	8E-13	(EA, initial)	0.622	[0.45-0.79] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1468	chr10	115814805	115814806	rs10787517	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	10q25.3	intergenic	rs10787517-A	0.616	3E-18		0.442	[0.34-0.54] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1468	chr10	115821877	115821878	rs10787518	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q25.3	NR	rs10787518-T	0.4495	9E-9		0.0292	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1468	chr10	115823717	115823718	rs111367839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	10q25.3		rs111367839-A	0.01715	3E-16		0.589388	[0.45-0.73] unit decrease	Illumina [7506463] (imputed)	N
1468	chr10	115841640	115841641	rs2419886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	10q25.3		rs2419886-T	NR	3E-13		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1468	chr10	115841640	115841641	rs2419886	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q25.3	NR	rs2419886-T	0.2555	2E-10		0.001604	[0.0011-0.0021] unit decrease	Affymetrix [NR] (imputed)	N
1468	chr10	115844044	115844045	rs7086063	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.3	C10orf118	rs7086063-?	NR	9E-6	(phosphocreatine)	0.19189748	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1468	chr10	115851566	115851567	rs66654016	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	10q25.3		rs66654016-C	0.1732	6E-21		0.232092	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
1468	chr10	115851566	115851567	rs66654016	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q25.3	NR	rs66654016-C	0.155781	9E-14				Affymetrix, Illumina [23472807] (imputed)	N
1468	chr10	115857396	115857397	rs17091334	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q25.3		rs17091334-?	NR	1E-10				Affymetrix [NR] (imputed)	N
1468	chr10	115860057	115860058	rs12777288	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q25.3	NA	rs12777288-T	0.7714	7E-11		0.0139	[0.0098-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1469	chr10	115899691	115899692	rs71484923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q25.3		rs71484923-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1469	chr10	115905774	115905775	rs11595697	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q25.3	VWA2	rs11595697-C	0.9025	8E-25	(VWA2, 7128_9_3)	0.4314872	[0.35-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
1469	chr10	115907855	115907856	rs1572285	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q25.3		rs1572285-?	NR	1E-10				Affymetrix [NR] (imputed)	N
1469	chr10	115975064	115975065	rs10160173	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.3	NR	rs10160173-?	NR	5E-6				Affymetrix [NR]	N
1469	chr10	115987549	115987550	rs11196660	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	10q25.3		rs11196660-?	NR	5E-12				Affymetrix [NR] (imputed)	N
1469	chr10	115996139	115996147	rs557951828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q25.3	VWA2	rs557951828-C	0.134453	3E-9		0.019989636	[0.013-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1469	chr10	115996157	115996165	rs66518778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q25.3	NR	rs66518778-D	0.134438	5E-18		0.026286	[0.02-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1469	chr10	115998673	115998675	rs138243320	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	10q25.3	NR	rs138243320-I	0.144333	3E-11		0.019649	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1469	chr10	115998675	115998675	rs151157640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	10q25.3	VWA2	rs151157640-TTTC	0.143923	6E-11		0.021398066	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1470	chr10	116021998	116021999	rs12774618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q25.3		rs12774618-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1470	chr10	116032518	116032519	rs597371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	10q25.3		rs597371-G	0.425	6E-39		0.247173	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
1470	chr10	116045795	116045796	rs79009215	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	10q25.3		rs79009215-A	0.01079	9E-12		0.634079	[0.45-0.82] unit decrease	Illumina [7506463] (imputed)	N
1470	chr10	116048277	116048278	rs35716048	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	10q25.3		rs35716048-G	0.03775	3E-27		0.527031	[0.43-0.62] unit decrease	Illumina [7506463] (imputed)	N
1470	chr10	116056980	116056981	rs45528437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q25.3	AFAP1L2	rs45528437-A	0.018393	7E-9		0.048302155	[0.032-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1470	chr10	116056980	116056981	rs45528437	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.3	NR	rs45528437-A	0.01568	3E-9	(PYCARD)	0.01855	NR unit increase	Illumina [1671387] (imputed)	N
1470	chr10	116056980	116056981	rs45528437	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.3	NR	rs45528437-A	0.01568	2E-8	(HSPA4)	0.06877	NR unit increase	Illumina [1671387] (imputed)	N
1470	chr10	116056980	116056981	rs45528437	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q25.3	NR	rs45528437-A	0.01568	1E-8	(PSAP)	0.2039	NR unit increase	Illumina [1671387] (imputed)	N
1470	chr10	116066219	116066220	rs1468498	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	10q25.3	AFAP1L2	rs1468498-?	NR	7E-6		2.001637	[1.47963-2.707806]	Illumina [at least 4756722] (imputed)	N
1470	chr10	116123034	116123035	rs1106475	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Systolic blood pressure	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	10q25.3	AFAP1L2	rs1106475-?		8E-8	(additive)	1.693	[1.08-2.31] unit increase	Affymetrix [583469]	N
1471	chr10	116132245	116132246	rs4751648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q25.3	AFAP1L2	rs4751648-T	0.547211	1E-12		0.016072214	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1471	chr10	116137960	116137961	rs496783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q25.3		rs496783-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1471	chr10	116139028	116139029	rs4751674	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	10q25.3	AFAP1L2	rs4751674-?	NR	4E-6	(PC1)			Illumina [up to 563855]	N
1471	chr10	116168637	116168638	rs11196730	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.3	ABLIM1	rs11196730-?	NR	1E-6	(adipic acid)	0.24099407	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1471	chr10	116169840	116169841	rs941855	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.3	NR	rs941855-?	NR	1E-6				Affymetrix [NR]	N
1471	chr10	116194779	116194780	rs4751906	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	10q25.3	ABLIM1	rs4751906-G	0.53	5E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
1471	chr10	116199174	116199175	rs941853	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q25.3	ABLIM1	rs941853-A	0.189	6E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1471	chr10	116258383	116258384	rs2475229	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including 6-n-propylthiouracil) in obesity with metabolic syndrome	up to 372 individuals	NA	10q25.3	ABLIM1	rs2475229-T	0.024	9E-6		3.004	[1.7-4.31] unit decrease	Illumina [622468]	N
1472	chr10	116316779	116316780	rs2497733	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q25.3	AFAP1L2	rs2497733-?	NR	5E-6	(salicylurate)	0.22889197	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1472	chr10	116353273	116353274	rs77330698	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	10q25.3	NR	rs77330698-G	NR	6E-6		0.6787	NR	Illumina [at least 560000] (imputed)	N
1473	chr10	116394225	116394226	rs59738549	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q25.3		rs59738549-G	0.05049	2E-10		0.3869	[0.27-0.51] unit increase	Illumina [18012714] (imputed)	N
1473	chr10	116402107	116402108	rs2483519	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	10q25.3	ABLIM1	rs2483519-?	NR	2E-6	(adjusted for dose, GFR & AST)	2.729	unit increase (EA, Australian cohort)	Illumina [610255]	N
1474	chr10	116569564	116569565	rs7089973	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	10q25.3	TAF9BP2	rs7089973-C	0.74	2E-8		1.1111112	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1474	chr10	116625566	116625566	rs540948698	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q25.3	NR	rs540948698-?		4E-10		0.013768	[0.0095-0.0181] unit decrease	Affymetrix [19400418] (imputed)	N
1474	chr10	116625890	116625891	rs60820172	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q25.3	FAM160B1	rs60820172-T	0.4	4E-9		5.9	z-score increase	Affymetrix [4311822] (imputed)	N
1474	chr10	116626978	116626978	rs11392511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q25.3		rs11392511-CA	NR	5E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1474	chr10	116627909	116627910	rs1966384	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q25.3	FAM160B1	rs1966384-G	0.604219	2E-16		0.00198536	[0.0015-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
1474	chr10	116647276	116647277	rs113721756	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	10q25.3		rs113721756-T	NR	2E-8		4.9178	[3.26-6.57] unit increase	Illumina [NR] (imputed)	N
1475	chr10	116694630	116694631	rs11196996	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q25.3	TRUB1	rs11196996-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
1475	chr10	116731328	116731329	rs61869271	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	10q25.3	NR	rs61869271-?	NR	6E-6		0.0394	[0.022-0.056] unit increase	Illumina [at least 560000] (imputed)	N
1475	chr10	116753547	116753548	rs12761122	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	10q25.3	TAF9BP2	rs12761122-?	NR	4E-6				Affymetrix, Illumina [NR]	N
1475	chr10	116758078	116758079	rs968847	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	10q25.3	TAF9BP2	rs968847-?	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
1476	chr10	116834271	116834272	rs11197050	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	10q25.3	ATRNL1	rs11197050-A	NR	2E-6		0.217	[0.13-0.31] unit increase	Illumina [5527232] (imputed)	N
1477	chr10	117015420	117015421	rs4328149	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q25.3	ATRNL1	rs4328149-A	0.632	3E-12		0.0086	[0.0062-0.011] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1479	chr10	117189373	117189374	rs865162	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	10q25.3	NR	rs865162-?		2E-6		2.07	[1.22-2.93]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1480	chr10	117439033	117439034	rs2804147	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	10q25.3		rs2804147-A	NR	1E-6		1.0641694	[1.04-1.09]	Illumina [11600722] (imputed)	N
1481	chr10	117472970	117472971	rs78287609	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	10q25.3	ATRNL1	rs78287609-A	NR	9E-6		0.11287581	[0.063-0.163] unit increase	Affymetrix [9576485] (imputed)	N
1481	chr10	117480863	117480864	rs2532718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q25.3		rs2532718-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1481	chr10	117483568	117483569	rs11349289	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	10q25.3	ATRNL1	rs11349289-?	NR	3E-9		0.027	[0.018-0.036] unit increase	Illumina [12039492]	N
1481	chr10	117512587	117512588	rs10490919	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	10q25.3	ATRNL1	rs10490919-T	0.46	2E-6	(digit symbol)	0.12	[0.06-0.18] unit decrease	Illumina [~ 610000]	N
1482	chr10	117633586	117633587	rs2960659	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q25.3	ATRNL1	rs2960659-T	0.223	2E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1482	chr10	117696804	117696805	rs2615880	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	10q25.3	ATRNL1	rs2615880-A	0.1234	8E-6		1.4025246	[1.21-1.63]	Illumina [7521072] (imputed)	N
1483	chr10	117708802	117708803	rs11197481	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA		ATRNL1	rs11197481-G	0.176	9E-6		0.193	[0.12-0.27] unit increase (from the REGISTRY Cohort)	Illumina [9650000] (imputed)	N
1483	chr10	117814518	117814519	rs180558	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	10q25.3	intergenic	rs180558-?	NR	1E-6				Affymetrix, Illumina [2723488] (imputed)	N
1483	chr10	117817550	117817551	rs1679568	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	10q25.3	GFRA1	rs1679568-A	0.15	5E-6	(response at 6 months)	0.44	[NR] unit increase	Illumina [4253138] (imputed)	N
1483	chr10	117817550	117817551	rs1679568	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	10q25.3	GFRA1	rs1679568-?	0.15	8E-7	(GEE model, response at both 3 and 6 months)	0.35	[0.21-0.49] unit increase	Illumina [4253138] (imputed)	N
1483	chr10	117824887	117824888	rs2302105	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q25.3	NR	rs2302105-C	0.768104532915361	4E-6	(IGP50)	0.1688	[0.097-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
1484	chr10	117945765	117945766	rs756318635	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	10q25.3		rs756318635-A	NR	4E-6		0.7539		Affymetrix, Illumina [62056310] (imputed)	N
1484	chr10	117947418	117947419	rs11197576	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	10q25.3		rs11197576-T	0.77	8E-6		1.43	[1.22-1.67]	Illumina [10258281] (imputed)	N
1484	chr10	117949459	117949460	rs3781545	28952330	Chen SP	2017-01-01	Cephalalgia	Genome-wide association study identifies novel susceptibility loci for migraine in Han Chinese resided in Taiwan.	Migraine without aura	1,005 Han Chinese ancestry cases, 1,053 Han Chinese ancestry controls	1,120 Han Chinese ancestry cases, 604 Han Chinese ancestry controls	10q25.3	GFRA1	rs3781545-G	0.784	1E-7		1.378	[1.223-1.553]	Affymetrix [590945]	N
1485	chr10	117966089	117966090	rs10885877	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q25.3	GFRA1	rs10885877-G	0.295	2E-22	(GDNF family receptor alpha-1, GFRA1.3314.74.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1485	chr10	117973596	117973597	rs12413355	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	10q25.3	intergenic	rs12413355-?	0.78	3E-6		1.14	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1485	chr10	117991101	117991102	rs4269847	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GFRA1	5,362 Icelandic ancestry individuals	NA	10q25.3		rs4269847-G	0.274	4E-39		0.271414	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
1485	chr10	117991101	117991102	rs4269847	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q25.3	GFRA1	rs4269847-A	0.73140625	8E-23	(GFRA1, 3314_74_2)	0.27451193	[0.22-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1485	chr10	117991561	117991562	rs17094393	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q25.3	NR	rs17094393-?	NR	4E-8				Affymetrix [NR]	N
1485	chr10	118017963	118017964	rs140018268	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q25.3	NR	rs140018268-?	NR	2E-6	(EA)	0.6172	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1485	chr10	118020380	118020381	rs7079449	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	10q25.3	GFRA1, CCDC172	rs7079449-?		5E-6	(recessive)	0.368	[0.21-0.52] unit decrease	Illumina [1492601] (imputed)	N
1485	chr10	118020380	118020381	rs7079449	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	10q25.3	GFRA1, CCDC172	rs7079449-?		3E-6	(additive)	0.368	[0.21-0.52] unit decrease	Illumina [1492601] (imputed)	N
1485	chr10	118044737	118044738	rs146173241	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	10q25.3	GFRA1, CCDC172	rs146173241-?	0.02	1E-7		7.3	[NR]	Affymetrix [4893794] (imputed)	N
1485	chr10	118088566	118088567	rs118035398	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	10q25.3		rs118035398-?	NR	2E-6		0.5455479	[0.32-0.77] unit increase	Illumina [9906551] (imputed)	N
1486	chr10	118126187	118126188	rs12779131	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	10q25.3	CCDC172	rs12779131-C	0.338716	6E-6		1.542	[1.277 - 1.861]	Illumina [5396854] (imputed)	N
1486	chr10	118157437	118157438	rs78155882	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10q25.3		rs78155882-?	NR	6E-6		0.7094254	[0.4-1.02] unit increase	Illumina [9842460] (imputed)	N
1486	chr10	118187443	118187444	rs41284366	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	10q25.3	PNLIPRP3	rs41284366-?	0.01017	1E-12		10.15	[9.37-10.93]	Affymetrix [547296]	N
1486	chr10	118187443	118187444	rs41284366	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	10q25.3	PNLIPRP3	rs41284366-?	0.01017	3E-8		6.756	[3.125-14.61]	Affymetrix [547296]	N
1486	chr10	118203427	118203428	rs2033397	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	10q25.3	PNLIPRP3	rs2033397-C	0.784	9E-6		0.062	[0.035-0.089] unit decrease	Illumina [5299861] (imputed)	N
1487	chr10	118270434	118270435	rs139561494	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	10q25.3	NR	rs139561494-G		8E-6		0.3219	[0.18-0.46] SD units decrease	NR [10700000] (imputed)	N
1487	chr10	118292154	118292155	rs78740289	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	10q25.3	PNLIPA	rs78740289-?	0.051144	8E-6		2.829821	[1.790824-4.471621]	Affymetrix, Illumina [NR] (imputed)	N
1487	chr10	118298705	118298706	rs12249434	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	10q25.3	PNLIP, PNLIPRP1	rs12249434-A	0.088	4E-6	(Temperament)	0.22	[NR] unit increase	Affymetrix [677643]	N
1487	chr10	118334655	118334656	rs771891953	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10q25.3	PNLIPP1	rs771891953-A	0.9982	3E-6		0.6243	[0.36-0.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1487	chr10	118347885	118347886	rs7906829	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q25.3	intergenic	rs7906829-?	NR	6E-6		0.139	[0.063-0.215] unit decrease	Illumina [at least 13000000] (imputed)	N
1487	chr10	118353252	118353253	rs2915766	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q25.3	PNLIPRP1	rs2915766-C	0.46671875	5E-9	(PNLIPRP1, 6627_25_3)	0.14616653	[0.097-0.195] unit decrease	Illumina [> 1000000] (imputed)	N
1488	chr10	118358658	118358659	rs2915762	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNLIPRP1	5,366 Icelandic ancestry individuals	NA	10q25.3		rs2915762-C	0.4867	5E-16		0.154956	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1488	chr10	118362460	118362461	rs570667964	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	10q25.3		rs570667964-T	0.0212	6E-6		1.77		NR [11110260] (imputed)	N
1488	chr10	118376399	118376400	rs74161807	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	10q25.3	PNLIPRP1, PNLIPRP2	rs74161807-?	NR	4E-6	(EA)			Illumina [7205781] (imputed)	N
1488	chr10	118376399	118376400	rs74161807	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	10q25.3	PNLIPRP1, PNLIPRP2	rs74161807-?	NR	1E-6	(EA)	0.0785	[0.047-0.11] unit increase	Illumina [7176022] (imputed)	N
1488	chr10	118381944	118381945	rs12783584	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:1_[M+H]1+/Phosphatidylethanolamine_39:1_[M+H]1+/Phosphatidate_41:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q25.3		rs12783584-C	NR	1E-14		0.125453	[0.094-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1488	chr10	118381944	118381945	rs12783584	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	10q25.3		rs12783584-C	NR	2E-14		0.0852762	[0.063-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1488	chr10	118385271	118385272	rs1900504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	10q25.3	NR	rs1900504-?	NR	9E-6		0.0395	[0.022-0.057] unit increase	Illumina [at least 560000] (imputed)	N
1488	chr10	118397893	118397894	rs4751996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q25.3		rs4751996-G	NR	2E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1488	chr10	118397893	118397894	rs4751996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:1_[M+H]1+/Phosphatidylethanolamine_39:1_[M+H]1+/Phosphatidate_41:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q25.3		rs4751996-A	NR	4E-18		0.130721	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1488	chr10	118397893	118397894	rs4751996	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	10q25.3		rs4751996-A	NR	2E-17		0.0842135	[0.065-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1488	chr10	118397893	118397894	rs4751996	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10q25.3	NR	rs4751996-A	0.480843	1E-17		0.0164643	[0.013-0.02] unit decrease	Affymetrix [15000001]	N
1488	chr10	118397893	118397894	rs4751996	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q25.3	PNLIPRP2	rs4751996-?	NR	4E-10		0.0161	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1488	chr10	118397970	118397971	rs10885997	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:1_[M+H]1+/Phosphatidylethanolamine_39:1_[M+H]1+/Phosphatidate_41:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q25.3		rs10885997-G	NR	2E-13		0.113854	[0.084-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1488	chr10	118397970	118397971	rs10885997	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	10q25.3		rs10885997-G	NR	5E-13		0.0738242	[0.054-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1488	chr10	118397970	118397971	rs10885997	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	10q25.3	NR	rs10885997-G	NR	7E-9		0.011493974	[0.0076-0.0154] unit increase	Illumina [242289]	N
1488	chr10	118397970	118397971	rs10885997	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	10q25.3	NR	rs10885997-G	0.43	1E-7		0.017	unit increase	Illumina [242289]	N
1488	chr10	118397970	118397971	rs10885997	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	10q25.3	PNLIPRP2	rs10885997-?	NR	8E-9	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1488	chr10	118398045	118398046	rs7910135	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q25.3	PNLIPRP2	rs7910135-C	0.4925	2E-437	(PNLIPRP2, 6957_14_3)	0.9687458	[0.93-1] unit decrease	Illumina [> 1000000] (imputed)	N
1488	chr10	118399376	118399377	rs2420316	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	10q25.3	PNLIPRP1, PNLIPRP2	rs2420316-?		8E-7	(EA)	0.205	[0.12-0.29] unit increase	Illumina [7205781] (imputed)	N
1488	chr10	118404883	118404884	rs10885998	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:1_[M+H]1+/Phosphatidylethanolamine_39:1_[M+H]1+/Phosphatidate_41:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q25.3		rs10885998-A	NR	1E-11		0.111405	[0.079-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1488	chr10	118414854	118414855	rs10787712	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:1_[M+H]1+/Phosphatidylethanolamine_39:1_[M+H]1+/Phosphatidate_41:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	10q25.3		rs10787712-A	NR	9E-11		0.0979415	[0.068-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1488	chr10	118414854	118414855	rs10787712	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	10q25.3		rs10787712-A	NR	2E-10		0.0633685	[0.044-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
1488	chr10	118442510	118442511	rs184279155	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	10q25.3	HSPA12A	rs184279155-A	0.003	2E-6		0.384	[0.23-0.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1488	chr10	118455242	118455243	rs12259842	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	10q25.3	HSPA12A	rs12259842-T	0.25	7E-11		1.23	[1.16-1.31]	Affymetrix [536506]	N
1488	chr10	118456013	118456014	rs2921973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q25.3		rs2921973-T	NR	2E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1488	chr10	118466041	118466042	rs1014246	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	10q25.3	HSPA12A	rs1014246-T	0.3	6E-6		0.04	unit increase	Illumina [~ 6300000] (imputed)	N
1488	chr10	118487099	118487100	rs1665650	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	10q25.3	HSPA12A	rs1665650-T	0.315	9E-7	(East Asian)	1.13	[1.08-1.19]	Affymetrix, Illumina [1636380] (imputed)	N
1489	chr10	118502054	118502055	rs11592166	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q25.3	HSPA12A	rs11592166-C	0.1955	2E-10		0.2318	[0.16-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1489	chr10	118523932	118523933	rs11197813	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q25.3	HSPA12A	rs11197813-A	0.7026	2E-11		0.1801	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1489	chr10	118525525	118525526	rs1638410	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	10q25.3	HSPA12A	rs1638410-?	NR	9E-6				Affymetrix [753382]	N
1489	chr10	118546045	118546046	rs11197820	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	10q25.3	HSPA12A, ENO4	rs11197820-G	0.58	3E-13		0.0064	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1489	chr10	118546045	118546046	rs11197820	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	10q25.3	HSPA12A	rs11197820-G	0.58	2E-9		0.00522	[0.0035-0.0069] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1489	chr10	118550020	118550021	rs10886012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.3		rs10886012-C	0.5663	4E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1489	chr10	118550762	118550763	rs3095122	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.3		rs3095122-A	0.588	3E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1489	chr10	118550762	118550763	rs3095122	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q25.3	NR	rs3095122-A	0.58758	1E-8		0.0114906	[0.0075-0.0155] unit increase	NR [NR]	N
1489	chr10	118558735	118558736	rs7912336	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q25.3	NR	rs7912336-T	0.5529	1E-8		0.0217	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1489	chr10	118561694	118561695	rs10732812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q25.3	NR	rs10732812-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1489	chr10	118563328	118563329	rs1681739	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	10q25.3	ENO4	rs1681739-T	NR	2E-8		0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1489	chr10	118563328	118563329	rs1681739	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	10q25.3	ENO4	rs1681739-T	NR	1E-6	(EA)	0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1489	chr10	118565500	118565501	rs1681743	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	10q25.3	ENO4	rs1681743-T	0.39	2E-7		0.0069	NR unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1489	chr10	118565500	118565501	rs1681743	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	10q25.3	ENO4	rs1681743-T	0.39	7E-9	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
1489	chr10	118565500	118565501	rs1681743	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	10q25.3	ENO4	rs1681743-T	0.39	4E-6		0.0105	NR mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1489	chr10	118575605	118575606	rs740363	17903304	Larson MG	2007-09-19	BMC Med Genet	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Heart failure	75 cases and 1,272 controls from 310 families	NA	10q25.3	KIAA1598	rs740363-?	NR	9E-6				Affymetrix [70897]	N
1489	chr10	118611334	118611335	rs75165347	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	10q25.3	ENO4, RP11-539I5.2, RP11-539I5.1, KIAA1598	rs75165347-C	NR	4E-6	(mid-sleep time, weekdays)	0.4339	[0.25-0.62] unit decrease	Affymetrix [7141204] (imputed)	N
1489	chr10	118617153	118617153	rs67355556	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs67355556-?	NR	2E-8	(right putamen)			NR [9227495] (imputed)	N
1490	chr10	118623321	118623322	rs9421249	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q25.3	ENO4	rs9421249-C	0.739061	3E-11		0.0104412	[0.0074-0.0135] unit decrease	Affymetrix [12370749]	N
1490	chr10	118624227	118624228	rs9421250	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs9421250-?	NR	2E-8	(left insula)			NR [9227495] (imputed)	N
1490	chr10	118628035	118628036	rs1637571	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs1637571-?	NR	1E-9	(right insula)			NR [9227495] (imputed)	N
1490	chr10	118629276	118629276	rs766267109	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs766267109-?	NR	9E-11	(right putamen)			NR [9227495] (imputed)	N
1490	chr10	118629276	118629276	rs766267109	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs766267109-?	NR	2E-10	(left putamen)			NR [9227495] (imputed)	N
1490	chr10	118638181	118638182	rs12240686	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	10q25.3	ENO4	rs12240686-A	NR	6E-6		0.18	[0.1-0.26] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1490	chr10	118638619	118638620	rs11197841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q25.3	Intergenic	rs11197841-A	0.9394	2E-10	(MTAG)	0.0239	[0.016-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1490	chr10	118638619	118638620	rs11197841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q25.3	Intergenic	rs11197841-A	0.9394	2E-10		0.0261	[0.018-0.034] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1490	chr10	118638619	118638620	rs11197841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.3	Intergenic	rs11197841-A	0.9395	1E-8	(MTAG)	0.0198	[0.013-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1490	chr10	118643669	118643670	rs2257791	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10q25.3		rs2257791-?	NR	1E-22				NR [9705931] (imputed)	N
1490	chr10	118643669	118643670	rs2257791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs2257791-?	NR	5E-8	(right pallidum)			NR [9227495] (imputed)	N
1490	chr10	118643669	118643670	rs2257791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs2257791-?	NR	1E-10	(right putamen)			NR [9227495] (imputed)	N
1490	chr10	118643669	118643670	rs2257791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs2257791-?	NR	1E-10	(left putamen)			NR [9227495] (imputed)	N
1490	chr10	118648840	118648841	rs3781566	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	10q25.3	SHTN1	rs3781566-?		5E-11	(Precentral)			Affymetrix, Illumina [NR] (imputed)	N
1490	chr10	118648840	118648841	rs3781566	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10q25.3	BCL11A	rs3781566-?		1E-12				NR [7428630] (imputed)	N
1490	chr10	118650995	118650996	rs10510025	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10q25.3	NR	rs10510025-?		1E-12				NR [7428630] (imputed)	N
1490	chr10	118650995	118650996	rs10510025	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q25.3	NR	rs10510025-?	NR	3E-8	(right precentral)			NR [9227495] (imputed)	N
1490	chr10	118650995	118650996	rs10510025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q25.3	NR	rs10510025-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1490	chr10	118650995	118650996	rs10510025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q25.3		rs10510025-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1490	chr10	118651881	118651882	rs740600	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q25.3		rs740600-T	0.26	5E-34		12.15	z score increase	Affymetrix [9061022] (imputed)	N
1490	chr10	118651881	118651882	rs740600	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q25.3	NR	rs740600-T	0.2476	1E-17				NR [9056863] (imputed)	N
1490	chr10	118672530	118672531	rs10886017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q25.3	NA	rs10886017-A	0.2413	4E-15		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1490	chr10	118672530	118672531	rs10886017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q25.3	NA	rs10886017-A	0.2413	4E-15		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1490	chr10	118672530	118672531	rs10886017	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q25.3	NR	rs10886017-C	NR	2E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1490	chr10	118672530	118672531	rs10886017	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	10q25.3	PNLIPRP3, PNLIPRP1, PNLIP, C10orf82, PNLIPRP2, HSPA12A, ENO4, VAX1, KCNK18, MIR3663, SLC18A2, PDZD8	rs10886017-A	0.24766788930923	4E-8		0.017172113	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1490	chr10	118676963	118676964	rs4638225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q25.3		rs4638225-A	0.26	6E-113		22.59	z score increase	Affymetrix [9061022] (imputed)	N
1490	chr10	118678711	118678712	rs4752018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q25.3	NR	rs4752018-A	0.231	2E-14		0.00980346	[0.0073-0.0123] unit increase	NR [9732723] (imputed)	N
1490	chr10	118678711	118678712	rs4752018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q25.3	NR	rs4752018-A	0.231	4E-10		0.018853815	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1490	chr10	118689194	118689195	rs719012	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q25.3		rs719012-T	0.26	2E-58		16.13	z score increase	Affymetrix [9061022] (imputed)	N
1490	chr10	118693861	118693862	rs11598817	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q25.3	NR	rs11598817-G	0.2486	1E-17				NR [9056863] (imputed)	N
1490	chr10	118696265	118696266	rs4751614	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q25.3	NR	rs4751614-A	0.7629	9E-13	(Precentral)	20.74429	[15.06-26.43] unit increase	Affymetrix, Illumina [NR]	N
1490	chr10	118696265	118696266	rs4751614	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q25.3	KIAA1598	rs4751614-?		1E-6				Illumina [4322238] (imputed)	N
1490	chr10	118696265	118696266	rs4751614	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q25.3	NR	rs4751614-T	0.235	1E-9		0.010499	[0.0071-0.0139] unit decrease	NR [9732723] (imputed)	N
1490	chr10	118704076	118704077	rs1905544	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	10q25.3	SHTN1	rs1905544-?		1E-11	(Insula)			Affymetrix, Illumina [NR] (imputed)	N
1490	chr10	118715398	118715399	rs7902527	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	10q25.3	NR	rs7902527-A	0.2358	1E-9		6.089	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1491	chr10	118752249	118752250	rs1122688	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q25.3	NR	rs1122688-T	0.7362	3E-17	(Insula)	11.099717	[8.52-13.68] unit decrease	Affymetrix, Illumina [NR]	N
1491	chr10	118757353	118757354	rs11593277	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10q25.3	USP46, ERVMER34-1, RASL11B, SCFD2	rs11593277-?		8E-12				NR [7428630] (imputed)	N
1491	chr10	118767563	118767564	rs10886021	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	10q25.3	NR	rs10886021-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1491	chr10	118776305	118776306	rs12769006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q25.3	ENO4, KIAA1598, VAX1	rs12769006-?		2E-25				NR [7428630] (imputed)	N
1491	chr10	118777370	118777371	rs10787738	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q25.3		rs10787738-C	0.738	3E-19		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
1491	chr10	118777907	118777907	rs56130739	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	10q25.3	NR	rs56130739-?		1E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1491	chr10	118777997	118777998	rs10749233	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q25.3	NR	rs10749233-?	NR	8E-6	(male)	0.13728	[0.077-0.197] unit decrease	Affymetrix [7794483] (imputed)	N
1491	chr10	118777997	118777998	rs10749233	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q25.3	NR	rs10749233-?	NR	4E-8		0.13779	[0.089-0.187] unit decrease	Affymetrix [7794483] (imputed)	N
1491	chr10	118778078	118778079	rs10886022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q25.3		rs10886022-C	NR	3E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1491	chr10	118778078	118778079	rs10886022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q25.3		rs10886022-C	NR	1E-10		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1491	chr10	118778078	118778079	rs10886022	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q25.3	SHTN1	rs10886022-A	0.236288	5E-13		0.0178902	[0.013-0.023] unit decrease	NR [16516521] (imputed)	N
1491	chr10	118778078	118778079	rs10886022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q25.3		rs10886022-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1491	chr10	118813876	118813877	rs9787575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.3		rs9787575-T	0.1547	6E-10	(conditional-joint)	0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1491	chr10	118817066	118817067	rs1898349	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	10q25.3	VAX1	rs1898349-?	NR	1E-7	(Asian)	1.35	[1.21-1.49]	Illumina [6090031] (imputed)	N
1491	chr10	118827559	118827560	rs7078160	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	10q25.3	NR	rs7078160-?	NR	9E-9		0.3383	[0.22-0.45] unit increase	NR [7618724] (imputed)	N
1491	chr10	118827559	118827560	rs7078160	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	10q25.3		rs7078160-?		4E-7				Illumina [NR]	N
1491	chr10	118827559	118827560	rs7078160	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	10q25.3	VAX1	rs7078160-A	NR	3E-10		1.29	[1.19-1.39]	Affymetrix [842556]	N
1491	chr10	118827559	118827560	rs7078160	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	10q25.3	NR	rs7078160-A	NR	6E-10	(Meta-All, NSCLP)			NR [497084]	N
1491	chr10	118827559	118827560	rs7078160	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	10q25.3	NR	rs7078160-A	NR	4E-11	(Meta-All, NSCL/P)	1.383	[1.213-1.576]	NR [497084]	N
1491	chr10	118827559	118827560	rs7078160	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	10q25.3	KIAA1598, VAX1	rs7078160-A	0.16	2E-8		1.36	[1.21-1.53]	Illumina [521288]	N
1491	chr10	118833262	118833263	rs3847479	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	10q25.3	NA	rs3847479-A	0.1744	4E-10		0.002	[0.0012-0.0028] unit decrease	Affymetrix [15275733] (imputed)	N
1491	chr10	118834990	118834991	rs4752028	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	10q25.3	VAX1	rs4752028-C	0.334	3E-10		1.328	NR	Illumina [at least 870261] (imputed)	N
1491	chr10	118837989	118837990	rs1865955	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q25.3		rs1865955-T	0.8244	4E-11		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1491	chr10	118843531	118843532	rs11528300	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	10q25.3	NR	rs11528300-?		5E-6		1.8	[1.40-2.33]	Illumina [539473] (imputed)	N
1491	chr10	118846293	118846294	rs10886040	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	10q25.3	VAX1	rs10886040-?	NR	8E-11		1.26	[1.14-1.39] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1491	chr10	118846293	118846294	rs10886040	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	10q25.3	VAX1	rs10886040-?	NR	9E-11		1.31	[1.17-1.46] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1491	chr10	118846293	118846294	rs10886040	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	10q25.3	VAX1	rs10886040-?	NR	1E-7	(Asian)	1.39	[1.24-1.56]	Illumina [6090031] (imputed)	N
1491	chr10	118852467	118852468	rs6585426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q25.3	Intergenic	rs6585426-T	0.8234	2E-9	(MTAG)	0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1491	chr10	118852467	118852468	rs6585426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q25.3	Intergenic	rs6585426-T	0.8244	3E-10	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1491	chr10	118855240	118855241	rs1947798	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	10q25.3	NR	rs1947798-C	0.186879	1E-10		0.058182895	[0.04-0.076] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1491	chr10	118862419	118862420	rs10510026	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q25.3	NR	rs10510026-?	NR	9E-7		1.82	[1.67-1.97]	Illumina [539000] (imputed)	N
1491	chr10	118862419	118862420	rs10510026	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	10q25.3	NR	rs10510026-?	NR	1E-6		1.78	[1.65-1.93]	Illumina [539000] (imputed)	N
1491	chr10	118863254	118863255	rs140645847	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	10q25.3	SHTN1	rs140645847-T	NR	3E-8	(LPE(20:4;0))	0.32	[0.21-0.43] unit decrease	Illumina [~ 9300000] (imputed)	N
1492	chr10	118893230	118893231	rs6585429	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	10q25.3	VAX1	rs6585429-A	0.1877	1E-11		0.084	[0.06-0.108] unit decrease	NR [9744772] (imputed)	N
1492	chr10	118893230	118893231	rs6585429	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	10q25.3	VAX1	rs6585429-A	0.56	7E-13		1.2345679	[NR]	Illumina [803202]	N
1492	chr10	119004994	119004995	rs363334	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q25.3	SLC18A2	rs363334-C	0.806949	6E-11	(1-methylhistamine)	0.186	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1494	chr10	119145773	119145774	rs7900191	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.11	PDZD8, EMX2	rs7900191-C	0.5965	5E-8		1.018876		Affymetrix [11880941] (imputed)	N
1494	chr10	119173944	119173945	rs1638665	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q26.11	NR	rs1638665-?	NR	1E-9	(AA)	506.92	[490.87-522.97]	Illumina [905956]	N
1494	chr10	119181870	119181871	rs181500	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	10q26.11	intergenic	rs181500-T	NR	5E-6		1.24	[NR]	Affymetrix [745006]	N
1494	chr10	119192317	119192318	rs2532655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q26.11	NR	rs2532655-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1494	chr10	119192317	119192318	rs2532655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q26.11		rs2532655-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1494	chr10	119193152	119193153	rs758569	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	10q26.11	EMX2OS	rs758569-A	0.3616	4E-6		0.8017	[NR] unit increase	Illumina [1216074] (imputed)	N
1494	chr10	119210374	119210375	rs6585436	22683750	Sinner MF	2012-06-06	Heart Rhythm	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Early cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	10q26.11	PDZD8, EMX2	rs6585436-C	0.983	6E-6		2.08	[1.52-2.86]	Affymetrix, Illumina [2523555] (imputed)	N
1494	chr10	119211880	119211881	rs2532643	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	10q26.11		rs2532643-C	NR	9E-7	(GLM)	2.4204	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1494	chr10	119211880	119211881	rs2532643	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	10q26.11		rs2532643-?	NR	1E-6	(MLM)	0.4471507	[0.27-0.63] unit increase	Illumina [~ 9000000] (imputed)	N
1494	chr10	119227341	119227342	rs4752066	23541324	Li X	2013-03-27	J Allergy Clin Immunol	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		10q26.11	EMX2	rs4752066-T	0.10	6E-7	(ppFEV1)	0.3	[NR] unit decrease	Illumina [369771]	N
1494	chr10	119253460	119253460	rs145277525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.11	EMX2OS	rs145277525-AAAAC	NR	2E-9		0.0189609	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1494	chr10	119253460	119253460	rs145277525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.11	EMX2OS	rs145277525-AAAAC	NR	2E-9		0.0191834	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1494	chr10	119253737	119253738	rs11198013	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	10q26.11	NR	rs11198013-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1494	chr10	119260224	119260225	rs1981660	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	10q26.11	NR	rs1981660-?	NR	4E-9				Illumina [at least 7383741] (imputed)	N
1494	chr10	119262089	119262090	rs740739	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.11		rs740739-A	0.42	1E-27		10.92	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr10	119262089	119262090	rs740739	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.11		rs740739-A	0.42	1E-12		7.08	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr10	119262089	119262090	rs740739	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.11	NR	rs740739-A	0.405	1E-11				NR [9056863] (imputed)	N
1494	chr10	119262089	119262090	rs740739	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	10q26.11		rs740739-?	NR	5E-11				NR [9705931] (imputed)	N
1494	chr10	119262364	119262365	rs2901157	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.11	NR	rs2901157-G	0.1133	2E-6	(EA)	0.0474	[0.028-0.067] unit decrease	Illumina [~ 11800000] (imputed)	N
1494	chr10	119262632	119262633	rs758570	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.11		rs758570-C	0.41	1E-13		7.44	z score increase	Affymetrix [9061022] (imputed)	N
1494	chr10	119262632	119262633	rs758570	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.11	NR	rs758570-C	0.4213	3E-13				NR [9056863] (imputed)	N
1495	chr10	119276360	119276361	rs242983	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	10q26.11		rs242983-A	0.133311674	2E-20				Illumina [7417619] (imputed)	N
1495	chr10	119281242	119281243	rs242980	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 1)	2,595 Tanzanian ancestry individuals	NA	10q26.11		rs242980-?	NR	2E-11				Illumina [NR] (imputed)	N
1495	chr10	119283707	119283708	rs10886094	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	10q26.11	PDZD8, EMX2	rs10886094-?	NR	1E-28		1.134	[1.109-1.159]	Illumina [13729857] (imputed)	N
1495	chr10	119284407	119284408	rs12570134	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Double-edged eyelids	2,069 Japanese ancestry female cases, 3,545 Japanese ancestry female controls	NA	10q26.11	EMX2OS, EMX2	rs12570134-T	0.73	8E-15		1.4084507	[1.3-1.54]	Affymetrix [536506]	N
1495	chr10	119291648	119291649	rs80244109	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EMX2OS	rs80244109-?	NR	5E-10	(male)	2.85057	[NR] unit increase	Affymetrix [NR] (imputed)	N
1495	chr10	119294120	119294121	rs1860399	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.11		rs1860399-?	NR	3E-8				NR [NR]	N
1495	chr10	119298360	119298361	rs703408	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.11		rs703408-?	NR	4E-8				NR [NR]	N
1495	chr10	119298360	119298361	rs703408	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.11		rs703408-?	NR	2E-10				NR [NR]	N
1495	chr10	119298360	119298361	rs703408	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.11		rs703408-?	NR	3E-8				NR [NR]	N
1495	chr10	119298686	119298687	rs703409	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	10q26.11	EMX2OS	rs703409-C	0.2773	2E-6		0.012319703	[0.0065-0.0181] unit increase	NR [9417325] (imputed)	N
1495	chr10	119298686	119298687	rs703409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	10q26.11		rs703409-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1495	chr10	119299354	119299355	rs34306087	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q26.11	NR	rs34306087-T	0.322408	1E-11		0.0226074	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
1495	chr10	119299578	119299579	rs703410	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	10q26.11	NR	rs703410-A	0.258446998925333	2E-10		0.006676009	[0.0046-0.0087] unit decrease	NR [NR]	N
1495	chr10	119299578	119299579	rs703410	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	10q26.11	NR	rs703410-A	0.258446998925333	2E-9		0.008092365	[0.0054-0.0107] unit decrease	NR [NR]	N
1495	chr10	119299578	119299579	rs703410	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	10q26.11	NR	rs703410-A	0.258446998925333	1E-9		0.010546926	[0.0071-0.014] unit decrease	NR [NR]	N
1495	chr10	119299578	119299579	rs703410	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	10q26.11	NR	rs703410-A	0.258446998925333	9E-9		0.006583087	[0.0043-0.0088] unit decrease	NR [NR]	N
1495	chr10	119299578	119299579	rs703410	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	10q26.11	NR	rs703410-A	0.2625	2E-8		0.0118	[0.0077-0.0159] unit increase	Illumina [NR] (imputed)	N
1495	chr10	119299578	119299579	rs703410	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	10q26.11	NR	rs703410-A	0.2525	2E-8		0.0181	[0.012-0.024] unit decrease	Illumina [NR] (imputed)	N
1495	chr10	119301702	119301703	rs860626	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	10q26.11	NR	rs860626-T	NR	1E-9		6.056	z score increase	Affymetrix [10847151] (imputed)	N
1495	chr10	119301702	119301703	rs860626	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	10q26.11	PDZD8	rs860626-T	0.297635	2E-9		5.99	z score increase	NR [10847151] (imputed)	N
1495	chr10	119301702	119301703	rs860626	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	10q26.11	EMX2	rs860626-T	0.7023699999999999	2E-10		6.328	z score increase	Illumina [18485882] (imputed)	N
1495	chr10	119303517	119303518	rs436609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.11	NR	rs436609-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1495	chr10	119315824	119315825	rs4751628	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q26.11	NR	rs4751628-G	0.36	2E-13		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1495	chr10	119315824	119315825	rs4751628	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q26.11	NR	rs4751628-G	0.36	5E-8				Affymetrix [2446094] (imputed)	N
1495	chr10	119317803	119317804	rs4752078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q26.11		rs4752078-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1495	chr10	119319391	119319392	rs11198034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.11	CTA-109P11.1	rs11198034-C	NR	5E-10		0.0181371	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1495	chr10	119319391	119319392	rs11198034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.11	CTA-109P11.1	rs11198034-C	NR	3E-10		0.0183205	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1495	chr10	119321313	119321314	rs2286628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q26.11	CTA-109P11.1	rs2286628-T	NR	5E-8		0.0160409	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1495	chr10	119321448	119321449	rs2255424	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q26.11	NR	rs2255424-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1495	chr10	119322804	119322805	rs111164520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q26.11		rs111164520-A	NR	6E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1495	chr10	119336745	119336746	rs384627	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.11	EMX2	rs384627-A	0.0060	5E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1495	chr10	119345925	119345926	rs1415425	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Double-edged eyelids	2,069 Japanese ancestry female cases, 3,545 Japanese ancestry female controls	NA	10q26.11	EMX2, EMX2OS	rs1415425-A	0.52	2E-7		1.2345679	[1.14-1.33]	Affymetrix [536506]	N
1495	chr10	119347240	119347241	rs7077608	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	10q26.11	NR	rs7077608-A		1E-6				NR [525577]	N
1495	chr10	119379655	119379656	rs181654	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	10q26.11	EMX2	rs181654-?	0.72	1E-7	(no asthma)	1.23		Affymetrix, Illumina [up to 2500000] (imputed)	N
1495	chr10	119382454	119382455	rs181662	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	10q26.11	EMX2	rs181662-G	0.3279	8E-6		0.2253	[0.13-0.32] unit increase	Illumina [533687]	N
1495	chr10	119386121	119386122	rs181669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q26.11		rs181669-C	NR	2E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1495	chr10	119386121	119386122	rs181669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q26.11		rs181669-C	NR	1E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1495	chr10	119386121	119386122	rs181669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q26.11		rs181669-C	0.536924	4E-9		0.013063137	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1495	chr10	119386121	119386122	rs181669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.11		rs181669-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1495	chr10	119388527	119388528	rs181673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q26.11		rs181673-C	NR	2E-21		0.0173	[0.014-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1495	chr10	119388527	119388528	rs181673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q26.11	NR	rs181673-C	NR	1E-19		0.0216	[0.017-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1495	chr10	119388527	119388528	rs181673	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q26.11	NR	rs181673-A	0.46	9E-20		0.0166	[0.013-0.02] unit decrease	NR [NR]	N
1495	chr10	119400060	119400061	rs181679	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q26.11	NR	rs181679-A	0.409	6E-7		0.00551935	[0.0034-0.0077] unit increase	NR [9732723] (imputed)	N
1496	chr10	119413333	119413334	rs117254579	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	10q26.11	Intergenic	rs117254579-?	NR	6E-6		1.19	[1.10-1.28]	Affymetrix, Illumina [39235000] (imputed)	N
1496	chr10	119418103	119418104	rs2184898	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	10q26.11	intergenic	rs2184898-A	0.327	3E-6		1.33	[1.18-1.50]	Illumina [948658]	N
1496	chr10	119443758	119443759	rs855965	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Ovarian disease with few adhesions	1,686 European ancestry cases, 7,060 European ancestry controls.		10q26.11	EMX2	rs855965-?	NR	4E-7		1.2345679	[1.14-1.35]	Illumina [NR] (imputed)	N
1496	chr10	119478640	119478641	rs4752101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	10q26.11		rs4752101-C	0.504408	2E-10		0.0222248	[0.015-0.029] unit decrease	Illumina [13475706] (imputed)	N
1496	chr10	119479360	119479361	rs7919329	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	10q26.11		rs7919329-C	0.42	5E-10		0.0369	increase	NR [7104359] (imputed)	N
1496	chr10	119480577	119480578	rs10886117	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q26.11	NR	rs10886117-A	0.17	1E-13		0.0185	[0.014-0.023] unit increase	NR [NR]	N
1496	chr10	119480577	119480578	rs10886117	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q26.11	EMX2	rs10886117-A	0.2621	2E-12		0.0278	[0.02-0.036] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1496	chr10	119480577	119480578	rs10886117	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q26.11	EMX2	rs10886117-A	0.1666	7E-6		0.024367	[0.014-0.035] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1496	chr10	119480577	119480578	rs10886117	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q26.11	NR	rs10886117-A	0.2852	2E-6	(men)	0.028	[0.016-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1496	chr10	119480577	119480578	rs10886117	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	10q26.11	NR	rs10886117-A	0.265	6E-7	(women)	0.0278	[0.017-0.039] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1496	chr10	119482302	119482303	rs1886603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	10q26.11	NR	rs1886603-A	NR	3E-13		0.0243	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1496	chr10	119482302	119482303	rs1886603	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	10q26.11	EMX2, RAB11FIP2	rs1886603-A	0.374	3E-11	(Japanese)	0.027	[0.019-0.035] unit increase	Illumina [5864938] (imputed)	N
1496	chr10	119482302	119482303	rs1886603	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	10q26.11	EMX2, RAB11FIP2	rs1886603-?	NR	2E-9		0.02607	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1496	chr10	119482636	119482637	rs1886605	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q26.11	EMX2	rs1886605-A	0.522	2E-8	(East Asian)	0.035	[0.023-0.047] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1496	chr10	119483868	119483869	rs12264978	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	10q26.11	EMX2-RAB11FIP2	rs12264978-T	0.015	4E-6		2.54	[2.14-2.94]	Affymetrix, Illumina [8000000] (imputed)	N
1496	chr10	119489574	119489575	rs2147744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.11	NR	rs2147744-?	NR	8E-34				Affymetrix [NR]	N
1496	chr10	119532419	119532420	rs1925281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	10q26.11		rs1925281-G	NR	2E-9		0.1233	[0.083-0.163] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1496	chr10	119533255	119533256	rs1925282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q26.11	NR	rs1925282-G	0.691217	2E-10		0.012779	[0.0089-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1496	chr10	119533756	119533757	rs7088969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q26.11		rs7088969-C	0.690287	1E-10		0.015327026	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1496	chr10	119533756	119533757	rs7088969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.11		rs7088969-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1496	chr10	119533756	119533757	rs7088969	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	10q26.11	EMX2	rs7088969-T	NR	3E-6		8.7002	[5.11-12.29] unit decrease	Illumina [6097251] (imputed)	N
1496	chr10	119533756	119533757	rs7088969	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	10q26.11	EMX2, RAB11FIP2	rs7088969-T	0.312	3E-8	(n-6 PUFA)			Affymetrix [590000]	N
1497	chr10	119561423	119561424	rs10886142	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	10q26.11	RAB11FIP2	rs10886142-T	0.49	1E-9		1.2	[1.13-1.27]	Affymetrix [536506]	N
1497	chr10	119564142	119564143	rs11198112	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	10q26.11	intergenic	rs11198112-T	0.097	8E-26		1.49	unit decrease	Illumina [366864] (imputed)	N
1497	chr10	119564142	119564143	rs11198112	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	10q26.11	intergenic	rs11198112-T	0.097	1E-37		2.3	unit decrease	Illumina [366864] (imputed)	N
1497	chr10	119564142	119564143	rs11198112	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	10q26.11	EMX2	rs11198112-?	NR	2E-8				Illumina [181139] (imputed)	N
1497	chr10	119564142	119564143	rs11198112	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	10q26.11	EMX2	rs11198112-?	NR	2E-10				Illumina [8896142] (imputed)	N
1497	chr10	119564142	119564143	rs11198112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	10q26.11		rs11198112-?	NR	4E-26				NR [~ 8900000] (imputed)	N
1497	chr10	119565537	119565538	rs10444039	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	10q26.11	RAB11FIP2	rs10444039-C	0.912	6E-21		1.6666665	[1.49-1.85]	Affymetrix [536506]	N
1497	chr10	119570120	119570121	rs1925258	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q26.11	NR	rs1925258-A	0.7	6E-10		0.0124	[0.0084-0.0164] unit decrease	NR [NR]	N
1497	chr10	119572402	119572403	rs35563099	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	10q26.11		rs35563099-C	0.835366	9E-7		1.131	NR	Affymetrix [7846216] (imputed)	N
1497	chr10	119572402	119572403	rs35563099	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Age spots	3,815 Japanese ancestry female cases, 7,438 Japanese ancestry female controls	NA	10q26.11	RAB11FIP2	rs35563099-C	0.913	1E-6		1.2820514	[1.16-1.43]	Affymetrix [536506]	N
1497	chr10	119572402	119572403	rs35563099	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	10q26.11	EMX2	rs35563099-T	NR	7E-24		0.121	[0.047-0.195] unit decrease	Affymetrix [8351141] (imputed)	N
1497	chr10	119582801	119582802	rs4752116	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	10q26.11	RAB11FIP2	rs4752116-C	0.79	3E-9		1.2345679	[1.15-1.32]	Affymetrix [536506]	N
1497	chr10	119589312	119589313	rs11198131	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q26.11		rs11198131-C	0.093586	9E-6		0.051582	[0.029-0.074] unit decrease	Affymetrix [15580782] (imputed)	N
1497	chr10	119602423	119602424	rs61866017	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Age spots	3,815 Japanese ancestry female cases, 7,438 Japanese ancestry female controls	NA	10q26.11	RAB11FIP2	rs61866017-G	0.84	1E-9		1.2820514	[1.18-1.37]	Affymetrix [536506]	N
1497	chr10	119604937	119604938	rs1925265	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q26.11	intergenic	rs1925265-G		5E-6		0.2912	unit decrease	Illumina [5767231] (imputed)	N
1497	chr10	119613609	119613610	rs10886159	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	10q26.11	EMX2OS, RAB11FIP2, EMX2	rs10886159-C		7E-7				Illumina [944512] (imputed)	N
1497	chr10	119646216	119646217	rs2255624	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Retinopathy x type 2 diabetes interaction	13,881 European ancestry cases, 123,538 European ancestry controls	NA	10q26.11	SLC18A2	rs2255624-G	0.032	2E-8				Affymetrix [at least 723305] (imputed)	N
1497	chr10	119647255	119647256	rs17642749	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	10q26.11	RAB11FIP2	rs17642749-G	0.086	4E-7	(African American/African Caribbean, male)	2.97	[1.90-4.63]	Affymetrix, Illumina [~ 2100000] (imputed)	N
1498	chr10	119731280	119731281	rs1419138	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	10q26.11		rs1419138-C	0.05	4E-6		1.81		Illumina [10258281] (imputed)	N
1498	chr10	119738983	119738984	rs34988394	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 62)	3,566 European ancestry individuals	4,680 European ancestry individuals	10q26.11		rs34988394-T	0.202982732	5E-14				Illumina [7417619] (imputed)	N
1498	chr10	119776392	119776393	rs60424173	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Upper cheek morphology	2,659 Han Chinese ancestry individuals	NA	10q26.11	NR	rs60424173-?		2E-8				Illumina [4757938] (imputed)	N
1499	chr10	119875910	119875911	rs75388473	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CASC2	rs75388473-?	NR	5E-8	(male)	1.71676	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1500	chr10	120018244	120018245	rs558358405	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.11		rs558358405-T	0.01	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
1500	chr10	120018244	120018245	rs558358405	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.11	NR	rs558358405-T	0.0054	3E-10				NR [9056863] (imputed)	N
1500	chr10	120025967	120025968	rs58177382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.11		rs58177382-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1500	chr10	120028681	120028682	rs7905738	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.11		rs7905738-C	0.39	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
1500	chr10	120044431	120044432	rs55744556	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	10q26.11		rs55744556-?	NR	1E-5		0.08	[0.047-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1500	chr10	120053822	120053823	rs151010944	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10q26.11	FAM204A	rs151010944-A	NR	1E-9		1.29293	[0.88-1.71] unit increase	Illumina [NR] (imputed)	N
1501	chr10	120175018	120175019	rs4752158	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10q26.11	NA	rs4752158-T		3E-9		0.0135335	[0.0091-0.018] unit increase	Illumina [13288253] (imputed)	N
1502	chr10	120211566	120211567	rs192211484	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q26.11	intergenic	rs192211484-?	NR	9E-6		0.343	[0.15-0.54] unit decrease	Illumina [at least 13000000] (imputed)	N
1502	chr10	120222995	120222996	rs73418461	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q26.11	NR	rs73418461-G		2E-6		0.2492	[0.15-0.35] SD units increase	NR [10700000] (imputed)	N
1502	chr10	120242186	120242187	rs2420477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q26.11	PRLHR	rs2420477-T	0.470583	3E-8		0.0112016	[0.0073-0.0151] unit increase	Affymetrix [NR] (imputed)	N
1502	chr10	120248712	120248713	rs2095567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q26.11		rs2095567-T	NR	5E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1502	chr10	120278393	120278394	rs75387636	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q26.11	PRLHR	rs75387636-G	0.958457	2E-9		0.0212162	[0.014-0.028] unit decrease	Affymetrix [12370749]	N
1502	chr10	120278943	120278944	rs12413624	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	10q26.11	PRLHR	rs12413624-T	0.37	5E-11		1.23	[1.16-1.31]	Affymetrix [666141]	N
1502	chr10	120292311	120292312	rs645662	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.11	NR	rs645662-?	NR	1E-26				Affymetrix [NR]	N
1503	chr10	120367526	120367527	rs185549034	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	10q26.11	NR	rs185549034-T	NR	8E-6		0.4371	[0.25-0.63] unit decrease	Illumina [11133794] (imputed)	N
1503	chr10	120369034	120369035	rs59080243	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.11	PRLHR	rs59080243-T	0.9468	5E-6		0.0656	[0.038-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1503	chr10	120410383	120410384	rs577584690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.11	NR	rs577584690-G	0.997358	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
1503	chr10	120422763	120422764	rs10736269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q26.11		rs10736269-C	NR	2E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1503	chr10	120424052	120424053	rs749091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.11	CACUL1	rs749091-C	0.4425	1E-6		0.0313	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1503	chr10	120427958	120427959	rs1247121	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.11	intergenic	rs1247121-A	0.4337	2E-20		0.0177	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1503	chr10	120427958	120427959	rs1247121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.11		rs1247121-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1504	chr10	120465795	120465796	rs12414412	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	10q26.11	CACUL1	rs12414412-?		4E-13				Illumina [9499600] (imputed)	N
1504	chr10	120486023	120486024	rs9787632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.11		rs9787632-G	NR	6E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1504	chr10	120500995	120500996	rs12778436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q26.11		rs12778436-A	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1504	chr10	120504789	120504790	rs28836792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.11		rs28836792-C	NR	1E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1504	chr10	120505595	120505596	rs111434562	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	10q26.11	NR	rs111434562-A	NR	8E-6	(EA)	0.1358	[0.076-0.196] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1504	chr10	120519943	120519944	rs12571735	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	10q26.11	CACUL1, NANOS1	rs12571735-T	0.34	3E-8		5.55	z-score increase	Affymetrix [4311822] (imputed)	N
1504	chr10	120577380	120577381	rs532515683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q26.11	NR	rs532515683-A	0.994129	3E-14		0.597262	[0.44-0.75] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1505	chr10	120596385	120596386	rs6585514	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs6585514-A	0.395	6E-7				Illumina [622468]	N
1505	chr10	120603341	120603342	rs4642993	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs4642993-A	0.455	9E-6				Illumina [622468]	N
1505	chr10	120613995	120613996	rs4752217	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs4752217-T	0.479	3E-6	(women)			Illumina [622468]	N
1505	chr10	120615560	120615561	rs4752219	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA		intergenic	rs4752219-T	0.386	4E-6	(women)			Illumina [622468]	N
1505	chr10	120626561	120626562	rs10510050	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs10510050-A	0.482	9E-6	(women)			Illumina [622468]	N
1505	chr10	120643885	120643886	rs190045766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.11	Intergenic	rs190045766-T	0.999	3E-6	(AA)	0.429	unit increase	Illumina [NR] (imputed)	N
1505	chr10	120645819	120645820	rs7908018	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA		intergenic	rs7908018-A	0.42	7E-6	(women)			Illumina [622468]	N
1505	chr10	120647145	120647146	rs1071895	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs1071895-A	0.447	3E-6	(women)			Illumina [622468]	N
1505	chr10	120648725	120648726	rs4751680	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA		intergenic	rs4751680-G	0.352	5E-6	(women)			Illumina [622468]	N
1505	chr10	120649971	120649972	rs57602752	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence	2,080 European ancestry cases, 6,435 European ancestry controls	781 European ancestry cases, 1,591 European ancestry controls, 896 African American cases, 1,905 African American controls	10q26.11	RP11-215A21.1	rs57602752-A	NR	1E-7		0.2866	[0.18-0.39] unit decrease	Illumina [at least 4916924] (imputed)	N
1505	chr10	120659351	120659352	rs150525973	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	10q26.11	NR	120659352-T		1E-6		0.1156	[0.069-0.162] unit increase	Illumina [at least 4916924] (imputed)	N
1505	chr10	120690831	120690832	rs10886342	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	10q26.11	intergenic	rs10886342-A	0.277	4E-6				Illumina [622468]	N
1505	chr10	120699410	120699411	rs117717236	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	10q26.11	NR	rs117717236-?		5E-6		27.4409	[15.81-39.07] unit decrease	NR [NR] (imputed)	N
1505	chr10	120702069	120702070	rs116956449	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	10q26.11		rs116956449-?	NR	5E-6		2.343	[1.628-3.372]	Affymetrix [7975321] (imputed)	N
1506	chr10	120744294	120744295	rs10886358	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q26.11	Intergenic	rs10886358-G	0.547	3E-6	(AA)	0.03	NR unit increase	Illumina [NR] (imputed)	N
1506	chr10	120744909	120744910	rs11198708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q26.11	Intergenic	rs11198708-A	0.555	5E-6	(AA)	0.029	NR unit increase	Illumina [NR] (imputed)	N
1506	chr10	120744940	120744941	rs11198709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q26.11	Intergenic	rs11198709-C	0.554	4E-6	(AA)	0.03	NR unit increase	Illumina [NR] (imputed)	N
1506	chr10	120744954	120744955	rs562188	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	10q26.11	Intergenic	rs562188-G	0.594	1E-7	(AA)	0.033	NR unit decrease	Illumina [NR] (imputed)	N
1506	chr10	120780214	120780215	rs10886366	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	10q26.11	NR	rs10886366-G		6E-6		0.0815	[0.046-0.117] SD units increase	NR [10700000] (imputed)	N
1506	chr10	120784993	120784994	rs494526	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	10q26.11	NANOS1, EIF3A, SNORA19, FAM45A	rs494526-?		7E-6		1.2159534	[1.12-1.30]	Illumina [9389922] (imputed)	N
1506	chr10	120789262	120789263	rs186808650	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	10q26.11	NANOS1, EIF3A, SNORA19, FAM45A	rs186808650-?		6E-6		1.2647022	[1.15-1.40]	Illumina [9389922] (imputed)	N
1506	chr10	120803787	120803788	rs658352	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	10q26.11	NANOS1, FAM45B, EIF3A	rs658352-T	NR	4E-12		0.176	[0.13-0.22] unit increase	Affymetrix [7701190] (imputed)	N
1506	chr10	120822032	120822033	rs2152240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	10q26.11	EIF3A	rs2152240-G	0.434351	8E-11		0.014792629	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1506	chr10	120822905	120822906	rs76473913	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	10q26.11	EIF3A	rs76473913-C	0.11	6E-6		1.5		Illumina [8974355] (imputed)	N
1506	chr10	120823968	120823969	rs10787903	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	10q26.11	EIF3A, SNORA19, NANOS1, FAM45A	rs10787903-?		2E-7		1.2575	[1.16-1.36]	Illumina [9389922] (imputed)	N
1506	chr10	120834870	120834871	rs117619580	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	10q26.11	EIF3A, SNORA19, FAM45A, NANOS1	rs117619580-?		7E-6		1.7531557	[1.39-2.20]	Illumina [9389922] (imputed)	N
1507	chr10	120894015	120894016	rs2420495	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	10q26.11	FAM45A, SFXN4, PRDX3, EIF3A	rs2420495-?		6E-6		1.2197	[1.12-1.32]	Illumina [9389922] (imputed)	N
1507	chr10	120897062	120897063	rs4751697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.11	NR	rs4751697-T	0.593897	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
1507	chr10	120897062	120897063	rs4751697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q26.11	NR	rs4751697-T	0.567685	1E-11		0.013187	[0.0094-0.017] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1507	chr10	120897478	120897479	rs34179455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q26.11	NR	rs34179455-G	0.568293	9E-11		0.012067	[0.0084-0.0157] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1507	chr10	120907173	120907173	rs150807690	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	10q26.11	SFXN4	rs150807690-?	NR	1E-7		0.82	[1.18-1.27]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1507	chr10	120923104	120923105	rs7088103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q26.11	SFXN4	rs7088103-G	NR	2E-8		0.016436	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1507	chr10	120965340	120965341	rs11198821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.11		rs11198821-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1507	chr10	120966338	120966339	rs1397615	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.11	GRK5	rs1397615-A	0.044	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1508	chr10	120980336	120980336	rs546082321	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	10q26.11	NR	rs546082321-CA	0.4009	3E-8		0.001373	[0.00089-0.00186] unit decrease	Affymetrix [NR] (imputed)	N
1508	chr10	121006226	121006227	rs17098586	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA		GRK5	rs17098586-?	0.07534	9E-6		7.013	[NR]	Affymetrix [559609]	N
1508	chr10	121010255	121010256	rs10886430	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL22	5,350 Icelandic ancestry individuals	NA	10q26.11		rs10886430-G	0.1297	3E-14		0.206496	[0.15-0.26] unit decrease	Illumina [7506463] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	10q26.11		rs10886430-G	0.1297	4E-69		0.488833	[0.43-0.54] unit decrease	Illumina [7506463] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q26.11		rs10886430-G	NR	8E-17		0.0295	[0.023-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	10q26.11		rs10886430-A	0.873	6E-12				Affymetrix [10369434] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	10q26.11		rs10886430-A	0.873	4E-8				Affymetrix [10369434] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Thymus and reactivation regulated chemokine levels	8,318 European ancestry individuals	NA	10q26.11	GRK5	rs10886430-A	0.11	1E-75		0.33	[0.29-0.37] unit increase	Illumina [~ 9000000] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q26.11	GRK5	rs10886430-G	0.126435	9E-31		0.039973877	[0.033-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	10q26.11	GRK5	rs10886430-G	0.126416	7E-15		0.026945759	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q26.11	GRK5	rs10886430-G	0.126431	1E-43		0.04782744	[0.041-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	10q26.11	NR	rs10886430-G	0.125245	3E-16		0.023557	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.11	NR	rs10886430-A	0.876613	2E-56				Affymetrix, Illumina [17210439] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q26.11	NR	rs10886430-A	0.87263	3E-59		0.047783	[0.042-0.054] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	32649856	Rodriguez BAT	2020-07-04	Am J Hum Genet	A Platelet Function Modulator of Thrombin Activation Is Causally Linked to Cardiovascular Disease and Affects PAR4 Receptor Signaling.	Thrombin-induced platelet aggregation	1,184 European ancestry individuals	NA	10q26.11	GRK5	rs10886430-G	0.136	3E-42		0.7	[0.6-0.8] unit increase	Affymetrix [7751469] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	10q26.11	GRK5	rs10886430-G	0.1202	2E-18		1.1371214	[1.1-1.17]	Affymetrix [up to 34000000] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	10q26.11	GRK5	rs10886430-G	NR	2E-12		1.12	[1.09-1.16]	Affymetrix, Illumina [12923718] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	10q26.11	NR	rs10886430-?	NR	1E-12		0.113	[0.082-0.144] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	10q26.11	GRK5	rs10886430-G	0.1289	7E-14		0.0416716	[0.031-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1508	chr10	121010255	121010256	rs10886430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q26.11	GRK5	rs10886430-G	0.1289	7E-18		0.04829004	[0.037-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1508	chr10	121018063	121018064	rs72834178	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q26.11	NR	rs72834178-A	0.9835	9E-6		0.059893187	[0.033-0.086] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1508	chr10	121026711	121026712	rs7071131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q26.11	GRK5	rs7071131-G	0.494882	6E-15		0.017266568	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr10	121026711	121026712	rs7071131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q26.11	NR	rs7071131-G	0.495115	4E-16		0.016035	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1508	chr10	121049818	121049819	rs11198861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q26.11		rs11198861-A	NR	7E-17		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1508	chr10	121049818	121049819	rs11198861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q26.11	GRK5	rs11198861-A	0.51205	5E-11		0.014580938	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr10	121049818	121049819	rs11198861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q26.11	GRK5	rs11198861-A	0.512032	2E-12		0.015661396	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1508	chr10	121049818	121049819	rs11198861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.11	NR	rs11198861-A	0.541498	4E-14				Affymetrix, Illumina [23472807] (imputed)	N
1508	chr10	121053179	121053180	rs59348252	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	10q26.11		rs59348252-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1508	chr10	121107523	121107524	rs17676433	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		10q26.11	NR	rs17676433-T	0.031546	2E-6		1.127	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
1509	chr10	121118491	121118492	rs11198898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q26.11	GRK5	rs11198898-A	NR	4E-8		0.0184629	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1509	chr10	121118491	121118492	rs11198898	31537151	Freitag-Wolf S	2019-09-19	J Dent Res	Smoking Modifies the Genetic Risk for Early-Onset Periodontitis.	Early onset periodontitis x smoking status interaction	499 European ancestry ever-smoker cases, 242 European ancestry never-smoker cases	NA	10q26.11	GRK5	rs11198898-A		6E-7				NR [79780573] (imputed)	N
1509	chr10	121118491	121118492	rs11198898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.11		rs11198898-?	NR	2E-51				NR [~ 8900000] (imputed)	N
1509	chr10	121121294	121121295	rs1248079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q26.11		rs1248079-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1509	chr10	121123632	121123633	rs291970	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.11	NR	rs291970-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1509	chr10	121123632	121123633	rs291970	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.11	GRK5	rs291970-T	0.2328	2E-6		0.036	[0.021-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1509	chr10	121129796	121129797	rs291979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.11		rs291979-A	NR	9E-28		0.0177	[0.015-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1509	chr10	121129796	121129797	rs291979	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.11	GRK5	rs291979-A	0.2289	7E-27		0.0242	[0.02-0.029] unit increase	Affymetrix [18391927] (imputed)	N
1509	chr10	121149402	121149403	rs10886471	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	10q26.11	GRK5	rs10886471-C	0.778	7E-9		1.12	[1.08-1.16]	Illumina [2234194] (imputed)	N
1509	chr10	121151511	121151512	rs10886472	30060048	Wang SC	2018-07-27	Int J Neuropsychopharmacol	GRK5 is associated with the regulation of methadone dosage in heroin dependence.	Methadone dose in opioid dependence	344 Taiwanese ancestry cases	NA		GRK5	rs10886472-?	NR	4E-6				Affymetrix [615216]	N
1509	chr10	121168258	121168259	rs10437498	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.11	GRK5	rs10437498-A	0.6446	3E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix [18391927] (imputed)	N
1509	chr10	121189419	121189420	rs61876100	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Glycoprotein acetyls (mainly a1-acid glycoprotein) meal response (LMM)	11,410 individuals	NA	10q26.11		rs61876100-G	0.0580072	4E-8		0.128069	[0.086-0.17] unit increase	Illumina [7568622] (imputed)	N
1509	chr10	121204659	121204660	rs1316543	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors in alcohol dependence	454 African American women individuals, 1,087 African American men individuals, 444 European ancestry women individuals, 992 European ancestry men individuals.	NA	10q26.11	GRK5	rs1316543-?	0.9315	1E-9	(AA)			Illumina [at least 550000] (imputed)	N
1510	chr10	121255748	121255749	rs10886503	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	10q26.11	RGS10	rs10886503-T	0.39	5E-6		3.16	[1.90-5.27]	Affymetrix [426344]	N
1510	chr10	121277597	121277598	rs4752321	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (edema)	1,109 Japanese ancestry female cases, 4,625 Japanese ancestry female controls	1,331 Japanese ancestry female cases, 4,283 Japanese ancestry female controls	10q26.11	NR	rs4752321-C	0.343205576	4E-6		0.1611582	[0.093-0.229] unit decrease	Affymetrix [536506]	N
1510	chr10	121282374	121282375	rs75899940	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q26.11	RGS10	rs75899940-A	0.014933584109165	8E-6	(G_Clostridium_sensu_stricto_RNT)	0.557949	[0.31-0.8] unit increase	Illumina [7711310] (imputed)	N
1510	chr10	121287895	121287896	rs140618707	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	10q26.11		rs140618707-?	NR	9E-6				Illumina [7401356] (imputed)	N
1510	chr10	121311047	121311048	rs10510057	27529621	Otowa T	2016-08-16	PLoS One	The First Pilot Genome-Wide Gene-Environment Study of Depression in the Japanese Population.	Depressive symptoms (stressful life events interaction)	320 Japanese ancestry individuals	439 Japanese ancestry individuals	10q26.11	RGS10, TIAL1	rs10510057-C	0.489	4E-8		0.058	[0.038-0.078] unit increase	Affymetrix [534848]	N
1510	chr10	121327183	121327184	rs9421352	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.11	NR	rs9421352-T	0.2453	1E-7	(EA)	0.0389	[0.024-0.053] unit increase	Illumina [~ 11800000] (imputed)	N
1510	chr10	121328161	121328162	rs78787582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q26.11	NR	rs78787582-G	NR	1E-10		0.0283	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1510	chr10	121353053	121353054	rs41287142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q26.11	TIAL1	rs41287142-T	0.022738	2E-9		0.04469691	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr10	121366952	121366953	rs66696671	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin and paclitaxel in ovarian cancer (MTT IC50)	74 lymphoblastoid cell lines	NA	10q26.11	TIAL1	rs66696671-?	NR	7E-7				Illumina [6243550] (imputed)	N
1510	chr10	121372327	121372328	rs188789342	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	10q26.11	TIAL1, BAG3	rs188789342-?	NR	3E-11		1.488	[1.331-1.663]	Illumina [12438219] (imputed)	N
1511	chr10	121400562	121400563	rs196277	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	10q26.11		rs196277-?	NR	5E-6		0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr10	121410916	121410917	rs144814361	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	10q26.11	BAG3	rs144814361-T		2E-12		0.468	[0.34-0.6] unit increase	Illumina [NR]	N
1511	chr10	121415684	121415685	rs72840788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	10q26.11		rs72840788-G	0.786216	3E-9		0.0266416	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	10q26.11		rs72840788-?	NR	9E-6		0.05	[0.028-0.072] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	10q26.11	BAG3	rs72840788-G	0.791849	2E-27		0.491921	[0.4-0.58] unit decrease	Affymetrix [8590397] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	10q26.11	BAG3	rs72840788-G	0.792	5E-29		0.421	[0.35-0.5] unit decrease	Affymetrix [8590397] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	10q26.11	BAG3	rs72840788-G	0.778	2E-8		0.528	[0.34-0.71] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	10q26.11	BAG3	rs72840788-G	0.778	6E-20		0.3427	[0.27-0.42] unit increase	Affymetrix [~ 9500000] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	10q26.11	BAG3	rs72840788-G	0.778	3E-18		1.4008	[1.09-1.72] unit increase	Affymetrix [~ 9500000] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume	19,260 European ancestry individuals	NA	10q26.11	BAG3	rs72840788-G	0.778	2E-6		1.3235	[0.78-1.87] unit increase	Affymetrix [~ 9500000] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction	19,260 European ancestry individuals	NA	10q26.11	BAG3	rs72840788-G	0.778	4E-18		0.5941	[0.46-0.73] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular end-systolic volume	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	10q26.11	BAG3	rs72840788-?	NR	8E-32				Affymetrix [13660711] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular ejection fraction	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	10q26.11	BAG3	rs72840788-?	NR	4E-32				Affymetrix [13660711] (imputed)	N
1511	chr10	121415684	121415685	rs72840788	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	10q26.11	BAG3	rs72840788-A	0.2155	2E-11		0.0763	[0.054-0.098] unit increase	NR [7784415] (imputed)	N
1511	chr10	121419486	121419487	rs17099139	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	10q26.11		rs17099139-C	0.73	3E-11		1.19		NR [NR] (imputed)	N
1511	chr10	121419486	121419487	rs17099139	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	10q26.11	BAG3	rs17099139-G	0.2907	1E-24		1.4602388	1.34-1.59	Illumina [6530233] (imputed)	N
1511	chr10	121419486	121419487	rs17099139	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	10q26.11	BAG3	rs17099139-G	0.2907	2E-38		1.4348061	1.36-1.52	Illumina [6530233] (imputed)	N
1511	chr10	121424815	121424815	rs375034445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q26.11		rs375034445-AT	NR	2E-28		0.031	[0.026-0.036] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1511	chr10	121424815	121424815	rs375034445	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myoglobin levels	21,758 European ancestry individuals	9,173 individuals	10q26.11		rs375034445-A	0.8	2E-9		0.0758	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1511	chr10	121426311	121426312	rs7095308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q26.11		rs7095308-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1511	chr10	121426883	121426884	rs17617337	32605384	Choquet H	2020-06-30	Circ Genom Precis Med	Meta-analysis of 26,638 Individuals Identifies Two Genetic Loci Associated with Left Ventricular Ejection Fraction.	Left ventricular ejection fraction	4,483 European ancestry individuals	NA	10q26.11	BAG3	rs17617337-?	NR	3E-7		0.81	[0.5-1.12] unit decrease	Affymetrix [12703989] (imputed)	N
1511	chr10	121426883	121426884	rs17617337	32605384	Choquet H	2020-06-30	Circ Genom Precis Med	Meta-analysis of 26,638 Individuals Identifies Two Genetic Loci Associated with Left Ventricular Ejection Fraction.	Left ventricular ejection fraction	23,153 European ancestry individuals, 1,207 East Asian ancestry individuals, 1,514 Hispanic/Latino individuals, 764 African American individuals	NA	10q26.11	BAG3	rs17617337-?	NR	8E-17		0.83	[0.63-1.03] unit decrease	Affymetrix [10432573] (imputed)	N
1511	chr10	121426883	121426884	rs17617337	32605384	Choquet H	2020-06-30	Circ Genom Precis Med	Meta-analysis of 26,638 Individuals Identifies Two Genetic Loci Associated with Left Ventricular Ejection Fraction.	Left ventricular ejection fraction	18,670 European ancestry individuals, 1,207 East Asian ancestry individuals, 1,514 Hispanic/Latino individuals, 764 African American individuals	NA	10q26.11	BAG3	rs17617337-?	NR	5E-11		0.84	[0.59-1.09] unit decrease	Affymetrix [10432573] (imputed)	N
1511	chr10	121426883	121426884	rs17617337	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	10q26.11	BAG3	rs17617337-C	0.78	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [8246881] (imputed)	N
1511	chr10	121426883	121426884	rs17617337	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	10q26.11	BAG3	rs17617337-C		3E-9		0.172	unit increase	Affymetrix [at least 2696785] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	10q26.11	BAG3	rs2234962-T	0.7785	7E-38		1.208007	1.17-1.24	Affymetrix, Illumina [up to 7736182] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	10q26.11	BAG3	rs2234962-T	0.7785	2E-32			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	8E-20	(-10 ms)	0.0615631	[0.048-0.075] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	7E-14	(-8 ms)	0.0506203	[0.037-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	7E-10	(-6 ms)	0.0417032	[0.028-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	6E-9	(92 ms)	0.0370828	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	6E-49	(-22 ms)	0.0981264	[0.085-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	5E-54	(-20 ms)	0.103555	[0.09-0.117] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	5E-28	(-12 ms)	0.074049	[0.061-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	3E-52	(-18 ms)	0.101221	[0.088-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	3E-38	(-14 ms)	0.0864664	[0.073-0.1] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.11	BAG3	rs2234962-T	0.790475	2E-46	(-16 ms)	0.0954869	[0.082-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.11		rs2234962-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.11		rs2234962-?	NR	3E-27				NR [~ 8900000] (imputed)	N
1511	chr10	121429632	121429633	rs2234962	21459883	Villard E	2011-04-01	Eur Heart J	A genome-wide association study identifies two loci associated with heart failure due to dilated cardiomyopathy.	Idiopathic dilated cardiomyopathy	1,179 European ancestry cases, 1,108 European ancestry controls	1,165 European ancestry cases, 1,302 European ancestry controls	10q26.11	BAG3	rs2234962-?	NR	4E-12		1.52	[1.22-1.89]	Illumina [517382]	N
1511	chr10	121433674	121433675	rs72842207	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	10q26.11		rs72842207-?	NR	1E-8		5.7	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1511	chr10	121433674	121433675	rs72842207	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	10q26.11		rs72842207-?	NR	1E-8		5.71	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1511	chr10	121451926	121451927	rs189542078	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	8674 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry women	NA	10q26.11		rs189542078-T	0.001	2E-8		6.57	kg increase	NR [638486]	N
1511	chr10	121451926	121451927	rs189542078	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	2158 African American or Afro-Caribbean women	NA	10q26.11		rs189542078-T	0.006	8E-7		6.29	kg increase	NR [638486]	N
1511	chr10	121471250	121471251	rs196210	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	10q26.11	BAG3, INPP5F	rs196210-G	0.41	4E-22		9.66	z-score increase	Affymetrix [4314223] (imputed)	N
1512	chr10	121536326	121536327	rs117896735	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	10q26.11	INPP5F	rs117896735-A	0.0166	2E-28		0.4354	[0.36-0.51] unit increase	NR [7784415] (imputed)	N
1512	chr10	121536326	121536327	rs117896735	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	10q26.11	BAG3	rs117896735-A	0.015	2E-19		1.65	[1.48-1.85]	Illumina [11933700] (imputed)	N
1512	chr10	121536326	121536327	rs117896735	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	10q26.11	INPP5F	rs117896735-A	0.014	4E-13		1.624	[1.49-1.76]	Illumina [7893274] (imputed)	N
1512	chr10	121587042	121587043	rs61757087	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.11	NR	rs61757087-C	0.01568	5E-19	(TMSB4X)	0.3342	NR unit increase	Illumina [1671387] (imputed)	N
1512	chr10	121587042	121587043	rs61757087	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.11	NR	rs61757087-C	0.01568	2E-9	(MAP4)	0.01877	NR unit increase	Illumina [1671387] (imputed)	N
1512	chr10	121587042	121587043	rs61757087	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.11	NR	rs61757087-C	0.01568	1E-17	(AHNAK)	0.1675	NR unit increase	Illumina [1671387] (imputed)	N
1512	chr10	121587042	121587043	rs61757087	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.11	NR	rs61757087-C	0.01568	1E-10	(PTMA)	0.0562	NR unit increase	Illumina [1671387] (imputed)	N
1512	chr10	121604701	121604702	rs3888183	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.11	MCMBP	rs3888183-T	0.1202	2E-7		0.0549	[0.035-0.075] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1512	chr10	121605529	121605530	rs7072901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q26.11	NR	rs7072901-A	NR	3E-16		0.0298	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr10	121614660	121614661	rs138910098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.11		rs138910098-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1512	chr10	121629047	121629048	rs113416614	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	10q26.11	NR	rs113416614-T	0.0678518	8E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1513	chr10	121636405	121636406	rs2939931	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q26.11	MCMBP	rs2939931-T	0.517188	2E-8		0.00785688	[0.0051-0.0106] unit decrease	Affymetrix [12370749]	N
1513	chr10	121652426	121652427	rs73357833	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	10q26.11		rs73357833-?	NR	3E-6		33.1663	[31.69-34.64]	NR [663083]	N
1513	chr10	121657535	121657536	rs75356180	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.11	SEC23IP	rs75356180-A	0.8802	1E-10		0.0187	[0.013-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1513	chr10	121659810	121659811	rs2456722	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q26.12	SEC23IP	rs2456722-A	0.400778	2E-8		0.0112798	[0.0074-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1513	chr10	121660399	121660400	rs11199116	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q26.12	NR	rs11199116-C	0.1909	1E-9		0.0306	[0.021-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1513	chr10	121660464	121660465	rs7915430	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	10q26.12	NR	rs7915430-T	0.797843	2E-12		0.0254373	[0.018-0.033] unit increase	Affymetrix [16577313] (imputed)	N
1513	chr10	121660464	121660465	rs7915430	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	10q26.12	NR	rs7915430-T	0.797851	1E-8		0.020841	[0.013-0.028] unit increase	Affymetrix [16577424] (imputed)	N
1513	chr10	121665772	121665773	rs2456721	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	10q26.12	SEC23IP	rs2456721-?		5E-6		0.266	[NR] unit decrease	Illumina [5970354] (imputed)	N
1513	chr10	121701856	121701856	rs3981101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	10q26.12	SEC23IP	rs3981101-TAC	0.054798	6E-11		0.032370016	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1513	chr10	121701856	121701856	rs3981101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q26.12	SEC23IP	rs3981101-TAC	0.0547800000000001	2E-11		0.03329508	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1513	chr10	121708928	121708929	rs12571664	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	10q26.12	SEC23IP	rs12571664-T	0.79	3E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1513	chr10	121723692	121723693	rs55977543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q26.12		rs55977543-G	NR	4E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1513	chr10	121759177	121759178	rs10886558	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	10q26.12	NR	rs10886558-?	NR	4E-6		0.0577	[0.033-0.082] unit increase	Illumina [at least 560000] (imputed)	N
1514	chr10	121803284	121803285	rs12767946	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	10q26.12	RP11-781P14.3	rs12767946-C	NR	2E-24		0.01576	[0.007108-0.03496]	Illumina [484621]	N
1514	chr10	121804379	121804380	rs11199154	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	10q26.12		rs11199154-?	NR	4E-6		0.16	[0.091-0.229] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1514	chr10	121821537	121821538	rs17621444	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q26.12	NR	rs17621444-C	0.722329589937667	3E-6	(IGP31)	0.164	[0.095-0.233] unit increase	Illumina [~ 2500000] (imputed)	N
1514	chr10	121889930	121889931	rs151193107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.12	NR	rs151193107-G	0.998538	4E-18				Affymetrix, Illumina [24246363] (imputed)	N
1515	chr10	121983125	121983126	rs1929666	31932740	Bonomi A	2020-01-14	Genes Immun	Analysis of the genetic variants associated with circulating levels of sgp130. Results from the IMPROVE study.	Soluble gp130 levels	3,439 European ancestry individuals	NA	10q26.12	LOC105378515	rs1929666-T		2E-6		0.025	[0.015-0.035] unit increase	Illumina [360842]	N
1516	chr10	122043488	122043489	rs11199254	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q26.12	NR	rs11199254-C	0.994468962750716	2E-6	(IGP40)	1.5588	[0.91-2.21] unit increase	Illumina [~ 2500000] (imputed)	N
1516	chr10	122043488	122043489	rs11199254	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q26.12	NR	rs11199254-C	0.994452838362069	3E-6	(IGP39)	1.5568	[0.9-2.21] unit increase	Illumina [~ 2500000] (imputed)	N
1516	chr10	122060193	122060194	rs1919703	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.12	NR	rs1919703-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1516	chr10	122068765	122068766	rs10788066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.12		rs10788066-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1517	chr10	122161889	122161890	rs7914279	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	10q26.12	MIR4682, PLPP4	rs7914279-T	0.8875	6E-6		0.1461	[0.083-0.209] unit increase	NR [NR] (imputed)	N
1517	chr10	122161889	122161890	rs7914279	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	10q26.12	NR	rs7914279-G	NR	6E-6				NR [NR] (imputed)	N
1517	chr10	122161889	122161890	rs7914279	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	10q26.12	MIR4682, PLPP4	rs7914279-T	0.8927	6E-7		0.1455	[0.088-0.203] unit increase	NR [NR] (imputed)	N
1517	chr10	122161889	122161890	rs7914279	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	10q26.12	MIR4682, PLPP4	rs7914279-T	NR	5E-6		0.1396	[0.08-0.199] unit increase	NR [NR] (imputed)	N
1517	chr10	122175554	122175555	rs2148476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.12	BRWD2	rs2148476-?	NR	4E-6	(TAG 56:8)	0.19196896	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1517	chr10	122175554	122175555	rs2148476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.12	BRWD2	rs2148476-?	NR	2E-6	(TAG 54:7)	0.19689849	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1517	chr10	122175554	122175555	rs2148476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.12	BRWD2	rs2148476-?	NR	2E-6	(TAG 54:6)	0.19584934	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1517	chr10	122185353	122185354	rs80352786	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.12	NR	rs80352786-G	0.01568	2E-8	(ENO3)	0.7639	NR unit increase	Illumina [1671387] (imputed)	N
1517	chr10	122242292	122242293	rs10788096	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	10q26.12	C10orf85, MIR5694, PPAPDC1A, WDR11-AS1	rs10788096-?	NR	1E-6				Illumina [9143600] (imputed)	N
1517	chr10	122279475	122279476	rs118048115	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.12	NR	rs118048115-T	0.0122	1E-8	(GGH)	0.09364	NR unit increase	Illumina [1671387] (imputed)	N
1517	chr10	122279475	122279476	rs118048115	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		10q26.12	PPAPDC1A	rs118048115-?	0.04	6E-7		0.34	unit decrease	Illumina [NR] (imputed)	N
1517	chr10	122286856	122286857	rs76560373	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.12	NR	rs76560373-T	0.01045	5E-11	(TNC)	0.08061	NR unit increase	Illumina [1671387] (imputed)	N
1518	chr10	122293567	122293568	rs61871726	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	10q26.12	NR	rs61871726-?	0.07	5E-7		1.98	[1.52-2.59]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1518	chr10	122318146	122318147	rs12771445	34776419	Brolin K	2021-11-07	J Parkinsons Dis	Insights on Genetic and Environmental Factors in Parkinson's Disease from a Regional Swedish Case-Control Cohort.	Parkinson's disease	929 Swedish ancestry cases, 935 Swedish ancestry controls	NA	10q26.12		rs12771445-T	0.314	1E-8		0.663	[0.52-0.8]	Illumina [5445841] (imputed)	N
1518	chr10	122358462	122358463	rs2901257	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	10q26.12		rs2901257-?	NR	5E-6		0.02	[0.01-0.02] unit increase	Illumina [7066534] (imputed)	N
1518	chr10	122393638	122393639	rs184761838	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gluconobacter abundance in stool	5,959 Finnish ancestry individuals	NA	10q26.12		rs184761838-G	0.0177725	5E-8		0.0965752	[0.062-0.131] unit increase	Illumina [7980478] (imputed)	N
1519	chr10	122461232	122461233	rs79894696	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.12	WDR11-AS1	rs79894696-T	0.0196	5E-6		0.1317	[0.075-0.188] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1519	chr10	122515979	122515980	rs17100759	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.12	NR	rs17100759-?	NR	2E-11				Affymetrix [NR]	N
1519	chr10	122522380	122522381	rs12261764	25140149	Hohman TJ	2014-08-04	Front Aging Neurosci	Genetic variation modifies risk for neurodegeneration based on biomarker status.	Left inferior lateral ventricle volume (Cerebrospinal fluid biomarker status interaction)	382 European ancestry mild cognitive impairment cases, 114 European ancestry Alzheimer's disease cases, 194 European ancestry controls	NA	10q26.12	WDR11-AS1	rs12261764-?		1E-7	(Dilation, tau positive)	5.55	[NR] unit increase interaction	Illumina [296267]	N
1520	chr10	122591372	122591373	rs2919009	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.12	BRWD2, WDR11	rs2919009-A	0.12	5E-6	(Diet protein )	0.04	[NR] %energy increase	Illumina [899892]	N
1520	chr10	122629578	122629579	rs4548546	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	10q26.12	WDR11	rs4548546-T	0.31	7E-8		0.034	unit increase	Affymetrix, Illumina [up to 32463442] (imputed)	N
1520	chr10	122629578	122629579	rs4548546	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	10q26.12		rs4548546-T	0.31	2E-16		1.11	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
1520	chr10	122629578	122629579	rs4548546	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	10q26.12	WDR11	rs4548546-T	0.31	3E-15		1.1	[1.08-1.13]	Affymetrix, Illumina [42907111] (imputed)	N
1520	chr10	122659624	122659625	rs199965409	29155802	Huckins LM	2017-07-25	Mol Psychiatry	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Anorexia nervosa	2,158 European ancestry female cases, 15 ,485 European ancestry controls	1,299 European ancestry cases, 3,733 European ancestry controls	10q26.12	WDR11	rs199965409-A	0.01	1E-7		10.42		Illumina [up to 524954]	N
1520	chr10	122674848	122674849	rs200367988	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		WDR11, FGFR2	rs200367988-?	0.33	5E-18	(conditional on Round 1 SNPs)	0.051	unit increase	Affymetrix [10109774] (imputed)	N
1521	chr10	122720973	122720974	rs4752485	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	10q26.12	intergenic	rs4752485-?	NR	7E-6	(FEV1 decline in non-asthmatics)	0.148	[0.083-0.213] unit decrease	Illumina [~ 2500000] (imputed)	N
1521	chr10	122794925	122794926	rs4558107	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q26.12	NR	rs4558107-A	NR	2E-16		1.06	[1.05-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1521	chr10	122798412	122798413	rs2420906	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	10q26.12		rs2420906-?	NR	6E-6		1.08206	[1.05-1.12]	NR [680312]	N
1521	chr10	122802461	122802462	rs748476	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.12	NR	rs748476-C	0.1763	7E-7	(EA)	0.0399	[0.024-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
1521	chr10	122802505	122802506	rs2420903	32757270	Ruiz-Pinto S	2020-08-05	Clin Pharmacol Ther	Regulatory CDH4 genetic variants associate with risk to develop capecitabine-induced hand-foot syndrome.	Capecitabine-induced hand-foot syndrome in breast or colorectal cancer	88 cases, 78 controls	24 cases, 61 controls	10q26.12	NR	rs2420903-?	0.41	9E-6		0.52	[0.39-0.69]	Illumina [520052]	N
1521	chr10	122802505	122802506	rs2420903	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	10q26.12	BRWD2, LOC100129699	rs2420903-A	0.3691	6E-6	(Yun)	0.4386	unit decrease	Illumina [up to 528294]	N
1521	chr10	122813318	122813319	rs12414906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-95I16.2	rs12414906-C	NR	5E-13		0.0362747	[0.026-0.046] unit increase	Affymetrix [319769] (imputed)	N
1521	chr10	122813318	122813319	rs12414906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-95I16.2	rs12414906-C	NR	8E-13		0.0359253	[0.026-0.046] unit increase	Affymetrix [319769] (imputed)	N
1521	chr10	122813318	122813319	rs12414906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q26.12	RP11-95I16.2	rs12414906-C	NR	3E-9		0.0301067	[0.02-0.04] unit increase	Affymetrix [321114] (imputed)	N
1521	chr10	122813318	122813319	rs12414906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q26.12	RP11-95I16.2	rs12414906-C	NR	3E-10		0.031838	[0.022-0.042] unit increase	Affymetrix [321169] (imputed)	N
1522	chr10	122816107	122816108	rs17597176	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	10q26.12	NR	rs17597176-T	NR	2E-12		0.0301	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1522	chr10	122819558	122819559	rs11199735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199735-G	NR	3E-10		0.0218577	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
1522	chr10	122830042	122830043	rs11199747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199747-C	NR	4E-9		0.0222733	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122830042	122830043	rs11199747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199747-C	NR	6E-9		0.021997	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122832314	122832315	rs61365765	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	10q26.12		rs61365765-A	0.233624627	4E-10		0.8545302	[0.813427827-0.897709453]	Illumina [8919992] (imputed)	N
1522	chr10	122834162	122834163	rs7078330	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	10q26.12	NR	rs7078330-T	0.08785600000000005	6E-13		0.0312818	[0.023-0.04] unit increase	Affymetrix [16585745] (imputed)	N
1522	chr10	122834481	122834482	rs140783917	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q26.12	NR	rs140783917-C	NR	1E-14		1.209	[1.15-1.27]	Affymetrix, Illumina [29235255] (imputed)	N
1522	chr10	122834481	122834482	rs140783917	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	10q26.12	NR	rs140783917-C	0.849	4E-14		1.218	[1.16-1.28]	Affymetrix, Illumina [10186136] (imputed)	N
1522	chr10	122836429	122836430	rs77612511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q26.12		rs77612511-T	0.141750277	2E-9		0.1807642	[0.12-0.24] unit decrease	Illumina [13406905] (imputed)	N
1522	chr10	122836429	122836430	rs77612511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q26.12		rs77612511-T	NR	2E-9		0.1803	[0.12-0.24] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1522	chr10	122836857	122836858	rs11199755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199755-T	NR	3E-8		0.0249921	[0.016-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122836857	122836858	rs11199755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199755-T	NR	4E-8		0.024757	[0.016-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122836857	122836858	rs11199755	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q26.12		rs11199755-T	NR	8E-6		0.9521612	[0.931884429138468-0.972879198203729]	Illumina [8919992] (imputed)	N
1522	chr10	122836857	122836858	rs11199755	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q26.12	WDR11, FGFR2	rs11199755-C	0.81	5E-8	(Conditioned)			Illumina [12557761] (imputed)	N
1522	chr10	122840276	122840277	rs2420915	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	10q26.12	MIR5694	rs2420915-A	0.09	5E-9		0.0094	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1522	chr10	122843982	122843983	rs11199758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199758-C	NR	7E-13		0.0359833	[0.026-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr10	122844708	122844709	rs2252004	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	10q26.12	FGFR2, WDR11	rs2252004-C	0.785	8E-6		1.151	NR	Illumina [7742602] (imputed)	N
1522	chr10	122849666	122849667	rs35668226	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	10q26.12	RPL19P16	rs35668226-A	0.792	3E-7	(Japanese)	1.09	[1.05-1.13]	Illumina [7521072] (imputed)	N
1522	chr10	122850154	122850155	rs112672290	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q26.12	WDR11	rs112672290-A	0.912643	1E-13		0.0259117	[0.019-0.033] unit increase	Affymetrix [NR] (imputed)	N
1522	chr10	122852428	122852429	rs2130789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs2130789-C	NR	2E-8		0.0312175	[0.02-0.042] unit increase	Affymetrix [321016] (imputed)	N
1522	chr10	122859176	122859177	rs7079858	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q26.12	NR	rs7079858-G	NR	5E-8		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1522	chr10	122859176	122859177	rs7079858	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q26.12	NR	rs7079858-G	0.911	2E-8	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs80235628-A	NR	3E-8		0.0373525	[0.024-0.051] unit decrease	Affymetrix [321788] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs80235628-A	NR	5E-8		0.0354403	[0.023-0.048] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q26.12	NR	rs80235628-G	0.949903	2E-21		0.0183904	[0.015-0.022] unit increase	Affymetrix [16582909] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	10q26.12	NR	rs80235628-G	0.950127	2E-17		0.0247091	[0.019-0.03] unit increase	Affymetrix [16585854] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q26.12	NR	rs80235628-G	0.949903	2E-13		0.0159531	[0.012-0.02] unit increase	Affymetrix [16582965] (imputed)	N
1522	chr10	122859269	122859270	rs80235628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	10q26.12	NR	rs80235628-G	0.950127	1E-9		0.0211909	[0.015-0.028] unit increase	Affymetrix [16585866] (imputed)	N
1522	chr10	122859832	122859832	rs35578572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	10q26.12		rs35578572-AAT	NR	5E-25		0.0417	[0.034-0.05] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1522	chr10	122865021	122865021	rs35774774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	10q26.12		rs35774774-AG	NR	3E-8		0.0167	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1522	chr10	122865418	122865419	rs10886851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs10886851-T	NR	5E-15		0.0352043	[0.026-0.044] unit increase	Affymetrix [321016] (imputed)	N
1522	chr10	122870531	122870532	rs7896335	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q26.12	NR	rs7896335-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
1522	chr10	122872598	122872599	rs12414160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs12414160-G	NR	6E-12		0.035777	[0.026-0.046] unit decrease	Affymetrix [321788] (imputed)	N
1522	chr10	122874194	122874195	rs7077066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.12		rs7077066-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs17101456-G	NR	5E-20		0.0401167	[0.032-0.049] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs17101456-G	NR	1E-19		0.0397659	[0.031-0.048] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs17101456-G	NR	3E-8		0.0245007	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs17101456-G	NR	4E-10		0.0277022	[0.019-0.036] unit increase	Affymetrix [321169] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	10q26.12	NR	rs17101456-A	0.8791	1E-19		0.0251	[0.02-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	10q26.12	NA	rs17101456-A	0.879	7E-14		0.0206	[0.015-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1522	chr10	122875039	122875040	rs17101456	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	10q26.12	NR	rs17101456-A	0.879	7E-14		0.0206	[0.015-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1522	chr10	122875588	122875589	rs2254069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	10q26.12		rs2254069-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1522	chr10	122875588	122875589	rs2254069	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	10q26.12	NR	rs2254069-A	0.12	2E-17		0.024	[0.019-0.029] unit increase	Affymetrix [2446094] (imputed)	N
1522	chr10	122875588	122875589	rs2254069	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	10q26.12	NR	rs2254069-A	0.12	5E-8				Affymetrix [2446094] (imputed)	N
1522	chr10	122879731	122879732	rs2130779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs2130779-T	NR	1E-13		0.0423434	[0.031-0.054] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122879731	122879732	rs2130779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs2130779-T	NR	1E-13		0.0423365	[0.031-0.054] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122879731	122879732	rs2130779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	10q26.12	NR	rs2130779-T	NR	1E-9		0.0297	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1522	chr10	122880458	122880459	rs10886854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs10886854-C	NR	1E-15		0.0316046	[0.024-0.039] unit increase	Affymetrix [321788] (imputed)	N
1522	chr10	122880458	122880459	rs10886854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs10886854-C	NR	3E-18		0.0331332	[0.026-0.041] unit increase	Affymetrix [321016] (imputed)	N
1522	chr10	122882193	122882194	rs11199781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199781-T	NR	4E-10		0.0241035	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122882193	122882194	rs11199781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs11199781-T	NR	1E-9		0.0235826	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122882193	122882194	rs11199781	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q26.12	NR	rs11199781-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1522	chr10	122886457	122886458	rs75921557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs75921557-A	NR	8E-10		0.0336985	[0.023-0.044] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122886457	122886458	rs75921557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	RP11-159H3.1	rs75921557-A	NR	1E-9		0.0333871	[0.023-0.044] unit increase	Affymetrix [319769] (imputed)	N
1522	chr10	122897958	122897959	rs1907240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.12		rs1907240-A	NR	2E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1522	chr10	122897958	122897959	rs1907240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.12		rs1907240-A	NR	8E-15		0.0246	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1522	chr10	122897958	122897959	rs1907240	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q26.12	MIR5694, FGFR2	rs1907240-A	0.698	3E-11	(Japanese)	0.024	[0.016-0.032] unit decrease	Illumina [6108953] (imputed)	N
1522	chr10	122897983	122897984	rs1907241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q26.12		rs1907241-T	0.697694	3E-13		0.0252702	[0.019-0.032] unit decrease	Illumina [13479178] (imputed)	N
1522	chr10	122898696	122898697	rs2257129	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	10q26.12	WDR11, FGFR2	rs2257129-?		2E-11		0.0394	[0.028-0.051] unit decrease	Illumina [31500000] (imputed)	N
1522	chr10	122898696	122898697	rs2257129	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	10q26.12	WDR11, FGFR2	rs2257129-C	0.9	4E-8		1.08	[1.05-1.12]	Illumina [5167567] (imputed)	N
1522	chr10	122898696	122898697	rs2257129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	10q26.12	MIR5694, FGFR2	rs2257129-?	NR	2E-10		0.0365	[0.025-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1522	chr10	122898696	122898697	rs2257129	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q26.12	intergenic	rs2257129-T	0.0689	5E-7		0.0835	[0.051-0.116] unit decrease	NR [8041861] (imputed)	N
1522	chr10	122898696	122898697	rs2257129	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q26.12	MIR5694, FGFR2	rs2257129-C	0.97	4E-11		0.025	[0.017-0.033] unit decrease	Illumina [6108953] (imputed)	N
1522	chr10	122900622	122900623	rs2901286	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q26.12	intergenic	rs2901286-A	0.0199	4E-9		0.0441	[0.029-0.059] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1522	chr10	122900622	122900623	rs2901286	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	10q26.12	intergenic	rs2901286-A	NR	4E-6		4.66	[1.58-13.7]	Affymetrix [476796]	N
1522	chr10	122915344	122915345	rs72631105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q26.12		rs72631105-A	0.305184	4E-9		0.0180758	[0.012-0.024] unit decrease	Illumina [13479924] (imputed)	N
1522	chr10	122915344	122915345	rs72631105	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	10q26.12	WDR11	rs72631105-A	0.1899	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1522	chr10	122916141	122916142	rs1907266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q26.12		rs1907266-C	NR	9E-11		0.0534	[0.037-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1522	chr10	122926459	122926460	rs7893136	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	10q26.12	NR	rs7893136-T	0.021087999999999996	6E-10		0.0184224	[0.013-0.024] unit increase	Affymetrix [16582909] (imputed)	N
1522	chr10	122926459	122926460	rs7893136	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	10q26.12	NR	rs7893136-T	0.021087999999999996	2E-6		0.0157205	[0.0094-0.0221] unit increase	Affymetrix [16582965] (imputed)	N
1522	chr10	122929492	122929493	rs10886863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q26.12		rs10886863-C	NR	3E-13		0.0314	[0.023-0.04] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1522	chr10	122929492	122929493	rs10886863	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	10q26.12		rs10886863-C	0.695264199	7E-10		1.0574176	[1.038804664-1.076364048]	Illumina [8919992] (imputed)	N
1522	chr10	122929492	122929493	rs10886863	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q26.12	WDR11, FGFR2	rs10886863-C	0.664	5E-17		1.06	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1522	chr10	122929492	122929493	rs10886863	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q26.12	WDR11, FGFR2	rs10886863-C	0.7	3E-9		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q26.12		rs10886864-T	NR	1E-10		0.0592	[0.041-0.077] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q26.12		rs10886864-T	0.699102372	7E-9		0.062374983	[0.041-0.083] unit increase	Illumina [13134967] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q26.12		rs10886864-T	NR	4E-9		0.061	[0.041-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	10q26.12		rs10886864-T	NR	6E-9		0.0495	[0.033-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	10q26.12		rs10886864-T	0.699102372	8E-9		0.05229608	[0.035-0.07] unit increase	Illumina [13134967] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	10q26.12		rs10886864-T	NR	4E-8		0.0492	[0.032-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1522	chr10	122929536	122929537	rs10886864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	10q26.12		rs10886864-T	0.70109	2E-12		0.0363995	[0.026-0.047] unit decrease	Illumina [13465896] (imputed)	N
1522	chr10	122930567	122930568	rs7071036	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q26.12	NR	rs7071036-C	0.1978	2E-12		0.051	[0.037-0.065] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1522	chr10	122930944	122930945	rs11199812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q26.12		rs11199812-A	NR	7E-9		0.0237	[0.016-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1522	chr10	122939373	122939374	rs7085142	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	10q26.12	BRWD2	rs7085142-T	0.37	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1522	chr10	122940828	122940829	rs10788142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10788142-T	NR	2E-12		0.0223819	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122940828	122940829	rs10788142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10788142-T	NR	3E-12		0.0222516	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1522	chr10	122941790	122941791	rs6585711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs6585711-G	NR	8E-10		0.0202719	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1522	chr10	122941790	122941791	rs6585711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	LINC01153	rs6585711-G	NR	4E-8		0.0174962	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
1522	chr10	122945085	122945086	rs3943077	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	10q26.12	WDR11, FGFR2	rs3943077-A	0.567	3E-14		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1523	chr10	122961243	122961244	rs11199826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q26.12		rs11199826-G	0.197829062	8E-9		0.06839405	[0.045-0.092] unit decrease	Illumina [13429769] (imputed)	N
1523	chr10	122967169	122967170	rs10788149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10788149-G	NR	2E-10		0.0192071	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1523	chr10	122967169	122967170	rs10788149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10788149-G	NR	2E-10		0.0193543	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1523	chr10	122967572	122967573	rs10886869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10886869-G	NR	2E-9		0.0229203	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
1523	chr10	122968963	122968964	rs11592107	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	10q26.12	FGFR2	rs11592107-G	0.6904	2E-20		0.3024	[0.24-0.37] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1523	chr10	122970922	122970923	rs1907220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q26.12		rs1907220-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1523	chr10	122972397	122972398	rs12221275	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (L. iners)	171 Kenyan ancestry individuals	NA	10q26.12	WDR11, FGFR2	rs12221275-A	0.01	7E-6		2.22	NR unit increase	Illumina [336151] (imputed)	N
1523	chr10	122972426	122972427	rs1907221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs1907221-C	NR	1E-9		0.0192233	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1523	chr10	122974769	122974770	rs10510090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs10510090-C	NR	8E-10		0.0244464	[0.017-0.032] unit increase	Affymetrix [321788] (imputed)	N
1523	chr10	122977095	122977096	rs1907227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10q26.12	LINC01153	rs1907227-G	NR	2E-8		0.0240233	[0.016-0.032] unit increase	Affymetrix [323858] (imputed)	N
1523	chr10	122977156	122977157	rs11199835	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	10q26.12	RP11-159H3.2	rs11199835-G	0.319005	7E-10		0.051952884	[0.035-0.068] unit increase	Affymetrix [7288503] (imputed)	N
1523	chr10	122980743	122980744	rs12357982	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs12357982-A	NR	5E-8		0.0280815	[0.018-0.038] unit increase	Affymetrix [321788] (imputed)	N
1523	chr10	122988934	122988935	rs4752518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	10q26.12		rs4752518-T	NR	7E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1523	chr10	122989992	122989993	rs11199839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	10q26.12	LINC01153	rs11199839-C	NR	1E-8		0.0191501	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
1523	chr10	122992551	122992552	rs61872983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	10q26.12	LINC01153	rs61872983-A	NR	3E-8		0.0205807	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
1523	chr10	122999549	122999550	rs878409	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q26.12	FGFR2	rs878409-G	0.455371	2E-8		0.0112307	[0.0073-0.0152] unit increase	Affymetrix [NR] (imputed)	N
1523	chr10	122999865	122999866	rs12358504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q26.12		rs12358504-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1523	chr10	123001731	123001732	rs7922045	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q26.12	NR	rs7922045-C	0.5268	4E-9		0.0555	[0.037-0.074] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1523	chr10	123003706	123003707	rs17101702	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.12	BRWD2	rs17101702-?	NR	1E-6	(anthranilic acid)	1.8428589	[1.1-2.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1523	chr10	123032518	123032519	rs11199874	22130093	Nam RK	2011-12-01	Cancer Biol Ther	New variants at 10q26 and 15q21 are associated with aggressive prostate cancer in a genome-wide association study from a prostate biopsy screening cohort.	Prostate cancer	316 cases, 229 controls	55 Asian ancestry cases, 134 Asian ancestry controls, 1,382 European ancestry cases, 1,428 European ancestry controls, 184 Black cases, 127 Black controls, 42 cases, 87 controls	10q26.12	intergenic	rs11199874-?	NR	3E-10				Affymetrix [443816]	N
1523	chr10	123033548	123033549	rs10788160	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.12		rs10788160-A	0.2571	8E-13		0.1814137	[0.13-0.23] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1523	chr10	123033548	123033549	rs10788160	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.12		rs10788160-A	0.2573	7E-13		0.12644261	[0.091-0.162] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1523	chr10	123033548	123033549	rs10788160	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	10q26.12	FGFR2	rs10788160-A	0.31	5E-15		10.2	[NR] % increase	Illumina [304070]	N
1523	chr10	123038896	123038897	rs12413648	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	10q26.12	LINC01153	rs12413648-?		9E-10				Illumina [5041948] (imputed)	N
1523	chr10	123041820	123041821	rs11199878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.12		rs11199878-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1523	chr10	123045211	123045212	rs11199879	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	10q26.12	FGFR2	rs11199879-C	0.252	5E-21		0.06	unit increase	Affymetrix, Illumina [up to 32463442] (imputed)	N
1523	chr10	123045211	123045212	rs11199879	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	10q26.12		rs11199879-C	0.252	6E-18		1.13	[1.10-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
1523	chr10	123045211	123045212	rs11199879	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	10q26.12	FGFR2	rs11199879-C	0.252	4E-20		1.13	[1.10-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
1523	chr10	123049263	123049264	rs10886902	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals		FGFR2	rs10886902-C	0.24	2E-53		0.100774	[0.088-0.114] unit increase	Affymetrix [10109774] (imputed)	N
1523	chr10	123054017	123054018	rs10788167	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q26.12	NR	rs10788167-T	NR	1E-15		1.063	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1524	chr10	123081051	123081052	rs11199907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.12		rs11199907-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1524	chr10	123093900	123093901	rs11199914	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q26.12		rs11199914-T	NR	4E-13		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1524	chr10	123093900	123093901	rs11199914	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.12	intergenic	rs11199914-C	0.68	7E-12	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1524	chr10	123093900	123093901	rs11199914	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10q26.12	NR	rs11199914-C	0.68	8E-9		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1524	chr10	123093900	123093901	rs11199914	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q26.12	intergenic	rs11199914-C	0.68	2E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1524	chr10	123093991	123093991	rs11462858	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.12	NR	rs11462858-GT	0.3215	2E-12	(EA)	0.0471	[0.034-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
1524	chr10	123095011	123095012	rs35098964	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q26.12		rs35098964-?	NR	8E-8		0.917879	[0.89-0.95]	NR [682398]	N
1524	chr10	123095207	123095208	rs9421409	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10q26.12		rs9421409-G	NR	4E-9		1.084	NR	Affymetrix [7846216] (imputed)	N
1524	chr10	123120035	123120036	rs17601696	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	10q26.12	intergenic	rs17601696-T	0.08163	5E-8		4.75	[2.72-8.32]	Illumina [4196861] (imputed)	N
1524	chr10	123143255	123143256	rs73362352	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q26.12	NR	rs73362352-A	0.113	2E-6		0.44	[0.26-0.62] unit decrease	Illumina [9469131] (imputed)	N
1524	chr10	123185302	123185303	rs10749415	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q26.13	NR	rs10749415-A	NR	3E-17		1.116	[1.09-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
1524	chr10	123185302	123185303	rs10749415	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	10q26.13	NR	rs10749415-A	0.978	9E-6		1.281	[1.15-1.43]	Affymetrix, Illumina [10186136] (imputed)	N
1524	chr10	123185302	123185303	rs10749415	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	10q26.13	intergenic	rs10749415-?	0.13	9E-6	(women, model 2)	0.421	unit decrease	Illumina [628376]	N
1524	chr10	123185302	123185303	rs10749415	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	10q26.13	WDR11, FGFR2	rs10749415-?	0.95	9E-25	(conditional on Round 3 SNPs)	0.117	unit increase	Affymetrix [10109774] (imputed)	N
1524	chr10	123198959	123198960	rs17096089	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	10q26.13	NR	rs17096089-C	NR	8E-12		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1524	chr10	123198959	123198960	rs17096089	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	10q26.13	NR	rs17096089-C	NR	4E-11				Affymetrix, Illumina [NR] (imputed)	N
1525	chr10	123208880	123208881	rs2420936	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q26.13	intergenic	rs2420936-?	NR	3E-6	(BM4D-weighted model)			Illumina [501584]	N
1525	chr10	123214437	123214438	rs11199973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	10q26.13		rs11199973-T	NR	1E-8		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1525	chr10	123214437	123214438	rs11199973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	10q26.13	NR	rs11199973-T	NR	5E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1525	chr10	123215088	123215089	rs10788184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	10q26.13		rs10788184-A	NR	6E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1525	chr10	123220111	123220112	rs2114685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.13		rs2114685-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1525	chr10	123248662	123248663	rs1649198	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	10q26.13		rs1649198-T	0.76518	1E-6		0.03926	[0.024-0.055] unit increase	Affymetrix [15580782] (imputed)	N
1525	chr10	123272295	123272296	rs3135766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q26.13		rs3135766-A	NR	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1525	chr10	123272295	123272296	rs3135766	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	10q26.13	FGFR2	rs3135766-G	0.41765	3E-17		0.00439844	[0.0034-0.0054] unit increase	Affymetrix [13995440] (imputed)	N
1525	chr10	123275665	123275666	rs2981453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	10q26.13	NR	rs2981453-T	NR	3E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1525	chr10	123277868	123277869	rs3135758	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	10q26.13	NR	rs3135758-A	NR	2E-6	(EA)	0.05774	(-0.08136--0.03413) mg/dl decrease	Illumina [up to 509150]	N
1525	chr10	123279642	123279643	rs138315382	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	10q26.13	FGFR2	rs138315382-T	0.0011	5E-7		0.3275	[0.2-0.46] unit increase	Affymetrix, Illumina [at least 228985]	N
1525	chr10	123279642	123279643	rs138315382	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	10q26.13	FGFR2	rs138315382-T	0.0013	1E-7		0.3658	[0.23-0.5] unit increase	Affymetrix, Illumina [at least 228985]	N
1525	chr10	123279642	123279643	rs138315382	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	10q26.13	FGFR2	rs138315382-T	9.00000000000011E-4	1E-7		0.2583	[0.16-0.35] unit increase	Affymetrix, Illumina [at least 228985]	N
1525	chr10	123279642	123279643	rs138315382	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	10q26.13	FGFR2	rs138315382-T	0.0011	1E-7		0.2685	[0.17-0.37] unit increase	Affymetrix, Illumina [at least 228985]	N
1525	chr10	123280657	123280658	rs3135753	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	10q26.13	NR	rs3135753-T	0.9897	9E-7		1.0717	[0.65-1.49] unit decrease	Affymetrix, Illumina [2538056] (imputed)	N
1525	chr10	123285619	123285620	rs17541509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.13		rs17541509-T	0.04	2E-12		7.06	z score increase	Affymetrix [9061022] (imputed)	N
1525	chr10	123285619	123285620	rs17541509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.13		rs17541509-T	0.04	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1525	chr10	123285619	123285620	rs17541509	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.13	NR	rs17541509-T	0.0393	1E-10				NR [9056863] (imputed)	N
1525	chr10	123318184	123318185	rs3096763	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs3096763-G	NR	7E-7		1.048218	[1.03-1.07]	Affymetrix [7846216] (imputed)	N
1525	chr10	123327875	123327876	rs10510097	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	NR	rs10510097-T	0.1104	2E-58	(EA)	0.1546	[0.14-0.17] unit increase	Illumina [~ 11800000] (imputed)	N
1525	chr10	123330436	123330437	rs117059665	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	10q26.13	FGFR2	rs117059665-T	0.048	5E-6				Affymetrix [525356]	N
1525	chr10	123331689	123331690	rs4752569	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	10q26.13	intergenic	rs4752569-?	0.503	1E-11	(conditional on Round 2 SNPs)	0.038	unit increase	Affymetrix [10109774] (imputed)	N
1525	chr10	123332576	123332577	rs3750817	22951594	Elgazzar S	2012-09-06	J Hum Genet	A genome-wide association study identifies a genetic variant in the SIAH2 locus associated with hormonal receptor-positive breast cancer in Japanese.	Breast cancer	1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls	1,653 Japanese ancestry cases, 2,797 Japanese ancestry controls	10q26.13	FGFR2	rs3750817-T	0.49	8E-8		1.22	[NR]	Illumina [453627]	N
1525	chr10	123334929	123334930	rs11200014	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	10q26.13	FGFR2	rs11200014-A	NR	8E-35	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1525	chr10	123337116	123337117	rs2912780	25956309	Palomba G	2015-05-10	BMC Cancer	Genome-wide association study of susceptibility loci for breast cancer in Sardinian population.	Breast cancer	1,367 Sardinian cases, 1,658 Sardinian controls	201 Sardinian cases, 1,467 Sardinian controls, 61,485 European ancestry cases, 60,860 European ancestry controls	10q26.13	FGFR2	rs2912780-?	0.506	4E-6		1.302	(1.164-1.456)	Affymetrix [2067645] (imputed)	N
1525	chr10	123337334	123337335	rs2981579	28864454	Lacson JCA	2017-09-01	Cancer Epidemiol Biomarkers Prev	Genome-Wide Testing of Exonic Variants and Breast Cancer Risk in the California Teachers Study.	Breast cancer (progesterone-receptor positive)	1,049 cases, 1,310 controls	NA	10q26.13	FGFR2	rs2981579-T	NR	5E-7		1.23		Illumina [129771]	N
1525	chr10	123337334	123337335	rs2981579	28864454	Lacson JCA	2017-09-01	Cancer Epidemiol Biomarkers Prev	Genome-Wide Testing of Exonic Variants and Breast Cancer Risk in the California Teachers Study.	Breast cancer (estrogen-receptor positive)	1,325 cases, 1,310 controls	NA	10q26.13	FGFR2	rs2981579-T		4E-7		1.23		Illumina [129771]	N
1525	chr10	123337334	123337335	rs2981579	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	10q26.13		rs2981579-A	0.55	3E-11		1.19	[1.11-1.23]	Affymetrix, Illumina [668499] (imputed)	N
1525	chr10	123337334	123337335	rs2981579	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	10q26.13	NR	rs2981579-A	0.4	1E-128		1.27	[1.24-1.29]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1525	chr10	123337334	123337335	rs2981579	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	10q26.13	NR	rs2981579-A	0.4	6E-164		1.27	[1.24-1.29]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1525	chr10	123337334	123337335	rs2981579	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	10q26.13	FGFR2	rs2981579-A	0.4	2E-170		1.27	[1.24-1.29]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1525	chr10	123337334	123337335	rs2981579	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	10q26.13	FGFR2	rs2981579-A	0.42	4E-31		1.43	[1.35-1.53]	Illumina [582886]	N
1525	chr10	123337334	123337335	rs2981579	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	10q26.13	FGFR2	rs2981579-T	0.41	2E-10		1.17	[1.07-1.27] (Het)	Illumina [528173]	N
1525	chr10	123338653	123338654	rs2912778	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	10q26.13	FGFR2	rs2912778-G	0.507	1E-19		1.201	[1.155-1.25]	Illumina [4946503] (imputed)	N
1526	chr10	123338974	123338975	rs1078806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.13	FGFR2	rs1078806-A	0.604579	2E-8	(-98 ms)	0.030945	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1526	chr10	123338974	123338975	rs1078806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	10q26.13	FGFR2	rs1078806-A	0.604579	1E-8	(-96 ms)	0.0313753	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1526	chr10	123338974	123338975	rs1078806	23354978	Rinella ES	2013-01-25	Hum Genet	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	10q26.13	FGFR2	rs1078806-C	0.39	2E-6	(Pooled P value)	1.43	[NR]	Affymetrix [435632]	N
1526	chr10	123340310	123340311	rs2981578	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q26.13		rs2981578-T	NR	2E-291		0.81	[0.81-0.82]	Affymetrix, Illumina [NR] (imputed)	N
1526	chr10	123340310	123340311	rs2981578	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	FGFR2	rs2981578-C	0.47	1E-245		1.23	[1.21-1.25] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1526	chr10	123340310	123340311	rs2981578	24143190	Low SK	2013-10-15	PLoS One	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls	2,885 Japanese ancestry cases, 3,395 Japanese ancestry controls	10q26.13	FGFR2	rs2981578-C	0.514	1E-12		1.225	[1.158-1.296]	Illumina [5335291] (imputed)	N
1526	chr10	123340431	123340432	rs35054928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	10q26.13		rs35054928-G	NR	9E-106		0.2194	[0.2-0.24] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1526	chr10	123340431	123340432	rs35054928	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	FGFR2	rs35054928-GC	0.4	2E-322		1.27	[1.25-1.3] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1526	chr10	123341016	123341029	rs377595512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	10q26.13		rs377595512-C	0.509351515	8E-22		0.18367667	[0.15-0.22] unit decrease	Illumina [13401000] (imputed)	N
1526	chr10	123341016	123341029	rs377595512	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	10q26.13		rs377595512-C	0.513325516	4E-24		0.8166771	[0.785289052-0.849319691]	Illumina [8919992] (imputed)	N
1526	chr10	123342706	123342707	rs45631632	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs45631632-A	NR	2E-11		1.2300123	[1.16-1.31]	Affymetrix [7846216] (imputed)	N
1526	chr10	123343908	123343909	rs1696840	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 34)	3,566 European ancestry individuals	4,680 European ancestry individuals	10q26.13		rs1696840-G	0.333333333	3E-8				Illumina [7417619] (imputed)	N
1526	chr10	123346115	123346116	rs2981575	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	10q26.13		rs2981575-?	NR	1E-9		1.04306	[1.03-1.06]	NR [688737]	N
1526	chr10	123346115	123346116	rs2981575	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q26.13		rs2981575-?	NR	1E-66		1.28222	[1.25-1.31]	NR [682398]	N
1526	chr10	123346115	123346116	rs2981575	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	10q26.13	NR	rs2981575-?		2E-54		1.29	[NR]	NR [41502298] (imputed)	N
1526	chr10	123346115	123346116	rs2981575	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	10q26.13		rs2981575-A	0.573	5E-7		1.0638298	[1.04-1.09]	Affymetrix, Illumina [42907111] (imputed)	N
1526	chr10	123346115	123346116	rs2981575	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	10q26.13	FGFR2	rs2981575-A	0.427	3E-6		1.0526316	[1.03-1.09]	Affymetrix, Illumina [42907111] (imputed)	N
1526	chr10	123346115	123346116	rs2981575	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	10q26.13	FGFR2	rs2981575-G	0.43	2E-8		1.27	[NR]	Affymetrix, Illumina [3378933] (imputed)	N
1526	chr10	123346115	123346116	rs2981575	21060860	Gaudet MM	2010-10-28	PLoS Genet	Common genetic variants and modification of penetrance of BRCA2-associated breast cancer.	Breast cancer in BRCA2 mutation carriers	899 European ancestry cases, 804 European ancestry controls	1,264 European ancestry cases, 1,222 European ancestry controls	10q26.13	FGFR2	rs2981575-?	0.42	1E-8		1.28	[1.18-1.39]	Affymetrix [592163]	N
1526	chr10	123346189	123346190	rs1219648	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	10q26.13	NR	rs1219648-G	0.39	6E-9		1.17	[1.11-1.23]	Affymetrix, Illumina [668499] (imputed)	N
1526	chr10	123346189	123346190	rs1219648	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	10q26.13	FGFR2	rs1219648-?	0.42	1E-30		1.31	[1.25-1.37]	Illumina [~ 296114]	N
1526	chr10	123346189	123346190	rs1219648	20872241	Li J	2010-09-26	Breast Cancer Res Treat	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry female cases, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	10q26.13	FGFR2	rs1219648-G	0.42	2E-13		1.32	[1.22-1.42]	Illumina [285984]	N
1526	chr10	123346189	123346190	rs1219648	17529973	Hunter DJ	2007-05-27	Nat Genet	A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer.	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	874 European ancestry cases, 1,478 European ancestry controls, 302 cases, 594 controls	10q26.13	FGFR2	rs1219648-G	0.40	1E-10		1.2	[1.07-1.42]	Illumina [528173]	N
1526	chr10	123348661	123348662	rs2912774	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	10q26.13	FGFR2	rs2912774-T	0.42	1E-13		0.48	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1526	chr10	123348661	123348662	rs2912774	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	10q26.13	FGFR2	rs2912774-T	0.4139	4E-13		0.4963	[0.36-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1526	chr10	123348661	123348662	rs2912774	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	10q26.13	FGFR2	rs2912774-T	0.42	6E-7		1.25	[1.14-1.36]	Affymetrix, Illumina [3378933] (imputed)	N
1526	chr10	123348661	123348662	rs2912774	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	10q26.13	FGFR2	rs2912774-?	0.44	3E-27		1.29	[1.23-1.35]	Illumina [1265548] (imputed)	N
1526	chr10	123349323	123349324	rs45631563	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs45631563-A	NR	2E-9				Affymetrix [7846216] (imputed)	N
1526	chr10	123349323	123349324	rs45631563	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	10q26.13		rs45631563-A	NR	1E-35		1.21	[1.18-1.25]	Affymetrix, Illumina [NR] (imputed)	N
1526	chr10	123349323	123349324	rs45631563	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	FGFR2	rs45631563-A	0.95	7E-37	(EA)	1.2345679	[1.18-1.28] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1526	chr10	123351323	123351324	rs2420946	23544012	Gaudet MM	2013-03-27	PLoS Genet	Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.	Breast cancer in BRCA2 mutation carriers	4,330 European ancestry affected women, 3,881 European ancestry unaffected women	NA	10q26.13	FGFR2	rs2420946-A	0.39	2E-14		1.27	[1.19-1.34]	Illumina [at least 200908] (imputed)	N
1526	chr10	123352219	123352220	rs3135724	27764800	Cox DG	2016-10-14	Oncotarget	GWAS in the SIGNAL/PHARE clinical cohort restricts the association between the FGFR2 locus and estrogen receptor status to HER2-negative breast cancer patients.	Estrogen receptor status in HER2 negative breast cancer	4,267 French ancestry estrogen receptor positive cases,  1,185 French ancestry estrogen receptor negative cases	NA	10q26.13	FGFR2	rs3135724-?	NR	5E-11		1.79	[1.49 - 2.13]	Illumina [914144] (imputed)	N
1526	chr10	123352316	123352317	rs2981582	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	10q26.13	NR	rs2981582-A	0.68	2E-8		1.18	[1.11-1.23]	Affymetrix, Illumina [668499] (imputed)	N
1526	chr10	123352316	123352317	rs2981582	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	10q26.13	FGFR2	rs2981582-A	0.38	2E-76		1.26	[1.23-1.30]	Perlegen [205586]	N
1526	chr10	123353868	123353869	rs3135718	27764800	Cox DG	2016-10-14	Oncotarget	GWAS in the SIGNAL/PHARE clinical cohort restricts the association between the FGFR2 locus and estrogen receptor status to HER2-negative breast cancer patients.	Estrogen receptor status in breast cancer	6,211 French ancestry estrogen receptor positive cases, 2,516 French ancestry estrogen receptor negative cases	NA	10q26.13	FGFR2	rs3135718-?	NR	6E-12		1.33	[1.23 - 1.45]	Illumina [914144] (imputed)	N
1526	chr10	123357481	123357482	rs41258305	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10q26.13	NR	rs41258305-?	NR	8E-7		0.092	[0.055-0.129] unit increase	Illumina [at least 560000] (imputed)	N
1526	chr10	123357481	123357482	rs41258305	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10q26.13	FGFR2	rs41258305-?	NR	8E-7		1.096	[1.057-1.137]	Illumina [13754664] (imputed)	N
1526	chr10	123405479	123405480	rs7902581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs7902581-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1526	chr10	123418402	123418403	rs74160658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	10q26.13	NR	rs74160658-?	NR	6E-6		0.9762	[0.58-1.37] unit increase	Illumina [at least 560000] (imputed)	N
1526	chr10	123422003	123422004	rs2936853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.13	RP11-62L18.3	rs2936853-T	NR	9E-10		0.0388211	[0.026-0.051] unit decrease	Affymetrix [321016] (imputed)	N
1526	chr10	123422433	123422434	rs7071275	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	10q26.13	NR	rs7071275-T	0.2	1E-6		1.15	[1.086-1.217]	Illumina [238825]	N
1526	chr10	123431244	123431245	rs1219515	26685716	Chang X	2015-12-21	Sci Rep	Genome-wide association study reveals two loci for serum magnesium concentrations in European-American children.	Magnesium levels	2,267 European American children	257 European American children, 15,366 European ancestry adults	10q26.13	FGFR2	rs1219515-A	NR	3E-7	(children)	0.053	[0.033-0.073] mg/dl decrease	Illumina [at least 507409] (imputed)	N
1526	chr10	123432187	123432188	rs2935713	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q26.13	intergenic	rs2935713-?	NR	9E-6				Illumina [501584]	N
1526	chr10	123436776	123436777	rs1620270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q26.13		rs1620270-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1526	chr10	123436949	123436950	rs1696803	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	NR	rs1696803-C	0.8367	2E-45	(EA)	0.116	[0.1-0.132] unit decrease	Illumina [~ 11800000] (imputed)	N
1526	chr10	123441375	123441376	rs78851119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.13		rs78851119-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1526	chr10	123441383	123441384	rs4752580	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs4752580-?	NR	8E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1526	chr10	123443604	123443605	rs4752582	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	10q26.13		rs4752582-A	NR	5E-9		0.0322	[0.021-0.043] unit decrease	Affymetrix [6193476] (imputed)	N
1526	chr10	123443604	123443605	rs4752582	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs4752582-?	NR	2E-10	(right cerebellum exterior)			NR [9227495] (imputed)	N
1526	chr10	123443604	123443605	rs4752582	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs4752582-?	NR	1E-11	(left cerebellum exterior)			NR [9227495] (imputed)	N
1526	chr10	123443740	123443741	rs12354821	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs12354821-T	NR	6E-7		1.095	[1.057-1.134]	Affymetrix [7846216] (imputed)	N
1526	chr10	123443740	123443741	rs12354821	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs12354821-T	NR	3E-10		1.0954	NR	Affymetrix [7846216] (imputed)	N
1526	chr10	123446984	123446985	rs75272608	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs75272608-?	NR	5E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1526	chr10	123446984	123446985	rs75272608	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs75272608-?	NR	2E-8	(left cerebellum exterior)			NR [9227495] (imputed)	N
1526	chr10	123460638	123460639	rs11200084	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.13	NR	rs11200084-?		5E-6				Illumina [4322238] (imputed)	N
1527	chr10	123476207	123476208	rs75482080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	10q26.13	NR	rs75482080-?	NR	2E-6		0.7611	[0.4-1.12] unit increase	Illumina [at least 560000] (imputed)	N
1527	chr10	123498425	123498426	rs11200120	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	10q26.13		rs11200120-?	NR	4E-7		1.11435	[1.07-1.16]	NR [682398]	N
1527	chr10	123531821	123531822	rs10510104	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	10q26.13	NR	rs10510104-C	0.160789	3E-6		0.081	[0.048-0.114] unit increase	NR [9260588] (imputed)	N
1527	chr10	123536489	123536490	rs4752593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	10q26.13		rs4752593-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1527	chr10	123553264	123553265	rs2173244	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.13	ATE1	rs2173244-T	0.655	4E-9		0.0104665	[0.007-0.014] unit decrease	Affymetrix [11880941] (imputed)	N
1527	chr10	123553391	123553392	rs11200159	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.13	ATE1	rs11200159-C	0.3449	4E-9		1.0236759		Affymetrix [11880941] (imputed)	N
1527	chr10	123554583	123554584	rs111605422	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	NR	rs111605422-A	0.0569	9E-13	(EA)	0.0936	[0.068-0.119] unit increase	Illumina [~ 11800000] (imputed)	N
1527	chr10	123579062	123579063	rs4478919	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs4478919-A	NR	5E-8		1.1305822	NR	Affymetrix [7846216] (imputed)	N
1527	chr10	123588947	123588948	rs6585763	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.13		rs6585763-?	NR	4E-17		0.0312053	[0.024-0.039] unit decrease	Affymetrix [20259828] (imputed)	N
1528	chr10	123625189	123625190	rs10510102	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	10q26.13	FGFR2	rs10510102-G	0.17	2E-6		1.12	[1.07-1.17]	Illumina [~ 296114]	N
1528	chr10	123637816	123637817	rs185838353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs185838353-C	5.70388E-4	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
1528	chr10	123663469	123663470	rs7073961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.13		rs7073961-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1528	chr10	123663943	123663944	rs7899628	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.13		rs7899628-?	NR	1E-18		0.0183728	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1528	chr10	123663943	123663944	rs7899628	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	NR	rs7899628-T	0.3585	9E-10	(EA)	0.0396	[0.027-0.052] unit decrease	Illumina [~ 11800000] (imputed)	N
1528	chr10	123676661	123676662	rs7077302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q26.13		rs7077302-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1528	chr10	123685955	123685956	rs4752622	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	10q26.13		rs4752622-?	NR	4E-9		1.2061	[0.8-1.61] unit decrease	Affymetrix [NR] (imputed)	N
1528	chr10	123688151	123688152	rs10887024	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on monocytes	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q26.13		rs10887024-T	0.35091	3E-8		0.1469	[0.095-0.199] unit decrease	Illumina [18218967] (imputed)	N
1528	chr10	123697909	123697910	rs56782495	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.13	ATE1-AS1	rs56782495-G	0.914153	4E-15		0.0261749	[0.02-0.033] unit increase	NR [13737936] (imputed)	N
1528	chr10	123707382	123707383	rs10749436	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.13	ATE1-AS1	rs10749436-G	0.757482	1E-11		0.0148891	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1528	chr10	123707382	123707383	rs10749436	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.13		rs10749436-?	NR	6E-18		0.0197661	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1528	chr10	123707382	123707383	rs10749436	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.13	ATE1-AS1	rs10749436-G	0.759226	3E-10		0.0248902	[0.017-0.033] unit decrease	NR [17166351] (imputed)	N
1528	chr10	123707382	123707383	rs10749436	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.13	ATE1-AS1	rs10749436-G	0.759091	8E-8	(women)	0.0282545	[0.018-0.039] unit decrease	NR [17166351] (imputed)	N
1529	chr10	123769888	123769889	rs75449825	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	10q26.13	TACC2	rs75449825-G	NR	2E-7		0.13	[0.091-0.169] unit increase	Illumina [6200495] (imputed)	N
1529	chr10	123770621	123770622	rs59675243	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	10q26.13	TACC2	rs59675243-A	NR	1E-7		0.13	[0.091-0.169] unit increase	Illumina [6200495] (imputed)	N
1529	chr10	123771131	123771132	rs58356853	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	10q26.13	TACC2	rs58356853-T	NR	3E-7		0.12	[0.081-0.159] unit increase	Illumina [6200495] (imputed)	N
1529	chr10	123777556	123777557	rs561635855	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q26.13	NR	rs561635855-?	NR	4E-6		0.0076482	[0.0044-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1529	chr10	123801421	123801422	rs2253762	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.13	NR	rs2253762-C	0.2971	2E-9	(EA)	0.0419	[0.028-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
1529	chr10	123851826	123851827	rs11200392	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	TACC2	rs11200392-A	0.368	3E-6	(Height change )	0.04	[NR] cm/y increase	Illumina [899892]	N
1530	chr10	123880062	123880063	rs870274	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	10q26.13		rs870274-?	NR	7E-6	(ser_lg_lmp)	1.7		Illumina [11595112] (imputed)	N
1530	chr10	123884802	123884803	rs10749446	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	10q26.13	TACC2	rs10749446-T	0.1362	7E-6		0.1286	[0.073-0.184] unit increase	Illumina [up to 38043574] (imputed)	N
1530	chr10	123887258	123887259	rs10887089	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	10q26.13		rs10887089-C	0.889648	4E-6		0.0127498	[0.0048-0.0207] unit decrease	Illumina [7666802] (imputed)	N
1530	chr10	123901963	123901964	rs10788251	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	10q26.13	NR	rs10788251-C	NR	4E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1530	chr10	123913329	123913330	rs17103138	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		10q26.13	TACC2	rs17103138-?	0.086	2E-7			[NR]	Affymetrix, Illumina [152234]	N
1530	chr10	123936843	123936844	rs927428	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.13	BTBD16	rs927428-?	NR	9E-6	(gamma aminoisobutyric acid)	0.39482433	[0.22-0.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1530	chr10	123937854	123937855	rs192386132	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	10q26.13	TACC2	rs192386132-A	0.003	3E-8		1.981	[1.28-2.68] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1531	chr10	123994155	123994156	rs1555487	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q26.13		rs1555487-T	0.295	3E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1531	chr10	123996969	123996970	rs61753077	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.13		rs61753077-A	0.05	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
1531	chr10	123996969	123996970	rs61753077	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.13	NR	rs61753077-A	0.0467	3E-10				NR [9056863] (imputed)	N
1531	chr10	124012546	124012547	rs736456	33510140	Lin WY	2021-01-28	Nat Commun	Genome-wide association study identifies risk loci for progressive chronic lymphocytic leukemia.	Chronic lymphocytic leukemia (time to first treatment)	755 European ancestry individuals	87 individuals	10q26.13	TACC2	rs736456-G	0.10	3E-9		1.78	[1.47-2.15]	Illumina [5199911] (imputed)	N
1531	chr10	124015985	124015986	rs10788264	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q26.13	TACC2	rs10788264-A	0.4865	4E-11	(European)	0.0411	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1531	chr10	124015985	124015986	rs10788264	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	10q26.13	TACC2	rs10788264-A	0.4815	3E-9		0.0338	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1531	chr10	124016441	124016442	rs11200509	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	10q26.13	TACC2	rs11200509-C	0.17	1E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1531	chr10	124028140	124028141	rs10749452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.13		rs10749452-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1531	chr10	124030740	124030741	rs7069328	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.13		rs7069328-?	NR	1E-15		0.0157961	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1531	chr10	124030740	124030741	rs7069328	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.13	BTBD16	rs7069328-G	0.471078	2E-8		0.0193665	[0.013-0.026] unit increase	NR [17166351] (imputed)	N
1531	chr10	124030740	124030741	rs7069328	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.13	BTBD16	rs7069328-G	0.470833	6E-6	(women)	0.0205397	[0.011-0.03] unit increase	NR [17166351] (imputed)	N
1531	chr10	124035291	124035292	rs74411266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.13		rs74411266-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1531	chr10	124037598	124037599	rs11596483	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	10q26.13	NR	rs11596483-?	NR	6E-6	(order_Rhizobiales)	0.5867066	[0.3-0.88] unit increase	Affymetrix [210924]	N
1531	chr10	124039656	124039657	rs4752678	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.13	BTBD16	rs4752678-T	0.468028	2E-20		0.017101	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
1531	chr10	124086756	124086757	rs6585812	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.13	BTBD16	rs6585812-?		5E-6				Illumina [4322238] (imputed)	N
1531	chr10	124111172	124111173	rs35444643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.13	RNU6-728P	rs35444643-T	NR	5E-8		0.0167366	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1531	chr10	124124668	124124669	rs74159124	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	10q26.13	HTRA1	rs74159124-C	0.0596997413971925	2E-7		0.0059034	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1532	chr10	124131175	124131176	rs4752689	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.13	PLEKHA1	rs4752689-A	0.5839	1E-26		0.0205	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1532	chr10	124134802	124134803	rs71486610	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.13		rs71486610-C	0.47	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
1532	chr10	124134802	124134803	rs71486610	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q26.13	PLEKHA1	rs71486610-C	0.470919	4E-8		0.017187	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1532	chr10	124134802	124134803	rs71486610	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q26.13	PLEKHA1	rs71486610-C	0.476652	3E-15		0.020349	[0.015-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1532	chr10	124139909	124139910	rs3850765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.13		rs3850765-C	NR	4E-33		0.0156	[0.013-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1532	chr10	124139909	124139910	rs3850765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	10q26.13		rs3850765-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1532	chr10	124142628	124142629	rs11200595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	10q26.13		rs11200595-C	NR	3E-8		0.0422	[0.027-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1532	chr10	124149351	124149352	rs7088058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	10q26.13		rs7088058-T	NR	4E-10		0.0559	[0.038-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1532	chr10	124149351	124149352	rs7088058	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	10q26.13	PLEKHA1	rs7088058-T	0.412751	4E-10		0.057947975	[0.04-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
1532	chr10	124149351	124149352	rs7088058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	10q26.13		rs7088058-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1532	chr10	124150342	124150342	rs112820281	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	10q26.13	PLEKHA1	rs112820281-C	0.41	1E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1532	chr10	124154625	124154626	rs11200607	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q26.13	NR	rs11200607-?	NR	7E-7	(male)	0.20046	[0.12-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
1532	chr10	124154625	124154626	rs11200607	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	10q26.13	NR	rs11200607-?	NR	7E-10		0.15757	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1532	chr10	124159837	124159838	rs113306148	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	10q26.13	PLEKHA1, MIR3941	rs113306148-A	0.013	3E-6		3.067		Illumina [131847]	N
1532	chr10	124163610	124163611	rs4752693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q26.13		rs4752693-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1532	chr10	124164653	124164654	rs10082476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.13	PLEKHA1	rs10082476-G	NR	3E-12		0.0228215	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1532	chr10	124165614	124165615	rs6585827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.13		rs6585827-A	NR	2E-18		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1532	chr10	124165614	124165615	rs6585827	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	10q26.13	NR	rs6585827-A	0.47	3E-9		0.019	[0.013-0.025] z score increase	Affymetrix [up to 10400000] (imputed)	N
1532	chr10	124165614	124165615	rs6585827	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	10q26.13	PLEKHA1	rs6585827-G	0.43	2E-6		0.05	[0.03-0.07] cm decrease	Illumina [420885]	N
1532	chr10	124167511	124167512	rs2421016	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	10q26.13	PLEKHA1	rs2421016-T	0.47376147291859	1E-10		0.0458	[0.032-0.06] unit decrease	NR [5035015] (imputed)	N
1532	chr10	124167511	124167512	rs2421016	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q26.13	PLEKHA1	rs2421016-T	0.4652	2E-8	(EA)	0.0564	[0.037-0.076] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1532	chr10	124167511	124167512	rs2421016	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	10q26.13	PLEKHA1	rs2421016-C	0.53	4E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1532	chr10	124167511	124167512	rs2421016	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	10q26.13	PLEKHA1	rs2421016-T	0.48	6E-9		0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1532	chr10	124179298	124179299	rs4311997	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	10q26.13	PLEKHA1	rs4311997-?	NA	8E-9		1.35	[0.9-1.8] unit increase	Affymetrix [5541230] (imputed)	N
1532	chr10	124186713	124186714	rs2292626	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q26.13	PLEKHA1	rs2292626-?	NR	4E-12		0.020049892	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1532	chr10	124186713	124186714	rs2292626	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	10q26.13	PLEKHA1	rs2292626-T	0.473116	1E-8		0.017211	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1532	chr10	124186713	124186714	rs2292626	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	10q26.13	PLEKHA1	rs2292626-T	0.477928	3E-14		0.019617	[0.015-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1532	chr10	124186713	124186714	rs2292626	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	10q26.13	PLEKHA1	rs2292626-T	0.479602	2E-8		0.0386	[0.025-0.052] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1532	chr10	124186713	124186714	rs2292626	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	10q26.13	PLEKHA1	rs2292626-C	0.5	2E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1532	chr10	124189196	124189197	rs1045216	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	10q26.13	PLEKHA1	rs1045216-G	0.599	8E-10		1.0526316	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1532	chr10	124192429	124192430	rs10510110	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	10q26.13		rs10510110-T	0.528264	2E-8		0.0515371	[0.034-0.069] increase	Affymetrix [11014269] (imputed)	N
1532	chr10	124192429	124192430	rs10510110	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	10q26.13	PLEKHA1	rs10510110-C		1E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [2500000] (imputed)	N
1532	chr10	124193180	124193181	rs2280141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	10q26.13		rs2280141-G	NR	2E-10		0.0403	[0.028-0.053] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1532	chr10	124193180	124193181	rs2280141	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	10q26.13	NR	rs2280141-G	0.4801	1E-13		0.0453	[0.033-0.057] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1532	chr10	124193180	124193181	rs2280141	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q26.13	NR	rs2280141-G	0.512	6E-21		0.0455	[0.036-0.055] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1532	chr10	124193180	124193181	rs2280141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs2280141-?	NR	4E-44				NR [~ 8900000] (imputed)	N
1532	chr10	124193180	124193181	rs2280141	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	10q26.13	PLEKHA1	rs2280141-T	0.5161	1E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1532	chr10	124195484	124195485	rs7072204	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	10q26.13	NR	rs7072204-G	0.5738	2E-8		0.0492	[0.032-0.066] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1532	chr10	124195484	124195485	rs7072204	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	10q26.13	PLEKHA1	rs7072204-A	0.43	2E-8		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1532	chr10	124195484	124195485	rs7072204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q26.13	Intergenic	rs7072204-A	0.5273	2E-8	(MTAG)	0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1532	chr10	124201070	124201071	rs78438709	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	10q26.13	Intergenic	rs78438709-G	NR	9E-12		0.0186	[0.013-0.024] unit decrease	Affymetrix [9304965] (imputed)	N
1532	chr10	124203786	124203787	rs61871744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	10q26.13		rs61871744-C	NR	3E-9		0.0406	[0.027-0.054] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1532	chr10	124205303	124205304	rs72834437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q26.13		rs72834437-G	NR	2E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1532	chr10	124210159	124210160	rs2223089	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	10q26.13	ARMS2, HTRA1	rs2223089-?	0.92	3E-8		1.0752687	[1.05-1.1]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1532	chr10	124213045	124213046	rs61871747	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	10q26.13	NR	rs61871747-?	NR	9E-7			[NR]	Illumina [5432814] (imputed)	N
1532	chr10	124213143	124213145	rs370974631	32741009	Guenther F	2020-08-02	Genet Epidemiol	Chances and challenges of machine learning-based disease classification in genetic association studies illustrated on age-related macular degeneration.	Age-related macular degeneration	3,544 European ancestry cases, 44,521 European ancestry controls	NA	10q26.13	ARMS2, HTRA1	rs370974631-C	0.225	2E-20		0.26151043	[0.21-0.32] unit increase	Affymetrix [11567158] (imputed)	N
1532	chr10	124214250	124214251	rs10490923	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.13		rs10490923-A	0.1235	2E-15		0.2603774	[0.19-0.33] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1532	chr10	124214250	124214251	rs10490923	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.13		rs10490923-A	0.1234	5E-10		0.145692	[0.099-0.192] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1532	chr10	124214250	124214251	rs10490923	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	10q26.13		rs10490923-A	0.116	1E-8		5.68491	z score increase	Affymetrix, Illumina [246710] (imputed)	N
1532	chr10	124214250	124214251	rs10490923	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.13		rs10490923-A	0.1234	6E-9		0.11947387	[0.078-0.161] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	28703135	Ruamviboonsuk P	2017-07-13	J Hum Genet	Genome-wide association study of neovascular age-related macular degeneration in the Thai population.	Neovascular age-related macular degeneration	377 Thai ancestry cases, 1,074 Thai ancestry controls	222 Thai ancestry cases, 623 Thai ancestry controls	10q26.13	ARMS2	rs10490924-A	0.36	7E-17		2.12	[1.79-2.51]	Illumina [958497]	N
1532	chr10	124214447	124214448	rs10490924	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	10q26.13	ARMS2, HTRA1	rs10490924-?	NR	1E-103		2.42	[NR]	Illumina [4471719] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	10q26.13	ARMS2, BTBD16, HTRA, PLEKHA1	rs10490924-A	0.35	8E-27		2.28	[1.96-2.65]	Affymetrix [2543887] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	10q26.13	ARMS2, HTRA1	rs10490924-T	0.3	4E-540		2.76	[2.72-2.80]	Affymetrix, Illumina [2442884] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	10q26.13	ARMS2, HTRA1	rs10490924-T	.206	7E-47		2.52	[2.24-2.83]	Affymetrix, Illumina [6036699] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	10q26.13	ARMS2, HTRA1	rs10490924-T	0.206	2E-138		3.67	[3.33-4.05]	Affymetrix, Illumina [6036699] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (CNV vs. GA)	1,775 European ancestry choroidal neovascularization cases, 819 European ancestry geographic atrophy cases,	4,515 European and unknown ancestry choroidal neovascularization cases, 868 European and unknown ancestry geographic atrophy cases	10q26.13	ARMS2, HTRA1	rs10490924-T	0.438	7E-14		1.38	[NR]	Affymetrix, Illumina [6036699] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	10q26.13	ARMS2, HTRA1	rs10490924-T	0.21	3E-72		3.0	[2.64-3.40]	Illumina [2272849] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	10q26.13	HTRA1	rs10490924-T	0.21	4E-322		2.94	[NR]	Affymetrix [6036699] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	10q26.13	ARMS2, HTRA1	rs10490924-T	NR	1E-60		2.75	[NR]	Affymetrix [> 361556] (imputed)	N
1532	chr10	124214447	124214448	rs10490924	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	10q26.13	ARMS2, HTRA1	rs10490924-?	NR	5E-119				Affymetrix [632932]	N
1532	chr10	124215197	124215198	rs36212732	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q26.13	NR	rs36212732-A		9E-11		0.09	[0.07-0.11] unit increase	NR [NR]	N
1532	chr10	124215314	124215315	rs3750848	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (extreme sampling)	720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls	70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls	10q26.13	ARMS2, BTBD16, PLEKHA1, HTRA1	rs3750848-C	0.37	3E-29		3.12	[2.55-3.80]	Affymetrix [2543887] (imputed)	N
1532	chr10	124215420	124215421	rs3750847	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	10q26.13		rs3750847-T	0.2149286	8E-73		1.72		Affymetrix [15377238] (imputed)	N
1532	chr10	124215420	124215421	rs3750847	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	10q26.13	ARMS2, HTRA1	rs3750847-T	0.22	1E-116		1.47	[1.44-1.5]	Affymetrix, Illumina [11702853] (imputed)	N
1532	chr10	124215420	124215421	rs3750847	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q26.13	PLEKHA1, ARMS2, HTRA1	rs3750847-?		6E-23				Affymetrix, Illumina [NR] (imputed)	N
1532	chr10	124215564	124215565	rs3750846	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	10q26.13	ARMS2, HTRA1	rs3750846-?	NR	7E-735	(EA)	2.81		Illumina [12023830] (imputed)	N
1532	chr10	124219274	124219275	rs3793917	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q26.13	ARMS2, HTRA1	rs3793917-?	0.26	1E-25		1.39	[1.32-1.49]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1532	chr10	124219274	124219275	rs3793917	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	10q26.13	ARMS2, HTRA1	rs3793917-?	0.2	4E-24	(EA)	1.45	[1.35-1.56]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1532	chr10	124219274	124219275	rs3793917	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	10q26.13	ARMS2, HTRA1	rs3793917-G	0.164	4E-60		3.4	[2.94-3.94]	Illumina [~ 2500000] (imputed)	N
1532	chr10	124220543	124220544	rs11200638	28703135	Ruamviboonsuk P	2017-07-13	J Hum Genet	Genome-wide association study of neovascular age-related macular degeneration in the Thai population.	Neovascular age-related macular degeneration	377 Thai ancestry cases, 1,074 Thai ancestry controls	222 Thai ancestry cases, 623 Thai ancestry controls	10q26.13	HTRA1	rs11200638-A	0.36	5E-17		2.12	[1.79-2.51]	Illumina [958497]	N
1532	chr10	124220543	124220544	rs11200638	17053108	Dewan A	2006-10-19	Science	HTRA1 promoter polymorphism in wet age-related macular degeneration.	Age-related macular degeneration (wet)	96 South East Asian ancestry cases, 130 South East Asian ancestry controls	NA	10q26.13	HTRA1	rs11200638-A	NR	8E-12		1.6	[0.71-3.61]	Affymetrix [97824]	N
1532	chr10	124223943	124223944	rs2248799	32277175	Han X	2020-04-10	J Hum Genet	Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.	Age-related macular degeneration (MTAG)	37,342 European ancestry cases, 92,890 European ancestry controls	7,126 European ancestry cases, 174,286 European ancestry controls	10q26.13	HTRA1	rs2248799-T	0.49	3E-412		1.84	[1.79-1.89]	NR [NR] (imputed)	N
1532	chr10	124226629	124226630	rs2284665	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	10q26.13	HTRA1, ARMS2	rs2284665-T	0.3	8E-43		2.06		Illumina [8974355] (imputed)	N
1532	chr10	124226629	124226630	rs2284665	28775256	Kawashima-Kumagai K	2017-08-03	Sci Rep	A genome-wide association study identified a novel genetic loci STON1-GTF2A1L/LHCGR/FSHR for bilaterality of neovascular age-related macular degeneration.	Laterality in neovascular age-related macular degeneration	803 Japanese ancestry unilateral cases, 321 Japanese ancestry bilateral cases	132 Japanese ancestry unilateral cases, 36 Japanese ancestry bilateral cases, 78 Asian ancestry unilateral cases, 24 Asian ancestry bilateral cases	10q26.13	HTRA1, ARMS2	rs2284665-T	0.4	2E-9		1.724138	[1.45-2.04]	Illumina [581252]	N
1532	chr10	124226792	124226793	rs2672596	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SRL	5,362 Icelandic ancestry individuals	NA	10q26.13		rs2672596-A	0.2317	9E-20		0.196745	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1532	chr10	124227623	124227624	rs60401382	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	10q26.13	HTRA1	rs60401382-C	0.7	7E-8		1.05	[1.03-1.07]	NR [~ 8000000] (imputed)	N
1532	chr10	124229202	124229203	rs11200643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q26.13		rs11200643-T	0.446036	3E-11		0.0134931	[0.0095-0.0175] unit increase	Illumina [13479295] (imputed)	N
1532	chr10	124230611	124230612	rs12571363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q26.13		rs12571363-?	NR	8E-27				NR [~ 8900000] (imputed)	N
1532	chr10	124232419	124232420	rs72834448	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q26.13	HTRA1	rs72834448-A	0.1195	8E-10		0.2613	[0.18-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
1532	chr10	124233180	124233181	rs79043147	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q26.13	HTRA1	rs79043147-T	0.0686	2E-6		0.0576	[0.034-0.081] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1532	chr10	124233180	124233181	rs79043147	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	10q26.13	HTRA1	rs79043147-T	0.0686	8E-7		0.0576	[0.035-0.081] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1532	chr10	124233180	124233181	rs79043147	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	10q26.13	HTRA1	rs79043147-T	0.0686	4E-7		0.0583	[0.036-0.081] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1532	chr10	124233180	124233181	rs79043147	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10q26.13	HTRA1	rs79043147-T	0.0686	1E-6		0.0583	[0.035-0.082] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1532	chr10	124234036	124234037	rs2142308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.13		rs2142308-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1532	chr10	124235225	124235226	rs72834453	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	10q26.13	HTRA1	rs72834453-T	0.8756	3E-12		0.3246	[0.23-0.42] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1532	chr10	124237337	124237338	rs2421028	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	10q26.13	HTRA1	rs2421028-?	NR	2E-12		0.0345695	[0.025-0.044] unit increase	Illumina [4804024] (imputed)	N
1532	chr10	124237497	124237498	rs4237540	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	10q26.13	HTRA1	rs4237540-A	0.548	5E-10		0.04	[0.028-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
1532	chr10	124237611	124237612	rs4752700	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	10q26.13	HTRA1	rs4752700-A	0.5508	8E-11		0.0332	[0.023-0.043] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1532	chr10	124244968	124244969	rs2268344	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	10q26.13	HTRA1	rs2268344-T	0.7666	4E-7		0.0333	[0.02-0.046] unit decrease	NR [8041861] (imputed)	N
1532	chr10	124249043	124249044	rs151165026	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	10q26.13		rs151165026-?	NR	4E-22		0.347883	[0.27-0.42] unit decrease	NR [9800000] (imputed)	N
1533	chr10	124273670	124273671	rs2293871	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q26.13		rs2293871-?	NR	6E-6		13.91	[7.87-19.95] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1533	chr10	124273670	124273671	rs2293871	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		10q26.13	HTRA1	rs2293871-T	0.23	2E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1533	chr10	124274793	124274794	rs28596486	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	10q26.13	HTRA1	rs28596486-C	0.142078	8E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1533	chr10	124297636	124297637	rs4279944	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	10q26.13	HTRA1	rs4279944-T	0.1514	2E-10		0.0218	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1533	chr10	124318118	124318119	rs3758430	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		10q26.13	C8orf31	rs3758430-A	0.01	2E-6		1.901	[1.13-2.68] unit decrease	Illumina [640625] (imputed)	N
1533	chr10	124319751	124319752	rs3019487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG1A	5,350 Icelandic ancestry individuals	NA	10q26.13		rs3019487-A	0.3211	4E-14		0.140742	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1534	chr10	124392282	124392283	rs41317030	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DMBT1	rs41317030-?	NR	2E-9	(female)	1.18247	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr10	124471469	124471470	rs78939407	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.13	NR	rs78939407-A	0.02613	5E-10	(PLD3)	0.01979	NR unit increase	Illumina [1671387] (imputed)	N
1534	chr10	124491039	124491040	rs17104017	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.13	NR	rs17104017-?	NR	2E-6				Affymetrix [NR]	N
1534	chr10	124501078	124501079	rs34772214	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.13	NR	rs34772214-C	0.0122	2E-9	(AMBP)	0.03533	NR unit increase	Illumina [1671387] (imputed)	N
1534	chr10	124514137	124514138	rs10794613	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	10q26.13	FLJ46361	rs10794613-G	0.21	3E-6		1.43		Illumina [~ 6300000] (imputed)	N
1535	chr10	124535256	124535257	rs142651386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q26.13	NR	rs142651386-A	0.999806	2E-11		3.48699	[2.47-4.51] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1535	chr10	124610026	124610027	rs1891110	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	10q26.13	NR	rs1891110-A	NR	2E-31		0.021799302	[0.018-0.025] unit increase	Illumina [242289]	N
1535	chr10	124610026	124610027	rs1891110	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	10q26.13	NR	rs1891110-A	0.56	2E-12		0.022	unit increase	Illumina [242289]	N
1535	chr10	124632666	124632667	rs79749804	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	10q26.13	FAM24B	rs79749804-C	0.01617	8E-7		12.17	[5.39-27.46]	Affymetrix [7675561] (imputed)	N
1536	chr10	124657808	124657809	rs7902274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q26.13	NR	rs7902274-G	NR	5E-8		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1536	chr10	124657808	124657809	rs7902274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q26.13		rs7902274-G	NR	6E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1536	chr10	124657808	124657809	rs7902274	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	10q26.13	NR	rs7902274-G	NR	3E-9		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1536	chr10	124677898	124677899	rs6599636	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	10q26.13	intergenic	rs6599636-G	0.5362	1E-16		0.02932023	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1536	chr10	124686655	124686656	rs10794579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	10q26.13		rs10794579-C	NR	4E-14		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1536	chr10	124686655	124686656	rs10794579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	10q26.13		rs10794579-C	NR	4E-14		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1536	chr10	124686655	124686656	rs10794579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q26.13	NR	rs10794579-C	0.575608	8E-13		0.01395	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1536	chr10	124686655	124686656	rs10794579	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	10q26.13	NR	rs10794579-T	0.42467	2E-25		0.0201777	[0.016-0.024] unit decrease	Affymetrix [15000001]	N
1536	chr10	124686655	124686656	rs10794579	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	10q26.13	ACADSB	rs10794579-?	NR	7E-20		0.0237	[0.019-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
1536	chr10	124692585	124692586	rs4980169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	10q26.13	C10orf88	rs4980169-G	0.576128	9E-13		0.01626857	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr10	124692585	124692586	rs4980169	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	10q26.13	C10orf88	rs4980169-G	NR	4E-10		0.0241974	[0.016-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs7904973-G	0.428378	8E-48				Affymetrix, Illumina [22063850] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q26.13	NR	rs7904973-G	0.424768	3E-52		0.028919	[0.025-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q26.13	C10orf88	rs7904973-T	NR	8E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	10q26.13	C10orf88	rs7904973-T	NR	4E-13				Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q26.13	C10orf88	rs7904973-T	NR	3E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	10q26.13	C10orf88	rs7904973-T	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q26.13	C10orf88	rs7904973-T	NR	2E-6	(EA)	0.862	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	10q26.13	C10orf88	rs7904973-T	NR	1E-9		0.809	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q26.13	C10orf88	rs7904973-T	NR	4E-6	(EA)	1.105	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	10q26.13	C10orf88	rs7904973-T	NR	3E-9		0.92	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1536	chr10	124693586	124693587	rs7904973	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q26.13	C10orf88	rs7904973-T	0.5573	1E-14		0.0203	[0.015-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1536	chr10	124704514	124704516	rs66819430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	10q26.13	C10orf88	rs66819430-G	0.575885	2E-40		0.029947344	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr10	124704525	124704527	rs10604015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	10q26.13		rs10604015-G	NR	5E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1536	chr10	124704694	124704695	rs9423289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	10q26.13	C10orf88	rs9423289-T	0.576177	3E-11		0.014932032	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr10	124704694	124704695	rs9423289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	10q26.13	C10orf88	rs9423289-T	0.576159	3E-11		0.014985361	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1536	chr10	124704694	124704695	rs9423289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs9423289-T	0.573195	6E-13				Affymetrix, Illumina [20825802] (imputed)	N
1536	chr10	124704694	124704695	rs9423289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q26.13		rs9423289-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1536	chr10	124704694	124704695	rs9423289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q26.13		rs9423289-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1536	chr10	124705306	124705307	rs12246352	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	10q26.13	C10orf88	rs12246352-A	0.896104	7E-14		0.025694	[0.019-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1536	chr10	124705306	124705307	rs12246352	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	10q26.13	C10orf88	rs12246352-A	0.89611	5E-13		0.0246753	[0.018-0.031] unit decrease	Affymetrix [NR] (imputed)	N
1536	chr10	124729875	124729876	rs7069346	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	10q26.13	intergenic	rs7069346-T	0.3	3E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1536	chr10	124744310	124744311	rs117915310	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	10q26.13	PSTK	rs117915310-G	0.0143	3E-7		13.78	[6.03-31.47]	Affymetrix [7675561] (imputed)	N
1537	chr10	124850399	124850400	rs188352979	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (number of drugs prescribed)	3,452 European ancestry individuals	NA	10q26.13	ACADSB, HMX3	rs188352979-?		4E-7		0.33	[0.2-0.46] unit increase	NR [7395460] (imputed)	N
1537	chr10	124850399	124850400	rs188352979	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (> 2 drugs prescribed)	250 European ancestry cases, 3,202 European ancestry controls, 109 cases, 668 controls	NA	10q26.13	ACADSB, HMX3	rs188352979-?		3E-7		2.87	[2.47-3.28]	NR [7120598] (imputed)	N
1537	chr10	124852733	124852734	rs182041872	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (number of drugs prescribed)	3,452 European ancestry individuals	NA	10q26.13	ACADSB, HMX3	rs182041872-?		5E-7		0.3	[0.18-0.42] unit increase	NR [7395460] (imputed)	N
1537	chr10	124860025	124860026	rs7078209	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	10q26.13	intergenic	rs7078209-G	0.6751	8E-6	(Ordinal I)	0.2658	[0.15-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1537	chr10	124860025	124860026	rs7078209	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	10q26.13	intergenic	rs7078209-G	0.6747	5E-6	(Ordinal II)	0.2772	[0.16-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1537	chr10	124860025	124860026	rs7078209	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	10q26.13	intergenic	rs7078209-G	0.6744	4E-6	(Case/control)	0.2812	[0.16-0.4] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1537	chr10	124865996	124865997	rs4980177	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	10q26.13	ACADSB	rs4980177-A	0.46	6E-6		4.57	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
1537	chr10	124887124	124887125	rs61862032	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	10q26.13	HMX3	rs61862032-T	0.98	9E-6	(Age 20-60 years)	0.1957	[0.11-0.28] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1538	chr10	124928951	124928952	rs7918913	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	10q26.13	BUB3	rs7918913-C	0.374	5E-6		0.59	[0.47-0.74]	Affymetrix, Illumina [82996] (imputed)	N
1538	chr10	124929270	124929271	rs10794599	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.13	HMX2	rs10794599-?	NR	6E-6	(kynurenic acid)	0.21346079	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1538	chr10	124969000	124969001	rs12411769	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	10q26.13	OTTHUMG00000019196	rs12411769-A	NR	2E-6		1.78	[1.04-2.52] unit decrease	Affymetrix, Illumina [2354422] (imputed)	N
1538	chr10	124988152	124988153	rs11597068	24045676	Pyun JA	2013-09-16	Menopause	Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.	Menopause (age at onset)	1,827 Korean ancestry females	NA	10q26.13	RPS26P39, BUB3	rs11597068-G	0.939	1E-7		1.37	[0.86-1.88] unit increase	Affymetrix [343107]	N
1538	chr10	124988588	124988589	rs766295	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.13	NR	rs766295-?	NR	3E-8				Affymetrix [NR]	N
1538	chr10	124992504	124992505	rs12414988	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	10q26.13	BUB3	rs12414988-A	0.2086	5E-8		1.0240463	[NR]	Illumina [12493444] (imputed)	N
1538	chr10	125002716	125002717	rs7075615	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	10q26.13	BUB3	rs7075615-?	NR	4E-9		0.0519	NR L increase	Affymetrix [9390170] (imputed)	N
1538	chr10	125003629	125003630	rs7089041	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	10q26.13	BUB3, GPR26	rs7089041-?	NR	4E-6				Illumina [at least 653030]	N
1538	chr10	125016500	125016501	rs7915425	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	10q26.13	LOC100131719, GPR26	rs7915425-?	NR	4E-6		2.34	[1.62-3.39]	Illumina [457310]	N
1538	chr10	125016500	125016501	rs7915425	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	10q26.13	NR	rs7915425-T	NR	8E-10		1.014	unit increase	Affymetrix [14661600] (imputed)	N
1538	chr10	125016500	125016501	rs7915425	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	10q26.13		rs7915425-T	0.1758	3E-10		0.02028	[0.014-0.027] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1539	chr10	125050133	125050134	rs7099339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	10q26.13		rs7099339-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1539	chr10	125077918	125077919	rs34936836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs34936836-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1539	chr10	125093879	125093880	rs17665139	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	10q26.13	NR	rs17665139-T	0.149	7E-10		0.0114182	[0.0078-0.015] unit decrease	NR [~ 9732723] (imputed)	N
1539	chr10	125093879	125093880	rs17665139	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	10q26.13	NR	rs17665139-T	0.149	2E-8		0.011560138	[0.0075-0.0156] unit decrease	NR [~ 10000000] (imputed)	N
1539	chr10	125124883	125124884	rs6599694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	10q26.13		rs6599694-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1540	chr10	125207210	125207211	rs845093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.13	NR	rs845093-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1540	chr10	125207500	125207501	rs17666963	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	10q26.13	GPR26	rs17666963-T	NR	9E-6	(Dichotomous variable)	2.28	[1.58-3.28]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1540	chr10	125208558	125208559	rs11248534	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	10q26.13	NR	rs11248534-T	0.229	5E-7	(Trans/trans-18:2, EA)	0.0023	[0.0013-0.0033] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1540	chr10	125218174	125218175	rs705139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.13		rs705139-A	NR	5E-17		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1540	chr10	125220035	125220036	rs845084	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q26.13	GPR26	rs845084-G	0.741579	4E-10		0.00985344	[0.0068-0.0129] unit decrease	Affymetrix [12370749]	N
1540	chr10	125220035	125220036	rs845084	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.13	NR	rs845084-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1540	chr10	125220035	125220036	rs845084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.13		rs845084-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1540	chr10	125220035	125220036	rs845084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q26.13	NA	rs845084-A	0.2666	3E-12		0.0136	[0.0099-0.0173] unit increase	NR [~ 27400000] (imputed)	N
1540	chr10	125226177	125226178	rs705145	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	10q26.13	NR	rs705145-C	0.6475	3E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1540	chr10	125226177	125226178	rs705145	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	10q26.13	GPR26	rs705145-C	0.638	1E-21		0.051	[0.041-0.062] unit decrease	Illumina [7428049] (imputed)	N
1540	chr10	125233180	125233181	rs705160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.13		rs705160-T	NR	1E-13		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1540	chr10	125234491	125234492	rs7090367	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q26.13	GPR26, BUB3	rs7090367-C	0.32	3E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1540	chr10	125243653	125243654	rs7070259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	10q26.13		rs7070259-G	0.357415	4E-8		0.0154915	[0.01-0.021] unit decrease	Illumina [13479924] (imputed)	N
1540	chr10	125243653	125243654	rs7070259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	10q26.13		rs7070259-G	0.357554	5E-11		0.0218079	[0.015-0.028] unit decrease	Illumina [13479178] (imputed)	N
1540	chr10	125247461	125247462	rs1557614	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	10q26.13	Intergenic	rs1557614-?		9E-6		1.292992	[NR]	Affymetrix [492217] (imputed)	N
1540	chr10	125251674	125251675	rs705162	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q26.13	intergenic	rs705162-A	0.26	3E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1540	chr10	125251750	125251751	rs1568079	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	10q26.13	BUB3, GPR26	rs1568079-A	0.355	2E-12	(Japanese)	0.025	[0.017-0.033] unit decrease	Illumina [6108953] (imputed)	N
1540	chr10	125252315	125252316	rs860912	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q26.13	intergenic	rs860912-A	0.182435705207116	8E-6	(G_Subdoligranulum_HB)	0.352176	[0.2-0.51] unit increase	Illumina [7711310] (imputed)	N
1541	chr10	125369600	125369601	rs114031744	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	10q26.13	intergenic	rs114031744-?	NR	1E-6		0.229	[0.12-0.34] unit decrease	Illumina [at least 13000000] (imputed)	N
1541	chr10	125380507	125380508	rs2486037	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	10q26.13	intergenic	rs2486037-?	NR	5E-6				Affymetrix, Illumina [4802696] (imputed)	N
1541	chr10	125418286	125418287	rs61861298	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	10q26.13	NR	rs61861298-C	0.233	4E-8		0.00857442	[0.0055-0.0116] unit decrease	NR [~ 9732723] (imputed)	N
1541	chr10	125426626	125426627	rs3808964	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.13	GPR26	rs3808964-T	0.6326	1E-8		1.0202013		Affymetrix [11880941] (imputed)	N
1541	chr10	125426626	125426627	rs3808964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q26.13	Intergenic	rs3808964-T	0.6305	4E-10	(MTAG)	0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1541	chr10	125426626	125426627	rs3808964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q26.13	Intergenic	rs3808964-G	0.3695	1E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1541	chr10	125429548	125429549	rs35608616	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q26.13	NR	rs35608616-A	NR	7E-10		6.159	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1542	chr10	125451207	125451208	rs7084727	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q26.13	NR	rs7084727-?	NR	6E-8		5.429	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1542	chr10	125515828	125515829	rs1896376	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	10q26.13	CPMX2	rs1896376-C	0.95	6E-6		1.83		Illumina [~ 6300000] (imputed)	N
1542	chr10	125517079	125517080	rs4246949	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	10q26.13	CPXM2	rs4246949-?	0.77	7E-6	(Southern European)	1.22	[1.05-1.41]	Illumina [546271]	N
1543	chr10	125650369	125650370	rs28445838	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.13	CPXM2	rs28445838-A	0.6075	3E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix [18391927] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	10q26.13	CPXM2	rs9423279-G	0.657	8E-9		0.0139	[0.0092-0.0186] unit decrease	Illumina [~ 250000] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	10q26.13	CHST15	rs9423279-C	0.3433	1E-11		0.015488954	[0.011-0.02] unit increase	Affymetrix [11514654] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q26.13	NR	rs9423279-G	0.645	2E-17		0.0102363	[0.0079-0.0126] unit decrease	NR [9732723] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	10q26.13	NR	rs9423279-G	0.645	3E-12		0.018580785	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	10q26.13	NR	rs9423279-G	0.637	2E-10		0.0101094	[0.007-0.0132] unit increase	NR [9732723] (imputed)	N
1543	chr10	125680418	125680419	rs9423279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	10q26.13		rs9423279-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1543	chr10	125683841	125683842	rs1949434	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q26.13		rs1949434-C	0.271	3E-11		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1544	chr10	125727174	125727175	rs7074389	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.13	NR	rs7074389-?		5E-6				Illumina [4322238] (imputed)	N
1544	chr10	125755075	125755076	rs574316709	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	10q26.13	NR	rs574316709-?	NR	7E-7		0.022702	[0.014-0.032] unit increase	Affymetrix [805426] (imputed)	N
1544	chr10	125772236	125772237	rs28360899	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	10q26.13	CHST15, CPXM2	rs28360899-A	NR	3E-8	(daytime resting, weekdays)	1.355	[0.87-1.84] unit decrease	Affymetrix [7141204] (imputed)	N
1545	chr10	125929798	125929799	rs7897969	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	10q26.13	intergenic	rs7897969-?	NR	5E-7	(Puberty)	0.749	[0.496-1.001] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1546	chr10	125972753	125972754	rs10794181	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q26.13	CHST15	rs10794181-G	0.60046875	8E-6	(CHST15, 14097_86_3)	0.1091889	[0.061-0.157] unit increase	Illumina [> 1000000] (imputed)	N
1546	chr10	125972753	125972754	rs10794181	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q26.13	CHST15	rs10794181-G	0.60046875	1E-6	(CHST15, 4469_78_2)	0.118837	[0.071-0.167] unit increase	Illumina [> 1000000] (imputed)	N
1546	chr10	125986897	125986898	rs11818084	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	10q26.13	intergenic	rs11818084-?	NR	8E-6	(AUC)			NR [2092490]	N
1547	chr10	126144178	126144179	rs2459210	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	10q26.13	LHPP	rs2459210-T	0.34	9E-6	(PS levels)	4.35	[2.43-6.27] iu/ml increase	Illumina [472123]	N
1547	chr10	126144838	126144839	rs908366	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	10q26.13	LHPP	rs908366-A	0.328	7E-6	(Allelic model)	2.199	[1.564-3.092]	Illumina [733202]	N
1547	chr10	126148481	126148482	rs145811080	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	10q26.13	NKX1-2, LHPP	rs145811080-G	NR	9E-7		0.167	[0.1-0.23] unit decrease	Illumina [27700000] (imputed)	N
1547	chr10	126157445	126157448	rs201982221	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	10q26.13		rs201982221-?	NR	5E-8		1.7449		Illumina [up to 7574753] (imputed)	N
1547	chr10	126158357	126158358	rs11245064	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q26.13	LHPP	rs11245064-A	0.826822	9E-11	(dihydroorotate)	0.196	[0.14-0.25] unit increase	Illumina [13039987] (imputed)	N
1547	chr10	126184987	126184988	rs12569498	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	10q26.13	LHPP	rs12569498-T	NR	4E-6	(adjusted for clinical variables)			Illumina [up to 3923932] (imputed)	N
1547	chr10	126185674	126185675	rs74160914	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	10q26.13	NR	rs74160914-C	0.057	4E-7	(Unifrac metric)	4.9419813	NR z-score increase	Illumina [5293637] (imputed)	N
1548	chr10	126225810	126225811	rs78514374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs78514374-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1548	chr10	126234632	126234633	rs12221386	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.13	FAM53B	rs12221386-?	NR	4E-7	(serine)	0.52170086	[0.32-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1548	chr10	126235389	126235390	rs34997829	27531626	Polimanti R	2016-08-17	Neuropsychopharmacology	The Interplay Between Risky Sexual Behaviors and Alcohol Dependence: Genome-Wide Association and Neuroimaging Support for LHPP as a Risk Gene.	Risky sexual behaviors (alcohol dependence interaction)	1,541 African American alcohol dependent cases, 1,436 European American alcohol dependent cases, 632 African American non-alcohol dependent controls, 315 European American non-alcohol dependent controls	NA	10q26.13	LHPP	rs34997829-?	0.732	3E-8				Illumina [at least 988306] (imputed)	N
1548	chr10	126236308	126236309	rs572890238	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	10q26.13		rs572890238-C	0.985339	2E-6		0.0553965	[0.033-0.078] unit decrease	Illumina [13900000] (imputed)	N
1548	chr10	126237576	126237577	rs12251637	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease in type 2 diabetes	3,094 European ancestry cases, 2,906 European ancestry controls	5,406 European ancestry cases, 8,744 European ancestry controls, 2,964 Asian cases, 3,323 Asian controls, 207 Chinese ancestry cases, 273 Chinese ancestry controls, 58 Indian ancestry cases, 107 Indian ancestry controls, 103 Malay ancestry cases, 56 Malay ancestry controls controls	10q26.13	NR	rs12251637-?		8E-6	(EA)	1.5	[1.16-1.94]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1548	chr10	126244969	126244970	rs35936514	29495898	Peterson RE	2018-03-02	Am J Psychiatry	Molecular Genetic Analysis Subdivided by Adversity Exposure Suggests Etiologic Heterogeneity in Major Depression.	Major depressive disorder	4,785 Han Chinese ancestry cases, 4,814 Han Chinese ancestry controls	NA	10q26.13	NR	rs35936514-T	0.26	2E-6		4.78	z score decrease	NR [4313801] (imputed)	N
1548	chr10	126250068	126250069	rs7908284	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.13	NR	rs7908284-?	NR	4E-7				Affymetrix [NR]	N
1548	chr10	126264995	126264996	rs11245301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.13	NR	rs11245301-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1548	chr10	126267736	126267737	rs74160941	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	10q26.13	LHPP	rs74160941-T	0.0211	5E-6		2.594	[1.72-3.913]	Affymetrix, Illumina [14074516] (imputed)	N
1548	chr10	126274611	126274612	rs61408740	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	10q26.13	LHPP	rs61408740-G	0.02	2E-8		1.65	1.38-1.96	Illumina [9210350] (imputed)	N
1548	chr10	126275913	126275914	rs12773846	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	10q26.13	LHPP	rs12773846-G	0.70	7E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1548	chr10	126284414	126284415	rs61870251	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	10q26.13	LHPP	rs61870251-A	NR	2E-10		0.865455	[0.82-0.91]	Illumina [11610548] (imputed)	N
1548	chr10	126286227	126286228	rs1563278	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q26.13	LHPP	rs1563278-?	NR	7E-12		0.020354392	[0.015-0.026] unit decrease	Illumina [27896057] (imputed)	N
1548	chr10	126289931	126289932	rs942015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.13		rs942015-T	NR	3E-29		0.0147	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1548	chr10	126292654	126292655	rs12779301	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	10q26.13	LHPP	rs12779301-C	0.66	6E-13		1.22	[1.15-1.29]	Affymetrix, Illumina [~ 6118121] (imputed)	N
1548	chr10	126293308	126293309	rs35837782	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	10q26.13	LHPP	rs35837782-?	NR	9E-11		1.26	[1.18-1.35]	Illumina [6755715] (imputed)	N
1548	chr10	126293308	126293309	rs35837782	27694927	Vijayakrishnan J	2016-10-03	Leukemia	A genome-wide association study identifies risk loci for childhood acute lymphoblastic leukemia at 10q26.13 and 12q23.1.	Acute lymphoblastic leukemia in childhood (B cell precursor)	1,658 European ancestry child cases, 7,224 European ancestry controls	1,109 child cases, 1,412 European ancestry child cases, 2,085 controls, 1,479 European ancestry controls	10q26.13	LHPP	rs35837782-G	0.62	1E-11		1.21	[1.15-1.28]	Illumina [11700000] (imputed)	N
1548	chr10	126294166	126294167	rs3740540	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	10q26.13	LHPP	rs3740540-C	NR	6E-6		1.16	[NR]	Affymetrix [757935]	N
1548	chr10	126294166	126294167	rs3740540	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	LHPP	rs3740540-A	0.287	5E-6	(Sitting height )	0.03	[NR] cm increase	Illumina [899892]	N
1548	chr10	126302935	126302936	rs7095944	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	10q26.13	LHPP	rs7095944-?		8E-6	(AA)	0.181	[0.091-0.271] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr10	126313385	126313386	rs2061071	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs2061071-?	NR	1E-8	(left isthmus cingulate)			NR [9227495] (imputed)	N
1548	chr10	126320901	126320902	rs897300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	10q26.13		rs897300-T	NR	3E-17		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1548	chr10	126323655	126323661	rs140795444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q26.13		rs140795444-T	NR	1E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1548	chr10	126326605	126326606	rs3824804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	10q26.13		rs3824804-C	NR	1E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1548	chr10	126326605	126326606	rs3824804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	10q26.13	RP11-12J10.3, FAM53B	rs3824804-T	NR	5E-8		0.0169322	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1548	chr10	126328688	126328689	rs3781466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs3781466-G	0.695375	1E-14		0.018546343	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1548	chr10	126328688	126328689	rs3781466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q26.13		rs3781466-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1548	chr10	126336157	126336158	rs2362515	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10q26.13	NR	rs2362515-?	NR	2E-6		0.0461	[0.027-0.065] unit increase	Illumina [at least 560000] (imputed)	N
1548	chr10	126337059	126337060	rs897306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	10q26.13		rs897306-?	NR	2E-63				NR [~ 8900000] (imputed)	N
1548	chr10	126338092	126338093	rs7075794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs7075794-T	0.601247	5E-20				Affymetrix, Illumina [19905671] (imputed)	N
1548	chr10	126343930	126343931	rs3781458	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	10q26.13		rs3781458-T	0.38	3E-13		0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1548	chr10	126343930	126343931	rs3781458	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q26.13	NR	rs3781458-T	NR	1E-20		0.06	NR unit decrease	NR [NR] (imputed)	N
1548	chr10	126343930	126343931	rs3781458	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	10q26.13	FAM53B	rs3781458-?	NR	1E-12		1.1778563	[1.12-1.23]	Illumina [13436641] (imputed)	N
1548	chr10	126346602	126346603	rs1006368	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q26.13		rs1006368-T	0.12242	4E-24		0.4144	[0.33-0.49] unit increase	Illumina [18030777] (imputed)	N
1548	chr10	126346602	126346603	rs1006368	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q26.13		rs1006368-T	0.12242	5E-22		0.389	[0.31-0.47] unit increase	Illumina [18030777] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs3781454-A	0.681247	2E-25		0.024730809	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs3781454-A	0.68125	7E-24		0.023981167	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs3781454-A	0.649431	7E-39				Affymetrix, Illumina [24649327] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	10q26.13	NR	rs3781454-A	0.676766	4E-36		0.025211	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs3781454-A	0.65746	7E-30				Affymetrix, Illumina [23114412] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q26.13	NR	rs3781454-A	0.677892	6E-31		0.024234	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1548	chr10	126348564	126348565	rs3781454	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	10q26.13	FAM53B, RP11-12J10.3	rs3781454-A	0.6785	5E-9		0.02252922	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1548	chr10	126351016	126351017	rs139984976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q26.13		rs139984976-C	NR	4E-8		0.0193	[0.012-0.026] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1549	chr10	126354553	126354554	rs10901802	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q26.13	RP11-12J10.3	rs10901802-G	0.479925	2E-8		0.0107953	[0.007-0.0145] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs3781452-T	0.63276	1E-10		0.014878198	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs3781452-T	0.632764	1E-20		0.021536054	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	10q26.13	NR	rs3781452-T	0.632095	1E-20		0.019847	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	10q26.13	NR	rs3781452-C	0.367331	5E-89		0.0642223	[0.058-0.071] unit increase	NR [19129689] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	10q26.13	METTL10, FAM53B	rs3781452-C	NR	3E-17		0.123175	[0.095-0.152] unit decrease	Affymetrix [27512692] (imputed)	N
1549	chr10	126355128	126355129	rs3781452	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		10q26.13	FAM53B, FAM175B, LHPP, METTL10	rs3781452-T	NR	6E-21		0.0601451	NR unit decrease	NR [NR] (imputed)	N
1549	chr10	126358072	126358073	rs10794175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	10q26.13		rs10794175-T	NR	3E-17		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1549	chr10	126358072	126358073	rs10794175	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	10q26.13		rs10794175-G	0.584	2E-11				Affymetrix [10369434] (imputed)	N
1549	chr10	126358072	126358073	rs10794175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs10794175-T	0.415116	3E-20		0.020722672	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1549	chr10	126358072	126358073	rs10794175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	10q26.13	NR	rs10794175-T	0.416037	3E-26		0.021252	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1549	chr10	126358072	126358073	rs10794175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.13	NR	rs10794175-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1549	chr10	126368365	126368366	rs1998418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	10q26.13	FAM53B, RP11-12J10.3	rs1998418-T	0.819	8E-9		0.02710538	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1549	chr10	126373312	126373313	rs2885521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs2885521-T	0.110257	9E-16		0.02843687	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1549	chr10	126382352	126382353	rs11245331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs11245331-A	0.110172	2E-19		0.03187305	[0.025-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126383087	126383088	rs11245333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs11245333-A	0.424145	1E-24				Affymetrix, Illumina [23472807] (imputed)	N
1549	chr10	126383087	126383088	rs11245333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs11245333-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1549	chr10	126383362	126383363	rs4450131	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q26.13	RP11-12J10.3	rs4450131-T	0.474748	4E-9		0.01161	[0.0077-0.0155] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr10	126383362	126383363	rs4450131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	10q26.13	FAM53B, RP11-12J10.3	rs4450131-C	0.5249	5E-10		0.02199829	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1549	chr10	126393875	126393875	rs146131325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q26.13		rs146131325-GGAAGGC	NR	5E-17		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1549	chr10	126393875	126393875	rs146131325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q26.13		rs146131325-GGAAGGC	NR	1E-13		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1549	chr10	126399929	126399930	rs11245339	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q26.13	NR	rs11245339-A	0.3596	1E-6		0.0132	[0.0079-0.0185] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1549	chr10	126408875	126408875	rs36053385	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	10q26.13	FAM53B	rs36053385-CA	0.633	3E-10		0.345	[0.24-0.45] unit decrease	Affymetrix [NR] (imputed)	N
1549	chr10	126408875	126408875	rs36053385	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	10q26.13	FAM53B	rs36053385-CA	0.318	1E-13		0.0024	[0.0018-0.003] unit increase	Affymetrix [NR] (imputed)	N
1549	chr10	126413772	126413773	rs6597851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs6597851-A	0.311624	2E-15		0.019196391	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126417913	126417914	rs10901811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q26.13		rs10901811-A	NR	7E-14		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1549	chr10	126418781	126418782	rs11245344	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	10q26.13	METTL10	rs11245344-C	0.4673	3E-11		6.63	NR z score increase	Illumina [26237160] (imputed)	N
1549	chr10	126419152	126419153	rs7894089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	10q26.13	NR	rs7894089-T	0.839364	3E-15		0.020734	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1549	chr10	126419383	126419384	rs10901812	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q26.13	NR	rs10901812-A	0.27	9E-17		0.0171	[0.013-0.021] unit increase	NR [NR]	N
1549	chr10	126419742	126419743	rs12247543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	10q26.13		rs12247543-C	NR	2E-15		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1549	chr10	126419840	126419841	rs7080838	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	10q26.13		rs7080838-C	0.430358	5E-8		0.0195883	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1549	chr10	126424136	126424137	rs4962691	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs4962691-?	NR	1E-10	(right hippocampus)			NR [9227495] (imputed)	N
1549	chr10	126424136	126424137	rs4962691	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	10q26.13	FAM53B	rs4962691-T	0.571	5E-10		0.291	[0.11-0.47] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1549	chr10	126424822	126424823	rs4962692	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	NR	rs4962692-?		3E-14				NR [7428630] (imputed)	N
1549	chr10	126425536	126425537	rs11245346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	10q26.13	RP11-12J10.3, FAM53B	rs11245346-C	0.161856	3E-14		0.023259629	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126425536	126425537	rs11245346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs11245346-G	0.836629	3E-17				Affymetrix, Illumina [17210439] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q26.13	Intergenic	rs2629540-C	0.2434	3E-14	(MTAG)	0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q26.13	Intergenic	rs2629540-G	0.7566	1E-12		0.0161	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q26.13	Intergenic	rs2629540-C	0.2439	3E-16	(MTAG)	0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q26.13	Intergenic	rs2629540-G	0.7561	1E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q26.13	Intergenic	rs2629540-C	0.2501	2E-10	(MTAG)	0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q26.13	FAM53B	rs2629540-?	NR	4E-8	(Symptom count)			Illumina [37426733] (imputed)	N
1549	chr10	126426147	126426148	rs2629540	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	10q26.13	FAM53B	rs2629540-?	NR	1E-6	(Symptom count, AA)			Illumina [37426733] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.13	NR	rs11245347-G	0.4167	1E-17				NR [9056863] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	10q26.13	C2orf73	rs11245347-?		5E-20				NR [7428630] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	FIP1L1, CHIC2, AC110792.1	rs11245347-?		5E-50				NR [7428630] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	10q26.13	DAB1	rs11245347-?		3E-10				NR [7428630] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	10q26.13	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs11245347-?		9E-20				NR [7428630] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	LHPP, RP11-12J10.3, FAM53B, METTL10, FAM175B	rs11245347-?		4E-63				NR [7428630] (imputed)	N
1549	chr10	126427036	126427037	rs11245347	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs11245347-?	NR	3E-10	(left hippocampus)			NR [9227495] (imputed)	N
1549	chr10	126429874	126429875	rs10901813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.13		rs10901813-A	0.7492	5E-8	(conditional-joint)	0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1549	chr10	126431280	126431281	rs10901814	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.13		rs10901814-G	0.44	2E-175		28.24	z score increase	Affymetrix [9061022] (imputed)	N
1549	chr10	126431280	126431281	rs10901814	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.13		rs10901814-G	0.44	3E-68		17.45	z score increase	Affymetrix [9061022] (imputed)	N
1549	chr10	126431710	126431711	rs34884690	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	10q26.13		rs34884690-?	NR	7E-54				NR [9705931] (imputed)	N
1549	chr10	126436716	126436717	rs4962694	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	10q26.13	FAM53B, FAM175B, METTL10	rs4962694-G	NR	4E-12		1.36	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1549	chr10	126438018	126438019	rs10510138	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	FAM53B, METTL10	rs10510138-A	0.052	8E-6	(TSH )	0.02	[NR] uIU/mL increase	Illumina [899892]	N
1549	chr10	126439380	126439381	rs111456533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	10q26.13	METTL10, RP11-12J10.3	rs111456533-A	0.162148	7E-9		0.017741213	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1549	chr10	126439380	126439381	rs111456533	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	10q26.13	METTL10, FAM175B, RP11-12J10.3, FAM53B	rs111456533-?		1E-6				Illumina [9578670] (imputed)	N
1549	chr10	126439380	126439381	rs111456533	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	10q26.13	METTL10, FAM175B, RP11-12J10.3, FAM53B	rs111456533-G	0.829	1E-9		1.11	1.08-1.14	Illumina [9725440] (imputed)	N
1549	chr10	126439380	126439381	rs111456533	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	10q26.13	METTL10, FAM175B, RP11-12J10.3, FAM53B	rs111456533-?		3E-6				Illumina [9560910] (imputed)	N
1549	chr10	126446591	126446592	rs1055256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q26.13		rs1055256-G	NR	7E-24		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1549	chr10	126446591	126446592	rs1055256	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	10q26.13	EEF1AKMT2	rs1055256-A	0.4235	2E-20		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1549	chr10	126447089	126447090	rs10712394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	10q26.13		rs10712394-T	NR	8E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1549	chr10	126451384	126451385	rs7898003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	10q26.13		rs7898003-A	0.61255	2E-8		0.0165637	[0.011-0.022] unit increase	Illumina [13478778] (imputed)	N
1549	chr10	126456996	126456997	rs10430743	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	10q26.13	EEF1AKMT2	rs10430743-T	0.4282	5E-19		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1549	chr10	126461367	126461368	rs2363340	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	10q26.13	LHPP, FAM53B, METTL10, FAM175B	rs2363340-C	NR	3E-14		9.45	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr10	126464114	126464115	rs141185973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10q26.13	NR	rs141185973-?	NR	3E-6		0.0689	[0.04-0.098] unit increase	Illumina [at least 560000] (imputed)	N
1549	chr10	126473308	126473309	rs2947343	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs2947343-?	NR	5E-8	(right hippocampus)			NR [9227495] (imputed)	N
1549	chr10	126474199	126474200	rs12218858	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	10q26.13	FAM175B, FAM53B, METTL10	rs12218858-C	NR	1E-15		43.75	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr10	126474199	126474200	rs12218858	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA4 volume	21,297 European ancestry individuals	NA	10q26.13	FAM53B, METTL10, FAM175B	rs12218858-C	NR	6E-15		3.87	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr10	126474199	126474200	rs12218858	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume	21,297 European ancestry individuals	NA	10q26.13	FAM53B, METTL10, FAM175B	rs12218858-C	NR	9E-15		4.45	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1549	chr10	126477208	126477209	rs4962699	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	10q26.13	EEF1AKMT2	rs4962699-A	0.2503	2E-8		0.0201	[0.013-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1549	chr10	126477208	126477209	rs4962699	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	10q26.13	EEF1AKMT2	rs4962699-A	0.2642	6E-7		0.021507	[0.013-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1549	chr10	126480555	126480556	rs10901821	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q26.13	METTL10	rs10901821-?	NR	9E-17		0.02971885	[0.023-0.037] unit increase	Illumina [27896057] (imputed)	N
1549	chr10	126482848	126482849	rs11245366	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	10q26.13	NR	rs11245366-G	0.38	3E-7	(lumbar spine)	0.29	[0.17-0.41] g increase	Illumina [> 1100000]	N
1549	chr10	126483094	126483094	rs35313529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	10q26.13	METTL10, RP11-12J10.3	rs35313529-AC	0.78497	5E-10		0.016731786	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1550	chr10	126484554	126484555	rs61872090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.13		rs61872090-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1550	chr10	126484554	126484555	rs61872090	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.13		rs61872090-?	NR	4E-9		0.011752	[0.0076-0.016] unit decrease	Affymetrix [20259828] (imputed)	N
1550	chr10	126486442	126486443	rs12764880	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.13		rs12764880-T	0.45	8E-61		16.45	z score increase	Affymetrix [9061022] (imputed)	N
1550	chr10	126486442	126486443	rs12764880	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.13	NR	rs12764880-T	0.4308	1E-17				NR [9056863] (imputed)	N
1550	chr10	126486442	126486443	rs12764880	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q26.13	NR	rs12764880-T	0.4328	3E-7	(Isthmus Cingulate)	0.004423042	[0.0027-0.0061] unit increase	Affymetrix, Illumina [NR]	N
1550	chr10	126486442	126486443	rs12764880	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	10q26.13	NR	rs12764880-T	0.4327	6E-9	(Posterior Cingulate)	4.302263	[2.85-5.75] unit decrease	Affymetrix, Illumina [NR]	N
1550	chr10	126488659	126488660	rs10901823	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	NR	rs10901823-?		7E-14				NR [7428630] (imputed)	N
1550	chr10	126498851	126498852	rs10901825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	10q26.13	NR	rs10901825-T	0.759033	2E-10		0.013692	[0.0095-0.0179] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1550	chr10	126510088	126510089	rs7915429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs7915429-C	0.769405	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
1550	chr10	126510088	126510089	rs7915429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	10q26.13	NR	rs7915429-C	0.76053	3E-12		0.015116	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1550	chr10	126517988	126517989	rs2303611	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	10q26.13	ABRAXAS2	rs2303611-G	0.38	8E-7	(lumbar spine)	0.28	[0.16-0.4] g increase	Illumina [> 1100000]	N
1550	chr10	126529836	126529836	rs537932984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	10q26.13	FAM175B	rs537932984-CA	NR	1E-8		0.020942	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1550	chr10	126534414	126534415	rs2629529	30367910	Levin AM	2018-10-24	J Allergy Clin Immunol	Integrative approach identifies corticosteroid response variant in diverse populations with asthma.	Asthma control x inhaled corticosteroid treatment interaction (2df)	244 African American individuals	up to 1,366 African American individuals, up to 1,461 Latino ancestry individuals, up to 98 European ancestry individuals	10q26.13	intergenic	rs2629529-C	0.06	6E-6	(AA)			Affymetrix [574370]	N
1550	chr10	126537824	126537825	rs11245387	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	10q26.13	FAM175B	rs11245387-T	0.4	3E-7	(BDRPRED, AA)	1.76	[1.09-2.43] unit decrease	Illumina [NR] (imputed)	N
1550	chr10	126539127	126539128	rs11245388	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.13	FAM175B	rs11245388-T	0.428331	1E-10		0.0120014	[0.0083-0.0157] unit decrease	NR [13737936] (imputed)	N
1550	chr10	126543992	126543993	rs2086945	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.13	NR	rs2086945-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1550	chr10	126546907	126546907	rs111887938	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs111887938-?	NR	2E-8	(right hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126546907	126546907	rs111887938	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs111887938-?	NR	2E-8	(left hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126551227	126551228	rs60499622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	10q26.13		rs60499622-T	0.10779	4E-8		0.2272	[0.15-0.31] unit increase	Illumina [18030777] (imputed)	N
1550	chr10	126551899	126551900	rs2559509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q26.13		rs2559509-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1550	chr10	126552235	126552236	rs28411166	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA1 volume	21,297 European ancestry individuals	NA	10q26.13	FAM53B, METTL10, FAM175B	rs28411166-T	NR	1E-9		8.44	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1550	chr10	126552235	126552236	rs28411166	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume	21,297 European ancestry individuals	NA	10q26.13	FAM53B, METTL10, FAM175B	rs28411166-T	NR	2E-10		7.32	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1550	chr10	126552394	126552395	rs2629542	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs2629542-?	NR	7E-11	(left hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126552394	126552395	rs2629542	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs2629542-?	NR	3E-12	(right hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126552394	126552395	rs2629542	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA3 volume	21,297 European ancestry individuals	NA	10q26.13	FAM53B, METTL10, FAM175B	rs2629542-G	NR	3E-12		4.06	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1550	chr10	126554667	126554668	rs12359711	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs12359711-?	NR	3E-12	(right hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126554667	126554668	rs12359711	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs12359711-?	NR	2E-11	(left hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126559506	126559506	rs139314951	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	10q26.13	NR	rs139314951-?	NR	1E-8	(right hippocampus)			NR [9227495] (imputed)	N
1550	chr10	126569228	126569229	rs28634972	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		10q26.13	intergenic	rs28634972-G	0.250401	3E-8		0.513245	[0.34-0.69] unit decrease	Illumina [640625] (imputed)	N
1550	chr10	126581983	126581984	rs1896529	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.13	RP11-298J20.4	rs1896529-A	0.0636	1E-6		0.0686	[0.041-0.096] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1550	chr10	126583587	126583588	rs61872120	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	10q26.13	FAM175B, ZRANB1	rs61872120-?	NR	2E-21		0.03263687	[0.026-0.039] unit increase	Illumina [27896057] (imputed)	N
1550	chr10	126587487	126587488	rs72828935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.13		rs72828935-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1550	chr10	126592152	126592153	rs55674450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs55674450-T	0.158934	5E-10				Affymetrix, Illumina [19872809] (imputed)	N
1550	chr10	126592521	126592522	rs7081640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	10q26.13		rs7081640-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1550	chr10	126594077	126594078	rs17636031	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q26.13	NA	rs17636031-T	0.7244	4E-17		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1550	chr10	126599885	126599886	rs7914110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q26.13		rs7914110-G	0.246946	3E-18		0.0203889	[0.016-0.025] unit increase	Illumina [13479295] (imputed)	N
1550	chr10	126605315	126605316	rs12761149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q26.13		rs12761149-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1550	chr10	126610908	126610909	rs116924819	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	10q26.13	FAM175B, ZRANB1	rs116924819-?	NR	4E-8		0.02663	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1550	chr10	126612510	126612510	rs11424084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.13	AL731577.2	rs11424084-CA	0.1403	7E-17		0.0228	[0.018-0.028] unit increase	Affymetrix [18391927] (imputed)	N
1551	chr10	126616819	126616820	rs75011412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.13	NR	rs75011412-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1551	chr10	126629607	126629608	rs72828952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.13		rs72828952-G	NR	2E-16		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1551	chr10	126629607	126629608	rs72828952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.13		rs72828952-G	NR	1E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1551	chr10	126649006	126649007	rs17152408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs17152408-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1551	chr10	126649515	126649516	rs17152411	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	10q26.13	ZRANB1	rs17152411-A	0.75	2E-7		0.019	[0.0053-0.0327] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1551	chr10	126649948	126649949	rs76972397	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	10q26.13	ZRANB1	rs76972397-T	0.93	1E-6	(Female)	0.432	[0.31-0.56]	NR [up to 1668434] (imputed)	N
1551	chr10	126658074	126658075	rs11245450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.13	NR	rs11245450-A	0.468128	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1551	chr10	126658074	126658075	rs11245450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	10q26.13	NR	rs11245450-A	0.422672	4E-13		0.013763	[0.01-0.017] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1551	chr10	126658074	126658075	rs11245450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.13		rs11245450-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1551	chr10	126658074	126658075	rs11245450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	10q26.13		rs11245450-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1551	chr10	126664165	126664166	rs7096822	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	10q26.13	ZRANB1	rs7096822-T	0.7537	1E-8		0.0045	[0.0029-0.0061] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1551	chr10	126677239	126677244	rs75066758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q26.13	CTBP2	rs75066758-G	0.413691	1E-9		0.014053411	[0.0095-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1551	chr10	126677239	126677244	rs75066758	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	10q26.13	CTBP2	rs75066758-G		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1551	chr10	126683765	126683766	rs11245453	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.13	NR	rs11245453-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1551	chr10	126684795	126684796	rs1061072	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	10q26.13	CTBP2	rs1061072-G	0.892937	2E-8		0.0126772	[0.0082-0.0171] unit increase	Affymetrix [12370749]	N
1551	chr10	126685866	126685867	rs4962716	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	10q26.13	NR	rs4962716-T	0.1258	2E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1551	chr10	126685915	126685916	rs12414708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	10q26.13		rs12414708-A	NR	1E-10		0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1551	chr10	126685915	126685916	rs12414708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q26.13		rs12414708-A	NR	1E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1551	chr10	126690918	126690919	rs3781442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q26.13		rs3781442-A	NR	3E-11		0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1551	chr10	126695672	126695673	rs1561589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q26.13	NA	rs1561589-A	0.3622	1E-15		0.0136	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1551	chr10	126695672	126695673	rs1561589	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	10q26.13	NR	rs1561589-G	NR	7E-10		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1551	chr10	126696495	126696496	rs1970811	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	10q26.13	CTBP2	rs1970811-T	0.542259	2E-9		0.0115949	[0.0078-0.0154] unit increase	Affymetrix [NR] (imputed)	N
1551	chr10	126696871	126696872	rs4962416	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	10q26.13	NR	rs4962416-C	0.27	2E-11		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1551	chr10	126696871	126696872	rs4962416	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	10q26.13	CTBP2	rs4962416-C	0.27	2E-7		1.17	[1.05-1.30]	Illumina [527869]	N
1551	chr10	126697209	126697210	rs7077275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	10q26.13		rs7077275-C	NR	2E-8		0.0821	[0.053-0.111] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1551	chr10	126697493	126697494	rs12769682	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	10q26.13	NR	rs12769682-C	0.288620584	4E-6		1.0890925	[1.05-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
1551	chr10	126697493	126697494	rs12769682	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	10q26.13	NR	rs12769682-C	NR	5E-13		1.059	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1551	chr10	126697819	126697820	rs10732902	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	10q26.13	NR	rs10732902-T	0.9	6E-6	(AA)	0.15	[0.085-0.215] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1551	chr10	126703348	126703349	rs3781426	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	10q26.13	CTBP2	rs3781426-T	0.31	9E-8		0.019	[0.0053-0.0327] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1551	chr10	126710653	126710654	rs4109292	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	10q26.13	CTBP2	rs4109292-G	NR	8E-9		0.00726326	[0.0048-0.0097] unit decrease	Affymetrix [10061374] (imputed)	N
1551	chr10	126710790	126710791	rs9664044	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	10q26.13	NR	rs9664044-T	0.227	5E-7	(Unifrac metric)	4.894644	NR z-score increase	Illumina [5293637] (imputed)	N
1551	chr10	126710790	126710791	rs9664044	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.13	CTBP2	rs9664044-C	0.7681	2E-9		1.0271623		Affymetrix [11880941] (imputed)	N
1551	chr10	126710790	126710791	rs9664044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	10q26.13		rs9664044-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1551	chr10	126712780	126712781	rs4411245	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q26.13	CTBP2	rs4411245-A	0.2934	6E-10		0.1023	[0.07-0.135] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1551	chr10	126714713	126714714	rs2946994	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	10q26.13		rs2946994-?	NR	1E-5		0.926523	[0.89-0.96]	NR [680312]	N
1551	chr10	126714713	126714714	rs2946994	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	10q26.13	CTBP2	rs2946994-G	0.508	2E-8	(women)	0.0137	[0.009-0.0184] unit increase	Illumina [246328]	N
1551	chr10	126715435	126715436	rs3781411	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	10q26.13	CTBP2	rs3781411-C	0.88	3E-10		1.06		Affymetrix [11800000] (imputed)	N
1551	chr10	126715628	126715629	rs3781409	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	10q26.13		rs3781409-C	0.914426	7E-7		0.0167234	[0.01-0.023] unit decrease	Illumina [13900000] (imputed)	N
1551	chr10	126716345	126716346	rs2938006	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	10q26.13		rs2938006-C	NR	6E-8		1.0815	NR	Affymetrix [7846216] (imputed)	N
1551	chr10	126719575	126719576	rs2919286	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10q26.13	NA	rs2919286-T		1E-8		0.0103977	[0.0068-0.014] unit decrease	Illumina [13288253] (imputed)	N
1551	chr10	126730213	126730214	rs4962424	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.13	NR	rs4962424-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1551	chr10	126733320	126733321	rs4962725	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q26.13	CTBP2	rs4962725-T	0.571866	7E-13		0.00996697	[0.0072-0.0127] unit decrease	Affymetrix [12370749]	N
1551	chr10	126733545	126733546	rs11245482	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q26.13	NR	rs11245482-?		3E-9		0.0132329	[0.0089-0.0176] unit decrease	Affymetrix [19400418] (imputed)	N
1551	chr10	126733545	126733546	rs11245482	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	10q26.13	CTBP2	rs11245482-T	0.614569	3E-8		0.0112421	[0.0073-0.0152] unit increase	Affymetrix [NR] (imputed)	N
1551	chr10	126737578	126737579	rs3012065	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	10q26.13	CTBP2	rs3012065-?	0.3216	4E-8		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
1551	chr10	126738532	126738533	rs2919290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q26.13		rs2919290-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1551	chr10	126739337	126739338	rs718948	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q26.13	CTBP2	rs718948-C	0.342	2E-6	(EA)	0.016	[0.0097-0.0231] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1551	chr10	126739337	126739338	rs718948	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q26.13	CTBP2	rs718948-C	0.338	1E-6		0.016	[0.0096-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1551	chr10	126740833	126740834	rs115805226	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	10q26.13		rs115805226-A	0.898639	9E-6		0.0212932	[0.012-0.03] unit increase	Illumina [13900000] (imputed)	N
1552	chr10	126761836	126761837	rs4021186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q26.13		rs4021186-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1552	chr10	126763439	126763440	rs146259657	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	10q26.13		rs146259657-T	0.988027	2E-6		0.0582509	[0.034-0.082] unit decrease	Illumina [13900000] (imputed)	N
1552	chr10	126807284	126807285	rs1152698	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	10q26.13	CTBP2	rs1152698-?		8E-17				Affymetrix, Illumina [NR] (imputed)	N
1552	chr10	126808876	126808877	rs1254702	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	10q26.13	NR	rs1254702-?	NR	8E-6		0.124145	[0.07-0.179] unit increase	NR [13958389] (imputed)	N
1552	chr10	126808876	126808877	rs1254702	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	10q26.13	NR	rs1254702-C		2E-9		0.09	[0.07-0.11] unit increase	NR [NR]	N
1552	chr10	126812269	126812270	rs10901863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	10q26.13		rs10901863-T	NR	1E-11		0.0862	[0.061-0.111] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
1552	chr10	126812269	126812270	rs10901863	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	10q26.13	CTBP2	rs10901863-T	26.66	2E-26	(additive)	1.06	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1552	chr10	126812269	126812270	rs10901863	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	10q26.13		rs10901863-?	NR	7E-17		8.348577	z score increase	Affymetrix [NR] (imputed)	N
1552	chr10	126823965	126823966	rs10901868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.13		rs10901868-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1552	chr10	126828083	126828084	rs7090538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.13	CTBP2	rs7090538-C	NR	5E-9		0.017064	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1552	chr10	126842553	126842554	rs12354622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.13		rs12354622-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1552	chr10	126843300	126843301	rs35106605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.13		rs35106605-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1552	chr10	126844620	126844621	rs10901870	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	SLC12A8	rs10901870-?		1E-8				NR [7428630] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.13		rs1915146-G	0.41	5E-20		9.17	z score increase	Affymetrix [9061022] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.13		rs1915146-G	0.41	3E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.13		rs1915146-G	0.41	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.13	NR	rs1915146-G	0.4165	2E-10				NR [9056863] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.13	NR	rs1915146-G	0.4165	1E-17				NR [9056863] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	SRD5A3, TMEM165, CLOCK, PDCL2, NMU	rs1915146-?		1E-9				NR [7428630] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	10q26.13	CTBP2	rs1915146-?		1E-15				NR [7428630] (imputed)	N
1552	chr10	126846213	126846214	rs1915146	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	10q26.13	CTBP2	rs1915146-G	0.4	4E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1552	chr10	126850488	126850489	rs57592469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q26.13	Intergenic	rs57592469-A	0.5753	9E-10	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1552	chr10	126850488	126850489	rs57592469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	10q26.13	Intergenic	rs57592469-A	0.5753	3E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1552	chr10	126861277	126861278	rs9422857	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	10q26.13	CTBP2	rs9422857-?	NR	3E-8		4.19937E-4	[-0.00437-0.00521] unit decrease	Affymetrix [25921788] (imputed)	N
1552	chr10	126861277	126861278	rs9422857	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	10q26.13	CTBP2	rs9422857-?	NR	3E-8		0.0134319	[0.0087-0.0182] unit increase	Affymetrix [25921788] (imputed)	N
1552	chr10	126862255	126862256	rs9423024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q26.13		rs9423024-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1552	chr10	126863720	126863721	rs11245533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	10q26.13	MRPS21P6	rs11245533-T	NR	3E-8		0.019858	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1553	chr10	126889717	126889718	rs11245539	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	10q26.13	NR	rs11245539-A	0.2614	8E-6		0.0144	[0.0081-0.0207] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1553	chr10	126896674	126896675	rs55914228	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference (90 days post influenza vaccination)	298 individuals	NA	10q26.13	NR	rs55914228-?	NR	3E-8			[NR]	NR [1665663]	N
1553	chr10	126901056	126901057	rs61869228	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	10q26.13	CTBP2, TEX36-AS1	rs61869228-T	0.09	8E-6		0.31	unit increase	Illumina [5600000] (imputed)	N
1553	chr10	126903512	126903513	rs78346957	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	10q26.13	NR	rs78346957-G		5E-6		0.4588	[0.26-0.66] SD units decrease	NR [10700000] (imputed)	N
1553	chr10	126903512	126903513	rs78346957	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	10q26.13	NR	rs78346957-G		7E-6		0.4491	[0.25-0.65] SD units decrease	NR [10700000] (imputed)	N
1553	chr10	126916122	126916123	rs9422860	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q26.13	NR	rs9422860-?	NR	1E-7	(Japanese)	0.6912	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1554	chr10	127037416	127037417	rs1459385	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Infant, child and juvenile death in continuous marriage (proportion of children died <15 years)	up to 532 Tibetan ancestry individuals	NA	10q26.13	CTBP2	rs1459385-T		2E-8		0.704	[NR] unit increase	Illumina [~ 3500000] (imputed)	N
1554	chr10	127065563	127065564	rs72834903	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	10q26.13	intergenic	rs72834903-A	NR	5E-6	(adjusted for clinical variables)			Illumina [up to 3791089] (imputed)	N
1554	chr10	127081225	127081226	rs4962295	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,534 Han Chinese ancestry women	964 European ancestry women	10q26.13	intergenic	rs4962295-?	NR	3E-6	(Additive, wrinkles under eyes)	0.22	unit decrease	Illumina [6328611] (imputed)	N
1554	chr10	127081225	127081226	rs4962295	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,534 Han Chinese ancestry women	964 European ancestry women	10q26.13	intergenic	rs4962295-?	0.06	2E-8	(Additive, wrinkles under eyes, East Asian)	0.26	NR unit decrease	Illumina [6328611] (imputed)	N
1554	chr10	127112828	127112829	rs78089757	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	10q26.13	RPS27P18	rs78089757-A	NR	4E-7	(Japanese)	1.406913	[1.23294984483326-1.6054224749514]	Illumina [at least 6195093] (imputed)	N
1554	chr10	127135837	127135838	rs989507	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.13	intergenic	rs989507-A	0.188	2E-6	(Urinary creatinine )	0.03	[NR] mmol/d increase	Illumina [899892]	N
1555	chr10	127169160	127169161	rs9422766	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.13	MMP21	rs9422766-?	NR	2E-6	(glycerol)	1.3436658	[0.79-1.9] unit increase	Affymetrix [at least 2500000] (imputed)	N
1555	chr10	127174083	127174084	rs10793999	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	10q26.13	Intergenic	rs10793999-G	NR	5E-6		0.0236387	[0.013-0.034] unit decrease	Illumina [13520550] (imputed)	N
1555	chr10	127174420	127174421	rs4962460	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.13	NR	rs4962460-G	0.4227	7E-15				NR [9056863] (imputed)	N
1555	chr10	127175201	127175202	rs4962461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q26.13	Intergenic	rs4962461-A	0.4722	2E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr10	127176890	127176891	rs11244517	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.13		rs11244517-A	0.48	2E-23		9.97	z score increase	Affymetrix [9061022] (imputed)	N
1555	chr10	127176890	127176891	rs11244517	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.13	NR	rs11244517-A	0.4823	1E-17				NR [9056863] (imputed)	N
1555	chr10	127176960	127176961	rs7897631	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.13		rs7897631-A	0.45	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
1555	chr10	127176960	127176961	rs7897631	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q26.13	TEX36, AS1	rs7897631-A	0.456021	2E-10		0.0132691	[0.0092-0.0173] unit decrease	NR [16516521] (imputed)	N
1555	chr10	127178314	127178315	rs10901385	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.13		rs10901385-T	0.47	4E-31		11.61	z score increase	Affymetrix [9061022] (imputed)	N
1555	chr10	127182958	127182959	rs17727474	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	10q26.13	NR	rs17727474-?		3E-9		0.017551	[0.012-0.023] unit increase	Affymetrix [19400418] (imputed)	N
1555	chr10	127190027	127190028	rs1545045	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10q26.13	NR	rs1545045-A	NR	2E-6	(LME model)	0.5362	[0.32-0.76] unit increase	NR [NR] (imputed)	N
1555	chr10	127251916	127251917	rs12256545	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	10q26.13	NR	rs12256545-?	NR	5E-6		0.0295	[0.017-0.042] unit increase	Illumina [~ 7800000] (imputed)	N
1556	chr10	127325281	127325282	rs59920340	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	10q26.13	NR	rs59920340-?	NR	7E-6		0.2843	[0.16-0.41] unit increase	Illumina [at least 560000] (imputed)	N
1557	chr10	127407938	127407939	rs45614045	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	10q26.2	FLJ37035, C10orf122, ALDOAP2	rs45614045-T	0.03	9E-7		0.78	[0.47-1.09] unit decrease	Illumina [8454933] (imputed)	N
1557	chr10	127469086	127469087	rs10901430	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	10q26.2	NR	rs10901430-G	0.791657	5E-8		0.0436941	[0.027-0.06] unit increase	Affymetrix [17914406] (imputed)	N
1557	chr10	127495831	127495832	rs2027515	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UROS	5,366 Icelandic ancestry individuals	NA	10q26.2		rs2027515-T	0.215	1E-47		0.328154	[0.28-0.37] unit increase	Illumina [7506463] (imputed)	N
1557	chr10	127495831	127495832	rs2027515	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q26.2	UROS	rs2027515-C	0.78546875	4E-27	(UROS, 11248_43_3)	0.32375023	[0.27-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
1557	chr10	127524611	127524612	rs4075326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.2	NR	rs4075326-T	0.451227	6E-19				Affymetrix, Illumina [24246363] (imputed)	N
1557	chr10	127528266	127528267	rs3781058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q26.2		rs3781058-C	NR	2E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1557	chr10	127528266	127528267	rs3781058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q26.2	NR	rs3781058-C	0.445109	3E-17		0.015977	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	10q26.2		rs11244669-C	NR	2E-12		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	10q26.2	DHX32, BCCIP	rs11244669-C	0.412159	3E-10		0.014081729	[0.0097-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q26.2	DHX32, BCCIP	rs11244669-C	0.412149	1E-13		0.0158808	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	10q26.2	DHX32, BCCIP	rs11244669-C	0.412159	9E-16		0.01804061	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.2	NR	rs11244669-C	0.353032	2E-18				Affymetrix, Illumina [20825802] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	10q26.2	NR	rs11244669-C	0.411207	2E-18		0.017229	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	10q26.2		rs11244669-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	10q26.2		rs11244669-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1557	chr10	127532781	127532782	rs11244669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q26.2		rs11244669-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1558	chr10	127561567	127561568	rs10794029	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	10q26.2	UROS	rs10794029-G	0.794	8E-14	(Uroporphyrinogen-III synthase, UROS.11248.43.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1558	chr10	127616323	127616324	rs11244703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	10q26.2	NR	rs11244703-G	0.635511	1E-10		0.012828	[0.0089-0.0167] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1558	chr10	127630670	127630671	rs2176101	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	10q26.2	NR	rs2176101-A		7E-6				Illumina [458525]	N
1559	chr10	127679231	127679232	rs7914095	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	10q26.2	FANK1	rs7914095-C	0.6813	4E-6				Affymetrix, Illumina [9900000] (imputed)	N
1559	chr10	127679231	127679232	rs7914095	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	10q26.2	FANK1	rs7914095-C	0.6813	3E-6		0.0291	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1559	chr10	127679231	127679232	rs7914095	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	10q26.2	FANK1	rs7914095-C	0.6813	2E-6		0.0294	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1559	chr10	127679231	127679232	rs7914095	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	10q26.2	FANK1	rs7914095-C	0.6813	1E-6		0.0297	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1559	chr10	127679231	127679232	rs7914095	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	10q26.2	FANK1	rs7914095-C	0.6813	2E-6		0.0294	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1559	chr10	127679402	127679403	rs7900129	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	10q26.2	DNAJC13, ACAD11, NPHP3, ACKR4, UBA5	rs7900129-?		5E-9				NR [7428630] (imputed)	N
1559	chr10	127687016	127687017	rs11244755	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM12	5,336 Icelandic ancestry individuals	NA	10q26.2		rs11244755-T	0.3068	1E-22		0.185712	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
1559	chr10	127687976	127687977	rs11244757	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.2		rs11244757-C	0.36	5E-15		7.82	z score increase	Affymetrix [9061022] (imputed)	N
1559	chr10	127699935	127699936	rs10901513	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	10q26.2	ADAM12, FANK1	rs10901513-T	0.60	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1559	chr10	127722617	127722618	rs1278247	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.2		rs1278247-T	0.35	5E-8		5.46	z score increase	Affymetrix [9061022] (imputed)	N
1559	chr10	127722617	127722618	rs1278247	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	10q26.2		rs1278247-T	0.35	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
1559	chr10	127725102	127725103	rs1278250	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.2	NR	rs1278250-A	0.3129	7E-12				NR [9056863] (imputed)	N
1559	chr10	127726580	127726580	rs142217642	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	10q26.2	NR	rs142217642-?	NR	9E-6		0.2498	[0.14-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
1559	chr10	127729733	127729734	rs10794057	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	10q26.2	ADAM12	rs10794057-T	0.3984375	1E-16	(ADAM12, 4420_7_2)	0.20892917	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1559	chr10	127730297	127730298	rs35214304	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM12	5,336 Icelandic ancestry individuals	NA	10q26.2		rs35214304-G	0.1122	4E-8		0.153248	[0.099-0.208] unit increase	Illumina [7506463] (imputed)	N
1559	chr10	127730727	127730728	rs34265990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	10q26.2		rs34265990-T	0.393405	3E-8		0.0116263	[0.0075-0.0157] unit decrease	Illumina [13479295] (imputed)	N
1559	chr10	127731101	127731102	rs1278259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.2		rs1278259-G	NR	6E-11		0.0095	[0.0068-0.0122] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1559	chr10	127731101	127731102	rs1278259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.2		rs1278259-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1559	chr10	127731534	127731535	rs7911793	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	10q26.2	ADAM12	rs7911793-T	0.7403	9E-6		0.2204	[0.12-0.32] unit decrease	NR [NR] (imputed)	N
1559	chr10	127731534	127731535	rs7911793	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	10q26.2	ADAM12	rs7911793-T	NR	6E-6		0.2136	[0.12-0.31] unit decrease	NR [NR] (imputed)	N
1559	chr10	127738917	127738918	rs1710278	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	10q26.2	NR	rs1710278-?	NR	9E-6		7.339	[4.24-10.44] unit decrease	Illumina [498648]	N
1559	chr10	127748788	127748789	rs4962504	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.2	ADAM12	rs4962504-A	0.1162	2E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1559	chr10	127773375	127773376	rs1278352	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	10q26.2	ADAM12	rs1278352-A	NR	9E-7	(Irritable dimension)	0.2377	[0.14-0.33] unit increase	Illumina [1871025] (imputed)	N
1559	chr10	127773375	127773376	rs1278352	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	10q26.2	ADAM12	rs1278352-?	NR	1E-6	(multivariate)			Perlegen [1871025] (imputed)	N
1560	chr10	127809195	127809196	rs1278398	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	10q26.2	ADAM12	rs1278398-?	NR	1E-6	(EA)	0.0445	[0.026-0.063] unit increase	Illumina [7176022] (imputed)	N
1560	chr10	127823150	127823151	rs1278329	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	10q26.2	ADAM12	rs1278329-G		8E-6		0.2671	unit decrease	Illumina [5767231] (imputed)	N
1560	chr10	127829011	127829012	rs1551678	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	10q26.2	ADAM12	rs1551678-C	0.37	9E-6	(EA-glucose response)	2.65	[1.49-3.81] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1560	chr10	127836839	127836840	rs1676712	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	10q26.2	ADAM12	rs1676712-?	0.03078	4E-8		4.329	[3.76-4.89]	Affymetrix [547296]	N
1560	chr10	127846668	127846669	rs12778749	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	10q26.2	ADAM12	rs12778749-?	NR	9E-6	(European, All type I)			Illumina [873935]	N
1560	chr10	127846668	127846669	rs12778749	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	10q26.2	ADAM12	rs12778749-?	NR	8E-6	(European, Endometroid subtype)			Illumina [873935]	N
1560	chr10	127852105	127852106	rs7094759	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	10q26.2	ADAM12	rs7094759-?		4E-6		1.3513513	[1.19-1.54]	Illumina [up to 4983952] (imputed)	N
1560	chr10	127852935	127852936	rs61863408	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	10q26.2	ADAM12	rs61863408-T	NR	5E-7		0.0321542	[0.02-0.045] unit decrease	Illumina [13520550] (imputed)	N
1560	chr10	127868743	127868744	rs10901553	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	10q26.2	ADAM12	rs10901553-?	NR	2E-8		0.0992	[0.064-0.134] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1561	chr10	127932764	127932765	rs4962322	29731509	Zabaneh D	2017-07-04	Mol Psychiatry	A genome-wide association study for extremely high intelligence.	Extremely high intelligence	1,238 European ancestry cases, 8,172 European ancestry controls	NA	10q26.2	ADAM12	rs4962322-A	0.085	8E-9		1.489	[1.35-1.63]	Illumina [6773587] (imputed)	N
1561	chr10	127944592	127944593	rs11244909	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.2		rs11244909-?	NR	5E-14		0.01467	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
1561	chr10	127950897	127950898	rs7090615	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.2	ADAM12	rs7090615-T	0.373881	7E-14		0.0142624	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1561	chr10	127950897	127950898	rs7090615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.2		rs7090615-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1561	chr10	127981160	127981161	rs4962336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.2		rs4962336-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1561	chr10	127981594	127981595	rs11244935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	10q26.2		rs11244935-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1562	chr10	128133900	128133901	rs145491567	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q26.2		rs145491567-?	NR	5E-6		0.5838327	[0.33-0.83] unit increase	Illumina [9875426] (imputed)	N
1562	chr10	128133900	128133901	rs145491567	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	10q26.2		rs145491567-?	NR	4E-6		0.6402102	[0.37-0.91] unit increase	Illumina [9842460] (imputed)	N
1562	chr10	128147737	128147738	rs139123090	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	10q26.2	C10orf90	rs139123090-A	0.47	4E-10	(recessive)	17.32	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1562	chr10	128174230	128174231	rs61863936	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	10q26.2	NR	rs61863936-T	0.2344	7E-6		0.1711	[0.097-0.246] unit decrease	Illumina [NR] (imputed)	N
1563	chr10	128226874	128226875	rs35113467	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	10q26.2	C10orf90	rs35113467-C	NR	5E-7		1.88	unit decrease	Illumina [6778521] (imputed)	N
1563	chr10	128226874	128226875	rs35113467	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q26.2	C10orf90	rs35113467-?	NR	2E-7		1.87		Illumina [6778521] (imputed)	N
1563	chr10	128240521	128240522	rs557552182	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q26.2	NR	rs557552182-?	NR	3E-6		1.13876	[0.66-1.61] unit increase	NR [13958389] (imputed)	N
1563	chr10	128267639	128267640	rs11245052	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	10q26.2	C10orf90	rs11245052-A		2E-6		0.3034	unit decrease	Illumina [5767231] (imputed)	N
1563	chr10	128298103	128298104	rs4962347	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q26.2	NR	rs4962347-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1563	chr10	128298103	128298104	rs4962347	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q26.2	NR	rs4962347-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1563	chr10	128303418	128303419	rs978471	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q26.2	NR	rs978471-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1563	chr10	128304507	128304508	rs1436793	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q26.2	NR	rs1436793-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1563	chr10	128305025	128305026	rs2842161	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	10q26.2	NR	rs2842161-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1563	chr10	128307608	128307609	rs140941027	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1777 sp002320035 abundance in stool	5,959 Finnish ancestry individuals	NA	10q26.2		rs140941027-G	0.0275067	4E-8		0.113985	[0.073-0.155] unit increase	Illumina [7980478] (imputed)	N
1564	chr10	128330712	128330713	rs2842169	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	10q26.2	Intergenic	rs2842169-C	0.1	1E-6		0.28	[0.17-0.40] unit increase	NR [~ 38000000] (imputed)	N
1564	chr10	128348106	128348107	rs17155120	33661925	Quistrebert J	2021-03-04	PLoS Genet	Genome-wide association study of resistance to Mycobacterium tuberculosis infection identifies a locus at 10q26.2 in three distinct populations.	Resistance to Mycobacterium tuberculosis infection	185 Vietnamese ancestry uninfected cases, 353 Vietnamese ancestry infected controls	30 uninfected cases, 127 infected controls, 118 South African Coloured uninfected cases, 136 South African Coloured uninfected controls	10q26.2	C10orf90	rs17155120-T	0.2	1E-9		0.5	[0.45-0.55]	Illumina [5591951] (imputed)	N
1564	chr10	128350239	128350240	rs56106518	33661925	Quistrebert J	2021-03-04	PLoS Genet	Genome-wide association study of resistance to Mycobacterium tuberculosis infection identifies a locus at 10q26.2 in three distinct populations.	Resistance to Mycobacterium tuberculosis infection	185 Vietnamese ancestry uninfected cases, 201 Vietnamese ancestry infected controls	NA	10q26.2	C10orf90	rs56106518-C	0.24	1E-7		0.39	[0.30-0.47]	Illumina [5591951] (imputed)	N
1564	chr10	128373706	128373707	rs10736877	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	10q26.2	C10orf90	rs10736877-A	0.51	2E-8	(AA)	0.131	[0.086-0.176] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1564	chr10	128419983	128419984	rs7078439	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	10q26.2	C10orf90, DOCK1	rs7078439-?	NR	8E-8	(FEV1/FVC < 80%)	0.044	[NR] unit increase	Illumina [522636]	N
1564	chr10	128419983	128419984	rs7078439	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	10q26.2	C10orf90, DOCK1	rs7078439-?	NR	8E-6		0.034	[NR] unit increase	Illumina [522636]	N
1564	chr10	128423872	128423873	rs10794108	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	10q26.2	C10orf90, DOCK1	rs10794108-?	NR	9E-6	(Males only)	0.037	[NR] unit increase	Illumina [522636]	N
1565	chr10	128469062	128469063	rs17769621	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	10q26.2	NR	rs17769621-G	NR	1E-6		0.5889	NR	Illumina [at least 560000] (imputed)	N
1565	chr10	128537198	128537199	rs7095775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.2		rs7095775-C	NR	4E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1565	chr10	128566963	128566964	rs11599217	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	10q26.2	C10orf90, DOCK1	rs11599217-?		7E-8	(Infliximab)	0.29	[0.19-0.39] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1565	chr10	128566963	128566964	rs11599217	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in disease activity score)	500 European ancestry individuals treated with adalimumab, 564 European ancestry individuals treated with etanercept, 441 European ancestry individuals treated with infliximab, 64 European ancestry individuals treated with other TNF inhibitors	NA	10q26.2	C10orf90, DOCK1	rs11599217-?		5E-6		0.29	[NR] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1566	chr10	128606690	128606691	rs71490795	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	10q26.2	NR	rs71490795-A	0.0225	7E-6		121.0	[69-174] unit increase	NR [9714326] (imputed)	N
1567	chr10	128771833	128771834	rs115536975	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q26.2	NR	rs115536975-?	NR	3E-7	(Native Hawaiian)	1.0725	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1567	chr10	128777389	128777390	rs9733352	23031429	Surakka I	2012-10-03	Twin Res Hum Genet	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	10q26.2	DOCK1	rs9733352-C	NR	4E-8	(APOA2)	0.06	[0.038-0.082] unit increase	Illumina [~ 2500000] (imputed)	N
1567	chr10	128777872	128777873	rs9794336	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.2	NR	rs9794336-?	NR	8E-36				Affymetrix [NR]	N
1567	chr10	128779957	128779958	rs10741150	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10q26.2		rs10741150-T	NR	2E-8		0.108	[0.071-0.145] unit increase	Affymetrix [509886] (imputed)	N
1567	chr10	128782322	128782323	rs10829439	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	10q26.2		rs10829439-A	NR	2E-8		0.109	[0.072-0.146] unit increase	Affymetrix [509886] (imputed)	N
1567	chr10	128790442	128790443	rs11592657	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	10q26.2	NR	rs11592657-A	NR	7E-6		1.27	[NR]	Illumina [up to 9792010] (imputed)	N
1567	chr10	128795522	128795523	rs4751006	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	10q26.2	Intergenic	rs4751006-?	NR	9E-6		1.7289073	[NR]	Affymetrix [492217] (imputed)	N
1567	chr10	128797716	128797717	rs2275540	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	10q26.2	DOCK1	rs2275540-?		4E-6				Affymetrix, Illumina [1348798]	N
1567	chr10	128809948	128809949	rs9418690	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	10q26.2	DOCK1	rs9418690-C	0.76	1E-6		1.28	[1.16-1.41]	Affymetrix, Illumina [3378933] (imputed)	N
1567	chr10	128837011	128837011	rs113641236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	10q26.2		rs113641236-TC	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1568	chr10	128874678	128874679	rs113847670	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance in less-fat diet	1,087 European ancestry women	NA	10q26.2	DOCK1	rs113847670-?	NR	3E-8		9.18	[NR]	NR [18717781] (imputed)	N
1568	chr10	128933991	128933992	rs2483855	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x carrot consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	10q26.2		rs2483855-A	NR	7E-6		0.1761	[0.099-0.253] unit increase	Illumina [285387]	N
1569	chr10	128976632	128976633	rs561258676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.2	NR	rs561258676-G	0.998278	3E-11				Affymetrix, Illumina [24246363] (imputed)	N
1569	chr10	129043309	129043310	rs11819364	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	10q26.2	DOCK1	rs11819364-C	0.03	9E-6	(Age 17)	0.32	[0.18-0.46] unit increase	Illumina [2293137] (imputed)	N
1569	chr10	129075673	129075674	rs10741209	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	10q26.2	NR	rs10741209-G	0.65	6E-6		1.2345679	[NR]	Illumina [747089]	N
1569	chr10	129086656	129086657	rs76283009	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q26.2	FAM196A	rs76283009-T	0.0122042443414318	1E-6	(G_unclassified_P_Firmicutes_HB)	1.50002	[0.89-2.11] unit decrease	Illumina [7711310] (imputed)	N
1570	chr10	129106765	129106766	rs4751191	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10q26.2	DOCK1	rs4751191-A	0.9946	2E-6		0.2266	[0.13-0.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1570	chr10	129135910	129135911	rs61870291	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs61870291-G	0.03136	9E-9	(FHL1)	0.004523	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129136408	129136409	rs4751240	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer or chronic obstructive pulmonary disease	237 COPD cases, 204 GI cancer cases	NA	10q26.2	DOCK1	rs4751240-?		9E-10		0.1	[0.071-0.129] unit increase	Affymetrix [418365]	N
1570	chr10	129136408	129136409	rs4751240	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer	204 cases	NA	10q26.2	DOCK1	rs4751240-?		2E-8		0.1	[0.067-0.133] kg/m2 increase	Affymetrix [418365]	N
1570	chr10	129142416	129142417	rs751008	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q26.2	DOCK1	rs751008-A	0.456	7E-7	(EA)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1570	chr10	129142416	129142417	rs751008	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	10q26.2	DOCK1	rs751008-A	0.453	2E-6		0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1570	chr10	129166037	129166038	rs11017619	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs11017619-G	0.01916	2E-9	(COQ9)	0.01372	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129177827	129177828	rs113226773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs113226773-G	0.01568	9E-10	(SFPQ)	0.03863	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129177827	129177828	rs113226773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs113226773-G	0.01568	2E-8	(SNRPD3)	0.04425	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129177827	129177828	rs113226773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs113226773-G	0.01568	2E-8	(EIF3E)	0.02703	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129177827	129177828	rs113226773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.2	NR	rs113226773-G	0.01568	1E-9	(PABPC1)	0.2428	NR unit increase	Illumina [1671387] (imputed)	N
1570	chr10	129208049	129208050	rs11017928	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	10q26.2	NR	rs11017928-?	NR	1E-6				Illumina [1735619]	N
1571	chr10	129266850	129266851	rs112720801	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q26.2	DOCK1	rs112720801-A	0.0119732555476178	5E-7	(F_Sutterellaceae_HB)	1.61489	[0.98-2.25] unit decrease	Illumina [7711310] (imputed)	N
1571	chr10	129273672	129273673	rs10830090	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	10q26.2	RARS2	rs10830090-A	NR	1E-6				Illumina [at least 756588]	N
1571	chr10	129274502	129274503	rs4363506	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA		NR	rs4363506-G	NR	1E-6				Illumina [at least 756588]	N
1571	chr10	129274502	129274503	rs4363506	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA		intergenic	rs4363506-?	NR	7E-7		1.9	[1.50-2.40]	Illumina [549062]	N
1571	chr10	129284016	129284017	rs75088562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q26.2	NR	rs75088562-C	0.999568	1E-10		2.34087	[1.63-3.05] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1571	chr10	129289144	129289145	rs61870434	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	10q26.2		rs61870434-C	NR	6E-10		0.55	[0.38-0.72] unit increase	Affymetrix [509886] (imputed)	N
1571	chr10	129304074	129304075	rs10830107	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.2	DOCK1, NPS	rs10830107-A	0.7922	5E-9		1.0287043		Affymetrix [11880941] (imputed)	N
1572	chr10	129384542	129384543	rs12774813	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.2	NR	rs12774813-?		3E-6				Illumina [4322238] (imputed)	N
1572	chr10	129421148	129421149	rs117169866	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	10q26.2	Intergenic	rs117169866-G		6E-7		0.15	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1573	chr10	129566412	129566413	rs142567778	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	10q26.2	NR	rs142567778-G	NR	5E-6		0.2339	[0.13-0.34] SD units decrease	NR [10700000] (imputed)	N
1574	chr10	129635907	129635908	rs4751538	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	10q26.2	intergenic	rs4751538-?	NR	8E-7				Affymetrix, Illumina [at least 3287443] (imputed)	N
1574	chr10	129674465	129674466	rs74810984	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	10q26.2	NR	rs74810984-C	NR	2E-6		0.2206	[0.13-0.31] SD units decrease	NR [10700000] (imputed)	N
1574	chr10	129678673	129678674	rs6482992	22658654	Chung SJ	2012-05-30	Parkinsonism Relat Disord	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NA	10q26.2	CLRN3	rs6482992-?	NR	4E-6	(congnitive outcome)	2.03	[1.47-2.79]	NR [198345]	N
1574	chr10	129710143	129710143	rs563873044	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	10q26.2		rs563873044-?	NR	4E-6		0.368137	[0.21-0.52] unit increase	Illumina [9875426] (imputed)	N
1574	chr10	129737630	129737631	rs12049671	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	10q26.2	PTPRE	rs12049671-?	NR	7E-6	(SF10)			Affymetrix [5476100] (imputed)	N
1574	chr10	129751330	129751331	rs7099752	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.2	CLRN3	rs7099752-?	NR	9E-6	(citrulline)	0.2844023	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1574	chr10	129754855	129754856	rs12416242	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.2	CLRN3	rs12416242-?	NR	7E-8	(proline)	0.35694906	[0.23-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
1576	chr10	129918680	129918681	rs7074966	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	10q26.2	MKI67	rs7074966-?	NR	6E-6		4.534	[NR] z score decrease	Illumina [6737359] (imputed)	N
1576	chr10	129932105	129932106	rs34558168	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q26.2	NR	rs34558168-C	0.241	9E-8	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
1576	chr10	129933455	129933456	rs2387326	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	10q26.2	PTPRE, MKI67	rs2387326-?	NR	1E-6	(VitKPhylloq)			Affymetrix [70897]	N
1576	chr10	129962571	129962572	rs12571194	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	10q26.2	NR	rs12571194-G	0.9514	3E-6		0.0538	[0.031-0.076] unit decrease	Illumina [up to 1980188] (imputed)	N
1576	chr10	129981876	129981877	rs527697748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.2	NR	rs527697748-C	0.999679	4E-14				Affymetrix, Illumina [24246363] (imputed)	N
1576	chr10	129998371	129998372	rs1329189	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	10q26.2	intergenic	rs1329189-?	0.62	5E-6	(CLP)	1.3	[1.47-1.16]	Illumina [NR]	N
1577	chr10	130052199	130052200	rs1255143	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	10q26.2	NR	rs1255143-C		7E-8		0.1306	[0.083-0.178] SD units decrease	NR [10700000] (imputed)	N
1577	chr10	130112023	130112024	rs2799401	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q26.2	NR	rs2799401-?	NR	3E-6		4.678	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1577	chr10	130113461	130113462	rs2799399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q26.2	Intergenic	rs2799399-T	0.4345	2E-8	(MTAG)	0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1577	chr10	130113461	130113462	rs2799399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	10q26.2	Intergenic	rs2799399-T	0.4345	5E-8		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1577	chr10	130137104	130137105	rs11818629	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	10q26.2	intergenic	rs11818629-?	NR	3E-6	(progression)			Illumina [NR]	N
1578	chr10	130233807	130233808	rs10764775	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	10q26.2	NR	rs10764775-C	0.340436585930543	6E-6	(IGP31)	0.1435	[0.081-0.206] unit increase	Illumina [~ 2500000] (imputed)	N
1578	chr10	130248925	130248926	rs9804317	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	10q26.2	RP11-264E18.1	rs9804317-?	NR	7E-6	(Animals)			Illumina [up to 563855]	N
1579	chr10	130299909	130299910	rs11016281	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	10q26.2	intergenic	rs11016281-C	0.11	9E-6	(female)	0.112	[0.063-0.161] unit increase	Illumina [6380737] (imputed)	N
1579	chr10	130346153	130346154	rs61310603	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	10q26.2	MKI67, MGMT	rs61310603-T	0.84	8E-6		1.1904762	[1.11-1.3]	NR [NR]	N
1579	chr10	130369489	130369490	rs749141	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	10q26.2	NR	rs749141-C	0.076	4E-7		0.196	[0.12-0.27] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1579	chr10	130373761	130373761	rs11408311	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.2	intergenic	rs11408311-CT	0.4522	1E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix [18391927] (imputed)	N
1579	chr10	130383237	130383238	rs193189882	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	10q26.2	intergenic	rs193189882-A	0.009	2E-6		0.71	[0.42-1] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1579	chr10	130396701	130396702	rs11016373	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	10q26.2	PTPRE, MKI67, LINC01163	rs11016373-?	NR	5E-7	(EA)	0.0099	[0.0095-0.0103] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1580	chr10	130442180	130442181	rs1575951	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	10q26.2	LINC01163	rs1575951-?		4E-6				Illumina [5970354] (imputed)	N
1580	chr10	130445218	130445219	rs10829461	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	10q26.2	NR	rs10829461-A	NR	7E-7		1600.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1580	chr10	130477107	130477108	rs10829470	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	10q26.2	NR	rs10829470-A	NR	4E-6		1800.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1580	chr10	130498574	130498575	rs549515367	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	10q26.2	RP11-442O18.2	rs549515367-A	0.0054	6E-6		0.306	[0.17-0.44] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1580	chr10	130509336	130509337	rs10829477	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	10q26.2	NR	rs10829477-C		5E-6		0.0825	[0.047-0.118] SD units decrease	NR [10700000] (imputed)	N
1581	chr10	130571474	130571475	rs12412363	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	10q26.2		rs12412363-?	NR	4E-6				Illumina [1365315]	N
1581	chr10	130629551	130629552	rs10829505	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Drug experimentation measurement	22,572 European ancestry individuals	NA	10q26.3	MKI67, MGMT	rs10829505-T	0.6939	2E-6		0.05	[0.029-0.070] unit increase	Illumina [11434023] (imputed)	N
1581	chr10	130673803	130673804	rs12249496	31749835	Sangurdekar D	2019-11-04	Front Genet	Genetic Study of Severe Prolonged Lymphopenia in Multiple Sclerosis Patients Treated With Dimethyl Fumarate.	Moderate or severe prolonged lymphopenia in dimethyl fumarate-treated relapsing-remitting multiple sclerosis	206 European ancestry cases, 1,052 European ancestry controls	NA	10q26.3	intergenic	rs12249496-?	NR	1E-6		2.2	[1.6-3.0]	Illumina [1016018]	N
1581	chr10	130677745	130677746	rs1408536	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs1408536-A	NR	6E-6		2.16	[1.55-3.01]	NR [7738399] (imputed)	N
1582	chr10	130680348	130680349	rs1408537	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs1408537-C	NR	5E-6		2.17	[1.55-3.02]	NR [7738399] (imputed)	N
1582	chr10	130682871	130682872	rs144225905	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	10q26.3	intergenic	rs144225905-T	0.001	2E-9		0.09191596	[0.062-0.122] m decrease	Illumina [24111857] (imputed)	N
1582	chr10	130683101	130683102	rs10741177	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs10741177-C	NR	4E-6		2.17	[1.56-3.03]	NR [7738399] (imputed)	N
1582	chr10	130684559	130684560	rs2152155	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs2152155-C	NR	4E-6		2.18	[1.57-3.04]	NR [7738399] (imputed)	N
1582	chr10	130684692	130684693	rs1924687	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs1924687-A	NR	4E-6		2.18	[1.57-3.04]	NR [7738399] (imputed)	N
1582	chr10	130685616	130685617	rs11016537	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs11016537-A	NR	4E-6		2.18	[1.57-3.03]	NR [7738399] (imputed)	N
1582	chr10	130686074	130686075	rs10829514	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs10829514-T	NR	3E-6		2.18	[1.57-3.03]	NR [7738399] (imputed)	N
1582	chr10	130686475	130686476	rs10764826	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs10764826-A	NR	3E-6		2.19	[1.58-3.04]	NR [7738399] (imputed)	N
1582	chr10	130686724	130686725	rs10829515	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs10829515-C	NR	5E-6		2.21	[1.57-3.09]	NR [7738399] (imputed)	N
1582	chr10	130687696	130687697	rs7076689	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs7076689-A	NR	4E-6		2.54	[1.71-3.77]	NR [7738399] (imputed)	N
1582	chr10	130688639	130688640	rs10734079	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	10q26.3	intergenic	rs10734079-T	NR	4E-6		2.63	[1.74-3.98]	NR [7738399] (imputed)	N
1582	chr10	130772390	130772391	rs10829534	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	10q26.3	intergenic	rs10829534-T	NR	5E-6		4.582	z score decrease	Illumina [5060354] (imputed)	N
1582	chr10	130798714	130798715	rs561774588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ringworm	692 East Asian ancestry cases, 178,034 East Asian ancestry controls	NA	10q26.3		rs561774588-G	0.001401638	5E-9		7.0142403	[4.66-9.37] unit increase	Illumina [13429980] (imputed)	N
1582	chr10	130798714	130798715	rs561774588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ringworm	46 European ancestry cases, 354,498 European ancestry controls, 692 East Asian ancestry cases, 178,034 East Asian ancestry controls	NA	10q26.3		rs561774588-G	NR	5E-9		7.0142	[4.66-9.37] unit increase	Affymetrix, Illumina [20458126] (imputed)	N
1583	chr10	130830937	130830938	rs12356830	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	10q26.3	Intergenic	rs12356830-T	0.646	2E-8		0.077	[0.05-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1583	chr10	130834697	130834698	rs1556659	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	10q26.3	Intergenic	rs1556659-?	NR	5E-9		0.0771	[0.051-0.103] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1583	chr10	130834697	130834698	rs1556659	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	10q26.3	MGMT	rs1556659-T	0.3832	1E-13		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1583	chr10	130834697	130834698	rs1556659	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	10q26.3	ENSG00000232985	rs1556659-T	0.38	1E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1583	chr10	130834697	130834698	rs1556659	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	10q26.3	NR	rs1556659-?	NR	1E-6		0.0406	[0.024-0.057] unit increase	Illumina [at least 560000] (imputed)	N
1583	chr10	130837272	130837273	rs372532055	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	10q26.3	intergenic	rs372532055-A	0.3664	1E-18		0.0175	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1583	chr10	130837272	130837273	rs372532055	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	10q26.3	NR	rs372532055-C		2E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
1583	chr10	130837272	130837273	rs372532055	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	10q26.3	LINC01163, MGMT	rs372532055-C	0.6332	2E-10		0.0918	[0.063-0.121] unit increase	Affymetrix [~ 11900000] (imputed)	N
1583	chr10	130837273	130837274	rs374532236	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	10q26.3	MGMT	rs374532236-T	0.378	1E-10		0.1468	[0.1-0.19] kg increase	Affymetrix [at least 17000000] (imputed)	N
1583	chr10	130863926	130863927	rs11016656	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q26.3	NR	rs11016656-C	0.178	5E-7	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1583	chr10	130869574	130869575	rs182768834	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	10q26.3	NR	rs182768834-G	NR	2E-6	(GEE model)	0.87088	[0.52-1.23] unit decrease	NR [NR] (imputed)	N
1583	chr10	130874124	130874125	rs4751058	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	10q26.3	MKLN1	rs4751058-A	0.16	5E-6	(Age 6)	1.06	[1.04-1.09] unit increase	Illumina [2461244] (imputed)	N
1583	chr10	130877557	130877558	rs73384572	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	10q26.3	NR	rs73384572-A	0.057	1E-6		0.037401006	[0.022-0.052] unit increase	Affymetrix [up to 6544775] (imputed)	N
1583	chr10	130888066	130888067	rs7901425	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	10q26.3	LINC02667	rs7901425-T	0.773311	7E-13		0.00195773	[0.0014-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
1583	chr10	130899983	130899984	rs12765566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	10q26.3		rs12765566-C	NR	2E-9		0.0182	[0.012-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1583	chr10	130910212	130910213	rs2218983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	10q26.3	NR	rs2218983-T	NR	5E-12		0.0234	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1583	chr10	130938724	130938725	rs1041530	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	10q26.3	MGMT	rs1041530-C	NR	3E-8	(PWY-6395_superpathway_of_seleno-compound_metabolism)	5.5244126	NR Z-score increase	Illumina [8100000] (imputed)	N
1584	chr10	130983937	130983938	rs1452858	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q26.3	NR	rs1452858-?	NR	2E-6		4.772	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1584	chr10	130985591	130985592	rs111563707	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	10q26.3	intergenic	rs111563707-T	0.0180158533030902	6E-6	(G_unclassified_F_Prevotellaceae_HB)	1.02672	[0.58-1.47] unit increase	Illumina [7711310] (imputed)	N
1584	chr10	131053108	131053109	rs12775298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	EBF3	rs12775298-?	NR	9E-6	(TAG 50:4)	0.2272517	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1584	chr10	131053108	131053109	rs12775298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	EBF3	rs12775298-?	NR	2E-6	(TAG 50:3)	0.24137291	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1584	chr10	131054587	131054588	rs11016721	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	10q26.3	NR	rs11016721-G	0.316	6E-6		0.32	[0.18-0.46] unit increase	Illumina [9469131] (imputed)	N
1585	chr10	131128951	131128952	rs2542615	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q26.3	MGMT	rs2542615-C	0.342139	7E-9		0.00843562	[0.0056-0.0113] unit increase	Affymetrix [12370749]	N
1585	chr10	131149254	131149255	rs141497497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	Intergenic	rs141497497-T	0.998	9E-8	(AA)	0.269	unit increase	Illumina [NR] (imputed)	N
1585	chr10	131149975	131149976	rs76518095	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	10q26.3		rs76518095-T	0.07513	1E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1585	chr10	131149975	131149976	rs76518095	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.3	MGMT	rs76518095-T	0.0772	8E-9		1.0406027		Affymetrix [11880941] (imputed)	N
1585	chr10	131185010	131185011	rs112302542	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	Intergenic	rs112302542-G	0.997	2E-8	(AA)	0.267	unit increase	Illumina [NR] (imputed)	N
1585	chr10	131201860	131201861	rs187797607	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	Intergenic	rs187797607-A	0.999	4E-6	(AA)	0.368	unit increase	Illumina [NR] (imputed)	N
1586	chr10	131228326	131228327	rs112905267	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	Intergenic	rs112905267-A	0.998	1E-9	(AA)	0.3	unit increase	Illumina [NR] (imputed)	N
1586	chr10	131234371	131234372	rs2388328	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	10q26.3	MGMT	rs2388328-C		5E-6		0.07	[0.04-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1586	chr10	131246956	131246957	rs1973698	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.3	NR	rs1973698-?		1E-7				Illumina [4322238] (imputed)	N
1586	chr10	131265544	131265545	rs16906252	26183928	Leng S	2015-07-16	Cancer Res	Implication of a Chromosome 15q15.2 Locus in Regulating UBR1 and Predisposing Smokers to MGMT Methylation in Lung.	MGMT methylation in smokers	296  European ancestry individuals with MGMT methylation, 867 European ancestry individuals without MGMT methylation	107 European and Hispanic individuals with MGMT methylation, 323 European and Hispanic individuals without MGMT methylation	10q26.3	MGMT	rs16906252-?	NR	4E-31				Illumina [1599980]	N
1586	chr10	131279790	131279791	rs12254582	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.3	MGMT	rs12254582-A	0.707613	8E-21		0.0189836	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1586	chr10	131279790	131279791	rs12254582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.3		rs12254582-?	NR	9E-23				NR [~ 8900000] (imputed)	N
1586	chr10	131279790	131279791	rs12254582	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.3		rs12254582-?	NR	3E-20		0.0201092	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1586	chr10	131306784	131306785	rs11311009	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Androstenedione levels	2,220 men	NA	10q26.3		rs11311009-C	NR	4E-8		0.0643693	[0.041-0.087] unit increase	Affymetrix [10900000] (imputed)	N
1586	chr10	131306784	131306785	rs11311009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	10q26.3		rs11311009-C	NR	3E-14		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1587	chr10	131344412	131344413	rs10829605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.3		rs10829605-T	NR	8E-13		0.0114	[0.0083-0.0145] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1587	chr10	131426021	131426022	rs477692	23047291	Brown CC	2012-11-01	Pharmacogenet Genomics	A genome-wide association analysis of temozolomide response using lymphoblastoid cell lines shows a clinically relevant association with MGMT.	Response to temozolomide	516 European ancestry lymphoblastoid cell lines	NA	10q26.3	MGMT	rs477692-?	NR	1E-8				Illumina [2074734] (imputed)	N
1587	chr10	131427660	131427661	rs4751107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q26.3	NR	rs4751107-T	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1587	chr10	131427660	131427661	rs4751107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	10q26.3	NR	rs4751107-T	NR	2E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1587	chr10	131427660	131427661	rs4751107	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	10q26.3	NR	rs4751107-T	NR	5E-10		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1587	chr10	131440317	131440318	rs4750760	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.3		rs4750760-G	0.32	2E-10		6.34	z score increase	Affymetrix [9061022] (imputed)	N
1587	chr10	131440428	131440429	rs4751108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.3		rs4751108-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1587	chr10	131448763	131448764	rs2008387	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	10q26.3	MGMT	rs2008387-A	0.33	2E-8		1.08	[1.06-1.1]	Affymetrix, Illumina [at least 8111819] (imputed)	N
1588	chr10	131476006	131476007	rs12256016	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	10q26.3	MGMT	rs12256016-G	0.262	1E-6		0.0085	[0.0052-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
1588	chr10	131476006	131476007	rs12256016	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		10q26.3	MGMT	rs12256016-G	0.268	8E-7		0.439	[0.27-0.61] unit decrease	Illumina [640625] (imputed)	N
1588	chr10	131476006	131476007	rs12256016	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		10q26.3	MGMT	rs12256016-G	0.267949	7E-6		0.403193	[0.23-0.58] unit decrease	Illumina [640625] (imputed)	N
1588	chr10	131481272	131481273	rs80312298	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	10q26.3	MGMT	rs80312298-?	NR	6E-7	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1588	chr10	131489526	131489527	rs74778840	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	10q26.3	MGMT	rs74778840-G	0.098	9E-6		1.6949153	[1.33-2.13]	Illumina [5479070] (imputed)	N
1588	chr10	131500939	131500940	rs11016883	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	10q26.3	MGMT	rs11016883-C	0.25	9E-7	(AA, ever vs never smoking)	0.01	[0.01-0.02] unit increase	Affymetrix [706791]	N
1588	chr10	131525016	131525017	rs7078706	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology and risky substance use	604 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	10q26.3		rs7078706-T	0.2103	2E-6		1.51	[1.27-1.78]	Illumina [248101]	N
1588	chr10	131539682	131539683	rs74421417	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q26.3	NR	rs74421417-?	NR	1E-5		0.170232	[0.095-0.246] unit increase	NR [13958389] (imputed)	N
1588	chr10	131556671	131556672	rs7075748	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	10q26.3	MGMT	rs7075748-?		4E-6	(African American)	0.12672214	[0.073-0.18] unit increase	Illumina [13620258] (imputed)	N
1588	chr10	131582095	131582096	rs7075383	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	10q26.3	LINC02666	rs7075383-C	0.238	6E-6		0.1	unit decrease	Illumina [5510858] (imputed)	N
1588	chr10	131590299	131590300	rs728900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	10q26.3		rs728900-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1589	chr10	131637793	131637794	rs3750827	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	10q26.3		rs3750827-A	0.011	8E-10		2.24	[1.73-2.89]	Illumina [9962324] (imputed)	N
1589	chr10	131673985	131673986	rs9804200	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	10q26.3	EBF3	rs9804200-C	0.3	6E-6		8.39	[4.74-12.04] unit increase	Illumina [2380486] (imputed)	N
1589	chr10	131699295	131699296	rs944962	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	MGMT	rs944962-?	NR	5E-6	(LPC 20:4)	0.2066139	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1590	chr10	131741694	131741695	rs744680	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	10q26.3	NR	rs744680-?	NR	8E-18		8.598	NR z score decrease	Illumina [at least 830937] (imputed)	N
1590	chr10	131743851	131743852	rs117294484	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	10q26.3	EBF3	rs117294484-?	NR	3E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1590	chr10	131755747	131755748	rs10829667	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Dorea abundance in stool	5,959 Finnish ancestry individuals	NA	10q26.3		rs10829667-A	0.144291	4E-9		0.0601071	[0.04-0.08] unit increase	Illumina [7980478] (imputed)	N
1590	chr10	131783327	131783328	rs117118217	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.3	NR	rs117118217-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1590	chr10	131783327	131783328	rs117118217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.3		rs117118217-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1590	chr10	131793561	131793562	rs111364457	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	10q26.3	NR	rs111364457-G	0.078	5E-6	(Females)	0.420974	[0.24-0.6] unit increase	Illumina [~ 6600000] (imputed)	N
1590	chr10	131830639	131830640	rs11017056	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	10q26.3	Intergenic	rs11017056-?	NR	4E-7		2.61	[1.77-3.84]	Illumina [498081]	N
1590	chr10	131844234	131844235	rs2765480	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q26.3	NR	rs2765480-?	NR	4E-7	(Gaussian-weighted model)			Illumina [501584]	N
1591	chr10	131869079	131869080	rs1180609	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	10q26.3		rs1180609-?	NR	5E-10				Illumina [1128286]	N
1591	chr10	131889796	131889797	rs7082237	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	10q26.3	intergenic	rs7082237-C	0.88	1E-6		1.2	[1.12-1.29]	Affymetrix, Illumina [7567914] (imputed)	N
1591	chr10	131975095	131975096	rs7906958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	10q26.3	GLRX3	rs7906958-C	0.787299	4E-9		0.0159435	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1591	chr10	131979269	131979270	rs10829700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	10q26.3	NR	rs10829700-A	0.797579	3E-11		0.015052	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1591	chr10	131984311	131984312	rs10741210	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	10q26.3	GLRX3	rs10741210-G	0.58	9E-6		1.22	[1.14-1.3]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1591	chr10	131988164	131988165	rs11017125	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	10q26.3	NR	rs11017125-?		2E-6				Illumina [4322238] (imputed)	N
1592	chr10	131992244	131992245	rs4751178	19786962	Roeske D	2009-09-29	Mol Psychiatry	First genome-wide association scan on neurophysiological endophenotypes points to trans-regulation effects on SLC2A3 in dyslexic children.	Speech perception in dyslexia	200 European ancestry cases	186 European ancestry cases	10q26.3	NR	rs4751178-G	NR	7E-6	(MMNb)			Illumina [297086]	N
1592	chr10	132015270	132015271	rs9943465	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	10q26.3	GLRX3, MIR378C	rs9943465-?	NR	8E-6	(Hispanic/Latino)			NR [at least 880000]	N
1592	chr10	132056414	132056415	rs4751185	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	10q26.3	GLRX3, TXNL3	rs4751185-?	0.12	7E-6				Illumina [~ 800000]	N
1592	chr10	132061196	132061197	rs2480271	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	10q26.3	intergenic	rs2480271-?	NR	3E-7				Illumina [501584]	N
1593	chr10	132141391	132141392	rs7903921	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	10q26.3	GLRX3	rs7903921-?	NR	3E-9	(EA)	0.006671	[0.0018-0.0115] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1593	chr10	132141391	132141392	rs7903921	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (1df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	10q26.3	GLRX3	rs7903921-?	NR	6E-6	(EA)	0.02599	[0.015-0.037] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1593	chr10	132157841	132157842	rs597821	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	HDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	10q26.3	RP11-540N6.1	rs597821-A	NR	3E-7		0.196185	[0.12-0.27] unit decrease	Illumina [NR] (imputed)	N
1593	chr10	132168064	132168065	rs11017221	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	10q26.3	intergenic	rs11017221-T	0.13	1E-7		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1593	chr10	132250665	132250666	rs307385	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	10q26.3	GLRX3	rs307385-T	0.23	2E-6	(Female)	1.684	[1.36-2.01]	NR [up to 1668415] (imputed)	N
1593	chr10	132251628	132251629	rs117649165	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	10q26.3	NR	rs117649165-T	0.016	1E-6	(EA)	0.1396	[0.083-0.196] unit increase	Illumina [~ 11800000] (imputed)	N
1594	chr10	132268038	132268039	rs3858306	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	10q26.3	NR	rs3858306-?	NR	7E-6	(AA)	5.11	[4.27-5.95]	Illumina [905956]	N
1594	chr10	132298944	132298945	rs10829757	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs10829757-?	NR	2E-29				Affymetrix [NR]	N
1594	chr10	132347099	132347100	rs11017328	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	10q26.3	AL355500.2	rs11017328-?		3E-7	(EA, Inherited)	2.87	[1.88-4.40]	Illumina [2421290] (imputed)	N
1594	chr10	132361597	132361598	rs74162666	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep end time	90,515 individuals	NA	10q26.3	GLRX3	rs74162666-A	NR	4E-8		0.499	[0.32-0.68] unit increase	NR [11024754] (imputed)	N
1594	chr10	132381005	132381006	rs7090078	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q26.3	NR	rs7090078-?	NR	9E-9				Illumina [7760689] (imputed)	N
1595	chr10	132405916	132405917	rs6482814	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	10q26.3	Intergenic	rs6482814-C	0.45	2E-6	(Left facial angle of en-ex-go)	0.403	[NR] unit decrease	Affymetrix [311944]	N
1595	chr10	132407512	132407513	rs1177847	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q26.3	NR	rs1177847-?	NR	7E-9				Illumina [7760689] (imputed)	N
1595	chr10	132466478	132466479	rs72848844	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10q26.3	intergenic	rs72848844-T	NR	4E-6		0.44937757	[0.26-0.64] unit decrease	Illumina [> 6200000] (imputed)	N
1596	chr10	132535793	132535794	rs74161190	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	10q26.3	NR	rs74161190-?	NR	7E-7	(AA)	3.125	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1596	chr10	132547260	132547261	rs4750829	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	intergenic	rs4750829-A	0.185	9E-6	(Energy storage )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1596	chr10	132547260	132547261	rs4750829	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	intergenic	rs4750829-A	0.185	4E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1596	chr10	132578498	132578499	rs76443714	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q26.3	NR	rs76443714-?	NR	6E-9				Illumina [7760689] (imputed)	N
1596	chr10	132618518	132618519	rs4750833	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs4750833-?	NR	2E-13				Affymetrix [NR]	N
1596	chr10	132637304	132637305	rs7094308	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	10q26.3	NR	rs7094308-T	0.424	6E-6		0.095	[0.054-0.136] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1597	chr10	132670446	132670447	rs4439433	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	10q26.3	intergenic	rs4439433-T	0.0292446	8E-6		1.96192	[1.4585-2.63909]	NR [7263501] (imputed)	N
1597	chr10	132680243	132680244	rs2117096	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	10q26.3	intergenic	rs2117096-T	0.772	5E-6		1.06386	[1.04-1.09]	NR [9372253] (imputed)	N
1597	chr10	132723002	132723003	rs1655098	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs1655098-?	NR	4E-7				Affymetrix [NR]	N
1597	chr10	132747886	132747887	rs10829848	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	10q26.3	TCERGIL	rs10829848-T	0.13	1E-7	(FI)	0.25	[0.15-0.35] unit increase	Affymetrix [5396838] (imputed)	N
1597	chr10	132747886	132747887	rs10829848	22791750	Chen G	2012-07-12	Hum Mol Genet	Genome-wide association study identifies novel loci association with fasting insulin and insulin resistance in African Americans.	Insulin-related traits	927 African American non-diabetic individuals	570 West African ancestry non-diabetic individuals	10q26.3	TCERG1L	rs10829848-T	0.13	3E-8	(IR)	0.3	[0.20-0.40] unit increase	Affymetrix [5396838] (imputed)	N
1599	chr10	132917129	132917130	rs74445317	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.3	NR	rs74445317-A	0.02091	8E-9	(MAP4)	0.01734	NR unit increase	Illumina [1671387] (imputed)	N
1599	chr10	132926407	132926408	rs11017740	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q26.3	NR	rs11017740-?	NR	3E-8				Illumina [7760689] (imputed)	N
1599	chr10	132947961	132947962	rs10741243	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	10q26.3	TCERG1L	rs10741243-G	0.93	5E-6	(Indian)	1.75	[1.38-2.23]	Illumina [~ 2000000] (imputed)	N
1599	chr10	132954246	132954247	rs11017772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.3	NR	rs11017772-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1599	chr10	132955695	132955696	rs7081254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.3		rs7081254-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1599	chr10	132976249	132976250	rs79498716	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	10q26.3	TCERG1L	rs79498716-T	0.9476	1E-7		0.114	[0.072-0.156] unit increase	Illumina [11914280] (imputed)	N
1599	chr10	133001938	133001939	rs2918130	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	10q26.3	TCERG1L	rs2918130-T	0.871539692	1E-6		1.120273	[1.07-1.17]	Illumina [10439017] (imputed)	N
1599	chr10	133013186	133013187	rs893507	34262104	Meijer AJM	2021-07-14	NPJ Precis Oncol	TCERG1L allelic variation is associated with cisplatin-induced hearing loss in childhood cancer, a PanCareLIFE study.	Cisplatin-induced hearing loss in childhood cancer	168 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American child cases, 222 European, African American or Afro-Caribbean, Hispanic or Latin American ancestry child controls	209 child cases, 171 child controls	10q26.3	TCERG1L	rs893507-C	0.15	5E-10		3.11	[2.2-4.5]	Illumina [673489] (imputed)	N
1599	chr10	133021836	133021841	rs72261809	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	10q26.3	NR	rs72261809-?	NR	2E-6		0.01972	[0.012-0.028] unit decrease	Affymetrix [9658292] (imputed)	N
1599	chr10	133033314	133033315	rs2944499	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	10q26.3		rs2944499-T	NR	9E-6	(GLM)	0.1741	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1600	chr10	133110595	133110596	rs4384309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q26.3	Intergenic	rs4384309-A	0.4819	3E-11	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1600	chr10	133110595	133110596	rs4384309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.3		rs4384309-A	0.4641	5E-13		0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1600	chr10	133110595	133110596	rs4384309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q26.3	Intergenic	rs4384309-A	0.4641	2E-15	(MTAG)	0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1600	chr10	133110595	133110596	rs4384309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q26.3	Intergenic	rs4384309-A	0.4613	1E-8	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1601	chr10	133172118	133172119	rs10734105	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	10q26.3	TCERG1L	rs10734105-G	0.375	3E-8		1.27	[1.10-1.43]	Affymetrix, Illumina [1060934] (imputed)	N
1601	chr10	133173749	133173750	rs12240945	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.3	TCERG1L	rs12240945-T	0.9741	3E-6		0.1049	[0.061-0.149] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1601	chr10	133210476	133210477	rs112148169	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	10q26.3	TCERG1L, LINC01164	rs112148169-T	NR	6E-6		4.518	NR z score decrease	Illumina [7839440] (imputed)	N
1601	chr10	133238428	133238429	rs986415672	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	10q26.3		rs986415672-T	0.006	2E-7		4.26	[2.65-5.87] unit decrease	Illumina [94681438]	N
1601	chr10	133272728	133272729	rs12243257	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	10q26.3	TCERG1L, PPP2R2D	rs12243257-G	NR	9E-6		1.35995	[0.76-1.96] unit decrease	Illumina [at least 950000] (imputed)	N
1601	chr10	133289904	133289905	rs12414342	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	10q26.3	NR	rs12414342-A	NR	3E-6	(phenotype 3)	1.79	[NR]	Illumina [> 8000000] (imputed)	N
1602	chr10	133330025	133330026	rs11018023	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	10q26.3	TCERG1L	rs11018023-A	0.175	7E-6	(Novelty seeking)	0.21	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
1603	chr10	133446982	133446983	rs7071489	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	PPP2R2D	rs7071489-?	NR	4E-6	(suberic acid)	0.29580685	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1603	chr10	133466044	133466045	rs6571245	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	BNIP3	rs6571245-?	NR	7E-6	(pyruvate)	0.2772393	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1603	chr10	133494622	133494623	rs572921313	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	10q26.3	NR	rs572921313-?	NR	6E-6		0.892559	[0.51-1.28] unit increase	NR [13958389] (imputed)	N
1603	chr10	133506516	133506517	rs12573695	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs12573695-?	NR	7E-23				Affymetrix [NR]	N
1603	chr10	133531152	133531153	rs9419702	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	10q26.3	intergenic	rs9419702-?		9E-6	(disease-free survival)	2.54	[1.68-3.83]	Illumina [729737]	N
1603	chr10	133553067	133553068	rs9419644	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAg-negative hepatitis B	161 Asian, European, African and other ancestry cases, 253 Asian, European, African and other ancestry controls	NA	10q26.3	AL450307.1, GLRX3, TCERG1L	rs9419644-G	0.08867	3E-6		1.302	[0.76-1.85] unit increase	Illumina [8102086] (imputed)	N
1604	chr10	133579415	133579416	rs4897770	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	10q26.3	NR	rs4897770-?	NR	2E-11		0.08929	NR	Illumina [802276]	N
1605	chr10	133729180	133729181	rs17881016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.3		rs17881016-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1605	chr10	133736635	133736636	rs7084062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	10q26.3		rs7084062-G	NR	4E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1605	chr10	133736635	133736636	rs7084062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	10q26.3	NR	rs7084062-G	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1605	chr10	133736635	133736636	rs7084062	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	10q26.3	NR	rs7084062-A	0.510567	1E-14		0.016201	[0.012-0.02] unit decrease	NR [NR]	N
1605	chr10	133739004	133739005	rs11591860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	10q26.3		rs11591860-A	NR	1E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1605	chr10	133739004	133739005	rs11591860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	10q26.3	Intergenic	rs11591860-A	0.2387	6E-9	(MTAG)	0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr10	133741748	133741749	rs11146134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	10q26.3		rs11146134-T	NR	5E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1605	chr10	133749293	133749294	rs12771973	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	10q26.3	PPP2R2D	rs12771973-G	0.7525	2E-8		1.0225505		Affymetrix [11880941] (imputed)	N
1605	chr10	133752591	133752592	rs11599591	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	10q26.3	NR	rs11599591-G	0.240397	4E-10				Affymetrix, Illumina [24246363] (imputed)	N
1605	chr10	133754333	133754334	rs10870270	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	10q26.3	PPP2R2D	rs10870270-?	0.24	9E-6		1.2	[1.11-1.31]	Illumina [254145]	N
1605	chr10	133757949	133757949	rs530006092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	10q26.3		rs530006092-CT	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1605	chr10	133758357	133758358	rs9419387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	10q26.3	NR	rs9419387-A	0.405212	3E-10		0.012402	[0.0086-0.0162] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1605	chr10	133772994	133772995	rs7894027	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q26.3	PPP2R2D	rs7894027-T	0.3436	3E-12		0.1987	[0.14-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
1605	chr10	133773018	133773019	rs7912283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q26.3		rs7912283-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1605	chr10	133773018	133773019	rs7912283	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q26.3	PPP2R2D	rs7912283-A	0.3541	7E-14		0.1943	[0.14-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1605	chr10	133775195	133775196	rs7921305	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	10q26.3	NR	rs7921305-A	NR	2E-8		5.633	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	10q26.3	PPP2R2D	rs12761761-T	0.2575	3E-11		0.015593326	[0.011-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q26.3	Intergenic	rs12761761-T	0.2287	1E-18	(MTAG)	0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.3		rs12761761-T	0.2395	5E-20		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	10q26.3	Intergenic	rs12761761-T	0.2395	2E-24	(MTAG)	0.0158	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	10q26.3	Intergenic	rs12761761-T	0.2517	2E-13	(MTAG)	0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	10q26.3	NR	rs12761761-?	NR	1E-6		4.835	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1605	chr10	133775374	133775375	rs12761761	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	10q26.3	PPP2R2D	rs12761761-T	NR	4E-9		0.020910395	[0.014-0.028] unit increase	Affymetrix [NR]	N
1605	chr10	133775374	133775375	rs12761761	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	10q26.3	NR	rs12761761-T	0.2369	1E-8		0.01570948	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1605	chr10	133777785	133777786	rs9419224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	10q26.3		rs9419224-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1605	chr10	133778651	133778652	rs7079591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	10q26.3		rs7079591-C	NR	2E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1605	chr10	133802736	133802737	rs55771711	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	10q26.3	BNIP3	rs55771711-?	NR	4E-8		0.01327301	[0.0085-0.018] unit increase	NR [7306098]	N
1605	chr10	133802736	133802737	rs55771711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	10q26.3		rs55771711-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1605	chr10	133802960	133802961	rs56118554	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	10q26.3		rs56118554-T	0.2127	3E-7		35.75628	z score increase	NR [6814003]	N
1605	chr10	133802960	133802961	rs56118554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	10q26.3		rs56118554-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1605	chr10	133802960	133802961	rs56118554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	10q26.3	Intergenic	rs56118554-C	0.7569	5E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1606	chr10	133839475	133839476	rs1977495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	10q26.3	RP11-45A17.3	rs1977495-T	0.1314	6E-6		0.0517	[0.029-0.074] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1606	chr10	133841038	133841039	rs2026781	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	10q26.3	JAKMIP3	rs2026781-C	NR	3E-6		1.067	[1.040-1.094]	NR [5919636] (imputed)	N
1606	chr10	133844575	133844576	rs11146126	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs11146126-?	NR	9E-21				Affymetrix [NR]	N
1606	chr10	133913724	133913725	rs7924197	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	10q26.3	NR	rs7924197-C	NR	3E-7		6160.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1606	chr10	133932945	133932946	rs7084508	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.3		rs7084508-T	0.3479	9E-9		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1607	chr10	133957760	133957761	rs954820	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	10q26.3	JAKMIP3	rs954820-C	0.44	4E-6	(IL6)			Illumina [588352]	N
1607	chr10	133978961	133978962	rs2172131	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	10q26.3		rs2172131-T	0.42	2E-9				NR [NR] (imputed)	N
1607	chr10	133978961	133978962	rs2172131	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	10q26.3		rs2172131-T	0.42	1E-12		0.011	% increase	NR [NR] (imputed)	N
1607	chr10	133978961	133978962	rs2172131	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	10q26.3	NR	rs2172131-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1607	chr10	133978961	133978962	rs2172131	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	10q26.3	NR	rs2172131-T	0.4189	2E-11		0.016870677	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
1607	chr10	133978961	133978962	rs2172131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.3		rs2172131-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1607	chr10	133984915	133984916	rs2035806	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		10q26.3	JAKMIP3	rs2035806-G	0.435427	6E-12		0.00954916	[0.0068-0.0123] unit increase	Affymetrix [12370749]	N
1607	chr10	133992688	133992689	rs4880341	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	10q26.3	NA	rs4880341-T	0.5725	3E-14		0.013	[0.0097-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
1607	chr10	133992688	133992689	rs4880341	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	10q26.3	NA	rs4880341-T	0.5725	3E-14		0.013	[0.0097-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
1607	chr10	134001747	134001748	rs2814162	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	10q26.3		rs2814162-C	0.37	9E-9		5.74	z score increase	Affymetrix [9061022] (imputed)	N
1607	chr10	134001747	134001748	rs2814162	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	10q26.3	NA	rs2814162-T		1E-12		0.0136276	[0.0099-0.0174] unit decrease	Illumina [13288253] (imputed)	N
1607	chr10	134002766	134002767	rs2101613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	10q26.3		rs2101613-G	0.49	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
1607	chr10	134002766	134002767	rs2101613	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	10q26.3	NR	rs2101613-G	0.444	5E-9				NR [9056863] (imputed)	N
1607	chr10	134004745	134004746	rs11146237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	10q26.3		rs11146237-G	NR	3E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1607	chr10	134004745	134004746	rs11146237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	10q26.3		rs11146237-G	NR	9E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1607	chr10	134018000	134018001	rs902627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	10q26.3	Intergenic	rs902627-A	0.5134	8E-9	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1607	chr10	134026446	134026447	rs1038804	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q26.3	STK32C	rs1038804-T	0.276	7E-9		0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1607	chr10	134039890	134039891	rs870427	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	10q26.3	NR	rs870427-A	0.556529	3E-7		1.0741138	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1607	chr10	134044151	134044152	rs60417571	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	10q26.3	STK32C	rs60417571-?	NR	3E-6		4.7619047		Affymetrix [8800000] (imputed)	N
1607	chr10	134046135	134046136	rs10870273	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Pneumococcal meningitis x streptococcus pneumoniae genotype cluster interaction	up to 145 European and unknown ancestry individuals	NA	10q26.3	STK32C	rs10870273-?	NR	1E-8	(cluster 8)	4.28	NR	Illumina [6800000] (imputed)	N
1607	chr10	134046707	134046708	rs7076997	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	10q26.3	DPYSL4	rs7076997-?	NR	7E-6	(histidine)	0.3701986	[0.21-0.53] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1607	chr10	134051653	134051654	rs1000535	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	10q26.3	STK32C	rs1000535-?	NR	7E-6		2.22		Illumina [6778521] (imputed)	N
1607	chr10	134058823	134058824	rs12267905	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	10q26.3	NR	rs12267905-A	NR	2E-6		1.942	[1.48-2.55]	Illumina [13976150] (imputed)	N
1607	chr10	134072025	134072026	rs3000528	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	10q26.3	NR	rs3000528-A	0.283	1E-8		0.00701295	[0.0046-0.0094] unit decrease	NR [9732723] (imputed)	N
1607	chr10	134079235	134079236	rs10870282	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	10q26.3	NR	rs10870282-?	NR	6E-6		682.38586	NR unit decrease	Illumina [2379855]	N
1608	chr10	134089749	134089750	rs11146304	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	10q26.3	NR	rs11146304-?	NR	4E-12				Affymetrix [NR]	N
1608	chr10	134105043	134105044	rs10870287	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	10q26.3		rs10870287-C	0.613	2E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1608	chr10	134109885	134109886	rs7099822	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	10q26.3	STK32C	rs7099822-C	0.421	3E-9		0.0071	[0.0047-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1608	chr10	134139481	134139482	rs55731932	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	10q26.3	LRRC27	rs55731932-T	0.3263	1E-10		0.016320731	[0.011-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1608	chr10	134161498	134161499	rs116121322	31937794	Kim YW	2020-01-14	Sci Rep	Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study.	Glaucoma (primary open-angle)	309 Korean ancestry cases, 5,400 Korean ancestry controls	875 East Asian ancestry cases,  6,716 East Asian ancestry controls	10q26.3	LRRC27	rs116121322-A	0.00046	1E-7		17.79	[7.19-44.01]	Illumina [63880]	N
1608	chr10	134182920	134182921	rs7079070	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	10q26.3	LRRC27	rs7079070-G	0.546274	1E-15		0.0165394	[0.012-0.021] unit increase	NR [16516521] (imputed)	N
1608	chr10	134191004	134191005	rs4443996	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	10q26.3	LRRC27	rs4443996-A	0.524807	1E-8		0.0218504	[0.014-0.029] unit increase	Affymetrix [641018] (imputed)	N
1608	chr10	134196285	134196286	rs76881016	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	10q26.3	LRRC27	rs76881016-A	0.928496	7E-9		0.02584	[0.017-0.035] unit decrease	Affymetrix [19400838] (imputed)	N
1608	chr10	134205354	134205355	rs3923857	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.3		rs3923857-?	NR	4E-8				NR [NR]	N
1608	chr10	134205354	134205355	rs3923857	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.3		rs3923857-?	NR	4E-8				NR [NR]	N
1608	chr10	134205354	134205355	rs3923857	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	10q26.3		rs3923857-?	NR	3E-8				NR [NR]	N
1608	chr10	134205354	134205355	rs3923857	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	10q26.3	NR	rs3923857-A	0.301	6E-6		0.016911833	[0.0096-0.0242] unit increase	Affymetrix [up to 6544775] (imputed)	N
1609	chr10	134221544	134221545	rs74383458	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	10q26.3	NR	rs74383458-?	NR	9E-6	(Native Hawaiian)	0.9857	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1609	chr10	134221544	134221545	rs74383458	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	10q26.3	NR	rs74383458-?	NR	4E-6	(Native Hawaiian)	0.9327	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1609	chr10	134224423	134224424	rs116102213	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	10q26.3	PWWP2B	rs116102213-G	0.05	8E-7	(African American)	0.56	[0.34-0.78] unit increase	Illumina [up to 13042663] (imputed)	N
1609	chr10	134233607	134233608	rs10781573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	10q26.3		rs10781573-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1609	chr10	134254150	134254151	rs61865606	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	10q26.3	RP11-432J24.3	rs61865606-?	NR	3E-7		2.564103	[1.39-4.76]	Illumina [654642] (imputed)	N
1609	chr10	134255425	134255426	rs12243075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.3		rs12243075-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1609	chr10	134255425	134255426	rs12243075	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.3		rs12243075-?	NR	4E-10		0.0472037	[0.032-0.063] unit increase	Affymetrix [20259828] (imputed)	N
1609	chr10	134266325	134266326	rs61865614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	10q26.3	NR	rs61865614-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1609	chr10	134270417	134270418	rs115782353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	10q26.3	NR	rs115782353-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1609	chr10	134288420	134288425	rs144182682	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	10q26.3	NR	rs144182682-A	0.49829	7E-6		0.07826248	[0.04-0.11] unit decrease	Illumina [9469131] (imputed)	N
1609	chr10	134295814	134295815	rs73389468	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	10q26.3	C10orf91	rs73389468-?	0.98	9E-6	(Age 20-60 years)	2.78	[1.75-4.35]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1609	chr10	134297908	134297909	rs67221163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	10q26.3		rs67221163-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1609	chr10	134308478	134308479	rs11146399	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	10q26.3	RP11, 432J24.5	rs11146399-C	0.457	6E-16		8.099829	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1609	chr10	134330219	134330220	rs4880409	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	10q26.3	NR	rs4880409-C		3E-6		0.3355	[0.19-0.48] SD units increase	NR [10700000] (imputed)	N
1609	chr10	134337139	134337140	rs4272721	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	10q26.3	NR	rs4272721-T	0.9	5E-6		0.328	[0.19-0.47] unit increase	Illumina [5418572] (imputed)	N
1609	chr10	134341962	134341963	rs7082862	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	10q26.3	intergenic	rs7082862-G	0.071	7E-6		3.851	[2.139-6.93]	Illumina [7585874] (imputed)	N
1609	chr10	134343061	134343062	rs4394754	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	10q26.3	INPP5A	rs4394754-?	NR	6E-10	(EA)	0.0109	[0.0056-0.0162] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1610	chr10	134354638	134354639	rs4880413	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	10q26.3		rs4880413-?	NR	1E-6		0.267	[0.17-0.36] unit increase	Illumina [5082878] (imputed)	N
1610	chr10	134358356	134358357	rs61861422	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	10q26.3	INPP5A	rs61861422-T	0.13	1E-8		1.23	[1.15-1.32]	Affymetrix, Illumina [7891602] (imputed)	N
1610	chr10	134413582	134413583	rs75523587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	10q26.3		rs75523587-A	NR	2E-15		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1610	chr10	134413582	134413583	rs75523587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	10q26.3		rs75523587-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1610	chr10	134422823	134422824	rs56092448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	10q26.3		rs56092448-T	NR	5E-12		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1610	chr10	134439477	134439478	rs7091957	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	10q26.3	INPP5A	rs7091957-?	NR	3E-6		0.0076	[0.0045-0.0107] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1610	chr10	134456761	134456762	rs12412313	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q26.3	INPP5A	rs12412313-A	0.7737	6E-11		0.1541	[0.11-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	10q26.3		rs1133400-G	NR	1E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	10q26.3		rs1133400-G	NR	6E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	10q26.3		rs1133400-G	NR	8E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	10q26.3		rs1133400-G	NR	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.3		rs1133400-A	0.7841	4E-20		0.24757127	[0.19-0.3] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.3		rs1133400-A	0.784	4E-14		0.14400776	[0.11-0.18] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.3		rs1133400-A	0.7829	9E-11		6.47961	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	10q26.3		rs1133400-A	0.784	2E-9		0.10317577	[0.07-0.136] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	10q26.3	INPP5A	rs1133400-A	0.780077	1E-8		0.0137577	[0.009-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	10q26.3	INPP5A	rs1133400-A	0.77784	1E-43		0.0307252	[0.026-0.035] unit decrease	NR [13737936] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	10q26.3		rs1133400-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	10q26.3		rs1133400-?	NR	4E-40				NR [~ 8900000] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	10q26.3	INPP5A	rs1133400-A	0.7981	2E-8		0.0131	[0.0086-0.0176] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	10q26.3	INPP5A	rs1133400-A	0.7883	7E-18		0.2607	[0.2-0.32] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	10q26.3		rs1133400-?	NR	1E-32		0.0289071	[0.024-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.3	INPP5A	rs1133400-A	0.779223	1E-7	(men)	0.0301746	[0.018-0.042] unit decrease	NR [17166351] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.3	INPP5A	rs1133400-A	0.778503	2E-17		0.0345878	[0.027-0.043] unit decrease	NR [17166351] (imputed)	N
1610	chr10	134459387	134459388	rs1133400	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	10q26.3	INPP5A	rs1133400-A	0.777873	1E-11	(women)	0.0396647	[0.029-0.051] unit decrease	NR [17166351] (imputed)	N
1610	chr10	134477719	134477720	rs11146456	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	10q26.3	NR	rs11146456-A	0.88	3E-9		0.0172	[0.011-0.023] unit decrease	NR [NR]	N
1611	chr10	134499717	134499718	rs12770172	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	10q26.3	INPP5A	rs12770172-A	0.7935	1E-13		0.2524	[0.19-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1611	chr10	134521552	134521553	rs2148667	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		INPP5A	rs2148667-?	NR	3E-9	(female)	1.90709	[NR] unit increase	Affymetrix [NR] (imputed)	N
1611	chr10	134522143	134522144	rs2786892	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		INPP5A	rs2786892-?	NR	2E-8	(male)	1.27987	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1611	chr10	134529971	134529972	rs873946	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	10q26.3	NR	rs873946-A		7E-6				NR [525577]	N
1611	chr10	134529971	134529972	rs873946	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	10q26.3	NR	rs873946-A		2E-6				NR [525577]	N
1611	chr10	134550699	134550700	rs12783478	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	10q26.3	NR	rs12783478-G	0.2554	2E-8				NR [9056863] (imputed)	N
1611	chr10	134568386	134568387	rs3793683	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	10q26.3	INPP5A	rs3793683-?	NR	2E-8		1.046	[1.030-1.063]	Illumina [13763073] (imputed)	N
1611	chr10	134583671	134583672	rs1571145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	10q26.3		rs1571145-G	NR	4E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1611	chr10	134597156	134597157	rs12775208	34098431	Ning K	2021-04-20	Neurobiol Aging	Improving brain age estimates with deep learning leads to identification of novel genetic factors associated with brain aging.	Relative brain age	16,998 European ancestry individuals	NA	10q26.3	NKX6-2	rs12775208-?	NR	5E-8				NR [538476]	N
1611	chr10	134609118	134609119	rs71481956	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	10q26.3	NR	rs71481956-?	NR	3E-11		6.66	NR z score increase	Illumina [at least 830937] (imputed)	N
1612	chr10	134620393	134620394	rs76929979	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	10q26.3	TTC40	rs76929979-C	NR	1E-6		0.29684737	[0.17-0.42] unit decrease	Illumina [> 6200000] (imputed)	N
1612	chr10	134730625	134730626	rs10870205	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	10q26.3	NR	rs10870205-C		5E-6		1.727	[NR]	NR [NR]	N
1613	chr10	134742521	134742522	rs115217552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.3	NR	rs115217552-T	0.01045	2E-8	(BHMT)	8.754	NR unit increase	Illumina [1671387] (imputed)	N
1613	chr10	134826644	134826645	rs61860520	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	10q26.3	TTC40, LINC01166	rs61860520-T	0.0543	4E-6		0.0719	NR unit decrease	NR [NR] (imputed)	N
1613	chr10	134832034	134832035	rs138009027	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	10q26.3	NR	rs138009027-C	0.0122	2E-8	(MGMT)	0.007202	NR unit increase	Illumina [1671387] (imputed)	N
1613	chr10	134832926	134832927	rs55816310	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	10q26.3	LOC399829, LOC100128127	rs55816310-A	0.001	1E-6		33.91	[3.51-328.09]	Illumina [1556551]	N
1613	chr10	134837577	134837578	rs35709804	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	10q26.3	NR	rs35709804-A		2E-6		0.1894	[0.11-0.27] unit decrease	Illumina [12764477] (imputed)	N
1614	chr10	134898593	134898594	rs4838694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	10q26.3		rs4838694-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1614	chr10	134909986	134909987	rs190671939	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	GPR123	rs190671939-T	1.0	3E-7	(AA)	0.539	unit increase	Illumina [NR] (imputed)	N
1614	chr10	134927873	134927874	rs61862113	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	10q26.3	NR	rs61862113-?	NR	4E-6		0.0489	[0.028-0.07] unit increase	Illumina [~ 7800000] (imputed)	N
1614	chr10	134938074	134938075	rs761777	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	10q26.3	KNDC1	rs761777-A	0.75	5E-10		0.035	unit decrease	NR [2324712] (imputed)	N
1614	chr10	134943324	134943325	rs73399159	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	10q26.3	ADGRA1	rs73399159-G	NR	2E-7	(men)	0.329974	[0.2-0.46] unit decrease	Illumina [5527232] (imputed)	N
1614	chr10	134966153	134966154	rs12768641	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.3		rs12768641-A	0.763	3E-8	(conditional-joint)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1614	chr10	134977076	134977077	rs12765185	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	10q26.3	KNDC1	rs12765185-T	0.2669	4E-8		0.0151	[0.0098-0.0204] unit decrease	NR [NR]	N
1614	chr10	134977076	134977077	rs12765185	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	10q26.3		rs12765185-A	0.2769	3E-8		0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1615	chr10	135031412	135031413	rs34304273	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	10q26.3	NR	rs34304273-T	0.040139000000000036	6E-9		0.0301591	[0.02-0.04] unit increase	Affymetrix [16583148] (imputed)	N
1615	chr10	135034266	135034267	rs182416945	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	10q26.3	KNDC1	rs182416945-A	0.12	8E-7		1.55	[1.28-1.87]	Illumina [15566900] (imputed)	N
1615	chr10	135111493	135111494	rs11101682	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	10q26.3	TUBGCP2	rs11101682-?	0.0	1E-9				Affymetrix [547296]	N
1616	chr10	135160188	135160189	rs150592309	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine with aura (age at onset)	167 Han Chinese ancestry individuals	NA	10q26.3		rs150592309-?	NR	9E-8		21.72	unit increase	Affymetrix [NR]	N
1616	chr10	135172793	135172794	rs185636671	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	Intergenic	rs185636671-A	0.999	2E-6	(AA)	0.453	unit increase	Illumina [NR] (imputed)	N
1616	chr10	135182451	135182452	rs140410716	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	10q26.3		rs140410716-T	0.015	7E-6		3.32	[1.84-5.99]	NR [127834]	N
1616	chr10	135184420	135184421	rs7894051	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	10q26.3	ECHS1	rs7894051-?	0.203	3E-10	(females)	3.525	[NR] unit decrease	Affymetrix [429783]	N
1616	chr10	135184780	135184781	rs79000481	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q26.3	ECHS1	rs79000481-CA	0.737904	3E-12	(acisoga)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
1616	chr10	135184780	135184781	rs79000481	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	10q26.3	ECHS1	rs79000481-CA	0.737904	3E-12	(acisoga)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
1616	chr10	135193248	135193249	rs4617507	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q26.3	PAOX	rs4617507-G	0.23	1E-14	(diacetylspermidine)	0.257	[0.19-0.32] unit increase	Illumina [7750367] (imputed)	N
1616	chr10	135197335	135197336	rs11101730	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	10q26.3	PAOX	rs11101730-A	0.94	3E-13	(X-03056--N-[3-(2-Oxopyrrolidin-1-yl)propyl]acetamide)	0.055	[0.039-0.071] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1616	chr10	135197375	135197376	rs11101731	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	10q26.3		rs11101731-A	NR	2E-6		1.6		Illumina [7574753] (imputed)	N
1616	chr10	135197375	135197376	rs11101731	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q26.3	PAOX	rs11101731-G	0.946893	1E-16	(N('1)-acetylspermidine)	0.418	[0.32-0.52] unit decrease	Illumina [13039987] (imputed)	N
1616	chr10	135197418	135197419	rs4240520	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	10q26.3	PAOX	rs4240520-G	0.146077	8E-30	(N1,N12-diacetylspermine)	0.373	[0.31-0.44] unit increase	Illumina [13039987] (imputed)	N
1616	chr10	135197418	135197419	rs4240520	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	10q26.3	PAOX	rs4240520-G	0.14	9E-17	(acisoga, diacetylspermidine, N1, N12-diacetylspermine, X-23656, X-23668)	0.01	[0.008-0.012] unit increase	Illumina [7750367] (imputed)	N
1616	chr10	135197418	135197419	rs4240520	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	10q26.3	PAOX	rs4240520-G	0.14	7E-12	(N1,N12-diacetylspermine)	0.469	[0.34-0.6] unit increase	Illumina [7750367] (imputed)	N
1616	chr10	135224854	135224855	rs188724679	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	10q26.3	MTG1	rs188724679-C	0.999	4E-6	(AA)	0.43	unit increase	Illumina [NR] (imputed)	N
1616	chr10	135225665	135225666	rs10857712	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	10q26.3	MTG1	rs10857712-T	0.76	3E-6		1.5129	[1.39-1.64]	Illumina [NR]	N
1616	chr10	135263386	135263387	rs2265179	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	10q26.3	NR	rs2265179-?	NR	3E-9				Illumina [7760689] (imputed)	N
1617	chr10	135306157	135306158	rs1536827	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	10q26.3	CYP2E1	rs1536827-C	0.07	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1617	chr10	135315794	135315795	rs117810762	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	10q26.3		rs117810762-G	0.982023	2E-22		0.153314	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1617	chr10	135315794	135315795	rs117810762	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	10q26.3	SPRN	rs117810762-G	0.982023	1E-14		0.06827	[0.051-0.086] unit decrease	Affymetrix [19400838] (imputed)	N
1617	chr10	135315794	135315795	rs117810762	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	10q26.3	SPRN	rs117810762-G	0.982047	1E-8		0.05011	[0.033-0.067] unit decrease	Affymetrix [19400838] (imputed)	N
1617	chr10	135315794	135315795	rs117810762	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	10q26.3	CYP2E1	rs117810762-A	0.018	1E-7		0.0298	[0.019-0.041] unit increase	Affymetrix [~ 7740000] (imputed)	N
1617	chr10	135346017	135346018	rs12257054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	10q26.3		rs12257054-A	0.980839	7E-9		0.0867569	[0.057-0.116] unit decrease	NR [11722792] (imputed)	N
1617	chr10	135351136	135351137	rs2070676	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA		CYP2E1	rs2070676-?		1E-7				Illumina [479403]	N
1617	chr10	135351173	135351174	rs2070677	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	10q26.3	CYP2E1	rs2070677-?		1E-7				Illumina [479403]	N
1617	chr10	135352152	135352153	rs2249694	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	10q26.3	CYP2E1	rs2249694-A	0.225	3E-6	(Height z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1617	chr10	135366517	135366518	rs72866768	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Childhood body mass index	828 Mexican-Mestizo ancestry individuals	NA	10q26.3	CYP2E1	rs72866768-G	0.02	3E-8		5.1	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1618	chr10	135417087	135417088	rs11101885	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	10q26.3	NR	rs11101885-C	0.118	9E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
586	chr11	175338	175339	rs147891151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p15.5	BET1L, RP11-304M2.3	rs147891151-A	0.254536	1E-37		0.035620473	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	186603	186604	rs7124615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	11p15.5		rs7124615-C	NR	2E-14		0.1228	[0.091-0.154] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
586	chr11	186603	186604	rs7124615	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	11p15.5	SCGB1C1, BET1L	rs7124615-C	0.86	1E-20		1.1627907	[1.12-1.2]	Affymetrix, Illumina [NR] (imputed)	N
586	chr11	193111	193112	rs7951297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs7951297-T	0.347098	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
586	chr11	193862	193863	rs2294081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.5	SCGB1C1	rs2294081-C	0.471842	1E-10		0.017911457	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	193862	193863	rs2294081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	SCGB1C1	rs2294081-C	0.471828	2E-35		0.05212545	[0.044-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	193862	193863	rs2294081	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	11p15.5		rs2294081-?	0.472	1E-8		0.002692	unit decrease	NR [6200000] (imputed)	N
586	chr11	193862	193863	rs2294081	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	11p15.5		rs2294081-?	0.472	1E-10		0.007135	unit decrease	NR [6200000] (imputed)	N
586	chr11	193862	193863	rs2294081	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	11p15.5		rs2294081-?	0.472	2E-7		0.007061	unit decrease	NR [6200000] (imputed)	N
586	chr11	193862	193863	rs2294081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.5	SCGB1C1	rs2294081-C	0.4738	9E-106		0.07995839	[0.073-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr11	196605	196606	rs28416859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p15.5	NR	rs28416859-C	0.375688	3E-15		0.018515	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
586	chr11	196943	196944	rs11604127	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	11p15.5		rs11604127-T	0.167843	2E-21		4.809508	[3.82-5.8] unit increase	NR [NR]	N
586	chr11	196943	196944	rs11604127	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11p15.5		rs11604127-C	0.769	4E-149				Affymetrix [10369434] (imputed)	N
586	chr11	196943	196944	rs11604127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.5	ODF3	rs11604127-T	0.231993	8E-126		0.078796245	[0.072-0.085] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	196943	196944	rs11604127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	ODF3	rs11604127-T	0.231965	6E-41		0.0677696	[0.058-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	196943	196944	rs11604127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.5	NR	rs11604127-T	0.226498	2E-362		0.092349	[0.088-0.097] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
586	chr11	196943	196944	rs11604127	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11p15.5	ODF3	rs11604127-T	0.2356	4E-103		0.09307401	[0.085-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr11	196943	196944	rs11604127	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.5	ODF3	rs11604127-T	0.2361	7E-163		0.1163212	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr11	197336	197337	rs3802984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.5		rs3802984-A	NR	1E-12		0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
586	chr11	199255	199256	rs3741411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	11p15.5	NR	rs3741411-G	0.479062	2E-15		0.035806	[0.027-0.045] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
586	chr11	199255	199256	rs3741411	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	11p15.5	ODF3	rs3741411-?	NR	3E-10		0.04892	[0.034-0.064] unit increase novel	Illumina [6108953] (imputed)	N
586	chr11	199491	199492	rs72878024	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	11p15.5	ODF3	rs72878024-A	0.08	6E-6		0.045	unit decrease	Affymetrix, Illumina [up to 32463442] (imputed)	N
586	chr11	199491	199492	rs72878024	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	11p15.5		rs72878024-G	0.92	6E-12		1.1764705	[1.12-1.22]	Affymetrix, Illumina [42907111] (imputed)	N
586	chr11	199491	199492	rs72878024	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	11p15.5	ODF3	rs72878024-G	0.08	1E-12		1.1764705	[1.12-1.22]	Affymetrix, Illumina [42907111] (imputed)	N
586	chr11	200342	200343	rs55966801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11p15.5		rs55966801-T	0.77	3E-47				Affymetrix [10369434] (imputed)	N
586	chr11	200342	200343	rs55966801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.5	BET1L	rs55966801-C	0.231281	9E-52		0.040959165	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	200342	200343	rs55966801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11p15.5	BET1L	rs55966801-C	0.2309	3E-24		0.04483173	[0.036-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr11	201921	201922	rs111876722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11p15.5		rs111876722-C	NR	4E-9		0.0885	[0.059-0.118] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
586	chr11	202016	202017	rs73386631	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		ODF3, BET1L	rs73386631-T	NR	4E-11		1.06	[1.04-1.08]	Affymetrix [9869154] (imputed)	N
586	chr11	202252	202253	rs939916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	BET1L	rs939916-A	0.687006	1E-17		0.033973433	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	202564	202565	rs11245990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	11p15.5		rs11245990-T	0.124347	7E-21		0.0444106	[0.035-0.054] unit decrease	Illumina [13479135] (imputed)	N
586	chr11	202564	202565	rs11245990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	11p15.5		rs11245990-T	0.124411	1E-9		0.0282907	[0.019-0.037] unit decrease	Illumina [13478948] (imputed)	N
586	chr11	202778	202779	rs11245994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	11p15.5	NR	rs11245994-C	0.88235	3E-16		0.047714	[0.036-0.059] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
586	chr11	202855	202856	rs11602954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.5	NR	rs11602954-G	0.772364	3E-543		0.114039	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
586	chr11	202855	202856	rs11602954	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	11p15.5	NR	rs11602954-?	NR	2E-8		4.085244	[2.66-5.51] unit increase	Illumina [30743395] (imputed)	N
586	chr11	202855	202856	rs11602954	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	11p15.5	ODF3, RIC8A, SIRT3, BET1L, PSMD13, SCGB1C1	rs11602954-G	0.78	5E-12		6.46	[NR] unit decrease	Illumina [476395]	N
586	chr11	202855	202856	rs11602954	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p15.5	BET1L	rs11602954-A	0.24	2E-6		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
586	chr11	202855	202856	rs11602954	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	11p15.5	BET1L	rs11602954-G	NR	1E-14		0.01	[0.009-0.017] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
586	chr11	203234	203235	rs73386640	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	11p15.5	BET1L	rs73386640-?	NR	2E-10		0.0921639	[0.064-0.121] unit increase	Illumina [19707525] (imputed)	N
586	chr11	203787	203788	rs2280543	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	11p15.5	NR	rs2280543-T	0.101	1E-14		0.238	[0.18-0.3] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
586	chr11	203787	203788	rs2280543	22286173	Low SK	2012-01-27	Hum Mol Genet	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	11p15.5	BET1L	rs2280543-T	0.124	3E-6		1.251	[1.141-1.371]	Illumina [565149]	N
586	chr11	203787	203788	rs2280543	21460842	Cha PC	2011-04-03	Nat Genet	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	11p15.5	ODF3, RIC8A, SIRT3, BET1L	rs2280543-G	0.88	4E-12		1.39	[1.17-1.64]	Illumina [457044]	N
586	chr11	204679	204680	rs11245997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.5		rs11245997-A	NR	1E-18		0.03	[0.023-0.037] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
586	chr11	204679	204680	rs11245997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.5		rs11245997-A	NR	2E-10		0.0251	[0.017-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
586	chr11	204679	204680	rs11245997	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	11p15.5	NR	rs11245997-A	NR	3E-14		1.1363		Affymetrix [9869154] (imputed)	N
586	chr11	204679	204680	rs11245997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11245997-A	0.0634381	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
586	chr11	204679	204680	rs11245997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11245997-A	0.0605922	2E-16				Affymetrix, Illumina [24246363] (imputed)	N
586	chr11	205020	205021	rs72878027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p15.5		rs72878027-G	NR	1E-234		0.0898	[0.085-0.095] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
586	chr11	205197	205198	rs3782123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.5		rs3782123-A	NR	7E-42		0.0301	[0.026-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
586	chr11	205197	205198	rs3782123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.5	BET1L	rs3782123-A	0.7327	1E-21		0.027275221	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	205197	205198	rs3782123	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs3782123-C	0.281717	1E-63				Affymetrix, Illumina [22063850] (imputed)	N
586	chr11	205197	205198	rs3782123	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.5	NR	rs3782123-C	0.269168	4E-66		0.037169	[0.033-0.041] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
586	chr11	205197	205198	rs3782123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.5		rs3782123-?	NR	7E-49				NR [~ 8900000] (imputed)	N
586	chr11	205197	205198	rs3782123	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	11p15.5	BET1L	rs3782123-C	0.3205	2E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
586	chr11	205197	205198	rs3782123	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11p15.5	BET1L	rs3782123-A	0.7307	4E-24		0.04065708	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr11	205779	205780	rs3782122	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	11p15.5	BET1L	rs3782122-?	NR	4E-14		0.04825	[0.036-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr11	205779	205780	rs3782122	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11p15.5	BET1L	rs3782122-?	NR	3E-13		0.04663	[0.034-0.059] unit increase novel	Illumina [6108953] (imputed)	N
586	chr11	207399	207400	rs71487219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	11p15.5		rs71487219-G	0.448618	2E-14		0.0282093	[0.021-0.035] unit decrease	Illumina [13477028] (imputed)	N
586	chr11	207461	207462	rs11245998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	11p15.5		rs11245998-G	0.446096	2E-8		0.0241521	[0.016-0.033] unit decrease	Illumina [13466143] (imputed)	N
586	chr11	207461	207462	rs11245998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11245998-G	0.66994	1E-13				Affymetrix, Illumina [21126107] (imputed)	N
586	chr11	207461	207462	rs11245998	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	11p15.5	BET1L, RIC8A	rs11245998-?	NR	3E-12		0.02987	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr11	208234	208235	rs11606393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11606393-A	0.171306	1E-345				Affymetrix, Illumina [24588908] (imputed)	N
586	chr11	210898	210899	rs11246001	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	Intergenic	rs11246001-?		3E-15		1.0752687	[1.05-1.1]	Illumina [7645193] (imputed)	N
586	chr11	210898	210899	rs11246001	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	Intergenic	rs11246001-?		1E-20		1.2987013	[1.23-1.39]	Illumina [7645193] (imputed)	N
586	chr11	210898	210899	rs11246001	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11p15.5	BET1L	rs11246001-C	0.956	5E-12		1.2195122	[1.15-1.28]	Affymetrix, Illumina [43421991] (imputed)	N
586	chr11	213722	213723	rs11246003	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p15.5		rs11246003-T	0.9583	3E-10		0.1283	[0.089-0.168] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
586	chr11	213739	213740	rs12226698	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	11p15.5	RIC8A	rs12226698-?	0.044	5E-8		1.1312678	[1.08-1.19]	Affymetrix [NR] (imputed)	N
586	chr11	214543	214544	rs10081	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	11p15.5	RIC8A	rs10081-T	NR	1E-7	(male)	1.0528	[1.03-1.07]	Affymetrix [9869154] (imputed)	N
586	chr11	215903	215904	rs12226402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	11p15.5	NR	rs12226402-G	0.87294	8E-15		0.04762	[0.036-0.06] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
586	chr11	215903	215904	rs12226402	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	2,820 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	11p15.5		rs12226402-A	0.126492689	2E-12		1.3381287	[1.234301783-1.45068935]	Illumina [8919992] (imputed)	N
586	chr11	216055	216056	rs12226697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.5		rs12226697-A	0.12259	2E-16		0.045076	[0.034-0.056] unit increase	Illumina [13476266] (imputed)	N
586	chr11	216055	216056	rs12226697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11p15.5		rs12226697-A	0.122653	4E-8		0.0304349	[0.02-0.041] unit increase	Illumina [13476299] (imputed)	N
586	chr11	216055	216056	rs12226697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs12226697-A	0.0600632	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
586	chr11	219537	219538	rs4758633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p15.5		rs4758633-G	NR	3E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
586	chr11	219537	219538	rs4758633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p15.5	SIRT3	rs4758633-G	0.543172	1E-9		0.013566241	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	219537	219538	rs4758633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p15.5	SIRT3	rs4758633-G	0.543164	8E-15		0.01728614	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	223118	223119	rs3782116	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	11p15.5	NR	rs3782116-C	0.704102	4E-6		4.61521	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
586	chr11	224062	224063	rs12222188	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Uterine fibroids	5,954 Japanese ancestry cases, 95,010 Japanese ancestry controls	NA	11p15.5		rs12222188-A	0.124840433	1E-24		0.7155242	[0.671147676-0.762834869]	Illumina [8919992] (imputed)	N
586	chr11	224844	224845	rs73392700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11p15.5		rs73392700-C	NR	5E-53		0.2686	[0.23-0.3] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
586	chr11	224844	224845	rs73392700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	11p15.5		rs73392700-C	0.124013681	4E-12		0.27741098	[0.2-0.36] unit increase	Illumina [13426064] (imputed)	N
586	chr11	224844	224845	rs73392700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11p15.5		rs73392700-C	NR	4E-8		0.0866	[0.056-0.117] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
586	chr11	224844	224845	rs73392700	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p15.5	SIRT3	rs73392700-?	NR	3E-11		0.0636127	[0.045-0.082] unit increase	Illumina [4804024] (imputed)	N
586	chr11	225195	225196	rs507139	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11p15.5	SIRT3	rs507139-G	0.91118	3E-16		1.2048193	[1.16-1.27]	Affymetrix, Illumina [43421991] (imputed)	N
586	chr11	226756	226757	rs12419995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.5	SIRT3	rs12419995-T	0.631294	3E-28		0.027163604	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	226756	226757	rs12419995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.5	SIRT3	rs12419995-T	0.631165	6E-15		0.019366773	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	229438	229439	rs117629395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.5		rs117629395-T	NR	6E-15		0.0486	[0.036-0.061] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
586	chr11	229438	229439	rs117629395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	11p15.5		rs117629395-T	NR	6E-10		0.2069	[0.14-0.27] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
586	chr11	229976	229977	rs7104764	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p15.5	SIRT3	rs7104764-G	0.25	4E-8		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
586	chr11	231304	231305	rs11602248	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	11p15.5		rs11602248-A	0.8094	1E-10		0.0791	[0.055-0.103] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
586	chr11	232854	232855	rs547025	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	11p15.5	NR	rs547025-T	0.93	2E-6		1.22	[1.13-1.34]	Affymetrix [10308721] (imputed)	N
586	chr11	232854	232855	rs547025	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p15.5	RIC8A, BET1L	rs547025-T	0.92	2E-14		1.13	[1.09-1.16]	Affymetrix, Illumina [8662096] (imputed)	N
586	chr11	232854	232855	rs547025	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p15.5		rs547025-T	0.9241	1E-14		0.1189	[0.089-0.149] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
586	chr11	234348	234349	rs11607019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11607019-T	0.780225	5E-541				Affymetrix, Illumina [17210439] (imputed)	N
586	chr11	234450	234451	rs4980325	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p15.5	SIRT3	rs4980325-T	0.5275	5E-14		0.0108	[0.0081-0.0135] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
586	chr11	235893	235894	rs9795476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p15.5		rs9795476-?	NR	4E-9				NR [~ 8900000] (imputed)	N
586	chr11	241123	241124	rs12225799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11p15.5		rs12225799-G	0.128618657	3E-45		0.30280972	[0.26-0.34] unit decrease	Illumina [13401454] (imputed)	N
586	chr11	241123	241124	rs12225799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11p15.5		rs12225799-G	0.122705224	3E-8		0.09937199	[0.064-0.135] unit increase	Illumina [13427711] (imputed)	N
586	chr11	241123	241124	rs12225799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	11p15.5		rs12225799-G	NR	1E-11		0.2656	[0.19-0.34] unit increase	Affymetrix, Illumina [25841674] (imputed)	N
586	chr11	241123	241124	rs12225799	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	11p15.5	PSMD13	rs12225799-G	0.13	1E-8		0.036	NR unit decrease	Illumina [9591901] (imputed)	N
586	chr11	241123	241124	rs12225799	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	BET1L, RIC8A	rs12225799-?		4E-17		1.0752687	[1.06-1.1]	Illumina [7645193] (imputed)	N
586	chr11	241123	241124	rs12225799	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	BET1L, RIC8A	rs12225799-?		1E-21		1.3157895	[1.25-1.39]	Illumina [7645193] (imputed)	N
586	chr11	241123	241124	rs12225799	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	BET1L, RIC8A	rs12225799-?		3E-16		0.81		Illumina [7645193] (imputed)	N
586	chr11	241123	241124	rs12225799	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	BET1L, RIC8A	rs12225799-?		4E-17				Illumina [7645193] (imputed)	N
586	chr11	241283	241284	rs138060871	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	BET1L, RIC8A	rs138060871-?		8E-16	(uterine fibroid)			Illumina [7645193] (imputed)	N
586	chr11	242568	242569	rs35448214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p15.5	PSMD13	rs35448214-C	0.392281	3E-9		0.01366423	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr11	242858	242859	rs55781332	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	11p15.5	NR	rs55781332-A	0.7823	7E-10		0.1088	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
586	chr11	242858	242859	rs55781332	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.5	PSMD13	rs55781332-A	0.7831	8E-16		0.0552	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
586	chr11	242858	242859	rs55781332	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	11p15.5	PSMD13	rs55781332-?	0.264	1E-8		0.022	[NR] fL decrease	NR [16536512] (imputed)	N
586	chr11	243267	243268	rs505404	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.5	NR	rs505404-T	0.7623	9E-13	(European)	0.0521	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
586	chr11	243267	243268	rs505404	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	11p15.5	PSMD13, NLRP6	rs505404-G	NR	7E-25		4.662	[3.77-5.55] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
586	chr11	244551	244552	rs2272566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs2272566-?	NR	7E-9				NR [~ 8900000] (imputed)	N
586	chr11	248015	248016	rs577357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11p15.5		rs577357-T	0.16864	2E-8		0.0265513	[0.017-0.036] unit decrease	Illumina [13478928] (imputed)	N
586	chr11	251033	251034	rs6598057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.5	NR	rs6598057-T	NR	1E-12		0.024	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
586	chr11	252648	252649	rs6540	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	11p15.5	NR	rs6540-A	0.02028	3E-6		3.038	[1.867-4.944]	Illumina [274400]	N
586	chr11	253957	253958	rs2686878	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs2686878-A	NR	1E-10	(conditional)	0.078	[0.054-0.102] unit increase	Affymetrix [9869154] (imputed)	N
586	chr11	256975	256976	rs741735	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	11p15.5	NR	rs741735-A	0.2445	1E-8		0.0170537	[0.011-0.023] unit increase	Affymetrix [3505788] (imputed)	N
586	chr11	257307	257308	rs939924	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	11p15.5		rs939924-?	NR	5E-8				Affymetrix [NR] (imputed)	N
586	chr11	258022	258023	rs374499153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.5		rs374499153-C	0.118019	4E-14		0.030396115	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
586	chr11	258022	258023	rs374499153	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11p15.5	NR	rs374499153-C	NR	3E-15		0.049643	[0.037-0.062] unit increase	Affymetrix [16832071] (imputed)	N
586	chr11	258908	258909	rs2686876	29762745	Claus EB	2018-05-12	Neuro Oncol	Genome-wide association analysis identifies a meningioma risk locus at 11p15.5.	Meningioma	1,606 European ancestry cases, 9,823 European ancestry controls	114 European ancestry cases, 406 European ancestry controls, 418 cases, 1,852 controls	11p15.5	RIC8A	rs2686876-T	0.910	1E-8		1.44	[1.27-1.63]	Affymetrix, Illumina [up to 9213034] (imputed)	N
586	chr11	262105	262106	rs151035694	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11p15.5		rs151035694-G	0.908	2E-19				Affymetrix [10369434] (imputed)	N
587	chr11	262181	262182	rs550477355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.5	NR	rs550477355-C	0.282181	5E-23		0.025455905	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	262181	262182	rs550477355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.5	NR	rs550477355-C	0.282184	4E-14		0.01991007	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	262181	262182	rs550477355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.5		rs550477355-C	0.282127	3E-13		0.01866259	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	262181	262182	rs550477355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.5		rs550477355-C	0.282138	3E-11		0.01704912	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	263041	263042	rs7113235	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	11p15.5	PSMD13	rs7113235-A	0.4293	4E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
587	chr11	268433	268434	rs117048751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11p15.5		rs117048751-G	NR	4E-9		0.0301	[0.02-0.04] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
587	chr11	270513	270514	rs17156153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.5	NR	rs17156153-T	NR	2E-17		0.0381	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	270714	270715	rs17655730	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	11p15.5		rs17655730-?	0.2453	3E-10		0.003468	unit decrease	NR [6200000] (imputed)	N
587	chr11	270714	270715	rs17655730	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	11p15.5		rs17655730-?	0.2453	2E-8		0.007283	unit decrease	NR [6200000] (imputed)	N
587	chr11	270714	270715	rs17655730	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	11p15.5		rs17655730-?	0.2453	3E-6		0.00744	unit decrease	NR [6200000] (imputed)	N
587	chr11	270714	270715	rs17655730	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	11p15.5	PSMD13, NLRP6	rs17655730-T	NR	2E-15		0.01	[0.008-0.012] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr11	274187	274188	rs11246043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.5	NLRP6	rs11246043-G	0.105055	4E-9		0.023241954	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	291520	291521	rs117298830	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11p15.5	NR	rs117298830-?	NR	2E-21		0.05521	[0.044-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
587	chr11	296254	296255	rs12277152	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11p15.5	PGGHG, IFITM5	rs12277152-A	0.048	1E-71		17.9	z-score increase	Affymetrix [4311822] (imputed)	N
587	chr11	296254	296255	rs12277152	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11p15.5	ATHL1	rs12277152-?	NR	3E-38		0.06419	[0.054-0.074] unit increase novel	Illumina [6108953] (imputed)	N
587	chr11	297969	297970	rs3817640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p15.5		rs3817640-T	NR	3E-92		0.0697	[0.063-0.076] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
587	chr11	297969	297970	rs3817640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	11p15.5		rs3817640-T	0.274125	3E-50		0.0651038	[0.057-0.074] unit increase	Illumina [13474352] (imputed)	N
587	chr11	297969	297970	rs3817640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs3817640-T	NR	2E-48		0.0788	[0.068-0.089] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	297969	297970	rs3817640	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.5	IFITM5	rs3817640-?		7E-39		0.067	[0.057-0.077] unit decrease	Illumina [31500000] (imputed)	N
587	chr11	300363	300364	rs7111803	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11p15.5		rs7111803-C	0.506	3E-11				Affymetrix [10369434] (imputed)	N
587	chr11	305405	305406	rs4758639	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.5	NR	rs4758639-A	0.663576	1E-13		0.00659693	[0.0048-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
587	chr11	305405	305406	rs4758639	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.5	NR	rs4758639-A	0.663576	2E-11		0.00656666	[0.0046-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
587	chr11	305618	305619	rs6421984	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11p15.5	IFITM2	rs6421984-T	0.486126	8E-124		0.00539045	[0.0049-0.0058] unit decrease	Affymetrix [13995440] (imputed)	N
587	chr11	305618	305619	rs6421984	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11p15.5	IFITM5, IFITM2	rs6421984-T	0.54328	7E-6		1.04	[1.02-1.14]	NR [8126035] (imputed)	N
587	chr11	305618	305619	rs6421984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs6421984-C	0.529913	3E-16				Affymetrix, Illumina [19905671] (imputed)	N
587	chr11	305618	305619	rs6421984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11p15.5	NR	rs6421984-C	0.514051	7E-19		0.018366	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
587	chr11	305618	305619	rs6421984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.5		rs6421984-?	NR	3E-9				NR [~ 8900000] (imputed)	N
587	chr11	305618	305619	rs6421984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs6421984-C	0.513	3E-25		0.03705163	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	306790	306791	rs10902121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs10902121-C	0.335706	4E-16		0.020277504	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	306883	306884	rs10751647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11p15.5		rs10751647-C	NR	9E-9		0.0517	[0.034-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
587	chr11	306883	306884	rs10751647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs10751647-C	0.403734	2E-18		0.02272051	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	306883	306884	rs10751647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs10751647-C	0.468597	1E-29				Affymetrix, Illumina [23467995] (imputed)	N
587	chr11	306883	306884	rs10751647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p15.5	NR	rs10751647-C	0.401055	2E-32		0.023981	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
587	chr11	306883	306884	rs10751647	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11p15.5	IFITM2	rs10751647-C	0.40255	8E-9		0.05415626	[0.036-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
587	chr11	306883	306884	rs10751647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs10751647-C	0.3948	2E-9		0.02239251	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	306919	306920	rs7115703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs7115703-A	0.512585	4E-56		0.039754853	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	306919	306920	rs7115703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.5		rs7115703-?	NR	4E-64				NR [~ 8900000] (imputed)	N
587	chr11	306919	306920	rs7115703	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs7115703-A	0.5124	4E-52		0.05432826	[0.047-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	307035	307036	rs3809112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11p15.5		rs3809112-C	NR	5E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
587	chr11	307035	307036	rs3809112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.5	IFITM2, RP11-326C3.4	rs3809112-C	0.335538	3E-27		0.025542473	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	307695	307696	rs7480524	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11p15.5	IFITM2	rs7480524-C	0.5122	7E-44		0.04962213	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	307807	307808	rs7481219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p15.5	NR	rs7481219-A	0.413482	4E-10		0.00777604	[0.0052-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
587	chr11	307807	307808	rs7481219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p15.5	NR	rs7481219-A	0.413482	4E-9		0.00863786	[0.0057-0.0116] unit increase	Affymetrix [16585866] (imputed)	N
587	chr11	307960	307961	rs3888187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	11p15.5	IFITM2	rs3888187-C	0.5142	7E-11		0.0236202	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	307998	307999	rs28521954	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11p15.5	IFITM2	rs28521954-G	0.3709	1E-36		0.04773897	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308064	308065	rs9704108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs9704108-C	NR	3E-16		0.0378	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	308064	308065	rs9704108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.5	IFITM2	rs9704108-C	0.9257289	2E-10		0.027218865	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308064	308065	rs9704108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.5	IFITM2	rs9704108-C	0.9257373	2E-18		0.037592065	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308064	308065	rs9704108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	IFITM2	rs9704108-C	0.9257173	4E-15		0.033705752	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	308064	308065	rs9704108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2	rs9704108-C	0.9254334	6E-11		0.028045395	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	308064	308065	rs9704108	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11p15.5	IFITM2	rs9704108-C	0.928	6E-12		0.05351307	[0.038-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308179	308180	rs10398	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs10398-G	NR	2E-9		0.0181	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	308179	308180	rs10398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2	rs10398-G	0.189181	1E-30		0.037010964	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	308179	308180	rs10398	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11p15.5	IFITM2	rs10398-G	0.1878	9E-37		0.05782472	[0.049-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308289	308290	rs1058900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11p15.5	IFITM2	rs1058900-C	0.568038	2E-14		0.017513804	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308289	308290	rs1058900	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	11p15.5	IFITM2	rs1058900-T	0.415	9E-9		1.05	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
587	chr11	308289	308290	rs1058900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.5		rs1058900-?	NR	4E-12				NR [~ 8900000] (imputed)	N
587	chr11	308313	308314	rs14408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.5		rs14408-C	NR	2E-56		0.0395	[0.035-0.044] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
587	chr11	308313	308314	rs14408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.5		rs14408-C	NR	6E-78		0.0465	[0.042-0.051] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
587	chr11	308313	308314	rs14408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11p15.5		rs14408-T	0.633	6E-11				Affymetrix [10369434] (imputed)	N
587	chr11	308313	308314	rs14408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	11p15.5		rs14408-T	0.633	2E-13				Affymetrix [10369434] (imputed)	N
587	chr11	308313	308314	rs14408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	11p15.5		rs14408-T	0.633	6E-39				Affymetrix [10369434] (imputed)	N
587	chr11	308313	308314	rs14408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	11p15.5		rs14408-T	0.633	2E-21				Affymetrix [10369434] (imputed)	N
587	chr11	308313	308314	rs14408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.5	IFITM2	rs14408-C	0.368057	8E-55		0.039325923	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308313	308314	rs14408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.5	IFITM2	rs14408-C	0.368121	6E-11		0.015109822	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308313	308314	rs14408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2	rs14408-C	0.3681	3E-17		0.0226605	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308313	308314	rs14408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.5	IFITM2	rs14408-C	0.368042	2E-73		0.044411413	[0.04-0.049] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	308313	308314	rs14408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2	rs14408-C	0.368068	6E-38		0.029972525	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	308313	308314	rs14408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs14408-C	0.521522	1E-95				Affymetrix, Illumina [24649327] (imputed)	N
587	chr11	308313	308314	rs14408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.5	NR	rs14408-C	0.368488	3E-93		0.043665	[0.039-0.048] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
587	chr11	308313	308314	rs14408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.5	NR	rs14408-C	0.368528	6E-11		0.013778	[0.0097-0.0179] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
587	chr11	308313	308314	rs14408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs14408-C	0.465718	4E-118				Affymetrix, Illumina [23114412] (imputed)	N
587	chr11	308313	308314	rs14408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.5	NR	rs14408-C	0.36831	1E-115		0.049297	[0.045-0.054] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	6E-48		0.05471323	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	5E-44		0.05233752	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	6E-44		0.05223236	[0.045-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	7E-42		0.0512097	[0.044-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	1E-18		0.03288403	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308313	308314	rs14408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11p15.5	IFITM2	rs14408-C	0.3668	8E-48		0.05469992	[0.047-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	308362	308363	rs1058935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11p15.5		rs1058935-C	NR	1E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
587	chr11	309126	309127	rs1059091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11p15.5		rs1059091-G	NR	2E-35		0.0222	[0.019-0.026] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
587	chr11	309126	309127	rs1059091	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11p15.5		rs1059091-A	0.68	5E-29				Affymetrix [10369434] (imputed)	N
587	chr11	309126	309127	rs1059091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM2	rs1059091-G	0.320745	1E-36		0.030822506	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	309126	309127	rs1059091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.5	IFITM2	rs1059091-G	0.320736	3E-63		0.04027946	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	309126	309127	rs1059091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs1059091-G	0.397656	1E-56				Affymetrix, Illumina [19872809] (imputed)	N
587	chr11	309126	309127	rs1059091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p15.5	NR	rs1059091-G	0.321344	3E-56		0.033841	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
587	chr11	309126	309127	rs1059091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.5		rs1059091-?	NR	3E-52				NR [~ 8900000] (imputed)	N
587	chr11	309507	309508	rs741738	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11p15.5	IFITM2	rs741738-A	0.189	5E-40		0.06144179	[0.052-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	313754	313755	rs11246062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.5		rs11246062-?	NR	3E-8				NR [~ 8900000] (imputed)	N
587	chr11	320393	320394	rs6421983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.5		rs6421983-T	NR	2E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
587	chr11	320393	320394	rs6421983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs6421983-T	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	321137	321138	rs35218683	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11p15.5	IFITM3	rs35218683-T	NR	1E-8		1.0792143	NR	Affymetrix, Illumina [8278136] (imputed)	N
587	chr11	322721	322722	rs10794307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.5	RP11-326C3.14	rs10794307-T	0.345318	2E-9		0.015346837	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
587	chr11	325417	325418	rs61876250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	11p15.5		rs61876250-C	0.543815	2E-14		0.0351911	[0.026-0.044] unit decrease	Illumina [13470073] (imputed)	N
587	chr11	325417	325418	rs61876250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	11p15.5	NR	rs61876250-G	0.443712	2E-12		0.03548	[0.026-0.045] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
587	chr11	325799	325800	rs7944917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs7944917-T	NR	1E-15		0.0515	[0.039-0.064] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	325947	325948	rs10794309	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11p15.5		rs10794309-C	0.306	1E-19				Affymetrix [10369434] (imputed)	N
587	chr11	327142	327143	rs28475163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs28475163-A	NR	6E-21		0.0265	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	327142	327143	rs28475163	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11p15.5	IFITM3	rs28475163-A	0.2342	1E-11		0.02860124	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr11	327142	327143	rs28475163	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11p15.5	IFITM3	rs28475163-A	0.2343	6E-13		0.03025668	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	327142	327143	rs28475163	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11p15.5	IFITM3	rs28475163-A	0.2342	2E-13		0.03116118	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr11	327333	327334	rs11246068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.5	IFITM3	rs11246068-T	0.228904	9E-45		0.037627403	[0.032-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	327333	327334	rs11246068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.5	IFITM3	rs11246068-T	0.228901	2E-37		0.034111883	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr11	332856	332857	rs7937786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11p15.5		rs7937786-?	NR	5E-8				NR [~ 8900000] (imputed)	N
587	chr11	336137	336138	rs7481076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs7481076-G	NR	3E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr11	350916	350917	rs11246108	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs11246108-A	NR	4E-11		0.0174	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	358068	358069	rs7396957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.5	NR	rs7396957-G	NR	8E-32		0.0442	[0.037-0.052] unit increase	Affymetrix [9000000] (imputed)	N
587	chr11	380241	380242	rs111471551	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11p15.5		rs111471551-?	NR	8E-10		0.0342	unit decrease	NR [NR]	N
587	chr11	380314	380315	rs117291242	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.5	B4GALNT4	rs117291242-C	0.963465	1E-8		0.0300381	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
588	chr11	403980	403981	rs202227463	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	11p15.5	PKP3	rs202227463-A	0.027	3E-16				Illumina [239042]	N
588	chr11	405196	405197	rs7945319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p15.5	PKP3, SIGIRR	rs7945319-A	0.553235	3E-12		0.015499528	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
588	chr11	408173	408174	rs117739035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.5	SIGIRR	rs117739035-G	0.964198	6E-9		0.0306976	[0.02-0.041] unit increase	Affymetrix [NR] (imputed)	N
588	chr11	419993	419994	rs12418575	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11p15.5	ANO9	rs12418575-C	0.1915	3E-8				Affymetrix, Illumina [NR] (imputed)	N
588	chr11	436460	436461	rs11246159	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	11p15.5	ANO9	rs11246159-?		6E-6		1.47	[1.24-1.75]	Illumina [540021]	N
588	chr11	442472	442472	rs11410354	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	NR	rs11410354-CT	0.8001	2E-6	(EA)	0.039	[0.023-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
588	chr11	467338	467339	rs7935013	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11p15.5	NR	rs7935013-?	NR	2E-7	(MMP-2)	0.09	[0.051-0.129] unit increase	Illumina [4020654] (imputed)	N
588	chr11	470330	470331	rs2613996	34781942	Zhang Z	2021-11-16	BMC Med	IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.	CD4+ T cell-associated HIV-1 RNA-to-DNA ratio in long-term suppressive antiretroviral treated HIV-1	207 Dutch ancestry individuals	NA	11p15.5		rs2613996-A	NR	2E-7		0.284	unit decrease	Illumina [4307246] (imputed)	N
588	chr11	470330	470331	rs2613996	34781942	Zhang Z	2021-11-16	BMC Med	IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.	CD4+ T cell-associated HIV-1 DNA levels in long-term suppressive antiretroviral treated HIV-1 (adjusted for cell-associated HIV-1 RNA)	207 Dutch ancestry individuals	NA	11p15.5		rs2613996-A	NR	1E-9		0.18	unit increase	Illumina [4307246] (imputed)	N
588	chr11	484688	484691	rs35275997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p15.5	PTDSS2	rs35275997-G	0.126665	5E-14		0.026173813	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr11	492676	492677	rs34690033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.5	PTDSS2, RNH1	rs34690033-C	0.144444	5E-10		0.019842718	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr11	492676	492677	rs34690033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.5	PTDSS2, RNH1	rs34690033-C	0.144445	7E-11		0.02082271	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr11	494661	494662	rs10540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.5	RNH1	rs10540-G	0.873	8E-6	(EA, men)	0.028	[0.016-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
588	chr11	494661	494662	rs10540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.5	RNH1	rs10540-G	0.872	5E-6		0.021	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
588	chr11	494661	494662	rs10540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.5	RNH1	rs10540-G	0.871	3E-6	(EA)	0.022	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
588	chr11	500247	500248	rs7113204	34781942	Zhang Z	2021-11-16	BMC Med	IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.	CD4+ T cell-associated HIV-1 RNA-to-DNA ratio in long-term suppressive antiretroviral treated HIV-1	207 Dutch ancestry individuals	NA	11p15.5		rs7113204-G	NR	2E-7		0.199	unit decrease	Illumina [4307246] (imputed)	N
588	chr11	512804	512805	rs143321615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.5		rs143321615-?	NR	2E-8				NR [~ 8900000] (imputed)	N
589	chr11	566935	566936	rs12802200	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	11p15.5	IRF7, LRRC56, LMNTD2, RASSF7, MIR210HG, PHRF1, CDHR5	rs12802200-C		9E-10		1.23	[1.15-1.31]	Illumina [644674]	N
589	chr11	567629	567630	rs7935908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p15.5		rs7935908-A	NR	1E-8		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
589	chr11	577533	577534	rs7936397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11p15.5		rs7936397-?	NR	1E-9				NR [~ 8900000] (imputed)	N
589	chr11	589391	589392	rs113626448	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p15.5	PHRF1	rs113626448-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
589	chr11	589563	589564	rs4963128	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	11p15.5	KIAA1542	rs4963128-?	0.66	4E-6	(anti-dsDNA +)	1.33	[1.18-1.49]	Illumina [421318] (imputed)	N
589	chr11	589563	589564	rs4963128	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	11p15.5	PHRF1	rs4963128-C	0.67	5E-9		1.2	[1.13-1.27]	Illumina [~ 2100000] (imputed)	N
589	chr11	589563	589564	rs4963128	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	11p15.5	KIAA1542	rs4963128-?	0.34	3E-10		1.28	[1.18-1.37]	Illumina [317501]	N
589	chr11	601784	601785	rs2396545	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	11p15.5	IRF7	rs2396545-?	NR	8E-6	(ACA)	1.19	[NR]	Illumina [NR]	N
589	chr11	609887	609888	rs12421158	25014791	Govind N	2014-08-14	Mol Med	Immunochip identifies novel, and replicates known, genetic risk loci for rheumatoid arthritis in black South Africans.	Rheumatoid arthritis	263 South African Black cases and 374 South African Black controls	NA	11p15.5	KIAA1542	rs12421158-A	0.34	4E-6		1.72	[1.36-2.16]	Illumina [103770]	N
589	chr11	613207	613208	rs1131665	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11p15.5	IRF7	rs1131665-?	NR	9E-21		1.1904762	[1.15-1.23]	Illumina [at least 5000000] (imputed)	N
589	chr11	614317	614318	rs1061502	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	11p15.5	IRF7	rs1061502-?	0.273	9E-11	(EA)	1.23	[NR]	NR [6344733] (imputed)	N
589	chr11	617227	617228	rs112006329	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	11p15.5	IRF7	rs112006329-?	NR	1E-16		1.2345679	[1.18-1.3]	Illumina [at least 5000000] (imputed)	N
589	chr11	617377	617378	rs61877856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	11p15.5		rs61877856-T	NR	1E-8		0.0658	[0.043-0.088] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
589	chr11	618171	618172	rs6598008	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	11p15.5	CDHR5, IRF7	rs6598008-?	0.56	2E-8		1.25		Illumina [4723365]	N
589	chr11	625084	625085	rs58688157	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	11p15.5	IRF7	rs58688157-A		5E-13		1.24	[NR]	Illumina [> 644674] (imputed)	N
589	chr11	633688	633689	rs7929541	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	11p15.5	SCT-DRD4	rs7929541-?	NR	2E-10		1.1235955	[1.05-1.2]	Illumina [6450125] (imputed)	N
589	chr11	641990	641991	rs11604855	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.5	NR	rs11604855-?	NR	9E-10				Affymetrix [NR]	N
589	chr11	646986	646988	rs58523027	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	11p15.5		rs58523027-TAA	NR	4E-8		0.123465	[0.079-0.168] unit decrease	NR [5054572] (imputed)	N
589	chr11	650993	650994	rs12366210	34781942	Zhang Z	2021-11-16	BMC Med	IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.	CD4+ T cell-associated HIV-1 RNA-to-DNA ratio in long-term suppressive antiretroviral treated HIV-1	207 Dutch ancestry individuals	NA	11p15.5		rs12366210-G	NR	3E-7		0.165	unit decrease	Illumina [4307246] (imputed)	N
590	chr11	705296	705297	rs28364668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs28364668-?	NR	2E-11				NR [~ 8900000] (imputed)	N
590	chr11	732353	732354	rs150046733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.5	NR	rs150046733-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
590	chr11	758445	758446	rs10902219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p15.5		rs10902219-A	NR	1E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
590	chr11	762790	762791	rs4963124	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	11p15.5	TALDO1	rs4963124-C	0.71	9E-6		1.71	[1.34-2.18]	Illumina [~ 10500000] (imputed)	N
590	chr11	772700	772701	rs12223324	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	11p15.5	SLC25A22	rs12223324-?	NR	7E-7		1.2345679	[1.14-1.33]	Illumina [8680745] (imputed)	N
590	chr11	778856	778857	rs61876729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs61876729-G	NR	2E-8		0.0271909	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
590	chr11	778856	778857	rs61876729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs61876729-G	NR	2E-8		0.0274077	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
590	chr11	778856	778857	rs61876729	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p15.5	NR	rs61876729-A	0.906038	6E-10		0.020453	[0.014-0.027] unit increase	Affymetrix [15000001]	N
590	chr11	778856	778857	rs61876729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.5	NR	rs61876729-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
590	chr11	778856	778857	rs61876729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs61876729-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
590	chr11	780321	780321	rs10678686	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	11p15.5	NR	rs10678686-CTG		5E-8		0.103	[NR] unit decrease	Illumina [NR]	N
590	chr11	780826	780827	rs4963156	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.5	AP006621.5	rs4963156-T	NR	3E-8		0.0173442	[0.011-0.023] unit decrease	Affymetrix [127266] (imputed)	N
590	chr11	780826	780827	rs4963156	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p15.5	LOC171391	rs4963156-C	0.539	4E-23		0.1404	[0.11-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
590	chr11	783125	783126	rs78797428	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.5	LOC100506518	rs78797428-?		9E-8				Illumina [4322238] (imputed)	N
590	chr11	784774	784775	rs7107271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs7107271-G	NR	5E-8		0.0156006	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
590	chr11	784774	784775	rs7107271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs7107271-G	NR	2E-8		0.0160674	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
590	chr11	784774	784775	rs7107271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs7107271-G	NR	3E-8		0.0160404	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
590	chr11	784774	784775	rs7107271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11p15.5	AP006621.5	rs7107271-G	NR	5E-9		0.01691	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
591	chr11	791461	791462	rs4963153	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	11p15.5		rs4963153-G	0.525164	2E-24		0.0929338	[0.075-0.111] increase	Affymetrix [11014269] (imputed)	N
591	chr11	791461	791462	rs4963153	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p15.5	SLC25A22	rs4963153-G	0.5282	2E-24		0.1451	[0.12-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
591	chr11	800485	800486	rs7117921	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	11p15.5	CEND1, TALDO1, EPS8L2, PDDC1, PIDD,  PNPLA2, RPLP2, SLC25A22	rs7117921-T	NR	1E-26		0.265	[0.22-0.31] unit increase	Affymetrix [7701190] (imputed)	N
591	chr11	801643	801644	rs113521642	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.5	NR	rs113521642-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
591	chr11	803016	803017	rs6597981	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11p15.5		rs6597981-A	NR	3E-12		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
591	chr11	803016	803017	rs6597981	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	PIDD1	rs6597981-G	0.52	1E-12	(EA)	1.0416667	[1.03-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
591	chr11	817785	817786	rs10902223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	11p15.5	PNPLA2	rs10902223-C	NR	7E-9		0.0180664	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
591	chr11	817785	817786	rs10902223	31855235	McComish BJ	2019-12-19	JAMA Ophthalmol	Association of Genetic Variation With Keratoconus.	Keratoconus	522 European ancestry cases, 655 European ancestry controls	818 European ancestry cases, 3,858 European ancestry controls	11p15.5	PNPLA2	rs10902223	NR	5E-11		6.559	[NR] z score decrease	Illumina [6252612] (imputed)	N
591	chr11	817785	817786	rs10902223	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p15.5	RPLP2	rs10902223-C	0.439	1E-9		0.079	[0.054-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
591	chr11	819463	819464	rs7928917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p15.5	PNPLA2	rs7928917-T	NR	2E-9		0.0189324	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
591	chr11	819463	819464	rs7928917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.5	PNPLA2	rs7928917-T	NR	1E-9		0.0193571	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
591	chr11	819463	819464	rs7928917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.5	PNPLA2	rs7928917-T	NR	2E-8		0.0177431	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
591	chr11	820753	820754	rs61876744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.5	NR	rs61876744-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
591	chr11	820753	820754	rs61876744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs61876744-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
591	chr11	820753	820754	rs61876744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.5	NR	rs61876744-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
591	chr11	822621	822622	rs7942159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs7942159-A	NR	4E-9		0.0170547	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
591	chr11	822621	822622	rs7942159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs7942159-A	NR	2E-9		0.0173158	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
591	chr11	822621	822622	rs7942159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs7942159-A	NR	3E-8		0.0161898	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs140201358-G	NR	5E-17		0.100429	[0.077-0.124] unit increase	Affymetrix [319769] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs140201358-G	NR	7E-17		0.100072	[0.077-0.124] unit increase	Affymetrix [319769] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.5	PNPLA2	rs140201358-G	NR	3E-8		0.0735908	[0.047-0.1] unit increase	Affymetrix [127266] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs140201358-G	NR	6E-9		0.0724052	[0.048-0.097] unit decrease	Affymetrix [321788] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs140201358-G	NR	9E-9		0.0689152	[0.045-0.092] unit decrease	Affymetrix [321016] (imputed)	N
591	chr11	823585	823586	rs140201358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11p15.5	PNPLA2	rs140201358-G	NR	4E-9		0.071108	[0.047-0.095] unit increase	Affymetrix [321169] (imputed)	N
591	chr11	823585	823586	rs140201358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.5	PNPLA2	rs140201358-C	0.986274	2E-12		0.0578616	[0.042-0.074] unit increase	Affymetrix [NR] (imputed)	N
591	chr11	823585	823586	rs140201358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.5	NR	rs140201358-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
591	chr11	823585	823586	rs140201358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs140201358-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
591	chr11	823585	823586	rs140201358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.5		rs140201358-?	NR	6E-25				NR [~ 8900000] (imputed)	N
591	chr11	823585	823586	rs140201358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11p15.5	NR	rs140201358-C	0.9868	1E-22		0.0848	[0.068-0.102] unit decrease	NR [~ 27400000] (imputed)	N
591	chr11	823585	823586	rs140201358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p15.5	NA	rs140201358-C	0.9868	8E-11		0.0557	[0.039-0.073] unit decrease	NR [~ 27400000] (imputed)	N
591	chr11	823585	823586	rs140201358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11p15.5	NR	rs140201358-C	0.9868	8E-11		0.0557	[0.039-0.073] unit decrease	NR [~ 27400000] (imputed)	N
591	chr11	824292	824293	rs114512805	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	11p15.5	NR	rs114512805-?	NR	5E-6		15.16	NR unit increase	Affymetrix [at least 600000] (imputed)	N
591	chr11	825109	825110	rs1138714	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p15.5	PNPLA2	rs1138714-A	0.453805	9E-7	(males)	0.01029	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
591	chr11	825109	825110	rs1138714	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p15.5	PNPLA2	rs1138714-A	0.453805	7E-11		0.01242	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
591	chr11	825109	825110	rs1138714	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p15.5	PNPLA2	rs1138714-A	0.453805	2E-7	(females)	0.01402	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
591	chr11	828915	828916	rs7126805	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p15.5	CRACR2B	rs7126805-A	0.7139	1E-7		0.0113	[0.0072-0.0154] unit increase	Illumina [246328]	N
591	chr11	829538	829539	rs28558789	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs28558789-A	0.289021	4E-8		0.0582197	[0.038-0.078] increase	Affymetrix [11014269] (imputed)	N
591	chr11	831817	831818	rs34391416	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	11p15.5	EFCAB4A, CHID1, AP2A2	rs34391416-A	0.05	5E-8	(EA)	1.93	[1.53-2.45]	Illumina [NR] (imputed)	N
591	chr11	831817	831818	rs34391416	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	11p15.5	EFCAB4A	rs34391416-?	0.05	3E-7		1.85	[1.46-2.34]	Illumina [NR] (imputed)	N
591	chr11	831882	831883	rs35694355	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.5	EFCAB4A	rs35694355-A	0.0050	3E-6	(Head circumference )	0.03	[NR] cm increase	Illumina [899892]	N
591	chr11	834388	834389	rs72847212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.5	CD151	rs72847212-C	0.203445	5E-10		0.017420929	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr11	837083	837084	rs34956804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	CD151	rs34956804-A	0.248538	1E-27		0.02839919	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
591	chr11	838721	838722	rs6762	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.5	CD151	rs6762-C	0.2502	8E-9		0.02411371	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr11	841283	841284	rs35702851	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.5	POLR2L	rs35702851-C	0.1982	2E-8		0.1798	[0.12-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
591	chr11	843096	843097	rs10902226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p15.5		rs10902226-C	NR	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
591	chr11	843460	843461	rs11246328	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.5	NR	rs11246328-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
591	chr11	855371	855372	rs28672671	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	11p15.5	TSPAN4	rs28672671-A	0.03	2E-7		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
591	chr11	855723	855724	rs73403190	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	11p15.5	NR	rs73403190-?	NR	8E-8		0.6451	[0.41-0.88] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
591	chr11	871029	871030	rs138429802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.5		rs138429802-A	NR	2E-8		0.0219	[0.014-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
591	chr11	881638	881639	rs7103389	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p15.5	CHID1	rs7103389-T	0.382148	3E-11		0.00946008	[0.0067-0.0122] unit decrease	Affymetrix [12370749]	N
591	chr11	892088	892089	rs7952102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.5		rs7952102-?	NR	6E-13				NR [~ 8900000] (imputed)	N
591	chr11	915763	915764	rs7107977	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	11p15.5		rs7107977-A	0.6	6E-6		0.29	[0.16-0.42] unit increase	Affymetrix, Illumina [6444471] (imputed)	N
592	chr11	924903	924904	rs10794342	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	11p15.5	AP2A2	rs10794342-?	NR	4E-6		1.2132727		Affymetrix, Illumina [2928658] (imputed)	N
592	chr11	941940	941941	rs10751667	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11p15.5	AP2A2	rs10751667-T	0.634	6E-7		1.0753	[1.04-1.1]	Illumina [7055881] (imputed)	N
592	chr11	983583	983584	rs369708413	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	11p15.5	AP2A2, MUC6	rs369708413-C	0.017	7E-8		1.62	[1.03-2.21] unit increase	Illumina [9469131] (imputed)	N
592	chr11	983583	983584	rs369708413	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	11p15.5	AP2A2, MUC6	rs369708413-C	0.016974	3E-7		0.340181	[0.21-0.47] unit increase	Illumina [9469131] (imputed)	N
592	chr11	993744	993745	rs7104956	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	11p15.5	AP2A2	rs7104956-?	NR	2E-7		0.269	[0.17-0.37] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr11	1016868	1016869	rs35469308	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p15.5	MUC6	rs35469308-A	0.8397	4E-9		0.5771	[0.38-0.77] unit decrease	Affymetrix [8590397] (imputed)	N
592	chr11	1018373	1018374	rs7396383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11p15.5		rs7396383-A	NR	4E-11		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
592	chr11	1029904	1029905	rs78459074	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	11p15.5	NR	rs78459074-A	0.89	3E-10		1.12	NR	NR [8546065] (imputed)	N
593	chr11	1093944	1093945	rs7934606	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	11p15.5	MUC2	rs7934606-T	0.42	7E-34		1.52	[1.40-1.65]	Illumina [439828]	N
593	chr11	1110394	1110395	rs35225972	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11p15.5	MUC2, MUC5AC	rs35225972-A	0.682812183592115	4E-10		0.043813545	[0.03-0.058] unit increase	Affymetrix [35186738] (imputed)	N
593	chr11	1111163	1111164	rs11245962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.5		rs11245962-T	0.680953	4E-10		0.014834465	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
593	chr11	1111163	1111164	rs11245962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.5		rs11245962-T	0.680931	1E-10		0.015347455	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
593	chr11	1113132	1113133	rs10902094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11p15.5		rs10902094-?	NR	4E-10				NR [~ 8900000] (imputed)	N
593	chr11	1119568	1119582	rs567113841	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	11p15.5		rs567113841-?	NR	7E-6		0.3188053	[0.18-0.46] unit decrease	Illumina [9875426] (imputed)	N
593	chr11	1123738	1123739	rs12788104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	11p15.5		rs12788104-G	NR	3E-10		0.0616	[0.042-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
593	chr11	1123738	1123739	rs12788104	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11p15.5	MUC2	rs12788104-G	0.68	2E-18				NR [> 9500000] (imputed)	N
593	chr11	1123738	1123739	rs12788104	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11p15.5	MUC2	rs12788104-G	0.676335	3E-15		1.0523579	[1.03908971790108-1.06579557171157]	NR [9572556] (imputed)	N
593	chr11	1123738	1123739	rs12788104	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11p15.5	MUC2, MUC5AC, LOC101927503, MUC6, MUC5B, AP2A2	rs12788104-G	0.68738	2E-10		1.04498	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
593	chr11	1123738	1123739	rs12788104	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11p15.5	MUC2	rs12788104-A	0.3122	1E-9				Affymetrix [15688218] (imputed)	N
593	chr11	1123738	1123739	rs12788104	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	11p15.5	MUC6, MUC5AC	rs12788104-G	0.688	1E-8		1.064	[1.041-1.087]	Affymetrix [10894596] (imputed)	N
593	chr11	1123738	1123739	rs12788104	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	11p15.5	MUC2	rs12788104-A	0.310163	3E-10		0.061598003	[0.042-0.081] unit decrease	Affymetrix [7288503] (imputed)	N
593	chr11	1130567	1130568	rs11245976	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	11p15.5	NR	rs11245976-A	0.22	7E-6	(model 1)	0.4	[0.22-0.58] unit increase	Illumina [2100000] (imputed)	N
593	chr11	1136477	1136478	rs11603634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.5		rs11603634-?	NR	2E-9				NR [~ 8900000] (imputed)	N
593	chr11	1136477	1136478	rs11603634	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	11p15.5	MUC5AC	rs11603634-G	0.5036	2E-8		1.09	[1.06-1.12]	Affymetrix [33771858] (imputed)	N
593	chr11	1145843	1145844	rs28415845	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	11p15.5	MUC2, MUC5B	rs28415845-C	0.701	3E-12		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
593	chr11	1145843	1145844	rs28415845	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11p15.5	MUC2, MUC5B	rs28415845-C	NR	4E-12		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
594	chr11	1215055	1215056	rs2075842	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GKN2	5,367 Icelandic ancestry individuals	NA	11p15.5		rs2075842-C	0.3796	2E-19		0.17559	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
594	chr11	1224686	1224687	rs28729516	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	11p15.5	NR	rs28729516-?	NR	9E-7		0.0487	[0.029-0.068] unit increase	Illumina [at least 560000] (imputed)	N
594	chr11	1241220	1241221	rs35705950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPB	5,367 Icelandic ancestry individuals	NA	11p15.5		rs35705950-T	0.117	4E-19		0.264549	[0.21-0.32] unit increase	Illumina [7506463] (imputed)	N
594	chr11	1241220	1241221	rs35705950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	11p15.5		rs35705950-T	NR	2E-65		1.1206	[0.99-1.25] unit increase	Affymetrix, Illumina [25843031] (imputed)	N
594	chr11	1241220	1241221	rs35705950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	11p15.5		rs35705950-T	NR	1E-76		1.0072	[0.9-1.11] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
594	chr11	1241220	1241221	rs35705950	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	11p15.5	MUC5B	rs35705950-T	0.149	1E-203		4.84	[4.37-5.36]	Affymetrix, Illumina [10790934] (imputed)	N
594	chr11	1241220	1241221	rs35705950	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	11p15.5	MUC5B	rs35705950-T	0.11	5E-29	(EA)	2.23	[1.94-2.57]	Affymetrix, Illumina [at least 412049] (imputed)	N
594	chr11	1241220	1241221	rs35705950	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	11p15.5	MUC5B	rs35705950-T	0.11	2E-29		2.22	[1.93-2.55]	Affymetrix, Illumina [at least 412049] (imputed)	N
594	chr11	1241220	1241221	rs35705950	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	11p15.5	MUC5B	rs35705950-T	0.112	4E-27	(EA)	1.98	[1.75-2.24]	Affymetrix, Illumina [at least 412049] (imputed)	N
594	chr11	1241220	1241221	rs35705950	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	11p15.5	MUC5B	rs35705950-T	0.11	3E-27		1.97	[1.74-2.22]	Affymetrix, Illumina [at least 412049] (imputed)	N
594	chr11	1241220	1241221	rs35705950	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	11p15.5	MUC5B	rs35705950-T	0.143	1E-66		2.89	[2.56-3.26]	Affymetrix [NR] (imputed)	N
594	chr11	1241220	1241221	rs35705950	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	11p15.5	MUC5AC, TOLLIP, MUC5B	rs35705950-T	0.14	2E-50		2.43	[2.13-2.77]	Affymetrix [10601812] (imputed)	N
594	chr11	1248086	1248087	rs56293203	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	11p15.5	MUC5B	rs56293203-?	NR	2E-9				Illumina [83898]	N
594	chr11	1248959	1248960	rs2075855	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	11p15.5	MUC5B	rs2075855-A	0.08	1E-6		0.14	[0.081-0.199] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
594	chr11	1281884	1281885	rs113740363	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	11p15.5	MUC5B	rs113740363-G	0.0	8E-17				Illumina [239042]	N
595	chr11	1324771	1324772	rs5743894	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	11p15.5	TOLLIP, BRSK2, MUC5B	rs5743894-G	0.18	1E-12		1.49	[1.33-1.68]	Affymetrix [10601812] (imputed)	N
595	chr11	1325828	1325829	rs5743890	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	11p15.5	TOLLIP, BRSK2, MUC5B	rs5743890-A	0.83	3E-11		1.64	[1.41-1.92]	Affymetrix [10601812] (imputed)	N
595	chr11	1341814	1341815	rs11022147	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	11p15.5	NR	rs11022147-G	0.93	6E-6	(EA)	0.25	[0.14-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
595	chr11	1357871	1357871	rs199527622	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11p15.5	NR	rs199527622-?	NR	7E-6		0.1084	[0.061-0.155] unit increase	Illumina [at least 560000] (imputed)	N
595	chr11	1371229	1371230	rs7116562	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	11p15.5	TOLLIP, AS1, BRSK2	rs7116562-C	0.52	4E-7		1.19	[1.11-1.27]	Illumina [7206774] (imputed)	N
595	chr11	1402079	1402080	rs35859077	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-877 sp000433455 abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.5		rs35859077-A	0.0967191	3E-8		0.108186	[0.07-0.146] unit increase	Illumina [7980478] (imputed)	N
595	chr11	1402079	1402080	rs35859077	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-877 abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.5		rs35859077-A	0.0967191	7E-9		0.125129	[0.083-0.168] unit increase	Illumina [7980478] (imputed)	N
595	chr11	1417601	1417602	rs574686237	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	11p15.5	NR	rs574686237-A	0.001	2E-12	(Unifrac metric)	6.9600406	NR z-score increase	Illumina [5293637] (imputed)	N
595	chr11	1425604	1425605	rs1881509	27936112	Kalsi G	2016-12-09	PLoS One	Genome-Wide Association of Heroin Dependence in Han Chinese.	Heroin dependence	370 Han Chinese ancestry cases, 134 Han Chinese ancestry controls		11p15.5	BRSK2	rs1881509-?	0.5908	4E-6		2.02		Illumina [4009606] (imputed)	N
596	chr11	1473207	1473208	rs60707923	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11p15.5	Intergenic	rs60707923-G	0.7501	1E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
596	chr11	1477116	1477117	rs73411413	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	11p15.5	NR	rs73411413-?	NR	4E-6		0.1276	[0.073-0.182] unit decrease	Illumina [at least 560000] (imputed)	N
596	chr11	1478564	1478565	rs7947308	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.5		rs7947308-T	0.19	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
596	chr11	1478564	1478565	rs7947308	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.5	NR	rs7947308-T	0.1835	5E-11				NR [9056863] (imputed)	N
596	chr11	1483117	1483117	rs4046908	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.5	NR	rs4046908-?	NR	2E-10	(white matter)			NR [9227495] (imputed)	N
596	chr11	1483176	1483177	rs1881505	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.5	NR	rs1881505-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
596	chr11	1483176	1483177	rs1881505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.5		rs1881505-?	NR	8E-9				NR [~ 8900000] (imputed)	N
596	chr11	1483542	1483543	rs9795439	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.5		rs9795439-A	0.19	3E-14		7.61	z score increase	Affymetrix [9061022] (imputed)	N
596	chr11	1483542	1483543	rs9795439	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p15.5	NR	rs9795439-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
596	chr11	1483542	1483543	rs9795439	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p15.5		rs9795439-A	0.1963	7E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
596	chr11	1488142	1488143	rs10835060	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p15.5	BRSK2, MOB2, DUSP8, KRTAP5-1	rs10835060-?		2E-11				NR [7428630] (imputed)	N
596	chr11	1488142	1488143	rs10835060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.5		rs10835060-?	NR	1E-9				NR [~ 8900000] (imputed)	N
596	chr11	1494774	1494775	rs11029977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs11029977-?	NR	4E-9				NR [~ 8900000] (imputed)	N
596	chr11	1507511	1507512	rs1881502	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11p15.5	NR	rs1881502-T	NR	8E-9		1.053	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
596	chr11	1507511	1507512	rs1881502	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11p15.5	MOB2	rs1881502-T	0.19	7E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
596	chr11	1524505	1524506	rs61867538	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	11p15.5	NR	rs61867538-C		4E-6		0.3566	[0.2-0.51] SD units decrease	NR [10700000] (imputed)	N
596	chr11	1555243	1555244	rs6578492	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	11p15.5	intergenic, DUSP8	rs6578492-A	0.5794	4E-6		0.4361	[0.25-0.62] unit increase	Illumina [at least 4683137] (imputed)	N
597	chr11	1575067	1575068	rs7951820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	11p15.5		rs7951820-C	NR	2E-9		0.0788	[0.053-0.104] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
597	chr11	1603071	1603072	rs143076357	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11p15.5	DUSP8	rs143076357-A	0.115195977079886	7E-6		0.0037959	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
597	chr11	1615860	1615861	rs11035295	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11p15.5	ADAMTS3	rs11035295-?		9E-10				NR [7428630] (imputed)	N
597	chr11	1622011	1622012	rs28880374	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.5	NR	rs28880374-?	NR	5E-8	(white matter)			NR [9227495] (imputed)	N
597	chr11	1628991	1628992	rs60210378	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	11p15.5		rs60210378-A	0.54	3E-24		0.084	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
597	chr11	1644439	1644440	rs12419284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs12419284-T	NR	2E-9		0.027	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
597	chr11	1656942	1656943	rs117542855	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	11p15.5	intergenic	rs117542855-T	0.0435052	2E-7		1.9366	[1.50758-2.48771]	NR [7263501] (imputed)	N
597	chr11	1680663	1680664	rs1964600	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	11p15.5	MOB2	rs1964600-A	0.247629	3E-8		1.07	[1.05-1.10]	NR [10903881] (imputed)	N
597	chr11	1686789	1686790	rs75723867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSD	5,357 Icelandic ancestry individuals	NA	11p15.5		rs75723867-A	0.305	2E-18		0.172538	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
597	chr11	1686999	1687001	rs201811265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.5	FAM99A	rs201811265-C	0.218808	2E-9		0.016874745	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr11	1689408	1689409	rs34295474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.5	AP006285.7	rs34295474-A	0.168479	5E-10		0.018598562	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr11	1689408	1689409	rs34295474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.5	AP006285.7	rs34295474-A	0.168496	1E-12		0.021311887	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr11	1689408	1689409	rs34295474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.5		rs34295474-?	NR	2E-10				NR [~ 8900000] (imputed)	N
597	chr11	1690790	1690791	rs12802112	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	11p15.5		rs12802112-A	0.7	1E-95		0.1978	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
597	chr11	1702116	1702117	rs79889784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.5		rs79889784-?	NR	2E-11				NR [~ 8900000] (imputed)	N
598	chr11	1704595	1704596	rs12802972	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	INS, IGF2	rs12802972-A	0.4281	2E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
598	chr11	1715331	1715332	rs7130416	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11p15.5	IFITM10	rs7130416-C	0.438536638848672	3E-6		0.0025266	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
598	chr11	1720180	1720181	rs12421148	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.5	NR	rs12421148-?	NR	4E-8	(X3rd ventricle)			NR [9227495] (imputed)	N
598	chr11	1744092	1744093	rs10839545	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p15.5	MOB2	rs10839545-?		4E-13				Affymetrix, Illumina [NR] (imputed)	N
598	chr11	1751985	1751986	rs17834326	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Cathepsin D plasma levels	400 French ancestry individuals	NA	11p15.5		rs17834326-G	NR	8E-6		0.118	[0.061-0.175] ng/mL decrease	Illumina [5201092] (imputed)	N
598	chr11	1755970	1755971	rs2292959	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	11p15.5		rs2292959-A	0.83	3E-43		0.1418	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
598	chr11	1770223	1770224	rs111693235	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11p15.5	CTSD	rs111693235-G	0.71	1E-41		0.35	unit increase	Illumina [5270624] (imputed)	N
598	chr11	1771214	1771215	rs148410317	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	11p15.5	IFITM10, FAM99A, FAM99B, KRTAP5-6, CTSD, RPL36AP39, SYT8, TNNI2	rs148410317-C	0.01	2E-7		1.07	[0.68-1.46] unit decrease	Illumina [7992243] (imputed)	N
598	chr11	1777036	1777037	rs72850955	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GALT2	5,365 Icelandic ancestry individuals	NA	11p15.5		rs72850955-C	0.09318	7E-22		0.31177	[0.25-0.38] unit decrease	Illumina [7506463] (imputed)	N
598	chr11	1780204	1780205	rs11555039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p15.5		rs11555039-G	NR	6E-14		0.0296	[0.022-0.037] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
598	chr11	1780204	1780205	rs11555039	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p15.5	CTSD	rs11555039-G	0.086	9E-13		7.14	z-score increase	Affymetrix [4314223] (imputed)	N
598	chr11	1783756	1783757	rs55861089	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSD	5,357 Icelandic ancestry individuals	NA	11p15.5		rs55861089-G	0.1091	3E-46		0.413101	[0.36-0.47] unit decrease	Illumina [7506463] (imputed)	N
598	chr11	1783756	1783757	rs55861089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p15.5	NR	rs55861089-G	NR	8E-11		0.0254	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
598	chr11	1783756	1783757	rs55861089	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	11p15.5		rs55861089-A	0.91	7E-224		0.4371	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
598	chr11	1783756	1783757	rs55861089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.5	CTSD	rs55861089-A	0.888125	8E-26	(CTSD, 5508_62_3)	0.41390166	[0.34-0.49] unit increase	Illumina [> 1000000] (imputed)	N
599	chr11	1840953	1840954	rs7481661	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.5	NR	rs7481661-?	NR	1E-6				Affymetrix [NR]	N
599	chr11	1874071	1874072	rs907611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p15.5		rs907611-A	NR	2E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
599	chr11	1874071	1874072	rs907611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs907611-A	0.30081	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
599	chr11	1874071	1874072	rs907611	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11p15.5	LSP1	rs907611-?		1E-7				Illumina [9578670] (imputed)	N
599	chr11	1874071	1874072	rs907611	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	11p15.5	LSP1	rs907611-?		1E-6				Illumina [9725440] (imputed)	N
599	chr11	1874071	1874072	rs907611	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11p15.5	FLJ78302, LTF, CCR1, CCR2, CCR3, CCR5	rs907611-A	0.3211	1E-8	(EA)	1.0787733	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
599	chr11	1874071	1874072	rs907611	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11p15.5	NR	rs907611-A	0.3211	2E-8	(EA)	1.0621415	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
599	chr11	1874071	1874072	rs907611	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	11p15.5	LSP1	rs907611-A	0.31	4E-8		1.15	[1.09-1.21]	Illumina [462190]	N
599	chr11	1874071	1874072	rs907611	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11p15.5	TNNI2, LSP1	rs907611-A	0.315	3E-10		1.068	[1.035-1.101]	Affymetrix, Illumina [1230000] (imputed)	N
599	chr11	1874071	1874072	rs907611	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11p15.5	LSP1	rs907611-A	0.32	1E-10		1.08	[1.03-1.13]	Affymetrix, Illumina [~ 1100000] (imputed)	N
599	chr11	1874220	1874221	rs907612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11p15.5		rs907612-T	NR	7E-34		0.0263	[0.022-0.031] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
599	chr11	1874220	1874221	rs907612	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	11p15.5		rs907612-C	0.62	4E-24				Affymetrix [10369434] (imputed)	N
599	chr11	1874220	1874221	rs907612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p15.5	LSP1	rs907612-T	0.379735	1E-40		0.030713642	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr11	1874220	1874221	rs907612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.5	LSP1	rs907612-T	0.379662	8E-55		0.035879984	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr11	1874220	1874221	rs907612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs907612-T	0.368054	3E-60				Affymetrix, Illumina [23467995] (imputed)	N
599	chr11	1874220	1874221	rs907612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p15.5	NR	rs907612-T	0.380435	5E-60		0.033053	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
599	chr11	1874220	1874221	rs907612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11p15.5	LSP1	rs907612-T	0.3821	5E-13		0.02670236	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr11	1874220	1874221	rs907612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11p15.5	LSP1	rs907612-T	0.382	5E-16		0.0300791	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr11	1874220	1874221	rs907612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11p15.5	LSP1	rs907612-T	0.382	2E-11		0.02497546	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
599	chr11	1874291	1874292	rs907613	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip thickness 2)	6,169 Latin American individuals	NA	11p15.5		rs907613-?	NR	1E-8				Illumina [8703729] (imputed)	N
599	chr11	1874291	1874292	rs907613	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip thickness 1)	6,169 Latin American individuals	NA	11p15.5		rs907613-?	NR	4E-8				Illumina [8703729] (imputed)	N
599	chr11	1874291	1874292	rs907613	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip thickness 1)	6,169 Latin American individuals	NA	11p15.5		rs907613-?	NR	4E-8				Illumina [8703729] (imputed)	N
599	chr11	1874891	1874892	rs61867141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p15.5	LSP1	rs61867141-A	0.194601	1E-11		0.019196272	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr11	1874891	1874892	rs61867141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p15.5	NR	rs61867141-A	0.194944	1E-11		0.017128	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
599	chr11	1887067	1887068	rs569550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p15.5		rs569550-G	NR	1E-24		0.0197	[0.016-0.023] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
599	chr11	1887067	1887068	rs569550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11p15.5		rs569550-G	NR	1E-16		0.059	[0.045-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr11	1887067	1887068	rs569550	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p15.5	AC051649.12	rs569550-G	0.385649	2E-31		0.09494089	[0.079-0.111] unit increase	Affymetrix [7288503] (imputed)	N
599	chr11	1887067	1887068	rs569550	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11p15.5	AC051649.12	rs569550-G	0.386833	9E-31		0.09569074	[0.079-0.112] unit increase	Affymetrix [7288503] (imputed)	N
599	chr11	1887067	1887068	rs569550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.5		rs569550-?	NR	1E-53				NR [~ 8900000] (imputed)	N
599	chr11	1887067	1887068	rs569550	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.5	LSP1	rs569550-T	0.6064	1E-30		0.3991	[0.33-0.47] mmHg decrease	Affymetrix [NR] (imputed)	N
599	chr11	1887067	1887068	rs569550	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs569550-T	0.23	3E-10	(Japanese)	0.5905	[0.41-0.77] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1887067	1887068	rs569550	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs569550-T	0.2263	8E-11	(Japanese)	0.4305	[0.3-0.56] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1887067	1887068	rs569550	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.5	LSP1	rs569550-T	0.2263	1E-8	(Japanese)	0.0954	[0.062-0.128] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1887067	1887068	rs569550	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs569550-T	0.2263	5E-9	(Japanese)	0.349	[0.23-0.47] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1887067	1887068	rs569550	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	11p15.5	LSP1	rs569550-?	NR	2E-8		0.02693	[0.018-0.036] unit increase	Illumina [6108953] (imputed)	N
599	chr11	1887215	1887216	rs612652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p15.5		rs612652-C	NR	3E-27		0.0221	[0.018-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
599	chr11	1887215	1887216	rs612652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p15.5		rs612652-?	NR	5E-24				NR [~ 8900000] (imputed)	N
599	chr11	1887215	1887216	rs612652	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	LSP1	rs612652-T	0.41	5E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1887805	1887806	rs7938342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.5		rs7938342-A	NR	5E-34		0.0245	[0.021-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
599	chr11	1887805	1887806	rs7938342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p15.5		rs7938342-A	NR	3E-33		0.0637	[0.053-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr11	1887805	1887806	rs7938342	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p15.5	AC051649.12	rs7938342-T	0.415375	5E-28		0.06740537	[0.055-0.079] unit decrease	Affymetrix [7288503] (imputed)	N
599	chr11	1888613	1888614	rs4980379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	11p15.5		rs4980379-T	NR	2E-9		0.0816	[0.055-0.108] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr11	1888613	1888614	rs4980379	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls	NA	11p15.5	LSP1	rs4980379-T	0.365232	7E-9		0.10798397	[0.072-0.144] unit increase	Affymetrix [7288503] (imputed)	N
599	chr11	1890989	1890990	rs592373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p15.5		rs592373-A	NR	3E-18		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
599	chr11	1890989	1890990	rs592373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs592373-?	NR	4E-20				NR [~ 8900000] (imputed)	N
599	chr11	1890989	1890990	rs592373	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.5	LSP1, TNNT3	rs592373-A	0.64	2E-14		0.484	[0.36-0.61] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
599	chr11	1890989	1890990	rs592373	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.5	LSP1, TNNT3	rs592373-A	0.64	4E-13		0.282	[0.21-0.36] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
599	chr11	1891283	1891284	rs688601	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	11p15.5	LSP1	rs688601-?	NA	3E-7		1.67	[1.08-2.26] unit decrease	Affymetrix [5541230] (imputed)	N
599	chr11	1892561	1892562	rs78405116	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Milk allergy	291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	11p15.5	LSP1	rs78405116-?	NR	2E-6				Illumina [6459842] (imputed)	N
599	chr11	1892584	1892585	rs4980389	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	11p15.5		rs4980389-?	NR	4E-7		0.927573	[0.9-0.96]	NR [682398]	N
599	chr11	1892584	1892585	rs4980389	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs4980389-A	0.77	3E-10	(Japanese)	0.5935	[0.41-0.78] unit increase	Illumina [6200000] (imputed)	N
599	chr11	1892584	1892585	rs4980389	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs4980389-A	0.7748	5E-17	(East Asian)	0.4667	[0.36-0.58] unit increase	Illumina [6200000] (imputed)	N
599	chr11	1892584	1892585	rs4980389	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.5	LSP1	rs4980389-A	0.7747	2E-8	(Japanese)	0.0947	[0.062-0.128] unit increase	Illumina [6200000] (imputed)	N
599	chr11	1892584	1892585	rs4980389	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1	rs4980389-A	0.7746	1E-13	(East Asian)	0.3696	[0.27-0.47] unit increase	Illumina [6200000] (imputed)	N
599	chr11	1892584	1892585	rs4980389	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.5	LSP1	rs4980389-A	0.41	7E-40	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1892584	1892585	rs4980389	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11p15.5	LSP1	rs4980389-A	0.41	4E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1892584	1892585	rs4980389	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	LSP1	rs4980389-A	0.41	2E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1892584	1892585	rs4980389	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	11p15.5	LSP1	rs4980389-?	NR	4E-9		0.02846	[0.019-0.038] unit increase novel	Illumina [6108953] (imputed)	N
599	chr11	1892929	1892930	rs562434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p15.5		rs562434-A	NR	6E-28		0.0903	[0.074-0.106] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr11	1892929	1892930	rs562434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11p15.5		rs562434-A	NR	5E-30		0.0955	[0.079-0.112] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr11	1892929	1892930	rs562434	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.5	LSP1	rs562434-A	0.3581	1E-16		0.2148	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
599	chr11	1892929	1892930	rs562434	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.5	LSP1	rs562434-A	0.44	9E-50	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1892929	1892930	rs562434	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11p15.5	LSP1	rs562434-A	0.42	3E-35	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1894162	1894163	rs12418543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	11p15.5		rs12418543-G	0.192082	2E-9		0.0263923	[0.018-0.035] unit decrease	Illumina [13477767] (imputed)	N
599	chr11	1894162	1894163	rs12418543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	11p15.5		rs12418543-G	0.192079	3E-8		0.0247822	[0.016-0.034] unit decrease	Illumina [13477770] (imputed)	N
599	chr11	1895042	1895043	rs112640876	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	LSP1	rs112640876-A	0.65	4E-21	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1895042	1895043	rs112640876	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	LSP1	rs112640876-A	0.64	1E-26	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1895707	1895708	rs4980386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	11p15.5		rs4980386-A	0.759601	5E-9		0.0230802	[0.015-0.031] unit increase	Illumina [13477770] (imputed)	N
599	chr11	1895707	1895708	rs4980386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	11p15.5		rs4980386-A	NR	9E-17		0.0874	[0.067-0.108] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
599	chr11	1896956	1896957	rs588321	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11p15.5	LSP1	rs588321-C	0.4	8E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1896956	1896957	rs588321	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	11p15.5	LSP1	rs588321-?	NR	1E-12		0.03612	[0.026-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
599	chr11	1897835	1897836	rs80005225	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x experiences in childhood (felt loved by family member) interaction	11,465 European ancestry individuals	NA	11p15.5		rs80005225-?	NR	4E-9		1.9789	[1.32-2.64] unit decrease	Affymetrix [NR] (imputed)	N
599	chr11	1898663	1898664	rs1973765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p15.5		rs1973765-C	0.745863468	4E-9		0.056688596	[0.038-0.076] unit increase	Illumina [13134967] (imputed)	N
599	chr11	1898663	1898664	rs1973765	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11p15.5	LSP1	rs1973765-C	0.384178	5E-15		0.06669115	[0.05-0.083] unit increase	Affymetrix [7288503] (imputed)	N
599	chr11	1898663	1898664	rs1973765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	NR	rs1973765-T	0.2555	9E-17	(East Asian)	0.6644	[0.51-0.82] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1898663	1898664	rs1973765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	11p15.5	NR	rs1973765-T	0.2555	2E-8	(East Asian)	0.3083	[0.2-0.41] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1898663	1898664	rs1973765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.5	NR	rs1973765-T	0.2554	4E-16	(East Asian)	0.1157	[0.088-0.144] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1898663	1898664	rs1973765	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	NR	rs1973765-C	0.4001	1E-37	(EA)	0.0817	[0.069-0.094] unit decrease	Illumina [~ 11800000] (imputed)	N
599	chr11	1899961	1899962	rs12360772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p15.5		rs12360772-?	NR	4E-11				NR [~ 8900000] (imputed)	N
599	chr11	1902096	1902097	rs4980383	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	11p15.5	LSP1	rs4980383-?	0.44	3E-6		1.08	[1.05-1.12]	Illumina [10909381] (imputed)	N
599	chr11	1902096	1902097	rs4980383	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	11p15.5	LSP1	rs4980383-?	0.45	9E-9		1.07	[1.03-1.11] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
599	chr11	1905291	1905292	rs661348	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1-TNNT3	rs661348-T	0.44	1E-8	(Japanese)	0.4302	[0.28-0.58] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1905291	1905292	rs661348	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.5	LSP1, TNNT3	rs661348-T	0.438	2E-7	(Japanese)	0.2782	[0.17-0.38] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1905291	1905292	rs661348	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.5	LSP1, TNNT3	rs661348-T	0.438	7E-8	(Japanese)	0.0698	[0.044-0.095] unit decrease	Illumina [6200000] (imputed)	N
599	chr11	1905291	1905292	rs661348	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.5	LSP1, TNNT3	rs661348-?	NR	3E-40				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1905291	1905292	rs661348	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.5	LSP1, TNNT3	rs661348-?		3E-23				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1905291	1905292	rs661348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	LSP1	rs661348-T		2E-15		0.354	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1905291	1905292	rs661348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	LSP1	rs661348-T		9E-9		0.173	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1905291	1905292	rs661348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	LSP1	rs661348-T		2E-10		0.17	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1907608	1907609	rs3781962	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11p15.5	LSP1	rs3781962-C	0.59	3E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1907652	1907653	rs9667035	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	11p15.5	LSP1	rs9667035-T	0.22464516971279375	6E-6	(AA)	0.4227	[0.24-0.61] unit increase	Illumina [at least 988306] (imputed)	N
599	chr11	1909005	1909006	rs3817198	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11p15.5		rs3817198-T	NR	6E-21		0.94	[0.93-0.95]	Affymetrix, Illumina [NR] (imputed)	N
599	chr11	1909005	1909006	rs3817198	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	LSP1	rs3817198-C	0.32	1E-18	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
599	chr11	1909005	1909006	rs3817198	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	11p15.5	NR	rs3817198-C	0.31	1E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
599	chr11	1909005	1909006	rs3817198	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11p15.5	NR	rs3817198-C	0.31	2E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
599	chr11	1909005	1909006	rs3817198	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	11p15.5	LSP1, TNNT3	rs3817198-C	0.66	1E-10		0.14	[0.081-0.199] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
599	chr11	1909005	1909006	rs3817198	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11p15.5	LSP1	rs3817198-C	0.31	2E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
599	chr11	1909005	1909006	rs3817198	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	11p15.5	LSP1	rs3817198-C	0.30	3E-9		1.07	[1.04-1.11]	Perlegen [205586]	N
599	chr11	1914138	1914139	rs576603	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	11p15.5		rs576603-C	NR	2E-8		1.0767	NR	Affymetrix [7846216] (imputed)	N
599	chr11	1914138	1914139	rs576603	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11p15.5	LSP1	rs576603-T	0.47	1E-18	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1919207	1919208	rs61433759	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11p15.5	intergenic	rs61433759-G	0.067	2E-16		0.39	[0.29-0.48] unit decrease	Affymetrix [339439]	N
599	chr11	1920254	1920255	rs7483477	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11p15.5	LINC01150, LSP1	rs7483477-T	0.75	2E-15	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	LINC01150, LSP1	rs7483477-T	0.75	1E-10	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	7E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	3E-20				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	2E-20				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?		3E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	5E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	9E-10				Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p15.5	TNNI2, LSP1, TNNT3	rs7483477-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.5	NR	rs7483477-T		3E-8		0.344	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.5	NR	rs7483477-T		2E-6	(EA)	0.326	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	NR	rs7483477-T		4E-16		0.36	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.5	NR	rs7483477-T		8E-6		0.184	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	NR	rs7483477-T		1E-13		0.219	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1920254	1920255	rs7483477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	NR	rs7483477-T		1E-7		0.144	unit decrease	Affymetrix [at least 2696785] (imputed)	N
599	chr11	1923534	1923535	rs2668851	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11p15.5	NR	rs2668851-C	0.1141	2E-7		3.9219	[2.44-5.4] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
599	chr11	1924256	1924257	rs683724	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11p15.5	NR	rs683724-T	0.8859	5E-7		4.5461	[2.77-6.32] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
599	chr11	1941945	1941946	rs909116	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11p15.5	TNNT3	rs909116-C	0.45125508195177	3E-8		0.25323248	[0.16-0.34] unit increase	Illumina [247039]	N
599	chr11	1941945	1941946	rs909116	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	11p15.5	LSP1	rs909116-T	0.53	7E-7		1.17	[1.10-1.24]	Illumina [582886]	N
599	chr11	1943119	1943120	rs735955	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11p15.5	TNNT3	rs735955-A	0.42	7E-31	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
599	chr11	1943213	1943214	rs2734498	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.5	TNNT3	rs2734498-T	0.5798	5E-15		0.0143	[0.011-0.018] unit increase	Affymetrix [18391927] (imputed)	N
599	chr11	1947574	1947575	rs540710	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Renin levels	21,758 European ancestry individuals	9,173 individuals	11p15.5		rs540710-A	0.38	2E-7		0.0461	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
600	chr11	1972627	1972628	rs471678	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	11p15.5		rs471678-?	NR	8E-6		1.239		NR [577656]	N
600	chr11	1985126	1985127	rs10769945	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.5	H19, IGF2, MRPL23	rs10769945-T	0.48	5E-7	(H19-ICR)			Illumina [515966]	N
600	chr11	1995222	1995223	rs217719	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.5	MRPL23, MRPL23-AS1	rs217719-A	0.23	3E-18	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
600	chr11	1995222	1995223	rs217719	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	MRPL23, MRPL23-AS1	rs217719-A	0.23	5E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
600	chr11	2001894	2001895	rs10840138	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.5	MRPL23, MRPL23-AS1	rs10840138-T	0.77	4E-10	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
600	chr11	2010967	2010968	rs12575654	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.5	LINC01219, MRPL23-AS1	rs12575654-A	0.26	6E-18	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
600	chr11	2014226	2014227	rs217227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs217227-?	NR	3E-32				NR [~ 8900000] (imputed)	N
600	chr11	2016907	2016908	rs217727	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.5	H19	rs217727-A	0.3913	4E-6	(Japanese)	0.0644	[0.037-0.092] unit increase	Illumina [6200000] (imputed)	N
600	chr11	2016907	2016908	rs217727	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.5	H19	rs217727-?	NR	7E-15				Affymetrix, Illumina [18800000] (imputed)	N
600	chr11	2016907	2016908	rs217727	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.5	H19	rs217727-?		1E-8				Affymetrix, Illumina [18800000] (imputed)	N
600	chr11	2016907	2016908	rs217727	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	NR	rs217727-A	0.1929	4E-14	(EA)	0.0598	[0.044-0.075] unit decrease	Illumina [~ 11800000] (imputed)	N
600	chr11	2016907	2016908	rs217727	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	H19	rs217727-G		1E-9		0.339	unit decrease	Affymetrix [at least 2696785] (imputed)	N
600	chr11	2016907	2016908	rs217727	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	H19	rs217727-G		8E-7		0.183	unit decrease	Affymetrix [at least 2696785] (imputed)	N
600	chr11	2016907	2016908	rs217727	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.5	H19	rs217727-G		2E-6		0.159	unit decrease	Affymetrix [at least 2696785] (imputed)	N
600	chr11	2021492	2021493	rs78276179	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	11p15.5	H19	rs78276179-C	0.089914211	5E-6		1.1871005	[1.102555221-1.278128967]	Illumina [10439017] (imputed)	N
600	chr11	2024543	2024544	rs4930103	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.5	H19	rs4930103-G	0.397	1E-14	(H19-ICR)			Illumina [515966]	N
600	chr11	2024543	2024544	rs4930103	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	11p15.5	H19, MIR675	rs4930103-A	0.49	5E-16	(H19-ICR-CpG02)			Illumina [515966]	N
600	chr11	2028142	2028143	rs3890907	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p15.5	NR	rs3890907-?	NR	4E-8				Illumina [7760689] (imputed)	N
600	chr11	2044149	2044150	rs7115466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs7115466-A	NR	4E-10		0.0166	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
600	chr11	2048487	2048488	rs4930144	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	11p15.5	SYT8, TNNI2, LSP1, H19, ASCL2, IGF2, INS, MRPL23, TH, IGF2AS, TNNT3	rs4930144-A		7E-6				Illumina [944512] (imputed)	N
600	chr11	2076849	2076850	rs78896587	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	11p15.5	INS	rs78896587-T		1E-9		0.20937194	[0.14-0.28] unit decrease	Affymetrix, Illumina [7769284] (imputed)	N
601	chr11	2107654	2107655	rs12575480	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11p15.5	IGF2	rs12575480-A	0.06211	2E-6	(African)			Illumina [4404269] (imputed)	N
601	chr11	2116313	2116314	rs117212336	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	11p15.5	H19	rs117212336-T	0.044348902	2E-7		0.707	[0.44-0.97] unit increase	Affymetrix [~ 9800000] (imputed)	N
601	chr11	2116492	2116493	rs10840341	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11p15.5	H19, IGF2	rs10840341-?	NR	5E-8		0.02131	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
601	chr11	2116492	2116493	rs10840341	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11p15.5	H19, IGF2	rs10840341-?	NR	1E-9		0.02327	[0.016-0.031] unit increase novel	Illumina [6108953] (imputed)	N
601	chr11	2118859	2118860	rs11042596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.5	NR	rs11042596-G	0.662929	5E-10		0.014945593	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr11	2118859	2118860	rs11042596	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p15.5	INS-IGF2	rs11042596-T	0.336254	4E-22		0.026856	[0.021-0.032] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
601	chr11	2118859	2118860	rs11042596	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	INS, IGF2	rs11042596-G	0.6649	2E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
601	chr11	2118859	2118860	rs11042596	30202859	Laisk T	2018-09-07	Hum Mol Genet	Large scale meta-analysis highlights the hypothalamic-pituitary-gonadal (HPG) axis in the genetic regulation of menstrual cycle length.	Length of menstrual cycle	44,871 European ancestry women	NA	11p15.5	IGF2, INS-IGF2	rs11042596-G	0.34	5E-8		0.04	[0.020-0.060] unit increase	Illumina [9344826] (imputed)	N
601	chr11	2120122	2120123	rs77124198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs77124198-T	NR	5E-28		0.0675	[0.056-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2121263	2121264	rs7482894	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p15.5	NR	rs7482894-T	0.65	4E-14		0.0147	[0.011-0.019] unit increase	NR [NR]	N
601	chr11	2121263	2121264	rs7482894	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11p15.5	H19, IGF2, KCNQ1	rs7482894-?	NR	2E-9				Affymetrix, Illumina [at least 5248638] (imputed)	N
601	chr11	2123709	2123710	rs116862756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs116862756-G	NR	3E-17		0.0716	[0.055-0.088] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2130619	2130620	rs72851023	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	11p15.5	INS, IGF2	rs72851023-T	0.07	7E-10		0.0463	[0.032-0.061] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
601	chr11	2131017	2131018	rs78805413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	IGF2	rs78805413-A	NR	1E-8		0.0351772	[0.023-0.047] unit decrease	Affymetrix [321016] (imputed)	N
601	chr11	2136956	2136957	rs74050111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs74050111-C	NR	3E-39		0.0561	[0.048-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2138138	2138139	rs6578985	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	11p15.5	IGF2	rs6578987-?	NR	3E-6	(AAM-CT, Chinese)			Affymetrix [760794]	N
601	chr11	2138138	2138139	rs6578985	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	11p15.5	IGF2	rs6578985-?	NR	6E-6	(AAM-CT, EA)			Affymetrix [760794]	N
601	chr11	2144444	2144445	rs4529869	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11p15.5	IGF2	rs4529869-A	0.5051	3E-6		0.0293	[0.017-0.042] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	8E-17		0.0234	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	8E-12		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	2E-138		0.0705	[0.065-0.076] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	6E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	2E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	2E-9		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2149863	2149864	rs11042751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs11042751-C	NR	2E-12		0.0198	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2150443	2150444	rs2585	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	11p15.5	NR	rs2585-T	0.28	1E-8		0.024330052	[0.016-0.033] unit increase	NR [1977400] (imputed)	N
601	chr11	2151760	2151761	rs555759341	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	INS, IGF2	rs555759341-C	0.0049	4E-8		1.38	[1.23-1.55]	Affymetrix, Illumina [~ 27000000] (imputed)	N
601	chr11	2152540	2152541	rs3168310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	IGF2	rs3168310-C	NR	2E-9		0.0190626	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
601	chr11	2156535	2156536	rs3213225	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	11p15.5	NR	rs3213225-A	0.39	3E-13		0.026	[0.018-0.034] z score decrease	Affymetrix [up to 10400000] (imputed)	N
601	chr11	2161529	2161530	rs149483638	28838971	Mercader JM	2017-08-24	Diabetes	A Loss-of-Function Splice Acceptor Variant in IGF2 Is Protective for Type 2 Diabetes.	Type 2 diabetes	4,052 Hispanic cases and 4,606 Hispanic controls	2,071 Hispanic cases, 5,749 Hispanic controls, 1,519 Pima Indian ancestry cases, 1,680 Pima Indian ancestry controls, 427 Indigenous Mexican ancestry cases, 751 Indigenous Mexican ancestry controls.	11p15.5	INS-IGF2	rs149483638-C	0.86	6E-14		1.28	[1.20-1.37]	Illumina [158892]	N
601	chr11	2163109	2163110	rs4244808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	IGF2, INS-IGF2, IGF2-AS	rs4244808-G	NR	4E-9		0.0168113	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
601	chr11	2163109	2163110	rs4244808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	IGF2, INS-IGF2, IGF2-AS	rs4244808-G	NR	2E-11		0.0207642	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
601	chr11	2163109	2163110	rs4244808	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	11p15.5	INS-IGF2	rs4244808-G	0.46	4E-27		1.28		Illumina [252970]	N
601	chr11	2164798	2164799	rs4366464	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	11p15.5	INS	rs4366464-C		1E-9		0.403326	[0.27-0.53] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
601	chr11	2165575	2165576	rs35506085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	IGF2, INS-IGF2, IGF2-AS	rs35506085-A	NR	6E-14		0.02767	[0.02-0.035] unit decrease	Affymetrix [321016] (imputed)	N
601	chr11	2165575	2165576	rs35506085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	IGF2, INS-IGF2, IGF2-AS	rs35506085-A	NR	5E-11		0.0263916	[0.019-0.034] unit decrease	Affymetrix [323123] (imputed)	N
601	chr11	2165575	2165576	rs35506085	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.5	INS-IGF2	rs35506085-A	0.1847	7E-35		0.0303	[0.025-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
601	chr11	2165575	2165576	rs35506085	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11p15.5	IGF2	rs35506085-A	0.1887	2E-8		0.028758	[0.019-0.039] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
601	chr11	2165575	2165576	rs35506085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs35506085-?	NR	8E-58				NR [~ 8900000] (imputed)	N
601	chr11	2165575	2165576	rs35506085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p15.5	NR	rs35506085-?	NR	5E-10		0.17845	[0.12-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
601	chr11	2165575	2165576	rs35506085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p15.5	NR	rs35506085-?	NR	1E-8	(female)	0.17954	[0.12-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
601	chr11	2167617	2167618	rs1003484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	IGF2, INS-IGF2, IGF2-AS	rs1003484-A	NR	7E-10		0.0216084	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
601	chr11	2167849	2167850	rs17885785	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	11p15.5	INS	rs17885785-T	0.2	8E-11				Illumina [7347414] (imputed)	N
601	chr11	2167980	2167981	rs2239681	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.5	INS-IGF2	rs2239681-A		2E-8		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
601	chr11	2169539	2169540	rs3741210	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p15.5	IGF2	rs3741210-A	0.6584	1E-8		0.0193	[0.013-0.026] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
601	chr11	2169539	2169540	rs3741210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.5		rs3741210-?	NR	1E-10				NR [~ 8900000] (imputed)	N
601	chr11	2169773	2169774	rs3741208	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	11p15.5	INS	rs3741208-T	0.38	2E-7		1.25	[1.15-1.35]	Affymetrix [NR]	N
601	chr11	2169883	2169884	rs3741205	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	11p15.5	IGF2, IGF2-AS	rs3741205-C	0.3997	3E-12		7.002	NR z score increase	Illumina [26237160] (imputed)	N
601	chr11	2170142	2170143	rs1004446	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	11p15.5	IGF2AS	rs1004446-G	NR	3E-23		1.4	[NR]	Affymetrix, Illumina [NR]	N
601	chr11	2170142	2170143	rs1004446	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	11p15.5	INS	rs1004446-C	0.65	4E-9		1.61	[1.37-1.89]	Illumina [543071]	N
601	chr11	2172829	2172830	rs7948458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p15.5	NR	rs7948458-C	NR	2E-11		0.0202	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2172829	2172830	rs7948458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs7948458-C	NR	1E-76		0.056	[0.05-0.062] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2172829	2172830	rs7948458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs7948458-C	NR	2E-15		0.024	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2172829	2172830	rs7948458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p15.5	NR	rs7948458-C	NR	4E-16		0.0245	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2172829	2172830	rs7948458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs7948458-C	NR	5E-17		0.0253	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2172829	2172830	rs7948458	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	11p15.5		rs7948458-A	NR	5E-10		0.0153	[0.011-0.02] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
601	chr11	2172829	2172830	rs7948458	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	11p15.5		rs7948458-A	0.19	2E-36		0.016	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
601	chr11	2172829	2172830	rs7948458	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	11p15.5		rs7948458-A	0.2	1E-5		0.014	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
601	chr11	2172829	2172830	rs7948458	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	11p15.5		rs7948458-A	0.51	5E-6		0.015	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
601	chr11	2172829	2172830	rs7948458	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	11p15.5	INS-IGF2, IGF2-AS	rs7948458-?		2E-21				Illumina [9499600] (imputed)	N
601	chr11	2172829	2172830	rs7948458	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	11p15.5	INS-IGF2, IGF2-AS	rs7948458-?	NR	4E-7	(weight)	0.0137686	[0.0085-0.0191] unit decrease	Illumina [9499600] (imputed)	N
601	chr11	2176851	2176852	rs11602347	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.5		rs11602347-G	0.39	1E-20		9.33	z score increase	Affymetrix [9061022] (imputed)	N
601	chr11	2176851	2176852	rs11602347	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.5		rs11602347-G	0.39	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
601	chr11	2176851	2176852	rs11602347	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.5		rs11602347-G	0.39	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
601	chr11	2176851	2176852	rs11602347	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.5	NR	rs11602347-G	0.4057	5E-11				NR [9056863] (imputed)	N
601	chr11	2176851	2176852	rs11602347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11p15.5	NR	rs11602347-G	NR	2E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2178329	2178330	rs11564722	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p15.5		rs11564722-C	0.759259	5E-9		0.0245457	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
601	chr11	2178329	2178330	rs11564722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p15.5		rs11564722-T	NR	1E-24		0.0204	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
601	chr11	2178329	2178330	rs11564722	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	INS-IGF2	rs11564722-T	NR	7E-13		0.0240759	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
601	chr11	2178329	2178330	rs11564722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.5	INS-IGF2	rs11564722-T	0.240949	9E-13		0.018659724	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
601	chr11	2178329	2178330	rs11564722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs11564722-T	0.293296	2E-15				Affymetrix, Illumina [24653286] (imputed)	N
601	chr11	2178329	2178330	rs11564722	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11p15.5	NR	rs11564722-T	0.23961500000000002	8E-9		0.00868151	[0.0057-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
601	chr11	2178329	2178330	rs11564722	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p15.5	INS-IGF2	rs11564722-T	0.311	9E-23		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
601	chr11	2178329	2178330	rs11564722	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p15.5	INS-IGF2	rs11564722-T	0.2396	1E-21		0.0038	[0.003-0.0046] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
601	chr11	2178329	2178330	rs11564722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.5		rs11564722-?	NR	5E-12				NR [~ 8900000] (imputed)	N
601	chr11	2178669	2178670	rs3842770	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	11p15.5	INS-IGF2	rs3842770-A	0.23	3E-8	(AA)	1.14	[1.09-1.19]	Affymetrix, Illumina [2579389] (imputed)	N
601	chr11	2179203	2179204	rs3842763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p15.5		rs3842763-T	NR	2E-15		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
601	chr11	2179203	2179204	rs3842763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.5		rs3842763-?	NR	2E-8				NR [~ 8900000] (imputed)	N
601	chr11	2179341	2179342	rs150806792	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	Intergenic	rs150806792-?		8E-8		1.19	[1.12-1.26]	Illumina [7645193] (imputed)	N
601	chr11	2179341	2179342	rs150806792	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	INS-IGF2	rs150806792-?		8E-8		1.19	[1.12-1.26]	Illumina [7645193] (imputed)	N
601	chr11	2179341	2179342	rs150806792	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	Intergenic	rs150806792-?		5E-8		4.96	[2.79-8.83]	Illumina [7645193] (imputed)	N
601	chr11	2179341	2179342	rs150806792	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.5	INS-IGF2	rs150806792-?		5E-8		4.96	[2.79-8.83]	Illumina [7645193] (imputed)	N
601	chr11	2179351	2179352	rs3842761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.5		rs3842761-C	NR	2E-37		0.0231	[0.02-0.027] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p15.5	NR	rs775181992-A	0.23975500000000005	1E-11		0.023258	[0.016-0.03] unit increase	Affymetrix [16577313] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.5	NR	rs775181992-A	0.23957700000000004	2E-29		0.0109511	[0.009-0.0129] unit increase	Affymetrix [16582909] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p15.5	NR	rs775181992-A	0.24011099999999996	1E-16		0.011816	[0.0089-0.0147] unit increase	Affymetrix [16585854] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p15.5	NR	rs775181992-A	0.239008	4E-16		0.00998903	[0.0073-0.0127] unit increase	Affymetrix [16582621] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.5	NR	rs775181992-A	0.23957700000000004	1E-26		0.0114739	[0.0093-0.0137] unit increase	Affymetrix [16582965] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p15.5	NR	rs775181992-A	0.24011099999999996	1E-16		0.0138844	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
601	chr11	2179864	2179864	rs775181992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p15.5	NR	rs775181992-A	0.239008	6E-14		0.00973145	[0.0068-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
601	chr11	2181059	2181060	rs3842753	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	11p15.5	INS, INS-IGF2, TH	rs3842753-G	0.265088	3E-7		1.525	[1.297 - 1.795]	Illumina [5396854] (imputed)	N
601	chr11	2181059	2181060	rs3842753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.5		rs3842753-G	NR	8E-44		0.3085	[0.26-0.35] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
601	chr11	2181059	2181060	rs3842753	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p15.5	INS, INS-IGF2	rs3842753-T	0.284	4E-8		0.0075	[0.0044-0.0106] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
601	chr11	2181059	2181060	rs3842753	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p15.5	INS, INS-IGF2	rs3842753-T	0.2806	3E-9		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	3E-10		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	2E-16		0.0234	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	6E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	3E-98		0.0602	[0.055-0.066] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	1E-17		0.025	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	1E-12		0.0202	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	9E-14		0.0213	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181072	2181073	rs3842752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p15.5	NR	rs3842752-A	NR	2E-18		0.0262	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2181394	2181395	rs3842748	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p15.5	NR	rs3842748-C	0.23	1E-17		0.0193	[0.015-0.024] unit increase	NR [NR]	N
601	chr11	2182223	2182224	rs689	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	11p15.5	INS	rs689-T	0.71	1E-160		2.21	[2.08-2.34]	Affymetrix, Illumina [9061522] (imputed)	N
601	chr11	2182223	2182224	rs689	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	11p15.5	INS	rs689-?	NR	1E-6		2.44	[1.69-3.45]	Illumina [787224] (imputed)	N
601	chr11	2182223	2182224	rs689	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	11p15.5	INS	rs689-?	0.715	1E-18		1.473	[1.352-1.605]	Affymetrix, Illumina [8328843] (imputed)	N
601	chr11	2182223	2182224	rs689	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	11p15.5	INS	rs689-T	0.7	1E-100		2.3809524		Illumina [135870]	N
601	chr11	2182223	2182224	rs689	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	11p15.5	INS	rs689-A	NR	5E-196				Affymetrix, Illumina [NR]	N
601	chr11	2182518	2182519	rs571342427	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	INS, IGF2	rs571342427-C	0.0015	1E-6		1.68	[1.36-2.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
601	chr11	2184847	2184848	rs3842727	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	11p15.5	INS	rs3842727-T	0.26	1E-13		1.53	[1.37-1.72]	Illumina [114874]	N
601	chr11	2184847	2184848	rs3842727	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	11p15.5	TH, INS	rs3842727-A	0.716	3E-7		1.9841269		Illumina [131847]	N
601	chr11	2184847	2184848	rs3842727	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	11p15.5	INS, TH	rs3842727-A	0.716	6E-6	(IAA-first)	1.7513134		Illumina [131847]	N
601	chr11	2184847	2184848	rs3842727	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	11p15.5	INS, TH	rs3842727-A	0.716	1E-7	(multiple-IA)	1.6638935		Illumina [131847]	N
601	chr11	2186334	2186335	rs2070762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p15.5		rs2070762-G	0.530528	3E-33		0.0249706	[0.021-0.029] unit increase	Illumina [13479295] (imputed)	N
601	chr11	2186334	2186335	rs2070762	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.5	TH	rs2070762-?	NR	6E-35		0.03612134	[0.03-0.042] unit increase	Illumina [27896057] (imputed)	N
601	chr11	2187441	2187442	rs4072825	31324766	Adeyemo AA	2019-07-19	Nat Commun	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.	Type 2 diabetes	2,342 Sub-Saharan African ancestry cases, 2,889 Sub-Saharan African ancestry controls, 8,599 African American individuals	NA	11p15.5	TH, INS	rs4072825-?	NR	2E-8		5.584	NR z score increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
601	chr11	2190590	2190591	rs7482510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11p15.5		rs7482510-G	0.359516	4E-10		0.0197157	[0.014-0.026] unit decrease	Illumina [13478778] (imputed)	N
601	chr11	2190590	2190591	rs7482510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.5		rs7482510-G	NR	6E-12		0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
601	chr11	2190590	2190591	rs7482510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p15.5		rs7482510-G	NR	6E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
601	chr11	2190590	2190591	rs7482510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.5	TH	rs7482510-G	0.203723	7E-14		0.020959787	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
601	chr11	2190590	2190591	rs7482510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.5	TH	rs7482510-G	0.203727	9E-13		0.019940142	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
601	chr11	2190590	2190591	rs7482510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p15.5	NR	rs7482510-G	0.20673	1E-13		0.018033	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
601	chr11	2190590	2190591	rs7482510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs7482510-G	0.239657	8E-14				Affymetrix, Illumina [24558453] (imputed)	N
601	chr11	2196423	2196424	rs4930045	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.5		rs4930045-C	NR	4E-15		0.8860744	[0.859706754085941-0.913250793697116]	Illumina [8919992] (imputed)	N
601	chr11	2197111	2197112	rs7482891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11p15.5		rs7482891-?	NR	7E-11				NR [~ 8900000] (imputed)	N
601	chr11	2197285	2197286	rs4929965	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	11p15.5	INS	rs4929965-G		2E-31		0.36365113	[0.3-0.42] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
601	chr11	2197285	2197286	rs4929965	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.5	NR	rs4929965-G	0.6152	2E-38		0.0619	[0.052-0.071] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
601	chr11	2197285	2197286	rs4929965	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.5	NR	rs4929965-G	0.6147	5E-57		0.0676	[0.059-0.076] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
601	chr11	2197285	2197286	rs4929965	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.5	INS, IGF2	rs4929965-A	0.07999999999999996	3E-13		1.1235955	[1.09-1.16]	Illumina [12557761] (imputed)	N
601	chr11	2197285	2197286	rs4929965	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	INS, IGF2	rs4929965-A	0.3829	4E-26		1.07	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
601	chr11	2198478	2198479	rs117693013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs117693013-A	NR	2E-44		0.078	[0.067-0.089] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2198478	2198479	rs117693013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p15.5	NR	rs117693013-A	NR	5E-9		0.0326	[0.022-0.044] unit increase	Affymetrix [9000000] (imputed)	N
601	chr11	2198664	2198665	rs72853903	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	11p15.5	INS	rs72853903-C	0.62	6E-10	(conditioned on rs689)	1.1764705		Illumina [135870]	N
601	chr11	2203153	2203154	rs11043003	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11p15.5	INS, IGF2	rs11043003-C	0.082	1E-16		1.11	[1.08-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
601	chr11	2204287	2204288	rs11043007	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	11p15.5	ASCL2, TH	rs11043007-G	0.81	1E-7	(AA)	1.19	[1.11-1.26]	Affymetrix, Illumina [2579389] (imputed)	N
601	chr11	2204716	2204717	rs7129483	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p15.5	MIR4686, ASCL2	rs7129483-C	0.712988	2E-27	(dopamine 3-O-sulfate)	0.269	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
601	chr11	2204716	2204717	rs7129483	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p15.5	MIR4686, ASCL2	rs7129483-C	0.712988	2E-27	(dopamine 3-O-sulfate)	0.269	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
601	chr11	2206325	2206326	rs11564708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.5	Intergenic	rs11564708-C	0.8017	3E-8	(MTAG)	0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
601	chr11	2206932	2206933	rs12277475	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	11p15.5	INS	rs12277475-T	0.219	2E-7		1.28	[1.17-1.40]	Affymetrix, Illumina [12148595] (imputed)	N
601	chr11	2207876	2207877	rs61871274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.5	NR	rs61871274-C	NR	3E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr11	2210657	2210658	rs113945618	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p15.5	MIR4686, ASCL2	rs113945618-A	0.756908	2E-12	(3-methoxytyramine sulfate)	0.187	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
601	chr11	2210657	2210658	rs113945618	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p15.5	MIR4686, ASCL2	rs113945618-A	0.756908	2E-12	(3-methoxytyramine sulfate)	0.187	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
601	chr11	2213165	2213166	rs7111341	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.5	MIR4686	rs7111341-T	0.2614	3E-11		0.067	[0.047-0.087] unit increase	Affymetrix, Illumina [NR] (imputed)	N
601	chr11	2213165	2213166	rs7111341	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.5	MIR4686	rs7111341-T	0.266	3E-6	(EA, women)	0.021	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
601	chr11	2213165	2213166	rs7111341	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	11p15.5	INS	rs7111341-?	NR	4E-48				Affymetrix, Illumina [841622] (imputed)	N
601	chr11	2214387	2214388	rs7937915	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	11p15.5	intergenic	rs7937915-?	0.75	4E-79		1.6963528		Illumina [252970]	N
601	chr11	2215088	2215089	rs7107784	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	11p15.5	MIR4686	rs7107784-G	NR	1E-11		1.07	[ 1.05 - 1.09 ]	Illumina [7521072] (imputed)	N
601	chr11	2215088	2215089	rs7107784	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	11p15.5	MIR4686	rs7107784-G	0.09	2E-8	(Japanese)	1.14	[1.09-1.2]	Illumina [7521072] (imputed)	N
601	chr11	2219936	2219937	rs72853948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.5		rs72853948-A	0.207019	2E-9		0.016678525	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2228951	2228952	rs7126629	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	11p15.5	TH	rs7126629-C	0.21	2E-8		1.44	[1.31-1.57]	Illumina [2639562] (imputed)	N
602	chr11	2229758	2229759	rs10743181	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11p15.5	intergenic	rs10743181-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
602	chr11	2232552	2232553	rs12419620	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	11p15.5	TH	rs12419620-G	0.161	3E-11		0.031	[0.04-0.022] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
602	chr11	2232910	2232911	rs7121039	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	11p15.5		rs7121039-?	NR	1E-17		1.19902	[1.16-1.24]	NR [680312]	N
602	chr11	2233573	2233574	rs7127900	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	11p15.5	NR	rs7127900-A	NR	4E-24		1.19	NR	Affymetrix [at least 232408] (imputed)	N
602	chr11	2233573	2233574	rs7127900	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11p15.5	NR	rs7127900-A	0.2	5E-68		1.19	[1.16-1.21]	Illumina [20370935] (imputed)	N
602	chr11	2233573	2233574	rs7127900	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	11p15.5	NR	rs7127900-A	NR	1E-7		1.4	[NR]	Illumina [2639562] (imputed)	N
602	chr11	2233573	2233574	rs7127900	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	11p15.5	IGF2, INS, TH, IGF2AS	rs7127900-?	0.20	3E-33		1.22	[1.17-1.27]	Illumina [541129]	N
602	chr11	2233789	2233790	rs79950627	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	11p15.5		rs79950627-A	0.05	7E-9	(African, trans-ethnic)	8.4	[5.26-11.54] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
602	chr11	2233789	2233790	rs79950627	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	11p15.5		rs79950627-?	NR	4E-7	(African, trans-ethnic)	9.214	[5.54-12.89] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
602	chr11	2233789	2233790	rs79950627	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels x smoking (current vs non smokers) interaction (1df test)	4,973 African ancestry current smoker individuals, 2,375 Asian ancestry current smoker individuals, 13,799 European ancestry current smoker individuals, 755 Hispanic current smoker individuals, 18,384 African ancestry non smoker individuals, 10,742 Asian ancestry non smoker individuals, 68,719 European ancestry non smoker individuals, 5,894 Hispanic non smoker individuals	1,357 African ancestry current smoker individuals, 8,901 Asian ancestry current smoker individuals, 25,008 European ancestry current smoker individuals, 3,441 Hispanic current smoker individuals, 3,967 African ancestry non smoker individuals, 39,448 Asian ancestry non smoker individuals, 92,432 European ancestry non smoker individuals, 13,555 Hispanic non smoker individuals	11p15.5		rs79950627-A	0.05	1E-6	(African, trans-ethnic)	7.9027	[4.69-11.11] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
602	chr11	2233789	2233790	rs79950627	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels in current smokers	4,973 African ancestry individuals, 2,375 Asian ancestry individuals, 13,799 European ancestry individuals, 755 Hispanic individuals	NA	11p15.5		rs79950627-?	NR	9E-7	(African, trans-ethnic)	8.2998	[4.64-11.96] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
602	chr11	2234092	2234093	rs11043143	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	11p15.5	NR	rs11043143-T	0.187987013	3E-22		1.2215796	[1.17-1.27]	Affymetrix, Illumina [20400945] (imputed)	N
602	chr11	2234092	2234093	rs11043143	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11p15.5	NR	rs11043143-T	NR	2E-73		1.161	[1.14-1.18]	Affymetrix, Illumina [29235255] (imputed)	N
602	chr11	2234092	2234093	rs11043143	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	11p15.5	NR	rs11043143-T	0.289	2E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [18877980] (imputed)	N
602	chr11	2234689	2234690	rs10840606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	11p15.5		rs10840606-G	NR	1E-23		0.178	[0.14-0.21] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
602	chr11	2234689	2234690	rs10840606	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	11p15.5		rs10840606-G	NR	2E-25		1.2496876	NR	Affymetrix [7846216] (imputed)	N
602	chr11	2234689	2234690	rs10840606	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.5	NR	rs10840606-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
602	chr11	2234689	2234690	rs10840606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.5		rs10840606-?	NR	2E-9				NR [~ 8900000] (imputed)	N
602	chr11	2234689	2234690	rs10840606	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p15.5	NA	rs10840606-A	0.817	2E-10		0.0146	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
602	chr11	2237218	2237219	rs4076542	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11p15.5	NR	rs4076542-A	0.3335	2E-8		1.036	[1.023-1.048]	Affymetrix [15688218] (imputed)	N
602	chr11	2238287	2238288	rs10831551	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	11p15.5	ASCL2, MIR4686	rs10831551-C	0.048	5E-6		2.219		Illumina [131847]	N
602	chr11	2270341	2270342	rs17737404	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	11p15.5	ASCL2	rs17737404-A	0.23	4E-10		1.22	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
602	chr11	2291049	2291050	rs116549635	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.5		rs116549635-A	NR	3E-6		1.0882726	[1.05043995286241-1.12746764619609]	Illumina [8919992] (imputed)	N
602	chr11	2291049	2291050	rs116549635	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.5	INS-IGF2, KCNQ1	rs116549635-A	0.057	1E-9	(Conditioned)			Illumina [12557761] (imputed)	N
602	chr11	2295627	2295628	rs12282231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11p15.5		rs12282231-?	NR	1E-8				NR [~ 8900000] (imputed)	N
602	chr11	2308761	2308762	rs2521263	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.5	C11orf21	rs2521263-A	0.309	5E-6	(Fat free mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
602	chr11	2311151	2311152	rs7944004	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	11p15.5	TSPAN32	rs7944004-T	0.49	2E-10		1.2	[1.13-1.27]	Illumina [549934]	N
602	chr11	2319354	2319355	rs2244891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.5	C11orf21	rs2244891-C	0.233535	2E-16		0.021743776	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2320012	2320013	rs16928078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.5		rs16928078-T	NR	9E-17		0.0266	[0.02-0.033] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
602	chr11	2320012	2320013	rs16928078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.5		rs16928078-T	NR	2E-22		0.0362	[0.029-0.043] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
602	chr11	2320012	2320013	rs16928078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.5		rs16928078-T	NR	4E-25		0.0384	[0.031-0.046] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
602	chr11	2320012	2320013	rs16928078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs16928078-T	0.0945239	5E-32				Affymetrix, Illumina [20825802] (imputed)	N
602	chr11	2320012	2320013	rs16928078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.5	NR	rs16928078-T	0.112752	2E-35		0.0381	[0.032-0.044] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
602	chr11	2320012	2320013	rs16928078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.5		rs16928078-?	NR	8E-10				NR [~ 8900000] (imputed)	N
602	chr11	2320012	2320013	rs16928078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.5		rs16928078-?	NR	2E-24				NR [~ 8900000] (imputed)	N
602	chr11	2320012	2320013	rs16928078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.5		rs16928078-?	NR	2E-35				NR [~ 8900000] (imputed)	N
602	chr11	2320012	2320013	rs16928078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.5		rs16928078-?	NR	2E-11				NR [~ 8900000] (imputed)	N
602	chr11	2320012	2320013	rs16928078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p15.5	C11orf21	rs16928078-T	0.1127	2E-12		0.03970624	[0.029-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.5	C11orf21	rs16928079-T	0.112554	7E-18		0.03019195	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.5	C11orf21	rs16928079-T	0.112545	6E-20		0.032334037	[0.025-0.039] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.5	C11orf21	rs16928079-T	0.112555	2E-26		0.0359538	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.5	C11orf21	rs16928079-T	0.112564	1E-30		0.040260296	[0.033-0.047] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.5	C11orf21	rs16928079-T	0.112538	8E-14		0.026214955	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.5	NR	rs16928079-T	0.112745	1E-24		0.031416	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs16928079-T	0.0948626	6E-30				Affymetrix, Illumina [24246363] (imputed)	N
602	chr11	2320557	2320558	rs16928079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.5	NR	rs16928079-T	0.112751	2E-32		0.035776	[0.03-0.042] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
602	chr11	2320883	2320884	rs1501466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p15.5	C11orf21	rs1501466-G	0.1636	6E-12		0.0328635	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2321094	2321095	rs2521269	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	11p15.5	C11orf21	rs2521269-C	0.45799999999999996	4E-8		1.1904762	[1.12-1.27]	Affymetrix, Illumina [~ 8500000] (imputed)	N
602	chr11	2321649	2321650	rs2651823	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	11p15.5	C11orf21, TSPAN32	rs2651823-A	NR	5E-11		1.18	[1.13-1.25]	Affymetrix, Illumina [> 10000000] (imputed)	N
602	chr11	2322828	2322829	rs11022157	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	11p15.5	C11orf21, TSPAN32	rs11022157-A	0.36	3E-6		1.22	[NR]	Illumina [450000] (imputed)	N
602	chr11	2322953	2322954	rs16928084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs16928084-G	0.10033	3E-15				Affymetrix, Illumina [19905671] (imputed)	N
602	chr11	2322953	2322954	rs16928084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11p15.5	NR	rs16928084-G	0.11345	1E-17		0.027734	[0.021-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
602	chr11	2323088	2323089	rs188839109	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	11p15.5	C11orf21	rs188839109-?	NR	2E-8	(African)			Illumina [4404269] (imputed)	N
602	chr11	2323088	2323089	rs188839109	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11p15.5	C11orf21	rs188839109-T	0.009202	3E-7	(African)			Illumina [4404269] (imputed)	N
602	chr11	2323197	2323198	rs734095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	11p15.5	C11orf21	rs734095-G	0.1138	1E-13		0.0410548	[0.03-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2323197	2323198	rs734095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11p15.5	C11orf21	rs734095-G	0.1137	4E-9		0.03317286	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2323197	2323198	rs734095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	11p15.5	C11orf21	rs734095-G	0.1138	2E-12		0.03869207	[0.028-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2324040	2324041	rs2074022	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.5	NR	rs2074022-A	0.05749	4E-9	(CYP3A5)	0.05636	NR unit increase	Illumina [1671387] (imputed)	N
602	chr11	2324040	2324041	rs2074022	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.5	NR	rs2074022-A	0.05749	4E-9	(CYP3A4)	0.6241	NR unit increase	Illumina [1671387] (imputed)	N
602	chr11	2324346	2324347	rs55648810	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.5	TSPAN32	rs55648810-?		1E-6				Illumina [4322238] (imputed)	N
602	chr11	2324346	2324347	rs55648810	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.5	TSPAN32	rs55648810-?		6E-6				Illumina [4322238] (imputed)	N
602	chr11	2325191	2325192	rs117600357	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	11p15.5	NR	rs117600357-A	0.0244	2E-6		1.69	[1.39-2.01]	Illumina [64973696] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.0190050000000001	1E-11		0.055508375	[0.039-0.072] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.019004	1E-11		0.055121444	[0.039-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.018998	8E-11		0.052725803	[0.037-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.019018	1E-11		0.05550658	[0.04-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.019004	5E-11		0.0531226	[0.037-0.069] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.019015	5E-12		0.05581835	[0.04-0.072] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.5	TSPAN32	rs61744929-C	0.019006	3E-10		0.051111955	[0.035-0.067] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.0172856	8E-14				Affymetrix, Illumina [24649327] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.017958	6E-15		0.056058	[0.042-0.07] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs61744929-T	0.982549	7E-13				Affymetrix, Illumina [22063850] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.5	NR	rs61744929-T	0.98187	7E-15		0.056201	[0.042-0.07] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.0175953	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.018261	3E-17		0.061797	[0.047-0.076] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.0181128	5E-10				Affymetrix, Illumina [21126107] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11p15.5	NR	rs61744929-C	0.018728	8E-13		0.053387	[0.039-0.068] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
602	chr11	2325426	2325427	rs61744929	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.5	TSPAN32	rs61744929-C		2E-8		0.047	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
602	chr11	2325426	2325427	rs61744929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.5		rs61744929-?	NR	5E-14				NR [~ 8900000] (imputed)	N
602	chr11	2325996	2325997	rs58833930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.5	TSPAN32	rs58833930-T	0.112783	2E-16		0.029090567	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2325996	2325997	rs58833930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs58833930-T	0.0898206	1E-23				Affymetrix, Illumina [24332387] (imputed)	N
602	chr11	2325996	2325997	rs58833930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs58833930-T	0.0977454	2E-11				Affymetrix, Illumina [19872809] (imputed)	N
602	chr11	2325996	2325997	rs58833930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p15.5	NR	rs58833930-T	0.112968	1E-13		0.023363	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
602	chr11	2326713	2326714	rs2077114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p15.5	TSPAN32	rs2077114-G	0.756221	3E-11		0.017393218	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
602	chr11	2327510	2327511	rs61871577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.5		rs61871577-T	NR	2E-8		0.0251	[0.016-0.034] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
602	chr11	2348618	2348619	rs2651804	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	11p15.5	TSPAN32, CD81-AS1	rs2651804-?	0.83	3E-10		1.2195122		Illumina [4723365]	N
602	chr11	2348859	2348860	rs2521295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11p15.5	CD81-AS1	rs2521295-A	0.8366	1E-10		0.03217484	[0.022-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
602	chr11	2358061	2358062	rs35801296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.5		rs35801296-A	0.4201	2E-8		0.0208628	[0.014-0.028] unit decrease	Illumina [13476266] (imputed)	N
603	chr11	2366259	2366260	rs61871633	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11p15.5		rs61871633-C	0.913	3E-11		0.13	[-0.17--0.09] % decrease	Affymetrix [NR] (imputed)	N
603	chr11	2372355	2372356	rs4930091	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs4930091-C	0.7594	4E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
603	chr11	2380133	2380134	rs800160	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	11p15.5	intergenic	rs800160-?	NR	2E-6		1.24	[NR]	Affymetrix [up to 10996499] (imputed)	N
603	chr11	2391060	2391061	rs800132	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.5	NR	rs800132-G	0.0493	8E-6	(EA)	0.0689	[0.039-0.099] unit increase	Illumina [~ 11800000] (imputed)	N
603	chr11	2426099	2426100	rs7934729	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.5	NR	rs7934729-A	0.01394	2E-8	(HBD)	4.945	NR unit increase	Illumina [1671387] (imputed)	N
603	chr11	2426983	2426984	rs2301696	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	11p15.5	KCNQ1	rs2301696-G	0.404	4E-10		1.14	[0.79-1.49] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
603	chr11	2473130	2473131	rs800336	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	11p15.5	KCNQ1	rs800336-G	0.2504	4E-6		0.0558322	NR unit increase	Illumina [560351]	N
603	chr11	2478518	2478519	rs12271931	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	11p15.5	KCNQ1	rs12271931-A	0.93	4E-12		3.92	[2.8-5.04] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
603	chr11	2481139	2481140	rs16928285	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	11p15.5	KCNQ1	rs16928285-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	11p15.5		rs2074238-T	0.09	1E-106		0.227	[0.21-0.25] unit decrease	Affymetrix [NR]	N
603	chr11	2484802	2484803	rs2074238	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	11p15.5		rs2074238-T	0.09	8E-63		0.17	[0.15-0.19] unit decrease	Affymetrix [NR]	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	9E-26	(352 ms)	0.10636	[0.087-0.126] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-76	(170 ms)	0.177677	[0.16-0.2] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-51	(158 ms)	0.14448	[0.13-0.16] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-46	(328 ms)	0.142834	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-45	(302 ms)	0.14139	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-42	(300 ms)	0.136457	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-35	(342 ms)	0.123869	[0.1-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-33	(148 ms)	0.115365	[0.096-0.135] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-25	(354 ms)	0.104262	[0.084-0.124] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-22	(254 ms)	0.09622	[0.076-0.116] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-21	(136 ms)	0.0916465	[0.072-0.111] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-16	(374 ms)	0.0817416	[0.062-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-127	(208 ms)	0.234975	[0.22-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-110	(188 ms)	0.216304	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	8E-10	(118 ms)	0.0587314	[0.039-0.078] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-9	(380 ms)	0.0586989	[0.039-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-54	(318 ms)	0.15448	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-51	(322 ms)	0.149839	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-42	(152 ms)	0.129679	[0.11-0.15] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-33	(294 ms)	0.120513	[0.1-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-32	(146 ms)	0.112049	[0.093-0.131] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-30	(292 ms)	0.114474	[0.095-0.134] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	7E-101	(230 ms)	0.20872	[0.19-0.23] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-95	(180 ms)	0.199729	[0.18-0.22] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-77	(172 ms)	0.179683	[0.16-0.2] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-75	(238 ms)	0.18086	[0.16-0.2] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-54	(312 ms)	0.154664	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-53	(316 ms)	0.153228	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-40	(336 ms)	0.132541	[0.11-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-39	(334 ms)	0.131552	[0.11-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-31	(344 ms)	0.116777	[0.097-0.137] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-123	(200 ms)	0.229971	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-12	(122 ms)	0.0681845	[0.049-0.088] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	6E-118	(222 ms)	0.226792	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-99	(182 ms)	0.203747	[0.18-0.22] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-8	(110 ms)	0.0524111	[0.033-0.072] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-46	(304 ms)	0.142626	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-37	(150 ms)	0.1222	[0.1-0.14] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-31	(144 ms)	0.112001	[0.092-0.132] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-20	(286 ms)	0.0929137	[0.073-0.113] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-18	(362 ms)	0.0877157	[0.068-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-16	(256 ms)	0.0815301	[0.062-0.101] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-16	(128 ms)	0.0782557	[0.059-0.098] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-14	(282 ms)	0.0762876	[0.056-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-129	(212 ms)	0.235245	[0.22-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	5E-105	(184 ms)	0.211016	[0.19-0.23] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-95	(232 ms)	0.203136	[0.18-0.22] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-84	(236 ms)	0.191091	[0.17-0.21] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-55	(244 ms)	0.155861	[0.14-0.18] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-38	(298 ms)	0.130052	[0.11-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-25	(138 ms)	0.0999359	[0.081-0.119] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-23	(358 ms)	0.100378	[0.081-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-19	(366 ms)	0.0906017	[0.071-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-17	(368 ms)	0.0855223	[0.066-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-15	(370 ms)	0.0796447	[0.06-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-15	(124 ms)	0.0762264	[0.057-0.096] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-129	(210 ms)	0.235045	[0.22-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-124	(216 ms)	0.230858	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-123	(220 ms)	0.22957	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	4E-10	(378 ms)	0.0634459	[0.044-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-91	(178 ms)	0.196038	[0.18-0.22] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-8	(382 ms)	0.056331	[0.036-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-79	(174 ms)	0.183855	[0.16-0.2] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-63	(166 ms)	0.162291	[0.14-0.18] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-47	(154 ms)	0.137903	[0.12-0.16] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-46	(306 ms)	0.142466	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-42	(332 ms)	0.137309	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-41	(248 ms)	0.133766	[0.11-0.15] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-35	(296 ms)	0.124787	[0.1-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-26	(348 ms)	0.107548	[0.088-0.127] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-13	(376 ms)	0.0741215	[0.054-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-126	(214 ms)	0.233128	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-124	(218 ms)	0.231008	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-12	(258 ms)	0.0703721	[0.051-0.09] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-115	(226 ms)	0.223299	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-11	(280 ms)	0.067568	[0.048-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-109	(190 ms)	0.217931	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-109	(186 ms)	0.21577	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	3E-108	(228 ms)	0.216202	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-9	(260 ms)	0.0602876	[0.04-0.08] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-9	(116 ms)	0.0572405	[0.038-0.077] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-89	(234 ms)	0.198013	[0.18-0.22] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-86	(176 ms)	0.190808	[0.17-0.21] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-8	(114 ms)	0.0538376	[0.034-0.073] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-71	(168 ms)	0.171581	[0.15-0.19] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-67	(240 ms)	0.171783	[0.15-0.19] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-62	(242 ms)	0.164785	[0.15-0.18] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-59	(164 ms)	0.157442	[0.14-0.18] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-57	(162 ms)	0.154438	[0.13-0.17] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-52	(314 ms)	0.152541	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-52	(310 ms)	0.15288	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-48	(308 ms)	0.146193	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-41	(338 ms)	0.135777	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-34	(250 ms)	0.12214	[0.1-0.14] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-28	(252 ms)	0.110392	[0.091-0.13] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-26	(140 ms)	0.102083	[0.083-0.122] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-23	(356 ms)	0.101042	[0.081-0.121] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-23	(288 ms)	0.101096	[0.081-0.121] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-18	(364 ms)	0.0891186	[0.069-0.109] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-16	(126 ms)	0.0794804	[0.06-0.099] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-15	(132 ms)	0.0766059	[0.057-0.096] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-15	(130 ms)	0.0767944	[0.057-0.096] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-129	(206 ms)	0.235118	[0.22-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-119	(198 ms)	0.227381	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-118	(224 ms)	0.226434	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-116	(192 ms)	0.222102	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	2E-10	(120 ms)	0.061937	[0.043-0.081] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-53	(160 ms)	0.14815	[0.13-0.17] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-52	(324 ms)	0.152341	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-51	(320 ms)	0.151237	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-50	(326 ms)	0.149862	[0.13-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-50	(156 ms)	0.143657	[0.12-0.16] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-48	(246 ms)	0.145356	[0.13-0.17] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-43	(330 ms)	0.138801	[0.12-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-39	(340 ms)	0.132415	[0.11-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-28	(346 ms)	0.112538	[0.093-0.132] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-28	(142 ms)	0.106368	[0.087-0.126] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-26	(290 ms)	0.107918	[0.088-0.128] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-25	(350 ms)	0.106311	[0.086-0.126] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-20	(360 ms)	0.0945735	[0.075-0.114] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-16	(284 ms)	0.0836031	[0.064-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-16	(134 ms)	0.0801997	[0.061-0.1] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-15	(372 ms)	0.0815277	[0.062-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-127	(204 ms)	0.233373	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-124	(202 ms)	0.23106	[0.21-0.25] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-117	(196 ms)	0.22447	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.0826217	1E-117	(194 ms)	0.2236	[0.2-0.24] unit increase	Affymetrix [10000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	11p15.5		rs2074238-T	0.088004	3E-9	(male)	0.0839159	[0.056-0.112] bpm increase	Affymetrix [9800000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	11p15.5		rs2074238-T	0.088	6E-13		0.066	[0.048-0.084] bpm increase	Affymetrix [9800000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.088	5E-58		0.174	[0.15-0.2] unit decrease	NR [~ 9000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.088	1E-59		0.138	[0.12-0.15] unit decrease	NR [~ 9000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	11p15.5	KCNQ1	rs2074238-T	0.088	7E-34		0.12	[0.1-0.14] unit decrease	NR [~ 9000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	NR	rs2074238-?	NR	2E-12		4.779583	[3.45-6.11] unit increase	Illumina [26659972] (imputed)	N
603	chr11	2484802	2484803	rs2074238	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	11p15.5	KCNQ1	rs2074238-C	0.92	7E-28		5.405	[4.44-6.37] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	11p15.5	KCNQ1	rs2074238-T	0.053	2E-28		4.89	[4.03-5.75] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
603	chr11	2484802	2484803	rs2074238	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	11p15.5	KCNQ1	rs2074238-T	0.06	3E-17		7.88	[6.16-9.59] msec decrease	Affymetrix, Illumina [up to 2543686] (imputed)	N
603	chr11	2486119	2486120	rs16928297	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	NR	rs16928297-?	NR	7E-11		1.398405	[0.98-1.82] unit increase	Illumina [26659972] (imputed)	N
603	chr11	2486119	2486120	rs16928297	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	11p15.5	NR	rs16928297-G	0.51	2E-6		1.25	[0.74-1.76] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
603	chr11	2486549	2486550	rs7122937	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	NR	rs7122937-?	NR	2E-11		1.439996	[1.02-1.86] unit increase	Illumina [26659972] (imputed)	N
603	chr11	2486549	2486550	rs7122937	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	11p15.5	KCNQ1	rs7122937-T	0.188	1E-54		1.93	[1.69-2.17] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
603	chr11	2489341	2489342	rs12296050	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	NR	rs12296050-?	NR	8E-11		1.397762	[0.98-1.82] unit increase	Illumina [26659972] (imputed)	N
603	chr11	2489341	2489342	rs12296050	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	11p15.5	KCNQ1	rs12296050-T	0.15	8E-11	(QT interval)	13.16	[9.19-17.12] % s.d. increase	Illumina [306060]	N
603	chr11	2489341	2489342	rs12296050	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	11p15.5	KCNQ1	rs12296050-T	0.20	3E-17		1.44	[0.95-1.93] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
604	chr11	2490559	2490560	rs116895106	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	11p15.5	KCNQ1	rs116895106-A	0.0104	2E-6		0.2653	[0.16-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr11	2502318	2502319	rs12576239	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	11p15.5	KCNQ1	rs12576239-T	0.13	1E-15		1.75	[1.41-2.09] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
604	chr11	2517011	2517012	rs116949162	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	11p15.5	NR	rs116949162-G	0.9857409	1E-6		1.1350738	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	9E-13	(206 ms)	0.083749	[0.059-0.108] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	9E-12	(330 ms)	0.084894	[0.06-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	9E-10	(232 ms)	0.0722035	[0.048-0.097] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	8E-9	(170 ms)	0.0686092	[0.044-0.093] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	8E-13	(218 ms)	0.0838755	[0.059-0.108] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	8E-12	(222 ms)	0.0822799	[0.058-0.107] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	8E-11	(324 ms)	0.0816194	[0.057-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	8E-10	(302 ms)	0.0747045	[0.05-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	7E-13	(214 ms)	0.08408	[0.06-0.108] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	7E-12	(336 ms)	0.0865788	[0.062-0.111] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	7E-12	(334 ms)	0.0854882	[0.061-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	6E-10	(316 ms)	0.0776235	[0.053-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	6E-10	(230 ms)	0.0724155	[0.048-0.097] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	5E-13	(212 ms)	0.086382	[0.062-0.111] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	5E-12	(328 ms)	0.0857118	[0.061-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	5E-11	(306 ms)	0.0804991	[0.056-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	5E-10	(182 ms)	0.0717813	[0.047-0.096] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	4E-9	(342 ms)	0.0748777	[0.05-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	4E-9	(234 ms)	0.0717468	[0.047-0.096] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	4E-12	(198 ms)	0.0828412	[0.058-0.107] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	4E-10	(322 ms)	0.0778547	[0.053-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-9	(344 ms)	0.0747566	[0.05-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-9	(172 ms)	0.070969	[0.047-0.095] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-13	(220 ms)	0.0856456	[0.061-0.11] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-13	(210 ms)	0.0864296	[0.062-0.111] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-12	(332 ms)	0.0866018	[0.062-0.111] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-12	(216 ms)	0.0818312	[0.057-0.106] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-10	(304 ms)	0.0768601	[0.052-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	3E-10	(300 ms)	0.0766294	[0.052-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-9	(346 ms)	0.0759881	[0.051-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-9	(174 ms)	0.0745033	[0.05-0.099] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-12	(208 ms)	0.0855706	[0.061-0.11] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-12	(204 ms)	0.0820635	[0.058-0.106] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-11	(338 ms)	0.0853695	[0.061-0.11] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-11	(226 ms)	0.0784958	[0.054-0.103] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	2E-11	(194 ms)	0.0799228	[0.056-0.104] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-9	(184 ms)	0.0707854	[0.046-0.095] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-8	(236 ms)	0.0673314	[0.043-0.092] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-12	(202 ms)	0.083455	[0.059-0.108] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-12	(200 ms)	0.0853102	[0.061-0.11] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-11	(326 ms)	0.0844993	[0.06-0.109] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-11	(224 ms)	0.0789911	[0.055-0.103] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-11	(196 ms)	0.0807567	[0.056-0.105] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-11	(192 ms)	0.0803834	[0.056-0.105] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-10	(340 ms)	0.0805768	[0.056-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-10	(320 ms)	0.0800748	[0.055-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-10	(318 ms)	0.0791306	[0.055-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-10	(308 ms)	0.0790351	[0.054-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
604	chr11	2524611	2524612	rs117236107	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.5	KCNQ1	rs117236107-G	0.947658	1E-10	(228 ms)	0.0757344	[0.051-0.1] unit increase	Affymetrix [10000000] (imputed)	N
604	chr11	2524958	2524959	rs35474939	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	11p15.5	NR	rs35474939-T	0.1341	9E-7		0.2202	[0.13-0.31] unit decrease	Illumina [10677593] (imputed)	N
604	chr11	2525394	2525395	rs179405	32429735	Lahrouchi N	2020-05-20	Circulation	Transethnic Genome-Wide Association Study Provides Insights in the Genetic Architecture and Heritability of Long QT Syndrome.	Long QT syndrome	1,238 European ancestry cases, 8,219 European ancestry controls, 418 Japanese cases, 1,617 Japanese controls	NA	11p15.5	KCNQ1	rs179405-?		2E-8		1.38	[1.23-1.54]	Illumina [NR] (imputed)	N
604	chr11	2549228	2549229	rs143709408	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	11p15.5	KCNQ1	rs143709408-?	9.97606E-5	4E-15				Illumina [~ 244000]	N
604	chr11	2549228	2549229	rs143709408	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	11p15.5	KCNQ1	rs143709408-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
604	chr11	2549228	2549229	rs143709408	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	11p15.5	KCNQ1	rs143709408-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
604	chr11	2549228	2549229	rs143709408	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	11p15.5	KCNQ1	rs143709408-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
604	chr11	2550729	2550730	rs179429	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	11p15.5	KCNQ1	rs179429-A	0.167	7E-6	(ADP)			Affymetrix, Illumina [~ 2330000] (imputed)	N
604	chr11	2569902	2569903	rs2283159	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.5		rs2283159-T	NR	1E-11		0.8314428	[0.788276051248055-0.876973378828353]	Illumina [8919992] (imputed)	N
604	chr11	2576894	2576895	rs2283163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs2283163-?	NR	4E-8				NR [~ 8900000] (imputed)	N
604	chr11	2579162	2579163	rs2283164	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs2283164-A	0.9468	1E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
605	chr11	2626333	2626334	rs7947981	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	11p15.5	KCNQ1	rs7947981-G	0.111	3E-7	(QT)			Illumina [~ 2500000]	N
605	chr11	2626790	2626791	rs7130232	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.5	TRPM5	rs7130232-?	NR	5E-6	(anthranilic acid)	1.1864697	[0.68-1.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
605	chr11	2634176	2634177	rs80102379	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs80102379-G	0.9822	9E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [~ 27000000] (imputed)	N
605	chr11	2639291	2639292	rs2106463	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.5		rs2106463-A	NR	3E-24		0.8716614	[0.848891758178977-0.895041827744204]	Illumina [8919992] (imputed)	N
605	chr11	2640419	2640420	rs77402029	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.5	INS-IGF2, KCNQ1	rs77402029-G	0.9	3E-24		1.17	1.13-1.20	Illumina [12557761] (imputed)	N
605	chr11	2642036	2642037	rs117601636	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	11p15.5	KCNQ1	rs117601636-A	NR	1E-7	(Japanese)	1.15959	[1.09783-1.22483]	Illumina [7521072] (imputed)	N
605	chr11	2644543	2644544	rs78695585	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	11p15.5	KCNQ1	rs78695585-A	0.04	3E-9		3.48	[2.32-4.64] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
605	chr11	2645793	2645794	rs80127491	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	11p15.5	KCNQ1, KCNQ1OT1	rs80127491-?	NR	5E-8				Affymetrix, Illumina [22000000] (imputed)	N
605	chr11	2652656	2652657	rs10832417	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p15.5	KCNQ1	rs10832417-T	0.31	4E-7	(MAP, response to intervention)	1.05	[0.64-1.46] mmHg decrease	Affymetrix [2216774] (imputed)	N
605	chr11	2652656	2652657	rs10832417	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p15.5	KCNQ1	rs10832417-T	0.31	1E-6	(SBP, response to intervention)	1.3	[0.77-1.83] mmHg decrease	Affymetrix [2216774] (imputed)	N
605	chr11	2665356	2665357	rs74501871	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.5	KCNQ1	rs74501871-A	0.9063	2E-25		0.0336	[0.027-0.04] unit increase	Affymetrix [18391927] (imputed)	N
605	chr11	2672820	2672821	rs231349	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs231349-T	0.1024	2E-11		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
605	chr11	2673574	2673575	rs6578283	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	4,680 European ancestry individuals	3,566 European ancestry individuals	11p15.5		rs6578283-G	0.300747863	3E-10				Illumina [7417619] (imputed)	N
605	chr11	2680814	2680815	rs151216	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p15.5	KCNQ1, CDKN1C	rs151216-C	0.898719	6E-9		0.024751	[0.016-0.033] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
605	chr11	2691470	2691471	rs231362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.5	NR	rs231362-G	NR	7E-17		0.0205	[0.016-0.025] unit increase	Affymetrix [9000000] (imputed)	N
605	chr11	2691470	2691471	rs231362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p15.5	NR	rs231362-G	NR	2E-12		0.0177	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
605	chr11	2691470	2691471	rs231362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11p15.5		rs231362-?	NR	1E-9				NR [~ 8900000] (imputed)	N
605	chr11	2691470	2691471	rs231362	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.5	KCNQ1	rs231362-G	0.498	4E-9	(EA)	0.0679	[0.045-0.09] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr11	2691470	2691471	rs231362	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.5	KCNQ1	rs231362-G	0.498	2E-11		0.064	[0.044-0.084] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr11	2691470	2691471	rs231362	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11p15.5	KCNQ1	rs231362-G		3E-13		1.08	[1.06-1.10]	Affymetrix, Illumina [2426886] (imputed)	N
605	chr11	2691499	2691500	rs231361	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	11p15.5	NR	rs231361-G	0.656	2E-9		0.08	[0.055-0.105] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
605	chr11	2691499	2691500	rs231361	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	11p15.5	KCNQ1	rs231361-A	0.250479	4E-8		0.073669426	[0.047-0.1] unit increase	Affymetrix [7288503] (imputed)	N
605	chr11	2691499	2691500	rs231361	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs231361-A	0.2564	5E-25		1.08	[1.07-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
605	chr11	2691499	2691500	rs231361	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11p15.5	KCNQ1	rs231361-A	0.285885252458384	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
605	chr11	2696743	2696744	rs7128926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs7128926-?	NR	9E-10				NR [~ 8900000] (imputed)	N
605	chr11	2705342	2705343	rs231356	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	11p15.5	KCNQ1	rs231356-T	0.27	4E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [2579389] (imputed)	N
605	chr11	2709018	2709019	rs231353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.5	KCNQ1OT1	rs231353-G	0.349972	3E-26		0.025168354	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr11	2709018	2709019	rs231353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.5	KCNQ1OT1	rs231353-G	0.349952	3E-10		0.014821836	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr11	2709018	2709019	rs231353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs231353-G	0.465753	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
605	chr11	2709018	2709019	rs231353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.5	NR	rs231353-G	0.357997	4E-14		0.014844	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
605	chr11	2709018	2709019	rs231353	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11p15.5	KCNQ1OT1	rs231353-G	0.3493	2E-9		0.02308014	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
605	chr11	2712565	2712566	rs874031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	KCNQ1OT1	rs874031-?	NR	6E-9		5.612	[3.72-7.5] unit increase	Illumina [26659972] (imputed)	N
605	chr11	2712565	2712566	rs874031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	11p15.5	KCNQ1OT1	rs874031-?	NR	4E-9	(Hispanic/Latino)	5.710829	[3.81-7.61] unit increase	Illumina [26659972] (imputed)	N
605	chr11	2713648	2713649	rs231350	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11p15.5	KCNQ1	rs231350-C	0.645376	5E-8		0.017947	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
605	chr11	2713648	2713649	rs231350	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p15.5	KCNQ1	rs231350-C	0.644553	3E-6		0.012585	[0.0073-0.0178] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
605	chr11	2717679	2717680	rs463924	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.5		rs463924-T	NR	4E-15		1.0952718	[1.07072996268252-1.12037619350107]	Illumina [8919992] (imputed)	N
605	chr11	2719674	2719675	rs35957135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.5	KCNQ1OT1	rs35957135-A	0.308944	8E-9		0.014082907	[0.0093-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr11	2720743	2720744	rs368427206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.5	NR	rs368427206-G	0.274311	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
605	chr11	2726707	2726708	rs3216306	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.5	KCNQ1	rs3216306-?	NR	3E-14		0.03431111	[0.025-0.043] unit decrease	Illumina [27896057] (imputed)	N
605	chr11	2735533	2735534	rs2411884	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	11p15.5	NR	rs2411884-?	NR	2E-9		0.03869	[0.026-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
605	chr11	2740933	2740934	rs67886747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs67886747-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
605	chr11	2743858	2743859	rs2283208	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	11p15.5		rs2283208-?	NR	2E-6		4.0412416		Affymetrix [710007]	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.5	KCNQ1	rs231906-G	0.43289999999999995	4E-7	(men)	0.0284	[0.017-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.5	KCNQ1	rs231906-G	0.43289999999999995	2E-8	(women)	0.0315	[0.021-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.5	KCNQ1	rs231906-G	0.4403	1E-7	(men)	0.0343	[0.022-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.5	KCNQ1	rs231906-G	0.4326	2E-7	(women)	0.0332	[0.021-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.5	KCNQ1	rs231906-?	0.43289999999999995	5E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.5	KCNQ1	rs231906-?	0.43289999999999995	5E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2752608	2752609	rs231906	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	11p15.5	KCNQ1	rs231906-A	0.64	2E-6		1.51	[0.88-2.14] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
606	chr11	2755547	2755548	rs2283220	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.5	KCNQ1	rs2283220-A	0.6896	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
606	chr11	2757984	2757985	rs108961	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	11p15.5	KCNQ1	rs108961-T	0.474	9E-6		0.09	[0.051-0.129] unit increase	Illumina [2316178] (imputed)	N
606	chr11	2763227	2763228	rs7114479	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.5		rs7114479-C	0.39	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
606	chr11	2763776	2763777	rs231878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs231878-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr11	2766281	2766282	rs2237878	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11p15.5	KCNQ1	rs2237878-?	0.07	1E-6	(Lactic dehydrogenase)			Illumina [496032]	N
606	chr11	2767261	2767262	rs149658560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs149658560-A	NR	3E-8		0.0551205	[0.036-0.075] unit decrease	Affymetrix [321114] (imputed)	N
606	chr11	2767261	2767262	rs149658560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs149658560-A	NR	6E-11		0.0597553	[0.042-0.078] unit decrease	Affymetrix [321016] (imputed)	N
606	chr11	2767261	2767262	rs149658560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs149658560-A	NR	8E-11		0.0644464	[0.045-0.084] unit decrease	Affymetrix [323123] (imputed)	N
606	chr11	2770904	2770905	rs186376420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs186376420-T	NR	9E-9		0.0230774	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
606	chr11	2770991	2770992	rs112899037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs112899037-G	NR	7E-11		0.029023	[0.02-0.038] unit increase	Affymetrix [323123] (imputed)	N
606	chr11	2774373	2774374	rs84178	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		11p15.5	KCNQ1	rs84178-A	NR	4E-9		0.0078	[0.0054-0.0102] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
606	chr11	2777191	2777192	rs231889	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11p15.5	H19, IGF2, KCNQ1	rs231889-C	0.107	2E-10		0.416	[0.15-0.68] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
606	chr11	2781518	2781519	rs179785	25967671	Li C	2015-05-13	Nat Commun	Genome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.	Gout	1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls	3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls	11p15.5	KCNQ1	rs179785-?	0.489	1E-8		1.22	[NR]	Affymetrix [603505]	N
606	chr11	2787803	2787804	rs67004488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs67004488-G	NR	3E-9		0.0413631	[0.028-0.055] unit decrease	Affymetrix [321016] (imputed)	N
606	chr11	2789061	2789062	rs63934	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p15.5	KCNQ1	rs63934-A	0.8265	5E-29		0.0041	[0.0033-0.0049] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
606	chr11	2789954	2789955	rs163160	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	11p15.5	KCNQ1	rs163160-A	0.82	2E-9		0.0065	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr11	2793412	2793413	rs76327973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs76327973-A	NR	1E-8		0.079664	[0.052-0.107] unit decrease	Affymetrix [321016] (imputed)	N
606	chr11	2794391	2794392	rs233438	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs233438-A	NR	4E-18		0.0268	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
606	chr11	2794391	2794392	rs233438	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs233438-A	NR	1E-18		0.0272	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
606	chr11	2794391	2794392	rs233438	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p15.5	KCNQ1	rs233438-A	0.8122	8E-27		0.0043	[0.0035-0.0051] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
606	chr11	2797429	2797430	rs163149	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs163149-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr11	2798803	2798804	rs81205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p15.5		rs81205-A	0.534381	2E-11		0.0242415	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
606	chr11	2798803	2798804	rs81205	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	11p15.5	KCNQ1	rs81205-A	0.49	9E-12		0.394	[0.28-0.51] unit increase	Affymetrix [NR] (imputed)	N
606	chr11	2798803	2798804	rs81205	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11p15.5	KCNQ1	rs81205-A	0.5352	5E-20	(EA)	0.0034	[0.0026-0.0042] unit increase	Affymetrix [NR] (imputed)	N
606	chr11	2798803	2798804	rs81205	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11p15.5	KCNQ1	rs81205-A	0.513	7E-18		0.0033	[0.0027-0.0039] unit increase	Affymetrix [NR] (imputed)	N
606	chr11	2799678	2799679	rs2237884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs2237884-C	NR	4E-9		0.0189043	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
606	chr11	2799678	2799679	rs2237884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs2237884-C	NR	1E-9		0.0211815	[0.014-0.028] unit increase	Affymetrix [323123] (imputed)	N
606	chr11	2799869	2799869	rs5789271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs5789271-T	NR	1E-8		0.0178102	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
606	chr11	2799869	2799869	rs5789271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.5	KCNQ1	rs5789271-TG	0.539047	2E-12		0.016011694	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr11	2802089	2802090	rs234886	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	11p15.5	KCNQ1	rs234886-C	0.83	9E-8		0.035	[0.019-0.051] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
606	chr11	2809195	2809196	rs12271773	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.5	KCNQ1	rs12271773-A	0.1159	3E-17		0.025	[0.019-0.031] unit increase	Affymetrix [18391927] (imputed)	N
606	chr11	2810730	2810731	rs2237886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs2237886-T	NR	3E-11		0.0259	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
606	chr11	2810730	2810731	rs2237886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.5	NR	rs2237886-T	NR	4E-11		0.0259	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
606	chr11	2810730	2810731	rs2237886	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	11p15.5	KCNQ1	rs2237886-T	0.107	5E-18		0.043	[0.033-0.053] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
606	chr11	2810730	2810731	rs2237886	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.5	KCNQ1	rs2237886-T	0.11	2E-13		0.046	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
606	chr11	2813004	2813004	rs149419928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs149419928-TG	NR	1E-13		0.0336866	[0.025-0.043] unit increase	Affymetrix [321016] (imputed)	N
606	chr11	2813004	2813004	rs149419928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs149419928-TG	NR	6E-14		0.0372798	[0.028-0.047] unit increase	Affymetrix [323123] (imputed)	N
606	chr11	2813321	2813322	rs143840904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.5		rs143840904-T	NR	5E-79		0.0971	[0.087-0.107] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
606	chr11	2813321	2813322	rs143840904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs143840904-T	NR	4E-10		0.0668027	[0.046-0.088] unit decrease	Affymetrix [321114] (imputed)	N
606	chr11	2813321	2813322	rs143840904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs143840904-T	NR	7E-15		0.0898236	[0.067-0.112] unit decrease	Affymetrix [321114] (imputed)	N
606	chr11	2813321	2813322	rs143840904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.5	KCNQ1	rs143840904-T	NR	8E-18		0.0908379	[0.07-0.112] unit decrease	Affymetrix [321016] (imputed)	N
606	chr11	2813321	2813322	rs143840904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs143840904-T	NR	4E-18		0.0998103	[0.077-0.122] unit decrease	Affymetrix [323123] (imputed)	N
606	chr11	2813321	2813322	rs143840904	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.5	KCNQ1	rs143840904-T	0.0197	1E-30		0.0807	[0.067-0.094] unit decrease	Affymetrix [18391927] (imputed)	N
606	chr11	2813321	2813322	rs143840904	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs143840904-?	NR	8E-23				Affymetrix [~ 8270000] (imputed)	N
606	chr11	2813321	2813322	rs143840904	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.5	KCNQ1	rs143840904-?	NR	1E-17		0.11436368	[0.088-0.141] unit decrease	Illumina [27896057] (imputed)	N
606	chr11	2813321	2813322	rs143840904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.5		rs143840904-?	NR	1E-109				NR [~ 8900000] (imputed)	N
606	chr11	2813344	2813345	rs61869763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.5	KCNQ1	rs61869763-T	NR	6E-15		0.0396476	[0.03-0.05] unit increase	Affymetrix [321114] (imputed)	N
606	chr11	2813344	2813345	rs61869763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs61869763-?	NR	9E-21				Affymetrix [~ 8270000] (imputed)	N
606	chr11	2813344	2813345	rs61869763	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.5	KCNQ1	rs61869763-?	NR	3E-27		0.040659904	[0.033-0.048] unit increase	Illumina [27896057] (imputed)	N
606	chr11	2814959	2814960	rs150199504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p15.5	KCNQ1	rs150199504-C	0.9917	3E-6		0.208	[0.12-0.3] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
606	chr11	2818956	2818957	rs147072329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.5	NR	rs147072329-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
606	chr11	2821064	2821065	rs163171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.5	KCNQ1	rs163171-C	0.771935	1E-13		0.02020004	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr11	2824344	2824345	rs163168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs163168-C	NR	1E-12		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
606	chr11	2826602	2826603	rs3852527	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	11p15.4	NR	rs3852527-?	NR	5E-6		0.3123	[0.18-0.44] unit increase	Illumina [at least 560000] (imputed)	N
606	chr11	2831540	2831541	rs8181588	24101674	Hanson RL	2013-10-07	Diabetes	A genome-wide association study in American Indians implicates DNER as a susceptibility locus for type 2 diabetes.	Type 2 diabetes	278 American Indian ancestry young-onset cases, 129 American Indian ancestry cases, 424 American Indian ancestry controls from 514 sibships	1,273 American Indian ancestry cases, 1,635 American Indian ancestry controls, 793 cases, 3,133 controls	11p15.4	KCNQ1	rs8181588-A	0.48	5E-9		1.3	[NR]	Affymetrix [453654]	N
606	chr11	2838412	2838413	rs163177	28406950	Kim J	2017-04-13	PLoS One	Interaction of iron status with single nucleotide polymorphisms on incidence of type 2 diabetes.	Type 2 diabetes	1,895 Korean ancestry cases, 6,040 Korean ancestry controls	NA	11p15.4	KCNQ1	rs163177-C	0.43	1E-6		1.21		Affymetrix [352228]	N
606	chr11	2839750	2839751	rs2237892	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	11p15.4	KCNQ1	rs2237892-C		5E-11		1.59	[NR]	Illumina [10000000] (imputed)	N
606	chr11	2839750	2839751	rs2237892	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	11p15.4	KCNQ1	rs2237892-?	0.62	5E-7		1.2048193	[1.12-1.3]	Illumina [up to 242901]	N
606	chr11	2839750	2839751	rs2237892	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11p15.4	KCNQ1	rs2237892-T	0.0624895946466012	9E-10		0.096	[0.065-0.127] unit decrease	NR [5035015] (imputed)	N
606	chr11	2839750	2839751	rs2237892	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.4	KCNQ1	rs2237892-T	0.0626	2E-63		0.215	[0.19-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
606	chr11	2839750	2839751	rs2237892	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.4	KCNQ1	rs2237892-T	0.0626	1E-9	(EA)	0.1389	[0.094-0.183] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
606	chr11	2839750	2839751	rs2237892	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	11p15.4	KCNQ1	rs2237892-T	0.36	9E-13		0.0298	[0.022-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
606	chr11	2839750	2839751	rs2237892	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	11p15.4	KCNQ1	rs2237892-C	0.61	4E-29		1.3	[1.24-1.36]	Illumina [6209637] (imputed)	N
606	chr11	2839750	2839751	rs2237892	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	11p15.4	KCNQ1	rs2237892-C	0.657	1E-7		1.32	[1.19-1.46]	Illumina [2234194] (imputed)	N
606	chr11	2839750	2839751	rs2237892	21573907	Parra EJ	2011-05-15	Diabetologia	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	European ancestry individuals	11p15.4	KCNQ1	rs2237892-C	NR	4E-6		1.2	[1.11-1.29]	Affymetrix [315658]	N
606	chr11	2839750	2839751	rs2237892	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	11p15.4	KCNQ1	rs2237892-C	0.59	1E-26		1.33	[1.27-1.41]	Illumina [482625]	N
606	chr11	2839750	2839751	rs2237892	18711367	Yasuda K	2008-08-17	Nat Genet	Variants in KCNQ1 are associated with susceptibility to type 2 diabetes mellitus.	Type 2 diabetes	187 Japanese ancestry cases, 1,504 Japanese ancestry controls	6,552 East Asian ancestry cases, 6,621 East Asian ancestry controls, 2,830 European ancestry cases, 3,740 European ancestry controls	11p15.4	KCNQ1	rs2237892-C	0.61	2E-42		1.45	[1.34-1.47]	NR [82343]	N
606	chr11	2843675	2843676	rs11606985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs11606985-C	NR	8E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
606	chr11	2843802	2843803	rs233449	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.4	INS-IGF2, KCNQ1	rs233449-G	0.82	5E-12	(Conditioned)			Illumina [12557761] (imputed)	N
606	chr11	2844047	2844048	rs233450	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.4		rs233450-G	NR	3E-13	(conditional)	0.92083675	[0.900697932960294-0.941425809104531]	Illumina [8919992] (imputed)	N
606	chr11	2844215	2844216	rs163182	21799836	Cui B	2011-07-22	PLoS One	A genome-wide association study confirms previously reported loci for type 2 diabetes in Han Chinese.	Type 2 diabetes	793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	4,445 Han Chinese ancestry cases, 4,458 Han Chinese ancestry controls	11p15.4	KCNQ1	rs163182-C	0.34	2E-17		1.28	[NR]	Illumina [474515]	N
606	chr11	2846410	2846410	rs202159835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	KCNQ1	rs202159835-ACTGGGG	0.046903	2E-11		0.03850774	[0.027-0.05] unit increase	Affymetrix [93095623] (imputed)	N
606	chr11	2847068	2847069	rs163184	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls		intergenic	rs163184-G	0.493	5E-14	(EA)	0.079	[0.058-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
606	chr11	2847068	2847069	rs163184	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls			KCNQ1	rs163184-G	0.41	1E-7		1.24	[1.14-1.34]	Illumina [NR] (imputed)	N
606	chr11	2847068	2847069	rs163184	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA		KCNQ1	rs163184-G	NR	3E-6	(additive model)	1.114	[1.07-1.16]	NR [9288881] (imputed)	N
606	chr11	2847068	2847069	rs163184	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls		KCNQ1	rs163184-G	0.5	2E-14		1.09	[1.04-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
606	chr11	2847068	2847069	rs163184	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls		KCNQ1	rs163184-G	NR	9E-15	(men)	1.12	[1.09-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
606	chr11	2847068	2847069	rs163184	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls		KCNQ1	rs163184-G	0.498159618830787	1E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
606	chr11	2849529	2849530	rs2283228	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls		11p15.4	KCNQ1	rs2283228-A	0.79	8E-13		1.5	[1.35-1.66]	Illumina [NR] (imputed)	N
606	chr11	2849529	2849530	rs2283228	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	11p15.4	KCNQ1	rs2283228-A	0.89	5E-13		1.19	[1.13-1.24]	Affymetrix, Illumina [2579389] (imputed)	N
606	chr11	2849529	2849530	rs2283228	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	11p15.4	KCNQ1	rs2283228-A	0.89	1E-10	(AA)	1.2	[1.14-1.27]	Affymetrix, Illumina [2579389] (imputed)	N
606	chr11	2850827	2850828	rs234853	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.4	KCNQ1	rs234853-G	0.2482	7E-16		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
606	chr11	2856657	2856658	rs4930011	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p15.4	KCNQ1	rs4930011-C	0.591	3E-8		0.0092	[0.0057-0.0127] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
606	chr11	2856657	2856658	rs4930011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.4	KCNQ1	rs4930011-G	0.390332	5E-10		0.014246749	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
606	chr11	2856657	2856658	rs4930011	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	11p15.4	KCNQ1	rs4930011-G	0.389262	4E-13		0.08729263	[0.064-0.111] unit increase	Affymetrix [7288503] (imputed)	N
606	chr11	2857193	2857194	rs2237895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.4		rs2237895-C	NR	7E-52		0.0311	[0.027-0.035] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
606	chr11	2857193	2857194	rs2237895	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	11p15.4	KCNQ1	rs2237895-C	0.31	4E-9		1.25	[1.16=1.34]	Illumina [up to 242901]	N
606	chr11	2857193	2857194	rs2237895	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.4	NR	rs2237895-C	0.4231	3E-54		0.0725	[0.063-0.082] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
606	chr11	2857193	2857194	rs2237895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11p15.4		rs2237895-?	NR	3E-23				NR [~ 8900000] (imputed)	N
606	chr11	2857193	2857194	rs2237895	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.4	KCNQ1	rs2237895-C	0.426	6E-52		1.12	[1.11-1.14]	Affymetrix, Illumina [~ 27000000] (imputed)	N
606	chr11	2857193	2857194	rs2237895	20174558	Tsai FJ	2010-02-19	PLoS Genet	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	11p15.4	KCNQ1	rs2237895-C	0.33	1E-9		1.29	[1.19-1.40]	Illumina [516737]	N
606	chr11	2857232	2857233	rs60808706	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p15.4	KCNQ1	rs60808706-A	0.3902	6E-9	(East Asian)	0.0345	[0.023-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
606	chr11	2857232	2857233	rs60808706	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	11p15.4	KCNQ1	rs60808706-?	NR	5E-27		0.05117	[0.042-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
606	chr11	2857232	2857233	rs60808706	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p15.4	KCNQ1	rs60808706-A	0.392	1E-38	(Japanese)	0.046	[0.038-0.054] unit increase	Illumina [6108953] (imputed)	N
606	chr11	2857296	2857297	rs234864	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	11p15.4	KCNQ1	rs234864-A	0.6582	2E-12		0.0219	[0.016-0.028] unit decrease	Affymetrix, Illumina [15728197] (imputed)	N
606	chr11	2857296	2857297	rs234864	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p15.4	KCNQ1	rs234864-A	0.547439	2E-9		0.015745	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
606	chr11	2858013	2858014	rs76868685	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.4	INS-IGF2, KCNQ1	rs76868685-C	0.995	3E-7	(Conditioned)			Illumina [12557761] (imputed)	N
606	chr11	2858439	2858440	rs2237896	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	11p15.4	KCNQ1	rs2237896-A	0.0664	1E-7		0.0903	[0.056-0.125] unit decrease	Affymetrix, Illumina [30098705] (imputed)	N
606	chr11	2858439	2858440	rs2237896	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	12,578 Hispanic individuals	NA	11p15.4	KCNQ1	rs2237896-A	0.2125	1E-5		0.1256	[0.075-0.177] unit decrease	Illumina [24662309] (imputed)	N
606	chr11	2858439	2858440	rs2237896	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p15.4	KCNQ1	rs2237896-A	0.0551	7E-6		0.0112	[0.0049-0.0175] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
606	chr11	2858439	2858440	rs2237896	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	11p15.4	KCNQ1	rs2237896-A	0.3698	4E-10		0.0251	[0.017-0.034] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
606	chr11	2858439	2858440	rs2237896	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	11p15.4	KCNQ1	rs2237896-A	0.4	2E-22		0.043	NR unit increase	Illumina [9591901] (imputed)	N
606	chr11	2858439	2858440	rs2237896	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	11p15.4	KCNQ1	rs2237896-G	0.96	7E-9		0.017	unit increase	NR [NR]	N
606	chr11	2858439	2858440	rs2237896	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	11p15.4	KCNQ1	rs2237896-G	0.26	1E-32		1.3623978	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
606	chr11	2858439	2858440	rs2237896	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	11p15.4	KCNQ1	rs2237896-?	NR	7E-39		0.09115	[0.077-0.105] unit decrease novel	Illumina [6108953] (imputed)	N
606	chr11	2858439	2858440	rs2237896	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	11p15.4	KCNQ1	rs2237896-G	0.6145	2E-7		0.0251	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
606	chr11	2858439	2858440	rs2237896	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	11p15.4	KCNQ1	rs2237896-G	NR	3E-70	(Japanese)	1.32546	[1.28479-1.36741]	Illumina [7521072] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	NR	2E-45		0.0402	[0.035-0.046] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	0.376224	2E-45		0.0401668	[0.035-0.046] unit increase	Illumina [13479924] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.4		rs2237897-T	0.391598026	3E-184		0.2792454	[0.26-0.3] unit decrease	Illumina [13429769] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.4		rs2237897-T	NR	1E-196		0.2678	[0.25-0.29] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.4		rs2237897-T	0.391598026	2E-8		0.24306235	[0.16-0.33] unit decrease	Illumina [13421694] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11p15.4		rs2237897-T	0.376292015	2E-127		0.24833097	[0.23-0.27] unit decrease	Illumina [13134967] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11p15.4		rs2237897-T	NR	2E-127		0.2483	[0.23-0.27] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	0.366923	3E-40		0.0590121	[0.05-0.068] unit decrease	Illumina [13466143] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	NR	6E-30		0.0409	[0.034-0.048] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	0.374972	6E-30		0.0408816	[0.034-0.048] unit decrease	Illumina [13476509] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	NR	9E-37		0.0422	[0.036-0.049] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
606	chr11	2858545	2858546	rs2237897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	11p15.4		rs2237897-T	0.37613	9E-37		0.042247	[0.036-0.049] unit increase	Illumina [13479178] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	8,616 Hispanic cases, 11,829 Hispanic controls	NA	11p15.4	NR	rs2237897-T	0.198644	8E-11		0.192775	[0.13-0.25] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	11p15.4	NR	rs2237897-C	0.6218	8E-171		0.26	[0.24-0.28] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	11p15.4	NR	rs2237897-C	0.908	2E-9		0.143	[0.096-0.19] unit increase	Affymetrix, Illumina [945603] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.4	NR	rs2237897-C	0.7624	2E-226		0.2199	[0.21-0.23] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.4		rs2237897-T	0.388979615	3E-168		0.7859327	[0.772628119-0.799466407]	Illumina [8919992] (imputed)	N
606	chr11	2858545	2858546	rs2237897	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11p15.4	KCNQ1	rs2237897-C	0.632	2E-245		1.28	[1.26-1.30]	Affymetrix, Illumina [11800000] (imputed)	N
606	chr11	2858545	2858546	rs2237897	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.4	KCNQ1	rs2237897-C	0.62	3E-168		1.3	1.27-1.32	Illumina [12557761] (imputed)	N
606	chr11	2858545	2858546	rs2237897	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.4	KCNQ1	rs2237897-C	0.9543	8E-32		1.23	[1.19-1.27]	Affymetrix, Illumina [~ 27000000] (imputed)	N
606	chr11	2858545	2858546	rs2237897	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	11p15.4	KCNQ1	rs2237897-A		2E-8		0.0066	unit increase	Illumina [at least 200000]	N
606	chr11	2858545	2858546	rs2237897	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p15.4	KCNQ1	rs2237897-T	0.05	1E-30		0.038	[0.032-0.044] unit increase	Illumina [6108953] (imputed)	N
606	chr11	2858545	2858546	rs2237897	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11p15.4	KCNQ1	rs2237897-?		7E-6	(DI)	1.75	[0.75-2.75] unit increase	Illumina [693128]	N
606	chr11	2858545	2858546	rs2237897	24390345	Williams AL	2013-12-25	Nature	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean ancestry cases, 1959 Singaporean ancestry controls	11p15.4	KCNQ1	rs2237897-C	NR	9E-15		1.31	[1.22-1.41]	Illumina [9200000] (imputed)	N
606	chr11	2858545	2858546	rs2237897	18711366	Unoki H	2008-08-17	Nat Genet	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	11p15.4	KCNQ1	rs2237897-C	0.34	1E-16		1.33	[1.24-1.41]	Affymetrix [207097]	N
606	chr11	2863819	2863820	rs2237898	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11p15.4	KCNQ1	rs2237898-C	NR	7E-6		0.0475146	[0.027-0.068] unit decrease	Illumina [13520550] (imputed)	N
606	chr11	2869032	2869033	rs147445322	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	11p15.4	KCNQ1	rs147445322-?	1.99521E-4	2E-16				Illumina [~ 244000]	N
606	chr11	2869032	2869033	rs147445322	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	11p15.4	KCNQ1	rs147445322-?	1.99521E-4	4E-11				Illumina [~ 244000]	N
607	chr11	2887292	2887293	rs117398108	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Syntrophorhabdaceae abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs117398108-G	0.0175837	4E-8		0.0967671	[0.062-0.131] unit decrease	Illumina [7980478] (imputed)	N
607	chr11	2891964	2891965	rs2239897	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11p15.4	KCNQ1DN	rs2239897-G	0.0637	4E-9		0.04672705	[0.031-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr11	2903059	2903060	rs140215710	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	11p15.4	CDKN1C	rs140215710-A	0.010339	4E-8		0.412643	[0.27-0.56] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
607	chr11	2908753	2908754	rs445084	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.4	KCNQ1	rs445084-G	0.3613	2E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
607	chr11	2916707	2916707	rs374749892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p15.4	NR	rs374749892-GTAATTGCATGGGTTTTGCGAC	NR	1E-9		0.0201	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2916714	2916715	rs2283231	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	11p15.4	SLC22A18AS	rs2283231-?		1E-7				Illumina [479403]	N
607	chr11	2917509	2917510	rs10766451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.4		rs10766451-?	NR	1E-8				NR [~ 8900000] (imputed)	N
607	chr11	2918798	2918799	rs388190	32624584	Yousaf A	2020-07-05	Transl Psychiatry	Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder.	Autism spectrum disorders (repetitive sensory-motor behaviour)	2,509 individuals	NA	11p15.4	SLC22A18AS	rs388190-?	NR	3E-7		0.438	NR unit decrease	Illumina [6900500] (imputed)	N
607	chr11	2936656	2936657	rs440150	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11p15.4	NR	rs440150-G	0.0934089	2E-8		0.0256632	[0.016-0.035] unit increase	Affymetrix [16580851] (imputed)	N
607	chr11	2936951	2936952	rs16928809	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.4	SLC22A18	rs16928809-G	0.90691	1E-15		0.0263539	[0.02-0.033] unit increase	Affymetrix [NR] (imputed)	N
607	chr11	2936951	2936952	rs16928809	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	11p15.4	SLC22A18	rs16928809-A	NR	6E-14		0.026047025	[0.019-0.033] unit decrease	Illumina [242289]	N
607	chr11	2936951	2936952	rs16928809	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	11p15.4	NR	rs16928809-A	0.09	4E-8		0.029	unit decrease	Illumina [242289]	N
607	chr11	2936951	2936952	rs16928809	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	11p15.4	SLC22A18	rs16928809-A	0.09	1E-7		0.06	[0.04-0.08] umol/l increase in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
607	chr11	2940491	2940492	rs450244	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.4	SLC22A18	rs450244-T	0.0892726	2E-18		0.0302382	[0.023-0.037] unit decrease	Affymetrix [NR] (imputed)	N
607	chr11	2941324	2941324	rs3059075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p15.4		rs3059075-GGT	NR	1E-13		0.0291	[0.021-0.037] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
607	chr11	2942592	2942593	rs1661052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11p15.4		rs1661052-A	NR	2E-49		0.0521	[0.045-0.059] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
607	chr11	2942592	2942593	rs1661052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	11p15.4		rs1661052-A	0.92917	9E-13		0.0536425	[0.039-0.068] unit decrease	Illumina [13476323] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	8E-14		0.0307	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	2E-41		0.0556	[0.048-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	1E-12		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	3E-32		0.0522	[0.044-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	4E-10		0.0268	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p15.4	NR	rs1661052-A	NR	1E-14		0.0334	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2942592	2942593	rs1661052	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	11p15.4	SLC22A18	rs1661052-?	NR	5E-11		0.05614	[0.039-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
607	chr11	2953722	2953723	rs3847646	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	11p15.4	SLC22A18, PHLDA2, CDKN1C, NAP1L4	rs3847646-T	NR	5E-6		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
607	chr11	2955166	2955170	rs149153412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p15.4		rs149153412-C	NR	3E-10		0.0164	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
607	chr11	2958537	2958538	rs7935422	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.4	NR	rs7935422-T	NR	2E-8		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
607	chr11	2958537	2958538	rs7935422	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.4	NR	rs7935422-T	0.599	2E-8	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
607	chr11	2958817	2958818	rs2583435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p15.4		rs2583435-C	NR	5E-16		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
607	chr11	2963611	2963612	rs12802296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11p15.4		rs12802296-T	NR	1E-9		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
607	chr11	2981895	2981896	rs7948848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.4	NAP1L4	rs7948848-A	0.391397	1E-9		0.013905434	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
607	chr11	2981895	2981896	rs7948848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7948848-A	0.430637	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
607	chr11	2981895	2981896	rs7948848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p15.4	NR	rs7948848-A	0.391931	8E-13		0.013755	[0.01-0.0175] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
607	chr11	2981895	2981896	rs7948848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.4		rs7948848-?	NR	2E-10				NR [~ 8900000] (imputed)	N
607	chr11	2985540	2985541	rs7127443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p15.4	NAP1L4	rs7127443-G	0.772978	2E-12		0.019005973	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
607	chr11	2988238	2988239	rs7109587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.4	NAP1L4	rs7109587-G	0.771983	6E-17		0.022058543	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr11	2988238	2988239	rs7109587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7109587-G	0.800767	8E-13				Affymetrix, Illumina [19872809] (imputed)	N
607	chr11	2988238	2988239	rs7109587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p15.4	NR	rs7109587-G	0.772093	1E-14		0.01818	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
607	chr11	2988238	2988239	rs7109587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.4		rs7109587-?	NR	3E-14				NR [~ 8900000] (imputed)	N
607	chr11	2988322	2988323	rs7124487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p15.4	NR	rs7124487-T	NR	4E-13		0.0215	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
607	chr11	2988322	2988323	rs7124487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p15.4	NR	rs7124487-T	NR	3E-19		0.0267	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2988322	2988323	rs7124487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11p15.4	NR	rs7124487-T	NR	3E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
607	chr11	2988322	2988323	rs7124487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	11p15.4	NR	rs7124487-T	NR	2E-22		0.0313	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
607	chr11	2990525	2990526	rs11603638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.4		rs11603638-A	NR	7E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
607	chr11	2998621	2998622	rs61871243	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p15.4	NR	rs61871243-G	0.875298	7E-11		0.018856	[0.013-0.025] unit decrease	Affymetrix [15000001]	N
607	chr11	3004525	3004526	rs1468102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.4	NAP1L4	rs1468102-G	0.305789	2E-12		0.01697252	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
607	chr11	3004525	3004526	rs1468102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.4	NAP1L4	rs1468102-G	0.305771	6E-14		0.018085994	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
607	chr11	3004525	3004526	rs1468102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs1468102-G	0.376468	1E-12				Affymetrix, Illumina [24649327] (imputed)	N
607	chr11	3004525	3004526	rs1468102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs1468102-G	0.348547	3E-14				Affymetrix, Illumina [23114412] (imputed)	N
607	chr11	3007612	3007618	rs199677100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11p15.4		rs199677100-A	NR	8E-23		0.0267	[0.021-0.032] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
607	chr11	3008150	3008150	rs112321070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11p15.4		rs112321070-CACCCAG	NR	6E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
607	chr11	3008150	3008150	rs112321070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.4	NAP1L4	rs112321070-CACCCAG	0.740996	5E-14		0.01973373	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr11	3008403	3008404	rs12806061	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p15.4	NAP1L4	rs12806061-G	0.7	2E-11		6.68	z-score increase	Affymetrix [4314223] (imputed)	N
608	chr11	3016425	3016426	rs117906999	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.4	NR	rs117906999-C	0.02265	2E-12	(CALD1)	0.0924	NR unit increase	Illumina [1671387] (imputed)	N
608	chr11	3029088	3029089	rs7481584	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11p15.4	NR	rs7481584-A	NR	1E-10		0.018	[0.012-0.024] mg/dl decrease	Affymetrix [NR] (imputed)	N
608	chr11	3029088	3029089	rs7481584	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	11p15.4	CARS	rs7481584-A	0.3	1E-10		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
608	chr11	3036323	3036324	rs739401	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	11p15.4	CARS	rs739401-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
608	chr11	3063317	3063318	rs116487956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs116487956-?	NR	2E-10				NR [~ 8900000] (imputed)	N
608	chr11	3090125	3090126	rs2412138	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.4	NR	rs2412138-T	0.606325	5E-13		0.00578492	[0.0041-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
608	chr11	3090125	3090126	rs2412138	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.4	NR	rs2412138-T	0.606325	7E-7		0.0044331	[0.0026-0.0063] unit increase	Affymetrix [16582965] (imputed)	N
608	chr11	3103444	3103445	rs11025317	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds (lobar)	2,035 European ancestry cases, 27 Chinese ancestry cases, 36 Malay ancestry cases, 81 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	11p15.4	OSBPL5	rs11025317-A	0.12	3E-7		1.36	NR	Affymetrix, Illumina [NR] (imputed)	N
608	chr11	3104905	3104906	rs57497051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p15.4	NR	rs57497051-A	NR	7E-10		0.0241	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
608	chr11	3134195	3134196	rs72844075	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	11p15.4		rs72844075-?	NR	2E-8		1.8395	[1.2-2.48] unit increase	Affymetrix [NR] (imputed)	N
609	chr11	3149396	3149397	rs1466045	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	11p15.4	OSBPL5	rs1466045-A	NR	8E-6		4.46	z score increase	Illumina [5060354] (imputed)	N
609	chr11	3168537	3168538	rs11820744	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	11p15.4	OSBPL5	rs11820744-T	0.227188	2E-7		0.254587	[0.16-0.35] unit increase	NR [7263501] (imputed)	N
609	chr11	3231349	3231350	rs75309804	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11p15.4	intergenic	rs75309804-T	NR	6E-7				Illumina [up to 11995908] (imputed)	N
609	chr11	3234936	3234937	rs78107865	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11p15.4	intergenic	rs78107865-A	NR	4E-7	(EA)			Illumina [up to 11995908] (imputed)	N
609	chr11	3249828	3249829	rs11026040	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	11p15.4	NR	rs11026040-?		8E-6		1.71	[NR]	Illumina [NR] (imputed)	N
609	chr11	3259808	3259809	rs11026091	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		11p15.4	MRGPRE	rs11026091-?		2E-6	(Cluxel minimum distance)			Illumina [208975]	N
611	chr11	3498874	3498875	rs11027560	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	11p15.4	NR	rs11027560-T	0.187934	2E-6		1.1389521	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
612	chr11	3552765	3552766	rs11027855	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11p15.4	NR	rs11027855-?	NR	4E-12		6.921	NR z score decrease	Illumina [at least 830937] (imputed)	N
612	chr11	3557879	3557880	rs531763248	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	11p15.4		rs531763248-?	NR	5E-6		1.816	[1.407-2.343]	Affymetrix [7975321] (imputed)	N
612	chr11	3642697	3642698	rs972503721	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs972503721-C	NR	4E-9	(conditional)	4.69	[3.12-6.26] unit decrease	Illumina [94681438]	N
612	chr11	3651877	3651878	rs7103059	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11p15.4		rs7103059-?	NR	1E-6		1.079575	[1.04683800951232-1.11333553491112]	Illumina [7827597] (imputed)	N
612	chr11	3651877	3651878	rs7103059	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11p15.4		rs7103059-?	NR	1E-6		1.079575	[1.04683800951232-1.11333553491112]	Illumina [7827597] (imputed)	N
613	chr11	3674879	3674880	rs61878546	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p15.4	NR	rs61878546-?	NR	2E-8				Illumina [7760689] (imputed)	N
613	chr11	3710743	3710744	rs7950004	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p15.4	NR	rs7950004-A	NR	4E-7	(African)	0.6942	[0.43-0.96] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
613	chr11	3722303	3722304	rs685782	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	11p15.4	NUP98	rs685782-C		7E-6		0.192	[0.05-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr11	3808224	3808225	rs10767588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.4	NR	rs10767588-G	NR	9E-13		0.0208	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
614	chr11	3855867	3855868	rs4379840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.4	RHOG	rs4379840-T	0.471059	2E-13		0.01665322	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
614	chr11	3856667	3856668	rs1451724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p15.4	RHOG	rs1451724-A	0.471291	6E-10		0.01376423	[0.0094-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr11	3862787	3862788	rs11030022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs11030022-T	0.540652	2E-12				Affymetrix, Illumina [19905671] (imputed)	N
614	chr11	3862787	3862788	rs11030022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11p15.4	NR	rs11030022-T	0.541858	1E-13		0.015636	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
614	chr11	3865495	3865496	rs147702004	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	11p15.4	RHOG	rs147702004-T	0.018	1E-8		1.95	[1.55-2.45]	Illumina [11310926] (imputed)	N
614	chr11	3877113	3877118	rs147711952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11p15.4	STIM1	rs147711952-C	0.381144	1E-13		0.017175844	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr11	3881067	3881068	rs4486622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	STIM1	rs4486622-T	0.119719	4E-11		0.023142487	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
614	chr11	3881067	3881068	rs4486622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	STIM1	rs4486622-T	0.11973	1E-9		0.021576544	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
614	chr11	3885510	3885511	rs4414209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	STIM1	rs4414209-G	0.305837	4E-28		0.027054012	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
614	chr11	3887175	3887176	rs11030122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p15.4	STIM1	rs11030122-G	0.303126	5E-14		0.018630333	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
614	chr11	3887175	3887176	rs11030122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.4	NR	rs11030122-C	0.696404	9E-43		0.028801	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
614	chr11	3887175	3887176	rs11030122	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	11p15.4	STIM1	rs11030122-G	0.3016	8E-11		0.02578378	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr11	3887175	3887176	rs11030122	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.4	STIM1	rs11030122-G	0.3016	5E-11		0.02614956	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
614	chr11	3894266	3894267	rs10835226	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	11p15.4	NR	rs10835226-T	0.3181	5E-10		0.0178064	[0.012-0.023] unit increase	Affymetrix [3505788] (imputed)	N
614	chr11	3900207	3900208	rs183796502	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	11p15.4		rs183796502-A	NR	4E-6		0.28	[0.15-0.51]	Illumina [10838245] (imputed)	N
614	chr11	3923285	3923286	rs10767695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs10767695-A	0.702658	4E-42				Affymetrix, Illumina [17210439] (imputed)	N
615	chr11	3933294	3933295	rs7118422	33495439	Demontis D	2021-01-25	Nat Commun	Risk variants and polygenic architecture of disruptive behavior disorders in the context of attention-deficit/hyperactivity disorder.	Disruptive behavior disorder and attention deficit hyperactivity disorder	3,802 European ancestry cases, 31,305 European ancestry controls, 406 Han Chinese ancestry cases, 917 Han Chinese ancestry controls	NA	11p15.4	STIM1	rs7118422-T	0.51	3E-10		1.173	[1.12-1.22]	Affymetrix, Illumina, Perlegen [8285688] (imputed)	N
615	chr11	3939649	3939650	rs12290747	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	11p15.4		rs12290747-C	0.279632224	3E-9		0.88783604	[0.853539071-0.923511112]	Illumina [8919992] (imputed)	N
615	chr11	3943276	3943277	rs7128762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.4		rs7128762-?	NR	5E-11				NR [~ 8900000] (imputed)	N
615	chr11	3944329	3944330	rs142720800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.4		rs142720800-C	NR	3E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
615	chr11	3944329	3944330	rs142720800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p15.4		rs142720800-C	NR	7E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
615	chr11	3944329	3944330	rs142720800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	STIM1	rs142720800-C	0.540174	9E-10		0.01395371	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
615	chr11	3972231	3972232	rs146792726	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11p15.4	STIM1	rs146792726-A	0.012	5E-8	(East Asian)	0.39	[0.23-0.55] unit decrease	Illumina [up to 13042663] (imputed)	N
615	chr11	4033953	4033954	rs1046527207	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs1046527207-T	NR	4E-9		11.22	[7.5-14.94] unit decrease	Illumina [97506867]	N
615	chr11	4039055	4039056	rs11030639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urticaria	9,893 East Asian ancestry cases, 162,190 East Asian ancestry controls	NA	11p15.4		rs11030639-G	0.304597283	3E-9		0.09601821	[0.064-0.128] unit increase	Illumina [13429081] (imputed)	N
615	chr11	4055506	4055506	rs139115730	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	11p15.4	NR	rs139115730-TTA	0.264976	6E-16		0.0185	[0.014-0.023] unit increase	Affymetrix [23037915] (imputed)	N
616	chr11	4063915	4063916	rs147605117	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11p15.4	STIM1	rs147605117-G	0.012	5E-8	(East Asian)	0.39	[0.23-0.55] unit decrease	Illumina [up to 13042663] (imputed)	N
616	chr11	4098251	4098252	rs11827790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs11827790-?	NR	2E-11				Affymetrix [NR]	N
616	chr11	4102732	4102733	rs570790548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	STIM1	rs570790548-A	0.00143599999999999	2E-9		0.171827	[0.12-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr11	4105269	4105270	rs7124301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11p15.4	STIM1	rs7124301-C	0.590083	2E-12		0.01589519	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr11	4113199	4113200	rs3750996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urticaria	1,057 European ancestry cases, 482,892 European ancestry controls, 9,893 East Asian ancestry cases, 162,190 East Asian ancestry controls	NA	11p15.4		rs3750996-G	NR	9E-9		0.12	[0.079-0.161] unit increase	Affymetrix, Illumina [25844326] (imputed)	N
616	chr11	4113199	4113200	rs3750996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	11p15.4		rs3750996-G	0.171924	2E-8		0.0368536	[0.024-0.05] unit decrease	Illumina [13468899] (imputed)	N
616	chr11	4113199	4113200	rs3750996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11p15.4		rs3750996-G	NR	2E-8		0.0369	[0.024-0.05] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
616	chr11	4113199	4113200	rs3750996	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11p15.4	STIM1	rs3750996-A	0.834	2E-12		1.167	[1.12-1.21]	Illumina [11270530] (imputed)	N
616	chr11	4113199	4113200	rs3750996	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	11p15.4	STIM1	rs3750996-?	NR	1E-8		0.0446	[0.029-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
616	chr11	4117708	4117709	rs2735691	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	STIM1	rs2735691-?	NR	5E-6	(adenosine monophosphate)	0.16720437	[0.095-0.239] unit increase	Affymetrix [at least 2500000] (imputed)	N
616	chr11	4117729	4117730	rs10835611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p15.4		rs10835611-C	NR	2E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
616	chr11	4123426	4123427	rs232054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs232054-C	0.466753	3E-22				Affymetrix, Illumina [22063850] (imputed)	N
616	chr11	4123426	4123427	rs232054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.4	NR	rs232054-C	0.451582	3E-23		0.018817	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
616	chr11	4128485	4128486	rs725519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.4		rs725519-G	NR	7E-34		0.0244	[0.02-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
616	chr11	4128485	4128486	rs725519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.4		rs725519-G	NR	6E-31		0.0233	[0.019-0.027] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	RRM1	rs725518-A	0.598678	2E-24		0.023252243	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	RRM1	rs725518-A	0.598712	2E-27		0.024900712	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	RRM1	rs725518-A	0.598832	2E-39		0.0299268	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.4	RRM1	rs725518-A	0.598832	6E-34		0.027376719	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.4	NR	rs725518-A	0.595371	1E-59		0.030371	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs725518-A	0.580388	2E-51				Affymetrix, Illumina [20825802] (imputed)	N
616	chr11	4128844	4128845	rs725518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.4	NR	rs725518-A	0.596812	2E-46		0.028037	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
616	chr11	4129119	4129120	rs11030967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.4		rs11030967-?	NR	1E-15				NR [~ 8900000] (imputed)	N
616	chr11	4129119	4129120	rs11030967	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11p15.4	RRM1	rs11030967-T	0.6037	3E-14		0.02771503	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr11	4129858	4129859	rs11030976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.4		rs11030976-?	NR	1E-43				NR [~ 8900000] (imputed)	N
616	chr11	4130542	4130543	rs11030980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.4	RRM1	rs11030980-G	0.550515	6E-14		0.016701033	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr11	4131579	4131580	rs67074167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs67074167-G	0.58034	9E-65				Affymetrix, Illumina [24246363] (imputed)	N
616	chr11	4132857	4132858	rs137969593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	RRM1	rs137969593-T	0.00105500000000003	1E-12		0.25046095	[0.18-0.32] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr11	4151295	4151296	rs7947605	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	11p15.4	RRM1	rs7947605-?	NR	5E-9		0.02827	[0.019-0.038] unit increase novel	Illumina [6108953] (imputed)	N
616	chr11	4160680	4160681	rs11031096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p15.4	RRM1-AS1	rs11031096-C	0.5949	5E-20		0.03291965	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr11	4160680	4160681	rs11031096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p15.4	RRM1-AS1	rs11031096-C	0.5948	3E-20		0.03318573	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr11	4170790	4170791	rs4910914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11p15.4		rs4910914-G	0.463256	1E-8		0.0209359	[0.014-0.028] unit increase	Illumina [13476299] (imputed)	N
616	chr11	4170790	4170791	rs4910914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11p15.4	NR	rs4910914-C	0.538525	4E-10		0.026113	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
616	chr11	4176670	4176671	rs12292724	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11p15.4	RRM1	rs12292724-A	NR	3E-10		0.0255718	[0.017-0.034] unit increase	Affymetrix [16832071] (imputed)	N
617	chr11	4208305	4208306	rs761910563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	RP11-23F23.2	rs761910563-A	0.00114899999999996	6E-10		0.20978515	[0.14-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr11	4234285	4234289	rs146396423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p15.4	RP11-23F23.3	rs146396423-A	0.358766	8E-10		0.0142966015	[0.0097-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr11	4234285	4234285	rs766326470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p15.4	NR	rs766326470-D	0.35907	4E-10		0.013455	[0.0093-0.0177] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
618	chr11	4367366	4367367	rs75596821	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	11p15.4	NR	rs75596821-G	NR	6E-6		0.7298	NR	Illumina [at least 560000] (imputed)	N
618	chr11	4413774	4413775	rs2250241	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	11p15.4	NR	rs2250241-T	0.43	6E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
618	chr11	4417128	4417129	rs11032090	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	11p15.4	TRIM21, OR52K2	rs11032090-G	0.196297709	8E-6		1.0693008	[1.038397649-1.101123671]	Illumina [10439017] (imputed)	N
619	chr11	4469721	4469722	rs569117290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	11p15.4	OR52K2	rs569117290-?	NR	5E-11	(AA)	1.071052	[0.75-1.39] unit increase	Illumina [27815891] (imputed)	N
619	chr11	4469721	4469722	rs569117290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	11p15.4	OR52K2	rs569117290-?	NR	3E-12		1.023	[0.73-1.31] unit increase	Illumina [27815891] (imputed)	N
619	chr11	4486939	4486940	rs331500	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	11p15.4	NR	rs331500-G	NR	3E-11		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
619	chr11	4486939	4486940	rs331500	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	11p15.4	NR	rs331500-G	NR	7E-11				Affymetrix, Illumina [NR] (imputed)	N
619	chr11	4496845	4496846	rs2278170	22470424	Kwee LC	2012-03-28	PLoS One	A high-density genome-wide association screen of sporadic ALS in US veterans.	Amyotrophic lateral sclerosis	Up to 639 European ancestry cases, 6,257 European ancestry controls	Up to 183 European ancestry cases, 961 European ancestry controls	11p15.4	OR52K1	rs2278170-?	NR	7E-6	(outcome)	1.43	[1.25-1.67]	Affymetrix, Illumina [1280579]	N
619	chr11	4516575	4516576	rs10160399	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	OR52K1	rs10160399-A	0.042	2E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
619	chr11	4563217	4563218	rs12416860	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	OR52M1	rs12416860-G	0.073	4E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
620	chr11	4588413	4588414	rs7129551	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs7129551-?	NR	8E-6				Affymetrix [NR]	N
620	chr11	4595295	4595296	rs140072088	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	11p15.4	NR	rs140072088-?	NR	7E-6		9.9413	[1.9-17.99] unit increase	Illumina [at least 560000] (imputed)	N
620	chr11	4597243	4597244	rs968218067	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs968218067-G	NR	3E-11	(conditional)	10.9	[7.69-14.11] unit decrease	Illumina [97506867]	N
620	chr11	4600944	4600945	rs1001697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p15.4	C11orf40	rs1001697-T	0.30107	5E-9		0.014176018	[0.0094-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr11	4600944	4600945	rs1001697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.4	C11orf40	rs1001697-T	0.301097	4E-9		0.014200737	[0.0095-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr11	4605194	4605195	rs2566255	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	11p15.4	C11orf40, OR52I2	rs2566255-?	NR	2E-6	(% Change in score)	0.26	[NR] unit increase	Illumina [~ 7000000] (imputed)	N
620	chr11	4615233	4615234	rs4910511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs4910511-G	0.325626	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
620	chr11	4615233	4615234	rs4910511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p15.4	NR	rs4910511-G	0.328884	4E-12		0.013775	[0.0099-0.0177] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
620	chr11	4637306	4637307	rs376072857	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.4	NR	rs376072857-C	0.01045	1E-8	(COL18A1)	0.09085	NR unit increase	Illumina [1671387] (imputed)	N
620	chr11	4661284	4661285	rs905871	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p15.4	OR51D1	rs905871-A	0.658	3E-8		0.011745263	[0.0076-0.0159] unit increase	Affymetrix [11514654] (imputed)	N
620	chr11	4662748	4662749	rs78687573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs78687573-?	NR	1E-9				NR [~ 8900000] (imputed)	N
620	chr11	4673787	4673788	rs17224476	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p15.4	OR51E1	rs17224476-A	0.1103	1E-10		0.1547	[0.11-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
620	chr11	4688837	4688838	rs535808923	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs535808923-C	NR	4E-15	(conditional)	3.63	[2.73-4.53] unit decrease	Illumina [94681438]	N
620	chr11	4709221	4709222	rs73388897	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	11p15.4	OR51E2	rs73388897-T	0.0124	1E-7		0.1183	[0.076-0.161] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
620	chr11	4712280	4712281	rs567428723	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs567428723-A	NR	9E-15	(conditional)	8.53	[6.37-10.69] unit decrease	Illumina [97506867]	N
620	chr11	4713810	4713811	rs1505210	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	11p15.4	OR51E2, OR51C1P	rs1505210-G	0.139325	3E-6		1.316	[1.173 - 1.476]	Illumina [5397657] (imputed)	N
621	chr11	4790574	4790575	rs12788102	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	11p15.4	HBB	rs12788102-A	NR	2E-16		2.15	[1.79-2.59]	Illumina [1300000] (imputed)	N
621	chr11	4808306	4808307	rs17227928	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	11p15.4	NR	rs17227928-?	NR	4E-6		0.2549	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
621	chr11	4824627	4824628	rs61880854	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p15.4	NR	rs61880854-?	NR	2E-6	(EA)	0.5821	[0.34-0.82] unit increase	Illumina [up to 11892802] (imputed)	N
621	chr11	4824627	4824628	rs61880854	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p15.4	NR	rs61880854-?	NR	5E-7	(EA)	0.5055	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
622	chr11	4853353	4853354	rs576600909	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs576600909-A	NR	6E-12	(conditional)	1.92	[1.37-2.47] unit increase	Illumina [76131582]	N
622	chr11	4853353	4853354	rs576600909	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs576600909-A	NR	8E-26	(conditional)	9.56	[7.78-11.34] unit decrease	Illumina [97506867]	N
622	chr11	4853353	4853354	rs576600909	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs576600909-A	NR	4E-24	(conditional)	3.78	[3.05-4.51] unit decrease	Illumina [94681438]	N
622	chr11	4872286	4872287	rs77554180	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs77554180-T	NR	6E-14	(conditional)	0.22	[0.16-0.28] unit increase	Illumina [92652022]	N
622	chr11	4885547	4885548	rs2196122	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	11p15.4	OR51H1P, OR51H2P	rs2196122-G	0.84	7E-7	(EA, SBP, Age 20-29)	1.91	[1.17-2.65] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
622	chr11	4920229	4920230	rs890565237	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs890565237-A	NR	5E-11	(conditional)	2.36	[1.65-3.07] unit decrease	Illumina [110351653]	N
622	chr11	4922531	4922532	rs112902560	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Cystatin C levels	9,354 African ancestry individuals	NA	11p15.4		rs112902560-T	0.0471	2E-11		0.25	[0.17-0.33] mg/L increase	NR [NR] (imputed)	N
622	chr11	4923181	4923182	rs7935375	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs7935375-?	NR	7E-9				Affymetrix [NR]	N
622	chr11	4953239	4953240	rs113342804	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	11p15.4	OR51, MMP26	rs113342804-A	0.99	9E-11	(Conditioned on rs334)	2.28	[1.59-2.97] g/dL increase	Illumina [27801688] (imputed)	N
622	chr11	4953772	4953773	rs73407039	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p15.4	NR	rs73407039-T	NR	4E-6	(African)	0.4499	[0.26-0.64] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
622	chr11	4980445	4980446	rs148992522	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p15.4	NR	rs148992522-?	NR	3E-8				Illumina [7760689] (imputed)	N
623	chr11	4980780	4980781	rs114310641	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs114310641-G	NR	4E-11	(conditional)	0.13	[0.091-0.169] unit increase	Illumina [92652022]	N
623	chr11	4991061	4991062	rs35996509	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	11p15.4	MMP26	rs35996509-T		2E-6		0.037	[0.022-0.052] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
623	chr11	4997544	4997545	rs545389801	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs545389801-G	NR	3E-12	(conditional)	1.95	[1.4-2.5] unit increase	Illumina [76131582]	N
623	chr11	4997544	4997545	rs545389801	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs545389801-G	NR	7E-27	(conditional)	9.64	[7.88-11.4] unit decrease	Illumina [97506867]	N
623	chr11	4997544	4997545	rs545389801	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs545389801-G	NR	3E-25	(conditional)	3.81	[3.08-4.54] unit decrease	Illumina [94681438]	N
623	chr11	5029702	5029703	rs2445284	23406172	Milton JN	2013-02-14	Br J Haematol	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African ancestry, West African ancestry and Afro-Caribbean individuals, 745 individuals	11p15.4	OR51L1	rs2445284-G	0.05	1E-29		0.82	[0.68-0.96] unit decrease	Illumina [569554]	N
624	chr11	5114713	5114714	rs149371331	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs149371331-A	NR	3E-18	(conditional)	0.23	[0.17-0.29] unit increase	Illumina [92652022]	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,166 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00309795	5E-19		1.28518	[1-1.57] SD units increase	Affymetrix, Illumina [28471494] (imputed)	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	8,189 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00308925	8E-31		1.6599	[1.38-1.94] SD units increase	Affymetrix, Illumina [28493162] (imputed)	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00308963	4E-34		1.74276	[1.46-2.02] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	8,185 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00309076	9E-26		1.5117	[1.23-1.79] SD units decrease	Affymetrix, Illumina [28487724] (imputed)	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00309114	5E-34		1.73746	[1.46-2.02] SD units decrease	Affymetrix, Illumina [28486451] (imputed)	N
624	chr11	5116415	5116416	rs529302116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	8,189 South Asian ancestry individuals	NA	11p15.4	NR	rs529302116-A	0.00308925	4E-13		1.04367	[0.76-1.32] SD units decrease	Affymetrix, Illumina [28493177] (imputed)	N
624	chr11	5116543	5116544	rs534057083	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs534057083-A	NR	6E-15	(conditional)	1.94	[1.45-2.43] unit increase	Illumina [76131582]	N
624	chr11	5116543	5116544	rs534057083	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs534057083-A	NR	1E-34	(conditional)	9.81	[8.24-11.38] unit decrease	Illumina [97506867]	N
624	chr11	5116543	5116544	rs534057083	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs534057083-A	NR	3E-33	(conditional)	3.89	[3.26-4.52] unit decrease	Illumina [94681438]	N
624	chr11	5116543	5116544	rs534057083	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs534057083-A	NR	3E-9	(conditional)	0.91	[0.62-1.2] unit decrease	Illumina [110351653]	N
624	chr11	5180585	5180586	rs557604438	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs557604438-T	NR	3E-12	(conditional)	0.84	[0.6-1.08] unit decrease	Illumina [101200590]	N
624	chr11	5180585	5180586	rs557604438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	15,133 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs557604438-G	0.998388	9E-10		1.097602	[0.75-1.45] SD units increase	Affymetrix, Illumina [36870618] (imputed)	N
624	chr11	5186092	5186093	rs9804550	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	White blood cell count	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	TRIM68	rs9804550-T	0.051	1E-10	(Pomak)	0.52	[0.36-0.68] unit increase	Illumina [at least 13541454] (imputed)	N
624	chr11	5186092	5186093	rs9804550	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Red blood cell count	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	TRIM68	rs9804550-T	0.054	9E-10	(Pomak)	0.473	[0.32-0.62] unit increase	Illumina [at least 13541454] (imputed)	N
624	chr11	5186092	5186093	rs9804550	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Mean corpuscular volume	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	TRIM68	rs9804550-T	0.052	2E-45		1.071	[0.92-1.22] unit decrease	Illumina [at least 13541454] (imputed)	N
624	chr11	5186092	5186093	rs9804550	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Mean corpuscular hemoglobin concentration	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	TRIM68	rs9804550-T	0.054	8E-33		0.894	[0.75-1.04] g/dL increase	Illumina [at least 13541454] (imputed)	N
624	chr11	5186092	5186093	rs9804550	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Mean corpuscular hemoglobin	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	TRIM68	rs9804550-T	0.053	2E-15	(Pomak)	0.627	[0.47-0.78] unit decrease	Illumina [at least 13541454] (imputed)	N
624	chr11	5221075	5221076	rs61735483	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p15.4	NR	rs61735483-A	NR	3E-6	(African)	0.4498	[0.26-0.64] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
624	chr11	5225446	5225447	rs7950726	23043469	Menzel S	2012-10-09	Br J Haematol	HbA2 levels in normal adults are influenced by two distinct genetic mechanisms.	HbA2 levels	2,322 European ancestry individuals	1,716 European ancestry individuals	11p15.4	HBB	rs7950726-A	0.12	1E-11				Illumina [531038]	N
624	chr11	5225634	5225635	rs11036238	19465909	Jallow M	2009-05-24	Nat Genet	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	11p15.4	HBB	rs11036238-?	0.14	4E-11		1.59	[1.39-1.82]	Affymetrix [402814]	N
624	chr11	5230906	5230907	rs7120391	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	11p15.4	NR	rs7120391-?	NR	2E-18		0.2561558	[0.2-0.31] unit increase	Illumina [27815891] (imputed)	N
624	chr11	5230906	5230907	rs7120391	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	11p15.4	HBE1, HBG2	rs7120391-C	0.01776	4E-7		0.324	[0.2-0.45] g/dL increase	Illumina [27801688] (imputed)	N
624	chr11	5230906	5230907	rs7120391	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	11p15.4	NR	rs7120391-?	NR	2E-8				NR [2500000] (imputed)	N
624	chr11	5230906	5230907	rs7120391	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	11p15.4	NA	rs7120391-C	0.12	5E-9	(MCHC)	0.3	[0.20-0.40] unit increase	Illumina [907954]	N
624	chr11	5233642	5233643	rs6578583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.4		rs6578583-C	0.9467672	2E-9		0.029902373	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
625	chr11	5244664	5244665	rs141845179	33783510	Fatumo S	2021-03-30	Hum Mol Genet	Discovery and fine-mapping of kidney function loci in first genome-wide association study in Africans.	Estimated glomerular filtration rate	3,288 Ugandan ancestry individuals	8,224 African American individuals	11p15.4	HBB	rs141845179-G	0.08	1E-6		0.266	[0.17-0.36] unit increase (discovery)	Illumina [20594556] (imputed)	N
625	chr11	5246731	5246732	rs34029390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.4	HBB	rs34029390-G	0.00495299999999999	2E-9		0.10344113	[0.07-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5246731	5246732	rs34029390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.4	NR	rs34029390-A	0.995072	1E-12		0.107364	[0.078-0.137] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
625	chr11	5246907	5246908	rs33946267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	HBB	rs33946267-G	2.59000000000009E-4	1E-10		0.485629	[0.36-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5246907	5246908	rs33946267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.4	NR	rs33946267-C	0.999715	3E-15		0.466066	[0.35-0.58] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
625	chr11	5247140	5247141	rs1609812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.4		rs1609812-A	NR	4E-9		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
625	chr11	5247140	5247141	rs1609812	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs1609812-A	NR	4E-9		0.0196	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	11p15.4		rs11549407-?	NR	2E-13		2.10799	[1.52-2.7] unit increase	NR [9800000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	11p15.4		rs11549407-?	NR	2E-15		2.27991	[1.7-2.86] unit increase	NR [9800000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	11p15.4		rs11549407-?	NR	3E-18		2.56325	[1.97-3.15] unit decrease	NR [9800000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	11p15.4		rs11549407-?	NR	8E-11		1.92125	[1.33-2.51] unit decrease	NR [9800000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs11549407-A	NR	1E-23	(conditional)	1.78	[1.43-2.13] unit decrease	Illumina [101200590]	N
625	chr11	5248003	5248004	rs11549407	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs11549407-A	0.026	3E-21		2.14	[1.69-2.59] unit decrease	Illumina [110351653]	N
625	chr11	5248003	5248004	rs11549407	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA			rs11549407-A	NR	2E-13				Illumina [110396782]	N
625	chr11	5248003	5248004	rs11549407	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.4	HBB	rs11549407-?		5E-23		0.48	[0.39-0.57] unit decrease	Illumina [31500000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.4	HBB	rs11549407-?		6E-22		0.4677	[0.37-0.56] unit increase	Illumina [31500000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05441	2E-12		0.4419	[0.32-0.56] unit decrease	Illumina [17926607] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05441	5E-15		0.5022	[0.38-0.63] unit decrease	Illumina [17926605] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on B cell	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05409	3E-10		0.3904	[0.27-0.51] unit increase	Illumina [18030716] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05408	2E-9		0.3576	[0.24-0.47] unit decrease	Illumina [18030777] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05408	2E-8		0.3431	[0.22-0.46] unit decrease	Illumina [18030777] (imputed)	N
625	chr11	5248003	5248004	rs11549407	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs11549407-A	0.05409	4E-9		0.3625	[0.24-0.48] unit decrease	Illumina [18030638] (imputed)	N
625	chr11	5248003	5248004	rs11549407	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	11p15.4	HBB	rs11549407-A	3.0E-4	2E-12	(Hispanic/Latino)	1.92	[1.39-2.45] unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
625	chr11	5248003	5248004	rs11549407	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hematocrit	14,735 African American individuals, 6,762 African ancestry individuals, 21,684 Hispanic/Latino individuals	7,050 African American individuals	11p15.4	HBB	rs11549407-A	3.0E-4	9E-10	(Hispanic/Latino)	1.66	[1.13-2.19] unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
625	chr11	5248231	5248232	rs334	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	3,224 African American or Afro-Caribbean individuals	NA	11p15.4		rs334-A	0.0557	5E-13		0.4658	[0.34-0.59] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
625	chr11	5248231	5248232	rs334	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	11p15.4		rs334-A	0.0351	2E-33		0.601	[0.5-0.7] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
625	chr11	5248231	5248232	rs334	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	11p15.4		rs334-A	0.0117	2E-24		0.8168	[0.66-0.97] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
625	chr11	5248231	5248232	rs334	34582791	Mikhaylova AV	2021-09-27	Am J Hum Genet	Whole-genome sequencing in diverse subjects identifies genetic correlates of leukocyte traits: The NHLBI TOPMed program.	Lymphocyte counts	14,246 African American individuals, 686 East Asian ancestry individuals, 33,285 European American ancestry individuals, 13,585 Hispanic/Latin American individuals	199,126 African ancestry, European ancestry, Hispanic or Latin American individuals	11p15.4		rs334-A	NR	3E-13		0.1737	[0.13-0.22] cell/L decrease	NR [94120287]	N
625	chr11	5248231	5248232	rs334	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Urinary sodium levels	9,354 African ancestry individuals	NA	11p15.4		rs334-A	0.0634	5E-36		0.42	[0.36-0.48] umol/L decrease	NR [NR] (imputed)	N
625	chr11	5248231	5248232	rs334	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Urinary potassium levels	9,354 African ancestry individuals	NA	11p15.4		rs334-A	0.0634	3E-32		0.39	[0.33-0.45] umol/L decrease	NR [NR] (imputed)	N
625	chr11	5248231	5248232	rs334	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Urinary creatinine levels	9,354 African ancestry individuals	2,522 African ancestry individuals	11p15.4		rs334-A	0.0634	3E-38		0.43	[0.37-0.49] umol/L decrease	NR [NR] (imputed)	N
625	chr11	5248231	5248232	rs334	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 1,046 African Americans individuals	NA	11p15.4	HBB	rs334-?	NR	4E-10		8.2	unit decrease	NR [14100000] (imputed)	N
625	chr11	5248231	5248232	rs334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs334-T	0.997575	1E-18				Affymetrix, Illumina [20825802] (imputed)	N
625	chr11	5248231	5248232	rs334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs334-T	0.997505	5E-17				Affymetrix, Illumina [23472807] (imputed)	N
625	chr11	5248231	5248232	rs334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	13,477 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs334-T	0.93645	1E-19		0.244267	[0.19-0.3] SD units increase	Affymetrix, Illumina [36456147] (imputed)	N
625	chr11	5248231	5248232	rs334	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	11p15.4	HBB	rs334-A	0.01	8E-11		0.53	[0.37-0.69] unit increase	Illumina [32241096] (imputed)	N
625	chr11	5248231	5248232	rs334	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	11p15.4	HBB, HBD, HBBP1, BGLT3, HBG1, HBG2, OR51V1, HBE1, OR51B4, OR52A1, OR52A5, OR51B2, OR51B5, OR51B6, OR51M1, OR52E2, OR52J3, OR51Q1, OR51I1, OR51I2, OR51L1, MMP26, OR52D1, OR51A2, OR51A4, UBQLN3, UBQLNL, OLFM5P, OR51G1, OR51G2, OR52H1, OR51A7, OR51T1, OR52B6, TRIM6, TRIM6-TRIM34, OR51S1, TRIM34, OR51F2, OR52R1, TRIM5, OR51F1, TRIM22, OR56B1, OR52N4, OR51E2, OR52N5, OR52N1, OR51E1, OR51D1, OR52N2, OR52E6, TRIM68, OR52E8, OR52I1, OR52I2, C11orf40, OR52E4, OR52M1, OR56A3, OR52K1, OR56A5, OR52L1, OR56A4, OR52K2, OR56A1, TRIM21, OR52B4, OR56B4, OR52B2, OR52W1, C11orf42, FAM160A2, CNGA4, LOC100506082, CCKBR, RRM1, PRKCDBP, STIM1, SMPD1, APBB1, HPX, TRIM3, ARFIP2, TIMM10B, DNHD1, MIR4687, RRP8, ILK, TAF10, TPP1, RHOG, DCHS1, PGAP2, NUP98, MRPL17, GVINP1, OR2AG2, CHRNA10, OR2AG1, ART1, OR6A2, ART5, TRPC2, OR10A5, OR10A2, OR10A4, LOC101927708, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, TSSC2, OR7E12P, ZNF195, RBMXL2, MRGPRE, MRGPRG-AS1, MIR302E, MRGPRG, SYT9, OSBPL5, CARS, LOC100506258, NAP1L4, OLFML1, SNORA54, PPFIBP2, PHLDA2, SLC22A18, SLC22A18AS, CDKN1C, KCNQ1DN, KCNQ1-AS1, KCNQ1, CYB5R2, OVCH2, KCNQ1OT1, OR5P2, OR5P3, OR5E1P, LOC283299, OR10A6, OR10A3, NLRP10, EIF3F, CASC23, TRPM5, TUB, TSSC4, CD81, TUB-AS1, CD81-AS1, RIC3, TSPAN32, C11orf21, ASCL2, LMO1	rs334-?		4E-69	(heterogeneous)	1.572	[1.4-1.75] unit decrease	Illumina [1492601] (imputed)	N
625	chr11	5248231	5248232	rs334	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	11p15.4	HBB, HBD, HBBP1, BGLT3, HBG1, HBG2, OR51V1, HBE1, OR51B4, OR52A1, OR52A5, OR51B2, OR51B5, OR51B6, OR51M1, OR52E2, OR52J3, OR51Q1, OR51I1, OR51I2, OR51L1, MMP26, OR52D1, OR51A2, OR51A4, UBQLN3, UBQLNL, OLFM5P, OR51G1, OR51G2, OR52H1, OR51A7, OR51T1, OR52B6, TRIM6, TRIM6-TRIM34, OR51S1, TRIM34, OR51F2, OR52R1, TRIM5, OR51F1, TRIM22, OR56B1, OR52N4, OR51E2, OR52N5, OR52N1, OR51E1, OR51D1, OR52N2, OR52E6, TRIM68, OR52E8, OR52I1, OR52I2, C11orf40, OR52E4, OR52M1, OR56A3, OR52K1, OR56A5, OR52L1, OR56A4, OR52K2, OR56A1, TRIM21, OR52B4, OR56B4, OR52B2, OR52W1, C11orf42, FAM160A2, CNGA4, LOC100506082, CCKBR, RRM1, PRKCDBP, STIM1, SMPD1, APBB1, HPX, TRIM3, ARFIP2, TIMM10B, DNHD1, MIR4687, RRP8, ILK, TAF10, TPP1, RHOG, DCHS1, PGAP2, NUP98, MRPL17, GVINP1, OR2AG2, CHRNA10, OR2AG1, ART1, OR6A2, ART5, TRPC2, OR10A5, OR10A2, OR10A4, LOC101927708, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, TSSC2, OR7E12P, ZNF195, RBMXL2, MRGPRE, MRGPRG-AS1, MIR302E, MRGPRG, SYT9, OSBPL5, CARS, LOC100506258, NAP1L4, OLFML1, SNORA54, PPFIBP2, PHLDA2, SLC22A18, SLC22A18AS, CDKN1C, KCNQ1DN, KCNQ1-AS1, KCNQ1, CYB5R2, OVCH2, KCNQ1OT1, OR5P2, OR5P3, OR5E1P, LOC283299, OR10A6, OR10A3, NLRP10, EIF3F, CASC23, TRPM5, TUB, TSSC4, CD81, TUB-AS1, CD81-AS1, RIC3, TSPAN32, C11orf21, ASCL2, LMO1	rs334-?		2E-67	(dominant)	1.385	[0.84-1.93] unit decrease	Illumina [1492601] (imputed)	N
625	chr11	5248231	5248232	rs334	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	11p15.4	HBB, HBD, HBBP1, BGLT3, HBG1, HBG2, OR51V1, HBE1, OR51B4, OR52A1, OR52A5, OR51B2, OR51B5, OR51B6, OR51M1, OR52E2, OR52J3, OR51Q1, OR51I1, OR51I2, OR51L1, MMP26, OR52D1, OR51A2, OR51A4, UBQLN3, UBQLNL, OLFM5P, OR51G1, OR51G2, OR52H1, OR51A7, OR51T1, OR52B6, TRIM6, TRIM6-TRIM34, OR51S1, TRIM34, OR51F2, OR52R1, TRIM5, OR51F1, TRIM22, OR56B1, OR52N4, OR51E2, OR52N5, OR52N1, OR51E1, OR51D1, OR52N2, OR52E6, TRIM68, OR52E8, OR52I1, OR52I2, C11orf40, OR52E4, OR52M1, OR56A3, OR52K1, OR56A5, OR52L1, OR56A4, OR52K2, OR56A1, TRIM21, OR52B4, OR56B4, OR52B2, OR52W1, C11orf42, FAM160A2, CNGA4, LOC100506082, CCKBR, RRM1, PRKCDBP, STIM1, SMPD1, APBB1, HPX, TRIM3, ARFIP2, TIMM10B, DNHD1, MIR4687, RRP8, ILK, TAF10, TPP1, RHOG, DCHS1, PGAP2, NUP98, MRPL17, GVINP1, OR2AG2, CHRNA10, OR2AG1, ART1, OR6A2, ART5, TRPC2, OR10A5, OR10A2, OR10A4, LOC101927708, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, TSSC2, OR7E12P, ZNF195, RBMXL2, MRGPRE, MRGPRG-AS1, MIR302E, MRGPRG, SYT9, OSBPL5, CARS, LOC100506258, NAP1L4, OLFML1, SNORA54, PPFIBP2, PHLDA2, SLC22A18, SLC22A18AS, CDKN1C, KCNQ1DN, KCNQ1-AS1, KCNQ1, CYB5R2, OVCH2, KCNQ1OT1, OR5P2, OR5P3, OR5E1P, LOC283299, OR10A6, OR10A3, NLRP10, EIF3F, CASC23, TRPM5, TUB, TSSC4, CD81, TUB-AS1, CD81-AS1, RIC3, TSPAN32, C11orf21, ASCL2, LMO1	rs334-?		1E-55	(additive)	1.106	[0.97-1.24] unit decrease	Illumina [1492601] (imputed)	N
625	chr11	5248231	5248232	rs334	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Red cell distribution width	up to 7,526 African ancestry individuals	NA	11p15.4		rs334-T	0.923	2E-17		0.5795535	[0.45-0.71] unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
625	chr11	5248231	5248232	rs334	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p15.4	HBB	rs334-A	0.0616	5E-15	(AA)	0.2438	[0.18-0.3] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
625	chr11	5248231	5248232	rs334	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	6,795 African American individuals	NA	11p15.4	HBB	rs334-?	NR	6E-8				Affymetrix, Illumina [at least 8034757] (imputed)	N
625	chr11	5248231	5248232	rs334	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	11p15.4	HBB	rs334-A	0.056	3E-8		1.957	[1.26-2.65] unit decrease	Affymetrix [NR] (imputed)	N
625	chr11	5248231	5248232	rs334	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	11p15.4	HBB	rs334-A	0.059	7E-13		3.793	[2.76-4.83] unit decrease	Affymetrix [NR] (imputed)	N
625	chr11	5248231	5248232	rs334	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	11p15.4	NR	rs334-?	NR	8E-26		0.4404093	[0.36-0.52] unit increase	Illumina [27815891] (imputed)	N
625	chr11	5248231	5248232	rs334	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	11p15.4	HBB	rs334-?	NR	8E-27	(Hispanic/Latino)	0.8169163	[0.67-0.97] unit decrease	Illumina [22871999] (imputed)	N
625	chr11	5248231	5248232	rs334	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	11p15.4	HBB	rs334-A	0.013	3E-39		0.305	[0.26-0.35] % decrease	Illumina [11510031] (imputed)	N
625	chr11	5248231	5248232	rs334	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Red cell distribution width	1,625 Sub-Saharan African ancestry individuals	NA	11p15.4	HBB	rs334-?	NR	6E-17				Illumina [20594536] (imputed)	N
625	chr11	5248231	5248232	rs334	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	11p15.4	HBB	rs334-?	NR	5E-20				Illumina [20594536] (imputed)	N
625	chr11	5248231	5248232	rs334	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	11p15.4	HBB	rs334-?	NR	1E-12				Illumina [20594536] (imputed)	N
625	chr11	5248231	5248232	rs334	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	11p15.4	HBB	rs334-?	NR	9E-13	(Heterozygous)	7.633588	[NR]	Illumina [15200000] (imputed)	N
625	chr11	5248231	5248232	rs334	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	11p15.4	HBB	rs334-T	0.99	1E-22		3.46	[2.75-4.17] fL increase	Illumina [27801688] (imputed)	N
625	chr11	5248231	5248232	rs334	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hematocrit	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	11p15.4	HBB	rs334-T	0.99	1E-10		1.32	[0.93-1.71] % increase	Illumina [27801688] (imputed)	N
625	chr11	5248231	5248232	rs334	27650483	Kramer HJ	2016-09-20	J Am Soc Nephrol	African Ancestry-Specific Alleles and Kidney Disease Risk in Hispanics/Latinos.	Urinary albumin-to-creatinine ratio	5,458 Caribbean Hispanic/Latino individuals, 6,734 Mainland Hispanic/Latino individuals, 34 Hispanic/Latino individuals	NA	11p15.4	HBB	rs334-T	NR	8E-12		0.44	[0.32-0.56] unit decrease	Illumina [2536661] (imputed)	N
625	chr11	5248231	5248232	rs334	27650483	Kramer HJ	2016-09-20	J Am Soc Nephrol	African Ancestry-Specific Alleles and Kidney Disease Risk in Hispanics/Latinos.	Urinary albumin-to-creatinine ratio	5,458 Caribbean Hispanic/Latino individuals, 6,734 Mainland Hispanic/Latino individuals, 34 Hispanic/Latino individuals	NA	11p15.4	HBB	rs334-T	NR	3E-10	Caribbean Hispanic	0.5	[0.34-0.66] unit decrease	Illumina [2536661] (imputed)	N
625	chr11	5248232	5248233	rs33930165	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	11p15.4		rs33930165-T	0.9863	3E-8		0.3022	[0.2-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	3E-10	(conditional)	0.62	[0.42-0.82] unit increase	Illumina [76131582]	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	2E-22		0.25	[0.19-0.31] unit increase	Illumina [92652022]	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	1E-64		5.52	[4.87-6.17] unit decrease	Illumina [97506867]	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	1E-50	(conditional)	5.03	[4.36-5.7] unit decrease	Illumina [97506867]	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	4E-43		0.7	[0.6-0.8] unit increase	Illumina [101200590]	N
625	chr11	5248232	5248233	rs33930165	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs33930165-T	NR	1E-23		1.31	[1.06-1.56] unit decrease	Illumina [94681438]	N
625	chr11	5248232	5248233	rs33930165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs33930165-C	0.999166	1E-21				Affymetrix, Illumina [24332387] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	14,222 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs33930165-C	0.981378	2E-23		0.481282	[0.39-0.58] SD units decrease	Affymetrix, Illumina [36679691] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	14,222 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs33930165-C	0.981378	1E-39		0.634331	[0.54-0.73] SD units increase	Affymetrix, Illumina [36679766] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs33930165-C	0.999206	5E-28				Affymetrix, Illumina [21126107] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	12,766 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs33930165-C	0.98081	1E-25		0.518779	[0.42-0.62] SD units decrease	Affymetrix, Illumina [36221496] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	11p15.4		rs33930165-?	0.9927	2E-8		0.5348	[0.35-0.72] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	11p15.4		rs33930165-?	0.9927	4E-12		0.2182	[0.16-0.28] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals	NA	11p15.4		rs33930165-?	0.9875	6E-6		0.1743	[0.099-0.25] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	11p15.4		rs33930165-?	0.9981	3E-7		0.2773	[0.17-0.38] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	11p15.4		rs33930165-?	0.9927	4E-45		6.0733	[5.23-6.92] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	11p15.4		rs33930165-?	0.9875	1E-25		5.4646	[4.44-6.49] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	11p15.4		rs33930165-?	0.9981	4E-24		8.3913	[6.77-10.01] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	11p15.4		rs33930165-?	0.9981	5E-25		1.9802	[1.6-2.36] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	11p15.4		rs33930165-?	0.9927	6E-49		0.9275	[0.8-1.05] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	11p15.4		rs33930165-?	0.9875	2E-31		0.7731	[0.64-0.9] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	11p15.4		rs33930165-?	0.9927	2E-15		1.3127	[0.99-1.64] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	11p15.4		rs33930165-?	0.9875	9E-11		1.2985	[0.91-1.69] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
625	chr11	5248232	5248233	rs33930165	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	11p15.4	HBB	rs33930165-C	0.997	7E-24		1.86	[1.51-2.21] g/dL decrease	Illumina [27801688] (imputed)	N
625	chr11	5248329	5248330	rs34598529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	13,519 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs34598529-T	0.998182	1E-14		1.281328	[0.96-1.61] SD units decrease	Affymetrix, Illumina [36660117] (imputed)	N
625	chr11	5248329	5248330	rs34598529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	11p15.4	NR	rs34598529-T	0.998186	2E-23		1.649662	[1.33-1.97] SD units increase	Affymetrix, Illumina [36043646] (imputed)	N
625	chr11	5255581	5255582	rs35152987	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	11p15.4	HBD, HBB, HBBP1, HBG1, HBG2, HBE1	rs35152987-A	0.004	4E-86	(HbA2, Sardinian)	2.182	[1.97-2.40] percentage decrease	Illumina [~ 10900000] (imputed)	N
625	chr11	5258591	5258592	rs4402323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.4		rs4402323-?	NR	1E-46				NR [~ 8900000] (imputed)	N
625	chr11	5258851	5258852	rs4910735	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11p15.4	HBBP1	rs4910735-A	NR	2E-11		0.0254825	[0.018-0.033] unit increase	Affymetrix [16832071] (imputed)	N
625	chr11	5263852	5263853	rs16912210	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	HBBP1	rs16912210-G	0.08	4E-7	(Fat free mass change )	0.05	[NR] kg/y increase	Illumina [899892]	N
625	chr11	5263852	5263853	rs16912210	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	HBBP1	rs16912210-G	0.08	1E-6	(Protein deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
625	chr11	5263852	5263853	rs16912210	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.4	HBBP1	rs16912210-G	0.08	1E-6	(Protein )	0.04	[NR] kg/y increase	Illumina [899892]	N
625	chr11	5264145	5264146	rs2071348	20183929	Nuinoon M	2009-11-19	Hum Genet	A genome-wide association identified the common genetic variants  influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 Thai-Chinese ancestry mild cases, 383 Thai-Chinese ancestry severe cases	52 Indonesian ancestry mild cases, 122 Indonesian ancestry severe cases	11p15.4	HBE1, HBG2, HBD, HBBP1, HBG1	rs2071348-?	0.50	3E-15		4.05	[2.64-6.21]	Illumina [548094]	N
625	chr11	5268497	5268498	rs77346511	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on monocyte	2,909 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs77346511-T	0.07555	5E-8		0.2936	[0.19-0.4] unit decrease	Illumina [17952944] (imputed)	N
625	chr11	5290369	5290370	rs67385638	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	11p15.4	HBB, HBD, HBBP1, HBG1, HBG2, HBE1	rs67385638-G	0.236	1E-25	(HbF, Sardinian)	0.2038	[0.17-0.24] g/dl increase	Illumina [~ 10900000] (imputed)	N
625	chr11	5291735	5291736	rs12295181	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	11p15.4	OR51A1P, OR52Z1, OR51V1, HBB, HBD, HBBP1, HBG1, HBG2, HBE1	rs12295181-T	0.14	3E-6		0.39	[0.23-0.55] unit increase	Illumina [7797526] (imputed)	N
625	chr11	5291735	5291736	rs12295181	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	11p15.4	OR51A1P, OR52Z1, OR51V1, HBB, HBD, HBBP1, HBG1, HBG2, HBE1, OR51AB1P, OR51B4, OR51B3P, OR51B2, OR51B8P, OR51B5, OR51B6	rs12295181-T	0.14	1E-7		0.37	[0.23-0.51] unit increase	Illumina [7797256] (imputed)	N
625	chr11	5291871	5291872	rs10768737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs10768737-T	0.55182	3E-51				Affymetrix, Illumina [22063850] (imputed)	N
625	chr11	5291871	5291872	rs10768737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.4	NR	rs10768737-T	0.553145	7E-52		0.028738	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
625	chr11	5294144	5294145	rs11036562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs11036562-A	0.437013	2E-43		0.031140119	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
625	chr11	5297428	5297429	rs112176573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11p15.4	HBE1, HBG2	rs112176573-A	0.2825	7E-12		0.02809104	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
625	chr11	5303062	5303063	rs2213169	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	11p15.4	NR	rs2213169-?	NR	2E-8		0.1524028	[0.099-0.206] unit increase	Illumina [27815891] (imputed)	N
625	chr11	5303062	5303063	rs2213169	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	11p15.4	HBE1, HBD, HBBP1, HBG1, HBB	rs2213169-T	0.1362	1E-13	(AA)	0.2227	[0.16-0.28] unit increase	Illumina [544917]	N
625	chr11	5303062	5303063	rs2213169	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	11p15.4	HBE1, HBD, HBBP1, HBG1, HBB	rs2213169-T	0.1362	5E-11	(AA, HCT)	0.4471	[0.31-0.58] unit decrease	Illumina [544917]	N
625	chr11	5306508	5306509	rs4910742	22291609	Naitza S	2012-01-26	PLoS Genet	A genome-wide association scan on the levels of markers of inflammation in Sardinians reveals associations that underpin its complex regulation.	Inflammatory biomarkers	4,694 Sardinian individuals	1,392 Sardinian individuals	11p15.4	HBB	rs4910742-G	0.066	2E-9	(ESR)			Affymetrix [~ 1900000] (imputed)	N
625	chr11	5306508	5306509	rs4910742	18245381	Uda M	2008-02-05	Proc Natl Acad Sci U S A	Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia.	Fetal hemoglobin levels	4,305 European ancestry individuals	521 European ancestry individuals	11p15.4	HBB	rs4910742-A	0.93	2E-21		0.58	[NR] unit decrease	Affymetrix [362129]	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469687	5E-12		0.015574153	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469664	4E-13		0.01637959	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469807	7E-24		0.022657573	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469717	2E-24		0.023144757	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469756	3E-9		0.013392698	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5314916	5314917	rs7928927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs7928927-T	0.469751	4E-10		0.014105189	[0.0097-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr11	5319207	5319208	rs6578598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.4		rs6578598-G	NR	3E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
625	chr11	5319207	5319208	rs6578598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	HBE1, HBG2	rs6578598-G	0.46687	4E-9		0.0130263	[0.009-0.0171] unit increase	Affymetrix [93095623] (imputed)	N
625	chr11	5319207	5319208	rs6578598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.4		rs6578598-?	NR	5E-8				NR [~ 8900000] (imputed)	N
625	chr11	5319456	5319457	rs185705069	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	11p15.4		rs185705069-A	0.957923	8E-6		0.0274184	[0.015-0.04] unit decrease	Illumina [13900000] (imputed)	N
625	chr11	5328682	5328683	rs557129696	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Hemoglobin	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11p15.4	HBG2, HBE1, AC104389.28	rs557129696-G	0.004	5E-11	(Pomak)	2.027	[1.42-2.63] unit decrease	Illumina [at least 13541454] (imputed)	N
625	chr11	5342425	5342426	rs7482428	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	11p15.4	OR51B2, OR51B4, OR51B5, OR51B6	rs7482428-?	NR	2E-7		1.440507	NR	Affymetrix, Illumina [7062950] (imputed)	N
625	chr11	5342425	5342426	rs7482428	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	11p15.4	OR51B2, OR51B4, OR51B5, OR51B6	rs7482428-?	NR	4E-7		1.4643433	NR	Affymetrix, Illumina [7062950] (imputed)	N
625	chr11	5358084	5358085	rs547260160	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs547260160-T	NR	6E-22	(conditional)	6.38	[5.09-7.67] unit decrease	Illumina [97506867]	N
625	chr11	5358084	5358085	rs547260160	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs547260160-T	NR	3E-20	(conditional)	2.41	[1.9-2.92] unit decrease	Illumina [94681438]	N
625	chr11	5362353	5362354	rs551800558	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs551800558-T	NR	2E-9	(conditional)	0.67	[0.45-0.89] unit decrease	Illumina [110351653]	N
625	chr11	5373250	5373251	rs5006884	20018918	Solovieff N	2009-12-16	Blood	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases	11p15.4	OR51B5, OR51B6	rs5006884-A	0.25	3E-8	(African)	0.16	[NR] unit increase	Illumina [~ 600000]	N
626	chr11	5376171	5376172	rs535388418	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs535388418-A	NR	7E-11	(conditional)	1.51	[1.06-1.96] unit increase	Illumina [76131582]	N
626	chr11	5385203	5385204	rs149728699	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.4		rs149728699-A	0.03493	2E-9		0.4437	[0.3-0.59] unit decrease	Illumina [18030638] (imputed)	N
626	chr11	5429768	5429769	rs770182365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	AC104389.28, HBE1, HBG2	rs770182365-G	2.05000000000011E-4	2E-13		0.8002152	[0.59-1.01] unit decrease	Affymetrix [93095623] (imputed)	N
626	chr11	5429768	5429769	rs770182365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	AC104389.28, HBE1, HBG2	rs770182365-G	2.05000000000011E-4	3E-9		0.65014344	[0.44-0.86] unit decrease	Affymetrix [93095623] (imputed)	N
626	chr11	5443892	5443893	rs10838094	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	11p15.4	OR51Q1	rs10838094-A	0.4106	7E-12		0.2761	[-0.11649-0.66869]	Illumina [281811]	N
626	chr11	5443892	5443893	rs10838094	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	11p15.4	OR51Q1	rs10838094-A	0.41059999999999997	8E-35		0.2071	[-0.06848-0.48268]	Illumina [281811]	N
626	chr11	5443892	5443893	rs10838094	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	11p15.4	OR51Q1	rs10838094-A	0.4106	9E-18		0.1089	[-0.50517-0.72297]	Illumina [281811]	N
626	chr11	5443892	5443893	rs10838094	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (adult)	65 European ancestry cases, 5,606 European ancestry controls	NA	11p15.4	OR51Q1	rs10838094-A	0.4106	1E-9		0.2393	[-0.26109-0.73969]	Illumina [281811]	N
626	chr11	5443892	5443893	rs10838094	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	11p15.4	OR51Q1	rs10838094-A	0.4106	2E-25		0.1646	[-0.22152-0.55072]	Illumina [281811]	N
626	chr11	5464315	5464316	rs551956132	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs551956132-C	NR	1E-9	(conditional)	0.37	[0.25-0.49] unit increase	Illumina [92652022]	N
626	chr11	5464315	5464316	rs551956132	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs551956132-C	NR	1E-29	(conditional)	8.37	[6.92-9.82] unit decrease	Illumina [97506867]	N
626	chr11	5464315	5464316	rs551956132	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs551956132-C	NR	4E-27	(conditional)	3.18	[2.61-3.75] unit decrease	Illumina [94681438]	N
626	chr11	5471745	5471746	rs7948471	23406172	Milton JN	2013-02-14	Br J Haematol	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African ancestry, West African ancestry and Afro-Caribbean individuals, 745 individuals	11p15.4	OR51I1, OR51I2	rs7948471-A	.21	3E-10		0.26	[0.18-0.34] unit decrease	Illumina [569554]	N
626	chr11	5474837	5474838	rs2030094	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.4	OR51I2	rs2030094-?		4E-6				Illumina [4322238] (imputed)	N
627	chr11	5518155	5518156	rs372091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	11p15.4	NR	rs372091-G	NR	8E-12		0.2217	[0.16-0.29] unit increase	Affymetrix [9000000] (imputed)	N
627	chr11	5518155	5518156	rs372091	22895189	Timmann C	2012-08-15	Nature	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	11p15.4	HBB	rs372091-C	0.972	6E-14		2.17	[NR]	Affymetrix [4205739] (imputed)	N
627	chr11	5525542	5525543	rs317787	33035477	Gisladottir RS	2020-09-25	Curr Biol	Sequence Variants in TAAR5 and Other Loci Affect Human Odor Perception and Naming.	Odorant perception	9,122 Icelandic ancestry individuals	2,204 Icelandic ancestry individuals	11p15.4	NR	rs317787-T	0.322	5E-17	(Cinnamon naming problem)	0.75	[0.70-0.80]	Illumina [36500000] (imputed)	N
627	chr11	5529138	5529139	rs2234456	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	11p15.4		rs2234456-?	NR	1E-6				Illumina [1365315]	N
627	chr11	5536536	5536537	rs393044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	11p15.4	NR	rs393044-C	NR	2E-10		0.1713	[0.12-0.22] unit increase	Affymetrix [9000000] (imputed)	N
627	chr11	5548569	5548570	rs75758457	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs75758457-A	NR	1E-12	(conditional)	1.15	[0.84-1.46] unit increase	Illumina [76131582]	N
627	chr11	5565897	5565909	rs763972480	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs763972480-T	NR	1E-22	(conditional)	7.54	[6.03-9.05] unit decrease	Illumina [97506867]	N
627	chr11	5565897	5565909	rs763972480	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs763972480-T	NR	1E-20	(conditional)	2.86	[2.25-3.47] unit decrease	Illumina [94681438]	N
627	chr11	5571896	5571897	rs396341	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p15.4	OR52H1	rs396341-T	0.2644	6E-14		0.003	[0.0022-0.0038] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
627	chr11	5575975	5575976	rs434320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.4		rs434320-T	NR	4E-18		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
627	chr11	5576614	5576615	rs13328868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p15.4		rs13328868-G	NR	7E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
627	chr11	5577695	5577696	rs7121082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.4	NR	rs7121082-A	NR	2E-11		0.0211	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
627	chr11	5577695	5577696	rs7121082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.4	NR	rs7121082-A	NR	2E-12		0.0221	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
627	chr11	5578557	5578558	rs1541937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p15.4	OR52H1	rs1541937-A	0.6395	4E-18		0.0029	[0.0021-0.0037] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
627	chr11	5600952	5600953	rs7110894	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	11p15.4		rs7110894-C	0.01136	6E-7		2.348	[1.679-3.284]	Affymetrix [7975321] (imputed)	N
627	chr11	5600952	5600953	rs7110894	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	11p15.4		rs7110894-C	0.01136	2E-6		2.068	[1.529-2.798]	Affymetrix [7975321] (imputed)	N
627	chr11	5602604	5602605	rs2341433	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Malate levels	1,937 individuals	NA	11p15.4	OR52B6, HBG2, AC015691.13	rs2341433-A	0.431	8E-7		0.1658	[0.1-0.232] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
627	chr11	5621462	5621463	rs7121553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.4	NR	rs7121553-G	NR	6E-10		0.0322	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
627	chr11	5622183	5622184	rs7125514	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11p15.4	NR	rs7125514-A	0.365	9E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
627	chr11	5625602	5625603	rs7108470	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.4	NR	rs7108470-G	0.423505770703473	3E-6	(IGP31)	0.1516	[0.088-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
627	chr11	5625846	5625847	rs3751006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs3751006-?	NR	4E-8				NR [~ 8900000] (imputed)	N
628	chr11	5636699	5636701	rs74439372	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	11p15.4	NR	rs74439372-GAC		2E-7		0.1614	[0.1-0.22] SD units increase	NR [10700000] (imputed)	N
628	chr11	5642982	5642983	rs192560487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	TRIM6-TRIM34, TRIM34, HBG2, AC015691.13	rs192560487-C	1.98000000000031E-4	2E-12		0.68753225	[0.5-0.88] unit increase	Affymetrix [93095623] (imputed)	N
628	chr11	5642982	5642983	rs192560487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11p15.4	TRIM6-TRIM34, TRIM34, HBG2, AC015691.13	rs192560487-C	1.98000000000031E-4	1E-12		0.691237	[0.5-0.88] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr11	5642982	5642983	rs192560487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.4	NR	rs192560487-C	2.13E-4	4E-13		0.631545	[0.46-0.8] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
628	chr11	5642982	5642983	rs192560487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11p15.4	NR	rs192560487-C	2.13E-4	5E-13		0.649996	[0.47-0.83] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
628	chr11	5658609	5658610	rs200956582	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	11p15.4	TRIM6, TRIM6-TRIM34	rs200956582-?	NR	9E-9	(EA)	0.4777	[0.32-0.64] unit increase	Illumina [~ 9000000] (imputed)	N
628	chr11	5658609	5658610	rs200956582	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	11p15.4	TRIM6, TRIM6-TRIM34	rs200956582-?	NR	8E-10		0.4689	[0.32-0.62] unit increase	Illumina [~ 9000000] (imputed)	N
628	chr11	5671622	5671623	rs11038546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.4	NR	rs11038546-C	NR	4E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
628	chr11	5671622	5671623	rs11038546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11p15.4	NR	rs11038546-C	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
628	chr11	5677157	5677158	rs7108486	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11p15.4	TRIM5	rs7108486-T	0.976279	2E-8		0.0389569	[0.025-0.053] unit increase	Affymetrix [NR] (imputed)	N
628	chr11	5677157	5677158	rs7108486	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11p15.4	TRIM5	rs7108486-T	0.976279	4E-10		0.0433041	[0.03-0.057] unit increase	Affymetrix [NR] (imputed)	N
628	chr11	5681851	5681852	rs755157567	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs755157567-T	NR	6E-10	(conditional)	7.9	[5.39-10.41] unit decrease	Illumina [97506867]	N
628	chr11	5684071	5684072	rs77628708	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.4	TRIM5	rs77628708-T	0.9436	3E-6		0.0682	[0.04-0.097] unit increase	NR [8041861] (imputed)	N
628	chr11	5688023	5688024	rs11820502	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.4	NR	rs11820502-C	0.287788676326349	2E-6	(IGP30)	0.1821	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
628	chr11	5688023	5688024	rs11820502	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.4	NR	rs11820502-C	0.287504188780053	3E-6	(IGP27)	0.1762	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
628	chr11	5688023	5688024	rs11820502	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.4	NR	rs11820502-C	0.287492850713013	1E-6	(IGP25)	0.1836	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
628	chr11	5688682	5688683	rs58270597	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11p15.4	TRIM5	rs58270597-?	NR	1E-9		0.02703	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
628	chr11	5690543	5690544	rs12271225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.4	TRIM5	rs12271225-T	0.1388	2E-12		0.03671394	[0.026-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
628	chr11	5691527	5691528	rs71490145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	TRIM5	rs71490145-T	0.096983	2E-9		0.025052961	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr11	5693546	5693547	rs2880345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	TRIM5	rs2880345-T	0.842793	3E-14		0.024614708	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr11	5698454	5698455	rs12806645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	TRIM5	rs12806645-A	0.360266	1E-9		0.014682993	[0.0099-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	4E-8		0.042535	[0.027-0.058] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-8		0.0418783	[0.027-0.057] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930834	1E-8		0.0458751	[0.03-0.062] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	7E-9		0.0455164	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-8		0.0452858	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-10		0.0505313	[0.035-0.066] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930764	1E-11		0.0548155	[0.039-0.071] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-10		0.0487074	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	4E-13		0.0563932	[0.041-0.072] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	1E-9		0.0479059	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	1E-9		0.048314	[0.033-0.064] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	4E-8		0.0413471	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	1E-8		0.0444549	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930764	1E-8		0.0445647	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-11		0.0506912	[0.036-0.066] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-9		0.045984	[0.031-0.061] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-13		0.0544428	[0.04-0.069] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-10		0.0496033	[0.034-0.065] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	4E-9		0.0440674	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-9		0.0469233	[0.031-0.062] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-10		0.0505306	[0.035-0.066] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-10		0.0487122	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-8		0.0453528	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-9		0.0471408	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	3E-9		0.0462048	[0.031-0.061] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930834	4E-8		0.0431128	[0.028-0.059] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11p15.4		rs11601507-C	0.930832	2E-10		0.0496322	[0.034-0.065] unit decrease	NR [11722792] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	1E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	3E-10		0.0249	[0.017-0.033] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	1E-62		0.0672	[0.059-0.075] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	2E-15		0.0335	[0.025-0.042] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	3E-21		0.0367	[0.029-0.044] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
628	chr11	5701073	5701074	rs11601507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11p15.4		rs11601507-A	NR	2E-24		0.0386	[0.031-0.046] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11p15.4	TRIM5	rs11601507-C	0.930677	3E-78		0.00828498	[0.0074-0.0092] unit decrease	Affymetrix [13995440] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11p15.4	TRIM5	rs11601507-C	0.930684	2E-27		0.00809281	[0.0066-0.0096] unit decrease	Affymetrix [13995440] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11p15.4	TRIM5	rs11601507-A	0.068	1E-62		16.7	z-score increase	Affymetrix [4311822] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p15.4	TRIM5	rs11601507-A	0.068	5E-20		9.16	z-score increase	Affymetrix [4314223] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11p15.4	TRIM5	rs11601507-A	0.068	7E-24		10.1	z-score increase	Affymetrix [4312306] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11p15.4	TRIM5	rs11601507-A	0.071305	2E-6		1.07	[1.04-1.10]	NR [8126035] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.4	TRIM5	rs11601507-?		2E-11		0.055	[0.039-0.071] unit decrease	Illumina [31500000] (imputed)	N
628	chr11	5701073	5701074	rs11601507	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p15.4	TRIM5	rs11601507-?	NR	4E-15		0.0756946	[0.057-0.095] unit increase	Illumina [4804024] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	TRIM5	rs11601507-A	0.068951	1E-9		0.027115792	[0.018-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	TRIM5	rs11601507-A	0.068935	4E-20		0.042059604	[0.033-0.051] unit increase	Affymetrix [93095623] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs11601507-A	0.0669324	2E-24				Affymetrix, Illumina [24588908] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.4	NR	rs11601507-A	0.069824	3E-21		0.034485	[0.027-0.042] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p15.4	NR	rs11601507-C	0.930663	3E-40		0.0493409	[0.042-0.057] unit decrease	Affymetrix [15000001]	N
628	chr11	5701073	5701074	rs11601507	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11p15.4	TRIM5	rs11601507-C	0.930533	2E-15		0.0322609	[0.024-0.04] unit decrease	Affymetrix [NR] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.4	TRIM5	rs11601507-C	0.930383	9E-12		0.0251639	[0.018-0.032] unit increase	Affymetrix [NR] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11p15.4	TRIM5	rs11601507-C	0.930562	9E-25		0.0415074	[0.034-0.049] unit decrease	Affymetrix [NR] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.4	TRIM5	rs11601507-C	0.930316	7E-18		0.0327527	[0.025-0.04] unit increase	Affymetrix [NR] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11p15.4	TRIM5	rs11601507-?	NR	3E-24		0.0509	[0.042-0.06] unit increase	Affymetrix [5701386] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.4	NR	rs11601507-A	0.06916500000000003	1E-25		0.0163726	[0.013-0.02] unit increase	Affymetrix [16582909] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p15.4	NR	rs11601507-A	0.06916900000000004	3E-15		0.0183405	[0.014-0.023] unit increase	Affymetrix [16585854] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p15.4	NR	rs11601507-A	0.06915000000000004	7E-12		0.0154918	[0.011-0.02] unit increase	Affymetrix [16582621] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.4	NR	rs11601507-A	0.06916500000000003	3E-18		0.0153966	[0.012-0.019] unit increase	Affymetrix [16582965] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p15.4	NR	rs11601507-A	0.06916900000000004	4E-9		0.0161018	[0.011-0.022] unit increase	Affymetrix [16585866] (imputed)	N
628	chr11	5701073	5701074	rs11601507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p15.4	NR	rs11601507-A	0.06915000000000004	4E-11		0.0155374	[0.011-0.02] unit increase	Affymetrix [16582614] (imputed)	N
628	chr11	5701073	5701074	rs11601507	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.4	NR	rs11601507-C	NR	7E-9		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
628	chr11	5701073	5701074	rs11601507	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.4	NR	rs11601507-C	0.935	7E-8	(EA)	0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
628	chr11	5701073	5701074	rs11601507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11p15.4	TRIM5, TRIM22	rs11601507-A	0.0739	6E-13		0.0782	[0.057-0.099] unit increase	Affymetrix [at least 7947838] (imputed)	N
628	chr11	5701073	5701074	rs11601507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.4	TRIM5, TRIM22	rs11601507-A	0.0747	2E-12		0.0838	[0.06-0.107] unit increase	NR [8041861] (imputed)	N
628	chr11	5701073	5701074	rs11601507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11p15.4	TRIM5, TRIM22	rs11601507-A	0.075	2E-12		0.084	[0.06-0.108] unit increase	Affymetrix [7947838] (imputed)	N
628	chr11	5701073	5701074	rs11601507	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.4	TRIM5	rs11601507-A	0.0699	6E-19		0.06304979	[0.049-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
628	chr11	5701280	5701281	rs3740996	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p15.4	NR	rs3740996-A	NR	9E-25		0.0368	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
628	chr11	5701408	5701409	rs3824949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p15.4		rs3824949-C	NR	2E-20		0.0177	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
628	chr11	5701408	5701409	rs3824949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	TRIM5	rs3824949-C	0.55686	1E-16		0.021134349	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
628	chr11	5701408	5701409	rs3824949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs3824949-G	0.45242	4E-74				Affymetrix, Illumina [17210439] (imputed)	N
628	chr11	5701408	5701409	rs3824949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.4	NR	rs3824949-G	0.443002	3E-71		0.034603	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
628	chr11	5701408	5701409	rs3824949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.4	TRIM5	rs3824949-C	0.557	6E-24		0.03697798	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
628	chr11	5701882	5701883	rs17305868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11p15.4		rs17305868-G	0.453804	2E-12		0.0233992	[0.017-0.03] unit increase	Illumina [13478928] (imputed)	N
628	chr11	5701882	5701883	rs17305868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	11p15.4	NR	rs17305868-A	0.549663	2E-12		0.026194	[0.019-0.033] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
628	chr11	5701882	5701883	rs17305868	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	11p15.4	TRIM5	rs17305868-?	NR	9E-10		0.02593	[0.018-0.034] unit increase novel	Illumina [6108953] (imputed)	N
628	chr11	5714450	5714451	rs16926648	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	11p15.4		rs16926648-T	NR	3E-6		0.473	unit increase	Illumina [NR] (imputed)	N
628	chr11	5719666	5719667	rs2291842	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11p15.4	NR	rs2291842-?	NR	1E-11		6.784	NR z score increase	Illumina [at least 830937] (imputed)	N
629	chr11	5796761	5796762	rs7110476	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	11p15.4		rs7110476-G	NR	3E-6		0.8203		Illumina [up to 7574753] (imputed)	N
629	chr11	5827002	5827003	rs11039100	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p15.4	NR	rs11039100-?	NR	1E-6	(AA)	71.94	[68.37-75.51]	Illumina [905956]	N
629	chr11	5829083	5829084	rs1453414	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	11p15.4	intergenic	rs1453414-C	0.200985866449642	4E-6		1.2157		Illumina [7574753] (imputed)	N
629	chr11	5829083	5829084	rs1453414	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity and pharyngeal cancer	2,717 European ancestry oral cavity cancer cases, 273 oral cavity cancer cases, 2,506 European ancestry oropharynx cancer cases, 135 oropharynx cancer cases, 305 European and unknown ancestry hypopharynx cancer cases, 73 European and unknown ancestry overlapping cases, 25 European and unknown ancestry cases, 5,984 European ancestry controls, 601 controls	NA	11p15.4	OR52N2	rs1453414-C	0.2	5E-8		1.1945		Illumina [7574753] (imputed)	N
629	chr11	5835523	5835524	rs116006800	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	6,647 African American individuals	NA	11p15.4	OR52N2	rs116006800-T	0.0222	2E-6		0.1445	[0.088-0.201] unit decrease	Affymetrix, Illumina [26614666] (imputed)	N
629	chr11	5835523	5835524	rs116006800	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	11p15.4	OR52N2	rs116006800-T	0.0037	3E-6		0.1977	[0.12-0.27] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
629	chr11	5845480	5845481	rs72896141	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	11p15.4	TRIM5	rs72896141-?		6E-7	(BDE-28)	0.4	[0.24-0.56] unit increase	Affymetrix [629686]	N
629	chr11	5860095	5860096	rs138242149	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	11p15.4		rs138242149-?	0.008	7E-6		0.2927	[0.16-0.42] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
629	chr11	5860095	5860096	rs138242149	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	11p15.4		rs138242149-?	0.008	7E-10		2.1675	[1.48-2.86] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
629	chr11	5860095	5860096	rs138242149	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	11p15.4		rs138242149-?	0.007	9E-10		2.663	[1.81-3.51] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
629	chr11	5865577	5865577	rs71468072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	TRIM5	rs71468072-ATAT	0.336152	1E-18		0.021194369	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
630	chr11	5906202	5906203	rs11823828	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	11p15.4	OR52E4	rs11823828-T	0.634	4E-21		1.54		Illumina [up to 244000]	N
630	chr11	5906202	5906203	rs11823828	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	11p15.4	OR52E4	rs11823828-G		2E-12		1.43		Illumina [31245]	N
630	chr11	5906202	5906203	rs11823828	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Intracerebral hemorrhage	261 Japanese ancestry intracerebral hemorrhage cases, 176 Japanese ancestry subarachnoid hemorrhage cases, 5,742 Japanese ancestry controls	NA	11p15.4	OR52E4	rs11823828-G	0.36	2E-6	(subarachnoid)	1.82		Illumina [30970]	N
630	chr11	5916210	5916211	rs7940165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	TRIM5	rs7940165-G	0.38048	1E-10		0.015058123	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
630	chr11	5931841	5931842	rs916216189	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs916216189-A	NR	3E-11	(conditional)	12.21	[8.6-15.82] unit decrease	Illumina [97506867]	N
630	chr11	5931841	5931842	rs916216189	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.4		rs916216189-A	NR	8E-10	(conditional)	4.39	[3-5.78] unit decrease	Illumina [94681438]	N
630	chr11	5959756	5959757	rs3858526	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.4	TRIM5	rs3858526-C	0.27	3E-6	(KvDMR)			Illumina [515966]	N
630	chr11	6019145	6019146	rs142375188	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRT7	5,361 Icelandic ancestry individuals	NA	11p15.4		rs142375188-C	0.01627	4E-71		1.25699	[1.12-1.4] unit increase	Illumina [7506463] (imputed)	N
630	chr11	6019185	6019186	rs4758351	32019797	Wojcik GL	2020-02-04	mBio	Genome-Wide Association Study of Cryptosporidiosis in Infants Implicates PRKCA.	Cryptosporidiosis	183 Bangladeshi ancestry cases, 873 Bangladeshi ancestry controls	NA	11p15.4	Intergenic	rs4758351-A	NR	4E-7		2.39	[NR]	Illumina [6504706] (imputed)	N
631	chr11	6095815	6095816	rs202083337	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	11p15.4		rs202083337-A	0.01416	6E-6		2.146	[1.54199999999999-2.986]	Affymetrix [7975321] (imputed)	N
631	chr11	6095815	6095816	rs202083337	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	11p15.4		rs202083337-A	0.01416	7E-6		2.116	[1.527-2.933]	Affymetrix [7975321] (imputed)	N
631	chr11	6120685	6120686	rs35829351	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	11p15.4	NR	rs35829351-G	0.449	3E-7		0.11	[0.071-0.149] unit increase	Illumina [~ 8400000] (imputed)	N
632	chr11	6192461	6192462	rs16909443	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	178,556 British ancestry men	NA	11p15.4	RP11-290F24.3	rs16909443-T	NR	4E-8		0.04	[0.026-0.054] unit decrease	NR [NR] (imputed)	N
632	chr11	6239343	6239344	rs3750944	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p15.4	NA	rs3750944-A	0.5635	5E-9		0.0103	[0.0068-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
632	chr11	6255937	6255938	rs80264592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.4		rs80264592-T	0.001327	8E-22		0.53011	[0.42-0.64] unit decrease	Illumina [13476266] (imputed)	N
632	chr11	6255937	6255938	rs80264592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11p15.4		rs80264592-T	0.001339	3E-20		0.511369	[0.4-0.62] unit decrease	Illumina [13476299] (imputed)	N
632	chr11	6268545	6268546	rs12792379	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	11p15.4	CCKBR, CNGA4	rs12792379-A	NR	2E-8		1.0383158	[1.02-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
632	chr11	6272676	6272677	rs11040813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11p15.4	Intergenic	rs11040813-T	0.7613	6E-11	(MTAG)	0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
632	chr11	6272676	6272677	rs11040813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11p15.4	Intergenic	rs11040813-T	0.7613	3E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
632	chr11	6272676	6272677	rs11040813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p15.4	Intergenic	rs11040813-T	0.7609	3E-9	(MTAG)	0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
632	chr11	6273743	6273744	rs10500661	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	11p15.4	NR	rs10500661-T	0.8	4E-14		0.9	NR	NR [8546065] (imputed)	N
632	chr11	6273743	6273744	rs10500661	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	11p15.4	NR	rs10500661-T	0.8	1E-11		0.96		NR [8546065] (imputed)	N
632	chr11	6289117	6289118	rs2929184	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p15.4	CCKBR	rs2929184-A	0.77	5E-10		0.1164	[0.08-0.153] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
633	chr11	6297695	6297696	rs10839537	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	11p15.4	CCKBR, CNGA4	rs10839537-?	NR	2E-6		2.18		Illumina [6778521] (imputed)	N
633	chr11	6302202	6302203	rs11600751	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	11p15.4	CCKBR, CAVIN3	rs11600751-?	NR	3E-6		1.55	1.37-1.73	Illumina [7605010] (imputed)	N
633	chr11	6306883	6306884	rs7129092	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	11p15.4	NR	rs7129092-A	NR	6E-6		2.94	[1.85-4.69]	Illumina [13976150] (imputed)	N
633	chr11	6321931	6321932	rs139456652	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-495 abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs139456652-A	0.0561847	8E-9		0.325307	[0.21-0.44] unit increase	Illumina [7980478] (imputed)	N
633	chr11	6328471	6328472	rs10500669	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	11p15.4	PRKCDBP	rs10500669-?		5E-6	(PCB199)	0.17	[0.092-0.248] unit increase	Affymetrix [629686]	N
633	chr11	6328471	6328472	rs10500669	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	11p15.4	PRKCDBP	rs10500669-?		3E-7	(PCB187)	0.2	[0.12-0.28] unit increase	Affymetrix [629686]	N
633	chr11	6328471	6328472	rs10500669	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	11p15.4	PRKCDBP	rs10500669-?		3E-7	(PCB187)	0.2	[0.12-0.28] unit increase	Affymetrix [629686]	N
633	chr11	6328471	6328472	rs10500669	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	11p15.4	PRKCDBP	rs10500669-?		2E-6	(PCB194)	0.15	[0.091-0.209] unit increase	Affymetrix [629686]	N
633	chr11	6328471	6328472	rs10500669	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	11p15.4	PRKCDBP	rs10500669-?		1E-6	(PCB196/203)	0.17	[0.11-0.23] unit increase	Affymetrix [629686]	N
633	chr11	6342328	6342329	rs1488864	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	11p15.4	PRKCDBP	rs1488864-A	0.0932	1E-6		1.295	[NR] unit increase	Illumina [1216189] (imputed)	N
633	chr11	6375808	6375809	rs10769691	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.4	PRKCDBP, SMPD1	rs10769691-A	0.072	2E-7		3.13	[2-4.9]	Illumina [1556551]	N
633	chr11	6415462	6415463	rs1050239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPD1	5,368 Icelandic ancestry individuals	NA	11p15.4		rs1050239-A	0.2961	8E-71		0.346541	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
633	chr11	6415462	6415463	rs1050239	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11p15.4	SMPD1	rs1050239-A	0.2236	4E-13	(SMPD1)	0.6146	[0.45-0.78] unit decrease	Illumina [8683751] (imputed)	N
633	chr11	6415462	6415463	rs1050239	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.4	SMPD1	rs1050239-G	0.71546875	2E-31	(SMPD1, 10818_36_3)	0.30974165	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
634	chr11	6443671	6443672	rs34038940	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.4	APBB1	rs34038940-A	0.247	3E-18	(Muellerian-inhibiting factor, AMH.4923.79.1)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
634	chr11	6453331	6453332	rs17242666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMH	5,357 Icelandic ancestry individuals	NA	11p15.4		rs17242666-C	0.2671	1E-11		0.141646	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
634	chr11	6460025	6460026	rs10500671	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.4	HPX	rs10500671-A	0.242	2E-16	(Fibronectin type III domain-containing protein 5, FNDC5.8041.5.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
634	chr11	6462086	6462087	rs35862450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FNDC5	5,357 Icelandic ancestry individuals	NA	11p15.4		rs35862450-A	0.2655	8E-14		0.153644	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
634	chr11	6522803	6522804	rs2555155	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11p15.4	FXC1, DNHD1	rs2555155-G	0.117	5E-6	(H19-ICR)			Illumina [515966]	N
634	chr11	6551315	6551316	rs10839572	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs10839572-?	NR	6E-8				Affymetrix [NR]	N
635	chr11	6656009	6656009	rs35447162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.4	DCHS1, RP11-732A19.6	rs35447162-GA	0.35624	3E-10		0.01493961	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
635	chr11	6664660	6664661	rs2659864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.4		rs2659864-T	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
635	chr11	6667352	6667353	rs937851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	DCHS1	rs937851-G	0.616432	2E-9		0.013657548	[0.0092-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr11	6673012	6673013	rs10742977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p15.4	NR	rs10742977-T	0.632007	8E-11		0.012477	[0.0087-0.0162] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
636	chr11	6713213	6713214	rs11040963	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	11p15.4		rs11040963-?	NR	7E-7		0.04	[0.024-0.056] unit decrease	Affymetrix [9906178] (imputed)	N
636	chr11	6713213	6713214	rs11040963	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	11p15.4		rs11040963-?	NR	2E-8		0.053	[0.033-0.073] unit decrease	Affymetrix [9906178] (imputed)	N
636	chr11	6721654	6721655	rs2345357	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	11p15.4	NR	rs2345357-?		4E-6		1.67	[1.34-2.09]	Illumina [539473] (imputed)	N
636	chr11	6729453	6729454	rs10839597	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	DCHS1	rs10839597-?	NR	5E-6	(PC 32:1)	0.15715395	[0.09-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
636	chr11	6750056	6750057	rs12799172	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	11p15.4	NR	rs12799172-?	0.64	5E-6	(PD1)	2.12	[NR]	Illumina [~ 1400000] (imputed)	N
636	chr11	6756573	6756574	rs4475903	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	OR2AG1	rs4475903-?	NR	6E-6	(glycine)	0.40291318	[0.23-0.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
636	chr11	6783400	6783401	rs4758132	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	11p15.4	OR2AG2, OR2AG1	rs4758132-?	NR	3E-6	(multivariate)			Perlegen [1871025] (imputed)	N
637	chr11	6885428	6885429	rs3889139	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	11p15.4	OR2D2, OR10A2, OR10A4, OR10A5	rs3889139-?	NR	2E-6		2.795	[1.65-3.94] unit increase (from TRACK-HD cohort)	Illumina [9650000] (imputed)	N
638	chr11	6962956	6962957	rs2857891	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	11p15.4	ZNF215	rs2857891-?		2E-6				Affymetrix, Illumina [1348798]	N
639	chr11	7176203	7176204	rs143666677	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRT7	5,361 Icelandic ancestry individuals	NA	11p15.4		rs143666677-G	0.01176	4E-65		1.44089	[1.28-1.61] unit increase	Illumina [7506463] (imputed)	N
639	chr11	7176203	7176204	rs143666677	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMH	5,357 Icelandic ancestry individuals	NA	11p15.4		rs143666677-G	0.01176	3E-31		1.01432	[0.84-1.19] unit increase	Illumina [7506463] (imputed)	N
639	chr11	7177850	7177851	rs10839732	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11p15.4	NR	rs10839732-C	0.7025	9E-6		0.0436	[0.024-0.063] unit decrease	Illumina [up to 1980188] (imputed)	N
640	chr11	7331407	7331408	rs74053707	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	11p15.4	SYT9	rs74053707-C	0.017	8E-6		1.84	[1.41-2.40]	Illumina [9327222] (imputed)	N
641	chr11	7355577	7355578	rs74471865	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	11p15.4	SYT9, MIR302E, OLFML1	rs74471865-A	0.06	4E-7		0.75	[0.46-1.04] unit decrease	Illumina [8446615] (imputed)	N
641	chr11	7367094	7367095	rs10769780	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	11p15.4	SYT9	rs10769780-?	NR	3E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
641	chr11	7396190	7396191	rs10769783	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p15.4	SYT9	rs10769783-?	NR	2E-7				Affymetrix [5486770] (imputed)	N
641	chr11	7396190	7396191	rs10769783	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	11p15.4	SYT9	rs10769783-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
641	chr11	7400565	7400566	rs66714249	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.4	intergenic	rs66714249-A	0.005	2E-6		8.66	[2.96-25.31]	Illumina [1556551]	N
641	chr11	7400789	7400790	rs1023996	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	11p15.4	SYT9	rs1023996-G	0.58	2E-6		1.32	[1.18-1.48]	Illumina [6220060] (imputed)	N
641	chr11	7464371	7464372	rs4076555	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.4	NR	rs4076555-C	0.336591107706174	7E-6	(IGP4)	0.1591	[0.09-0.229] unit decrease	Illumina [~ 2500000] (imputed)	N
642	chr11	7500282	7500283	rs80078009	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	11p15.4	SYT9, OLFML1, PPFIBP2	rs80078009-T	0.036	4E-6	(adjusted for severity)	2.05	[1.74-2.36]	Affymetrix, Illumina [~ 8500000] (imputed)	N
642	chr11	7541510	7541511	rs4078279	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11p15.4	PPFIBP2	rs4078279-?	NR	4E-8		1.0702055	NR	Affymetrix [9154080] (imputed)	N
642	chr11	7543518	7543519	rs11041426	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11p15.4	PPFIBP2	rs11041426-G	0.396936	2E-33				Affymetrix, Illumina [NR] (imputed)	N
642	chr11	7543518	7543519	rs11041426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.4		rs11041426-?	NR	7E-54				NR [~ 8900000] (imputed)	N
642	chr11	7543518	7543519	rs11041426	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p15.4	PPFIBP2	rs11041426-?	NR	1E-42		1.1164452	NR	Affymetrix [9154080] (imputed)	N
642	chr11	7543518	7543519	rs11041426	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	11p15.4	PPFIBP2	rs11041426-A	0.377	3E-37		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
642	chr11	7547586	7547587	rs61890184	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11p15.4	NR	rs61890184-A	NR	5E-16		1.082	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
642	chr11	7547586	7547587	rs61890184	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	11p15.4	NR	rs61890184-A	0.13	8E-7		1.149	[1.09-1.21]	Affymetrix, Illumina [10186136] (imputed)	N
642	chr11	7547586	7547587	rs61890184	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	11p15.4	PPFIBP2	rs61890184-A	NR	1E-7		1.11	[NR]	Illumina [20370935] (imputed)	N
642	chr11	7556576	7556577	rs12791447	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	11p15.4	PPFIBP2	rs12791447-C	0.136	4E-8		1.23	[NR]	Illumina [4550396] (imputed)	N
642	chr11	7564420	7564421	rs11820697	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	OLFML1	rs11820697-?	NR	5E-6	(glycine)	0.25294122	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
642	chr11	7568000	7568001	rs7105146	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (remission) in treatment resistant depression	255 European ancestry remitters, 272 European ancestry non-remitters	NA	11p15.4	NR	rs7105146-?		2E-6		2.216	[1.89-2.54]	NR [NR] (imputed)	N
642	chr11	7575744	7575745	rs10743026	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p15.4	PPFIBP2	rs10743026-C	0.7612	1E-6		0.0109	[0.0068-0.015] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
643	chr11	7624629	7624630	rs11605093	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	11p15.4	NR	rs11605093-G	0.8	4E-6		0.8	[NR]	Affymetrix [87696888] (imputed)	N
643	chr11	7668523	7668524	rs10839830	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	CYB5R2	rs10839830-?	NR	6E-6	(glycine)	0.14990726	[0.085-0.215] unit decrease	Affymetrix [at least 2500000] (imputed)	N
643	chr11	7701502	7701503	rs11041530	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.4	CYB5R2	rs11041530-C	0.11	6E-6	(SBP)	1.35	[0.86-1.84] unit decrease	Affymetrix, Illumina [~ 2420000] (imputed)	N
643	chr11	7708280	7708281	rs7932813	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	11p15.4	OVCH2	rs7932813-?	NR	5E-6				Affymetrix, Illumina [up to 512349]	N
643	chr11	7719584	7719585	rs142811167	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	11p15.4	OVCH2	rs142811167-?		5E-6		87.06	[12.84-590.36]	Illumina [NR] (imputed)	N
644	chr11	7775320	7775321	rs7129903	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p15.4	OR5P2	rs7129903-C	0.0856240359897172	4E-6	(G_Blautia_RNT)	0.17592	[0.1-0.25] unit decrease	Illumina [7711310] (imputed)	N
645	chr11	7874544	7874547	rs34375511	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11p15.4	NR	rs34375511-?	NR	6E-6		0.52	[0.48-0.56]	Illumina [539000] (imputed)	N
645	chr11	7904063	7904064	rs79110951	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	11p15.4		rs79110951-?	NR	7E-6				Illumina [7401356] (imputed)	N
645	chr11	7938305	7938306	rs72484727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11p15.4	OR10A6, OR10A3	rs72484727-?	NR	1E-8		0.00266746	[-0.00222-0.00756] unit increase	Affymetrix [25921788] (imputed)	N
645	chr11	7938305	7938306	rs72484727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11p15.4	OR10A6, OR10A3	rs72484727-?	NR	1E-8		0.0141863	[0.0093-0.0191] unit decrease	Affymetrix [25921788] (imputed)	N
645	chr11	7950796	7950797	rs4523689	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11p15.4	OR10A6	rs4523689-G		9E-9		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
645	chr11	7950796	7950797	rs4523689	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11p15.4	OR10A6	rs4523689-G	0.393	1E-8		0.0133	[0.0087-0.0179] unit decrease	Illumina [~ 250000] (imputed)	N
645	chr11	7950796	7950797	rs4523689	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p15.4	NR	rs4523689-G	0.399	2E-11		0.00733978	[0.0052-0.0095] unit decrease	NR [9732723] (imputed)	N
645	chr11	7950796	7950797	rs4523689	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	11p15.4	OR10A6	rs4523689-G	0.27	8E-9		0.012	[0.0061-0.0179] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
645	chr11	7950796	7950797	rs4523689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p15.4		rs4523689-?	NR	3E-8				NR [~ 8900000] (imputed)	N
645	chr11	7968358	7968359	rs878860	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11p15.4	NLRP10, OR10A3	rs878860-G	0.537	2E-22		1.31	[1.24-1.38]	Illumina [606164]	N
645	chr11	7969710	7969711	rs1079467	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	11p15.4	NLRP10	rs1079467-C	0.26	2E-6	(GEE model, both 3 and 6 months)	0.29	[0.17, 0.41] unit increase	Illumina [4253138] (imputed)	N
645	chr11	7982431	7982432	rs59039403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11p15.4		rs59039403-A	NR	1E-35		0.4776	[0.4-0.55] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
645	chr11	7982431	7982432	rs59039403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11p15.4		rs59039403-A	0.135099077	1E-35		0.4776405	[0.4-0.55] unit decrease	Illumina [13428180] (imputed)	N
645	chr11	7982431	7982432	rs59039403	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	11p15.4		rs59039403-?	NR	2E-35		0.52	[0.47-0.57]	Illumina [9900441] (imputed)	N
645	chr11	7982431	7982432	rs59039403	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	11p15.4		rs59039403-A	0.134053597	1E-25		0.594037	[0.538764127-0.654980409]	Illumina [8919992] (imputed)	N
646	chr11	8001446	8001447	rs10769859	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	11p15.4		rs10769859-G	NR	1E-6	(GLM)	2.9542	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
646	chr11	8005469	8005470	rs11041699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.4		rs11041699-A	NR	3E-12		0.0217	[0.016-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
646	chr11	8005469	8005470	rs11041699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.4		rs11041699-A	NR	1E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
646	chr11	8005469	8005470	rs11041699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	EIF3F	rs11041699-A	0.115125	1E-18		0.030743651	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
646	chr11	8005469	8005470	rs11041699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	EIF3F	rs11041699-A	0.115121	1E-16		0.0262336	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
646	chr11	8005469	8005470	rs11041699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.4	EIF3F	rs11041699-A	0.115128	4E-11		0.022840621	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
646	chr11	8005469	8005470	rs11041699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.4		rs11041699-?	NR	2E-9				NR [~ 8900000] (imputed)	N
646	chr11	8011186	8011187	rs11347938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	EIF3F	rs11347938-T	0.122446	1E-19		0.03111443	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
646	chr11	8014776	8014777	rs12420464	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	11p15.4	EIF3F	rs12420464-T	0.04	3E-6		0.38	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
646	chr11	8018551	8018552	rs10839961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs10839961-A	0.166058	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
646	chr11	8023736	8023737	rs7950331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7950331-G	0.170162	2E-15				Affymetrix, Illumina [24246363] (imputed)	N
646	chr11	8023736	8023737	rs7950331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.4	NR	rs7950331-G	0.168501	1E-11		0.017533	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
646	chr11	8046404	8046405	rs151332832	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	11p15.4	TUB	rs151332832-C	0.012	8E-6		2.78	[1.77-4.37]	Illumina [9327222] (imputed)	N
646	chr11	8046404	8046405	rs151332832	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	11p15.4	TUB	rs151332832-C	0.012	7E-6		3.58	[2.05-6.25]	Illumina [8672852] (imputed)	N
646	chr11	8046880	8046881	rs80078453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.4		rs80078453-T	NR	2E-14		0.0225	[0.017-0.028] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
646	chr11	8056912	8056913	rs55635402	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	11p15.4	TUB	rs55635402-G	19.33	4E-12	(additive)	0.96	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
646	chr11	8056912	8056913	rs55635402	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	11p15.4		rs55635402-?	NR	2E-11		6.7449627	z score decrease	Affymetrix [NR] (imputed)	N
646	chr11	8057386	8057387	rs10839968	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	11p15.4	NR	rs10839968-C	0.9392	7E-6		0.3109	[0.18-0.45] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
646	chr11	8080424	8080425	rs61879614	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	11p15.4	TUB	rs61879614-C	0.048	3E-6	(EA)	2.94	[NR]	Illumina [6728637] (imputed)	N
647	chr11	8151807	8151814	rs58805410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11p15.4		rs58805410-A	5.0E-6	5E-8		6.23117	[4-8.46] unit increase	Illumina [13478778] (imputed)	N
647	chr11	8214428	8214429	rs74052484	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.4	NR	rs74052484-G	0.02439	1E-8	(OAT)	0.04984	NR unit increase	Illumina [1671387] (imputed)	N
647	chr11	8243797	8243798	rs11041816	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p15.4	LMO1	rs11041816-A	0.5212	2E-7		3.29E-4	[-0.00099-0.00165] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
647	chr11	8243797	8243798	rs11041816	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p15.4	LMO1	rs11041816-A	0.5244	7E-7		0.0152	[0.0091-0.0213] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
647	chr11	8250142	8250143	rs7952320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p15.4		rs7952320-C	0.774306	4E-10		0.0152233	[0.01-0.02] unit increase	Illumina [13479295] (imputed)	N
647	chr11	8250142	8250143	rs7952320	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.4	LMO1	rs7952320-?	NR	2E-8		0.019280579	[0.013-0.026] unit increase	Illumina [27896057] (imputed)	N
647	chr11	8250810	8250811	rs4758317	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		11p15.4	LMO1	rs4758317-?	0.42	7E-7		0.08	[0.041-0.119] unit decrease	Illumina [4058415] (imputed)	N
647	chr11	8252852	8252853	rs110419	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11p15.4	NR	rs110419-G	0.48836286696641	3E-7				NR [9276018] (imputed)	N
647	chr11	8252852	8252853	rs110419	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11p15.4	LMO1	rs110419-A	0.5056	2E-6	(EA)	0.2251	[0.13-0.32] mmHg increase	Illumina [242296]	N
647	chr11	8252852	8252853	rs110419	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11p15.4	LMO1	rs110419-A	0.481	7E-7		0.134	mmHg increase	Illumina [242296]	N
647	chr11	8252852	8252853	rs110419	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	11p15.4	LMO1	rs110419-A	0.489	1E-13		1.32	[NR]	Illumina [426697]	N
647	chr11	8252852	8252853	rs110419	21124317	Wang K	2010-12-01	Nature	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	11p15.4	LMO1	rs110419-A	0.49	5E-16		1.34	[1.25-1.44]	Illumina [480279]	N
647	chr11	8255407	8255408	rs2168101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	11p15.4		rs2168101-C	0.691764	2E-10		0.0291217	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
647	chr11	8255407	8255408	rs2168101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	11p15.4		rs2168101-C	0.691775	2E-9		0.0276807	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
647	chr11	8255407	8255408	rs2168101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	11p15.4		rs2168101-C	0.691807	1E-11		0.0295402	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
647	chr11	8255407	8255408	rs2168101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	11p15.4		rs2168101-C	0.691714	3E-46		0.0658561	[0.057-0.075] unit increase	NR [11722792] (imputed)	N
647	chr11	8255407	8255408	rs2168101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	11p15.4		rs2168101-C	0.691767	1E-30		0.0526254	[0.044-0.062] unit increase	NR [11722792] (imputed)	N
647	chr11	8255407	8255408	rs2168101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p15.4		rs2168101-A	NR	9E-10		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
647	chr11	8255407	8255408	rs2168101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.4		rs2168101-A	NR	6E-10		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
647	chr11	8255407	8255408	rs2168101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p15.4		rs2168101-A	NR	1E-16		0.0192	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
647	chr11	8255407	8255408	rs2168101	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p15.4	LMO1	rs2168101-A	0.3199	3E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
647	chr11	8255407	8255408	rs2168101	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11p15.4	LMO1	rs2168101-C	0.691309	3E-21		0.032655	[0.026-0.039] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
647	chr11	8255407	8255408	rs2168101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs2168101-?	NR	7E-15				NR [~ 8900000] (imputed)	N
647	chr11	8255407	8255408	rs2168101	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	11p15.4	LMO1	rs2168101-C	0.76	3E-16	(European American)	1.42	[1.31-1.55]	Illumina [7968453] (imputed)	N
648	chr11	8259357	8259358	rs439667	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	11p15.4	LMO1	rs439667-?	0.276	4E-6		13.19	[7.68-18.7] unit decrease	Illumina [7663546] (imputed)	N
648	chr11	8282785	8282786	rs11041833	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	11p15.4	LMO1	rs11041833-A	0.4101	8E-6		0.4841	[0.27-0.7] unit decrease	Illumina [500508]	N
648	chr11	8298969	8298970	rs921710	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	11p15.4		rs921710-T	NR	8E-6		4.4543366	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
648	chr11	8327355	8327356	rs12793446	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.4	RIC3	rs12793446-T	0.975	2E-6	(RIC3, 7125_4_3)	0.3573235	[0.21-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
648	chr11	8334840	8334841	rs7102266	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11p15.4	NR	rs7102266-?		7E-6	(CEACAM1)	0.0856	[NR] unit decrease	Illumina [NR]	N
648	chr11	8335494	8335495	rs10769894	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	11p15.4	LMO1	rs10769894-A	0.45	9E-14		0.9	[0.88-0.93]	Affymetrix, Illumina [15838848] (imputed)	N
648	chr11	8357887	8357888	rs10769902	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11p15.4	NR	rs10769902-?	NR	4E-6		0.0364	[0.021-0.052] unit increase	Illumina [~ 7800000] (imputed)	N
649	chr11	8398846	8398847	rs1466234	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	11p15.4	NR	rs1466234-C	0.356152	2E-6		1.1350738	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
649	chr11	8404500	8404501	rs16937956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	11p15.4		rs16937956-G	0.563179	2E-9		0.0191488	[0.013-0.025] unit decrease	Illumina [13479178] (imputed)	N
649	chr11	8404500	8404501	rs16937956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p15.4		rs16937956-?	NR	3E-23				NR [~ 8900000] (imputed)	N
649	chr11	8404500	8404501	rs16937956	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p15.4	NR	rs16937956-A	NR	8E-7		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
649	chr11	8404500	8404501	rs16937956	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p15.4	LMO1, STK33	rs16937956-G	0.564	5E-11	(Japanese)	0.022	[0.016-0.028] unit decrease	Illumina [6108953] (imputed)	N
649	chr11	8484088	8484089	rs10769908	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	11p15.4	STK33	rs10769908-C	0.53	1E-6				Affymetrix, Illumina [2399588] (imputed)	N
649	chr11	8487169	8487170	rs117729306	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	11p15.4	STK33	rs117729306-C	0.01066031	7E-7		2.3079925	[1.659462156-3.209973571]	Illumina [10439017] (imputed)	N
649	chr11	8500044	8500045	rs10840060	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	11p15.4	STK33, EIF3F, TUB, RIC3, LMO1, TRIM66, RPL27A, SNORA3, SNORA45, ST5, AKIP1, C11orf16, ASCL3, TMEM9B, TMEM9B-AS1	rs10840060-C	0.5	6E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
649	chr11	8500044	8500045	rs10840060	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	11p15.4	STK33, EIF3F, TUB, RIC3, LMO1, TRIM66, RPL27A, SNORA3, SNORA45, ST5, AKIP1, C11orf16, ASCL3, TMEM9B, TMEM9B-AS1	rs10840060-C	0.5	4E-11		0.029	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
649	chr11	8500044	8500045	rs10840060	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p15.4	STK33, EIF3F, TUB, RIC3, LMO1, TRIM66, RPL27A, SNORA3, SNORA45, ST5, AKIP1, C11orf16, ASCL3, TMEM9B, TMEM9B-AS1	rs10840060-C	0.5	8E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr11	8524927	8524928	rs7932312	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	11p15.4	STK33	rs7932312-T	0.23	6E-6		0.89	[0.5-1.28] g/day increase	Affymetrix [10353649] (imputed)	N
650	chr11	8530217	8530218	rs67257872	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p15.4	STK33	rs67257872-A	0.553292	2E-14		0.0105979	[0.0079-0.0133] unit increase	Affymetrix [12370749]	N
650	chr11	8565392	8565393	rs12785939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.4	NR	rs12785939-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
650	chr11	8604592	8604593	rs4929949	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p15.4	RPL27A, TUB	rs4929949-C	0.52	3E-9		0.06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
650	chr11	8617549	8617550	rs4244804	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11p15.4	NR	rs4244804-T	0.5389	4E-8		0.011321873	[0.0073-0.0154] unit decrease	Affymetrix [10613246] (imputed)	N
650	chr11	8629089	8629090	rs57434655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.4		rs57434655-?	NR	3E-10				NR [~ 8900000] (imputed)	N
650	chr11	8636104	8636105	rs10769931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p15.4		rs10769931-C	NR	7E-19		0.0174	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
650	chr11	8637190	8637191	rs1128559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.4		rs1128559-C	NR	5E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
650	chr11	8637190	8637191	rs1128559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p15.4		rs1128559-C	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
650	chr11	8639199	8639200	rs4929923	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.4	NR	rs4929923-?	NR	9E-19				Affymetrix [~ 8270000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p15.4	NR	rs4929923-T	0.3529	4E-12		0.01797576	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
650	chr11	8639199	8639200	rs4929923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.4		rs4929923-?	NR	2E-18				NR [~ 8900000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p15.4	NA	rs4929923-T	0.3394	3E-28		0.0186	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p15.4	NA	rs4929923-T	0.3394	3E-28		0.0186	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.6341	1E-8	(EA)	0.0245	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.624	2E-8		0.0229	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.6213	1E-7	(women)	0.0272	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-?	NR	8E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-?	NR	1E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.6341	9E-11	(EA)	0.0249	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.6341	2E-9	(EA, women)	0.0301	[0.02-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.624	2E-10		0.0229	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs4929923-C	0.624	1E-9	(women)	0.0285	[0.019-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr11	8639199	8639200	rs4929923	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11p15.4	TRIM66	rs4929923-?	NR	6E-6				Illumina [12039492]	N
650	chr11	8639199	8639200	rs4929923	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	11p15.4	TRIM66	rs4929923-T	0.36	1E-8		2.3	[1.52-3.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
650	chr11	8639993	8639994	rs4929947	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p15.4	TRIM66	rs4929947-G	0.36	3E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
650	chr11	8642217	8642218	rs7950166	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11p15.4	NR	rs7950166-T	0.637	1E-10		0.00880867	[0.0061-0.0115] unit decrease	NR [~ 9732723] (imputed)	N
650	chr11	8642217	8642218	rs7950166	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11p15.4	NR	rs7950166-T	0.637	1E-10		0.009799202	[0.0068-0.0128] unit decrease	NR [~ 10000000] (imputed)	N
650	chr11	8647090	8647102	rs147425225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.4	NR	rs147425225-C	NR	8E-11		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
651	chr11	8654527	8654528	rs10769936	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.4	NR	rs10769936-C	0.7074	6E-12		0.0349	[0.025-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
651	chr11	8658484	8658485	rs4929927	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11p15.4	NR	rs4929927-A	0.3319	3E-18		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
651	chr11	8658484	8658485	rs4929927	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p15.4	TRIM66	rs4929927-A	0.3536	8E-9	(EA)	0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
651	chr11	8658484	8658485	rs4929927	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p15.4	TRIM66	rs4929927-A	0.3536	2E-6	(EA, women)	0.0219	[0.013-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
651	chr11	8662515	8662516	rs11042023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.4		rs11042023-?	NR	2E-9				NR [~ 8900000] (imputed)	N
651	chr11	8662515	8662516	rs11042023	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p15.4	TRIM66	rs11042023-C	0.6395	1E-16		0.0157	[0.012-0.019] unit increase	Illumina [246328]	N
651	chr11	8662515	8662516	rs11042023	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	11p15.4	RPL27A	rs11042023-C	0.65	1E-11	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
651	chr11	8667679	8667680	rs10840099	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p15.4	TRIM66	rs10840099-C	0.63	1E-17		0.02	[0.016-0.024] unit increase	Illumina [6108953] (imputed)	N
651	chr11	8668081	8668082	rs61741649	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11p15.4	NR	rs61741649-T	0.0625	8E-9		0.020515254	[0.014-0.027] unit increase	Affymetrix [NR] (imputed)	N
651	chr11	8669436	8669437	rs10840100	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p15.4	NR	rs10840100-A	NR	5E-12		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
651	chr11	8669436	8669437	rs10840100	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p15.4	NR	rs10840100-A	0.352929630935745	2E-15		0.022190128	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
651	chr11	8669436	8669437	rs10840100	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p15.4	TRIM66	rs10840100-A	0.3556	5E-9	(EA)	0.0203	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
651	chr11	8669436	8669437	rs10840100	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p15.4	TRIM66	rs10840100-A	0.3556	5E-7	(EA, women)	0.0229	[0.014-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
651	chr11	8673938	8673939	rs4256980	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p15.4	NA	rs4256980-C	0.3305	9E-29		0.0187	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
651	chr11	8673938	8673939	rs4256980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p15.4	TRIM66	rs4256980-C	0.3733	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
651	chr11	8673938	8673939	rs4256980	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p15.4	TRIM66	rs4256980-C	0.3733	1E-6		0.0157	[0.0094-0.022] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
651	chr11	8673938	8673939	rs4256980	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	11p15.4	TRIM66	rs4256980-G	NR	2E-6	(additive model)	0.02	[0.012-0.028] unit increase	NR [9288881] (imputed)	N
651	chr11	8673938	8673939	rs4256980	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.4	TRIM66	rs4256980-G	0.647	2E-8	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
651	chr11	8673938	8673939	rs4256980	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.4	TRIM66	rs4256980-G	0.646	3E-11	(EA)	0.021	[0.015-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
651	chr11	8673938	8673939	rs4256980	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.4	TRIM66	rs4256980-G	0.645	9E-6	(EA, men)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
651	chr11	8673938	8673939	rs4256980	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.4	TRIM66	rs4256980-G	0.638	8E-12		0.021	[0.015-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
651	chr11	8676237	8676238	rs10840102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.4		rs10840102-T	NR	2E-9		0.0407	[0.028-0.054] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
651	chr11	8677062	8677063	rs7941510	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.4	NR	rs7941510-C	0.6493	2E-17		0.0353	[0.027-0.044] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
651	chr11	8680884	8680885	rs11042026	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.4	NR	rs11042026-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
651	chr11	8688015	8688016	rs7113874	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	11p15.4	STK33, TRIM66, RPL27A	rs7113874-?	NR	9E-9		0.0147308	[0.0097-0.0197] unit decrease	Affymetrix [25921788] (imputed)	N
651	chr11	8688015	8688016	rs7113874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs7113874-C	0.6441	1E-7	(EA,women)	0.0292	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
651	chr11	8688015	8688016	rs7113874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs7113874-?	NR	2E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
651	chr11	8688015	8688016	rs7113874	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.4	TRIM66, STK33, RPL27A	rs7113874-?	NR	1E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
651	chr11	8690717	8690718	rs11042030	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p15.4		rs11042030-T	0.72	2E-9				NR [NR] (imputed)	N
651	chr11	8690717	8690718	rs11042030	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11p15.4		rs11042030-T	0.72	8E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
651	chr11	8690717	8690718	rs11042030	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p15.4		rs11042030-T	0.72	6E-17		0.014	% increase	NR [NR] (imputed)	N
651	chr11	8694072	8694073	rs12575252	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p15.4	NA	rs12575252-C	0.3337	2E-18		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
651	chr11	8694829	8694830	rs10128597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p15.4		rs10128597-A	NR	2E-16		0.0148	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
651	chr11	8694829	8694830	rs10128597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p15.4		rs10128597-?	NR	6E-8				NR [~ 8900000] (imputed)	N
651	chr11	8738842	8738843	rs871677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs871677-?	NR	2E-8				NR [~ 8900000] (imputed)	N
651	chr11	8742865	8742866	rs34723331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	ST5	rs34723331-T	0.446906	8E-11		0.016695568	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr11	8742865	8742866	rs34723331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	ST5	rs34723331-T	0.446898	8E-14		0.019233499	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr11	8742865	8742866	rs34723331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	ST5	rs34723331-T	0.446911	2E-12		0.01819814	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr11	8742865	8742866	rs34723331	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11p15.4	ST5	rs34723331-T	0.4495	3E-13		0.02673601	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
651	chr11	8751639	8751640	rs3812762	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	11p15.4	ST5	rs3812762-G	0.6748	1E-6		1.1965	[NR]	Illumina [8207076] (imputed)	N
651	chr11	8751888	8751889	rs3794153	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	ST5	rs3794153-G		1E-20		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
651	chr11	8756855	8756856	rs11042055	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11p15.4	ST5	rs11042055-A	0.43	7E-9		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
651	chr11	8756855	8756856	rs11042055	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11p15.4	ST5	rs11042055-?	NR	7E-9		1.048218	[1.03-1.06]	Illumina [13757430] (imputed)	N
651	chr11	8765116	8765117	rs10840116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11p15.4	ST5	rs10840116-T	NR	7E-9		0.0191549	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
651	chr11	8774922	8774923	rs10743086	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p15.4	ST5	rs10743086-A	0.207	2E-9		0.1832	[0.12-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
652	chr11	8782519	8782520	rs34599227	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.4	ST5	rs34599227-?		2E-6				Illumina [4322238] (imputed)	N
652	chr11	8809843	8809844	rs11603335	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11p15.4	ST5, RP11-318C2.1	rs11603335-A	0.3315	2E-6		0.026	[0.015-0.037] unit increase	Affymetrix, Illumina [NR] (imputed)	N
652	chr11	8815703	8815704	rs4579928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs4579928-?	NR	3E-10				NR [~ 8900000] (imputed)	N
652	chr11	8819002	8819003	rs10769960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11p15.4	ST5, RP11-318C2.1	rs10769960-C	0.4367	1E-15		0.02992373	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8819002	8819003	rs10769960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11p15.4	ST5, RP11-318C2.1	rs10769960-C	0.4368	7E-19		0.03312831	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8823492	8823493	rs7120300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.4		rs7120300-T	NR	8E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.4	ST5, RP11-318C2.1	rs7120300-T	0.736848	3E-13		0.01829645	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.4	ST5, RP11-318C2.1	rs7120300-T	0.73687	3E-10		0.015912987	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p15.4	ST5, RP11-318C2.1	rs7120300-C	0.263097	3E-12		0.017571341	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.660818	4E-20				Affymetrix, Illumina [24649327] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.73425	9E-18		0.017912	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.684378	2E-15				Affymetrix, Illumina [23114412] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.734907	2E-14		0.016662	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.680531	4E-14				Affymetrix, Illumina [23467995] (imputed)	N
652	chr11	8823492	8823493	rs7120300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p15.4	NR	rs7120300-T	0.734901	6E-16		0.017176	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
652	chr11	8823492	8823493	rs7120300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.4		rs7120300-?	NR	2E-13				NR [~ 8900000] (imputed)	N
652	chr11	8825765	8825766	rs11042075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	ST5, RP11-318C2.1	rs11042075-G	0.254979	3E-9		0.015485576	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr11	8826070	8826071	rs78406497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	11p15.4		rs78406497-A	0.27008	8E-13		0.0311916	[0.023-0.04] unit increase	Illumina [13474352] (imputed)	N
652	chr11	8826070	8826071	rs78406497	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.4	LOC102724784	rs78406497-?		2E-11		0.0344	[0.024-0.044] unit decrease	Illumina [31500000] (imputed)	N
652	chr11	8826070	8826071	rs78406497	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11p15.4	LOC102724784	rs78406497-?	NR	6E-12		0.03371	[0.024-0.043] unit increase novel	Illumina [6108953] (imputed)	N
652	chr11	8829493	8829494	rs10840129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.4	ST5	rs10840129-G	0.7156	2E-23		0.024771355	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8833358	8833359	rs10743091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.4		rs10743091-T	NR	1E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
652	chr11	8833358	8833359	rs10743091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.4		rs10743091-T	NR	4E-29		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
652	chr11	8833358	8833359	rs10743091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11p15.4		rs10743091-T	NR	2E-9		0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
652	chr11	8833358	8833359	rs10743091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11p15.4		rs10743091-T	0.46839639	1E-8		0.07607059	[0.05-0.102] unit increase	Illumina [13427135] (imputed)	N
652	chr11	8842589	8842590	rs7947553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.4		rs7947553-?	NR	3E-14				NR [~ 8900000] (imputed)	N
652	chr11	8844653	8844653	rs35762459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11p15.4	ST5	rs35762459-TA	0.4697	7E-13		0.02563905	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8844908	8844909	rs7947631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p15.4		rs7947631-A	NR	5E-34		0.0239	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
652	chr11	8844908	8844909	rs7947631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.4	ST5	rs7947631-A	0.493294	7E-30		0.025498603	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8844908	8844909	rs7947631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.4	ST5	rs7947631-A	0.49321	4E-41		0.030042667	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8844908	8844909	rs7947631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.4	ST5	rs7947631-A	0.493214	4E-32		0.02639231	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8844908	8844909	rs7947631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs7947631-A	0.533169	5E-51				Affymetrix, Illumina [24588908] (imputed)	N
652	chr11	8844908	8844909	rs7947631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.4	NR	rs7947631-A	0.490276	1E-49		0.027075	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
652	chr11	8846101	8846102	rs11042093	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11p15.4		rs11042093-G	0.506	2E-22				Affymetrix [10369434] (imputed)	N
652	chr11	8846101	8846102	rs11042093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	ST5	rs11042093-T	0.492586	9E-34		0.027269712	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr11	8846102	8846103	rs12222526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	ST5	rs12222526-G	0.492626	5E-13		0.016230403	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8846102	8846103	rs12222526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs12222526-G	0.48626	2E-13				Affymetrix, Illumina [17210439] (imputed)	N
652	chr11	8846102	8846103	rs12222526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.4	NR	rs12222526-G	0.492544	1E-16		0.01636	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
652	chr11	8846368	8846369	rs10840133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11p15.4	ST5	rs10840133-A	0.4933	4E-12		0.0249874	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8847040	8847041	rs10769966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p15.4	ST5	rs10769966-A	0.492725	2E-31		0.026250096	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8847040	8847041	rs10769966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11p15.4	ST5	rs10769966-A	0.4939	2E-15		0.02851905	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8847040	8847041	rs10769966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11p15.4	ST5	rs10769966-A	0.4939	3E-12		0.0251476	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8858376	8858377	rs2653606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.4		rs2653606-C	0.41	1E-12		7.08	z score increase	Affymetrix [9061022] (imputed)	N
652	chr11	8862529	8862530	rs7945705	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	AKIP1, ST5	rs7945705-A		2E-22		0.021	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
652	chr11	8862529	8862530	rs7945705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11p15.4	ST5	rs7945705-A	0.4505	3E-17		0.03034774	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8862843	8862844	rs11042097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p15.4		rs11042097-G	NR	8E-27		0.0196	[0.016-0.023] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
652	chr11	8866146	8866146	rs76506961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	ST5	rs76506961-AAAT	0.24329	1E-9		0.017755207	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8866146	8866146	rs76506961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	ST5	rs76506961-AAAT	0.2433	5E-11		0.019159107	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8866146	8866146	rs76506961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	ST5	rs76506961-AAAT	0.243269	4E-10		0.01822921	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8866807	8866808	rs7123429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.4	ST5	rs7123429-G	0.554243	3E-25		0.023613393	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
652	chr11	8867508	8867509	rs7937298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.4		rs7937298-?	NR	6E-12				NR [~ 8900000] (imputed)	N
652	chr11	8869128	8869129	rs10743093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.4		rs10743093-G	NR	7E-27		0.0174	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
652	chr11	8876597	8876598	rs56316046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs56316046-T	0.43379	3E-40				Affymetrix, Illumina [24332387] (imputed)	N
652	chr11	8876597	8876598	rs56316046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs56316046-T	0.433784	7E-50				Affymetrix, Illumina [24653286] (imputed)	N
652	chr11	8876597	8876598	rs56316046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs56316046-T	0.434815	8E-48				Affymetrix, Illumina [24558453] (imputed)	N
652	chr11	8876851	8876852	rs2742552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p15.4	NR	rs2742552-T	0.506599	8E-48		0.026828	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
652	chr11	8876851	8876852	rs2742552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p15.4	NR	rs2742552-T	0.506674	3E-44		0.025737	[0.022-0.029] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
652	chr11	8876851	8876852	rs2742552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.4		rs2742552-?	NR	8E-29				NR [~ 8900000] (imputed)	N
652	chr11	8894509	8894510	rs11042105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p15.4		rs11042105-C	NR	6E-29		0.0281	[0.023-0.033] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
652	chr11	8896082	8896083	rs11042106	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11p15.4	ST5	rs11042106-T	0.844307	3E-29		0.00349629	[0.0029-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
652	chr11	8899399	8899400	rs2455601	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	11p15.4	NR	rs2455601-A	NR	7E-6		1.34	[NR]	Illumina [up to 9792010] (imputed)	N
652	chr11	8899527	8899528	rs2742540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.4	NR	rs2742540-G	0.493378	9E-37		0.023447	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
652	chr11	8899527	8899528	rs2742540	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11p15.4	ST5	rs2742540-G	0.4983	6E-16		0.02855226	[0.022-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr11	8900393	8900394	rs2653559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	11p15.4		rs2653559-T	0.435314	2E-9		0.0189756	[0.013-0.025] unit increase	Illumina [13478961] (imputed)	N
652	chr11	8900393	8900394	rs2653559	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.4	ST5	rs2653559-C	0.835963	5E-31		0.0287299	[0.024-0.034] unit increase	NR [13737936] (imputed)	N
652	chr11	8900393	8900394	rs2653559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.4		rs2653559-?	NR	1E-32				NR [~ 8900000] (imputed)	N
652	chr11	8900393	8900394	rs2653559	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.4		rs2653559-?	NR	2E-34		0.0329226	[0.027-0.038] unit increase	Affymetrix [20259828] (imputed)	N
652	chr11	8903942	8903943	rs34105455	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	11p15.4	ST5	rs34105455-G	0.13	4E-6		0.25	[0.15-0.35] unit decrease	Illumina [5918868] (imputed)	N
653	chr11	8917975	8917976	rs72632952	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11p15.4	ST5	rs72632952-C	0.15	3E-23		9.93	z-score increase	Affymetrix [4311822] (imputed)	N
653	chr11	8923872	8923873	rs71059192	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.4		rs71059192-?	NR	2E-31		0.0325206	[0.027-0.038] unit increase	Affymetrix [20259828] (imputed)	N
653	chr11	8923872	8923873	rs71059192	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.4	ST5	rs71059192-CA	0.231007	8E-6	(men)	0.0234763	[0.011-0.036] unit decrease	NR [17166351] (imputed)	N
653	chr11	8923872	8923873	rs71059192	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.4	ST5	rs71059192-CA	0.230782	2E-15		0.030958	[0.023-0.039] unit decrease	NR [17166351] (imputed)	N
653	chr11	8923872	8923873	rs71059192	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.4	ST5	rs71059192-CA	0.230585	2E-12	(women)	0.0375565	[0.026-0.049] unit decrease	NR [17166351] (imputed)	N
653	chr11	8933063	8933064	rs1133833	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11p15.4		rs1133833-A	0.2462	3E-9		0.089679696	[0.059-0.12] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
653	chr11	8941214	8941215	rs4910157	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.4		rs4910157-G	0.46	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
653	chr11	8941214	8941215	rs4910157	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11p15.4	NR	rs4910157-?	NR	8E-8		0.0438	[0.028-0.06] unit increase	Illumina [at least 560000] (imputed)	N
653	chr11	8959510	8959511	rs4910179	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p15.4	ST5, AKIP1, C11orf16, ASCL3, TMEM9B, NRIP3, SCUBE2	rs4910179-?		5E-9				NR [7428630] (imputed)	N
653	chr11	9024629	9024630	rs6486060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.4	NRIP3	rs6486060-G	NR	5E-8		0.0172574	[0.011-0.023] unit increase	Affymetrix [127266] (imputed)	N
653	chr11	9024629	9024630	rs6486060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11p15.4	NRIP3	rs6486060-G	NR	2E-8		0.0181835	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
653	chr11	9024629	9024630	rs6486060	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11p15.4	NR	rs6486060-G	0.45	2E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix [2446094] (imputed)	N
653	chr11	9024629	9024630	rs6486060	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11p15.4	NR	rs6486060-G	0.45	5E-8				Affymetrix [2446094] (imputed)	N
653	chr11	9024629	9024630	rs6486060	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	11p15.4	NR	rs6486060-A	0.5563	6E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
653	chr11	9035632	9035633	rs1984790	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11p15.4	RP11-467K18.2	rs1984790-T	0.2796	4E-6		0.0268	[0.015-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
653	chr11	9035928	9035929	rs1984775	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11p15.4	ABCG2	rs1984775-?		1E-9				NR [7428630] (imputed)	N
654	chr11	9044336	9044337	rs4910442	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11p15.4	NR	rs4910442-?	NR	9E-6		0.0368	[0.021-0.053] unit decrease	Illumina [at least 560000] (imputed)	N
654	chr11	9044766	9044767	rs932287	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11p15.4	Intergenic	rs932287-?	NR	3E-7		1.413	[NR]	Affymetrix [492217] (imputed)	N
654	chr11	9059549	9059550	rs10743098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.4		rs10743098-?	NR	3E-9				NR [~ 8900000] (imputed)	N
654	chr11	9071174	9071175	rs10769988	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	11p15.4	SCUBE2	rs10769988-?	NR	7E-6				Illumina [1464300]	N
654	chr11	9089553	9089554	rs56277831	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	11p15.4		rs56277831-?	NR	6E-6		0.2636634	[0.15-0.38] unit increase	Illumina [9906551] (imputed)	N
654	chr11	9093485	9093486	rs7929797	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11p15.4		rs7929797-?	NR	1E-8				Affymetrix [NR] (imputed)	N
654	chr11	9094565	9094566	rs7395330	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11p15.4		rs7395330-?	NR	1E-8				Affymetrix [NR] (imputed)	N
654	chr11	9096492	9096493	rs4061964	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11p15.4		rs4061964-?	NR	2E-8				Affymetrix [NR] (imputed)	N
654	chr11	9099846	9099847	rs118102650	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	11p15.4	NR	rs118102650-A	0.01	2E-6		1.79	1.41-2.28	NR [at least 8807005] (imputed)	N
654	chr11	9101317	9101318	rs10732200	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11p15.4		rs10732200-?	NR	1E-8				Affymetrix [NR] (imputed)	N
654	chr11	9109286	9109287	rs2647528	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	11p15.4	SCUBE2	rs2647528-C	0.17	3E-7		0.59	unit increase	Illumina [283437]	N
654	chr11	9111557	9111558	rs963167	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	11p15.4	SCUBE2	rs963167-C	0.15	1E-7		0.65	unit increase	Illumina [283437]	N
655	chr11	9262491	9262492	rs9888193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.4		rs9888193-?	NR	2E-11				NR [~ 8900000] (imputed)	N
655	chr11	9279219	9279220	rs111941022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11p15.4		rs111941022-?	NR	9E-8				NR [~ 8900000] (imputed)	N
655	chr11	9280283	9280284	rs7941600	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.4	DENND5A	rs7941600-A	0.0836	6E-6		0.0517	[0.029-0.074] unit increase	NR [8041861] (imputed)	N
656	chr11	9356180	9356181	rs143210750	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11p15.4	TMEM41B	rs143210750-T	0.01623	6E-6	(African)			Illumina [4404269] (imputed)	N
656	chr11	9389874	9389875	rs4910048	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.4	intergenic	rs4910048-T	0.5049	1E-15		0.0151	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
656	chr11	9432089	9432090	rs12279202	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	11p15.4	IPO7	rs12279202-T	0.09	4E-8		0.06	[NR] unit decrease	Affymetrix [5396780] (imputed)	N
657	chr11	9447612	9447613	rs114846224	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	11p15.4		rs114846224-A	0.9837	1E-8		0.2584	[0.17-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
657	chr11	9469791	9469792	rs1020622	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	11p15.4		rs1020622-C	0.55	6E-14		0.1	unit decrease	Illumina [2093892] (imputed)	N
657	chr11	9469791	9469792	rs1020622	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	11p15.4		rs1020622-C	0.55	8E-9		0.08	unit decrease	Illumina [2398641] (imputed)	N
657	chr11	9522136	9522137	rs1470895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs1470895-?	NR	1E-9				NR [~ 8900000] (imputed)	N
657	chr11	9524254	9524255	rs11042397	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11p15.4	ZNF143	rs11042397-A	0.5447	4E-6		0.0372	[0.021-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
657	chr11	9537043	9537044	rs10770035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11p15.4		rs10770035-C	0.701814	2E-13		0.0235124	[0.017-0.03] unit increase	Illumina [13479924] (imputed)	N
657	chr11	9537415	9537416	rs10770036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p15.4		rs10770036-C	0.700456	1E-16		0.019561	[0.015-0.024] unit increase	Illumina [13479295] (imputed)	N
657	chr11	9537415	9537416	rs10770036	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.4	ZNF143	rs10770036-?	NR	5E-22		0.03227882	[0.026-0.039] unit increase	Illumina [27896057] (imputed)	N
657	chr11	9537903	9537904	rs10743108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.4		rs10743108-C	NR	9E-21		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
658	chr11	9590388	9590389	rs7939541	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	11p15.4	ZNF143, WEE1	rs7939541-C	0.41	9E-12		0.08	[0.06-0.1] unit increase	NR [13607369] (imputed)	N
658	chr11	9593573	9593574	rs7940672	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	11p15.4	WEE1	rs7940672-A	NR	3E-6		0.116	[0.067-0.165] unit decrease	Illumina [NR] (imputed)	N
658	chr11	9602281	9602282	rs4910482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p15.4	WEE1	rs4910482-T	0.426025	1E-9		0.0138474945	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
658	chr11	9629552	9629553	rs10840270	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	11p15.4	intergenic	rs10840270-?	NR	2E-6		1.25	[NR]	Affymetrix [up to 10996499] (imputed)	N
658	chr11	9661602	9661603	rs11042454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs11042454-A	NR	6E-19		0.0254	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
659	chr11	9726368	9726369	rs34043654	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.4	NR	rs34043654-C	0.352274	8E-12		0.013423	[0.0096-0.0173] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
659	chr11	9728966	9728966	rs35272197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.4	SWAP70	rs35272197-CT	0.35279	6E-9		0.013537657	[0.009-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9730140	9730141	rs10840291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.4		rs10840291-?	NR	4E-9				NR [~ 8900000] (imputed)	N
659	chr11	9734172	9734173	rs61878123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs61878123-A	NR	6E-24		0.028	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
659	chr11	9741048	9741049	rs61876865	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11p15.4	NR	rs61876865-?	NR	1E-6		0.0487	[0.029-0.068] unit increase	Illumina [at least 560000] (imputed)	N
659	chr11	9751195	9751196	rs10840293	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.4	SWAP70	rs10840293-A	0.5523	9E-13		0.046	[0.033-0.059] unit increase	NR [8041861] (imputed)	N
659	chr11	9751195	9751196	rs10840293	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	11p15.4	SWAP70	rs10840293-A	0.552	7E-9		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
659	chr11	9751195	9751196	rs10840293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	11p15.4	SWAP70	rs10840293-A	0.5563	9E-11		0.0236099	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
659	chr11	9751195	9751196	rs10840293	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	11p15.4	SWAP70	rs10840293-A	0.55	1E-8	(additive model)	1.06	[1.04-1.08]	Affymetrix, Illumina [8600000] (imputed)	N
659	chr11	9751874	9751876	rs58068637	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.4	SWAP70	rs58068637-TAA	0.599	2E-14		0.2638	[0.2-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
659	chr11	9752412	9752413	rs11607169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.4	SWAP70	rs11607169-G	0.209693	2E-14		0.0214943	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9752412	9752413	rs11607169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.4	NR	rs11607169-G	0.207265	1E-18		0.020055	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
659	chr11	9752740	9752741	rs9943599	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11p15.4		rs9943599-T	NR	3E-10		1.09	[1.06-1.11]	NR [13810676] (imputed)	N
659	chr11	9752740	9752741	rs9943599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs9943599-C	0.426872	5E-21				Affymetrix, Illumina [22063850] (imputed)	N
659	chr11	9753600	9753601	rs360158	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs360158-A	0.66	4E-6	(Japanese)	0.3744	[0.21-0.53] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9753600	9753601	rs360158	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs360158-A	0.6641	7E-6	(Japanese)	0.2594	[0.15-0.37] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9753600	9753601	rs360158	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	SWAP70	rs360158-G		6E-7		0.278	unit decrease	Affymetrix [at least 2696785] (imputed)	N
659	chr11	9753600	9753601	rs360158	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	SWAP70	rs360158-G		1E-14		0.301	unit decrease	Affymetrix [at least 2696785] (imputed)	N
659	chr11	9753600	9753601	rs360158	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	SWAP70	rs360158-G		7E-7		0.13	unit decrease	Affymetrix [at least 2696785] (imputed)	N
659	chr11	9753600	9753601	rs360158	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	SWAP70	rs360158-G		5E-12		0.165	unit decrease	Affymetrix [at least 2696785] (imputed)	N
659	chr11	9759201	9759202	rs360155	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.4	SWAP70	rs360155-T	0.59015625	9E-33	(SWAP70, 13552_7_3)	0.297444	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
659	chr11	9762273	9762274	rs360153	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SWAP70	5,365 Icelandic ancestry individuals	NA	11p15.4		rs360153-T	0.4099	1E-53		0.288941	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
659	chr11	9762273	9762274	rs360153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.4		rs360153-C	NR	4E-21		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
659	chr11	9762273	9762274	rs360153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p15.4		rs360153-C	NR	2E-20		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
659	chr11	9762273	9762274	rs360153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p15.4		rs360153-C	NR	1E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
659	chr11	9762273	9762274	rs360153	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	11p15.4	SWAP70	rs360153-?	NR	1E-10		1.0	NR unit decrease	NR [14100000] (imputed)	N
659	chr11	9762273	9762274	rs360153	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	11p15.4	SWAP70	rs360153-?	NR	5E-8				NR [14100000] (imputed)	N
659	chr11	9762273	9762274	rs360153	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11p15.4	SWAP70	rs360153-C	0.55	3E-8		1.04	[1.02-1.07]	Illumina [5167567] (imputed)	N
659	chr11	9762273	9762274	rs360153	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p15.4	SWAP70	rs360153-T	0.4152	3E-36		0.1917	[0.16-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
659	chr11	9763093	9763094	rs373894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs373894-?	NR	2E-10				NR [~ 8900000] (imputed)	N
659	chr11	9763968	9763969	rs2649044	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.37	2E-8	(Japanese)	0.4767	[0.31-0.64] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9763968	9763969	rs2649044	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.3653	4E-9	(Japanese)	0.3523	[0.24-0.47] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9763968	9763969	rs2649044	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.3653	4E-8	(Japanese)	0.0815	[0.052-0.111] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9763968	9763969	rs2649044	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.3653	6E-8	(Japanese)	0.2919	[0.19-0.4] unit increase	Illumina [6200000] (imputed)	N
659	chr11	9763968	9763969	rs2649044	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.547	2E-7	(EA, initial)	0.242	[0.15-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
659	chr11	9763968	9763969	rs2649044	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.4	SWAP70	rs2649044-T	0.547	1E-14		0.2	[0.15-0.25] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
659	chr11	9765502	9765503	rs4910498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11p15.4		rs4910498-T	NR	1E-10		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
659	chr11	9765502	9765503	rs4910498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.4		rs4910498-T	NR	1E-45		0.0297	[0.026-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
659	chr11	9765502	9765503	rs4910498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p15.4	SWAP70	rs4910498-T	0.643992	9E-10		0.014439739	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9765502	9765503	rs4910498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.4	NR	rs4910498-T	0.645585	2E-22		0.019669	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
659	chr11	9765502	9765503	rs4910498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs4910498-T	0.592586	5E-20				Affymetrix, Illumina [24246363] (imputed)	N
659	chr11	9765502	9765503	rs4910498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	NR	rs4910498-A	0.6416	6E-13	(East Asian)	0.4913	[0.36-0.62] unit decrease	Illumina [6200000] (imputed)	N
659	chr11	9765502	9765503	rs4910498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs4910498-A	0.6416	3E-14	(East Asian)	0.3639	[0.27-0.46] unit decrease	Illumina [6200000] (imputed)	N
659	chr11	9765502	9765503	rs4910498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11p15.4	SWAP70	rs4910498-A	0.6409	9E-9	(East Asian)	0.0687	[0.045-0.092] unit decrease	Illumina [6200000] (imputed)	N
659	chr11	9765502	9765503	rs4910498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.4	SWAP70	rs4910498-A	0.6414	3E-12	(East Asian)	0.2982	[0.21-0.38] unit decrease	Illumina [6200000] (imputed)	N
659	chr11	9765502	9765503	rs4910498	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	11p15.4	SWAP70	rs4910498-?	NR	2E-8		0.02332	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
659	chr11	9766931	9766932	rs378825	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p15.4	SWAP70	rs378825-?	NR	1E-13		0.0364491	[0.027-0.046] unit increase	Illumina [4804024] (imputed)	N
659	chr11	9766931	9766932	rs378825	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	11p15.4	SWAP70	rs378825-G	0.427	3E-8				Affymetrix [28000000] (imputed)	N
659	chr11	9769561	9769562	rs415895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11p15.4		rs415895-G	NR	1E-12		0.0421	[0.031-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
659	chr11	9769561	9769562	rs415895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11p15.4		rs415895-G	NR	2E-9		0.0413	[0.028-0.055] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
659	chr11	9769561	9769562	rs415895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p15.4		rs415895-G	NR	6E-18		0.0438	[0.034-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
659	chr11	9769561	9769562	rs415895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.4		rs415895-G	NR	6E-16		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646139	5E-32		0.027666075	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646154	1E-26		0.025058532	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646089	3E-20		0.021318484	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.645867	2E-37		0.030185444	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646156	9E-66		0.039948404	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646252	8E-17		0.019571254	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-C	0.646093	9E-41		0.0310471	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646126	4E-14		0.017641382	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.4	SWAP70	rs415895-G	0.646143	7E-12		0.016040828	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs415895-G	0.591041	5E-12				Affymetrix, Illumina [24588908] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs415895-G	0.591201	4E-38				Affymetrix, Illumina [21126107] (imputed)	N
659	chr11	9769561	9769562	rs415895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11p15.4	NR	rs415895-G	0.647661	3E-40		0.027819	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
659	chr11	9769561	9769562	rs415895	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p15.4	SWAP70	rs415895-C	0.353354	1E-16		0.052075963	[0.04-0.064] unit decrease	Affymetrix [7288503] (imputed)	N
659	chr11	9769561	9769562	rs415895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.4		rs415895-?	NR	2E-18				NR [~ 8900000] (imputed)	N
659	chr11	9769561	9769562	rs415895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p15.4		rs415895-?	NR	6E-19				NR [~ 8900000] (imputed)	N
659	chr11	9769561	9769562	rs415895	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.4	SWAP70	rs415895-G	0.65	4E-25	(Switch-associated protein 70, SWAP70.13552.7.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
659	chr11	9769561	9769562	rs415895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11p15.4	SWAP70	rs415895-G	0.6464	9E-14		0.0280011	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
659	chr11	9769561	9769562	rs415895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11p15.4	SWAP70	rs415895-G	0.6465	1E-12		0.02666231	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
659	chr11	9769561	9769562	rs415895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	11p15.4	SWAP70	rs415895-G	0.6465	5E-11		0.02381166	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
659	chr11	9769561	9769562	rs415895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11p15.4	SWAP70	rs415895-G	0.6464	4E-9		0.02200319	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
659	chr11	9770317	9770318	rs472109	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11p15.4	SWAP70	rs472109-?	NR	5E-9		0.02551	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
659	chr11	9770317	9770318	rs472109	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11p15.4	LOC440028, SBF2-AS1, SWAP70	rs472109-C	0.5698	6E-12		0.0391	[0.028-0.05] unit increase	Affymetrix [at least 7947838] (imputed)	N
659	chr11	9770909	9770910	rs10770059	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11p15.4		rs10770059-T	0.351	5E-11		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
659	chr11	9771686	9771687	rs6483656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p15.4		rs6483656-C	NR	3E-12		0.0463	[0.033-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
659	chr11	9771686	9771687	rs6483656	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p15.4	SWAP70	rs6483656-G	0.35589	8E-12		0.05615201	[0.04-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
659	chr11	9773516	9773517	rs360136	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11p15.4	SWAP70	rs360136-A	0.565367	2E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
659	chr11	9773516	9773517	rs360136	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	11p15.4	SWAP70	rs360136-?		5E-10		1.17	[1.11-1.23]	Illumina [NR] (imputed)	N
659	chr11	9775090	9775091	rs360139	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	11p15.4	SWAP70	rs360139-G	0.56	2E-7		1.05	[1.03-1.07]	NR [~ 8000000] (imputed)	N
659	chr11	9776566	9776567	rs360140	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p15.4	LOC440028	rs360140-A	0.662	1E-12		0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
659	chr11	9777704	9777705	rs397848406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	11p15.4		rs397848406-T	0.66507	4E-10		0.0220991	[0.015-0.029] unit increase	Illumina [13477770] (imputed)	N
659	chr11	9777704	9777705	rs397848406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	11p15.4		rs397848406-T	0.665067	3E-9		0.0215899	[0.014-0.029] unit increase	Illumina [13477767] (imputed)	N
659	chr11	9779276	9779277	rs4910499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11p15.4		rs4910499-A	NR	6E-14		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
659	chr11	9780890	9780891	rs10734649	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11p15.4	LOC440028, SBF2-AS1, SWAP70	rs10734649-T	0.477	3E-11		0.044	[0.03-0.058] unit increase	Affymetrix [7947838] (imputed)	N
659	chr11	9786016	9786017	rs360142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.4	NR	rs360142-A	0.898325	1E-10		0.019587	[0.014-0.026] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
659	chr11	9802227	9802228	rs360124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p15.4	SBF2-AS1	rs360124-C	0.9041215	5E-10		0.023426378	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9802227	9802228	rs360124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p15.4	SBF2-AS1	rs360124-C	0.9041036	1E-10		0.024208639	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
659	chr11	9802227	9802228	rs360124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p15.4	NR	rs360124-C	0.904	1E-11		0.022808	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
659	chr11	9802227	9802228	rs360124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.4		rs360124-?	NR	3E-8				NR [~ 8900000] (imputed)	N
659	chr11	9802441	9802442	rs2173030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs2173030-C	0.851208	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
659	chr11	9803393	9803394	rs117688622	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11p15.4	SBF2-AS1, SBF2	rs117688622-T	0.9643	6E-7		0.0971	[0.059-0.135] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
659	chr11	9809955	9809956	rs360129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11p15.4		rs360129-G	NR	3E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
659	chr11	9818004	9818005	rs418635	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs418635-?	NR	5E-13				Affymetrix [NR]	N
660	chr11	9842490	9842491	rs10734650	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	11p15.4	SBF2	rs10734650-A	0.36	8E-9		1.28	[NR]	Illumina [747089]	N
660	chr11	9852474	9852475	rs2403221	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.4	NR	rs2403221-G	0.3428	6E-11		0.0317	[0.022-0.041] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
660	chr11	9852474	9852475	rs2403221	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	11p15.4	NR	rs2403221-?		5E-6	(females)			Illumina [1211988] (imputed)	N
660	chr11	9856014	9856015	rs76789970	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.4	NR	rs76789970-C	0.8868	9E-11		0.0387	[0.027-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
660	chr11	9857748	9857749	rs2220970	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	11p15.4	SBF2	rs2220970-A	0.342	1E-8	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [5864938] (imputed)	N
660	chr11	9857748	9857749	rs2220970	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11p15.4	SBF2	rs2220970-?	NR	2E-8		0.02475	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
660	chr11	9872696	9872697	rs11042512	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	11p15.4	NR	rs11042512-A	0.653772	4E-8		0.0570427	[0.037-0.078] unit decrease	Affymetrix [21375087] (imputed)	N
660	chr11	9890051	9890052	rs12361687	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p15.4	SBF2	rs12361687-A	0.3608	7E-11		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
660	chr11	9900112	9900113	rs17269812	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs17269812-?	NR	6E-6				Affymetrix [NR]	N
660	chr11	9902110	9902111	rs11042524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs11042524-A	0.492945	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
660	chr11	9909126	9909127	rs75248620	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p15.4	SBF2	rs75248620-A	0.0794	5E-8		0.0038	[0.0026-0.005] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
660	chr11	9928510	9928511	rs117698693	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.4	NR	rs117698693-G	0.0224	4E-6	(EA)	0.117	[0.067-0.167] unit increase	Illumina [~ 11800000] (imputed)	N
660	chr11	9929541	9929542	rs12362504	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p15.4	SBF2	rs12362504-C	NR	2E-7		1.4	[1.23-1.58]	NR [7738399] (imputed)	N
660	chr11	9951256	9951257	rs1512829	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	11p15.4	SBF2	rs1512829-G	0.238357781	2E-6		1.0958536	[1.055577724-1.137666226]	Illumina [10439017] (imputed)	N
660	chr11	9951671	9951672	rs10840326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p15.4	SBF2	rs10840326-C	NR	7E-11		0.0205336	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
660	chr11	9951671	9951672	rs10840326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.4	SBF2	rs10840326-C	NR	3E-11		0.0208676	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
660	chr11	9951671	9951672	rs10840326	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	11p15.4	NR	rs10840326-C	0.451	9E-8		0.0106	[0.0067-0.0145] unit increase	NR [~ 27400000] (imputed)	N
660	chr11	9958477	9958478	rs11042557	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	11p15.4	SBF2	rs11042557-T	0.609797	5E-13		1.0327538	NR	Affymetrix [~ 9600000] (imputed)	N
660	chr11	9959636	9959637	rs12274440	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11p15.4	SBF2	rs12274440-A	0.112471	3E-8		0.071488105	[0.046-0.097] unit increase	Affymetrix [7288503] (imputed)	N
660	chr11	9960871	9960872	rs61876950	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11p15.4	NR	rs61876950-T	0.4	7E-7		0.01731031	[0.01-0.024] unit increase	Affymetrix [up to 6544775] (imputed)	N
661	chr11	9962977	9962978	rs72855633	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	SBF2	rs72855633-G		1E-28		0.04	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
661	chr11	9963056	9963057	rs11042561	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs11042561-?	NR	2E-9				Affymetrix [NR]	N
661	chr11	9973061	9973062	rs10500715	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	11p15.4	SBF2	rs10500715-T	0.63	2E-7		1.32	[1.19-1.47]	Illumina [2731086] (imputed)	N
661	chr11	9978117	9978117	rs34154767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11p15.4		rs34154767-TC	NR	6E-12		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
661	chr11	10002218	10002219	rs117518788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs117518788-?	NR	5E-15				NR [~ 8900000] (imputed)	N
661	chr11	10014462	10014463	rs78399419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.4		rs78399419-?	NR	3E-8				NR [~ 8900000] (imputed)	N
661	chr11	10015792	10015793	rs11042583	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.4	SBF2	rs11042583-A	NR	6E-10		0.0174819	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
661	chr11	10015792	10015793	rs11042583	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.4	SBF2	rs11042583-A	NR	2E-9		0.0169236	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
661	chr11	10015792	10015793	rs11042583	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.4	SBF2	rs11042583-A	NR	3E-9		0.0167781	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	NR	rs66803065-C		1E-10	(EA)	0.474	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	NR	rs66803065-C		1E-10		0.448	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	NR	rs66803065-C		4E-19		0.429	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	NR	rs66803065-C		2E-8	(EA)	0.277	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	NR	rs66803065-C		1E-6		0.224	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	NR	rs66803065-C		5E-11		0.209	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	NR	rs66803065-C		1E-6		0.221	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10025851	10025852	rs66803065	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	NR	rs66803065-C		4E-14		0.221	unit decrease	Affymetrix [at least 2696785] (imputed)	N
661	chr11	10032984	10032985	rs59479500	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	11p15.4	NR	rs59479500-G	NR	6E-6	(random effect)	1.0752687	NR	NR [6904914] (imputed)	N
661	chr11	10046021	10046022	rs17272637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs17272637-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
661	chr11	10067261	10067262	rs7122422	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.4	SBF2	rs7122422-C	NR	2E-9		0.0189206	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
661	chr11	10067261	10067262	rs7122422	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11p15.4	NR	rs7122422-C	0.48	3E-16		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
661	chr11	10067261	10067262	rs7122422	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11p15.4	NR	rs7122422-C	0.48	5E-8				Affymetrix [2446094] (imputed)	N
661	chr11	10068425	10068426	rs374879822	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p15.4		rs374879822-C	0.563866	6E-9		0.023537	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
661	chr11	10076429	10076430	rs10840349	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p15.4	NA	rs10840349-A	0.507	5E-10		0.0122	[0.0083-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
661	chr11	10078103	10078104	rs11042602	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11p15.4	NR	rs11042602-A	0.48209	3E-16		0.0550607	[0.042-0.068] unit decrease	Affymetrix [17914406] (imputed)	N
662	chr11	10130362	10130363	rs10743129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.4	NR	rs10743129-A	0.298594	7E-12		0.014467	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
662	chr11	10155307	10155308	rs112234931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.4	SBF2	rs112234931-G	NR	1E-9		0.0178621	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
662	chr11	10159882	10159883	rs4323860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.4		rs4323860-?	NR	2E-16				NR [~ 8900000] (imputed)	N
662	chr11	10173922	10173922	rs549278687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.4	SBF2, RP11-748C4.1	rs549278687-A	NR	4E-10		0.0194076	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
662	chr11	10178436	10178437	rs59901009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs59901009-C	0.258508	2E-79				Affymetrix, Illumina [24653286] (imputed)	N
662	chr11	10178436	10178437	rs59901009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p15.4	NR	rs59901009-C	0.245387	6E-82		0.041074	[0.037-0.045] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
662	chr11	10178436	10178437	rs59901009	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	SBF2	rs59901009-C		1E-54		0.04	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
662	chr11	10178436	10178437	rs59901009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11p15.4	RP11-748C4.1, SBF2	rs59901009-C	0.2443	3E-32		0.04877903	[0.041-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
662	chr11	10178436	10178437	rs59901009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11p15.4	RP11-748C4.1, SBF2	rs59901009-C	0.2443	9E-39		0.05349136	[0.045-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
662	chr11	10180990	10180991	rs55893317	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11p15.4	RP11-748C4.1, SBF2	rs55893317-G	0.2444	3E-27		0.04481782	[0.037-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
662	chr11	10192991	10192992	rs56287081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p15.4		rs56287081-A	NR	7E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
662	chr11	10195281	10195282	rs368417629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.4		rs368417629-T	NR	7E-56		0.0333	[0.029-0.037] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
662	chr11	10195281	10195282	rs368417629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.4		rs368417629-T	NR	3E-49		0.0293	[0.025-0.033] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
662	chr11	10195281	10195282	rs368417629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p15.4		rs368417629-T	NR	4E-58		0.0328	[0.029-0.037] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
662	chr11	10195281	10195282	rs368417629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	SBF2	rs368417629-T	0.235106	2E-33		0.035851028	[0.03-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
662	chr11	10195281	10195282	rs368417629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	SBF2	rs368417629-T	0.235125	6E-43		0.040874816	[0.035-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
662	chr11	10195670	10195671	rs200888398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	SBF2	rs200888398-G	0.243352	5E-34		0.035122264	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
662	chr11	10200912	10200913	rs185712874	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.4	SBF2	rs185712874-A	0.0681	5E-10		0.0257	[0.018-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
662	chr11	10203609	10203610	rs10500721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs10500721-G	0.260774	4E-80				Affymetrix, Illumina [24332387] (imputed)	N
662	chr11	10203609	10203610	rs10500721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.4	NR	rs10500721-G	0.245906	1E-78		0.040248	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
662	chr11	10203609	10203610	rs10500721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs10500721-G	0.260083	2E-99				Affymetrix, Illumina [24558453] (imputed)	N
662	chr11	10203609	10203610	rs10500721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p15.4	NR	rs10500721-G	0.245952	1E-101		0.04582	[0.042-0.05] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
662	chr11	10215173	10215174	rs11042662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.4		rs11042662-?	NR	6E-71				NR [~ 8900000] (imputed)	N
663	chr11	10236477	10236478	rs7937758	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p15.4	NR	rs7937758-A	0.5	8E-12		0.0124	[0.0088-0.016] unit decrease	NR [NR]	N
663	chr11	10236477	10236478	rs7937758	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11p15.4	NR	rs7937758-A	0.503914	3E-8		0.00663707	[0.0041-0.0092] unit increase	Affymetrix [16578495] (imputed)	N
663	chr11	10244104	10244105	rs1372809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	11p15.4		rs1372809-G	NR	9E-9		0.0613	[0.04-0.082] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
663	chr11	10247294	10247295	rs716804	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs716804-?	NR	2E-10				NR [NR]	N
663	chr11	10247294	10247295	rs716804	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs716804-?	NR	6E-10				NR [NR]	N
663	chr11	10247294	10247295	rs716804	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p15.4	NR	rs716804-C	0.5079	3E-8		0.019	[0.012-0.026] unit decrease	Illumina [NR] (imputed)	N
663	chr11	10247895	10247896	rs2218305	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs2218305-?	NR	1E-10				NR [NR]	N
663	chr11	10247895	10247896	rs2218305	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs2218305-?	NR	3E-11				NR [NR]	N
663	chr11	10247895	10247896	rs2218305	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs2218305-?	NR	9E-11				NR [NR]	N
663	chr11	10247895	10247896	rs2218305	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.4		rs2218305-?	NR	1E-10				NR [NR]	N
663	chr11	10249664	10249668	rs568645819	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11p15.4	SBF2	rs568645819-C	0.0511	1E-23		0.08671543	[0.07-0.104] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr11	10249664	10249668	rs568645819	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11p15.4	SBF2	rs568645819-C	0.0511	5E-27		0.09256556	[0.076-0.109] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr11	10254782	10254783	rs1372812	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs1372812-?	NR	7E-8				Affymetrix [NR]	N
663	chr11	10255107	10255108	rs7122026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p15.4		rs7122026-A	NR	1E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
663	chr11	10261268	10261269	rs7124401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.4		rs7124401-?	NR	3E-11				NR [~ 8900000] (imputed)	N
663	chr11	10262550	10262551	rs11042685	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	11p15.4	SBF2	rs11042685-C	0.493	2E-8	(EA)	0.011	[0.0071-0.0149] unit increase	NR [12082474] (imputed)	N
663	chr11	10267754	10267755	rs61889797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs61889797-T	NR	6E-11		0.0427	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
663	chr11	10268592	10268593	rs56352102	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p15.4	SBF2	rs56352102-?	NR	3E-12		0.0550159	NR unit decrease	Affymetrix [464137]	N
663	chr11	10274380	10274381	rs72850439	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	11p15.4		rs72850439-A	0.2859948	1E-7		1.09		Affymetrix [15650645] (imputed)	N
663	chr11	10275119	10275120	rs1470260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs1470260-?	NR	7E-32				NR [~ 8900000] (imputed)	N
663	chr11	10279240	10279241	rs117793618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	SBF2	rs117793618-G	0.061286	1E-10		0.033251677	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr11	10279240	10279241	rs117793618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	SBF2	rs117793618-G	0.061292	1E-9		0.031878833	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr11	10279240	10279241	rs117793618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	SBF2	rs117793618-G	0.061294	1E-10		0.033506896	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr11	10286754	10286755	rs4450168	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	11p15.4	NR	rs4450168-C	0.17	1E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
663	chr11	10294313	10294313	rs140871661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.4	SBF2	rs140871661-AAAT	NR	2E-8		0.0167487	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
663	chr11	10295650	10295651	rs11042714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.4	SBF2	rs11042714-T	NR	4E-12		0.0196687	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
663	chr11	10296220	10296221	rs113139575	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	11p15.4	SBF2	rs113139575-C	NR	6E-10		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
663	chr11	10296220	10296221	rs113139575	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	11p15.4	SBF2	rs113139575-C	0.9366	1E-9		0.0248385	[0.017-0.033] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
663	chr11	10296835	10296836	rs17368443	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	11p15.4	SBF2	rs17368443-C	0.061	3E-9		0.02071	[0.014-0.028] unit increase	Affymetrix [11709857] (imputed)	N
663	chr11	10300794	10300795	rs2957674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p15.4	SBF2	rs2957674-T	NR	6E-10		0.0200138	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
663	chr11	10300794	10300795	rs2957674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.4	SBF2	rs2957674-T	NR	4E-10		0.0202523	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
663	chr11	10302920	10302921	rs61889838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs61889838-T	0.296734	9E-12				Affymetrix, Illumina [23114412] (imputed)	N
663	chr11	10303938	10303939	rs11042717	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.4	SBF2	rs11042717-T	0.5104	4E-53		0.029	[0.025-0.033] unit increase	Affymetrix [18391927] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	9E-10		0.0258622	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	9E-10		0.0258622	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	7E-9		0.0242809	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	7E-9		0.0242809	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-10		0.0252213	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-10		0.0252213	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	5E-10		0.0245043	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	5E-10		0.0245043	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	1E-11		0.0287608	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	1E-11		0.0287608	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-14		0.0324316	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-14		0.0324316	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-12		0.0296887	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306468	10306468	rs545453593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs545453593-G,rs545453593-G	0.464129	2E-12		0.0296887	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
663	chr11	10306469	10306469	rs34656701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p15.4		rs34656701-GT	NR	1E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
663	chr11	10307713	10307717	rs201737825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p15.4	SBF2	rs201737825-G	0.368428	3E-9		0.013896181	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
663	chr11	10317741	10317742	rs114350711	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.4	SBF2, ADM	rs114350711-?		4E-8		1.2099	[0.78-1.64] unit increase	Illumina [31500000] (imputed)	N
663	chr11	10320607	10320608	rs12419064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs12419064-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
663	chr11	10320607	10320608	rs12419064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.4		rs12419064-?	NR	2E-17				NR [~ 8900000] (imputed)	N
663	chr11	10320660	10320661	rs4345958	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.4	NR	rs4345958-A	0.2764	3E-6	(EA)	0.0322	[0.019-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
663	chr11	10322719	10322720	rs57153895	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	11p15.4	NR	rs57153895-G	0.489723	4E-13		0.0702065	[0.051-0.089] unit decrease	Affymetrix [21375087] (imputed)	N
663	chr11	10331663	10331664	rs4444073	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11p15.4	AMPD3	rs4444073-A	0.558315	4E-8				Affymetrix, Illumina [NR] (imputed)	N
663	chr11	10331663	10331664	rs4444073	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p15.4	ADM	rs4444073-A	0.520317	3E-15		0.020182	[0.015-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
663	chr11	10342710	10342711	rs1562782	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	11p15.4	NR	rs1562782-?	NR	2E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
663	chr11	10350537	10350538	rs7129220	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	ADM, AMPD3	rs7129220-G		6E-6	(EA)	0.43	unit decrease	Affymetrix [at least 2696785] (imputed)	N
663	chr11	10350537	10350538	rs7129220	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.4	ADM, AMPD3	rs7129220-G		5E-7		0.454	unit decrease	Affymetrix [at least 2696785] (imputed)	N
663	chr11	10350537	10350538	rs7129220	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	ADM, AMPD3	rs7129220-G		1E-20		0.573	unit decrease	Affymetrix [at least 2696785] (imputed)	N
663	chr11	10350537	10350538	rs7129220	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	ADM, AMPD3	rs7129220-G		6E-13		0.296	unit decrease	Affymetrix [at least 2696785] (imputed)	N
663	chr11	10350537	10350538	rs7129220	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.4	ADM, AMPD3	rs7129220-G		2E-13		0.276	unit decrease	Affymetrix [at least 2696785] (imputed)	N
663	chr11	10350537	10350538	rs7129220	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11p15.4	ADM	rs7129220-G	0.89	3E-12		0.619	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
663	chr11	10350537	10350538	rs7129220	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11p15.4	ADM	rs7129220-G	0.89	6E-8		0.299	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
663	chr11	10350537	10350538	rs7129220	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.4	ADM	rs7129220-G	0.87	4E-7	(Pulse Pressure)	0.38	[0.23-0.53] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
663	chr11	10352174	10352175	rs2957683	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p15.4	NR	rs2957683-C	0.527665	6E-9		0.016475	[0.011-0.022] unit increase	Affymetrix [16577313] (imputed)	N
663	chr11	10352294	10352295	rs2084600	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.4	CAND1.11	rs2084600-G	0.5568	2E-12		0.2336	[0.17-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
663	chr11	10353716	10353717	rs7111987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.4	AMPD3	rs7111987-A	NR	3E-10		0.0185343	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
664	chr11	10356114	10356115	rs1450271	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.4	ADM	rs1450271-T	0.468	3E-12		0.413	[0.3-0.53] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
664	chr11	10356114	10356115	rs1450271	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.4	ADM	rs1450271-T	0.468	4E-8		0.199	[0.13-0.27] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
664	chr11	10358094	10358095	rs11599958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p15.4	AMPD3	rs11599958-T	0.2886	1E-9		0.0148001155	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr11	10358138	10358139	rs2403309	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p15.4		rs2403309-A	0.530074	2E-8		0.0221589	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
664	chr11	10358627	10358628	rs7944291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11p15.4		rs7944291-T	0.616681	2E-9		0.0260532	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
664	chr11	10358654	10358655	rs7944299	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	11p15.4		rs7944299-A	0.4	5E-35		0.1304	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
664	chr11	10360933	10360934	rs2923093	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	11p15.4	NR	rs2923093-A	0.4	2E-8		0.018	[0.012-0.024] z score increase	Affymetrix [up to 10400000] (imputed)	N
664	chr11	10363156	10363157	rs4494298	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	11p15.4		rs4494298-A	0.73	3E-63		0.155	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
664	chr11	10365043	10365044	rs2923097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.4	AMPD3	rs2923097-T	NR	1E-9		0.0174204	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
664	chr11	10365043	10365044	rs2923097	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p15.4	NR	rs2923097-?	NR	6E-8	(male)	0.19178	[0.12-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
664	chr11	10365043	10365044	rs2923097	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p15.4	NR	rs2923097-?	NR	3E-11		0.14918	[0.11-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
664	chr11	10366028	10366029	rs9704692	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.4	AMPD3	rs9704692-C	0.536084	5E-8		0.010884	[0.007-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
664	chr11	10367568	10367568	rs751075734	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11p15.4	NR	rs751075734-T	0.410097	3E-20		0.0636332	[0.05-0.077] unit decrease	Affymetrix [17914406] (imputed)	N
664	chr11	10368118	10368119	rs2957692	23381795	Verweij N	2013-02-04	Hypertension	Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1.	Circulating vasoactive peptide levels	3,444 European ancestry individuals	3,230 European ancestry individuals	11p15.4	ADM	rs2957692-G	0.40	1E-12	(ADM)	0.015	[0.011-0.019] nmol/l decrease	Illumina [2269099] (imputed)	N
664	chr11	10368975	10368976	rs2044782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.4	AMPD3	rs2044782-G	NR	1E-10		0.0207618	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
664	chr11	10370419	10370420	rs1580004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p15.4	NR	rs1580004-C	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
664	chr11	10370419	10370420	rs1580004	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p15.4	CAND1.11	rs1580004-?	NR	2E-10		0.03915954	NR unit increase	Affymetrix [464137]	N
664	chr11	10370633	10370634	rs1580005	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11p15.4		rs1580005-T	0.522161	2E-8		0.0210582	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
664	chr11	10370633	10370634	rs1580005	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11p15.4		rs1580005-T	0.522161	2E-8		0.0210022	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
664	chr11	10370633	10370634	rs1580005	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11p15.4		rs1580005-T	0.522161	1E-8		0.0213168	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
664	chr11	10370674	10370675	rs1580006	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11p15.4	ADM	rs1580006-A	0.54	7E-14		0.19	unit decrease	Illumina [5270624] (imputed)	N
664	chr11	10373075	10373076	rs182264490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	AMPD3	rs182264490-C	0.00541000000000003	1E-9		0.09882817	[0.067-0.131] unit increase	Affymetrix [93095623] (imputed)	N
664	chr11	10380827	10380828	rs2218793	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11p15.4	AMPD3	rs2218793-?	0.2871	1E-13		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
664	chr11	10380827	10380828	rs2218793	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	11p15.4		rs2218793-A	0.3	2E-17		0.082	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
664	chr11	10380827	10380828	rs2218793	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.4	AMPD3	rs2218793-C	0.71772	1E-12		0.0150235	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
664	chr11	10381765	10381766	rs2923078	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.4	AMPD3	rs2923078-A	0.717646	6E-18		0.0187948	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
664	chr11	10383322	10383324	rs34383321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p15.4		rs34383321-A	NR	4E-12		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
664	chr11	10384302	10384303	rs12793175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs12793175-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
664	chr11	10386475	10386476	rs2860284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.4		rs2860284-?	NR	3E-11				NR [~ 8900000] (imputed)	N
664	chr11	10388781	10388782	rs2923084	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11p15.4	AMPD3	rs2923084-A	0.847	3E-6	(Trans-ethnic initial)	0.0256	[0.017-0.034] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
664	chr11	10388781	10388782	rs2923084	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p15.4	AMPD3	rs2923084-G	0.18	5E-8		0.026	[NR] unit decrease	NR [NR] (imputed)	N
664	chr11	10388781	10388782	rs2923084	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11p15.4	AMPD3, ADM	rs2923084-G	0.17	5E-8		0.41	[0.21-0.61] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
664	chr11	10390580	10390581	rs6484218	20713499	Huang J	2010-08-16	Am J Psychiatry	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	11p15.4	ADM	rs6484218-A	0.14	4E-8				Affymetrix, Perlegen [1574154] (imputed)	N
664	chr11	10393467	10393468	rs2957658	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.4	AMPD3	rs2957658-A	NR	5E-8		0.0171265	[0.011-0.023] unit decrease	Affymetrix [127266] (imputed)	N
664	chr11	10393467	10393468	rs2957658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs2957658-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
664	chr11	10393467	10393468	rs2957658	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p15.4	NA	rs2957658-A	0.4912	2E-10		0.0125	[0.0086-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
664	chr11	10396502	10396503	rs146853004	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11p15.4		rs146853004-A	0.012547	6E-6		0.13588	[0.077-0.195] unit decrease	Affymetrix [15580782] (imputed)	N
664	chr11	10398192	10398193	rs2923125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	11p15.4	NR	rs2923125-A	0.5028	1E-9		0.0109	[0.0074-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
664	chr11	10398305	10398306	rs2957664	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p15.4	NR	rs2957664-G	0.501053	6E-11		0.0133918	[0.0094-0.0174] unit decrease	NR [NR]	N
664	chr11	10402987	10402988	rs2957666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.4		rs2957666-?	NR	2E-13				NR [~ 8900000] (imputed)	N
664	chr11	10404381	10404382	rs2957668	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p15.4		rs2957668-T	0.47	2E-12				NR [NR] (imputed)	N
664	chr11	10404381	10404382	rs2957668	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p15.4		rs2957668-T	0.47	4E-13		0.011	% increase	NR [NR] (imputed)	N
664	chr11	10405199	10405200	rs183113788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	AMPD3	rs183113788-A	0.00564299999999995	1E-9		0.09670744	[0.066-0.128] unit increase	Affymetrix [93095623] (imputed)	N
664	chr11	10406463	10406464	rs12226039	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.4	AMPD3	rs12226039-T	0.5724	2E-14		0.0151	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
664	chr11	10424938	10424939	rs10840403	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.4	NR	rs10840403-?	NR	3E-6				Affymetrix [NR]	N
664	chr11	10447916	10447917	rs10770117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs10770117-?	NR	9E-8				NR [~ 8900000] (imputed)	N
664	chr11	10450587	10450588	rs11042800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.4	NR	rs11042800-T	NR	4E-9		0.0437	[0.029-0.058] unit increase	Affymetrix [9000000] (imputed)	N
664	chr11	10458595	10458596	rs1450270	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs1450270-?		2E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10458595	10458596	rs1450270	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs1450270-?		2E-13	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10463107	10463108	rs7119498	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs7119498-?		4E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10466453	10466454	rs35862435	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs35862435-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10466473	10466474	rs72856182	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	11p15.4	AMPD3	rs72856182-?		1E-6				Illumina [7405822] (imputed)	N
664	chr11	10473888	10473889	rs11042811	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs11042811-?		6E-12	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
664	chr11	10475369	10475370	rs7949917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.4	AMPD3	rs7949917-A	0.596178	4E-9		0.013272054	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
664	chr11	10475369	10475370	rs7949917	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs7949917-?		9E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10475966	10475967	rs4909932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.4	NR	rs4909932-G	0.59811	2E-13		0.013829	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
664	chr11	10476688	10476689	rs899013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs899013-G	0.626473	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
664	chr11	10476688	10476689	rs899013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.4		rs899013-?	NR	2E-8				NR [~ 8900000] (imputed)	N
664	chr11	10477126	10477127	rs899010	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs899010-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
664	chr11	10477126	10477127	rs899010	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs899010-?		1E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10478507	10478508	rs930672	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs930672-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10481666	10481667	rs936513	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs936513-?		1E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
664	chr11	10481666	10481667	rs936513	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs936513-?		1E-17	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
665	chr11	10486186	10486187	rs7944154	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs7944154-?		1E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
665	chr11	10491740	10491741	rs10840422	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs10840422-?		3E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
665	chr11	10492319	10492320	rs12786914	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs12786914-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
665	chr11	10494131	10494132	rs12800954	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs12800954-?		6E-11	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
665	chr11	10505208	10505209	rs11042841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.4		rs11042841-?	NR	2E-10				NR [~ 8900000] (imputed)	N
665	chr11	10506254	10506255	rs10770119	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.4	NR	rs10770119-?		5E-13	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
665	chr11	10507980	10507981	rs11042846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs11042846-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
665	chr11	10508807	10508808	rs144613367	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	11p15.4		rs144613367-?	NR	5E-11		0.125273	[0.085-0.165] unit decrease	NR [9800000] (imputed)	N
665	chr11	10508902	10508903	rs117706710	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	11p15.4		rs117706710-?	NR	7E-25		0.106234	[0.085-0.127] unit decrease	NR [9800000] (imputed)	N
665	chr11	10508902	10508903	rs117706710	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	11p15.4		rs117706710-?	NR	5E-24		0.103055	[0.082-0.124] unit decrease	NR [9800000] (imputed)	N
665	chr11	10508902	10508903	rs117706710	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	11p15.4		rs117706710-?	NR	3E-13		0.0765387	[0.055-0.098] unit decrease	NR [9800000] (imputed)	N
665	chr11	10508902	10508903	rs117706710	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	11p15.4		rs117706710-?	NR	1E-49		0.155083	[0.13-0.18] unit increase	NR [9800000] (imputed)	N
665	chr11	10508902	10508903	rs117706710	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p15.4	AMPD3	rs117706710-T	0.0091	5E-8		0.0456	[0.029-0.062] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.00909599999999999	2E-15		0.093824126	[0.071-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.00909599999999999	2E-19		0.1062143	[0.083-0.129] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.0091	2E-15		0.09333229	[0.07-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.0091	1E-18		0.10374637	[0.081-0.127] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.00908200000000003	1E-12		0.082924955	[0.06-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	AMPD3	rs117706710-T	0.00908600000000004	1E-10		0.07496775	[0.052-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr11	10508902	10508903	rs117706710	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	AMPD3	rs117706710-T		8E-15		0.081	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
665	chr11	10558776	10558777	rs7938782	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	11p15.4	RNF141	rs7938782-A	0.8776	2E-9		0.087	[0.059-0.115] unit increase	NR [7784415] (imputed)	N
665	chr11	10581190	10581191	rs17318955	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	MRVI1	rs17318955-?	NR	5E-6	(TAG 50:2)	0.23303074	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
665	chr11	10611718	10611719	rs116573529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LYVE1	5,330 Icelandic ancestry individuals	NA	11p15.4		rs116573529-A	0.0495	1E-19		0.318506	[0.25-0.39] unit increase	Illumina [7506463] (imputed)	N
665	chr11	10612545	10612546	rs76224505	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	11p15.4		rs76224505-T	0.051	3E-8		0.2023	[0.13-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
666	chr11	10619040	10619041	rs114527818	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.4	LYVE1	rs114527818-T	0.9509375	3E-11	(LYVE1, 3206_4_2)	0.36940503	[0.26-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
666	chr11	10655020	10655021	rs12360799	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs12360799-?	NR	3E-9	(right lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10655622	10655623	rs11042902	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11p15.4	MRVI1	rs11042902-T	0.307493153227426	6E-9		0.041330516	[0.027-0.055] unit increase	Affymetrix [35186738] (imputed)	N
666	chr11	10655622	10655623	rs11042902	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11p15.4	MRVI1	rs11042902-T	0.3	2E-10				NR [> 9500000] (imputed)	N
666	chr11	10655622	10655623	rs11042902	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11p15.4	MRVI1	rs11042902-T	0.29993800000000004	4E-9		1.0395753	[1.02624203689308-1.05308191636175]	NR [9572556] (imputed)	N
666	chr11	10657738	10657739	rs1863244	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs1863244-?	NR	4E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10657738	10657739	rs1863244	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs1863244-?		4E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
666	chr11	10660839	10660840	rs7936275	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11p15.4	NR	rs7936275-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
666	chr11	10660839	10660840	rs7936275	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11p15.4	MRVI1	rs7936275-T	0.288214	2E-8		1.038229	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
666	chr11	10664032	10664033	rs2052690	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11p15.4	MRVI1	rs2052690-?	NR	1E-11		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
666	chr11	10664032	10664033	rs2052690	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11p15.4	MRVI1	rs2052690-T	NR	1E-7		1.041	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
666	chr11	10665234	10665235	rs11042906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.4		rs11042906-?	NR	2E-14				NR [~ 8900000] (imputed)	N
666	chr11	10667274	10667275	rs6484437	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs6484437-?		2E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
666	chr11	10667274	10667275	rs6484437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.4		rs6484437-?	NR	1E-11				NR [~ 8900000] (imputed)	N
666	chr11	10667640	10667641	rs2052692	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p15.4	NR	rs2052692-?	NR	3E-12				NR [up to 7000000]	N
666	chr11	10667640	10667641	rs2052692	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p15.4	NR	rs2052692-?	NR	1E-24				NR [up to 7000000]	N
666	chr11	10667640	10667641	rs2052692	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p15.4	NR	rs2052692-?	NR	6E-17				NR [up to 7000000]	N
666	chr11	10667640	10667641	rs2052692	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p15.4	NR	rs2052692-?	NR	5E-31				NR [up to 7000000]	N
666	chr11	10669171	10669172	rs4442541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.4	MRVI1	rs4442541-G	0.690066	1E-17		0.020752013	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
666	chr11	10669171	10669172	rs4442541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs4442541-G	0.757745	4E-27				Affymetrix, Illumina [24588908] (imputed)	N
666	chr11	10669171	10669172	rs4442541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.4	NR	rs4442541-G	0.688313	4E-27		0.021271	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
666	chr11	10669171	10669172	rs4442541	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs4442541-?	NR	4E-9	(right lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10669227	10669228	rs7940646	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs7940646-?	NR	2E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10669227	10669228	rs7940646	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	11p15.4	MRVI1	rs7940646-C	0.662	2E-6	(ADP high 1)	0.131	[0.078-0.184] unit decrease	Illumina [129094]	N
666	chr11	10669227	10669228	rs7940646	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	11p15.4	MRVI1	rs7940646-T	0.381	1E-6	(ADP)			Affymetrix, Illumina [~ 2330000] (imputed)	N
666	chr11	10673738	10673739	rs4909945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4	MRVI1	rs4909945-C	0.690781	3E-33		0.029178174	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr11	10673738	10673739	rs4909945	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p15.4	MRVI1	rs4909945-T		1E-9		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
666	chr11	10673738	10673739	rs4909945	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.4	MRVI1	rs4909945-T	0.310171	1E-9		0.0130351	[0.0088-0.0172] unit decrease	Affymetrix [NR] (imputed)	N
666	chr11	10673738	10673739	rs4909945	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	11p15.4	MRVI1	rs4909945-C	NR	5E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix [9304965] (imputed)	N
666	chr11	10673738	10673739	rs4909945	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	11p15.4	MRVI1	rs4909945-C	0.668	6E-6	(ADP low 1)	0.113	[0.064-0.162] unit decrease	Illumina [129094]	N
666	chr11	10673738	10673739	rs4909945	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	11p15.4	MRVI1	rs4909945-C	0.665	8E-7	(ephinephrine high 2)	0.126	[0.075-0.177] unit decrease	Illumina [129094]	N
666	chr11	10673738	10673739	rs4909945	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	11p15.4	MRVI1	rs4909945-C	0.665	4E-6	(ephinephrine low 2)	0.118	[0.069-0.167] unit decrease	Illumina [129094]	N
666	chr11	10673738	10673739	rs4909945	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	11p15.4	MRVI1	rs4909945-C	0.659	6E-7	(ephinephrine high 1)	0.149	[0.09-0.208] unit decrease	Illumina [129094]	N
666	chr11	10673738	10673739	rs4909945	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	11p15.4	intergenic	rs4909945-?	0.67	2E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
666	chr11	10674043	10674044	rs4910165	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.4		rs4910165-C	0.31	2E-17		8.48	z score increase	Affymetrix [9061022] (imputed)	N
666	chr11	10674043	10674044	rs4910165	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p15.4	NR	rs4910165-C	0.3133	4E-16				NR [9056863] (imputed)	N
666	chr11	10674043	10674044	rs4910165	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.4	NR	rs4910165-C	0.3133	1E-13				NR [9056863] (imputed)	N
666	chr11	10674043	10674044	rs4910165	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11p15.4	MRVI1	rs4910165-?	0.3212	4E-16		1.03	[1.03-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
666	chr11	10674043	10674044	rs4910165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.4	NR	rs4910165-C	0.301005	4E-52				Affymetrix, Illumina [17210439] (imputed)	N
666	chr11	10674043	10674044	rs4910165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.4	NR	rs4910165-C	0.310733	1E-53		0.031866	[0.028-0.036] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
666	chr11	10674043	10674044	rs4910165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11p15.4		rs4910165-?	NR	2E-9				NR [~ 8900000] (imputed)	N
666	chr11	10674043	10674044	rs4910165	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	11p15.4	MRVI1	rs4910165-?	0.67	3E-11		1.0638298	[1.02-1.1]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
666	chr11	10674043	10674044	rs4910165	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	11p15.4	MRVI1, CTR9	rs4910165-?	NR	2E-9		1.05	[1.033-1.067]	Illumina [13763073] (imputed)	N
666	chr11	10675737	10675738	rs10840457	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.4		rs10840457-A	0.31	5E-10		6.23	z score increase	Affymetrix [9061022] (imputed)	N
666	chr11	10675737	10675738	rs10840457	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	11p15.4	MRVI1	rs10840457-A	0.314	3E-8		0.024	[0.016-0.032] unit decrease	Affymetrix [~ 10446505] (imputed)	N
666	chr11	10675781	10675781	rs34624515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.4		rs34624515-AC	NR	6E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
666	chr11	10679440	10679441	rs1544861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.4	MRVI1	rs1544861-C	0.666002	4E-17		0.019812101	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
666	chr11	10679440	10679441	rs1544861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.4	MRVI1	rs1544861-C	0.665967	7E-16		0.019010631	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
666	chr11	10679440	10679441	rs1544861	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs1544861-?	NR	2E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
666	chr11	10682247	10682248	rs10770131	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs10770131-?	NR	5E-11	(right lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10682247	10682248	rs10770131	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs10770131-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
666	chr11	10684059	10684060	rs7947953	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11p15.4	NR	rs7947953-G	0.6123	1E-8		0.001311	[0.00086-0.00177] unit increase	Affymetrix [NR] (imputed)	N
666	chr11	10684195	10684196	rs7951153	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.4	NR	rs7951153-?	NR	4E-12	(left lateral ventricle)			NR [9227495] (imputed)	N
666	chr11	10692171	10692172	rs12363520	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p15.4	NR	rs12363520-?		1E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
666	chr11	10695945	10695946	rs1863245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.4	MRVI1	rs1863245-C	0.610805	3E-10		0.014202437	[0.0098-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
666	chr11	10708488	10708489	rs719152	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11p15.4	MRVI1	rs719152-G	0.2947	5E-15		0.0312563	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr11	10711414	10711415	rs4909947	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	11p15.4	MRVI1	rs4909947-G	0.10	7E-6	(female)	0.0525	[0.03-0.075] unit decrease	Illumina [6380737] (imputed)	N
666	chr11	10722737	10722738	rs73415773	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.4	NR	rs73415773-?		9E-7				Illumina [4322238] (imputed)	N
666	chr11	10740365	10740366	rs2018368	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11p15.4	NR	rs2018368-?	NR	1E-6		1.2392	[NR]	Affymetrix [722112]	N
666	chr11	10745393	10745394	rs11042937	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.4	intergenic	rs11042937-T	0.5016	3E-10		0.0403	[0.028-0.053] unit increase	NR [8041861] (imputed)	N
667	chr11	10752984	10752985	rs73417722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.4		rs73417722-C	0.019315	7E-12		0.056820355	[0.041-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
667	chr11	10779845	10779846	rs188558150	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	11p15.4	CTR9	rs188558150-G	NR	4E-8		0.364	[0.23-0.49] unit increase	NR [11024754] (imputed)	N
667	chr11	10791982	10791983	rs2132517	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	11p15.4	NA	rs2132517-A	0.25	5E-6		0.1707	[0.07411-0.3933]	Illumina [243345]	N
667	chr11	10800278	10800279	rs141131642	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	11p15.4		rs141131642-?	NR	5E-6		4.80411	[4.13-5.48]	NR [666300]	N
668	chr11	10921511	10921512	rs7932891	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.4	NR	rs7932891-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
668	chr11	10921511	10921512	rs7932891	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.4	NR	rs7932891-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
668	chr11	10921511	10921512	rs7932891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.4		rs7932891-?	NR	3E-11				NR [~ 8900000] (imputed)	N
668	chr11	10921511	10921512	rs7932891	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11p15.4	NR	rs7932891-A	0.2954	1E-12		0.0141	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
668	chr11	10921511	10921512	rs7932891	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11p15.4	NR	rs7932891-A	0.2954	1E-8		0.0113	[0.0074-0.0152] unit increase	NR [~ 27400000] (imputed)	N
668	chr11	10922032	10922033	rs16908520	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.4	ZBED5-AS1	rs16908520-A	0.819833	5E-16		0.0194169	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
668	chr11	10922032	10922033	rs16908520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.4		rs16908520-?	NR	2E-17				NR [~ 8900000] (imputed)	N
668	chr11	10922032	10922033	rs16908520	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.4		rs16908520-?	NR	4E-15		0.0194693	[0.014-0.025] unit increase	Affymetrix [20259828] (imputed)	N
668	chr11	10972849	10972850	rs188188267	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p15.4	Intergenic	rs188188267-T	NR	5E-7	(between families)	5.024	unit increase	Affymetrix [up to 15107142] (imputed)	N
669	chr11	11012331	11012332	rs10770152	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	11p15.4	NR	rs10770152-T	0.368932	3E-6		0.6548911	[0.4-0.91] unit decrease	Illumina [at least 621854] (imputed)	N
669	chr11	11014075	11014076	rs79697311	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea during REM sleep (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	11p15.4	intergenic	rs79697311-C		4E-7	(women)	0.692	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
669	chr11	11051697	11051698	rs183470090	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Paenibacillales abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs183470090-T	0.0131159	3E-8		0.043781	[0.028-0.059] unit increase	Illumina [7980478] (imputed)	N
669	chr11	11051697	11051698	rs183470090	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Firmicutes I abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs183470090-T	0.0131159	3E-8		0.0327441	[0.021-0.044] unit increase	Illumina [7980478] (imputed)	N
669	chr11	11051697	11051698	rs183470090	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacilli A abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs183470090-T	0.0131159	3E-8		0.0414389	[0.027-0.056] unit increase	Illumina [7980478] (imputed)	N
669	chr11	11098675	11098676	rs1124694	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	11p15.4	ZBED5AS1, GALNT18	rs1124694-G	0.331	4E-8		0.00977	[0.0063-0.0133] unit increase	Affymetrix [11709857] (imputed)	N
669	chr11	11105661	11105662	rs274508	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	11p15.4	GALNT18, ZBED5	rs274508-C	0.32	6E-6		1.1904762	[1.11-1.3]	Illumina [at least 8248570] (imputed)	N
669	chr11	11109238	11109239	rs1910505	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	11p15.4	intergenic	rs1910505-?	NR	4E-6	(Additive model)	0.3	unit increase	Illumina [542562]	N
669	chr11	11120205	11120206	rs17344770	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	11p15.4	intergenic	rs17344770-T	0.10	2E-6		1.36	[0.81-1.91] unit increase	Illumina [6380737] (imputed)	N
669	chr11	11120205	11120206	rs17344770	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	11p15.4	intergenic	rs17344770-T	0.10	1E-6		56.8	[34.06-79.54] unit increase	Illumina [6380737] (imputed)	N
669	chr11	11141039	11141040	rs11043104	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1407 abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs11043104-G	0.0328958	9E-9		0.0739371	[0.049-0.099] unit increase	Illumina [7980478] (imputed)	N
670	chr11	11145613	11145614	rs180710957	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Pseudomonadales abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.4		rs180710957-A	0.0182384	1E-8		0.046048	[0.03-0.062] unit increase	Illumina [7980478] (imputed)	N
670	chr11	11151465	11151466	rs7122257	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	11p15.4	NR	rs7122257-?	NR	7E-10	(cAMP-dependent protein kinase catalytic subunit alpha)			Illumina [514227]	N
670	chr11	11176614	11176615	rs4910264	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	11p15.4	LOC105376548, LOC105376550	rs4910264-?	NR	3E-6				Illumina [1539908]	N
670	chr11	11180864	11180865	rs1001949	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Pigment spots (darkness)	1,108 Japanese ancestry individuals	NA	11p15.4		rs1001949-G	0.221	4E-8		0.37	[0.24-0.5] unit increase	Illumina [6258233] (imputed)	N
670	chr11	11228373	11228374	rs2722769	22238593	Palmer ND	2012-01-04	PLoS One	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	11p15.4	GALNTL4, LOC729013	rs2722769-C	0.53	2E-6		1.35	[1.19-1.54]	Affymetrix [832357]	N
670	chr11	11253924	11253925	rs6484765	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.4	EIF4G2	rs6484765-?	NR	3E-6	(SM 22:1)	0.21785495	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
670	chr11	11254906	11254907	rs10741534	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.4	GALNT18	rs10741534-T	0.09	1E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
670	chr11	11261399	11261400	rs4076943	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p15.4	Intergenic	rs4076943-T	0.725	2E-7	(AA)	0.094	NR unit decrease	Illumina [NR] (imputed)	N
671	chr11	11337988	11337989	rs61872397	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GALNT18	rs61872397-?	NR	6E-13	(male)	2.4766	[NR] unit decrease	Affymetrix [NR] (imputed)	N
671	chr11	11338062	11338063	rs4444072	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11p15.4		rs4444072-?	NR	2E-6		0.9533222	[0.934863979549368-0.972144814996477]	Illumina [7827597] (imputed)	N
671	chr11	11358735	11358736	rs61872414	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GALNT18	rs61872414-?	NR	4E-13		2.32927	[NR] unit decrease	Affymetrix [NR] (imputed)	N
671	chr11	11360295	11360296	rs115825287	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	11p15.4	GALNT18	rs115825287-T	NR	4E-7		1.43	[1.33-1.53]	Affymetrix, Illumina [~ 16900000] (imputed)	N
671	chr11	11385772	11385773	rs184216160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.4		rs184216160-G	NR	3E-8		0.4426	[0.29-0.6] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
671	chr11	11395488	11395489	rs10047474	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,253 European ancestry individuals	NA	11p15.4	GALNT18	rs10047474-T	0.457	4E-7				NR [2411113] (imputed)	N
671	chr11	11395488	11395489	rs10047474	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure	6,253 European ancestry individuals	NA	11p15.4	GALNT18	rs10047474-T	0.457	1E-300		1.81	[1.14-2.48] unit increase	NR [~ 24000000] (imputed)	N
671	chr11	11398284	11398285	rs2129530	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11p15.4	NR	rs2129530-?		9E-6	(EA)			Illumina [~ 5140000] (imputed)	N
671	chr11	11398358	11398359	rs2129532	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11p15.4	NR	rs2129532-?		4E-6	(EA)			Illumina [~ 5140000] (imputed)	N
671	chr11	11399691	11399692	rs1994399	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	11p15.4	GALNT18	rs1994399-G	0.39	5E-6		0.012	NR unit increase	Illumina [1231747]	N
672	chr11	11405401	11405402	rs113420414	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	11p15.4	GALNT18	rs113420414-T	NR	3E-6		1.27	[1.15-1.40]	Affymetrix, Illumina [6265045] (imputed)	N
672	chr11	11476844	11476845	rs12222290	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	11p15.4	intergenic	rs12222290-G	0.503	4E-6	(AA)	0.447	unit decrease	Illumina [at least 5086170] (imputed)	N
672	chr11	11488272	11488273	rs7117543	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	11p15.4	NR	rs7117543-C	0.04539	5E-6		0.3448	[0.26-0.43] unit increase	Illumina [10677593] (imputed)	N
672	chr11	11504227	11504228	rs7940423	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	11p15.4	intergenic	rs7940423-?	0.011	1E-7	(CSJC, RF+)	10.9	[NR] unit decrease	Illumina [534053]	N
673	chr11	11536486	11536487	rs4077732	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms in prion disease	Up to 170 cases	NA	11p15.4	GALNTL4	rs4077732-?	0.33	2E-6		3.33	[2.00-1.25]	Illumina [518938]	N
673	chr11	11592910	11592911	rs9919625	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	11p15.4	GALNTL4	rs9919625-?	NR	2E-6		2.269	[1.38-3.16] unit decrease	Illumina [498648]	N
673	chr11	11592910	11592911	rs9919625	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	11p15.4	GALNTL4	rs9919625-?	NR	2E-6		1.397	[0.84-1.95] unit decrease	Illumina [498648]	N
673	chr11	11593572	11593573	rs77302254	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.4	intergenic	rs77302254-A	0.03	2E-6		3.86	[2.14-6.96]	Illumina [1556551]	N
673	chr11	11660814	11660815	rs10831656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p15.4		rs10831656-T	0.3134	3E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
673	chr11	11660814	11660815	rs10831656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.4	Intergenic	rs10831656-T	0.3134	6E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
674	chr11	11680934	11680935	rs7480726	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to dovitinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	11p15.4		rs7480726-?	NR	7E-7				Illumina [1510701]	N
674	chr11	11682892	11682893	rs7930221	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to dovitinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	11p15.4		rs7930221-?	NR	2E-7				Illumina [1510701]	N
674	chr11	11762320	11762321	rs897356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.3	NR	rs897356-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
674	chr11	11765923	11765924	rs7112160	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	11p15.3		rs7112160-A	NR	8E-6		1.1235	[0.64-1.6] unit increase	Illumina [NR] (imputed)	N
674	chr11	11767236	11767237	rs200063994	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	11p15.3	NR	rs200063994-?	NR	2E-6		0.035	[0.02-0.05] unit increase	Illumina [at least 560000] (imputed)	N
675	chr11	11796896	11796897	rs2054117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.3		rs2054117-?	NR	4E-9				NR [~ 8900000] (imputed)	N
675	chr11	11820448	11820449	rs10831676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p15.3		rs10831676-C	NR	5E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
675	chr11	11820448	11820449	rs10831676	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p15.3	NR	rs10831676-A	0.538817	2E-9		0.0125556	[0.0085-0.0166] unit increase	NR [NR]	N
675	chr11	11847576	11847577	rs529308902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11p15.3	USP47	rs529308902-A	0.9973	1E-6		1.2172	[0.73-1.71] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
675	chr11	11861701	11861702	rs35774554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.3		rs35774554-A	NR	3E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
675	chr11	11863398	11863399	rs113672631	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.3	DKK3	rs113672631-G	0.77421875	5E-8	(DKK3, 3607_71_1)	0.15339164	[0.099-0.208] unit increase	Illumina [> 1000000] (imputed)	N
675	chr11	11916099	11916100	rs12223565	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.3	NR	rs12223565-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
676	chr11	11936360	11936361	rs72857612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.3		rs72857612-?	NR	4E-8				NR [~ 8900000] (imputed)	N
676	chr11	11983884	11983885	rs1472189	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	11p15.3	DKK3	rs1472189-C		8E-6		0.11	[0.06-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
676	chr11	11986060	11986061	rs3206824	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	11p15.3		rs3206824-?	NR	4E-6		0.925242	[0.89-0.96]	NR [682398]	N
676	chr11	11986060	11986061	rs3206824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.3		rs3206824-?	NR	1E-17				NR [~ 8900000] (imputed)	N
676	chr11	11996756	11996757	rs7396140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p15.3		rs7396140-?	NR	3E-8				NR [~ 8900000] (imputed)	N
676	chr11	12001586	12001587	rs10734190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.3	DKK3	rs10734190-T	NR	3E-8		0.0241438	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
676	chr11	12013812	12013813	rs7116879	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to perphenazine in schizophrenia	193 Han Chinese ancestry cases	NA	11p15.3	DKK3	rs7116879-T	NR	3E-6		14.6983	[8.72-20.68] unit decrease	Illumina [6097251] (imputed)	N
676	chr11	12038873	12038874	rs11022114	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK3	5,368 Icelandic ancestry individuals	NA	11p15.3		rs11022114-A	0.3319	8E-31		0.217552	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
676	chr11	12038873	12038874	rs11022114	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK3	5,363 Icelandic ancestry individuals	NA	11p15.3		rs11022114-A	0.3319	1E-25		0.198575	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
676	chr11	12038873	12038874	rs11022114	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.3	DKK3	rs11022114-A	0.328	7E-36	(Dickkopf-related protein 3, DKK3.3607.71.6)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
676	chr11	12048397	12048398	rs923806	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11p15.3		rs923806-?	NR	8E-6	(MLM)	0.6283593	[0.35-0.9] unit increase	Illumina [~ 9000000] (imputed)	N
676	chr11	12048673	12048674	rs4391796	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.3	DKK3	rs4391796-T	0.8271875	9E-6	(DKK3, 10746_24_3)	0.13616717	[0.076-0.196] unit increase	Illumina [> 1000000] (imputed)	N
676	chr11	12050651	12050652	rs11022119	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p15.3	RP13-631K18.2	rs11022119-A	0.2802419	3E-13	(EA, Dickkopf-related protein 3)	0.3298	[0.24-0.42] unit increase	Affymetrix [509946]	N
677	chr11	12070664	12070665	rs16910421	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11p15.3	DKK3	rs16910421-A	0.03	4E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
677	chr11	12071435	12071436	rs11022129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11p15.3		rs11022129-C	NR	2E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
677	chr11	12071546	12071547	rs11022130	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	11p15.3	NR	rs11022130-?		1E-9				NR [7428630] (imputed)	N
677	chr11	12071546	12071547	rs11022130	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p15.3	NR	rs11022130-?		8E-11				NR [7428630] (imputed)	N
677	chr11	12071546	12071547	rs11022130	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.3	NR	rs11022130-?	NR	2E-9	(right cuneus)			NR [9227495] (imputed)	N
677	chr11	12071854	12071855	rs10765918	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.3		rs10765918-G	0.25	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
677	chr11	12071854	12071855	rs10765918	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p15.3	NR	rs10765918-G	0.2667	1E-12				NR [9056863] (imputed)	N
677	chr11	12071854	12071855	rs10765918	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 280)	19,670 European ancestry individuals	NA	11p15.3		rs10765918-?	NR	4E-13				NR [9705931] (imputed)	N
677	chr11	12071854	12071855	rs10765918	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	11p15.3	SDCCAG8, AKT3	rs10765918-?		2E-8				NR [7428630] (imputed)	N
677	chr11	12071854	12071855	rs10765918	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11p15.3	NR	rs10765918-A	0.7284	1E-13	(Cuneus)	7.8244176	[5.75-9.9] unit increase	Affymetrix, Illumina [NR]	N
677	chr11	12071854	12071855	rs10765918	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11p15.3	NR	rs10765918-A	0.7276	2E-17	(Pericalcarine)	10.270173	[7.89-12.65] unit increase	Affymetrix, Illumina [NR]	N
677	chr11	12071854	12071855	rs10765918	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p15.3	NR	rs10765918-?	NR	2E-9	(left pericalcarine)			NR [9227495] (imputed)	N
677	chr11	12072212	12072213	rs11022131	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.3		rs11022131-G	0.22	2E-45		14.15	z score increase	Affymetrix [9061022] (imputed)	N
677	chr11	12072212	12072213	rs11022131	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.3		rs11022131-G	0.22	2E-32		11.88	z score increase	Affymetrix [9061022] (imputed)	N
677	chr11	12072212	12072213	rs11022131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11p15.3		rs11022131-G	NR	7E-50		0.0339	[0.029-0.038] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
677	chr11	12072212	12072213	rs11022131	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.3	NR	rs11022131-G	0.248	1E-17				NR [9056863] (imputed)	N
677	chr11	12072212	12072213	rs11022131	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11p15.3	LINC02547	rs11022131-C	0.751372	5E-70		0.0103133	[0.0091-0.0115] unit increase	Affymetrix [13995440] (imputed)	N
677	chr11	12072212	12072213	rs11022131	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	11p15.3	DKK3	rs11022131-?		6E-12	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
677	chr11	12072212	12072213	rs11022131	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	11p15.3	NR	rs11022131-C	0.761	3E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	6.535948	[NR]	Affymetrix [> 650000] (imputed)	N
677	chr11	12072502	12072503	rs923175	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11p15.3	DKK3	rs923175-?	NR	7E-6				Affymetrix, Illumina [~ 1300000]	N
677	chr11	12087312	12087313	rs1994321	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to selective serotonin reuptake inhibitors and depression	3,340 European ancestry non-responder cases, 191,882  European ancestry healthy controls	NA	11p15.3	DKK3, MICAL2	rs1994321-?		5E-7		1.1547344	[1.09-1.22]	Illumina [~ 12000000] (imputed)	N
677	chr11	12091006	12091007	rs114332009	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.3	intergenic	rs114332009-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
677	chr11	12116418	12116419	rs117140128	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	11p15.3	NR	rs117140128-A	0.01765	2E-6		0.5451	[0.32-0.77] unit increase	Illumina [10677593] (imputed)	N
677	chr11	12123220	12123221	rs10831734	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	11p15.3	MICAL2	rs10831734-A		5E-6		1.336	[0.77-1.91] unit decrease	Illumina [7576458] (imputed)	N
677	chr11	12133477	12133478	rs11022177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.3		rs11022177-G	NR	3E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
677	chr11	12133477	12133478	rs11022177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.3	MICAL2	rs11022177-G	0.310076	3E-11		0.016007045	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr11	12133477	12133478	rs11022177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.3	NR	rs11022177-G	0.311138	3E-19		0.018063	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
677	chr11	12133477	12133478	rs11022177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.3		rs11022177-?	NR	2E-14				NR [~ 8900000] (imputed)	N
677	chr11	12135603	12135604	rs1159649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.3	MICAL2	rs1159649-G	0.315452	2E-10		0.015345387	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr11	12135603	12135604	rs1159649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p15.3	MICAL2	rs1159649-G	0.315405	3E-9		0.014246281	[0.0095-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr11	12135603	12135604	rs1159649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.3	MICAL2	rs1159649-G	0.31543	7E-13		0.017184865	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr11	12135603	12135604	rs1159649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.3	MICAL2	rs1159649-G	0.315443	5E-11		0.0157784	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr11	12135603	12135604	rs1159649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.3	NR	rs1159649-G	0.315669	7E-11		0.013612	[0.0095-0.0177] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
677	chr11	12136311	12136312	rs10831736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs10831736-A	0.678861	6E-20				Affymetrix, Illumina [24649327] (imputed)	N
677	chr11	12136311	12136312	rs10831736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs10831736-A	0.679635	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
677	chr11	12147394	12147395	rs10765924	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.3		rs10765924-?	NR	4E-8				NR [NR]	N
677	chr11	12147394	12147395	rs10765924	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.3		rs10765924-?	NR	3E-8				NR [NR]	N
677	chr11	12147394	12147395	rs10765924	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.3		rs10765924-?	NR	3E-8				NR [NR]	N
677	chr11	12147394	12147395	rs10765924	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p15.3	NR	rs10765924-A	0.2509	5E-6		0.0183	[0.01-0.026] unit decrease	Illumina [NR] (imputed)	N
677	chr11	12147394	12147395	rs10765924	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11p15.3	NR	rs10765924-A	0.23	4E-6		0.018746223	[0.011-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
677	chr11	12147457	12147458	rs4237703	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.3		rs4237703-?	NR	4E-8				NR [NR]	N
677	chr11	12147457	12147458	rs4237703	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p15.3		rs4237703-?	NR	4E-8				NR [NR]	N
677	chr11	12148751	12148752	rs11022188	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	11p15.3	MICAL2	rs11022188-A	NR	5E-6	(adjusted for clinical variables)			Illumina [up to 3935887] (imputed)	N
677	chr11	12159660	12159661	rs1994318	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	11p15.3	MICAL2	rs1994318-A		2E-6		6.79	[NR] ms decrease	Illumina [> 930000]	N
678	chr11	12193256	12193257	rs117250828	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p15.3	Intergenic	rs117250828-A	NR	3E-7	(between families)	5.134	unit decrease	Affymetrix [up to 15107142] (imputed)	N
678	chr11	12208106	12208107	rs7933455	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	11p15.3	NR	rs7933455-?	NR	6E-6		0.0612	[0.035-0.088] unit increase	Illumina [at least 560000] (imputed)	N
678	chr11	12235159	12235160	rs12291066	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	11p15.3	MICAL2	rs12291066-A	0.11	8E-7	(cohort study)	1.45	[1.25-1.69]	Affymetrix, Illumina [up to 2600000] (imputed)	N
678	chr11	12259180	12259181	rs112421686	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	11p15.3	NR	rs112421686-A	0.09	3E-8		0.42	[0.26-0.58] unit increase	Affymetrix [19941912] (imputed)	N
678	chr11	12260711	12260712	rs11604904	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	11p15.3	MICALCL	rs11604904-?	0.201249	7E-6		3.5436242	NR	Illumina [5009928] (imputed)	N
678	chr11	12274528	12274529	rs2706660	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	11p15.3	MICAL2	rs2706660-?	NR	6E-6		3.030303	[1.82-5.26]	Illumina [1057565]	N
679	chr11	12374635	12374636	rs10831801	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	11p15.3	MICALCL	rs10831801-A	0.1969	9E-6	(male)	0.1834	[0.1-0.26] unit increase	NR [NR] (imputed)	N
679	chr11	12387924	12387925	rs2403597	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	11p15.3	MICALCL, PARVA	rs2403597-G	0.140710077	3E-6		1.1187984	[1.067267022-1.172817764]	Illumina [10439017] (imputed)	N
679	chr11	12414711	12414712	rs61875435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11p15.3		rs61875435-?	NR	2E-8				NR [~ 8900000] (imputed)	N
679	chr11	12415076	12415077	rs4757420	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p15.3	NR	rs4757420-T	0.164183	1E-9		0.0253962	[0.017-0.034] unit decrease	NR [19129689] (imputed)	N
680	chr11	12469396	12469397	rs7120489	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	11p15.3	PARVA	rs7120489-A	0.069	7E-6	(EA)	1.35	[0.96-1.90]	Affymetrix [up to 2366858] (imputed)	N
680	chr11	12476123	12476123	rs55992909	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	11p15.3	PARVA	rs55992909-?	NR	6E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
680	chr11	12480086	12480087	rs1346220	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.3	PARVA, MICALCL, TEAD1	rs1346220-G	0.002	2E-6		15.45	[3.42-69.69]	Illumina [1556551]	N
680	chr11	12494300	12494301	rs954123	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	11p15.3	PARVA	rs954123-A	0.43	8E-7		0.52	[0.34-0.70] unit decrease	Illumina [NR] (imputed)	N
680	chr11	12566724	12566725	rs7950518	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Providencia abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.3		rs7950518-A	0.0440401	4E-9		0.0788615	[0.053-0.105] unit increase	Illumina [7980478] (imputed)	N
680	chr11	12566724	12566725	rs7950518	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus A abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.3		rs7950518-A	0.0440401	3E-8		0.0682516	[0.044-0.092] unit increase	Illumina [7980478] (imputed)	N
680	chr11	12578290	12578291	rs933922	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	11p15.3	NR	rs933922-A	0.82	7E-6	(AA)	0.11	[0.061-0.159] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
681	chr11	12594276	12594277	rs117688302	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11p15.3		rs117688302-?	NR	1E-5		1.1095028	[1.05962707802785-1.16172599638062]	Illumina [up to 7827597] (imputed)	N
681	chr11	12622843	12622844	rs140940962	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11p15.3	RP11-51B23.3	rs140940962-T	0.9843	6E-6		0.1637	[0.093-0.235] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
681	chr11	12638231	12638232	rs4237723	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	11p15.3	PARVA, TEAD1	rs4237723-?	0.45	5E-8		18.33	unit increase	Illumina [120975] (imputed)	N
681	chr11	12641390	12641391	rs7128566	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	11p15.3	intergenic	rs7128566-T	0.43	2E-6	(female)	0.081	[0.048-0.114] unit increase	Illumina [6380737] (imputed)	N
681	chr11	12646504	12646505	rs73419826	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	11p15.3	intergenic	rs73419826-?	NR	4E-6		0.746	[0.34-1.15] unit decrease	Illumina [at least 13000000] (imputed)	N
681	chr11	12647770	12647771	rs35209562	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	11p15.3	PARVA, TEAD1	rs35209562-?	NR	3E-6		1.73	1.51-1.94	Illumina [7605010] (imputed)	N
681	chr11	12673336	12673337	rs34527938	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p15.3	TEAD1	rs34527938-A	0.4276	4E-6		0.0303	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
681	chr11	12678414	12678415	rs6485978	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	11p15.3	TEAD1	rs6485978-T	0.544	1E-15		0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
681	chr11	12679244	12679245	rs7931934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.3		rs7931934-G	NR	1E-22		0.0132	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
681	chr11	12685394	12685395	rs11022463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.3		rs11022463-?	NR	5E-40				NR [~ 8900000] (imputed)	N
681	chr11	12698039	12698040	rs7926971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p15.3		rs7926971-?	NR	4E-18				NR [~ 8900000] (imputed)	N
681	chr11	12698039	12698040	rs7926971	26567291	Jensen RA	2015-11-13	Circ Cardiovasc Genet	Novel Genetic Loci Associated With Retinal Microvascular Diameter.	Central retinal vein equivalent	14,740 European ancestry individuals, 5,113 Asian ancestry individuals, 3,345 African American individuals, 1,077 Hispanic individuals	5,472 European ancestry individuals	11p15.3	TEAD1	rs7926971-G	NR	3E-11		0.05	[0.03-0.07] unit increase	Illumina [223566]	N
681	chr11	12698039	12698040	rs7926971	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.3	TEAD1	rs7926971-A	0.55	4E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
681	chr11	12706605	12706606	rs76721656	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.3	NR	rs76721656-G	0.0122	3E-9	(ATP6V1E1)	0.01217	NR unit increase	Illumina [1671387] (imputed)	N
681	chr11	12708613	12708614	rs11600148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.3		rs11600148-?	NR	9E-11				NR [~ 8900000] (imputed)	N
682	chr11	12748818	12748819	rs7945718	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	11p15.3	NR	rs7945718-A	0.615	1E-9		0.013893205	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
682	chr11	12758766	12758767	rs3890065	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11p15.3		rs3890065-C	0.5821	1E-9		47.12932	z score increase	NR [6814003]	N
682	chr11	12758766	12758767	rs3890065	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p15.3	NR	rs3890065-?	NR	1E-6		4.815	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
682	chr11	12794529	12794530	rs3993110	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hand	20,901 European ancestry cases, 282,881 European ancestry controls	NA	11p15.3		rs3993110-A	0.6075	4E-11		1.0857815	[1.05971123-1.112493123]	Affymetrix, Illumina [NR] (imputed)	N
682	chr11	12794945	12794946	rs3915398	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11p15.3	TEAD1	rs3915398-G	0.1116	1E-10		0.020192632	[0.014-0.026] unit decrease	Affymetrix [up to 18485882] (imputed)	N
682	chr11	12807188	12807189	rs61878760	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	11p15.3	NR	rs61878760-A	0.0896	8E-7		0.2499	[0.15-0.35] unit increase	Illumina [7305641] (imputed)	N
682	chr11	12822365	12822366	rs11022505	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11p15.3	TEAD1	rs11022505-G	0.441	1E-9		0.012364928	[0.0084-0.0163] unit increase	Affymetrix [up to 18485882] (imputed)	N
682	chr11	12822365	12822366	rs11022505	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11p15.3	TEAD1	rs11022505-A	NR	5E-10		0.01824479	[0.012-0.024] unit decrease	Affymetrix [NR]	N
682	chr11	12826193	12826194	rs117578199	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p15.3	NR	rs117578199-?	NR	2E-8				Illumina [7760689] (imputed)	N
682	chr11	12831625	12831626	rs35202269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.3	TEAD1	rs35202269-G	NR	5E-8		0.0249033	[0.016-0.034] unit increase	Affymetrix [321016] (imputed)	N
682	chr11	12836323	12836324	rs371148512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p15.3		rs371148512-G	NR	4E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
682	chr11	12838285	12838286	rs2033908	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	11p15.3	NR	rs2033908-A	0.418	6E-6	(EA)	0.045	[0.025-0.065] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
682	chr11	12839526	12839527	rs10466408	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.3	LOC644943	rs10466408-?	NR	2E-6	(taurine)	0.27448824	[0.16-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
682	chr11	12839975	12839976	rs11601792	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.3	TEAD1	rs11601792-A	0.902982	2E-10		0.0197423	[0.014-0.026] unit increase	NR [13737936] (imputed)	N
682	chr11	12841770	12841771	rs12797960	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	11p15.3	NR	rs12797960-?	0.608	1E-8		1.03499	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
682	chr11	12841991	12841992	rs10466378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p15.3		rs10466378-A	NR	7E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
683	chr11	12845834	12845835	rs17409101	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11p15.3	NR	rs17409101-T	0.31832	1E-10		0.0471849	[0.033-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
683	chr11	12856413	12856414	rs10831912	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11p15.3	TEAD1	rs10831912-?	NR	4E-11		0.013660304	[0.0096-0.0177] unit decrease	NR [7306098]	N
683	chr11	12856413	12856414	rs10831912	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p15.3	NR	rs10831912-T	0.399053	9E-9		0.0182896	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
683	chr11	12866145	12866146	rs2099744	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11p15.3	Intergenic	rs2099744-A	0.7108	6E-10	(MTAG)	0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
683	chr11	12866145	12866146	rs2099744	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p15.3	NR	rs2099744-?	NR	6E-7		4.995	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
683	chr11	12867213	12867214	rs1866706	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11p15.3	TEAD1	rs1866706-T	NR	7E-9		0.018780373	[0.012-0.025] unit decrease	Affymetrix [NR]	N
683	chr11	12873768	12873769	rs61878772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.3		rs61878772-G	NR	3E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
683	chr11	12873768	12873769	rs61878772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p15.3	TEAD1	rs61878772-G	0.678907	4E-9		0.014019312	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr11	12873905	12873906	rs7940022	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p15.3		rs7940022-T	0.6914	4E-18	(conditional-joint)	0.0132	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
683	chr11	12875088	12875089	rs1440277	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11p15.3	TEAD1	rs1440277-T	0.3267	3E-10		0.013575712	[0.0094-0.0178] unit increase	Affymetrix [up to 18485882] (imputed)	N
683	chr11	12875311	12875312	rs1866710	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11p15.3	TEAD1	rs1866710-A	0.291918	2E-10		0.0147944	[0.01-0.019] unit decrease	NR [16516521] (imputed)	N
683	chr11	12876491	12876492	rs4757955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.3	NR	rs4757955-A	0.680157	3E-11		0.013344	[0.0094-0.0173] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
683	chr11	12876491	12876492	rs4757955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.3	NR	rs4757955-A	0.67965	5E-13		0.014973	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
683	chr11	12876665	12876666	rs4757956	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	541 Japanese ancestry women	NA	11p15.3	TEAD1	rs4757956-G	0.21	8E-6		0.221	[0.12-0.32] unit decrease	Illumina [545605]	N
683	chr11	12876665	12876666	rs4757956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs4757956-A	0.691495	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
683	chr11	12876665	12876666	rs4757956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11p15.3		rs4757956-?	NR	4E-8				NR [~ 8900000] (imputed)	N
683	chr11	12881397	12881398	rs4757957	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p15.3		rs4757957-G	0.324	1E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
683	chr11	12881397	12881398	rs4757957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p15.3		rs4757957-?	NR	3E-10				NR [~ 8900000] (imputed)	N
683	chr11	12881397	12881398	rs4757957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p15.3		rs4757957-C	0.6911	2E-18		0.0133	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
683	chr11	12881397	12881398	rs4757957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.3	Intergenic	rs4757957-C	0.6911	2E-19	(MTAG)	0.0128	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
683	chr11	12894757	12894758	rs12289262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p15.3	Intergenic	rs12289262-T	0.258	3E-12	(MTAG)	0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
683	chr11	12914978	12914979	rs4757965	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11p15.3	Intergenic	rs4757965-?	NR	3E-7		1.961169	[NR]	Affymetrix [492217] (imputed)	N
683	chr11	12917749	12917750	rs7924536	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	11p15.3	TEAD1, LINC00958	rs7924536-?	NR	6E-7		0.0952	[0.059-0.132] unit increase	Affymetrix, Illumina [NR] (imputed)	N
684	chr11	12983921	12983922	rs543716802	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	11p15.3	LINC00958	rs543716802-A	0.0021	7E-6		1.1272	[0.64-1.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
684	chr11	13007656	13007657	rs78246608	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p15.3	NR	rs78246608-A	NR	2E-6	(African)	0.814	[0.48-1.15] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
684	chr11	13027563	13027564	rs181121546	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	11p15.3		rs181121546-T	NR	1E-6		0.360872	[0.22-0.51] unit increase	Affymetrix [10900000] (imputed)	N
684	chr11	13027563	13027564	rs181121546	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	1,877 women	NA	11p15.3		rs181121546-T	NR	4E-8		0.809562	[0.52-1.1] unit increase	Affymetrix [10900000] (imputed)	N
684	chr11	13033154	13033155	rs1141090	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	11p15.3	RASSF10	rs1141090-C	0.57405	4E-7		0.434	[0.27-0.6] unit increase	Illumina [9955952] (imputed)	N
684	chr11	13090941	13090942	rs2727405	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.3	RASSF10	rs2727405-A	0.323	8E-6	(Bike energy expenditure )	0.03	[NR] kcal/min increase	Illumina [899892]	N
685	chr11	13111483	13111484	rs2727365	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	11p15.3	Intergenic	rs2727365-G	0.32	2E-13		1.18	[1.13-1.23]	Illumina [up to 7441713] (imputed)	N
685	chr11	13124523	13124524	rs3849154	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	11p15.3	NR	rs3849154-T	0.3237	2E-28		1.15	[1.12-1.17]	Affymetrix, Illumina [7072771] (imputed)	N
685	chr11	13129162	13129163	rs117020818	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	11p15.3	CTC-497E21.5	rs117020818-?	0.046	7E-7	(S-DCT concentration)			Illumina [7537437] (imputed)	N
685	chr11	13158009	13158010	rs34660913	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	11p15.3	intergenic	rs34660913-T	0.0931	3E-6		0.6319	[0.37-0.9] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
685	chr11	13158009	13158010	rs34660913	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	11p15.3	intergenic	rs34660913-T	0.0922	5E-6	(Ordinal)	0.6007	[0.34-0.86] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
685	chr11	13162364	13162365	rs11022678	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	11p15.3	NR	rs11022678-A	0.15	4E-8			[NR]	Affymetrix [9886854] (imputed)	N
685	chr11	13162364	13162365	rs11022678	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	11p15.3	NR	rs11022678-A	0.15	3E-6		0.9	[0.87-0.94]	Affymetrix [9886854] (imputed)	N
685	chr11	13170784	13170785	rs7483689	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	11p15.3	NR	rs7483689-T	0.46	3E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
685	chr11	13170784	13170785	rs7483689	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	11p15.3	NR	rs7483689-T	0.46	7E-9			[NR]	Affymetrix [9886854] (imputed)	N
685	chr11	13170784	13170785	rs7483689	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	11p15.3	NR	rs7483689-T	0.46	3E-9		0.93	[0.91-0.95]	Affymetrix [9886854] (imputed)	N
685	chr11	13170784	13170785	rs7483689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.3		rs7483689-?	NR	3E-33				NR [~ 8900000] (imputed)	N
685	chr11	13171235	13171236	rs4757118	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	11p15.3	ARNTL	rs4757118-T	0.54	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
685	chr11	13228451	13228452	rs76954182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	998 European ancestry cases, 475,308 European ancestry controls, 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	11p15.3		rs76954182-C	NR	3E-8		4.9619	[3.21-6.71] unit increase	Affymetrix, Illumina [25843129] (imputed)	N
685	chr11	13230506	13230507	rs12288607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.3	RP11-413N13.1	rs12288607-T	NR	6E-9		0.0187021	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
685	chr11	13230923	13230924	rs10500775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.3	NR	rs10500775-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
685	chr11	13237017	13237017	rs141864388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	7,114 European ancestry cases, 475,964 European ancestry controls, 4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	11p15.3		rs141864388-CA	NR	4E-9		0.3502	[0.23-0.47] unit increase	Affymetrix, Illumina [25844651] (imputed)	N
685	chr11	13237017	13237017	rs141864388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	11p15.3		rs141864388-CA	0.041526981	4E-9		0.35021767	[0.23-0.47] unit increase	Illumina [13429824] (imputed)	N
686	chr11	13248729	13248730	rs35424804	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p15.3	ARNTL	rs35424804-T	0.5	1E-13		0.0088	[0.0064-0.0112] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
686	chr11	13250398	13250399	rs10832000	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (pre-diagnosis)	27 European ancestry cases, 1,180 European ancestry controls	NA	11p15.3	ARNTL	rs10832000-G	NR	2E-6		4.27	NR	Illumina [602644]	N
686	chr11	13257063	13257064	rs4757130	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	11p15.3		rs4757130-?	NR	7E-8		26.5832	[25.39-27.78]	NR [663102]	N
686	chr11	13267767	13267768	rs11022717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.3	NR	rs11022717-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
686	chr11	13268143	13268144	rs11022718	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.3	NR	rs11022718-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
686	chr11	13268143	13268144	rs11022718	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.3	NR	rs11022718-T	NR	2E-10		6.404	z score increase	Affymetrix [10847151] (imputed)	N
686	chr11	13268462	13268463	rs11022719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p15.3		rs11022719-?	NR	5E-8				NR [~ 8900000] (imputed)	N
686	chr11	13268462	13268463	rs11022719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.3	Intergenic	rs11022719-A	0.8536	2E-8	(MTAG)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
686	chr11	13269791	13269792	rs10832006	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	11p15.3	ARNTL	rs10832006-G	0.2539	9E-7		0.0086	[0.0053-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
686	chr11	13269945	13269946	rs34588274	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	11p15.3	ARNTL	rs34588274-?	NR	2E-17				Affymetrix [up to 9327396] (imputed)	N
686	chr11	13269945	13269946	rs34588274	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	11p15.3	ARNTL	rs34588274-C	NR	1E-13		0.016	unit decrease	Affymetrix [9327396] (imputed)	N
686	chr11	13269945	13269946	rs34588274	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	11p15.3	ARNTL	rs34588274-C	NR	1E-10		0.0087986	[0.0061-0.0115] unit decrease	Affymetrix [18485882] (imputed)	N
686	chr11	13269945	13269946	rs34588274	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11p15.3	ARNTL	rs34588274-T	0.43523	2E-16		8.25	z score decrease	NR [10847151] (imputed)	N
686	chr11	13270213	13270214	rs11605518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p15.3		rs11605518-?	NR	9E-9				NR [~ 8900000] (imputed)	N
686	chr11	13270716	13270717	rs986721	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p15.3	ARNTL	rs986721-A	0.27422	2E-8		0.03797408	[0.025-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
686	chr11	13274552	13274553	rs747601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p15.3		rs747601-T	NR	2E-8		0.0378	[0.024-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
686	chr11	13274552	13274553	rs747601	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p15.3	NA	rs747601-A	0.275	7E-11		0.0128	[0.0089-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
686	chr11	13274990	13274991	rs11603808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p15.3		rs11603808-?	NR	1E-12				NR [~ 8900000] (imputed)	N
686	chr11	13281326	13281327	rs4757136	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p15.3	NR	rs4757136-T	0.4166	7E-12		0.01730877	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
686	chr11	13281326	13281327	rs4757136	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p15.3	NR	rs4757136-A	0.584423675080894	4E-8		0.005124294	[0.0033-0.007] unit decrease	NR [NR]	N
686	chr11	13281326	13281327	rs4757136	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.3	NR	rs4757136-A	NR	3E-13		7.295	z score decrease	Affymetrix [10847151] (imputed)	N
686	chr11	13281326	13281327	rs4757136	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p15.3	ARNTL	rs4757136-A	0.428808	9E-13		7.15	z score decrease	NR [10847151] (imputed)	N
686	chr11	13281579	13281580	rs11022734	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.3	NR	rs11022734-A	0.5355	3E-8	(East Asian)	0.2341	[0.15-0.32] unit decrease	Illumina [6200000] (imputed)	N
686	chr11	13284055	13284056	rs4528309	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p15.3	NR	rs4528309-?	NR	3E-6		0.0083035	[0.0048-0.0118] unit increase	Affymetrix [805426] (imputed)	N
686	chr11	13288697	13288698	rs7942486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p15.3	NA	rs7942486-T	0.591	4E-18		0.0142	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
686	chr11	13288697	13288698	rs7942486	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p15.3	intergenic	rs7942486-T	0.55886	5E-14		7.545	z score decrease	Illumina [18485882] (imputed)	N
686	chr11	13291826	13291827	rs4757137	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11p15.3	RASSF10, ARNTL	rs4757137-G	0.69	3E-8		1.05	[1.03-1.06]	Illumina [5167567] (imputed)	N
686	chr11	13291930	13291931	rs4146385	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p15.3	NR	rs4146385-A	0.568099287756164	9E-14		0.009917627	[0.0073-0.0125] unit decrease	NR [NR]	N
686	chr11	13291930	13291931	rs4146385	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p15.3	NR	rs4146385-A	0.568099287756164	7E-14		0.012919377	[0.0095-0.0163] unit decrease	NR [NR]	N
686	chr11	13292260	13292261	rs12295636	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.3	NR	rs12295636-C	NR	1E-8		5.68	z score decrease	Affymetrix [10847151] (imputed)	N
686	chr11	13293181	13293182	rs11022738	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11p15.3	ARNTL	rs11022738-C	NR	8E-6		0.12794189	[0.073-0.183] unit decrease	Illumina [> 6200000] (imputed)	N
686	chr11	13293181	13293182	rs11022738	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.3	ARNTL	rs11022738-T	0.7176	7E-8		0.038	[0.024-0.052] unit increase	NR [8041861] (imputed)	N
686	chr11	13293904	13293905	rs900145	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.3	ARNTL	rs900145-T	0.4998	7E-7	(Japanese)	0.2952	[0.18-0.41] unit increase	Illumina [6200000] (imputed)	N
686	chr11	13293904	13293905	rs900145	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.3	ARNTL	rs900145-T	0.4998	3E-7	(Japanese)	0.2749	[0.17-0.38] unit increase	Illumina [6200000] (imputed)	N
686	chr11	13293904	13293905	rs900145	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.3	ARNTL	rs900145-?	NR	9E-14				Affymetrix, Illumina [18800000] (imputed)	N
686	chr11	13293904	13293905	rs900145	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.3	ARNTL	rs900145-?		7E-18				Affymetrix, Illumina [18800000] (imputed)	N
686	chr11	13293904	13293905	rs900145	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11p15.3	intergenic	rs900145-G	0.335530004616102	1E-7		0.2938215	[0.19-0.4] unit decrease	Illumina [247039]	N
686	chr11	13293904	13293905	rs900145	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	11p15.3	ARNTL	rs900145-G	0.336	2E-8		0.2	[0.14-0.26] unit decrease	Illumina [247039]	N
686	chr11	13293904	13293905	rs900145	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11p15.3	ARNTL	rs900145-?	NR	1E-6				Illumina [12039492]	N
686	chr11	13293904	13293905	rs900145	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	11p15.3	ARNTL	rs900145-C	0.30	2E-8		2.3	[1.52-3.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
686	chr11	13294267	13294268	rs900144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.3		rs900144-?	NR	3E-18				NR [~ 8900000] (imputed)	N
686	chr11	13295352	13295353	rs10832013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.3		rs10832013-T	NR	4E-11		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
686	chr11	13295352	13295353	rs10832013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p15.3		rs10832013-T	NR	3E-14		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
686	chr11	13295352	13295353	rs10832013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.3		rs10832013-?	NR	5E-9				NR [~ 8900000] (imputed)	N
686	chr11	13295352	13295353	rs10832013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.3		rs10832013-?	NR	1E-7				NR [~ 8900000] (imputed)	N
686	chr11	13300251	13300252	rs7928655	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.3	ARNTL	rs7928655-C	0.5005	8E-7	(Japanese)	0.2941	[0.18-0.41] unit decrease	Illumina [6200000] (imputed)	N
686	chr11	13300251	13300252	rs7928655	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.3	ARNTL	rs7928655-C	0.5005	4E-7	(Japanese)	0.2742	[0.17-0.38] unit decrease	Illumina [6200000] (imputed)	N
686	chr11	13300251	13300252	rs7928655	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.3	ARNTL	rs7928655-C		2E-8		0.143	unit decrease	Affymetrix [at least 2696785] (imputed)	N
686	chr11	13301334	13301335	rs4603287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p15.3		rs4603287-G	NR	1E-13		0.0157	[0.012-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
686	chr11	13301874	13301875	rs72867447	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	11p15.3		rs72867447-G	0.57	8E-8		0.011	mmol/L increase	NR [NR] (imputed)	N
686	chr11	13301874	13301875	rs72867447	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	11p15.3		rs72867447-G	0.57	1E-18		0.016	nmol/L decrease	NR [NR] (imputed)	N
686	chr11	13301874	13301875	rs72867447	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p15.3		rs72867447-G	0.57	1E-12				NR [NR] (imputed)	N
686	chr11	13301874	13301875	rs72867447	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p15.3		rs72867447-G	0.57	5E-14		0.011	% increase	NR [NR] (imputed)	N
686	chr11	13303070	13303071	rs3993105	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	11p15.3	ARNTL	rs3993105-T	0.675	5E-8		1.048	[1.031-1.066]	Affymetrix [9149595] (imputed)	N
686	chr11	13303084	13303085	rs7926712	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p15.3	ARNTL	rs7926712-?	NR	3E-9		0.0306179	[0.02-0.041] unit increase	Illumina [4804024] (imputed)	N
686	chr11	13303084	13303085	rs7926712	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11p15.3	ARNTL	rs7926712-A	0.3101	9E-9		0.0351	[0.023-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
686	chr11	13307621	13307622	rs11022752	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	11p15.3	ARNTL	rs11022752-A	0.730907	1E-9		0.01535	[0.01-0.02] unit decrease	Affymetrix [19400838] (imputed)	N
686	chr11	13310262	13310263	rs4353253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.3		rs4353253-?	NR	6E-19				NR [~ 8900000] (imputed)	N
686	chr11	13314102	13314102	rs60521023	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	11p15.3		rs60521023-?	NR	1E-7		0.041	[0.025-0.057] unit decrease	Affymetrix [9906178] (imputed)	N
686	chr11	13314102	13314102	rs60521023	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	11p15.3		rs60521023-?	NR	8E-10		0.041	[0.027-0.055] unit increase	Affymetrix [9906178] (imputed)	N
686	chr11	13314102	13314102	rs60521023	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p15.3	ARNTL	rs60521023-D	0.2965	5E-10		1.0438432		Affymetrix [11880941] (imputed)	N
686	chr11	13315204	13315205	rs34796300	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11p15.3	NR	rs34796300-T	0.4254	3E-9		0.01137	[0.0076-0.0151] unit increase	NR [8968716] (imputed)	N
686	chr11	13315438	13315439	rs11022756	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p15.3	ARNTL, PTH	rs11022756-A	0.29	7E-20		0.05	[0.038-0.062] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
686	chr11	13318523	13318524	rs11605776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p15.3		rs11605776-?	NR	1E-30				NR [~ 8900000] (imputed)	N
686	chr11	13318586	13318587	rs10766075	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	11p15.3	ARNTL	rs10766075-C	NR	7E-9		0.0078847	[0.0052-0.0106] unit increase	Affymetrix [18485882] (imputed)	N
686	chr11	13319837	13319838	rs6486116	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	11p15.3		rs6486116-A	NR	6E-6		0.00559529	[0.0032-0.008] years increase	NR [7400000] (imputed)	N
686	chr11	13319837	13319838	rs6486116	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11p15.3		rs6486116-A	NR	5E-10		0.022249555	[0.015-0.029] years increase	NR [7400000] (imputed)	N
686	chr11	13319893	13319894	rs7949336	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p15.3	ARNTL	rs7949336-A	0.7414	9E-9		0.0111271	[0.0073-0.0149] unit decrease	Affymetrix [11880941] (imputed)	N
686	chr11	13320532	13320533	rs7938308	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p15.3	NR	rs7938308-C	NR	8E-15		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
686	chr11	13325694	13325695	rs4757142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p15.3		rs4757142-A	NR	8E-13		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
686	chr11	13325694	13325695	rs4757142	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	11p15.3	ARNTL	rs4757142-?	NR	2E-10		0.0161931	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
686	chr11	13325694	13325695	rs4757142	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p15.3	NR	rs4757142-G	0.39051	6E-9		0.0178616	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
686	chr11	13325694	13325695	rs4757142	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p15.3	ARNTL	rs4757142-A	0.403401	9E-9		5.76	z score decrease	NR [10847151] (imputed)	N
686	chr11	13328978	13328979	rs7396943	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.3	NR	rs7396943-C	NR	6E-12		6.881	z score increase	Affymetrix [10847151] (imputed)	N
686	chr11	13331225	13331226	rs4757144	23358160	Borglum AD	2013-01-29	Mol Psychiatry	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	11p15.3	ARNTL	rs4757144-G	0.418	5E-6		1.154		Illumina [541148]	N
686	chr11	13331323	13331324	rs4757145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p15.3	NR	rs4757145-A	0.383318	3E-15		0.015196	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
686	chr11	13331807	13331808	rs55769038	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	11p15.3	ARNTL	rs55769038-A	0.421998	8E-12		6.84	z score decrease	NR [10847151] (imputed)	N
686	chr11	13333850	13333851	rs10741616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs10741616-A	0.415287	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
686	chr11	13333850	13333851	rs10741616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs10741616-A	0.413901	2E-14				Affymetrix, Illumina [24558453] (imputed)	N
686	chr11	13333850	13333851	rs10741616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p15.3	NR	rs10741616-A	0.384534	3E-17		0.016252	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
686	chr11	13333850	13333851	rs10741616	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11p15.3	ARNTL	rs10741616-?	NR	2E-9		0.0150594	[0.01-0.02] unit increase	Affymetrix [25921788] (imputed)	N
686	chr11	13335925	13335926	rs11022762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.3		rs11022762-T	NR	1E-11		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
686	chr11	13335925	13335926	rs11022762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.3		rs11022762-T	NR	2E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
686	chr11	13335925	13335926	rs11022762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p15.3		rs11022762-T	NR	4E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
686	chr11	13335925	13335926	rs11022762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.3	ARNTL	rs11022762-T	0.383346	1E-15		0.018184219	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
686	chr11	13335925	13335926	rs11022762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.3	ARNTL	rs11022762-T	0.38337	4E-17		0.019121908	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
686	chr11	13335925	13335926	rs11022762	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	11p15.3	NR	rs11022762-T	NR	4E-12		0.01662	NR unit increase	NR [7259579]	N
686	chr11	13335925	13335926	rs11022762	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	11p15.3	ARNTL	rs11022762-C	NR	7E-11		0.0089157	[0.0062-0.0116] unit increase	Affymetrix [18485882] (imputed)	N
686	chr11	13340709	13340710	rs10766076	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.3	NR	rs10766076-T	0.7137	1E-9		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
686	chr11	13344644	13344645	rs12805304	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	11p15.3	NR	rs12805304-?	NR	9E-6				Illumina [7427422] (imputed)	N
686	chr11	13345592	13345593	rs9633835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.3	ARNTL	rs9633835-A	0.364689	2E-20		0.021288225	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
686	chr11	13345592	13345593	rs9633835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.3	NR	rs9633835-A	0.398048	2E-18				Affymetrix, Illumina [24332387] (imputed)	N
686	chr11	13345592	13345593	rs9633835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.3	NR	rs9633835-A	0.366114	5E-21		0.018192	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
686	chr11	13345592	13345593	rs9633835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.3		rs9633835-?	NR	7E-12				NR [~ 8900000] (imputed)	N
686	chr11	13345592	13345593	rs9633835	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.3	ARNTL	rs9633835-G	0.632	8E-6	(EA)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
686	chr11	13345592	13345593	rs9633835	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.3	ARNTL	rs9633835-G	0.631	6E-6		0.018	[0.01-0.0252] kg/m2 increase	Affymetrix, Illumina [2550021]	N
686	chr11	13346293	13346294	rs11824092	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p15.3	NA	rs11824092-T	0.3508	5E-18		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
686	chr11	13347748	13347748	rs5789783	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11p15.3	ARNTL	rs5789783-T	0.402641	8E-9		0.0399511	[0.026-0.054] unit decrease	Affymetrix [9463307] (imputed)	N
686	chr11	13349558	13349559	rs28711392	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p15.3	ARNTL	rs28711392-T	0.632865	2E-16		0.0117792	[0.009-0.0146] unit increase	Affymetrix [12370749]	N
686	chr11	13349558	13349559	rs28711392	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.3	NR	rs28711392-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
686	chr11	13350130	13350131	rs1982350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p15.3	NA	rs1982350-A	0.3556	2E-18		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
686	chr11	13355769	13355770	rs6486121	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p15.3	ARNTL	rs6486121-T	0.6199	1E-10		0.015	[0.01-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
686	chr11	13355769	13355770	rs6486121	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	11p15.3	ARNTL	rs6486121-T	0.631	4E-10		0.046	[0.032-0.060] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
686	chr11	13356029	13356030	rs7947951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11p15.3		rs7947951-G	NR	6E-20		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
686	chr11	13356029	13356030	rs7947951	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	11p15.3	ARNTL	rs7947951-A	0.30858201	6E-14		0.0170178	[0.013-0.021] unit decrease	Affymetrix [9463307] (imputed)	N
686	chr11	13356029	13356030	rs7947951	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	11p15.3	ARNTL	rs7947951-A	0.30858201	1E-7		0.273816	[0.17-0.38] unit decrease	Affymetrix [9463307] (imputed)	N
686	chr11	13357182	13357183	rs10832027	30921485	Bejaoui Y	2019-03-28	Exp Dermatol	Genome-wide association study of psoriasis in an Egyptian population.	Psoriasis	215 Egyptian ancestry cases, 416 Egyptian ancestry controls	321 Egyptian ancestry cases, 253 Egyptian ancestry controls	11p15.3	ARNTL	rs10832027-?	NR	7E-6		1.41	[1.19-1.67]	Illumina [312245]	N
686	chr11	13357182	13357183	rs10832027	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	11p15.3	ARNTL	rs10832027-G	0.33	4E-12		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
686	chr11	13357182	13357183	rs10832027	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	11p15.3	ARNTL	rs10832027-A	0.67	3E-8	(BMI-adjusted)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
686	chr11	13357182	13357183	rs10832027	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	11p15.3	ARNTL	rs10832027-?	NR	4E-12				NR [1800000]	N
686	chr11	13357182	13357183	rs10832027	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	11p15.3	ARNTL	rs10832027-A	NR	9E-9				NR [25015711] (imputed)	N
686	chr11	13359744	13359745	rs2896635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	11p15.3		rs2896635-T	0.31217	9E-11		0.0282815	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p15.3	ARNTL	rs2896635-A	NR	4E-15				Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p15.3	ARNTL	rs2896635-A	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p15.3	ARNTL	rs2896635-A	NR	5E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p15.3	ARNTL	rs2896635-A	NR	2E-14				Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p15.3	ARNTL	rs2896635-A	NR	7E-13		0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p15.3	ARNTL	rs2896635-A	NR	2E-8	(EA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11p15.3	ARNTL	rs2896635-A	NR	4E-10		0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p15.3	ARNTL	rs2896635-A	NR	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
686	chr11	13359744	13359745	rs2896635	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.3		rs2896635-T	0.322	3E-7	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
686	chr11	13359744	13359745	rs2896635	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.3	NR	rs2896635-T	NR	1E-9		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.3	NR	rs1037169-T	0.312911	1E-41		0.0117228	[0.0099-0.0135] unit increase	Affymetrix [16582909] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p15.3	NR	rs1037169-T	0.313024	1E-24		0.0129775	[0.01-0.016] unit increase	Affymetrix [16585854] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p15.3	NR	rs1037169-T	0.312793	4E-16		0.00989768	[0.0075-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.3	NR	rs1037169-T	0.312911	2E-44		0.0138535	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p15.3	NR	rs1037169-T	0.313024	5E-24		0.0152522	[0.012-0.018] unit increase	Affymetrix [16585866] (imputed)	N
686	chr11	13361004	13361005	rs1037169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p15.3	NR	rs1037169-T	0.312793	4E-20		0.0115299	[0.0089-0.0141] unit increase	Affymetrix [16582614] (imputed)	N
686	chr11	13361004	13361005	rs1037169	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.3	NR	rs1037169-T	NR	6E-9		5.819	z score increase	Affymetrix [10847151] (imputed)	N
686	chr11	13361523	13361524	rs6486122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p15.3		rs6486122-T	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
686	chr11	13361523	13361524	rs6486122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p15.3		rs6486122-T	NR	3E-29		0.0261	[0.022-0.031] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
686	chr11	13361523	13361524	rs6486122	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.3	ARNTL	rs6486122-C	0.310761	3E-20		0.019768	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
686	chr11	13361523	13361524	rs6486122	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11p15.3	ARNTL	rs6486122-?	NR	2E-16		0.023	[0.018-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
686	chr11	13361523	13361524	rs6486122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11p15.3	NR	rs6486122-T	0.689797	2E-9		0.0167011	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
686	chr11	13361523	13361524	rs6486122	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p15.3	NR	rs6486122-C	0.309301	3E-39		0.0285663	[0.024-0.033] unit decrease	NR [NR]	N
686	chr11	13361523	13361524	rs6486122	22990020	Huang J	2012-09-18	Blood	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	11p15.3	ARNTL	rs6486122-?	NR	2E-10		0.046	[NR] unit increase	Affymetrix, Illumina [2445683] (imputed)	N
686	chr11	13363278	13363279	rs77032081	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	11p15.3	NR	rs77032081-T	0.017	2E-8	(women)	0.704529	[0.46-0.95] unit increase	Affymetrix [up to 8900000] (imputed)	N
686	chr11	13363278	13363279	rs77032081	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	11p15.3	ARNTL	rs77032081-T	NR	7E-6		8.53	[3.35-21.76]	Illumina [NR]	N
686	chr11	13366721	13366722	rs12421530	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p15.3	NR	rs12421530-G	NR	8E-13		0.0175	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
686	chr11	13366721	13366722	rs12421530	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p15.3	NR	rs12421530-G	NR	1E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
686	chr11	13366721	13366722	rs12421530	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11p15.3	NR	rs12421530-G	NR	3E-18		0.0224	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
686	chr11	13366721	13366722	rs12421530	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p15.3	NR	rs12421530-G	NR	8E-18		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
687	chr11	13414029	13414030	rs538325438	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.3	NR	rs538325438-C	0.998583	6E-13		0.227119	[0.17-0.29] unit increase	Affymetrix [16668957] (imputed)	N
687	chr11	13422946	13422947	rs10500780	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	147 European ancestry women	NA	11p15.3	BTBD10	rs10500780-?	NR	5E-6		1.79		Illumina [636555]	N
687	chr11	13498640	13498641	rs10766084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11p15.3	NR	rs10766084-C	NR	1E-14		0.0219	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
687	chr11	13498640	13498641	rs10766084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11p15.3	NR	rs10766084-C	NR	4E-30		0.0325	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
688	chr11	13505548	13505549	rs11511848	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11p15.3	NR	rs11511848-T	0.6261	2E-33		0.002855	[0.0024-0.0033] unit increase	Affymetrix [NR] (imputed)	N
688	chr11	13508383	13508384	rs2004315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11p15.3		rs2004315-T	NR	2E-42		0.0315	[0.027-0.036] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
688	chr11	13514052	13514053	rs6256	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	147 European ancestry women	NA	11p15.3	PTH	rs6256-?	NR	1E-6		1.93		Illumina [636555]	N
688	chr11	13574633	13574634	rs10832063	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	147 European ancestry women	NA	11p15.3	intergenic	rs10832063-?	NR	5E-6		1.8		Illumina [636555]	N
688	chr11	13620171	13620172	rs9630182	19874204	Guo Y	2009-10-29	J Bone Miner Res	IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study.	Bone mineral density	983 European ancestry individuals	2,557 European ancestry individuals from 750 families	11p15.3	PTH	rs9630182-T	0.38	4E-7		0.11	[NR] s.d. increase	Affymetrix [342854]	N
689	chr11	13656085	13656086	rs7927727	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue adjusted for BMI	1,152 European ancestry males, 1,361 European ancestry females	NA	11p15.3	FAR1	rs7927727-A	0.37	2E-7	(women)	0.03	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
689	chr11	13656955	13656956	rs187558225	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11p15.3	NR	rs187558225-?	NR	6E-7		0.6547	[0.39-0.92] unit decrease	Illumina [at least 560000] (imputed)	N
689	chr11	13656955	13656956	rs187558225	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11p15.3	PTH, FAR1	rs187558225-?	NR	6E-7		1.923077	[1.47-2.51]	Illumina [13754664] (imputed)	N
689	chr11	13687834	13687835	rs75512006	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.3	NR	rs75512006-T	0.01568	3E-9	(TTN)	1.076	NR unit increase	Illumina [1671387] (imputed)	N
689	chr11	13687834	13687835	rs75512006	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.3	NR	rs75512006-T	0.01568	2E-9	(EIF4A2)	0.03695	NR unit increase	Illumina [1671387] (imputed)	N
689	chr11	13758791	13758792	rs78078856	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	11p15.3	FAR1, SPON1	rs78078856-?		7E-6	(Etanercept)	0.9	[NR] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
689	chr11	13758791	13758792	rs78078856	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	11p15.3	FAR1, SPON1	rs78078856-?		2E-8	(Etanercept)	0.91	[0.6-1.22] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
690	chr11	13802918	13802919	rs12275375	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	11p15.3	intergenic	rs12275375-?	NR	2E-6	(BM4D-weighted model)			Illumina [501584]	N
690	chr11	13886921	13886922	rs1827516	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs1827516-T	0.16	1E-7		0.0237	[0.015-0.033] unit decrease	NR [8806780] (imputed)	N
690	chr11	13886921	13886922	rs1827516	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs1827516-T	0.16	2E-9		0.0207	[0.014-0.027] unit increase	NR [6098063] (imputed)	N
691	chr11	13928676	13928677	rs11023007	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	11p15.2	FAR1, SPON1	rs11023007-T	NR	5E-6		0.02767	[NR] unit decrease	Illumina [1124301]	N
691	chr11	13935367	13935368	rs117643921	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	11p15.2	FAR1, LOC101928132	rs117643921-A	0.9893	6E-6		0.6819	[0.39-0.98] unit increase	NR [NR] (imputed)	N
691	chr11	13935367	13935368	rs117643921	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	11p15.2	FAR1, LOC101928132	rs117643921-A	0.9893	6E-6		0.6819	[0.39-0.98] unit increase	NR [NR] (imputed)	N
691	chr11	13940035	13940036	rs10832139	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	11p15.2	SPON1	rs10832139-G	0.41	2E-8	(AA)	214.0	[139.52-288.48] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
691	chr11	13944121	13944122	rs11023018	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.2	NR	rs11023018-?	NR	3E-14				Affymetrix [NR]	N
691	chr11	13955648	13955649	rs373514022	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs373514022-C	0.998234	5E-12		0.202756	[0.15-0.26] unit increase	Affymetrix [16668957] (imputed)	N
691	chr11	13975458	13975459	rs79756450	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	11p15.2	NR	rs79756450-C	0.03874	6E-7		0.3914	[0.24-0.54] unit increase	Illumina [10677593] (imputed)	N
691	chr11	13992158	13992159	rs1950039	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs1950039-T	0.39	1E-27		0.0368	[0.03-0.043] unit increase	NR [8806780] (imputed)	N
691	chr11	13992158	13992159	rs1950039	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs1950039-T	0.39	2E-16		0.0211	[0.016-0.026] unit increase	NR [6098063] (imputed)	N
691	chr11	13993753	13993754	rs12801550	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	11p15.2		rs12801550-C	NR	2E-6		1.6682	[1-2.33] unit increase	Illumina [NR] (imputed)	N
691	chr11	13996154	13996155	rs1819084	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11p15.2	SPON1	rs1819084-C	0.71	9E-6		6.25	[NR]	Affymetrix [up to 4467279] (imputed)	N
691	chr11	13996821	13996822	rs571618690	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs571618690-A	0.998605	2E-31		0.366496	[0.3-0.43] unit increase	Affymetrix [16668957] (imputed)	N
691	chr11	13997807	13997808	rs12575169	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.2	NR	rs12575169-?	NR	2E-6				Affymetrix [NR]	N
691	chr11	14000240	14000241	rs2697844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs2697844-A	NR	1E-13		0.0187	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
691	chr11	14012956	14012957	rs2618515	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs2618515-A	0.39	2E-35		0.0422	[0.036-0.049] unit decrease	NR [8806780] (imputed)	N
691	chr11	14012956	14012957	rs2618515	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs2618515-A	0.39	1E-22		0.0254	[0.02-0.03] unit decrease	NR [6098063] (imputed)	N
691	chr11	14021638	14021639	rs2618516	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		11p15.2	SPON1	rs2618516-T	0.36	6E-10	(connectivity pattern)	0.0018	[NR] unit increase	Illumina [428287]	N
692	chr11	14029853	14029854	rs1919309	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p15.2	RRAS2	rs1919309-T	0.491204	3E-9		0.0117374	[0.0079-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
692	chr11	14034027	14034028	rs113137180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs113137180-G	NR	2E-30		0.064	[0.053-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
692	chr11	14035579	14035580	rs7116230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	11p15.2		rs7116230-A	NR	2E-9		0.058	[0.039-0.077] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
692	chr11	14038620	14038621	rs1969539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.2		rs1969539-?	NR	1E-8				NR [~ 8900000] (imputed)	N
692	chr11	14038620	14038621	rs1969539	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11p15.2	SPON1	rs1969539-G	0.5	8E-34		0.25	unit decrease	Illumina [5270624] (imputed)	N
692	chr11	14052118	14052119	rs11023056	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.2	SPON1	rs11023056-G	0.5565625	7E-18	(SPON1, 4297_62_3)	0.1993009	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
692	chr11	14053331	14053332	rs2618521	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.2	SPON1	rs2618521-G	0.648125	2E-13	(SPON1, 5496_49_3)	0.17409344	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
692	chr11	14066485	14066486	rs10832169	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.2	SPON1	rs10832169-A	0.491	1E-55	(Spondin-1, SPON1.4297.62.3)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
692	chr11	14066485	14066486	rs10832169	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p15.2	SPON1	rs10832169-G	0.4994985	9E-19	(Spondin-1)	0.3607	[0.28-0.44] unit decrease	Affymetrix [509946]	N
692	chr11	14068570	14068571	rs11023063	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPON1	5,367 Icelandic ancestry individuals	NA	11p15.2		rs11023063-C	0.4518	1E-35		0.21999	[0.19-0.25] unit increase	Illumina [7506463] (imputed)	N
692	chr11	14068570	14068571	rs11023063	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPON1	5,362 Icelandic ancestry individuals	NA	11p15.2		rs11023063-C	0.4518	8E-25		0.177102	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
692	chr11	14072409	14072410	rs10832172	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Spondin-1 levels	21,758 European ancestry individuals	9,173 individuals	11p15.2		rs10832172-T	0.53	3E-126		0.2319	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
692	chr11	14075711	14075712	rs191379475	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs191379475-G	0.98893	2E-15		0.102767	[0.077-0.128] unit decrease	Affymetrix [16668957] (imputed)	N
692	chr11	14076320	14076321	rs76103016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs76103016-G	NR	1E-8		0.0466548	[0.031-0.063] unit increase	Affymetrix [321016] (imputed)	N
692	chr11	14083472	14083473	rs12363618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs12363618-T	NR	2E-10		0.0312	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
692	chr11	14085130	14085131	rs77149876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs77149876-C	NR	2E-40		0.1974	[0.17-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
692	chr11	14089430	14089431	rs2697825	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	11p15.2	SPON1	rs2697825-?	0.17	5E-8		0.31	[0.20-0.42] unit increase	Illumina [6379332] (imputed)	N
692	chr11	14098481	14098482	rs17556665	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	11p15.2	SPON1	rs17556665-?	NR	1E-6	(Tumor necrosis factor-a)			Affymetrix [2543887] (imputed)	N
692	chr11	14100538	14100539	rs561089663	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs561089663-G	0.998499	5E-43		0.409455	[0.35-0.47] unit increase	Affymetrix [16668957] (imputed)	N
692	chr11	14133431	14133432	rs117277599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs117277599-T	NR	4E-11		0.0499	[0.035-0.065] unit increase	Affymetrix [9000000] (imputed)	N
692	chr11	14152412	14152413	rs181631645	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11p15.2		rs181631645-?	NR	5E-20		0.0456341	[0.036-0.055] unit decrease	NR [6912294] (imputed)	N
693	chr11	14157567	14157568	rs76820037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs76820037-G	NR	2E-14		0.0544	[0.04-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
693	chr11	14167926	14167927	rs10832198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs10832198-T	NR	2E-9		0.0195637	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
693	chr11	14181173	14181174	rs10832218	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs10832218-C	0.19774	7E-32		0.034215	[0.029-0.04] unit decrease	Affymetrix [16668957] (imputed)	N
693	chr11	14202308	14202309	rs117865811	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11p15.2	intergenic	rs117865811-G	0.013	2E-27		0.35	[0.29-0.41] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
693	chr11	14217873	14217874	rs11603589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs11603589-A	NR	1E-17		0.0450875	[0.035-0.055] unit increase	Affymetrix [321016] (imputed)	N
693	chr11	14224345	14224346	rs11023139	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		11p15.2	RRAS2, PSMA1, SPON1	rs11023139-?	0.05	7E-11		0.31	unit decrease	Illumina [NR] (imputed)	N
693	chr11	14225439	14225440	rs4757242	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Spondin-1 levels	21,758 European ancestry individuals	9,173 individuals	11p15.2		rs4757242-A	0.2	1E-12		0.0879	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
693	chr11	14244840	14244841	rs12364720	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs12364720-T	0.05	5E-13		0.0535	[0.039-0.068] unit decrease	NR [8806780] (imputed)	N
693	chr11	14244840	14244841	rs12364720	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs12364720-T	0.05	8E-10		0.0346	[0.024-0.046] unit increase	NR [6098063] (imputed)	N
693	chr11	14248226	14248227	rs11605163	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	SPON1	rs11605163-A	NR	7E-12		0.0377487	[0.027-0.049] unit increase	Affymetrix [321788] (imputed)	N
693	chr11	14253350	14253351	rs7103919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs7103919-C	NR	3E-8		0.0179345	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
693	chr11	14255607	14255608	rs11023156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs11023156-G	NR	3E-18		0.0277	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
693	chr11	14256183	14256184	rs12291225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs12291225-A	NR	4E-8		0.017917	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
693	chr11	14256183	14256184	rs12291225	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	11p15.2	SPON1	rs12291225-A	0.25	7E-6		0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
693	chr11	14260717	14260718	rs61883843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.2	SPON1	rs61883843-C	NR	2E-9		0.0376784	[0.025-0.05] unit increase	Affymetrix [323123] (imputed)	N
693	chr11	14264224	14264225	rs11023160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs11023160-A	NR	2E-8		0.0173461	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
693	chr11	14264546	14264547	rs7946907	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs7946907-G	NR	1E-10		0.0182558	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
693	chr11	14265612	14265613	rs7102710	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	11p15.2	NR	rs7102710-C	NR	2E-9	(EA)	0.1	NR unit increase	Affymetrix [723305]	N
693	chr11	14265612	14265613	rs7102710	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	11p15.2	SPON1	rs7102710-C	0.092	8E-7		0.038	[0.022-0.054] unit decrease	Illumina [at least 81396]	N
693	chr11	14268833	14268834	rs182674159	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p15.2	NR	rs182674159-?	NR	6E-6		0.0078002	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
693	chr11	14276998	14276999	rs2303975	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11p15.2	COPB1	rs2303975-A	0.142	8E-8	(Trans-ethnic initial)	0.0279	[0.018-0.038] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
693	chr11	14282876	14282877	rs72632971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs72632971-C	NR	1E-101		0.0993	[0.09-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
693	chr11	14283453	14283454	rs11023164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	SPON1	rs11023164-T	NR	2E-12		0.0316801	[0.023-0.04] unit decrease	Affymetrix [319769] (imputed)	N
693	chr11	14283453	14283454	rs11023164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	SPON1	rs11023164-T	NR	8E-12		0.0307117	[0.022-0.04] unit decrease	Affymetrix [319769] (imputed)	N
694	chr11	14288095	14288096	rs11369	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.2		rs11369-G	0.34	3E-19		8.99	z score increase	Affymetrix [9061022] (imputed)	N
694	chr11	14292376	14292377	rs4756787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs4756787-A	NR	9E-12		0.0253	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
694	chr11	14292986	14292987	rs74843651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.2		rs74843651-T	NR	5E-8		0.0468	[0.03-0.064] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
694	chr11	14292986	14292987	rs74843651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.2		rs74843651-T	0.051508	5E-8		0.0467664	[0.03-0.064] unit increase	Illumina [13476266] (imputed)	N
694	chr11	14292986	14292987	rs74843651	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	11p15.2	SPON1, RRAS2	rs74843651-T	0.052	2E-8		0.055	NR unit increase	Illumina [9591901] (imputed)	N
694	chr11	14296810	14296811	rs12364277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs12364277-G	NR	6E-13		0.0489	[0.036-0.062] unit increase	Affymetrix [9000000] (imputed)	N
694	chr11	14335875	14335876	rs117206369	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs117206369-T	0.998354	1E-48		0.467583	[0.41-0.53] unit increase	Affymetrix [16668957] (imputed)	N
694	chr11	14337575	14337575	rs143019979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	RRAS2	rs143019979-CA	NR	2E-15		0.0386603	[0.029-0.048] unit increase	Affymetrix [321788] (imputed)	N
694	chr11	14337575	14337575	rs143019979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RRAS2	rs143019979-CA	NR	1E-18		0.0413061	[0.032-0.05] unit increase	Affymetrix [321016] (imputed)	N
694	chr11	14342948	14342949	rs12291662	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p15.2	SPON1, RRAS2	rs12291662-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
694	chr11	14360434	14360435	rs2970332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11p15.2		rs2970332-G	0.232649	4E-8		0.0259086	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
694	chr11	14360434	14360435	rs2970332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11p15.2		rs2970332-G	0.232649	3E-8		0.0263453	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
694	chr11	14360434	14360435	rs2970332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	11p15.2		rs2970332-G	0.232649	4E-8		0.0265857	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
694	chr11	14360434	14360435	rs2970332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RRAS2	rs2970332-G	NR	8E-13		0.0239495	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
694	chr11	14360434	14360435	rs2970332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RRAS2	rs2970332-G	NR	1E-12		0.0238635	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
694	chr11	14360434	14360435	rs2970332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	RRAS2	rs2970332-G	NR	1E-8		0.0198979	[0.013-0.027] unit increase	Affymetrix [321788] (imputed)	N
694	chr11	14360434	14360435	rs2970332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RRAS2	rs2970332-G	NR	1E-9		0.020365	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
694	chr11	14360434	14360435	rs2970332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.2		rs2970332-?	NR	4E-12				NR [~ 8900000] (imputed)	N
694	chr11	14364950	14364951	rs2915400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11p15.2		rs2915400-T	0.232176	4E-8		0.0260688	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
694	chr11	14364950	14364951	rs2915400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11p15.2		rs2915400-T	0.232176	3E-8		0.0266784	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
694	chr11	14364950	14364951	rs2915400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs2915400-T	0.232176	4E-8		0.0259389	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
694	chr11	14364950	14364951	rs2915400	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.2	SPON1	rs2915400-?	NR	4E-6	(TAG 58:10)	0.18151669	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
694	chr11	14372060	14372061	rs11606692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.2		rs11606692-?	NR	1E-12				NR [~ 8900000] (imputed)	N
694	chr11	14385530	14385531	rs182244780	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11p15.2	intergenic	rs182244780-A	0.013	7E-33		0.39	[0.33-0.45] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
694	chr11	14386144	14386145	rs4517475	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p15.2	RRAS2	rs4517475-?		3E-9				NR [7428630] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.2		rs11023199-G	0.39	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p15.2		rs11023199-G	NR	3E-11		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.2	NR	rs11023199-G	0.3523	3E-11				NR [9056863] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RRAS2	rs11023199-G	NR	3E-12		0.0205864	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RRAS2	rs11023199-G	NR	1E-11		0.0200406	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
694	chr11	14394257	14394258	rs11023199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RRAS2	rs11023199-G	NR	3E-13		0.0215291	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
694	chr11	14394257	14394258	rs11023199	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.2	NR	rs11023199-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
694	chr11	14396484	14396485	rs7937890	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	11p15.2	RRAS2	rs7937890-?	NR	2E-6	(Males)		[NR]	Illumina [283437]	N
694	chr11	14402929	14402930	rs61884005	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p15.2		rs61884005-C	0.878194	1E-8		0.0354148	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
694	chr11	14402929	14402930	rs61884005	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11p15.2	RRAS2	rs61884005-C	NR	6E-9		1.0953	NR	Affymetrix, Illumina [8278136] (imputed)	N
694	chr11	14414138	14414139	rs567876843	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs567876843-G	0.995283	2E-180		0.541999	[0.5-0.58] unit increase	Affymetrix [16668957] (imputed)	N
694	chr11	14417127	14417128	rs10832250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	11p15.2		rs10832250-A	0.850371	4E-8		0.033394	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
695	chr11	14421217	14421218	rs61147618	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs61147618-T	0.07	3E-202		0.1987	[0.19-0.21] unit increase	NR [8806780] (imputed)	N
695	chr11	14421217	14421218	rs61147618	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	11p15.2		rs61147618-T	0.07	5E-31		0.0785	[0.065-0.092] unit increase	NR [8806780] (imputed)	N
695	chr11	14421217	14421218	rs61147618	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs61147618-T	0.07	1E-92		0.1018	[0.092-0.112] unit decrease	NR [6098063] (imputed)	N
695	chr11	14425285	14425286	rs10832252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.2		rs10832252-A	0.237205	2E-10		0.017399747	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
695	chr11	14425285	14425286	rs10832252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2		rs10832252-A	0.237201	1E-9		0.016688814	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
695	chr11	14427401	14427402	rs76613195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs76613195-A	NR	2E-11		0.0271749	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14427401	14427402	rs76613195	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs76613195-A	NR	6E-11		0.0265008	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14427401	14427402	rs76613195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.2	NR	rs76613195-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
695	chr11	14431708	14431709	rs11023212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs11023212-A	NR	5E-10		0.0185629	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
695	chr11	14431708	14431709	rs11023212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs11023212-A	NR	9E-10		0.0182667	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
695	chr11	14431708	14431709	rs11023212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs11023212-A	NR	7E-11		0.0194261	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
695	chr11	14434697	14434698	rs10832254	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs10832254-G	0.37	1E-320		0.132	[0.13-0.14] unit increase	NR [8806780] (imputed)	N
695	chr11	14434697	14434698	rs10832254	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	11p15.2		rs10832254-G	0.37	8E-20		0.0323	[0.025-0.039] unit increase	NR [8806780] (imputed)	N
695	chr11	14434697	14434698	rs10832254	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs10832254-G	0.37	1E-300		0.0	[0.0-0.0] increase	NR [6098063] (imputed)	N
695	chr11	14436818	14436819	rs61884028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs61884028-T	NR	3E-9		0.0365701	[0.024-0.049] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14436818	14436819	rs61884028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs61884028-T	NR	4E-8		0.0338268	[0.022-0.046] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14436818	14436819	rs61884028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs61884028-T	NR	2E-16		0.0526905	[0.04-0.065] unit increase	Affymetrix [321788] (imputed)	N
695	chr11	14436818	14436819	rs61884028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs61884028-T	NR	6E-27		0.0662661	[0.054-0.078] unit increase	Affymetrix [321016] (imputed)	N
695	chr11	14436945	14436946	rs10832255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs10832255-G	NR	7E-9		0.0188539	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14436945	14436946	rs10832255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs10832255-G	NR	7E-9		0.0189274	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
695	chr11	14436945	14436946	rs10832255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs10832255-G	NR	5E-8		0.0177758	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
695	chr11	14438414	14438418	rs10585869	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	255 European and unknown ancestry cases, 611 European and unknown ancestry controls	NA	11p15.2	PSMA1, COPB1	rs10585869-?	NR	1E-6		2.09	[1.55-2.81]	Illumina [> 2600000] (imputed)	N
695	chr11	14444542	14444543	rs61884030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	RP11-140L24.3	rs61884030-C	NR	9E-12		0.028964	[0.021-0.037] unit increase	Affymetrix [321788] (imputed)	N
695	chr11	14444542	14444543	rs61884030	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.2	COPB1	rs61884030-T	0.860509	1E-10		0.0177467	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
695	chr11	14449860	14449861	rs12287212	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	11p15.2	RNU7-49P, COPB1, RRAS2, PSMA1	rs12287212-A	0.35	2E-8	(Age 14)	0.94	[0.92-0.96] unit increase	Illumina [2461244] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.24669	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	1E-9		0.270434	[0.18-0.36] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	6E-9		0.259428	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-9		0.263448	[0.18-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	5E-9		0.263107	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	3E-8		0.249584	[0.16-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	4E-8		0.247073	[0.16-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997875	2E-9		0.260618	[0.18-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.253584	[0.17-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.254299	[0.17-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	1E-8		0.256497	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	1E-8		0.256852	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.251293	[0.16-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	1E-8		0.261273	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.252697	[0.16-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	3E-8		0.251876	[0.16-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11p15.2		rs192849769-T	0.997872	2E-8		0.254768	[0.17-0.34] unit increase	NR [11722792] (imputed)	N
695	chr11	14451991	14451992	rs192849769	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.2	NR	rs192849769-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
695	chr11	14456928	14456929	rs112170428	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels x season interaction	339,673 European ancestry individuals	NA	11p15.2		rs112170428-?	NR	3E-27		10.81	z score decrease	NR [6098063] (imputed)	N
695	chr11	14462800	14462801	rs148189116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.2	NR	rs148189116-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
695	chr11	14462800	14462801	rs148189116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.2		rs148189116-?	NR	1E-8				NR [~ 8900000] (imputed)	N
695	chr11	14464877	14464878	rs148514005	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs148514005-T	0.005501	1E-184		0.446821	[0.42-0.48] unit decrease	Affymetrix [16668957] (imputed)	N
695	chr11	14467794	14467795	rs77037130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs77037130-A	NR	2E-12		0.0714	[0.052-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
695	chr11	14469597	14469598	rs61884049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs61884049-T	NR	4E-35		0.0669	[0.056-0.077] unit increase	Affymetrix [9000000] (imputed)	N
695	chr11	14469597	14469598	rs61884049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p15.2	NR	rs61884049-T	NR	2E-9		0.0319	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
695	chr11	14471138	14471139	rs79732015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p15.2		rs79732015-G	0.090696	1E-43		0.0521195	[0.045-0.059] unit decrease	Illumina [13479295] (imputed)	N
695	chr11	14471138	14471139	rs79732015	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.2	RRAS2, COPB1	rs79732015-?	NR	1E-47		0.07705073	[0.067-0.087] unit decrease	Illumina [27896057] (imputed)	N
695	chr11	14478439	14478440	rs116918533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs116918533-C	NR	3E-11		0.0356	[0.025-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
695	chr11	14491884	14491885	rs7113429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs7113429-C	NR	2E-12		0.0488	[0.035-0.062] unit increase	Affymetrix [9000000] (imputed)	N
695	chr11	14495048	14495049	rs55665837	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11p15.2	intergenic	rs55665837-T	0.373	8E-31		0.08	[0.06-0.1] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
695	chr11	14498935	14498935	rs769117329	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p15.2	NR	rs769117329-CA	0.404225	2E-8		0.0114474	[0.0075-0.0154] unit decrease	Affymetrix [15000001]	N
695	chr11	14504462	14504463	rs7121538	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	11p15.2	COPB1	rs7121538-C	NR	2E-8		0.026	[0.016-0.036] unit increase	Affymetrix [at least 370268] (imputed)	N
695	chr11	14505961	14505962	rs2597193	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11p15.2		rs2597193-?	NR	4E-142		0.0597824	[0.055-0.064] unit increase	NR [6912294] (imputed)	N
695	chr11	14512558	14512559	rs571484036	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs571484036-A	0.998325	4E-16		0.217176	[0.16-0.27] unit decrease	Affymetrix [16668957] (imputed)	N
695	chr11	14517458	14517459	rs117688972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs117688972-C	NR	3E-19		0.0646	[0.05-0.079] unit increase	Affymetrix [9000000] (imputed)	N
695	chr11	14518418	14518419	rs117316450	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.2	NR	rs117316450-G	0.0188	2E-13		0.1308	[0.096-0.166] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
695	chr11	14518418	14518419	rs117316450	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.2	NR	rs117316450-G	0.0183	9E-15		0.1328	[0.099-0.166] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
695	chr11	14528011	14528011	rs565847585	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PSMA1	rs565847585-TA	NR	4E-11		0.0831578	[0.059-0.108] unit increase	Affymetrix [321016] (imputed)	N
695	chr11	14547588	14547589	rs138234998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.2		rs138234998-T	NR	1E-43		0.0532	[0.046-0.061] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
696	chr11	14556167	14556168	rs117104524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	PSMA1	rs117104524-A	NR	4E-8		0.0532819	[0.034-0.072] unit increase	Affymetrix [321788] (imputed)	N
696	chr11	14556167	14556168	rs117104524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PSMA1	rs117104524-A	NR	1E-13		0.069325	[0.051-0.088] unit increase	Affymetrix [321016] (imputed)	N
696	chr11	14561944	14561945	rs79634051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PSMA1	rs79634051-C	NR	8E-11		0.0550067	[0.038-0.072] unit decrease	Affymetrix [319769] (imputed)	N
696	chr11	14561944	14561945	rs79634051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	PSMA1	rs79634051-C	NR	6E-11		0.055423	[0.039-0.072] unit decrease	Affymetrix [319769] (imputed)	N
696	chr11	14561944	14561945	rs79634051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs79634051-C	NR	2E-15		0.059	[0.044-0.074] unit increase	Affymetrix [9000000] (imputed)	N
696	chr11	14561944	14561945	rs79634051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p15.2	NR	rs79634051-C	NR	5E-10		0.0453	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
696	chr11	14561944	14561945	rs79634051	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.2	PSMA1	rs79634051-G	0.97188	1E-12		0.0425386	[0.031-0.054] unit increase	Affymetrix [NR] (imputed)	N
696	chr11	14561944	14561945	rs79634051	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p15.2	PSMA1	rs79634051-G	0.971824	1E-11		0.0390728	[0.028-0.05] unit decrease	Affymetrix [NR] (imputed)	N
696	chr11	14561944	14561945	rs79634051	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11p15.2	PSMA1	rs79634051-?	NR	1E-11		0.0529	[0.039-0.067] unit decrease	Affymetrix [5701386] (imputed)	N
696	chr11	14561944	14561945	rs79634051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p15.2	NR	rs79634051-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
696	chr11	14567537	14567538	rs12417557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs12417557-T	NR	6E-38		0.0606	[0.051-0.07] unit increase	Affymetrix [9000000] (imputed)	N
696	chr11	14570261	14570262	rs117129545	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p15.2	NR	rs117129545-?	NR	9E-6		0.0077156	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
696	chr11	14573551	14573552	rs16930278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs16930278-A	NR	2E-14		0.035	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
696	chr11	14603991	14603992	rs10160597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PSMA1	rs10160597-A	NR	8E-9		0.0171602	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
696	chr11	14603991	14603992	rs10160597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	PSMA1	rs10160597-A	NR	8E-9		0.017179	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
696	chr11	14612562	14612563	rs577185477	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs577185477-C	0.01469	2E-342		0.379366	[0.36-0.4] unit decrease	Affymetrix [16668957] (imputed)	N
696	chr11	14632506	14632507	rs138600084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs138600084-T	NR	2E-19		0.0907	[0.071-0.11] unit increase	Affymetrix [9000000] (imputed)	N
696	chr11	14634777	14634778	rs2030553	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PSMA1	rs2030553-?	NR	1E-8		0.972187	[NR] unit decrease	Affymetrix [NR] (imputed)	N
696	chr11	14636389	14636390	rs554808052	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs554808052-C	0.998315	5E-40		0.348989	[0.3-0.4] unit increase	Affymetrix [16668957] (imputed)	N
696	chr11	14639256	14639257	rs12787709	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	PSMA1	rs12787709-G		1E-7		0.216	unit decrease	Affymetrix [at least 2696785] (imputed)	N
696	chr11	14639256	14639257	rs12787709	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	PSMA1	rs12787709-G		3E-8		0.138	unit decrease	Affymetrix [at least 2696785] (imputed)	N
696	chr11	14643844	14643845	rs142634845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PSMA1	rs142634845-A	NR	2E-11		0.0788008	[0.056-0.102] unit increase	Affymetrix [321016] (imputed)	N
696	chr11	14662721	14662722	rs2007361	33662382	Rogne T	2021-03-01	J Invest Dermatol	Genome-Wide Association Study Identifies LINC01184/SLC12A2 As Risk Locus for Skin and Soft Tissue Infections.	Skin and soft tissue infections	6,107 European ancestry cases and 399,239 European ancestry controls	1,657 European ancestry cases and 67,522 European ancestry controls	11p15.2	PSMA1	rs2007361-G	0.342	5E-8		0.91	[0.88-0.94]	Affymetrix, Illumina [9211777] (imputed)	N
696	chr11	14666363	14666364	rs146930117	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11p15.2		rs146930117-?	NR	5E-21		0.154185	[0.12-0.19] unit increase	NR [9800000] (imputed)	N
696	chr11	14669495	14669496	rs10832289	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs10832289-T	0.410173	2E-266		0.068522	[0.065-0.072] unit decrease	Affymetrix [16668957] (imputed)	N
696	chr11	14670148	14670149	rs187837359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	11p15.2	NR	rs187837359-?	NR	7E-7		1.651	[0.84-2.46] unit decrease	Illumina [at least 560000] (imputed)	N
696	chr11	14679246	14679247	rs1879888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.2		rs1879888-?	NR	1E-9				NR [~ 8900000] (imputed)	N
697	chr11	14683682	14683683	rs146128209	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs146128209-G	0.07	2E-55		0.1009	[0.088-0.113] unit increase	NR [8806780] (imputed)	N
697	chr11	14683682	14683683	rs146128209	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs146128209-G	0.07	2E-52		0.0745	[0.065-0.084] unit decrease	NR [6098063] (imputed)	N
697	chr11	14690510	14690511	rs11600054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs11600054-A	NR	2E-9		0.0706	[0.048-0.094] unit increase	Affymetrix [9000000] (imputed)	N
697	chr11	14711688	14711689	rs118059895	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PDE3B	rs118059895-?	NR	7E-9		1.01149	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr11	14729855	14729856	rs117247884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.2		rs117247884-?	NR	1E-10				NR [~ 8900000] (imputed)	N
697	chr11	14731665	14731666	rs117720468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p15.2		rs117720468-C	NR	9E-12		0.0553	[0.039-0.071] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
697	chr11	14732361	14732362	rs117421906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs117421906-C	NR	6E-25		0.0839	[0.068-0.1] unit increase	Affymetrix [9000000] (imputed)	N
697	chr11	14763827	14763828	rs141521721	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.2	PDE3B	rs141521721-A	0.0236	3E-8		1.13	[1.08-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
697	chr11	14768891	14768892	rs187443664	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs187443664-T	0.98867	3E-16		0.106498	[0.081-0.132] unit decrease	Affymetrix [16668957] (imputed)	N
697	chr11	14774590	14774591	rs1007392	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	11p15.2	CYP2R1, PDE3B, CALCA, CALCP, OR7E41P	rs1007392-A	0.59	4E-8	(Age 6)	1.06	[1.04-1.08] unit increase	Illumina [2461244] (imputed)	N
697	chr11	14781620	14781621	rs1451678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PDE3B	rs1451678-G	NR	7E-10		0.0173729	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
697	chr11	14781645	14781646	rs61883647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PDE3B	rs61883647-A	NR	3E-8		0.0164695	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
697	chr11	14784109	14784110	rs11023332	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	11p15.2	PDE3B, CYP2R1, CALCA, CALCP, OR7E41P	rs11023332-C	0.42	2E-10	(Age 14)	0.94	[0.92-0.96] unit increase	Illumina [2461244] (imputed)	N
697	chr11	14784109	14784110	rs11023332	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	11p15.2	NR	rs11023332-G	NR	7E-6		0.019	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
697	chr11	14785869	14785870	rs188480917	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs188480917-G	0.010804	5E-275		0.343291	[0.32-0.36] unit decrease	Affymetrix [16668957] (imputed)	N
697	chr11	14791510	14791511	rs17409116	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs17409116-C	NR	9E-16		0.063	[0.048-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
697	chr11	14802480	14802481	rs539505257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.2		rs539505257-T	NR	6E-16		0.0516	[0.039-0.064] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
697	chr11	14804295	14804296	rs185693786	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	11p15.2	PDE3B	rs185693786-G	0.931	2E-6	(AA)	0.095	[0.056-0.134] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
697	chr11	14804295	14804296	rs185693786	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	11p15.2	PDE3B	rs185693786-G	0.93	3E-8	(AA, Women)	0.125	[0.08-0.17] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
697	chr11	14806673	14806674	rs118071012	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11p15.2		rs118071012-?	NR	2E-18		0.0508178	[0.039-0.062] unit increase	NR [6912294] (imputed)	N
698	chr11	14818257	14818258	rs534042887	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs534042887-G	0.996899	3E-82		0.391563	[0.35-0.43] unit increase	Affymetrix [16668957] (imputed)	N
698	chr11	14819827	14819828	rs61885960	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.2	PDE3B	rs61885960-T	0.945794	8E-13		0.0317776	[0.023-0.04] unit increase	Affymetrix [NR] (imputed)	N
698	chr11	14819827	14819828	rs61885960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.2		rs61885960-?	NR	7E-30				NR [~ 8900000] (imputed)	N
698	chr11	14822852	14822853	rs532836473	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs532836473-G	0.998425	5E-44		0.435785	[0.37-0.5] unit increase	Affymetrix [16668957] (imputed)	N
698	chr11	14852489	14852490	rs1037378	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	11p15.2	PDE3B	rs1037378-A	NR	2E-11		0.013443416	[0.0095-0.0174] unit decrease	Illumina [242289]	N
698	chr11	14852489	14852490	rs1037378	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	11p15.2	NR	rs1037378-A	0.54	6E-9		0.017	unit decrease	Illumina [242289]	N
698	chr11	14856107	14856108	rs1011649	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium F sp000434115 abundance in stool	5,959 Finnish ancestry individuals	NA	11p15.2		rs1011649-A	0.127141	5E-9		0.148941	[0.099-0.199] unit increase	Illumina [7980478] (imputed)	N
698	chr11	14862894	14862895	rs139983808	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	11p15.2	NR	rs139983808-?	NR	4E-6		1.5360374	[1.28-1.84]	Affymetrix, Illumina [~ 10400000] (imputed)	N
698	chr11	14863086	14863087	rs113255079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs113255079-T	NR	2E-13		0.0491	[0.036-0.062] unit increase	Affymetrix [9000000] (imputed)	N
698	chr11	14864213	14864214	rs10766194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PDE3B	rs10766194-A	NR	2E-10		0.0181309	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
698	chr11	14864213	14864214	rs10766194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p15.2	PDE3B	rs10766194-A	NR	4E-10		0.017717	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
698	chr11	14864213	14864214	rs10766194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p15.2	PDE3B	rs10766194-A	NR	4E-10		0.0183617	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
698	chr11	14864213	14864214	rs10766194	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels x season interaction	339,673 European ancestry individuals	NA	11p15.2		rs10766194-?	NR	1E-98		21.08	z score decrease	NR [6098063] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11p15.2		rs150090666-T	NR	5E-26		0.4066	[0.33-0.48] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p15.2		rs150090666-T	NR	6E-22		0.3628	[0.29-0.44] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Waist-to-hip ratio adjusted for BMI	458,349 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	2E-14		0.2496	[0.19-0.31] unit decrease	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	3E-51		0.465058	[0.4-0.53] unit decrease	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	8E-11		0.204876	[0.14-0.27] unit increase	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	1E-14		0.241618	[0.18-0.3] unit decrease	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	2E-14		0.224961	[0.17-0.28] unit increase	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	6E-14		0.226025	[0.16-0.29] unit decrease	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	2E-15		0.197707	[0.15-0.25] unit increase	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	1E-55		0.468027	[0.41-0.53] unit increase	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	1E-11		0.208209	[0.14-0.27] unit decrease	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11p15.2		rs150090666-?	NR	8E-26		0.329813	[0.27-0.39] unit increase	NR [9800000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p15.2	NR	rs150090666-T	NR	4E-31		0.4315	[0.36-0.5] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p15.2	NR	rs150090666-T	NR	9E-25		0.3981	[0.32-0.47] unit increase	Affymetrix [9000000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11p15.2	NR	rs150090666-T	NR	5E-13		0.2696	[0.2-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p15.2	NR	rs150090666-T	NR	4E-12		0.2699	[0.19-0.35] unit increase	Affymetrix [9000000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.2	PDE3B	rs150090666-T	0.00100999999999996	6E-10		0.23651414	[0.16-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr11	14865398	14865399	rs150090666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.2	PDE3B	rs150090666-T	0.00100999999999996	5E-13		0.2760385	[0.2-0.35] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr11	14865398	14865399	rs150090666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.2	PDE3B	rs150090666-T	0.00100800000000001	3E-13		0.2770845	[0.2-0.35] unit increase	Affymetrix [93095623] (imputed)	N
698	chr11	14865398	14865399	rs150090666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2	PDE3B	rs150090666-T	0.00100900000000004	1E-9		0.23103738	[0.16-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr11	14865398	14865399	rs150090666	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p15.2	PDE3B	rs150090666-T	9.0E-4	1E-8		0.2779	[0.18-0.37] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p15.2	PDE3B	rs150090666-T	8.0E-4	3E-16		0.3987	[0.3-0.49] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
698	chr11	14865398	14865399	rs150090666	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11p15.2	NR	rs150090666-T	0.001	4E-13		0.2523	[0.18-0.32] unit decrease	NR [~ 27400000] (imputed)	N
698	chr11	14865513	14865514	rs374190636	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11p15.2		rs374190636-?	NR	3E-9		0.505662	[0.35-0.66] unit increase	NR [9800000] (imputed)	N
698	chr11	14873052	14873052	rs10666771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	PDE3B	rs10666771-TGG	NR	2E-11		0.0195997	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
698	chr11	14876717	14876718	rs116970203	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11p15.2		rs116970203-?	NR	1E-300		0.365538	[0.35-0.38] unit decrease	NR [6912294] (imputed)	N
698	chr11	14876717	14876718	rs116970203	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11p15.2		rs116970203-G	0.972844	1E-300		0.377	[0.37-0.39] unit decrease	NR [7250403] (imputed)	N
698	chr11	14876717	14876718	rs116970203	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	80,998 European ancestry individuals, 1,632 individuals	11p15.2		rs116970203-G	0.972844	1E-300	(EA)	0.376873	[0.36-0.39] unit increase	NR [8806780] (imputed)	N
698	chr11	14876717	14876718	rs116970203	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11p15.2	CYP2R1	rs116970203-A	0.025	2E-90		0.43	[0.39-0.47] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
698	chr11	14878441	14878442	rs10832310	31841498	Kampe A	2019-12-16	PLoS Genet	Genetic variation in GC and CYP2R1 affects 25-hydroxyvitamin D concentration and skeletal parameters: A genome-wide association study in 24-month-old Finnish children.	Serum 25-Hydroxyvitamin D levels	761 Finnish ancestry infants	NA	11p15.2	PDE3B, CYP2R1	rs10832310-G	0.373201	4E-11		7.52	NR unit decrease	Illumina [5072729] (imputed)	N
698	chr11	14881255	14881256	rs6486205	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	11p15.2	CYP2R1	rs6486205-?	NR	2E-6		0.4	[0.22-0.58] unit increase	Affymetrix [629686]	N
698	chr11	14882469	14882470	rs201501563	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs201501563-T	0.122197	9E-67		0.066474	[0.059-0.074] unit decrease	Affymetrix [16668957] (imputed)	N
698	chr11	14891140	14891141	rs61736639	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	11p15.2	PDE3B	rs61736639-C	0.00531042507039749	1E-7		0.21767406	unit increase	Illumina [265780]	N
698	chr11	14900930	14900931	rs117913124	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs117913124-A	0.027583	2E-775		0.354126	[0.34-0.37] unit decrease	Affymetrix [16668957] (imputed)	N
698	chr11	14900930	14900931	rs117913124	29545823	O'Brien KM	2018-03-01	Front Genet	Genome-Wide Association Study of Serum 25-Hydroxyvitamin D in US Women.	Serum 25-Hydroxyvitamin D levels	1,576 European ancestry individuals, 134 African American individuals, 81 Hispanic individuals, 38 individuals	1,307 European ancestry individuals, 722 European breast cancer cases, 693 European ancestry controls, 120 African-American individuals, 38 African American breast cancer cases, 46 African American controls, 59 Hispanic individuals, 27 Hispanic breast cancer cases, 27 Hispanic controls, 47 individuals, 23 breast cancer cases, 14 controls	11p15.2	CYP2R1	rs117913124-A	NR	1E-10		5.1	[3.6-6.7] ng/mL decrease	Illumina [386449]	N
698	chr11	14912416	14912417	rs7129781	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	11p15.2		rs7129781-C	0.071	4E-33		0.189	[0.16-0.22] unit increase	Affymetrix [812428]	N
698	chr11	14912416	14912417	rs7129781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs7129781-C	NR	1E-104		0.0974	[0.089-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr11	14912416	14912417	rs7129781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.2	NR	rs7129781-C	NR	2E-9		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
698	chr11	14912572	14912573	rs117576073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs117576073-T	NR	1E-38		0.1438	[0.12-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr11	14912572	14912573	rs117576073	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11p15.2		rs117576073-G	0.987265	3E-64		0.148	[0.13-0.17] unit decrease	NR [7250403] (imputed)	N
698	chr11	14912572	14912573	rs117576073	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs117576073-T	0.012385	1E-38		0.114573	[0.097-0.132] unit decrease	Affymetrix [16668957] (imputed)	N
698	chr11	14913574	14913575	rs12794714	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11p15.2		rs12794714-G	0.578197	1E-300		0.089	[0.085-0.093] unit decrease	NR [7250403] (imputed)	N
698	chr11	14913574	14913575	rs12794714	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	80,998 European ancestry individuals, 1,632 individuals	11p15.2		rs12794714-G	0.578197	1E-300	(EA)	0.0878964	[0.084-0.092] unit increase	NR [8806780] (imputed)	N
698	chr11	14913644	14913645	rs202122669	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	11p15.2		rs202122669-?	NR	6E-33		0.31296	[0.26-0.36] unit increase	NR [9800000] (imputed)	N
698	chr11	14914877	14914878	rs10741657	33382404	Sallinen RJ	2020-12-31	J Nutr	Genetic Risk Score for Serum 25-Hydroxyvitamin D Concentration Helps to Guide Personalized Vitamin D Supplementation in Healthy Finnish Adults.	Serum 25-Hydroxyvitamin D levels	3,399 Finnish ancestry individuals	NA	11p15.2	CYP2R1	rs10741657-A	0.421	3E-11		2.1	mmol/L increase	Illumina [~ 7700000] (imputed)	N
698	chr11	14914877	14914878	rs10741657	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels (dietary vitamin D intake interaction)	39,868 European ancestry individuals	2,113 European ancestry individuals	11p15.2	CYP2R1	rs10741657-A	NR	2E-38				Affymetrix, Illumina [at least 1200000] (imputed)	N
698	chr11	14914877	14914878	rs10741657	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	11p15.2	CYP2R1	rs10741657-A	NR	2E-46		0.031	[0.027-0.035] unit increase	Affymetrix, Illumina [up to 3600000] (imputed)	N
698	chr11	14914877	14914878	rs10741657	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	11p15.2	CYP2R1	rs10741657-A	NR	2E-6	(AA + Hispanic)		increase	Affymetrix, Illumina [at least 398246] (imputed)	N
698	chr11	14914877	14914878	rs10741657	20541252	Wang TJ	2010-06-09	Lancet	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	11p15.2	CYP2R1	rs10741657-?	0.40	3E-20				Affymetrix, Illumina [up to 2548976] (imputed)	N
698	chr11	14915309	14915310	rs2060793	20418485	Ahn J	2010-04-23	Hum Mol Genet	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	11p15.2	CYP2R1	rs2060793-A	0.41	3E-17		0.25	[0.15-0.35] unit increase	Affymetrix, Illumina [593253] (imputed)	N
698	chr11	14929959	14929960	rs11023379	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs11023379-T	NR	4E-181		0.0702	[0.065-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
698	chr11	14929959	14929960	rs11023379	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11p15.2		rs11023379-?	NR	5E-226		0.0652928	[0.061-0.069] unit decrease	NR [6912294] (imputed)	N
699	chr11	14950888	14950889	rs117776155	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	11p15.2	NR	rs117776155-T	0.0102	2E-6		0.9111	[0.54-1.29] unit decrease	Illumina [NR] (imputed)	N
699	chr11	14951215	14951216	rs150585703	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs150585703-G	0.996054	7E-125		0.481848	[0.44-0.52] unit increase	Affymetrix [16668957] (imputed)	N
699	chr11	14956390	14956391	rs59536295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs59536295-T	NR	1E-12		0.0378	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
699	chr11	14956390	14956391	rs59536295	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs59536295-T	0.05	3E-23		0.0726	[0.058-0.087] unit decrease	NR [8806780] (imputed)	N
699	chr11	14956390	14956391	rs59536295	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs59536295-T	0.05	4E-14		0.0422	[0.031-0.053] unit increase	NR [6098063] (imputed)	N
699	chr11	14977460	14977461	rs61878675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs61878675-T	NR	3E-25		0.0648	[0.053-0.077] unit increase	Affymetrix [9000000] (imputed)	N
699	chr11	14991510	14991511	rs145837941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	CALCB, CALCA	rs145837941-G	NR	5E-9		0.0600208	[0.04-0.08] unit increase	Affymetrix [321016] (imputed)	N
699	chr11	14998207	14998207	rs567258636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p15.2	CALCB	rs567258636-AGC	NR	2E-12		0.0481204	[0.035-0.062] unit increase	Affymetrix [321016] (imputed)	N
699	chr11	15014853	15014854	rs12293535	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11p15.2	CALCA	rs12293535-A	0.275110056197674	6E-10		0.0037064	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
699	chr11	15038423	15038424	rs55683806	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs55683806-A	0.06	1E-15		0.0583	[0.044-0.073] unit decrease	NR [8806780] (imputed)	N
699	chr11	15038423	15038424	rs55683806	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs55683806-A	0.06	2E-11		0.0374	[0.026-0.048] unit decrease	NR [6098063] (imputed)	N
699	chr11	15047401	15047402	rs78110496	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs78110496-G	NR	7E-43		0.0663	[0.057-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
699	chr11	15051181	15051182	rs72856836	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs72856836-T	0.06	9E-17		0.0572	[0.044-0.071] unit decrease	NR [8806780] (imputed)	N
699	chr11	15051181	15051182	rs72856836	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs72856836-T	0.06	6E-12		0.036	[0.026-0.046] unit increase	NR [6098063] (imputed)	N
699	chr11	15053788	15053789	rs6486216	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	11p15.2		rs6486216-T	0.276	1E-8		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
699	chr11	15059741	15059742	rs77486197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs77486197-T	NR	5E-15		0.05	[0.037-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
700	chr11	15103476	15103477	rs1945615	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	11p15.2	CALCB	rs1945615-A	0.302	4E-7		1.18	[1.11-1.26]	Illumina [32463443] (imputed)	N
700	chr11	15118974	15118975	rs117300835	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11p15.2	intergenic	rs117300835-A	0.015	3E-32		0.36	[0.3-0.42] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
700	chr11	15128345	15128346	rs11023435	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	11p15.2	intergenic	rs11023435-?	NR	4E-8				Affymetrix [905761]	N
700	chr11	15132049	15132050	rs34382242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs34382242-A	NR	7E-13		0.0431	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
700	chr11	15133197	15133198	rs11826529	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11p15.2		rs11826529-C	0.07	2E-37		0.0815	[0.069-0.094] unit decrease	NR [8806780] (imputed)	N
700	chr11	15133197	15133198	rs11826529	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11p15.2		rs11826529-C	0.07	9E-20		0.0441	[0.035-0.054] unit increase	NR [6098063] (imputed)	N
700	chr11	15192048	15192049	rs1627020	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (maternal effect)	1,743 Norwegian ancestry mothers	NA	11p15.2	NR	rs1627020-A		8E-6				NR [525577]	N
700	chr11	15199911	15199912	rs199801018	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	11p15.2		rs199801018-?	NR	2E-9		0.118992	[0.081-0.157] unit increase	NR [9800000] (imputed)	N
701	chr11	15216555	15216556	rs11825533	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.2	NR	rs11825533-A	0.01916	2E-8	(CCDC58)	0.01283	NR unit decrease	Illumina [1671387] (imputed)	N
701	chr11	15216691	15216692	rs1108010	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Perceptual and visual search speed (trail making test A)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	11p15.2		rs1108010-T	0.32	4E-8		0.05877	[0.038-0.08] unit increase	NR [534934]	N
701	chr11	15243058	15243059	rs17507577	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	INSC	rs17507577-G	0.92637	8E-59		0.0572259	[0.05-0.064] unit decrease	NR [13737936] (imputed)	N
701	chr11	15243058	15243059	rs17507577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs17507577-?	NR	4E-61				NR [~ 8900000] (imputed)	N
701	chr11	15243058	15243059	rs17507577	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs17507577-?	NR	1E-59		0.06184	[0.054-0.07] unit decrease	Affymetrix [20259828] (imputed)	N
701	chr11	15243058	15243059	rs17507577	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	INSC	rs17507577-G	0.925309	7E-7	(men)	0.0423805	[0.023-0.061] unit decrease	NR [17166351] (imputed)	N
701	chr11	15243058	15243059	rs17507577	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	INSC	rs17507577-G	0.924741	1E-15		0.0462708	[0.034-0.059] unit decrease	NR [17166351] (imputed)	N
701	chr11	15243058	15243059	rs17507577	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	INSC	rs17507577-G	0.924244	3E-9	(women)	0.0472829	[0.03-0.064] unit decrease	NR [17166351] (imputed)	N
701	chr11	15247306	15247307	rs61748861	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	11p15.2		rs61748861-?	NR	3E-14		0.0921364	[0.067-0.117] unit increase	NR [9800000] (imputed)	N
701	chr11	15247306	15247307	rs61748861	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	INSC	rs61748861-C	0.99404	1E-16		0.101245	[0.077-0.125] unit decrease	NR [13737936] (imputed)	N
701	chr11	15247306	15247307	rs61748861	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs61748861-?	NR	3E-10		0.0796982	[0.053-0.107] unit decrease	Affymetrix [20259828] (imputed)	N
701	chr11	15261990	15261991	rs200582479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs200582479-G	NR	1E-21		0.3158	[0.25-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
701	chr11	15330723	15330723	rs5789877	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.2	NR	rs5789877-ACT	0.6881	2E-6	(EA)	0.0324	[0.019-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
702	chr11	15388708	15388709	rs4622244	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p15.2	NR	rs4622244-G	0.657	2E-6		0.00545754	[0.0032-0.0077] unit decrease	NR [9732723] (imputed)	N
702	chr11	15391501	15391502	rs117714657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs117714657-A	NR	8E-15		0.0421	[0.032-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr11	15438255	15438256	rs6486245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs6486245-?	NR	7E-23				NR [~ 8900000] (imputed)	N
702	chr11	15439352	15439353	rs4456244	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	INSC	rs4456244-T	0.559103	1E-19		0.0169569	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
702	chr11	15439352	15439353	rs4456244	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs4456244-?	NR	4E-23		0.0199532	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
702	chr11	15452641	15452642	rs4757319	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.2	NR	rs4757319-G	0.3857	3E-6	(EA)	0.0298	[0.017-0.042] unit increase	Illumina [~ 11800000] (imputed)	N
702	chr11	15457466	15457467	rs7114467	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	11p15.2	INSC	rs7114467-A	0.45957	9E-6		0.0713	[0.040-0.103] year decrease	Illumina [2310762] (imputed)	N
702	chr11	15465859	15465860	rs10734234	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	11p15.2	INSC	rs10734234-T	0.9	2E-7	(15-18 months)	0.15	[0.095-0.205] unit decrease	Illumina [2449665] (imputed)	N
703	chr11	15493562	15493563	rs72864980	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.2	NR	rs72864980-G	0.01916	8E-9	(TGM2)	1.386	NR unit increase	Illumina [1671387] (imputed)	N
703	chr11	15493562	15493563	rs72864980	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.2	NR	rs72864980-G	0.01916	2E-9	(NARS)	0.04558	NR unit increase	Illumina [1671387] (imputed)	N
703	chr11	15531007	15531008	rs77015885	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11p15.2	intergenic	rs77015885-A	0.0365	7E-6		1.14993	[1.09-1.21]	NR [9372253] (imputed)	N
704	chr11	15616288	15616289	rs142867513	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11p15.2		rs142867513-?	NR	5E-6		0.8660631	[0.5-1.24] unit increase	Illumina [9842460] (imputed)	N
704	chr11	15620585	15620586	rs17439299	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.2	INSC	rs17439299-G	0.044	6E-6	(Diet protein )	0.03	[NR] g/d increase	Illumina [899892]	N
704	chr11	15668825	15668826	rs1531903	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p15.2	SOX6	rs1531903-?	NR	5E-15		1.0874293	NR	Affymetrix [9154080] (imputed)	N
704	chr11	15668825	15668826	rs1531903	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	11p15.2	LOC102724957	rs1531903-C	0.18	5E-7		0.203	[0.12-0.28] unit increase	Illumina [6379332] (imputed)	N
704	chr11	15668825	15668826	rs1531903	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11p15.2	SOX6	rs1531903-C	0.548456	3E-20		0.0824	[0.065-0.1] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
704	chr11	15677912	15677913	rs75319234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs75319234-?	NR	5E-12				NR [~ 8900000] (imputed)	N
704	chr11	15685569	15685570	rs7943358	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	11p15.2	NR	rs7943358-?	NR	4E-6	(genus_Phascolarctobacterium)	0.7383945	[0.41-1.06] unit increase	Affymetrix [210924]	N
704	chr11	15687802	15687803	rs10832501	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p15.2	NR	rs10832501-G	0.541	2E-7		0.0114324	[0.0071-0.0157] unit increase	NR [9732723] (imputed)	N
704	chr11	15694461	15694462	rs7117858	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	11p15.2	SOX6	rs7117858-G	0.20	6E-10		0.09	[0.06-0.12] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
704	chr11	15700184	15700184	rs375131378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2	RP11-396O20.1	rs375131378-GAATAGA	0.825873	4E-9		0.017375214	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
704	chr11	15700617	15700618	rs2351061	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	11p15.2		rs2351061-A	0.252	4E-8	(EA)	5.49	NR z score decrease	Illumina [11532091] (imputed)	N
704	chr11	15710083	15710084	rs7108738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.2	RP11-396O20.1	rs7108738-G	0.173369	6E-10		0.01830892	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
704	chr11	15710083	15710084	rs7108738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs7108738-?	NR	2E-28				NR [~ 8900000] (imputed)	N
704	chr11	15710083	15710084	rs7108738	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	11p15.2	SOX6	rs7108738-?	NR	1E-15	(FNK)			Affymetrix, Illumina [5842825] (imputed)	N
704	chr11	15710083	15710084	rs7108738	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p15.2	SOX6	rs7108738-T	0.83	1E-32		0.08	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
704	chr11	15715366	15715366	rs71044068	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	11p15.2	SOX6	rs71044068-?	NR	1E-7				Affymetrix, Illumina [12061510] (imputed)	N
704	chr11	15715366	15715366	rs71044068	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	11p15.2	SOX6	rs71044068-?	NR	2E-7		0.08	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
705	chr11	15730649	15730650	rs4477405	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p15.2		rs4477405-G	0.571	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
705	chr11	15730649	15730650	rs4477405	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p15.2	NR	rs4477405-A	0.435	3E-9		0.00643531	[0.0043-0.0086] unit decrease	NR [9732723] (imputed)	N
705	chr11	15747746	15747747	rs373975231	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.2		rs373975231-T	0.03131	4E-8		0.5177	[0.33-0.7] unit decrease	Illumina [18238284] (imputed)	N
705	chr11	15749253	15749254	rs7943117	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	LOC102724957	rs7943117-A	0.894862	3E-17		0.0256288	[0.02-0.032] unit increase	NR [13737936] (imputed)	N
705	chr11	15765458	15765459	rs11023703	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs11023703-?	NR	3E-9		0.0182914	[0.012-0.025] unit increase	Affymetrix [20259828] (imputed)	N
705	chr11	15776628	15776629	rs116869672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs116869672-G	NR	5E-15		0.0626	[0.047-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
705	chr11	15811929	15811930	rs10832519	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	11p15.2	RP11-396O20.2	rs10832519-C	0.0308714	5E-8		0.25140372	[0.16-0.34] unit decrease	Affymetrix [7288503] (imputed)	N
705	chr11	15815038	15815039	rs11023719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs11023719-?	NR	7E-20				NR [~ 8900000] (imputed)	N
705	chr11	15815038	15815039	rs11023719	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs11023719-?	NR	2E-18		0.0527988	[0.041-0.065] unit decrease	Affymetrix [20259828] (imputed)	N
705	chr11	15821428	15821429	rs11023722	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	LOC102724957	rs11023722-A	0.969628	3E-17		0.0455291	[0.035-0.056] unit decrease	NR [13737936] (imputed)	N
705	chr11	15832566	15832567	rs1470144	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.2		rs1470144-T	0.28	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
705	chr11	15850303	15850304	rs61171454	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	LOC102724957	rs61171454-G	0.979033	3E-16		0.0523185	[0.04-0.065] unit increase	NR [13737936] (imputed)	N
705	chr11	15850303	15850304	rs61171454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs61171454-?	NR	2E-19				NR [~ 8900000] (imputed)	N
705	chr11	15850303	15850304	rs61171454	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs61171454-?	NR	1E-19		0.0626712	[0.049-0.077] unit increase	Affymetrix [20259828] (imputed)	N
706	chr11	15865286	15865287	rs11023737	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	11p15.2	SOX6	rs11023737-?	0.68	4E-6		1.2048193	[1.11-1.30]	Affymetrix, Illumina [2500000] (imputed)	N
706	chr11	15870600	15870601	rs727324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs727324-?	NR	2E-12				NR [~ 8900000] (imputed)	N
706	chr11	15879945	15879946	rs55842281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p15.2		rs55842281-A	0.35654	1E-8		0.0212698	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
706	chr11	15879945	15879946	rs55842281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.2		rs55842281-G	NR	4E-19		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
706	chr11	15879945	15879946	rs55842281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p15.2		rs55842281-?	NR	7E-10				NR [~ 8900000] (imputed)	N
706	chr11	15904258	15904259	rs11023759	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	SOX6	rs11023759-T	0.85922	3E-20		0.0249329	[0.02-0.03] unit increase	NR [13737936] (imputed)	N
706	chr11	15904258	15904259	rs11023759	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs11023759-?	NR	9E-17		0.023939	[0.018-0.03] unit increase	Affymetrix [20259828] (imputed)	N
706	chr11	15910938	15910939	rs11023764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p15.2		rs11023764-A	0.6418	5E-10		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
706	chr11	15910938	15910939	rs11023764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.2	Intergenic	rs11023764-A	0.6418	1E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
706	chr11	15914403	15914404	rs1440703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs1440703-?	NR	6E-17				NR [~ 8900000] (imputed)	N
706	chr11	15923561	15923562	rs722317	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs722317-?	NR	3E-9		0.0121021	[0.008-0.0162] unit increase	Affymetrix [20259828] (imputed)	N
706	chr11	15927543	15927544	rs2582300	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.2	LOC102724957, SOX6	rs2582300-?	NR	2E-10		0.020390226	[0.014-0.027] unit increase	Illumina [27896057] (imputed)	N
706	chr11	15941098	15941099	rs10458877	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	11p15.2	intergenic	rs10458877-?	NR	9E-7				Illumina [655023]	N
706	chr11	15947448	15947449	rs11023784	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs11023784-T	0.0292	2E-10	(European)	0.1246	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
706	chr11	15947448	15947449	rs11023784	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs11023784-T	0.0286	2E-10		0.1156	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
706	chr11	15952293	15952294	rs11023787	21104366	Tan L	2010-11-23	Sci China Life Sci	A genome-wide association analysis implicates SOX6 as a candidate gene for wrist bone mass.	Bone mineral density (wrist)	1,000 European ancestry individuals	1,628 Chinese ancestry individuals	11p15.2	SOX6	rs11023787-T	0.04	5E-6				Affymetrix [379319]	N
706	chr11	15961144	15961145	rs7951933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.2		rs7951933-?	NR	4E-8				NR [~ 8900000] (imputed)	N
706	chr11	15975178	15975178	rs112629408	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs112629408-?	NR	1E-12		0.043929	[0.031-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
706	chr11	15979426	15979427	rs117129959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.2		rs117129959-?	NR	1E-9				NR [~ 8900000] (imputed)	N
707	chr11	16007445	16007446	rs66830472	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p15.2	NA	rs66830472-G		8E-12		0.0126331	[0.009-0.0163] unit decrease	Illumina [13288253] (imputed)	N
707	chr11	16012113	16012114	rs10741688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.2		rs10741688-?	NR	5E-9				NR [~ 8900000] (imputed)	N
707	chr11	16018736	16018737	rs10832544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	11p15.2		rs10832544-G	NR	5E-8		0.0681	[0.044-0.092] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
707	chr11	16038552	16038553	rs60718933	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11p15.2	SOX6	rs60718933-?	NR	1E-12		0.03047	[0.022-0.039] unit increase novel	Illumina [6108953] (imputed)	N
707	chr11	16038552	16038553	rs60718933	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	11p15.2	SOX6	rs60718933-?	NR	7E-14		0.03211	[0.024-0.041] unit increase novel	Illumina [6108953] (imputed)	N
707	chr11	16040174	16040175	rs16932455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11p15.2	NR	rs16932455-A	0.5767	2E-13		0.030535	[0.022-0.039] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
707	chr11	16040174	16040175	rs16932455	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	11p15.2	SOX6	rs16932455-?	NR	2E-6				NR [~ 2000000]	N
707	chr11	16040472	16040473	rs16932458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11p15.2		rs16932458-T	0.421295	3E-15		0.0290456	[0.022-0.036] unit increase	Illumina [13476299] (imputed)	N
707	chr11	16041304	16041305	rs7941496	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	11p15.2	CTD-3096P4.1	rs7941496-G	0.5164	1E-9		1.0602	NR	Affymetrix, Illumina [NR] (imputed)	N
707	chr11	16086746	16086747	rs2953060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11p15.2		rs2953060-?	NR	2E-13				NR [~ 8900000] (imputed)	N
707	chr11	16103437	16103438	rs117188914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs117188914-?	NR	4E-14				NR [~ 8900000] (imputed)	N
708	chr11	16150064	16150065	rs111506224	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs111506224-?	NR	9E-13		0.0393014	[0.028-0.05] unit decrease	Affymetrix [20259828] (imputed)	N
708	chr11	16150064	16150065	rs111506224	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	SOX6	rs111506224-C	0.9645	6E-7	(men)	0.0765293	[0.049-0.104] unit decrease	NR [17166351] (imputed)	N
708	chr11	16150064	16150065	rs111506224	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	SOX6	rs111506224-C	0.964374	6E-9		0.0570955	[0.039-0.075] unit decrease	NR [17166351] (imputed)	N
708	chr11	16215540	16215541	rs1455115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.2		rs1455115-?	NR	6E-8				NR [~ 8900000] (imputed)	N
708	chr11	16215545	16215546	rs1455114	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	11p15.2	SOX6	rs1455114-?		3E-8		1.1111112	[1.08-1.15]	Affymetrix, Illumina [3493832] (imputed)	N
708	chr11	16216873	16216874	rs113150176	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	SOX6	rs113150176-T	0.96327	1E-9		0.0300402	[0.02-0.04] unit decrease	NR [13737936] (imputed)	N
708	chr11	16216873	16216874	rs113150176	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs113150176-?	NR	3E-13		0.039336	[0.029-0.05] unit decrease	Affymetrix [20259828] (imputed)	N
708	chr11	16222029	16222030	rs2054095	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11p15.2	CTD-3096P4.1	rs2054095-T	0.484232	7E-14				Affymetrix, Illumina [NR] (imputed)	N
708	chr11	16224877	16224877	rs34121257	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	11p15.2		rs34121257-GA	0.490642002	1E-8				Illumina [7417619] (imputed)	N
708	chr11	16232405	16232406	rs961002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p15.2		rs961002-C	NR	2E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
708	chr11	16245691	16245692	rs1837095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p15.2		rs1837095-A	NR	2E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
708	chr11	16245691	16245692	rs1837095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11p15.2		rs1837095-A	NR	1E-12		0.0135	[0.0098-0.0172] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
708	chr11	16245691	16245692	rs1837095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.2		rs1837095-?	NR	4E-12				NR [~ 8900000] (imputed)	N
708	chr11	16246699	16246700	rs11023881	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11p15.2	NR	rs11023881-T	0.611916	2E-11		0.00857457	[0.006-0.0112] unit increase	Affymetrix [16578495] (imputed)	N
708	chr11	16247474	16247475	rs2028162	25387707	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of antisaccade eye tracking error rate: a genome-wide association study.	Anti-saccade response	4,469 European ancestry twins and their parents	NA	11p15.2	SOX6	rs2028162-?	NR	6E-6		0.025	[0.013-0.037] unit decrease	Illumina [527829]	N
708	chr11	16247860	16247881	rs67805125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p15.2		rs67805125-G	NR	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.613294	1E-38		0.0102489	[0.0086-0.0119] unit increase	Affymetrix [16582909] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.613233	5E-22		0.0112317	[0.0087-0.0137] unit increase	Affymetrix [16585854] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.61338	7E-18		0.00954064	[0.0072-0.0119] unit increase	Affymetrix [16582621] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.613294	8E-32		0.010519	[0.0086-0.0124] unit increase	Affymetrix [16582965] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.613233	7E-15		0.01072	[0.0079-0.0136] unit increase	Affymetrix [16585866] (imputed)	N
708	chr11	16247860	16247860	rs778571122	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p15.2	NR	rs778571122-GTGTTTTTTTTGTTTTTGTTTT	0.61338	1E-17		0.0102592	[0.0078-0.0127] unit increase	Affymetrix [16582614] (imputed)	N
708	chr11	16248203	16248204	rs2351959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.2	SOX6	rs2351959-C	0.893811	1E-12		0.025582306	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr11	16248893	16248894	rs12800049	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs12800049-T	0.2639	1E-15	(European)	0.0561	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
708	chr11	16249509	16249510	rs10832570	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11p15.2	SOX6	rs10832570-A	0.61	6E-10		6.2	z-score increase	Affymetrix [4312306] (imputed)	N
708	chr11	16249509	16249510	rs10832570	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p15.2	NR	rs10832570-A	0.61208	2E-16		0.0251653	[0.019-0.031] unit increase	Affymetrix [16577313] (imputed)	N
708	chr11	16250182	16250183	rs1401454	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p15.2	SOX6	rs1401454-C	0.61	1E-10		6.43	z-score increase	Affymetrix [4314223] (imputed)	N
708	chr11	16250182	16250183	rs1401454	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.2	SOX6	rs1401454-T	0.46	5E-10	(DBP)	0.45	[0.25-0.65] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
708	chr11	16250182	16250183	rs1401454	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	11p15.2	SOX6	rs1401454-T	0.46	1E-6	(SBP)	0.55	[0.24-0.86] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
708	chr11	16251250	16251251	rs2030291	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	11p15.2	SOX6	rs2030291-?	NR	2E-8		0.0014	[0.00081-0.00199] unit decrease	Affymetrix [21347608] (imputed)	N
708	chr11	16251250	16251251	rs2030291	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	11p15.2	SOX6	rs2030291-?	NR	1E-9		0.0025	[0.0017-0.0033] unit decrease	Affymetrix [21347608] (imputed)	N
708	chr11	16251250	16251251	rs2030291	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11p15.2	SOX6	rs2030291-A	0.611458	2E-10		0.00251101	[0.0017-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
708	chr11	16251250	16251251	rs2030291	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p15.2	NR	rs2030291-A	0.612587	8E-10		0.0129979	[0.0088-0.0171] unit increase	NR [NR]	N
708	chr11	16252182	16252183	rs16932777	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs16932777-C	0.7426	5E-16		0.0525	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
709	chr11	16252981	16252982	rs7927191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs7927191-?	NR	5E-27				NR [~ 8900000] (imputed)	N
709	chr11	16256716	16256717	rs10766309	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	SOX6	rs10766309-A	0.21	3E-16	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16259404	16259405	rs1949481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p15.2	SOX6	rs1949481-T	0.538446	6E-9		0.012931648	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16259404	16259405	rs1949481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p15.2	SOX6	rs1949481-T	0.538423	1E-9		0.0135505535	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16261223	16261224	rs10832571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p15.2		rs10832571-?	NR	1E-11				NR [~ 8900000] (imputed)	N
709	chr11	16263726	16263727	rs11023888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p15.2	SOX6	rs11023888-G	0.0821769999999999	9E-162		0.10966428	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16263726	16263727	rs11023888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p15.2	NR	rs11023888-T	0.918363	5E-210		0.106669	[0.1-0.113] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
709	chr11	16263726	16263727	rs11023888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.2	NR	rs11023888-G	0.0792664	5E-12				Affymetrix, Illumina [21126107] (imputed)	N
709	chr11	16265882	16265883	rs10766312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p15.2		rs10766312-T	NR	3E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
709	chr11	16268141	16268142	rs75128008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.2	NR	rs75128008-T	0.920629	1E-207				Affymetrix, Illumina [22063850] (imputed)	N
709	chr11	16271677	16271678	rs7118275	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	SOX6	rs7118275-T	0.79	6E-23	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16271831	16271834	rs766368749	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs766368749-?	NR	8E-22		0.024744	[0.02-0.03] unit increase	Affymetrix [20259828] (imputed)	N
709	chr11	16272780	16272781	rs145246577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11p15.2	SOX6	rs145246577-T	0.082672	4E-11		0.0278064	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr11	16273207	16273208	rs10832573	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p15.2	SOX6	rs10832573-C	0.203654	3E-10		0.061532356	[0.042-0.081] unit increase	Affymetrix [7288503] (imputed)	N
709	chr11	16273537	16273537	rs35498021	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs35498021-?	NR	9E-20		0.0234705	[0.018-0.029] unit increase	Affymetrix [20259828] (imputed)	N
709	chr11	16273537	16273537	rs35498021	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	SOX6	rs35498021-T	0.220348	2E-8		0.0241984	[0.016-0.032] unit increase	NR [17166351] (imputed)	N
709	chr11	16274294	16274295	rs4757388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p15.2		rs4757388-G	NR	8E-18		0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
709	chr11	16274895	16274895	rs112725769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	11p15.2		rs112725769-CA	NR	8E-9		0.0692	[0.046-0.093] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
709	chr11	16278285	16278286	rs9971543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p15.2		rs9971543-T	NR	4E-10		0.0607	[0.042-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
709	chr11	16278285	16278286	rs9971543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11p15.2		rs9971543-T	NR	2E-8		0.0562	[0.037-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
709	chr11	16278285	16278286	rs9971543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11p15.2		rs9971543-T	NR	3E-8		0.0563	[0.036-0.076] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
709	chr11	16278285	16278286	rs9971543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p15.2		rs9971543-T	NR	7E-15		0.0579	[0.043-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
709	chr11	16278288	16278289	rs9971406	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.2	NR	rs9971406-T	0.7711	6E-9	(East Asian)	0.2795	[0.19-0.37] unit decrease	Illumina [6200000] (imputed)	N
709	chr11	16283003	16283004	rs61881743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs61881743-?	NR	3E-25				NR [~ 8900000] (imputed)	N
709	chr11	16286182	16286183	rs10741694	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	11p15.2	SOX6	rs10741694-T	0.372823	2E-10		0.01474	[0.01-0.019] unit decrease	Affymetrix [19400838] (imputed)	N
709	chr11	16286182	16286183	rs10741694	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	11p15.2	SOX6	rs10741694-C	0.6255	9E-7		0.0077	[0.0046-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
709	chr11	16286183	16286184	rs11023895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p15.2		rs11023895-?	NR	3E-175				NR [~ 8900000] (imputed)	N
709	chr11	16290811	16290811	rs146669915	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.2	SOX6	rs146669915-T	0.8039	1E-9		0.2177	[0.15-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
709	chr11	16293679	16293680	rs977509	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11p15.2	NR	rs977509-C	NR	1E-8		1.0309278		NR [NR] (imputed)	N
709	chr11	16294167	16294168	rs7109206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p15.2		rs7109206-A	NR	4E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
709	chr11	16299586	16299587	rs10741695	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	SOX6	rs10741695-T	0.20481	3E-19		0.0207846	[0.016-0.025] unit increase	NR [13737936] (imputed)	N
709	chr11	16302938	16302939	rs4757391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.2	SOX6	rs4757391-C		9E-6	(EA)	0.332	unit increase	Affymetrix [at least 2696785] (imputed)	N
709	chr11	16302938	16302939	rs4757391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.2	SOX6	rs4757391-C		4E-7		0.339	unit increase	Affymetrix [at least 2696785] (imputed)	N
709	chr11	16302938	16302939	rs4757391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	SOX6	rs4757391-C		3E-14		0.357	unit increase	Affymetrix [at least 2696785] (imputed)	N
709	chr11	16302938	16302939	rs4757391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p15.2	SOX6	rs4757391-C		5E-6		0.198	unit increase	Affymetrix [at least 2696785] (imputed)	N
709	chr11	16302938	16302939	rs4757391	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	SOX6	rs4757391-C		7E-16		0.231	unit increase	Affymetrix [at least 2696785] (imputed)	N
709	chr11	16302938	16302939	rs4757391	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	11p15.2	SOX6	rs4757391-C	0.28	5E-9		0.88	[0.59-1.17] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
709	chr11	16302938	16302939	rs4757391	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	11p15.2	SOX6	rs4757391-C	0.28	3E-6				Affymetrix, Illumina [2485448] (imputed)	N
709	chr11	16302938	16302939	rs4757391	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	11p15.2	SOX6	rs4757391-C	0.28	5E-9		0.49	[0.31-0.67] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
709	chr11	16304088	16304089	rs10832586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.2		rs10832586-?	NR	2E-29				NR [~ 8900000] (imputed)	N
709	chr11	16307699	16307700	rs1156725	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.2	PLEKHA7	rs1156725-T	0.804	6E-10		0.447	[0.31-0.59] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
709	chr11	16307699	16307700	rs1156725	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p15.2	PLEKHA7	rs1156725-T	0.804	4E-11		0.292	[0.21-0.38] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
709	chr11	16308462	16308463	rs12799126	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.2	SOX6	rs12799126-T	0.2006	2E-13		0.3084	[0.23-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
709	chr11	16308462	16308463	rs12799126	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	SOX6	rs12799126-T	0.2	4E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16317778	16317779	rs61883178	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	11p15.2	SOX6	rs61883178-C	0.1696	2E-10		0.0208	[0.014-0.027] unit decrease	NR [NR]	N
709	chr11	16318517	16318518	rs893311	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11p15.2	SOX6	rs893311-T	0.20571	1E-8		0.056468226	[0.037-0.076] unit increase	Affymetrix [7288503] (imputed)	N
709	chr11	16318517	16318518	rs893311	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	SOX6	rs893311-T	0.2	4E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16324405	16324406	rs11023906	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.2	SOX6	rs11023906-A	0.2	7E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16324405	16324406	rs11023906	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11p15.2	SOX6	rs11023906-A	0.21	1E-9	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16334777	16334778	rs11023910	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11p15.2	SOX6	rs11023910-T	0.205274	1E-8		0.057553295	[0.038-0.077] unit increase	Affymetrix [7288503] (imputed)	N
709	chr11	16337826	16337827	rs7121869	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p15.2	SOX6	rs7121869-A	0.206893	4E-15		0.058296926	[0.044-0.073] unit increase	Affymetrix [7288503] (imputed)	N
709	chr11	16342214	16342215	rs2218001	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.2	SOX6	rs2218001-A	0.79	1E-27	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
709	chr11	16348060	16348061	rs7131442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.2		rs7131442-T	NR	9E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
709	chr11	16348060	16348061	rs7131442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p15.2		rs7131442-T	NR	3E-14		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
709	chr11	16348060	16348061	rs7131442	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11p15.2	NR	rs7131442-A	0.7661	1E-8	(East Asian)	0.3113	[0.2-0.42] unit decrease	Illumina [6200000] (imputed)	N
709	chr11	16348060	16348061	rs7131442	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	11p15.2	NR	rs7131442-A	0.7918	2E-10		0.0762	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
709	chr11	16352544	16352545	rs12801635	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs12801635-T	0.7938	1E-11		0.0476	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
709	chr11	16352544	16352545	rs12801635	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs12801635-T	0.7893	1E-11	(European)	0.0515	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
709	chr11	16354652	16354653	rs297343	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11p15.2	NR	rs297343-T	0.3604	7E-9		0.01107	[0.0073-0.0148] unit increase	NR [8968716] (imputed)	N
709	chr11	16354652	16354653	rs297343	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p15.2	SOX6	rs297343-T	0.364	7E-8		0.00948928	[0.006-0.0129] unit decrease	Affymetrix [11880941] (imputed)	N
709	chr11	16354652	16354653	rs297343	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11p15.2	NR	rs297343-G	0.637104222740963	9E-9		0.007536565	[0.005-0.0101] unit decrease	NR [NR]	N
709	chr11	16354652	16354653	rs297343	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p15.2	NR	rs297343-T	NR	6E-12		6.875	z score increase	Affymetrix [10847151] (imputed)	N
709	chr11	16355770	16355771	rs297346	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	11p15.2	SOX6	rs297346-A	0.3618	8E-14		0.017711889	[0.012-0.023] unit increase	NR [9417325] (imputed)	N
709	chr11	16355770	16355771	rs297346	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p15.2	SOX6	rs297346-A	NR	2E-8		0.009713	[0.0063-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
709	chr11	16355770	16355771	rs297346	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p15.2	NR	rs297346-G	0.637099190017094	7E-10		0.0058935108	[0.004-0.0078] unit decrease	NR [NR]	N
709	chr11	16355770	16355771	rs297346	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p15.2	NR	rs297346-G	0.637099190017094	2E-9		0.007130293	[0.0048-0.0094] unit decrease	NR [NR]	N
709	chr11	16355770	16355771	rs297346	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p15.2	NR	rs297346-G	0.637099190017094	1E-9		0.009287722	[0.0063-0.0123] unit decrease	NR [NR]	N
709	chr11	16355770	16355771	rs297346	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p15.2	NR	rs297346-G	0.637099190017094	2E-9		0.0059065786	[0.004-0.0078] unit decrease	NR [NR]	N
709	chr11	16355770	16355771	rs297346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p15.2		rs297346-?	NR	2E-11				NR [~ 8900000] (imputed)	N
709	chr11	16355770	16355771	rs297346	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p15.2	NR	rs297346-A	NR	2E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
709	chr11	16355770	16355771	rs297346	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p15.2	SOX6	rs297346-A	0.366117	7E-11		6.53	z score increase	NR [10847151] (imputed)	N
709	chr11	16355770	16355771	rs297346	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11p15.2	SOX6	rs297346-A	0.366117	5E-10		6.23	z score increase	NR [10847151] (imputed)	N
709	chr11	16355770	16355771	rs297346	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p15.2	SOX6	rs297346-A	0.36612	2E-8		5.641	z score increase	Illumina [18485882] (imputed)	N
709	chr11	16359554	16359555	rs117351529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.2		rs117351529-C	NR	8E-12		0.0289	[0.021-0.037] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
709	chr11	16359554	16359555	rs117351529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.2	SOX6	rs117351529-C	0.081114	2E-27		0.0392606	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16359566	16359567	rs17462448	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11p15.2	SOX6	rs17462448-A	NR	9E-41		0.0923673	[0.078-0.107] unit increase	Affymetrix [16832071] (imputed)	N
709	chr11	16359566	16359567	rs17462448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11p15.2	SOX6	rs17462448-A	0.0823	2E-49		0.09578785	[0.083-0.108] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr11	16359566	16359567	rs17462448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p15.2	SOX6	rs17462448-A	0.0823	3E-9		0.03818588	[0.026-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr11	16362020	16362021	rs117573112	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	11p15.2		rs117573112-C	0.007797	9E-13		0.19	[0.14-0.24] unit decrease	NR [11842647] (imputed)	N
709	chr11	16362020	16362021	rs117573112	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	11p15.2		rs117573112-C	0.006954	6E-19		0.36	[0.28-0.44] unit increase	NR [11842647] (imputed)	N
709	chr11	16362020	16362021	rs117573112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs117573112-?	NR	5E-35				NR [~ 8900000] (imputed)	N
709	chr11	16362088	16362089	rs17553733	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	11p15.2	SOX6	rs17553733-?	NR	2E-10			[NR]	NR [NR] (imputed)	N
709	chr11	16363657	16363658	rs11023922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.2	SOX6	rs11023922-T	0.082606	8E-41		0.054328438	[0.046-0.062] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16363657	16363658	rs11023922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.2	SOX6	rs11023922-T	0.082672	1E-40		0.054413904	[0.046-0.062] unit increase	Affymetrix [93095623] (imputed)	N
709	chr11	16365281	16365282	rs2014408	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.2	SOX6	rs2014408-?	NR	3E-23				Affymetrix, Illumina [18800000] (imputed)	N
709	chr11	16365281	16365282	rs2014408	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11p15.2	SOX6	rs2014408-?		5E-23				Affymetrix, Illumina [18800000] (imputed)	N
709	chr11	16365281	16365282	rs2014408	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	11p15.2	NR	rs2014408-C	0.7932	2E-8		0.0148	[0.0097-0.0199] unit increase	Illumina [NR] (imputed)	N
709	chr11	16368493	16368494	rs75491173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p15.2		rs75491173-?	NR	5E-11				NR [~ 8900000] (imputed)	N
709	chr11	16372430	16372431	rs7109376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11p15.2	NR	rs7109376-A	0.279	2E-13		0.0126368	[0.0093-0.016] unit increase	NR [9732723] (imputed)	N
709	chr11	16372430	16372431	rs7109376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	11p15.2	NR	rs7109376-A	0.279	1E-10		0.02805923	[0.02-0.037] unit increase	NR [~ 10000000] (imputed)	N
709	chr11	16372430	16372431	rs7109376	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p15.2	SOX6	rs7109376-A	0.2792	1E-14		1.068	NR	Affymetrix [9154080] (imputed)	N
709	chr11	16373082	16373083	rs2118362	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	11p15.2	SOX6	rs2118362-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
709	chr11	16373713	16373714	rs11023926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11p15.2		rs11023926-?	NR	4E-9				NR [~ 8900000] (imputed)	N
709	chr11	16376660	16376661	rs181977858	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs181977858-?	NR	9E-10		0.132455	[0.09-0.175] unit increase	Affymetrix [20259828] (imputed)	N
709	chr11	16377043	16377044	rs7951365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	11p15.2	NR	rs7951365-C	0.31	2E-11		0.017756414	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
709	chr11	16377043	16377044	rs7951365	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p15.2	NR	rs7951365-C	0.31	9E-16		0.019028	[0.014-0.024] unit increase	NR [9732723] (imputed)	N
709	chr11	16377355	16377356	rs34866095	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11p15.2		rs34866095-A	0.686	1E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
709	chr11	16380753	16380754	rs588470	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p15.2	NR	rs588470-?	NR	2E-6		0.0082902	[0.0049-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
709	chr11	16382320	16382321	rs7932056	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	11p15.2	SOX6	rs7932056-G		1E-9		0.969	[NR]	Affymetrix [up to 79000000] (imputed)	N
709	chr11	16382881	16382882	rs16932966	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	11p15.2	intergenic	rs16932966-?	NR	3E-10		0.0082946	[0.0057-0.0109] unit decrease	Affymetrix [NR] (imputed)	N
709	chr11	16382881	16382882	rs16932966	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	11p15.2	NR	rs16932966-A	0.273343	3E-7		5.11352	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
710	chr11	16384182	16384183	rs10832597	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11p15.2	NR	rs10832597-A	NR	8E-13		0.055	[0.04-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
710	chr11	16389593	16389594	rs297325	19714249	Liu YZ	2009-08-28	PLoS One	Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males.	Obesity and osteoporosis	499 European ancestry male individuals, 501 European ancestry female individuals	1,370 European ancestry male individuals and 1,985 European ancestry female individuals from 975 families	11p15.2	SOX6	rs297325-C	0.23	4E-7	(BMI-BMD, males)			Affymetrix [379319]	N
710	chr11	16403510	16403511	rs4756846	19714249	Liu YZ	2009-08-28	PLoS One	Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males.	Obesity and osteoporosis	499 European ancestry male individuals, 501 European ancestry female individuals	1,370 European ancestry male individuals and 1,985 European ancestry female individuals from 975 families	11p15.2	SOX6	rs4756846-C	0.12	5E-7	(BMI-BMD, males)			Affymetrix [379319]	N
710	chr11	16408575	16408576	rs1847315	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.2		rs1847315-A	0.41	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
710	chr11	16410498	16410499	rs72871339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11p15.2	SOX6	rs72871339-T	0.0249	2E-14		0.08910266	[0.066-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr11	16461312	16461313	rs12800228	32929176	Feng GJ	2020-09-14	J Hum Genet	Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.	Bone mineral density	8,508 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	215,234 European ancestry individuals	11p15.2	NR	rs12800228-T	0.71	2E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [12061510] (imputed)	N
710	chr11	16474016	16474017	rs1000565	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	11p15.2	SOX6	rs1000565-A	0.6017	2E-8		1.0174989	[NR]	Illumina [12493444] (imputed)	N
710	chr11	16481949	16481950	rs34156428	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11p15.2	SOX6	rs34156428-A	0.837	2E-8		0.048	[0.03-0.066] unit increase	Affymetrix [7947838] (imputed)	N
710	chr11	16483350	16483351	rs141413202	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	11p15.2	SOX6	rs141413202-T	0.0011	5E-49		23.6511	[20.5-26.8] mmHg increase	Affymetrix [NR] (imputed)	N
710	chr11	16509356	16509357	rs10832618	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs10832618-?	NR	1E-14		0.0153708	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
711	chr11	16516530	16516531	rs35885398	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p15.2	SOX6, C11orf58	rs35885398-?	NR	2E-9		0.0388858	[0.026-0.052] unit decrease	Illumina [4804024] (imputed)	N
711	chr11	16523490	16523491	rs186673610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.2	SOX6	rs186673610-T	0.024463	4E-33		0.0721615	[0.059-0.085] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16534414	16534415	rs12802656	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	11p15.2	NR	rs12802656-C	NR	3E-6		0.009588	[0.0056-0.0136] unit increase	Illumina [~ 540852]	N
711	chr11	16543862	16543863	rs7943712	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p15.2	SOX6	rs7943712-?	NR	2E-10		1.0665529	NR	Affymetrix [9154080] (imputed)	N
711	chr11	16559629	16559630	rs4287304	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	11p15.2	SOX6	rs4287304-C	NR	3E-9		0.1028	[NR] unit decrease	Illumina [11892802] (imputed)	N
711	chr11	16580957	16580958	rs574992951	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs574992951-C	0.991488	4E-9		0.086717	[0.058-0.116] unit increase	Affymetrix [16668957] (imputed)	N
711	chr11	16583187	16583188	rs11603453	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11p15.2		rs11603453-T	NR	6E-9		0.01891021	[0.013-0.025] years increase	NR [7400000] (imputed)	N
711	chr11	16587579	16587580	rs4578351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11p15.2		rs4578351-?	NR	3E-15				NR [~ 8900000] (imputed)	N
711	chr11	16601587	16601588	rs77886693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.2		rs77886693-T	0.049547	1E-12		0.0689319	[0.05-0.088] unit decrease	Illumina [13476266] (imputed)	N
711	chr11	16611088	16611089	rs12364964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.2	SOX6	rs12364964-G	0.289033	1E-43		0.0302559	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16611088	16611089	rs12364964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.2	SOX6	rs12364964-G	0.289024	8E-45		0.034604974	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16611474	16611475	rs56074687	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11p15.2	SOX6, C11orf58	rs56074687-T	0.71	2E-11		6.72	z-score increase	Affymetrix [4311822] (imputed)	N
711	chr11	16611474	16611475	rs56074687	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	SOX6	rs56074687-T	0.710902	1E-33		0.0259287	[0.022-0.03] unit decrease	NR [13737936] (imputed)	N
711	chr11	16611474	16611475	rs56074687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p15.2		rs56074687-?	NR	8E-38				NR [~ 8900000] (imputed)	N
711	chr11	16612935	16612936	rs12365482	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11p15.2	SOX6	rs12365482-T	0.2893	8E-23		0.03904242	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
711	chr11	16615279	16615280	rs4757417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.2		rs4757417-?	NR	7E-20				NR [~ 8900000] (imputed)	N
711	chr11	16615882	16615883	rs72632979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11p15.2		rs72632979-?	NR	2E-9				NR [~ 8900000] (imputed)	N
711	chr11	16618306	16618307	rs10832648	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p15.2	SOX6, C11orf58	rs10832648-C	0.8011	7E-12		1.0318981		Affymetrix [11880941] (imputed)	N
711	chr11	16618306	16618307	rs10832648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.2		rs10832648-?	NR	4E-8				NR [~ 8900000] (imputed)	N
711	chr11	16627777	16627778	rs5789958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.2		rs5789958-C	NR	3E-8		0.0169	[0.011-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
711	chr11	16630778	16630779	rs35199438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.2	SOX6	rs35199438-T	0.303683	2E-15		0.02184178	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr11	16630778	16630779	rs35199438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.2	SOX6	rs35199438-T	0.303681	1E-14		0.021181839	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr11	16630778	16630779	rs35199438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.2	SOX6	rs35199438-T	0.303647	5E-12		0.018895028	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr11	16630778	16630779	rs35199438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2	SOX6	rs35199438-T	0.30364	4E-12		0.019037671	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr11	16630778	16630779	rs35199438	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs35199438-T	0.3075	2E-12	(European)	0.0471	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
711	chr11	16630778	16630779	rs35199438	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs35199438-T	0.3035	2E-15		0.0489	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
711	chr11	16635423	16635424	rs78152188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs78152188-G	0.288729	1E-27		0.029697139	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16635423	16635424	rs78152188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs78152188-G	0.288733	5E-21		0.02567964	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16635423	16635424	rs78152188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs78152188-G	0.288616	8E-19		0.024078427	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16635423	16635424	rs78152188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs78152188-G	0.288618	1E-14		0.021035349	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
711	chr11	16638483	16638484	rs10766333	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p15.2		rs10766333-C	0.41149	4E-6		0.03195	[0.018-0.045] unit increase	Affymetrix [15580782] (imputed)	N
711	chr11	16641717	16641718	rs4756856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.2		rs4756856-?	NR	5E-13				NR [~ 8900000] (imputed)	N
711	chr11	16644679	16644680	rs55941903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.2	NR	rs55941903-C	0.348737	2E-61				Affymetrix, Illumina [24246363] (imputed)	N
711	chr11	16644679	16644680	rs55941903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.2	NR	rs55941903-C	0.413892	1E-57		0.029518	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
711	chr11	16644679	16644680	rs55941903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.2	NR	rs55941903-C	0.34358	6E-60				Affymetrix, Illumina [20825802] (imputed)	N
711	chr11	16644679	16644680	rs55941903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.2	NR	rs55941903-C	0.413777	3E-53		0.030067	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
711	chr11	16644679	16644680	rs55941903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.2		rs55941903-?	NR	7E-46				NR [~ 8900000] (imputed)	N
712	chr11	16646866	16646867	rs140491810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.2		rs140491810-A	NR	1E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
712	chr11	16646866	16646867	rs140491810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.2		rs140491810-A	NR	5E-39		0.0292	[0.025-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
712	chr11	16646866	16646867	rs140491810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.2		rs140491810-A	NR	4E-39		0.0292	[0.025-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
712	chr11	16664122	16664123	rs7482541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs7482541-C	0.415894	4E-13		0.016380088	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr11	16664122	16664123	rs7482541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.2	C11orf58, SOX6	rs7482541-C	0.415978	3E-18		0.019919941	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
712	chr11	16664122	16664123	rs7482541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p15.2	SOX6, C11orf58	rs7482541-C	0.4159	5E-18		0.03119197	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr11	16664122	16664123	rs7482541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p15.2	SOX6, C11orf58	rs7482541-C	0.4159	1E-18		0.03195267	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr11	16667833	16667834	rs11024008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.2	NR	rs11024008-T	0.337189	5E-16				Affymetrix, Illumina [24332387] (imputed)	N
712	chr11	16667833	16667834	rs11024008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.2	NR	rs11024008-T	0.413813	5E-18		0.016257	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
712	chr11	16672348	16672349	rs56928337	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs56928337-?	NR	4E-31		0.0308468	[0.026-0.036] unit increase	Affymetrix [20259828] (imputed)	N
712	chr11	16672348	16672349	rs56928337	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	C11orf58	rs56928337-GA	0.288455	2E-11	(women)	0.0320403	[0.022-0.042] unit increase	NR [17166351] (imputed)	N
712	chr11	16672348	16672349	rs56928337	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	C11orf58	rs56928337-GA	0.288408	1E-18		0.0322809	[0.025-0.04] unit increase	NR [17166351] (imputed)	N
712	chr11	16672348	16672349	rs56928337	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p15.2	C11orf58	rs56928337-GA	0.288355	2E-7	(men)	0.0290222	[0.018-0.04] unit increase	NR [17166351] (imputed)	N
712	chr11	16692956	16692957	rs72861294	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	11p15.2	NR	rs72861294-T	0.0118	4E-7		5.451	[3.33-7.57] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
712	chr11	16697640	16697641	rs7117140	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p15.2	C11orf58	rs7117140-C	0.178141	6E-14		0.0189827	[0.014-0.024] unit decrease	NR [13737936] (imputed)	N
712	chr11	16751576	16751576	rs34591978	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p15.2		rs34591978-?	NR	2E-32		0.0311261	[0.026-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
712	chr11	16756872	16756873	rs11024028	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11p15.2	C11ORF58	rs11024028-C	0.807246	6E-10		0.0648	[0.044-0.085] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
712	chr11	16756872	16756873	rs11024028	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11p15.2	C11ORF58	rs11024028-C	0.807246	3E-10		0.0574	[0.04-0.075] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
712	chr11	16756872	16756873	rs11024028	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Lumbar spine bone mineral density	23,699 European ancestry individuals, 1,526 whole genome sequenced European ancestry individuals, 3,273 whole exome sequenced European ancestry individuals	16,233 European ancestry individuals	11p15.2	SOX6	rs11024028-G	0.195	2E-8		0.05	[0.032-0.068] unit increase	Illumina [at least 10923926] (imputed)	N
712	chr11	16756872	16756873	rs11024028	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Femoral neck bone mineral density	26,320 European ancestry individuals, 2,868 whole genome sequenced European ancestry individuals, 3,547 whole exome sequenced European ancestry individuals	17,253 European ancestry individuals	11p15.2	SOX6	rs11024028-G	0.198	1E-9		0.05	[0.034-0.066] unit increase	Illumina [at least 10916125] (imputed)	N
712	chr11	16758245	16758246	rs3809095	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs3809095-A	0.7356	2E-12		0.0451	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
712	chr11	16758245	16758246	rs3809095	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p15.2	NR	rs3809095-A	0.7295	3E-10	(European)	0.0434	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
712	chr11	16759064	16759064	rs376898975	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11p15.2	SOX6, C11orf58	rs376898975-TA	0.4053	6E-19		0.0331029	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr11	16759064	16759064	rs376898975	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11p15.2	SOX6, C11orf58	rs376898975-TA	0.4053	7E-15		0.02887673	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
712	chr11	16759064	16759064	rs376898975	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11p15.2	SOX6, C11orf58	rs376898975-TA	0.4053	2E-12		0.02604947	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr11	16786904	16786905	rs61371450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p15.2		rs61371450-?	NR	1E-14				NR [~ 8900000] (imputed)	N
713	chr11	16789004	16789005	rs17472529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p15.2	NR	rs17472529-C	0.02456	3E-46		0.10784655	[0.093-0.123] unit increase	Affymetrix [93095623] (imputed)	N
713	chr11	16789004	16789005	rs17472529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p15.2	NR	rs17472529-C	0.02456	2E-37		0.096618444	[0.082-0.111] unit increase	Affymetrix [93095623] (imputed)	N
713	chr11	16789004	16789005	rs17472529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.2		rs17472529-C	0.024637	5E-35		0.08960334	[0.075-0.104] unit increase	Affymetrix [93095623] (imputed)	N
713	chr11	16789004	16789005	rs17472529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p15.2		rs17472529-C	0.024604	2E-29		0.0846428	[0.07-0.099] unit increase	Affymetrix [93095623] (imputed)	N
713	chr11	16789004	16789005	rs17472529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p15.2		rs17472529-C	0.0246	5E-25		0.0776252	[0.063-0.092] unit increase	Affymetrix [93095623] (imputed)	N
713	chr11	16806086	16806087	rs4756864	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	11p15.2	PLEKHA7	rs4756864-C		8E-6	(Trajectory class 2)	0.14	[0.081-0.199] unit increase	Illumina [at least 472049] (imputed)	N
713	chr11	16806086	16806087	rs4756864	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	11p15.2	PLEKHA7	rs4756864-C		2E-7	(Trajectory class 5)	0.26	[0.16-0.36] unit increase	Illumina [at least 472049] (imputed)	N
713	chr11	16837819	16837820	rs200072888	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	11p15.2	NR	rs200072888-G		3E-7		1.0114	[0.62-1.4] SD units decrease	NR [10700000] (imputed)	N
713	chr11	16854630	16854631	rs567415847	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11p15.2	NR	rs567415847-G	0.997973	1E-14		0.283381	[0.21-0.36] unit increase	Affymetrix [16668957] (imputed)	N
713	chr11	16857798	16857799	rs382280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.2	PLEKHA7	rs382280-T	0.121	5E-12	(Pleckstrin homology domain-containing family A member 7, PLEKHA7.12731.12.3)	0.28	[0.2-0.36] unit increase	Affymetrix [10572788] (imputed)	N
713	chr11	16886891	16886892	rs407354	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.2	PLEKHA7	rs407354-C	0.89328125	1E-8	(PLEKHA7, 12731_12_3)	0.22501093	[0.15-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
713	chr11	16894089	16894090	rs414992	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.2	PLEKHA7	rs414992-T	0.1365	9E-11		0.3128	[0.22-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
713	chr11	16900102	16900103	rs448671	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.2	PLEKHA7	rs448671-T	0.73	6E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
713	chr11	16902267	16902268	rs381815	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.2	PLEKHA7	rs381815-T	0.275	3E-6	(EA, initial)	0.375	[0.22-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
713	chr11	16902267	16902268	rs381815	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.2	PLEKHA7	rs381815-T	0.275	1E-6	(EA, initial)	0.236	[0.14-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
713	chr11	16902267	16902268	rs381815	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	PLEKHA7	rs381815-C		2E-7		0.223	unit decrease	Affymetrix [at least 2696785] (imputed)	N
713	chr11	16902267	16902268	rs381815	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.2	PLEKHA7	rs381815-C		3E-6		0.122	unit decrease	Affymetrix [at least 2696785] (imputed)	N
713	chr11	16902267	16902268	rs381815	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.2	PLEKHA7	rs381815-T	0.30	7E-6	(Pulse Pressure)	0.236	[0.13-0.34] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
713	chr11	16902267	16902268	rs381815	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11p15.2	PLEKHA7	rs381815-T	0.30	3E-8	(Mean Arterial Pressure)	0.298	[0.19-0.41] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
713	chr11	16902267	16902268	rs381815	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	11p15.2	PLEKHA7	rs381815-T	0.26	2E-9		0.65	[0.43-0.87] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
714	chr11	16911635	16911636	rs416258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.2		rs416258-?	NR	7E-9				NR [~ 8900000] (imputed)	N
714	chr11	16911635	16911636	rs416258	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.2	PLEKHA7	rs416258-C	0.3	5E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
714	chr11	16911635	16911636	rs416258	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	PLEKHA7	rs416258-C	0.3	6E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
714	chr11	16914005	16914006	rs7940807	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11p15.2	PLEKHA7	rs7940807-T	0.25	2E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
714	chr11	16917218	16917219	rs11024074	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p15.2	PLEKHA7	rs11024074-T	0.7084	7E-8		0.0328	[0.021-0.045] unit decrease	NR [8041861] (imputed)	N
714	chr11	16917218	16917219	rs11024074	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11p15.2	PLEKHA7	rs11024074-C	0.30010171702084	3E-11		0.33034688	[0.23-0.43] unit increase	Illumina [247039]	N
714	chr11	16917218	16917219	rs11024074	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	11p15.2	PLEKHA7	rs11024074-T	0.72	1E-6		0.33	[0.19-0.47] mm Hg decrease	Affymetrix, Illumina [2533153] (imputed)	N
714	chr11	16922653	16922654	rs177542	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.1	intergenic	rs177542-A	0.503	4E-8	(EA, initial)	0.243	[0.16-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
714	chr11	16937845	16937846	rs183937294	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	11p15.1	PLEKHA7	rs183937294-G	0.007	2E-8		17.22	[NR]	Illumina [up to 49000000] (imputed)	N
714	chr11	17001426	17001427	rs34927905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11p15.1		rs34927905-T	NR	5E-13		0.0841	[0.061-0.107] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
714	chr11	17004089	17004090	rs7127818	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11p15.1	PLEKHA7	rs7127818-?	NR	7E-19		0.636	[0.49-0.78] unit decrease	Affymetrix [11100000] (imputed)	N
714	chr11	17007061	17007062	rs10832707	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs10832707-A	0.419	4E-6		1.23		NR [11110260] (imputed)	N
714	chr11	17007219	17007220	rs2353369	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs2353369-A	0.419	4E-6		1.23		NR [11110260] (imputed)	N
714	chr11	17008604	17008605	rs11024102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11p15.1		rs11024102-C	0.45251608	1E-8		0.094170585	[0.062-0.126] unit increase	Illumina [13429686] (imputed)	N
714	chr11	17008604	17008605	rs11024102	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p15.1	PLEKHA7	rs11024102-T	0.7118	3E-10		0.095	[0.065-0.125] unit decrease	Affymetrix [~ 11900000] (imputed)	N
714	chr11	17008604	17008605	rs11024102	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	11p15.1	PLEKHA7	rs11024102-G		8E-19	(Asian)	1.2	[NR]	Illumina [5245080] (imputed)	N
714	chr11	17008604	17008605	rs11024102	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	11p15.1	PLEKHA7	rs11024102-G		2E-18		1.18	[NR]	Illumina [5245080] (imputed)	N
714	chr11	17008604	17008605	rs11024102	22922875	Vithana EN	2012-08-26	Nat Genet	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	11p15.1	PLEKHA7	rs11024102-G	NR	5E-12		1.22	[NR]	Illumina [493501]	N
714	chr11	17008643	17008644	rs10832709	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs10832709-C	0.4202	5E-6		1.227		NR [11110260] (imputed)	N
714	chr11	17008807	17008808	rs11024103	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs11024103-A	0.4203	1E-5		1.221		NR [11110260] (imputed)	N
714	chr11	17010210	17010210	rs5789966	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs5789966-G	0.4195	4E-6		1.23		NR [11110260] (imputed)	N
714	chr11	17010671	17010672	rs6486333	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs6486333-G	0.4192	4E-6		1.231		NR [11110260] (imputed)	N
714	chr11	17010921	17010922	rs4757472	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs4757472-G	0.417	2E-6		1.237		NR [11110260] (imputed)	N
714	chr11	17011175	17011176	rs4141194	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	11p15.1	PLEKHA7	rs4141194-A	NR	1E-6		1.10329	[1.06-1.14]	Illumina [11610548] (imputed)	N
714	chr11	17011175	17011176	rs4141194	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11p15.1	PLEKHA7	rs4141194-A	NR	9E-15		0.0616	unit increase	Illumina [15409056] (imputed)	N
714	chr11	17011175	17011176	rs4141194	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11p15.1	PLEKHA7	rs4141194-C	0.71	1E-15				Affymetrix, Illumina [8002429] (imputed)	N
714	chr11	17011175	17011176	rs4141194	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11p15.1	PLEKHA7	rs4141194-?	NR	4E-16		0.1143	[0.087-0.142] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
714	chr11	17011175	17011176	rs4141194	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p15.1	PLEKHA7	rs4141194-C	0.709	7E-21		0.131	[0.1-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
714	chr11	17011175	17011176	rs4141194	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p15.1	PLEKHA7	rs4141194-C	0.7123	1E-10		0.097	[0.067-0.127] unit decrease	Affymetrix [~ 11900000] (imputed)	N
714	chr11	17012673	17012674	rs12418132	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.1		rs12418132-T	0.42	5E-10		6.21	z score increase	Affymetrix [9061022] (imputed)	N
714	chr11	17012673	17012674	rs12418132	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.1	NR	rs12418132-T	0.3767	1E-12				NR [9056863] (imputed)	N
714	chr11	17012955	17012956	rs10832710	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs10832710-C	0.417	2E-6		1.236		NR [11110260] (imputed)	N
714	chr11	17013151	17013152	rs10766367	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs10766367-A	0.4161	3E-6		1.235		NR [11110260] (imputed)	N
714	chr11	17013973	17013974	rs4757474	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs4757474-T	0.4154	2E-6		1.238		NR [11110260] (imputed)	N
714	chr11	17015556	17015557	rs6486334	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs6486334-T	0.4161	3E-6		1.235		NR [11110260] (imputed)	N
714	chr11	17016415	17016416	rs4757475	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs4757475-A	0.4159	3E-6		1.236		NR [11110260] (imputed)	N
714	chr11	17017079	17017080	rs10832712	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs10832712-T	0.4159	3E-6		1.236		NR [11110260] (imputed)	N
714	chr11	17017621	17017622	rs2302207	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	11p15.1		rs2302207-C	0.4159	3E-6		1.236		NR [11110260] (imputed)	N
714	chr11	17022893	17022894	rs1468489	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p15.1	NR	rs1468489-T	0.377	3E-14				NR [9056863] (imputed)	N
714	chr11	17026853	17026854	rs7926143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.1		rs7926143-A	0.39	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
714	chr11	17028188	17028189	rs57677839	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11p15.1	PLEKHA7	rs57677839-A	0.588	1E-6		0.033	[0.019-0.047] unit decrease	Affymetrix [7947838] (imputed)	N
714	chr11	17028389	17028390	rs11024110	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11p15.1	NR	rs11024110-A		9E-14		0.12	[0.081-0.159] unit increase	NR [NR]	N
714	chr11	17028819	17028820	rs7947897	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.1		rs7947897-C	0.43	2E-24		10.2	z score increase	Affymetrix [9061022] (imputed)	N
714	chr11	17030659	17030660	rs4757489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.1	NR	rs4757489-G	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
714	chr11	17030659	17030660	rs4757489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p15.1	NR	rs4757489-G	NR	9E-10		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
714	chr11	17034555	17034559	rs34794528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p15.1		rs34794528-C	NR	5E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
714	chr11	17037792	17037793	rs7130826	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p15.1	RPS13	rs7130826-T	0.7258	1E-8		0.01281377	[0.0084-0.0172] unit increase	Affymetrix [11514654] (imputed)	N
715	chr11	17070364	17070365	rs75742406	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11p15.1		rs75742406-G	0.739	1E-9		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
715	chr11	17088191	17088191	rs10660035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p15.1		rs10660035-ACT	NR	2E-15		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
715	chr11	17115675	17115676	rs16933829	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	11p15.1	NR	rs16933829-C	NR	1E-6	(phenotype 1)	4.7619047	[NR]	Illumina [> 8000000] (imputed)	N
715	chr11	17115675	17115676	rs16933829	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	11p15.1	NR	rs16933829-C	NR	1E-6	(phenotype 3)	4.76	[NR]	Illumina [> 8000000] (imputed)	N
715	chr11	17126669	17126670	rs2052188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs2052188-?	NR	2E-27				NR [~ 8900000] (imputed)	N
715	chr11	17134662	17134663	rs1236309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs1236309-G	0.415112	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
715	chr11	17160147	17160148	rs4356203	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	11p15.1	PIK3C2A	rs4356203-?		6E-9	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
715	chr11	17160147	17160148	rs4356203	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11p15.1	NR	rs4356203-?	NR	1E-7		1.09	[1.06-1.12]	Affymetrix, Illumina [1252901] (imputed)	N
716	chr11	17176056	17176057	rs7946010	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,366 Icelandic ancestry individuals	NA	11p15.1		rs7946010-A	0.4631	5E-18		0.166655	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
716	chr11	17184622	17184623	rs2008905	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	11p15.1	NR	rs2008905-T	0.42	7E-14		0.36	[0.26-0.46] unit decrease	Affymetrix [9231066] (imputed)	N
716	chr11	17184622	17184623	rs2008905	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	11p15.1	NR	rs2008905-T	0.42	7E-14		0.36	[0.26-0.46] unit decrease	Affymetrix [9231066] (imputed)	N
716	chr11	17184622	17184623	rs2008905	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p15.1	NR	rs2008905-T	NR	8E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
716	chr11	17193474	17193475	rs214934	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11p15.1	NR	rs214934-T	0.6877	3E-9		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
716	chr11	17195862	17195863	rs12788073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p15.1	PIK3C2A	rs12788073-A	0.430768	1E-13		0.018005168	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr11	17195862	17195863	rs12788073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p15.1	NR	rs12788073-A	0.43313	4E-12		0.014963	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
716	chr11	17202075	17202076	rs79271765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p15.1	NR	rs79271765-C	NR	4E-10		0.0219	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
716	chr11	17206518	17206519	rs664382	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.1	PIK3C2A	rs664382-A	0.68	1E-8	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
716	chr11	17245084	17245085	rs759582068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p15.1	NR	rs759582068-D	0.493239	2E-13		0.015003	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
716	chr11	17245085	17245086	rs59029981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p15.1	NUCB2	rs59029981-C	0.493298	3E-13		0.01693527	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
716	chr11	17291209	17291210	rs214099	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	NUCB2	rs214099-C	0.594	2E-14	(C-C motif chemokine 25, CCL25.14068.29.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
716	chr11	17298813	17298814	rs214084	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	11p15.1	NUCB2	rs214084-A	0.421113	3E-8		1.0247266	NR	Affymetrix [~ 9600000] (imputed)	N
716	chr11	17298813	17298814	rs214084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p15.1		rs214084-?	NR	3E-9				NR [~ 8900000] (imputed)	N
716	chr11	17299761	17299762	rs214080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p15.1	NR	rs214080-G	0.579931	1E-10		0.012908	[0.009-0.0168] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
717	chr11	17316028	17316029	rs1330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs1330-T	0.3426	4E-8	(EA)	0.0216	[0.014-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17316028	17316029	rs1330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.1	NUCB2	rs1330-T	0.3426	3E-7	(EA)	0.0234	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17316028	17316029	rs1330	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs1330-?	0.3426	4E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17316028	17316029	rs1330	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p15.1	NUCB2	rs1330-T	0.35	5E-9		0.022	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
717	chr11	17324947	17324948	rs56213534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p15.1		rs56213534-?	NR	3E-10				NR [~ 8900000] (imputed)	N
717	chr11	17351682	17351683	rs757081	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	11p15.1		rs757081-C	0.66	4E-28		0.092	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
717	chr11	17351682	17351683	rs757081	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	11p15.1	NR	rs757081-C	0.6627	4E-10		0.0113	[0.0078-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
717	chr11	17351682	17351683	rs757081	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p15.1	NUCB2	rs757081-G	0.334	4E-6	(EA, initial)	0.352	[0.2-0.5] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
717	chr11	17351682	17351683	rs757081	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.1	NUCB2	rs757081-C		5E-11		0.267	unit decrease	Affymetrix [at least 2696785] (imputed)	N
717	chr11	17351682	17351683	rs757081	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p15.1	NUCB2	rs757081-C		8E-8		0.146	unit decrease	Affymetrix [at least 2696785] (imputed)	N
717	chr11	17354774	17354775	rs11024256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs11024256-T	0.656315	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
717	chr11	17365208	17365209	rs2051773	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs2051773-G	0.2911	5E-6	(women)	0.0271	[0.016-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17365208	17365209	rs2051773	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs2051773-G	0.2911	3E-8		0.0218	[0.014-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17365208	17365209	rs2051773	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs2051773-G	0.2911	3E-6	(men)	0.0273	[0.016-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17365208	17365209	rs2051773	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p15.1	NUCB2	rs2051773-G	0.2911	3E-7		0.0235	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17365208	17365209	rs2051773	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p15.1	NUCB2	rs2051773-?	0.2911	2E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
717	chr11	17368017	17368017	rs199518026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p15.1	NUCB2	rs199518026-TC	NR	7E-10		0.0198668	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
717	chr11	17368018	17368018	rs67951613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p15.1		rs67951613-TAA	NR	5E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
717	chr11	17372442	17372443	rs7928810	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11p15.1	NCR3LG1	rs7928810-A	0.6392	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
717	chr11	17372442	17372443	rs7928810	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11p15.1	NCR3LG1	rs7928810-A	0.6392	9E-12				Affymetrix, Illumina [2331072] (imputed)	N
717	chr11	17372442	17372443	rs7928810	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p15.1	NR	rs7928810-C	NR	4E-6		0.012	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
717	chr11	17372442	17372443	rs7928810	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p15.1	NUCB2, ABCC8, KCNJ11, USH1C, MYOD1, KCNC1, SERGEF, PLEKHA7, RPS13, OR7E14P, PIK3C2A	rs7928810-A	0.600869883424172	6E-9		0.015948385	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr11	17385223	17385224	rs10832776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p15.1		rs10832776-A	NR	3E-16		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
717	chr11	17403638	17403639	rs1557765	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p15.1	RP1-239B22.5	rs1557765-T	NR	4E-8		0.0176783	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
717	chr11	17403638	17403639	rs1557765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p15.1		rs1557765-?	NR	1E-23				NR [~ 8900000] (imputed)	N
717	chr11	17403638	17403639	rs1557765	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.1	KCNJ11	rs1557765-T	0.3713	2E-17		0.2227	[0.17-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
717	chr11	17403638	17403639	rs1557765	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p15.1	PLEKHA7, RPS13, OR7E14P, PIK3C2A, NUCB2, NCR3LG1, ABCC8, USH1C, MYOD1, KCNC1, SERGEF	rs1557765-T	0.402033003855459	3E-9		0.016422343	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr11	17403638	17403639	rs1557765	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.1	KCNJ11	rs1557765-C	0.601	6E-7		0.015	[0.0091-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
717	chr11	17403638	17403639	rs1557765	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p15.1	KCNJ11	rs1557765-C	0.596	2E-6	(EA)	0.015	[0.0089-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
717	chr11	17403638	17403639	rs1557765	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	11p15.1	KCNJ11	rs1557765-C	0.63	7E-6	(Age 8)	0.12	[0.061-0.179] unit increase	Illumina [2293137] (imputed)	N
717	chr11	17404838	17404839	rs10734252	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	11p15.1	KCNJ11	rs10734252-G	0.38	4E-10		1.1111112	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
717	chr11	17404838	17404839	rs10734252	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p15.1	KCNJ11	rs10734252-A	0.6206	4E-17		0.3026	[0.23-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
717	chr11	17404838	17404839	rs10734252	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11p15.1	KCNJ11	rs10734252-A	0.62	5E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
717	chr11	17405616	17405617	rs1002226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p15.1		rs1002226-T	NR	4E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
717	chr11	17405616	17405617	rs1002226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p15.1	NR	rs1002226-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
717	chr11	17405616	17405617	rs1002226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p15.1	NR	rs1002226-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
717	chr11	17405616	17405617	rs1002226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p15.1		rs1002226-?	NR	1E-8				NR [~ 8900000] (imputed)	N
717	chr11	17408403	17408404	rs5213	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	11p15.1	KCNJ11	rs5213-C	0.347606	8E-9		0.07067956	[0.047-0.095] unit increase	Affymetrix [7288503] (imputed)	N
717	chr11	17408403	17408404	rs5213	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.1	KCNJ11	rs5213-C	0.3624	4E-27		1.07	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
717	chr11	17408629	17408630	rs5215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.1		rs5215-T	NR	2E-22		0.0623	[0.05-0.075] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
717	chr11	17408629	17408630	rs5215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p15.1		rs5215-T	NR	2E-15		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
717	chr11	17408629	17408630	rs5215	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	11p15.1	NR	rs5215-C	NR	1E-11		1.07	NR	NR [8016731] (imputed)	N
717	chr11	17408629	17408630	rs5215	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	11p15.1	ABCC8, KCNJ11, NCR3LG1	rs5215-?	NR	2E-12				NR [NR]	N
717	chr11	17408629	17408630	rs5215	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p15.1	NA	rs5215-T	0.6314	1E-11		0.0113	[0.008-0.0146] unit increase	NR [~ 27400000] (imputed)	N
717	chr11	17408629	17408630	rs5215	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11p15.1	KCNJ11	rs5215-C	0.360058778070131	2E-20		0.0678	[0.053-0.082] unit increase	NR [5035015] (imputed)	N
717	chr11	17408629	17408630	rs5215	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11p15.1	KCNJ11, ABCC8	rs5215-C	0.389	5E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [247470]	N
717	chr11	17408629	17408630	rs5215	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11p15.1	KCNJ11, ABCC8	rs5215-C	0.389	4E-17		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
717	chr11	17408629	17408630	rs5215	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p15.1	KCNJ11	rs5215-T	0.66	3E-11		0.016	[0.012-0.02] unit increase	Illumina [6108953] (imputed)	N
717	chr11	17408629	17408630	rs5215	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.1	KCNJ11	rs5215-T	0.6471	8E-14	(EA)	0.0754	[0.056-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
717	chr11	17408629	17408630	rs5215	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11p15.1	KCNJ11	rs5215-T	0.6471	1E-20		0.068	[0.054-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
717	chr11	17408629	17408630	rs5215	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	11p15.1	KCNJ11	rs5215-C	0.38	3E-11		1.08	[1.04-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
717	chr11	17408629	17408630	rs5215	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11p15.1	KCNJ11	rs5215-C	0.407702923283646	9E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
717	chr11	17408629	17408630	rs5215	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	11p15.1	KCNJ11	rs5215-C	NR	4E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [2202892] (imputed)	N
717	chr11	17408629	17408630	rs5215	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	11p15.1	KCNJ11	rs5215-C	NR	5E-11	(DGI+FUSION+WTCCC)	1.14	[1.10-1.19]	Affymetrix [393453]	N
717	chr11	17409571	17409572	rs5219	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.1		rs5219-T	0.35	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
717	chr11	17409571	17409572	rs5219	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p15.1	NR	rs5219-C	0.6272	3E-48		0.0685	[0.059-0.078] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
717	chr11	17409571	17409572	rs5219	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p15.1	KCNJ11	rs5219-T	0.37	4E-6		1.04	1.02-1.06	Illumina [12557761] (imputed)	N
717	chr11	17409571	17409572	rs5219	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11p15.1	KCNJ11	rs5219-T	0.364	2E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [247470]	N
717	chr11	17409571	17409572	rs5219	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11p15.1	KCNJ11	rs5219-T	0.364	6E-22		1.06	[1.05-1.07]	Affymetrix, Illumina [247470]	N
717	chr11	17409571	17409572	rs5219	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p15.1	KCNJ11	rs5219-C	0.6377999999999999	4E-10		0.0115	[0.008-0.015] unit increase	Illumina [246328]	N
717	chr11	17409571	17409572	rs5219	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	11p15.1	KCNJ11	rs5219-T	0.32	5E-12		0.32	[0.22-0.42] unit increase	Illumina [247039]	N
717	chr11	17409571	17409572	rs5219	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	11p15.1	KCNJ11	rs5219-T	0.365	3E-7	(EA)	0.18	[0.12-0.24] unit increase	Illumina [247039]	N
717	chr11	17409571	17409572	rs5219	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11p15.1	KCNJ11, ABCC8	rs5219-T	0.319522841679773	4E-9		0.29267842	[0.2-0.39] unit increase	Illumina [247039]	N
717	chr11	17409571	17409572	rs5219	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	11p15.1	KCNJ11	rs5219-?	NR	5E-7	(obese)	1.19	[1.11-1.27]	Affymetrix [393453]	N
717	chr11	17409571	17409572	rs5219	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	11p15.1	KCNJ11	rs5219-?	NR	1E-9	(non-obese)	1.25	[1.16-1.34]	Affymetrix [393453]	N
717	chr11	17409571	17409572	rs5219	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	11p15.1	KCNJ11	rs5219-T	0.46	7E-11	(DGI+FUSION+WTCCC)	1.14	[1.10-1.19]	Illumina [315635]	N
717	chr11	17409571	17409572	rs5219	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	11p15.1	KCNJ11	rs5219-T	0.47	7E-11		1.14	[1.10-1.19]	Affymetrix [386731]	N
717	chr11	17411820	17411821	rs2074314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11p15.1		rs2074314-?	NR	2E-12				NR [~ 8900000] (imputed)	N
717	chr11	17415189	17415190	rs4148646	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	11p15.1	ABCC8	rs4148646-C	0.3957	4E-8		0.0397	[0.024-0.055] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
717	chr11	17415189	17415190	rs4148646	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11p15.1	KCNJ11, ABCC8	rs4148646-C	0.385	2E-26		1.08	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
717	chr11	17415189	17415190	rs4148646	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	11p15.1	ABCC8	rs4148646-C	0.3923	9E-6		0.3922	[0.22-0.57] unit decrease	Illumina [at least 4683137] (imputed)	N
717	chr11	17418476	17418477	rs757110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p15.1		rs757110-A	0.611936723	1E-10		0.060134325	[0.042-0.078] unit decrease	Illumina [13429769] (imputed)	N
717	chr11	17418476	17418477	rs757110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11p15.1		rs757110-A	NR	4E-13		0.0562	[0.041-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
717	chr11	17418476	17418477	rs757110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p15.1		rs757110-A	NR	1E-24		0.0215	[0.017-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
717	chr11	17418476	17418477	rs757110	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.1	NR	rs757110-C	0.3704	5E-52		0.0599	[0.052-0.068] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
717	chr11	17418476	17418477	rs757110	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p15.1		rs757110-A	0.610741048	8E-10		0.94955945	[0.93400913-0.965368627]	Illumina [8919992] (imputed)	N
717	chr11	17418476	17418477	rs757110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p15.1		rs757110-?	NR	7E-8				NR [~ 8900000] (imputed)	N
717	chr11	17418476	17418477	rs757110	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		11p15.1	KCNJ11	rs757110-C	NR	7E-8		1.09		Affymetrix, Illumina [1918233] (imputed)	N
717	chr11	17418476	17418477	rs757110	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11p15.1	KCNJ11	rs757110-C	NR	3E-6	(men)	1.07	[1.04-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
717	chr11	17420840	17420841	rs61415111	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	11p15.1	NR	rs61415111-?	0.02	3E-7		4.6	[2.57-8.24]	Affymetrix, Illumina [~ 6000000] (imputed)	N
717	chr11	17421859	17421860	rs2074311	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p15.1	NR	rs2074311-G	NR	4E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr11	17421885	17421886	rs2074310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p15.1	NR	rs2074310-C	0.642513	2E-12		0.00603772	[0.0043-0.0078] unit increase	Affymetrix [16582909] (imputed)	N
717	chr11	17423919	17423920	rs113719324	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.1	NR	rs113719324-T	0.01568	8E-10	(MPO)	0.1108	NR unit increase	Illumina [1671387] (imputed)	N
717	chr11	17427900	17427901	rs2077654	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	11p15.1	ABCC8	rs2077654-?		1E-7				Illumina [479403]	N
718	chr11	17436192	17436193	rs1800851	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11p15.1	NR	rs1800851-?	NR	7E-6		0.005399	[0.003-0.0078] unit increase	Affymetrix [9658292] (imputed)	N
718	chr11	17461542	17461543	rs2237979	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11p15.1	ABCC8	rs2237979-C	0.45	9E-7	(African American)	0.41	[0.25-0.57] unit decrease	Illumina [up to 13042663] (imputed)	N
718	chr11	17470142	17470143	rs67254669	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p15.1	KCNJ11	rs67254669-G	0.0011	1E-8		1.89	[1.52-2.35]	Affymetrix, Illumina [~ 27000000] (imputed)	N
718	chr11	17476459	17476460	rs4148613	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	11p15.1	ABCC8	rs4148613-?		1E-7				Illumina [479403]	N
718	chr11	17498056	17498057	rs77889556	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	11p15.1		rs77889556-G	0.83315	6E-10		0.0550453	[0.036-0.074] decrease	Affymetrix [NR]	N
718	chr11	17498056	17498057	rs77889556	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.1	ABCC8	rs77889556-A	0.1674	1E-16		0.022	[0.017-0.027] unit increase	Affymetrix [18391927] (imputed)	N
718	chr11	17498056	17498057	rs77889556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs77889556-?	NR	1E-9				NR [~ 8900000] (imputed)	N
718	chr11	17499693	17499694	rs36234212	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	11p15.1	ABCC8	rs36234212-T	NR	7E-6		0.206	[0.12-0.3] unit decrease	Illumina [6319684] (imputed)	N
718	chr11	17501603	17501604	rs73433183	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11p15.1	NR	rs73433183-?	NR	3E-7		4.89	[3.79-6.31]	Illumina [539000] (imputed)	N
718	chr11	17553104	17553105	rs2041027	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11p15.1	USH1C	rs2041027-?	NR	1E-11		0.45	[0.31-0.59] unit decrease	Affymetrix [11100000] (imputed)	N
719	chr11	17580174	17580175	rs7130190	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11p15.1		rs7130190-T	NR	9E-14		1.07767		Affymetrix, Illumina [62056310] (imputed)	N
719	chr11	17597380	17597381	rs11024326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	ABCC8	rs11024326-?	NR	7E-6	(glutamate)	0.26519236	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
719	chr11	17618730	17618731	rs114639778	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p15.1	OTOG	rs114639778-G	0.998	2E-6	(AA)	0.257	unit increase	Illumina [NR] (imputed)	N
719	chr11	17642128	17642129	rs78894156	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p15.1	intergenic	rs78894156-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
719	chr11	17648643	17648644	rs7112338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	MYOD1	rs7112338-?	NR	1E-6	(ureidopropionic acid)	0.21349761	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
719	chr11	17655838	17655839	rs12277962	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	11p15.1	OTOG, MYOD1, USH1C, KCNC1	rs12277962-T	NR	2E-6	(wake after sleep onset, weekdays)	0.09052	[0.053-0.128] unit increase	Affymetrix [7141204] (imputed)	N
719	chr11	17671928	17671929	rs7481960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p15.1		rs7481960-?	NR	7E-10				NR [~ 8900000] (imputed)	N
719	chr11	17684731	17684732	rs6486386	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.1	NR	rs6486386-?		3E-6				Illumina [4322238] (imputed)	N
720	chr11	17741839	17741840	rs148704904	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	11p15.1	MYOD1	rs148704904-T	0.433	4E-11		0.01667		Illumina [243345]	N
720	chr11	17754453	17754454	rs150481830	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	11p15.1		rs150481830-T	0.458321	5E-7		0.0117183	[0.006-0.0175] unit increase	Illumina [7666802] (imputed)	N
720	chr11	17756350	17756351	rs150102860	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	11p15.1		rs150102860-G	0.714484	9E-6		0.0131906	[0.0074-0.019] unit decrease	Illumina [13900000] (imputed)	N
720	chr11	17758586	17758587	rs7926805	27296613	Salinas YD	2016-06-13	BMC Genet	Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans.	Body mass index	1,235 Hispanic individuals, 706 Asian ancestry individuals, 1,549 African American individuals, 2,395 European ancestry individuals	3,379 Hispanic individuals, 6,871 African American individuals		NR	rs7926805-C		1E-6	(European)	0.8	[0.48-1.11] kg/m2 decrease	Affymetrix [up to 871948]	N
720	chr11	17796110	17796111	rs60349741	24143882	Gelernter J	2013-10-19	Biol Psychiatry	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African American controls	2,116 European ancestry individuals, 4,496 African American individuals	11p15.1	KCNC1	rs60349741-?	0.06	5E-7	(AA)			Illumina [988306]	N
720	chr11	17810959	17810960	rs4757589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.1	Intergenic	rs4757589-T	0.535	6E-9	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
721	chr11	17831999	17832000	rs2079227	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11p15.1	SERGEF	rs2079227-A	0.4694	3E-8		0.012380583	[0.008-0.0168] unit increase	Affymetrix [11514936] (imputed)	N
721	chr11	17871272	17871273	rs142343672	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	11p15.1	LOC107984317	rs142343672-A	0.01	5E-9	(Women)	67.0	[45-90] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
721	chr11	17871272	17871273	rs142343672	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	11p15.1	LOC107984317	rs142343672-A	0.01	5E-8		59.0	[38-80] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
722	chr11	18026460	18026461	rs211137	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	11p15.1	SERGEF	rs211137-T	0.4357	2E-7	(male)	0.1329	[0.083-0.183] unit decrease	NR [NR] (imputed)	N
722	chr11	18034197	18034198	rs211109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p15.1		rs211109-C	NR	4E-10		0.0148	[0.01-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
722	chr11	18034197	18034198	rs211109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p15.1		rs211109-C	NR	4E-8		0.0137	[0.0088-0.0186] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
722	chr11	18066301	18066302	rs11024451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p15.1	TPH1	rs11024451-A	0.26545	7E-9		0.014693213	[0.0097-0.0197] unit increase	Affymetrix [93095623] (imputed)	N
722	chr11	18067020	18067020	rs11434755	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p15.1	TPH1	rs11434755-?	0.5737	2E-8		0.0152	[0.0099-0.0205] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
722	chr11	18076438	18076439	rs12792460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs12792460-G	0.235611	9E-13				Affymetrix, Illumina [24649327] (imputed)	N
722	chr11	18076438	18076439	rs12792460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p15.1	NR	rs12792460-G	0.271243	4E-14		0.015654	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
722	chr11	18082482	18082483	rs11024458	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p15.1	NA	rs11024458-G		6E-9		0.0121282	[0.008-0.0162] unit increase	Illumina [13288253] (imputed)	N
722	chr11	18082482	18082483	rs11024458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11p15.1	NR	rs11024458-A	0.728256	2E-10		0.0188637	[0.013-0.025] unit increase	Affymetrix [16580851] (imputed)	N
723	chr11	18105870	18105871	rs6486406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs6486406-?	NR	3E-14				NR [~ 8900000] (imputed)	N
723	chr11	18126290	18126291	rs12360537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs12360537-C	0.369063	8E-10				Affymetrix, Illumina [23472807] (imputed)	N
723	chr11	18163881	18163882	rs2468832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p15.1	NR	rs2468832-A	0.238866	2E-11		0.015199	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
723	chr11	18165340	18165341	rs4757618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.1		rs4757618-?	NR	3E-10				NR [~ 8900000] (imputed)	N
723	chr11	18171365	18171366	rs76910421	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	11p15.1	NR	rs76910421-C	0.9762	3E-8		1.4411	[0.93-1.95] unit increase	Affymetrix, Illumina [12989706] (imputed)	N
724	chr11	18220688	18220689	rs75575009	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS6	5,357 Icelandic ancestry individuals	NA	11p15.1		rs75575009-C	0.02776	1E-37		0.698916	[0.59-0.81] unit increase	Illumina [7506463] (imputed)	N
724	chr11	18231748	18231749	rs2468789	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	RP11-113D6.10	rs2468789-G	0.974	3E-25	(Phenylalanine--tRNA ligase, mitochondrial, FARS2.13941.82.3)	0.8	[0.64-0.96] unit decrease	Affymetrix [10572788] (imputed)	N
724	chr11	18234711	18234712	rs3100768	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SURF1	5,347 Icelandic ancestry individuals	NA	11p15.1		rs3100768-T	0.02802	2E-40		0.701552	[0.6-0.8] unit increase	Illumina [7506463] (imputed)	N
724	chr11	18246637	18246638	rs2956633	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	SAA4	rs2956633-A	0.973	3E-40	(Surfeit locus protein 1, SURF1.8009.121.3)	0.99	[0.85-1.13] unit decrease	Affymetrix [10572788] (imputed)	N
724	chr11	18256907	18256907	rs11434877	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	SAA4	rs11434877-AT	0.974	2E-82	(A disintegrin and metalloproteinase with thrombospondin motifs 6, ADAMTS6.6441.62.3)	1.45	[1.29-1.61] unit decrease	Affymetrix [10572788] (imputed)	N
724	chr11	18257122	18257123	rs2925145	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	11p15.1	NR	rs2925145-?	NR	4E-6		0.0683	[0.039-0.097] unit increase	Illumina [1224134] (imputed)	N
724	chr11	18265798	18265799	rs12282742	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11p15.1	NR	rs12282742-?	NR	1E-6		1.6703	[NR]	Affymetrix [722112]	N
724	chr11	18270604	18270605	rs7130337	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	11p15.1	SAA2-SAA4, SAA1	rs7130337-G	NR	5E-6		0.102968	[0.059-0.147] unit decrease	Illumina [at least 950000] (imputed)	N
724	chr11	18277115	18277116	rs10832912	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	SAA plasma levels	400 French ancestry individuals	NA	11p15.1		rs10832912-G	NR	5E-11		0.703	[0.51-0.9] ng/mL increase	Illumina [5201092] (imputed)	N
724	chr11	18278911	18278912	rs7950019	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11p15.1	NR	rs7950019-?	NR	5E-45	(SAA)	1.53	[1.32-1.74] unit increase	Illumina [4020654] (imputed)	N
724	chr11	18280634	18280635	rs1993373	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	11p15.1	NR	rs1993373-?	NR	2E-71	(SAA)			Illumina [~ 4000000] (imputed)	N
724	chr11	18280634	18280635	rs1993373	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p15.1	SAA1, ST13P5, RNA5SP334	rs1993373-A	0.3410231	2E-105	(Serum amyloid A-1 protein)	0.917	[0.84-0.99] unit increase	Affymetrix [509946]	N
724	chr11	18280634	18280635	rs1993373	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	11p15.1	NR	rs1993373-?	NR	2E-11	(Serum amyloid A-1 protein)			Illumina [514227]	N
724	chr11	18285773	18285774	rs4638289	21124955	Marzi C	2010-11-18	PLoS Genet	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian (founder/genetic isolate) individuals	2,136 European ancestry individuals	11p15.1	SAA1	rs4638289-A	0.32	3E-53		0.31	[0.27-0.35] unit increase	Affymetrix, Illumina [2593456] (imputed)	N
724	chr11	18290357	18290358	rs183978373	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	NR	rs183978373-A	0.065	3E-43	(Serum amyloid A-1 protein, SAA1.4336.2.1)	0.69	[0.59-0.79] unit increase	Affymetrix [10572788] (imputed)	N
724	chr11	18290902	18290903	rs35179000	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	SAA1	rs35179000-C	0.779	1E-771	(Serum amyloid A-1 protein, SAA1.4336.2.1)	1.25	[1.21-1.29] unit decrease	Affymetrix [10572788] (imputed)	N
724	chr11	18291735	18291736	rs11024598	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	11p15.1	intergenic	rs11024598-G	0.4743	8E-6	(Case/control)	0.262	[0.15-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
724	chr11	18291735	18291736	rs11024598	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	11p15.1	intergenic	rs11024598-G	0.4741	9E-6	(Ordinal II)	0.2593	[0.14-0.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
724	chr11	18293504	18293504	rs10690148	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	NR	rs10690148-CAACTT	0.842	6E-625	(Serum amyloid A-1 protein, SAA1.4336.2.1)	1.33	[1.29-1.37] unit decrease	Affymetrix [10572788] (imputed)	N
724	chr11	18297562	18297563	rs2124379	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	11p15.1	intergenic	rs2124379-T	0.423	3E-6	(Ordinal I)	0.2774	[0.16-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
724	chr11	18301128	18301129	rs12416821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p15.1		rs12416821-?	NR	4E-11				NR [~ 8900000] (imputed)	N
724	chr11	18301914	18301915	rs75268115	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p15.1	HPS5	rs75268115-A	0.915301	1E-8		0.0204249	[0.013-0.027] unit increase	Affymetrix [NR] (imputed)	N
724	chr11	18306398	18306399	rs11024603	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	11p15.1	HPS5	rs11024603-A	0.228	9E-6		0.129	[NR] unit increase	Illumina [625127]	N
724	chr11	18306398	18306399	rs11024603	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	504 European ancestry high cardiovascular risk non-diabetic elderly individuals	NA	11p15.1	HPS5	rs11024603-A	0.228	2E-6		0.184	[NR] unit increase	Illumina [625127]	N
724	chr11	18313736	18313737	rs2124373	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs2124373-?	NR	7E-9				Affymetrix [NR]	N
724	chr11	18323315	18323316	rs10766469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p15.1		rs10766469-C	NR	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
724	chr11	18323516	18323517	rs4353250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p15.1	NR	rs4353250-C	NR	2E-14		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr11	18323516	18323517	rs4353250	21124955	Marzi C	2010-11-18	PLoS Genet	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian (founder/genetic isolate) individuals	2,136 European ancestry individuals	11p15.1	HPS5, GTF2H1	rs4353250-T	0.35	2E-51		0.27	[0.23-0.31] unit increase	Affymetrix, Illumina [2593456] (imputed)	N
724	chr11	18325145	18325146	rs2403254	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11p15.1	HPS5	rs2403254-T	0.55	1E-30	(alpha-hydroxyisovalerate)	0.041	[0.033-0.049] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
724	chr11	18325145	18325146	rs2403254	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11p15.1	GTF2H1, HPS5	rs2403254-?	NR	3E-16	(alphahydroxyisovalerate)	0.05239	[NR] unit decrease	Affymetrix [655658]	N
724	chr11	18325145	18325146	rs2403254	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	11p15.1	HPS5	rs2403254-T	0.525	1E-20	(alpha-hydroxyisovalerate + 6 other traits)	0.105	[NR] unit decrease	Affymetrix, Illumina [534665]	N
724	chr11	18327323	18327324	rs11024616	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.1	SAA1	rs11024616-G	0.89046875	8E-248	(SAA1, 4336_2_1)	1.2253178	[1.16-1.29] unit decrease	Illumina [> 1000000] (imputed)	N
724	chr11	18338735	18338736	rs10766470	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p15.1		rs10766470-G	0.44	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
725	chr11	18355123	18355124	rs551959263	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SAA1	5,368 Icelandic ancestry individuals	NA	11p15.1		rs551959263-C	0.01158	8E-59		1.42211	[1.25-1.59] unit increase	Illumina [7506463] (imputed)	N
725	chr11	18357179	18357180	rs4150579	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p15.1	HPS5	rs4150579-A	NR	9E-6		1.34	[1.18-1.53]	NR [7738399] (imputed)	N
725	chr11	18357179	18357180	rs4150579	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p15.1	HPS5, GTF2H1	rs4150579-A	0.3515547	5E-33	(Serum amyloid A-1 protein)	0.5332	[0.45-0.62] unit increase	Affymetrix [509946]	N
725	chr11	18357269	18357270	rs4150581	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	11p15.1	HPS5	rs4150581-A	0.45	2E-37	(3-(4-hydroxyphenyl)lactate/alpha-hydroxyisovalerate)	0.043	[0.037-0.049] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
725	chr11	18362381	18362382	rs77885959	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11p15.1	GTF2H1	rs77885959-T	0.978	3E-17		1.694	[1.57-1.82]	Illumina [11270530] (imputed)	N
725	chr11	18367129	18367130	rs10766471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.1		rs10766471-?	NR	8E-8				NR [~ 8900000] (imputed)	N
725	chr11	18370897	18370898	rs4150642	21124955	Marzi C	2010-11-18	PLoS Genet	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian (founder/genetic isolate) individuals	2,136 European ancestry individuals	11p15.1	HPS5, GTF2H1, LDHA, LDHC	rs4150642-G	0.2	3E-111		0.358	[0.26-0.46] unit increase	Affymetrix, Illumina [2593456] (imputed)	N
725	chr11	18381774	18381775	rs34554228	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p15.1	GTF2H1	rs34554228-AT	0.546617	9E-12	(2-hydroxy-3-methylvalerate)	0.157	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
725	chr11	18381774	18381775	rs34554228	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p15.1	GTF2H1	rs34554228-AT	0.546617	6E-40	(alpha-hydroxyisovalerate)	0.301	[0.26-0.35] unit increase	Illumina [13039987] (imputed)	N
725	chr11	18384937	18384938	rs9783347	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	11p15.1	GTF2H1	rs9783347-A	0.30	9E-6		1.36	[1.19-1.56]	Illumina [2731086] (imputed)	N
725	chr11	18393844	18393845	rs4757645	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p15.1	GTF2H1	rs4757645-C	NR	5E-6		1.42	[1.22-1.65]	NR [7738399] (imputed)	N
725	chr11	18394620	18394621	rs7950283	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	11p15.1	NR	rs7950283-T	0.38	2E-6		1.1	[1.06-1.14]	Illumina [8468885] (imputed)	N
725	chr11	18398957	18398958	rs7925445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	11p15.1		rs7925445-A	0.443846	7E-12		0.0285458	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
725	chr11	18400513	18400514	rs7943847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs7943847-?	NR	1E-13				NR [~ 8900000] (imputed)	N
725	chr11	18405490	18405491	rs11024636	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	11p15.1		rs11024636-C	0.449363	6E-13		0.0296085	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
725	chr11	18419805	18419806	rs2896526	21124955	Marzi C	2010-11-18	PLoS Genet	Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A.	Amyloid A serum levels	3,329 European ancestry individuals, 882 Sorbian (founder/genetic isolate) individuals	2,136 European ancestry individuals	11p15.1	LDHA, LDHC	rs2896526-G	0.17	4E-22		0.221	[0.17-0.27] unit increase	Affymetrix, Illumina [2593456] (imputed)	N
725	chr11	18424406	18424407	rs116841148	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	11p15.1		rs116841148-T	0.0065	3E-11		0.198	unit decrease	Illumina [28300000] (imputed)	N
725	chr11	18425255	18425256	rs34305721	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p15.1	LDHA	rs34305721-G	0.987646	6E-17	(alpha-hydroxyisovalerate)	0.822	[0.63-1.01] unit increase	Illumina [13039987] (imputed)	N
725	chr11	18429990	18429991	rs35292478	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	11p15.1		rs35292478-C	NR	2E-6		1.238		Illumina [up to 7574753] (imputed)	N
725	chr11	18436577	18436578	rs139946387	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRIM1	5,359 Icelandic ancestry individuals	NA	11p15.1		rs139946387-A	0.01255	4E-16		0.682971	[0.52-0.85] unit decrease	Illumina [7506463] (imputed)	N
725	chr11	18451095	18451096	rs3740713	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	11p15.1	LDHC	rs3740713-?		9E-6				Illumina [859311]	N
725	chr11	18470486	18470487	rs16935432	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p15.1	LDHC, LDHAL6A, RP11-613F22.7	rs16935432-A	0.1430723	2E-17	(EA, Serum amyloid A-1 protein)	0.5155	[0.4-0.63] unit increase	Affymetrix [509946]	N
727	chr11	18632983	18632984	rs10128711	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11p15.1	SPTY2D1	rs10128711-?	NR	5E-13		0.0211	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
727	chr11	18632983	18632984	rs10128711	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs10128711-T	NR	2E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18632983	18632984	rs10128711	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs10128711-T	0.265	6E-9	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18632983	18632984	rs10128711	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs10128711-T	NR	2E-9		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18632983	18632984	rs10128711	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs10128711-T	0.265	1E-6	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18632983	18632984	rs10128711	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11p15.1	SPTY2D1	rs10128711-T	0.3	1E-11		0.031	[NR] unit decrease	NR [NR] (imputed)	N
727	chr11	18632983	18632984	rs10128711	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11p15.1	SPTY2D1	rs10128711-T	0.29	3E-8		1.06	[0.63-1.49] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
727	chr11	18638711	18638712	rs10500834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p15.1		rs10500834-T	0.469473	4E-9		0.0118423	[0.0079-0.0158] unit decrease	Illumina [13479295] (imputed)	N
727	chr11	18638711	18638712	rs10500834	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p15.1	NR	rs10500834-A	0.260904	1E-28		0.0241684	[0.02-0.028] unit decrease	Affymetrix [15000001]	N
727	chr11	18638711	18638712	rs10500834	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p15.1	SPTY2D1	rs10500834-?	NR	1E-10		0.01833338	[0.013-0.024] unit decrease	Illumina [27896057] (imputed)	N
727	chr11	18639166	18639167	rs11024735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11p15.1		rs11024735-T	NR	7E-10		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
727	chr11	18639166	18639167	rs11024735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs11024735-C	NR	2E-12		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18639166	18639167	rs11024735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs11024735-C	0.271	8E-10	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18639166	18639167	rs11024735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs11024735-C	NR	2E-10		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18639166	18639167	rs11024735	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p15.1	NR	rs11024735-C	0.271	3E-7	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
727	chr11	18643558	18643559	rs10832954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.1		rs10832954-A	NR	1E-23		0.0138	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
727	chr11	18645667	18645668	rs10832956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11p15.1		rs10832956-C	NR	4E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
727	chr11	18645842	18645843	rs11024739	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11p15.1	NR	rs11024739-A	0.252975403332451	9E-6				NR [9276018] (imputed)	N
727	chr11	18653711	18653712	rs11024743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p15.1		rs11024743-G	NR	8E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
727	chr11	18653711	18653712	rs11024743	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p15.1	SPTY2D1	rs11024743-?		1E-8		0.0203	[0.013-0.027] unit increase	Illumina [31500000] (imputed)	N
727	chr11	18653711	18653712	rs11024743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs11024743-?	NR	1E-33				NR [~ 8900000] (imputed)	N
727	chr11	18653956	18653957	rs10832961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p15.1	NR	rs10832961-G	NR	1E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
727	chr11	18653956	18653957	rs10832961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p15.1	SPTY2D1	rs10832961-G	NR	9E-8				Affymetrix, Illumina [NR] (imputed)	N
727	chr11	18653956	18653957	rs10832961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p15.1	SPTY2D1	rs10832961-G	NR	5E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
727	chr11	18653956	18653957	rs10832961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p15.1	SPTY2D1	rs10832961-G	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
727	chr11	18653956	18653957	rs10832961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p15.1	SPTY2D1	rs10832961-G	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
727	chr11	18656270	18656271	rs10832962	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11p15.1	SPTY2D1	rs10832962-T	0.719	3E-13	(Trans-ethnic initial)	0.0315	[0.024-0.039] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
727	chr11	18664240	18664241	rs10832963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11p15.1	SPTY2D1	rs10832963-T	NR	4E-8		0.0194234	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
727	chr11	18664240	18664241	rs10832963	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p15.1	intergenic	rs10832963-T	0.2555	9E-21		0.0203	[0.016-0.025] unit increase	Affymetrix [18391927] (imputed)	N
727	chr11	18664240	18664241	rs10832963	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11p15.1	SPTY2D1	rs10832963-T	0.255771	4E-13		0.0173852	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
727	chr11	18664240	18664241	rs10832963	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11p15.1	SPTY2D1	rs10832963-T	0.255797	3E-20		0.0220635	[0.017-0.027] unit decrease	Affymetrix [NR] (imputed)	N
727	chr11	18664240	18664241	rs10832963	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p15.1	NR	rs10832963-G	0.7217	9E-6	(EA)	0.0331	[0.019-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
727	chr11	18669127	18669128	rs142398474	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	11p15.1	Intergenic	rs142398474-?	NR	2E-7		0.006	unit increase	Affymetrix [7969123] (imputed)	N
727	chr11	18677810	18677811	rs35024874	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p15.1	NR	rs35024874-?		6E-6				Illumina [4322238] (imputed)	N
727	chr11	18689652	18689653	rs12295403	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	11p15.1	TMEM86A	rs12295403-?		5E-6	(AMH levels- AA)			Affymetrix [677261]	N
727	chr11	18727447	18727448	rs1867877	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		11p15.1	NR	rs1867877-?	0.9489	2E-9	(EA, men)			Illumina [at least 550000] (imputed)	N
727	chr11	18738717	18738718	rs10766496	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	11p15.1	IGSF22	rs10766496-?	0.79	5E-6	(AA, dominant )	1.3333333		Affymetrix [NR]	N
728	chr11	18751040	18751041	rs1550870	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p15.1	NR	rs1550870-T		6E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
728	chr11	18751040	18751041	rs1550870	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p15.1	IGSF22, PTPN5	rs1550870-?		2E-27				Affymetrix, Illumina [NR] (imputed)	N
728	chr11	18751040	18751041	rs1550870	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11p15.1	PTPN5	rs1550870-?	NR	1E-12		1.0526316	[1.04-1.07]	Illumina [13762925] (imputed)	N
728	chr11	18822036	18822037	rs4627050	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	11p15.1	PTPN5	rs4627050-G	0.649	4E-6	(Allelic model)	1.932	[1.452-2.572]	Illumina [733202]	N
730	chr11	19051871	19051872	rs7111562	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.1	NR	rs7111562-C	0.140150397945511	4E-7	(IGP23)	0.2417	[0.15-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
730	chr11	19051871	19051872	rs7111562	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p15.1	NR	rs7111562-C	0.139875874553571	2E-6	(IGP36)	0.2255	[0.13-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
730	chr11	19133450	19133451	rs117931556	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11p15.1	NR	rs117931556-C	0.063	7E-6	(IFNAR2_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
731	chr11	19167849	19167850	rs2271001	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	11p15.1	NR	rs2271001-?		6E-7	(genus_Holdemania)	0.6700049	[0.42-0.92] unit increase	Affymetrix [211319]	N
731	chr11	19175632	19175633	rs11025036	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	11p15.1		rs11025036-A	0.02224	3E-8		0.4567	[0.29-0.62] unit decrease	Illumina [18427348] (imputed)	N
731	chr11	19218770	19218771	rs145571377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4, CSRP3	rs145571377-A	0.071392	5E-12		0.0588412	[0.051-0.067] unit increase	Affymetrix [93095623] (imputed)	N
731	chr11	19221517	19221518	rs77055095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p15.1		rs77055095-A	NR	3E-29		0.0221	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
731	chr11	19221517	19221518	rs77055095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	11p15.1		rs77055095-A	0.340288	5E-9		0.0195036	[0.013-0.026] unit decrease	Illumina [13479135] (imputed)	N
731	chr11	19221517	19221518	rs77055095	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.1		rs77055095-A	NR	2E-10		0.27	[0.19-0.35] unit increase	Illumina [97506867]	N
731	chr11	19221517	19221518	rs77055095	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11p15.1		rs77055095-A	NR	1E-11		0.12	[0.081-0.159] unit increase	Illumina [94681438]	N
731	chr11	19221517	19221518	rs77055095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p15.1	RP11-428C19.4, CSRP3	rs77055095-A	0.228933	1E-28		0.029197043	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.1	RP11-428C19.4, CSRP3	rs77055095-A	0.228966	1E-38		0.034332126	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.252938	2E-49				Affymetrix, Illumina [24332387] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.230713	6E-45		0.030968	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.250283	6E-87				Affymetrix, Illumina [24246363] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.23074	1E-82		0.041703	[0.037-0.046] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.250691	2E-58				Affymetrix, Illumina [20825802] (imputed)	N
731	chr11	19221517	19221518	rs77055095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p15.1	NR	rs77055095-A	0.229731	1E-57		0.036818	[0.032-0.041] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
731	chr11	19221517	19221518	rs77055095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p15.1		rs77055095-?	NR	2E-36				NR [~ 8900000] (imputed)	N
731	chr11	19221517	19221518	rs77055095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.1		rs77055095-?	NR	4E-50				NR [~ 8900000] (imputed)	N
731	chr11	19224091	19224092	rs115595681	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11p15.1	CSRP3	rs115595681-T	NR	7E-6		1.2284	[0.69-1.76] unit increase	Illumina [13520550] (imputed)	N
731	chr11	19224676	19224677	rs10766533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p15.1		rs10766533-A	NR	2E-44		0.03	[0.026-0.034] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
731	chr11	19224676	19224677	rs10766533	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11p15.1		rs10766533-T	0.278	2E-40		0.16	[0.14-0.19] % increase	Affymetrix [NR] (imputed)	N
731	chr11	19224676	19224677	rs10766533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4, CSRP3	rs10766533-A	0.718972	3E-24		0.028925026	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
731	chr11	19224676	19224677	rs10766533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4, CSRP3	rs10766533-A	0.71886	2E-24		0.0394056	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
731	chr11	19224676	19224677	rs10766533	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	11p15.1	RP11-428C19.4	rs10766533-T	0.2892	5E-10		0.2099	[0.14-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
731	chr11	19224676	19224677	rs10766533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11p15.1	CSRP3, RP11-428C19.4	rs10766533-A	0.7204	8E-16		0.03201592	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
731	chr11	19224676	19224677	rs10766533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p15.1	CSRP3, RP11-428C19.4	rs10766533-A	0.7203	9E-20		0.03590253	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
731	chr11	19224676	19224677	rs10766533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p15.1	CSRP3, RP11-428C19.4	rs10766533-A	0.7203	6E-14		0.02969753	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
731	chr11	19228616	19228617	rs11025055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p15.1		rs11025055-A	0.350825	5E-10		0.0233983	[0.016-0.031] unit decrease	Illumina [13476266] (imputed)	N
731	chr11	19237978	19237979	rs11025062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	11p15.1	NR	rs11025062-C	0.657729	7E-10		0.026918	[0.018-0.035] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
731	chr11	19238379	19238380	rs2553974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs2553974-C	0.706192	1E-12		0.017344609	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
731	chr11	19239642	19239643	rs4757774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs4757774-A	0.082319	1E-11		0.031191096	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
731	chr11	19241499	19241500	rs4756992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs4756992-A	0.081129	1E-9		0.02815844	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
731	chr11	19245853	19245854	rs793278	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	11p15.1	NR	rs793278-T	NR	5E-6		2480.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
731	chr11	19246239	19246240	rs150255844	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	11p15.1		rs150255844-?	NR	9E-12		0.522365	[0.37-0.68] unit decrease	NR [9800000] (imputed)	N
731	chr11	19246239	19246240	rs150255844	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	11p15.1		rs150255844-?	NR	6E-17		0.65835	[0.5-0.81] unit increase	NR [9800000] (imputed)	N
731	chr11	19246239	19246240	rs150255844	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	11p15.1		rs150255844-?	NR	2E-20		0.773085	[0.61-0.93] unit increase	NR [9800000] (imputed)	N
731	chr11	19246239	19246240	rs150255844	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	11p15.1		rs150255844-?	NR	3E-31		0.886165	[0.73-1.04] unit increase	NR [9800000] (imputed)	N
731	chr11	19246239	19246240	rs150255844	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	11p15.1		rs150255844-?	NR	1E-26		0.857106	[0.7-1.01] unit increase	NR [9800000] (imputed)	N
731	chr11	19250163	19250164	rs10500844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p15.1		rs10500844-A	NR	1E-36		0.0273	[0.023-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
731	chr11	19250163	19250164	rs10500844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4, E2F8	rs10500844-A	0.711528	2E-24		0.029248148	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr11	19270030	19270031	rs1587704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs1587704-C	0.257788	9E-12		0.017681563	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr11	19272689	19272696	rs144030363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs144030363-A	0.248978	1E-9		0.0221542	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr11	19275216	19275217	rs5790063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p15.1	RP11-428C19.4	rs5790063-T	0.257626	4E-10		0.016132083	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr11	19276916	19276917	rs78596622	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	11p15.1		rs78596622-?	NR	9E-9		1.5519	[1.02-2.08] unit increase	Affymetrix [NR] (imputed)	N
732	chr11	19297339	19297340	rs1502987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p15.1		rs1502987-?	NR	4E-11				NR [~ 8900000] (imputed)	N
732	chr11	19302568	19302569	rs59169624	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11p15.1	NR	rs59169624-?	NR	1E-6		0.00535	[0.0032-0.0075] unit decrease	Affymetrix [9658292] (imputed)	N
732	chr11	19339175	19339176	rs4757788	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs4757788-?	NR	4E-76				Affymetrix [NR]	N
732	chr11	19355479	19355480	rs4756996	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	11p15.1		rs4756996-C	0.23	5E-7		0.19	[0.14-0.31] unit decrease	Illumina [19468843] (imputed)	N
733	chr11	19405491	19405492	rs11025109	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	11p15.1	NR	rs11025109-A	NR	3E-6		2720.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
733	chr11	19422627	19422628	rs10833106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p15.1		rs10833106-?	NR	3E-9				NR [~ 8900000] (imputed)	N
733	chr11	19425233	19425234	rs11025120	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	11p15.1	NR	rs11025120-T	NR	3E-6		3630.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
733	chr11	19445474	19445475	rs10766556	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p15.1		rs10766556-G	0.36	1E-34		12.29	z score increase	Affymetrix [9061022] (imputed)	N
733	chr11	19445474	19445475	rs10766556	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.1		rs10766556-G	0.36	1E-18		8.82	z score increase	Affymetrix [9061022] (imputed)	N
733	chr11	19445474	19445475	rs10766556	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.1		rs10766556-G	0.36	6E-18		8.64	z score increase	Affymetrix [9061022] (imputed)	N
733	chr11	19445474	19445475	rs10766556	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p15.1	NR	rs10766556-G	0.3421	1E-16				NR [9056863] (imputed)	N
733	chr11	19445474	19445475	rs10766556	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.1	NR	rs10766556-G	0.3421	1E-17				NR [9056863] (imputed)	N
733	chr11	19448984	19448985	rs4644624	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11p15.1	NAV2	rs4644624-?	NR	2E-8		0.4055	[0.26-0.55] unit increase	Affymetrix [11100000] (imputed)	N
733	chr11	19451504	19451505	rs10500847	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	11p15.1		rs10500847-T	0.84031	8E-6		0.0160216	[0.0089-0.0231] unit decrease	Illumina [13900000] (imputed)	N
733	chr11	19461652	19461653	rs2702648	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 26)	19,670 European ancestry individuals	NA	11p15.1		rs2702648-?	NR	5E-10				NR [9705931] (imputed)	N
733	chr11	19487770	19487771	rs717015	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	11p15.1	NAV2	rs717015-A	0.3178	5E-6		3.65	[2.08-6.40]	Affymetrix [7675561] (imputed)	N
733	chr11	19507153	19507154	rs13377314	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		NAV2	rs13377314-?	NR	5E-7	(male)	0.547101	[NR] unit decrease	Affymetrix [NR] (imputed)	N
733	chr11	19516571	19516572	rs1032192	29518117	Lee HS	2018-03-08	PLoS One	Nuclear receptor and VEGF pathways for gene-blood lead interactions, on bone mineral density, in Korean smokers.	Bone mineral density x blood lead interaction in current smokers (2df test)	119 Korean ancestry current smokers	NA	11p15.1	NAV2	rs1032192-?		5E-6				Affymetrix [344396]	N
734	chr11	19550199	19550200	rs116608994	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p15.1	NR	rs116608994-T	0.01568	2E-14	(IGHG3)	0.288	NR unit increase	Illumina [1671387] (imputed)	N
734	chr11	19569562	19569563	rs874426	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	11p15.1	intergenic	rs874426-C	NR	4E-6	(earlier onset)			Perlegen [429981]	N
734	chr11	19584501	19584502	rs10500856	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	NAV2	rs10500856-G	0.0090	7E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
734	chr11	19593805	19593806	rs11025185	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	11p15.1	NAV2	rs11025185-A	NR	1E-9		1.15	[NR]	NR [352000]	N
734	chr11	19599970	19599971	rs10741780	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	11p15.1	AC023950.6	rs10741780-?	NR	6E-6				Illumina [990115]	N
734	chr11	19632395	19632396	rs143445068	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Multiple consecutive miscarriage	750 European ancestry cases, 150,215 European ancestry controls	NA	11p15.1	NR	rs143445068-C	0.008	5E-9		3.43	[2.35-5.00]	Affymetrix, Illumina [8956145] (imputed)	N
735	chr11	19663277	19663278	rs4757833	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11p15.1	NR	rs4757833-T	0.9369	3E-6		0.1653	[0.096-0.235] unit decrease	Illumina [up to 1980188] (imputed)	N
735	chr11	19740730	19740731	rs10500859	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	11p15.1	NAV2	rs10500859-?	NR	2E-11		0.041	[0.053-0.029] unit decrease	Illumina [12039491] (imputed)	N
735	chr11	19757219	19757220	rs1820351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p15.1		rs1820351-?	NR	3E-8				NR [~ 8900000] (imputed)	N
735	chr11	19774991	19774992	rs16937173	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	11p15.1	NR	rs16937173-T	0.02	6E-6	(Asian)	0.67	[0.38-0.96] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
735	chr11	19782190	19782191	rs7118473	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	11p15.1	NAV2	rs7118473-T	0.35	7E-6		0.87	NR unit decrease	Illumina [NR] (imputed)	N
736	chr11	19796385	19796386	rs7125626	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11p15.1	MIR4694	rs7125626-A	0.665373	2E-12		0.00411967	[0.003-0.0052] unit decrease	Affymetrix [13995440] (imputed)	N
736	chr11	19813257	19813258	rs10833171	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	DBX1	rs10833171-?	NR	3E-6	(CE 18:3)	0.23002814	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
736	chr11	19823621	19823622	rs7943969	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	DBX1	rs7943969-?	NR	6E-6	(CE 20:4)	0.22358207	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
736	chr11	19844597	19844598	rs146425640	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	11p15.1	NAV2	rs146425640-C	0.017	3E-7	(First-generation cephalosporins [J01DB])	5.34		Illumina [16500000] (imputed)	N
736	chr11	19853178	19853179	rs11025278	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	11p15.1	NR	rs11025278-?		7E-6	(genus_Fusobacterium)	0.658769	[0.39-0.93] unit decrease	Affymetrix [211319]	N
736	chr11	19871229	19871230	rs1838055	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	11p15.1	NR	rs1838055-C	0.1135	1E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
736	chr11	19871904	19871905	rs12361438	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11p15.1		rs12361438-A	0.893	4E-6		0.081	[0.046-0.116] unit decrease	Affymetrix [6030650] (imputed)	N
736	chr11	19903756	19903757	rs2625312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.1	NR	rs2625312-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
736	chr11	19903756	19903757	rs2625312	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p15.1	NR	rs2625312-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
737	chr11	19980231	19980232	rs12799264	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	11p15.1	NAV2	rs12799264-?	0.006849	3E-6		22.89	[NR]	Affymetrix [559609]	N
737	chr11	19984328	19984329	rs78368496	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	11p15.1	NAV2	rs78368496-?		4E-8	(Etanercept)	0.69	[0.44-0.94] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
737	chr11	19988411	19988412	rs2403547	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	11p15.1		rs2403547-A	NR	6E-6		0.79	unit increase	Illumina [474792]	N
737	chr11	19993803	19993804	rs1986254	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	11p15.1		rs1986254-G	NR	8E-6		0.83	unit increase	Illumina [474792]	N
737	chr11	20010350	20010351	rs2625322	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.1	NAV2	rs2625322-G	0.771869	4E-8	(-108 ms)	0.0363274	[0.023-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
737	chr11	20010350	20010351	rs2625322	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.1	NAV2	rs2625322-G	0.771869	2E-8	(-114 ms)	0.0372494	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
737	chr11	20010350	20010351	rs2625322	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.1	NAV2	rs2625322-G	0.771869	2E-8	(-112 ms)	0.0369317	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
737	chr11	20010350	20010351	rs2625322	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p15.1	NAV2	rs2625322-G	0.771869	2E-8	(-110 ms)	0.0368866	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
737	chr11	20010350	20010351	rs2625322	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11p15.1	NAV2	rs2625322-G	0.7726	5E-12		0.5215	[0.37-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
737	chr11	20010350	20010351	rs2625322	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	11p15.1	NAV2	rs2625322-A	0.22	2E-14	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
737	chr11	20010512	20010513	rs1822273	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	11p15.1	NAV2	rs1822273-G	0.27	9E-17		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
737	chr11	20011444	20011445	rs10741807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	11p15.1		rs10741807-C	NR	5E-16		0.0881	[0.067-0.109] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
737	chr11	20011444	20011445	rs10741807	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	11p15.1	NAV2	rs10741807-T	0.245	2E-20		1.08	[1.06-1.09]	Illumina [34740186] (imputed)	N
737	chr11	20015275	20015276	rs1372797	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	11p15.1	NAV2	rs1372797-T	0.12	2E-9		1.1	[0.75-1.45] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
737	chr11	20022526	20022527	rs11602997	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			NAV2	rs11602997-A	0.07609	2E-11		0.106126	[0.075-0.137] unit decrease	Affymetrix [8165723] (imputed)	N
737	chr11	20031864	20031865	rs11605275	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p15.1	NR	rs11605275-?	NR	9E-6	(AA)	6.16	[4.89-7.43]	Illumina [905956]	N
737	chr11	20036281	20036282	rs150833177	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	11p15.1		rs150833177-T	0.913809	4E-6		0.0141105	[0.005-0.0233] unit decrease	Illumina [7666802] (imputed)	N
738	chr11	20057157	20057158	rs4757882	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p15.1	NR	rs4757882-?	NR	3E-6	(AA)	6.53	[5.47-7.59]	Illumina [905956]	N
738	chr11	20057390	20057391	rs150478906	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p15.1	NR	rs150478906-?	NR	2E-7		0.4384	[0.27-0.6] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
738	chr11	20102439	20102440	rs7119635	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p15.1	NAV2	rs7119635-T	0.4098	9E-6		0.0325	[0.018-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
738	chr11	20102439	20102440	rs7119635	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p15.1	NAV2	rs7119635-T	0.4098	9E-6		0.0325	[0.018-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
738	chr11	20129310	20129311	rs35891966	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p15.1		rs35891966-A	0.07	3E-16		8.2	z score increase	Affymetrix [9061022] (imputed)	N
738	chr11	20129310	20129311	rs35891966	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p15.1		rs35891966-A	0.07	5E-26		10.55	z score increase	Affymetrix [9061022] (imputed)	N
738	chr11	20129310	20129311	rs35891966	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p15.1	NR	rs35891966-A	0.0748	7E-16				NR [9056863] (imputed)	N
738	chr11	20129310	20129311	rs35891966	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p15.1	NR	rs35891966-A	0.0748	1E-17				NR [9056863] (imputed)	N
738	chr11	20129310	20129311	rs35891966	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	11p15.1	ATP1B3, TFDP2	rs35891966-?		4E-9				NR [7428630] (imputed)	N
738	chr11	20129310	20129311	rs35891966	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p15.1	NAV2	rs35891966-?		1E-14				NR [7428630] (imputed)	N
738	chr11	20129310	20129311	rs35891966	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11p15.1	NAV2	rs35891966-A	0.0719	1E-8		0.0237	[0.016-0.032] unit decrease	Illumina [~ 250000] (imputed)	N
738	chr11	20129310	20129311	rs35891966	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11p15.1	NAV2	rs35891966-A	0.07	1E-8		0.024	[0.016-0.032] unit decrease	Illumina [~ 250000] (imputed)	N
738	chr11	20129310	20129311	rs35891966	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p15.1	DBX1	rs35891966-A	0.0722	7E-9		0.024323925	[0.016-0.033] unit decrease	Affymetrix [11514654] (imputed)	N
738	chr11	20129310	20129311	rs35891966	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p15.1	NR	rs35891966-A	0.069	5E-10		0.0149029	[0.01-0.02] unit decrease	NR [9732723] (imputed)	N
738	chr11	20129310	20129311	rs35891966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p15.1		rs35891966-?	NR	2E-8				NR [~ 8900000] (imputed)	N
738	chr11	20129310	20129311	rs35891966	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p15.1	NR	rs35891966-?	NR	2E-6		0.0081298	[0.0048-0.0115] unit increase	Affymetrix [805426] (imputed)	N
738	chr11	20129310	20129311	rs35891966	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p15.1	NAV2	rs35891966-A	NR	1E-8		5.69	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
739	chr11	20215755	20215756	rs10500871	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	11p15.1	intergenic	rs10500871-T	0.322	3E-6		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
739	chr11	20219345	20219346	rs35081743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p15.1		rs35081743-?	NR	5E-13				NR [~ 8900000] (imputed)	N
739	chr11	20222718	20222719	rs11606812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p15.1		rs11606812-T	NR	3E-8		0.0081	[0.0052-0.011] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
739	chr11	20230145	20230146	rs9943579	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11p15.1	DBX1	rs9943579-G	NR	7E-6		0.02696	[0.015-0.039] unit decrease	Illumina [NR] (imputed)	N
739	chr11	20240583	20240584	rs7129826	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	11p15.1	DBX1	rs7129826-?		3E-8				Illumina [563980]	N
739	chr11	20253598	20253599	rs1353649	25601762	Wang Y	2015-01-20	Pharmacogenomics J	Pharmacodynamic genome-wide association study identifies new responsive loci for glucocorticoid intervention in asthma.	Response to inhaled glucocorticoid treatment in asthma (change in FEV1)	120 individuals	410 individuals	11p15.1	DBX1, NAV2, HTATIP2, PRMT3	rs1353649-?		6E-11				Affymetrix [266944]	N
739	chr11	20266390	20266391	rs7119037	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	11p15.1	NR	rs7119037-?	NR	5E-7	(alphaOcc)	5.034	z score decrease	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
739	chr11	20269389	20269390	rs1520896	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	11p15.1	intergenic	rs1520896-?		1E-6				NR [~ 3000000] (imputed)	N
739	chr11	20274874	20274875	rs56218978	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	11p15.1	NR	rs56218978-A	0.00917	5E-6		0.725	[0.41-1.04] unit decrease	Illumina [10677593] (imputed)	N
740	chr11	20356357	20356357	rs397975556	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	11p15.1	intergenic	rs397975556-C	0.3487	1E-7		0.4641	[0.29-0.63] unit increase	Illumina [at least 4683137] (imputed)	N
740	chr11	20356443	20356444	rs7128099	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	HTATIP2	rs7128099-G	0.335	3E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
740	chr11	20359962	20359963	rs74518511	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	11p15.1		rs74518511-T	0.017275	9E-7		2.3485205	NR	Affymetrix [7846216] (imputed)	N
740	chr11	20370205	20370206	rs11025521	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Fractional shortening	19,580 Japanese ancestry individuals	NA	11p15.1	DBX1, HTATIP2	rs11025521-?	NR	4E-8		0.05602	[0.036-0.076] unit decrease	Illumina [6108953] (imputed)	N
740	chr11	20378123	20378124	rs11025523	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	HTATIP2	rs11025523-A	0.091	7E-6	(Sedentary&light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
740	chr11	20381940	20381941	rs9630158	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	11p15.1	HTATIP2	rs9630158-G	0.1172	8E-6		0.85753	NR	Affymetrix, Illumina [30341632] (imputed)	N
740	chr11	20432046	20432046	rs10647170	31270906	Lai D	2019-07-03	Addict Biol	Genome-wide association studies of the self-rating of effects of ethanol (SRE).	Number of alcoholic drinks required to feel an effect (long-term average)	4,723 European ancestry individuals from 956 families, 1,527 African American individuals from 309 families	306 European ancestry individuals, 169 African American individuals	11p15.1	PRMT3	rs10647170-T	0.96	6E-10		0.1396	[0.093-0.186] unit decrease	Illumina [up to 15464468] (imputed)	N
740	chr11	20432891	20432892	rs6416028	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	11p15.1		rs6416028-?	NR	7E-6		1.52584	[1.34-1.71]	NR [663102]	N
740	chr11	20440690	20440691	rs12362967	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	11p15.1	NR	rs12362967-?	NR	9E-8			[NR]	Illumina [5432814] (imputed)	N
740	chr11	20443874	20443875	rs11025559	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11p15.1	PRMT3	rs11025559-A	0.2034	8E-6	(African)			Illumina [4404269] (imputed)	N
741	chr11	20513724	20513725	rs80315173	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p15.1	NR	rs80315173-?	NR	4E-7	(Japanese)	0.6257	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
741	chr11	20543636	20543637	rs10833346	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	11p15.1		rs10833346-A	0.178	2E-6		0.83	[0.77-0.9]	Illumina [7199488] (imputed)	N
741	chr11	20554789	20554790	rs11025608	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (maximum)	22,179 British ancestry individuals	NA	11p15.1	PRMT3, SLC6A5	rs11025608-G	0.44	3E-8		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
741	chr11	20561009	20561010	rs73443003	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	11p15.1	Intergenic	rs73443003-C	0.75	1E-7	(AA)			Illumina [NR] (imputed)	N
741	chr11	20562518	20562519	rs7128311	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	11p15.1	intergenic	rs7128311-C	NR	5E-6		13.9	[2.72-71.1]	Affymetrix [476796]	N
742	chr11	20607477	20607478	rs11025640	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p15.1	NR	rs11025640-?	NR	8E-9				Illumina [7760689] (imputed)	N
742	chr11	20623022	20623023	rs2241941	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	SLC6A5	rs2241941-A	0.339	8E-6	(Methionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
742	chr11	20675141	20675142	rs77394600	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	11p15.1	SLC6A5	rs77394600-?	NR	8E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
742	chr11	20684039	20684040	rs2139424	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	11p15.1	intergenic	rs2139424-?		7E-6				Affymetrix, Illumina [1348798]	N
742	chr11	20692207	20692208	rs2282661	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	SLC6A5	rs2282661-?	NR	4E-6	(ornithine)	0.3491206	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
742	chr11	20698928	20698929	rs1793004	17684544	Franke A	2007-08-08	PLoS One	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	11p15.1	NELL1	rs1793004-?	0.27	3E-6		1.3	[1.12-1.52]	Affymetrix [92387]	N
743	chr11	20781003	20781004	rs752088	24847101	Rudkowska I	2014-05-19	J Lipid Res	Genome-wide association study of the plasma triglyceride response to an n-3 polyunsaturated fatty acid supplementation.	Response to long-chain n-3 polyunsaturated fatty acid supplementation (change in triglyceride levels)	81 responder individuals, 60 non-responder individuals	NA	11p15.1	NELL1	rs752088-G	0.27	4E-6		3.23		Illumina [2668805]	N
744	chr11	20841969	20841970	rs1519744	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	SLC6A5	rs1519744-?	NR	8E-6	(symmetric dimethylarginine)	0.9983254	[0.56-1.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
744	chr11	20906051	20906052	rs16906991	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs16906991-?	NR	1E-11				Affymetrix [NR]	N
744	chr11	20906639	20906640	rs186464019	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	11p15.1		rs186464019-C	0.011649	3E-7		2.478751	NR	Affymetrix [7846216] (imputed)	N
744	chr11	20921447	20921447	rs35088485	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NELL1	rs35088485-?	NR	7E-9	(female)	1.59044	[NR] unit decrease	Affymetrix [NR] (imputed)	N
744	chr11	20952236	20952237	rs16907058	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p15.1	NR	rs16907058-G	0.941	5E-8		0.0461	[0.03-0.063] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
744	chr11	20952236	20952237	rs16907058	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.1	NR	rs16907058-G	0.94890625	9E-79	(FAM189A2, 5699_19_3)	1.0087626	[0.91-1.11] unit decrease	Illumina [> 1000000] (imputed)	N
744	chr11	20952236	20952237	rs16907058	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p15.1	NR	rs16907058-G	0.94890625	2E-75	(NELL1, 6544_33_3)	0.9886538	[0.89-1.09] unit decrease	Illumina [> 1000000] (imputed)	N
744	chr11	20953617	20953618	rs10741859	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p15.1	Intergenic	rs10741859-T	0.7361	1E-8	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
744	chr11	20955269	20955270	rs61652119	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	NELL1	rs61652119-A	0.049	1E-89	(Protein kinase C-binding protein NELL1, NELL1.6544.33.3)	1.11	[0.99-1.23] unit increase	Affymetrix [10572788] (imputed)	N
744	chr11	20959184	20959185	rs1880088	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p15.1		rs1880088-A	0.2618	1E-9		0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
744	chr11	20959393	20959394	rs8176786	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NELL1	5,364 Icelandic ancestry individuals	NA	11p15.1		rs8176786-T	0.05454	2E-115		0.896424	[0.82-0.97] unit increase	Illumina [7506463] (imputed)	N
744	chr11	20959393	20959394	rs8176786	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM189A2	5,367 Icelandic ancestry individuals	NA	11p15.1		rs8176786-T	0.05454	4E-122		0.927531	[0.85-1] unit increase	Illumina [7506463] (imputed)	N
744	chr11	20959393	20959394	rs8176786	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p15.1	NELL1	rs8176786-T	0.049	7E-49	(Protein FAM189A2, FAM189A2.5699.19.3)	0.84	[0.72-0.96] unit increase	Affymetrix [10572788] (imputed)	N
744	chr11	20961874	20961875	rs142207117	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11p15.1	Intergenic	rs142207117-?		3E-6		1.0526316	[1.03-1.08]	Illumina [7645193] (imputed)	N
745	chr11	20984204	20984205	rs61883261	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	11p15.1	NELL1	rs61883261-?	NR	9E-6	(SF2)			Affymetrix [5476100] (imputed)	N
745	chr11	21030703	21030704	rs1516773	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs1516773-?	NR	2E-15				Affymetrix [NR]	N
745	chr11	21046426	21046427	rs35295995	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p15.1	NR	rs35295995-?	NR	5E-6	(Native Hawaiian)	0.8108	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
745	chr11	21058730	21058731	rs4569005	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	11p15.1	NELL1	rs4569005-?	NR	5E-6	(Total LTG and PHT)			Illumina [NR]	N
745	chr11	21094537	21094538	rs72948166	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM189A2	5,367 Icelandic ancestry individuals	NA	11p15.1		rs72948166-G	0.01273	7E-13		0.605745	[0.44-0.77] unit decrease	Illumina [7506463] (imputed)	N
746	chr11	21121958	21121959	rs11025915	29266176	Inaba H	2017-12-19	Cancer	Bone mineral density in children with acute lymphoblastic leukemia.	Bone mineral density change response to combined chemotherapy in acute lymphoblastic leukemia	235 European ancestry cases, 48 African American ancestry cases, 13 cases	NA	11p15.1	NELL1	rs11025915-A	0.025	4E-6		1.306	z score decrease	Affymetrix [448281]	N
746	chr11	21170358	21170359	rs1453995	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	11p15.1	NELL1	rs1453995-C	0.37878485639686676	9E-6	(AA)	0.3565	[0.2-0.51] unit decrease	Illumina [at least 988306] (imputed)	N
747	chr11	21247590	21247591	rs10833478	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	11p15.1	NELL1	rs10833478-G	0.71	4E-7		0.45	NR unit decrease	Affymetrix [352228] (imputed)	N
747	chr11	21314145	21314146	rs111629393	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		11p15.1	NR	rs111629393-G	0.329171	8E-6		1.123	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
747	chr11	21347999	21348000	rs12289793	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	11p15.1	NELL1	rs12289793-A	0.7927	7E-7	(Subset)	0.142	[0.086-0.198] unit increase	Illumina [up to 38043574] (imputed)	N
747	chr11	21347999	21348000	rs12289793	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	11p15.1	NELL1	rs12289793-A	0.79	1E-6	(Subset)	0.14	[0.081-0.199] unit increase	Illumina [up to 38043574] (imputed)	N
748	chr11	21393858	21393859	rs7120820	25551457	Baumert J	2014-12-31	PLoS One	No evidence for genome-wide interactions on plasma fibrinogen by smoking, alcohol consumption and body mass index: results from meta-analyses of 80,607 subjects.	Fibrinogen levels (smoking status, alcohol consumption or body mass index interaction)	up to 80,607 European ancestry individuals	NA	11p15.1	NELL1	rs7120820-T	0.376	2E-6	(BMI)	0.004	[-0.01364-0.02164] g/L increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
748	chr11	21439475	21439476	rs10833529	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	11p15.1	NELL1	rs10833529-?		3E-6				Illumina [2668805]	N
748	chr11	21472502	21472503	rs148586747	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	11p15.1	NR	rs148586747-A	0.027409	7E-7		0.2729256	[0.17-0.38] unit decrease	Illumina [9469131] (imputed)	N
749	chr11	21501694	21501695	rs10766821	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	TMEM16E	rs10766821-?	NR	6E-7	(PC 36:2)	0.17347188	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
749	chr11	21504899	21504900	rs73469144	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p15.1	NR	rs73469144-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
749	chr11	21515582	21515583	rs7116826	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs7116826-?	NR	4E-6				Affymetrix [NR]	N
749	chr11	21520401	21520402	rs10741881	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p15.1	NR	rs10741881-?	NR	3E-7				Affymetrix [NR]	N
749	chr11	21565078	21565079	rs12279250	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	11p15.1	NELL-1	rs12279250-C	0.15	7E-9	(AA-triglyceride response)	28.2	[18.67-37.73] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
749	chr11	21601886	21601890	rs151204774	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11p15.1	NELL1	rs151204774-G	0.0529	7E-7		0.0809	[0.049-0.113] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
749	chr11	21605150	21605151	rs10500910	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	TMEM16E	rs10500910-?	NR	6E-6	(thiamine)	0.8010817	[0.45-1.15] unit increase	Affymetrix [at least 2500000] (imputed)	N
749	chr11	21620947	21620948	rs1573535	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	11p15.1	NELL1	rs1573535-A	0.56	4E-6		0.026	unit increase	Illumina [~ 2400000] (imputed)	N
750	chr11	21649149	21649150	rs75715012	27601451	Sanders AE	2016-09-06	J Dent Res	Chronic Periodontitis Genome-wide Association Study in the Hispanic Community Health Study / Study of Latinos.	Chronic periodontitis (mean interproximal clinical attachment level)	10,935 Hispanic individuals	4,402 European ancestry individuals, 908 African American individuals	11p15.1	NELL1	rs75715012-A	0.089	1E-7	(Hispanics)	0.045	[0.029-0.061] unit increase	Illumina [~ 20000000] (imputed)	N
750	chr11	21669292	21669293	rs10833583	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	NELL1	rs10833583-A	0.061	7E-6	(IGFBP-1 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
750	chr11	21677341	21677342	rs2051457	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p15.1	NELL1	rs2051457-A	0.096	5E-6	(Sleep duration )	0.03	[NR] min/d increase	Illumina [899892]	N
750	chr11	21708586	21708587	rs34402840	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p15.1	NR	rs34402840-?	NR	9E-7	(AA)	1.5785	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
750	chr11	21708586	21708587	rs34402840	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p15.1	NR	rs34402840-?	NR	9E-8	(AA)	1.5485	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
751	chr11	21866460	21866461	rs12420752	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11p15.1	NR	rs12420752-?	NR	1E-7	(Nectin-like protein 1)	0.31	[0.19-0.43] unit increase	Illumina [4020654] (imputed)	N
751	chr11	21866592	21866593	rs7125847	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p15.1	TMEM16E	rs7125847-?	NR	2E-6	(glycerol)	0.7405464	[0.43-1.05] unit decrease	Affymetrix [at least 2500000] (imputed)	N
751	chr11	21874252	21874253	rs7122488	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	11p15.1	NELL1	rs7122488-T	0.238	7E-6	(IIV)	0.2	[0.1-0.3] unit decrease	Illumina [799713]	N
751	chr11	21882857	21882858	rs4617585	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	11p15.1	ANO5	rs4617585-?	NR	9E-6				Illumina [540916] (imputed)	N
752	chr11	21894813	21894814	rs4922945	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p15.1	NR	rs4922945-A	0.303	3E-7		0.00604187	[0.0037-0.0083] unit decrease	NR [9732723] (imputed)	N
752	chr11	21896879	21896880	rs11026318	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11p15.1	NR	rs11026318-A	0.07	9E-6	(Non-HD without IgH translocations vs. controls)	2.33	[1.60-3.38]	Illumina [414804]	N
752	chr11	21956957	21956958	rs111561475	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p15.1	NR	rs111561475-?	NR	2E-6	(AA)	1.3324	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
753	chr11	22034868	22034869	rs1379650	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	Pruritus in nonalcoholic steatohepatitis	approximately 31 European ancestry cases, approximately 166 European ancestry controls	NA	11p14.3	ANO5	rs1379650-?	NR	2E-6		6.94	NR	Illumina [5417859] (imputed)	N
753	chr11	22105029	22105030	rs11026407	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Plasma thyroid-stimulating hormone levels	2,789 Korean ancestry individuals	829 Korean ancestry individuals	11p14.3	ANO5	rs11026407-C	0.26	2E-8		0.125	[0.074-0.176] uIU/L decrease	Affymetrix [1418709] (imputed)	N
753	chr11	22114092	22114093	rs11026412	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	11p14.3	intergenic	rs11026412-?	NR	3E-6		1.16	[NR]	Illumina [2500000] (imputed)	N
754	chr11	22205425	22205426	rs7938061	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	11p14.3		rs7938061-?	NR	1E-9		6.06	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
754	chr11	22205425	22205426	rs7938061	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	11p14.3		rs7938061-?	NR	4E-7		0.06	[0.038-0.082] unit increase	Affymetrix, Illumina [NR] (imputed)	N
754	chr11	22205425	22205426	rs7938061	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	11p14.3		rs7938061-?	NR	1E-9		6.06	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
754	chr11	22219380	22219381	rs61880868	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11p14.3	NR	rs61880868-?	NR	5E-6		2740.58	NR unit decrease	Illumina [2379855]	N
754	chr11	22221783	22221784	rs10741929	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myoglobin levels	21,758 European ancestry individuals	9,173 individuals	11p14.3		rs10741929-A	0.33	2E-18		0.0783	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
754	chr11	22237364	22237365	rs4922982	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	11p14.3		rs4922982-?	NR	9E-7		0.04	[0.022-0.058] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
754	chr11	22242653	22242653	rs137854521	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	11p14.3		rs137854521-?	NR	9E-27		0.1991	[0.16-0.24] unit increase	NR [9800000] (imputed)	N
754	chr11	22242653	22242653	rs137854521	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	11p14.3		rs137854521-?	NR	3E-14		0.148791	[0.11-0.19] unit increase	NR [9800000] (imputed)	N
754	chr11	22255485	22255486	rs12574283	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	11p14.3	ANO5	rs12574283-?	NR	9E-31		0.0031	[0.0025-0.0037] unit decrease	Affymetrix [21347608] (imputed)	N
754	chr11	22255485	22255486	rs12574283	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	11p14.3	ANO5	rs12574283-?	NR	3E-12		0.003	[0.002-0.004] unit decrease	Affymetrix [21347608] (imputed)	N
754	chr11	22271869	22271870	rs7481951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p14.3		rs7481951-T	NR	1E-33		0.0257	[0.022-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
754	chr11	22271869	22271870	rs7481951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11p14.3		rs7481951-T	NR	4E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
754	chr11	22271869	22271870	rs7481951	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11p14.3	ANO5	rs7481951-A	0.412902	6E-14		0.00293282	[0.0022-0.0037] unit decrease	Affymetrix [13995440] (imputed)	N
754	chr11	22271869	22271870	rs7481951	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	11p14.3		rs7481951-T	0.5911	3E-19		0.05	[0.03-0.07] unit increase	Illumina [26711992] (imputed)	N
754	chr11	22271869	22271870	rs7481951	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p14.3	ANO5	rs7481951-T	0.59	8E-26		10.5	z-score increase	Affymetrix [4314223] (imputed)	N
754	chr11	22271869	22271870	rs7481951	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11p14.3	ANO5	rs7481951-T	0.59	5E-10		6.22	z-score increase	Affymetrix [4312306] (imputed)	N
754	chr11	22271869	22271870	rs7481951	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	11p14.3	ANO5	rs7481951-T		6E-10		0.055	[NR] unit increase	Illumina [24111857] (imputed)	N
754	chr11	22271869	22271870	rs7481951	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	11p14.3		rs7481951-A	0.3745	6E-16		0.047	unit decrease	Illumina [28300000] (imputed)	N
755	chr11	22296265	22296266	rs61910685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p14.3	NR	rs61910685-T	NR	2E-14		0.0859	[0.064-0.108] unit increase	Affymetrix [9000000] (imputed)	N
755	chr11	22299076	22299077	rs10766929	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	11p14.3		rs10766929-?	NR	2E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
755	chr11	22312565	22312566	rs11827962	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	11p14.3	ANO5, SLC17A6	rs11827962-C	NR	6E-6	(5 degree of freedom test)	1.044	[0.94-1.15]	NR [1252901] (imputed)	N
755	chr11	22362295	22362296	rs1447514	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	11p14.3		rs1447514-?	NR	5E-6	(MLM)	0.2921513	[0.17-0.42] unit increase	Illumina [~ 9000000] (imputed)	N
755	chr11	22367285	22367286	rs1562445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.3		rs1562445-?	NR	4E-8				NR [~ 8900000] (imputed)	N
756	chr11	22431627	22431628	rs116472587	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p14.3	NR	rs116472587-A	0.01045	3E-8	(BPNT1)	0.04978	NR unit increase	Illumina [1671387] (imputed)	N
756	chr11	22495329	22495330	rs11026578	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11p14.3	CTD-2140G10.1	rs11026578-T	0.0656016	4E-8		0.09160002	[0.059-0.124] unit increase	Affymetrix [7288503] (imputed)	N
756	chr11	22504213	22504214	rs188867939	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p14.3	Intergenic	rs188867939-G	0.995	3E-6	(AA)	0.159	unit increase	Illumina [NR] (imputed)	N
756	chr11	22515503	22515504	rs11026585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p14.3		rs11026585-A	NR	3E-9		0.0277	[0.018-0.037] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
756	chr11	22515503	22515504	rs11026585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.3		rs11026585-?	NR	7E-12				NR [~ 8900000] (imputed)	N
756	chr11	22515532	22515533	rs11026586	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p14.3	RP11-34N19.1	rs11026586-A	0.0726	3E-18		0.2606	[0.2-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
756	chr11	22525353	22525354	rs1514092	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p14.3	NR	rs1514092-?	NR	3E-7		0.264	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
756	chr11	22538226	22538227	rs10766948	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p14.3	NR	rs10766948-G	0.714	6E-9		0.00697114	[0.0046-0.0093] unit decrease	NR [9732723] (imputed)	N
757	chr11	22583067	22583068	rs55971529	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	11p14.3	FANCF	rs55971529-A	0.97	4E-6		1.08	[0.63-1.53] unit decrease	Illumina [12910578] (imputed)	N
758	chr11	22782754	22782755	rs11026774	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p14.3	NR	rs11026774-?	NR	2E-6		4.709	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
759	chr11	22817514	22817515	rs76895713	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p14.3	GAS2	rs76895713-A	0.0100872295024371	4E-6	(G_unclassified_P_Firmicutes_HB)	1.66535	[0.95-2.38] unit decrease	Illumina [7711310] (imputed)	N
759	chr11	22829756	22829757	rs7111546	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	11p14.3	GAS2	rs7111546-?	0.44	2E-6		1.72	[1.37-2.16]	Affymetrix [832357]	N
759	chr11	22843154	22843155	rs712022	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	11p14.3	SVIP	rs712022-?	0.53	6E-6		1.61	[1.32-1.96]	Affymetrix [832357]	N
759	chr11	22898976	22898977	rs12364177	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11p14.3	NR	rs12364177-A	0.9552	1E-6	(Total trans-18:1, EA)	0.176	[0.1-0.25] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
760	chr11	22980474	22980475	rs2470315	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	11p14.3		rs2470315-?	NR	2E-6		3.2383354		Affymetrix [710007]	N
760	chr11	23044591	23044592	rs10833905	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	11p14.3	intergenic	rs10833905-?	0.22	7E-7	(Recessive)	1.32	[1.18-1.47]	Affymetrix [319222]	N
760	chr11	23061290	23061291	rs10833917	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.3	GAS2	rs10833917-?	NR	9E-6	(CE 14:0)	0.15270796	[0.085-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
761	chr11	23134025	23134025	rs35833321	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	11p14.3	NR	rs35833321-TC		4E-6		0.2031	[0.12-0.29] SD units decrease	NR [10700000] (imputed)	N
761	chr11	23171684	23171685	rs10767013	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	11p14.3	MIR8054, CCDC179	rs10767013-G	0.49	7E-7		0.362	[0.22-0.51] unit increase	Illumina [6007542] (imputed)	N
763	chr11	23347264	23347265	rs193145729	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	11p14.3	MIR8054	rs193145729-G	0.89	5E-7		0.538	[0.33-0.75] unit increase	Illumina [6007542] (imputed)	N
763	chr11	23382360	23382361	rs147831109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p14.3	Intergenic	rs147831109-T	0.998	4E-6	(AA)	1.013	NR unit increase	Illumina [NR] (imputed)	N
763	chr11	23434934	23434935	rs187478995	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p14.3	Intergenic	rs187478995-T	0.998	2E-6	(AA)	0.948	NR unit increase	Illumina [NR] (imputed)	N
764	chr11	23502917	23502918	rs1466413	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p14.3	NR	rs1466413-G	0.01045	3E-9	(MGMT)	0.01497	NR unit increase	Illumina [1671387] (imputed)	N
764	chr11	23509084	23509085	rs148697259	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	11p14.3	NR	rs148697259-A	0.0181	9E-6		133.0	[75-192] unit increase	NR [9714326] (imputed)	N
764	chr11	23513735	23513736	rs1462546	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	11p14.3		rs1462546-?	NR	2E-6		1.297	[1.166-1.443]	Affymetrix [7975321] (imputed)	N
764	chr11	23552452	23552453	rs11027293	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	11p14.3	SVIP	rs11027293-?	NR	7E-7	(Latino)	3.38	[2.90-3.86]	Affymetrix, Illumina [NR] (imputed)	N
764	chr11	23552452	23552453	rs11027293	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	11p14.3	SVIP	rs11027293-?	NR	7E-6		2.1	[1.52-2.91]	Affymetrix, Illumina [NR] (imputed)	N
765	chr11	23658029	23658030	rs56772770	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p14.3	NR	rs56772770-A	0.01394	4E-12	(LRG1)	0.07994	NR unit increase	Illumina [1671387] (imputed)	N
765	chr11	23692426	23692427	rs117285774	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p14.3	NR	rs117285774-?	NR	6E-6	(Native Hawaiian)	1.5042	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
766	chr11	23786415	23786416	rs76217325	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	11p14.3	NR	rs76217325-A		5E-6		0.5628	[0.32-0.8] unit increase	Illumina [NR] (imputed)	N
766	chr11	23804647	23804648	rs143569928	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	11p14.3	NR	rs143569928-T	0.01146	2E-6		0.6715	[0.39-0.95] unit decrease	Illumina [10677593] (imputed)	N
767	chr11	23883247	23883248	rs7123421	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	11p14.3	NR	rs7123421-C	0.0354136	7E-6		1.139	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
767	chr11	23885694	23885695	rs75750528	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p14.3	NR	rs75750528-G	0.01916	2E-8	(COL18A1)	0.05939	NR unit decrease	Illumina [1671387] (imputed)	N
767	chr11	23929632	23929633	rs35294279	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	11p14.3	NR	rs35294279-C	0.037	2E-7		1.67	[1.39-1.92]	Illumina [64973696] (imputed)	N
767	chr11	23955312	23955313	rs7116456	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	11p14.3	intergenic	rs7116456-T	0.003	1E-7	(drinks/week)	0.929	[0.6-1.26] unit increase	Affymetrix [2500000] (imputed)	N
768	chr11	24091142	24091143	rs16912059	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	11p14.3	NR	rs16912059-?	NR	2E-6				Illumina [7500450] (imputed)	N
769	chr11	24194588	24194589	rs7113850	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	11p14.3	LUZP2	rs7113850-G	0.78	5E-6		1.54	[1.29-1.83] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
769	chr11	24231482	24231483	rs116510623	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	11p14.3	LUZP2	rs116510623-G	0.034	6E-7		1.65	[1.35-2.01]	Illumina [1438399] (imputed)	N
769	chr11	24236095	24236096	rs7106204	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	11p14.3	intergenic	rs7106204-?		3E-6				Affymetrix, Illumina [6750581] (imputed)	N
770	chr11	24252527	24252528	rs16912285	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11p14.3	LUZP2	rs16912285-G	0.10	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
770	chr11	24374544	24374545	rs12363019	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11p14.3	NR	rs12363019-?		1E-9				NR [8377093]	N
770	chr11	24374544	24374545	rs12363019	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11p14.3	NR	rs12363019-?	NR	5E-10		1.06375	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
770	chr11	24374544	24374545	rs12363019	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11p14.3	NR	rs12363019-?	NR	3E-9				Illumina [up to 5582932] (imputed)	N
770	chr11	24375178	24375179	rs11027827	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11p14.3	NR	rs11027827-?		1E-9				NR [8377093]	N
770	chr11	24375178	24375179	rs11027827	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11p14.3	LUZP2	rs11027827-C	NR	2E-8	(EA)	1.0638298	[1.04-1.09]	Illumina [6627481] (imputed)	N
770	chr11	24376615	24376616	rs111511290	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs111511290-?	NR	5E-8				NR [2625067]	N
770	chr11	24376615	24376616	rs111511290	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs111511290-A	0.4513	4E-8		0.06007472	[0.039-0.081] unit decrease	NR [NR]	N
771	chr11	24381897	24381898	rs17234749	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11p14.3	LUZP2	rs17234749-G	NR	2E-8		1.0582011	[1.04-1.08]	Illumina [6627481] (imputed)	N
771	chr11	24381897	24381898	rs17234749	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11p14.3	LUZP2	rs17234749-G	NR	5E-9		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
771	chr11	24385568	24385569	rs12360997	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p14.3	NR	rs12360997-G	NR	2E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
771	chr11	24385582	24385583	rs12365432	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11p14.3	ENSG00000207252	rs12365432-?	NR	1E-8		0.011204787	[0.0073-0.0151] unit decrease	NR [7306098]	N
771	chr11	24398589	24398590	rs1899546	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11p14.3	intergenic	rs1899546-?		1E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
771	chr11	24403619	24403620	rs11027857	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11p14.3	LUZP2	rs11027857-A	0.499	3E-9		1.064	[1.042-1.085]	Affymetrix, Illumina [9005918] (imputed)	N
771	chr11	24406418	24406419	rs1899543	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11p14.3	LUZP2	rs1899543-?	NR	1E-9		1.059322	[1.04-1.08]	Illumina [8000000] (imputed)	N
772	chr11	24521665	24521666	rs7943454	29747637	Li JQ	2018-05-10	BMC Med Genomics	Genome-wide association study identifies two loci influencing plasma neurofilament light levels.	Plasma neurofilament light levels	176 European ancestry mild cognitive impairment cases, 172 European ancestry Alzheimer's disease cases, 179 European ancestry controls	NA	11p14.3	LUZP2	rs7943454-T	0.46	1E-6			NR NR increase	Illumina [301687]	N
772	chr11	24555147	24555148	rs11027983	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p14.3		rs11027983-G	0.584	8E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
772	chr11	24577182	24577183	rs1509605	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p14.3	NR	rs1509605-T	0.483670513603729	3E-8		0.006433542	[0.0041-0.0087] unit increase	NR [NR]	N
772	chr11	24587781	24587782	rs183154732	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	11p14.3	NR	rs183154732-T	0.9786	5E-8		1025.99	[657.75-1394.23] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
772	chr11	24611129	24611130	rs12361953	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	11p14.3	LUZP2	rs12361953-C	0.15	8E-7				Affymetrix [614963]	N
772	chr11	24641390	24641391	rs183285374	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	11p14.3	LUZP2	rs183285374-A	0.9973	6E-7		0.6216	[0.38-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
772	chr11	24641390	24641391	rs183285374	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	11p14.3	LUZP2	rs183285374-A	0.9973	2E-6		0.5953	[0.35-0.84] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
773	chr11	24658832	24658833	rs1972081	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	11p14.3	NR	rs1972081-C	0.34669	8E-6				Illumina [5378266] (imputed)	N
773	chr11	24678818	24678819	rs4561213	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	11p14.3	LUZP2	rs4561213-G	0.53	3E-7		0.0	[0.002-0.006] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
773	chr11	24700544	24700545	rs7118149	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology and risky substance use	604 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	11p14.3		rs7118149-A	0.3776	9E-6		1.41	[1.21-1.65]	Illumina [248101]	N
773	chr11	24721900	24721901	rs192915157	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	11p14.3	LUZP2	rs192915157-T	0.0013	7E-6		1.2859	[0.72-1.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
773	chr11	24725120	24725121	rs4600211	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11p14.3		rs4600211-T	0.7892	2E-6		31.888813	z score increase	NR [6814003]	N
773	chr11	24730025	24730026	rs7938982	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	11p14.3	LUZP2	rs7938982-?	NR	5E-6		4.58	z-score increase	Illumina [1819374] (imputed)	N
773	chr11	24730025	24730026	rs7938982	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	11p14.3	LUZP2	rs7938982-?		6E-6	(EA)	0.381	unit increase	Illumina [1819374] (imputed)	N
773	chr11	24738742	24738743	rs11028121	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p14.3	NR	rs11028121-?	NR	5E-6				Affymetrix [NR]	N
773	chr11	24757324	24757325	rs4923207	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	11p14.3	LUZP2	rs4923207-T	0.81	1E-6		0.049	[0.029-0.069] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
773	chr11	24767383	24767384	rs2631419	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	11p14.3	LUZP2	rs2631419-T	0.32	5E-6		1.29	[1.16-1.44]	Affymetrix, Illumina [up to 7729175] (imputed)	N
774	chr11	24780692	24780693	rs140312969	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LUZP2	rs140312969-?	NR	2E-8	(male)	3.23288	[NR] unit decrease	Affymetrix [NR] (imputed)	N
774	chr11	24780692	24780693	rs140312969	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LUZP2	rs140312969-?	NR	1E-8		1.82767	[NR] unit decrease	Affymetrix [NR] (imputed)	N
774	chr11	24809439	24809440	rs11028175	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	11p14.3	LUZP2	rs11028175-A	0.07	2E-7		0.87	[0.60-1.14] unit increase	Illumina [NR] (imputed)	N
774	chr11	24836374	24836375	rs139971893	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	11p14.3	NR	rs139971893-?	NR	4E-6		0.0461	[0.027-0.066] unit increase	Illumina [~ 7800000] (imputed)	N
774	chr11	24849565	24849566	rs10500991	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	11p14.3	LUZP2	rs10500991-?	NR	2E-6	(serum transferrin)			Illumina [315887]	N
775	chr11	25015093	25015094	rs11028325	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	11p14.3	Intergenic	rs11028325-C	NR	5E-6		2.2		Illumina [2711511] (imputed)	N
775	chr11	25019368	25019369	rs77230196	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	11p14.3	NR	rs77230196-C	0.0706573	3E-6		1.29	[1.16-1.43]	Illumina [8992756] (imputed)	N
775	chr11	25020103	25020104	rs187361301	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	11p14.3		rs187361301-?	NR	6E-6		0.9437306	[0.54-1.35] unit increase	Illumina [9875426] (imputed)	N
775	chr11	25020103	25020104	rs187361301	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11p14.3		rs187361301-?	NR	4E-7		1.1035289	[0.68-1.53] unit increase	Illumina [9842460] (imputed)	N
775	chr11	25026999	25027000	rs7931096	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	11p14.3	LUZP2	rs7931096-A	NR	3E-6		2.23		Illumina [2711511] (imputed)	N
776	chr11	25037175	25037176	rs4086075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.3	Intergenic	rs4086075-T	0.4909	5E-13	(MTAG)	0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
776	chr11	25058936	25058937	rs12789313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.3		rs12789313-T	0.4907	7E-11		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
776	chr11	25062397	25062398	rs1446209	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p14.3	Intergenic	rs1446209-A	0.5169	5E-8	(MTAG)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
776	chr11	25064296	25064297	rs1596854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p14.3		rs1596854-?	NR	5E-8				NR [~ 8900000] (imputed)	N
776	chr11	25064296	25064297	rs1596854	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.3		rs1596854-A	0.4897	1E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
776	chr11	25071431	25071432	rs4567409	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11p14.3	LUZP2	rs4567409-G	0.4925	5E-10		0.012579985	[0.0086-0.0165] unit decrease	Affymetrix [up to 18485882] (imputed)	N
776	chr11	25079840	25079841	rs767639836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	11p14.3		rs767639836-T	NR	4E-9		4.5904	[3.06-6.12] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
776	chr11	25101955	25101956	rs1562263	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p14.3	NR	rs1562263-?	NR	2E-7				Affymetrix [NR]	N
776	chr11	25113780	25113781	rs11602337	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	11p14.3	intergenic	rs11602337-T	0.2923	8E-6		0.2943	[0.16-0.42] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
776	chr11	25134543	25134544	rs12788764	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	11p14.3	intergenic	rs12788764-C	NR	5E-6	(Fixed effect)	0.07	[0.05-0.09] unit decrease	Illumina [4736131] (imputed)	N
777	chr11	25169601	25169602	rs6484106	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.3	TMEM16C	rs6484106-?	NR	1E-6	(TAG 54:4)	0.27076897	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
777	chr11	25207703	25207704	rs12794435	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	11p14.3	NR	rs12794435-?	NR	5E-6		1.16	[1.09-1.23]	Illumina [2056878] (imputed)	N
777	chr11	25221598	25221599	rs113652043	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p14.3	NR	rs113652043-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
777	chr11	25237453	25237453	rs368493076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	11p14.3		rs368493076-AAT	NR	5E-9		0.1656	[0.11-0.22] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
777	chr11	25260987	25260988	rs75764622	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p14.3	NR	rs75764622-?	NR	1E-6		4.864	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
777	chr11	25291014	25291015	rs11028546	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11p14.3	Intergenic	rs11028546-?	NR	3E-6		2.881	[NR]	Affymetrix [492217] (imputed)	N
777	chr11	25293413	25293414	rs17307778	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p14.3	NR	rs17307778-?	NR	5E-6	(AA)	17.81	[15.65-19.97]	Illumina [905956]	N
778	chr11	25311074	25311075	rs1593415	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p14.3	NR	rs1593415-?	NR	9E-6	(AA)	17.58	[15.42-19.74]	Illumina [905956]	N
779	chr11	25490481	25490482	rs10834691	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p14.3	NR	rs10834691-G	0.459134585485307	4E-6	(IGP22)	0.1479	[0.085-0.211] unit increase	Illumina [~ 2500000] (imputed)	N
780	chr11	25563492	25563493	rs16914101	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11p14.3	NR	rs16914101-?	NR	2E-6	(AA)	4.9	[4.04-5.76]	Illumina [905956]	N
780	chr11	25672381	25672389	rs151311539	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	11p14.3	NR	rs151311539-A		8E-6		0.2171	[0.12-0.31] unit increase	Illumina [12759548] (imputed)	N
781	chr11	25800277	25800278	rs10767455	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	11p14.3	intergenic	rs10767455-?	NR	4E-7	(AA)	2.1	[1.32-2.88] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr11	25885204	25885205	rs184924771	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	11p14.3	NR	rs184924771-C	0.010000000000000009	9E-7		2.564103	[1.75-3.7]	NR [8482392] (imputed)	N
782	chr11	25892581	25892582	rs115514216	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p14.3	Intergenic	rs115514216-T	NR	3E-9	(between families)	5.958	unit decrease	Affymetrix [up to 15107142] (imputed)	N
782	chr11	25929958	25929959	rs1441519	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide output	229 European ancestry infants		11p14.3	ANO3, MUC15, LUZP2, SLC5A12	rs1441519-T	NR	2E-7	(adjusted)	0.1	nL/s decrease	Illumina [567864]	N
782	chr11	25929958	25929959	rs1441519	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide levels	229 European ancestry infants		11p14.3	LUZP2, ANO3, MUC15, SLC5A12	rs1441519-T	NR	2E-6		2.18	ppb decrease	Illumina [567864]	N
783	chr11	25994231	25994232	rs61885278	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella buccae abundance in stool	5,959 Finnish ancestry individuals	NA	11p14.3		rs61885278-A	0.0106902	4E-8		0.310678	[0.2-0.42] unit increase	Illumina [7980478] (imputed)	N
783	chr11	26012192	26012193	rs4086865	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	11p14.3	Intergenic	rs4086865-?		7E-6		1.665	[NR]	Affymetrix [492217] (imputed)	N
783	chr11	26012231	26012232	rs4086867	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	11p14.3	RP11-405K6.1, ANO3	rs4086867-?	NR	2E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
783	chr11	26045600	26045601	rs7932614	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait variability	2,946 individuals	NA	11p14.3	ANO3	rs7932614-A	0.57	4E-7	(stride length SD)	0.246	[0.15-0.34] unit decrease	Illumina [6200000] (imputed)	N
783	chr11	26062101	26062101	rs10642753	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	11p14.3	LUZP2, ANO3	rs10642753-?	NR	1E-18		1.141	[1.108-1.175]	Illumina [13729857] (imputed)	N
783	chr11	26074180	26074181	rs73433432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p14.3	RP11-336F14.1	rs73433432-A	NR	1E-8		0.0166057	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
783	chr11	26074180	26074181	rs73433432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p14.3	RP11-336F14.1	rs73433432-A	NR	9E-9		0.0167654	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
783	chr11	26083006	26083007	rs1489502	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p14.3	NR	rs1489502-C	0.120095	3E-9		0.0173801	[0.012-0.023] unit increase	Affymetrix [15000001]	N
784	chr11	26160607	26160608	rs112930223	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	11p14.3		rs112930223-?	NR	5E-6		1.5155605	[0.87-2.16] unit increase	Illumina [9901720] (imputed)	N
784	chr11	26162739	26162740	rs12290663	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in darapladib-treated cardiovascular disease (time to event)	1,318 European, African American, Asian and other ancestry cases	NA	11p14.3	intergenic	rs12290663-A	0.013	3E-8		2.11	[1.61-2.78]	Affymetrix, Illumina [9334585] (imputed)	N
784	chr11	26162739	26162740	rs12290663	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in cardiovascular disease (time to event) (darapladib treatment interaction)	1,318 European, African American, Asian and other ancestry darapladib-treated cases, 1,440 European, African American, Asian and other ancestry placebo-treated cases	NA	11p14.3	intergenic	rs12290663-A	0.013	4E-6				Affymetrix, Illumina [9334585] (imputed)	N
784	chr11	26163505	26163506	rs56175671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p14.3		rs56175671-C	NR	9E-9		0.0604	[0.04-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
784	chr11	26163505	26163506	rs56175671	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p14.3	CTD-2507G9.1	rs56175671-C	0.0917925	9E-9		0.06036904	[0.04-0.081] unit increase	Affymetrix [7288503] (imputed)	N
784	chr11	26174402	26174403	rs10501039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p14.3		rs10501039-?	NR	1E-9				NR [~ 8900000] (imputed)	N
784	chr11	26180661	26180662	rs11604717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p14.3		rs11604717-G	NR	4E-8		0.0256	[0.017-0.035] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
784	chr11	26180661	26180662	rs11604717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p14.3	NR	rs11604717-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
784	chr11	26209270	26209271	rs4075765	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	11p14.3	NR	26209271-T		4E-6		0.0991	[0.057-0.141] unit increase	Illumina [at least 4916924] (imputed)	N
784	chr11	26212865	26212866	rs11605956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p14.3	CTD-2507G9.1, ANO3	rs11605956-C	NR	3E-10		0.0193597	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
784	chr11	26212865	26212866	rs11605956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p14.3	CTD-2507G9.1, ANO3	rs11605956-C	NR	2E-10		0.0193865	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
784	chr11	26212865	26212866	rs11605956	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p14.3	NR	rs11605956-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
784	chr11	26212865	26212866	rs11605956	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11p14.3	NR	rs11605956-T	0.6948	2E-8		0.0122	[0.0079-0.0165] unit increase	NR [~ 27400000] (imputed)	N
785	chr11	26279324	26279324	rs112225170	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p14.2	ANO3	rs112225170-AACTCCTGTTT	NR	6E-10		0.0326639	[0.022-0.043] unit increase	Affymetrix [319769] (imputed)	N
785	chr11	26279324	26279324	rs112225170	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p14.2	ANO3	rs112225170-AACTCCTGTTT	NR	8E-10		0.0324176	[0.022-0.043] unit increase	Affymetrix [319769] (imputed)	N
785	chr11	26279324	26279324	rs112225170	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p14.2	NR	rs112225170-A	0.920555	1E-10		0.00983126	[0.0068-0.0129] unit increase	Affymetrix [16582909] (imputed)	N
785	chr11	26279324	26279324	rs112225170	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p14.2	NR	rs112225170-A	0.920555	2E-9		0.0101591	[0.0067-0.0136] unit increase	Affymetrix [16582965] (imputed)	N
785	chr11	26287656	26287657	rs7105867	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	11p14.2	ANO3	rs7105867-?	NR	1E-6		0.066	[0.041-0.091] unit increase	NR [7682250] (imputed)	N
785	chr11	26306832	26306833	rs185421954	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11p14.2	NR	rs185421954-?	NR	5E-6		0.515013	[0.29-0.74] unit increase	NR [13958389] (imputed)	N
785	chr11	26341857	26341858	rs189719711	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT10	5,363 Icelandic ancestry individuals	NA	11p14.2		rs189719711-T	0.01308	2E-13		0.128622	[0.094-0.163] unit increase	Illumina [7506463] (imputed)	N
786	chr11	26346830	26346831	rs114444506	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-unrelated)	1,070 European ancestry cases, 4,118 European ancestry controls	Up to 1,034 European ancestry cases, Up to 1,645 European ancestry controls	11p14.2	ANO3	rs114444506-C	0.028	5E-14		2.03	[1.69-2.45]	Illumina [8129384] (imputed)	N
786	chr11	26346830	26346831	rs114444506	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	11p14.2	ANO3	rs114444506-C	0.028	2E-12		2.11	[1.72-2.60]	Illumina [8129524] (imputed)	N
786	chr11	26346830	26346831	rs114444506	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	11p14.2	ANO3	rs114444506-C	0.028	4E-20	(Overall)	2.09	[1.79-2.44]	Illumina [up to 8129553] (imputed)	N
786	chr11	26396168	26396169	rs117551578	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p14.2	NR	rs117551578-?	NR	2E-9				Illumina [7760689] (imputed)	N
787	chr11	26520051	26520052	rs117556552	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	11p14.2	ANO3, RPL36AP40, MUC15	rs117556552-T	0.05	5E-7		2.21	[1.41-3.01] unit decrease	Illumina [8344766] (imputed)	N
787	chr11	26526947	26526948	rs10834997	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	11p14.2	NR	rs10834997-G		1E-6		0.1247	[0.074-0.175] SD units increase	NR [10700000] (imputed)	N
787	chr11	26605330	26605331	rs12295638	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	11p14.2	MUC15	rs12295638-C	0.10	4E-6		1.49	[1.26-1.77]	Illumina [457251]	N
788	chr11	26623712	26623713	rs10767556	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	11p14.2	ANO3	rs10767556-G	NR	3E-6		2.029	[1.509-2.728]	Illumina [5407269] (imputed)	N
788	chr11	26680574	26680575	rs75941298	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	11p14.2	ANO3	rs75941298-A	0.1	8E-6		0.27	[0.15-0.39] unit increase	Illumina [4381914] (imputed)	N
788	chr11	26691663	26691664	rs10835054	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	11p14.2	ANO3, SLC5A12	rs10835054-?	NR	9E-7				Affymetrix, Illumina [at least 807411] (imputed)	N
788	chr11	26697016	26697017	rs10835056	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	11p14.2	NR	rs10835056-G	NR	3E-6		0.1194	[0.07-0.169] SD units decrease	NR [10700000] (imputed)	N
789	chr11	26741261	26741262	rs7112383	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11p14.2	SLC5A12, ANO3, FIBIN	rs7112383-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
789	chr11	26749304	26749305	rs146747823	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p14.2	SLC5A12	rs146747823-T	0.9966	9E-6		0.4126	[0.23-0.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
789	chr11	26751564	26751565	rs190760014	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	11p14.2	SLC5A12	rs190760014-T	0.0129	5E-6		0.2545	[0.14-0.36] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
789	chr11	26774812	26774813	rs4922771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p14.2		rs4922771-?	NR	4E-8				NR [~ 8900000] (imputed)	N
789	chr11	26823873	26823874	rs1450219	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.2	TMEM16C	rs1450219-?	NR	6E-6	(TAG 56:2)	0.20939727	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
789	chr11	26858629	26858630	rs113021326	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	11p14.2	FIBIN, SLC5A12, ANO3	rs113021326-T	0.16	9E-7		0.27	[0.16-0.38] unit decrease	Illumina [10000000] (imputed)	N
790	chr11	26965750	26965751	rs7107282	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	11p14.2	SLC5A12, CCDC34, LGR4	rs7107282-?		3E-6		3.959	[2.38-5.54] unit increase	Illumina [~ 4900000] (imputed)	N
791	chr11	27009326	27009327	rs143665171	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p14.2	NR	rs143665171-?	NR	5E-6		0.0078112	[0.0045-0.0112] unit increase	Affymetrix [805426] (imputed)	N
791	chr11	27016359	27016360	rs138273386	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11p14.2		rs138273386-?	NR	2E-10		0.0775681	[0.053-0.102] unit decrease	NR [9800000] (imputed)	N
791	chr11	27016359	27016360	rs138273386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p14.2		rs138273386-?	NR	5E-11				NR [~ 8900000] (imputed)	N
791	chr11	27016410	27016411	rs149580940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p14.2		rs149580940-G	NR	1E-16		0.0467	[0.036-0.058] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
791	chr11	27016410	27016411	rs149580940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p14.2		rs149580940-G	0.038488	1E-16		0.0466839	[0.036-0.058] unit decrease	Illumina [13479295] (imputed)	N
791	chr11	27016410	27016411	rs149580940	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p14.2	FIBIN	rs149580940-?	NR	4E-19		0.071703814	[0.056-0.087] unit decrease	Illumina [27896057] (imputed)	N
791	chr11	27085203	27085204	rs11354714	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p14.2	NR	rs11354714-C	0.4193	3E-6	(EA)	0.0318	[0.018-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
791	chr11	27089610	27089610	rs139981402	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p14.2	BBOX1	rs139981402-CATA	0.3564	9E-16		0.016	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
792	chr11	27147123	27147124	rs2304913	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p14.2	BBOX1	rs2304913-T	0.965675	1E-12	(deoxycarnitine)	0.451	[0.33-0.58] unit decrease	Illumina [13039987] (imputed)	N
792	chr11	27147123	27147124	rs2304913	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p14.2	BBOX1	rs2304913-T	0.965675	1E-12	(deoxycarnitine)	0.451	[0.33-0.58] unit decrease	Illumina [13039987] (imputed)	N
792	chr11	27235387	27235388	rs6416054	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p14.1	NR	rs6416054-T	0.069974	9E-10		0.037477	[0.025-0.049] unit decrease	NR [19129689] (imputed)	N
792	chr11	27236060	27236061	rs10501081	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11p14.1	NR	rs10501081-G	0.13766900000000004	1E-8		0.0216363	[0.014-0.03] unit increase	Affymetrix [16580851] (imputed)	N
792	chr11	27249329	27249330	rs35107435	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs35107435-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
792	chr11	27249329	27249330	rs35107435	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	11p14.1	NR	rs35107435-T	0.15	2E-6		1.17	1.10-1.24	NR [at least 8482392] (imputed)	N
792	chr11	27249329	27249330	rs35107435	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	11p14.1	NR	rs35107435-T	0.15	2E-6		1.17	1.10-1.24	NR [at least 8482392] (imputed)	N
793	chr11	27287107	27287108	rs11029901	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs11029901-?	NR	3E-134		0.0504377	[0.046-0.055] unit increase	Affymetrix [20259828] (imputed)	N
793	chr11	27287107	27287108	rs11029901	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p14.1	BBOX1-AS1	rs11029901-A	0.360387	6E-15	(men)	0.0393374	[0.029-0.05] unit increase	NR [17166351] (imputed)	N
793	chr11	27287107	27287108	rs11029901	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p14.1	BBOX1-AS1	rs11029901-A	0.359546	3E-41		0.0452679	[0.038-0.052] unit increase	NR [17166351] (imputed)	N
793	chr11	27287107	27287108	rs11029901	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p14.1	BBOX1-AS1	rs11029901-A	0.358812	1E-28	(women)	0.0505094	[0.041-0.06] unit increase	NR [17166351] (imputed)	N
793	chr11	27298125	27298126	rs7484147	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	BBOX1-AS1	rs7484147-T	0.362038	1E-115		0.0463012	[0.042-0.05] unit increase	NR [13737936] (imputed)	N
793	chr11	27298822	27298834	rs111969409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p14.1		rs111969409-T	NR	3E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
793	chr11	27303437	27303438	rs17309741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.1		rs17309741-?	NR	5E-15				NR [~ 8900000] (imputed)	N
793	chr11	27303854	27303855	rs7123749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs7123749-?	NR	6E-135				NR [~ 8900000] (imputed)	N
793	chr11	27303854	27303855	rs7123749	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs7123749-?	NR	2E-134		0.0503959	[0.046-0.055] unit increase	Affymetrix [20259828] (imputed)	N
793	chr11	27306363	27306364	rs7105860	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs7105860-C	0.6025	2E-15		0.0468	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
793	chr11	27308482	27308483	rs10450586	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs10450586-C	0.615	8E-14	(European)	0.0479	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
793	chr11	27329143	27329144	rs80040580	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	CCDC34	rs80040580-G	0.922051	6E-15		0.0280157	[0.021-0.035] unit increase	NR [13737936] (imputed)	N
793	chr11	27336703	27336704	rs10160456	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	11p14.1	CCDC34, LGR4, LIN7C	rs10160456-C	0.38	8E-6	(Conditional)	0.0681	[0.038-0.098] unit increase	Illumina [~ 2500000] (imputed)	N
793	chr11	27337800	27337801	rs6484292	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs6484292-?	NR	6E-115		0.0512088	[0.047-0.056] unit increase	Affymetrix [20259828] (imputed)	N
793	chr11	27338854	27338855	rs11029936	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	CCDC34	rs11029936-A	0.9481	3E-6		0.0756	[0.044-0.107] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
793	chr11	27338854	27338855	rs11029936	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	CCDC34	rs11029936-A	0.9481	3E-6		0.0756	[0.044-0.107] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
793	chr11	27358374	27358374	rs777116077	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs777116077-?	NR	4E-12		0.0149799	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
793	chr11	27362256	27362257	rs80317617	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p14.1	NR	rs80317617-T	NR	1E-6		0.029	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
793	chr11	27362256	27362257	rs80317617	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals	up to 192,226 European ancestry individuals	11p14.1	CCDC34	rs80317617-C	0.0714	2E-7		0.0188	[0.012-0.026] unit increase	Illumina [246328]	N
793	chr11	27372238	27372239	rs10835169	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	CCDC34	rs10835169-T	0.63044	1E-25		0.0212382	[0.017-0.025] unit decrease	NR [13737936] (imputed)	N
793	chr11	27372422	27372423	rs56095176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs56095176-?	NR	2E-13				NR [~ 8900000] (imputed)	N
793	chr11	27389738	27389739	rs34804482	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	LGR4	rs34804482-T	0.97367	6E-11		0.0386246	[0.027-0.05] unit increase	NR [13737936] (imputed)	N
794	chr11	27413307	27413308	rs1382470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p14.1		rs1382470-?	NR	1E-8				NR [~ 8900000] (imputed)	N
794	chr11	27419133	27419134	rs2169849	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p14.1	NR	rs2169849-C	0.429736	5E-14		0.0248365	[0.018-0.031] unit increase	NR [19129689] (imputed)	N
794	chr11	27420144	27420145	rs58604758	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p14.1	LGR4	rs58604758-A	0.06516	1E-13		1.12	NR	Affymetrix [9154080] (imputed)	N
794	chr11	27427495	27427496	rs74677637	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p14.1	NR	rs74677637-T	0.0428995	1E-18		0.0694624	[0.054-0.085] unit increase	NR [19129689] (imputed)	N
794	chr11	27431165	27431166	rs61887835	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	11p14.1	LGR4	rs61887835-?	NR	7E-6		4.7		Illumina [6778521] (imputed)	N
794	chr11	27439673	27439674	rs4567411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11p14.1		rs4567411-?	NR	4E-22				NR [~ 8900000] (imputed)	N
794	chr11	27444516	27444517	rs4128868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs4128868-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
794	chr11	27453318	27453319	rs78321654	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		11p14.1	LGR4	rs78321654-A	NR	2E-9		0.093162	NR unit increase	NR [NR] (imputed)	N
794	chr11	27453728	27453729	rs12804815	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	11p14.1	LGR4	rs12804815-G	0.98	5E-6	(women)	0.942	[0.54-1.35] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
794	chr11	27455581	27455582	rs11030003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p14.1		rs11030003-?	NR	6E-10				NR [~ 8900000] (imputed)	N
794	chr11	27456058	27456059	rs4514364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs4514364-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
794	chr11	27467108	27467109	rs4536164	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11p14.1	NR	rs4536164-A	0.3137	6E-12		0.0126	[0.0091-0.0161] unit increase	NR [~ 27400000] (imputed)	N
794	chr11	27487991	27487992	rs11030016	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p14.1	NR	rs11030016-C	0.2592	3E-11				NR [9056863] (imputed)	N
794	chr11	27496720	27496721	rs35070613	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11p14.1	RP11-159H22.2	rs35070613-A	0.9048	9E-6		0.0546	[0.03-0.079] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
794	chr11	27502553	27502554	rs7938352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p14.1		rs7938352-C	0.28	2E-11		6.75	z score increase	Affymetrix [9061022] (imputed)	N
794	chr11	27505350	27505351	rs11030023	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs11030023-?	NR	6E-20		0.0296032	[0.023-0.036] unit increase	Affymetrix [20259828] (imputed)	N
794	chr11	27505676	27505677	rs10835187	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs10835187-T	0.5352	7E-13	(European)	0.0452	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
794	chr11	27505676	27505677	rs10835187	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs10835187-T	0.5223	4E-14		0.0435	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
794	chr11	27505676	27505677	rs10835187	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	11p14.1	LGR4, LIN7C	rs10835187-C	NR	3E-13	(EA)	0.1245	[0.091-0.158] unit increase	Illumina [~ 2500000] (imputed)	N
794	chr11	27505676	27505677	rs10835187	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	11p14.1	LGR4, LIN7C	rs10835187-C	0.47	2E-17		0.127	[0.098-0.156] unit increase	Illumina [~ 2500000] (imputed)	N
794	chr11	27505676	27505677	rs10835187	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p14.1	LIN7C	rs10835187-T	0.55	5E-8		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
794	chr11	27505953	27505954	rs12786130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11p14.1		rs12786130-C	0.238203	6E-10		0.0269333	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
794	chr11	27505953	27505954	rs12786130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11p14.1		rs12786130-C	0.238203	1E-8		0.0242315	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
794	chr11	27505953	27505954	rs12786130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11p14.1		rs12786130-C	0.238203	3E-10		0.0276269	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
794	chr11	27505953	27505954	rs12786130	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p14.1	LGR4	rs12786130-?	NR	3E-6		1.3888888	[1.20-1.59]	NR [7738399] (imputed)	N
794	chr11	27507148	27507149	rs142981556	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs142981556-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
794	chr11	27507763	27507764	rs2352800	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs2352800-?	NR	1E-22		0.0254377	[0.02-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
794	chr11	27507901	27507902	rs4922787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs4922787-G	0.238409	2E-9		0.0259317	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
794	chr11	27507901	27507902	rs4922787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs4922787-G	0.238409	4E-9		0.0251967	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
794	chr11	27508680	27508681	rs11030024	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	11p14.1	LOC105376671	rs11030024-T	NR	2E-8		0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
794	chr11	27514205	27514206	rs12787251	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs12787251-?	NR	2E-20		0.0365187	[0.028-0.045] unit increase	Affymetrix [20259828] (imputed)	N
794	chr11	27520586	27520587	rs116874284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs116874284-?	NR	2E-11				NR [~ 8900000] (imputed)	N
794	chr11	27523185	27523186	rs10835188	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p14.1	LIN7C	rs10835188-?	NR	1E-6		1.4084507	[1.22-1.61]	NR [7738399] (imputed)	N
794	chr11	27523185	27523186	rs10835188	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	LIN7C	rs10835188-T	0.7596	2E-7	(EA,women)	0.0282	[0.018-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
794	chr11	27523185	27523186	rs10835188	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	LIN7C	rs10835188-T	0.7596	1E-9	(EA)	0.0253	[0.017-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
795	chr11	27526104	27526105	rs17309825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p14.1		rs17309825-?	NR	3E-13				NR [~ 8900000] (imputed)	N
795	chr11	27526104	27526105	rs17309825	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p14.1	NR	rs17309825-T	0.0391817	2E-8		5.66	z score decrease	NR [10847151] (imputed)	N
795	chr11	27559743	27559744	rs10767646	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11p14.1	BDNFOS	rs10767646-?	NR	3E-6		1.4084507	[1.22-1.61]	NR [7738399] (imputed)	N
795	chr11	27563381	27563382	rs988712	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	11p14.1	BDNF-AS	rs988712-T	0.2363	2E-8		0.0131747	[0.0086-0.0178] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
795	chr11	27563381	27563382	rs988712	21708048	Jiao H	2011-06-28	BMC Med Genomics	Genome wide association study identifies KCNMA1 contributing to human obesity.	Obesity	164 European ancestry morbidly obese  individuals, 163 European ancestry lean individuals	4,674 European ancestry morbidly obese individuals, 5,663 European ancestry lean individuals	11p14.1	BDNF	rs988712-G	0.75	5E-17		1.36	[1.20-1.55]	Affymetrix [406177]	N
795	chr11	27583128	27583129	rs7481311	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs7481311-T	0.24	3E-6		3.5	[2.03-4.97] percentage SD increase	Illumina [305846]	N
795	chr11	27583128	27583129	rs7481311	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs7481311-T	0.24	8E-6		3.15	[1.78-4.52] % SD increase	Illumina [305846]	N
795	chr11	27586435	27586436	rs1565228	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	11p14.1	BDNF-AS	rs1565228-?	NR	3E-9				NR [1800000]	N
795	chr11	27606132	27606133	rs2029362	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs2029362-T	0.5099	3E-9	(European)	0.0369	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
795	chr11	27606132	27606133	rs2029362	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs2029362-T	0.4986	7E-11		0.0371	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-10		0.0293428	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-10		0.0293428	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-9		0.0284707	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-9		0.0284707	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.02698	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.02698	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.0274774	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.0274774	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769756	6E-9		0.0268706	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769756	6E-9		0.0268706	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769756	2E-8		0.026696	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769756	2E-8		0.026696	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-13		0.0352728	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-13		0.0352728	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	4E-8		0.026585	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	4E-8		0.026585	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-9		0.0286608	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-9		0.0286608	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0272265	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0272265	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-9		0.0288681	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-9		0.0288681	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-10		0.0284912	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-10		0.0284912	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0265944	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0265944	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0271164	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-8		0.0271164	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.0274705	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.0274705	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	3E-8		0.0260603	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	3E-8		0.0260603	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-10		0.0298673	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-10		0.0298673	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	7E-9		0.0275017	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	7E-9		0.0275017	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.02565	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	1E-8		0.02565	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-12		0.0326275	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	6E-12		0.0326275	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-10		0.0309849	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	2E-10		0.0309849	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	9E-9		0.0269984	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
795	chr11	27609011	27609011	rs562883881	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p14.1		rs562883881-A,rs562883881-A	0.769766	9E-9		0.0269984	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
795	chr11	27610040	27610041	rs71480157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p14.1	NR	rs71480157-C	0.180945	4E-11		0.015981	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
795	chr11	27617565	27617566	rs11030060	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p14.1	LGR4, LIN7C, BDNF	rs11030060-?		5E-9				NR [7428630] (imputed)	N
795	chr11	27623308	27623309	rs12419462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs12419462-G	0.771242	9E-11		0.0306279	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
795	chr11	27623308	27623309	rs12419462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs12419462-G	0.771242	1E-9		0.0285755	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
795	chr11	27623308	27623309	rs12419462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11p14.1		rs12419462-G	0.77128	5E-9		0.0274548	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
795	chr11	27623308	27623309	rs12419462	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11p14.1		rs12419462-G	0.77128	3E-8		0.0259945	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
795	chr11	27631005	27631005	rs141078087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs141078087-A	0.772243	1E-9		0.0288311	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
795	chr11	27634372	27634373	rs35051342	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11p14.1	LIN7C, BDNF	rs35051342-?	NR	1E-9		0.032	[0.043-0.022] unit decrease	Illumina [12039492]	N
795	chr11	27636884	27636885	rs1488830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11p14.1		rs1488830-T	NR	7E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
795	chr11	27637013	27637014	rs1488831	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	11p14.1	BDNF-AS	rs1488831-T	0.0648	4E-9		5.9	NR z score increase	Affymetrix, Illumina [9950208] (imputed)	N
795	chr11	27640222	27640223	rs10767654	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	LINC00678, BDNF-AS	rs10767654-T	0.2154	3E-8		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
795	chr11	27640222	27640223	rs10767654	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	LINC00678, BDNF-AS	rs10767654-T	0.2154	3E-8		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
795	chr11	27640222	27640223	rs10767654	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11p14.1	LINC00678, BDNF-AS	rs10767654-T	0.2146	2E-12		0.0548	[0.04-0.07] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
795	chr11	27642307	27642308	rs12276130	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs12276130-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
795	chr11	27643724	27643725	rs11030084	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	11p14.1	BDNF	rs11030084-C	0.03	9E-8		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
795	chr11	27643724	27643725	rs11030084	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11p14.1	BDNF-AS, LINC00678	rs11030084-C	0.8132	8E-7		0.0064	[0.0039-0.0089] unit increase	Affymetrix [~ 7740000] (imputed)	N
795	chr11	27643724	27643725	rs11030084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11p14.1	NR	rs11030084-T	0.184	2E-13		0.0124831	[0.0091-0.0158] unit decrease	NR [~ 9732723] (imputed)	N
795	chr11	27643724	27643725	rs11030084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11p14.1	NR	rs11030084-T	0.184	2E-8		0.010606819	[0.0069-0.0143] unit decrease	NR [~ 10000000] (imputed)	N
795	chr11	27643724	27643725	rs11030084	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs11030084-T	0.1845	4E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
795	chr11	27646246	27646247	rs11030088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	11p14.1		rs11030088-G	0.748854	2E-11		0.0309971	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
795	chr11	27646246	27646247	rs11030088	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	11p14.1	LINC00678, BDNF-AS	rs11030088-G	NR	2E-8		0.00843	[0.0055-0.0114] unit decrease	Affymetrix [18485882] (imputed)	N
795	chr11	27646744	27646745	rs6416056	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11p14.1	LINC00678, BDNF-AS	rs6416056-A	0.7255	3E-10		0.045	[0.031-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
795	chr11	27648370	27648371	rs36029218	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11p14.1	NR	rs36029218-T	0.219	6E-10		0.01287532	[0.0088-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
795	chr11	27650523	27650524	rs10742179	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11p14.1	LIN7C, BDNF	rs10742179-A	0.2627	3E-15		1.0344		Affymetrix [11880941] (imputed)	N
795	chr11	27650523	27650524	rs10742179	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p14.1	LIN7C, BDNF	rs10742179-A	0.2627	3E-15		1.0358268		Affymetrix [11880941] (imputed)	N
795	chr11	27650523	27650524	rs10742179	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11p14.1	LINC00678, BDNF-AS	rs10742179-A	0.2683	4E-6		0.0416	[0.024-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
796	chr11	27656788	27656789	rs4923460	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p14.1	BDNF	rs4923460-G	0.7893	5E-7	(men)	0.0367	[0.022-0.051] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27656788	27656789	rs4923460	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs4923460-?	NR	7E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27656788	27656789	rs4923460	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs4923460-G	0.7879	5E-11	(men)	0.0411	[0.029-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27664694	27664695	rs113829044	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p14.1	LIN7C	rs113829044-T	0.0350783	6E-9		5.81	z score decrease	NR [10847151] (imputed)	N
796	chr11	27667201	27667202	rs925946	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11p14.1	NR	rs925946-T	0.3223	3E-7		0.146	mmHg decrease	Illumina [242296]	N
796	chr11	27667201	27667202	rs925946	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs925946-T	0.34	4E-9		3.8	[2.55-5.05] percentage SD increase	Illumina [305846]	N
796	chr11	27667201	27667202	rs925946	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs925946-T	0.34	9E-10		3.85	[2.62-5.08] % SD increase	Illumina [305846]	N
796	chr11	27667235	27667236	rs17309874	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11p14.1		rs17309874-G	0.74	1E-12		0.016	[0.012-0.02] unit decrease	Affymetrix [up to 90000000] (imputed)	N
796	chr11	27667235	27667236	rs17309874	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p14.1	NR	rs17309874-A	NR	6E-7	(EA)	0.111	[0.067-0.155] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
796	chr11	27667235	27667236	rs17309874	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	BDNF-AS	rs17309874-A	0.2463	9E-7		0.0386	[0.023-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
796	chr11	27667235	27667236	rs17309874	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p14.1	BDNF-AS	rs17309874-A	0.2463	9E-7		0.0386	[0.023-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
796	chr11	27667366	27667367	rs925947	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p14.1		rs925947-T	0.2016	1E-9		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
796	chr11	27668354	27668355	rs16917204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	11p14.1		rs16917204-C	0.407167	2E-27		0.0351228	[0.029-0.041] unit decrease	Illumina [13479178] (imputed)	N
796	chr11	27670107	27670108	rs10501087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11p14.1		rs10501087-?	NR	2E-9				NR [~ 8900000] (imputed)	N
796	chr11	27670107	27670108	rs10501087	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	11p14.1	BDNF	rs10501087-T	0.931	7E-7	(AA)	0.072	[0.043-0.101] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
796	chr11	27672251	27672252	rs10767658	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p14.1	BDNF	rs10767658-C	0.315	1E-8		0.01570858	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
796	chr11	27672251	27672252	rs10767658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p14.1		rs10767658-?	NR	5E-13				NR [~ 8900000] (imputed)	N
796	chr11	27672251	27672252	rs10767658	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs10767658-C	0.3074	3E-17	(EA)	0.0312	[0.024-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27672251	27672252	rs10767658	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs10767658-C	0.3074	3E-11	(EA, men)	0.0344	[0.024-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27672251	27672252	rs10767658	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs10767658-C	0.3074	1E-9	(EA, women)	0.0285	[0.019-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27672499	27672500	rs4923463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11p14.1		rs4923463-G	0.406596	3E-26		0.0292232	[0.024-0.035] unit decrease	Illumina [13479924] (imputed)	N
796	chr11	27675711	27675712	rs1519480	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	11p14.1	BDNF-AS1	rs1519480-?	NR	2E-6	(recessive model)		NR	Illumina [445723]	N
796	chr11	27675711	27675712	rs1519480	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p14.1	intergenic	rs1519480-T	0.5941	7E-13		0.016	[0.012-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
796	chr11	27675711	27675712	rs1519480	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p14.1	intergenic	rs1519480-T	0.5935	6E-10		0.014	[0.0095-0.0185] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
796	chr11	27675711	27675712	rs1519480	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	11p14.1	BDNF	rs1519480-A		2E-11		0.0058	[0.004-0.0076] unit decrease	Illumina [at least 200000]	N
796	chr11	27677582	27677583	rs11030099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p14.1	BDNF	rs11030099-A	0.198944	1E-9		0.01698022	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
796	chr11	27677582	27677583	rs11030099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p14.1	BDNF	rs11030099-A	0.198942	1E-10		0.017864682	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
796	chr11	27677585	27677586	rs11030100	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p14.1	BDNF	rs11030100-T	0.408	1E-28	(Japanese)	0.038	[0.032-0.044] unit decrease	Illumina [6108953] (imputed)	N
796	chr11	27679915	27679916	rs6265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p14.1		rs6265-T	NR	3E-58		0.0306	[0.027-0.034] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
796	chr11	27679915	27679916	rs6265	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p14.1		rs6265-C	0.814	2E-24		0.015	[0.013-0.017] unit increase	NR [NR] (imputed)	N
796	chr11	27679915	27679916	rs6265	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	11p14.1	BDNF	rs6265-C	0.810755	3E-13		0.021572	[0.016-0.027] unit increase	Affymetrix [19400838] (imputed)	N
796	chr11	27679915	27679916	rs6265	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11p14.1	BDNF	rs6265-T		1E-14		0.966	[NR]	Affymetrix [up to 79000000] (imputed)	N
796	chr11	27679915	27679916	rs6265	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p14.1	BDNF	rs6265-C	0.811547	2E-44		0.0245417	[0.021-0.028] unit increase	Affymetrix [12370749]	N
796	chr11	27679915	27679916	rs6265	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	11p14.1	BDNF	rs6265-?	NR	3E-6		0.054	[0.032-0.076] unit decrease	Illumina [6108828] (imputed)	N
796	chr11	27679915	27679916	rs6265	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p14.1	NR	rs6265-C	0.811757	8E-19		0.0227799	[0.018-0.028] unit increase	NR [NR]	N
796	chr11	27679915	27679916	rs6265	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs6265-?	NR	3E-58				Affymetrix [~ 8270000] (imputed)	N
796	chr11	27679915	27679916	rs6265	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p14.1	NR	rs6265-T	0.1896	2E-13		0.02457576	[0.018-0.031] unit decrease	Affymetrix [10549349] (imputed)	N
796	chr11	27679915	27679916	rs6265	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	11p14.1	NR	rs6265-?	NR	1E-7		0.04783296	[0.03-0.065] unit decrease	Illumina [32062178] (imputed)	N
796	chr11	27679915	27679916	rs6265	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11p14.1	BDNF	rs6265-T	0.19	2E-10		0.01	[0.0041-0.0159] unit decrease	Illumina [~ 250000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p14.1	BDNF	rs6265-T	0.1917	4E-18		0.02215149	[0.017-0.027] unit decrease	Affymetrix [11514654] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	BDNF	rs6265-T	0.188	3E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p14.1	NR	rs6265-T	0.188	9E-29		0.0153708	[0.013-0.018] unit decrease	NR [9732723] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p14.1	NR	rs6265-T	0.188	3E-19		0.029275492	[0.023-0.036] unit decrease	NR [~ 10000000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p14.1	NR	rs6265-T	0.181	7E-7		0.014062	[0.0085-0.0196] unit decrease	NR [9732723] (imputed)	N
796	chr11	27679915	27679916	rs6265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11p14.1	NR	rs6265-T	0.181	6E-16		0.0153388	[0.012-0.019] unit increase	NR [9732723] (imputed)	N
796	chr11	27679915	27679916	rs6265	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	11p14.1	BDNF	rs6265-T	NR	8E-12		0.019	[0.012-0.026] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
796	chr11	27679915	27679916	rs6265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p14.1		rs6265-?	NR	2E-15				NR [~ 8900000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p14.1		rs6265-?	NR	8E-61				NR [~ 8900000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	11p14.1	NR	rs6265-T	0.1839	4E-17		0.0183	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p14.1	NA	rs6265-T	0.1836	7E-89		0.0413	[0.037-0.045] unit decrease	NR [~ 27400000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p14.1	NA	rs6265-T	0.1836	7E-89		0.0413	[0.037-0.045] unit decrease	NR [~ 27400000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p14.1	NA	rs6265-T	0.1836	7E-89		0.0413	[0.037-0.045] unit decrease	NR [~ 27400000] (imputed)	N
796	chr11	27679915	27679916	rs6265	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p14.1	NR	rs6265-C	NR	2E-39		0.042	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
796	chr11	27679915	27679916	rs6265	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p14.1	BDNF	rs6265-C	0.8160000000000001	3E-68		0.0405	[0.036-0.045] unit increase	Illumina [246328]	N
796	chr11	27679915	27679916	rs6265	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p14.1	BDNF	rs6265-T	0.2	2E-51		0.04	[0.034-0.046] unit decrease	Illumina [6108953] (imputed)	N
796	chr11	27679915	27679916	rs6265	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs6265-T	0.1926	4E-7	(EA, men)	0.0317	[0.02-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27679915	27679916	rs6265	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs6265-T	0.1926	1E-9	(EA,women)	0.0353	[0.024-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27679915	27679916	rs6265	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p14.1	BDNF	rs6265-T	0.1926	1E-14	(EA)	0.0343	[0.025-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
796	chr11	27679915	27679916	rs6265	20418890	Tobacco and Genetics Consortium	2010-04-25	Nat Genet	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	11p14.1	BDNF	rs6265-C	0.79	2E-8	(smoking initiation)	1.06	[1.04-1.08]	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27679915	27679916	rs6265	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs6265-G	0.85	2E-7		4.0	[2.47-5.53] percentage SD increase	Illumina [305846]	N
796	chr11	27679915	27679916	rs6265	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	11p14.1	BDNF	rs6265-G	0.85	5E-10		4.58	[3.07-6.09] % SD increase	Illumina [305846]	N
796	chr11	27681595	27681596	rs11030102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11p14.1		rs11030102-G	NR	4E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
796	chr11	27681595	27681596	rs11030102	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p14.1	NR	rs11030102-C	0.233598	8E-9		0.04779227	[0.032-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
796	chr11	27681595	27681596	rs11030102	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs11030102-C	0.7479	5E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
796	chr11	27681595	27681596	rs11030102	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11p14.1	BDNF, BDNF-AS	rs11030102-C	0.7515	3E-8		0.0414	[0.027-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
796	chr11	27681595	27681596	rs11030102	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11p14.1	BDNF, BDNF-AS	rs11030102-C	0.7516	1E-6		0.0364	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
796	chr11	27684516	27684517	rs11030104	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	11p14.1	NR	rs11030104-?	NR	4E-7		0.04464408	[0.027-0.062] unit decrease	Illumina [32062178] (imputed)	N
796	chr11	27684516	27684517	rs11030104	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	11p14.1	BDNF	rs11030104-A	0.7964	9E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	7E-24				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	5E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	3E-14	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	7E-6	(men)	0.0554	[0.031-0.08] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	6E-11		0.0576	[0.04-0.075] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	2E-6	(women)	0.0595	[0.035-0.084] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	3E-10	(women)	0.041	[0.028-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	2E-7	(men)	0.034	[0.021-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	1E-15		0.0383	[0.029-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	5E-22		0.0403	[0.032-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	5E-11	(men)	0.0375	[0.026-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p14.1	BDNF	rs11030104-A	0.7872	1E-13	(women)	0.0426	[0.031-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27684516	27684517	rs11030104	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	11p14.1	BDNF	rs11030104-A	NR	7E-15	(additive model)	0.04	[0.03-0.05] unit increase	NR [9288881] (imputed)	N
796	chr11	27684516	27684517	rs11030104	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	11p14.1	NR	rs11030104-A	NR	1E-6				Affymetrix, Illumina [2499691] (imputed)	N
796	chr11	27684516	27684517	rs11030104	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p14.1	BDNF	rs11030104-A	0.792	6E-28	(EA)	0.041	[0.034-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
796	chr11	27684516	27684517	rs11030104	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p14.1	BDNF	rs11030104-A	0.792	5E-19	(EA, men)	0.045	[0.035-0.054] kg/m2 increase	Affymetrix, Illumina [2550021]	N
796	chr11	27684516	27684517	rs11030104	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p14.1	BDNF	rs11030104-A	0.792	2E-15	(EA, women)	0.038	[0.029-0.048] kg/m2 increase	Affymetrix, Illumina [2550021]	N
796	chr11	27684516	27684517	rs11030104	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p14.1	BDNF	rs11030104-A	0.791	7E-30		0.042	[0.034-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
796	chr11	27684516	27684517	rs11030104	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	11p14.1	BDNF	rs11030104-A	0.55	2E-20		0.0478	[0.038-0.058] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr11	27686195	27686196	rs10767659	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p14.1	NR	rs10767659-G	0.3538	5E-10		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
796	chr11	27686903	27686904	rs1808124	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p14.1	NA	rs1808124-T		4E-13		0.0143308	[0.01-0.018] unit increase	Illumina [13288253] (imputed)	N
796	chr11	27688285	27688286	rs4517468	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11p14.1	Intergenic	rs4517468-A	0.3146	3E-12		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
796	chr11	27693990	27693991	rs1401635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p14.1		rs1401635-G	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
796	chr11	27694240	27694241	rs2049045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p14.1		rs2049045-C	NR	4E-12		0.0214	[0.015-0.027] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
796	chr11	27694240	27694241	rs2049045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p14.1	NR	rs2049045-C	NR	2E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p14.1	BDNF-AS, BDNF	rs2049045-C	0.186024	5E-10		0.017671403	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
796	chr11	27694240	27694241	rs2049045	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11p14.1	NR	rs2049045-C	0.1877	2E-9		0.018764045	[0.013-0.025] unit decrease	Affymetrix [10613246] (imputed)	N
796	chr11	27694240	27694241	rs2049045	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11p14.1		rs2049045-C	NR	1E-10		0.027165849	[0.019-0.035] years increase	NR [7400000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	11p14.1	NR	rs2049045-G	NR	4E-6		0.009613	[0.0055-0.0137] unit increase	NR [11010159] (imputed)	N
796	chr11	27694240	27694241	rs2049045	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	11p14.1	NR	rs2049045-G	NR	9E-10		0.00834105	[0.0057-0.011] unit increase	NR [11010159] (imputed)	N
796	chr11	27694240	27694241	rs2049045	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	11p14.1	BDNF	rs2049045-?	NR	7E-10				NR [5554549] (imputed)	N
796	chr11	27694240	27694241	rs2049045	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	11p14.1	BDNF	rs2049045-?	NR	8E-42				NR [5554549] (imputed)	N
796	chr11	27694240	27694241	rs2049045	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	11p14.1	NR	rs2049045-G	0.8134	9E-11		1.0416667	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
796	chr11	27694240	27694241	rs2049045	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11p14.1	BDNF|BDNF-AS1	rs2049045-C	0.187	1E-11		0.0199	[0.014-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p14.1	BDNF	rs2049045-C	0.1868	3E-11		0.021908348	[0.015-0.028] unit decrease	Affymetrix [~ 11515000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11p14.1	NR	rs2049045-C	0.179	3E-6		0.00945415	[0.0055-0.0134] unit decrease	NR [9732723] (imputed)	N
796	chr11	27694240	27694241	rs2049045	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	11p14.1	BDNF	rs2049045-G	0.8084	3E-10	(EA)	0.0609	[0.042-0.08] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	11p14.1	BDNF	rs2049045-G	0.8078	5E-6	(EA, women)	0.058	[0.033-0.083] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p14.1	BDNF	rs2049045-G	0.8092	1E-12	(EA)	0.0373	[0.027-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2049045-?	NR	1E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27694240	27694241	rs2049045	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2049045-G	0.8092	9E-10	(EA, men)	0.0428	[0.029-0.057] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27694834	27694835	rs11030107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p14.1	BDNF	rs11030107-A	0.739243	9E-13		0.0161703	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
796	chr11	27694834	27694835	rs11030107	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	11p14.1	LIN7C	rs11030107-A	0.252832	3E-9		5.92	z score increase	NR [10847151] (imputed)	N
796	chr11	27695463	27695464	rs11030108	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p14.1	NA	rs11030108-A	0.3307	1E-17		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	11p14.1	NR	rs7103411-C	0.4006	1E-7	(Japanese)	0.047	[0.029-0.065] year increase	Illumina [at least 532488] (imputed)	N
796	chr11	27700124	27700125	rs7103411	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p14.1	BDNF	rs7103411-T	0.7825	3E-15		0.0379	[0.028-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p14.1	BDNF	rs7103411-T	0.781	1E-11	(women)	0.0413	[0.029-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs7103411-?	NR	2E-21				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs7103411-T	0.7851	2E-19	(EA)	0.0406	[0.032-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs7103411-T	0.7825	2E-22		0.0419	[0.033-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27700124	27700125	rs7103411	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p14.1	BDNP, LGR4	rs7103411-C	0.21	3E-11		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
796	chr11	27701364	27701365	rs10835211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.1		rs10835211-?	NR	7E-8				NR [~ 8900000] (imputed)	N
796	chr11	27702382	27702383	rs16917237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p14.1		rs16917237-?	NR	9E-16				NR [~ 8900000] (imputed)	N
796	chr11	27702382	27702383	rs16917237	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	11p14.1	NR	rs16917237-G	0.5995	2E-7	(Japanese)	0.047	[0.029-0.065] year decrease	Illumina [at least 532488] (imputed)	N
796	chr11	27702382	27702383	rs16917237	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p14.1	BDNF, BDNF-AS	rs16917237-T	0.2196	3E-6		0.0319	[0.019-0.045] unit decrease	NR [8041861] (imputed)	N
796	chr11	27702382	27702383	rs16917237	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p14.1	NR	rs16917237-T	0.207486122815417	1E-34		0.040926106	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
796	chr11	27704208	27704209	rs34379767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p14.1		rs34379767-A	NR	7E-63		0.036	[0.032-0.04] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
796	chr11	27705187	27705188	rs11030112	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p14.1	NR	rs11030112-A	0.3216	3E-32		0.031328913	[0.026-0.037] unit increase	Affymetrix [10549349] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	1E-9		0.013	mmol/L increase	NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	3E-25				NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	1E-18		0.017	mmol/L decrease	NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	3E-29		0.018	% increase	NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	7E-7		0.011	U/L increase	NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	11p14.1		rs61888762-G	0.32	1E-6		0.01	U/L increase	NR [NR] (imputed)	N
796	chr11	27709629	27709630	rs61888762	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs61888762-?	NR	7E-7	(female)	0.18249	[0.11-0.25] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27709629	27709630	rs61888762	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs61888762-?	NR	5E-7	(male)	0.1392	[0.085-0.194] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27709629	27709630	rs61888762	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs61888762-?	NR	2E-12		0.15962	[0.12-0.2] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27719421	27719422	rs76324918	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs76324918-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
796	chr11	27723333	27723334	rs56133711	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	11p14.1	BDNF	rs56133711-A	0.24	2E-10		0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
796	chr11	27723333	27723334	rs56133711	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p14.1	BDNF	rs56133711-G	0.7406	3E-24		0.0162341	[0.013-0.019] unit decrease	Affymetrix [12370749]	N
796	chr11	27723333	27723334	rs56133711	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11p14.1	BDNF	rs56133711-A	0.262839	2E-9		0.0443302	[0.03-0.059] unit increase	Affymetrix [9463307] (imputed)	N
796	chr11	27723333	27723334	rs56133711	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p14.1	BDNF	rs56133711-A	0.2619	5E-9		0.014390273	[0.0096-0.0192] unit increase	Affymetrix [11514654] (imputed)	N
796	chr11	27723333	27723334	rs56133711	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p14.1	NR	rs56133711-A	NR	3E-8		0.01517	[0.0098-0.0205] unit decrease	Affymetrix [10847151] (imputed)	N
796	chr11	27724744	27724745	rs988748	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	11p14.1	BDNF, RP11-587D21.4	rs988748-C	0.21	4E-9		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
796	chr11	27725985	27725986	rs10767664	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	11p14.1	NR	rs10767664-?	NR	7E-7		0.04198656	[0.025-0.059] unit increase	Illumina [32062178] (imputed)	N
796	chr11	27725985	27725986	rs10767664	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p14.1	BDNF	rs10767664-A	0.78	5E-26		0.19	[0.13-0.25] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
796	chr11	27728101	27728102	rs11030119	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs11030119-?	NR	6E-51				Affymetrix [~ 8270000] (imputed)	N
796	chr11	27728101	27728102	rs11030119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs11030119-?	NR	6E-6	(female)	0.11786	[0.067-0.169] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27728101	27728102	rs11030119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs11030119-?	NR	2E-11	(male)	0.25348	[0.18-0.33] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27728101	27728102	rs11030119	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p14.1	NR	rs11030119-?	NR	1E-15		0.19052	[0.14-0.24] unit increase	Affymetrix [7794483] (imputed)	N
796	chr11	27728101	27728102	rs11030119	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11p14.1	BDNF	rs11030119-A	0.31	3E-8		0.163	[0.1-0.22] unit decrease	Affymetrix [~ 9800000] (imputed)	N
796	chr11	27728101	27728102	rs11030119	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p14.1	BDNF	rs11030119-G		3E-6		0.196	unit increase	Affymetrix [at least 2696785] (imputed)	N
796	chr11	27728101	27728102	rs11030119	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p14.1	BDNF	rs11030119-G		2E-12		0.18	unit increase	Affymetrix [at least 2696785] (imputed)	N
796	chr11	27728538	27728539	rs2030323	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	11p14.1	NR	rs2030323-?	NR	7E-7		0.04186805	[0.025-0.058] unit increase	Illumina [32062178] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	11p14.1	BDNF	rs2030323-C	0.7803	4E-6	(women)	0.0534	[0.031-0.076] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	11p14.1	BDNF	rs2030323-C	0.7753	7E-9		0.0506	[0.034-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p14.1	BDNF	rs2030323-C	0.7858	7E-9	(EA,women)	0.0373	[0.025-0.05] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2030323-?	NR	4E-20	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2030323-?	NR	3E-15	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2030323-?	NR	2E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2030323-C	0.7854	3E-13	(EA, women)	0.0423	[0.031-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p14.1	BDNF	rs2030323-C	0.7826	9E-16	(women)	0.0443	[0.034-0.055] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	11p14.1	BDNF	rs2030323-C	0.79	6E-11	(Obesity class II)	1.13	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	11p14.1	BDNF	rs2030323-C	0.79	5E-17	(Overweight)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	11p14.1	BDNF	rs2030323-C	0.79	3E-22	(Obesity class I)	1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	11p14.1	BDNF	rs2030323-C	0.79	6E-10		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
796	chr11	27728538	27728539	rs2030323	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	11p14.1	BDNF	rs2030323-C	0.60	4E-16		0.046	[0.034-0.058] unit increase	Illumina [2178018] (imputed)	N
796	chr11	27729504	27729505	rs4922793	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11p14.1	BDNF	rs4922793-A	0.566	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
796	chr11	27730871	27730872	rs144089176	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs144089176-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
796	chr11	27733142	27733143	rs80083564	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate variance	341,584 European ancestry individuals	NA	11p14.1	BDNF	rs80083564-?	NR	1E-9				NR [5554549] (imputed)	N
796	chr11	27733142	27733143	rs80083564	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate	341,584 European ancestry individuals	NA	11p14.1	BDNF	rs80083564-?	NR	2E-22				NR [5554549] (imputed)	N
796	chr11	27734419	27734420	rs962369	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	11p14.1	NR	rs962369-?	NR	2E-7		7.169	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
796	chr11	27734419	27734420	rs962369	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11p14.1	BDNF	rs962369-C	0.309319588602834	2E-14		0.0047332	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
796	chr11	27734419	27734420	rs962369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p14.1	Intergenic	rs962369-T	0.7113	4E-11	(MTAG)	0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
796	chr11	27743555	27743556	rs28383487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs28383487-?	NR	4E-9				NR [~ 8900000] (imputed)	N
796	chr11	27744858	27744859	rs12273363	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	11p14.1		rs12273363-T	0.795	5E-21		0.032	[0.026-0.038] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
796	chr11	27744858	27744859	rs12273363	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p14.1	BDNF	rs12273363-T	0.794317	4E-16		0.0197647	[0.015-0.025] unit increase	Affymetrix [NR] (imputed)	N
796	chr11	27744858	27744859	rs12273363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs12273363-T	0.7999	1E-8	(conditional-joint)	0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
796	chr11	27747670	27747671	rs12288512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p14.1		rs12288512-A	NR	3E-15		0.0222	[0.017-0.028] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
796	chr11	27747670	27747671	rs12288512	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	11p14.1	BDNF	rs12288512-A	NR	6E-7		0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [2373958] (imputed)	N
796	chr11	27748492	27748493	rs17309930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p14.1	NR	rs17309930-A	NR	2E-14		0.0237	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr11	27748492	27748493	rs17309930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p14.1	NR	rs17309930-A	NR	5E-12		0.0215	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr11	27748492	27748493	rs17309930	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p14.1	BDNF	rs17309930-C	0.794867	1E-20		0.021922	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
796	chr11	27748492	27748493	rs17309930	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	11p14.1	BDNF	rs17309930-A	0.21	1E-7		0.045	[0.027-0.063] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
796	chr11	27749724	27749725	rs1491850	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	11p14.1	BDNF, KIF18A	rs1491850-?	NR	1E-8		0.02307	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
796	chr11	27776878	27776879	rs117130980	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p14.1	AC103796.1	rs117130980-T	0.9872	1E-10		0.0572	[0.04-0.075] unit increase	Affymetrix [18391927] (imputed)	N
796	chr11	27778924	27778925	rs75945125	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	11p14.1	BDNF	rs75945125-T	0.9533	6E-13		7.2	NR z score decrease	Affymetrix, Illumina [9950208] (imputed)	N
796	chr11	27782280	27782281	rs728635	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p14.1	BDNF	rs728635-G	0.9275	3E-16	(BDNF, 14047_78_3)	0.383859	[0.29-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
796	chr11	27782312	27782313	rs188453278	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	11p14.1	NR	rs188453278-?	NR	7E-6		0.3084	[0.17-0.44] unit decrease	Illumina [at least 560000] (imputed)	N
796	chr11	27783502	27783503	rs75601975	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p14.1	BDNF	rs75601975-T	0.9275	1E-11	(BDNF, 2421_7_3)	0.3196356	[0.23-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
797	chr11	27793469	27793470	rs34452566	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	11p14.1	BDNF	rs34452566-G	0.801102	3E-10	(EA)	0.00972968	[0.0067-0.0128] unit decrease	Affymetrix [~ 8800000] (imputed)	N
797	chr11	27799870	27799871	rs5790666	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	11p14.1	KIF18A	rs5790666-?	NR	8E-9		2.32	[1.65-3.26]	Affymetrix [426851] (imputed)	N
797	chr11	27850630	27850631	rs1826333	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	11p14.1		rs1826333-C	0.721	1E-5		1.4		Illumina [5411567] (imputed)	N
797	chr11	27850630	27850631	rs1826333	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	11p14.1		rs1826333-C	0.721	4E-6		1.6		Illumina [5411261] (imputed)	N
797	chr11	27901951	27901952	rs61890097	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs61890097-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
798	chr11	27958078	27958079	rs10767676	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	11p14.1	Intergenic	rs10767676-A	NR	8E-6	(adjusted for total body fat)	0.107	[0.06-0.154] unit decrease	Illumina [8511049] (imputed)	N
798	chr11	28008971	28008972	rs4244533	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	11p14.1	KIF18A	rs4244533-A	0.7988	1E-9		0.0719	[0.049-0.095] unit decrease	NR [9744772] (imputed)	N
798	chr11	28009462	28009463	rs1568889	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	11p14.1	NR	rs1568889-?	NR	2E-6	(recessive)			Affymetrix [NR]	N
799	chr11	28057956	28057957	rs10458896	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11p14.1	NR	rs10458896-T	0.7017	8E-7		0.142	mmHg decrease	Illumina [242296]	N
799	chr11	28071200	28071201	rs79312974	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	11p14.1		rs79312974-?	NR	8E-6		2.07812	[1.76-2.4]	NR [663083]	N
799	chr11	28077708	28077708	rs11389722	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11p14.1	NR	rs11389722-G	0.512245	1E-10		0.0201825	[0.014-0.026] unit increase	Affymetrix [16577424] (imputed)	N
800	chr11	28233767	28233768	rs11601602	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p14.1	METTL15	rs11601602-G	0.142	9E-6	(Dinner intake )	0.04	[NR] kcal increase	Illumina [899892]	N
800	chr11	28261571	28261572	rs769815213	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	11p14.1	METTL15	rs769815213-A	0.9989	4E-6		1.1922	[0.68-1.7] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
800	chr11	28279094	28279095	rs7924896	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11p14.1	METTL15	rs7924896-?	NR	2E-8		0.01004	[0.006-0.0141] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
801	chr11	28355656	28355657	rs10835310	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p14.1	NR	rs10835310-T	NR	5E-7	(EA)	0.0994	[0.061-0.138] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
801	chr11	28361799	28361800	rs11030282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p14.1		rs11030282-?	NR	7E-14				NR [~ 8900000] (imputed)	N
801	chr11	28403472	28403473	rs12280392	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11p14.1	METTL15	rs12280392-T	0.77	2E-7				Affymetrix, Illumina [8002429] (imputed)	N
801	chr11	28422495	28422496	rs4923536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11p14.1		rs4923536-G	NR	2E-9		0.0409	[0.028-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
801	chr11	28422495	28422496	rs4923536	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11p14.1	RP11-22P4.1	rs4923536-G	0.456313	2E-8		0.046465393	[0.03-0.063] unit increase	Affymetrix [7288503] (imputed)	N
801	chr11	28442178	28442179	rs34548197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs34548197-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
802	chr11	28454718	28454718	rs202190491	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11p14.1	NR	rs202190491-TG	0.552154	2E-8		0.0114805	[0.0075-0.0155] unit increase	Affymetrix [16583148] (imputed)	N
802	chr11	28479534	28479535	rs4923541	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p14.1	METTL15	rs4923541-T	0.5104	6E-10		1.0250076		Affymetrix [11880941] (imputed)	N
802	chr11	28483786	28483787	rs2585810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.1		rs2585810-?	NR	7E-9				NR [~ 8900000] (imputed)	N
802	chr11	28483786	28483787	rs2585810	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p14.1	METTL15, KCNA4	rs2585810-G		3E-8		0.22	unit decrease	Affymetrix [at least 2696785] (imputed)	N
802	chr11	28483786	28483787	rs2585810	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p14.1	METTL15, KCNA4	rs2585810-G		1E-6		0.117	unit decrease	Affymetrix [at least 2696785] (imputed)	N
802	chr11	28497638	28497639	rs4417256	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11p14.1	NR	rs4417256-?		5E-9				NR [520857]	N
802	chr11	28511595	28511596	rs12577283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p14.1		rs12577283-?	NR	6E-11				NR [~ 8900000] (imputed)	N
802	chr11	28532657	28532658	rs2585807	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11p14.1	MIR8068	rs2585807-C	0.831	2E-7		0.007	[0.0043-0.0097] unit increase	Affymetrix [~ 7740000] (imputed)	N
802	chr11	28534897	28534898	rs4923543	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	11p14.1	METTL15	rs4923543-A	0.332	5E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
802	chr11	28570143	28570144	rs112718809	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	11p14.1		rs112718809-?	NR	6E-6		1.8644	[1.6-2.13]	NR [663083]	N
803	chr11	28577866	28577867	rs7396827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p14.1	intergenic	rs7396827-T	0.464	1E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix [18391927] (imputed)	N
803	chr11	28577866	28577867	rs7396827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p14.1	NR	rs7396827-C	0.534459321703641	8E-9		0.0053211567	[0.0035-0.0071] unit decrease	NR [NR]	N
803	chr11	28577866	28577867	rs7396827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p14.1	NR	rs7396827-C	0.534459321703641	3E-8		0.006564387	[0.0042-0.0089] unit decrease	NR [NR]	N
803	chr11	28577866	28577867	rs7396827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p14.1	NR	rs7396827-C	0.534459321703641	5E-9		0.008595702	[0.0057-0.0115] unit decrease	NR [NR]	N
803	chr11	28577866	28577867	rs7396827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11p14.1	NR	rs7396827-C	0.534459321703641	2E-8		0.007022951	[0.0046-0.0095] unit decrease	NR [NR]	N
803	chr11	28577866	28577867	rs7396827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p14.1	NR	rs7396827-C	0.534459321703641	6E-9		0.0055101817	[0.0037-0.0074] unit decrease	NR [NR]	N
803	chr11	28577866	28577867	rs7396827	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p14.1	NR	rs7396827-?	NR	3E-6		0.008096	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
803	chr11	28588425	28588426	rs16918024	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p14.1	METTL15	rs16918024-T	0.0714	8E-9		0.02889868	[0.019-0.039] unit decrease	Affymetrix [~ 11515000] (imputed)	N
803	chr11	28588425	28588426	rs16918024	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	11p14.1	METTL15	rs16918024-T	0.0713	4E-8		0.025186928	[0.016-0.034] unit decrease	Affymetrix [11515109] (imputed)	N
803	chr11	28591167	28591168	rs11030380	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11p14.1	NR	rs11030380-T	0.6	3E-6		0.00631481	[0.0037-0.009] unit increase	NR [~ 9732723] (imputed)	N
803	chr11	28591586	28591587	rs7127383	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p14.1	NR	rs7127383-T	0.602	2E-8		0.0126262	[0.0083-0.017] unit increase	NR [9732723] (imputed)	N
803	chr11	28602220	28602221	rs2585817	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11p14.1	MIR8068, LINC01616	rs2585817-G		5E-9		0.979	[NR]	Affymetrix [up to 79000000] (imputed)	N
803	chr11	28602220	28602221	rs2585817	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p14.1	METTL15	rs2585817-A	0.6181	5E-13		0.014932894	[0.011-0.019] unit increase	Affymetrix [11514654] (imputed)	N
803	chr11	28605920	28605921	rs181165930	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p14.1		rs181165930-G	0.0031721	1E-5		0.26834	[0.15-0.39] unit decrease	Affymetrix [15580782] (imputed)	N
803	chr11	28607244	28607245	rs7952220	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	11p14.1	NR	rs7952220-?		1E-8				NR [520857]	N
803	chr11	28616028	28616029	rs7938405	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.1	KIF18A	rs7938405-?	NR	7E-6	(creatine)	1.0493137	[0.59-1.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
803	chr11	28630745	28630746	rs59617050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11p14.1	NR	rs59617050-G	0.398	6E-13		0.0113382	[0.0083-0.0144] unit decrease	NR [9732723] (imputed)	N
803	chr11	28642319	28642320	rs10767733	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	11p14.1	NR	rs10767733-A	0.402825	4E-10		6.27	z score decrease	NR [10847151] (imputed)	N
803	chr11	28642380	28642381	rs10767734	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11p14.1	MIR8068	rs10767734-?	NR	4E-8		0.0725	[0.047-0.098] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
803	chr11	28642380	28642381	rs10767734	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p14.1	MIR8068, LINC01616	rs10767734-C	0.6317	1E-8		0.079	[0.051-0.107] unit decrease	Affymetrix [~ 11900000] (imputed)	N
803	chr11	28642560	28642561	rs10767735	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11p14.1	NR	rs10767735-C	0.3949	7E-7		0.006	[0.0036-0.0084] unit decrease	NR [7666894] (imputed)	N
803	chr11	28642652	28642653	rs4636654	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	11p14.1	NR	rs4636654-A	NR	3E-9		5.928	NR z score decrease	NR [NR]	N
803	chr11	28642652	28642653	rs4636654	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11p14.1	RP11-960D24.1, METTL15	rs4636654-A	0.3974	3E-10		0.026659915	[0.018-0.035] unit decrease	NR [NR]	N
803	chr11	28642652	28642653	rs4636654	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11p14.1	Intergenic	rs4636654-A	0.3982	4E-8	(MTAG)	0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
803	chr11	28642652	28642653	rs4636654	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p14.1	ENSG00000248990	rs4636654-A	NR	2E-8		5.64	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr11	28644625	28644626	rs11030391	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	11p14.1	METTL15	rs11030391-A	0.63	5E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
803	chr11	28645583	28645584	rs4267058	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p14.1	METTL15	rs4267058-T	0.626467	1E-9		0.00878598	[0.006-0.0116] unit increase	Affymetrix [12370749]	N
803	chr11	28648184	28648185	rs7931459	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	11p14.1	LOC105376602	rs7931459-?	NR	5E-8		5.465	NR z score decrease	Affymetrix [up to 6007810] (imputed)	N
803	chr11	28652995	28652996	rs4275621	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p14.1	NR	rs4275621-G	0.382	2E-16		0.00914483	[0.007-0.0113] unit decrease	NR [9732723] (imputed)	N
803	chr11	28652995	28652996	rs4275621	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p14.1	NR	rs4275621-G	0.382	4E-16	(Conditioned on chr11:27679916)	0.021367403	[0.016-0.027] unit decrease	NR [~ 10000000] (imputed)	N
803	chr11	28652995	28652996	rs4275621	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11p14.1	NR	rs4275621-G	0.376	2E-8		0.00847247	[0.0055-0.0114] unit increase	NR [9732723] (imputed)	N
803	chr11	28652995	28652996	rs4275621	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	11p14.1	intergenic	rs4275621-A	NR	3E-9		1.081081	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
803	chr11	28656063	28656064	rs7942078	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	11p14.1	METTL15	rs7942078-A	0.6552	2E-8		0.01390723	[0.009-0.0188] unit increase	Affymetrix [11515109] (imputed)	N
803	chr11	28656233	28656234	rs7942417	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p14.1		rs7942417-C	0.654	5E-20		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
803	chr11	28666537	28666538	rs7933262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.1	Intergenic	rs7933262-T	0.3515	9E-10	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
803	chr11	28668415	28668416	rs6484385	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p14.1	METTL15	rs6484385-?		7E-16				Affymetrix, Illumina [NR] (imputed)	N
803	chr11	28671628	28671629	rs10835387	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11p14.1	MIR8068	rs10835387-G	0.655432	7E-14		0.0161168	[0.012-0.02] unit decrease	NR [16516521] (imputed)	N
803	chr11	28674591	28674592	rs4391802	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11p14.1		rs4391802-A	0.707	1E-11		0.015	[0.011-0.019] unit increase	Affymetrix [up to 90000000] (imputed)	N
803	chr11	28676860	28676861	rs4923555	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p14.1	METTL15	rs4923555-A	0.655	1E-9		0.016412318	[0.011-0.022] unit increase	Affymetrix [~ 11515000] (imputed)	N
803	chr11	28678869	28678870	rs10767739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	11p14.1		rs10767739-G	0.592219	1E-10		0.0208134	[0.014-0.027] unit decrease	Illumina [13479178] (imputed)	N
803	chr11	28680142	28680143	rs2356013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11p14.1		rs2356013-C	0.591672	2E-11		0.0184851	[0.013-0.024] unit decrease	Illumina [13479924] (imputed)	N
803	chr11	28687765	28687766	rs4923556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p14.1	Intergenic	rs4923556-T	0.6512	2E-8	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
803	chr11	28698254	28698255	rs7940756	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11p14.1	NR	rs7940756-A	NR	7E-6	(EA)	0.0903	[0.051-0.13] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
804	chr11	28707674	28707675	rs10767744	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	METTL15	rs10767744-T	0.391	4E-8		0.0066	[0.0042-0.009] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
804	chr11	28711591	28711592	rs139688932	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-449 abundance in stool	5,959 Finnish ancestry individuals	NA	11p14.1		rs139688932-A	0.0233165	2E-8		0.191506	[0.12-0.26] unit increase	Illumina [7980478] (imputed)	N
804	chr11	28725495	28725496	rs516756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p14.1		rs516756-A	NR	4E-9		0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
804	chr11	28763320	28763321	rs7948120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs7948120-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
804	chr11	28763320	28763321	rs7948120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p14.1		rs7948120-?	NR	9E-9				NR [~ 8900000] (imputed)	N
804	chr11	28763648	28763649	rs6650164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p14.1		rs6650164-?	NR	4E-9				NR [~ 8900000] (imputed)	N
804	chr11	28789859	28789860	rs111456804	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p14.1	NR	rs111456804-C	0.9745	4E-6		0.0642	[0.037-0.091] unit decrease	Illumina [NR] (imputed)	N
804	chr11	28808616	28808617	rs1607227	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	11p14.1	METT5D1, OR2BH1P	rs1607227-G	NR	2E-9		1.031		NR [14661600] (imputed)	N
804	chr11	28809601	28809602	rs143312104	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	METTL15	rs143312104-T	0.046	1E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
804	chr11	28829881	28829882	rs1517572	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	11p14.1		rs1517572-A	0.4136	7E-10		1.038939	[1.026390443-1.051640974]	Affymetrix, Illumina [NR] (imputed)	N
804	chr11	28829881	28829882	rs1517572	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11p14.1	NR	rs1517572-C	NR	2E-10		0.81	unit increase	Affymetrix [14661600] (imputed)	N
804	chr11	28833740	28833741	rs2945108	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	11p14.1	NR	rs2945108-T	0.3612	8E-6		0.4795	NR unit increase	Affymetrix [3101376] (imputed)	N
805	chr11	28845568	28845569	rs2945091	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	11p14.1	intergenic	rs2945091-G	0.440867	9E-9	(EA)	0.00716434	[0.0047-0.0096] unit increase	Affymetrix [~ 8800000] (imputed)	N
805	chr11	28850194	28850195	rs925870	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	11p14.1	Intergenic	rs925870-T	0.848	2E-6		0.1	[0.059-0.141] unit increase	Affymetrix [7287191] (imputed)	N
805	chr11	28866668	28866669	rs10835420	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	11p14.1	METTL15	rs10835420-T		4E-10		0.0062	[0.0042-0.0082] unit increase	Affymetrix [13304133] (imputed)	N
805	chr11	28874996	28874997	rs17659798	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	11p14.1	NR	rs17659798-A	0.71	2E-10		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
805	chr11	28900297	28900301	rs140973288	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	11p14.1	Intergenic	rs140973288-?	NR	4E-6		1.286	[0.74-1.83] unit increase	Illumina [2820932] (imputed)	N
805	chr11	28926161	28926162	rs4576809	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11p14.1	METTL15	rs4576809-A	0.0945	3E-10		0.020828014	[0.014-0.027] unit increase	Illumina [9339358] (imputed)	N
806	chr11	28968000	28968001	rs11600674	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	METTL15	rs11600674-A	0.838	6E-10		0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
806	chr11	29016501	29016502	rs7126178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p14.1	Intergenic	rs7126178-A	0.5509	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
806	chr11	29036638	29036639	rs1982099	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p14.1	NR	rs1982099-C	0.2796	4E-8				NR [9056863] (imputed)	N
806	chr11	29063395	29063396	rs7123034	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.1	Intergenic	rs7123034-T	0.5462	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
806	chr11	29079453	29079454	rs1907604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11p14.1	Intergenic	rs1907604-A	0.5409	7E-9	(MTAG)	0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
806	chr11	29079587	29079588	rs17605875	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p14.1		rs17605875-G	0.26	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
806	chr11	29080663	29080664	rs7928703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p14.1		rs7928703-?	NR	8E-13				NR [~ 8900000] (imputed)	N
806	chr11	29094447	29094448	rs1844905	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	11p14.1		rs1844905-?	NR	8E-9				NR [9705931] (imputed)	N
807	chr11	29098621	29098622	rs78182109	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	11p14.1		rs78182109-G	0.943897	6E-6		0.0185467	[0.011-0.027] unit decrease	Illumina [13900000] (imputed)	N
807	chr11	29124181	29124182	rs16918636	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p14.1	FSHB	rs16918636-T	0.79	3E-8		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
807	chr11	29130604	29130605	rs10835483	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	MIR8068	rs10835483-G	0.868986	1E-12		0.0194624	[0.014-0.025] unit increase	NR [13737936] (imputed)	N
807	chr11	29142965	29142966	rs147729624	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11p14.1	intergenic	rs147729624-C	NR	3E-6		0.23112625	[0.13-0.33] unit decrease	Illumina [> 6200000] (imputed)	N
807	chr11	29147100	29147101	rs6484426	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	11p14.1	NR	rs6484426-C	0.13	1E-15		1.14	NR	NR [8853336] (imputed)	N
807	chr11	29158817	29158818	rs559777577	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11p14.1	NR	rs559777577-A	0.992804	2E-9		0.0868526	[0.058-0.115] unit increase	Affymetrix [16583148] (imputed)	N
807	chr11	29159939	29159940	rs10835489	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p14.1	MIR8068	rs10835489-G	0.867936	4E-8	(men)	0.0416284	[0.027-0.056] unit increase	NR [17166351] (imputed)	N
807	chr11	29159939	29159940	rs10835489	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p14.1	MIR8068	rs10835489-G	0.866927	1E-7		0.027983	[0.018-0.038] unit increase	NR [17166351] (imputed)	N
807	chr11	29162135	29162136	rs1602565	18677311	O'Donovan MC	2008-07-30	Nat Genet	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 cases, 1,517 controls	11p14.1	intergenic	rs1602565-C	0.11	3E-6		1.16	[NR]	Affymetrix [362532]	N
807	chr11	29184520	29184521	rs116923389	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11p14.1	NR	rs116923389-T	0.98097	6E-19		0.0979365	[0.076-0.12] unit increase	Affymetrix [16577424] (imputed)	N
807	chr11	29188690	29188691	rs661878	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p14.1	METTL15	rs661878-A	0.866936	3E-11		0.0137542	[0.0097-0.0178] unit increase	Affymetrix [12370749]	N
807	chr11	29195136	29195137	rs1491818	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	11p14.1	intergenic	rs1491818-C	0.31	8E-6	(Joint)			Illumina [254145]	N
807	chr11	29200383	29200384	rs2035838	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11p14.1	NR	rs2035838-A	0.851741	3E-10		0.0111111	[0.0076-0.0147] unit increase	Affymetrix [16578495] (imputed)	N
807	chr11	29200526	29200527	rs2035837	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11p14.1	NR	rs2035837-T	0.852191	7E-67		0.07286	[0.064-0.081] unit increase	Affymetrix [16577424] (imputed)	N
807	chr11	29201591	29201592	rs7949247	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	11p14.1		rs7949247-T	0.939061	5E-6		0.0179688	[0.01-0.026] unit decrease	Illumina [13900000] (imputed)	N
807	chr11	29204530	29204531	rs1994721	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p14.1	NR	rs1994721-G	0.851956	2E-32		0.0492752	[0.041-0.058] unit increase	Affymetrix [16577313] (imputed)	N
807	chr11	29204530	29204531	rs1994721	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11p14.1	NR	rs1994721-G	0.852059	6E-33		0.0335511	[0.028-0.039] unit increase	Affymetrix [16583148] (imputed)	N
807	chr11	29222020	29222021	rs1907608	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		LOC105376603/ RP11-466I1.1	rs1907608-A	0.42	7E-6		0.09	[0.051-0.129] unit decrease	Illumina [3700000] (imputed)	N
808	chr11	29230733	29230734	rs2452141	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p14.1	NA	rs2452141-A	0.3615	7E-11		0.011	[0.0077-0.0143] unit decrease	NR [~ 27400000] (imputed)	N
808	chr11	29242683	29242684	rs12364080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs12364080-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
808	chr11	29242683	29242684	rs12364080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p14.1		rs12364080-?	NR	1E-8				NR [~ 8900000] (imputed)	N
808	chr11	29258946	29258947	rs10835498	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p14.1	KCNA4	rs10835498-G	0.5691	9E-9		0.00797756	[0.0053-0.0107] unit decrease	Affymetrix [12370749]	N
808	chr11	29258946	29258947	rs10835498	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs10835498-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
808	chr11	29268029	29268030	rs12362063	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	11p14.1	NR	rs12362063-?	NR	1E-6		0.1877	[0.11-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
808	chr11	29304246	29304247	rs17513684	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	11p14.1	NR	rs17513684-G	NR	5E-6		0.01597	[0.0091-0.0228] unit increase	Illumina [541493]	N
808	chr11	29304246	29304247	rs17513684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p14.1		rs17513684-?	NR	7E-9				NR [~ 8900000] (imputed)	N
808	chr11	29323065	29323066	rs145843487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p14.1	NR	rs145843487-G	0.980824	4E-12		0.0755624	[0.054-0.098] unit increase	Affymetrix [16577313] (imputed)	N
808	chr11	29331968	29331969	rs72883760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs72883760-A	0.1985	9E-9		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
809	chr11	29367559	29367560	rs2185601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.1	Intergenic	rs2185601-A	0.2077	3E-9	(MTAG)	0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
809	chr11	29385291	29385292	rs2793472	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	11p14.1	LOC105376605	rs2793472-?	NR	9E-6				Illumina [622468]	N
809	chr11	29449098	29449099	rs2779154	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	11p14.1	LOC105376605	rs2779154-?	NR	9E-6				Illumina [622468]	N
810	chr11	29541757	29541758	rs116531924	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	11p14.1		rs116531924-T	NR	3E-6		0.44105282	[0.26-0.62] increase	Illumina [6334277] (imputed)	N
810	chr11	29617858	29617859	rs326779	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p14.1	NR	rs326779-?	NR	7E-6		4.491	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
811	chr11	29682697	29682698	rs704614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs704614-T	0.3808	1E-8	(conditional-joint)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
811	chr11	29704956	29704957	rs704615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p14.1		rs704615-?	NR	7E-8				NR [~ 8900000] (imputed)	N
812	chr11	29755546	29755547	rs322614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p14.1	Intergenic	rs322614-A	0.3732	4E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
812	chr11	29755546	29755547	rs322614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs322614-A	0.3817	1E-9		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
812	chr11	29755546	29755547	rs322614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.1	Intergenic	rs322614-A	0.3817	5E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
812	chr11	29761273	29761274	rs141199126	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	11p14.1		rs141199126-T	0.02	9E-6		2.05	1.49-2.83	NR [8807005] (imputed)	N
812	chr11	29783940	29783941	rs10835565	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p14.1	NR	rs10835565-T	NR	1E-8		5.671	z score increase	Affymetrix [10847151] (imputed)	N
812	chr11	29804527	29804528	rs509523	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p14.1	intergenic	rs509523-T	0.189565457012113	6E-8	(O_Lactobacillales_RNT)	0.163372	[0.1-0.22] unit increase	Illumina [7711310] (imputed)	N
812	chr11	29811793	29811794	rs793559	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p14.1	intergenic	rs793559-G	0.192551560181053	1E-6	(G_Streptococcus_RNT)	0.149486	[0.089-0.21] unit increase	Illumina [7711310] (imputed)	N
812	chr11	29872432	29872433	rs11030846	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.1	FSHB	rs11030846-?	NR	9E-6	(betaine)	0.2638161	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
813	chr11	29888571	29888572	rs118055855	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	11p14.1	NR	rs118055855-C	NR	4E-6		0.6907	[0.4-0.98] SD units decrease	NR [10700000] (imputed)	N
813	chr11	29930557	29930558	rs118166269	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	11p14.1	NR	rs118166269-?	NR	6E-6		0.2368	[0.14-0.34] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr11	29977240	29977241	rs11030909	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p14.1	FSHB	rs11030909-?	NR	7E-6	(betaine)	0.28846103	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
813	chr11	29998518	29998519	rs2357133	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	11p14.1	DCDC1, IMMP1L	rs2357133-A	0.356995	3E-6		0.7	[0.603 - 0.814]	Illumina [5396854] (imputed)	N
814	chr11	30029947	30029948	rs511217	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p14.1	KCNA4, FSHB, ARL14EP, MPPED2, DCDC1, PAX6, RCN1	rs511217-?		2E-49				Affymetrix, Illumina [NR] (imputed)	N
814	chr11	30029947	30029948	rs511217	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11p14.1	METTL15, KCNA4	rs511217-A	0.738	1E-11		6.793	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
814	chr11	30030435	30030436	rs536830	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11p14.1	NR	rs536830-?	NR	1E-6		0.150181	[0.09-0.211] unit decrease	NR [13958389] (imputed)	N
814	chr11	30036781	30036782	rs534311	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	11p14.1	NR	rs534311-T	0.2578	2E-8		0.0452	[0.029-0.061] unit increase	Illumina [~ 10600000] (imputed)	N
814	chr11	30049044	30049044	rs34335372	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	11p14.1	NR	rs34335372-?	NR	7E-6		0.0859098	[0.048-0.123] unit decrease	NR [13958389] (imputed)	N
814	chr11	30053659	30053660	rs144099278	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	11p14.1	NR	rs144099278-C		8E-6		0.4834	[0.27-0.7] SD units increase	NR [10700000] (imputed)	N
814	chr11	30054609	30054610	rs7944541	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p14.1	NR	rs7944541-G		5E-16		0.11	[0.09-0.13] unit increase	NR [NR]	N
814	chr11	30076199	30076200	rs11500237	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	11p14.1		rs11500237-C	NR	3E-7		2.31		Illumina [NR] (imputed)	N
815	chr11	30215260	30215261	rs11031002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CGA;FSHB	5,368 Icelandic ancestry individuals	NA	11p14.1		rs11031002-A	0.1216	5E-20		0.161625	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
815	chr11	30215260	30215261	rs11031002	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	11p14.1	FSHB	rs11031002-A	0.12210000000000001	9E-9		1.24	[1.15-1.34]	NR [24154061] (imputed)	N
815	chr11	30215260	30215261	rs11031002	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs11031002-?	NR	3E-11		0.0207568	[0.015-0.027] unit increase	Affymetrix [20259828] (imputed)	N
815	chr11	30215260	30215261	rs11031002	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	11p14.1	FSHB	rs11031002-A	0.121	4E-9	(LH)	0.221	[NR] unit increase	Illumina [7879351] (imputed)	N
815	chr11	30217502	30217503	rs605765	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p14.1		rs605765-T	0.6107	3E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
815	chr11	30223573	30223574	rs607987	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p14.1	FSHB	rs607987-G	0.383	5E-6	(EA, men)	0.024	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
815	chr11	30226355	30226356	rs11031005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ovarian cyst	10,847 European ancestry cases, 207,622 European ancestry controls, 2,896 East Asian ancestry cases, 79,865 East Asian ancestry controls	NA	11p14.1		rs11031005-C	NR	2E-8		0.1103	[0.072-0.149] unit decrease	Affymetrix, Illumina [25752875] (imputed)	N
815	chr11	30226355	30226356	rs11031005	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	11p14.1	FSHB	rs11031005-T	NR	1E-8	(random effect)	1.08	NR	NR [6904914] (imputed)	N
815	chr11	30226355	30226356	rs11031005	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11p14.1	NR	rs11031005-C	0.14286699999999997	7E-17		0.0325862	[0.025-0.04] unit increase	Affymetrix [16580851] (imputed)	N
815	chr11	30226355	30226356	rs11031005	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11p14.1	NR	rs11031005-C	0.14365799999999995	2E-10		0.0229697	[0.016-0.03] unit increase	Affymetrix [16585745] (imputed)	N
815	chr11	30226355	30226356	rs11031005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	11p14.1		rs11031005-?	NR	7E-20				NR [~ 8900000] (imputed)	N
815	chr11	30226355	30226356	rs11031005	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	11p14.1	ARL14EP, FSHB	rs11031005-T	0.85	9E-13		0.1593	[0.12-0.2] unit decrease	Illumina [> 10000000] (imputed)	N
815	chr11	30226355	30226356	rs11031005	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11p14.1	KCNA4, FSHB	rs11031005-?	NR	2E-8		0.035	[0.047-0.023] unit decrease	Illumina [12039492]	N
815	chr11	30226355	30226356	rs11031005	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	11p14.1	FSHB	rs11031005-C	0.129	2E-8	(FSH)	0.232	[NR] unit decrease	Illumina [7879351] (imputed)	N
815	chr11	30226527	30226528	rs11031006	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (reproductive subtype)	123 European ancestry cases, 2,964 European ancestry controls	84 European ancestry cases, 1,134 European ancestry controls	11p14.1	FSHB	rs11031006-?	NR	9E-6				Illumina [NR] (imputed)	N
815	chr11	30226527	30226528	rs11031006	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p14.1	FSHB	rs11031006-A	0.14	6E-15		1.1	[1.07-1.12]	Affymetrix, Illumina [8662096] (imputed)	N
815	chr11	30226527	30226528	rs11031006	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p14.1		rs11031006-A	0.1432	6E-15		0.0925	[0.069-0.116] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
815	chr11	30226527	30226528	rs11031006	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Heavy menstrual bleeding	9,813 European ancestry cases, 210,946 European ancestry controls	NA	11p14.1	NR	rs11031006-G	0.86	2E-13		1.1904762	[1.14-1.25]	Affymetrix [10308721] (imputed)	N
815	chr11	30226527	30226528	rs11031006	30760885	Mbarek H	2019-02-13	Eur J Hum Genet	Biological insights into multiple birth: genetic findings from UK Biobank.	Number of twin births	8,962 European ancestry cases, 409,591 European ancestry controls	NA	11p14.1	FSHB	rs11031006-G	0.86	4E-7		1.05		Affymetrix [8532721] (imputed)	N
815	chr11	30226527	30226528	rs11031006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p14.1		rs11031006-?	NR	3E-15				NR [~ 8900000] (imputed)	N
815	chr11	30226527	30226528	rs11031006	30202859	Laisk T	2018-09-07	Hum Mol Genet	Large scale meta-analysis highlights the hypothalamic-pituitary-gonadal (HPG) axis in the genetic regulation of menstrual cycle length.	Length of menstrual cycle	44,871 European ancestry women	NA	11p14.1	FSHB	rs11031006-A	0.86	4E-36		0.16	[0.14-0.18] unit decrease UK Biobank	Illumina [9344826] (imputed)	N
815	chr11	30226527	30226528	rs11031006	27132594	Mbarek H	2016-05-05	Am J Hum Genet	Identification of Common Genetic Variants Influencing Spontaneous Dizygotic Twinning and Female Fertility.	Spontaneous dizygotic twinning	1,980 European ancestry mothers of spontaneous dizygotic twins, 12,953 European ancestry controls	3,597 Icelandic ancestry mothers of spontaneous dizygotic twins, 297,348 Icelandic ancestry controls	11p14.1	FSHB	rs11031006-G	0.85	1E-10		1.14	1.06-1.22	Affymetrix, Illumina, Perlegen [at least 7903594] (imputed)	N
815	chr11	30226527	30226528	rs11031006	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	11p14.1	FSHB	rs11031006-A	0.14	1E-9		1.16	[1.11-1.22]	Illumina [~ 9000000] (imputed)	N
815	chr11	30226527	30226528	rs11031006	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	11p14.1	FSHB	rs11031006-G	0.85	9E-14		0.22	[0.16-0.28] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
815	chr11	30226527	30226528	rs11031006	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	11p14.1	KCNA4, FSHB, ARL14EP	rs11031006-A	0.15	2E-8		1.41	[1.21-1.65]	Illumina [at least 624044] (imputed)	N
815	chr11	30226527	30226528	rs11031006	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Luteinizing hormone levels in polycystic ovary syndrome	645 European ancestry cases	607 European ancestry cases	11p14.1	KCNA4, FSHB	rs11031006-A	0.2	3E-16		3.19	[2.15-4.23] mIU/mL increase	Illumina [at least 624044] (imputed)	N
815	chr11	30241697	30241698	rs35229181	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p14.1	FSHB	rs35229181-A	0.792	6E-9		0.0222	[0.015-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
815	chr11	30241697	30241698	rs35229181	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11p14.1	FSHB	rs35229181-A	0.7808	8E-7		0.022748	[0.014-0.032] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
815	chr11	30242286	30242287	rs74485684	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	11p14.1	FSHB	rs74485684-T	0.84	3E-8	(EA)	1.11	1.07-1.16	Affymetrix, Illumina [up to 6979035] (imputed)	N
815	chr11	30242286	30242287	rs74485684	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	11p14.1	FSHB	rs74485684-T	0.84	2E-8		1.11	1.07-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
815	chr11	30243794	30243795	rs1782508	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs1782508-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
815	chr11	30249998	30249999	rs7102088	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p14.1	NR	rs7102088-C	0.362324	7E-11		0.0136802	[0.0096-0.0178] unit increase	NR [NR]	N
815	chr11	30252351	30252352	rs10835638	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (indeterminate subtype)	231 European ancestry cases, 2,964 European ancestry controls	126 European ancestry cases, 1,134 European ancestry controls	11p14.1	FSHB	rs10835638-T	0.16	5E-12		1.81	1.44-2.27	Illumina [NR] (imputed)	N
815	chr11	30267037	30267038	rs515997	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	11p14.1		rs515997-?	NR	3E-9		0.0179	NR unit increase	NR [4484088] (imputed)	N
816	chr11	30319008	30319008	rs564036233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11p14.1	NR	rs564036233-GA	0.16810400000000003	3E-8		0.0149511	[0.0096-0.0203] unit increase	Affymetrix [16583148] (imputed)	N
816	chr11	30319008	30319008	rs564036233	26732621	Ruth KS	2016-01-04	Hum Reprod	Genetic evidence that lower circulating FSH levels lengthen menstrual cycle, increase age at menopause and impact female reproductive health.	Length of menstrual cycle	9,534 European ancestry individuals	NA	11p14.1	FSHB	rs564036233-GA	NR	1E-16		0.16	[0.12-0.20] SD increase	NR [~ 16800000] (imputed)	N
816	chr11	30346051	30346052	rs1222216	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p14.1	ARL14EP	rs1222216-C	0.773735	1E-13		0.0121516	[0.0089-0.0154] unit increase	Affymetrix [12370749]	N
816	chr11	30351222	30351223	rs7927974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p14.1		rs7927974-?	NR	1E-11				NR [~ 8900000] (imputed)	N
816	chr11	30353724	30353725	rs1765139	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p14.1	NA	rs1765139-T	0.7689	5E-14		0.0155	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
816	chr11	30355706	30355707	rs11031051	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p14.1	ARL14EP	rs11031051-A	0.6856	6E-13		0.1899	[0.14-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
816	chr11	30371614	30371615	rs12363432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p14.1		rs12363432-?	NR	1E-9				NR [~ 8900000] (imputed)	N
816	chr11	30372817	30372818	rs74331022	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	ARL14EP	rs74331022-C	0.84698	6E-16		0.0207472	[0.016-0.026] unit increase	NR [13737936] (imputed)	N
816	chr11	30372817	30372818	rs74331022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs74331022-?	NR	2E-13				NR [~ 8900000] (imputed)	N
816	chr11	30376313	30376314	rs76959488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11p14.1		rs76959488-A	NR	1E-10		0.0905	[0.063-0.118] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
816	chr11	30378558	30378559	rs1765142	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p14.1	NR	rs1765142-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
816	chr11	30382898	30382899	rs12294104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11p14.1	NR	rs12294104-T	0.17341499999999999	9E-9		0.00933327	[0.006-0.0127] unit increase	Affymetrix [16578495] (imputed)	N
816	chr11	30382898	30382899	rs12294104	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	11p14.1	NR	rs12294104-?	NR	6E-7	(LH)			Illumina [7879351] (imputed)	N
816	chr11	30382898	30382899	rs12294104	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	11p14.1	NR	rs12294104-?	NR	3E-7	(FSH)			Illumina [7879351] (imputed)	N
816	chr11	30382898	30382899	rs12294104	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	11p14.1	intergenic	rs12294104-T	0.172	1E-11		0.225	[0.16-0.29] years increase	Affymetrix, Illumina [2551160] (imputed)	N
816	chr11	30393359	30393360	rs640245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p14.1	RP4-710M3.1	rs640245-T	NR	5E-9		0.0165184	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
816	chr11	30393359	30393360	rs640245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11p14.1		rs640245-?	NR	2E-9				NR [~ 8900000] (imputed)	N
816	chr11	30394733	30394734	rs2183848	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p14.1		rs2183848-A	0.2796	3E-11		0.15428782	[0.11-0.2] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
816	chr11	30394733	30394734	rs2183848	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p14.1		rs2183848-A	0.2796	1E-15		0.13360807	[0.099-0.168] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
816	chr11	30402330	30402330	rs36082910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p14.1	MPPED2	rs36082910-AT	NR	1E-8		0.0164798	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
816	chr11	30405913	30405914	rs621421	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11p14.1	ARL14EP, MPPED2	rs621421-C	0.37439999999999996	2E-14		1.0277493		Affymetrix [11880941] (imputed)	N
816	chr11	30405913	30405914	rs621421	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p14.1	ARL14EP, MPPED2	rs621421-C	0.37439999999999996	2E-14		1.0276761		Affymetrix [11880941] (imputed)	N
816	chr11	30408060	30408061	rs640494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p14.1		rs640494-A	NR	4E-18		0.0178	[0.014-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
816	chr11	30408551	30408552	rs12799529	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p14.1		rs12799529-T	0.7583	5E-13		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
817	chr11	30415775	30415776	rs1717776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p14.1		rs1717776-G	NR	2E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
817	chr11	30422067	30422068	rs2065418	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p14.1	NA	rs2065418-T	0.646	6E-15		0.0139	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
817	chr11	30430330	30430331	rs7941828	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11p14.1	MPPED2	rs7941828-T	0.3396	4E-8		5.483	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
817	chr11	30430331	30430332	rs7942037	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs7942037-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
817	chr11	30430331	30430332	rs7942037	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p14.1	NR	rs7942037-C	0.3596	6E-11		0.016889174	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
817	chr11	30430331	30430332	rs7942037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p14.1		rs7942037-?	NR	3E-18				NR [~ 8900000] (imputed)	N
817	chr11	30432175	30432176	rs553951	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11p14.1	MPPED2	rs553951-C	0.73	4E-8		0.39	[0.25-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
817	chr11	30432175	30432176	rs553951	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	11p14.1	MPPED2	rs553951-C	0.7344	5E-8		0.4102	[0.26-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
817	chr11	30432219	30432220	rs13642	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p14.1	NA	rs13642-A	0.6452	9E-10		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
817	chr11	30435050	30435051	rs567056	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p14.1	MPPED2	rs567056-G	0.616495	7E-9		0.0113638	[0.0075-0.0152] unit increase	Affymetrix [NR] (imputed)	N
817	chr11	30435584	30435585	rs2282300	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	11p14.1	NR	rs2282300-?	NR	2E-6				Illumina [7427422] (imputed)	N
817	chr11	30437980	30437981	rs12806743	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p14.1	NR	rs12806743-T	0.24	1E-12		0.0157	[0.011-0.02] unit decrease	NR [NR]	N
817	chr11	30447997	30447998	rs704660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p14.1		rs704660-T	NR	7E-19		0.012	[0.0095-0.0145] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
817	chr11	30447997	30447998	rs704660	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p14.1	MPPED2	rs704660-T	0.4095	2E-15		0.0153	[0.012-0.019] unit increase	Affymetrix [18391927] (imputed)	N
817	chr11	30447997	30447998	rs704660	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11p14.1	MPPED2	rs704660-T	0.4044	3E-9		0.011755997	[0.0079-0.0156] unit increase	Illumina [9339358] (imputed)	N
817	chr11	30447997	30447998	rs704660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p14.1		rs704660-?	NR	4E-29				NR [~ 8900000] (imputed)	N
817	chr11	30467499	30467500	rs11031093	21940522	Shaffer JR	2011-09-21	J Dent Res	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	11p14.1	MPPED2	rs11031093-?	NR	8E-6		1.36	[-0.73720-3.45720]	Illumina [1450678] (imputed)	N
817	chr11	30478523	30478524	rs536007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p14.1	NR	rs536007-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
817	chr11	30492069	30492070	rs11031105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11p14.1	MPPED2	rs11031105-G	NR	2E-9		0.018124	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
817	chr11	30492580	30492581	rs494221	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	11p14.1	MPPED2	rs494221-A	0.03	3E-7		1.02	[1.01-1.03]	Affymetrix [7745390] (imputed)	N
817	chr11	30502174	30502175	rs10488821	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	11p14.1	NR	rs10488821-?	NR	8E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
817	chr11	30504659	30504660	rs499293	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p14.1	MPPED2	rs499293-G	0.34193	2E-8		0.0118005	[0.0077-0.0159] unit increase	Affymetrix [NR] (imputed)	N
817	chr11	30508107	30508108	rs545610	21940522	Shaffer JR	2011-09-21	J Dent Res	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	11p14.1	intergenic	rs545610-?	NR	9E-6		1.34	[-0.75720-3.43720]	Illumina [1450678] (imputed)	N
817	chr11	30516495	30516496	rs544625	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p14.1	MPPED2	rs544625-A	0.6674	1E-10		0.1805	[0.13-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
817	chr11	30517995	30517996	rs1458727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p14.1		rs1458727-T	NR	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
817	chr11	30517995	30517996	rs1458727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p14.1		rs1458727-T	NR	1E-11		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
817	chr11	30533621	30533622	rs546240	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p14.1	NR	rs546240-?	NR	4E-10				NR [up to 7000000]	N
817	chr11	30533621	30533622	rs546240	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11p14.1	NR	rs546240-?	NR	3E-14				NR [up to 7000000]	N
817	chr11	30533621	30533622	rs546240	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11p14.1	MPPED2	rs546240-C	0.380037	3E-8		0.0119372	[0.0077-0.0161] unit increase	Affymetrix [NR] (imputed)	N
818	chr11	30547437	30547438	rs11031122	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	11p14.1	MPPED2	rs11031122-C	0.24	4E-8		1.04	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
818	chr11	30564576	30564577	rs7121800	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	11p14.1	MPPED2	rs7121800-T	0.3458	7E-6		0.7138	[NR] unit increase	Illumina [1216074] (imputed)	N
818	chr11	30565143	30565144	rs490445	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p14.1	MPPED2	rs490445-C	0.42422	4E-8		0.043681417	[0.028-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
818	chr11	30571346	30571347	rs10767859	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	11p14.1	NR	rs10767859-T	0.31	6E-6		0.2315	[0.13-0.33] unit increase	Illumina [up to 730525]	N
818	chr11	30599744	30599745	rs3824982	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11p14.1		rs3824982-T	0.24127	3E-6		0.036415	[0.021-0.052] unit increase	Affymetrix [15580782] (imputed)	N
818	chr11	30602280	30602281	rs7124942	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p14.1		rs7124942-G	0.15	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
818	chr11	30602280	30602281	rs7124942	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p14.1		rs7124942-G	0.15	4E-15		7.84	z score increase	Affymetrix [9061022] (imputed)	N
818	chr11	30602280	30602281	rs7124942	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p14.1	NR	rs7124942-G	0.1646	8E-11				NR [9056863] (imputed)	N
818	chr11	30605858	30605859	rs7930738	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11p14.1	MPPED2	rs7930738-C	0.816	5E-7		0.431	[0.17-0.69] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
818	chr11	30608452	30608453	rs294381	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	11p14.1	MPPED2	rs294381-T	0.2806	1E-14		0.01928015	[0.014-0.024] unit increase	Affymetrix [11514463] (imputed)	N
818	chr11	30613012	30613013	rs10835689	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	11p14.1	MPPED2	rs10835689-?		9E-7	(AA)	0.178	[-0.01016-0.36616] unit increase	Affymetrix, Illumina [NR] (imputed)	N
818	chr11	30620261	30620262	rs10835690	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p14.1	NR	rs10835690-T	0.822	2E-8		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
818	chr11	30650648	30650649	rs10767869	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11p14.1	DCDC5	rs10767869-A	0.3187	1E-10		0.013414608	[0.0093-0.0175] unit increase	Illumina [9339358] (imputed)	N
818	chr11	30667402	30667403	rs10835696	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	DCDC5	rs10835696-A	0.702	2E-13		0.0095	[0.007-0.012] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
819	chr11	30718533	30718534	rs148185902	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11p14.1	MPPED2	rs148185902-A	0.0116	6E-8		0.122789	[0.078-0.167] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
819	chr11	30738395	30738396	rs76951	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11p14.1	NR	rs76951-T	0.073	1E-6	(IFNalpha_STAT1_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	5E-43		0.0245	[0.021-0.028] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	11p14.1		rs963837-C	0.353175	5E-9		0.0216113	[0.014-0.029] unit decrease	Illumina [13475706] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	4E-86		0.0322	[0.029-0.035] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11p14.1		rs963837-C	0.353156	4E-27		0.032662	[0.027-0.039] unit decrease	Illumina [13478778] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	2E-30		0.02	[0.017-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	5E-29		0.0184	[0.015-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	4E-28		0.0185	[0.015-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p14.1		rs963837-C	NR	3E-79		0.0365	[0.033-0.04] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
819	chr11	30749089	30749090	rs963837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	11p14.1		rs963837-C	0.353189	1E-32		0.0425954	[0.036-0.05] unit decrease	Illumina [13478792] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	5E-53		0.0368	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	5E-37		0.0306	[0.026-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	2E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	1E-63		0.0404	[0.036-0.045] unit increase	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	5E-58		0.0386	[0.034-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	NR	1E-65		0.0411	[0.036-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30749089	30749090	rs963837	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	11p14.1		rs963837-?	NR	9E-7		0.42330417	[0.25-0.59] ml/min/1.73 m2 increase	NR [43622178]	N
819	chr11	30749089	30749090	rs963837	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p14.1	NR	rs963837-T	0.55	5E-40		0.0243	[0.021-0.028] unit increase	NR [NR]	N
819	chr11	30749089	30749090	rs963837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p14.1		rs963837-C	0.452901	6E-48		0.03310189	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
819	chr11	30749089	30749090	rs963837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p14.1		rs963837-C	0.452886	8E-48		0.033137113	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
819	chr11	30749089	30749090	rs963837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p14.1		rs963837-C	0.452903	5E-47		0.03283537	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
819	chr11	30749089	30749090	rs963837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p14.1	NR	rs963837-C	0.420622	8E-33				Affymetrix, Illumina [24332387] (imputed)	N
819	chr11	30749089	30749090	rs963837	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p14.1	DCDC1	rs963837-T	0.654	2E-9	(East Asian)	0.0398	[0.027-0.053] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
819	chr11	30749089	30749090	rs963837	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p14.1	DCDC1	rs963837-T	0.5916	5E-25		0.0343	[0.028-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
819	chr11	30749089	30749090	rs963837	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11p14.1	NR	rs963837-T	0.4114	4E-11	(women)	0.0316	[0.022-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
819	chr11	30749089	30749090	rs963837	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11p14.1	NR	rs963837-T	0.3989	3E-8	(men)	0.0294	[0.019-0.04] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
819	chr11	30749089	30749090	rs963837	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	11p14.1	DCDC5	rs963837-T	0.575	2E-27		0.601	[0.49-0.71] unit decrease	Affymetrix [NR] (imputed)	N
819	chr11	30749089	30749090	rs963837	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	11p14.1	DCDC5	rs963837-T	0.584	1E-21		0.907	[0.72-1.09] unit decrease	Affymetrix [NR] (imputed)	N
819	chr11	30749089	30749090	rs963837	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11p14.1	DCDC5	rs963837-T	0.573	7E-62		0.0057	[0.0051-0.0063] unit decrease	Affymetrix [NR] (imputed)	N
819	chr11	30749089	30749090	rs963837	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11p14.1	DCDC5	rs963837-T	0.5506	2E-54	(EA)	0.0055	[0.0047-0.0063] unit decrease	Affymetrix [NR] (imputed)	N
819	chr11	30749089	30749090	rs963837	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p14.1	DCDC1	rs963837-T	0.5728	3E-115		0.0057	[0.0051-0.0063] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
819	chr11	30749089	30749090	rs963837	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11p14.1	DCDC1	rs963837-T	0.6505	8E-18		0.0065	[0.0049-0.0081] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
819	chr11	30749089	30749090	rs963837	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11p14.1	DCDC1	rs963837-T	0.57	2E-21		1.0838	[1.0661-1.1018]	Affymetrix, Illumina [9585923] (imputed)	N
819	chr11	30749089	30749090	rs963837	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	11p14.1	DCDC5, MPPED2	rs963837-C	0.3738	2E-43		13.835	NR z score increase	Illumina [26237160] (imputed)	N
819	chr11	30749089	30749090	rs963837	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	11p14.1	MPPED2, DCDC1	rs963837-T	0.525	8E-7	(EA)	0.019285714	[0.012-0.027] unit increase	Illumina [1986983] (imputed)	N
819	chr11	30749089	30749090	rs963837	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	11p14.1	MPPED2, DCDC1	rs963837-T	0.656	8E-10	(Japanese)	0.028	[0.018-0.038] unit increase	Illumina [5864938] (imputed)	N
819	chr11	30749089	30749090	rs963837	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11p14.1	MPPED2	rs963837-?	NR	9E-36				Affymetrix, Illumina [at least 5248638] (imputed)	N
819	chr11	30749089	30749090	rs963837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p14.1		rs963837-?	NR	7E-8				NR [~ 8900000] (imputed)	N
819	chr11	30749089	30749090	rs963837	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11p14.1	MPPED2, DCDC5	rs963837-?	NR	1E-8		0.02785	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
819	chr11	30749089	30749090	rs963837	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11p14.1	MPPED2, DCDC5	rs963837-?	NR	8E-22		0.04147	[0.033-0.05] unit increase novel	Illumina [6108953] (imputed)	N
819	chr11	30749089	30749090	rs963837	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11p14.1	MPPED2, DCDC5	rs963837-?	NR	3E-21		0.03989	[0.032-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
819	chr11	30749089	30749090	rs963837	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	11p14.1	MPPED2, DCDC5	rs963837-?	NR	2E-26		0.04352	[0.035-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
819	chr11	30749089	30749090	rs963837	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	11p14.1	DCDC5, MPPED2	rs963837-T	NR	4E-9		0.685	[0.46-0.91] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
819	chr11	30749089	30749090	rs963837	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	11p14.1	MPPED2	rs963837-T	0.54	6E-18	(EA)	0.0078	[0.006-0.0096] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
819	chr11	30749089	30749090	rs963837	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	11p14.1	MPPED2	rs963837-T	0.54	9E-8		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
819	chr11	30749089	30749090	rs963837	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	11p14.1	DCDC5, MPPED2	rs963837-T	0.64	3E-9		0.0037	[0.0025-0.0049] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
819	chr11	30749089	30749090	rs963837	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	11p14.1	DCDC5, MPPED2	rs963837-T	0.64	1E-9		0.0043	[0.0029-0.0057] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
819	chr11	30749168	30749169	rs369062552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p14.1	NR	rs369062552-C	0.0387686	4E-36				Affymetrix, Illumina [24653286] (imputed)	N
819	chr11	30749171	30749194	rs775701197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p14.1		rs775701197-G	0.040779	3E-43		0.08094355	[0.069-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr11	30749171	30749194	rs775701197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p14.1		rs775701197-G	0.040789	1E-50		0.08806349	[0.077-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr11	30749171	30749194	rs775701197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p14.1		rs775701197-G	0.040787	9E-53		0.08991452	[0.078-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr11	30754836	30754837	rs55733296	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p14.1		rs55733296-G	0.961195	4E-19		0.0819031	[0.064-0.1] unit decrease	NR [11722792] (imputed)	N
819	chr11	30754836	30754837	rs55733296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	NR	6E-50		0.0935	[0.081-0.106] unit increase	Affymetrix [9000000] (imputed)	N
819	chr11	30754836	30754837	rs55733296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	NR	1E-29		0.071	[0.059-0.083] unit increase	Affymetrix [9000000] (imputed)	N
819	chr11	30754836	30754837	rs55733296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	NR	2E-50		0.0938	[0.081-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr11	30754836	30754837	rs55733296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	NR	3E-49		0.0928	[0.08-0.105] unit increase	Affymetrix [9000000] (imputed)	N
819	chr11	30754836	30754837	rs55733296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	NR	8E-52		0.0952	[0.083-0.108] unit increase	Affymetrix [9000000] (imputed)	N
819	chr11	30754836	30754837	rs55733296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p14.1	NR	rs55733296-A	0.0368232	4E-40				Affymetrix, Illumina [24558453] (imputed)	N
819	chr11	30754836	30754837	rs55733296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p14.1	NR	rs55733296-A	0.038159	4E-41		0.065219	[0.056-0.075] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
819	chr11	30756878	30756879	rs601676	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p14.1	DCDC5	rs601676-A	0.569	9E-9		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
819	chr11	30759781	30759781	rs542695580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p14.1		rs542695580-C,rs542695580-C	0.628965	1E-14		0.0297489	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
819	chr11	30759781	30759781	rs542695580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11p14.1		rs542695580-C,rs542695580-C	0.628965	1E-14		0.0297489	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
819	chr11	30760334	30760335	rs3925584	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p14.1		rs3925584-T	0.5494	6E-13		0.15926233	[0.12-0.2] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
819	chr11	30760334	30760335	rs3925584	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p14.1		rs3925584-T	0.5497	1E-11		0.094707735	[0.068-0.122] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
819	chr11	30760334	30760335	rs3925584	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11p14.1	DCDC1	rs3925584-T	0.5522	2E-15		0.030389	[0.023-0.038] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
819	chr11	30760334	30760335	rs3925584	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p14.1	DCDC1	rs3925584-T	0.549	1E-91		0.0055	[0.0049-0.0061] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
819	chr11	30760334	30760335	rs3925584	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11p14.1	DCDC1	rs3925584-T	0.5968	8E-50		0.0104	[0.009-0.0118] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
819	chr11	30760334	30760335	rs3925584	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	11p14.1	RP5-1024C24.1, DCDC1	rs3925584-C	0.441932	2E-9		0.03693	[0.026-0.048] unit decrease	Illumina [24961484] (imputed)	N
819	chr11	30760334	30760335	rs3925584	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		11p14.1	MPPED2	rs3925584-T	NR	2E-16		0.0079	[0.0061-0.0097] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
819	chr11	30760334	30760335	rs3925584	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	11p14.1	MPPED2	rs3925584-T	NR	5E-16		0.0074	[0.0056-0.0092] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
819	chr11	30760334	30760335	rs3925584	22479191	Pattaro C	2012-03-29	PLoS Genet	Genome-wide association and functional follow-up reveals new loci for kidney function.	Chronic kidney disease	74,354  European ancestry individuals	56,246 European ancestry individuals	11p14.1	MPPED2	rs3925584-?	NR	8E-18		0.0075	[0.0057-0.0093] ml/min/1.73m^2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
819	chr11	30760334	30760335	rs3925584	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	11p14.1	DCDC5	rs3925584-C	0.45	5E-16		0.01	[0.004-0.008] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
819	chr11	30768677	30768678	rs10767873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p14.1		rs10767873-?	NR	2E-32				NR [~ 8900000] (imputed)	N
819	chr11	30768677	30768678	rs10767873	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	11p14.1	DCDC5, MPPED2l	rs10767873-C	0.69	5E-16		0.0068	[0.0052-0.0084] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
819	chr11	30774279	30774280	rs11031191	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	11p14.1	NR	rs11031191-T	0.35	1E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
819	chr11	30774524	30774525	rs795230	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Urea levels	20,700 European ancestry individuals	NA	11p14.1	RP5-1024C24.1, DCDC1	rs795230-T	0.447805	5E-8		0.058577	[0.038-0.079] unit increase	Illumina [24961484] (imputed)	N
819	chr11	30774524	30774525	rs795230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p14.1		rs795230-T	0.4283	1E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
819	chr11	30774524	30774525	rs795230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p14.1	Intergenic	rs795230-T	0.4283	7E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
819	chr11	30787950	30787951	rs750350777	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	11p14.1	DCDC1	rs750350777-A	0.0014	8E-6		2.0681	[1.16-2.98] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
820	chr11	30804995	30804996	rs4439488	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p14.1		rs4439488-C	0.3	5E-21		9.41	z score increase	Affymetrix [9061022] (imputed)	N
820	chr11	30810664	30810665	rs927224	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p14.1	NR	rs927224-C	0.3246	2E-16				NR [9056863] (imputed)	N
820	chr11	30819810	30819811	rs2022130	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11p14.1	NR	rs2022130-T	0.6824	3E-14	(Lingual)	14.231549	[10.56-17.9] unit increase	Affymetrix, Illumina [NR]	N
820	chr11	30848413	30848413	rs111999002	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	11p14.1		rs111999002-C	0.547089	2E-8		0.0237216	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
820	chr11	30848413	30848413	rs111999002	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	11p14.1		rs111999002-C	0.547093	2E-8		0.0235593	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
820	chr11	30852055	30852056	rs620339	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	11p14.1		rs620339-C	0.424652	2E-8		0.0386461	[0.025-0.052] increase	Affymetrix [NR]	N
820	chr11	30852055	30852056	rs620339	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	11p14.1	MPPED2, DCDC5	rs620339-T	0.592561	8E-8		0.0299	[0.018-0.042] unit decrease	Illumina [1220000] (imputed)	N
820	chr11	30861471	30861472	rs808471	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	11p14.1	DCDC1	rs808471-?	NR	2E-11	(EA)	0.0945	[0.067-0.122] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
820	chr11	30864318	30864319	rs273558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p14.1	NR	rs273558-A	0.671241	2E-32		0.024489	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
820	chr11	30876112	30876113	rs273594	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	11p14.1	DCDC5	rs273594-?		4E-13	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
820	chr11	30876112	30876113	rs273594	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p14.1	DCDC5	rs273594-G	0.328517	6E-14		0.0147345	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
820	chr11	30877923	30877924	rs382603	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs382603-?	NR	4E-12		0.013753	[0.0094-0.0181] unit increase	Affymetrix [20259828] (imputed)	N
820	chr11	30878011	30878012	rs273593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p14.1		rs273593-?	NR	3E-9				NR [~ 8900000] (imputed)	N
820	chr11	30878848	30878849	rs273592	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p14.1		rs273592-T	0.6741	9E-10		0.087349966	[0.058-0.116] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
820	chr11	30892823	30892824	rs1448938	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11p14.1	NR	rs1448938-A	0.4171	4E-15		1.017	[1.013-1.022]	NR [8098588] (imputed)	N
820	chr11	30892823	30892824	rs1448938	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	11p14.1	NR	rs1448938-?		2E-6	(genus_Lachnobacterium)	0.9033492	[0.55-1.26] unit decrease	Affymetrix [211319]	N
820	chr11	30903441	30903442	rs662735	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11p14.1	DCDC5	rs662735-T		7E-20		0.025	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
820	chr11	30903441	30903442	rs662735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11p14.1	DCDC1	rs662735-A	0.8034	2E-10		0.02865326	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
820	chr11	30903441	30903442	rs662735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11p14.1	DCDC1	rs662735-A	0.8034	2E-11		0.02981373	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
820	chr11	30910990	30910991	rs273573	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p14.1	NR	rs273573-A	0.3176	2E-8		0.0342	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
821	chr11	30934690	30934691	rs10835721	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11p14.1	DCDC5	rs10835721-G	0.73	3E-8		0.00548	[0.0035-0.0074] unit decrease	Affymetrix [at least 8002429] (imputed)	N
821	chr11	30945163	30945164	rs291163	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	11p14.1		rs291163-A	0.450998	1E-8		0.0428455	[0.028-0.058] increase	Affymetrix [NR]	N
821	chr11	30945756	30945757	rs163884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11p14.1	NR	rs163884-A	NR	4E-9		0.0186	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr11	30945756	30945757	rs163884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs163884-A	NR	3E-10		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
821	chr11	30945756	30945757	rs163884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p14.1	NR	rs163884-A	NR	4E-11		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr11	30945756	30945757	rs163884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p14.1	NR	rs163884-A	NR	1E-10		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr11	30951673	30951674	rs163879	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p14.1	DCDC5	rs163879-T	0.68	2E-11		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
821	chr11	30962963	30962964	rs158629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p14.1		rs158629-?	NR	1E-11		0.013512	[0.0092-0.0179] unit increase	Affymetrix [20259828] (imputed)	N
821	chr11	30975625	30975626	rs1848393	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11p14.1		rs1848393-?	NR	4E-10		0.0192	unit decrease	NR [NR]	N
821	chr11	31009087	31009088	rs1848395	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p14.1	NR	rs1848395-C	NR	6E-10		0.0311	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr11	31010454	31010455	rs9667150	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	11p14.1	DCDC1	rs9667150-?	NR	2E-8	(EA)	0.0741	[0.048-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
821	chr11	31048682	31048683	rs1321958	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p13	DCDC1	rs1321958-?	NR	8E-6	(betaine)	0.15249005	[0.086-0.219] unit increase	Affymetrix [at least 2500000] (imputed)	N
822	chr11	31065370	31065370	rs372264773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p13		rs372264773-CT	NR	5E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
822	chr11	31065370	31065370	rs372264773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p13		rs372264773-CT	NR	9E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
822	chr11	31084513	31084514	rs704686	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p13		rs704686-C	0.511	6E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
822	chr11	31090389	31090390	rs1964699	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p13	DCDC1, DNAJC24	rs1964699-?		2E-9				NR [7428630] (imputed)	N
822	chr11	31106724	31106725	rs619745	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p13	NA	rs619745-T		5E-12		0.0127706	[0.0091-0.0164] unit decrease	Illumina [13288253] (imputed)	N
822	chr11	31111809	31111810	rs919045	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11p13	DCDC1	rs919045-T	0.6289	3E-11		0.1193	[0.084-0.154] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
822	chr11	31128151	31128152	rs208079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p13		rs208079-?	NR	5E-15				NR [~ 8900000] (imputed)	N
822	chr11	31190098	31190099	rs208091	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p13		rs208091-C	0.34	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
823	chr11	31210770	31210771	rs16921914	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	11p13	DCDC5	rs16921914-A	0.27	2E-9		0.08	[0.05-0.11] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
823	chr11	31231533	31231534	rs2774406	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			DCDC1	rs2774406-C	0.3858	7E-17		0.0703754	[0.054-0.087] unit increase	Affymetrix [8165723] (imputed)	N
823	chr11	31271965	31271966	rs61879863	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11p13	NR	rs61879863-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
823	chr11	31285283	31285284	rs11602582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p13	NR	rs11602582-A	NR	4E-11		0.0376	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
823	chr11	31285283	31285284	rs11602582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p13	NR	rs11602582-A	NR	3E-12		0.0398	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
823	chr11	31285283	31285284	rs11602582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11p13	NR	rs11602582-A	NR	2E-11		0.0382	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
823	chr11	31285283	31285284	rs11602582	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	11p13	DCDC1	rs11602582-A	0.05	4E-15		0.04	unit decrease	Affymetrix [8928767] (imputed)	N
823	chr11	31311428	31311429	rs2761589	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	11p13	DCDC1	rs2761589-C	0.370028	3E-12	(EA)	0.00897032	[0.0065-0.0115] unit decrease	Affymetrix [~ 8800000] (imputed)	N
824	chr11	31335423	31335424	rs10128753	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p13	NR	rs10128753-A	0.386	3E-8		0.0124742	[0.0081-0.0169] unit decrease	NR [9732723] (imputed)	N
824	chr11	31402162	31402163	rs1451050	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p13	NR	rs1451050-?	NR	1E-7				Affymetrix [NR]	N
824	chr11	31405358	31405359	rs17248764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p13	NR	rs17248764-G	NR	3E-9		0.0249	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
824	chr11	31409437	31409438	rs542340	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	11p13	DNAJC24	rs542340-G	0.018	8E-9	(AA)	1.95	[1.55-2.44]	Affymetrix [up to 15784307] (imputed)	N
824	chr11	31418601	31418602	rs7129979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p13		rs7129979-T	NR	2E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
824	chr11	31424822	31424823	rs6484504	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p13	DNAJC24	rs6484504-T	0.3053	9E-19		0.0026	[0.002-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
824	chr11	31424822	31424823	rs6484504	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p13	DNAJC24	rs6484504-T	0.2756	8E-21		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
824	chr11	31424822	31424823	rs6484504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p13		rs6484504-?	NR	4E-10				NR [~ 8900000] (imputed)	N
824	chr11	31424822	31424823	rs6484504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11p13	DNAJC24	rs6484504-C	0.725	9E-13		0.02853268	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr11	31437136	31437137	rs17705427	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p13		rs17705427-G	0.31314	8E-6		0.032839	[0.018-0.047] unit decrease	Affymetrix [15580782] (imputed)	N
825	chr11	31472757	31472758	rs1223117	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	11p13	IMMP1L	rs1223117-T	0.239	8E-11		0.03	[0.02-0.04] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
825	chr11	31499704	31499705	rs1223090	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11p13	NR	rs1223090-A	0.5644	9E-14	(Pericalcarine)	7.7213345	[5.69-9.75] unit increase	Affymetrix, Illumina [NR]	N
825	chr11	31523129	31523130	rs1223114	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	11p13	NR	rs1223114-A	0.39	2E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
825	chr11	31525711	31525712	rs61878480	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11p13	IMMP1L	rs61878480-?	NR	5E-12		0.5365	[0.39-0.68] unit increase	Affymetrix [11100000] (imputed)	N
825	chr11	31532958	31532959	rs555091	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	11p13	ELP4	rs555091-C	0.018	2E-8	(AA)	1.92	[1.53-2.41]	Affymetrix [up to 15784307] (imputed)	N
825	chr11	31544586	31544586	rs369793709	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p13		rs369793709-AT	0.30581	3E-6		0.034512	[0.02-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
825	chr11	31554963	31554964	rs2984814	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	11p13	NR	rs2984814-T	0.325	2E-6			NR	Illumina [7289516] (imputed)	N
825	chr11	31554963	31554964	rs2984814	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	11p13	NR	rs2984814-T	0.325	2E-6		0.755	[0.67-0.85]	Illumina [7289516] (imputed)	N
826	chr11	31599909	31599910	rs7952509	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11p13	ELP4	rs7952509-C	0.77	3E-10		0.0064	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
826	chr11	31599909	31599910	rs7952509	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11p13	ELP4	rs7952509-C	0.77	6E-7		0.0055	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
826	chr11	31663881	31663882	rs11031436	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	11p13	ELP4	rs11031436-T	0.22	6E-10		0.033	[0.023-0.043] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
826	chr11	31663881	31663882	rs11031436	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	11p13	ELP4	rs11031436-T	0.22	2E-6	(EA)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
826	chr11	31683484	31683485	rs7482884	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	11p13	ELP4	rs7482884-A	0.23	4E-25		0.02	unit increase	Affymetrix [8928767] (imputed)	N
827	chr11	31740988	31740989	rs1984389	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	11p13	ELP4, Z83001.1	rs1984389-C	0.54	2E-8		0.0060348	[0.0039-0.0082] unit decrease	NR [16367095] (imputed)	N
827	chr11	31807523	31807524	rs3026401	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p13	NR	rs3026401-C	NR	4E-11		0.01945	[0.014-0.025] unit increase	Affymetrix [10847151] (imputed)	N
827	chr11	31807523	31807524	rs3026401	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	11p13	PAX6	rs3026401-T	0.218405	1E-9		6.05	z score decrease	NR [~ 10847151] (imputed)	N
827	chr11	31807523	31807524	rs3026401	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p13	PAX6	rs3026401-T	0.81	1E-8		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
827	chr11	31808279	31808280	rs608293	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA		NR	rs608293-T	NR	2E-11		6.676	z score decrease	Affymetrix [10847151] (imputed)	N
827	chr11	31809321	31809322	rs12421026	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p13		rs12421026-?	NR	4E-8				NR [NR]	N
827	chr11	31809321	31809322	rs12421026	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p13	NR	rs12421026-C	0.4938	6E-6		0.0154	[0.0085-0.0223] unit increase	Illumina [NR] (imputed)	N
827	chr11	31810297	31810298	rs1506	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p13	NR	rs1506-A	0.806139291279333	3E-8		0.01031519	[0.0067-0.014] unit decrease	NR [NR]	N
827	chr11	31810297	31810298	rs1506	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11p13	NR	rs1506-A	0.806139291279333	4E-10		0.011160127	[0.0077-0.0147] unit decrease	NR [NR]	N
827	chr11	31812214	31812215	rs3026393	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p13	NR	rs3026393-A	NR	7E-9		5.803	z score increase	Affymetrix [10847151] (imputed)	N
827	chr11	31812581	31812582	rs2071754	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11p13	NR	rs2071754-C	0.201	4E-11		0.01262	[0.0089-0.0164] unit increase	NR [8968716] (imputed)	N
827	chr11	31812581	31812582	rs2071754	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p13	PAX6	rs2071754-C	NR	1E-10		0.011488	[0.008-0.015] unit decrease	Affymetrix [18485882] (imputed)	N
827	chr11	31812581	31812582	rs2071754	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p13	NR	rs2071754-T	0.805485004845094	3E-13		0.0140185775	[0.01-0.018] unit decrease	NR [NR]	N
827	chr11	31812581	31812582	rs2071754	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p13	NR	rs2071754-T	0.805485004845094	3E-13		0.008886588	[0.0065-0.0113] unit decrease	NR [NR]	N
827	chr11	31812581	31812582	rs2071754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p13		rs2071754-?	NR	9E-13				NR [~ 8900000] (imputed)	N
827	chr11	31813528	31813529	rs3026389	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p13	PAX6	rs3026389-C	0.211118	7E-10		6.18	z score increase	NR [10847151] (imputed)	N
827	chr11	31813528	31813529	rs3026389	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	11p13	PAX6	rs3026389-C	0.211118	3E-9		5.925	unit increase	NR [10847151] (imputed)	N
827	chr11	31815895	31815896	rs2239789	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p13		rs2239789-?	NR	5E-8				NR [NR]	N
827	chr11	31821466	31821467	rs61879810	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p13	PAX6	rs61879810-A		7E-8		0.285	unit increase	Affymetrix [at least 2696785] (imputed)	N
827	chr11	31821466	31821467	rs61879810	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p13	PAX6	rs61879810-A		3E-6		0.225	unit increase	Affymetrix [at least 2696785] (imputed)	N
827	chr11	31821466	31821467	rs61879810	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p13	PAX6	rs61879810-A		1E-9		0.198	unit increase	Affymetrix [at least 2696785] (imputed)	N
827	chr11	31825517	31825518	rs694617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p13		rs694617-?	NR	4E-10				NR [~ 8900000] (imputed)	N
827	chr11	31839181	31839182	rs7936522	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p13	RCN1, PAX6	rs7936522-C	NR	9E-9		0.0099552	[0.0066-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
827	chr11	31850104	31850105	rs1806153	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11p13		rs1806153-?	NR	2E-17		0.0276	unit increase	NR [NR]	N
827	chr11	31850104	31850105	rs1806153	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11p13	NR	rs1806153-T	NR	3E-9		1.03	[1.02-1.04]	NR [NR] (imputed)	N
827	chr11	31850104	31850105	rs1806153	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11p13	PAX6, ELP4	rs1806153-?		1E-9				NR [6786993] (imputed)	N
827	chr11	31850104	31850105	rs1806153	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	11p13		rs1806153-T	0.213	4E-8		0.057	[0.037-0.077] unit increase	Illumina [NR] (imputed)	N
827	chr11	31850104	31850105	rs1806153	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p13	NR	rs1806153-T	0.221297548501803	5E-14		0.00832163	[0.0062-0.0105] unit increase	NR [NR]	N
827	chr11	31850104	31850105	rs1806153	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p13	NR	rs1806153-T	NR	5E-13		7.233	z score increase	Affymetrix [10847151] (imputed)	N
827	chr11	31850104	31850105	rs1806153	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	11p13	DKFZp686K1684, PAUPAR, ELP4, PAX6	rs1806153-T	0.22	1E-9		1.04	[1.03-1.05]	NR [9622763] (imputed)	N
827	chr11	31850104	31850105	rs1806153	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	11p13	NR	rs1806153-T	0.227	9E-9		0.0196	[0.013-0.026] unit increase	Illumina [NR] (imputed)	N
827	chr11	31850104	31850105	rs1806153	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	11p13	NR	rs1806153-T	0.2247	3E-10		0.0165	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
827	chr11	31850104	31850105	rs1806153	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	11p13	NR	rs1806153-T	0.2247	9E-9		0.017	[0.011-0.023] unit increase	Illumina [NR] (imputed)	N
827	chr11	31850104	31850105	rs1806153	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p13	intergenic	rs1806153-T	0.24291	2E-13		7.353	z score increase	Illumina [18485882] (imputed)	N
828	chr11	31851039	31851040	rs1806152	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	11p13	PAX6, RCN1	rs1806152-T	0.172277	4E-7		0.0415	[0.026-0.057] unit increase	Illumina [1220000] (imputed)	N
828	chr11	31884918	31884919	rs11031492	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	11p13	RCN1, DKFZp686K1684	rs11031492-G		4E-6		0.2196	unit increase	Illumina [5767231] (imputed)	N
828	chr11	31905533	31905534	rs652722	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals		PAX6	rs652722-C	0.61	8E-8		2.75	[1.24-4.26] % increase	Affymetrix, Illumina [2474474] (imputed)	N
828	chr11	31932050	31932051	rs797286	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	11p13	NR	rs797286-?	NR	5E-6		0.04718812	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
829	chr11	32044945	32044946	rs1506525	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Body mass index	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	1,365 Han Chinese ancestry cases, 2,854 Han Chinese ancestry controls	11p13	LOC729605, RCN1	rs1506525-G	0.33	2E-6		0.34	[0.20-0.47] kg/m2 increase	Illumina [4642479] (imputed)	N
829	chr11	32077471	32077472	rs742631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11p13	RCN1	rs742631-T	0.282131	2E-10		0.01583526	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
829	chr11	32077471	32077472	rs742631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs742631-T	0.281757	9E-12				Affymetrix, Illumina [19905671] (imputed)	N
829	chr11	32077471	32077472	rs742631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11p13	NR	rs742631-T	0.28374	5E-13		0.01662	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
829	chr11	32101280	32101281	rs477838	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p13	RCN1	rs477838-A	0.731875	2E-6	(RCN1, 9322_15_3)	0.12936233	[0.076-0.183] unit increase	Illumina [> 1000000] (imputed)	N
829	chr11	32112531	32112532	rs190104	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11p13	RCN1	rs190104-G	0.860456	4E-8		0.0165017	[0.011-0.022] unit decrease	Affymetrix [NR] (imputed)	N
829	chr11	32112567	32112568	rs223046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p13		rs223046-C	NR	1E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
830	chr11	32124977	32124978	rs4876	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	11p13	NR	rs4876-?	NR	5E-6		0.015	[0.0085-0.0215] unit decrease	Illumina [~ 7800000] (imputed)	N
830	chr11	32125854	32125855	rs223058	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p13	NA	rs223058-A	0.3349	3E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
830	chr11	32131302	32131303	rs223051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p13		rs223051-?	NR	5E-8				NR [~ 8900000] (imputed)	N
830	chr11	32153467	32153468	rs79953563	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11p13	NR	rs79953563-T	0.849602	9E-13		0.0191638	[0.014-0.024] unit decrease	Affymetrix [15000001]	N
830	chr11	32197319	32197320	rs17668735	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		THEM7P	rs17668735-?	NR	3E-10	(male)	2.66521	[NR] unit decrease	Affymetrix [NR] (imputed)	N
831	chr11	32300457	32300458	rs10767929	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	11p13	NR	rs10767929-?		4E-6	(genus_Lachnobacterium)	0.6484424	[0.39-0.91] unit decrease	Affymetrix [211319]	N
831	chr11	32327016	32327017	rs12224688	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p13		rs12224688-T	0.2405	9E-8	(conditional)	0.0242	[0.0054-0.043] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
831	chr11	32364186	32364187	rs2057178	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls, (see Thye 2010)	NA	11p13	WT1	rs2057178-?	NR	1E-12	(binary model)			Affymetrix [1009364] (imputed)	N
831	chr11	32364186	32364187	rs2057178	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11p13	WT1	rs2057178-A	0.92	3E-6		1.6129	[NR]	Affymetrix [up to 4467279] (imputed)	N
831	chr11	32364186	32364187	rs2057178	22306650	Thye T	2012-02-05	Nat Genet	Common variants at 11p13 are associated with susceptibility to tuberculosis.	Tuberculosis	1,329 African ancestry cases, 1,847 African ancestry controls	2,024 African ancestry cases, 5,154 African ancestry controls, 1,025 Indonesian ancestry cases, 983 Indonesian ancestry controls, 4,441 European ancestry cases, 5,874 European ancestry controls	11p13	WT1	rs2057178-?	NR	3E-11		1.1	[1.01-1.22] Russian samples	Affymetrix [793964]	N
831	chr11	32365429	32365430	rs11031731	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11p13	WT1	rs11031731-A	0.15803	5E-16		1.14	[1.1-1.17]	Affymetrix, Illumina [43421991] (imputed)	N
831	chr11	32367569	32367570	rs61889186	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p13	WT1	rs61889186-C	0.86	1E-25		1.12	[1.10-1.15]	Affymetrix, Illumina [8662096] (imputed)	N
831	chr11	32367569	32367570	rs61889186	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p13		rs61889186-C	0.8457	1E-25		0.1167	[0.095-0.139] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
831	chr11	32368743	32368744	rs2207548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11p13		rs2207548-A	NR	1E-23		0.1026	[0.082-0.123] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
831	chr11	32370379	32370380	rs10835889	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	11p13	WT1	rs10835889-A	0.18	1E-24		1.16	[1.13-1.19]	Affymetrix, Illumina [NR] (imputed)	N
831	chr11	32371753	32371754	rs11031736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p13		rs11031736-?	NR	1E-8				NR [~ 8900000] (imputed)	N
831	chr11	32372771	32372772	rs11031737	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11p13	WT1	rs11031737-G	0.52	5E-8		0.35	[0.23-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
831	chr11	32372771	32372772	rs11031737	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	11p13	WT1	rs11031737-G	0.5227	6E-7		0.331	[0.2-0.46] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
831	chr11	32374198	32374199	rs4922591	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	11p13	WT1	rs4922591-T	0.3867	1E-12		0.1513	[0.11-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
831	chr11	32374482	32374483	rs118072532	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7182 abundance in stool	5,959 Finnish ancestry individuals	NA	11p13		rs118072532-A	0.0170148	3E-8		0.132576	[0.086-0.18] unit increase	Illumina [7980478] (imputed)	N
832	chr11	32380520	32380521	rs7118294	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p13	WT1	rs7118294-T	0.479124	6E-12	(-28 ms)	0.0375267	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
832	chr11	32380520	32380521	rs7118294	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p13	WT1	rs7118294-T	0.479124	3E-13	(-26 ms)	0.040106	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
832	chr11	32380520	32380521	rs7118294	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p13	WT1	rs7118294-T	0.479124	2E-9	(-30 ms)	0.0331025	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
832	chr11	32387561	32387562	rs11031749	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p13	WT1	rs11031749-T	NR	3E-8		0.0215922	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
832	chr11	32387865	32387865	rs753372625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p13	WT1	rs753372625-G	NR	5E-8		0.0218504	[0.014-0.03] unit decrease	Affymetrix [127266] (imputed)	N
832	chr11	32405354	32405355	rs12574749	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11p13		rs12574749-A	0.278	5E-9		0.09963391	[0.065-0.134] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
832	chr11	32405354	32405355	rs12574749	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11p13	WT1	rs12574749-C	0.719504	1E-9		0.020571	[0.014-0.027] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
832	chr11	32410336	32410337	rs5030317	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	11p13	NR	rs5030317-C	0.29	5E-8		0.02	[0.012-0.028] z score increase	Affymetrix [up to 10400000] (imputed)	N
832	chr11	32410336	32410337	rs5030317	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11p13	WT1	rs5030317-C	0.732755	3E-9		0.017273	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
832	chr11	32415110	32415111	rs5030283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p13	WT1	rs5030283-C	0.210199	6E-12		0.018867975	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr11	32424295	32424296	rs5030241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p13		rs5030241-T	NR	4E-9		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
832	chr11	32424295	32424296	rs5030241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs5030241-T	0.342555	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
832	chr11	32428174	32428174	rs35317214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p13	WT1	rs35317214-AT	0.255148	2E-10		0.016297365	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr11	32441376	32441377	rs7115190	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p13	WT1	rs7115190-?	NR	2E-9		0.0315147	[0.021-0.042] unit increase	Illumina [4804024] (imputed)	N
832	chr11	32447346	32447347	rs7110547	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p13	WT1	rs7110547-G	0.380033	5E-10		0.050580226	[0.035-0.067] unit increase	Affymetrix [7288503] (imputed)	N
832	chr11	32447346	32447347	rs7110547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p13		rs7110547-?	NR	2E-12				NR [~ 8900000] (imputed)	N
832	chr11	32448254	32448255	rs5030179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p13		rs5030179-?	NR	6E-9				NR [~ 8900000] (imputed)	N
832	chr11	32451092	32451093	rs4986811	29253144	Voigt EA	2017-12-14	J Infect Dis	Polymorphisms in the Wilms Tumor Gene Are Associated With Interindividual Variations in Rubella Virus-Specific Cellular Immunity After Measles-Mumps-Rubella II Vaccination.	Rubella-specific interleukin-6 secretion	1,643 European ancestry individuals, 202 African American individuals	NA	11p13	WT1, WT1-AS	rs4986811-G	0.20504	5E-8				Illumina [NR] (imputed)	N
832	chr11	32451919	32451920	rs66798575	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hernia abdominopelvic cavity	6,291 European ancestry cases, 50,346 European ancestry controls	NA	11p13		rs66798575-G	0.3640348	5E-10		0.88		Affymetrix [15565029] (imputed)	N
832	chr11	32457674	32457675	rs2301254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p13	WT1-AS	rs2301254-G	NR	6E-9		0.018892	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
832	chr11	32457674	32457675	rs2301254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p13	WT1-AS	rs2301254-G	NR	8E-9		0.0187508	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
832	chr11	32458806	32458807	rs3809060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	11p13		rs3809060-T	NR	1E-27		0.1289	[0.11-0.15] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
832	chr11	32458806	32458807	rs3809060	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	11p13	WT1	rs3809060-G	0.63	8E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [37144863] (imputed)	N
832	chr11	32458806	32458807	rs3809060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p13		rs3809060-?	NR	4E-8				NR [~ 8900000] (imputed)	N
832	chr11	32458806	32458807	rs3809060	26686553	Jorgenson E	2015-12-21	Nat Commun	A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia.	Inguinal hernia	5,295 European ancestry cases, 67,510 European ancestry controls	9,701 European ancestry cases, 82,743 European ancestry controls	11p13	WT1	rs3809060-G	0.63	4E-14		1.11	[1.08-1.14]	Affymetrix [6161781] (imputed)	N
832	chr11	32460872	32460873	rs7943101	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p13	QSER1	rs7943101-T	0.1614	9E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
832	chr11	32470303	32470304	rs12292135	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p13	WT1	rs12292135-G	0.684313	2E-9		0.0126524	[0.0085-0.0168] unit increase	Affymetrix [NR] (imputed)	N
832	chr11	32474373	32474374	rs72905083	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	11p13	WT1	rs72905083-A	0.08	2E-9		1.43	[1.27 - 1.60]	Affymetrix, Illumina [6990521] (imputed)	N
832	chr11	32478965	32478966	rs7126322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	11p13		rs7126322-A	NR	1E-18		0.1357	[0.11-0.17] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
832	chr11	32478965	32478966	rs7126322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p13		rs7126322-A	NR	1E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
832	chr11	32483318	32483319	rs10835916	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11p13	WT1-AS	rs10835916-C	0.406175	1E-8		0.046684857	[0.031-0.063] unit increase	Affymetrix [7288503] (imputed)	N
832	chr11	32489663	32489664	rs10835920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11p13		rs10835920-T	NR	3E-8		0.0338	[0.022-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
832	chr11	32489663	32489664	rs10835920	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	11p13	WT1	rs10835920-T	0.38041400000000003	2E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
832	chr11	32489663	32489664	rs10835920	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	11p13	WT1	rs10835920-T	0.38	1E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
832	chr11	32494961	32494962	rs3858461	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	11p13	WT1-AS	rs3858461-C	0.448978	1E-8		0.044241406	[0.029-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
833	chr11	32506839	32506840	rs10160794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p13		rs10160794-T	NR	2E-9		0.0306	[0.021-0.041] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
833	chr11	32516453	32516454	rs6484581	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	11p13	WT1-AS, EIF3M	rs6484581-T	0.4567	1E-5		0.2175	[0.12-0.31] unit increase	NR [NR] (imputed)	N
833	chr11	32522006	32522007	rs10767942	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	11p13	intergenic	rs10767942-?	NR	8E-6	(count)			Perlegen [429981]	N
833	chr11	32527237	32527238	rs7483826	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p13	WT1-AS	rs7483826-G	0.487817	2E-8		0.034207698	[0.022-0.046] unit increase	Affymetrix [7288503] (imputed)	N
833	chr11	32541783	32541784	rs10734411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	11p13		rs10734411-?	NR	4E-10				NR [~ 8900000] (imputed)	N
833	chr11	32541783	32541784	rs10734411	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	11p13	EIF3M	rs10734411-A	0.47	3E-9		0.12	[0.081-0.159] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
833	chr11	32616866	32616867	rs201860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p13		rs201860-?	NR	6E-8				NR [~ 8900000] (imputed)	N
833	chr11	32629882	32629883	rs114861240	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p13		rs114861240-G	0.948	3E-8		0.015	[0.0091-0.0209] unit increase	NR [NR] (imputed)	N
834	chr11	32658063	32658064	rs201855	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p13	CCDC73	rs201855-?	NR	2E-6	(3-methyladipate; pimelate)	0.52878225	[0.31-0.75] unit decrease	Affymetrix [at least 2500000] (imputed)	N
834	chr11	32673897	32673898	rs76491020	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p13	NR	rs76491020-C	0.09378900000000001	1E-9		0.0123389	[0.008-0.0167] unit increase	Affymetrix [16585854] (imputed)	N
834	chr11	32673897	32673898	rs76491020	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11p13	NR	rs76491020-C	0.09378900000000001	2E-6		0.0114374	[0.0065-0.0164] unit increase	Affymetrix [16585866] (imputed)	N
834	chr11	32765865	32765866	rs143864773	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	11p13	NR	rs143864773-T	0.9307518	1E-6		1.0764263	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
834	chr11	32765865	32765866	rs143864773	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11p13	NR	rs143864773-T	NR	2E-8		1.04	[1.02-1.06]	NR [NR] (imputed)	N
835	chr11	32786939	32786939	rs200647710	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p13	NR	rs200647710-A	0.470834	2E-8		0.0161679	[0.01-0.022] unit increase	Affymetrix [16577313] (imputed)	N
835	chr11	32846692	32846693	rs78865122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p13	NR	rs78865122-G	NR	9E-10		0.0321	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
835	chr11	32861404	32861405	rs183811190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p13		rs183811190-T	NR	2E-10		0.0397	[0.028-0.052] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
835	chr11	32861404	32861405	rs183811190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p13	PRRG4	rs183811190-T	0.036001	8E-18		0.05224817	[0.04-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr11	32861404	32861405	rs183811190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p13	PRRG4	rs183811190-T	0.03601	8E-13		0.043438084	[0.032-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr11	32895663	32895664	rs10767971	19772629	Latourelle JC	2009-09-22	BMC Med Genet	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	11p13	QSER1, PRRG4	rs10767971-T	NR	5E-7		3.24	[NR] years increase	Illumina, Perlegen [1861750] (imputed)	N
836	chr11	32910015	32910016	rs2786802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs2786802-T	0.824128	4E-13				Affymetrix, Illumina [24588908] (imputed)	N
836	chr11	32910015	32910016	rs2786802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p13	NR	rs2786802-T	0.797827	5E-14		0.018681	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
836	chr11	32927777	32927778	rs145678014	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p13		rs145678014-T	0.03	2E-11		6.71	z score increase	Affymetrix [9061022] (imputed)	N
836	chr11	32927777	32927778	rs145678014	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p13	NR	rs145678014-T	0.0439	2E-9				NR [9056863] (imputed)	N
836	chr11	32927777	32927778	rs145678014	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11p13		rs145678014-?	NR	3E-10		0.0471	unit decrease	NR [NR]	N
836	chr11	32927777	32927778	rs145678014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p13		rs145678014-?	NR	3E-12				NR [~ 8900000] (imputed)	N
836	chr11	32927777	32927778	rs145678014	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p13	QSER1	rs145678014-G	0.9567	2E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [~ 27000000] (imputed)	N
836	chr11	32956491	32956492	rs62618693	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p13		rs62618693-T	0.03	2E-22		9.75	z score increase	Affymetrix [9061022] (imputed)	N
836	chr11	32956491	32956492	rs62618693	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p13		rs62618693-T	0.03	3E-10		6.31	z score increase	Affymetrix [9061022] (imputed)	N
836	chr11	32956491	32956492	rs62618693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p13		rs62618693-T	NR	4E-8		0.0316	[0.02-0.043] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
836	chr11	32956491	32956492	rs62618693	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p13	NR	rs62618693-T	0.0451	6E-9				NR [9056863] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p13	NR	rs62618693-C	0.9566	7E-14		0.0853	[0.063-0.108] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p13	NR	rs62618693-C	0.9582	1E-13		0.0819	[0.06-0.104] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p13	NR	rs62618693-T	0.04520100000000005	2E-16		0.0158869	[0.012-0.02] unit increase	Affymetrix [16582909] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p13	NR	rs62618693-T	0.04556199999999999	8E-11		0.01672	[0.011-0.022] unit increase	Affymetrix [16582621] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p13	NR	rs62618693-T	0.04520100000000005	2E-15		0.0173911	[0.013-0.022] unit increase	Affymetrix [16582965] (imputed)	N
836	chr11	32956491	32956492	rs62618693	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p13	NR	rs62618693-T	0.04556199999999999	5E-11		0.0187921	[0.013-0.025] unit increase	Affymetrix [16582614] (imputed)	N
836	chr11	32956491	32956492	rs62618693	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p13	NR	rs62618693-C	0.95465	2E-9		0.0293368	[0.02-0.039] unit increase	NR [NR]	N
836	chr11	32956491	32956492	rs62618693	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p13	NR	rs62618693-T	0.0428	1E-9		0.0167117	[0.011-0.022] unit decrease	NR [9732723] (imputed)	N
836	chr11	32956491	32956492	rs62618693	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p13	NR	rs62618693-T	0.0428	2E-8		0.035272416	[0.023-0.048] unit decrease	NR [~ 10000000] (imputed)	N
837	chr11	33039092	33039093	rs4755351	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	11p13	DEPDC7	rs4755351-G	0.15972899	4E-6		1.0984026	[1.055417914-1.143137891]	Illumina [10439017] (imputed)	N
837	chr11	33057312	33057313	rs1467510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p13	TCP11L1	rs1467510-A	0.375153	1E-14		0.018475696	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
837	chr11	33091734	33091735	rs528122639	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p13	QSER1	rs528122639-A	9.0E-4	2E-7		2.09	[1.59-2.76]	Affymetrix, Illumina [~ 27000000] (imputed)	N
837	chr11	33104702	33104703	rs61889306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11p13	Intergenic	rs61889306-G	NR	8E-6		0.038376	[0.022-0.055] unit decrease	Illumina [13520550] (imputed)	N
837	chr11	33115900	33115901	rs141073673	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	11p13		rs141073673-?	NR	4E-6		1.853	[1.425-2.411]	Affymetrix [7975321] (imputed)	N
837	chr11	33131406	33131407	rs142641502	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to citalopram or escitalopram and depression	2,005 European ancestry non-responder cases, 192,083 European ancestry healthy controls	NA	11p13	CSTF3	rs142641502-?		8E-7		4.565	[2.155-9.671]	Illumina [~ 12000000] (imputed)	N
837	chr11	33136066	33136067	rs72904932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p13		rs72904932-?	NR	3E-9				NR [~ 8900000] (imputed)	N
837	chr11	33136066	33136067	rs72904932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p13		rs72904932-?	NR	1E-9		0.0400648	[0.028-0.052] unit increase	Affymetrix [20259828] (imputed)	N
838	chr11	33183042	33183043	rs112072415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p13		rs112072415-?	NR	2E-10				NR [~ 8900000] (imputed)	N
838	chr11	33204158	33204159	rs4756121	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11p13	NR	rs4756121-C	0.6861	3E-9		0.013354769	[0.009-0.0177] unit increase	Affymetrix [10613246] (imputed)	N
838	chr11	33204158	33204159	rs4756121	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11p13	NR	rs4756121-C	0.665	2E-10		0.011897904	[0.0082-0.0156] unit increase	Affymetrix [NR] (imputed)	N
838	chr11	33204158	33204159	rs4756121	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	11p13	LOC338739	rs4756121-C	0.688	6E-11		0.0179	[0.013-0.023] unit increase	Illumina [~ 250000] (imputed)	N
839	chr11	33308083	33308084	rs148530680	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	11p13	HIPK3	rs148530680-C	NR	4E-8		0.422	[0.27-0.57] unit increase	NR [11024754] (imputed)	N
839	chr11	33325375	33325376	rs16924133	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	11p13	TCP11L1, HIPK3, CSTF3	rs16924133-A	0.028	2E-6	(Temperament)	0.38	[NR] unit increase	Affymetrix [677643]	N
839	chr11	33384446	33384447	rs7927262	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	11p13	HIPK3	rs7927262-C	0.357771	2E-6		1.31	[1.17-1.45]	Illumina [41266535] (imputed)	N
839	chr11	33391654	33391655	rs80274406	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Peripheral vascular disease	4,301 European ancestry cases, 52,336 European ancestry controls	NA	11p13		rs80274406-G	0.0908801	4E-8		2.26		Affymetrix [12080827] (imputed)	N
839	chr11	33399690	33399691	rs2753408	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA1549L	5,366 Icelandic ancestry individuals	NA	11p13		rs2753408-A	0.4966	2E-176		0.514001	[0.48-0.55] unit decrease	Illumina [7506463] (imputed)	N
839	chr11	33405000	33405001	rs2753411	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11p13	HIPK3, KIAA1549L	rs2753411-A	0.49	2E-9		0.0052	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
839	chr11	33405000	33405001	rs2753411	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11p13	HIPK3	rs2753411-A	0.49	3E-8		0.00474	[0.0031-0.0064] unit decrease	Affymetrix [at least 8002429] (imputed)	N
839	chr11	33417109	33417110	rs12792396	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p13	KIAA1549L	rs12792396-G	0.38125	7E-68	(KIAA1549L, 11145_72_3)	0.43884188	[0.39-0.49] unit increase	Illumina [> 1000000] (imputed)	N
840	chr11	33439134	33439135	rs2615943	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	11p13	NR	rs2615943-T	0.2895	7E-6		1.661	[1.328-2.076]	Illumina [274400]	N
840	chr11	33457856	33457857	rs35897606	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	11p13	intergenic	rs35897606-?		6E-8		0.8	[0.51-1.09] unit increase	Illumina [8426597] (imputed)	N
840	chr11	33459235	33459236	rs117588678	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	11p13		rs117588678-T	NR	6E-6		43.651	[25.22-62.08] unit increase	Illumina [NR] (imputed)	N
840	chr11	33536624	33536625	rs1013608	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p13	NR	rs1013608-?	NR	8E-6		0.0077915	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
841	chr11	33588209	33588210	rs10437629	21423239	Willour VL	2011-03-25	Mol Psychiatry	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	11p13	C11orf41	rs10437629-?	NR	4E-6		1.34	[NR]	Affymetrix, Illumina [2408051] (imputed)	N
841	chr11	33638939	33638940	rs117890846	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11p13		rs117890846-A	0.949	6E-7		0.135	[0.082-0.188] unit decrease	Affymetrix [6030650] (imputed)	N
841	chr11	33668520	33668521	rs10742301	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA1549L	5,366 Icelandic ancestry individuals	NA	11p13		rs10742301-G	0.409	2E-65		0.321237	[0.28-0.36] unit increase	Illumina [7506463] (imputed)	N
841	chr11	33680543	33680544	rs117124040	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11p13	NR	rs117124040-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
842	chr11	33689539	33689540	rs755901261	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11p13		rs755901261-T	0.0142	6E-13		3.5912714	[2.34-4.84] mmHg decrease	Affymetrix, Illumina [247315] (imputed)	N
842	chr11	33739597	33739598	rs831636	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD59	5,367 Icelandic ancestry individuals	NA	11p13		rs831636-A	0.344	3E-30		0.21162	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
842	chr11	33739597	33739598	rs831636	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p13	CD59	rs831636-G	0.6540625	1E-14	(CD59, 11514_196_3)	0.18893321	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
842	chr11	33755955	33755956	rs3181269	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p13	CD59	rs3181269-C	0.745591	6E-9		0.00932683	[0.0062-0.0125] unit increase	Affymetrix [12370749]	N
842	chr11	33757769	33757770	rs2273121	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p13	CD59	rs2273121-A	0.252	5E-41	(CD59 glycoprotein, CD59.11514.196.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
842	chr11	33759091	33759092	rs11032362	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	11p13	CD59, FBXO3	rs11032362-?	NR	1E-10		0.0272405	[0.019-0.036] unit decrease	Affymetrix [25921788] (imputed)	N
842	chr11	33759091	33759092	rs11032362	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p13		rs11032362-A	0.09112	3E-17		0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
842	chr11	33759091	33759092	rs11032362	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11p13	CD59, FBXO3	rs11032362-A	0.0937	1E-27		1.0743		Affymetrix [11880941] (imputed)	N
842	chr11	33759091	33759092	rs11032362	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p13	CD59, FBXO3	rs11032362-A	0.0937	1E-27		1.0729373		Affymetrix [11880941] (imputed)	N
842	chr11	33759091	33759092	rs11032362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11p13		rs11032362-?	NR	5E-17				NR [~ 8900000] (imputed)	N
842	chr11	33777333	33777334	rs1402954	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p13	NA	rs1402954-T		1E-8		0.0166567	[0.011-0.022] unit decrease	Illumina [13288253] (imputed)	N
842	chr11	33791400	33791400	rs373709809	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11p13	NR	rs373709809-G	0.3355	2E-9		0.001404	[0.00093-0.00188] unit decrease	Affymetrix [NR] (imputed)	N
842	chr11	33806821	33806822	rs11825259	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	11p13	FBXO3	rs11825259-A	0.88	4E-6	(AA)	0.21	[0.11-0.31] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
843	chr11	33868606	33868607	rs11032423	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11p13	LMO2	rs11032423-?	0.04637	8E-6	(IED)			Illumina [475971]	N
843	chr11	33881015	33881016	rs3740617	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	NA	11p13	NR	rs3740617-T	NR	6E-6	(EA)	2.76	[1.747-4.361]	Illumina [34985077] (imputed)	N
843	chr11	33901482	33901483	rs34439695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p13	LMO2	rs34439695-T	0.035008	7E-11		0.039744545	[0.028-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr11	33901482	33901483	rs34439695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p13	LMO2	rs34439695-T	0.035021	1E-11		0.0412639	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr11	33901482	33901483	rs34439695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs34439695-T	0.0633369	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
843	chr11	33903608	33903609	rs75395676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p13		rs75395676-?	NR	5E-13				NR [~ 8900000] (imputed)	N
843	chr11	33904179	33904180	rs1885525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p13	LMO2	rs1885525-G	0.491972	2E-9		0.013381678	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
843	chr11	33904179	33904180	rs1885525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs1885525-A	0.504496	7E-10				Affymetrix, Illumina [23467995] (imputed)	N
843	chr11	33904179	33904180	rs1885525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p13	NR	rs1885525-A	0.506048	8E-12		0.012936	[0.0092-0.0166] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
843	chr11	33912789	33912790	rs11032440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11p13		rs11032440-T	0.647162	1E-8		0.021682	[0.014-0.029] unit increase	Illumina [13476299] (imputed)	N
843	chr11	33913567	33913568	rs2273799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p13		rs2273799-C	NR	1E-24		0.0178	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
843	chr11	33913567	33913568	rs2273799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p13		rs2273799-C	NR	1E-36		0.0255	[0.022-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p13	LMO2	rs2273799-C	0.487966	1E-30		0.025546575	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p13	LMO2	rs2273799-C	0.48803	2E-33		0.027023595	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p13	LMO2	rs2273799-C	0.488109	2E-35		0.027983943	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p13	LMO2	rs2273799-C	0.487974	2E-40		0.0304806	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p13	LMO2	rs2273799-C	0.487954	9E-42		0.030048309	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs2273799-C	0.518741	2E-43				Affymetrix, Illumina [24332387] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p13	NR	rs2273799-C	0.48821	1E-41		0.026469	[0.023-0.03] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs2273799-C	0.511786	7E-66				Affymetrix, Illumina [24246363] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p13	NR	rs2273799-C	0.488007	9E-62		0.030403	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs2273799-C	0.514745	4E-63				Affymetrix, Illumina [20825802] (imputed)	N
843	chr11	33913567	33913568	rs2273799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p13	NR	rs2273799-C	0.488128	2E-60		0.031953	[0.028-0.036] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
843	chr11	33913567	33913568	rs2273799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p13		rs2273799-?	NR	5E-32				NR [~ 8900000] (imputed)	N
843	chr11	33913567	33913568	rs2273799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11p13	LMO2	rs2273799-C	0.4881	3E-10		0.02273278	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr11	33913567	33913568	rs2273799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11p13	LMO2	rs2273799-C	0.4881	2E-16		0.02932576	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr11	33913567	33913568	rs2273799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p13	LMO2	rs2273799-C	0.4881	2E-19		0.03225142	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr11	33914462	33914463	rs3758641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p13		rs3758641-A	NR	2E-38		0.0261	[0.022-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
843	chr11	33914462	33914463	rs3758641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11p13		rs3758641-A	0.648514	1E-9		0.0228965	[0.016-0.03] unit increase	Illumina [13476266] (imputed)	N
843	chr11	33914462	33914463	rs3758641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p13		rs3758641-?	NR	4E-47				NR [~ 8900000] (imputed)	N
843	chr11	33917465	33917466	rs750781	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	11p13	LMO2, CAPRIN1	rs750781-A	0.2066	6E-6		0.2127	[0.12-0.3] unit decrease	NR [NR] (imputed)	N
844	chr11	34009783	34009784	rs147477420	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	11p13	LMO2, CAPRIN1	rs147477420-G	NR	7E-7		0.745	[0.45-1.04] unit decrease	Illumina [27700000] (imputed)	N
844	chr11	34018569	34018570	rs12787303	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	896 European ancestry major depressive disorder cases, 934 European ancestry individuals	NA	11p13	NR	rs12787303-?		9E-6		1531.0	[NR] unit decrease	Illumina [4278941] (imputed)	N
844	chr11	34019536	34019537	rs12285326	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	11p13	CAPRIN1	rs12285326-?	NR	5E-6	(EA)	1.6393442	[1.61-3.12]	Illumina [at least 756588]	N
844	chr11	34068036	34068037	rs190194639	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p13	CAPRIN1	rs190194639-T	0.0767	5E-9		0.2746	[0.18-0.37] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
846	chr11	34222436	34222437	rs146431069	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	11p13	ABTB2	rs146431069-CT	0.9579	5E-6		0.1068	[0.061-0.153] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
846	chr11	34289424	34289425	rs73495598	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11p13	ABTB2	rs73495598-T	0.083	5E-21		0.4	[0.32-0.48] unit decrease	Affymetrix [339439]	N
846	chr11	34310402	34310403	rs7935569	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p13	NAT10	rs7935569-?	NR	7E-6	(orotic acid)	0.17248333	[0.097-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
846	chr11	34325249	34325250	rs10836184	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	11p13	NR	rs10836184-T	0.21	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
847	chr11	34343711	34343712	rs17342773	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11p13	NR	rs17342773-?	NR	7E-7		0.1314	[0.08-0.183] unit increase	Illumina [~ 7800000] (imputed)	N
847	chr11	34396538	34396539	rs7927163	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p13	NR	rs7927163-?		3E-6				Illumina [4322238] (imputed)	N
847	chr11	34399184	34399185	rs2745924	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11p13	CAT	rs2745924-T	0.545	3E-14	(Catalase, CAT.3488.64.2)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
847	chr11	34403494	34403495	rs11032641	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAT	5,360 Icelandic ancestry individuals	NA	11p13		rs11032641-A	0.1452	9E-10		0.164103	[0.11-0.22] unit increase	Illumina [7506463] (imputed)	N
847	chr11	34413864	34413865	rs61880787	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p13	NR	rs61880787-?		2E-6				Illumina [4322238] (imputed)	N
847	chr11	34442955	34442956	rs12786782	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		ELF5	rs12786782-?	NR	8E-6	(TAG 56:4)	0.34813765	[0.2-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
848	chr11	34477124	34477125	rs7933285	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p13	CAT	rs7933285-C	0.79953125	1E-20	(CAT, 3488_64_2)	0.2868451	[0.23-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
848	chr11	34484541	34484542	rs2284367	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11p13	CAT, AL137224.1, ELF5	rs2284367-C	0.2201605	4E-25	(EA, Catalase)	0.5109	[0.42-0.61] unit decrease	Affymetrix [509946]	N
848	chr11	34508127	34508128	rs4755375	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAT	5,360 Icelandic ancestry individuals	NA	11p13		rs4755375-T	0.2464	5E-38		0.275392	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
848	chr11	34534656	34534657	rs836144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p13		rs836144-C	NR	3E-20		0.0192	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
848	chr11	34541140	34541141	rs11032739	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p13	NR	rs11032739-T	NR	7E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
848	chr11	34555190	34555191	rs836132	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	11p13	ELF5	rs836132-C	0.15	5E-8		0.65	unit increase	Illumina [283437]	N
849	chr11	34605434	34605435	rs5028798	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11p13	EHF	rs5028798-?	NR	3E-6	(ATBV)			Affymetrix [70897]	N
849	chr11	34617335	34617336	rs12362128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p13	NR	rs12362128-G	NR	2E-10		0.0252	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
849	chr11	34622049	34622050	rs12793417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11p13		rs12793417-T	NR	8E-11		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
849	chr11	34642667	34642668	rs286925	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p13	PDHX	rs286925-A	0.1815	5E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
849	chr11	34644453	34644454	rs12224573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p13		rs12224573-T	NR	6E-9		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
849	chr11	34653770	34653771	rs17358295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11p13		rs17358295-G	NR	8E-26		0.0358	[0.029-0.042] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
849	chr11	34653770	34653771	rs17358295	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11p13	EHF	rs17358295-T	0.89411	5E-36		0.0101509	[0.0085-0.0118] unit increase	Affymetrix [13995440] (imputed)	N
849	chr11	34655362	34655363	rs286913	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment	738 European ancestry, African American, and other ancestry cases	NA	11p13	EHF	rs286913-?	0.05	7E-8	(Ziprasidone, vigilance)			Affymetrix [492900]	N
849	chr11	34662960	34662961	rs286905	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p13	EHF	rs286905-A	0.311	4E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
849	chr11	34665924	34665925	rs3751074	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	11p13	Intergenic	rs3751074-T	0.09547	1E-7	(Nasal bridge length)	0.7026	[0.39-1.02] unit decrease	Illumina [34985077] (imputed)	N
849	chr11	34690654	34690655	rs704732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	11p13		rs704732-C	0.318347	9E-9		0.0215294	[0.014-0.029] unit increase	Illumina [13476165] (imputed)	N
849	chr11	34695770	34695771	rs704735	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p13	EHF, APIP	rs704735-?		2E-8		0.024	[0.016-0.032] unit decrease	Illumina [31500000] (imputed)	N
850	chr11	34764478	34764479	rs1355223	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	11p13	EHF	rs1355223-?		4E-6	(lcSSc)	1.12	[NR]	Illumina [NR]	N
850	chr11	34764918	34764919	rs4756168	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	11p13	EHF, APIP	rs4756168-?	NR	1E-9		0.02684	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
850	chr11	34775075	34775076	rs10836292	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB3A1	5,360 Icelandic ancestry individuals	NA	11p13		rs10836292-T	0.1393	9E-33		0.317198	[0.27-0.37] unit decrease	Illumina [7506463] (imputed)	N
850	chr11	34779463	34779464	rs11032840	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	11p13	intergenic	rs11032840-G	0.6	1E-12		0.076	[0.054-0.098] unit increase	Illumina [7312348] (imputed)	N
850	chr11	34780935	34780936	rs10466455	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	11p13	EHF	rs10466455-T	0.58	2E-7		1.3774	[1.3-1.47]	Illumina [NR]	N
850	chr11	34782971	34782972	rs10047488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p13		rs10047488-C	NR	6E-10		0.0262	[0.018-0.034] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
850	chr11	34783416	34783417	rs4378355	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	11p13	EHF, APIP	rs4378355-C	0.39	2E-10		0.0368406	[0.025-0.048] unit increase	Affymetrix [10109774] (imputed)	N
850	chr11	34789385	34789386	rs7112043	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs7112043-T	0.41	3E-6	(males, random)			Illumina [8520458] (imputed)	N
850	chr11	34805848	34805849	rs7929679	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs7929679-G	0.5	2E-10	(p.Phe508del, fixed)	0.11	[NR] unit increase	Illumina [8520458] (imputed)	N
850	chr11	34805848	34805849	rs7929679	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs7929679-G	0.5	1E-9	(EA, p.Phe508del, fixed)			Illumina [8520458] (imputed)	N
850	chr11	34805848	34805849	rs7929679	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs7929679-G	0.5	1E-7	(males, p.Phe508del, fixed)			Illumina [8520458] (imputed)	N
850	chr11	34805848	34805849	rs7929679	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11p13	APIP, EHF	rs7929679-G	0.49	7E-9	(CC16)			Illumina [588352]	N
850	chr11	34810009	34810010	rs10742326	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	11p13	APIP	rs10742326-G	0.59	4E-6		1.14	[1.08-1.21]	Illumina [~ 2100000] (imputed)	N
850	chr11	34834203	34834204	rs12793173	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	11p13	APIP, EHF	rs12793173-C	0.24	1E-9	p.Phe508del/p.Phe508del only			Illumina [~ 2609000] (imputed)	N
850	chr11	34835120	34835121	rs537873	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB3A1	5,360 Icelandic ancestry individuals	NA	11p13		rs537873-A	0.2563	6E-31		0.243988	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
850	chr11	34851759	34851760	rs546131	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs546131-G	0.36	7E-9	(EA, fixed)			Illumina [8520458] (imputed)	N
850	chr11	34851759	34851760	rs546131	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	11p13	APIP, EHF	rs546131-G	0.36	3E-9	(fixed)	0.09	[NR] unit decrease	Illumina [8520458] (imputed)	N
851	chr11	34881634	34881635	rs146771634	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	11p13	NR	rs146771634-?		5E-7	(PCB156)	1.15	[0.7-1.6] unit decrease	Illumina [8736858] (imputed)	N
851	chr11	34908779	34908780	rs2956092	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p13	NR	rs2956092-C	0.6526	2E-10		0.0254	[0.018-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
851	chr11	34982147	34982148	rs2767036	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p13	PDHX	rs2767036-C	0.2908	3E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
851	chr11	34986277	34986278	rs75483285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p13	NR	rs75483285-C	0.01394	3E-8	(RMDN3)	0.01665	NR unit increase	Illumina [1671387] (imputed)	N
852	chr11	34999744	34999745	rs10768108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p13		rs10768108-?	NR	5E-13				NR [~ 8900000] (imputed)	N
852	chr11	35040509	35040510	rs118106403	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11p13		rs118106403-?	NR	1E-7		0.956106	[0.6-1.31] unit increase	Illumina [9842460] (imputed)	N
852	chr11	35070067	35070068	rs2785152	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11p13	PDHX	rs2785152-T	0.51015	2E-9		1.08	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
852	chr11	35083632	35083633	rs2553773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11p13		rs2553773-G	NR	6E-14		0.0692	[0.051-0.087] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
852	chr11	35083632	35083633	rs2553773	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p13	CD44	rs2553773-C	0.4137	1E-10		0.037	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
852	chr11	35084591	35084592	rs2732552	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p13		rs2732552-T	0.447	7E-14		0.0608	[0.045-0.077] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
852	chr11	35084834	35084835	rs2785202	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11p13	PDHX, CD44	rs2785202-C	0.55	7E-14		1.06	[1.05-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
852	chr11	35085452	35085453	rs2553772	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p13	PDHX	rs2553772-T	0.46451	9E-53		0.0282535	[0.025-0.032] unit decrease	NR [13737936] (imputed)	N
852	chr11	35088398	35088399	rs2732549	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	11p13	PDHX, CD44	rs2732549-?	NR	1E-6		1.1111112	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
852	chr11	35088398	35088399	rs2732549	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	11p13	CD44	rs2732549-T		1E-23		1.24	[1.19-1.29]	Illumina [644674]	N
852	chr11	35093069	35093070	rs2785197	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	11p13	CD44	rs2785197-C	0.74	2E-7		1.2346		Illumina [2100739] (imputed)	N
852	chr11	35094864	35094865	rs34136481	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p13		rs34136481-?	NR	3E-57		0.0319683	[0.028-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
852	chr11	35094864	35094865	rs34136481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p13	LOC100507144	rs34136481-CA	0.462121	4E-9	(men)	0.0301555	[0.02-0.04] unit decrease	NR [17166351] (imputed)	N
852	chr11	35094864	35094865	rs34136481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p13	LOC100507144	rs34136481-CA	0.460308	2E-18		0.0287678	[0.022-0.035] unit decrease	NR [17166351] (imputed)	N
852	chr11	35094864	35094865	rs34136481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p13	LOC100507144	rs34136481-CA	0.458725	4E-11	(women)	0.0292722	[0.02-0.038] unit decrease	NR [17166351] (imputed)	N
852	chr11	35095485	35095486	rs2732540	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11p13	NR	rs2732540-A	0.224	1E-20		0.847	[0.81-0.88]	Illumina [11270530] (imputed)	N
852	chr11	35098192	35098193	rs387619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p13		rs387619-?	NR	1E-50				NR [~ 8900000] (imputed)	N
852	chr11	35098192	35098193	rs387619	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p13		rs387619-?	NR	3E-58		0.0321997	[0.028-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
852	chr11	35098192	35098193	rs387619	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	11p13	CD44	rs387619-?	0.444	4E-11	(EA)	1.22	[NR]	NR [6344733] (imputed)	N
852	chr11	35098192	35098193	rs387619	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	11p13	CD44	rs387619-C		3E-13		1.21	[NR]	Illumina [> 644674] (imputed)	N
852	chr11	35109916	35109917	rs1425800	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	11p13	PDHX, CD44	rs1425800-?	NR	5E-7				Affymetrix [753382]	N
852	chr11	35111156	35111157	rs11032994	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11p13	NR	rs11032994-A	0.256	1E-17		1.147	[1.12-1.18]	Illumina [11270530] (imputed)	N
852	chr11	35119481	35119482	rs353592	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11p13	PDHX, CD44	rs353592-?	NR	1E-8		1.1235955	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
852	chr11	35123050	35123051	rs1559759	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	11p13	CD44	rs1559759-A	0.15	9E-6	(EA-triglyceride response)	25.59	[14.3-36.88] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
852	chr11	35124039	35124040	rs4756190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p13	NR	rs4756190-T	0.580295	1E-8		0.00413351	[0.0025-0.0058] unit increase	Affymetrix [16582909] (imputed)	N
852	chr11	35124039	35124040	rs4756190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p13	NR	rs4756190-T	0.580295	4E-6		0.00368706	[0.0018-0.0055] unit increase	Affymetrix [16582965] (imputed)	N
853	chr11	35155731	35155732	rs2785173	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	11p13	CD44	rs2785173-T	0.02	3E-6	(change in alpha-TOH)	1.94	[1.12-2.76] unit increase	Illumina [549989]	N
853	chr11	35163401	35163402	rs2785172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p13		rs2785172-A	NR	3E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
853	chr11	35185055	35185056	rs353634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p13		rs353634-?	NR	7E-11				NR [~ 8900000] (imputed)	N
853	chr11	35241411	35241412	rs11323103	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	11p13	NR	rs11323103-A		9E-6		0.2418	[0.13-0.35] unit increase	Illumina [12759548] (imputed)	N
853	chr11	35244057	35244058	rs7116432	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	11p13	CD44	rs7116432-?	NR	5E-8				NR [NR]	N
853	chr11	35244456	35244457	rs12804343	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (revised physical anhedonia scale and revised social anhedonia scale)	3,820 Finnish ancestry individuals	NA	11p13	SLC1A2	rs12804343-?		5E-6				Illumina [~ 9600000] (imputed)	N
853	chr11	35244573	35244574	rs11607862	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	11p13	CD44	rs11607862-T	0.29	7E-6		0.05	[0.03-0.07] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
854	chr11	35266943	35266944	rs736374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	11p13		rs736374-A	NR	6E-16		0.0832	[0.063-0.103] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
854	chr11	35266943	35266944	rs736374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11p13		rs736374-?	NR	9E-19				NR [~ 8900000] (imputed)	N
854	chr11	35274828	35274829	rs1043101	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11p13	CD44, SLC1A2	rs1043101-G	0.4042	5E-18		1.234	[1.18-1.29]	Illumina [8966411] (imputed)	N
854	chr11	35280851	35280852	rs10768122	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	11p13	CD44	rs10768122-G	0.41	2E-9		1.22	[NR]	Illumina [495821]	N
854	chr11	35289042	35289043	rs11033048	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11p13	SLC1A2	rs11033048-T	0.366	2E-10		1.091		Illumina [715631] (imputed)	N
854	chr11	35289042	35289043	rs11033048	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11p13	SLC1A2	rs11033048-T	0.366	2E-10		1.091		Illumina [715631] (imputed)	N
854	chr11	35289818	35289819	rs1570214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11p13		rs1570214-G	NR	2E-18		0.077	[0.06-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
854	chr11	35308987	35308988	rs10836366	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11p13	SLC1A2	rs10836366-T	0.7486	2E-12		0.0191	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
854	chr11	35308987	35308988	rs10836366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11p13		rs10836366-?	NR	4E-12				NR [~ 8900000] (imputed)	N
854	chr11	35314454	35314455	rs10836367	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11p13	SLC1A2	rs10836367-C	0.388263	8E-19		0.08314465	[0.065-0.102] unit increase	Affymetrix [7288503] (imputed)	N
854	chr11	35316845	35316846	rs7946149	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum mid-anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p13	SLC1A2	rs7946149-?		7E-6				Illumina [4322238] (imputed)	N
854	chr11	35317711	35317712	rs10742340	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	11p13	SLC1A2	rs10742340-C	0.393	2E-17		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
854	chr11	35320879	35320880	rs2421770	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (persistent)	141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals	NA	11p13	SLC1A2	rs2421770-C	0.62	8E-6		1.83	[1.40-2.38]	Affymetrix, Illumina [at least 603042] (imputed)	N
854	chr11	35329614	35329615	rs3794087	22764253	Thier S	2012-07-03	Neurology	Polymorphisms in the glial glutamate transporter SLC1A2 are associated with essential tremor.	Essential tremor	436 European ancestry cases, 928 European ancestry controls	554 European ancestry cases, 609 European ancestry controls	11p13	SLC1A2	rs3794087-?	NR	1E-7		1.43	[1.26-1.64]	Affymetrix [620077]	N
854	chr11	35351638	35351639	rs4083482	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	11p13	SLC1A2	rs4083482-T	0.039	2E-6		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
855	chr11	35429344	35429345	rs189436056	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11p13	SLC1A2	rs189436056-A	NR	7E-7		0.02898	[0.018-0.04] unit increase	Illumina [NR] (imputed)	N
855	chr11	35433711	35433712	rs58090211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p13		rs58090211-A	NR	3E-9		0.0807	[0.054-0.107] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
855	chr11	35433711	35433712	rs58090211	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p13	NR	rs58090211-C	0.8433	3E-9		0.0539	[0.036-0.072] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
855	chr11	35435432	35435433	rs11033115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p13		rs11033115-C	0.126005936	4E-9		0.081658185	[0.054-0.109] unit decrease	Illumina [13429769] (imputed)	N
855	chr11	35435432	35435433	rs11033115	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11p13		rs11033115-C	0.125327248	5E-9		0.9293968	[0.906847932-0.952506358]	Illumina [8919992] (imputed)	N
855	chr11	35437862	35437863	rs2421897	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	11p13	NR	rs2421897-G	0.8771	3E-9		0.0802	[0.054-0.107] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
855	chr11	35437862	35437863	rs2421897	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11p13	SLC1A2	rs2421897-G	0.88	7E-9		1.08	1.05-1.11	Illumina [12557761] (imputed)	N
855	chr11	35453375	35453376	rs146109676	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p13	PAMR1	rs146109676-C	1.0	4E-6	(AA)	0.425	unit increase	Illumina [NR] (imputed)	N
855	chr11	35460842	35460843	rs644755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p13		rs644755-G	NR	2E-10		0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
855	chr11	35483520	35483521	rs7129975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p13		rs7129975-?	NR	7E-15				NR [~ 8900000] (imputed)	N
855	chr11	35495440	35495441	rs1996369	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	11p13	PAMR1, SLC1A2	rs1996369-?	0.21	9E-6		0.27	[0.15-0.39] unit increase	Illumina [2095209]	N
856	chr11	35524560	35524561	rs629236	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11p13	Intergenic	rs629236-?	NR	8E-6		1.376	[NR]	Affymetrix [492217] (imputed)	N
856	chr11	35532310	35532311	rs12420856	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11p13	NR	rs12420856-?	NR	1E-6		0.00876	[0.0052-0.0123] unit decrease	Affymetrix [9658292] (imputed)	N
856	chr11	35539268	35539269	rs650950	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	11p13	PAMR1	rs650950-G	0.29	2E-6	(Hispanic)	1.55	[NR]	Illumina [1795103]	N
856	chr11	35550452	35550453	rs56694684	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	11p13	NR	rs56694684-?	NR	4E-6		2.5176234	[1.69-3.7]	Illumina [13976150] (imputed)	N
856	chr11	35593570	35593571	rs1374494	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	11p13	FJX1	rs1374494-?	NR	3E-6				Affymetrix [753382]	N
856	chr11	35593570	35593571	rs1374494	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	11p13	FJX1	rs1374494-?	NR	2E-6				Affymetrix [753382]	N
857	chr11	35686477	35686478	rs1174117	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	11p13	TRIM44	rs1174117-?	NR	4E-10		1.0706638	[1.05-1.09]	Illumina [13729857] (imputed)	N
857	chr11	35701235	35701236	rs7928794	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	11p13	TRIM44	rs7928794-?	NR	8E-6	(SAS)			Affymetrix [492000]	N
858	chr11	35800240	35800241	rs138567168	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		11p13	NR	rs138567168-C	0.9811409	5E-6		1.1235955	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
858	chr11	35863971	35863972	rs1853554	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	11p13	NR	rs1853554-A	0.226	3E-6		0.1711	[0.099-0.243] unit decrease	Illumina [10677593] (imputed)	N
858	chr11	35871265	35871266	rs11033303	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	11p13	intergenic	rs11033303-A	0.37	6E-7		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
858	chr11	35871265	35871266	rs11033303	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11p13	intergenic	rs11033303-A	0.37	2E-7		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
859	chr11	35916365	35916366	rs652737	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	11p13		rs652737-?	NR	1E-6		0.54937	[0.33-0.77] unit decrease	Illumina [9875426] (imputed)	N
859	chr11	35916365	35916366	rs652737	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11p13		rs652737-?	NR	1E-7		0.6535299	[0.41-0.9] unit decrease	Illumina [9842460] (imputed)	N
859	chr11	35981151	35981152	rs113306449	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p13	NR	rs113306449-T	0.975	1E-8		0.4849	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
859	chr11	36019024	36019025	rs183471242	33410475	Mangantig E	2021-01-01	Hum Mol Genet	Germline variants are associated with increased primary melanoma tumor thickness at diagnosis.	Breslow thickness in cutaneous melanoma	8,505 European ancestry individuals	NA	11p13		rs183471242-A	0.0098	4E-9		0.353	unit increase	Illumina [13517544] (imputed)	N
860	chr11	36052137	36052138	rs4547071	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p13	TRIM44	rs4547071-?	NR	9E-6	(TAG 56:4)	0.30217755	[0.17-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
860	chr11	36074217	36074218	rs11033388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p13	NR	rs11033388-T	0.418839	2E-24		0.019588	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
860	chr11	36078170	36078171	rs4756265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p13	LDLRAD3	rs4756265-G	0.418433	2E-17		0.019115033	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
860	chr11	36079255	36079256	rs10768174	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FJX1	5,364 Icelandic ancestry individuals	NA	11p13		rs10768174-G	0.411	3E-32		0.216394	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
860	chr11	36079255	36079256	rs10768174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p13	NR	rs10768174-A	0.576142	1E-22				Affymetrix, Illumina [23472807] (imputed)	N
860	chr11	36086029	36086031	rs34464861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p13		rs34464861-A	NR	1E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
860	chr11	36088416	36088417	rs1499510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p13	LDLRAD3	rs1499510-C	0.586623	1E-9		0.013862803	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
860	chr11	36088416	36088417	rs1499510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p13	LDLRAD3	rs1499510-C	0.586633	2E-12		0.0159249	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr11	36121052	36121053	rs4756274	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p13	LDLRAD3	rs4756274-G	0.990445536325697	9E-6	(F_Sutterellaceae_HB)	1.54736	[0.87-2.23] unit increase	Illumina [7711310] (imputed)	N
860	chr11	36173088	36173089	rs12574547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FJX1	5,364 Icelandic ancestry individuals	NA	11p13		rs12574547-G	0.3175	5E-13		0.144473	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
861	chr11	36286829	36286830	rs149502810	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p13	NR	rs149502810-?	NR	3E-7	(AA)	1.9023	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
861	chr11	36291553	36291554	rs56386213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p13	LINC00610	rs56386213-G	NR	9E-10		0.0174683	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
861	chr11	36291553	36291554	rs56386213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p13	LINC00610	rs56386213-G	NR	3E-10		0.0179728	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
862	chr11	36327793	36327794	rs67184556	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p13	NR	rs67184556-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
862	chr11	36327793	36327794	rs67184556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p13		rs67184556-?	NR	3E-10				NR [~ 8900000] (imputed)	N
862	chr11	36328427	36328427	rs5791099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11p13	NR	rs5791099-TA	0.37036	2E-8		0.00668891	[0.0041-0.0093] unit increase	Affymetrix [16585854] (imputed)	N
862	chr11	36332688	36332689	rs61878692	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	11p13		rs61878692-?	NR	2E-8		1.06	[1.04-1.09]	Illumina [5170515] (imputed)	N
862	chr11	36336262	36336263	rs2218565	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	11p13	PRR5L	rs2218565-?	NR	2E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
862	chr11	36343692	36343693	rs7127214	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	11p13	PRR5L	rs7127214-?	0.65	2E-8	(dominant model)	1.2820514	[1.18-1.41]	Illumina [123003]	N
862	chr11	36344201	36344202	rs7130870	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11p13	PRR5L	rs7130870-C	0.67	3E-8				NR [> 9500000] (imputed)	N
862	chr11	36344201	36344202	rs7130870	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11p13	PRR5L	rs7130870-C	0.669745	8E-9		1.0386508	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
862	chr11	36344201	36344202	rs7130870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11p13		rs7130870-?	NR	2E-9				NR [~ 8900000] (imputed)	N
862	chr11	36351780	36351781	rs7108441	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11p13	PRR5L	rs7108441-A	0.725239	4E-9		1.0406339	[1.02692405670356-1.05452679518749]	NR [9572556] (imputed)	N
862	chr11	36351780	36351781	rs7108441	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11p13	PRR5L	rs7108441-G	0.2748	2E-9				Affymetrix [15688218] (imputed)	N
862	chr11	36361606	36361607	rs7114403	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11p13	NR	rs7114403-A	0.51	2E-12		0.013	[0.0095-0.0165] unit increase	Affymetrix [2446094] (imputed)	N
862	chr11	36361606	36361607	rs7114403	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11p13	NR	rs7114403-A	0.51	5E-8				Affymetrix [2446094] (imputed)	N
862	chr11	36361615	36361616	rs7128640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p13	PRR5L	rs7128640-C	NR	6E-14		0.0211879	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
862	chr11	36361615	36361616	rs7128640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p13	PRR5L	rs7128640-C	NR	3E-14		0.0214713	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
862	chr11	36361615	36361616	rs7128640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11p13	PRR5L	rs7128640-C	NR	5E-9		0.0166725	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
862	chr11	36361615	36361616	rs7128640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11p13	PRR5L	rs7128640-C	NR	2E-8		0.0161334	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
862	chr11	36361917	36361918	rs7101640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p13	PRR5L	rs7101640-T	NR	5E-8		0.0214276	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
862	chr11	36362124	36362125	rs12364550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p13	PRR5L	rs12364550-G	NR	2E-8		0.0220542	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
862	chr11	36363574	36363575	rs4755450	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11p13	PRR5L	rs4755450-G	0.66	7E-6		1.06	[1.03-1.08]	Illumina [161311]	N
862	chr11	36365252	36365253	rs10836538	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11p13		rs10836538-T	0.3318	5E-12		0.92		Affymetrix, Illumina [9397031] (imputed)	N
862	chr11	36365252	36365253	rs10836538	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11p13	NR	rs10836538-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
862	chr11	36365252	36365253	rs10836538	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11p13	PRR5L	rs10836538-?	NR	3E-13		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
862	chr11	36365252	36365253	rs10836538	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11p13	PRR5L	rs10836538-G	NR	6E-12		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
862	chr11	36371756	36371757	rs2592555	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11p13	PRR5L	rs2592555-T	0.73	9E-7	(EA, fixed effects)	1.0752687		Illumina [15539996] (imputed)	N
862	chr11	36372431	36372432	rs112013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p13	PRR5L	rs112013938-T	NR	1E-15		0.0241994	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
862	chr11	36372431	36372432	rs112013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p13	PRR5L	rs112013938-T	NR	7E-16		0.0244536	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
862	chr11	36372431	36372432	rs112013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11p13	PRR5L	rs112013938-T	NR	3E-9		0.0180688	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
862	chr11	36372431	36372432	rs112013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p13	PRR5L	rs112013938-T	NR	4E-9		0.0184824	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
862	chr11	36372431	36372432	rs112013938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11p13	PRR5L	rs112013938-T	NR	4E-8		0.0168312	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
862	chr11	36373868	36373869	rs11603150	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11p13	NR	rs11603150-T	0.6869	2E-10		0.0135	[0.0094-0.0176] unit increase	NR [~ 27400000] (imputed)	N
862	chr11	36373868	36373869	rs11603150	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11p13	NR	rs11603150-T	0.6869	1E-7		0.0111	[0.007-0.0152] unit increase	NR [~ 27400000] (imputed)	N
862	chr11	36376020	36376021	rs10501149	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11p13	NR	rs10501149-G	0.6842	2E-8		1.0364842	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
862	chr11	36386900	36386901	rs7925585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11p13		rs7925585-?	NR	3E-9				NR [~ 8900000] (imputed)	N
862	chr11	36386900	36386901	rs7925585	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11p13	PRR5L	rs7925585-A	0.6565	3E-6	(conditional)	0.0244	NR unit increase	NR [NR]	N
862	chr11	36427291	36427292	rs6484847	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11p12		rs6484847-T	0.1469	4E-9		1.09		Affymetrix, Illumina [9397031] (imputed)	N
862	chr11	36430306	36430307	rs7122699	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	11p12		rs7122699-?	NR	7E-6		1.313	[1.166-1.479]	Affymetrix [7975321] (imputed)	N
862	chr11	36432023	36432024	rs12295535	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	11p12	PRR5L	rs12295535-A	0.02376	8E-13		1.68	[1.46-1.93]	Illumina [128830]	N
862	chr11	36434541	36434542	rs11033603	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	11p12	NR	rs11033603-a	0.042	1E-12		1.18	[1.13-1.23]	Affymetrix, Illumina [16201029] (imputed)	N
863	chr11	36438074	36438075	rs1365120	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11p12	PRR5L	rs1365120-C	NR	4E-8		1.0957704	NR	Affymetrix, Illumina [8278136] (imputed)	N
863	chr11	36446711	36446712	rs331446	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p12	NR	rs331446-C	NR	4E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
863	chr11	36458996	36458997	rs62621409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p12	PRR5L	rs62621409-G	NR	1E-8		0.0394079	[0.026-0.053] unit increase	Affymetrix [319769] (imputed)	N
863	chr11	36458996	36458997	rs62621409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p12	PRR5L	rs62621409-G	NR	3E-8		0.0383433	[0.025-0.052] unit increase	Affymetrix [319769] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11p12	PRR5L	rs62621409-G	0.042703	5E-9		0.031931087	[0.021-0.043] unit increase	Affymetrix [93095623] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p12	PRR5L	rs62621409-G	0.042695	4E-9		0.0324787	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p12	NR	rs62621409-G	0.041478	9E-11				Affymetrix, Illumina [24332387] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p12	NR	rs62621409-G	0.043082	9E-13		0.033982	[0.025-0.043] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p12	NR	rs62621409-G	0.041477	1E-11				Affymetrix, Illumina [24246363] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p12	NR	rs62621409-G	0.042925	4E-14		0.033797	[0.025-0.043] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
863	chr11	36458996	36458997	rs62621409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p12	NR	rs62621409-G	0.043053	4E-12		0.0329	[0.024-0.042] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
863	chr11	36458996	36458997	rs62621409	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p12	NR	rs62621409-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
863	chr11	36458996	36458997	rs62621409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p12		rs62621409-?	NR	5E-10				NR [~ 8900000] (imputed)	N
863	chr11	36458996	36458997	rs62621409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p12		rs62621409-?	NR	1E-8				NR [~ 8900000] (imputed)	N
863	chr11	36458996	36458997	rs62621409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p12		rs62621409-?	NR	3E-10				NR [~ 8900000] (imputed)	N
863	chr11	36473051	36473052	rs35407642	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	11p12	PRR5L	rs35407642-?	NR	2E-11		1.0729614	[1.05-1.1]	Illumina [13729857] (imputed)	N
863	chr11	36487596	36487597	rs11033641	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p12	TRAF6	rs11033641-?	NR	5E-6	(TAG 58:6)	0.24375744	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
863	chr11	36492190	36492191	rs570676	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		11p12	PRR5L, TRAF6	rs570676-?	0.6	9E-6		1.1494253		Illumina [90536]	N
863	chr11	36501786	36501787	rs331463	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11p12	TRAF6, RAG1/2	rs331463-A	0.15	6E-6	(EA)	0.10035	[0.057-0.144] unit decrease	Illumina [8380626] (imputed)	N
863	chr11	36501786	36501787	rs331463	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11p12	TRAF6, RAG1, RAG2	rs331463-T	0.87	3E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
863	chr11	36501786	36501787	rs331463	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11p12	TRAF6, RAG1, RAG2	rs331463-T	0.85	1E-7	(EA)	1.12	[1.07-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
863	chr11	36506868	36506869	rs10501157	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p12	NR	rs10501157-?	NR	7E-9	(Japanese)	0.8987	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
863	chr11	36524223	36524224	rs5030500	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs5030500-C	0.01742	4E-13	(AMACR)	0.06215	NR unit increase	Illumina [1671387] (imputed)	N
864	chr11	36584943	36584944	rs7107464	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	11p12	NR	rs7107464-T	0.91	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
865	chr11	36790684	36790685	rs1474107	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11p12	NR	rs1474107-?	NR	5E-10	(Japanese)	1.0047	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
866	chr11	36855387	36855388	rs11529293	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	11p12	CTD-2119L1.1	rs11529293-T	0.1184	3E-6		2.71476	[1.57-3.86] unit decrease	Illumina [6716580] (imputed)	N
866	chr11	36868286	36868287	rs2422370	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11p12	C11orf74	rs2422370-A	0.8205	6E-7		0.0104	[0.0063-0.0145] unit increase	Affymetrix [~ 7740000] (imputed)	N
866	chr11	36872763	36872764	rs77698332	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	11p12	C11orf74, LOC103312105	rs77698332-G	0.035	3E-6		2.12	[1.56-2.88]	Affymetrix [up to 27494467] (imputed)	N
867	chr11	36993745	36993746	rs11033892	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs11033892-?	NR	2E-15				Affymetrix [NR]	N
867	chr11	36998552	36998553	rs1398282	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p12		rs1398282-A	0.42	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
867	chr11	36998552	36998553	rs1398282	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p12		rs1398282-A	0.42	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
867	chr11	36998552	36998553	rs1398282	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p12	NR	rs1398282-A	0.4465	3E-10				NR [9056863] (imputed)	N
867	chr11	36998552	36998553	rs1398282	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p12	NR	rs1398282-A	0.4465	8E-14				NR [9056863] (imputed)	N
867	chr11	36998552	36998553	rs1398282	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 26)	19,670 European ancestry individuals	NA	11p12		rs1398282-?	NR	3E-14				NR [9705931] (imputed)	N
867	chr11	37001541	37001542	rs11033898	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11p12	NR	rs11033898-C	0.4015	6E-14	(Postcentral)	16.602968	[12.27-20.93] unit increase	Affymetrix, Illumina [NR]	N
867	chr11	37002820	37002821	rs10768240	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p12		rs10768240-T	0.42	7E-23		9.85	z score increase	Affymetrix [9061022] (imputed)	N
867	chr11	37012536	37012537	rs391317	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	11p12	Intergeic	rs391317-?	NR	5E-7	(MCP1-TNF-a pattern postfenofibrate)			Affymetrix [2543887] (imputed)	N
867	chr11	37036577	37036578	rs34931862	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	11p12	C11orf74	rs34931862-T	0.0233	2E-6		0.4142	[0.24-0.58] unit decrease	Illumina [up to 38043574] (imputed)	N
868	chr11	37137268	37137269	rs395297	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	11p12	Intergenic	rs395297-?		7E-6				NR [NR]	N
868	chr11	37160581	37160582	rs1599421	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p12	NR	rs1599421-?		9E-6				Illumina [4322238] (imputed)	N
868	chr11	37184337	37184338	rs10836699	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	11p12	intergenic	rs10836699-C	NR	4E-9		1.5384616	[1.19-2.38]	Affymetrix [~ 8000000] (imputed)	N
868	chr11	37213420	37213421	rs1461347	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs1461347-?	NR	8E-7				Affymetrix [NR]	N
868	chr11	37223675	37223676	rs150410476	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	11p12	C11orf74	rs150410476-?	NR	7E-7		8.31	3.60-19.16	Illumina [~ 18000000] (imputed)	N
869	chr11	37256189	37256190	rs11034036	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	11p12	C11orf74, LOC103312105	rs11034036-?	0.6223	2E-6		4.7393365		Affymetrix [757439]	N
869	chr11	37291357	37291358	rs75528631	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	11p12		rs75528631-G	NR	8E-6	(GLM)	3.0592	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
870	chr11	37440666	37440667	rs16930242	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	11p12	NR	rs16930242-G	0.93	7E-6	(AA)	6.49	[3.77-9.21] bpm decrease	Illumina [at least 1100000] (imputed)	N
871	chr11	37497515	37497516	rs11034161	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	11p12	NR	rs11034161-A	0.88	1E-6	(AA)	5.08	[3.1-7.06] bpm decrease	Illumina [at least 1100000] (imputed)	N
871	chr11	37515035	37515036	rs148230887	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	11p12		rs148230887-?	NR	7E-6		0.66	[0.37-0.95] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
871	chr11	37536124	37536125	rs138680314	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	11p12		rs138680314-?	NR	2E-10		2.6344	[1.82-3.45] unit decrease	Affymetrix [NR] (imputed)	N
871	chr11	37599782	37599783	rs11034246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p12	NR	rs11034246-?	NR	2E-6		4.738	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
872	chr11	37680438	37680439	rs11034351	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	11p12	NR	rs11034351-?		4E-6		1.92	[NR]	Illumina [NR] (imputed)	N
873	chr11	37870980	37870981	rs16930685	21478494	Nan H	2011-04-09	Hum Mol Genet	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	11p12	C11orf74	rs16930685-C	0.10	2E-6		0.1	[0.06-0.14] unit increase	Affymetrix, Illumina [2318094] (imputed)	N
875	chr11	38067949	38067950	rs139648188	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs139648188-C	0.0122	1E-8	(MAP4)	0.02213	NR unit increase	Illumina [1671387] (imputed)	N
875	chr11	38094637	38094638	rs35222414	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs35222414-T	0.0122	2E-8	(IGHM)	0.259	NR unit decrease	Illumina [1671387] (imputed)	N
875	chr11	38124913	38124914	rs10836930	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	11p12	NR	rs10836930-?	NR	5E-6		0.0189	[0.011-0.027] unit increase	Illumina [at least 560000] (imputed)	N
875	chr11	38130097	38130098	rs72957958	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11p12	NR	rs72957958-C	NR	7E-6	(GEE model)	0.84577	[0.48-1.21] unit increase	NR [NR] (imputed)	N
876	chr11	38208125	38208126	rs2061640	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs2061640-?	NR	2E-10				Affymetrix [NR]	N
876	chr11	38252690	38252691	rs150472774	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs150472774-C	0.0122	1E-8	(MAP4)	0.02213	NR unit increase	Illumina [1671387] (imputed)	N
877	chr11	38278949	38278950	rs5004866	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	11p12	intergenic	rs5004866-T		2E-6		0.3029	unit decrease	Illumina [5767231] (imputed)	N
877	chr11	38285500	38285501	rs10836945	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	11p12	LOC100129825, LOC100289139	rs10836945-G	0.48	8E-6	(AA)	2.1739	[NR]	Illumina [1795103]	N
877	chr11	38288592	38288593	rs11034653	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	11p12	LOC100132631	rs11034653-A		2E-7	(EA)			Illumina [NR]	N
877	chr11	38331371	38331372	rs142279805	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs142279805-A	0.01394	2E-9	(MAP4)	0.02199	NR unit increase	Illumina [1671387] (imputed)	N
877	chr11	38355739	38355740	rs7947940	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11p12	NR	rs7947940-?	NR	1E-5		3.71	[2.82-4.88]	Illumina [539000] (imputed)	N
877	chr11	38360064	38360065	rs7945882	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Caloranaerobacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	11p12		rs7945882-G	0.385953	4E-8		0.0335338	[0.022-0.045] unit decrease	Illumina [7980478] (imputed)	N
877	chr11	38360064	38360065	rs7945882	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Caloranaerobacter abundance in stool	5,959 Finnish ancestry individuals	NA	11p12		rs7945882-G	0.385953	4E-8		0.0357261	[0.023-0.048] unit decrease	Illumina [7980478] (imputed)	N
879	chr11	38565726	38565727	rs10837002	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	11p12	NR	rs10837002-C	0.65	4E-8		0.028	unit decrease	NR [2324712] (imputed)	N
879	chr11	38581039	38581040	rs7928395	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	11p12	NR	rs7928395-?	NR	6E-7				Illumina [5946283] (imputed)	N
880	chr11	38792872	38792873	rs118180988	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	11p12	NR	rs118180988-?	NR	9E-7		0.2215	[0.14-0.31] unit decrease	Illumina [at least 560000] (imputed)	N
881	chr11	38833247	38833248	rs3980104	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11p12		rs3980104-?	NR	5E-10		0.0174	unit decrease	NR [NR]	N
882	chr11	38949331	38949332	rs117590427	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	11p12	NR	rs117590427-?	NR	7E-6		0.4197	[0.24-0.6] unit increase	Illumina [at least 560000] (imputed)	N
882	chr11	39031792	39031793	rs7951105	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Free thyroxine concentration	2,789 Korean ancestry individuals	829 Korean ancestry individuals	11p12	intergenic	rs7951105-T	0.15	5E-7		0.161	[0.098-0.224] ng/dl decrease	Affymetrix [1418709] (imputed)	N
882	chr11	39052826	39052827	rs2861585	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	11p12		rs2861585-T	0.01	2E-6		1.97	unit increase	Affymetrix [NR] (imputed)	N
884	chr11	39250871	39250871	rs922501423	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs922501423-C	0.01045	1E-11	(CYB5R3)	0.1345	NR unit increase	Illumina [1671387] (imputed)	N
884	chr11	39279782	39279783	rs140642152	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p12	NR	rs140642152-C	0.0147	1E-6		0.0877	[0.052-0.123] unit decrease	Illumina [NR] (imputed)	N
885	chr11	39327958	39327959	rs12808199	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	11p12	LRRC4C	rs12808199-G	0.43	9E-7	(FN BMD, men)	0.21	[NR] g/cm2 decrease	Affymetrix [433510]	N
885	chr11	39426098	39426099	rs12292796	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	11p12	intergenic	rs12292796-C	0.07	3E-7	(drinks/week)	0.003	[-0.00288-0.00888] unit decrease	Affymetrix [2500000] (imputed)	N
886	chr11	39453645	39453646	rs3924282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p12	Intergenic	rs3924282-A	0.5917	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
887	chr11	39705911	39705912	rs79725145	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs79725145-T	0.01568	2E-9	(HMOX1)	0.02443	NR unit increase	Illumina [1671387] (imputed)	N
889	chr11	39908661	39908662	rs11035577	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	11p12	LRRC4C	rs11035577-?	NR	6E-6	(Dysthymic)	1.03	[NR] unit decrease	Affymetrix [703012]	N
889	chr11	39915233	39915234	rs2199409	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p12		rs2199409-T	0.7962	3E-9		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
889	chr11	39938809	39938810	rs7938370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p12		rs7938370-T	0.8066	3E-9	(conditional-joint)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
889	chr11	39940639	39940640	rs875837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p12	Intergenic	rs875837-A	0.193	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
889	chr11	39955797	39955798	rs10768562	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p12	NR	rs10768562-?	NR	4E-6		0.0080552	[0.0046-0.0115] unit increase	Affymetrix [805426] (imputed)	N
889	chr11	39971085	39971086	rs11035623	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	11p12	intergenic	rs11035623-T	0.929568	7E-6		2.7592254	NR	Illumina [5009928] (imputed)	N
891	chr11	40125665	40125666	rs372771487	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11p12	RP11-454H19.2	rs372771487-A	0.0094	2E-6		0.2113	[0.12-0.3] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
891	chr11	40149299	40149300	rs11606250	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11p12	NR	rs11606250-?	NR	1E-12		0.247477	[0.18-0.32] unit increase	NR [13958389] (imputed)	N
891	chr11	40149299	40149300	rs11606250	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p12	LRRC4C	rs11606250-?		1E-175				Affymetrix, Illumina [NR] (imputed)	N
891	chr11	40149299	40149300	rs11606250	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11p12	LRRC4C	rs11606250-?	NR	9E-66		1.183432	[1.16-1.21]	Illumina [13762925] (imputed)	N
891	chr11	40149304	40149305	rs11602008	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	11p12	LRRC4C	rs11602008-?	NR	6E-10		0.168856	[0.12-0.22] unit increase	NR [13958389] (imputed)	N
891	chr11	40149304	40149305	rs11602008	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	11p12	LRRC4C	rs11602008-?	NR	3E-10		0.138518	[0.095-0.182] unit increase	NR [13958389] (imputed)	N
891	chr11	40149304	40149305	rs11602008	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p12	NR	rs11602008-A		9E-51		0.22	[0.18-0.26] unit increase	NR [NR]	N
891	chr11	40149304	40149305	rs11602008	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	11p12	LRRC4C	rs11602008-?	0.162	1E-14		1.3049839	[1.21-1.41]	Affymetrix [NR] (imputed)	N
891	chr11	40149304	40149305	rs11602008	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11p12	LRRC4C	rs11602008-A	0.822	2E-44		13.978	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
891	chr11	40149304	40149305	rs11602008	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11p12	NR	rs11602008-A	0.838	3E-8	(EA)	0.1234	[0.079-0.167] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
891	chr11	40149304	40149305	rs11602008	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	11p12	NR	rs11602008-A	0.8294	5E-49		0.1349	[0.12-0.15] unit increase	Illumina [~ 10600000] (imputed)	N
891	chr11	40149624	40149624	rs5791358	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p12		rs5791358-CCCGCT	0.19008	2E-7		0.044861	[0.028-0.062] unit decrease	Affymetrix [15580782] (imputed)	N
891	chr11	40202483	40202484	rs78388484	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p12	NR	rs78388484-T		2E-8		0.23	[0.15-0.31] unit increase	NR [NR]	N
891	chr11	40207922	40207923	rs4075903	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	11p12	LRRC4C	rs4075903-?	NR	9E-6				Illumina [519442]	N
891	chr11	40210370	40210371	rs114169058	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p12	NR	rs114169058-T		2E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
891	chr11	40213472	40213473	rs146408274	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11p12	LRRC4C	rs146408274-G	NR	6E-6		1.32782	[0.75-1.9] unit decrease	Illumina [13520550] (imputed)	N
891	chr11	40225027	40225028	rs180682174	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p12	NR	rs180682174-?	NR	2E-8				Illumina [7760689] (imputed)	N
892	chr11	40240192	40240196	rs1391632253	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs1391632253-T	0.02962	3E-9	(UCHL3)	0.00991	NR unit decrease	Illumina [1671387] (imputed)	N
892	chr11	40264615	40264616	rs140691861	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs140691861-C	0.01045	2E-8	(OAT)	0.08249	NR unit increase	Illumina [1671387] (imputed)	N
892	chr11	40306480	40306481	rs1377104	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC4C	5,352 Icelandic ancestry individuals	NA	11p12		rs1377104-G	0.4632	3E-13		0.128594	[0.094-0.163] unit increase	Illumina [7506463] (imputed)	N
892	chr11	40310788	40310789	rs998447	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p12	LRRC4C	rs998447-A	0.53796875	2E-8	(LRRC4C, 9369_174_3)	0.13745637	[0.089-0.185] unit decrease	Illumina [> 1000000] (imputed)	N
892	chr11	40358179	40358180	rs10742539	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p12	NR	rs10742539-C	0.01742	2E-8	(UCHL3)	0.01348	NR unit decrease	Illumina [1671387] (imputed)	N
893	chr11	40382881	40382882	rs12418938	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LRRC4C	rs12418938-?	NR	3E-8		1.63418	[NR] unit decrease	Affymetrix [NR] (imputed)	N
893	chr11	40476205	40476206	rs10837417	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11p12	NR	rs10837417-C	0.367	4E-7	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
894	chr11	40547615	40547616	rs11035895	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	11p12	NR	rs11035895-G	0.827943	5E-9		0.993	[0.991, 0.995]	Affymetrix [39302896] (imputed)	N
894	chr11	40558652	40558653	rs80278672	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	11p12	NR	rs80278672-T	0.1	7E-6		1.12	[1.06-1.18]	Illumina [8468885] (imputed)	N
895	chr11	40645880	40645881	rs184852128	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p12	LRRC4C	rs184852128-T	1.0	1E-6	(AA)	0.432	unit increase	Illumina [NR] (imputed)	N
895	chr11	40645880	40645881	rs184852128	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p12	LRRC4C	rs184852128-T	1.0	1E-6	(AA)	2.156	NR unit increase	Illumina [NR] (imputed)	N
895	chr11	40677143	40677144	rs11035996	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	11p12	LRRC4C	rs11035996-T	NR	9E-6		0.1	[0.057-0.143] unit decrease	Illumina [NR] (imputed)	N
895	chr11	40684375	40684376	rs1495299	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	11p12	NR	rs1495299-?	NR	3E-6		0.11448	[0.066-0.163] unit increase	NR [13958389] (imputed)	N
895	chr11	40700241	40700242	rs191959849	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		11p12	LRRC4C	rs191959849-A	0.0147436	4E-6		1.86168	[1.08-2.64] unit decrease	Illumina [640625] (imputed)	N
895	chr11	40708558	40708559	rs7118513	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	11p12		rs7118513-A	NR	8E-7		1.14	[1.08-1.2]	Illumina [7105229] (imputed)	N
896	chr11	40837712	40837713	rs4611189	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	11p12	intergenic	rs4611189-?	0.03	6E-7	(quetiapine)			Affymetrix [492900]	N
896	chr11	40876585	40876586	rs78015633	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p12	NR	rs78015633-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
897	chr11	40911581	40911582	rs4612793	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs4612793-?	NR	1E-12				Affymetrix [NR]	N
897	chr11	40916975	40916976	rs118140307	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Diastolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	11p12	LRRC4C	rs118140307-C	NR	5E-8	(EA)	7.1643	NR unit increase	Illumina [NR] (imputed)	N
897	chr11	40939951	40939952	rs149686651	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	11p12		rs149686651-A	NR	2E-6		0.183	unit decrease	Illumina [NR] (imputed)	N
897	chr11	40983188	40983189	rs183497996	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	11p12		rs183497996-?	NR	2E-8		2.689	[1.75-3.63] unit increase	Affymetrix [NR] (imputed)	N
897	chr11	41005466	41005467	rs355214	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	11p12	LRRC4C	rs355214-G	NR	1E-6		1.417		Illumina [592007] (imputed)	N
898	chr11	41033102	41033103	rs1462231	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p12	LRRC4C	rs1462231-?		6E-6				Illumina [4322238] (imputed)	N
898	chr11	41066276	41066277	rs1462220	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p12		rs1462220-G	0.514	3E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
898	chr11	41068899	41068900	rs12224794	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer	up to 2,843 European ancestry cases without distant metastases, up to 462 European ancestry cases with distant metastases, up to 189 European ancestry cases of unknown stage	up to 3,205 European ancestry cases without distant metastases, up to 435 European ancestry cases with distant metastases, up to 124 European ancestry cases of unknown stage	11p12	LRRC4C	rs12224794-?	0.55	3E-6	(Overall Survival)	1.1494253	[1.09-1.22]	Illumina [~ 2700000] (imputed)	N
898	chr11	41090929	41090930	rs11511923	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p12	LRRC4C	rs11511923-T	0.33	7E-10		0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
898	chr11	41137698	41137699	rs7124946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p12		rs7124946-?	NR	5E-8				NR [~ 8900000] (imputed)	N
898	chr11	41155896	41155897	rs10444280	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p12	Intergenic	rs10444280-T	0.8037	6E-9	(MTAG)	0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
898	chr11	41155896	41155897	rs10444280	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p12		rs10444280-T	0.7982	1E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
898	chr11	41155896	41155897	rs10444280	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p12	Intergenic	rs10444280-T	0.7982	1E-9	(MTAG)	0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
899	chr11	41219413	41219414	rs12421301	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	11p12	NR	rs12421301-?	NR	1E-6		0.05138	[0.031-0.072] unit decrease	Affymetrix [9658292] (imputed)	N
899	chr11	41225432	41225433	rs2862035	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p12	NR	rs2862035-C	0.0246322445734703	8E-6	(IGP18)	0.4382	[0.25-0.63] unit decrease	Illumina [~ 2500000] (imputed)	N
899	chr11	41225953	41225954	rs980952	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p12	NR	rs980952-G	0.975374875668449	5E-6	(IGP25)	0.4489	[0.26-0.64] unit increase	Illumina [~ 2500000] (imputed)	N
899	chr11	41256893	41256894	rs10768673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p12		rs10768673-?	NR	1E-7				NR [~ 8900000] (imputed)	N
899	chr11	41259179	41259180	rs729210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11p12	Intergenic	rs729210-T	0.1929	3E-9	(MTAG)	0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
900	chr11	41294588	41294589	rs10837608	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	11p12	LRRC4C, RPL9P23	rs10837608-A	0.16	9E-7		0.37	[0.21-0.53] unit increase	Illumina [8454806] (imputed)	N
900	chr11	41360861	41360862	rs12270847	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11p12	API5	rs12270847-?	NR	6E-6	(carnosine)	0.35432774	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
900	chr11	41396537	41396538	rs11036373	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (early onset)(pleiotropy)	326 European ancestry cases, 4,320 European ancestry controls	NA	11p12	LRRC4C	rs11036373-?	NR	8E-7		1.9	1.48-2.46	Illumina [959859] (imputed)	N
900	chr11	41418260	41418261	rs1506719	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p12	LRRC4C	rs1506719-T	0.507	2E-8		0.01448182	[0.0094-0.0195] unit increase	Affymetrix [~ 11515000] (imputed)	N
901	chr11	41436296	41436297	rs2939756	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11p12	LRRC4C	rs2939756-A	0.4805	3E-9		0.011942013	[0.008-0.0159] unit decrease	Affymetrix [11514654] (imputed)	N
901	chr11	41436296	41436297	rs2939756	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p12	NR	rs2939756-A	0.48	7E-10		0.015699685	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
901	chr11	41436296	41436297	rs2939756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11p12		rs2939756-?	NR	4E-12				NR [~ 8900000] (imputed)	N
901	chr11	41443471	41443472	rs2939755	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p12	NR	rs2939755-?	NR	7E-6		4.509	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
901	chr11	41484392	41484393	rs1506724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p12	Intergenic	rs1506724-T	0.3427	8E-11	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
901	chr11	41501878	41501879	rs11036413	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p12	NR	rs11036413-T	0.341	1E-14		0.00876876	[0.0065-0.011] unit decrease	NR [9732723] (imputed)	N
901	chr11	41501878	41501879	rs11036413	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11p12	NR	rs11036413-T	0.334	8E-9		0.00893847	[0.0059-0.012] unit increase	NR [9732723] (imputed)	N
901	chr11	41513703	41513704	rs12273007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p12	Intergenic	rs12273007-A	0.6019	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr11	41520582	41520583	rs12573886	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11p12	NR	rs12573886-?	NR	1E-8		7566.433	NR unit decrease	Illumina [2379855]	N
901	chr11	41523592	41523593	rs10837650	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p12		rs10837650-C	0.666	1E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
901	chr11	41548955	41548956	rs10742591	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p12		rs10742591-A	0.6097	4E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
902	chr11	41577267	41577268	rs140920627	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (anhedonia) (ordinal trait)	148,752 European ancestry individuals	NA	11p12	RP11-124G5.3	rs140920627-C	0.988	1E-8		0.054	[0.034-0.074] unit decrease	NR [9413637] (imputed)	N
902	chr11	41577267	41577268	rs140920627	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (anhedonia) (binary trait)	27,288 European ancestry cases, 121,464 European ancestry controls	NA	11p12	RP11-124G5.3	rs140920627-?	0.988	4E-8		0.037	[0.023-0.051] unit decrease	NR [9413637] (imputed)	N
904	chr11	41820449	41820450	rs10768747	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	11p12	intergenic	rs10768747-?	NR	5E-6	AA	1.66	[NR]	Illumina [up to 5616481] (imputed)	N
904	chr11	41852663	41852664	rs1484948	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	11p12	intergenic	rs1484948-G	0.32	2E-6		0.16	[0.10-0.22] unit increase	Illumina [~ 318327]	N
904	chr11	41915365	41915366	rs9300039	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	11p12	intergenic	rs9300039-C	0.89	6E-8		1.48	[1.28-1.71]	Illumina [315635]	N
905	chr11	42046805	42046806	rs11036663	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs11036663-?	NR	2E-12				Affymetrix [NR]	N
906	chr11	42152739	42152740	rs78844412	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced alopecia in inflammatory bowel disease	81 Japanese ancestry cases, 1,139 Japanese ancestry controls	NA	11p12	Intergenic	rs78844412-?	NR	6E-7		6.9	[3.2-14.8]	Affymetrix [> 5000000] (imputed)	N
907	chr11	42225826	42225827	rs77124415	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	11p12	NR	rs77124415-C	NR	5E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
907	chr11	42315885	42315886	rs7394570	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	11p12	LOC387761	rs7394570-?		1E-6	(EA)			Illumina [NR]	N
908	chr11	42378925	42378926	rs10400317	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11p12	NR	rs10400317-T	0.5858	8E-7	(Cis/trans-18:2, EA)	0.0054	[0.0032-0.0076] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
908	chr11	42433552	42433553	rs11600450	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p12	NR	rs11600450-G	0.443	7E-11		0.00706068	[0.0049-0.0092] unit increase	NR [9732723] (imputed)	N
908	chr11	42442825	42442826	rs1381775	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p12	NR	rs1381775-C	0.712	3E-8		0.015614667	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
909	chr11	42514506	42514507	rs2169543	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	11p12		rs2169543-C	NR	4E-6		4.5980363	z score increase	Affymetrix, Illumina [NR] (imputed)	N
909	chr11	42548519	42548520	rs58867452	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11p12	LOC100507205	rs58867452-T	0.0969	2E-6		0.0119	[0.007-0.0168] unit increase	Affymetrix [~ 7740000] (imputed)	N
910	chr11	42625363	42625364	rs75670607	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	11p12	NR	rs75670607-?	NR	6E-6		0.2188	[0.13-0.31] unit increase	Illumina [at least 560000] (imputed)	N
910	chr11	42711420	42711421	rs189977224	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	11p12	LOC100507205, HNRNPKP3	rs189977224-?	NR	7E-7		0.129	[0.078-0.18] unit decrease	Affymetrix, Illumina [8037763] (imputed)	N
910	chr11	42726068	42726069	rs147206860	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	11p12	NR	rs147206860-C		4E-6		0.8134	[0.47-1.16] SD units increase	NR [10700000] (imputed)	N
911	chr11	42738722	42738723	rs142850025	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	11p12	intergenic	rs142850025-G	NR	6E-6	(Fixed effect)	0.19	[0.11-0.27] unit decrease	Illumina [4736131] (imputed)	N
911	chr11	42765618	42765619	rs142207013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p12		rs142207013-C	0.970573	2E-8		0.0666269	[0.043-0.09] unit decrease	NR [11722792] (imputed)	N
911	chr11	42765618	42765619	rs142207013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11p12		rs142207013-C	0.970573	3E-8		0.0678509	[0.044-0.092] unit increase	NR [11722792] (imputed)	N
911	chr11	42772755	42772756	rs4558156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p12		rs4558156-?	NR	2E-8				NR [~ 8900000] (imputed)	N
911	chr11	42781631	42781632	rs73518789	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11p12	NR	rs73518789-?	NR	6E-7		0.309901	[0.19-0.43] unit increase	NR [13958389] (imputed)	N
911	chr11	42806726	42806727	rs75995702	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion in depression	2,675 European ancestry responder cases, 1,861 European ancestry non-responder cases	NA	11p12	API5	rs75995702-?		7E-7		12.857	[3.496-47.288]	Illumina [~ 12000000] (imputed)	N
911	chr11	42856867	42856868	rs6485361	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11p12	NR	rs6485361-?	NR	8E-6		0.004031	[0.0023-0.0058] unit increase	Affymetrix [9658292] (imputed)	N
912	chr11	42869800	42869801	rs7937669	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	11p12	LRRC4C-API5	rs7937669-T	0.338	5E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
912	chr11	42874001	42874002	rs4129601	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	11p12	intergenic	rs4129601-G	0.03	2E-6			[NR]	Affymetrix [398699]	N
912	chr11	42906813	42906814	rs7931109	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p12	NR	rs7931109-?	NR	1E-17				Affymetrix [NR]	N
912	chr11	42916858	42916859	rs4572134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p12	Intergenic	rs4572134-A	0.5633	6E-9	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
912	chr11	42984752	42984753	rs7480166	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	11p12	CTD-2537L20.1	rs7480166-A	0.4038	4E-6		1.86279	[1.07-2.66] unit decrease	Illumina [6716580] (imputed)	N
913	chr11	43046642	43046643	rs7126821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11p12	Intergenic	rs7126821-C	0.6011	4E-10	(MTAG)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
913	chr11	43046642	43046643	rs7126821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11p12	Intergenic	rs7126821-C	0.6011	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
913	chr11	43086093	43086094	rs10501293	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11p12	API5	rs10501293-?	0.2494	5E-6	(SWM strategy)			Illumina [475971]	N
914	chr11	43157216	43157217	rs11037258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p12	Intergenic	rs11037258-A	0.9272	1E-8	(MTAG)	0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
914	chr11	43166841	43166842	rs569584007	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	11p12	API5	rs569584007-?		9E-8	(model 2)	10.48	[4.42-24.83]	Illumina [29610185] (imputed)	N
914	chr11	43236060	43236061	rs12365397	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	11p12	intergenic	rs12365397-?	0.68	9E-6		1.05	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
915	chr11	43283180	43283181	rs79895267	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p12	Intergenic	rs79895267-A	0.9749	2E-9	(MTAG)	0.0316	[0.021-0.042] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
915	chr11	43287715	43287716	rs7103863	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p12	NR	rs7103863-G		1E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
915	chr11	43296793	43296794	rs11037404	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p12	API5, TTC17, EXT2	rs11037404-?		2E-24				Affymetrix, Illumina [NR] (imputed)	N
915	chr11	43307810	43307811	rs7107014	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11p12	HNRNPKP3, API5	rs7107014-A	0.4973	5E-8		5.459	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
916	chr11	43499554	43499555	rs1115492	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p11.2	NR	rs1115492-?	NR	3E-6				Affymetrix [NR]	N
916	chr11	43505706	43505707	rs7934094	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		11p11.2	TTC17	rs7934094-?	NR	3E-10		0.0081	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
916	chr11	43505706	43505707	rs7934094	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	11p11.2	TTC17	rs7934094-G	0.22	3E-13		0.0083	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
916	chr11	43514930	43514931	rs7937127	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		11p11.2	TTC17	rs7937127-?	NR	2E-10		0.0083	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
917	chr11	43532200	43532201	rs4755713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs4755713-?	NR	2E-12				NR [~ 8900000] (imputed)	N
917	chr11	43551095	43551096	rs11037464	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs11037464-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
917	chr11	43576066	43576067	rs11037473	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	11p11.2	TTC17, HSD17B12	rs11037473-A	0.07	1E-6		0.069	[0.042-0.096] unit decrease	Affymetrix, Illumina [2201971] (imputed)	N
917	chr11	43603299	43603300	rs11820132	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	11p11.2	MIR670	rs11820132-C	0.44	2E-9		0.0224	[0.015-0.03] unit decrease	Illumina [~ 250000] (imputed)	N
917	chr11	43605303	43605304	rs2679053	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11p11.2	MIR129-2	rs2679053-A	0.404	1E-7		0.034	[0.02-0.048] unit increase	Affymetrix [7947838] (imputed)	N
917	chr11	43607182	43607183	rs145993662	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	11p11.2		rs145993662-?	NR	9E-9		2.1317	[1.41-2.86] unit decrease	Affymetrix [NR] (imputed)	N
917	chr11	43608834	43608835	rs1023955	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	11p11.2		rs1023955-G	NR	3E-7		0.00413364	[0.0026-0.0057] years increase	NR [7400000] (imputed)	N
917	chr11	43610731	43610732	rs2625390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p11.2		rs2625390-T	NR	3E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
917	chr11	43619937	43619938	rs4755202	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	11p11.2	NR	rs4755202-A	NR	2E-8		0.01152	[0.0075-0.0155] unit increase	Illumina [~ 540852]	N
917	chr11	43620007	43620008	rs55670730	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	11p11.2	N/A	rs55670730-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
917	chr11	43628748	43628749	rs4755720	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	HSD17B12	rs4755720-C	0.39257	1E-8		0.0110921	[0.0073-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
917	chr11	43628748	43628749	rs4755720	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.2	NR	rs4755720-C	0.392505	1E-14		0.0161336	[0.012-0.02] unit increase	NR [NR]	N
917	chr11	43628748	43628749	rs4755720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p11.2		rs4755720-?	NR	2E-16				NR [~ 8900000] (imputed)	N
917	chr11	43628748	43628749	rs4755720	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p11.2	NA	rs4755720-T	0.6112	4E-13		0.0132	[0.0097-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
917	chr11	43628748	43628749	rs4755720	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	11p11.2	HSD17B12	rs4755720-T	0.6084	6E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
917	chr11	43633207	43633208	rs139675748	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p11.2	Intergenic	rs139675748-T	NR	2E-9	(between families)	6.022	unit increase	Affymetrix [up to 15107142] (imputed)	N
917	chr11	43634972	43634973	rs10838137	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs10838137-?	NR	6E-6	(male)	0.12538	[0.071-0.18] unit decrease	Affymetrix [7794483] (imputed)	N
917	chr11	43634972	43634973	rs10838137	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs10838137-?	NR	1E-9		0.13665	[0.093-0.181] unit decrease	Affymetrix [7794483] (imputed)	N
917	chr11	43637974	43637975	rs4755725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	11p11.2		rs4755725-C	0.33	1E-7		0.009	nmol/L decrease	NR [NR] (imputed)	N
917	chr11	43637974	43637975	rs4755725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p11.2		rs4755725-C	0.33	7E-18				NR [NR] (imputed)	N
917	chr11	43637974	43637975	rs4755725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11p11.2		rs4755725-C	0.33	7E-7		0.01	mmol/L decrease	NR [NR] (imputed)	N
917	chr11	43637974	43637975	rs4755725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p11.2		rs4755725-C	0.33	3E-26		0.017	% increase	NR [NR] (imputed)	N
917	chr11	43637974	43637975	rs4755725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	11p11.2		rs4755725-C	0.33	4E-9		0.013	U/L increase	NR [NR] (imputed)	N
917	chr11	43642129	43642130	rs4755726	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs4755726-T	NR	1E-10		0.018	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
917	chr11	43642129	43642130	rs4755726	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p11.2	NR	rs4755726-T	0.30427542745583	7E-9		0.01696129	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
918	chr11	43648367	43648368	rs4237643	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	11p11.2	HSD17B12	rs4237643-T	0.311	4E-8	(EA)	16.666	[10.74-22.59] ml decrease	Affymetrix, Illumina [2762059] (imputed)	N
918	chr11	43653832	43653833	rs2862996	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p11.2	NA	rs2862996-T	0.7012	4E-35		0.0216	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
918	chr11	43653832	43653833	rs2862996	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p11.2	NA	rs2862996-T	0.7012	4E-35		0.0216	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
918	chr11	43656534	43656535	rs2862961	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p11.2	NA	rs2862961-A	0.6978	6E-34		0.0224	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
918	chr11	43665856	43665857	rs10742682	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	11p11.2	HSD17B12	rs10742682-T	0.43354	1E-7	(European American)	1.24	[1.15-1.34]	Illumina [7968453] (imputed)	N
918	chr11	43667624	43667625	rs10742683	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	11p11.2	NR	rs10742683-A	0.415	5E-8		0.01348842	[0.0086-0.0183] unit decrease	NR [~ 10000000] (imputed)	N
918	chr11	43673369	43673370	rs77677460	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep start time	90,515 individuals	NA	11p11.2	MIR129-2, HSD17B12	rs77677460-G	NR	1E-8		0.471	[0.31-0.63] unit increase	NR [11024754] (imputed)	N
918	chr11	43690716	43690717	rs17596617	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11p11.2	HSD17B12	rs17596617-T	0.3172	4E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
918	chr11	43690716	43690717	rs17596617	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11p11.2	HSD17B12	rs17596617-T	0.3172	1E-13		0.0185	[0.014-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
918	chr11	43692422	43692423	rs59227842	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p11.2	HSD17B12	rs59227842-A	0.688473	2E-24		0.0152449	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
918	chr11	43692422	43692423	rs59227842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs59227842-?	NR	1E-28				Affymetrix [~ 8270000] (imputed)	N
918	chr11	43692422	43692423	rs59227842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs59227842-?	NR	4E-28				NR [~ 8900000] (imputed)	N
918	chr11	43693109	43693110	rs35060985	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p11.2	NR	rs35060985-A	0.3163	3E-18		0.02335422	[0.018-0.029] unit increase	Affymetrix [10549349] (imputed)	N
918	chr11	43696315	43696316	rs6485443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p11.2		rs6485443-?	NR	2E-16				NR [~ 8900000] (imputed)	N
918	chr11	43696916	43696917	rs7116641	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11p11.2	HSD17B12	rs7116641-T	0.6877	1E-8		0.0314	[0.021-0.042] unit decrease	Affymetrix [at least 7947838] (imputed)	N
918	chr11	43697159	43697160	rs35176357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p11.2		rs35176357-T	NR	2E-11		0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
918	chr11	43719100	43719101	rs7928523	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11p11.2	HSD17B12	rs7928523-?	NR	3E-8		0.0306067	[0.02-0.041] unit increase	Illumina [4804024] (imputed)	N
918	chr11	43728329	43728330	rs11037575	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	11p11.2	HSD17B12	rs11037575-C	0.407	5E-8		1.231	[NR]	Illumina [426697]	N
918	chr11	43729852	43729853	rs56130800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p11.2	RP11-472I20.4, HSD17B12	rs56130800-A	0.3181	4E-7		0.0367	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
918	chr11	43729852	43729853	rs56130800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11p11.2	RP11-472I20.4, HSD17B12	rs56130800-A	0.3181	4E-7		0.0367	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
918	chr11	43740421	43740422	rs6485450	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11p11.2	NR	rs6485450-?		8E-6	(SERPINE1)	0.4475	[NR] unit increase	Illumina [NR]	N
918	chr11	43769286	43769287	rs7115856	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	11p11.2	HSD17B12	rs7115856-?	NR	7E-8				NR [~ 24000000] (imputed)	N
918	chr11	43769286	43769287	rs7115856	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	11p11.2		rs7115856-C	0.4613	1E-9		0.01489	[0.01-0.02] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
918	chr11	43771083	43771084	rs34804222	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11p11.2	HSD17B12	rs34804222-A	0.59362	2E-13		0.0151301	[0.011-0.019] unit decrease	NR [16516521] (imputed)	N
919	chr11	43791864	43791865	rs4755737	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	11p11.2	NR	rs4755737-A	NR	4E-9		0.01207	[0.0081-0.0161] unit increase	Illumina [~ 540852]	N
919	chr11	43795419	43795420	rs11606658	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	11p11.2	HSD17B12	rs11606658-C	0.45535	4E-7		1.0784233	[1.04-1.11]	NR [NR] (imputed)	N
919	chr11	43800473	43800474	rs4592416	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11p11.2	NR	rs4592416-G	NR	2E-10		0.798	unit increase	Affymetrix [14661600] (imputed)	N
919	chr11	43808273	43808274	rs35521277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p11.2		rs35521277-?	NR	3E-11				NR [~ 8900000] (imputed)	N
919	chr11	43824632	43824633	rs1518814	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11p11.2	NR	rs1518814-?	NR	1E-6				Affymetrix [NR]	N
919	chr11	43839430	43839431	rs7114842	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p11.2		rs7114842-A	0.725	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
919	chr11	43839430	43839431	rs7114842	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p11.2	NR	rs7114842-C	0.291	1E-9		0.00724245	[0.0049-0.0096] unit increase	NR [9732723] (imputed)	N
919	chr11	43839430	43839431	rs7114842	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p11.2	NR	rs7114842-C	0.295	4E-9		0.014098	[0.0094-0.0188] unit increase	NR [9732723] (imputed)	N
919	chr11	43849912	43849913	rs9651614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p11.2		rs9651614-T	NR	2E-22		0.0177	[0.014-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
919	chr11	43849912	43849913	rs9651614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p11.2		rs9651614-T	NR	1E-21		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
919	chr11	43863329	43863330	rs16937651	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	11p11.2	NR	rs16937651-?	NR	1E-6		0.219995	[0.13-0.31] unit increase	NR [13958389] (imputed)	N
919	chr11	43864277	43864278	rs2176598	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs2176598-T	NR	1E-9		0.018	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
919	chr11	43864277	43864278	rs2176598	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	11p11.2	HSD17B12	rs2176598-T	NR	1E-6	(additive model)	0.023	[0.013-0.033] unit increase	NR [9288881] (imputed)	N
919	chr11	43864277	43864278	rs2176598	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p11.2	NR	rs2176598-T	0.252385805925411	1E-8		0.017458763	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
919	chr11	43864277	43864278	rs2176598	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	HSD17B12	rs2176598-T	0.256	3E-8		0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
919	chr11	43864277	43864278	rs2176598	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	HSD17B12	rs2176598-T	0.252	4E-7	(EA, men)	0.024	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
919	chr11	43864277	43864278	rs2176598	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	HSD17B12	rs2176598-T	0.251	3E-8	(EA)	0.02	[0.013-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
919	chr11	43864940	43864941	rs117242440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs117242440-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
919	chr11	43865713	43865714	rs142754737	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	11p11.2		rs142754737-T	NR	2E-8		0.330861	[0.22-0.45] unit increase	Affymetrix [10900000] (imputed)	N
919	chr11	43865713	43865714	rs142754737	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	1,877 women	NA	11p11.2		rs142754737-T	NR	2E-7		0.571688	[0.36-0.79] unit increase	Affymetrix [10900000] (imputed)	N
919	chr11	43865713	43865714	rs142754737	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	11p11.2	NR	rs142754737-T	0.014	9E-9	(women)	0.798375	[0.53-1.07] unit increase	Affymetrix [up to 8900000] (imputed)	N
919	chr11	43865713	43865714	rs142754737	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	11p11.2	NR	rs142754737-T	0.014	7E-7		0.345894	[0.21-0.48] unit increase	Affymetrix [up to 8900000] (imputed)	N
919	chr11	43876697	43876698	rs11555762	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p11.2	HSD17B12	rs11555762-T	0.3104	5E-14		0.014	[0.01-0.018] unit increase	Illumina [246328]	N
919	chr11	43877933	43877934	rs1061810	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p11.2	HSD17B12	rs1061810-A	0.288	6E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
919	chr11	43877933	43877934	rs1061810	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	11p11.2	HSD17B12	rs1061810-A	0.28	4E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
919	chr11	43878458	43878459	rs35251247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p11.2	NR	rs35251247-G	0.7065	2E-13		0.0309	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
919	chr11	43879539	43879540	rs11037685	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs11037685-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
919	chr11	43883463	43883464	rs73540482	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC087521.2	rs73540482-?	NR	2E-8	(male)	0.991333	[NR] unit decrease	Affymetrix [NR] (imputed)	N
919	chr11	43893221	43893222	rs7111582	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11p11.2	HSD17B12, ALKBH3	rs7111582-G	0.10440000000000005	4E-14		1.0403662		Affymetrix [11880941] (imputed)	N
919	chr11	43893221	43893222	rs7111582	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p11.2	HSD17B12, ALKBH3	rs7111582-G	0.10440000000000005	4E-14		1.0395626		Affymetrix [11880941] (imputed)	N
919	chr11	43899600	43899601	rs2434467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs2434467-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
919	chr11	43899600	43899601	rs2434467	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p11.2	NA	rs2434467-T	0.342	2E-11		0.012	[0.0085-0.0155] unit increase	NR [~ 27400000] (imputed)	N
919	chr11	43902680	43902681	rs34239319	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p11.2		rs34239319-T	0.1018	6E-12		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
920	chr11	43926349	43926350	rs11037728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p11.2		rs11037728-?	NR	3E-15				NR [~ 8900000] (imputed)	N
920	chr11	43932336	43932336	rs558823932	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ALKBH3	rs558823932-?	NR	1E-9	(male)	1.11748	[NR] unit decrease	Affymetrix [NR] (imputed)	N
920	chr11	43934591	43934592	rs7115013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs7115013-?	NR	5E-11				NR [~ 8900000] (imputed)	N
920	chr11	43937088	43937089	rs10838201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs10838201-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
920	chr11	43944387	43944388	rs868784	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p11.2	C11orf96	rs868784-G	0.619098	3E-8		0.00787224	[0.0051-0.0106] unit increase	Affymetrix [12370749]	N
920	chr11	43947347	43947348	rs4755757	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC087521.3	rs4755757-?	NR	1E-9	(male)	1.1094	[NR] unit decrease	Affymetrix [NR] (imputed)	N
920	chr11	44018606	44018607	rs6485486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs6485486-?	NR	2E-8				NR [~ 8900000] (imputed)	N
920	chr11	44030782	44030783	rs74482535	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.2	C11orf96, ACCSL	rs74482535-C		1E-9		0.271	unit increase	Affymetrix [at least 2696785] (imputed)	N
921	chr11	44041841	44041841	rs35968670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p11.2		rs35968670-CT	NR	2E-10		0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
921	chr11	44041841	44041841	rs35968670	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	ACCSL	rs35968670-CT	0.3073	1E-9		0.1613	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
921	chr11	44087988	44087989	rs2074038	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	11p11.2	ACCS	rs2074038-T	0.288	4E-9		1.136	[1.089-1.185]	Illumina [3792949] (imputed)	N
921	chr11	44145587	44145588	rs4494297	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p11.2	EXT2	rs4494297-T	0.0107802390322982	7E-10	(F_Sutterellaceae_HB)	1.93973	[1.32-2.56] unit decrease	Illumina [7711310] (imputed)	N
922	chr11	44171455	44171456	rs4551754	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p11.2	NR	rs4551754-C	0.308443	2E-14		0.0255546	[0.019-0.032] unit increase	NR [19129689] (imputed)	N
922	chr11	44233956	44233957	rs6485503	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.2	EXT2	rs6485503-T	0.9162	8E-6		0.0521	[0.029-0.075] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
922	chr11	44239600	44239601	rs12577376	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11p11.2	NR	rs12577376-?	NR	6E-9		5.828	NR z score decrease	Illumina [at least 830937] (imputed)	N
922	chr11	44285430	44285431	rs117526668	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	11p11.2	NR	rs117526668-T	NR	9E-6	(phenotype 1)	3.19	[NR]	Illumina [> 8000000] (imputed)	N
922	chr11	44285430	44285431	rs117526668	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	11p11.2	NR	rs117526668-T	NR	9E-6	(phenotype 3)	3.19	[NR]	Illumina [> 8000000] (imputed)	N
922	chr11	44289434	44289435	rs10769025	29998114	Gadad BS	2018-05-03	Mol Neuropsychiatry	Association of Novel ALX4 Gene Polymorphisms with Antidepressant Treatment Response: Findings from the CO-MED Trial.	Response to antidepressants in depression	112 European ancestry responders, 98 European ancestry non-responders	NA	11p11.2	ALX4	rs10769025-?	NR	1E-7	(escitalopram + placebo)			Illumina [232877]	N
922	chr11	44289434	44289435	rs10769025	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	11p11.2	ALX4	rs10769025-?		1E-7				Illumina [479403]	N
923	chr11	44330609	44330610	rs66716358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p11.2		rs66716358-T	0.47	3E-41		13.46	z score increase	Affymetrix [9061022] (imputed)	N
923	chr11	44330609	44330610	rs66716358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p11.2		rs66716358-T	0.47	7E-24		10.08	z score increase	Affymetrix [9061022] (imputed)	N
923	chr11	44330609	44330610	rs66716358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p11.2		rs66716358-T	0.47	9E-21		9.34	z score increase	Affymetrix [9061022] (imputed)	N
923	chr11	44330609	44330610	rs66716358	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p11.2	NR	rs66716358-T	0.4992	1E-17				NR [9056863] (imputed)	N
923	chr11	44330609	44330610	rs66716358	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p11.2	NR	rs66716358-T	0.4992	1E-17				NR [9056863] (imputed)	N
923	chr11	44330609	44330610	rs66716358	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11p11.2	SMARCAD1	rs66716358-?		4E-12				NR [7428630] (imputed)	N
923	chr11	44330609	44330610	rs66716358	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p11.2	ALX4	rs66716358-?		3E-14				NR [7428630] (imputed)	N
923	chr11	44330609	44330610	rs66716358	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA	11p11.2	ALX4	rs66716358-?	NR	6E-6				Affymetrix [536506]	N
923	chr11	44330609	44330610	rs66716358	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	11p11.2	ALX4	rs66716358-?	NR	8E-13		0.027	[0.034-0.019] unit decrease	Illumina [12039491] (imputed)	N
923	chr11	44331308	44331309	rs12421995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p11.2		rs12421995-?	NR	2E-18				NR [~ 8900000] (imputed)	N
923	chr11	44331508	44331509	rs3824915	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	11p11.2		rs3824915-?	NR	3E-15				NR [9705931] (imputed)	N
923	chr11	44331508	44331509	rs3824915	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	11p11.2		rs3824915-G	NR	2E-22		0.0107517	[0.0086-0.0129] years increase	NR [7400000] (imputed)	N
923	chr11	44331508	44331509	rs3824915	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	11p11.2		rs3824915-G	NR	4E-8		0.00378694	[0.0024-0.0051] years decrease	NR [7400000] (imputed)	N
923	chr11	44331508	44331509	rs3824915	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	11p11.2		rs3824915-G	NR	3E-14		0.00676885	[0.005-0.0085] years decrease	NR [7400000] (imputed)	N
923	chr11	44331508	44331509	rs3824915	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11p11.2		rs3824915-G	NR	1E-20		0.030270495	[0.024-0.037] years increase	NR [7400000] (imputed)	N
923	chr11	44336937	44336938	rs7121535	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	11p11.2		rs7121535-T	0.436873747	5E-9				Illumina [7417619] (imputed)	N
923	chr11	44368891	44368892	rs10838267	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	11p11.2	NR	rs10838267-A	0.55	5E-8		1.0309278	[1.02-1.04]	Illumina [~ 10800000] (imputed)	N
923	chr11	44369476	44369477	rs3853291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs3853291-?	NR	4E-10				NR [~ 8900000] (imputed)	N
923	chr11	44369476	44369477	rs3853291	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p11.2	NR	rs3853291-A	0.5472	3E-7	(EA)	0.0318	[0.02-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
923	chr11	44370950	44370951	rs143653572	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	11p11.2	ALX4	rs143653572-T	NR	9E-7		0.39	[0.23-0.54] unit decrease	Affymetrix [9868623] (imputed)	N
923	chr11	44375451	44375452	rs117802187	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p11.2	NR	rs117802187-C	0.0424038	9E-14		0.057805	[0.043-0.073] unit increase	NR [19129689] (imputed)	N
923	chr11	44378009	44378010	rs10838269	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 30)	3,566 European ancestry individuals	4,680 European ancestry individuals	11p11.2		rs10838269-C	0.262478968	9E-15				Illumina [7417619] (imputed)	N
923	chr11	44378155	44378156	rs11037965	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p11.2	ALX4	rs11037965-T	0.07	3E-7	(MAP, response to intervention)	1.4	[0.87-1.93] mmHg decrease	Affymetrix [2216774] (imputed)	N
923	chr11	44378155	44378156	rs11037965	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	11p11.2	ALX4	rs11037965-T	0.07	2E-6	(DBP, response to intervention)	1.4	[0.83-1.97] mmHg decrease	Affymetrix [2216774] (imputed)	N
923	chr11	44388504	44388505	rs10769041	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p11.2	NR	rs10769041-T	0.210614	3E-27		0.0450689	[0.037-0.053] unit decrease	NR [19129689] (imputed)	N
923	chr11	44410861	44410862	rs11037975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11p11.2		rs11037975-?	NR	5E-61				NR [~ 8900000] (imputed)	N
923	chr11	44410861	44410862	rs11037975	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11p11.2	NR	rs11037975-G	0.300063	4E-39		0.0485667	[0.041-0.056] unit decrease	NR [19129689] (imputed)	N
923	chr11	44410861	44410862	rs11037975	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	11p11.2	ALX4	rs11037975-C	NR	2E-19		0.138017	[0.11-0.17] unit decrease	Affymetrix [27512692] (imputed)	N
923	chr11	44410861	44410862	rs11037975	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	11p11.2		rs11037975-G	0.3	9E-14		0.17	[0.13-0.21] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
923	chr11	44410861	44410862	rs11037975	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		11p11.2	NR	rs11037975-G	NR	8E-20		0.06	NR unit decrease	NR [NR] (imputed)	N
923	chr11	44410861	44410862	rs11037975	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	11p11.2	ALX4, CD82	rs11037975-?	NR	6E-10		1.1709602	[1.11-1.23]	Illumina [13436641] (imputed)	N
923	chr11	44431806	44431807	rs2863081	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		11p11.2	NR	rs2863081-A	NR	6E-20		0.0791024	NR unit increase	NR [NR] (imputed)	N
924	chr11	44476520	44476521	rs724411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p11.2		rs724411-?	NR	3E-15				NR [~ 8900000] (imputed)	N
924	chr11	44496551	44496552	rs357925	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11p11.2	CD82	rs357925-A	0.2254	3E-11		1.064	NR	Affymetrix [9154080] (imputed)	N
924	chr11	44522417	44522418	rs1560294	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	TNF-alpha gene expression levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	11p11.2	CD82	rs1560294-C	0.5	2E-8		1.501	[0.98-2.02] unit decrease	Illumina [10307610] (imputed)	N
925	chr11	44579871	44579872	rs55953134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs55953134-G	0.56017	1E-51				Affymetrix, Illumina [22063850] (imputed)	N
925	chr11	44580580	44580581	rs77796218	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	11p11.2	CD82	rs77796218-C	0.97	3E-6	(female)	0.49	[0.29-0.69] unit increase	Illumina [7411206] (imputed)	N
925	chr11	44580740	44580741	rs9943566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p11.2		rs9943566-C	0.499132	5E-17		0.018913034	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
925	chr11	44585932	44585933	rs934178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p11.2	CD82	rs934178-C	0.48765	3E-13		0.02005861	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44585932	44585933	rs934178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p11.2	NR	rs934178-T	0.509574	6E-54		0.02934	[0.026-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
925	chr11	44585932	44585933	rs934178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p11.2		rs934178-?	NR	2E-46				NR [~ 8900000] (imputed)	N
925	chr11	44594170	44594172	rs113104107	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11p11.2	CD82	rs113104107-C	NR	6E-17		0.038458	[0.029-0.047] unit decrease	Affymetrix [16832071] (imputed)	N
925	chr11	44594610	44594611	rs60865046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11p11.2	CD82	rs60865046-A	0.2896	1E-21		0.03729514	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
925	chr11	44595965	44595966	rs10160292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p11.2	CD82	rs10160292-G	0.252241	3E-10		0.01988107	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44598234	44598235	rs7123132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p11.2		rs7123132-G	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
925	chr11	44598435	44598436	rs11038065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p11.2	CD82	rs11038065-G	0.773963	1E-12		0.019240925	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
925	chr11	44598436	44598437	rs11605647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p11.2	CD82	rs11605647-A	0.522595	3E-15		0.017748566	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44598436	44598437	rs11605647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p11.2	CD82	rs11605647-A	0.522609	5E-14		0.016933175	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44598436	44598437	rs11605647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p11.2	CD82	rs11605647-A	0.522714	2E-20		0.0206806	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44598436	44598437	rs11605647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p11.2	CD82	rs11605647-A	0.522725	3E-19		0.020055046	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44603327	44603328	rs730129	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	11p11.2	CD82	rs730129-T	0.30	7E-6	(AT levels)	2.55	[1.43-3.67] iu/ml decrease	Illumina [472123]	N
925	chr11	44607331	44607332	rs1981992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p11.2		rs1981992-G	NR	1E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
925	chr11	44612713	44612714	rs934177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p11.2	CD82	rs934177-G	0.438262	1E-9		0.013604012	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr11	44612713	44612714	rs934177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs934177-G	0.480098	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
925	chr11	44612713	44612714	rs934177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p11.2	NR	rs934177-G	0.436836	3E-13		0.014203	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
925	chr11	44612809	44612810	rs113316507	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11p11.2	NR	rs113316507-?	NR	2E-8				Illumina [7760689] (imputed)	N
925	chr11	44626460	44626461	rs4755851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs4755851-?		3E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
925	chr11	44626460	44626461	rs4755851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs4755851-?		2E-8	(Hippocampus )			NR [8955960] (imputed)	N
925	chr11	44626460	44626461	rs4755851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs4755851-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		7E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		5E-16	(Cingulate gyrus)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		4E-10	(External capsule )			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		3E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		2E-10	(Average across all tracts)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		1E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		4E-12	(External capsule )			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		3E-13	(Average across all tracts)			NR [8955960] (imputed)	N
925	chr11	44636546	44636547	rs7935166	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs7935166-?		1E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
925	chr11	44636832	44636833	rs2303865	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs2303865-?		2E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
925	chr11	44636832	44636833	rs2303865	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs2303865-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
925	chr11	44636832	44636833	rs2303865	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	11p11.2	NR	rs2303865-?		1E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
925	chr11	44659515	44659517	rs745770348	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	11p11.2	CD82, TSPAN18, ALX4	rs745770348-A	0.16	3E-7		0.27	[0.17-0.37] unit decrease	Illumina [10000000] (imputed)	N
926	chr11	44737037	44737038	rs148894407	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11p11.2	TSPAN18	rs148894407-G	0.0118028335402329	1E-6	(G_Sutterella_RNT)	0.756111	[0.45-1.06] unit decrease	Illumina [7711310] (imputed)	N
926	chr11	44762754	44762755	rs74472562	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	11p11.2	RP11- 45A12.2, TSPAN18	rs74472562-T	0.086	6E-8	(Hispanic)	0.035	[0.023-0.047] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
927	chr11	44843133	44843134	rs11038167	22037552	Yue WH	2011-10-30	Nat Genet	Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.	Schizophrenia	746 Han Chinese ancestry cases, 1,599 Han Chinese ancestry controls	4,027 Han Chinese ancestry cases, 5,603 Han Chinese ancestry controls	11p11.2	TSPAN18	rs11038167-?	NR	1E-11		1.29	[1.23-1.36]	Illumina [493203]	N
927	chr11	44851821	44851822	rs11601331	30941828	Bi X	2019-04-03	Genet Epidemiol	Common genetic variants have associations with human cortical brain regions and risk of schizophrenia.	Cortical brain region measurements (area, volume and thickness)	901 children and adolescents	812 children and adolescents	11p11.2		rs11601331-T	0.054	1E-8	(right rostral middle frontal (area))	274.13	[179.74-368.52] mm2 increase	Affymetrix, Illumina [260781]	N
927	chr11	44855662	44855663	rs9666712	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p11.2	TSPAN18	rs9666712-G	0.904	3E-8		0.118	[0.077-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
927	chr11	44869925	44869926	rs74882993	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.2	TSPAN18	rs74882993-C	0.78708	3E-12	(1-stearoyl-2-arachidonoyl-GPC (18:0/20:4))	0.211	[0.15-0.27] unit increase	Illumina [13039987] (imputed)	N
927	chr11	44950702	44950703	rs138778813	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p11.2		rs138778813-G	0.01	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
928	chr11	44976680	44976681	rs11038225	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p11.2	PRDM11	rs11038225-G	0.90971	2E-6		0.4333	[0.26-0.61] unit decrease	Affymetrix [8590397] (imputed)	N
928	chr11	44980382	44980383	rs12576326	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	11p11.2	TP53I11	rs12576326-A	0.657499	7E-6		0.303018	[0.17-0.44] unit decrease	Affymetrix [~ 7800000] (imputed)	N
928	chr11	44980382	44980383	rs12576326	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	11p11.2	TP53I11	rs12576326-G	0.34	1E-12		0.2528	[0.18-0.32] unit increase	Affymetrix [19941912] (imputed)	N
928	chr11	45001489	45001490	rs12791968	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	11p11.2	intergenic	rs12791968-C	0.281	4E-6				Illumina [4873750] (imputed)	N
928	chr11	45005680	45005681	rs148772934	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p11.2	TSPAN18, PRDM11, SYT13	rs148772934-?	NR	1E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
928	chr11	45005680	45005681	rs148772934	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11p11.2	TSPAN18, PRDM11, SYT13	rs148772934-T	0.9859	1E-8	(African)	11.66	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
928	chr11	45059130	45059131	rs144572046	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11p11.2	Intergenic	rs144572046-T	0.978	4E-6	(AA)	0.054	unit increase	Illumina [NR] (imputed)	N
928	chr11	45060670	45060671	rs1484399	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	PRDM11	rs1484399-?	NR	2E-9		0.010408	[0.007-0.0138] unit increase	Affymetrix [805426] (imputed)	N
928	chr11	45062338	45062339	rs7125249	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 1 electroencephalogram power	191 European ancestry individuals	NA	11p11.2	NR	rs7125249-?	NR	4E-6		0.03	NR unit increase	Affymetrix [388620]	N
928	chr11	45068570	45068571	rs7937459	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	PRDM11	rs7937459-?	NR	1E-9		0.010596	[0.0072-0.014] unit increase	Affymetrix [805426] (imputed)	N
928	chr11	45073857	45073858	rs1351848	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	PRDM11	rs1351848-?	NR	9E-10		0.010752	[0.0073-0.0142] unit increase	Affymetrix [805426] (imputed)	N
928	chr11	45077297	45077298	rs60323060	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p11.2	NR	rs60323060-A	0.01045	5E-9	(SOD2)	2.748	NR unit increase	Illumina [1671387] (imputed)	N
928	chr11	45084530	45084531	rs7951911	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11p11.2	NR	rs7951911-G	0.0838039874720358	8E-6	(IGP59)	0.2689	[0.15-0.39] unit decrease	Illumina [~ 2500000] (imputed)	N
929	chr11	45122985	45122986	rs73464505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11p11.2		rs73464505-?	NR	4E-8				NR [~ 8900000] (imputed)	N
929	chr11	45123092	45123093	rs11604741	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	11p11.2	PRDM11	rs11604741-?	NR	9E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
929	chr11	45123797	45123798	rs34937552	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	PRDM11	rs34937552-?	NR	1E-9		0.010677	[0.0072-0.0141] unit decrease	Affymetrix [805426] (imputed)	N
929	chr11	45123930	45123931	rs73464507	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	11p11.2		rs73464507-?	NR	1E-9				NR [7857346] (imputed)	N
929	chr11	45123930	45123931	rs73464507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	PRDM11	rs73464507-?	NR	1E-9		0.010586	[0.0072-0.014] unit decrease	Affymetrix [805426] (imputed)	N
929	chr11	45140743	45140744	rs7122974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	PRDM11	rs7122974-G	NR	2E-8		0.0267819	[0.017-0.036] unit decrease	Affymetrix [321788] (imputed)	N
929	chr11	45173309	45173310	rs149424434	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	11p11.2	NR	rs149424434-?	NR	7E-7		0.5058	[0.31-0.71] unit increase	Illumina [at least 560000] (imputed)	N
929	chr11	45191856	45191857	rs11038339	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs11038339-?	NR	1E-9				NR [NR]	N
929	chr11	45191856	45191857	rs11038339	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs11038339-?	NR	3E-9				NR [NR]	N
929	chr11	45193778	45193779	rs10769123	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs10769123-?	NR	3E-9				NR [NR]	N
929	chr11	45193778	45193779	rs10769123	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs10769123-?	NR	3E-9				NR [NR]	N
929	chr11	45193778	45193779	rs10769123	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p11.2	NR	rs10769123-A	0.2624	2E-6		0.0194	[0.012-0.027] unit decrease	Illumina [NR] (imputed)	N
929	chr11	45193778	45193779	rs10769123	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11p11.2	NR	rs10769123-A	0.247	2E-7		0.02102448	[0.013-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
929	chr11	45194005	45194006	rs10838428	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs10838428-?	NR	6E-9				NR [NR]	N
929	chr11	45194266	45194267	rs76540505	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	11p11.2	NR	rs76540505-?	NR	5E-7		0.2719	[0.17-0.38] unit increase	Illumina [at least 560000] (imputed)	N
929	chr11	45198687	45198688	rs10742746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	PRDM11	rs10742746-T	NR	4E-12		0.0291118	[0.021-0.037] unit decrease	Affymetrix [321788] (imputed)	N
929	chr11	45206222	45206223	rs11300354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p11.2		rs11300354-T	NR	3E-12		0.0253	[0.018-0.032] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
929	chr11	45208141	45208141	rs11442819	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11p11.2	PRDM11	rs11442819-?	0.11	7E-9		0.279	[0.18-0.38] unit decrease	Affymetrix [~ 9800000] (imputed)	N
930	chr11	45226522	45226523	rs77489332	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11p11.2	PRDM11	rs77489332-A	0.01	7E-7	(African American)	1.63	[0.98-2.28] unit increase	Illumina [up to 13042663] (imputed)	N
930	chr11	45227566	45227567	rs17723470	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	11p11.2	PRDM11	rs17723470-T	0.279	9E-11	(TSH)	0.065	[0.045-0.085] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
930	chr11	45227566	45227567	rs17723470	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	11p11.2	PRDM11	rs17723470-T	0.279	3E-7	(TSH - Females)	0.069	[0.044-0.094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
930	chr11	45228685	45228686	rs12284404	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	11p11.2	PRDM11	rs12284404-A	0.29828003809915	3E-41		0.0679	[0.058-0.078] SD decrease	Illumina [22400000] (imputed)	N
930	chr11	45229090	45229091	rs2863166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11p11.2	PRDM11	rs2863166-G	NR	4E-8		0.0222382	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
930	chr11	45229090	45229091	rs2863166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11p11.2	PRDM11	rs2863166-G	NR	2E-8		0.022844	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
930	chr11	45233085	45233085	rs140843608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p11.2		rs140843608-GTGCGGTCAGATGCTCC	NR	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
930	chr11	45233472	45233473	rs10838433	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p11.2	PRDM11	rs10838433-G		2E-6		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
930	chr11	45233472	45233473	rs10838433	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.2	PRDM11	rs10838433-G		5E-12		0.195	unit decrease	Affymetrix [at least 2696785] (imputed)	N
930	chr11	45237857	45237858	rs11038357	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	11p11.2	PRDM11	rs11038357-A	0.28	3E-11		0.235	[0.17-0.3] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
930	chr11	45244902	45244903	rs10838435	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11p11.2	PRDM11	rs10838435-C	0.1439	7E-9		0.0192	[0.013-0.026] unit increase	Affymetrix [19819130] (imputed)	N
930	chr11	45244902	45244903	rs10838435	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11p11.2	PRDM11	rs10838435-C	0.1439	1E-10		0.0211	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
930	chr11	45246868	45246869	rs714215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p11.2		rs714215-G	NR	3E-14		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
930	chr11	45247175	45247176	rs714417	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11p11.2	PRDM11	rs714417-C	0.69	1E-11				NR [> 9500000] (imputed)	N
930	chr11	45250731	45250732	rs2863171	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	11p11.2	PRDM11	rs2863171-C	0.158	9E-10	(EA)	23.924	[16.27-31.58] ml increase	Affymetrix, Illumina [2762059] (imputed)	N
930	chr11	45251859	45251860	rs10769130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	CTD-2560E9.3	rs10769130-C	NR	2E-11		0.0215184	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
930	chr11	45251859	45251860	rs10769130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs10769130-?	NR	2E-16				NR [~ 8900000] (imputed)	N
930	chr11	45253865	45253866	rs4433560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	CTD-2560E9.3	rs4433560-A	NR	4E-11		0.0268094	[0.019-0.035] unit decrease	Affymetrix [321788] (imputed)	N
930	chr11	45255925	45255926	rs3740781	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	SYT13	rs3740781-T	0.6604	5E-10		0.2255	[0.15-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
930	chr11	45255925	45255926	rs3740781	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	SYT13	rs3740781-T	0.663	6E-15		0.2127	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
930	chr11	45260015	45260016	rs6485603	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	11p11.2	SYT13	rs6485603-G	0.5506	5E-6	(EA)			Illumina [NR] (imputed)	N
930	chr11	45323852	45323853	rs4073405	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	11p11.2	SYT13	rs4073405-?		1E-6		1.01	[0.96-1.04]	Illumina [at least 473583] (imputed)	N
930	chr11	45330220	45330221	rs11038391	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11p11.2	NR	rs11038391-?	NR	8E-9		1.0643846	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
930	chr11	45330685	45330686	rs6485612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	SYT13	rs6485612-A	NR	3E-8		0.0180958	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
930	chr11	45330685	45330686	rs6485612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs6485612-?	NR	5E-8				NR [~ 8900000] (imputed)	N
930	chr11	45350206	45350207	rs10838450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	RP11-430H10.1	rs10838450-C	NR	2E-8		0.024451	[0.016-0.033] unit decrease	Affymetrix [321788] (imputed)	N
931	chr11	45352780	45352781	rs6416134	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p11.2	SYT13	rs6416134-G	0.181176	5E-8		0.00973344	[0.0062-0.0132] unit decrease	Affymetrix [12370749]	N
931	chr11	45358555	45358557	rs141886405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11p11.2		rs141886405-C	NR	2E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
931	chr11	45360317	45360318	rs145692133	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	11p11.2	NR	rs145692133-G		6E-6		0.2037	[0.11-0.29] SD units increase	NR [10700000] (imputed)	N
931	chr11	45379773	45379774	rs10838455	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p11.2	SYT13	rs10838455-T	0.929	2E-9		0.147	[0.098-0.196] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr11	45391350	45391351	rs12365508	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p11.2	NR	rs12365508-?		3E-6				Illumina [4322238] (imputed)	N
931	chr11	45404317	45404318	rs11038428	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p11.2	NA	rs11038428-T	0.2807	2E-13		0.0133	[0.0098-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
931	chr11	45405178	45405179	rs78269470	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low gait speed	37 Taiwanese ancestry cases, 59 Taiwanese ancestry controls	NA	11p11.2		rs78269470-?	0.06771	2E-6		3.96		Affymetrix [NR]	N
931	chr11	45415576	45415577	rs72899452	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11p11.2	NR	rs72899452-T	0.0648	1E-9		1.077	[1.05-1.1]	Affymetrix, Illumina [NR] (imputed)	N
931	chr11	45420232	45420233	rs34042421	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs34042421-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
931	chr11	45420232	45420233	rs34042421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs34042421-?	NR	2E-11				NR [~ 8900000] (imputed)	N
931	chr11	45438373	45438374	rs10742752	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs10742752-C	NR	6E-16		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
931	chr11	45438373	45438374	rs10742752	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	SYT13	rs10742752-C	0.616	7E-6		0.014	[0.0076-0.0194] kg/m2 increase	Affymetrix, Illumina [2550021]	N
931	chr11	45438373	45438374	rs10742752	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	SYT13	rs10742752-C	0.612	7E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
931	chr11	45444853	45444853	rs750852209	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs750852209-AG	0.511806	6E-15		0.0715995	[0.054-0.09] decrease	Affymetrix [11014269] (imputed)	N
931	chr11	45446723	45446724	rs7943688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p11.2		rs7943688-?	NR	7E-10				NR [~ 8900000] (imputed)	N
931	chr11	45453211	45453212	rs1868912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11p11.2	Intergenic	rs1868912-A	0.7723	4E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
932	chr11	45522617	45522618	rs74605438	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p11.2	AC103855.3	rs74605438-C	0.98705	7E-12		1.194	[0.85-1.54] unit decrease	Affymetrix [8590397] (imputed)	N
932	chr11	45528115	45528116	rs1488665	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11p11.2	FLJ41423	rs1488665-A	0.105	5E-6	(Urinary free norepinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
932	chr11	45538919	45538920	rs141208451	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urate levels	2077 British ancestry individuals from 6863 families.	NA	11p11.2	RP11-430H10.4	rs141208451-A	0.0053	3E-9				Illumina [24111857] (imputed)	N
932	chr11	45550752	45550753	rs74360883	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11p11.2	NR	rs74360883-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
932	chr11	45588397	45588399	rs10577852	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	11p11.2	CHST1	rs10577852-?	NR	4E-9	(Non Europeans, BMI adjusted)	0.226	[0.14-0.3] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
932	chr11	45588397	45588399	rs10577852	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	11p11.2	CHST1	rs10577852-?	0.44	4E-9	(Non Europeans, adjusted for BMI)	0.226	[0.15-0.3] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
932	chr11	45603026	45603027	rs7126460	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	11p11.2	LARGE2, PHF21A	rs7126460-A	0.449412	9E-6		0.837	[0.773 - 0.906]	Illumina [5397657] (imputed)	N
933	chr11	45673013	45673014	rs4148900	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4148900-A	0.655026	4E-8		0.050126	[0.031-0.069] decrease	Affymetrix [11014269] (imputed)	N
933	chr11	45687365	45687366	rs55681357	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p11.2	CHST1, MAPK8IP1, GYLTL1B, PHF21A	rs55681357-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
933	chr11	45688594	45688595	rs10769159	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcus1 id.11373)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	11p11.2		rs10769159-G	NR	5E-9		5.837743	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr11	45693802	45693803	rs4755334	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p11.2	CHST1	rs4755334-A	0.82796875	3E-8	(CHST1, 7803_4_3)	0.18438114	[0.12-0.25] unit increase	Illumina [> 1000000] (imputed)	N
933	chr11	45693983	45693984	rs10742763	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	11p11.2	NR	rs10742763-T	0.063043	4E-6		1.31	[1.17-1.46]	Illumina [8992756] (imputed)	N
933	chr11	45696152	45696153	rs9787901	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	11p11.2		rs9787901-G	0.418	6E-6		0.87	[0.83-0.93]	Illumina [7199488] (imputed)	N
933	chr11	45711029	45711030	rs2666895	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	11p11.2	CHST1, MIR7154	rs2666895-?	0.092	4E-7		1.992032	[1.87-2.11]	NR [~ 2000000] (imputed)	N
934	chr11	45744697	45744698	rs10742765	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	NR	rs10742765-?	NR	4E-6		4.605	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
934	chr11	45751080	45751081	rs2084346	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	11p11.2		rs2084346-?	NR	2E-6		0.2957	unit decrease	Illumina [11927194] (imputed)	N
934	chr11	45774996	45774997	rs12365302	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	11p11.2	SLC35C1, CHST1	rs12365302-?	NR	4E-7	(Post-puberty)	0.139	[0.086-0.192] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
934	chr11	45813580	45813581	rs12285276	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11p11.2	SLC35C1, CRY2	rs12285276-G	0.76	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
934	chr11	45839888	45839889	rs12805422	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting glucose levels (pleiotropy)	54,162 European ancestry cases, 58,047 European ancestry individuals	NA	11p11.2	C11orf94, CRY2, MAPK8IP1, PEX16	rs12805422-?		2E-13				NR [NR]	N
934	chr11	45846497	45846498	rs11038672	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11p11.2	NR	rs11038672-G	0.5238	1E-10		0.0294	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
934	chr11	45858583	45858584	rs12419690	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p11.2	NR	rs12419690-G	0.5115	1E-13		0.0298	[0.022-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
934	chr11	45870176	45870177	rs10838524	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p11.2	CRY2	rs10838524-A	0.4542	2E-40		0.0238	[0.021-0.027] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
934	chr11	45873090	45873091	rs11605924	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	11p11.2	CRY2	rs11605924-A	0.489367	8E-10		0.018715	[0.013-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
934	chr11	45873090	45873091	rs11605924	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	11p11.2	CRY2	rs11605924-A	0.489367	5E-16		0.02664	[0.02-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
934	chr11	45873090	45873091	rs11605924	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	11p11.2	CRY2	rs11605924-A	0.489367	1E-26		0.022972	[0.019-0.027] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
934	chr11	45873090	45873091	rs11605924	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	11p11.2	CRY2	rs11605924-?	NR	4E-10				NR [NR]	N
934	chr11	45873090	45873091	rs11605924	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	CRY2	rs11605924-A	0.4858	4E-15		3.0E-4	[-0.00102-0.00162] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
934	chr11	45873090	45873091	rs11605924	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	CRY2	rs11605924-A	0.489	3E-13		0.0223	[0.016-0.028] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
934	chr11	45873090	45873091	rs11605924	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	11p11.2	CRY2	rs11605924-A	0.49	1E-14		0.015	[0.0091-0.0209] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
934	chr11	45875160	45875161	rs77756595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs77756595-G	NR	8E-10		0.04	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr11	45875160	45875161	rs77756595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs77756595-G	NR	4E-13		0.0492	[0.036-0.063] unit increase	Affymetrix [9000000] (imputed)	N
934	chr11	45875160	45875161	rs77756595	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.2	CRY2	rs77756595-A	0.964535	3E-10		0.0337082	[0.023-0.044] unit increase	Affymetrix [NR] (imputed)	N
935	chr11	45889774	45889775	rs12364060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11p11.2	NR	rs12364060-T	0.23723399999999994	2E-8		0.00755351	[0.0049-0.0102] unit increase	Affymetrix [16582621] (imputed)	N
935	chr11	45889774	45889775	rs12364060	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11p11.2	NR	rs12364060-T	0.23723399999999994	2E-7		0.00787755	[0.005-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
935	chr11	45903612	45903613	rs2292910	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p11.2	NR	rs2292910-A	0.331548	1E-11		0.00572771	[0.004-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
935	chr11	45903612	45903613	rs2292910	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p11.2	NR	rs2292910-A	0.331548	3E-9		0.00567379	[0.0037-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
935	chr11	45912012	45912013	rs7115753	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	11p11.2	MAPK8IP1	rs7115753-A	0.7318	7E-10		0.0271	[0.018-0.037] unit increase	Affymetrix, Illumina [15438438] (imputed)	N
935	chr11	45912012	45912013	rs7115753	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p11.2	CRY2	rs7115753-A	0.4494	4E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
935	chr11	45913606	45913607	rs77403571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p11.2	NR	rs77403571-A	0.062667	3E-10		0.02554	[0.018-0.033] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
935	chr11	45913606	45913607	rs77403571	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	MAPK8IP1	rs77403571-G	0.937382	1E-23		0.0400385	[0.032-0.048] unit decrease	Affymetrix [NR] (imputed)	N
935	chr11	45913606	45913607	rs77403571	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs77403571-G	NR	3E-9		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
935	chr11	45913993	45913994	rs78014668	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	11p11.2	NR	rs78014668-C	0.0818	5E-7		1.15189		NR [9372253] (imputed)	N
935	chr11	45915430	45915431	rs76494389	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p11.2	NR	rs76494389-C	0.01045	6E-9	(FERMT2)	0.08258	NR unit increase	Illumina [1671387] (imputed)	N
935	chr11	45934696	45934697	rs4505038	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	11p11.2	PEX16	rs4505038-?	NR	8E-13		7.25	NR	Illumina [802276]	N
935	chr11	45944186	45944186	rs139857392	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11p11.2		rs139857392-TCGGGGG	0.010056	9E-6		0.15132	[0.084-0.218] unit decrease	Affymetrix [15580782] (imputed)	N
935	chr11	45947463	45947464	rs10838532	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	11p11.2	PHF21A, PEX16, MAPK8IP1, LOC143678, SLC35C1, GYLTL1B, CRY2	rs10838532-C	0.248	2E-6		0.0603	[0.035-0.085] unit increase	Illumina [2500000] (imputed)	N
935	chr11	45949533	45949534	rs939105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs939105-?	NR	4E-16				NR [~ 8900000] (imputed)	N
935	chr11	45952310	45952311	rs2863714	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p11.2	NR	rs2863714-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
935	chr11	45958443	45958444	rs11038716	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p11.2		rs11038716-G	0.787	2E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
935	chr11	45961113	45961114	rs4756044	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	11p11.2	NR	rs4756044-A	0.7475	4E-8		1.0320983	NR	NR [8968716] (imputed)	N
935	chr11	45975129	45975130	rs3736508	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.2	PHF21A	rs3736508-C	0.767448	7E-11	(1-arachidonoyl-GPC (20:4n6)*)	0.188	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
935	chr11	45975129	45975130	rs3736508	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p11.2	PHF21A	rs3736508-C	0.767448	7E-11	(1-arachidonoyl-GPC (20:4n6)*)	0.188	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
935	chr11	45984067	45984068	rs140876547	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs140876547-?	NR	9E-10		0.5644	[0.38-0.74] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
935	chr11	45992145	45992145	rs397722590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p11.2		rs397722590-AT	NR	2E-8		0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
935	chr11	46001228	46001229	rs2946005	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	11p11.2	NR	rs2946005-G	NR	3E-9	(EA)	0.08	NR unit decrease	Affymetrix [723305]	N
935	chr11	46001228	46001229	rs2946005	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	11p11.2	NR	rs2946005-G	NR	2E-6				Affymetrix [723305]	N
936	chr11	46015137	46015138	rs2959100	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p11.2		rs2959100-G	0.44	1E-15		8.02	z score increase	Affymetrix [9061022] (imputed)	N
936	chr11	46020908	46020909	rs79686965	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs79686965-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
936	chr11	46020908	46020909	rs79686965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs79686965-?	NR	2E-11				NR [~ 8900000] (imputed)	N
936	chr11	46029048	46029049	rs140273453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p11.2	Intergenic	rs140273453-C	0.0824	1E-9	(MTAG)	0.0183	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
936	chr11	46033087	46033088	rs61882513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p11.2	PHF21A	rs61882513-C	NR	2E-8		0.0298564	[0.019-0.04] unit decrease	Affymetrix [321114] (imputed)	N
936	chr11	46035465	46035466	rs4237660	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p11.2	NR	rs4237660-C	0.3399	2E-8				NR [9056863] (imputed)	N
936	chr11	46048383	46048384	rs56852527	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11p11.2	PHF21A	rs56852527-T	0.198	4E-8		0.013414376	[0.0086-0.0182] unit decrease	Illumina [9339358] (imputed)	N
936	chr11	46052574	46052575	rs16938437	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	11p11.2	NR	rs16938437-T	NR	3E-9	(EA)	0.08	NR unit decrease	Affymetrix [723305]	N
936	chr11	46052574	46052575	rs16938437	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	11p11.2	NR	rs16938437-T	NR	2E-7				Affymetrix [723305]	N
936	chr11	46052574	46052575	rs16938437	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	11p11.2	PHF21A	rs16938437-T	0.09	6E-8		3.7	[2.33-5.07] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46058239	46058240	rs11038747	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs11038747-?	NR	2E-7		0.0427	[0.027-0.059] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46062244	46062245	rs79728014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs79728014-?	NR	2E-34				NR [~ 8900000] (imputed)	N
936	chr11	46062244	46062245	rs79728014	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11p11.2		rs79728014-A	0.8553	2E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
936	chr11	46063033	46063034	rs11038750	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs11038750-?	NR	3E-6		0.0341	[0.02-0.048] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46070177	46070178	rs2932513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs2932513-?	NR	2E-8				NR [~ 8900000] (imputed)	N
936	chr11	46070934	46070935	rs61882549	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	NR	rs61882549-?	NR	5E-7		0.0085934	[0.0052-0.0119] unit increase	Affymetrix [805426] (imputed)	N
936	chr11	46071252	46071253	rs4073513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p11.2		rs4073513-?	NR	1E-11				NR [~ 8900000] (imputed)	N
936	chr11	46078655	46078656	rs2959084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p11.2	NR	rs2959084-A	0.705	8E-7		0.00582215	[0.0035-0.0081] unit increase	NR [9732723] (imputed)	N
936	chr11	46078655	46078656	rs2959084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p11.2	NR	rs2959084-A	0.704674	1E-9	(Conditioned on chr11:46393574)	0.017079866	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
936	chr11	46078700	46078701	rs11038755	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs11038755-?	NR	1E-7		0.0422	[0.027-0.058] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46079057	46079058	rs11038756	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs11038756-?	NR	2E-7		0.0423	[0.026-0.058] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46084676	46084677	rs80171383	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11p11.2	PHF21A	rs80171383-A	0.147183284845279	2E-16		0.014170276	unit increase	NR [9276018] (imputed)	N
936	chr11	46093734	46093735	rs146033545	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs146033545-?	NR	9E-10		0.5692	[0.39-0.75] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
936	chr11	46097594	46097595	rs34225581	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p11.2	PHF21A	rs34225581-A	0.93204	9E-10		0.5472	[0.37-0.72] unit decrease	Affymetrix [8590397] (imputed)	N
936	chr11	46108441	46108442	rs1490088	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs1490088-?	NR	1E-7		0.0401	[0.025-0.055] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46113232	46113233	rs12363382	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs12363382-?	NR	4E-7		0.0391	[0.024-0.054] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
936	chr11	46119751	46119752	rs11038764	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	11p11.2	NR	rs11038764-?	NR	7E-7		0.0544	[0.033-0.076] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
937	chr11	46139679	46139683	rs537243094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p11.2		rs537243094-A	NR	8E-9		0.0643	[0.042-0.086] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
937	chr11	46141421	46141422	rs148683230	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p11.2	PHF21A	rs148683230-A	0.149	4E-12		0.0185	[0.013-0.024] unit increase	Affymetrix [18391927] (imputed)	N
937	chr11	46141421	46141422	rs148683230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11p11.2	Intergenic	rs148683230-A	0.1416	9E-13	(MTAG)	0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
937	chr11	46141510	46141511	rs555754158	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p11.2	PHF21A	rs555754158-G	0.987473	7E-9		0.0387031	[0.026-0.052] unit decrease	Affymetrix [12370749]	N
937	chr11	46145880	46145881	rs1125082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.2		rs1125082-?	NR	4E-8				NR [~ 8900000] (imputed)	N
937	chr11	46146854	46146855	rs10769187	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p11.2	PHF21A	rs10769187-A	0.8946	1E-8	(AA)	0.1217	[0.08-0.163] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
937	chr11	46150618	46150619	rs4756059	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p11.2	NA	rs4756059-T		1E-9		0.0207214	[0.014-0.027] unit increase	Illumina [13288253] (imputed)	N
937	chr11	46150618	46150619	rs4756059	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11p11.2	PHF21A	rs4756059-T	0.92	5E-13		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
937	chr11	46151489	46151490	rs10769190	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11p11.2	NR	rs10769190-T	0.2144	2E-6		0.0193	[0.011-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
937	chr11	46167595	46167596	rs77101145	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.2	NR	rs77101145-T	0.82419	2E-10		0.0173714	[0.012-0.023] unit increase	NR [NR]	N
937	chr11	46172861	46172862	rs77032217	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.2	PHF21A, CREB3L1	rs77032217-C	0.816718	3E-14	(1-stearoyl-2-arachidonoyl-GPC (18:0/20:4))	0.232	[0.17-0.29] unit increase	Illumina [13039987] (imputed)	N
937	chr11	46174412	46174413	rs57665059	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.2	PHF21A, CREB3L1	rs57665059-A	0.819915	2E-13	(1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4n6))	0.232	[0.17-0.29] unit increase	Illumina [13039987] (imputed)	N
937	chr11	46195219	46195220	rs80078546	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.2	PHF21A	rs80078546-C	0.945855	1E-8		0.0249409	[0.016-0.034] unit increase	Affymetrix [NR] (imputed)	N
937	chr11	46228648	46228649	rs1565411	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p11.2	NR	rs1565411-G	NR	9E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
937	chr11	46231009	46231010	rs75817747	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	CREB3L1	rs75817747-C	0.971092	2E-12		0.0404601	[0.029-0.052] unit decrease	Affymetrix [NR] (imputed)	N
937	chr11	46231955	46231956	rs55702830	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11p11.2	NR	rs55702830-?		1E-8				NR [520857]	N
937	chr11	46231955	46231956	rs55702830	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	C11orf49	rs55702830-A	0.394391	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
937	chr11	46231997	46231998	rs12283653	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs12283653-A	NR	1E-8		5.697	z score decrease	Affymetrix [10847151] (imputed)	N
937	chr11	46232816	46232817	rs141680974	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11p11.2	Intergenic	rs141680974-A	0.992	3E-6	(AA)	0.188	NR unit increase	Illumina [NR] (imputed)	N
937	chr11	46240909	46240910	rs141053791	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11p11.2	Intergenic	rs141053791-A	0.991	2E-6	(AA)	0.191	NR unit increase	Illumina [NR] (imputed)	N
937	chr11	46241756	46241757	rs61884130	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	NR	rs61884130-?	NR	8E-7		0.0084332	[0.0051-0.0118] unit increase	Affymetrix [805426] (imputed)	N
937	chr11	46242002	46242003	rs77662718	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs77662718-?	NR	2E-7		0.0918	[0.057-0.127] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
937	chr11	46243539	46243540	rs190588926	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11p11.2	Intergenic	rs190588926-T	0.99	2E-6	(AA)	0.185	NR unit increase	Illumina [NR] (imputed)	N
937	chr11	46253212	46253213	rs191962835	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11p11.2	Intergenic	rs191962835-T	0.992	3E-6	(AA)	0.197	NR unit increase	Illumina [NR] (imputed)	N
937	chr11	46260222	46260223	rs7113478	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p11.2	CTD-2589M5.5	rs7113478-A	0.373423	3E-8		0.03519283	[0.023-0.048] unit increase	Affymetrix [7288503] (imputed)	N
938	chr11	46297630	46297631	rs10437653	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11p11.2	CREB3L1	rs10437653-A	0.50026	4E-9		0.017483	[0.012-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
938	chr11	46300721	46300722	rs12280680	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	CREB3L1	rs12280680-A	0.5441	2E-7		0.0131	[0.0082-0.018] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
938	chr11	46301254	46301255	rs73461870	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p11.2	CREB3L1	rs73461870-A	0.8911	3E-8		0.0249	[0.016-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
938	chr11	46315578	46315579	rs140887381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs140887381-?	NR	2E-8				NR [~ 8900000] (imputed)	N
938	chr11	46320021	46320022	rs7943699	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.2	CREB3L1	rs7943699-G	0.515256	5E-15		0.0154633	[0.012-0.019] unit increase	Affymetrix [NR] (imputed)	N
938	chr11	46323208	46323209	rs7927724	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs7927724-A	NR	4E-8		0.01416	[0.0091-0.0192] unit increase	Affymetrix [10847151] (imputed)	N
938	chr11	46327567	46327568	rs111942477	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11p11.2	Intergenic	rs111942477-A	0.2894	4E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
938	chr11	46327577	46327578	rs117837188	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11p11.2	NR	rs117837188-A	0.0572	5E-8		0.0175441	[0.011-0.024] unit decrease	NR [9732723] (imputed)	N
938	chr11	46331361	46331362	rs72910057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p11.2		rs72910057-T	NR	3E-8		0.069	[0.045-0.093] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
938	chr11	46331361	46331362	rs72910057	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p11.2	CREB3L1	rs72910057-T	0.11283	3E-8		0.068998106	[0.045-0.093] unit increase	Affymetrix [7288503] (imputed)	N
938	chr11	46342833	46342834	rs7476	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	11p11.2		rs7476-C	0.69	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
938	chr11	46342833	46342834	rs7476	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	11p11.2	CREB3L1	rs7476-C	0.3763	8E-10		1.06	[1.04-1.08]	Affymetrix [at least 20323458] (imputed)	N
938	chr11	46342941	46342942	rs1044796	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11p11.2	NR	rs1044796-T	0.1913	8E-9		0.01542923	[0.01-0.021] unit increase	Affymetrix [10613246] (imputed)	N
938	chr11	46342941	46342942	rs1044796	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11p11.2	NR	rs1044796-T	0.197	5E-9		0.013272876	[0.0088-0.0177] unit increase	Affymetrix [NR] (imputed)	N
938	chr11	46345133	46345134	rs72910063	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	CREB3L1	rs72910063-T	0.1181	4E-13		0.314	[0.23-0.4] mmHg increase	Affymetrix [NR] (imputed)	N
938	chr11	46345834	46345835	rs140742326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p11.2		rs140742326-T	NR	6E-10		0.0201	[0.014-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
938	chr11	46348662	46348663	rs58385891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p11.2		rs58385891-A	NR	1E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
938	chr11	46349695	46349696	rs149903077	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Phlebitis and thrombophlebitis of lower extremities (PheCode 451.2)	2,996 European ancestry cases, 453,352 European ancestry controls	NA	11p11.2		rs149903077-T	0.009654	2E-12		1.05	[0.76-1.34] unit increase	NR [11842647] (imputed)	N
938	chr11	46349695	46349696	rs149903077	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs149903077-?	NR	2E-27		0.5993	[0.49-0.71] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
938	chr11	46349868	46349869	rs4565870	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	11p11.2	ATG13, AMBRA1	rs4565870-C	0.236	7E-10		1.38	[NR]	Illumina [up to 9464381] (imputed)	N
938	chr11	46355931	46355932	rs11038866	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	11p11.2	DGKZ	rs11038866-C	0.714173	9E-15		0.0267375	[0.02-0.033] unit increase	NR [16426330] (imputed)	N
938	chr11	46370766	46370767	rs876701	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11p11.2		rs876701-?	NR	4E-6		0.934541	[0.91-0.96]	NR [685523]	N
938	chr11	46373310	46373311	rs7951870	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7951870-?	NR	3E-9				NR [2625067]	N
938	chr11	46373310	46373311	rs7951870	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7951870-T	0.8241	2E-8		0.080768764	[0.052-0.109] unit decrease	NR [NR]	N
938	chr11	46373310	46373311	rs7951870	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA		DGKZ	rs7951870-T	0.829486	5E-10		0.0115536	[0.0079-0.0152] unit decrease	Affymetrix [12370749]	N
938	chr11	46373310	46373311	rs7951870	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs7951870-?	NR	9E-11				Illumina [up to 5582932] (imputed)	N
938	chr11	46373310	46373311	rs7951870	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		AMBRA1, ARHGAP1, ATG13, CHRM4, CKAP5, CREB3L1, DGKZ, F2, HARBI1, MDK, MIR3160-1, MIR3160-2, MIR4688, ZNF408	rs7951870-?	NR	3E-13		1.0976949	[1.07-1.12]	Illumina [8000000] (imputed)	N
938	chr11	46373310	46373311	rs7951870	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs7951870-C	NR	4E-11		1.098901	[NR]	Illumina [7158791] (imputed)	N
938	chr11	46376383	46376384	rs75212415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs75212415-C	NR	9E-11		0.0388	[0.027-0.051] unit increase	Affymetrix [9000000] (imputed)	N
938	chr11	46376383	46376384	rs75212415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs75212415-C	NR	9E-17		0.0518	[0.04-0.064] unit increase	Affymetrix [9000000] (imputed)	N
938	chr11	46376383	46376384	rs75212415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs75212415-C	NR	3E-9		0.0371	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
938	chr11	46377769	46377770	rs12577142	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	11p11.2		rs12577142-?	NR	7E-9		0.0191	NR unit increase	NR [4425810] (imputed)	N
938	chr11	46379441	46379442	rs11038871	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	11p11.2	DGKZ, MDK, AMBRA1, HARBI1, ATG13, F2, CKAP5	rs11038871-C	0.248	2E-6		1.36	[1.19-1.55]	Illumina [2057134] (imputed)	N
938	chr11	46392824	46392825	rs10838601	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11p11.2	NR	rs10838601-G	0.316	3E-8		0.00922754	[0.006-0.0125] unit increase	NR [9732723] (imputed)	N
938	chr11	46393573	46393574	rs3740977	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11p11.2	NR	rs3740977-C	0.167	1E-8		0.019473972	[0.013-0.026] unit increase	NR [~ 10000000] (imputed)	N
938	chr11	46393957	46393958	rs7936413	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	11p11.2		rs7936413-?	NR	3E-9				NR [7857346] (imputed)	N
938	chr11	46393957	46393958	rs7936413	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	DGKZ	rs7936413-?	NR	2E-9		0.010629	[0.0072-0.0141] unit increase	Affymetrix [805426] (imputed)	N
938	chr11	46398915	46398916	rs34406563	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs34406563-T	0.8148	7E-11	(European)	0.0533	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
938	chr11	46398915	46398916	rs34406563	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs34406563-T	0.7978	1E-13		0.0541	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
939	chr11	46402851	46402852	rs35324223	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p11.2	NR	rs35324223-G	0.171	2E-12		0.0100537	[0.0072-0.0129] unit increase	NR [9732723] (imputed)	N
939	chr11	46402851	46402852	rs35324223	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11p11.2	MDK	rs35324223-G	NR	2E-10	(EA)	1.0964912	[1.07-1.12]	Illumina [6627481] (imputed)	N
939	chr11	46402851	46402852	rs35324223	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11p11.2	AMBRA1, ARHGAP1, ATG13, C11orf49, CHRM4, CKAP5, CREB3L1, DGKZ, F2, HARBI1, LRP4, LRP4-AS1, MDK, MIR3160-1, MIR3160-2, MIR4688, MIR5582, SNORD67, ZNF408	rs35324223-?		3E-13		1.098901	[1.08-1.12]	Affymetrix, Illumina [NR]	N
939	chr11	46446401	46446402	rs148500124	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	11p11.2	NR	rs148500124-G		8E-6		0.3228	[0.18-0.47] SD units decrease	NR [10700000] (imputed)	N
939	chr11	46513248	46513249	rs7112229	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs7112229-T	0.1637	2E-10	(European)	0.0537	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
939	chr11	46513742	46513743	rs142929136	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p11.2	AMBRA1	rs142929136-T	0.9867	1E-16		1.306	[1-1.61] unit decrease	Affymetrix [8590397] (imputed)	N
939	chr11	46520301	46520302	rs17197116	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11p11.2	NR	rs17197116-C	0.0835	2E-11		0.0266115	[0.019-0.034] unit increase	NR [9732723] (imputed)	N
940	chr11	46548093	46548094	rs7932866	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11p11.2	AMBRA1	rs7932866-A	0.8356	3E-7		0.0448	[0.028-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
940	chr11	46548753	46548754	rs61882743	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11p11.2	NR	rs61882743-?		1E-9				NR [8377093]	N
940	chr11	46548753	46548754	rs61882743	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11p11.2	NR	rs61882743-?		1E-9				NR [8377093]	N
940	chr11	46548753	46548754	rs61882743	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11p11.2	AMBRA1, HARBI1	rs61882743-?		1E-8				NR [6786993] (imputed)	N
940	chr11	46548753	46548754	rs61882743	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11p11.2	AMBRA1	rs61882743-G	NR	3E-10	(EA)	1.0944512	[1.07-1.12]	Illumina [6627481] (imputed)	N
940	chr11	46548753	46548754	rs61882743	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11p11.2	AMBRA1	rs61882743-G	NR	2E-11		1.0928961	[1.07-1.12]	Illumina [6627481] (imputed)	N
940	chr11	46548753	46548754	rs61882743	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11p11.2	AMBRA1, CHRM4, DGKZ, MDK	rs61882743-G	NR	7E-12		1.0940919	[1.07-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
940	chr11	46555221	46555222	rs147283716	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs147283716-?	NR	2E-27		0.5033	[0.41-0.59] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
940	chr11	46559729	46559730	rs11038913	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	11p11.2	AMBRA1	rs11038913-?	NR	2E-17				NR [3144808] (imputed)	N
940	chr11	46599247	46599248	rs11038927	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11p11.2	AMBRA1	rs11038927-?	NR	8E-10		0.016444193	[0.011-0.022] unit decrease	NR [7306098]	N
940	chr11	46605281	46605282	rs149747817	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	11p11.2	NR	rs149747817-C	NR	7E-6		3.222	[1.93-5.38]	Illumina [13976150] (imputed)	N
940	chr11	46621033	46621034	rs780814398	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11p11.2	HARBI1	rs780814398-CA	0.738152	2E-10		0.0165664	[0.011-0.022] unit increase	NR [16516521] (imputed)	N
940	chr11	46632808	46632809	rs112282219	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11p11.2		rs112282219-G	0.959	4E-11		0.033	[0.023-0.043] unit decrease	Affymetrix [up to 90000000] (imputed)	N
940	chr11	46649718	46649719	rs113542381	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p11.2	ATG13	rs113542381-A	0.1461	2E-11		0.018	[0.013-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
940	chr11	46654403	46654404	rs61884271	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11p11.2		rs61884271-?	NR	3E-6		0.933977	[0.91-0.96]	NR [685523]	N
941	chr11	46676356	46676357	rs10769204	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	11p11.2	ATG13	rs10769204-T	0.7080839999999999	5E-9		0.0246136	[0.016-0.033] unit increase	Affymetrix [641018] (imputed)	N
941	chr11	46691604	46691605	rs139556855	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	11p11.2	NR	rs139556855-C		8E-6		0.3229	[0.18-0.47] SD units decrease	NR [10700000] (imputed)	N
941	chr11	46691736	46691737	rs4606447	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	ATG13	rs4606447-?	NR	7E-9		0.010443	[0.0069-0.014] unit decrease	Affymetrix [805426] (imputed)	N
941	chr11	46695482	46695483	rs56349329	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	11p11.2	ATG13	rs56349329-A	NR	4E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix [9304965] (imputed)	N
941	chr11	46697141	46697142	rs57744667	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11p11.2		rs57744667-T	0.16	5E-11		6.58	z score increase	Affymetrix [9061022] (imputed)	N
941	chr11	46699123	46699124	rs8914	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p11.2	ARHGAP1	rs8914-A	0.107	4E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
941	chr11	46702069	46702070	rs144801476	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARHGAP1	5,361 Icelandic ancestry individuals	NA	11p11.2		rs144801476-A	0.01043	1E-20		0.803561	[0.63-0.97] unit decrease	Illumina [7506463] (imputed)	N
941	chr11	46702690	46702691	rs4319473	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p11.2		rs4319473-A	0.1573	9E-9		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
941	chr11	46710870	46710871	rs187474069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11p11.2		rs187474069-C	NR	2E-24		56.0568	[45.28-66.83] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
941	chr11	46711777	46711778	rs10838613	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	ARHGAP1	rs10838613-?	NR	7E-9		0.010043	[0.0066-0.0134] unit decrease	Affymetrix [805426] (imputed)	N
941	chr11	46711853	46711854	rs7926389	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11p11.2	NR	rs7926389-?	NR	2E-12		1.0901321	[1.07-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
941	chr11	46720156	46720157	rs764166931	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs764166931-?	NR	4E-20		0.0514035	[0.04-0.063] unit increase	Affymetrix [20259828] (imputed)	N
941	chr11	46722220	46722221	rs7932354	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11p11.2	ARHGAP1	rs7932354-T	0.31	5E-18		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
941	chr11	46722220	46722221	rs7932354	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	11p11.2	ARHGAP1	rs7932354-T	0.29	4E-9		0.07	[0.05-0.09] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
941	chr11	46723936	46723937	rs12361673	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11p11.2	ZNF408	rs12361673-A	0.475188	5E-9		0.0446	[0.03-0.059] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
941	chr11	46728965	46728966	rs61337452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs61337452-C	0.140249	3E-18				Affymetrix, Illumina [23467995] (imputed)	N
941	chr11	46730521	46730522	rs11606709	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs11606709-A	0.3261	2E-12	(European)	0.049	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
941	chr11	46737411	46737412	rs113001570	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	11p11.2	NR	rs113001570-T	0.0667	1E-9		0.02980134	[0.02-0.039] unit increase	NR [~ 10000000] (imputed)	N
941	chr11	46741494	46741495	rs2070850	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	11p11.2	F2	rs2070850-?	NR	1E-9		0.04035	[0.027-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
941	chr11	46743246	46743247	rs3136441	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11p11.2		rs3136441-T	0.7654	3E-7		0.0081	[0.005-0.0112] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
941	chr11	46743246	46743247	rs3136441	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs3136441-T	NR	2E-8		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
941	chr11	46743246	46743247	rs3136441	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs3136441-T	0.878	6E-7	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
941	chr11	46743246	46743247	rs3136441	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11p11.2	LRP4	rs3136441-C	0.18	7E-29		0.054	[NR] unit increase	NR [NR] (imputed)	N
941	chr11	46743246	46743247	rs3136441	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11p11.2	LRP4, NR1H3	rs3136441-C	0.15	3E-18		0.78	[0.58-0.98] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
941	chr11	46744368	46744369	rs3136448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p11.2	F2	rs3136448-A	0.085724	6E-11		0.025915636	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
941	chr11	46744924	46744925	rs2070852	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Thumb osteoarthritis severity (hand Klsum)	2,071 Dutch ancestry individuals	1,203 individuals	11p11.2	F2	rs2070852-C	0.69	5E-8		0.19	[0.11-0.27] unit decrease	Illumina [10500000] (imputed)	N
941	chr11	46745002	46745003	rs5896	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	F2	rs5896-C	0.8611	7E-11		0.131	[0.091-0.171] unit decrease	Affymetrix [~ 11900000] (imputed)	N
941	chr11	46747661	46747662	rs5899	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p11.2	ARHGAP1	rs5899-C	0.9890625	8E-14	(ARHGAP1, 11955_1_3)	0.8348867	[0.62-1.05] unit increase	Illumina [> 1000000] (imputed)	N
941	chr11	46755387	46755388	rs61884307	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11p11.2	ACP2, AMBRA1, ARFGAP2, ARHGAP1, ATG13, C11orf49, CHRM4, CKAP5, CREB3L1, DDB2, DGKZ, F2, HARBI1, LOC101928943, LRP4, LRP4-AS1, MADD, MDK, MIR3160-1, MIR3160-2, MIR4688, MIR5582, MIR6745, MYBPC3, NR1H3, PACSIN3, SNORD67, ZNF408	rs61884307-C		3E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [NR]	N
941	chr11	46759708	46759709	rs3136508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p11.2	F2	rs3136508-C	0.098942	1E-12		0.026977861	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
941	chr11	46760755	46760756	rs3136516	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	11p11.2	F2	rs3136516-G	NR	1E-15		1.08	[1.06-1.11]	Affymetrix, Illumina [12923718] (imputed)	N
941	chr11	46760755	46760756	rs3136516	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	11p11.2	F2	rs3136516-G	0.48	8E-9	(Conditioned on rs1799963)	1.1	[1.06-1.13]	Affymetrix [9155762] (imputed)	N
941	chr11	46761054	46761055	rs1799963	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	11p11.2	F2	rs1799963-A	0.0111	1E-59		1.881934	[1.74-2.03]	Affymetrix [up to 34000000] (imputed)	N
941	chr11	46761054	46761055	rs1799963	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs1799963-?	NR	3E-30		0.5587	[0.46-0.65] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
941	chr11	46761054	46761055	rs1799963	28373160	Klarin D	2017-04-01	Circ Cardiovasc Genet	Genetic Analysis of Venous Thromboembolism in UK Biobank Identifies the ZFPM2 Locus and Implicates Obesity as a Causal Risk Factor.	Venous thromboembolism	3,290 European ancestry cases, 116,868 European ancestry controls	65,734 cases and controls (see Germain, 2015)	11p11.2	F2	rs1799963-A	0.01	5E-13		2.63	[2.03-3.40]	Affymetrix [9155762] (imputed)	N
941	chr11	46761054	46761055	rs1799963	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	11p11.2	F2	rs1799963-A	0.0145	1E-24		1.9531249	[1.74-2.19]	Illumina [at least 560000] (imputed)	N
941	chr11	46761054	46761055	rs1799963	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	11p11.2	F2	rs1799963-A	0.010	2E-9		2.29	[1.75-2.99]	Affymetrix, Illumina [6751884] (imputed)	N
941	chr11	46766090	46766091	rs138130331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs138130331-A	NR	1E-14		0.3265	[0.24-0.41] unit increase	Affymetrix [9000000] (imputed)	N
941	chr11	46766889	46766890	rs61884327	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs61884327-T	0.9022	5E-16		0.0801	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
941	chr11	46781413	46781414	rs150058248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs150058248-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
941	chr11	46783434	46783435	rs61884328	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	11p11.2	NR	rs61884328-T	0.9013	2E-10		0.1063	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
941	chr11	46788690	46788691	rs4534535	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	CKAP5	rs4534535-T	0.1384	3E-9		0.1739	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
942	chr11	46804760	46804761	rs11038990	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	11p11.2	MIR5582, F2, CKAP5	rs11038990-?	NR	6E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [11480632] (imputed)	N
942	chr11	46805574	46805575	rs7941964	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11p11.2	NR	rs7941964-G		3E-9		0.12	[0.081-0.159] unit increase	NR [NR]	N
942	chr11	46815632	46815633	rs4506602	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA5	5,356 Icelandic ancestry individuals	NA	11p11.2		rs4506602-C	0.4515	5E-12		0.125758	[0.09-0.161] unit decrease	Illumina [7506463] (imputed)	N
942	chr11	46815632	46815633	rs4506602	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRAP	5,359 Icelandic ancestry individuals	NA	11p11.2		rs4506602-C	0.4515	9E-16		0.147239	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
942	chr11	46849359	46849360	rs1007738	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	11p11.2	LRP4	rs1007738-A	0.77	7E-7		0.08	[0.05-0.11] s.d. decrease	Illumina [305051]	N
942	chr11	46852838	46852839	rs7947747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DMKN	5,361 Icelandic ancestry individuals	NA	11p11.2		rs7947747-A	0.437	4E-12		0.130465	[0.094-0.167] unit increase	Illumina [7506463] (imputed)	N
942	chr11	46856535	46856536	rs10838622	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs10838622-T	0.358	3E-13	(European)	0.0491	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
942	chr11	46859866	46859867	rs117103154	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.2	CKAP5	rs117103154-C	0.0133724	2E-11	(N-acetyl-aspartyl-glutamate (NAAG))	0.649	[0.46-0.84] unit decrease	Illumina [13039987] (imputed)	N
942	chr11	46859866	46859867	rs117103154	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p11.2	CKAP5	rs117103154-C	0.0133724	2E-11	(N-acetyl-aspartyl-glutamate (NAAG))	0.649	[0.46-0.84] unit decrease	Illumina [13039987] (imputed)	N
942	chr11	46880591	46880592	rs149082597	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p11.2	LRP4-AS1	rs149082597-G	0.99836	2E-10		0.142748	[0.099-0.187] unit increase	NR [13737936] (imputed)	N
942	chr11	46884712	46884713	rs1585453	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11p11.2	LRP4	rs1585453-A	0.8908	4E-21		0.3892	[0.31-0.47] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
942	chr11	46890196	46890197	rs2290883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11p11.2		rs2290883-G	0.867451	2E-9		0.0354498	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
942	chr11	46893107	46893108	rs2306029	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	LRP4	rs2306029-C	0.448	8E-6		0.0269	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
942	chr11	46897252	46897253	rs2306032	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs2306032-C	0.627	2E-14		0.0457	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
942	chr11	46898770	46898771	rs6485702	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11p11.2		rs6485702-T	0.32	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
942	chr11	46898770	46898771	rs6485702	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p11.2	LRP4	rs6485702-T	0.34042	3E-63		0.0326915	[0.029-0.037] unit increase	NR [13737936] (imputed)	N
942	chr11	46900658	46900659	rs2306028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11p11.2		rs2306028-G	0.867647	1E-8		0.0337012	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
942	chr11	46906844	46906845	rs10838629	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p11.2	NR	rs10838629-A	0.770084494000445	1E-8		0.006250047	[0.0041-0.0084] unit increase	NR [NR]	N
942	chr11	46906844	46906845	rs10838629	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p11.2	NR	rs10838629-A	0.770084494000445	2E-8		0.0076887123	[0.005-0.0104] unit increase	NR [NR]	N
942	chr11	46906844	46906845	rs10838629	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p11.2	NR	rs10838629-A	0.770084494000445	1E-8		0.010085243	[0.0066-0.0136] unit increase	NR [NR]	N
942	chr11	46906844	46906845	rs10838629	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p11.2	NR	rs10838629-A	0.770084494000445	2E-8		0.0063753	[0.0042-0.0086] unit increase	NR [NR]	N
942	chr11	46907826	46907827	rs2306027	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11p11.2	LRP4	rs2306027-T	0.2797	2E-8	(AA)	0.0802	[0.052-0.108] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
942	chr11	46908729	46908730	rs7118404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.2		rs7118404-?	NR	1E-65				NR [~ 8900000] (imputed)	N
943	chr11	46924664	46924665	rs12806687	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11p11.2	LRP4	rs12806687-C	0.339	4E-9		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
943	chr11	46924664	46924665	rs12806687	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs12806687-?	NR	4E-66		0.0359278	[0.032-0.04] unit increase	Affymetrix [20259828] (imputed)	N
943	chr11	46924664	46924665	rs12806687	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p11.2	LRP4	rs12806687-C	0.343341	3E-15	(women)	0.0365442	[0.027-0.046] unit increase	NR [17166351] (imputed)	N
943	chr11	46924664	46924665	rs12806687	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p11.2	LRP4	rs12806687-C	0.342642	3E-32		0.0418946	[0.035-0.049] unit increase	NR [17166351] (imputed)	N
943	chr11	46924664	46924665	rs12806687	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11p11.2	LRP4	rs12806687-C	0.34184	2E-20	(men)	0.0493903	[0.039-0.06] unit increase	NR [17166351] (imputed)	N
943	chr11	46929953	46929954	rs10838634	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p11.2	NR	rs10838634-A	NR	5E-8		1.1	[NR]	Illumina [7158791] (imputed)	N
943	chr11	46931156	46931157	rs11039026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11p11.2		rs11039026-C	0.856911	1E-8		0.0325234	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
943	chr11	46931156	46931157	rs11039026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11p11.2		rs11039026-C	0.856911	3E-8		0.0307751	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
943	chr11	46933310	46933311	rs191945075	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	11p11.2	LRP4, F2	rs191945075-A	NR	1E-31		1.86	[1.68-2.07]	Affymetrix, Illumina [12923718] (imputed)	N
943	chr11	46933310	46933311	rs191945075	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs191945075-?	NR	1E-31		0.6221	[0.52-0.73] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
943	chr11	46935184	46935185	rs9667108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	LRP4	rs9667108-?	NR	2E-8		0.010319	[0.0067-0.0139] unit increase	Affymetrix [805426] (imputed)	N
943	chr11	46939026	46939027	rs7940441	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs7940441-A	NR	2E-8		5.602	z score increase	Affymetrix [10847151] (imputed)	N
943	chr11	46940292	46940293	rs78245588	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11p11.2	LRP4	rs78245588-T	0.063	1E-17		0.44	[0.34-0.55] unit decrease	Affymetrix [339439]	N
943	chr11	46945226	46945227	rs10838635	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.2	HARBI1	rs10838635-A	0.247164	3E-10		6.3	z score increase	NR [10847151] (imputed)	N
943	chr11	46949600	46949601	rs78744550	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	LRP4, C11orf49	rs78744550-T	0.8547	1E-12		0.144	[0.1-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
943	chr11	46966807	46966808	rs2903517	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p11.2	NR	rs2903517-G	0.17495	3E-8		0.05138861	[0.033-0.07] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
943	chr11	46991807	46991808	rs112192770	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	C11orf49	rs112192770-C	0.946968	3E-10		0.0286032	[0.02-0.038] unit decrease	Affymetrix [NR] (imputed)	N
943	chr11	47001907	47001908	rs7130812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	C11orf49	rs7130812-C	NR	2E-8		0.0165983	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
943	chr11	47031733	47031734	rs146399108	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Peripheral vascular disease	4,301 European ancestry cases, 52,336 European ancestry controls	NA	11p11.2		rs146399108-A	0.0134253	4E-8		1.67		Affymetrix [15468298] (imputed)	N
943	chr11	47046553	47046554	rs7128325	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs7128325-?	NR	2E-8		0.01376	[0.0089-0.0186] unit decrease	Affymetrix [10847151] (imputed)	N
943	chr11	47046553	47046554	rs7128325	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p11.2	MDK	rs7128325-A	0.327132	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
944	chr11	47087127	47087128	rs7118546	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs7118546-C	0.3335	3E-12	(European)	0.0493	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
944	chr11	47109497	47109498	rs149639773	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs149639773-?	NR	2E-28		0.5897	[0.49-0.69] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
944	chr11	47110591	47110592	rs60201196	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs60201196-T	0.0913	2E-14		0.0759	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
944	chr11	47119874	47119875	rs3885274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11p11.2	C11orf49	rs3885274-A	NR	5E-8		0.0188255	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
944	chr11	47119874	47119875	rs3885274	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs3885274-?	NR	3E-69		0.037657	[0.033-0.042] unit increase	Affymetrix [20259828] (imputed)	N
944	chr11	47124950	47124950	rs35518693	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs35518693-?	NR	3E-52		0.0346291	[0.03-0.039] unit increase	Affymetrix [20259828] (imputed)	N
944	chr11	47127152	47127153	rs7117404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs7117404-G	NR	2E-15		0.0289	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
944	chr11	47127152	47127153	rs7117404	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	C11orf49	rs7117404-G	0.153	9E-6		0.0398	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
944	chr11	47129396	47129397	rs12417519	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.2	NR	rs12417519-T	0.233044	5E-10		6.21	z score decrease	NR [10847151] (imputed)	N
944	chr11	47176004	47176005	rs747650	24399259	He L	2014-01-07	Nat Commun	Two new susceptibility loci 1q24.2 and 11p11.2 confer risk to severe acne.	Acne (severe)	1,031 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	1,860 Han Chinese ancestry cases, 3,660 Han Chinese ancestry controls	11p11.2	DDB2	rs747650-G	0.3242	4E-9	(fixed effect model)	1.24	[1.16-1.34]	Illumina [809305]	N
944	chr11	47183426	47183427	rs117749721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs117749721-?	NR	4E-8				NR [~ 8900000] (imputed)	N
944	chr11	47183689	47183690	rs78112569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs78112569-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
945	chr11	47186423	47186424	rs1055447	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	ARFGAP2	rs1055447-C	NR	5E-8		0.0094931	[0.0061-0.0129] unit increase	Affymetrix [18485882] (imputed)	N
945	chr11	47186423	47186424	rs1055447	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs1055447-?	NR	6E-12		0.01623	[0.012-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
945	chr11	47191237	47191238	rs2867972	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs2867972-?	NR	2E-9		0.01654	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
945	chr11	47198637	47198638	rs61897848	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.2	NR	rs61897848-?	NR	6E-8		0.0093358	[0.006-0.0127] unit increase	Affymetrix [805426] (imputed)	N
945	chr11	47204847	47204848	rs77675579	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11p11.2	NR	rs77675579-T	0.08885	3E-8	(CIITA)	0.1756	NR unit increase	Illumina [1671387] (imputed)	N
945	chr11	47204847	47204848	rs77675579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11p11.2		rs77675579-?	NR	8E-10				NR [~ 8900000] (imputed)	N
945	chr11	47209471	47209472	rs901750	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11p11.2		rs901750-G	0.444	1E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
945	chr11	47211785	47211786	rs184907858	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs184907858-A	0.905	3E-13		0.0726	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
945	chr11	47219309	47219310	rs10769248	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	ENSG00000243802	rs10769248-G	NR	7E-9		0.010117	[0.0067-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
945	chr11	47220777	47220778	rs182879407	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs182879407-?	NR	4E-26		0.5332	[0.43-0.63] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
945	chr11	47225995	47225996	rs17197710	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	11p11.2	PACSIN3	rs17197710-T	0.946	8E-7	(East Asian)	0.06	[0.036-0.084] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
945	chr11	47232037	47232038	rs11039131	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11p11.2	NR	rs11039131-C	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
945	chr11	47235732	47235732	rs11444403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs11444403-?	NR	3E-27		0.0602956	[0.049-0.072] unit increase	Affymetrix [20259828] (imputed)	N
945	chr11	47236293	47236294	rs3758666	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.2	NR	rs3758666-A	0.248115	8E-10		6.15	z score decrease	NR [10847151] (imputed)	N
945	chr11	47236297	47236298	rs3758667	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs3758667-?	NR	3E-11		0.01798	[0.013-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
945	chr11	47237679	47237680	rs2291120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p11.2		rs2291120-?	NR	2E-8				NR [~ 8900000] (imputed)	N
945	chr11	47246396	47246397	rs7395581	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11p11.2	DDB2	rs7395581-?		1E-8		0.0269	[0.017-0.036] unit increase	Illumina [31500000] (imputed)	N
945	chr11	47246396	47246397	rs7395581	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs7395581-G	NR	1E-19		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47246396	47246397	rs7395581	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs7395581-G	0.291	2E-17	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47246396	47246397	rs7395581	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	11p11.2	MADD	rs7395581-G	0.35	2E-21		0.059	[0.047-0.071] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
945	chr11	47249462	47249463	rs2596398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11p11.2		rs2596398-C	NR	1E-14		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
945	chr11	47252106	47252107	rs4647728	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs4647728-A	0.0339	6E-11	(European)	0.124	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
945	chr11	47254036	47254036	rs752976285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11p11.2		rs752976285-T	0.815699	5E-10		0.0338022	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
945	chr11	47254036	47254036	rs752976285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p11.2	DDB2	rs752976285-TA	0.184724	2E-19		0.026400387	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
945	chr11	47254036	47254036	rs752976285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11p11.2	NR	rs752976285-I	0.184634	2E-19		0.023794	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
945	chr11	47254050	47254051	rs830083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs830083-G	0.157103	9E-14		0.0403355	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
945	chr11	47254050	47254051	rs830083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.2		rs830083-G	0.157103	3E-8		0.0312201	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
945	chr11	47254050	47254051	rs830083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs830083-G	0.157103	1E-11		0.0371532	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
945	chr11	47254050	47254051	rs830083	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs830083-G	0.157103	1E-15		0.0432008	[0.033-0.054] unit increase	NR [11722792] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	6E-14		0.0245	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	3E-14		0.0248	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	6E-32		0.0385	[0.032-0.045] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	3E-57		0.0545	[0.048-0.061] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	6E-22		0.0315	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs3781619-A	NR	4E-28		0.0377	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47255316	47255317	rs3781619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11p11.2	DDB2	rs3781619-A	0.154924	2E-13		0.022412892	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr11	47259667	47259668	rs326222	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.2	DDB2	rs326222-T	0.302045	2E-31		0.0252299	[0.021-0.029] unit decrease	Affymetrix [NR] (imputed)	N
945	chr11	47259667	47259668	rs326222	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	11p11.2	NR	rs326222-T	0.3638	7E-29				Affymetrix, Illumina [at least 2500000] (imputed)	N
945	chr11	47259727	47259728	rs143049891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p11.2	NR	rs143049891-A	0.0047840000000000105	1E-9		0.0354334	[0.024-0.047] unit increase	Affymetrix [16582909] (imputed)	N
945	chr11	47259727	47259728	rs143049891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p11.2	NR	rs143049891-A	0.0047840000000000105	2E-7		0.0342163	[0.021-0.047] unit increase	Affymetrix [16582965] (imputed)	N
945	chr11	47260318	47260319	rs901746	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11p11.2	MADD	rs901746-?	NR	2E-21		0.009196	[0.0072-0.0112] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
945	chr11	47260318	47260319	rs901746	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11p11.2	MADD	rs901746-?	NR	5E-20		0.009012	[0.007-0.011] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
945	chr11	47266470	47266471	rs75393320	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p11.2	ACP2	rs75393320-C	0.1212	8E-45		0.0647	[0.056-0.074] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
945	chr11	47268309	47268310	rs35677603	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11p11.2	ACP2	rs35677603-T	NR	1E-9		0.0193536	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
945	chr11	47269158	47269159	rs4752973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p11.2		rs4752973-T	0.810738	7E-12		0.0357304	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
945	chr11	47269158	47269159	rs4752973	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	11p11.2		rs4752973-T	0.811	3E-20				Affymetrix [10369434] (imputed)	N
945	chr11	47275063	47275064	rs10838681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.2		rs10838681-G	0.733217	7E-10		0.0269316	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
945	chr11	47275063	47275064	rs10838681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11p11.2		rs10838681-G	0.733216	1E-8		0.0256104	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
945	chr11	47275063	47275064	rs10838681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11p11.2		rs10838681-G	0.733227	4E-8		0.023701	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
945	chr11	47275063	47275064	rs10838681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p11.2		rs10838681-G	0.733216	3E-8		0.0244479	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
945	chr11	47275063	47275064	rs10838681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11p11.2		rs10838681-A	NR	2E-22		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
945	chr11	47275063	47275064	rs10838681	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11p11.2	NR1H3	rs10838681-?	NR	6E-19		0.026	[0.021-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
945	chr11	47275063	47275064	rs10838681	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11p11.2	NR	rs10838681-?	NR	2E-6		0.5428951	[0.32-0.77] unit increase	Illumina [31978362] (imputed)	N
945	chr11	47275063	47275064	rs10838681	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p11.2	NR1H3	rs10838681-G	0.73	3E-18		0.124	[0.097-0.151] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
945	chr11	47275063	47275064	rs10838681	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838681-G	NR	4E-20		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47275063	47275064	rs10838681	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838681-G	0.747	1E-16	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47275063	47275064	rs10838681	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	11p11.2	NR1H3	rs10838681-G	0.64	1E-9	(HDL)	0.08	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
945	chr11	47276674	47276675	rs11039149	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	11p11.2	NR1H3	rs11039149-G	0.276328	5E-9		0.313657	[0.21-0.42] unit increase	Affymetrix [9463307] (imputed)	N
945	chr11	47276674	47276675	rs11039149	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	11p11.2	NR1H3	rs11039149-G	0.276328	2E-9		0.00499234	[0.0034-0.0066] unit decrease	Affymetrix [9463307] (imputed)	N
945	chr11	47276674	47276675	rs11039149	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	NR1H3	rs11039149-?	NR	8E-12		0.0468791	NR unit decrease	Affymetrix [464137]	N
945	chr11	47276674	47276675	rs11039149	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs11039149-G	NR	6E-14		0.01936	[0.014-0.024] unit increase	Affymetrix [10847151] (imputed)	N
945	chr11	47276674	47276675	rs11039149	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p11.2	ARHGAP1	rs11039149-A	0.269477	2E-13		7.36	z score decrease	NR [10847151] (imputed)	N
945	chr11	47276674	47276675	rs11039149	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11p11.2	ARHGAP1	rs11039149-A	0.269477	1E-11		6.77	z score decrease	NR [10847151] (imputed)	N
945	chr11	47276817	47276818	rs77682558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs77682558-A	NR	2E-14		0.0503	[0.037-0.063] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47276817	47276818	rs77682558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs77682558-A	NR	4E-20		0.0629	[0.05-0.076] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47276817	47276818	rs77682558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs77682558-A	NR	3E-10		0.0434	[0.03-0.057] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47278205	47278205	rs537389171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs537389171-T	0.852807	8E-15		0.0434802	[0.033-0.054] unit increase	NR [11722792] (imputed)	N
945	chr11	47278205	47278205	rs537389171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs537389171-T	0.852807	5E-10		0.034372	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
945	chr11	47278501	47278502	rs11039154	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11p11.2	NR1H3	rs11039154-T	0.2769	3E-9		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
945	chr11	47282023	47282024	rs2279238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p11.2		rs2279238-C	0.845361	3E-12		0.0377645	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
945	chr11	47282023	47282024	rs2279238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11p11.2		rs2279238-C	0.845372	1E-14		0.0427771	[0.032-0.054] unit increase	NR [11722792] (imputed)	N
945	chr11	47282023	47282024	rs2279238	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11p11.2	NR1H3	rs2279238-?	NR	2E-8		0.02137	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
945	chr11	47283414	47283415	rs41275186	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	11p11.2		rs41275186-A	0.967	2E-11				Affymetrix [10369434] (imputed)	N
945	chr11	47284302	47284314	rs6144337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	11p11.2	NR1H3	rs6144337-T	0.1539	3E-9		0.02940434	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
945	chr11	47286289	47286290	rs7120118	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11p11.2	NR	rs7120118-?	NR	7E-6		0.5146545	[0.29-0.74] unit increase	Illumina [31978362] (imputed)	N
945	chr11	47286289	47286290	rs7120118	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p11.2	NR1H3	rs7120118-T	0.6572	1E-22		0.0275	[0.022-0.033] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
945	chr11	47286289	47286290	rs7120118	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish founder individuals	NA	11p11.2	NR1H3	rs7120118-G	0.42	4E-8		0.04	[0.03-0.05] mmol/l increase	Illumina [329091]	N
945	chr11	47290146	47290147	rs61731956	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11p11.2		rs61731956-?	NR	4E-41		0.522805	[0.44-0.6] unit increase	NR [9800000] (imputed)	N
945	chr11	47290146	47290147	rs61731956	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11p11.2		rs61731956-?	NR	1E-14		0.319017	[0.24-0.4] unit increase	NR [9800000] (imputed)	N
945	chr11	47290146	47290147	rs61731956	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs61731956-A	NR	8E-22		0.4631	[0.37-0.56] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47290375	47290376	rs16938582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11p11.2		rs16938582-G	0.008355	5E-8		0.1509	[0.097-0.205] unit increase	Illumina [13465896] (imputed)	N
945	chr11	47293798	47293799	rs10501320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p11.2		rs10501320-C	NR	6E-25		0.0269	[0.022-0.032] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
945	chr11	47293798	47293799	rs10501320	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p11.2	MADD	rs10501320-C	0.2518	1E-29		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
945	chr11	47293798	47293799	rs10501320	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting glucose levels (pleiotropy)	54,162 European ancestry cases, 58,047 European ancestry individuals	NA	11p11.2	ACP2, AGBL2, AMBRA1, ARFGAP2, ARHGAP1, ATG13, C1QTNF4, C11orf49, CELF1, CHRM4, CKAP5, CREB3L1, DDB2, DGKZ, F2, FAM180B, FNBP4, HARBI1, KBTBD4, LRP4, LRP4-AS1, MADD, MDK, MIR3160-1, MIR3160-2, MIR4688, MIR5582, MIR6745, MTCH2, MYBPC3, NDUFS3, NR1H3, NUP160, PACSIN3, PSMC3, PTPMT1, PTPRJ, RAPSN, SLC39A13, SNORD67, SPI1, ZNF408	rs10501320-?		3E-16				NR [NR]	N
945	chr11	47293798	47293799	rs10501320	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p11.2	NR	rs10501320-C	NR	3E-11		0.01791	[0.013-0.023] unit increase	Affymetrix [10847151] (imputed)	N
945	chr11	47293798	47293799	rs10501320	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	11p11.2	ARHGAP1	rs10501320-C	0.25471	7E-12		6.85	z score increase	NR [10847151] (imputed)	N
945	chr11	47293798	47293799	rs10501320	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	11p11.2	ARHGAP1	rs10501320-C	0.25471	1E-9		6.11	z score increase	NR [10847151] (imputed)	N
945	chr11	47293798	47293799	rs10501320	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11p11.2	MADD	rs10501320-G	0.72	1E-88				Affymetrix, Illumina [~ 2500000] (imputed)	N
945	chr11	47298359	47298360	rs326214	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11p11.2		rs326214-A	0.5802	1E-15		0.0092	[0.007-0.0114] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
945	chr11	47298359	47298360	rs326214	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11p11.2	LRP4	rs326214-A	0.686	6E-39	(Trans-ethnic initial)	0.0609	[0.052-0.07] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
945	chr11	47303274	47303275	rs326217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs326217-C	NR	9E-10		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
945	chr11	47303274	47303275	rs326217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs326217-C	NR	4E-14		0.0206	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47303274	47303275	rs326217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs326217-C	NR	6E-41		0.0366	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47303274	47303275	rs326217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p11.2	NR	rs326217-C	NR	1E-12		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47303274	47303275	rs326217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs326217-C	NR	3E-18		0.0239	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47306584	47306585	rs1051006	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	11p11.2		rs1051006-A	0.17	8E-7		0.8	[0.49-1.11] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
945	chr11	47306584	47306585	rs1051006	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	11p11.2	MADD	rs1051006-A	0.31	3E-8		0.031	[0.019-0.043] unit decrease	Illumina [242071]	N
945	chr11	47306629	47306630	rs35233100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs35233100-T	NR	1E-14		0.0392	[0.029-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47306629	47306630	rs35233100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p11.2	NR	rs35233100-T	NR	1E-15		0.0416	[0.031-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr11	47306629	47306630	rs35233100	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p11.2	MADD	rs35233100-T	0.0617	4E-12		0.0243579	[0.017-0.031] unit decrease	Affymetrix [11880941] (imputed)	N
945	chr11	47306629	47306630	rs35233100	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	11p11.2	MADD	rs35233100-T	0.037	8E-15		0.1	[0.075-0.125] unit decrease	Illumina [242071]	N
945	chr11	47311366	47311367	rs10838686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838686-G	NR	1E-22		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47311366	47311367	rs10838686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838686-G	0.833	5E-19	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr11	47312688	47312689	rs11039165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p11.2		rs11039165-G	NR	2E-31		0.0321	[0.027-0.037] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
945	chr11	47312891	47312892	rs10838687	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11p11.2	MADD	rs10838687-T	0.7918	2E-13		1.035102		Affymetrix [11880941] (imputed)	N
945	chr11	47312891	47312892	rs10838687	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	11p11.2	MADD	rs10838687-G	0.22	9E-13		0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
945	chr11	47312891	47312892	rs10838687	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11p11.2	MADD	rs10838687-T	0.80	7E-12				Affymetrix, Illumina [~ 2500000] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	3E-15		0.0344639	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	9E-16		0.0369409	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	2E-15		0.0370539	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	8E-14		0.0325447	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710537	8E-19		0.037997	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	2E-10		0.028915	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	1E-17		0.0394954	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	1E-18		0.0382203	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	2E-18		0.0398951	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
945	chr11	47316568	47316568	rs113012334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs113012334-G	0.710541	7E-17		0.0364612	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
946	chr11	47319340	47319340	rs530255848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11p11.2		rs530255848-C	0.830927	1E-11		0.0363377	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	6E-21		0.0416472	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	2E-19		0.0400349	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	7E-24		0.0451258	[0.036-0.054] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	1E-20		0.0412926	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	4E-17		0.0382506	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	9E-23		0.0434602	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	1E-22		0.0438059	[0.035-0.053] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	2E-22		0.0433791	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322007	47322007	rs200644264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs200644264-CG	0.788465	8E-17		0.0372915	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
946	chr11	47322494	47322494	rs138226373	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	11p11.2		rs138226373-A	0.9	3E-19		0.1273	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
946	chr11	47324665	47324666	rs4752824	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs4752824-T	NR	8E-21		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
946	chr11	47324665	47324666	rs4752824	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs4752824-T	0.692	5E-18	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
946	chr11	47324861	47324862	rs4752978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p11.2		rs4752978-?	NR	9E-8				NR [~ 8900000] (imputed)	N
946	chr11	47327570	47327571	rs74757308	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs74757308-C	NR	9E-11		0.0523	[0.036-0.068] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47333684	47333685	rs3847502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11p11.2		rs3847502-A	NR	9E-77		0.045	[0.04-0.05] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
946	chr11	47334523	47334524	rs10838689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11p11.2	Intergenic	rs10838689-G	0.8291	1E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	11p11.2	MADD	rs7944584-A	0.731945	2E-12		0.023879	[0.017-0.031] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	11p11.2	MADD	rs7944584-A	0.731945	5E-10		0.022726	[0.016-0.03] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	11p11.2	MADD	rs7944584-A	0.731945	3E-24		0.024236	[0.02-0.029] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	11p11.2	MADD	rs7944584-T	0.238511761691845	5E-12		0.024974186	[0.018-0.032] unit decrease	Illumina [197481]	N
946	chr11	47336319	47336320	rs7944584	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	11p11.2	MADD	rs7944584-T	0.181	5E-25		0.065	[0.053-0.077] unit decrease	Illumina [242071]	N
946	chr11	47336319	47336320	rs7944584	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	MADD	rs7944584-A	0.7264	4E-12		9.0E-4	[-0.00058-0.00238] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	MADD	rs7944584-A	0.7262	4E-13		0.0253	[0.018-0.032] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
946	chr11	47336319	47336320	rs7944584	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	11p11.2	MADD	rs7944584-A	0.75	2E-18		0.021	[0.015-0.027] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
946	chr11	47336441	47336442	rs6485751	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p11.2		rs6485751-C	0.2097	1E-9		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
946	chr11	47337383	47337386	rs138135047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11p11.2		rs138135047-C	NR	2E-24		0.0267	[0.022-0.032] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
946	chr11	47338585	47338586	rs61897360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11p11.2	MADD	rs61897360-T	0.033066	7E-13		0.044827726	[0.033-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr11	47345099	47345100	rs10838692	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	11p11.2	MADD	rs10838692-C	NR	9E-10		1.0869565	[1.06-1.12]	Affymetrix [at least 665500] (imputed)	N
946	chr11	47345099	47345100	rs10838692	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838692-T	NR	6E-20		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
946	chr11	47345099	47345100	rs10838692	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11p11.2	NR	rs10838692-T	0.691	5E-17	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
946	chr11	47346722	47346723	rs11039182	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	11p11.2	MADD	rs11039182-?	NR	6E-44				NR [3144808] (imputed)	N
946	chr11	47346722	47346723	rs11039182	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	11p11.2	MADD	rs11039182-?	NR	3E-9				NR [NR]	N
946	chr11	47346722	47346723	rs11039182	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	MADD	rs11039182-T	NR	9E-11		0.011206	[0.0078-0.0146] unit increase	Affymetrix [18485882] (imputed)	N
946	chr11	47346722	47346723	rs11039182	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs11039182-T	NR	5E-14		7.522	z score decrease	Affymetrix [10847151] (imputed)	N
946	chr11	47346722	47346723	rs11039182	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	ARHGAP1	rs11039182-T	0.269312	3E-14		7.6	z score decrease	NR [10847151] (imputed)	N
946	chr11	47346722	47346723	rs11039182	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	11p11.2	MADD	rs11039182-T	0.7	3E-6		0.0678	[0.040-0.096] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
946	chr11	47346939	47346940	rs11039183	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11p11.2	NR	rs11039183-A	0.3501	6E-6	(EA)	0.0301	[0.017-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
946	chr11	47349845	47349846	rs753992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11p11.2		rs753992-G	0.825255	9E-14		0.0392854	[0.029-0.05] unit decrease	NR [11722792] (imputed)	N
946	chr11	47349845	47349846	rs753992	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	11p11.2	MADD	rs753992-G	0.71	3E-6		1.098901	[1.05-1.15]	NR [~ 55000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	2E-19		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	4E-27		0.0277	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	4E-72		0.048	[0.043-0.053] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	6E-11		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	7E-21		0.024	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	6E-15		0.0209	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs1052373-T	NR	4E-43		0.0369	[0.032-0.042] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47354786	47354787	rs1052373	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	MYBPC3	rs1052373-C	0.678129	1E-106		0.0446282	[0.041-0.049] unit decrease	Affymetrix [NR] (imputed)	N
946	chr11	47354904	47354905	rs11570115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs11570115-C	NR	3E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354904	47354905	rs11570115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs11570115-C	NR	3E-16		0.0339	[0.026-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354904	47354905	rs11570115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p11.2	NR	rs11570115-C	NR	1E-18		0.0374	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47354904	47354905	rs11570115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs11570115-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
946	chr11	47355474	47355475	rs11570112	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11p11.2	NR	rs11570112-?	NR	4E-12		15745.091	NR unit decrease	Illumina [2379855]	N
946	chr11	47356869	47356870	rs2301216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs2301216-?	NR	4E-10				NR [~ 8900000] (imputed)	N
946	chr11	47357169	47357170	rs2254240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11p11.2		rs2254240-A	NR	3E-18		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
946	chr11	47357169	47357170	rs2254240	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	MYBPC3	rs2254240-A	0.2321	4E-14		0.2275	[0.17-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	1E-9		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	6E-11		0.0181	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	5E-12		0.02	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	3E-44		0.0403	[0.035-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	2E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47359705	47359706	rs11570094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs11570094-A	NR	4E-23		0.0287	[0.023-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	7E-18		0.0216	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	6E-32		0.0296	[0.025-0.034] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	4E-72		0.047	[0.042-0.052] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	3E-22		0.0243	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	1E-13		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs2269434-C	NR	2E-44		0.0367	[0.032-0.042] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47360411	47360412	rs2269434	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.2	MYBPC3	rs2269434-T	0.65461	3E-63		0.0345679	[0.031-0.039] unit decrease	Affymetrix [NR] (imputed)	N
946	chr11	47360411	47360412	rs2269434	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.2	NR	rs2269434-T	0.653244	2E-29		0.0243335	[0.02-0.029] unit increase	NR [NR]	N
946	chr11	47360411	47360412	rs2269434	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11p11.2	MYBPC3	rs2269434-C	NR	1E-13		1.0906315	NR	Affymetrix, Illumina [8278136] (imputed)	N
946	chr11	47361083	47361084	rs2856653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11p11.2		rs2856653-C	NR	3E-13		0.0456	[0.033-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
946	chr11	47361083	47361084	rs2856653	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p11.2	MYBPC3	rs2856653-T	0.358513	5E-13		0.045660183	[0.033-0.058] unit increase	Affymetrix [7288503] (imputed)	N
946	chr11	47361856	47361857	rs7928073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11p11.2	Intergenic	rs7928073-T	0.1723	5E-13	(MTAG)	0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.2	MYBPC3	rs10769254-C	NR	6E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.2	MYBPC3	rs10769254-C	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.2	MYBPC3	rs10769254-C	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.2	MYBPC3	rs10769254-C	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	2E-7		0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.2	MYBPC3	rs10769254-C	NR	5E-28	(EA)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.2	MYBPC3	rs10769254-C	NR	4E-29				Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.2	MYBPC3	rs10769254-C	NR	2E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.2	MYBPC3	rs10769254-C	NR	6E-31	(EA)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.2	MYBPC3	rs10769254-C	NR	5E-69				Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.2	MYBPC3	rs10769254-C	NR	1E-48	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	6E-7	(Asian)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	4E-22		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	2E-17	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	9E-16		0.01205	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	4E-9	(EA)	0.01197	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11p11.2	MYBPC3	rs10769254-C	NR	2E-7	(Asian)	0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47362464	47362465	rs10769254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p11.2		rs10769254-?	NR	1E-15				NR [~ 8900000] (imputed)	N
946	chr11	47365198	47365199	rs2856650	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p11.2	NR	rs2856650-G	0.701722	4E-19		0.018843	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
946	chr11	47367370	47367371	rs10769255	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11p11.2		rs10769255-C	0.824976	9E-10		0.0325237	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
946	chr11	47367370	47367371	rs10769255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11p11.2	Intergenic	rs10769255-T	0.1752	2E-9	(MTAG)	0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	9E-9	(458 ms)	0.0478079	[0.031-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	9E-10	(414 ms)	0.0510437	[0.035-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	6E-12	(436 ms)	0.0572643	[0.041-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	6E-10	(450 ms)	0.0514738	[0.035-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	6E-10	(440 ms)	0.0515219	[0.035-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	6E-10	(418 ms)	0.0514427	[0.035-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	4E-9	(454 ms)	0.0490864	[0.033-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	4E-9	(452 ms)	0.0488369	[0.033-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	4E-11	(432 ms)	0.0550385	[0.039-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	4E-10	(448 ms)	0.0519636	[0.036-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	4E-10	(430 ms)	0.0520672	[0.036-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	3E-9	(444 ms)	0.0492472	[0.033-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	3E-9	(442 ms)	0.0492512	[0.033-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	3E-8	(466 ms)	0.0464159	[0.03-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	3E-8	(460 ms)	0.0462454	[0.03-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	3E-11	(424 ms)	0.0551478	[0.039-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-9	(464 ms)	0.0503592	[0.034-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-9	(456 ms)	0.0500021	[0.034-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-9	(446 ms)	0.0502882	[0.034-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-9	(420 ms)	0.049765	[0.033-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-8	(412 ms)	0.0468035	[0.03-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-12	(434 ms)	0.0584793	[0.042-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-11	(426 ms)	0.0558032	[0.039-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-10	(438 ms)	0.0531537	[0.037-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-10	(428 ms)	0.0533141	[0.037-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	2E-10	(422 ms)	0.0528509	[0.037-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	1E-8	(474 ms)	0.0473893	[0.031-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	1E-8	(462 ms)	0.0476785	[0.031-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370040	47370041	rs3729989	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11p11.2	MYBPC3, SPI1	rs3729989-T	0.869596	1E-10	(416 ms)	0.0537127	[0.037-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
946	chr11	47370606	47370607	rs2697920	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs2697920-C	NR	2E-13		0.0184	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47370606	47370607	rs2697920	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs2697920-C	NR	2E-35		0.0326	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47370606	47370607	rs2697920	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs2697920-C	NR	4E-22		0.0254	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47370606	47370607	rs2697920	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11p11.2	NR	rs2697920-T		2E-14		0.12	[0.081-0.159] unit increase	NR [NR]	N
946	chr11	47370606	47370607	rs2697920	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11p11.2	MYBPC3	rs2697920-?	NR	1E-18		0.1197	[0.093-0.146] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
946	chr11	47370956	47370957	rs2071305	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	11p11.2	MYBPC3	rs2071305-A	0.69	5E-14		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
946	chr11	47371129	47371130	rs11570054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11p11.2		rs11570054-A	NR	7E-10		0.0277	[0.019-0.037] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
946	chr11	47371129	47371130	rs11570054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11p11.2	MYBPC3	rs11570054-A	0.072952	9E-10		0.026702017	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr11	47371441	47371442	rs11570051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs11570051-A	NR	1E-19		0.0509	[0.04-0.062] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47371441	47371442	rs11570051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs11570051-A	NR	4E-22		0.0565	[0.045-0.068] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47371441	47371442	rs11570051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs11570051-A	NR	1E-10		0.0361	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47371441	47371442	rs11570051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs11570051-A	NR	7E-11		0.0383	[0.027-0.05] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47371597	47371598	rs3729986	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs3729986-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
946	chr11	47373424	47373425	rs2856656	24357727	Rocanin-Arjo A	2013-12-19	Blood	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	11p11.2	MYBPC3	rs2856656-C	NR	5E-22	(ETP)	0.189	[0.15-0.23] nM/min increase	NR [6652054] (imputed)	N
946	chr11	47374997	47374998	rs2856661	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11p11.2	NR	rs2856661-A		5E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
946	chr11	47377526	47377527	rs142497874	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	11p11.2	SPI1	rs142497874-?	NR	4E-7	(MCHC)	0.27	[0.17-0.37] unit decrease	Illumina [14948665] (imputed)	N
946	chr11	47378245	47378246	rs193299119	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	11p11.2	SPI1	rs193299119-A	0.009	8E-6		5.6	[2.62-11.96]	Illumina [7959153] (imputed)	N
946	chr11	47378395	47378396	rs10769256	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11p11.2		rs10769256-T	0.39	1E-20		9.34	z score increase	Affymetrix [9061022] (imputed)	N
946	chr11	47378395	47378396	rs10769256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p11.2		rs10769256-T	NR	1E-11		0.0548	[0.039-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
946	chr11	47378395	47378396	rs10769256	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p11.2	NR	rs10769256-T	NR	7E-9		0.01416	[0.0094-0.0189] unit increase	Affymetrix [10847151] (imputed)	N
946	chr11	47378395	47378396	rs10769256	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p11.2	ACP2	rs10769256-T	0.402399	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
946	chr11	47378476	47378478	rs142198257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11p11.2	SPI1	rs142198257-T	0.306971	2E-11		0.016274385	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
946	chr11	47378901	47378903	rs72339224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p11.2	SPI1	rs72339224-T	0.318435	4E-12		0.016755585	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
946	chr11	47379614	47379615	rs1542321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs1542321-G	0.318215	5E-16				Affymetrix, Illumina [17210439] (imputed)	N
946	chr11	47380339	47380340	rs3740688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	11p11.2		rs3740688-G	0.454985	4E-14		0.0311133	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
946	chr11	47380339	47380340	rs3740688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11p11.2		rs3740688-T	NR	2E-17		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
946	chr11	47380339	47380340	rs3740688	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	11p11.2		rs3740688-?	NR	9E-9				Illumina [NR] (imputed)	N
946	chr11	47380339	47380340	rs3740688	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.2	SPI1	rs3740688-G	0.455367	2E-15		0.0156318	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
946	chr11	47380339	47380340	rs3740688	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p11.2	NR	rs3740688-G	NR	2E-8		0.01346	[0.0088-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
946	chr11	47380339	47380340	rs3740688	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11p11.2	NR	rs3740688-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
946	chr11	47380592	47380593	rs3740689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11p11.2	SPI1	rs3740689-A	0.586218	2E-12		0.015722103	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
946	chr11	47380592	47380593	rs3740689	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	SPI1	rs3740689-G	0.4147	3E-26		0.1476	[0.12-0.18] unit increase	Affymetrix [~ 11900000] (imputed)	N
946	chr11	47383274	47383275	rs7105851	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11p11.2	NR	rs7105851-T	0.326044	3E-8		0.03695811	[0.024-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
946	chr11	47387598	47387599	rs935914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11p11.2		rs935914-T	NR	1E-22		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
946	chr11	47388213	47388214	rs12801188	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p11.2	SPI1	rs12801188-A	0.363738	9E-12		0.055872217	[0.04-0.072] unit increase	Affymetrix [7288503] (imputed)	N
946	chr11	47391744	47391745	rs67472071	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p11.2		rs67472071-G	0.675416	6E-11		0.0282135	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
946	chr11	47392113	47392114	rs7928419	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11p11.2	DDB2, ACP2, NR1H3, MADD, MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, NDUFS3, C1QTNF4, FAM180B, MTCH2, AGBL2, FNBP4, NUP160, PTPRJ	rs7928419-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
946	chr11	47393637	47393638	rs4992357	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	NR	rs4992357-?	NR	2E-7		5.215	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
946	chr11	47394304	47394305	rs896817	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	11p11.2	MTCH2	rs896817-A		3E-7		0.0047	[0.0029-0.0065] unit decrease	Illumina [at least 200000]	N
946	chr11	47396653	47396654	rs4752829	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	11p11.2	SPI1	rs4752829-A	0.3	2E-8	(BMI-adjusted)	0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
946	chr11	47397352	47397353	rs56030824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11p11.2		rs56030824-G	0.676887	1E-12		0.0294037	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
946	chr11	47397352	47397353	rs56030824	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11p11.2	NR	rs56030824-A	0.322	1E-13		0.011601888	[0.0085-0.0147] unit decrease	NR [~ 10000000] (imputed)	N
946	chr11	47398962	47398963	rs12146565	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p11.2	NR	rs12146565-G	0.323062	3E-10		0.04770906	[0.033-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
946	chr11	47402614	47402615	rs11827106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11p11.2		rs11827106-A	NR	3E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
946	chr11	47406591	47406592	rs11039216	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	11p11.2	RP11-750H9.5	rs11039216-?	NR	2E-8		0.058	[0.036-0.08] unit decrease	NR [7682250] (imputed)	N
946	chr11	47406591	47406592	rs11039216	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11p11.2	SPI1	rs11039216-T	0.4448	1E-8		0.0044	[0.0028-0.006] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
946	chr11	47406591	47406592	rs11039216	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	SLC39A13	rs11039216-T	0.5159	1E-21		0.3127	[0.25-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
946	chr11	47406591	47406592	rs11039216	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	11p11.2	SPI1, AGBL2, NUP160, PSMC3, FNBP4, CELF1, SLC39A13, RAPSN	rs11039216-T	0.49	6E-9	(SAI QRST)	0.07	[0.048-0.092] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
946	chr11	47406591	47406592	rs11039216	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p11.2	intergenic	rs11039216-T	0.53134	5E-15		7.821	z score increase	Illumina [18485882] (imputed)	N
946	chr11	47409050	47409051	rs11500477	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs11500477-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
946	chr11	47410165	47410166	rs11821917	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11p11.2	NR	rs11821917-A	0.14	2E-8		0.0147	[0.0095-0.0199] unit decrease	NR [NR]	N
946	chr11	47410887	47410888	rs10838702	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p11.2	SPI1	rs10838702-T	0.3788	2E-15		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
946	chr11	47414868	47414869	rs78529890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs78529890-A	NR	4E-11		0.0507	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr11	47417182	47417183	rs10769263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11p11.2		rs10769263-?	NR	4E-10				NR [~ 8900000] (imputed)	N
946	chr11	47418100	47418101	rs769859741	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.2	RP11-750H9.5	rs769859741-A	0.0021	2E-6		0.5671	[0.33-0.8] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
946	chr11	47421627	47421628	rs530803857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs530803857-?	NR	5E-11				NR [~ 8900000] (imputed)	N
946	chr11	47421962	47421964	rs547171081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p11.2	RP11-750H9.5	rs547171081-C	0.514116	3E-11		0.015510655	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr11	47421962	47421964	rs547171081	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11p11.2	RP11-750H9.5	rs547171081-CGG	0.47	3E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
946	chr11	47422860	47422861	rs10838703	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	11p11.2	Intergenic	rs10838703-?	NR	8E-7		1.0638298	[1.04-1.09]	Affymetrix, Illumina [39235000] (imputed)	N
946	chr11	47423339	47423340	rs10769264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p11.2		rs10769264-T	NR	1E-16		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
946	chr11	47423339	47423340	rs10769264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p11.2		rs10769264-T	NR	2E-10		0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
946	chr11	47423920	47423921	rs10717830	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	11p11.2	SLC39A13	rs10717830-G	0.674	1E-10		6.422	[NR] z score increase	Affymetrix [14069427] (imputed)	N
946	chr11	47424863	47424864	rs61897429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11p11.2	RP11-750H9.5	rs61897429-A	0.143237	3E-31		0.03732543	[0.031-0.044] unit increase	Affymetrix [93095623] (imputed)	N
946	chr11	47427159	47427159	rs368770339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p11.2	RP11-750H9.5	rs368770339-CAG	0.142744	3E-13		0.02488035	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
946	chr11	47427666	47427667	rs61897431	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p11.2	SLC39A13	rs61897431-T	0.6472	1E-20		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
946	chr11	47427666	47427667	rs61897431	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11p11.2	SLC39A13	rs61897431-T	0.7184	4E-6		0.0035	[0.0019-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
946	chr11	47427666	47427667	rs61897431	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11p11.2	SLC39A13	rs61897431-C	0.35	3E-7		1.0465724	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
946	chr11	47427666	47427667	rs61897431	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11p11.2	SLC39A13	rs61897431-T	0.6472	2E-6		0.0041	[0.0023-0.0059] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
946	chr11	47427738	47427739	rs11039221	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11p11.2	CELF1, PTPMT1	rs11039221-T	0.307	9E-13		0.441	[0.25-0.64] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
946	chr11	47428209	47428210	rs68010938	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11p11.2	NR	rs68010938-T	NR	3E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
946	chr11	47429244	47429245	rs7107726	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11p11.2	NR	rs7107726-A	0.321	4E-18		0.016075108	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
946	chr11	47431702	47431703	rs61897432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs61897432-G	NR	9E-13		0.0255	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47431702	47431703	rs61897432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs61897432-G	NR	7E-13		0.0257	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
946	chr11	47434985	47434986	rs2293576	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	7,338 European, African American, South Asian and Hispanic ancestry cases, 225,258 European, African American, South Asian and Hispanic ancestry controls	NA	11p11.2	SPI1, SLC39A13, PSMC3, RAPSN	rs2293576-G	0.67	6E-10		1.14	[1.1-1.18]	Illumina [6922875] (imputed)	N
946	chr11	47434985	47434986	rs2293576	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	6,030 European ancestry cases, 248,929 European ancestry controls	NA	11p11.2	SPI1, SLC39A13, PSMC3, RAPSN	rs2293576-G	0.67	7E-10		1.14	[1.1-1.18]	Illumina [6932927] (imputed)	N
946	chr11	47434985	47434986	rs2293576	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	11p11.2	NDUFS3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, RP11-750H9.5, Y_RNA	rs2293576-A	NR	6E-9		5.83	[NR] z score increase	NR [16213998]	N
946	chr11	47434985	47434986	rs2293576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p11.2	SLC39A13	rs2293576-A	0.3271	9E-10	(EA)	0.0222	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr11	47434985	47434986	rs2293576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p11.2	SLC39A13	rs2293576-A	0.3271	2E-8	(EA, men)	0.0284	[0.018-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr11	47434985	47434986	rs2293576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p11.2	SLC39A13	rs2293576-A	0.3277	6E-6	(EA,women)	0.0223	[0.013-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr11	47434985	47434986	rs2293576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p11.2	SLC39A13	rs2293576-A	0.3277	2E-9	(EA)	0.0229	[0.015-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr11	47434985	47434986	rs2293576	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11p11.2	SLC39A13	rs2293576-A	0.3277	2E-6	(EA, men)	0.0251	[0.015-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr11	47438280	47438280	rs397743941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11p11.2		rs397743941-CT	NR	3E-21		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
946	chr11	47440757	47440758	rs2293579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11p11.2		rs2293579-A	0.25798	2E-10		0.0196958	[0.014-0.026] unit decrease	Illumina [13479924] (imputed)	N
946	chr11	47440757	47440758	rs2293579	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	PSMC3	rs2293579-?	NR	5E-13		0.0453465	NR unit decrease	Affymetrix [464137]	N
946	chr11	47440757	47440758	rs2293579	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	11p11.2	PSMC3	rs2293579-A	0.40	8E-8	(EA)	0.0093	[0.0060-0.0126] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
946	chr11	47440757	47440758	rs2293579	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	11p11.2	PSMC3	rs2293579-A	0.40	1E-7		0.0086	[0.0055-0.0117] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
946	chr11	47441334	47441335	rs7120413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	11p11.2		rs7120413-G	0.365761	4E-11		0.0227297	[0.016-0.029] unit increase	Illumina [13479178] (imputed)	N
946	chr11	47441471	47441472	rs3781627	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11p11.2	PSMC3	rs3781627-T	0.299038	3E-8		0.056455426	[0.037-0.076] unit increase	Affymetrix [7288503] (imputed)	N
946	chr11	47441471	47441472	rs3781627	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p11.2	NR	rs3781627-A	0.694086755463326	9E-11		0.00802266	[0.0056-0.0104] unit increase	NR [NR]	N
946	chr11	47441471	47441472	rs3781627	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p11.2	NR	rs3781627-A	0.694086755463326	5E-11		0.010487369	[0.0074-0.0136] unit increase	NR [NR]	N
946	chr11	47441471	47441472	rs3781627	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11p11.2	NR	rs3781627-A	0.694086755463326	2E-10		0.00852457	[0.0059-0.0112] unit increase	NR [NR]	N
946	chr11	47441471	47441472	rs3781627	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p11.2	NR	rs3781627-A	0.694086755463326	5E-11		0.0066751544	[0.0047-0.0087] unit increase	NR [NR]	N
946	chr11	47441512	47441513	rs10838708	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	11p11.2	PSMC3	rs10838708-A	0.4503	2E-8				Illumina [5508534] (imputed)	N
946	chr11	47441512	47441513	rs10838708	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	11p11.2	PSMC3	rs10838708-G	0.541245	2E-9		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
946	chr11	47441512	47441513	rs10838708	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	11p11.2	PSMC3	rs10838708-G	0.53	2E-9		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
946	chr11	47441663	47441664	rs2242511	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11p11.2	Intergenic	rs2242511-T	0.1321	4E-8		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
946	chr11	47443653	47443654	rs141325867	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs141325867-?	NR	3E-17		0.3796	[0.29-0.47] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
946	chr11	47447201	47447202	rs17790804	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11p11.2	PSMC3	rs17790804-?	NR	7E-30		0.033068676	[0.027-0.039] unit increase	Illumina [27896057] (imputed)	N
947	chr11	47449071	47449072	rs12292911	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11p11.2	NR	rs12292911-?	NR	4E-8				Affymetrix [7795605] (imputed)	N
947	chr11	47451622	47451623	rs9919526	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	PSMC3, RAPSN	rs9919526-C	0.713	6E-30		0.173	[0.14-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
947	chr11	47454151	47454152	rs4237543	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	11p11.2	PSMC3, RAPSN	rs4237543-?	NR	9E-9		0.0274	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
947	chr11	47454550	47454551	rs4434960	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	RAPSN	rs4434960-A	NR	3E-9		0.010378	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
947	chr11	47456066	47456067	rs111228939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11p11.2		rs111228939-C	NR	1E-12		0.0939	[0.068-0.12] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
947	chr11	47456866	47456867	rs79390637	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	11p11.2	PSMC3, RAPSN	rs79390637-?	NR	1E-19		0.13	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
947	chr11	47457538	47457539	rs11604680	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	11p11.2	RAPSN	rs11604680-G	0.32	2E-10		0.0174	[0.012-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
947	chr11	47457538	47457539	rs11604680	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11p11.2	RAPSN	rs11604680-A	0.6793	7E-17		0.019941581	[0.015-0.025] unit increase	Affymetrix [11514936] (imputed)	N
947	chr11	47457538	47457539	rs11604680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11p11.2	NR	rs11604680-G	0.321	4E-16		0.0115081	[0.0087-0.0143] unit decrease	NR [~ 9732723] (imputed)	N
947	chr11	47458069	47458070	rs10570981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11p11.2	RNU6-1302P, RAPSN	rs10570981-A	0.238259	3E-11		0.018821318	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr11	47460900	47460901	rs11039238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs11039238-T	0.67782	4E-18		0.0355279	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47460900	47460901	rs11039238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs11039238-T	0.67782	2E-16		0.0339647	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
947	chr11	47461692	47461693	rs7103835	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	11p11.2	RAPSN	rs7103835-A	0.31	3E-10				Illumina [5041948] (imputed)	N
947	chr11	47461782	47461783	rs7103648	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs7103648-A	NR	2E-11		6.686	z score decrease	Affymetrix [10847151] (imputed)	N
947	chr11	47461782	47461783	rs7103648	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p11.2	RAPSN, PSMC3, SLC39A13	rs7103648-G	0.382	3E-7	(EA, initial)	0.38	[0.23-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
947	chr11	47461782	47461783	rs7103648	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11p11.2	RAPSN, PSMC3, SLC39A13	rs7103648-G	0.382	7E-8	(EA, initial)	0.245	[0.16-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
947	chr11	47461782	47461783	rs7103648	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p11.2	RAPSN, PSMC3, SLC39A13	rs7103648-A	0.614	4E-13		0.3349	[0.24-0.43] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
947	chr11	47461782	47461783	rs7103648	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11p11.2	RAPSN, PSMC3, SLC39A13	rs7103648-A	0.614	9E-19		0.2409	[0.19-0.29] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
947	chr11	47462139	47462140	rs7104036	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	11p11.2	SLC39A13	rs7104036-G	0.3038	1E-11		6.787	NR z score decrease	Illumina [26237160] (imputed)	N
947	chr11	47462139	47462140	rs7104036	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs7104036-?	NR	3E-11		0.0158	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
947	chr11	47462139	47462140	rs7104036	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	ACP2	rs7104036-A	0.386605	2E-10		6.37	z score decrease	NR [10847151] (imputed)	N
947	chr11	47462139	47462140	rs7104036	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11p11.2	SPI1	rs7104036-A	0.386605	6E-11		6.55	z score decrease	NR [10847151] (imputed)	N
947	chr11	47467171	47467172	rs12577643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11p11.2		rs12577643-T	NR	2E-24		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
947	chr11	47467171	47467172	rs12577643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11p11.2	RAPSN	rs12577643-T	0.32593	3E-9		0.0141952755	[0.0095-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
947	chr11	47467171	47467172	rs12577643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs12577643-T	0.31084	4E-14				Affymetrix, Illumina [19872809] (imputed)	N
947	chr11	47468544	47468545	rs12419342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11p11.2		rs12419342-T	NR	6E-48		0.0196	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
947	chr11	47468544	47468545	rs12419342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11p11.2	RAPSN	rs12419342-C	NR	4E-9		0.02016	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
947	chr11	47468544	47468545	rs12419342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p11.2	RAPSN	rs12419342-C	NR	1E-10		0.021967	[0.015-0.029] unit increase	Affymetrix [127266] (imputed)	N
947	chr11	47468544	47468545	rs12419342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p11.2	RAPSN	rs12419342-C	NR	3E-8		0.0187347	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
947	chr11	47468544	47468545	rs12419342	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.2	RAPSN	rs12419342-T	0.7073	2E-6		0.0362	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr11	47468544	47468545	rs12419342	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	11p11.2	RAPSN	rs12419342-C	NR	5E-9		0.153	[0.10-0.20] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
947	chr11	47468568	47468569	rs3824867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11p11.2		rs3824867-G	NR	3E-19		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
947	chr11	47468568	47468569	rs3824867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11p11.2		rs3824867-G	NR	5E-15		0.0139	[0.01-0.017] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
947	chr11	47468568	47468569	rs3824867	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	11p11.2		rs3824867-A	0.290681	2E-18		0.0843008	[0.065-0.104] increase	Affymetrix [11014269] (imputed)	N
947	chr11	47468568	47468569	rs3824867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11p11.2	RAPSN	rs3824867-G	0.712099	2E-15		0.019338286	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr11	47468568	47468569	rs3824867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs3824867-A	0.296776	2E-14				Affymetrix, Illumina [22063850] (imputed)	N
947	chr11	47468568	47468569	rs3824867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11p11.2	NR	rs3824867-A	0.287818	4E-16		0.016887	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
947	chr11	47468568	47468569	rs3824867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p11.2		rs3824867-?	NR	4E-16				NR [~ 8900000] (imputed)	N
947	chr11	47468568	47468569	rs3824867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11p11.2	RAPSN	rs3824867-G	0.7112	5E-9		0.02278261	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr11	47468790	47468791	rs3740685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p11.2		rs3740685-T	NR	1E-17		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11p11.2	RAPSN	rs3740685-T	0.709457	4E-20		0.0255074	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11p11.2	RAPSN	rs3740685-T	0.709459	2E-21		0.023219768	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs3740685-T	0.677035	5E-34				Affymetrix, Illumina [24246363] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11p11.2	NR	rs3740685-T	0.709405	1E-32		0.023831	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs3740685-T	0.674651	1E-34				Affymetrix, Illumina [20825802] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11p11.2	NR	rs3740685-T	0.709045	2E-33		0.025582	[0.021-0.03] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
947	chr11	47468790	47468791	rs3740685	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	11p11.2	RAPSN	rs3740685-?	NA	6E-9		1.5	[0.99-2.01] unit increase	Affymetrix [5541230] (imputed)	N
947	chr11	47468790	47468791	rs3740685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11p11.2		rs3740685-?	NR	3E-13				NR [~ 8900000] (imputed)	N
947	chr11	47468790	47468791	rs3740685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p11.2		rs3740685-?	NR	8E-18				NR [~ 8900000] (imputed)	N
947	chr11	47469438	47469439	rs7111873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11p11.2		rs7111873-G	0.564998	2E-25		0.0211436	[0.017-0.025] unit decrease	Illumina [13479295] (imputed)	N
947	chr11	47469438	47469439	rs7111873	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	11p11.2	RAPSN	rs7111873-A	NR	4E-7		1.10572	[1.07-1.14]	Illumina [11610548] (imputed)	N
947	chr11	47469438	47469439	rs7111873	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11p11.2	RAPSN	rs7111873-A	NR	7E-21		0.0736	unit increase	Illumina [15409056] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	2E-11		0.026	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	6E-26		0.0408	[0.033-0.048] unit increase	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	3E-43		0.0557	[0.048-0.064] unit increase	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	8E-10		0.0238	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	6E-17		0.0324	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs34312154-A	NR	7E-23		0.0399	[0.032-0.048] unit increase	Affymetrix [9000000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11p11.2	NR	rs34312154-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
947	chr11	47470344	47470345	rs34312154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11p11.2		rs34312154-?	NR	5E-10				NR [~ 8900000] (imputed)	N
947	chr11	47474145	47474146	rs12361415	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	11p11.2	NR	rs12361415-T	0.706	3E-19		0.0168	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	5E-22		0.0372785	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	2E-19		0.0365287	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	1E-19		0.035346	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	1E-23		0.0386494	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	7E-21		0.036707	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	1E-22		0.0373258	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	2E-19		0.0358306	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	1E-19		0.0366278	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	9E-20		0.0362106	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	2E-23		0.0385629	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	4E-20		0.0364989	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11p11.2		rs35184771-G	0.647229	1E-20		0.0367121	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
947	chr11	47475188	47475189	rs35184771	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs35184771-?	NR	3E-10				NR [NR]	N
947	chr11	47475188	47475189	rs35184771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	11p11.2	NR	rs35184771-T	0.344339	1E-8		5.67	z score decrease	NR [10847151] (imputed)	N
947	chr11	47475674	47475675	rs60882887	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	11p11.2	NR	rs60882887-A	0.136868	2E-10	(adjusted)	0.82	NR	Illumina [9068301] (imputed)	N
947	chr11	47481532	47481533	rs7950696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11p11.2	intergenic	rs7950696-C	0.445	7E-14		0.02741704	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
947	chr11	47488114	47488114	rs555328608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p11.2		rs555328608-C	0.648965	4E-8		0.0238135	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
947	chr11	47488114	47488114	rs555328608	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11p11.2	CELF1	rs555328608-?	0.6733	1E-9		0.0183	[0.012-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
947	chr11	47504074	47504075	rs3740699	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p11.2	NR	rs3740699-?	NR	1E-9	(left pallidum)			NR [9227495] (imputed)	N
947	chr11	47523213	47523214	rs11039265	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	11p11.2	MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, NDUFS3, PTPMT1, KBTBD4, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160	rs11039265-?	NR	5E-9		0.0148289	[0.0098-0.0198] unit decrease	Affymetrix [25921788] (imputed)	N
947	chr11	47523213	47523214	rs11039265	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	11p11.2	CELF1	rs11039265-?	NR	5E-8		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
947	chr11	47527051	47527052	rs10838724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.2		rs10838724-G	0.631225	7E-14		0.0307932	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
947	chr11	47527051	47527052	rs10838724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11p11.2		rs10838724-G	0.631188	2E-16		0.0333767	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
947	chr11	47527051	47527052	rs10838724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11p11.2		rs10838724-G	0.631188	2E-15		0.0321729	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
947	chr11	47529946	47529947	rs7124681	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	11p11.2		rs7124681-A	0.41	5E-15		0.016	mmol/L increase	NR [NR] (imputed)	N
947	chr11	47529946	47529947	rs7124681	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11p11.2		rs7124681-A	0.41	2E-80				NR [NR] (imputed)	N
947	chr11	47529946	47529947	rs7124681	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11p11.2		rs7124681-A	0.41	2E-97		0.038	mmol/L decrease	NR [NR] (imputed)	N
947	chr11	47529946	47529947	rs7124681	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11p11.2		rs7124681-A	0.41	7E-50		0.022	% increase	NR [NR] (imputed)	N
947	chr11	47529946	47529947	rs7124681	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	11p11.2		rs7124681-A	0.41	7E-10		0.013	U/L decrease	NR [NR] (imputed)	N
947	chr11	47529946	47529947	rs7124681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11p11.2	CELF1	rs7124681-A	0.408189	2E-13		0.017846156	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr11	47529946	47529947	rs7124681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs7124681-A	0.383183	6E-39				Affymetrix, Illumina [24588908] (imputed)	N
947	chr11	47529946	47529947	rs7124681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11p11.2	NR	rs7124681-A	0.407766	4E-40		0.024684	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
947	chr11	47529946	47529947	rs7124681	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs7124681-?	NR	8E-10	(XXL_VLDL_P)	0.06592634	NR unit increase	Illumina [609262]	N
947	chr11	47529946	47529947	rs7124681	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs7124681-?	NR	8E-7	(XXL_VLDL_P)	0.06152123	NR unit increase	Illumina [609262]	N
947	chr11	47529946	47529947	rs7124681	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11p11.2	CELF1	rs7124681-A	0.408583	3E-17		0.055786	[0.043-0.069] unit increase	Affymetrix [9463307] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11p11.2		rs7124681-?	NR	1E-39				NR [~ 8900000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11p11.2	CELF1	rs7124681-A	0.4097	5E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11p11.2	NA	rs7124681-A	0.4162	4E-55		0.0257	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11p11.2	NA	rs7124681-A	0.4162	4E-55		0.0257	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11p11.2	NA	rs7124681-A	0.4162	4E-55		0.0257	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs7124681-C	NR	1E-19		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11p11.2	CELF1	rs7124681-A	0.4058	1E-10		0.0447	[0.031-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4117	4E-9	(EA)	0.0247	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4018	2E-8		0.0227	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-?	NR	7E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-?	NR	6E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-?	NR	5E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-?	NR	5E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-?	NR	2E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4117	8E-7	(EA, women)	0.024	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4117	7E-7	(EA, men)	0.028	[0.017-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4117	5E-12	(EA)	0.0262	[0.019-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4018	3E-7	(women)	0.0235	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4018	2E-6	(men)	0.025	[0.015-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	CUGBP1	rs7124681-A	0.4018	1E-11		0.0245	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr11	47529946	47529947	rs7124681	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p11.2	NR	rs7124681-A	0.409389443762275	3E-19		0.024504084	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr11	47530228	47530228	rs10690121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11p11.2		rs10690121-AAC	NR	2E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
947	chr11	47532394	47532395	rs11039266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11p11.2		rs11039266-?	NR	3E-17				NR [~ 8900000] (imputed)	N
947	chr11	47532394	47532395	rs11039266	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	11p11.2	CELF1	rs11039266-T	0.7219	3E-18		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
947	chr11	47534636	47534637	rs139689864	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	11p11.2		rs139689864-A	0.97	6E-11		0.1702	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
947	chr11	47539696	47539697	rs4752845	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs4752845-?	NR	5E-14	(L_HDL_PL)	0.08637759	NR unit decrease	Illumina [609262]	N
947	chr11	47539696	47539697	rs4752845	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs4752845-?	NR	5E-12	(ApoA1)	0.060518045	NR unit decrease	Illumina [609262]	N
947	chr11	47539696	47539697	rs4752845	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs4752845-?	NR	4E-13	(L_HDL_PL)	0.09016058	NR unit decrease	Illumina [609262]	N
947	chr11	47539696	47539697	rs4752845	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	CELF1	rs4752845-?	NR	2E-10	(ApoA1)	0.07806801	NR unit decrease	Illumina [609262]	N
947	chr11	47547045	47547046	rs34958982	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs34958982-?	NR	1E-8				NR [NR]	N
947	chr11	47547045	47547046	rs34958982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs34958982-?	NR	6E-53				NR [~ 8900000] (imputed)	N
947	chr11	47557159	47557160	rs61895110	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11p11.2	NR	rs61895110-A	0.0721	3E-8		0.0643	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
947	chr11	47557870	47557871	rs10838725	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	11p11.2	CELF1	rs10838725-?	NR	3E-6		1.07	[1.04-1.10]	Affymetrix [up to 7055881] (imputed)	N
947	chr11	47557870	47557871	rs10838725	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11p11.2	NR	rs10838725-?	NR	2E-6		1.0392507	[1.02288186365195- 1.05588153898494]	Affymetrix [7795605] (imputed)	N
947	chr11	47557870	47557871	rs10838725	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11p11.2	CELF1	rs10838725-C	0.316	1E-8		1.08	[1.05-1.11]	Illumina [7055881] (imputed)	N
947	chr11	47560210	47560211	rs80221606	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	11p11.2	NR	rs80221606-AT	0.103914	1E-10		0.76	NR	Illumina [9068301] (imputed)	N
947	chr11	47560432	47560433	rs61895112	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	11p11.2	CELF1	rs61895112-?	NR	3E-7		1.0752687	[1.05-1.1]	Affymetrix, Illumina [39235000] (imputed)	N
947	chr11	47562437	47562437	rs138263192	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11p11.2		rs138263192-A	0.854975	1E-8		0.0316511	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
947	chr11	47562437	47562437	rs138263192	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11p11.2		rs138263192-A	0.854975	4E-8		0.0301555	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
947	chr11	47566351	47566352	rs7928842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11p11.2		rs7928842-C	NR	1E-35		0.0243	[0.021-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
947	chr11	47568343	47568344	rs10838726	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	11p11.2	CELF1	rs10838726-C	0.698486	4E-18		0.9598273	NR	Affymetrix [~ 9600000] (imputed)	N
947	chr11	47570610	47570611	rs77173113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs77173113-G	NR	4E-15		0.0581	[0.044-0.073] unit increase	Affymetrix [9000000] (imputed)	N
947	chr11	47570610	47570611	rs77173113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs77173113-G	NR	3E-9		0.0441	[0.03-0.059] unit increase	Affymetrix [9000000] (imputed)	N
947	chr11	47571966	47571967	rs12225051	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	11p11.2	CELF1	rs12225051-T	0.28	7E-15		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
947	chr11	47575369	47575370	rs2868996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11p11.2		rs2868996-T	NR	6E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
947	chr11	47575369	47575370	rs2868996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11p11.2	CELF1	rs2868996-T	0.339436	8E-13		0.01719635	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
947	chr11	47575369	47575370	rs2868996	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	11p11.2	LRP4, NR1H3, RAPSN, NDUFS3, PTPMT1, KBTBD4, MTCH2, AC019330.1, AC133680.1	rs2868996-?	NR	9E-14		0.00914902	[0.0067-0.0116] unit decrease	Affymetrix [NR] (imputed)	N
947	chr11	47575369	47575370	rs2868996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11p11.2	CELF1	rs2868996-T	0.3381	5E-9		0.02202999	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr11	47581442	47581443	rs11039297	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11p11.2	CELF1, PTPMT1	rs11039297-?	NR	3E-10		0.02801	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	9E-10	(HDL_C)	0.06597665	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	4E-10	(HDL_D)	0.07258334	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	2E-13	(L_HDL_P)	0.08492881	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	1E-7	(XL_HDL_PL)	0.052401274	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	9E-10	(XL_HDL_PL)	0.07539828	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	7E-13	(L_HDL_P)	0.08900132	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	4E-9	(HDL_D)	0.07259156	NR unit decrease	Illumina [609262]	N
948	chr11	47583120	47583121	rs12798346	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	PTPMT1	rs12798346-?	NR	2E-7	(HDL_C)	0.07690128	NR unit decrease	Illumina [609262]	N
948	chr11	47587451	47587452	rs11537751	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11p11.2	PTPMT1	rs11537751-T	0.0475386828286292	4E-6		0.49258003	[0.28-0.7] unit increase	Illumina [247039]	N
948	chr11	47587451	47587452	rs11537751	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Hypertension	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	11p11.2	PTPMT1	rs11537751-T	0.048	7E-8		5.3932295	z score increase	Illumina [247039]	N
948	chr11	47598480	47598481	rs144915398	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs144915398-?	NR	1E-15		0.3844	[0.29-0.48] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
948	chr11	47600437	47600438	rs2280231	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11p11.2	BANK1, SLC39A8	rs2280231-?		6E-12				NR [7428630] (imputed)	N
948	chr11	47602878	47602879	rs75422278	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMX3	5,367 Icelandic ancestry individuals	NA	11p11.2		rs75422278-A	0.1425	1E-16		0.217776	[0.17-0.27] unit decrease	Illumina [7506463] (imputed)	N
948	chr11	47604638	47604639	rs12798028	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p11.2	NDUFS3	rs12798028-C	0.591453	1E-24		0.0145642	[0.012-0.017] unit decrease	Affymetrix [12370749]	N
948	chr11	47604638	47604639	rs12798028	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11p11.2	NDUFS3	rs12798028-C	0.591453	3E-27		0.0150337	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
948	chr11	47606482	47606483	rs11605348	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11p11.2	NR	rs11605348-G	0.6505	7E-13		1.0460252	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
948	chr11	47606482	47606483	rs11605348	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11p11.2	NA	rs11605348-G	0.657	3E-8	(Female)	1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
948	chr11	47606482	47606483	rs11605348	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	11p11.2	MADD, MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, PTPMT1, KBTBD4, NDUFS3, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160	rs11605348-G	0.649676	1E-8		0.012172433	[0.008-0.0164] unit increase	NR [NR] (imputed)	N
948	chr11	47606482	47606483	rs11605348	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	11p11.2	MADD, MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, PTPMT1, KBTBD4, NDUFS3, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160	rs11605348-G	0.65	1E-7		0.0045	[0.0029-0.0061] unit increase	NR [NR] (imputed)	N
948	chr11	47606482	47606483	rs11605348	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11p11.2	NR	rs11605348-A	NR	1E-8		5.735	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
948	chr11	47606482	47606483	rs11605348	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.2	NDUFS3	rs11605348-A	0.349	2E-8		0.0402	[0.026-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
948	chr11	47606864	47606865	rs12287076	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11p11.2	NA	rs12287076-C	0.625	4E-21		0.0192	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
948	chr11	47614574	47614575	rs11601694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11p11.2	C1QTNF4	rs11601694-T	0.044497	2E-14		0.041832265	[0.031-0.052] unit increase	Affymetrix [93095623] (imputed)	N
948	chr11	47614574	47614575	rs11601694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11p11.2	C1QTNF4	rs11601694-T	0.044505	9E-12		0.03717489	[0.027-0.048] unit increase	Affymetrix [93095623] (imputed)	N
948	chr11	47614574	47614575	rs11601694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11p11.2		rs11601694-?	NR	2E-9				NR [~ 8900000] (imputed)	N
948	chr11	47620968	47620969	rs78339356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs78339356-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
948	chr11	47622411	47622412	rs11039308	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p11.2		rs11039308-A	0.4083	5E-11		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
948	chr11	47623889	47623890	rs12363232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11p11.2		rs12363232-C	0.64974	8E-15		0.0317711	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
948	chr11	47623889	47623890	rs12363232	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11p11.2	NR	rs12363232-T	0.3491	4E-18		0.001991	[0.0015-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
948	chr11	47623889	47623890	rs12363232	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs12363232-?	NR	1E-29				Affymetrix [~ 8270000] (imputed)	N
948	chr11	47623889	47623890	rs12363232	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11p11.2	C1QTNF4	rs12363232-T	0.3496	1E-9		0.016407467	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
948	chr11	47625045	47625046	rs7123576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p11.2	NR	rs7123576-T	NR	5E-9		0.0378	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	6E-9		0.0141	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	4E-6	(females)	0.01563	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	7E-8	(males)	0.01882	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	2E-12	(females)	0.02358	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	1E-18		0.02139	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	5E-14		0.0183	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	3E-8	(males)	0.01524	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47626491	47626492	rs10769282	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11p11.2	C1QTNF4, CUGBP1, KBTBD4, NDUFS3, PSMC3, PTPMT1, RAPSN, SLC39A13	rs10769282-G	0.300022	2E-10	(females)	0.02082	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
948	chr11	47640428	47640429	rs1064608	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11p11.2	NR	rs1064608-G	0.353877	4E-10		0.041149627	[0.028-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
948	chr11	47640428	47640429	rs1064608	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11p11.2	Intergenic	rs1064608-C	0.3488	3E-10		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
948	chr11	47640428	47640429	rs1064608	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11p11.2	MTCH2, AGBL2, NUP160	rs1064608-C	0.3365	1E-31		0.0238	[0.02-0.028] unit increase	Illumina [246328]	N
948	chr11	47643890	47643891	rs3817335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.2		rs3817335-T	0.649481	1E-8		0.0240278	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
948	chr11	47643890	47643891	rs3817335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11p11.2		rs3817335-T	0.64945	3E-11		0.027965	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
948	chr11	47643890	47643891	rs3817335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11p11.2		rs3817335-T	0.64945	6E-10		0.0262264	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
948	chr11	47648041	47648042	rs4752856	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p11.2	NR	rs4752856-A	NR	1E-8		0.01424	[0.0094-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
948	chr11	47649617	47649618	rs17788853	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs17788853-A	NR	4E-9		0.0456	[0.03-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs3817334-C	NR	6E-20		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
948	chr11	47650992	47650993	rs3817334	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	MTCH2	rs3817334-T	NR	9E-10		6.132	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p11.2	MTCH2	rs3817334-T	0.42	1E-24		0.025	[0.021-0.029] unit increase	Illumina [6108953] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4106	7E-9	(EA)	0.0243	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4016	5E-6	(men)	0.0276	[0.016-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4007	3E-8		0.0224	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-?	NR	5E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-?	NR	1E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-?	NR	1E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4106	5E-12	(EA)	0.0258	[0.019-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4106	3E-6	(EA, women)	0.0225	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4106	1E-7	(EA, men)	0.0297	[0.019-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4007	3E-7	(men)	0.0269	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4007	2E-6	(women)	0.0216	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11p11.2	MTCH2	rs3817334-T	0.4007	1E-11		0.0241	[0.017-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	7E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	4E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	3E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	6E-6	(men)	0.0245	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	1E-8		0.0212	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	2E-6	(women)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	1E-7	(men)	0.0254	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11p11.2	MTCH2	rs3817334-T	0.3933	1E-11		0.0223	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	11p11.2	MTCH2	rs3817334-T	NR	2E-13	(additive model)	0.031	[0.023-0.039] unit increase	NR [9288881] (imputed)	N
948	chr11	47650992	47650993	rs3817334	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11p11.2	NR	rs3817334-T	0.407932176463293	1E-18		0.024106821	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
948	chr11	47650992	47650993	rs3817334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	MTCH2	rs3817334-T	0.409	2E-11	(EA, women)	0.027	[0.019-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr11	47650992	47650993	rs3817334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	MTCH2	rs3817334-T	0.407	5E-17	(EA)	0.026	[0.02-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr11	47650992	47650993	rs3817334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	MTCH2	rs3817334-T	0.405	2E-10	(EA, men)	0.026	[0.018-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr11	47650992	47650993	rs3817334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11p11.2	MTCH2	rs3817334-T	0.401	1E-17		0.026	[0.02-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
948	chr11	47650992	47650993	rs3817334	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	11p11.2	MTCH2, NDUFS3, CUGBP1	rs3817334-T	0.41	2E-12		0.06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
948	chr11	47658313	47658314	rs12794570	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p11.2	NR	rs12794570-C	0.353877	2E-14		0.0572217	[0.043-0.072] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
948	chr11	47659134	47659135	rs7118178	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11p11.2	MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CELF1, NDUFS3, PTPMT1, KBTBD4, FAM180B, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160	rs7118178-?		8E-9				NR [7428630] (imputed)	N
948	chr11	47662931	47662932	rs7120548	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11p11.2	NR	rs7120548-C	0.3023	2E-11				NR [9056863] (imputed)	N
948	chr11	47662931	47662932	rs7120548	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	MTCH2	rs7120548-?	NR	2E-11		0.0448821	NR unit decrease	Affymetrix [464137]	N
948	chr11	47663048	47663049	rs10838738	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11p11.2	MTCH2	rs10838738-?	0.35240000000000005	2E-9		1.03	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
948	chr11	47663048	47663049	rs10838738	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs10838738-?	NR	2E-10				NR [NR]	N
948	chr11	47663048	47663049	rs10838738	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11p11.2	MTCH2	rs10838738-?	NR	5E-10	(TG_PG)	0.06167221	NR unit increase	Illumina [609262]	N
948	chr11	47663048	47663049	rs10838738	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11p11.2	MTCH2	rs10838738-?	NR	4E-8	(TG_PG)	0.06766772	NR unit increase	Illumina [609262]	N
948	chr11	47663048	47663049	rs10838738	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	11p11.2	MTCH2	rs10838738-G	0.34	5E-9		0.07	[0.01-0.13] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
948	chr11	47665685	47665686	rs11039324	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	11p11.2	MTCH2	rs11039324-G	NR	4E-15		0.0100238	[0.0075-0.0125] unit increase	Affymetrix [10061374] (imputed)	N
948	chr11	47669174	47669175	rs59360790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs59360790-?	NR	8E-11	(male)	0.17158	[0.12-0.22] unit increase	Affymetrix [7794483] (imputed)	N
948	chr11	47669174	47669175	rs59360790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs59360790-?	NR	2E-7	(female)	0.18308	[0.11-0.25] unit increase	Affymetrix [7794483] (imputed)	N
948	chr11	47669174	47669175	rs59360790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs59360790-?	NR	1E-16		0.17754	[0.14-0.22] unit increase	Affymetrix [7794483] (imputed)	N
948	chr11	47669664	47669665	rs12787646	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	11p11.2	MTCH2	rs12787646-T	0.6548	2E-6		0.0081	[0.0048-0.0114] unit increase	Affymetrix [~ 7740000] (imputed)	N
948	chr11	47669860	47669861	rs113211479	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11p11.2	NR	rs113211479-A	0.4038	4E-22		0.024395151	[0.019-0.029] unit increase	Affymetrix [10549349] (imputed)	N
948	chr11	47676169	47676170	rs7107356	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11p11.2	NR	rs7107356-A	0.4952	5E-11				NR [9056863] (imputed)	N
948	chr11	47676169	47676170	rs7107356	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs7107356-?	NR	1E-9				NR [NR]	N
948	chr11	47676169	47676170	rs7107356	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs7107356-?	NR	9E-9				NR [NR]	N
948	chr11	47676169	47676170	rs7107356	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11p11.2		rs7107356-?	NR	4E-9				NR [NR]	N
948	chr11	47676169	47676170	rs7107356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11p11.2	AGBL2	rs7107356-G	0.506441	2E-18		0.019685738	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
948	chr11	47676169	47676170	rs7107356	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11p11.2	NR	rs7107356-A	0.4943	5E-12		0.01319	[0.0094-0.0169] unit decrease	NR [8968716] (imputed)	N
948	chr11	47676169	47676170	rs7107356	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p11.2	NR	rs7107356-?	NR	3E-10	(right pallidum)			NR [9227495] (imputed)	N
948	chr11	47676169	47676170	rs7107356	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	AGBL2	rs7107356-A	NR	1E-10		0.011223	[0.0078-0.0146] unit increase	Affymetrix [18485882] (imputed)	N
948	chr11	47676169	47676170	rs7107356	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11p11.2	NR	rs7107356-G	0.507241265609637	2E-14		0.0070112045	[0.0052-0.0088] unit increase	NR [NR]	N
948	chr11	47676169	47676170	rs7107356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.2		rs7107356-?	NR	6E-54				NR [~ 8900000] (imputed)	N
948	chr11	47676169	47676170	rs7107356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11p11.2		rs7107356-?	NR	1E-11				NR [~ 8900000] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs7107356-A	NR	2E-14		7.643	z score decrease	Affymetrix [10847151] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs7107356-?	NR	2E-13		0.01703	[0.013-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	NR1H3	rs7107356-A	0.495007	3E-12		6.97	z score decrease	NR [10847151] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p11.2	NR1H3	rs7107356-A	0.495007	4E-11		6.61	z score decrease	NR [10847151] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11p11.2	MYBPC3	rs7107356-A	0.495007	1E-8		5.67	z score decrease	NR [10847151] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	11p11.2	NR	rs7107356-G	0.5067	7E-9		0.0161	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11p11.2	NR	rs7107356-G	0.5067	3E-7		0.0175	[0.011-0.024] unit increase	Illumina [NR] (imputed)	N
948	chr11	47676169	47676170	rs7107356	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p11.2	ACP2, AGBL2, C1QTNF4, CELF1, DDB2, FAM180B, FNBP4, KBTBD4, MADD, MTCH2, MYBPC3, NDUFS3, NR1H3, NUP160, PSMC3, PTPMT1, RAPSN, SLC39A13, SPI1	rs7107356-A	0.49500999999999995	1E-16		8.305	z score decrease	Illumina [18485882] (imputed)	N
948	chr11	47676169	47676170	rs7107356	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p11.2	MTCH2, AGBL2	rs7107356-A		9E-7		0.265	unit decrease	Affymetrix [at least 2696785] (imputed)	N
948	chr11	47676169	47676170	rs7107356	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.2	MTCH2, AGBL2	rs7107356-A		4E-16		0.309	unit decrease	Affymetrix [at least 2696785] (imputed)	N
948	chr11	47676169	47676170	rs7107356	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.2	MTCH2, AGBL2	rs7107356-A		3E-10		0.159	unit decrease	Affymetrix [at least 2696785] (imputed)	N
948	chr11	47676169	47676170	rs7107356	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.2	MTCH2, AGBL2	rs7107356-A		2E-10		0.149	unit decrease	Affymetrix [at least 2696785] (imputed)	N
948	chr11	47676169	47676170	rs7107356	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11p11.2	NR	rs7107356-A	0.513	1E-7		0.018081715	[0.011-0.025] unit decrease	Affymetrix [up to 6544775] (imputed)	N
948	chr11	47681369	47681370	rs1056387	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	11p11.2	AGBL2	rs1056387-G	0.450353	4E-8		0.064100824	[0.041-0.087] unit decrease	Affymetrix [7288503] (imputed)	N
948	chr11	47682724	47682725	rs60515486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11p11.2		rs60515486-T	NR	4E-33		0.0353	[0.03-0.041] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
948	chr11	47682724	47682725	rs60515486	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	11p11.2	AGBL2	rs60515486-A	NR	3E-8		0.901496	[0.87-0.94]	Illumina [NR] (imputed)	N
948	chr11	47682724	47682725	rs60515486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11p11.2	AGBL2	rs60515486-T	0.2027	8E-18		0.0384353	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
948	chr11	47687146	47687147	rs12787112	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	11p11.2	ACP2	rs12787112-A	0.340851	4E-16		8.13	z score increase	NR [10847151] (imputed)	N
948	chr11	47695839	47695840	rs11039332	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	11p11.2	AGBL2	rs11039332-?	NR	8E-7		1.0752687	[1.05-1.1]	Affymetrix, Illumina [39235000] (imputed)	N
948	chr11	47696595	47696596	rs12365079	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p11.2	NR	rs12365079-?	NR	5E-9	(right pallidum)			NR [9227495] (imputed)	N
948	chr11	47699882	47699883	rs10128705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11p11.2		rs10128705-C	NR	3E-14		0.0201	[0.015-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
948	chr11	47701527	47701528	rs12286721	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11p11.2	NR	rs12286721-A	0.5694	2E-6		0.131	mmHg decrease	Illumina [242296]	N
948	chr11	47702394	47702395	rs7120737	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11p11.2	AGBL2	rs7120737-G	0.15	1E-9		1.1		Illumina [161311]	N
948	chr11	47703310	47703311	rs79408863	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11p11.2	AGBL2	rs79408863-?		7E-6				Illumina [4322238] (imputed)	N
949	chr11	47722570	47722571	rs143001834	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11p11.2	AGBL2	rs143001834-G	0.941119	2E-11		0.00544034	[0.0038-0.0071] unit decrease	Affymetrix [13995440] (imputed)	N
949	chr11	47722818	47722819	rs7935528	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11p11.2	AGBL2	rs7935528-A	0.4507	5E-14		0.0077	[0.0057-0.0097] unit increase	Affymetrix [~ 7740000] (imputed)	N
949	chr11	47723511	47723512	rs11823949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs11823949-A	0.336694	2E-19				Affymetrix, Illumina [23114412] (imputed)	N
949	chr11	47723511	47723512	rs11823949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11p11.2	NR	rs11823949-A	0.347387	2E-20		0.019238	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
949	chr11	47728616	47728617	rs11039348	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11p11.2	NR	rs11039348-A	0.346	2E-7		0.00596957	[0.0037-0.0082] unit decrease	NR [9732723] (imputed)	N
949	chr11	47728923	47728924	rs4303192	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	11p11.2	AGBL2	rs4303192-T	NR	9E-9		1.13122	[1.09-1.17]	Illumina [11610548] (imputed)	N
949	chr11	47733493	47733494	rs1017730	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11p11.2	NR	rs1017730-A	NR	6E-9		0.01601	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
949	chr11	47737500	47737501	rs11039355	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	11p11.2	FNBP4	rs11039355-T	0.34	8E-11		0.039	[0.027-0.051] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
949	chr11	47737548	47737549	rs111867185	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	11p11.2	FNBP4	rs111867185-T	0.133232	1E-8		0.16818085	[0.11-0.23] unit increase	Affymetrix [7288503] (imputed)	N
949	chr11	47748018	47748019	rs11605681	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11p11.2		rs11605681-A	0.05632	1E-8		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
949	chr11	47752774	47752775	rs17788930	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11p11.2		rs17788930-A	0.6814	5E-9		0.0068	[0.0044-0.0092] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
949	chr11	47760077	47760078	rs12807014	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	11p11.2	FNBP4	rs12807014-C	0.274	3E-13		0.029	[0.036-0.021] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
949	chr11	47761470	47761471	rs11602339	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11p11.2	FNBP4	rs11602339-T	0.313	1E-9	(Japanese)	0.023	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
949	chr11	47769563	47769564	rs34923397	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	NR	rs34923397-?	NR	5E-8		5.449	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
949	chr11	47769619	47769620	rs11039364	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	11p11.2	FNBP4	rs11039364-T	NR	3E-9		0.007	[0.005-0.009] unit increase	NR [16213998]	N
949	chr11	47772128	47772129	rs185630440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p11.2	NR	rs185630440-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
949	chr11	47773935	47773936	rs187255127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs187255127-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
949	chr11	47775761	47775764	rs540739941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11p11.2		rs540739941-G	NR	4E-10		0.0302	[0.021-0.04] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
949	chr11	47781305	47781306	rs7927771	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11p11.2	NR	rs7927771-A	0.6579	4E-6		0.0129	[0.0074-0.0184] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
949	chr11	47783613	47783614	rs150341456	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs150341456-?	NR	2E-15		0.3558	[0.27-0.44] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
949	chr11	47795442	47795443	rs200959874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11p11.2	NUP160	rs200959874-C	0.438899	2E-9		0.013787658	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
949	chr11	47796061	47796062	rs11039389	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs11039389-T	NR	7E-11		6.519	z score increase	Affymetrix [10847151] (imputed)	N
949	chr11	47796061	47796062	rs11039389	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	DDB2	rs11039389-T	0.341432	4E-10		6.27	z score increase	NR [10847151] (imputed)	N
949	chr11	47796061	47796062	rs11039389	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	11p11.2	DDB2	rs11039389-T	0.341432	2E-9		5.97	z score increase	NR [10847151] (imputed)	N
949	chr11	47796061	47796062	rs11039389	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p11.2	intergenic	rs11039389-T	0.65857	1E-11		6.781	z score increase	Illumina [18485882] (imputed)	N
949	chr11	47796661	47796662	rs11039391	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	11p11.2	NR	rs11039391-A	0.339514	1E-15		7.98	z score decrease	NR [10847151] (imputed)	N
949	chr11	47796771	47796772	rs200526320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11p11.2		rs200526320-G	0.822743	3E-8		0.0348934	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
949	chr11	47799230	47799230	rs574820692	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11p11.2	NUP160	rs574820692-AT	0.3298	1E-9		0.02466702	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
949	chr11	47807773	47807774	rs2290850	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11p11.2	NR	rs2290850-C	0.3482479222397	2E-11		0.008333924	[0.0059-0.0108] unit decrease	NR [NR]	N
949	chr11	47807773	47807774	rs2290850	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11p11.2	NR	rs2290850-C	0.3482479222397	1E-11		0.011033266	[0.0078-0.0142] unit decrease	NR [NR]	N
949	chr11	47807773	47807774	rs2290850	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11p11.2	NR	rs2290850-C	0.3482479222397	1E-10		0.008952587	[0.0062-0.0117] unit decrease	NR [NR]	N
949	chr11	47807773	47807774	rs2290850	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11p11.2	NR	rs2290850-C	0.3482479222397	3E-11		0.0068925936	[0.0049-0.0089] unit decrease	NR [NR]	N
949	chr11	47811496	47811497	rs34563280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11p11.2	NUP160	rs34563280-C	0.4355	2E-12		0.02640469	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
949	chr11	47822230	47822231	rs548825905	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs548825905-?	NR	3E-14		0.0927925	[0.067-0.119] unit decrease	Affymetrix [20259828] (imputed)	N
949	chr11	47835720	47835721	rs11039409	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs11039409-?	NR	9E-10		0.01574	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
949	chr11	47835720	47835721	rs11039409	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11p11.2	PTPRJ	rs11039409-A	0.289306	3E-8		5.55	z score decrease	NR [10847151] (imputed)	N
949	chr11	47836301	47836302	rs7131262	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	11p11.2	NUP160	rs7131262-?	NR	3E-7		1.0752687	[1.05-1.1]	Affymetrix, Illumina [39235000] (imputed)	N
949	chr11	47836301	47836302	rs7131262	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs7131262-A	NR	1E-9		6.063	z score increase	Affymetrix [10847151] (imputed)	N
949	chr11	47840864	47840864	rs769730811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11p11.2		rs769730811-C	0.676606	4E-11		0.0291525	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
949	chr11	47840864	47840864	rs769730811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11p11.2		rs769730811-C	0.676606	2E-10		0.0280586	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
950	chr11	47857252	47857253	rs3816605	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p11.2	NR	rs3816605-C	0.4355	9E-14		0.0318	[0.023-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
950	chr11	47857252	47857253	rs3816605	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11p11.2	NR	rs3816605-T	NR	4E-16		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
950	chr11	47860745	47860746	rs79145982	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	NUP160	rs79145982-T	0.1769	3E-11		0.2319	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
950	chr11	47871367	47871368	rs113945456	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	NR	rs113945456-?	NR	1E-7		5.256	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
950	chr11	47883336	47883337	rs7934481	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11p11.2	NR	rs7934481-?	NR	1E-9	(left pallidum)			NR [9227495] (imputed)	N
950	chr11	47888035	47888036	rs11039436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11p11.2		rs11039436-C	NR	1E-9		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
950	chr11	47888035	47888036	rs11039436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11p11.2		rs11039436-C	NR	5E-10		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
950	chr11	47888035	47888036	rs11039436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs11039436-C	0.616853	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
950	chr11	47888035	47888036	rs11039436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11p11.2	NR	rs11039436-C	0.674325	1E-13		0.016254	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
950	chr11	47888035	47888036	rs11039436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs11039436-C	0.617703	5E-12				Affymetrix, Illumina [24558453] (imputed)	N
950	chr11	47888035	47888036	rs11039436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11p11.2	NR	rs11039436-C	0.674336	1E-13		0.016342	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
950	chr11	47888035	47888036	rs11039436	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11p11.2	intergenic	rs11039436-C	0.6683	2E-11		0.02713706	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47888035	47888036	rs11039436	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11p11.2	intergenic	rs11039436-C	0.6681	4E-9		0.02339092	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47888713	47888714	rs113964990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	11p11.2		rs113964990-T	NR	3E-8		0.1641	[0.11-0.22] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
950	chr11	47898534	47898535	rs4752881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11p11.2		rs4752881-A	0.654	6E-30				Affymetrix [10369434] (imputed)	N
950	chr11	47898534	47898535	rs4752881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	11p11.2		rs4752881-A	0.654	3E-8				Affymetrix [10369434] (imputed)	N
950	chr11	47901268	47901269	rs1872167	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	NR	rs1872167-?	NR	9E-10		0.05387594	NR unit increase	Affymetrix [464137]	N
950	chr11	47902882	47902883	rs12364432	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11p11.2	NR	rs12364432-G	0.358847	8E-10		0.04019394	[0.027-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
950	chr11	47902882	47902883	rs12364432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11p11.2		rs12364432-?	NR	1E-28				NR [~ 8900000] (imputed)	N
950	chr11	47902882	47902883	rs12364432	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	11p11.2	NR	rs12364432-A	0.339413	4E-9		5.87	z score decrease	NR [10847151] (imputed)	N
950	chr11	47907349	47907350	rs59652089	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	NUP160	rs59652089-T	0.1735	2E-17		0.4044	[0.31-0.5] mmHg decrease	Affymetrix [NR] (imputed)	N
950	chr11	47907640	47907641	rs4752801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11p11.2		rs4752801-G	NR	2E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
950	chr11	47907640	47907641	rs4752801	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11p11.2	DDB2	rs4752801-A	0.361005	6E-10		6.19	z score increase	NR [10847151] (imputed)	N
950	chr11	47913676	47913677	rs141016381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.2		rs141016381-?	NR	1E-10				NR [~ 8900000] (imputed)	N
950	chr11	47914957	47914958	rs78239375	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.2	NR	rs78239375-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
950	chr11	47915298	47915299	rs34467936	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11p11.2	NUP160	rs34467936-A	0.638612	7E-13		0.00172315	[0.0012-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
950	chr11	47915298	47915299	rs34467936	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11p11.2	NUP160, PTPRJ	rs34467936-A	0.64	1E-11		6.78	z-score increase	Affymetrix [4311822] (imputed)	N
950	chr11	47915298	47915299	rs34467936	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11p11.2	NUP160, PTPRJ	rs34467936-A	0.64	2E-15		7.97	z-score increase	Affymetrix [4314223] (imputed)	N
950	chr11	47915298	47915299	rs34467936	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p11.2	NR	rs34467936-A	0.377734	7E-13		0.052681707	[0.038-0.067] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
950	chr11	47915298	47915299	rs34467936	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11p11.2	ENSG00000254780	rs34467936-A	NR	1E-8		0.0098816	[0.0065-0.0133] unit decrease	Affymetrix [18485882] (imputed)	N
950	chr11	47915298	47915299	rs34467936	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs34467936-?	NR	4E-11		0.01605	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
950	chr11	47915298	47915299	rs34467936	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	11p11.2	NR	rs34467936-A	0.35405	1E-15		8.01	z score increase	NR [10847151] (imputed)	N
950	chr11	47915298	47915299	rs34467936	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11p11.2	NR	rs34467936-A	0.35405	4E-10		6.24	z score increase	NR [10847151] (imputed)	N
950	chr11	47918361	47918362	rs58405523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11p11.2		rs58405523-T	NR	6E-20		0.0277	[0.022-0.034] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
950	chr11	47918415	47918416	rs11039448	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11p11.2	NR	rs11039448-T	0.5582	8E-13		0.014937313	[0.011-0.019] unit decrease	Affymetrix [10613246] (imputed)	N
950	chr11	47920992	47920993	rs141237278	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs141237278-?	NR	1E-14		0.321	[0.24-0.4] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
950	chr11	47921104	47921105	rs34814128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs34814128-A	NR	1E-9		0.0301	[0.02-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
950	chr11	47921104	47921105	rs34814128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11p11.2	NR	rs34814128-A	NR	5E-12		0.0347	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
950	chr11	47932665	47932666	rs12802244	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11p11.2	NA	rs12802244-G		6E-10		0.0117324	[0.008-0.0155] unit increase	Illumina [13288253] (imputed)	N
950	chr11	47932665	47932666	rs12802244	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11p11.2	intergenic	rs12802244-A	0.36027	2E-11		6.708	z score decrease	Illumina [18485882] (imputed)	N
950	chr11	47933609	47933609	rs144562710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11p11.2		rs144562710-AAT	NR	2E-21		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
950	chr11	47933663	47933664	rs117333334	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11p11.2	NUP160, PTPRJ	rs117333334-A	0.056	9E-9		5.75	z-score increase	Affymetrix [4312306] (imputed)	N
950	chr11	47940924	47940925	rs747782	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	11p11.2	NUP160, PTPRJ	rs747782-?	NR	2E-7		0.1	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
950	chr11	47940924	47940925	rs747782	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	11p11.2	NUP160, AGBL2, PTPRJ, SPI1	rs747782-C	NR	1E-11		0.203	[0.14-0.26] mm Hg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
950	chr11	47943418	47943419	rs10838791	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11p11.2	RP11-793I11.1	rs10838791-T	0.2864	7E-6		0.0342	[0.019-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
950	chr11	47946835	47946836	rs2930191	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	11p11.2		rs2930191-A	0.3722	5E-13		0.035	unit decrease	Illumina [28300000] (imputed)	N
950	chr11	47947657	47947658	rs7927682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs7927682-C	0.214058	1E-50				Affymetrix, Illumina [23472807] (imputed)	N
950	chr11	47949368	47949391	rs552557467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11p11.2		rs552557467-C	0.670598	3E-18		0.021453084	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
950	chr11	47949368	47949391	rs552557467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11p11.2	intergenic	rs552557467-C	0.6721	1E-9		0.02441041	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47949368	47949391	rs552557467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11p11.2	intergenic	rs552557467-C	0.672	2E-9		0.02413035	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47949368	47949391	rs552557467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11p11.2	intergenic	rs552557467-C	0.672	3E-9		0.02390094	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47949368	47949391	rs552557467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11p11.2	intergenic	rs552557467-C	0.672	3E-9		0.0240135	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47949368	47949391	rs552557467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11p11.2	intergenic	rs552557467-C	0.672	9E-10		0.02467009	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr11	47951352	47951353	rs1228024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11p11.2		rs1228024-A	NR	4E-12		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
950	chr11	47951352	47951353	rs1228024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11p11.2	RP11-793I11.1	rs1228024-C	NR	3E-8		0.0182152	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
950	chr11	47951352	47951353	rs1228024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11p11.2	RP11-793I11.1	rs1228024-C	NR	2E-8		0.0183642	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
950	chr11	47951352	47951353	rs1228024	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	11p11.2	PTPRJ	rs1228024-C	0.340021	1E-8		0.013965	[0.0092-0.0188] unit increase	Affymetrix [19400838] (imputed)	N
950	chr11	47951352	47951353	rs1228024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11p11.2	NR	rs1228024-A	0.661308	2E-38		0.025191	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
950	chr11	47951352	47951353	rs1228024	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs1228024-?	NR	1E-9	(female)	0.15549	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
950	chr11	47951352	47951353	rs1228024	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11p11.2	NR	rs1228024-?	NR	1E-6		0.11374	[0.068-0.159] unit decrease	Affymetrix [7794483] (imputed)	N
950	chr11	47955607	47955608	rs7944735	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	11p11.2	genic	rs7944735-C	NR	6E-11		0.19	[0.13-0.25] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
950	chr11	47955607	47955608	rs7944735	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	11p11.2	genic	rs7944735-C	NR	1E-9	(EA)	0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
950	chr11	47960209	47960210	rs1227995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs1227995-T	0.656352	7E-43				Affymetrix, Illumina [24649327] (imputed)	N
950	chr11	47960920	47960921	rs112971726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.2		rs112971726-?	NR	4E-10				NR [~ 8900000] (imputed)	N
950	chr11	47965188	47965189	rs1227996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11p11.2		rs1227996-G	NR	2E-31		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
950	chr11	47965188	47965189	rs1227996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11p11.2	NR	rs1227996-G	0.661137	8E-32		0.027472762	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
950	chr11	47965188	47965189	rs1227996	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	NUP160, PTPRJ	rs1227996-C	0.3398	2E-30		0.1636	[0.13-0.19] unit increase	Affymetrix [~ 11900000] (imputed)	N
950	chr11	47969151	47969152	rs1681630	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	11p11.2	PTPRJ	rs1681630-T	0.34	2E-20		0.029	[0.023-0.035] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
951	chr11	47974372	47974373	rs1631174	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	11p11.2		rs1631174-A	0.3402	7E-9		1.0395626	[1.026000507-1.053303861]	Affymetrix, Illumina [NR] (imputed)	N
951	chr11	47980567	47980568	rs7939345	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	11p11.2	NDUFS3, PSMC3, PTPRJ, RAPSN, CELF1, NUP160, FNBP4, MTCH2, KBTBD4, AGBL2, C1QTNF4	rs7939345-T	NR	4E-8		1.036		NR [14661600] (imputed)	N
951	chr11	47980567	47980568	rs7939345	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11p11.2	NR	rs7939345-T	NR	8E-10		6.144	z score increase	Affymetrix [10847151] (imputed)	N
951	chr11	47980567	47980568	rs7939345	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.2	NR	rs7939345-?	NR	9E-11		0.01846	[0.013-0.024] unit increase	Affymetrix [10847151] (imputed)	N
951	chr11	47995214	47995215	rs185821266	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	11p11.2	NR	rs185821266-G		9E-6		0.3168	[0.17-0.46] SD units increase	NR [10700000] (imputed)	N
951	chr11	47998819	47998820	rs55724440	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	11p11.2		rs55724440-C	0.06457	7E-6		1.792	[1.39-2.31]	Affymetrix [7975321] (imputed)	N
951	chr11	47998921	47998922	rs56319620	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11p11.2	PTPRJ	rs56319620-C	0.8	6E-23				Affymetrix, Illumina [8002429] (imputed)	N
951	chr11	47999217	47999218	rs1017875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11p11.2	NR	rs1017875-T	0.201673	5E-53		0.036085	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
951	chr11	48011179	48011180	rs1228044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11p11.2	PTPRJ	rs1228044-G	0.252448	2E-19		0.023151277	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr11	48011179	48011180	rs1228044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11p11.2	PTPRJ	rs1228044-G	0.252501	5E-18		0.02233033	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr11	48013483	48013484	rs7123436	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11p11.2	NR	rs7123436-A		9E-15		0.14	[0.1-0.18] unit increase	NR [NR]	N
951	chr11	48013483	48013484	rs7123436	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11p11.2	PTPRJ	rs7123436-?	NR	4E-23		0.1574	[0.13-0.19] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
951	chr11	48013483	48013484	rs7123436	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11p11.2	PTPRJ	rs7123436-G	0.797	1E-27		0.172	[0.14-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
951	chr11	48018354	48018355	rs4752805	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	PTPRJ	rs4752805-A	0.7464	1E-22		0.152	[0.12-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
951	chr11	48024505	48024506	rs5791797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11p11.2	PTPRJ	rs5791797-G	0.203476	5E-43		0.038364373	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
951	chr11	48025673	48025674	rs79680178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs79680178-T	NR	2E-9		0.0445	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
951	chr11	48046367	48046368	rs78730126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11p11.2	NR	rs78730126-T	NR	1E-9		0.0286	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
951	chr11	48050994	48050995	rs7130876	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	11p11.2		rs7130876-A	0.799	5E-25				Affymetrix [10369434] (imputed)	N
951	chr11	48051441	48051442	rs6485802	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11p11.2		rs6485802-A	0.710404	2E-9		0.0265081	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
951	chr11	48052065	48052066	rs117784795	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs117784795-?	NR	2E-15		0.3548	[0.27-0.44] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
951	chr11	48064193	48064194	rs138315285	24357727	Rocanin-Arjo A	2013-12-19	Blood	A meta-analysis of genome-wide association studies identifies ORM1 as a novel gene controlling thrombin generation potential.	Thrombin generation potential phenotypes	714 European ancestry venous thrombosis cases, 1,253 European ancestry individuals	714 European ancestry venous thrombosis cases, 543 European ancestry individuals	11p11.2	NR	rs138315285-A	NR	6E-11	(Peak)	35.81	[25.11-46.51] nM increase	NR [6652054] (imputed)	N
951	chr11	48078426	48078427	rs7118665	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.2	PTPRJ	rs7118665-A	0.311	1E-6		0.0338	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
951	chr11	48078796	48078797	rs77082299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs77082299-A	NR	3E-12		0.0543	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
951	chr11	48078845	48078846	rs72899741	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11p11.2	NR	rs72899741-?	NR	3E-6		4.661	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
951	chr11	48079703	48079704	rs12289583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11p11.2	PTPRJ	rs12289583-T	0.045526	2E-15		0.04304162	[0.032-0.054] unit increase	Affymetrix [93095623] (imputed)	N
951	chr11	48081251	48081252	rs1569171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.2	NR	rs1569171-G	0.949352	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
951	chr11	48091302	48091303	rs10838798	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	11p11.2	PTPRJ	rs10838798-T	0.31	7E-12		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
951	chr11	48093355	48093356	rs185393137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p11.2		rs185393137-?	NR	1E-7				NR [~ 8900000] (imputed)	N
951	chr11	48098279	48098280	rs10838801	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p11.2	PTPRJ/SLC39A13	rs10838801-A	0.69	4E-12		0.027	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
951	chr11	48098495	48098496	rs7117516	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11p11.2	PTPRJ	rs7117516-T	0.140605	4E-12		0.0185212	[0.013-0.024] unit decrease	NR [13737936] (imputed)	N
951	chr11	48098495	48098496	rs7117516	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.2		rs7117516-?	NR	8E-17				NR [~ 8900000] (imputed)	N
951	chr11	48098495	48098496	rs7117516	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.2		rs7117516-?	NR	1E-12		0.0215687	[0.016-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
951	chr11	48100836	48100837	rs7396592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11p11.2	NR	rs7396592-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
952	chr11	48110602	48110602	rs397713867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11p11.2		rs397713867-CG	0.605627	5E-10		0.0204065	[0.014-0.027] unit increase	Illumina [13478778] (imputed)	N
952	chr11	48115088	48115089	rs3942852	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	PTPRJ	rs3942852-?	NR	2E-9		0.04496659	NR unit increase	Affymetrix [464137]	N
952	chr11	48115088	48115089	rs3942852	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	11p11.2	PTPRJ	rs3942852-T	0.78	1E-6	(ETV6-RUNX1 positive)	1.2987013	[1.12-1.47]	Affymetrix [355750]	N
952	chr11	48115088	48115089	rs3942852	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	11p11.2	PTPRJ	rs3942852-C	0.22	5E-7	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
952	chr11	48133525	48133526	rs1875696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11p11.2		rs1875696-A	NR	7E-17		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
952	chr11	48133525	48133526	rs1875696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11p11.2		rs1875696-A	NR	6E-14		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
952	chr11	48137501	48137502	rs7947874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11p11.2	PTPRJ	rs7947874-A	0.059107	1E-14		0.036712732	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
952	chr11	48137501	48137502	rs7947874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11p11.2	PTPRJ	rs7947874-A	0.059111	1E-11		0.032246027	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
952	chr11	48148449	48148450	rs12574500	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p11.2	PTPRJ	rs12574500-A	0.891875	8E-7	(PTPRJ, 8250_2_3)	0.19878611	[0.12-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
952	chr11	48151286	48151287	rs11607114	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11p11.2	NR	rs11607114-C	0.844464	4E-10		0.0252391	[0.017-0.033] unit increase	Affymetrix [16577313] (imputed)	N
952	chr11	48160428	48160429	rs10734564	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11p11.2	PTPRJ	rs10734564-A	0.17922	4E-11		0.027112	[0.019-0.035] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
952	chr11	48162452	48162453	rs11602180	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11p11.2	NR	rs11602180-C	NR	6E-8		0.918	unit increase	Affymetrix [14661600] (imputed)	N
952	chr11	48170580	48170581	rs4752907	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11p11.2	NR	rs4752907-G	0.429423	2E-8		0.040148847	[0.026-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
952	chr11	48174011	48174012	rs10838809	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11p11.2	NR	rs10838809-?	NR	3E-6	(Japanese)	0.3947	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
952	chr11	48177394	48177395	rs151078858	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	11p11.2	PTPRJ	rs151078858-T	0.002637	3E-7		8.116	3.134-21.01	Illumina [164395]	N
952	chr11	48183185	48183186	rs76757809	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	11p11.2	PTPRJ	rs76757809-G	0.136	2E-9		0.236	[0.16-0.31] mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
952	chr11	48207258	48207259	rs11039571	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	PTPRJ	rs11039571-G	0.131	9E-6		0.039	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
952	chr11	48211756	48211757	rs182484222	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs182484222-?	NR	5E-12		0.4366	[0.31-0.56] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
953	chr11	48246456	48246457	rs10838835	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	11p11.2	OR4B1, OR4X2	rs10838835-?	NR	1E-8				NR [~ 24000000] (imputed)	N
953	chr11	48250674	48250675	rs7127946	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p11.2	OR4B1	rs7127946-T	0.6948	5E-13		0.0023	[0.0017-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
953	chr11	48250674	48250675	rs7127946	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11p11.2	OR4B1	rs7127946-T	0.7159	5E-10		0.0023	[0.0015-0.0031] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
953	chr11	48250674	48250675	rs7127946	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11p11.2	OR4B1	rs7127946-C	0.36	6E-8		1.046682	[1.03-1.06]	Affymetrix, Illumina [9585923] (imputed)	N
953	chr11	48259199	48259200	rs77570136	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs77570136-C	NR	4E-11		0.053	[0.037-0.069] unit increase	Affymetrix [9000000] (imputed)	N
953	chr11	48279063	48279064	rs117875848	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs117875848-T	NR	8E-10		0.0519	[0.035-0.069] unit increase	Affymetrix [9000000] (imputed)	N
953	chr11	48285467	48285468	rs1354270589	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11p11.2		rs1354270589-?	NR	2E-9		1.08441	[0.74-1.43] unit decrease	NR [9800000] (imputed)	N
953	chr11	48285905	48285906	rs16905753	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.2	OR4X1	rs16905753-?	NR	7E-9		0.05041853	NR unit increase	Affymetrix [464137]	N
953	chr11	48290565	48290566	rs11039624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11p11.2		rs11039624-?	NR	2E-7				NR [~ 8900000] (imputed)	N
953	chr11	48302675	48302676	rs144738419	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.2	OR4X1	rs144738419-A	0.986958	3E-8		0.0494425	[0.032-0.067] unit increase	Affymetrix [NR] (imputed)	N
953	chr11	48332027	48332028	rs12282928	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	11p11.2	intergenic	rs12282928-?	0.77	9E-6		1.14	[1.08-1.2]	Affymetrix, Illumina [~ 2300000] (imputed)	N
953	chr11	48333359	48333360	rs1483121	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p11.2	OR4S1	rs1483121-A	0.1429	8E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
953	chr11	48333359	48333360	rs1483121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11p11.2	NR	rs1483121-A	NR	2E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
953	chr11	48333359	48333360	rs1483121	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting glucose levels (pleiotropy)	54,162 European ancestry cases, 58,047 European ancestry individuals	NA	11p11.2	OR4S1	rs1483121-?		6E-10				NR [NR]	N
953	chr11	48333359	48333360	rs1483121	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	OR4S1	rs1483121-A	0.1456	2E-8		0.00119	[-0.0004-0.00278] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
953	chr11	48333359	48333360	rs1483121	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11p11.2	OR4S1	rs1483121-A	0.1454	2E-9		0.0221	[0.015-0.029] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
953	chr11	48350645	48350646	rs77498573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p11.2	NR	rs77498573-T	NR	4E-12		0.0355	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
953	chr11	48363376	48363377	rs2046301	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	11p11.2	OR4C3, OR4C45	rs2046301-?	NR	3E-8				NR [~ 24000000] (imputed)	N
954	chr11	48373054	48373055	rs182638776	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.2	NR	rs182638776-A	0.888438	2E-21		0.0303691	[0.024-0.037] unit increase	NR [NR]	N
954	chr11	48382470	48382471	rs1351696	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	11p11.2	OR4C45	rs1351696-G	0.135	8E-6		0.0382	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
954	chr11	48414171	48414172	rs28876383	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	OR4C5	rs28876383-C	0.977417	4E-13		0.0523829	[0.038-0.067] unit increase	Affymetrix [NR] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	7E-11		0.0376516	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	4E-8		0.0344446	[0.022-0.047] unit increase	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	3E-10		0.0364068	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	9E-13		0.0417154	[0.03-0.053] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	2E-10		0.0367125	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	1E-11		0.0390478	[0.028-0.05] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	2E-11		0.0391808	[0.028-0.051] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs145276599-T	0.88962	3E-11		0.0387384	[0.027-0.05] unit decrease	NR [11722792] (imputed)	N
954	chr11	48444710	48444711	rs145276599	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.2	OR4C5	rs145276599-T	0.889817	2E-57		0.0485939	[0.043-0.055] unit decrease	Affymetrix [NR] (imputed)	N
954	chr11	48444710	48444711	rs145276599	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.2	OR4C5	rs145276599-T	0.889877	2E-29		0.0353086	[0.029-0.041] unit decrease	Affymetrix [NR] (imputed)	N
954	chr11	48454922	48454923	rs112481451	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs112481451-A	NR	2E-11		0.0441	[0.031-0.057] unit increase	Affymetrix [9000000] (imputed)	N
954	chr11	48454922	48454923	rs112481451	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs112481451-A	NR	4E-16		0.0555	[0.042-0.069] unit increase	Affymetrix [9000000] (imputed)	N
954	chr11	48459118	48459119	rs201729909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.2		rs201729909-T	0.860633	1E-10		0.0339449	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
954	chr11	48459118	48459119	rs201729909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs201729909-T	0.860634	1E-8		0.0307907	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
954	chr11	48459118	48459119	rs201729909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11p11.2		rs201729909-T	0.860634	5E-9		0.0312301	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
954	chr11	48466242	48466243	rs7929717	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	OR4C5, OR4A47	rs7929717-G	0.8601	1E-15		0.161	[0.12-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
954	chr11	48489359	48489360	rs149027146	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p11.2	NR	rs149027146-T	0.0602	2E-12		0.0738	[0.053-0.094] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
955	chr11	48518892	48518893	rs7395662	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	11p11.2	FOLH1, MADD	rs7395662-G	0.61	6E-11		0.07	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
955	chr11	48531667	48531667	rs371147897	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	11p11.2	OR4A47	rs371147897-?	0.342	2E-7		0.022	[0.014-0.03] unit decrease	Affymetrix [~ 10446505] (imputed)	N
955	chr11	48533488	48533489	rs189484085	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs189484085-?	NR	9E-8		0.3545	[0.22-0.48] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
955	chr11	48539762	48539763	rs180686303	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.2	NR	rs180686303-T	0.932458	2E-9		0.0229963	[0.015-0.031] unit decrease	NR [NR]	N
955	chr11	48540222	48540223	rs11039798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs11039798-A	NR	4E-29		0.0409	[0.034-0.048] unit increase	Affymetrix [9000000] (imputed)	N
955	chr11	48540222	48540223	rs11039798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.2	NR	rs11039798-A	NR	1E-37		0.0488	[0.041-0.056] unit increase	Affymetrix [9000000] (imputed)	N
955	chr11	48540222	48540223	rs11039798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.2	NR	rs11039798-A	NR	6E-15		0.0284	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
955	chr11	48540222	48540223	rs11039798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.2	NR	rs11039798-A	NR	4E-20		0.035	[0.028-0.042] unit increase	Affymetrix [9000000] (imputed)	N
955	chr11	48540222	48540223	rs11039798	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.2	OR4A47, TRIM49B	rs11039798-G	0.8719	2E-14		0.16	[0.12-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
955	chr11	48540222	48540223	rs11039798	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	11p11.2	OR4A47	rs11039798-A	0.1345	4E-6		0.0883	[0.051-0.126] unit increase	Illumina [2500000] (imputed)	N
955	chr11	48562984	48562985	rs72902692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.2	NR	rs72902692-T	NR	4E-10		0.0296	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
955	chr11	48594903	48594904	rs117578373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11p11.2	NR	rs117578373-A	NR	5E-9		0.0496	[0.033-0.066] unit increase	Affymetrix [9000000] (imputed)	N
956	chr11	48663225	48663225	rs531370782	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p11.2	intergenic	rs531370782-CT	0.0048	6E-11		0.1398	[0.098-0.182] unit increase	Affymetrix [18391927] (imputed)	N
956	chr11	48693638	48693639	rs140874911	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.2	OR4A47	rs140874911-C	0.931962	2E-13		0.0289068	[0.021-0.037] unit decrease	Affymetrix [NR] (imputed)	N
956	chr11	48728255	48728256	rs181813804	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.2	NR	rs181813804-?	NR	2E-7		0.3463	[0.22-0.48] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
956	chr11	48736091	48736092	rs12225683	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.2	intergenic	rs12225683-A	0.2352	1E-11		0.3358	[0.24-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
957	chr11	48808474	48808475	rs552743540	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	11p11.2	NR	rs552743540-?	NR	7E-6		0.322639	[0.18-0.46] unit decrease	NR [13958389] (imputed)	N
957	chr11	48811276	48811277	rs200267465	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs200267465-T	0.838783	5E-10		0.0327285	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
957	chr11	48811276	48811277	rs200267465	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs200267465-T	0.838783	4E-11		0.0342697	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
957	chr11	48812337	48812338	rs146077850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11p11.2		rs146077850-T	0.891469	8E-12		0.0406849	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
957	chr11	48812337	48812338	rs146077850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11p11.2		rs146077850-T	0.891469	1E-8		0.0350867	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
957	chr11	48812337	48812338	rs146077850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11p11.2		rs146077850-T	0.891469	1E-11		0.0407337	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
957	chr11	48812337	48812338	rs146077850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11p11.2		rs146077850-T	0.891469	9E-9		0.0360058	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
957	chr11	48812337	48812338	rs146077850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11p11.2		rs146077850-T	0.891469	6E-9		0.0342863	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
957	chr11	48873705	48873706	rs573037260	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11p11.12	NR	rs573037260-T		7E-9		0.13	[0.091-0.169] unit increase	NR [NR]	N
957	chr11	48877001	48877002	rs566217606	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11p11.12	NR	rs566217606-C	0.012742999999999949	1E-8		0.0222153	[0.014-0.03] unit increase	Affymetrix [16582909] (imputed)	N
957	chr11	48877001	48877002	rs566217606	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11p11.12	NR	rs566217606-C	0.012742999999999949	1E-5		0.0205436	[0.012-0.029] unit increase	Affymetrix [16582965] (imputed)	N
958	chr11	48902131	48902132	rs570699245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs570699245-C	0.891024	7E-9		0.03558	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
958	chr11	48923755	48923756	rs61448762	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p11.12	OR4A47, TRIM51GP	rs61448762-G		3E-7		0.459	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr11	48923755	48923756	rs61448762	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11p11.12	OR4A47, TRIM51GP	rs61448762-G		2E-7	(EA)	0.527	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr11	48923755	48923756	rs61448762	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.12	OR4A47, TRIM51GP	rs61448762-G		4E-9		0.358	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr11	48923755	48923756	rs61448762	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11p11.12	OR4A47, TRIM51GP	rs61448762-G		3E-6		0.172	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr11	48969943	48969944	rs3850930	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p11.12	Intergenic	rs3850930-A	NR	6E-7	(between families)	4.991	unit increase	Affymetrix [up to 15107142] (imputed)	N
958	chr11	49002246	49002247	rs10839204	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11p11.12	TRIM49B	rs10839204-T	0.139222	2E-9		0.05211763	[0.035-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
958	chr11	49007279	49007280	rs11040204	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	OR4A47, TRIM49B	rs11040204-C	0.8587	4E-14		0.151	[0.11-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
958	chr11	49011008	49011009	rs2202454	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p11.12	TRIM49B	rs2202454-C	0.140301	8E-11		0.07348617	[0.051-0.096] unit decrease	Affymetrix [7288503] (imputed)	N
959	chr11	49050523	49050525	rs142514677	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11p11.12	PTPRJ, FOLH1	rs142514677-?	NR	5E-14	(N-acetyl-aspartyl-glutamate)	0.79	[NR] unit decrease	Illumina [14760605] (imputed)	N
959	chr11	49057602	49057603	rs2727040	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p11.12	TRIM49B	rs2727040-T	0.2382	3E-10		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
959	chr11	49057602	49057603	rs2727040	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11p11.12	TRIM49B	rs2727040-T	0.24	8E-7		1.055	[1.0329-1.0776]	Affymetrix, Illumina [9585923] (imputed)	N
959	chr11	49071027	49071028	rs11606244	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11p11.12	NR	rs11606244-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-11		0.0290561	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-11		0.0290561	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	8E-10		0.0276585	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	8E-10		0.0276585	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	4E-8		0.0244825	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	4E-8		0.0244825	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	2E-9		0.0269175	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	2E-9		0.0269175	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249323	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249323	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	9E-10		0.0264073	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	9E-10		0.0264073	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	7E-12		0.0294775	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	7E-12		0.0294775	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249472	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249472	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	1E-8		0.0244426	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	1E-8		0.0244426	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-8		0.0247591	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-8		0.0247591	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	1E-10		0.0287195	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	1E-10		0.0287195	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	2E-11		0.0290967	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	2E-11		0.0290967	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-11		0.0283085	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-11		0.0283085	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-11		0.0294514	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	4E-11		0.0294514	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	9E-10		0.0275067	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358325	9E-10		0.0275067	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249909	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49104677	49104677	rs374209699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11p11.12		rs374209699-GT,rs374209699-GT	0.358307	2E-8		0.0249909	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
959	chr11	49110042	49110043	rs117461622	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11p11.12	TRIM64C	rs117461622-T	0.98704	3E-7		0.9524	[0.59-1.32] unit decrease	Affymetrix [8590397] (imputed)	N
959	chr11	49111406	49111407	rs2727020	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	11p11.12	TRIM64C	rs2727020-G	0.33	7E-6		0.79	[0.44-1.14] g/day increase	Affymetrix [10353649] (imputed)	N
959	chr11	49111406	49111407	rs2727020	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11p11.12	intergenic	rs2727020-C	0.6805	8E-6		0.031	[0.017-0.045] unit increase	NR [8041861] (imputed)	N
959	chr11	49115098	49115099	rs192463896	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs192463896-?	NR	4E-8		0.3856	[0.25-0.52] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
959	chr11	49130746	49130747	rs79249417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11p11.12	NR	rs79249417-T	0.092043	1E-11		0.021729	[0.015-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
959	chr11	49147808	49147809	rs72906356	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	11p11.12	NR	rs72906356-C	0.94	7E-9		0.06	[0.04-0.08] unit increase	NR [9704453]	N
959	chr11	49147808	49147809	rs72906356	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	11p11.12	NR	rs72906356-C	0.94	8E-6		0.04	[0.024-0.056] unit increase	NR [9704453]	N
960	chr11	49154904	49154905	rs10839227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs10839227-G	0.767067	2E-8		0.0253814	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr11	49154904	49154905	rs10839227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11p11.12		rs10839227-G	0.767067	4E-9		0.0259801	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr11	49154904	49154905	rs10839227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11p11.12		rs10839227-G	0.767067	8E-9		0.0259601	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr11	49154904	49154905	rs10839227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	11p11.12		rs10839227-G	0.767067	8E-9		0.0265118	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr11	49154904	49154905	rs10839227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11p11.12		rs10839227-G	0.767067	3E-9		0.0265623	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr11	49155032	49155033	rs10839228	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs10839228-G	0.767069	1E-9		0.026911	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr11	49158258	49158259	rs2030971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.12	NR	rs2030971-T	0.681934	8E-11				Affymetrix, Illumina [17210439] (imputed)	N
960	chr11	49167660	49167661	rs150151341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.12		rs150151341-?	NR	1E-14				NR [~ 8900000] (imputed)	N
960	chr11	49172418	49172419	rs7946236	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOLH1	5,367 Icelandic ancestry individuals	NA	11p11.12		rs7946236-A	0.03412	7E-20		0.711834	[0.56-0.86] unit increase	Illumina [7506463] (imputed)	N
960	chr11	49177807	49177808	rs55728336	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11p11.12	FOLH1	rs55728336-C	0.05	3E-96	(N-acetyl-aspartyl-glutamate (NAAG))	0.676	[0.61-0.74] unit decrease	Illumina [7750367] (imputed)	N
960	chr11	49202186	49202187	rs7124497	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x dichotomous lifestyle risk score interaction (2df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	11p11.12	FOLH1	rs7124497-G	0.95	7E-7				NR [2407629] (imputed)	N
960	chr11	49203861	49203862	rs148966811	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11p11.12	FOLH1	rs148966811-C	0.96359375	3E-26	(FOLH1, 5478_50_2)	0.71087927	[0.58-0.84] unit decrease	Illumina [> 1000000] (imputed)	N
960	chr11	49205120	49205121	rs4929895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.12	FOLH1	rs4929895-G	0.409486	3E-84	(N-acetyl-aspartyl-glutamate (NAAG))	0.455	[0.41-0.5] unit decrease	Illumina [13039987] (imputed)	N
960	chr11	49205120	49205121	rs4929895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p11.12	FOLH1	rs4929895-G	0.409486	3E-84	(N-acetyl-aspartyl-glutamate (NAAG))	0.455	[0.41-0.5] unit decrease	Illumina [13039987] (imputed)	N
960	chr11	49224884	49224885	rs185558485	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs185558485-?	NR	7E-8		0.391	[0.25-0.53] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
960	chr11	49227619	49227620	rs202676	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	FOLH1	rs202676-A	0.7619	3E-12		0.111	[0.079-0.143] unit decrease	Affymetrix [~ 11900000] (imputed)	N
960	chr11	49245259	49245260	rs191332680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.12	NR	rs191332680-A	NR	4E-10		0.0564	[0.039-0.074] unit increase	Affymetrix [9000000] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.12	FOLH1, LOC440040	rs658118-T	NR	7E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11p11.12	FOLH1, LOC440040	rs658118-T	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.12	FOLH1, LOC440040	rs658118-T	NR	1E-49	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11p11.12	FOLH1, LOC440040	rs658118-T	NR	1E-39				Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.12	FOLH1, LOC440040	rs658118-T	NR	5E-9	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49255041	49255042	rs658118	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11p11.12	FOLH1, LOC440040	rs658118-T	NR	1E-6		0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr11	49259393	49259394	rs142750344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.12		rs142750344-?	NR	2E-12				NR [~ 8900000] (imputed)	N
960	chr11	49267145	49267146	rs7924431	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11p11.12	NR	rs7924431-?	NR	7E-9		0.05045032	NR unit increase	Affymetrix [464137]	N
961	chr11	49297126	49297127	rs3862341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11p11.12		rs3862341-?	NR	3E-7				NR [~ 8900000] (imputed)	N
961	chr11	49300456	49300457	rs7103270	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	11p11.12	NR	rs7103270-T	0.8586	7E-12	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
961	chr11	49301640	49301641	rs1164660	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11p11.12	intergenic	rs1164660-T	0.5825	5E-15		0.0158	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
961	chr11	49313234	49313235	rs10769572	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11p11.12	FOLH1	rs10769572-A	0.2529	4E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
961	chr11	49315044	49315045	rs61885293	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.12	FOLH1, LOC440040	rs61885293-A	0.960351	4E-58	(N-acetyl-aspartyl-glutamate (NAAG))	0.932	[0.82-1.05] unit increase	Illumina [13039987] (imputed)	N
961	chr11	49315044	49315045	rs61885293	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11p11.12	FOLH1, LOC440040	rs61885293-A	0.960351	4E-58	(N-acetyl-aspartyl-glutamate (NAAG))	0.932	[0.82-1.05] unit increase	Illumina [13039987] (imputed)	N
961	chr11	49329520	49329521	rs1164671	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11p11.12	intergenic	rs1164671-?	NR	1E-8		0.0189	[0.013-0.025] unit increase	Affymetrix [5701386] (imputed)	N
961	chr11	49335281	49335282	rs115208852	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	11p11.12		rs115208852-A	0.96	2E-10		0.1692	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
961	chr11	49343665	49343666	rs187625542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.12		rs187625542-?	NR	9E-8				NR [~ 8900000] (imputed)	N
961	chr11	49346331	49346332	rs11040333	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11p11.12	FOLH1	rs11040333-G	0.290309	3E-8		0.00854938	[0.0055-0.0116] unit decrease	Affymetrix [12370749]	N
961	chr11	49351025	49351026	rs7929543	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA		TYRL	rs7929543-C	0.0831598873051136	2E-9		0.0828	[0.056-0.11] unit increase	NR [5035015] (imputed)	N
961	chr11	49372050	49372051	rs4109837	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.12	FOLH1	rs4109837-A	0.302	1E-10		0.2287	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
962	chr11	49418778	49418779	rs192874339	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs192874339-?	NR	7E-7		0.353	[0.21-0.49] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
962	chr11	49422664	49422665	rs1917311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11p11.12		rs1917311-T	NR	7E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
962	chr11	49446563	49446564	rs7118273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs7118273-A	0.856299	6E-10		0.0322708	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
962	chr11	49446563	49446564	rs7118273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11p11.12		rs7118273-A	0.856299	3E-9		0.0306817	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
962	chr11	49446563	49446564	rs7118273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs7118273-A	0.856299	8E-9		0.0300017	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
962	chr11	49446563	49446564	rs7118273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs7118273-A	0.856299	1E-8		0.0297161	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
962	chr11	49500474	49500475	rs73457437	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.12	FOLH1	rs73457437-G	0.967901	8E-11		0.0350687	[0.024-0.046] unit increase	Affymetrix [NR] (imputed)	N
962	chr11	49500474	49500475	rs73457437	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.12	FOLH1	rs73457437-G	0.967898	1E-9		0.0336631	[0.023-0.045] unit increase	Affymetrix [NR] (imputed)	N
963	chr11	49559171	49559172	rs1814175	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11p11.12	FOLH1	rs1814175-T	0.34	2E-8		0.022	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
963	chr11	49585778	49585779	rs11040429	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11p11.12	RP11-707M1.1	rs11040429-A	0.4945	8E-7		0.0381	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
963	chr11	49614442	49614443	rs10839308	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.12		rs10839308-G	0.870181	8E-9		0.0320628	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
963	chr11	49616838	49616839	rs12224170	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.12	OR4C13	rs12224170-G	0.868504	1E-48		0.0412385	[0.036-0.047] unit decrease	Affymetrix [NR] (imputed)	N
963	chr11	49616838	49616839	rs12224170	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.12	OR4C13	rs12224170-G	0.868542	5E-26		0.0306257	[0.025-0.036] unit decrease	Affymetrix [NR] (imputed)	N
963	chr11	49623203	49623204	rs61137716	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	LOC440040	rs61137716-G	0.7663	3E-13		0.118	[0.085-0.151] unit decrease	Affymetrix [~ 11900000] (imputed)	N
964	chr11	49681183	49681184	rs191856980	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs191856980-?	NR	3E-7		0.345	[0.21-0.48] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
964	chr11	49681880	49681881	rs10769601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11p11.12		rs10769601-?	NR	6E-12				NR [~ 8900000] (imputed)	N
964	chr11	49703115	49703116	rs11040472	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	11p11.12	NR	rs11040472-T	NR	3E-6				NR [NR] (imputed)	N
964	chr11	49703115	49703116	rs11040472	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	11p11.12	NR	rs11040472-T	NR	3E-6				NR [NR] (imputed)	N
964	chr11	49711822	49711822	rs199507956	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11p11.12	LOC440040	rs199507956-G	0.148609	5E-10		0.0192208	[0.013-0.025] unit decrease	NR [16516521] (imputed)	N
964	chr11	49758608	49758609	rs533857953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11p11.12		rs533857953-G	0.00502	1E-8		0.226237	[0.15-0.3] unit increase	Illumina [13465896] (imputed)	N
964	chr11	49761485	49761486	rs7482876	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.12	FOLH1	rs7482876-C	0.330292	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
964	chr11	49786494	49786495	rs61905599	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.12	OR4C13	rs61905599-C	0.978278	2E-8		0.0391427	[0.026-0.053] unit increase	Affymetrix [NR] (imputed)	N
965	chr11	49845320	49845321	rs146706984	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.12	OR4C13	rs146706984-G	0.921551	4E-10		0.0233017	[0.016-0.031] unit decrease	Affymetrix [NR] (imputed)	N
965	chr11	49855633	49855634	rs77828979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11p11.12	NR	rs77828979-C	NR	2E-21		0.0342	[0.027-0.041] unit increase	Affymetrix [9000000] (imputed)	N
965	chr11	49855633	49855634	rs77828979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11p11.12	NR	rs77828979-C	NR	7E-35		0.0462	[0.039-0.053] unit increase	Affymetrix [9000000] (imputed)	N
965	chr11	49855633	49855634	rs77828979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11p11.12	NR	rs77828979-C	NR	2E-12		0.0252	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
965	chr11	49855633	49855634	rs77828979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11p11.12	NR	rs77828979-C	NR	6E-19		0.0335	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
965	chr11	49855633	49855634	rs77828979	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	LOC440040, OR4C13	rs77828979-T	0.8676	6E-12		0.14	[0.1-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
965	chr11	49864050	49864051	rs138717729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.12		rs138717729-?	NR	2E-8				NR [~ 8900000] (imputed)	N
965	chr11	49874063	49874064	rs2177535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11p11.12	NR	rs2177535-T	0.1415	1E-10		0.023868	[0.017-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
965	chr11	49878756	49878757	rs11040595	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.12	LOC440040	rs11040595-T	0.1304	1E-11		0.2779	[0.2-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	6E-9		0.0334932	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	2E-8		0.0324225	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	4E-10		0.0366472	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	2E-8		0.0324562	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	3E-9		0.03433	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
965	chr11	49905729	49905730	rs17474890	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11p11.12		rs17474890-A	0.885755	4E-10		0.0368597	[0.025-0.048] unit decrease	NR [11722792] (imputed)	N
965	chr11	49907299	49907300	rs74353024	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11p11.12	LOC440040, OR4C13	rs74353024-A	0.987146	5E-37	(N-acetyl-aspartyl-glutamate (NAAG))	1.583	[1.34-1.83] unit increase	Illumina [13039987] (imputed)	N
965	chr11	49910840	49910841	rs1794138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11p11.12		rs1794138-G	NR	7E-9		0.0449	[0.03-0.06] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
965	chr11	49931862	49931863	rs78069793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11p11.12		rs78069793-A	NR	9E-9		0.0311	[0.021-0.042] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
966	chr11	49954850	49954851	rs184853555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11p11.12		rs184853555-?	NR	2E-8				NR [~ 8900000] (imputed)	N
966	chr11	50016057	50016058	rs113221947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11p11.12		rs113221947-?	NR	2E-9				NR [~ 8900000] (imputed)	N
966	chr11	50065968	50065969	rs4309155	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.12	NR	rs4309155-A	0.336215	4E-8		5.48	z score decrease	NR [10847151] (imputed)	N
967	chr11	50073177	50073178	rs2313143	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11p11.12	Intergenic	rs2313143-A	NR	2E-7	(between families)	5.224	unit increase	Affymetrix [up to 15107142] (imputed)	N
967	chr11	50073262	50073263	rs11245604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11p11.12		rs11245604-A	NR	4E-9		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
967	chr11	50096094	50096095	rs2201637	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11p11.12	NR	rs2201637-G	0.883807	9E-17		0.0269263	[0.021-0.033] unit increase	NR [NR]	N
967	chr11	50096424	50096425	rs4881702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.12	NR	rs4881702-T	0.127584	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
967	chr11	50110596	50110597	rs11561066	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11p11.12	NR	rs11561066-C	0.1301	3E-12		0.0451	[0.032-0.058] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
967	chr11	50120567	50120568	rs147455989	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs147455989-?	NR	4E-7		0.3508	[0.21-0.49] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
968	chr11	50219349	50219350	rs189593992	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.12	LOC441601	rs189593992-A	0.8916	9E-9		0.3083	[0.2-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
968	chr11	50224414	50224415	rs10794221	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.12	NR	rs10794221-T	0.354884	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
968	chr11	50224699	50224700	rs181706792	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs181706792-?	NR	5E-7		0.3316	[0.2-0.46] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
969	chr11	50344012	50344013	rs118174209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11p11.12		rs118174209-A	NR	2E-8		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
969	chr11	50344220	50344221	rs117353933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11p11.12	NR	rs117353933-A	NR	4E-10		0.0282	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
969	chr11	50363430	50363431	rs4065934	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11p11.12	NR	rs4065934-C	0.449	8E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
969	chr11	50365905	50365906	rs574542723	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	LOC441601, LOC646813	rs574542723-T	0.8777	1E-12		0.155	[0.11-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
969	chr11	50367358	50367359	rs7103246	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11p11.12	LOC646813	rs7103246-T	0.8666	7E-12		0.139	[0.099-0.179] unit decrease	Affymetrix [~ 11900000] (imputed)	N
969	chr11	50388004	50388005	rs691329	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11p11.12	LOC646813, OR4A5	rs691329-?	NR	3E-8		0.02244	[0.015-0.03] unit increase novel	Illumina [6108953] (imputed)	N
969	chr11	50388004	50388005	rs691329	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11p11.12	LOC646813, OR4A5	rs691329-?	NR	2E-8		0.02212	[0.014-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
969	chr11	50404318	50404319	rs80257854	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11p11.12	RP11-347H15.4	rs80257854-G	0.128966	2E-8		0.0658866	[0.043-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
969	chr11	50423493	50423494	rs692360	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.12	NR	rs692360-A	0.352273	2E-9		5.96	z score decrease	NR [10847151] (imputed)	N
969	chr11	50453116	50453117	rs137924221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11p11.12		rs137924221-T	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
970	chr11	50468800	50468801	rs1813937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11p11.12		rs1813937-T	NR	3E-11		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
970	chr11	50468800	50468801	rs1813937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11p11.12	LOC646813	rs1813937-T	0.7185	3E-11		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
970	chr11	50468800	50468801	rs1813937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11p11.12	LOC646813	rs1813937-T	0.5574	4E-6		0.0032	[0.0018-0.0046] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
970	chr11	50468800	50468801	rs1813937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11p11.12	LOC646813	rs1813937-C	0.28	1E-7		1.0485477	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
970	chr11	50469573	50469574	rs4963089	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	11p11.12	LOC646813, OR4A5	rs4963089-A	0.437659	8E-6		0.329785	[0.18-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
970	chr11	50472932	50472933	rs143860577	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs143860577-?	NR	6E-9		0.4536	[0.3-0.61] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
970	chr11	50474000	50474001	rs139858043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.12	NR	rs139858043-T	0.039293	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	5E-8		0.0477861	[0.031-0.065] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	4E-9		0.0499024	[0.033-0.067] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	1E-8		0.0486306	[0.032-0.065] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	9E-9		0.0493941	[0.033-0.066] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	3E-8		0.0484644	[0.031-0.066] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	4E-8		0.0481195	[0.031-0.065] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	2E-8		0.0486008	[0.032-0.066] unit decrease	NR [11722792] (imputed)	N
970	chr11	50511626	50511627	rs77197725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11p11.12		rs77197725-C	0.944121	2E-8		0.0489043	[0.032-0.066] unit decrease	NR [11722792] (imputed)	N
970	chr11	50524831	50524832	rs11537285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11p11.12		rs11537285-A	0.867648	1E-9		0.0330098	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
970	chr11	50524831	50524832	rs11537285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11p11.12		rs11537285-A	0.867648	1E-9		0.0326422	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
970	chr11	50524831	50524832	rs11537285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs11537285-A	0.867648	2E-9		0.0322803	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
970	chr11	50524831	50524832	rs11537285	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11p11.12		rs11537285-A	0.867648	3E-9		0.0319129	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
970	chr11	50542338	50542339	rs145927176	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11p11.12	NR	rs145927176-A	0.983	7E-7		4.5248	[2.73-6.32] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
970	chr11	50542338	50542339	rs145927176	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	11p11.12	NR	rs145927176-A	0.983	7E-7		4.5248	[2.73-6.32] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
970	chr11	50558264	50558265	rs184694846	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.12	NR	rs184694846-?	NR	3E-6		0.0079054	[0.0046-0.0112] unit increase	Affymetrix [805426] (imputed)	N
970	chr11	50561634	50561635	rs10901988	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	11p11.12	LINC02750	rs10901988-?	NR	8E-12				NR [3144808] (imputed)	N
970	chr11	50579882	50579883	rs74419455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11p11.12		rs74419455-?	NR	3E-8				NR [~ 8900000] (imputed)	N
971	chr11	50596704	50596705	rs4098996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11p11.12	NR	rs4098996-C	0.813957	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
971	chr11	50596704	50596705	rs4098996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11p11.12	NR	rs4098996-C	0.81602	1E-12		0.017915	[0.013-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
971	chr11	50611509	50611510	rs78297458	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11p11.12	OR4C12	rs78297458-T	0.977551	1E-8		0.0385404	[0.025-0.052] unit increase	Affymetrix [NR] (imputed)	N
971	chr11	50619510	50619511	rs12422125	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.12	OR4C12	rs12422125-G	0.886668	8E-50		0.0448373	[0.039-0.051] unit decrease	Affymetrix [NR] (imputed)	N
971	chr11	50619510	50619511	rs12422125	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.12	OR4C12	rs12422125-G	0.886715	3E-26		0.0329585	[0.027-0.039] unit decrease	Affymetrix [NR] (imputed)	N
971	chr11	50623118	50623119	rs148268781	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11p11.12	NR	rs148268781-?	NR	5E-9		0.458	[0.3-0.61] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
971	chr11	50624798	50624799	rs4980470	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11p11.12	intergenic	rs4980470-A	0.5874	1E-8		0.1561	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
971	chr11	50628093	50628094	rs143474489	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11p11.12	OR4C12	rs143474489-T	0.977616	1E-13		0.0483333	[0.036-0.061] unit decrease	Affymetrix [NR] (imputed)	N
971	chr11	50628093	50628094	rs143474489	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11p11.12	OR4C12	rs143474489-T	0.977613	6E-10		0.0415221	[0.028-0.055] unit decrease	Affymetrix [NR] (imputed)	N
971	chr11	50632991	50632992	rs79479431	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11p11.12		rs79479431-A	0.944091	4E-9		0.0488976	[0.033-0.065] unit increase	NR [11722792] (imputed)	N
971	chr11	50649708	50649709	rs4980483	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11p11.12		rs4980483-?	NR	3E-13		0.020015	[0.015-0.025] unit increase	Affymetrix [20259828] (imputed)	N
971	chr11	50678220	50678221	rs567071568	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11p11.12	NR	rs567071568-?	NR	3E-6		0.0078824	[0.0046-0.0112] unit increase	Affymetrix [805426] (imputed)	N
972	chr11	50733505	50733506	rs4554882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11p11.12		rs4554882-T	NR	3E-8		0.0643	[0.042-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
972	chr11	50772685	50772686	rs11532157	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11p11.12	OR4A5	rs11532157-T	0.301323	5E-10		6.22	z score decrease	NR [10847151] (imputed)	N
972	chr11	50774063	50774064	rs558925210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11p11.12		rs558925210-T	NR	1E-9		0.0281	[0.019-0.037] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
972	chr11	50777865	50777866	rs11826064	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11p11.12	NR	rs11826064-T	NR	7E-10		0.01562	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
975	chr11	51160885	51160886	rs61919816	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA		OR4A5	rs61919816-C	0.975611	1E-9		0.0437704	[0.03-0.058] unit increase	Affymetrix [NR] (imputed)	N
975	chr11	51199900	51199901	rs12284535	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11q11	NR	rs12284535-A	0.293027	3E-9		5.92	z score decrease	NR [10847151] (imputed)	N
975	chr11	51202054	51202055	rs141610074	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	11q11	AC110283.1	rs141610074-T	0.0081	4E-8		0.10023	[0.065-0.136] unit decrease	Affymetrix [up to 29454346] (imputed)	N
975	chr11	51225416	51225417	rs150556827	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q11	OR4C1	rs150556827-?	NR	1E-12	(N-acetyl-aspartyl-glutamate)	0.86	[NR] unit decrease	Illumina [14760605] (imputed)	N
975	chr11	51238711	51238712	rs10902298	33338681	Chu H	2020-12-15	Environ Int	A prospective study of the associations among fine particulate matter, genetic variants, and the risk of colorectal cancer.	Colorectal cancer x fine particulate matter exposure levels interaction	590 European ancestry cases, 55 Black cases, 9 Hispanic cases, 28 Asian ancestry cases, 5 cases, 12,715 European ancestry controls, 1,153 Black controls, 37 Hispanic controls, 94 Asian ancestry controls, 15 controls	NA	11q11	OR4A5	rs10902298-T	0.054	1E-10		1.23	[1.16-1.31]	Illumina [4085111] (imputed)	N
975	chr11	51247432	51247433	rs12270310	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q11		rs12270310-?	NR	1E-9		0.0439406	[0.03-0.058] unit decrease	Affymetrix [20259828] (imputed)	N
976	chr11	51266468	51266469	rs139411693	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q11	NR	rs139411693-?	NR	3E-6		0.0078996	[0.0046-0.0112] unit increase	Affymetrix [805426] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	1E-8		0.0332558	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	4E-8		0.031855	[0.02-0.043] unit decrease	NR [11722792] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	1E-9		0.0359745	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	2E-8		0.0325594	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	5E-9		0.0342715	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
976	chr11	51267032	51267033	rs76860108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q11		rs76860108-C	0.887779	1E-9		0.036056	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
976	chr11	51284370	51284371	rs117875263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11q11		rs117875263-T	0.324766	1E-8		0.0177156	[0.012-0.024] unit increase	Illumina [13478778] (imputed)	N
976	chr11	51291312	51291313	rs1587335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs1587335-T	0.172566	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
976	chr11	51310920	51310921	rs11535934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q11	NR	rs11535934-A	0.107686	2E-10		0.019198	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
976	chr11	51322939	51322940	rs10902324	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11q11	NR	rs10902324-A	0.304081	3E-9		5.92	z score increase	NR [10847151] (imputed)	N
976	chr11	51377254	51377255	rs11246533	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q11	LOC646813, OR4A5	rs11246533-T	NR	7E-6				Affymetrix, Illumina [NR] (imputed)	N
976	chr11	51377254	51377255	rs11246533	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q11	LOC646813, OR4A5	rs11246533-T	NR	7E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
976	chr11	51377254	51377255	rs11246533	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q11	LOC646813, OR4A5	rs11246533-T	NR	6E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
976	chr11	51377254	51377255	rs11246533	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q11	LOC646813, OR4A5	rs11246533-T	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
976	chr11	51377254	51377255	rs11246533	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q11	LOC646813, OR4A5	rs11246533-T	NR	3E-8	(EA)	0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
977	chr11	51394931	51394932	rs1391576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q11	OR4A5	rs1391576-T	0.115	3E-7	(EA, men)	0.033	[0.02-0.046] kg/m2 increase	Affymetrix, Illumina [2550021]	N
977	chr11	51403302	51403303	rs1939285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q11	NR	rs1939285-T	NR	3E-12		0.052	[0.037-0.067] unit increase	Affymetrix [9000000] (imputed)	N
977	chr11	51414217	51414218	rs5017948	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q11	OR4A5	rs5017948-A	0.18	3E-8		0.027	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
977	chr11	51421908	51421909	rs11532186	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q11	OR4A5	rs11532186-T	0.7936	7E-10		0.0029	[0.0019-0.0039] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
977	chr11	51421908	51421909	rs11532186	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11q11	OR4A5	rs11532186-T	0.729	7E-7		0.0039	[0.0023-0.0055] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
977	chr11	51422104	51422105	rs61890355	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	11q11		rs61890355-?	NR	2E-8		5.581305	z score increase	Affymetrix [NR] (imputed)	N
977	chr11	51423966	51423967	rs11246554	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q11	OR4A5, OR4C46	rs11246554-A	0.8669	1E-12		0.143	[0.1-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
977	chr11	51430518	51430519	rs142286129	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11q11	NR	rs142286129-?	NR	2E-9		0.458	[0.31-0.61] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
977	chr11	51445711	51445712	rs112111664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q11		rs112111664-C	0.201238	5E-11		0.018676	[0.013-0.024] unit increase	Illumina [13479295] (imputed)	N
977	chr11	51457276	51457277	rs11246574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q11	NR	rs11246574-A	NR	3E-19		0.0343	[0.027-0.042] unit increase	Affymetrix [9000000] (imputed)	N
977	chr11	51457276	51457277	rs11246574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q11	NR	rs11246574-A	NR	7E-33		0.0475	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
977	chr11	51457276	51457277	rs11246574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q11	NR	rs11246574-A	NR	1E-12		0.0272	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr11	51457276	51457277	rs11246574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q11	NR	rs11246574-A	NR	3E-17		0.0338	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
977	chr11	51457276	51457277	rs11246574	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q11	NR	rs11246574-G	0.882456	1E-15		0.0257958	[0.019-0.032] unit increase	NR [NR]	N
977	chr11	51457276	51457277	rs11246574	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11q11	OR4A5	rs11246574-A	0.11677	2E-8		0.06845206	[0.044-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
977	chr11	51469807	51469808	rs181703235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs181703235-A	0.0391268	4E-10				Affymetrix, Illumina [24588908] (imputed)	N
977	chr11	51469807	51469808	rs181703235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q11	NR	rs181703235-A	0.040425	2E-12		0.035652	[0.026-0.046] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
977	chr11	51477510	51477511	rs146213057	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	11q11	NR	rs146213057-A	0.01	4E-8		0.084	[0.055-0.113] unit increase	Affymetrix [~ 8600000] (imputed)	N
977	chr11	51503004	51503005	rs4391797	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11q11	NR	rs4391797-T	0.306108	2E-9		6.0	z score increase	NR [10847151] (imputed)	N
977	chr11	51504992	51504993	rs4300379	31250797	Brick LA	2019-05-01	J Stud Alcohol Drugs	Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry.	Opioid dependence	2,120 European ancestry cases, 1,944 European ancestry controls	NA	11q11	intergenic	rs4300379-G	NR	9E-7		0.06	[0.04-0.08] unit decrease	Illumina [6200495] (imputed)	N
978	chr11	51512089	51512090	rs11246602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q11	NR	rs11246602-T	NR	1E-14		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
978	chr11	51512089	51512090	rs11246602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q11	NR	rs11246602-T	0.878	2E-16	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
978	chr11	51512089	51512090	rs11246602	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q11	OR4C46	rs11246602-T	0.867	5E-9	(Trans-ethnic initial)	0.034	[0.024-0.044] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
978	chr11	51512089	51512090	rs11246602	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q11	OR4C46	rs11246602-C	0.15	2E-10		0.034	[NR] unit increase	NR [NR] (imputed)	N
978	chr11	51514677	51514678	rs139917442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q11	NR	rs139917442-C	NR	5E-17		0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
978	chr11	51514677	51514678	rs139917442	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q11	NR	rs139917442-C	0.896	7E-17	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
978	chr11	51515911	51515912	rs77689730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q11		rs77689730-T	0.1084	9E-11		0.22344173	[0.15-0.29] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
978	chr11	51515911	51515912	rs77689730	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q11		rs77689730-T	0.1085	1E-11		0.16730277	[0.12-0.22] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
978	chr11	51517072	51517073	rs4434990	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11q11	OR4C46	rs4434990-G	0.87	2E-11				Affymetrix, Illumina [8002429] (imputed)	N
978	chr11	51517378	51517379	rs10902360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs10902360-T	0.135619	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
978	chr11	51518260	51518261	rs11246610	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q11	OR4C46	rs11246610-G	0.8667	3E-12		0.141	[0.1-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
978	chr11	51525118	51525119	rs149905885	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q11		rs149905885-C	0.946335	2E-8		0.0486175	[0.032-0.066] unit decrease	NR [11722792] (imputed)	N
978	chr11	51526910	51526911	rs116560015	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q11	NR	rs116560015-T	NR	6E-10		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
978	chr11	51527009	51527010	rs10902366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q11		rs10902366-G	NR	4E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
978	chr11	51527636	51527637	rs111467734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q11	NR	rs111467734-A	NR	4E-9		0.029	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
978	chr11	51534340	51534341	rs4378369	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs4378369-C	0.867842	2E-8		0.0301576	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
978	chr11	51539330	51539331	rs371033477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q11		rs371033477-G	NR	5E-8		0.0205	[0.013-0.028] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
978	chr11	51539338	51539339	rs4385883	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q11	TRIM48	rs4385883-T	0.2877	1E-16		0.2331	[0.18-0.29] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
978	chr11	51552189	51552190	rs11246644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q11		rs11246644-T	0.867841	5E-9		0.0315642	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
978	chr11	51552189	51552190	rs11246644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q11		rs11246644-T	0.867841	7E-9		0.0309351	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
978	chr11	51552189	51552190	rs11246644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs11246644-T	0.867841	1E-8		0.0305033	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
978	chr11	51552592	51552593	rs533659291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11q11		rs533659291-G	0.005813	2E-8		0.183299	[0.12-0.25] unit increase	Illumina [13465896] (imputed)	N
978	chr11	51565770	51565771	rs190666382	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11q11	NR	rs190666382-?	NR	7E-10		0.4668	[0.32-0.62] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
978	chr11	51578096	51578097	rs11246667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q11		rs11246667-A	NR	9E-9		0.0191	[0.013-0.026] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
978	chr11	51579821	51579822	rs4881769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q11		rs4881769-T	NR	3E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
978	chr11	51586234	51586235	rs12292205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q11		rs12292205-C	NR	4E-14		0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
978	chr11	51590312	51590313	rs11502350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q11	NR	rs11502350-C	0.112267	9E-11		0.030071	[0.021-0.039] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1002	chr11	54755317	54755318	rs544237040	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q11	NONE, TRIM48	rs544237040-G	0.968059	2E-50	(N-acetyl-aspartyl-glutamate (NAAG))	0.963	[0.84-1.09] unit increase	Illumina [13039987] (imputed)	N
1002	chr11	54774307	54774308	rs201170069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs201170069-A	0.298156	3E-13				Affymetrix, Illumina [20825802] (imputed)	N
1003	chr11	54794726	54794727	rs1608400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q11		rs1608400-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	2E-9		0.0353558	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	1E-8		0.0333689	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	5E-9		0.0339522	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	8E-9		0.0337436	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	2E-9		0.0355207	[0.024-0.047] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54796786	54796787	rs111514504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs111514504-C	0.88789	1E-8		0.0334101	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54804992	54804993	rs28872512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q11		rs28872512-G	0.866678	3E-9		0.0319048	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
1003	chr11	54804992	54804993	rs28872512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q11		rs28872512-A	NR	2E-34		0.0409	[0.034-0.047] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1003	chr11	54804992	54804993	rs28872512	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q11	TRIM48	rs28872512-G	0.8666	7E-13		0.145	[0.1-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1003	chr11	54817747	54817748	rs2177345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q11		rs2177345-G	NR	2E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1003	chr11	54818070	54818071	rs28807461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q11		rs28807461-A	NR	4E-11		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1003	chr11	54830427	54830428	rs118176061	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	11q11		rs118176061-?	NR	4E-8		5.4924283	z score increase	Affymetrix [NR] (imputed)	N
1003	chr11	54832325	54832326	rs61898064	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q11	TRIM48	rs61898064-T	0.05	1E-73	(N-acetyl-aspartyl-glutamate (NAAG))	0.625	[0.56-0.69] unit decrease	Illumina [7750367] (imputed)	N
1003	chr11	54838538	54838539	rs9704992	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q11	NONE, TRIM48	rs9704992-T	0.431626	7E-55	(N-acetyl-aspartyl-glutamate (NAAG))	0.359	[0.31-0.4] unit decrease	Illumina [13039987] (imputed)	N
1003	chr11	54838538	54838539	rs9704992	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q11	NONE, TRIM48	rs9704992-T	0.431626	7E-55	(N-acetyl-aspartyl-glutamate (NAAG))	0.359	[0.31-0.4] unit decrease	Illumina [13039987] (imputed)	N
1003	chr11	54840669	54840670	rs2688708	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q11	NR	rs2688708-C	NR	4E-9		0.01501	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1003	chr11	54846439	54846440	rs11228871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q11	TRIM48	rs11228871-A	0.868723	7E-47		0.0405441	[0.035-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr11	54846439	54846440	rs11228871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q11	TRIM48	rs11228871-A	0.868767	4E-25		0.0301034	[0.024-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr11	54860921	54860922	rs12362717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q11	NR	rs12362717-T	0.162586	3E-12		0.019141	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1003	chr11	54860921	54860922	rs12362717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q11		rs12362717-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1003	chr11	54862267	54862268	rs117339203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q11		rs117339203-T	NR	3E-8		0.0207	[0.013-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1003	chr11	54867853	54867854	rs74966104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q11		rs74966104-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1003	chr11	54877476	54877477	rs11560961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11q11		rs11560961-A	0.324567	6E-9		0.0177629	[0.012-0.024] unit increase	Illumina [13478778] (imputed)	N
1003	chr11	54899332	54899333	rs2262535	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	11q11		rs2262535-A	0.04	3E-9		0.1451	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1003	chr11	54914811	54914812	rs2262536	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	11q11	TRIM48	rs2262536-T	0.291554	2E-9		6.04	z score decrease	NR [10847151] (imputed)	N
1004	chr11	54938841	54938842	rs11227435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs11227435-C	0.127923	9E-20				Affymetrix, Illumina [23472807] (imputed)	N
1004	chr11	54946417	54946418	rs11534520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11q11		rs11534520-T	NR	3E-8		0.0656	[0.042-0.089] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1004	chr11	54959855	54959856	rs113230849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q11	NR	rs113230849-C	0.149717	5E-20		0.027375	[0.022-0.033] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1004	chr11	54986792	54986793	rs74897213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q11		rs74897213-A	NR	4E-10		0.0335	[0.023-0.044] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1004	chr11	54986792	54986793	rs74897213	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q11	TRIM48	rs74897213-G	0.948197	8E-9		0.0265429	[0.018-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1004	chr11	55020469	55020470	rs11228868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs11228868-T	0.146439	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
1004	chr11	55023299	55023300	rs12221645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q11		rs12221645-C	NR	1E-14		0.0261	[0.019-0.033] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1004	chr11	55029454	55029455	rs61894884	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q11	TRIM48	rs61894884-T	0.989	8E-6		0.1975	[0.11-0.28] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr11	55042759	55042760	rs549317738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11q11		rs549317738-A	NR	3E-25		57.1764	[46.39-67.96] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
1005	chr11	55072181	55072182	rs12806498	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11q11	TRIM51HP, OR4A16	rs12806498-?	NR	7E-9		0.02384	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1005	chr11	55085500	55085501	rs7936821	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q11	TRIM51HP	rs7936821-C	0.865	3E-14		0.143	[0.11-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1005	chr11	55091573	55091574	rs10459012	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11q11	TRIM51HP, OR4A16	rs10459012-?	NR	1E-8		0.02215	[0.015-0.03] unit increase novel	Illumina [6108953] (imputed)	N
1005	chr11	55095201	55095202	rs77584654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q11		rs77584654-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1005	chr11	55095201	55095202	rs77584654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q11		rs77584654-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1005	chr11	55111499	55111500	rs117538213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs117538213-C	0.0384121	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1005	chr11	55112642	55112643	rs11229165	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11q11	OR4A16	rs11229165-T	0.87	2E-11				Affymetrix, Illumina [8002429] (imputed)	N
1005	chr11	55125646	55125647	rs11229231	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q11	NR	rs11229231-G	0.685061	3E-12				Affymetrix, Illumina [17210439] (imputed)	N
1005	chr11	55125646	55125647	rs11229231	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q11	NR	rs11229231-G	0.688147	8E-15		0.016057	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1005	chr11	55126516	55126517	rs7118132	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q11	OR4A15	rs7118132-T	0.2272	1E-9		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1005	chr11	55126516	55126517	rs7118132	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11q11	OR4A15	rs7118132-T	0.3272	3E-8		0.004	[0.0026-0.0054] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1005	chr11	55129639	55129640	rs11229252	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q11	NR	rs11229252-C	0.888958	6E-15		0.0257015	[0.019-0.032] unit increase	NR [NR]	N
1005	chr11	55129639	55129640	rs11229252	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11q11	OR4A15	rs11229252-T	0.109453	1E-8		0.07172291	[0.047-0.096] unit decrease	Affymetrix [7288503] (imputed)	N
1005	chr11	55129639	55129640	rs11229252	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q11	OR4A15	rs11229252-T	0.0986	7E-9		0.3524	[0.23-0.47] mmHg decrease	Affymetrix [NR] (imputed)	N
1005	chr11	55136218	55136219	rs7927370	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	11q11	OR4A15	rs7927370-?	0.94	7E-6	(anti-dsDNA -)	1.92	[1.45-2.56]	Illumina [421318] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	1E-8		0.0491503	[0.032-0.066] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	1E-8		0.0507389	[0.033-0.068] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	2E-8		0.0490997	[0.032-0.066] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	2E-8		0.0497976	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q11		rs76257475-G	0.95095	2E-9		0.0525173	[0.035-0.07] unit increase	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	3E-8		0.049607	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	4E-8		0.0474538	[0.03-0.064] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55147347	55147348	rs76257475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q11		rs76257475-G	0.950946	4E-8		0.0499038	[0.032-0.068] unit decrease	NR [11722792] (imputed)	N
1005	chr11	55148533	55148534	rs117460671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q11	NR	rs117460671-A	NR	5E-11		0.0513	[0.036-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1005	chr11	55164176	55164177	rs118154365	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	11q11		rs118154365-?	0.08854	2E-6		9.953		Affymetrix [NR]	N
1005	chr11	55166019	55166020	rs117273915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q11		rs117273915-T	NR	9E-10		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1006	chr11	55194526	55194527	rs2212339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q11	NR	rs2212339-A	NR	3E-19		0.0328	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1006	chr11	55194526	55194527	rs2212339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q11	NR	rs2212339-A	NR	2E-31		0.0444	[0.037-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1006	chr11	55194526	55194527	rs2212339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q11	NR	rs2212339-A	NR	1E-11		0.0248	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr11	55194526	55194527	rs2212339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q11	NR	rs2212339-A	NR	1E-16		0.0316	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1006	chr11	55204801	55204802	rs11229654	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q11	NR	rs11229654-?	NR	3E-6				Affymetrix [NR]	N
1006	chr11	55212233	55212234	rs11229691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q11	NR	rs11229691-A	0.107753	3E-10		0.018821	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1006	chr11	55265316	55265317	rs1944859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q11		rs1944859-A	NR	8E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1006	chr11	55274793	55274794	rs11602661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q11	NR	rs11602661-G	NR	8E-10		0.0277	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr11	55306150	55306151	rs526821	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	11q11	NR	rs526821-C	0.437	1E-6		0.179237	[0.11-0.25] unit increase	Illumina [~ 6600000] (imputed)	N
1006	chr11	55309821	55309822	rs568442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q11		rs568442-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1007	chr11	55312532	55312533	rs1459104	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q11	OR4C15	rs1459104-A	0.114	3E-6	(EA, men)	0.03	[0.018-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1007	chr11	55314491	55314492	rs76154806	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q11	OR4A15, OR4C15	rs76154806-T	0.8709	1E-11		0.14	[0.099-0.181] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1007	chr11	55324307	55324308	rs12226802	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11q11		rs12226802-A	0.873	4E-7	(EA)	0.0098	[0.0061-0.0135] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1007	chr11	55351006	55351007	rs11525445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q11		rs11525445-T	NR	3E-13		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1007	chr11	55351006	55351007	rs11525445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q11		rs11525445-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1007	chr11	55355181	55355182	rs74237369	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q11	OR4C16, OR4C11	rs74237369-G		4E-7		0.423	unit increase	Affymetrix [at least 2696785] (imputed)	N
1007	chr11	55355181	55355182	rs74237369	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q11	OR4C16, OR4C11	rs74237369-G		1E-6	(EA)	0.445	unit increase	Affymetrix [at least 2696785] (imputed)	N
1007	chr11	55355181	55355182	rs74237369	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q11	OR4C16, OR4C11	rs74237369-G		5E-8		0.315	unit increase	Affymetrix [at least 2696785] (imputed)	N
1007	chr11	55355181	55355182	rs74237369	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q11	OR4C16, OR4C11	rs74237369-G		4E-6		0.162	unit increase	Affymetrix [at least 2696785] (imputed)	N
1007	chr11	55392894	55392895	rs111439397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q11		rs111439397-G	NR	1E-13		0.0263	[0.019-0.033] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1007	chr11	55415617	55415618	rs11230523	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q11	OR4P4, OR4S2	rs11230523-C	0.8434	3E-13		0.15	[0.11-0.19] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q11	OR4C6, OR5D13	rs11230661-A	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q11	OR4C6, OR5D13	rs11230661-A	NR	1E-16				Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q11	OR4C6, OR5D13	rs11230661-A	NR	8E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q11	OR4C6, OR5D13	rs11230661-A	NR	1E-17				Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q11	OR4C6, OR5D13	rs11230661-A	NR	7E-10	(EA)	0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q11	OR4C6, OR5D13	rs11230661-A	NR	2E-10		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55451312	55451313	rs11230661	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q11	OR4C6, OR5D13	rs11230661-A	NR	6E-6		0.008499	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1008	chr11	55468387	55468388	rs78816858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q11	NR	rs78816858-T	NR	7E-12		0.0259	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr11	55492763	55492764	rs7104561	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q11	RP11-674C21.9	rs7104561-C	0.0990312	5E-8		0.054952636	[0.035-0.075] unit increase	Affymetrix [7288503] (imputed)	N
1008	chr11	55504064	55504065	rs17500359	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q11		rs17500359-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1008	chr11	55537045	55537046	rs4617614	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	11q11	NR	rs4617614-C	NR	3E-8		5.54	z score increase	NR [9015039] (imputed)	N
1008	chr11	55541283	55541284	rs11230983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q11	NR	rs11230983-A	NR	1E-19		0.033	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr11	55541283	55541284	rs11230983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q11	NR	rs11230983-A	NR	7E-31		0.0439	[0.036-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1008	chr11	55541283	55541284	rs11230983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q11	NR	rs11230983-A	NR	2E-11		0.0244	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1008	chr11	55541283	55541284	rs11230983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q11	NR	rs11230983-A	NR	3E-16		0.0312	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1009	chr11	55587456	55587457	rs11231180	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	11q12.1		rs11231180-?	0.08333	6E-7		12.53		Affymetrix [NR]	N
1009	chr11	55588215	55588216	rs116861182	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q12.1	NR	rs116861182-C	0.0549	6E-9		0.0637	[0.042-0.085] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1009	chr11	55588215	55588216	rs116861182	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q12.1	NR	rs116861182-C	0.0534	5E-9		0.0615	[0.041-0.082] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1009	chr11	55601015	55601016	rs17148127	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q12.1	OR5L2, OR5D16	rs17148127-?	NR	2E-10		0.023908678	[0.017-0.031] unit increase	Illumina [27896057] (imputed)	N
1009	chr11	55606207	55606208	rs12361036	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	11q12.1	OR5D16	rs12361036-A	0.09	6E-6		0.13	unit decrease	Affymetrix [5396780] (imputed)	N
1009	chr11	55606692	55606693	rs6591700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs6591700-A	NR	6E-13		0.026	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr11	55606692	55606693	rs6591700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q12.1	NR	rs6591700-A	NR	2E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1009	chr11	55644733	55644734	rs11231420	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	11q12.1	TRIM51, LOC100507561	rs11231420-T	0.68	5E-6		1.6393442		Affymetrix [at least 730985] (imputed)	N
1009	chr11	55651657	55651658	rs28609353	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	11q12.1	TRIM51	rs28609353-?	NR	4E-6		2.1285653	[1.55-2.93]	Illumina [5407269] (imputed)	N
1009	chr11	55684027	55684028	rs12363672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q12.1		rs12363672-C	NR	3E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1009	chr11	55684027	55684028	rs12363672	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q12.1	OR5W2	rs12363672-A	0.973835	3E-8		0.0238392	[0.015-0.032] unit decrease	Affymetrix [12370749]	N
1009	chr11	55701660	55701661	rs7936124	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7936124-C	0.659006	2E-9		0.0547576	[0.036-0.074] increase	Affymetrix [11014269] (imputed)	N
1010	chr11	55721678	55721679	rs17599071	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q12.1	NR	rs17599071-?	NR	7E-13				Affymetrix [NR]	N
1010	chr11	55721710	55721711	rs11231675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q12.1		rs11231675-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1010	chr11	55723014	55723015	rs1011298282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11q12.1		rs1011298282-G	0.005726	8E-9		0.184756	[0.12-0.25] unit increase	Illumina [13465896] (imputed)	N
1010	chr11	55753914	55753915	rs182996269	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.1	OR7E5P	rs182996269-T	0.0877	2E-9		0.4017	[0.27-0.53] mmHg decrease	Affymetrix [NR] (imputed)	N
1011	chr11	55839250	55839251	rs139040781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs139040781-C	NR	6E-10		0.0905	[0.062-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr11	55862090	55862091	rs2945816	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	11q12.1	OR812	rs2945816-?	NR	2E-8	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1011	chr11	55871267	55871268	rs117292441	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q12.1	OR8H2	rs117292441-T	0.0125	3E-10		0.0544	[0.037-0.071] unit increase	Affymetrix [18391927] (imputed)	N
1011	chr11	55889894	55889895	rs61751933	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q12.1	OR8H3	rs61751933-C	0.8757	2E-11		0.14	[0.098-0.182] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1011	chr11	55895744	55895745	rs2220004	23910658	McRae JF	2013-07-31	Curr Biol	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (&beta;-damascenone)	187 European ancestry individuals	89 European ancestry individuals	11q12.1	OR5BN1P	rs2220004-?		2E-7		5.51	[NR] unit increase	Affymetrix [619656]	N
1011	chr11	55959646	55959646	rs369532258	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q12.1	OR5J2, OR5T2	rs369532258-T	0.4695	3E-12		0.099	[0.071-0.127] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1012	chr11	55995735	55995736	rs11227582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q12.1	OR5T2	rs11227582-C	0.876105	3E-24		0.0302946	[0.024-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1012	chr11	56000599	56000600	rs3919907	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	11q12.1	OR5T2	rs3919907-T	0.05	6E-6	(African American)	0.39	0.22-0.55 unit increase	Illumina [NR] (imputed)	N
1012	chr11	56019924	56019925	rs17150243	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q12.1	OR5T3	rs17150243-C	0.158	9E-6	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1012	chr11	56021283	56021284	rs10501349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q12.1	NR	rs10501349-A	NR	4E-18		0.0321	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1012	chr11	56021283	56021284	rs10501349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs10501349-A	NR	3E-31		0.0447	[0.037-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1012	chr11	56021283	56021284	rs10501349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q12.1	NR	rs10501349-A	NR	4E-10		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr11	56021283	56021284	rs10501349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q12.1	NR	rs10501349-A	NR	2E-16		0.0318	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1012	chr11	56034586	56034587	rs12421131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q12.1		rs12421131-A	0.890652	1E-8		0.0333084	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
1012	chr11	56036786	56036787	rs11227719	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs11227719-?		6E-6				Illumina [~ 5140000] (imputed)	N
1012	chr11	56053828	56053829	rs17150276	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs17150276-?		5E-6				Illumina [~ 5140000] (imputed)	N
1012	chr11	56057418	56057419	rs17150286	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs17150286-?		9E-6				Illumina [~ 5140000] (imputed)	N
1012	chr11	56073555	56073556	rs150762626	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine without aura	27 Taiwanese ancestry cases, 142 Taiwanese ancestry controls	NA	11q12.1	intergenic	rs150762626-C	0.05282	7E-7		6.277	NR	Affymetrix [710525]	N
1013	chr11	56122056	56122057	rs2128133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs2128133-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1013	chr11	56132060	56132061	rs4939034	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q12.1	NR	rs4939034-T	0.126103	2E-12		0.0214359	[0.015-0.027] unit decrease	NR [NR]	N
1013	chr11	56143714	56143715	rs78460947	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs78460947-G	NR	2E-14		0.0503	[0.037-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1013	chr11	56156770	56156771	rs11228212	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.1	OR8U1	rs11228212-C	0.876112	6E-45		0.0406868	[0.035-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr11	56175670	56175671	rs1945213	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	11q12.1	OR8U8	rs1945213-G	0.69	4E-8	(ETV6-RUNX1 positive)	1.2820514	[1.14-1.45]	Affymetrix [355750]	N
1013	chr11	56175670	56175671	rs1945213	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	11q12.1	OR8U8	rs1945213-G	0.69	3E-8		1.2987013	[1.19-1.43]	Affymetrix [355750]	N
1013	chr11	56175670	56175671	rs1945213	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	11q12.1	OR8U8	rs1945213-C	0.31	9E-11	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	2E-8		0.0311496	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	7E-9		0.0326486	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123098	4E-8		0.0307205	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	4E-9		0.0329478	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	4E-8		0.0303706	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	4E-9		0.0323853	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	9E-9		0.0319705	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	9E-9		0.0325324	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1013	chr11	56176003	56176004	rs1945211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q12.1		rs1945211-A	0.123096	1E-8		0.0317485	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
1013	chr11	56191392	56191393	rs11228326	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs11228326-?		2E-6				Illumina [~ 5140000] (imputed)	N
1013	chr11	56201709	56201711	rs35146027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q12.1		rs35146027-A	NR	5E-9		0.0199	[0.013-0.027] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1013	chr11	56201709	56201711	rs35146027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11q12.1		rs35146027-A	NR	4E-15		0.0271	[0.02-0.034] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1013	chr11	56201709	56201709	rs140628616	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q12.1	OR5R1	rs140628616-A	0.16585	2E-8		0.0528712	[0.034-0.071] unit decrease	Affymetrix [9463307] (imputed)	N
1014	chr11	56238355	56238356	rs143344227	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q12.1	NR	rs143344227-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1014	chr11	56241189	56241190	rs582939	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs582939-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56242260	56242261	rs7939886	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q12.1	intergenic	rs7939886-?	0.906	2E-7			[NR]	Affymetrix, Illumina [152234]	N
1014	chr11	56245234	56245235	rs603926	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs603926-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56250123	56250124	rs676794	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs676794-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56251233	56251234	rs594854	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs594854-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56260688	56260689	rs669501	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs669501-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56260961	56260962	rs2511145	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs2511145-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56263111	56263112	rs638436	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs638436-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56263111	56263112	rs638436	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs638436-?		1E-6				Illumina [~ 5140000] (imputed)	N
1014	chr11	56263117	56263118	rs638452	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs638452-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56263117	56263118	rs638452	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs638452-?		1E-6				Illumina [~ 5140000] (imputed)	N
1014	chr11	56272113	56272114	rs597045	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q12.1	OR8U8	rs597045-A	0.6945	6E-11		0.0106	[0.0075-0.0137] unit increase	Affymetrix [~ 7740000] (imputed)	N
1014	chr11	56272646	56272647	rs652106	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs652106-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56272646	56272647	rs652106	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs652106-?		2E-6				Illumina [~ 5140000] (imputed)	N
1014	chr11	56272826	56272827	rs610410	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs610410-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1014	chr11	56301100	56301101	rs13377553	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q12.1	NR	rs13377553-?	NR	2E-7				Affymetrix [NR]	N
1014	chr11	56306852	56306853	rs2187511	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Body mass index	40 Korean ancestry low BMI individuals, 37 Korean ancestry high BMI individuals	NA	11q12.1	OR8U8	rs2187511-G	0.282	1E-6				Affymetrix [at least 710679] (imputed)	N
1014	chr11	56306852	56306853	rs2187511	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Basal metabolic rate	39 Korean ancestry low BMR individuals, 38 Korean ancestry high BMR individuals	NA	11q12.1	OR8U8	rs2187511-G	0.283	1E-6				Affymetrix [at least 710315] (imputed)	N
1014	chr11	56311089	56311090	rs1080800	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs1080800-?		4E-6				Illumina [~ 5140000] (imputed)	N
1014	chr11	56316073	56316074	rs12787983	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs12787983-?		4E-6				Illumina [~ 5140000] (imputed)	N
1014	chr11	56334157	56334158	rs1945279	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs1945279-?		5E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56365406	56365407	rs11228672	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs11228672-?		1E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56371756	56371757	rs1397050	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs1397050-?		7E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56386395	56386396	rs116916700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs116916700-A	0.0457922	9E-11				Affymetrix, Illumina [24588908] (imputed)	N
1015	chr11	56387721	56387722	rs78876220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs78876220-C	NR	3E-9		0.0469	[0.031-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1015	chr11	56390284	56390285	rs10896497	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs10896497-?		3E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56393649	56393650	rs1355242	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs1355242-?		4E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56406967	56406968	rs906956	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs906956-?		4E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56406967	56406968	rs906956	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q12.1	NR	rs906956-?		4E-6				Illumina [~ 5140000] (imputed)	N
1015	chr11	56409602	56409603	rs11606499	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q12.1	OR5AP2	rs11606499-C	0.8673	5E-9		0.1223	[0.082-0.163] unit increase	Affymetrix [~ 11900000] (imputed)	N
1015	chr11	56440235	56440236	rs11228719	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	11q12.1	NR	rs11228719-?	NR	4E-6	(CP)	1.64	[1.32-2.04]	Illumina [NR]	N
1015	chr11	56463468	56463468	rs146200153	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q12.1	OR5AR1, OR9G9	rs146200153-G	0.8787	7E-9		0.122	[0.08-0.164] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1015	chr11	56466098	56466099	rs1397048	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	11q12.1	OR5AR1, OR9G1, OR9G4, OR5AP2	rs1397048-?	0.4	7E-8	(MCH)			Affymetrix [70897]	N
1015	chr11	56468693	56468694	rs79060400	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	11q12.1	OR9G1, OR9G9	rs79060400-?		2E-6				Illumina [301908]	N
1015	chr11	56470263	56470264	rs11228737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11q12.1		rs11228737-G	NR	1E-8		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1015	chr11	56474140	56474141	rs7113096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q12.1		rs7113096-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1015	chr11	56480181	56480182	rs4312081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs4312081-C	0.120407	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1015	chr11	56481043	56481044	rs187858337	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q12.1	OR8U8	rs187858337-T	0.991	5E-6	(AA)	0.165	NR unit increase	Illumina [NR] (imputed)	N
1016	chr11	56501326	56501327	rs11606791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.1		rs11606791-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1016	chr11	56556459	56556460	rs1789001	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	11q12.1	OR9G4	rs1789001-A	NR	7E-7	(Cases)	0.079	[0.032-0.126] unit increase	Illumina [6900000] (imputed)	N
1017	chr11	56628085	56628086	rs77916918	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.1	OR9G4	rs77916918-G	0.965751	7E-10		0.0321839	[0.022-0.042] unit decrease	Affymetrix [NR] (imputed)	N
1017	chr11	56645137	56645138	rs1783451	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	11q12.1		rs1783451-C	0.408989	2E-6		0.00894407	[0.0039-0.014] unit increase	Illumina [7666802] (imputed)	N
1017	chr11	56694503	56694504	rs183430607	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FADS2P1	rs183430607-?	NR	3E-8	(female)	1.47687	[NR] unit increase	Affymetrix [NR] (imputed)	N
1017	chr11	56697102	56697103	rs11605930	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q12.1	OR5AK2	rs11605930-T	0.0324756185482612	7E-6	(F_Sutterellaceae_HB)	0.976188	[0.55-1.4] unit decrease	Illumina [7711310] (imputed)	N
1017	chr11	56701514	56701515	rs139913353	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11q12.1	OR5AK2	rs139913353-T	0.98773	5E-13		1.248	[0.91-1.59] unit decrease	Affymetrix [8590397] (imputed)	N
1017	chr11	56744629	56744629	rs142865693	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression x maternal smoking during pregnancy interaction	2,310 cases, 4,539 controls	NA	11q12.1	NR	rs142865693-?	NR	5E-8	(Dominant model)			Affymetrix [NR] (imputed)	N
1017	chr11	56744629	56744629	rs142865693	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression x maternal smoking during pregnancy interaction	2,310 cases, 4,539 controls	NA	11q12.1	NR	rs142865693-?	NR	2E-7	(Additive model)			Affymetrix [NR] (imputed)	N
1017	chr11	56744629	56744629	rs142865693	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression	2,310 cases, 4,539 controls	NA	11q12.1	NR	rs142865693-?	NR	4E-6	(Dominant model)			Affymetrix [NR] (imputed)	N
1018	chr11	56764851	56764852	rs12420271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.1	NR	rs12420271-G	NR	3E-9		0.0428	[0.029-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1018	chr11	56790185	56790186	rs117734071	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q12.1	NR	rs117734071-?	NR	3E-8				Illumina [7760689] (imputed)	N
1018	chr11	56793877	56793878	rs78310129	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	11q12.1	OR5AK2	rs78310129-C	0.988	5E-8		0.768	[0.49-1.04] unit decrease	Affymetrix [8590397] (imputed)	N
1018	chr11	56823249	56823250	rs17151564	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Provencibacterium massiliense abundance in stool	5,959 Finnish ancestry individuals	NA	11q12.1		rs17151564-T	0.153123	2E-8		0.0632311	[0.041-0.085] unit increase	Illumina [7980478] (imputed)	N
1018	chr11	56823249	56823250	rs17151564	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Provencibacterium abundance in stool	5,959 Finnish ancestry individuals	NA	11q12.1		rs17151564-T	0.153123	3E-8		0.0683946	[0.044-0.092] unit increase	Illumina [7980478] (imputed)	N
1018	chr11	56852097	56852098	rs553086	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	11q12.1	NR	rs553086-A	0.23	3E-6		0.92	unit increase	Illumina [8591557] (imputed)	N
1018	chr11	56883267	56883268	rs1941043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q12.1		rs1941043-G	NR	2E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1019	chr11	56886866	56886867	rs2000737	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	11q12.1	LOC101927120, LRRC55	rs2000737-C	0.1	3E-6	(Tangent line angle of el4)	0.017	[NR] unit increase	Affymetrix [311944]	N
1019	chr11	56904253	56904254	rs142782777	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	11q12.1		rs142782777-G	0.13	3E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1019	chr11	56904364	56904365	rs7112639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q12.1		rs7112639-G	NR	4E-8		0.0307	[0.02-0.042] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1019	chr11	56908955	56908956	rs483450	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q12.1	Intergenic	rs483450-C	0.5293	3E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1019	chr11	56909310	56909311	rs72915955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q12.1		rs72915955-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1019	chr11	56914156	56914157	rs6591407	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q12.1	NA	rs6591407-A	0.1984	4E-9		0.0124	[0.0083-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1019	chr11	56925540	56925541	rs72915971	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	11q12.1	NR	rs72915971-?	0.02	5E-7		2.16	[1.60-2.91]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1019	chr11	56925540	56925541	rs72915971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q12.1		rs72915971-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1019	chr11	56947467	56947468	rs117084494	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q12.1	NR	rs117084494-?	NR	6E-6		0.0076009	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
1019	chr11	56951764	56951765	rs567766	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q12.1		rs567766-A	0.17	6E-12		6.87	z score increase	Affymetrix [9061022] (imputed)	N
1019	chr11	56964223	56964224	rs10896581	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.1	LRRC55	rs10896581-G	0.878793	5E-10		0.0181347	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
1019	chr11	57014756	57014757	rs2511030	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q12.1		rs2511030-A	0.692	3E-9				Affymetrix [10369434] (imputed)	N
1020	chr11	57020089	57020090	rs625565	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.1	TNKS1BP1	rs625565-?	NR	9E-6	(SM 18:1)	0.16130012	[0.09-0.233] unit increase	Affymetrix [at least 2500000] (imputed)	N
1020	chr11	57053997	57053998	rs36090449	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q12.1	TNKS1BP1	rs36090449-G	0.955292	9E-13		0.0340035	[0.025-0.043] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr11	57055895	57055896	rs112715224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.1		rs112715224-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1020	chr11	57057636	57057636	rs71470264	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.1		rs71470264-?	NR	5E-10		0.0312403	[0.021-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
1020	chr11	57073769	57073769	rs375548795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q12.1	TNKS1BP1	rs375548795-AAAAAG	0.250531	4E-12		0.018001122	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr11	57076523	57076524	rs151252290	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11q12.1	TNKS1BP1	rs151252290-C	0.98146	2E-6		0.7143	[0.42-1.01] unit decrease	Affymetrix [8590397] (imputed)	N
1020	chr11	57095081	57095082	rs7129491	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	11q12.1	NR	rs7129491-G	NR	1E-6		0.138	[0.083-0.193] unit decrease	Illumina [6319684] (imputed)	N
1020	chr11	57103683	57103684	rs61888888	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	11q12.1	NR	rs61888888-?	NR	2E-14				Affymetrix, Illumina [6211246] (imputed)	N
1020	chr11	57107616	57107617	rs11603691	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	11q12.1	NR	rs11603691-G	NR	3E-6		0.133	[0.078-0.188] unit decrease	Illumina [6319684] (imputed)	N
1020	chr11	57107616	57107617	rs11603691	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	11q12.1	P2RX3	rs11603691-A	NR	4E-10		1.7857143	[1.33-2.38]	Affymetrix [~ 8000000] (imputed)	N
1020	chr11	57109372	57109373	rs10896609	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	11q12.1	P2RX3	rs10896609-?	NR	9E-6		0.646	[0.28-1.01] unit increase	Illumina [at least 13000000] (imputed)	N
1020	chr11	57111395	57111396	rs55637147	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	11q12.1	NR	rs55637147-C	0.4057	4E-14		0.2404	[0.18-0.3] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
1020	chr11	57111395	57111396	rs55637147	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	11q12.1	P2RX3	rs55637147-?	NR	5E-6		0.12	[0.046-0.194] unit increase	Illumina [at least 13000000] (imputed)	N
1020	chr11	57118201	57118202	rs200854727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cardiac valvular disease	25,070 European ancestry cases, 440,457 European ancestry controls, 1,995 East Asian ancestry cases, 176,731 East Asian ancestry controls	NA	11q12.1		rs200854727-C	NR	2E-8		2.2448	[1.46-3.03] unit increase	Affymetrix, Illumina [25842568] (imputed)	N
1020	chr11	57119155	57119156	rs10792091	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q12.1	P2RX3	rs10792091-T	0.860344	8E-10		0.0176378	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr11	57131569	57131570	rs74628114	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q12.1	P2RX3	rs74628114-C	0.0734	6E-9		0.04051373	[0.027-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1020	chr11	57137808	57137809	rs116897257	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11q12.1	P2RX3	rs116897257-C	0.9769	3E-6		0.6373	[0.37-0.91] unit decrease	Affymetrix [8590397] (imputed)	N
1020	chr11	57144355	57144356	rs115707133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	11q12.1		rs115707133-T	0.030923	1E-16		0.106008	[0.081-0.131] unit decrease	Illumina [13470073] (imputed)	N
1020	chr11	57144355	57144356	rs115707133	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	11q12.1	NR	rs115707133-G	0.970192	8E-13		0.101267	[0.074-0.129] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1020	chr11	57146224	57146225	rs34108746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q12.1		rs34108746-G	NR	4E-21		0.0309	[0.024-0.037] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1020	chr11	57146224	57146225	rs34108746	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11q12.1		rs34108746-A	0.922	2E-9				Affymetrix [10369434] (imputed)	N
1020	chr11	57146224	57146225	rs34108746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q12.1	PRG3	rs34108746-G	0.077261	2E-15		0.03350057	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr11	57146224	57146225	rs34108746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q12.1	PRG3	rs34108746-G	0.0772810000000001	5E-14		0.031776108	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr11	57146224	57146225	rs34108746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q12.1		rs34108746-?	NR	3E-48				NR [~ 8900000] (imputed)	N
1021	chr11	57148105	57148106	rs764568652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11q12.1		rs764568652-G	NR	3E-25		65.2614	[52.92-77.6] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
1021	chr11	57157404	57157405	rs490358	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	11q12.1		rs490358-A	0.28	4E-190		0.3336	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1021	chr11	57159774	57159774	rs10642232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q12.1	NR	rs10642232-I	0.729422	7E-26		0.024245	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1021	chr11	57170998	57170999	rs140000161	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q12.1	intergenic	rs140000161-A	0.91	1E-16		0.37	unit decrease	Illumina [5270624] (imputed)	N
1021	chr11	57173432	57173433	rs11229023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q12.1	RP11-872D17.8	rs11229023-G	0.271302	1E-10		0.0189353	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr11	57173432	57173433	rs11229023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q12.1	RP11-872D17.8	rs11229023-G	0.271276	7E-10		0.015471471	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr11	57174558	57174559	rs7124	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q12.1	PRG2	rs7124-?	NR	8E-6	(MCRI)	8.24	[4.69-11.79] unit increase	Illumina [693128]	N
1021	chr11	57175992	57175993	rs3781888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q12.1	RP11-872D17.8, SLC43A3	rs3781888-C	0.27013	2E-11		0.017065093	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr11	57175992	57175993	rs3781888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q12.1	RP11-872D17.8, SLC43A3	rs3781888-C	0.270139	1E-15		0.020268742	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr11	57176627	57176628	rs2241899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs2241899-T	0.274309	2E-23				Affymetrix, Illumina [19872809] (imputed)	N
1021	chr11	57195236	57195237	rs17151908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q12.1	RP11-872D17.8, SLC43A3	rs17151908-G	0.200292	1E-11		0.019781586	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr11	57195916	57195917	rs11822910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	11q12.1	SLC43A3, RP11-872D17.8	rs11822910-A	0.2182	1E-11		0.02957161	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1021	chr11	57199644	57199645	rs4529894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q12.1	SLC43A3	rs4529894-G	0.216925	8E-26		0.02879034	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1021	chr11	57203008	57203009	rs11229030	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	11q12.1		rs11229030-T	0.61	1E-20		0.0907	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1021	chr11	57203008	57203009	rs11229030	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	11q12.1	SLC43A3, PRG2, PRG3	rs11229030-C	0.305	8E-9		1.15	[1.10-1.39]	Affymetrix, Illumina [1060934] (imputed)	N
1021	chr11	57203383	57203384	rs182187235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q12.1		rs182187235-T	NR	2E-8		0.0365	[0.024-0.049] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1021	chr11	57203383	57203384	rs182187235	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q12.1	RTN4RL2	rs182187235-T	0.036	4E-10		0.0198	[0.014-0.026] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1021	chr11	57211645	57211646	rs2729389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	11q12.1		rs2729389-A	0.256448	4E-9		0.0282298	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1021	chr11	57235408	57235409	rs61745214	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	11q12.1	RTN4RL2	rs61745214-T	0.362	8E-12		0.051		Illumina [243345]	N
1021	chr11	57250025	57250026	rs78853063	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	11q12.1	RTN4RL2, SLC43A1	rs78853063-C	0.924710242	5E-7		1.1254505	[1.07-1.18]	Illumina [10439017] (imputed)	N
1021	chr11	57259693	57259694	rs10750864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	11q12.1		rs10750864-T	0.258119	2E-34		0.0584223	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
1021	chr11	57260034	57260048	rs201960633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q12.1		rs201960633-T	NR	2E-8		0.0203	[0.013-0.027] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1021	chr11	57262992	57262993	rs2729385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q12.1		rs2729385-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1021	chr11	57262992	57262993	rs2729385	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	11q12.1	NR	rs2729385-G		4E-6		0.1231	[0.072-0.174] SD units decrease	NR [10700000] (imputed)	N
1021	chr11	57271003	57271004	rs11229043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q12.1	Intergenic	rs11229043-C	0.8687	2E-11		0.0193	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1021	chr11	57271003	57271004	rs11229043	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q12.1	Intergenic	rs11229043-T	0.1314	5E-8	(MTAG)	0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr11	57283055	57283056	rs2649666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q12.1	NR	rs2649666-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1022	chr11	57309609	57309610	rs534903026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q12.1		rs534903026-A	NR	3E-8		0.0204	[0.013-0.028] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1022	chr11	57329465	57329466	rs12364489	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q12.1	NR	rs12364489-T	NR	3E-8		5.562	z score decrease	Affymetrix [10847151] (imputed)	N
1022	chr11	57337735	57337736	rs138396859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs138396859-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1022	chr11	57355969	57355970	rs2729354	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q12.1	SLC43A1, SMTNL1, UBE2L6, RPS4XP13	rs2729354-A	0.2004028	8E-14	(EA, Plasma protease C1 inhibitor)	0.4098	[0.3-0.52] unit increase	Affymetrix [509946]	N
1022	chr11	57365722	57365723	rs28362944	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q12.1	SERPING1	rs28362944-G	0.022	9E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1022	chr11	57369729	57369730	rs11229063	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DVL2	5,357 Icelandic ancestry individuals	NA	11q12.1		rs11229063-A	0.2456	3E-16		0.177457	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1022	chr11	57369729	57369730	rs11229063	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1R	5,362 Icelandic ancestry individuals	NA	11q12.1		rs11229063-A	0.2456	6E-52		0.329636	[0.29-0.37] unit decrease	Illumina [7506463] (imputed)	N
1022	chr11	57369729	57369730	rs11229063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q12.1		rs11229063-A	NR	1E-8		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1022	chr11	57370741	57370742	rs78364821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q12.1		rs78364821-T	NR	6E-19		0.0233	[0.018-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1022	chr11	57371191	57371192	rs76525968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q12.1		rs76525968-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1022	chr11	57371917	57371918	rs28362950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs28362950-G	0.738953	3E-37				Affymetrix, Illumina [17210439] (imputed)	N
1022	chr11	57372525	57372526	rs28362951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q12.1	SERPING1	rs28362951-G	0.267719	3E-16		0.020990534	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr11	57374331	57374332	rs11603020	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q12.1	SERPING1	rs11603020-C	0.2768844	5E-96	(Plasma protease C1 inhibitor)	0.936	[0.86-1.01] unit decrease	Affymetrix [509946]	N
1022	chr11	57376130	57376131	rs138770460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs138770460-A	0.228782	4E-23				Affymetrix, Illumina [24588908] (imputed)	N
1022	chr11	57376130	57376131	rs138770460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q12.1	NR	rs138770460-A	0.269909	2E-24		0.021054	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1022	chr11	57384518	57384519	rs34052104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q12.1	SERPING1	rs34052104-C	0.269858	7E-27		0.027522424	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr11	57391022	57391023	rs11229075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MASP1	5,365 Icelandic ancestry individuals	NA	11q12.1		rs11229075-C	0.2529	6E-14		0.165079	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1022	chr11	57391022	57391023	rs11229075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH12	5,367 Icelandic ancestry individuals	NA	11q12.1		rs11229075-C	0.2529	1E-35		0.272194	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
1022	chr11	57391022	57391023	rs11229075	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.1	SERPING1	rs11229075-C	0.261	1E-119	(Plasma protease C1 inhibitor, SERPING1.4479.14.2)	0.6	[0.54-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1022	chr11	57396824	57396825	rs7102271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs7102271-G	0.74171875	8E-29	(C1R, 3285_23_2)	0.31410298	[0.26-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57396824	57396825	rs7102271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs7102271-G	0.74171875	4E-328	(SERPING1, 13710_6_3)	1.0016209	[0.96-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
1022	chr11	57396824	57396825	rs7102271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs7102271-G	0.74171875	3E-19	(CDH12, 8329_166_3)	0.252777	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1022	chr11	57396824	57396825	rs7102271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs7102271-G	0.74171875	2E-178	(SERPING1, 4479_14_2)	0.74958706	[0.7-0.8] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57396824	57396825	rs7102271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs7102271-G	0.74171875	2E-10	(MASP1, 8091_16_3)	0.18068555	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57399071	57399072	rs11229077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q12.1	NR	rs11229077-C	0.728865	9E-40		0.02862	[0.024-0.033] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1022	chr11	57399510	57399511	rs11229080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs11229080-T	0.74171875	8E-29	(C1R, 3285_23_2)	0.31410298	[0.26-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57399510	57399511	rs11229080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs11229080-T	0.74171875	4E-328	(SERPING1, 13710_6_3)	1.0016209	[0.96-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
1022	chr11	57399510	57399511	rs11229080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs11229080-T	0.74171875	3E-19	(CDH12, 8329_166_3)	0.252777	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1022	chr11	57399510	57399511	rs11229080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs11229080-T	0.74171875	2E-178	(SERPING1, 4479_14_2)	0.74958706	[0.7-0.8] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57399510	57399511	rs11229080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	NR	rs11229080-T	0.74171875	2E-10	(MASP1, 8091_16_3)	0.18068555	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1022	chr11	57401182	57401183	rs1647396	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q12.1	AP000662.4	rs1647396-A	0.4646	4E-8		0.011148979	[0.0072-0.0151] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1022	chr11	57401399	57401400	rs73480560	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q12.1	NR	rs73480560-T	NR	2E-9		5.991	z score increase	Affymetrix [10847151] (imputed)	N
1022	chr11	57401399	57401400	rs73480560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	11q12.1	SMTNL1	rs73480560-T	0.260712	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
1022	chr11	57404778	57404779	rs10750866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q12.1	Intergenic	rs10750866-A	0.7309	9E-15	(MTAG)	0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr11	57404778	57404779	rs10750866	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q12.1	NR	rs10750866-?	NR	4E-6		4.614	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1022	chr11	57404778	57404779	rs10750866	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11q12.1	SMTNL1	rs10750866-A	0.272951	1E-11		6.78	z score decrease	NR [10847151] (imputed)	N
1023	chr11	57409537	57409538	rs1783827	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q12.1	MIR130A	rs1783827-A	0.6021	4E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1023	chr11	57409537	57409538	rs1783827	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q12.1	MIR130A	rs1783827-A	0.5692	2E-9		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1023	chr11	57411741	57411742	rs2081361	34668383	Leskela J	2021-10-20	J Am Heart Assoc	Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke.	Serum lipopolysaccharide activity	11,296 European ancestry individuals	NA	11q12.1	NR	rs2081361-C	0.7023	4E-9		0.0864	[0.058-0.115] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1023	chr11	57421456	57421457	rs7117878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q12.1		rs7117878-A	NR	5E-16		0.0191	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1023	chr11	57421456	57421457	rs7117878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q12.1	CLP1	rs7117878-A	0.321871	3E-14		0.0201941	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr11	57421456	57421457	rs7117878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q12.1	CLP1	rs7117878-A	0.321894	1E-17		0.02038221	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr11	57421456	57421457	rs7117878	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	11q12.1	NR	rs7117878-A	0.3163	8E-9		5.763	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1023	chr11	57421456	57421457	rs7117878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q12.1		rs7117878-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1023	chr11	57424039	57424040	rs10896633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q12.1		rs10896633-C	NR	2E-14		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1023	chr11	57424039	57424040	rs10896633	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q12.1	NR	rs10896633-C	0.313202569570006	1E-9		0.00856035	[0.0058-0.0113] unit increase	NR [NR]	N
1023	chr11	57431469	57431470	rs1783985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.1		rs1783985-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1023	chr11	57433326	57433327	rs527528	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	11q12.1	ZDHHC5	rs527528-?	NR	4E-11				Affymetrix [up to 9327396] (imputed)	N
1023	chr11	57433326	57433327	rs527528	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	11q12.1	ZDHHC5	rs527528-T	NR	4E-10		0.01405	unit decrease	Affymetrix [9327396] (imputed)	N
1023	chr11	57433326	57433327	rs527528	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q12.1	NR	rs527528-?		3E-12				NR [520857]	N
1023	chr11	57433326	57433327	rs527528	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	11q12.1	NR	rs527528-T	NR	7E-14		0.01856	NR unit increase	NR [7259579]	N
1023	chr11	57435210	57435211	rs11606396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q12.1	NR	rs11606396-T	0.326249	1E-24		0.020482	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1023	chr11	57435210	57435211	rs11606396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q12.1	NR	rs11606396-T	0.327317	8E-23		0.020904	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	11q12.1	ZDHHC5	rs10896636-C	0.3221	7E-14		0.01800239	[0.013-0.023] unit decrease	NR [9417325] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	11q12.1	NR	rs10896636-?		3E-9				NR [11140414]	N
1023	chr11	57448031	57448032	rs10896636	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11q12.1	NR	rs10896636-G	0.3449	3E-11		0.01281	[0.009-0.0166] unit increase	NR [8968716] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q12.1	ZDHHC5	rs10896636-C	NR	3E-9		0.010268	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q12.1		rs10896636-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q12.1	NR	rs10896636-C	NR	7E-13		7.175	z score decrease	Affymetrix [10847151] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	11q12.1	NR	rs10896636-C	NR	3E-9		5.958	z score decrease	Affymetrix [10847151] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q12.1	TMX2-CTNND1	rs10896636-C	0.336471	9E-11		6.49	z score decrease	NR [10847151] (imputed)	N
1023	chr11	57448031	57448032	rs10896636	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q12.1	BTBD18, C11orf31, CLP1, CTNND1, MED19, SERPING1, TMX2, YPEL4, ZDHHC5	rs10896636-C	0.66353	7E-11		6.523	z score decrease	Illumina [18485882] (imputed)	N
1023	chr11	57449482	57449483	rs7124804	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q12.1	NR	rs7124804-A	NR	4E-8		5.489	z score decrease	Affymetrix [10847151] (imputed)	N
1023	chr11	57450719	57450720	rs488769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs488769-C	0.295653	5E-23				Affymetrix, Illumina [24246363] (imputed)	N
1023	chr11	57450719	57450720	rs488769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs488769-C	0.292869	3E-21				Affymetrix, Illumina [20825802] (imputed)	N
1023	chr11	57456245	57456245	rs550907743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q12.1		rs550907743-GT	NR	8E-9		0.177	[0.12-0.24] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1023	chr11	57463499	57463500	rs1783978	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.1		rs1783978-T	0.4434	2E-11	(conditional-joint)	0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr11	57467034	57467035	rs11604333	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q12.1	NR	rs11604333-G	0.321224362296017	4E-13		0.0071451203	[0.0052-0.0091] unit increase	NR [NR]	N
1023	chr11	57467034	57467035	rs11604333	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q12.1	NR	rs11604333-G	0.321224362296017	5E-13		0.011700453	[0.0085-0.0149] unit increase	NR [NR]	N
1023	chr11	57467034	57467035	rs11604333	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q12.1	NR	rs11604333-G	0.321224362296017	6E-13		0.0074086282	[0.0054-0.0094] unit increase	NR [NR]	N
1023	chr11	57470187	57470188	rs7479922	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q12.1		rs7479922-A	0.44	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	6E-9	(140 ms)	0.0338989	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	6E-10	(122 ms)	0.034387	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	5E-8	(136 ms)	0.0299631	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	4E-8	(84 ms)	0.0305509	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	3E-8	(114 ms)	0.0310807	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	3E-8	(100 ms)	0.031274	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	2E-9	(102 ms)	0.0333604	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	2E-8	(144 ms)	0.0316374	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	2E-8	(120 ms)	0.032162	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	2E-8	(116 ms)	0.0312821	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	2E-8	(104 ms)	0.031387	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57470187	57470188	rs7479922	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.1	ZDHHC5, MED19, TMX2, TMX2-CTNND1	rs7479922-A	0.447926	1E-8	(138 ms)	0.033427	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr11	57477824	57477825	rs56406844	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	11q12.1	NR	rs56406844-C		6E-6		0.1429	[0.081-0.205] SD units decrease	NR [10700000] (imputed)	N
1023	chr11	57479731	57479732	rs141274831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q12.1	MED19, TMX2, TMX2-CTNND1	rs141274831-C	0.282451	1E-10		0.01665921	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr11	57480622	57480623	rs576859	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	11q12.1	TMX2	rs576859-A	0.3272	1E-8		5.67	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1023	chr11	57484659	57484660	rs7129727	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11q12.1	BTBD18, C11orf31, CLP1, CTNND1, MED19, MIR130A, SERPING1, TMX2, TMX2-CTNND1, YPEL4, ZDHHC5	rs7129727-?	NR	1E-9		1.0649627	[1.04-1.09]	Illumina [8000000] (imputed)	N
1023	chr11	57484659	57484660	rs7129727	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q12.1	BTBD18, C11orf31, CLP1, CTNND1, MED19, MIR130A, SERPING1, TMX2, TMX2-CTNND1, YPEL4, ZDHHC5	rs7129727-A		5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1023	chr11	57486502	57486505	rs148134883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q12.1		rs148134883-T	NR	1E-8		0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1023	chr11	57488493	57488493	rs397740339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q12.1		rs397740339-GT	NR	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1023	chr11	57491371	57491372	rs2911727	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	11q12.1	NR	rs2911727-T	0.548943	5E-10		1.006	[1.004, 1.007]	Affymetrix [39302896] (imputed)	N
1023	chr11	57496819	57496820	rs11607056	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q12.1	NR	rs11607056-T	0.321125266629361	1E-10		0.009177176	[0.0064-0.012] unit increase	NR [NR]	N
1023	chr11	57497846	57497847	rs12790196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q12.1	Intergenic	rs12790196-T	0.3241	1E-33	(MTAG)	0.0214	[0.018-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1023	chr11	57497846	57497847	rs12790196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.1		rs12790196-T	0.3263	3E-11		0.0101	[0.0072-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr11	57497846	57497847	rs12790196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q12.1	Intergenic	rs12790196-T	0.3263	5E-18	(MTAG)	0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1023	chr11	57510293	57510294	rs9420	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q12.1	NR	rs9420-?	NR	7E-9		1.05834	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1023	chr11	57510293	57510294	rs9420	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q12.1	NR	rs9420-?	NR	7E-8				Illumina [up to 5582932] (imputed)	N
1023	chr11	57510293	57510294	rs9420	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q12.1	TMX2-CTNND1	rs9420-A	NR	4E-7	(EA)	1.0599	[1.04-1.08]	Illumina [6627481] (imputed)	N
1023	chr11	57510293	57510294	rs9420	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q12.1	TMX2-CTNND1	rs9420-A	NR	2E-8		1.061	[1.04-1.08]	Illumina [6627481] (imputed)	N
1023	chr11	57510293	57510294	rs9420	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q12.1	C11orf31, MED19, YPEL4, ZDHHC5	rs9420-A	NR	9E-9		1.061	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1023	chr11	57510293	57510294	rs9420	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q12.1	NR	rs9420-A	NR	2E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1023	chr11	57510293	57510294	rs9420	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q12.1	BTBD18, C11orf31, CLP1, CTNND1, MED19, SERPING1, TMX2, YPEL4, ZDHHC5	rs9420-A	0.311	2E-9		1.068	[1.045-1.092]	Affymetrix, Illumina [9005918] (imputed)	N
1023	chr11	57518520	57518521	rs559693545	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.1	TMX2-CTNND1	rs559693545-C	0.999631	1E-11		0.153716	[0.11-0.2] unit decrease	NR [13737936] (imputed)	N
1023	chr11	57521173	57521173	rs148371753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q12.1	RP11-691N7.6, CTNND1, TMX2-CTNND1	rs148371753-TC	0.15926	3E-12		0.023680516	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr11	57521173	57521173	rs148371753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q12.1	RP11-691N7.6, CTNND1, TMX2-CTNND1	rs148371753-TC	0.159285	2E-10		0.021533474	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr11	57521227	57521228	rs486995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q12.1		rs486995-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1024	chr11	57543660	57543661	rs67812265	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	11q12.1		rs67812265-?	NR	6E-6		1.43119	[1.28-1.59]	NR [666300]	N
1024	chr11	57557667	57557668	rs12274865	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q12.1	TMX2-CTNND1, RP11-691N7.6, CTNND1	rs12274865-T	0.4368	1E-9		0.012366145	[0.0084-0.0164] unit increase	Affymetrix [up to 18485882] (imputed)	N
1024	chr11	57560451	57560452	rs11570190	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q12.1	CTNND1, BTBD18	rs11570190-?		1E-10				NR [6786993] (imputed)	N
1024	chr11	57570679	57570680	rs3781885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q12.1		rs3781885-T	NR	2E-12		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1024	chr11	57570679	57570680	rs3781885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q12.1	NR	rs3781885-?	NR	2E-6		4.709	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1024	chr11	57570679	57570680	rs3781885	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11q12.1	NR	rs3781885-T	0.305304	1E-11		6.77	z score increase	NR [10847151] (imputed)	N
1024	chr11	57600284	57600285	rs12807250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q12.1	Intergenic	rs12807250-T	0.3238	7E-33	(MTAG)	0.0228	[0.019-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1024	chr11	57600284	57600285	rs12807250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q12.1	Intergenic	rs12807250-C	0.6762	2E-28		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1024	chr11	57608248	57608249	rs398016150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q12.1		rs398016150-C	NR	1E-10		0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1024	chr11	57610016	57610017	rs644219	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q12.1	NR	rs644219-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1024	chr11	57612041	57612042	rs143251085	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.1	CTNND1	rs143251085-G	0.3027	7E-11		0.1774	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1024	chr11	57618067	57618068	rs7932091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q12.1	Intergenic	rs7932091-A	0.6796	9E-23		0.0238	[0.019-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1024	chr11	57641882	57641883	rs7117205	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q12.1	NR	rs7117205-T	0.312314	6E-10		6.2	z score decrease	NR [10847151] (imputed)	N
1024	chr11	57643961	57643961	rs56148202	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	11q12.1	NR	rs56148202-TG		7E-6		0.1438	[0.081-0.207] SD units increase	NR [10700000] (imputed)	N
1024	chr11	57644333	57644334	rs6591434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q12.1		rs6591434-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1024	chr11	57650795	57650796	rs2509805	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	11q12.1		rs2509805-?	NR	5E-9				NR [2625067]	N
1024	chr11	57650795	57650796	rs2509805	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11q12.1		rs2509805-?	NR	5E-12		0.0217	unit increase	NR [NR]	N
1024	chr11	57650795	57650796	rs2509805	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q12.1	NR	rs2509805-T	0.3209	5E-16		1.019	[1.015-1.024]	NR [8098588] (imputed)	N
1024	chr11	57654990	57654991	rs78587207	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q12.1		rs78587207-T	0.681	8E-10		0.07	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
1024	chr11	57657140	57657141	rs673344	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q12.1	intergenic	rs673344-A	0.6898	1E-10		6.423	z score decrease	Illumina [18485882] (imputed)	N
1024	chr11	57657412	57657413	rs685149	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q12.1	CTNND1, OR6Q1	rs685149-A		5E-7		0.299	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1024	chr11	57657412	57657413	rs685149	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q12.1	CTNND1, OR6Q1	rs685149-A		1E-6	(EA)	0.31	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1024	chr11	57657412	57657413	rs685149	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.1	CTNND1, OR6Q1	rs685149-A		2E-13		0.311	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1024	chr11	57657412	57657413	rs685149	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q12.1	CTNND1, OR6Q1	rs685149-A		4E-6		0.181	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1024	chr11	57657412	57657413	rs685149	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.1	CTNND1, OR6Q1	rs685149-A		1E-11		0.186	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1024	chr11	57665335	57665336	rs674094	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	11q12.1	TMX2-CTNND1	rs674094-A	0.293658	3E-8		5.53	z score increase	NR [10847151] (imputed)	N
1024	chr11	57666610	57666611	rs592785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs592785-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1024	chr11	57667221	57667222	rs12790660	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q12.1	NR	rs12790660-C	0.3156	4E-10		1.0405828	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1025	chr11	57676250	57676251	rs9645687	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	11q12.1	NR	rs9645687-T	NR	7E-9		5.795	NR z score decrease	NR [NR]	N
1025	chr11	57676250	57676251	rs9645687	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q12.1	NR	rs9645687-T	0.685999999999999	9E-10		0.027032098	[0.018-0.036] unit decrease	NR [NR]	N
1025	chr11	57681827	57681828	rs641325	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11q12.1	TIMM10	rs641325-T	0.337108	7E-10		6.16	z score increase	NR [10847151] (imputed)	N
1025	chr11	57687337	57687338	rs606731	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q12.1	NR	rs606731-?	NR	3E-6		4.677	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	7E-15	(1-stearoyl-2-arachidonoyl-GPC (18:0/20:4))	0.256	[0.19-0.32] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	5E-11	(1-arachidonoyl-GPC (20:4n6)*)	0.215	[0.15-0.28] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	4E-13	(1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4n6))	0.244	[0.18-0.31] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	3E-11	(arachidonate (20:4n6))	0.225	[0.16-0.29] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	5E-11	(1-arachidonoyl-GPC (20:4n6)*)	0.215	[0.15-0.28] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57692574	57692575	rs12416738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q12.1	TMX2-CTNND1, OR9Q1	rs12416738-G	0.851403	3E-11	(arachidonate (20:4n6))	0.225	[0.16-0.29] unit increase	Illumina [13039987] (imputed)	N
1025	chr11	57694259	57694260	rs687432	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	11q12.1	CTNND1, OR9Q1	rs687432-?	NR	2E-9		1.113	[1.075-1.153]	Illumina [12438219] (imputed)	N
1025	chr11	57703724	57703725	rs11229169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q12.1	NR	rs11229169-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1025	chr11	57724058	57724059	rs6591444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q12.1		rs6591444-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1025	chr11	57747896	57747897	rs7121756	29170203	Alonso N	2017-11-23	Ann Rheum Dis	Identification of a novel locus on chromosome 2q13, which predisposes to clinical vertebral fractures independently of bone density.	Fractures (vertebral)	1,553 European ancestry cases, 4,340 European ancestry controls	694 European ancestry cases, 2,105 European ancestry controls, 334 cases, 1,657 controls	11q12.1	NR	rs7121756-A	0.29	4E-7		1.22	[1.13-1.32]	Affymetrix, Illumina [2366456] (imputed)	N
1025	chr11	57771537	57771538	rs10526240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q12.1		rs10526240-A	0.61443	5E-14		0.015691	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
1025	chr11	57771537	57771538	rs10526240	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q12.1	TMX2-CTNND1, OR9Q1	rs10526240-?	NR	1E-17		0.025242023	[0.019-0.031] unit decrease	Illumina [27896057] (imputed)	N
1025	chr11	57781987	57781988	rs10431126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q12.1		rs10431126-G	NR	1E-19		0.0124	[0.0097-0.0151] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1026	chr11	57893346	57893347	rs12788387	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q12.1	OR9L1P, OR9Q1, OR9I3P, OR9I1, OR9I2P	rs12788387-C	0.3348394	2E-11	(EA, Plasma protease C1 inhibitor)	0.3038	[0.22-0.39] unit decrease	Affymetrix [509946]	N
1026	chr11	57896732	57896733	rs113003693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q12.1	Intergenic	rs113003693-T	0.0987	1E-12	(MTAG)	0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1026	chr11	57909085	57909086	rs11229264	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	11q12.1	NR	rs11229264-A	0.2982	1E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1026	chr11	57917264	57917265	rs78631951	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	11q12.1	OR9Q1	rs78631951-C	0.98424	2E-11		1.012	[0.72-1.31] unit decrease	Affymetrix [8590397] (imputed)	N
1026	chr11	57918618	57918619	rs2441986	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	11q12.1	OR5B12	rs2441986-T	0.675356327	2E-7		0.2576	[0.16-0.35] unit increase	Affymetrix [~ 9800000] (imputed)	N
1026	chr11	57919841	57919842	rs145169535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q12.1	OR9Q1	rs145169535-T	0.010352	4E-11		0.07653252	[0.054-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr11	57925976	57925977	rs2218868	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	11q12.1	NR	rs2218868-T	NR	4E-8		1.15	[1.09-1.21]	Illumina [462430]	N
1027	chr11	57982228	57982229	rs1966836	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	11q12.1	OR9Q1, OR6Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21	rs1966836-A	0.288827	8E-9		0.01304139	[0.0086-0.0175] unit increase	NR [NR] (imputed)	N
1027	chr11	57982228	57982229	rs1966836	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	11q12.1	OR9Q1, OR6Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21	rs1966836-A	0.289	3E-6		0.0042	[0.0024-0.006] unit increase	NR [NR] (imputed)	N
1027	chr11	57982228	57982229	rs1966836	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Ability to confide in someone	64,505 European ancestry cases, 238,062 European ancestry controls	NA	11q12.1	OR9Q1, OR6Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21	rs1966836-A	0.289	9E-8		0.0061	[-0.00586-0.01806] unit increase	NR [NR] (imputed)	N
1027	chr11	58060191	58060192	rs12289961	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	11q12.1	LPXN	rs12289961-T	NR	4E-8	(LYM)	1.29	[1.17-1.40]	Affymetrix [530583]	N
1027	chr11	58060191	58060192	rs12289961	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	11q12.1	LPXN	rs12289961-T	NR	1E-7	(NHL)	1.29	[1.17-1.42]	Affymetrix [530583]	N
1028	chr11	58082608	58082609	rs113196862	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11q12.1	NR	rs113196862-?	NR	7E-7	(Native Hawaiian)	0.6231	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1028	chr11	58085154	58085155	rs12270849	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs12270849-T	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr11	58088112	58088112	rs574982531	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	11q12.1	OR10W1-OR5B17	rs574982531-A	NR	2E-8		0.879765	[0.83-0.92]	Illumina [NR] (imputed)	N
1028	chr11	58094704	58094705	rs11229365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q12.1	Intergenic	rs11229365-A	0.3704	1E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr11	58101885	58101886	rs58487339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q12.1		rs58487339-G	0.013366	5E-10		0.061505944	[0.042-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1028	chr11	58126304	58126305	rs4939208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q12.1	Intergenic	rs4939208-A	0.3701	1E-10	(MTAG)	0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr11	58128014	58128015	rs7483027	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q12.1	NR	rs7483027-C	0.3277	6E-11		0.0267	[0.019-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1028	chr11	58131993	58131994	rs12273459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs12273459-T	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr11	58134209	58134210	rs184467454	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q12.1	Intergenic	rs184467454-?		9E-6		2.47	[1.66-3.67]	Illumina [7645193] (imputed)	N
1028	chr11	58162381	58162382	rs12575459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.1		rs12575459-G	NR	3E-7		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1028	chr11	58162381	58162382	rs12575459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.1		rs12575459-G	0.931	1E-7	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1028	chr11	58162381	58162382	rs12575459	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.1	NR	rs12575459-G	NR	1E-8		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1028	chr11	58170105	58170106	rs12279957	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs12279957-C	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1028	chr11	58174774	58174775	rs12802960	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q12.1	OR5B3	rs12802960-C	0.210889	2E-8		0.01707	[0.011-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1028	chr11	58189554	58189555	rs17152679	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs17152679-A	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr11	58203732	58203733	rs11229455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs11229455-T	0.02091	2E-8	(ANP32A)	0.06601	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr11	58207202	58207203	rs11229457	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11q12.1	OR5B12	rs11229457-T	0.2332	1E-8		0.296	mmHg decrease	Illumina [242296]	N
1029	chr11	58207202	58207203	rs11229457	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11q12.1	OR5B12	rs11229457-T	0.2272	6E-8		5.432	z score decrease	Illumina [242296]	N
1029	chr11	58207202	58207203	rs11229457	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11q12.1	OR5B12	rs11229457-T	0.2264	2E-7		0.1632	[0.1-0.22] mmHg decrease	Illumina [242296]	N
1029	chr11	58209422	58209423	rs11229461	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs11229461-C	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr11	58217944	58217945	rs12270515	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q12.1		rs12270515-A	0.21	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
1029	chr11	58217944	58217945	rs12270515	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q12.1	NR	rs12270515-A	0.214	2E-10				NR [9056863] (imputed)	N
1029	chr11	58224122	58224123	rs35464485	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	11q12.1	OR5B12	rs35464485-T	0.97	8E-7		0.61	[0.37-0.85] unit increase	Illumina [7597379] (imputed)	N
1029	chr11	58238669	58238670	rs546759453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11q12.1		rs546759453-A	NR	2E-19		53.8035	[42.08-65.53] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
1029	chr11	58252057	58252058	rs76907928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.1	NR	rs76907928-C	NR	1E-11		0.0286	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1029	chr11	58254025	58254026	rs550064186	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs550064186-T	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr11	58263035	58263036	rs7925560	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11q12.1	OR5B12, OR5B21	rs7925560-G	0.7688	1E-13		1.0326312		Affymetrix [11880941] (imputed)	N
1029	chr11	58274154	58274155	rs11229505	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q12.1		rs11229505-C	0.23	5E-12		6.91	z score increase	Affymetrix [9061022] (imputed)	N
1029	chr11	58284950	58284951	rs10750899	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q12.1	OR5B21	rs10750899-?	NR	2E-7	(subset analysis)			Illumina [130052]	N
1029	chr11	58297080	58297081	rs11295701	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.1	LPXN	rs11295701-C	0.721	2E-8		0.161	[0.1-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1029	chr11	58301885	58301886	rs11512828	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q12.1	Intergenic	rs11512828-C	0.9097	5E-13		0.0246	[0.018-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr11	58307658	58307659	rs75381348	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs75381348-A	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1030	chr11	58331841	58331842	rs112960054	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11q12.1	NR	rs112960054-?	NR	1E-6	(Native Hawaiian)	0.6103	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1030	chr11	58339123	58339124	rs10896794	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.1	CNTF, LPXN	rs10896794-T	0.762	7E-10		1.08	[1.045-1.116]	Affymetrix, Illumina [1230000] (imputed)	N
1030	chr11	58347764	58347765	rs948562	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	11q12.1	ZFP91-CNTF	rs948562-G	NR	6E-7	(LYM)	1.29	[1.16-1.43]	Affymetrix [530583]	N
1030	chr11	58347764	58347765	rs948562	23349640	Vijai J	2013-01-17	PLoS Genet	Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies.	Lymphoma	275 Follicular non-Hodgkin's Lymphoma cases, 269 diffuse large B-cell non-Hodgkin's Lymphoma cases, 198 other non-Hodgkin's Lymphoma cases, 202 Hodgkin's Lymphoma cases, 4,044 controls	202 European ancestry Follicular non-Hodgkin's Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin's Lymphoma cases, 577 European ancestry other non-Hodgkin's Lymphoma cases, 99 European ancestry Hodgkin's Lymphoma cases, 2,596 European ancestry controls	11q12.1	ZFP91-CNTF	rs948562-G	NR	3E-7	(NHL)	1.32	[1.18-1.46]	Affymetrix [530583]	N
1030	chr11	58358347	58358348	rs7102852	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.1	ZFP91	rs7102852-A	0.2175	4E-11		0.2678	[0.19-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1030	chr11	58366560	58366561	rs10896795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11q12.1		rs10896795-G	NR	9E-10		0.0421	[0.029-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1030	chr11	58366560	58366561	rs10896795	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11q12.1	ZFP91-CNTF	rs10896795-A	0.758672	4E-23		0.00587718	[0.0047-0.0071] unit increase	Affymetrix [13995440] (imputed)	N
1030	chr11	58366560	58366561	rs10896795	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11q12.1	ZFP91	rs10896795-G	0.241124	6E-10		0.058248166	[0.04-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
1030	chr11	58373220	58373221	rs12808544	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	11q12.1	ZFP91	rs12808544-C	0.7591	3E-15		1.0344471		Affymetrix [11880941] (imputed)	N
1030	chr11	58373220	58373221	rs12808544	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q12.1	ZFP91	rs12808544-C	0.7591	3E-15		1.0354125		Affymetrix [11880941] (imputed)	N
1030	chr11	58376119	58376120	rs12803463	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.1	ZFP91	rs12803463-G	0.919021	1E-11		0.0237269	[0.017-0.031] unit decrease	Affymetrix [NR] (imputed)	N
1030	chr11	58386176	58386177	rs3168135	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11q12.1		rs3168135-A	0.2408	4E-12		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1030	chr11	58386796	58386797	rs34193069	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.1		rs34193069-?	NR	4E-16		0.0301191	[0.023-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1030	chr11	58391537	58391538	rs17152779	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs17152779-G	0.01394	3E-8	(ANP32A)	0.08302	NR unit increase	Illumina [1671387] (imputed)	N
1030	chr11	58400685	58400686	rs12787765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q12.1		rs12787765-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1030	chr11	58402250	58402251	rs11603890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	11q12.1		rs11603890-C	NR	6E-11		0.0373	[0.026-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1030	chr11	58407739	58407740	rs2276153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q12.1		rs2276153-G	NR	4E-14		0.0441	[0.033-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q12.1	CNTF	rs11229555-T	0.238421	2E-12		0.049794633	[0.036-0.064] unit decrease	Affymetrix [7288503] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q12.1		rs11229555-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11q12.1	OR5B2, OR5B12, OR5B21, AP001350.1, ZFP91, ZFP91-CNTF, CNTF, LPXN, GLYAT	rs11229555-?		9E-6				Illumina [9578670] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q12.1	GLYAT	rs11229555-?	NR	4E-8	(subset analysis)			Illumina [130052]	N
1030	chr11	58408686	58408687	rs11229555	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.1	NR	rs11229555-C	0.75	1E-8	(EA)	1.0858196		Affymetrix, Illumina [~ 9000000] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.1	NR	rs11229555-C	0.75	5E-12	(EA)	1.0819354		Affymetrix, Illumina [~ 9000000] (imputed)	N
1030	chr11	58408686	58408687	rs11229555	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.1	NR	rs11229555-C	0.75	1E-6	(EA)	1.0702233	[1.04-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1030	chr11	58413909	58413910	rs1938598	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	11q12.1	AP000445.3	rs1938598-C	0.239796	7E-9		0.038035963	[0.025-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
1030	chr11	58413909	58413910	rs1938598	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.1	CNTF, GLYAT	rs1938598-T		1E-13		0.33	unit increase	Affymetrix [at least 2696785] (imputed)	N
1030	chr11	58413909	58413910	rs1938598	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.1	CNTF, GLYAT	rs1938598-T		1E-12		0.21	unit increase	Affymetrix [at least 2696785] (imputed)	N
1030	chr11	58413909	58413910	rs1938598	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.1	CNTF, GLYAT	rs1938598-T		3E-6		0.127	unit increase	Affymetrix [at least 2696785] (imputed)	N
1030	chr11	58417882	58417882	rs34155496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q12.1		rs34155496-GA	NR	1E-20		0.0245	[0.019-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1030	chr11	58424080	58424081	rs61889554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q12.1		rs61889554-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1030	chr11	58435946	58435947	rs142551126	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GLYAT	rs142551126-?	NR	2E-8	(female)	0.450934	[NR] unit increase	Affymetrix [NR] (imputed)	N
1030	chr11	58436405	58436406	rs10896815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q12.1	GLYAT	rs10896815-C	0.410503	3E-11		0.015185592	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1030	chr11	58436938	58436939	rs10896816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q12.1		rs10896816-A	NR	4E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1030	chr11	58436938	58436939	rs10896816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.1	NR	rs10896816-A	0.40789	4E-12				Affymetrix, Illumina [23467995] (imputed)	N
1030	chr11	58436938	58436939	rs10896816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q12.1	NR	rs10896816-A	0.41026	4E-15		0.015184	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1030	chr11	58437327	58437328	rs11229575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs11229575-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1031	chr11	58472798	58472799	rs2507838	23108985	Guo YF	2012-10-30	Hum Genet	Suggestion of GLYAT gene underlying variation of bone size and body lean mass as revealed by a bivariate genome-wide association study.	Body mass (lean)	1,627 Han Chinese individuals	2,286 European ancestry individuals	11q12.1	GLYAT	rs2507838-A	0.03	2E-8	(ALM-ABS)			Affymetrix [689368]	N
1031	chr11	58522091	58522092	rs181557588	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	11q12.1	GLYAT	rs181557588-T	0.9844	9E-6		0.5729	[0.32-0.83] unit increase	Illumina [up to 38043574] (imputed)	N
1031	chr11	58535268	58535269	rs117069767	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs117069767-A	0.01045	1E-8	(CTSS)	0.014	NR unit increase	Illumina [1671387] (imputed)	N
1033	chr11	58764920	58764921	rs1938790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs1938790-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1033	chr11	58822333	58822334	rs58969255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q12.1	Intergenic	rs58969255-A	0.6647	2E-8	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr11	58822333	58822334	rs58969255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q12.1	Intergenic	rs58969255-A	0.6647	1E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1034	chr11	58867434	58867435	rs185044544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q12.1	NR	rs185044544-T	0.974928	5E-9		0.0219396	[0.014-0.03] unit increase	Affymetrix [16585854] (imputed)	N
1034	chr11	58867434	58867435	rs185044544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q12.1	NR	rs185044544-T	0.974928	1E-6		0.0209325	[0.012-0.03] unit increase	Affymetrix [16585866] (imputed)	N
1034	chr11	58902678	58902679	rs1048374	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q12.1	NR	rs1048374-G	NR	1E-11		1.134	[1.09-1.18]	Affymetrix, Illumina [29235255] (imputed)	N
1034	chr11	58902678	58902679	rs1048374	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	11q12.1	NR	rs1048374-G	0.177	6E-9		1.151	[1.10-1.21]	Affymetrix, Illumina [10186136] (imputed)	N
1034	chr11	58919922	58919922	rs533676902	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11q12.1		rs533676902-?	NR	5E-12		0.064999	[0.046-0.084] unit increase	NR [9800000] (imputed)	N
1034	chr11	58920491	58920492	rs116918730	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.1	FAM111A	rs116918730-C	0.9536	2E-15		0.0353797	[0.027-0.044] unit increase	NR [13737936] (imputed)	N
1034	chr11	58920491	58920492	rs116918730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.1		rs116918730-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1034	chr11	58920491	58920492	rs116918730	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.1		rs116918730-?	NR	2E-16		0.039913	[0.03-0.05] unit increase	Affymetrix [20259828] (imputed)	N
1034	chr11	58943264	58943265	rs6591508	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q12.1	NR	rs6591508-?	NR	3E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1035	chr11	59020986	59020987	rs7944135	29975729	Kim TH	2018-07-05	PLoS One	Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B.	Hepatitis B surface antigen seroclearance in chronic hepatitis B infection	100 Korean ancestry cases, 100 Korean ancestry controls	NA	11q12.1	DTX4, MPEG1	rs7944135-A	0.13	4E-6		4.16	[2.27-7.63]	Illumina [1365088]	N
1035	chr11	59029370	59029371	rs140003438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs140003438-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1035	chr11	59031486	59031487	rs4939268	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.1	DTX4	rs4939268-?	NR	7E-6	(TAG 54:4)	1.84071	[1.04-2.64] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1035	chr11	59050844	59050845	rs7122295	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	11q12.1		rs7122295-?	NR	9E-6				Affymetrix, Illumina [3311160] (imputed)	N
1035	chr11	59059583	59059584	rs61903333	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	11q12.1	NR	rs61903333-?	NR	7E-6	(EA)			Illumina [1735619]	N
1036	chr11	59128041	59128042	rs34730029	31467194	Ganna A	2019-08-01	Science	Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior.	same-sex sexual behaviour	188,825 European ancestry males	NA	11q12.1	NR	rs34730029-G	NR	3E-7		0.0037	[0.0023-0.0051] unit increase	Affymetrix [NR] (imputed)	N
1036	chr11	59130111	59130112	rs149914843	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q12.1	NR	rs149914843-?	NR	3E-9	(Japanese)	1.3074	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1036	chr11	59190810	59190811	rs12787182	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q12.1	OR5A2	rs12787182-A	0.7094	2E-9		0.01328244	[0.0089-0.0176] unit increase	Affymetrix [11514654] (imputed)	N
1036	chr11	59192088	59192089	rs1453548	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	11q12.1	OR5A2	rs1453548-T	0.3346	1E-6		0.0078	[0.0047-0.0109] unit increase	Affymetrix [~ 7740000] (imputed)	N
1036	chr11	59212883	59212884	rs10896972	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	11q12.1	NR	rs10896972-T	0.6698	2E-9		1.0323113	NR	NR [8968716] (imputed)	N
1036	chr11	59224143	59224144	rs7943953	23910658	McRae JF	2013-07-31	Curr Biol	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (&beta;-ionone)	187 European ancestry individuals	Up to 109 Asian ancestry individuals	11q12.1	OR4D6	rs7943953-?		1E-31		14.75	[NR] unit decrease	Affymetrix [619656]	N
1036	chr11	59226399	59226400	rs117115038	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs117115038-G	0.01916	2E-8	(HSPA6)	0.02378	NR unit increase	Illumina [1671387] (imputed)	N
1037	chr11	59307319	59307323	rs201217897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q12.1		rs201217897-A	NR	4E-9		0.0229	[0.015-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1037	chr11	59314456	59314457	rs141721595	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q12.1	RNU7-58P	rs141721595-A	0.0015	7E-6		0.9456	[0.53-1.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1037	chr11	59348637	59348638	rs11230009	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs11230009-G	0.01568	1E-8	(SERPINA3)	0.2296	NR unit increase	Illumina [1671387] (imputed)	N
1037	chr11	59357077	59357078	rs1287449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q12.1	NR	rs1287449-T	NR	3E-9		0.0304	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr11	59433542	59433543	rs143542634	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Hip circumference adjusted for BMI	7,272 Hispanic or Latin American females, 5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American individuals, 8,913 African American females, 758 African American males, 4,795 European ancestry females, 4,281 European ancestry males	11q12.1		rs143542634-A	0.007	9E-6		4.45	z score increase	Illumina [NR] (imputed)	N
1038	chr11	59480950	59480951	rs499033	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	11q12.1		rs499033-?	NR	5E-10				Illumina [1128286]	N
1038	chr11	59483692	59483693	rs518427	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	333 European and unknown ancestry cases, 533 European and unknown ancestry controls	NA	11q12.1	STX3	rs518427-?	NR	7E-6		1.59	[1.30-1.94]	Illumina [> 2600000] (imputed)	N
1039	chr11	59572668	59572669	rs143709973	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q12.1	NR	rs143709973-A	0.954541	4E-10		0.0121082	[0.0081-0.0161] unit increase	Affymetrix [16582909] (imputed)	N
1039	chr11	59572668	59572669	rs143709973	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q12.1	NR	rs143709973-A	0.954565	4E-8		0.0132107	[0.0077-0.0187] unit increase	Affymetrix [16582621] (imputed)	N
1039	chr11	59572668	59572669	rs143709973	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q12.1	NR	rs143709973-A	0.954541	3E-8		0.011943	[0.0075-0.0164] unit increase	Affymetrix [16582965] (imputed)	N
1039	chr11	59572668	59572669	rs143709973	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q12.1	NR	rs143709973-A	0.954565	2E-7		0.0135828	[0.0077-0.0194] unit increase	Affymetrix [16582614] (imputed)	N
1039	chr11	59578321	59578322	rs11230085	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11q12.1	NR	rs11230085-?	NR	1E-7	(MMP-16)	0.23	[0.15-0.31] unit increase	Illumina [4020654] (imputed)	N
1039	chr11	59610580	59610581	rs150884181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN1	5,354 Icelandic ancestry individuals	NA	11q12.1		rs150884181-G	0.01963	6E-8		0.362211	[0.23-0.49] unit decrease	Illumina [7506463] (imputed)	N
1039	chr11	59616199	59616200	rs17597065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.1		rs17597065-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1039	chr11	59623377	59623378	rs34324219	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN1	5,354 Icelandic ancestry individuals	NA	11q12.1		rs34324219-A	0.1041	4E-47		0.428984	[0.37-0.49] unit decrease	Illumina [7506463] (imputed)	N
1039	chr11	59623377	59623378	rs34324219	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.1	NR	rs34324219-A	0.116	3E-25	(Transcobalamin-1, TCN1.11232.46.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1039	chr11	59623377	59623378	rs34324219	28334792	Nongmaithem SS	2017-02-27	Hum Mol Genet	GWAS identifies population-specific new regulatory variants in FUT6 associated with plasma B12 concentrations in Indians.	Vitamin B12 levels	1,001 Indo-European ancestry adults	1,713 Indo-European ancestry adults, 690 Indo-European ancestry children, 481 Dravidian ancestry adults, 534 Dravidian ancestry children	11q12.1	TCN1	rs34324219-A	NR	4E-8		0.34	[NR] pmol/l decrease	Affymetrix [8900000] (imputed)	N
1039	chr11	59623377	59623378	rs34324219	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	11q12.1	TCN1	rs34324219-A	0.104	5E-11	(Vitamin B12)	0.292	[NR] unit decrease	Illumina [737081]	N
1039	chr11	59631534	59631535	rs34528912	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.1	TCN1	rs34528912-T	0.042	5E-30	(Transcobalamin-1, TCN1.11232.46.3)	0.71	[0.59-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
1039	chr11	59633492	59633493	rs526934	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	11q12.1	TCN1	rs526934-?	0.27	2E-10	(Plasma Vitamin B12)	0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1039	chr11	59633492	59633493	rs526934	19303062	Tanaka T	2009-03-18	Am J Hum Genet	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	11q12.1	TCN1	rs526934-A	0.67	2E-6	(vitamin B12)	27.62	[11.65-43.59] pg/mL increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1040	chr11	59659005	59659006	rs12277676	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN1	5,354 Icelandic ancestry individuals	NA	11q12.1		rs12277676-T	0.3487	3E-59		0.310425	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1040	chr11	59668902	59668903	rs78359123	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	11q12.1	NR	rs78359123-G	NR	6E-6		3.911	[2.17-7.06]	Illumina [13976150] (imputed)	N
1040	chr11	59674096	59674097	rs150355695	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.1	TCN1	rs150355695-A	0.658125	6E-26	(TCN1, 11232_46_3)	0.2865607	[0.23-0.34] unit increase	Illumina [> 1000000] (imputed)	N
1040	chr11	59684468	59684469	rs143522487	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Vitamin B12 levels	5,865 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	11q12.1		rs143522487-T	0.0528	1E-14		0.31	[0.23-0.39] unit decrease	Illumina [7880617]	N
1040	chr11	59730517	59730518	rs60217568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.1	NR	rs60217568-G	0.02265	4E-9	(ISOC2)	0.2106	NR unit increase	Illumina [1671387] (imputed)	N
1041	chr11	59825584	59825585	rs17154511	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.1		rs17154511-?	NR	1E-9		0.0133599	[0.0089-0.0178] unit decrease	Affymetrix [20259828] (imputed)	N
1041	chr11	59826676	59826677	rs1286289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q12.1		rs1286289-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1041	chr11	59831715	59831716	rs1151065	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11q12.1	NR	rs1151065-?	NR	8E-8		849.11957	NR unit decrease	Illumina [2379855]	N
1041	chr11	59837191	59837192	rs2298585	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	11q12.1	MS4A3	rs2298585-?	NR	3E-15		71.8	[54.08-89.52] pg/ml increase	Illumina [1940245] (imputed)	N
1041	chr11	59838620	59838621	rs474951	24755620	Perez-Palma E	2014-04-22	PLoS One	Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.	Alzheimer's disease	2,540 European ancestry cases, 2,029 European ancestry controls	NA	11q12.1	MS4A3	rs474951-T		1E-6		1.2658	[NR]	Affymetrix, Illumina [1216213] (imputed)	N
1041	chr11	59844241	59844242	rs501945	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.1	NR	rs501945-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1041	chr11	59852445	59852446	rs116009633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q12.1		rs116009633-A	NR	1E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1041	chr11	59852445	59852446	rs116009633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q12.1		rs116009633-A	NR	2E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1041	chr11	59869118	59869119	rs580064	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.2	NR	rs580064-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1042	chr11	59908626	59908627	rs1786140	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.2	NR	rs1786140-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1042	chr11	59923507	59923508	rs983392	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q12.2		rs983392-A	0.5336	4E-10		49.633244	z score increase	NR [6814003]	N
1042	chr11	59923507	59923508	rs983392	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	11q12.2	MS4A2	rs983392-?	NR	9E-13		1.1111112	[1.08-1.15]	Affymetrix [up to 7055881] (imputed)	N
1042	chr11	59923507	59923508	rs983392	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	11q12.2	MS4A2	rs983392-?	NR	5E-8		1.1235955		Affymetrix [up to 7700000] (imputed)	N
1042	chr11	59923507	59923508	rs983392	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	11q12.2	MS4A6A	rs983392-G	NR	5E-6		0.007599	NR unit decrease	Affymetrix [10847151] (imputed)	N
1042	chr11	59923507	59923508	rs983392	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	11q12.2	MS4A6A	rs983392-G	0.4083	2E-11		6.71	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1042	chr11	59923507	59923508	rs983392	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	11q12.2	MS4A6A	rs983392-G	NR	5E-11		6.56	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1042	chr11	59923507	59923508	rs983392	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q12.2	MS4A6A	rs983392-A	0.597	6E-16		1.1111	[1.09-1.15]	Illumina [7055881] (imputed)	N
1042	chr11	59928671	59928672	rs11605427	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	11q12.2	NR	rs11605427-?	NR	6E-6				Affymetrix [7795605] (imputed)	N
1042	chr11	59928671	59928672	rs11605427	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.2	NR	rs11605427-?	NR	8E-17				Affymetrix [7795605] (imputed)	N
1042	chr11	59930965	59930966	rs664034	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein A4GALT	5,365 Icelandic ancestry individuals	NA	11q12.2		rs664034-C	0.4154	6E-36		0.233886	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
1042	chr11	59930965	59930966	rs664034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q12.2	AP001257.1	rs664034-C	0.419891	1E-13		0.01677417	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1042	chr11	59933491	59933492	rs56189574	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q12.2	NR	rs56189574-A	0.56084	3E-21		0.0188302	[0.015-0.023] unit increase	NR [NR]	N
1042	chr11	59939306	59939307	rs610932	21460840	Hollingworth P	2011-04-03	Nat Genet	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	11q12.2	MS4A4E, MS4A6A	rs610932-?	0.58	2E-14		1.11	[1.09-1.15]	Affymetrix, Illumina [496763]	N
1042	chr11	59940598	59940599	rs7232	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLTPD2	5,365 Icelandic ancestry individuals	NA	11q12.2		rs7232-A	0.4007	2E-25		0.191353	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
1042	chr11	59940598	59940599	rs7232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q12.2	MS4A6A	rs7232-A	0.377985	2E-17		0.01958226	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1042	chr11	59940598	59940599	rs7232	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11q12.2	MS4A6A	rs7232-?	NR	1E-14		1076.5072	NR unit decrease	Illumina [2379855]	N
1042	chr11	59940598	59940599	rs7232	31204042	Hou XH	2019-05-21	Neurobiol Aging	Genome-wide association study identifies Alzheimer's risk variant in MS4A6A influencing cerebrospinal fluid sTREM2 levels.	Cerebrospinal fluid sTREM-2 levels	449 European ancestry individuals	377 Han Chinese ancestry individuals	11q12.2	MAS4A6A	rs7232-A		2E-11		0.49	[0.38-0.60] unit increase	Illumina [3263912] (imputed)	N
1042	chr11	59940598	59940599	rs7232	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	11q12.2	MS4A6A	rs7232-?	NR	6E-7		1.0942651		Illumina [241551]	N
1042	chr11	59941799	59941799	rs535602077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q12.2	MS4A6A	rs535602077-CT	0.361571	1E-11		0.016336687	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1042	chr11	59942814	59942815	rs7935829	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	11q12.2	MS4A6A	rs7935829-G	0.4	4E-16	(EA)	0.018	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1042	chr11	59942814	59942815	rs7935829	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	11q12.2	MS4A6A	rs7935829-G	0.39	6E-18		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1042	chr11	59942814	59942815	rs7935829	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	11q12.2	MS4A6A	rs7935829-G	NR	8E-13		7.1575665	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1042	chr11	59942814	59942815	rs7935829	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		11q12.2	MS4A6A	rs7935829-?	NR	6E-8		0.0056	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1042	chr11	59944809	59944810	rs7946992	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA	11q12.2	MS4A6A	rs7946992-C	0.39	2E-16		0.016	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1042	chr11	59945744	59945745	rs12453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs12453-C	0.370849	4E-12				Affymetrix, Illumina [23114412] (imputed)	N
1042	chr11	59945744	59945745	rs12453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q12.2	NR	rs12453-C	0.40604	1E-14		0.01511	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1042	chr11	59946310	59946311	rs5792172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11q12.2		rs5792172-C	NR	4E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1042	chr11	59948373	59948374	rs17602572	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.2	MS4A6A	rs17602572-C	0.595052	1E-41		0.0254317	[0.022-0.029] unit increase	NR [13737936] (imputed)	N
1042	chr11	59948373	59948374	rs17602572	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs17602572-?	NR	1E-43		0.028065	[0.024-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1042	chr11	59948373	59948374	rs17602572	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.2	MS4A6A	rs17602572-C	0.599961	4E-13	(men)	0.0367624	[0.027-0.047] unit increase	NR [17166351] (imputed)	N
1042	chr11	59948373	59948374	rs17602572	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.2	MS4A6A	rs17602572-C	0.599513	1E-19		0.0304395	[0.024-0.037] unit increase	NR [17166351] (imputed)	N
1042	chr11	59948373	59948374	rs17602572	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.2	MS4A6A	rs17602572-C	0.599122	5E-7	(women)	0.0231276	[0.014-0.032] unit increase	NR [17166351] (imputed)	N
1042	chr11	59956202	59956203	rs76170615	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q12.2	MS4A6A	rs76170615-T	0.0487313339799437	6E-7	(G_Collinsella_HB)	0.699159	[0.42-0.97] unit decrease	Illumina [7711310] (imputed)	N
1042	chr11	59958379	59958380	rs2081545	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	11q12.2	MS4A6A	rs2081545-A	0.381	2E-15		7.97	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1042	chr11	59962188	59962189	rs7926354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.2		rs7926354-?	NR	5E-45				NR [~ 8900000] (imputed)	N
1042	chr11	59970983	59970984	rs666555	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs666555-?	NR	2E-30		0.0237081	[0.02-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1042	chr11	59991846	59991847	rs620612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.2		rs620612-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1042	chr11	59996993	59996994	rs11230201	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		11q12.2	MS4A6A, MS4A4A	rs11230201-?	NR	3E-9		0.006	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1042	chr11	59996993	59996994	rs11230201	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	11q12.2	MS4A6A	rs11230201-G	0.41	5E-10		0.0057	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1042	chr11	59997665	59997666	rs600550	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	11q12.2	MS4A4E	rs600550-T	0.38	2E-11	(activity)	0.0137	[0.0068-0.0206] ng/ml decrease	Illumina [796174]	N
1042	chr11	59999793	59999794	rs75738991	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	11q12.2	MS4A6A	rs75738991-C	0.16762297650130553	6E-6	(AA)	0.4681	[0.27-0.67] unit increase	Illumina [at least 988306] (imputed)	N
1042	chr11	60021507	60021508	rs7396753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q12.2		rs7396753-C	0.592279	2E-12		0.015840014	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,367 Icelandic ancestry individuals	NA	11q12.2		rs1582763-A	0.4204	1E-152		0.461132	[0.43-0.5] unit increase	Illumina [7506463] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,361 Icelandic ancestry individuals	NA	11q12.2		rs1582763-A	0.4204	4E-66		0.312273	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	11q12.2		rs1582763-?	NR	3E-33				Illumina [NR] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	31413141	Deming Y	2019-08-01	Sci Transl Med	The MS4A gene cluster is a key modulator of soluble TREM2 and Alzheimer's disease risk.	Cerebrospinal fluid sTREM-2 levels	813 individuals	580 individuals	11q12.2	MS4A4A	rs1582763-A	0.368	5E-21		9.421	NR unit increase	Illumina [7320475] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	11q12.2	MS4A6A	rs1582763-A	NR	5E-9		5.857	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	11q12.2	MS4A4A	rs1582763-A	0.37	2E-9		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	11q12.2	MS4A6A	rs1582763-A	0.37	6E-10	(BMI-adjusted)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1042	chr11	60021947	60021948	rs1582763	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	11q12.2	MS4, MS4A6A, MS4A4A, MS4A6E	rs1582763-G	0.63	2E-9		1.1494253	[1.1-1.2]	NR [NR]	N
1042	chr11	60023086	60023087	rs1562990	21627779	Antunez C	2011-05-31	Genome Med	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls	11q12.2	MS4A	rs1562990-?	0.58	4E-11		1.14	[1.10-1.18]	Affymetrix, Illumina [696707] (imputed)	N
1043	chr11	60034428	60034429	rs4938933	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	11q12.2	MS4A4A	rs4938933-?	0.61	8E-12		1.12	[1.09-1.15]	Affymetrix, Illumina [2324889] (imputed)	N
1043	chr11	60041988	60041989	rs77406754	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q12.2	NR	rs77406754-?	NR	9E-7				Affymetrix [5486770] (imputed)	N
1043	chr11	60049097	60049098	rs2017549	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,361 Icelandic ancestry individuals	NA	11q12.2		rs2017549-G	0.3982	5E-11		0.123913	[0.087-0.161] unit decrease	Illumina [7506463] (imputed)	N
1043	chr11	60070175	60070176	rs6591561	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,367 Icelandic ancestry individuals	NA	11q12.2		rs6591561-G	0.2755	1E-69		0.353671	[0.31-0.39] unit decrease	Illumina [7506463] (imputed)	N
1043	chr11	60070175	60070176	rs6591561	31413141	Deming Y	2019-08-01	Sci Transl Med	The MS4A gene cluster is a key modulator of soluble TREM2 and Alzheimer's disease risk.	Cerebrospinal fluid sTREM-2 levels	813 individuals	580 individuals	11q12.2	MS4A4A	rs6591561-G	0.316	2E-11		6.734	NR unit decrease	Illumina [7320475] (imputed)	N
1043	chr11	60076692	60076693	rs11824734	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11q12.2	NR	rs11824734-?	NR	2E-12		1054.0887	NR unit decrease	Illumina [2379855]	N
1043	chr11	60079650	60079651	rs10792263	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs10792263-?	NR	2E-38		0.0270939	[0.023-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1043	chr11	60081273	60081274	rs7108879	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.2	NR	rs7108879-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1043	chr11	60090446	60090447	rs185502387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11q12.2		rs185502387-G	NR	2E-13		19.6852	[14.42-24.95] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
1043	chr11	60091984	60091985	rs75615471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q12.2		rs75615471-C	0.265538	5E-11		0.016595768	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr11	60099224	60099225	rs4939338	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q12.2	NR	rs4939338-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1043	chr11	60103384	60103385	rs72924659	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q12.2		rs72924659-T	0.3321	5E-12		58.9558	z score increase	NR [6814003]	N
1043	chr11	60107746	60107747	rs10736703	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	11q12.2	MS4A6E	rs10736703-G	0.07957	1E-6	(HbA1c)	0.00173	NR unit decrease	Affymetrix [305158]	N
1043	chr11	60108099	60108100	rs77771494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	MS4A6E	rs77771494-T	0.963	3E-6	(AA)	0.211	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60110602	60110603	rs79010836	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs79010836-C	0.963	2E-6	(AA)	0.212	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60110802	60110803	rs114021604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs114021604-G	0.963	2E-6	(AA)	0.212	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60114756	60114757	rs75092417	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs75092417-G	0.963	5E-6	(AA)	0.201	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60118635	60118636	rs10897054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q12.2		rs10897054-T	NR	2E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1043	chr11	60121740	60121741	rs115301024	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs115301024-A	0.962	4E-6	(AA)	0.201	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60125816	60125817	rs114615507	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs114615507-G	0.962	4E-6	(AA)	0.2	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60126845	60126846	rs114894087	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs114894087-G	0.962	5E-6	(AA)	0.2	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60133529	60133530	rs115028228	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs115028228-T	0.962	5E-6	(AA)	0.199	NR unit increase	Illumina [NR] (imputed)	N
1043	chr11	60152583	60152584	rs950802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q12.2	NR	rs950802-A	0.314552	3E-10		0.012486	[0.0086-0.0164] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1043	chr11	60156296	60156297	rs2014121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q12.2		rs2014121-C	NR	1E-14		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1043	chr11	60156700	60156701	rs2233250	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	NYD-SP21	rs2233250-?	NR	3E-6	(taurine)	0.7566792	[0.44-1.07] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1043	chr11	60157165	60157166	rs2233253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q12.2	MS4A7	rs2233253-T	0.629482	8E-16		0.018541593	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr11	60158648	60158649	rs6591578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q12.2	MS4A7, MS4A14, MS4A6E	rs6591578-G	0.369826	8E-24		0.023161469	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr11	60158648	60158649	rs6591578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs6591578-A	0.643474	4E-28				Affymetrix, Illumina [23467995] (imputed)	N
1043	chr11	60158648	60158649	rs6591578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q12.2	NR	rs6591578-A	0.633592	2E-29		0.021869	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1043	chr11	60160837	60160838	rs4938939	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	11q12.2	MS4A7	rs4938939-A	0.293	3E-9		0.022	[0.015-0.03] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1044	chr11	60164526	60164527	rs10501383	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs10501383-T	0.09708	4E-13		0.2991	[0.22-0.38] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60164526	60164527	rs10501383	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs10501383-T	0.09708	5E-10		0.255	[0.17-0.34] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60169827	60169828	rs1348371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.2		rs1348371-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1044	chr11	60174397	60174399	rs139706128	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs139706128-T	0.09172	1E-11		0.2885	[0.21-0.37] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60180774	60180775	rs75368561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	MS4A14	rs75368561-G	0.969	5E-6	(AA)	0.221	NR unit increase	Illumina [NR] (imputed)	N
1044	chr11	60192312	60192313	rs77253690	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs77253690-G	0.97	3E-6	(AA)	0.228	NR unit increase	Illumina [NR] (imputed)	N
1044	chr11	60194813	60194814	rs138753278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs138753278-A	0.966	4E-6	(AA)	0.216	NR unit increase	Illumina [NR] (imputed)	N
1044	chr11	60208823	60208824	rs11230328	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	11q12.2	Intergenic	rs11230328-G	0.27	6E-10		0.31	[0.21-0.41] unit increase	NR [~ 38000000] (imputed)	N
1044	chr11	60217820	60217821	rs73481300	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	11q12.2	MS4A5	rs73481300-C	0.929546143	1E-6		0.259485	[0.15-0.36] unit decrease	Illumina [6952813] (imputed)	N
1044	chr11	60217820	60217821	rs73481300	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	11q12.2	NR	rs73481300-?		9E-6				Illumina [up to 6969139] (imputed)	N
1044	chr11	60230530	60230531	rs2070770	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs2070770-T	0.09653	8E-11		0.2717	[0.19-0.35] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60230530	60230531	rs2070770	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs2070770-T	0.09653	2E-10		0.2657	[0.18-0.35] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60230530	60230531	rs2070770	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs2070770-T	0.09671	7E-10		0.2571	[0.18-0.34] unit decrease	Illumina [18234152] (imputed)	N
1044	chr11	60238404	60238405	rs17615103	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	11q12.2	MS4A1	rs17615103-T	NR	6E-6		0.22	[0.12-0.32] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1044	chr11	60241019	60241020	rs137877371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs137877371-T	0.96	3E-6	(AA)	0.044	unit increase	Illumina [NR] (imputed)	N
1044	chr11	60249733	60249734	rs4447195	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs4447195-T	0.09804	1E-9		0.2525	[0.17-0.33] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60251344	60251345	rs77902874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.2	Intergenic	rs77902874-A	0.957	1E-6	(AA)	0.043	unit increase	Illumina [NR] (imputed)	N
1044	chr11	60262632	60262633	rs5792186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q12.2	MS4A12	rs5792186-A	0.54597	2E-16		0.01851912	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1044	chr11	60266069	60266070	rs7939177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs7939177-T	0.61049	7E-14		0.1877	[0.14-0.24] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60266069	60266070	rs7939177	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs7939177-T	0.61049	7E-13		0.1785	[0.13-0.23] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60266797	60266798	rs4939378	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q12.2	MS4A12	rs4939378-?		9E-6				Illumina [4322238] (imputed)	N
1044	chr11	60267694	60267695	rs7933244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs7933244-C	0.540711	3E-19				Affymetrix, Illumina [23472807] (imputed)	N
1044	chr11	60267694	60267695	rs7933244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q12.2	NR	rs7933244-C	0.525172	7E-19		0.017291	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1044	chr11	60272994	60272995	rs5792187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs5792187-C	0.60936	3E-15		0.1976	[0.15-0.25] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60272994	60272995	rs5792187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs5792187-C	0.60936	2E-21		0.237	[0.19-0.29] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60272994	60272995	rs5792187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs5792187-C	0.60936	2E-16		0.2059	[0.16-0.25] unit decrease	Illumina [18238311] (imputed)	N
1044	chr11	60272994	60272995	rs5792187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs5792187-C	0.6093299999999999	7E-16		0.2024	[0.15-0.25] unit decrease	Illumina [18238340] (imputed)	N
1044	chr11	60272994	60272995	rs5792187	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q12.2		rs5792187-C	0.60913	5E-13		0.1817	[0.13-0.23] unit decrease	Illumina [18238700] (imputed)	N
1044	chr11	60275900	60275901	rs1941023	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	11q12.2	MS4A12, MS4A13	rs1941023-?	NR	4E-7		1.250764	[1.146796-1.364159]	Illumina [at least 4756722] (imputed)	N
1044	chr11	60291503	60291504	rs150439352	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11q12.2	MS4A13	rs150439352-A	NR	4E-6	(males)	0.47	[0.27-0.67] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1045	chr11	60312862	60312863	rs1941027	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	11q12.2	MS4A13	rs1941027-C		4E-6		0.04	[0.02-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1045	chr11	60335963	60335964	rs2847212	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip or knee	5,414 European ancestry cases, 9,939 European ancestry healthy controls	12,658 European ancestry cases, 50,898 European ancestry healthy controls	11q12.2	NR	rs2847212-C	0.1248	1E-6		1.04	[1.02-1.06]	Illumina [270934]	N
1045	chr11	60346931	60346932	rs11230394	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	11q12.2	NR	rs11230394-G		6E-6				NR [525577]	N
1045	chr11	60361183	60361184	rs74593111	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	11q12.2	Intergenic	rs74593111-G	0.927104833	8E-6		0.265756	[0.15-0.38] unit decrease	Illumina [6952813] (imputed)	N
1045	chr11	60387017	60387018	rs117509195	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q12.2	NR	rs117509195-G	NR	5E-6		1.1764705	[NR]	Illumina [7158791] (imputed)	N
1046	chr11	60537577	60537578	rs4939452	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin saturation across sleep episode)	21,126 European, African American, Hispanic/Latino or East Asian ancestry individuals	NA	11q12.2		rs4939452-C	NR	5E-8		0.064	[0.04-0.088] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
1047	chr11	60592275	60592276	rs595018	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	11q12.2	CCDC86	rs595018-A	0.216	2E-7		1.46	[1.27-1.69]	Illumina [287802]	N
1047	chr11	60628028	60628029	rs75349433	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132A	5,356 Icelandic ancestry individuals	NA	11q12.2		rs75349433-T	0.03182	2E-52		0.769825	[0.67-0.87] unit decrease	Illumina [7506463] (imputed)	N
1047	chr11	60635829	60635830	rs3862662	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	11q12.2	ZP1	rs3862662-A	NR	3E-6		9.0566	[5.34-12.77] unit increase	Illumina [6097251] (imputed)	N
1048	chr11	60689444	60689445	rs555835	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132A	5,356 Icelandic ancestry individuals	NA	11q12.2		rs555835-T	0.3235	2E-199		0.534259	[0.5-0.57] unit decrease	Illumina [7506463] (imputed)	N
1048	chr11	60689444	60689445	rs555835	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.2	TMEM132A	rs555835-C	0.6765625	5E-113	(TMEM132A, 7871_16_3)	0.56808287	[0.52-0.62] unit increase	Illumina [> 1000000] (imputed)	N
1048	chr11	60689444	60689445	rs555835	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.2	NR	rs555835-C	0.631	3E-92	(Transmembrane protein 132A, TMEM132A.7871.16.3)	0.5	[0.46-0.54] unit increase	Affymetrix [10572788] (imputed)	N
1048	chr11	60698731	60698732	rs11230521	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.2	TMEM132A	rs11230521-A	0.231	2E-112	(Transmembrane protein 132A, TMEM132A.7871.16.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1048	chr11	60703776	60703777	rs55920775	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132A	5,356 Icelandic ancestry individuals	NA	11q12.2		rs55920775-A	0.2347	2E-112		0.465306	[0.42-0.51] unit increase	Illumina [7506463] (imputed)	N
1048	chr11	60716248	60716249	rs79379713	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	11q12.2		rs79379713-?	NR	1E-5				Affymetrix, Illumina [3311160] (imputed)	N
1048	chr11	60718791	60718792	rs150370599	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	11q12.2		rs150370599-T	0.074	8E-26		0.1791	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1048	chr11	60723009	60723010	rs541591	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.2	NR	rs541591-A	0.022	1E-42	(Transmembrane protein 132A, TMEM132A.7871.16.3)	1.16	[0.98-1.34] unit decrease	Affymetrix [10572788] (imputed)	N
1048	chr11	60729293	60729294	rs79538630	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q12.2	CD5/CD6	rs79538630-T	0.035	1E-9		1.213		Illumina [715631] (imputed)	N
1048	chr11	60729293	60729294	rs79538630	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q12.2	CD5/CD6	rs79538630-T	0.035	1E-9		1.213		Illumina [715631] (imputed)	N
1048	chr11	60760611	60760612	rs17824933	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	11q12.2	CD6	rs17824933-G	0.25	4E-9		1.18	[1.07-1.30]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1048	chr11	60776208	60776209	rs11230563	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	11q12.2	CD6	rs11230563-?		2E-6				Illumina [9725440] (imputed)	N
1048	chr11	60776208	60776209	rs11230563	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q12.2	CD6	rs11230563-?	NR	5E-15	(subset analysis)			Illumina [130052]	N
1048	chr11	60776208	60776209	rs11230563	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.2	NR	rs11230563-G	0.65	2E-8	(EA)	1.077956		Affymetrix, Illumina [~ 9000000] (imputed)	N
1048	chr11	60776208	60776209	rs11230563	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.2	NR	rs11230563-G	0.65	2E-14	(EA)	1.0845813		Affymetrix, Illumina [~ 9000000] (imputed)	N
1048	chr11	60776208	60776209	rs11230563	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.2	NR	rs11230563-G	0.65	4E-11	(EA)	1.0883777	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1048	chr11	60776208	60776209	rs11230563	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.2	CD5, CD6, PTGDR2	rs11230563-C	0.654	9E-13		1.085	[1.053-1.118]	Affymetrix, Illumina [1230000] (imputed)	N
1048	chr11	60776780	60776781	rs2074227	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CD6 levels	982 Scottish ancestry individuals		11q12.2	NR	rs2074227-C	0.32251	9E-17		0.41186	[0.31-0.51] unit decrease	Illumina [7903493] (imputed)	N
1048	chr11	60789642	60789643	rs55753183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q12.2		rs55753183-C	NR	3E-11		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1048	chr11	60789642	60789643	rs55753183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q12.2	CD6	rs55753183-C	0.342177	1E-12		0.016683403	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr11	60789642	60789643	rs55753183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs55753183-C	0.330911	1E-12				Affymetrix, Illumina [23472807] (imputed)	N
1048	chr11	60793329	60793330	rs34383631	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q12.2	CD6	rs34383631-A	0.39	4E-23		1.13		Illumina [161311]	N
1048	chr11	60793650	60793651	rs4939490	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q12.2	CD6	rs4939490-G	NR	2E-29		1.1237	NR	Affymetrix, Illumina [8278136] (imputed)	N
1048	chr11	60793650	60793651	rs4939490	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q12.2	NR	rs4939490-C	0.6068	2E-8		1.0346612	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
1048	chr11	60793650	60793651	rs4939490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q12.2		rs4939490-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1048	chr11	60793650	60793651	rs4939490	21244703	Wang JH	2011-01-18	Genome Med	Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data.	Multiple sclerosis	2,124 cases, 6,720 controls	1,618 cases, 1,988 controls	11q12.2	CD6	rs4939490-?	NR	1E-9		1.3	[1.19-1.42]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1048	chr11	60800100	60800101	rs3019536	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q12.2	NR	rs3019536-?	NR	7E-9				Affymetrix [NR]	N
1049	chr11	60828674	60828675	rs76738175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	11q12.2	NR	rs76738175-C	0.862922	6E-10		0.063049	[0.043-0.083] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1049	chr11	60828674	60828675	rs76738175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs76738175-C	0.97557	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
1049	chr11	60830366	60830367	rs3016175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q12.2		rs3016175-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	5E-6	(PWY-7199_pyrimidine_deoxyribonucleosides_salvage)	4.564958	Z-score increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	2E-7	(GO:0009231|BP|04|riboflavin biosynthetic process)	5.1726856	Z-score increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	1E-6	(PWY-5154_L-arginine_biosynthesis_III_(via_N-acetyl-L-citrulline))	4.8267756	Z-score increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	1E-6	(k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales)	4.8295755	unit increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	1E-6	(k__Bacteria|p__Bacteroidetes|c__Bacteroidia)	4.8295755	unit increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	11q12.2	CD6, CD5	rs650258-T	NR	1E-6	(k__Bacteria|p__Bacteroidetes)	4.8295755	unit increase	Illumina [8100000] (imputed)	N
1049	chr11	60832281	60832282	rs650258	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q12.2	CD5, CD6	rs650258-G	NR	2E-11		1.12	[1.1-1.13]	Illumina [465434]	N
1049	chr11	60833623	60833624	rs175126	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q12.2	CD6, CD5	rs175126-G	0.46	2E-7		1.06	[1.04-1.09]	Illumina [161311]	N
1049	chr11	60834042	60834043	rs11601370	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q12.2	SLC15A3, CD6, LOC105369325, CD5	rs11601370-?	NR	3E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1049	chr11	60834042	60834043	rs11601370	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q12.2	SLC15A3, CD6, LOC105369325, CD5	rs11601370-?		3E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1049	chr11	60857196	60857197	rs3016166	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs3016166-A	0.905335	3E-12		0.0469588	[0.034-0.06] unit increase	NR [11722792] (imputed)	N
1049	chr11	60857735	60857736	rs997386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q12.2	NR	rs997386-A	0.08904	3E-11		0.023195	[0.016-0.03] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1049	chr11	60858273	60858275	rs35018941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q12.2		rs35018941-T	0.087695	2E-12		0.0278622	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr11	60858273	60858275	rs35018941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q12.2		rs35018941-T	0.087682	1E-9		0.023980433	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr11	60863140	60863141	rs11518562	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q12.2	CD5	rs11518562-T	0.0365	1E-7		0.022	[0.014-0.03] unit increase	Affymetrix [~ 7740000] (imputed)	N
1049	chr11	60879246	60879247	rs77348582	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Emergencia abundance in stool	5,959 Finnish ancestry individuals	NA	11q12.2		rs77348582-A	0.112117	3E-8		0.0645194	[0.042-0.087] unit increase	Illumina [7980478] (imputed)	N
1049	chr11	60886518	60886519	rs79811054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs79811054-T	0.898606	9E-10		0.0403561	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
1049	chr11	60906449	60906450	rs508970	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q12.2	CD5	rs508970-A	0.49	4E-6	(EA)	0.07089	[0.041-0.101] unit increase	Illumina [8380626] (imputed)	N
1049	chr11	60906449	60906450	rs508970	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q12.2	CD5	rs508970-A	0.49	3E-6	(EA)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1049	chr11	60909580	60909581	rs595158	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	11q12.2	CD5	rs595158-C	0.5	6E-6		1.08	[1.05-1.12]	Illumina [133816] (imputed)	N
1049	chr11	60909580	60909581	rs595158	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	11q12.2	CD5	rs595158-?	NR	6E-6				Illumina [129464] (imputed)	N
1049	chr11	60909580	60909581	rs595158	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	11q12.2	CD5, VPS37C	rs595158-C	0.49	3E-8		1.09		Illumina [129464] (imputed)	N
1049	chr11	60913289	60913290	rs74483081	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11q12.2	VPS37C	rs74483081-C	0.1042	5E-6		0.0416	[0.024-0.059] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1049	chr11	60913599	60913600	rs616346	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q12.2	NR	rs616346-?	NR	2E-10				Affymetrix [NR]	N
1050	chr11	60965460	60965461	rs11230633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q12.2	NR	rs11230633-C	NR	2E-12		0.0184	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1050	chr11	60965460	60965461	rs11230633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q12.2	NR	rs11230633-C	NR	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1050	chr11	61014694	61014695	rs78243949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.2		rs78243949-G	0.975032	3E-11		0.083187	[0.059-0.108] unit increase	NR [11722792] (imputed)	N
1050	chr11	61018327	61018328	rs603061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.2		rs603061-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1051	chr11	61194524	61194524	rs138052480	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs138052480-?	NR	5E-10		0.0174337	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1052	chr11	61260753	61260754	rs35033583	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11q12.2	PPP1R32	rs35033583-T	NR	2E-6		0.36444396	[0.22-0.51] unit decrease	Illumina [> 6200000] (imputed)	N
1052	chr11	61272564	61272565	rs7125196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q12.2		rs7125196-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1052	chr11	61272564	61272565	rs7125196	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.2	MIR4488	rs7125196-C	0.8548	2E-8		0.2642	[0.17-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
1052	chr11	61272564	61272565	rs7125196	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q12.2	LOC105369329, MIR4488	rs7125196-T	0.77	3E-17	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1052	chr11	61272564	61272565	rs7125196	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q12.2	LOC105369329, MIR4488	rs7125196-T	0.77	2E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1052	chr11	61272564	61272565	rs7125196	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q12.2	LOC105369329, MIR4488	rs7125196-T	0.77	5E-25	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1052	chr11	61273699	61273700	rs3802951	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q12.2	NR	rs3802951-?	NR	3E-6		4.648	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1052	chr11	61277697	61277698	rs11230728	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q12.2	LRRC10B	rs11230728-?	NR	4E-8		0.0355837	[0.023-0.048] unit decrease	Illumina [4804024] (imputed)	N
1052	chr11	61277697	61277698	rs11230728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.2		rs11230728-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1052	chr11	61277697	61277698	rs11230728	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q12.2	NR	rs11230728-A	0.4619	5E-9	(East Asian)	0.0652	[0.043-0.087] unit increase	Illumina [6200000] (imputed)	N
1052	chr11	61277774	61277775	rs10897164	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q12.2	LRRC10B	rs10897164-A	0.78	1E-13	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1052	chr11	61277774	61277775	rs10897164	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q12.2	LRRC10B	rs10897164-A	0.78	2E-25	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1052	chr11	61278245	61278246	rs751984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q12.2		rs751984-C	NR	4E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1052	chr11	61278245	61278246	rs751984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11q12.2		rs751984-C	NR	1E-11		0.0469	[0.033-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1052	chr11	61278245	61278246	rs751984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q12.2		rs751984-C	NR	5E-14		0.0473	[0.035-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1052	chr11	61278245	61278246	rs751984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q12.2		rs751984-C	NR	2E-19		0.0224	[0.018-0.027] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1052	chr11	61278245	61278246	rs751984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q12.2		rs751984-C	NR	4E-22		0.0247	[0.02-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1052	chr11	61278245	61278246	rs751984	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q12.2	LRRC10B	rs751984-C	0.112856	8E-10		0.05871104	[0.04-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
1052	chr11	61278245	61278246	rs751984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q12.2		rs751984-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.46	4E-7	(Japanese)	0.3845	[0.24-0.53] unit increase	Illumina [6200000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.4601	3E-8	(Japanese)	0.2964	[0.19-0.4] unit increase	Illumina [6200000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.4601	5E-7	(Japanese)	0.0648	[0.04-0.09] unit increase	Illumina [6200000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.4601	1E-7	(Japanese)	0.2538	[0.16-0.35] unit increase	Illumina [6200000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q12.2	LRRC10B	rs751984-?	NR	1E-17				Affymetrix, Illumina [18800000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q12.2	LRRC10B	rs751984-?		2E-24				Affymetrix, Illumina [18800000] (imputed)	N
1052	chr11	61278245	61278246	rs751984	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q12.2	LRRC10B	rs751984-C	0.121	2E-6	(EA, initial)	0.542	[0.32-0.76] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1052	chr11	61278245	61278246	rs751984	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q12.2	LRRC10B	rs751984-C	0.121	2E-9	(EA, initial)	0.413	[0.28-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1052	chr11	61278245	61278246	rs751984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.2	LRRC10B	rs751984-T		4E-8		0.338	unit increase	Affymetrix [at least 2696785] (imputed)	N
1052	chr11	61278245	61278246	rs751984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q12.2	LRRC10B	rs751984-T		8E-16		0.303	unit increase	Affymetrix [at least 2696785] (imputed)	N
1052	chr11	61278245	61278246	rs751984	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.879	4E-9		0.4074	[0.27-0.54] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1052	chr11	61278245	61278246	rs751984	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11q12.2	LRRC10B	rs751984-T	0.879	4E-20		0.3755	[0.3-0.46] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1052	chr11	61278245	61278246	rs751984	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	11q12.2	LRRC10B, SYT7	rs751984-T	0.7863103100245852	8E-12		0.3289742	[0.23-0.42] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1052	chr11	61278589	61278590	rs751985	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	NR	rs751985-T	0.5253	2E-10	(East Asian)	0.4095	[0.28-0.54] unit decrease	Illumina [6200000] (imputed)	N
1052	chr11	61278589	61278590	rs751985	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	NR	rs751985-T	0.5253	6E-13	(East Asian)	0.3276	[0.24-0.42] unit decrease	Illumina [6200000] (imputed)	N
1052	chr11	61278589	61278590	rs751985	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q12.2	NR	rs751985-T	0.5252	2E-13	(East Asian)	0.301	[0.22-0.38] unit decrease	Illumina [6200000] (imputed)	N
1052	chr11	61282349	61282350	rs3741259	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs3741259-T	NR	2E-9	(PC(18:0;0-20:4;0))	0.2899	[0.2-0.38] unit decrease	Illumina [~ 9300000] (imputed)	N
1052	chr11	61282349	61282350	rs3741259	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs3741259-T	NR	2E-8	(PC(16:0;0-20:4;0))	0.2705	[0.18-0.37] unit decrease	Illumina [~ 9300000] (imputed)	N
1052	chr11	61282349	61282350	rs3741259	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs3741259-T	NR	6E-11	(CE(20:4;0))	0.3165	[0.22-0.41] unit decrease	Illumina [~ 9300000] (imputed)	N
1052	chr11	61291921	61291922	rs10897167	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q12.2	SYT7	rs10897167-A	NR	5E-8		0.037409622	[0.024-0.051] unit increase	Affymetrix [NR]	N
1052	chr11	61302243	61302244	rs11230735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs11230735-T	NR	9E-12		0.0974011	[0.069-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1052	chr11	61313524	61313525	rs77128898	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11q12.2	NR	rs77128898-C	0.0258449	2E-9		0.11842031	[0.08-0.157] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1052	chr11	61313524	61313525	rs77128898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q12.2		rs77128898-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1052	chr11	61313524	61313525	rs77128898	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q12.2	Intergenic	rs77128898-T	0.0358	3E-11	(MTAG)	0.041	[0.029-0.053] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1052	chr11	61313524	61313525	rs77128898	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11q12.2	Intergenic	rs77128898-T	0.0358	2E-9		0.0463	[0.031-0.061] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1052	chr11	61322787	61322788	rs377288794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs377288794-C	0.986961	5E-13		0.130688	[0.095-0.166] unit increase	NR [11722792] (imputed)	N
1053	chr11	61347032	61347033	rs75033012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.2		rs75033012-C	0.0391	1E-11		0.0258	[0.018-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1053	chr11	61376969	61376970	rs198746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198746-A	NR	4E-11		0.0933022	[0.066-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1053	chr11	61384562	61384563	rs12807999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q12.2		rs12807999-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1053	chr11	61398594	61398595	rs11230757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q12.2		rs11230757-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1053	chr11	61405852	61405853	rs11230759	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs11230759-C	0.993783	1E-19		0.228705	[0.18-0.28] unit increase	NR [11722792] (imputed)	N
1053	chr11	61416969	61416970	rs869112	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs869112-G	NR	2E-8	(PC(18:0;0-20:4;0))	0.2608	[0.17-0.35] unit increase	Illumina [~ 9300000] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1692120-A	NR	3E-10		0.0724442	[0.05-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1692120-A	NR	4E-11		0.0628941	[0.044-0.082] unit decrease	Affymetrix [87696910] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1692120-A	NR	2E-19		0.0843965	[0.066-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1692120-A	NR	1E-22		0.111447	[0.089-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1692120-A	NR	4E-10		0.0480564	[0.033-0.063] unit increase	Affymetrix [87696910] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	SYT7	rs1692120-?	NR	6E-6	(CE 20:5)	0.18147278	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	SYT7	rs1692120-?	NR	3E-6	(PC 38:4)	0.18390381	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	SYT7	rs1692120-?	NR	1E-6	(CE 20:4)	0.19341886	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1053	chr11	61417471	61417472	rs1692120	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	DAGLA	rs1692120-A	NR	1E-8		0.01	[NR] % decrease	Affymetrix, Illumina [NR]	N
1053	chr11	61438665	61438666	rs117338687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q12.2		rs117338687-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1053	chr11	61442491	61442492	rs7925523	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs7925523-G	0.7873	2E-59		0.3969	[0.35-0.44] unit decrease	Illumina [up to 1980188] (imputed)	N
1053	chr11	61446424	61446425	rs7931563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.2		rs7931563-T	0.6214	5E-14		0.0109	[0.0082-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1053	chr11	61446424	61446425	rs7931563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q12.2	Intergenic	rs7931563-T	0.6214	2E-14	(MTAG)	0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1053	chr11	61458594	61458595	rs11827215	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs11827215-G	0.7873	2E-10		0.0394	[0.027-0.052] unit increase	Illumina [up to 1980188] (imputed)	N
1053	chr11	61471677	61471678	rs198457	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q12.2	NR	rs198457-T	0.1886	5E-9		0.031535786	[0.021-0.042] unit decrease	NR [NR]	N
1053	chr11	61471677	61471678	rs198457	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q12.2	NR	rs198457-C	0.8075	5E-14		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
1053	chr11	61471677	61471678	rs198457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q12.2	NR	rs198457-T	0.18779776750139	3E-9		0.007003807	[0.0047-0.0093] unit decrease	NR [NR]	N
1053	chr11	61471677	61471678	rs198457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q12.2	NR	rs198457-T	0.18779776750139	1E-8		0.008670836	[0.0057-0.0117] unit decrease	NR [NR]	N
1053	chr11	61471677	61471678	rs198457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q12.2	NR	rs198457-T	0.18779776750139	1E-9		0.011377572	[0.0077-0.0151] unit decrease	NR [NR]	N
1053	chr11	61471677	61471678	rs198457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q12.2	NR	rs198457-T	0.18779776750139	2E-8		0.009303686	[0.006-0.0126] unit decrease	NR [NR]	N
1053	chr11	61471677	61471678	rs198457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q12.2	NR	rs198457-T	0.18779776750139	1E-9		0.007265015	[0.0049-0.0096] unit decrease	NR [NR]	N
1054	chr11	61473186	61473187	rs72918076	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11q12.2	NR	rs72918076-?	NR	5E-6		2070.9966	NR unit decrease	Illumina [2379855]	N
1054	chr11	61481927	61481928	rs2017861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11q12.2		rs2017861-A	NR	3E-10		0.0166	[0.012-0.022] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1054	chr11	61485155	61485156	rs10488693	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q12.2	NR	rs10488693-?	NR	7E-8	(Japanese)	0.8403	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1054	chr11	61487509	61487510	rs555405975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.2		rs555405975-T	0.998787	5E-8		0.321192	[0.21-0.44] unit increase	NR [11722792] (imputed)	N
1054	chr11	61487689	61487690	rs198430	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198430-A	NR	9E-11		0.0833515	[0.058-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61490485	61490486	rs198426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q12.2		rs198426-T	NR	9E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1054	chr11	61490485	61490486	rs198426	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198426-T	NR	5E-17		0.0839999	[0.064-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61490485	61490486	rs198426	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198426-T	NR	8E-17		0.101356	[0.078-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61490485	61490486	rs198426	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	DAGLA	rs198426-T	NR	3E-9		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61494326	61494327	rs4963243	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	11q12.2	DAGLA	rs4963243-A		2E-7	(AA)			Illumina [NR]	N
1054	chr11	61504182	61504183	rs420957	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q12.2	NR	rs420957-G	0.671451	1E-11		0.0156986	[0.011-0.02] unit decrease	NR [NR]	N
1054	chr11	61505695	61505696	rs198443	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q12.2	SLC15A3, DAGLA, MYRF, TMEM258, FEN1, FADS1, FADS2	rs198443-?		2E-24				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61506467	61506468	rs198442	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q12.2	NR	rs198442-C		1E-13		0.09	[0.07-0.11] unit increase	NR [NR]	N
1054	chr11	61506467	61506468	rs198442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q12.2		rs198442-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1054	chr11	61513399	61513400	rs61896068	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Fasting plasma glucose	2,732 Kuwaiti ancestry individuals	NA	11q12.2	DAGLA	rs61896068-?	NR	7E-7		4.963	NR unit increase	Illumina [up to 1520000] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	5E-11		0.113231	[0.079-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	8E-14		0.0950869	[0.07-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	9E-14		0.0754778	[0.056-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-12		0.0655471	[0.047-0.084] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	4E-13		0.0916095	[0.067-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-12		0.0643745	[0.047-0.082] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	8E-14		0.105026	[0.077-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	3E-12		0.126997	[0.091-0.163] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	2E-12		0.122025	[0.088-0.156] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-16		0.149362	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-15		0.14519	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	2E-11		0.0947131	[0.067-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	2E-12		0.0821166	[0.059-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	4E-12		0.0952527	[0.068-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-10		0.0957191	[0.067-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	1E-11		0.118265	[0.084-0.153] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	3E-10		0.0935966	[0.065-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	2E-34		0.140307	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	7E-33		0.166774	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	3E-18		0.081761	[0.063-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	4E-15		0.0765368	[0.057-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61518236	61518237	rs198421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198421-A	NR	3E-18		0.121375	[0.094-0.149] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61519985	61519986	rs2956395	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q12.2	RPLP0P2, DAGLA, MYRF, DKFZP434K028, TMEM258, MIR611, FEN1, FADS1	rs2956395-C	0.692	8E-7		1.06396	[1.04-1.09]	NR [9372253] (imputed)	N
1054	chr11	61521445	61521446	rs520987	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs520987-C	NR	3E-11		0.0867	[0.061-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-14		0.0797779	[0.059-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-12		0.0588989	[0.043-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	2E-13		0.0550359	[0.04-0.07] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	5E-12		0.0712063	[0.051-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-11		0.0498585	[0.035-0.064] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	5E-13		0.0828436	[0.06-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-11		0.100545	[0.071-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-18		0.130206	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-13		0.110136	[0.081-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	2E-10		0.0641731	[0.045-0.084] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	2E-11		0.0635481	[0.045-0.082] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-26		0.100056	[0.082-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	1E-27		0.123664	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	3E-14		0.0580727	[0.043-0.073] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	2E-17		0.0670159	[0.052-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524118	61524119	rs198462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198462-A	NR	2E-21		0.107608	[0.085-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	1E-14		0.0802098	[0.06-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	5E-13		0.0595869	[0.043-0.076] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	5E-13		0.05428	[0.04-0.069] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	6E-12		0.0708234	[0.051-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	2E-11		0.0491577	[0.035-0.064] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	8E-13		0.082002	[0.06-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	6E-12		0.102366	[0.073-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	4E-19		0.13159	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	6E-14		0.111812	[0.083-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	2E-10		0.0636968	[0.044-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	2E-11		0.0640137	[0.045-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	2E-26		0.0996347	[0.081-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	1E-27		0.123633	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	8E-14		0.0571658	[0.042-0.072] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	1E-16		0.0654696	[0.05-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61524973	61524974	rs198460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198460-A	NR	7E-21		0.105944	[0.084-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61527265	61527266	rs198472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198472-G	NR	1E-10		0.0746644	[0.052-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61527265	61527266	rs198472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198472-G	NR	7E-19		0.0960931	[0.075-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61527265	61527266	rs198472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198472-G	NR	2E-19		0.11875	[0.093-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61527265	61527266	rs198472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198472-G	NR	6E-14		0.0687904	[0.051-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61527265	61527266	rs198472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198472-G	NR	3E-10		0.0825669	[0.057-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61529266	61529267	rs11230796	29343252	Hendry LM	2018-01-17	BMC Med Genomics	Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort.	Systolic blood pressure	1,947 African ancestry individuals	NA	11q12.2	MYRF	rs11230796-G	0.06	2E-7		6.12	unit increase	Illumina [125906]	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	8E-17		0.0995452	[0.076-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	1E-12		0.0769865	[0.056-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	2E-10		0.0730338	[0.051-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	3E-21		0.0899964	[0.071-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	7E-19		0.076875	[0.06-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	1E-10		0.109553	[0.076-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	5E-20		0.159113	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	4E-12		0.121444	[0.087-0.156] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	4E-14		0.130139	[0.096-0.164] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	1E-11		0.0672109	[0.048-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	2E-16		0.135576	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	7E-11		0.086374	[0.06-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	2E-18		0.100756	[0.078-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	3E-10		0.0724909	[0.05-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	4E-34		0.131327	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	2E-33		0.157244	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	1E-10		0.0569503	[0.04-0.074] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	4E-19		0.0812616	[0.063-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs10792318-G	NR	4E-20		0.119726	[0.094-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	5E-13		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	1E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	4E-15		0.0217	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	3E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61531442	61531443	rs10792318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q12.2	NR	rs10792318-G	NR	1E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61533907	61533908	rs198467	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs198467-C	NR	7E-18		0.0818505	[0.063-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61533907	61533908	rs198467	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs198467-C	NR	2E-15		0.091894	[0.069-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61534009	61534010	rs2071213	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	11q12.2	FADS1, FADS2	rs2071213-A	0.69	3E-9		1.3333333	[NR]	Illumina [747089]	N
1054	chr11	61539019	61539020	rs149803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs149803-C	0.742798	3E-342		0.181609	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61539690	61539691	rs628993	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs628993-A	0.3403	4E-11	(SM d18:2/22:0)	0.0822	[0.058-0.107] unit increase	Illumina [~ 47000000] (imputed)	N
1054	chr11	61539690	61539691	rs628993	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.2		rs628993-A	0.1073	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	8E-26	(1-palmitoyl-2-linoleoyl-GPC (16:0/18:2))	0.251	[0.2-0.3] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	6E-29	(1-palmitoleoyl-2-linolenoyl-GPC (16:1/18:3)*)	0.271	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	4E-12	(1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)*)	0.169	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	3E-12	(1-stearoyl-2-linoleoyl-GPI (18:0/18:2))	0.173	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	2E-14	(1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2)*)	0.184	[0.14-0.23] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs11320420-GA	0.519382	1E-47	(1-linoleoyl-GPE (18:2)*)	0.347	[0.3-0.39] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs11320420-G	0.6224	6E-15	(SM d18:2/24:0)	0.1099	[0.082-0.137] unit decrease	Illumina [~ 47000000] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs11320420-G	0.6224	3E-9	(Cer d18:2/26:0)	0.0981	[0.066-0.13] unit decrease	Illumina [~ 47000000] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	9E-22	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.414984	[0.33-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	8E-36	(Lysophosphatidylcholine with acyl residue C16:1/Lysophosphatidylcholine with acyl residue C20:4)	0.526048	[0.45-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	7E-24	(Phosphatidylcholine with diacyl residue sum C38:5/Phosphatidylcholine with acyl-alkyl residue sum C34:1)	0.440607	[0.36-0.52] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	7E-15	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.342667	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	7E-15	(Phosphatidylcholine with diacyl residue sum C32:2/Phosphatidylcholine with diacyl residue sum C36:6)	0.347264	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	5E-24	(Phosphatidylcholine with diacyl residue sum C32:2/Phosphatidylcholine with diacyl residue sum C36:5)	0.440476	[0.36-0.52] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	5E-20	(Phosphatidylcholine with diacyl residue sum C32:1/Phosphatidylcholine with diacyl residue sum C36:5)	0.406939	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	5E-13	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.310827	[0.23-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	5E-12	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.304972	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	2E-19	(Phosphatidylcholine with acyl-alkyl residue sum C34:1/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.392775	[0.31-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	2E-17	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.372488	[0.29-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	1E-20	(Phosphatidylcholine with acyl-alkyl residue sum C34:1/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.402542	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	1E-18	(Phosphatidylcholine with acyl-alkyl residue sum C34:1/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.371764	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	3E-13	(Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.3281	[0.24-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	2E-10	(Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.281823	[0.2-0.37] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61542006	61542007	rs11320420	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs11320420-G	NR	1E-14	(Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.343113	[0.26-0.43] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	8E-10		0.0251335	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	2E-1519		0.34064	[0.33-0.35] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	8E-424		0.17929	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	1E-393		0.173993	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	2E-814		0.250864	[0.24-0.26] unit increase	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	2E-1260		0.30909	[0.3-0.32] unit increase	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	8E-940		0.264797	[0.26-0.27] unit increase	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.2		rs174528-T	0.622767	2E-1298		0.310466	[0.3-0.32] unit increase	NR [11722792] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	11q12.2		rs174528-C	0.345571497	3E-12		0.166259	[0.12-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	11q12.2		rs174528-C	0.345571497	3E-12		0.165902	[0.12-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large HDL	4,348 individuals	NA	11q12.2		rs174528-C	0.345571497	2E-10		0.151235	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL3	4,348 individuals	NA	11q12.2		rs174528-C	0.346976541	1E-10		0.149429	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL2	4,348 individuals	NA	11q12.2		rs174528-C	0.346727315	5E-8		0.127317	[0.082-0.173] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL	4,348 individuals	NA	11q12.2		rs174528-C	0.346976541	1E-8		0.131809	[0.086-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	11q12.2		rs174528-C	0.345571497	1E-10		0.152952	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large HDL	4,348 individuals	NA	11q12.2		rs174528-C	0.345571497	4E-10		0.149412	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL3	4,734 individuals	NA	11q12.2		rs174528-C	0.349499261	4E-12		0.154468	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL2	4,734 individuals	NA	11q12.2		rs174528-C	0.349149396	2E-9		0.134117	[0.09-0.178] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	11q12.2		rs174528-C	0.349428602	5E-10		0.138412	[0.095-0.182] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	11q12.2		rs174528-C	0.34829611	1E-9		0.137883	[0.094-0.182] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein A-I	4,734 individuals	NA	11q12.2		rs174528-C	0.349428602	1E-8		0.127143	[0.083-0.171] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61543498	61543499	rs174528	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	11q12.2		rs174528-T	0.62	9E-16		0.0724	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1054	chr11	61543498	61543499	rs174528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174528-C	0.382547	3E-61				Affymetrix, Illumina [24653286] (imputed)	N
1054	chr11	61543498	61543499	rs174528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q12.2	NR	rs174528-T	0.619906	4E-11		0.00773394	[0.0054-0.0101] unit increase	Affymetrix [16582621] (imputed)	N
1054	chr11	61543498	61543499	rs174528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q12.2	NR	rs174528-T	0.619906	2E-10		0.00793417	[0.0054-0.0104] unit increase	Affymetrix [16582614] (imputed)	N
1054	chr11	61543498	61543499	rs174528	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174528-C	NR	1E-10	(PCO(18:1;0-18:2;0))	0.2005	[0.14-0.26] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61543498	61543499	rs174528	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174528-C	NR	9E-14	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C40:5)	0.323791	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61543498	61543499	rs174528	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174528-C	NR	8E-15	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C40:5)	0.329919	[0.25-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61543498	61543499	rs174528	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174528-C	NR	5E-18	(Phosphatidylcholine with diacyl residue sum C32:3/Phosphatidylcholine with diacyl residue sum C36:5)	0.363709	[0.28-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61543498	61543499	rs174528	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174528-C	NR	4E-13	(Phosphatidylcholine with diacyl residue sum C40:5/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.314088	[0.23-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61543498	61543499	rs174528	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Vaccenic acid (18:1n-7) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174528-C	NR	7E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61543498	61543499	rs174528	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Vaccenic acid (18:1n-7) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174528-C	0.368	1E-8	(EA)	0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61543498	61543499	rs174528	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Gondoic acid (20:1n-9) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174528-C	0.364	3E-46	(EA)	0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61543498	61543499	rs174528	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174528-T	0.3337	2E-65		0.2088	[0.19-0.23] unit increase	Illumina [up to 1980188] (imputed)	N
1054	chr11	61543498	61543499	rs174528	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174528-T	0.632	4E-12	(Cis/trans-18:2, EA)	0.003	[0.0022-0.0038] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61543960	61543961	rs174529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q12.2	MYRF, TMEM258	rs174529-C	0.374138	6E-18		0.020011121	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61543960	61543961	rs174529	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174529-?	NR	2E-8		0.02497723	[0.016-0.034] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61543960	61543961	rs174529	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174529-?	NR	6E-6		1.709996	[0.97-2.45] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61543960	61543961	rs174529	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174529-?	NR	3E-10		2.136784	[1.47-2.8] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61543960	61543961	rs174529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.2		rs174529-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1054	chr11	61543960	61543961	rs174529	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs174529-?	NR	4E-18		0.0191264	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	NR	1E-48		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.643	9E-39	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.477	1E-6	(Hispanic)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.374	6E-6	(East Asian)	0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	NR	2E-25		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.643	3E-23	(EA)	0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	NR	4E-52		0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.643	8E-45	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.477	4E-6	(Hispanic)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	NR	4E-12		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174529-T	0.643	4E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61543960	61543961	rs174529	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174529-T	NR	5E-8		0.099	unit decrease	Illumina [27700000] (imputed)	N
1054	chr11	61543960	61543961	rs174529	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174529-T	NR	5E-8		0.099	[0.064-0.134] unit decrease	Illumina [27700000] (imputed)	N
1054	chr11	61543960	61543961	rs174529	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174529-C	0.39	4E-20		0.056	[0.044-0.068] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1054	chr11	61543960	61543961	rs174529	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174529-T	0.61	1E-11		0.041	[0.029-0.053] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1054	chr11	61545841	61545842	rs75158668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs75158668-T	NR	5E-13		0.264511	[0.19-0.34] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61545841	61545842	rs75158668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs75158668-T	NR	6E-12		0.304613	[0.22-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	11q12.2		rs174530-G	0.395779	3E-16		0.0336228	[0.026-0.042] unit increase	Illumina [13471903] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0892	[0.071-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	2E-21		0.0562	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.1777	[0.14-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0746	[0.059-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	9E-22		0.0461	[0.037-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.0857	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	2E-21		0.124	[0.099-0.149] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.2047	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.2048	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	1E-21		0.0806	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0783	[0.062-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.0995	[0.079-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.1488	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	2E-21		0.1097	[0.087-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.1237	[0.098-0.149] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	2E-21		0.0504	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0816	[0.065-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	2E-21		0.0822	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.0829	[0.066-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.1675	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.0754	[0.06-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0508	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	2E-21		0.0815	[0.065-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0901	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	9E-22		0.0815	[0.065-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	9E-22		0.0553	[0.044-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0669	[0.053-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.06	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	1E-21		0.0646	[0.051-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.1097	[0.087-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	9E-22		0.0817	[0.065-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	1E-21		0.0849	[0.067-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	2E-21		0.0561	[0.045-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	9E-22		0.0646	[0.051-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	9E-22		0.0548	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	8E-22		0.1298	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.0579	[0.046-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0915	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	9E-22		0.0532	[0.042-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.1091	[0.087-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	1E-21		0.0845	[0.067-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.1289	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	9E-22		0.0923	[0.073-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0528	[0.042-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	9E-22		0.0561	[0.045-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-A	NR	1E-21		0.09	[0.072-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0466	[0.037-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.0506	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.0871	[0.069-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	1E-21		0.0819	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0696	[0.055-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-G	NR	1E-21		0.0895	[0.071-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.1232	[0.098-0.148] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.0584	[0.046-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0738	[0.059-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.049	[0.039-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	2E-21		0.0805	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	1E-21		0.1241	[0.099-0.15] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	9E-22		0.0973	[0.077-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-T	NR	9E-22		0.0906	[0.072-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	8E-22		0.1206	[0.096-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	2E-21		0.1237	[0.098-0.149] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174530-C	NR	2E-21		0.075	[0.06-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61546591	61546592	rs174530	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174530-A	0.508788	3E-11	(sphingomyelin (d18:1/20:2, d18:2/20:1, d16:1/22:2)*)	0.165	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61546591	61546592	rs174530	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs174530-A	0.3755	1E-9	(C20:4)	0.102	[0.069-0.135] unit increase	Illumina [~ 47000000] (imputed)	N
1054	chr11	61546591	61546592	rs174530	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174530-G	NR	2E-12	(Phosphatidylcholine with diacyl residue sum C32:3/Phosphatidylcholine with diacyl residue sum C34:4)	0.303616	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61546591	61546592	rs174530	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	11q12.2	MYRF	rs174530-?	NR	1E-12		0.03134	[0.023-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q12.2		rs7943728-A	NR	7E-14		0.0227	[0.017-0.029] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0671	[0.046-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0783	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.0493	[0.034-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.0603	[0.041-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.0482	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.035	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0504	[0.035-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-A	NR	5E-10		0.0629	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.1197	[0.082-0.157] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0703	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0848	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.1035	[0.071-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-C	NR	5E-10		0.0652	[0.045-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7943728-T	NR	5E-10		0.0769	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs7943728-A	NR	1E-8	(PCO(16:0;0-20:3;0))	0.2778	[0.18-0.37] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61547067	61547068	rs7943728	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs7943728-A	NR	4E-19	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.484582	[0.38-0.59] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	5E-22		0.153278	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-17		0.131296	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-39		0.201151	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-15		0.124314	[0.094-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-21		0.144358	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-46		0.211382	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-23		0.153219	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-12		0.106242	[0.076-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-10		0.0977815	[0.068-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	5E-13		0.0861737	[0.063-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-12		0.0820635	[0.059-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-26		0.138059	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-21		0.115671	[0.092-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-14		0.101945	[0.076-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	5E-29		0.111064	[0.092-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-12		0.079975	[0.058-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-19		0.0975111	[0.076-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-71		0.193719	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-31		0.123352	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-10		0.0852594	[0.059-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-21		0.106209	[0.084-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-24		0.137981	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-19		0.0973933	[0.076-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-13		0.0742608	[0.054-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-24		0.0795108	[0.064-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-16		0.0956307	[0.073-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	7E-63		0.16504	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-45		0.14751	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-111		0.19463	[0.18-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-66		0.136043	[0.12-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-16		0.0631161	[0.048-0.078] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-17		0.0834855	[0.064-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-19		0.0795571	[0.062-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-45		0.153097	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-39		0.101553	[0.086-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-23		0.0934523	[0.075-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-48		0.176418	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-16		0.0840728	[0.064-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	5E-52		0.138042	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-17		0.0986584	[0.076-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-36		0.145576	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-21		0.0854115	[0.068-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-25		0.125957	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-15		0.0910786	[0.068-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-10		0.0695264	[0.048-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-22		0.113374	[0.09-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-20		0.0928108	[0.073-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-16		0.0828246	[0.063-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-39		0.134864	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-27		0.156509	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-17		0.0894343	[0.069-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-19		0.138074	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-49		0.230144	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-40		0.199076	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-11		0.102627	[0.072-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	7E-86		0.303176	[0.27-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-54		0.243008	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-25		0.164886	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	5E-24		0.153238	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-96		0.323541	[0.29-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-21		0.0850106	[0.067-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-11		0.0968724	[0.068-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-83		0.288802	[0.26-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-27		0.105016	[0.086-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-16		0.0813939	[0.062-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	9E-59		0.195605	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-75		0.192877	[0.17-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-29		0.139042	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-16		0.106777	[0.082-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-35		0.151529	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-49		0.147476	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-55		0.18405	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-25		0.130229	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-17		0.0896306	[0.069-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-29		0.136981	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-52		0.193747	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-27		0.10587	[0.087-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-26		0.165491	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-22		0.105982	[0.085-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-13		0.113417	[0.083-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-34		0.183366	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-42		0.20524	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-11		0.101844	[0.072-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-35		0.156781	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-10		0.0590374	[0.041-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-210		0.303652	[0.28-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-56		0.185906	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-31		0.139226	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	7E-16		0.0834395	[0.063-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-12		0.0846171	[0.061-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-196		0.35644	[0.33-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-18		0.0787331	[0.061-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	3E-10		0.0742906	[0.051-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-32		0.146131	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-33		0.129688	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	7E-91		0.162591	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-12		0.0699026	[0.05-0.089] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-20		0.0974893	[0.077-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-55		0.135263	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	2E-55		0.119549	[0.1-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-74		0.151315	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	4E-21		0.115943	[0.092-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	8E-99		0.250806	[0.23-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	6E-18		0.0903786	[0.07-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-24		0.109989	[0.089-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-10		0.0686083	[0.048-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs108499-T	NR	1E-16		0.0810542	[0.062-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61547236	61547237	rs108499	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	MYRF	rs108499-?	NR	1E-10	(XL_HDL_L)	0.050609946	NR unit decrease	Illumina [609262]	N
1054	chr11	61547236	61547237	rs108499	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs108499-T	0.3345	5E-11	(Cis/trans-18:2, EA)	0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61547950	61547951	rs72920160	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs72920160-C	NR	3E-10		0.0415	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	11q12.2		rs509360-G	0.39607	1E-12		0.0226586	[0.016-0.029] unit increase	Illumina [13479135] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	11q12.2		rs509360-G	0.395195	9E-9		0.0180541	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	5E-15		0.123558	[0.093-0.154] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-15		0.119264	[0.09-0.149] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0293	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0517	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0641	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0407	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0628	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	4E-12		0.0698266	[0.05-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	7E-26		0.116127	[0.095-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-13		0.0790231	[0.058-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0584	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0499	[0.035-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0396	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0335	[0.024-0.043] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	7E-27		0.107261	[0.088-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-14		0.0819685	[0.061-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-46		0.124903	[0.11-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-19		0.0723963	[0.057-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-14		0.0836699	[0.062-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-14		0.0934584	[0.07-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-17		0.0782071	[0.06-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	5E-11		0.0766729	[0.054-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-12		0.0631538	[0.045-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0796964	[0.056-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0393	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.084	[0.059-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0368	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.058	[0.041-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	7E-19		0.0930929	[0.073-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-16		0.130365	[0.099-0.162] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-13		0.113137	[0.083-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	6E-28		0.172598	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	5E-21		0.151333	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-12		0.110422	[0.079-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-42		0.216481	[0.19-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-30		0.175506	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	9E-19		0.108639	[0.085-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-28		0.11795	[0.097-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-12		0.0859473	[0.061-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-13		0.0914987	[0.067-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-11		0.065738	[0.046-0.086] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-15		0.0954466	[0.072-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-10		0.067347	[0.046-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-12		0.0860074	[0.062-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-18		0.110647	[0.085-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-11		0.0666797	[0.047-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-13		0.116119	[0.085-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-10		0.0702147	[0.049-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	6E-14		0.115766	[0.086-0.146] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-15		0.121004	[0.091-0.151] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-10		0.0812969	[0.056-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0536	[0.038-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0801	[0.056-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.1439	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0396	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.064	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.059	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.216	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0584	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.1102	[0.078-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0396	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0681	[0.048-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.2283	[0.16-0.3] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0397	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-11		0.05	[0.035-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.052	[0.037-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0611	[0.043-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0384	[0.027-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0396	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0506	[0.036-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.057	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.1066	[0.075-0.138] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0629	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0541	[0.038-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0398	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0885	[0.062-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.1122	[0.079-0.145] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-74		0.181706	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-20		0.109893	[0.087-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	9E-11		0.079359	[0.055-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	1E-63		0.203922	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	4E-11		0.0826168	[0.058-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-G	NR	3E-11		0.0506	[0.036-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	3E-18		0.0948817	[0.074-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	5E-28		0.0895105	[0.074-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	8E-20		0.0800055	[0.063-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-21		0.0737164	[0.059-0.089] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	7E-22		0.0810654	[0.065-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs509360-A	NR	2E-31		0.141026	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-T	NR	3E-11		0.0919	[0.065-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs509360-C	NR	3E-11		0.0563	[0.04-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61548558	61548559	rs509360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	11q12.2	NR	rs509360-A	0.598722	1E-12		0.026754	[0.019-0.034] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1054	chr11	61548558	61548559	rs509360	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	11q12.2	MYRF	rs509360-?	NR	3E-8		0.02414	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1054	chr11	61548558	61548559	rs509360	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs509360-G	0.6730327	3E-8		0.1087	[0.07-0.147] unit increase	Illumina [up to 1980188] (imputed)	N
1054	chr11	61548558	61548559	rs509360	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs509360-A	0.3148	6E-10	(Cis/trans-18:2, EA)	0.0031	[0.0021-0.0041] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-10		0.103571	[0.071-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-10		0.101423	[0.07-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-16		0.131016	[0.1-0.162] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	9E-20		0.139104	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-12		0.0956887	[0.069-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-22		0.110399	[0.088-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-10		0.070246	[0.049-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-12		0.0975214	[0.07-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-12		0.0584473	[0.042-0.075] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	4E-17		0.0858705	[0.066-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-19		0.0980725	[0.077-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-32		0.106664	[0.089-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-21		0.0775304	[0.062-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-17		0.0956705	[0.074-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-19		0.0719514	[0.056-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	5E-12		0.0673679	[0.048-0.086] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	6E-21		0.117082	[0.093-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-18		0.0830544	[0.065-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	5E-15		0.0936607	[0.07-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-12		0.104984	[0.076-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-19		0.144224	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-14		0.117495	[0.087-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	9E-33		0.190268	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	5E-11		0.107135	[0.075-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	4E-10		0.0982183	[0.067-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-27		0.175006	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	7E-27		0.165781	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-12		0.0723753	[0.052-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-23		0.125452	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-19		0.0986915	[0.077-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	7E-11		0.0838121	[0.059-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-11		0.0855785	[0.061-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	9E-25		0.10617	[0.086-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	5E-26		0.12869	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-10		0.0836161	[0.058-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	8E-20		0.119979	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	8E-14		0.115857	[0.085-0.146] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-14		0.101324	[0.076-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-68		0.177972	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-18		0.106319	[0.082-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-12		0.0876207	[0.063-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-67		0.215066	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-11		0.0849408	[0.06-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-33		0.100764	[0.084-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-18		0.0786744	[0.061-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	1E-16		0.0654116	[0.05-0.081] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-28		0.0954195	[0.079-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	3E-42		0.168007	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	5E-11		0.0715213	[0.05-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174532-A	NR	2E-11		0.0747936	[0.053-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61548873	61548874	rs174532	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	11q12.2	MYRF	rs174532-A	0.1	1E-8		0.267	[0.18-0.36] unit increase	Illumina [621723]	N
1054	chr11	61549024	61549025	rs174533	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174533-G	0.655769	3E-366		0.169853	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	4E-21		0.0603	[0.048-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	4E-21		0.0807	[0.064-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	4E-21		0.0499	[0.04-0.06] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.0731	[0.058-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	5E-21		0.0744	[0.059-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	2E-21		0.1288	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	4E-21		0.0551	[0.044-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	4E-21		0.0856	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	5E-21		0.0549	[0.044-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.0799	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0508	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	4E-21		0.1083	[0.086-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	4E-21		0.0772	[0.061-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.0904	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.099	[0.078-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	4E-21		0.0854	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.0785	[0.062-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	4E-21		0.0499	[0.04-0.06] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.0799	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.064	[0.051-0.077] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.0979	[0.078-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0553	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	4E-21		0.1265	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0552	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0738	[0.059-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0554	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.1546	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.1215	[0.096-0.147] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.0852	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0564	[0.045-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	2E-21		0.0977	[0.078-0.118] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.1229	[0.097-0.148] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.1254	[0.1-0.151] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0554	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	2E-21		0.0825	[0.065-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0831	[0.066-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.047	[0.037-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0982	[0.078-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.0829	[0.066-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.0835	[0.066-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.1239	[0.098-0.15] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0856	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.0748	[0.059-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0855	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.0519	[0.041-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.0807	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.0808	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	3E-21		0.0886	[0.07-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.0512	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.2032	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.0551	[0.044-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	3E-21		0.0503	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.1088	[0.086-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.0838	[0.067-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	4E-21		0.0796	[0.063-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	3E-21		0.0545	[0.043-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-A	NR	3E-21		0.0799	[0.063-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	4E-21		0.0419	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	5E-21		0.1001	[0.079-0.121] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-T	NR	2E-21		0.124	[0.098-0.15] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	2E-21		0.0813	[0.064-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-G	NR	4E-21		0.0746	[0.059-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174533-C	NR	4E-21		0.0552	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549024	61549025	rs174533	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174533-G	0.530496	5E-11	(1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)*)	0.164	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61549024	61549025	rs174533	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174533-G	0.530496	4E-98	(1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)*)	0.517	[0.47-0.57] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61549024	61549025	rs174533	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MYRF	rs174533-G	0.530496	4E-83	(arachidonate (20:4n6))	0.483	[0.43-0.53] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61549024	61549025	rs174533	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11q12.2	FADS1, FEN1, FADS2, MYRF, TMEM258	rs174533-A		1E-28		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q12.2	NR	rs174533-G	0.652448	1E-28		0.0096524	[0.0079-0.0114] unit increase	Affymetrix [16582909] (imputed)	N
1054	chr11	61549024	61549025	rs174533	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q12.2	NR	rs174533-G	0.652448	2E-26		0.0103444	[0.0084-0.0123] unit increase	Affymetrix [16582965] (imputed)	N
1054	chr11	61549024	61549025	rs174533	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	11q12.2	NR	rs174533-?	NR	6E-7		0.078	[0.047-0.109] unit decrease	Illumina [1770809] (imputed)	N
1054	chr11	61549024	61549025	rs174533	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q12.2	MYRF, FEN1, FADS1	rs174533-G	0.6739	1E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1054	chr11	61549024	61549025	rs174533	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174533-A	NR	5E-17	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.365851	[0.28-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61549024	61549025	rs174533	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174533-A	0.38	2E-9	(Asian initial, BMI unadjusted)	0.057	[0.037-0.077] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174533-A	0.38	1E-9	(Asian initial, BMI unadjusted)	0.062	[0.042-0.082] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174533-A	0.4	5E-7	(BMI unadjusted)	0.057	[0.035-0.079] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11q12.2	MYRF, TMEM258	rs174533-A	0.3459	4E-21		0.03524342	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11q12.2	MYRF, TMEM258	rs174533-A	0.346	3E-14		0.02827519	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61549024	61549025	rs174533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	11q12.2	MYRF, TMEM258	rs174533-A	0.346	2E-11		0.02482957	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	11q12.2		rs174534-G	0.387707	2E-8		0.0210397	[0.014-0.028] unit increase	Illumina [13477028] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.0528	[0.042-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	9E-21		0.0824	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	8E-21		0.0528	[0.042-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	9E-21		0.1242	[0.098-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	5E-21		0.0804	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.0449	[0.035-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.1204	[0.095-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.1211	[0.096-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	9E-21		0.1649	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	8E-21		0.0965	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.0814	[0.064-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	6E-21		0.0894	[0.071-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	8E-21		0.0825	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.0839	[0.066-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	5E-21		0.102	[0.081-0.123] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.0837	[0.066-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.0713	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	8E-21		0.1056	[0.083-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	7E-21		0.0838	[0.066-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	6E-21		0.0962	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	7E-21		0.1055	[0.084-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	6E-21		0.0741	[0.059-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	8E-21		0.0822	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	7E-21		0.0421	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.085	[0.067-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	5E-21		0.0792	[0.063-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	6E-21		0.0978	[0.077-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	6E-21		0.0979	[0.078-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	6E-21		0.0779	[0.062-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	5E-21		0.2009	[0.16-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	7E-21		0.0964	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.1659	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	5E-21		0.0804	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	5E-21		0.0804	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	7E-21		0.0809	[0.064-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	7E-21		0.0536	[0.042-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	5E-21		0.1023	[0.081-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	8E-21		0.1014	[0.08-0.123] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	6E-21		0.0778	[0.062-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.1209	[0.096-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	5E-21		0.0781	[0.062-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	8E-21		0.0699	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.0985	[0.078-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	7E-21		0.1067	[0.084-0.129] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	7E-21		0.0876	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	7E-21		0.1058	[0.084-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	6E-21		0.0706	[0.056-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.1056	[0.083-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	6E-21		0.0421	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.0949	[0.075-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	6E-21		0.1998	[0.16-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-A	NR	5E-21		0.0549	[0.044-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.0771	[0.061-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	7E-21		0.0737	[0.058-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-G	NR	5E-21		0.1241	[0.098-0.15] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-C	NR	5E-21		0.0841	[0.067-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	5E-21		0.0817	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174534-T	NR	8E-21		0.0596	[0.047-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61549457	61549458	rs174534	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.2	MYRF	rs174534-A	0.647163	3E-18		0.0168583	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1054	chr11	61549457	61549458	rs174534	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174534-G	0.6663	1E-29		0.177	[0.15-0.21] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61549457	61549458	rs174534	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174534-A	0.6658	4E-11	(Cis/trans-18:2, EA)	0.0029	[0.0021-0.0037] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.2		rs174535-T	0.651478	2E-9		0.0247728	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial docosahexaenoic acid (22:6)	4,348 individuals	NA	11q12.2		rs174535-C	0.3243461	6E-11		0.152813	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-33		0.189529	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-16		0.12739	[0.096-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-25		0.160375	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-57		0.243703	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-25		0.158915	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-31		0.177202	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-58		0.236084	[0.21-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-28		0.165884	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-16		0.125402	[0.095-0.155] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	7E-14		0.114325	[0.084-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-16		0.124242	[0.095-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0773	[0.061-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.1046	[0.083-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0999	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	2E-20		0.0966	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-10		0.0730848	[0.051-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-16		0.0974905	[0.074-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	7E-16		0.0925259	[0.07-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	9E-21		0.0698	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-40		0.17391	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-25		0.12336	[0.1-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-19		0.118808	[0.093-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0806	[0.064-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0826	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0961	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-30		0.111845	[0.093-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-18		0.0990401	[0.077-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-22		0.104059	[0.083-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-91		0.219009	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-43		0.145673	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-14		0.10241	[0.076-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-12		0.0720897	[0.051-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-10		0.0518379	[0.036-0.068] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-28		0.12225	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-39		0.174412	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-30		0.121563	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.1135	[0.09-0.137] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0802	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.096	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.089	[0.07-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0721	[0.057-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.096	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	2E-20		0.0935	[0.074-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-17		0.0862908	[0.066-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-27		0.0853838	[0.07-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-21		0.110024	[0.087-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.0833	[0.066-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.0832	[0.066-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-13		0.0706073	[0.052-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-78		0.182927	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-63		0.173805	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-147		0.222785	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-76		0.145034	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-20		0.0694477	[0.055-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-19		0.0871667	[0.068-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-24		0.0897604	[0.073-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-56		0.169756	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	7E-50		0.113966	[0.099-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-29		0.105686	[0.087-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-64		0.202657	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-14		0.0563754	[0.042-0.071] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-22		0.0981759	[0.078-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-69		0.159345	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-22		0.112963	[0.09-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-46		0.164379	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-28		0.0975072	[0.08-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-31		0.140255	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-18		0.099797	[0.077-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-16		0.0887988	[0.068-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-31		0.135389	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0802	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0472	[0.037-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.1	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0803	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-22		0.0970259	[0.077-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-23		0.0996352	[0.08-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-49		0.151012	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-34		0.172257	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-26		0.112014	[0.091-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-28		0.16879	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-66		0.265842	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-50		0.220702	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-10		0.0585932	[0.04-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-16		0.128357	[0.098-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-115		0.349135	[0.32-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-58		0.250061	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-25		0.161778	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-33		0.180779	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-125		0.367428	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-22		0.087157	[0.07-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-16		0.119587	[0.091-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-107		0.326371	[0.3-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-31		0.113038	[0.094-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-24		0.099495	[0.08-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-76		0.22164	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-88		0.208156	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-38		0.158963	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-24		0.129439	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-43		0.166645	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	7E-62		0.164373	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-74		0.212549	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-32		0.149081	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-25		0.108129	[0.088-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-40		0.15965	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-71		0.224168	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-36		0.122154	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-30		0.176262	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-29		0.121564	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-15		0.120459	[0.091-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-36		0.188453	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-50		0.221994	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-12		0.106522	[0.077-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-46		0.179229	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-14		0.0711495	[0.053-0.089] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-11		0.0863264	[0.061-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0998	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.1	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0964	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	9E-21		0.0687	[0.054-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0546	[0.043-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0699	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0802	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0803	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0416	[0.033-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0802	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.1002	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	9E-21		0.0918	[0.073-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	9E-21		0.0718	[0.057-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0858	[0.068-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0921	[0.073-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	9E-21		0.0783	[0.062-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.096	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0803	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0758	[0.06-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-21		0.0416	[0.033-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	2E-20		0.0556	[0.044-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.0501	[0.04-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0577	[0.046-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.0829	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.1214	[0.096-0.147] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.091	[0.072-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0417	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-10		0.0704208	[0.048-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0823	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.096	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0418	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	2E-20		0.1042	[0.082-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-275		0.345874	[0.33-0.36] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-69		0.205211	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-41		0.161166	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-17		0.0869047	[0.067-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-16		0.0986002	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-251		0.401289	[0.38-0.42] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-22		0.0870922	[0.07-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.0964	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-12		0.0858565	[0.062-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	1E-20		0.0769	[0.061-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-41		0.16523	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0802	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-38		0.138087	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-A	NR	1E-20		0.1062	[0.084-0.129] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	4E-114		0.181376	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-14		0.0764883	[0.057-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-29		0.116329	[0.096-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-69		0.151382	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-66		0.130449	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	8E-97		0.172239	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-11		0.0744901	[0.053-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-12		0.0776056	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-29		0.137935	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	6E-12		0.073421	[0.053-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-141		0.298137	[0.28-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	5E-32		0.122316	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-41		0.143569	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	2E-13		0.0782677	[0.057-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	3E-23		0.0961197	[0.077-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-10		0.0592916	[0.041-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-G	NR	1E-20		0.0774	[0.061-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	9E-21		0.0823	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-C	NR	1E-20		0.0968	[0.076-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174535-T	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551355	61551356	rs174535	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11q12.2		rs174535-T	0.649	2E-16				Affymetrix [10369434] (imputed)	N
1054	chr11	61551355	61551356	rs174535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q12.2	MYRF	rs174535-C	0.350648	5E-19		0.0214312	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61551355	61551356	rs174535	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q12.2	NR	rs174535-T		3E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
1054	chr11	61551355	61551356	rs174535	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	MYRF	rs174535-?	NR	5E-18	(PUFA_FA)	0.09375711	NR unit decrease	Illumina [609262]	N
1054	chr11	61551355	61551356	rs174535	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	MYRF	rs174535-?	NR	4E-10	(S_HDL_TG)	0.05076305	NR unit increase	Illumina [609262]	N
1054	chr11	61551355	61551356	rs174535	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	MYRF	rs174535-?	NR	8E-13	(PUFA_FA)	0.08879176	NR unit decrease	Illumina [609262]	N
1054	chr11	61551355	61551356	rs174535	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	11q12.2	C11orf9	rs174535-?	NR	2E-8				NR [NR]	N
1054	chr11	61551355	61551356	rs174535	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	11q12.2	MYRF	rs174535-T	0.648	3E-11		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q12.2	MYRF	rs174535-T	NR	7E-12		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	11q12.2	MYRF	rs174535-T	0.631	4E-9		1.1494253	[1.10-1.20]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1054	chr11	61551355	61551356	rs174535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11q12.2		rs174535-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q12.2	MYRF	rs174535-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
1054	chr11	61551355	61551356	rs174535	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174535-T	0.6692	1E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	C11orf9, C11orf10, FADS2, FADS1, FEN1	rs174535-?	0.33	2E-12	(OA)	0.138	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174535-T	0.67	3E-36	(1-linoleoylglycerophosphoethanolamine)	0.044	[0.036-0.052] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174535-T	0.66	2E-94	(1-arachidonoylglycerophosphocholine)	0.056	[0.05-0.062] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	8E-6	(TAG 56:7)	0.15801543	[0.089-0.227] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	6E-9	(CE 18:3)	0.20726913	[0.14-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	4E-13	(PC 40:6)	0.25884056	[0.19-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	3E-6	(TAG 58:9)	0.1659936	[0.096-0.236] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	1E-7	(PC 38:6)	0.19174513	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf10	rs174535-?	NR	1E-32	(PC 38:5)	0.40886575	[0.34-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61551355	61551356	rs174535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf9	rs174535-T	NR	1E-151		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61551355	61551356	rs174535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf9	rs174535-T	NR	6E-58		0.08	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61551926	61551927	rs174536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	11q12.2		rs174536-A	0.653765	2E-15		0.0339828	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	3E-20		0.0692	[0.054-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	3E-20		0.0826	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0408	[0.032-0.049] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.092	[0.072-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0857	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.041	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0989	[0.078-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0739	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0715	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	3E-20		0.098	[0.077-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.054	[0.043-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0731	[0.058-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0878	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0716	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0829	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	3E-20		0.1004	[0.079-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0528	[0.042-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0986	[0.078-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.059	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0541	[0.043-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.1105	[0.087-0.134] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0701	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0558	[0.044-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0771	[0.061-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0867	[0.068-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0495	[0.039-0.06] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0997	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0908	[0.072-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0583	[0.046-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0567	[0.045-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0671	[0.053-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.1103	[0.087-0.134] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.041	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0667	[0.053-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0881	[0.069-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0948	[0.075-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.077	[0.061-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	3E-20		0.1006	[0.079-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0758	[0.06-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0898	[0.071-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0584	[0.046-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	3E-20		0.0826	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0898	[0.071-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0766	[0.06-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.088	[0.069-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0995	[0.078-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.0724	[0.057-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0723	[0.057-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0991	[0.078-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	3E-20		0.0715	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	2E-20		0.059	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	3E-20		0.0398	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0542	[0.043-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-C	NR	2E-20		0.0809	[0.064-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	3E-20		0.059	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-T	NR	3E-20		0.047	[0.037-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0413	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	2E-20		0.0414	[0.033-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-A	NR	2E-20		0.0715	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174536-G	NR	3E-20		0.0735	[0.058-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	7E-13	(324 ms)	0.0424389	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	6E-16	(316 ms)	0.0475703	[0.036-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	6E-14	(332 ms)	0.0445196	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	5E-10	(360 ms)	0.0371976	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	5E-10	(358 ms)	0.0370347	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	4E-13	(346 ms)	0.04319	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	4E-12	(354 ms)	0.0414535	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	4E-11	(362 ms)	0.0393803	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	4E-11	(352 ms)	0.039396	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	4E-11	(294 ms)	0.0391674	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	3E-14	(338 ms)	0.0454656	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	3E-14	(322 ms)	0.044671	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	3E-11	(356 ms)	0.039724	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	3E-11	(350 ms)	0.0395351	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	3E-10	(292 ms)	0.0375174	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	2E-9	(288 ms)	0.0356901	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	2E-8	(366 ms)	0.0336589	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	2E-14	(334 ms)	0.0453342	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	2E-14	(306 ms)	0.0453639	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	2E-12	(348 ms)	0.0418708	[0.03-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	1E-9	(290 ms)	0.0361214	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	1E-8	(286 ms)	0.0340269	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	1E-14	(308 ms)	0.0455992	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	1E-13	(304 ms)	0.0436597	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2	rs174536-A	0.663821	1E-10	(364 ms)	0.0382776	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174536-C	NR	7E-9	(PEO(16:1;0-18:2;0))	0.1941	[0.13-0.26] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	11q12.2	FADS2	rs174536-A	0.650555	3E-7		0.345539	[0.21-0.48] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	11q12.2	FEN1, FADS2, TMEM258, MYRF	rs174536-C	0.66	2E-30		0.399	[0.33-0.47] unit increase	Affymetrix [19941912] (imputed)	N
1054	chr11	61551926	61551927	rs174536	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174536-C	0.66689085	8E-8		0.1037	[0.066-0.142] unit increase	Illumina [up to 1980188] (imputed)	N
1054	chr11	61551926	61551927	rs174536	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	MYRF, FADS1, FADS2, FADS3	rs174536-A	0.673	5E-59	(Phosphatidylcholine diacyl C36:5)	0.1315	[0.12-0.15] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61551926	61551927	rs174536	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174536-A	0.6693	1E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61551926	61551927	rs174536	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf9	rs174536-A	NR	1E-63		0.02	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	5E-126		0.0979477	[0.09-0.106] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q12.2		rs174537-G	0.656566	2E-45		0.0594007	[0.051-0.068] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	5E-54		0.0647702	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	2E-81		0.0781644	[0.07-0.086] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	1E-51		0.0629678	[0.055-0.071] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q12.2		rs174537-G	0.656566	5E-60		0.0686296	[0.06-0.077] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	1E-90		0.0832173	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	3E-109		0.0916644	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	9E-12		0.0291804	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	3E-78		0.0760072	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q12.2		rs174537-G	0.656875	4E-46		0.0592558	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q12.2		rs174537-G	0.656566	3E-53		0.0636735	[0.056-0.072] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	1E-41		0.0568835	[0.049-0.065] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174537-G	0.656882	2E-87		0.0808446	[0.073-0.089] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q12.2		rs174537-G	0.656875	8E-20		0.0386689	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	4E-20		0.1163	[0.091-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0858	[0.068-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.064	[0.05-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	5E-20		0.0758	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	5E-20		0.0537	[0.042-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.0983	[0.077-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0771	[0.061-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0782	[0.062-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.0873	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	5E-20		0.1006	[0.079-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0713	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.0825	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0537	[0.042-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.0769	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	3E-20		0.0969	[0.076-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.1163	[0.091-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.1243	[0.098-0.151] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0545	[0.043-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	4E-20		0.0709	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.0904	[0.071-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.0606	[0.048-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.0875	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.0981	[0.077-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0396	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	4E-20		0.0539	[0.042-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.0842	[0.066-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0825	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.1001	[0.079-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.1058	[0.083-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0827	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.0751	[0.059-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.0698	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.0972	[0.076-0.118] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	3E-20		0.0876	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.1022	[0.08-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.1748	[0.14-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	4E-20		0.1164	[0.092-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.09	[0.071-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0768	[0.061-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.0783	[0.062-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.0688	[0.054-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0757	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.0682	[0.054-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.1161	[0.091-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0826	[0.065-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.1147	[0.09-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	4E-20		0.0676	[0.053-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0967	[0.076-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.0733	[0.058-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.0753	[0.059-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.0997	[0.078-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.105	[0.083-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	5E-20		0.0691	[0.054-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	3E-20		0.0705	[0.055-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	4E-20		0.0705	[0.055-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	4E-20		0.0713	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-C	NR	3E-20		0.1002	[0.079-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	5E-20		0.0709	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-A	NR	5E-20		0.1169	[0.092-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	3E-20		0.0919	[0.072-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	3E-20		0.0959	[0.076-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-T	NR	4E-20		0.0596	[0.047-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174537-G	NR	5E-20		0.0709	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61552679	61552680	rs174537	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	11q12.2	MYRF	rs174537-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q12.2	NR	rs174537-G	0.654276	6E-21		0.0122602	[0.0097-0.0148] unit increase	Affymetrix [16585854] (imputed)	N
1054	chr11	61552679	61552680	rs174537	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q12.2	NR	rs174537-G	0.654276	2E-21		0.0139815	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
1054	chr11	61552679	61552680	rs174537	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q12.2	FADS1	rs174537-?	NR	1E-24		0.02276	[0.018-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61552679	61552680	rs174537	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	11q12.2	MYRF	rs174537-G	0.62	8E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q12.2	MYRF	rs174537-T	0.312	2E-86		0.0617	[0.056-0.068] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q12.2	MYRF	rs174537-T	0.3123	2E-22		0.0305	[0.024-0.037] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	7E-14	(Phosphatidylcholine with acyl-alkyl residue sum C40:5/Phosphatidylcholine with acyl-alkyl residue sum C44:4)	0.32504	[0.24-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	2E-19	(Phosphatidylcholine with acyl-alkyl residue sum C36:5/Sphingomyelin with acyl residue sum C16:0)	0.389852	[0.31-0.47] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	9E-13	(Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.317125	[0.23-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	5E-10	(Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.272908	[0.19-0.36] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	2E-14	(Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.336305	[0.25-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MYRF	rs174537-T	NR	1E-16	(Phosphatidylcholine with diacyl residue sum C38:5)	0.357607	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61552679	61552680	rs174537	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	11q12.2	C11orf9	rs174537-G	0.601	2E-7		1.111	[1.068-1.155]	Illumina [6774630] (imputed)	N
1054	chr11	61552679	61552680	rs174537	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	11q12.2	NR	rs174537-G	0.59	9E-21		1.16	[1.12-1.19]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174537-T	0.6648	4E-164		0.5254	[0.49-0.56] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61552679	61552680	rs174537	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.2	NR	rs174537-A	0.3313	2E-12	(EA)	1.0922968	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	MYRF, FADS1, FADS2, FADS3	rs174537-T	0.3202	3E-19	(Phosphatidylcholine diacyl C36:2)	0.0356	[0.028-0.043] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61552679	61552680	rs174537	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174537-T	0.3296	8E-14	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61552679	61552680	rs174537	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	11q12.2	MYRF, FADS1, FADS2, FEN1	rs174537-G	0.59	9E-21	(East Asian)	1.16	[1.12-1.19]	Affymetrix, Illumina [2400000] (imputed)	N
1054	chr11	61553200	61553201	rs17762402	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs17762402-A	NR	6E-11		0.102132	[0.072-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61553200	61553201	rs17762402	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs17762402-A	NR	6E-15		0.137803	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61553200	61553201	rs17762402	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs17762402-A	NR	4E-14		0.16238	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	11q12.2		rs61896141-C	NR	1E-10		0.0745	[0.052-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-T	NR	7E-11		0.0742	[0.052-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-A	NR	8E-11		0.0885	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	8E-11		0.0825	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-A	NR	7E-11		0.0882	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	8E-11		0.0717	[0.05-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-A	NR	7E-11		0.0363	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	7E-11		0.0576	[0.04-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	7E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-A	NR	7E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-G	NR	8E-11		0.0395	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	8E-11		0.0395	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-A	NR	8E-11		0.0825	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-C	NR	7E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-G	NR	7E-11		0.0621	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-T	NR	8E-11		0.0883	[0.062-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-G	NR	8E-11		0.0771	[0.054-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61896141-G	NR	7E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q12.2		rs61896141-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1054	chr11	61556038	61556039	rs61896141	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q12.2	MYRF	rs61896141-C	0.1893	1E-18		1.089	NR	Affymetrix [9154080] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	2E-10		0.168246	[0.12-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	4E-16		0.171606	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	8E-15		0.297809	[0.22-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	1E-14		0.281597	[0.21-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	3E-10		0.186827	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	3E-10		0.161576	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	2E-20		0.220859	[0.17-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	5E-19		0.259777	[0.2-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	4E-10		0.122373	[0.084-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	4E-13		0.147112	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557421	61557422	rs117110139	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117110139-A	NR	3E-10		0.183867	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	6E-37		0.0521415	[0.044-0.06] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-14		0.0331746	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-11		0.0290753	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-19		0.0385727	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-37		0.0547939	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	8E-27		0.0461652	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-46		0.0603354	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	3E-9		0.025204	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-59		0.0678024	[0.06-0.076] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	6E-21		0.0380768	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	7E-30		0.0487869	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	3E-56		0.0660499	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	1E-180		0.115542	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	8E-15		0.0330544	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	4E-26		0.0453463	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	9E-25		0.0437478	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	1E-119		0.0974467	[0.089-0.106] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	9E-28		0.0469277	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	3E-33		0.0517415	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-8		0.0243172	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-38		0.0557406	[0.047-0.064] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-27		0.0468968	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11q12.2		rs102275-T	0.650249	6E-25		0.0420185	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	8E-32		0.0504775	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-11		0.0291397	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-48		0.063162	[0.055-0.072] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-12		0.0305861	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-34		0.0529629	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-59		0.0689191	[0.061-0.077] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	5E-52		0.0648547	[0.056-0.073] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	7E-104		0.0904323	[0.082-0.099] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	1E-14		0.0333895	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	3E-28		0.0477677	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-21		0.0409817	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-27		0.0463494	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	8E-39		0.0559811	[0.048-0.064] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	5E-115		0.0922274	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-20		0.0390381	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-35		0.0532317	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-10		0.0274093	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	3E-36		0.0538695	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	7E-25		0.0443489	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	6E-69		0.0731681	[0.065-0.081] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-128		0.0981736	[0.09-0.106] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	6E-121		0.101052	[0.093-0.11] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-72		0.0754851	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-14		0.0330351	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-25		0.0448483	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	6E-16		0.0349956	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	2E-42		0.0583896	[0.05-0.067] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	3E-78		0.0781308	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	11q12.2		rs102275-T	0.65021	7E-20		0.0393688	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	11q12.2		rs102275-C	0.32122667	1E-12		0.169259	[0.12-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-3 fatty acids	4,348 individuals	NA	11q12.2		rs102275-C	0.322666744	5E-11		0.153785	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	11q12.2		rs102275-C	0.322706302	5E-9		0.135799	[0.09-0.181] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	11q12.2		rs102275-C	0.323946241	1E-11		0.153276	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323946241	1E-11		0.152813	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323547945	5E-9		0.133185	[0.089-0.178] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323946241	8E-10		0.139265	[0.095-0.184] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323547945	1E-8		0.130417	[0.086-0.175] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323946241	1E-12		0.160032	[0.12-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	11q12.2		rs102275-C	0.323547945	4E-9		0.13358	[0.089-0.178] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323946241	6E-10		0.140128	[0.096-0.184] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323547945	4E-9		0.134385	[0.09-0.179] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting estimated degree of unsaturation	4,734 individuals	NA	11q12.2		rs102275-C	0.325323866	9E-70		0.387952	[0.35-0.43] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	11q12.2		rs102275-C	0.323547945	2E-8		0.128906	[0.084-0.173] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-35		0.194727	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-16		0.130458	[0.1-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-26		0.164462	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-61		0.251821	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-26		0.1644	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-33		0.18274	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-63		0.245184	[0.22-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-30		0.173122	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-17		0.128497	[0.099-0.158] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-15		0.121025	[0.091-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-18		0.130105	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-37		0.1489	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	3E-37		0.1181	[0.1-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-38		0.1376	[0.12-0.16] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-37		0.1555	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	5E-37		0.1066	[0.09-0.123] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-10		0.0725843	[0.05-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-16		0.0982379	[0.075-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-16		0.0922037	[0.07-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	1E-38		0.0845	[0.072-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-41		0.173777	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-27		0.129002	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-20		0.119991	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-38		0.07	[0.059-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-37		0.091	[0.077-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	9E-38		0.1337	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	4E-37		0.1367	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-32		0.116116	[0.097-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-20		0.104378	[0.082-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-23		0.108175	[0.087-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-93		0.22155	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-45		0.148488	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-16		0.10882	[0.082-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-12		0.0741184	[0.053-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-10		0.0506802	[0.035-0.067] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-29		0.123606	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-39		0.175835	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-32		0.125598	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	5E-38		0.1093	[0.093-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	4E-38		0.1104	[0.094-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	2E-37		0.1485	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	1E-37		0.1893	[0.16-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-38		0.0933	[0.079-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-37		0.1485	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	3E-37		0.1368	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-19		0.0902125	[0.07-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-27		0.0857433	[0.07-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-24		0.115853	[0.093-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	9E-38		0.1376	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	3E-37		0.1486	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-37		0.1931	[0.16-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-14		0.0727466	[0.054-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-82		0.18788	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-66		0.178192	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-153		0.227128	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-78		0.147188	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-21		0.0720077	[0.057-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-20		0.0893671	[0.07-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-27		0.0954833	[0.078-0.113] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-60		0.176268	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-53		0.117652	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-34		0.113556	[0.095-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-69		0.210613	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-15		0.0572744	[0.043-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-24		0.102711	[0.083-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-75		0.165422	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-24		0.118646	[0.096-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-50		0.170199	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-28		0.0980323	[0.081-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-34		0.146392	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-18		0.100586	[0.078-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-17		0.0893089	[0.068-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-31		0.137051	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	5E-38		0.1383	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	4E-38		0.1407	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-38		0.1081	[0.092-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	3E-38		0.1083	[0.092-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-22		0.096855	[0.077-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-23		0.100694	[0.081-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-49		0.152181	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-35		0.175438	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-28		0.114816	[0.094-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-28		0.17123	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-72		0.276017	[0.25-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-53		0.227699	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-16		0.127934	[0.098-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-121		0.358247	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-58		0.249624	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-24		0.159369	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-33		0.178983	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-129		0.372157	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-23		0.0899645	[0.072-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-17		0.123072	[0.095-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-112		0.333265	[0.3-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-33		0.117859	[0.099-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-24		0.0993129	[0.08-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-76		0.222687	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-96		0.217396	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-42		0.167673	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-24		0.130602	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-46		0.172974	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-66		0.170443	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-80		0.221284	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-11		0.0579174	[0.041-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-36		0.158543	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-26		0.110218	[0.09-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-41		0.161964	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-75		0.231549	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-37		0.125099	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	7E-32		0.180177	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-29		0.122327	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-16		0.125282	[0.095-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-39		0.194468	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-55		0.232494	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-14		0.117692	[0.088-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-49		0.185687	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-14		0.0706593	[0.052-0.089] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-11		0.0844856	[0.06-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-37		0.1027	[0.087-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	4E-38		0.0736	[0.062-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-38		0.1395	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-38		0.0986	[0.084-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	4E-38		0.1491	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	3E-38		0.1398	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	7E-38		0.0946	[0.08-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	3E-38		0.1384	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-38		0.1604	[0.14-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	5E-38		0.1081	[0.092-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	1E-38		0.1604	[0.14-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-38		0.1518	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-38		0.1372	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-38		0.139	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	8E-38		0.1602	[0.14-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-38		0.1408	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	2E-37		0.0998	[0.085-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	4E-38		0.121	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-38		0.1918	[0.16-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-38		0.109	[0.093-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	3E-37		0.1548	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-38		0.1516	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	6E-38		0.1488	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-38		0.1393	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	5E-38		0.1085	[0.092-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	3E-38		0.1525	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	6E-38		0.18	[0.15-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-11		0.0747287	[0.053-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	3E-38		0.161	[0.14-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	2E-37		0.1505	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-38		0.1488	[0.13-0.17] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-286		0.35285	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-70		0.207233	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-44		0.16753	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-18		0.0906203	[0.071-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	6E-18		0.103005	[0.08-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-263		0.410713	[0.39-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-25		0.0923869	[0.075-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-10		0.0738382	[0.051-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-38		0.109	[0.093-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-12		0.0838898	[0.06-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	2E-37		0.1589	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-42		0.166556	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-T	NR	5E-38		0.1148	[0.097-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-37		0.136598	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	2E-38		0.1084	[0.092-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-120		0.186427	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-16		0.0814578	[0.062-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-30		0.119486	[0.099-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-74		0.156738	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-71		0.134679	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	1E-97		0.173086	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-12		0.0776849	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-13		0.0797197	[0.058-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	4E-37		0.0875	[0.074-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	5E-37		0.102	[0.086-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-31		0.142596	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-13		0.0782282	[0.057-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	8E-150		0.307717	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-35		0.129182	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	3E-44		0.148754	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	9E-15		0.0821371	[0.061-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	4E-25		0.099907	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102275-C	NR	2E-11		0.0617644	[0.044-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-38		0.1376	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-A	NR	1E-38		0.1193	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	1E-37		0.0971	[0.082-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102275-G	NR	4E-37		0.1631	[0.14-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557802	61557803	rs102275	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	11q12.2		rs102275-T	0.65	6E-9		0.036	[0.024-0.048] unit increase	Affymetrix [NR]	N
1054	chr11	61557802	61557803	rs102275	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11q12.2		rs102275-?	NR	3E-17		0.0236	unit decrease	NR [NR]	N
1054	chr11	61557802	61557803	rs102275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q12.2	TMEM258	rs102275-C	0.351469	5E-48		0.033643357	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61557802	61557803	rs102275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q12.2	TMEM258	rs102275-C	0.351414	3E-11		0.015564401	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61557802	61557803	rs102275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q12.2	TMEM258	rs102275-C	0.351491	2E-20		0.02147437	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61557802	61557803	rs102275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q12.2	NR	rs102275-C	0.354256	8E-74		0.035386	[0.032-0.039] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1054	chr11	61557802	61557803	rs102275	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11q12.2	NR	rs102275-C	NR	5E-11		1.0309278		NR [NR] (imputed)	N
1054	chr11	61557802	61557803	rs102275	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	TMEM258	rs102275-?	NR	4E-24	(MUFA_FA)	0.09908349	NR unit increase	Illumina [609262]	N
1054	chr11	61557802	61557803	rs102275	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	TMEM258	rs102275-?	NR	2E-17	(MUFA)	0.05436022	NR unit increase	Illumina [609262]	N
1054	chr11	61557802	61557803	rs102275	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	TMEM258	rs102275-?	NR	3E-16	(MUFA_FA)	0.099120535	NR unit increase	Illumina [609262]	N
1054	chr11	61557802	61557803	rs102275	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs102275-C	NR	2E-22	(PC(16:1;0-18:2;0))	0.2964	[0.24-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q12.2		rs102275-?	NR	8E-60				NR [~ 8900000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	8E-17	(Phosphatidylcholine with acyl-alkyl residue sum C38:5/Phosphatidylcholine with acyl-alkyl residue sum C44:4)	0.357382	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	7E-27	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C38:4)	0.462963	[0.38-0.55] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	6E-26	(Phosphatidylcholine with diacyl residue sum C38:4/Sphingomyelin with acyl residue sum C24:0)	0.457665	[0.37-0.54] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	6E-15	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.340896	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	5E-49	(Phosphatidylcholine with diacyl residue sum C36:3/Lysophosphatidylcholine with acyl residue C20:4)	0.597844	[0.52-0.67] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	5E-32	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C36:4)	0.490688	[0.41-0.57] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	5E-20	(Phosphatidylcholine with acyl-alkyl residue sum C36:5/Sphingomyelin with acyl residue sum C24:1)	0.394712	[0.31-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	5E-18	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with diacyl residue sum C36:6)	0.36532	[0.28-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	4E-30	(Phosphatidylcholine with diacyl residue sum C38:4/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.487475	[0.41-0.57] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	4E-26	(Phosphatidylcholine with diacyl residue sum C36:4/Sphingomyelin with acyl residue sum C24:0)	0.460145	[0.38-0.54] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-40	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C36:4)	0.565899	[0.49-0.65] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-38	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.555338	[0.47-0.64] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-35	(Phosphatidylcholine with diacyl residue sum C36:4/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.523961	[0.44-0.6] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-31	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C38:5)	0.490477	[0.41-0.57] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-26	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.454031	[0.37-0.54] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-26	(Phosphatidylcholine with acyl-alkyl residue sum C34:3/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.43919	[0.36-0.52] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-17	(Phosphatidylcholine with acyl-alkyl residue sum C38:4/Phosphatidylcholine with acyl-alkyl residue sum C44:4)	0.365504	[0.28-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-82	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C36:4)	0.786835	[0.71-0.86] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-75	(Lysophosphatidylcholine with acyl residue C20:3/Lysophosphatidylcholine with acyl residue C20:4)	0.753679	[0.68-0.83] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-56	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.639075	[0.56-0.71] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-47	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.586854	[0.51-0.66] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-39	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.557815	[0.48-0.64] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-32	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C38:5)	0.505096	[0.42-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-30	(Phosphatidylcholine with diacyl residue sum C38:5/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.491381	[0.41-0.57] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-30	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C38:4)	0.49379	[0.41-0.58] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-30	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.48109	[0.4-0.56] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-23	(Phosphatidylcholine with acyl-alkyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C40:4)	0.417262	[0.34-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-23	(Phosphatidylcholine with acyl-alkyl residue sum C36:5/Sphingomyelin with acyl residue sum C24:0)	0.434116	[0.35-0.52] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-17	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.366763	[0.28-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-15	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C40:5)	0.348733	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	2E-14	(Phosphatidylcholine with acyl-alkyl residue sum C38:4/Sphingomyelin with acyl residue sum C24:0)	0.339909	[0.25-0.43] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-73	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with diacyl residue sum C38:4)	0.747911	[0.67-0.82] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-56	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.649031	[0.57-0.72] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-42	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with diacyl residue sum C40:5)	0.578435	[0.5-0.66] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-30	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.478987	[0.4-0.56] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-24	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.425111	[0.35-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-21	(Phosphatidylcholine with acyl-alkyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.406293	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-20	(Phosphatidylcholine with diacyl residue sum C38:5/Sphingomyelin with acyl residue sum C24:0)	0.407048	[0.32-0.49] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-20	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.384988	[0.31-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-15	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with diacyl residue sum C34:3)	0.337497	[0.26-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	3E-32	(Lysophosphatidylcholine with acyl residue C20:4)	0.502958	[0.42-0.58] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102275-C	NR	1E-20	(Phosphatidylcholine with diacyl residue sum C38:4)	0.399628	[0.32-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61557802	61557803	rs102275	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	11q12.2	MYRF	rs102275-T	0.35595	1E-8		5.69	z score decrease	NR [~ 10847151] (imputed)	N
1054	chr11	61557802	61557803	rs102275	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Palmitoleic acid (16:1n-7) levels	3,521 Chinese ancestry individuals, European individuals (see Wu 2013).	NA	11q12.2	FADS1, FADS2	rs102275-C	NR	2E-16		0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Oleic acid (18:1n-9) levels	3,521 Chinese ancestry individuals, European ancestry individuals (see Wu et al 2013)	NA	11q12.2	FADS1, FADS2	rs102275-C	NR	1E-39		0.222	[0.19-0.26] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Oleic acid (18:1n-9) levels	3,521 Chinese ancestry individuals, European ancestry individuals (see Wu et al 2013)	NA	11q12.2	FADS1, FADS2	rs102275-C	0.419	3E-10	(Chinese)	0.204	[0.14-0.27] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Oleic acid (18:1n-9) levels	3,521 Chinese ancestry individuals, European ancestry individuals (see Wu et al 2013)	NA	11q12.2	FADS1, FADS2	rs102275-C	0.329	1E-31	(EA)	0.229	[0.19-0.27] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6805	3E-37	(Phosphatidylcholine diacyl C42:4)	0.0628	[0.053-0.072] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6789	1E-55	(Phosphatidylcholine acyl-alkyl C40:4)	0.0681	[0.06-0.077] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6785	3E-44	(Phosphatidylcholine acyl-alkyl C40:5)	0.0605	[0.052-0.069] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6782	2E-38	(Phosphatidylcholine acyl-alkyl C42:5)	0.057	[0.048-0.066] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6762	1E-82	(Phosphatidylcholine acyl-alkyl C38:4)	0.0799	[0.072-0.088] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6742	2E-34	(Phosphatidylcholine acyl-alkyl C44:5)	0.0636	[0.053-0.074] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6734	2E-41	(Phosphatidylcholine acyl-alkyl C44:6)	0.0693	[0.059-0.079] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	TMEM258, FADS1, FADS2, FADS3	rs102275-T	0.6724	2E-42	(Phosphatidylcholine diacyl C40:4)	0.0694	[0.059-0.079] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61557802	61557803	rs102275	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs102275-T	0.6688	2E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, INCENP, FADS1, FADS2, SCGB2A1, SCGB1D1, SCGB2A2, RAB3IL1, AHNAK, C11orf9, DAGLA, FEN1, FADS3, SYT7, BEST1	rs102275-C	0.30	7E-147	(Conditioned on rs174547)	2.49	[2.29-2.69] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	C11orf9	rs102275-?	NR	2E-41	(PC 36:4)	0.45267057	[0.39-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		11q12.2	FADS1, FADS2, FEN1, C11orf10, FADS3	rs102275-C	0.322	1E-20		0.1798	[0.142-0.218] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		11q12.2	C11orf0, C11orf9, FADS1, FADS2, FEN1	rs102275-T	0.329	7E-13		0.024	[0.017-0.03] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		11q12.2	C11orf9, FADS1, FADS2, FEN1, C11orf10, FADS3, RAB3IL1	rs102275-C	0.328	2E-32		0.23	[0.192-0.268] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs102275-?	0.43	4E-264				Illumina [~ 2000000] (imputed)	N
1054	chr11	61557802	61557803	rs102275	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs102275-?	NR	1E-203	(levels)	0.0	[0.80-23.0] % increase	Illumina [NR] (imputed)	N
1054	chr11	61557802	61557803	rs102275	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf10	rs102275-T	NR	8E-153		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61557802	61557803	rs102275	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf10	rs102275-T	NR	7E-64		0.02	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61557802	61557803	rs102275	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	11q12.2	FADS1	rs102275-C	0.341	2E-11		1.08	[1.04-1.12]	Affymetrix, Illumina [953241] (imputed)	N
1054	chr11	61557802	61557803	rs102275	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	C11orf10	rs102275-?	0.20	6E-7	(HDL)			Illumina [308011]	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	4E-24		0.0429954	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	5E-69		0.0736677	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.2		rs102274-T	0.656141	9E-65		0.0677049	[0.06-0.076] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	4E-17		0.0357941	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	5E-70		0.0740634	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	4E-174		0.113451	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	1E-41		0.0574151	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	5E-26		0.0449712	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	7E-69		0.0734117	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs102274-T	0.656132	2E-61		0.0696145	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-37		0.20032	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-18		0.136764	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-27		0.167364	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-62		0.256	[0.23-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-28		0.170036	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-35		0.187749	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-62		0.245354	[0.22-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-30		0.172973	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-16		0.126802	[0.097-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-16		0.123494	[0.093-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-18		0.131982	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	7E-39		0.1369	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	8E-39		0.1505	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-39		0.1379	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	1E-38		0.097	[0.082-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	1E-38		0.1372	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-11		0.0742008	[0.052-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-17		0.10026	[0.077-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-16		0.0937686	[0.071-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	8E-40		0.0786	[0.067-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-42		0.176936	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-28		0.131723	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-19		0.11798	[0.092-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	2E-39		0.1535	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	7E-39		0.1379	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-38		0.1372	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-32		0.117343	[0.098-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-20		0.104704	[0.082-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-23		0.108663	[0.087-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-92		0.221599	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-43		0.146217	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-15		0.104892	[0.078-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-11		0.0718288	[0.051-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-10		0.0526073	[0.037-0.069] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-28		0.123343	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-40		0.177856	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-32		0.127027	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	4E-39		0.1374	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	3E-39		0.1061	[0.09-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	7E-39		0.1922	[0.16-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	6E-39		0.1514	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-39		0.085	[0.072-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	7E-39		0.1026	[0.087-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	9E-39		0.0932	[0.079-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-19		0.0902091	[0.07-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-29		0.0885665	[0.073-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-24		0.117232	[0.095-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	5E-39		0.0841	[0.072-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	6E-39		0.0893	[0.076-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-14		0.0740972	[0.055-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-81		0.187714	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-65		0.177687	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-150		0.225965	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-81		0.150316	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-22		0.0733488	[0.058-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-20		0.0903641	[0.071-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-27		0.094727	[0.077-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-60		0.176665	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-54		0.119038	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-32		0.110781	[0.092-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-68		0.209803	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-14		0.055624	[0.041-0.07] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-24		0.102269	[0.082-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-73		0.164371	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-25		0.120163	[0.097-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-50		0.171244	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-28		0.0988595	[0.081-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-34		0.147975	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-17		0.0995519	[0.077-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-16		0.0890903	[0.068-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-31		0.136076	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	4E-39		0.1043	[0.089-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	2E-39		0.102	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	3E-39		0.1338	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	2E-39		0.1382	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-22		0.0970377	[0.077-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-25		0.103906	[0.084-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-50		0.153292	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	9E-36		0.178123	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-28		0.116236	[0.096-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-30		0.17585	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-69		0.272826	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-52		0.224748	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-10		0.0599931	[0.042-0.078] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-17		0.133289	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-120		0.357466	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-60		0.256043	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-26		0.166621	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-35		0.185487	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-129		0.374829	[0.34-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-23		0.0896883	[0.072-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-18		0.125441	[0.097-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	9E-114		0.336901	[0.31-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-34		0.119101	[0.1-0.138] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-25		0.100847	[0.082-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	9E-78		0.225161	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-95		0.216985	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-40		0.164032	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-24		0.129542	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-47		0.174612	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-66		0.171488	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-79		0.22108	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-10		0.0570748	[0.04-0.074] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-35		0.156385	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-25		0.108304	[0.088-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-40		0.161157	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-74		0.231037	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-37		0.125764	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-30		0.176744	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-32		0.127326	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-16		0.125474	[0.095-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-38		0.193307	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-53		0.228608	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-13		0.112244	[0.082-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-49		0.186335	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-14		0.0720337	[0.054-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-11		0.0863157	[0.061-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	7E-39		0.0934	[0.079-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	3E-39		0.1526	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-39		0.0844	[0.072-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	8E-40		0.1018	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	2E-39		0.1381	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	2E-39		0.1388	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	5E-39		0.1521	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	2E-39		0.1376	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	1E-39		0.1348	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	5E-39		0.1394	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	1E-39		0.0924	[0.079-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	8E-40		0.065	[0.055-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-40		0.1022	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	5E-39		0.0962	[0.082-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-39		0.138	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-39		0.0922	[0.078-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	7E-39		0.1404	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-39		0.0849	[0.072-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	2E-39		0.0847	[0.072-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	8E-40		0.1396	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	8E-39		0.119	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	1E-39		0.0854	[0.073-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	4E-39		0.0887	[0.075-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	4E-39		0.1275	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	2E-39		0.1051	[0.089-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-39		0.0938	[0.08-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	8E-12		0.0773363	[0.055-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	2E-39		0.1045	[0.089-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-39		0.1379	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	2E-39		0.0647	[0.055-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	1E-38		0.1034	[0.088-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-282		0.351561	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	9E-70		0.206669	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-44		0.168238	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-10		0.0602469	[0.041-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-19		0.0923474	[0.072-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-18		0.103373	[0.08-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-259		0.40912	[0.39-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-24		0.0910969	[0.074-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-10		0.0755484	[0.052-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	1E-39		0.1391	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-13		0.0886418	[0.065-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	8E-39		0.1374	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-41		0.165449	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-T	NR	4E-39		0.0695	[0.059-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-37		0.136662	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-39		0.0841	[0.072-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-122		0.188961	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-10		0.0497916	[0.034-0.065] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-15		0.079614	[0.06-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-30		0.120419	[0.1-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-73		0.155748	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-69		0.133969	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-98		0.174561	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	5E-12		0.0767534	[0.055-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	3E-13		0.0799444	[0.058-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-38		0.1094	[0.093-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-38		0.1372	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-33		0.146548	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-13		0.0786462	[0.058-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	2E-149		0.308541	[0.29-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-34		0.126556	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-42		0.146457	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	7E-14		0.0797486	[0.059-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	4E-25		0.100561	[0.082-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs102274-C	NR	1E-11		0.0628477	[0.045-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-A	NR	1E-39		0.1047	[0.089-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	7E-40		0.1409	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-C	NR	6E-39		0.0985	[0.084-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs102274-G	NR	1E-38		0.1034	[0.088-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61557825	61557826	rs102274	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	TMEM258	rs102274-T	0.529979	8E-62	(1-arachidonylglycerol (20:4))	0.408	[0.36-0.46] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61557825	61557826	rs102274	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q12.2	TMEM258	rs102274-T	0.529979	8E-62	(1-arachidonylglycerol (20:4))	0.408	[0.36-0.46] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61557825	61557826	rs102274	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	11q12.2	FADS1, FADS2	rs102274-?	NR	4E-34		2.079	[1.72-2.44] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61557825	61557826	rs102274	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs102274-C	NR	2E-32	(CE(20:5;0))	0.3523	[0.29-0.41] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61557825	61557826	rs102274	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	TMEM258	rs102274-C	NR	8E-21	(Phosphatidylcholine with diacyl residue sum C36:4)	0.407955	[0.32-0.49] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61560034	61560035	rs7102974	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	11q12.2	C11orf10	rs7102974-?	NR	6E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
1054	chr11	61560080	61560081	rs174538	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q12.2	NR	rs174538-A	0.3194	3E-12				NR [9056863] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-28		0.177053	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-13		0.117064	[0.085-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-21		0.149384	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-48		0.22906	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-21		0.14907	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-27		0.169117	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-52		0.229362	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-24		0.159636	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-14		0.118738	[0.088-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-11		0.105208	[0.074-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-14		0.118273	[0.088-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0721	[0.057-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	8E-20		0.1178	[0.093-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.1168	[0.092-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.1178	[0.093-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-14		0.0937506	[0.07-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-14		0.0881361	[0.065-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	5E-20		0.0766	[0.06-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-34		0.162689	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-24		0.12598	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-16		0.110554	[0.084-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0858	[0.067-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.096	[0.075-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.0682	[0.053-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0865	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-30		0.11573	[0.096-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-15		0.0909936	[0.068-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-21		0.10536	[0.084-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-80		0.209073	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-35		0.132656	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-11		0.0897053	[0.063-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-23		0.113081	[0.091-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-33		0.163794	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-25		0.113667	[0.092-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.1164	[0.092-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0762	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0681	[0.054-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.0573	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	7E-20		0.1033	[0.081-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0444	[0.035-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0743	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-15		0.0826374	[0.062-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-27		0.086287	[0.071-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-20		0.107645	[0.085-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.0875	[0.069-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0709	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-11		0.0663754	[0.047-0.086] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-69		0.176247	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-54		0.164047	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-128		0.211747	[0.19-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-76		0.147735	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-19		0.0694179	[0.054-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-20		0.091662	[0.072-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-23		0.0897436	[0.072-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-53		0.16838	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-46		0.112158	[0.097-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-27		0.103259	[0.085-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-57		0.194273	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-11		0.0495599	[0.035-0.064] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-20		0.0957929	[0.076-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-62		0.15374	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-21		0.111301	[0.088-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-42		0.15921	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-24		0.0918376	[0.074-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-29		0.137953	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-15		0.0945452	[0.071-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-12		0.0781372	[0.057-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-25		0.123598	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0681	[0.054-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-20		0.0712	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0707	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0707	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-22		0.0995853	[0.08-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-19		0.0931391	[0.073-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-43		0.145067	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-30		0.166901	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-21		0.102378	[0.081-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-24		0.162118	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-59		0.258087	[0.23-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-46		0.215983	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-14		0.122573	[0.091-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-101		0.335132	[0.3-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	8E-60		0.261267	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-26		0.172066	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-28		0.170663	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-108		0.350412	[0.32-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-22		0.0886411	[0.071-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-14		0.112469	[0.083-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-97		0.317542	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-30		0.113329	[0.094-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-21		0.0938016	[0.074-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-66		0.210424	[0.19-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-86		0.209636	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-33		0.15107	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-20		0.120528	[0.095-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-39		0.162174	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-57		0.161553	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-64		0.201803	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-27		0.139733	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-21		0.100903	[0.08-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-34		0.15059	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-61		0.213225	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-31		0.116778	[0.097-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-28		0.173206	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-27		0.11925	[0.098-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-15		0.12418	[0.093-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-36		0.192556	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-47		0.219979	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-11		0.102992	[0.072-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-42		0.174445	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-13		0.0689266	[0.05-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	7E-20		0.0901	[0.071-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0707	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	5E-20		0.1146	[0.09-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	5E-20		0.1163	[0.091-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0707	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0532	[0.042-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0918	[0.072-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	5E-20		0.0781	[0.061-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0394	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	5E-20		0.0938	[0.074-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-20		0.0395	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	5E-20		0.0766	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0986	[0.077-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0485	[0.038-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	5E-20		0.0391	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-20		0.1172	[0.092-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0892	[0.07-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0765	[0.06-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-20		0.166	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.1155	[0.091-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	5E-20		0.0803	[0.063-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0706	[0.056-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0846	[0.067-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0884	[0.069-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	7E-20		0.0847	[0.066-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-10		0.0731902	[0.051-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.0893	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-20		0.0584	[0.046-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0857	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-240		0.330343	[0.31-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-62		0.197965	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-38		0.157674	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-17		0.089616	[0.069-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-14		0.0940366	[0.07-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-222		0.385775	[0.36-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-21		0.0864868	[0.069-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-10		0.0763558	[0.053-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-G	NR	6E-20		0.0712	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-11		0.082847	[0.059-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	7E-20		0.0989	[0.078-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-37		0.159454	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	6E-20		0.1086	[0.085-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-36		0.13758	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	6E-20		0.0891	[0.07-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-103		0.176105	[0.16-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-11		0.0540479	[0.038-0.07] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-14		0.076599	[0.057-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	9E-25		0.10946	[0.089-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-62		0.146385	[0.13-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-61		0.127922	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-85		0.165037	[0.15-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	2E-10		0.0722203	[0.05-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	8E-11		0.0725559	[0.051-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	7E-27		0.133963	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	4E-11		0.0719243	[0.051-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	5E-122		0.283517	[0.26-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	8E-23		0.104468	[0.084-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	1E-33		0.131863	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	6E-11		0.0710548	[0.05-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174538-A	NR	3E-21		0.0939109	[0.074-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-T	NR	5E-20		0.0961	[0.076-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	5E-20		0.0695	[0.055-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	7E-20		0.0898	[0.071-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174538-C	NR	7E-20		0.0426	[0.033-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61560080	61560081	rs174538	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	TMEM258	rs174538-G	0.545914	2E-16	(1-(1-enyl-palmitoyl)-2-oleoyl-GPC (P-16:0/18:1)*)	0.207	[0.16-0.26] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61560080	61560081	rs174538	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q12.2	ALPK1, NEUROG2, C4orf21, LARP7	rs174538-?		2E-11				NR [7428630] (imputed)	N
1054	chr11	61560080	61560081	rs174538	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q12.2	MYRF, TMEM258, FEN1, FADS2, FADS1	rs174538-?		5E-11				NR [7428630] (imputed)	N
1054	chr11	61560080	61560081	rs174538	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	TMEM258	rs174538-?	NR	6E-10	(HDL2_C)	0.018780654	NR unit decrease	Illumina [609262]	N
1054	chr11	61560080	61560081	rs174538	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174538-A	0.2955	1E-12	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61560080	61560081	rs174538	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174538-A	0.3	9E-14	(docosapentaenoate (n3 DPA; 22:5n3))	0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61560080	61560081	rs174538	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	C11orf10	rs174538-A	NR	5E-58		0.08	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	2E-14		0.108331	[0.081-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	1E-14		0.0792726	[0.059-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	2E-11		0.0760429	[0.054-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	6E-16		0.0831289	[0.063-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	3E-11		0.093712	[0.066-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	7E-17		0.0839014	[0.064-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	1E-12		0.111693	[0.081-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	3E-13		0.146452	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	1E-18		0.175464	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	6E-12		0.138334	[0.099-0.178] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	2E-16		0.159007	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	3E-12		0.088832	[0.064-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	8E-12		0.0938601	[0.067-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	9E-21		0.121329	[0.096-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	6E-19		0.136235	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	2E-12		0.116068	[0.084-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	2E-29		0.14399	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	5E-32		0.183059	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	7E-15		0.0815583	[0.061-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	5E-20		0.0992668	[0.078-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs412334-T	NR	1E-24		0.158498	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	6E-13		0.0236	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	8E-17		0.0273	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	2E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	7E-12		0.0225	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	1E-15		0.0275	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61560260	61560261	rs412334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q12.2	NR	rs412334-T	NR	1E-15		0.0263	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61561287	61561288	rs695867	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs695867-G	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	11q12.2		rs4246215-T	0.390082	2E-11		0.0234029	[0.017-0.03] unit decrease	Illumina [13478866] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-36		0.198287	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-18		0.137298	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-27		0.167452	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-58		0.245844	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-27		0.167744	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-35		0.187631	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-63		0.2443	[0.22-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-29		0.168604	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-15		0.119491	[0.09-0.149] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-15		0.120562	[0.091-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-18		0.130785	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-10		0.072229	[0.05-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-16		0.0958719	[0.073-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-15		0.0894967	[0.067-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-39		0.169843	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-25		0.1246	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-17		0.112147	[0.086-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	9E-30		0.111138	[0.092-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-17		0.0958875	[0.074-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-21		0.100601	[0.08-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-88		0.213557	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-40		0.139014	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-13		0.0968707	[0.071-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-11		0.0704683	[0.05-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-10		0.0516889	[0.036-0.067] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-27		0.11953	[0.098-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-38		0.17294	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-10		0.0944996	[0.065-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-28		0.117395	[0.097-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-17		0.0839884	[0.064-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-27		0.0848745	[0.07-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-20		0.105902	[0.084-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-14		0.073059	[0.054-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-77		0.181441	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-62		0.171178	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-142		0.217163	[0.2-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-74		0.142049	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-20		0.0705272	[0.056-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-18		0.085865	[0.067-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-24		0.0885046	[0.071-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-57		0.170344	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-51		0.114627	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-29		0.104559	[0.086-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-65		0.20213	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-13		0.0534927	[0.039-0.068] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-22		0.0962552	[0.077-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-68		0.157055	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-21		0.108862	[0.086-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-44		0.158697	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-28		0.0967841	[0.079-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-30		0.136524	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-19		0.102294	[0.08-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-17		0.0891466	[0.068-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-31		0.135924	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-23		0.0975756	[0.078-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-22		0.0968548	[0.077-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-48		0.148831	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-35		0.17457	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-26		0.110649	[0.09-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-29		0.172789	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-64		0.260725	[0.23-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-46		0.209192	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-10		0.0595286	[0.041-0.078] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-17		0.13087	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-111		0.340945	[0.31-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-55		0.243461	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-22		0.152617	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-32		0.178031	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-119		0.356762	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-21		0.0845946	[0.067-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-16		0.11868	[0.09-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-104		0.320019	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-34		0.117955	[0.099-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-25		0.100847	[0.082-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-77		0.222222	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-88		0.206357	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-38		0.157198	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-21		0.119233	[0.094-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-46		0.171701	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-67		0.17004	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-76		0.215239	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-34		0.151969	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-22		0.10011	[0.08-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	8E-36		0.149611	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-69		0.220151	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-34		0.117896	[0.099-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-27		0.166575	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-29		0.120109	[0.099-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-15		0.121526	[0.092-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-34		0.180841	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-50		0.219663	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-11		0.103301	[0.074-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-43		0.172097	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-14		0.0715046	[0.053-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-12		0.0889786	[0.064-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-11		0.0732759	[0.051-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-256		0.3316	[0.31-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-59		0.187542	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	7E-12		0.0700836	[0.05-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	9E-48		0.17299	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-16		0.0844082	[0.064-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	9E-17		0.0987372	[0.075-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	5E-236		0.386414	[0.36-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_18:2_[M+OAc]1-/Lysophosphatidylserine_22:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-10		0.066144	[0.046-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-21		0.0848103	[0.067-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-12		0.0850744	[0.062-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-40		0.161443	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-34		0.129258	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-109		0.176255	[0.16-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-15		0.0776001	[0.058-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	6E-30		0.117645	[0.097-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	9E-74		0.155183	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-66		0.129903	[0.12-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-87		0.162329	[0.15-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-10		0.0696984	[0.048-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-11		0.071794	[0.051-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-30		0.138709	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-13		0.0780449	[0.057-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	3E-138		0.293781	[0.27-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-31		0.119924	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	1E-36		0.134174	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	9E-15		0.0817855	[0.061-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	4E-22		0.0931433	[0.074-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs4246215-T	NR	2E-10		0.0582532	[0.04-0.076] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	11q12.2	NR	rs4246215-G	NR	1E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [> 10000000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	11q12.2	FEN1, MYRF, TMEM258, FADS1, FADS2	rs4246215-?		9E-7				Illumina [9560910] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs4246215-T	0.349	5E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FEN1, C11orf9, C11orf10, FADS2, FADS1	rs4246215-?	0.36	1E-9	(ALA)	0.113	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs4246215-?	NR	2E-16	(LPE 18:2)	0.29371384	[0.22-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q12.2	C11orf9, FADS1, FADS2	rs4246215-T	0.338	2E-15		1.079	[1.046-1.112]	Affymetrix, Illumina [1230000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	11q12.2	FEN1	rs4246215-T	NR	3E-10		2.451	[1.69-3.22] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61564298	61564299	rs4246215	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FEN1	rs4246215-T	NR	1E-139		0.07	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61564298	61564299	rs4246215	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	FEN1	rs4246215-T	NR	9E-60		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61564298	61564299	rs4246215	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FEN1	rs4246215-T	NR	6E-55		0.08	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61565907	61565908	rs174541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174541-T	0.642536	6E-19		0.0380416	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1054	chr11	61565907	61565908	rs174541	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	11q12.2	FADS2, FEN1	rs174541-C		2E-23		0.0091	[0.0073-0.0109] unit increase	Affymetrix [13304133] (imputed)	N
1054	chr11	61565907	61565908	rs174541	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	11q12.2	VRK2, FANCL	rs174541-?		4E-9				NR [7428630] (imputed)	N
1054	chr11	61565907	61565908	rs174541	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	11q12.2	MAP2	rs174541-?		1E-8				NR [7428630] (imputed)	N
1054	chr11	61565907	61565908	rs174541	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q12.2	NR	rs174541-C	0.354	9E-10		0.0292	[0.02-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1054	chr11	61565907	61565908	rs174541	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q12.2	NR	rs174541-C	0.3493	2E-11		0.0277	[0.02-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	9E-16	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.348321	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	6E-17	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C42:5)	0.365348	[0.28-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	3E-13	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:4)	0.3193	[0.23-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	3E-12	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C42:4)	0.302653	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	2E-18	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.380947	[0.3-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FEN1, FADS1	rs174541-C	NR	1E-15	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:4)	0.349222	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61565907	61565908	rs174541	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174541-T	0.6495	4E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61565907	61565908	rs174541	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FEN1, C11orf10, FADS1, C11orf9, FADS2	rs174541-?	0.36	3E-19	(DTA)	0.177	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61565907	61565908	rs174541	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174541-?	NR	6E-8	(TAG 60:12)	0.19792306	[0.13-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61565907	61565908	rs174541	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174541-?	NR	3E-12	(PC 36:2)	0.25360888	[0.18-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61565907	61565908	rs174541	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174541-?	NR	2E-7	(PC 38:2)	0.18940052	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61565907	61565908	rs174541	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	11q12.2	FADS1, FADS2, FEN1, FADS3	rs174541-T	0.65	3E-9	(adrenate)	0.28	[0.19-0.37] unit increase	Affymetrix [909508] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	7E-14		0.0324509	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	3E-19		0.0384941	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	9E-13		0.0312658	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	4E-11		0.0289524	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	1E-29		0.0488606	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	5E-24		0.0444146	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174544-C	0.694113	6E-12		0.0299924	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q12.2		rs174544-A	NR	2E-75		0.037	[0.033-0.041] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0845	[0.066-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0425	[0.033-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	9E-20		0.0769	[0.06-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0449	[0.035-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	8E-20		0.0766	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0425	[0.033-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.082	[0.064-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.1134	[0.089-0.138] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.1733	[0.14-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0869	[0.068-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0867	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.0732	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	8E-20		0.0849	[0.067-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0685	[0.054-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.0751	[0.059-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.0704	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0912	[0.071-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	1E-19		0.0799	[0.063-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	9E-20		0.0815	[0.064-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0877	[0.069-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	9E-20		0.0759	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	9E-20		0.0759	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.094	[0.074-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	9E-20		0.0759	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.076	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	8E-20		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0709	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0678	[0.053-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.076	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	9E-20		0.07	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0762	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	8E-20		0.082	[0.064-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	9E-20		0.0763	[0.06-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0914	[0.072-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	1E-19		0.0517	[0.041-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	8E-20		0.078	[0.061-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	8E-20		0.1139	[0.089-0.138] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0972	[0.076-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	9E-20		0.0706	[0.055-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0867	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.0858	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0761	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0639	[0.05-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	1E-19		0.079	[0.062-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.0793	[0.062-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	9E-20		0.111	[0.087-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	1E-19		0.0708	[0.056-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	9E-20		0.0776	[0.061-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.1174	[0.092-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	1E-19		0.052	[0.041-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	8E-20		0.0761	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0812	[0.064-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-T	NR	9E-20		0.0759	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	1E-19		0.0816	[0.064-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.1181	[0.093-0.144] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	1E-19		0.0872	[0.068-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	9E-20		0.0387	[0.03-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-G	NR	8E-20		0.076	[0.06-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-C	NR	8E-20		0.0762	[0.06-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	8E-20		0.0972	[0.076-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174544-A	NR	1E-19		0.07	[0.055-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61567752	61567753	rs174544	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	FADS1	rs174544-?		2E-18		0.0332	[0.026-0.041] unit decrease	Illumina [31500000] (imputed)	N
1054	chr11	61567752	61567753	rs174544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174544-C	0.554478	8E-20	(1-arachidonoyl-GPI (20:4)*)	0.232	[0.18-0.28] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61567752	61567753	rs174544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q12.2	FADS1	rs174544-A	0.30784	4E-27		0.025829602	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61567752	61567753	rs174544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174544-C	0.699702	7E-120				Affymetrix, Illumina [17210439] (imputed)	N
1054	chr11	61567752	61567753	rs174544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q12.2	NR	rs174544-C	0.692567	2E-121		0.048595	[0.045-0.053] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1054	chr11	61567752	61567753	rs174544	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174544-A	NR	2E-16	(PCO(18:0;0-20:4;0))	0.269	[0.21-0.33] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61567752	61567753	rs174544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q12.2		rs174544-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1054	chr11	61567752	61567753	rs174544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11q12.2	FADS1	rs174544-A	0.3081	3E-15		0.03037582	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q12.2		rs174545-G	NR	5E-81		0.0387	[0.035-0.043] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0579	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.1458	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0703	[0.055-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.082	[0.064-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.067	[0.052-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0911	[0.071-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	1E-19		0.0861	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0903	[0.071-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0904	[0.071-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0594	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0705	[0.055-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.1611	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.0577	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.107	[0.084-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	1E-19		0.0838	[0.066-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0829	[0.065-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0832	[0.065-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0865	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0859	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0841	[0.066-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0594	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0744	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0788	[0.062-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.048	[0.038-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.048	[0.038-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0627	[0.049-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0793	[0.062-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.086	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	1E-19		0.0861	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0428	[0.033-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	1E-19		0.0773	[0.061-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0747	[0.058-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0745	[0.058-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.1146	[0.09-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0847	[0.066-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0865	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.1108	[0.087-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0704	[0.055-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	1E-19		0.0482	[0.038-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0623	[0.049-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0578	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0487	[0.038-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	1E-19		0.0744	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	1E-19		0.0915	[0.072-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0422	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0687	[0.054-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	1E-19		0.0487	[0.038-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0979	[0.077-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0399	[0.031-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0481	[0.038-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0793	[0.062-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	1E-19		0.0862	[0.068-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0735	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0756	[0.059-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.0788	[0.062-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.074	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.0604	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.068	[0.053-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.1426	[0.11-0.17] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0531	[0.042-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.058	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	2E-19		0.0655	[0.051-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.1105	[0.086-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.0857	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0724	[0.057-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0861	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0571	[0.045-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.1417	[0.11-0.17] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	1E-19		0.0861	[0.067-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-T	NR	2E-19		0.074	[0.058-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0628	[0.049-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	1E-19		0.091	[0.071-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-A	NR	1E-19		0.0537	[0.042-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-C	NR	2E-19		0.0787	[0.062-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174545-G	NR	2E-19		0.0699	[0.055-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569305	61569306	rs174545	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11q12.2	FADS1/S2	rs174545-?	NR	3E-34		0.01235	[0.01-0.014] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61569305	61569306	rs174545	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11q12.2	FADS1/S2	rs174545-?	NR	3E-33		0.01245	[0.01-0.015] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61569305	61569306	rs174545	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174545-G	NR	7E-21	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.407966	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61569305	61569306	rs174545	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174545-G	0.6561	5E-37		0.2367	[0.20-0.27] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61569305	61569306	rs174545	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174545-C	0.6702	7E-14	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61569305	61569306	rs174545	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FADS1, C11orf10, C11orf9, FADS2, FEN1, FADS3, RAB3IL1	rs174545-?	0.33	8E-90	(AA)	0.374	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61569305	61569306	rs174545	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174545-?	NR	3E-61	(PC 38:4)	0.5422644	[0.48-0.61] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11q12.2		rs174546-T	0.389502	9E-20		0.030963	[0.024-0.038] unit increase	Illumina [13478928] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-36		0.198153	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-17		0.135233	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-27		0.166932	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	8E-61		0.252879	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-27		0.16823	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	9E-35		0.18674	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-63		0.246599	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-30		0.173948	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-16		0.126499	[0.096-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-15		0.122763	[0.093-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-18		0.132042	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.1282	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0666	[0.052-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.038	[0.03-0.046] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0928	[0.072-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0832	[0.065-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-10		0.0736886	[0.051-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-17		0.0996437	[0.076-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-16		0.0934677	[0.071-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	2E-19		0.1158	[0.091-0.141] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-41		0.176342	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-27		0.130734	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-19		0.119898	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0846	[0.066-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.1459	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.1016	[0.079-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.0868	[0.068-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-31		0.115465	[0.096-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	9E-19		0.100628	[0.078-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-22		0.105799	[0.085-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-93		0.22292	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-44		0.147919	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-15		0.105629	[0.079-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-12		0.0729059	[0.052-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-10		0.0513618	[0.035-0.067] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-29		0.125716	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-40		0.178344	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-10		0.0948879	[0.065-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-30		0.122608	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	3E-19		0.0591	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0573	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.0977	[0.076-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0816	[0.064-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	3E-19		0.0962	[0.075-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0671	[0.052-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.1462	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0816	[0.064-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0524	[0.041-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-17		0.0862587	[0.066-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	9E-30		0.0894456	[0.074-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-22		0.111613	[0.089-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.1157	[0.09-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0695	[0.054-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0933	[0.073-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-13		0.0704865	[0.051-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-80		0.187081	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-63		0.174843	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-148		0.224436	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-82		0.150992	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-22		0.0735809	[0.059-0.089] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-20		0.0899816	[0.071-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-27		0.0945461	[0.077-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-61		0.177944	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-54		0.120068	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-32		0.111527	[0.093-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-71		0.213577	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-14		0.055455	[0.041-0.07] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-22		0.0989972	[0.079-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-72		0.163009	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-23		0.114666	[0.092-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-48		0.167158	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-29		0.0999503	[0.082-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-33		0.144319	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.10403	[0.081-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-17		0.0921369	[0.071-0.113] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-32		0.139659	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0417	[0.032-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0686	[0.054-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0734	[0.057-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0935	[0.073-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-22		0.0971759	[0.078-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-24		0.102476	[0.083-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-50		0.154252	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-35		0.177847	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-26		0.1126	[0.092-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-29		0.174014	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-69		0.272744	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-51		0.224185	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-10		0.0587599	[0.04-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-17		0.131852	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-120		0.358514	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-61		0.259393	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-27		0.169438	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-34		0.185174	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-130		0.376112	[0.35-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-23		0.0905546	[0.073-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-17		0.123235	[0.095-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-113		0.336511	[0.31-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-34		0.12007	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-24		0.100071	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-77		0.223853	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-95		0.217406	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-40		0.16424	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-22		0.125925	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-47		0.174799	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-68		0.173549	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-80		0.222379	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-10		0.0569608	[0.04-0.074] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-36		0.158709	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-24		0.107547	[0.087-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-40		0.160491	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-76		0.233054	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-36		0.123488	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-31		0.180151	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-31		0.125586	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-16		0.126881	[0.097-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-39		0.195699	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	8E-54		0.230413	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-13		0.111985	[0.082-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-48		0.184008	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-14		0.0722644	[0.054-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-12		0.0890567	[0.064-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	4E-19		0.0756	[0.059-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0575	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0736	[0.058-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	5E-19		0.0415	[0.032-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	2E-19		0.0633	[0.05-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.0735	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0825	[0.064-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.0778	[0.061-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.0844	[0.066-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0897	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	3E-19		0.0835	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0779	[0.061-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	2E-19		0.0427	[0.033-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.1033	[0.081-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.0394	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	2E-19		0.0881	[0.069-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	2E-19		0.0749	[0.059-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	2E-19		0.0749	[0.059-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0735	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.0854	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	2E-19		0.0477	[0.037-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.079	[0.062-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.1454	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	2E-19		0.0858	[0.067-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.0779	[0.061-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	2E-19		0.078	[0.061-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.0481	[0.038-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.089	[0.07-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.074	[0.058-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.1402	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.0542	[0.042-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0819	[0.064-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.085	[0.066-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-11		0.0766408	[0.054-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0474	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0779	[0.061-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	4E-19		0.0899	[0.07-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	5E-19		0.0524	[0.041-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-19		0.0633	[0.049-0.077] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	5E-19		0.0394	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-284		0.352894	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-69		0.206053	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-44		0.168783	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-10		0.0608044	[0.042-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-18		0.0908632	[0.071-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-18		0.103596	[0.08-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-261		0.41056	[0.39-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	7E-25		0.0923873	[0.075-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-10		0.0752213	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0926	[0.072-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-12		0.0845371	[0.061-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-19		0.1097	[0.086-0.134] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	9E-42		0.166356	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0419	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-38		0.138599	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	3E-19		0.0893	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-121		0.187764	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-10		0.0503661	[0.035-0.066] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	6E-16		0.08033	[0.061-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-30		0.119482	[0.099-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-74		0.157624	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-70		0.134527	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	9E-99		0.174701	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-11		0.0738178	[0.052-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-12		0.0772979	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.0744	[0.058-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-C	NR	5E-19		0.062	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-31		0.143608	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-13		0.0786722	[0.058-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	3E-147		0.306302	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	1E-33		0.126139	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	2E-42		0.146205	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-14		0.0804364	[0.06-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	5E-25		0.100288	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174546-T	NR	4E-11		0.0610936	[0.043-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	3E-19		0.0542	[0.042-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	2E-19		0.0421	[0.033-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-A	NR	4E-19		0.0674	[0.053-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174546-G	NR	4E-19		0.0744	[0.058-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61569829	61569830	rs174546	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	11q12.2	FADS1	rs174546-T	0.354	7E-22		0.046	[0.037-0.056] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	7E-13	(HDL_D)	0.073694155	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	5E-121	(FAw3_FA)	0.2710861	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	3E-69	(UnSat)	0.18897316	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	1E-10	(XL_HDL_C)	0.078737915	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	8E-118	(FAw3_FA)	0.27940938	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	7E-57	(UnSat)	0.19675031	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	1E-9	(HDL_D)	0.07541842	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	1E-7	(XL_HDL_C)	0.07744133	NR unit decrease	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	4E-9	(DHA_FA)	0.0957602	NR unit increase	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	11q12.2	FADS1	rs174546-?	NR	3E-8	(DHA_FA)	0.09535379	NR unit increase	Illumina [609262]	N
1054	chr11	61569829	61569830	rs174546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174546-?	NR	3E-13		0.03536794	[0.026-0.045] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61569829	61569830	rs174546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174546-?	NR	3E-7		2.069741	[1.28-2.86] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61569829	61569830	rs174546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174546-?	NR	6E-13		2.588604	[1.88-3.29] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61569829	61569830	rs174546	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q12.2	NR	rs174546-?	NR	4E-7		0.6579265	[0.4-0.91] unit decrease	Illumina [31978362] (imputed)	N
1054	chr11	61569829	61569830	rs174546	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q12.2		rs174546-T	0.3303	1E-17		0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	11q12.2		rs174546-T	0.3528	5E-15		1.3487	[1.01-1.69] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11q12.2		rs174546-T	0.3557	2E-14		0.0094	[0.007-0.0118] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	11q12.2	FADS1	rs174546-T	0.334	1E-9		1.238	[0.84-1.64] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	NR	6E-52		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.668	4E-41	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.505	9E-7	(Hispanic)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	NR	3E-28		0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.668	2E-25	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	NR	1E-58		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.668	9E-50	(EA)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.505	1E-6	(Hispanic)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	NR	5E-12		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174546-C	0.668	3E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61569829	61569830	rs174546	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	11q12.2	FADS1	rs174546-T	NR	5E-27				NR [25015711] (imputed)	N
1054	chr11	61569829	61569830	rs174546	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	11q12.2	FADS1	rs174546-T	NR	2E-24				NR [2501543] (imputed)	N
1054	chr11	61569829	61569830	rs174546	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	11q12.2	FADS1-2-3	rs174546-T	0.469	7E-6		0.061	[0.034-0.088] unit increase	Illumina [286795]	N
1054	chr11	61569829	61569830	rs174546	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174546-T	0.662	5E-171		0.5227	[0.49-0.56] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61569829	61569830	rs174546	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.3239	6E-20	(Phosphatidylcholine diacyl C40:6)	0.0592	[0.046-0.072] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61569829	61569830	rs174546	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.3216	3E-95	(Phosphatidylcholine diacyl C38:5)	0.1041	[0.094-0.114] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61569829	61569830	rs174546	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174546-T	0.3302	6E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.36	7E-38		0.045	[NR] mg/dL increase	NR [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.36	2E-39		0.051	[NR] unit decrease	NR [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.36	8E-28		0.039	[NR] unit decrease	NR [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.36	3E-37		0.048	[NR] unit decrease	NR [NR] (imputed)	N
1054	chr11	61569829	61569830	rs174546	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	FADS1	rs174546-A	0.18	6E-7	(HDL)	0.03	[0.02-0.04] mmol/l decrease	Illumina [308011]	N
1054	chr11	61569829	61569830	rs174546	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.34	5E-24		3.82	[3.08-4.56] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.35	1E-21		1.71	[1.34-2.08] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174546-T	0.36	2E-22		0.73	[0.57-0.89] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174546-C	0.34	2E-22		1.78	[1.39-2.17] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1054	chr11	61569829	61569830	rs174546	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	11q12.2	FADS1, FADS2	rs174546-A	0.44	1E-7		0.1	[0.06-0.13] mmol/l decrease	Illumina [329091]	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-36		0.199847	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-18		0.136745	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-27		0.167419	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-62		0.255091	[0.23-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-28		0.170245	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-35		0.187764	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-63		0.246249	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-30		0.173471	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-16		0.126788	[0.097-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-16		0.123984	[0.094-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-18		0.132576	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0828	[0.065-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	7E-19		0.0943	[0.074-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0569	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	7E-19		0.0729	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0475	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-11		0.0742421	[0.052-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-17		0.0995184	[0.076-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-16		0.0935344	[0.071-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	5E-19		0.0581	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-42		0.177811	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-27		0.130579	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-20		0.120854	[0.095-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0723	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	6E-19		0.0777	[0.061-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	6E-19		0.0591	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	7E-19		0.0475	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-32		0.116627	[0.097-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-19		0.103064	[0.081-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-23		0.106799	[0.086-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-93		0.22167	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-43		0.145859	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-14		0.102347	[0.076-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-11		0.0706166	[0.05-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-11		0.0531528	[0.037-0.069] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-29		0.124085	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-41		0.179181	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-10		0.0962364	[0.066-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-31		0.12442	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0591	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	7E-19		0.059	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	7E-19		0.059	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	6E-19		0.1138	[0.089-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	5E-19		0.0558	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0617	[0.048-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0728	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-18		0.0876666	[0.068-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-29		0.0888093	[0.073-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-22		0.1126	[0.09-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0807	[0.063-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	7E-19		0.0835	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0571	[0.045-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	9E-14		0.0724792	[0.053-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-81		0.187876	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-64		0.176353	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-149		0.224695	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-81		0.150502	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-22		0.0737927	[0.059-0.089] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-20		0.0901368	[0.071-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-27		0.0949602	[0.078-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-60		0.176969	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-54		0.119734	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-32		0.111395	[0.093-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-70		0.212152	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-14		0.0558594	[0.041-0.07] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-23		0.0997342	[0.08-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-72		0.163241	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-23		0.11569	[0.093-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-48		0.167566	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-29		0.100237	[0.083-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-33		0.145173	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.103424	[0.081-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-17		0.0920794	[0.071-0.113] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-32		0.13944	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0757	[0.059-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0894	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	6E-19		0.0545	[0.043-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0757	[0.059-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-23		0.0986235	[0.079-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-25		0.10368	[0.084-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-51		0.154761	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-35		0.177253	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-27		0.11477	[0.094-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-29		0.174136	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-68		0.270704	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-51		0.222557	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-10		0.0602953	[0.042-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-17		0.132931	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-119		0.356585	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-62		0.261002	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-27		0.170677	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-34		0.183973	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-130		0.375107	[0.34-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-23		0.0895381	[0.072-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-17		0.123196	[0.095-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-114		0.337523	[0.31-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-35		0.120188	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-25		0.101028	[0.082-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-77		0.224166	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-96		0.218099	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-41		0.165175	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-22		0.12485	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-47		0.174537	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-68		0.172967	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-80		0.222752	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-10		0.0560354	[0.039-0.073] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-37		0.159974	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-24		0.107466	[0.087-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-40		0.16121	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-75		0.232521	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-37		0.124769	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-31		0.179445	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-31		0.126688	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-16		0.12617	[0.096-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-38		0.194125	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-53		0.229231	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-13		0.110545	[0.081-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-47		0.183034	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-15		0.0728378	[0.054-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-12		0.0896948	[0.065-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0569	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0619	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0773	[0.06-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	7E-19		0.0591	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.057	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	5E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.057	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0569	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.08	[0.062-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0393	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	6E-19		0.0553	[0.043-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	7E-19		0.0476	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0588	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.062	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0394	[0.031-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0569	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	6E-19		0.0546	[0.043-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0564	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0736	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0871	[0.068-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0773	[0.06-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0798	[0.062-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	5E-19		0.0903	[0.071-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	6E-19		0.0569	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	5E-19		0.0609	[0.048-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0973	[0.076-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-12		0.0773338	[0.055-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-T	NR	5E-19		0.0621	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	6E-19		0.0896	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-19		0.0661	[0.051-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0587	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-19		0.0891	[0.07-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	9E-284		0.352233	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-69		0.206122	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-45		0.169276	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-10		0.0613812	[0.042-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-19		0.0912209	[0.071-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-18		0.103114	[0.08-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-261		0.409961	[0.39-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-25		0.0935383	[0.076-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-10		0.0760494	[0.053-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.057	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-13		0.087531	[0.064-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-A	NR	7E-19		0.0725	[0.056-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-42		0.167565	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0797	[0.062-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-38		0.138675	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0834	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	9E-122		0.188095	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-10		0.0494098	[0.034-0.065] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-15		0.0795943	[0.06-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-30		0.120221	[0.1-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	8E-74		0.156638	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-70		0.134601	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-98		0.174067	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-11		0.0742994	[0.053-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-12		0.0773833	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.0475	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	7E-19		0.103	[0.08-0.126] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	3E-32		0.144834	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-13		0.0791265	[0.058-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-148		0.306887	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	2E-33		0.125581	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	1E-42		0.146434	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-14		0.0804523	[0.06-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	4E-25		0.100303	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-11		0.0607431	[0.043-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-C	NR	5E-19		0.0621	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	5E-19		0.0501	[0.039-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	6E-19		0.0476	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174547-G	NR	7E-19		0.119	[0.093-0.145] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61570782	61570783	rs174547	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	11q12.2	FADS1	rs174547-C	0.328	4E-8		0.036	[0.022-0.05] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1054	chr11	61570782	61570783	rs174547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q12.2	FADS1, FADS2	rs174547-C	0.345471	2E-20		0.021951014	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61570782	61570783	rs174547	32186652	Chen HY	2020-03-18	JAMA Cardiol	Association of FADS1/2 Locus Variants and Polyunsaturated Fatty Acids With Aortic Stenosis.	Aortic valve stenosis	3,469 European ancestry cases, 41,234 European ancestry controls	3,751 European ancestry cases, 236,142 European ancestry controls, 2,175 cases, 25,347 controls	11q12.2	FADS1, FADS2	rs174547-T	NR	3E-8		1.1	[1.06-1.14]	Affymetrix [615643]	N
1054	chr11	61570782	61570783	rs174547	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	11q12.2	intergenic	rs174547-?	NR	5E-7	(spine area MTAG)	0.17	[NR] unit decrease	Affymetrix [NR]	N
1054	chr11	61570782	61570783	rs174547	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	11q12.2	FADS1	rs174547-C	0.298	4E-15		0.042	[0.032-0.052] unit increase	Illumina [621723]	N
1054	chr11	61570782	61570783	rs174547	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	11q12.2	FADS1	rs174547-C	0.298	7E-15		0.372	[0.28-0.46] unit decrease	Illumina [621723]	N
1054	chr11	61570782	61570783	rs174547	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	11q12.2	FADS1	rs174547-C	0.298	6E-12		0.122	[0.089-0.155] unit decrease	Illumina [621723]	N
1054	chr11	61570782	61570783	rs174547	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174547-?	NR	6E-10	(M_VLDL_FC)	0.03388774	NR unit increase	Illumina [609262]	N
1054	chr11	61570782	61570783	rs174547	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174547-?	NR	1E-13	(XS_VLDL_L)	0.050943535	NR unit decrease	Illumina [609262]	N
1054	chr11	61570782	61570783	rs174547	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	11q12.2	FADS1	rs174547-?	NR	9E-8	(LA_FA)	0.086225055	NR unit increase	Illumina [609262]	N
1054	chr11	61570782	61570783	rs174547	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	11q12.2	FADS1	rs174547-?	NR	2E-8	(LA_FA)	0.096224435	NR unit increase	Illumina [609262]	N
1054	chr11	61570782	61570783	rs174547	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	11q12.2		rs174547-C	0.33	2E-6		3.42	[2.03-4.81] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	11q12.2		rs174547-C	0.33	2E-11		2.18	[1.55-2.81] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		11q12.2		rs174547-C	0.33	6E-9		1.72	[1.13-2.31] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	11q12.2		rs174547-C	0.33	9E-15		0.99	[0.74-1.24] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174547-?	NR	3E-13		0.03542681	[0.026-0.045] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174547-?	NR	3E-7		2.076407	[1.28-2.87] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174547-?	NR	5E-13		2.59746	[1.89-3.3] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61570782	61570783	rs174547	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q12.2	NR	rs174547-?	NR	4E-7		0.6572603	[0.4-0.91] unit decrease	Illumina [31978362] (imputed)	N
1054	chr11	61570782	61570783	rs174547	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	11q12.2	FADS1	rs174547-C	0.3261	4E-9		0.90076566	[0.6-1.2] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	11q12.2	FADS1	rs174547-C	0.3261	7E-15		1.8519754	[1.39-2.32] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q12.2	NR	rs174547-?	NR	7E-25				Affymetrix [NR]	N
1054	chr11	61570782	61570783	rs174547	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q12.2	NR	rs174547-?	NR	1E-29				Affymetrix [NR]	N
1054	chr11	61570782	61570783	rs174547	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	11q12.2	FADS2, FADS1	rs174547-C	0.4	7E-23	(other polyunsaturated fatty acids than 18:2)	0.4	[0.38-0.42] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174547-T	0.3382	1E-16		0.048	[0.037-0.059] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6798	5E-12	(Sphingomyeline C16:1)	0.026	[0.019-0.033] unit increase	Affymetrix, Illumina [up to 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6782	6E-11	(Sphingomyeline C18:1)	0.0295	[0.021-0.038] unit increase	Affymetrix, Illumina [up to 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6803	9E-141	(Phosphatidylcholine diacyl C36:4)	0.1157	[0.11-0.12] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6793	9E-172	(Phosphatidylcholine diacyl C38:4)	0.1408	[0.13-0.15] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6792	2E-70	(Phosphatidylcholine acyl-alkyl C38:5)	0.0764	[0.068-0.085] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6783	5E-84	(Phosphatidylcholine acyl-alkyl C36:5)	0.0992	[0.089-0.109] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.678	2E-175	(lysoPhosphatidylcholine acyl C20:4)	0.1652	[0.15-0.18] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6775	3E-42	(Phosphatidylcholine acyl-alkyl C36:4)	0.0663	[0.057-0.076] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-T	0.6756	2E-40	(Phosphatidylcholine diacyl C34:4)	0.0884	[0.075-0.101] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61570782	61570783	rs174547	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174547-T	0.6702	6E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	11q12.2	FADS1	rs174547-T	0.62	6E-18		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1054	chr11	61570782	61570783	rs174547	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, C11orf9, FADS1, DAGLA, FADS2, FEN1, C11orf10, FADS3, RAB3IL1, BEST1	rs174547-T	0.674	2E-72		0.02	[0.018-0.022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, INCENP, FADS1, FADS2, SCGB2A1, SCGB1D1, SCGB2A2, RAB3IL1, AHNAK, C11orf9, DAGLA, FEN1, FADS3, SYT7, BEST1	rs174547-C	0.33	3E-971		1.69	[1.65-1.73] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174547-?	NR	5E-37	(CE 20:4)	0.4354792	[0.37-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174547-?	NR	2E-6	(TAG 52:3)	0.16840667	[0.098-0.238] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11q12.2	C11orf10, C11orf9, FADS1, FADS2, FEN1	rs174547-?	NR	3E-20	(1arachidonoylglycerophosphocholine)	0.05788	[NR] unit decrease	Affymetrix [655658]	N
1054	chr11	61570782	61570783	rs174547	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11q12.2	C11orf10, C11orf9, FADS1, FADS2, FEN1	rs174547-?	NR	2E-14	(1linoleoylglycerophosphoethanolamine)	0.04499	[NR] unit increase	Affymetrix [655658]	N
1054	chr11	61570782	61570783	rs174547	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11q12.2	C11orf10, C11orf9, FADS1, FADS2, FEN1	rs174547-?	NR	1E-10	(eicosapentaenoateEPA205n3)	0.04007	[NR] unit decrease	Affymetrix [655658]	N
1054	chr11	61570782	61570783	rs174547	22960237	Han Y	2012-08-31	Bone	Bivariate genome-wide association study suggests fatty acid desaturase genes and cadherin DCHS2 for variation of both compressive strength index and appendicular lean mass in males.	Comprehensive strength and appendicular lean mass	825 Chinese ancestry female individuals, 802 Chinese ancestry male individuals	1,059 European ancestry male individuals, 2,227 European ancestry female individuals	11q12.2	FADS1, FADS2	rs174547-C	0.33	2E-7	(Males + Females)			Affymetrix [701525]	N
1054	chr11	61570782	61570783	rs174547	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174547-?	NR	8E-262	(LA/PUFA)	0.57	[0.53-0.61] unit increase	Illumina [~ 7700000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	11q12.2	FADS1	rs174547-C	0.32	9E-116	(SM-3 + 152 other traits)	0.178	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1054	chr11	61570782	61570783	rs174547	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS1	rs174547-T	NR	4E-154		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61570782	61570783	rs174547	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS1	rs174547-T	NR	3E-64		0.02	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61570782	61570783	rs174547	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	11q12.2	FADS1	rs174547-C	0.33	2E-9		6.2	[4.22-8.18] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	20037589	Illig T	2009-12-27	Nat Genet	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	11q12.2	FADS1	rs174547-T	NR	7E-179	(PC aa C36:3/PC aa C36:4)	0.151	[NR] unit increase	Affymetrix [517480]	N
1054	chr11	61570782	61570783	rs174547	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-C	0.33	2E-14		0.06	[0.02-0.10] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1054	chr11	61570782	61570783	rs174547	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174547-C	0.33	2E-12		0.09	[0.05-0.13] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-11		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-29		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-39		0.0223	[0.019-0.026] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	11q12.2		rs174548-G	0.297037636113513	2E-7		0.0243881	[0.015-0.034] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	11q12.2		rs174548-G	0.297037636113513	2E-6	(EA)	0.0250773	[0.015-0.035] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-33		0.194095	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-16		0.131154	[0.099-0.163] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-23		0.158935	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-55		0.246942	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-25		0.16399	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-30		0.179471	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-56		0.239414	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-26		0.164667	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-18		0.138706	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-13		0.11348	[0.083-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-15		0.122568	[0.092-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	1E-18		0.0743	[0.058-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0572	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.066	[0.051-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.0712	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-12		0.0823772	[0.06-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-20		0.111028	[0.087-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-19		0.10612	[0.083-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	8E-19		0.0729	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-41		0.180262	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-28		0.136201	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-18		0.119291	[0.093-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-O_42:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-10		0.0917558	[0.063-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	8E-19		0.0719	[0.056-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0717	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.1077	[0.084-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0658	[0.051-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-32		0.119979	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-17		0.097874	[0.075-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-23		0.109147	[0.087-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-92		0.225821	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-40		0.144378	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-15		0.108219	[0.081-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-26		0.120972	[0.099-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-39		0.179773	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-32		0.12913	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0804	[0.063-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0518	[0.04-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	9E-19		0.0784	[0.061-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	1E-18		0.0972	[0.076-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	1E-18		0.058	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.0542	[0.042-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0812	[0.063-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-19		0.0921592	[0.072-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-25		0.0838788	[0.068-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-24		0.119361	[0.096-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.0472	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0611	[0.048-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0587	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-13		0.0718802	[0.052-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-76		0.186445	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-62		0.177243	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-142		0.224931	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-79		0.151752	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-18		0.067233	[0.052-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-16		0.0829059	[0.063-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-23		0.0890961	[0.071-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-55		0.173665	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-46		0.112034	[0.097-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-30		0.10914	[0.09-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-64		0.207137	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-15		0.0586562	[0.044-0.073] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-24		0.104726	[0.084-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-72		0.166373	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-24		0.121846	[0.099-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-48		0.171339	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-23		0.0913547	[0.073-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-34		0.151468	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-16		0.0970144	[0.074-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-13		0.0790035	[0.057-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-26		0.127001	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	9E-19		0.0892	[0.069-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	9E-19		0.0746	[0.058-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.0831	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	9E-19		0.1549	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-21		0.0971762	[0.077-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-26		0.109866	[0.09-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-50		0.156902	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-32		0.173193	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-26		0.113537	[0.092-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-25		0.164606	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-64		0.269365	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-47		0.219446	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-15		0.126104	[0.095-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-114		0.358216	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-67		0.279268	[0.25-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-31		0.187755	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-32		0.182723	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-119		0.368958	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-25		0.0954627	[0.077-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-17		0.12786	[0.099-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-115		0.348086	[0.32-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-29		0.111718	[0.092-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-22		0.0968567	[0.077-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-69		0.217085	[0.19-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-91		0.217482	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-36		0.158076	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-19		0.118345	[0.093-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-42		0.169326	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-58		0.163628	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-68		0.210054	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-10		0.0573648	[0.04-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-32		0.15312	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-24		0.108495	[0.087-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-40		0.163399	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-71		0.23059	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-37		0.127982	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-30		0.180032	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-30		0.127187	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-16		0.130454	[0.1-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-37		0.197827	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-53		0.234585	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-12		0.109553	[0.079-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-47		0.185597	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-13		0.0697963	[0.051-0.089] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	1E-18		0.0587	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.0731	[0.057-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	8E-19		0.0565	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-19		0.0475	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.0831	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	9E-19		0.0717	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.083	[0.065-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.089	[0.069-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.075	[0.058-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-19		0.0719	[0.056-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.1015	[0.079-0.124] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0609	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0677	[0.053-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-19		0.0616	[0.048-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	8E-19		0.0529	[0.041-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-19		0.0833	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0902	[0.07-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0714	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	8E-19		0.1005	[0.078-0.123] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0704	[0.055-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.082	[0.064-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.1012	[0.079-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	8E-19		0.1442	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-19		0.063	[0.049-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.0722	[0.056-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.0694	[0.054-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	9E-19		0.0834	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	9E-19		0.1039	[0.081-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-18		0.1547	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-10		0.0724679	[0.05-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.0746	[0.058-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0714	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.055	[0.043-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	1E-18		0.0733	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-267		0.350063	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-70		0.212198	[0.19-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-38		0.158335	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-10		0.0617624	[0.042-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-19		0.0951242	[0.074-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-16		0.100077	[0.076-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-238		0.401155	[0.38-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-26		0.0968037	[0.079-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-G	NR	9E-19		0.0618	[0.048-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-11		0.0834729	[0.059-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	1E-18		0.0714	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	1E-38		0.163291	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	9E-19		0.1538	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-33		0.132396	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-T	NR	8E-19		0.0573	[0.045-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	8E-109		0.182001	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-13		0.0593977	[0.044-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-13		0.0737883	[0.054-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-28		0.118413	[0.097-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-66		0.152084	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-67		0.134789	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-100		0.179965	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-12		0.0804176	[0.058-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-13		0.0813268	[0.059-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	4E-10		0.0700433	[0.048-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	5E-29		0.140376	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	7E-11		0.0715805	[0.05-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-140		0.306131	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	2E-25		0.111179	[0.09-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-36		0.137912	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	3E-12		0.0760647	[0.055-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174548-G	NR	6E-24		0.100504	[0.081-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	8E-19		0.0736	[0.057-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-C	NR	8E-19		0.092	[0.072-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174548-A	NR	1E-18		0.0654	[0.051-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571347	61571348	rs174548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174548-G	0.327978	4E-32				Affymetrix, Illumina [24649327] (imputed)	N
1054	chr11	61571347	61571348	rs174548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q12.2	NR	rs174548-G	0.313935	6E-36		0.024925	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1054	chr11	61571347	61571348	rs174548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q12.2	NR	rs174548-G	0.313571	4E-27		0.023058	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1054	chr11	61571347	61571348	rs174548	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	11q12.2	FADS1	rs174548-C	0.686235	2E-15		0.96361196	NR	Affymetrix [~ 9600000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS1	rs174548-?	NR	7E-16	(EstC)	0.028999938	NR unit decrease	Illumina [609262]	N
1054	chr11	61571347	61571348	rs174548	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174548-G	NR	1E-8	(CE(16:0;0))	0.1759	[0.12-0.24] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174548-?	NR	1E-10		0.02842459	[0.02-0.037] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61571347	61571348	rs174548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174548-?	NR	2E-6		1.797227	[1.06-2.54] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61571347	61571348	rs174548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174548-?	NR	2E-10		2.147183	[1.48-2.81] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61571347	61571348	rs174548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q12.2	NR	rs174548-?	NR	6E-6		0.5501386	[0.31-0.79] unit decrease	Illumina [31978362] (imputed)	N
1054	chr11	61571347	61571348	rs174548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q12.2		rs174548-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	8E-14	(Phosphatidylcholine with diacyl residue sum C40:4/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.332072	[0.25-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	6E-14	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Sphingomyelin with acyl residue sum C16:0)	0.335386	[0.25-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	5E-12	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C42:2)	0.307499	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	3E-33	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C40:4)	0.523084	[0.44-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	3E-14	(Phosphatidylcholine with diacyl residue sum C36:3/Lysophosphatidylcholine with acyl residue C16:0)	0.32381	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	1E-39	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with diacyl residue sum C40:4)	0.561158	[0.48-0.64] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174548-G	NR	1E-15	(Phosphatidylcholine with diacyl residue sum C40:5/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.354703	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571347	61571348	rs174548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q12.2	FADS1	rs174548-G	0.3139	4E-11		0.02530355	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q12.2	FADS1	rs174548-G	0.3146	5E-23		0.03863999	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174548-G	0.6491	7E-31		0.1789	[0.15-0.21] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61571347	61571348	rs174548	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174548-G	0.6413	2E-38		0.2384	[0.20-0.27] unit decrease	Illumina [up to 1980188] (imputed)	N
1054	chr11	61571347	61571348	rs174548	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174548-C	0.7049	5E-15	(Cis/trans-18:2, EA)	0.0035	[0.0027-0.0043] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	11q12.2	FADS1	rs174548-C	0.7	2E-361	(arachidonate (20:4n6)/dihomo-linolenate (20:3n3 or n6))	0.071	[0.067-0.075] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174548-C	0.7	1E-84	(arachidonate (20:4n6))	0.049	[0.043-0.055] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	8E-21	(CE 20:5)	0.34227917	[0.27-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	8E-17	(TAG 58:10)	0.30133307	[0.23-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	7E-16	(LPE 20:4)	0.29547307	[0.22-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	5E-6	(PC 32:0)	0.16799445	[0.096-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	2E-23	(LPC 20:5)	0.3613383	[0.29-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174548-?	NR	2E-10	(CE 16:0)	0.2326383	[0.16-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571347	61571348	rs174548	23303382	Hong KW	2013-01-10	J Hum Genet	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	11q12.2	FADS1	rs174548-G	0.319	4E-8	(ALB/GLB)	0.017	[0.011-0.023] unit increase	Affymetrix [290659]	N
1054	chr11	61571347	61571348	rs174548	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174548-?	NR	1E-21	(arachidonate204n6)	0.0414	[NR] unit decrease	Affymetrix [655658]	N
1054	chr11	61571347	61571348	rs174548	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q12.2	FADS1	rs174548-G	0.17	5E-14		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1054	chr11	61571347	61571348	rs174548	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q12.2	FADS1	rs174548-G	0.17	1E-12		0.01	[0.007-0.015] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1054	chr11	61571347	61571348	rs174548	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	11q12.2	FADS1	rs174548-?	0.28	5E-8	(PC)			Affymetrix [187454]	N
1054	chr11	61571381	61571382	rs174549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	11q12.2		rs174549-G	0.693029	4E-15		0.0343429	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-32		0.193147	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	9E-16		0.131157	[0.099-0.163] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-23		0.157933	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-54		0.24636	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-24		0.164217	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-30		0.179784	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-55		0.237754	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-25		0.161693	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-18		0.139846	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-13		0.113128	[0.082-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-15		0.123481	[0.093-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0599	[0.047-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0561	[0.044-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0542	[0.042-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0673	[0.052-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-12		0.0814202	[0.058-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-19		0.111226	[0.087-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-19		0.106487	[0.083-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.073	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-40		0.178753	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-29		0.13976	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-17		0.116098	[0.089-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0754	[0.059-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.1389	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.058	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0649	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-32		0.120794	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-16		0.0968895	[0.074-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-22		0.108942	[0.087-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-91		0.226347	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-39		0.142929	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-14		0.106981	[0.08-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-26		0.121821	[0.099-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-38		0.178033	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-30		0.127062	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.071	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.1344	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0474	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0563	[0.044-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0992	[0.077-0.121] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0664	[0.052-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.0607	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0948	[0.074-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-18		0.0906334	[0.07-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-26		0.0865452	[0.071-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-23		0.117531	[0.094-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.1917	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0711	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0954	[0.074-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-13		0.0715116	[0.052-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-74		0.18463	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-60		0.17555	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-138		0.222248	[0.2-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-82		0.155094	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-18		0.0679059	[0.053-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-17		0.0848409	[0.065-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-22		0.0882701	[0.071-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-55		0.173932	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-46		0.113525	[0.098-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-28		0.106158	[0.087-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-63		0.20762	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-14		0.0570808	[0.042-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-23		0.103112	[0.083-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-70		0.164793	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-24		0.11997	[0.097-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-47		0.169874	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-24		0.0933066	[0.075-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-34		0.150422	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-16		0.0971875	[0.074-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-13		0.0793334	[0.058-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-26		0.127526	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0712	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0714	[0.056-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0621	[0.048-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0503	[0.039-0.061] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-21		0.096825	[0.077-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-27		0.112084	[0.092-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-49		0.157049	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-32		0.173974	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-26		0.114225	[0.093-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-25		0.165667	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-64		0.269364	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-46		0.218338	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-10		0.059929	[0.041-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-15		0.127395	[0.096-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-113		0.358407	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-70		0.28519	[0.25-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-33		0.193641	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-33		0.186817	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-119		0.370549	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-25		0.095659	[0.077-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-17		0.1284	[0.099-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-116		0.351329	[0.32-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-28		0.111646	[0.092-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-22		0.097809	[0.078-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-67		0.214859	[0.19-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-90		0.217493	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-34		0.15446	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-19		0.117635	[0.092-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-42		0.17019	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-59		0.165576	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-69		0.211196	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-31		0.151439	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-23		0.107462	[0.086-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-39		0.162091	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-71		0.232165	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-36		0.126221	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-29		0.178579	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-30		0.127413	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-16		0.130032	[0.099-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-37		0.198665	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-51		0.232584	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-11		0.10652	[0.076-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-45		0.183319	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-13		0.0705124	[0.052-0.089] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0835	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.1209	[0.094-0.148] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0581	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-18		0.1126	[0.088-0.138] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0524	[0.041-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	1E-18		0.0653	[0.051-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0991	[0.077-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.073	[0.057-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0474	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	1E-18		0.0524	[0.041-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0603	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0753	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0789	[0.061-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0715	[0.056-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0473	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0784	[0.061-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0912	[0.071-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-18		0.0791	[0.061-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-18		0.0586	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0685	[0.053-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	1E-18		0.0784	[0.061-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0662	[0.051-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0586	[0.046-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.0948	[0.074-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-18		0.0677	[0.053-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0791	[0.061-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.0494	[0.038-0.06] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0609	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0582	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.058	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-10		0.072846	[0.05-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-18		0.0799	[0.062-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	2E-18		0.0474	[0.037-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0712	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.077	[0.06-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-263		0.348978	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	5E-69		0.211276	[0.19-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-37		0.157749	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-10		0.062081	[0.043-0.082] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-20		0.0964627	[0.076-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-16		0.100177	[0.076-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-234		0.399238	[0.38-0.42] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-25		0.0964548	[0.078-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0779	[0.061-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-12		0.0854618	[0.061-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.1729	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-38		0.163358	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0517	[0.04-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-34		0.133794	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-T	NR	1E-18		0.0585	[0.046-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-110		0.184128	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-13		0.0602123	[0.044-0.076] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-13		0.0742556	[0.054-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-27		0.117032	[0.096-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	4E-65		0.150988	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-66		0.134013	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	7E-102		0.182403	[0.17-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	6E-12		0.0786935	[0.056-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	9E-13		0.080537	[0.058-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-29		0.141553	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	9E-11		0.0713758	[0.05-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	8E-139		0.305338	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	9E-23		0.105289	[0.084-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	2E-35		0.13692	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	1E-11		0.0740747	[0.053-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174549-A	NR	3E-24		0.101871	[0.082-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	1E-18		0.0517	[0.04-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	1E-18		0.0995	[0.077-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-G	NR	2E-18		0.0531	[0.041-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174549-C	NR	2E-18		0.0848	[0.066-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571381	61571382	rs174549	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q12.2		rs174549-G	0.691	3E-31				Affymetrix [10369434] (imputed)	N
1054	chr11	61571381	61571382	rs174549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q12.2	FADS1	rs174549-A	0.308875	2E-28		0.026467184	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61571381	61571382	rs174549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q12.2	FADS1	rs174549-A	0.309807	1E-25		0.0331144	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61571381	61571382	rs174549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174549-A	0.318255	2E-21				Affymetrix, Illumina [21126107] (imputed)	N
1054	chr11	61571381	61571382	rs174549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q12.2	NR	rs174549-A	0.308031	5E-21		0.020416	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1054	chr11	61571381	61571382	rs174549	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174549-A	NR	2E-8	(SM(36:2;2))	0.1737	[0.11-0.23] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174549-A	NR	6E-9	(PEO(16:1;0-20:4;0))	0.1959	[0.13-0.26] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q12.2		rs174549-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	11q12.2	FADS1	rs174549-A	0.33	2E-70	(D5D)			Illumina [at least 738879] (imputed)	N
1054	chr11	61571381	61571382	rs174549	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (adipose tissue)	783 European ancestry individuals	NA	11q12.2	FADS1	rs174549-A	0.33	1E-27	(D5D)			Illumina [1621833] (imputed)	N
1054	chr11	61571381	61571382	rs174549	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q12.2	FADS1	rs174549-A	0.2769	4E-20		0.0295	[0.023-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174549-A	NR	4E-12	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with diacyl residue sum C42:4)	0.30512	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571381	61571382	rs174549	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174549-A	NR	2E-18	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C42:4)	0.385272	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571381	61571382	rs174549	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174549-A	NR	1E-20	(Phosphatidylcholine with acyl-alkyl residue sum C42:5/Phosphatidylcholine with acyl-alkyl residue sum C44:4)	0.416489	[0.33-0.5] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61571381	61571382	rs174549	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q12.2	FADS1	rs174549-A	0.309	6E-11		0.02525497	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q12.2	FADS1	rs174549-A	0.3091	2E-12		0.02702851	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174549-A	0.2918	5E-15	(Cis/trans-18:2, EA)	0.0035	[0.0027-0.0043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FADS1, C11orf9, C11orf10, FEN1, FADS2	rs174549-?	0.29	2E-10	(GLA)	0.124	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FADS1	rs174549-?	0.29	4E-10	(DPA-n3)	0.122	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571381	61571382	rs174549	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	11q12.2	FADS1, FADS2, FADS3, FEN1	rs174549-?	0.59	1E-20		1.37	[1.28-1.47]	Affymetrix [662108]	N
1054	chr11	61571381	61571382	rs174549	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	11q12.2	FADS1	rs174549-A	0.31	1E-22		0.358	[0.27-0.45] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1054	chr11	61571381	61571382	rs174549	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	11q12.2	FADS1	rs174549-G	NR	2E-30	(Glycerolphosphocholine)			Affymetrix [333722]	N
1054	chr11	61571381	61571382	rs174549	22960237	Han Y	2012-08-31	Bone	Bivariate genome-wide association study suggests fatty acid desaturase genes and cadherin DCHS2 for variation of both compressive strength index and appendicular lean mass in males.	Comprehensive strength and appendicular lean mass	825 Chinese ancestry female individuals, 802 Chinese ancestry male individuals	1,059 European ancestry male individuals, 2,227 European ancestry female individuals	11q12.2	FADS1, FADS2	rs174549-A	0.30	8E-7	(Males)			Affymetrix [701525]	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-36		0.199647	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-18		0.13618	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-27		0.167107	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-62		0.254911	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-28		0.169335	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-35		0.186901	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-63		0.245611	[0.22-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-30		0.172951	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-16		0.126985	[0.097-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-16		0.123277	[0.093-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.131959	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0469	[0.036-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0686	[0.053-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0676	[0.052-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0754	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	4E-18		0.1336	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-11		0.0738748	[0.052-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-17		0.0997735	[0.076-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-16		0.0940627	[0.072-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.0773	[0.06-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-42		0.177009	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-27		0.13054	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-20		0.120177	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.0994	[0.077-0.122] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0645	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0723	[0.056-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0768	[0.06-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-32		0.116884	[0.098-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-19		0.102773	[0.081-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-23		0.107722	[0.086-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-92		0.221295	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-43		0.145896	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-14		0.103345	[0.077-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-11		0.0711447	[0.05-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-10		0.051809	[0.036-0.068] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-29		0.123636	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-40		0.178572	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-10		0.0960909	[0.066-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-31		0.124825	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.1881	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0542	[0.042-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0648	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.1022	[0.079-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0584	[0.045-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0833	[0.064-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0755	[0.059-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.074	[0.057-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.0754	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.088145	[0.068-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-29		0.0882759	[0.073-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-23		0.113961	[0.091-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0571	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0576	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0577	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-14		0.0725312	[0.054-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-81		0.187965	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-64		0.176412	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-150		0.225646	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-81		0.150351	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-22		0.0733508	[0.058-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-20		0.0904053	[0.071-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-27		0.095222	[0.078-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-60		0.176829	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-54		0.119382	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-32		0.111505	[0.093-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-70		0.211754	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-14		0.0560859	[0.042-0.071] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-23		0.100432	[0.081-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-73		0.163777	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-24		0.117	[0.094-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-49		0.168909	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-29		0.0994595	[0.082-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-34		0.146389	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-18		0.102157	[0.079-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-17		0.0909837	[0.07-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-32		0.13843	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.0754	[0.059-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-18		0.097	[0.075-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.083	[0.064-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.0834	[0.065-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-23		0.0981199	[0.079-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-25		0.103371	[0.084-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-51		0.154695	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-36		0.1784	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-27		0.114713	[0.094-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-29		0.174777	[0.14-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-69		0.272792	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-52		0.224493	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_39:6_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-10		0.05925	[0.041-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-17		0.133132	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-120		0.357977	[0.33-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-62		0.25953	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-27		0.16995	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-34		0.184939	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-130		0.375085	[0.34-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-24		0.0905667	[0.073-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-17		0.123998	[0.096-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-113		0.336234	[0.31-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-34		0.119426	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-25		0.100495	[0.081-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-77		0.224138	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-96		0.218205	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-41		0.165582	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-23		0.127233	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-47		0.174114	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-67		0.172273	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-80		0.221825	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-10		0.0568747	[0.04-0.074] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-36		0.158545	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-25		0.108368	[0.088-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-41		0.161301	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-75		0.231995	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-37		0.125304	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-31		0.180185	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-31		0.125966	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-16		0.127079	[0.097-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-38		0.194936	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-54		0.230155	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-13		0.111674	[0.082-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-48		0.184539	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-14		0.0724097	[0.054-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-12		0.0887102	[0.064-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0757	[0.059-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0648	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.047	[0.036-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-18		0.0571	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0763	[0.059-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.075	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.0683	[0.053-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.058	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0805	[0.062-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0447	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0448	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.1026	[0.08-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.0573	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.1055	[0.082-0.129] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0987	[0.077-0.121] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0573	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-18		0.0606	[0.047-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-18		0.06	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0634	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0617	[0.048-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0849	[0.066-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0568	[0.044-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0574	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.1274	[0.099-0.156] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0535	[0.042-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.0501	[0.039-0.061] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0472	[0.037-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0766	[0.059-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0806	[0.063-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	3E-18		0.0873	[0.068-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0578	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.1026	[0.08-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0709	[0.055-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-12		0.0775255	[0.055-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0574	[0.044-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0535	[0.042-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0788	[0.061-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	4E-18		0.0914	[0.071-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0412	[0.032-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	4E-18		0.0569	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-284		0.352462	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-70		0.206565	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-45		0.169062	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-10		0.0604328	[0.042-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-18		0.0907969	[0.071-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-18		0.103253	[0.08-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-262		0.410482	[0.39-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-25		0.092894	[0.075-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-10		0.0744595	[0.051-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.0737	[0.057-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	6E-13		0.0869354	[0.063-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	3E-18		0.0462	[0.036-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-42		0.166979	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-18		0.0539	[0.042-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-38		0.138631	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-A	NR	2E-18		0.0608	[0.047-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-121		0.187364	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-10		0.0504941	[0.035-0.066] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	8E-16		0.0797411	[0.06-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-31		0.120265	[0.1-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	5E-74		0.156695	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-70		0.134623	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	7E-99		0.174461	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-11		0.0753712	[0.054-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	9E-13		0.0782265	[0.057-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	4E-18		0.0569	[0.044-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-18		0.0464	[0.036-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-32		0.144465	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-13		0.079417	[0.058-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	2E-148		0.306955	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-33		0.125785	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	1E-42		0.146372	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	3E-14		0.0807404	[0.06-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-25		0.100245	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174550-C	NR	4E-11		0.0610118	[0.043-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	2E-18		0.1067	[0.083-0.131] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-T	NR	2E-18		0.0588	[0.046-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.0812	[0.063-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174550-G	NR	3E-18		0.189	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61571477	61571478	rs174550	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	11q12.2	FADS1	rs174550-T	0.646586	3E-9		0.018055	[0.012-0.024] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	11q12.2	FADS1	rs174550-T	0.646586	1E-8		0.018567	[0.012-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	11q12.2	FADS1	rs174550-T	0.646586	9E-18		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q12.2	NR	rs174550-?	NR	5E-6		0.04675648	[0.027-0.067] unit decrease	Illumina [29713514] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	NR	3E-52		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.668	3E-41	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.505	1E-6	(Hispanic)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.379	7E-6	(East Asian)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	NR	1E-27		0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.668	6E-25	(EA)	0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	NR	1E-57		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.668	7E-49	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.505	2E-6	(Hispanic)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	NR	5E-12		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174550-T	0.668	4E-11	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61571477	61571478	rs174550	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174550-T	0.643	3E-41	(Trans-ethnic initial)	0.0469	[0.04-0.054] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174550-T	0.642	6E-30	(Trans-ethnic initial)	0.039	[0.032-0.046] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174550-T	0.6772	4E-33	(Phosphatidylcholine acyl-alkyl C36:2)	0.058	[0.049-0.067] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61571477	61571478	rs174550	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174550-T	0.6687	6E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	11q12.2	FADS1	rs174550-C	0.296351500690675	2E-9		0.020597532	[0.014-0.027] unit decrease	Illumina [197481]	N
1054	chr11	61571477	61571478	rs174550	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	FADS1, FADS2, C11orf10, C11orf9, FEN1, RAB3IL1	rs174550-?	0.33	6E-43	(LA)	0.258	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, INCENP, FADS1, FADS2, SCGB1D1, SCGB2A1, C11orf9, DAGLA, FEN1, RAB3IL, C11orf10, FADS3, SYT7, BEST1, SCGB1D2	rs174550-T	0.676	4E-274		1.47	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (adrenic acid)	8,631 European ancestry individuals	NA	11q12.2	C11orf9, FADS1, FADS2, DAGLA, FEN1, C11orf10, FADS3, RAB3IL1, BEST1	rs174550-T	0.674	4E-140		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174550-T	0.67	7E-24	(adrenate (22:4n6))	0.035	[0.029-0.041] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174550-?	NR	5E-8	(TAG 54:4)	0.19186842	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174550-?	NR	1E-40	(LPC 20:4)	0.4544077	[0.39-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FEN1	rs174550-?	NR	1E-13	(LPC 22:6)	0.26258403	[0.19-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q12.2	FADS1	rs174550-T	0.6571	2E-9		0.001	[-0.00036-0.00236] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q12.2	FADS1	rs174550-T	0.649	2E-10		0.0203	[0.014-0.027] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS1	rs174550-T	NR	1E-57		0.08	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61571477	61571478	rs174550	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	11q12.2	FADS1	rs174550-T	0.64	5E-13		0.02	[0.014-0.026] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61571477	61571478	rs174550	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	11q12.2	FADS1	rs174550-T	0.64	2E-15		0.017	[0.011-0.023] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0484	[0.034-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0402	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-C	NR	1E-11		0.056	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0554	[0.039-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.1234	[0.088-0.159] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0305	[0.022-0.039] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0637	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0458	[0.032-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0925	[0.066-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0555	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0604	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.1984	[0.14-0.26] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.1293	[0.092-0.167] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.056	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-C	NR	1E-11		0.0533	[0.038-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0813	[0.058-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0483	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.1233	[0.088-0.159] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0401	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0401	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-C	NR	1E-11		0.0533	[0.038-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0829	[0.059-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.033	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0544	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-A	NR	1E-11		0.0416	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-C	NR	1E-11		0.0815	[0.058-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.1561	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0401	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0473	[0.034-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-C	NR	1E-11		0.0831	[0.059-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.093	[0.066-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.2199	[0.16-0.28] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-G	NR	1E-11		0.0654	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573539	61573540	rs4564341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs4564341-T	NR	1E-11		0.04	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.0539	[0.042-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.0577	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.045	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	6E-18		0.0729	[0.056-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	4E-18		0.0963	[0.075-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0588	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.0657	[0.051-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	5E-18		0.0654	[0.051-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	4E-18		0.0833	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.2029	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0754	[0.058-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.1041	[0.081-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.188	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0753	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.1041	[0.081-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	6E-18		0.072	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.2018	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.0753	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0825	[0.064-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0721	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0784	[0.061-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0721	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.0449	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.2023	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0819	[0.063-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0569	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0702	[0.054-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0666	[0.052-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	5E-18		0.2054	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	4E-18		0.0825	[0.064-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.051	[0.039-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0461	[0.036-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.1886	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.0566	[0.044-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.0991	[0.077-0.122] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	4E-18		0.0783	[0.061-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0697	[0.054-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0576	[0.045-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	5E-18		0.1097	[0.085-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.1084	[0.084-0.133] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	4E-18		0.2018	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	5E-18		0.0451	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	4E-18		0.0721	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0721	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0777	[0.06-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.0709	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.2019	[0.16-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.189	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	4E-18		0.096	[0.074-0.118] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	4E-18		0.0825	[0.064-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.0921	[0.071-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	4E-18		0.0688	[0.053-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.1052	[0.081-0.129] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0721	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-C	NR	4E-18		0.0553	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-A	NR	5E-18		0.0831	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	5E-18		0.0605	[0.047-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0891	[0.069-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	6E-18		0.0664	[0.051-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0715	[0.055-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	4E-18		0.0604	[0.047-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-T	NR	5E-18		0.054	[0.042-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174551-G	NR	5E-18		0.0471	[0.036-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61573683	61573684	rs174551	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q12.2	FADS1	rs174551-T	0.66	6E-18				NR [> 9500000] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q12.2	FADS1	rs174551-?	NR	3E-25		0.02368	[0.019-0.028] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	11q12.2	FADS1, FADS2	rs174551-T	0.562	1E-19		0.32	[0.25-0.39] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174551-?	NR	3E-13		0.03540838	[0.026-0.045] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174551-?	NR	3E-7		2.076762	[1.28-2.87] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174551-?	NR	5E-13		2.597801	[1.89-3.3] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61573683	61573684	rs174551	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q12.2	NR	rs174551-?	NR	4E-7		0.656971	[0.4-0.91] unit decrease	Illumina [31978362] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	NR	5E-48		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.684	6E-37	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.572	5E-7	(Hispanic)	0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.454	7E-6	(East Asian)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	NR	1E-26		0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.684	2E-24	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	NR	2E-55		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.684	1E-47	(EA)	0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.454	2E-6	(East Asian)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	NR	2E-10		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174551-T	0.684	3E-9	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q12.2	FADS1	rs174551-?	NR	8E-15		0.03515	[0.026-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1054	chr11	61573683	61573684	rs174551	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	11q12.2	FADS1	rs174551-?	NR	6E-9		0.02324	[0.015-0.031] unit decrease	Illumina [6108953] (imputed)	N
1054	chr11	61573683	61573684	rs174551	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174551-T	0.63	2E-27		0.067	[0.055-0.079] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	5E-35		0.0514948	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	7E-20		0.038254	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	4E-57		0.0664937	[0.058-0.075] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	1E-46		0.062235	[0.054-0.071] unit increase	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	2E-31		0.0488164	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	4E-25		0.0434367	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	8E-22		0.0402225	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	1E-59		0.0680185	[0.06-0.076] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	6E-37		0.0528599	[0.045-0.061] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	1E-23		0.0419255	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	1E-56		0.066126	[0.058-0.074] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	8E-40		0.0572682	[0.049-0.066] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	7E-69		0.0734483	[0.065-0.082] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	7E-66		0.0716351	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174553-A	0.657442	7E-72		0.0725654	[0.065-0.08] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q12.2		rs174553-G	NR	2E-43		0.0306	[0.026-0.035] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.1998	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.0746	[0.058-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	7E-18		0.0907	[0.07-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.0756	[0.058-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	9E-18		0.0896	[0.069-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0523	[0.04-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.055	[0.042-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	7E-18		0.048	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	7E-18		0.0441	[0.034-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	8E-18		0.0799	[0.062-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.0464	[0.036-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.0859	[0.066-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.0819	[0.063-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	8E-18		0.0735	[0.057-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	8E-18		0.0901	[0.07-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0575	[0.044-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	8E-18		0.0717	[0.055-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	8E-18		0.11	[0.085-0.135] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	7E-18		0.1104	[0.085-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.046	[0.035-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	7E-18		0.0602	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.0727	[0.056-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.188	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.0603	[0.047-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	6E-18		0.0725	[0.056-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.08	[0.062-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.0748	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0756	[0.058-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	9E-18		0.0799	[0.062-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0548	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0719	[0.056-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0585	[0.045-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	8E-18		0.0898	[0.069-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.0602	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0567	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.1192	[0.092-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.1898	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	8E-18		0.0653	[0.05-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	6E-18		0.108	[0.083-0.133] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	6E-18		0.0538	[0.042-0.066] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0581	[0.045-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	7E-18		0.0772	[0.06-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.1033	[0.08-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	6E-18		0.0709	[0.055-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.0675	[0.052-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0663	[0.051-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0507	[0.039-0.062] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0595	[0.046-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	8E-18		0.0409	[0.031-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	6E-18		0.0522	[0.04-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.0602	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.073	[0.056-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	7E-18		0.0511	[0.04-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	6E-18		0.0763	[0.059-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.0602	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	6E-18		0.0448	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	8E-18		0.1186	[0.092-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	9E-18		0.2295	[0.18-0.28] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0789	[0.061-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	9E-18		0.0943	[0.073-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0725	[0.056-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	8E-18		0.0572	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	7E-18		0.088	[0.068-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	6E-18		0.0653	[0.05-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	8E-18		0.0718	[0.055-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-G	NR	9E-18		0.1991	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	6E-18		0.0382	[0.03-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-T	NR	6E-18		0.0456	[0.035-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-A	NR	7E-18		0.0565	[0.044-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61575157	61575158	rs174553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174553-C	NR	8E-18		0.0819	[0.063-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61575209	61575210	rs183843574	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-452 sp000434035 abundance in stool	5,959 Finnish ancestry individuals	NA	11q12.2		rs183843574-G	0.0123529	5E-8		0.439124	[0.28-0.6] unit increase	Illumina [7980478] (imputed)	N
1054	chr11	61575806	61575807	rs751229834	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11q12.2	FADS1	rs751229834-C	0.30715143151157	5E-11		0.04680976	[0.033-0.061] unit decrease	Affymetrix [35186738] (imputed)	N
1054	chr11	61575806	61575807	rs751229834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q12.2	NR	rs751229834-D	0.305854	7E-32		0.026452	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1054	chr11	61575807	61575808	rs199977718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q12.2		rs199977718-C	NR	2E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1054	chr11	61579380	61579381	rs116878346	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs116878346-A	NR	3E-28		0.1209	[0.099-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579380	61579381	rs116878346	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs116878346-A	NR	3E-28		0.0675	[0.056-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579426	61579427	rs72643557	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs72643557-T	0.3432	2E-10	(Cer d18:1/24:1)	0.1003	[0.069-0.131] unit decrease	Illumina [~ 47000000] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.2		rs174554-A	0.658298	4E-102		0.0874791	[0.079-0.095] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174554-A	0.658288	7E-43		0.0569099	[0.049-0.065] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174554-A	0.658288	1E-25		0.0438519	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs174554-A	0.658288	1E-67		0.0718788	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs174554-A	0.658288	2E-91		0.0835689	[0.075-0.092] unit increase	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q12.2		rs174554-A	0.65796	3E-48		0.0606219	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174554-A	0.658288	7E-64		0.0688116	[0.061-0.077] unit increase	NR [11722792] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0596	[0.046-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0646	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0456	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0742	[0.057-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	2E-17		0.0841	[0.065-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	9E-18		0.0921	[0.071-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0459	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0827	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0832	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	2E-17		0.0637	[0.049-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0912	[0.07-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.048	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.1068	[0.082-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0692	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0459	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0594	[0.046-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0455	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.186	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0801	[0.062-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0598	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0506	[0.039-0.062] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0927	[0.072-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0802	[0.062-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0867	[0.067-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.045	[0.035-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0828	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.1302	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0828	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	2E-17		0.1234	[0.095-0.152] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	9E-18		0.083	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0783	[0.06-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0491	[0.038-0.06] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0711	[0.055-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.1846	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0642	[0.049-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	9E-18		0.047	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0655	[0.05-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0729	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	9E-18		0.0742	[0.057-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	9E-18		0.1099	[0.085-0.135] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	9E-18		0.1192	[0.092-0.146] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0874	[0.067-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0456	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	9E-18		0.0698	[0.054-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0916	[0.071-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0633	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0797	[0.061-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	9E-18		0.0462	[0.036-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0864	[0.067-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0831	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.1067	[0.082-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0651	[0.05-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0489	[0.038-0.06] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.078	[0.06-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0628	[0.048-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0569	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	1E-17		0.0654	[0.05-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	2E-17		0.0808	[0.062-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.1035	[0.08-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	2E-17		0.0768	[0.059-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0828	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0787	[0.061-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	1E-17		0.0892	[0.069-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0828	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-T	NR	2E-17		0.0891	[0.069-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	2E-17		0.0522	[0.04-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0647	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-A	NR	9E-18		0.1187	[0.092-0.146] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-G	NR	1E-17		0.0557	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174554-C	NR	1E-17		0.0802	[0.062-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579462	61579463	rs174554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174554-A	0.531915	5E-21	(1-palmitoyl-2-stearoyl-GPC (16:0/18:0))	0.235	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61579462	61579463	rs174554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174554-A	0.531915	4E-44	(eicosapentaenoate (EPA; 20:5n3))	0.331	[0.28-0.38] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61579462	61579463	rs174554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174554-A	0.531915	2E-39	(1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6)*)	0.331	[0.28-0.38] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61579462	61579463	rs174554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q12.2	FADS1	rs174554-A	0.531915	5E-21	(1-palmitoyl-2-stearoyl-GPC (16:0/18:0))	0.235	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61579462	61579463	rs174554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174554-?	NR	3E-13		0.03535392	[0.026-0.045] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61579462	61579463	rs174554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q12.2	NR	rs174554-?	NR	3E-7		2.068699	[1.28-2.86] unit decrease	Illumina [32003504] (imputed)	N
1054	chr11	61579462	61579463	rs174554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174554-?	NR	7E-13		2.585873	[1.88-3.29] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61579462	61579463	rs174554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q12.2	NR	rs174554-?	NR	5E-7		0.6555038	[0.4-0.91] unit decrease	Illumina [31978362] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174554-G	NR	3E-17	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.370484	[0.29-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	NR	4E-52		0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.668	4E-41	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.506	9E-7	(Hispanic)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.379	7E-6	(East Asian)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	NR	9E-28		0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.668	6E-25	(EA)	0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	NR	5E-58		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.668	6E-49	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.506	1E-6	(Hispanic)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	NR	7E-12		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174554-A	0.668	4E-11	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1054	chr11	61579462	61579463	rs174554	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174554-A	0.63	5E-24		0.062	[0.05-0.074] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1054	chr11	61579759	61579760	rs174555	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174555-T	0.693202	9E-13		0.0314137	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0823	[0.063-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0862	[0.066-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.07	[0.054-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0631	[0.049-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0644	[0.05-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0752	[0.058-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0593	[0.046-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.1273	[0.098-0.157] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0707	[0.054-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0447	[0.034-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0459	[0.035-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0588	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0685	[0.053-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.083	[0.064-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0595	[0.046-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0886	[0.068-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0646	[0.05-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0943	[0.073-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0546	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0798	[0.061-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0978	[0.075-0.12] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0588	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0402	[0.031-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0548	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0817	[0.063-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0686	[0.053-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.1269	[0.098-0.156] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0454	[0.035-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0785	[0.06-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0668	[0.051-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0685	[0.053-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0451	[0.035-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0627	[0.048-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0555	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0685	[0.053-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0483	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.1021	[0.079-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0487	[0.038-0.06] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0781	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0638	[0.049-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0871	[0.067-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.06	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.0697	[0.054-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.1042	[0.08-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0798	[0.061-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.1839	[0.14-0.23] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.1069	[0.082-0.132] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-T	NR	2E-17		0.1241	[0.095-0.153] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0597	[0.046-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.0894	[0.069-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0453	[0.035-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0637	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0594	[0.046-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0451	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0595	[0.046-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-A	NR	2E-17		0.101	[0.078-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0482	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.0868	[0.067-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.048	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.059	[0.045-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0571	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.1035	[0.08-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0547	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-G	NR	2E-17		0.1858	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174555-C	NR	2E-17		0.0457	[0.035-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61579759	61579760	rs174555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q12.2		rs174555-T	0.691	1E-44				Affymetrix [10369434] (imputed)	N
1054	chr11	61579759	61579760	rs174555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174555-C	0.3085	7E-14		0.028962	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61579759	61579760	rs174555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174555-C	0.3087	1E-11		0.0264683	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61579759	61579760	rs174555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174555-C	0.3085	7E-14		0.02905092	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61579759	61579760	rs174555	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs174555-T	0.713	1E-35	(Phosphatidylcholine diacyl C36:3)	0.0553	[0.047-0.064] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61579759	61579760	rs174555	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174555-T	0.7057	6E-15	(Cis/trans-18:2, EA)	0.0034	[0.0026-0.0042] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61579759	61579760	rs174555	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, C11orf9, FADS1, DAGLA, FADS2, FEN1, C11orf10, FADS3, RAB3IL1, BEST1	rs174555-T	0.71	5E-168		0.39	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	11q12.2		rs174556-T	0.329	8E-10		0.0463	[0.032-0.061] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	11q12.2		rs174556-T	0.2949	6E-7		0.0565	[0.034-0.079] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0778	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.1836	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0818	[0.063-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0477	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	2E-17		0.0587	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	2E-17		0.0688	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.0391	[0.03-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0713	[0.055-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.0571	[0.044-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0483	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0884	[0.068-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.0635	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.1837	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.0553	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0731	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0426	[0.033-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.0631	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.0477	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.0792	[0.061-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0879	[0.068-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0478	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0693	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	3E-17		0.0542	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.1837	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.0449	[0.035-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	2E-17		0.0639	[0.049-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0695	[0.053-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0687	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0734	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.1837	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0733	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0688	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	2E-17		0.1094	[0.084-0.135] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0484	[0.037-0.06] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.0856	[0.066-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0535	[0.041-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0746	[0.057-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	2E-17		0.0574	[0.044-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	2E-17		0.0811	[0.062-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.1851	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0734	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	2E-17		0.1264	[0.097-0.156] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0846	[0.065-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	2E-17		0.2138	[0.16-0.26] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.188	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	2E-17		0.0722	[0.056-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0477	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0635	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.1273	[0.098-0.157] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0477	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.184	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0585	[0.045-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0693	[0.053-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0887	[0.068-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.1247	[0.096-0.154] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	3E-17		0.1155	[0.089-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0553	[0.043-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-C	NR	3E-17		0.0873	[0.067-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.0591	[0.045-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	2E-17		0.0702	[0.054-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-A	NR	2E-17		0.1834	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-T	NR	2E-17		0.0369	[0.028-0.045] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174556-G	NR	3E-17		0.038	[0.029-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61580634	61580635	rs174556	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174556-C	0.555018	6E-22	(stearidonate (18:4n3))	0.237	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61580634	61580635	rs174556	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	11q12.2	FADS1	rs174556-T	0.17	2E-10	(arachidonic acid)	0.85	[-1.1688-2.8688] unit increase	Illumina [~ 932000] (imputed)	N
1054	chr11	61580634	61580635	rs174556	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	11q12.2	FADS1	rs174556-T	0.17	5E-10	(arachidonic acid)			Illumina [~ 932000]	N
1054	chr11	61580634	61580635	rs174556	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs174556-T	0.3082	2E-17		0.03290644	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61580634	61580635	rs174556	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174556-T	0.294	3E-14	(Cis/trans-18:2, EA)	0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61580634	61580635	rs174556	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174556-T	0.3	2E-22	(eicosapentaenoate (EPA; 20:5n3))	0.036	[0.028-0.044] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61580634	61580635	rs174556	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS2	rs174556-?	NR	3E-16	(TAG 58:11)	0.29782426	[0.23-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61581367	61581368	rs174557	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q12.2		rs174557-A	0.692423	8E-11		0.0289204	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1054	chr11	61581367	61581368	rs174557	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174557-A	0.554839	5E-29	(docosapentaenoate (n3 DPA; 22:5n3))	0.277	[0.23-0.33] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61581367	61581368	rs174557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174557-G	0.312816	6E-28				Affymetrix, Illumina [23114412] (imputed)	N
1054	chr11	61581367	61581368	rs174557	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174557-G	NR	4E-29	(Phosphatidylcholine with diacyl residue sum C36:4/Lysophosphatidylcholine with acyl residue C20:3)	0.49858	[0.41-0.58] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581449	61581450	rs7394579	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs7394579-A	0.596992	6E-32	(1-(1-enyl-stearoyl)-2-arachidonoyl-GPE (P-18:0/20:4)*)	0.301	[0.25-0.35] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61581449	61581450	rs7394579	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs7394579-G	NR	2E-8	(Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.264318	[0.17-0.36] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581449	61581450	rs7394579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs7394579-G	0.2771	8E-48		0.0573956	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61581449	61581450	rs7394579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q12.2	FADS1, FADS2	rs7394579-G	0.278	3E-33		0.04847727	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	11q12.2		rs174559-A	0.259763202	1E-10		0.152321	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q12.2		rs174559-A	NR	1E-19		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11q12.2		rs174559-A	NR	6E-20		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0604	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0776	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0568	[0.043-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.1854	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	3E-17		0.0466	[0.036-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0597	[0.046-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.1113	[0.085-0.137] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0584	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0721	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0449	[0.035-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	4E-17		0.0481	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0771	[0.059-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.087	[0.067-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.1857	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.1881	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0841	[0.065-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0475	[0.037-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.125	[0.096-0.154] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0702	[0.054-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.063	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	4E-17		0.0636	[0.049-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.1835	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0588	[0.045-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	4E-17		0.0575	[0.044-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0474	[0.036-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	3E-17		0.057	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.0815	[0.062-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0666	[0.051-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	4E-17		0.0693	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.1172	[0.09-0.144] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0736	[0.057-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0619	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	3E-17		0.1115	[0.086-0.137] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.0732	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.0853	[0.066-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0481	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0476	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	3E-17		0.057	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	4E-17		0.0584	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	3E-17		0.0587	[0.045-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	3E-17		0.1695	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0397	[0.03-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.0751	[0.058-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0738	[0.057-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.1953	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	4E-17		0.0816	[0.063-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0837	[0.064-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.1881	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	3E-17		0.0591	[0.045-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0853	[0.066-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0476	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-A	NR	3E-17		0.0569	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0777	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	4E-17		0.0569	[0.044-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-T	NR	3E-17		0.0857	[0.066-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	3E-17		0.0782	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-G	NR	3E-17		0.0695	[0.053-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174559-C	NR	4E-17		0.0779	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581655	61581656	rs174559	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11q12.2	FADS1	rs174559-A	0.2743	3E-13		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1054	chr11	61581655	61581656	rs174559	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174559-G	0.569415	5E-20	(1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)*)	0.227	[0.18-0.28] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61581655	61581656	rs174559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q12.2	FADS1	rs174559-A	0.280314	5E-62		0.05247353	[0.046-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61581655	61581656	rs174559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q12.2	FADS1	rs174559-A	0.280262	8E-42		0.033590544	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61581655	61581656	rs174559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q12.2	FADS1	rs174559-A	0.28018	5E-22		0.0229811	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61581655	61581656	rs174559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174559-G	0.726502	2E-188				Affymetrix, Illumina [22063850] (imputed)	N
1054	chr11	61581655	61581656	rs174559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q12.2	NR	rs174559-G	0.721857	8E-193		0.061991	[0.058-0.066] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1054	chr11	61581655	61581656	rs174559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q12.2		rs174559-?	NR	5E-185				NR [~ 8900000] (imputed)	N
1054	chr11	61581655	61581656	rs174559	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11q12.2	MIR1908	rs174559-A	NR	5E-44		0.0588124	[0.05-0.067] unit decrease	Affymetrix [16832071] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.1725	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	6E-17		0.0661	[0.051-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0672	[0.052-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	6E-17		0.0619	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	4E-17		0.0426	[0.033-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0814	[0.062-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0608	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0481	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	6E-17		0.0775	[0.059-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.1852	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	6E-17		0.0544	[0.042-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.1857	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0595	[0.046-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	6E-17		0.0668	[0.051-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0462	[0.035-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	6E-17		0.0481	[0.037-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.069	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	6E-17		0.067	[0.051-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0445	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0757	[0.058-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.1854	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0777	[0.059-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0703	[0.054-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0855	[0.066-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0621	[0.048-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	5E-17		0.1165	[0.089-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	4E-17		0.1858	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0588	[0.045-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.1854	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.1915	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.1854	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	5E-17		0.0758	[0.058-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	4E-17		0.0721	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.1753	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	6E-17		0.0448	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	6E-17		0.0532	[0.041-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	4E-17		0.186	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	4E-17		0.0432	[0.033-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	4E-17		0.1167	[0.089-0.144] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	5E-17		0.1725	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.063	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	4E-17		0.0583	[0.045-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	5E-17		0.0479	[0.037-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-T	NR	5E-17		0.1854	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0565	[0.043-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	4E-17		0.0485	[0.037-0.06] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.069	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.0669	[0.051-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0766	[0.059-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.0776	[0.06-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.0734	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0719	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.0748	[0.057-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.0648	[0.05-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.1852	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	6E-17		0.1003	[0.077-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.192	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	6E-17		0.0444	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0873	[0.067-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-A	NR	5E-17		0.0602	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	5E-17		0.1858	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-C	NR	4E-17		0.0705	[0.054-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174560-G	NR	5E-17		0.0447	[0.034-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61581763	61581764	rs174560	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	11q12.2		rs174560-T	0.686	1E-11				Affymetrix [10369434] (imputed)	N
1054	chr11	61581763	61581764	rs174560	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174560-T	0.521014	7E-11	(1-stearoyl-GPC (18:0))	0.16	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61581763	61581764	rs174560	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS1	rs174560-T	0.521014	1E-18	(1-(1-enyl-palmitoyl)-GPC (P-16:0)*)	0.214	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61581763	61581764	rs174560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q12.2	FADS1	rs174560-C	0.313738	4E-38		0.030712591	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61581763	61581764	rs174560	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174560-C	NR	1E-20	(PI(18:0;0-20:3;0))	0.3012	[0.24-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61581763	61581764	rs174560	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174560-C	NR	2E-8	(PCO(18:1;0-20:3;0))	0.1816	[0.12-0.24] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61581763	61581764	rs174560	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q12.2	NR	rs174560-C	NR	6E-9		0.792	unit increase	Affymetrix [14661600] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	7E-18	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C42:5)	0.38643	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	5E-24	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.444499	[0.36-0.53] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	5E-20	(Phosphatidylcholine with diacyl residue sum C42:4/Phosphatidylcholine with acyl-alkyl residue sum C38:3)	0.397827	[0.31-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	5E-13	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C42:1)	0.324237	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	4E-28	(Phosphatidylcholine with diacyl residue sum C38:4/Lysophosphatidylcholine with acyl residue C20:3)	0.481575	[0.4-0.57] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	4E-15	(Phosphatidylcholine with diacyl residue sum C40:5/Lysophosphatidylcholine with acyl residue C20:3)	0.348537	[0.26-0.43] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	4E-12	(Phosphatidylcholine with diacyl residue sum C42:1/Phosphatidylcholine with acyl-alkyl residue sum C42:3)	0.310284	[0.22-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	3E-17	(Phosphatidylcholine with acyl-alkyl residue sum C32:2/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.369914	[0.29-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	3E-13	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Sphingomyelin with acyl residue sum C18:1)	0.325269	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	2E-32	(Phosphatidylcholine with acyl-alkyl residue sum C44:4/Phosphatidylcholine with acyl-alkyl residue sum C44:5)	0.518862	[0.44-0.6] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	2E-14	(Phosphatidylcholine with acyl-alkyl residue sum C44:3/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.336433	[0.25-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	1E-30	(Phosphatidylcholine with acyl-alkyl residue sum C44:4/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.510583	[0.43-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	1E-17	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Sphingomyelin with acyl residue sum C16:1)	0.383918	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	1E-12	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C40:4)	0.315009	[0.23-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61581763	61581764	rs174560	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174560-C	NR	3E-10	(Phosphatidylcholine with diacyl residue sum C36:3)	0.278836	[0.19-0.36] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61582296	61582297	rs12361868	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs12361868-C	NR	5E-27		0.0616	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582526	61582527	rs75810419	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs75810419-A	NR	3E-10		0.0494	[0.034-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582526	61582527	rs75810419	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs75810419-A	NR	3E-10		0.0545	[0.037-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.0687	[0.052-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.0623	[0.048-0.077] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	8E-17		0.1127	[0.086-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	1E-16		0.0897	[0.069-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	6E-17		0.0853	[0.065-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.073	[0.056-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.1966	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.1911	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	1E-16		0.081	[0.062-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	8E-17		0.0671	[0.051-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	9E-17		0.0686	[0.052-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	7E-17		0.0648	[0.05-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	9E-17		0.0442	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	7E-17		0.0614	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	9E-17		0.0569	[0.044-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.0722	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.087	[0.066-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	1E-16		0.0864	[0.066-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	9E-17		0.1947	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	1E-16		0.1929	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	8E-17		0.0474	[0.036-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.0842	[0.064-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	7E-17		0.0657	[0.05-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.0428	[0.033-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.1841	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	9E-17		0.068	[0.052-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	8E-17		0.0975	[0.075-0.12] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	7E-17		0.0664	[0.051-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	6E-17		0.0576	[0.044-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	7E-17		0.0647	[0.049-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.1836	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.1903	[0.15-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.0828	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	9E-17		0.0623	[0.048-0.077] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.069	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.0891	[0.068-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	6E-17		0.0626	[0.048-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	8E-17		0.1715	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	9E-17		0.0701	[0.054-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	9E-17		0.1059	[0.081-0.131] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	6E-17		0.0409	[0.031-0.051] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	6E-17		0.0844	[0.065-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	6E-17		0.0854	[0.065-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.1659	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	8E-17		0.1168	[0.089-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	6E-17		0.0841	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.0613	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	7E-17		0.0903	[0.069-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	6E-17		0.0781	[0.06-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.0618	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	6E-17		0.0564	[0.043-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	1E-16		0.0888	[0.068-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	6E-17		0.0774	[0.059-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.0836	[0.064-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	8E-17		0.0719	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	8E-17		0.0637	[0.049-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.0443	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	9E-17		0.0609	[0.047-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	1E-16		0.0687	[0.052-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	7E-17		0.1551	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	9E-17		0.0855	[0.065-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.1805	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	1E-16		0.0419	[0.032-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.0381	[0.029-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	9E-17		0.0682	[0.052-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-A	NR	8E-17		0.1804	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-T	NR	7E-17		0.0876	[0.067-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-G	NR	7E-17		0.0722	[0.055-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	6E-17		0.0515	[0.039-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174561-C	NR	9E-17		0.0611	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61582707	61582708	rs174561	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	MIR1908	rs174561-?		5E-9		0.024	[0.016-0.032] unit increase	Illumina [31500000] (imputed)	N
1054	chr11	61582707	61582708	rs174561	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	MIR1908	rs174561-T	0.554913	1E-21	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.243	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61582707	61582708	rs174561	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MIR1908	rs174561-C	NR	5E-34	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with diacyl residue sum C36:3)	0.545071	[0.46-0.63] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61582707	61582708	rs174561	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MIR1908	rs174561-C	NR	3E-17	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C42:1)	0.384602	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61582707	61582708	rs174561	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MIR1908	rs174561-C	NR	3E-16	(Phosphatidylcholine with acyl-alkyl residue sum C32:1/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.371213	[0.28-0.46] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61582707	61582708	rs174561	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MIR1908	rs174561-C	NR	2E-19	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.404607	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61582707	61582708	rs174561	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	MIR1908	rs174561-C	NR	1E-18	(Phosphatidylcholine with diacyl residue sum C42:1/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.400157	[0.31-0.49] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61585139	61585140	rs116980792	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs116980792-A	NR	3E-28		0.1212	[0.1-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585139	61585140	rs116980792	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs116980792-A	NR	3E-28		0.0744	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0737	[0.056-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0649	[0.049-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0677	[0.052-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0675	[0.051-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0845	[0.065-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0769	[0.059-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0609	[0.047-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0813	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0607	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0744	[0.057-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0501	[0.038-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0615	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0444	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.076	[0.058-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0884	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0685	[0.052-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.068	[0.052-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.1893	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0773	[0.059-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.1814	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.1097	[0.084-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0629	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0629	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0879	[0.067-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0436	[0.033-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0944	[0.072-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0444	[0.034-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0827	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0899	[0.069-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.074	[0.057-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0851	[0.065-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0629	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0689	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0833	[0.064-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0836	[0.064-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.1903	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0626	[0.048-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0504	[0.038-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0702	[0.054-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.1753	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0859	[0.066-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0605	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0934	[0.071-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0844	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0884	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0629	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0695	[0.053-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0687	[0.052-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.174	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0613	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0732	[0.056-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.1823	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.084	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0629	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0621	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0606	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0745	[0.057-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0783	[0.06-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0936	[0.071-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	2E-16		0.0649	[0.049-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0745	[0.057-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0593	[0.045-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0826	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-G	NR	1E-16		0.0678	[0.052-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0837	[0.064-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	2E-16		0.0775	[0.059-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-C	NR	1E-16		0.0612	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.068	[0.052-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-A	NR	1E-16		0.0801	[0.061-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174562-T	NR	1E-16		0.0885	[0.068-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61585143	61585144	rs174562	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174562-A	0.531839	7E-129	(1-arachidonoyl-GPC (20:4n6)*)	0.587	[0.54-0.63] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61585143	61585144	rs174562	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174562-A	0.531839	3E-34	(oleoyl-arachidonoyl-glycerol (18:1/20:4) [1]*)	0.304	[0.25-0.35] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61585143	61585144	rs174562	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174562-A	0.531839	2E-29	(linoleoyl-arachidonoyl-glycerol (18:2/20:4) [2]*)	0.276	[0.23-0.32] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61585143	61585144	rs174562	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174562-A	0.531839	2E-149	(1-stearoyl-2-arachidonoyl-GPC (18:0/20:4))	0.639	[0.59-0.69] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61585143	61585144	rs174562	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174562-A	0.531839	1E-121	(1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4n6))	0.585	[0.54-0.63] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61585143	61585144	rs174562	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11q12.2	FADS2, FADS1, MIR1908, FEN1, TMEM258, MIR611	rs174562-A	0.65436	6E-11		1.0442228	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
1054	chr11	61585143	61585144	rs174562	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174562-G	NR	7E-30	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.496589	[0.41-0.58] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61585143	61585144	rs174562	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174562-G	NR	6E-16	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.355629	[0.27-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61585143	61585144	rs174562	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174562-G	NR	3E-22	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.424191	[0.34-0.51] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61585143	61585144	rs174562	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174562-G	NR	3E-21	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.418017	[0.33-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61585143	61585144	rs174562	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1	rs174562-G	NR	1E-19	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.396611	[0.31-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	6E-128		0.0939693	[0.086-0.102] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	2E-117		0.089993	[0.082-0.098] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.2		rs35473591-C	0.658091	4E-58		0.0618717	[0.054-0.069] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	3E-139		0.103414	[0.095-0.111] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	7E-145		0.103795	[0.096-0.112] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	3E-111		0.0852872	[0.078-0.093] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	1E-118		0.0905497	[0.083-0.098] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	1E-94		0.0785159	[0.071-0.086] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	1E-139		0.0979643	[0.09-0.106] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	7E-144		0.100129	[0.092-0.108] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q12.2		rs35473591-C	0.65808	4E-81		0.0733667	[0.066-0.081] unit increase	NR [11722792] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	FADS2	rs35473591-?		2E-8		0.0376	[0.024-0.051] unit increase	Illumina [31500000] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs35473591-C	0.53355	1E-17	(1,2-dipalmitoyl-GPC (16:0/16:0))	0.215	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	8E-17	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.365477	[0.28-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	8E-15	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.343554	[0.26-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	7E-41	(Phosphatidylcholine with diacyl residue sum C38:3/Lysophosphatidylcholine with acyl residue C20:4)	0.551355	[0.47-0.63] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	6E-14	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.328617	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	3E-44	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with diacyl residue sum C38:5)	0.601789	[0.52-0.68] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	3E-22	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C40:1)	0.42944	[0.34-0.51] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	3E-13	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C42:5)	0.320303	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	2E-48	(Phosphatidylcholine with diacyl residue sum C36:4/Phosphatidylcholine with diacyl residue sum C38:3)	0.624654	[0.54-0.7] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	2E-23	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.430615	[0.35-0.51] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	2E-18	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.381911	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	1E-23	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.438861	[0.35-0.52] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61586328	61586328	rs35473591	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs35473591-CT	NR	1E-17	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C42:5)	0.375213	[0.29-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs174564-A	0.652991	2E-188		0.121598	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1054	chr11	61588304	61588305	rs174564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q12.2		rs174564-A	0.652991	5E-51		0.0640584	[0.056-0.072] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61588304	61588305	rs174564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q12.2		rs174564-A	0.652991	1E-87		0.0842926	[0.076-0.093] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61588304	61588305	rs174564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174564-A	0.652955	2E-152		0.112889	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1054	chr11	61588304	61588305	rs174564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q12.2		rs174564-A	0.652955	4E-130		0.1042	[0.096-0.113] unit increase	NR [11722792] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0867	[0.066-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0869	[0.066-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0518	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.1178	[0.09-0.146] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0889	[0.068-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0442	[0.034-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0939	[0.072-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0806	[0.061-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0619	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0949	[0.072-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0819	[0.062-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0768	[0.059-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0611	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0846	[0.064-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0877	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0871	[0.066-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0759	[0.058-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0839	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0929	[0.071-0.115] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0922	[0.07-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0602	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0596	[0.045-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0674	[0.051-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0827	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0555	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.1172	[0.089-0.145] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0503	[0.038-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0606	[0.046-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0848	[0.065-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0535	[0.041-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0873	[0.067-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.088	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0756	[0.058-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0987	[0.075-0.122] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0602	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.189	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0934	[0.071-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.1228	[0.094-0.152] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0819	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0549	[0.042-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0821	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0677	[0.052-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0877	[0.067-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0752	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.1818	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0919	[0.07-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.1817	[0.14-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0578	[0.044-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0439	[0.034-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0611	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.069	[0.053-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0824	[0.063-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0867	[0.066-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.0752	[0.057-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0469	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.1117	[0.085-0.138] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.053	[0.04-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0934	[0.071-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0838	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0926	[0.07-0.115] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.093	[0.071-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-A	NR	2E-16		0.0833	[0.064-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-C	NR	2E-16		0.093	[0.071-0.115] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-T	NR	2E-16		0.0627	[0.048-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174564-G	NR	2E-16		0.0927	[0.071-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61588304	61588305	rs174564	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q12.2	FADS1	rs174564-A	0.651101	3E-130		0.00561405	[0.0051-0.0061] unit decrease	Affymetrix [13995440] (imputed)	N
1054	chr11	61588304	61588305	rs174564	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q12.2	FADS1, FADS2, TMEM258	rs174564-?	NR	3E-11	(1-arachidonoyl-GPC (20:4n6))	0.54	[NR] unit decrease	Illumina [14760605] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174564-G	0.352419	1E-83				Affymetrix, Illumina [24332387] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174564-G	0.350702	2E-34				Affymetrix, Illumina [24246363] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q12.2	NR	rs174564-G	0.347593	1E-30		0.021924	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q12.2	FADS2	rs174564-A	0.651442	3E-48		0.0319674	[0.028-0.036] unit increase	Affymetrix [NR] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q12.2	FADS2	rs174564-A	0.65149	6E-95		0.0451401	[0.041-0.049] unit increase	Affymetrix [NR] (imputed)	N
1054	chr11	61588304	61588305	rs174564	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q12.2	FADS2	rs174564-?	NR	6E-63		0.0449	[0.04-0.05] unit decrease	Affymetrix [5701386] (imputed)	N
1054	chr11	61588304	61588305	rs174564	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174564-G	NR	4E-13	(TAG(56:6;0))	0.2173	[0.16-0.28] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61588304	61588305	rs174564	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174564-G	NR	4E-33	(PC(18:0;0-20:5;0))	0.3733	[0.31-0.43] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61588304	61588305	rs174564	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q12.2	FADS2	rs174564-G	0.6728	6E-10		0.1696	[0.12-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	6E-25	(Phosphatidylcholine with diacyl residue sum C38:4/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.441026	[0.36-0.52] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	5E-27	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.465781	[0.38-0.55] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	4E-32	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.507788	[0.43-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	4E-25	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with diacyl residue sum C34:2)	0.450238	[0.37-0.53] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-43	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C36:4)	0.588171	[0.51-0.67] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-36	(Phosphatidylcholine with diacyl residue sum C36:2/Lysophosphatidylcholine with acyl residue C20:4)	0.521575	[0.44-0.6] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-36	(Phosphatidylcholine with diacyl residue sum C34:2/Lysophosphatidylcholine with acyl residue C20:4)	0.524786	[0.45-0.6] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-34	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C38:5)	0.524021	[0.44-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-19	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C40:5)	0.391509	[0.31-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	3E-16	(Phosphatidylcholine with diacyl residue sum C30:0/Phosphatidylcholine with diacyl residue sum C32:2)	0.351995	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-42	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C38:4)	0.582478	[0.5-0.66] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-42	(Lysophosphatidylcholine with acyl residue C16:0/Lysophosphatidylcholine with acyl residue C20:4)	0.575391	[0.5-0.65] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-38	(Phosphatidylcholine with diacyl residue sum C32:2/Phosphatidylcholine with diacyl residue sum C34:4)	0.553333	[0.47-0.63] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-35	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C38:4)	0.533243	[0.45-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-28	(Phosphatidylcholine with diacyl residue sum C38:5/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.474674	[0.39-0.56] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-26	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:4)	0.458945	[0.38-0.54] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	2E-13	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C44:5)	0.312607	[0.23-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	1E-52	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C36:4)	0.645129	[0.57-0.72] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	1E-35	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C38:5)	0.537812	[0.46-0.62] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61588304	61588305	rs174564	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174564-G	NR	1E-29	(Phosphatidylcholine with diacyl residue sum C36:4/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.477627	[0.4-0.56] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	11q12.2		rs28456-G	0.388552	2E-8		0.0278095	[0.018-0.038] unit decrease	Illumina [13461863] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q12.2		rs28456-G	NR	8E-21		0.0126	[0.01-0.015] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0984	[0.071-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0752	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0778	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0567	[0.041-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	1E-12		0.0619	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0577	[0.042-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.1854	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.08	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.1045	[0.075-0.134] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	1E-12		0.0554	[0.04-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0419	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0853	[0.062-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.1069	[0.077-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0365	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0779	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.092	[0.067-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0771	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0419	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0419	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0875	[0.063-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	1E-12		0.043	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0618	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	1E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0799	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.1065	[0.077-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0638	[0.046-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	1E-12		0.1231	[0.089-0.157] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0875	[0.063-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.042	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	1E-12		0.0304	[0.022-0.039] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	1E-12		0.1619	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	1E-12		0.0427	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0507	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0622	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0429	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0777	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0554	[0.04-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	1E-12		0.0723	[0.052-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.0838	[0.061-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0784	[0.057-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0722	[0.052-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0532	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.1561	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	1E-12		0.1258	[0.091-0.161] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	2E-12		0.0705	[0.051-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	2E-12		0.0829	[0.06-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	1E-12		0.0588	[0.043-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-G	NR	1E-12		0.0238	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-C	NR	1E-12		0.0398	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-T	NR	1E-12		0.06	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs28456-A	NR	2E-12		0.0424	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61589480	61589481	rs28456	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	11q12.2		rs28456-?	NR	4E-6		0.038	NR unit increase	NR [5890016] (imputed)	N
1054	chr11	61589480	61589481	rs28456	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q12.2	FADS1	rs28456-A	0.6863	4E-12		0.0142	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1054	chr11	61589480	61589481	rs28456	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs28456-A	0.538713	6E-11	(1-arachidonoyl-GPA (20:4))	0.163	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q12.2	FADS1, FADS2	rs28456-G	0.314836	6E-57		0.038462568	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q12.2	FADS1, FADS2	rs28456-G	0.314031	2E-29		0.026989924	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs28456-G	0.326474	7E-102				Affymetrix, Illumina [24588908] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q12.2	NR	rs28456-G	0.314293	6E-88		0.03924	[0.035-0.043] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	11q12.2		rs28456-?	0.3216	4E-9		0.0192	[0.013-0.026] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	11q12.2		rs28456-?	0.2982	6E-6		0.0399	[0.023-0.057] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	11q12.2		rs28456-?	0.3216	5E-10		0.0419	[0.029-0.055] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	11q12.2		rs28456-?	0.3216	2E-8		0.1099	[0.071-0.149] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	11q12.2	FADS1, FADS2	rs28456-?	NR	2E-38		2.185	[1.82-2.55] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	2E-12	(PI(18:0;0-20:4;0))	0.2275	[0.16-0.29] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	2E-32	(PCO(16:0;0-20:4;0))	0.3881	[0.32-0.45] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	1E-19	(PCO(18:1;0-20:4;0))	0.2945	[0.23-0.36] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	9E-15	(PC(18:0;0-22:5;0))	0.2515	[0.19-0.32] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	5E-76	(PC(18:0;0-20:4;0))	0.579	[0.52-0.64] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	7E-20	(LPE(20:4;0))	0.2996	[0.24-0.36] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	5E-48	(LPC(20:4;0))	0.4567	[0.4-0.52] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs28456-G	NR	1E-77	(CE(20:4;0))	0.5852	[0.52-0.65] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61589480	61589481	rs28456	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs28456-G	NR	6E-19	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.39209	[0.31-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61589480	61589481	rs28456	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs28456-G	NR	3E-15	(Phosphatidylcholine with diacyl residue sum C42:1/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.350198	[0.26-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61589480	61589481	rs28456	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs28456-G	NR	1E-18	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C44:5)	0.385672	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61589480	61589481	rs28456	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	11q12.2	C11orf9, DAGLA, C11orf10, FEN1, FADS1, FADS2	rs28456-G	NR	6E-9	(Japanese)	1.18	[1.11-1.24]	Illumina [at least 6195093] (imputed)	N
1054	chr11	61591635	61591636	rs174565	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11q12.2		rs174565-C	0.872262	1E-8		0.0329894	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	11q12.2		rs174565-G	NR	2E-8		0.0782	[0.051-0.105] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	3E-16		0.188	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	3E-16		0.0602	[0.046-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0554	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.0609	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0605	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0459	[0.035-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0875	[0.067-0.108] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.093	[0.071-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0434	[0.033-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	3E-16		0.1507	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0793	[0.06-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.06	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0875	[0.067-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.092	[0.07-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0607	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.1897	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.0496	[0.038-0.061] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.0848	[0.065-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0877	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.0554	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.067	[0.051-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-A	NR	2E-16		0.0859	[0.065-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.06	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0635	[0.048-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0675	[0.051-0.084] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0877	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0876	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0839	[0.064-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.08	[0.061-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0462	[0.035-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0604	[0.046-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0876	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0875	[0.067-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0636	[0.048-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0603	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	3E-16		0.0589	[0.045-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0615	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.088	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-G	NR	2E-16		0.0878	[0.067-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	3E-16		0.0553	[0.042-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0542	[0.041-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-C	NR	2E-16		0.0554	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0855	[0.065-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	2E-16		0.0524	[0.04-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174565-T	NR	3E-16		0.0562	[0.043-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61591635	61591636	rs174565	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	11q12.2	FADS1, FADS2	rs174565-C	0.701	6E-10		0.267	[0.18-0.35] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1054	chr11	61591906	61591907	rs12226877	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q12.2	MYRF, TMEM258, MIR611, FEN1, FADS1, MIR1908, FADS2, FADS3	rs12226877-A	0.293	1E-9		1.08502	[1.06-1.11]	NR [9372253] (imputed)	N
1054	chr11	61591906	61591907	rs12226877	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	11q12.2	MYRF, TMEM258, MIR611, FEN1, FADS1, MIR1908, FADS2, FADS3	rs12226877-A	0.293	3E-8		1.10429		NR [9372253] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs57668028-GAA	0.555982	1E-40	(1-arachidonoyl-GPE (20:4n6)*)	0.342	[0.29-0.39] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs57668028-G	NR	8E-14	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.339838	[0.25-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs57668028-G	NR	6E-15	(Phosphatidylcholine with diacyl residue sum C36:2/Sphingomyelin with acyl residue sum C16:1)	0.355135	[0.27-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs57668028-G	NR	6E-15	(Phosphatidylcholine with diacyl residue sum C34:2/Sphingomyelin with acyl residue sum C16:1)	0.35035	[0.26-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs57668028-G	NR	1E-19	(Phosphatidylcholine with diacyl residue sum C36:3/Sphingomyelin with acyl residue sum C16:1)	0.414122	[0.33-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61591995	61591997	rs57668028	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs57668028-G	NR	1E-8	(Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.261806	[0.17-0.35] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174566-A	0.651878	7E-161		0.10349	[0.096-0.111] unit increase	NR [11722792] (imputed)	N
1054	chr11	61592361	61592362	rs174566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q12.2		rs174566-A	0.651878	1E-83		0.0741511	[0.067-0.082] unit increase	NR [11722792] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial estimated degree of unsaturation	4,348 individuals	NA	11q12.2		rs174566-G	0.31970264	5E-52		0.3528	[0.31-0.4] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	4E-16		0.0747	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	4E-16		0.0673	[0.051-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0715	[0.054-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0712	[0.054-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0706	[0.054-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0715	[0.054-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0678	[0.052-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0625	[0.047-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0648	[0.049-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0469	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0571	[0.043-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0818	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0755	[0.057-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0714	[0.054-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	4E-16		0.0653	[0.05-0.081] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0607	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	4E-16		0.0816	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.06	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0715	[0.054-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.058	[0.044-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0918	[0.07-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0611	[0.046-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0749	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0469	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0536	[0.041-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0836	[0.063-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0814	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0599	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0727	[0.055-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.06	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0677	[0.051-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0616	[0.047-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0605	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0525	[0.04-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0606	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0599	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0618	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0934	[0.071-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.082	[0.062-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0929	[0.071-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0899	[0.068-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0626	[0.048-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0762	[0.058-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.1699	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0622	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0698	[0.053-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0914	[0.069-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0578	[0.044-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.067	[0.051-0.083] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0436	[0.033-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0872	[0.066-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.061	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.1124	[0.085-0.139] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.0709	[0.054-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0572	[0.043-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.1172	[0.089-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0761	[0.058-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	4E-16		0.0554	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0603	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	3E-16		0.1595	[0.12-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0816	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0804	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-C	NR	3E-16		0.0599	[0.046-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	4E-16		0.062	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.087	[0.066-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	3E-16		0.0914	[0.069-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-A	NR	3E-16		0.0571	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-T	NR	4E-16		0.0715	[0.054-0.089] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174566-G	NR	4E-16		0.0919	[0.07-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61592361	61592362	rs174566	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q12.2	FADS2	rs174566-G	0.35	7E-65		17.0	z-score increase	Affymetrix [4311822] (imputed)	N
1054	chr11	61592361	61592362	rs174566	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	11q12.2		rs174566-?	0.3502	2E-8		0.008096	unit decrease	NR [6200000] (imputed)	N
1054	chr11	61592361	61592362	rs174566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q12.2	FADS2	rs174566-A	0.650259	2E-120		0.0486123	[0.045-0.053] unit decrease	Affymetrix [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.2	FADS2	rs174566-A	0.649938	1E-174		0.0562453	[0.052-0.06] unit increase	Affymetrix [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q12.2	FADS2	rs174566-A	0.649794	9E-65		0.0349304	[0.031-0.039] unit increase	Affymetrix [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q12.2	FADS1, FADS2, FEN1, MIR611, MIR1908, MYRF, TMEM258	rs174566-A	0.648975	5E-9		1.0378342	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1054	chr11	61592361	61592362	rs174566	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174566-G	0.4248	1E-7	(CE(18:3;0))	0.1697	[0.11-0.23] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	6E-44	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	5E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	5E-68				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	2E-16	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	1E-8	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	6E-68				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	4E-16	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	2E-8	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	2E-44	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	6E-7	(AA)	0.031	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	5E-48		0.025	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	2E-6	(Hispanic)	0.032	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-27	(EA)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-13	(Asian)	0.02	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	7E-29		0.024	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	4E-6	(Hispanic)	0.037	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-15	(EA)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-10	(Asian)	0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	8E-49				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	6E-8	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	3E-47	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	4E-51				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	2E-8	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	2E-48	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	3E-33		1.774	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	2E-31	(EA)	2.146	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-7	(Hispanic)	2.656	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	5E-22		1.736	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-7	(Hispanic)	3.211	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	1E-17	(EA)	2.117	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	7E-42				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	5E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	3E-40	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q12.2	FADS2	rs174566-G	NR	2E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	3E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	3E-50				Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q12.2	FADS2	rs174566-G	NR	2E-48	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	3E-24	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	2E-26		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	8E-19		0.009227	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q12.2	FADS2	rs174566-G	NR	8E-18	(EA)	0.01435	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	8E-24	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.427452	[0.35-0.51] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	6E-32	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C34:4)	0.504805	[0.42-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	6E-28	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.460557	[0.38-0.54] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	6E-18	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C34:4)	0.366984	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	5E-21	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with acyl-alkyl residue sum C38:0)	0.405654	[0.32-0.49] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	4E-61	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C38:5)	0.690358	[0.61-0.77] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	4E-35	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.526618	[0.45-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	4E-20	(Phosphatidylcholine with acyl-alkyl residue sum C38:2/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.392683	[0.31-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	4E-19	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C40:5)	0.388595	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	3E-44	(Lysophosphatidylcholine with acyl residue C18:1/Lysophosphatidylcholine with acyl residue C20:4)	0.587293	[0.51-0.67] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	3E-37	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.54754	[0.47-0.63] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	3E-23	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C36:5)	0.42408	[0.34-0.51] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-33	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C36:5)	0.511064	[0.43-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-32	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C40:5)	0.510299	[0.43-0.59] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-22	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.419622	[0.34-0.5] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-20	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.404913	[0.32-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-19	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with acyl-alkyl residue sum C34:1)	0.385622	[0.3-0.47] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-17	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.37028	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-16	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C40:6)	0.358584	[0.27-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	2E-15	(Phosphatidylcholine with diacyl residue sum C30:0/Phosphatidylcholine with diacyl residue sum C34:3)	0.350305	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-60	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C38:4)	0.69013	[0.61-0.77] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-31	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with diacyl residue sum C36:5)	0.495456	[0.41-0.58] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-31	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.501424	[0.42-0.58] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-22	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C36:5)	0.420283	[0.34-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-22	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C36:5)	0.418673	[0.34-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-22	(Phosphatidylcholine with acyl-alkyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.411168	[0.33-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-20	(Phosphatidylcholine with diacyl residue sum C38:5/Phosphatidylcholine with acyl-alkyl residue sum C38:3)	0.400939	[0.32-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-19	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.390098	[0.31-0.47] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-18	(Phosphatidylcholine with acyl-alkyl residue sum C38:2/Phosphatidylcholine with acyl-alkyl residue sum C40:4)	0.378422	[0.3-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-18	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.381532	[0.3-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	1E-15	(Phosphatidylcholine with acyl-alkyl residue sum C40:3/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.337478	[0.26-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174566-G	NR	5E-14	(Phosphatidylcholine with diacyl residue sum C36:5)	0.320688	[0.24-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61592361	61592362	rs174566	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	11q12.2	FADS1, FADS2, MYRF, FEN1	rs174566-G	0.32	1E-12		0.904	[0.67-1.14] unit decrease	Illumina [2668805]	N
1054	chr11	61593004	61593005	rs174567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q12.2		rs174567-G	NR	2E-88		0.0486	[0.044-0.053] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q12.2		rs174567-G	NR	3E-128		0.0574	[0.053-0.062] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q12.2		rs174567-G	NR	1E-19		0.0167	[0.013-0.02] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	11q12.2		rs174567-G	NR	1E-11		0.0668	[0.047-0.086] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	6E-16		0.0599	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.1127	[0.085-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.0546	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	7E-16		0.1969	[0.15-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.0891	[0.068-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	4E-16		0.083	[0.063-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	4E-16		0.1557	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0566	[0.043-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.0525	[0.04-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.1054	[0.08-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.1003	[0.076-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0611	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.1181	[0.089-0.147] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0936	[0.071-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0561	[0.043-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.1004	[0.076-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	7E-16		0.0836	[0.063-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	7E-16		0.0836	[0.063-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.062	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.1567	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	5E-16		0.046	[0.035-0.057] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0811	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	5E-16		0.0594	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	5E-16		0.1062	[0.081-0.132] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0565	[0.043-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	5E-16		0.061	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	4E-16		0.0779	[0.059-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	7E-16		0.0822	[0.062-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	4E-16		0.1126	[0.086-0.14] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	5E-16		0.0769	[0.058-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.0614	[0.047-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.1163	[0.088-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.0928	[0.07-0.115] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.091	[0.069-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	4E-16		0.0646	[0.049-0.08] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0751	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0811	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	4E-16		0.2116	[0.16-0.26] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	4E-16		0.178	[0.14-0.22] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	4E-16		0.0817	[0.062-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	6E-16		0.0697	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	6E-16		0.0706	[0.054-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	4E-16		0.066	[0.05-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	6E-16		0.0793	[0.06-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0539	[0.041-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	5E-16		0.0833	[0.063-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	4E-16		0.0432	[0.033-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	7E-16		0.0593	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	4E-16		0.1132	[0.086-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	6E-16		0.0606	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0733	[0.056-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	5E-16		0.0795	[0.06-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0746	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-C	NR	6E-16		0.0469	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0762	[0.058-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	6E-16		0.1379	[0.1-0.17] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.0783	[0.059-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	5E-16		0.0752	[0.057-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	4E-16		0.0693	[0.053-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.0462	[0.035-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	6E-16		0.0605	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	4E-16		0.0808	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.1436	[0.11-0.18] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-G	NR	7E-16		0.058	[0.044-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	4E-16		0.1117	[0.085-0.139] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-T	NR	4E-16		0.0519	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	6E-16		0.0755	[0.057-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174567-A	NR	7E-16		0.1712	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593004	61593005	rs174567	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q12.2		rs174567-A	0.649	8E-19		0.1	[0.08-0.12] % increase	Affymetrix [NR] (imputed)	N
1054	chr11	61593004	61593005	rs174567	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174567-A	0.491175	4E-33	(linoleoyl-arachidonoyl-glycerol (18:2/20:4) [1]*)	0.29	[0.24-0.34] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61593004	61593005	rs174567	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174567-A	0.491175	3E-56	(arachidonoylcholine)	0.383	[0.34-0.43] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61593004	61593005	rs174567	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174567-G	NR	5E-28	(PC(17:0;0-20:4;0))	0.3572	[0.29-0.42] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61593004	61593005	rs174567	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174567-G	NR	4E-30	(PC(16:0;0-22:5;0))	0.3536	[0.29-0.41] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61593004	61593005	rs174567	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174567-G	NR	2E-28	(PC(16:0;0-20:5;0))	0.3365	[0.28-0.4] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61593004	61593005	rs174567	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	11q12.2	FADS2	rs174567-?		2E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [43000000] (imputed)	N
1054	chr11	61593004	61593005	rs174567	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174567-G	NR	2E-13	(Phosphatidylcholine with acyl-alkyl residue sum C42:5/Phosphatidylcholine with acyl-alkyl residue sum C44:3)	0.31854	[0.23-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q12.2		rs174568-T	0.35	9E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	11q12.2		rs174568-T	0.315672888	3E-9		0.139182	[0.093-0.185] mmol/l increase	Illumina [7701709] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	11q12.2		rs174568-T	0.318224529	4E-9		0.131432	[0.088-0.175] mmol/l increase	Illumina [7701709] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	11q12.2		rs174568-T	NR	1E-9		0.0437	[0.03-0.058] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q12.2	NR	rs174568-T	0.347	1E-10				NR [9056863] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	9E-16		0.0782	[0.059-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0516	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0493	[0.037-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	1E-15		0.0806	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	1E-15		0.1528	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	7E-16		0.0796	[0.06-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.0468	[0.035-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0611	[0.046-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.17	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	1E-15		0.0891	[0.067-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0774	[0.059-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	9E-16		0.0853	[0.065-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	8E-16		0.0832	[0.063-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0573	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.1161	[0.088-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.039	[0.029-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.1707	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0465	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	1E-15		0.0596	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	9E-16		0.1704	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	1E-15		0.1135	[0.086-0.141] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0892	[0.067-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.0517	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.0426	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.059	[0.045-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	8E-16		0.0547	[0.041-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0574	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	8E-16		0.0977	[0.074-0.121] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.0894	[0.068-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	1E-15		0.0806	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	7E-16		0.1093	[0.083-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0636	[0.048-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.1988	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.1021	[0.077-0.127] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.0691	[0.052-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.0405	[0.031-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0709	[0.054-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0575	[0.044-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	7E-16		0.0991	[0.075-0.123] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0891	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	7E-16		0.0504	[0.038-0.063] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	7E-16		0.0891	[0.068-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	7E-16		0.08	[0.061-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	9E-16		0.09	[0.068-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.0369	[0.028-0.046] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	7E-16		0.0552	[0.042-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	9E-16		0.091	[0.069-0.113] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.0896	[0.068-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	7E-16		0.0742	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0711	[0.054-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	7E-16		0.0461	[0.035-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	1E-15		0.0901	[0.068-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.0783	[0.059-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.056	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	9E-16		0.2125	[0.16-0.26] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0778	[0.059-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.047	[0.036-0.058] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.0994	[0.075-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	1E-15		0.0631	[0.048-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0736	[0.056-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.051	[0.039-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	1E-15		0.0706	[0.053-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	8E-16		0.0775	[0.059-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	8E-16		0.1088	[0.082-0.135] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-A	NR	1E-15		0.0905	[0.068-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	9E-16		0.0794	[0.06-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	8E-16		0.0871	[0.066-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	1E-15		0.1529	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-C	NR	8E-16		0.0649	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	7E-16		0.1143	[0.086-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-T	NR	9E-16		0.0695	[0.053-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174568-G	NR	1E-15		0.0806	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61593815	61593816	rs174568	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174568-C	0.532731	7E-34	(adrenate (22:4n6))	0.3	[0.25-0.35] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61593815	61593816	rs174568	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	11q12.2	NR	rs174568-T	0.324	2E-48				Affymetrix, Illumina [at least 2500000] (imputed)	N
1054	chr11	61593815	61593816	rs174568	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174568-T	NR	4E-24	(Phosphatidylcholine with diacyl residue sum C38:5/Lysophosphatidylcholine with acyl residue C20:3)	0.435294	[0.35-0.52] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61593815	61593816	rs174568	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174568-T	NR	3E-14	(Phosphatidylcholine with diacyl residue sum C38:0/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.339	[0.25-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61593815	61593816	rs174568	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS1, FADS2	rs174568-T	NR	3E-8	(Phosphatidylcholine with diacyl residue sum C34:4)	0.237543	[0.15-0.32] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-C	NR	1E-15		0.0734	[0.056-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-A	NR	1E-15		0.0506	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-G	NR	1E-15		0.0803	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-T	NR	1E-15		0.101	[0.076-0.126] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-G	NR	1E-15		0.0803	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-A	NR	1E-15		0.0544	[0.041-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-C	NR	1E-15		0.0793	[0.06-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-C	NR	1E-15		0.0472	[0.036-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-G	NR	1E-15		0.0556	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-T	NR	1E-15		0.1042	[0.079-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-G	NR	1E-15		0.0422	[0.032-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61594163	61594164	rs174569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174569-C	NR	1E-15		0.0496	[0.037-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs3834458-CT	0.533436	9E-17	(1-linoleoyl-GPC (18:2))	0.203	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs3834458-CT	0.533436	6E-39	(1,2-dilinoleoyl-GPC (18:2/18:2))	0.313	[0.27-0.36] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs3834458-CT	0.533436	1E-21	(1-linoleoyl-2-linolenoyl-GPC (18:2/18:3)*)	0.232	[0.18-0.28] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs3834458-C	NR	6E-21	(Phosphatidylcholine with diacyl residue sum C36:5/Lysophosphatidylcholine with acyl residue C20:3)	0.400902	[0.32-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs3834458-C	NR	5E-14	(Phosphatidylcholine with acyl-alkyl residue sum C40:5/Phosphatidylcholine with acyl-alkyl residue sum C44:3)	0.335787	[0.25-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs3834458-C	NR	4E-32	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.514307	[0.43-0.6] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs3834458-C	NR	3E-26	(Phosphatidylcholine with diacyl residue sum C38:3/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.464179	[0.38-0.55] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61594920	61594921	rs3834458	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs3834458-C	NR	1E-21	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.421445	[0.34-0.51] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-C	NR	8E-10		0.0428	[0.029-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-G	NR	8E-10		0.0882	[0.06-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-G	NR	8E-10		0.0787	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-A	NR	8E-10		0.0466	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-A	NR	8E-10		0.0408	[0.028-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-C	NR	8E-10		0.0688	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-T	NR	8E-10		0.08	[0.055-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-G	NR	8E-10		0.0455	[0.031-0.06] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-T	NR	8E-10		0.1632	[0.11-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-C	NR	8E-10		0.0533	[0.036-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-G	NR	8E-10		0.0571	[0.039-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-C	NR	8E-10		0.0562	[0.038-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-A	NR	8E-10		0.079	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-A	NR	8E-10		0.0494	[0.034-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-C	NR	8E-10		0.0882	[0.06-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs968567-T	NR	8E-10		0.064	[0.044-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q12.2	FADS2	rs968567-T	0.177	8E-9		0.903		Illumina [715631] (imputed)	N
1054	chr11	61595563	61595564	rs968567	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q12.2	FADS2	rs968567-T	0.177	8E-9		0.903		Illumina [715631] (imputed)	N
1054	chr11	61595563	61595564	rs968567	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs968567-T	0.0808711	6E-12	(dihomo-linolenate (20:3n3 or n6))	0.283	[0.2-0.36] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61595563	61595564	rs968567	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	11q12.2	FADS2, FADS1, FADS3	rs968567-T	0.15	5E-49	(D5D)			Illumina [at least 738879] (imputed)	N
1054	chr11	61595563	61595564	rs968567	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q12.2	FADS1, FADS2, FADS3	rs968567-T	0.18	7E-7	(EA)	0.10388	[0.063-0.145] unit decrease	Illumina [8380626] (imputed)	N
1054	chr11	61595563	61595564	rs968567	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs968567-T	NR	5E-14	(Phosphatidylcholine with diacyl residue sum C42:0/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.395747	[0.29-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61595563	61595564	rs968567	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	11q12.2	FADS2	rs968567-T	0.1806	1E-17		0.12	NR SD units increase	Illumina [21568490] (imputed)	N
1054	chr11	61595563	61595564	rs968567	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11q12.2	FADS2	rs968567-?	NR	1E-7		1.1970314	NR	Illumina [8966411] (imputed)	N
1054	chr11	61595563	61595564	rs968567	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs968567-T	0.1587	1E-18	(lysoPhosphatidylcholine acyl C20:3)	0.0675	[0.052-0.083] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61595563	61595564	rs968567	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs968567-T	0.18	3E-19	(1-eicosatrienoylglycerophosphocholine)	0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61595563	61595564	rs968567	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs968567-T	0.18	2E-21	(dihomo-linolenate (20:3n3 or n6))	0.033	[0.025-0.041] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61595563	61595564	rs968567	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q12.2	FADS1, FADS2, FADS3	rs968567-C	0.83	2E-8	(EA)	1.12	[1.07-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1054	chr11	61595563	61595564	rs968567	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs968567-?	NR	4E-10	(LPC 20:3)	0.30703175	[0.21-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs5792235-CA	0.519725	8E-56	(1-palmitoyl-2-linoleoyl-GPE (16:0/18:2))	0.374	[0.33-0.42] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs5792235-CA	0.519725	7E-19	(1-stearoyl-2-linoleoyl-GPC (18:0/18:2)*)	0.213	[0.17-0.26] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs5792235-CA	0.519725	5E-41	(1-stearoyl-2-linoleoyl-GPE (18:0/18:2)*)	0.318	[0.27-0.37] unit decrease	Illumina [13039987] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	9E-15	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with diacyl residue sum C38:3)	0.343531	[0.26-0.43] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	6E-19	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with diacyl residue sum C36:2)	0.395416	[0.31-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	6E-15	(Phosphatidylcholine with diacyl residue sum C34:1/Phosphatidylcholine with diacyl residue sum C34:4)	0.335276	[0.25-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	3E-34	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C38:5)	0.531533	[0.45-0.61] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	3E-29	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with diacyl residue sum C36:3)	0.481829	[0.4-0.56] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	3E-17	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with diacyl residue sum C36:2)	0.368846	[0.28-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	2E-25	(Phosphatidylcholine with diacyl residue sum C36:5/Phosphatidylcholine with diacyl residue sum C38:3)	0.454654	[0.37-0.54] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	2E-24	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C36:5)	0.443353	[0.36-0.53] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	2E-22	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with diacyl residue sum C38:3)	0.426484	[0.34-0.51] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	2E-16	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with diacyl residue sum C36:1)	0.360572	[0.28-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596322	61596323	rs5792235	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs5792235-C	NR	2E-8	(Phosphatidylcholine with diacyl residue sum C34:4)	0.239467	[0.16-0.32] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large HDL	4,734 individuals	NA	11q12.2		rs99780-T	0.321194211	4E-9		0.134392	[0.09-0.179] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-3 fatty acids	4,734 individuals	NA	11q12.2		rs99780-T	0.323007621	3E-14		0.169399	[0.13-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting docosahexaenoic acid (22:6)	4,734 individuals	NA	11q12.2		rs99780-T	0.323132528	3E-10		0.140763	[0.097-0.184] mmol/l decrease	Illumina [7701709] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q12.2		rs99780-T	NR	2E-52		0.0331	[0.029-0.037] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.1319	[0.09-0.174] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.0517	[0.035-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0545	[0.037-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0673	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.0362	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.0761	[0.052-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0902	[0.061-0.119] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.0447	[0.03-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.0987	[0.067-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0785	[0.053-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.0503	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.0881	[0.06-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0312	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0565	[0.038-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.0742	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0875	[0.059-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.0985	[0.067-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0937	[0.064-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0797	[0.054-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.0451	[0.031-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.0801	[0.054-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.065	[0.044-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.0279	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0427	[0.029-0.056] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0597	[0.041-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0584	[0.04-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.057	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0469	[0.032-0.062] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	8E-10		0.0357	[0.024-0.047] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.0738	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0505	[0.034-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0407	[0.028-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	8E-10		0.0469	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.028	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.0403	[0.027-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0576	[0.039-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	9E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0393	[0.027-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.0705	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0685	[0.047-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0513	[0.035-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	8E-10		0.0778	[0.053-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0707	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.0326	[0.022-0.043] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0545	[0.037-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0305	[0.021-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0357	[0.024-0.047] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0801	[0.054-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0365	[0.025-0.048] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	9E-10		0.0281	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.053	[0.036-0.07] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0593	[0.04-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.0687	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.062	[0.042-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0724	[0.049-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	8E-10		0.0687	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0565	[0.038-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-A	NR	9E-10		0.0372	[0.025-0.049] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-G	NR	8E-10		0.0621	[0.042-0.082] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-T	NR	8E-10		0.028	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs99780-C	NR	9E-10		0.0572	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61596632	61596633	rs99780	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	FADS2	rs99780-?		5E-25		0.0365	[0.03-0.043] unit increase	Illumina [31500000] (imputed)	N
1054	chr11	61596632	61596633	rs99780	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	FADS2	rs99780-?		1E-17		0.0362	[0.028-0.044] unit increase	Illumina [31500000] (imputed)	N
1054	chr11	61596632	61596633	rs99780	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q12.2	FADS2	rs99780-?	NR	7E-79		0.0512	[0.046-0.056] unit increase	Affymetrix [5701386] (imputed)	N
1054	chr11	61596632	61596633	rs99780	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs99780-T	NR	2E-16	(Phosphatidylcholine with diacyl residue sum C34:4/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.356899	[0.27-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-12		0.160103	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-22		0.218983	[0.18-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	5E-12		0.152331	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	6E-23		0.210553	[0.17-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-12		0.157256	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0824	[0.062-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0858	[0.065-0.107] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0699	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-15		0.151467	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0601	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-27		0.167791	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-22		0.148164	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	6E-15		0.125201	[0.094-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-16		0.159794	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-12		0.107663	[0.077-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0697	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.082	[0.062-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.1147	[0.086-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0846	[0.064-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-16		0.0935677	[0.071-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.0576	[0.043-0.072] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.115	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-28		0.156987	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-20		0.14035	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	8E-52		0.188957	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-15		0.0901826	[0.068-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	6E-14		0.082591	[0.061-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	5E-17		0.106487	[0.082-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-30		0.179377	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-31		0.128942	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	5E-17		0.113637	[0.087-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-37		0.220284	[0.19-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	7E-29		0.145885	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:4_[M-H]1-/Phosphatidylethanolamine-P_40:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-10		0.0863469	[0.06-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	8E-11		0.108868	[0.076-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-21		0.157677	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-14		0.098444	[0.073-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-14		0.131374	[0.097-0.165] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-13		0.115226	[0.085-0.146] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-18		0.145967	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0737	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.047	[0.035-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0897	[0.068-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0571	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-11		0.097926	[0.07-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-17		0.126894	[0.098-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-18		0.18222	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-10		0.0960186	[0.066-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-16		0.183346	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-30		0.258646	[0.21-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	6E-24		0.217675	[0.18-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-47		0.323489	[0.28-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-14		0.167321	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-48		0.32938	[0.29-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	5E-16		0.174901	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-24		0.142695	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-32		0.205283	[0.17-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-26		0.158729	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-23		0.177447	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-23		0.175202	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	8E-42		0.194284	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-41		0.227532	[0.19-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-18		0.159261	[0.12-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	8E-14		0.13006	[0.096-0.164] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-36		0.23067	[0.19-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-12		0.0966614	[0.069-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-11		0.144991	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	5E-11		0.142911	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-21		0.206733	[0.16-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-26		0.192998	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-10		0.0872402	[0.061-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-10		0.118563	[0.083-0.155] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0812	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0887	[0.067-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0802	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.047	[0.035-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0803	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.1141	[0.086-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.063	[0.048-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0789	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0814	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.0427	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0472	[0.036-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0802	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0703	[0.053-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0804	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0471	[0.036-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.1425	[0.11-0.18] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0796	[0.06-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0542	[0.041-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.0786	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0473	[0.036-0.059] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0587	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-15		0.0534	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0581	[0.044-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	6E-110		0.314627	[0.29-0.34] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-25		0.176469	[0.14-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-22		0.16893	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-10		0.0935783	[0.064-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-106		0.375874	[0.34-0.41] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-10		0.0814535	[0.056-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0601	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0866	[0.065-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-25		0.183409	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0699	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	9E-20		0.14072	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0802	[0.061-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-50		0.173256	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-14		0.108653	[0.081-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-12		0.105064	[0.076-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-31		0.145516	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	3E-22		0.106315	[0.085-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-22		0.116599	[0.093-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	4E-15		0.13863	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-54		0.265421	[0.23-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	2E-49		0.222107	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-27		0.168164	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174570-T	NR	1E-10		0.0904931	[0.063-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-G	NR	1E-15		0.0778	[0.059-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-A	NR	1E-15		0.0419	[0.032-0.052] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174570-C	NR	1E-15		0.0896	[0.068-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597211	61597212	rs174570	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q12.2		rs174570-?	NR	3E-8		0.912521	[0.88-0.95]	NR [685523]	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	2E-41		0.0485	[0.041-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	7E-50		0.0533	[0.046-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	8E-11		0.0234	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	8E-12		0.0258	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	4E-16		0.0305	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	5E-38		0.0463	[0.039-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	4E-9		0.0221	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	1E-27		0.0392	[0.032-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	3E-59		0.0609	[0.053-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	3E-12		0.0256	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	4E-11		0.0248	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	4E-46		0.0513	[0.044-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q12.2	NR	rs174570-T	NR	1E-24		0.0385	[0.031-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174570-C	0.629012	2E-15	(docosapentaenoate (n6 DPA; 22:5n6))	0.211	[0.16-0.26] unit increase	Illumina [13039987] (imputed)	N
1054	chr11	61597211	61597212	rs174570	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	11q12.2	intergenic	rs174570-?	NR	5E-7	(spine area MTAG)	0.172	[NR] unit decrease	Affymetrix [NR]	N
1054	chr11	61597211	61597212	rs174570	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	11q12.2	NR	rs174570-?	NR	3E-10	(conditional)	0.078	[0.054-0.102] unit decrease (conditional)	Illumina [1770809] (imputed)	N
1054	chr11	61597211	61597212	rs174570	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174570-?	NR	6E-10		0.03272716	[0.022-0.043] unit increase	Illumina [31978265] (imputed)	N
1054	chr11	61597211	61597212	rs174570	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174570-?	NR	8E-8		2.092772	[1.33-2.86] unit decrease	Illumina [31808917] (imputed)	N
1054	chr11	61597211	61597212	rs174570	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174570-T	0.1353	1E-7	(Cis/trans-18:2, EA)	0.0032	[0.002-0.0044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	11q12.2	FADS2	rs174570-C	0.55	2E-7		0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1054	chr11	61597211	61597212	rs174570	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	11q12.2	FADS2, FADS3	rs174570-G	0.83	4E-13		0.11	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1054	chr11	61597211	61597212	rs174570	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	11q12.2	FADS2, FADS3	rs174570-G	0.83	4E-6		0.06	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1054	chr11	61597211	61597212	rs174570	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	11q12.2	FADS2, FADS3	rs174570-G	0.83	2E-10		0.09	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
1054	chr11	61597460	61597461	rs78596000	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs78596000-A	NR	4E-10		0.0556	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597460	61597461	rs78596000	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs78596000-A	NR	4E-10		0.0335	[0.023-0.044] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-35		0.195018	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-17		0.132347	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-26		0.164332	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-59		0.249988	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-26		0.16517	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-33		0.183243	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-61		0.242413	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-29		0.170439	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-16		0.126698	[0.097-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-15		0.119387	[0.089-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-17		0.128058	[0.098-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.1208	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	2E-23		0.0633	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.1093	[0.088-0.131] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.0776	[0.062-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.0591	[0.048-0.071] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-11		0.0738224	[0.052-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-17		0.0997238	[0.076-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-16		0.0940348	[0.072-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-24		0.0827	[0.067-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-40		0.173837	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-27		0.130718	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-20		0.120201	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-24		0.1047	[0.084-0.125] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.088	[0.071-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.1209	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-32		0.116942	[0.098-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-19		0.100445	[0.078-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.108316	[0.087-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-91		0.219486	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-42		0.143906	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-13		0.100344	[0.074-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-11		0.0711815	[0.05-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-10		0.0515239	[0.036-0.067] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-28		0.122133	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-39		0.175957	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-10		0.0952624	[0.065-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-31		0.125028	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0867	[0.07-0.104] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.0965	[0.077-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.0998	[0.08-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.1096	[0.088-0.131] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.1208	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.1037	[0.084-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.0712	[0.057-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.061	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-18		0.0885273	[0.069-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-28		0.0863963	[0.071-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.115054	[0.092-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.0951	[0.076-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.0604	[0.049-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-13		0.0713471	[0.052-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-80		0.186516	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-64		0.175474	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-150		0.225355	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-80		0.149172	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-21		0.0727054	[0.058-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-19		0.0887953	[0.07-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-26		0.0940927	[0.077-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-59		0.175559	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-53		0.117914	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-32		0.109989	[0.092-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-69		0.209985	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-15		0.0571538	[0.043-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.100936	[0.081-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-73		0.164401	[0.15-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-24		0.118	[0.095-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-50		0.170309	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-27		0.0973275	[0.08-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-34		0.147194	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-18		0.100514	[0.078-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-16		0.0886415	[0.068-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-31		0.136372	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0843	[0.068-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0784	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.1209	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.0615	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-22		0.0979563	[0.078-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-24		0.10174	[0.082-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-49		0.152313	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-34		0.173161	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-26		0.11185	[0.091-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-28		0.169188	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-69		0.270914	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-53		0.226468	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-17		0.129832	[0.099-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-117		0.353277	[0.32-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-62		0.25973	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-27		0.170325	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-33		0.18181	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-128		0.37261	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-24		0.090875	[0.073-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-17		0.121738	[0.093-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-112		0.33456	[0.31-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-34		0.119228	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-24		0.0985565	[0.079-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-76		0.222086	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-95		0.216412	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-40		0.164011	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-23		0.126677	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-47		0.174516	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-66		0.171166	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-79		0.220213	[0.2-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-10		0.0571393	[0.04-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-35		0.157117	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-25		0.108902	[0.088-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-41		0.161937	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-74		0.230683	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-37		0.12436	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-32		0.180991	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-31		0.125623	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-16		0.126682	[0.097-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-39		0.195872	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-54		0.230365	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-13		0.113714	[0.084-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-49		0.185018	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-15		0.0726854	[0.054-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-11		0.0863945	[0.062-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.1198	[0.096-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.1209	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	9E-24		0.0604	[0.049-0.072] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.1159	[0.093-0.139] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-24		0.1212	[0.098-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.1208	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.1208	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	2E-23		0.0953	[0.077-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.0921	[0.074-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.1208	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	8E-24		0.0786	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	1E-23		0.0872	[0.07-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	2E-23		0.0558	[0.045-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	8E-24		0.0781	[0.063-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	8E-24		0.1035	[0.083-0.124] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	7E-24		0.0995	[0.08-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.141	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0724	[0.058-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	8E-24		0.072	[0.058-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	2E-23		0.1203	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.0724	[0.058-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.0722	[0.058-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	8E-24		0.0716	[0.058-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	2E-23		0.0966	[0.078-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	9E-24		0.0737	[0.059-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.0952	[0.077-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.1411	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0954	[0.077-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.141	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-11		0.0758305	[0.054-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	1E-23		0.0765	[0.062-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.087	[0.07-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.0773	[0.062-0.093] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.1208	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-281		0.3507	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-69		0.205679	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-44		0.168159	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-10		0.0617264	[0.043-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-19		0.0921227	[0.072-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-17		0.0999717	[0.077-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	5E-258		0.407216	[0.38-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-26		0.0941151	[0.077-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-2O_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-10		0.0740638	[0.051-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	9E-24		0.1209	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-12		0.0859786	[0.062-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.0911	[0.073-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-42		0.16759	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	1E-23		0.1208	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-38		0.137801	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-C	NR	9E-24		0.0722	[0.058-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	8E-120		0.186463	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-10		0.0502504	[0.035-0.066] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-15		0.0779883	[0.059-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-30		0.118885	[0.098-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-73		0.156129	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-70		0.134926	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-98		0.173853	[0.16-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-11		0.0749408	[0.053-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-12		0.0771749	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-23		0.1094	[0.088-0.131] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.099	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-31		0.142307	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	7E-13		0.0766691	[0.056-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	2E-146		0.304848	[0.28-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	3E-33		0.124912	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-41		0.14466	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-14		0.0803468	[0.06-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	6E-25		0.0998895	[0.081-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_15:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	4E-10		0.0650471	[0.045-0.085] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-11		0.0627027	[0.045-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-A	NR	9E-24		0.0971	[0.078-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	7E-24		0.0957	[0.077-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-G	NR	1E-23		0.0865	[0.069-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs1535-T	NR	2E-23		0.0999	[0.08-0.119] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61597971	61597972	rs1535	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q12.2	FADS2	rs1535-A	0.660367	4E-14		1.0492396	[1.03626724958544-1.06237449777925]	NR [9572556] (imputed)	N
1054	chr11	61597971	61597972	rs1535	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs1535-?	NR	9E-18	(SM)	0.04962552	NR unit decrease	Illumina [609262]	N
1054	chr11	61597971	61597972	rs1535	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs1535-?	NR	5E-11	(M_VLDL_P)	0.048970852	NR unit increase	Illumina [609262]	N
1054	chr11	61597971	61597972	rs1535	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q12.2	FADS2	rs1535-G	0.347774	3E-31		0.0792125	[0.066-0.093] unit increase	Affymetrix [9463307] (imputed)	N
1054	chr11	61597971	61597972	rs1535	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs1535-G	NR	8E-15	(PE(18:0;0-18:2;0))	0.2557	[0.19-0.32] unit increase	Illumina [~ 9300000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs1535-G	NR	2E-43	(PC(18:1;0-20:4;0))	0.4404	[0.38-0.5] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q12.2		rs1535-A	0.6713	1E-17		0.0213	[0.016-0.026] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61597971	61597972	rs1535	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	11q12.2		rs1535-A	0.6477	2E-14		1.2921	[0.96-1.62] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61597971	61597972	rs1535	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11q12.2		rs1535-A	0.6469	6E-14		0.0086	[0.0064-0.0108] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1054	chr11	61597971	61597972	rs1535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q12.2		rs1535-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	11q12.2	NR	rs1535-A	0.65	4E-8	(EA)	1.07	[1.05-1.10]	Affymetrix, Illumina [12931465] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	8E-16	(Phosphatidylcholine with diacyl residue sum C34:3/Phosphatidylcholine with diacyl residue sum C36:6)	0.353321	[0.27-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	5E-16	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.353448	[0.27-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	3E-19	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.385795	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	3E-18	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:6)	0.386446	[0.3-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	3E-14	(Phosphatidylcholine with acyl-alkyl residue sum C36:3/Hydroxysphingomyelin with acyl residue sum C22:2)	0.326039	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	3E-12	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C44:5)	0.304566	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	2E-18	(Phosphatidylcholine with acyl-alkyl residue sum C36:1/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.371389	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	2E-17	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Hydroxysphingomyelin with acyl residue sum C22:2)	0.372567	[0.29-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	2E-16	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.359791	[0.28-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	1E-16	(Phosphatidylcholine with diacyl residue sum C36:3/Phosphatidylcholine with acyl-alkyl residue sum C44:5)	0.359305	[0.28-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	1E-13	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C42:1)	0.329548	[0.24-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs1535-G	NR	1E-13	(Phosphatidylcholine with acyl-alkyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.321785	[0.24-0.41] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61597971	61597972	rs1535	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs1535-A	0.637	1E-43	(Trans-ethnic initial)	0.0497	[0.042-0.057] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	11q12.2	FADS1, FADS2, FADS3	rs1535-A	0.637	5E-45	(Trans-ethnic initial)	0.0529	[0.045-0.06] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q12.2	NR	rs1535-?	NR	3E-9	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs1535-A	0.6784	8E-48	(Phosphatidylcholine acyl-alkyl C36:3)	0.0687	[0.059-0.078] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61597971	61597972	rs1535	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs1535-A	0.6776	8E-18	(Phosphatidylcholine diacyl C34:3)	0.0458	[0.035-0.056] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61597971	61597972	rs1535	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs1535-A	0.6659	5E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61597971	61597972	rs1535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS2	rs1535-A	NR	3E-152		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1054	chr11	61597971	61597972	rs1535	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS2	rs1535-A	NR	3E-63		0.02	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61597971	61597972	rs1535	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	11q12.2	FADS2	rs1535-G	0.18	4E-7	(HDL)	0.03	[0.02-0.04] mmol/l decrease	Illumina [308011]	N
1054	chr11	61597971	61597972	rs1535	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	11q12.2	FEN, FADS1, FADS2	rs1535-G	0.32	7E-6	(HDL, sum)			Illumina [~ 2500000] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	1E-15		0.055	[0.041-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0594	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0607	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0427	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	2E-15		0.089	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0591	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	2E-15		0.2	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0889	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	2E-15		0.0787	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	2E-15		0.0569	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0569	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	2E-15		0.1141	[0.086-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	2E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0583	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0569	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	2E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0595	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0736	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	2E-15		0.1146	[0.086-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	1E-15		0.167	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	1E-15		0.0569	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.1693	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	1E-15		0.1414	[0.11-0.18] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0695	[0.052-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0606	[0.046-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0674	[0.051-0.084] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0602	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	1E-15		0.0736	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-A	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0699	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.2	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0688	[0.052-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0612	[0.046-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	1E-15		0.0885	[0.067-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	2E-15		0.0742	[0.056-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.1148	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	1E-15		0.0884	[0.067-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0562	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-T	NR	1E-15		0.1149	[0.087-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-G	NR	1E-15		0.0899	[0.068-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174572-C	NR	2E-15		0.0698	[0.053-0.087] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61598287	61598288	rs174572	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	11q12.2	FADS2	rs174572-T	0.268763	7E-12		0.06980737	[0.05-0.09] unit decrease	Affymetrix [7288503] (imputed)	N
1054	chr11	61598390	61598391	rs79976480	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs79976480-C	NR	5E-10		0.0796	[0.055-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598390	61598391	rs79976480	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs79976480-T	NR	5E-10		0.0776	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61598390	61598391	rs79976480	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs79976480-G	NR	5E-10		0.0776	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599328	61599329	rs117553420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117553420-G	NR	7E-28		0.111	[0.091-0.131] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599328	61599329	rs117553420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117553420-C	NR	7E-28		0.1256	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599328	61599329	rs117553420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117553420-G	NR	7E-28		0.0721	[0.059-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q12.2		rs61897793-A	0.15	4E-15		7.85	z score increase	Affymetrix [9061022] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q12.2		rs61897793-A	0.15	2E-11		6.69	z score increase	Affymetrix [9061022] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	5E-12		0.134982	[0.097-0.173] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-18		0.167661	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-12		0.13054	[0.094-0.167] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-23		0.180157	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-11		0.0945705	[0.066-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-C	NR	8E-11		0.0847	[0.059-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-14		0.122008	[0.09-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-17		0.127525	[0.098-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-18		0.106098	[0.082-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-12		0.0943479	[0.068-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-41		0.178332	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-10		0.0814889	[0.056-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	5E-13		0.119755	[0.087-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-11		0.0866032	[0.061-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-31		0.139669	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-25		0.131804	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-55		0.165497	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-53		0.14744	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	9E-11		0.0778016	[0.054-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	9E-18		0.113245	[0.087-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	7E-13		0.0675517	[0.049-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-16		0.12142	[0.093-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-24		0.113748	[0.092-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	6E-16		0.113537	[0.086-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-12		0.101913	[0.073-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-11		0.0953603	[0.067-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	5E-11		0.0810737	[0.057-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	6E-20		0.115236	[0.091-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-22		0.186305	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-17		0.155426	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-39		0.248017	[0.21-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	7E-76		0.356521	[0.32-0.39] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-46		0.276275	[0.24-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	3E-11		0.12348	[0.087-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-44		0.267863	[0.23-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-26		0.116431	[0.095-0.138] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-75		0.337371	[0.3-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-24		0.150566	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	9E-49		0.187959	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-13		0.107651	[0.079-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-13		0.0904216	[0.067-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-18		0.125761	[0.098-0.154] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-10		0.0804098	[0.055-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	5E-16		0.119761	[0.091-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-19		0.139793	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-16		0.0995737	[0.076-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-14		0.14621	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-15		0.106037	[0.08-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-21		0.173543	[0.14-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-19		0.16586	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	2E-12		0.108769	[0.079-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-11		0.0892	[0.062-0.116] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-T	NR	8E-11		0.0837	[0.058-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-T	NR	8E-11		0.0558	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-G	NR	8E-11		0.031	[0.022-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-C	NR	8E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-G	NR	8E-11		0.0806	[0.056-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-C	NR	8E-11		0.138	[0.096-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-T	NR	8E-11		0.0514	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-C	NR	8E-11		0.0535	[0.037-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-G	NR	8E-11		0.0565	[0.039-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-C	NR	8E-11		0.0514	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-93		0.245665	[0.22-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	9E-28		0.1561	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-12		0.104043	[0.075-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-83		0.281429	[0.25-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-11		0.0990516	[0.07-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-13		0.0952361	[0.07-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-38		0.126581	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-11		0.0558	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	6E-28		0.105646	[0.087-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-10		0.0800176	[0.055-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	6E-23		0.103852	[0.083-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	9E-30		0.105249	[0.087-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	1E-51		0.152794	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs61897793-A	NR	4E-49		0.213171	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-A	NR	8E-11		0.0542	[0.038-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599346	61599347	rs61897793	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897793-G	NR	8E-11		0.0778	[0.054-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61599990	61599991	rs11230803	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs11230803-G	NR	5E-30		0.1499	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0516	[0.039-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0849	[0.064-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0558	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0557	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0599	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.063	[0.048-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0899	[0.068-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0783	[0.059-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0811	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0886	[0.067-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0688	[0.052-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.1045	[0.079-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0505	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0693	[0.052-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.09	[0.068-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.0562	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0789	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.0419	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.1995	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0544	[0.041-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0359	[0.027-0.045] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0468	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0828	[0.062-0.103] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.1066	[0.08-0.133] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0423	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0761	[0.057-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0887	[0.067-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0682	[0.051-0.085] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0696	[0.053-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0892	[0.067-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0741	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0717	[0.054-0.089] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0423	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0522	[0.039-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.0377	[0.028-0.047] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0693	[0.052-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0562	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0812	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-C	NR	2E-15		0.0908	[0.068-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0694	[0.052-0.086] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.0603	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-G	NR	2E-15		0.056	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.056	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-T	NR	2E-15		0.0568	[0.043-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0774	[0.058-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600326	61600327	rs174573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174573-A	NR	2E-15		0.0764	[0.058-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q12.2		rs174574-A	0.350602	7E-44		0.0538123	[0.046-0.061] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61600341	61600342	rs174574	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q12.2		rs174574-A	0.350605	2E-97		0.0877297	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
1054	chr11	61600341	61600342	rs174574	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q12.2		rs174574-A	0.350602	3E-36		0.0490002	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q12.2		rs174574-C	NR	7E-110		0.0465	[0.042-0.051] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11q12.2		rs174574-C	NR	8E-20		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-49		0.0263	[0.023-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q12.2		rs174574-C	NR	5E-24		0.0174	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.1146	[0.086-0.143] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	3E-15		0.2098	[0.16-0.26] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0549	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	3E-15		0.0557	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.2633	[0.2-0.33] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0464	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0838	[0.063-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0737	[0.055-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	3E-15		0.0739	[0.056-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0447	[0.034-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0551	[0.041-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0819	[0.062-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.1851	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.042	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0564	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0603	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0831	[0.063-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0538	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0557	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.1143	[0.086-0.143] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.2624	[0.2-0.33] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.082	[0.062-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0972	[0.073-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0515	[0.039-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0739	[0.056-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0391	[0.029-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0422	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0844	[0.063-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0786	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0877	[0.066-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.1045	[0.079-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0733	[0.055-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0782	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0506	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.1515	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0682	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0694	[0.052-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0621	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.055	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0932	[0.07-0.116] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0742	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.0779	[0.059-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.081	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.076	[0.057-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.055	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.085	[0.064-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0879	[0.066-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.042	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	3E-15		0.0739	[0.056-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	2E-15		0.0564	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.0846	[0.064-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.1136	[0.086-0.142] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-G	NR	2E-15		0.046	[0.035-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	3E-15		0.0737	[0.055-0.092] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-C	NR	3E-15		0.083	[0.062-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	2E-15		0.1543	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.0617	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-T	NR	2E-15		0.1136	[0.085-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174574-A	NR	3E-15		0.202	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61600341	61600342	rs174574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q12.2	FADS2	rs174574-C	0.646625	6E-18		0.020347483	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr11	61600341	61600342	rs174574	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174574-C	NR	4E-12	(PC(16:0;0-18:2;0))	0.2191	[0.16-0.28] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.2		rs174574-?	NR	3E-17		0.018426	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1054	chr11	61600341	61600342	rs174574	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174574-C	NR	3E-14	(Phosphatidylcholine with acyl-alkyl residue sum C42:3/Phosphatidylcholine with acyl-alkyl residue sum C44:6)	0.323843	[0.24-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61600341	61600342	rs174574	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174574-C	NR	2E-17	(Phosphatidylcholine with diacyl residue sum C42:4/Phosphatidylcholine with acyl-alkyl residue sum C38:2)	0.366461	[0.28-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61600341	61600342	rs174574	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174574-C	NR	1E-13	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Sphingomyelin with acyl residue sum C16:1)	0.328301	[0.24-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1054	chr11	61600341	61600342	rs174574	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.2	FADS2	rs174574-A	0.353366	5E-9		0.0202955	[0.013-0.027] unit increase	NR [17166351] (imputed)	N
1054	chr11	61600341	61600342	rs174574	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	11q12.2	FADS2	rs174574-A	NR	8E-10				NR [2501749] (imputed)	N
1054	chr11	61600341	61600342	rs174574	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174574-A	0.3355	3E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174574-?	NR	7E-7	(PC 36:5)	0.1743322	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174574-?	NR	3E-6	(tryptophan)	0.1679416	[0.098-0.238] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174574-?	NR	1E-7	(TAG 56:3)	0.19050953	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174574-?	NR	1E-6	(PC 32:2)	0.17325531	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174574-?	NR	1E-13	(PC 34:2)	0.26274318	[0.19-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1054	chr11	61600341	61600342	rs174574	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS2	rs174574-A	NR	4E-55		0.08	[NR] % decrease	Affymetrix, Illumina [NR]	N
1054	chr11	61601201	61601202	rs76498378	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs76498378-C	NR	3E-10		0.0309	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601201	61601202	rs76498378	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs76498378-C	NR	3E-10		0.0849	[0.058-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601201	61601202	rs76498378	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs76498378-C	NR	3E-10		0.0579	[0.04-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0744	[0.054-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0437	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-T	NR	5E-13		0.0517	[0.038-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0841	[0.061-0.107] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0437	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-T	NR	5E-13		0.0837	[0.061-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0884	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0605	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0807	[0.059-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0601	[0.044-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-T	NR	5E-13		0.0537	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0558	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0858	[0.062-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0715	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0768	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0592	[0.043-0.075] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0898	[0.065-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-T	NR	5E-13		0.0609	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0982	[0.072-0.125] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0807	[0.059-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.1883	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0537	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-C	NR	5E-13		0.0804	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.1896	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0808	[0.059-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0746	[0.054-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0615	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.1426	[0.1-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.1609	[0.12-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-T	NR	5E-13		0.1907	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0436	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0883	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-G	NR	5E-13		0.0743	[0.054-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601377	61601378	rs2524296	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524296-A	NR	5E-13		0.0863	[0.063-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.0736	[0.053-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0431	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.0386	[0.028-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0639	[0.046-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0769	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0877	[0.063-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.031	[0.022-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.06	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.0393	[0.029-0.05] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.0427	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.0419	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.1062	[0.077-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.0396	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.0768	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0296	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.054	[0.039-0.069] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.156	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0624	[0.045-0.08] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.0526	[0.038-0.067] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0773	[0.056-0.099] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.0427	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0238	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.0763	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.0617	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.0622	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-C	NR	1E-12		0.0396	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-T	NR	1E-12		0.0867	[0.063-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-A	NR	1E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601871	61601872	rs2845574	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845574-G	NR	1E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0732	[0.053-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.1067	[0.077-0.136] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.1773	[0.13-0.23] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.092	[0.067-0.117] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0534	[0.039-0.068] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0799	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.095	[0.069-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.0729	[0.053-0.093] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0433	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0671	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0396	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.0851	[0.062-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0622	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0397	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0397	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-C	NR	1E-12		0.0755	[0.055-0.096] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.1665	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.0817	[0.059-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0866	[0.063-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0397	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0691	[0.05-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0737	[0.053-0.094] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-T	NR	1E-12		0.0421	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.0862	[0.062-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-G	NR	1E-12		0.0397	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845573-A	NR	1E-12		0.059	[0.043-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61601907	61601908	rs2845573	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2845573-A	0.9173	1E-8	(Cis/trans-18:2, EA)	0.0044	[0.0028-0.006] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0871	[0.066-0.109] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0421	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0392	[0.029-0.049] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0722	[0.054-0.09] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0419	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.063	[0.047-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0619	[0.047-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0821	[0.062-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0513	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.1978	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0551	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0548	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.083	[0.062-0.104] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.078	[0.059-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0419	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0415	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0522	[0.039-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0938	[0.07-0.117] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0522	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0595	[0.045-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0877	[0.066-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0558	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.1904	[0.14-0.24] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0418	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0548	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.042	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0898	[0.067-0.112] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.1687	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0502	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.1043	[0.078-0.13] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0842	[0.063-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0683	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.06	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0843	[0.063-0.105] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.1687	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0548	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0593	[0.045-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0419	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0845	[0.064-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0845	[0.064-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.1409	[0.11-0.18] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-C	NR	3E-15		0.0601	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-G	NR	3E-15		0.0845	[0.064-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-A	NR	3E-15		0.0761	[0.057-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174575-T	NR	3E-15		0.0547	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61602002	61602003	rs174575	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174575-C	0.7453	4E-6	(Cis/trans-18:2, EA)	0.0021	[0.0011-0.0031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61602458	61602461	rs138766446	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11q12.2	FADS1, FADS2	rs138766446-I	0.7348	3E-11		0.6238	[0.44-0.81] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0618	[0.045-0.079] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	1E-12		0.0315	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.1009	[0.073-0.129] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	1E-12		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.043	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	1E-12		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	1E-12		0.0863	[0.063-0.11] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	1E-12		0.0749	[0.054-0.095] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	1E-12		0.0723	[0.053-0.092] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	1E-12		0.0689	[0.05-0.088] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0595	[0.043-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	1E-12		0.0763	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0829	[0.06-0.106] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0619	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	1E-12		0.1442	[0.1-0.18] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	1E-12		0.0423	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.1006	[0.073-0.128] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0891	[0.065-0.114] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	1E-12		0.0578	[0.042-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	1E-12		0.0597	[0.043-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0793	[0.058-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0862	[0.062-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0431	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.239	[0.17-0.3] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.058	[0.042-0.074] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0768	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.1231	[0.089-0.157] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0305	[0.022-0.039] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	1E-12		0.0432	[0.031-0.055] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0431	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.0423	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-A	NR	9E-13		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	1E-12		0.0894	[0.065-0.114] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.0871	[0.063-0.111] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-T	NR	9E-13		0.1688	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-G	NR	9E-13		0.0423	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727270-C	NR	9E-13		0.0776	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	11q12.2	FADS2	rs2727270-T	0.163	3E-7		0.402	[0.25-0.55] unit decrease	Illumina [621723]	N
1054	chr11	61603236	61603237	rs2727270	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs2727270-?	NR	7E-27	(LA)	0.06747133	NR unit increase	Illumina [609262]	N
1054	chr11	61603236	61603237	rs2727270	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs2727270-?	NR	6E-16	(LA_FA)	0.072132014	NR unit increase	Illumina [609262]	N
1054	chr11	61603236	61603237	rs2727270	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs2727270-?	NR	5E-6	(LA_FA)	0.056013215	NR unit increase	Illumina [609262]	N
1054	chr11	61603236	61603237	rs2727270	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	11q12.2	FADS2	rs2727270-?	NR	8E-9	(DHA)	0.092559755	NR unit increase	Illumina [609262]	N
1054	chr11	61603236	61603237	rs2727270	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	11q12.2	FADS2	rs2727270-?	NR	5E-8	(DHA)	0.09389597	NR unit increase	Illumina [609262]	N
1054	chr11	61603236	61603237	rs2727270	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2727270-T	0.1209	7E-9	(Cis/trans-18:2, EA)	0.0038	[0.0026-0.005] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61603236	61603237	rs2727270	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	11q12.2	FTH1, INCENP, FADS1, FADS2, SCGB1D1, SCGB2A1, C11orf9, DAGLA, FEN1, RAB3IL, C11orf10, FADS3, SYT7, BEST1, SCGB1D2	rs2727270-T	0.44	3E-21	(Conditioned on rs174547)	0.69	[0.55-0.83] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.1231	[0.089-0.157] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0306	[0.022-0.039] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0763	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0571	[0.041-0.073] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0833	[0.06-0.106] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0863	[0.063-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0803	[0.058-0.102] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0609	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0652	[0.047-0.083] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0609	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.1313	[0.095-0.167] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0505	[0.037-0.064] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0798	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0739	[0.054-0.094] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0763	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0609	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0763	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0596	[0.043-0.076] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0761	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0772	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0793	[0.058-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0615	[0.045-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0679	[0.049-0.087] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0796	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.043	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.1231	[0.089-0.157] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.1052	[0.076-0.134] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0928	[0.067-0.118] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.1862	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.1043	[0.076-0.133] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.1231	[0.089-0.157] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0692	[0.05-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-C	NR	1E-12		0.031	[0.023-0.039] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0422	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-G	NR	1E-12		0.0424	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-T	NR	1E-12		0.0855	[0.062-0.109] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727271-A	NR	1E-12		0.0879	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs2727271-T	NR	5E-8	(CE(22:6;0))	0.1874	[0.12-0.25] unit decrease	Illumina [~ 9300000] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q12.2	FADS2	rs2727271-?	NR	2E-13		0.03693	[0.027-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q12.2	FADS2	rs2727271-?	NR	4E-10		0.03124	[0.021-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2727271-A	0.8789	7E-9	(Cis/trans-18:2, EA)	0.0038	[0.0026-0.005] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61603357	61603358	rs2727271	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs2727271-A	0.89	3E-11	(X-12990--docosapentaenoic acid (n6-DPA))	0.055	[0.039-0.071] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174576-C	0.649957	6E-93		0.0774636	[0.07-0.085] unit increase	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q12.2		rs174576-C	0.649156	2E-25		0.0450287	[0.037-0.054] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174576-C	0.649957	5E-90		0.0763726	[0.069-0.084] unit increase	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q12.2		rs174576-C	0.649954	4E-12		0.0296412	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174576-C	0.649957	4E-95		0.0789331	[0.071-0.086] unit increase	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs174576-C	0.649957	6E-76		0.0773075	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174576-C	0.649957	3E-99		0.0804795	[0.073-0.088] unit increase	NR [11722792] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1674	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0773	[0.058-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0837	[0.063-0.105] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0462	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0473	[0.036-0.059] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	3E-15		0.0808	[0.061-0.101] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	3E-15		0.0448	[0.034-0.056] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0423	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0886	[0.066-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0724	[0.054-0.09] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0618	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1691	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0464	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0525	[0.039-0.066] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1124	[0.084-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	3E-15		0.0692	[0.052-0.086] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0652	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1675	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0772	[0.058-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0519	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0784	[0.059-0.098] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0822	[0.062-0.103] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0453	[0.034-0.057] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0763	[0.057-0.095] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0804	[0.06-0.1] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.0903	[0.068-0.113] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	3E-15		0.0887	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.1122	[0.084-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	3E-15		0.0625	[0.047-0.078] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0628	[0.047-0.078] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1109	[0.083-0.139] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.1139	[0.085-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.1138	[0.085-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.042	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	3E-15		0.0895	[0.067-0.112] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0355	[0.027-0.044] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0768	[0.058-0.096] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0629	[0.047-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	3E-15		0.0607	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	3E-15		0.0866	[0.065-0.108] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	3E-15		0.0799	[0.06-0.1] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0519	[0.039-0.065] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0432	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	3E-15		0.06	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1127	[0.084-0.141] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.089	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0546	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	3E-15		0.0702	[0.053-0.088] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0652	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	3E-15		0.1103	[0.083-0.138] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0965	[0.072-0.121] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0419	[0.032-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0783	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0776	[0.058-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.1137	[0.085-0.142] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.066	[0.05-0.082] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0593	[0.045-0.074] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0616	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0634	[0.048-0.079] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	3E-15		0.0418	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	4E-15		0.0652	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0882	[0.066-0.11] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-A	NR	3E-15		0.0726	[0.055-0.091] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	4E-15		0.0888	[0.067-0.111] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0813	[0.061-0.102] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	3E-15		0.0587	[0.044-0.073] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-G	NR	3E-15		0.0775	[0.058-0.097] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-C	NR	4E-15		0.0809	[0.061-0.101] unit decrease	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174576-T	NR	4E-15		0.1122	[0.084-0.14] unit increase	Illumina [6720657] (imputed)	N
1054	chr11	61603509	61603510	rs174576	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.2	FADS2	rs174576-?		1E-9		0.0215	[0.015-0.028] unit increase	Illumina [31500000] (imputed)	N
1054	chr11	61603509	61603510	rs174576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	11q12.2	NR	rs174576-C	0.603995	3E-16		0.031311	[0.024-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1054	chr11	61603509	61603510	rs174576	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174576-?	NR	7E-10	(XL_HDL_CE)	0.07460438	NR unit decrease	Illumina [609262]	N
1054	chr11	61603509	61603510	rs174576	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174576-?	NR	5E-10	(XL_VLDL_TG)	0.047236897	NR unit increase	Illumina [609262]	N
1054	chr11	61603509	61603510	rs174576	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174576-?	NR	2E-7	(XL_HDL_CE)	0.07643004	NR unit decrease	Illumina [609262]	N
1054	chr11	61603509	61603510	rs174576	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174576-A	NR	1E-30	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with diacyl residue sum C36:4)	0.493266	[0.41-0.57] unit increase	Illumina [up to 9281895] (imputed)	N
1054	chr11	61603509	61603510	rs174576	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	11q12.2	FADS2, C11orf9, C11orf10, FEN1, FADS1	rs174576-A	NR	1E-10		1.1258574	[1.085854143728-1.16733516060197]	Illumina [at least 6195093] (imputed)	N
1054	chr11	61603509	61603510	rs174576	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs174576-A	0.3206	1E-17	(Phosphatidylcholine diacyl C34:2)	0.0305	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1054	chr11	61603509	61603510	rs174576	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174576-A	0.3422	3E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1054	chr11	61603509	61603510	rs174576	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174576-?	NR	2E-10	(PC 34:3)	0.2287973	[0.16-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61604323	61604324	rs117220229	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117220229-T	NR	5E-28		0.0929	[0.076-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604323	61604324	rs117220229	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117220229-A	NR	5E-28		0.1533	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604323	61604324	rs117220229	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs117220229-A	NR	5E-28		0.12	[0.099-0.141] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.0313	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0713	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.0836	[0.061-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0798	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.0692	[0.05-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.0766	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.0703	[0.051-0.089] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0756	[0.055-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	5E-13		0.0604	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.0365	[0.027-0.046] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0788	[0.057-0.1] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0797	[0.058-0.101] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.07	[0.051-0.089] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0427	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0583	[0.042-0.074] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.0727	[0.053-0.092] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.0336	[0.024-0.043] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0795	[0.058-0.101] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0511	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0834	[0.061-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.1045	[0.076-0.133] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0427	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.0429	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.0443	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0645	[0.047-0.082] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	6E-13		0.1873	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	5E-13		0.0603	[0.044-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	5E-13		0.1729	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.059	[0.043-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.0569	[0.041-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.0427	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	6E-13		0.0242	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0523	[0.038-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	5E-13		0.0492	[0.036-0.063] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0772	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0886	[0.064-0.113] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.0427	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	6E-13		0.071	[0.052-0.09] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0443	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-G	NR	5E-13		0.0246	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	6E-13		0.0436	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-T	NR	5E-13		0.0617	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-A	NR	5E-13		0.0623	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2524299-C	NR	5E-13		0.0762	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604781	61604782	rs2524299	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2524299-A	0.8756	7E-9	(Cis/trans-18:2, EA)	0.0037	[0.0025-0.0049] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61604813	61604814	rs174577	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174577-C	0.649261	4E-40		0.0520611	[0.044-0.06] unit increase	NR [11722792] (imputed)	N
1055	chr11	61604813	61604814	rs174577	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174577-C	0.649261	1E-18		0.0350723	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	11q12.2		rs174577-A	0.391574	1E-12		0.0273196	[0.02-0.035] unit increase	Illumina [13477433] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0651	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0413	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0888	[0.066-0.111] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	6E-15		0.1127	[0.084-0.141] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	6E-15		0.167	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	4E-15		0.056	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0741	[0.055-0.093] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.1244	[0.093-0.156] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.2081	[0.16-0.26] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.0864	[0.065-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0686	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.069	[0.052-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0815	[0.061-0.102] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.063	[0.047-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0512	[0.038-0.064] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0582	[0.044-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0513	[0.038-0.064] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.0739	[0.055-0.093] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0481	[0.036-0.06] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0686	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0689	[0.052-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0652	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0681	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0829	[0.062-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0455	[0.034-0.057] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0693	[0.052-0.087] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0793	[0.06-0.099] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0967	[0.073-0.121] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.1122	[0.084-0.14] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.086	[0.064-0.108] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	4E-15		0.0418	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0633	[0.047-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0729	[0.055-0.091] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0683	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0487	[0.037-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.096	[0.072-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0814	[0.061-0.102] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.128	[0.096-0.16] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0724	[0.054-0.09] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.259	[0.19-0.32] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.0559	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.1395	[0.1-0.17] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0622	[0.047-0.078] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	4E-15		0.0519	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	4E-15		0.18	[0.13-0.23] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.1011	[0.076-0.126] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.125	[0.094-0.156] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0711	[0.053-0.089] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.1113	[0.083-0.139] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0585	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	4E-15		0.0648	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0861	[0.065-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0861	[0.065-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.0843	[0.063-0.105] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0559	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0681	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0523	[0.039-0.065] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0487	[0.037-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0545	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0663	[0.05-0.083] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(45:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0651	[0.049-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.06	[0.045-0.075] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	5E-15		0.0423	[0.032-0.053] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	6E-15		0.0629	[0.047-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.073	[0.055-0.091] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0983	[0.074-0.123] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	6E-15		0.043	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0438	[0.033-0.055] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	5E-15		0.0685	[0.051-0.086] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0876	[0.066-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-C	NR	6E-15		0.0684	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	5E-15		0.0463	[0.035-0.058] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-T	NR	4E-15		0.0382	[0.029-0.048] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-A	NR	5E-15		0.0668	[0.05-0.083] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174577-G	NR	6E-15		0.0515	[0.039-0.064] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604813	61604814	rs174577	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	11q12.2	intergenic	rs174577-?	NR	3E-7	(spine area MTAG)	0.175	[NR] unit decrease	Affymetrix [NR]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	7E-83	(DHA_FA)	0.21744592	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	5E-16	(XL_HDL_PL)	0.07365257	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	5E-14	(XL_HDL_P)	0.07986463	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	3E-70	(DHA_FA)	0.215256	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	2E-9	(XL_HDL_PL)	0.073635325	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174577-?	NR	2E-10	(XL_HDL_P)	0.078009084	NR unit decrease	Illumina [609262]	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	NR	4E-49		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	0.656	8E-39	(EA)	0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	0.374	7E-6	(East Asian)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	NR	2E-26		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	0.656	4E-26	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	NR	2E-54		0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	0.656	2E-49	(EA)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	NR	1E-11		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174577-C	0.656	2E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61604813	61604814	rs174577	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	11q12.2	FADS2	rs174577-C	0.6485	5E-7		0.0083	[0.005-0.0116] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1055	chr11	61604813	61604814	rs174577	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	11q12.2	FADS2	rs174577-C	0.5111	8E-6		0.0177	[0.0099-0.0255] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1055	chr11	61604813	61604814	rs174577	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	11q12.2	FADS2, TMEM258	rs174577-?	NR	4E-11	(EA)	0.38	[0.26-0.5] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1055	chr11	61604813	61604814	rs174577	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174577-C	0.3351	4E-68		0.1542	[0.14-0.17] unit increase	Illumina [up to 1980188] (imputed)	N
1055	chr11	61604813	61604814	rs174577	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174577-A	0.3431	4E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61604813	61604814	rs174577	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	11q12.2	FADS2	rs174577-A	0.33	2E-17		0.062	[0.048-0.076] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
1055	chr11	61604813	61604814	rs174577	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	P wave duration	16,468 European ancestry individuals	NA	11q12.2	C11orf9, FADS2	rs174577-A	0.334	3E-8		0.735	[0.48-0.99] unit decrease	Illumina [2300000] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs2072113-C	0.884323	2E-13		0.0439408	[0.032-0.056] unit increase	NR [11722792] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs2072113-C	0.884323	1E-9		0.0367995	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.0817	[0.06-0.103] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	2E-13		0.0866	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.0479	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.1242	[0.091-0.157] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0959	[0.07-0.121] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	2E-13		0.1279	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0479	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.087	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	2E-13		0.1214	[0.089-0.154] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.1077	[0.079-0.136] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	2E-13		0.0828	[0.061-0.105] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	2E-13		0.0866	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0332	[0.024-0.042] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0785	[0.058-0.099] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0786	[0.058-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.1278	[0.094-0.162] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.1281	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0596	[0.044-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.108	[0.079-0.137] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0873	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	2E-13		0.0866	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.0593	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.0869	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.0627	[0.046-0.079] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0647	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0759	[0.056-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	2E-13		0.128	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	2E-13		0.0783	[0.058-0.099] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.119	[0.087-0.151] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.0857	[0.063-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0868	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.0895	[0.066-0.113] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.058	[0.043-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0587	[0.043-0.074] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.0824	[0.061-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.1654	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0723	[0.053-0.092] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	2E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0867	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.0647	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.1077	[0.079-0.136] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-A	NR	1E-13		0.0679	[0.05-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-C	NR	1E-13		0.0514	[0.038-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-G	NR	1E-13		0.1021	[0.075-0.129] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.1243	[0.091-0.157] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072113-T	NR	1E-13		0.1058	[0.078-0.134] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs2072113-T	0.17	4E-55	(D6D)			Illumina [at least 738879] (imputed)	N
1055	chr11	61604966	61604967	rs2072113	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	11q12.2	FADS2	rs2072113-C	0.872052617	4E-6		1.1081095	[1.06-1.16]	Illumina [10439017] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q12.2		rs2072114-A	0.877268	1E-10		0.0402829	[0.028-0.053] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-16		0.186014	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-27		0.241897	[0.2-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-14		0.169824	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-14		0.169646	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-22		0.208705	[0.17-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-11		0.149864	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0872	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.1277	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.077	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.1279	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-16		0.157613	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.1278	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-33		0.188496	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-22		0.150673	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-15		0.125809	[0.094-0.157] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	3E-16		0.159257	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-12		0.110611	[0.08-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0568	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0645	[0.047-0.082] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0577	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0675	[0.049-0.086] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-11		0.0754562	[0.053-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-11		0.113573	[0.081-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0559	[0.041-0.071] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0862	[0.063-0.109] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-33		0.171054	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-27		0.163227	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-58		0.202637	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-15		0.0905504	[0.068-0.113] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-11		0.0845311	[0.059-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-23		0.156353	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	8E-21		0.104765	[0.083-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.100292	[0.074-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	9E-31		0.201023	[0.17-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-29		0.14891	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	9E-12		0.115133	[0.082-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-21		0.159839	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0957559	[0.07-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-17		0.149141	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	8E-11		0.101947	[0.071-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-14		0.131317	[0.098-0.165] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.193	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0701	[0.051-0.089] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-14		0.112258	[0.084-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-21		0.142461	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-16		0.171049	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-11		0.103765	[0.074-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.166449	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	8E-25		0.231523	[0.19-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-17		0.180037	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-48		0.326137	[0.28-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-17		0.182931	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-51		0.340119	[0.3-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-10		0.135811	[0.094-0.177] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-24		0.220169	[0.18-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-20		0.130291	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-12		0.101217	[0.073-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-31		0.204403	[0.17-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-25		0.157665	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	5E-20		0.164004	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-23		0.173185	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-34		0.17691	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-35		0.211534	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-20		0.171069	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	6E-16		0.141931	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-33		0.22198	[0.19-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	3E-12		0.0996892	[0.072-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-10		0.139926	[0.096-0.184] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-11		0.105363	[0.074-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	3E-10		0.137626	[0.095-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	3E-21		0.205068	[0.16-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-23		0.180339	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.1933	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0478	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.1278	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.1643	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0826	[0.061-0.105] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0772	[0.057-0.098] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0538	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0444	[0.033-0.056] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.1278	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0785	[0.058-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.1929	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.1068	[0.078-0.135] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0821	[0.06-0.104] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.1279	[0.094-0.162] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0908	[0.067-0.115] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0894	[0.066-0.113] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0735	[0.054-0.093] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.1277	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0743	[0.055-0.094] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0578	[0.043-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.0769	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0579	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0862	[0.063-0.109] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.0867	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.193	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-110		0.317785	[0.29-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-27		0.185574	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-16		0.144582	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-97		0.361711	[0.33-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-11		0.0873962	[0.062-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-13		0.0865	[0.064-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-16		0.146291	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.0622	[0.046-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-12		0.109698	[0.079-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-T	NR	2E-13		0.1046	[0.077-0.132] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	8E-50		0.173071	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-10		0.0922301	[0.064-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-16		0.123456	[0.094-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	3E-32		0.147964	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	6E-26		0.116248	[0.095-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	7E-26		0.126511	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-13		0.132309	[0.097-0.167] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-57		0.275126	[0.24-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	1E-33		0.183236	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	2E-21		0.148091	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs2072114-G	NR	4E-11		0.0930322	[0.065-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-A	NR	2E-13		0.1278	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2072114-C	NR	2E-13		0.065	[0.048-0.082] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs2072114-G	NR	1E-15	(PC(18:0;0-20:2;0))	0.2895	[0.22-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61605214	61605215	rs2072114	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2072114-A	0.874	3E-9	(Cis/trans-18:2, EA)	0.0037	[0.0025-0.0049] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	5E-24		0.0410495	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	3E-44		0.0587202	[0.05-0.067] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	6E-64		0.0651274	[0.058-0.073] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	3E-19		0.036405	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	3E-22		0.0386759	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	2E-57		0.0619254	[0.054-0.07] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	1E-25		0.0415842	[0.034-0.049] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q12.2		rs174578-T	0.649023	3E-26		0.0418076	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	8E-15		0.0493	[0.037-0.062] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0617	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0629	[0.047-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.164	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.0644	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	6E-15		0.0674	[0.051-0.084] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	7E-15		0.0434	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	8E-15		0.0845	[0.063-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.1852	[0.14-0.23] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.0644	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0748	[0.056-0.094] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0556	[0.041-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0862	[0.064-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0617	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0894	[0.067-0.112] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	7E-15		0.068	[0.051-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	9E-15		0.0365	[0.027-0.046] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.0689	[0.051-0.086] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	7E-15		0.0555	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.0646	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	7E-15		0.112	[0.084-0.14] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0377	[0.028-0.047] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0681	[0.051-0.085] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0555	[0.042-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	7E-15		0.0506	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	8E-15		0.0535	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0763	[0.057-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	7E-15		0.0449	[0.034-0.056] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.1353	[0.1-0.17] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	6E-15		0.0894	[0.067-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	7E-15		0.2563	[0.19-0.32] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.1002	[0.075-0.125] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	8E-15		0.2557	[0.19-0.32] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0766	[0.057-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0611	[0.046-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	7E-15		0.0893	[0.067-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0617	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	9E-15		0.0644	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0644	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	6E-15		0.0562	[0.042-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	6E-15		0.0581	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	6E-15		0.0543	[0.041-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0961	[0.072-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	8E-15		0.0642	[0.048-0.08] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	6E-15		0.1159	[0.087-0.145] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	8E-15		0.1125	[0.084-0.141] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.1994	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0789	[0.059-0.099] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	6E-15		0.0701	[0.052-0.088] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	9E-15		0.071	[0.053-0.089] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0381	[0.028-0.048] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0645	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	8E-15		0.0762	[0.057-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0663	[0.05-0.083] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0447	[0.034-0.056] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	8E-15		0.062	[0.046-0.078] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.054	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0446	[0.033-0.056] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.0578	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	7E-15		0.0658	[0.049-0.082] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0646	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	7E-15		0.1419	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	7E-15		0.0618	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	9E-15		0.052	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-T	NR	9E-15		0.0462	[0.034-0.058] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	7E-15		0.0683	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-A	NR	6E-15		0.0575	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-G	NR	8E-15		0.0455	[0.034-0.057] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174578-C	NR	9E-15		0.0538	[0.04-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605498	61605499	rs174578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q12.2	NR	rs174578-A	0.351324	5E-57		0.030728	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1055	chr11	61605498	61605499	rs174578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174578-A	0.360422	1E-42				Affymetrix, Illumina [24558453] (imputed)	N
1055	chr11	61605498	61605499	rs174578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q12.2	NR	rs174578-A	0.351348	7E-41		0.025849	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1055	chr11	61605498	61605499	rs174578	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174578-A	NR	9E-18	(Phosphatidylcholine with diacyl residue sum C36:1/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.368288	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61605498	61605499	rs174578	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.2	NR	rs174578-T	0.3353	2E-16		0.0475	[0.037-0.058] unit decrease	Illumina [up to 1980188] (imputed)	N
1055	chr11	61605498	61605499	rs174578	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs174578-A	0.3281	2E-43	(Phosphatidylcholine diacyl C40:5)	0.075	[0.064-0.086] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1055	chr11	61605498	61605499	rs174578	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	11q12.2	FADS2, FADS1, FADS3	rs174578-A	0.3267	3E-18	(Phosphatidylcholine diacyl C32:0)	0.0362	[0.028-0.044] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1055	chr11	61605498	61605499	rs174578	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174578-A	0.3447	5E-14	(Cis/trans-18:2, EA)	0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61605498	61605499	rs174578	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174578-A	0.34	6E-42	(1-arachidonoylglycerophosphoethanolamine)	0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1055	chr11	61605498	61605499	rs174578	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174578-A	0.34	3E-24	(1-arachidonoylglycerophosphoinositol)	0.027	[0.021-0.033] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1055	chr11	61605577	61605578	rs75992720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs75992720-C	NR	3E-10		0.0336	[0.023-0.044] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	9E-15		0.0715	[0.053-0.09] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0756	[0.056-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.0613	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0588	[0.044-0.074] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.0537	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	1E-14		0.0786	[0.059-0.099] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0961	[0.072-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0869	[0.065-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0613	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0517	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0517	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.042	[0.031-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0445	[0.033-0.056] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-A	NR	1E-14		0.0967	[0.072-0.121] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	9E-15		0.0553	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0825	[0.062-0.103] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.067	[0.05-0.084] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	9E-15		0.0685	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.047	[0.035-0.059] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	9E-15		0.0435	[0.033-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0576	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	9E-15		0.1515	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	1E-14		0.1554	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.074	[0.055-0.093] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0735	[0.055-0.092] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-A	NR	9E-15		0.0846	[0.063-0.106] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.0869	[0.065-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	1E-14		0.1529	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	1E-14		0.0719	[0.054-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.0555	[0.041-0.07] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.0425	[0.032-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-C	NR	1E-14		0.0419	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-A	NR	1E-14		0.0857	[0.064-0.107] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-T	NR	9E-15		0.0802	[0.06-0.101] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61605612	61605613	rs174579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174579-G	NR	9E-15		0.076	[0.057-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-95		0.0859593	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	1E-64		0.0693779	[0.061-0.077] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-72		0.0759499	[0.068-0.084] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	2E-59		0.0670136	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	6E-77		0.0777961	[0.07-0.086] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	8E-85		0.0791441	[0.071-0.087] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	5E-101		0.0882769	[0.08-0.096] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	1E-14		0.0323226	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	4E-21		0.0392572	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	1E-33		0.0505321	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-61		0.0687229	[0.061-0.077] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	2E-18		0.0369761	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	2E-32		0.0501857	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-48		0.0607249	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	2E-30		0.0474748	[0.039-0.056] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	5E-28		0.0463104	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-29		0.0466679	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q12.2		rs174580-A	0.648065	4E-66		0.0686739	[0.061-0.077] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	6E-46		0.0582209	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	8E-31		0.047979	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	2E-67		0.0716722	[0.064-0.08] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	7E-82		0.0796679	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	3E-58		0.0659823	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174580-A	0.648028	8E-19		0.0373207	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0584	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0867	[0.065-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0847	[0.063-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0664	[0.05-0.083] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0672	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0613	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0551	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.056	[0.042-0.07] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0622	[0.046-0.078] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0792	[0.059-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0651	[0.049-0.082] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0508	[0.038-0.064] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0863	[0.064-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0493	[0.037-0.062] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0595	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0753	[0.056-0.094] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.054	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.059	[0.044-0.074] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0612	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0784	[0.058-0.098] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0495	[0.037-0.062] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.049	[0.037-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0428	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0537	[0.04-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0834	[0.062-0.105] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.1523	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0434	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0453	[0.034-0.057] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0537	[0.04-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0575	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0541	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0673	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0524	[0.039-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0576	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0577	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.1086	[0.081-0.136] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0453	[0.034-0.057] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0487	[0.036-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0684	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0616	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.1113	[0.083-0.14] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0584	[0.044-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0793	[0.059-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0795	[0.059-0.1] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0653	[0.049-0.082] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.1084	[0.081-0.136] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.1102	[0.082-0.138] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0605	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0431	[0.032-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0616	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.061	[0.046-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0835	[0.062-0.105] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0417	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0811	[0.061-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.059	[0.044-0.074] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.042	[0.031-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0577	[0.043-0.072] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0353	[0.026-0.044] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0822	[0.061-0.103] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0667	[0.05-0.084] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-G	NR	1E-14		0.0693	[0.052-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-A	NR	1E-14		0.0672	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0451	[0.034-0.057] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-C	NR	1E-14		0.0682	[0.051-0.085] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0537	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0609	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174580-T	NR	1E-14		0.0503	[0.038-0.063] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606641	61606642	rs174580	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174580-G	NR	5E-8	(PC(18:0;0-18:2;0))	0.1735	[0.11-0.24] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61606641	61606642	rs174580	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174580-G	NR	5E-58	(PC(16:0;0-20:4;0))	0.4999	[0.44-0.56] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61606641	61606642	rs174580	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174580-G	NR	5E-22	(PC(18:1;0-18:2;0))	0.2987	[0.24-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	9E-31	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.486578	[0.41-0.57] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	6E-21	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.399068	[0.32-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	5E-12	(Phosphatidylcholine with acyl-alkyl residue sum C36:4/Sphingomyelin with acyl residue sum C24:0)	0.30041	[0.22-0.38] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	4E-20	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.391712	[0.31-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	2E-28	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.469249	[0.39-0.55] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606641	61606642	rs174580	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174580-G	NR	1E-17	(Phosphatidylcholine with acyl-alkyl residue sum C38:5/Sphingomyelin with acyl residue sum C24:0)	0.372766	[0.29-0.46] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q12.2		rs174581-G	0.648076	4E-81		0.0783724	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.06	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.1465	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0814	[0.061-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0829	[0.062-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0792	[0.059-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0952	[0.071-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0846	[0.063-0.106] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:5)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0597	[0.044-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0539	[0.04-0.068] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0772	[0.058-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0755	[0.056-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.064	[0.048-0.08] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0827	[0.062-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0599	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0771	[0.058-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0437	[0.033-0.055] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0872	[0.065-0.11] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0467	[0.035-0.059] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.11	[0.082-0.138] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0426	[0.032-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0372	[0.028-0.047] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0431	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	1E-14		0.0535	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0449	[0.033-0.056] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0792	[0.059-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0602	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.1101	[0.082-0.138] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0571	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0677	[0.05-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0785	[0.059-0.098] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0804	[0.06-0.101] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.109	[0.081-0.137] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.06	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0785	[0.059-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0941	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0451	[0.034-0.057] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	2E-14		0.11	[0.082-0.138] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	2E-14		0.0588	[0.044-0.074] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0641	[0.048-0.08] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0713	[0.053-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0772	[0.058-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0549	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0817	[0.061-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0644	[0.048-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0718	[0.054-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:3)_[M+H]1+/Phosphatidylethanolamine(38:3)_[M+H]1+/Phosphatidate(40:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.1084	[0.081-0.136] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0404	[0.03-0.051] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0535	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0791	[0.059-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0609	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	1E-14		0.1092	[0.081-0.137] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	2E-14		0.0784	[0.058-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	1E-14		0.0608	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0608	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-A	NR	2E-14		0.0692	[0.052-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-C	NR	2E-14		0.0591	[0.044-0.074] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0534	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0385	[0.029-0.048] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.1514	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	1E-14		0.0656	[0.049-0.082] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	1E-14		0.0502	[0.037-0.063] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-G	NR	2E-14		0.0864	[0.064-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174581-T	NR	2E-14		0.0776	[0.058-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	7E-15	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.330756	[0.25-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	4E-25	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.42572	[0.35-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	4E-15	(Phosphatidylcholine with diacyl residue sum C36:2/Phosphatidylcholine with diacyl residue sum C40:4)	0.337981	[0.25-0.42] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	3E-18	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C36:4)	0.360322	[0.28-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	3E-12	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with diacyl residue sum C40:4)	0.303191	[0.22-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174581-A	NR	1E-15	(Phosphatidylcholine with acyl-alkyl residue sum C34:0/Phosphatidylcholine with acyl-alkyl residue sum C36:2)	0.341664	[0.26-0.42] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61606682	61606683	rs174581	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		11q12.2	FADS1, FADS2, FEN1, MYRF, TMEM258	rs174581-A	NR	1E-8		0.0369337	NR unit decrease	NR [NR] (imputed)	N
1055	chr11	61607106	61607107	rs77020029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs77020029-G	NR	4E-10		0.0744	[0.051-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	2E-14		0.1102	[0.082-0.138] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.1276	[0.095-0.16] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	3E-14		0.0696	[0.052-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	2E-14		0.061	[0.045-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.0763	[0.057-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	3E-14		0.1732	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	3E-14		0.0536	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0941	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.1455	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0607	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.1591	[0.12-0.2] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.1503	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0615	[0.046-0.077] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0598	[0.045-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0763	[0.057-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0775	[0.058-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.0424	[0.032-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.051	[0.038-0.064] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0668	[0.05-0.084] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0505	[0.038-0.063] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.0552	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.064	[0.048-0.08] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0703	[0.052-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0605	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	2E-14		0.0578	[0.043-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0396	[0.029-0.05] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-G	NR	2E-14		0.0958	[0.071-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	2E-14		0.096	[0.072-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.0346	[0.026-0.043] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.073	[0.054-0.092] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0864	[0.064-0.109] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.0703	[0.052-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.0883	[0.066-0.111] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-T	NR	2E-14		0.1438	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-A	NR	2E-14		0.0616	[0.046-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61607167	61607168	rs174582	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174582-C	NR	2E-14		0.1289	[0.096-0.162] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-C	NR	9E-13		0.0411	[0.03-0.052] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0707	[0.051-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0489	[0.036-0.062] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-C	NR	8E-13		0.0662	[0.048-0.084] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0705	[0.051-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	9E-13		0.0766	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	9E-13		0.0784	[0.057-0.1] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0607	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	9E-13		0.0599	[0.043-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0399	[0.029-0.051] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0759	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-C	NR	8E-13		0.0767	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-C	NR	8E-13		0.024	[0.017-0.031] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0712	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0374	[0.027-0.048] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	9E-13		0.047	[0.034-0.06] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0759	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.148	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-A	NR	8E-13		0.0241	[0.017-0.031] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-T	NR	8E-13		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609003	61609004	rs2727265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727265-G	NR	8E-13		0.0759	[0.055-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609322	61609323	rs17156426	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs17156426-G	NR	4E-22		0.122	[0.097-0.147] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609322	61609323	rs17156426	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs17156426-C	NR	4E-22		0.0769	[0.061-0.093] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609447	61609448	rs10897180	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs10897180-G	NR	7E-32		0.118	[0.098-0.138] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609707	61609708	rs11230807	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs11230807-G	NR	5E-30		0.0739	[0.061-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-33		0.191192	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	9E-17		0.131413	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-26		0.165238	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-57		0.245202	[0.22-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-25		0.161203	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-33		0.181569	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-61		0.243284	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-30		0.173254	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-16		0.124859	[0.095-0.155] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.116167	[0.086-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-16		0.12272	[0.093-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.172	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.035	[0.026-0.044] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.2048	[0.15-0.26] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0672	[0.05-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-10		0.0722485	[0.05-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-16		0.0973842	[0.074-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-16		0.0930016	[0.07-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0761	[0.057-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-38		0.169905	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-26		0.126818	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-19		0.120002	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0763	[0.057-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(42:7)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0672	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(35:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0693	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-30		0.114683	[0.095-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-19		0.101966	[0.08-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	9E-24		0.109638	[0.088-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-87		0.215459	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-41		0.142586	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-14		0.101669	[0.075-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-11		0.0696564	[0.049-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-26		0.117998	[0.096-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-38		0.172885	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-31		0.125674	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0536	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(33:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0622	[0.046-0.078] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0425	[0.032-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.1261	[0.094-0.159] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.07	[0.052-0.088] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0536	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0939	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-17		0.0868715	[0.067-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-25		0.0824591	[0.067-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-23		0.114001	[0.091-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0521	[0.039-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.1082	[0.08-0.136] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-12		0.0683775	[0.049-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-77		0.183602	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-60		0.171764	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-144		0.222126	[0.21-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-76		0.145653	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-21		0.0717159	[0.057-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-18		0.0859151	[0.067-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-27		0.0954311	[0.078-0.113] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-57		0.173476	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-50		0.115513	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-32		0.110696	[0.092-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-66		0.206917	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-14		0.0558243	[0.041-0.07] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-22		0.098102	[0.078-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-70		0.16141	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-23		0.116943	[0.094-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-48		0.168056	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-27		0.0963583	[0.079-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-34		0.147073	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-17		0.0975426	[0.075-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-15		0.086908	[0.066-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-29		0.13198	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:6)_[M+H]1+/Phosphatidylcholine-P(35:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0886	[0.066-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0426	[0.032-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0551	[0.041-0.069] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0776	[0.058-0.098] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-20		0.0934033	[0.074-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-22		0.0992489	[0.079-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	9E-49		0.152226	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-33		0.171362	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-25		0.109967	[0.089-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-26		0.165292	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-66		0.266694	[0.24-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-51		0.223214	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-16		0.125462	[0.095-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-113		0.346383	[0.32-0.38] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-59		0.252954	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-25		0.161852	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-31		0.174117	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	9E-125		0.367475	[0.34-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-24		0.0925185	[0.075-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-15		0.116502	[0.088-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-108		0.328974	[0.3-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-33		0.117536	[0.098-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-22		0.0946135	[0.075-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-73		0.2191	[0.2-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-90		0.211724	[0.19-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-40		0.164667	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-21		0.122998	[0.098-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-46		0.17354	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-63		0.167913	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-75		0.21599	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-11		0.05929	[0.042-0.077] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-35		0.157532	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-24		0.108031	[0.087-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-40		0.161053	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-70		0.224043	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-38		0.127527	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-30		0.176732	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-29		0.122879	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-15		0.120494	[0.09-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-36		0.18905	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-52		0.227483	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-13		0.111799	[0.082-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-47		0.182714	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-13		0.0688398	[0.05-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-10		0.0825764	[0.058-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:6)_[M+H]1+/Phosphatidylcholine-P(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.1427	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.069	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0634	[0.047-0.08] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:4)_[M+H]1+/Phosphatidylcholine-P(38:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.094	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.063	[0.047-0.079] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.083	[0.062-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0429	[0.032-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+OAc]1-/Phosphatidylserine(44:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.1426	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0536	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0528	[0.039-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0502	[0.037-0.063] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0701	[0.052-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(39:6)_[M+OAc]1-/Phosphatidylserine(43:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0574	[0.043-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:6)_[M+H]1+/Phosphatidylethanolamine(41:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0535	[0.04-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.071	[0.053-0.089] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0809	[0.06-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.052	[0.039-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.149	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0538	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0562	[0.042-0.071] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0745	[0.055-0.094] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0605	[0.045-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.1493	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0542	[0.04-0.068] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:2)_[M+H]1+/Phosphatidylethanolamine(39:2)_[M+H]1+/Phosphatidate(41:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0424	[0.031-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0933	[0.069-0.117] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0938	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0941	[0.07-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0826	[0.061-0.104] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0532	[0.039-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	5E-11		0.0745451	[0.052-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0959	[0.071-0.121] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0459	[0.034-0.058] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0772	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-272		0.346617	[0.33-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-68		0.205668	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-41		0.162605	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-P_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-10		0.0605329	[0.042-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-17		0.0887161	[0.068-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-18		0.104493	[0.081-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	9E-253		0.404939	[0.38-0.43] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-24		0.0922226	[0.075-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0609	[0.045-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-11		0.0814688	[0.058-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0677	[0.05-0.085] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-40		0.164223	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.1729	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-36		0.136192	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0679	[0.05-0.085] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-116		0.184706	[0.17-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-10		0.0507725	[0.035-0.066] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0758856	[0.056-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-28		0.114892	[0.094-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-70		0.152799	[0.14-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-67		0.132539	[0.12-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-93		0.170225	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-12		0.0765094	[0.055-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-12		0.0773565	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-C	NR	3E-14		0.0464	[0.034-0.058] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	4E-30		0.140254	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	8E-13		0.0768942	[0.056-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	6E-139		0.298179	[0.27-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	7E-33		0.124875	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-39		0.141215	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	3E-14		0.0812041	[0.06-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	1E-23		0.0970432	[0.078-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174583-T	NR	2E-10		0.058956	[0.041-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0536	[0.04-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-G	NR	3E-14		0.0414	[0.031-0.052] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174583-A	NR	3E-14		0.0887	[0.066-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	11q12.2	FADS2	rs174583-T	0.4293	3E-6		0.0202	[0.01-0.03] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
1055	chr11	61609749	61609750	rs174583	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11q12.2	FADS2	rs174583-T	0.3583	3E-22		0.0168	[0.013-0.02] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1055	chr11	61609749	61609750	rs174583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.2	NR	rs174583-T	0.357684	4E-26				Affymetrix, Illumina [19872809] (imputed)	N
1055	chr11	61609749	61609750	rs174583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or fasting glucose levels	28,862 European ancestry cases, 422,048 European ancestry controls, 58,047 European ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	4E-10				Affymetrix [~ 7660000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q12.2	NR	rs174583-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or fasting glucose levels	33,418 European ancestry cases, 393,186 European ancestry controls, 58,047 European ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	4E-17				Affymetrix [~ 7660000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	5E-77	(DHA)	0.19124623	NR unit decrease	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	4E-101	(FAw3)	0.21006793	NR unit decrease	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	2E-14	(XS_VLDL_FC)	0.058744702	NR unit decrease	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	6E-53	(DHA)	0.19145612	NR unit decrease	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	1E-66	(FAw3)	0.21568304	NR unit decrease	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	1E-8	(FAw3_FA)	0.094266154	NR unit increase	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	11q12.2	FADS2	rs174583-?	NR	6E-9	(FAw3_FA)	0.10000426	NR unit increase	Illumina [609262]	N
1055	chr11	61609749	61609750	rs174583	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q12.2	NR	rs174583-?	NR	3E-11		0.02851885	[0.02-0.037] unit increase	Illumina [31978265] (imputed)	N
1055	chr11	61609749	61609750	rs174583	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	11q12.2	NR	rs174583-?	NR	6E-10		2.0433	[1.4-2.69] unit decrease	Illumina [31808917] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174583-T	NR	7E-18	(Phosphatidylcholine with acyl-alkyl residue sum C38:5/Sphingomyelin with acyl residue sum C16:0)	0.361779	[0.28-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	8E-49		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	0.656	2E-38	(EA)	0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	3E-27		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	0.656	1E-25	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	1E-55		0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	0.656	2E-48	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	0.477	9E-6	(Hispanic)	0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	NR	1E-11		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174583-C	0.656	3E-11	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61609749	61609750	rs174583	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174583-T	0.3478	2E-13	(Cis/trans-18:2, EA)	0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	11q12.2	FADS2	rs174583-T	0.344	8E-11		0.57	[0.39-0.75] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	FADS1	rs174583-?	NR	6E-6	(PC 38:3)	0.16372791	[0.093-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61609749	61609750	rs174583	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	11q12.2	C11orf10, C11orf9, FADS1, FADS2, FEN1	rs174583-?	NR	2E-13	(1arachidonoylglycerophosphoethanolamine)	0.03864	[NR] unit decrease	Affymetrix [655658]	N
1055	chr11	61609749	61609750	rs174583	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	11q12.2	FADS1, FADS2, FADS3	rs174583-T	0.34	3E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1055	chr11	61610749	61610750	rs174584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q12.2		rs174584-G	0.64686	3E-34		0.050028	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1055	chr11	61610749	61610750	rs174584	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	11q12.2		rs174584-A	0.322967096	4E-8		0.127334	[0.082-0.173] mmol/l decrease	Illumina [7701709] (imputed)	N
1055	chr11	61610749	61610750	rs174584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or type 2 diabetes	28,862 European ancestry asthma cases, 422,048 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	11q12.2	NR	rs174584-?	NR	4E-11				Affymetrix [up to 8270000] (imputed)	N
1055	chr11	61610749	61610750	rs174584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	11q12.2	NR	rs174584-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1055	chr11	61610749	61610750	rs174584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	11q12.2	NR	rs174584-?	NR	2E-20				Affymetrix [up to 8270000] (imputed)	N
1055	chr11	61610749	61610750	rs174584	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174584-A	NR	3E-15	(LPE(18:2;0))	0.2526	[0.19-0.32] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(58:9)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	7E-13		0.0433	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.1871	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0534	[0.039-0.068] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0426	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0891	[0.065-0.113] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0756	[0.055-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0572	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0426	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0577	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0962	[0.07-0.122] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-A	NR	6E-13		0.0427	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:4)_[M+H]1+/Phosphatidylcholine-P(36:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.2382	[0.17-0.3] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	7E-13		0.0753	[0.055-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:8)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-A	NR	6E-13		0.077	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-A	NR	6E-13		0.1871	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0434	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0771	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:4)_[M+OAc]1-/Phosphatidylserine(44:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	7E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0745	[0.054-0.095] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.077	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.1875	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.1718	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0891	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0607	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(34:2)_[M+H]1+/Phosphatidylethanolamine(37:2)_[M+H]1+/Phosphatidate(39:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	7E-13		0.0762	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.077	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0765	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0574	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	7E-13		0.0769	[0.056-0.098] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-G	NR	6E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-C	NR	6E-13		0.0802	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611215	61611216	rs2526680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2526680-T	NR	6E-13		0.0431	[0.031-0.055] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.089	[0.066-0.112] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0665	[0.049-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-G	NR	4E-14		0.1731	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0585	[0.043-0.074] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0504	[0.037-0.064] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0757	[0.056-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.1266	[0.094-0.159] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0836	[0.062-0.105] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.2032	[0.15-0.26] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.0763	[0.057-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0698	[0.052-0.088] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(42:4)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.0683	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0526	[0.039-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.1088	[0.081-0.137] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.0492	[0.036-0.062] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.1708	[0.13-0.21] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.067	[0.05-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.0685	[0.051-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0844	[0.063-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0577	[0.043-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.122	[0.09-0.154] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0632	[0.047-0.08] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0606	[0.045-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.171	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0716	[0.053-0.09] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-G	NR	4E-14		0.052	[0.038-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0901	[0.067-0.113] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(43:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.1729	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-T	NR	4E-14		0.0699	[0.052-0.088] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-A	NR	4E-14		0.0935	[0.069-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	4E-14		0.0936	[0.069-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611693	61611694	rs174585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174585-C	NR	3E-14		0.0535	[0.04-0.067] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	3E-10		0.127393	[0.088-0.167] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	5E-12		0.274384	[0.2-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	6E-12		0.269796	[0.19-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	2E-12		0.26447	[0.19-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	5E-16		0.203514	[0.15-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	1E-15		0.243437	[0.18-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61611709	61611710	rs117983270	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs117983270-C	NR	1E-10		0.194432	[0.14-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61612559	61612560	rs11601892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs11601892-C	NR	1E-29		0.0744	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61613152	61613153	rs553607093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs553607093-T	0.997807	2E-23		0.443314	[0.36-0.53] unit increase	NR [11722792] (imputed)	N
1055	chr11	61614426	61614427	rs5792239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q12.2	FADS2	rs5792239-C	0.35809	2E-26		0.024800234	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.1833	[0.13-0.23] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.0682	[0.049-0.087] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-T	NR	1E-12		0.0313	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.077	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.0651	[0.047-0.083] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.043	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.063	[0.046-0.08] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0403	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.062	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0608	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.0669	[0.048-0.085] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.072	[0.052-0.092] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0662	[0.048-0.084] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-T	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.0403	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0422	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.0403	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0422	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-C	NR	1E-12		0.0421	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-T	NR	1E-12		0.0608	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-G	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2845572-A	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61614594	61614595	rs2845572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q12.2	NR	rs2845572-A	0.086094	1E-10		0.021726	[0.015-0.028] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	1E-10		0.218185	[0.15-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	2E-15		0.151546	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	2E-13		0.251595	[0.18-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	2E-10		0.20922	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	2E-24		0.21944	[0.18-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	5E-20		0.238787	[0.19-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	3E-11		0.11726	[0.083-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7935946-T	NR	3E-14		0.196832	[0.15-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs7935946-T	NR	6E-15		0.0424	[0.032-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61615541	61615542	rs7935946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs7935946-T	NR	4E-16		0.0463	[0.035-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-T	NR	2E-12		0.0477	[0.034-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.1138	[0.082-0.145] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0769	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.045	[0.032-0.058] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0762	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0386	[0.028-0.049] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.0418	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0685	[0.049-0.088] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:3)_M+H]1+/Phosphatidylcholine-P(36:2)_M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.04	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:6)_[M+H]1+/Phosphatidylethanolamine(43:6)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-T	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+OAc]1-/Phosphatidylserine(44:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.1146	[0.083-0.147] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0418	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0695	[0.05-0.089] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-T	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0478	[0.034-0.061] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0624	[0.045-0.08] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.0751	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0531	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-T	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0386	[0.028-0.049] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.0418	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-C	NR	2E-12		0.0723	[0.052-0.092] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-G	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.0418	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2851682-A	NR	2E-12		0.1854	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61616011	61616012	rs2851682	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	11q12.2	NR	rs2851682-G		8E-6				NR [525577]	N
1055	chr11	61616011	61616012	rs2851682	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2851682-A	0.9123	1E-7	(Cis/trans-18:2, EA)	0.0039	[0.0025-0.0053] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61616976	61616977	rs174590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q12.2	FADS2	rs174590-C	0.218985	1E-15		0.027469032	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-20		0.158542	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-11		0.116713	[0.083-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-17		0.141913	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-32		0.196116	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-15		0.130565	[0.098-0.163] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-20		0.149946	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-35		0.19611	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-17		0.137268	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-11		0.0846755	[0.059-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-22		0.136841	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-16		0.107627	[0.082-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-13		0.104424	[0.076-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-19		0.0970624	[0.076-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-13		0.0881574	[0.064-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-16		0.0957585	[0.073-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-52		0.178974	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-20		0.106565	[0.084-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	7E-13		0.0865145	[0.063-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-23		0.143304	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-18		0.101666	[0.079-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-10		0.0688918	[0.047-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-13		0.0630933	[0.046-0.08] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-11		0.0841579	[0.06-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-44		0.149519	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	7E-35		0.139335	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	7E-81		0.178747	[0.16-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-55		0.133537	[0.12-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-11		0.0552039	[0.039-0.071] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-13		0.0778491	[0.057-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-12		0.0670091	[0.048-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-29		0.131308	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-26		0.0891769	[0.073-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-15		0.0790843	[0.059-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-31		0.152494	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-12		0.0767099	[0.055-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-37		0.124696	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-12		0.08665	[0.062-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-24		0.127306	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-15		0.0760453	[0.057-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-16		0.107027	[0.081-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-14		0.0964794	[0.072-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-16		0.105691	[0.081-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-12		0.0758027	[0.054-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-24		0.113087	[0.091-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-17		0.132339	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-17		0.0952319	[0.073-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-15		0.132636	[0.1-0.166] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-36		0.209469	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-29		0.18018	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-61		0.273466	[0.24-0.31] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-55		0.264787	[0.23-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-30		0.195609	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-18		0.142583	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-73		0.303112	[0.27-0.34] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-22		0.0946246	[0.075-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-79		0.303356	[0.27-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-14		0.0812652	[0.06-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-12		0.0731761	[0.052-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-41		0.175901	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-55		0.178018	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-18		0.116884	[0.091-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-15		0.111099	[0.084-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-24		0.132697	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-28		0.119086	[0.098-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-40		0.168796	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-18		0.119716	[0.093-0.146] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-16		0.0935268	[0.071-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-25		0.135017	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-34		0.167263	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-26		0.111984	[0.091-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-20		0.154979	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-20		0.108287	[0.085-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-25		0.16708	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	7E-29		0.180192	[0.15-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-22		0.132897	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-148		0.275753	[0.25-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	8E-37		0.160983	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-22		0.127064	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-10		0.0830287	[0.058-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-139		0.323749	[0.3-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-12		0.0686803	[0.05-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	3E-19		0.119803	[0.094-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	4E-18		0.100985	[0.078-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-65		0.148744	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-15		0.0686591	[0.052-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	5E-15		0.0887354	[0.067-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-36		0.116657	[0.098-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-38		0.106809	[0.091-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	6E-62		0.149023	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-17		0.113011	[0.087-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	2E-77		0.239049	[0.21-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	9E-18		0.0996427	[0.077-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61617675	61617676	rs174591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174591-A	NR	1E-13		0.0780442	[0.057-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-C	NR	8E-13		0.0244	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine(44:6)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-C	NR	8E-13		0.0312	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-C	NR	8E-13		0.1875	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-G	NR	8E-13		0.0311	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.075	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(40:5)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-G	NR	8E-13		0.0737	[0.054-0.094] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:5)_[M+H]1+/Phosphatidylethanolamine(41:5)_[M+H]1+/Phosphatidate(43:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-G	NR	8E-13		0.0605	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.0781	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.0838	[0.061-0.107] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-A	NR	8E-13		0.0597	[0.043-0.076] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:5)_[M+OAc]1-/Phosphatidylserine(40:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.07	[0.051-0.089] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.0428	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.0811	[0.059-0.103] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-A	NR	8E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.1849	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine(20:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-G	NR	8E-13		0.0312	[0.023-0.04] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-C	NR	8E-13		0.0434	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-T	NR	8E-13		0.0425	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618011	61618012	rs2727263	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs2727263-G	NR	8E-13		0.0689	[0.05-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.1503	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-C	NR	8E-11		0.0794	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-A	NR	8E-11		0.0737	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-A	NR	8E-11		0.0389	[0.027-0.051] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-A	NR	8E-11		0.0795	[0.056-0.103] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-C	NR	8E-11		0.0503	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.0732	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-C	NR	8E-11		0.0976	[0.068-0.127] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.0623	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.0623	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-A	NR	8E-11		0.0378	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+OAc]1-/Phosphatidylserine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.0476	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.153	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-A	NR	8E-11		0.0393	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs61897795-G	NR	8E-11		0.0584	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q12.2	FADS2	rs61897795-G	0.163947	2E-12		0.021099644	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q12.2	FADS2	rs61897795-G	0.163979	2E-38		0.039334226	[0.033-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q12.2	FADS2	rs61897795-G	0.164742	5E-13		0.02862939	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q12.2	FADS2	rs61897795-G	0.16397	7E-11		0.0195271	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q12.2	FADS2	rs61897795-G	0.1643	4E-12		0.03399649	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr11	61618168	61618169	rs61897795	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q12.2	FADS2	rs61897795-G	0.1643	6E-12		0.03356279	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr11	61618607	61618608	rs174592	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large LDL	4,348 individuals	NA	11q12.2		rs174592-G	0.334867295	1E-8		0.131626	[0.087-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
1055	chr11	61618607	61618608	rs174592	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	11q12.2		rs174592-G	0.334906351	2E-9		0.138251	[0.093-0.183] mmol/l decrease	Illumina [7701709] (imputed)	N
1055	chr11	61618607	61618608	rs174592	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q12.2	FADS2	rs174592-A	0.605	1E-13		0.93053	[0.91-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1055	chr11	61618607	61618608	rs174592	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	11q12.2	NR	rs174592-A	0.599	7E-11		0.92506	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1055	chr11	61618607	61618608	rs174592	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q12.2	FADS2, FADS3	rs174592-?		6E-9				NR [6786993] (imputed)	N
1055	chr11	61618607	61618608	rs174592	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174592-G	NR	2E-8	(TAG(56:5;0))	0.176	[0.11-0.24] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61618607	61618608	rs174592	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q12.2	NR	rs174592-G	0.373003	7E-22		0.0308326	[0.025-0.037] unit decrease	NR [19129689] (imputed)	N
1055	chr11	61618607	61618608	rs174592	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174592-G	NR	3E-13	(Phosphatidylcholine with acyl-alkyl residue sum C38:4/Sphingomyelin with acyl residue sum C16:0)	0.311966	[0.23-0.39] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61619828	61619829	rs174594	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of VLDLD particles	4,348 individuals	NA	11q12.2		rs174594-A	0.664298528	6E-9		0.13446	[0.089-0.18] mmol/l decrease	Illumina [7701709] (imputed)	N
1055	chr11	61619828	61619829	rs174594	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of VLDLD particles	4,734 individuals	NA	11q12.2		rs174594-A	0.662096536	8E-11		0.143648	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1055	chr11	61619828	61619829	rs174594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q12.2	FADS2	rs174594-A	0.625305	5E-11		0.015067298	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr11	61619828	61619829	rs174594	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	11q12.2		rs174594-C	0.376	5E-8		0.029	[0.019-0.039] bpm decrease	Affymetrix [9800000] (imputed)	N
1055	chr11	61619828	61619829	rs174594	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	11q12.2		rs174594-C	0.375658	7E-6	(female)	0.0345616	[0.020-0.050] bpm decrease	Affymetrix [9800000] (imputed)	N
1055	chr11	61619828	61619829	rs174594	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.2	FADS2	rs174594-A	0.606	5E-8		0.0179	[0.011-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1055	chr11	61619828	61619829	rs174594	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174594-A	NR	2E-12	(PI(18:0;0-18:2;0))	0.2203	[0.16-0.28] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61619828	61619829	rs174594	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs174594-A	NR	5E-13	(Phosphatidylcholine with acyl-alkyl residue sum C36:2/Phosphatidylcholine with acyl-alkyl residue sum C42:5)	0.301599	[0.22-0.38] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61619828	61619829	rs174594	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	11q12.2	NR	rs174594-A	NR	2E-13		1.134	[1.097-1.172]	Illumina [6774630] (imputed)	N
1055	chr11	61619828	61619829	rs174594	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	11q12.2	FADS2	rs174594-?	NR	4E-9		0.04208	[0.028-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1055	chr11	61619828	61619829	rs174594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q12.2	FADS2	rs174594-A	0.6242	9E-10		0.02313224	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr11	61620273	61620274	rs72643559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q12.2		rs72643559-C	NR	1E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1055	chr11	61620273	61620274	rs72643559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11q12.2		rs72643559-C	0.580092	1E-9		0.0172074	[0.012-0.023] unit increase	Illumina [13479924] (imputed)	N
1055	chr11	61620273	61620274	rs72643559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	11q12.2		rs72643559-C	0.57899	5E-17		0.0312732	[0.024-0.039] unit increase	Illumina [13476599] (imputed)	N
1055	chr11	61620273	61620274	rs72643559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	11q12.2		rs72643559-C	0.578921	2E-9		0.0265196	[0.018-0.035] unit increase	Illumina [13466143] (imputed)	N
1055	chr11	61620621	61620622	rs533304276	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs533304276-G	0.994775	8E-9		0.169767	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1055	chr11	61620703	61620707	rs138194593	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	11q12.2	FADS2	rs138194593-CTCTT	0.63	3E-67	(D6D)			Illumina [at least 738879] (imputed)	N
1055	chr11	61621193	61621194	rs174598	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	11q12.2		rs174598-A	NR	4E-10		0.125	unit decrease	Illumina [NR] (imputed)	N
1055	chr11	61621555	61621556	rs174599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q12.2		rs174599-C	NR	1E-12		0.0633	[0.046-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1055	chr11	61621555	61621556	rs174599	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q12.2	FADS2	rs174599-C	0.374506	3E-11		0.06260511	[0.044-0.081] unit decrease	Affymetrix [7288503] (imputed)	N
1055	chr11	61621555	61621556	rs174599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q12.2		rs174599-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1055	chr11	61622226	61622227	rs174600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11q12.2		rs174600-C	NR	4E-18		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1055	chr11	61622226	61622227	rs174600	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.2	FADS2	rs174600-T	0.504853	7E-12	(1-stearoyl-2-arachidonoyl-GPE (18:0/20:4))	0.169	[0.12-0.22] unit increase	Illumina [13039987] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-33		0.186082	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-17		0.132449	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-26		0.160932	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	8E-56		0.236785	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-24		0.154352	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-31		0.172964	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-57		0.230273	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-28		0.16446	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-12		0.107061	[0.078-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-13		0.11042	[0.081-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-15		0.116792	[0.088-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-14		0.0900038	[0.067-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-14		0.084965	[0.063-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-38		0.165502	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	9E-24		0.1186	[0.095-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine-P_42:1_[M+H]1+/Phosphatidylglycerol-P_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-18		0.111464	[0.086-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-29		0.108697	[0.09-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-18		0.0967464	[0.075-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-21		0.100314	[0.079-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-78		0.19925	[0.18-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-36		0.130995	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-12		0.0933487	[0.067-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-11		0.0700054	[0.05-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-24		0.111248	[0.09-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-38		0.169735	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-28		0.116673	[0.096-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-16		0.0804111	[0.061-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-23		0.0766335	[0.061-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-21		0.106209	[0.084-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	9E-12		0.0651095	[0.046-0.084] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-67		0.166934	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-58		0.164146	[0.14-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-131		0.206742	[0.19-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-68		0.134848	[0.12-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-19		0.0665252	[0.052-0.081] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-16		0.0781845	[0.059-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-25		0.0900618	[0.073-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-50		0.157782	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-45		0.106765	[0.092-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-30		0.104856	[0.087-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-57		0.187668	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-12		0.0515487	[0.037-0.066] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:6_[M-H]1-/Phosphatidylethanolamine-P_40:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-21		0.092989	[0.074-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-62		0.148466	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:6_[M-H]1-/Phosphatidylethanolamine-P_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-22		0.109357	[0.087-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-43		0.155284	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-25		0.09037	[0.073-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-30		0.134579	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-16		0.0921195	[0.07-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:3_[M-H]1-/Phosphatidylethanolamine-P_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-15		0.0826439	[0.062-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-27		0.124464	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_52:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-18		0.0851363	[0.066-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_44:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-20		0.0906444	[0.071-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-41		0.137067	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-32		0.164069	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-24		0.10517	[0.085-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-24		0.153768	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-57		0.241695	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-43		0.199333	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:6_[M+H]1+/Phosphatidylethanolamine_41:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-14		0.116965	[0.087-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-101		0.321633	[0.29-0.35] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-53		0.23616	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	9E-23		0.151212	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-30		0.167707	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-110		0.338594	[0.31-0.37] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-21		0.0845779	[0.067-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:5_[M+H]1+/Phosphatidylethanolamine_39:5_[M+H]1+/Phosphatidate_41:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-16		0.114643	[0.087-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-99		0.307367	[0.28-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-29		0.107762	[0.089-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:5_[M+OAc]1-/Phosphatidylserine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-20		0.0894445	[0.071-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-68		0.206664	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-79		0.193446	[0.17-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-35		0.149915	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-20		0.117031	[0.092-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-40		0.158449	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-56		0.154271	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-69		0.201648	[0.18-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:2_[M+OAc]1-/Phosphatidylserine_37:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-10		0.0548161	[0.038-0.072] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-33		0.148482	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-23		0.103128	[0.083-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-35		0.14703	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-61		0.205092	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-36		0.120724	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-26		0.160885	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-27		0.114519	[0.094-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-13		0.110195	[0.081-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	9E-32		0.172349	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-45		0.205731	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-11		0.0990274	[0.07-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-41		0.166492	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_35:4_[M+OAc]1-/Phosphatidylcholine-P_35:3_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-12		0.0633827	[0.045-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_33:3_[M+H]1+/Phosphatidylcholine-P_33:2_[M+H]1+/Phosphatidylethanolamine-O_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-11		0.0818207	[0.057-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-243		0.319845	[0.3-0.34] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-64		0.194655	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-37		0.149887	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine-O_18:1_[M-H]1-/Lysophosphatidylethanolamine-P_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-16		0.0833746	[0.064-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-16		0.0961433	[0.073-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-222		0.370972	[0.35-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	9E-23		0.0863837	[0.069-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:6)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-11		0.0786291	[0.055-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-37		0.152866	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-29		0.118547	[0.098-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-107		0.172927	[0.16-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(18:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-12		0.0685241	[0.049-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-26		0.109517	[0.089-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-63		0.14234	[0.13-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-62		0.124131	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-83		0.15745	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-10		0.0690308	[0.048-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	3E-27		0.130097	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	7E-14		0.0787229	[0.058-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	6E-129		0.28066	[0.26-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	1E-28		0.113465	[0.093-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	5E-36		0.13163	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-13		0.0765746	[0.056-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	4E-22		0.0919699	[0.073-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_14:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174601-T	NR	2E-10		0.0579615	[0.04-0.076] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61623139	61623140	rs174601	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174601-T	NR	1E-15	(PC(16:0;0-22:4;0))	0.2669	[0.2-0.33] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	NR	5E-41		0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	0.635	5E-34	(EA)	0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	NR	1E-23		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	0.635	8E-23	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	NR	1E-46		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	0.635	6E-42	(EA)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	NR	3E-11		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q12.2	NR	rs174601-C	0.635	5E-11	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1055	chr11	61623139	61623140	rs174601	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Gondoic acid (20:1n-9) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	11q12.2	FADS2, FADS1	rs174601-T	NR	1E-45		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [2200000] (imputed)	N
1055	chr11	61623139	61623140	rs174601	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174601-T	0.3731	3E-13	(Cis/trans-18:2, EA)	0.0034	[0.0024-0.0044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61623139	61623140	rs174601	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	11q12.2	C11orf9, C11orf10, FEN1, FADS1, FADS2, RAB3IL1, DAGLA, BEST1	rs174601-?	0.35	3E-305	(DGLA)	0.591	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
1055	chr11	61623139	61623140	rs174601	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q12.2	FADS1	rs174601-T	0.34	8E-16	(stearidonate (18:4n3))	0.034	[0.026-0.042] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1055	chr11	61623139	61623140	rs174601	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	11q12.2	FADS1, FADS2, C11orf10	rs174601-T	0.35	3E-9		1.7	[0.80-2.60] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1055	chr11	61623792	61623793	rs2526678	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11q12.2		rs2526678-?	0.4177	1E-8		0.949788	[0.933026052254639-0.966850970847483]	Illumina [8919992] (imputed)	N
1055	chr11	61623792	61623793	rs2526678	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	25,705 Japanese ancestry male cases, 82,774 Japanese ancestry male controls	NA	11q12.2		rs2526678-A	0.293196046	2E-8		0.93297774	[0.910507623-0.956002438]	Illumina [8919992] (imputed)	N
1055	chr11	61623792	61623793	rs2526678	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs2526678-A	0.0833	8E-8	(Cis/trans-18:2, EA)	0.0043	[0.0027-0.0059] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61624180	61624181	rs97384	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	11q12.2	FADS2	rs97384-C	NR	4E-13	(Phosphatidylcholine with diacyl residue sum C34:2/Phosphatidylcholine with acyl-alkyl residue sum C42:5)	0.304614	[0.22-0.39] unit decrease	Illumina [up to 9281895] (imputed)	N
1055	chr11	61624180	61624181	rs97384	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	11q12.2	FADS2	rs97384-?	NR	1E-16		0.03637	[0.028-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1055	chr11	61624180	61624181	rs97384	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	11q12.2	FADS2	rs97384-?	NR	2E-13		0.03504	[0.026-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1055	chr11	61624884	61624885	rs526126	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q12.2	NR	rs526126-C	0.81	2E-10		0.0163	[0.011-0.021] unit decrease	NR [NR]	N
1055	chr11	61625996	61625997	rs188700427	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs188700427-A	0.994521	3E-35		0.337893	[0.28-0.39] unit increase	NR [11722792] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-T	NR	4E-14		0.0593	[0.044-0.075] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-T	NR	5E-14		0.1316	[0.097-0.166] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-C	NR	5E-14		0.0525	[0.039-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-C	NR	4E-14		0.0656	[0.049-0.083] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-G	NR	4E-14		0.0757	[0.056-0.095] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-C	NR	4E-14		0.0581	[0.043-0.073] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-T	NR	4E-14		0.0805	[0.06-0.101] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-A	NR	5E-14		0.0573	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-A	NR	5E-14		0.1062	[0.079-0.134] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-C	NR	4E-14		0.1018	[0.075-0.128] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61626920	61626921	rs174605	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174605-G	NR	4E-14		0.1254	[0.093-0.158] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-G	NR	5E-14		0.0532	[0.039-0.067] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-C	NR	5E-14		0.1253	[0.093-0.158] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-C	NR	5E-14		0.055	[0.041-0.069] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-G	NR	5E-14		0.2011	[0.15-0.25] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-A	NR	5E-14		0.0601	[0.044-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-C	NR	5E-14		0.0931	[0.069-0.117] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627320	61627321	rs174607	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174607-C	NR	5E-14		0.0501	[0.037-0.063] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-C	NR	5E-14		0.0604	[0.045-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-T	NR	5E-14		0.0698	[0.052-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-A	NR	5E-14		0.068	[0.05-0.086] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-C	NR	5E-14		0.0456	[0.034-0.058] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-G	NR	5E-14		0.0951	[0.07-0.12] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-A	NR	5E-14		0.1084	[0.08-0.137] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-A	NR	5E-14		0.0758	[0.056-0.096] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-C	NR	5E-14		0.066	[0.049-0.083] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-G	NR	5E-14		0.078	[0.058-0.098] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-A	NR	5E-14		0.0845	[0.063-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627483	61627484	rs174608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174608-T	NR	5E-14		0.1217	[0.09-0.153] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	5E-16		0.122855	[0.093-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-11		0.10047	[0.071-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-23		0.146756	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-10		0.0947744	[0.066-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-12		0.102244	[0.074-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	9E-22		0.134994	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-11		0.099155	[0.071-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-11		0.0748092	[0.053-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-14		0.093713	[0.069-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-11		0.0613625	[0.043-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-30		0.117818	[0.098-0.138] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-13		0.0736767	[0.054-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-15		0.0995783	[0.074-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	7E-11		0.0667037	[0.047-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-11		0.0492163	[0.034-0.064] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-26		0.0992474	[0.081-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	9E-16		0.0797857	[0.06-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-46		0.118061	[0.1-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-30		0.0854995	[0.071-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-11		0.0481815	[0.034-0.062] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-11		0.0557462	[0.039-0.072] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-23		0.1018	[0.082-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-20		0.0675486	[0.053-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-12		0.0620067	[0.044-0.08] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-26		0.121391	[0.099-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-23		0.0861161	[0.069-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-16		0.0904877	[0.069-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-10		0.054241	[0.038-0.071] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-11		0.0763332	[0.054-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-12		0.0790217	[0.057-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-13		0.0708855	[0.052-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-12		0.0933958	[0.067-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	5E-18		0.128459	[0.099-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-14		0.106732	[0.079-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-32		0.173653	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-24		0.152773	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-42		0.201565	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-11		0.0578316	[0.041-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	5E-37		0.181004	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-15		0.074451	[0.056-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-32		0.135608	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-33		0.11932	[0.1-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-13		0.0867398	[0.064-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-18		0.099149	[0.077-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	7E-25		0.0975826	[0.079-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-29		0.124565	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-16		0.0983952	[0.075-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-14		0.0881026	[0.066-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-23		0.118244	[0.095-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	9E-13		0.0667564	[0.048-0.085] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-10		0.0926293	[0.064-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-13		0.106955	[0.079-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	8E-20		0.130181	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	6E-19		0.106719	[0.083-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-92		0.190386	[0.17-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-22		0.1093	[0.087-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-17		0.0973238	[0.075-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	5E-88		0.225184	[0.2-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-15		0.0934479	[0.071-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-15		0.0819458	[0.062-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-51		0.115057	[0.1-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	4E-24		0.0832523	[0.067-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-28		0.079777	[0.066-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-34		0.0964533	[0.081-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-11		0.0779499	[0.055-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	1E-42		0.154407	[0.13-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-14		0.0754291	[0.056-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	3E-12		0.0713672	[0.051-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627810	61627811	rs174609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174609-C	NR	2E-12		0.0652237	[0.047-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-16		0.136642	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-12		0.115058	[0.083-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-27		0.172388	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-11		0.110051	[0.078-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	8E-15		0.122885	[0.092-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	8E-26		0.160876	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-12		0.110935	[0.08-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-G	NR	5E-14		0.1708	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-19		0.123423	[0.097-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-13		0.0764544	[0.056-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-35		0.139975	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-15		0.0860591	[0.065-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	7E-11		0.075153	[0.053-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-19		0.126465	[0.099-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	9E-11		0.0723394	[0.05-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-13		0.0591654	[0.043-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(36:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-A	NR	5E-14		0.0824	[0.061-0.104] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-26		0.108412	[0.088-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-20		0.101037	[0.08-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-49		0.132331	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-40		0.1086	[0.093-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	8E-11		0.0515023	[0.036-0.067] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	6E-12		0.0702259	[0.05-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-13		0.0662378	[0.048-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-23		0.111789	[0.09-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-22		0.077117	[0.061-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	9E-14		0.0726852	[0.054-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-25		0.128804	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-23		0.0930958	[0.075-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-14		0.0901443	[0.067-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-13		0.0686391	[0.05-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-10		0.0794419	[0.055-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:4_[M-H]1-/Phosphatidylethanolamine-P_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	9E-12		0.082397	[0.059-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	6E-14		0.0918205	[0.068-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O(38:4)_[M-H]1-/Phosphatidylcholine-O(35:4)_[M-H]1-/Phosphatidylcholine-P(35:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-T	NR	5E-14		0.0335	[0.025-0.042] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	7E-13		0.0769378	[0.056-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-14		0.113039	[0.084-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-11		0.107786	[0.076-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-24		0.16445	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-17		0.130115	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-42		0.218354	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-31		0.189907	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-15		0.129314	[0.097-0.161] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-12		0.111469	[0.081-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	9E-46		0.228952	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-17		0.0790287	[0.061-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-43		0.213736	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-13		0.0743477	[0.054-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-31		0.144972	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-39		0.142925	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-15		0.100438	[0.075-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-16		0.103876	[0.079-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	6E-26		0.108706	[0.088-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-28		0.134555	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-11		0.0891461	[0.064-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-14		0.095484	[0.071-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-22		0.127588	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	9E-14		0.0759267	[0.056-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	7E-13		0.115105	[0.084-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-12		0.0779774	[0.056-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-17		0.131348	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	8E-20		0.141578	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-14		0.101131	[0.075-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(40:5)_[M+H]1+/Phosphatidylcholine-P(40:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-G	NR	5E-14		0.06	[0.044-0.076] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(38:5)_[M+H]1+/Phosphatidylcholine-P(38:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-14		0.0881	[0.065-0.111] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-G	NR	5E-14		0.0812	[0.06-0.102] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+OAc]1-/Phosphatidylserine(42:3)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-T	NR	5E-14		0.0845	[0.063-0.106] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:4)_[M+H]1+/Phosphatidylethanolamine(41:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-T	NR	5E-14		0.0794	[0.059-0.1] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-G	NR	5E-14		0.0719	[0.053-0.091] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:4)_[M+H]1+/Phosphatidylethanolamine(40:4)_[M+H]1+/Phosphatidate(42:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-14		0.093	[0.069-0.117] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-A	NR	5E-14		0.1707	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-97		0.212593	[0.19-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-28		0.134179	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	1E-16		0.103258	[0.079-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	3E-91		0.249917	[0.23-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-11		0.0626351	[0.044-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-20		0.117222	[0.092-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-18		0.0966176	[0.075-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-54		0.129004	[0.11-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-11		0.0717553	[0.051-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-27		0.0965108	[0.079-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-28		0.0866047	[0.071-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	4E-43		0.11835	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	5E-12		0.0878025	[0.063-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-52		0.187339	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174611-C	NR	2E-13		0.0814565	[0.06-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61627880	61627881	rs174611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs174611-T	NR	5E-14		0.0542	[0.04-0.068] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61629376	61629377	rs113003506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs113003506-G	NR	5E-30		0.1501	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61630103	61630104	rs174621	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	11q12.2	FADS2, FADS1, FADS3	rs174621-G	0.772	1E-8		1.071	[1.046-1.097]	Affymetrix [10894596] (imputed)	N
1055	chr11	61631689	61631690	rs77466626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q12.2		rs77466626-C	0.532681	4E-12		0.0147281	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1055	chr11	61631689	61631690	rs77466626	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q12.2	FADS2	rs77466626-?	NR	2E-15		0.023752553	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
1055	chr11	61632309	61632310	rs12577276	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs12577276-G	NR	1E-12		0.229998	[0.17-0.29] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61632309	61632310	rs12577276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs12577276-G	NR	1E-9		0.0475	[0.032-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61633946	61633947	rs77167250	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs77167250-A	NR	4E-10		0.0669	[0.046-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61634828	61634829	rs113268188	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs113268188-C	NR	6E-30		0.1055	[0.087-0.124] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61635199	61635200	rs17831757	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs17831757-G	NR	6E-14		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61635199	61635200	rs17831757	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs17831757-A	NR	6E-14		0.0514	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61635199	61635200	rs17831757	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs17831757-T	NR	6E-14		0.0598	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61635991	61635992	rs6591663	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs6591663-T	NR	2E-10		0.1053	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61636252	61636253	rs11230816	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs11230816-G	NR	5E-30		0.1005	[0.083-0.118] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61636254	61636255	rs11230817	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs11230817-A	NR	5E-30		0.0733	[0.061-0.086] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61637348	61637349	rs7394459	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7394459-T	NR	3E-10		0.0634	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1055	chr11	61638043	61638044	rs7104849	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7104849-C	NR	2E-10		0.0672	[0.046-0.088] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61638233	61638234	rs10897181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs10897181-G	NR	8E-32		0.1205	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61638233	61638234	rs10897181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs10897181-A	NR	9E-32		0.1496	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61638419	61638420	rs472031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs472031-A	NR	1E-10		0.12552	[0.087-0.164] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61638419	61638420	rs472031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs472031-A	NR	2E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61638952	61638953	rs79479642	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs79479642-T	NR	5E-10		0.0822	[0.056-0.108] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61639487	61639488	rs422249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	11q12.2		rs422249-C	NR	2E-8		0.0591	[0.038-0.08] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1055	chr11	61639487	61639488	rs422249	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs422249-T	0.3218	3E-6	(Cis/trans-18:2, EA)	0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61639572	61639573	rs174448	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q12.2	FADS3	rs174448-?	NR	8E-10	(M_VLDL_PL)	0.05598718	NR unit increase	Illumina [609262]	N
1055	chr11	61639572	61639573	rs174448	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174448-A	0.6472	2E-6	(Cis/trans-18:2, EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61639572	61639573	rs174448	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS3	rs174448-A	NR	3E-60		0.05	[NR] % increase	Affymetrix, Illumina [NR]	N
1055	chr11	61639572	61639573	rs174448	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS3	rs174448-A	NR	4E-25		0.01	[NR] % decrease	Affymetrix, Illumina [NR]	N
1055	chr11	61639572	61639573	rs174448	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	FADS3	rs174448-A	NR	7E-28		0.05	[NR] % increase	Affymetrix, Illumina [NR]	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	5E-11		0.0856391	[0.06-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:4)_[M+H]1+/Phosphatidylethanolamine(39:4)_[M+H]1+/Phosphatidate(41:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7481842-G	NR	3E-10		0.0717	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	3E-18		0.12907	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	7E-21		0.16868	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	2E-11		0.081749	[0.058-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	1E-11		0.121638	[0.086-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7481842-C	NR	6E-13		0.11353	[0.083-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7481842-G	NR	3E-10		0.0505	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.2	NR	rs7481842-T	NR	7E-18		0.0326	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q12.2	NR	rs7481842-T	NR	1E-11		0.0257	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs7481842-T	NR	7E-12		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61639704	61639705	rs7481842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q12.2	NR	rs7481842-T	NR	2E-18		0.0332	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61640197	61640198	rs7482316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q12.2		rs7482316-A	NR	3E-10		0.1025	[0.071-0.134] unit decrease	Illumina [6720657] (imputed)	N
1055	chr11	61640378	61640379	rs174449	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q12.2	NR	rs174449-A	0.6452	8E-7	(Cis/trans-18:2, EA)	0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1055	chr11	61641888	61641889	rs57535397	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs57535397-A	0.3252	2E-9	(SM d18:2/22:0)	0.0786	[0.052-0.105] unit increase	Illumina [~ 47000000] (imputed)	N
1055	chr11	61650925	61650926	rs76996928	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q12.2	MYRF	rs76996928-T	0.3371	1E-10	(SM d18:2/24:0)	0.0988	[0.068-0.129] unit increase	Illumina [~ 47000000] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	5E-11		0.114226	[0.08-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	1E-10		0.198065	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	2E-10		0.196956	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	2E-10		0.162268	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	2E-18		0.173029	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	3E-18		0.208494	[0.16-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs7394871-A	NR	9E-11		0.104492	[0.073-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs7394871-C	NR	4E-12		0.0348	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61652513	61652514	rs7394871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs7394871-C	NR	1E-11		0.0357	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61654091	61654092	rs77980989	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	11q12.2	FADS3	rs77980989-A	0.43	2E-8		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-13		0.121781	[0.089-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-14		0.120817	[0.089-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-12		0.0863757	[0.062-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-18		0.112703	[0.087-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-15		0.099818	[0.075-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-11		0.0938583	[0.066-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-38		0.15388	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-17		0.0966182	[0.074-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-10		0.0768944	[0.053-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-12		0.103158	[0.074-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-10		0.0746481	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-10		0.0544082	[0.038-0.071] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-21		0.101463	[0.08-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	7E-14		0.0849548	[0.063-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-36		0.118978	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-38		0.111044	[0.094-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	6E-11		0.0699102	[0.049-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-22		0.114266	[0.091-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-20		0.0770545	[0.061-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	6E-13		0.0736128	[0.054-0.094] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-22		0.127556	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-18		0.0867096	[0.067-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	7E-15		0.0973909	[0.073-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-10		0.062752	[0.044-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-12		0.0910266	[0.065-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-12		0.0794051	[0.057-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	9E-18		0.145167	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-13		0.118494	[0.087-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	9E-33		0.199941	[0.17-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-30		0.194045	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-16		0.140199	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-10		0.105121	[0.073-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-35		0.210849	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	6E-16		0.0794364	[0.06-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-41		0.219628	[0.19-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	6E-21		0.123126	[0.097-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-34		0.139268	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-12		0.0940341	[0.068-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-16		0.10618	[0.08-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-21		0.103004	[0.082-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-25		0.131609	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-11		0.0905983	[0.064-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-13		0.0969495	[0.071-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-22		0.131998	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-17		0.0890818	[0.068-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-12		0.119709	[0.087-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	2E-10		0.0753003	[0.052-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-15		0.129261	[0.097-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-20		0.149988	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-16		0.113993	[0.087-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-79		0.200787	[0.18-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	5E-23		0.125963	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-12		0.0917343	[0.066-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-72		0.231781	[0.21-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-14		0.0998473	[0.074-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-15		0.0907136	[0.068-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	8E-40		0.115409	[0.098-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	1E-15		0.0750485	[0.057-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	3E-21		0.0782248	[0.062-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-39		0.117832	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-10		0.0831959	[0.057-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs1000778-A	NR	4E-40		0.170831	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	3E-22		0.0263	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	5E-24		0.0274	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	1E-20		0.0254	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	6E-14		0.0214	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	4E-13		0.0197	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	2E-34		0.0347	[0.029-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	4E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	2E-20		0.0253	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q12.2	NR	rs1000778-G	NR	4E-14		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1055	chr11	61655304	61655305	rs1000778	19798445	Hicks AA	2009-10-02	PLoS Genet	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	11q12.2	FADS3	rs1000778-A	0.32	7E-13	(SM 16:1)	0.62	[0.45-0.78] unit decrease	Illumina [318237]	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-15		0.125174	[0.094-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-11		0.101767	[0.072-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-25		0.159546	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:8_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-11		0.101802	[0.072-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-13		0.110304	[0.081-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-22		0.140866	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-11		0.100144	[0.071-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	5E-12		0.0776204	[0.056-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-17		0.099163	[0.076-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-15		0.0902785	[0.068-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:5_[M+H]1+/Phosphatidylglycerol_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	8E-17		0.107633	[0.082-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylserine_40:3_[M+H]1+/Phosphatidylglycerol_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-12		0.0827091	[0.059-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	9E-12		0.0667783	[0.048-0.086] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-11		0.0743083	[0.052-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-44		0.150476	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	7E-22		0.100597	[0.08-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-14		0.0825547	[0.061-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-18		0.116456	[0.09-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O_36:0_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-14		0.0817751	[0.061-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol_35:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-14		0.0586329	[0.043-0.074] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-33		0.116289	[0.097-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-19		0.0934816	[0.073-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-50		0.127462	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	7E-42		0.105558	[0.09-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-13		0.0543891	[0.04-0.069] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-12		0.0690938	[0.05-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_37:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	9E-15		0.0674969	[0.05-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-30		0.121344	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-27		0.0821739	[0.067-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-16		0.0767334	[0.059-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-32		0.14126	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-25		0.0938624	[0.076-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-18		0.100096	[0.078-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:3_[M-H]1-/Phosphatidylethanolamine-P_38:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-16		0.0726814	[0.055-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-13		0.0878956	[0.065-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	7E-16		0.0940222	[0.071-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	5E-17		0.0857624	[0.066-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-14		0.107891	[0.08-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-11		0.070952	[0.05-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+H]1+/Phosphatidylethanolamine_43:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-11		0.104074	[0.074-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-22		0.149846	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-15		0.117338	[0.089-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-43		0.2109	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-26		0.165104	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-12		0.109398	[0.079-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-13		0.110216	[0.081-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-49		0.226526	[0.2-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-15		0.0701062	[0.053-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-43		0.203843	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	9E-16		0.0777041	[0.059-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	9E-29		0.132552	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	9E-39		0.134909	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-16		0.100063	[0.076-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:4_[M+H]1+/Phosphatidylethanolamine_37:4_[M+H]1+/Phosphatidate_39:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	8E-11		0.082448	[0.058-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-20		0.110251	[0.087-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-30		0.11176	[0.092-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-32		0.136601	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-14		0.0955518	[0.071-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-10		0.0664732	[0.046-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-19		0.107682	[0.084-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	5E-31		0.144549	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	6E-18		0.0838891	[0.065-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-12		0.10814	[0.078-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_42:6_[M+OAc]1-/Phosphatidylcholine-P_42:5_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-13		0.0795221	[0.058-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-15		0.11838	[0.089-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-23		0.146259	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-21		0.117947	[0.094-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-104		0.210186	[0.19-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-30		0.133087	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-17		0.100145	[0.077-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_22:6_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-10		0.0743181	[0.051-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-101		0.250847	[0.23-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-14		0.0681342	[0.051-0.085] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	5E-18		0.10499	[0.081-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-18		0.0920225	[0.071-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-57		0.126933	[0.11-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	4E-10		0.064585	[0.044-0.085] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-23		0.0849236	[0.068-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-28		0.083397	[0.069-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-47		0.11873	[0.1-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-14		0.0933929	[0.07-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	2E-55		0.183458	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	3E-16		0.0842114	[0.064-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	1E-13		0.0782002	[0.057-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.2		rs174455-G	NR	5E-12		0.066444	[0.048-0.085] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61656116	61656117	rs174455	31862735	Karsai G	2019-12-20	J Biol Chem	FADS3 is a delta14Z sphingoid base desaturase that contributes to gender differences to the human plasma sphingolipidome.	Sphingolipid d18:1/d18:2 ratio	658 European ancestry individuals	NA	11q12.2	FADS3	rs174455-?	NR	1E-8				NR [2557249] (imputed)	N
1055	chr11	61656116	61656117	rs174455	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.2	FADS3	rs174455-A	0.126	2E-10	(AA)	0.1248	[0.087-0.163] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1055	chr11	61656116	61656117	rs174455	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174455-A	NR	7E-14	(CE(20:5;0))	0.2319	[0.17-0.29] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61656116	61656117	rs174455	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	RAB3IL1	rs174455-?	NR	9E-13	(PC 38:5)	0.26390994	[0.19-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61657607	61657608	rs188880086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.2		rs188880086-C	0.678824	2E-48		0.0744082	[0.064-0.084] unit decrease	NR [11722792] (imputed)	N
1055	chr11	61657925	61657926	rs174464	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.2	RAB3IL1	rs174464-?	NR	4E-11	(PC 36:4)	0.2429651	[0.17-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61658799	61658800	rs174465	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.2	FADS2	rs174465-T	NR	6E-11	(PC(16:1;0-18:2;0))	0.2184	[0.15-0.28] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61663690	61663691	rs174468	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	RAB3IL1	rs174468-A	NR	3E-35		0.04	[NR] % increase	Affymetrix, Illumina [NR]	N
1055	chr11	61663690	61663691	rs174468	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	11q12.2	RAB3IL1	rs174468-A	NR	1E-12		0.01	[NR] % decrease	Affymetrix, Illumina [NR]	N
1055	chr11	61663690	61663691	rs174468	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.2	RAB3IL1	rs174468-A	NR	2E-17		0.05	[NR] % increase	Affymetrix, Illumina [NR]	N
1055	chr11	61664756	61664757	rs17764935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q12.2		rs17764935-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1055	chr11	61666416	61666417	rs185875168	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-hexaose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	11q12.2		rs185875168-?	NR	2E-9				Illumina [1128286]	N
1055	chr11	61669945	61669946	rs3815045	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs3815045-A	NR	2E-12		0.222164	[0.16-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-11		0.103637	[0.073-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-16		0.122634	[0.093-0.152] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-10		0.0937385	[0.065-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-15		0.113872	[0.086-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-22		0.102303	[0.082-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-12		0.071984	[0.052-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	4E-10		0.0818485	[0.056-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-21		0.0910963	[0.072-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-12		0.070735	[0.051-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	5E-29		0.0935963	[0.077-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-18		0.0666793	[0.052-0.082] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	5E-17		0.0876614	[0.067-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	8E-15		0.0579763	[0.043-0.073] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	4E-20		0.106685	[0.084-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-16		0.0716236	[0.054-0.089] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	6E-12		0.0764268	[0.055-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-12		0.0709654	[0.051-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-10		0.0895224	[0.062-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	8E-15		0.117427	[0.088-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	9E-25		0.154042	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-24		0.155152	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-18		0.127618	[0.099-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	9E-11		0.0614023	[0.043-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-21		0.111629	[0.089-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-18		0.0886386	[0.069-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-12		0.0818375	[0.059-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-18		0.0842643	[0.065-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-20		0.105199	[0.083-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	8E-11		0.0797093	[0.056-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-20		0.11371	[0.09-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	4E-12		0.100988	[0.072-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	6E-15		0.0954876	[0.071-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	9E-60		0.154503	[0.14-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-14		0.0859965	[0.064-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	7E-13		0.0836584	[0.061-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-59		0.18764	[0.17-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(22:5)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	2E-10		0.0760757	[0.053-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	3E-35		0.0962821	[0.081-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	4E-17		0.0704969	[0.054-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	6E-20		0.0674077	[0.053-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-20		0.0748747	[0.059-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	6E-11		0.0778844	[0.055-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	4E-33		0.137894	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61670036	61670037	rs174471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174471-T	NR	1E-14		0.0781026	[0.058-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61671155	61671156	rs1151139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q12.3		rs1151139-T	NR	7E-14		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1055	chr11	61671155	61671156	rs1151139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11q12.3		rs1151139-T	0.380394	6E-12		0.0258185	[0.018-0.033] unit increase	Illumina [13476299] (imputed)	N
1055	chr11	61671155	61671156	rs1151139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.3	NR	rs1151139-T	0.208456	3E-13				Affymetrix, Illumina [20825802] (imputed)	N
1055	chr11	61671155	61671156	rs1151139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11q12.3	NR	rs1151139-C	0.623615	9E-11		0.027747	[0.019-0.036] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1055	chr11	61672234	61672235	rs174473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q12.3	RAB3IL1	rs174473-C	0.225014	9E-12		0.018388804	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr11	61674117	61674118	rs174476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.3	FADS3	rs174476-?	NR	7E-9	(PC 38:4)	0.25456426	[0.17-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61674117	61674118	rs174476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.3	FADS3	rs174476-?	NR	6E-6	(CE 20:4)	0.20269732	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61674117	61674118	rs174476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.3	FADS3	rs174476-?	NR	3E-6	(LPC 20:5)	0.20751223	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61677478	61677479	rs666870	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.3	FADS3	rs666870-?	NR	8E-8	(TAG 58:10)	0.23658103	[0.15-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:9_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-10		0.0987092	[0.068-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:10_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-14		0.115059	[0.086-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-15		0.114452	[0.086-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-23		0.104492	[0.084-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	4E-12		0.0711814	[0.051-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-20		0.088249	[0.07-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	1E-11		0.068428	[0.049-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-28		0.0928114	[0.076-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-19		0.0687651	[0.054-0.084] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	4E-17		0.0878654	[0.067-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-15		0.0588289	[0.044-0.073] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	9E-20		0.105586	[0.083-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	1E-15		0.0703334	[0.053-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	9E-12		0.075856	[0.054-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_42:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	8E-12		0.0684016	[0.049-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-10		0.0890463	[0.062-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	7E-14		0.113283	[0.084-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-23		0.14939	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	4E-24		0.15311	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	5E-18		0.12542	[0.097-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:2_[M+OAc]1-/Phosphatidylserine_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-11		0.0629173	[0.044-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-21		0.110658	[0.088-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	8E-20		0.0927119	[0.073-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	4E-13		0.0853848	[0.062-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	7E-19		0.0853779	[0.067-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	4E-21		0.107411	[0.085-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-11		0.0817386	[0.058-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	8E-20		0.111846	[0.088-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	5E-12		0.100437	[0.072-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	7E-15		0.0952735	[0.071-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	1E-57		0.15188	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-13		0.0834298	[0.061-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	3E-13		0.0847438	[0.062-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-57		0.184485	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	9E-34		0.0940915	[0.079-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	1E-17		0.071497	[0.055-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	5E-20		0.0675826	[0.053-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-20		0.0744985	[0.059-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_22:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-10		0.0762041	[0.053-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	2E-32		0.136377	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678575	61678576	rs174478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174478-G	NR	8E-15		0.0786979	[0.059-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	9E-24		0.138289	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	8E-12		0.0916371	[0.065-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_39:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	8E-14		0.0930972	[0.069-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-12		0.0927509	[0.067-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-24		0.111944	[0.09-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	1E-23		0.0998706	[0.08-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	4E-12		0.0947044	[0.068-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-11		0.0653389	[0.046-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	1E-13		0.112352	[0.083-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_40:5_[M-H]1-/Phosphatidylethanolamine-P_40:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	3E-15		0.0906083	[0.068-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_38:5_[M-H]1-/Phosphatidylethanolamine-P_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-10		0.0931791	[0.065-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	1E-14		0.151504	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:4_[M+H]1+/Phosphatidylethanolamine_43:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	8E-11		0.122276	[0.085-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	7E-25		0.200795	[0.16-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	6E-19		0.176678	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	5E-12		0.138176	[0.099-0.177] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	5E-22		0.189663	[0.15-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	1E-21		0.180191	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-14		0.116389	[0.087-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-21		0.125978	[0.1-0.152] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+OAc]1-/Phosphatidylserine_38:1_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	4E-12		0.087644	[0.063-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	9E-14		0.110496	[0.081-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	4E-12		0.110704	[0.079-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	8E-12		0.133692	[0.095-0.172] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-15		0.150924	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:5_[M+H]1+/Phosphatidylcholine-P_38:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	7E-17		0.158044	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-13		0.117266	[0.086-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-55		0.194578	[0.17-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-16		0.122139	[0.093-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	6E-47		0.216389	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-25		0.106036	[0.086-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-11		0.0734546	[0.052-0.095] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	2E-13		0.0709512	[0.052-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	8E-24		0.105331	[0.085-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs174479-G	NR	1E-26		0.160071	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61678753	61678754	rs174479	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	11q12.3	FADS1, FADS2, FADS3	rs174479-?	NR	2E-14	(levels)	0.0	[0.80-1.50] % increase	Illumina [NR] (imputed)	N
1055	chr11	61687453	61687454	rs11230827	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q12.3	NR	rs11230827-?	NR	5E-8		1.10816	[1.07-1.15]	Affymetrix, Illumina [12447948] (imputed)	N
1055	chr11	61689411	61689412	rs149037697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs149037697-G	0.963418	2E-50		0.160764	[0.14-0.18] unit increase	NR [11722792] (imputed)	N
1055	chr11	61693683	61693684	rs11825591	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs11825591-T	NR	4E-12		0.232745	[0.17-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61695145	61695146	rs2524292	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs2524292-G	NR	4E-9	(LPC(20:4;0))	0.3414	[0.23-0.45] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61697657	61697658	rs4963275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q12.3		rs4963275-G	NR	5E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1055	chr11	61697903	61697904	rs6591673	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q12.3	RAB3IL1, BEST1	rs6591673-G	0.67	2E-9		6.01	z-score increase	Affymetrix [4314223] (imputed)	N
1055	chr11	61702466	61702467	rs79972157	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs79972157-G	NR	1E-8	(PC(18:0;0-20:5;0))	0.3927	[0.26-0.53] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61702906	61702907	rs12799580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs12799580-A	0.0403247	4E-16		0.121464	[0.092-0.151] unit increase	NR [11722792] (imputed)	N
1055	chr11	61705206	61705207	rs2158027	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	11q12.3	NR	rs2158027-?	NR	3E-6		0.0195	[0.011-0.028] unit decrease	Illumina [~ 7800000] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	2E-10		0.132019	[0.091-0.173] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	2E-11		0.198958	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:4_[M+H]1+/Phosphatidylethanolamine_40:4_[M+H]1+/Phosphatidate_42:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	4E-11		0.196424	[0.14-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	2E-17		0.159436	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	6E-22		0.218703	[0.17-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	2E-10		0.101192	[0.07-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61705520	61705521	rs2736601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736601-T	NR	4E-13		0.164528	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61706010	61706011	rs2736600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q12.3		rs2736600-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1055	chr11	61710546	61710547	rs74556176	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs74556176-A	NR	3E-8	(PCO(16:0;0-20:4;0))	0.3758	[0.24-0.51] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61710546	61710547	rs74556176	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs74556176-A	NR	4E-11	(PC(18:0;0-20:4;0))	0.4435	[0.31-0.57] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61710871	61710872	rs76368648	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs76368648-T	NR	3E-10	(PC(18:1;0-20:4;0))	0.4882	[0.34-0.64] unit decrease	Illumina [~ 9300000] (imputed)	N
1055	chr11	61711474	61711475	rs2521572	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2521572-T	NR	8E-11		0.146742	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61711474	61711475	rs2521572	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.3	BEST1	rs2521572-T	NR	2E-9		0.05	[NR] % decrease	Affymetrix, Illumina [NR]	N
1055	chr11	61712130	61712131	rs2727261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:5_[M+H]1+/Phosphatidylethanolamine_41:5_[M+H]1+/Phosphatidate_43:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2727261-T	NR	1E-10		0.155987	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61712130	61712131	rs2727261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2727261-T	NR	8E-16		0.122649	[0.093-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61712130	61712131	rs2727261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2727261-T	NR	4E-17		0.155662	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61712130	61712131	rs2727261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2727261-T	NR	6E-12		0.0856819	[0.061-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61712130	61712131	rs2727261	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	11q12.3	FTH1, BEST1	rs2727261-T	0.09	3E-6		0.159	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
1055	chr11	61712241	61712242	rs2727260	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs2727260-T	NR	2E-11	(CE(20:4;0))	0.3273	[0.23-0.42] unit increase	Illumina [~ 9300000] (imputed)	N
1055	chr11	61722211	61722212	rs2736594	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2736594-T	NR	2E-11		0.118571	[0.084-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61722211	61722212	rs2736594	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs2736594-T	NR	5E-11		0.140801	[0.099-0.183] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61722211	61722212	rs2736594	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs2736594-T	NR	1E-12		0.102752	[0.074-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61722644	61722645	rs1109748	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.3	BEST1	rs1109748-A	NR	5E-9		0.05	[NR] % decrease	Affymetrix, Illumina [NR]	N
1055	chr11	61725497	61725498	rs2668898	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q12.3	BEST1	rs2668898-?	NR	3E-6	(LPC 20:4)	0.18122622	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1055	chr11	61726952	61726953	rs148662546	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs148662546-C	0.998768	3E-8		0.322973	[0.21-0.44] unit increase	NR [11722792] (imputed)	N
1055	chr11	61730035	61730036	rs149698	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs149698-A	NR	5E-11		0.0656076	[0.046-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730035	61730036	rs149698	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs149698-A	NR	1E-11		0.0821552	[0.058-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730182	61730183	rs1800008	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs1800008-T	NR	6E-14		0.0679273	[0.05-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730182	61730183	rs1800008	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs1800008-T	NR	5E-11		0.0794841	[0.056-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	4E-11		0.0716928	[0.05-0.093] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	2E-11		0.0530539	[0.038-0.068] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	4E-12		0.103227	[0.074-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	2E-11		0.0708424	[0.05-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	2E-14		0.0752697	[0.056-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	2E-13		0.087592	[0.064-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	7E-12		0.0550856	[0.039-0.071] unit decrease	Affymetrix [87696910] (imputed)	N
1055	chr11	61730233	61730234	rs1800009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs1800009-C	NR	3E-10		0.0520752	[0.036-0.068] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730552	61730553	rs17185413	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs17185413-C	NR	4E-14		0.0672446	[0.05-0.085] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730552	61730553	rs17185413	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs17185413-C	NR	1E-10		0.108475	[0.076-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1055	chr11	61730552	61730553	rs17185413	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs17185413-C	NR	3E-11		0.0788602	[0.056-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	3E-10		0.0496106	[0.034-0.065] unit increase	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	7E-11		0.0971377	[0.068-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	1E-10		0.0677653	[0.047-0.088] unit increase	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:4_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	3E-14		0.0743647	[0.055-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	6E-13		0.0858554	[0.063-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:4)_[M-H]1- levels	13,814 British ancestry individuals	NA	11q12.3		rs10792320-C	NR	3E-11		0.0534219	[0.038-0.069] unit decrease	Affymetrix [87696910] (imputed)	N
1056	chr11	61746290	61746291	rs10792320	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.3	FTH1	rs10792320-A	NR	8E-8		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
1056	chr11	61761228	61761229	rs57280117	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	11q12.3	FTH1, INCENP	rs57280117-A	NR	5E-6		0.0839	[0.048-0.12] unit decrease	NR [NR] (imputed)	N
1056	chr11	61765132	61765133	rs10736716	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	11q12.3	NR	rs10736716-C	NR	4E-6				NR [NR] (imputed)	N
1056	chr11	61765132	61765133	rs10736716	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	11q12.3	FTH1, INCENP	rs10736716-C	NR	3E-6			[NR]	NR [NR] (imputed)	N
1056	chr11	61765132	61765133	rs10736716	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	11q12.3	FTH1, INCENP	rs10736716-C	0.3639	7E-6		0.0825	[0.046-0.119] unit increase	NR [NR] (imputed)	N
1056	chr11	61765132	61765133	rs10736716	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	11q12.3	FTH1, INCENP	rs10736716-C	0.3652	2E-6		0.1312	[0.077-0.185] unit increase	NR [NR] (imputed)	N
1056	chr11	61770302	61770303	rs145379784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs145379784-C	0.974571	9E-25		0.130668	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1056	chr11	61792276	61792277	rs11230873	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	11q12.3	intergenic	rs11230873-A	0.859	2E-7		0.2957	[0.18-0.41] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1056	chr11	61795585	61795586	rs11230874	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.3	FTH1	rs11230874-T	NR	2E-8		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
1056	chr11	61796395	61796396	rs11230876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q12.3		rs11230876-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1056	chr11	61803862	61803863	rs556382879	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs556382879-A	0.992528	1E-9		0.144311	[0.098-0.191] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61803862	61803863	rs556382879	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.3		rs556382879-A	0.992528	2E-8		0.132873	[0.087-0.179] unit increase	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	1E-21		0.106336	[0.085-0.128] unit increase	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	3E-11		0.0738315	[0.052-0.096] unit increase	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	7E-17		0.0934442	[0.071-0.115] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	2E-17		0.0942906	[0.073-0.116] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	7E-16		0.0888161	[0.067-0.11] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61805044	61805045	rs72924290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.3		rs72924290-T	0.964519	3E-24		0.11144	[0.09-0.133] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61809693	61809694	rs12277563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q12.3		rs12277563-C	0.551066	2E-12		0.015836746	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr11	61809693	61809694	rs12277563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q12.3		rs12277563-C	0.551033	1E-9		0.01369825	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1056	chr11	61809693	61809694	rs12277563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q12.3	NR	rs12277563-C	0.550507	2E-12		0.013863	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1056	chr11	61809693	61809694	rs12277563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q12.3		rs12277563-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1056	chr11	61815802	61815803	rs4963452	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	11q12.3	INCENP	rs4963452-T	NR	6E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
1056	chr11	61820725	61820726	rs12280008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs12280008-C	0.860257	4E-19		0.0510658	[0.04-0.062] unit increase	NR [11722792] (imputed)	N
1056	chr11	61830168	61830169	rs387137	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	11q12.3	FADS2	rs387137-C	NR	2E-8	(PC(18:0;0-20:4;0))	0.1916	[0.12-0.26] unit decrease	Illumina [~ 9300000] (imputed)	N
1056	chr11	61840120	61840121	rs527478501	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	11q12.3	intergenic	rs527478501-G	0.006	4E-8		0.14	[0.09-0.19] unit increase	Illumina [NR] (imputed)	N
1056	chr11	61846288	61846289	rs112374025	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q12.3		rs112374025-C	0.982662	3E-9		0.0887655	[0.06-0.118] unit decrease	NR [11722792] (imputed)	N
1056	chr11	61860563	61860564	rs112392078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs112392078-A	0.824422	4E-8		0.0285917	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
1057	chr11	61874840	61874841	rs61895502	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q12.3	intergenic	rs61895502-G	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1057	chr11	61893971	61893972	rs7937840	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q12.3	NR	rs7937840-T	0.2591	1E-6	(EA)	0.035	[0.021-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1057	chr11	61893971	61893972	rs7937840	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	11q12.3	INCENP	rs7937840-T	0.26465	2E-9		0.0446	[0.03-0.059] unit increase	Illumina [NR]	N
1057	chr11	61905128	61905129	rs116956494	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs116956494-C	0.992377	2E-9		0.138878	[0.094-0.184] unit decrease	NR [11722792] (imputed)	N
1057	chr11	61905128	61905129	rs116956494	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs116956494-C	0.992377	7E-10		0.14209	[0.097-0.187] unit increase	NR [11722792] (imputed)	N
1057	chr11	61905128	61905129	rs116956494	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q12.3		rs116956494-C	0.992377	2E-9		0.138724	[0.094-0.184] unit increase	NR [11722792] (imputed)	N
1057	chr11	61905128	61905129	rs116956494	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q12.3		rs116956494-C	0.992377	6E-10		0.141687	[0.097-0.187] unit increase	NR [11722792] (imputed)	N
1057	chr11	61908439	61908440	rs2277283	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q12.3	NR	rs2277283-C	NR	8E-12		1.054	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1057	chr11	61908439	61908440	rs2277283	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q12.3	NR	rs2277283-C	0.317461	1E-9		0.00777761	[0.0053-0.0102] unit increase	Affymetrix [16582621] (imputed)	N
1057	chr11	61908439	61908440	rs2277283	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q12.3	NR	rs2277283-C	0.317461	7E-9		0.008042	[0.0054-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
1057	chr11	61908439	61908440	rs2277283	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q12.3	INCENP	rs2277283-C	0.31	3E-10		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1057	chr11	61939118	61939119	rs10897221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q12.3		rs10897221-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1057	chr11	61963929	61963930	rs189478926	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q12.3	NR	rs189478926-?	NR	5E-9	(Japanese)	0.8474	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1058	chr11	62001413	62001414	rs12806663	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q12.3	NR	rs12806663-C	0.5319	8E-10		0.1369	[0.093-0.181] unit decrease	Illumina [up to 1980188] (imputed)	N
1058	chr11	62061348	62061349	rs11231017	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	11q12.3	SCGB1D4, SCGB2A2	rs11231017-A	0.3111	7E-7	(Xin)	0.7189	unit decrease	Illumina [up to 528294]	N
1058	chr11	62067150	62067151	rs1009052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	SCGB1D4	rs1009052-A	NR	2E-8		0.0160733	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1058	chr11	62067150	62067151	rs1009052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	SCGB1D4	rs1009052-A	NR	9E-9		0.0164495	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1058	chr11	62068579	62068580	rs79893561	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs79893561-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1058	chr11	62083541	62083542	rs953169	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	11q12.3	SCGB1D4	rs953169-G	0.45	3E-6		1.8	[1.41-2.31]	Affymetrix [583535] (imputed)	N
1058	chr11	62103419	62103420	rs2463822	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11q12.3	ASRGL1	rs2463822-T	0.12	1E-10	(CC16)			Illumina [588352]	N
1058	chr11	62104936	62104937	rs2246920	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.3	ASRGL1	rs2246920-T	0.104393	2E-12	(asparagine)	0.269	[0.19-0.34] unit decrease	Illumina [13039987] (imputed)	N
1058	chr11	62104936	62104937	rs2246920	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q12.3	ASRGL1	rs2246920-T	0.104393	2E-12	(asparagine)	0.269	[0.19-0.34] unit decrease	Illumina [13039987] (imputed)	N
1059	chr11	62141690	62141691	rs184485201	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q12.3	NR	rs184485201-?	NR	2E-7	(Japanese)	0.9188	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1059	chr11	62149307	62149308	rs72472161	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	11q12.3		rs72472161-?	NR	7E-6		0.10070417	[0.057-0.144] unit decrease	Illumina [9939936] (imputed)	N
1059	chr11	62153546	62153547	rs562248949	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	11q12.3	ASRGL1	rs562248949-T	0.9958	3E-7		0.6045	[0.37-0.83] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1059	chr11	62153546	62153547	rs562248949	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	11q12.3	ASRGL1	rs562248949-T	0.9959	4E-6		0.5096	[0.29-0.73] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1059	chr11	62160728	62160729	rs1043789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	ASRGL1, CTD-2531D15.5	rs1043789-A	NR	5E-8		0.0164928	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1059	chr11	62166234	62166235	rs7119797	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q12.3	NR	rs7119797-T	0.4891	5E-13		0.013	[0.0095-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1059	chr11	62166324	62166325	rs10792352	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.3	ASRGL1	rs10792352-C	0.29222	1E-9		0.0123784	[0.0084-0.0164] unit decrease	NR [13737936] (imputed)	N
1059	chr11	62174720	62174721	rs3018614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	SCGB1A1	rs3018614-C	NR	2E-8		0.0160458	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62174720	62174721	rs3018614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	SCGB1A1	rs3018614-C	NR	2E-8		0.0161418	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62175012	62175013	rs3017101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	SCGB1A1	rs3017101-A	NR	9E-10		0.0184911	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62175012	62175013	rs3017101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	SCGB1A1	rs3017101-A	NR	4E-10		0.0188443	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62177642	62177643	rs11231084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q12.3	NA	rs11231084-C	0.4943	2E-9		0.0117	[0.0078-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1059	chr11	62179370	62179371	rs2509973	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs2509973-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
1059	chr11	62181881	62181882	rs2958542	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q12.3	SCGB1A1	rs2958542-C	0.632298	2E-8		0.00823945	[0.0054-0.0111] unit increase	Affymetrix [12370749]	N
1059	chr11	62186541	62186542	rs3741240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB3A1	5,360 Icelandic ancestry individuals	NA	11q12.3		rs3741240-A	0.3391	2E-13		0.145313	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1059	chr11	62186541	62186542	rs3741240	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	11q12.3	SCGB1A1	rs3741240-G	0.65	2E-59		0.176	[0.15-0.2] unit increase	Illumina [7312348] (imputed)	N
1059	chr11	62186541	62186542	rs3741240	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11q12.3	SCGB1A1	rs3741240-A	0.36	1E-26	(CC16)			Illumina [588352]	N
1059	chr11	62192930	62192931	rs2509963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs2509963-T	NR	3E-14		0.0245638	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62192930	62192931	rs2509963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs2509963-T	NR	2E-14		0.0248086	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62192930	62192931	rs2509963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs2509963-T	NR	2E-9		0.0202636	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1059	chr11	62192930	62192931	rs2509963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q12.3		rs2509963-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1059	chr11	62193536	62193537	rs1985927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q12.3	CTD-2531D15.4	rs1985927-C	0.742483	8E-11		0.0165337	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1059	chr11	62193536	62193537	rs1985927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q12.3	CTD-2531D15.4	rs1985927-C	0.742496	5E-10		0.015799271	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1059	chr11	62193620	62193621	rs1985926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs1985926-C	NR	1E-10		0.0185202	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62193620	62193621	rs1985926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs1985926-C	NR	9E-11		0.0186278	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62193620	62193621	rs1985926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q12.3	CTD-2531D15.4	rs1985926-C	NR	1E-8		0.0185856	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1059	chr11	62194411	62194412	rs2509957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q12.3	CTD-2531D15.4	rs2509957-C	NR	1E-8		0.018608	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1059	chr11	62194433	62194434	rs74679312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q12.3		rs74679312-G	NR	6E-10		0.0323	[0.022-0.042] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1059	chr11	62194433	62194434	rs74679312	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	11q12.3		rs74679312-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1059	chr11	62194433	62194434	rs74679312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q12.3	CTD-2531D15.4	rs74679312-G	0.057582	3E-9		0.02908948	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1059	chr11	62194433	62194434	rs74679312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q12.3	NR	rs74679312-G	0.0547007	9E-14				Affymetrix, Illumina [23472807] (imputed)	N
1059	chr11	62194433	62194434	rs74679312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q12.3	NR	rs74679312-G	0.056702	2E-13		0.031268	[0.023-0.04] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1059	chr11	62197426	62197427	rs2077224	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11q12.3	AHNAK	rs2077224-A	0.38	2E-14	(CC16)			Illumina [588352]	N
1059	chr11	62199816	62199817	rs17157266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q12.3		rs17157266-C	NR	9E-71		0.0411	[0.037-0.046] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q12.3	NR	rs17157266-C	NR	5E-14		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.3	NR	rs17157266-C	NR	9E-57		0.0494	[0.043-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	11q12.3	NR	rs17157266-C	NR	2E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q12.3	NR	rs17157266-C	NR	2E-13		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	11q12.3	SCGB1A1, AHNAK	rs17157266-?	NR	3E-17		0.03801	[0.029-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1059	chr11	62199816	62199817	rs17157266	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11q12.3	AHNAK	rs17157266-C	0.18	1E-9	(CC16)			Illumina [588352]	N
1059	chr11	62200175	62200176	rs17145884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q12.3		rs17145884-T	NR	9E-16		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1059	chr11	62200175	62200176	rs17145884	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11q12.3	AHNAK	rs17145884-C	0.821082	1E-74		0.0119434	[0.011-0.013] unit increase	Affymetrix [13995440] (imputed)	N
1059	chr11	62200175	62200176	rs17145884	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q12.3	SCGB1A1, AHNAK	rs17145884-C	0.82	8E-12		6.84	z-score increase	Affymetrix [4312306] (imputed)	N
1059	chr11	62200175	62200176	rs17145884	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q12.3	AHNAK	rs17145884-?		1E-17		0.0381	[0.029-0.047] unit increase	Illumina [31500000] (imputed)	N
1059	chr11	62200268	62200269	rs17145892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	11q12.3		rs17145892-T	0.290612	7E-20		0.0348699	[0.027-0.042] unit decrease	Illumina [13476165] (imputed)	N
1059	chr11	62200268	62200269	rs17145892	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q12.3	AHNAK	rs17145892-A	0.821872	2E-18		0.00249081	[0.0019-0.0031] unit increase	Affymetrix [13995440] (imputed)	N
1059	chr11	62200268	62200269	rs17145892	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	11q12.3	AHNAK	rs17145892-T	0.188	3E-7		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
1059	chr11	62200481	62200482	rs145908530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q12.3	NR	rs145908530-A	0.069716	1E-10		0.023436	[0.016-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1059	chr11	62200845	62200846	rs3017106	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q12.3	AHNAK	rs3017106-C	0.309863	3E-8		0.0120618	[0.0078-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
1059	chr11	62201130	62201131	rs2259606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.3	NR	rs2259606-G	NR	2E-14		0.0253	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.3	AHNAK	rs117111740-T	0.9745	2E-96		0.121144	[0.11-0.13] unit increase	NR [13737936] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.3		rs117111740-?	NR	6E-83				NR [~ 8900000] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q12.3		rs117111740-?	NR	1E-77		0.119916	[0.11-0.13] unit increase	Affymetrix [20259828] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.3	AHNAK	rs117111740-T	0.973202	6E-15	(men)	0.126732	[0.095-0.158] unit increase	NR [17166351] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.3	AHNAK	rs117111740-T	0.973054	2E-27		0.115477	[0.095-0.136] unit increase	NR [17166351] (imputed)	N
1059	chr11	62201238	62201239	rs117111740	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q12.3	AHNAK	rs117111740-T	0.972925	1E-15	(women)	0.116484	[0.088-0.145] unit increase	NR [17166351] (imputed)	N
1059	chr11	62201457	62201458	rs4084164	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q12.3	AHNAK	rs4084164-A	0.39412	1E-16		0.00326311	[0.0025-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
1059	chr11	62201457	62201458	rs4084164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q12.3	NR	rs4084164-A	0.392942	5E-10		0.0132695	[0.0091-0.0175] unit increase	NR [NR]	N
1059	chr11	62201585	62201586	rs116846164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q12.3	NR	rs116846164-T	NR	2E-11		0.0537	[0.038-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1059	chr11	62203864	62203865	rs10897275	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11q12.3	AHNAK	rs10897275-G	0.663936	2E-33				Affymetrix, Illumina [NR] (imputed)	N
1059	chr11	62203864	62203865	rs10897275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q12.3		rs10897275-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1059	chr11	62203864	62203865	rs10897275	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q12.3	AHNAK	rs10897275-A	0.3153	7E-23		1.085	NR	Affymetrix [9154080] (imputed)	N
1059	chr11	62214529	62214530	rs55869750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	AHNAK	rs55869750-G	NR	4E-9		0.0347769	[0.023-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62214529	62214530	rs55869750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	AHNAK	rs55869750-G	NR	4E-9		0.0348646	[0.023-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1059	chr11	62216040	62216041	rs2509985	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs2509985-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1059	chr11	62225119	62225120	rs2958540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q12.3	AHNAK	rs2958540-G	0.339881	1E-10		0.015634509	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1059	chr11	62248662	62248663	rs141218484	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11q12.3	Intergenic	rs141218484-T	NR	9E-8	(between families)	5.336	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1060	chr11	62288977	62288978	rs11828907	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	11q12.3	AHNAK	rs11828907-C	NR	2E-7		4.4935546	[2.55-7.92]	Illumina [241551]	N
1060	chr11	62290875	62290876	rs77701059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	AHNAK	rs77701059-A	NR	4E-10		0.0366487	[0.025-0.048] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62290875	62290876	rs77701059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	AHNAK	rs77701059-A	NR	2E-10		0.0371818	[0.026-0.049] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62290875	62290876	rs77701059	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs77701059-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1060	chr11	62310908	62310909	rs2509961	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	11q12.3	AHNAK	rs2509961-C	0.3821	1E-13		0.03	[0.022-0.038] unit increase	Affymetrix [up to 27624732] (imputed)	N
1060	chr11	62311461	62311462	rs2428548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs2428548-?	NR	1E-25				Affymetrix [~ 8270000] (imputed)	N
1060	chr11	62311461	62311462	rs2428548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q12.3	NR	rs2428548-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1060	chr11	62311461	62311462	rs2428548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q12.3		rs2428548-?	NR	4E-26				NR [~ 8900000] (imputed)	N
1060	chr11	62311997	62311998	rs879825380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypertrophic cardiomyopathy	507 European ancestry cases, 489,220 European ancestry controls, 383 East Asian ancestry cases, 177,745 East Asian ancestry controls	NA	11q12.3		rs879825380-T	NR	1E-14		45.3613	[33.81-56.91] unit increase	Affymetrix, Illumina [25845237] (imputed)	N
1060	chr11	62312393	62312394	rs2428549	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q12.3	NR	rs2428549-G	0.37	4E-27		0.021	[0.017-0.025] unit increase	Affymetrix [2446094] (imputed)	N
1060	chr11	62312393	62312394	rs2428549	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q12.3	NR	rs2428549-G	0.37	5E-8				Affymetrix [2446094] (imputed)	N
1060	chr11	62312785	62312786	rs2509967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	AHNAK	rs2509967-G	NR	7E-30		0.0330753	[0.027-0.039] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62312785	62312786	rs2509967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	AHNAK	rs2509967-G	NR	8E-31		0.0336541	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62312785	62312786	rs2509967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q12.3	AHNAK	rs2509967-G	NR	2E-21		0.0279909	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
1060	chr11	62312785	62312786	rs2509967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q12.3	AHNAK	rs2509967-G	NR	7E-25		0.0303181	[0.025-0.036] unit increase	Affymetrix [321169] (imputed)	N
1060	chr11	62312785	62312786	rs2509967	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q12.3	NA	rs2509967-C	0.6337	1E-16		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1060	chr11	62316194	62316195	rs11231138	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q12.3	AHNAK	rs11231138-C	0.62776	3E-14		0.0149781	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1060	chr11	62318529	62318530	rs17773169	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q12.3	AHNAK	rs17773169-C	0.615376	2E-14		0.0145842	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
1060	chr11	62325706	62325707	rs149746592	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	Intergenic	rs149746592-A	0.976	4E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1060	chr11	62325706	62325707	rs149746592	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	Intergenic	rs149746592-A	0.976	1E-6	(AA)	0.262	NR unit increase	Illumina [NR] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-G	0.3517	9E-7	(women)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-G	0.3517	4E-8		0.0253	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-G	0.3517	3E-8	(EA)	0.0266	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11q12.3	EEF1G	rs7943191-G	0.3517	3E-6	(EA)	0.0252	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11q12.3	EEF1G	rs7943191-G	0.3517	3E-6		0.0252	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-?	0.3517	5E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-?	0.3517	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62328550	62328551	rs7943191	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7943191-?	0.3517	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1060	chr11	62334907	62334908	rs1061093	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	11q12.3	INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, MIR3654, TUT1, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, METTL12, SNORA57, C11orf83, UBXN1, LRRN4CL, BSCL2, HNRNPUL2-BSCL2, GNG3, TTC9C, ZBTB3, POLR2G, TAF6L, TMEM179B, TMEM223, NXF1, STX5, WDR74, SNHG1, SNORD22, SNORD31	rs1061093-C	0.347173947735835	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1060	chr11	62334907	62334908	rs1061093	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	11q12.3	SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, MIR3654, TUT1, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, METTL12, SNORA57, C11orf83, UBXN1, LRRN4CL, BSCL2, HNRNPUL2-BSCL2, GNG3, TTC9C, ZBTB3, POLR2G, TAF6L, TMEM179B, TMEM223, NXF1, STX5, WDR74, SNHG1, SNORD22, SNORD31, INCENP, SCGB1D1	rs1061093-C	0.347173947735835	1E-8		0.023226092	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1060	chr11	62338173	62338174	rs188444214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs188444214-G	0.994168	5E-12		0.186705	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
1060	chr11	62338173	62338174	rs188444214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q12.3		rs188444214-G	0.994168	2E-11		0.181951	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
1060	chr11	62345760	62345761	rs117456286	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	11q12.3	TUT1	rs117456286-A	0.013	5E-8	(sCD14)	89.513	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
1060	chr11	62346509	62346510	rs116766958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	TUT1	rs116766958-T	0.978	2E-6	(AA)	0.266	NR unit increase	Illumina [NR] (imputed)	N
1060	chr11	62347030	62347031	rs146799327	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	TUT1	rs146799327-T	0.996	5E-6	(AA)	0.155	unit increase	Illumina [NR] (imputed)	N
1060	chr11	62347030	62347031	rs146799327	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	TUT1	rs146799327-T	0.996	1E-6	(AA)	0.822	NR unit increase	Illumina [NR] (imputed)	N
1060	chr11	62348533	62348534	rs79021925	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs79021925-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1060	chr11	62348533	62348534	rs79021925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q12.3		rs79021925-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1060	chr11	62351690	62351691	rs111394397	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q12.3	TUT1	rs111394397-T	0.979	3E-6	(AA)	0.263	NR unit increase	Illumina [NR] (imputed)	N
1060	chr11	62353005	62353005	rs138014517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q12.3	MIR3654, TUT1	rs138014517-AT	NR	1E-9		0.0266335	[0.018-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1060	chr11	62353005	62353005	rs138014517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q12.3	MIR3654, TUT1	rs138014517-AT	NR	2E-10		0.0276784	[0.019-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1060	chr11	62361036	62361037	rs1058678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	MTA2	rs1058678-C	NR	3E-16		0.0313311	[0.024-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1060	chr11	62361036	62361037	rs1058678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	MTA2	rs1058678-C	NR	3E-16		0.0312277	[0.024-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1060	chr11	62370154	62370155	rs71490394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	11q12.3	EML3	rs71490394-A	0.3671	2E-7		0.0135	[0.0084-0.0186] unit increase	Affymetrix [19819130] (imputed)	N
1060	chr11	62370154	62370155	rs71490394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11q12.3	EML3	rs71490394-A	0.3671	4E-21		0.0231	[0.018-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1060	chr11	62370154	62370155	rs71490394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11q12.3	EML3	rs71490394-A	0.3671	2E-27		0.0264	[0.022-0.031] unit increase	Affymetrix [19819130] (imputed)	N
1060	chr11	62377358	62377359	rs67308910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	EML3	rs67308910-A	NR	2E-19		0.0279502	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62377358	62377359	rs67308910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	EML3	rs67308910-A	NR	3E-20		0.0286529	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
1060	chr11	62377358	62377359	rs67308910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q12.3	EML3	rs67308910-A	NR	5E-11		0.0205514	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1060	chr11	62377358	62377359	rs67308910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q12.3	EML3	rs67308910-A	NR	6E-14		0.0235601	[0.017-0.03] unit increase	Affymetrix [321169] (imputed)	N
1060	chr11	62378220	62378221	rs11231161	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q12.3	EML3	rs11231161-A	0.628831	9E-16		0.0165089	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1060	chr11	62378220	62378221	rs11231161	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q12.3	NR	rs11231161-A	0.628342	4E-9		0.0118256	[0.0079-0.0158] unit increase	NR [NR]	N
1060	chr11	62378659	62378660	rs12808829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q12.3	EML3	rs12808829-A	NR	2E-9		0.0191755	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1060	chr11	62380026	62380027	rs113222038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	11q12.3		rs113222038-C	0.72	4E-9		0.013	mmol/L decrease	NR [NR] (imputed)	N
1060	chr11	62380026	62380027	rs113222038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q12.3		rs113222038-C	0.72	2E-19				NR [NR] (imputed)	N
1060	chr11	62380026	62380027	rs113222038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11q12.3		rs113222038-C	0.72	1E-7		0.011	mmol/L increase	NR [NR] (imputed)	N
1060	chr11	62380026	62380027	rs113222038	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q12.3		rs113222038-C	0.72	3E-12		0.011	% increase	NR [NR] (imputed)	N
1060	chr11	62380731	62380732	rs4387351	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	11q12.3	ROM1	rs4387351-T	0.063	1E-6	(women)	0.326	[0.2-0.45] mg/dL increase	Illumina [622468]	N
1060	chr11	62381807	62381808	rs1801144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q12.3		rs1801144-?	NR	4E-30				NR [~ 8900000] (imputed)	N
1060	chr11	62383714	62383715	rs12794886	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q12.3	B3GAT3	rs12794886-C	0.707	8E-63	(Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, B3GAT3.6897.38.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
1060	chr11	62385367	62385368	rs7122950	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q12.3	B3GAT3	rs7122950-T	0.2886	8E-10		0.0129	[0.0088-0.017] unit increase	Affymetrix [18391927] (imputed)	N
1061	chr11	62394880	62394881	rs7949030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7949030-G	0.38260000000000005	5E-8	(EA, women)	0.0324	[0.021-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1061	chr11	62394880	62394881	rs7949030	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q12.3	EEF1G	rs7949030-?	0.38260000000000005	8E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1061	chr11	62406161	62406162	rs2956993	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	11q12.3	GANAB, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, MIR3654, TUT1, EML3, ROM1, B3GAT3, INTS5, C11orf48, MTA2, BSCL2, C11orf83, UBXN1, LRRN4CL, GNG3, TTC9C, ZBTB3, POLR2G, TMEM179B, SNORD22	rs2956993-G	0.38	5E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1061	chr11	62406161	62406162	rs2956993	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	11q12.3	GANAB, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, MIR3654, TUT1, EML3, ROM1, B3GAT3, INTS5, C11orf48, MTA2, BSCL2, C11orf83, UBXN1, LRRN4CL, GNG3	rs2956993-G	0.38	2E-6		0.024	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1061	chr11	62407482	62407483	rs9736354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	GANAB	rs9736354-A	NR	1E-16		0.0251733	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1061	chr11	62407482	62407483	rs9736354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	GANAB	rs9736354-A	NR	4E-17		0.025492	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1061	chr11	62407482	62407483	rs9736354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q12.3	GANAB	rs9736354-A	NR	2E-10		0.0195751	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1061	chr11	62407482	62407483	rs9736354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q12.3	GANAB	rs9736354-A	NR	2E-11		0.0205723	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
1061	chr11	62413661	62413662	rs78278641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q12.3	GANAB	rs78278641-T	NR	5E-8		0.0232284	[0.015-0.032] unit increase	Affymetrix [321788] (imputed)	N
1061	chr11	62413672	62413673	rs118093058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q12.3		rs118093058-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1061	chr11	62413672	62413673	rs118093058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q12.3	Intergenic	rs118093058-T	0.1327	1E-11	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr11	62413672	62413673	rs118093058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q12.3		rs118093058-T	0.133	4E-12		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1061	chr11	62413672	62413673	rs118093058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q12.3	Intergenic	rs118093058-T	0.133	4E-15	(MTAG)	0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr11	62413672	62413673	rs118093058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q12.3	Intergenic	rs118093058-T	0.1388	7E-10	(MTAG)	0.0205	[0.014-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr11	62421759	62421760	rs76300755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	RP11-831H9.11	rs76300755-G	NR	3E-12		0.0331773	[0.024-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1061	chr11	62421759	62421760	rs76300755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	RP11-831H9.11	rs76300755-G	NR	9E-12		0.0324978	[0.023-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1061	chr11	62423855	62423856	rs10792355	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GAT3	5,351 Icelandic ancestry individuals	NA	11q12.3		rs10792355-C	0.3315	1E-155		0.474618	[0.44-0.51] unit decrease	Illumina [7506463] (imputed)	N
1061	chr11	62424095	62424096	rs1893458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	RP11-831H9.11	rs1893458-C	NR	2E-9		0.017783	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1061	chr11	62424095	62424096	rs1893458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	RP11-831H9.11	rs1893458-C	NR	1E-9		0.0180183	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1061	chr11	62430334	62430335	rs7386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q12.3	C11orf48	rs7386-A	0.447154	6E-10		0.0138681	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1061	chr11	62430334	62430335	rs7386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q12.3		rs7386-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1061	chr11	62436999	62437000	rs12291465	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA2	5,365 Icelandic ancestry individuals	NA	11q12.3		rs12291465-T	0.3314	3E-91		0.382165	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
1061	chr11	62438818	62438819	rs693698	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.3	NR	rs693698-T	0.66375	2E-86	(B3GAT3, 6897_38_3)	0.499049	[0.45-0.55] unit increase	Illumina [> 1000000] (imputed)	N
1061	chr11	62438818	62438819	rs693698	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q12.3	NR	rs693698-T	0.66375	2E-49	(APOA2, 7127_3_3)	0.37738085	[0.33-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1061	chr11	62443085	62443086	rs12364753	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	11q12.3	NR	rs12364753-A	0.3	3E-8		0.26	[0.16-0.36] unit decrease	Affymetrix [19941912] (imputed)	N
1061	chr11	62461228	62461229	rs575134	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	11q12.3	BSCL2	rs575134-?	NR	6E-6	(Hispanic)			Illumina [936149]	N
1061	chr11	62463944	62463945	rs1294350810	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q12.3	NR	rs1294350810-A	0.01045	1E-8	(TXNL1)	0.06177	NR unit increase	Illumina [1671387] (imputed)	N
1061	chr11	62473547	62473548	rs56135662	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q12.3	NR	rs56135662-T	0.223	8E-9		0.00747502	[0.0049-0.01] unit decrease	NR [9732723] (imputed)	N
1061	chr11	62512749	62512750	rs7929194	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q12.3	NR	rs7929194-?	NR	6E-7				Affymetrix [NR]	N
1062	chr11	62546054	62546055	rs148901342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs148901342-G	0.994379	7E-9		0.159055	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
1062	chr11	62601936	62601937	rs528742592	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q12.3		rs528742592-C	0.97032	4E-8		0.0812546	[0.052-0.11] unit increase	NR [11722792] (imputed)	N
1062	chr11	62603911	62603912	rs527481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	WDR74	rs527481-A	NR	4E-8		0.0171426	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1062	chr11	62603911	62603912	rs527481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	WDR74	rs527481-A	NR	5E-8		0.0170985	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1063	chr11	62654683	62654684	rs144453006	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	11q12.3	SLC3A2	rs144453006-G	NR	1E-6		0.946	[0.57-1.32] unit decrease	Illumina [27700000] (imputed)	N
1063	chr11	62656315	62656316	rs6932	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRKCSH	5,358 Icelandic ancestry individuals	NA	11q12.3		rs6932-G	0.01459	9E-13		0.540364	[0.39-0.69] unit increase	Illumina [7506463] (imputed)	N
1063	chr11	62659155	62659156	rs143846972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q12.3	SLC3A2	rs143846972-A	NR	1E-9		0.0466326	[0.032-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1063	chr11	62659155	62659156	rs143846972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q12.3	SLC3A2	rs143846972-A	NR	2E-9		0.0464956	[0.031-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1063	chr11	62659155	62659156	rs143846972	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q12.3	NR	rs143846972-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1063	chr11	62661550	62661551	rs12295992	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs12295992-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62662062	62662063	rs73487887	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs73487887-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62662301	62662302	rs67487724	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs67487724-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62663507	62663508	rs12279355	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs12279355-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62664080	62664081	rs72929497	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs72929497-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62667769	62667770	rs72931310	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs72931310-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62667786	62667787	rs66896469	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	11q12.3		rs66896469-?	NR	5E-6				Illumina [4711309] (imputed)	N
1063	chr11	62675062	62675063	rs58520479	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C4 levels	3,247 European ancestry individuals, 600 African ancestry individuals, 151 East Asian ancestry individuals	NA	11q12.3	NR	rs58520479-G	NR	1E-6		0.18	[0.12-0.23] unit increase	NR [NR] (imputed)	N
1063	chr11	62683865	62683866	rs78526584	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.3	CHRM1	rs78526584-A	0.0916	9E-27	(East Asian)	0.1305	[0.11-0.15] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1063	chr11	62685229	62685230	rs544978	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q12.3	NA	rs544978-A	0.7101	1E-9	(Female)	1.051	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1063	chr11	62697812	62697813	rs4592425	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q12.3	NR	rs4592425-T	0.6965	4E-10		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1063	chr11	62732351	62732352	rs148838714	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.3	SLC22A6	rs148838714-A	0.0655	2E-16		0.0744	[0.057-0.092] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1063	chr11	62732351	62732352	rs148838714	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q12.3	NR	rs148838714-A	0.0733	2E-12	(men)	0.0929	[0.067-0.119] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1063	chr11	62732351	62732352	rs148838714	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q12.3	NR	rs148838714-A	0.0676	9E-9	(women)	0.0727	[0.048-0.098] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1063	chr11	62732592	62732593	rs10897308	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (headache)	1,758 Japanese ancestry female cases, 3,976 Japanese ancestry female controls	1,763 Japanese ancestry female cases, 3,851 Japanese ancestry female controls	11q12.3	NR	rs10897308-A	0.424588226	6E-7		0.14750205	[0.09-0.205] unit decrease	Affymetrix [536506]	N
1063	chr11	62771387	62771388	rs11231299	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11q12.3	SLC22A8	rs11231299-A	0.20	5E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1063	chr11	62783149	62783150	rs4963227	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	11q12.3	NR	rs4963227-C		8E-6		0.2031	[0.11-0.29] SD units increase	NR [10700000] (imputed)	N
1064	chr11	62803101	62803102	rs17713514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11q12.3	NR	rs17713514-T	NR	6E-20		0.0463	[0.036-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1064	chr11	62803101	62803102	rs17713514	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q12.3	SLC22A10	rs17713514-T	0.05	2E-11	(pregnanediol-3-glucuronide)	0.635	[0.45-0.82] unit decrease	Illumina [7750367] (imputed)	N
1064	chr11	62825316	62825317	rs78176967	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q12.3	SLC22A8, SLC22A24	rs78176967-T	0.0311659	5E-39	(etiocholanolone glucuronide)	0.79	[0.67-0.91] unit increase	Illumina [13039987] (imputed)	N
1064	chr11	62840007	62840008	rs144617947	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q12.3	SLC22A8, SLC22A24	rs144617947-A		1E-8		0.526	[0.35-0.71] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1064	chr11	62852422	62852423	rs118186763	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q12.3	SLC22A10	rs118186763-A	0.06	4E-53	(17alpha-hydroxypregnanolone glucuronide)	1.987	[1.73-2.24] unit decrease	Illumina [7750367] (imputed)	N
1064	chr11	62887418	62887418	rs143088266	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q12.3	NR	rs143088266-TCGC	0.066859	1E-25		0.0271874	[0.022-0.032] unit increase	Affymetrix [16578495] (imputed)	N
1064	chr11	62899581	62899582	rs118072533	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q12.3	SLC22A10	rs118072533-T	0.06	3E-43	(X - 22834)	2.583	[2.22-2.95] unit decrease	Illumina [7750367] (imputed)	N
1064	chr11	62905114	62905115	rs113172275	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q12.3	NR	rs113172275-C	0.06613400000000003	1E-22		0.0491508	[0.039-0.059] unit increase	Affymetrix [16585745] (imputed)	N
1064	chr11	62910848	62910849	rs1939749	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	11q12.3		rs1939749-C	0.587	5E-6		0.11	[0.04-0.31]	Illumina [243345]	N
1064	chr11	62912853	62912854	rs4366490	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	11q12.3	SLC22A24	rs4366490-?		1E-6	(EA, Maternal)	1.7	[1.36-2.12]	Illumina [2421290] (imputed)	N
1064	chr11	62914201	62914202	rs1939769	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q12.3	NR	rs1939769-A	0.0664115	1E-51		0.0833288	[0.072-0.094] unit increase	Affymetrix [16580851] (imputed)	N
1065	chr11	62915345	62915346	rs112295236	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q12.3	NR	rs112295236-G	0.06363300000000005	2E-14		0.0313604	[0.023-0.039] unit increase	Affymetrix [16583148] (imputed)	N
1065	chr11	62915345	62915346	rs112295236	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	11q12.3	SLC22A9	rs112295236-G	0.062	8E-12	(Progesterone)	0.255	[NR] unit increase	Illumina [7879351] (imputed)	N
1065	chr11	62934660	62934661	rs141967588	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	11q12.3	NR	rs141967588-TG	NR	3E-6		0.0966	[0.056-0.137] SD units increase	NR [10700000] (imputed)	N
1065	chr11	63019140	63019141	rs1193773	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels in 22q.11.2 deletion syndrome	913 cases, 559 controls	NA	11q12.3		rs1193773-?	NR	9E-6				Affymetrix [3311160] (imputed)	N
1065	chr11	63040637	63040638	rs111806580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11q12.3	NR	rs111806580-A	NR	1E-15		0.0431	[0.033-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1065	chr11	63040948	63040949	rs143289410	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q12.3	SLC22A25, SLC22A10	rs143289410-A	0.01409	4E-12		0.4945	[0.35-0.63] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1066	chr11	63168014	63168015	rs12282281	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Thyroxine levels	1,121 Croatian ancestry individuals	NA	11q12.3	SLC22A9	rs12282281-G	NR	4E-7		0.88	[0.55-1.21] nmol/L decrease	NR [7597900] (imputed)	N
1066	chr11	63173683	63173684	rs7101446	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	11q12.3	SLC22A9	rs7101446-T	NR	3E-6	(Economic policy)	0.145	[0.084-0.206] unit decrease	Illumina [628922]	N
1067	chr11	63224141	63224142	rs11822642	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine/thyroxine ratio	623 Croatian ancestry individuals	NA	11q12.3	intergenic	rs11822642-T	NR	3E-8		0.83	[0.54-1.12] nmol/L increase	NR [8752746] (imputed)	N
1067	chr11	63256319	63256320	rs72930155	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q12.3	HRASLS5	rs72930155-T		1E-11		0.6688	[0.48-0.86] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1067	chr11	63281593	63281594	rs933186	30363675	Cha EDK	2018-09-27	J Obes	Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.	Visceral adipose tissue	2,545 European ancestry individuals	NA	11q12.3	NR	rs933186-?	NR	1E-7		2508.19	[1581.11-3435.27] unit increase	Illumina [629675]	N
1068	chr11	63319992	63319993	rs143825439	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.3	HRASLS2	rs143825439-T	0.0637	2E-101	(East Asian)	0.2991	[0.27-0.33] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1068	chr11	63319992	63319993	rs143825439	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q12.3	HRASLS2	rs143825439-T	0.0543	1E-76		0.2237	[0.2-0.25] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1068	chr11	63319992	63319993	rs143825439	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q12.3	NR	rs143825439-T	0.0566	1E-53	(men)	0.2644	[0.23-0.3] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1068	chr11	63319992	63319993	rs143825439	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q12.3	NR	rs143825439-T	0.0554	4E-36	(women)	0.2168	[0.18-0.25] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1068	chr11	63319992	63319993	rs143825439	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q12.3	NR	rs143825439-?	NR	3E-146		0.2546	[0.24-0.27] unit decrease novel	Illumina [6108953] (imputed)	N
1069	chr11	63474753	63474754	rs76437931	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q13.1	Intergenic	rs76437931-?		5E-6		1.29	[1.16-1.43]	Illumina [7645193] (imputed)	N
1070	chr11	63581513	63581514	rs36077346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.1		rs36077346-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1070	chr11	63587312	63587313	rs503341	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11q13.1	NR	rs503341-T	0.4445	5E-6		0.198	mmHg increase	Illumina [242296]	N
1070	chr11	63587312	63587313	rs503341	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	11q13.1	NR	rs503341-T	0.530187047464774	6E-7		0.18780608	[0.11-0.26] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1070	chr11	63592620	63592621	rs10897449	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	11q13.1	C11orf84	rs10897449-T	0.453	7E-6		0.099	[NR] unit decrease	Illumina [634583]	N
1070	chr11	63594221	63594222	rs11231596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.1		rs11231596-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1070	chr11	63595924	63595925	rs7949608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q13.1		rs7949608-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1070	chr11	63598993	63598994	rs11231598	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q13.1	Intergenic	rs11231598-?		2E-6		1.23	[1.13-1.34]	Illumina [7645193] (imputed)	N
1070	chr11	63599439	63599440	rs7950543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q13.1	NR	rs7950543-C	NR	4E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix [9000000] (imputed)	N
1070	chr11	63632672	63632673	rs10792422	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11q13.1	NR	rs10792422-G	NR	2E-8		1.0204082		NR [NR] (imputed)	N
1070	chr11	63648572	63648573	rs11231629	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q13.1	NR	rs11231629-C	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1070	chr11	63666943	63666944	rs12099085	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	11q13.1	MARK2	rs12099085-A	0.007	5E-6				Affymetrix [316934]	N
1070	chr11	63680718	63680719	rs4980532	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q13.1	intergenic	rs4980532-T	0.558	4E-8		0.178	[0.12-0.24] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1070	chr11	63680718	63680719	rs4980532	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q13.1	intergenic	rs4980532-T	0.558	2E-10	(EA, initial)	0.301	[0.21-0.39] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1070	chr11	63682243	63682244	rs146976071	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	RCOR2	rs146976071-T	0.0145	4E-26	(AA)	0.6134	[0.5-0.73] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1070	chr11	63689878	63689879	rs7121067	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7121067-?	NR	3E-8				NR [2625067]	N
1070	chr11	63689878	63689879	rs7121067	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs7121067-?	NR	9E-9				NR [2625067]	N
1070	chr11	63691048	63691049	rs11231640	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q13.1	RCOR2, MARK2	rs11231640-?		8E-9				NR [6786993] (imputed)	N
1071	chr11	63709032	63709032	rs11373615	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q13.1	NAA40	rs11373615-?	NR	4E-8		0.0261	[0.018-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
1071	chr11	63744608	63744609	rs4980515	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q13.1	AP000721.4	rs4980515-T	0.4951	9E-17		0.2086	[0.16-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1071	chr11	63785347	63785348	rs11231677	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q13.1	COX8A, OTUB1, MACROD1	rs11231677-G	0.505	6E-8		1.0649173		NR [9372253] (imputed)	N
1071	chr11	63787202	63787203	rs320131	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	11q13.1	MACROD1	rs320131-C	0.057	8E-7		0.3892	[0.23-0.54] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1071	chr11	63790930	63790931	rs484201	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	11q13.1	NR	rs484201-T	0.4732	2E-8		0.06357388	[0.041-0.086] unit increase	NR [NR]	N
1071	chr11	63790930	63790931	rs484201	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	11q13.1	NR	rs484201-T	0.4732	9E-9		0.06510238	[0.043-0.087] unit increase	NR [NR]	N
1072	chr11	63834732	63834733	rs145628694	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	11q13.1	NR	rs145628694-?	NR	2E-6		1.1405	[0.73-1.55] unit increase	Illumina [at least 560000] (imputed)	N
1072	chr11	63843030	63843031	rs12799550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12799550-T	NR	7E-22		0.079719	[0.063-0.096] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63843030	63843031	rs12799550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12799550-T	NR	8E-22		0.0796432	[0.063-0.096] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63843030	63843031	rs12799550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12799550-T	NR	2E-10		0.0547179	[0.038-0.072] unit decrease	Affymetrix [321788] (imputed)	N
1072	chr11	63843030	63843031	rs12799550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12799550-T	NR	5E-8		0.0453004	[0.029-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1072	chr11	63845293	63845294	rs1212642	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs1212642-?	NR	5E-37		0.05651	[0.048-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2, RP11-21A7A.4	rs1006207-C	NR	2E-9		0.0185382	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2, RP11-21A7A.4	rs1006207-C	NR	2E-9		0.018445	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	MACROD1	rs1006207-T	0.5628	4E-41		0.0468	[0.04-0.054] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q13.1	MACROD1	rs1006207-T	0.6885	1E-6		0.02132	[0.013-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs1006207-T	0.5664	3E-15	(women)	0.04	[0.03-0.05] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1072	chr11	63849811	63849812	rs1006207	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs1006207-T	0.5376	5E-29	(men)	0.0617	[0.051-0.072] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1072	chr11	63851481	63851481	rs144938864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2, RP11-21A7A.4	rs144938864-C	NR	2E-8		0.0400578	[0.026-0.054] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63851481	63851481	rs144938864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2, RP11-21A7A.4	rs144938864-C	NR	2E-8		0.040553	[0.026-0.055] unit increase	Affymetrix [321169] (imputed)	N
1072	chr11	63852715	63852716	rs10897473	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11q13.1	RP11-21A7A.2, MACROD1, RP11-21A7A.4	rs10897473-T	0.2087	9E-10		0.02684552	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1072	chr11	63856076	63856076	rs35698406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs35698406-CG	NR	8E-9		0.0210276	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63856076	63856076	rs35698406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs35698406-CG	NR	9E-10		0.0223721	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1072	chr11	63856634	63856635	rs12805664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12805664-G	NR	1E-13		0.0268201	[0.02-0.034] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63856634	63856635	rs12805664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs12805664-G	NR	6E-14		0.0271065	[0.02-0.034] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63856634	63856635	rs12805664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs12805664-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1072	chr11	63859119	63859120	rs883798	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs883798-G	NR	2E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1072	chr11	63859141	63859142	rs7947315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs7947315-T	NR	4E-13		0.0296422	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63859141	63859142	rs7947315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs7947315-T	NR	6E-13		0.0293828	[0.021-0.037] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63859750	63859751	rs1807304	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs1807304-?	NR	3E-136		0.1286	[0.12-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
1072	chr11	63861316	63861317	rs7941785	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q13.1	Intergenic	rs7941785-A	0.3739	3E-9	(MTAG)	0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr11	63861316	63861317	rs7941785	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q13.1	NR	rs7941785-A	NR	5E-8		5.46	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0973	3E-6		0.0336	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0973	1E-6	(women)	0.0447	[0.027-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	11q13.1	NR	rs11231693-A	0.06278434416435	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0868	8E-7		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0855	6E-10	(women)	0.0586	[0.04-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0624	4E-8	(EA)	0.0411	[0.026-0.056] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63862611	63862612	rs11231693	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1, VEGFB	rs11231693-A	0.0609	3E-11	(EA, women)	0.0684	[0.048-0.089] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63862881	63862882	rs11231694	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1	rs11231694-C	0.0592	7E-6	(EA)	0.0461	[0.026-0.066] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63862881	63862882	rs11231694	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MACROD1	rs11231694-C	0.0592	4E-8	(EA, women)	0.0698	[0.045-0.095] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1072	chr11	63863202	63863203	rs35741938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs35741938-A	NR	8E-9		0.0729719	[0.048-0.098] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63863202	63863203	rs35741938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs35741938-A	NR	1E-8		0.0724751	[0.048-0.097] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63868358	63868359	rs17158803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs17158803-A	NR	6E-18		0.0674796	[0.052-0.083] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63868358	63868359	rs17158803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs17158803-A	NR	6E-18		0.0675832	[0.052-0.083] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63868358	63868359	rs17158803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs17158803-A	NR	4E-10		0.04941	[0.034-0.065] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63868358	63868359	rs17158803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs17158803-A	NR	4E-10		0.0508746	[0.035-0.067] unit decrease	Affymetrix [321788] (imputed)	N
1072	chr11	63868358	63868359	rs17158803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	MACROD1, RP11-21A7A.2	rs17158803-A	NR	3E-9		0.0469636	[0.031-0.062] unit increase	Affymetrix [321169] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	11q13.1	MACROD1	rs2845885-T	0.9342	1E-8		0.0204	[0.013-0.028] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11q13.1	MACROD1	rs2845885-T	0.9235	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11q13.1	MACROD1	rs2845885-T	0.9235	8E-11				Affymetrix, Illumina [2331072] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q13.1	NR	rs2845885-C	0.05	1E-31		0.045	[0.038-0.052] unit increase	Affymetrix [2446094] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q13.1	NR	rs2845885-C	0.05	5E-8				Affymetrix [2446094] (imputed)	N
1072	chr11	63869061	63869062	rs2845885	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	11q13.1	NR	rs2845885-?	NR	2E-7				NR [1800000]	N
1072	chr11	63869061	63869062	rs2845885	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.1	MACROD1	rs2845885-T	0.907	6E-6		0.028	[0.016-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1072	chr11	63869106	63869107	rs2701540	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q13.1	MACROD1	rs2701540-?		3E-8		0.0299	[0.019-0.04] unit decrease	Illumina [31500000] (imputed)	N
1072	chr11	63869595	63869596	rs641811	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	11q13.1	FLRT1	rs641811-G		1E-9		0.037	[0.025-0.049] mg/dl increase	NR [NR] (imputed)	N
1072	chr11	63873082	63873083	rs4980504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs4980504-G	NR	3E-9		0.0168902	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63873082	63873083	rs4980504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs4980504-G	NR	3E-9		0.0168917	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63873672	63873673	rs12418845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q13.1		rs12418845-A	NR	2E-9		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1072	chr11	63873672	63873673	rs12418845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs12418845-A	NR	1E-26		0.0487	[0.04-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1072	chr11	63877162	63877163	rs11231698	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	11q13.1		rs11231698-C	0.945155	2E-8		0.0499281	[0.033-0.067] unit increase	NR [11722792] (imputed)	N
1072	chr11	63877162	63877163	rs11231698	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q13.1	FLRT1, MACROD1	rs11231698-?		1E-8		0.0259	[0.017-0.035] unit decrease	Illumina [31500000] (imputed)	N
1072	chr11	63877162	63877163	rs11231698	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.1	NR	rs11231698-C	NR	6E-9		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1072	chr11	63877162	63877163	rs11231698	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.1	NR	rs11231698-C	0.94	3E-8	(EA)	0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1072	chr11	63877162	63877163	rs11231698	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.1	NR	rs11231698-C	NR	3E-6		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1072	chr11	63878073	63878074	rs2186643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs2186643-A	NR	2E-9		0.0171091	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr11	63878073	63878074	rs2186643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs2186643-A	NR	2E-9		0.0171037	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1072	chr11	63878073	63878074	rs2186643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs2186643-A	NR	5E-8		0.0157346	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1072	chr11	63883984	63883985	rs614397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs614397-T	NR	2E-12		0.0292958	[0.021-0.037] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63883984	63883985	rs614397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs614397-T	NR	4E-12		0.0289323	[0.021-0.037] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63883984	63883985	rs614397	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MACROD1, FLRT1	rs614397-T	NR	3E-8		0.0231548	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63884452	63884453	rs3751120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q13.1	NR	rs3751120-T	NR	7E-19		0.04	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr11	63884452	63884453	rs3751120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.1	NR	rs3751120-T	NR	4E-13		0.0342	[0.025-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1072	chr11	63884452	63884453	rs3751120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q13.1	NR	rs3751120-T	NR	8E-10		0.0285	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr11	63884452	63884453	rs3751120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q13.1	NR	rs3751120-T	NR	4E-10		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr11	63884560	63884561	rs34856996	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs34856996-A	NR	2E-16		0.043	[0.033-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr11	63889292	63889293	rs627055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q13.1	MACROD1	rs627055-T	0.500001	3E-14		0.017181406	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr11	63889442	63889442	rs548488926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q13.1	MACROD1	rs548488926-TA	0.075386	2E-14		0.03313987	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr11	63892300	63892301	rs683686	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q13.1	NR	rs683686-?	NR	4E-7		5.062	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1072	chr11	63892953	63892954	rs139612658	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs139612658-?	NR	5E-111	(conditional on round 2)	0.34669685	[0.32-0.38] unit increase novel	Illumina [6108953] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.1	MACROD1	rs190528931-A	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.1	MACROD1	rs190528931-A	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.1	MACROD1	rs190528931-A	NR	6E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.1	MACROD1	rs190528931-A	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q13.1	MACROD1	rs190528931-A	NR	3E-6		0.035	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q13.1	MACROD1	rs190528931-A	NR	2E-7	(EA)	0.041	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.1	MACROD1	rs190528931-A	NR	5E-12				Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.1	MACROD1	rs190528931-A	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.1	MACROD1	rs190528931-A	NR	7E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.1	MACROD1	rs190528931-A	NR	2E-16				Affymetrix, Illumina [NR] (imputed)	N
1072	chr11	63911272	63911273	rs190528931	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	11q13.1	NR	rs190528931-A	0.0369	2E-12				Affymetrix, Illumina [at least 2500000] (imputed)	N
1072	chr11	63911877	63911878	rs75011819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs75011819-A	NR	1E-12		0.0472	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1072	chr11	63917673	63917674	rs142439069	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	MACROD1	rs142439069-T		7E-22		0.8012	[0.64-0.96] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1072	chr11	63929214	63929215	rs11231711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q13.1		rs11231711-A	NR	6E-10		0.0811	[0.055-0.107] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1072	chr11	63929214	63929215	rs11231711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	11q13.1		rs11231711-A	NR	5E-11		0.0796	[0.056-0.103] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1072	chr11	63929214	63929215	rs11231711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q13.1		rs11231711-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1072	chr11	63930594	63930594	rs150202525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MACROD1	rs150202525-A	NR	6E-16		0.0493529	[0.037-0.061] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63930594	63930594	rs150202525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	MACROD1	rs150202525-A	NR	7E-16		0.0492425	[0.037-0.061] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63930594	63930594	rs150202525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MACROD1	rs150202525-A	NR	6E-10		0.0380466	[0.026-0.05] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63930594	63930594	rs150202525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	MACROD1	rs150202525-A	NR	1E-9		0.0376199	[0.026-0.05] unit increase	Affymetrix [321169] (imputed)	N
1072	chr11	63941733	63941734	rs4980508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	11q13.1		rs4980508-A	0.63358	3E-8		0.0254135	[0.016-0.034] unit decrease	Illumina [13471431] (imputed)	N
1072	chr11	63943606	63943607	rs113809996	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q13.1	NR	rs113809996-?	NR	2E-8				Illumina [7760689] (imputed)	N
1072	chr11	63947112	63947113	rs111412612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs111412612-C	NR	4E-9		0.035	[0.023-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1072	chr11	63948353	63948354	rs4980525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q13.1	NR	rs4980525-A	0.495888	1E-11		0.012921	[0.0092-0.0167] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1072	chr11	63948699	63948710	rs140861188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.1	STIP1	rs140861188-TAATAATTATTA	0.498787	8E-12		0.015204601	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr11	63953120	63953121	rs3751122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	STIP1	rs3751122-T	NR	2E-25		0.0550845	[0.045-0.065] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63953120	63953121	rs3751122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	STIP1	rs3751122-T	NR	5E-25		0.0547323	[0.044-0.065] unit increase	Affymetrix [319769] (imputed)	N
1072	chr11	63953120	63953121	rs3751122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	STIP1	rs3751122-T	NR	4E-15		0.0418964	[0.031-0.052] unit increase	Affymetrix [321114] (imputed)	N
1072	chr11	63953120	63953121	rs3751122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	STIP1	rs3751122-T	NR	3E-14		0.0407591	[0.03-0.051] unit increase	Affymetrix [321169] (imputed)	N
1072	chr11	63956717	63956718	rs3888316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q13.1		rs3888316-A	NR	4E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1072	chr11	63959258	63959259	rs4980524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q13.1		rs4980524-C	NR	8E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1072	chr11	63959258	63959259	rs4980524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs4980524-A	0.574733	3E-11				Affymetrix, Illumina [17210439] (imputed)	N
1073	chr11	63963946	63963947	rs11607165	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	11q13.1	STIP1	rs11607165-?	NR	4E-6				Illumina [835136]	N
1073	chr11	63964604	63964605	rs2236647	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q13.1	NR	rs2236647-?	NR	2E-7		0.0091312	[0.0057-0.0126] unit increase	Affymetrix [805426] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	11q13.1		rs149000560-?	NR	5E-41		0.146838	[0.13-0.17] unit decrease	NR [9800000] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	11q13.1		rs149000560-?	NR	3E-21		0.100785	[0.08-0.121] unit decrease	NR [9800000] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q13.1	FERMT3	rs149000560-A	0.00876999999999995	2E-36		0.15235598	[0.13-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q13.1	FERMT3	rs149000560-A	0.00877300000000003	1E-17		0.102279134	[0.079-0.126] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q13.1	FERMT3	rs149000560-A	0.00876999999999995	2E-17		0.10163111	[0.078-0.125] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11q13.1	FERMT3	rs149000560-A	0.0082	1E-26		0.2152245	[0.18-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q13.1	FERMT3	rs149000560-A	0.0082	5E-17		0.170717	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	63974965	63974966	rs149000560	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q13.1	FERMT3	rs149000560-A	0.0082	1E-16		0.167884	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	63974994	63974995	rs142815441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q13.1		rs142815441-G	NR	2E-9		0.1108	[0.075-0.147] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1073	chr11	63974994	63974995	rs142815441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q13.1		rs142815441-G	NR	1E-10		0.1179	[0.082-0.154] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1073	chr11	63974994	63974995	rs142815441	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	11q13.1		rs142815441-?	NR	9E-10		0.0965216	[0.066-0.127] unit increase	NR [9800000] (imputed)	N
1073	chr11	63974994	63974995	rs142815441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q13.1		rs142815441-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1073	chr11	63977545	63977546	rs12787945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.1	FERMT3	rs12787945-A	0.428287	4E-10		0.014211657	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1073	chr11	63977545	63977546	rs12787945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q13.1	NR	rs12787945-G	0.57217	6E-13		0.013938	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1073	chr11	63979642	63979643	rs12575642	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	11q13.1	FERMT3	rs12575642-?	NR	1E-6				Illumina [835136]	N
1073	chr11	63986712	63986713	rs11603538	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	11q13.1	MACROD1, FLRT1, STIP1, FERMT3, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B	rs11603538-?	NR	9E-10		0.0154199	[0.01-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1073	chr11	63987827	63987828	rs192282539	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs192282539-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1073	chr11	63988044	63988045	rs3802932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs3802932-G	0.941373	2E-8		0.0478501	[0.031-0.064] unit increase	NR [11722792] (imputed)	N
1073	chr11	63988044	63988045	rs3802932	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q13.1	FERMT3	rs3802932-A	0.0576598	6E-10		0.08005359	[0.055-0.105] unit increase	Affymetrix [7288503] (imputed)	N
1073	chr11	63988044	63988045	rs3802932	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	11q13.1	FERMT3	rs3802932-A	0.0581295	2E-11		0.08027365	[0.057-0.104] unit increase	Affymetrix [7288503] (imputed)	N
1073	chr11	63988101	63988102	rs3802933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.1	NR	rs3802933-T	0.17308	6E-23		0.024361	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1073	chr11	63990996	63990997	rs5792315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11q13.1		rs5792315-A	0.432382726	5E-8		0.07535342	[0.048-0.102] unit increase	Illumina [13401454] (imputed)	N
1073	chr11	63991800	63991801	rs1059440	21784300	Mick E	2011-07-13	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of the child behavior checklist dysregulation profile.	Attention deficit hyperactivity disorder	341 ADHD case offspring from 339 trios	NA	11q13.1	TRPT1	rs1059440-?	NR	4E-6				Illumina [835136]	N
1073	chr11	63999239	63999240	rs3741404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q13.1	DNAJC4	rs3741404-C	0.3596	4E-9		0.02236431	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	64000597	64000598	rs35090903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.1	DNAJC4, RP11-783K16.14	rs35090903-T	0.181202	3E-12		0.020360475	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64004578	64004598	rs386754324	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs386754324-G	0.947932	4E-10		0.0568855	[0.039-0.075] unit increase	NR [11722792] (imputed)	N
1073	chr11	64004578	64004598	rs386754324	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs386754324-G	0.947932	3E-11		0.061473	[0.043-0.08] unit increase	NR [11722792] (imputed)	N
1073	chr11	64004578	64004598	rs386754324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	VEGFB	rs386754324-GACA	NR	1E-19		0.0607833	[0.048-0.074] unit decrease	Affymetrix [321788] (imputed)	N
1073	chr11	64004578	64004598	rs386754324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	VEGFB	rs386754324-GACA	NR	2E-14		0.0492804	[0.037-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1073	chr11	64004642	64004643	rs12294913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q13.1	VEGFB	rs12294913-G	0.048878	1E-12		0.037532076	[0.027-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q13.1		rs56271783-C	NR	1E-20		0.0513	[0.041-0.062] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	VEGFB	rs56271783-C	NR	9E-44		0.0944197	[0.081-0.108] unit increase	Affymetrix [319769] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	VEGFB	rs56271783-C	NR	5E-44		0.0947603	[0.081-0.108] unit increase	Affymetrix [319769] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	VEGFB	rs56271783-C	NR	5E-24		0.0694553	[0.056-0.083] unit increase	Affymetrix [321114] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.1	VEGFB	rs56271783-C	NR	3E-8		0.0432288	[0.028-0.059] unit decrease	Affymetrix [323858] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	VEGFB	rs56271783-C	NR	3E-24		0.069903	[0.056-0.083] unit increase	Affymetrix [321169] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q13.1	VEGFB	rs56271783-G	0.954643	8E-44		0.0669757	[0.058-0.076] unit decrease	Affymetrix [NR] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.1	VEGFB	rs56271783-G	0.954734	3E-34		0.0564659	[0.047-0.066] unit increase	Affymetrix [NR] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.1	VEGFB	rs56271783-G	0.954733	2E-17		0.0405349	[0.031-0.05] unit increase	Affymetrix [NR] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs56271783-?	NR	1E-38				Affymetrix [~ 8270000] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs56271783-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.1		rs56271783-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.1	VEGFB	rs56271783-C	0.0448	1E-16		0.0572	[0.044-0.071] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q13.1	NR	rs56271783-C	0.0439	1E-33		0.059	[0.049-0.069] unit increase	NR [~ 27400000] (imputed)	N
1073	chr11	64004722	64004723	rs56271783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q13.1	NR	rs56271783-C	0.0439	9E-20		0.0441	[0.035-0.054] unit increase	NR [~ 27400000] (imputed)	N
1073	chr11	64005411	64005412	rs4930152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.1	VEGFB	rs4930152-A	0.303924	2E-12		0.017045619	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64005411	64005412	rs4930152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.1	VEGFB	rs4930152-A	0.3039	7E-13		0.017315872	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64005411	64005412	rs4930152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q13.1	NR	rs4930152-A	0.303554	7E-14		0.016193	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1073	chr11	64006906	64006907	rs7125217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q13.1		rs7125217-T	NR	1E-11		0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1073	chr11	64007158	64007159	rs58779949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.1		rs58779949-A	0.1698	4E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1073	chr11	64007158	64007159	rs58779949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.1	Intergenic	rs58779949-A	0.1698	2E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1073	chr11	64009878	64009879	rs4672	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q13.1	FKBP2	rs4672-G	0.917	3E-9		0.9033	[0.87-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1073	chr11	64009878	64009879	rs4672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q13.1	Intergenic	rs4672-A	0.083	6E-9	(MTAG)	0.0242	[0.016-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1073	chr11	64012783	64012784	rs12798333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.1	PPP1R14B	rs12798333-A	0.181017	6E-15		0.022786845	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	9E-17		0.0773924	[0.059-0.096] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953481	2E-9		0.0575544	[0.039-0.076] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953573	6E-16		0.0747761	[0.057-0.093] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-12		0.0670325	[0.048-0.086] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-12		0.0658964	[0.047-0.084] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-15		0.0736709	[0.055-0.092] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	8E-15		0.0721682	[0.054-0.09] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	7E-13		0.0676442	[0.049-0.086] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-10		0.0614187	[0.043-0.08] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-14		0.0697632	[0.052-0.088] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	9E-14		0.0703474	[0.052-0.089] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	9E-12		0.0641571	[0.046-0.083] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-13		0.0694492	[0.051-0.088] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-14		0.0721457	[0.054-0.091] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	9E-10		0.0585207	[0.04-0.077] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-10		0.0599539	[0.041-0.079] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-11		0.0633513	[0.045-0.082] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-11		0.0625202	[0.044-0.081] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	8E-11		0.0615555	[0.043-0.08] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-12		0.0616532	[0.044-0.079] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-10		0.0600129	[0.041-0.079] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-11		0.0586961	[0.042-0.076] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-15		0.0722304	[0.054-0.09] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-11		0.0634808	[0.045-0.082] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-13		0.0681716	[0.05-0.087] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	6E-15		0.0731311	[0.055-0.092] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-10		0.0594148	[0.041-0.078] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-10		0.059005	[0.04-0.078] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	6E-12		0.0608213	[0.043-0.078] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-11		0.0628009	[0.044-0.081] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-10		0.0550658	[0.038-0.072] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-10		0.0553653	[0.038-0.073] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953481	7E-10		0.0587396	[0.04-0.077] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953573	9E-10		0.0534296	[0.036-0.071] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-15		0.0747059	[0.056-0.093] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	7E-10		0.0585197	[0.04-0.077] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-13		0.0686027	[0.05-0.087] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-13		0.068969	[0.051-0.087] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	8E-10		0.0535891	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-16		0.0763783	[0.058-0.095] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-8		0.0502462	[0.032-0.068] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-9		0.0564	[0.038-0.075] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-10		0.058616	[0.041-0.077] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-10		0.0598381	[0.041-0.078] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-12		0.0608778	[0.044-0.078] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-8		0.0475808	[0.03-0.065] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-11		0.0633007	[0.045-0.082] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-10		0.0559143	[0.039-0.073] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	6E-11		0.0620815	[0.043-0.081] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	6E-12		0.0593285	[0.042-0.076] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-17		0.0773093	[0.059-0.095] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-16		0.0757034	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	5E-11		0.0624999	[0.044-0.081] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-9		0.057341	[0.039-0.076] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-14		0.0667016	[0.049-0.084] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-14		0.0665717	[0.05-0.084] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-10		0.0570665	[0.04-0.074] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-16		0.0761603	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953481	2E-10		0.060039	[0.042-0.078] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	9E-16		0.0744105	[0.056-0.093] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	8E-13		0.0670548	[0.049-0.085] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	6E-9		0.0554723	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	2E-15		0.0734405	[0.055-0.092] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-11		0.0633267	[0.045-0.082] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-13		0.0658491	[0.048-0.083] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-8		0.0535735	[0.035-0.072] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	4E-14		0.0654531	[0.048-0.082] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	3E-12		0.0642333	[0.046-0.082] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q13.1		rs71468663-A	0.953575	1E-10		0.0562066	[0.039-0.073] unit increase	NR [11722792] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q13.1		rs71468663-AC	NR	3E-30		0.0629	[0.052-0.074] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q13.1		rs71468663-AC	NR	9E-15		0.0424	[0.032-0.053] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.1	RP11-783K16.13, PLCB3, PPP1R14B	rs71468663-AC	0.0462129999999999	8E-21		0.04993186	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q13.1	RP11-783K16.13, PLCB3, PPP1R14B	rs71468663-AC	0.046281	4E-10		0.032931257	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q13.1	CCDC88B	rs71468663-?	NR	2E-21		0.0589	[0.048-0.07] unit increase	Affymetrix [5701386] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q13.1	NR	rs71468663-A	0.95306	2E-11		0.0172929	[0.012-0.023] unit increase	Affymetrix [16585854] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q13.1	NR	rs71468663-A	0.95306	6E-8		0.0165779	[0.01-0.0232] unit increase	Affymetrix [16585866] (imputed)	N
1073	chr11	64018104	64018104	rs71468663	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.1	intergenic	rs71468663-?	0.9555	2E-15		0.0537	[0.041-0.067] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1073	chr11	64021604	64021605	rs12421615	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11q13.1	PPP1R14B, PLCB3, BAD, GPR137, KCNK4, TEX40, ESRRA, TRMT112, PRDX5	rs12421615-G	0.6461	5E-8		1.1498218	[1.1-1.2]	Illumina [8966411] (imputed)	N
1073	chr11	64021820	64021821	rs2302263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.1		rs2302263-C	0.91188	2E-8		0.0402377	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64021820	64021821	rs2302263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs2302263-C	0.911879	3E-9		0.0417667	[0.028-0.055] unit increase	NR [11722792] (imputed)	N
1073	chr11	64021820	64021821	rs2302263	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs2302263-C	0.911818	2E-10		0.0443922	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
1073	chr11	64023269	64023270	rs12419663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs12419663-T	NR	5E-14		0.0501	[0.037-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1073	chr11	64023970	64023971	rs7943988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs7943988-A	0.269277	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1073	chr11	64024055	64024056	rs588177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.1		rs588177-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1073	chr11	64024055	64024056	rs588177	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q13.1	PLCB3	rs588177-A	0.6878	1E-9		0.0234532	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	64024055	64024056	rs588177	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q13.1	PLCB3	rs588177-A	0.6878	2E-10		0.0247408	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr11	64026143	64026144	rs2244625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q13.1	PLCB3	rs2244625-A	0.688273	1E-9		0.01471064	[0.01-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64026143	64026144	rs2244625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q13.1	PLCB3	rs2244625-A	0.688303	9E-13		0.017211018	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64026143	64026144	rs2244625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q13.1	PLCB3	rs2244625-A	0.688298	6E-14		0.018068753	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64026638	64026639	rs12146487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs12146487-A	NR	2E-30		0.0361	[0.03-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1073	chr11	64026684	64026685	rs28395882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q13.1		rs28395882-T	NR	1E-8		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1073	chr11	64026684	64026685	rs28395882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs28395882-T	0.258304	1E-20				Affymetrix, Illumina [24332387] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q13.1		rs117874826-A	0.9868	5E-12		0.69646025	[0.49-0.9] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	11q13.1		rs117874826-A	0.9763	4E-9		5.90087	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q13.1		rs117874826-A	0.9868	1E-9		0.38762388	[0.26-0.52] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q13.1	PLCB3	rs117874826-C	0.014653	2E-10		0.06577079	[0.045-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.1	PLCB3	rs117874826-C	0.0146770000000001	2E-9		0.06267068	[0.042-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64027665	64027666	rs117874826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.1		rs117874826-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	2E-9		0.04941	[0.033-0.066] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	9E-10		0.0504801	[0.034-0.067] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	5E-9		0.0484747	[0.032-0.065] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	5E-8		0.0455438	[0.029-0.062] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	1E-8		0.0468461	[0.031-0.063] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	2E-8		0.0470099	[0.031-0.063] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	1E-9		0.0494734	[0.033-0.065] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q13.1		rs35169799-C	0.936683	2E-9		0.0470084	[0.032-0.062] unit increase	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.1		rs35169799-C	0.936683	2E-8		0.0463254	[0.03-0.062] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	2E-9		0.0491339	[0.033-0.065] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	5E-11		0.053466	[0.038-0.069] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	5E-10		0.0507874	[0.035-0.067] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	3E-10		0.0514997	[0.036-0.067] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	1E-14		0.0625399	[0.047-0.078] unit increase	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	3E-9		0.0488363	[0.033-0.065] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs35169799-C	0.93668	8E-10		0.0502096	[0.034-0.066] unit decrease	NR [11722792] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	1E-22		0.048	[0.038-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	5E-28		0.0539	[0.044-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	7E-17		0.0428	[0.033-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	5E-11		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	5E-12		0.034	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q13.1	NR	rs35169799-T	NR	2E-9		0.0308	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.1	NR	rs35169799-C	0.9343	5E-8		0.0504	[0.032-0.068] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	11q13.1	PLCB3	rs35169799-T	0.0609	7E-16		0.0489	[0.037-0.061] unit increase	Affymetrix, Illumina [at least 228985]	N
1073	chr11	64031240	64031241	rs35169799	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	11q13.1	PLCB3	rs35169799-T	0.0651	1E-15		0.0492	[0.037-0.061] unit increase	Affymetrix, Illumina [at least 228985]	N
1073	chr11	64031240	64031241	rs35169799	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	11q13.1	PLCB3	rs35169799-T	0.0608	9E-15		0.0339	[0.025-0.043] unit increase	Affymetrix, Illumina [at least 228985]	N
1073	chr11	64031240	64031241	rs35169799	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	11q13.1	PLCB3	rs35169799-T	0.066	3E-13		0.0327	[0.024-0.042] unit increase	Affymetrix, Illumina [at least 228985]	N
1073	chr11	64031240	64031241	rs35169799	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q13.1	NA	rs35169799-T	0.0615	6E-20		0.0373	[0.029-0.045] unit increase	NR [~ 27400000] (imputed)	N
1073	chr11	64031240	64031241	rs35169799	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11q13.1	PLCB3	rs35169799-T	0.071	2E-7		1.06	[1.03-1.09]	Affymetrix, Illumina [247470]	N
1073	chr11	64031240	64031241	rs35169799	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11q13.1	PLCB3	rs35169799-T	0.0585	2E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [247470]	N
1073	chr11	64031240	64031241	rs35169799	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	11q13.1	NR	rs35169799-T	NR	2E-29		0.0423293	[0.035-0.05] unit decrease	Illumina [242289]	N
1073	chr11	64031240	64031241	rs35169799	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	11q13.1	NR	rs35169799-T	0.069	6E-12		0.04	unit decrease	Illumina [242289]	N
1073	chr11	64031797	64031798	rs589030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q13.1	NR	rs589030-C	0.342269	7E-17		0.016982	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1073	chr11	64031797	64031798	rs589030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs589030-C	0.386886	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
1073	chr11	64031797	64031798	rs589030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q13.1	NR	rs589030-C	0.342229	1E-13		0.014867	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1073	chr11	64031797	64031798	rs589030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs589030-C	0.386068	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
1073	chr11	64031797	64031798	rs589030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q13.1	NR	rs589030-C	0.342155	1E-13		0.014995	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1073	chr11	64031797	64031798	rs589030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.1		rs589030-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1073	chr11	64031797	64031798	rs589030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.1		rs589030-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1073	chr11	64033554	64033555	rs3815362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs3815362-T	0.26749	3E-14				Affymetrix, Illumina [24558453] (imputed)	N
1073	chr11	64042996	64042997	rs660442	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q13.1		rs660442-A	NR	1E-9		0.9	[0.87-0.93]	NR [13810676] (imputed)	N
1073	chr11	64046640	64046641	rs11231740	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	11q13.1		rs11231740-?	NR	2E-6		0.968253	[0.95-0.98]	NR [688737]	N
1073	chr11	64046640	64046641	rs11231740	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.1	BAD	rs11231740-C	0.51967	9E-11		0.0119509	[0.0083-0.0156] unit increase	NR [13737936] (imputed)	N
1073	chr11	64046640	64046641	rs11231740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.1		rs11231740-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1073	chr11	64046640	64046641	rs11231740	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.1		rs11231740-?	NR	2E-9		0.0125367	[0.0085-0.0166] unit increase	Affymetrix [20259828] (imputed)	N
1073	chr11	64047151	64047152	rs687735	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	11q13.1	NR	rs687735-A	0.01	9E-7		3.26	unit decrease	Illumina [8591557] (imputed)	N
1073	chr11	64047555	64047556	rs11231742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	BAD, GPR137	rs11231742-G	NR	2E-10		0.0250866	[0.017-0.033] unit increase	Affymetrix [319769] (imputed)	N
1073	chr11	64047555	64047556	rs11231742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	BAD, GPR137	rs11231742-G	NR	4E-10		0.0246583	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
1073	chr11	64048911	64048912	rs477895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q13.1		rs477895-T	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1073	chr11	64048911	64048912	rs477895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs477895-T	0.819032	8E-23				Affymetrix, Illumina [24588908] (imputed)	N
1073	chr11	64048911	64048912	rs477895	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	11q13.1	BAD	rs477895-T	0.453	5E-8		4.19	[2.68-5.7] 10^9 L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
1073	chr11	64049020	64049021	rs34292685	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q13.1	GPR137	rs34292685-C	0.838208	8E-12		0.0127228	[0.0091-0.0164] unit increase	Affymetrix [12370749]	N
1073	chr11	64049020	64049021	rs34292685	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs34292685-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1073	chr11	64049020	64049021	rs34292685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.1		rs34292685-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1073	chr11	64049020	64049021	rs34292685	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q13.1	NA	rs34292685-T	0.1577	7E-13		0.0187	[0.014-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1073	chr11	64085147	64085148	rs28364831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q13.1	TRMT112	rs28364831-C	0.317893	1E-10		0.015288053	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1073	chr11	64085147	64085148	rs28364831	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q13.1	NR	rs28364831-C	0.312184	5E-12		0.013993	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1073	chr11	64085297	64085298	rs9787810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.1		rs9787810-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1073	chr11	64090421	64090422	rs7947143	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.1	NA	rs7947143-A	0.1541	8E-14		0.0175	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1074	chr11	64095177	64095178	rs11231749	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q13.1	PRDX5	rs11231749-C	NR	1E-11		1.0681	NR	Affymetrix, Illumina [8278136] (imputed)	N
1074	chr11	64096724	64096725	rs35583126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs35583126-C	NR	4E-13		0.0631862	[0.046-0.08] unit increase	Affymetrix [321114] (imputed)	N
1074	chr11	64096724	64096725	rs35583126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs35583126-C	NR	1E-13		0.0644937	[0.047-0.082] unit increase	Affymetrix [321169] (imputed)	N
1074	chr11	64097232	64097233	rs694739	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q13.1	NR	rs694739-G	0.381	5E-9		0.00880531	[0.0059-0.0117] unit increase	NR [9732723] (imputed)	N
1074	chr11	64097232	64097233	rs694739	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	11q13.1	PRDX5	rs694739-A	NR	2E-9		1.139	NR	Illumina [up to 11532644] (imputed)	N
1074	chr11	64097232	64097233	rs694739	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	11q13.1	NR	rs694739-T	NR	3E-16	(EA)	1.2658228	[1.19-1.33]	Illumina [128705]	N
1074	chr11	64097232	64097233	rs694739	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q13.1	PRDX5	rs694739-A	0.62	2E-9		1.07		Illumina [161311]	N
1074	chr11	64097232	64097233	rs694739	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	11q13.1	RPS6KA4	rs694739-A	0.61	2E-7		1.18		Illumina [237619] (imputed)	N
1074	chr11	64097232	64097233	rs694739	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	11q13.1	ESRRA, PRDX5	rs694739-A	0.626	6E-10		1.1	[1.05-1.16]	Affymetrix, Illumina [953241] (imputed)	N
1074	chr11	64097232	64097233	rs694739	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	11q13.1	PRDX5	rs694739-A	0.63	4E-7		1.33	1.19-1.48]	Illumina [463301]	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	1E-26		0.0583556	[0.048-0.069] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	5E-26		0.0577232	[0.047-0.068] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	1E-13		0.0408287	[0.03-0.052] unit increase	Affymetrix [321114] (imputed)	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	4E-12		0.0394973	[0.028-0.051] unit decrease	Affymetrix [321788] (imputed)	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	2E-10		0.0348223	[0.024-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1074	chr11	64100400	64100401	rs73502335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs73502335-A	NR	3E-14		0.0420845	[0.031-0.053] unit increase	Affymetrix [321169] (imputed)	N
1074	chr11	64100775	64100776	rs1662185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs1662185-A	NR	1E-11		0.0210878	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64100775	64100776	rs1662185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	AP003774.1	rs1662185-A	NR	1E-11		0.0211033	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64100775	64100776	rs1662185	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.1	NR	rs1662185-G	0.576	3E-8		0.0226	[0.015-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1074	chr11	64102947	64102948	rs574087	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q13.1		rs574087-A	0.617	9E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1074	chr11	64102947	64102948	rs574087	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	11q13.1	PRDX5	rs574087-A	NR	9E-14		1.32		Illumina [1233578] (imputed)	N
1074	chr11	64105928	64105929	rs499425	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q13.1		rs499425-?	NR	4E-9		1.06703	[1.05-1.09]	NR [685523]	N
1074	chr11	64106316	64106317	rs11231757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q13.1		rs11231757-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1074	chr11	64107476	64107477	rs479777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	11q13.1		rs479777-C	NR	1E-11		0.0682	[0.049-0.088] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1074	chr11	64107476	64107477	rs479777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q13.1		rs479777-C	NR	4E-9		0.0541	[0.036-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1074	chr11	64107476	64107477	rs479777	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q13.1	CCDC88B	rs479777-C	0.340767	2E-9		0.057627313	[0.039-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
1074	chr11	64107476	64107477	rs479777	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		11q13.1	NR	rs479777-T	NR	4E-6		1.0945338	[1.05-1.14]	Affymetrix [5734850] (imputed)	N
1074	chr11	64107476	64107477	rs479777	22837380	Fischer A	2012-07-26	Am J Respir Crit Care Med	A novel sarcoidosis risk locus for Europeans on chromosome 11q13.1.	Sarcoidosis	564 European ancestry cases, 1,575 European ancestry controls	3,080 European ancestry cases, 3,659 European ancestry controls	11q13.1	CCDC88B, KCNK4, PRDX5, GPR137, BAD	rs479777-?	0.64	3E-18		1.18	[1.18-1.43]	Affymetrix [1294967] (imputed)	N
1074	chr11	64107734	64107735	rs663743	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	11q13.1	CCDC88B	rs663743-A	0.340422	2E-9		0.068596356	[0.046-0.091] unit increase	Affymetrix [7260263] (imputed)	N
1074	chr11	64107734	64107735	rs663743	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	11q13.1	CCDC88B	rs663743-A	0.341399	2E-9		1.0526316	[1.03-1.08]	Affymetrix [7600000] (imputed)	N
1074	chr11	64107734	64107735	rs663743	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	11q13.1	CCDC88B	rs663743-A	0.321697	3E-10		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1074	chr11	64107734	64107735	rs663743	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	11q13.1	CCDC88B	rs663743-G	0.66	2E-13		1.2	[1.14-1.26]	Affymetrix, Illumina [7891602] (imputed)	N
1074	chr11	64107734	64107735	rs663743	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	11q13.1	CCDC88B	rs663743-A	0.156	9E-14		1.24	[NR]	Illumina [4577171] (imputed)	N
1074	chr11	64110421	64110422	rs11601860	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	11q13.1		rs11601860-T	NR	1E-10		0.146003	[0.1-0.19] unit decrease	NR [5054572] (imputed)	N
1074	chr11	64111927	64111928	rs685870	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		PRDX5	rs685870-T	NR	1E-11		1.08	NR	NR [8016731] (imputed)	N
1074	chr11	64112049	64112050	rs35864060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	CCDC88B	rs35864060-T	NR	3E-29		0.0885545	[0.073-0.104] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64112049	64112050	rs35864060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	CCDC88B	rs35864060-T	NR	2E-29		0.0887195	[0.073-0.104] unit increase	Affymetrix [319769] (imputed)	N
1074	chr11	64112049	64112050	rs35864060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	CCDC88B	rs35864060-T	NR	2E-18		0.07159	[0.056-0.088] unit decrease	Affymetrix [321788] (imputed)	N
1074	chr11	64112049	64112050	rs35864060	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	CCDC88B	rs35864060-T	NR	1E-14		0.0609153	[0.045-0.076] unit decrease	Affymetrix [321016] (imputed)	N
1074	chr11	64115136	64115137	rs510372	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	11q13.1	CCDC88B	rs510372-C	0.5700000000000001	2E-9		1.2345679	NR	Illumina [1143634] (imputed)	N
1074	chr11	64118182	64118183	rs1199047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	11q13.1		rs1199047-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1074	chr11	64120450	64120451	rs61886887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q13.1		rs61886887-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1074	chr11	64120799	64120800	rs80181608	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q13.1	NR	rs80181608-?	NR	4E-6		0.007804	[0.0045-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1074	chr11	64127229	64127230	rs3765041	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11q13.1	RPS6KA4	rs3765041-T	0.25923300000000005	3E-8		0.019164	[0.012-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1074	chr11	64129721	64129722	rs538147	22019778	Zhang F	2011-10-23	Nat Genet	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls	3,301 Han Chinese ancestry cases, 5,299 Han Chinese ancestry controls	11q13.1	RPS6KA4	rs538147-A	0.23	7E-6		1.17	[1.09-1.25]	NR [1701673] (imputed)	N
1074	chr11	64129721	64129722	rs538147	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	11q13.1	RPS6KA4	rs538147-G	0.61	2E-10		1.23	[1.15-1.31]	Illumina [507467]	N
1074	chr11	64133551	64133552	rs61886926	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q13.1	NR	rs61886926-T	0.384	8E-16		0.00891707	[0.0067-0.0111] unit decrease	NR [9732723] (imputed)	N
1074	chr11	64133551	64133552	rs61886926	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q13.1	NR	rs61886926-T	0.384	7E-12		0.017940067	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1074	chr11	64135297	64135298	rs645078	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q13.1	CCDC88B	rs645078-C	0.385	3E-9		0.925		Illumina [715631] (imputed)	N
1074	chr11	64135297	64135298	rs645078	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q13.1	CCDC88B	rs645078-C	0.385	3E-9		0.925		Illumina [715631] (imputed)	N
1074	chr11	64135297	64135298	rs645078	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q13.1	NR	rs645078-?	NR	3E-8				Affymetrix [NR]	N
1074	chr11	64135297	64135298	rs645078	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	11q13.1	RPS6KA4, PRDX5	rs645078-A	0.609	2E-6		1.09		Illumina [111236] (imputed)	N
1074	chr11	64150369	64150370	rs559928	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	11q13.1	TRPT1, DNAJC4, VEGFB, FKBP2, TEX40, TRMT112, PRDX5, FERMT3, NUDT22, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA, CCDC88B, RPS6KA4, STIP1	rs559928-?		5E-6				Illumina [9560910] (imputed)	N
1074	chr11	64150369	64150370	rs559928	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q13.1	intergenic	rs559928-?	NR	8E-14	(subset analysis)			Illumina [130052]	N
1074	chr11	64150369	64150370	rs559928	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.1	NR	rs559928-G	0.81	6E-8	(EA)	1.0923722		Affymetrix, Illumina [~ 9000000] (imputed)	N
1074	chr11	64150369	64150370	rs559928	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.1	NR	rs559928-G	0.81	3E-13	(EA)	1.098986		Affymetrix, Illumina [~ 9000000] (imputed)	N
1074	chr11	64150369	64150370	rs559928	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.1	NR	rs559928-G	0.81	4E-10	(EA)	1.1042032	[1.07-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1074	chr11	64150369	64150370	rs559928	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.1	RPS6KA4, CCDC88B, TRPT1, FLRT1	rs559928-C	0.821	4E-11		1.101	[1.061-1.142]	Affymetrix, Illumina [1230000] (imputed)	N
1074	chr11	64154675	64154676	rs79382056	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	RPS6KA4, LOC100996455	rs79382056-T		1E-12		0.3836	[0.28-0.49] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1074	chr11	64154980	64154981	rs77085155	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	11q13.1	Intergenic	rs77085155-C	0.04	2E-13		1.42	[1.29-1.56]	Affymetrix [710030]	N
1074	chr11	64154980	64154981	rs77085155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs77085155-C	NR	6E-37		0.0823	[0.07-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr11	64162896	64162897	rs506594	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	11q13.1	RPS6KA4	rs506594-?	NR	3E-6		0.44	0.31-0.62	Illumina [~ 18000000] (imputed)	N
1074	chr11	64162954	64162955	rs117073213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.1	AP003774.6	rs117073213-A	0.0384600000000001	1E-9		0.035656516	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1074	chr11	64172206	64172207	rs34112193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	AP003774.6	rs34112193-C	NR	3E-8		0.0399013	[0.026-0.054] unit increase	Affymetrix [321114] (imputed)	N
1074	chr11	64172206	64172207	rs34112193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	AP003774.6	rs34112193-C	NR	1E-8		0.0410701	[0.027-0.055] unit increase	Affymetrix [321169] (imputed)	N
1074	chr11	64213633	64213634	rs656785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs656785-A	NR	3E-9		0.0229	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr11	64219941	64219942	rs112185369	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.1	LOC100996455	rs112185369-G	0.768834	3E-14	(eicosapentaenoate (EPA; 20:5n3))	0.239	[0.18-0.3] unit increase	Illumina [13039987] (imputed)	N
1074	chr11	64219941	64219942	rs112185369	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.1	LOC100996455	rs112185369-G	0.768834	3E-14	(eicosapentaenoate (EPA; 20:5n3))	0.239	[0.18-0.3] unit increase	Illumina [13039987] (imputed)	N
1075	chr11	64226549	64226550	rs77874174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.1		rs77874174-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1075	chr11	64247849	64247850	rs76741582	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	11q13.1	SLC22A11	rs76741582-T	0.009	1E-10		3.93	[2.59-5.95]	Illumina [7206774] (imputed)	N
1075	chr11	64273829	64273830	rs145954970	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	11q13.1	SLC22A11	rs145954970-C	0.971	2E-21		12.43	[7.39-20.92]	Illumina [7206774] (imputed)	N
1075	chr11	64273829	64273830	rs145954970	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	SLC22A11	rs145954970-C	0.9745	1E-1001	(East Asian)	1.6573	[1.61-1.71] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1075	chr11	64275406	64275407	rs117205714	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs117205714-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1075	chr11	64275406	64275407	rs117205714	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs117205714-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1075	chr11	64310090	64310091	rs4930194	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	11q13.1	BC038767, SLC22A11	rs4930194-?	NR	4E-6		1.1111112	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
1075	chr11	64313141	64313142	rs111252042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs111252042-A	NR	3E-9		0.0376	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1075	chr11	64313290	64313291	rs7124676	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.1	SLC22A11	rs7124676-A	0.232	3E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1075	chr11	64313517	64313518	rs117497594	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs117497594-C	NR	2E-16		0.1037	[0.079-0.128] unit increase	Affymetrix [9000000] (imputed)	N
1075	chr11	64313980	64313981	rs145974261	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	11q13.1	NR	rs145974261-?	NR	1E-6		1.3059	[0.7-1.91] unit increase	Illumina [at least 560000] (imputed)	N
1075	chr11	64318346	64318347	rs12795471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	SLC22A11	rs12795471-T	NR	1E-8		0.0335476	[0.022-0.045] unit increase	Affymetrix [319769] (imputed)	N
1075	chr11	64318346	64318347	rs12795471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	SLC22A11	rs12795471-T	NR	2E-8		0.0328148	[0.021-0.044] unit increase	Affymetrix [319769] (imputed)	N
1075	chr11	64318346	64318347	rs12795471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs12795471-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1075	chr11	64323475	64323476	rs141159367	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs141159367-T	NR	3E-24		0.1963	[0.16-0.23] unit increase	Affymetrix [9000000] (imputed)	N
1075	chr11	64323612	64323613	rs35008345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs35008345-T	NR	4E-17		0.1419	[0.11-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1075	chr11	64323612	64323613	rs35008345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11q13.1	NR	rs35008345-T	NR	7E-11		0.1167	[0.082-0.152] unit decrease	Affymetrix [9000000] (imputed)	N
1075	chr11	64323612	64323613	rs35008345	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q13.1	NR	rs35008345-C	0.994808	3E-11		0.0590811	[0.042-0.077] unit increase	Affymetrix [16578495] (imputed)	N
1075	chr11	64323612	64323613	rs35008345	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q13.1	NR	rs35008345-C	0.994773	1E-20		0.182752	[0.14-0.22] unit increase	Affymetrix [16580851] (imputed)	N
1075	chr11	64323612	64323613	rs35008345	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q13.1	NR	rs35008345-C	0.994685	9E-14		0.131046	[0.097-0.165] unit increase	Affymetrix [16585745] (imputed)	N
1075	chr11	64325068	64325069	rs693591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs693591-C	NR	3E-54		0.0524	[0.046-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1075	chr11	64331461	64331462	rs17300741	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q13.1	NR	rs17300741-A	0.45	4E-188		0.0544	[0.051-0.058] unit increase	NR [NR]	N
1075	chr11	64331461	64331462	rs17300741	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	11q13.1	SLC22A11	rs17300741-A	0.51	7E-14		0.06	[0.046-0.078] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
1075	chr11	64332778	64332779	rs75933978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs75933978-T	NR	2E-17		0.1613	[0.12-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
1075	chr11	64332861	64332862	rs71456318	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q13.1	SLC22A11	rs71456318-A	0.4842	4E-92		0.079027	[0.071-0.087] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	11q13.1	SLC22A11	rs2078267-C	0.47	7E-16		1.15	[1.11-1.20]	Affymetrix [710030]	N
1075	chr11	64334113	64334114	rs2078267	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	11q13.1	SLC22A11	rs2078267-C	0.45	2E-37		1.28	[1.24-1.33]	Affymetrix [710030]	N
1075	chr11	64334113	64334114	rs2078267	32363570	Giri AK	2020-05-04	Mol Genet Genomics	Multifaceted genome-wide study identifies novel regulatory loci in SLC22A11 and ZNF45 for body mass index in Indians.	Body mass index	1,142 Indo-European Indian ancestry individuals	6,117 Indo-European Indian ancestry individuals	11q13.1	SLC22A11	rs2078267-A	0.41	5E-8		0.45	[0.29-0.61] unit increase	Illumina [537246]	N
1075	chr11	64334113	64334114	rs2078267	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	SLC22A11	rs2078267-T	0.4088	2E-15	(South Asian)	0.1607	[0.12-0.2] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	26902266	Giri AK	2016-02-23	Sci Rep	Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.	Serum uric acid levels	1,109 Indo-European ancestry individuals	3,725 Indo-European ancestry individuals	11q13.1	SLC22A11	rs2078267-A	NR	3E-11		10.54	[7.43-13.66] unit decrease	Illumina [539662]	N
1075	chr11	64334113	64334114	rs2078267	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q13.1	SLC22A11	rs2078267-C	0.49	7E-7	(men)	0.072	[0.045-0.099] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q13.1	SLC22A11	rs2078267-C	0.49	1E-10		0.071	[0.049-0.093] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	11q13.1	SLC22A11	rs2078267-C	0.49	7E-8		0.064	[0.040-0.088] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	11q13.1	SLC22A11	rs2078267-C	0.49	6E-8	(women)	0.078	[0.051-0.105] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	SLC22A11	rs2078267-T	0.51	9E-38		0.073	[0.061-0.085] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	11q13.1	SLC22A11	rs2078267-C	0.46	2E-26	(Urate)	6.8	[5.55-8.05] umol/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1075	chr11	64334113	64334114	rs2078267	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	11q13.1	SLC22A11	rs2078267-C	0.46	1E-6	(Gout)	1.26	[1.14-1.38]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1075	chr11	64345987	64345988	rs78556383	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs78556383-?	NR	3E-20		0.1234	[0.097-0.15] unit increase novel	Illumina [6108953] (imputed)	N
1075	chr11	64352062	64352063	rs531763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q13.1		rs531763-G	NR	1E-10		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1075	chr11	64352062	64352063	rs531763	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	SLC22A12	rs531763-A	0.5648	2E-246		0.1162	[0.11-0.12] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1075	chr11	64352062	64352063	rs531763	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs531763-A	0.47	1E-111	(men)	0.1267	[0.12-0.14] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1075	chr11	64352062	64352063	rs531763	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs531763-A	0.4351	1E-84	(women)	0.0986	[0.089-0.109] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1075	chr11	64354794	64354795	rs11231824	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	11q13.1	SLC22A12	rs11231824-C	0.111	7E-7		1.51	[1.3-1.76]	Illumina [580483] (imputed)	N
1076	chr11	64357071	64357072	rs505802	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	11q13.1	SLC22A11, SLC22A12	rs505802-T	0.742	7E-31	(EA)	0.04857143	[0.04-0.057] unit decrease	Illumina [1986983] (imputed)	N
1076	chr11	64357071	64357072	rs505802	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	11q13.1	SLC22A11, SLC22A12	rs505802-T	0.1725	1E-300	(Japanese)	0.1974	[0.19-0.21] unit decrease	Illumina [1986983] (imputed)	N
1076	chr11	64357071	64357072	rs505802	26902266	Giri AK	2016-02-23	Sci Rep	Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.	Serum uric acid levels	1,109 Indo-European ancestry individuals	3,725 Indo-European ancestry individuals	11q13.1	SLC22A12	rs505802-G	NR	5E-6		7.36	NR unit increase	Illumina [539662]	N
1076	chr11	64357071	64357072	rs505802	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q13.1	SLC22A12, NRXN2	rs505802-C	0.32	1E-9	(men)	0.095	[0.064-0.126] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1076	chr11	64357071	64357072	rs505802	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	11q13.1	SLC22A12	rs505802-T	0.70	2E-9		0.06	[0.038-0.074] mg/dl decrease	Affymetrix, Illumina [2493963] (imputed)	N
1076	chr11	64358099	64358100	rs67048806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs67048806-A	NR	4E-10		0.0342	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr11	64358264	64358265	rs524023	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	11q13.1	SLC22A12, NRXN2	rs524023-C	0.7	2E-6		0.093	[0.054-0.132] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1076	chr11	64359068	64359069	rs1372078992	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs1372078992-?	NR	3E-65		1.06973	[0.94-1.2] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64359078	64359079	rs72559738	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs72559738-?	NR	8E-20		0.939655	[0.73-1.15] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64359220	64359221	rs12800450	21768215	Tin A	2011-07-18	Hum Mol Genet	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	SLC22A12	rs12800450-T	0.01	3E-16	(AA)	1.19	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
1076	chr11	64359301	64359302	rs144328876	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs144328876-?	NR	3E-152		1.34062	[1.24-1.44] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64360259	64360260	rs149722479	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs149722479-?	NR	8E-65		1.69346	[1.49-1.89] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64360259	64360260	rs149722479	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	11q13.1	SLC22A12	rs149722479-?	8.97845E-4	2E-16				Illumina [~ 244000]	N
1076	chr11	64360278	64360279	rs148915713	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs148915713-?	NR	9E-165		1.66116	[1.54-1.78] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64360622	64360623	rs576076	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs576076-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1076	chr11	64360704	64360705	rs10897518	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	11q13.1	SLC22A12	rs10897518-C		4E-36		0.074	[0.062-0.086] mg/dl increase	NR [NR] (imputed)	N
1076	chr11	64360704	64360705	rs10897518	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q13.1	SLC22A12, NRXN2	rs10897518-C	0.32	9E-14		0.089	[0.065-0.113] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1076	chr11	64360704	64360705	rs10897518	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	11q13.1	SLC22A12, NRXN2	rs10897518-C	0.32	1E-6		0.06	[0.036-0.084] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1076	chr11	64361027	64361028	rs747987531	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs747987531-?	NR	3E-21		1.79456	[1.41-2.17] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64361218	64361219	rs121907892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q13.1		rs121907892-A	NR	2E-1947		1.1626	[1.14-1.19] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1076	chr11	64361218	64361219	rs121907892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	11q13.1		rs121907892-A	0.020145	5E-1948		1.16285	[1.14-1.19] unit decrease	Illumina [13475706] (imputed)	N
1076	chr11	64361218	64361219	rs121907892	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	SLC22A12	rs121907892-A	0.009484	7E-54		1.1511	[1.01-1.3] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1076	chr11	64361218	64361219	rs121907892	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	11q13.1	SLC22A12	rs121907892-?	0.028930567	2E-16				Illumina [~ 244000]	N
1076	chr11	64367151	64367152	rs201322494	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs201322494-?	NR	3E-112		1.1141	[1.01-1.21] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64367361	64367362	rs139140123	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs139140123-?	NR	5E-24		1.31629	[1.05-1.58] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64367588	64367589	rs2022051	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q13.1	SLC22A12	rs2022051-A	0.7934	5E-48		0.070369	[0.061-0.08] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1076	chr11	64367852	64367853	rs145200251	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs145200251-?	NR	3E-19		1.41141	[1.1-1.72] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64367852	64367853	rs145200251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs145200251-T	NR	2E-14		0.6868	[0.51-0.86] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr11	64367853	64367854	rs147647315	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs147647315-?	NR	4E-40		0.85738	[0.73-0.99] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64367853	64367854	rs147647315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs147647315-A	NR	5E-49		0.7039	[0.61-0.8] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr11	64367853	64367854	rs147647315	31841133	Chen G	2019-12-16	Hum Mol Genet	Refining genome-wide associated loci for serum uric acid in individuals with African ancestry.	Serum uric acid levels	4,126 African ancestry individuals, 5,007 African American individuals	NA	11q13.1		rs147647315-?	NR	7E-25		0.6275	unit decrease	Affymetrix, Illumina [up to 18219730] (imputed)	N
1076	chr11	64367853	64367854	rs147647315	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	SLC22A12	rs147647315-A	0.0151	1E-101	(AA)	1.1467	[1.04-1.25] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1076	chr11	64367901	64367902	rs201423508	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs201423508-?	NR	7E-70		1.29622	[1.15-1.44] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64368211	64368212	rs200104135	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs200104135-?	NR	9E-25		1.23441	[0.99-1.48] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64368234	64368235	rs971659587	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs971659587-?	NR	2E-10		1.41465	[0.96-1.87] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64368270	64368271	rs763684449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.1		rs763684449-?	NR	6E-10		0.663601	[0.45-0.88] unit decrease	NR [9800000] (imputed)	N
1076	chr11	64379581	64379582	rs111974056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs111974056-T	NR	1E-13		0.0447	[0.033-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr11	64392243	64392244	rs146047330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q13.1	NRXN2	rs146047330-T	0.00301200000000001	1E-14		0.16782093	[0.13-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1076	chr11	64392243	64392244	rs146047330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs146047330-T	0.0031595	3E-19				Affymetrix, Illumina [23472807] (imputed)	N
1076	chr11	64392243	64392244	rs146047330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q13.1	NR	rs146047330-T	0.003182	2E-20		0.177611	[0.14-0.22] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1076	chr11	64424966	64424967	rs57633992	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	11q13.1	NRXN2	rs57633992-A	0.054	1E-300	(Japanese)	0.668	[0.65-0.69] unit decrease	Illumina [5864938] (imputed)	N
1076	chr11	64424966	64424967	rs57633992	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NRXN2	rs57633992-?	NR	7E-845		0.6648	[0.64-0.69] unit decrease novel	Illumina [6108953] (imputed)	N
1076	chr11	64435905	64435906	rs2285340	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	11q13.1	SLC22A12	rs2285340-A	0.174	9E-10		1.44	[1.28-1.62]	Illumina [570442]	N
1076	chr11	64435905	64435906	rs2285340	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal overload gout	560 Japanese ancestry cases, 1,213 Japanese ancestry controls	618 Japanese ancestry cases, 1,268 Japanese ancestry controls	11q13.1	SLC22A12	rs2285340-A	0.174	2E-6		1.35	[1.19-1.52]	Illumina [570442]	N
1076	chr11	64435905	64435906	rs2285340	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	11q13.1	SLC22A12	rs2285340-A	0.174	5E-11	(Japanese)	1.4	[1.27-1.55]	Illumina [570442]	N
1076	chr11	64440919	64440920	rs506338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.1		rs506338-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1076	chr11	64440919	64440920	rs506338	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11q13.1	NR	rs506338-T	NR	9E-6		0.012	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1076	chr11	64440919	64440920	rs506338	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q13.1	NRXN2	rs506338-C	0.71	1E-8		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1076	chr11	64440919	64440920	rs506338	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	11q13.1	SLC22A12	rs506338-C	0.17	2E-31		0.229	[0.19-0.27] unit decrease	Illumina [561583]	N
1076	chr11	64456147	64456148	rs55908299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs55908299-A	NR	2E-22		0.0478	[0.038-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr11	64464084	64464085	rs504915	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	11q13.1	NRXN2	rs504915-?		2E-15		0.179	[0.13-0.22] unit decrease	Affymetrix [345072]	N
1076	chr11	64464084	64464085	rs504915	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	11q13.1	SLC22A12	rs504915-T	0.82	3E-63		0.2251	[0.20-0.25] mg/dl increase	Affymetrix, Illumina [2278301] (imputed)	N
1076	chr11	64465402	64465403	rs471618	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	11q13.1	NRXN2	rs471618-C	0.19	2E-18		1.23	[1.18-1.29]	Affymetrix [710030]	N
1076	chr11	64465402	64465403	rs471618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs471618-C	NR	2E-100		0.0642	[0.058-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr11	64466541	64466542	rs61884414	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11q13.1	NRXN2	rs61884414-G	0.0948	2E-6		0.0084	[0.0049-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
1076	chr11	64478062	64478063	rs478607	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	NRXN2, SLC22A12	rs478607-A	0.84	4E-11		0.047	[0.033-0.061] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1076	chr11	64480640	64480641	rs2518907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q13.1	Intergenic	rs2518907-G	0.2547	6E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1076	chr11	64480929	64480930	rs12273892	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11q13.1	NRXN2	rs12273892-A	0.8431	2E-9		0.0151	[0.01-0.02] unit increase	Illumina [246328]	N
1076	chr11	64481141	64481142	rs182094574	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q13.1	NRXN2	rs182094574-T	0.884	4E-6		0.102	NR unit increase	Illumina [NR] (imputed)	N
1076	chr11	64485192	64485193	rs61884449	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q13.1		rs61884449-C	0.853	3E-9		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1076	chr11	64485192	64485193	rs61884449	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q13.1	NR	rs61884449-T	0.149183	2E-8	(Conditioned on chr11:64133552)	0.019975293	[0.013-0.027] unit increase	NR [~ 10000000] (imputed)	N
1077	chr11	64496744	64496745	rs72927040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs72927040-A	NR	5E-16		0.0545	[0.041-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr11	64515621	64515622	rs566653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs566653-A	NR	3E-10		0.0365	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64520254	64520255	rs7126110	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q13.1	NR	rs7126110-C	0.86	1E-72		0.0516	[0.046-0.057] unit decrease	NR [NR]	N
1077	chr11	64522065	64522066	rs625172	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs625172-?	NR	2E-11		0.02914	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1077	chr11	64525215	64525216	rs589691	21768215	Tin A	2011-07-18	Hum Mol Genet	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	intergenic	rs589691-T	0.33	9E-8	(AA)	0.15	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
1077	chr11	64526351	64526352	rs118038492	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs118038492-T	NR	8E-15		0.0716	[0.054-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr11	64527222	64527223	rs116987552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs116987552-A	NR	2E-16		0.1549	[0.12-0.19] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64540799	64540800	rs77231260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs77231260-C	NR	1E-13		0.0435	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr11	64543927	64543927	rs34514973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs34514973-GT	NR	4E-11		0.0269	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64543927	64543927	rs34514973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q13.1	SF1	rs34514973-GT	0.091902	2E-9		0.023374474	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr11	64546390	64546391	rs606458	21768215	Tin A	2011-07-18	Hum Mol Genet	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	PYGM, RASGRP2, CDC42BPG, NRXN2, MAP4K2, MEN1, SF1	rs606458-T	0.35	6E-11	(AA)	0.18	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
1077	chr11	64556116	64556117	rs117925626	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	MAP4K2	rs117925626-T	0.98884	3E-52		1.1051	[0.96-1.25] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1077	chr11	64557053	64557054	rs493573	21768215	Tin A	2011-07-18	Hum Mol Genet	Genome-wide association study for serum urate concentrations and gout among African Americans identifies genomic risk loci and a novel URAT1 loss-of-function allele.	Urate levels	8,651 African American individuals	1,996 African American individuals	11q13.1	MAP4K2	rs493573-A	0.03	2E-17	(AA)	0.8	[NR] mg/dl decrease	Affymetrix [NR] (imputed)	N
1077	chr11	64559897	64559898	rs10897526	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs10897526-C	NR	3E-56		0.0427	[0.037-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64576953	64576954	rs624975	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs624975-T	NR	2E-14		0.0311	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64581644	64581645	rs11231879	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	11q13.1	CDC42BPG, SLC22A12	rs11231879-G	0.295	8E-10		1.44	[1.28-1.62]	Illumina [7206774] (imputed)	N
1077	chr11	64581657	64581658	rs559566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs559566-A	NR	1E-33		0.029	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr11	64581745	64581746	rs75944694	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs75944694-T	NR	2E-30		0.0734	[0.061-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64584230	64584231	rs470763	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	11q13.1	intergenic	rs470763-G	NR	5E-6		0.113	[0.064-0.162] unit increase	Illumina [628922]	N
1077	chr11	64590853	64590854	rs116897249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs116897249-A	NR	2E-10		0.0419	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1077	chr11	64591214	64591215	rs78137874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs78137874-A	NR	7E-16		0.0641	[0.049-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64597200	64597201	rs55975541	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	11q13.1	CDC42BPG	rs55975541-A	0.172	4E-12	(dominant)	13.79	[9.9-17.68] umol/L decrease	Illumina [~ 244000]	N
1077	chr11	64599656	64599657	rs11607853	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.1	CDC42BPG	rs11607853-G	0.594891	7E-12	(arachidonoylcholine)	0.164	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
1077	chr11	64600001	64600002	rs494252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs494252-T	NR	1E-10		0.0241	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1077	chr11	64600910	64600911	rs71539681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.1	NR	rs71539681-T	NR	2E-9		0.0377	[0.025-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1078	chr11	64659836	64659837	rs7102350	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q13.1	NR	rs7102350-?	NR	2E-9				Affymetrix [NR]	N
1078	chr11	64661129	64661130	rs115352086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.1	NR	rs115352086-G	NR	4E-9		0.0468	[0.031-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1078	chr11	64680818	64680819	rs618006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.1		rs618006-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1078	chr11	64682924	64682925	rs188954228	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.1	ATG2A	rs188954228-C	0.998	3E-6	(AA)	0.263	unit increase	Illumina [NR] (imputed)	N
1078	chr11	64698812	64698813	rs150772085	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	PPP2R5B	rs150772085-C		7E-16		0.6871	[0.52-0.85] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1078	chr11	64731645	64731646	rs56719440	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.1	C11orf85	rs56719440-C	0.673423	4E-11	(1-palmitoyl-2-linoleoyl-GPE (16:0/18:2))	0.167	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1078	chr11	64736377	64736378	rs74365834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs74365834-?	NR	9E-18		0.07965	[0.061-0.098] unit increase novel	Illumina [6108953] (imputed)	N
1078	chr11	64736924	64736925	rs554561917	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11q13.1		rs554561917-C	NR	8E-6		0.797		Affymetrix, Illumina [62056310] (imputed)	N
1079	chr11	64771946	64771947	rs582580	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q13.1	NR	rs582580-G	NR	3E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1079	chr11	64773100	64773101	rs78287937	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs78287937-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1079	chr11	64804689	64804690	rs620981	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	11q13.1	NR	rs620981-?	NR	6E-7		0.0915668	[0.056-0.127] unit increase	NR [13958389] (imputed)	N
1079	chr11	64813684	64813685	rs36053340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs36053340-C	NR	2E-23		0.0543	[0.044-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1079	chr11	64814812	64814813	rs2458298	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	981 Latin American cases, 1,328 Latin American controls	NA	11q13.1		rs2458298-G	0.26	3E-8		0.9	[0.87-0.94]	Illumina [8218190] (imputed)	N
1079	chr11	64827707	64827708	rs144991069	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	11q13.1	OVOL1, MAP3K11	rs144991069-A	0.01	5E-13		1.91	[1.60-2.28]	Illumina [up to 7441713] (imputed)	N
1079	chr11	64828841	64828842	rs35661464	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q13.1	NAALADL1	rs35661464-T	0.252033	5E-10		0.0463799	[0.032-0.061] unit increase	Affymetrix [9463307] (imputed)	N
1079	chr11	64833290	64833291	rs471538	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella bivia abundance in stool	5,959 Finnish ancestry individuals	NA	11q13.1		rs471538-A	0.348881	3E-8		0.0692225	[0.045-0.094] unit decrease	Illumina [7980478] (imputed)	N
1079	chr11	64835414	64835415	rs3850946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q13.1		rs3850946-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1079	chr11	64844258	64844259	rs117904573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.1		rs117904573-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1079	chr11	64856482	64856483	rs55855381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.1	NR	rs55855381-A	NR	3E-11		0.0423	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1079	chr11	64860887	64860888	rs138158275	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	TMEM262, VPS51	rs138158275-A		5E-10		0.4416	[0.3-0.58] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1079	chr11	64867102	64867103	rs111513404	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q13.1	NR	rs111513404-?	NR	3E-8		5.539	NR z score decrease	Illumina [at least 830937] (imputed)	N
1079	chr11	64870778	64870779	rs1209621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs1209621-C	NR	4E-11		0.0304	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr11	64887489	64887490	rs9333585	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	11q13.1	NRXN-1	rs9333585-A		4E-8		0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1080	chr11	64892197	64892198	rs144908022	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	11q13.1	NR	rs144908022-G	0.01025	2E-18		1.61	[1.44-1.79]	Affymetrix, Illumina [7072771] (imputed)	N
1080	chr11	64904907	64904908	rs10895987	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q13.1	SYVN1, SPDYC, VPS51, TM7SF2, AP003068.9, MIR6751, MRPL49, RNU2-23P, HIGD1AP10, PDCL2P2, AP003068.18	rs10895987-T	0.2256281	1E-18	(EA, Calpain I)	0.4591	[0.36-0.56] unit decrease	Affymetrix [509946]	N
1080	chr11	64908061	64908062	rs11227126	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	11q13.1	SYVN1	rs11227126-?	NR	2E-6		1.12	[1.07-1.18]	NR [7424691] (imputed)	N
1080	chr11	64931963	64931964	rs11227136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.1	AP003068.17	rs11227136-A	0.240655	7E-13		0.019406922	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr11	64935750	64935751	rs6591177	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q13.1	NR	rs6591177-?	NR	6E-7				Affymetrix [NR]	N
1080	chr11	64947468	64947469	rs1129367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP003068.23	rs1129367-A	NR	2E-8		0.044626	[0.029-0.06] unit decrease	Affymetrix [321016] (imputed)	N
1080	chr11	64968103	64968104	rs34888828	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	CAPN1	rs34888828-A	0.1096	1E-23		0.0565	[0.046-0.067] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1080	chr11	64968103	64968104	rs34888828	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs34888828-A	0.1177	3E-24	(men)	0.0881	[0.071-0.105] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1080	chr11	64968103	64968104	rs34888828	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs34888828-A	0.1139	2E-6	(women)	0.0373	[0.022-0.053] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1080	chr11	64983702	64983703	rs239260	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11q13.1	SLC22A20	rs239260-?	NR	2E-8		0.02748	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1080	chr11	64983702	64983703	rs239260	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	11q13.1	SLC22A20	rs239260-?	NR	2E-9		0.02918	[0.02-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1080	chr11	65000477	65000478	rs2904978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11q13.1		rs2904978-T	0.687669	9E-11		0.0251932	[0.018-0.033] unit decrease	Illumina [13476266] (imputed)	N
1080	chr11	65000477	65000478	rs2904978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11q13.1		rs2904978-T	0.68758	1E-12		0.0280194	[0.02-0.036] unit decrease	Illumina [13476299] (imputed)	N
1080	chr11	65000477	65000478	rs2904978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11q13.1	NR	rs2904978-C	0.309056	3E-10		0.028182	[0.019-0.037] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1081	chr11	65039349	65039350	rs145695688	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	11q13.1		rs145695688-T	0.011151	6E-7		2.7107618	NR	Affymetrix [7846216] (imputed)	N
1081	chr11	65040435	65040436	rs601310	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	POLA2	rs601310-C	NR	5E-9		0.0190835	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1081	chr11	65040435	65040436	rs601310	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.1	POLA2	rs601310-T	0.7513	3E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix [18391927] (imputed)	N
1081	chr11	65040435	65040436	rs601310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.1		rs601310-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1081	chr11	65048273	65048274	rs55817236	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	POLA2	rs55817236-T	0.98773	2E-29		0.817	[0.67-0.96] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1081	chr11	65069274	65069275	rs655433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.1		rs655433-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1081	chr11	65086144	65086145	rs12269727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.1		rs12269727-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1081	chr11	65091608	65091609	rs2904967	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q13.1	CDC42EP2	rs2904967-A	0.1493	4E-9		0.02909107	[0.019-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1081	chr11	65091755	65091756	rs566422764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q13.1	NR	rs566422764-T	0.019708	1E-9		0.04898	[0.033-0.065] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1081	chr11	65092817	65092818	rs61646837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.1	CDC42EP2	rs61646837-A	0.757321	9E-22		0.0177043	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr11	65092817	65092818	rs61646837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.1	CDC42EP2	rs61646837-A	0.757339	5E-19		0.023437949	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr11	65109232	65109233	rs629710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.1	DPF2	rs629710-C	0.719837	8E-16		0.020036729	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr11	65115166	65115167	rs7950149	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	DPF2	rs7950149-T	0.6944	2E-9	(AA)	0.0832	[0.056-0.11] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1081	chr11	65141327	65141328	rs72643570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.1		rs72643570-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1082	chr11	65143891	65143892	rs34400381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs34400381-A	NR	3E-25		0.0685	[0.056-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr11	65143891	65143892	rs34400381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs34400381-A	NR	2E-26		0.0701	[0.057-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr11	65143891	65143892	rs34400381	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	11q13.1	RP11-867O8.5, SLC25A45	rs34400381-A	0.036074	3E-8		0.0903	[0.061-0.12] unit decrease	Illumina [24961484] (imputed)	N
1082	chr11	65143891	65143892	rs34400381	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	11q13.1	SLC25A45	rs34400381-A	0.043	2E-10		0.36	[0.25-0.47] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1082	chr11	65143891	65143892	rs34400381	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	11q13.1	NR	rs34400381-A	0.043	2E-6		0.269	[0.16-0.38] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1082	chr11	65144074	65144075	rs624307	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.1	SLC25A45	rs624307-T	0.0184069	1E-13	(N6,N6,N6-trimethyllysine)	0.628	[0.46-0.79] unit increase	Illumina [13039987] (imputed)	N
1082	chr11	65144074	65144075	rs624307	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.1	SLC25A45	rs624307-T	0.0184069	1E-13	(N6,N6,N6-trimethyllysine)	0.628	[0.46-0.79] unit increase	Illumina [13039987] (imputed)	N
1082	chr11	65147012	65147013	rs78829599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs78829599-T	NR	1E-11		0.0946	[0.067-0.122] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr11	65147012	65147013	rs78829599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs78829599-T	NR	4E-12		0.0967	[0.069-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr11	65161128	65161129	rs2073800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	FRMD8	rs2073800-C	NR	4E-8		0.0156325	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65161449	65161450	rs184521656	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	FRMD8	rs184521656-T	0.009763	1E-41		1.1107	[0.95-1.27] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1082	chr11	65161449	65161450	rs184521656	32271837	Im SW	2020-04-09	PLoS One	A population-specific low-frequency variant of SLC22A12 (p.W258*) explains nearby genome-wide association signals for serum uric acid concentrations among Koreans.	Serum uric acid levels	1,902 Korean ancestry males	2,912 Korean ancestry individuals	11q13.1	FRMD8	rs184521656-T	0.013	1E-28		0.99	[0.72-1.26] unit decrease	Illumina [4414664] (imputed)	N
1082	chr11	65164356	65164357	rs12417665	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	FRMD8	rs12417665-T	0.0708	7E-90	(East Asian)	0.2368	[0.21-0.26] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1082	chr11	65170599	65170600	rs10128627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q13.1		rs10128627-C	NR	9E-12		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1082	chr11	65173753	65173754	rs2904975	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q13.1	FRMD8	rs2904975-C	0.269661	2E-12		0.00312714	[0.0023-0.004] unit decrease	Affymetrix [13995440] (imputed)	N
1082	chr11	65173753	65173754	rs2904975	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q13.1	NR	rs2904975-T	NR	4E-9		0.0157	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr11	65176369	65176370	rs12799896	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q13.1	FRMD8	rs12799896-C	0.83	3E-13		7.32	z-score increase	Affymetrix [4312306] (imputed)	N
1082	chr11	65177171	65177172	rs79818300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs79818300-A	NR	2E-9		0.034	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1082	chr11	65179435	65179436	rs3741389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	FRMD8	rs3741389-T	NR	2E-9		0.0239181	[0.016-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1082	chr11	65197392	65197393	rs674485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	NEAT1	rs674485-G	NR	4E-12		0.0230319	[0.017-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1082	chr11	65197392	65197393	rs674485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	NEAT1	rs674485-G	NR	2E-13		0.0235347	[0.017-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65212121	65212122	rs3825071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q13.1		rs3825071-T	NR	6E-12		0.0174	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1082	chr11	65223539	65223543	rs140456847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.1	AP000769.1	rs140456847-C	0.343587	4E-14		0.018279254	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr11	65223911	65223912	rs1783210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP000769.1	rs1783210-C	NR	5E-9		0.0164542	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65225318	65225319	rs12808303	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	11q13.1	NEAT1	rs12808303-C	NR	4E-10		1.12	1.08-1.16	Affymetrix [at least 665500] (imputed)	N
1082	chr11	65228617	65228618	rs2105608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.1	AP000769.1	rs2105608-A	NR	4E-8		0.0187651	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1082	chr11	65229225	65229225	rs111535347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP000769.1	rs111535347-CAT	NR	2E-13		0.0312571	[0.023-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65229827	65229828	rs2508710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.1	AP000769.1	rs2508710-T	NR	7E-9		0.0236295	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1082	chr11	65244537	65244538	rs686320	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MALAT1	rs686320-C	0.1246	7E-8	(EA, women)	0.0381	[0.024-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1082	chr11	65244537	65244538	rs686320	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MALAT1	rs686320-C	0.1246	7E-12	(EA)	0.0379	[0.027-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1082	chr11	65244537	65244538	rs686320	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.1	MALAT1	rs686320-C	0.1246	6E-7	(EA,men)	0.0395	[0.024-0.055] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1082	chr11	65247726	65247727	rs34412377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	AP000769.1	rs34412377-A	NR	2E-10		0.0456532	[0.032-0.06] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65249144	65249145	rs17146964	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	11q13.1	SCYL1	rs17146964-G	0.20	4E-9		0.01	[0.01-0.02] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1082	chr11	65252476	65252477	rs34789990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MALAT1	rs34789990-T	NR	1E-12		0.0393169	[0.028-0.05] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65253799	65253800	rs587080	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q13.1	intergenic	rs587080-C	0.3356	2E-10		0.02472482	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr11	65257328	65257329	rs1152620	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs1152620-?	NR	2E-29		0.04811	[0.04-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1082	chr11	65260645	65260646	rs600231	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11q13.1	SCYL1	rs600231-A	0.7	4E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1082	chr11	65263000	65263001	rs3132742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	MALAT1	rs3132742-G	NR	9E-12		0.0207937	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1082	chr11	65263894	65263895	rs4102217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs4102217-C	0.188793	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
1082	chr11	65263894	65263895	rs4102217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q13.1	NR	rs4102217-C	0.196193	8E-12		0.016351	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1082	chr11	65263894	65263895	rs4102217	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	11q13.1	MALAT1	rs4102217-G	0.8	4E-6		1.1	NR	Affymetrix [at least 8002429] (imputed)	N
1082	chr11	65263894	65263895	rs4102217	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	11q13.1		rs4102217-G	NR	7E-6	(GLM)	1.2945	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1082	chr11	65273452	65273453	rs202070768	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	11q13.1		rs202070768-C	NR	1E-9				Illumina [1084750]	N
1083	chr11	65278460	65278461	rs10896012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs10896012-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65278460	65278461	rs10896012	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q13.1	NR	rs10896012-C	0.2178	9E-14		0.022403644	[0.017-0.028] unit increase	Affymetrix [10549349] (imputed)	N
1083	chr11	65278460	65278461	rs10896012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q13.1	NA	rs10896012-T	0.7853	2E-16		0.018	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr11	65278460	65278461	rs10896012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.1	NA	rs10896012-T	0.7849	1E-14		0.0162	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1083	chr11	65286515	65286516	rs7931311	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	11q13.1		rs7931311-C	0.22	2E-16		0.018	nmol/L decrease	NR [NR] (imputed)	N
1083	chr11	65286515	65286516	rs7931311	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q13.1		rs7931311-C	0.22	2E-10				NR [NR] (imputed)	N
1083	chr11	65286515	65286516	rs7931311	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q13.1		rs7931311-C	0.22	4E-10		0.011	% increase	NR [NR] (imputed)	N
1083	chr11	65294798	65294799	rs1783541	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.1	NR	rs1783541-C	0.7972	4E-17		0.0484	[0.037-0.06] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1083	chr11	65294798	65294799	rs1783541	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q13.1	MAP3K11	rs1783541-T	0.2035	2E-14		1.06	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1083	chr11	65294829	65294830	rs1787663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.1	SCYL1	rs1787663-A	NR	5E-8		0.0175975	[0.011-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1083	chr11	65294829	65294830	rs1787663	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs1787663-C	NR	2E-6				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65294829	65294830	rs1787663	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	11q13.1	NR	rs1787663-C	NR	6E-6				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65294829	65294830	rs1787663	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	11q13.1	NR	rs1787663-C	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	9E-12	(240 ms)	0.083437	[0.059-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	6E-12	(236 ms)	0.0840064	[0.06-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	6E-12	(232 ms)	0.0844157	[0.06-0.109] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	5E-9	(254 ms)	0.0705731	[0.046-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	5E-12	(226 ms)	0.084038	[0.06-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	3E-10	(248 ms)	0.0764092	[0.052-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	3E-10	(246 ms)	0.0761407	[0.052-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	2E-8	(256 ms)	0.0680581	[0.044-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	2E-12	(234 ms)	0.0871601	[0.063-0.112] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	2E-10	(250 ms)	0.0765941	[0.052-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	1E-9	(252 ms)	0.0736744	[0.049-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	1E-11	(242 ms)	0.0827406	[0.058-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65295180	65295181	rs36085849	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.1	SCYL1	rs36085849-C	0.945475	1E-11	(238 ms)	0.0825122	[0.058-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1083	chr11	65302892	65302893	rs947791	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q13.1	NA	rs947791-A	0.214	1E-14		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1083	chr11	65306603	65306604	rs536370608	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11q13.1		rs536370608-?	NR	6E-12		0.235907	[0.17-0.31] unit decrease	NR [9800000] (imputed)	N
1083	chr11	65309864	65309864	rs71923644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	LTBP3	rs71923644-TTC	NR	5E-9		0.0262647	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1083	chr11	65314829	65314830	rs58621819	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q13.1	NR	rs58621819-T	0.2097	2E-10		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
1083	chr11	65314829	65314830	rs58621819	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.1	LTBP3	rs58621819-A	0.783284	7E-26		0.0246651	[0.02-0.029] unit decrease	NR [13737936] (imputed)	N
1083	chr11	65320358	65320359	rs200733908	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	11q13.1		rs200733908-?	NR	8E-12		0.280886	[0.2-0.36] unit decrease	NR [9800000] (imputed)	N
1083	chr11	65322547	65322548	rs12270054	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q13.1	LTBP3	rs12270054-C	0.73	8E-9		5.78	z-score increase	Affymetrix [4311822] (imputed)	N
1083	chr11	65323724	65323725	rs10896015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q13.1		rs10896015-A	NR	1E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1083	chr11	65323724	65323725	rs10896015	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	11q13.1	NR	rs10896015-G	0.73	3E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1083	chr11	65323724	65323725	rs10896015	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	11q13.1	LTBP3	rs10896015-G	NR	8E-10	(additive)	1.09	[1.06-1.12]	Affymetrix, Illumina [11554240] (imputed)	N
1083	chr11	65325984	65325984	rs137899365	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	11q13.1		rs137899365-C	0.1466	3E-14		6.635		Illumina [7608150]	N
1083	chr11	65326153	65326154	rs12789028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q13.1	LTBP3	rs12789028-A	0.197471	2E-10		0.017651755	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65326153	65326154	rs12789028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.1	LTBP3	rs12789028-A	0.197453	4E-10		0.017594604	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65326153	65326154	rs12789028	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.1	NR	rs12789028-G	0.8198	4E-20		0.0459	[0.036-0.056] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1083	chr11	65326153	65326154	rs12789028	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11q13.1	LTBP3, SSSCA1-AS1	rs12789028-G	0.8	1E-25		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1083	chr11	65326153	65326154	rs12789028	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	11q13.1	SSSCA1	rs12789028-A	0.189	1E-10		0.019	[0.013-0.025] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1083	chr11	65332272	65332273	rs2510078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11q13.1		rs2510078-T	NR	2E-11		0.0587	[0.041-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1083	chr11	65332272	65332273	rs2510078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11q13.1		rs2510078-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1083	chr11	65334711	65334712	rs35111506	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11q13.1	NR	rs35111506-C	0.0576541	5E-8		0.08218717	[0.053-0.112] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1083	chr11	65334711	65334712	rs35111506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.1		rs35111506-C	0.9432	8E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1083	chr11	65334711	65334712	rs35111506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.1	Intergenic	rs35111506-C	0.9432	3E-9	(MTAG)	0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1083	chr11	65336818	65336819	rs3782089	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.1	SSSCA1	rs3782089-T	0.06	4E-13		0.058	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1083	chr11	65337250	65337251	rs1346	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11q13.1	ZNRD2, SSSCA1	rs1346-A	NR	4E-16		0.0762	unit increase	Illumina [15409056] (imputed)	N
1083	chr11	65337250	65337251	rs1346	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11q13.1	SSSCA1-AS1	rs1346-A	0.8	1E-13		0.00826	[0.0061-0.0104] unit increase	Affymetrix [at least 8002429] (imputed)	N
1083	chr11	65337250	65337251	rs1346	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	11q13.1	SSSCA1	rs1346-T	0.191	5E-14		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1083	chr11	65337250	65337251	rs1346	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.1		rs1346-?	NR	6E-23		0.0236382	[0.019-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1083	chr11	65337250	65337251	rs1346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	11q13.1	SSSCA1	rs1346-T	NR	8E-18		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	11q13.1	SSSCA1	rs1346-T	NR	3E-17	(EA)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	11q13.1	SSSCA1	rs1346-T	NR	9E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	11q13.1	SSSCA1	rs1346-T	NR	2E-12	(EA)	0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	11q13.1	SSSCA1	rs1346-A	0.8	2E-6		0.074	[0.043-0.105] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
1083	chr11	65337250	65337251	rs1346	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	11q13.1	SSSCA1	rs1346-T	0.19	7E-11	(EA)	0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	11q13.1	SSSCA1	rs1346-T	0.19	2E-9		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr11	65337250	65337251	rs1346	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	11q13.1	SSSCA1	rs1346-T	NR	5E-13		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr11	65339377	65339378	rs11227227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.1		rs11227227-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1083	chr11	65342980	65342981	rs67924081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q13.1		rs67924081-G	NR	1E-11		0.0512	[0.036-0.066] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1083	chr11	65342980	65342981	rs67924081	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	11q13.1		rs67924081-A	0.7385	2E-13		1.0964744	[1.069937729-1.123669366]	Affymetrix, Illumina [NR] (imputed)	N
1083	chr11	65349062	65349063	rs3741380	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11q13.1	EHBP1L1	rs3741380-A	0.47083	3E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1083	chr11	65349062	65349063	rs3741380	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q13.1	EHBP1L1	rs3741380-?	NR	2E-17		0.0418715	[0.032-0.052] unit increase	Illumina [4804024] (imputed)	N
1083	chr11	65349062	65349063	rs3741380	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs3741380-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65349062	65349063	rs3741380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.1		rs3741380-?	NR	5E-75				NR [~ 8900000] (imputed)	N
1083	chr11	65349062	65349063	rs3741380	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q13.1	EHBP1L1, FAM89B, SSSCA1	rs3741380-A	0.476	3E-10		0.041	[0.027-0.055] unit increase	Affymetrix [7947838] (imputed)	N
1083	chr11	65349755	65349756	rs6591182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q13.1		rs6591182-G	NR	1E-8		0.0478	[0.032-0.064] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1083	chr11	65349755	65349756	rs6591182	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	11q13.1	LTBP3, EHBP1L1	rs6591182-A	0.47	9E-7		0.54	[NR] unit increase	Illumina [324623]	N
1083	chr11	65351363	65351364	rs10160596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q13.1		rs10160596-A	NR	4E-14		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11q13.1		rs10160596-A	NR	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.265385	3E-61		0.04246862	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.265508	2E-24		0.0266838	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.265545	2E-15		0.0204847	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.265494	1E-34		0.031280268	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs10160596-A	0.231365	4E-19				Affymetrix, Illumina [21126107] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q13.1	NR	rs10160596-A	0.264147	1E-17		0.019576	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.1		rs10160596-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.1		rs10160596-?	NR	4E-43				NR [~ 8900000] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.2655	1E-11		0.02684833	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65351363	65351364	rs10160596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q13.1	EHBP1L1	rs10160596-A	0.2654	1E-11		0.02750078	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65352061	65352062	rs2298615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q13.1		rs2298615-T	NR	4E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1083	chr11	65352061	65352062	rs2298615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q13.1		rs2298615-T	NR	4E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1083	chr11	65352061	65352062	rs2298615	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q13.1	NR	rs2298615-T	0.2324	5E-12		0.00178	[0.0013-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1083	chr11	65353905	65353906	rs4601790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	EHBP1L1	rs4601790-G	NR	1E-10		0.0207935	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1083	chr11	65353905	65353906	rs4601790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs4601790-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1083	chr11	65353905	65353906	rs4601790	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure (age interaction)	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	11q13.1	EHBP1L1	rs4601790-G	0.27	6E-7	(EA, DBP)	0.0197	[0.012-0.028] mmHg decrease per 1 year increase in age	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr11	65353905	65353906	rs4601790	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure (age interaction)	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	11q13.1	EHBP1L1	rs4601790-G	0.27	3E-7	(EA, MAP)	0.022	[0.014-0.03] mmHg decrease per 1 year increase in age	Affymetrix, Illumina [~ 2500000] (imputed)	N
1083	chr11	65354149	65354150	rs11227229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11q13.1		rs11227229-A	NR	1E-11		0.0532	[0.038-0.068] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1083	chr11	65354149	65354150	rs11227229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11q13.1		rs11227229-A	0.432447362	2E-9		0.08043606	[0.054-0.107] unit increase	Illumina [13426705] (imputed)	N
1083	chr11	65354149	65354150	rs11227229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11q13.1	EHBP1L1	rs11227229-A	0.4922	2E-17		0.03021258	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65354438	65354439	rs11606601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs11606601-C	0.50468	4E-68				Affymetrix, Illumina [22063850] (imputed)	N
1083	chr11	65354438	65354439	rs11606601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q13.1	NR	rs11606601-C	0.505263	2E-69		0.033971	[0.03-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1083	chr11	65354438	65354439	rs11606601	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11q13.1	EHBP1L1	rs11606601-G	NR	1E-22		0.0385813	[0.031-0.046] unit decrease	Affymetrix [16832071] (imputed)	N
1083	chr11	65355649	65355650	rs61893788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	EHBP1L1	rs61893788-T	NR	2E-8		0.0203807	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1083	chr11	65355649	65355650	rs61893788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	EHBP1L1	rs61893788-T	NR	5E-9		0.0210072	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1083	chr11	65359909	65359910	rs4787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs4787-C	0.262378	2E-8		0.0258208	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1083	chr11	65360242	65360243	rs34278912	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	11q13.1	EHBP1L1, KCNK7	rs34278912-G	NR	5E-7		0.113952	[0.069-0.158] unit decrease	Illumina [at least 950000] (imputed)	N
1083	chr11	65361764	65361765	rs749112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q13.1		rs749112-C	NR	4E-9		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1083	chr11	65364384	65364385	rs111669836	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	11q13.1	MAP3K11	rs111669836-A	0.25	4E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1083	chr11	65364628	65364629	rs7941126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11q13.1		rs7941126-G	NR	2E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1083	chr11	65365076	65365077	rs12419237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q13.1		rs12419237-C	NR	4E-13		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1083	chr11	65368322	65368323	rs10791821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.1	NR	rs10791821-A	NR	8E-15		0.0222	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr11	65368322	65368323	rs10791821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs10791821-A	NR	1E-9		0.0164	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr11	65368322	65368323	rs10791821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs10791821-A	NR	1E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr11	65368322	65368323	rs10791821	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	11q13.1	MAP3K11	rs10791821-G	0.92	1E-7		1.57	[1.33-1.85]	Illumina [570442]	N
1083	chr11	65369239	65369240	rs34686164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q13.1	MAP3K11	rs34686164-C	0.4338	3E-18		0.03211671	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65369239	65369240	rs34686164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q13.1	MAP3K11	rs34686164-C	0.4338	1E-18		0.03253309	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65372122	65372123	rs117897057	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	MAP3K11	rs117897057-T	0.990795	1E-40		1.1089	[0.95-1.27] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1083	chr11	65372579	65372580	rs7130955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	MAP3K11	rs7130955-T	NR	2E-8		0.0164045	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1083	chr11	65380915	65380916	rs2004649	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.1		rs2004649-A	0.44	3E-17		8.46	z score increase	Affymetrix [9061022] (imputed)	N
1083	chr11	65380915	65380916	rs2004649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q13.1	MAP3K11	rs2004649-A	0.4249	7E-20		0.03334444	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr11	65383754	65383755	rs58950470	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q13.1	NR	rs58950470-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1083	chr11	65384726	65384727	rs12790427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q13.1	NR	rs12790427-T	0.4932	6E-11	(East Asian)	0.4152	[0.29-0.54] unit decrease	Illumina [6200000] (imputed)	N
1083	chr11	65384726	65384727	rs12790427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q13.1	NR	rs12790427-T	0.4931	1E-11	(East Asian)	0.3026	[0.21-0.39] unit decrease	Illumina [6200000] (imputed)	N
1083	chr11	65384726	65384727	rs12790427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q13.1	NR	rs12790427-T	0.4932	3E-10	(East Asian)	0.2531	[0.17-0.33] unit decrease	Illumina [6200000] (imputed)	N
1083	chr11	65387377	65387378	rs61744384	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	11q13.1	NR	rs61744384-T	0.5586	9E-22		1.12	[1.1-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
1083	chr11	65387377	65387378	rs61744384	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	11q13.1	OVOL1, MAP3K11	rs61744384-T	0.56	3E-11		1.16	[1.11-1.21]	Illumina [up to 7441713] (imputed)	N
1083	chr11	65389630	65389631	rs1144789	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q13.1		rs1144789-A	0.44	2E-11		6.71	z score increase	Affymetrix [9061022] (imputed)	N
1083	chr11	65389630	65389631	rs1144789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q13.1		rs1144789-G	0.616061738	2E-8		0.06785393	[0.044-0.092] unit decrease	Illumina [13427711] (imputed)	N
1083	chr11	65389630	65389631	rs1144789	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	11q13.1	NR	rs1144789-G		6E-6		0.0739	[0.042-0.106] SD units increase	NR [10700000] (imputed)	N
1083	chr11	65390478	65390479	rs150599115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q13.1		rs150599115-A	NR	1E-9		0.0527	[0.036-0.07] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1083	chr11	65390484	65390485	rs1151490	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q13.1	NR	rs1151490-A	0.4256	1E-12				NR [9056863] (imputed)	N
1083	chr11	65390484	65390485	rs1151490	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.1	PCNX3	rs1151490-A	0.42312	9E-17		0.0160437	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
1083	chr11	65390802	65390803	rs66864335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.1		rs66864335-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1083	chr11	65390802	65390803	rs66864335	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.1		rs66864335-?	NR	6E-33		0.028147	[0.023-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1083	chr11	65390802	65390803	rs66864335	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.1	PCNX3	rs66864335-G	0.776739	2E-6	(men)	0.02973	[0.018-0.042] unit increase	NR [17166351] (imputed)	N
1083	chr11	65390802	65390803	rs66864335	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.1	PCNX3	rs66864335-G	0.776527	3E-16		0.0325912	[0.025-0.04] unit increase	NR [17166351] (imputed)	N
1083	chr11	65390802	65390803	rs66864335	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.1	PCNX3	rs66864335-G	0.776341	7E-10	(women)	0.0337109	[0.023-0.045] unit increase	NR [17166351] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q13.1		rs12801636-A	NR	7E-15		0.0163	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	11q13.1		rs12801636-A	0.49946462	2E-8		0.04735902	[0.031-0.064] unit decrease	Illumina [13429980] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11q13.1	PCNXL3	rs12801636-G	0.73	2E-8		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11q13.1	PCNXL3	rs12801636-A	0.24	4E-8		0.41	[0.27-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	11q13.1	PCNXL3	rs12801636-A	0.2306	3E-7		0.4035	[0.25-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.1	NR	rs12801636-G	NR	4E-6		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.1	NR	rs12801636-G	NR	4E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11q13.1	MAP3K11, PCNXL3	rs12801636-A	0.2364	2E-11		0.0403	[0.029-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q13.1	MAP3K11, PCNXL3	rs12801636-A	0.2381	3E-11		0.0441	[0.031-0.057] unit decrease	NR [8041861] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q13.1	MAP3K11, PCNXL3	rs12801636-A	0.225	4E-8		0.0418	[0.027-0.057] unit decrease	NR [8041861] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	11q13.1	PCNX3	rs12801636-G	0.487	2E-7		6.47	[4.05-8.89] umol/L increase	Illumina [~ 244000]	N
1083	chr11	65391316	65391317	rs12801636	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q13.1	KAT5	rs12801636-A	0.224	4E-10	(Trans-ethnic initial)	0.0235	[0.015-0.032] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1083	chr11	65391316	65391317	rs12801636	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	11q13.1	PCNXL3	rs12801636-A	0.23152535386783	4E-11		0.35640684	[0.25-0.46] unit decrease	Illumina [247039]	N
1083	chr11	65391316	65391317	rs12801636	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q13.1	KAT5	rs12801636-A	0.23	3E-8		0.024	[NR] unit increase	NR [NR] (imputed)	N
1083	chr11	65394321	65394322	rs10896024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.1	PCNXL3	rs10896024-G	0.460022	1E-39		0.030633396	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr11	65394321	65394322	rs10896024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs10896024-A	0.543251	2E-50				Affymetrix, Illumina [17210439] (imputed)	N
1083	chr11	65394321	65394322	rs10896024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q13.1	NR	rs10896024-A	0.538796	1E-53		0.030681	[0.027-0.035] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1083	chr11	65394880	65394881	rs117574905	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	11q13.1		rs117574905-?	NR	5E-25		0.108197	[0.088-0.129] unit decrease	NR [9800000] (imputed)	N
1083	chr11	65403650	65403651	rs7114037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs7114037-A	NR	4E-16		0.0432	[0.033-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr11	65403650	65403651	rs7114037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.1	NR	rs7114037-A	NR	9E-10		0.0341	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr11	65403650	65403651	rs7114037	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	11q13.1	PCNXL3	rs7114037-C	0.9537	9E-6		0.0321	[0.018-0.046] unit increase	Affymetrix, Illumina [at least 228985]	N
1083	chr11	65403650	65403651	rs7114037	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	11q13.1	PCNXL3	rs7114037-C	0.9543	2E-8		0.0292	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 228985]	N
1083	chr11	65403650	65403651	rs7114037	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	11q13.1	PCNXL3	rs7114037-C	0.9495	3E-8		0.0291	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 228985]	N
1084	chr11	65405299	65405300	rs931127	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	11q13.1	PCNXL3	rs931127-G	0.703	7E-6		1.33	[1.18-1.48]	Illumina [580483] (imputed)	N
1084	chr11	65405532	65405533	rs537328386	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.1		rs537328386-?	NR	9E-15		0.105021	[0.078-0.132] unit increase	Affymetrix [20259828] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs2306363-G	0.793282	7E-11		0.0329663	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs2306363-G	0.793282	4E-10		0.031497	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.1		rs2306363-G	0.793284	2E-10		0.0319091	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q13.1		rs2306363-T	NR	2E-15		0.0181	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q13.1		rs2306363-T	NR	2E-17		0.0199	[0.015-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	SIPA1	rs2306363-T	NR	4E-10		0.0218642	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	SIPA1	rs2306363-T	NR	3E-10		0.0219449	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	SIPA1	rs2306363-T	NR	2E-11		0.0236406	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	SIPA1	rs2306363-T	NR	2E-10		0.0225082	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	11q13.1	SIPA1	rs2306363-?	NR	9E-10		0.0684222	[0.047-0.09] unit decrease	Illumina [19707525] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q13.1	SIPA1	rs2306363-T	0.206636	8E-13		0.01979511	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q13.1	SIPA1	rs2306363-T	0.206643	4E-15		0.021712836	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q13.1	SIPA1	rs2306363-T	0.206588	8E-34		0.03370358	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q13.1	SIPA1	rs2306363-T	0.206589	3E-9		0.0482761	[0.032-0.064] unit decrease	Affymetrix [9463307] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q13.1	SIPA1	rs2306363-T	0.205555	1E-13		0.055492785	[0.041-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.1		rs2306363-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q13.1	SIPA1	rs2306363-T	0.1937	5E-17		0.3618	[0.28-0.45] mmHg decrease	Affymetrix [NR] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q13.1	SIPA1	rs2306363-T	0.1948	3E-8		0.1782	[0.11-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.1	SIPA1	rs2306363-T	0.1834	5E-10		0.0227	[0.016-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.21	1E-20	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.2	4E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.19	2E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.19	8E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.19	3E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.19	2E-16	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11q13.1	SIPA1, PCNXL3	rs2306363-T	0.19	1E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.1	NR	rs2306363-G		2E-8		0.405	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.1	NR	rs2306363-G		2E-7	(EA)	0.416	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.1	NR	rs2306363-G		4E-13		0.355	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.1	NR	rs2306363-G		5E-7		0.164	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65405599	65405600	rs2306363	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.1	NR	rs2306363-G		6E-11		0.195	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65406868	65406869	rs3782086	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs3782086-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1084	chr11	65406868	65406869	rs3782086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.1		rs3782086-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q13.1	NR	rs3741378-C	0.86	6E-21		0.024	[0.019-0.029] unit increase	Affymetrix [2446094] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q13.1	NR	rs3741378-C	0.86	5E-8				Affymetrix [2446094] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q13.1	NR	rs3741378-T	0.144	1E-19		0.0224	[0.017-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q13.1	SIPA1, RELA	rs3741378-?	NR	8E-15				Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q13.1	SIPA1, RELA	rs3741378-?		1E-9				Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.1	SIPA1	rs3741378-C		7E-8		0.302	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.1	SIPA1	rs3741378-C		8E-6		0.152	unit increase	Affymetrix [at least 2696785] (imputed)	N
1084	chr11	65408936	65408937	rs3741378	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11q13.1	SIPA1	rs3741378-T	0.137	8E-9		0.486	[0.32-0.65] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1084	chr11	65412034	65412035	rs2448490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q13.1	SIPA1	rs2448490-A	0.3643	5E-14		0.02860245	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr11	65413854	65413855	rs36075068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	SIPA1	rs36075068-T	NR	3E-8		0.0436645	[0.028-0.059] unit decrease	Affymetrix [321016] (imputed)	N
1084	chr11	65417433	65417434	rs746429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs746429-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1084	chr11	65421338	65421339	rs11568304	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Sensation seeking	22,745 European ancestry individuals	NA	11q13.1	RELA	rs11568304-G	0.009	3E-7		0.237	[0.146-0.328] unit increase	Illumina [11434023] (imputed)	N
1084	chr11	65422852	65422853	rs11227247	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q13.1	RELA	rs11227247-A	0.865458	6E-9		0.017788	[0.012-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1084	chr11	65427567	65427568	rs732072	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.1	NR	rs732072-?	NR	4E-6	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1084	chr11	65429935	65429936	rs11820062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.1		rs11820062-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1084	chr11	65432186	65432187	rs10896028	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q13.1	RELA	rs10896028-A	0.6451	4E-33		0.047581	[0.04-0.055] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1084	chr11	65436887	65436888	rs12289836	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	11q13.1	RELA	rs12289836-A		9E-18		0.046	[0.036-0.056] mg/dl decrease	NR [NR] (imputed)	N
1084	chr11	65438344	65438345	rs11227250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs11227250-T	0.308168	7E-43				Affymetrix, Illumina [24588908] (imputed)	N
1084	chr11	65438344	65438345	rs11227250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.1	NR	rs11227250-T	0.364316	2E-42		0.026088	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1084	chr11	65439723	65439724	rs140914107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.1		rs140914107-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1084	chr11	65461157	65461158	rs11227260	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q13.1	KAT5	rs11227260-T	0.3507	2E-34		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1084	chr11	65462842	65462843	rs11227261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q13.1		rs11227261-G	NR	7E-29		0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1084	chr11	65463705	65463705	rs71036221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.1	RN7SL309P	rs71036221-CGTG	0.365899	5E-17		0.02106934	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr11	65467952	65467953	rs6591188	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q13.1	NR	rs6591188-T	0.659676	1E-8		0.0122875	[0.0081-0.0165] unit decrease	NR [NR]	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	4E-15		0.0337127	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290199	6E-11		0.0287799	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290195	3E-9		0.0253168	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-13		0.032169	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	4E-12		0.0304495	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-8		0.0238722	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	7E-15		0.0334188	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	6E-10		0.0275713	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	7E-11		0.0287951	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	7E-13		0.0313095	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-8		0.0239664	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	4E-8		0.02415	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q13.1		rs10750766-C	0.2902	1E-9		0.025704	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs10750766-C	0.2902	3E-9		0.0257657	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.1		rs10750766-C	0.2902	5E-11		0.0286254	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-13		0.0316835	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	1E-11		0.0295861	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	4E-8		0.0237872	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	1E-8		0.0249693	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290199	3E-10		0.0277309	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	7E-14		0.0323705	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-11		0.0295236	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	1E-14		0.0332992	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	8E-12		0.0296634	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-13		0.0314355	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	5E-13		0.0326197	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	1E-14		0.0328396	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290199	2E-11		0.0293176	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-15		0.0338672	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290219	2E-12		0.0307792	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-9		0.026146	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	4E-8		0.0224346	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	6E-15		0.0335216	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290199	1E-11		0.0294019	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	7E-13		0.0316791	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-15		0.0340624	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-8		0.0238947	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-10		0.0270939	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-9		0.0263706	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	3E-8		0.022816	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q13.1		rs10750766-C	0.290217	2E-9		0.0253418	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q13.1		rs10750766-A	NR	1E-12		0.0388	[0.028-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.1		rs10750766-A	0.709973	4E-11		0.016575681	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q13.1		rs10750766-A	0.710159	9E-39		0.03249106	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q13.1		rs10750766-A	0.710189	1E-27		0.026771018	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q13.1		rs10750766-A	0.710181	4E-30		0.02805228	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q13.1	KAT5	rs10750766-C	0.290043	4E-19		0.0195875	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.1	KAT5	rs10750766-C	0.290137	7E-19		0.018633	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q13.1	EHBP1L1	rs10750766-?	NR	2E-10		0.0183	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q13.1	NR	rs10750766-C	0.289046	2E-11		0.0220518	[0.015-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.1	KAT5	rs10750766-C	0.288515	6E-16		0.0172647	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q13.1	KAT5	rs10750766-A	0.7	1E-12	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q13.1	KAT5	rs10750766-A	0.71	1E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q13.1	KAT5	rs10750766-A	0.7	6E-11	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11q13.1	intergenic	rs10750766-A	0.7085	6E-20		0.03580632	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q13.1	intergenic	rs10750766-A	0.7085	1E-13		0.02931235	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr11	65473797	65473798	rs10750766	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q13.1	intergenic	rs10750766-A	0.7085	5E-15		0.03097515	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	9E-6				Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	2E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?		1E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	6E-9				Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	2E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	6E-8				Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65478892	65478893	rs72941051	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q13.1	KAT5, RNASEH2C	rs72941051-?	NR	1E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1084	chr11	65481521	65481522	rs4645915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.1		rs4645915-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1084	chr11	65481639	65481640	rs4645917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	KAT5	rs4645917-A	NR	1E-15		0.0340173	[0.026-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1084	chr11	65481639	65481640	rs4645917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	KAT5	rs4645917-A	NR	3E-16		0.0347488	[0.026-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1084	chr11	65481639	65481640	rs4645917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	KAT5	rs4645917-A	NR	6E-15		0.0334308	[0.025-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1084	chr11	65481639	65481640	rs4645917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	KAT5	rs4645917-A	NR	4E-14		0.0323941	[0.024-0.041] unit decrease	Affymetrix [321169] (imputed)	N
1084	chr11	65483369	65483370	rs75601653	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.1	KAT5	rs75601653-C	0.6799	2E-8		0.0171	[0.011-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1084	chr11	65485477	65485478	rs4645936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.1	NR	rs4645936-G	0.94743	4E-13		0.0131498	[0.0094-0.0169] unit increase	Affymetrix [16582909] (imputed)	N
1084	chr11	65485477	65485478	rs4645936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q13.1	NR	rs4645936-G	0.94732	4E-12		0.0175329	[0.012-0.023] unit increase	Affymetrix [16582621] (imputed)	N
1084	chr11	65485477	65485478	rs4645936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.1	NR	rs4645936-G	0.94743	9E-7		0.0104231	[0.0063-0.0145] unit increase	Affymetrix [16582965] (imputed)	N
1084	chr11	65485477	65485478	rs4645936	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q13.1	NR	rs4645936-G	0.94732	5E-8		0.0148114	[0.0094-0.0202] unit increase	Affymetrix [16582614] (imputed)	N
1084	chr11	65488555	65488556	rs12576766	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs12576766-?	NR	4E-22		0.06174	[0.049-0.074] unit increase novel	Illumina [6108953] (imputed)	N
1084	chr11	65489625	65489626	rs61893836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs61893836-G	NR	6E-10		0.0374	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr11	65489625	65489626	rs61893836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs61893836-G	NR	4E-9		0.0355	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1084	chr11	65489625	65489626	rs61893836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11q13.1	NR	rs61893836-G	NR	3E-11		0.0399	[0.028-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1084	chr11	65492482	65492483	rs75162774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11q13.1		rs75162774-A	NR	6E-10		0.0433	[0.03-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1084	chr11	65493205	65493206	rs72941069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	11q13.1		rs72941069-C	NR	4E-10		0.0662	[0.045-0.087] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1084	chr11	65493991	65493992	rs480989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q13.1		rs480989-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1084	chr11	65493991	65493992	rs480989	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q13.1	NR	rs480989-A	0.112221	5E-13		0.0353869	[0.026-0.045] unit increase	NR [19129689] (imputed)	N
1084	chr11	65494259	65494260	rs478304	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q13.1	RNASEH2C, AP5B1	rs478304-T	0.5173	1E-9		6.099	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1084	chr11	65494259	65494260	rs478304	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	11q13.1	AX746604, AX747517, BANF1, BC010924, C11orf68, CATSPER1, CCDC85B, CDC42EP2, CST6, CTSW, DPF2, DQ587981, DRAP1, EFEMP2, EHBP1L1, EIF1AD, FAM89B, FIBP, FOSL1, FRMD8, GAL3ST3, KAT5, KCNK7, MALAT1, MAP3K11, MascRNA_menRNA, MIR4489, MIR4690, MIR548AR, NEAT1, PACS1, PCNXL3, POLA2, RELA, RNASEH2C, SART1, SCYL1, SF3B2, SIPA1, SLC22A20, SLC25A45, SSSCA1, SSSCA1-AS1, TIGD3, TSGA10IP, U7, LTBP3, OVOL1, SNX32, CFL1, MUS81, AP5B1	rs478304-T	0.5518	3E-11		1.2	[1.11-1.29]	Illumina [7300000] (imputed)	N
1084	chr11	65494622	65494623	rs11227278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs11227278-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1084	chr11	65497557	65497558	rs1308020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	KRT8P26	rs1308020-A	NR	1E-14		0.022863	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1084	chr11	65497557	65497558	rs1308020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	KRT8P26	rs1308020-A	NR	6E-9		0.0172974	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1084	chr11	65504052	65504053	rs749848972	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	11q13.1		rs749848972-?	NR	4E-9		0.84	[0.79-0.89]	Illumina [9900441] (imputed)	N
1084	chr11	65504243	65504244	rs12223803	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q13.1	RNASEH2C, AP5B1	rs12223803-?	NR	1E-8		0.0282	[0.019-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	RNASEH2C	rs4014195-C	0.6884	7E-52		0.0512	[0.045-0.058] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs4014195-C	0.3094	9E-24	(women)	0.0494	[0.04-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.1	NR	rs4014195-C	0.3017	3E-19	(men)	0.0495	[0.039-0.06] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	11q13.1	RNASEH2C, AP5B1	rs4014195-C	0.656	4E-6		0.0108	[0.0061-0.0155] unit decrease	Affymetrix [11535925] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	11q13.1	AP5B1	rs4014195-C	0.64	3E-12		0.005	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	11q13.1	AP5B1	rs4014195-C	0.64	1E-11	(EA)	0.0055	[0.0039-0.0071] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1084	chr11	65506821	65506822	rs4014195	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	11q13.1	RNASEH2C, KAT5, OVOL1	rs4014195-G	0.35	1E-7	(eGFRcrea)	0.01	[0.006-0.010] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1084	chr11	65507042	65507042	rs375125008	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	11q13.1	KAT5-AP5B1	rs375125008-T	0.644	5E-20		0.504	[0.4-0.61] unit increase	Affymetrix [NR] (imputed)	N
1084	chr11	65508985	65508986	rs620088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q13.1		rs620088-A	NR	1E-15		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1084	chr11	65508985	65508986	rs620088	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q13.1	SLC25A45, FRMD8, SCYL1, LTBP3, SSSCA1, MAP3K11, PCNXL3, KAT5, RNASEH2C, AP5B1	rs620088-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
1084	chr11	65513106	65513107	rs593982	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11q13.1	OVOL1	rs593982-C	0.53	6E-7		1.23	[NR]	Illumina [606164]	N
1084	chr11	65524251	65524252	rs7123489	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	11q13.1	AP5B1	rs7123489-A	0.31	2E-11		1.0592	[1.0417-1.077]	Affymetrix, Illumina [9585923] (imputed)	N
1084	chr11	65524251	65524252	rs7123489	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11q13.1	AP5B1	rs7123489-A	0.3085	2E-11		0.0051	[0.0035-0.0067] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1084	chr11	65524251	65524252	rs7123489	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	11q13.1	MAP3K11, PCNXL3	rs7123489-C	0.7675	2E-20		9.273	NR z score increase	Illumina [26237160] (imputed)	N
1084	chr11	65524251	65524252	rs7123489	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11q13.1	RNASEH2C, AP5B1	rs7123489-?	NR	2E-9		0.03034	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1084	chr11	65535184	65535185	rs60307791	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	11q13.1	DKFZp761E198	rs60307791-G	0.331	2E-8		0.545	[0.35-0.74] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr11	65541214	65541215	rs2508303	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	11q13.1	AP5B1	rs2508303-A	0.4707	3E-6		0.0268	[0.016-0.038] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1085	chr11	65542297	65542298	rs494003	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	11q13.1	RNASEH2C	rs494003-A	0.19	6E-9		1.14	[1.09-1.19]	NR [6344733] (imputed)	N
1085	chr11	65542297	65542298	rs494003	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	11q13.1	RNASEH2C	rs494003-A	0.19	2E-6	(EA)	1.13	[1.07-1.19]	NR [6344733] (imputed)	N
1085	chr11	65542297	65542298	rs494003	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	11q13.1	OVOL1	rs494003-T		2E-6		1.13	[1.08-1.19]	Illumina [644674]	N
1085	chr11	65542738	65542739	rs489574	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11q13.1	RNASEH2C, DKFZp761E198	rs489574-?	NR	7E-6		1.1111112	[1.06-1.15]	Illumina [at least 5000000] (imputed)	N
1085	chr11	65546856	65546857	rs610037	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	11q13.1	AP5B1	rs610037-?		4E-11		1.11	1.06-1.12	Illumina [87827]	N
1085	chr11	65548558	65548562	rs201316070	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	AP5B1, OVOL1	rs201316070-?	NR	3E-9				Affymetrix, Illumina [18800000] (imputed)	N
1085	chr11	65548558	65548562	rs201316070	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q13.1	AP5B1, OVOL1	rs201316070-?	NR	3E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1085	chr11	65548558	65548562	rs201316070	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q13.1	AP5B1, OVOL1	rs201316070-?	NR	2E-9				Affymetrix, Illumina [18800000] (imputed)	N
1085	chr11	65548558	65548562	rs201316070	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q13.1	AP5B1, OVOL1	rs201316070-?		6E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1085	chr11	65549569	65549570	rs11227299	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	11q13.1	AP5B1	rs11227299-G	0.34	1E-15		1.18	[1.13-1.22]	Affymetrix [710030]	N
1085	chr11	65551647	65551648	rs11604462	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		11q13.1	RNASEH2C	rs11604462-A	NR	2E-9		0.006	[0.0042-0.0078] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1085	chr11	65551709	65551710	rs11604451	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11q13.1	RNASEH2C	rs11604451-T	0.249	6E-13		0.248	[0.038-0.458] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1085	chr11	65551956	65551957	rs479844	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	11q13.1	NR	rs479844-a	0.428	2E-12		0.93	[0.91-0.95]	Affymetrix, Illumina [16201029] (imputed)	N
1085	chr11	65551956	65551957	rs479844	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11q13.1	AP5B1, OVOL1	rs479844-G	0.554743498194534	8E-10		0.04032233	[0.027-0.053] unit increase	Affymetrix [35186738] (imputed)	N
1085	chr11	65551956	65551957	rs479844	33710309	Shadrina AS	2021-03-12	Hum Mol Genet	Multivariate genome-wide analysis of immunoglobulin G N-glycosylation identifies new loci pleiotropic with immune function.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	3,147 European ancestry individuals	11q13.1	OVOL1	rs479844-A	0.42	2E-13		0.02	[0.016-0.024] unit increase	NR [NR] (imputed)	N
1085	chr11	65551956	65551957	rs479844	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q13.1	OVOL1	rs479844-G	0.55	2E-22				NR [> 9500000] (imputed)	N
1085	chr11	65551956	65551957	rs479844	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q13.1	OVOL1	rs479844-G	0.54558	1E-18		1.0547837	[1.04237722311121-1.06733790161191]	NR [9572556] (imputed)	N
1085	chr11	65551956	65551957	rs479844	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q13.1	NR	rs479844-G	0.5547	6E-17		1.0511931	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
1085	chr11	65551956	65551957	rs479844	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11q13.1	AP5B1, OVOL1	rs479844-A	0.4453	4E-11				Affymetrix [15688218] (imputed)	N
1085	chr11	65551956	65551957	rs479844	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q13.1	NR	rs479844-G	0.5547	3E-17		1.0472301	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
1085	chr11	65551956	65551957	rs479844	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	11q13.1	AP5B1, OVOL1	rs479844-G	0.555	1E-11		1.106	[1.074-1.139]	Affymetrix [10894596] (imputed)	N
1085	chr11	65551956	65551957	rs479844	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	11q13.1	AP5B1, OVOL1	rs479844-G	0.555	1E-6		0.657	[0.39-0.92] unit decrease	Affymetrix [10894596] (imputed)	N
1085	chr11	65551956	65551957	rs479844	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	11q13.1	AP5B1, OVOL1	rs479844-G	0.552	5E-8		1.056	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1085	chr11	65551956	65551957	rs479844	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11q13.1	AP5B1, OVOL1	rs479844-?	NR	3E-23		1.075	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1085	chr11	65551956	65551957	rs479844	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q13.1	AP5B1, OVOL1	rs479844-G	NR	3E-14		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1085	chr11	65551956	65551957	rs479844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11q13.1		rs479844-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1085	chr11	65551956	65551957	rs479844	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q13.1	AP5B1, OVOL1	rs479844-G	0.57	2E-13		1.038	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1085	chr11	65551956	65551957	rs479844	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	11q13.1	AP5B1, OVOL1	rs479844-G	0.560	4E-10		1.25	[1.24-1.43]	Affymetrix, Illumina [1633153] (imputed)	N
1085	chr11	65551956	65551957	rs479844	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q13.1	OVOL1	rs479844-?	NR	2E-18	(EA, fixed effects)	1.1111112	[1.09-1.14]	Illumina [15539996] (imputed)	N
1085	chr11	65551956	65551957	rs479844	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	11q13.1	OVOL1	rs479844-G	0.56	1E-13		1.14	[1.10-1.18]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1085	chr11	65552117	65552118	rs948494	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11q13.1	OVOL1	rs948494-A	0.3553	2E-18	(EA)	0.0031	[0.0023-0.0039] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr11	65552117	65552118	rs948494	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11q13.1	OVOL1	rs948494-A	0.33	7E-25		0.0033	[0.0027-0.0039] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr11	65552153	65552154	rs948493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs948493-T	NR	5E-80		0.0476	[0.043-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1085	chr11	65552153	65552154	rs948493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs948493-T	NR	2E-26		0.0266	[0.022-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1085	chr11	65552153	65552154	rs948493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11q13.1	NR	rs948493-T	NR	1E-39		0.0331	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1085	chr11	65552153	65552154	rs948493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.1	NR	rs948493-T	NR	5E-26		0.0265	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1085	chr11	65552153	65552154	rs948493	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q13.1	MIR1234	rs948493-T	0.3306	2E-45		0.0033	[0.0027-0.0039] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1085	chr11	65552153	65552154	rs948493	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11q13.1	MIR1234	rs948493-T	0.1842	2E-8		0.0049	[0.0031-0.0067] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1085	chr11	65554501	65554502	rs11227302	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	11q13.1	DKFZp761E198, OVOL1	rs11227302-?	NR	3E-6		1.15	[1.08-1.21]	Illumina [at least 5000000] (imputed)	N
1085	chr11	65555523	65555524	rs10896045	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QPCT	5,360 Icelandic ancestry individuals	NA	11q13.1		rs10896045-A	0.3119	2E-17		0.171366	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1085	chr11	65555523	65555524	rs10896045	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q13.1	OVOL1	rs10896045-A	0.551	7E-26		1.168	[1.14-1.2]	Illumina [11270530] (imputed)	N
1085	chr11	65555523	65555524	rs10896045	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.1		rs10896045-?	NR	10E-9		0.0127838	[0.0084-0.0172] unit decrease	NR [6912294] (imputed)	N
1085	chr11	65555523	65555524	rs10896045	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.1	OVOL1	rs10896045-G	0.697	1E-11	(Protein shisa-3 homolog, SHISA3.7057.18.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1085	chr11	65557117	65557117	rs397823946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q13.1		rs397823946-TG	NR	1E-32		0.0214	[0.018-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1085	chr11	65557117	65557117	rs397823946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11q13.1		rs397823946-TG	0.168495	5E-9		0.0221533	[0.015-0.03] unit increase	Illumina [13478778] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11q13.1		rs10791824-G	0.5802	7E-27		1.13		Affymetrix, Illumina [9397031] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11q13.1		rs10791824-G	NR	6E-10		0.0942	[0.064-0.124] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	11q13.1		rs10791824-?	NR	9E-10		1.06	[1.04-1.09]	Illumina [5170515] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	11q13.1	OVOL1	rs10791824-G	0.575	2E-16		0.035	[0.027-0.043] unit decrease	NR [NR] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	11q13.1	OVOL1	rs10791824-G	0.575	2E-16		0.035	[0.027-0.043] unit decrease	NR [7647814] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.1	NR	rs10791824-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.1	NR	rs10791824-?	NR	7E-18				Affymetrix [~ 8270000] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q13.1	AP5B1, KAT5, MIR4489, OVOL1, OVOL1-AS1, RELA, RNASEH2C, SIPA1	rs10791824-G	0.566406	4E-11		1.0413305	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	11q13.1	AP5B1, OVOL1	rs10791824-?	0.5694	9E-10		1.1118523	[1.08-1.15]	Affymetrix [15688218] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q13.1		rs10791824-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1085	chr11	65559265	65559266	rs10791824	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q13.1	OVOL1	rs10791824-G	0.57	2E-19	(EA, fixed effects)	1.12	[1.09-1.15]	Illumina [15539996] (imputed)	N
1085	chr11	65560619	65560620	rs642803	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	11q13.1	OVOL1	rs642803-T	0.46447399	8E-7		0.153587	[0.093-0.215] unit decrease	Affymetrix [9463307] (imputed)	N
1085	chr11	65560619	65560620	rs642803	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	11q13.1	OVOL1	rs642803-T	0.46447399	8E-8		0.257621	[0.16-0.35] unit decrease	Affymetrix [9463307] (imputed)	N
1085	chr11	65560619	65560620	rs642803	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	11q13.1	OVOL1	rs642803-T	0.46447399	5E-11		0.00597245	[0.0042-0.0078] unit increase	Affymetrix [9463307] (imputed)	N
1085	chr11	65560619	65560620	rs642803	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	11q13.1	OVOL1	rs642803-T	0.4495	1E-24	(Japanese)	0.041	[0.033-0.049] unit decrease	Illumina [5864938] (imputed)	N
1085	chr11	65560619	65560620	rs642803	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.1	Intergenic	rs642803-T	0.4563	4E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr11	65560619	65560620	rs642803	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.1	Intergenic	rs642803-T	0.4583	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr11	65560619	65560620	rs642803	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q13.1	OVOL1, LTBP3	rs642803-T	0.46	3E-13		0.036	[0.026-0.045] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1085	chr11	65560784	65560785	rs3814707	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q13.1	NR	rs3814707-G	0.758298	6E-11		0.0195128	[0.014-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.1	NR	rs12797706-A	0.23460899999999996	3E-41		0.0135305	[0.012-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q13.1	NR	rs12797706-A	0.23457899999999998	2E-19		0.0129381	[0.01-0.016] unit increase	Affymetrix [16585854] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q13.1	NR	rs12797706-A	0.23463299999999998	1E-22		0.0131577	[0.01-0.016] unit increase	Affymetrix [16582621] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.1	NR	rs12797706-A	0.23460899999999996	1E-31		0.0131843	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q13.1	NR	rs12797706-A	0.23457899999999998	1E-16		0.0138698	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q13.1	NR	rs12797706-A	0.23463299999999998	6E-17		0.0120832	[0.0092-0.015] unit increase	Affymetrix [16582614] (imputed)	N
1085	chr11	65561368	65561369	rs12797706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.1		rs12797706-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1085	chr11	65561467	65561468	rs644740	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q13.1	NR	rs644740-T	0.457	3E-11		0.00719881	[0.0051-0.0093] unit decrease	NR [9732723] (imputed)	N
1085	chr11	65561467	65561468	rs644740	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q13.1	NR	rs644740-T	0.457	4E-8		0.014078517	[0.0091-0.0191] unit decrease	NR [~ 10000000] (imputed)	N
1085	chr11	65561467	65561468	rs644740	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q13.1	NR	rs644740-T	0.456	2E-9		0.00881013	[0.0059-0.0117] unit increase	NR [9732723] (imputed)	N
1085	chr11	65561804	65561805	rs56019505	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.1	OVOL1	rs56019505-G	0.14	3E-14		1.087	NR	Affymetrix [9154080] (imputed)	N
1085	chr11	65562256	65562257	rs2276133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	OVOL1	rs2276133-A	NR	3E-8		0.0181046	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1085	chr11	65565693	65565694	rs116948503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs116948503-A	NR	6E-14		0.0461	[0.034-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1085	chr11	65566718	65566719	rs557675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q13.1		rs557675-G	NR	6E-9		0.0508	[0.034-0.068] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1085	chr11	65566718	65566719	rs557675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11q13.1		rs557675-G	NR	2E-8		0.0356	[0.023-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1085	chr11	65566718	65566719	rs557675	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.1	OVOL1	rs557675-T	0.529569	2E-12		0.0138905	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1085	chr11	65566718	65566719	rs557675	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11q13.1	OVOL1	rs557675-G	0.47008	4E-8		0.04345571	[0.028-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
1085	chr11	65566718	65566719	rs557675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q13.1		rs557675-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1085	chr11	65569929	65569930	rs34509162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	OVOL1, RP11-770G2.5	rs34509162-T	NR	1E-8		0.0195202	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1085	chr11	65571523	65571524	rs575631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs575631-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1085	chr11	65577137	65577138	rs4930321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	OVOL1, RP11-770G2.5	rs4930321-A	NR	2E-12		0.0262564	[0.019-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1085	chr11	65578671	65578672	rs11227306	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	11q13.1	OVOL1, CFL1	rs11227306-A	0.38	2E-7	(IGF2-DMR)			Illumina [515966]	N
1085	chr11	65580637	65580638	rs12576996	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	11q13.1	OVOL1	rs12576996-G	0.244402	1E-10		0.08331564	[0.058-0.109] unit decrease	Affymetrix [7260263] (imputed)	N
1085	chr11	65580637	65580638	rs12576996	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q13.1	NR	rs12576996-T	0.75	2E-57		0.0338	[0.03-0.038] unit decrease	NR [NR]	N
1085	chr11	65580637	65580638	rs12576996	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	11q13.1	CFL1	rs12576996-T	0.753573	4E-11		1.07	[1.05-1.09]	Affymetrix [7600000] (imputed)	N
1085	chr11	65583065	65583066	rs3903072	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11q13.1		rs3903072-T	NR	6E-12		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1085	chr11	65583065	65583066	rs3903072	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.1	intergenic	rs3903072-G	0.53	2E-12	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1085	chr11	65583065	65583066	rs3903072	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	11q13.1	NR	rs3903072-G	0.53	3E-7		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1085	chr11	65583065	65583066	rs3903072	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11q13.1	NR	rs3903072-G	0.53	1E-10		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1085	chr11	65583065	65583066	rs3903072	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q13.1	DKFZp761E198, OVOL1, SNX32, CFL1, MUS81	rs3903072-G	0.53	9E-12		1.05	[1.04-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1085	chr11	65585256	65585257	rs11227311	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q13.1		rs11227311-?	NR	6E-6		0.951806	[0.93-0.97]	NR [685523]	N
1085	chr11	65588937	65588938	rs11227313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	CFL1	rs11227313-T	NR	2E-8		0.0165934	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1085	chr11	65593443	65593444	rs118086960	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	11q13.1	CFL1, FIBP, FOSL1	rs118086960-T	0.47	7E-9		1.12		Illumina, Perlegen [9113515] (imputed)	N
1085	chr11	65594138	65594139	rs11602769	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	11q13.1	OVOL1, SNX32	rs11602769-C	0.5	3E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [16531985] (imputed)	N
1085	chr11	65594819	65594820	rs7102454	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q13.1	SNX32, EFEMP2	rs7102454-C	0.352769	2E-8		0.015096	[0.0098-0.0204] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1085	chr11	65599655	65599656	rs77779142	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	11q13.1	OVOL1, SNX32	rs77779142-T	NR	1E-8		0.149773	[0.098-0.201] unit increase	Illumina [at least 950000] (imputed)	N
1085	chr11	65601559	65601560	rs17854357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q13.1		rs17854357-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1085	chr11	65602412	65602413	rs36124259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	CFL1, SNX32	rs36124259-G	NR	7E-12		0.0264227	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1085	chr11	65602412	65602413	rs36124259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	CFL1, SNX32	rs36124259-G	NR	4E-12		0.0268163	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1085	chr11	65603251	65603252	rs7107912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q13.1	SNX32, CFL1	rs7107912-A	0.507879	7E-18		0.019018658	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr11	65603251	65603252	rs7107912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs7107912-A	0.435368	6E-25				Affymetrix, Illumina [24649327] (imputed)	N
1085	chr11	65603251	65603252	rs7107912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q13.1	NR	rs7107912-A	0.509882	3E-25		0.019051	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1085	chr11	65604798	65604799	rs77291001	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	11q13.1	NR	rs77291001-G	0.01908	6E-6		0.5656	[-0.48418-1.61538] unit increase	Illumina [at least 567677] (imputed)	N
1085	chr11	65604861	65604862	rs7938011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	CFL1, SNX32	rs7938011-A	NR	2E-11		0.0240495	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1085	chr11	65607203	65607204	rs139892606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.1	SNX32, CFL1	rs139892606-C	0.389326	2E-10		0.016725482	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr11	65621293	65621293	rs2308219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q13.1	SNX32, CFL1	rs2308219-GCC	0.664665	4E-12		0.016294342	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr11	65623738	65623739	rs11227332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11q13.1	NR	rs11227332-G	NR	9E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1085	chr11	65625190	65625191	rs7947929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs7947929-A	0.610037	5E-13				Affymetrix, Illumina [23114412] (imputed)	N
1085	chr11	65625190	65625191	rs7947929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q13.1	NR	rs7947929-A	0.666489	1E-14		0.015723	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1085	chr11	65628333	65628334	rs13817	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q13.1		rs13817-G	0.33	5E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
1085	chr11	65628333	65628334	rs13817	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q13.1	NR	rs13817-G	0.3349	1E-10				NR [9056863] (imputed)	N
1085	chr11	65637075	65637076	rs570387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs570387-C	0.461252	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
1085	chr11	65637272	65637273	rs501630	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	11q13.1	NR	rs501630-G	0.5545	5E-6		0.1299	[0.074-0.186] unit decrease	Illumina [7305641] (imputed)	N
1085	chr11	65639373	65639374	rs2234458	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q13.1	EFEMP2	rs2234458-C	0.360457	3E-19		0.0128189	[0.01-0.016] unit increase	Affymetrix [12370749]	N
1085	chr11	65639373	65639374	rs2234458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.1		rs2234458-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1085	chr11	65640203	65640204	rs2303384	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q13.1	EFEMP2	rs2303384-C	0.359636	3E-18		0.0127037	[0.0098-0.0156] unit increase	Affymetrix [12370749]	N
1085	chr11	65640561	65640562	rs2303385	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	11q13.1	EFEMP2	rs2303385-?	0.639	1E-6		1.1230155	[1.07-1.18]	Affymetrix, Illumina [7701827] (imputed)	N
1085	chr11	65641032	65641033	rs10896064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q13.1		rs10896064-C	NR	2E-40		0.0223	[0.019-0.026] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1085	chr11	65641032	65641033	rs10896064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q13.1	NR	rs10896064-C	0.532468	8E-11		0.013348	[0.0093-0.0174] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1085	chr11	65641032	65641033	rs10896064	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	11q13.1	CFL1	rs10896064-G	0.463151	2E-13		1.0638298	[1.04-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1085	chr11	65641930	65641931	rs625652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q13.1		rs625652-A	NR	3E-18		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1085	chr11	65644362	65644363	rs679147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.1	EFEMP2, CTSW	rs679147-A	0.334513	7E-14		0.017624369	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr11	65653241	65653242	rs568617	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q13.1	FIBP	rs568617-?	NR	4E-8	(subset analysis)			Illumina [130052]	N
1085	chr11	65653241	65653242	rs568617	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.1	NR	rs568617-A	0.1883	2E-8	(EA)	1.0888312	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1085	chr11	65655259	65655259	rs2308217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q13.1	NR	rs2308217-I	0.800064	3E-16		0.020565	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1085	chr11	65656563	65656564	rs2231884	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.1	RELA, FOSL1, SNX32, CTSW	rs2231884-T	0.157	3E-10		1.083	[1.044-1.122]	Affymetrix, Illumina [1230000] (imputed)	N
1085	chr11	65657092	65657093	rs55715348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.1	CCDC85B	rs55715348-G	NR	3E-10		0.0401742	[0.028-0.053] unit decrease	Affymetrix [321016] (imputed)	N
1085	chr11	65661290	65661291	rs10791830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.1	FOSL1	rs10791830-T	NR	2E-8		0.0217424	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1085	chr11	65661290	65661291	rs10791830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.1	NR	rs10791830-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1085	chr11	65661290	65661291	rs10791830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.1		rs10791830-T	0.1947	6E-12	(conditional-joint)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1085	chr11	65663238	65663239	rs622614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs622614-C	0.767784	4E-14				Affymetrix, Illumina [23467995] (imputed)	N
1085	chr11	65663546	65663547	rs585557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.1		rs585557-A	0.8014	3E-13		0.0128	[0.0093-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1085	chr11	65663546	65663547	rs585557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.1	Intergenic	rs585557-A	0.8014	4E-13	(MTAG)	0.0119	[0.0088-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr11	65663605	65663606	rs72924800	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11q13.1	FOSL1, CCDC85B, FIBP, CTSW, C11orf68, DRAP1	rs72924800-G	0.8712	2E-9		1.0580555	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
1085	chr11	65664345	65664346	rs637571	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q13.1	FOSL1	rs637571-C	0.4512	3E-17		0.03053125	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1085	chr11	65665199	65665200	rs1151523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.1		rs1151523-?	NR	1E-46				NR [~ 8900000] (imputed)	N
1085	chr11	65665255	65665256	rs634534	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11q13.1		rs634534-A	0.457	4E-23				Affymetrix [10369434] (imputed)	N
1085	chr11	65665255	65665256	rs634534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.1	NR	rs634534-G	0.490788	4E-62				Affymetrix, Illumina [19872809] (imputed)	N
1085	chr11	65665255	65665256	rs634534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q13.1	NR	rs634534-G	0.542475	6E-61		0.032917	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1085	chr11	65665255	65665256	rs634534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q13.1	FOSL1	rs634534-G	0.5409	4E-22		0.03499014	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr11	65665255	65665256	rs634534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q13.1	FOSL1	rs634534-G	0.5409	7E-24		0.0363658	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr11	65665987	65665988	rs689274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.1	FOSL1	rs689274-G	0.543093	4E-38		0.028777573	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr11	65665987	65665988	rs689274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.1	FOSL1	rs689274-G	0.543049	5E-47		0.032391153	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1086	chr11	65679834	65679835	rs601100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q13.1	NR	rs601100-A	NR	2E-11		0.0223	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1086	chr11	65679834	65679835	rs601100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs601100-A	NR	4E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1086	chr11	65681964	65681965	rs526631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q13.1	DRAP1	rs526631-G	0.5405	5E-14		0.02716644	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1086	chr11	65681964	65681965	rs526631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q13.1	DRAP1	rs526631-G	0.5405	7E-16		0.02907564	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1086	chr11	65701458	65701459	rs9795139	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.1	TSGA10IP	rs9795139-T	0.0248	2E-271	(East Asian)	0.7923	[0.75-0.84] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1086	chr11	65701458	65701459	rs9795139	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	11q13.1	NR	rs9795139-?	NR	1E-363		0.6342	[0.6-0.66] unit decrease novel	Illumina [6108953] (imputed)	N
1086	chr11	65702522	65702523	rs617791	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.1	NR	rs617791-C	0.501	7E-6	(EA)	0.0281	[0.016-0.04] unit decrease	Illumina [~ 11800000] (imputed)	N
1086	chr11	65705107	65705108	rs528736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q13.1		rs528736-G	NR	7E-11		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1086	chr11	65705431	65705432	rs531612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q13.1		rs531612-T	0.508518	3E-9		0.013193542	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1086	chr11	65705431	65705432	rs531612	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q13.1	DRAP1	rs531612-T	NR	1E-9		1.0689471	NR	Affymetrix, Illumina [8278136] (imputed)	N
1086	chr11	65705431	65705432	rs531612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q13.1		rs531612-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1086	chr11	65715203	65715204	rs71455793	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.1	TSGA10IP, BANF1, CATSPER1, CST6, EIF1AD, GAL3ST3, PACS1, SART1, SF3B2	rs71455793-A	0.043562	1E-7		0.01871	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1086	chr11	65715203	65715204	rs71455793	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.1	BANF1, CATSPER1, CST6, EIF1AD, GAL3ST3, PACS1, SART1, SF3B2, TSGA10IP	rs71455793-A	0.043562	8E-12	(females)	0.0393	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1086	chr11	65715203	65715204	rs71455793	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.1	BANF1, CATSPER1, CST6, EIF1AD, GAL3ST3, PACS1, SART1, SF3B2, TSGA10IP	rs71455793-A	0.043562	8E-6		0.01515	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1086	chr11	65715203	65715204	rs71455793	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.1	BANF1, CATSPER1, CST6, EIF1AD, GAL3ST3, PACS1, SART1, SF3B2, TSGA10IP	rs71455793-A	0.043562	3E-9	(females)	0.03495	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1086	chr11	65718002	65718003	rs11607341	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs11607341-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1086	chr11	65724436	65724437	rs72926898	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST6	5,367 Icelandic ancestry individuals	NA	11q13.1		rs72926898-C	0.02157	5E-19		0.536711	[0.42-0.65] unit increase	Illumina [7506463] (imputed)	N
1086	chr11	65727798	65727799	rs593525	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q13.1		rs593525-?	NR	4E-6		1.05129	[1.03-1.07]	NR [685523]	N
1086	chr11	65728676	65728676	rs5792377	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.1		rs5792377-?	NR	1E-9		0.0136392	[0.0087-0.0186] unit increase	Affymetrix [20259828] (imputed)	N
1086	chr11	65730944	65730945	rs1192168	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	11q13.1		rs1192168-?	NR	7E-7		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [10661418] (imputed)	N
1086	chr11	65740467	65740468	rs10896070	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	11q13.1		rs10896070-?	NR	3E-6		0.04	[0.02-0.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr11	65742282	65742283	rs60109456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs60109456-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1086	chr11	65744264	65744265	rs2276016	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.1	NR	rs2276016-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1086	chr11	65747056	65747057	rs754532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.1	NR	rs754532-A	NR	2E-12		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1086	chr11	65747056	65747057	rs754532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.1		rs754532-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1086	chr11	65749644	65749645	rs551659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	RP11-1167A19.6	rs551659-T	NR	3E-9		0.0171218	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1086	chr11	65765724	65765725	rs117625825	32271837	Im SW	2020-04-09	PLoS One	A population-specific low-frequency variant of SLC22A12 (p.W258*) explains nearby genome-wide association signals for serum uric acid concentrations among Koreans.	Serum uric acid levels	1,902 Korean ancestry males	2,912 Korean ancestry individuals	11q13.1	EIF1AD	rs117625825-A	0.015	2E-20		0.84	[0.59-1.09] unit decrease	Illumina [4414664] (imputed)	N
1086	chr11	65768092	65768093	rs3825068	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.1	CST6	rs3825068-G	0.028	4E-14	(Cystatin-M, CST6.14711.27.3)	0.57	[0.41-0.73] unit increase	Affymetrix [10572788] (imputed)	N
1086	chr11	65768092	65768093	rs3825068	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.1	CST6	rs3825068-G	0.028	3E-15	(Cystatin-M, CST6.3303.23.2)	0.6	[0.44-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1086	chr11	65771666	65771667	rs185542523	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	11q13.1	NR	rs185542523-T	0.02045	1E-6		0.8012	[-0.21643-1.81883] unit increase	Illumina [at least 567677] (imputed)	N
1086	chr11	65774130	65774131	rs76541013	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.1	BANF1, CST6	rs76541013-A	0.04338	2E-11		0.2699	[0.19-0.35] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1086	chr11	65777309	65777310	rs35911045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q13.1		rs35911045-C	0.696	6E-12		0.0150729	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1086	chr11	65780242	65780243	rs72930985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST6	5,368 Icelandic ancestry individuals	NA	11q13.1		rs72930985-A	0.0206	1E-17		0.524507	[0.4-0.64] unit increase	Illumina [7506463] (imputed)	N
1086	chr11	65781458	65781459	rs12785292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.1	CST6	rs12785292-A	NR	3E-9		0.0213641	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1086	chr11	65781458	65781459	rs12785292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.1	CST6	rs12785292-A	NR	4E-10		0.022549	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1086	chr11	65781458	65781459	rs12785292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.1	CST6	rs12785292-A	NR	3E-15		0.0286722	[0.022-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1086	chr11	65781458	65781459	rs12785292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.1	CST6	rs12785292-A	NR	1E-9		0.0221882	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1086	chr11	65782621	65782622	rs684546	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.1	CST6, CATSPER1	rs684546-?	NR	2E-14		0.023666032	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
1086	chr11	65783914	65783915	rs668210	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	11q13.1	NR	rs668210-?	NR	3E-9	(Cystatin-M)			Illumina [514227]	N
1086	chr11	65789136	65789137	rs34114713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.1	NR	rs34114713-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1087	chr11	65810611	65810612	rs35285455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.1		rs35285455-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1087	chr11	65825455	65825458	rs376356384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11q13.1		rs376356384-A	NR	5E-11		0.0194	[0.014-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1087	chr11	65825455	65825458	rs376356384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q13.1	NR	rs376356384-A	NR	5E-10		0.0182	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1087	chr11	65829636	65829637	rs11227395	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q13.1	NR	rs11227395-A	0.761003	2E-13		0.0181165	[0.013-0.023] unit decrease	NR [NR]	N
1087	chr11	65834339	65834340	rs10791845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.1		rs10791845-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1087	chr11	65846790	65846790	rs10692760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q13.1	PACS1	rs10692760-GTTT	0.713262	5E-10		0.016359096	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1087	chr11	65848737	65848738	rs475805	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q13.1	PACS1	rs475805-G	0.233	2E-9		0.9352	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1087	chr11	65854560	65854561	rs489337	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	11q13.1	NR	rs489337-A	0.234	2E-10		0.91649	[0.89-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
1087	chr11	65854560	65854561	rs489337	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	11q13.1	NR	rs489337-G	0.765	2E-8		1.1068313	[NR]	NR [9372253] (imputed)	N
1087	chr11	65859390	65859391	rs11605328	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q13.1	EIF1AD	rs11605328-A	0.73734375	2E-6	(EIF1AD, 13545_97_3)	0.13307266	[0.078-0.188] unit increase	Illumina [> 1000000] (imputed)	N
1087	chr11	65886661	65886662	rs524281	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	11q13.2	PACS1	rs524281-?	NR	4E-6	(Alpha peak frequency, occipital	0.073	[0.042-0.104] unit increase	Illumina [527829]	N
1087	chr11	65895165	65895166	rs564343	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	11q13.2	PACS1	rs564343-A	0.41	2E-9		1.22	[1.15-1.31]	Affymetrix [~ 2000000] (imputed)	N
1087	chr11	65914765	65914766	rs801742	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.2	PACS1	rs801742-A	0.0431	1E-13		0.3101	[0.23-0.39] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1087	chr11	65914765	65914766	rs801742	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q13.2	Intergenic	rs801742-A	0.3466	3E-8	(MTAG)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr11	65924216	65924217	rs801738	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q13.2		rs801738-C	0.64	6E-14				NR [NR] (imputed)	N
1087	chr11	65924216	65924217	rs801738	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11q13.2		rs801738-C	0.64	6E-13		0.014	mmol/L decrease	NR [NR] (imputed)	N
1087	chr11	65924216	65924217	rs801738	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q13.2		rs801738-C	0.64	7E-18		0.013	% increase	NR [NR] (imputed)	N
1087	chr11	65924216	65924217	rs801738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.2	Intergenic	rs801738-C	0.6511	2E-13	(MTAG)	0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr11	65927772	65927773	rs526200	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q13.2	SF3B2	rs526200-?	NR	1E-6	(serine)	0.17861132	[0.11-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1088	chr11	65930989	65930990	rs708472	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q13.2	NR	rs708472-A	0.487	3E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1088	chr11	65934548	65934549	rs801733	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	11q13.2	NR	rs801733-?		7E-14		0.0168585	[0.012-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1088	chr11	65935501	65935502	rs801732	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.2	NR	rs801732-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1088	chr11	65945185	65945186	rs10896090	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	11q13.2	PACS1	rs10896090-A	NR	2E-8		1.079	[1.051-1.108]	Illumina [3742365] (imputed)	N
1088	chr11	65945185	65945186	rs10896090	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q13.2	SART1, EIF1AD, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, PACS1, KLC2, RAB1B, CNIH2, YIF1A, TMEM151A, CD248, RIN1, BRMS1	rs10896090-A	0.809	2E-8		1.08372	[1.06-1.11]	NR [9372253] (imputed)	N
1088	chr11	65960291	65960291	rs34916336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	PACS1	rs34916336-CA	NR	2E-10		0.0290261	[0.02-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1088	chr11	65961497	65961498	rs56223081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	PACS1	rs56223081-T	NR	1E-12		0.0458254	[0.033-0.058] unit decrease	Affymetrix [321114] (imputed)	N
1088	chr11	65961497	65961498	rs56223081	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs56223081-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1088	chr11	65989040	65989041	rs187649293	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.2	NR	rs187649293-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1088	chr11	65989040	65989041	rs187649293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.2		rs187649293-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1088	chr11	66003851	66003852	rs71457704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	PACS1	rs71457704-A	NR	7E-13		0.0489531	[0.036-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1088	chr11	66003851	66003852	rs71457704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	PACS1	rs71457704-A	NR	4E-11		0.0496285	[0.035-0.064] unit decrease	Affymetrix [323123] (imputed)	N
1088	chr11	66035335	66035336	rs12363523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	RP11-867G23.2	rs12363523-A	NR	4E-9		0.027076	[0.018-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1088	chr11	66035335	66035336	rs12363523	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q13.2	NR	rs12363523-A	NR	3E-9		0.0231	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1088	chr11	66035978	66035979	rs3814739	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q13.2	KLC2	rs3814739-?	NR	5E-7	(serine)	0.18890886	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1088	chr11	66041078	66041079	rs524859	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.2	NR	rs524859-G	0.6399	1E-12		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	11q13.2	CNIH2	rs4073582-A	0.3618	6E-9				Illumina [5508534] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	CNIH2	rs4073582-A	0.3102	5E-28		0.0408	[0.034-0.048] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q13.2	CNIH2	rs4073582-A	0.3479	9E-6		0.017981	[0.01-0.026] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.2	NR	rs4073582-A	0.3133	1E-13	(women)	0.04	[0.029-0.051] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.2	NR	rs4073582-A	0.2982	2E-16	(men)	0.0506	[0.039-0.063] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q13.2	NR	rs4073582-A	0.3597	1E-10		0.01665528	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.2	NA	rs4073582-G	0.6509	4E-11	(Female)	1.0526316	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1088	chr11	66050711	66050712	rs4073582	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	11q13.2	CNIH-2	rs4073582-C	0.915	4E-8	(Japanese)	1.58	[1.34-1.86]	Illumina [570442]	N
1088	chr11	66050711	66050712	rs4073582	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	11q13.2	CNIH-2	rs4073582-G	0.91	6E-9		1.66	[1.40-1.96]	Illumina [570442]	N
1088	chr11	66054822	66054823	rs510398	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q13.2	YIF1A	rs510398-?		4E-6	(AIRg)	12.63	[6.83-18.43] unit increase	Illumina [693128]	N
1088	chr11	66058081	66058082	rs556595	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q13.2	NR	rs556595-G	0.49	3E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1089	chr11	66060545	66060546	rs479018	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.2		rs479018-A	0.3255	3E-13		0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1089	chr11	66066992	66066993	rs4930352	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.2	TMEM151A	rs4930352-G	0.505873	9E-17		0.0161324	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1089	chr11	66066992	66066993	rs4930352	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.2	TMEM151A	rs4930352-G	0.505885	6E-17		0.0167052	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1089	chr11	66069217	66069218	rs1783730	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.2	NR	rs1783730-G	0.5553	3E-7	(EA)	0.0339	[0.021-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1089	chr11	66070145	66070146	rs523583	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.2	NR	rs523583-C	0.469219	6E-10		0.012174	[0.0083-0.016] unit increase	Affymetrix [16668957] (imputed)	N
1089	chr11	66070574	66070575	rs509533	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11q13.2	NR	rs509533-G	0.471173	4E-13		0.05122011	[0.037-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1089	chr11	66070574	66070575	rs509533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs509533-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1089	chr11	66076359	66076360	rs12417758	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	11q13.2	NR	rs12417758-?	NR	6E-10				Affymetrix, Illumina [6210504] (imputed)	N
1089	chr11	66076359	66076360	rs12417758	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	11q13.2	NR	rs12417758-C	0.4539	6E-12		0.2093	[0.15-0.27] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
1089	chr11	66079785	66079786	rs490972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q13.2	CD248	rs490972-G	0.530826	1E-12		0.0142281	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1089	chr11	66079817	66079818	rs61891388	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.2		rs61891388-?	NR	6E-10		0.0126293	[0.0086-0.0166] unit increase	NR [6912294] (imputed)	N
1089	chr11	66079817	66079818	rs61891388	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.2		rs61891388-T	0.544079	2E-9		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
1089	chr11	66080022	66080023	rs10896109	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	11q13.2	NR	rs10896109-?	NR	5E-7				Illumina [7427422] (imputed)	N
1089	chr11	66082913	66082914	rs138390105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q13.2	NR	rs138390105-C	NR	4E-10		0.1865	[0.13-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr11	66092242	66092243	rs118151305	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	11q13.2	NR	rs118151305-A	0.12004999999999999	6E-9		0.0672	[0.045-0.09] unit decrease	Illumina [NR]	N
1089	chr11	66092566	66092567	rs76878669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.2	Intergenic	rs76878669-C	0.7546	5E-9	(MTAG)	0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1089	chr11	66092566	66092567	rs76878669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.2		rs76878669-C	0.7609	3E-17		0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1089	chr11	66092566	66092567	rs76878669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.2	Intergenic	rs76878669-C	0.7609	4E-16	(MTAG)	0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1089	chr11	66092566	66092567	rs76878669	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	11q13.2	NR	rs76878669-C	0.7591	4E-8		0.014284755	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1089	chr11	66099322	66099323	rs71457711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.2	NR	rs71457711-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1089	chr11	66119562	66119563	rs7395670	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q13.2	NR	rs7395670-C	0.593851	3E-9		0.0122007	[0.0082-0.0162] unit increase	Affymetrix [16583148] (imputed)	N
1089	chr11	66120564	66120565	rs4930176	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	TRNA Ser, SLC29A2	rs4930176-T	0.783872	6E-11	(eicosapentaenoate (EPA; 20:5n3))	0.188	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1089	chr11	66120564	66120565	rs4930176	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.2	TRNA Ser, SLC29A2	rs4930176-T	0.783872	6E-11	(eicosapentaenoate (EPA; 20:5n3))	0.188	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1089	chr11	66124765	66124766	rs141579297	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	11q13.2	RP11-867G23.8	rs141579297-G	0.803	7E-7		0.2587	[0.16-0.36] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1089	chr11	66125460	66125461	rs68162171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.2		rs68162171-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1089	chr11	66135897	66135898	rs2292123	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.2	SLC29A2	rs2292123-T	0.01576	1E-11		0.4294	[0.31-0.55] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1089	chr11	66151648	66151649	rs10750786	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.2	NR	rs10750786-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1089	chr11	66158465	66158466	rs34361331	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	RP11-867G23.9	rs34361331-A	NR	5E-14		0.0234508	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1089	chr11	66158465	66158466	rs34361331	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.2	RP11-867G23.9	rs34361331-A	NR	4E-9		0.0184225	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1089	chr11	66173399	66173400	rs11227478	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	11q13.2	NPAS4	rs11227478-A	0.2093	2E-9		0.9756568	[NR]	Illumina [12493444] (imputed)	N
1089	chr11	66182449	66182450	rs72940579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.2	RP11-867G23.10	rs72940579-T	NR	5E-8		0.0164617	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1089	chr11	66184516	66184517	rs76422502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q13.2		rs76422502-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1089	chr11	66186881	66186882	rs7947391	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q13.2		rs7947391-A	0.414	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1089	chr11	66186881	66186882	rs7947391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	NPAS4	rs7947391-A	NR	2E-11		0.0194938	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1089	chr11	66186881	66186882	rs7947391	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs7947391-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1089	chr11	66186881	66186882	rs7947391	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q13.2	NPAS4	rs7947391-A	0.411	4E-8		0.0066	[0.0042-0.009] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1089	chr11	66188303	66188304	rs117297304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.2		rs117297304-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1090	chr11	66191858	66191859	rs71457718	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs71457718-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1090	chr11	66224194	66224195	rs35313216	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		11q13.2	LOC100505524	rs35313216-G	0.928	2E-6		0.026	[0.016-0.036] dioptres increase	NR [5901671] (imputed)	N
1090	chr11	66227183	66227184	rs1791687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q13.2		rs1791687-C	NR	4E-15		0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1090	chr11	66228472	66228472	rs550317996	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q13.2	MRPL11	rs550317996-?	NR	2E-10		0.019	[0.014-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1090	chr11	66228826	66228826	rs369582375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	MRPL11	rs369582375-GT	NR	6E-9		0.0169998	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1090	chr11	66242106	66242107	rs61582507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.2		rs61582507-A	0.750796	2E-8		0.025736	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242106	66242107	rs61582507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	11q13.2		rs61582507-A	0.750796	4E-9		0.0270099	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242106	66242107	rs61582507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q13.2		rs61582507-A	0.750796	7E-9		0.0267871	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242209	66242210	rs59421767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	11q13.2		rs59421767-A	0.755398	6E-9		0.0278547	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242209	66242210	rs59421767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	11q13.2		rs59421767-A	0.755398	1E-8		0.0274324	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242209	66242210	rs59421767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q13.2		rs59421767-A	0.755398	2E-8		0.0269541	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1090	chr11	66242209	66242210	rs59421767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q13.2		rs59421767-T	NR	3E-8		0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1090	chr11	66251452	66251452	rs148812168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q13.2		rs148812168-CT	NR	4E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1090	chr11	66254084	66254085	rs11550299	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.2		rs11550299-G	0.759605	4E-9		0.02824	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1090	chr11	66288732	66288733	rs10896125	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q13.2	CTD-3074O7.11	rs10896125-G	0.761614	3E-12		0.0170133	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1090	chr11	66292363	66292365	rs35475784	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.2	CTD-3074O7.11, BBS1, ZDHHC24	rs35475784-T	0.0617	8E-6		0.0623	[0.035-0.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1090	chr11	66296568	66296569	rs74869459	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q13.2	CTD-3074O7.11	rs74869459-T	0.761445	3E-12		0.0170711	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1090	chr11	66299514	66299515	rs8432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.2		rs8432-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1091	chr11	66324421	66324422	rs679228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.2		rs679228-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1091	chr11	66324421	66324422	rs679228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs679228-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1091	chr11	66324582	66324583	rs678397	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q13.2	PC	rs678397-T	0.457	5E-9		1.05601	[1.04-1.07]	Affymetrix, Illumina [7549318] (imputed)	N
1091	chr11	66328094	66328095	rs1815739	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.2	CTSF	rs1815739-C	0.556	8E-12	(Growth/differentiation factor 11/8, GDF11.MSTN.2765.4.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
1091	chr11	66328876	66328877	rs607736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSF	5,364 Icelandic ancestry individuals	NA	11q13.2		rs607736-A	0.2978	1E-22		0.202496	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1091	chr11	66328876	66328877	rs607736	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q13.2	CTSF	rs607736-G	0.7009375	2E-11	(CTSF, 9212_22_3)	0.1803852	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1091	chr11	66329731	66329732	rs540874	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	11q13.2	NR	rs540874-A	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1091	chr11	66329731	66329732	rs540874	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q13.2	NR	rs540874-A	NR	2E-6				Affymetrix [~ 8270000] (imputed)	N
1091	chr11	66329731	66329732	rs540874	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.2	NR	rs540874-A	NR	5E-6				Affymetrix [~ 8270000] (imputed)	N
1091	chr11	66335307	66335308	rs2242663	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	11q13.2	NR	rs2242663-T	0.25	1E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [2366197] (imputed)	N
1091	chr11	66337388	66337389	rs11344495	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.2	NR	rs11344495-C	0.334	2E-6	(EA)	0.0327	[0.019-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1091	chr11	66337873	66337874	rs1791679	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.2	CTSF	rs1791679-A	0.289	3E-18	(Cathepsin F, CTSF.9212.22.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1091	chr11	66339638	66339639	rs113835537	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q13.2	CTSF	rs113835537-A	NR	9E-7	(Pi10, All)	0.012	[0.0075-0.0165] unit increase	Illumina [7600000] (imputed)	N
1091	chr11	66342690	66342691	rs662094	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q13.2	CTSF, CCDC87	rs662094-A	0.4944	5E-13		1.0286014		Affymetrix [11880941] (imputed)	N
1091	chr11	66369210	66369211	rs1791684	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q13.2	NR	rs1791684-G	0.5255	3E-7		0.0061	[0.0037-0.0085] unit increase	NR [7666894] (imputed)	N
1091	chr11	66401372	66401373	rs566673	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.2	NR	rs566673-G	0.4649	1E-10		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1091	chr11	66404335	66404336	rs76199858	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.2	RBM14-RBM4	rs76199858-T		1E-14		0.6642	[0.5-0.83] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1091	chr11	66409408	66409409	rs519380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q13.2	NR	rs519380-A	NR	2E-11		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr11	66409408	66409409	rs519380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q13.2	NR	rs519380-A	NR	5E-11		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr11	66441095	66441096	rs147899239	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.2	NA	rs147899239-A	0.8317	8E-10	(Female)	1.063	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1092	chr11	66456386	66456387	rs2276138	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q13.2	SPTBN2	rs2276138-T	0.4754	2E-8		0.023118887	[0.015-0.031] unit decrease	NR [NR]	N
1092	chr11	66464560	66464561	rs114901285	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11q13.2		rs114901285-A	0.94	1E-6		0.09	[0.053-0.127] unit decrease	Affymetrix [6030650] (imputed)	N
1092	chr11	66477864	66477865	rs55908905	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.2	NR	rs55908905-A	0.2681	8E-6	(EA)	0.032	[0.018-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1092	chr11	66483264	66483265	rs12805133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	SPTBN2	rs12805133-G	NR	1E-9		0.0186644	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1092	chr11	66483264	66483265	rs12805133	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	11q13.2	NR	rs12805133-A	0.5507	5E-9		0.06369018	[0.042-0.085] unit decrease	NR [NR]	N
1092	chr11	66483264	66483265	rs12805133	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	11q13.2	NR	rs12805133-?		3E-8				NR [520857]	N
1092	chr11	66486142	66486143	rs551708	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q13.2		rs551708-T	0.34	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
1092	chr11	66486142	66486143	rs551708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q13.2		rs551708-C	NR	4E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q13.2		rs34419890-C	NR	5E-8		0.024	[0.015-0.033] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	SPTBN2	rs34419890-C	NR	7E-27		0.0571018	[0.047-0.068] unit decrease	Affymetrix [321016] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11q13.2	NR	rs34419890-C	NR	4E-9		0.0285	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q13.2	NR	rs34419890-C	NR	1E-10		0.0297	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.2	NR	rs34419890-C	NR	3E-9		0.0286	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs34419890-?	NR	4E-49				Affymetrix [~ 8270000] (imputed)	N
1092	chr11	66501623	66501624	rs34419890	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	11q13.2	NR	rs34419890-T	0.93	2E-8		1.13	[1.09-1.18]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1092	chr11	66518888	66518889	rs149670286	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.2	C11orf80	rs149670286-T		1E-14		0.6642	[0.5-0.83] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1092	chr11	66518888	66518889	rs149670286	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	C11orf80	rs149670286-T	0.0384	2E-120	(East Asian)	0.4635	[0.42-0.5] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1092	chr11	66529962	66529963	rs147974484	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	11q13.2	C11orf80	rs147974484-?	NR	3E-9		0.08843	[0.059-0.118] unit decrease novel	Illumina [6108953] (imputed)	N
1092	chr11	66551001	66551002	rs10896135	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	11q13.2	C11orf80, SPTBN2	rs10896135-G	NR	1E-7		1.12427	[1.0763-1.17437]	Illumina [at least 6195093] (imputed)	N
1092	chr11	66551001	66551002	rs10896135	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	11q13.2	RCE1, RBM4B, RBM4, RBM14, RAB1B, PELI3, PC, NPAS4, MRPL11, LRFN4, KLC2, DPP3, CTSF, CNIH2, CD248, CCS, CCDC87, C11orf86, GAL3ST3, C11orf80, BRMS1, BBS1, B3GNT1, ACTN3, PACS1, SF3B2, ZDHHC24, YIF1A, TMEM151A, SYT12, SPTBN2, SLC29A2, RIN1	rs10896135-G	NR	2E-7		1.12	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1092	chr11	66560981	66560982	rs4576826	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	11q13.2	C11orf80	rs4576826-T	0.74	6E-10	(model 3)	0.015	unit increase	Affymetrix [11800000] (imputed)	N
1093	chr11	66596884	66596885	rs61890450	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.2	NR	rs61890450-G	0.046016999999999975	9E-10		0.012431	[0.0084-0.0164] unit increase	Affymetrix [16582909] (imputed)	N
1093	chr11	66608520	66608521	rs1201342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	C11orf80	rs1201342-G	NR	4E-9		0.0203891	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1093	chr11	66608520	66608521	rs1201342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	C11orf80	rs1201342-G	NR	4E-13		0.0274095	[0.02-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1093	chr11	66610644	66610645	rs7570	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.2	NR	rs7570-C	0.2653	8E-6	(EA)	0.0319	[0.018-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1093	chr11	66610823	66610823	rs200116865	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11q13.2	NR	rs200116865-?	NR	7E-6		0.227809	[0.13-0.33] unit decrease	NR [13958389] (imputed)	N
1093	chr11	66640173	66640174	rs191456353	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	11q13.2	PC	rs191456353-G	0.004	1E-6		11.97	[4.35-32.95]	Illumina [7959153] (imputed)	N
1093	chr11	66642402	66642403	rs79214621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q13.2		rs79214621-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1093	chr11	66649526	66649527	rs35099456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.2		rs35099456-C	0.05	8E-18		8.6	z score increase	Affymetrix [9061022] (imputed)	N
1093	chr11	66649526	66649527	rs35099456	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q13.2		rs35099456-C	0.05	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
1093	chr11	66649526	66649527	rs35099456	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q13.2	NR	rs35099456-C	0.0621	3E-10				NR [9056863] (imputed)	N
1093	chr11	66649526	66649527	rs35099456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	PC	rs35099456-C	NR	1E-25		0.0667964	[0.054-0.079] unit decrease	Affymetrix [323123] (imputed)	N
1093	chr11	66650059	66650060	rs10896139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.2		rs10896139-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1093	chr11	66650059	66650060	rs10896139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q13.2		rs10896139-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1093	chr11	66660948	66660949	rs4008953	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11q13.2		rs4008953-A	0.7123	3E-11		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1093	chr11	66662730	66662731	rs7122539	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	11q13.2	NR	rs7122539-G	0.653	5E-9		1.0738	[1.05-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
1093	chr11	66662730	66662731	rs7122539	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q13.2	SPTBN2, C11orf80, RCE1, PC, LRFN4	rs7122539-G	0.652	4E-8		1.066735		NR [9372253] (imputed)	N
1093	chr11	66662730	66662731	rs7122539	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	11q13.2	PC	rs7122539-?	NR	8E-6				Illumina [990115]	N
1093	chr11	66666995	66666996	rs9971487	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q13.2	NR	rs9971487-?	NR	2E-6		0.0083168	[0.0049-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1093	chr11	66667712	66667713	rs56803995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs56803995-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1093	chr11	66673078	66673079	rs10160758	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11q13.2	LRFN4	rs10160758-T	0.7309	8E-10		0.013438212	[0.0091-0.0177] unit increase	Illumina [9339358] (imputed)	N
1093	chr11	66690453	66690454	rs7110302	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	PC	rs7110302-T	0.3769	5E-8		0.0179	[0.011-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1093	chr11	66703816	66703817	rs34469991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.2	PC	rs34469991-G	NR	5E-8		0.0294625	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1093	chr11	66703816	66703817	rs34469991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	PC	rs34469991-G	NR	1E-30		0.0626838	[0.052-0.073] unit decrease	Affymetrix [321114] (imputed)	N
1093	chr11	66703816	66703817	rs34469991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	PC	rs34469991-G	NR	5E-16		0.0483709	[0.037-0.06] unit decrease	Affymetrix [321114] (imputed)	N
1093	chr11	66703816	66703817	rs34469991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.2	PC	rs34469991-G	NR	8E-13		0.0390719	[0.028-0.05] unit decrease	Affymetrix [321169] (imputed)	N
1093	chr11	66705241	66705242	rs56295710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	PC	rs56295710-T	NR	3E-9		0.0213016	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1093	chr11	66705241	66705242	rs56295710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	PC	rs56295710-T	NR	2E-8		0.0221968	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1093	chr11	66705241	66705242	rs56295710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	PC	rs56295710-T	NR	4E-13		0.0258727	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1093	chr11	66705241	66705242	rs56295710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	PC	rs56295710-T	NR	2E-10		0.0247786	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1093	chr11	66711194	66711195	rs117905790	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11q13.2		rs117905790-C	0.885	1E-5		0.071	[0.04-0.102] unit decrease	Affymetrix [6030650] (imputed)	N
1094	chr11	66718430	66718431	rs1530891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	PC	rs1530891-T	NR	7E-9		0.0164266	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1094	chr11	66748203	66748204	rs115850253	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	11q13.2	NR	rs115850253-A	0.014	3E-6		3.67	[2.13-6.32]	Illumina [9327222] (imputed)	N
1094	chr11	66798687	66798688	rs138018316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11q13.2		rs138018316-T	0.020184	4E-11		0.0866629	[0.061-0.112] unit decrease	Illumina [13476266] (imputed)	N
1094	chr11	66799194	66799195	rs60421434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs60421434-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1094	chr11	66804244	66804244	rs11440105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	SYT12	rs11440105-T	NR	4E-9		0.0213121	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1094	chr11	66805339	66805340	rs7950567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q13.2		rs7950567-A	NR	2E-8		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1094	chr11	66826159	66826160	rs7112925	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	11q13.2	RHOD	rs7112925-T	0.356	6E-15		0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1094	chr11	66826159	66826160	rs7112925	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.2	RHOD	rs7112925-T	0.35	9E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1094	chr11	66827318	66827319	rs11602157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	RHOD	rs11602157-A	NR	1E-14		0.0226633	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1094	chr11	66835193	66835194	rs3923203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	RHOD	rs3923203-C	NR	4E-10		0.0185942	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1094	chr11	66835193	66835194	rs3923203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs3923203-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1095	chr11	66855592	66855593	rs148627238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA			rs148627238-A	NR	3E-8		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1095	chr11	66855592	66855593	rs148627238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA			rs148627238-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1095	chr11	66865142	66865143	rs72926970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA			rs72926970-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1095	chr11	66872319	66872320	rs34560402	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA			rs34560402-T	0.0647	3E-10		0.8626036	[0.823935394-0.903086587]	Affymetrix, Illumina [NR] (imputed)	N
1095	chr11	66891727	66891728	rs540241028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs540241028-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1095	chr11	66897377	66897379	rs531184891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.2	KDM2A	rs531184891-CAA	0.9213	1E-14		0.0984	[0.073-0.123] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1095	chr11	66897377	66897379	rs531184891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11q13.2	KDM2A	rs531184891-C	0.0835	3E-10		0.04064012	[0.028-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1095	chr11	66897377	66897379	rs531184891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q13.2	KDM2A	rs531184891-C	0.0836	1E-14		0.0492015	[0.037-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1095	chr11	66899618	66899619	rs56088284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q13.2	KDM2A	rs56088284-G	0.0831960000000001	2E-23		0.039830707	[0.032-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr11	66899618	66899619	rs56088284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.2	NR	rs56088284-G	0.0779348	1E-27				Affymetrix, Illumina [24332387] (imputed)	N
1095	chr11	66899618	66899619	rs56088284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q13.2	NR	rs56088284-G	0.081236	1E-30		0.039098	[0.032-0.046] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1095	chr11	66899618	66899619	rs56088284	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	11q13.2	NR	rs56088284-G	0.0927763	4E-9		0.007186769	[0.0048-0.0096] m decrease	Illumina [24111857] (imputed)	N
1095	chr11	66913469	66913469	rs552846225	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	ADRBK1, ANKRD13D, CLCF1, FBXL11, KIAA1394, POLD4, PPP1CA, RAD9A, SSH3, TBC1D10C	rs552846225-GT	0.101383	8E-28		0.03882	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1095	chr11	66913469	66913469	rs552846225	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	ADRBK1, ANKRD13D, CLCF1, FBXL11, KIAA1394, POLD4, PPP1CA, RAD9A, SSH3, TBC1D10C	rs552846225-GT	0.101383	1E-35	(females)	0.06424	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1095	chr11	66913469	66913469	rs552846225	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	ADRBK1, ANKRD13D, CLCF1, FBXL11, KIAA1394, POLD4, PPP1CA, RAD9A, SSH3, TBC1D10C	rs552846225-GT	0.101383	1E-25	(females)	0.05534	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1095	chr11	66913469	66913469	rs552846225	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	ADRBK1, ANKRD13D, CLCF1, FBXL11, KIAA1394, POLD4, PPP1CA, RAD9A, SSH3, TBC1D10C	rs552846225-GT	0.101383	1E-21		0.03447	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1095	chr11	66913469	66913469	rs552846225	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	ADRBK1, ANKRD13D, CLCF1, FBXL11, KIAA1394, POLD4, PPP1CA, RAD9A, SSH3, TBC1D10C	rs552846225-GT	0.101383	9E-8	(females)	0.02347	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1095	chr11	66951964	66951965	rs12785905	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.2	NR	rs12785905-C	NR	2E-10		1.123	[1.08-1.16]	Affymetrix, Illumina [29235255] (imputed)	N
1095	chr11	66951964	66951965	rs12785905	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q13.2	KDM2A	rs12785905-C	0.05	8E-9		1.12	[1.08-1.17]	Illumina [20370935] (imputed)	N
1096	chr11	66979502	66979503	rs181415750	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	11q13.2	NR	rs181415750-G	0.013	1E-6		3.788	[2.203-6.512]	Illumina [7585599] (imputed)	N
1096	chr11	66988047	66988048	rs12790261	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.2	KDM2A	rs12790261-A	0.0827	6E-40		0.0455	[0.039-0.052] unit decrease	Affymetrix [18391927] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q13.2		rs7952436-T	NR	4E-26		0.0395	[0.032-0.047] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q13.2		rs7952436-T	NR	5E-153		0.0787	[0.073-0.085] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	KDM2A	rs7952436-T	NR	2E-48		0.0750369	[0.065-0.085] unit decrease	Affymetrix [321114] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	KDM2A	rs7952436-T	NR	5E-29		0.0625069	[0.052-0.073] unit decrease	Affymetrix [321114] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	KDM2A	rs7952436-T	NR	5E-40		0.0673794	[0.057-0.077] unit decrease	Affymetrix [321016] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.2	KDM2A	rs7952436-T	NR	3E-19		0.0462052	[0.036-0.056] unit decrease	Affymetrix [321169] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.2	NR	rs7952436-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs7952436-?	NR	1E-81				Affymetrix [~ 8270000] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.2		rs7952436-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs7952436-?	NR	4E-262				NR [~ 8900000] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q13.2	NR	rs7952436-?	NR	7E-23		0.39525	[0.32-0.47] unit decrease	Affymetrix [7794483] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q13.2	NR	rs7952436-?	NR	5E-14	(male)	0.48078	[0.36-0.61] unit decrease	Affymetrix [7794483] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q13.2	NR	rs7952436-?	NR	5E-11	(female)	0.28663	[0.2-0.37] unit decrease	Affymetrix [7794483] (imputed)	N
1096	chr11	67024533	67024534	rs7952436	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	11q13.2	KDM2A	rs7952436-T	0.0896	2E-12		0.008747779	[0.0063-0.0112] m decrease	Illumina [24111857] (imputed)	N
1096	chr11	67041966	67041985	rs569598265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q13.2	ADRBK1	rs569598265-C	0.8004	2E-14		0.03502666	[0.026-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1096	chr11	67076063	67076064	rs34695471	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.2	SSH3	rs34695471-G	0.934125	4E-11		0.0258355	[0.018-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1096	chr11	67093359	67093360	rs10791902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	SSH3	rs10791902-T	NR	1E-8		0.0165697	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1096	chr11	67093359	67093360	rs10791902	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q13.2	SSH3	rs10791902-C	0.58767	4E-8		0.00791481	[0.0051-0.0107] unit decrease	Affymetrix [12370749]	N
1096	chr11	67097777	67097778	rs76335321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q13.2		rs76335321-C	0.082561	4E-14		0.03068315	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr11	67097777	67097778	rs76335321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.2		rs76335321-C	0.082567	7E-48		0.059976004	[0.052-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1096	chr11	67097777	67097778	rs76335321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.2	NR	rs76335321-T	0.923463	1E-18				Affymetrix, Illumina [22063850] (imputed)	N
1096	chr11	67097777	67097778	rs76335321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.2		rs76335321-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1097	chr11	67128732	67128733	rs186183604	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	11q13.2	CLCF1	rs186183604-A	0.04	3E-11	(other polyunsaturated fatty acids than 18:2)	0.24	[0.16-0.32] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1097	chr11	67133247	67133248	rs77876222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q13.2	NR	rs77876222-C	0.980352	3E-10		0.044726	[0.031-0.059] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1097	chr11	67160960	67160961	rs2066496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs2066496-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1097	chr11	67164132	67164133	rs872109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q13.2		rs872109-T	NR	6E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q13.2		rs61734601-A	NR	8E-9		0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q13.2	NR	rs61734601-A	NR	4E-12		0.0304	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q13.2	CARNS1	rs61734601-A	0.083099	7E-43		0.057028495	[0.049-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.2	CARNS1	rs61734601-A	0.083062	1E-38		0.0548712	[0.048-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.2	CARNS1	rs61734601-A	0.083076	4E-28		0.04488837	[0.037-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.2	PPP1CA, CARNS1	rs61734601-A	0.0767	2E-10		0.0877	[0.061-0.115] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1097	chr11	67184724	67184725	rs61734601	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	11q13.2	NR	rs61734601-A	0.0931281	2E-10		0.007811173	[0.0054-0.0102] m decrease	Illumina [24111857] (imputed)	N
1097	chr11	67192554	67192555	rs1626067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q13.2		rs1626067-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1097	chr11	67194592	67194593	rs11227793	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q13.2		rs11227793-C	0.561	3E-39		0.15	[0.12-0.17] % increase	Affymetrix [NR] (imputed)	N
1097	chr11	67194719	67194720	rs182384458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	RPS6KB2	rs182384458-A	NR	5E-12		0.0615316	[0.044-0.079] unit decrease	Affymetrix [321114] (imputed)	N
1097	chr11	67194719	67194720	rs182384458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	RPS6KB2	rs182384458-A	NR	3E-8		0.0490841	[0.032-0.066] unit decrease	Affymetrix [321016] (imputed)	N
1097	chr11	67196543	67196544	rs917570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.2	RPS6KB2	rs917570-G	0.425311	5E-38		0.029545918	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67197756	67197757	rs12573992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q13.2		rs12573992-G	NR	1E-45		0.0288	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1097	chr11	67197756	67197757	rs12573992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q13.2		rs12573992-G	NR	6E-45		0.0286	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1097	chr11	67197756	67197757	rs12573992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.2		rs12573992-?	NR	3E-59				NR [~ 8900000] (imputed)	N
1097	chr11	67200811	67200812	rs55987642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.2	RPS6KB2	rs55987642-T	0.051338	5E-10		0.032332953	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67202825	67202826	rs10274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.2	RPS6KB2	rs10274-A	0.436009	7E-29		0.0339848	[0.03-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67202825	67202826	rs10274	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.2	NR	rs10274-A	0.406285	5E-84				Affymetrix, Illumina [24246363] (imputed)	N
1097	chr11	67202825	67202826	rs10274	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.2	NR	rs10274-A	0.408035	2E-71				Affymetrix, Illumina [20825802] (imputed)	N
1097	chr11	67204341	67204342	rs12787021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q13.2		rs12787021-G	NR	8E-10		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1097	chr11	67204341	67204342	rs12787021	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Ventral diencephalon volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q13.2	PTPRCAP	rs12787021-?		6E-6				Illumina [4322238] (imputed)	N
1097	chr11	67207425	67207426	rs2302264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11q13.2	NR	rs2302264-G	0.680261	3E-11		0.029186	[0.021-0.038] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1097	chr11	67210879	67210880	rs550916783	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.2	CORO1B	rs550916783-G	0.988705	5E-8		0.0528525	[0.034-0.072] unit increase	Affymetrix [NR] (imputed)	N
1097	chr11	67213517	67213518	rs1638556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q13.2	NR	rs1638556-C	0.436074	3E-63		0.032663	[0.029-0.036] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1097	chr11	67216848	67216849	rs182377406	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to citalopram or escitalopram and depression	2,005 European ancestry non-responder cases, 192,083 European ancestry healthy controls	NA	11q13.2	CORO1B, GPR152	rs182377406-?		1E-6		5.773	[3.250-10.254]	Illumina [~ 12000000] (imputed)	N
1097	chr11	67218011	67218012	rs79731748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	11q13.2	NR	rs79731748-C	0.823074	8E-11		0.035317	[0.025-0.046] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1097	chr11	67221853	67221854	rs1790761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q13.2	CABP4	rs1790761-C	0.4359	6E-22		0.03423529	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1097	chr11	67224390	67224391	rs12803635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q13.2	CABP4	rs12803635-A	0.050352	2E-16		0.044181593	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67224390	67224391	rs12803635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.2	CABP4	rs12803635-A	0.050407	2E-11		0.0418933	[0.033-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1097	chr11	67224390	67224391	rs12803635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q13.2	CABP4	rs12803635-A	0.0501	1E-13		0.05981608	[0.044-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1097	chr11	67231028	67231029	rs11285778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q13.2	CTC-1337H24.2	rs11285778-C	0.4371	2E-21		0.03386472	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1098	chr11	67242215	67242216	rs12795957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q13.2	NR	rs12795957-A	NR	2E-10		0.0333	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1098	chr11	67242215	67242216	rs12795957	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11q13.2	intergenic	rs12795957-A	0.0546151811690029	2E-76		0.031916425	unit decrease	NR [9276018] (imputed)	N
1098	chr11	67244643	67244644	rs36089024	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.2	AIP	rs36089024-C	0.57593	7E-10		0.012235	[0.0083-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
1098	chr11	67245759	67245760	rs144740330	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	AIP	rs144740330-A	0.0845	3E-23	(East Asian)	0.1162	[0.093-0.139] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1098	chr11	67246629	67246630	rs12799746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q13.2	AIP	rs12799746-T	0.399791	2E-31		0.028472636	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr11	67246756	67246757	rs11227805	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	AIP	rs11227805-T	0.1804	9E-9		0.0266	[0.018-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1098	chr11	67246756	67246757	rs11227805	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q13.2	NR	rs11227805-T	0.1672	3E-7	(men)	0.0389	[0.024-0.054] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1098	chr11	67253563	67253564	rs7110021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.2	AIP	rs7110021-C	0.436302	3E-26		0.024801066	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr11	67253563	67253564	rs7110021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q13.2	NR	rs7110021-C	0.429784	3E-76		0.034333	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1098	chr11	67288593	67288594	rs2276118	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q13.2	RPS6KB2, PTPRCAP, CORO1B, CABP4, GPR152, TMEM134, AIP, PITPNM1, CABP2, GSTP1	rs2276118-?		3E-13				Affymetrix, Illumina [NR] (imputed)	N
1098	chr11	67301086	67301087	rs145044531	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs145044531-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1098	chr11	67334382	67334383	rs36051467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	GSTP1	rs36051467-T	NR	7E-17		0.0589759	[0.045-0.073] unit decrease	Affymetrix [323123] (imputed)	N
1098	chr11	67334382	67334383	rs36051467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.2	GSTP1	rs36051467-T	NR	9E-11		0.0419666	[0.029-0.055] unit decrease	Affymetrix [321169] (imputed)	N
1098	chr11	67352688	67352689	rs1695	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.2	GSTP1	rs1695-G	0.345	2E-12	(Glutathione S-transferase P, GSTP1.4911.49.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1099	chr11	67372945	67372946	rs12794995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs12794995-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1099	chr11	67372945	67372946	rs12794995	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	intergenic	rs12794995-A	0.260863	9E-8		0.01097	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1099	chr11	67372945	67372946	rs12794995	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	intergenic	rs12794995-A	0.260863	8E-8	(females)	0.0117	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1099	chr11	67372945	67372946	rs12794995	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	intergenic	rs12794995-A	0.260863	4E-7		0.01094	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1099	chr11	67372945	67372946	rs12794995	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.2	intergenic	rs12794995-A	0.260863	1E-7	(females)	0.01245	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1099	chr11	67379015	67379016	rs11227859	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	11q13.2	NR	rs11227859-?		3E-6				Illumina [892589]	N
1099	chr11	67382428	67382429	rs35156880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.2	DOC2GP	rs35156880-T	NR	3E-8		0.0363123	[0.024-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1099	chr11	67382428	67382429	rs35156880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	DOC2GP	rs35156880-T	NR	4E-26		0.0695228	[0.057-0.082] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67382428	67382429	rs35156880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	DOC2GP	rs35156880-T	NR	2E-16		0.0594103	[0.045-0.074] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67382428	67382429	rs35156880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	DOC2GP	rs35156880-T	NR	1E-17		0.0556795	[0.043-0.068] unit decrease	Affymetrix [321016] (imputed)	N
1099	chr11	67382428	67382429	rs35156880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.2		rs35156880-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1099	chr11	67400565	67400566	rs11227870	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	11q13.2	NR	rs11227870-?		3E-6				Illumina [892589]	N
1099	chr11	67401634	67401635	rs12787511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	TBX10	rs12787511-C	NR	9E-10		0.02045	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67401634	67401635	rs12787511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.2	NR	rs12787511-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1099	chr11	67402112	67402113	rs2514022	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q13.2	TBX10	rs2514022-C	0.4	2E-13	(dimethylmalonic acid)	0.141	[0.1-0.18] unit increase	Illumina [7750367] (imputed)	N
1099	chr11	67402361	67402362	rs3758938	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q13.2	NR	rs3758938-T	0.68	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [2446094] (imputed)	N
1099	chr11	67402361	67402362	rs3758938	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q13.2	NR	rs3758938-T	0.68	5E-8				Affymetrix [2446094] (imputed)	N
1099	chr11	67408884	67408885	rs11607368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	ACY3	rs11607368-T	NR	2E-12		0.0251634	[0.018-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67411419	67411420	rs2514032	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	11q13.2	ACY3	rs2514032-T	0.17	9E-12	(N-acetylkynurenine, N-acetylphenylalanine, N-acetyltryptophan, N-acetyltyrosine)	0.007	[0.005-0.009] unit decrease	Illumina [7750367] (imputed)	N
1099	chr11	67411419	67411420	rs2514032	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q13.2	ACY3	rs2514032-T	0.17	8E-13	(N-acetyltyrosine)	0.311	[0.23-0.4] unit decrease	Illumina [7750367] (imputed)	N
1099	chr11	67411419	67411420	rs2514032	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q13.2	ACY3	rs2514032-T	0.17	1E-11	(N-acetylphenylalanine)	0.266	[0.19-0.34] unit decrease	Illumina [7750367] (imputed)	N
1099	chr11	67412455	67412456	rs115780269	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q13.2	ACY3, AP003385.2	rs115780269-?	NR	8E-16	(N-acetylphenylalanine)	1.39	[NR] unit increase	Illumina [14760605] (imputed)	N
1099	chr11	67412455	67412456	rs115780269	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q13.2	ACY3, AP003385.2	rs115780269-?	NR	4E-17	(N-acetyltyrosine)	1.42	[NR] unit increase	Illumina [14760605] (imputed)	N
1099	chr11	67412455	67412456	rs115780269	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q13.2	ACY3, AP003385.2	rs115780269-?	NR	2E-12	(N-acetylkynurenine)	1.07	[NR] unit increase	Illumina [14760605] (imputed)	N
1099	chr11	67412455	67412456	rs115780269	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	11q13.2	ACY3, AP003385.2	rs115780269-?	NR	1E-22	(N-acetyltryptophan)	1.64	[NR] unit increase	Illumina [14760605] (imputed)	N
1099	chr11	67413005	67413006	rs2290958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	ACY3	rs2290958-T	0.209865	3E-45	(N-acetyltryptophan)	0.404	[0.35-0.46] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67413005	67413006	rs2290958	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.2	ACY3	rs2290958-T	0.209865	3E-45	(N-acetyltryptophan)	0.404	[0.35-0.46] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67414491	67414492	rs948445	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	ACY3	rs948445-C	0.209105	5E-13	(N-acetylkynurenine (2))	0.209	[0.15-0.27] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67414491	67414492	rs948445	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	ACY3	rs948445-C	0.209105	3E-24	(N-acetyltyrosine)	0.295	[0.24-0.35] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67414491	67414492	rs948445	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	ACY3	rs948445-C	0.209105	2E-24	(N-acetylphenylalanine)	0.295	[0.24-0.35] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67414491	67414492	rs948445	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.2	ACY3	rs948445-C	0.209105	5E-13	(N-acetylkynurenine (2))	0.209	[0.15-0.27] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67414491	67414492	rs948445	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q13.2	ACY3	rs948445-C	0.209105	3E-24	(N-acetyltyrosine)	0.295	[0.24-0.35] unit decrease	Illumina [13039987] (imputed)	N
1099	chr11	67421340	67421341	rs12288023	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	11q13.2	ACY3	rs12288023-C	0.09	9E-16	(N-acetylphenylalanine)	0.27	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1099	chr11	67441142	67441143	rs35632190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.2	ALDH3B2	rs35632190-T	NR	1E-11		0.0450762	[0.032-0.058] unit decrease	Affymetrix [323123] (imputed)	N
1099	chr11	67470923	67470924	rs67883055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	UNC93B5	rs67883055-A	NR	4E-13		0.0456874	[0.033-0.058] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67470923	67470924	rs67883055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	UNC93B5	rs67883055-A	NR	2E-12		0.0486276	[0.035-0.062] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr11	67470923	67470924	rs67883055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	UNC93B5	rs67883055-A	NR	4E-13		0.045355	[0.033-0.058] unit decrease	Affymetrix [321016] (imputed)	N
1099	chr11	67471718	67471719	rs117037288	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	11q13.2		rs117037288-T	NR	3E-7		5.0864697	NR	Affymetrix [7846216] (imputed)	N
1100	chr11	67589342	67589343	rs190536880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.2		rs190536880-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1100	chr11	67601125	67601126	rs71459609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs71459609-?	NR	8E-17				Affymetrix [~ 8270000] (imputed)	N
1100	chr11	67632226	67632227	rs35310616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.2	RP11-119D9.1	rs35310616-A	NR	1E-8		0.0379155	[0.025-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1100	chr11	67632226	67632227	rs35310616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	RP11-119D9.1	rs35310616-A	NR	8E-11		0.0429229	[0.03-0.056] unit decrease	Affymetrix [321016] (imputed)	N
1101	chr11	67633969	67633970	rs112453940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.2	RP11-119D9.1	rs112453940-G	NR	8E-9		0.0312344	[0.021-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1101	chr11	67656560	67656561	rs11228057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs11228057-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1101	chr11	67658721	67658722	rs190553906	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	11q13.2	NR	rs190553906-G		9E-6		0.9941	[0.56-1.43] SD units decrease	NR [10700000] (imputed)	N
1101	chr11	67715027	67715028	rs308309	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	11q13.2	intergenic	rs308309-C		5E-6		4.39	[NR] ms increase	Illumina [> 930000]	N
1101	chr11	67716569	67716570	rs1636218	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	11q13.2	FAM86C2P, UNC93B1	rs1636218-A	0.7697	1E-5		0.1379	[0.077-0.199] unit increase	NR [NR] (imputed)	N
1101	chr11	67716569	67716570	rs1636218	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	11q13.2	FAM86C2P, UNC93B1	rs1636218-A	0.7674	3E-6		0.1498	[0.087-0.213] unit increase	NR [NR] (imputed)	N
1101	chr11	67755614	67755615	rs1636211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.2	UNC93B1	rs1636211-A	NR	2E-9		0.0434185	[0.029-0.058] unit decrease	Affymetrix [321114] (imputed)	N
1102	chr11	67795612	67795613	rs3751081	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	11q13.2	ALDH3B1	rs3751081-A	0.0272	2E-8		0.2907	[0.19-0.39] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q13.2		rs36027301-T	NR	3E-11		0.0352	[0.025-0.046] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q13.2	NR	rs36027301-T	NR	2E-9		0.0325	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q13.2	NR	rs36027301-T	NR	1E-12		0.0382	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q13.2	TCIRG1	rs36027301-T	0.058053	3E-10		0.030207358	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	TCIRG1	rs36027301-C	0.94048	2E-12		0.0280331	[0.02-0.036] unit decrease	NR [13737936] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs36027301-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1102	chr11	67809267	67809268	rs36027301	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs36027301-?	NR	2E-12		0.0327651	[0.024-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
1102	chr11	67814942	67814943	rs140191063	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	TCIRG1	rs140191063-G	0.998	7E-11		0.129958	[0.091-0.169] unit decrease	NR [13737936] (imputed)	N
1102	chr11	67849582	67849583	rs61887548	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		11q13.2	CHKA	rs61887548-T	NR	6E-11		0.027448	[0.014-0.04] nmol/l increase	NR [19000000] (imputed)	N
1102	chr11	67874071	67874072	rs75592015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q13.2		rs75592015-C	NR	2E-8		0.0278	[0.018-0.037] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1103	chr11	67900910	67900911	rs191051273	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.2	CTD-2655K5.1	rs191051273-A	0.0038	9E-7		0.3113	[0.19-0.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1103	chr11	67931760	67931761	rs4930561	34716350	Lin WY	2021-10-29	Nat Commun	Genome-wide association study identifies susceptibility loci for acute myeloid leukemia.	Acute myeloid leukemia (all cytogenetic sub-types)	3,041 European ancestry cases, 6,760 European ancestry controls	977 European ancestry cases, 3,728 European ancestry controls	11q13.2		rs4930561-A	NR	2E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [6661818] (imputed)	N
1103	chr11	67931760	67931761	rs4930561	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors	207 European ancestry female cases, 2,774 European ancestry female controls	NA	11q13.2	SUV420H1	rs4930561-A	0.49	3E-7		1.59	[1.30-1.92]	Affymetrix, Illumina [16958466] (imputed)	N
1103	chr11	67931760	67931761	rs4930561	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q13.2	SUV420H1	rs4930561-G	0.511382618397086	9E-10	(IGP41)	0.185	[0.13-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
1103	chr11	67931760	67931761	rs4930561	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q13.2	SUV420H1	rs4930561-G	0.510670339237057	1E-8	(IGP1)	0.1714	[0.11-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
1103	chr11	67951781	67951782	rs555636223	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs555636223-?	NR	5E-44		0.253063	[0.22-0.29] unit increase	Affymetrix [20259828] (imputed)	N
1103	chr11	67975909	67975910	rs75390942	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	SUV420H1	rs75390942-A	0.768107	3E-12	(1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)*)	0.219	[0.16-0.28] unit increase	Illumina [13039987] (imputed)	N
1103	chr11	67978743	67978744	rs61890515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs61890515-?	NR	5E-30				NR [~ 8900000] (imputed)	N
1103	chr11	67991991	67991992	rs117247077	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.2	KMT5B	rs117247077-A	0.0461	5E-29	(East Asian)	0.1847	[0.15-0.22] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1103	chr11	68023031	68023032	rs11228182	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.2	intergenic	rs11228182-A	0.2958	2E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix [18391927] (imputed)	N
1103	chr11	68023741	68023742	rs67976715	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q13.2	C11orf24	rs67976715-C	0.231	2E-11		0.1971	[0.14-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1104	chr11	68029073	68029074	rs61887762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.2		rs61887762-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1104	chr11	68035539	68035540	rs11600312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.2	NR	rs11600312-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1104	chr11	68045494	68045495	rs413474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs413474-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1104	chr11	68095711	68095711	rs746258907	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q13.2	NR	rs746258907-AG	0.47249	8E-10		0.0155878	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
1104	chr11	68097048	68097049	rs312023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q13.2	NR	rs312023-G	0.472423	3E-24		0.0279464	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
1104	chr11	68099621	68099622	rs61887821	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	LRP5	rs61887821-G	0.994426	2E-73		0.222758	[0.2-0.25] unit increase	NR [13737936] (imputed)	N
1104	chr11	68099621	68099622	rs61887821	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs61887821-?	NR	5E-62		0.221288	[0.19-0.25] unit increase	Affymetrix [20259828] (imputed)	N
1104	chr11	68099621	68099622	rs61887821	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs61887821-G	0.994065	2E-20		0.199722	[0.16-0.24] unit increase	NR [17166351] (imputed)	N
1104	chr11	68099621	68099622	rs61887821	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs61887821-G	0.994019	3E-16	(women)	0.248372	[0.19-0.31] unit increase	NR [17166351] (imputed)	N
1104	chr11	68106112	68106113	rs35157500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.2	NR	rs35157500-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1104	chr11	68106112	68106113	rs35157500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs35157500-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1104	chr11	68106841	68106842	rs4988308	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.2	NR	rs4988308-G	0.5569390000000001	1E-9		0.00485036	[0.0032-0.0065] unit increase	Affymetrix [16582909] (imputed)	N
1104	chr11	68106841	68106842	rs4988308	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q13.2	NR	rs4988308-G	0.556619	5E-8		0.00566459	[0.0034-0.008] unit increase	Affymetrix [16582621] (imputed)	N
1104	chr11	68106841	68106842	rs4988308	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q13.2	NR	rs4988308-G	0.556619	1E-6		0.00543557	[0.003-0.0079] unit increase	Affymetrix [16582614] (imputed)	N
1104	chr11	68127312	68127313	rs167549	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs167549-?	NR	9E-19		0.0372095	[0.029-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
1104	chr11	68143718	68143719	rs11228219	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs11228219-?	NR	8E-34		0.0301339	[0.025-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1104	chr11	68143718	68143719	rs11228219	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs11228219-C	0.806313	6E-10	(women)	0.0337338	[0.022-0.045] unit increase	NR [17166351] (imputed)	N
1104	chr11	68143718	68143719	rs11228219	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs11228219-C	0.805803	5E-17		0.0346613	[0.026-0.043] unit increase	NR [17166351] (imputed)	N
1104	chr11	68143718	68143719	rs11228219	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs11228219-C	0.80522	1E-7	(men)	0.0342371	[0.022-0.047] unit increase	NR [17166351] (imputed)	N
1104	chr11	68149980	68149981	rs671191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.2		rs671191-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1104	chr11	68157341	68157342	rs141889567	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	LRP5	rs141889567-T	0.999408	4E-11		0.226132	[0.16-0.29] unit increase	NR [13737936] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.2	LRP5	rs4988321-A	NR	2E-10		0.0424016	[0.029-0.055] unit increase	Affymetrix [321788] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	11q13.2	NR	rs4988321-?	0.961959678679704	2E-6		0.13319609	[0.079-0.188] SD units increase	Illumina [11603265] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	LRP5	rs4988321-G	0.94945	2E-35		0.0557332	[0.047-0.065] unit increase	NR [13737936] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs4988321-?	NR	2E-87		0.0877002	[0.079-0.097] unit increase	Affymetrix [20259828] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs4988321-G	0.948615	2E-11	(men)	0.0751909	[0.053-0.098] unit increase	NR [17166351] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs4988321-G	0.948585	3E-23		0.0728955	[0.058-0.088] unit increase	NR [17166351] (imputed)	N
1105	chr11	68174188	68174189	rs4988321	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.2	LRP5	rs4988321-G	0.948559	7E-15	(women)	0.0761789	[0.056-0.097] unit increase	NR [17166351] (imputed)	N
1105	chr11	68183214	68183214	rs61582735	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs61582735-?	NR	6E-15		0.120282	[0.088-0.152] unit decrease	Affymetrix [20259828] (imputed)	N
1105	chr11	68191946	68191947	rs880610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	11q13.2		rs880610-A	NR	2E-9		0.0843	[0.057-0.112] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
1105	chr11	68192345	68192346	rs599083	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	11q13.2	LRP5	rs599083-G	0.31	5E-8		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1105	chr11	68192517	68192518	rs554734	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11q13.2	LRP5	rs554734-T	0.69	3E-17		0.0695	[0.053-0.086] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1105	chr11	68192517	68192518	rs554734	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11q13.2	LRP5	rs554734-T	0.69	4E-7		0.037	[0.023-0.051] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1105	chr11	68195103	68195104	rs525592	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	11q13.2	LRP5	rs525592-?	NR	3E-11	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
1105	chr11	68196604	68196605	rs577482058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Polymyositis	58 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	11q13.2		rs577482058-T	7.6653E-4	6E-9		68.96109	[45.7-92.23] unit increase	Illumina [13429616] (imputed)	N
1105	chr11	68196604	68196605	rs577482058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Polymyositis	44 European ancestry cases, 350,228 European ancestry controls, 58 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	11q13.2		rs577482058-T	NR	6E-9		68.9611	[45.7-92.23] unit increase	Affymetrix, Illumina [20457706] (imputed)	N
1105	chr11	68201294	68201295	rs3736228	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	11q13.2	NR	rs3736228-T	0.153692	1E-9		0.08362	[0.057-0.11] unit decrease	Affymetrix [21375087] (imputed)	N
1105	chr11	68201294	68201295	rs3736228	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	11q13.2	LRP5	rs3736228-T	0.15	1E-21		1.06	[1.05-1.08]	Affymetrix, Illumina [2539801] (imputed)	N
1105	chr11	68201294	68201295	rs3736228	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	11q13.2	LRP5	rs3736228-T	0.16	2E-26		0.08	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1105	chr11	68201294	68201295	rs3736228	18455228	Richards JB	2008-04-29	Lancet	Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study.	Bone mineral density	2,094 European ancestry female individuals	6,463 European ancestry individuals	11q13.2	LRP5	rs3736228-T	0.14	6E-12		0.13	[NR] SD decrease	Illumina [314075]	N
1105	chr11	68211377	68211378	rs56154705	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Osteoporosis	5,399 European ancestry cases, 51,238 European ancestry controls	NA	11q13.2		rs56154705-T	0.1434993	9E-10		1.21		Affymetrix [15544346] (imputed)	N
1105	chr11	68216755	68216756	rs2291467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q13.2	Intergenic	rs2291467-T	0.2539	3E-10	(MTAG)	0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr11	68216755	68216756	rs2291467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q13.2	Intergenic	rs2291467-C	0.7461	5E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1105	chr11	68216755	68216756	rs2291467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.2	Intergenic	rs2291467-T	0.2543	1E-13	(MTAG)	0.0141	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr11	68216755	68216756	rs2291467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q13.2	Intergenic	rs2291467-C	0.7457	7E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	11q13.2	LRP5	rs11228240-T	0.276044	1E-9		0.10860022	[0.073-0.144] unit increase	Affymetrix [7288503] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.2	LRP5	rs11228240-C	0.725559	2E-54		0.0344699	[0.03-0.039] unit increase	NR [13737936] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs11228240-?	NR	3E-92				NR [~ 8900000] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	11q13.2	NR	rs11228240-T	0.254	1E-13		0.0848	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	11q13.2	NR	rs11228240-T	0.2576	3E-8		0.0974	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.2	NR	rs11228240-T	0.2601	4E-31	(European)	0.0842	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68218289	68218290	rs11228240	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.2	NR	rs11228240-T	0.2574	2E-35		0.083	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68218730	68218731	rs510772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.2		rs510772-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1105	chr11	68220904	68220905	rs57502260	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	11q13.2	NR	rs57502260-A	0.8295	2E-13		0.1088	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68223748	68223748	rs762246412	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs762246412-?	NR	5E-75		0.0514826	[0.046-0.057] unit increase	Affymetrix [20259828] (imputed)	N
1105	chr11	68224411	68224422	rs138341189	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	11q13.2	LRP5, PPP6R3	rs138341189-?	NR	2E-9		0.035	[0.023-0.046] unit increase	Illumina [12039491] (imputed)	N
1105	chr11	68250418	68250419	rs12365160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.2	NR	rs12365160-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1105	chr11	68252122	68252123	rs12364620	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	11q13.2	NR	rs12364620-T	0.7508	1E-8		0.0848	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1105	chr11	68263369	68263370	rs12272917	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	11q13.2	LRP5, PPP6R3	rs12272917-C	0.24	1E-9		0.0971	[NR] unit decrease	Illumina [2276811] (imputed)	N
1105	chr11	68263369	68263370	rs12272917	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	11q13.2	PPP6R3, LRP5	rs12272917-T	NR	2E-10	(EA)	0.1213	[0.084-0.159] unit increase	Illumina [~ 2500000] (imputed)	N
1105	chr11	68263369	68263370	rs12272917	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	11q13.2	PPP6R3, LRP5	rs12272917-T	0.75	1E-10		0.109	[0.076-0.142] unit increase	Illumina [~ 2500000] (imputed)	N
1105	chr11	68278538	68278538	rs375246532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q13.2		rs375246532-CT	NR	4E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1105	chr11	68278553	68278553	rs59968909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q13.2	PPP6R3	rs59968909-CT	0.272713	1E-15		0.0224047	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1105	chr11	68278553	68278553	rs59968909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q13.2	PPP6R3	rs59968909-CT	0.272731	2E-13		0.01851236	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1105	chr11	68282985	68282986	rs73518807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.2		rs73518807-C	0.2609	1E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1106	chr11	68295902	68295903	rs57008984	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	11q13.2	NR	rs57008984-T	0.125449	7E-9		0.0968859	[0.065-0.129] unit decrease	Affymetrix [21375087] (imputed)	N
1106	chr11	68300790	68300791	rs118074499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.2		rs118074499-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1106	chr11	68310871	68310871	rs58332211	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs58332211-?	NR	2E-52		0.0318014	[0.027-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
1106	chr11	68310884	68310884	rs397795915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q13.2		rs397795915-GT	NR	3E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1106	chr11	68319488	68319489	rs12284933	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	11q13.2	Intergenic	rs12284933-A	0.24	2E-9				Illumina [2276811] (imputed)	N
1106	chr11	68335477	68335478	rs6591341	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Lean body mass	8,327 European ancestry individuals, 2,087 individuals	NA	11q13.2	intergenic	rs6591341-T	0.28	2E-6		0.0741	[NR] unit decrease	Illumina [2276811] (imputed)	N
1106	chr11	68342401	68342402	rs75356449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.2		rs75356449-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1106	chr11	68357367	68357368	rs10896348	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q13.2	PPP6R3	rs10896348-T	0.723747	3E-14		0.0118678	[0.0088-0.0149] unit increase	Affymetrix [12370749]	N
1106	chr11	68367192	68367193	rs3758643	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.2	Intergenic	rs3758643-T	0.2544	2E-11	(MTAG)	0.0101	[0.0072-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1106	chr11	68369959	68369960	rs7927592	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.2	NR	rs7927592-A	0.2633	1E-33		0.0781	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1106	chr11	68369959	68369960	rs7927592	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.2	NR	rs7927592-A	0.2632	3E-29	(European)	0.0791	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1106	chr11	68371657	68371658	rs12283755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.2	NR	rs12283755-G	0.278134	2E-18				Affymetrix, Illumina [20825802] (imputed)	N
1106	chr11	68371657	68371658	rs12283755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q13.2	NR	rs12283755-G	0.278862	3E-21		0.020348	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1106	chr11	68371657	68371658	rs12283755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q13.2		rs12283755-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1106	chr11	68371657	68371658	rs12283755	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	11q13.2	Intergenic	rs12283755-G	0.25	4E-9		0.0942	[NR] unit decrease	Illumina [2276811] (imputed)	N
1106	chr11	68378044	68378045	rs2236708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.2		rs2236708-A	0.2544	2E-8	(conditional-joint)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1106	chr11	68385578	68385579	rs7102273	30888730	Hsu YH	2019-03-19	J Bone Miner Res	Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.	Femoral neck section modulus	18,719 individuals	8,334 individuals	11q13.2	LRP5, PPP6R3, GAL	rs7102273-?		4E-11		6.595	NR z score increase	Affymetrix, Illumina [up to 2622085] (imputed)	N
1106	chr11	68388219	68388220	rs7129320	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.2	AP003096.1	rs7129320-A	0.1661	7E-53		0.0389	[0.034-0.044] unit decrease	Affymetrix [18391927] (imputed)	N
1106	chr11	68388219	68388220	rs7129320	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11q13.2	NR	rs7129320-A	0.166513	2E-16		0.0732286	[0.055-0.091] unit decrease	Affymetrix [17914406] (imputed)	N
1106	chr11	68389900	68389901	rs35989399	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	11q13.2	PPP6R3	rs35989399-C	0.8438	8E-44		0.0573	[0.049-0.065] unit decrease	NR [13977204] (imputed)	N
1106	chr11	68391730	68391731	rs2510382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	11q13.2		rs2510382-A	NR	7E-10		0.102	[0.07-0.134] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1106	chr11	68397084	68397085	rs2510376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q13.2		rs2510376-A	0.326911	5E-11		0.015619261	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1106	chr11	68399484	68399485	rs146672695	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	11q13.2	PPP6R3	rs146672695-A	0.05	2E-6		2.39	[1.39-3.39] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1106	chr11	68400952	68400953	rs2510375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q13.2	NR	rs2510375-T	0.881127	3E-11		0.019562	[0.014-0.025] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1106	chr11	68402219	68402220	rs2510372	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q13.2	PPP6R3, GAL	rs2510372-G	0.880986	2E-14	(cerotoylcarnitine (C26)*)	0.272	[0.2-0.34] unit decrease	Illumina [13039987] (imputed)	N
1106	chr11	68406323	68406324	rs190728176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.2	AP003096.1	rs190728176-A	NR	5E-8		0.0412828	[0.026-0.056] unit increase	Affymetrix [321788] (imputed)	N
1106	chr11	68409889	68409890	rs7926413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.2	AP003096.1	rs7926413-G	NR	6E-9		0.0184349	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
1106	chr11	68417651	68417652	rs2510396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.2		rs2510396-?	NR	1E-43				NR [~ 8900000] (imputed)	N
1107	chr11	68421415	68421416	rs2510398	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.2	GAL	rs2510398-A	0.8516	8E-6		0.0401	[0.022-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1107	chr11	68425094	68425095	rs2510405	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.2		rs2510405-?	NR	3E-38		0.0316015	[0.026-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
1107	chr11	68472465	68472466	rs2276267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs2276267-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1107	chr11	68498913	68498913	rs5792449	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11q13.3	NR	rs5792449-TA	0.799387	2E-9		0.0513722	[0.035-0.068] unit increase	Affymetrix [17914406] (imputed)	N
1107	chr11	68522052	68522053	rs3018712	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.3	NR	rs3018712-A	0.1787	4E-11		0.052	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1107	chr11	68524052	68524053	rs2278907	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.3	NR	rs2278907-A	0.5455	3E-8	(European)	0.0357	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1107	chr11	68546531	68546532	rs186065533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.3		rs186065533-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1108	chr11	68556781	68556782	rs2924679	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.3	CPT1A	rs2924679-A	0.094	4E-6	(Fat oxidation )	0.03	[NR] %NPEE increase	Illumina [899892]	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-9		0.0475374	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933944	2E-11		0.053804	[0.038-0.07] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-8		0.0457555	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-13		0.058415	[0.043-0.074] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-10		0.0499051	[0.035-0.065] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	6E-11		0.0530768	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-11		0.0545908	[0.039-0.07] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-10		0.0512378	[0.036-0.067] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	5E-9		0.0467775	[0.031-0.062] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-9		0.0475875	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	8E-23		0.0782211	[0.063-0.094] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	1E-24		0.081354	[0.066-0.097] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	3E-62		0.132135	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	2E-77		0.147282	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	5E-23		0.0783198	[0.063-0.094] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	4E-58		0.128397	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-10		0.0508238	[0.035-0.066] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	3E-9		0.0472642	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	7E-54		0.122179	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	6E-9		0.0477808	[0.032-0.064] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933944	4E-9		0.0473751	[0.032-0.063] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	7E-11		0.0513656	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-14		0.0614457	[0.046-0.077] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	6E-11		0.0512962	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	5E-11		0.0517895	[0.036-0.067] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-11		0.0529956	[0.038-0.068] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-8		0.044298	[0.029-0.06] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	8E-12		0.0562525	[0.04-0.072] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-8		0.0467457	[0.031-0.063] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	3E-9		0.0471092	[0.031-0.063] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	5E-58		0.126023	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933986	4E-64		0.132227	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	8E-9		0.0459453	[0.03-0.062] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	3E-9		0.0461996	[0.031-0.061] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933944	2E-13		0.0583694	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933976	3E-8		0.0456929	[0.03-0.062] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	4E-11		0.051289	[0.036-0.066] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933967	7E-10		0.048964	[0.033-0.065] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	5E-8		0.0429467	[0.028-0.058] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	7E-10		0.0481516	[0.033-0.063] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933944	4E-13		0.0575235	[0.042-0.073] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-10		0.0518476	[0.036-0.068] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	3E-11		0.0517591	[0.037-0.067] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	3E-14		0.0609642	[0.045-0.077] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	2E-8		0.0437677	[0.029-0.059] unit increase	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q13.3		rs2229738-C	0.933964	1E-8		0.045287	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1108	chr11	68562327	68562328	rs2229738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q13.3		rs2229738-T	NR	4E-8		0.0259	[0.017-0.035] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1108	chr11	68592048	68592049	rs78863347	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q13.3	CPT1A	rs78863347-T	0.9637	4E-12	(East Asian)	0.1318	[0.095-0.169] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1108	chr11	68597804	68597805	rs11228374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q13.3		rs11228374-A	NR	2E-16		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1108	chr11	68597804	68597805	rs11228374	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q13.3	CPT1A	rs11228374-?	NR	1E-9		0.0171	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1108	chr11	68597885	68597886	rs11605837	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.3	CPT1A	rs11605837-G	0.685115	1E-17		0.017594	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1108	chr11	68597885	68597886	rs11605837	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.3	CPT1A	rs11605837-G	0.685032	1E-13		0.0157002	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1108	chr11	68598053	68598054	rs7938117	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	11q13.3	CPT1A	rs7938117-?	NR	3E-11				NR [1800000]	N
1108	chr11	68601973	68601974	rs597539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q13.3		rs597539-G	NR	2E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1108	chr11	68601973	68601974	rs597539	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	11q13.3	CPT1A	rs597539-?	NR	8E-6		1.948	[0.74-3.16] unit decrease	Illumina [at least 13000000] (imputed)	N
1108	chr11	68603345	68603346	rs11228377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.3		rs11228377-T	0.406601	2E-8		0.0222532	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1108	chr11	68603345	68603346	rs11228377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.3		rs11228377-T	0.406601	3E-8		0.0222119	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1108	chr11	68603345	68603346	rs11228377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q13.3		rs11228377-T	0.406588	4E-9		0.0240692	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1108	chr11	68603345	68603346	rs11228377	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q13.3	CPT1A	rs11228377-T	0.405978	3E-14		0.0154093	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1108	chr11	68614061	68614062	rs483148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q13.3	NR	rs483148-T	NR	5E-9		0.0335	[0.022-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1108	chr11	68614061	68614062	rs483148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.3	NR	rs483148-T	NR	7E-10		0.0369	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1108	chr11	68617046	68617048	rs753322971	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	11q13.3	NR	rs753322971-C	0.568101	5E-8		0.0379056	[0.024-0.052] unit decrease	Affymetrix [17914406] (imputed)	N
1108	chr11	68617315	68617316	rs11228382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q13.3		rs11228382-T	NR	6E-16		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1108	chr11	68621002	68621003	rs610442	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs610442-C	NR	6E-16	(conditional)	0.061	[0.046-0.076] unit increase	Affymetrix [9869154] (imputed)	N
1108	chr11	68630693	68630694	rs79736377	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.3	NR	rs79736377-C	0.02439	2E-9	(USP5)	0.1173	NR unit increase	Illumina [1671387] (imputed)	N
1109	chr11	68681787	68681788	rs557266652	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.3		rs557266652-?	NR	3E-20		0.390123	[0.3-0.48] unit increase	Affymetrix [20259828] (imputed)	N
1109	chr11	68681787	68681788	rs557266652	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.3	IGHMBP2	rs557266652-A	0.998715	5E-11		0.435354	[0.3-0.57] unit increase	NR [17166351] (imputed)	N
1109	chr11	68681787	68681788	rs557266652	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.3	IGHMBP2	rs557266652-A	0.998646	3E-8	(women)	0.490722	[0.31-0.67] unit increase	NR [17166351] (imputed)	N
1109	chr11	68699774	68699775	rs653264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.3		rs653264-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1109	chr11	68703958	68703959	rs622082	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	11q13.3	NR	rs622082-G	NR	4E-15		0.01575883	[0.012-0.02] unit decrease	Illumina [242289]	N
1109	chr11	68703958	68703959	rs622082	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	11q13.3	NR	rs622082-G	0.31	3E-8		0.018	unit decrease	Illumina [242289]	N
1109	chr11	68722305	68722306	rs10792006	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.3	NR	rs10792006-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1109	chr11	68722305	68722306	rs10792006	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.3	NA	rs10792006-T	0.4527	1E-10		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
1109	chr11	68732025	68732026	rs7940105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.3		rs7940105-?	NR	9E-31				NR [~ 8900000] (imputed)	N
1109	chr11	68749539	68749540	rs10896390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.3	NR	rs10896390-C	NR	3E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1109	chr11	68749539	68749540	rs10896390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q13.3	NR	rs10896390-C	NR	1E-12		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1109	chr11	68789605	68789606	rs11603763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q13.3	RP11-554A11.6	rs11603763-A	0.363818	4E-9		0.01360092	[0.0091-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr11	68804085	68804086	rs2924521	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11q13.3	Intergenic	rs2924521-G	NR	2E-6		0.0255701	[0.015-0.036] unit increase	Illumina [13520550] (imputed)	N
1109	chr11	68804336	68804337	rs181421375	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	11q13.3		rs181421375-G	0.003326	2E-10		0.36	[0.25-0.47] unit increase	NR [11842647] (imputed)	N
1110	chr11	68816369	68816370	rs4930642	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q13.3	TPCN2	rs4930642-A	0.252	6E-13		1.145	[1.11-1.18]	Illumina [11270530] (imputed)	N
1110	chr11	68817049	68817050	rs61057353	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11q13.3		rs61057353-G	0.3033	8E-7		0.036019	[0.022-0.05] unit increase	Affymetrix [15580782] (imputed)	N
1110	chr11	68817440	68817441	rs72917317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.3		rs72917317-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1110	chr11	68817440	68817441	rs72917317	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.3	TPCN2	rs72917317-G	0.1064	2E-308		1.545	NR	Affymetrix [9154080] (imputed)	N
1110	chr11	68817440	68817441	rs72917317	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q13.3	TPCN2	rs72917317-G	NR	1E-29		0.163	[0.069-0.257] unit increase	Affymetrix [8351141] (imputed)	N
1110	chr11	68817440	68817441	rs72917317	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	11q13.3	TPCN2	rs72917317-T	0.097	1E-100		0.176	[0.17-0.18] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1110	chr11	68817896	68817897	rs150527451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q13.3		rs150527451-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1110	chr11	68820005	68820006	rs117197680	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	11q13.3		rs117197680-A	0.008551	2E-10		0.23	[0.16-0.3] unit increase	NR [11842647] (imputed)	N
1110	chr11	68821647	68821648	rs12285715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	TPCN2	rs12285715-C	NR	3E-8		0.0170725	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1110	chr11	68821946	68821947	rs6591367	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	11q13.3		rs6591367-T	0.001515	3E-9		0.31	[0.21-0.41] unit increase	NR [11842647] (imputed)	N
1110	chr11	68831363	68831364	rs72928978	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11q13.3	TPCN2	rs72928978-A	0.1076	6E-48		1.391	NR	Affymetrix [9154080] (imputed)	N
1110	chr11	68831363	68831364	rs72928978	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11q13.3	TPCN2	rs72928978-G	0.89	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
1110	chr11	68831363	68831364	rs72928978	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11q13.3	TPCN2	rs72928978-G	0.89	5E-7		1.05	[1.02-1.07]	Affymetrix, Illumina [247470]	N
1110	chr11	68835181	68835182	rs10750840	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.3	NR	rs10750840-T	0.5524	5E-10		0.0239	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1110	chr11	68837056	68837057	rs549361352	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.3		rs549361352-?	NR	6E-23		0.0315298	[0.025-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1110	chr11	68838470	68838471	rs9666135	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	TPCN2	rs9666135-G	NR	3E-9		0.0175776	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1110	chr11	68838470	68838471	rs9666135	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	TPCN2	rs9666135-G	NR	2E-14		0.0218572	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
1110	chr11	68840159	68840160	rs3750965	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	11q13.3	NR	rs3750965-?	NR	3E-7	(hair color)			Illumina [535076]	N
1110	chr11	68843714	68843715	rs113966765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.3	NR	rs113966765-A	NR	3E-11		0.042	[0.03-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1110	chr11	68843714	68843715	rs113966765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	11q13.3	NR	rs113966765-A	NR	1E-13		0.0473	[0.035-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1110	chr11	68843714	68843715	rs113966765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.3	NR	rs113966765-A	NR	2E-11		0.0425	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1110	chr11	68846398	68846399	rs35264875	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11q13.3	TPCN2	rs35264875-A	0.827	2E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [247470]	N
1110	chr11	68846398	68846399	rs35264875	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11q13.3	TPCN2	rs35264875-A	0.827	2E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [247470]	N
1110	chr11	68846398	68846399	rs35264875	18488028	Sulem P	2008-05-18	Nat Genet	Two newly identified genetic determinants of pigmentation in Europeans.	Blond vs. brown hair color	5,130 European ancestry individuals	3,330 European ancestry individuals	11q13.3	TPCN2	rs35264875-T	0.22	4E-30		2.49	[1.96-3.15]	Illumina [316515]	N
1110	chr11	68848915	68848916	rs34510004	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	11q13.3		rs34510004-A	0.00167	2E-28		0.67	[0.55-0.79] unit decrease	NR [11842647] (imputed)	N
1110	chr11	68848915	68848916	rs34510004	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	11q13.3		rs34510004-A	0.0011	2E-51		1.59	[1.38-1.8] unit increase	NR [11842647] (imputed)	N
1110	chr11	68848915	68848916	rs34510004	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.3	MIR3164, TYR	rs34510004-A	0.001323	8E-59		3.434	NR	Affymetrix [9154080] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.3	TPCN2	rs3829241-A	NR	1E-8		0.0177739	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.3	TPCN2	rs3829241-G	0.5943	8E-62		0.031109	[0.027-0.035] unit decrease	NR [13737936] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.3		rs3829241-?	NR	3E-63				NR [~ 8900000] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.3	TPCN2	rs3829241-A	0.4065	5E-188		1.269	NR	Affymetrix [9154080] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.3		rs3829241-?	NR	9E-51		0.0304472	[0.026-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.3	TPCN2	rs3829241-G	0.598459	6E-13	(women)	0.031641	[0.022-0.041] unit decrease	NR [17166351] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.3	TPCN2	rs3829241-G	0.597728	5E-21		0.0305759	[0.024-0.037] unit decrease	NR [17166351] (imputed)	N
1110	chr11	68855362	68855363	rs3829241	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q13.3	TPCN2	rs3829241-G	0.596891	2E-9	(men)	0.0299726	[0.02-0.04] unit decrease	NR [17166351] (imputed)	N
1110	chr11	68855594	68855595	rs1060435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	TPCN2	rs1060435-G	NR	4E-9		0.0175833	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1110	chr11	68855594	68855595	rs1060435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	TPCN2	rs1060435-G	NR	4E-15		0.0225766	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1110	chr11	68855594	68855595	rs1060435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs1060435-?	NR	5E-34				NR [~ 8900000] (imputed)	N
1110	chr11	68855594	68855595	rs1060435	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11q13.3	TPCN2	rs1060435-G	0.4083	1E-32		1.164	NR	Affymetrix [9154080] (imputed)	N
1110	chr11	68859869	68859869	rs59578717	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q13.3		rs59578717-?	NR	4E-8		0.91	[0.88-0.94]	NR [13810676] (imputed)	N
1110	chr11	68860871	68860872	rs11228490	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q13.3	NR	rs11228490-C	0.33	3E-8		0.0107	[0.0068-0.0146] unit decrease	NR [NR]	N
1110	chr11	68866744	68866745	rs72930621	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	11q13.3	BC064339	rs72930621-T	0.16	3E-8		0.391	[0.25-0.53] unit increase	Affymetrix [NR] (imputed)	N
1110	chr11	68869033	68869034	rs921675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-554A11.7	rs921675-A	NR	3E-8		0.021505	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1110	chr11	68872842	68872843	rs72930659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q13.3		rs72930659-T	NR	7E-16		0.0265	[0.02-0.033] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1110	chr11	68872842	68872843	rs72930659	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11q13.3	RP11-554A11.7	rs72930659-C	0.895057	4E-278				Affymetrix, Illumina [NR] (imputed)	N
1110	chr11	68872842	68872843	rs72930659	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	11q13.3	TPCN2	rs72930659-?	0.109	3E-13		1.6087	[1.48-1.74]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1110	chr11	68872842	68872843	rs72930659	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	11q13.3	TPCN2	rs72930659-?	0.109	1E-11		1.5544	[1.43-1.68]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1110	chr11	68872842	68872843	rs72930659	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	11q13.3	TPCN2	rs72930659-?	0.891	3E-14		1.65	[1.52-1.78]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1110	chr11	68882925	68882926	rs3018690	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.3	NR	rs3018690-T	NR	8E-11		1.046	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1110	chr11	68883555	68883556	rs7131509	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	11q13.3	TPCN2, LOC107984345	rs7131509-C	0.5311	3E-10		6.312	NR z score decrease	Illumina [26237160] (imputed)	N
1110	chr11	68884542	68884543	rs3018691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q13.3		rs3018691-T	NR	2E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1110	chr11	68884754	68884755	rs3892895	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q13.3	TPCN2	rs3892895-A	0.3993	1E-13		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1110	chr11	68893760	68893761	rs2054002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q13.3		rs2054002-C	NR	9E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1110	chr11	68894752	68894753	rs12284087	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	11q13.3	RP11-554A11.7	rs12284087-?		4E-10				Illumina [5041948] (imputed)	N
1110	chr11	68897089	68897089	rs34348066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-554A11.8	rs34348066-TA	NR	3E-8		0.0172347	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1110	chr11	68903464	68903465	rs10896437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q13.3	NR	rs10896437-C	0.303981	6E-9		0.014065945	[0.0093-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1110	chr11	68903464	68903465	rs10896437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q13.3		rs10896437-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1110	chr11	68906119	68906120	rs72932523	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	11q13.3		rs72932523-G	NR	2E-10		0.446379	[0.31-0.58] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1110	chr11	68906119	68906120	rs72932523	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	11q13.3	TPCN2	rs72932523-A	0.10565	1E-9		0.0601	[0.041-0.08] unit increase	Illumina [NR]	N
1110	chr11	68907001	68907002	rs7928319	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 120)	19,670 European ancestry individuals	NA	11q13.3		rs7928319-?	NR	2E-8				NR [9705931] (imputed)	N
1110	chr11	68908814	68908815	rs34662054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q13.3	NR	rs34662054-C	0.299106	5E-12		0.014295	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1110	chr11	68911499	68911500	rs3018695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q13.3	NR	rs3018695-A	0.492988	9E-14		0.00871939	[0.0063-0.0112] unit increase	Affymetrix [16585854] (imputed)	N
1110	chr11	68911499	68911500	rs3018695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q13.3	NR	rs3018695-A	0.492988	2E-9		0.00804239	[0.0053-0.0108] unit increase	Affymetrix [16585866] (imputed)	N
1110	chr11	68912220	68912221	rs3018667	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q13.3	LOC338694	rs3018667-A	0.3246	8E-11		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1110	chr11	68919648	68919649	rs2290419	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	11q13.3	TPCN2, CCND1	rs2290419-G	0.044	3E-7		0.18	[NR] unit decrease	Affymetrix, Illumina [at least 1569314] (imputed)	N
1110	chr11	68922042	68922043	rs72932540	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q13.3	NR	rs72932540-G	NR	5E-20		0.135	[0.047-0.223] unit increase	Affymetrix [8351141] (imputed)	N
1110	chr11	68922042	68922043	rs72932540	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.3	NR	rs72932540-G	0.1056	4E-8	(EA)	0.0553	[0.036-0.075] unit increase	Illumina [~ 11800000] (imputed)	N
1110	chr11	68923596	68923597	rs3019751	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs3019751-T	NR	2E-7		1.097	[1.06-1.137]	Affymetrix [7846216] (imputed)	N
1110	chr11	68924340	68924341	rs2924523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-554A11.8, RP11-554A11.9	rs2924523-A	NR	7E-9		0.0180629	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1110	chr11	68924340	68924341	rs2924523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.3	RP11-554A11.8, RP11-554A11.9	rs2924523-A	NR	1E-8		0.0193354	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1110	chr11	68926521	68926522	rs12418948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs12418948-T	0.235823	2E-15				Affymetrix, Illumina [24588908] (imputed)	N
1110	chr11	68935418	68935419	rs12418451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q13.3		rs12418451-A	NR	1E-8		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1110	chr11	68935418	68935419	rs12418451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.3	NR	rs12418451-A	0.295579	2E-16		0.016429	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1110	chr11	68935551	68935552	rs11228540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.3	RP11-554A11.8	rs11228540-A	NR	2E-9		0.0188542	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1110	chr11	68941191	68941192	rs79721202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	11q13.3		rs79721202-G	NR	5E-25		0.1349	[0.11-0.16] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1110	chr11	68941191	68941192	rs79721202	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	11q13.3	LOC338694	rs79721202-?	0.094	5E-28		1.1878403	[1.15-1.23]	Affymetrix [NR] (imputed)	N
1110	chr11	68942162	68942162	rs150648223	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	11q13.3	5' LOC338694	rs150648223-ATTT	NR	2E-22	(female)	1.0785	[1.06-1.09]	Affymetrix [9869154] (imputed)	N
1110	chr11	68942162	68942162	rs150648223	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	11q13.3	5' LOC338694	rs150648223-ATTT	NR	1E-42	(male)	1.1308	[1.11-1.15]	Affymetrix [9869154] (imputed)	N
1110	chr11	68942162	68942162	rs150648223	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	11q13.3	NR	rs150648223-ATTT	NR	2E-40		1.1642		Affymetrix [9869154] (imputed)	N
1110	chr11	68942162	68942162	rs150648223	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	11q13.3	LOC338694	rs150648223-ATTT	NR	7E-60		1.1	[1.09-1.11]	Affymetrix [9869154] (imputed)	N
1111	chr11	68947542	68947543	rs9651718	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.3		rs9651718-C	0.29	1E-12		7.09	z score increase	Affymetrix [9061022] (imputed)	N
1111	chr11	68947542	68947543	rs9651718	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q13.3		rs9651718-C	0.29	1E-8		5.69	z score increase	Affymetrix [9061022] (imputed)	N
1111	chr11	68949605	68949606	rs4930659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.3	RP11-554A11.8	rs4930659-G	NR	1E-8		0.0174514	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1111	chr11	68952557	68952558	rs140855736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs140855736-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1111	chr11	68960390	68960391	rs12223972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs12223972-G	0.276059	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1111	chr11	68964573	68964574	rs11602052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.3		rs11602052-G	0.517906	4E-16		0.019156702	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1111	chr11	68964573	68964574	rs11602052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.3		rs11602052-G	0.517901	3E-13		0.01713365	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1111	chr11	68964573	68964574	rs11602052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.3		rs11602052-C	0.48216	4E-11		0.015385318	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1111	chr11	68968148	68968149	rs78977588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.3	RP11-554A11.8	rs78977588-A	NR	1E-10		0.0308042	[0.021-0.04] unit increase	Affymetrix [323123] (imputed)	N
1111	chr11	68968148	68968149	rs78977588	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	11q13.3	MYEOV	rs78977588-A	0.12	6E-9		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1111	chr11	68972713	68972714	rs61881108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-554A11.8	rs61881108-A	NR	5E-10		0.0277681	[0.019-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	68972713	68972714	rs61881108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	RP11-554A11.8	rs61881108-A	NR	2E-10		0.0285412	[0.02-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	68978579	68978580	rs11228565	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	11q13.3	intergenic	rs11228565-A	0.20	7E-12		1.23	[1.16-1.31]	Illumina [310520]	N
1111	chr11	68980334	68980335	rs4620729	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	11q13.3		rs4620729-A	0.042733555	5E-9		1.3472441	[1.219369485-1.488529074]	Illumina [8919992] (imputed)	N
1111	chr11	68980787	68980788	rs11825796	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.3	NR	rs11825796-A	NR	5E-27		1.094	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1111	chr11	68981358	68981359	rs12275055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	11q13.3		rs12275055-G	NR	8E-44		0.2801	[0.24-0.32] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1111	chr11	68981358	68981359	rs12275055	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs12275055-G	NR	1E-36		1.2623074	NR	Affymetrix [7846216] (imputed)	N
1111	chr11	68981358	68981359	rs12275055	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs12275055-G	NR	9E-33		1.25	[1.2-1.3]	Affymetrix [7846216] (imputed)	N
1111	chr11	68984601	68984602	rs10792032	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	11q13.3	BCL11A	rs10792032-?		2E-12				NR [7428630] (imputed)	N
1111	chr11	68984601	68984602	rs10792032	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q13.3	HHIP, ANAPC10, ABCE1, OTUD4	rs10792032-?		1E-10				NR [7428630] (imputed)	N
1111	chr11	68984601	68984602	rs10792032	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	11q13.3	MARCH4, SMARCAL1, RPL37A	rs10792032-?		5E-12				NR [7428630] (imputed)	N
1111	chr11	68984601	68984602	rs10792032	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	11q13.3	NR	rs10792032-A	0.4872	1E-14		7.707	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1111	chr11	68985582	68985583	rs7929962	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	11q13.3	LOC338694, MYEOV	rs7929962-T	0.51	2E-13		1.15	[1.11-1.19]	Illumina [1531807] (imputed)	N
1111	chr11	68987903	68987903	rs35024453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	RP11-554A11.8	rs35024453-CT	NR	3E-9		0.0252411	[0.017-0.034] unit decrease	Affymetrix [321788] (imputed)	N
1111	chr11	68992284	68992285	rs12795301	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	11q13.3	RP11-554A11.8, MYEOV	rs12795301-A	0.098	3E-8		1.42	[1.25-1.61] unit increase	Illumina [185478]	N
1111	chr11	68994496	68994497	rs7931342	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q13.3	NR	rs7931342-G	0.5	1E-86		1.17	[1.15-1.19]	Illumina [20370935] (imputed)	N
1111	chr11	68994496	68994497	rs7931342	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	11q13.3	Intergenic	rs7931342-G	NR	4E-14	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1111	chr11	68994496	68994497	rs7931342	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	11q13.3	NR	rs7931342-G	NR	1E-6		1.3	[NR]	Illumina [2639562] (imputed)	N
1111	chr11	68994496	68994497	rs7931342	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	11q13.3	intergenic	rs7931342-G	0.51	2E-12		1.19	[1.11-1.27]	Illumina [541129]	N
1111	chr11	68994666	68994667	rs10896449	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	11q13.3	NR	rs10896449-G	NR	4E-33		1.19	NR	Affymetrix [at least 232408] (imputed)	N
1111	chr11	68994666	68994667	rs10896449	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	11q13.3	NR	rs10896449-G	0.52	8E-18	(European)	1.21	[1.16-1.26]	Affymetrix [up to 19977088] (imputed)	N
1111	chr11	68994666	68994667	rs10896449	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	11q13.3	NR	rs10896449-G	0.52	5E-19		1.2	[1.15-1.24]	Affymetrix [up to 19977088] (imputed)	N
1111	chr11	68994666	68994667	rs10896449	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	11q13.3	intergenic	rs10896449-G	0.52	2E-9		1.1	[0.98-1.23]	Illumina [527869]	N
1111	chr11	68995957	68995958	rs7130881	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	11q13.3		rs7130881-?	NR	4E-36		1.30876	[1.27-1.35]	NR [680312]	N
1111	chr11	68995957	68995958	rs7130881	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	11q13.3	intergenic	rs7130881-G	NR	9E-9		1.31	[1.20-1.44]	Illumina [571243]	N
1111	chr11	68995957	68995958	rs7130881	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	11q13.3	NR	rs7130881-?	NR	8E-13				Illumina [541129]	N
1111	chr11	68997224	68997225	rs61881115	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q13.3	CCND1	rs61881115-G	0.838	4E-7		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1111	chr11	69002341	69002342	rs11228580	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	11q13.3	NR	rs11228580-C	0.171570634	2E-25		1.2797145	[1.22-1.34]	Affymetrix, Illumina [20400945] (imputed)	N
1111	chr11	69002341	69002342	rs11228580	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.3	NR	rs11228580-C	NR	5E-125		1.27	[1.25-1.29]	Affymetrix, Illumina [29235255] (imputed)	N
1111	chr11	69002341	69002342	rs11228580	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	11q13.3	NR	rs11228580-C	0.158	4E-24		1.31	[1.24-1.38]	Affymetrix, Illumina [18877980] (imputed)	N
1111	chr11	69006167	69006168	rs143082869	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	11q13.3	MYEOV	rs143082869-G	4.0E-4	1E-31		27.6192	[22.99-32.25] mmHg increase	Affymetrix [NR] (imputed)	N
1111	chr11	69007678	69007679	rs61881138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs61881138-A	NR	2E-8		0.0224627	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1111	chr11	69007678	69007679	rs61881138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs61881138-A	NR	2E-8		0.0223549	[0.015-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1111	chr11	69007678	69007679	rs61881138	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs61881138-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1111	chr11	69009113	69009114	rs11228583	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	11q13.3	MYEOV	rs11228583-T	0.52	2E-7		1.33	[1.22-1.44]	Illumina [2639562] (imputed)	N
1111	chr11	69011692	69011693	rs376592364	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	11q13.3	NR	rs376592364-T	0.52	6E-20		1.2	[1.16-1.25]	Affymetrix [up to 19977088] (imputed)	N
1111	chr11	69012243	69012244	rs12270641	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	11q13.3	MYEOV	rs12270641-T	0.45	1E-11		1.4	[1.27-1.55]	Illumina [~ 9400000] (imputed)	N
1111	chr11	69018587	69018588	rs11606813	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q13.3	LOC338694, MYEOV	rs11606813-?	NR	2E-22		1.5371	[1.21-1.87] unit increase	Affymetrix [11100000] (imputed)	N
1111	chr11	69034246	69034247	rs72930270	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930270-G	NR	3E-9		0.0324564	[0.022-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69036596	69036597	rs35637432	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs35637432-A	NR	8E-7		1.2315271	[1.13-1.34]	Affymetrix [7846216] (imputed)	N
1111	chr11	69037822	69037823	rs4638315	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	11q13.3	MYEOV	rs4638315-A	0.29	6E-7	(All herpes viruses)	0.22	[NR] unit increase	Illumina [944565]	N
1111	chr11	69038231	69038232	rs10750846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10750846-C	NR	4E-10		0.0187803	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1111	chr11	69038231	69038232	rs10750846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10750846-C	NR	3E-11		0.0192709	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1111	chr11	69040667	69040668	rs72930274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930274-T	NR	1E-14		0.0323834	[0.024-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69040667	69040668	rs72930274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930274-T	NR	4E-15		0.0330698	[0.025-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69040667	69040668	rs72930274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930274-T	NR	2E-8		0.0245659	[0.016-0.033] unit increase	Affymetrix [321788] (imputed)	N
1111	chr11	69045734	69045735	rs12798693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12798693-G	NR	4E-9		0.0168975	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1111	chr11	69045734	69045735	rs12798693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12798693-G	NR	4E-8		0.0157674	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1111	chr11	69052060	69052061	rs61881146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs61881146-C	NR	1E-8		0.0216207	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1111	chr11	69056259	69056260	rs10047435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10047435-G	NR	2E-13		0.0222047	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69056259	69056260	rs10047435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10047435-G	NR	3E-14		0.0229679	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69056259	69056260	rs10047435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10047435-G	NR	3E-14		0.0230542	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1111	chr11	69056259	69056260	rs10047435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10047435-G	NR	1E-10		0.0196499	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1111	chr11	69059609	69059610	rs72930283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930283-G	NR	5E-9		0.0221407	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69059609	69059610	rs72930283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930283-G	NR	8E-10		0.0231856	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69061634	69061635	rs72930287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72930287-A	NR	9E-9		0.0309832	[0.02-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1111	chr11	69070799	69070800	rs4930676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q13.3		rs4930676-T	NR	2E-11		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1111	chr11	69073215	69073216	rs10896460	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	11q13.3	NR	rs10896460-T	0.8125	3E-11		1.11	[1.08-1.14]	Affymetrix, Illumina [7072771] (imputed)	N
1111	chr11	69073419	69073420	rs72930293	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.3	MYEOV, CCND1	rs72930293-C		2E-9		0.234	unit increase	Affymetrix [at least 2696785] (imputed)	N
1111	chr11	69074341	69074342	rs11228620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.3		rs11228620-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1112	chr11	69075537	69075538	rs11605229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q13.3		rs11605229-T	NR	1E-12		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1112	chr11	69075537	69075538	rs11605229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q13.3		rs11605229-T	NR	9E-12		0.0198	[0.014-0.025] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1112	chr11	69076769	69076770	rs72930302	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	11q13.3	MYEOV	rs72930302-A	0.966	6E-7		0.4964	[0.3-0.69] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1112	chr11	69078570	69078571	rs11603814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs11603814-G	NR	3E-10		0.0223252	[0.015-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69078570	69078571	rs11603814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs11603814-G	NR	2E-8		0.019328	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69078793	69078794	rs12807388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12807388-A	NR	1E-12		0.0336686	[0.024-0.043] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69078793	69078794	rs12807388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs12807388-A	NR	1E-9		0.0314437	[0.021-0.042] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69079706	69079707	rs67330701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11q13.3		rs67330701-T	0.268287	3E-8		0.0181168	[0.012-0.024] unit increase	Illumina [13479924] (imputed)	N
1112	chr11	69079706	69079707	rs67330701	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs67330701-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69079706	69079707	rs67330701	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs67330701-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69079706	69079707	rs67330701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q13.3		rs67330701-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1112	chr11	69079706	69079707	rs67330701	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q13.3	MYEOV	rs67330701-T	0.09	2E-12		0.367	[0.27-0.47] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1112	chr11	69079743	69079744	rs117737783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs117737783-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69079743	69079744	rs117737783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.3		rs117737783-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1112	chr11	69079743	69079744	rs117737783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q13.3		rs117737783-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1112	chr11	69081997	69081998	rs34345560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.3		rs34345560-?	NR	3E-34				NR [~ 8900000] (imputed)	N
1112	chr11	69084549	69084550	rs7481709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7481709-C	NR	8E-9		0.0172891	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69084549	69084550	rs7481709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7481709-C	NR	4E-9		0.0176994	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69084549	69084550	rs7481709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7481709-C	NR	2E-12		0.0219143	[0.016-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69084549	69084550	rs7481709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7481709-C	NR	6E-10		0.0185976	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69087549	69087550	rs12808959	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q13.3	NR	rs12808959-C	0.329565	1E-13		0.0244956	[0.018-0.031] unit increase	NR [19129689] (imputed)	N
1112	chr11	69089218	69089219	rs28378931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs28378931-G	NR	1E-9		0.0276144	[0.019-0.037] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69089218	69089219	rs28378931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs28378931-G	NR	2E-10		0.0290454	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69089218	69089219	rs28378931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs28378931-G	NR	1E-11		0.0319916	[0.023-0.041] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69089218	69089219	rs28378931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	MYEOV	rs28378931-A	0.8934	7E-17		0.0245	[0.019-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1112	chr11	69089551	69089552	rs28971643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs28971643-C	NR	4E-11		0.0225552	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69143156	69143157	rs72932177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72932177-T	NR	5E-8		0.0384524	[0.025-0.052] unit decrease	Affymetrix [321114] (imputed)	N
1112	chr11	69143156	69143157	rs72932177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.3	NR	rs72932177-C	0.956079	4E-18		0.0169572	[0.013-0.021] unit increase	Affymetrix [16582909] (imputed)	N
1112	chr11	69143156	69143157	rs72932177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.3	NR	rs72932177-C	0.956079	8E-19		0.0195911	[0.015-0.024] unit increase	Affymetrix [16582965] (imputed)	N
1112	chr11	69143283	69143284	rs7102705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs7102705-A	NR	8E-17		0.0330979	[0.025-0.041] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69143283	69143284	rs7102705	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	11q13.3	MYEOV, CCND1	rs7102705-?	NR	1E-9		0.089	[0.118-0.061] unit decrease	Illumina [12039487] (imputed)	N
1112	chr11	69143283	69143284	rs7102705	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	11q13.3	IFITM9P, CCND1	rs7102705-A	0.211	5E-6		0.086	[0.049-0.123] cup size increase	Illumina [7422970] (imputed)	N
1112	chr11	69148571	69148572	rs6606672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q13.3		rs6606672-A	NR	5E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1112	chr11	69150822	69150823	rs7118260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7118260-A	NR	1E-10		0.0225799	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69150849	69150850	rs7108119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7108119-T	NR	4E-11		0.0232885	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69150849	69150850	rs7108119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7108119-T	NR	1E-16		0.0301738	[0.023-0.037] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69150849	69150850	rs7108119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7108119-T	NR	3E-11		0.0233744	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69150931	69150932	rs72932183	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs72932183-?	NR	7E-18				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69151489	69151490	rs7125498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	11q13.3	NR	rs7125498-C	0.5782	2E-9	(East Asian)	0.2649	[0.18-0.35] unit decrease	Illumina [6200000] (imputed)	N
1112	chr11	69152859	69152860	rs12794313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs12794313-A	NR	3E-13		0.0386421	[0.028-0.049] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69153271	69153272	rs73516616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs73516616-T	NR	9E-9		0.0266422	[0.018-0.036] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69154454	69154455	rs76855873	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	11q13.3	MYEOV	rs76855873-C	0.63	1E-11		3.030303	[2.17-4.17]	Affymetrix [508192]	N
1112	chr11	69154715	69154716	rs9971510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs9971510-T	NR	4E-9		0.0288035	[0.019-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69157359	69157360	rs11263465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs11263465-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1112	chr11	69163160	69163161	rs4357716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs4357716-T	NR	3E-8		0.0231763	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1112	chr11	69163160	69163161	rs4357716	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs4357716-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69170388	69170389	rs12280075	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q13.3	NR	rs12280075-G	0.319901	4E-10		0.00838029	[0.0058-0.011] unit increase	Affymetrix [16585854] (imputed)	N
1112	chr11	69170388	69170389	rs12280075	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q13.3	NR	rs12280075-G	0.319901	8E-8		0.00796534	[0.005-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1112	chr11	69171155	69171156	rs72932191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72932191-A	NR	7E-12		0.0417459	[0.03-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69171982	69171983	rs12273670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12273670-G	NR	8E-15		0.0233007	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69172296	69172297	rs11263521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs11263521-T	NR	5E-8		0.0173113	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69174021	69174022	rs4343053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs4343053-G	NR	1E-8		0.0219461	[0.014-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69175125	69175126	rs72932198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.3	NR	rs72932198-A	NR	3E-10		0.0379	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1112	chr11	69175219	69175220	rs72932201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs72932201-T	NR	2E-10		0.0258935	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1112	chr11	69177137	69177138	rs7938650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7938650-G	NR	8E-9		0.0185176	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69177137	69177138	rs7938650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7938650-G	NR	6E-9		0.0187325	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69177137	69177138	rs7938650	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs7938650-G	NR	2E-13		0.0267128	[0.02-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69178567	69178568	rs12285193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12285193-A	NR	8E-21		0.0312064	[0.025-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69179069	69179070	rs34555010	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MYEOV	rs34555010-?	NR	4E-8		0.45	[NR] unit increase	Affymetrix [NR] (imputed)	N
1112	chr11	69180324	69180325	rs7122622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs7122622-C	NR	5E-12		0.0279543	[0.02-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69181342	69181342	rs10677795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10677795-TACTAA	NR	4E-9		0.0189097	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1112	chr11	69181342	69181342	rs10677795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs10677795-TACTAA	NR	4E-8		0.0176319	[0.011-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1112	chr11	69184066	69184067	rs12293855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12293855-A	NR	2E-13		0.0313873	[0.023-0.04] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69184066	69184067	rs12293855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12293855-A	NR	2E-14		0.0326124	[0.024-0.041] unit increase	Affymetrix [319769] (imputed)	N
1112	chr11	69184066	69184067	rs12293855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	MYEOV	rs12293855-A	NR	3E-12		0.0308451	[0.022-0.04] unit decrease	Affymetrix [321788] (imputed)	N
1112	chr11	69184066	69184067	rs12293855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	11q13.3	MYEOV	rs12293855-A	NR	2E-8		0.0273221	[0.018-0.037] unit decrease	Affymetrix [323858] (imputed)	N
1112	chr11	69190512	69190513	rs56101253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs56101253-A	NR	2E-10		0.025417	[0.018-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1112	chr11	69190512	69190513	rs56101253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs56101253-A	NR	5E-9		0.0242777	[0.016-0.032] unit increase	Affymetrix [321788] (imputed)	N
1112	chr11	69190512	69190513	rs56101253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs56101253-A	NR	3E-10		0.0252938	[0.017-0.033] unit increase	Affymetrix [321016] (imputed)	N
1112	chr11	69192471	69192472	rs61882193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.3	NR	rs61882193-G	NR	2E-9		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1112	chr11	69192471	69192472	rs61882193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q13.3	NR	rs61882193-G	NR	1E-10		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1112	chr11	69194618	69194619	rs4980572	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs4980572-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1112	chr11	69202602	69202603	rs11263639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs11263639-G	NR	2E-11		0.0330525	[0.023-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1112	chr11	69202602	69202603	rs11263639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs11263639-G	NR	8E-10		0.0300107	[0.02-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1112	chr11	69202602	69202603	rs11263639	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs11263639-G	NR	1E-8		0.0282187	[0.019-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69207995	69207996	rs12225128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs12225128-T	NR	3E-8		0.0199241	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69207995	69207996	rs12225128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.2	rs12225128-T	NR	6E-9		0.0208365	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69209363	69209364	rs56094656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.1	rs56094656-A	NR	5E-13		0.0258564	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69214157	69214158	rs56335903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	RP11-211G23.1	rs56335903-T	NR	2E-10		0.0227636	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69231922	69231923	rs4980784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q13.3		rs4980784-G	NR	3E-13		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1113	chr11	69232917	69232918	rs12271237	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs12271237-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69234493	69234494	rs4980785	22010048	Wu X	2011-10-18	Hum Mol Genet	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	11q13.3	NR	rs4980785-?	NR	2E-6				Illumina [533191]	N
1113	chr11	69234654	69234655	rs7939721	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs7939721-C	NR	5E-7		1.5567	NR	Affymetrix [7846216] (imputed)	N
1113	chr11	69238122	69238123	rs11263654	25826619	Henrion MY	2015-03-31	PLoS One	Common variation at 1q24.1 (ALDH9A1) is a potential risk factor for renal cancer.	Renal cell carcinoma	2,215 Western European ancestry cases, 8,566 Western European ancestry controls	2,844 European ancestry cases, 7,270 European ancestry controls	11q13.3	AX746803, AK094674	rs11263654-C	NR	1E-9	(Western European)	1.53	[1.39-1.67]	Illumina [up to 12182133] (imputed)	N
1113	chr11	69239610	69239611	rs4980786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs4980786-C	NR	5E-20		0.0262277	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69239610	69239611	rs4980786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs4980786-C	NR	9E-21		0.0267567	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69239610	69239611	rs4980786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs4980786-C	NR	2E-19		0.0260642	[0.02-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69239610	69239611	rs4980786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs4980786-C	NR	1E-18		0.0255581	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69239740	69239741	rs7105934	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	11q13.3	intergenic	rs7105934-?	NR	3E-8		1.5151515	[1.3-1.79]	Illumina [~ 6000000] (imputed)	N
1113	chr11	69239740	69239741	rs7105934	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	11q13.3	NR	rs7105934-?	0.82	5E-22		1.43	[1.33-1.54]	Illumina [7437091] (imputed)	N
1113	chr11	69239740	69239741	rs7105934	21131975	Purdue MP	2010-12-05	Nat Genet	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	11q13.3	intergenic	rs7105934-?	0.93	8E-14		1.45	[1.32-1.61]	Illumina [586069]	N
1113	chr11	69247353	69247354	rs11263432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs11263432-C	NR	3E-19		0.0263794	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs11263432-C	NR	7E-20		0.0269095	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs11263432-C	NR	3E-17		0.0250554	[0.019-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.1	rs11263432-C	NR	1E-16		0.0246276	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q13.3		rs11263432-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q13.3	NR	rs11263432-T	0.63	4E-25		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q13.3	NR	rs11263432-T	0.63	5E-8				Affymetrix [2446094] (imputed)	N
1113	chr11	69247353	69247354	rs11263432	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q13.3	NR	rs11263432-C	0.359975	2E-18		0.0287067	[0.022-0.035] unit decrease	NR [19129689] (imputed)	N
1113	chr11	69250249	69250250	rs117736811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs117736811-A	NR	5E-9		0.0354056	[0.024-0.047] unit increase	Affymetrix [319769] (imputed)	N
1113	chr11	69250249	69250250	rs117736811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs117736811-A	NR	1E-8		0.0345519	[0.023-0.046] unit increase	Affymetrix [319769] (imputed)	N
1113	chr11	69250249	69250250	rs117736811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs117736811-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69251999	69252000	rs11263441	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q13.3	AK094674	rs11263441-A	0.1161	6E-12		0.4016	[0.29-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
1113	chr11	69253254	69253255	rs11263443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs11263443-T	NR	2E-9		0.0209926	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69253254	69253255	rs11263443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs11263443-T	NR	1E-9		0.0211717	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69253254	69253255	rs11263443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs11263443-T	NR	2E-8		0.0202097	[0.013-0.027] unit increase	Affymetrix [321788] (imputed)	N
1113	chr11	69253485	69253486	rs139866833	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.3	MYEOV, LINC01488	rs139866833-?	NR	2E-8		0.067168914	[0.044-0.091] unit decrease	Illumina [27896057] (imputed)	N
1113	chr11	69255124	69255125	rs61881566	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs61881566-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69258073	69258074	rs7928827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7928827-G	NR	4E-13		0.0209863	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69258073	69258074	rs7928827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7928827-G	NR	1E-12		0.0205419	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69258073	69258074	rs7928827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7928827-G	NR	2E-9		0.0176086	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69258073	69258074	rs7928827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7928827-G	NR	1E-11		0.0198478	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69262382	69262383	rs35269017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs35269017-T	NR	2E-10		0.0225203	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69262382	69262383	rs35269017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs35269017-T	NR	3E-11		0.0234065	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69262382	69262383	rs35269017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs35269017-T	NR	1E-13		0.0262448	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69262382	69262383	rs35269017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs35269017-T	NR	6E-12		0.0244912	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69262755	69262756	rs7395513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q13.3	NR	rs7395513-A	0.4389	9E-27		0.0214	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1113	chr11	69262755	69262756	rs7395513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q13.3	NA	rs7395513-A	0.4389	2E-18		0.0173	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1113	chr11	69262755	69262756	rs7395513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q13.3	NR	rs7395513-A	0.4389	2E-18		0.0173	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7395791-A	NR	5E-18		0.0246229	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7395791-A	NR	1E-17		0.0243659	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7395791-A	NR	7E-12		0.0196468	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.2	rs7395791-A	NR	2E-13		0.0212167	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs7395791-?	NR	4E-26				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs7395791-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69262915	69262916	rs7395791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.3		rs7395791-?	NR	7E-26				NR [~ 8900000] (imputed)	N
1113	chr11	69270231	69270232	rs74664822	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs74664822-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69272095	69272096	rs1938679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q13.3		rs1938679-T	0.321	4E-23		0.0218105	[0.017-0.026] unit decrease	Illumina [13479295] (imputed)	N
1113	chr11	69272095	69272096	rs1938679	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.3	MYEOV, LINC01488	rs1938679-?	NR	4E-25		0.03222282	[0.026-0.038] unit decrease	Illumina [27896057] (imputed)	N
1113	chr11	69272095	69272096	rs1938679	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	11q13.3	CCND1	rs1938679-T	0.33	1E-11		0.032	[0.02-0.044] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1113	chr11	69275431	69275432	rs2002028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.3	AP000439.5	rs2002028-G	NR	4E-8		0.0265254	[0.017-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69275545	69275546	rs7394655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs7394655-G	NR	1E-10		0.0287412	[0.02-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69275545	69275546	rs7394655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs7394655-G	NR	4E-11		0.0295936	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69275545	69275546	rs7394655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs7394655-G	NR	5E-19		0.0402914	[0.031-0.049] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69275545	69275546	rs7394655	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs7394655-G	NR	6E-16		0.0366282	[0.028-0.045] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69275545	69275546	rs7394655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs7394655-?	NR	3E-29				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69279110	69279111	rs11607976	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11q13.3	NR	rs11607976-C	NR	2E-6		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1113	chr11	69279110	69279111	rs11607976	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q13.3	MYEOV, LINC01488	rs11607976-T	0.3	4E-9		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
1113	chr11	69279110	69279111	rs11607976	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.3	MYEOV	rs11607976-C	0.698	7E-7		0.016	[0.0099-0.0229] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1113	chr11	69279110	69279111	rs11607976	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.3	MYEOV	rs11607976-C	0.695	1E-6	(EA, men)	0.022	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1113	chr11	69279110	69279111	rs11607976	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.3	MYEOV	rs11607976-C	0.694	8E-7	(EA)	0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1113	chr11	69279110	69279111	rs11607976	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.3	CCND1, MYEOV	rs11607976-T	0.3054	8E-6	(EA, men)	0.0242	[0.014-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1113	chr11	69279110	69279111	rs11607976	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.3	CCND1, MYEOV	rs11607976-T	0.3054	4E-8	(EA)	0.0215	[0.014-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1113	chr11	69280106	69280107	rs11323064	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.3	MYEOV, LINC01488	rs11323064-?	NR	6E-12		0.023434684	[0.017-0.03] unit decrease	Illumina [27896057] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q13.3		rs57212245-A	0.072471	9E-6		0.058524	[0.033-0.084] unit increase	Affymetrix [15580782] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs57212245-A	NR	2E-10		0.0353881	[0.025-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs57212245-A	NR	1E-10		0.0356838	[0.025-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs57212245-A	NR	4E-13		0.0404813	[0.03-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	AP000439.5	rs57212245-A	NR	1E-13		0.0415071	[0.031-0.052] unit decrease	Affymetrix [321169] (imputed)	N
1113	chr11	69280922	69280923	rs57212245	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs57212245-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69283302	69283303	rs631695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q13.3	NR	rs631695-T	0.417494	7E-17		0.0242925	[0.018-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1113	chr11	69283302	69283303	rs631695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.3	NR	rs631695-T	0.416477	7E-68		0.013996	[0.012-0.016] unit increase	Affymetrix [16582909] (imputed)	N
1113	chr11	69283302	69283303	rs631695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q13.3	NR	rs631695-T	0.417596	2E-61		0.0179332	[0.016-0.02] unit increase	Affymetrix [16582621] (imputed)	N
1113	chr11	69283302	69283303	rs631695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.3	NR	rs631695-T	0.416477	9E-46		0.0128823	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
1113	chr11	69283302	69283303	rs631695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q13.3	NR	rs631695-T	0.417596	9E-47		0.0168256	[0.014-0.019] unit increase	Affymetrix [16582614] (imputed)	N
1113	chr11	69283423	69283424	rs57506806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q13.3	NR	rs57506806-G	NR	2E-32		0.0351	[0.029-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr11	69283423	69283424	rs57506806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	11q13.3	NR	rs57506806-G	NR	7E-12		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1113	chr11	69284199	69284200	rs12804411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q13.3	NR	rs12804411-T	0.23123400000000005	3E-24		0.014036	[0.011-0.017] unit increase	Affymetrix [16585854] (imputed)	N
1113	chr11	69284199	69284200	rs12804411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q13.3	NR	rs12804411-T	0.23123400000000005	2E-21		0.0152938	[0.012-0.019] unit increase	Affymetrix [16585866] (imputed)	N
1113	chr11	69291284	69291285	rs12574166	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	11q13.3	NR	rs12574166-T	0.15	3E-8		0.28	[0.18-0.38] unit increase	Affymetrix [9231066] (imputed)	N
1113	chr11	69291284	69291285	rs12574166	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	11q13.3	NR	rs12574166-T	0.15	3E-8		0.28	[0.18-0.38] unit increase	Affymetrix [9231066] (imputed)	N
1113	chr11	69292196	69292197	rs11263458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.3		rs11263458-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1113	chr11	69299536	69299537	rs4980659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q13.3		rs4980659-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1113	chr11	69299536	69299537	rs4980659	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.3	CCND1	rs4980659-C	0.5228	1E-8		0.0329	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1113	chr11	69299536	69299537	rs4980659	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q13.3	CCND1	rs4980659-C	0.5124	4E-9	(European)	0.0372	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1113	chr11	69303726	69303727	rs10796820	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	LINC01488	rs10796820-T	0.529	3E-22		0.0184	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1113	chr11	69304875	69304876	rs661960	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.3	NR	rs661960-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69306578	69306579	rs4980661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q13.3	NR	rs4980661-A	0.527388	1E-11		0.014991316	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr11	69306578	69306579	rs4980661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q13.3		rs4980661-A	0.527355	4E-9		0.013083539	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr11	69306578	69306579	rs4980661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	intergenic	rs4980661-G	0.480078	9E-6	(males)	0.01323	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1113	chr11	69306578	69306579	rs4980661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	intergenic	rs4980661-G	0.480078	5E-12		0.0127	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1113	chr11	69306578	69306579	rs4980661	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	intergenic	rs4980661-G	0.480078	2E-7	(females)	0.01218	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1113	chr11	69307010	69307011	rs4980662	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.3	NR	rs4980662-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1113	chr11	69307396	69307397	rs12365303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q13.3		rs12365303-A	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1113	chr11	69307694	69307695	rs537626	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	11q13.3	CCND1	rs537626-?	0.18	2E-15		1.29	[1.21-1.37]	Illumina [1265548] (imputed)	N
1113	chr11	69324922	69324923	rs646993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.3	NR	rs646993-C	0.32824600000000004	3E-14		0.006575	[0.0048-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
1113	chr11	69324922	69324923	rs646993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.3	NR	rs646993-C	0.32824600000000004	1E-8		0.0056175	[0.0037-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1113	chr11	69328763	69328764	rs614367	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	11q13.3	CCND1	rs614367-?	0.16	1E-8		1.34	[NR]	Illumina [1265548] (imputed)	N
1113	chr11	69328763	69328764	rs614367	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q13.3	intergenic	rs614367-T	0.15	2E-63		1.21	[1.18-1.24]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1113	chr11	69328763	69328764	rs614367	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	11q13.3	FGF3, MYEOV, CCND1, ORAOV1, FGF19, FGF4	rs614367-T	0.15	3E-15		1.15	[1.10-1.20]	Illumina [582886]	N
1113	chr11	69329673	69329674	rs493786	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q13.3	CCND1	rs493786-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
1113	chr11	69330982	69330983	rs661204	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	11q13.3	NR	rs661204-?		9E-23		1.25	[NR]	NR [41502298] (imputed)	N
1113	chr11	69331417	69331418	rs78540526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	11q13.3		rs78540526-T	NR	1E-40		0.2991	[0.26-0.34] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1113	chr11	69331417	69331418	rs78540526	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	11q13.3	NR	rs78540526-T	NR	1E-11		1.61	1.4-1.85	Illumina [8074073] (imputed)	N
1113	chr11	69331417	69331418	rs78540526	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.3	NR	rs78540526-T	0.0756	2E-131	(EA)	0.2758	[0.25-0.3] unit increase	Illumina [~ 11800000] (imputed)	N
1113	chr11	69331417	69331418	rs78540526	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	11q13.3	NR	rs78540526-T	0.08	2E-62		1.34	[1.29-1.38]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1113	chr11	69331417	69331418	rs78540526	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11q13.3	NR	rs78540526-T	0.08	2E-86		1.34	[1.29-1.38]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1113	chr11	69331641	69331642	rs554219	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs554219-G	NR	4E-30		1.2180268	[1.18-1.26]	Affymetrix [7846216] (imputed)	N
1113	chr11	69331641	69331642	rs554219	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs554219-G	NR	1E-34		1.2226434	NR	Affymetrix [7846216] (imputed)	N
1113	chr11	69331641	69331642	rs554219	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	11q13.3	NR	rs554219-G	NR	3E-11		1.45	1.3-1.62	Illumina [8074073] (imputed)	N
1113	chr11	69331641	69331642	rs554219	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.3	CCND1	rs554219-G	0.13	6E-47	(EA)	1.21	[1.18-1.24] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1113	chr11	69331641	69331642	rs554219	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11q13.3	NR	rs554219-G	0.12	2E-81		1.26	[1.23-1.3]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1113	chr11	69332259	69332260	rs559664	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q13.3	NR	rs559664-G	0.330166	2E-9		0.019851	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1114	chr11	69343814	69343815	rs75296154	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	11q13.3		rs75296154-?	NR	7E-14		1.28229	[1.22-1.35]	NR [682398]	N
1114	chr11	69355076	69355077	rs872439	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs872439-T	NR	4E-8	(conditional)	0.067	[0.043-0.091] unit increase	Affymetrix [9869154] (imputed)	N
1114	chr11	69355081	69355082	rs872440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs872440-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1114	chr11	69355081	69355082	rs872440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs872440-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1114	chr11	69358816	69358817	rs12806763	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.3	CCND1	rs12806763-?	NR	4E-13		1.0631511	NR	Affymetrix [9154080] (imputed)	N
1114	chr11	69367117	69367118	rs498136	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	11q13.3	TPCN2, CCND1	rs498136-?	NR	1E-6				Affymetrix, Illumina [7850345] (imputed)	N
1114	chr11	69367117	69367118	rs498136	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	11q13.3	CCND1	rs498136-A	0.36	2E-12		1.12	[NR]	Illumina [at least 560000] (imputed)	N
1114	chr11	69367117	69367118	rs498136	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	11q13.3	CCND1	rs498136-A	0.32	2E-12		0.12	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1114	chr11	69373583	69373584	rs9651783	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11q13.3	CCND1	rs9651783-G	0.357792	4E-18				Affymetrix, Illumina [NR] (imputed)	N
1114	chr11	69379160	69379161	rs75915166	32785646	Maguire S	2020-08-12	J Natl Cancer Inst	Common susceptibility loci for male breast cancer.	Breast cancer (male)	1,380 European ancestry cases, 3,620 European ancestry controls	810 European ancestry cases, 1,026 European ancestry controls	11q13.3	NR	rs75915166-A	NR	8E-8		1.53	1.31-1.79	Illumina [8074073] (imputed)	N
1114	chr11	69379160	69379161	rs75915166	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11q13.3		rs75915166-A	NR	1E-96		1.3	[1.27-1.33]	Affymetrix, Illumina [NR] (imputed)	N
1114	chr11	69379160	69379161	rs75915166	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.3	CCND1	rs75915166-A	0.06	4E-95	(EA)	1.28	[1.24-1.33] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1114	chr11	69379160	69379161	rs75915166	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11q13.3	NR	rs75915166-A	0.06	1E-57		1.31	[1.26-1.36]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1114	chr11	69380897	69380898	rs4354713	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	11q13.3	CCND1	rs4354713-A	0.3557	9E-21		1.0969	NR	Affymetrix, Illumina [NR] (imputed)	N
1114	chr11	69387454	69387455	rs638640	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q13.3	ORAOV1	rs638640-C	0.34	6E-10		1.078	NR	Affymetrix [9154080] (imputed)	N
1114	chr11	69391961	69391962	rs145355401	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	11q13.3	LINC01488, CCND1	rs145355401-C	0.019	7E-6		2.48	[1.67-3.68]	Affymetrix [up to 27494467] (imputed)	N
1114	chr11	69442962	69442963	rs1982774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.3	NR	rs1982774-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1114	chr11	69442962	69442963	rs1982774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.3		rs1982774-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1114	chr11	69445172	69445173	rs592483	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.3	NA	rs592483-T	0.5933	2E-16		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1114	chr11	69445172	69445173	rs592483	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q13.3	NA	rs592483-T	0.5933	2E-16		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1114	chr11	69446912	69446913	rs11827026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	CCND1	rs11827026-A	NR	1E-9		0.0450659	[0.03-0.06] unit increase	Affymetrix [321016] (imputed)	N
1114	chr11	69448372	69448373	rs654240	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds	3,321 European ancestry cases, 42 Chinese ancestry cases, 75 Malay ancestry cases, 118 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	11q13.3	CCND1	rs654240-T	0.41	7E-7		1.17	NR	Affymetrix, Illumina [NR] (imputed)	N
1114	chr11	69448757	69448758	rs11820019	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11q13.3	CCND1	rs11820019-T	0.98	1E-6		1.2345679	[1.14-1.35]	Illumina [12557761] (imputed)	N
1114	chr11	69448757	69448758	rs11820019	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q13.3	CCND1	rs11820019-T	0.9733	5E-12		1.16	[1.11-1.20]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1114	chr11	69448911	69448912	rs74606104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q13.3		rs74606104-A	NR	5E-14		0.0516	[0.038-0.065] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1114	chr11	69449075	69449076	rs667515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11q13.3	CCND1	rs667515-C	NR	5E-8		0.0175848	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1114	chr11	69449075	69449076	rs667515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11q13.3	CCND1	rs667515-C	NR	3E-8		0.0178489	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
1114	chr11	69449075	69449076	rs667515	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q13.3	CCND1	rs667515-G	0.613852	8E-10		0.00867297	[0.0059-0.0114] unit increase	Affymetrix [12370749]	N
1114	chr11	69449075	69449076	rs667515	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs667515-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1114	chr11	69449075	69449076	rs667515	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11q13.3	CCND1	rs667515-G	0.612851	7E-7		0.015747	[0.0095-0.022] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1114	chr11	69449075	69449076	rs667515	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q13.3	CCND1	rs667515-G	0.617803	9E-12		0.01845	[0.013-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1114	chr11	69453043	69453044	rs144245804	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.3	NR	rs144245804-G	0.9731	1E-17		0.1304	[0.1-0.16] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1114	chr11	69453934	69453935	rs1944129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.3		rs1944129-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1114	chr11	69453984	69453985	rs36225067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q13.3		rs36225067-C	NR	8E-13		0.046	[0.033-0.059] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1114	chr11	69453984	69453985	rs36225067	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q13.3	NR	rs36225067-C	0.02615	9E-15		0.005728	[0.0043-0.0071] unit increase	Affymetrix [NR] (imputed)	N
1114	chr11	69455999	69456000	rs55911137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q13.3		rs55911137-C	0.014837357	3E-9		0.24181886	[0.16-0.32] unit decrease	Illumina [13429769] (imputed)	N
1114	chr11	69455999	69456000	rs55911137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q13.3		rs55911137-C	NR	5E-13		0.1893	[0.14-0.24] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1114	chr11	69455999	69456000	rs55911137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11q13.3		rs55911137-C	NR	3E-9		0.1693	[0.11-0.22] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1114	chr11	69456900	69456901	rs3017621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	CCND1	rs3017621-G	NR	3E-8		0.0272243	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
1114	chr11	69456900	69456901	rs3017621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	CCND1	rs3017621-G	NR	2E-8		0.0277992	[0.018-0.037] unit increase	Affymetrix [319769] (imputed)	N
1114	chr11	69456900	69456901	rs3017621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs3017621-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1114	chr11	69456900	69456901	rs3017621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.3		rs3017621-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1114	chr11	69457292	69457293	rs1352075	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		11q13.3	NR	rs1352075-A	0.44	2E-6	(HD vs. non-HD)	1.42	[1.23-1.64]	Illumina [414804]	N
1114	chr11	69457546	69457547	rs3918292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs3918292-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1114	chr11	69458429	69458430	rs55816909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.3	CCND1	rs55816909-C	NR	7E-15		0.0692796	[0.052-0.087] unit increase	Affymetrix [321016] (imputed)	N
1114	chr11	69458429	69458430	rs55816909	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11q13.3		rs55816909-C	0.018652235	4E-10		0.80245423	[0.74886186-0.859881976]	Illumina [8919992] (imputed)	N
1114	chr11	69461685	69461686	rs34507830	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	11q13.3		rs34507830-?	NR	2E-7		1.26234	[1.17-1.35]	NR [682398]	N
1114	chr11	69461685	69461686	rs34507830	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs34507830-T	NR	3E-8		1.2291052	NR	Affymetrix [7846216] (imputed)	N
1114	chr11	69461685	69461686	rs34507830	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q13.3	NR	rs34507830-T	0.0206	7E-31	(EA)	0.2629	[0.22-0.31] unit increase	Illumina [~ 11800000] (imputed)	N
1114	chr11	69462641	69462642	rs602652	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11q13.3	CCND1	rs602652-A	0.809	5E-9		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1114	chr11	69462855	69462856	rs3862792	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q13.3		rs3862792-T	NR	7E-8		1.2515644	[1.15-1.36]	Affymetrix [7846216] (imputed)	N
1114	chr11	69462909	69462910	rs9344	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (serum Ig light chain only lambda/kappa based profile)	535 cases, controls	NA	11q13.3	NR	rs9344-G	NR	2E-12		1.62	[1.42-1.85]	NR [NR]	N
1114	chr11	69462909	69462910	rs9344	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (serum Ig light chain only lambda based profile)	404 cases, controls	NA	11q13.3	NR	rs9344-G	NR	1E-11		1.7	[1.46-1.98]	NR [NR]	N
1114	chr11	69462909	69462910	rs9344	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (serum Ig lambda profile)	345 cases, controls	NA	11q13.3	NR	rs9344-G	NR	9E-11		1.4	[1.27-1.55]	NR [NR]	N
1114	chr11	69462909	69462910	rs9344	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (kidney involvement)	844 cases, controls	NA	11q13.3	NR	rs9344-G	NR	7E-8		1.34	[1.20-1.48]	NR [NR]	N
1114	chr11	69462909	69462910	rs9344	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (heart involvement)	835 cases, controls	NA	11q13.3	NR	rs9344-G	NR	3E-9		1.39	[1.24-1.54]	NR [NR]	N
1114	chr11	69462909	69462910	rs9344	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	11q13.3	CCND1	rs9344-G	0.56	8E-11		1.35	[1.23-1.48]	Affymetrix, Illumina [NR] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	11q13.3	CCND1	rs3918298-A	NR	1E-9		0.0561306	[0.038-0.074] unit increase	Affymetrix [321788] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q13.3	NR	rs3918298-A	NR	2E-11		0.0467	[0.033-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	11q13.3	NR	rs3918298-A	0.026780405	8E-7		1.2702144	[1.16-1.40]	Affymetrix, Illumina [20400945] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.3	NR	rs3918298-A	NR	1E-18		1.135	[1.10-1.17]	Affymetrix, Illumina [29235255] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	2,714 Hispanic cases, 5,239 Hispanic controls	NA	11q13.3	NR	rs3918298-A	0.041	1E-6		1.377	[1.21-1.57]	Affymetrix, Illumina [11334207] (imputed)	N
1114	chr11	69463272	69463273	rs3918298	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.3	NR	rs3918298-G	0.8823	8E-25		0.1038	[0.084-0.124] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1114	chr11	69463678	69463679	rs3212880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs3212880-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1114	chr11	69465506	69465507	rs3212891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q13.3	CCND1	rs3212891-A	0.549323	9E-10		0.01365887	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr11	69471192	69471193	rs72938078	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.3	NR	rs72938078-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1115	chr11	69472461	69472462	rs113873420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q13.3	NR	rs113873420-G	NR	2E-11		0.0633	[0.045-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1115	chr11	69476278	69476279	rs1192925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.3	NR	rs1192925-T	0.631455	4E-11		0.012694	[0.0089-0.0165] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1115	chr11	69476278	69476279	rs1192925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs1192925-T	0.655771	2E-18				Affymetrix, Illumina [23467995] (imputed)	N
1115	chr11	69482090	69482091	rs1789166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	CCND1, ORAOV1	rs1789166-C	0.348263	5E-9	(females)	0.0142	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1115	chr11	69482090	69482091	rs1789166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	CCND1, ORAOV1	rs1789166-C	0.348263	5E-12		0.01281	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1115	chr11	69482090	69482091	rs1789166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q13.3	CCND1, ORAOV1	rs1789166-C	0.348263	4E-6	(males)	0.01115	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1115	chr11	69486243	69486244	rs1789167	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	LTO1	rs1789167-A	0.3467	4E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1115	chr11	69490345	69490346	rs10796828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q13.3	NR	rs10796828-G	0.63536	1E-17		0.016449	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1115	chr11	69490345	69490346	rs10796828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q13.3	NR	rs10796828-G	0.635012	4E-12		0.013851	[0.0099-0.0178] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1115	chr11	69490345	69490346	rs10796828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q13.3	NR	rs10796828-G	0.635004	3E-20		0.017973	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1115	chr11	69490345	69490346	rs10796828	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q13.3	ORAOV1	rs10796828-T	0.365603	7E-15		0.0113389	[0.0085-0.0142] unit decrease	Affymetrix [12370749]	N
1115	chr11	69497244	69497244	rs11386923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q13.3		rs11386923-CA	NR	2E-10		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1115	chr11	69497244	69497244	rs11386923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.3		rs11386923-C	0.352434	1E-14		0.018120686	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr11	69497268	69497269	rs80208956	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11q13.3	ORAOV1	rs80208956-A	NR	6E-6		0.3	[0.16-0.44] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1115	chr11	69499785	69499786	rs6606652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs6606652-T	0.67551	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
1115	chr11	69499785	69499786	rs6606652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs6606652-T	0.656565	7E-11				Affymetrix, Illumina [23114412] (imputed)	N
1115	chr11	69500362	69500363	rs4441044	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.3	NR	rs4441044-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1115	chr11	69501008	69501009	rs58439903	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.3		rs58439903-C	0.34	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
1115	chr11	69501008	69501009	rs58439903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11q13.3	ORAOV1	rs58439903-C	NR	4E-8		0.0178424	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1115	chr11	69501008	69501009	rs58439903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11q13.3	ORAOV1	rs58439903-C	NR	4E-8		0.0178885	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
1115	chr11	69502760	69502761	rs1192922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs1192922-A	0.674343	5E-10				Affymetrix, Illumina [24588908] (imputed)	N
1115	chr11	69515695	69515696	rs79825511	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	11q13.3	NR	rs79825511-?	NR	5E-6		1.5068	[0.92-2.09] unit decrease	Affymetrix [7154205] (imputed)	N
1115	chr11	69518448	69518449	rs912723093	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	11q13.3		rs912723093-?	NR	2E-9		0.93636	[0.64-1.23] unit decrease	NR [9800000] (imputed)	N
1115	chr11	69521632	69521633	rs187968503	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	11q13.3	FGF19	rs187968503-?	NR	2E-8		0.218	[0.14-0.29] unit decrease	Illumina [34656550] (imputed)	N
1115	chr11	69521632	69521633	rs187968503	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	11q13.3	FGF19	rs187968503-?	NR	1E-6	(AA)	0.210922	[0.13-0.3] unit decrease	Illumina [34656550] (imputed)	N
1115	chr11	69524592	69524593	rs118067673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q13.3		rs118067673-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1115	chr11	69580009	69580010	rs112009437	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	11q13.3	AP001888.1	rs112009437-A	NR	8E-6			[NR]	Illumina [NR] (imputed)	N
1115	chr11	69586226	69586227	rs182197129	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime nap	113,054 European ancestry cases and controls	NA	11q13.3	NR	rs182197129-T	0.0023	7E-10		0.3	[0.21-0.39] unit increase	Affymetrix [at least 12428592] (imputed)	N
1115	chr11	69590168	69590169	rs138567562	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q13.3	FGF4	rs138567562-T	0.0134012753743226	5E-6	(G_Ruminococcus_HB)	1.39226	[0.8-1.99] unit decrease	Illumina [7711310] (imputed)	N
1115	chr11	69596522	69596523	rs4084127	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	11q13.3	NR	rs4084127-?	NR	3E-6		1.11	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
1116	chr11	69600536	69600537	rs12808519	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q13.3	FGF4, FGF3	rs12808519-T	0.08	8E-7	(women)	0.182	[0.11-0.25] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1116	chr11	69602411	69602412	rs10796849	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q13.3	NR	rs10796849-C	0.111934	6E-6	(IGP73)	0.6132	[0.35-0.88] unit decrease	Illumina [~ 2500000] (imputed)	N
1116	chr11	69602411	69602412	rs10796849	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q13.3	NR	rs10796849-C	0.111934	6E-6	(IGP52)	0.6111	[0.35-0.88] unit decrease	Illumina [~ 2500000] (imputed)	N
1116	chr11	69624481	69624482	rs734102	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (persistent)	141 Mexican American persistent carrier individuals, 620 Mexican American non-carrier individuals	NA	11q13.3	FGF3G, FGF4G	rs734102-C	0.92	3E-6		3.68	[2.13-6.35]	Affymetrix, Illumina [at least 603042] (imputed)	N
1116	chr11	69641228	69641229	rs6598099	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	11q13.3	NR	rs6598099-?	NR	6E-6		0.0491	[0.028-0.07] unit decrease	Illumina [at least 560000] (imputed)	N
1116	chr11	69660434	69660435	rs575653457	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	11q13.3	FGF3	rs575653457-A	0.0014	6E-6		1.2167	[0.69-1.74] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1116	chr11	69661333	69661334	rs11263613	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	11q13.3	CCND1, FGF19, ORAOV1, FGF3, FGF4, TCONS_00019371	rs11263613-G	0.12	4E-17		1.68	[1.49-1.89]	Illumina [792342]	N
1116	chr11	69683380	69683380	rs10626466	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	11q13.3	FGF3, ANO1	rs10626466-?	NR	5E-12		0.026	[0.019-0.033] unit increase	Illumina [12039491] (imputed)	N
1116	chr11	69689680	69689681	rs150876292	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	11q13.3	FGF3, LOC101928443	rs150876292-?	NR	4E-8		0.0619	[0.04-0.084] unit decrease novel	Illumina [6108953] (imputed)	N
1116	chr11	69705479	69705480	rs28600876	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	11q13.3	FGF3	rs28600876-C	NR	7E-7	(females)	0.134	[0.081-0.187] unit increase	Illumina [7531543] (imputed)	N
1117	chr11	69791512	69791513	rs28532161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs28532161-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1117	chr11	69791951	69791952	rs61885091	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q13.3	ANO1, FGF4	rs61885091-A	0.168762	5E-10		0.022879	[0.016-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1117	chr11	69811697	69811698	rs113539282	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.3	NR	rs113539282-T	0.01045	1E-8	(DPP7)	0.2031	NR unit increase	Illumina [1671387] (imputed)	N
1117	chr11	69817270	69817271	rs58195912	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q13.3	intergenic	rs58195912-C	NR	6E-7	(AA)			Illumina [up to 11995908] (imputed)	N
1117	chr11	69819138	69819139	rs111412755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.3		rs111412755-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1117	chr11	69819637	69819638	rs55646508	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	11q13.3		rs55646508-C	0.911839	5E-18		0.0995205	[0.075-0.124] decrease	Affymetrix [NR]	N
1117	chr11	69825413	69825414	rs72931748	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	11q13.3		rs72931748-A	0.912281	2E-16		0.103543	[0.078-0.129] decrease	Affymetrix [NR]	N
1117	chr11	69825413	69825414	rs72931748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q13.3		rs72931748-G	NR	3E-9		0.0222	[0.015-0.029] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1117	chr11	69825413	69825414	rs72931748	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q13.3	ANO1	rs72931748-A	0.901	7E-11		0.2997	[0.21-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
1117	chr11	69829716	69829717	rs72931768	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11q13.3	FGF3, ANO1	rs72931768-G	0.88	3E-9		1.09	[1.07-1.1]	Illumina [at least 560000] (imputed)	N
1117	chr11	69829716	69829717	rs72931768	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11q13.3	FGF3, ANO1	rs72931768-?	NR	3E-9		1.086	[1.057-1.116]	Illumina [13754664] (imputed)	N
1117	chr11	69833579	69833580	rs72931779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	11q13.3		rs72931779-G	0.116715082	3E-8		0.13468587	[0.087-0.182] unit increase	Illumina [13429768] (imputed)	N
1117	chr11	69834472	69834473	rs56363382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	11q13.3		rs56363382-T	NR	2E-15		0.1141	[0.086-0.142] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1118	chr11	69865195	69865196	rs182624399	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11q13.3	RP11-626H12.2	rs182624399-T	0.0113	2E-7		0.169	[0.11-0.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chr11	69916745	69916746	rs7949333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.3	NR	rs7949333-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1118	chr11	69919213	69919214	rs4411303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs4411303-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1118	chr11	69924351	69924352	rs11233117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q13.3	ANO1	rs11233117-G	NR	8E-10		0.0174126	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1118	chr11	69924351	69924352	rs11233117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q13.3	ANO1	rs11233117-G	NR	8E-10		0.0174289	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1118	chr11	69924351	69924352	rs11233117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.3	ANO1	rs11233117-G	NR	3E-9		0.0170327	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1118	chr11	69924351	69924352	rs11233117	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	ANO1	rs11233117-C	0.5465	5E-23		0.0191	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1118	chr11	69941408	69941409	rs3889875	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11q13.3	NR	rs3889875-?	NR	6E-6		0.0608	[0.035-0.087] unit increase	Illumina [at least 560000] (imputed)	N
1118	chr11	69979046	69979046	rs35784902	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	ANO1	rs35784902-A	0.784	1E-14		0.0181	[0.014-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1118	chr11	69981590	69981591	rs7947793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q13.3		rs7947793-A	NR	5E-10		0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1118	chr11	69982095	69982096	rs7939912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.3	RP11-805J14.3, ANO1	rs7939912-A	0.605021	9E-11		0.014747305	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr11	69982095	69982096	rs7939912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.3	RP11-805J14.3, ANO1	rs7939912-A	0.604998	5E-13		0.016461702	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr11	69982095	69982096	rs7939912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.3	NR	rs7939912-A	0.596707	8E-13				Affymetrix, Illumina [19872809] (imputed)	N
1118	chr11	69982095	69982096	rs7939912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q13.3	NR	rs7939912-A	0.60492	7E-14		0.01529	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1118	chr11	69982095	69982096	rs7939912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.3		rs7939912-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1119	chr11	69999251	69999252	rs3781663	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	11q13.3	ANO1	rs3781663-?		8E-6	(disease-free survival)	2.24	[1.57-3.19]	Illumina [729737]	N
1119	chr11	70005373	70005374	rs875107	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11q13.3	FADD	rs875107-A	0.517213131289737	2E-9		0.0032043	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1119	chr11	70005640	70005641	rs875106	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q13.3	ANO1	rs875106-A	0.5229	8E-16		0.1217	[0.092-0.151] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1119	chr11	70007310	70007311	rs2276066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q13.3	ANO1	rs2276066-G	0.647386	6E-9		0.013533849	[0.009-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1119	chr11	70007310	70007311	rs2276066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q13.3	NR	rs2276066-G	0.648326	9E-11		0.013903	[0.0097-0.0181] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1119	chr11	70007769	70007770	rs2186797	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11q13.3	ANO1	rs2186797-?	0.06420000000000003	4E-8		0.96	[0.94-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
1119	chr11	70009719	70009720	rs11235460	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	11q13.3		rs11235460-G	0.59711	6E-11		0.0477193	[0.034-0.062] increase	Affymetrix [NR]	N
1119	chr11	70013185	70013186	rs3781654	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	11q13.3		rs3781654-G	0.618734	2E-11		0.0517257	[0.037-0.067] increase	Affymetrix [NR]	N
1119	chr11	70020767	70020768	rs1876	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	ANO1	rs1876-T	0.8892	7E-21		0.0286	[0.023-0.034] unit increase	Affymetrix [18391927] (imputed)	N
1119	chr11	70020767	70020768	rs1876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.3		rs1876-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1119	chr11	70027912	70027913	rs7127129	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	11q13.3	TMEM16A	rs7127129-G	0.41	2E-9		0.015	[0.0091-0.0209] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1119	chr11	70044450	70044451	rs78460763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.3		rs78460763-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1119	chr11	70045335	70045336	rs11604809	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q13.3	NR	rs11604809-?	NR	7E-6		4.505	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1119	chr11	70057584	70057585	rs77988765	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	Intergenic	rs77988765-G	0.973	4E-6	(AA)	0.047	unit increase	Illumina [NR] (imputed)	N
1119	chr11	70058418	70058419	rs78972067	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q13.3	NR	rs78972067-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
1119	chr11	70088298	70088299	rs150267141	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	Intergenic	rs150267141-T	0.992	3E-6	(AA)	0.134	unit increase	Illumina [NR] (imputed)	N
1119	chr11	70090705	70090706	rs118084537	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	Intergenic	rs118084537-T	0.989	6E-8	(AA)	0.124	unit increase	Illumina [NR] (imputed)	N
1119	chr11	70093571	70093572	rs72945112	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11q13.3	FADD	rs72945112-T	0.147931327188795	6E-6		0.0034137	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1119	chr11	70105628	70105629	rs546733646	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.3	intergenic	rs546733646-A	0.9934	1E-9		0.0697	[0.047-0.092] unit decrease	Affymetrix [18391927] (imputed)	N
1119	chr11	70113368	70113369	rs658590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q13.3		rs658590-A	0.34	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1119	chr11	70113368	70113369	rs658590	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q13.3	NR	rs658590-A	0.3492	4E-9				NR [9056863] (imputed)	N
1119	chr11	70113900	70113901	rs72945132	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q13.3	PPFIA1	rs72945132-C	0.12	2E-6		0.047	[0.027-0.067] unit decrease	Affymetrix [7947838] (imputed)	N
1120	chr11	70140741	70140742	rs546724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q13.3	NR	rs546724-G	0.350857	4E-12		0.014186	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1120	chr11	70141689	70141690	rs113180277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q13.3	AP000487.6, PPFIA1	rs113180277-C	0.349906	5E-11		0.015285353	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr11	70222985	70222986	rs665890	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.3		rs665890-T	0.35	7E-9		5.78	z score increase	Affymetrix [9061022] (imputed)	N
1120	chr11	70253388	70253389	rs2298396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.3		rs2298396-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1121	chr11	70308895	70308896	rs535577177	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	11q13.3		rs535577177-A	0.008	1E-8		4.72	[3.11-6.33] unit decrease	Illumina [94681438]	N
1121	chr11	70311044	70311045	rs180910263	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	Intergenic	rs180910263-G	1.0	1E-6	(AA)	0.625	unit increase	Illumina [NR] (imputed)	N
1121	chr11	70311044	70311045	rs180910263	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	Intergenic	rs180910263-G	1.0	9E-7	(AA)	3.166	NR unit increase	Illumina [NR] (imputed)	N
1121	chr11	70320422	70320423	rs143737902	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	AK128563	rs143737902-G	1.0	2E-6	(AA)	0.617	unit increase	Illumina [NR] (imputed)	N
1121	chr11	70320422	70320423	rs143737902	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	AK128563	rs143737902-G	1.0	1E-6	(AA)	3.126	NR unit increase	Illumina [NR] (imputed)	N
1121	chr11	70326592	70326593	rs117767473	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	BC127192	rs117767473-A	0.999	3E-6	(AA)	0.474	unit increase	Illumina [NR] (imputed)	N
1121	chr11	70326592	70326593	rs117767473	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	BC127192	rs117767473-A	0.999	2E-8	(AA)	2.856	NR unit increase	Illumina [NR] (imputed)	N
1121	chr11	70345608	70345609	rs144903619	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	BC127192	rs144903619-T	1.0	2E-6	(AA)	0.621	unit increase	Illumina [NR] (imputed)	N
1121	chr11	70345608	70345609	rs144903619	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.3	BC127192	rs144903619-T	1.0	2E-6	(AA)	3.123	NR unit increase	Illumina [NR] (imputed)	N
1122	chr11	70417180	70417181	rs12281359	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	11q13.4	SHANK2	rs12281359-C	0.03	9E-6		0.247	[0.14-0.36] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1122	chr11	70506205	70506206	rs525304	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	11q13.4	SHANK2	rs525304-?	NR	3E-6	(Response)	0.04	[0.024-0.056] ng/dL increase	Affymetrix [2543887] (imputed)	N
1123	chr11	70517926	70517927	rs12575685	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q13.4	SHANK2	rs12575685-G	0.673	1E-10		0.93688	[0.92-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1123	chr11	70517926	70517927	rs12575685	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	11q13.4	NR	rs12575685-G	0.669	5E-11		0.921	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1123	chr11	70517926	70517927	rs12575685	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q13.4	SHANK2, SHANK2-AS1	rs12575685-A	0.314	8E-9		1.07272	[1.05-1.1]	NR [9372253] (imputed)	N
1123	chr11	70520188	70520189	rs61886405	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	11q13.4		rs61886405-C	NR	5E-6		4.5463295	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1123	chr11	70528849	70528850	rs182139615	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	11q13.4	SHANK2	rs182139615-T	0.0011	1E-9		6.62	[3.59-12.19]	Illumina [11310926] (imputed)	N
1123	chr11	70544936	70544937	rs7117514	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q13.4	NR	rs7117514-G	0.4583	4E-14		1.0162601	[1.01-1.02]	NR [8098588] (imputed)	N
1123	chr11	70644838	70644839	rs11237534	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	11q13.4	NR	rs11237534-?	NR	1E-5				NR [18617478] (imputed)	N
1124	chr11	70659704	70659705	rs553341619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	11q13.4		rs553341619-C	NR	5E-8		73.0488	[46.87-99.23] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1124	chr11	70659704	70659705	rs553341619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	11q13.4		rs553341619-C	2.62837E-4	5E-8		73.04878	[46.87-99.23] unit increase	Illumina [13429980] (imputed)	N
1124	chr11	70665520	70665521	rs3017493	23432519	O'Brien RP	2013-02-21	Clin Transplant	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		11q13.4	NR	rs3017493-G	NR	5E-6	(Five-year creatinine)	0.2563	[NR] unit increase	Illumina [511662]	N
1124	chr11	70666220	70666221	rs184457411	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q13.4	SHANK2	rs184457411-A	0.003	8E-6	(liability model)	0.92	[0.51-1.33] unit increase	NR [19725427] (imputed)	N
1125	chr11	70840328	70840329	rs72957667	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11q13.4	SHANK2	rs72957667-A	0.9941	2E-6		0.3789	[0.22-0.53] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1125	chr11	70845203	70845204	rs35198051	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.4	SHANK2	rs35198051-A	0.262	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1125	chr11	70858236	70858237	rs201642016	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	11q13.4	SHANK2	rs201642016-T	0.324	4E-11		0.0124		Illumina [243345]	N
1125	chr11	70891160	70891161	rs7124405	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	11q13.4	SHANK2	rs7124405-T	0.3713	6E-7		1.905	1.473-2.463	Illumina [164395]	N
1125	chr11	70894353	70894354	rs150728661	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q13.4	SHANK2	rs150728661-A	0.0322680222237834	3E-6	(G_unclassified_P_Firmicutes_HB)	0.835367	[0.49-1.19] unit decrease	Illumina [7711310] (imputed)	N
1126	chr11	70971148	70971149	rs78168201	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.4		rs78168201-C	0.986234	1E-26		0.091	[0.073-0.109] unit increase	NR [7250403] (imputed)	N
1127	chr11	71044743	71044744	rs1660830	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q13.4	NR	rs1660830-?	NR	1E-10				Affymetrix [NR]	N
1127	chr11	71063988	71063989	rs71473824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs71473824-T	NR	4E-16		0.0552	[0.042-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr11	71069254	71069255	rs75794081	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	11q13.4	AP002387.1	rs75794081-?	NR	5E-6				Affymetrix, Illumina [15642250] (imputed)	N
1127	chr11	71081059	71081060	rs1792308	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs1792308-T	NR	2E-24		0.0287	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr11	71089209	71089210	rs1620013	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.4		rs1620013-?	NR	2E-12		0.0154604	[0.011-0.02] unit increase	NR [6912294] (imputed)	N
1127	chr11	71094231	71094232	rs1660839	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.4		rs1660839-G	0.751151	1E-38		0.03	[0.026-0.034] unit increase	NR [7250403] (imputed)	N
1127	chr11	71094551	71094552	rs75393964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs75393964-G	NR	6E-14		0.0366	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr11	71113303	71113304	rs1792325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs1792325-T	NR	9E-31		0.0287	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr11	71117462	71117463	rs7125171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs7125171-C	NR	2E-19		0.0535	[0.042-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr11	71123841	71123842	rs80165586	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs80165586-T	NR	4E-36		0.0901	[0.076-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr11	71130342	71130343	rs1894100	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.4		rs1894100-?	NR	1E-300		0.102148	[0.097-0.107] unit decrease	NR [6912294] (imputed)	N
1127	chr11	71132867	71132868	rs12803256	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.4		rs12803256-A	0.223268	1E-300		0.105	[0.1-0.11] unit decrease	NR [7250403] (imputed)	N
1127	chr11	71132867	71132868	rs12803256	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.4	NR	rs12803256-G	0.770616	9E-407		0.100325	[0.096-0.105] unit increase	Affymetrix [16668957] (imputed)	N
1127	chr11	71133132	71133133	rs185378533	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11q13.4	intergenic	rs185378533-G	0.461	2E-9		0.07	[0.05-0.09] nmol/L increase	Affymetrix, Illumina [11026511] (imputed)	N
1127	chr11	71135150	71135151	rs536006581	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.4	NR	rs536006581-G	0.008644	9E-35		0.17381	[0.15-0.2] unit decrease	Affymetrix [16668957] (imputed)	N
1127	chr11	71144426	71144427	rs574615332	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.4	NR	rs574615332-A	0.99727	1E-28		0.286655	[0.24-0.34] unit decrease	Affymetrix [16668957] (imputed)	N
1127	chr11	71150030	71150031	rs80338857	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	11q13.4	DHCR7	rs80338857-?	NR	4E-29		2.70494	[2.23-3.18] unit decrease	Affymetrix [up to 386296] (imputed)	N
1127	chr11	71162857	71162858	rs72954301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs72954301-T	NR	6E-16		0.0332	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1127	chr11	71166336	71166337	rs1790373	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.4		rs1790373-?	NR	4E-84		0.101924	[0.092-0.112] unit decrease	NR [6912294] (imputed)	N
1127	chr11	71167448	71167449	rs12785878	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	11q13.4	NADSYN1, DHCR7	rs12785878-T	NR	4E-62		0.036	[0.032-0.04] unit increase	Affymetrix, Illumina [up to 3600000] (imputed)	N
1127	chr11	71167448	71167449	rs12785878	20541252	Wang TJ	2010-06-09	Lancet	Common genetic determinants of vitamin D insufficiency: a genome-wide association study.	Vitamin D insufficiency	16,125 European ancestry individuals	17,871 European ancestry individuals	11q13.4	NADSYN1, DHCR7	rs12785878-?	0.23	2E-27				Affymetrix, Illumina [up to 2548976] (imputed)	N
1127	chr11	71168072	71168073	rs4944958	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	11q13.4		rs4944958-A	0.203	9E-143		0.259	[0.24-0.28] unit increase	Affymetrix [812428]	N
1127	chr11	71170042	71170043	rs7938885	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	11q13.4	DHCR7	rs7938885-C	0.63	5E-16		8.125	(z-score) decrease	Affymetrix, Illumina [at least 398246] (imputed)	N
1127	chr11	71171002	71171003	rs12800438	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	11q13.4	DHCR7/NADSYN1	rs12800438-A	NR	1E-16	(AA + Hispanic)		increase	Affymetrix, Illumina [at least 398246] (imputed)	N
1128	chr11	71173253	71173254	rs4423214	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	11q13.4	intergenic	rs4423214-T	0.697	1E-40		0.1	[0.08-0.12] nmol/L increase	Affymetrix, Illumina [11026511] (imputed)	N
1128	chr11	71182184	71182185	rs12278461	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	11q13.4		rs12278461-C	0.21	5E-228		0.1294	[0.12-0.14] unit decrease	NR [8806780] (imputed)	N
1128	chr11	71182184	71182185	rs12278461	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	11q13.4		rs12278461-C	0.21	2E-144		0.1064	[0.098-0.115] unit decrease	NR [8806780] (imputed)	N
1128	chr11	71182184	71182185	rs12278461	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	11q13.4		rs12278461-C	0.21	1E-28		0.0339	[0.028-0.04] unit decrease	NR [6098063] (imputed)	N
1128	chr11	71187293	71187294	rs4944062	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels (dietary vitamin D intake interaction)	39,868 European ancestry individuals	2,113 European ancestry individuals	11q13.4	NADSYN1, DHCR7	rs4944062-T	NR	2E-31				Affymetrix, Illumina [at least 1200000] (imputed)	N
1128	chr11	71187678	71187679	rs3794060	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	11q13.4	DHCR7, NADSYN1	rs3794060-C		1E-20		1.23	[1.18-1.29]	Illumina [644674]	N
1128	chr11	71194558	71194559	rs3829251	20418485	Ahn J	2010-04-23	Hum Mol Genet	Genome-wide association study of circulating vitamin D levels.	Vitamin D levels	4,501 European ancestry individuals	2,221 European ancestry individuals	11q13.4	NADSYN1, DHCR7	rs3829251-A	0.19	3E-9		0.18	[0.12-0.24] unit decrease	Affymetrix, Illumina [593253] (imputed)	N
1128	chr11	71201526	71201527	rs10898201	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	11q13.4	NR	rs10898201-A		5E-6		1.31	[1.17-1.48]	Illumina [109812]	N
1128	chr11	71209952	71209953	rs12286616	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs12286616-T	NR	3E-26		0.0581	[0.047-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr11	71210069	71210070	rs11233933	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.4		rs11233933-?	NR	1E-300		0.115785	[0.11-0.12] unit decrease	NR [6912294] (imputed)	N
1128	chr11	71220981	71220982	rs118104761	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs118104761-C	NR	6E-17		0.0946	[0.072-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr11	71222407	71222408	rs549940584	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.4	NR	rs549940584-T	0.013335	2E-72		0.182748	[0.16-0.2] unit increase	Affymetrix [16668957] (imputed)	N
1128	chr11	71228989	71228990	rs200454003	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.4	NR	rs200454003-T	0.264587	4E-256		0.0867	[0.082-0.092] unit decrease	Affymetrix [16668957] (imputed)	N
1128	chr11	71231045	71231046	rs143925724	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	11q13.4	NR	rs143925724-?	NR	8E-6		1.10177	[0.62-1.59] unit increase	NR [13958389] (imputed)	N
1128	chr11	71234106	71234107	rs11234027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.4	NR	rs11234027-A	NR	5E-192		0.105	[0.098-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr11	71241958	71241959	rs116084861	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs116084861-G	0.0122	2E-9	(LGMN)	0.00661	NR unit increase	Illumina [1671387] (imputed)	N
1128	chr11	71241958	71241959	rs116084861	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs116084861-G	0.0122	2E-11	(CTSL)	0.03175	NR unit increase	Illumina [1671387] (imputed)	N
1128	chr11	71260720	71260721	rs11234128	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs11234128-T	0.02613	1E-8	(LAMP2)	0.009777	NR unit increase	Illumina [1671387] (imputed)	N
1128	chr11	71265700	71265701	rs72958391	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	11q13.4		rs72958391-C	NR	4E-6		0.1141	[0.066-0.162] unit decrease	NR [4841651] (imputed)	N
1128	chr11	71287954	71287955	rs79143696	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar II disorder	3,421 European ancestry cases, 31,358 European ancestry controls	NA	11q13.4	NR	rs79143696-C	0.0212	9E-8		1.66496	[NR]	NR [9372253] (imputed)	N
1128	chr11	71290602	71290603	rs116567102	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	11q13.4		rs116567102-?	NR	6E-6		0.22	[0.12-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1129	chr11	71422375	71422376	rs201248458	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs201248458-A	0.01394	2E-8	(FDXR)	0.03596	NR unit increase	Illumina [1671387] (imputed)	N
1130	chr11	71439751	71439752	rs139653456	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	11q13.4	NR	rs139653456-?	NR	3E-6				Illumina [NR] (imputed)	N
1130	chr11	71505624	71505625	rs142630661	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	11q13.4	ALG1L9P	rs142630661-G	0.009	8E-7	(ACE inhibitors, plain [C09AA])	5.24		Illumina [16500000] (imputed)	N
1130	chr11	71521070	71521071	rs4517550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q13.4		rs4517550-C	NR	4E-10		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1130	chr11	71524176	71524177	rs190164515	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11q13.4	NR	rs190164515-?	NR	4E-6	(Latino)	0.7365	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1131	chr11	71631124	71631125	rs10898811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.4	RP11-849H4.2	rs10898811-A	0.447154	4E-10		0.014232928	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q13.4	NR	rs7115200-G	0.4384	7E-11		0.001457	[0.001-0.0019] unit decrease	Affymetrix [NR] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q13.4	NR	rs7115200-G	NR	3E-12		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q13.4	NR	rs7115200-G	NR	1E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs7115200-T	0.565103	2E-12				Affymetrix, Illumina [17210439] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	11q13.4	NUMA1	rs7115200-G	0.44	1E-9	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	11q13.4	NUMA1	rs7115200-T	NR	9E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	11q13.4	NUMA1	rs7115200-T	0.5605	2E-9		0.0122547	[0.0082-0.0163] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	11q13.4	NUMA1	rs7115200-G	NR	7E-6		1.0315887	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
1132	chr11	71752159	71752160	rs7115200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.4		rs7115200-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1132	chr11	71762084	71762085	rs7116495	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	11q13.4	NUMA1	rs7116495-?	0.0	8E-17				Affymetrix [547296]	N
1132	chr11	71766173	71766174	rs7122209	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	11q13.4	NUMA1	rs7122209-C	0.003	8E-7	(C. pneumoniae)	1.98	[NR] unit decrease	Illumina [944565]	N
1133	chr11	71831516	71831517	rs10898822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q13.4	NR	rs10898822-A	NR	3E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr11	71850156	71850156	rs139130389	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	FOLR3	rs139130389-CTA	0.075	3E-72	(Stabilin-1, STAB1.14599.18.3)	0.82	[0.72-0.92] unit increase	Affymetrix [10572788] (imputed)	N
1133	chr11	71850156	71850156	rs139130389	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	FOLR3	rs139130389-CTA	0.075	1E-22	(Cystatin-8, CST8.10572.65.3)	0.46	[0.36-0.56] unit increase	Affymetrix [10572788] (imputed)	N
1133	chr11	71872776	71872777	rs559389	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	11q13.4	intergenic	rs559389-C	0.42	9E-6	(Baseline FEV1)	0.023	[NR] unit decrease	Illumina [473680]	N
1133	chr11	71886897	71886898	rs113425218	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	11q13.4	NR	rs113425218-?	NR	6E-6		2.2916	[0.98-3.6] unit decrease	Illumina [at least 560000] (imputed)	N
1133	chr11	71909986	71909987	rs34575766	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11q13.4	RP11-807H22.7	rs34575766-A	0.0103	6E-6		0.2022	[0.11-0.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1134	chr11	71984397	71984398	rs7130652	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	11q13.4	CLPB, INPPL1	rs7130652-G	0.927944	2E-11		0.075572	[0.053-0.098] unit decrease	Affymetrix [509255] (imputed)	N
1134	chr11	71999719	71999720	rs638138	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CLPB	rs638138-T	0.907042	4E-8	(-122 ms)	0.0539654	[0.035-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1134	chr11	72006085	72006086	rs504217	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q13.4	CLPB	rs504217-C	0.9264	3E-16		0.2745	[0.21-0.34] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1134	chr11	72008409	72008410	rs75219483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q13.4	CLPB	rs75219483-T	0.017784	3E-16		0.06964697	[0.053-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1134	chr11	72019085	72019086	rs1892871	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs1892871-A	0.0122	9E-11	(EMILIN2)	0.1258	NR unit increase	Illumina [1671387] (imputed)	N
1134	chr11	72023827	72023828	rs12416741	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q13.4	NR	rs12416741-?	NR	8E-19				Affymetrix [NR]	N
1134	chr11	72068278	72068282	rs113841147	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.4	CLPB	rs113841147-?	NR	1E-8		0.027735239	[0.018-0.037] unit decrease	Illumina [27896057] (imputed)	N
1135	chr11	72180349	72180350	rs6592471	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	11q13.4	NR	rs6592471-A	NR	2E-6	(African)	0.2896	[0.17-0.41] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1135	chr11	72194715	72194716	rs2365384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.4	Intergenic	rs2365384-T	0.5279	3E-8	(MTAG)	0.0091	[0.0058-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1135	chr11	72218971	72218972	rs181309176	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.4	Intergenic	rs181309176-T	0.999	3E-6	(AA)	0.282	unit increase	Illumina [NR] (imputed)	N
1136	chr11	72250122	72250123	rs12418204	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	11q13.4	PDE2A	rs12418204-G	NR	5E-6		0.305	[0.11-0.50] unit increase	Illumina [~ 2740000] (imputed)	N
1136	chr11	72257962	72257963	rs341075	26861389	D'Adamo CR	2016-02-06	Nutrients	A Common Variant in the SETD7 Gene Predicts Serum Lycopene Concentrations.	Serum lycopene concentrations	441 Old Order Amish individuals from 308 families	NA	11q13.4	intergenic	rs341075-A	0.02	6E-7		0.87	[NR] ug/dL decrease	Affymetrix [2302013] (imputed)	N
1136	chr11	72275908	72275909	rs183778342	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	11q13.4	intergenic	rs183778342-A	0.003	3E-6		1.273	[0.74-1.8] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1136	chr11	72317556	72317557	rs171021	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q13.4	NR	rs171021-C	0.702948	3E-21		0.0135666	[0.011-0.016] unit increase	Affymetrix [16578495] (imputed)	N
1136	chr11	72317556	72317557	rs171021	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q13.4	NR	rs171021-C	0.702846	4E-35		0.0383767	[0.032-0.044] unit increase	Affymetrix [16580851] (imputed)	N
1136	chr11	72317556	72317557	rs171021	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q13.4	NR	rs171021-C	0.703208	8E-9		0.0127562	[0.0085-0.0171] unit increase	Affymetrix [16583148] (imputed)	N
1136	chr11	72317556	72317557	rs171021	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q13.4	NR	rs171021-C	0.703178	1E-10		0.0180676	[0.013-0.024] unit increase	Affymetrix [16585745] (imputed)	N
1136	chr11	72327204	72327205	rs3781931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11q13.4	NR	rs3781931-T	NR	1E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr11	72340685	72340686	rs79693059	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.4	NR	rs79693059-G	0.0842	2E-11		1.0752687	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1136	chr11	72346295	72346296	rs151449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q13.4		rs151449-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1136	chr11	72348038	72348039	rs56133505	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.4	NR	rs56133505-A	0.5369	6E-12		1.042	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1136	chr11	72349389	72349390	rs341050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q13.4		rs341050-G	NR	2E-11		0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1136	chr11	72349731	72349731	rs3837412	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q13.4		rs3837412-?	NR	1E-9		0.0133928	[0.009-0.0177] unit decrease	Affymetrix [20259828] (imputed)	N
1137	chr11	72360934	72360935	rs55765314	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11q13.4	NR	rs55765314-C	0.838058	5E-10		0.0247992	[0.017-0.033] unit increase	Affymetrix [16577424] (imputed)	N
1137	chr11	72361882	72361883	rs341038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.4		rs341038-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1137	chr11	72364076	72364077	rs11602616	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q13.4	PDE2A, RP11-31L22.3	rs11602616-C	0.1635	2E-8		0.015384085	[0.01-0.0208] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1137	chr11	72364146	72364147	rs11604034	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11q13.4	NR	rs11604034-G	0.167992	2E-8		0.052579213	[0.034-0.071] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1137	chr11	72365668	72365669	rs72962169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.4		rs72962169-T	0.1595	1E-19		0.0174	[0.014-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr11	72365668	72365669	rs72962169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.4	Intergenic	rs72962169-T	0.1595	5E-21	(MTAG)	0.0168	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr11	72373495	72373496	rs3781913	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	11q13.4	PDE2A, ARAP1	rs3781913-T	0.69	6E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [1948139]	N
1137	chr11	72394146	72394147	rs12787293	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q13.4	NR	rs12787293-G	0.458136	8E-11		0.0199201	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1137	chr11	72404892	72404893	rs79145843	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q13.4		rs79145843-T	NR	1E-10		0.88	[0.84-0.91]	NR [13810676] (imputed)	N
1137	chr11	72405449	72405450	rs10898864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.4	ARAP1	rs10898864-T	0.268062	2E-16		0.021149421	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr11	72408054	72408055	rs56200889	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	11q13.4	CENTD2	rs56200889-G	0.721	2E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [247470]	N
1137	chr11	72408054	72408055	rs56200889	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11q13.4	CENTD2	rs56200889-G	0.733	5E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [247470]	N
1137	chr11	72408054	72408055	rs56200889	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	11q13.4	CENTD2	rs56200889-G	0.733	5E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1137	chr11	72416324	72416325	rs900616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	11q13.4		rs900616-G	0.508946	4E-19		0.0335015	[0.026-0.041] unit increase	Illumina [13477433] (imputed)	N
1137	chr11	72417113	72417114	rs11607038	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q13.4	NR	rs11607038-?	NR	2E-14		0.03695	[0.027-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1137	chr11	72428147	72428148	rs73541184	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	11q13.4	NR	rs73541184-G	0.9426	7E-11		0.1367	[0.096-0.178] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1137	chr11	72428171	72428172	rs76550717	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11q13.4	CENTD2, ARAP1	rs76550717-A	0.95	1E-11		1.16	1.11-1.20	Illumina [12557761] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11q13.4	ARAP1	rs11603334-A	0.1501	2E-11				Affymetrix, Illumina [2331072] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting glucose (pairwise)	380,336 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	11q13.4	ARAP1	rs11603334-A	0.1501	5E-10				Affymetrix, Illumina [2331072] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	11q13.4	ARAP1	rs11603334-A	0.1501	2E-10				Affymetrix, Illumina [2331072] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting glucose (pairwise)	148,718 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	11q13.4	ARAP1	rs11603334-A	0.1501	2E-9				Affymetrix, Illumina [2331072] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	11q13.4	ARAP1	rs11603334-G	0.814237	7E-6		0.016151	[0.0091-0.0232] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	11q13.4	ARAP1	rs11603334-G	0.814237	8E-10		0.023328	[0.016-0.031] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	11q13.4	ARAP1	rs11603334-G	0.814237	6E-15		0.01992	[0.015-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	11q13.4	ARAP1	rs11603334-G	0.815	7E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.4	ARAP1	rs11603334-A	0.172	9E-6	(EA)	0.018	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1137	chr11	72432984	72432985	rs11603334	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q13.4	ARAP1	rs11603334-A	0.171	4E-6		0.018	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1137	chr11	72432984	72432985	rs11603334	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	11q13.4	ARAP1	rs11603334-A	0.137458222039974	2E-6		0.021059299	[0.012-0.03] unit decrease	Illumina [197481]	N
1137	chr11	72432984	72432985	rs11603334	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	11q13.4	ARAP1	rs11603334-A	0.253	6E-45		0.081	[0.069-0.093] unit increase	Illumina [242071]	N
1137	chr11	72432984	72432985	rs11603334	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q13.4	ARAP1	rs11603334-A	0.1652	2E-14		0.001755	[0.00035-0.00316] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q13.4	ARAP1	rs11603334-A	0.1799	2E-9		0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1137	chr11	72432984	72432985	rs11603334	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	11q13.4	ARAP1	rs11603334-A	0.15	3E-102				Affymetrix, Illumina [~ 2500000] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	11q13.4		rs1552224-C	0.039030794	1E-10		0.8700702	[0.834060832-0.907634201]	Illumina [8919992] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11q13.4	ARAP1	rs1552224-C	0.15421045285969	9E-25		0.1034	[0.084-0.123] unit decrease	NR [5035015] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11q13.4	ARAP1	rs1552224-C	0.1501	3E-17		0.097	[0.073-0.121] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11q13.4	ARAP1	rs1552224-C	0.1501	1E-13	(EA)	0.1011	[0.074-0.128] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	11q13.4	ARAP1, CENTD2, STARD10	rs1552224-A		4E-6		0.14	[0.081-0.199] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	11q13.4	ARAP1	rs1552224-A	NR	5E-6	(additive model)	1.163	[1.1-1.23]	NR [9288881] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	11q13.4	CENTD2, ARAP1	rs1552224-A	0.83	1E-7		1.13	[1.08-1.19]	Affymetrix, Illumina [2500000] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11q13.4	ARAP1	rs1552224-A	NR	9E-9	(men)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11q13.4	ARAP1	rs1552224-A	0.81360202878336	2E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1137	chr11	72433097	72433098	rs1552224	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11q13.4	CENTD2	rs1552224-A		1E-22		1.14	[1.11-1.17]	Affymetrix, Illumina [2426886] (imputed)	N
1137	chr11	72434117	72434118	rs729120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q13.4		rs729120-T	NR	7E-16		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1137	chr11	72435982	72435983	rs57614870	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	11q13.4	ARAP1	rs57614870-?	NR	1E-47				NR [3144808] (imputed)	N
1137	chr11	72435995	72435996	rs59311588	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q13.4	Intergenic	rs59311588-A	0.7512	1E-10	(MTAG)	0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr11	72440123	72440124	rs72964181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.4	ARAP1	rs72964181-G	0.0908	2E-14		0.03035747	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1137	chr11	72444582	72444583	rs7123876	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.4	NA	rs7123876-T	0.7494	3E-10		0.0118	[0.0081-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1137	chr11	72444582	72444583	rs7123876	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11q13.4	NA	rs7123876-T	0.7494	3E-10		0.0118	[0.0081-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1137	chr11	72444582	72444583	rs7123876	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q13.4	ARAP1	rs7123876-T	0.28	1E-8	(Male)	0.02	[0.012-0.028] unit increase	Illumina [6108953] (imputed)	N
1137	chr11	72444614	72444615	rs7120605	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	11q13.4	ARAP1	rs7120605-A	0.9123	9E-6		0.6578	[0.37-0.95] unit decrease	Illumina [at least 4683137] (imputed)	N
1137	chr11	72450723	72450724	rs67072384	25670933	Hanchard NA	2014-11-07	Transfus Med Hemother	A Genome-Wide Screen for Large-Effect Alloimmunization Susceptibility Loci among Red Blood Cell Transfusion Recipients with Sickle Cell Disease.	Alloimmunization response to red blood cell transfusion in sickle cell anemia	48 African American responder cases, 46 African American non-responder cases	NA	11q13.4	ARAP1, STARD10	rs67072384-T	0.11	7E-7		6.22	[NR]	Illumina [1008655]	N
1137	chr11	72456217	72456218	rs10898870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q13.4		rs10898870-C	NR	8E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1137	chr11	72457486	72457487	rs74333814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q13.4	NR	rs74333814-T	NR	9E-30		0.0382	[0.032-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr11	72457486	72457487	rs74333814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	11q13.4	NR	rs74333814-T	NR	3E-13		0.0252	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr11	72460397	72460398	rs77464186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q13.4		rs77464186-C	NR	6E-25		0.1028	[0.083-0.122] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1137	chr11	72460397	72460398	rs77464186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11q13.4		rs77464186-C	NR	7E-17		0.114	[0.087-0.141] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1137	chr11	72460397	72460398	rs77464186	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11q13.4	ARAP1	rs77464186-A	0.8155	3E-25		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1137	chr11	72460397	72460398	rs77464186	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	11q13.4	ARAP1	rs77464186-C	0.156347	3E-11		0.105954185	[0.075-0.137] unit decrease	Affymetrix [7288503] (imputed)	N
1137	chr11	72460397	72460398	rs77464186	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q13.4	CENTD2, ARAP1	rs77464186-A	0.8363	5E-33		1.11	[1.09-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1137	chr11	72460761	72460762	rs11602873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q13.4		rs11602873-T	NR	3E-31		0.0353	[0.029-0.041] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1137	chr11	72460761	72460762	rs11602873	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.4	NR	rs11602873-T	0.1563	9E-52		0.0976	[0.085-0.11] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1137	chr11	72460761	72460762	rs11602873	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.4	NR	rs11602873-T	0.1459	2E-62		0.0987	[0.087-0.11] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1137	chr11	72460761	72460762	rs11602873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11q13.4		rs11602873-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1137	chr11	72462633	72462634	rs7122044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.4	Intergenic	rs7122044-A	0.7679	1E-17	(MTAG)	0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr11	72463434	72463435	rs7109575	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11q13.4	CENTD2, ARAP1	rs7109575-G	0.945	5E-21		1.15	[1.12-1.19]	Affymetrix, Illumina [11800000] (imputed)	N
1137	chr11	72463461	72463462	rs58249351	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q13.4	ARAP1	rs58249351-A	0.242	8E-9		0.013470075	[0.0089-0.0181] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1137	chr11	72470915	72470919	rs140130268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	11q13.4		rs140130268-G	NR	7E-15		0.0255	[0.019-0.032] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1137	chr11	72473261	72473262	rs1277060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q13.4		rs1277060-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1137	chr11	72473261	72473262	rs1277060	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q13.4	Intergenic	rs1277060-T	0.7662	6E-10		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr11	72473261	72473262	rs1277060	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q13.4	Intergenic	rs1277060-T	0.7459	2E-10	(MTAG)	0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr11	72478319	72478320	rs77106637	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	11q13.4	ARAP1, CENTD2	rs77106637-G	NR	3E-6	(Japanese)	1.22079	[1.12338-1.32665]	Illumina [7521072] (imputed)	N
1138	chr11	72486665	72486666	rs555655470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q13.4	ARAP1, STARD10	rs555655470-C	0.9982	5E-6		1.5992	[0.91-2.28] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1138	chr11	72486665	72486666	rs555655470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11q13.4	ARAP1, STARD10	rs555655470-C	0.9982	1E-6		1.6848	[1-2.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1138	chr11	72486665	72486666	rs555655470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11q13.4	ARAP1, STARD10	rs555655470-C	0.9982	1E-6		1.6848	[1-2.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1138	chr11	72496147	72496148	rs7121935	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	11q13.4	STARD10	rs7121935-A	0.38	5E-9		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1138	chr11	72497461	72497462	rs481206	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q13.4	STARD10	rs481206-T	0.34	5E-12		6.9	z-score increase	Affymetrix [4312306] (imputed)	N
1138	chr11	72497461	72497462	rs481206	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	11q13.4	NR	rs481206-T	NR	2E-6		1.1922	NR	Illumina [at least 560000] (imputed)	N
1138	chr11	72497461	72497462	rs481206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.4	STARD10, ARAP1	rs481206-T	0.342187	2E-9		0.014069535	[0.0095-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1138	chr11	72499034	72499035	rs663015	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q13.4	NR	rs663015-T	0.658171	1E-18		0.0188773	[0.015-0.023] unit decrease	NR [NR]	N
1138	chr11	72501001	72501002	rs3862791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q13.4		rs3862791-T	0.037534276	2E-11		0.16938457	[0.12-0.22] unit decrease	Illumina [13429769] (imputed)	N
1138	chr11	72501219	72501220	rs56133113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs56133113-G	0.126221	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
1138	chr11	72501219	72501220	rs56133113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.4	NR	rs56133113-G	0.1179	3E-11		0.018916	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1138	chr11	72501219	72501220	rs56133113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q13.4	STARD10, ARAP1	rs56133113-G	0.1187	7E-15		0.04351674	[0.033-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1138	chr11	72501407	72501407	rs11398692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q13.4	NR	rs11398692-C	0.520097	4E-8		0.00668177	[0.0044-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
1138	chr11	72501407	72501407	rs11398692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q13.4	NR	rs11398692-C	0.520097	6E-6		0.00594127	[0.0035-0.0084] unit increase	Affymetrix [16582614] (imputed)	N
1138	chr11	72504140	72504141	rs519790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	11q13.4		rs519790-G	NR	1E-16		0.0189	[0.014-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1138	chr11	72504140	72504141	rs519790	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q13.4	STARD10	rs519790-C	0.658664	3E-22		0.0039489	[0.0031-0.0048] unit decrease	Affymetrix [13995440] (imputed)	N
1138	chr11	72504140	72504141	rs519790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.4		rs519790-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1138	chr11	72507258	72507277	rs71062788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q13.4		rs71062788-G	NR	2E-12		0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1138	chr11	72509337	72509337	rs35916673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q13.4		rs35916673-CT	NR	2E-19		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1138	chr11	72520529	72520530	rs4944804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs4944804-A	0.2561	7E-10	(STARD10)	0.01853	NR unit decrease	Illumina [1671387] (imputed)	N
1138	chr11	72521286	72521287	rs11235598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q13.4		rs11235598-A	NR	2E-10		0.0178	[0.012-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1138	chr11	72533535	72533536	rs11235604	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Coronary artery disease	29,319 Japanese ancestry cases, 183,134 Japanese ancestry controls	2,855 Japanese ancestry cases, 15,211 Japanese ancestry controls	11q13.4		rs11235604-?	NR	6E-10		0.9054824	[0.87749806987345-0.934359181277434]	Illumina [8919992] (imputed)	N
1138	chr11	72533535	72533536	rs11235604	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q13.4	ATG16L2	rs11235604-?	NR	1E-21		0.07529	[0.06-0.091] unit decrease novel	Illumina [6108953] (imputed)	N
1138	chr11	72538545	72538546	rs11604683	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.4		rs11604683-T	0.773579	4E-10		0.030727	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1138	chr11	72549344	72549345	rs117512134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q13.4	NR	rs117512134-A	NR	2E-16		0.0477	[0.036-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr11	72640479	72640480	rs77971648	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q13.4	FCHSD2	rs77971648-T	0.909	3E-23		1.291	[1.24-1.34]	Illumina [11270530] (imputed)	N
1139	chr11	72670899	72670900	rs72981516	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q13.4	FCHSD2	rs72981516-?	NR	6E-17		0.06713	[0.051-0.083] unit increase novel	Illumina [6108953] (imputed)	N
1139	chr11	72670899	72670900	rs72981516	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	11q13.4	ATG16L2, FCHSD2	rs72981516-T	0.12	4E-7		1.28	[1.27-1.29]	Illumina [4929034] (imputed)	N
1139	chr11	72691439	72691440	rs593753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q13.4		rs593753-T	0.245334	2E-9		0.0289741	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1140	chr11	72750972	72750972	rs199882651	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	11q13.4	NR	rs199882651-?	NR	9E-6		0.836	NR	Illumina [at least 560000] (imputed)	N
1140	chr11	72781253	72781254	rs117610694	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	11q13.4	FCHSD2	rs117610694-T	0.01153000000000004	6E-7		1.47	[1.26-1.71]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1140	chr11	72800630	72800631	rs117374082	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11q13.4	FCHSD2	rs117374082-G	NR	3E-6		0.02907	[0.017-0.041] unit increase	Illumina [NR] (imputed)	N
1140	chr11	72805861	72805862	rs11235654	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	11q13.4	FCHSD2	rs11235654-?	NR	6E-15		0.03376	[0.025-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1140	chr11	72805861	72805862	rs11235654	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q13.4	FCHSD2	rs11235654-G	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1140	chr11	72863696	72863697	rs11235667	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	11q13.4	FCHSD2, P2RY2, ATG16L2	rs11235667-?	NR	7E-11		1.5873016	[1.39-1.82]	Illumina [NR]	N
1140	chr11	72863696	72863697	rs11235667	23850713	Yang SK	2013-07-14	Gut	Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.	Crohn's disease	532 Korean ancestry cases, 733 Korean ancestry controls	1,779 Korean ancestry cases, 1,709 Korean ancestry controls	11q13.4	STARD10, ATG16L2, FCHSD2	rs11235667-G	0.096	7E-9		1.46	[1.28-1.65]	Illumina [5664371] (imputed)	N
1141	chr11	72877963	72877964	rs1791936	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	11q13.4		rs1791936-G	0.396258	5E-8		0.0228866	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1141	chr11	72877963	72877964	rs1791936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q13.4		rs1791936-A	NR	1E-22		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1141	chr11	72885121	72885122	rs1783591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.4		rs1783591-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1141	chr11	72887288	72887289	rs148607513	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11q13.4	RP11-800A3.3	rs148607513-G	NR	2E-6		0.0288	[0.017-0.041] unit increase	Illumina [NR] (imputed)	N
1141	chr11	72894272	72894273	rs11603160	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	11q13.4	P2RY2	rs11603160-T	0.18	8E-6	(adult)			Illumina [up to 536451]	N
1141	chr11	72894847	72894848	rs1791933	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	11q13.4	P2RY2	rs1791933-?	0.98	8E-6		3.7	[2.08-6.67]	Illumina [2380486] (imputed)	N
1141	chr11	72943482	72943483	rs149467613	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	11q13.4	P2RY2	rs149467613-A	0.05	3E-8		0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1141	chr11	72943482	72943483	rs149467613	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	11q13.4	P2RY2	rs149467613-A	0.05	2E-6		0.063	[0.038-0.088] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1141	chr11	72943482	72943483	rs149467613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	11q13.4	P2RY2	rs149467613-A	0.0488	5E-27		0.0905766	[0.074-0.107] unit increase	Affymetrix [~ 2500000] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGLYRP1	5,365 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	2E-12		0.254721	[0.18-0.33] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLR1	5,368 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	6E-12		0.250679	[0.18-0.32] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLR1	5,368 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	5E-13		0.262786	[0.19-0.33] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP8	5,368 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	3E-17		0.307482	[0.24-0.38] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGF	5,364 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	2E-17		0.304456	[0.23-0.37] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISPLD2	5,366 Icelandic ancestry individuals	NA	11q13.4		rs2511241-C	0.07691	3E-13		0.263265	[0.19-0.33] unit decrease	Illumina [7506463] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	11q13.4	P2RY2	rs2511241-?	NR	5E-8		0.0033	[0.0023-0.0043] unit increase	Affymetrix [21347608] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	11q13.4	P2RY2	rs2511241-?	NR	1E-8		0.006	[0.0044-0.0076] unit increase	Affymetrix [21347608] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	11q13.4		rs2511241-T	0.92	9E-20		0.1478	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1141	chr11	72945340	72945341	rs2511241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q13.4	P2RY2	rs2511241-T	0.9287486	3E-19		0.040249445	[0.031-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72946139	72946140	rs3741156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q13.4	P2RY2	rs3741156-C	0.238914	2E-12		0.021384355	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72946139	72946140	rs3741156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11q13.4	P2RY2	rs3741156-C	0.238959	3E-21		0.026936485	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72946139	72946140	rs3741156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q13.4	P2RY2	rs3741156-C	0.238984	3E-24		0.028884098	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	11q13.4		rs74472890-C	NR	2E-35		0.0575	[0.048-0.067] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	11q13.4		rs74472890-T	0.95	1E-34				Affymetrix [10369434] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q13.4	P2RY2	rs74472890-C	0.0493209999999999	2E-15		0.040663697	[0.031-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.4	P2RY2	rs74472890-C	0.049325	2E-16		0.042986877	[0.033-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11q13.4	P2RY2	rs74472890-C	0.049377	4E-70		0.0992903	[0.088-0.11] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q13.4	P2RY2	rs74472890-C	0.049399	6E-64		0.094587885	[0.084-0.106] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs74472890-C	0.0481985	6E-102				Affymetrix, Illumina [19905671] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q13.4	NR	rs74472890-C	0.04944	1E-103		0.102642	[0.093-0.112] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	11q13.4	P2RY2	rs74472890-C	0.05	1E-25		0.08349794	[0.068-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
1141	chr11	72946278	72946279	rs74472890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	11q13.4	P2RY2	rs74472890-C	0.0499	2E-23		0.08057786	[0.065-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q13.4		rs11235688-A	NR	2E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs11235688-A	0.417621	7E-18		0.01973491	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs11235688-A	0.417389	2E-19		0.020764379	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs11235688-A	0.417652	3E-23		0.022836816	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs11235688-G	0.58682	1E-36				Affymetrix, Illumina [17210439] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q13.4	NR	rs11235688-G	0.582186	5E-40		0.025838	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs11235688-A	0.396486	1E-9				Affymetrix, Illumina [21126107] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q13.4	NR	rs11235688-G	0.583068	4E-16		0.0222542	[0.017-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q13.4	NR	rs11235688-G	0.583063	7E-12		0.0164676	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q13.4	RP11-800A3.4	rs11235688-A	0.4175	6E-10		0.0230823	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1141	chr11	72947933	72947934	rs11235688	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q13.4	RP11-800A3.4	rs11235688-A	0.4175	5E-11		0.02417698	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1141	chr11	72949171	72949172	rs4944832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs4944832-A	0.413976	5E-10		0.014178907	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72949171	72949172	rs4944832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs4944832-A	0.413968	9E-11		0.014756074	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72949171	72949172	rs4944832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs4944832-A	0.414043	2E-9		0.013539101	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr11	72949171	72949172	rs4944832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs4944832-A	0.393323	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
1141	chr11	72949171	72949172	rs4944832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q13.4	NR	rs4944832-A	0.414591	2E-10		0.012993	[0.009-0.017] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1141	chr11	72949746	72949747	rs11235689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q13.4	RP11-800A3.4	rs11235689-T	0.413943	5E-37		0.033672154	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1141	chr11	72949746	72949747	rs11235689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q13.4	NR	rs11235689-T	0.413912	5E-16		0.016087	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1141	chr11	72952495	72952496	rs10898909	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q13.4	P2RY2	rs10898909-?		4E-6	(AIRg)	1.41	[0.76-2.06] unit increase	Illumina [693128]	N
1142	chr11	73020845	73020846	rs3741151	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q13.4		rs3741151-T	0.1114	1E-8		0.1303583	[0.087-0.173] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1142	chr11	73020845	73020846	rs3741151	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	11q13.4	ARHGEF17	rs3741151-T	0.138	1E-6		0.052	[0.03-0.074] unit increase	Illumina [at least 81396]	N
1142	chr11	73036178	73036179	rs2027761	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	11q13.4	ARHGEF17	rs2027761-T	0.113	2E-7		0.0206	[0.013-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1142	chr11	73036178	73036179	rs2027761	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11q13.4	ARHGEF17	rs2027761-T	0.113	1E-22		0.0369	[0.029-0.044] unit increase	Affymetrix [19819130] (imputed)	N
1142	chr11	73036178	73036179	rs2027761	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11q13.4	ARHGEF17	rs2027761-T	0.113	3E-14		0.0282	[0.021-0.035] unit increase	Affymetrix [19819130] (imputed)	N
1142	chr11	73036480	73036481	rs2027760	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	11q13.4	ARHGEF	rs2027760-A	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1142	chr11	73036480	73036481	rs2027760	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	11q13.4	ARHGEF	rs2027760-A	NR	1E-6	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1142	chr11	73039228	73039229	rs7125978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.4		rs7125978-?	NR	7E-27				NR [~ 8900000] (imputed)	N
1142	chr11	73068570	73068571	rs2298807	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q13.4	FAM168A	rs2298807-T	0.7842	5E-9		0.1233	[0.082-0.165] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1142	chr11	73110667	73110668	rs7118982	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q13.4	RELT	rs7118982-T	0.833125	2E-33	(RELT, 5115_31_3)	0.36696842	[0.31-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1142	chr11	73114722	73114723	rs3741148	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	RELT	rs3741148-G	0.204	7E-16	(Tumor necrosis factor receptor superfamily member 19L, RELT.14112.40.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1142	chr11	73123511	73123512	rs73542967	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RELT	5,365 Icelandic ancestry individuals	NA	11q13.4		rs73542967-T	0.1645	4E-60		0.370405	[0.33-0.41] unit increase	Illumina [7506463] (imputed)	N
1142	chr11	73128502	73128503	rs7952686	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	RELT	rs7952686-T	0.204	3E-45	(Tumor necrosis factor receptor superfamily member 19L, RELT.5115.31.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1143	chr11	73179819	73179820	rs144627013	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11q13.4		rs144627013-G	NR	6E-6		1.25948		Affymetrix, Illumina [62056310] (imputed)	N
1143	chr11	73228684	73228685	rs7119167	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.4	FAM168A	rs7119167-T	0.788682	1E-8		0.0136483	[0.0089-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1143	chr11	73228684	73228685	rs7119167	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q13.4	RELT, RP11-809N8.4, FAM168A, RP11-809N8.5, RP11-809N8.2, RP11-809N8.6, HMGN2P38	rs7119167-C	0.1983887	6E-16	(EA, Tumor necrosis factor receptor superfamily member 19L)	0.4041	[0.31-0.5] unit increase	Affymetrix [509946]	N
1143	chr11	73233854	73233855	rs1278092	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q13.4	P2RY6, ARHGEF17, RELT, FAM168A	rs1278092-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
1144	chr11	73291162	73291163	rs769422497	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	11q13.4	FAM168A	rs769422497-T	0.9985	6E-7		1.1132	[0.68-1.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1144	chr11	73305858	73305859	rs1145656	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q13.4	FAM168A	rs1145656-C	0.171322	3E-9		0.0144834	[0.0097-0.0193] unit decrease	NR [13737936] (imputed)	N
1144	chr11	73308769	73308770	rs146158951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.4	FAM168A	rs146158951-A	0.105403	8E-10		0.022694308	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1144	chr11	73309392	73309393	rs7943721	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q13.4		rs7943721-G	0.16	2E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1144	chr11	73309392	73309393	rs7943721	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q13.4	NR	rs7943721-A	0.829	4E-10		0.02121361	[0.015-0.028] unit decrease	NR [~ 10000000] (imputed)	N
1144	chr11	73311074	73311075	rs78973710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs78973710-G	0.0919097	4E-10				Affymetrix, Illumina [24588908] (imputed)	N
1144	chr11	73311074	73311075	rs78973710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.4	NR	rs78973710-G	0.105077	6E-12		0.020898	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1144	chr11	73311704	73311705	rs4944844	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q13.4	NR	rs4944844-C	0.829	2E-12		0.0101559	[0.0073-0.013] unit decrease	NR [9732723] (imputed)	N
1144	chr11	73312251	73312252	rs10751226	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q13.4	PLEKHB1	rs10751226-T	0.826	3E-8		0.014731288	[0.0095-0.0199] unit decrease	Affymetrix [11514654] (imputed)	N
1144	chr11	73312251	73312252	rs10751226	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	11q13.4	FAM168A, PLEKHB	rs10751226-T	NR	4E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1144	chr11	73312251	73312252	rs10751226	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	11q13.4	FAM168A, PLEKHB	rs10751226-T	NR	3E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1144	chr11	73342178	73342179	rs4019485	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q13.4		rs4019485-T	0.16	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr11	73342178	73342179	rs4019485	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q13.4	NR	rs4019485-T	0.1381	1E-9				NR [9056863] (imputed)	N
1144	chr11	73359235	73359236	rs1784499	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q13.4	PLEKHB1	rs1784499-?		6E-6	(MCRI)	0.97	[0.54-1.4] unit increase	Illumina [693128]	N
1144	chr11	73366647	73366648	rs574506011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q13.4	NR	rs574506011-A	0.004611	1E-11		0.093303	[0.066-0.12] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1144	chr11	73366647	73366648	rs574506011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q13.4	NR	rs574506011-A	0.004605	3E-10		0.091882	[0.063-0.12] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1144	chr11	73373995	73373996	rs11235843	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Hand grip strength	27,581 European ancestry individuals	6,393 individuals	11q13.4	PLEKHB1	rs11235843-A	0.1	1E-6		0.38	[0.22-0.54] kg decrease	Affymetrix, Illumina [2725778] (imputed)	N
1144	chr11	73378141	73378142	rs12274970	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	11q13.4	NR	rs12274970-C	0.268	3E-7		0.42	[0.26-0.58] unit increase	Illumina [9469131] (imputed)	N
1145	chr11	73455291	73455292	rs10898940	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q13.4	NR	rs10898940-A	0.5173	8E-9		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1145	chr11	73477044	73477045	rs1723838	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q13.4	RAB6A, MRPL48	rs1723838-A	0.032	4E-6	(Diet carbohydrate )	0.02	[NR] %energy increase	Illumina [899892]	N
1145	chr11	73511892	73511893	rs1723832	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q13.4	NR	rs1723832-A	0.2902	1E-9				NR [9056863] (imputed)	N
1145	chr11	73523779	73523779	rs200574504	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	11q13.4	NR	rs200574504-ATT	0.191	2E-7		0.47	[0.29-0.65] unit increase	Illumina [9469131] (imputed)	N
1145	chr11	73523779	73523779	rs200574504	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	11q13.4	NR	rs200574504-ATT	0.1907	4E-7		0.1021046	[0.063-0.141] unit increase	Illumina [9469131] (imputed)	N
1146	chr11	73572494	73572495	rs113485090	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11q13.4	MRPL48	rs113485090-A	0.04	2E-7	(males)	0.32	[0.2-0.44] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1146	chr11	73593356	73593356	rs377733465	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11q13.4		rs377733465-C	0.059795	4E-6		0.064852	[0.037-0.092] unit decrease	Affymetrix [15580782] (imputed)	N
1147	chr11	73664156	73664157	rs150037652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q13.4		rs150037652-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1147	chr11	73668551	73668552	rs72982960	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.4		rs72982960-A	0.13	3E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
1147	chr11	73698841	73698841	rs533549530	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q13.4	UCP2	rs533549530-CT	0.337903	4E-11		0.01613059	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1147	chr11	73698841	73698841	rs533549530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q13.4	NR	rs533549530-I	0.337277	3E-10		0.013471	[0.0093-0.0177] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1148	chr11	73892895	73892896	rs56808069	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAC3	5,353 Icelandic ancestry individuals	NA	11q13.4		rs56808069-C	0.01025	4E-12		0.148629	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1149	chr11	74039146	74039147	rs10898979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q13.4		rs10898979-T	NR	5E-9		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1149	chr11	74039146	74039147	rs10898979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q13.4	PGM2L1, RP11-632K5.3	rs10898979-T	0.508753	2E-9		0.01335097	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr11	74039146	74039147	rs10898979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q13.4	PGM2L1, RP11-632K5.3	rs10898979-T	0.508742	1E-11		0.0149942115	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr11	74040993	74040994	rs3867269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs3867269-C	0.49743	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
1149	chr11	74052263	74052264	rs41349744	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal atrophy	325 European ancestry older adult individuals	NA	11q13.4	PGM2L1, P4HA3	rs41349744-?		5E-6				Affymetrix [at least 734550] (imputed)	N
1150	chr11	74057354	74057355	rs7129306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q13.4		rs7129306-C	NR	9E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1150	chr11	74109552	74109553	rs78431863	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	11q13.4		rs78431863-C	0.958775	3E-14		0.0794215	[0.059-0.1] unit decrease	NR [11722792] (imputed)	N
1150	chr11	74117461	74117462	rs593531	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11q13.4	NR	rs593531-T	0.251	2E-6		0.018891748	[0.011-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
1150	chr11	74146966	74146967	rs77813653	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AP001372.1	rs77813653-?	NR	8E-9	(female)	0.717767	[NR] unit increase	Affymetrix [NR] (imputed)	N
1150	chr11	74148683	74148684	rs66570137	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q13.4	NR	rs66570137-T	0.102	6E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1150	chr11	74166277	74166278	rs9516	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	11q13.4	NR	rs9516-G	0.437	3E-6		0.1408	[0.082-0.2] unit decrease	Illumina [10677593] (imputed)	N
1150	chr11	74168410	74168411	rs2270676	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios	11q13.4	KCNE3	rs2270676-G	NR	5E-6		1.29	[1.17-1.41]	Illumina [460528]	N
1151	chr11	74194006	74194007	rs56291869	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	11q13.4	LIPT2, KCNE3	rs56291869-T	0.087239	1E-6		0.534137	[0.32-0.75] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1151	chr11	74194649	74194650	rs601419	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	11q13.4		rs601419-A	0.72	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1151	chr11	74195273	74195274	rs581831	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	11q13.4		rs581831-T	0.72	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1151	chr11	74271171	74271172	rs12802128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.4	NR	rs12802128-T	0.0976174	5E-11				Affymetrix, Illumina [24653286] (imputed)	N
1151	chr11	74271171	74271172	rs12802128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q13.4	NR	rs12802128-T	0.102191	4E-13		0.022201	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1151	chr11	74271171	74271172	rs12802128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q13.4	NR	rs12802128-T	0.102218	4E-13		0.022178	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1151	chr11	74272173	74272174	rs77984796	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	11q13.4	LOC100287896, POLD3	rs77984796-C	0.017	4E-7		2.56	[1.78-3.68]	Illumina [7206774] (imputed)	N
1151	chr11	74274006	74274007	rs7929392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.4		rs7929392-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1151	chr11	74280011	74280012	rs7121958	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q13.4	POLD3	rs7121958-G	0.5105	1E-20		1.08	[1.07-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1151	chr11	74300233	74300234	rs10899012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q13.4		rs10899012-G	NR	2E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1151	chr11	74300440	74300441	rs72977282	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	11q13.4	POLD3	rs72977282-A	0.4132	9E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1152	chr11	74331878	74331879	rs4145953	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	11q13.4	NR	rs4145953-A	0.8	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1152	chr11	74335621	74335622	rs72979206	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	11q13.4		rs72979206-?	NR	3E-6		0.709909	[0.41-1.01] unit increase	Illumina [9875426] (imputed)	N
1152	chr11	74338053	74338054	rs10899021	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	11q13.4	POLD3	rs10899021-?	NR	6E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1152	chr11	74338354	74338355	rs57796856	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	11q13.4	NR	rs57796856-T	NR	4E-16		1.09	[1.07-1.12]	Affymetrix, Illumina [> 10000000] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	11q13.4	POLD3	rs3824999-G	NR	1E-6	(East Asian)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	11q13.4	POLD3	rs3824999-G	0.41	3E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	11q13.4	NR	rs3824999-G	0.524	4E-10	(EA)	1.0752687	[1.05-1.1]	Affymetrix, Illumina [12931465] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	11q13.4	POLD3	rs3824999-G	0.53	1E-6		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	11q13.4	POLD3	rs3824999-C	0.47	8E-11		1.15	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1152	chr11	74345549	74345550	rs3824999	22634755	Dunlop MG	2012-05-27	Nat Genet	Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk.	Colorectal cancer	8,323 European ancestry cases, 9,457 European ancestry controls	19,513 European ancestry cases, 17,657 European ancestry controls, 1,583 Japanese ancestry cases, 1,898 Japanese ancestry controls	11q13.4	POLD3	rs3824999-?	NR	4E-10		1.08	[1.05-1.10]	Illumina [NR] (imputed)	N
1152	chr11	74350782	74350783	rs7925747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	11q13.4		rs7925747-T	NR	3E-8		0.0979	[0.063-0.133] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
1152	chr11	74355522	74355523	rs72979233	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total knee replacement)	18,200 European ancestry cases, 233,841 European ancestry controls	NA	11q13.4		rs72979233-A	0.7529	3E-9		0.9193393	[0.89428077-0.945100028]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr11	74355522	74355523	rs72979233	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	11q13.4	CHRDL2	rs72979233-G	0.257	2E-11		0.05	[0.035-0.064] unit decrease	Illumina [33400000] (imputed)	N
1152	chr11	74355522	74355523	rs72979233	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	11q13.4	POLD3	rs72979233-A	0.757	5E-13		0.1752	[0.13-0.22] kg increase	Affymetrix [at least 17000000] (imputed)	N
1152	chr11	74357363	74357364	rs10793095	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.4		rs10793095-A	0.16	2E-30		11.46	z score increase	Affymetrix [9061022] (imputed)	N
1152	chr11	74367383	74367384	rs7128944	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q13.4		rs7128944-G	0.16	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
1152	chr11	74367383	74367384	rs7128944	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q13.4	NR	rs7128944-G	0.1841	3E-11				NR [9056863] (imputed)	N
1152	chr11	74374949	74374950	rs4420291	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q13.4	POLD3	rs4420291-A	0.5055	6E-10		0.0937	[0.064-0.123] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1152	chr11	74381028	74381029	rs6592590	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHRDL2	5,366 Icelandic ancestry individuals	NA	11q13.4		rs6592590-T	0.448	2E-17		0.155189	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
1152	chr11	74385145	74385146	rs11822234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	NR	rs11822234-T	0.41	8E-16	(Chordin-like protein 2, CHRDL2.6086.15.3)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
1152	chr11	74393170	74393171	rs10899033	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	11q13.4	CHRDL2, MIR4696, POLD3	rs10899033-C	0.72	9E-6		0.11	[0.061-0.159] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1152	chr11	74394368	74394369	rs11236213	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	11q13.4	RN7SKP297	rs11236213-A	0.3136	3E-10		0.0504	[0.035-0.066] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
1152	chr11	74394368	74394369	rs11236213	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	11q13.4	RN7SKP297	rs11236213-G	0.69	3E-8		0.054	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
1152	chr11	74394368	74394369	rs11236213	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q13.4	NR	rs11236213-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1152	chr11	74394368	74394369	rs11236213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q13.4		rs11236213-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1152	chr11	74399424	74399425	rs1893361	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	11q13.4	CHRDL2	rs1893361-?	NR	7E-7	(Latino)	1.66	[1.46-1.86]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr11	74408739	74408740	rs3741122	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	11q13.4	NR	rs3741122-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
1152	chr11	74409076	74409077	rs7946853	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q13.4	POLD3	rs7946853-C	0.8624	3E-6	(conditioned on lead SNPs in LD)	1.06	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1152	chr11	74414918	74414919	rs11607100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	CHRDL2	rs11607100-T	0.042	6E-26	(Chordin-like protein 2, CHRDL2.6086.15.3)	0.64	[0.52-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
1152	chr11	74414918	74414919	rs11607100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q13.4	CHRDL2	rs11607100-T	0.042	2E-12	(Bone morphogenetic protein 6, BMP6.8459.10.3)	0.43	[0.31-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
1152	chr11	74415251	74415252	rs4944940	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	11q13.4	NR	rs4944940-G	0.96	1E-20		1.31	[1.24-1.39]	Affymetrix, Illumina [> 10000000] (imputed)	N
1152	chr11	74420702	74420703	rs76136269	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP6	5,365 Icelandic ancestry individuals	NA	11q13.4		rs76136269-T	0.05569	6E-34		0.489039	[0.41-0.57] unit decrease	Illumina [7506463] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	9E-11	(16 ms)	0.0882151	[0.062-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	9E-11	(10 ms)	0.0888069	[0.062-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	3E-9	(6 ms)	0.0792644	[0.053-0.106] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	3E-8	(2 ms)	0.0728461	[0.047-0.099] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	2E-8	(4 ms)	0.0744481	[0.048-0.101] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	2E-10	(8 ms)	0.0860511	[0.06-0.112] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	2E-10	(12 ms)	0.0887806	[0.062-0.115] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427076	74427076	rs777300465	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q13.4	CHRDL2	rs777300465-TA	0.954332	1E-10	(14 ms)	0.08793	[0.062-0.114] unit increase	Affymetrix [10000000] (imputed)	N
1152	chr11	74427920	74427921	rs61389091	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHRDL2	5,366 Icelandic ancestry individuals	NA	11q13.4		rs61389091-T	0.05578	1E-85		0.763698	[0.69-0.84] unit decrease	Illumina [7506463] (imputed)	N
1152	chr11	74427920	74427921	rs61389091	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q13.4	POLD3	rs61389091-C	0.9606	1E-18		1.23	[1.18-1.29]	Affymetrix, Illumina [16900397] (imputed)	N
1152	chr11	74430101	74430102	rs11236228	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q13.4	NR	rs11236228-G	0.94625	1E-47	(CHRDL2, 6086_15_3)	0.7451898	[0.65-0.84] unit increase	Illumina [> 1000000] (imputed)	N
1152	chr11	74430101	74430102	rs11236228	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q13.4	NR	rs11236228-G	0.94625	1E-15	(BMP6, 8459_10_3)	0.4235726	[0.32-0.53] unit increase	Illumina [> 1000000] (imputed)	N
1153	chr11	74456002	74456003	rs533220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.4		rs533220-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1153	chr11	74485390	74485390	rs35058879	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q13.4	RNF169	rs35058879-CA	0.2191	9E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1154	chr11	74625996	74625997	rs480840	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.4	NR	rs480840-C	0.4232	4E-8		0.0254	[0.016-0.034] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1154	chr11	74656657	74656658	rs193143010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	11q13.4		rs193143010-T	NR	4E-9		0.1527	[0.1-0.2] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1155	chr11	74816491	74816492	rs2712788	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q13.4	NR	rs2712788-A	0.358	8E-7	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1156	chr11	74887293	74887294	rs3758773	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q13.4	NR	rs3758773-?	NR	1E-13		0.25	[0.17-0.33] unit increase	Illumina [at least 830937] (imputed)	N
1156	chr11	74971556	74971557	rs17133858	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	11q13.4	ARRB1	rs17133858-T	0.14	6E-6	(AA-triglyceride response)	20.99	[11.92-30.06] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1157	chr11	74974989	74974990	rs35329661	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	11q13.4	NR	rs35329661-T	NR	7E-6	(Females)	0.033	[-0.00032-0.06632] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1157	chr11	74974989	74974990	rs35329661	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	11q13.4	ARRB1, CTD-2562J17.7, CTD-2562J17.9	rs35329661-T	0.013	2E-7	(Hispanic, females)	0.134	[0.083-0.185] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1157	chr11	75062126	75062127	rs79950403	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.4	NR	rs79950403-T	0.01742	2E-8	(EMILIN2)	0.09831	NR unit increase	Illumina [1671387] (imputed)	N
1157	chr11	75085562	75085563	rs12271945	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q13.4		rs12271945-A	0.13	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1157	chr11	75099544	75099545	rs34775308	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	11q13.4		rs34775308-T	0.88	3E-7		0.0613	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1158	chr11	75128338	75128339	rs3018100	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	11q13.4	intergenic	rs3018100-G	0.275	5E-6	(AA)	0.616	unit increase	Illumina [at least 5086170] (imputed)	N
1158	chr11	75158349	75158350	rs566818	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q13.4	GDPD5	rs566818-A	0.314	6E-6		0.032	[0.018-0.046] unit increase	Affymetrix [7947838] (imputed)	N
1159	chr11	75248456	75248457	rs606460	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	11q13.5	GDPD5	rs606460-G	0.725	4E-6	(opposite direction)	1.11	[1.06-1.17]	Illumina [up to 6000000] (imputed)	N
1159	chr11	75253827	75253828	rs7109103	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.5	GDPD5, SERPINH1	rs7109103-?	NR	2E-8		0.022495644	[0.015-0.03] unit increase	Illumina [27896057] (imputed)	N
1159	chr11	75258783	75258784	rs118132858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q13.5	SERPINH1	rs118132858-A	NR	2E-9		0.0771822	[0.052-0.103] unit decrease	Affymetrix [321169] (imputed)	N
1159	chr11	75274149	75274150	rs590121	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q13.5	SERPINH1	rs590121-T	0.3015	2E-10		0.0386	[0.027-0.051] unit increase	NR [8041861] (imputed)	N
1159	chr11	75274686	75274687	rs589374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q13.5	SERPINH1	rs589374-C	NR	1E-8		0.0176506	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1159	chr11	75275478	75275479	rs668347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q13.5		rs668347-G	NR	3E-73		0.0279	[0.025-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1159	chr11	75275478	75275479	rs668347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q13.5		rs668347-G	0.549768	4E-25		0.0209683	[0.017-0.025] unit decrease	Illumina [13479295] (imputed)	N
1159	chr11	75275478	75275479	rs668347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q13.5	SERPINH1	rs668347-T	NR	2E-15		0.0351533	[0.026-0.044] unit increase	Affymetrix [321114] (imputed)	N
1159	chr11	75276177	75276178	rs606452	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11q13.5	SERPINH1	rs606452-C	0.817331	1E-7		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1159	chr11	75276177	75276178	rs606452	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	11q13.5	NR	rs606452-?	NR	2E-15		0.04854088	[0.037-0.061] unit decrease	Illumina [34656550] (imputed)	N
1159	chr11	75276177	75276178	rs606452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.5		rs606452-?	NR	2E-106				NR [~ 8900000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11q13.5	SERPINH1	rs606452-A	0.1707	5E-11		0.0466	[0.033-0.061] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q13.5	SERPINH1	rs606452-A	0.1447	6E-9	(EA)	0.0315	[0.021-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q13.5	SERPINH1	rs606452-A	0.1447	2E-6	(EA, women)	0.0335	[0.02-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11q13.5	SERPINH1	rs606452-A	0.1447	3E-8	(EA)	0.0344	[0.022-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	11q13.5	SERPINH1	rs606452-A	0.1416	1E-6	(EA,women)	0.0384	[0.023-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q13.5	SERPINH1	rs606452-?	0.1447	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	11q13.5	SERPINH1	rs606452-?	0.1447	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr11	75276177	75276178	rs606452	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q13.5	SERPINH1	rs606452-A	0.1457	1E-8	(EA)	0.0292	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1159	chr11	75276177	75276178	rs606452	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	11q13.5	SERPINH1	rs606452-A	0.47	1E-16		0.039	[0.027-0.051] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1159	chr11	75276177	75276178	rs606452	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	11q13.5	SERPINH1	rs606452-A	0.142	2E-23		0.043	[0.035-0.051] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1159	chr11	75276177	75276178	rs606452	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	11q13.5	SERPINH1	rs606452-C	0.64	2E-9		0.043	[0.023-0.063] unit decrease	Affymetrix [855034]	N
1159	chr11	75277627	75277628	rs584961	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	11q13.5		rs584961-?	NR	1E-5		0.01	[-0.1468-0.1668] unit decrease	Illumina [5082878] (imputed)	N
1159	chr11	75277627	75277628	rs584961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q13.5	NR	rs584961-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1159	chr11	75279289	75279290	rs645935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q13.5	SERPINH1	rs645935-T	NR	3E-14		0.030915	[0.023-0.039] unit increase	Affymetrix [321016] (imputed)	N
1159	chr11	75279289	75279290	rs645935	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q13.5	SERPINH1	rs645935-?	NR	1E-29		0.032379664	[0.027-0.038] unit decrease	Illumina [27896057] (imputed)	N
1159	chr11	75282051	75282052	rs634552	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	11q13.5	SERPINH1	rs634552-T	0.363	4E-15	(AA)	0.055	[0.041-0.069] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1159	chr11	75282051	75282052	rs634552	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	11q13.5	SERPINH1	rs634552-T		3E-34				Affymetrix, Illumina [17972582] (imputed)	N
1159	chr11	75282051	75282052	rs634552	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	11q13.5	SERPINH1	rs634552-T	0.362	2E-10	(AA)	0.055	[0.037-0.073] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1159	chr11	75282051	75282052	rs634552	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	11q13.5	SERPINH1	rs634552-T	0.364	2E-6	(AA)	0.054	[0.032-0.076] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1159	chr11	75282051	75282052	rs634552	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	11q13.5	NR	rs634552-?	NR	7E-15		0.04756233	[0.036-0.06] unit decrease	Illumina [34656550] (imputed)	N
1159	chr11	75282051	75282052	rs634552	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	11q13.5	SERPINH1	rs634552-G	0.1365	2E-8		0.005503326	[0.0036-0.0074] m decrease	Illumina [24111857] (imputed)	N
1159	chr11	75282051	75282052	rs634552	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q13.5	SERPINH1	rs634552-T	0.14	4E-13		0.039	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1159	chr11	75283652	75283653	rs6704	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q13.5	SERPINH1	rs6704-?	NR	3E-12		0.0374783	[0.027-0.048] unit increase	Illumina [4804024] (imputed)	N
1159	chr11	75284333	75284334	rs659418	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q13.5	SERPINH1	rs659418-T	0.846	4E-9		0.053	[0.035-0.071] unit increase	Affymetrix [7947838] (imputed)	N
1159	chr11	75284333	75284334	rs659418	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q13.5	SERPINH1	rs659418-T	0.8665	3E-10		0.0593	[0.041-0.078] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1160	chr11	75438923	75438924	rs12284314	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	11q13.5	MOGAT2	rs12284314-C	0.21	5E-6		1.39	[1.21-1.60] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1160	chr11	75445179	75445180	rs72995678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q13.5		rs72995678-C	NR	1E-11		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1160	chr11	75445299	75445300	rs11236508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q13.5	NR	rs11236508-A	NR	3E-9		0.024	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1160	chr11	75447181	75447182	rs11236509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q13.5		rs11236509-T	NR	4E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1160	chr11	75448803	75448804	rs10899106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q13.5		rs10899106-A	0.828634	3E-8		0.0306075	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11q13.5		rs673335-T	0.840248	5E-13		0.038212	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q13.5		rs673335-T	0.840248	1E-29		0.0611093	[0.051-0.072] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs673335-T	0.840248	7E-37		0.0684035	[0.058-0.079] unit increase	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q13.5		rs673335-T	0.840248	2E-26		0.056988	[0.046-0.067] unit increase	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.5		rs673335-T	0.840224	2E-9		0.0339783	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
1160	chr11	75450575	75450576	rs673335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q13.5	RN7SL786P	rs673335-C	0.158652	2E-11		0.020275677	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr11	75450575	75450576	rs673335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q13.5		rs673335-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1160	chr11	75451186	75451187	rs11821808	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+OAc]1-/Phosphatidylserine_44:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q13.5		rs11821808-T	NR	2E-10		0.11336	[0.078-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	4E-40		0.0697759	[0.059-0.08] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	2E-10		0.0357299	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	2E-27		0.0595834	[0.049-0.07] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	4E-43		0.0729299	[0.063-0.083] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	9E-37		0.0648952	[0.055-0.075] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	4E-37		0.0665242	[0.056-0.077] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	2E-33		0.0632165	[0.053-0.073] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	4E-34		0.0635941	[0.053-0.074] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q13.5		rs559355-A	0.842021	3E-34		0.0634255	[0.053-0.074] unit increase	NR [11722792] (imputed)	N
1160	chr11	75451280	75451281	rs559355	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.5	MOGAT2	rs559355-A	0.842703	8E-41		0.0349543	[0.03-0.04] unit increase	Affymetrix [NR] (imputed)	N
1160	chr11	75451280	75451281	rs559355	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q13.5	MOGAT2	rs559355-A	0.842654	8E-62		0.0446533	[0.039-0.05] unit increase	Affymetrix [NR] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-10		0.0343937	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-14		0.0376894	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-9		0.0324741	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-32		0.0600661	[0.05-0.07] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	9E-10		0.0334903	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	2E-29		0.0600003	[0.05-0.07] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840119	2E-8		0.0294061	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	6E-20		0.0505297	[0.04-0.061] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-28		0.0632301	[0.052-0.074] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-17		0.0426098	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	2E-24		0.0516479	[0.042-0.062] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-13		0.0373628	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-34		0.0632284	[0.053-0.073] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	2E-24		0.051241	[0.041-0.061] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	2E-11		0.0331836	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	8E-32		0.0624621	[0.052-0.073] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-14		0.0404125	[0.03-0.051] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	7E-28		0.0603936	[0.05-0.071] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-9		0.0296325	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	7E-13		0.0393487	[0.029-0.05] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-23		0.0510849	[0.041-0.061] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	5E-11		0.0351083	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	1E-19		0.0498295	[0.039-0.061] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	7E-10		0.0307882	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q13.5		rs144023941-A	0.840096	3E-11		0.03639	[0.026-0.047] unit increase	NR [11722792] (imputed)	N
1160	chr11	75452486	75452486	rs144023941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q13.5		rs144023941-ACTC	NR	4E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1160	chr11	75452517	75452518	rs643884	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q13.5	MOGAT2, DGAT2	rs643884-T	0.84	8E-9		5.77	z-score increase	Affymetrix [4311822] (imputed)	N
1160	chr11	75452517	75452518	rs643884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.5	NR	rs643884-C	0.196176	3E-19				Affymetrix, Illumina [24653286] (imputed)	N
1160	chr11	75453783	75453783	rs151224429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.5		rs151224429-A	0.906631	7E-9		0.0410867	[0.027-0.055] unit decrease	NR [11722792] (imputed)	N
1160	chr11	75453783	75453783	rs151224429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q13.5		rs151224429-A	0.906631	9E-12		0.0484189	[0.034-0.062] unit increase	NR [11722792] (imputed)	N
1160	chr11	75453876	75453877	rs1219550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q13.5		rs1219550-C	NR	5E-37		0.0336	[0.029-0.039] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1160	chr11	75454877	75454878	rs498936	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q13.5		rs498936-T	0.841655	2E-28		0.0591814	[0.049-0.07] unit increase	NR [11722792] (imputed)	N
1160	chr11	75454877	75454878	rs498936	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q13.5	MOGAT2	rs498936-T	0.842349	2E-16		0.00246929	[0.0018-0.0031] unit increase	Affymetrix [13995440] (imputed)	N
1160	chr11	75454877	75454878	rs498936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q13.5	NR	rs498936-A	0.160693	2E-18		0.021848	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1160	chr11	75454877	75454878	rs498936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q13.5	NR	rs498936-A	0.16057	2E-15		0.019902	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1160	chr11	75455020	75455021	rs499974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs499974-C	0.842513	2E-11		0.0367427	[0.026-0.047] unit increase	NR [11722792] (imputed)	N
1160	chr11	75455020	75455021	rs499974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q13.5		rs499974-A	NR	3E-13		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1160	chr11	75455020	75455021	rs499974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q13.5		rs499974-A	NR	9E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1160	chr11	75455020	75455021	rs499974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q13.5	RN7SL786P	rs499974-A	0.156567	2E-13		0.022436751	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr11	75455020	75455021	rs499974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q13.5	RN7SL786P	rs499974-A	0.156546	2E-11		0.020466927	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr11	75455020	75455021	rs499974	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.5	NR	rs499974-C	NR	3E-8		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1160	chr11	75455020	75455021	rs499974	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.5	NR	rs499974-C	0.832	6E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1160	chr11	75455020	75455021	rs499974	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q13.5	MOGAT2, DGAT2	rs499974-A	0.175	5E-11	(Trans-ethnic initial)	0.0263	[0.018-0.035] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1160	chr11	75455020	75455021	rs499974	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q13.5	MOGAT2, DGAT2	rs499974-A	0.19	1E-8		0.026	[NR] unit decrease	NR [NR] (imputed)	N
1160	chr11	75455308	75455309	rs600626	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q13.5		rs600626-A	0.842512	3E-30		0.0620443	[0.051-0.073] unit increase	NR [11722792] (imputed)	N
1160	chr11	75455308	75455309	rs600626	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	11q13.5	MOGAT2	rs600626-A	0.827	5E-6		0.07	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1160	chr11	75455372	75455373	rs600518	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q13.5	MOGAT2, LOC283214	rs600518-?		5E-11		0.032	[0.022-0.042] unit decrease	Illumina [31500000] (imputed)	N
1160	chr11	75455372	75455373	rs600518	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.5	NR	rs600518-A	NR	2E-8		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1160	chr11	75455372	75455373	rs600518	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q13.5	NR	rs600518-A	0.832	6E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1160	chr11	75456133	75456134	rs531117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.5	NR	rs531117-T	0.196628	7E-15				Affymetrix, Illumina [24332387] (imputed)	N
1160	chr11	75456133	75456134	rs531117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.5	NR	rs531117-T	0.195682	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
1160	chr11	75459864	75459865	rs10793129	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.5	NR	rs10793129-A	0.090078	2E-12		0.024492	[0.018-0.031] unit increase	Affymetrix [16668957] (imputed)	N
1160	chr11	75460668	75460669	rs11236520	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	11q13.5	MOGAT2, LOC283214	rs11236520-?	NR	8E-9		0.04143	[0.027-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1160	chr11	75464343	75464344	rs11236524	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.5	NR	rs11236524-C	0.2408	1E-8		0.0363	[0.024-0.049] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1160	chr11	75465907	75465909	rs201068436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11q13.5		rs201068436-C	NR	3E-18		0.0343	[0.027-0.042] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1160	chr11	75469309	75469310	rs11236527	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q13.5	MOGAT2	rs11236527-?	NR	6E-6	(LPC 20:3)	0.25729525	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q13.5	NR	rs1806895-C	0.094728	3E-16		0.026903	[0.02-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.5	LOC283214	rs1806895-C	NR	6E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.5	LOC283214	rs1806895-C	NR	3E-21				Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q13.5	LOC283214	rs1806895-C	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.5	LOC283214	rs1806895-C	NR	5E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.5	LOC283214	rs1806895-C	NR	4E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q13.5	LOC283214	rs1806895-C	NR	2E-24				Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	4E-6	(EA)	0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	4E-10	(Asian)	0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	2E-18		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	6E-7	(EA)	0.01315	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	3E-17		0.0104	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q13.5	LOC283214	rs1806895-C	NR	1E-9	(Asian)	0.009346	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1160	chr11	75473714	75473715	rs1806895	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	11q13.5	NR	rs1806895-T	0.8558	1E-15				Affymetrix, Illumina [at least 2500000] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	2E-9		0.0418751	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	8E-20		0.0616077	[0.048-0.075] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	6E-27		0.0761129	[0.062-0.09] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	2E-9		0.0419445	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	5E-13		0.0507427	[0.037-0.064] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	4E-24		0.0675987	[0.055-0.081] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	2E-8		0.0389597	[0.025-0.052] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	9E-22		0.0661452	[0.053-0.08] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	1E-10		0.0442361	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	2E-33		0.0847823	[0.071-0.099] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	7E-28		0.0734741	[0.06-0.087] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	1E-24		0.0681989	[0.055-0.081] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905938	3E-14		0.0527256	[0.039-0.066] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	1E-20		0.0648916	[0.051-0.079] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	3E-19		0.0637487	[0.05-0.078] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	3E-18		0.0619968	[0.048-0.076] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q13.5		rs72997616-C	0.905896	5E-20		0.0650465	[0.051-0.079] unit increase	NR [11722792] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q13.5		rs72997616-A	NR	3E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q13.5	CTD-2530H12.1, DGAT2	rs72997616-A	0.0938949999999999	6E-10		0.023998419	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr11	75474194	75474195	rs72997616	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.5	CTD-2530H12.1	rs72997616-A	0.1232	4E-8		0.0243	[0.016-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1160	chr11	75481663	75481664	rs10899118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11q13.5		rs10899118-C	0.349473	1E-10		0.0318561	[0.022-0.042] unit decrease	Illumina [13465896] (imputed)	N
1160	chr11	75484928	75484929	rs11823869	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q13.5	NR	rs11823869-C	0.91	2E-8		0.018	[0.012-0.024] unit decrease	NR [NR]	N
1160	chr11	75488053	75488054	rs72997623	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.5		rs72997623-C	0.915338	6E-16		0.029	[0.021-0.037] unit increase	NR [7250403] (imputed)	N
1161	chr11	75509316	75509317	rs150303834	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q13.5		rs150303834-?	NR	6E-9		0.246314	[0.16-0.33] unit decrease	NR [9800000] (imputed)	N
1161	chr11	75511571	75511572	rs3060	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.5		rs3060-?	NR	2E-14		0.027754	[0.021-0.035] unit increase	NR [6912294] (imputed)	N
1161	chr11	75517331	75517332	rs10899125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q13.5		rs10899125-G	NR	4E-8		0.0226	[0.015-0.031] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	4E-11		0.0271	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	4E-16		0.0334	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	3E-22		0.0415	[0.033-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	1E-10		0.0285	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	2E-9		0.0245	[0.016-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr11	75526480	75526481	rs7118567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q13.5	NR	rs7118567-A	NR	1E-36		0.0542	[0.046-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr11	75526481	75526482	rs7118569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs7118569-C	0.909737	7E-10		0.0422148	[0.029-0.056] unit increase	NR [11722792] (imputed)	N
1161	chr11	75526481	75526482	rs7118569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11q13.5		rs7118569-C	0.909782	1E-10		0.0456634	[0.032-0.06] unit increase	NR [11722792] (imputed)	N
1161	chr11	75526481	75526482	rs7118569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	11q13.5		rs7118569-C	0.909782	4E-12		0.0482089	[0.035-0.062] unit decrease	NR [11722792] (imputed)	N
1161	chr11	75531694	75531695	rs10899133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q13.5		rs10899133-C	0.894497	5E-12		0.0407718	[0.029-0.052] unit increase	NR [11722792] (imputed)	N
1161	chr11	75531694	75531695	rs10899133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q13.5		rs10899133-C	0.894497	2E-9		0.0360225	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
1161	chr11	75531694	75531695	rs10899133	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11q13.5	UVRAG	rs10899133-T		3E-9		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1161	chr11	75531694	75531695	rs10899133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	11q13.5	UVRAG	rs10899133-T	0.1063	4E-10		0.03597418	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1161	chr11	75546425	75546426	rs12224062	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+OAc]1-/Phosphatidylserine_44:6_[M-H]1- levels	13,814 British ancestry individuals	NA	11q13.5		rs12224062-G	NR	2E-10		0.119649	[0.083-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1161	chr11	75550908	75550909	rs72997672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q13.5	UVRAG	rs72997672-T	0.065704	5E-11		0.03202689	[0.022-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1161	chr11	75552579	75552580	rs34696509	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q13.5	UVRAG	rs34696509-?	0.2128	2E-13		0.0323	[0.024-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1161	chr11	75569092	75569093	rs12280456	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q13.5	NR	rs12280456-T	0.91208	7E-9		0.0213036	[0.014-0.029] unit increase	NR [NR]	N
1162	chr11	75683894	75683895	rs368167310	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	11q13.5	UVRAG	rs368167310-T	NR	5E-7		0.58	[1.54-1.92]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1163	chr11	75807529	75807530	rs75656082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q13.5	NR	rs75656082-T	NR	3E-11		0.0605	[0.043-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1163	chr11	75858694	75858695	rs621457	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Thumb osteoarthritis severity (hand Klsum)	2,071 Dutch ancestry individuals	1,203 individuals	11q13.5	UVRAG, WNT11	rs621457-A	0.52	3E-7		0.17	[0.11-0.23] unit decrease	Illumina [10500000] (imputed)	N
1163	chr11	75882889	75882890	rs60995418	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	11q13.5		rs60995418-G	0.58	3E-6		0.09	[0.051-0.129] unit decrease	Illumina [5305352] (imputed)	N
1163	chr11	75885248	75885249	rs7945530	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	11q13.5		rs7945530-?	NR	5E-6		0.09	[0.049-0.131] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1164	chr11	75890906	75890907	rs689196	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q13.5	NR	rs689196-?		7E-7				Illumina [4322238] (imputed)	N
1164	chr11	75891181	75891182	rs75130836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11q13.5		rs75130836-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1164	chr11	75891181	75891182	rs75130836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.5		rs75130836-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1164	chr11	75897373	75897374	rs17749202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q13.5	WNT11	rs17749202-C	0.334704	4E-11		0.01584494	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr11	75897373	75897374	rs17749202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q13.5	NR	rs17749202-C	0.332599	1E-10		0.012877	[0.009-0.0168] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1164	chr11	75904136	75904137	rs882151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q13.5		rs882151-A	NR	5E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1164	chr11	75909618	75909619	rs4944092	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	11q13.5	WNT11	rs4944092-G	0.32	3E-8		1.19	[0.77-1.61] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1164	chr11	75910912	75910913	rs10400322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q13.5	WNT11	rs10400322-T	0.32507	4E-9		0.014154754	[0.0094-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr11	75915138	75915139	rs94111	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11q13.5	WNT11	rs94111-G	0.6388	2E-10		0.4198	[0.29-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1164	chr11	75922637	75922638	rs11821220	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q13.5	NR	rs11821220-A	0.01045	1E-10	(EIF4A2)	0.05359	NR unit increase	Illumina [1671387] (imputed)	N
1164	chr11	75924545	75924546	rs56078032	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	11q13.5	WNT11, THAP12	rs56078032-T	0.1205	5E-6		0.2879	[0.16-0.41] unit decrease	NR [NR] (imputed)	N
1164	chr11	75924545	75924546	rs56078032	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	11q13.5	WNT11, THAP12	rs56078032-T	NR	8E-6		0.2849	[0.16-0.41] unit decrease	NR [NR] (imputed)	N
1164	chr11	75931290	75931291	rs652673	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	11q13.5	WNT11	rs652673-C	0.22	4E-8		0.8	[0.51-1.09] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1164	chr11	75980524	75980525	rs2846072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q13.5		rs2846072-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1164	chr11	75980709	75980710	rs2846071	34482816	Xie C	2021-09-06	BMC Genom Data	Genome-wide association study identifies new loci associated with noise-induced tinnitus in Chinese populations.	Tinnitus in noise exposure	65 Chinese ancestry male cases, 233 Chinese ancestry male controls	34 Chinese ancestry male cases, 379 Chinese ancestry male controls	11q13.5		rs2846071-T	NR	5E-6		2.14	[1.96-3.4]	Illumina [3830431] (imputed)	N
1165	chr11	76034700	76034701	rs2213020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs2213020-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76034700	76034701	rs2213020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs2213020-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76035806	76035807	rs2618070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q13.5	NR	rs2618070-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76035806	76035807	rs2618070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs2618070-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76035806	76035807	rs2618070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs2618070-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76057945	76057946	rs55684690	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q13.5	C11orf30, GUCY2EP, LOC100506127, LRRC32, PRKRIR, UVRAG, WNT11	rs55684690-T	0.040446	8E-29		1.192698	[1.16-1.22]	Affymetrix [8274727] (imputed)	N
1165	chr11	76073207	76073208	rs61892804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs61892804-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76084693	76084694	rs2851156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.5		rs2851156-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1165	chr11	76112084	76112085	rs4945082	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	11q13.5		rs4945082-A	NR	5E-6	(GLM)	4.651	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1165	chr11	76114020	76114021	rs12420744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs12420744-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76116984	76116985	rs2017759	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs2017759-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		4E-8		0.315	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		2E-7	(EA)	0.327	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		4E-9		0.235	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		7E-11		0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		2E-10	(EA)	0.268	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76125329	76125330	rs7927515	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q13.5	PRKRIR, C11orf30	rs7927515-C		3E-8		0.149	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1165	chr11	76126583	76126584	rs74991297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q13.5		rs74991297-T	NR	6E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1165	chr11	76126583	76126584	rs74991297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q13.5		rs74991297-T	NR	5E-9		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1165	chr11	76126583	76126583	rs765847064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q13.5	NR	rs765847064-TC	0.35624	2E-10		0.0054886	[0.0038-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1165	chr11	76126583	76126583	rs765847064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q13.5	NR	rs765847064-TC	0.35624	2E-10		0.00631371	[0.0044-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
1165	chr11	76127213	76127214	rs10160382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q13.5		rs10160382-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1165	chr11	76144666	76144667	rs139629925	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	11q13.5	RP11-111M22.2, C11orf30, LRRC32	rs139629925-G	0.0121	6E-6		0.1347	NR unit increase	NR [NR] (imputed)	N
1166	chr11	76156972	76156973	rs61894507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.5	Intergenic	rs61894507-A	0.321	4E-8	(MTAG)	0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1166	chr11	76173947	76173948	rs72944758	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs72944758-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1166	chr11	76198560	76198561	rs7106446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs7106446-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1166	chr11	76230356	76230357	rs2513505	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q13.5	NR	rs2513505-C	0.4068	4E-10		0.024	[0.017-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	11q13.5	EMSY	rs61894547-T	0.04	5E-15		1.79	[1.55-2.07]	Illumina [11310926] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	11q13.5	EMSY	rs61894547-T	0.04	4E-13		1.92	[1.61-2.28]	Illumina [11310926] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.5	C11orf30	rs61894547-T	0.050872	2E-18		0.04571351	[0.036-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.5	C11orf30	rs61894547-T	0.050883	2E-20		0.048087638	[0.038-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11q13.5	EMSY, LRRC32, LOC100506127, GUCY2EP, THAP12, TSKU	rs61894547-T	0.05169	4E-35		1.18535	[1.15-1.22]	Affymetrix [32463443] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs61894547-?	NR	6E-44				Affymetrix [~ 8270000] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	11q13.5	EMSY, THAP12, LRRC32	rs61894547-T	0.052	2E-39		1.463	[1.382-1.548]	Affymetrix [10894596] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	11q13.5	EMSY, THAP12, LRRC32	rs61894547-T	0.052	4E-15		2.227	[1.67-2.78] unit decrease	Affymetrix [10894596] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q13.5	C11orf30	rs61894547-T	0.0505	3E-23		0.08175358	[0.066-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q13.5	C11orf30	rs61894547-T	0.0505	4E-21		0.07789902	[0.062-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q13.5	C11orf30	rs61894547-T	0.0505	7E-26		0.08653301	[0.07-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
1166	chr11	76248629	76248630	rs61894547	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	11q13.5	C11orf30	rs61894547-T	0.043	4E-11		2.439	[2.17-2.7]	Illumina [~ 2300000] (imputed)	N
1166	chr11	76257214	76257215	rs3753051	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	11q13.5	C11orf30	rs3753051-?		3E-9				Illumina [5041948] (imputed)	N
1166	chr11	76260543	76260544	rs11290954	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q13.5	C11orf30	rs11290954-AC	0.68	7E-13		1.06	[1.05-1.08]	Illumina [20370935] (imputed)	N
1166	chr11	76266171	76266172	rs2155220	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q13.5	C11orf30	rs2155220-C	0.562048	3E-8		0.0105782	[0.0068-0.0143] unit increase	Affymetrix [NR] (imputed)	N
1166	chr11	76267330	76267331	rs56159348	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q13.5	NR	rs56159348-T	NR	4E-14		1.057	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1166	chr11	76267476	76267477	rs55904328	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q13.5	NR	rs55904328-?	NR	6E-8	(AA)	0.4203	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1166	chr11	76267766	76267767	rs60748394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs60748394-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1166	chr11	76270682	76270683	rs7130588	23886662	Weidinger S	2013-07-25	Hum Mol Genet	A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.	Atopic dermatitis	1563 European ancestry cases, 4,054 European ancestry controls	2,286 European ancestry cases, 3,160 European ancestry controls	11q13.5	LRRC32, C11orf30	rs7130588-G	NR	4E-13		1.29	[1.2-1.38]	Illumina [2406139] (imputed)	N
1166	chr11	76270682	76270683	rs7130588	21907864	Ferreira MA	2011-09-10	Lancet	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	11q13.5	LRRC32	rs7130588-G	0.34	2E-8		1.09	[1.06-1.13]	Illumina [NR] (imputed)	N
1166	chr11	76272638	76272639	rs1892954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs1892954-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1166	chr11	76281592	76281593	rs2212434	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	11q13.5		rs2212434-?	NR	2E-6		0.041	NR unit increase	NR [5896510] (imputed)	N
1166	chr11	76281592	76281593	rs2212434	29051540	Marenholz I	2017-10-20	Nat Commun	Genome-wide association study identifies the SERPINB gene cluster as a susceptibility locus for food allergy.	Food allergy	497 European ancestry cases, 2,387 European ancestry controls	1,050 European ancestry cases, 2,510 European ancestry controls	11q13.5	C11orf30, LRRC32	rs2212434-T	0.459	9E-11		1.29	(discovery)	Illumina [5405832] (imputed)	N
1166	chr11	76281592	76281593	rs2212434	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q13.5	C11orf30, LRRC32	rs2212434-T	0.45	5E-13	(EA, fixed effects)	1.09	[1.07-1.12]	Illumina [15539996] (imputed)	N
1166	chr11	76281592	76281593	rs2212434	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	11q13.5	C11orf30	rs2212434-?	NR	3E-12	(Atopic dermatitis)	1.29	[1.21-1.39]	Affymetrix, Illumina [~ 5200000]	N
1167	chr11	76285421	76285422	rs6592651	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs6592651-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76292574	76292575	rs7110818	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	11q13.5		rs7110818-?	NR	2E-14		0.064	NR unit increase	NR [5890016] (imputed)	N
1167	chr11	76292574	76292575	rs7110818	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q13.5	C11ORF30, LRRC32	rs7110818-T	NR	5E-7	(GO:0007267|BP|03|cell-cell signaling)	5.027987	Z-score decrease	Illumina [8100000] (imputed)	N
1167	chr11	76292574	76292575	rs7110818	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	11q13.5	C11orf30	rs7110818-A	0.4392	3E-16		1.28	[1.21-1.36]	Illumina [128830]	N
1167	chr11	76293069	76293070	rs7114362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	11q13.5		rs7114362-T	0.419385	2E-11		0.0299326	[0.021-0.039] unit increase	Illumina [13470073] (imputed)	N
1167	chr11	76293069	76293070	rs7114362	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	11q13.5	EMSY, LRRC32	rs7114362-?	NR	1E-8		0.03448	[0.023-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1167	chr11	76293526	76293527	rs7936070	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11q13.5	EMSY, LRRC32, GUCY2EP, LOC100506127, TSKU, LOC101928837	rs7936070-T	0.47685	2E-45		1.0932	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
1167	chr11	76293526	76293527	rs7936070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs7936070-?	NR	6E-22				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76293526	76293527	rs7936070	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	11q13.5	C11orf30	rs7936070-T	0.42	2E-14		1.19	[1.14-1.25]	Affymetrix, Illumina [16531985] (imputed)	N
1167	chr11	76293526	76293527	rs7936070	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	11q13.5	C11orf30	rs7936070-?	NR	4E-22		1.1	[1.08-1.13]	Affymetrix [74888535] (imputed)	N
1167	chr11	76293526	76293527	rs7936070	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	11q13.5	C11orf30, LOC101928813	rs7936070-?	NR	6E-11	(including GERA cohort)			Illumina [7830195] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	11q13.5		rs7936312-T	NR	8E-22		0.0894	[0.071-0.108] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	11q13.5		rs7936312-T	NR	1E-18		0.0989	[0.077-0.121] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	11q13.5		rs7936312-T	NR	1E-28		0.1002	[0.083-0.118] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	11q13.5		rs7936312-G	0.522	4E-37				Affymetrix [10369434] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11q13.5	EMSY, LRRC32	rs7936312-T	0.476762174379229	1E-37		0.08383254	[0.071-0.097] unit increase	Affymetrix [35186738] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	11q13.5	NR	rs7936312-G	0.52	7E-11		0.9	[NR]	NR [8546065] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs7936312-?	NR	5E-56				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q13.5	C11orf30, LOC100506127, PRKRIR	rs7936312-T	0.476493	1E-48		1.0962532	[1.08-1.11]	Affymetrix [8274727] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q13.5	NR	rs7936312-T	0.4769	4E-70		1.111	[1.098-1.123]	Affymetrix [15688218] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	11q13.5	LRRC32, EMSY	rs7936312-T	0.4768	9E-21		1.171	[1.134-1.208]	Affymetrix [15688218] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11q13.5	C11orf30, LRRC32, EMSY	rs7936312-T	0.4769	1E-59				Affymetrix [15688218] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q13.5	NR	rs7936312-T	0.4769	1E-77		1.107	[1.095-1.118]	Affymetrix [15688218] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	11q13.5	EMSY, LRRC32	rs7936312-T	0.477	5E-33		1.194	[1.160-1.230]	Affymetrix [10894596] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	11q13.5	EMSY, LRRC32	rs7936312-T	0.477	4E-9		1.06	[1.040-1.081]	Affymetrix [10894596] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	11q13.5	C11orf30	rs7936312-T	0.477022	1E-18		0.0988845	[0.077-0.121] unit increase	Affymetrix [7288503] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	11q13.5	C11orf30	rs7936312-T	0.479902	1E-28		0.10017879	[0.083-0.118] unit increase	Affymetrix [7288503] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	11q13.5	WNT11, LRRC32	rs7936312-T	0.471	6E-19		1.093	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	11q13.5	WNT11, LRRC32	rs7936312-?	NR	3E-31		1.081	[1.07-1.09]	Affymetrix [9000000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs7936312-T	NR	3E-64		1.122	[1.11-1.14]	Affymetrix [9000000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11q13.5		rs7936312-?	NR	1E-54				NR [~ 8900000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q13.5		rs7936312-?	NR	2E-97				NR [~ 8900000] (imputed)	N
1167	chr11	76293725	76293726	rs7936312	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	11q13.5	C11orf30	rs7936312-T	0.4742	6E-24		1.17	[1.13-1.20]	Affymetrix [33771858] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	11q13.5		rs7936323-A	0.45	8E-10				Affymetrix, Illumina [NR] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.5		rs7936323-A	0.477644	1E-60		0.03742386	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.5		rs7936323-A	0.477643	6E-58		0.036539055	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	11q13.5	NR	rs7936323-G	0.506	7E-27		0.045	[0.037-0.053] unit increase	NR [7647814] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q13.5	C11orf30, LRRC32	rs7936323-A	0.47	7E-86				NR [> 9500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q13.5	C11orf30/LRRC32	rs7936323-A	0.472974	6E-74		1.1152614	[1.10223088865903-1.12844600435319]	NR [9572556] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q13.5	NR	rs7936323-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q13.5		rs7936323-?	NR	2E-75				NR [~ 8900000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	11q13.5	LRRC32, C11orf30	rs7936323-A	0.4806	7E-24		1.08	[1.06-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs7936323-A	0.46	2E-63		1.088	[1.08-1.1]	Affymetrix, Illumina [8307659] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q13.5	intergenic	rs7936323-A	0.4767	3E-38		0.04615223	[0.039-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q13.5	intergenic	rs7936323-A	0.4768	4E-35		0.04423138	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q13.5	intergenic	rs7936323-A	0.4768	2E-41		0.04805425	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q13.5	intergenic	rs7936323-A	0.4768	5E-38		0.04615187	[0.039-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q13.5	intergenic	rs7936323-A	0.4768	2E-41		0.04808987	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	11q13.5	C11orf30, LRRC32	rs7936323-?	NR	1E-16		1.0845987	[1.06-1.1]	Illumina [13747813] (imputed)	N
1167	chr11	76293757	76293758	rs7936323	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	11q13.5	C11orf30, LRRC32	rs7936323-?	NR	1E-14		1.0604454	[1.04-1.08]	Illumina [12845910] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11q13.5		rs7936434-C	0.4688	2E-31		1.14		Affymetrix, Illumina [9397031] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	11q13.5		rs7936434-C	NR	6E-9		0.1157	[0.077-0.155] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	11q13.5	EMSY	rs7936434-C	0.464277	4E-8		0.07692268	[0.05-0.104] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q13.5	NR	rs7936434-C	0.461622	2E-114				Affymetrix, Illumina [19872809] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q13.5	NR	rs7936434-C	0.477743	4E-104		0.043013	[0.039-0.047] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	11q13.5	C11orf30, LOC101928813	rs7936434-?		3E-7				Illumina [7830195] (imputed)	N
1167	chr11	76293804	76293805	rs7936434	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	11q13.5	C11orf30, LOC101928813	rs7936434-?	NR	8E-11	(excluding GERA cohort)			Illumina [7830195] (imputed)	N
1167	chr11	76295597	76295598	rs11236791	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	11q13.5		rs11236791-?	NR	2E-27		1.11	[1.09-1.13]	Illumina [5170515] (imputed)	N
1167	chr11	76295597	76295598	rs11236791	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	11q13.5	WNT11, LRRC32	rs11236791-A	0.469	2E-18		0.038	[0.03-0.046] unit decrease	NR [NR] (imputed)	N
1167	chr11	76295597	76295598	rs11236791	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	11q13.5	WNT11, LRRC32	rs11236791-A	0.469	4E-28		0.046	[0.038-0.054] unit decrease	NR [7647814] (imputed)	N
1167	chr11	76296670	76296671	rs10160518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	11q13.5		rs10160518-G	NR	2E-14		0.0729	[0.054-0.092] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1167	chr11	76296670	76296671	rs10160518	25817017	Carmona FD	2015-03-26	Am J Hum Genet	A large-scale genetic analysis reveals a strong contribution of the HLA class II region to giant cell arteritis susceptibility.	Giant cell arteritis	1,651 European ancestry cases, 15,306 European ancestry controls	NA	11q13.5	LRRC32	rs10160518-A	0.494	4E-6		1.2	[1.11-1.29]	Illumina [95416]	N
1167	chr11	76298632	76298632	rs397732374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q13.5		rs397732374-GT	NR	3E-10		0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q13.5		rs2155219-T	NR	3E-68		0.0286	[0.025-0.032] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	11q13.5	C11orf30, LRRC32	rs2155219-T	0.46	3E-15		0.11	[0.09-0.13] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q13.5	C11ORF30, LRRC32	rs2155219-T	NR	1E-7	(GO:0007267|BP|03|cell-cell signaling)	5.277366	Z-score decrease	Illumina [8100000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	11q13.5	C11orf30, LRRC32	rs2155219-T	0.487	2E-15		1.33	[1.24-1.43]	Affymetrix, Illumina [1633153] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.5	NR	rs2155219-A	0.4994	8E-21	(EA)	1.1254078	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.5	NR	rs2155219-A	0.4994	6E-46	(EA)	1.188493	[1.16-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	11q13.5	LRRC32, GARP	rs2155219-T	NR	4E-8		1.21		Illumina [1233578] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	11q13.5	LRRC32, C11orf30	rs2155219-A	0.51	4E-7		1.37	[NR]	Illumina [1468075]	N
1167	chr11	76299193	76299194	rs2155219	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	11q13.5	LRRC32, C11orf30	rs2155219-T	0.47	1E-18		1.18	[1.13-1.22]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	11q13.5	LRRC32, C11orf30	rs2155219-T	0.5146	2E-19		0.1081	[0.085-0.132] unit increase	Illumina [2400000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q13.5	intergenic	rs2155219-T	0.509	4E-36		1.151	[1.119-1.185]	Affymetrix, Illumina [1230000] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	11q13.5	LRRC32, C11orf30	rs2155219-T	0.47	1E-8		1.22	[1.14-1.31]	Affymetrix, Illumina [2217510] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	11q13.5	LRRC32, C11orf30	rs2155219-T	0.47	4E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [2217510] (imputed)	N
1167	chr11	76299193	76299194	rs2155219	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11q13.5	intergenic	rs2155219-T	0.5	5E-16		1.13	[1.08-1.17]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11q13.5		rs55646091-A	0.0461	1E-20		1.27		Affymetrix, Illumina [9397031] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	11q13.5	WNT11, LRRC32	rs55646091-A	0.056	3E-12		0.067	[0.047-0.087] unit decrease	NR [NR] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q13.5	NR	rs55646091-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs55646091-?	NR	7E-41				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs55646091-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q13.5	NR	rs55646091-A	0.04826	5E-32		1.173	[1.144-1.204]	Affymetrix [15688218] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11q13.5	NR	rs55646091-?	NR	2E-20	(conditional)			Affymetrix [15688218] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	11q13.5	WNT11, LRRC32	rs55646091-A	0.045	5E-17		1.205	[1.16-1.25]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11q13.5	WNT11, LRRC32	rs55646091-?	NR	6E-74		1.364	[1.33-1.4]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs55646091-A	NR	9E-42		1.24	[1.21-1.27]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs55646091-A	0.05	2E-40		1.179	[1.16-1.2]	Affymetrix, Illumina [8307659] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q13.5	RP11-672A2.7	rs55646091-A	0.0503	1E-24		0.08579939	[0.069-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76299430	76299431	rs55646091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q13.5	RP11-672A2.7	rs55646091-A	0.0503	2E-19		0.07599682	[0.06-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	11q13.5		rs11236797-A	NR	2E-29		0.0793	[0.066-0.093] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs11236797-?	NR	3E-47				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	11q13.5	LRRC32, EMSY	rs11236797-A	0.4505	5E-32		1.141	[1.117-1.165]	Affymetrix [15688218] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	11q13.5	C11orf30	rs11236797-A	0.453871	1E-13		0.09366611	[0.069-0.118] unit increase	Affymetrix [7288503] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	11q13.5	WNT11, LRRC32	rs11236797-A	0.445	7E-18		1.09	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11q13.5	WNT11, LRRC32	rs11236797-?	NR	1E-93		1.162	[1.15-1.18]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs11236797-A	NR	6E-62		1.12	[1.11-1.13]	Affymetrix [9000000] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11q13.5	Intergenic	rs11236797-?		5E-15				Illumina [9578670] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	11q13.5	Intergenic	rs11236797-?		7E-33				Illumina [9725440] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	11q13.5	Intergenic	rs11236797-?		9E-28				Illumina [9560910] (imputed)	N
1167	chr11	76299648	76299649	rs11236797	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q13.5	RP11-672A2.7	rs11236797-?	NR	3E-43	(subset analysis)			Illumina [130052]	N
1167	chr11	76299648	76299649	rs11236797	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q13.5	NR	rs11236797-?	NR	9E-52	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1167	chr11	76299844	76299851	rs34455012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11q13.5		rs34455012-C	NR	7E-19		0.1326	[0.1-0.16] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1167	chr11	76299844	76299851	rs34455012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11q13.5		rs34455012-C	0.416870188	3E-9		0.14712653	[0.098-0.196] unit increase	Illumina [13428180] (imputed)	N
1167	chr11	76299844	76299851	rs34455012	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	11q13.5	NR	rs34455012-cccagtat	0.6075	2E-22		0.87	[0.85-0.89]	Affymetrix, Illumina [16201029] (imputed)	N
1167	chr11	76301315	76301316	rs7927894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q13.5	RP11-672A2.7	rs7927894-T	0.39246	1E-10		0.014610953	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr11	76301315	76301316	rs7927894	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	11q13.5	EMSY, LRRC32	rs7927894-T	0.37	2E-14		1.1	[1.08-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1167	chr11	76301315	76301316	rs7927894	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q13.5	C11ORF30, LRRC32	rs7927894-T	NR	3E-6	(GO:0007267|BP|03|cell-cell signaling)	4.6556125	Z-score decrease	Illumina [8100000] (imputed)	N
1167	chr11	76301315	76301316	rs7927894	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q13.5	C11orf30	rs7927894-T	NR	3E-9	(EA, fixed effects)	1.08	[1.05-1.10]	Illumina [15539996] (imputed)	N
1167	chr11	76301315	76301316	rs7927894	19349984	Esparza-Gordillo J	2009-04-06	Nat Genet	A common variant on chromosome 11q13 is associated with atopic dermatitis.	Atopic dermatitis	939 European ancestry cases, 975 European ancestry controls, 1,097 European ancestry individuals from 270 families	2,637 European ancestry cases, 3,957 European ancestry controls	11q13.5	C11orf30	rs7927894-A	0.36	8E-10		1.22	[1.15-1.30]	Affymetrix [342303]	N
1167	chr11	76301315	76301316	rs7927894	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	11q13.5	C11orf30	rs7927894-T	0.39	1E-9		1.16	[NR]	Affymetrix, Illumina [635547] (imputed)	N
1167	chr11	76301374	76301375	rs7927997	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q13.5	C11ORF30, LRRC32	rs7927997-T	NR	3E-6	(GO:0007267|BP|03|cell-cell signaling)	4.6556125	Z-score decrease	Illumina [8100000] (imputed)	N
1167	chr11	76301374	76301375	rs7927997	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	11q13.5	C11orf30	rs7927997-T	0.389	6E-13		1.17	[1.12-1.22]	Affymetrix, Illumina [953241] (imputed)	N
1167	chr11	76302066	76302067	rs7931483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	11q13.5	NR	rs7931483-C	0.622145	1E-13		0.036604	[0.027-0.046] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1167	chr11	76311870	76311871	rs149082847	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11q13.5	Intergenic	rs149082847-G	NR	3E-7		0.0583962	[0.036-0.081] unit increase	Illumina [13520550] (imputed)	N
1167	chr11	76311870	76311871	rs149082847	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	11q13.5	C11orf30, LRRC32	rs149082847-G	0.085	2E-9		0.0476223	[0.032-0.063] unit decrease	Illumina [13520550] (imputed)	N
1167	chr11	76322251	76322252	rs11236806	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (headache)	1,758 Japanese ancestry female cases, 3,976 Japanese ancestry female controls	1,763 Japanese ancestry female cases, 3,851 Japanese ancestry female controls	11q13.5	NR	rs11236806-G	0.303168183	9E-6		0.138	[0.077-0.199] unit increase	Affymetrix [536506]	N
1167	chr11	76332209	76332210	rs11236809	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	11q13.5		rs11236809-?	NR	2E-9		1.21	[1.14-1.28]	Illumina [9900441] (imputed)	N
1167	chr11	76332209	76332210	rs11236809	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	11q13.5	C11orf30	rs11236809-G	0.25	3E-6		1.24	[NR]	Illumina [606164]	N
1167	chr11	76342149	76342150	rs12361883	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	11q13.5	LRRC32	rs12361883-T	0.1615	3E-6		0.1291	[0.075-0.183] unit decrease	Illumina [up to 38043574] (imputed)	N
1167	chr11	76343426	76343427	rs11236813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q13.5	RP11-672A2.5	rs11236813-C	0.100564	2E-12		0.026096394	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr11	76343426	76343427	rs11236813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q13.5	RP11-672A2.5	rs11236813-C	0.100546	3E-14		0.028119545	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr11	76343427	76343428	rs11236814	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q13.5	WNT11, LRRC32	rs11236814-A	0.91	4E-14		1.068	[1.05-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1167	chr11	76357843	76357844	rs4944113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q13.5		rs4944113-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1167	chr11	76366689	76366690	rs12718488	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs12718488-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76366689	76366690	rs12718488	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q13.5	LRRC32	rs12718488-G	0.346619	9E-9		1.038375	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1167	chr11	76369071	76369072	rs3197153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs3197153-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76372051	76372052	rs3740779	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	11q13.5	LRRC32	rs3740779-A	0.36	6E-6		0.73	[0.63-0.84]	Illumina [64973696] (imputed)	N
1167	chr11	76377818	76377819	rs6592657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q13.5	NR	rs6592657-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1167	chr11	76377818	76377819	rs6592657	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including 6-n-propylthiouracil) in obesity with metabolic syndrome	up to 372 individuals	NA	11q13.5	LRRC32	rs6592657-A	0.351	2E-6		1.549	[0.92-2.18] unit decrease	Illumina [622468]	N
1167	chr11	76378685	76378686	rs147482218	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	11q13.5	LRRC32	rs147482218-G	0.002	2E-9		3.487	NR	Affymetrix, Illumina [39127678] (imputed)	N
1167	chr11	76385727	76385728	rs60227687	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	11q13.5	LRRC32, GUCY2EP	rs60227687-A	0.058	3E-6		1.5	[1.26-1.77]	Affymetrix, Illumina [12148595] (imputed)	N
1168	chr11	76415208	76415209	rs10899257	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	11q13.5	GUCY2E	rs10899257-A	NR	5E-8		1.07		Affymetrix [14661600] (imputed)	N
1168	chr11	76419940	76419941	rs143942614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q13.5	NR	rs143942614-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1168	chr11	76441599	76441600	rs115148171	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.5	Intergenic	rs115148171-C	0.999	2E-6	(AA)	0.359	unit increase	Illumina [NR] (imputed)	N
1168	chr11	76465361	76465362	rs7942368	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	11q13.5	TSKU	rs7942368-C	0.79	1E-8		0.034	unit increase	NR [2324712] (imputed)	N
1168	chr11	76465361	76465362	rs7942368	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	11q13.5	NR	rs7942368-T	0.2423	9E-9		2.072	[1.609-2.668]	Illumina [274400]	N
1168	chr11	76465780	76465781	rs147269019	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	11q13.5	NR	rs147269019-C	0.011	9E-6		0.461	[0.26-0.66] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1168	chr11	76469092	76469093	rs1149596	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q13.5	NR	rs1149596-T	NR	1E-9		0.0198	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr11	76474826	76474827	rs10160769	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q13.5	TSKU	rs10160769-G	0.78263	5E-8		0.00918268	[0.0059-0.0125] unit increase	Affymetrix [12370749]	N
1168	chr11	76474826	76474827	rs10160769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q13.5		rs10160769-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1168	chr11	76476029	76476030	rs12282785	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q13.5	NA	rs12282785-A	0.2204	1E-11		0.0157	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1168	chr11	76476279	76476280	rs1440978	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q13.5	NR	rs1440978-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1168	chr11	76477243	76477244	rs10899279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q13.5	Intergenic	rs10899279-A	0.7706	2E-11	(MTAG)	0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr11	76480254	76480255	rs12290350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q13.5		rs12290350-T	NR	5E-9		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1168	chr11	76485215	76485216	rs1149605	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q13.5		rs1149605-?	NR	1E-16		0.0224664	[0.017-0.028] unit increase	NR [6912294] (imputed)	N
1168	chr11	76485215	76485216	rs1149605	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q13.5		rs1149605-T	0.829603	1E-17		0.022	[0.016-0.028] unit increase	NR [7250403] (imputed)	N
1168	chr11	76485215	76485216	rs1149605	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q13.5	NR	rs1149605-C	0.171453	7E-14		0.01928	[0.014-0.024] unit increase	Affymetrix [16668957] (imputed)	N
1168	chr11	76490057	76490058	rs1149606	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	11q13.5	TSKU	rs1149606-A	0.17	1E-10	(EA)	0.019	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1168	chr11	76498368	76498369	rs1149616	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	11q13.5	TSKU	rs1149616-T	0.17	2E-10		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1168	chr11	76501450	76501451	rs1837680	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q13.5	Intergenic	rs1837680-A	0.2234	2E-8	(MTAG)	0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr11	76504697	76504698	rs10899282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q13.5		rs10899282-A	0.2279	1E-16		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1168	chr11	76504697	76504698	rs10899282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q13.5	Intergenic	rs10899282-A	0.2279	2E-18	(MTAG)	0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr11	76505201	76505202	rs10899283	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q13.5	NR	rs10899283-C	0.7712	1E-8		0.0314	[0.021-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1168	chr11	76506571	76506572	rs1149620	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	11q13.5		rs1149620-A	0.4407	3E-9		0.96271294	[0.950712315-0.974865047]	Affymetrix, Illumina [NR] (imputed)	N
1168	chr11	76506571	76506572	rs1149620	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	11q13.5	NR	rs1149620-T	0.57	7E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1168	chr11	76517245	76517246	rs72939779	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	11q13.5		rs72939779-?	NR	5E-6		4.58	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1168	chr11	76517245	76517246	rs72939779	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	11q13.5		rs72939779-?	NR	9E-6		0.18	[0.1-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1168	chr11	76517245	76517246	rs72939779	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	11q13.5		rs72939779-?	NR	5E-6		4.56	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1168	chr11	76519101	76519102	rs1225124	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	11q13.5		rs1225124-?	NR	2E-8				NR [7857346] (imputed)	N
1168	chr11	76519101	76519102	rs1225124	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q13.5	NR	rs1225124-?	NR	6E-7		4.997	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1168	chr11	76541839	76541840	rs115816806	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	11q13.5	ACER3	rs115816806-?		5E-7	(model 2)	6.55	[3.17-13.53]	Illumina [29610185] (imputed)	N
1169	chr11	76560181	76560182	rs79467903	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	11q13.5	NR	rs79467903-?	NR	7E-6		0.1056	[0.06-0.151] unit increase	Illumina [at least 560000] (imputed)	N
1170	chr11	76747518	76747519	rs10899345	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	11q13.5	B3GNT6	rs10899345-G	0.3721	3E-6	(waist)	0.05745	NR unit increase	Affymetrix [305158]	N
1171	chr11	76823483	76823484	rs3781684	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11q13.5	CAPN5	rs3781684-?	0.1135	7E-6	(VRM)			Illumina [475971]	N
1171	chr11	76832445	76832446	rs77301713	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	11q13.5	NR	rs77301713-?	0.02	1E-7		2.22	[NR]	Illumina [1468075]	N
1171	chr11	76910765	76910766	rs7927472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q13.5	NR	rs7927472-T	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix [9000000] (imputed)	N
1171	chr11	76920116	76920117	rs138394018	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.5	MYO7A	rs138394018-G	0.997	4E-6	(AA)	0.162	unit increase	Illumina [NR] (imputed)	N
1171	chr11	76922580	76922581	rs55770291	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	11q13.5	MYO7A	rs55770291-A	0.0114	4E-6	(Ordinal I)	1.6201	[0.93-2.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1171	chr11	76922945	76922946	rs11237123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q13.5		rs11237123-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1171	chr11	76923016	76923017	rs3819170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q13.5		rs3819170-A	NR	2E-14		0.0215	[0.016-0.027] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1172	chr11	77005939	77005940	rs150923551	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.5	Intergenic	rs150923551-A	0.997	2E-6	(AA)	0.165	unit increase	Illumina [NR] (imputed)	N
1172	chr11	77012832	77012833	rs181563674	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.5	Intergenic	rs181563674-T	0.997	2E-6	(AA)	0.165	unit increase	Illumina [NR] (imputed)	N
1172	chr11	77026341	77026354	rs571866661	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	11q13.5	TOMM20P1	rs571866661-C	0.88	5E-7		1.2820514	[1.16-1.43]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1172	chr11	77033950	77033951	rs146103351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q13.5	PAK1	rs146103351-A	0.996	1E-6	(AA)	0.167	unit increase	Illumina [NR] (imputed)	N
1173	chr11	77121806	77121807	rs7925753	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs7925753-A	0.01394	1E-8	(CYP1A2)	0.5293	NR unit increase	Illumina [1671387] (imputed)	N
1173	chr11	77154638	77154639	rs527589	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	11q14.1	NR	rs527589-?	NR	3E-6	(CL_CLP)	1.75	[1.37-2.22]	Illumina [NR]	N
1174	chr11	77261050	77261051	rs7943055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q14.1	CLNS1A	rs7943055-T	0.371315	1E-14		0.01802024	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr11	77266595	77266596	rs139530741	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	Intergenic	rs139530741-G	0.993	1E-6	(AA)	0.111	unit increase	Illumina [NR] (imputed)	N
1174	chr11	77300047	77300048	rs7129556	23643386	Hatoum IJ	2013-05-02	Am J Hum Genet	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	11q14.1	AQP11	rs7129556-T	NR	4E-6		2.07	[1.19-2.95] unit decrease	Illumina [1943170] (imputed)	N
1174	chr11	77301340	77301341	rs2276415	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q14.1		rs2276415-A	0.1082	4E-12		0.15507008	[0.11-0.2] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1175	chr11	77359908	77359909	rs59986178	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q14.1	CLNS1A	rs59986178-G	0.8955	4E-9		0.176	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1175	chr11	77376805	77376806	rs1045590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q14.1		rs1045590-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1175	chr11	77425987	77425988	rs12418559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q14.1	NR	rs12418559-A	0.894989	2E-19		0.028169	[0.022-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1176	chr11	77507331	77507332	rs570786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q14.1		rs570786-C	NR	2E-15		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1176	chr11	77517972	77517973	rs75713100	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q14.1	NR	rs75713100-T	0.911098	4E-9		0.00832315	[0.0054-0.0112] unit increase	Affymetrix [16582909] (imputed)	N
1176	chr11	77517972	77517973	rs75713100	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q14.1	NR	rs75713100-T	0.911098	3E-10		0.0100233	[0.0068-0.0132] unit increase	Affymetrix [16582965] (imputed)	N
1176	chr11	77531889	77531890	rs11820337	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	11q14.1	RSF1	rs11820337-T	0.3486	4E-10		1.0237926	[NR]	Illumina [12493444] (imputed)	N
1176	chr11	77538948	77538949	rs202057889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q14.1	AAMDC	rs202057889-A	0.105876	1E-14		0.028078243	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1176	chr11	77583265	77583266	rs2186564	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q14.1		rs2186564-A	0.1105	9E-12		0.14888847	[0.11-0.19] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1176	chr11	77583265	77583266	rs2186564	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	11q14.1	C11orf67	rs2186564-?	0.17	3E-7		1.5	[1.29-1.74]	Illumina [2752055] (imputed)	N
1177	chr11	77595079	77595080	rs2051484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q14.1		rs2051484-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1177	chr11	77623872	77623873	rs10899415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q14.1	NR	rs10899415-C	0.399083	6E-17		0.015723	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1177	chr11	77624176	77624177	rs11534589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q14.1	AAMDC, INTS4	rs11534589-C	0.399267	2E-11		0.015373233	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1177	chr11	77624176	77624177	rs11534589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.1	NR	rs11534589-C	0.390239	8E-18				Affymetrix, Illumina [24588908] (imputed)	N
1177	chr11	77672864	77672865	rs12420528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.1	NR	rs12420528-A	0.8919	3E-18				Affymetrix, Illumina [17210439] (imputed)	N
1177	chr11	77677018	77677019	rs6592753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q14.1	INTS4	rs6592753-G	0.714526	2E-9		0.014946991	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1177	chr11	77719611	77719612	rs10899426	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	147 European ancestry women	NA	11q14.1	intergenic	rs10899426-?	NR	2E-7		2.74		Illumina [636555]	N
1177	chr11	77719611	77719612	rs10899426	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	11q14.1	intergenic	rs10899426-?	NR	9E-6		2.29		Illumina [636555]	N
1178	chr11	77742594	77742595	rs10793273	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	11q14.1	NDUFC2-KCTD14	rs10793273-T	0.81	2E-6		1.4084507		Affymetrix [at least 730985] (imputed)	N
1178	chr11	77756475	77756476	rs113553030	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	11q14.1	NDUFC2, KCTD14	rs113553030-T	0.75	5E-6		1.37		Illumina [8974355] (imputed)	N
1178	chr11	77802924	77802925	rs606164	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Body mass index	3,013 Korean ancestry individuals	NA	11q14.1	NR	rs606164-G	NR	2E-6		0.4025	[0.24-0.57] unit decrease	Affymetrix [NR]	N
1178	chr11	77807162	77807163	rs567697	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	11q14.1	RNU6-83	rs567697-T	0.8451	8E-6	(EA)			Illumina [NR] (imputed)	N
1178	chr11	77813848	77813849	rs684603	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	11q14.1	NR	rs684603-?	NR	6E-6		0.0248	[0.014-0.036] unit increase	Illumina [at least 560000] (imputed)	N
1178	chr11	77823227	77823228	rs570456	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	11q14.1	ALG8	rs570456-C	0.7392	9E-6	(EA)			Illumina [NR] (imputed)	N
1178	chr11	77829680	77829683	rs146917178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q14.1		rs146917178-C	NR	3E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1178	chr11	77845447	77845448	rs140736982	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ALG8	rs140736982-?	NR	6E-9	(male)	2.23881	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1178	chr11	77845447	77845448	rs140736982	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ALG8	rs140736982-?	NR	2E-9		1.76418	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1179	chr11	77909013	77909014	rs2510044	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q14.1		rs2510044-A	0.1395	1E-8		0.11556402	[0.076-0.155] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1179	chr11	77909013	77909014	rs2510044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q14.1		rs2510044-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1179	chr11	77916278	77916279	rs2450126	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q14.1		rs2450126-G	0.19	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
1179	chr11	77917304	77917305	rs2256464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q14.1		rs2256464-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1179	chr11	77920929	77920930	rs2511188	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q14.1	USP35	rs2511188-A	0.801251	3E-10		0.00298876	[0.002-0.0039] unit increase	Affymetrix [13995440] (imputed)	N
1179	chr11	77922959	77922960	rs2511177	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q14.1		rs2511177-T	0.19	2E-16		8.23	z score increase	Affymetrix [9061022] (imputed)	N
1179	chr11	77922959	77922960	rs2511177	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.1	NR	rs2511177-T	0.1623	1E-9				NR [9056863] (imputed)	N
1179	chr11	77924543	77924544	rs2450139	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q14.1		rs2450139-A	0.19	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
1179	chr11	77924543	77924544	rs2450139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q14.1		rs2450139-A	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1179	chr11	77924543	77924544	rs2450139	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q14.1	NR	rs2450139-A	0.1621	4E-9				NR [9056863] (imputed)	N
1179	chr11	77927100	77927101	rs2511162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	11q14.1		rs2511162-G	0.442743	5E-10		0.0178695	[0.012-0.023] unit decrease	Illumina [13478778] (imputed)	N
1179	chr11	77927100	77927101	rs2511162	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	11q14.1	GAB2	rs2511162-?	NR	2E-8		0.02077	[0.014-0.028] unit decrease novel	Illumina [6108953] (imputed)	N
1179	chr11	77940074	77940075	rs2450128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q14.1		rs2450128-A	NR	5E-13		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1179	chr11	77940074	77940075	rs2450128	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q14.1	GAB2	rs2450128-G	0.85	5E-10		6.22	z-score increase	Affymetrix [4312306] (imputed)	N
1179	chr11	77940074	77940075	rs2450128	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q14.1	GAB2	rs2450128-G	0.8456	4E-10		0.1505	[0.1-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1179	chr11	77948094	77948095	rs1017908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q14.1		rs1017908-C	NR	3E-21		0.0222	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1179	chr11	77953014	77953015	rs2512519	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	11q14.1	GAB2, NARS2, USP35	rs2512519-?	NR	4E-12				Affymetrix [up to 7325140] (imputed)	N
1179	chr11	77973979	77973980	rs2511158	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q14.1	GAB2	rs2511158-T	0.1622	1E-14		0.0255	[0.019-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1179	chr11	77976207	77976208	rs1981405	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q14.1	GAB2	rs1981405-T	0.1344	6E-9		0.0219	[0.014-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1180	chr11	77997935	77997936	rs7107174	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	11q14.1	GAB2	rs7107174-T	0.19	6E-6		1.19	1.10-1.29	Illumina [9210350] (imputed)	N
1180	chr11	77997935	77997936	rs7107174	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	11q14.1	GAB2	rs7107174-A	0.22	5E-6		1.17	[1.10-1.24]	Illumina [at least 371504] (imputed)	N
1180	chr11	77997935	77997936	rs7107174	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 4,009 cases, 10,082 European ancestry controls, 4,066 controls	11q14.1	GAB2, USP35	rs7107174-T	0.15	1E-10		1.26	[1.16-1.37]	Illumina [307291]	N
1180	chr11	78003150	78003151	rs7939352	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	11q14.1	GAB2	rs7939352-?	NR	3E-8				NR [1800000]	N
1180	chr11	78005077	78005078	rs11237442	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	11q14.1		rs11237442-A	0.14	4E-8		0.09	unit increase	Illumina [2093892] (imputed)	N
1180	chr11	78005077	78005078	rs11237442	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	11q14.1		rs11237442-A	0.14	2E-8		0.12	unit increase	Illumina [2398641] (imputed)	N
1180	chr11	78018312	78018313	rs10899469	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q14.1	GAB2	rs10899469-C	0.19	1E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1180	chr11	78021329	78021330	rs7941845	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	11q14.1	GAB2	rs7941845-?	NR	3E-10		0.02786	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1180	chr11	78023355	78023356	rs11237450	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q14.1	GAB2	rs11237450-A	0.254	5E-19		0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1180	chr11	78023355	78023356	rs11237450	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q14.1	GAB2	rs11237450-A	0.1666	3E-14		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1180	chr11	78023355	78023356	rs11237450	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	11q14.1	GAB2	rs11237450-A	0.4407	2E-6		0.0035	[0.0021-0.0049] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1180	chr11	78030917	78030917	rs372389982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q14.1		rs372389982-C	0.844001	3E-8		0.0307104	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
1180	chr11	78031735	78031737	rs35783812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q14.1	GAB2	rs35783812-T	0.771727	9E-10		0.01640488	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr11	78033842	78033843	rs371436826	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q14.1	NR	rs371436826-T	0.24597000000000002	5E-9		0.00594354	[0.0039-0.008] unit increase	Affymetrix [16582909] (imputed)	N
1180	chr11	78033842	78033843	rs371436826	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q14.1	NR	rs371436826-T	0.24597000000000002	4E-10		0.00732259	[0.005-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1180	chr11	78042305	78042306	rs202186505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q14.1		rs202186505-C	NR	4E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1180	chr11	78048523	78048524	rs2063730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q14.1		rs2063730-C	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1180	chr11	78048523	78048524	rs2063730	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11q14.1	GAB2, THRSP	rs2063730-C	0.18	2E-12		0.05	[0.036-0.064] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1180	chr11	78052863	78052864	rs2292572	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11q14.1	GAB2	rs2292572-?	NR	1E-13		1.1252391	NR	Affymetrix [9154080] (imputed)	N
1180	chr11	78052863	78052864	rs2292572	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q14.1	GAB2	rs2292572-?	NR	2E-24		1.1179429	NR	Affymetrix [9154080] (imputed)	N
1180	chr11	78056273	78056274	rs11237460	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q14.1		rs11237460-A	NR	4E-8		0.0394	[0.025-0.053] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1180	chr11	78068764	78068765	rs10899484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q14.1		rs10899484-G	NR	2E-10		0.0097	[0.0068-0.0126] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1180	chr11	78079083	78079084	rs7940841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q14.1	GAB2, RP11-452H21.1	rs7940841-G	0.161426	8E-11		0.020001503	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr11	78086004	78086005	rs10793308	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q14.1	GAB2	rs10793308-C	0.843	2E-8		0.098	[0.065-0.131] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1180	chr11	78091149	78091150	rs2373115	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q14.1		rs2373115-A	0.1649	3E-8		0.10620165	[0.069-0.143] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1180	chr11	78091149	78091150	rs2373115	17553421	Reiman EM	2007-06-07	Neuron	GAB2 alleles modify Alzheimer's risk in APOE epsilon4 carriers.	Alzheimer's disease (late onset)	446 cases, 290 controls	415 cases, 260 controls	11q14.1	GAB2	rs2373115-G	0.70	1E-10		4.06	[2.81-14.69]	Affymetrix [312316]	N
1180	chr11	78095372	78095373	rs10899489	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11q14.1		rs10899489-A	0.1861	2E-8		0.165311	[0.11-0.22] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1180	chr11	78095372	78095373	rs10899489	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11q14.1		rs10899489-A	0.186	5E-8		0.10631938	[0.069-0.144] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1180	chr11	78095372	78095373	rs10899489	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	11q14.1	GAB2	rs10899489-A	0.15	8E-9		3.1	[2.12-4.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1180	chr11	78099013	78099014	rs10793310	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q14.1	GAB2	rs10793310-T	0.8332	3E-11		0.0193	[0.014-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1180	chr11	78105878	78105879	rs10899490	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q14.1	GAB2	rs10899490-C	0.838633	2E-10		0.0170895	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1180	chr11	78117046	78117047	rs6592775	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.1	NR	rs6592775-G	0.209	4E-8		0.00739076	[0.0048-0.01] unit increase	NR [9732723] (imputed)	N
1181	chr11	78119821	78119822	rs4945275	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	11q14.1	GAB2	rs4945275-?	NR	1E-8		0.02126	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
1181	chr11	78126010	78126011	rs11237485	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	11q14.1	GAB2	rs11237485-?	NR	1E-14		0.03209	[0.024-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1181	chr11	78127825	78127826	rs5792806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q14.1	NR	rs5792806-T	NR	1E-10		0.0196	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1181	chr11	78127913	78127914	rs869202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q14.1		rs869202-G	NR	9E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1181	chr11	78127913	78127914	rs869202	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q14.1	GAB2	rs869202-A	0.83	2E-23		9.99	z-score increase	Affymetrix [4314223] (imputed)	N
1181	chr11	78128046	78128047	rs881361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q14.1		rs881361-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1181	chr11	78128774	78128775	rs11237488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q14.1		rs11237488-T	NR	6E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1181	chr11	78131407	78131408	rs10899501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.1		rs10899501-?	NR	2E-95				NR [~ 8900000] (imputed)	N
1181	chr11	78131407	78131408	rs10899501	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	11q14.1	GAB2	rs10899501-T	0.172	6E-44		0.049	[0.041-0.057] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1181	chr11	78133076	78133077	rs2063724	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	11q14.1	GAB2	rs2063724-T	0.659	1E-8		0.252	[0.054-0.45] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1181	chr11	78134158	78134158	rs531971847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q14.1		rs531971847-CTTAAAAA	NR	2E-17		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1181	chr11	78134158	78134158	rs531971847	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q14.1	LOC101928865	rs531971847-?	NR	4E-8		0.015880212	[0.01-0.022] unit increase	Illumina [27896057] (imputed)	N
1181	chr11	78134159	78134159	rs148466713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q14.1		rs148466713-TTAAAAA	NR	4E-8		0.0139	[0.009-0.0188] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1181	chr11	78204379	78204380	rs4474465	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	11q14.1	NARS2, GAB2	rs4474465-?		3E-6		1.44	[NR]	Illumina [803323]	N
1181	chr11	78218921	78218921	rs112418734	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q14.1		rs112418734-C	0.176546	3E-10		0.0346225	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1181	chr11	78218921	78218921	rs112418734	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q14.1		rs112418734-C	0.176546	1E-8		0.0304429	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1181	chr11	78246571	78246572	rs10899542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q14.1		rs10899542-G	NR	4E-9		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1182	chr11	78256997	78256998	rs10899551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q14.1	NARS2, RP11-843A23.1	rs10899551-A	0.825975	3E-9		0.017542569	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1182	chr11	78256997	78256998	rs10899551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q14.1	NARS2, RP11-843A23.1	rs10899551-A	0.825967	5E-12		0.020377377	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1182	chr11	78256997	78256998	rs10899551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q14.1	NARS2, RP11-843A23.1	rs10899551-A	0.825946	2E-11		0.019750353	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1182	chr11	78268877	78268878	rs7930161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q14.1	NARS2, RP11-843A23.1	rs7930161-A	0.826414	4E-11		0.019379133	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1182	chr11	78270019	78270020	rs10793332	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11q14.1	NARS2	rs10793332-C	0.261	1E-7		0.0019	[0.0011-0.0027] unit increase	Affymetrix [NR] (imputed)	N
1182	chr11	78292099	78292100	rs10899562	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	11q14.1	NR	rs10899562-G		9E-6		0.1633	[0.091-0.235] SD units increase	NR [10700000] (imputed)	N
1182	chr11	78362158	78362159	rs78802200	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs78802200-G	0.01045	2E-8	(EIF2B1)	0.02384	NR unit increase	Illumina [1671387] (imputed)	N
1183	chr11	78503448	78503449	rs17137161	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs17137161-G	0.0122	5E-9	(PEA15)	0.008114	NR unit increase	Illumina [1671387] (imputed)	N
1183	chr11	78503448	78503449	rs17137161	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs17137161-G	0.0122	2E-8	(ARHGDIA)	0.1003	NR unit increase	Illumina [1671387] (imputed)	N
1184	chr11	78517579	78517580	rs519063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q14.1		rs519063-T	0.00395686	1E-8		0.195735	[0.13-0.26] unit decrease	NR [11722792] (imputed)	N
1184	chr11	78533110	78533111	rs17137210	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	11q14.1	AAMDC, ALG8, AQP11, CLNS1A, GAB2, GDPD4, INTS4, KCTD14, KCTD21, KCTD21-AS1, MYO7A, NARS2, NDUFC2, NDUFC2-KCTD14, PAK1, RNU6-83P, RSF1, TENM4, THRSP, USP35	rs17137210-C	0.011700000000000044	5E-6		1.747699		Illumina [8265319] (imputed)	N
1184	chr11	78558238	78558239	rs547292	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.1	NR	rs547292-?	NR	2E-6		4.738	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1184	chr11	78592717	78592718	rs7930304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q14.1	NR	rs7930304-T	NR	2E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1184	chr11	78596972	78596973	rs636672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q14.1		rs636672-A	NR	3E-18		0.0202	[0.016-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1184	chr11	78597948	78597949	rs551619	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	11q14.1	TENM4	rs551619-C	0.648086	5E-30		0.00621322	[0.0052-0.0073] unit decrease	Affymetrix [13995440] (imputed)	N
1184	chr11	78625882	78625883	rs504245	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	11q14.1	TENM4	rs504245-?	NR	2E-6				Illumina [7401356] (imputed)	N
1184	chr11	78630890	78630891	rs61118809	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	11q14.1	TENM4	rs61118809-?	NR	7E-10				Illumina [7401356] (imputed)	N
1184	chr11	78636127	78636128	rs614624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q14.1	NR	rs614624-A	NR	2E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1185	chr11	78649615	78649616	rs143261188	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q14.1	ODZ4	rs143261188-C	0.992	3E-6	(liability model)	0.44	[0.24-0.64] unit decrease	NR [19725427] (imputed)	N
1185	chr11	78659144	78659145	rs11826937	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	11q14.1	ODZ4	rs11826937-A	0.97	3E-6		0.6	[0.35-0.85] unit decrease	Illumina [2675979] (imputed)	N
1185	chr11	78697128	78697129	rs79121401	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	11q14.1	NR	rs79121401-C		4E-6		0.5548	[0.32-0.79] SD units decrease	NR [10700000] (imputed)	N
1186	chr11	78809245	78809246	rs2187172	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	11q14.1	TENM4	rs2187172-A	0.275111292	1E-6		1.2159665	[1.123057491-1.316561682]	Illumina [10439017] (imputed)	N
1186	chr11	78835413	78835414	rs34339117	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q14.1	NR	rs34339117-?	NR	3E-8				Illumina [7760689] (imputed)	N
1186	chr11	78851479	78851480	rs7929919	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	11q14.1	Intergenic	rs7929919-?		9E-6				NR [NR]	N
1186	chr11	78861904	78861905	rs7114256	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change	13,807 European ancestry individuals	NA	11q14.1	ODZ4	rs7114256-A	0.92	9E-7		0.129	[0.07-0.188] unit increase	Affymetrix, Illumina [~ 25000000] (imputed)	N
1186	chr11	78873620	78873621	rs501435	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	11q14.1	TENM4	rs501435-A	0.40	9E-6		0.8	[0.45-1.15] unit increase	Illumina [6380737] (imputed)	N
1187	chr11	78920818	78920819	rs4945333	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	11q14.1	TENM4	rs4945333-G	0.245	9E-7				Affymetrix [432921]	N
1187	chr11	78966418	78966419	rs117191802	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	11q14.1	TENM4, MIR708, MIR5579	rs117191802-G	NR	4E-6	(wake after sleep onset, weekdays)	0.2407	[0.14-0.34] unit increase	Affymetrix [7141204] (imputed)	N
1187	chr11	78992685	78992686	rs1151200	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	ODZ4	rs1151200-G	0.419	4E-7	(Birth weight )	0.06	[NR] kg increase	Illumina [899892]	N
1187	chr11	79000128	79000129	rs642516	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	11q14.1	LOC646112, ODZ4	rs642516-A	0.6926	2E-6		4.803	z score increase	Affymetrix, Illumina [up to 1994688]	N
1187	chr11	79007235	79007236	rs80165398	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q14.1	TENM4	rs80165398-T	0.0247167081719686	1E-6	(F_Sutterellaceae_HB)	1.19875	[0.72-1.68] unit decrease	Illumina [7711310] (imputed)	N
1188	chr11	79063725	79063726	rs11600613	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs11600613-?	NR	8E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79065100	79065101	rs530965	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	11q14.1	intergenic	rs530965-?	NR	4E-6	(Nam)			Affymetrix [70897]	N
1188	chr11	79065319	79065320	rs508047	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	11q14.1	TENM4	rs508047-?	NR	8E-6				Illumina [at least 653030]	N
1188	chr11	79067723	79067724	rs17829127	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs17829127-?	NR	9E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79075351	79075352	rs4945345	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs4945345-?	NR	9E-10				Affymetrix [NR] (imputed)	N
1188	chr11	79076633	79076634	rs7928569	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs7928569-?	NR	7E-10				Affymetrix [NR] (imputed)	N
1188	chr11	79077192	79077193	rs12576775	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA		ODZ4	rs12576775-G	NR	3E-9		1.1829699	[1.11890240150022-1.25070508499166]	Illumina [at least 6195093] (imputed)	N
1188	chr11	79077192	79077193	rs12576775	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA		ODZ4	rs12576775-?	0.175	4E-8	(Modelling analysis)			NR [1252901] (imputed)	N
1188	chr11	79077192	79077193	rs12576775	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls		ODZ4	rs12576775-G	NR	4E-8		1.14	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1188	chr11	79077349	79077350	rs61882515	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs61882515-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79081881	79081882	rs75863428	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs75863428-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79083619	79083620	rs12290811	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA	11q14.1	ODZ4	rs12290811-A	NR	1E-9		1.19	[NR]	Illumina [2267487] (imputed)	N
1188	chr11	79083619	79083620	rs12290811	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	11q14.1	hsa-mir-708, ODZ4	rs12290811-?	NR	4E-6				Affymetrix [1769948] (imputed)	N
1188	chr11	79083619	79083620	rs12290811	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	11q14.1	NR	rs12290811-A	0.15	4E-6		1.2	[NR]	Affymetrix [1769948] (imputed)	N
1188	chr11	79085787	79085788	rs201147746	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs201147746-G	0.01045	2E-8	(MGMT)	0.008903	NR unit increase	Illumina [1671387] (imputed)	N
1188	chr11	79089887	79089888	rs11237814	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs11237814-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79090085	79090086	rs17829269	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs17829269-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79090449	79090450	rs11822489	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	11q14.1		rs11822489-?	NR	6E-9				Affymetrix [NR] (imputed)	N
1188	chr11	79092526	79092527	rs12289486	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	11q14.1	ODZ4	rs12289486-C	0.885	3E-8		0.92072	[0.89-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1188	chr11	79105798	79105799	rs12275195	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	11q14.1		rs12275195-?	NR	7E-9		0.016	NR unit increase	NR [6265453] (imputed)	N
1188	chr11	79114683	79114684	rs1511237	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	20,352 bipolar disorder cases, 4,819 Tourette's syndrome cases	NA	11q14.1		rs1511237-?	NR	5E-8		0.0211	NR unit increase	NR [6254473] (imputed)	N
1188	chr11	79123882	79123883	rs2175420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q14.1		rs2175420-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1188	chr11	79129614	79129615	rs12275127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.1	Intergenic	rs12275127-A	0.1694	4E-9	(MTAG)	0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1188	chr11	79129614	79129615	rs12275127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.1	Intergenic	rs12275127-A	0.1775	1E-12	(MTAG)	0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1188	chr11	79144855	79144856	rs7127580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.1		rs7127580-C	0.8925	3E-11		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1188	chr11	79153079	79153080	rs968369	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	11q14.1	ODZ4	rs968369-T	NR	2E-8		1.124	[1.079-1.171]	Illumina [3742365] (imputed)	N
1188	chr11	79156747	79156748	rs73496688	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q14.1	TENM4, MIR708, MIR5579	rs73496688-A	0.144	4E-7		1.08307	[1.05-1.11]	NR [9372253] (imputed)	N
1188	chr11	79156747	79156748	rs73496688	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	11q14.1	TENM4, MIR708, MIR5579	rs73496688-A	0.144	4E-7		1.11483		NR [9372253] (imputed)	N
1188	chr11	79162621	79162622	rs2373353	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q14.1	NR	rs2373353-A	NR	2E-8		5.655	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1189	chr11	79173081	79173082	rs1912702	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	11q14.1	MIR708, MIR5579, TENM4	rs1912702-?	NR	2E-6				Illumina [9143600] (imputed)	N
1189	chr11	79187910	79187911	rs11522732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q14.1	Intergenic	rs11522732-A	0.2758	2E-9	(MTAG)	0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1189	chr11	79192986	79192987	rs17138435	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.1	NR	rs17138435-?	NR	5E-9				Affymetrix [NR]	N
1189	chr11	79203048	79203049	rs75958070	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q14.1		rs75958070-C	0.12176	3E-8		0.2006	[0.13-0.27] unit decrease	Illumina [18335935] (imputed)	N
1189	chr11	79212005	79212006	rs6592847	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	NARS2	rs6592847-?	NR	4E-7	(glycine)	0.1983622	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1189	chr11	79217390	79217391	rs4278546	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11q14.1	intergenic	rs4278546-?	NR	8E-9		0.01424	[0.0094-0.0191] unit decrease	Affymetrix [25921788] (imputed)	N
1189	chr11	79230920	79230921	rs7951609	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q14.1	NR	rs7951609-?	NR	5E-8		1.0552753	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1189	chr11	79237886	79237887	rs1114504	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	11q14.1	ODZ4	rs1114504-?	NR	6E-6	(Male, Pre-puberty)	0.123	[0.068-0.178] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1189	chr11	79239500	79239501	rs11237887	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.1	NR	rs11237887-?	NR	8E-9				Affymetrix [NR]	N
1189	chr11	79287621	79287622	rs1944708	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11q14.1	intergenic	rs1944708-?	NR	3E-8		0.00175979	[-0.00312-0.00663] unit decrease	Affymetrix [25921788] (imputed)	N
1189	chr11	79287621	79287622	rs1944708	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11q14.1	intergenic	rs1944708-?	NR	3E-8		0.0137998	[0.0089-0.0187] unit decrease	Affymetrix [25921788] (imputed)	N
1190	chr11	79311442	79311443	rs949081	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	11q14.1	LOC105369405	rs949081-G	0.4272	9E-7		0.90068	NR	Affymetrix, Illumina [30341632] (imputed)	N
1190	chr11	79400958	79400959	rs7129360	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs7129360-A	0.01045	3E-9	(TXNL1)	0.06411	NR unit increase	Illumina [1671387] (imputed)	N
1190	chr11	79401270	79401271	rs56118860	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	11q14.1	NR	rs56118860-A	NR	1E-6	(female)	0.1912	[0.11-0.27] unit increase	Illumina [11133794] (imputed)	N
1191	chr11	79441693	79441694	rs11237982	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	11q14.1	ODZ4, NARS2	rs11237982-T	0.15	8E-7	(RAVLT-dr, EA)	0.3923	[0.24-0.55] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1191	chr11	79441693	79441694	rs11237982	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	11q14.1	ODZ4, NARS2	rs11237982-T	0.15	6E-7	(RAVLT-dr)	0.371	[0.23-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1191	chr11	79485136	79485137	rs12270115	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	11q14.1	NR	rs12270115-A	0.1334	5E-6		0.15	[0.088-0.22] unit increase	Affymetrix, Illumina [2403520] (imputed)	N
1192	chr11	79631596	79631597	rs596896	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q14.1	NR	rs596896-?		7E-8				Illumina [4322238] (imputed)	N
1194	chr11	79833286	79833287	rs1528632	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	11q14.1	TENM4, LOC101928944	rs1528632-?	NR	5E-9		0.02588	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1194	chr11	79864554	79864555	rs61882930	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	11q14.1	NR	rs61882930-?	NR	2E-6		0.6574	[0.48-0.83]	Illumina [NR] (imputed)	N
1194	chr11	79864554	79864555	rs61882930	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	11q14.1	NR	rs61882930-?	NR	1E-6		0.6229	[0.43-0.82]	Illumina [NR] (imputed)	N
1194	chr11	79871629	79871630	rs12798877	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q14.1		rs12798877-G	0.486	6E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1194	chr11	79873626	79873627	rs11231963	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.1	NR	rs11231963-G	0.469	6E-11		0.00706352	[0.0049-0.0092] unit decrease	NR [9732723] (imputed)	N
1194	chr11	79887548	79887549	rs4439537	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11q14.1	intergenic	rs4439537-T	0.476299	1E-10		0.0131615	[0.0091-0.0172] unit decrease	NR [16516521] (imputed)	N
1194	chr11	79898817	79898818	rs10792468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	NARS2	rs10792468-?	NR	2E-6	(TAG 48:4)	0.1673426	[0.099-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1194	chr11	79905971	79905972	rs10792472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q14.1	Intergenic	rs10792472-A	0.3579	2E-8	(MTAG)	0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1194	chr11	79905971	79905972	rs10792472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.1	Intergenic	rs10792472-A	0.3578	2E-9	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1194	chr11	79910414	79910415	rs144029093	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	Intergenic	rs144029093-T	0.999	8E-8	(AA)	0.406	unit increase	Illumina [NR] (imputed)	N
1195	chr11	79962148	79962149	rs11231991	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	11q14.1	intergenic	rs11231991-?	NR	4E-6	(EA)	0.0199	[0.01147-0.02826] unit decrease	Illumina [1530316]	N
1195	chr11	80008728	80008729	rs6591884	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	NARS2	rs6591884-?	NR	3E-7	(DAG 36:1)	0.19343789	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1195	chr11	80011789	80011790	rs7483049	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	NARS2	rs7483049-?	NR	4E-6	(taurine)	0.17745079	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1195	chr11	80021522	80021523	rs931105	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	11q14.1		rs931105-A	NR	7E-6		1.39	[1.21-1.61]	Illumina [7582931] (imputed)	N
1195	chr11	80045350	80045351	rs7127355	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	11q14.1		rs7127355-?	NR	9E-6				Illumina [7401356] (imputed)	N
1195	chr11	80058478	80058479	rs7395555	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	11q14.1	intergenic	rs7395555-C	0.145	2E-7	(Effect of Ziprasidone on CGI-S)			Affymetrix [492900]	N
1196	chr11	80139404	80139405	rs145171075	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	11q14.1	NR	rs145171075-?	NR	2E-6		4.2776	[2.50-6.05] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1196	chr11	80139404	80139405	rs145171075	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	11q14.1	NR	rs145171075-?	NR	6E-6		2.8724	[1.63-4.11] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1196	chr11	80140006	80140007	rs74601585	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	11q14.1	LOC101928944	rs74601585-?	NR	8E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1196	chr11	80210274	80210274	rs146590654	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11q14.1	NR	rs146590654-?	NR	4E-6		0.4	[0.35-0.46]	Illumina [539000] (imputed)	N
1197	chr11	80274644	80274645	rs117533819	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs117533819-C	0.01045	7E-9	(AGXT)	7.203	NR unit increase	Illumina [1671387] (imputed)	N
1197	chr11	80275390	80275391	rs76322105	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep start time	90,515 individuals	NA	11q14.1	LOC101928944	rs76322105-C	NR	4E-10		0.528	[0.36-0.69] unit increase	NR [11024754] (imputed)	N
1197	chr11	80285683	80285684	rs12576687	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	11q14.1	NR	rs12576687-?		9E-6		1.78	[1.38-2.29]	Illumina [539473] (imputed)	N
1197	chr11	80311670	80311671	rs2140930	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q14.1	NR	rs2140930-G	0.348471261394102	5E-6	(IGP58)	0.1678	[0.095-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
1197	chr11	80326286	80326287	rs117763281	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	11q14.1		rs117763281-?	NR	2E-8		1.7865	[1.16-2.41] unit increase	Affymetrix [NR] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q14.1		rs1880692-G	0.46	8E-36		12.5	z score increase	Affymetrix [9061022] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q14.1		rs1880692-G	0.46	3E-16		8.17	z score increase	Affymetrix [9061022] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.1	NR	rs1880692-G	0.468	1E-16				NR [9056863] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	11q14.1		rs1880692-?	NR	2E-11				NR [9705931] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q14.1		rs1880692-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.1		rs1880692-A	0.5346	1E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1197	chr11	80338068	80338069	rs1880692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.1	Intergenic	rs1880692-A	0.5346	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1198	chr11	80377051	80377052	rs17140547	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	11q14.1	intergenic	rs17140547-T	0.02	8E-6		532.56	[NR] unit decrease	Illumina [2380200] (imputed)	N
1198	chr11	80382726	80382727	rs74860738	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram and depression	2,963 European ancestry responder cases, 191,936 European ancestry healthy controls	NA	11q14.1	Intergenic	rs74860738-?		3E-7		1.2870014	[1.17-1.41]	Illumina [~ 12000000] (imputed)	N
1198	chr11	80389698	80389699	rs1917861	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	11q14.1	ODZ4, PRCP	rs1917861-G	0.67	1E-6	(Women)	0.010929617	[0.0065-0.0153] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1198	chr11	80418964	80418965	rs1945380	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	11q14.1	NR	rs1945380-?	0.5	2E-6	(African American, additive)	1.3888888	[1.22-1.59]	Affymetrix [NR]	N
1198	chr11	80459541	80459544	rs144546420	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	11q14.1	NR	rs144546420-C	NR	1E-6		0.3377	[0.2-0.47] SD units increase	NR [10700000] (imputed)	N
1198	chr11	80467854	80467855	rs184349069	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	11q14.1	NR	rs184349069-G		9E-6		0.5687	[0.32-0.82] SD units decrease	NR [10700000] (imputed)	N
1199	chr11	80510266	80510267	rs73513496	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	11q14.1	intergenic	rs73513496-G	NR	4E-6	(AA)	0.939	unit decrease	Illumina [at least 5086170] (imputed)	N
1199	chr11	80533351	80533352	rs4945437	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.1		rs4945437-?	NR	8E-7		1.07346	[1.05-1.1]	NR [685523]	N
1199	chr11	80559319	80559320	rs147751337	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q14.1	NR	rs147751337-?	NR	2E-8				Illumina [7760689] (imputed)	N
1199	chr11	80562737	80562738	rs11232369	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	11q14.1	AC018897.4	rs11232369-?	NR	8E-6	(Digit Span Forward)			Illumina [up to 563855]	N
1200	chr11	80685180	80685181	rs12791153	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q14.1	NR	rs12791153-T	NR	3E-8		1.32	unit increase	Affymetrix [14661600] (imputed)	N
1200	chr11	80685180	80685181	rs12791153	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	11q14.1		rs12791153-T	0.07724	3E-8		0.0256	[0.017-0.035] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1201	chr11	80743779	80743780	rs11232439	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	11q14.1		rs11232439-G	0.05974	4E-6		1.737	[1.37199999999999-2.197]	Affymetrix [7975321] (imputed)	N
1201	chr11	80840005	80840006	rs2177209	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q14.1	NR	rs2177209-A	0.372	4E-6	(IFNalpha_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
1201	chr11	80847848	80847849	rs2461673	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	11q14.1	intergenic	rs2461673-A	0.36	8E-6	(male)	0.0282	[0.016-0.04] unit decrease	Illumina [6380737] (imputed)	N
1201	chr11	80854374	80854375	rs1357339	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	11q14.1	intergenic	rs1357339-?	0.04	5E-6				Illumina [1212217]	N
1202	chr11	80901842	80901843	rs139161943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	11q14.1	Intergenic	rs139161943-C	NR	4E-6		0.0676275	[0.039-0.096] unit decrease	Illumina [13520550] (imputed)	N
1202	chr11	80901842	80901843	rs139161943	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	11q14.1	Intergenic	rs139161943-C	NR	7E-7		0.0844252	[0.051-0.118] unit decrease	Illumina [13520550] (imputed)	N
1202	chr11	80928808	80928809	rs11232535	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	11q14.1	intergenic	rs11232535-?	NR	7E-7		0.325	[0.20-0.45] unit increase	Illumina [> 2500000] (imputed)	N
1202	chr11	80932426	80932427	rs7125940	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q14.1	MIR4300	rs7125940-T	NR	7E-7	(Perc15, All)	1.9	[-0.06-3.86] unit decrease	Illumina [7600000] (imputed)	N
1202	chr11	80932826	80932827	rs7947523	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q14.1	MIR4300	rs7947523-C	NR	5E-7	(%LAA-950, All)	0.086	[-0.00808-0.18008] unit decrease	Illumina [7600000] (imputed)	N
1202	chr11	80936249	80936250	rs12576623	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	Taurine levels	996 European ancestry individuals	NA	11q14.1		rs12576623-C	0.05368	1E-12		0.7294112	unit decrease	Illumina [283704]	N
1202	chr11	80975988	80975989	rs2514486	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Time to aseptic loosening in total joint arthroplasty	97 individuals	NA	11q14.1	intergenic	rs2514486-A	NR	9E-6		3.01	[NR] years decrease	Illumina [up to 600000]	N
1202	chr11	80985547	80985548	rs1458095	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	11q14.1	NR	rs1458095-G	0.90	7E-6	(females)	0.19	[NR] kg increase	Illumina [318237]	N
1203	chr11	81002798	81002799	rs7124972	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	11q14.1	intergenic	rs7124972-?	NR	6E-7		3.0	[1.97-4.57]	Illumina [9077347] (imputed)	N
1203	chr11	81045282	81045283	rs12576553	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	PRCP	rs12576553-?	NR	7E-6	(TAG 50:5)	0.18914331	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1203	chr11	81047273	81047274	rs1458103	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	11q14.1	intergenic	rs1458103-C	NR	6E-8		1.1135857	[1.07-1.16]	Illumina [8933939] (imputed)	N
1203	chr11	81052953	81052954	rs117398913	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	11q14.1		rs117398913-T	0.99	2E-10				NR [NR] (imputed)	N
1203	chr11	81052953	81052954	rs117398913	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	11q14.1		rs117398913-T	0.99	3E-6		0.88	[0.51-1.25] unit decrease	NR [NR] (imputed)	N
1203	chr11	81052953	81052954	rs117398913	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	11q14.1		rs117398913-T	0.99	2E-6		0.88	[0.51-1.25] unit decrease	NR [NR] (imputed)	N
1203	chr11	81052953	81052954	rs117398913	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	11q14.1		rs117398913-T	0.99	2E-10				NR [NR] (imputed)	N
1203	chr11	81068278	81068279	rs60049480	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs60049480-C	0.01568	2E-8	(RNASE2)	0.03765	NR unit increase	Illumina [1671387] (imputed)	N
1204	chr11	81180499	81180500	rs11232681	32740585	Sood RF	2020-08-01	Plast Reconstr Surg	Genetic Risk of Trigger Finger: Results of a Genomewide Association Study.	Trigger finger	942 European ancestry cases, 24,472 European ancestry controls	NA	11q14.1	RP11-664H7.2	rs11232681-G	0.249	2E-7		1.31	[1.19-1.46]	Illumina [7846471] (imputed)	N
1204	chr11	81190239	81190240	rs72945305	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q14.1	ENSG00000254747	rs72945305-?	NR	3E-8		0.012761661	[0.0082-0.0173] unit decrease	NR [7306098]	N
1204	chr11	81202909	81202910	rs7122181	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q14.1	intergenic	rs7122181-?		4E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [NR]	N
1204	chr11	81202909	81202910	rs7122181	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q14.1	NR	rs7122181-T	NR	2E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1204	chr11	81203520	81203521	rs7934083	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q14.1	MIR4300	rs7934083-C	NR	4E-7	(EA)	1.0575297	[1.04-1.08]	Illumina [6627481] (imputed)	N
1204	chr11	81203520	81203521	rs7934083	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q14.1	MIR4300	rs7934083-C	NR	2E-7		1.0548522	[1.03-1.08]	Illumina [6627481] (imputed)	N
1204	chr11	81203520	81203521	rs7934083	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q14.1	intergenic	rs7934083-C	NR	2E-7		1.0548522	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1204	chr11	81219607	81219608	rs75797933	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	11q14.1		rs75797933-?	NR	2E-9				Illumina [1128286]	N
1204	chr11	81235149	81235150	rs2032381	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	11q14.1	NR	rs2032381-G	0.9212	4E-6		5.6947	[NR] unit decrease	Illumina [1200000] (imputed)	N
1206	chr11	81433204	81433204	rs200453611	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	11q14.1	Intergenic	rs200453611-A	0.84	2E-6	(AA)			Illumina [NR] (imputed)	N
1208	chr11	81661750	81661751	rs59570576	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	11q14.1		rs59570576-?	NR	2E-7		0.28	[0.18-0.38] unit decrease	Illumina [5082878] (imputed)	N
1208	chr11	81669556	81669557	rs78750958	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11q14.1	MIR4300HG	rs78750958-A	0.02632	3E-6	(African)			Illumina [4404269] (imputed)	N
1208	chr11	81711113	81711114	rs78261967	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs78261967-G	0.04181	4E-9	(HRG)	0.06051	NR unit increase	Illumina [1671387] (imputed)	N
1208	chr11	81751210	81751211	rs72952442	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	11q14.1	MIR4300, FAM181B	rs72952442-G	0.03	2E-7		0.16	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1208	chr11	81764448	81764449	rs680029	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	11q14.1		rs680029-?	NR	6E-6		4.872		Illumina [5932083] (imputed)	N
1209	chr11	81811228	81811229	rs11607499	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	11q14.1	PRCP	rs11607499-T	0.954	2E-6	(opposite direction)	1.27	[1.15-1.40]	Illumina [up to 6000000] (imputed)	N
1210	chr11	81964682	81964683	rs582124	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q14.1	LOC101928989	rs582124-?		6E-6				Illumina [4322238] (imputed)	N
1211	chr11	82065322	82065323	rs41374152	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.1	NR	rs41374152-?	NR	1E-8				Affymetrix [NR]	N
1211	chr11	82082561	82082562	rs1828853	29016859	Ogura Y	2017-10-15	Hum Mol Genet	A functional variant in MIR4300HG, the host gene of microRNA MIR4300 is associated with progression of adolescent idiopathic scoliosis.	Curve progression in adolescent idiopathic scoliosis	1,105 Japanese ancestry AIS progression cases, 832 Japanese ancestry AIS non-progression controls	323 Japanese ancestry AIS progression cases, 283 Japanese ancestry AIS non-progression controls	11q14.1	MIR4300	rs1828853-A	0.768	2E-9		1.56	[1.35-1.8]	Illumina [7521072] (imputed)	N
1211	chr11	82149018	82149019	rs151033805	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs151033805-C	0.01045	9E-21	(LTF)	0.5568	NR unit increase	Illumina [1671387] (imputed)	N
1211	chr11	82149018	82149019	rs151033805	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs151033805-C	0.01045	6E-17	(B2M)	0.02107	NR unit increase	Illumina [1671387] (imputed)	N
1212	chr11	82199064	82199065	rs12790238	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	4,780 European ancestry children	NA	11q14.1	NR	rs12790238-T	0.016	5E-7		1152.66	[702.88-1602.44] unit decrease	Illumina [27449291] (imputed)	N
1212	chr11	82199064	82199065	rs12790238	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	11q14.1	NR	rs12790238-T	0.016	8E-7		1627.77	[982.97-2272.57] unit decrease	Illumina [27449291] (imputed)	N
1212	chr11	82287415	82287416	rs4323895	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	11q14.1	FAM181B	rs4323895-A	0.9388	9E-7		0.0169	[0.01-0.024] unit increase	Affymetrix [~ 7740000] (imputed)	N
1213	chr11	82379806	82379806	rs571457372	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MIR4300HG	rs571457372-?	NR	2E-9	(female)	2.33053	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1213	chr11	82397013	82397014	rs11233250	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	11q14.1	intergenic	rs11233250-C	0.868	5E-6		1.14	1.08-1.21	Illumina [at least 6887412] (imputed)	N
1213	chr11	82397013	82397014	rs11233250	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	11q14.1	intergenic	rs11233250-C	0.868	1E-9		1.24	1.16-1.33	Illumina [at least 6790270] (imputed)	N
1213	chr11	82437117	82437118	rs474357	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	11q14.1	FAM181B	rs474357-?	NR	6E-7		0.127	[0.068-0.186] unit increase	Illumina [6319684] (imputed)	N
1214	chr11	82564293	82564294	rs2229437	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRCP	5,362 Icelandic ancestry individuals	NA	11q14.1		rs2229437-G	0.1635	4E-16		0.203051	[0.15-0.25] unit increase	Illumina [7506463] (imputed)	N
1214	chr11	82564293	82564294	rs2229437	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q14.1	PRCP	rs2229437-G	0.181	3E-20	(Lysosomal Pro-X carboxypeptidase, PRCP.5722.78.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1214	chr11	82569805	82569806	rs12289095	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.1	NR	rs12289095-?	NR	7E-33				Affymetrix [NR]	N
1214	chr11	82571313	82571314	rs10898041	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q14.1	PRCP	rs10898041-G	0.8375	2E-9	(PRCP, 5722_78_3)	0.19886452	[0.13-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1215	chr11	82649767	82649768	rs10792665	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	C11orf82	rs10792665-C	0.443	6E-6	(Total T3 )	0.03	[NR] ng/dL increase	Illumina [899892]	N
1216	chr11	82723071	82723072	rs11233413	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	11q14.1	RAB30	rs11233413-T	NR	4E-7		0.108	[0.067-0.149] unit decrease	Illumina [628922]	N
1216	chr11	82779165	82779166	rs35256261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q14.1	RAB30	rs35256261-C	0.529782	3E-9		0.014133175	[0.0095-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1216	chr11	82798225	82798226	rs17144566	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q14.1	RAB30-AS1	rs17144566-C	0.8055	3E-6		0.0087	[0.005-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
1216	chr11	82821381	82821382	rs4293143	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.1	PCF11, RAB30	rs4293143-?	0.31	8E-6	(EA)	1.18	[1.1-1.27]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1217	chr11	82860426	82860426	rs551624271	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q14.1	NR	rs551624271-GTGGCT	0.006	2E-15	(Lysosomal Pro-X carboxypeptidase, PRCP.5722.78.3)	1.36	[1.03-1.69] unit decrease	Affymetrix [10572788] (imputed)	N
1217	chr11	82864094	82864095	rs11233492	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	11q14.1	Intergenic	rs11233492-T	NR	1E-6		1.24004	[0.74-1.74] unit increase	Illumina [13519193] (imputed)	N
1217	chr11	82876269	82876270	rs1943345	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	PCF11	rs1943345-C	0.239	7E-6	(Moderate activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1218	chr11	82972096	82972097	rs1278402	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q14.1	ANKRD42CCDC90B	rs1278402-A	0.736	2E-9		1.0284985		Affymetrix [11880941] (imputed)	N
1218	chr11	83018774	83018775	rs7933220	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.1	NR	rs7933220-?	NR	1E-9	(right putamen)			NR [9227495] (imputed)	N
1218	chr11	83055364	83055365	rs117285296	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	11q14.1	intergenic	rs117285296-A	0.153	8E-7		1.56	[1.31-1.85]	Illumina [5479070] (imputed)	N
1219	chr11	83161159	83161160	rs17519683	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11q14.1	Intergenic	rs17519683-?	NR	2E-6		1.396	[NR]	Affymetrix [492217] (imputed)	N
1219	chr11	83167336	83167337	rs17145219	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	11q14.1	NR	rs17145219-C	0.89	3E-9		1.04	[1.03, 1.06]	Affymetrix [39302896] (imputed)	N
1219	chr11	83184838	83184839	rs2043208	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	11q14.1	DLG2	rs2043208-A	0.235	7E-6		1.4	[1.21-1.63]	Illumina [5479070] (imputed)	N
1219	chr11	83197721	83197722	rs12294291	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	11q14.1		rs12294291-?	NR	1E-8		0.0189	NR unit decrease	NR [4425810] (imputed)	N
1219	chr11	83199275	83199276	rs1864774	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q14.1	DLG2	rs1864774-C	NR	2E-8		1.0548522	[1.04-1.07]	Illumina [6627481] (imputed)	N
1219	chr11	83199275	83199276	rs1864774	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q14.1	DLG2	rs1864774-C	NR	2E-6	(EA)	1.0532968	[1.03-1.07]	Illumina [6627481] (imputed)	N
1219	chr11	83199275	83199276	rs1864774	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q14.1	intergenic	rs1864774-C	NR	2E-7		1.049318	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1219	chr11	83199275	83199276	rs1864774	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q14.1	NR	rs1864774-C	NR	9E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1219	chr11	83204131	83204132	rs11607886	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q14.1	ANKRD42, CCDC90B, DLG2	rs11607886-?		2E-14				NR [7428630] (imputed)	N
1220	chr11	83256867	83256868	rs2116483	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.1	DLG2	rs2116483-A	0.416	8E-6	(Energy intake )	0.02	[NR] kcal/d increase	Illumina [899892]	N
1220	chr11	83260073	83260074	rs1432052	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11q14.1	ANKRD42, CCDC90B, DLG2	rs1432052-?	NR	9E-9		0.00169672	[-0.00327-0.00666] unit decrease	Affymetrix [25921788] (imputed)	N
1220	chr11	83260073	83260074	rs1432052	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11q14.1	ANKRD42, CCDC90B, DLG2	rs1432052-?	NR	9E-9		0.0144715	[0.0095-0.0194] unit increase	Affymetrix [25921788] (imputed)	N
1220	chr11	83260224	83260225	rs1432054	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q14.1	NR	rs1432054-A	0.6437	2E-14		7.677	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1220	chr11	83274484	83274485	rs500359	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q14.1	NR	rs500359-A		4E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
1220	chr11	83276167	83276168	rs683250	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	11q14.1	DLG2	rs683250-A	0.63	4E-11	(Putamen, EA)	27.95	[19.66-36.24] mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1220	chr11	83277324	83277325	rs667730	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q14.1	NR	rs667730-T	0.5788	2E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1220	chr11	83277543	83277544	rs666845	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	11q14.1	DLG2	rs666845-?	NR	2E-8		34.24	[22.32-46.16] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1220	chr11	83325060	83325060	rs35692233	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.1	NR	rs35692233-?	NR	2E-10	(left putamen)			NR [9227495] (imputed)	N
1220	chr11	83325113	83325114	rs1228632	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.1	NR	rs1228632-?	NR	6E-11	(right putamen)			NR [9227495] (imputed)	N
1220	chr11	83325539	83325540	rs2436153	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	11q14.1	NR	rs2436153-T	0.3886	4E-6		0.1442	[0.083-0.205] unit increase	Illumina [10677593] (imputed)	N
1220	chr11	83331888	83331889	rs1233917	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q14.1	NR	rs1233917-?		1E-16				NR [7428630] (imputed)	N
1220	chr11	83344692	83344693	rs77707008	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q14.1		rs77707008-?	NR	3E-6		0.9376932	[0.912891735293861-0.963168482367592]	Illumina [7827597] (imputed)	N
1221	chr11	83365942	83365943	rs10466716	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.1	NR	rs10466716-?	NR	3E-7				Affymetrix [NR]	N
1221	chr11	83405432	83405433	rs9888248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.1	NR	rs9888248-?	NR	6E-9	(right putamen)			NR [9227495] (imputed)	N
1221	chr11	83405432	83405433	rs9888248	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.1	NR	rs9888248-?	NR	5E-9	(left putamen)			NR [9227495] (imputed)	N
1221	chr11	83437958	83437959	rs12797204	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	11q14.1	DLG2	rs12797204-?		4E-8				Illumina [563980]	N
1221	chr11	83455706	83455707	rs3885683	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q14.1	DLG2	rs3885683-?	0.11	8E-6	(MCP1)			Illumina [496032]	N
1221	chr11	83471513	83471513	rs202170665	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	11q14.1		rs202170665-?	NR	5E-6		2.5	[1.54-4]	Illumina [6778521] (imputed)	N
1221	chr11	83487276	83487277	rs12283611	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	11q14.1	DLG2	rs12283611-A	0.4148	3E-10		0.0645	[0.045-0.084] unit decrease	NR [7784415] (imputed)	N
1221	chr11	83489414	83489415	rs1155311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q14.1		rs1155311-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1222	chr11	83503403	83503404	rs7479949	28011712	Foo JN	2016-12-22	Hum Mol Genet	Genome-wide association study of Parkinson's disease in East Asians.	Parkinson's disease	779 Han Chinese ancestry cases, 13,227 Han Chinese ancestry controls	5,125 Asian ancestry cases, 17,604 Asian ancestry controls	11q14.1	DLG2, LOC100130985, LOC100130066	rs7479949-?	NR	6E-8		1.16		Illumina [2402394] (imputed)	N
1222	chr11	83510116	83510117	rs12278023	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	11q14.1	DLG2	rs12278023-?	NR	2E-8				Illumina [5843213] (imputed)	N
1222	chr11	83544471	83544472	rs3793947	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	11q14.1	DLG2	rs3793947-A		5E-7		0.0715	[0.044-0.099] unit decrease	Illumina [NR]	N
1222	chr11	83544471	83544472	rs3793947	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	11q14.1	DLG2	rs3793947-G	0.558	4E-9		1.0752687	[1.05-1.1]	Illumina [11933700] (imputed)	N
1222	chr11	83544471	83544472	rs3793947	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	11q14.1	DLG2	rs3793947-G	0.557	4E-7		1.0764	[1.05-1.11]	Illumina [7893274] (imputed)	N
1222	chr11	83558222	83558223	rs61900031	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q14.1	NR	rs61900031-?	NR	9E-11		6.491	NR z score increase	Illumina [at least 830937] (imputed)	N
1222	chr11	83558373	83558374	rs10898160	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	11q14.1	Intergenic	rs10898160-?		6E-6		1.351	[NR]	Affymetrix [492217] (imputed)	N
1222	chr11	83580305	83580306	rs76809954	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q14.1	NR	rs76809954-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1222	chr11	83620786	83620787	rs790356	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	11q14.1	DLG2	rs790356-G	0.5	4E-15		1.28	[1.17-1.39]	Illumina [599255]	N
1223	chr11	83694771	83694772	rs2449598	32701512	Cairns J	2020-07-23	JCI Insight	Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action.	Estrogen level change in anastrozole-treated breast cancer	624 individuals	NA	11q14.1	DLG2	rs2449598-A	0.4808	2E-10		0.4897	[0.34-0.64] unit decrease	Illumina [up to 8000000] (imputed)	N
1224	chr11	83794498	83794499	rs74777764	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	11q14.1		rs74777764-A	NR	3E-8		0.285	[0.19-0.38] unit decrease	Affymetrix [509886] (imputed)	N
1224	chr11	83818328	83818329	rs150829342	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	DLG2	rs150829342-G	0.998	5E-8	(AA)	0.2	unit increase	Illumina [NR] (imputed)	N
1225	chr11	83892523	83892524	rs1670685	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	11q14.1	DLG2	rs1670685-G	0.02	3E-6		0.183	[0.11-0.26] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1225	chr11	83900802	83900803	rs117618210	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DLG2	rs117618210-?	NR	8E-9		1.69264	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1225	chr11	83906579	83906580	rs117751000	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DLG2	rs117751000-?	NR	3E-8	(male)	2.69192	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1225	chr11	83917145	83917146	rs189780858	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	DLG2	rs189780858-T	0.998	6E-8	(AA)	0.192	unit increase	Illumina [NR] (imputed)	N
1225	chr11	83917145	83917146	rs189780858	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	DLG2	rs189780858-T	0.998	4E-6	(AA)	0.82	NR unit increase	Illumina [NR] (imputed)	N
1225	chr11	83952654	83952655	rs77949879	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.1	NR	rs77949879-G	0.01045	9E-9	(RBP1)	0.06912	NR unit increase	Illumina [1671387] (imputed)	N
1225	chr11	84005843	84005844	rs1567970	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	11q14.1	DLG2	rs1567970-G	NR	1E-6		0.0250111	[0.015-0.035] unit increase	Illumina [13519193] (imputed)	N
1225	chr11	84005843	84005844	rs1567970	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	11q14.1	DLG2	rs1567970-G	NR	6E-6		0.0211429	[0.012-0.03] unit increase	Illumina [13520550] (imputed)	N
1226	chr11	84046439	84046440	rs149365710	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	11q14.1	DLG2	rs149365710-A	0.01	2E-6		5.13	[2.60-10.12]	Illumina [7959153] (imputed)	N
1226	chr11	84048201	84048202	rs192772225	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.1	DLG2	rs192772225-A	1.0	9E-8	(AA)	0.47	unit increase	Illumina [NR] (imputed)	N
1227	chr11	84152133	84152134	rs80268399	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	11q14.1	DLG2	rs80268399-T	0.967	5E-6		1.71	[1.34-2.16]	Affymetrix, Illumina [12148595] (imputed)	N
1227	chr11	84178288	84178289	rs10898240	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q14.1		rs10898240-C	0.732	4E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1227	chr11	84179646	84179647	rs147995154	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	11q14.1	DLG2	rs147995154-A	0.008	3E-6		6.07	[2.85-12.92]	Illumina [7959153] (imputed)	N
1227	chr11	84183434	84183435	rs655484	28952330	Chen SP	2017-01-01	Cephalalgia	Genome-wide association study identifies novel susceptibility loci for migraine in Han Chinese resided in Taiwan.	Migraine without aura	1,005 Han Chinese ancestry cases, 1,053 Han Chinese ancestry controls	1,120 Han Chinese ancestry cases, 604 Han Chinese ancestry controls	11q14.1	DLG2	rs655484-C	0.941	1E-12		2.423	[1.883-3.118]	Affymetrix [590945]	N
1227	chr11	84192770	84192771	rs10898243	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.1	TMEM126B	rs10898243-?	NR	1E-7	(triiodothyronine)	0.24542183	[0.15-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1227	chr11	84247122	84247123	rs10501568	25008200	Feng P	2014-07-09	BMC Oral Health	Genome wide association scan for chronic periodontitis implicates novel locus.	Chronic periodontitis	63 European ancestry cases, 543 European ancestry controls, up to 32 African American cases, up to 158 African American controls, up to 4 cases, up to 66 controls	495 European ancestry cases, 981 European ancestry controls, 118 African ancestry cases, 225 African ancestry controls	11q14.1	DLG2	rs10501568-?	NR	9E-6				Illumina [473514]	N
1228	chr11	84335665	84335666	rs17807909	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	11q14.1	DLG2	rs17807909-?	0.01117	2E-19		13.66	[12.94-14.38]	Affymetrix [547296]	N
1228	chr11	84335665	84335666	rs17807909	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	11q14.1	DLG2	rs17807909-?	0.01117	5E-15		10.09	[5.018-20.3]	Affymetrix [547296]	N
1228	chr11	84351759	84351760	rs11234103	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	11q14.1	DLG2	rs11234103-T	0.1072	2E-6		0.2951	[0.17-0.42] unit increase	NR [NR] (imputed)	N
1228	chr11	84351759	84351760	rs11234103	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	11q14.1	DLG2	rs11234103-T	0.0996	3E-6		0.3173	[0.18-0.45] unit increase	NR [NR] (imputed)	N
1228	chr11	84377620	84377621	rs7939569	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11q14.1	Intergenic	rs7939569-?	NR	3E-6		1.5375154	[NR]	Affymetrix [492217] (imputed)	N
1228	chr11	84377620	84377621	rs7939569	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q14.1	DLG2	rs7939569-A	NR	4E-6				Illumina [up to 11995908] (imputed)	N
1228	chr11	84377620	84377621	rs7939569	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q14.1	DLG2	rs7939569-A	NR	3E-7	(AA)			Illumina [up to 11995908] (imputed)	N
1229	chr11	84417845	84417846	rs10501570	17052657	Fung HC	2006-09-28	Lancet Neurol	Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data.	Parkinson's disease	267 European ancestry cases, 270 European ancestry controls	NA	11q14.1	DLG2	rs10501570-?	NR	7E-6		5.0	[2.00-12.50]	Illumina [408803]	N
1229	chr11	84470224	84470225	rs142615018	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q14.1	CTD-2537O9.1, DLG2	rs142615018-T	0.0125	4E-7		0.1545	[0.095-0.214] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr11	84589921	84589922	rs17147674	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	11q14.1	DLG2	rs17147674-T	0.032	5E-6	(HRTSE)	2.2	[1.26-3.14] unit decrease	Illumina [799713]	N
1230	chr11	84609156	84609157	rs558729974	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	11q14.1	DLG2	rs558729974-A	0.0077	5E-6		0.3397	[0.19-0.49] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr11	84609156	84609157	rs558729974	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	11q14.1	DLG2	rs558729974-A	0.0075	7E-6		0.3234	[0.18-0.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr11	84634789	84634790	rs2155413	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q14.1	NR	rs2155413-C		2E-18		0.1	[0.08-0.12] unit increase	NR [NR]	N
1230	chr11	84634789	84634790	rs2155413	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q14.1	ANKRD42, CCDC90B, DLG2, CREBZF, CCDC89, SYTL2, PICALM, EED, ME3	rs2155413-?		2E-53				Affymetrix, Illumina [NR] (imputed)	N
1230	chr11	84634789	84634790	rs2155413	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q14.1	DLG2	rs2155413-A	0.4823	9E-15		7.755	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1230	chr11	84634789	84634790	rs2155413	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	11q14.1	NR	rs2155413-A	0.4677	2E-16		0.0576	[0.044-0.071] unit decrease	Illumina [~ 10600000] (imputed)	N
1230	chr11	84634789	84634790	rs2155413	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11q14.1	DLG2	rs2155413-?	NR	2E-25		1.0787487	[1.06-1.09]	Illumina [13762925] (imputed)	N
1230	chr11	84637837	84637838	rs190500889	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	11q14.1	NR	rs190500889-?	NR	3E-6		0.462	[0.27-0.66] unit increase	Illumina [at least 560000] (imputed)	N
1230	chr11	84648067	84648068	rs7102934	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q14.1	DLG2	rs7102934-T	0.687506	1E-9		0.00907898	[0.0062-0.012] unit decrease	Affymetrix [12370749]	N
1231	chr11	84752913	84752914	rs11823251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q14.1		rs11823251-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1231	chr11	84776848	84776849	rs349071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.1	NR	rs349071-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1231	chr11	84776848	84776849	rs349071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q14.1		rs349071-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1231	chr11	84776848	84776849	rs349071	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11q14.1	NA	rs349071-A	0.4993	4E-13		0.0139	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1231	chr11	84800037	84800038	rs2444253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q14.1		rs2444253-G	NR	2E-9		0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1231	chr11	84800818	84800819	rs582399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q14.1		rs582399-A	NR	8E-9		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1232	chr11	84814392	84814393	rs349088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q14.1	NA	rs349088-A	0.4777	4E-14		0.013	[0.0097-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
1232	chr11	84822320	84822321	rs1452928	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	11q14.1	intergenic	rs1452928-?	NR	7E-7	(ShaftW1f)			Affymetrix [70897]	N
1232	chr11	84825043	84825044	rs540153	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q14.1	DLG2	rs540153-?		6E-6				Illumina [4322238] (imputed)	N
1232	chr11	84841572	84841573	rs1532312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.1	Intergenic	rs1532312-T	0.2978	4E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1232	chr11	84859425	84859426	rs116875887	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q14.1	Intergenic	rs116875887-C	0.9903	2E-8		0.0557	[0.036-0.075] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1232	chr11	84867509	84867510	rs17148028	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	11q14.1	DLG2	rs17148028-T	NR	6E-7	(EA)	0.48	[0.36-0.64]	Illumina [629283] (imputed)	N
1232	chr11	84871676	84871677	rs117214796	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	11q14.1	DLG2	rs117214796-?		4E-8	(Adalimumab)	0.86	[0.55-1.17] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1232	chr11	84897573	84897574	rs74443493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q14.1	Intergenic	rs74443493-A	0.0223	2E-9	(MTAG)	0.0363	[0.024-0.048] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1232	chr11	84904741	84904742	rs580652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.1		rs580652-T	0.9017	5E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1232	chr11	84904741	84904742	rs580652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.1	Intergenic	rs580652-T	0.9017	1E-10	(MTAG)	0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr11	85017475	85017476	rs17148090	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	11q14.1	DLG2	rs17148090-?	NR	4E-8	(levels)	0.7	[NR] % increase	Illumina [NR] (imputed)	N
1233	chr11	85058943	85058944	rs2930575	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.1	NR	rs2930575-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1234	chr11	85072957	85072958	rs286043	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q14.1		rs286043-T	0.98321	3E-6		30.72797	z score increase	NR [6814003]	N
1234	chr11	85105112	85105113	rs286028	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	11q14.1	DLG2	rs286028-A	0.1571	1E-6		0.0458	[0.027-0.064] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1234	chr11	85117530	85117531	rs2055816	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	BMI at adiposity rebound	6,051 European ancestry children	12,192 European ancestry children	11q14.1	DLG2	rs2055816-C	0.25	5E-6		0.07	[0.031-0.109] unit decrease	Affymetrix, Illumina [up to 2543888] (imputed)	N
1234	chr11	85131330	85131331	rs144299539	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q14.1	DLG2	rs144299539-T	0.0107315063389089	5E-6	(F_Enterococcaceae_HB)	1.28474	[0.73-1.84] unit increase	Illumina [7711310] (imputed)	N
1234	chr11	85164750	85164751	rs10898392	19570815	Estrada K	2009-07-01	Hum Mol Genet	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	11q14.1	TMEM126B, TMEM126A	rs10898392-T	NR	3E-6				Affymetrix, Illumina, Perlegen [2228850] (imputed)	N
1234	chr11	85193868	85193869	rs286499	25584925	Chen W	2015-01-13	Ann Am Thorac Soc	A genome-wide association study of chronic obstructive pulmonary disease in Hispanics.	Chronic obstructive pulmonary disease	94 Costa Rican founder population smoker cases, 412 Costa Rican founder population smoker controls, 63 Hispanic ancestry cases, 619 Hispanic ancestry controls	47 Hispanic ancestry smoker cases, 290 Hispanic ancestry smoker controls	11q14.1	DLG2	rs286499-G	0.86	8E-8		1.2	[NR] unit decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1235	chr11	85265778	85265779	rs77300868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.1	Intergenic	rs77300868-A	0.976	1E-10	(MTAG)	0.0349	[0.024-0.045] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1235	chr11	85272193	85272194	rs201909661	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	11q14.1	DLG2	rs201909661-A	0.01812899999999995	4E-6	(men)	0.0672787	[0.039-0.096] unit increase	Affymetrix [641018] (imputed)	N
1235	chr11	85310785	85310786	rs881120	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q14.1	DLG2	rs881120-T	0.6151	2E-6		0.0329	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1235	chr11	85322399	85322400	rs536665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q14.1	NA	rs536665-A	0.7979	2E-12		0.0171	[0.012-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1236	chr11	85346409	85346410	rs78281755	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q14.1		rs78281755-T	0.02135	6E-6		2.442	[1.659-3.594]	Affymetrix [7975321] (imputed)	N
1236	chr11	85365173	85365174	rs140047528	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q14.1		rs140047528-?	NR	1E-7		2.26262	[1.96-2.57]	NR [674885]	N
1236	chr11	85396879	85396880	rs117983694	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11q14.1	Intergenic	rs117983694-A	NR	7E-8	(between families)	5.399	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1236	chr11	85398918	85398919	rs76702070	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	11q14.1	CCDC89	rs76702070-T	0.956705	1E-9		0.0468896	[0.032-0.062] unit decrease	NR [16426330] (imputed)	N
1236	chr11	85436351	85436352	rs641393	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11q14.1	NR	rs641393-A	0.352552234858503	2E-7				NR [9276018] (imputed)	N
1236	chr11	85436698	85436699	rs598346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q14.1		rs598346-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1236	chr11	85436867	85436868	rs597480	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nonsteroidal anti-inflammatory drugs)	144 European ancestry cases, 10,588 European ancestry controls	NA	11q14.1		rs597480-?		4E-7		1.84	1.45-2.32	Illumina [505740] (imputed)	N
1237	chr11	85495194	85495195	rs7925465	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q14.1	SYTL2	rs7925465-?		7E-6				Illumina [4322238] (imputed)	N
1237	chr11	85526398	85526399	rs17148514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q14.1		rs17148514-T	NR	7E-10		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1237	chr11	85526398	85526399	rs17148514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q14.1		rs17148514-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1237	chr11	85575453	85575454	rs113384182	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	11q14.1	NR	rs113384182-?	NR	4E-6		0.2271	[0.13-0.32] unit increase	Illumina [at least 560000] (imputed)	N
1237	chr11	85576126	85576127	rs36093844	26741287	Milet J	2016-01-07	Genes Immun	Genome-wide association study of antibody responses to Plasmodium falciparum candidate vaccine antigens.	IgG response to Plasmodium falciparum antigens (GLURP, MSP2 FC27, MSP2 3D7)	528 Sereer ancestry individuals from 130 families	NA	11q14.1	CCDC83, PICALM	rs36093844-?	NR	6E-6				Affymetrix [174950]	N
1238	chr11	85596213	85596214	rs56160063	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Type A behavior	3,268 European ancestry individuals	NA	11q14.1	NR	rs56160063-G	0.7544	2E-6		0.1334	[0.079-0.188] unit decrease	Illumina [8348463] (imputed)	N
1238	chr11	85598258	85598259	rs76506794	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q14.1		rs76506794-C	0.01898	8E-6		2.482	[1.664-3.702]	Affymetrix [7975321] (imputed)	N
1238	chr11	85628309	85628321	rs144553941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q14.2		rs144553941-G	NR	6E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1238	chr11	85628309	85628321	rs144553941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q14.2	NR	rs144553941-G	NR	4E-9		0.0157	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1238	chr11	85640493	85640494	rs186828225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brachyspirales abundance in stool	5,959 Finnish ancestry individuals	NA	11q14.2		rs186828225-T	0.0156539	2E-8		0.148747	[0.097-0.201] unit increase	Illumina [7980478] (imputed)	N
1238	chr11	85640493	85640494	rs186828225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brachyspirae abundance in stool	5,959 Finnish ancestry individuals	NA	11q14.2		rs186828225-T	0.0156539	5E-8		0.137139	[0.088-0.186] unit increase	Illumina [7980478] (imputed)	N
1238	chr11	85640493	85640494	rs186828225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brachyspiraceae abundance in stool	5,959 Finnish ancestry individuals	NA	11q14.2		rs186828225-T	0.0156539	3E-8		0.157311	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
1238	chr11	85640493	85640494	rs186828225	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brachyspira abundance in stool	5,959 Finnish ancestry individuals	NA	11q14.2		rs186828225-T	0.0156539	3E-8		0.170683	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1238	chr11	85642443	85642444	rs7107455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q14.2	NR	rs7107455-G	0.165176	8E-11		0.015955	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1238	chr11	85649097	85649098	rs111908689	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine metabolism (carbamazepine-10,11-diol to carbamazepine ratio) in epilepsy	468 European ancestry cases	NA	11q14.2	NR	rs111908689-?		1E-6		0.11	[NR] unit decrease	Illumina [NR]	N
1238	chr11	85652825	85652826	rs598561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.2	Intergenic	rs598561-A	0.4893	1E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr11	85666439	85666440	rs556562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q14.2		rs556562-C	NR	2E-17		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1238	chr11	85671701	85671702	rs618679	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q14.2		rs618679-A	0.197	6E-9				Affymetrix [10369434] (imputed)	N
1238	chr11	85677470	85677471	rs17817600	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	11q14.2	PICALM	rs17817600-?	NR	2E-8		1.33	[NR]	Illumina [2543888] (imputed)	N
1238	chr11	85681582	85681583	rs639012	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	11q14.2	PICALM	rs639012-G	0.7	1E-7		1.1627907	[1.1-1.22]	NR [NR]	N
1238	chr11	85682778	85682778	rs552000109	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q14.2		rs552000109-C	0.841	2E-8		0.09	[0.06-0.12] % increase	Affymetrix [NR] (imputed)	N
1238	chr11	85702129	85702130	rs7938033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q14.2		rs7938033-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1238	chr11	85715735	85715736	rs527162	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs527162-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1239	chr11	85731285	85731286	rs655641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q14.2	PICALM	rs655641-G	0.8086	4E-9		0.02664876	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1239	chr11	85735034	85735035	rs141354661	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q14.2		rs141354661-T	0.01903	9E-6		2.463	[1.654-3.668]	Affymetrix [7975321] (imputed)	N
1239	chr11	85766350	85766350	rs773095550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q14.2	PICALM	rs773095550-CAAA	0.754052	5E-17		0.024048062	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85766350	85766350	rs773095550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q14.2	PICALM	rs773095550-CAAA	0.754061	2E-11		0.019137273	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1239	chr11	85776543	85776544	rs867611	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	11q14.2	PICALM	rs867611-G	0.314	2E-18		8.75	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1239	chr11	85781321	85781322	rs669556	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.2	NR	rs669556-C	0.1923	3E-8				NR [9056863] (imputed)	N
1239	chr11	85781321	85781322	rs669556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.2	NR	rs669556-T	0.785464	5E-17				Affymetrix, Illumina [24588908] (imputed)	N
1239	chr11	85781321	85781322	rs669556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q14.2	NR	rs669556-T	0.804592	7E-17		0.019345	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1239	chr11	85783737	85783738	rs621942	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	11q14.2	PICALM	rs621942-A	.24	9E-6		1.22	[NR]	Illumina [484295]	N
1239	chr11	85783874	85783875	rs2458493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q14.2	NR	rs2458493-A	0.189235	7E-12		0.016763	[0.012-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1239	chr11	85787823	85787824	rs536841	21627779	Antunez C	2011-05-31	Genome Med	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls	11q14.2	PICALM	rs536841-?	NR	3E-9		1.16	[NR]	Affymetrix, Illumina [696707] (imputed)	N
1239	chr11	85800278	85800279	rs561655	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	11q14.2		rs561655-?	NR	1E-26				Illumina [NR] (imputed)	N
1239	chr11	85800278	85800279	rs561655	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	11q14.2	PICALM	rs561655-?	0.66	7E-11		1.15	[1.10-1.19]	Affymetrix, Illumina [2324889] (imputed)	N
1239	chr11	85808432	85808433	rs117226991	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q14.2	PICALM	rs117226991-G	0.0120467212045395	3E-6	(G_unclassified_F_Coriobacteriaceae_RNT)	0.551713	[0.32-0.78] unit increase	Illumina [7711310] (imputed)	N
1239	chr11	85812784	85812785	rs17745409	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs17745409-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1239	chr11	85831432	85831433	rs580887	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs580887-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1239	chr11	85831540	85831541	rs471470	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	11q14.2	PICALM	rs471470-A	0.68	3E-8		1.1627907	[1.1-1.23]	NR [NR]	N
1239	chr11	85831689	85831690	rs472486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q14.2	NR	rs472486-G	0.646327	2E-19		0.021195149	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85831689	85831690	rs472486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q14.2	NR	rs472486-G	0.64634	1E-17		0.02001243	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85831689	85831690	rs472486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q14.2		rs472486-G	0.646361	5E-12		0.016203297	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85831689	85831690	rs472486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q14.2		rs472486-G	0.646409	7E-22		0.022436792	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85831689	85831690	rs472486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q14.2		rs472486-G	0.646419	9E-21		0.021799225	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr11	85838807	85838808	rs10792830	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	11q14.2	AP003097.1	rs10792830-?	0.44	6E-6		1.25	[NR]	Illumina [1847262] (imputed)	N
1239	chr11	85839934	85839935	rs7114401	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs7114401-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1239	chr11	85843196	85843197	rs67598967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q14.2		rs67598967-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1239	chr11	85845472	85845473	rs7938634	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs7938634-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1239	chr11	85849093	85849094	rs11234554	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	11q14.2	PICALM	rs11234554-C	0.46	1E-6	(conditional on rs117261012)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1239	chr11	85850242	85850243	rs3844143	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	11q14.2	PICALM	rs3844143-C	NR	5E-11		6.562	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1240	chr11	85858252	85858253	rs10898438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q14.2		rs10898438-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1240	chr11	85859915	85859916	rs10898440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q14.2	RNU6-560P	rs10898440-T	0.554165	1E-12		0.015869074	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr11	85861418	85861419	rs7480193	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs7480193-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1240	chr11	85862546	85862547	rs78944797	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q14.2		rs78944797-G	0.02194	8E-6		2.366	[1.62199999999999-3.451]	Affymetrix [7975321] (imputed)	N
1240	chr11	85863079	85863080	rs56157503	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs56157503-?	NR	8E-9				Affymetrix [7795605] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q14.2		rs10792832-A	0.3843	1E-15		76.51319	z score increase	NR [6814003]	N
1240	chr11	85867874	85867875	rs10792832	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	11q14.2	PICALM	rs10792832-?	NR	4E-18		1.1363636	[1.1-1.16]	Affymetrix [up to 7055881] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	11q14.2	PICALM	rs10792832-?	NR	2E-11		1.1627907		Affymetrix [up to 7700000] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	11q14.2	PICALM	rs10792832-?		1E-14				NR [NR]	N
1240	chr11	85867874	85867875	rs10792832	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	11q14.2	PICALM	rs10792832-A	NR	6E-9		0.009614	NR unit decrease	Affymetrix [10847151] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	11q14.2	PICALM	rs10792832-A	0.3702	7E-18		8.61	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	11q14.2	PICALM	rs10792832-A	NR	1E-17		8.56	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Paternal history of Alzheimer's disease	14,338 British ancestry cases, 245,941 British ancestry controls	NA	11q14.2	NR	rs10792832-?		2E-6		1.0845798	NR	Affymetrix [7795605] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	11q14.2	NR	rs10792832-?	NR	2E-7		1.0670139	NR	Affymetrix [7795605] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	11q14.2	NR	rs10792832-?	NR	2E-12		1.0730445		Affymetrix [7795605] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs10792832-?	NR	6E-33		1.1004289	[1.08330873363297- 1.1178195976052]	Affymetrix [7795605] (imputed)	N
1240	chr11	85867874	85867875	rs10792832	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	11q14.2	PICALM	rs10792832-G	0.65	4E-6		1.14	[1.08-1.19]	NR [NR]	N
1240	chr11	85867874	85867875	rs10792832	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q14.2	PICALM	rs10792832-G	0.642	9E-26		1.1494	[1.12-1.18]	Illumina [7055881] (imputed)	N
1240	chr11	85868639	85868640	rs3851179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q14.2	RNU6-560P	rs3851179-C	0.628614	9E-11		0.0151421325	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr11	85868639	85868640	rs3851179	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	11q14.2	PICALM, FNTAP1	rs3851179-C	0.648	1E-8		1.1764705	[1.11-1.23]	Affymetrix, Illumina [38043082] (imputed)	N
1240	chr11	85868639	85868640	rs3851179	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	11q14.2	NR	rs3851179-?	NR	2E-12		1.0752687		Affymetrix [7795605] (imputed)	N
1240	chr11	85868639	85868640	rs3851179	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	11q14.2	PICALM	rs3851179-C	0.65	2E-6		1.1235955	[1.06-1.18]	NR [NR]	N
1240	chr11	85868639	85868640	rs3851179	19734902	Harold D	2009-09-06	Nat Genet	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls	11q14.2	PICALM	rs3851179-?	0.63	1E-9		1.16	[1.11-1.22]	Illumina [529205]	N
1240	chr11	85869736	85869737	rs7113976	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.2	Intergenic	rs7113976-T	0.4274	8E-9	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1240	chr11	85869736	85869737	rs7113976	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs7113976-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1240	chr11	85871183	85871184	rs7129687	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs7129687-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1240	chr11	85871213	85871214	rs61904266	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs61904266-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1240	chr11	85874321	85874322	rs11603136	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q14.2	NR	rs11603136-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1240	chr11	85892052	85892053	rs188562678	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q14.2	RP11-12D16.2	rs188562678-T	0.0021	8E-6		0.414	[0.23-0.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1240	chr11	85921711	85921712	rs145375841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q14.2		rs145375841-G	0.0601350000000001	9E-11		0.03116147	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr11	85927212	85927213	rs1466802	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11q14.2	EED	rs1466802-C	0.775	7E-10		0.0169	[0.012-0.022] unit increase	Illumina [~ 250000] (imputed)	N
1240	chr11	85931324	85931325	rs3851186	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q14.2	EED	rs3851186-T	0.2116	7E-9		0.015413395	[0.01-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1240	chr11	85935944	85935945	rs7947529	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q14.2		rs7947529-C	0.213	1E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1240	chr11	85935944	85935945	rs7947529	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q14.2	NR	rs7947529-T	0.781	1E-8		0.0100888	[0.0066-0.0136] unit decrease	NR [9732723] (imputed)	N
1240	chr11	85956477	85956478	rs2291813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q14.2		rs2291813-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1240	chr11	85980957	85980958	rs7929518	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.2	NR	rs7929518-G	0.773	6E-15		0.010027	[0.0075-0.0125] unit increase	NR [9732723] (imputed)	N
1240	chr11	85980957	85980958	rs7929518	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q14.2	NR	rs7929518-G	0.773	3E-10		0.019236272	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1241	chr11	86055900	86055901	rs6592284	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	11q14.2	C11orf73	rs6592284-?	0.21	2E-6	(IED)			Illumina [475971]	N
1241	chr11	86084877	86084878	rs7951433	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	11q14.2	Intergenic	rs7951433-?	NR	6E-7		0.007	unit increase	Affymetrix [7969123] (imputed)	N
1241	chr11	86104494	86104495	rs118086209	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	11q14.2	CCDC81	rs118086209-C	0.02	2E-7		2.19	[NR]	Illumina [1468075]	N
1241	chr11	86108473	86108474	rs4944571	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	11q14.2	CCDC81, ME3	rs4944571-G	0.34	9E-6		0.072	[0.041-0.103] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1242	chr11	86167135	86167136	rs2125362	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	11q14.2	ME3	rs2125362-A	0.684	4E-6	(Hispanic/Latino+AfricanAmerican)	1.31	[0.68-2.56]	Affymetrix [~ 8700000] (imputed)	N
1242	chr11	86167135	86167136	rs2125362	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	11q14.2	ME3	rs2125362-A	0.684	2E-7	(Hispanic/Latino)	1.84	[1.46-2.30]	Affymetrix [~ 8700000] (imputed)	N
1242	chr11	86188151	86188152	rs1870323	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	11q14.2	ME3	rs1870323-T	0.64	2E-6	(Allelic)	2.92	[1.87-4.57]	Illumina [555600]	N
1243	chr11	86293926	86293927	rs11234702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q14.2	RP11-317J19.1, ME3	rs11234702-C	0.355054	4E-10		0.014463178	[0.0099-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr11	86293926	86293927	rs11234702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q14.2	NR	rs11234702-C	0.355651	2E-10		0.012867	[0.0089-0.0168] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1243	chr11	86293926	86293927	rs11234702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q14.2		rs11234702-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1243	chr11	86294854	86294855	rs7117702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q14.2	RP11-317J19.1, ME3	rs7117702-C	0.360792	4E-9		0.013654668	[0.0091-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr11	86294854	86294855	rs7117702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q14.2	RP11-317J19.1, ME3	rs7117702-C	0.36044	3E-9		0.0134101	[0.0092-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr11	86295764	86295765	rs1945139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q14.2	RP11-317J19.1, ME3	rs1945139-T	0.35739	1E-10		0.015046228	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr11	86297188	86297189	rs949349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q14.2		rs949349-C	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1243	chr11	86297188	86297189	rs949349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.2	NR	rs949349-C	0.310344	8E-10				Affymetrix, Illumina [23472807] (imputed)	N
1243	chr11	86297188	86297189	rs949349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q14.2	NR	rs949349-C	0.271122	3E-11		0.014189	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1243	chr11	86298699	86298700	rs11234705	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	11q14.2	ME3	rs11234705-C	0.436	3E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
1243	chr11	86305816	86305817	rs17149197	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.2	NR	rs17149197-?	NR	1E-10				Affymetrix [NR]	N
1243	chr11	86311255	86311256	rs4500512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q14.2	RP11-317J19.1, ME3	rs4500512-A	0.240949	6E-11		0.017014327	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr11	86311255	86311256	rs4500512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.2	NR	rs4500512-A	0.243144	2E-12				Affymetrix, Illumina [22063850] (imputed)	N
1243	chr11	86311255	86311256	rs4500512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q14.2	NR	rs4500512-A	0.241177	2E-15		0.017994	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1243	chr11	86321717	86321718	rs72955481	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	11q14.2	ME3	rs72955481-C	NR	3E-9		0.808722	[0.74-0.88]	Illumina [NR] (imputed)	N
1243	chr11	86325886	86325887	rs17211409	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	11q14.2	ME3	rs17211409-?	NR	6E-8	(Hispanic/Latino)	11.6	[7.48-15.72] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1243	chr11	86326788	86326789	rs12576144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q14.2		rs12576144-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1243	chr11	86329017	86329018	rs17757676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q14.2		rs17757676-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1243	chr11	86337649	86337650	rs4944611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q14.2	NR	rs4944611-C	0.309718	9E-11		0.012955	[0.009-0.0169] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1243	chr11	86338248	86338249	rs4944612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.2	NR	rs4944612-C	0.396536	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1243	chr11	86352460	86352461	rs2226566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11q14.2		rs2226566-A	NR	3E-12		0.0974	[0.07-0.125] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1243	chr11	86368105	86368106	rs10792871	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11q14.2	ME3	rs10792871-T	NR	6E-21		0.119	unit increase	Illumina [15409056] (imputed)	N
1244	chr11	86400956	86400957	rs7948924	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q14.2	ME3, PRSS23	rs7948924-T	0.8	4E-10		0.109	[0.075-0.143] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1244	chr11	86401194	86401195	rs75853826	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11q14.2	ME3	rs75853826-A	NR	5E-6		0.118693344	[0.046-0.191] unit decrease	Illumina [> 6200000] (imputed)	N
1244	chr11	86401226	86401227	rs7939319	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q14.2	ME3, PRSS23	rs7939319-T	0.8004	2E-10		0.112	[0.078-0.146] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1244	chr11	86401677	86401678	rs11234741	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11q14.2	ME3	rs11234741-A	0.8	2E-14				Affymetrix, Illumina [8002429] (imputed)	N
1244	chr11	86406158	86406159	rs746491	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11q14.2	ME3	rs746491-?	NR	2E-14		0.1216	[0.091-0.153] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1244	chr11	86406158	86406159	rs746491	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	11q14.2	ME3	rs746491-?	NR	4E-6		1.0899153	[1.05069095486461-1.13060399638518]	Affymetrix [up to 40000000] (imputed)	N
1244	chr11	86410240	86410241	rs2433414	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q14.2	NR	rs2433414-T		5E-11		0.12	[0.081-0.159] unit increase	NR [NR]	N
1244	chr11	86410240	86410241	rs2433414	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q14.2	ME3	rs2433414-C	0.797	7E-16		0.128	[0.097-0.159] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1244	chr11	86414281	86414282	rs2512987	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	11q14.2	ME3	rs2512987-T	0.417	7E-6	(Allelic model)	2.985	[1.855-4.803]	Illumina [733202]	N
1244	chr11	86442732	86442733	rs145729347	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	11q14.2	ME3, PRSS23	rs145729347-C	0.1508	9E-9		0.031	[0.021-0.041] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1244	chr11	86444760	86444761	rs117261012	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	11q14.2	PRSS23	rs117261012-G	0.16	7E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
1244	chr11	86448838	86448839	rs11234768	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	11q14.2	PRSS23	rs11234768-T	0.8458	5E-10		0.0216	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1244	chr11	86448838	86448839	rs11234768	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11q14.2	PRSS23	rs11234768-T	0.8458	5E-20		0.0303	[0.024-0.037] unit increase	Affymetrix [19819130] (imputed)	N
1244	chr11	86448838	86448839	rs11234768	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11q14.2	PRSS23	rs11234768-T	0.8458	2E-13		0.0239	[0.018-0.03] unit increase	Affymetrix [19819130] (imputed)	N
1244	chr11	86448838	86448839	rs11234768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q14.2		rs11234768-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1244	chr11	86500200	86500201	rs11606902	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q14.2	PRSS23	rs11606902-C	0.798	6E-10		0.098	[0.067-0.129] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1244	chr11	86505071	86505072	rs2000538	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q14.2	NR	rs2000538-G		4E-8		0.1	[0.061-0.139] unit increase	NR [NR]	N
1245	chr11	86625895	86625896	rs10898553	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	11q14.2	Intergenic	rs10898553-?	NR	2E-6		2.1276596		Illumina [2711511] (imputed)	N
1245	chr11	86634422	86634423	rs4567493	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11q14.2	PRSS23	rs4567493-A	0.3789	6E-13		0.005	[0.0036-0.0064] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1245	chr11	86637336	86637337	rs2156172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q14.2		rs2156172-G	NR	3E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1246	chr11	86643335	86643336	rs78763847	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	11q14.2		rs78763847-A	NR	3E-6		1.1411	[1.09-1.2]	Illumina [11600722] (imputed)	N
1246	chr11	86644388	86644389	rs1350171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q14.2	NR	rs1350171-T	NR	8E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1246	chr11	86644388	86644389	rs1350171	26870257	Qu LS	2015-11-23	Oncol Lett	Nine susceptibility loci for hepatitis B virus-related hepatocellular carcinoma identified by a pilot two-stage genome-wide association study.	Hepatocellular carcinoma in hepatitis B infection	50 Han Chinese ancestry seropositive cases, 50 Han Chinese ancestry seropositive controls	282 Han Chinese ancestry seropositive cases, 278 Han Chinese ancestry seropositive controls	11q14.2	FZD4	rs1350171-?	NR	6E-6		1.66	[1.33-2.07]	Affymetrix [279757]	N
1246	chr11	86653987	86653988	rs149504726	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.2	PRSS23	rs149504726-G	0.994813	9E-61		0.195749	[0.17-0.22] unit decrease	NR [13737936] (imputed)	N
1246	chr11	86653987	86653988	rs149504726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q14.2		rs149504726-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1246	chr11	86653987	86653988	rs149504726	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs149504726-?	NR	1E-34		0.156756	[0.13-0.18] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr11	86653987	86653988	rs149504726	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	PRSS23	rs149504726-G	0.993614	8E-6	(women)	0.139055	[0.078-0.2] unit decrease	NR [17166351] (imputed)	N
1246	chr11	86653987	86653988	rs149504726	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	PRSS23	rs149504726-G	0.993527	1E-11		0.157002	[0.11-0.2] unit decrease	NR [17166351] (imputed)	N
1246	chr11	86653987	86653988	rs149504726	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	PRSS23	rs149504726-G	0.993428	3E-7	(men)	0.174932	[0.11-0.24] unit decrease	NR [17166351] (imputed)	N
1246	chr11	86697571	86697572	rs61903841	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.2	LOC100506368	rs61903841-G	0.594871	2E-10		0.0121513	[0.0084-0.0159] unit increase	NR [13737936] (imputed)	N
1246	chr11	86717986	86717987	rs7102513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q14.2		rs7102513-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1246	chr11	86724003	86724004	rs921874	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q14.2	NR	rs921874-A	0.2038	4E-8	(European)	0.0434	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1246	chr11	86740572	86740573	rs4944662	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11q14.2	LOC100506368, TMEM135	rs4944662-C	0.18	1E-11		0.0076	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1246	chr11	86748436	86748437	rs2445575	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11q14.2	TMEM135	rs2445575-T	0.81	1E-8		0.00634	[0.0042-0.0085] unit increase	Affymetrix [at least 8002429] (imputed)	N
1246	chr11	86752387	86752388	rs2512376	30779856	Lu HF	2019-02-19	J Bone Miner Res	A meta-analysis of genome-wide association studies identifies three loci associated with stiffness index of the calcaneus.	Calcaneus stiffness index	7,742 Taiwanese ancestry individuals	2,955 Korean ancestry individuals	11q14.2	TMEM135	rs2512376-?	0.6246	4E-8		0.0881	[0.057-0.119] unit decrease	Affymetrix [~ 6100000] (imputed)	N
1247	chr11	86781531	86781532	rs180758259	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q14.2	NR	rs180758259-?	NR	4E-8				Illumina [7760689] (imputed)	N
1247	chr11	86791876	86791877	rs2445584	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs2445584-?	NR	2E-20		0.0184193	[0.014-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86803193	86803194	rs2445565	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		11q14.2	TMEM135	rs2445565-G	0.47	4E-6		0.013	[0.0071-0.0189] dioptres decrease	NR [5901671] (imputed)	N
1247	chr11	86853996	86853997	rs597319	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2	TMEM135	rs597319-?	NR	9E-230		0.0705653	[0.066-0.075] unit decrease	Affymetrix [20259828] (imputed)	N
1247	chr11	86853996	86853997	rs597319	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q14.2	TMEM135	rs597319-G	0.31	4E-14		0.09	[0.07-0.11] unit decrease	Illumina [11973598] (imputed)	N
1247	chr11	86853996	86853997	rs597319	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q14.2	TMEM135	rs597319-G	0.31	1E-8	(female)	0.09	[0.051-0.129] unit decrease	Illumina [11973598] (imputed)	N
1247	chr11	86853996	86853997	rs597319	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	11q14.2	TMEM135	rs597319-G	0.31	8E-14	(BUA)	0.06	[0.04-0.07] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1247	chr11	86853996	86853997	rs597319	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	11q14.2	TMEM135	rs597319-G	0.33	5E-26	(VOS)	0.07	[0.06-0.08] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1247	chr11	86854308	86854309	rs608966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q14.2		rs608966-?	NR	9E-261				NR [~ 8900000] (imputed)	N
1247	chr11	86854406	86854406	rs764257935	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs764257935-?	NR	2E-147		0.0664249	[0.061-0.072] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86854407	86854408	rs67692806	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs67692806-?	NR	5E-43		0.114317	[0.098-0.131] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86857173	86857174	rs482339	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.2	TMEM135	rs482339-C	0.690144	2E-253		0.0698379	[0.066-0.074] unit increase	NR [13737936] (imputed)	N
1247	chr11	86859065	86859066	rs533931	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q14.2	TMEM135	rs533931-A	0.11	3E-7	(female)	0.12	[0.081-0.159] unit decrease	Illumina [11973598] (imputed)	N
1247	chr11	86860074	86860074	rs553840798	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs553840798-?	NR	3E-36		0.0465315	[0.039-0.054] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86862396	86862397	rs636159	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q14.2	TMEM135	rs636159-T	0.32	4E-7	(male)	0.1	[0.061-0.139] unit decrease	Illumina [11973598] (imputed)	N
1247	chr11	86868070	86868071	rs576679	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	11q14.2	TMEM135	rs576679-G	0.6849000000000001	7E-27		0.0344	[0.028-0.041] unit decrease	NR [13977204] (imputed)	N
1247	chr11	86869576	86869577	rs649693	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs649693-?	NR	3E-250		0.0732604	[0.069-0.078] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86869576	86869577	rs649693	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs649693-T	0.691104	3E-49	(women)	0.0704485	[0.061-0.08] unit increase	NR [17166351] (imputed)	N
1247	chr11	86869576	86869577	rs649693	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs649693-T	0.690918	4E-77		0.065657	[0.059-0.073] unit increase	NR [17166351] (imputed)	N
1247	chr11	86869576	86869577	rs649693	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs649693-T	0.690704	3E-30	(men)	0.0614175	[0.051-0.072] unit increase	NR [17166351] (imputed)	N
1247	chr11	86870510	86870511	rs664398	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	11q14.2	TMEM135	rs664398-T	0.689194	2E-8		0.0464	[0.03-0.062] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1247	chr11	86870652	86870653	rs75506452	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs75506452-?	NR	3E-39		0.0666716	[0.057-0.077] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86870656	86870657	rs664918	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs664918-?	NR	3E-133		0.0789928	[0.073-0.085] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86879010	86879011	rs511755	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs511755-?	NR	5E-250		0.0732316	[0.069-0.078] unit decrease	Affymetrix [20259828] (imputed)	N
1247	chr11	86879010	86879011	rs511755	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q14.2	TMEM135	rs511755-C	0.32	4E-11		0.08	[0.06-0.1] unit decrease	Illumina [11973598] (imputed)	N
1247	chr11	86880457	86880458	rs540403	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	11q14.2	NR	rs540403-A	0.3312	1E-9		0.0699	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1247	chr11	86881368	86881368	rs34575204	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	11q14.2	NR	rs34575204-?	0.687717139720917	2E-10		0.0733462	[0.051-0.096] SD units increase	Illumina [11603265] (imputed)	N
1247	chr11	86881368	86881368	rs34575204	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs34575204-?	NR	7E-251		0.0733346	[0.069-0.078] unit increase	Affymetrix [20259828] (imputed)	N
1247	chr11	86881640	86881641	rs489247	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	11q14.2	NR	rs489247-G	0.258	1E-11		0.083	[0.059-0.107] SD units decrease	Illumina [11603265] (imputed)	N
1247	chr11	86884614	86884615	rs603140	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density variance	197,261 European ancestry individuals	NA	11q14.2	TMEM135	rs603140-?	NR	2E-12				NR [5554549] (imputed)	N
1247	chr11	86884614	86884615	rs603140	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Heel bone mineral density	197,261 European ancestry individuals	NA	11q14.2	TMEM135	rs603140-?	NR	4E-98				NR [5554549] (imputed)	N
1247	chr11	86886649	86886650	rs505429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q14.2		rs505429-G	NR	2E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1247	chr11	86887930	86887931	rs634277	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q14.2	NR	rs634277-A	0.6678	2E-23		0.0607	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1248	chr11	86905020	86905021	rs75937733	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.2	TMEM135	rs75937733-A	0.924793	1E-20		0.0331398	[0.026-0.04] unit decrease	NR [13737936] (imputed)	N
1248	chr11	86908382	86908383	rs117450504	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TMEM135	rs117450504-?	NR	1E-10	(female)	0.657155	[NR] unit increase	Affymetrix [NR] (imputed)	N
1248	chr11	86934373	86934374	rs377062541	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs377062541-?	NR	2E-50		0.0502245	[0.043-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
1248	chr11	86934373	86934374	rs377062541	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs377062541-AT	0.887595	6E-10	(women)	0.0490352	[0.034-0.064] unit decrease	NR [17166351] (imputed)	N
1248	chr11	86934373	86934374	rs377062541	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs377062541-AT	0.886665	6E-17		0.0486552	[0.037-0.06] unit decrease	NR [17166351] (imputed)	N
1248	chr11	86934373	86934374	rs377062541	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q14.2	TMEM135	rs377062541-AT	0.885599	4E-8	(men)	0.0465363	[0.03-0.063] unit decrease	NR [17166351] (imputed)	N
1248	chr11	86968249	86968250	rs10898646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q14.2	TMEM135	rs10898646-G	0.597483	4E-8	(40 ms)	0.0308267	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1248	chr11	86968249	86968250	rs10898646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q14.2	TMEM135	rs10898646-G	0.597483	4E-8	(38 ms)	0.030974	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1248	chr11	86968249	86968250	rs10898646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q14.2	TMEM135	rs10898646-G	0.597483	4E-8	(32 ms)	0.0313248	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1248	chr11	86968249	86968250	rs10898646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q14.2	TMEM135	rs10898646-G	0.597483	2E-8	(36 ms)	0.0312497	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1248	chr11	86968249	86968250	rs10898646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q14.2	TMEM135	rs10898646-G	0.597483	2E-8	(34 ms)	0.0318087	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1248	chr11	86979830	86979831	rs11235059	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.2	NR	rs11235059-?	NR	2E-11				Affymetrix [NR]	N
1248	chr11	86983830	86983831	rs12293231	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.2		rs12293231-?	NR	2E-19		0.0183634	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1248	chr11	86995657	86995658	rs674017	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	11q14.2	TMEM135	rs674017-C	0.06	3E-6	(dominant)	0.15	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
1249	chr11	87125437	87125438	rs6592362	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q14.2	intergenic	rs6592362-A	0.248	2E-8		1.083	[1.049-1.117]	Affymetrix, Illumina [1230000] (imputed)	N
1249	chr11	87129234	87129235	rs76940523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q14.2		rs76940523-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1250	chr11	87192623	87192624	rs7358476	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to perphenazine in schizophrenia	193 Han Chinese ancestry cases	NA	11q14.2	TMEM135	rs7358476-A	NR	9E-6		11.4794	[6.55-16.41] unit decrease	Illumina [6097251] (imputed)	N
1250	chr11	87197068	87197069	rs10898707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q14.2		rs10898707-C	NR	1E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1250	chr11	87219092	87219093	rs7113624	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	11q14.2	TMEM135, RAB38	rs7113624-?	NR	6E-12		0.0348	[0.025-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1250	chr11	87219092	87219093	rs7113624	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	11q14.2	TMEM135, RAB38	rs7113624-?	NR	4E-8		0.02794	[0.018-0.038] unit decrease	Illumina [6108953] (imputed)	N
1250	chr11	87280070	87280071	rs11235208	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 155)	19,670 European ancestry individuals	NA	11q14.2		rs11235208-?	NR	3E-8				NR [9705931] (imputed)	N
1251	chr11	87304766	87304767	rs7924703	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.2	NR	rs7924703-C	0.665	4E-8		0.00624224	[0.004-0.0085] unit increase	NR [9732723] (imputed)	N
1252	chr11	87521933	87521934	rs112923305	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.2	NR	rs112923305-?	NR	7E-6		4.493	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1253	chr11	87655764	87655765	rs117977426	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	11q14.2		rs117977426-T	0.011123	4E-7		2.37023	NR	Affymetrix [7846216] (imputed)	N
1253	chr11	87674034	87674035	rs7925150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.2		rs7925150-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1254	chr11	87777123	87777124	rs10765497	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q14.2	NR	rs10765497-A	0.318	1E-6	(IFNAR2_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1255	chr11	87819426	87819427	rs1386330	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	11q14.2	RAB38	rs1386330-?	0.13	2E-6			[NR]	Illumina [551642]	N
1255	chr11	87849684	87849685	rs35220627	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.2	NR	rs35220627-T	0.01045	4E-12	(ME1)	0.1743	NR unit decrease	Illumina [1671387] (imputed)	N
1255	chr11	87858163	87858164	rs116951285	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine levels	623 Croatian ancestry individuals	NA	11q14.2	RAB38	rs116951285-C	NR	6E-8		1.17	[0.74-1.60] nmol/L decrease	NR [8753628] (imputed)	N
1255	chr11	87876910	87876911	rs302668	24943344	Ferrari R	2014-07-01	Lancet Neurol	Frontotemporal dementia and its subtypes: a genome-wide association study.	Frontotemporal dementia	1,377 European ancestry behavioural variant cases, 308 European ancestry Semantic dementia cases, 269 European ancestry Progressive nonfluent aphasia cases, 200 European ancestry Frontotremporal dementia with motor neuron disease cases, up to 4,308 European ancestry controls	690 European ancestry behavioural variant cases, 190 European ancestry Semantic dementia cases, 221 European ancestry Progressive nonfluent aphasia cases, 94 European ancestry Frontotremporal dementia with motor neuron disease cases, 177 European ancestry Frontotemporal lobar degeneration cases, up to 5,094 European ancestry controls	11q14.2	RAB38	rs302668-T	0.708	2E-7	(Behavioural variant FTD)	1.23	[1.09-1.41]	Illumina [6026385] (imputed)	N
1255	chr11	87891386	87891387	rs302655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q14.2		rs302655-T	NR	2E-16		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1255	chr11	87901235	87901236	rs302650	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q14.2	NR	rs302650-A	0.4329	3E-16		0.001847	[0.0014-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1255	chr11	87901235	87901236	rs302650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11q14.2	NR	rs302650-A	NR	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1255	chr11	87905989	87905990	rs16913594	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	11q14.2	RAB38	rs16913594-C	NR	2E-9	(k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_xylanisolvens)	5.9659324	NR Z-score increase	Illumina [8100000] (imputed)	N
1255	chr11	87907711	87907712	rs9666728	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.2		rs9666728-T	0.4427	7E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1255	chr11	87907711	87907712	rs9666728	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.2	Intergenic	rs9666728-T	0.4427	6E-10	(MTAG)	0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1255	chr11	87920916	87920917	rs80150794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.2		rs80150794-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1256	chr11	87949531	87949532	rs682457	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	11q14.2	MIR3166	rs682457-?		1E-6		1.11	[0.68-1.54] unit increase	Illumina [1197702]	N
1256	chr11	87965220	87965221	rs584368	30945699	Wei J	2019-04-04	Med Sci Monit	Genome-Wide Association Study Identifies a Genetic Prediction Model for Postoperative Survival in Patients with Hepatocellular Carcinoma.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry cases	758 East Asian ancestry cases	11q14.2	intergenic	rs584368-?	NR	2E-14				Affymetrix [630573]	N
1256	chr11	87965220	87965221	rs584368	30945673	Prasad G	2019-03-01	J Genet	Genomewide association study for C-reactive protein in Indians replicates known associations of common variants.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry individuals	758 East Asian ancestry individuals	11q14.2	intergenic	rs584368-?	NR	2E-14				Affymetrix [630573]	N
1256	chr11	87983528	87983529	rs146293495	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	11q14.2	NR	rs146293495-C	NR	6E-7		5.01	z score decrease	NR [9015039] (imputed)	N
1256	chr11	88008250	88008251	rs649529	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in diabetes	up to 5,825 European ancestry cases	up to 1,962 European ancestry cases	11q14.2	RAB38	rs649529-T	0.43	6E-7		0.14	[0.081-0.199] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1256	chr11	88027208	88027209	rs3888798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSC	5,363 Icelandic ancestry individuals	NA	11q14.2		rs3888798-C	0.0488	8E-45		0.591067	[0.51-0.67] unit decrease	Illumina [7506463] (imputed)	N
1256	chr11	88033660	88033661	rs217116	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11q14.2	CTSC	rs217116-A	0.1726	5E-19	(CTSC)	0.61894	[0.48-0.76] unit decrease	Illumina [8683751] (imputed)	N
1256	chr11	88036838	88036839	rs217120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.2		rs217120-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1256	chr11	88043617	88043621	rs199699082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11q14.2	CTSC	rs199699082-A	0.093514	2E-10		0.02443766	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr11	88053978	88053979	rs217053	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11q14.2	CTSC	rs217053-T	0.2112	3E-19	(CTSC)	0.5749	[0.45-0.7] unit decrease	Illumina [8683751] (imputed)	N
1256	chr11	88066713	88066714	rs55897509	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q14.2	CTSC	rs55897509-A	0.91765625	2E-107	(CTSC, 13730_18_3)	0.9264761	[0.85-1.01] unit decrease	Illumina [> 1000000] (imputed)	N
1256	chr11	88069473	88069474	rs113755660	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.2	NR	rs113755660-G	0.089736	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
1256	chr11	88070109	88070110	rs72966841	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSC	5,363 Icelandic ancestry individuals	NA	11q14.2		rs72966841-T	0.08257	2E-196		0.941759	[0.88-1] unit increase	Illumina [7506463] (imputed)	N
1256	chr11	88077659	88077660	rs487127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q14.2		rs487127-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1256	chr11	88077727	88077728	rs72966858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q14.2		rs72966858-C	NR	7E-12		0.0274	[0.02-0.035] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1257	chr11	88083638	88083639	rs17756204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q14.2		rs17756204-A	0.092831	8E-14		0.028493108	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr11	88083638	88083639	rs17756204	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11q14.2	CTSC	rs17756204-A	0.095	3E-25	(CTSC)	0.95291	[0.77-1.13] unit increase	Illumina [8683751] (imputed)	N
1257	chr11	88084748	88084749	rs184999451	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - elleste duet conti tablet (UKB data field 20003_1141156644)	923 European ancestry cases, 246,585 European ancestry controls	NA	11q14.2		rs184999451-A	0.003743	3E-9		2.89	[1.93-3.85] unit increase	NR [11842647] (imputed)	N
1257	chr11	88110247	88110248	rs61901730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.2		rs61901730-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1257	chr11	88119531	88119532	rs1451608	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	11q14.2		rs1451608-G	NR	7E-6	(GLM)	3.2311	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1257	chr11	88134562	88134563	rs55633855	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q14.2	NR	rs55633855-G	0.19	5E-6	(Japanese, Male)	0.033	[0.019-0.047] unit increase	Illumina [6108953] (imputed)	N
1257	chr11	88155277	88155278	rs79731025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.2		rs79731025-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1257	chr11	88169598	88169599	rs72953026	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	11q14.2		rs72953026-T	0.18	2E-6		0.35	[0.23-0.54]	Illumina [9175654] (imputed)	N
1257	chr11	88174967	88174968	rs11019935	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q14.2	NR	rs11019935-?	NR	3E-7	(EA)	0.8885	[0.55-1.22] unit decrease	Illumina [up to 11892802] (imputed)	N
1257	chr11	88174967	88174968	rs11019935	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11q14.2	NR	rs11019935-?	NR	3E-7	(EA)	0.7379	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1258	chr11	88222153	88222154	rs308774	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q14.2	NR	rs308774-T	0.203794829311994	8E-9		0.009025202	[0.006-0.0121] unit decrease	NR [NR]	N
1258	chr11	88226395	88226396	rs7937452	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q14.2		rs7937452-?	NR	9E-6		1.16822	[1.1-1.24]	NR [674885]	N
1258	chr11	88226395	88226396	rs7937452	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.2	NR	rs7937452-T	NR	5E-17		0.102	[0.033-0.171] unit increase	Affymetrix [8351141] (imputed)	N
1258	chr11	88227697	88227698	rs308805	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q14.2	NR	rs308805-T	0.202985884354011	1E-9		0.006946498	[0.0047-0.0092] unit decrease	NR [NR]	N
1258	chr11	88227697	88227698	rs308805	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q14.2	NR	rs308805-T	0.202985884354011	2E-9		0.008498817	[0.0057-0.0113] unit decrease	NR [NR]	N
1258	chr11	88227697	88227698	rs308805	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q14.2	NR	rs308805-T	0.202985884354011	2E-9		0.011041663	[0.0075-0.0146] unit decrease	NR [NR]	N
1258	chr11	88227697	88227698	rs308805	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q14.2	NR	rs308805-T	0.202985884354011	1E-9		0.0070867473	[0.0048-0.0094] unit decrease	NR [NR]	N
1258	chr11	88289219	88289220	rs75943957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.2		rs75943957-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1258	chr11	88297739	88297740	rs1553132	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q14.2	NR	rs1553132-G	NR	5E-9		0.852	unit increase	Affymetrix [14661600] (imputed)	N
1258	chr11	88297739	88297740	rs1553132	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	11q14.2		rs1553132-G	0.2586	7E-9		0.01617	[0.011-0.022] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1258	chr11	88303776	88303777	rs114223427	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	11q14.2	GRM5	rs114223427-?	NR	9E-6		0.619	[0.3-0.94] unit decrease	Illumina [at least 13000000] (imputed)	N
1258	chr11	88309305	88309306	rs11020496	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.2	NR	rs11020496-?	NR	1E-6				Affymetrix [NR]	N
1258	chr11	88321723	88321724	rs16914280	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	11q14.2	intergenic	rs16914280-?	NR	3E-7	(progression)			Illumina [NR]	N
1259	chr11	88354363	88354364	rs57700751	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	11q14.3	GRM5	rs57700751-C	0.068	3E-8		1.4	NR	Illumina [at least 870261] (imputed)	N
1259	chr11	88358543	88358544	rs7481199	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.3		rs7481199-?	NR	2E-12		1.08956	[1.07-1.11]	NR [685523]	N
1259	chr11	88358543	88358544	rs7481199	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	11q14.3		rs7481199-?	NR	3E-6		1.03723	[1.02-1.05]	NR [688737]	N
1259	chr11	88420836	88420837	rs12792431	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs12792431-C	NR	4E-71		0.179	[0.097-0.261] unit increase	Affymetrix [8351141] (imputed)	N
1259	chr11	88454168	88454169	rs188092667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.3		rs188092667-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1259	chr11	88454168	88454169	rs188092667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs188092667-?	NR	4E-34				NR [~ 8900000] (imputed)	N
1259	chr11	88456826	88456827	rs1532548	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q14.3		rs1532548-?	NR	1E-8		1.20841	[1.14-1.27]	NR [674885]	N
1259	chr11	88456826	88456827	rs1532548	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		11q14.3	NR	rs1532548-T	NR	9E-6		1.1181755	[1.06-1.17]	Affymetrix [5734850] (imputed)	N
1259	chr11	88472368	88472369	rs1903844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q14.3		rs1903844-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1259	chr11	88472481	88472482	rs1903845	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q14.3	NR	rs1903845-T	0.357668230795917	1E-11		0.009584425	[0.0068-0.0123] unit decrease	NR [NR]	N
1260	chr11	88477213	88477214	rs6483414	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q14.3	NR	rs6483414-C	0.6437	3E-8		0.0069	[0.0045-0.0093] unit increase	NR [7666894] (imputed)	N
1260	chr11	88477339	88477340	rs6483416	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	11q14.3		rs6483416-T	NR	9E-8		1.1026574	NR	Affymetrix [7846216] (imputed)	N
1260	chr11	88477339	88477340	rs6483416	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q14.3	GRM5	rs6483416-G	NR	4E-8		0.0096017	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
1260	chr11	88511523	88511524	rs7118677	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	11q14.3	GRM5	rs7118677-?	NR	8E-10				Illumina [181139] (imputed)	N
1260	chr11	88511523	88511524	rs7118677	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	11q14.3	GRM5	rs7118677-?	NR	1E-9				Illumina [8896142] (imputed)	N
1260	chr11	88511523	88511524	rs7118677	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	11q14.3	GRM5	rs7118677-?	NR	3E-6				Illumina [8896142] (imputed)	N
1260	chr11	88529455	88529456	rs3862367	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q14.3	NR	rs3862367-T	0.311514166787463	2E-12		0.011438954	[0.0083-0.0146] unit decrease	NR [NR]	N
1260	chr11	88536450	88536451	rs71469216	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs71469216-C	NR	6E-84		0.191	[0.11-0.28] unit increase	Affymetrix [8351141] (imputed)	N
1260	chr11	88552632	88552633	rs148065054	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q14.3	GRM5	rs148065054-T	0.02513	8E-17		1.214	NR	Affymetrix [9154080] (imputed)	N
1260	chr11	88557990	88557991	rs10831496	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	11q14.3	GRM5	rs10831496-G	NR	9E-8		0.168	[0.11-0.23] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
1260	chr11	88557990	88557991	rs10831496	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	11q14.3	GRM5	rs10831496-G	NR	5E-9		0.14	[0.10-0.18] tanning ability score decrease	Illumina [528173]	N
1260	chr11	88574222	88574223	rs2102027	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11q14.3	GRM5	rs2102027-?	NR	9E-9		4.20386E-4	[-0.00442-0.00526] unit decrease	Affymetrix [25921788] (imputed)	N
1260	chr11	88574222	88574223	rs2102027	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11q14.3	GRM5	rs2102027-?	NR	9E-9		0.0141064	[0.0093-0.0189] unit increase	Affymetrix [25921788] (imputed)	N
1260	chr11	88577005	88577006	rs11021570	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.3		rs11021570-?	NR	8E-9		1.06559	[1.04-1.09]	NR [685523]	N
1260	chr11	88587955	88587956	rs598952	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	11q14.3	TYR	rs598952-?	NR	2E-8				Illumina [9143600] (imputed)	N
1260	chr11	88588785	88588786	rs645327	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.3	NR	rs645327-T	0.672	1E-7		0.00607522	[0.0038-0.0083] unit increase	NR [9732723] (imputed)	N
1260	chr11	88598443	88598444	rs2221119	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q14.3	NR	rs2221119-C	0.443	2E-9		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1260	chr11	88598645	88598646	rs613597	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11q14.3	GRM5	rs613597-?	NR	4E-9		0.014878	[0.0099-0.0198] unit increase	Affymetrix [25921788] (imputed)	N
1261	chr11	88614323	88614324	rs10160510	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	11q14.3	GRM5	rs10160510-T	NR	3E-10		0.247758	[0.17-0.33] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
1261	chr11	88614855	88614856	rs633918	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	11q14.3	GRM5	rs633918-A	0.619	2E-8		1.1433531	1.09241478-1.19666672	Affymetrix, Illumina [7701827] (imputed)	N
1261	chr11	88614855	88614856	rs633918	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment	2,893 British ancestry cases, 360,233 British ancestry controls	NA	11q14.3	GRM5	rs633918-?	0.619145	5E-6		1.1313127	[1.07393689-1.19175396]	Affymetrix, Illumina [7701827] (imputed)	N
1261	chr11	88621777	88621778	rs181563076	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.3	NR	rs181563076-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1261	chr11	88653705	88653706	rs4753772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs4753772-?	NR	7E-30				NR [~ 8900000] (imputed)	N
1261	chr11	88668139	88668140	rs518167	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	11q14.3	GRM5	rs518167-?		2E-6		2.24	[NR]	Illumina [452367]	N
1261	chr11	88670048	88670049	rs4121827	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs4121827-C	NR	1E-79		0.187	[0.1-0.27] unit increase	Affymetrix [8351141] (imputed)	N
1261	chr11	88688232	88688233	rs597462	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q14.3	NR	rs597462-C	0.520534775642445	2E-19		0.008276218	[0.0065-0.0101] unit decrease	NR [NR]	N
1261	chr11	88689952	88689953	rs674437	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11q14.3	NR	rs674437-G	0.4843	9E-9		0.01098	[0.0072-0.0147] unit increase	NR [8968716] (imputed)	N
1261	chr11	88689952	88689953	rs674437	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q14.3	NR	rs674437-A	0.521094692748009	2E-14		0.010211199	[0.0076-0.0128] unit decrease	NR [NR]	N
1261	chr11	88689952	88689953	rs674437	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q14.3	NR	rs674437-A	0.521094692748009	9E-15		0.008528544	[0.0064-0.0107] unit decrease	NR [NR]	N
1261	chr11	88689952	88689953	rs674437	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q14.3	NR	rs674437-A	NR	8E-10		6.146	z score decrease	Affymetrix [10847151] (imputed)	N
1261	chr11	88689952	88689953	rs674437	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q14.3	GRM5	rs674437-A	0.485057	3E-10		6.31	z score decrease	NR [10847151] (imputed)	N
1261	chr11	88690382	88690383	rs182798317	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11q14.3		rs182798317-T	NR	4E-6		1.45878		Affymetrix, Illumina [62056310] (imputed)	N
1261	chr11	88693072	88693073	rs604551	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q14.3	intergenic	rs604551-T	0.54747	3E-10		6.319	z score decrease	Illumina [18485882] (imputed)	N
1261	chr11	88695845	88695846	rs1150313	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q14.3	NR	rs1150313-?		4E-10				NR [520857]	N
1261	chr11	88695845	88695846	rs1150313	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	11q14.3	NR	rs1150313-A	NR	1E-9		6.09	z score increase	Affymetrix [10847151] (imputed)	N
1261	chr11	88695882	88695883	rs564567	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q14.3	GRM5	rs564567-C	NR	2E-8		0.0098376	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
1261	chr11	88705234	88705235	rs537635	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	11q14.3	NR	rs537635-T	0.484	6E-10		1.033	[1.02-1.04]	NR [5276842] (imputed)	N
1261	chr11	88726464	88726465	rs12270599	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	11q14.3	GRM5	rs12270599-T	0.492	7E-20		0.020543113	[0.015-0.026] unit increase	NR [9417325] (imputed)	N
1261	chr11	88732955	88732956	rs10831546	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q14.3	NR	rs10831546-T	0.5048	2E-11		0.028490389	[0.02-0.037] unit increase	NR [NR]	N
1261	chr11	88734122	88734123	rs10765820	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	11q14.3	NR	rs10765820-A	NR	2E-9		0.01406	NR unit increase	NR [7259579]	N
1262	chr11	88741659	88741660	rs5016282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q14.3	NR	rs5016282-G	NR	2E-21		0.0325	[0.026-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr11	88741659	88741660	rs5016282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q14.3	NR	rs5016282-G	NR	3E-27		0.0386	[0.032-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr11	88741659	88741660	rs5016282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	11q14.3	NR	rs5016282-G	NR	2E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr11	88741659	88741660	rs5016282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q14.3	NR	rs5016282-G	NR	4E-14		0.0271	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr11	88741659	88741660	rs5016282	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11q14.3	GRM5	rs5016282-?	NR	3E-9		0.05169951	NR unit increase	Affymetrix [464137]	N
1262	chr11	88741659	88741660	rs5016282	22012869	Hinney A	2011-10-19	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study in German patients with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	495 European ancestry child and adolescent cases, 1,300 European ancestry adult controls	1,023 European ancestry individuals from 320 families, 2455 European ancestry cases and 896 European ancestry controls from 2,064 trios	11q14.3	GRM5	rs5016282-A	NR	1E-6				Illumina [487484]	N
1262	chr11	88743207	88743208	rs4753209	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11q14.3		rs4753209-?	NR	3E-15		0.0241	unit decrease	NR [NR]	N
1262	chr11	88743207	88743208	rs4753209	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11q14.3	NR	rs4753209-T	NR	4E-9		1.0309278		NR [NR] (imputed)	N
1262	chr11	88744424	88744425	rs7932640	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	11q14.3	NR	rs7932640-T	0.45	5E-6		1.18	[NR]	Affymetrix [87696888] (imputed)	N
1262	chr11	88744424	88744425	rs7932640	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q14.3	NR	rs7932640-T	0.4417	3E-25		1.023	[1.019-1.027]	NR [8098588] (imputed)	N
1262	chr11	88745926	88745927	rs111258505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.3		rs111258505-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1262	chr11	88748161	88748162	rs10501696	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q14.3	NR	rs10501696-G	0.4987	7E-11		0.0079	[0.0055-0.0103] unit decrease	NR [7666894] (imputed)	N
1262	chr11	88753844	88753845	rs7126679	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	11q14.3	NR	rs7126679-C	0.5633	2E-8		0.0139	[0.009-0.0188] unit decrease	Illumina [NR] (imputed)	N
1262	chr11	88756712	88756713	rs36006427	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	11q14.3	NR	rs36006427-A	NR	3E-8		5.554	NR z score increase	NR [NR]	N
1262	chr11	88762041	88762042	rs10830201	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	11q14.3	NR	rs10830201-A	0.391	2E-10		0.0123	[0.0086-0.016] unit decrease	Illumina [NR] (imputed)	N
1262	chr11	88762041	88762042	rs10830201	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	11q14.3	NR	rs10830201-A	0.3917	3E-11		0.0149	[0.011-0.019] unit increase	Illumina [NR] (imputed)	N
1262	chr11	88762041	88762042	rs10830201	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11q14.3	NR	rs10830201-A	0.3938	6E-6		0.01391062	[0.0079-0.0199] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1262	chr11	88762059	88762060	rs10741299	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	11q14.3	NR	rs10741299-C	0.5646	2E-9		0.017	[0.012-0.022] unit decrease	Illumina [NR] (imputed)	N
1262	chr11	88768896	88768897	rs2212333	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	11q14.3	NR	rs2212333-A		8E-9		0.0242113	[0.016-0.032] unit increase	NR [6694342]	N
1262	chr11	88772300	88772301	rs150319166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs150319166-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1262	chr11	88776859	88776860	rs147202944	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11q14.3		rs147202944-G	NR	2E-6		1.41694		Affymetrix, Illumina [62056310] (imputed)	N
1262	chr11	88799730	88799731	rs34749698	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs34749698-C	NR	4E-82		0.188	[0.1-0.27] unit increase	Affymetrix [8351141] (imputed)	N
1262	chr11	88814869	88814870	rs7127487	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	11q14.3	NR	rs7127487-A	NR	2E-8		5.595	NR z score decrease	NR [NR]	N
1262	chr11	88831336	88831337	rs10765186	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q14.3	NR	rs10765186-T	0.507355067027869	4E-13		0.009247645	[0.0068-0.0117] unit decrease	NR [NR]	N
1262	chr11	88856781	88856782	rs1942486	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.3		rs1942486-?	NR	8E-11		1.07621	[1.05-1.1]	NR [685523]	N
1262	chr11	88861589	88861590	rs11018488	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	11q14.3	NR	rs11018488-A	NR	5E-10		0.008989	[0.0062-0.0118] unit increase	NR [11010159] (imputed)	N
1262	chr11	88861589	88861590	rs11018488	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	11q14.3	NR	rs11018488-A	NR	5E-10		0.00678037	[0.0046-0.0089] unit increase	NR [11010159] (imputed)	N
1262	chr11	88861589	88861590	rs11018488	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	11q14.3	NR	rs11018488-A	NR	2E-8	(adjusted for BMI)	0.00614	[0.004-0.0083] unit increase	NR [11010159] (imputed)	N
1263	chr11	88874151	88874152	rs10830220	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	11q14.3	NR	rs10830220-?		1E-9				NR [11140414]	N
1263	chr11	88874151	88874152	rs10830220	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q14.3	NR	rs10830220-C	NR	3E-10		6.307	z score decrease	Affymetrix [10847151] (imputed)	N
1263	chr11	88874151	88874152	rs10830220	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	11q14.3	NR	rs10830220-C	NR	1E-9		6.096	z score decrease	Affymetrix [10847151] (imputed)	N
1263	chr11	88874151	88874152	rs10830220	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q14.3	TYR	rs10830220-C	0.497023	7E-10		6.17	z score decrease	NR [10847151] (imputed)	N
1263	chr11	88874151	88874152	rs10830220	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q14.3	intergenic	rs10830220-C	0.50298	8E-10		6.148	z score decrease	Illumina [18485882] (imputed)	N
1263	chr11	88874205	88874206	rs140411588	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q14.3		rs140411588-?	NR	6E-6		1.1379324	[1.07616744388194-1.20324221541255]	Illumina [up to 7827597] (imputed)	N
1263	chr11	88874968	88874969	rs4121744	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	11q14.3	NR	rs4121744-G		7E-6				Illumina [458865]	N
1263	chr11	88887217	88887218	rs190581995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.3		rs190581995-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1263	chr11	88890450	88890451	rs61903412	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q14.3	NR	rs61903412-A	0.526702635205318	1E-13		0.011356259	[0.0084-0.0144] unit decrease	NR [NR]	N
1263	chr11	88891113	88891114	rs10830228	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.3	TYR	rs10830228-A	0.42	9E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	11q14.3		rs1042602-A	NR	3E-9		0.054	[0.036-0.072] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.3	NR	rs1042602-A	0.3651	7E-9				NR [9056863] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	11q14.3	NR	rs1042602-A	0.37	4E-22		0.36	[0.28-0.44] unit decrease	Affymetrix [9231066] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	11q14.3	NR	rs1042602-A	0.37	4E-22		0.36	[0.28-0.44] unit decrease	Affymetrix [9231066] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	11q14.3	NR	rs1042602-A	0.37	2E-11		0.33	[0.23-0.43] unit decrease	Affymetrix [9231066] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	11q14.3		rs1042602-?	NR	3E-24				NR [9705931] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	11q14.3	TYR	rs1042602-?	NR	9E-10		0.227	[0.15-0.30] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	11q14.3	TYR	rs1042602-?	NR	9E-10				Illumina [8896142] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	11q14.3	TYR	rs1042602-?	NR	2E-6				Illumina [8896142] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs1042602-?	NR	3E-279				NR [~ 8900000] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q14.3	TYR	rs1042602-?	NR	1E-15		0.5744	[0.44-0.71] unit increase	Affymetrix [11100000] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11q14.3	TYR	rs1042602-A	0.3674	2E-27		1.15	NR	Affymetrix [9154080] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q14.3	TYR	rs1042602-A	0.3674	2E-200		1.325	NR	Affymetrix [9154080] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	11q14.3	LOC107984363, TYR	rs1042602-?		3E-8	(Skin color)	0.0866	[0.056-0.117] unit increase	Illumina [9499600] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	11q14.3	TYR	rs1042602-A	0.356	1E-100		0.065	[0.059-0.071] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q14.3	TYR	rs1042602-C	0.6312	2E-12		0.096	[0.068-0.124] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1263	chr11	88911695	88911696	rs1042602	17999355	Stokowski RP	2007-10-15	Am J Hum Genet	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	11q14.3	TYR	rs1042602-C	0.84	4E-10		4.36	[2.64-7.20]	Perlegen [1502205]	N
1263	chr11	88911695	88911696	rs1042602	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	11q14.3	TYR	rs1042602-C	0.67	2E-11		1.32	[1.17-1.49]	Illumina [317511]	N
1263	chr11	88913662	88913663	rs621313	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q14.3	NR	rs621313-G	0.4908	3E-10		0.0074	[0.005-0.0098] unit increase	NR [7666894] (imputed)	N
1263	chr11	88913662	88913663	rs621313	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q14.3	TYR	rs621313-A	0.5099	3E-12		0.0929	[0.065-0.12] unit increase	Affymetrix [~ 11900000] (imputed)	N
1263	chr11	88913662	88913663	rs621313	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	11q14.3	TYR	rs621313-?	0.49	4E-6	(EA)	1.15	[1.09-1.2]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1263	chr11	88935087	88935088	rs12285584	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q14.3		rs12285584-T	0.37	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1263	chr11	88935087	88935088	rs12285584	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11q14.3	GRM5, TYR, NOX4	rs12285584-?	NR	9E-9	(female)	0.0198806	[0.013-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
1263	chr11	88953818	88953819	rs1939252	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q14.3	NR	rs1939252-G	0.47616787942388	5E-13		0.008609138	[0.0063-0.0109] unit increase	NR [NR]	N
1263	chr11	88953818	88953819	rs1939252	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q14.3	NR	rs1939252-G	0.47616787942388	1E-12		0.0072884616	[0.0053-0.0093] unit increase	NR [NR]	N
1263	chr11	88970137	88970138	rs7358418	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	11q14.3	NR	rs7358418-T		6E-9		0.0260823	[0.017-0.035] unit decrease	NR [6694342]	N
1263	chr11	88976932	88976933	rs10830244	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q14.3	intergenic	rs10830244-T	0.58542	5E-9		5.835	z score decrease	Illumina [18485882] (imputed)	N
1263	chr11	88978544	88978545	rs4601783	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q14.3	NR	rs4601783-A	0.497979	5E-8		5.46	z score decrease	NR [10847151] (imputed)	N
1264	chr11	89004893	89004894	rs645592	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	11q14.3	NR	rs645592-T	NR	3E-8		5.571	z score decrease	Affymetrix [10847151] (imputed)	N
1264	chr11	89005252	89005253	rs1847134	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q14.3		rs1847134-?	NR	9E-12		1.19695	[1.15-1.25]	NR [674885]	N
1264	chr11	89005252	89005253	rs1847134	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	11q14.3	TYR	rs1847134-?		6E-8		1.25	[1.15-1.35]	Affymetrix, Illumina [1579307] (imputed)	N
1264	chr11	89005252	89005253	rs1847134	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	11q14.3	TYR	rs1847134-A	0.68	1E-15	(green eyes)	1.58	[NR]	Illumina [535076]	N
1264	chr11	89011045	89011046	rs1393350	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.3		rs1393350-?	NR	3E-24		1.12581	[1.1-1.15]	NR [685523]	N
1264	chr11	89011045	89011046	rs1393350	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	11q14.3		rs1393350-?	NR	1E-13		1.05717	[1.04-1.07]	NR [688737]	N
1264	chr11	89011045	89011046	rs1393350	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	11q14.3	TYR	rs1393350-A	0.289	5E-24		1.165	NR	Affymetrix [9154080] (imputed)	N
1264	chr11	89011045	89011046	rs1393350	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	11q14.3	TYR	rs1393350-A	0.289	3E-71		1.16	NR	Affymetrix [9154080] (imputed)	N
1264	chr11	89011045	89011046	rs1393350	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	11q14.3	TYR	rs1393350-A	0.27	4E-13		1.17	[1.12-1.22]	Illumina [at least 560000] (imputed)	N
1264	chr11	89011045	89011046	rs1393350	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	11q14.3	TYR	rs1393350-A	0.28	2E-13		1.3	[1.21-1.39]	Illumina [594997]	N
1264	chr11	89011045	89011046	rs1393350	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	11q14.3	TYR	rs1393350-A	0.27	3E-9	(eye color)	0.28	[NR] unit decrease	Illumina [535076]	N
1264	chr11	89011045	89011046	rs1393350	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	11q14.3	TYR	rs1393350-G	0.733	2E-18		1.53	[1.39-1.68]	Illumina [520460]	N
1264	chr11	89011045	89011046	rs1393350	19578364	Bishop DT	2009-07-05	Nat Genet	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	11q14.3	TYR	rs1393350-A	0.27	2E-14		1.29	[1.21-1.38]	Illumina [~ 317000]	N
1264	chr11	89011045	89011046	rs1393350	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	11q14.3	TYR	rs1393350-A	NR	2E-13		0.19	[0.13-0.25] tanning ability score increase	Illumina [528173]	N
1264	chr11	89011045	89011046	rs1393350	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Skin sensitivity to sun	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	11q14.3	TYR	rs1393350-A	0.27	2E-6		1.26	[1.11-1.43]	Illumina [317511]	N
1264	chr11	89011045	89011046	rs1393350	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	11q14.3	TYR	rs1393350-A	0.23	3E-12		1.52	[1.28-1.81]	Illumina [317511]	N
1264	chr11	89014233	89014234	rs148811949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.3	NR	rs148811949-C	0.01045	2E-8	(RMDN3)	0.02364	NR unit increase	Illumina [1671387] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	11q14.3		rs1126809-A	NR	7E-43		0.1443	[0.12-0.16] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	29.21	2E-21	(additive)	1.05	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	11q14.3		rs1126809-A	0.2788532	9E-11		1.1		Affymetrix [15611556] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	11q14.3		rs1126809-G	0.721	2E-255	(EA)	0.285	[0.27-0.3] unit increase	Illumina [11532091] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.303865	5E-33		0.13851997	[0.12-0.16] unit increase	Affymetrix [7260263] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	11q14.3		rs1126809-?	NR	5E-15		7.82846	z score increase	Affymetrix [NR] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	11q14.3		rs1126809-A	NR	5E-19		1.1806375	NR	Affymetrix [7846216] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	11q14.3		rs1126809-A	NR	4E-16		1.1792454	[1.13-1.23]	Affymetrix [7846216] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	11q14.3	TYR	rs1126809-G	0.7133	8E-13				NR [7320282]	N
1264	chr11	89017960	89017961	rs1126809	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11q14.3	TYR	rs1126809-G	0.757176	1E-48				Affymetrix, Illumina [NR] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11q14.3	TYR	rs1126809-G	0.757176	4E-199				Affymetrix, Illumina [NR] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.2428	4E-70		1.2012012	NR	Affymetrix, Illumina [NR] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.279	2E-38		0.15	[0.13-0.17] unit increase	NR [13607369] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	11q14.3	TYR	rs1126809-A	0.3	8E-9		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.242824	2E-23		1.17	[1.14-1.20]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.305456	9E-62		1.1627907	[1.14-1.18]	Affymetrix [7600000] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	11q14.3	TYR	rs1126809-A	0.242824	7E-51		1.14	[1.13-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	11q14.3	TYR	rs1126809-?	NR	7E-13				Illumina [181139] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	11q14.3	TYR	rs1126809-?	NR	3E-9				Illumina [8896142] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	11q14.3	TYR	rs1126809-?	NR	6E-6				Illumina [8896142] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	11q14.3	TYR	rs1126809-?	NR	5E-6				Illumina [8896142] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.3		rs1126809-?	NR	4E-280				NR [~ 8900000] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	11q14.3	LOC107984363, TYR	rs1126809-?		4E-9	(phototype score)	1.672	[1.12-2.23] unit decrease	Illumina [9499600] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	11q14.3	LOC107984363, TYR	rs1126809-?		4E-8	(Fitzpatrick phototype score)	0.08428	[0.054-0.114] unit decrease	Illumina [9499600] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	TYR	rs1126809-A	NR	2E-172		0.257	[0.16-0.35] unit increase	Affymetrix [8351141] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11q14.3	TYR	rs1126809-G	0.7311	1E-43		1.497006	[1.41-1.59]	Illumina [8966411] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	11q14.3	TYR	rs1126809-A	0.28	3E-19		1.12	[NR]	Illumina [at least 560000] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	11q14.3	TYR	rs1126809-A	0.28	3E-14		1.16		Affymetrix, Illumina [at least 560000] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	11q14.3	TYR	rs1126809-A	0.28	2E-20		1.19	[1.15-1.24]	Affymetrix [9610468] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		11q14.3	TYR	rs1126809-G	NR	5E-21		0.12	[0.10-0.14] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
1264	chr11	89017960	89017961	rs1126809	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	11q14.3	TYR	rs1126809-G	NR	2E-8		0.6	[0.38-0.82] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1264	chr11	89019736	89019737	rs598769	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q14.3	NR	rs598769-T	0.47	9E-7		0.0058	[0.0034-0.0082] unit increase	NR [7666894] (imputed)	N
1264	chr11	89021064	89021065	rs3900053	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		11q14.3	TYR	rs3900053-T	NR	3E-10		1.1363636	[1.09-1.18]	Affymetrix [5734850] (imputed)	N
1264	chr11	89028042	89028043	rs10830253	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	11q14.3	TYR	rs10830253-?	NR	2E-11				Affymetrix, Illumina [7850345] (imputed)	N
1264	chr11	89029930	89029931	rs4121404	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q14.3	NR	rs4121404-T		4E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1264	chr11	89070496	89070497	rs1393347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q14.3		rs1393347-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1264	chr11	89074985	89074986	rs116461055	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	11q14.3	NR	rs116461055-?	NR	4E-12		15748.924	NR unit decrease	Illumina [2379855]	N
1264	chr11	89087642	89087643	rs317194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs317194-?	NR	3E-36				NR [~ 8900000] (imputed)	N
1264	chr11	89095720	89095721	rs16912266	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.3	NR	rs16912266-G	0.01742	1E-8	(CYP2E1)	0.3586	NR unit increase	Illumina [1671387] (imputed)	N
1264	chr11	89096756	89096757	rs3913535	30178632	Meng W	2018-09-04	Acta Ophthalmol	A genome-wide association study suggests new evidence for an association of the NADPH Oxidase 4 (NOX4) gene with severe diabetic retinopathy in type 2 diabetes.	Severe diabetic retinopathy in type 2 diabetes	560 Scottish ancestry proliferative or severe background retinopathy cases, 4,106 Scottish ancestry mild or no retinopathy controls	NA	11q14.3	NOX4	rs3913535-C	0.411	4E-9		1.55	[1.34-1.79]	Affymetrix, Illumina [6585471] (imputed)	N
1264	chr11	89104572	89104573	rs317162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.3	NR	rs317162-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1264	chr11	89112649	89112650	rs10830265	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.3	NOX4	rs10830265-A	0.187	8E-6	(Hcy )	0.02	[NR] umol/L increase	Illumina [899892]	N
1265	chr11	89138484	89138485	rs71469261	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Homocysteine levels	5,727 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	11q14.3		rs71469261-T	0.0593	2E-8		0.22	[0.14-0.3] unit decrease	Illumina [7880617]	N
1265	chr11	89148371	89148372	rs7130284	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	11q14.3	NOX4	rs7130284-T	0.07	2E-20		0.1242	[0.099-0.15] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
1265	chr11	89154353	89154354	rs16913221	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.3	NR	rs16913221-?	NR	4E-38				Affymetrix [NR]	N
1265	chr11	89182665	89182666	rs139341533	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	11q14.3	NOX4	rs139341533-A	0.0043	9E-8		1.102	[0.7-1.51] mmHg decrease	Affymetrix [NR] (imputed)	N
1265	chr11	89182665	89182666	rs139341533	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	11q14.3	NOX4	rs139341533-A	0.0043	1E-16		1.2548	[0.96-1.55] mmHg decrease	Affymetrix [NR] (imputed)	N
1265	chr11	89185460	89185461	rs142893386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	11q14.3		rs142893386-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1265	chr11	89192587	89192588	rs187169250	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Homocysteine levels	5,727 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	11q14.3		rs187169250-T	0.0677	3E-9		0.21	[0.13-0.29] unit decrease	Illumina [7880617]	N
1265	chr11	89197711	89197712	rs11018623	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs11018623-C	NR	3E-23		0.085	[0.032-0.138] unit increase	Affymetrix [8351141] (imputed)	N
1265	chr11	89200872	89200873	rs564699	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	11q14.3	NOX4	rs564699-C	0.21	8E-6	(male)	0.508	[0.29-0.73] unit increase	Illumina [6380737] (imputed)	N
1265	chr11	89201626	89201627	rs957140	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	11q14.3	NOX4	rs957140-A	0.45	2E-8		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
1265	chr11	89205679	89205680	rs111948445	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	11q14.3	NR	rs111948445-?	NR	5E-6		0.2604	[0.15-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
1265	chr11	89208853	89208854	rs10830277	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11q14.3	NOX4	rs10830277-T	NR	5E-6		0.02722	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
1265	chr11	89216424	89216425	rs10830278	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q14.3	NOX4	rs10830278-T	0.759	1E-9		0.259	[0.18-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
1265	chr11	89220221	89220222	rs595518	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.3	PSMAL	rs595518-?	NR	6E-6	(TAG 52:3)	0.23414165	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q14.3		rs2289125-C	NR	1E-11		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q14.3		rs2289125-C	NR	5E-41		0.028	[0.024-0.032] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	11q14.3		rs2289125-C	0.504857	1E-11		0.0234063	[0.017-0.03] unit increase	Illumina [13477769] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q14.3		rs2289125-C	NR	9E-21		0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q14.3		rs2289125-C	0.50478	3E-14		0.0156102	[0.012-0.02] unit increase	Illumina [13479295] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q14.3	NOX4	rs2289125-C	0.79	2E-9		6.04	z-score increase	Affymetrix [4314223] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q14.3	NOX4	rs2289125-?	NR	2E-16		0.023915572	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q14.3		rs2289125-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q14.3		rs2289125-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q14.3	NOX4	rs2289125-A	0.3076	1E-28		0.3421	[0.28-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q14.3	NOX4	rs2289125-A	0.49	4E-6	(Japanese)	0.3788	[0.22-0.54] unit decrease	Illumina [6200000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	11q14.3	NOX4	rs2289125-A	0.4875	2E-11	(East Asian)	0.3053	[0.22-0.39] unit decrease	Illumina [6200000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	11q14.3	NOX4	rs2289125-?	NR	5E-12		0.02881	[0.021-0.037] unit increase	Illumina [6108953] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q14.3	NOX4	rs2289125-C	0.77	9E-16		0.321	[0.24-0.4] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q14.3	NOX4	rs2289125-C	0.77	3E-9	(EA, initial)	0.359	[0.24-0.48] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q14.3	NOX4	rs2289125-A	0.21	9E-22		0.377	[0.3-0.46] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q14.3	NOX4	rs2289125-A		2E-9		0.274	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q14.3	NOX4	rs2289125-A		1E-14		0.324	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q14.3	NOX4	rs2289125-A		1E-10	(EA)	0.311	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1265	chr11	89224452	89224453	rs2289125	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q14.3	NOX4	rs2289125-A		2E-30		0.347	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1265	chr11	89224476	89224477	rs2289124	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q14.3	NOX4	rs2289124-A	0.3822	2E-11		0.2199	[0.16-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1265	chr11	89224717	89224718	rs2289123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	11q14.3		rs2289123-T	0.491798	1E-8		0.0158385	[0.01-0.021] unit increase	Illumina [13479924] (imputed)	N
1265	chr11	89224717	89224718	rs2289123	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11q14.3	NOX4	rs2289123-T	0.31	3E-7	(African American)	0.3	[0.18-0.42] unit increase	Illumina [up to 13042663] (imputed)	N
1265	chr11	89224717	89224718	rs2289123	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11q14.3	NOX4	rs2289123-?	NR	8E-7	(MR-MEGA)			Illumina [3153931] (imputed)	N
1265	chr11	89228424	89228425	rs10765211	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	11q14.3	NR	rs10765211-A	0.3851	9E-7		0.158	mmHg decrease	Illumina [242296]	N
1266	chr11	89260212	89260213	rs146783010	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	11q14.3	NR	rs146783010-G		5E-6		0.6016	[0.34-0.87] SD units increase	NR [10700000] (imputed)	N
1266	chr11	89261774	89261775	rs12276991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs12276991-?	NR	9E-28				NR [~ 8900000] (imputed)	N
1266	chr11	89308437	89308441	rs148215689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q14.3		rs148215689-T	NR	2E-13		0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1266	chr11	89316132	89316133	rs2118022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q14.3		rs2118022-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1266	chr11	89339665	89339666	rs117956829	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q14.3	NOX4, FOLH1B	rs117956829-?		2E-9				NR [6786993] (imputed)	N
1266	chr11	89345024	89345025	rs1488902	20801717	Shatunov A	2010-10-01	Lancet Neurol	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	11q14.3	NR	rs1488902-C	NR	3E-6		1.145	[NR]	Illumina [227475]	N
1266	chr11	89356627	89356628	rs11018670	30178632	Meng W	2018-09-04	Acta Ophthalmol	A genome-wide association study suggests new evidence for an association of the NADPH Oxidase 4 (NOX4) gene with severe diabetic retinopathy in type 2 diabetes.	Severe diabetic retinopathy in type 2 diabetes	560 Scottish ancestry proliferative or severe background retinopathy cases, 4,106 Scottish ancestry mild or no retinopathy controls	NA	11q14.3	NOX4	rs11018670-G	0.427	1E-8		1.55	[1.33-1.80]	Affymetrix, Illumina [6585471] (imputed)	N
1267	chr11	89401698	89401699	rs61905505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs61905505-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1267	chr11	89447374	89447375	rs17221124	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q14.3		rs17221124-?	NR	4E-8		1.0987	[1.07-1.13]	NR [685523]	N
1267	chr11	89447374	89447375	rs17221124	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs17221124-T	NR	2E-29		0.154	[0.064-0.244] unit increase	Affymetrix [8351141] (imputed)	N
1267	chr11	89466731	89466732	rs17221829	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA		LOC100130203	rs17221829-A	0.38	5E-6	(Quantitative)	0.4408	[NR] unit decrease	Illumina [471581]	N
1267	chr11	89486362	89486362	rs202102888	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q14.3	TRIM77, TRIM49	rs202102888-C	0.897442	6E-20	(beta-citrylglutamate)	0.382	[0.3-0.46] unit increase	Illumina [13039987] (imputed)	N
1267	chr11	89502375	89502376	rs2130017	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11q14.3	TRIM49	rs2130017-?	NR	8E-6				Affymetrix, Illumina [~ 1300000]	N
1268	chr11	89548728	89548729	rs4517514	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q14.3	NR	rs4517514-T	0.1359	3E-6	(Trans/trans-18:2, EA)	0.0028	[0.0016-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1268	chr11	89548848	89548849	rs4517515	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q14.3	NR	rs4517515-T	0.1358	3E-6	(Trans/trans-18:2, EA)	0.0028	[0.0016-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1269	chr11	89654535	89654536	rs4753251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	11q14.3		rs4753251-A	0.733599	4E-28		0.0615215	[0.051-0.072] unit decrease	Illumina [13469940] (imputed)	N
1269	chr11	89654535	89654536	rs4753251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11q14.3	TRIM49D1	rs4753251-A	0.730078	2E-10		0.016062586	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr11	89654535	89654536	rs4753251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q14.3	NR	rs4753251-A	0.721742	4E-31				Affymetrix, Illumina [19905671] (imputed)	N
1269	chr11	89654535	89654536	rs4753251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q14.3	NR	rs4753251-A	0.727861	3E-20		0.02157	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1269	chr11	89714676	89714677	rs148598389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	11q14.3	NR	rs148598389-G	0.683518	1E-17		0.058705	[0.045-0.072] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1269	chr11	89749891	89749892	rs139924747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	11q14.3		rs139924747-G	NR	1E-19		0.049	[0.038-0.06] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1270	chr11	89840741	89840742	rs79412137	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q14.3	UBTFL1, NAALAD2	rs79412137-A	0.949126	2E-29	(beta-citrylglutamate)	0.561	[0.46-0.66] unit increase	Illumina [13039987] (imputed)	N
1270	chr11	89841121	89841122	rs7108196	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	11q14.3	NAALAD2	rs7108196-A	0.15	2E-14	(beta-citrylglutamate, saccharopine)	0.009	[0.007-0.011] unit decrease	Illumina [7750367] (imputed)	N
1270	chr11	89841121	89841122	rs7108196	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	11q14.3	NAALAD2	rs7108196-A	0.15	3E-25	(beta-citrylglutamate)	0.272	[0.22-0.32] unit decrease	Illumina [7750367] (imputed)	N
1270	chr11	89866714	89866715	rs1943379	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q14.3	UBTFL1, NAALAD2	rs1943379-G	0.543329	2E-47	(beta-citrylglutamate)	0.329	[0.28-0.37] unit increase	Illumina [13039987] (imputed)	N
1270	chr11	89875436	89875437	rs11018874	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	11q14.3	NAALAD2	rs11018874-?	NR	2E-16		0.05505	[0.042-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1270	chr11	89875436	89875437	rs11018874	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	11q14.3	NAALAD2	rs11018874-G	0.69	2E-9	(basophil count)	0.077	[0.05-0.11] unit increase	Illumina [2178645] (imputed)	N
1271	chr11	89922229	89922230	rs11018904	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	NAALAD2	rs11018904-A	NR	8E-9		0.021720279	[0.014-0.029] unit increase	Affymetrix [NR]	N
1271	chr11	89922416	89922417	rs61903695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q14.3		rs61903695-G	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1271	chr11	89922416	89922417	rs61903695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q14.3		rs61903695-G	NR	3E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1271	chr11	89922416	89922417	rs61903695	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q14.3	NAALAD2	rs61903695-A	0.745081	7E-13		0.0113248	[0.0082-0.0144] unit decrease	Affymetrix [12370749]	N
1271	chr11	89922416	89922417	rs61903695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.3	NR	rs61903695-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1271	chr11	89922416	89922417	rs61903695	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q14.3	NR	rs61903695-G	0.2558	3E-9		0.016831236	[0.011-0.022] unit increase	Affymetrix [10549349] (imputed)	N
1271	chr11	89922416	89922417	rs61903695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q14.3		rs61903695-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1271	chr11	89922416	89922417	rs61903695	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q14.3	NA	rs61903695-A	0.751	5E-11		0.0145	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1271	chr11	89932911	89932913	rs200830364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	11q14.3	CHORDC1	rs200830364-T	0.371	7E-10		0.02312203	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1271	chr11	89935585	89935586	rs1045861	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11q14.3	NA	rs1045861-T	0.7031	3E-9		0.0109	[0.0074-0.0144] unit increase	NR [~ 27400000] (imputed)	N
1271	chr11	89937593	89937593	rs34401930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q14.3	CHORDC1	rs34401930-TA	0.196927	4E-11		0.018429706	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr11	89938605	89938606	rs776972026	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	11q14.3		rs776972026-A	0.01058	3E-6		2.953	[1.876-4.648]	Affymetrix [7975321] (imputed)	N
1271	chr11	89951367	89951368	rs34787918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	11q14.3	CHORDC1	rs34787918-G	0.4473	2E-10		0.0223271	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1271	chr11	89953314	89953315	rs11018921	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q14.3	NAALAD2	rs11018921-?	NR	3E-6	(SM 14:0)	0.19881678	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1271	chr11	89959636	89959637	rs578174	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	11q14.3	NR	rs578174-A	0.898	2E-8		1.049318	[1.03-1.07]	NR [5276842] (imputed)	N
1271	chr11	89959636	89959637	rs578174	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q14.3	NR	rs578174-G	0.1043	3E-7		0.0099	[0.0062-0.0136] unit decrease	NR [7666894] (imputed)	N
1271	chr11	89968245	89968246	rs61903723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.3	Intergenic	rs61903723-T	0.1903	6E-10	(MTAG)	0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr11	89969178	89969179	rs78539082	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs78539082-C	NR	1E-17		0.112	[0.038-0.186] unit increase	Affymetrix [8351141] (imputed)	N
1271	chr11	89997795	89997796	rs10741329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q14.3	NR	rs10741329-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1271	chr11	90008401	90008402	rs78970479	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	11q14.3		rs78970479-?	NR	8E-6				Illumina [7401356] (imputed)	N
1271	chr11	90034659	90034660	rs472190	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.3	NR	rs472190-?	NR	3E-6		4.66	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1272	chr11	90048898	90048899	rs7127419	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		11q14.3	NR	rs7127419-A	NR	3E-6	(conditioned on rs1426654)	0.675051	[0.39-0.96] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1272	chr11	90057948	90057949	rs543714	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.3	Intergenic	rs543714-T	0.2994	3E-10	(MTAG)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1272	chr11	90076343	90076344	rs10830481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.3	NR	rs10830481-C	0.14	3E-8		0.00860791	[0.0055-0.0117] unit decrease	NR [9732723] (imputed)	N
1272	chr11	90167431	90167432	rs497669	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.3	NR	rs497669-?	NR	6E-6		4.532	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1273	chr11	90181342	90181343	rs10741336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs10741336-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1273	chr11	90188846	90188847	rs534128177	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	11q14.3		rs534128177-T	0.0168	7E-6		2.446	[1.65699999999999-3.612]	Affymetrix [7975321] (imputed)	N
1273	chr11	90194708	90194709	rs145146260	31120506	Grassmann F	2019-05-23	JAMA Ophthalmol	Assessment of Novel Genome-Wide Significant Gene Loci and Lesion Growth in Geographic Atrophy Secondary to Age-Related Macular Degeneration.	Geographic atrophy lesion growth rate in age-related macular degeneration	935 European ancestry individuals	NA	11q14.3	NR	rs145146260-C	0.07	4E-7		0.105	[0.068-0.143] unit increase	Affymetrix [7596219] (imputed)	N
1273	chr11	90208882	90208883	rs1944068	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	11q14.3	NR	rs1944068-A	NR	1E-8		0.052	[0.0089-0.0951] unit decrease	Affymetrix [8351141] (imputed)	N
1274	chr11	90315565	90315566	rs11019106	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q14.3		rs11019106-G	0.872	6E-9		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1274	chr11	90386390	90386391	rs7937910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q14.3	Intergenic	rs7937910-T	0.7451	2E-14	(MTAG)	0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1274	chr11	90389864	90389865	rs2155076	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.3	NR	rs2155076-?	NR	1E-7		5.298	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1274	chr11	90389864	90389865	rs2155076	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	DISC1FP1	rs2155076-T	NR	4E-10		0.020716691	[0.014-0.027] unit decrease	Affymetrix [NR]	N
1274	chr11	90393586	90393587	rs11019128	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.3	Intergenic	rs11019128-T	0.3784	3E-16	(MTAG)	0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1274	chr11	90394539	90394540	rs7127743	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q14.3	Intergenic	rs7127743-T	0.5809	2E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1274	chr11	90394539	90394540	rs7127743	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q14.3	Intergenic	rs7127743-T	0.581	2E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1274	chr11	90406023	90406024	rs4491180	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.3	Intergenic	rs4491180-A	0.3839	2E-15	(MTAG)	0.0107	[0.0082-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1274	chr11	90409354	90409355	rs34226552	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q14.3	Intergenic	rs34226552-A	0.3846	3E-12	(MTAG)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1274	chr11	90410141	90410142	rs34735495	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	11q14.3	DISC1FP1	rs34735495-G	0.034076152	4E-6		1.4680247	[1.246296636-1.729200387]	Illumina [10439017] (imputed)	N
1274	chr11	90424637	90424638	rs7948975	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q14.3		rs7948975-T	0.6586	5E-8		39.89753	z score increase	NR [6814003]	N
1274	chr11	90424637	90424638	rs7948975	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	11q14.3	NR	rs7948975-T	0.638	1E-9		0.014110048	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1274	chr11	90430821	90430822	rs1632631	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	DISC1FP1	rs1632631-A	NR	3E-9		0.017782195	[0.012-0.024] unit increase	Affymetrix [NR]	N
1274	chr11	90439632	90439633	rs1792602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.3		rs1792602-A	0.3824	2E-11		0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1275	chr11	90452369	90452370	rs1783803	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	11q14.3	DISC1FP1	rs1783803-?	NR	1E-9		6.071	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1275	chr11	90471233	90471234	rs4589258	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	DISC1FP1	rs4589258-A	NR	2E-8		0.016973	[0.011-0.023] unit increase	Affymetrix [NR]	N
1275	chr11	90472974	90472975	rs10734135	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	DISC1FP1	rs10734135-A	NR	4E-8		0.016051343	[0.01-0.022] unit increase	Affymetrix [NR]	N
1275	chr11	90485296	90485297	rs10830568	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q14.3	DISC1FP1	rs10830568-A	0.4928	2E-9		0.012134515	[0.0082-0.0161] unit increase	Affymetrix [up to 18485882] (imputed)	N
1275	chr11	90494774	90494775	rs4400760	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.3	NR	rs4400760-?	NR	4E-6		4.625	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1275	chr11	90513271	90513272	rs35293660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11q14.3	Intergenic	rs35293660-C	0.1059	3E-11		0.031	[0.022-0.04] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1275	chr11	90521748	90521749	rs10741374	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q14.3	DISC1FP1	rs10741374-T	0.4989	4E-8		0.011083736	[0.0071-0.015] unit increase	Affymetrix [up to 18485882] (imputed)	N
1275	chr11	90524289	90524290	rs7926906	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q14.3	DISC1FP1	rs7926906-A	NR	3E-8		0.024594253	[0.016-0.033] unit increase	Affymetrix [NR]	N
1275	chr11	90566512	90566513	rs2852931	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11q14.3	NR	rs2852931-G	0.136183	1E-10		0.05872671	[0.041-0.077] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1276	chr11	90576100	90576101	rs13377206	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	11q14.3	MIR4490	rs13377206-A	0.83	3E-6	(Left HG thickness)	0.0437	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1276	chr11	90586084	90586085	rs149504921	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q14.3	HP11113	rs149504921-C	0.992	5E-6	(AA)	0.097	unit increase	Illumina [NR] (imputed)	N
1276	chr11	90586899	90586900	rs12274302	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	11q14.3	intergenic	rs12274302-?	NR	4E-7	(progression)			Illumina [NR]	N
1276	chr11	90675659	90675660	rs10765404	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.3	NR	rs10765404-?	NR	1E-12				Affymetrix [NR]	N
1277	chr11	90731252	90731253	rs1528749	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q14.3	NR	rs1528749-?	NR	4E-6		4.6	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1277	chr11	90810481	90810482	rs74909557	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q14.3		rs74909557-?	NR	6E-6		1.1570607	[1.08634278133024-1.23238213983051]	Illumina [up to 7827597] (imputed)	N
1278	chr11	90849160	90849161	rs11019290	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.3	NR	rs11019290-?	NR	4E-10				Affymetrix [NR]	N
1278	chr11	90884338	90884339	rs1528753	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	11q14.3	intergenic	rs1528753-?	NR	8E-8	(age at death)			Affymetrix [70897]	N
1278	chr11	90913728	90913729	rs34850791	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q14.3	RP11-739P6.1	rs34850791-A	0.8682	4E-6		0.0443	[0.025-0.063] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1278	chr11	90954608	90954609	rs2514923	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11q14.3	intergenic	rs2514923-C	0.602	6E-16		0.19	[0.15-0.24] unit increase	Affymetrix [339439]	N
1278	chr11	90956213	90956214	rs4491175	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	11q14.3	MIR1261	rs4491175-T	NR	8E-6	(AA)	1.1	[0.59-1.61] unit increase	Affymetrix [~ 2300000] (imputed)	N
1279	chr11	91025655	91025656	rs12362231	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	11q14.3		rs12362231-?	NR	5E-6		0.17	[0.097-0.243] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1279	chr11	91066978	91066979	rs11019401	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.3	NR	rs11019401-?	NR	2E-9				Affymetrix [NR]	N
1280	chr11	91113839	91113840	rs376479926	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	11q14.3	NR	rs376479926-C	NR	7E-6		1.4867	[1.31-1.66]	Illumina [11600722] (imputed)	N
1280	chr11	91171294	91171295	rs7951474	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	11q14.3		rs7951474-G	0.689138	1E-5		0.0133507	[0.0076-0.0191] unit decrease	Illumina [13900000] (imputed)	N
1281	chr11	91260528	91260529	rs72963340	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q14.3	NR	rs72963340-?		3E-6				Illumina [4322238] (imputed)	N
1282	chr11	91368158	91368159	rs72965470	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11q14.3	NR	rs72965470-A	0.9779	3E-7		0.1841	[0.11-0.25] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1282	chr11	91454033	91454034	rs3847511	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	11q14.3	NR	rs3847511-T	0.08	8E-6		1.36	1.19-1.55	NR [8807005] (imputed)	N
1283	chr11	91499272	91499273	rs10830769	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q14.3		rs10830769-A	0.38	2E-12		7.04	z score increase	Affymetrix [9061022] (imputed)	N
1283	chr11	91499272	91499273	rs10830769	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q14.3		rs10830769-A	0.38	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
1283	chr11	91499272	91499273	rs10830769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q14.3	Intergenic	rs10830769-G	0.6224	8E-12		0.0137	[0.0098-0.0176] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1283	chr11	91509922	91509923	rs7934386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q14.3	Intergenic	rs7934386-T	0.3669	8E-12	(MTAG)	0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr11	91509922	91509923	rs7934386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.3	Intergenic	rs7934386-T	0.3667	2E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr11	91514080	91514081	rs10734153	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.3	NR	rs10734153-T	0.3496	2E-8				NR [9056863] (imputed)	N
1283	chr11	91514080	91514081	rs10734153	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.3	NR	rs10734153-T	0.359	2E-8		0.00627954	[0.0041-0.0085] unit increase	NR [9732723] (imputed)	N
1283	chr11	91524542	91524543	rs4589253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.3	FAT3	rs4589253-T	0.604756	8E-11		0.0122569	[0.0086-0.016] unit increase	NR [13737936] (imputed)	N
1283	chr11	91584386	91584387	rs11019658	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.3		rs11019658-?	NR	3E-10		0.0182513	[0.012-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1283	chr11	91585735	91585736	rs4753347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q14.3		rs4753347-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1283	chr11	91603694	91603695	rs10765496	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	RNF175, SFRP2	rs10765496-?		3E-8				NR [7428630] (imputed)	N
1283	chr11	91616690	91616691	rs12225068	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11q14.3	TUBB4BP4	rs12225068-A	0.917154	6E-10				Affymetrix, Illumina [NR] (imputed)	N
1283	chr11	91616690	91616691	rs12225068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q14.3		rs12225068-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1284	chr11	91637158	91637159	rs17571502	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration	2,704 ever-smoker individuals, 1,728 never-smoker individuals	NA	11q14.3	LOC105369428	rs17571502-C	0.3548	8E-6		0.08258	[NR] unit increase	Illumina [658884]	N
1284	chr11	91657275	91657276	rs10501765	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	11q14.3	FAT3	rs10501765-?		8E-6				Illumina [859311]	N
1284	chr11	91673520	91673521	rs149020156	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	11q14.3	intergenic	rs149020156-?	NR	6E-7		7.41	[3.38-16.25]	Illumina [9380034] (imputed)	N
1284	chr11	91685202	91685203	rs113034494	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11q14.3	NR	rs113034494-?	NR	3E-6		0.0882	[0.052-0.125] unit increase	Illumina [~ 7800000] (imputed)	N
1285	chr11	91783749	91783750	rs11019759	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q14.3	NR	rs11019759-?	NR	4E-32				Affymetrix [NR]	N
1286	chr11	91882052	91882053	rs1496707	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	11q14.3	NR	rs1496707-G	NR	2E-6				Affymetrix [at least 811691] (imputed)	N
1286	chr11	91896637	91896638	rs10830858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q14.3		rs10830858-T	0.5104	5E-11		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1286	chr11	91896637	91896638	rs10830858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q14.3	Intergenic	rs10830858-T	0.5104	3E-13	(MTAG)	0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr11	91903708	91903709	rs4508164	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q14.3	Intergenic	rs4508164-T	0.4865	7E-12	(MTAG)	0.0113	[0.0082-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr11	91929453	91929454	rs1125472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q14.3	Intergenic	rs1125472-T	0.4144	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1286	chr11	91952153	91952154	rs1350445	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	11q14.3	intergenic	rs1350445-?	NR	9E-6	(ABI)			Affymetrix [70897]	N
1286	chr11	91970184	91970184	rs139074105	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	11q14.3		rs139074105-?	NR	5E-10				NR [9705931] (imputed)	N
1286	chr11	91979017	91979018	rs12786200	25710658	Diouf B	2015-02-24	JAMA	Association of an inherited genetic variant with vincristine-related peripheral neuropathy in children with acute lymphoblastic leukemia.	Vincristine-induced peripheral neuropathy in acute lymphoblastic leukemia	53 European ancestry cases with peripheral neuropathy, 156 cases without peripheral neuropathy, 10 African ancestry cases with peripheral neuropathy, 33 African ancestry cases without peripheral neuropathy, 1 Asian ancestry case with peripheral neuropathy, 1 Asian ancestry case without peripheral neuropathy, 14 Hispanic cases with peripheral neuropathy, 30 Hispanic cases without peripheral neuropathy, 8 cases with peripheral neuropathy, 15 cases without peripheral neuropathy	NA	11q14.3	MTNR1B	rs12786200-?	NR	3E-8		4.35	[2.50-7.69]	Affymetrix [1576016] (imputed)	N
1286	chr11	91996430	91996431	rs7944251	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	11q14.3	FAT3	rs7944251-?		2E-6		1.5547264	[NR]	Affymetrix [492217] (imputed)	N
1286	chr11	91996430	91996431	rs7944251	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	11q14.3	FAT3	rs7944251-?		4E-7		1.525553	[NR]	Affymetrix [492217] (imputed)	N
1286	chr11	92007100	92007101	rs1318862	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	11q14.3	FAT3	rs1318862-T	0.58	6E-9	(Caudate, EA)	26.86	[17.80-35.92] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1286	chr11	92011125	92011126	rs1187162	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs1187162-?	NR	6E-11	(left caudate)			NR [9227495] (imputed)	N
1286	chr11	92011125	92011126	rs1187162	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs1187162-?	NR	4E-10	(right caudate)			NR [9227495] (imputed)	N
1286	chr11	92011125	92011126	rs1187162	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q14.3	NR	rs1187162-T	0.4148	2E-8		5.633	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1286	chr11	92011125	92011126	rs1187162	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q14.3	NR	rs1187162-T	0.4148	3E-12		6.976	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1287	chr11	92016604	92016605	rs10830893	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs10830893-?	NR	1E-9	(left caudate)			NR [9227495] (imputed)	N
1287	chr11	92018777	92018778	rs10830894	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs10830894-?	NR	3E-8	(right caudate)			NR [9227495] (imputed)	N
1287	chr11	92024283	92024284	rs10765544	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	11q14.3	NR	rs10765544-?		1E-16				NR [7428630] (imputed)	N
1287	chr11	92024283	92024284	rs10765544	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	11q14.3	TNS1	rs10765544-?		3E-16				NR [7428630] (imputed)	N
1287	chr11	92024283	92024284	rs10765544	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs10765544-?	NR	4E-10	(left caudate)			NR [9227495] (imputed)	N
1287	chr11	92026445	92026446	rs3133370	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q14.3	NR	rs3133370-T	0.6642	3E-7		5.112	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1287	chr11	92026445	92026446	rs3133370	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q14.3	NR	rs3133370-T	0.6642	1E-13		7.446	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1287	chr11	92032929	92032930	rs2845871	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	PDGFC	rs2845871-?		2E-34				NR [7428630] (imputed)	N
1287	chr11	92033161	92033162	rs947934	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	NR	rs947934-?		3E-21				NR [7428630] (imputed)	N
1287	chr11	92058949	92058950	rs138662357	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	11q14.3	NDUFB11P1, FAT3, PGAM1P9	rs138662357-C	0.0555	3E-7		0.074	NR unit increase	NR [NR] (imputed)	N
1287	chr11	92100355	92100356	rs7129229	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	11q14.3	LOC401705, LOC100130038, LOC390239, FAT3	rs7129229-T	0.151	1E-6	(n-6 PUFA)			Affymetrix [590000]	N
1287	chr11	92131009	92131010	rs143754716	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Docosahexaenoic acid (22:6) meal response (OrNLSr)	4,292 individuals	NA	11q14.3		rs143754716-G	0.019663831	7E-9		0.536648	[0.36-0.72] unit increase	Illumina [7701709] (imputed)	N
1288	chr11	92155217	92155218	rs147582129	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q14.3	FAT3	rs147582129-T	0.016	9E-6	(liability model)	0.28	[0.16-0.4] unit increase	NR [19725427] (imputed)	N
1288	chr11	92196918	92196919	rs760310323	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q14.3	FAT3	rs760310323-A	0.9982	6E-6		0.4724	[0.27-0.68] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1288	chr11	92236686	92236687	rs61901554	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs61901554-?	NR	2E-8	(right caudate)			NR [9227495] (imputed)	N
1288	chr11	92242050	92242051	rs79939455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q14.3	NR	rs79939455-G	0.01045	8E-36	(NME8)	0.1445	NR unit increase	Illumina [1671387] (imputed)	N
1289	chr11	92278785	92278786	rs616596	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q14.3	NR	rs616596-?	NR	5E-9	(right caudate)			NR [9227495] (imputed)	N
1289	chr11	92289733	92289734	rs586699	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q14.3	NR	rs586699-A	0.543	7E-9		0.014803281	[0.0098-0.0198] unit decrease	NR [~ 10000000] (imputed)	N
1289	chr11	92317857	92317858	rs1622987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q14.3		rs1622987-A	NR	5E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1289	chr11	92317857	92317858	rs1622987	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	11q14.3		rs1622987-?	NR	2E-13				NR [9705931] (imputed)	N
1289	chr11	92319653	92319654	rs1792354	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q14.3	NR	rs1792354-T	0.6622	2E-8	(Parahippocampal)	2.5927296	[1.69-3.5] unit decrease	Affymetrix, Illumina [NR]	N
1289	chr11	92321475	92321476	rs556587	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q14.3	FAT3	rs556587-?	NR	2E-8		0.016310493	[0.011-0.022] unit decrease	NR [7306098]	N
1289	chr11	92348701	92348702	rs61901866	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q14.3	NR	rs61901866-T	0.1549	7E-14	(Pars Orbitalis)	4.1242123	[3.04-5.2] unit increase	Affymetrix, Illumina [NR]	N
1289	chr11	92400580	92400581	rs1792358	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11q14.3	NA	rs1792358-T		4E-13		0.0140644	[0.01-0.018] unit increase	Illumina [13288253] (imputed)	N
1290	chr11	92407573	92407574	rs535888	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q14.3	FAT3	rs535888-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1290	chr11	92451566	92451567	rs1791559	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	11q14.3		rs1791559-A	0.34	5E-6				NR [13131314] (imputed)	N
1290	chr11	92451566	92451567	rs1791559	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q14.3		rs1791559-A	0.34	1E-56		15.87	z score increase	Affymetrix [9061022] (imputed)	N
1290	chr11	92451566	92451567	rs1791559	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q14.3		rs1791559-A	0.34	2E-35		12.44	z score increase	Affymetrix [9061022] (imputed)	N
1290	chr11	92452664	92452665	rs5006910	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q14.3		rs5006910-C	0.34	6E-27		10.74	z score increase	Affymetrix [9061022] (imputed)	N
1290	chr11	92452664	92452665	rs5006910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q14.3	NR	rs5006910-C	0.3275	1E-17				NR [9056863] (imputed)	N
1290	chr11	92452664	92452665	rs5006910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q14.3	NR	rs5006910-C	0.3275	1E-17				NR [9056863] (imputed)	N
1290	chr11	92466094	92466095	rs2254992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q14.3		rs2254992-T	NR	3E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1290	chr11	92471623	92471624	rs2852401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q14.3		rs2852401-T	NR	1E-8		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1290	chr11	92510896	92510897	rs3847528	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	ZIC4, ZIC1	rs3847528-?		7E-11				NR [7428630] (imputed)	N
1290	chr11	92510896	92510897	rs3847528	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	FAT3	rs3847528-?		3E-15				NR [7428630] (imputed)	N
1290	chr11	92525614	92525615	rs10830947	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q14.3	NR	rs10830947-A	0.343	3E-11		0.00757976	[0.0053-0.0098] unit increase	NR [9732723] (imputed)	N
1291	chr11	92551381	92551382	rs142416231	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	11q14.3	FAT3	rs142416231-T	7.0E-4	4E-28		14.2272	[11.69-16.76] mmHg increase	Affymetrix [NR] (imputed)	N
1291	chr11	92568907	92568908	rs12789841	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			FAT3	rs12789841-G	0.3874	6E-9		0.048974	[0.032-0.065] unit increase	Affymetrix [8165723] (imputed)	N
1291	chr11	92580804	92580805	rs76811883	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q14.3	FAT3	rs76811883-A	0.0345756939194245	1E-6	(G_Acidaminococcus_RNT)	0.688638	[0.41-0.97] unit increase	Illumina [7711310] (imputed)	N
1291	chr11	92587446	92587447	rs7940228	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q14.3	RP11-215A19.2	rs7940228-?		1E-9				NR [7428630] (imputed)	N
1291	chr11	92601908	92601909	rs10765567	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	6,141 European ancestry cases, 59,475 European ancestry controls	9,171 European ancestry cases, 406,168 European ancestry controls	11q14.3	FAT3	rs10765567-A	0.63	2E-17		1.1441647	[1.11-1.18]	Affymetrix, Illumina [7581674] (imputed)	N
1291	chr11	92601908	92601909	rs10765567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q14.3		rs10765567-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1291	chr11	92601908	92601909	rs10765567	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q14.3		rs10765567-?	NR	4E-24		0.0205853	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1291	chr11	92607865	92607866	rs10765568	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Retinal detachment	4,257 European ancestry cases, 39,181 European ancestry controls	NA	11q14.3	FAT3	rs10765568-T	0.37	1E-15		0.2	[0.16-0.24] unit decrease	NR [NR]	N
1291	chr11	92607865	92607866	rs10765568	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q14.3	FAT3	rs10765568-C	0.627235	2E-19		0.0172034	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
1291	chr11	92612281	92612282	rs35709256	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	11q14.3	FAT3	rs35709256-A	0.07	9E-7		2.07	[1.55-2.77]	Affymetrix [645639] (imputed)	N
1291	chr11	92623492	92623493	rs7101609	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	11q14.3	FAT3	rs7101609-G	0.354	2E-8		0.013	[0.0091-0.0169] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1291	chr11	92623607	92623608	rs7118363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinal detachment	6,591 European ancestry cases, 470,440 European ancestry controls, 1,389 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11q14.3		rs7118363-G	NR	7E-23		0.1693	[0.14-0.2] unit decrease	Affymetrix, Illumina [25843609] (imputed)	N
1291	chr11	92623607	92623608	rs7118363	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment with retinal break	1,380 British ancestry cases, 360,233 British ancestry controls	NA	11q14.3	FAT3	rs7118363-A	0.607812	6E-6		1.1932346	[1.10707499-1.28609971]	Affymetrix, Illumina [7701827] (imputed)	N
1291	chr11	92623607	92623608	rs7118363	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	11q14.3	FAT3	rs7118363-A	0.608	1E-16		1.2172749	1.1630564-1.27402081	Affymetrix, Illumina [7701827] (imputed)	N
1291	chr11	92623607	92623608	rs7118363	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment	2,893 British ancestry cases, 360,233 British ancestry controls	NA	11q14.3	FAT3	rs7118363-A	0.607927	5E-8		1.1572812	[1.0988769-1.2187895]	Affymetrix, Illumina [7701827] (imputed)	N
1291	chr11	92651001	92651002	rs7950811	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	11q14.3	intergenic	rs7950811-A	0.071	1E-8		0.16	[NR] unit increase	Illumina [948658]	N
1291	chr11	92651001	92651002	rs7950811	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	11q14.3	intergenic	rs7950811-A	0.071	9E-7		1.65	[1.35-2.00]	Illumina [948658]	N
1291	chr11	92667046	92667047	rs12222793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q14.3	NR	rs12222793-G	NR	3E-21		0.0231	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1291	chr11	92667657	92667658	rs4543939	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	11q14.3	NR	rs4543939-A	0.43	4E-6		2.43	[2.06-2.8]	NR [up to 6398204] (imputed)	N
1292	chr11	92668825	92668826	rs3847554	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs3847554-?	NR	2E-10		0.0620278	[0.043-0.081] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92668825	92668826	rs3847554	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	11q14.3	MTNR1B	rs3847554-?	NR	2E-11		0.059	[0.041-0.077] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
1292	chr11	92669907	92669908	rs6483205	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	11q14.3	FAT3, MTNR1B	rs6483205-?		1E-6		7.844	[5.11-10.58] unit decrease	Illumina [~ 4900000] (imputed)	N
1292	chr11	92671743	92671744	rs7113297	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		11q14.3	MTNR1B	rs7113297-T	NR	4E-7		1.1118219		Affymetrix, Illumina [1918233] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q14.3	NR	rs1387153-T	NR	6E-86		0.0524	[0.047-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	11q14.3	NR	rs1387153-?	NR	7E-6		0.06878428	[0.039-0.099] unit increase	Illumina [22871999] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs1387153-?	NR	3E-16		0.08131414	[0.062-0.101] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	LOC100128354	rs1387153-C	NR	8E-9	(BP-GLUC)	0.19	[0.13-0.25] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	LOC100128354	rs1387153-C	NR	2E-9	(HDLC-GLUC)	0.21	[0.15-0.27] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	11q14.3	MTNR1B	rs1387153-T	0.28	4E-11		0.03	[0.02-0.04] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	11q14.3	MTNR1B	rs1387153-T		8E-15		1.09	[1.06-1.11]	Affymetrix, Illumina [2426886] (imputed)	N
1292	chr11	92673827	92673828	rs1387153	19060909	Bouatia-Naji N	2008-12-07	Nat Genet	A variant near MTNR1B is associated with increased fasting plasma glucose levels and type 2 diabetes risk.	Fasting plasma glucose	2,151 European ancestry individuals	16,094 European ancestry individuals	11q14.3	MTNR1B	rs1387153-T	0.29	2E-36		0.07	[0.05-0.08] mmol/l increase	Illumina [308846]	N
1292	chr11	92681012	92681013	rs10830956	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q14.3	NR	rs10830956-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1292	chr11	92681012	92681013	rs10830956	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q14.3	LOC100128354	rs10830956-C	NR	5E-11	(TG-GLUC)	0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92682603	92682604	rs11020114	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	11q14.3	MTNR1B	rs11020114-?	NR	1E-32				NR [3144808] (imputed)	N
1292	chr11	92685115	92685116	rs10830959	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Glucose meal response (LMM)	11,410 individuals	NA	11q14.3		rs10830959-A	0.267851	4E-8		0.144295	[0.1-0.19] unit decrease	Illumina [7568622] (imputed)	N
1292	chr11	92685115	92685116	rs10830959	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q14.3	MTNR1B	rs10830959-A	0.6985	1E-8		0.1188	[0.078-0.16] mmHg decrease	Affymetrix [NR] (imputed)	N
1292	chr11	92689277	92689278	rs11020123	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	11q14.3	FAT3, MTNR1B	rs11020123-?		4E-6		2.269	[0.33-4.21] unit decrease	Illumina [~ 4900000] (imputed)	N
1292	chr11	92690031	92690032	rs7936247	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs7936247-?	NR	5E-12		0.06570122	[0.047-0.084] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92690031	92690032	rs7936247	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	11q14.3	MTNR1B	rs7936247-T	0.361	3E-16	(1HPG)	0.222	[NR] unit increase	Illumina [up to 945994] (imputed)	N
1292	chr11	92690031	92690032	rs7936247	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	11q14.3	MTNR1B	rs7936247-T	0.361	2E-12	(FPG)	0.0029	[NR] unit increase	Illumina [up to 945994] (imputed)	N
1292	chr11	92691531	92691532	rs2166706	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs2166706-?	NR	1E-9		0.05662004	[0.038-0.075] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92691531	92691532	rs2166706	19651812	Chambers JC	2009-08-03	Diabetes	Common genetic variation near melatonin receptor MTNR1B contributes to raised plasma glucose and increased risk of type 2 diabetes among Indian Asians and European Caucasians.	Fasting plasma glucose	698 Asian Indian ancestry cases, 6,776 Asian Indian ancestry controls	4,462 European ancestry controls	11q14.3	MTNR1B	rs2166706-G	0.46	2E-9		0.07	(0.04-0.09) mmol/L increase	Illumina [up to 544390]	N
1292	chr11	92695708	92695708	rs144683127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q14.3		rs144683127-TTGAGAAATCTCTATACTATTTTCCATAGTGACTG	NR	5E-17		0.0753	[0.058-0.093] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1292	chr11	92697980	92697981	rs10466351	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	11q14.3	MTNR1B	rs10466351-T	0.4382	1E-10		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1292	chr11	92697980	92697981	rs10466351	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	11q14.3	MTNR1B	rs10466351-T	0.38	3E-13	(Glucose)	0.07	[0.05-0.09] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1292	chr11	92698426	92698427	rs10830962	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs10830962-?	NR	4E-14		0.0719788	[0.053-0.091] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92698426	92698427	rs10830962	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	11q14.3	MTNR1B	rs10830962-C		5E-13	(FPG)	0.041	[0.029-0.053] mmol-1 increase	Affymetrix [357789]	N
1292	chr11	92698426	92698427	rs10830962	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	11q14.3	MTNR1B	rs10830962-C		3E-12	(1-hPG)	0.191	[0.14-0.24] mmol-1 increase	Affymetrix [357789]	N
1292	chr11	92698426	92698427	rs10830962	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	11q14.3	MTNR1B	rs10830962-G	0.40	5E-16	(GLU)	0.12	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
1292	chr11	92698426	92698427	rs10830962	22233651	Kwak SH	2012-01-10	Diabetes	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	11q14.3	MTNR1B	rs10830962-G	0.430	2E-13		1.454	[1.315-1.608]	Affymetrix [2188613] (imputed)	N
1292	chr11	92698426	92698427	rs10830962	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q14.3	MTNR1B	rs10830962-C	0.45	1E-16	(FPG)	0.0445	[0.034-0.055] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1292	chr11	92701595	92701596	rs4753426	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	11q14.3	MTNR1B	rs4753426-G	0.4706	2E-6		0.055935	NR unit decrease	Illumina [560351]	N
1292	chr11	92701595	92701596	rs4753426	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	11q14.3	MTNR1B	rs4753426-G	0.4706	4E-7		0.0721806	NR unit decrease	Illumina [560351]	N
1292	chr11	92708709	92708710	rs10830963	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	11q14.3		rs10830963-C	0.23229999999999995	1E-73		0.144	[0.13-0.16] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	11q14.3		rs10830963-C	0.27680000000000005	2E-42		0.1563	[0.13-0.18] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	16,018 Hispanic or Latin American individuals	NA	11q14.3		rs10830963-C	0.2096	1E-16		0.1065	[0.081-0.132] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	12,195 African American or Afro-Caribbean individuals	NA	11q14.3		rs10830963-C	0.0796	2E-14		0.199	[0.15-0.25] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Glucose meal response (OrNLSr)	4,292 individuals	NA	11q14.3		rs10830963-G	0.259063683	2E-19		0.227764	[0.18-0.28] unit decrease	Illumina [7701709] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glucose	4,734 individuals	NA	11q14.3		rs10830963-G	0.258178511	2E-15		0.193084	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q14.3		rs10830963-G	NR	1E-127		0.0528	[0.048-0.057] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.7214	2E-36		0.0197	[0.017-0.023] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.5993	2E-14		0.0871	[0.063-0.111] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.5838	4E-20		0.0409	[0.032-0.049] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.7148	1E-321		0.0772	[0.073-0.081] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.7959	2E-21		0.0611	[0.049-0.074] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.9193	4E-16		0.1069	[0.081-0.132] unit decrease	Affymetrix, Illumina [27843817] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	11q14.3	MTNR1B	rs10830963-G	0.44	7E-26		0.105	[0.085-0.125] unit increase	Affymetrix [774398] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	11q14.3	MTNR1B	rs10830963-C	0.696535	1E-98		0.074236	[0.067-0.081] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	11q14.3	MTNR1B	rs10830963-C	0.696535	4E-100		0.078396	[0.071-0.086] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-C	0.696535	1E-211		0.076802	[0.072-0.082] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q14.3		rs10830963-C	0.7225	5E-13		0.12098465	[0.087-0.155] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q14.3	NR	rs10830963-G	0.2781	5E-68		0.0885	[0.079-0.098] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q14.3	NR	rs10830963-G	0.3057	1E-66		0.0731	[0.065-0.081] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	11q14.3	MTNR1B	rs10830963-G	0.421	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	High fasting blood glucose	7,423 Korean ancestry cases and controls	NA	11q14.3	MTNR1B	rs10830963-G	0.409	8E-14		1.329	[1.233-1.432]	Affymetrix [at least 584061] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q14.3	MTNR1B	rs10830963-?	NR	9E-15	(Glc)	0.07418704	NR unit increase	Illumina [609262]	N
1292	chr11	92708709	92708710	rs10830963	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q14.3	MTNR1B	rs10830963-?	NR	1E-10	(Glc)	0.080324486	NR unit increase	Illumina [609262]	N
1292	chr11	92708709	92708710	rs10830963	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	11q14.3	NR	rs10830963-?	NR	9E-32		0.13381	[0.11-0.16] unit increase	Illumina [29713514] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11q14.3	MTNR1B	rs10830963-G	0.27876599999999996	9E-39		0.044519	[0.038-0.051] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q14.3	MTNR1B	rs10830963-G	0.277226	3E-11		0.019111	[0.013-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-?	NR	6E-74				NR [NR]	N
1292	chr11	92708709	92708710	rs10830963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	11q14.3		rs10830963-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q14.3	MTNR1B	rs10830963-G	0.2765	5E-43		1.1	[1.09-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q14.3	MTNR1B	rs10830963-C	0.7214	6E-13		0.1411	[0.1-0.18] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11q14.3	MTNR1B	rs10830963-G	0.275768063801753	6E-30		0.0909	[0.075-0.107] unit increase	NR [5035015] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Fasting blood glucose	7,647 European ancestry individuals, 2,104 Black individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.28	3E-7	(EA)	1.577	[0.97-2.18] unit increase	Affymetrix [NR] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	29743933	Wu B	2018-03-18	Comput Math Methods Med	Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.	Glycemic traits (multi-trait analysis)	5,947 European ancestry individuals	NA	11q14.3	NR	rs10830963-?	NR	6E-26				NR [~ 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-?	NR	1E-8		0.03899	[0.026-0.052] unit increase novel	Illumina [6108953] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	29309628	Beaumont RN	2018-01-03	Hum Mol Genet	Genome-wide association study of offspring birth weight in 86 577 women identifies five novel loci and highlights maternal genetic effects that are independent of fetal genetics.	Offspring birth weight	68,258 European ancestry women	18,319 European ancestry women	11q14.3	MTNR1B	rs10830963-G	0.29	1E-19		0.052	[0.040-0.064] z-score increase	Affymetrix, Illumina, Perlegen [up to 8741107] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.2938	2E-23		0.0196	[0.016-0.024] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.4542	7E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11q14.3	MTNR1B	rs10830963-G	0.2883	4E-18		0.075	[0.057-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	11q14.3	MTNR1B	rs10830963-G	0.2883	3E-16	(EA)	0.094	[0.071-0.117] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	11q14.3	MTNR1B	rs10830963-G		1E-24		0.235	[0.19-0.28] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Insulin secretion rate	527 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-G		9E-8		0.232	[0.15-0.32] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Insulin disposition index	2,345 Hispanic individuals, 2,042 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	11q14.3	MTNR1B	rs10830963-G	NR	3E-17		0.195	[0.15-0.24] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	11q14.3	MTNR1B	rs10830963-G		4E-21		0.218	[0.17-0.26] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls		11q14.3	MTNR1B	rs10830963-G	0.2	2E-7		1.28	[1.17-1.41]	Illumina [NR] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	11q14.3	MTNR1B	rs10830963-G	0.27	1E-7		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.240006758042847	5E-89		0.07237465	[0.065-0.079] unit increase	Illumina [197481]	N
1292	chr11	92708709	92708710	rs10830963	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.0720163097610618	1E-6	(AA)	0.08397075	[0.05-0.118] unit increase	Illumina [197481]	N
1292	chr11	92708709	92708710	rs10830963	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q14.3	MTNR1B	rs10830963-?		1E-11	(DI)	3.4	[2.4-4.4] unit decrease	Illumina [693128]	N
1292	chr11	92708709	92708710	rs10830963	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q14.3	FAT3, MTNR1B	rs10830963-?		5E-12	(AIRg)	2.76	[1.88-3.64] unit decrease	Illumina [693128]	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels adjusted for BMI	up to 4,409 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	18,535 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	3E-14		0.12	[0.089-0.151] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin levels	up to 4,483 European individuals, up to 441 Old Order Amish (founder/genetic isolate) individuals	20,792 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	2E-7		0.085	[0.054-0.116] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin disposition index	up to 4,746 European individuals, up to 412 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	1E-31		0.19	[0.16-0.22] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Incremental insulin	up to 4,447 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,706 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	3E-8		0.089	[0.058-0.12] unit decrease	NR [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	4E-30		0.19	[0.16-0.22] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	11q14.3	MTNR1B	rs10830963-G	0.69	7E-28		0.17	[0.14-0.2] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	11q14.3	MTNR1B	rs10830963-G	0.27	2E-7		1.11	[1.06-1.16]	Affymetrix, Illumina [2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q14.3	MTNR1B, LOC642791	rs10830963-G	0.205	4E-8	(GLU )	0.05	[NR] mg/dL increase	Illumina [899892]	N
1292	chr11	92708709	92708710	rs10830963	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11q14.3	MTNR1B	rs10830963-G	NR	3E-10	(men)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	11q14.3	MTNR1B	rs10830963-G	0.306095573006719	5E-13		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q14.3	MTNR1B	rs10830963-C	0.7094	4E-105		0.0014	[-0.00019-0.00299] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	11q14.3	MTNR1B	rs10830963-C	0.7055	2E-100		0.0794	[0.072-0.087] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	22508271	Rasmussen-Torvik LJ	2012-04-16	Genet Epidemiol	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.27	1E-12	(Fasting glucose)	1.38	[1.01-1.75] mg/dL increase	Affymetrix [NR] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-?	NR	3E-11	(Glc)	0.14	[0.1-0.18] unit increase	Illumina [~ 7700000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	11q14.3	MTNR1B	rs10830963-G	0.3	3E-43		0.034	[0.026-0.042] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	11q14.3	MTNR1B	rs10830963-G	0.3	6E-175		0.067	[0.061-0.073] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1292	chr11	92708709	92708710	rs10830963	19060907	Prokopenko I	2008-12-01	Nat Genet	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	11q14.3	MTNR1B	rs10830963-G	0.28	3E-50		0.07	[0.06-0.08] mmol/l increase	Affymetrix, Illumina, Perlegen [up to 2557249] (imputed)	N
1292	chr11	92719680	92719681	rs10830964	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	11q14.3	MTNR1B	rs10830964-?	0.88	5E-6		1.61	[1.30-2.00]	Illumina [2380486] (imputed)	N
1292	chr11	92722760	92722761	rs1447352	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	11q14.3	MTNR1B	rs1447352-G	0.42	6E-8	(GLU)	0.05	[0.03-0.06] mmol/l decrease	Illumina [329091]	N
1292	chr11	92725802	92725803	rs4237555	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11q14.3		rs4237555-T	0.5272	4E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1292	chr11	92727088	92727089	rs271043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q14.3	NR	rs271043-A	NR	2E-45		0.0347	[0.03-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1292	chr11	92727088	92727089	rs271043	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q14.3	MTNR1B, SLC36A4	rs271043-A	0.5261	3E-10		0.0107238	[0.0074-0.014] unit increase	Affymetrix [11880941] (imputed)	N
1292	chr11	92741955	92741956	rs768920	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in diabetes	2,795 European ancestry cases, 4,831 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	11q21	NR	rs768920-?		4E-6		1.39	[1.14-1.69]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1292	chr11	92741955	92741956	rs768920	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in diabetes	2,795 European ancestry cases, 4,831 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	11q21	NR	rs768920-?		2E-6	(EA)	1.39	[1.14-1.69]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1292	chr11	92741955	92741956	rs768920	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes	3,345 European ancestry cases, 2,372 European ancestry controls	4,579 European ancestry cases, 7,777 European ancestry controls, 7,272 Asian cases, 8,775 Asian controls, 465 Chinese ancestry cases, 154 Chinese ancestry controls, 156 Indian ancestry cases, 66 Indian ancestry controls, 202 Malay ancestry cases, 21 Malay ancestry controls	11q21	NR	rs768920-?		4E-6	(EA)	1.44	[1.14-1.80]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1292	chr11	92743238	92743239	rs34497534	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11q21	NR	rs34497534-T	0.939	8E-6		0.0331229	[0.019-0.048] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1292	chr11	92769747	92769748	rs271057	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	11q21	MTNR1B, SLC36A4	rs271057-C		5E-18		0.0085	[0.0065-0.0105] unit increase	Affymetrix [13304133] (imputed)	N
1292	chr11	92784202	92784203	rs7931462	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	11q21	RPL26P31	rs7931462-G	0.02	2E-9	(KvDMR 10-11-12)			Illumina [515966]	N
1292	chr11	92792099	92792100	rs7120482	23719583	Kerns SL	2013-05-26	Radiother Oncol	Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.	Adverse response to radiation therapy	79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls	107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls	11q21	MTNR1B, SLC36A4	rs7120482-?	0.29	5E-8		3.1	[1.7-5.6]	Affymetrix [614453]	N
1293	chr11	92834197	92834198	rs614332	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		11q21	NR	rs614332-C	0.39466599999999996	1E-6		1.0698105	[1.1-1.07]	Affymetrix [16499239] (imputed)	N
1293	chr11	92893824	92893825	rs1508608	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q21	SLC36A4	rs1508608-A	0.3199	8E-13		1.0283957		Affymetrix [11880941] (imputed)	N
1293	chr11	92920401	92920402	rs12296063	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	SLC36A4	rs12296063-A	0.0030	2E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
1294	chr11	93013530	93013531	rs57235767	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q21	MTNR1B	rs57235767-C	0.7057	6E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1295	chr11	93093136	93093137	rs12098946	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	CCDC67	rs12098946-A	0.0050	4E-6	(Folate )	0.02	[NR] nmol/L increase	Illumina [899892]	N
1295	chr11	93135426	93135427	rs118105804	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	11q21	NR	rs118105804-?	NR	8E-6		0.9179	[0.55-1.28] unit decrease	Illumina [at least 560000] (imputed)	N
1295	chr11	93161513	93161514	rs186084840	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	11q21		rs186084840-A	NR	9E-6		1.252662	[1.15-1.35]	Illumina [11600722] (imputed)	N
1295	chr11	93162907	93162908	rs11820548	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q21	CCDC67	rs11820548-?		8E-6				Illumina [4322238] (imputed)	N
1295	chr11	93166730	93166731	rs2658782	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	11q21	FLJ25393	rs2658782-?	NR	4E-6	(FEV1/FVC decline in non-asthmatics)	0.1858	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1296	chr11	93210815	93210816	rs2658796	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	11q21	NR	rs2658796-A	0.31	9E-6	(AA)	4.27	[2.47-6.07] bpm increase	Illumina [at least 1100000] (imputed)	N
1296	chr11	93211763	93211764	rs7365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q21		rs7365-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1296	chr11	93212253	93212254	rs2658797	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q21	SMCO4	rs2658797-C	0.517623	1E-8		0.00779058	[0.0051-0.0105] unit increase	Affymetrix [12370749]	N
1296	chr11	93213718	93213719	rs2658799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q21	NR	rs2658799-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1296	chr11	93221104	93221105	rs2605603	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q21	NA	rs2605603-A	0.4812	2E-10		0.0103	[0.0072-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
1296	chr11	93221104	93221105	rs2605603	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q21	NA	rs2605603-A	0.4812	2E-10		0.0103	[0.0072-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
1296	chr11	93259964	93259965	rs2248020	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Insulin levels in response to oral glucose tolerance test (30 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	11q21	SMCO4	rs2248020-A	0.204	9E-6		0.052	[0.028-0.076] unit increase	Illumina [at least 81396]	N
1296	chr11	93269471	93269472	rs11601368	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs11601368-T	NR	1E-11		0.0214	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1296	chr11	93282128	93282129	rs11605469	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q21	SMCO4	rs11605469-C	0.933948	2E-14		0.0060014	[0.0045-0.0075] unit increase	Affymetrix [13995440] (imputed)	N
1296	chr11	93282128	93282129	rs11605469	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	11q21	NR	rs11605469-?	0.0585	9E-6		0.100251	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1296	chr11	93297229	93297230	rs60944979	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Cyclothymic temperament	775 European ancestry individuals	NA	11q21		rs60944979-C	NR	9E-6		0.03295	unit increase	Illumina [2550710] (imputed)	N
1296	chr11	93308187	93308188	rs2155243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q21	Intergenic	rs2155243-A	0.3011	2E-9	(MTAG)	0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1296	chr11	93308187	93308188	rs2155243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q21	Intergenic	rs2155243-G	0.6989	1E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1296	chr11	93308187	93308188	rs2155243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q21	Intergenic	rs2155243-A	0.3009	8E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr11	93372451	93372452	rs186783239	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	11q21	intergenic	rs186783239-C	0.011	4E-6		0.62788	NR	Affymetrix, Illumina [30341632] (imputed)	N
1297	chr11	93392837	93392838	rs11020468	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q21	NR	rs11020468-?	NR	2E-15				Affymetrix [NR]	N
1297	chr11	93404607	93404608	rs117037102	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	11q21	CEP295	rs117037102-T	0.017872	7E-6		0.097937	[0.055-0.141] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1297	chr11	93409447	93409448	rs11020478	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	11q21	KIAA1731	rs11020478-G		4E-6		1.21	[1.02-1.43]	Affymetrix, Illumina [NR] (imputed)	N
1297	chr11	93418568	93418569	rs67182840	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	11q21		rs67182840-T	NR	1E-7		1.1575	unit increase	Illumina [NR] (imputed)	N
1297	chr11	93450133	93450134	rs1784203	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q21	KIAA1731	rs1784203-A	0.0096	1E-8	(EA)	0.0307	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1297	chr11	93450133	93450134	rs1784203	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q21	KIAA1731	rs1784203-A	0.0096	1E-19	(EA, men)	0.0745	[0.058-0.091] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1298	chr11	93462606	93462607	rs7131178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q21	NR	rs7131178-T	0.813	8E-9		0.00804033	[0.0053-0.0108] unit decrease	NR [9732723] (imputed)	N
1298	chr11	93498832	93498833	rs1284108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q21	NR	rs1284108-G	0.4111	1E-10	(C11orf54)	0.0914	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr11	93520314	93520315	rs591709	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	11q21	NR	rs591709-C	0.851	2E-6	(Latino)	1.4285715	[1.23-1.67]	Affymetrix [9737707] (imputed)	N
1298	chr11	93530853	93530857	rs763249105	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	11q21		rs763249105-?	NR	5E-10		0.61668	[0.42-0.81] unit decrease	NR [9800000] (imputed)	N
1299	chr11	93691331	93691332	rs2456568	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	11q21	HPRTP4	rs2456568-?	NR	5E-8	(Response)	1.36	[NR]	Illumina [~ 7000000] (imputed)	N
1299	chr11	93704048	93704049	rs11825709	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q21	HEPHL1	rs11825709-G	0.034	4E-6	(Folate )	0.02	[NR] nmol/L increase	Illumina [899892]	N
1300	chr11	93797934	93797935	rs1945784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	11q21	NR	rs1945784-A	NR	2E-15		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1300	chr11	93797934	93797935	rs1945784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q21	NR	rs1945784-A	NR	6E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1300	chr11	93797934	93797935	rs1945784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs1945784-A	NR	2E-23		0.024	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1300	chr11	93823234	93823235	rs4753124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	11q21	NR	rs4753124-G	NR	9E-36		0.0485	[0.041-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1300	chr11	93823234	93823235	rs4753124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q21	NR	rs4753124-G	NR	4E-38		0.0501	[0.042-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1300	chr11	93823234	93823235	rs4753124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs4753124-G	NR	5E-62		0.0644	[0.057-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1301	chr11	93862019	93862020	rs4753126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q21	PANX1	rs4753126-T	0.502539	5E-9		0.013053044	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1301	chr11	93864392	93864393	rs56175344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q21		rs56175344-G	NR	6E-44		0.0459	[0.039-0.052] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1301	chr11	93864392	93864393	rs56175344	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q21	PANX1	rs56175344-C	0.88	9E-38		12.8	z-score increase	Affymetrix [4314223] (imputed)	N
1301	chr11	93866146	93866147	rs11607757	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	11q21	PANX1	rs11607757-?	NR	7E-49		0.0054	[0.0046-0.0062] unit decrease	Affymetrix [21347608] (imputed)	N
1301	chr11	93866146	93866147	rs11607757	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	11q21	PANX1	rs11607757-?	NR	2E-86		0.0118	[0.01-0.013] unit decrease	Affymetrix [21347608] (imputed)	N
1301	chr11	93870337	93870338	rs7117339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q21		rs7117339-T	NR	8E-65		0.0545	[0.048-0.061] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1301	chr11	93870337	93870338	rs7117339	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	11q21	PANX1	rs7117339-C	0.883397	2E-83		0.0116997	[0.011-0.013] unit increase	Affymetrix [13995440] (imputed)	N
1301	chr11	93870337	93870338	rs7117339	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q21	PANX1	rs7117339-C	0.88	7E-55		15.6	z-score increase	Affymetrix [4312306] (imputed)	N
1301	chr11	93876661	93876662	rs116955087	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	11q21	NR	rs116955087-T	0.01	2E-7		1.97	[1.72-2.22]	Illumina [8468885] (imputed)	N
1301	chr11	93876661	93876662	rs116955087	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	11q21	PANX1	rs116955087-T	0.010630296	4E-6		1.9248666	[1.459030124-2.539434363]	Illumina [10439017] (imputed)	N
1301	chr11	93910079	93910080	rs12796568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q21		rs12796568-T	NR	2E-11		0.1051	[0.074-0.136] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1301	chr11	93911855	93911856	rs2282655	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q21	PANX1	rs2282655-T	0.0725154	5E-11		0.11579321	[0.081-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
1301	chr11	93912637	93912638	rs11822813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	11q21		rs11822813-G	0.235563	9E-13		0.0291992	[0.021-0.037] unit decrease	Illumina [13478956] (imputed)	N
1301	chr11	93912637	93912638	rs11822813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q21		rs11822813-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1301	chr11	93913035	93913036	rs12793348	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	11q21	PANX1	rs12793348-A	0.922	5E-9		1.1111112	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1301	chr11	93913691	93913692	rs12804697	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q21	PANX1	rs12804697-?		5E-12		0.0355	[0.026-0.045] unit decrease	Illumina [31500000] (imputed)	N
1301	chr11	93915465	93915466	rs34834012	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11q21	NR	rs34834012-?	NR	1E-6		1.92	[1.72-2.13]	Illumina [539000] (imputed)	N
1301	chr11	93927385	93927386	rs78910794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	11q21		rs78910794-C	0.174769	4E-20		0.0409336	[0.032-0.05] unit decrease	Illumina [13478866] (imputed)	N
1301	chr11	93931786	93931787	rs1857682	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q21	PANX1, IZUMO1R	rs1857682-?		1E-24		0.0417	[0.034-0.05] unit decrease	Illumina [31500000] (imputed)	N
1302	chr11	94021447	94021448	rs669634	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	11q21	intergenic	rs669634-A	0.28	6E-6		0.133	[0.076-0.19] unit increase	Illumina [6380737] (imputed)	N
1302	chr11	94021447	94021448	rs669634	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bifidobacterium)	1,068 Japanese ancestry individuals	NA	11q21	intergenic	rs669634-A	0.28	5E-6	(female)	0.193	[0.11-0.28] unit increase	Illumina [6380737] (imputed)	N
1302	chr11	94071677	94071678	rs545075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q21		rs545075-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1302	chr11	94080248	94080249	rs116791765	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	11q21	LINC01171, GPR83, MRE11A	rs116791765-T	0.989	2E-8	(Hispanic)	0.345	[0.23-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1303	chr11	94127927	94127928	rs117809089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs117809089-A	NR	3E-11		0.0417	[0.029-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1303	chr11	94131556	94131557	rs12796488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q21	NR	rs12796488-C	0.824019	1E-8		0.0095618	[0.0063-0.0129] unit increase	Affymetrix [16578495] (imputed)	N
1303	chr11	94131556	94131557	rs12796488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q21	NR	rs12796488-C	0.823186	2E-26		0.0412399	[0.033-0.049] unit increase	Affymetrix [16577313] (imputed)	N
1303	chr11	94131556	94131557	rs12796488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q21	NR	rs12796488-C	0.824087	4E-21		0.0248549	[0.02-0.03] unit increase	Affymetrix [16583148] (imputed)	N
1303	chr11	94131556	94131557	rs12796488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11q21	NR	rs12796488-C	0.823117	7E-46		0.0560936	[0.048-0.064] unit increase	Affymetrix [16577424] (imputed)	N
1303	chr11	94132138	94132139	rs3758785	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	11q21	GPR83	rs3758785-G	NR	2E-6	(EA)			Affymetrix [~ 2300000] (imputed)	N
1303	chr11	94170974	94170975	rs7117042	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q21	GPR83	rs7117042-?	NR	6E-6	(TAG 52:2)	0.2360763	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1303	chr11	94217655	94217656	rs659349	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	11q21		rs659349-?	NR	6E-6		0.09	[0.053-0.127] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1303	chr11	94240766	94240767	rs10831235	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q21	MRE11A	rs10831235-?	NR	7E-6	(TAG 50:3)	0.23963353	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1304	chr11	94271662	94271663	rs11020821	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	11q21	FUT4	rs11020821-C	NR	4E-6	(EA)			Affymetrix [~ 2300000] (imputed)	N
1304	chr11	94271662	94271663	rs11020821	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	11q21	FUT4	rs11020821-C	NR	9E-7	(EA)	1.4	[0.79-2.01] unit increase	Affymetrix [~ 2300000] (imputed)	N
1304	chr11	94284528	94284529	rs12279741	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	11q21	FUT4, PIWIL4	rs12279741-G	0.013703728	8E-6		1.8242028	[1.401328759-2.374685998]	Illumina [10439017] (imputed)	N
1304	chr11	94312322	94312323	rs2212361	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	11q21	PIWIL4	rs2212361-C	0.26	9E-7	(maternal warmth)	0.97	[NR] unit decrease	Perlegen [429981]	N
1304	chr11	94317201	94317202	rs11020842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q21	NR	rs11020842-A	NR	4E-9		0.0385	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1304	chr11	94325838	94325839	rs591584	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	11q21	NR	rs591584-G	NR	8E-6		0.1096	[0.061-0.158] SD units increase	NR [10700000] (imputed)	N
1304	chr11	94325838	94325839	rs591584	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q21	FUT4	rs591584-?	NR	8E-6	(asparagine)	0.15306784	[0.086-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1304	chr11	94336502	94336503	rs74717621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs74717621-A	NR	3E-11		0.0432	[0.03-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1304	chr11	94345501	94345502	rs7942260	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	11q21	PIWIL4	rs7942260-?		7E-6		1.4398848	[NR]	Affymetrix [492217] (imputed)	N
1304	chr11	94371150	94371151	rs695068	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q21	FUT4	rs695068-?	NR	3E-6	(allantoin)	0.27948922	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1305	chr11	94391799	94391800	rs72965874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	11q21	NR	rs72965874-C	NR	1E-9		0.0434	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1305	chr11	94407735	94407736	rs12789145	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder in prion disease	Up to 170 cases	NA	11q21	PIWIL4	rs12789145-?	0.084	8E-6				Illumina [518938]	N
1305	chr11	94407735	94407736	rs12789145	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder and prion disease	Up to 170 cases, 5,200 controls	NA	11q21	PIWIL4	rs12789145-?	0.084	4E-6				Illumina [518938]	N
1305	chr11	94420307	94420308	rs3018154	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	11q21	Intergenic	rs3018154-C	0.9111	6E-6		19.9461	[11.92-27.98] unit decrease	Illumina [~ 6000000] (imputed)	N
1305	chr11	94453130	94453131	rs11020924	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	11q21		rs11020924-?	NR	5E-7		0.941784	[0.92-0.97]	NR [685523]	N
1305	chr11	94458033	94458034	rs117762377	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	11q21	NR	rs117762377-G	0.985947	5E-6		0.262	[0.15-0.37] unit increase	NR [9260588] (imputed)	N
1306	chr11	94533443	94533444	rs138059525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q21		rs138059525-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1307	chr11	94667963	94667964	rs10831284	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	11q21	AMOTL1, CWC15, JMJD2D	rs10831284-G	0.13	2E-6				Perlegen [378332]	N
1307	chr11	94695432	94695433	rs1039751	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q21	NR	rs1039751-?	NR	1E-37				Affymetrix [NR]	N
1307	chr11	94723622	94723623	rs12285658	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	11q21	KDM4D	rs12285658-?	NR	2E-6	(dominant )	1.6129031		Affymetrix [NR]	N
1307	chr11	94723622	94723623	rs12285658	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	11q21	KDM4D	rs12285658-?	0.9	4E-6	(AA, dominant )	1.4285715		Affymetrix [NR]	N
1308	chr11	94787429	94787430	rs147256540	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (local efficiency somatomotor)	18,445 British ancestry individuals	NA	11q21		rs147256540-T	0.99	4E-8		0.297	[0.19-0.4] unit decrease	Affymetrix [9926107] (imputed)	N
1308	chr11	94787429	94787430	rs147256540	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (local efficiency default)	18,445 British ancestry individuals	NA	11q21		rs147256540-T	0.99	4E-8		0.296	[0.19-0.4] unit decrease	Affymetrix [9926107] (imputed)	N
1308	chr11	94795233	94795234	rs78164056	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	11q21	RP11-735A19.2, SRSF8	rs78164056-C	0.136	9E-8		0.0787	[0.05-0.108] unit increase	NR [4841651] (imputed)	N
1308	chr11	94828467	94828470	rs10605167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q21	ENDOD1	rs10605167-T	0.7825	6E-20		0.03997559	[0.031-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1308	chr11	94829513	94829514	rs2509814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs2509814-G	0.170723	2E-53				Affymetrix, Illumina [17210439] (imputed)	N
1308	chr11	94829513	94829514	rs2509814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q21	NR	rs2509814-G	0.163162	2E-54		0.040369	[0.035-0.045] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1308	chr11	94833021	94833022	rs641937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q21		rs641937-G	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1308	chr11	94833021	94833022	rs641937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q21	ENDOD1	rs641937-G	0.834762	6E-45		0.04254858	[0.037-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94833688	94833689	rs1150339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs1150339-G	0.801469	5E-17				Affymetrix, Illumina [24588908] (imputed)	N
1308	chr11	94834870	94834871	rs646809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q21	ENDOD1	rs646809-T	0.791691	3E-11		0.01838406	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr11	94834870	94834871	rs646809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q21	NR	rs646809-T	0.791707	5E-18		0.019521	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1308	chr11	94855100	94855101	rs55688751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q21	ENDOD1	rs55688751-G	0.244387	1E-13		0.019435406	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr11	94855100	94855101	rs55688751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q21	ENDOD1	rs55688751-G	0.244429	3E-10		0.016457299	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr11	94855100	94855101	rs55688751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q21	ENDOD1	rs55688751-G	0.244431	2E-10		0.016611384	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr11	94862576	94862577	rs3740861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q21	ENDOD1	rs3740861-T	0.30182	3E-14		0.018617814	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr11	94862576	94862577	rs3740861	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q21	ENDOD1	rs3740861-G	0.69942	4E-9		0.0117704	[0.0078-0.0157] unit decrease	NR [13737936] (imputed)	N
1308	chr11	94862576	94862577	rs3740861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q21		rs3740861-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1308	chr11	94879317	94879318	rs10765711	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11q21		rs10765711-C	NR	3E-8		0.018260965	[0.012-0.025] years increase	NR [7400000] (imputed)	N
1308	chr11	94880124	94880125	rs75887387	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	11q21	NR	rs75887387-G	NR	5E-6		1.1214534	[1.07-1.17]	Illumina [11600722] (imputed)	N
1308	chr11	94885634	94885635	rs632087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q21	RP11-712B9.2	rs632087-T	0.657365	5E-11		0.0153283505	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94885634	94885635	rs632087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q21		rs632087-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1308	chr11	94886631	94886632	rs496321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q21		rs496321-C	NR	2E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1308	chr11	94886631	94886632	rs496321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q21		rs496321-C	NR	5E-29		0.0234	[0.019-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1308	chr11	94886631	94886632	rs496321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q21		rs496321-C	NR	1E-22		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1308	chr11	94886631	94886632	rs496321	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q21		rs496321-T	0.386	1E-28		0.13	[0.1-0.15] % increase	Affymetrix [NR] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.614496	1E-52		0.034952383	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.614529	3E-72		0.041396834	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.61454	3E-37		0.0277727	[0.024-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.614529	4E-26		0.023979722	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q21	NR	rs496321-C	0.613591	8E-11		0.012333	[0.0086-0.016] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs496321-C	0.629941	1E-47				Affymetrix, Illumina [24246363] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q21	NR	rs496321-C	0.613558	1E-47		0.027106	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs496321-C	0.632352	6E-37				Affymetrix, Illumina [20825802] (imputed)	N
1308	chr11	94886631	94886632	rs496321	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q21	NR	rs496321-C	0.614313	1E-35		0.024696	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1308	chr11	94886631	94886632	rs496321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q21		rs496321-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1308	chr11	94886631	94886632	rs496321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q21		rs496321-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1308	chr11	94886631	94886632	rs496321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.6137	5E-14		0.0272383	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1308	chr11	94886631	94886632	rs496321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q21	RP11-712B9.2	rs496321-C	0.6136	1E-11		0.02458067	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1309	chr11	94902170	94902171	rs12361586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q21		rs12361586-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1309	chr11	94908657	94908658	rs11021065	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	11q21	SESN3	rs11021065-T	NR	5E-6		0.01649	[NR] unit increase	Illumina [1124301]	N
1309	chr11	94908657	94908658	rs11021065	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	11q21	SESN3	rs11021065-T	NR	1E-6		0.01487	[NR] unit increase	Illumina [1124301]	N
1309	chr11	94984429	94984430	rs559287647	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	11q21	RP11-712B9.2	rs559287647-T	0.0024	4E-7		0.7319	[0.45-1.02] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1309	chr11	95011644	95011645	rs976337	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11q21	NR	rs976337-T	0.5725	9E-6		0.0149	[0.0083-0.0215] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1309	chr11	95026879	95026880	rs117127571	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	11q21	NR	rs117127571-C	0.035655	3E-6		0.2007131	[0.12-0.28] unit decrease	Illumina [9469131] (imputed)	N
1310	chr11	95077166	95077167	rs3858375	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	11q21	NR	rs3858375-T	0.05	9E-7		1.6	1.33-1.94	NR [8814543] (imputed)	N
1310	chr11	95096034	95096035	rs3911569	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11q21	Intergenic	rs3911569-A	NR	3E-7	(between families)	5.145	unit increase	Affymetrix [up to 15107142] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q21		rs75963851-G	NR	3E-16		0.054	[0.041-0.067] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	11q21		rs75963851-G	0.071927	3E-16		0.0539794	[0.041-0.067] unit decrease	Illumina [13479091] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	11q21		rs75963851-G	0.072561	6E-18		0.0735743	[0.057-0.09] unit decrease	Illumina [13471440] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q21		rs75963851-G	NR	6E-18		0.0736	[0.057-0.09] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs75963851-A	0.984009	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	11q21	NR	rs75963851-A	0.929382	2E-16		0.059243	[0.045-0.073] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	11q21	NR	rs75963851-A	0.928239	3E-16		0.075747	[0.058-0.094] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs75963851-A	0.988816	6E-16				Affymetrix, Illumina [23467995] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	11q21	LOC100129203, FAM76B	rs75963851-?	NR	2E-13		0.0612	[0.045-0.078] unit decrease novel	Illumina [6108953] (imputed)	N
1310	chr11	95096320	95096321	rs75963851	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	11q21	LOC100129203, FAM76B	rs75963851-?	NR	4E-10		0.07002	[0.048-0.092] unit decrease novel	Illumina [6108953] (imputed)	N
1310	chr11	95099864	95099865	rs139203625	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	11q21	NR	rs139203625-T	0.012	4E-11		0.524075	[0.37-0.68] unit increase	Affymetrix [up to 8900000] (imputed)	N
1310	chr11	95099864	95099865	rs139203625	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	11q21	NR	rs139203625-T	0.012	3E-7	(women)	0.742308	[0.46-1.03] unit increase	Affymetrix [up to 8900000] (imputed)	N
1310	chr11	95120371	95120372	rs4121878	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q21	SESN3, FAM76B	rs4121878-C	0.5008	8E-9		1.0221416		Affymetrix [11880941] (imputed)	N
1311	chr11	95177904	95177905	rs10430828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q21	NR	rs10430828-C	NR	1E-9		0.0258	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1311	chr11	95183935	95183936	rs12799680	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q21	SESN3, FAM76B	rs12799680-T	0.91	1E-8		5.67	z-score increase	Affymetrix [4314223] (imputed)	N
1311	chr11	95184354	95184355	rs17625540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q21		rs17625540-A	NR	1E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1311	chr11	95200426	95200427	rs11021169	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	11q21	5S_rRNA	rs11021169-G	0.92	8E-6		1.3	[NR]	Illumina [7659573] (imputed)	N
1311	chr11	95232732	95232733	rs16921999	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	11q21	ENDOD1, SESN3, FAM76B, CEP57, MTMR2	rs16921999-?	NR	1E-6		0.0099	[0.0093-0.0105] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1311	chr11	95282878	95282879	rs7949779	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11q21	LOC100129203, FAM76B	rs7949779-G	0.61	2E-10		0.0056	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1312	chr11	95293752	95293753	rs4753693	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q21	KDM4E, FAM76B	rs4753693-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1312	chr11	95298157	95298158	rs1262221	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q21	LOC100129203, FAM76B	rs1262221-?	NR	5E-9		0.3908	[0.25-0.53] unit increase	Affymetrix [11100000] (imputed)	N
1312	chr11	95298600	95298601	rs10717169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q21		rs10717169-G	NR	2E-11		0.0202	[0.014-0.026] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1312	chr11	95304587	95304588	rs1939882	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q21	NR	rs1939882-C	0.02613	7E-10	(GALE)	0.143	NR unit increase	Illumina [1671387] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q21		rs11021221-A	NR	1E-8		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	11q21	FAM76B	rs11021221-A	NR	1E-9		0.204	[0.14-0.27] unit increase	Affymetrix [7701190] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q21	NR	rs11021221-A	0.170058	2E-21		0.028354865	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q21	NR	rs11021221-A	0.170057	1E-19		0.026974995	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q21		rs11021221-A	0.169898	2E-16		0.024311308	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q21		rs11021221-A	0.170059	4E-36		0.03744853	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q21		rs11021221-A	0.169942	7E-34		0.03600214	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q21		rs11021221-A	0.169947	7E-33		0.035449665	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11q21	FAM76B	rs11021221-T	0.83	3E-8		0.00633	[0.0041-0.0086] unit increase	Affymetrix [at least 8002429] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q21		rs11021221-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11q21	intergenic	rs11021221-A	0.1691	3E-10		0.03028878	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11q21	intergenic	rs11021221-A	0.1691	4E-10		0.03008117	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	11q21	intergenic	rs11021221-A	0.1691	2E-18		0.04172622	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q21	intergenic	rs11021221-A	0.1691	3E-17		0.0404898	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q21	intergenic	rs11021221-A	0.1691	5E-17		0.04021283	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q21	SESN3, FAM76B	rs11021221-T		7E-6		0.223	unit increase	Affymetrix [at least 2696785] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q21	SESN3, FAM76B	rs11021221-T		5E-6	(EA)	0.244	unit increase	Affymetrix [at least 2696785] (imputed)	N
1312	chr11	95308853	95308854	rs11021221	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q21	SESN3, FAM76B	rs11021221-T		3E-11		0.213	unit increase	Affymetrix [at least 2696785] (imputed)	N
1312	chr11	95309670	95309671	rs140606801	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11q21	RP11-338H14.1	rs140606801-A	0.991	3E-6		0.2425	[0.14-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1312	chr11	95311259	95311260	rs12575636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q21		rs12575636-G	NR	5E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1312	chr11	95311259	95311260	rs12575636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q21		rs12575636-G	0.189432	1E-10		0.018594738	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1312	chr11	95311259	95311260	rs12575636	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q21	NR	rs12575636-T	0.8108	3E-18		0.00961297	[0.0075-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
1312	chr11	95311259	95311260	rs12575636	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q21	NR	rs12575636-T	0.8108	5E-17		0.0100341	[0.0077-0.0124] unit increase	Affymetrix [16582965] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	11q21		rs4409785-C	0.174	2E-7		1.29	[1.18-1.41]	Illumina [24006246] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q21		rs4409785-C	NR	2E-35		0.1453	[0.12-0.17] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	11q21		rs4409785-C	NR	8E-16		0.1069	[0.081-0.133] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	11q21		rs4409785-C	NR	7E-9		0.2029	[0.13-0.27] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q21	NR	rs4409785-C	NR	3E-15		0.0262	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q21		rs4409785-T	NR	8E-9		0.91	[0.88-0.94]	NR [13810676] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q21		rs4409785-C	0.17243	2E-11		0.019728245	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q21	NR	rs4409785-C	0.172343	4E-10		0.016435	[0.011-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	11q21	NR	rs4409785-C	0.171	2E-31		1.15	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q21	LOC100129203	rs4409785-C	NR	7E-12		1.0874293	NR	Affymetrix, Illumina [8278136] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q21	RP11-338H14.1	rs4409785-C	0.172241	2E-32		0.14306402	[0.12-0.17] unit increase	Affymetrix [7288503] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q21		rs4409785-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q21		rs4409785-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	11q21		rs4409785-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q21	CEP57	rs4409785-T	NR	3E-8		0.124011	[0.037-0.211] unit decrease	Illumina [8380626] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and LDL levels (pleiotropy)	215,725 individuals	NA	11q21	FAM76B	rs4409785-?	NR	6E-6			[0.8432-0.9405]	NR [2491989]	N
1312	chr11	95311421	95311422	rs4409785	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q21	CEP57	rs4409785-C	0.17	4E-9	(EA)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q21	CEP57	rs4409785-C	0.15	1E-11		1.12	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1312	chr11	95311421	95311422	rs4409785	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	11q21	intergenic	rs4409785-C	0.173	5E-6		1.21	[1.11-1.31]	Illumina [103875]	N
1312	chr11	95311421	95311422	rs4409785	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	11q21	Intergenic	rs4409785-C	0.173	8E-8		1.23	[1.14-1.33]	Illumina [103875]	N
1312	chr11	95311421	95311422	rs4409785	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	11q21	TYR	rs4409785-C	0.19	2E-13		1.34	[NR]	Illumina [495821]	N
1312	chr11	95311421	95311422	rs4409785	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q21	intergenic	rs4409785-G	NR	6E-7		1.1	[1.09-1.12]	Illumina [465434]	N
1312	chr11	95320807	95320808	rs11021232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q21		rs11021232-C	NR	1E-9		0.0171	[0.012-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q21		rs11021232-C	0.180996	1E-10		0.018705234	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q21	FAM76B	rs11021232-T	0.819041	2E-11		0.0167738	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q21	FAM76B	rs11021232-T	0.818996	1E-10		0.0164804	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q21	NR	rs11021232-T	0.820213	4E-17		0.0134515	[0.01-0.017] unit increase	Affymetrix [16585854] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q21	NR	rs11021232-T	0.820213	2E-13		0.013416	[0.0098-0.0171] unit increase	Affymetrix [16585866] (imputed)	N
1312	chr11	95320807	95320808	rs11021232	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11q21	Intergenic	rs11021232-C	0.1899	2E-23		1.335	[1.26-1.41]	Illumina [8966411] (imputed)	N
1312	chr11	95320985	95320986	rs11021233	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q21		rs11021233-A	0.15	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
1312	chr11	95320985	95320986	rs11021233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	11q21	NR	rs11021233-A	NR	2E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1312	chr11	95327373	95327374	rs2186739	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q21	NR	rs2186739-?	NR	9E-6		0.0077138	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1312	chr11	95348024	95348025	rs10765754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q21		rs10765754-G	NR	1E-13		0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1312	chr11	95348024	95348025	rs10765754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q21		rs10765754-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1312	chr11	95379506	95379507	rs1255523	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	11q21	Intergenic	rs1255523-?		6E-6				NR [NR]	N
1312	chr11	95380753	95380754	rs73519353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q21	NR	rs73519353-A	0.00328700000000004	9E-17		0.0612933	[0.046-0.077] unit increase	Affymetrix [16582909] (imputed)	N
1312	chr11	95380753	95380754	rs73519353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q21	NR	rs73519353-A	0.0033680000000000376	2E-10		0.0699514	[0.047-0.092] unit increase	Affymetrix [16585854] (imputed)	N
1312	chr11	95380753	95380754	rs73519353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q21	NR	rs73519353-A	0.00328700000000004	9E-16		0.0666151	[0.049-0.084] unit increase	Affymetrix [16582965] (imputed)	N
1312	chr11	95380753	95380754	rs73519353	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q21	NR	rs73519353-A	0.0033680000000000376	3E-9		0.0752318	[0.049-0.101] unit increase	Affymetrix [16585866] (imputed)	N
1313	chr11	95421829	95421830	rs56095240	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q21	LOC100129203	rs56095240-A	NR	1E-9		1.108156	NR	Affymetrix, Illumina [8278136] (imputed)	N
1313	chr11	95421829	95421830	rs56095240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q21		rs56095240-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1313	chr11	95422866	95422867	rs1939875	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	11q21	NR	rs1939875-T	0.26	3E-6		1.54	[1.22-1.93]	Illumina [~ 550000]	N
1313	chr11	95425469	95425470	rs59183580	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q21	NR	rs59183580-A	0.8707	2E-8		1.0513036	[1.03-1.07]	Affymetrix [15688218] (imputed)	N
1313	chr11	95425469	95425470	rs59183580	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q21	NR	rs59183580-A	0.8707	2E-9		1.0503098	[1.03-1.07]	Affymetrix [15688218] (imputed)	N
1313	chr11	95425469	95425470	rs59183580	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q21	RP11-644L4.1	rs59183580-G	0.130354	2E-8		0.075851336	[0.049-0.102] unit increase	Affymetrix [7288503] (imputed)	N
1313	chr11	95425469	95425470	rs59183580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q21		rs59183580-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1313	chr11	95425525	95425526	rs59593577	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q21	SESN3, FAM76B	rs59593577-C	0.87	2E-11		1.053	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1313	chr11	95434060	95434061	rs10765762	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	11q21	FAM76B	rs10765762-T	0.458739	2E-9		5.98	unit decrease	NR [10847151] (imputed)	N
1313	chr11	95460621	95460622	rs66878487	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	11q21	NR	rs66878487-?	NR	8E-7		0.1586	[0.096-0.221] unit decrease	Illumina [at least 560000] (imputed)	N
1313	chr11	95472096	95472097	rs1255179	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q21		rs1255179-G	0.49	4E-26		10.58	z score increase	Affymetrix [9061022] (imputed)	N
1313	chr11	95490753	95490754	rs17207890	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	11q21	NR	rs17207890-?		7E-12		0.015694	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1313	chr11	95491684	95491685	rs1616015	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	11q21		rs1616015-?	NR	9E-13				NR [9705931] (imputed)	N
1313	chr11	95491692	95491692	rs5793745	32920024	Sanna M	2020-09-10	J Invest Dermatol	Looking for Sunshine: Genetic Predisposition to Sun-Seeking in 265,000 Individuals of European Ancestry.	Sun-seeking behavior	261,915 European ancestry individuals	NA	11q21	FAM76B, MTMR2, CEP57	rs5793745-G		4E-9				Affymetrix, Illumina [8385325] (imputed)	N
1313	chr11	95492877	95492878	rs12146644	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q21		rs12146644-A	0.618	1E-11		0.08	[0.06-0.1] % increase	Affymetrix [NR] (imputed)	N
1313	chr11	95492877	95492878	rs12146644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q21		rs12146644-G	0.382357	1E-13		0.0159437	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1313	chr11	95492877	95492878	rs12146644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q21		rs12146644-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1313	chr11	95492877	95492878	rs12146644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q21		rs12146644-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1313	chr11	95533556	95533557	rs502521	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q21	NR	rs502521-?	NR	2E-7		5.25	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1313	chr11	95534411	95534412	rs117154762	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q21	FAM76B	rs117154762-A	NR	9E-6	(G_Faecalitalea_HB)	1.406	[0.78-2.03] unit increase	Illumina [7711310] (imputed)	N
1313	chr11	95537357	95537358	rs3017756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q21		rs3017756-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1313	chr11	95541507	95541508	rs535819	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q21		rs535819-T	0.6157	5E-8		39.788548	z score increase	NR [6814003]	N
1313	chr11	95541507	95541508	rs535819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q21	NR	rs535819-C	0.384093	1E-19		0.018062	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1313	chr11	95543714	95543715	rs488476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q21		rs488476-C	0.6191	8E-15		0.0113	[0.0084-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1313	chr11	95543714	95543715	rs488476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q21	Intergenic	rs488476-C	0.6191	2E-17	(MTAG)	0.0115	[0.0088-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1313	chr11	95544390	95544391	rs1255223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q21	Intergenic	rs1255223-A	0.6069	1E-11	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1313	chr11	95544390	95544391	rs1255223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q21	Intergenic	rs1255223-A	0.6155	2E-15	(MTAG)	0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1313	chr11	95547926	95547927	rs2508713	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q21	NR	rs2508713-A	NR	6E-9		5.819	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1314	chr11	95561681	95561682	rs602512	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11q21	NR	rs602512-G	0.37674	4E-11		0.042825654	[0.03-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1314	chr11	95561681	95561682	rs602512	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11q21	Intergenic	rs602512-A	0.386	3E-11		0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1314	chr11	95564258	95564259	rs644799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q21	NR	rs644799-G	0.383453	7E-17		0.015583	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1314	chr11	95564258	95564259	rs644799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q21	NR	rs644799-G	0.382143	5E-15		0.015511	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1314	chr11	95564258	95564259	rs644799	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	11q21	CEP57	rs644799-A	NR	1E-9		0.018498499	[0.013-0.024] unit decrease	Affymetrix [NR]	N
1314	chr11	95564258	95564259	rs644799	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	11q21	CEP57	rs644799-?	NR	2E-9		6.011	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1314	chr11	95565287	95565288	rs7902	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q21	MTMR2	rs7902-A	0.5531	5E-15		0.0149	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1314	chr11	95566565	95566566	rs775823662	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q21	MTMR2	rs775823662-T	0.0011	1E-6		1.4884	[0.89-2.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1314	chr11	95580925	95580926	rs566204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs566204-A	0.363393	6E-17				Affymetrix, Illumina [20825802] (imputed)	N
1314	chr11	95583994	95583995	rs474442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs474442-A	0.626789	6E-18				Affymetrix, Illumina [22063850] (imputed)	N
1314	chr11	95584195	95584195	rs36142511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q21	MTMR2	rs36142511-GA	0.382016	1E-20		0.021302337	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1314	chr11	95586200	95586200	rs199508432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q21	MTMR2	rs199508432-TTA	0.388734	6E-14		0.017098328	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1314	chr11	95586981	95586982	rs662168	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q21	NR	rs662168-T	0.4477	3E-12				NR [9056863] (imputed)	N
1314	chr11	95607745	95607746	rs1254755	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q21	NR	rs1254755-C	0.3881	5E-15				NR [9056863] (imputed)	N
1314	chr11	95608587	95608588	rs537994	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q21		rs537994-A	0.38	4E-20		9.19	z score increase	Affymetrix [9061022] (imputed)	N
1314	chr11	95641774	95641775	rs523934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q21	NR	rs523934-?	NR	1E-7		5.334	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1314	chr11	95656361	95656362	rs10765775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q21		rs10765775-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1314	chr11	95656363	95656364	rs10765776	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	11q21	CEP57	rs10765776-A	0.384746	2E-8		5.59	unit decrease	NR [10847151] (imputed)	N
1314	chr11	95656647	95656648	rs7110786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs7110786-T	0.407201	3E-19				Affymetrix, Illumina [24246363] (imputed)	N
1314	chr11	95657110	95657111	rs3824874	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q21		rs3824874-T	0.5951	5E-9		44.70354	z score increase	NR [6814003]	N
1314	chr11	95657110	95657111	rs3824874	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q21		rs3824874-T	0.6061	4E-14	(conditional-joint)	0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1314	chr11	95675477	95675478	rs79068879	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q21	NR	rs79068879-G	0.01568	2E-8	(FDXR)	0.03171	NR unit increase	Illumina [1671387] (imputed)	N
1315	chr11	95710492	95710493	rs7130522	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q21	NR	rs7130522-C	0.3293	5E-8		0.0222	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1315	chr11	95723324	95723325	rs607816	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q21	MAML2	rs607816-?	NR	8E-9		0.012457913	[0.0082-0.0167] unit decrease	NR [7306098]	N
1315	chr11	95747336	95747337	rs7107785	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	11q21	MAML2	rs7107785-T	0.479	4E-10		1.16	1.11-1.21	Illumina [at least 6769856] (imputed)	N
1315	chr11	95750174	95750175	rs12575589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q21		rs12575589-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1315	chr11	95795806	95795807	rs12800440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q21	MAML2	rs12800440-T	0.234877	8E-10		0.016288199	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1315	chr11	95795806	95795807	rs12800440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q21	MAML2	rs12800440-T	0.234863	2E-9		0.015832132	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1315	chr11	95796906	95796907	rs10831475	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	11q21		rs10831475-A	0.8113	6E-12		1.0776685	[1.054889891-1.100939171]	Affymetrix, Illumina [NR] (imputed)	N
1316	chr11	95826484	95826485	rs61749253	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q21	NR	rs61749253-C	0.0122	2E-8	(USP5)	0.1533	NR unit increase	Illumina [1671387] (imputed)	N
1316	chr11	95830732	95830733	rs77774900	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	11q21	NR	rs77774900-?	NR	8E-6		1.1285	[1.0701-1.1900]	Illumina [7437091] (imputed)	N
1316	chr11	95834688	95834689	rs12799722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q21	Intergenic	rs12799722-A	0.385	7E-10	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1316	chr11	95837673	95837674	rs11021432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q21		rs11021432-A	0.3692	1E-12		0.0103	[0.0074-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1316	chr11	95838004	95838005	rs7108077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q21	Intergenic	rs7108077-A	0.62	3E-14	(MTAG)	0.0102	[0.0077-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1316	chr11	95852182	95852183	rs41518446	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q21	NR	rs41518446-?	NR	1E-6				Affymetrix [NR]	N
1316	chr11	95852733	95852734	rs10765790	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q21		rs10765790-C	0.5523	2E-8		0.1554	[0.1-0.21] unit increase	Illumina [18030777] (imputed)	N
1316	chr11	95866699	95866700	rs10765792	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	11q21	intergenic	rs10765792-?	0.11	8E-13	(Recessive)	1.54	[1.37-1.72]	Affymetrix [319222]	N
1316	chr11	95884016	95884017	rs511141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q21	NR	rs511141-G	0.654821	1E-10		0.012989	[0.009-0.017] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1316	chr11	95895138	95895139	rs511797	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q21	CCDC82	rs511797-?	NR	4E-6	(thiamine)	0.24566479	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1316	chr11	95895551	95895552	rs115019323	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	11q21	NR	rs115019323-A	NR	5E-6	(Hispanic)	7.12	[4.13-10.12] unit increase	Affymetrix [14000000] (imputed)	N
1316	chr11	95904627	95904628	rs61901888	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MAML2	rs61901888-?	NR	3E-8	(male)	2.13835	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1316	chr11	95928211	95928212	rs12788404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q21	NR	rs12788404-T	0.291761	6E-11		0.013374	[0.0094-0.0174] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1316	chr11	95928211	95928212	rs12788404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs12788404-T	0.251871	9E-11				Affymetrix, Illumina [24653286] (imputed)	N
1316	chr11	95928211	95928212	rs12788404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q21	NR	rs12788404-T	0.291505	1E-12		0.014466	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1316	chr11	95928211	95928212	rs12788404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q21	NR	rs12788404-T	0.253576	6E-11				Affymetrix, Illumina [24558453] (imputed)	N
1316	chr11	95928211	95928212	rs12788404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q21	NR	rs12788404-T	0.291563	5E-13		0.014779	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1316	chr11	95931484	95931485	rs479825	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		11q21	MAML2	rs479825-?	NR	6E-6		1.64	[NR]	Illumina [up to 810372] (imputed)	N
1317	chr11	95964518	95964519	rs7938889	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	11q21	MAML2	rs7938889-T	0.39151279373368153	6E-6	(AA)	0.3338	[0.19-0.48] unit increase	Illumina [at least 988306] (imputed)	N
1317	chr11	95978218	95978219	rs485642	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q21	NR	rs485642-G	0.283249	2E-10		0.0219816	[0.015-0.029] unit increase	NR [19129689] (imputed)	N
1317	chr11	95992128	95992129	rs11021499	31855235	McComish BJ	2019-12-19	JAMA Ophthalmol	Association of Genetic Variation With Keratoconus.	Keratoconus	522 European ancestry cases, 655 European ancestry controls	818 European ancestry cases, 3,858 European ancestry controls	11q21	MAML2	rs11021499	NR	1E-7		5.32	[NR] z score increase	Illumina [6252612] (imputed)	N
1317	chr11	95992128	95992129	rs11021499	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	11q21	MAML2	rs11021499-A	NR	2E-6		0.39	[NR] unit decrease	Affymetrix [706791]	N
1317	chr11	95995447	95995448	rs11021504	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	11q21	MAML2	rs11021504-A	0.51	8E-9		0.083	[0.054-0.112] unit increase	Affymetrix [1532051] (imputed)	N
1317	chr11	96000099	96000100	rs7115578	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	11q21	MAML2	rs7115578-A	NR	8E-6		1.86	[1.23-2.79]	Affymetrix [476796]	N
1317	chr11	96011350	96011351	rs4598633	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	11q21	MAML2	rs4598633-?	0.32	6E-7		3.9	[NR]	Affymetrix [547296]	N
1317	chr11	96023213	96023214	rs485842	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		11q21	MAML2	rs485842-A	0.261	2E-6		0.055	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1317	chr11	96023426	96023427	rs483905	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11q21	MAML2	rs483905-?		7E-7				Illumina [9578670] (imputed)	N
1317	chr11	96023426	96023427	rs483905	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q21	NR	rs483905-A	0.289	3E-10	(EA)	1.0887091	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1317	chr11	96023426	96023427	rs483905	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q21	NR	rs483905-A	0.289	7E-8	(EA)	1.0595956	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1317	chr11	96023426	96023427	rs483905	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	11q21	MAML2, JRKL	rs483905-A	0.292	1E-8		1.056	[1.017-1.096]	Affymetrix, Illumina [1230000] (imputed)	N
1317	chr11	96058302	96058303	rs11021537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q21		rs11021537-A	NR	3E-11		0.0354	[0.025-0.046] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1318	chr11	96095781	96095782	rs147920230	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q21	CCDC82	rs147920230-A	0.9947	2E-6		0.8983	[0.52-1.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1318	chr11	96108427	96108428	rs7118648	23793441	Davis MF	2013-06-21	Hum Genet	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls	NA	11q21	CCDC82	rs7118648-G	0.03	2E-7				Affymetrix [622812]	N
1320	chr11	96467131	96467132	rs4594032	31834638	Gloaguen E	2019-12-13	Ann Hum Genet	General regression model: A "model-free" association test for quantitative traits allowing to test for the underlying genetic model.	Hemoglobin A1c levels	695 individuals	NA	11q21	NR	rs4594032-?	0.41	2E-7				Illumina [301183]	N
1321	chr11	96562959	96562960	rs2033837	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	11q21	NR	rs2033837-C	0.1291	7E-6		0.2168	[0.12-0.31] unit increase	Illumina [NR] (imputed)	N
1321	chr11	96569258	96569259	rs10789640	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	11q21	LOC105369443	rs10789640-G		2E-6		1.92	[1.46-2.51]	Illumina [1909910] (imputed)	N
1321	chr11	96580520	96580522	rs145054295	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hypertension	11,863 African American cases, 8,663 Hispanic/Latino cases, 3,102 Asian ancestry cases, 2,645 Native Hawaiian ancestry cases, 342 Native American ancestry cases, 508 cases, 5,289 African American controls, 13,273 Hispanic/Latino controls, 1,561 Asian ancestry controls, 1,060 Native Hawaiian ancestry controls, 293 Native American ancestry controls, 542 controls	NA	11q21	JRKL	rs145054295-?	NR	4E-8		0.4254598	[0.27-0.58] unit decrease	Illumina [28263875] (imputed)	N
1322	chr11	96636767	96636768	rs11215126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q21	Intergenic	rs11215126-A	0.3512	1E-8	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1322	chr11	96636767	96636768	rs11215126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q21	Intergenic	rs11215126-A	0.3512	3E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1322	chr11	96667408	96667409	rs1155410	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	11q21	intergenic	rs1155410-?		2E-6				NR [~ 3000000] (imputed)	N
1323	chr11	96809029	96809030	rs1944782	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11q21	intergenic	rs1944782-G	NR	2E-6		1.36	[1.20-1.54]	NR [7738399] (imputed)	N
1323	chr11	96818702	96818703	rs1944788	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11q21	intergenic	rs1944788-C	NR	9E-7		1.37	[1.21-1.55]	NR [7738399] (imputed)	N
1323	chr11	96841813	96841814	rs17275283	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	11q21	Intergenic	rs17275283-C	NR	6E-7		1.37	[1.21-1.55]	NR [7738399] (imputed)	N
1324	chr11	96898236	96898237	rs10160713	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	11q21	LOC100131233, MAML2	rs10160713-A	0.94	1E-6	(Hispanic)	4.5454545	[2.5-8.33]	Affymetrix [at least 730985] (imputed)	N
1324	chr11	96953895	96953896	rs371319602	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (trunk)	3,000 Qatari ancestry individuals	NA	11q21		rs371319602-?	NR	6E-8				Illumina [1084750]	N
1324	chr11	96959524	96959525	rs11224899	22648509	Wang KS	2012-05-31	J Mol Neurosci	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NA	11q21	JRKL	rs11224899-T	0.04	2E-6		1.8989	[NR]	Affymetrix [729454]	N
1325	chr11	97015873	97015874	rs1793368	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	11q21	Intergenic	rs1793368-?		2E-6				NR [NR]	N
1326	chr11	97131479	97131480	rs61894278	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	11q21	RP11-882G5.1	rs61894278-G	0.53	9E-6		0.37	[0.21-0.53] unit increase	Illumina [5833901] (imputed)	N
1329	chr11	97574983	97574984	rs11212364	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	11q22.1	AP005434.1	rs11212364-A	0.03	3E-6	(2-choice RT)	0.26	[0.16-0.36] unit decrease	Illumina [~ 610000]	N
1329	chr11	97629727	97629728	rs76342087	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	11q22.1		rs76342087-A	0.0172327	1E-8		0.0812551	[0.053-0.109] unit increase	Illumina [7980478] (imputed)	N
1329	chr11	97629727	97629728	rs76342087	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	11q22.1		rs76342087-A	0.0172327	5E-9		0.101913	[0.068-0.136] unit increase	Illumina [7980478] (imputed)	N
1330	chr11	97682563	97682564	rs2405657	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	11q22.1	NR	rs2405657-?	0.66	3E-6		1.19	[NR]	Illumina [292768]	N
1330	chr11	97708959	97708960	rs111797929	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.1	NR	rs111797929-A	0.0122	1E-8	(ACSS3)	0.2029	NR unit increase	Illumina [1671387] (imputed)	N
1330	chr11	97736448	97736449	rs1815909	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	11q22.1	LOC105369443, CNTN5	rs1815909-T	0.8189	7E-6		0.1619	[0.091-0.233] unit increase	NR [NR] (imputed)	N
1330	chr11	97759819	97759820	rs6589075	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	11q22.1	NR	rs6589075-T	0.118184092	3E-7		0.2592224	[0.16-0.36] unit increase	Affymetrix [536506]	N
1332	chr11	97944151	97944152	rs187222839	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	JRKL-AS1, CNTN5	rs187222839-T		9E-9		2.186	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1332	chr11	97946250	97946251	rs61905845	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	11q22.1	RP11-379J13.2	rs61905845-G	0.18	8E-6		0.54	[0.3-0.78] unit increase	Illumina [5833901] (imputed)	N
1332	chr11	98005767	98005768	rs35342385	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	11q22.1	Intergenic	rs35342385-?		5E-6				Illumina [301908]	N
1333	chr11	98087598	98087599	rs2848479	27548383	Ortiz-Fernandez L	2016-08-22	PLoS One	Genetic Analysis with the Immunochip Platform in Behcet Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci.	Behcet's disease	278 Spanish ancestry cases, 1,517 Spanish ancestry controls	up to 130 Spanish ancestry cases, up to 605 Spanish ancestry controls	11q22.1	JRKL, CNTN5	rs2848479-A	0.401	3E-10		1.66	[1.24-1.94]	Illumina [133018]	N
1333	chr11	98125403	98125404	rs2509843	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11q22.1	CNTN5	rs2509843-?	NR	2E-7		1.2684	[NR]	Affymetrix [722112]	N
1334	chr11	98243230	98243231	rs1384206	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	11q22.1	CNTN5	rs1384206-G		1E-7		15.6	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
1335	chr11	98341980	98341981	rs1871888	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length or spherical error (univariate decomposition analysis)	1,055 individuals	NA	11q22.1	NR	rs1871888-?	NR	4E-6				NR [500025]	N
1336	chr11	98466267	98466268	rs4237591	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	11q22.1	intergenic	rs4237591-G	0.35	2E-6		0.33	[NR] unit decrease	Illumina [324623]	N
1336	chr11	98500409	98500410	rs2438321	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Total glycated albumin levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	11q22.1	CNTN5	rs2438321-G	0.11	2E-6	(AA)	0.05	[0.032-0.068] unit increase	Affymetrix [NR] (imputed)	N
1336	chr11	98500409	98500410	rs2438321	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Fructosamine levels	7,647 European ancestry individuals, 2,104 Black individuals	1,304 European ancestry individuals, 608 Black individuals	11q22.1	CNTN5	rs2438321-G	0.11	3E-8	(AA)	0.03	[0.020-0.040] unit increase	Affymetrix [NR] (imputed)	N
1337	chr11	98591840	98591841	rs35119798	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q22.1	RP11-115E19.1	rs35119798-T	0.0163	1E-6		0.1482	[0.089-0.208] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1337	chr11	98601050	98601051	rs56259952	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	11q22.1	NR	rs56259952-C	0.115247	9E-6				Illumina [5378266] (imputed)	N
1337	chr11	98652864	98652865	rs79958367	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.1	NR	rs79958367-C	0.0122	1E-8	(RAB14)	0.02129	NR unit increase	Illumina [1671387] (imputed)	N
1337	chr11	98685497	98685498	rs10750135	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	11q22.1	intergenic	rs10750135-G	NR	2E-6		0.674313	[0.39-0.95] unit increase	Illumina [5842835] (imputed)	N
1338	chr11	98705231	98705232	rs12362161	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	11q22.1	NR	rs12362161-?	NR	1E-6	(EA)	4.488916	[2.72-6.26] unit increase	Affymetrix [at least 600000] (imputed)	N
1338	chr11	98723215	98723216	rs11217223	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.1	CNTN5	rs11217223-G	0.09	6E-6	(Moderate&vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1338	chr11	98723215	98723216	rs11217223	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.1	CNTN5	rs11217223-G	0.09	1E-6	(Moderate activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1340	chr11	99037997	99037998	rs4643043	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.1	NR	rs4643043-T	0.02439	6E-9	(CKB)	0.02315	NR unit increase	Illumina [1671387] (imputed)	N
1340	chr11	99051521	99051522	rs4316475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.1	CNTN5	rs4316475-A	0.922	3E-16	(Contactin-5, CNTN5.3299.29.2)	0.39	[0.29-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1340	chr11	99065260	99065261	rs1461680	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q22.1	Intergenic	rs1461680-A	0.4606	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1340	chr11	99086507	99086508	rs11218881	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q22.1	NR	rs11218881-?	NR	5E-7		0.008681	[0.0053-0.0121] unit increase	Affymetrix [805426] (imputed)	N
1341	chr11	99126015	99126016	rs6589988	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q22.1	NR	rs6589988-G	0.3243	5E-9		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1341	chr11	99127251	99127252	rs10893002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q22.1	Intergenic	rs10893002-A	0.3397	1E-8	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr11	99127251	99127252	rs10893002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q22.1	Intergenic	rs10893002-T	0.6596	5E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1341	chr11	99129275	99129276	rs7117121	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q22.1		rs7117121-?	NR	6E-6		1.0660375	[1.03696773563107-1.09592230716221]	Illumina [up to 7827597] (imputed)	N
1341	chr11	99140817	99140818	rs17576589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q22.1	Intergenic	rs17576589-T	0.3394	6E-11	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr11	99152800	99152801	rs17577073	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q22.1	CNTN5	rs17577073-A	0.5636	2E-10		1.0249051		Affymetrix [11880941] (imputed)	N
1341	chr11	99152800	99152801	rs17577073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q22.1		rs17577073-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1341	chr11	99160501	99160502	rs12283068	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q22.1	NR	rs12283068-A	0.4	8E-8		0.00591272	[0.0038-0.0081] unit increase	NR [9732723] (imputed)	N
1341	chr11	99169655	99169656	rs2406916	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q22.1	NA	rs2406916-G	0.3408	2E-9	(Female)	1.048218	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1341	chr11	99175377	99175378	rs1461672	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q22.1	CNTN5	rs1461672-T	0.06130653	2E-18	(EA, Contactin-5)	0.734	[0.57-0.9] unit increase	Affymetrix [509946]	N
1341	chr11	99180042	99180043	rs1461674	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11q22.1	NR	rs1461674-?	NR	1E-11	(Contactin-5)	0.23	[0.16-0.3] unit increase	Illumina [4020654] (imputed)	N
1341	chr11	99187881	99187882	rs1461677	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11q22.1	CNTN5	rs1461677-T	0.0781	1E-12	(CNTN5)	0.67881	[0.49-0.87] unit increase	Illumina [8683751] (imputed)	N
1341	chr11	99204252	99204253	rs2614546	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.1	CNTN5	rs2614546-T	0.92765625	2E-10	(CNTN5, 3299_29_2)	0.29890683	[0.21-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1341	chr11	99208139	99208140	rs282486	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN5	5,335 Icelandic ancestry individuals	NA	11q22.1		rs282486-G	0.09344	4E-18		0.248087	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
1342	chr11	99222348	99222349	rs1394461	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	11q22.1	CNTN5	rs1394461-C	0.2513	4E-8	(EA, women)	0.0347	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1342	chr11	99240469	99240470	rs1504712	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	11q22.1	NR	rs1504712-G	NR	5E-6		0.084	[0.049-0.119] unit decrease	Illumina [6319684] (imputed)	N
1342	chr11	99268616	99268617	rs1504721	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	11q22.1	NR	rs1504721-C	0.397784	4E-6		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1342	chr11	99268616	99268617	rs1504721	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11q22.1	NR	rs1504721-C	NR	2E-8		1.0204082		NR [NR] (imputed)	N
1342	chr11	99268715	99268716	rs1504722	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	11q22.1	NR	rs1504722-G	0.397333	9E-6		1.137	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
1342	chr11	99276801	99276802	rs79705697	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11q22.1	CNTN5	rs79705697-A	NR	6E-6		0.36387074	[0.2-0.53] unit decrease	Illumina [> 6200000] (imputed)	N
1342	chr11	99298992	99298993	rs113262272	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	11q22.1	CNTN5	rs113262272-A	0.71	4E-6		1.93	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1342	chr11	99351730	99351731	rs10893396	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	11q22.1	CNTN5	rs10893396-C	0.17	4E-7		0.15	[0.091-0.209] g/cm2 increase	Illumina [NR] (imputed)	N
1343	chr11	99369449	99369450	rs72991567	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	11q22.1	NR	rs72991567-G	0.0804	3E-6		67.0	[39-95] unit increase	NR [9714326] (imputed)	N
1343	chr11	99370643	99370644	rs10893420	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	11q22.1	CNTN5	rs10893420-?	NR	7E-6	(EA)			Illumina [7205781] (imputed)	N
1343	chr11	99376913	99376914	rs1553515	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	11q22.1	CNTN5	rs1553515-C	0.94	2E-6		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1343	chr11	99392677	99392678	rs10790767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q22.1		rs10790767-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1343	chr11	99392677	99392678	rs10790767	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q22.1	NR	rs10790767-T	NR	4E-8		5.481	z score increase	Affymetrix [10847151] (imputed)	N
1343	chr11	99450838	99450839	rs143716624	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	11q22.1	NR	rs143716624-?	NR	1E-5		1.4697	[1.30-1.64]	Illumina [NR] (imputed)	N
1344	chr11	99493172	99493173	rs10501920	17903304	Larson MG	2007-09-19	BMC Med Genet	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 cases and 1,190 controls from 310 families	NA	11q22.1	CNTN5	rs10501920-?	NR	9E-6				Affymetrix [70897]	N
1344	chr11	99495692	99495693	rs636504	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q22.1		rs636504-?	NR	4E-8				NR [NR]	N
1344	chr11	99495692	99495693	rs636504	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q22.1		rs636504-?	NR	4E-8				NR [NR]	N
1344	chr11	99496553	99496554	rs1690818	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	11q22.1	NR	rs1690818-T	NR	6E-8		5.4051075	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1344	chr11	99496848	99496849	rs1690816	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	11q22.1	NR	rs1690816-C	0.3134	3E-9		0.0178	[0.012-0.024] unit increase	Illumina [NR] (imputed)	N
1344	chr11	99496848	99496849	rs1690816	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11q22.1	NR	rs1690816-C	0.3134	3E-6		0.0173	[0.01-0.025] unit increase	Illumina [NR] (imputed)	N
1344	chr11	99499833	99499834	rs668173	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q22.1		rs668173-?	NR	3E-8				NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q22.1	NR	rs2458167-C	0.685786703675344	2E-14		0.0075503765	[0.0056-0.0095] unit decrease	NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q22.1	NR	rs2458167-C	0.685786703675344	3E-14		0.009231672	[0.0068-0.0116] unit decrease	NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q22.1	NR	rs2458167-C	0.685786703675344	2E-14		0.012026263	[0.0089-0.0151] unit decrease	NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q22.1	NR	rs2458167-C	0.685786703675344	8E-14		0.009809904	[0.0072-0.0124] unit decrease	NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q22.1	NR	rs2458167-C	0.685786703675344	2E-14		0.0076817307	[0.0057-0.0097] unit decrease	NR [NR]	N
1344	chr11	99500747	99500748	rs2458167	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11q22.1	NR	rs2458167-A	0.303	2E-7		0.019402385	[0.012-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
1344	chr11	99507633	99507634	rs111369127	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q22.1		rs111369127-?	NR	3E-8				NR [NR]	N
1344	chr11	99516467	99516468	rs598046	30745170	Strawbridge RJ	2019-02-07	EBioMedicine	Identification of novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.	Suicidality	122,808 British ancestry individuals	NA	11q22.1	NR	rs598046-T	0.319	1E-8		0.053	[0.035-0.071] unit increase	Affymetrix [9481578] (imputed)	N
1344	chr11	99519603	99519604	rs680022	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q22.1	NR	rs680022-?		3E-9				NR [520857]	N
1344	chr11	99520507	99520508	rs586533	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	11q22.1	NR	rs586533-?		2E-9				NR [11140414]	N
1344	chr11	99520507	99520508	rs586533	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	11q22.1	NR	rs586533-T	NR	2E-9		6.029	z score decrease	Affymetrix [10847151] (imputed)	N
1344	chr11	99520507	99520508	rs586533	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	11q22.1	NR	rs586533-G	0.3221	2E-9		0.0137	[0.0092-0.0182] unit increase	Illumina [NR] (imputed)	N
1344	chr11	99571305	99571306	rs628246	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11q22.1	CNTN5	rs628246-T	0.171808	4E-8		5.49	z score increase	NR [10847151] (imputed)	N
1344	chr11	99585735	99585736	rs952700	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11q22.1	CNTN5	rs952700-?	NR	6E-6	(AFBV)			Affymetrix [70897]	N
1345	chr11	99661923	99661924	rs1119257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q22.1	Intergenic	rs1119257-A	0.3223	2E-9	(MTAG)	0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr11	99670513	99670514	rs1301838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q22.1		rs1301838-T	0.3227	1E-10		0.0096	[0.0067-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1345	chr11	99670513	99670514	rs1301838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q22.1	Intergenic	rs1301838-T	0.3227	4E-12	(MTAG)	0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1346	chr11	99782639	99782640	rs17134658	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	11q22.1	CNTN5	rs17134658-?		5E-6		5.5555553	[2.63-11.11]	Illumina [NR] (imputed)	N
1346	chr11	99818975	99818976	rs61475845	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	11q22.1	CNTN5	rs61475845-A	0.02	1E-6		2.2	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
1347	chr11	99936223	99936224	rs7112253	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	11q22.1	NR	rs7112253-A	NR	4E-6		1.1215792	[1.07-1.17]	Illumina [11600722] (imputed)	N
1347	chr11	99998430	99998431	rs67885470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q22.1		rs67885470-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1348	chr11	100043419	100043420	rs12803066	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q22.1	CNTN5	rs12803066-?	.518	4E-6			[NR]	Affymetrix, Illumina [152234]	N
1349	chr11	100139170	100139171	rs117557854	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	11q22.1	CNTN5	rs117557854-A	0.02	2E-6		2.0833335	[1.79-2.38]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1349	chr11	100141762	100141763	rs7927466	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	11q22.1	CNTN5	rs7927466-A	0.954	5E-9		1.85	[1.50-2.27]	Illumina [569200]	N
1349	chr11	100173536	100173537	rs11223581	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	11q22.1	CNTN5	rs11223581-G		9E-9	(AA)			Illumina [NR]	N
1349	chr11	100265279	100265280	rs73001149	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	11q22.1	NR	rs73001149-C		9E-6		0.5493	[0.31-0.79] SD units decrease	NR [10700000] (imputed)	N
1350	chr11	100344203	100344204	rs17095079	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.1	NR	rs17095079-?	NR	2E-15				Affymetrix [NR]	N
1350	chr11	100391860	100391861	rs1942108	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.1	Intergenic	rs1942108-A	0.491	5E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1350	chr11	100396614	100396615	rs141177865	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	11q22.1		rs141177865-?	NR	2E-9	(Colorectal polyp)	1.28	[1.15-1.41]	Illumina [NR] (imputed)	N
1350	chr11	100396614	100396615	rs141177865	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	11q22.1		rs141177865-?	NR	1E-9	(Colorectal cancer)	1.39	[1.2-1.61]	Illumina [NR] (imputed)	N
1351	chr11	100406639	100406640	rs12800752	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	11q22.1	ARHGAP42	rs12800752-T	0.80147	3E-6		0.0946	[0.055-0.134] year increase	Illumina [2310762] (imputed)	N
1351	chr11	100421330	100421331	rs1939309	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	11q22.1	CNTN5, ARHGAP42	rs1939309-C	NR	3E-6		4.681	NR z score increase	Illumina [7839440] (imputed)	N
1351	chr11	100421471	100421472	rs7952067	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	11q22.1	NR	rs7952067-C	0.0738	1E-6	(Trans/trans-18:2, EA)	0.0052	[0.003-0.0074] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1351	chr11	100430052	100430053	rs4754687	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	11q22.1	NR	rs4754687-A	NR	3E-8	(Recessive, Mixture cure model)	13.33	[5.34-33.28]	Illumina [810622]	N
1351	chr11	100433971	100433972	rs1502275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q22.1	NR	rs1502275-G	NR	4E-35		0.0577	[0.048-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1351	chr11	100439233	100439234	rs140989504	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	11q22.1		rs140989504-T	0.028748356	2E-8		1.3655896	[1.224448851-1.522999458]	Illumina [8919992] (imputed)	N
1351	chr11	100444989	100444990	rs11224291	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q22.1	NR	rs11224291-C	0.085094	2E-23		0.032867	[0.026-0.039] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1351	chr11	100446280	100446281	rs11224292	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs11224292-A	0.109971	2E-25				Affymetrix, Illumina [24588908] (imputed)	N
1351	chr11	100450266	100450268	rs56783829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q22.1		rs56783829-G	0.100441	2E-9		0.023149032	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11q22.1		rs72996108-A	NR	2E-12		0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q22.1		rs72996108-A	NR	7E-13		0.0213	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q22.1		rs72996108-A	NR	3E-23		0.0332	[0.027-0.04] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q22.1		rs72996108-A	NR	3E-49		0.0476	[0.041-0.054] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q22.1		rs72996108-A	0.097176	8E-11		0.024361882	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100452868	100452869	rs72996108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q22.1	NR	rs72996108-C	0.901851	7E-59		0.05125	[0.045-0.057] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q22.1	NR	rs72996113-T	0.097171	2E-41		0.051459692	[0.044-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q22.1	NR	rs72996113-T	0.0971649999999999	4E-42		0.05194276	[0.044-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q22.1		rs72996113-T	0.0972	5E-23		0.037785947	[0.03-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q22.1		rs72996113-T	0.097197	3E-24		0.03884998	[0.031-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs72996113-T	0.108864	9E-36				Affymetrix, Illumina [21126107] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q22.1	NR	rs72996113-T	0.097644	7E-36		0.042135	[0.036-0.049] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11q22.1	intergenic	rs72996113-T	0.0974	2E-17		0.05139524	[0.04-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr11	100453045	100453046	rs72996113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11q22.1	intergenic	rs72996113-T	0.0974	1E-17		0.05201959	[0.04-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr11	100456603	100456604	rs11224302	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11q22.1	ARHGAP42	rs11224302-T	0.1039	5E-14		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1351	chr11	100456603	100456604	rs11224302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs11224302-T	0.105847	2E-40				Affymetrix, Illumina [23472807] (imputed)	N
1351	chr11	100456603	100456604	rs11224302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q22.1	NR	rs11224302-T	0.098823	2E-33		0.0383	[0.032-0.045] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1351	chr11	100456603	100456604	rs11224302	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	11q22.1	CNTN5	rs11224302-C	0.869	5E-7		0.0146	[0.0089-0.0203] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1351	chr11	100457811	100457812	rs72996119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q22.1		rs72996119-G	0.09816	2E-44		0.05210784	[0.045-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100457811	100457812	rs72996119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q22.1		rs72996119-G	0.098176	1E-29		0.0425415	[0.035-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100457811	100457812	rs72996119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q22.1		rs72996119-?	NR	3E-45				NR [~ 8900000] (imputed)	N
1351	chr11	100460036	100460037	rs10894986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q22.1		rs10894986-A	0.097743	1E-20		0.035375427	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100463237	100463238	rs11224309	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	11q22.1	ARHGAP42	rs11224309-?	NR	2E-15		0.0927	NR L increase	Affymetrix [9390170] (imputed)	N
1351	chr11	100463237	100463238	rs11224309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q22.1		rs11224309-G	0.0979179999999999	9E-14		0.0285899	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100463237	100463238	rs11224309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs11224309-C	0.902626	1E-56				Affymetrix, Illumina [22063850] (imputed)	N
1351	chr11	100464252	100464253	rs12223916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q22.1		rs12223916-G	0.097953	4E-16		0.031701833	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100473188	100473189	rs11600132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs11600132-C	0.110532	2E-25				Affymetrix, Illumina [24246363] (imputed)	N
1351	chr11	100473327	100473328	rs11601576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q22.1		rs11601576-A	0.098851	3E-89		0.07492286	[0.068-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100475143	100475144	rs11224314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q22.1		rs11224314-A	0.100104	4E-20		0.0345833	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100475143	100475144	rs11224314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q22.1	NR	rs11224314-A	0.100711	1E-25		0.031639	[0.026-0.038] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1351	chr11	100477030	100477031	rs11530658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11q22.1		rs11530658-G	NR	2E-17		0.0263	[0.02-0.032] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1351	chr11	100486631	100486632	rs601727	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	11q22.1	intergenic	rs601727-C	0.411	2E-7		0.145	[NR] unit increase	Illumina [625127]	N
1351	chr11	100493994	100493995	rs717662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q22.1		rs717662-T	NR	6E-19		0.027	[0.021-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1351	chr11	100493994	100493995	rs717662	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	11q22.1	ARHGAP42	rs717662-?	NR	4E-9		1.5	NR unit decrease	NR [14100000] (imputed)	N
1351	chr11	100493994	100493995	rs717662	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	11q22.1	ARHGAP42	rs717662-?	NR	5E-8				NR [14100000] (imputed)	N
1351	chr11	100493994	100493995	rs717662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q22.1		rs717662-T	0.109076	1E-19		0.032831993	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1351	chr11	100493994	100493995	rs717662	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11q22.1	NR	rs717662-T	NR	2E-16		0.0500558	[0.037-0.063] unit decrease	Affymetrix [16832071] (imputed)	N
1351	chr11	100493994	100493995	rs717662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11q22.1	intergenic	rs717662-T	0.109	4E-12		0.03978493	[0.029-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1351	chr11	100498195	100498196	rs594476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q22.1		rs594476-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1351	chr11	100501570	100501571	rs1111890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q22.1		rs1111890-G	0.36813	4E-13		0.017463224	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100501570	100501571	rs1111890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q22.1		rs1111890-G	0.368168	2E-11		0.015741417	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100501570	100501571	rs1111890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q22.1		rs1111890-G	0.368183	6E-16		0.019114135	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100501570	100501571	rs1111890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q22.1	intergenic	rs1111890-G	0.3655	2E-13		0.02790585	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr11	100502330	100502331	rs7934276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q22.1		rs7934276-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1351	chr11	100507046	100507047	rs7939778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q22.1	intergenic	rs7939778-A	0.262	2E-10		0.02624332	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1351	chr11	100508896	100508897	rs7127313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q22.1		rs7127313-T	NR	8E-15		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1351	chr11	100508896	100508897	rs7127313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q22.1		rs7127313-T	NR	1E-10		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1351	chr11	100508896	100508897	rs7127313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q22.1	RN7SL222P	rs7127313-T	0.346112	2E-14		0.017812401	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100508896	100508897	rs7127313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs7127313-T	0.330652	5E-18				Affymetrix, Illumina [24649327] (imputed)	N
1351	chr11	100508896	100508897	rs7127313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q22.1	NR	rs7127313-T	0.345513	2E-17		0.016442	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1351	chr11	100519017	100519018	rs71476638	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q22.1	FLJ32810, TMEM133	rs71476638-A	0.053673691	7E-8		0.3665	[0.23-0.5] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1351	chr11	100520679	100520680	rs12363256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q22.1		rs12363256-A	0.327392	2E-12		0.016627965	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr11	100527038	100527039	rs11535739	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	11q22.1	NR	rs11535739-?	NR	8E-6		0.09322	[0.052-0.134] unit decrease	Affymetrix [9658292] (imputed)	N
1352	chr11	100533020	100533021	rs10895001	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11q22.1	NR	rs10895001-?	NR	5E-22		0.06575096	NR unit increase	Affymetrix [464137]	N
1352	chr11	100533363	100533363	rs35571646	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q22.1	intergenic	rs35571646-CCTAT	0.3199	2E-26		0.3742	[0.31-0.44] mmHg decrease	Affymetrix [NR] (imputed)	N
1352	chr11	100533363	100533363	rs35571646	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q22.1	intergenic	rs35571646-CCTAT	0.319	2E-11		0.1768	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1352	chr11	100544833	100544834	rs184201123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	11q22.1		rs184201123-T	0.029696005	7E-9		0.31488594	[0.21-0.42] unit increase	Illumina [13428297] (imputed)	N
1352	chr11	100544833	100544834	rs184201123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	11q22.1		rs184201123-T	NR	7E-9		0.3149	[0.21-0.42] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1352	chr11	100551885	100551886	rs79124516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q22.1	NR	rs79124516-T	NR	1E-10		0.0508	[0.035-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr11	100555113	100555114	rs4312035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q22.1	CTD-2383M3.1	rs4312035-G	0.288907	2E-18		0.021904122	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1352	chr11	100555113	100555114	rs4312035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q22.1	CTD-2383M3.1	rs4312035-G	0.288904	4E-19		0.022346167	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1352	chr11	100570059	100570060	rs61621482	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11q22.1	ARHGAP42	rs61621482-G	0.231189	8E-9		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1352	chr11	100570959	100570960	rs653320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q22.1		rs653320-T	NR	5E-17		0.0163	[0.013-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1352	chr11	100572409	100572410	rs670401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q22.1		rs670401-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1352	chr11	100572409	100572410	rs670401	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q22.1	ARHGAP42	rs670401-A	0.29	4E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100572409	100572410	rs670401	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q22.1	ARHGAP42	rs670401-A	0.29	9E-15	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100573119	100573120	rs1216743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11q22.1		rs1216743-A	NR	2E-8		0.0401	[0.026-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1352	chr11	100578674	100578675	rs6590810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q22.1		rs6590810-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	NR	rs6590811-T	0.4467	3E-15	(East Asian)	0.4971	[0.37-0.62] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590811-T	0.4467	2E-13	(Japanese)	0.3962	[0.29-0.5] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590811-T	0.4467	2E-9	(Japanese)	0.0831	[0.056-0.11] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590811-T	0.4467	8E-12	(Japanese)	0.3318	[0.24-0.43] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	11q22.1	ARHGAP42	rs6590811-?	NR	8E-12		0.02634	[0.019-0.034] unit increase	Illumina [6108953] (imputed)	N
1352	chr11	100578883	100578884	rs6590811	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	11q22.1	ARHGAP42	rs6590811-?	NR	5E-12		0.02677	[0.019-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1352	chr11	100579853	100579854	rs1847149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	11q22.1		rs1847149-T	0.449431	3E-11		0.022255	[0.016-0.029] unit increase	Illumina [13477770] (imputed)	N
1352	chr11	100581319	100581320	rs1234988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q22.1		rs1234988-A	NR	6E-47		0.0292	[0.025-0.033] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1352	chr11	100582227	100582228	rs6590812	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q22.1	NR	rs6590812-A	0.4519	1E-12	(East Asian)	0.0787	[0.057-0.1] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100582698	100582699	rs2298609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	11q22.1		rs2298609-G	0.449268	3E-11		0.0228412	[0.016-0.03] unit increase	Illumina [13477767] (imputed)	N
1352	chr11	100584149	100584150	rs1502284	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	NR	rs1502284-T	0.5478	2E-17	(East Asian)	0.39	[0.3-0.48] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100584149	100584150	rs1502284	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	NR	rs1502284-T	0.5479	2E-16	(East Asian)	0.3384	[0.26-0.42] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100584670	100584671	rs73003836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q22.1		rs73003836-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1352	chr11	100585806	100585807	rs2455569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11q22.1		rs2455569-C	NR	2E-13		0.0502	[0.037-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1352	chr11	100585806	100585807	rs2455569	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11q22.1	ARHGAP42	rs2455569-T	0.273535	4E-13		0.064772524	[0.047-0.082] unit decrease	Affymetrix [7288503] (imputed)	N
1352	chr11	100593537	100593538	rs633185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11q22.1		rs633185-C	NR	1E-24		0.0619	[0.05-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1352	chr11	100593537	100593538	rs633185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q22.1		rs633185-C	NR	3E-50		0.0304	[0.026-0.034] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1352	chr11	100593537	100593538	rs633185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q22.1	ARHGAP42	rs633185-C	0.71523	3E-12		0.017451987	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1352	chr11	100593537	100593538	rs633185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q22.1	ARHGAP42	rs633185-C	0.715207	5E-21		0.023687128	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1352	chr11	100593537	100593538	rs633185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q22.1	ARHGAP42	rs633185-C	0.715209	5E-22		0.024311177	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1352	chr11	100593537	100593538	rs633185	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11q22.1	ARHGAP42	rs633185-G	0.283039	6E-24		0.09064879	[0.073-0.108] unit decrease	Affymetrix [7288503] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	11q22.1	ARHGAP42	rs633185-?	NR	2E-47				Affymetrix [up to 7325140] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs633185-C	0.45	7E-12	(Japanese)	0.5141	[0.37-0.66] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs633185-C	0.4527	3E-13	(Japanese)	0.3876	[0.28-0.49] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs633185-C	0.4527	5E-10	(Japanese)	0.0803	[0.055-0.106] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs633185-C	0.4527	9E-12	(Japanese)	0.3267	[0.23-0.42] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	11q22.1	ARHGAP42	rs633185-C	0.285	9E-9				Affymetrix [28000000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	11q22.1	ARHGAP42	rs633185-C	0.71	2E-29	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100593537	100593538	rs633185	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11q22.1	ARHGAP42	rs633185-C	0.71	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100593537	100593538	rs633185	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q22.1	FLJ32810, TMEM133	rs633185-?	NR	2E-39				Affymetrix, Illumina [18800000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	11q22.1	FLJ32810, TMEM133	rs633185-?		1E-40				Affymetrix, Illumina [18800000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G	0.285	9E-6		0.0112	[0.0063-0.0161] unit decrease	Affymetrix [11535925] (imputed)	N
1352	chr11	100593537	100593538	rs633185	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.709	8E-11	(EA, initial)	0.516	[0.36-0.67] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1352	chr11	100593537	100593538	rs633185	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.709	2E-8	(EA, initial)	0.27	[0.18-0.36] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		9E-10	(EA)	0.404	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		5E-11		0.387	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		1E-31		0.488	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		7E-6		0.176	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		1E-15		0.223	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		7E-8	(EA)	0.23	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		2E-8		0.214	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs633185-G		1E-26		0.272	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100593537	100593538	rs633185	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.715	7E-15		0.522	[0.39-0.65] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1352	chr11	100593537	100593538	rs633185	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.715	2E-12		0.288	[0.21-0.37] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1352	chr11	100593537	100593538	rs633185	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.7167	8E-7	(EA)	0.8043	[0.48-1.12] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1352	chr11	100593537	100593538	rs633185	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	11q22.1	FLJ32810, TMEM133	rs633185-C	0.7173	2E-6	(EA)	0.4541	[0.27-0.64] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	TMEM133, FLJ32810	rs633185-G	0.28	1E-17		0.565	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	TMEM133, FLJ32810	rs633185-G	0.28	5E-11		0.07	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	11q22.1	TMEM133, FLJ32810	rs633185-G	0.28	2E-15		0.328	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1352	chr11	100593537	100593538	rs633185	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11q22.1	TMEM133, FLJ32810	rs633185-G	0.32	7E-10	(Mean Arterial Pressure)	0.325	[0.22-0.43] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	11q22.1		rs6590816-A	0.402185	9E-9		0.0203554	[0.013-0.027] unit increase	Illumina [13477770] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590816-A	0.4	2E-8	(Japanese)	0.427	[0.28-0.58] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590816-A	0.4023	1E-10	(Japanese)	0.3458	[0.24-0.45] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590816-A	0.4023	8E-7	(Japanese)	0.0684	[0.041-0.096] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs6590816-A	0.4023	3E-10	(Japanese)	0.3077	[0.21-0.4] unit increase	Illumina [6200000] (imputed)	N
1352	chr11	100601632	100601633	rs6590816	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	11q22.1	ARHGAP42	rs6590816-?	NR	1E-9		0.02354	[0.016-0.031] unit increase	Illumina [6108953] (imputed)	N
1352	chr11	100610545	100610546	rs604723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q22.1		rs604723-C	NR	4E-35		0.0652	[0.055-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1352	chr11	100610545	100610546	rs604723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q22.1		rs604723-C	NR	3E-42		0.0289	[0.025-0.033] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1352	chr11	100610545	100610546	rs604723	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q22.1	ARHGAP42	rs604723-T	0.2752	8E-15		0.0166	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1352	chr11	100610545	100610546	rs604723	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q22.1	ARHGAP42	rs604723-?	NR	8E-14		0.0392671	[0.029-0.05] unit increase	Illumina [4804024] (imputed)	N
1352	chr11	100610545	100610546	rs604723	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11q22.1	ARHGAP42	rs604723-T	0.273879	1E-10		0.06016691	[0.042-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1352	chr11	100610545	100610546	rs604723	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q22.1	ARHGAP42	rs604723-T	0.271336	2E-36		0.08634143	[0.073-0.1] unit decrease	Affymetrix [7288503] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q22.1		rs604723-?	NR	6E-81				NR [~ 8900000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q22.1		rs604723-?	NR	8E-40				NR [~ 8900000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs604723-T	0.55	7E-12	(Japanese)	0.5163	[0.37-0.66] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs604723-T	0.5467	2E-13	(Japanese)	0.3889	[0.28-0.49] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs604723-T	0.5467	8E-10	(Japanese)	0.0795	[0.054-0.105] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q22.1	ARHGAP42	rs604723-T	0.5467	9E-12	(Japanese)	0.3275	[0.23-0.42] unit decrease	Illumina [6200000] (imputed)	N
1352	chr11	100610545	100610546	rs604723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q22.1	ARHGAP42	rs604723-T	0.28	3E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100610545	100610546	rs604723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q22.1	ARHGAP42	rs604723-T	0.28	3E-31	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100610545	100610546	rs604723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	11q22.1	ARHGAP42	rs604723-T	0.28	3E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100610545	100610546	rs604723	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	11q22.1	ARHGAP42	rs604723-T	0.28	4E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1352	chr11	100610545	100610546	rs604723	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q22.1	ARHGAP42	rs604723-T	0.295	3E-9		0.04	[0.026-0.054] unit decrease	Affymetrix [7947838] (imputed)	N
1352	chr11	100610545	100610546	rs604723	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	11q22.1	FLJ32810, TMEM133	rs604723-T	0.4109	2E-12		0.4417	[0.32-0.56] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1352	chr11	100624598	100624599	rs7947761	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q22.1	ARHGAP42	rs7947761-A	0.7242	3E-9		0.042	[0.028-0.056] unit decrease	NR [8041861] (imputed)	N
1352	chr11	100631907	100631908	rs4754698	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11q22.1	ARHGAP42	rs4754698-C	0.5399	7E-11		0.0368	[0.026-0.048] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1352	chr11	100638254	100638255	rs667575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11q22.1	ARHGAP42	rs667575-A	0.7276	7E-14		0.03043729	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1352	chr11	100638254	100638255	rs667575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11q22.1	ARHGAP42	rs667575-A	0.7276	2E-15		0.03230792	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1352	chr11	100638254	100638255	rs667575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q22.1	ARHGAP42	rs667575-A	0.7276	2E-14		0.03103915	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1352	chr11	100638254	100638255	rs667575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q22.1	ARHGAP42	rs667575-A	0.7276	1E-15		0.03247966	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	NR	rs486023-G		1E-12		0.424	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	NR	rs486023-G		1E-10	(EA)	0.425	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	NR	rs486023-G		2E-30		0.48	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	NR	rs486023-G		4E-7		0.201	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	NR	rs486023-G		3E-16		0.229	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	NR	rs486023-G		7E-9	(EA)	0.249	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.1	NR	rs486023-G		5E-9		0.226	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100643136	100643137	rs486023	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.1	NR	rs486023-G		3E-23		0.254	unit increase	Affymetrix [at least 2696785] (imputed)	N
1352	chr11	100645462	100645462	rs140501712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q22.1	NR	rs140501712-I	0.251286	8E-13		0.016893	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1353	chr11	100692565	100692566	rs35473622	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	11q22.1	ARHGAP42	rs35473622-?	NR	6E-16		0.05736285	NR unit increase	Affymetrix [464137]	N
1353	chr11	100698231	100698232	rs11224476	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q22.1	NR	rs11224476-?	NR	3E-8				Illumina [7760689] (imputed)	N
1353	chr11	100709893	100709894	rs3758697	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	11q22.1	ARHGAP42, CNTN5, TMEM133	rs3758697-A	0.3	2E-6	(Japanese)	1.33	[1.18-1.50]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1353	chr11	100717135	100717136	rs55864876	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q22.1	YAP1	rs55864876-G	0.9184	3E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
1353	chr11	100720107	100720108	rs3858414	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	11q22.1		rs3858414-?	NR	4E-7		0.8215		NR [577656]	N
1353	chr11	100729153	100729154	rs77811714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	11q22.1	ARHGAP42	rs77811714-A	0.0455	7E-6		0.2808	[0.16-0.4] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1353	chr11	100748502	100748503	rs10895025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q22.1		rs10895025-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	8E-9	(404 ms)	0.0328266	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	5E-8	(406 ms)	0.0311634	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	4E-11	(-30 ms)	0.0378364	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	3E-11	(-32 ms)	0.0376683	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	3E-10	(-34 ms)	0.0357131	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	3E-10	(-28 ms)	0.0355104	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	2E-8	(-36 ms)	0.031727	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	1E-8	(408 ms)	0.0324972	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1354	chr11	100840491	100840492	rs671333	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q22.1	ARHGAP42	rs671333-G	0.555249	1E-8	(-26 ms)	0.0315301	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1354	chr11	100848014	100848015	rs7931273	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	11q22.1	ARHGAP42	rs7931273-T	0.3236	6E-7		0.5681	[0.34-0.79]	Illumina [281811]	N
1354	chr11	100859794	100859795	rs12788099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q22.1		rs12788099-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1354	chr11	100864145	100864146	rs17654410	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.1	NR	rs17654410-?	NR	4E-12				Affymetrix [NR]	N
1354	chr11	100874318	100874319	rs523332	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	11q22.1	NR	rs523332-G	NR	5E-6		1.1494253	[1.09-1.21]	Illumina [462430]	N
1354	chr11	100874696	100874697	rs667637	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q22.1		rs667637-G	0.2	2E-10		6.35	z score increase	Affymetrix [9061022] (imputed)	N
1354	chr11	100905055	100905056	rs11224561	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA			rs11224561-T	0.12	4E-8		0.09	unit increase	Illumina [2093892] (imputed)	N
1354	chr11	100907873	100907874	rs523535	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	11q22.1		rs523535-A	0.69	3E-8		0.08	unit increase	Illumina [2398641] (imputed)	N
1355	chr11	101044202	101044203	rs471811	30202859	Laisk T	2018-09-07	Hum Mol Genet	Large scale meta-analysis highlights the hypothalamic-pituitary-gonadal (HPG) axis in the genetic regulation of menstrual cycle length.	Length of menstrual cycle	44,871 European ancestry women	NA	11q22.1	PGR, PGR-AS1	rs471811-C	0.31	3E-8		0.03	[0.010-0.050] unit decrease	Illumina [9344826] (imputed)	N
1355	chr11	101055183	101055185	rs35863206	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q22.1	RP11-788M5.4	rs35863206-CAG	0.7779	3E-6		0.0384	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1356	chr11	101100767	101100768	rs61892344	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q22.1	PGR	rs61892344-T	0.1736	6E-9		0.1162	[0.077-0.155] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1356	chr11	101154871	101154872	rs7941595	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	11q22.1	LOC101054525, TRPC6	rs7941595-A	0.204962943	9E-6		1.1133189	[1.061679588-1.167469854]	Illumina [10439017] (imputed)	N
1357	chr11	101260797	101260798	rs2508362	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	11q22.1	PGR, TRPC6	rs2508362-G	0.199	2E-12		0.06	[0.043-0.076] unit increase	Illumina [11956931] (imputed)	N
1357	chr11	101272875	101272876	rs3016235	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.1	NR	rs3016235-?	NR	6E-10				Affymetrix [NR]	N
1358	chr11	101328690	101328691	rs143019032	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q22.1	NR	rs143019032-?	NR	2E-14		7.644	NR z score increase	Illumina [at least 830937] (imputed)	N
1358	chr11	101394764	101394765	rs12786942	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	11q22.1	Intergenic	rs12786942-T	0.1189	5E-8	(Upper facial depth)	1.429	[0.81-2.05] unit decrease	Illumina [34985077] (imputed)	N
1358	chr11	101394764	101394765	rs12786942	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	11q22.1	Intergenic	rs12786942-T	0.1189	1E-7	(Middle facial depth)	1.512	[0.87-2.15] unit decrease	Illumina [34985077] (imputed)	N
1358	chr11	101409137	101409138	rs11224824	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	11q22.1	Intergenic	rs11224824-?		3E-6		1.367	[NR]	Affymetrix [492217] (imputed)	N
1358	chr11	101409137	101409138	rs11224824	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	11q22.1	Intergenic	rs11224824-?		3E-6		1.436	[NR]	Affymetrix [492217] (imputed)	N
1358	chr11	101436720	101436721	rs10895140	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11q22.1	TRPC6, PGR	rs10895140-G	0.66	7E-14		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1358	chr11	101436740	101436741	rs10895141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q22.1		rs10895141-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1359	chr11	101453507	101453508	rs77679196	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	11q22.1	TRPC6	rs77679196-?	NR	8E-6		7.0	[3.96-10.05] unit decrease	Affymetrix [618793]	N
1359	chr11	101467820	101467821	rs59739823	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q22.1	TRPC6	rs59739823-T	0.144	9E-9		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1359	chr11	101479582	101479583	rs11224896	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	11q22.1	TRPC6, ANGPTL5	rs11224896-T		4E-13		0.0099	[0.0072-0.0126] unit increase	Affymetrix [13304133] (imputed)	N
1359	chr11	101507637	101507638	rs7126770	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q22.1		rs7126770-?	NR	1E-6		0.94952077	[0.929929621844685-0.969524669355384]	Illumina [up to 7827597] (imputed)	N
1359	chr11	101520885	101520886	rs1939455	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q22.1	NR	rs1939455-G	NR	2E-7		1.05	unit increase	Affymetrix [14661600] (imputed)	N
1359	chr11	101551369	101551370	rs552665819	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TRPC6	rs552665819-?	NR	4E-9		3.18882	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1359	chr11	101565601	101565602	rs60222254	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	11q22.1	TRPC6	rs60222254-C	0.415	3E-6		0.08	unit decrease	Illumina [5510858] (imputed)	N
1359	chr11	101576935	101576936	rs76906076	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q22.1		rs76906076-?	NR	3E-6		1.1000786	[1.05667064787739-1.14526975685122]	Illumina [up to 7827597] (imputed)	N
1360	chr11	101656396	101656397	rs2186607	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q22.1	NR	rs2186607-T	0.5071	1E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1360	chr11	101676820	101676821	rs17684670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q22.1		rs17684670-A	NR	3E-9		0.028	[0.019-0.037] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1360	chr11	101676820	101676821	rs17684670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q22.1	TRPC6	rs17684670-A	0.0649070000000001	5E-14		0.03414774	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr11	101680286	101680287	rs78677343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q22.1	TRPC6	rs78677343-G	0.065012	3E-9		0.026790954	[0.018-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr11	101680286	101680287	rs78677343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.1	NR	rs78677343-G	0.062115	3E-11				Affymetrix, Illumina [24649327] (imputed)	N
1360	chr11	101680286	101680287	rs78677343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q22.1	NR	rs78677343-G	0.064168	1E-12		0.0268	[0.019-0.034] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1360	chr11	101695748	101695749	rs11225024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q22.1	TRPC6	rs11225024-T	0.084116	1E-10		0.026292298	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr11	101695748	101695749	rs11225024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q22.1	NR	rs11225024-T	0.08444	2E-11		0.022207	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1361	chr11	101742256	101742257	rs12363310	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	11q22.1	KIAA1377, ANGPTL5	rs12363310-?		4E-6	(AA)			Illumina [~ 2500000] (imputed)	N
1361	chr11	101771432	101771433	rs11225055	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	11q22.1	ANGPTL5, KIAA1377	rs11225055-C	NR	1E-6	(LJC)	3.49	[2.08-4.90] unit decrease	Illumina [586062]	N
1362	chr11	101876342	101876343	rs142535958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.1	Intergenic	rs142535958-A	0.999	2E-6	(AA)	0.43	unit increase	Illumina [NR] (imputed)	N
1362	chr11	101891969	101891970	rs1616065	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11q22.1	C11orf70	rs1616065-C	0.4596	2E-8		0.0108643565	[0.007-0.0147] unit increase	Illumina [9339358] (imputed)	N
1362	chr11	101944493	101944494	rs188240612	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.1	C11orf70	rs188240612-A	0.999	9E-7	(AA)	0.487	unit increase	Illumina [NR] (imputed)	N
1363	chr11	101979371	101979372	rs7931899	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q22.1	YAP1	rs7931899-C	0.542013	1E-9		0.0111856	[0.0076-0.0148] unit decrease	NR [13737936] (imputed)	N
1363	chr11	101979371	101979372	rs7931899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q22.1		rs7931899-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1363	chr11	101979371	101979372	rs7931899	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q22.1		rs7931899-?	NR	3E-10		0.0130362	[0.009-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
1363	chr11	101999973	101999974	rs7108820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q22.1		rs7108820-C	NR	2E-10		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1363	chr11	102009279	102009280	rs11225148	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	11q22.1	YAP1	rs11225148-G	0.06	2E-6	(Single Height)	0.1	[0.051-0.149] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1363	chr11	102043239	102043240	rs11225154	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	11q22.1	YAP1	rs11225154-A	0.09	5E-11		0.1787	[0.13-0.23] unit increase	Illumina [> 10000000] (imputed)	N
1363	chr11	102043239	102043240	rs11225154	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	11q22.1	YAP1	rs11225154-A	0.09	8E-11		1.22	[1.15-1.29]	Illumina [~ 9000000] (imputed)	N
1363	chr11	102052005	102052006	rs28438856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q22.1	YAP1	rs28438856-T	0.072076	4E-10		0.027181381	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1363	chr11	102053121	102053122	rs17097471	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		YAP1	rs17097471-?	NR	3E-8	(male)	1.85448	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1363	chr11	102057067	102057068	rs12787996	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q22.1	NR	rs12787996-C	0.661075	2E-12		0.00862088	[0.0061-0.0112] unit increase	Affymetrix [16585854] (imputed)	N
1363	chr11	102057067	102057068	rs12787996	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q22.1	NR	rs12787996-C	0.661075	5E-7		0.00737874	[0.0044-0.0103] unit increase	Affymetrix [16585866] (imputed)	N
1363	chr11	102057067	102057068	rs12787996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q22.1		rs12787996-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1363	chr11	102070638	102070639	rs1894116	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	11q22.1	YAP1	rs1894116-G	0.194	1E-22		1.27	[NR]	Affymetrix [NR] (imputed)	N
1363	chr11	102077199	102077200	rs12807220	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q22.1	YAP1	rs12807220-A	0.3475	6E-15		0.1585	[0.12-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
1363	chr11	102077199	102077200	rs12807220	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q22.1	YAP1	rs12807220-A	0.3571	3E-17		0.1537	[0.12-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1363	chr11	102079712	102079713	rs117496742	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	11q22.1	YAP1	rs117496742-?	NR	6E-7		6.1	[0.85-44.48]	Illumina [34985077] (imputed)	N
1363	chr11	102079712	102079713	rs117496742	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	11q22.1	YAP1	rs117496742-?	NR	2E-7	(EA)	7.0	[0.92-52.94]	Illumina [34985077] (imputed)	N
1363	chr11	102079712	102079713	rs117496742	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	11q22.1	YAP1	rs117496742-?	NR	3E-8	(EA)	11.2	[1.04,121.8]	Illumina [34985077] (imputed)	N
1363	chr11	102079712	102079713	rs117496742	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	11q22.1	YAP1	rs117496742-?	NR	2E-7		9.2	[0.91-92.28]	Illumina [34985077] (imputed)	N
1363	chr11	102083607	102083608	rs10895275	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	11q22.1	YAP1	rs10895275-A	0.33	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1363	chr11	102083694	102083695	rs10895276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q22.1	NR	rs10895276-C	0.65837	4E-25		0.00876384	[0.007-0.0105] unit increase	Affymetrix [16582909] (imputed)	N
1363	chr11	102083694	102083695	rs10895276	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q22.1	NR	rs10895276-C	0.65837	5E-18		0.00836565	[0.0064-0.0103] unit increase	Affymetrix [16582965] (imputed)	N
1363	chr11	102084939	102084940	rs10895277	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q22.1	NR	rs10895277-A	0.659223	1E-17		0.00987439	[0.0075-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
1363	chr11	102084939	102084940	rs10895277	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q22.1	NR	rs10895277-A	0.659223	9E-15		0.00961547	[0.0071-0.0122] unit increase	Affymetrix [16582614] (imputed)	N
1363	chr11	102095334	102095335	rs10895278	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	11q22.1	YAP1	rs10895278-C	0.34024699999999997	7E-13		0.023117	[0.017-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1363	chr11	102097314	102097315	rs2282652	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11q22.1	NR	rs2282652-?	NR	2E-17				NR [up to 7000000]	N
1363	chr11	102103599	102103600	rs8504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q22.1		rs8504-A	NR	5E-11		0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1364	chr11	102105722	102105723	rs12223991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q22.1		rs12223991-T	NR	6E-12		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1364	chr11	102107744	102107745	rs7950422	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q22.1	YAP1	rs7950422-G	0.679025	1E-11		0.001754	[0.0012-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1364	chr11	102108421	102108422	rs10895280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q22.1	NR	rs10895280-A	NR	6E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1364	chr11	102111440	102111441	rs117751356	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11q22.1	NR	rs117751356-?	NR	4E-6		0.1583	[0.092-0.225] unit increase	Illumina [~ 7800000] (imputed)	N
1364	chr11	102155473	102155474	rs2852894	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume (Alzheimer's disease interaction)	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	11q22.1	YAP1, BIRC3	rs2852894-?	NR	1E-6		0.016	[NR] unit decrease	Illumina [478011]	N
1364	chr11	102155904	102155905	rs35249300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q22.1	NR	rs35249300-G	NR	8E-10		0.0405	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1364	chr11	102157899	102157900	rs4754839	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q22.1	NR	rs4754839-A	0.562324	1E-8		0.0179961	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1364	chr11	102190947	102190948	rs186356272	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs186356272-T	0.98	2E-15		0.4427	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1365	chr11	102260287	102260288	rs117304134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q22.2	NR	rs117304134-T	NR	2E-11		0.0731	[0.052-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1365	chr11	102260287	102260288	rs117304134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q22.2	NR	rs117304134-T	NR	1E-18		0.0962	[0.075-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
1365	chr11	102280750	102280751	rs11225247	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	11q22.2	TMEM123	rs11225247-C	0.08	8E-6				Illumina [905781]	N
1365	chr11	102314267	102314268	rs118115443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q22.2		rs118115443-T	NR	1E-11		0.0755	[0.054-0.097] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1366	chr11	102373966	102373967	rs7131148	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	11q22.2	intergenic	rs7131148-A	NR	2E-6		0.428939	[0.25-0.6] unit decrease	Illumina [5842835] (imputed)	N
1366	chr11	102381323	102381324	rs578627	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	11q22.2		rs578627-G	0.4653	1E-5		1.226	[1.12-1.341]	Affymetrix [7975321] (imputed)	N
1366	chr11	102382975	102382976	rs11225292	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	11q22.2		rs11225292-C	NR	1E-5		0.3071	unit increase	Illumina [8524982] (imputed)	N
1366	chr11	102390342	102390343	rs17882041	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	11q22.2	NR	rs17882041-?	NR	1E-6		0.6593	[0.5568-0.7807]	Affymetrix [237955] (imputed)	N
1366	chr11	102396606	102396607	rs12285347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	11q22.2		rs12285347-C	NR	1E-8		0.0775	[0.051-0.104] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1366	chr11	102396606	102396607	rs12285347	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	11q22.2	MMP7	rs12285347-C	0.46	8E-12		0.038463	[0.027-0.049] unit increase	Affymetrix [10109774] (imputed)	N
1366	chr11	102397004	102397005	rs56857975	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MMP 7 plasma levels	400 French ancestry individuals	NA	11q22.2		rs56857975-C	NR	7E-6		0.207	[0.12-0.29] ng/mL increase	Illumina [5201092] (imputed)	N
1366	chr11	102398433	102398434	rs17884405	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs17884405-T	0.22	6E-28		0.1398	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1366	chr11	102401632	102401633	rs11568819	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,367 Icelandic ancestry individuals	NA	11q22.2		rs11568819-A	0.06498	6E-42		0.497754	[0.43-0.57] unit increase	Illumina [7506463] (imputed)	N
1366	chr11	102401632	102401633	rs11568819	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs11568819-A	0.062	2E-222		0.5757	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1366	chr11	102401632	102401633	rs11568819	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP7	rs11568819-G	0.94515625	5E-21	(MMP7, 2789_26_2)	0.5017827	[0.4-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1366	chr11	102401632	102401633	rs11568819	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs11568819-?	NR	4E-12	(MMP-7)	0.618816	[0.44-0.79] unit increase	Illumina [11901634] (imputed)	N
1366	chr11	102401632	102401633	rs11568819	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q22.2	MMP7	rs11568819-A	0.06690141	6E-14	(EA, Matrilysin)	0.6681	[0.5-0.84] unit increase	Affymetrix [509946]	N
1366	chr11	102401660	102401661	rs11568818	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q22.2	NR	rs11568818-T	NR	4E-26		1.076	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1366	chr11	102401660	102401661	rs11568818	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	11q22.2	NR	rs11568818-A	NR	6E-6		1.07	NR	Affymetrix [at least 232408] (imputed)	N
1366	chr11	102401660	102401661	rs11568818	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q22.2	NR	rs11568818-T	0.55	2E-19		1.08	[1.06-1.09]	Illumina [20370935] (imputed)	N
1366	chr11	102401660	102401661	rs11568818	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs11568818-?	NR	4E-12	(MMP-7)	0.417727	[0.3-0.54] unit decrease	Illumina [11901634] (imputed)	N
1366	chr11	102401660	102401661	rs11568818	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	11q22.2	MMP8, BIRC2, MMP10, MMP20, MMP27, MMP7, YAP1, BIRC3, TMEM123	rs11568818-A	0.56	2E-11		1.1	[1.06-1.14]	Illumina [~ 2600000] (imputed)	N
1366	chr11	102415000	102415001	rs7946641	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs7946641-A	0.43	1E-44		0.1306	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1366	chr11	102446373	102446374	rs11607749	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs11607749-T	0.29	1E-13		0.0714	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1366	chr11	102462325	102462326	rs61893841	30067105	Chang LC	2018-08-01	Expert Opin Drug Saf	Thyrotropin receptor antibodies and a genetic hint in antithyroid drug-induced adverse drug reactions.	Adverse response to antithyroid drugs in Graves disease	24 East Asian ancestry cases, 423 East Asian ancestry controls	45 East Asian ancestry cases, 137 East Asian ancestry controls	11q22.2	MMP20	rs61893841-?		9E-7		3.659	[2.129-6.288]	Affymetrix [574162]	N
1366	chr11	102470255	102470256	rs10895322	28924153	Chang X	2017-09-18	Nat Commun	Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk.	Neuroblastoma (11q deletion)	113 European ancestry cases, 5,109 European ancestry controls	44 European ancestry cases, 1,902 European ancestry controls	11q22.2	MMP20	rs10895322-G	0.057	3E-10		2.763	[2.015-3.789]	Illumina [NR]	N
1366	chr11	102480389	102480390	rs17098961	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	11q22.2	MMP20, RP11-817J15.2, MMP7, MMP27	rs17098961-A	NR	7E-7	(sleep offset)	0.7711	[0.47-1.08] unit increase	Affymetrix [7141204] (imputed)	N
1366	chr11	102488072	102488073	rs1317947	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	11q22.2	MMP20	rs1317947-A	NR	5E-8	(Alanine)	0.232435	[0.15-0.32] unit increase	Illumina [up to 9281895] (imputed)	N
1366	chr11	102489188	102489189	rs1784414	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	11q22.2		rs1784414-?	NR	3E-8		0.5013	[0.32-0.68] unit decrease	Affymetrix [NR] (imputed)	N
1366	chr11	102491248	102491248	rs11383572	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs11383572-G	0.24	7E-18		0.1159	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1367	chr11	102500832	102500833	rs2846344	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	11q22.2		rs2846344-?	NR	3E-9		0.5446	[0.37-0.72] unit decrease	Affymetrix [NR] (imputed)	N
1367	chr11	102501664	102501665	rs948138	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in patient global heath assessment score)	549 European ancestry individuals treated with adalimumab, 615 European ancestry individuals treated with etanercept, 426 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	11q22.2	MMP20, MMP27	rs948138-?		8E-8	(Etanercept)	0.25	[-0.24-0.74] unit increase	Affymetrix, Illumina [9814288] (imputed)	N
1367	chr11	102502902	102502903	rs183501923	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	11q22.2	RP11-817J15.2	rs183501923-G	NR	2E-6		0.02864	[0.017-0.04] unit increase	Illumina [NR] (imputed)	N
1367	chr11	102507414	102507415	rs2260433	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	11q22.2	intergenic	rs2260433-?	NR	9E-6	(EA)	1.74	[1.39-2.17]	Illumina [6090031] (imputed)	N
1367	chr11	102509699	102509700	rs139780693	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	11q22.2	AP000851.1	rs139780693-?	NR	4E-7				Illumina [10215072] (imputed)	N
1367	chr11	102509699	102509700	rs139780693	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	11q22.2	AP000851.1	rs139780693-?	NR	2E-7	(AA)			Illumina [10215072] (imputed)	N
1367	chr11	102514860	102514861	rs4433535	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q22.2	NR	rs4433535-?		7E-7	(MMP3)	0.237	[NR] unit decrease	Illumina [NR]	N
1367	chr11	102515187	102515188	rs61083075	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.2	NR	rs61083075-T	0.01045	2E-9	(ANP32A)	0.1331	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr11	102526609	102526610	rs2846714	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP8	rs2846714-T	0.76765625	2E-14	(MMP8, 9172_69_3)	0.22864127	[0.17-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1367	chr11	102556320	102556321	rs1291326	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs1291326-T	0.92	2E-38		0.1732	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1367	chr11	102571813	102571814	rs2846701	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP8	5,368 Icelandic ancestry individuals	NA	11q22.2		rs2846701-G	0.4644	6E-15		0.15045	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1367	chr11	102584134	102584135	rs35231465	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP8	5,368 Icelandic ancestry individuals	NA	11q22.2		rs35231465-A	0.02237	6E-48		0.930858	[0.81-1.06] unit decrease	Illumina [7506463] (imputed)	N
1367	chr11	102595134	102595135	rs1939012	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	11q22.2	MMP8	rs1939012-T	0.4	2E-8	(GGE)	1.12	[1.07-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1367	chr11	102608998	102608999	rs55930209	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs55930209-A	0.038	4E-18		0.2496	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1367	chr11	102628051	102628052	rs7924357	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		11q22.2	MMP10	rs7924357-?		1E-6	(Cluxel size)			Illumina [208975]	N
1368	chr11	102642260	102642261	rs12290253	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs12290253-T	0.81	1E-48		0.1925	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102642509	102642510	rs12807063	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP10	rs12807063-A	0.8490625	4E-21	(MMP10, 10479_18_3)	0.32995683	[0.26-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
1368	chr11	102648056	102648057	rs17860967	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP10	rs17860967-T	0.84765625	3E-15	(MMP10, 3743_1_2)	0.28177822	[0.21-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1368	chr11	102649481	102649482	rs17860955	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,368 Icelandic ancestry individuals	NA	11q22.2		rs17860955-C	0.01202	2E-38		1.1157	[0.95-1.28] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102649481	102649482	rs17860955	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,360 Icelandic ancestry individuals	NA	11q22.2		rs17860955-C	0.01202	5E-12		0.579919	[0.42-0.74] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102649481	102649482	rs17860955	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs17860955-T	0.98	5E-155		1.0464	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102649481	102649482	rs17860955	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.2	MMP10	rs17860955-C	0.022	1E-23	(Stromelysin-2, MMP10.8479.4.3)	0.87	[0.69-1.05] unit decrease	Affymetrix [10572788] (imputed)	N
1368	chr11	102649481	102649482	rs17860955	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs17860955-?	NR	5E-10	(MMP-10)	1.03223	[0.71-1.36] unit decrease	Illumina [11901634] (imputed)	N
1368	chr11	102649855	102649856	rs470263	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	11q22.2		rs470263-T	NR	1E-6		0.01	[0.0061-0.0139] unit decrease	NR [7831927]	N
1368	chr11	102650423	102650424	rs486055	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MMP 10 plasma levels	400 French ancestry individuals	NA	11q22.2		rs486055-C	NR	1E-7		0.238	[0.15-0.33] ng/mL decrease	Illumina [5201092] (imputed)	N
1368	chr11	102650423	102650424	rs486055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,368 Icelandic ancestry individuals	NA	11q22.2		rs486055-T	0.1542	3E-67		0.444818	[0.39-0.5] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102650423	102650424	rs486055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,360 Icelandic ancestry individuals	NA	11q22.2		rs486055-T	0.1542	8E-22		0.242961	[0.19-0.29] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102650423	102650424	rs486055	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs486055-T	0.16	9E-142		0.3352	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102650423	102650424	rs486055	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Matrix metalloproteinase-10 levels	982 Scottish ancestry individuals		11q22.2	NR	rs486055-T	0.17286	2E-11		0.41198	[0.29-0.53] unit decrease	Illumina [7903493] (imputed)	N
1368	chr11	102650423	102650424	rs486055	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.2	NR	rs486055-T	0.167	1E-21	(Stromelysin-2, MMP10.8479.4.3)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1368	chr11	102650423	102650424	rs486055	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs486055-?	NR	9E-10	(MMP-10)	0.442365	[0.3-0.58] unit decrease	Illumina [11901634] (imputed)	N
1368	chr11	102660406	102660407	rs17293823	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,365 Icelandic ancestry individuals	NA	11q22.2		rs17293823-A	0.1475	1E-40		0.349418	[0.3-0.4] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102666654	102666655	rs17878931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP10	rs17878931-G	0.84671875	1E-42	(MMP10, 8479_4_3)	0.47632527	[0.41-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
1368	chr11	102666961	102666962	rs17885595	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,368 Icelandic ancestry individuals	NA	11q22.2		rs17885595-A	0.1454	5E-71		0.470842	[0.42-0.52] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102668881	102668882	rs3213460	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP10	5,360 Icelandic ancestry individuals	NA	11q22.2		rs3213460-A	0.1475	4E-27		0.278779	[0.23-0.33] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102671696	102671697	rs534191	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs534191-T	0.4532	2E-229		0.565426	[0.53-0.6] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102671696	102671697	rs534191	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Matrix metalloproteinase levels	982 Scottish ancestry individuals		11q22.2	NR	rs534191-T	0.43553	6E-16		0.38892	[0.29-0.48] unit increase	Illumina [7903493] (imputed)	N
1368	chr11	102673247	102673248	rs484915	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q22.2	MMP1, WTAPP1, AP000619.6	rs484915-T	0.4471831	2E-30	(Interstitial collagenase)	0.5028	[0.42-0.59] unit increase	Affymetrix [509946]	N
1368	chr11	102677128	102677129	rs145541733	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs145541733-T	0.99	3E-17		0.3596	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102680836	102680837	rs529381	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs529381-T	0.2684	5E-159		0.540908	[0.5-0.58] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102680948	102680949	rs470530	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs470530-A	0.115	2E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102680948	102680949	rs470530	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs470530-A	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102681805	102681806	rs470234	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs470234-T	0.115	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102681805	102681806	rs470234	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs470234-T	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102685379	102685380	rs470928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs470928-A	0.884	1E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102685379	102685380	rs470928	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs470928-A	0.886	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102685394	102685395	rs470292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs470292-A	0.884	1E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102685394	102685395	rs470292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs470292-A	0.886	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102685649	102685650	rs146414450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP12	5,367 Icelandic ancestry individuals	NA	11q22.2		rs146414450-A	0.04553	1E-23		0.430421	[0.35-0.51] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102685909	102685910	rs505987	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs505987-A	0.116	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102685909	102685910	rs505987	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs505987-A	0.115	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102687699	102687700	rs475937	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs475937-A	0.1022	1E-6		0.153198	[0.091-0.215] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102687699	102687700	rs475937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs475937-A	0.115	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102687699	102687700	rs475937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs475937-A	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102690130	102690131	rs520146	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs520146-T	0.115	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102690130	102690131	rs520146	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs520146-T	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102691418	102691419	rs564018	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA		LOC100288077	rs564018-A	0.116	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102691418	102691419	rs564018	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		LOC100288077	rs564018-A	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102691481	102691482	rs11225434	20031604	Cheng YC	2009-08-01	Circ Cardiovasc Genet	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA		MMP-1	rs11225434-C	0.38	9E-29		0.39	[NR] unit increase	Affymetrix [338079]	N
1368	chr11	102692094	102692095	rs688258	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs688258-A	0.116	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102692094	102692095	rs688258	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs688258-A	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102693108	102693109	rs595128	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs595128-T	0.116	9E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102693108	102693109	rs595128	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs595128-T	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102693185	102693186	rs499459	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA		LOC100288077	rs499459-A	0.116	9E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102693185	102693186	rs499459	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		LOC100288077	rs499459-A	0.114	4E-7		0.015	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102694467	102694468	rs611705	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs611705-T	0.884	9E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102694467	102694468	rs611705	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs611705-T	0.886	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102695107	102695108	rs495366	20031604	Cheng YC	2009-08-01	Circ Cardiovasc Genet	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA		MMP	rs495366-A	0.36	6E-34		0.44	[NR] unit decrease	Affymetrix [338079]	N
1368	chr11	102697120	102697121	rs7126392	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MMP 3 plasma levels	400 French ancestry individuals	NA	11q22.2		rs7126392-A	NR	3E-13		0.165	[0.12-0.21] ng/mL increase	Illumina [5201092] (imputed)	N
1368	chr11	102697730	102697731	rs471994	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MMP 1 plasma levels	400 French ancestry individuals	NA	11q22.2		rs471994-G	NR	1E-20		0.416	[0.34-0.5] ng/mL decrease	Illumina [5201092] (imputed)	N
1368	chr11	102697730	102697731	rs471994	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs471994-A	0.37	1E-312		0.3709	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102697730	102697731	rs471994	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP1	rs471994-G	0.661875	7E-107	(MMP1, 4924_32_1)	0.5530866	[0.51-0.6] unit increase	Illumina [> 1000000] (imputed)	N
1368	chr11	102697730	102697731	rs471994	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs471994-?	NR	2E-15	(MMP-1)	0.412738	[0.31-0.51] unit decrease	Illumina [11901634] (imputed)	N
1368	chr11	102697730	102697731	rs471994	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q22.2	MMP1	rs471994-G	0.65	2E-82		0.32	unit increase	Illumina [5270624] (imputed)	N
1368	chr11	102699459	102699460	rs7946057	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q22.2	MMP3	rs7946057-A	0.53	5E-160		0.53	unit increase	Illumina [5270624] (imputed)	N
1368	chr11	102700359	102700360	rs473238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs473238-T	0.116	7E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102700359	102700360	rs473238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs473238-T	0.115	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102700844	102700845	rs146825996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs146825996-A	0.01653	5E-32		0.863913	[0.72-1.01] unit increase	Illumina [7506463] (imputed)	N
1368	chr11	102701375	102701376	rs553542	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs553542-T	0.884	7E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102701375	102701376	rs553542	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs553542-T	0.885	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102702145	102702146	rs525119	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs525119-T	0.884	7E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102702145	102702146	rs525119	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs525119-T	0.885	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102703277	102703278	rs646760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs646760-A	0.884	7E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102703277	102703278	rs646760	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs646760-A	0.885	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102704475	102704476	rs593698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs593698-A	0.116	7E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102704475	102704476	rs593698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs593698-A	0.115	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102705746	102705747	rs605949	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs605949-T	0.116	7E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102705746	102705747	rs605949	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs605949-T	0.115	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102707304	102707305	rs569444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs569444-A	0.116	7E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102707304	102707305	rs569444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs569444-A	0.115	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102707365	102707366	rs563096	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	LOC100288077	rs563096-A	0.884	7E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102707365	102707366	rs563096	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	LOC100288077	rs563096-A	0.885	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102707913	102707914	rs575027	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP3	rs575027-G	0.4390625	2E-33	(MMP3, 2788_55_1)	0.2599884	[0.22-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1368	chr11	102708506	102708507	rs655403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP3	rs655403-T	0.117	6E-7		0.019	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102708506	102708507	rs655403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP3	rs655403-T	0.115	3E-7		0.015	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102709424	102709425	rs520540	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP3	5,365 Icelandic ancestry individuals	NA	11q22.2		rs520540-G	0.4374	2E-54		0.260931	[0.23-0.29] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102709521	102709522	rs646910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP3	rs646910-A	0.117	6E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102709521	102709522	rs646910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP3	rs646910-A	0.114	3E-7		0.015	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102710470	102710471	rs566125	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	11q22.2		rs566125-T	0.86	3E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1368	chr11	102710470	102710471	rs566125	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	11q22.2	MMP3	rs566125-T	0.1269	4E-9		1.08	[1.05-1.11]	Affymetrix [at least 20323458] (imputed)	N
1368	chr11	102710470	102710471	rs566125	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP3	rs566125-T	0.521	1E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102710470	102710471	rs566125	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP3	rs566125-T	0.366	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102710706	102710707	rs476762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP3	rs476762-A	0.116	7E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102710706	102710707	rs476762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP3	rs476762-A	0.114	2E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102711580	102711581	rs680753	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP3	rs680753-C	0.884	7E-7		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102711580	102711581	rs680753	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP3	rs680753-C	0.886	2E-7		0.016	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102715680	102715681	rs632478	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs632478-T	0.49	7E-822		0.4465	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102715825	102715826	rs494963	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs494963-A	0.116	6E-7		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102715825	102715826	rs494963	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs494963-A	0.114	8E-8		0.016	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102716320	102716321	rs645419	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q22.2	NR	rs645419-?		1E-46	(MMP3)	0.4612	[NR] unit increase	Illumina [NR]	N
1368	chr11	102716979	102716980	rs573521	25340798	Kauwe JS	2014-10-23	PLoS Genet	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	Cerebrospinal fluid levels of Alzheimer's disease-related proteins	574 individuals	NA	11q22.2	MMP3, MMP12, WTAPP1, MMP13, DCUN1D5	rs573521-A	NR	2E-44	(Matrix metalloproteinase-3)			Illumina [5815690] (imputed)	N
1368	chr11	102717640	102717641	rs116187470	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs116187470-A	0.115	2E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102717640	102717641	rs116187470	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs116187470-A	0.115	2E-8		0.018	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102718694	102718695	rs662558	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs662558-T	0.776	1E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102718694	102718695	rs662558	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs662558-T	0.778	2E-6		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102719533	102719534	rs114176245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs114176245-T	0.11	3E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102719533	102719534	rs114176245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs114176245-T	0.114	7E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102719533	102719534	rs114176245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs114176245-T	0.114	1E-6		0.072	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720343	102720344	rs17361668	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs17361668-A	0.108	3E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720343	102720344	rs17361668	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17361668-A	0.112	4E-10		0.02	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720343	102720344	rs17361668	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17361668-A	0.113	1E-6		0.074	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720677	102720678	rs615098	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs615098-T	0.769	6E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720677	102720678	rs615098	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs615098-T	0.772	2E-6		0.049	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720944	102720945	rs626750	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs626750-A	0.2	1E-9		0.014	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720944	102720945	rs626750	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs626750-A	0.198	6E-8		0.06	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102720944	102720945	rs626750	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q22.2	MMP12	rs626750-G	NR	7E-7	(Perc15, Cases)			Illumina [7600000] (imputed)	N
1368	chr11	102720944	102720945	rs626750	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q22.2	MMP12	rs626750-G	NR	6E-6	(Perc15, All)			Illumina [7600000] (imputed)	N
1368	chr11	102720944	102720945	rs626750	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q22.2	MMP12	rs626750-G	NR	4E-7	(%LAA-950, Cases)			Illumina [7600000] (imputed)	N
1368	chr11	102720944	102720945	rs626750	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	11q22.2	MMP12	rs626750-G	0.83	3E-9				Illumina [up to 701491] (imputed)	N
1368	chr11	102721250	102721251	rs72981675	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs72981675-T	0.14	1E-951		0.7478	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr11	102721250	102721251	rs72981675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72981675-T	0.109	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102721250	102721251	rs72981675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981675-T	0.114	4E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102721250	102721251	rs72981675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981675-T	0.115	7E-7		0.074	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102721858	102721859	rs72981680	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72981680-A	0.11	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102721858	102721859	rs72981680	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981680-A	0.114	4E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102721858	102721859	rs72981680	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981680-A	0.115	8E-7		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102722613	102722614	rs72981683	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72981683-A	0.109	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102722613	102722614	rs72981683	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981683-A	0.114	6E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102722613	102722614	rs72981683	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981683-A	0.114	1E-6		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102724210	102724211	rs72981684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72981684-T	0.11	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102724210	102724211	rs72981684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981684-T	0.114	4E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102724210	102724211	rs72981684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981684-T	0.115	9E-7		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102724729	102724730	rs586701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs586701-T	0.805	1E-9		0.014	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102724729	102724730	rs586701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs586701-T	0.806	7E-8		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102726141	102726142	rs737693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs737693-A	0.89	4E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102726141	102726142	rs737693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs737693-A	0.886	4E-10		0.019	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102726141	102726142	rs737693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs737693-A	0.885	9E-7		0.073	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102726539	102726540	rs72981698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72981698-T	0.11	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102726539	102726540	rs72981698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981698-T	0.114	4E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102726539	102726540	rs72981698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72981698-T	0.115	9E-7		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102727408	102727409	rs72983508	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72983508-A	0.11	4E-6		0.018	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102727408	102727409	rs72983508	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72983508-A	0.114	4E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102727408	102727409	rs72983508	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72983508-A	0.115	9E-7		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102728611	102728612	rs644885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs644885-A	0.217	2E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102728611	102728612	rs644885	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs644885-A	0.215	2E-6		0.052	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102728811	102728812	rs140839642	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs140839642-A	0.128	4E-6		0.014	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102728984	102728985	rs72983513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs72983513-T	0.891	4E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102728984	102728985	rs72983513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72983513-T	0.886	5E-10		0.019	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102728984	102728985	rs72983513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72983513-T	0.886	9E-7		0.073	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102729173	102729174	rs654600	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs654600-A	0.792	2E-8		0.013	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102729173	102729174	rs654600	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs654600-A	0.793	2E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102729173	102729174	rs654600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q22.2	MMP12	rs654600-A	NR	5E-7	(Perc15, Cases)	1.7	[-1.436-4.836] unit decrease	Illumina [7600000] (imputed)	N
1368	chr11	102729756	102729757	rs660599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs660599-A	0.222	7E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102729756	102729757	rs660599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs660599-A	0.219	1E-6		0.053	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102730032	102730033	rs72983521	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	11q22.2	MMP12	rs72983521-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1368	chr11	102730032	102730033	rs72983521	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	11q22.2	MMP12	rs72983521-?	NR	5E-8				NR [~ 8000000] (imputed)	N
1368	chr11	102730032	102730033	rs72983521	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72983521-T	0.934	6E-8		0.022	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102730638	102730639	rs674546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs674546-A	0.777	6E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102730638	102730639	rs674546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs674546-A	0.78	1E-6		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102733162	102733163	rs12808148	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	11q22.2	MMP3, MMP12	rs12808148-?	NR	1E-6		1.23	[NR]	Illumina [2543888] (imputed)	N
1368	chr11	102737191	102737192	rs28381684	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.2	MMP12	rs28381684-T	0.125	5E-111	(Macrophage metalloelastase, MMP12.4496.60.2)	0.78	[0.72-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
1368	chr11	102737191	102737192	rs28381684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP12	rs28381684-A	0.89	4E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102737191	102737192	rs28381684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs28381684-A	0.886	5E-10		0.019	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102737191	102737192	rs28381684	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs28381684-A	0.886	1E-6		0.073	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.2	MMP12	rs17368582-T	0.894375	5E-77	(MMP12, 4496_60_2)	0.699293	[0.63-0.77] unit increase	Illumina [> 1000000] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q22.2	MMP3, MMP12, BOLA3P1, RNU7-159P	rs17368582-C	0.1218656	1E-37	(Macrophage metalloelastase)	0.7442	[0.64-0.85] unit decrease	Affymetrix [509946]	N
1368	chr11	102738074	102738075	rs17368582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	MMP12	rs17368582-T	0.891	4E-6		0.018	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs17368582-T	0.886	8E-10		0.019	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs17368582-T	0.886	1E-6		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	11q22.2	MMP12	rs17368582-G	0.88	7E-9	(Moderate Centrilobular, EA)	0.02	[0.012-0.028] unit increase	Illumina [6942916] (imputed)	N
1368	chr11	102738074	102738075	rs17368582	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	11q22.2	MMP12	rs17368582-G	0.88	3E-9	(Moderate Centrilobular)	0.02	[0.012-0.028] unit increase	Illumina [6942916] (imputed)	N
1368	chr11	102742760	102742761	rs17368659	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q22.2	MMP12	rs17368659-C	0.85	3E-171		0.82	unit increase	Illumina [5270624] (imputed)	N
1368	chr11	102742760	102742761	rs17368659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs17368659-T	0.367	6E-10		0.019	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102742760	102742761	rs17368659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs17368659-T	0.362	1E-6		0.073	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102742760	102742761	rs17368659	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	11q22.2	MMP12	rs17368659-G	0.88	2E-7	(normal, EA)	0.04	[0.026-0.054] unit decrease	Illumina [6942916] (imputed)	N
1368	chr11	102742760	102742761	rs17368659	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	11q22.2	MMP12	rs17368659-G	0.88	1E-8	(normal)	0.04	[0.026-0.054] unit decrease	Illumina [6942916] (imputed)	N
1368	chr11	102744086	102744087	rs608194	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs608194-T	0.229	8E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1368	chr11	102744086	102744087	rs608194	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	MMP12	rs608194-T	0.228	3E-6		0.051	NR unit increase	Illumina [NR] (imputed)	N
1368	chr11	102744086	102744087	rs608194	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q22.2	MMP12	rs608194-T	NR	1E-7	(%LAA-950, Cases)	0.05	[-0.09504-0.19504] unit increase	Illumina [7600000] (imputed)	N
1368	chr11	102745790	102745791	rs2276109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP12	5,367 Icelandic ancestry individuals	NA	11q22.2		rs2276109-C	0.1068	1E-127		0.671654	[0.62-0.73] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102745790	102745791	rs2276109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs2276109-T	0.887	7E-10		0.019	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102745790	102745791	rs2276109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs2276109-T	0.887	1E-6		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102748694	102748695	rs17368814	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q22.2	Intergenic	rs17368814-A	0.534	5E-6		0.017	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102748694	102748695	rs17368814	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17368814-A	0.366	2E-9		0.018	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102748694	102748695	rs17368814	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17368814-A	0.362	3E-6		0.07	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102750263	102750264	rs144897250	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs144897250-A	0.01414	2E-33		0.969574	[0.81-1.13] unit decrease	Illumina [7506463] (imputed)	N
1368	chr11	102750263	102750264	rs144897250	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	11q22.2	MMP12, MMP13	rs144897250-?		3E-7				Illumina [7830195] (imputed)	N
1368	chr11	102752599	102752600	rs17368890	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17368890-T	0.934	9E-9		0.024	unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102752599	102752600	rs17368890	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs17368890-T	0.934	2E-6		0.096	NR unit decrease	Illumina [NR] (imputed)	N
1368	chr11	102754867	102754868	rs61493282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs61493282-T	0.073	8E-8		0.02	unit increase	Illumina [NR] (imputed)	N
1369	chr11	102760773	102760774	rs11225452	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs11225452-A	0.24	1E-11		0.0648	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1369	chr11	102770352	102770353	rs2005108	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	11q22.2	MMP12	rs2005108-?	NR	6E-8				NR [~ 8000000] (imputed)	N
1369	chr11	102770352	102770353	rs2005108	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	11q22.2	MMP12	rs2005108-?	NR	3E-7				NR [~ 8000000] (imputed)	N
1369	chr11	102770352	102770353	rs2005108	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	11q22.2	MMP12	rs2005108-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1369	chr11	102770352	102770353	rs2005108	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	11q22.2	BOLA3P1, RNU7-159P	rs2005108-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1369	chr11	102770352	102770353	rs2005108	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs2005108-T	0.118	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1369	chr11	102773809	102773809	rs35054791	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs35054791-T	0.65	3E-22		0.1088	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1369	chr11	102774843	102774844	rs1940938	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs1940938-A	0.122	1E-7		0.016	unit increase	Illumina [NR] (imputed)	N
1369	chr11	102777302	102777303	rs150986675	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.2	NR	rs150986675-?	NR	2E-23	(MMP-12)	0.675825	[0.54-0.81] unit decrease	Illumina [11901634] (imputed)	N
1369	chr11	102777302	102777303	rs150986675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs150986675-T	0.879	6E-8		0.016	unit decrease	Illumina [NR] (imputed)	N
1369	chr11	102787260	102787261	rs185686655	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs185686655-T	0.12	2E-63		0.2492	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1369	chr11	102789863	102789864	rs111850229	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs111850229-T	0.044	9E-30		0.2423	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1369	chr11	102795638	102795639	rs17297226	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP1	5,364 Icelandic ancestry individuals	NA	11q22.2		rs17297226-G	0.2271	7E-47		0.322549	[0.28-0.37] unit decrease	Illumina [7506463] (imputed)	N
1369	chr11	102795638	102795639	rs17297226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	11q22.2		rs17297226-A	0.75	9E-34		0.1396	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1369	chr11	102800277	102800278	rs72985562	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72985562-T	0.931	1E-6		0.021	unit decrease	Illumina [NR] (imputed)	N
1369	chr11	102801846	102801847	rs12788925	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q22.2	intergenic	rs12788925-A	0.5785	5E-7		0.0324	[0.02-0.045] unit increase	NR [8041861] (imputed)	N
1369	chr11	102829454	102829455	rs671188	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q22.2	NR	rs671188-?		3E-9	(MMP3)	0.2635	[NR] unit increase	Illumina [NR]	N
1369	chr11	102835039	102835040	rs72987535	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72987535-T	0.824	3E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1369	chr11	102836479	102836480	rs72987546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs72987546-T	0.831	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1369	chr11	102837558	102837559	rs4572101	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.2	Intergenic	rs4572101-T	0.198	7E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1369	chr11	102863134	102863135	rs17298829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q22.2	NR	rs17298829-A	0.093441	5E-9		0.022688128	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1369	chr11	102863134	102863135	rs17298829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q22.2		rs17298829-A	0.09343	9E-10		0.023691686	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1369	chr11	102887228	102887229	rs74380195	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11q22.3	MMP13, DCUN1D5	rs74380195-G	0.05	1E-9		4.02	[2.49-6.48]	Illumina [1556551]	N
1369	chr11	102891422	102891423	rs117849885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q22.3		rs117849885-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1370	chr11	102907758	102907759	rs72987587	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	11q22.3		rs72987587-T	0.94	2E-23		0.1792	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1370	chr11	102947464	102947465	rs7947821	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	DCUN1D5	rs7947821-T	0.75	2E-6		7.1429	[NR]	Affymetrix [up to 4467279] (imputed)	N
1370	chr11	102952975	102952976	rs2513993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q22.3		rs2513993-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1370	chr11	102967851	102967852	rs11225547	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	11q22.3	DCUN1D5	rs11225547-C	0.05	4E-8	(AA)	0.08	unit decrease	Affymetrix [5396780] (imputed)	N
1370	chr11	102977270	102977271	rs2513987	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q22.3	NA	rs2513987-A	0.2688	4E-10		0.0138	[0.0095-0.0181] unit decrease	NR [~ 27400000] (imputed)	N
1370	chr11	102980593	102980594	rs12283022	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	intergenic	rs12283022-G	0.75	2E-6		7.1429	[NR]	Affymetrix [up to 4467279] (imputed)	N
1370	chr11	103016192	103016193	rs11225569	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11q22.3	DYNC2H1, DCUN1D5, PDGFD	rs11225569-A	0.06	2E-6		3.06	[1.89-4.95]	Illumina [1556551]	N
1370	chr11	103021972	103021973	rs116672660	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs116672660-?	NR	5E-10	(MMP-12)	0.612556	[0.42-0.81] unit decrease	Illumina [11901634] (imputed)	N
1371	chr11	103050027	103050028	rs632672	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q22.3	NR	rs632672-G		3E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
1371	chr11	103067459	103067460	rs685395	28012008	Lu S	2016-12-23	J Bone Miner Metab	Bivariate genome-wide association analyses identified genetic pleiotropic effects for bone mineral density and alcohol drinking in Caucasians.	Spine bone mineral density and alcohol drinking	506 European ancestry males, 1,553 European ancestry females	NA	11q22.3	DYNC2H1	rs685395-?	NR	2E-8	(males)			Affymetrix [69108]	N
1371	chr11	103088413	103088414	rs680071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q22.3		rs680071-C	NR	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1371	chr11	103088413	103088414	rs680071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q22.3		rs680071-C	NR	7E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1371	chr11	103088413	103088414	rs680071	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q22.3	DYNC2H1	rs680071-T	0.119403	3E-8		0.0117393	[0.0076-0.0159] unit decrease	Affymetrix [12370749]	N
1371	chr11	103088413	103088414	rs680071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q22.3	NR	rs680071-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1371	chr11	103088413	103088414	rs680071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q22.3		rs680071-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1371	chr11	103127064	103127065	rs12294076	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	11q22.3	DYNC2H1	rs12294076-T	0.83	1E-7		6.25	[NR]	Affymetrix [up to 4467279] (imputed)	N
1372	chr11	103209983	103209984	rs313426	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	11q22.3	DYNC2H1, DCUN1D5, PDGFD	rs313426-A	0.31	2E-6		0.018	[0.010-0.026] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1372	chr11	103244931	103244932	rs74973608	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	11q22.3		rs74973608-A	0.073	4E-16		0.1164	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1372	chr11	103283651	103283652	rs185285034	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs185285034-?	NR	5E-10	(MMP-12)	0.813355	[0.56-1.07] unit decrease	Illumina [11901634] (imputed)	N
1373	chr11	103402685	103402686	rs17101053	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	PDGFD	rs17101053-?	NR	8E-6	(CE 16:0)	0.35236254	[0.2-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1374	chr11	103418157	103418158	rs716274	21118971	Wu C	2010-11-30	Cancer Res	Genome-wide interrogation identifies YAP1 variants associated with survival of small-cell lung cancer patients.	Small-cell lung cancer (survival)	245 Han Chinese ancestry cases	305 Han Chinese ancestry cases	11q22.3	DYNC2H1	rs716274-G	NR	9E-8	(AG genotype)	1.83	[1.47-2.29]	Affymetrix [265996]	N
1374	chr11	103431642	103431643	rs117921553	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs117921553-?	NR	2E-11	(MMP-12)	0.63322	[0.45-0.82] unit decrease	Illumina [11901634] (imputed)	N
1374	chr11	103463840	103463841	rs10895475	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	11q22.3	DYNC2H1, PDGFD	rs10895475-A	0.357	2E-7	(EA)	5.167	z score decrease	Affymetrix, Illumina [up to 1994688]	N
1374	chr11	103483709	103483710	rs141208948	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	11q22.3	NR	rs141208948-G	0.0205973	3E-6		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1374	chr11	103498149	103498150	rs1917448	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Depressive temperament	775 European ancestry individuals	NA	11q22.3		rs1917448-G	NR	5E-6		0.02761	unit decrease	Illumina [2550710] (imputed)	N
1374	chr11	103525753	103525754	rs7118412	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	11q22.3	intergenic	rs7118412-A	0.42	9E-6		0.09	[0.049-0.131] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
1374	chr11	103526023	103526024	rs7103004	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	11q22.3	intergenic	rs7103004-C	0.42	9E-6		0.09	[0.049-0.131] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
1374	chr11	103529631	103529632	rs12805875	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	11q22.3	intergenic	rs12805875-A	0.42	9E-6		0.09	[0.049-0.131] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
1374	chr11	103530365	103530366	rs4554859	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	11q22.3	intergenic	rs4554859-G	0.42	9E-6		0.09	[0.049-0.131] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
1375	chr11	103589093	103589094	rs1917445	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	11q22.3	PDGFD	rs1917445-?	NR	6E-7				Illumina [874956]	N
1375	chr11	103616564	103616565	rs141752671	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	11q22.3	Intergenic	rs141752671-G	NR	1E-7	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1375	chr11	103651018	103651019	rs143857982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.3	NR	rs143857982-G	0.01742	5E-9	(DPYSL2)	0.2431	NR unit increase	Illumina [1671387] (imputed)	N
1375	chr11	103660566	103660567	rs974819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q22.3		rs974819-C	NR	2E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1375	chr11	103660566	103660567	rs974819	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q22.3		rs974819-T	0.2887	1E-8		0.09353019	[0.059-0.128] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1375	chr11	103660566	103660567	rs974819	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	11q22.3	NR	rs974819-?	NR	2E-10				NR [up to 7000000]	N
1375	chr11	103660566	103660567	rs974819	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11q22.3	intergenic	rs974819-T	0.3082	1E-28		0.0614	[0.051-0.072] unit increase	Affymetrix [at least 7947838] (imputed)	N
1375	chr11	103660566	103660567	rs974819	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q22.3	intergenic	rs974819-T	0.3098	6E-29		0.0674	[0.056-0.079] unit increase	NR [8041861] (imputed)	N
1375	chr11	103660566	103660567	rs974819	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	11q22.3	PDGFD	rs974819-T	0.32	2E-9		1.07	[1.04-1.09]	Illumina [574919]	N
1375	chr11	103662848	103662849	rs187744216	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs187744216-?	NR	4E-9	(MMP-12)	0.868748	[0.58-1.16] unit decrease	Illumina [11901634] (imputed)	N
1375	chr11	103664408	103664409	rs11226017	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	11q22.3	DYNC2H1, PDGFD	rs11226017-C	0.63	3E-9		1.13	[1.08-1.17]	Illumina [5932413] (imputed)	N
1375	chr11	103664500	103664501	rs11226018	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11q22.3	DYNC2H1, PDGFD	rs11226018-T	0.49	2E-8		1.04	[1.00-1.09]	Illumina [5167567] (imputed)	N
1375	chr11	103668961	103668962	rs2019090	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11q22.3	PDGFD	rs2019090-A	0.327984	2E-18		1.07	[1.06-1.09]	NR [8126035] (imputed)	N
1375	chr11	103668961	103668962	rs2019090	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	11q22.3	NR	rs2019090-A	0.29	6E-10		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1375	chr11	103668961	103668962	rs2019090	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	11q22.3	MIR4693	rs2019090-A	0.29	8E-9		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
1375	chr11	103668961	103668962	rs2019090	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	11q22.3	PDGFD	rs2019090-A	0.36	4E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1375	chr11	103669291	103669291	rs5794276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs5794276-TTATTGAA	NR	4E-20		0.0859	[0.067-0.104] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1375	chr11	103670448	103670449	rs61904693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs61904693-C	0.358245395	6E-12		0.08515598	[0.061-0.109] unit decrease	Illumina [13427711] (imputed)	N
1375	chr11	103670448	103670449	rs61904693	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	11q22.3	DYNC2H1, MIR4693	rs61904693-?	NR	9E-19		0.0921687	[0.072-0.113] unit decrease	Illumina [19707525] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs2128739-C	NR	1E-19		0.08	[0.063-0.097] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	11q22.3		rs2128739-C	NR	7E-12		0.0729	[0.052-0.094] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11q22.3		rs2128739-C	NR	7E-19		0.0758	[0.059-0.092] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or coronary artery disease (pleiotropy)	12,550 European and unknown ancestry chronic pulmonary obstructive disease cases, 60,801 European and unknown ancestry coronary artery disease cases, 169,872 European and unknown ancestry controls	NA	11q22.3	RP11-563P16.1	rs2128739-?	NR	3E-12				NR [up to 8619474] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q22.3	intergenic	rs2128739-A	0.305	6E-27		0.074	[0.06-0.088] unit increase	Affymetrix [7947838] (imputed)	N
1375	chr11	103673276	103673277	rs2128739	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	11q22.3	PDGFD	rs2128739-A	0.323536	7E-11		1.07	[1.05- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1375	chr11	103673293	103673294	rs2839812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs2839812-A	NR	3E-10		0.0857	[0.059-0.112] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1375	chr11	103673293	103673294	rs2839812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	11q22.3		rs2839812-A	0.39684759	4E-8		0.067201175	[0.043-0.091] unit decrease	Illumina [13429980] (imputed)	N
1375	chr11	103673293	103673294	rs2839812	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q22.3	DYNC2H1, MIR4693	rs2839812-?	NR	4E-43		0.0720573	[0.062-0.082] unit decrease	Illumina [4804024] (imputed)	N
1375	chr11	103673293	103673294	rs2839812	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	11q22.3	DYNC2H1, MIR4693	rs2839812-A	0.279	1E-11				Affymetrix [28000000] (imputed)	N
1375	chr11	103673293	103673294	rs2839812	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	11q22.3	PDGFD	rs2839812-T	0.307	2E-11		1.06	[1.04-1.08]	Affymetrix [9149595] (imputed)	N
1376	chr11	103684098	103684099	rs148883465	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	11q22.3	Intergenic	rs148883465-G	NR	3E-8	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1376	chr11	103693626	103693627	rs11226029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs11226029-A	0.390530935	4E-9		0.11686639	[0.078-0.156] unit decrease	Illumina [13425416] (imputed)	N
1376	chr11	103693626	103693627	rs11226029	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	11q22.3		rs11226029-?	NR	3E-11		0.061	[0.041-0.081] unit decrease	NR [NR] (imputed)	N
1376	chr11	103696850	103696851	rs1384705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11q22.3		rs1384705-T	0.390512637	9E-11		0.08807851	[0.061-0.115] unit decrease	Illumina [13426705] (imputed)	N
1376	chr11	103696850	103696851	rs1384705	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	11q22.3	PDGFD	rs1384705-C	0.293909	3E-11		1.08	[1.06-1.11]	NR [10903881] (imputed)	N
1376	chr11	103700905	103700906	rs7118018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs7118018-G	0.370941706	2E-15		0.11079755	[0.084-0.138] unit decrease	Illumina [13427135] (imputed)	N
1376	chr11	103770920	103770921	rs7127296	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	DDI1	rs7127296-?	NR	8E-6	(anthranilic acid)	0.20721538	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1376	chr11	103777893	103777894	rs12420286	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	11q22.3	NR	rs12420286-C		2E-6		0.2376	[0.14-0.34] SD units decrease	NR [10700000] (imputed)	N
1376	chr11	103780129	103780129	rs60621493	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs60621493-?	NR	3E-9	(MMP-12)	0.586531	[0.39-0.78] unit decrease	Illumina [11901634] (imputed)	N
1376	chr11	103798826	103798827	rs117457382	33836062	Kong XZ	2021-04-09	Cereb Cortex	Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew.	Brain asymmetrical skew (vertical)	33,996 European ancestry individuals	NA	11q22.3	PDGFD	rs117457382-A		2E-7		0.0020824	[0.0013-0.0029] unit decrease	Affymetrix [9904141] (imputed)	N
1376	chr11	103801941	103801942	rs901781	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFD	5,362 Icelandic ancestry individuals	NA	11q22.3		rs901781-T	0.4748	6E-7		0.0922774	[0.056-0.129] unit decrease	Illumina [7506463] (imputed)	N
1376	chr11	103808151	103808152	rs10895547	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	11q22.3	PDGFD	rs10895547-T	0.23	3E-6		0.0747	[0.043-0.106] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1377	chr11	103844778	103844779	rs7103465	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	11q22.3	PDGFD	rs7103465-A	0.03	4E-7		0.248	[0.15-0.34] unit increase	Illumina [32241096] (imputed)	N
1377	chr11	103860838	103860839	rs10895556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q22.3		rs10895556-C	NR	3E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1377	chr11	103861873	103861874	rs72393838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q22.3		rs72393838-G	NR	1E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1377	chr11	103870639	103870640	rs115739682	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q22.3	PDGFD	rs115739682-T	0.808433	1E-9		0.0161412	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1377	chr11	103870639	103870640	rs115739682	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q22.3	PDGFD	rs115739682-T	0.808467	4E-8		0.0145929	[0.0094-0.0198] unit increase	Affymetrix [NR] (imputed)	N
1377	chr11	103870640	103870641	rs145184406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q22.3		rs145184406-A	NR	3E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1377	chr11	103870640	103870641	rs145184406	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q22.3	PDGFD	rs145184406-T	0.808425	4E-9		0.0147506	[0.0098-0.0197] unit increase	Affymetrix [NR] (imputed)	N
1377	chr11	103871038	103871039	rs10791660	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q22.3	PDGFD	rs10791660-?	NR	4E-11		0.0218	[0.016-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
1377	chr11	103871403	103871404	rs12146566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q22.3	PDGFD	rs12146566-A	0.802646	1E-8		0.0136347	[0.0089-0.0183] unit increase	Affymetrix [NR] (imputed)	N
1377	chr11	103916642	103916643	rs77942836	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	11q22.3	PDGFD	rs77942836-A	0.02	8E-6		0.53	[0.29-0.77] unit decrease	Illumina [14638245] (imputed)	N
1378	chr11	103966720	103966721	rs591118	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Corticosteroid-induced adrenal suppression (peak cortisol < 500 nmol/L)	up to 175 European ancestry child cases with asthma, at least 232 European ancestry child controls with asthma, general adult population controls	32 child cases with asthma, 49 child controls with asthma, 17 adult cases with COPD, 61 adult controls with COPD	11q22.3	PDGFD	rs591118-A	NR	4E-10		4.05	[2.00-8.21]	Illumina [430492]	N
1378	chr11	103966720	103966721	rs591118	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Corticosteroid-induced adrenal suppression (peak cortisol < 350 nmol/L)	up to 35 European ancestry child cases with asthma, at least 372 European ancestry child controls with asthma, general adult population controls	6 child cases with asthma, 75 child controls with asthma	11q22.3	PDGFD	rs591118-A	NR	4E-9		5.89	[2.97-11.68]	Illumina [430492]	N
1378	chr11	103982861	103982862	rs10895575	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	11q22.3	NR	rs10895575-A	NR	2E-6		0.8205	[NR]	Illumina [4867007] (imputed)	N
1378	chr11	103984553	103984554	rs11226171	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	DDI1	rs11226171-?	NR	2E-6	(alanine)	1.9834033	[1.17-2.79] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1378	chr11	104012655	104012656	rs1681464	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q22.3		rs1681464-A	0.41	8E-12		6.84	z score increase	Affymetrix [9061022] (imputed)	N
1378	chr11	104012655	104012656	rs1681464	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q22.3		rs1681464-A	0.41	8E-13		7.17	z score increase	Affymetrix [9061022] (imputed)	N
1378	chr11	104012655	104012656	rs1681464	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q22.3	NR	rs1681464-A	0.4249	5E-12				NR [9056863] (imputed)	N
1378	chr11	104012655	104012656	rs1681464	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	11q22.3	PDGFD	rs1681464-?		8E-11	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1378	chr11	104012655	104012656	rs1681464	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	11q22.3	PDGFD	rs1681464-?	NR	3E-10	(EA)	0.0829	[0.057-0.109] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1378	chr11	104031597	104031598	rs7950273	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.3	PDGFD	rs7950273-G	0.288	1E-24	(Platelet-derived growth factor D, PDGFD.9341.1.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1378	chr11	104032042	104032043	rs10895596	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFD	5,362 Icelandic ancestry individuals	NA	11q22.3		rs10895596-A	0.2963	4E-245		0.617756	[0.58-0.65] unit decrease	Illumina [7506463] (imputed)	N
1378	chr11	104032042	104032043	rs10895596	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.3	PDGFD	rs10895596-G	0.69953125	3E-129	(PDGFD, 9341_1_3)	0.62404776	[0.58-0.67] unit increase	Illumina [> 1000000] (imputed)	N
1378	chr11	104041610	104041611	rs7930114	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q22.3	NR	rs7930114-?	NR	2E-6		0.4242	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1378	chr11	104070667	104070668	rs2449611	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	11q22.3	KIF26B	rs2449611-?		4E-8				NR [7428630] (imputed)	N
1379	chr11	104073624	104073625	rs117397462	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q22.3	PDGFD	rs117397462-C	0.0510046347921228	4E-7	(G_Sporobacter_RNT)	0.313852	[0.19-0.44] unit decrease	Illumina [7711310] (imputed)	N
1380	chr11	104221572	104221573	rs11226319	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	11q22.3	PDGFD	rs11226319-A	0.16	2E-8		1.032	[1.021-1.043]	Affymetrix [7736308] (imputed)	N
1380	chr11	104221572	104221573	rs11226319	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	11q22.3	NR	rs11226319-A	0.16	4E-7		0.036	[0.022-0.05] unit increase	Affymetrix [NR] (imputed)	N
1380	chr11	104241239	104241240	rs3895978	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	11q22.3		rs3895978-C	0.94	8E-7		0.99	[0.6-1.38] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1380	chr11	104295650	104295650	rs71467219	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs71467219-?	NR	2E-17	(MMP-12)	0.746264	[0.57-0.92] unit decrease	Illumina [11901634] (imputed)	N
1381	chr11	104334238	104334239	rs11226373	20031604	Cheng YC	2009-08-01	Circ Cardiovasc Genet	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	11q22.3	MMP-3, MMP-1	rs11226373-G	0.15	2E-18		0.44	[NR] unit increase	Affymetrix [338079]	N
1381	chr11	104345201	104345202	rs7484234	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	11q22.3	intergenic	rs7484234-C	0.42	7E-7		1.1363636	[1.09-1.2]	Affymetrix, Illumina [16531985] (imputed)	N
1381	chr11	104385655	104385656	rs10895702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q22.3		rs10895702-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1381	chr11	104411776	104411777	rs75134844	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs75134844-?	NR	1E-10	(MMP-12)	0.65185	[0.45-0.85] unit decrease	Illumina [11901634] (imputed)	N
1381	chr11	104420699	104420700	rs60064090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q22.3	Intergenic	rs60064090-A	0.2159	4E-8	(MTAG)	0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr11	104446362	104446363	rs618401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q22.3	Intergenic	rs618401-A	0.5263	5E-8	(MTAG)	0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1382	chr11	104585713	104585714	rs55874708	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs55874708-?	NR	2E-13	(MMP-12)	0.599424	[0.44-0.76] unit decrease	Illumina [11901634] (imputed)	N
1383	chr11	104673659	104673660	rs11226509	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	11q22.3	CASP12	rs11226509-C	NR	3E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1383	chr11	104673659	104673660	rs11226509	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	11q22.3	CASP12	rs11226509-C	NR	1E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1383	chr11	104677869	104677870	rs1144403	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q22.3	NR	rs1144403-A	NR	8E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1383	chr11	104683016	104683017	rs34591112	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q22.3	CASP12	rs34591112-T	0.21	5E-9		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1383	chr11	104702859	104702860	rs61892077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q22.3		rs61892077-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1383	chr11	104710836	104710837	rs74553731	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	11q22.3	RP11-693N9.1	rs74553731-A	0.0026	5E-6		0.6604	[0.38-0.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1383	chr11	104710836	104710837	rs74553731	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	11q22.3	RP11-693N9.1	rs74553731-A	0.0024	6E-6		0.6447	[0.36-0.92] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1384	chr11	104727552	104727553	rs499423	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	11q22.3	Intergenic	rs499423-A		3E-7		0.057	[NR] unit increase	Illumina [24111857] (imputed)	N
1384	chr11	104744769	104744770	rs79930850	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q22.3	Intergenic	rs79930850-A	0.99	3E-6	(liability model)	0.45	[0.25-0.65] unit decrease	NR [19725427] (imputed)	N
1384	chr11	104782072	104782073	rs72976995	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs72976995-?	NR	1E-13	(MMP-12)	0.609066	[0.45-0.77] unit decrease	Illumina [11901634] (imputed)	N
1384	chr11	104814537	104814538	rs55743104	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q22.3	NR	rs55743104-?	NR	8E-6		0.0076254	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
1384	chr11	104826603	104826604	rs666723	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11q22.3	CASP4	rs666723-A	NR	7E-6	(males)	0.12	[0.061-0.179] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1385	chr11	104900188	104900189	rs187940290	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	11q22.3	CASP1	rs187940290-T	0.0019	5E-6		0.6193	[0.35-0.89] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1385	chr11	104966126	104966127	rs117504700	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q22.3	NR	rs117504700-?	NR	3E-9		5.934	NR z score decrease	Illumina [at least 830937] (imputed)	N
1385	chr11	104972517	104972518	rs11226613	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls		CASP1P1, CARD17	rs11226613-T	0.17	5E-6		1.4286	[0.6-0.81]	Illumina [1795103]	N
1386	chr11	105036177	105036178	rs5002812	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	11q22.3		rs5002812-A	0.74	2E-17		0.0848	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1386	chr11	105068038	105068039	rs11605652	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	11q22.3	intergenic	rs11605652-A	0.185	7E-6		0.8233	[0.47-1.18] unit increase	Illumina [at least 4683137] (imputed)	N
1388	chr11	105277569	105277570	rs117325735	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	11q22.3	NR	rs117325735-?		2E-7	(PCB156)	1.29	[0.8-1.78] unit increase	Illumina [8736858] (imputed)	N
1389	chr11	105454258	105454259	rs145171932	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	An7 abundance in stool	5,959 Finnish ancestry individuals	NA	11q22.3		rs145171932-A	0.0272972	4E-8		0.123477	[0.079-0.168] unit increase	Illumina [7980478] (imputed)	N
1390	chr11	105513060	105513061	rs3170	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q22.3	NR	rs3170-A	0.7366	1E-8	(EA)	0.0973	[0.064-0.131] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1390	chr11	105513060	105513061	rs3170	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q22.3	NR	rs3170-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1390	chr11	105541700	105541701	rs77498389	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Peptococcia abundance in stool	5,959 Finnish ancestry individuals	NA	11q22.3		rs77498389-A	0.010378	4E-8		0.142002	[0.091-0.193] unit increase	Illumina [7980478] (imputed)	N
1390	chr11	105556597	105556598	rs11601239	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	11q22.3	GRIA4	rs11601239-C	0.46	6E-9		0.095	[0.064-0.126] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1390	chr11	105596275	105596276	rs1938964	34319593	Li N	2021-07-28	Int J Cancer	Genetic variants of CYP4F12 gene are associated with glioma susceptibility.	Glioma	485 Han Chinese ancestry cases, 485 Han Chinese ancestry controls	NA	11q22.3	GRIA4	rs1938964-?	NR	5E-19		0.62	(0.51-0.75)	Affymetrix [4635191] (imputed)	N
1390	chr11	105596884	105596885	rs1954761	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q22.3	GRIA4	rs1954761-T	0.371	5E-17		8.397	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1390	chr11	105600357	105600358	rs10895869	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q22.3	GRIA4, MSANTD4, KBTBD3	rs10895869-?		4E-39				Affymetrix, Illumina [NR] (imputed)	N
1390	chr11	105600357	105600358	rs10895869	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q22.3	NR	rs10895869-A	0.3637	3E-9		0.0816	[0.055-0.108] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1390	chr11	105626621	105626622	rs12807873	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q22.3	GRIA4	rs12807873-T	0.999	5E-6	(AA)	2.582	NR unit increase	Illumina [NR] (imputed)	N
1390	chr11	105632752	105632752	rs68081839	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	11q22.3	GRIA4	rs68081839-AT	0.6855	2E-8		0.6587	[0.43-0.89] unit increase	Illumina [9520174] (imputed)	N
1391	chr11	105665158	105665160	rs71041628	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11q22.3	GRIA4	rs71041628-?	NR	1E-11		1.055	[1.039-1.072]	Illumina [13762925] (imputed)	N
1391	chr11	105692051	105692052	rs1002191	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q22.3	NR	rs1002191-G		2E-16		0.1	[0.08-0.12] unit increase	NR [NR]	N
1391	chr11	105746051	105746052	rs590414	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q22.3		rs590414-A	0.5	3E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1391	chr11	105746051	105746052	rs590414	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11q22.3	GRIA4	rs590414-A	0.497739	2E-10		0.0134661	[0.0094-0.0175] unit decrease	NR [16516521] (imputed)	N
1392	chr11	105812838	105812839	rs641574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q22.3	Intergenic	rs641574-A	0.6142	1E-11	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1392	chr11	105814769	105814770	rs1939800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q22.3	Intergenic	rs1939800-T	0.3812	2E-11	(MTAG)	0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1392	chr11	105814769	105814770	rs1939800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q22.3	Intergenic	rs1939800-T	0.3815	3E-13	(MTAG)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1392	chr11	105814769	105814770	rs1939800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q22.3	Intergenic	rs1939800-T	0.3851	1E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1392	chr11	105827908	105827909	rs7116046	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q22.3	NR	rs7116046-T	NR	3E-8		5.526	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1392	chr11	105845561	105845562	rs592656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q22.3	Intergenic	rs592656-G	0.363	4E-8		0.0129	[0.0082-0.0176] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1392	chr11	105863823	105863824	rs148697518	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs148697518-?	NR	2E-9	(MMP-12)	0.687813	[0.46-0.91] unit decrease	Illumina [11901634] (imputed)	N
1393	chr11	105910790	105910791	rs11226905	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	KIAA1826	rs11226905-?	NR	3E-6	(LPE 18:0)	0.21160069	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1393	chr11	106033989	106033990	rs74462470	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.3	NR	rs74462470-A	0.0122	3E-8	(HEXB)	0.1145	NR unit increase	Illumina [1671387] (imputed)	N
1394	chr11	106087460	106087461	rs505416	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	11q22.3		rs505416-G	NR	7E-6		1.27763	[1.17-1.38] unit increase	Affymetrix [825927] (imputed)	N
1395	chr11	106193900	106193900	rs10625784	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	11q22.3	LOC643855, AASDHPPT	rs10625784-TAAA	0.99	8E-7		0.23	[0.13-0.42]	Illumina [8744746] (imputed)	N
1395	chr11	106216509	106216510	rs10750754	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	11q22.3	AASDHPPT, GUCY1A2	rs10750754-G	0.36	6E-6	(Tangent line angle of el3)	0.011	[NR] unit increase	Affymetrix [311944]	N
1395	chr11	106251513	106251514	rs527709	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	KBTBD3	rs527709-?	NR	4E-6	(LPC 14:0)	0.31883198	[0.18-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1395	chr11	106253244	106253245	rs72992766	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q22.3	NR	rs72992766-?	NR	3E-9	(MMP-12)	0.699102	[0.47-0.93] unit decrease	Illumina [11901634] (imputed)	N
1395	chr11	106277945	106277946	rs113665227	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect)	532 African American donors	250 African American donors	11q22.3	intergenic	rs113665227-?	NR	2E-7		0.68	NR unit increase	Illumina [> 13000000] (imputed)	N
1396	chr11	106306870	106306871	rs1512436	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	11q22.3	GUCY1A2	rs1512436-?	0.447	1E-6	(same direction)	1.0752687	[1.05-1.11]	Illumina [up to 6000000] (imputed)	N
1396	chr11	106330161	106330162	rs10895959	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	11q22.3	intergenic	rs10895959-?	NR	3E-6	(binary)			Perlegen [429981]	N
1397	chr11	106465538	106465539	rs12421832	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	11q22.3	intergenic	rs12421832-G	0.01	9E-6				Illumina [331281]	N
1397	chr11	106488047	106488048	rs1793054	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	11q22.3		rs1793054-G	NR	2E-6		1.0667	[0.63-1.5] unit decrease	Illumina [NR] (imputed)	N
1397	chr11	106490781	106490782	rs61903125	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q22.3	NR	rs61903125-G	NR	8E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
1397	chr11	106496037	106496038	rs1791581	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11q22.3	GUCY1A2	rs1791581-A	0.17	8E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1397	chr11	106523223	106523224	rs12364992	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q22.3	GUCY1A2	rs12364992-G	0.176	6E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1397	chr11	106543464	106543465	rs17105932	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	11q22.3	GUCY1A2	rs17105932-?		7E-6	(AA, case-control analysis)	2.22	[NR]	Affymetrix [up to 730090]	N
1398	chr11	106586472	106586473	rs659722	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	11q22.3	NR	rs659722-?	NR	6E-6		0.118772	[0.067-0.17] unit increase	Affymetrix [9658292] (imputed)	N
1399	chr11	106700050	106700051	rs75051536	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	GUCY1A2	rs75051536-?		5E-6				Illumina [4322238] (imputed)	N
1400	chr11	106827976	106827977	rs117603308	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	11q22.3	Intergenic	rs117603308-T	0.026	9E-6		1.229	[NR]	Illumina [9112387] (imputed)	N
1400	chr11	106828740	106828741	rs10890627	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.3	NR	rs10890627-?	NR	5E-8				Affymetrix [NR]	N
1401	chr11	106969070	106969071	rs117259798	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	NR	rs117259798-?		4E-6				Illumina [4322238] (imputed)	N
1401	chr11	106983566	106983567	rs11827590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.3	NR	rs11827590-T	0.01045	2E-8	(TPP1)	0.2402	NR unit increase	Illumina [1671387] (imputed)	N
1401	chr11	106998074	106998075	rs17092224	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	11q22.3	CWF19L2	rs17092224-C	0.11	4E-6		0.27	[0.15-0.39] unit decrease	Illumina [5918868] (imputed)	N
1401	chr11	107073285	107073286	rs11608075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q22.3		rs11608075-?	NR	9E-32				NR [~ 8900000] (imputed)	N
1401	chr11	107081840	107081841	rs7951348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.3	GUCY1A2, CWF19L2	rs7951348-C		4E-11		0.252	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1401	chr11	107081840	107081841	rs7951348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.3	GUCY1A2, CWF19L2	rs7951348-C		1E-6		0.122	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1401	chr11	107081840	107081841	rs7951348	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.3	GUCY1A2, CWF19L2	rs7951348-C		2E-7		0.12	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1402	chr11	107091429	107091429	rs142065594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q22.3		rs142065594-TTG	NR	1E-18		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1402	chr11	107091429	107091429	rs142065594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q22.3		rs142065594-TTG	NR	4E-18		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1402	chr11	107091429	107091429	rs142065594	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q22.3	intergenic	rs142065594-TTG	0.5535	7E-12		0.2276	[0.16-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1402	chr11	107091854	107091855	rs4753788	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q22.3	intergenic	rs4753788-A	0.537	7E-8		0.034	[0.022-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1402	chr11	107095178	107095179	rs4754195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q22.3		rs4754195-C	NR	8E-10		0.0302	[0.021-0.04] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1402	chr11	107096776	107096777	rs4754196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q22.3		rs4754196-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1402	chr11	107097539	107097540	rs66682451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q22.3		rs66682451-G	NR	1E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1402	chr11	107117690	107117691	rs2216998	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	NR	rs2216998-?		4E-7				Illumina [4322238] (imputed)	N
1402	chr11	107126352	107126353	rs11212104	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q22.3	RP11-819C21.1	rs11212104-G	0.435024	2E-10		0.03856119	[0.027-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
1402	chr11	107128908	107128909	rs10789588	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	11q22.3	RP11-819C21.1	rs10789588-G	0.432521	6E-9		0.04634549	[0.031-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
1402	chr11	107140076	107140077	rs12224337	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q22.3	intergenic	rs12224337-A	0.4863	8E-9		0.1406	[0.093-0.188] mmHg increase	Affymetrix [NR] (imputed)	N
1402	chr11	107141973	107141974	rs968454	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q22.3		rs968454-A	0.7569	2E-10	(conditional-joint)	0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1402	chr11	107155910	107155911	rs7929345	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	NR	rs7929345-?		5E-6				Illumina [4322238] (imputed)	N
1402	chr11	107184295	107184296	rs664485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11q22.3		rs664485-G	NR	2E-9		0.0506	[0.034-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1402	chr11	107184295	107184296	rs664485	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	11q22.3	RP11-819C21.1	rs664485-A	0.186539	5E-9		0.062066164	[0.041-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
1402	chr11	107188148	107188149	rs10890710	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	NR	rs10890710-?		3E-6				Illumina [4322238] (imputed)	N
1402	chr11	107197605	107197606	rs630693	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	11q22.3	CWF19L2	rs630693-C	0.53	8E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
1402	chr11	107197639	107197640	rs3758911	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q22.3	CWF19L2	rs3758911-T	0.663	9E-8		0.0356	[0.022-0.049] unit decrease	NR [8041861] (imputed)	N
1403	chr11	107240736	107240737	rs11212190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q22.3		rs11212190-T	NR	4E-14		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1403	chr11	107262509	107262510	rs11212197	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	CWF19L2	rs11212197-?		8E-7				Illumina [4322238] (imputed)	N
1403	chr11	107262509	107262510	rs11212197	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	CWF19L2	rs11212197-?		4E-6				Illumina [4322238] (imputed)	N
1403	chr11	107320643	107320644	rs687991	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q22.3	CWF19L2	rs687991-?		9E-6				Illumina [4322238] (imputed)	N
1403	chr11	107347276	107347277	rs11212260	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q22.3	NR	rs11212260-C	0.0281428517133956	9E-6	(IGP53)	0.4437	[0.25-0.64] unit increase	Illumina [~ 2500000] (imputed)	N
1403	chr11	107347276	107347277	rs11212260	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q22.3	NR	rs11212260-C	0.0281428517133956	7E-6	(IGP57)	0.4507	[0.25-0.65] unit increase	Illumina [~ 2500000] (imputed)	N
1403	chr11	107347276	107347277	rs11212260	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q22.3	NR	rs11212260-C	0.0281428517133956	5E-6	(IGP17)	0.455	[0.26-0.65] unit increase	Illumina [~ 2500000] (imputed)	N
1404	chr11	107354311	107354312	rs7937106	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	11q22.3	ALKBH8	rs7937106-C	NR	6E-8		1.69	[1.40-2.04]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1404	chr11	107367792	107367793	rs583852	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q22.3	ALKBH8	rs583852-C	0.663314910025707	3E-6	(G_Desulfovibrio_HB)	0.255497	[0.15-0.36] unit decrease	Illumina [7711310] (imputed)	N
1404	chr11	107429422	107429423	rs1950031	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	11q22.3	NR	rs1950031-C	NR	7E-6		0.009476	[0.0053-0.0136] unit increase	Illumina [~ 540852]	N
1404	chr11	107449949	107449950	rs139077481	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11q22.3	ELMOD1	rs139077481-T	0.99	3E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1404	chr11	107450938	107450939	rs149011512	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	11q22.3	ALKBH8, ELMOD1	rs149011512-A	0.034	4E-6		1.82	[1.57-2.07]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1404	chr11	107458702	107458703	rs1528495	30265060	MacKillop J	2018-09-27	Exp Clin Psychopharmacol	Genetic influences on delayed reward discounting: A genome-wide prioritized subset approach.	Delayed reward discounting	986 European ancestry individuals	NA	11q22.3	NR	rs1528495-G	0.493	5E-6		0.201673	[0.12-0.29] unit increase	Illumina [4883968] (imputed)	N
1405	chr11	107480789	107480790	rs147787000	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		ELMOD1	rs147787000-A	0.03	7E-6				Illumina [1679420] (imputed)	N
1405	chr11	107481517	107481518	rs10431058	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	11q22.3	NR	rs10431058-?	NR	8E-7	(optimism)			Illumina [535076]	N
1405	chr11	107514390	107514391	rs7928246	32758111	He M	2020-08-06	J Dent Res	Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.	Nonsyndromic cleft palate	994 Han Chinese ancestry cases, 2,963 Han Chinese ancestry controls	1,095 Han Chinese ancestry cases, 6,352 Han Chinese ancestry controls	11q22.3	NR	rs7928246-?	NR	2E-6		0.41	NR	Illumina [750091]	N
1406	chr11	107653494	107653495	rs4754257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Effector Memory CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q22.3		rs4754257-A	0.00802	4E-8		1.227	[0.79-1.66] unit decrease	Illumina [16410374] (imputed)	N
1406	chr11	107653494	107653495	rs4754257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on Central Memory CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q22.3		rs4754257-A	0.00802	1E-8		1.244	[0.82-1.67] unit decrease	Illumina [16410374] (imputed)	N
1406	chr11	107653494	107653495	rs4754257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on CD45RA- CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q22.3		rs4754257-A	0.00802	5E-9		1.293	[0.86-1.72] unit decrease	Illumina [16410374] (imputed)	N
1406	chr11	107653494	107653495	rs4754257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HVEM on CD4+ T cell	1,247 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q22.3		rs4754257-A	0.00802	2E-8		1.227	[0.8-1.65] unit decrease	Illumina [16410374] (imputed)	N
1406	chr11	107659452	107659453	rs113690667	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11q22.3	NR	rs113690667-?	NR	3E-6		0.00977	[0.0057-0.0139] unit decrease	Affymetrix [9658292] (imputed)	N
1406	chr11	107671678	107671679	rs12803802	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11q22.3	NR	rs12803802-?	NR	1E-6		0.0874	[0.053-0.122] unit increase	Illumina [~ 7800000] (imputed)	N
1406	chr11	107676542	107676543	rs542160	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q22.3		rs542160-T	0.50885	5E-8		0.1295	[0.083-0.176] unit decrease	Illumina [18380839] (imputed)	N
1407	chr11	107756550	107756551	rs2186903	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	11q22.3	SLC35F2, RAB39	rs2186903-A		4E-6	(Modelling analysis)	1.07	[1.04-1.11]	NR [1252901] (imputed)	N
1407	chr11	107772103	107772104	rs563811	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	11q22.3		rs563811-A	NR	3E-7		0.0347	unit decrease	Illumina [2550710] (imputed)	N
1407	chr11	107791927	107791927	rs5794578	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	11q22.3	NR	rs5794578-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1407	chr11	107804570	107804571	rs2442690	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	11q22.3	NR	rs2442690-?	NR	4E-6		1.087098	[1.05-1.13]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1407	chr11	107835562	107835563	rs118021886	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	11q22.3	NR	rs118021886-A	NR	7E-6	(male)	0.5854	[0.33-0.84] unit decrease	Illumina [11133794] (imputed)	N
1408	chr11	107900706	107900707	rs3781871	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	11q22.3	NR	rs3781871-?	NR	1E-6		0.1318	[0.079-0.184] unit decrease	Illumina [at least 560000] (imputed)	N
1408	chr11	107967349	107967350	rs138193887	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q22.3	ATM	rs138193887-A	0.92	4E-7	(EA)	0.18808	[0.12-0.26] unit increase	Illumina [8380626] (imputed)	N
1408	chr11	107983088	107983089	rs74632205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q22.3	RP11-144G7.2	rs74632205-C	0.110574	1E-10		0.023218798	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr11	108009926	108009927	rs3741049	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	11q22.3	NR	rs3741049-?	NR	2E-6		0.1276	[0.076-0.18] unit decrease	Illumina [at least 560000] (imputed)	N
1409	chr11	108025213	108025214	rs4754299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q22.3	NPAT	rs4754299-T	0.564344	5E-21		0.021309944	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1409	chr11	108044994	108044995	rs7129527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q22.3	NPAT	rs7129527-G	0.4088	1E-26		0.04004646	[0.033-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1409	chr11	108048540	108048541	rs4754301	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	11q22.3	NPAT	rs4754301-A	0.55	7E-11		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1409	chr11	108055198	108055198	rs368848598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q22.3	NPAT	rs368848598-CAA	0.403806	7E-27		0.024691377	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr11	108067234	108067238	rs112971307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q22.3	NPAT	rs112971307-A	0.55799	2E-13		0.016442833	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr11	108087381	108087381	rs10665850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q22.3	NPAT	rs10665850-T	0.434231	2E-14		0.017181637	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1409	chr11	108087381	108087381	rs10665850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q22.3	NR	rs10665850-I	0.565933	1E-15		0.016456	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1409	chr11	108105592	108105593	rs228595	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	11q22.3	ATM	rs228595-A	0.42	1E-8		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1409	chr11	108111429	108111430	rs60217012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q22.3		rs60217012-T	NR	6E-11		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1409	chr11	108116699	108116700	rs679782	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q22.3	NR	rs679782-C		8E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
1409	chr11	108131645	108131646	rs594153	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	11q22.3	ATM	rs594153-?	NR	1E-11		0.02958	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1410	chr11	108136889	108136890	rs228605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q22.3		rs228605-T	NR	3E-21		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1410	chr11	108138002	108138003	rs1800056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs1800056-T	0.986858	2E-13				Affymetrix, Illumina [23472807] (imputed)	N
1410	chr11	108138002	108138003	rs1800056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q22.3	NR	rs1800056-T	0.986419	3E-16		0.066816	[0.051-0.083] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1410	chr11	108140908	108140909	rs637064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q22.3	NR	rs637064-T	0.556128	5E-34		0.024251	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1410	chr11	108140908	108140909	rs637064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q22.3		rs637064-?	NR	8E-33				NR [~ 8900000] (imputed)	N
1410	chr11	108143181	108143182	rs664677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q22.3		rs664677-T	NR	5E-25		0.0198	[0.016-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1410	chr11	108143181	108143182	rs664677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs664677-T	0.542741	2E-34				Affymetrix, Illumina [24588908] (imputed)	N
1410	chr11	108143181	108143182	rs664677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	11q22.3	NR	rs664677-C	0.583218	4E-10		0.023915	[0.016-0.031] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDELC2	5,354 Icelandic ancestry individuals	NA	11q22.3		rs1800057-G	0.01901	9E-168		1.82472	[1.7-1.95] unit decrease	Illumina [7506463] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	11q22.3	ATM	rs1800057-G	0.0255	2E-10		1.65	1.41-1.92	Affymetrix [6845584] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q22.3	ATM	rs1800057-G	0.026887	3E-9		0.0420073	[0.028-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11q22.3	ATM	rs1800057-G	0.02	3E-11		1.28	[1.19-1.38]	Affymetrix, Illumina [43421991] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q22.3	ATM	rs1800057-G	0.02	8E-9		1.16	[1.10-1.22]	Illumina [20370935] (imputed)	N
1410	chr11	108143455	108143456	rs1800057	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	11q22.3	ATM	rs1800057-G	0.02	9E-9		1.38	1.23-1.53	Illumina [7437091] (imputed)	N
1410	chr11	108145072	108145074	rs139847855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q22.3	ATM	rs139847855-T	0.553654	8E-21		0.020841826	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr11	108145072	108145074	rs139847855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q22.3	ATM	rs139847855-T	0.553646	3E-29		0.024993878	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr11	108149206	108149207	rs141379009	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11q22.3	ATM	rs141379009-G	0.01997	3E-12		1.29	[1.2-1.38]	Affymetrix, Illumina [43421991] (imputed)	N
1410	chr11	108151268	108151269	rs4987982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11q22.3		rs4987982-A	0.410022	1E-8		0.019163	[0.013-0.026] unit increase	Illumina [13478928] (imputed)	N
1410	chr11	108165406	108165407	rs582297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q22.3	ATM	rs582297-G	0.5554	6E-14		0.02713982	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108165406	108165407	rs582297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q22.3	ATM	rs582297-G	0.5556	6E-9		0.02094241	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108165406	108165407	rs582297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q22.3	ATM	rs582297-G	0.5555	3E-13		0.02639203	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108175461	108175462	rs1801516	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q22.3		rs1801516-?	NR	1E-7		0.813126	[0.74-0.89]	NR [674885]	N
1410	chr11	108175461	108175462	rs1801516	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11q22.3	ATM	rs1801516-G	0.855667	4E-21				Affymetrix, Illumina [NR] (imputed)	N
1410	chr11	108175461	108175462	rs1801516	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	11q22.3	ATM	rs1801516-G	0.8557	2E-21		1.1426	NR	Affymetrix, Illumina [NR] (imputed)	N
1410	chr11	108175461	108175462	rs1801516	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11q22.3	ATM	rs1801516-G	0.848	7E-8		1.098901	[1.06-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
1410	chr11	108175461	108175462	rs1801516	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	11q22.3	ATM	rs1801516-?	0.86	3E-9		1.1363636	[NR]	Illumina [at least 560000] (imputed)	N
1410	chr11	108175461	108175462	rs1801516	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	11q22.3	ATM	rs1801516-?	0.87	3E-9		1.19	[1.12-1.27]	Illumina [594997]	N
1410	chr11	108187688	108187689	rs73008229	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	11q22.3	ATM	rs73008229-?	NR	8E-11				Affymetrix, Illumina [7850345] (imputed)	N
1410	chr11	108196895	108196896	rs56009889	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	11q22.3	ATM	rs56009889-?	NR	6E-7		3.0578122	[1.96-4.76]	Illumina [241551]	N
1410	chr11	108205564	108205565	rs4988135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q22.3	ATM, C11orf65	rs4988135-C	0.013649	6E-10		0.059016813	[0.04-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr11	108228043	108228044	rs227051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs227051-A	0.540151	9E-35				Affymetrix, Illumina [19872809] (imputed)	N
1410	chr11	108245097	108245098	rs7934935	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	11q22.3	NR	rs7934935-T	0.532001	2E-13		0.027065	[0.02-0.034] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1410	chr11	108247887	108247888	rs227080	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	11q22.3	ATM	rs227080-G	NR	7E-12		0.039	NR unit decrease	Illumina [6407959] (imputed)	N
1410	chr11	108247887	108247888	rs227080	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	11q22.3	ATM	rs227080-G	NR	2E-10	(East Asian)	0.06	NR unit decrease	Illumina [6407959] (imputed)	N
1410	chr11	108248685	108248686	rs227079	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	11q22.3	C11orf65	rs227079-A	0.48	6E-26		0.044	NR unit decrease	Illumina [9591901] (imputed)	N
1410	chr11	108248685	108248686	rs227079	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	11q22.3	C11orf65	rs227079-A	0.55	9E-31		0.014	unit increase	NR [NR]	N
1410	chr11	108248773	108248774	rs192022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q22.3	C11orf65	rs192022-G	0.455306	1E-15		0.018334998	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4529	1E-10		0.02401828	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4528	2E-9		0.02254178	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4528	1E-15		0.03043958	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4529	2E-9		0.02243228	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4528	1E-10		0.02423796	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1410	chr11	108248773	108248774	rs192022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q22.3	C11orf65	rs192022-G	0.4527	1E-10		0.02408149	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1411	chr11	108267429	108267430	rs2028155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	11q22.3	NR	rs2028155-A	0.519137	2E-16		0.03328	[0.025-0.041] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1411	chr11	108267429	108267430	rs2028155	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q22.3	CUL5, ACAT1, NPAT, ATM, KDELC2, EXPH5	rs2028155-?		4E-19				Affymetrix, Illumina [NR] (imputed)	N
1411	chr11	108271606	108271607	rs4754318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11q22.3	NR	rs4754318-G	0.51905	1E-13		0.030158	[0.022-0.038] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1411	chr11	108279200	108279201	rs4237579	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11q22.3	C11orf65	rs4237579-?	NR	3E-14		0.03278	[0.024-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1411	chr11	108282694	108282695	rs146935358	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	11q22.3	NR	rs146935358-?	NR	8E-6		0.1437	[0.082-0.206] unit decrease	Illumina [at least 560000] (imputed)	N
1411	chr11	108283160	108283161	rs11212617	21186350	Zhou K	2010-12-26	Nat Genet	Common variants near ATM are associated with glycemic response to metformin in type 2 diabetes.	Response to metformin in type 2 diabetes (glycemic)	1,024 European ancestry cases	2,896 European ancestry cases	11q22.3	ATM, C111orf65	rs11212617-C	0.44	3E-9		1.35	[1.22-1.49]	Affymetrix [705125]	N
1411	chr11	108283807	108283808	rs35244261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	11q22.3		rs35244261-C	0.526428	4E-19		0.0279165	[0.022-0.034] unit decrease	Illumina [13479135] (imputed)	N
1411	chr11	108288807	108288808	rs10431061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q22.3		rs10431061-T	NR	1E-16		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1411	chr11	108288807	108288808	rs10431061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q22.3		rs10431061-T	NR	7E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1411	chr11	108288807	108288808	rs10431061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs10431061-T	0.429197	3E-21				Affymetrix, Illumina [24649327] (imputed)	N
1411	chr11	108288807	108288808	rs10431061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs10431061-T	0.427577	1E-67				Affymetrix, Illumina [24246363] (imputed)	N
1411	chr11	108288807	108288808	rs10431061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q22.3	NR	rs10431061-T	0.413387	2E-53		0.028391	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1411	chr11	108290958	108290959	rs11212620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs11212620-G	0.424257	8E-19				Affymetrix, Illumina [23114412] (imputed)	N
1411	chr11	108290958	108290959	rs11212620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs11212620-G	0.426982	3E-56				Affymetrix, Illumina [20825802] (imputed)	N
1411	chr11	108290958	108290959	rs11212620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q22.3	NR	rs11212620-G	0.411894	4E-46		0.027922	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1411	chr11	108297407	108297408	rs7121112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q22.3	C11orf65	rs7121112-C	0.410717	3E-41		0.0299302	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr11	108297407	108297408	rs7121112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q22.3		rs7121112-?	NR	1E-42				NR [~ 8900000] (imputed)	N
1411	chr11	108300853	108300854	rs371182872	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q22.3		rs371182872-CT	0.588	8E-24		0.11	[0.09-0.14] % increase	Affymetrix [NR] (imputed)	N
1411	chr11	108300854	108300855	rs34005627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q22.3	C11orf65	rs34005627-C	0.413502	3E-16		0.018427588	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1411	chr11	108300854	108300855	rs34005627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q22.3	C11orf65	rs34005627-C	0.4135	1E-16		0.02996776	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1411	chr11	108303020	108303021	rs10890837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q22.3	C11orf65	rs10890837-C	0.153583	6E-13		0.022187276	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1411	chr11	108306235	108306236	rs10890839	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	11q22.3		rs10890839-?	NR	2E-7		1.03678	[1.02-1.05]	NR [688737]	N
1411	chr11	108309238	108309239	rs7103222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q22.3	C11orf65	rs7103222-T	0.153608	2E-12		0.022079827	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr11	108314361	108314362	rs4255510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q22.3		rs4255510-C	NR	4E-33		0.0208	[0.017-0.024] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1411	chr11	108314361	108314362	rs4255510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q22.3		rs4255510-C	NR	3E-42		0.0274	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1411	chr11	108314361	108314362	rs4255510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q22.3		rs4255510-C	NR	3E-38		0.026	[0.022-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1411	chr11	108314361	108314362	rs4255510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q22.3	C11orf65	rs4255510-C	0.408921	2E-10		0.014628768	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1411	chr11	108314361	108314362	rs4255510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs4255510-C	0.432701	2E-43				Affymetrix, Illumina [24332387] (imputed)	N
1411	chr11	108314362	108314363	rs4460776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q22.3	C11orf65	rs4460776-A	0.408924	7E-25		0.023156593	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1411	chr11	108315462	108315463	rs2118308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q22.3	NR	rs2118308-C	0.586756	1E-13				Affymetrix, Illumina [17210439] (imputed)	N
1411	chr11	108315462	108315463	rs2118308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q22.3	NR	rs2118308-C	0.589252	8E-15		0.015151	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1411	chr11	108315605	108315606	rs149934734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	11q22.3		rs149934734-T	NR	5E-17		0.3506	[0.27-0.43] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1411	chr11	108315605	108315606	rs149934734	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	11q22.3	NR	rs149934734-T	0.03	6E-8		1.45	[1.28-1.69]	Affymetrix [10308721] (imputed)	N
1411	chr11	108315605	108315606	rs149934734	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11q22.3	C11orf65, KDELC2	rs149934734-T	0.03	1E-27		1.33	[1.26-1.40]	Affymetrix, Illumina [8662096] (imputed)	N
1411	chr11	108315605	108315606	rs149934734	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11q22.3		rs149934734-T	0.0255	1E-27		0.2824	[0.23-0.33] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
1411	chr11	108315605	108315606	rs149934734	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	11q22.3	C11orf65	rs149934734-T	0.01997	3E-12		1.29	[1.2-1.38]	Affymetrix, Illumina [43421991] (imputed)	N
1411	chr11	108320093	108320094	rs147992152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11q22.3		rs147992152-G	0.493936	2E-18		0.0316588	[0.025-0.039] unit decrease	Illumina [13476266] (imputed)	N
1411	chr11	108320093	108320094	rs147992152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11q22.3		rs147992152-G	0.493775	3E-15		0.0288123	[0.022-0.036] unit decrease	Illumina [13476299] (imputed)	N
1411	chr11	108336635	108336636	rs139122788	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	11q22.3		rs139122788-T	NR	5E-7		1.1363	NR	Affymetrix [7846216] (imputed)	N
1411	chr11	108337136	108337137	rs7943607	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	11q22.3	C11orf65	rs7943607-?	NR	1E-11		0.0294	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1411	chr11	108340215	108340216	rs61913892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q22.3	NR	rs61913892-C	0.567683	2E-27		0.02016	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1411	chr11	108341863	108341864	rs7934719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q22.3	NR	rs7934719-T	0.414299	2E-21		0.017862	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1411	chr11	108341863	108341864	rs7934719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q22.3	NR	rs7934719-T	0.413488	3E-20		0.018084	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1411	chr11	108341863	108341864	rs7934719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q22.3		rs7934719-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1411	chr11	108341863	108341864	rs7934719	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q22.3	C11orf65, AP005718.1	rs7934719-T	0.4111	2E-10		0.02331543	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1411	chr11	108344080	108344081	rs7943203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q22.3	NR	rs7943203-A	0.411724	2E-33		0.023703	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1411	chr11	108344080	108344081	rs7943203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q22.3		rs7943203-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1411	chr11	108344080	108344081	rs7943203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	11q22.3	KDELC2	rs7943203-A	0.4107	2E-11		0.02422977	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1411	chr11	108344080	108344081	rs7943203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q22.3	KDELC2	rs7943203-A	0.4108	2E-17		0.03064016	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1411	chr11	108345515	108345515	rs11374964	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	11q22.3	KDELC2	rs11374964-G	0.58	4E-8		1.0638298	[1.04-1.09]	Illumina [~ 11500000] (imputed)	N
1411	chr11	108345515	108345515	rs11374964	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	11q22.3	KDELC2	rs11374964-G	0.58	4E-13		1.0638298	[1.04-1.09] (BCAC)	Illumina [~ 11500000] (imputed)	N
1411	chr11	108345515	108345515	rs11374964	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	11q22.3	KDELC2	rs11374964-G	0.57	1E-6		1.098901	[1.05-1.14]	Illumina [~ 11500000] (imputed)	N
1411	chr11	108346102	108346103	rs3824987	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	11q22.3	KDELC2	rs3824987-A	0.5928	2E-10		6.35	NR z score decrease	Affymetrix, Illumina [9950208] (imputed)	N
1411	chr11	108346102	108346103	rs3824987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q22.3	KDELC2	rs3824987-G	0.412196	2E-21		0.022111591	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr11	108346102	108346103	rs3824987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q22.3	KDELC2	rs3824987-G	0.412239	1E-40		0.030018581	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr11	108354101	108354102	rs12223381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q22.3	KDELC2	rs12223381-T	0.407301	2E-33		0.028098498	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q22.3	NR	rs74911261-A	NR	8E-9		1.153	[1.10-1.21]	Affymetrix, Illumina [29235255] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q22.3	KDELC2	rs74911261-G	0.98234375	1E-68	(KDELC2, 8296_117_3)	1.609761	[1.43-1.79] unit increase	Illumina [> 1000000] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q22.3	KDELC2	rs74911261-A	0.027	1E-69	(KDEL motif-containing protein 2, KDELC2.8296.117.3)	1.31	[1.17-1.45] unit decrease	Affymetrix [10572788] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	11q22.3	KDELC2	rs74911261-G	0.98	2E-6		1.2195122	[1.12-1.33]	Illumina [~ 11500000] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	11q22.3	KDELC2	rs74911261-G	0.98	5E-11		1.22	[1.12-1.33] (BCAC)	Illumina [~ 11500000] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	11q22.3	KDELC2	rs74911261-G	0.98	2E-6		1.3513513	[1.19-1.54]	Illumina [~ 11500000] (imputed)	N
1411	chr11	108357136	108357137	rs74911261	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	11q22.3	KDELC2	rs74911261-A	0.02	2E-10		1.41	1.27--1.57	Illumina [7437091] (imputed)	N
1411	chr11	108359160	108359161	rs4754317	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	11q22.3		rs4754317-?	NR	8E-7		0.826888	[0.75-0.9]	NR [674885]	N
1411	chr11	108359688	108359689	rs72993806	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	11q22.3		rs72993806-C	0.847	5E-15		0.0895	[0.067-0.112] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
1411	chr11	108369172	108369173	rs74822968	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDELC2	5,354 Icelandic ancestry individuals	NA	11q22.3		rs74822968-A	0.1164	4E-30		0.333092	[0.28-0.39] unit decrease	Illumina [7506463] (imputed)	N
1411	chr11	108379873	108379874	rs17618877	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.3	NR	rs17618877-?	NR	6E-7				Affymetrix [NR]	N
1412	chr11	108406942	108406943	rs117706999	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q22.3	EXPH5	rs117706999-A	0.023661	2E-10		0.048436973	[0.034-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1412	chr11	108406942	108406943	rs117706999	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q22.3	EXPH5	rs117706999-A	0.0243	1E-9		0.07265417	[0.049-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1412	chr11	108436317	108436318	rs74435620	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	11q22.3	NR	rs74435620-G		5E-6		0.2205	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
1412	chr11	108436853	108436854	rs2846407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q22.3		rs2846407-G	NR	7E-9		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1412	chr11	108436853	108436854	rs2846407	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q22.3	EXPH5	rs2846407-?		1E-8		0.0241	[0.016-0.033] unit increase	Illumina [31500000] (imputed)	N
1412	chr11	108443924	108443925	rs11212713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q22.3		rs11212713-G	NR	1E-9		0.0341	[0.023-0.045] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1412	chr11	108498884	108498885	rs10160242	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	11q22.3	intergenic	rs10160242-?		4E-6	(SI)	0.41	[0.19-0.63] unit increase	Illumina [693128]	N
1412	chr11	108510681	108510682	rs11212737	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11q22.3	Intergenic	rs11212737-?	NR	3E-7		1.4236902	[NR]	Affymetrix [492217] (imputed)	N
1413	chr11	108635654	108635655	rs12785439	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	11q22.3		rs12785439-T	0.233328023659925	6E-7	(EA)	0.0285303	[0.017-0.04] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1414	chr11	108773908	108773909	rs73011405	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DDX10	rs73011405-?	NR	5E-11		2.67078	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1414	chr11	108773908	108773909	rs73011405	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DDX10	rs73011405-?	NR	4E-8	(male)	2.45527	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1415	chr11	108859012	108859013	rs186067748	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q22.3	NR	rs186067748-A	0.0122	2E-8	(CTSS)	0.01304	NR unit increase	Illumina [1671387] (imputed)	N
1415	chr11	108873118	108873119	rs10890920	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	11q22.3	SKCG-1	rs10890920-A	0.57	3E-6	(Sulfonylurea Hypoglycemic agents)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1415	chr11	108873253	108873254	rs192588356	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	11q22.3		rs192588356-T	0.0022	2E-8		3.352	[2.147-5.234]	Affymetrix [7842171] (imputed)	N
1415	chr11	108893366	108893367	rs7101378	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q22.3	NR	rs7101378-G	0.531881765256125	7E-6	(IGP29)	0.1398	[0.079-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
1415	chr11	108908880	108908881	rs11604258	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	11q22.3	NR	rs11604258-?	NR	2E-7			[NR]	Illumina [5779266] (imputed)	N
1416	chr11	109019017	109019018	rs115381894	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.3	DDX10, C11orf87	rs115381894-G		9E-6	(AA)	4.774	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1416	chr11	109019017	109019018	rs115381894	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q22.3	DDX10, C11orf87	rs115381894-G		9E-6		4.774	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1416	chr11	109019017	109019018	rs115381894	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q22.3	DDX10, C11orf87	rs115381894-G		4E-8		5.212	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1416	chr11	109023259	109023260	rs9783397	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	11q22.3	DDX10, C11orf87	rs9783397-T	0.71	7E-7		1.83	[1.44-2.32]	Illumina [8300000] (imputed)	N
1416	chr11	109028796	109028797	rs884444	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q22.3	Intergenic	rs884444-?		9E-7		1.0309278	[1.02-1.04]	Illumina [7645193] (imputed)	N
1416	chr11	109028796	109028797	rs884444	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q22.3	Intergenic	rs884444-?		7E-6		1.0869565	[1.05-1.14]	Illumina [7645193] (imputed)	N
1416	chr11	109035995	109035996	rs17109239	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q22.3	NR	rs17109239-?	NR	3E-6				Affymetrix [NR]	N
1417	chr11	109088862	109088863	rs188620244	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11q22.3	NR	rs188620244-G	NR	5E-7	(GEE model)	1.0576	[0.65-1.47] unit increase	NR [NR] (imputed)	N
1417	chr11	109116893	109116894	rs117368811	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q22.3	intergenic	rs117368811-C	0.0406754234348987	2E-6	(G_unclassified_K_Bacteria_HB)	0.747251	[0.44-1.06] unit decrease	Illumina [7711310] (imputed)	N
1418	chr11	109289537	109289538	rs2212430	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11q22.3	NR	rs2212430-C	0.32008	3E-8		0.041835632	[0.027-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1418	chr11	109289537	109289538	rs2212430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q22.3		rs2212430-T	0.3038	1E-10		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1418	chr11	109289537	109289538	rs2212430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q22.3	Intergenic	rs2212430-T	0.3038	3E-10	(MTAG)	0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11q22.3	NR	rs12421382-?		6E-9				NR [8377093]	N
1419	chr11	109378070	109378071	rs12421382	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q22.3	NR	rs12421382-?	NR	2E-8		1.0530639	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q22.3	ENSG00000255028	rs12421382-?	NR	3E-8		0.011863449	[0.0077-0.0161] unit increase	NR [7306098]	N
1419	chr11	109378070	109378071	rs12421382	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q22.3	C11orf87	rs12421382-C	NR	2E-8	(EA)	1.0672358	[1.04-1.09]	Illumina [6627481] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q22.3	C11orf87	rs12421382-C	NR	2E-8		1.0570824	[1.04-1.08]	Illumina [6627481] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11q22.3	C11orf87	rs12421382-?	NR	7E-6				Illumina [8000000] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q22.3	C11orf87	rs12421382-C	NR	2E-8		1.0582011	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q22.3	NR	rs12421382-C	NR	4E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1419	chr11	109378070	109378071	rs12421382	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q22.3	C11orf87	rs12421382-C	0.666	4E-8		1.0626993	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
1420	chr11	109479508	109479509	rs56284045	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q22.3	Intergenic	rs56284045-A	0.0795	6E-9	(MTAG)	0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1420	chr11	109555837	109555838	rs3858402	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11q22.3	NR	rs3858402-?		9E-9				NR [8377093]	N
1420	chr11	109555837	109555838	rs3858402	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q22.3	NR	rs3858402-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
1420	chr11	109555837	109555838	rs3858402	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q22.3	CCT6P5	rs3858402-G	NR	9E-8	(EA)	1.064	[1.04-1.09]	Illumina [6627481] (imputed)	N
1421	chr11	109636726	109636727	rs2716036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q22.3	Intergenic	rs2716036-T	0.0812	1E-9	(MTAG)	0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1421	chr11	109636726	109636727	rs2716036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q22.3	Intergenic	rs2716036-G	0.9188	1E-8		0.0204	[0.013-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1423	chr11	109855880	109855881	rs141001422	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	11q22.3	NR	rs141001422-?	NR	3E-7				Affymetrix [28509962] (imputed)	N
1423	chr11	109928913	109928914	rs144471255	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q22.3	Intergenic	rs144471255-A	0.018	3E-6	(liability model)	0.31	[0.17-0.45] unit increase	NR [19725427] (imputed)	N
1423	chr11	109932068	109932069	rs17110679	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q22.3	NR	rs17110679-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
1423	chr11	109935552	109935553	rs12419121	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	11q22.3	RDX	rs12419121-?	NR	4E-6				Illumina [540916] (imputed)	N
1423	chr11	109956345	109956346	rs7115956	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q22.3	ZC3H12C	rs7115956-?	NR	8E-12	(subset analysis)			Illumina [130052]	N
1423	chr11	109959637	109959638	rs1648153	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	11q22.3	NR	rs1648153-G		3E-10		1.07		NR [8016731] (imputed)	N
1423	chr11	109962431	109962432	rs4561177	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs4561177-A	NR	4E-10		1.07	NR	NR [8016731] (imputed)	N
1423	chr11	109962431	109962432	rs4561177	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA		ZC3H12C	rs4561177-?	NR	1E-9	(subset analysis)			Illumina [130052]	N
1423	chr11	109962431	109962432	rs4561177	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls		ZC3H12C	rs4561177-A	NR	9E-9		1.139	NR	Illumina [up to 11532644] (imputed)	N
1423	chr11	109962431	109962432	rs4561177	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA		ZC3H12C	rs4561177-A	0.581	8E-13		1.14		Illumina [111236] (imputed)	N
1423	chr11	109963744	109963745	rs4356188	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q22.3	ZC3H12C	rs4356188-C	0.299146	4E-14		0.0157423	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1423	chr11	109963744	109963745	rs4356188	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q22.3	ZC3H12C	rs4356188-C	0.299205	2E-17		0.0181862	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1424	chr11	109979944	109979945	rs10789752	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q22.3	NR	rs10789752-T	NR	3E-9		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1424	chr11	109995943	109995944	rs746463	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	11q22.3	ZC3H12C	rs746463-T	NR	2E-13		0.015222964	[0.011-0.019] unit decrease	Illumina [242289]	N
1424	chr11	109995943	109995944	rs746463	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	11q22.3	NR	rs746463-T	0.68	2E-8		0.018	unit decrease	Illumina [242289]	N
1424	chr11	109995943	109995944	rs746463	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Exercise treadmill test traits	Up to 1,238 European ancestry individuals	NA	11q22.3	intergenic	rs746463-?	NR	5E-6	(P3MRSBP)			Affymetrix [70897]	N
1424	chr11	110010025	110010026	rs611339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q22.3		rs611339-T	NR	5E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1424	chr11	110012142	110012143	rs689183	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q22.3	ZC3H12C	rs689183-T	0.7461	4E-9		0.0182	[0.012-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1424	chr11	110016518	110016519	rs661171	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	11q22.3	ZC3H12C	rs661171-?	NR	3E-8				NR [1800000]	N
1424	chr11	110016518	110016519	rs661171	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	11q22.3	ZC3H12C	rs661171-G	0.71	9E-7	(female)	0.2	[0.12-0.28] unit increase	Illumina [7411206] (imputed)	N
1424	chr11	110024301	110024302	rs754621889	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q22.3	ZC3H12C	rs754621889-T	0.0026	4E-6		0.4841	[0.28-0.69] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1426	chr11	110237457	110237458	rs17728834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q22.3		rs17728834-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1426	chr11	110237537	110237538	rs75112503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs75112503-T	0.388048769	9E-9		0.07045119	[0.046-0.095] unit increase	Illumina [13427711] (imputed)	N
1426	chr11	110237537	110237538	rs75112503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs75112503-T	NR	5E-12		0.0816	[0.058-0.105] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1426	chr11	110237537	110237538	rs75112503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs75112503-T	0.388048769	6E-12		0.095029704	[0.068-0.122] unit increase	Illumina [13427135] (imputed)	N
1426	chr11	110237537	110237538	rs75112503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	11q22.3		rs75112503-T	NR	6E-9		0.0451	[0.03-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1426	chr11	110237537	110237538	rs75112503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	11q22.3		rs75112503-T	NR	2E-8		0.0397	[0.026-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1426	chr11	110243921	110243922	rs7945071	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	11q22.3	RDX, FDX1	rs7945071-T	0.172	7E-6	(RAVLT)	3.012	[1.71-4.31] unit increase	Affymetrix [> 371951] (imputed)	N
1426	chr11	110244227	110244228	rs1443120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q22.3		rs1443120-G	NR	5E-9		0.058	[0.039-0.077] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1426	chr11	110244227	110244228	rs1443120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	11q22.3		rs1443120-G	NR	2E-9		0.0682	[0.046-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1426	chr11	110244227	110244228	rs1443120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	11q22.3		rs1443120-G	0.409950723	1E-9		0.07431584	[0.05-0.098] unit increase	Illumina [13429980] (imputed)	N
1426	chr11	110244227	110244228	rs1443120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	11q22.3		rs1443120-G	0.409950723	2E-8		0.04820015	[0.031-0.065] unit increase	Illumina [13429980] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q22.3	AK094117, AK124179	rs10488763-A	0.741085	7E-82	(3beta-hydroxy-5-cholestenoate)	0.515	[0.46-0.57] unit increase	Illumina [13039987] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q22.3	AK094117, AK124179	rs10488763-A	0.741085	3E-32	(glycocholenate sulfate*)	0.315	[0.26-0.37] unit increase	Illumina [13039987] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q22.3	AK094117, AK124179	rs10488763-A	0.741085	2E-11	(taurocholenate sulfate)	0.18	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q22.3	AK094117, AK124179	rs10488763-A	0.741085	2E-11	(taurocholenate sulfate)	0.18	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q22.3	LOC105369486	rs10488763-?	NR	3E-19		0.0565916	[0.044-0.069] unit increase	Illumina [4804024] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	11q22.3	LOC105369486	rs10488763-?	NR	2E-15		0.0793168	[0.06-0.099] unit increase	Illumina [19707525] (imputed)	N
1426	chr11	110244359	110244360	rs10488763	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11q22.3	RDX, FDX1	rs10488763-T	0.18	9E-10		1.06	[1.02-1.11]	Illumina [5167567] (imputed)	N
1426	chr11	110246609	110246610	rs2724416	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q22.3	RDX	rs2724416-T	NR	2E-6		1.0577533	NR	Affymetrix, Illumina [8278136] (imputed)	N
1426	chr11	110272260	110272261	rs73562014	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q22.3	intergenic	rs73562014-A	0.1308	1E-6		0.0458	[0.027-0.064] unit decrease	NR [8041861] (imputed)	N
1426	chr11	110338331	110338332	rs202228270	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q22.3	FDX1, ARHGAP20	rs202228270-CT	0.780261	8E-12	(glycocholenate sulfate*)	0.207	[0.15-0.27] unit decrease	Illumina [13039987] (imputed)	N
1426	chr11	110348042	110348043	rs11213425	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q22.3	FDX1, ARHGAP20	rs11213425-T	0.744903	5E-15	(3b-hydroxy-5-cholenoic acid)	0.204	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
1426	chr11	110358464	110358465	rs1848599	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	11q22.3	FDX1, ARHGAP20	rs1848599-C	0.78	4E-8		1.14	[1.09-1.19]	Illumina [5932413] (imputed)	N
1427	chr11	110363468	110363469	rs4754462	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q22.3	ARHGAP20	rs4754462-?	NR	9E-6	(lactate)	0.16850542	[0.094-0.243] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1427	chr11	110395206	110395207	rs12294479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q22.3		rs12294479-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1427	chr11	110395857	110395858	rs12785341	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	11q22.3	ARHGAP20	rs12785341-C	0.09	8E-6		0.29	[0.16-0.42] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr11	110435635	110435636	rs11213482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q22.3		rs11213482-A	0.836	3E-8		0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1427	chr11	110465050	110465051	rs57999988	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q22.3	ARHGAP20	rs57999988-C	0.916	4E-8		0.125	[0.08-0.17] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1428	chr11	110499252	110499253	rs326946	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		11q23.1	ARHGAP20	rs326946-?	0.17	7E-7		0.16	unit decrease	Illumina [NR] (imputed)	N
1428	chr11	110515805	110515806	rs781331541	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	11q23.1	ARHGAP20	rs781331541-T	0.0012	4E-6		1.7953	[1.03-2.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1428	chr11	110557861	110557862	rs35391917	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	11q23.1	ARHGAP20	rs35391917-A	0.839051	4E-8				Affymetrix, Illumina [NR] (imputed)	N
1428	chr11	110587290	110587291	rs7932983	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q23.1	ARHGAP20, C11orf53	rs7932983-A	0.9276	2E-8		0.1488	[0.096-0.202] unit increase	Affymetrix [~ 11900000] (imputed)	N
1429	chr11	110697304	110697305	rs120434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.1		rs120434-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1429	chr11	110703406	110703407	rs7125147	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		ARHGAP20	rs7125147-T	0.27	7E-6				Illumina [1679420] (imputed)	N
1429	chr11	110741013	110741014	rs1469170	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	11q23.1	NR	rs1469170-A	NR	8E-8		1.2	[1.12-1.29]	Illumina [1300000] (imputed)	N
1430	chr11	110885527	110885528	rs7942875	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q23.1		rs7942875-T	0.3079	2E-7		0.038278	[0.024-0.053] unit increase	Affymetrix [15580782] (imputed)	N
1431	chr11	110894701	110894702	rs10502124	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11q23.1		rs10502124-A	0.62344	2E-12		0.048533	[0.035-0.062] unit increase	Affymetrix [15580782] (imputed)	N
1431	chr11	110894701	110894702	rs10502124	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q23.1		rs10502124-A	0.62344	1E-15		0.056384	[0.043-0.07] unit increase	Affymetrix [15580782] (imputed)	N
1431	chr11	110913239	110913240	rs4938174	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	11q23.1		rs4938174-G	0.711702	7E-9		0.0542715	[0.034-0.074] decrease	Affymetrix [11014269] (imputed)	N
1431	chr11	110913239	110913240	rs4938174	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	11q23.1	ARHGAP20 - C11orf53	rs4938174-?	NA	4E-16		2.2	[1.67-2.73] unit decrease	Affymetrix [5541230] (imputed)	N
1431	chr11	110913239	110913240	rs4938174	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	11q23.1	ARHGAP20	rs4938174-?	NR	2E-8		0.123	[0.08-0.16] unit increase	Illumina [NR]	N
1431	chr11	110913239	110913240	rs4938174	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	11q23.1	ARHGAP20, C11orf53	rs4938174-A	0.26	4E-10		2.26	[1.55-2.97] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1431	chr11	110913239	110913240	rs4938174	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	11q23.1	ARHGAP20, POU2AF1	rs4938174-A	0.31	4E-9		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1431	chr11	110946372	110946372	rs11418777	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	11q23.1		rs11418777-?	NR	2E-19				NR [9705931] (imputed)	N
1431	chr11	110946372	110946372	rs11418777	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs11418777-?	NR	6E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
1431	chr11	110949401	110949402	rs321403	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	11q23.1	C11orf53	rs321403-?		1E-11	(Insula)			Affymetrix, Illumina [NR] (imputed)	N
1431	chr11	110949617	110949618	rs321404	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs321404-?	NR	7E-10	(right insula)			NR [9227495] (imputed)	N
1431	chr11	110950385	110950386	rs111321694	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q23.1		rs111321694-T	0.1828	7E-7		34.211643	z score increase	NR [6814003]	N
1431	chr11	110950385	110950386	rs111321694	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	11q23.1	NR	rs111321694-T	0.1672	4E-8		0.016306944	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1431	chr11	110951049	110951050	rs321406	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q23.1	FBXL7	rs321406-?		1E-12				NR [7428630] (imputed)	N
1431	chr11	110951049	110951050	rs321406	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q23.1	POU2AF1, RP11-794P6.2, BTG4, C11orf88, SIK2, PPP2R1B, ALG9, DIXDC1, DLAT, PIH1D2, SDHD	rs321406-?		4E-13				NR [7428630] (imputed)	N
1431	chr11	110951049	110951050	rs321406	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs321406-?	NR	5E-10	(left insula)			NR [9227495] (imputed)	N
1431	chr11	110951414	110951415	rs11213729	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs11213729-?	NR	5E-8	(left parahippocampal)			NR [9227495] (imputed)	N
1431	chr11	110957334	110957335	rs17536059	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.1		rs17536059-C	0.1721	6E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1431	chr11	110957334	110957335	rs17536059	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.1	Intergenic	rs17536059-C	0.1721	2E-9	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1431	chr11	110962055	110962056	rs7123402	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q23.1	NR	rs7123402-A	0.6904	4E-11	(Fusiform)	12.92723	[9.09-16.76] unit decrease	Affymetrix, Illumina [NR]	N
1431	chr11	110962734	110962735	rs574760	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	11q23.1		rs574760-T	0.31	1E-7				NR [13131314] (imputed)	N
1431	chr11	110962734	110962735	rs574760	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q23.1		rs574760-T	0.31	2E-121		23.44	z score increase	Affymetrix [9061022] (imputed)	N
1431	chr11	110962879	110962880	rs167684	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	11q23.1		rs167684-G	0.31	8E-6				NR [13131314] (imputed)	N
1431	chr11	110962879	110962880	rs167684	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q23.1		rs167684-G	0.31	2E-54		15.53	z score increase	Affymetrix [9061022] (imputed)	N
1431	chr11	110962879	110962880	rs167684	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q23.1	NR	rs167684-G	0.3131	1E-17				NR [9056863] (imputed)	N
1431	chr11	110962879	110962880	rs167684	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals		11q23.1	RP11-89C3.4	rs167684-G	0.3135	1E-12		0.0623451	[0.045-0.08] unit decrease	Affymetrix [8165723] (imputed)	N
1431	chr11	110962879	110962880	rs167684	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	11q23.1	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs167684-?		9E-9				NR [7428630] (imputed)	N
1431	chr11	110962879	110962880	rs167684	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	11q23.1	EPHA4	rs167684-?		3E-8				NR [7428630] (imputed)	N
1431	chr11	110995970	110995971	rs321358	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.1	C11orf53	rs321358-G	0.155	6E-6	(EA, men)	0.026	[0.014-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1432	chr11	111025038	111025039	rs34077344	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs34077344-?	NR	2E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
1432	chr11	111050525	111050526	rs59614433	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q23.1		rs59614433-C	0.09	2E-47		14.48	z score increase	Affymetrix [9061022] (imputed)	N
1432	chr11	111050525	111050526	rs59614433	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q23.1	NR	rs59614433-C	0.0813	1E-17				NR [9056863] (imputed)	N
1432	chr11	111050525	111050526	rs59614433	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	11q23.1		rs59614433-?	NR	4E-14				NR [9705931] (imputed)	N
1432	chr11	111050525	111050526	rs59614433	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q23.1	NR	rs59614433-T	0.9159	2E-9	(Pars Triangularis)	9.964195	[6.72-13.21] unit decrease	Affymetrix, Illumina [NR]	N
1432	chr11	111051350	111051351	rs2084308	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	11q23.1	intergenic	rs2084308-T	0.028	4E-7		0.0967	NR unit increase	NR [NR] (imputed)	N
1432	chr11	111055660	111055661	rs12794347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	11q23.1	TSC22D2	rs12794347-?		2E-9				NR [7428630] (imputed)	N
1432	chr11	111055660	111055661	rs12794347	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q23.1	NR	rs12794347-A	0.0839	1E-8	(Middle Temporal)	19.397556	[12.69-26.11] unit decrease	Affymetrix, Illumina [NR]	N
1432	chr11	111056157	111056158	rs58066679	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q23.1	NR	rs58066679-A	0.0845	9E-11	(Insula)	13.715999	[9.57-17.86] unit increase	Affymetrix, Illumina [NR]	N
1432	chr11	111064722	111064723	rs10736455	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	11q23.1	intergenic	rs10736455-A	NR	4E-6		0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1432	chr11	111066553	111066554	rs61900578	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs61900578-?	NR	1E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
1432	chr11	111072778	111072779	rs949279	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	11q23.1	NR	rs949279-A	0.3245	4E-9	(Fusiform)	11.352868	[7.57-15.14] unit decrease	Affymetrix, Illumina [NR]	N
1432	chr11	111072778	111072779	rs949279	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs949279-?	NR	2E-9	(left insula)			NR [9227495] (imputed)	N
1432	chr11	111072778	111072779	rs949279	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.1	NR	rs949279-?	NR	1E-8	(right insula)			NR [9227495] (imputed)	N
1432	chr11	111077724	111077725	rs7936534	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	11q23.1	ARHGAP20, C11orf53	rs7936534-A	0.67	3E-8		5.54	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1432	chr11	111092985	111092986	rs190217029	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	11q23.1	C11orf53	rs190217029-G	NR	4E-6		0.11394801	[0.066-0.162] unit increase	Affymetrix [9576485] (imputed)	N
1432	chr11	111111728	111111729	rs7952641	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	11q23.1	NR	rs7952641-?	NR	8E-7		1.78	[1.6-1.98]	Illumina [539000] (imputed)	N
1433	chr11	111154071	111154072	rs7130173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	11q23.1		rs7130173-C	NR	1E-12		0.0931	[0.067-0.119] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1433	chr11	111154071	111154072	rs7130173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	11q23.1		rs7130173-C	NR	4E-23		0.0992	[0.08-0.119] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1433	chr11	111156835	111156836	rs3087967	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	11q23.1		rs3087967-T	NR	3E-8		1.1994	NR	Affymetrix [7846216] (imputed)	N
1433	chr11	111156835	111156836	rs3087967	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	11q23.1	NR	rs3087967-T	NR	6E-33		1.15	[1.12-1.18]	Affymetrix, Illumina [> 10000000] (imputed)	N
1433	chr11	111156835	111156836	rs3087967	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	11q23.1	c11orf53, COLCA1, COLCA2	rs3087967-T	0.2911	2E-31		1.12	[1.10-1.14]	Affymetrix, Illumina [16900397] (imputed)	N
1433	chr11	111166503	111166504	rs12296076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PYY	5,365 Icelandic ancestry individuals	NA	11q23.1		rs12296076-G	0.3613	5E-12		0.135863	[0.097-0.174] unit increase	Illumina [7506463] (imputed)	N
1433	chr11	111168543	111168544	rs45583336	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		COLCA1	rs45583336-?	NR	5E-6		1.3	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	11q23.1	COLCA2	rs3802842-C	NR	3E-7	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	11q23.1	COLCA2	rs3802842-C	0.39	5E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	11q23.1	NR	rs3802842-C	0.269	5E-19	(EA)	1.1235955	[1.1-1.15]	Affymetrix, Illumina [12931465] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	11q23.1	NR	rs3802842-C	0.38	3E-7		1.09	[1.05-1.12]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	11q23.1	C11orf93	rs3802842-C	0.28	1E-10		1.1235955	[1.09-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	11q23.1	FLJ45803	rs3802842-C	0.27	2E-6		1.13	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	11q23.1	intergenic	rs3802842-C	0.38	3E-7	(East Asian)	1.09	[1.05-1.12]	Affymetrix, Illumina [2400000] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	11q23.1	intergenic	rs3802842-?	0.29	4E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [2708280] (imputed)	N
1433	chr11	111171708	111171709	rs3802842	21761138	Peters U	2011-07-15	Hum Genet	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	11q23.1	LOC120376	rs3802842-?	0.28	4E-7		1.14	[1.08-1.20]	Illumina [378739]	N
1433	chr11	111171708	111171709	rs3802842	18372901	Tenesa A	2008-03-30	Nat Genet	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 cases, 1,771 controls	11q23.1	intergenic	rs3802842-C	0.43	6E-10		1.11	[1.08-1.15]	Illumina [541628]	N
1433	chr11	111172178	111172179	rs4608113	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.1	C11orf53	rs4608113-?	NR	2E-6	(tauro deoxycholate)	0.19799271	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1433	chr11	111172910	111172911	rs6589219	28960316	Tanskanen T	2017-09-28	Int J Cancer	Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.	Colorectal cancer	1,701 Finnish ancestry cases, 14,082 Finnish ancestry controls	11,647 European ancestry cases, 12,356 European ancestry controls	11q23.1	COLCA1, COLCA2	rs6589219-G	NR	2E-9		1.12	[1.08-1.17]	Illumina [9068015] (imputed)	N
1433	chr11	111196857	111196858	rs7104791	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	11q23.1	intergenic	rs7104791-T		8E-10		1.1429985		Illumina [252970]	N
1433	chr11	111196857	111196858	rs7104791	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	11q23.1	POU2AF1, C11orf93	rs7104791-?	0.209	2E-11		1.16		Illumina [139553]	N
1433	chr11	111196936	111196937	rs10891256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q23.1		rs10891256-T	NR	7E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1433	chr11	111196936	111196937	rs10891256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q23.1		rs10891256-T	NR	4E-10		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1433	chr11	111196936	111196937	rs10891256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q23.1		rs10891256-T	0.4951	5E-14		0.016636705	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1433	chr11	111202431	111202432	rs4512889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q23.1		rs4512889-A	NR	6E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1433	chr11	111202477	111202478	rs1893989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q23.1		rs1893989-G	0.513307	7E-14		0.01653192	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1433	chr11	111203992	111203993	rs2003313	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	11q23.1	POU2AF1	rs2003313-T	0.448	1E-9		0.073	[0.049-0.097] mmol/L decrease	Illumina [1990000] (imputed)	N
1433	chr11	111207104	111207105	rs7931938	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11q23.1	MIR4491	rs7931938-A	0.3915	2E-8		0.0042	[0.0028-0.0056] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1433	chr11	111208517	111208518	rs1893993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs1893993-C	0.392051	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
1433	chr11	111208517	111208518	rs1893993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q23.1	NR	rs1893993-C	0.462412	9E-16		0.014891	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1433	chr11	111208517	111208518	rs1893993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q23.1	NR	rs1893993-C	0.462224	5E-17		0.015507	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1433	chr11	111215250	111215251	rs7113329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q23.1	MIR4491	rs7113329-G	0.463183	1E-13		0.01643787	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1433	chr11	111215663	111215664	rs7117229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs7117229-A	0.392206	9E-17				Affymetrix, Illumina [24653286] (imputed)	N
1433	chr11	111215663	111215664	rs7117229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q23.1	NR	rs7117229-A	0.461902	3E-19		0.01656	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1433	chr11	111215663	111215664	rs7117229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs7117229-A	0.394417	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
1433	chr11	111220293	111220294	rs12803281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q23.1		rs12803281-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1433	chr11	111223110	111223111	rs1042752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q23.1		rs1042752-G	NR	7E-14		0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1433	chr11	111223444	111223445	rs12417556	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Urine pH measurement	149,899 Icelandic ancestry individuals (includes non-array genotyped, whole-genome imputed individuals)	NA	11q23.1	POU2AF1	rs12417556-A	0.46747	4E-11		0.02	[0.02-0.03] unit decrease	Illumina [32500000] (imputed)	N
1433	chr11	111223444	111223445	rs12417556	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Low urine pH	35,897 Icelandic ancestry cases, 112,302 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	11q23.1	POU2AF1	rs12417556-A	0.4675	2E-14		1.086	[1.06-1.11]	Illumina [32500000] (imputed)	N
1433	chr11	111239364	111239365	rs12419634	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q23.1		rs12419634-C	NR	1E-13		0.147987	[0.11-0.19] unit increase	NR [2787054] (imputed)	N
1433	chr11	111239364	111239365	rs12419634	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	11q23.1		rs12419634-G	NR	8E-9		0.128326	[0.085-0.172] unit decrease	NR [5054572] (imputed)	N
1433	chr11	111243101	111243102	rs4529910	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	11q23.1	POU2AF	rs4529910-T	0.27	4E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1433	chr11	111246142	111246143	rs34880462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q23.1		rs34880462-A	NR	3E-9		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1433	chr11	111247741	111247742	rs45484195	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11q23.1		rs45484195-?	NR	7E-6		0.4595924	[0.26-0.66] unit decrease	Illumina [9842460] (imputed)	N
1433	chr11	111247942	111247944	rs142874124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q23.1		rs142874124-C	NR	2E-25		0.0285	[0.023-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1433	chr11	111247942	111247944	rs142874124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q23.1	POU2AF1	rs142874124-C	0.69477	7E-9		0.013948387	[0.0092-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1433	chr11	111249456	111249457	rs6589229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q23.1		rs6589229-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1433	chr11	111249610	111249611	rs7111520	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	11q23.1	POU2AF1	rs7111520-A	0.7	1E-11		1.19	[1.13-1.25]	Illumina [> 10000000] (imputed)	N
1433	chr11	111249818	111249819	rs10789825	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.1	POU2AF1	rs10789825-G	NR	2E-6		1.0608	NR	Affymetrix, Illumina [8278136] (imputed)	N
1433	chr11	111257067	111257068	rs12293898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q23.1	POU2AF1	rs12293898-C	0.763304	2E-12		0.018368425	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1433	chr11	111257067	111257068	rs12293898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q23.1	POU2AF1	rs12293898-C	0.763342	2E-10		0.016499598	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1433	chr11	111257067	111257068	rs12293898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs12293898-C	0.700893	5E-12				Affymetrix, Illumina [19872809] (imputed)	N
1433	chr11	111275132	111275133	rs4938534	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q23.1		rs4938534-G	NR	3E-10		0.246738	[0.17-0.32] unit decrease	NR [5275424] (imputed)	N
1433	chr11	111275132	111275133	rs4938534	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	11q23.1	POU2AF1	rs4938534-A	0.447631754503002	1E-8		1.3504277	[1.217-1.498]	Affymetrix [425290]	N
1433	chr11	111275132	111275133	rs4938534	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	11q23.1	POU2AF1	rs4938534-A	0.44	2E-8		1.39	[1.24-1.56]	Affymetrix [421245]	N
1433	chr11	111276084	111276085	rs10891261	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.1	POU2AF1	rs10891261-C	NR	6E-8		1.0670081	NR	Affymetrix, Illumina [8278136] (imputed)	N
1434	chr11	111300781	111300782	rs4936453	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	11q23.1		rs4936453-?	NR	8E-6	(clearcell)	1.54		Illumina [11595112] (imputed)	N
1434	chr11	111320093	111320094	rs34275187	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11q23.1	POU2AF1	rs34275187-G	0.125388816915658	4E-6		0.0037769	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1434	chr11	111344683	111344684	rs181464357	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	11q23.1	NR	rs181464357-T		9E-6		0.3674	[0.2-0.53] SD units increase	NR [10700000] (imputed)	N
1434	chr11	111346464	111346465	rs11213921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	BTG4	rs11213921-T	NR	1E-8		0.0237108	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
1434	chr11	111384425	111384426	rs28690953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	MIR34C	rs28690953-G	NR	3E-8		0.0220963	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
1434	chr11	111384425	111384426	rs28690953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs28690953-G	0.139905	1E-12				Affymetrix, Illumina [24246363] (imputed)	N
1434	chr11	111390761	111390762	rs503905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.1		rs503905-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1435	chr11	111411607	111411608	rs11213935	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.1	LAYN	rs11213935-A	0.078	4E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1435	chr11	111413464	111413465	rs4938784	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	11q23.1	BTG4, MIR34B, MIR34C, C11orf88, LAYN	rs4938784-T	0.321	3E-6		1.05823	[1.03-1.08]	NR [9372253] (imputed)	N
1435	chr11	111433926	111433927	rs11213940	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	11q23.1	NR	rs11213940-C	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1435	chr11	111434093	111434094	rs11213941	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q23.1	NR	rs11213941-T	0.7096	3E-18		1.0538518	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1435	chr11	111434093	111434094	rs11213941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q23.1		rs11213941-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1435	chr11	111436895	111436896	rs659529	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	11q23.1		rs659529-?	NR	5E-10		1.07	[1.05-1.1]	Illumina [5170515] (imputed)	N
1435	chr11	111436895	111436896	rs659529	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	11q23.1	ALG9, BTG4, C11orf1, C11orf88, FDXACB1, LAYN, MIR34B, MIR34C, PPP2R1B, SIK2	rs659529-?	NR	6E-11		1.0526316		NR [74888535] (imputed)	N
1435	chr11	111436895	111436896	rs659529	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	11q23.1	BTG4, C11orf88, LAYN, MIR34B, MIR34C, PPP2R1B, SIK2	rs659529-?	NR	1E-10		1.0752687	[1.05-1.1]	Affymetrix [74888535] (imputed)	N
1435	chr11	111440864	111440865	rs4616071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	11q23.1	NR	rs4616071-C	NR	1E-6				Affymetrix [~ 8270000] (imputed)	N
1435	chr11	111440864	111440865	rs4616071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	11q23.1	NR	rs4616071-C	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1435	chr11	111440864	111440865	rs4616071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q23.1	NR	rs4616071-C	0.7315	2E-14		1.0529641	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1435	chr11	111455941	111455942	rs34634095	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11q23.1	LAYN, SIK2, PPP2R1B, ALG9	rs34634095-?	NR	3E-9		0.0159467	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1435	chr11	111456104	111456105	rs1613778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11q23.1		rs1613778-C	NR	3E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1435	chr11	111461293	111461294	rs75456019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.1		rs75456019-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1435	chr11	111464144	111464145	rs74665267	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q23.1	SIK2	rs74665267-?	NR	3E-8		0.0339	[0.023-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
1435	chr11	111469581	111469582	rs10789841	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	11q23.1	NR	rs10789841-T	0.73	2E-8		0.57	[0.37-0.77] unit increase	Affymetrix [39302896] (imputed)	N
1435	chr11	111470566	111470567	rs7130753	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q23.1	LAYN, SIK2	rs7130753-C	0.69	7E-15		1.045	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1435	chr11	111471391	111471392	rs542831	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	11q23.1	SIK2	rs542831-T	0.2878	5E-13				Affymetrix [15688218] (imputed)	N
1435	chr11	111472391	111472392	rs1784776	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q23.1	SIK2	rs1784776-T	0.7	2E-9				NR [> 9500000] (imputed)	N
1435	chr11	111472459	111472460	rs1784775	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	11q23.1	LAYN, SIK2	rs1784775-C	0.708	6E-9		1.044	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1435	chr11	111472459	111472460	rs1784775	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q23.1	LAYN, SIK2	rs1784775-C	NR	2E-9		1.046	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1435	chr11	111474115	111474116	rs1789358	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11q23.1	SIK2	rs1789358-A	0.711633176219792	2E-8		0.04049311	[0.026-0.055] unit increase	Affymetrix [35186738] (imputed)	N
1435	chr11	111477324	111477325	rs539524	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q23.1	SIK2	rs539524-G	0.696644	1E-10		1.0436375	[1.03020973121752-1.05724037162945]	NR [9572556] (imputed)	N
1435	chr11	111491321	111491322	rs11828343	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	11q23.1	NR	rs11828343-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1435	chr11	111491321	111491322	rs11828343	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q23.1	PPP2R1B, SIK2	rs11828343-A	0.716862	2E-8		1.0381916	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
1435	chr11	111505879	111505880	rs12791699	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11q23.1	LAYN, SIK2, PPP2R1B, ALG9	rs12791699-?	NR	9E-9		0.00158758	[-0.00375-0.00692] unit increase	Affymetrix [25921788] (imputed)	N
1435	chr11	111505879	111505880	rs12791699	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11q23.1	LAYN, SIK2, PPP2R1B, ALG9	rs12791699-?	NR	9E-9		0.0155738	[0.01-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1435	chr11	111507188	111507189	rs505372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	11q23.1		rs505372-C	NR	2E-8		0.0496	[0.032-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1435	chr11	111507188	111507189	rs505372	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q23.1	NR	rs505372-C	0.7201	3E-6	(EA)	0.0322	[0.019-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
1435	chr11	111515058	111515059	rs17473411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q23.1		rs17473411-C	NR	8E-11		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1435	chr11	111517907	111517908	rs487985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q23.1	Intergenic	rs487985-G	0.2913	1E-8		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1435	chr11	111532690	111532691	rs10891286	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	11q23.1	NR	rs10891286-C	0.323062	5E-10		0.04670235	[0.032-0.061] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1435	chr11	111535101	111535102	rs11608149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.1		rs11608149-A	0.2707	4E-10	(conditional-joint)	0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1435	chr11	111535312	111535313	rs4459340	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q23.1	SIK2	rs4459340-G	0.275503	2E-12		0.047695614	[0.034-0.061] unit increase	Affymetrix [7288503] (imputed)	N
1435	chr11	111536189	111536190	rs9734135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q23.1		rs9734135-A	NR	8E-14		0.0487	[0.036-0.061] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1436	chr11	111542505	111542506	rs1940528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	SIK2, AP000925.2	rs1940528-G	NR	5E-9		0.0210902	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1436	chr11	111542505	111542506	rs1940528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q23.1	SIK2, AP000925.2	rs1940528-G	NR	2E-9		0.0215739	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1436	chr11	111543915	111543916	rs7119563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q23.1	SIK2	rs7119563-A	0.27381	6E-12		0.017285319	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr11	111543915	111543916	rs7119563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q23.1		rs7119563-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1436	chr11	111560027	111560028	rs11213979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q23.1	SIK2	rs11213979-A	NR	3E-10		0.0186851	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1436	chr11	111560027	111560028	rs11213979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	SIK2	rs11213979-A	NR	5E-11		0.0194844	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1436	chr11	111560027	111560028	rs11213979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	SIK2	rs11213979-A	NR	9E-12		0.0203469	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1436	chr11	111560027	111560028	rs11213979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q23.1	SIK2	rs11213979-A	NR	1E-11		0.020199	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1436	chr11	111561095	111561096	rs17474401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	SIK2	rs17474401-G	NR	8E-15		0.0291754	[0.022-0.037] unit increase	Affymetrix [321114] (imputed)	N
1436	chr11	111568090	111568091	rs12363179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	11q23.1		rs12363179-A	NR	4E-8		0.047	[0.03-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1436	chr11	111579938	111579939	rs7937682	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	11q23.1	SIK2	rs7937682-C	0.28	5E-7		1.14	[1.08-1.20]	Affymetrix, Illumina [7891602] (imputed)	N
1436	chr11	111579938	111579939	rs7937682	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	11q23.1	SIK2	rs7937682-G	0.265	3E-9		1.17	[1.11-1.24]	Illumina [140322] (imputed)	N
1436	chr11	111586090	111586091	rs12362593	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q23.1	SIK2	rs12362593-C	0.73	2E-10		0.1275	[0.088-0.167] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1436	chr11	111586949	111586950	rs17565975	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q23.1	SIK2	rs17565975-A	0.4288	8E-9		0.011733049	[0.0078-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1436	chr11	111586949	111586950	rs17565975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.1	Intergenic	rs17565975-A	0.5482	3E-13	(MTAG)	0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1436	chr11	111586949	111586950	rs17565975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.1		rs17565975-A	0.5563	6E-14		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1436	chr11	111586949	111586950	rs17565975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.1	Intergenic	rs17565975-A	0.5563	5E-15	(MTAG)	0.0103	[0.0078-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1436	chr11	111605214	111605215	rs10891290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q23.1	NR	rs10891290-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
1436	chr11	111605214	111605215	rs10891290	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q23.1	NR	rs10891290-T	0.6404	6E-36		0.0232	[0.019-0.027] unit increase	NR [~ 27400000] (imputed)	N
1436	chr11	111605214	111605215	rs10891290	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q23.1	NR	rs10891290-T	0.6409	2E-27		0.0199	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1436	chr11	111608257	111608258	rs45568137	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.1	NR	rs45568137-G	NR	5E-10		0.0373	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1436	chr11	111609173	111609174	rs647080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.1	PPP2R1B	rs647080-A	0.329583	2E-21		0.022531522	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr11	111623087	111623088	rs4936675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q23.1		rs4936675-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1436	chr11	111623694	111623694	rs112125399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q23.1		rs112125399-AAAAC	NR	4E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1436	chr11	111623694	111623694	rs112125399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q23.1	NR	rs112125399-I	0.669084	2E-15		0.016784	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1436	chr11	111633277	111633277	rs545160179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q23.1	PPP2R1B	rs545160179-CT	0.478042	6E-9		0.013914157	[0.0092-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr11	111634591	111634592	rs11213999	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	11q23.1	NR	rs11213999-A	0.08	5E-7		5.04	[NR] z score decrease	Illumina [9009554] (imputed)	N
1436	chr11	111636626	111636627	rs643506	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q23.1	NR	rs643506-G	0.6757	2E-7	(EA)	0.0344	[0.021-0.047] unit decrease	Illumina [~ 11800000] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q23.1	RP11-108O10.2	rs3829258-A	NR	9E-23		0.0285706	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	RP11-108O10.2	rs3829258-A	NR	7E-24		0.0293352	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	RP11-108O10.2	rs3829258-A	NR	6E-24		0.0296157	[0.024-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q23.1	RP11-108O10.2	rs3829258-A	NR	5E-24		0.0297	[0.024-0.035] unit decrease	Affymetrix [321169] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q23.1	NR	rs3829258-?	NR	1E-32				Affymetrix [~ 8270000] (imputed)	N
1436	chr11	111642118	111642119	rs3829258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q23.1		rs3829258-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1436	chr11	111644400	111644401	rs17566828	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.1	PPP2R1B	rs17566828-G	0.959171	4E-10		0.0300435	[0.021-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1436	chr11	111644823	111644824	rs2850248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.1	RP11-108O10.2	rs2850248-A	0.668948	2E-17		0.020392887	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr11	111644823	111644824	rs2850248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q23.1	RP11-108O10.2	rs2850248-A	0.669058	8E-14		0.0168814	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr11	111647843	111647844	rs633045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	RP11-108O10.2	rs633045-A	NR	2E-8		0.0290797	[0.019-0.039] unit increase	Affymetrix [321114] (imputed)	N
1436	chr11	111647843	111647844	rs633045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	11q23.1	NR	rs633045-C	NR	3E-9		0.0263	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1436	chr11	111647997	111647998	rs10502148	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q23.1	NR	rs10502148-C	0.64	9E-34		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
1436	chr11	111647997	111647998	rs10502148	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q23.1	NR	rs10502148-C	0.64	5E-8				Affymetrix [2446094] (imputed)	N
1436	chr11	111647997	111647998	rs10502148	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	11q23.1	NR	rs10502148-T	0.3572	6E-36		0.023	[0.019-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1436	chr11	111661685	111661686	rs625477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q23.1	ALG9	rs625477-A	NR	9E-11		0.0189728	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1436	chr11	111661685	111661686	rs625477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	ALG9	rs625477-A	NR	1E-11		0.0197511	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1436	chr11	111661685	111661686	rs625477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	ALG9	rs625477-A	NR	8E-14		0.0220192	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1436	chr11	111664400	111664401	rs12363917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q23.1		rs12363917-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1436	chr11	111668255	111668256	rs3867466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.1		rs3867466-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1437	chr11	111693653	111693654	rs608091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q23.1		rs608091-A	NR	1E-11		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1437	chr11	111701268	111701269	rs623491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q23.1	ALG9	rs623491-G	NR	6E-12		0.0202246	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1437	chr11	111703190	111703191	rs11214013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q23.1	ALG9	rs11214013-T	NR	2E-11		0.0250318	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
1437	chr11	111703190	111703191	rs11214013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	ALG9	rs11214013-T	NR	7E-12		0.0255603	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
1437	chr11	111703190	111703191	rs11214013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	11q23.1	ALG9	rs11214013-T	NR	3E-11		0.0249215	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
1437	chr11	111703190	111703191	rs11214013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.1	NR	rs11214013-T	0.168289	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
1437	chr11	111716697	111716698	rs77035895	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.1	NR	rs77035895-G	0.02962	1E-8	(AK1)	0.06128	NR unit decrease	Illumina [1671387] (imputed)	N
1437	chr11	111734142	111734143	rs673526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q23.1	NR	rs673526-C	0.175694	2E-11		0.016945	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1437	chr11	111749348	111749349	rs611010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q23.1	NR	rs611010-A	0.17628	2E-10		0.015658	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1437	chr11	111760737	111760738	rs2850245	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.1	C11orf1	rs2850245-G	0.369952	9E-16		0.0165359	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
1437	chr11	111769430	111769431	rs57414412	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	11q23.1	CRYAB	rs57414412-G	0.718591	1E-8		0.015836	[0.01-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1437	chr11	111772352	111772353	rs6589252	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q23.1	NR	rs6589252-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1437	chr11	111772352	111772353	rs6589252	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q23.1	NR	rs6589252-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1437	chr11	111773295	111773296	rs11214037	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	11q23.1	CRYAB	rs11214037-C	0.717	2E-11		0.497	[0.35-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1437	chr11	111773598	111773599	rs116920534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q23.1	NR	rs116920534-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1437	chr11	111776065	111776066	rs12808601	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11q23.1	CRYAB	rs12808601-G	0.7	3E-13		0.51	[0.37-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1437	chr11	111784228	111784229	rs4252588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q23.1	CRYAB, HSPB2, HSPB2-C11orf52	rs4252588-T	NR	4E-8		0.03385	[0.022-0.046] unit increase	Affymetrix [323123] (imputed)	N
1438	chr11	111845331	111845332	rs72991443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q23.1	DIXDC1	rs72991443-T	NR	1E-8		0.0267091	[0.018-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1438	chr11	111845331	111845332	rs72991443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q23.1	DIXDC1	rs72991443-T	NR	9E-9		0.026807	[0.018-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1438	chr11	111845331	111845332	rs72991443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q23.1	NR	rs72991443-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1438	chr11	111889394	111889395	rs74373890	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11q23.1	DIXDC1	rs74373890-G		1E-8		0.952	[NR]	Affymetrix [up to 79000000] (imputed)	N
1438	chr11	111889394	111889395	rs74373890	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.1	NR	rs74373890-G	0.0415	7E-13		0.0205898	[0.015-0.026] unit decrease	NR [9732723] (imputed)	N
1438	chr11	111889653	111889654	rs476581	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q23.1	NR	rs476581-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1438	chr11	111895253	111895254	rs2276390	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q23.1	NA	rs2276390-T	0.3375	6E-28		0.021	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1438	chr11	111925958	111925959	rs375899200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11q23.1	DLAT	rs375899200-AT	NR	4E-8		0.0177976	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1438	chr11	111925958	111925959	rs375899200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11q23.1	DLAT	rs375899200-AT	NR	3E-8		0.0179001	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1439	chr11	111967636	111967636	rs58847227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	11q23.1	SDHD	rs58847227-GGAGT	NR	2E-9		0.026195	[0.018-0.035] unit increase	Affymetrix [321114] (imputed)	N
1439	chr11	111972655	111972656	rs498547	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q23.1	SDHD	rs498547-T	0.369	4E-9		0.0072	[0.0048-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1439	chr11	111979740	111979741	rs76460663	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q23.1	NR	rs76460663-G	0.041056	4E-11	(Conditioned on chr11:112984491, chr11:112912811)	0.042349987	[0.03-0.055] unit decrease	NR [~ 10000000] (imputed)	N
1439	chr11	111985736	111985737	rs11214088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q23.1		rs11214088-C	NR	4E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1439	chr11	111997762	111997763	rs4937075	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Trypanosoma cruzi infection	1,019 Colombian ancestry cases, 1,104 Colombian ancestry controls	NA	11q23.1		rs4937075-C	0.77	8E-7		1.02	[0.86-1.21]	Illumina [7846902] (imputed)	N
1439	chr11	112009604	112009605	rs71478720	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	11q23.1	IL18	rs71478720-C		4E-22		0.2669	[0.21-0.32] SD units increase	NR [10700000] (imputed)	N
1439	chr11	112023826	112023827	rs1834481	20150558	He M	2010-02-11	Arterioscler Thromb Vasc Biol	Genome-wide association study identifies variants at the IL18-BCO2 locus associated with interleukin-18 levels.	Interleukin-18 levels	1,523 European ancestry female individuals	435 European ancestry female individuals	11q23.1	BCO2	rs1834481-G	0.24	1E-8				Affymetrix [704409]	N
1439	chr11	112024602	112024603	rs5744250	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q23.1	NR	rs5744250-C	0.0493	4E-10		0.0224902	[0.015-0.03] unit increase	NR [9732723] (imputed)	N
1439	chr11	112025305	112025306	rs5744249	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	11q23.1		rs5744249-A	0.76	1E-119		0.2275	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1439	chr11	112051168	112051169	rs2115763	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IL 18 plasma levels	400 French ancestry individuals	NA	11q23.1		rs2115763-A	NR	4E-6		0.143	[0.086-0.2] pg/mL increase	Illumina [5201092] (imputed)	N
1439	chr11	112051168	112051169	rs2115763	20150558	He M	2010-02-11	Arterioscler Thromb Vasc Biol	Genome-wide association study identifies variants at the IL18-BCO2 locus associated with interleukin-18 levels.	Interleukin-18 levels	1,523 European ancestry female individuals	435 European ancestry female individuals	11q23.1	BCO2	rs2115763-T	0.33	4E-9				Affymetrix [704409]	N
1439	chr11	112052193	112052194	rs75649625	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q23.1	IL18	rs75649625-G	0.76	4E-33		0.29	unit increase	Illumina [5270624] (imputed)	N
1439	chr11	112064430	112064431	rs7105056	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	11q23.1	BCO2	rs7105056-A		1E-8	(EA)			Illumina [NR]	N
1440	chr11	112072929	112072930	rs4935984	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Interleukin-18 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	11q23.1	NR	rs4935984-A	NR	1E-300		0.2717	[0.26-0.28] unit increase	Illumina [~ 9000000] (imputed)	N
1440	chr11	112082008	112082009	rs11214136	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine metabolism (carbamazepine-10,11-diol to carbamazepine ratio) in epilepsy	468 European ancestry cases	NA	11q23.1	NR	rs11214136-?		1E-6		0.095	[NR] unit decrease	Illumina [NR]	N
1440	chr11	112085315	112085316	rs2250417	31584380	Sun W	2019-10-04	Med Chem	The Assessment of Interleukin-18 on the Risk of Coronary Heart Disease.	Interleukin-18 levels	4,433 European ancestry individuals	NA	11q23.1	BCO2, IL18	rs2250417-?	NR	2E-32		0.1	[0.08-0.12] unit increase	Illumina [up to 2543887] (imputed)	N
1440	chr11	112085315	112085316	rs2250417	24182552	Matteini AM	2013-10-29	Cytokine	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adult individuals	NA	11q23.1	BCO2, IL18, TEX12	rs2250417-T	0.48	2E-32	(IL18)	0.1	[0.08-0.12] unit increase	Illumina [2543887] (imputed)	N
1440	chr11	112085315	112085316	rs2250417	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	11q23.1	BC02	rs2250417-?	NR	3E-14	(Interleukin-18 (IL-18))			Illumina [up to 10879115] (imputed)	N
1440	chr11	112085315	112085316	rs2250417	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q23.1	IL18	rs2250417-?	0.44	7E-13	(IL18)			Illumina [496032]	N
1440	chr11	112099409	112099410	rs3819331	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.1	PTS	rs3819331-T	0.8531	2E-18		0.0233552	[0.018-0.029] unit increase	NR [13737936] (imputed)	N
1440	chr11	112110090	112110091	rs35082717	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	11q23.1	NR	rs35082717-G		4E-14		0.1977	[0.15-0.25] SD units decrease	NR [10700000] (imputed)	N
1440	chr11	112118590	112118592	rs146727601	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment	323 European ancestry bipolar disorder responder cases, 6,684 European ancestry controls	NA	11q23.1	PLET1, PTS	rs146727601-?	0.01	1E-8		3.98	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1440	chr11	112194984	112194984	rs71060244	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs71060244-?	NR	3E-20		0.0217906	[0.017-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1441	chr11	112208966	112208967	rs1404792	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Interleukin-18 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	11q23.1	NR	rs1404792-T	NR	7E-153		0.1828	[0.17-0.2] unit increase	Illumina [~ 9000000] (imputed)	N
1441	chr11	112209415	112209416	rs4542449	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs4542449-?	NR	2E-19		0.0180846	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1441	chr11	112211379	112211380	rs4937291	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	11q23.1	NR	rs4937291-G		3E-9		0.1497	[0.1-0.2] SD units increase	NR [10700000] (imputed)	N
1441	chr11	112211790	112211791	rs1534112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.1		rs1534112-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1441	chr11	112218096	112218097	rs4937300	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q23.1	NR	rs4937300-?		3E-9	(IL18)	0.2215	[NR] unit decrease	Illumina [NR]	N
1441	chr11	112226162	112226163	rs10789869	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q23.1	NR	rs10789869-?	NR	7E-8				Affymetrix [NR]	N
1441	chr11	112262963	112262964	rs188168326	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11q23.1	Intergenic	rs188168326-T	NR	9E-8	(between families)	5.352	unit increase	Affymetrix [up to 15107142] (imputed)	N
1441	chr11	112263502	112263503	rs10891354	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q23.1	NR	rs10891354-C	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1441	chr11	112304988	112304989	rs11214200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.1		rs11214200-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1442	chr11	112375091	112375092	rs144115184	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs144115184-?	NR	1E-18		0.0847263	[0.066-0.104] unit decrease	Affymetrix [20259828] (imputed)	N
1442	chr11	112401448	112401449	rs11606786	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs11606786-?	NR	2E-69		0.0564529	[0.05-0.063] unit decrease	Affymetrix [20259828] (imputed)	N
1442	chr11	112424564	112424565	rs6589301	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs6589301-?	NR	3E-209		0.0633024	[0.059-0.067] unit increase	Affymetrix [20259828] (imputed)	N
1442	chr11	112424564	112424565	rs6589301	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.1	LOC387810	rs6589301-G	0.41504	5E-32	(men)	0.0614765	[0.051-0.072] unit increase	NR [17166351] (imputed)	N
1442	chr11	112424564	112424565	rs6589301	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.1	LOC387810	rs6589301-G	0.414843	7E-60		0.0547457	[0.048-0.061] unit increase	NR [17166351] (imputed)	N
1442	chr11	112424564	112424565	rs6589301	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.1	LOC387810	rs6589301-G	0.414671	3E-29	(women)	0.0501373	[0.041-0.059] unit increase	NR [17166351] (imputed)	N
1442	chr11	112433437	112433438	rs7952251	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs7952251-?	NR	8E-187		0.0590812	[0.055-0.063] unit increase	Affymetrix [20259828] (imputed)	N
1442	chr11	112433437	112433438	rs7952251	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q23.1	LOC387810	rs7952251-G	0.47	5E-9		0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
1442	chr11	112435379	112435380	rs7109326	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	11q23.1	LOC387810	rs7109326-G	0.45	2E-9	(female)	0.09	[0.07-0.11] unit increase	Illumina [11973598] (imputed)	N
1442	chr11	112437006	112437007	rs7121746	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.1	LOC387810	rs7121746-A	0.416166	4E-166		0.0530909	[0.049-0.057] unit increase	NR [13737936] (imputed)	N
1442	chr11	112437006	112437007	rs7121746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.1		rs7121746-?	NR	6E-210				NR [~ 8900000] (imputed)	N
1442	chr11	112437006	112437007	rs7121746	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs7121746-?	NR	4E-213		0.0640469	[0.06-0.068] unit increase	Affymetrix [20259828] (imputed)	N
1442	chr11	112456220	112456221	rs7105881	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	11q23.1	intergenic	rs7105881-?	0.367	3E-7	(risperidone-hip circumference)			Affymetrix [492900]	N
1443	chr11	112474709	112474710	rs11214269	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.1		rs11214269-?	NR	9E-19		0.0175196	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1443	chr11	112532928	112532929	rs957962	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q23.1	RP11-65M17.3	rs957962-A	0.4601	6E-6		0.0309	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1443	chr11	112559813	112559814	rs10789907	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.1	NR	rs10789907-?	NR	9E-8		5.34	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1444	chr11	112642631	112642632	rs7113211	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.2	NCAM1	rs7113211-A	0.489	1E-16	(Neural cell adhesion molecule 1, 120 kDa isoform, NCAM1.4498.62.2)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1444	chr11	112642631	112642632	rs7113211	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	11q23.2	NR	rs7113211-A	0.5	9E-6	(15-18 months)	0.073	[0.04-0.106] unit decrease	Illumina [2449665] (imputed)	N
1444	chr11	112653996	112653997	rs1447462	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	11q23.2	NR	rs1447462-?	0.07184	8E-6		0.09553	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1444	chr11	112679060	112679061	rs77000039	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	11q23.2		rs77000039-A	NR	3E-6		2.81	[1.82-4.32]	Affymetrix [NR] (imputed)	N
1444	chr11	112687712	112687713	rs116844387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.2		rs116844387-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1444	chr11	112704994	112704995	rs76161425	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs76161425-T	0.10871	1E-25		0.406	[0.33-0.48] unit decrease	Illumina [18430788] (imputed)	N
1444	chr11	112705024	112705025	rs78268116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs78268116-T	0.10962	3E-25		0.4086	[0.33-0.49] unit decrease	Illumina [18427377] (imputed)	N
1444	chr11	112705024	112705025	rs78268116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs78268116-T	0.10965	5E-24		0.3964	[0.32-0.47] unit decrease	Illumina [18427348] (imputed)	N
1444	chr11	112705024	112705025	rs78268116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs78268116-T	0.10945	2E-24		0.3961	[0.32-0.47] unit decrease	Illumina [18430788] (imputed)	N
1444	chr11	112713856	112713857	rs17417989	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q23.2	NCAM1	rs17417989-T	0.2997	1E-13		0.017587531	[0.013-0.022] unit increase	Affymetrix [11514654] (imputed)	N
1445	chr11	112745403	112745404	rs34584760	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs34584760-C	0.10315	2E-16		0.3325	[0.25-0.41] unit decrease	Illumina [18427348] (imputed)	N
1445	chr11	112749799	112749800	rs77291736	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77291736-T	0.10932	1E-21		0.3692	[0.29-0.44] unit decrease	Illumina [18427348] (imputed)	N
1445	chr11	112749799	112749800	rs77291736	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77291736-T	0.10862	7E-155		1.076	[1-1.15] unit decrease	Illumina [18030777] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10669	9E-26		0.4214	[0.34-0.5] unit decrease	Illumina [18430820] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %T cell	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10669	1E-27		0.435	[0.36-0.51] unit decrease	Illumina [18430820] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10672	5E-16		0.3205	[0.24-0.4] unit decrease	Illumina [18430788] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10672	2E-16		0.3265	[0.25-0.4] unit decrease	Illumina [18430788] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10672	8E-22		0.3774	[0.3-0.45] unit decrease	Illumina [18430788] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10672	3E-22		0.3832	[0.31-0.46] unit decrease	Illumina [18430788] (imputed)	N
1445	chr11	112751406	112751407	rs77738700	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs77738700-A	0.10672	9E-71		0.7478	[0.67-0.83] unit decrease	Illumina [18030777] (imputed)	N
1445	chr11	112751973	112751974	rs78358948	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs78358948-A	0.10964	1E-15		0.3396	[0.26-0.42] unit decrease	Illumina [17967059] (imputed)	N
1445	chr11	112767386	112767387	rs7115027	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q23.2	NCAM1	rs7115027-T	0.8482	4E-9		0.016431743	[0.011-0.022] unit decrease	Affymetrix [11514654] (imputed)	N
1445	chr11	112773193	112773194	rs11214413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q23.2		rs11214413-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1445	chr11	112791982	112791983	rs4245128	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	11q23.2	NR	rs4245128-A	0.3456	9E-6		0.0167	[0.0093-0.0241] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1445	chr11	112826866	112826867	rs2212450	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11q23.2	NCAM1	rs2212450-?	0.43420000000000003	5E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1445	chr11	112826866	112826867	rs2212450	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q23.2	NR	rs2212450-T	0.5723	9E-9		0.02432692	[0.016-0.033] unit decrease	NR [NR]	N
1445	chr11	112826866	112826867	rs2212450	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q23.2	NR	rs2212450-?		5E-9				NR [520857]	N
1445	chr11	112826866	112826867	rs2212450	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q23.2	NA	rs2212450-T	0.5703	2E-6		0.0081	[0.0048-0.0114] unit increase	NR [~ 27400000] (imputed)	N
1445	chr11	112827047	112827048	rs2186710	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	11q23.2	NR	rs2186710-G	NR	2E-8		0.01344	NR unit increase	NR [7259579]	N
1445	chr11	112827047	112827048	rs2186710	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q23.2	Intergenic	rs2186710-C	0.5927	8E-11	(MTAG)	0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1445	chr11	112827047	112827048	rs2186710	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs2186710-C	NR	1E-14		7.744	z score decrease	Affymetrix [10847151] (imputed)	N
1445	chr11	112827047	112827048	rs2186710	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.2	NR	rs2186710-?	NR	2E-6		4.714	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1445	chr11	112827714	112827715	rs4937872	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	11q23.2	RP11, 629G13.1	rs4937872-A	0.4543	2E-14		0.018045627	[0.013-0.023] unit decrease	NR [9417325] (imputed)	N
1445	chr11	112827714	112827715	rs4937872	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11q23.2	NR	rs4937872-G	NR	1E-9		0.01489	[0.01-0.02] unit increase	Affymetrix [10847151] (imputed)	N
1445	chr11	112827714	112827715	rs4937872	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	11q23.2	NCAM1	rs4937872-A	0.417009	5E-11		6.57	z score decrease	NR [10847151] (imputed)	N
1445	chr11	112830525	112830526	rs10891480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q23.2		rs10891480-G	NR	2E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1445	chr11	112830525	112830526	rs10891480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q23.2		rs10891480-G	NR	1E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1445	chr11	112830662	112830663	rs10789929	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q23.2	NCAM1	rs10789929-T	0.393947	4E-12		6.95	z score increase	NR [10847151] (imputed)	N
1445	chr11	112830781	112830782	rs11214436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q23.2		rs11214436-T	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1445	chr11	112833245	112833246	rs59867819	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	11q23.2	NR	rs59867819-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1445	chr11	112833617	112833618	rs4533068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	11q23.2		rs4533068-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1445	chr11	112834152	112834153	rs7111153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.2	Intergenic	rs7111153-T	0.6012	1E-20	(MTAG)	0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1445	chr11	112834152	112834153	rs7111153	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q23.2	Intergenic	rs7111153-T	0.6012	4E-18		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1445	chr11	112837877	112837878	rs10891483	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q23.2	NR	rs10891483-T	0.12	5E-9		0.017	[0.012-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1445	chr11	112837877	112837878	rs10891483	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q23.2	NR	rs10891483-T	0.12	5E-8				Affymetrix [2446094] (imputed)	N
1445	chr11	112838337	112838338	rs2155281	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	NCAM1	rs2155281-G	NR	2E-8		0.0098168	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
1445	chr11	112839531	112839532	rs7948789	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	11q23.2	NCAM1	rs7948789-G	0.386	6E-27		0.0252	[0.021-0.03] unit increase	Illumina [~ 250000] (imputed)	N
1445	chr11	112842772	112842773	rs10789931	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q23.2	NR	rs10789931-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1445	chr11	112842975	112842976	rs7126748	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	11q23.2	NCAM1	rs7126748-T		4E-8		0.954	[NR]	Affymetrix [~ 79000000] (imputed)	N
1445	chr11	112843005	112843006	rs11214440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.2		rs11214440-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1445	chr11	112843137	112843138	rs7110863	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11q23.2	NCAM1	rs7110863-G		2E-35		1.045	[NR]	Affymetrix [up to 79000000] (imputed)	N
1445	chr11	112843137	112843138	rs7110863	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11q23.2	NR	rs7110863-G	0.404	3E-11		0.0103841	[0.0073-0.0134] unit increase	NR [9732723] (imputed)	N
1445	chr11	112843615	112843616	rs2186709	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q23.2	NR	rs2186709-G	0.6	2E-24		0.0152334	[0.012-0.018] unit increase	NR [9732723] (imputed)	N
1445	chr11	112846712	112846713	rs11214441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs11214441-A	0.395866708999966	4E-15		0.0073846052	[0.0055-0.0092] unit increase	NR [NR]	N
1445	chr11	112846712	112846713	rs11214441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs11214441-A	0.395866708999966	1E-14		0.008991173	[0.0067-0.0113] unit increase	NR [NR]	N
1445	chr11	112846712	112846713	rs11214441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs11214441-A	0.395866708999966	8E-15		0.011739225	[0.0088-0.0147] unit increase	NR [NR]	N
1445	chr11	112846712	112846713	rs11214441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs11214441-A	0.395866708999966	9E-14		0.009536479	[0.007-0.012] unit increase	NR [NR]	N
1445	chr11	112846712	112846713	rs11214441	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs11214441-A	0.395866708999966	1E-14		0.0074607884	[0.0056-0.0094] unit increase	NR [NR]	N
1445	chr11	112849718	112849719	rs1940709	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs1940709-A	NR	2E-12		7.061	z score increase	Affymetrix [10847151] (imputed)	N
1445	chr11	112849718	112849719	rs1940709	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs1940709-A	NR	3E-9		0.01576	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1445	chr11	112851067	112851068	rs2155290	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	11q23.2	NR	rs2155290-G	0.3826	9E-36		1.067	[1.06-1.08]	NR [8968716] (imputed)	N
1445	chr11	112851067	112851068	rs2155290	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	11q23.2	NCAM1	rs2155290-C	0.617	4E-24		0.026843483	[0.022-0.032] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1445	chr11	112851067	112851068	rs2155290	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	11q23.2	NCAM1	rs2155290-C	0.6167	5E-11		0.015957858	[0.011-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1445	chr11	112851960	112851961	rs2298527	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	11q23.2	NCAM1	rs2298527-G	0.405568	2E-10		0.014947	[0.01-0.02] unit increase	Affymetrix [19400838] (imputed)	N
1445	chr11	112851960	112851961	rs2298527	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q23.2	intergenic	rs2298527-C	0.58222	3E-11		6.653	z score decrease	Illumina [18485882] (imputed)	N
1445	chr11	112852194	112852195	rs1940728	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q23.2	NR	rs1940728-T	0.403	3E-14		0.0103804	[0.0077-0.0131] unit increase	NR [~ 9732723] (imputed)	N
1445	chr11	112852194	112852195	rs1940728	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs1940728-?	NR	1E-8		0.01354	[0.0089-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
1446	chr11	112854142	112854142	rs11396766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q23.2		rs11396766-AT	NR	2E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1446	chr11	112860578	112860579	rs7106434	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	11q23.2	NR	rs7106434-T	0.4095	9E-11		0.020919405	[0.014-0.027] unit increase	Illumina [9885498] (imputed)	N
1446	chr11	112861433	112861434	rs4466874	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	11q23.2	NCAM1	rs4466874-C	0.385	3E-12		1.1	[1.07-1.13]	Affymetrix [28509962] (imputed)	N
1446	chr11	112862230	112862230	rs111709606	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11q23.2	NCAM1	rs111709606-G	0.625495	2E-13		0.0158843	[0.012-0.02] unit increase	NR [16516521] (imputed)	N
1446	chr11	112863578	112863579	rs4424705	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11q23.2	NCAM1	rs4424705-A	0.256746	1E-9		6.07	z score increase	NR [10847151] (imputed)	N
1446	chr11	112866455	112866456	rs4144892	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	11q23.2	NCAM1	rs4144892-T	NR	7E-25		0.023	[0.018-0.028] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1446	chr11	112867984	112867985	rs11214447	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs11214447-A	NR	2E-8		5.63	z score increase	Affymetrix [10847151] (imputed)	N
1446	chr11	112871095	112871096	rs10789934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.2	Intergenic	rs10789934-A	0.1171	8E-10	(MTAG)	0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1446	chr11	112877303	112877304	rs9919670	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	11q23.2		rs9919670-G	0.612	8E-27		0.022	[0.018-0.026] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1446	chr11	112877407	112877408	rs9919557	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	11q23.2	NCAM1	rs9919557-T	0.4344	7E-7		0.011342609	[0.0062-0.0165] unit decrease	NR [9417325] (imputed)	N
1446	chr11	112877407	112877408	rs9919557	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	11q23.2	NCAM1	rs9919557-T	0.614	1E-10		0.055	[0.037-0.073] unit decrease	Affymetrix, Illumina [11733371] (imputed)	N
1446	chr11	112877408	112877409	rs9919558	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q23.2		rs9919558-T	0.613	7E-59		0.02	[0.018-0.022] unit decrease	NR [NR] (imputed)	N
1446	chr11	112885526	112885527	rs10891490	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	11q23.2	NCAM1	rs10891490-T	0.4085	2E-8		0.0188	[0.012-0.025] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
1446	chr11	112897072	112897073	rs11214468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q23.2		rs11214468-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1446	chr11	112898215	112898216	rs10891491	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	11q23.2	NCAM1	rs10891491-C	0.89	4E-8		0.95	[NR]	NR [8546065] (imputed)	N
1446	chr11	112905128	112905129	rs7128648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q23.2		rs7128648-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1446	chr11	112909395	112909396	rs7947502	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Irritable bowel syndrome	28,518 European ancestry cases, 426,803 European ancestry controls	NA	11q23.2	NCAM1	rs7947502-C	0.41	3E-8		1.05		NR [8546065] (imputed)	N
1446	chr11	112909395	112909396	rs7947502	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q23.2	NCAM1	rs7947502-C	0.4063	6E-7		0.0075	[0.0046-0.0104] unit increase	Affymetrix [~ 7740000] (imputed)	N
1446	chr11	112910782	112910783	rs2155292	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.2	Intergenic	rs2155292-A	0.5992	9E-17	(MTAG)	0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1446	chr11	112911003	112911004	rs7938812	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q23.2	NCAM1	rs7938812-T	0.6095	7E-48		0.029930087	[0.026-0.034] unit decrease	Affymetrix [11514654] (imputed)	N
1446	chr11	112912047	112912048	rs7105462	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	11q23.2	NCAM1, ARL6IP1	rs7105462-G	0.40559	2E-9		0.014163	[0.0095-0.0188] unit increase	Affymetrix [19400838] (imputed)	N
1446	chr11	112912429	112912430	rs3802849	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q23.2	NCAM1	rs3802849-?	NR	4E-8		0.444	[0.29-0.6] unit decrease	Affymetrix [11100000] (imputed)	N
1446	chr11	112912517	112912518	rs3802850	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q23.2	Intergenic	rs3802850-A	0.5988	3E-11		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1446	chr11	112912810	112912811	rs2155646	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.2	NR	rs2155646-C	0.4	3E-61		0.0181277	[0.016-0.02] unit increase	NR [9732723] (imputed)	N
1446	chr11	112912810	112912811	rs2155646	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q23.2	NR	rs2155646-C	0.4	9E-48		0.037777152	[0.033-0.043] unit increase	NR [~ 10000000] (imputed)	N
1446	chr11	112912810	112912811	rs2155646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11q23.2		rs2155646-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1446	chr11	112912946	112912947	rs2155645	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q23.2	NA	rs2155645-T	0.259	8E-10		0.0114	[0.0077-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
1446	chr11	112917110	112917111	rs12574893	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q23.2	NCAM1	rs12574893-?	NR	1E-10		0.016520007	[0.012-0.022] unit decrease	NR [7306098]	N
1446	chr11	112920920	112920921	rs10891496	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs10891496-T	NR	3E-9		5.926	z score increase	Affymetrix [10847151] (imputed)	N
1446	chr11	112924113	112924114	rs10891499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.2		rs10891499-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1446	chr11	112931624	112931625	rs1836798	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs1836798-G	0.21364	9E-17		0.2756	[0.21-0.34] unit increase	Illumina [18030777] (imputed)	N
1446	chr11	112938088	112938089	rs1245101	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q23.2	NR	rs1245101-C	0.42592	5E-9		5.86	z score decrease	NR [10847151] (imputed)	N
1446	chr11	112942143	112942147	rs66821824	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	11q23.2	NCAM1	rs66821824-ATTTT	0.783323	2E-9		0.0281245	[0.019-0.037] unit increase	Affymetrix [641018] (imputed)	N
1446	chr11	112944049	112944050	rs11214475	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.2	NR	rs11214475-?	NR	1E-6		4.865	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1446	chr11	112948574	112948575	rs141881809	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	11q23.2	NCAM1	rs141881809-G	0.02	3E-7		19.22	[11.90-26.54] unit increase	Illumina [NR] (imputed)	N
1446	chr11	112948574	112948575	rs141881809	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	11q23.2	NCAM1	rs141881809-G	0.02	6E-10		20.6	[14.13-27.07] unit increase	Illumina [NR] (imputed)	N
1446	chr11	112952280	112952281	rs370072066	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.2		rs370072066-CT	0.21319	2E-14		0.2539	[0.19-0.32] unit increase	Illumina [18030777] (imputed)	N
1446	chr11	112960099	112960100	rs5794844	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.2	NCAM1	rs5794844-GT		4E-8		0.355	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1446	chr11	112960099	112960100	rs5794844	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.2	NCAM1	rs5794844-GT		3E-9		0.268	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1446	chr11	112965155	112965156	rs2885208	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q23.2	NR	rs2885208-T	NR	5E-8		5.467	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1446	chr11	112968650	112968651	rs1816537	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11q23.2	NR	rs1816537-A	NR	4E-10		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1446	chr11	112968650	112968651	rs1816537	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11q23.2	LOC100288346, TTC12, ANKK1, DRD2, MIR4301	rs1816537-A	0.438271743342601	3E-10		0.019060008	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1446	chr11	112968650	112968651	rs1816537	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.2	NCAM1	rs1816537-C	0.562	2E-7	(EA)	0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1446	chr11	112968650	112968651	rs1816537	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.2	NCAM1	rs1816537-C	0.562	1E-7		0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1446	chr11	112975933	112975934	rs11214489	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	11q23.2		rs11214489-C	0.818	3E-54	(NCAM)	0.368	unit increase	Affymetrix, Illumina [8509364] (imputed)	N
1446	chr11	112983594	112983595	rs4471463	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	11q23.2	NCAM1	rs4471463-T	0.55	9E-7		0.1	[0.059-0.141] unit decrease	Affymetrix, Illumina [6444471] (imputed)	N
1447	chr11	112984490	112984491	rs78239456	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q23.2	NR	rs78239456-T	0.376527	9E-12	(Conditioned on chr11:112912811)	0.018495236	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1447	chr11	112991617	112991618	rs1436109	21212386	Arnett DK	2011-01-06	Circ Res	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	NCAM1	rs1436109-?	NR	9E-7	(Intraventricular septal thickness)			Affymetrix [872242]	N
1447	chr11	112991617	112991618	rs1436109	21212386	Arnett DK	2011-01-06	Circ Res	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	NCAM1	rs1436109-?	NR	4E-9	(Relative wall thickness)			Affymetrix [872242]	N
1447	chr11	112991617	112991618	rs1436109	21212386	Arnett DK	2011-01-06	Circ Res	Genetic variation in NCAM1 contributes to left ventricular wall thickness in hypertensive families.	Cardiac muscle measurement	1,258 Black individuals	989 Black individuals, 1,316 European ancestry individuals	11q23.2	NCAM1	rs1436109-?	NR	3E-7	(Posterior wall thickness)			Affymetrix [872242]	N
1447	chr11	112991920	112991921	rs61902492	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q23.2	NCAM1	rs61902492-A	0.7758	3E-9		0.015495721	[0.01-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1447	chr11	112993847	112993848	rs1273044	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM1	5,366 Icelandic ancestry individuals	NA	11q23.2		rs1273044-T	0.2049	9E-19		0.195642	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1447	chr11	112993847	112993848	rs1273044	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.2	NR	rs1273044-C	0.798	3E-14	(Neural cell adhesion molecule 1, 120 kDa isoform, NCAM1.4498.62.2)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1447	chr11	113026153	113026154	rs1261876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.2		rs1261876-?	NR	6E-41				NR [~ 8900000] (imputed)	N
1447	chr11	113027640	113027641	rs17595156	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.2		rs17595156-?	NR	5E-22		0.032636	[0.026-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1447	chr11	113027640	113027641	rs17595156	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.2	NCAM1	rs17595156-G	0.906746	2E-6	(men)	0.0359869	[0.019-0.053] unit decrease	NR [17166351] (imputed)	N
1447	chr11	113027640	113027641	rs17595156	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.2	NCAM1	rs17595156-G	0.905843	9E-11		0.0337278	[0.022-0.045] unit decrease	NR [17166351] (imputed)	N
1447	chr11	113033219	113033220	rs17510563	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.2	NCAM1	rs17510563-A	0.906904	1E-23		0.0317407	[0.026-0.038] unit decrease	NR [13737936] (imputed)	N
1447	chr11	113033219	113033220	rs17510563	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.2		rs17510563-?	NR	4E-22		0.0326954	[0.026-0.04] unit decrease	Affymetrix [20259828] (imputed)	N
1447	chr11	113033993	113033994	rs143265819	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.2		rs143265819-?	NR	4E-43		0.111955	[0.096-0.128] unit increase	Affymetrix [20259828] (imputed)	N
1447	chr11	113040817	113040818	rs4143165	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q23.2		rs4143165-A	0.14	2E-10		6.34	z score increase	Affymetrix [9061022] (imputed)	N
1447	chr11	113040817	113040818	rs4143165	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q23.2	NR	rs4143165-A	0.1294	3E-9				NR [9056863] (imputed)	N
1447	chr11	113050291	113050292	rs6589360	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q23.2		rs6589360-T	0.15	3E-18		8.73	z score increase	Affymetrix [9061022] (imputed)	N
1447	chr11	113056671	113056672	rs17115088	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.2	NCAM1	rs17115088-C	0.981817	2E-42		0.0943861	[0.081-0.108] unit increase	NR [13737936] (imputed)	N
1447	chr11	113060761	113060762	rs184731128	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	11q23.2	NR	rs184731128-?	NR	1E-6		2.901129	[1.88-4.47]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1447	chr11	113106454	113106455	rs12279261	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	11q23.2	NCAM1	rs12279261-?	NR	9E-6		0.112	[NR] unit decrease	Illumina [478011]	N
1447	chr11	113113151	113113152	rs61902539	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q23.2	NR	rs61902539-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1448	chr11	113120211	113120212	rs3781878	24964207	Mullins N	2014-06-25	Am J Med Genet B Neuropsychiatr Genet	Genetic relationships between suicide attempts, suicidal ideation and major psychiatric disorders: a genome-wide association and polygenic scoring study.	Suicide attempts in depression or bipolar disorder	426 European ancestry cases, 2,844 European ancestry controls	NA	11q23.2	NCAM1	rs3781878-?	0.728	2E-6		1.54	[1.2-2.08]	Illumina [up to 503016]	N
1448	chr11	113125233	113125234	rs605843	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	11q23.2	NCAM1	rs605843-T	0.25	8E-6	(Ajusted for ApoE)	0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1448	chr11	113126273	113126274	rs17115279	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.2	TTC12	rs17115279-?	NR	6E-6	(proline)	0.30845284	[0.17-0.44] unit increase	Affymetrix [at least 2500000] (imputed)	N
1448	chr11	113128060	113128061	rs2186798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM1	5,366 Icelandic ancestry individuals	NA	11q23.2		rs2186798-G	0.1231	7E-17		0.231785	[0.18-0.29] unit increase	Illumina [7506463] (imputed)	N
1448	chr11	113132511	113132512	rs78599561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.2	NR	rs78599561-A	0.123	3E-14	(Neural cell adhesion molecule 1, 120 kDa isoform, NCAM1.4498.62.2)	0.29	[0.21-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1448	chr11	113133675	113133676	rs2288158	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.2	NCAM1	rs2288158-T	0.87375	1E-10	(NCAM1, 4498_62_2)	0.23018664	[0.16-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1448	chr11	113138920	113138921	rs72995548	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	11q23.2	NCAM1, DRD2	rs72995548-?	NR	3E-9		0.0136851	[0.0092-0.0182] unit increase	Affymetrix [NR] (imputed)	N
1448	chr11	113138920	113138921	rs72995548	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	NCAM1	rs72995548-C	NR	6E-9		0.0098886	[0.0066-0.0132] unit decrease	Affymetrix [18485882] (imputed)	N
1448	chr11	113138920	113138921	rs72995548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs72995548-?	NR	5E-8		0.02569	[0.016-0.035] unit decrease	Affymetrix [10847151] (imputed)	N
1448	chr11	113138920	113138921	rs72995548	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11q23.2	NCAM1	rs72995548-T	0.0621829	9E-9		5.74	z score decrease	NR [10847151] (imputed)	N
1448	chr11	113157282	113157283	rs17115310	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	11q23.2	NCAM1	rs17115310-G	NR	3E-8	(k__Bacteria|p__Firmicutes|c__Negativicutes|o__Selenomonadales|f__Acidaminococcaceae)	5.5309467	NR Z-score decrease	Illumina [8100000] (imputed)	N
1448	chr11	113187223	113187224	rs117286758	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	11q23.2	NR	rs117286758-G		7E-6		0.1628	[0.081-0.245] SD units decrease	NR [10700000] (imputed)	N
1448	chr11	113206274	113206275	rs1893696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q23.2		rs1893696-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1448	chr11	113215922	113215923	rs4987094	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q23.2	TTC12	rs4987094-A	NR	2E-8		1.072	[1.05-1.1]	Illumina [6627481] (imputed)	N
1448	chr11	113215922	113215923	rs4987094	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q23.2	TTC12	rs4987094-A	NR	2E-7	(EA)	1.0974	[1.06-1.13]	Illumina [6627481] (imputed)	N
1448	chr11	113215922	113215923	rs4987094	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q23.2	NR	rs4987094-A	NR	6E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
1448	chr11	113234678	113234679	rs719802	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q23.2		rs719802-T	0.39	3E-9				NR [NR] (imputed)	N
1448	chr11	113234678	113234679	rs719802	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q23.2		rs719802-T	0.39	6E-12		0.011	% increase	NR [NR] (imputed)	N
1448	chr11	113234678	113234679	rs719802	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q23.2	TTC12	rs719802-T	0.385578	6E-9		0.00820044	[0.0054-0.011] unit increase	Affymetrix [12370749]	N
1448	chr11	113234678	113234679	rs719802	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.2	NR	rs719802-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1448	chr11	113234678	113234679	rs719802	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q23.2	NR	rs719802-T	0.3861	8E-12		0.01737881	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
1448	chr11	113234678	113234679	rs719802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.2		rs719802-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1448	chr11	113234678	113234679	rs719802	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q23.2	NA	rs719802-T	0.3967	4E-10		0.0114	[0.0079-0.0149] unit increase	NR [~ 27400000] (imputed)	N
1448	chr11	113234678	113234679	rs719802	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q23.2	NA	rs719802-T	0.3974	1E-9		0.0106	[0.0073-0.0139] unit increase	NR [~ 27400000] (imputed)	N
1448	chr11	113234678	113234679	rs719802	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	11q23.2	TTC12	rs719802-T	NR	6E-6		0.0896109	[0.051-0.128] unit increase	Illumina [at least 950000] (imputed)	N
1448	chr11	113235418	113235419	rs2298489	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs2298489-A	NR	5E-12		6.916	z score increase	Affymetrix [10847151] (imputed)	N
1448	chr11	113235418	113235419	rs2298489	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs2298489-?	NR	2E-11		0.01668	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1448	chr11	113236198	113236199	rs10789942	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	11q23.2	TMPRSS5	rs10789942-A	0.476945	2E-8		5.58	z score increase	NR [10847151] (imputed)	N
1448	chr11	113239511	113239512	rs1055075	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	ENSG00000270179	rs1055075-T	NR	7E-10		0.010681	[0.0073-0.0141] unit decrease	Affymetrix [18485882] (imputed)	N
1448	chr11	113242859	113242860	rs2186800	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs2186800-A	NR	6E-14		7.517	z score decrease	Affymetrix [10847151] (imputed)	N
1448	chr11	113245047	113245048	rs11214589	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	TTC12	rs11214589-G	NR	6E-9		0.010185	[0.0068-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
1448	chr11	113245047	113245048	rs11214589	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs11214589-?	NR	2E-8		0.01339	[0.0087-0.018] unit increase	Affymetrix [10847151] (imputed)	N
1448	chr11	113245047	113245048	rs11214589	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11q23.2	NR	rs11214589-G	0.4909	6E-6		0.0161	[0.0092-0.023] unit increase	Illumina [NR] (imputed)	N
1449	chr11	113250345	113250346	rs4601821	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	11q23.2	TTC12, ANKK1, DRD2, MIR4301	rs4601821-?		6E-6		1.223	[1.13-1.33]	Illumina [9389922] (imputed)	N
1449	chr11	113264510	113264511	rs11214596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs11214596-G	0.535012736446464	1E-12		0.0065383534	[0.0047-0.0083] unit decrease	NR [NR]	N
1449	chr11	113264510	113264511	rs11214596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs11214596-G	0.535012736446464	5E-10		0.0084148	[0.0058-0.0111] unit decrease	NR [NR]	N
1449	chr11	113267217	113267218	rs10891547	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11q23.2	ANKK1	rs10891547-A	0.5082	2E-8		0.012622424	[0.0082-0.017] unit decrease	Affymetrix [11514936] (imputed)	N
1449	chr11	113270159	113270160	rs2734849	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	11q23.2	NR	rs2734849-?		8E-10		0.0135145	[0.0092-0.0178] unit decrease	Affymetrix [19400418] (imputed)	N
1449	chr11	113271359	113271360	rs11214599	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	11q23.2		rs11214599-C	0.985058	5E-7		0.0386823	[0.023-0.054] unit decrease	Illumina [13900000] (imputed)	N
1449	chr11	113278446	113278447	rs10891549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs10891549-C	0.545968785932494	2E-12		0.008324472	[0.006-0.0106] unit decrease	NR [NR]	N
1449	chr11	113278763	113278764	rs1554929	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs1554929-T	0.545244878073008	4E-13		0.010978204	[0.008-0.0139] unit decrease	NR [NR]	N
1449	chr11	113278763	113278764	rs1554929	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs1554929-T	0.545244878073008	5E-13		0.006942732	[0.0051-0.0088] unit decrease	NR [NR]	N
1449	chr11	113286489	113286490	rs2734839	25869804	Ibrahim-Verbaas CA	2015-04-14	Mol Psychiatry	GWAS for executive function and processing speed suggests involvement of the CADM2 gene.	Information processing speed	Up to 30,807 European ancestry individuals, up to 1,267 Erasmus Rucphen (founder/genetic isolated) individuals, up to 535 Korculan (founder/genetic isolated) individuals, up to 417 Orcadian (founder/genetic isolated) individuals, up to 311 Vis (founder/genetic isolated) individuals	Up to 8,436 European ancestry individuals, up to 1,444 African American individuals	11q23.2	DRD2	rs2734839-T	0.61	9E-7	(LDST/DSST - age, sex and education adjusted)	4.91	[NR] unit increase	Affymetrix, Illumina [up to 2357391] (imputed)	N
1449	chr11	113286500	113286501	rs2734838	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	11q23.2	NR	rs2734838-G	0.604	3E-11		0.0104198	[0.0074-0.0135] unit decrease	NR [9732723] (imputed)	N
1449	chr11	113286500	113286501	rs2734838	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11q23.2	NR	rs2734838-G	0.604	1E-9		0.013594	[0.0092-0.018] unit decrease	NR [9732723] (imputed)	N
1449	chr11	113286828	113286829	rs2734837	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q23.2	NR	rs2734837-T	0.6084	3E-9		0.02509742	[0.017-0.033] unit decrease	NR [NR]	N
1449	chr11	113286828	113286829	rs2734837	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11q23.2	TMPRSS5	rs2734837-T	0.405872	1E-9		6.05	z score decrease	NR [10847151] (imputed)	N
1449	chr11	113289036	113289037	rs1107162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.2	Intergenic	rs1107162-A	0.6056	1E-9	(MTAG)	0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1449	chr11	113291674	113291675	rs61905363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs61905363-T	0.0388809056950607	1E-9		0.01450081	[0.0098-0.0192] unit decrease	NR [NR]	N
1449	chr11	113291674	113291675	rs61905363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs61905363-T	0.0388809056950607	2E-9		0.01763746	[0.012-0.023] unit decrease	NR [NR]	N
1449	chr11	113291674	113291675	rs61905363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs61905363-T	0.0388809056950607	1E-9		0.022939028	[0.016-0.03] unit decrease	NR [NR]	N
1449	chr11	113291674	113291675	rs61905363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs61905363-T	0.0388809056950607	2E-8		0.01866777	[0.012-0.025] unit decrease	NR [NR]	N
1449	chr11	113291674	113291675	rs61905363	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs61905363-T	0.0388809056950607	1E-9		0.014688093	[0.0099-0.0194] unit decrease	NR [NR]	N
1449	chr11	113296618	113296619	rs1079596	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.2	DRD2	rs1079596-T	0.1767	2E-8		0.0141	[0.0092-0.019] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1449	chr11	113296618	113296619	rs1079596	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	11q23.2	DRD2	rs1079596-?	NR	3E-6	(ANP6)			Affymetrix [70897]	N
1449	chr11	113299828	113299829	rs7131627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.2	Intergenic	rs7131627-A	0.6054	9E-12	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1449	chr11	113299909	113299910	rs7131440	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.2	Intergenic	rs7131440-T	0.6054	5E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1449	chr11	113306892	113306893	rs4587762	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs4587762-A	NR	6E-16		8.093	z score decrease	Affymetrix [10847151] (imputed)	N
1449	chr11	113309868	113309869	rs11214606	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	11q23.2	DRD2	rs11214606-?	0.03	5E-7	(olanzapine)			Affymetrix [492900]	N
1449	chr11	113312138	113312139	rs11214607	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs11214607-T	NR	3E-11		6.67	z score decrease	Affymetrix [10847151] (imputed)	N
1449	chr11	113312138	113312139	rs11214607	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs11214607-?	NR	2E-9		0.01928	[0.013-0.026] unit increase	Affymetrix [10847151] (imputed)	N
1449	chr11	113316101	113316102	rs11214609	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	11q23.2	DRD2	rs11214609-G	0.395	4E-9		1.06	[1.04-1.08]	Affymetrix [11141077] (imputed)	N
1449	chr11	113317744	113317745	rs17601612	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	11q23.2	DRD2	rs17601612-?	NR	5E-7		0.053	[0.031-0.075] unit increase	NR [7682250] (imputed)	N
1449	chr11	113317744	113317745	rs17601612	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11q23.2	DRD2	rs17601612-C	0.3828	2E-13		0.016807118	[0.012-0.021] unit decrease	Affymetrix [11514936] (imputed)	N
1449	chr11	113317744	113317745	rs17601612	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	11q23.2	DRD2	rs17601612-C	NR	5E-7		0.014	[0.0062-0.0218] unit decrease	Affymetrix [up to 73355677] (imputed)	N
1449	chr11	113318006	113318007	rs4245147	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls	958 Han Chinese ancestry cases, 2,050 Han Chinese ancestry controls	11q23.2	DRD2	rs4245147-C	0.161	4E-7		0.789	[0.720-0.865]	Illumina [4499546] (imputed)	N
1449	chr11	113345668	113345669	rs79092434	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q23.2	DRD2	rs79092434-?		3E-6				Illumina [4322238] (imputed)	N
1449	chr11	113355443	113355444	rs7121986	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	11q23.2	DRD2	rs7121986-T	0.37	6E-14		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1449	chr11	113355735	113355736	rs6589377	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs6589377-A	0.626768788198988	4E-26		0.016052796	[0.013-0.019] unit increase	NR [NR]	N
1449	chr11	113355735	113355736	rs6589377	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs6589377-A	0.626768788198988	5E-26		0.010243935	[0.0083-0.0121] unit increase	NR [NR]	N
1449	chr11	113357710	113357714	rs138084129	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	11q23.2	DRD2	rs138084129-A	0.6274	5E-15		7.824	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1449	chr11	113358210	113358211	rs4482060	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs4482060-?	NR	5E-9				NR [NR]	N
1449	chr11	113358210	113358211	rs4482060	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs4482060-?	NR	3E-9				NR [NR]	N
1449	chr11	113358210	113358211	rs4482060	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs4482060-?	NR	9E-9				NR [NR]	N
1449	chr11	113358210	113358211	rs4482060	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs4482060-?	NR	2E-9				NR [NR]	N
1449	chr11	113359118	113359119	rs77648771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs77648771-T	0.0494545735124518	5E-10		0.013159692	[0.009-0.0173] unit increase	NR [NR]	N
1449	chr11	113359118	113359119	rs77648771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs77648771-T	0.0494545735124518	8E-10		0.01605108	[0.011-0.021] unit increase	NR [NR]	N
1449	chr11	113359118	113359119	rs77648771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs77648771-T	0.0494545735124518	5E-10		0.020949543	[0.014-0.028] unit increase	NR [NR]	N
1449	chr11	113359118	113359119	rs77648771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs77648771-T	0.0494545735124518	6E-10		0.013359486	[0.0091-0.0176] unit increase	NR [NR]	N
1449	chr11	113364646	113364647	rs4245150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q23.2		rs4245150-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1449	chr11	113364646	113364647	rs4245150	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	11q23.2	NR	rs4245150-G	NR	1E-9		0.01484	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1449	chr11	113364690	113364691	rs17602038	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	11q23.2	DRD2	rs17602038-T	0.3618	1E-22		0.022867732	[0.018-0.028] unit increase	NR [9417325] (imputed)	N
1449	chr11	113364690	113364691	rs17602038	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs mixed)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 110,403 European ancestry mixed smokers, 23,605 African American mixed smokers, 11,221 Hispanic mixed smokers	NA	11q23.2	DRD2, TMPRSS5	rs17602038-T		3E-11		1.057	[NR]	Affymetrix [~ 79000000] (imputed)	N
1449	chr11	113364690	113364691	rs17602038	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11q23.2	NR	rs17602038-C	0.3734	9E-21		0.019764803	[0.016-0.024] unit decrease	Affymetrix [10613246] (imputed)	N
1449	chr11	113364690	113364691	rs17602038	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11q23.2	NR	rs17602038-C	0.349	3E-19		0.01614164	[0.013-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1449	chr11	113364802	113364803	rs4938021	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs4938021-T	0.626890540950183	3E-26		0.010079761	[0.0082-0.0119] unit increase	NR [NR]	N
1449	chr11	113364802	113364803	rs4938021	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	11q23.2	NR	rs4938021-C	0.3798	8E-13		0.0209	[0.015-0.027] unit decrease	Illumina [NR] (imputed)	N
1449	chr11	113364802	113364803	rs4938021	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	11q23.2	NR	rs4938021-C	0.3798	5E-10		0.023	[0.016-0.03] unit decrease	Illumina [NR] (imputed)	N
1449	chr11	113364802	113364803	rs4938021	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q23.2	NR	rs4938021-T	0.62919	1E-14		0.043089	[0.032-0.054] unit increase	Illumina [18485882] (imputed)	N
1449	chr11	113364802	113364803	rs4938021	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11q23.2	DRD2	rs4938021-T	0.656	4E-10		0.02327652	[0.016-0.031] unit increase	Affymetrix [up to 6544775] (imputed)	N
1449	chr11	113365083	113365084	rs4936275	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	11q23.2	NR	rs4936275-T	0.622	5E-12		0.02923658	[0.021-0.038] unit increase	NR [NR]	N
1449	chr11	113365083	113365084	rs4936275	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q23.2	NR	rs4936275-T	0.6217	1E-7		0.0065	[0.0041-0.0089] unit increase	NR [7666894] (imputed)	N
1449	chr11	113370757	113370758	rs61902811	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11q23.2		rs61902811-?	NR	7E-28		0.0304	unit decrease	NR [NR]	N
1449	chr11	113370757	113370758	rs61902811	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q23.2	NR	rs61902811-G	0.6318	4E-39		1.0288066	[1.02-1.03]	NR [8098588] (imputed)	N
1449	chr11	113374012	113374013	rs10891564	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs10891564-?	NR	2E-9		0.01424	[0.0096-0.0189] unit increase	Affymetrix [10847151] (imputed)	N
1449	chr11	113374419	113374420	rs61902812	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	11q23.2	DRD2, TMPRSS5	rs61902812-C		2E-8		1.057	[NR]	Affymetrix [up to 79000000] (imputed)	N
1449	chr11	113374419	113374420	rs61902812	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	11q23.2	DRD2	rs61902812-A	0.306	2E-8		5.59	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
1449	chr11	113374566	113374567	rs6589379	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q23.2	NR	rs6589379-T	0.638	6E-11		0.00898363	[0.0063-0.0117] unit increase	NR [~ 9732723] (imputed)	N
1449	chr11	113374683	113374684	rs11214629	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs11214629-C	NR	3E-9		0.010304	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
1449	chr11	113374683	113374684	rs11214629	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs11214629-T	NR	3E-11		6.629	z score increase	Affymetrix [10847151] (imputed)	N
1450	chr11	113377487	113377488	rs7111031	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	11q23.2	DRD2	rs7111031-C	0.3588	1E-38		0.030268671	[0.025-0.036] unit decrease	NR [9417325] (imputed)	N
1450	chr11	113377487	113377488	rs7111031	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q23.2	NR	rs7111031-?		2E-9				NR [520857]	N
1450	chr11	113377487	113377488	rs7111031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs7111031-A	0.636355357473002	3E-24		0.012320721	[0.0099-0.0147] unit increase	NR [NR]	N
1450	chr11	113377487	113377488	rs7111031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs7111031-A	NR	3E-17		8.456	z score increase	Affymetrix [10847151] (imputed)	N
1450	chr11	113377487	113377488	rs7111031	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	11q23.2	NR	rs7111031-C	0.363	3E-9		0.0115	[0.0078-0.0152] unit increase	Illumina [NR] (imputed)	N
1450	chr11	113377487	113377488	rs7111031	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	11q23.2	NR	rs7111031-C	0.3685	5E-11		0.0145	[0.01-0.019] unit decrease	Illumina [NR] (imputed)	N
1450	chr11	113377487	113377488	rs7111031	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q23.2	DRD2	rs7111031-A	0.63974	2E-18		8.773	z score increase	Illumina [18485882] (imputed)	N
1450	chr11	113378951	113378952	rs6589381	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs6589381-?	NR	2E-9				NR [NR]	N
1450	chr11	113381831	113381832	rs7949802	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs7949802-T	0.428033039255304	6E-15		0.011424591	[0.0086-0.0143] unit decrease	NR [NR]	N
1450	chr11	113386042	113386043	rs4534613	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs4534613-A	NR	7E-14		0.013043	[0.0096-0.0165] unit decrease	Affymetrix [18485882] (imputed)	N
1450	chr11	113386346	113386347	rs35738585	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	11q23.2	NR	rs35738585-G	0.4334	4E-16		0.01561	[0.012-0.019] unit decrease	NR [8968716] (imputed)	N
1450	chr11	113386346	113386347	rs35738585	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	11q23.2	NR	rs35738585-G	NR	5E-16		0.01911	NR unit decrease	NR [7259579]	N
1450	chr11	113386346	113386347	rs35738585	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs35738585-?	NR	2E-13		0.01722	[0.013-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113388673	113388674	rs4245154	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	11q23.2	DRD2	rs4245154-?	NR	9E-9				Affymetrix [up to 9327396] (imputed)	N
1450	chr11	113388673	113388674	rs4245154	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	11q23.2	DRD2	rs4245154-G	NR	7E-9		0.01236	unit increase	Affymetrix [9327396] (imputed)	N
1450	chr11	113388673	113388674	rs4245154	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	11q23.2	NR	rs4245154-A	0.431123	4E-9		5.87	z score increase	NR [10847151] (imputed)	N
1450	chr11	113388673	113388674	rs4245154	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q23.2	TTC12	rs4245154-A	0.431123	4E-17		8.42	z score increase	NR [10847151] (imputed)	N
1450	chr11	113388673	113388674	rs4245154	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	11q23.2	TTC12	rs4245154-A	0.431123	6E-10		6.19	z score increase	NR [10847151] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	11q23.2		rs2514218-?	NR	7E-9		0.0174	NR unit decrease	NR [4484088] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	11q23.2	NR	rs2514218-T	0.3519	1E-11		0.07893311	[0.056-0.102] unit decrease	NR [NR]	N
1450	chr11	113392993	113392994	rs2514218	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	11q23.2	NR	rs2514218-T	NR	1E-9		6.072	NR z score decrease	NR [NR]	N
1450	chr11	113392993	113392994	rs2514218	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	11q23.2	NR	rs2514218-T	0.3519	2E-10		0.07235493	[0.05-0.095] unit decrease	NR [NR]	N
1450	chr11	113392993	113392994	rs2514218	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11q23.2	NR	rs2514218-?		7E-11				NR [8377093]	N
1450	chr11	113392993	113392994	rs2514218	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11q23.2	NR	rs2514218-?		3E-8				NR [8377093]	N
1450	chr11	113392993	113392994	rs2514218	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	11q23.2	NR	rs2514218-?		5E-9				NR [520857]	N
1450	chr11	113392993	113392994	rs2514218	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	11q23.2	NR	rs2514218-C	NR	3E-10		1.0309278		NR [NR] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q23.2	DRD2	rs2514218-?		2E-11				NR [6786993] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q23.2	NR	rs2514218-?	NR	2E-11		1.0771335	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q23.2	DRD2	rs2514218-?	NR	2E-9		0.012419877	[0.0083-0.0165] unit increase	NR [7306098]	N
1450	chr11	113392993	113392994	rs2514218	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q23.2	NR	rs2514218-?	NR	9E-10				Illumina [up to 5582932] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q23.2	DRD2	rs2514218-C	NR	5E-10	(EA)	1.075	[1.05-1.1]	Illumina [6627481] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q23.2	DRD2	rs2514218-C	NR	1E-10		1.0752687	[1.05-1.1]	Illumina [6627481] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11q23.2	DRD2, MIR4301	rs2514218-?	NR	2E-12		1.0905125	[1.07-1.11]	Illumina [8000000] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q23.2	DRD2	rs2514218-C	NR	5E-11		1.0775862	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q23.2	NR	rs2514218-C	NR	2E-10		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1450	chr11	113392993	113392994	rs2514218	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q23.2	DRD2	rs2514218-C	0.686	3E-11		1.0787487	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
1450	chr11	113394034	113394035	rs12420205	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs12420205-?	NR	7E-11		0.01631	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113394034	113394035	rs12420205	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	11q23.2	TTC12	rs12420205-T	0.322495	2E-9		5.98	z score increase	NR [10847151] (imputed)	N
1450	chr11	113394034	113394035	rs12420205	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	11q23.2	ANKK1	rs12420205-T	0.322495	5E-11		6.58	z score increase	NR [10847151] (imputed)	N
1450	chr11	113395328	113395329	rs2514214	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q23.2	DRD2, TMPRSS5	rs2514214-A	0.2691	2E-9		1.0273678		Affymetrix [11880941] (imputed)	N
1450	chr11	113400593	113400594	rs192035988	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		11q23.2	intergenic	rs192035988-A	0.0129006	3E-6		2.12931	[1.25-3.01] unit increase	Illumina [640625] (imputed)	N
1450	chr11	113404327	113404328	rs2514226	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs2514226-C	0.746932108673959	2E-10		0.008975896	[0.0062-0.0117] unit decrease	NR [NR]	N
1450	chr11	113407113	113407114	rs3133388	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	11q23.2		rs3133388-?	NR	3E-8				NR [NR]	N
1450	chr11	113407113	113407114	rs3133388	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	11q23.2	DRD2, TMPRSS5	rs3133388-G		6E-12		1.07	[NR]	Affymetrix [~ 79000000] (imputed)	N
1450	chr11	113412442	113412443	rs4309187	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	11q23.2		rs4309187-?	NR	5E-11				NR [2625067]	N
1450	chr11	113412442	113412443	rs4309187	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	11q23.2		rs4309187-?	NR	1E-8				NR [2625067]	N
1450	chr11	113412442	113412443	rs4309187	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	11q23.2	intergenic	rs4309187-?	NR	6E-14		0.00929018	[0.0069-0.0117] unit decrease	Affymetrix [NR] (imputed)	N
1450	chr11	113412442	113412443	rs4309187	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs4309187-A	NR	4E-12		0.01206	[0.0087-0.0155] unit increase	Affymetrix [18485882] (imputed)	N
1450	chr11	113412442	113412443	rs4309187	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	11q23.2	DRD2	rs4309187-C	0.684	1E-11		0.0185	[0.013-0.024] unit increase	Illumina [~ 250000] (imputed)	N
1450	chr11	113412442	113412443	rs4309187	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q23.2	NR	rs4309187-?	NR	2E-8				Illumina [7760689] (imputed)	N
1450	chr11	113412442	113412443	rs4309187	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q23.2	DRD2, MIR4301	rs4309187-?		5E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1450	chr11	113416095	113416096	rs7937477	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs7937477-A	NR	3E-10		0.010915	[0.0075-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
1450	chr11	113416095	113416096	rs7937477	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs7937477-A	NR	1E-8		5.69	z score decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113416095	113416096	rs7937477	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs7937477-?	NR	1E-8		0.01326	[0.0087-0.0178] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113418221	113418222	rs10736469	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs10736469-A	NR	2E-10		6.404	z score increase	Affymetrix [10847151] (imputed)	N
1450	chr11	113424041	113424042	rs10750025	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	11q23.2	DRD2	rs10750025-C	NR	2E-10		0.00864861	[0.006-0.0113] unit increase	Affymetrix [10061374] (imputed)	N
1450	chr11	113424041	113424042	rs10750025	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11q23.2	NR	rs10750025-T	0.686	5E-11		0.010321447	[0.0072-0.0134] unit increase	NR [~ 10000000] (imputed)	N
1450	chr11	113424557	113424558	rs7952106	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs7952106-T	NR	1E-8		5.705	z score increase	Affymetrix [10847151] (imputed)	N
1450	chr11	113424557	113424558	rs7952106	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	11q23.2	DRD2, MIR4301	rs7952106-G	0.23	9E-7		1.54	[0.93-2.15] mmHg increase	Illumina [1019297] (imputed)	N
1450	chr11	113425467	113425468	rs7927693	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs7927693-G	NR	3E-9		0.010359	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
1450	chr11	113425467	113425468	rs7927693	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs7927693-?	NR	9E-9		0.01361	[0.009-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113430485	113430486	rs4373974	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs4373974-T	NR	2E-8		0.009777	[0.0064-0.0132] unit decrease	Affymetrix [18485882] (imputed)	N
1450	chr11	113430485	113430486	rs4373974	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs4373974-T	NR	3E-10		6.325	z score increase	Affymetrix [10847151] (imputed)	N
1450	chr11	113430485	113430486	rs4373974	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs4373974-?	NR	2E-8		0.01295	[0.0084-0.0175] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113431959	113431960	rs4936277	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	11q23.2	DRD2	rs4936277-A	0.4225	2E-7		0.011872505	[0.0067-0.017] unit increase	NR [9417325] (imputed)	N
1450	chr11	113431959	113431960	rs4936277	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	11q23.2	DRD2	rs4936277-A	0.599	1E-13		7.44	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1450	chr11	113431959	113431960	rs4936277	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	11q23.2	DRD2	rs4936277-A	0.56	3E-11	(EA)	1.059	[1.04-1.08]	Affymetrix [up to 12500000] (imputed)	N
1450	chr11	113431959	113431960	rs4936277	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q23.2	DRD2	rs4936277-A	NR	3E-12		0.01213	[0.0087-0.0155] unit decrease	Affymetrix [18485882] (imputed)	N
1450	chr11	113431959	113431960	rs4936277	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs4936277-G	0.449197709831314	9E-10		0.011240615	[0.0076-0.0148] unit decrease	NR [NR]	N
1450	chr11	113431959	113431960	rs4936277	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs4936277-G	0.449197709831314	2E-9		0.006741934	[0.0045-0.0089] unit decrease	NR [NR]	N
1450	chr11	113431959	113431960	rs4936277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.2	Intergenic	rs4936277-A	0.5526	7E-12	(MTAG)	0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1450	chr11	113436071	113436072	rs7125588	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	11q23.2	DRD2	rs7125588-A	0.4085	6E-22		0.02180209	[0.017-0.027] unit increase	NR [9417325] (imputed)	N
1450	chr11	113436071	113436072	rs7125588	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	11q23.2	NR	rs7125588-G	0.429	7E-12		0.01689971	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1450	chr11	113436071	113436072	rs7125588	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	11q23.2	NR	rs7125588-G	0.429	1E-12		0.0157092	[0.011-0.02] unit decrease	NR [9732723] (imputed)	N
1450	chr11	113437073	113437074	rs12791990	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.2	NR	rs12791990-C	0.140787288146435	7E-9		0.0095399	[0.0063-0.0128] unit increase	NR [NR]	N
1450	chr11	113437073	113437074	rs12791990	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q23.2	NR	rs12791990-C	0.140787288146435	2E-8		0.010190955	[0.0066-0.0138] unit increase	NR [NR]	N
1450	chr11	113438091	113438092	rs61687445	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs61687445-A	0.437298403206203	2E-13		0.006787939	[0.005-0.0086] unit decrease	NR [NR]	N
1450	chr11	113438091	113438092	rs61687445	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q23.2	NR	rs61687445-A	NR	2E-13		7.361	z score decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113438091	113438092	rs61687445	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q23.2	NR	rs61687445-?	NR	4E-10		0.01464	[0.01-0.019] unit decrease	Affymetrix [10847151] (imputed)	N
1450	chr11	113442124	113442125	rs77414181	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.2	NR	rs77414181-A	0.0815179841538595	2E-8		0.009404164	[0.0061-0.0127] unit increase	NR [NR]	N
1450	chr11	113442124	113442125	rs77414181	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.2	NR	rs77414181-A	0.0815179841538595	1E-8		0.015160353	[0.0099-0.0204] unit increase	NR [NR]	N
1450	chr11	113442124	113442125	rs77414181	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.2	NR	rs77414181-A	0.0815179841538595	2E-8		0.009681166	[0.0063-0.013] unit increase	NR [NR]	N
1450	chr11	113443752	113443753	rs6589386	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11q23.2	NR	rs6589386-T	0.4323	3E-18		0.018040625	[0.014-0.022] unit decrease	Affymetrix [10613246] (imputed)	N
1450	chr11	113443752	113443753	rs6589386	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	11q23.2	NR	rs6589386-T	0.4238	7E-12		6.856	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1450	chr11	113448761	113448762	rs7928017	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.2		rs7928017-A	0.4341	1E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1450	chr11	113451764	113451765	rs7940164	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q23.2		rs7940164-T	0.66577	1E-6		0.034883	[0.021-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
1450	chr11	113451764	113451765	rs7940164	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	11q23.2		rs7940164-?	NR	1E-11		0.019	unit decrease	NR [NR]	N
1450	chr11	113464658	113464659	rs7128800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q23.2	NR	rs7128800-T	NR	5E-9		0.0212	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1450	chr11	113482963	113482964	rs58257470	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11q23.2	NR	rs58257470-T	0.2739	9E-11		0.015010054	[0.01-0.02] unit increase	Affymetrix [10613246] (imputed)	N
1451	chr11	113517202	113517203	rs61904987	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	11q23.2	TMPRSS5	rs61904987-T	0.12	2E-11		1.24	[1.16-1.32]	Affymetrix, Illumina [> 10000000] (imputed)	N
1451	chr11	113539079	113539080	rs3934007	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	11q23.2	TMPRSS5, DRD2	rs3934007-T	NR	3E-6	(EA)	1.55	[1.19-2.00]	Illumina [291943]	N
1451	chr11	113551341	113551343	rs147965179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q23.2		rs147965179-A	NR	2E-8		0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1451	chr11	113561056	113561057	rs7110738	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	11q23.2	TMPRSS5	rs7110738-A	0.3769	1E-43	(TMPRSS5)	0.74661	[0.64-0.85] unit decrease	Illumina [8683751] (imputed)	N
1451	chr11	113566206	113566207	rs4936279	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	11q23.2	TMPRSS5	rs4936279-?	NR	3E-10		6.33	NR z score increase	Illumina [8500000] (imputed)	N
1451	chr11	113567346	113567347	rs45445396	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	11q23.2	TMPRSS5	rs45445396-A	0.9968	2E-6		0.3391	[0.2-0.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1451	chr11	113568095	113568096	rs7939917	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	11q23.2	TMPRSS5	rs7939917-?	NR	4E-7	(African)			Illumina [4404269] (imputed)	N
1451	chr11	113568095	113568096	rs7939917	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	11q23.2	TMPRSS5	rs7939917-T	0.03354	5E-8	(African)			Illumina [4404269] (imputed)	N
1451	chr11	113577990	113577990	rs45543538	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q23.2	USP28	rs45543538-?	NR	2E-8		0.0309	[-0.03613-0.09793] unit decrease	Affymetrix [5701386] (imputed)	N
1451	chr11	113620209	113620210	rs73007975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.2	Intergenic	rs73007975-A	0.2109	3E-9	(MTAG)	0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1451	chr11	113638176	113638177	rs17613838	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11q23.2	NR	rs17613838-C	0.161	5E-11		0.015382202	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
1452	chr11	113639841	113639842	rs61905747	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	11q23.2	ZW10	rs61905747-A	0.8167	4E-10				NR [7320282]	N
1452	chr11	113639841	113639842	rs61905747	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	11q23.2	ZW10	rs61905747-A	0.809	6E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [11535925] (imputed)	N
1452	chr11	113654742	113654742	rs757634967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q23.2	NR	rs757634967-A	0.66135	2E-10		0.00558438	[0.0038-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1452	chr11	113654742	113654742	rs757634967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q23.2	NR	rs757634967-A	0.66135	3E-9		0.00591015	[0.0039-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
1452	chr11	113655695	113655696	rs17542254	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q23.2	NR	rs17542254-G	0.275	5E-11		0.0096932	[0.0068-0.0126] unit increase	NR [~ 9732723] (imputed)	N
1452	chr11	113660575	113660576	rs1713676	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.2	NR	rs1713676-G	0.523	4E-13		0.00783144	[0.0057-0.0099] unit decrease	NR [9732723] (imputed)	N
1452	chr11	113660575	113660576	rs1713676	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q23.2	NR	rs1713676-G	0.522512	5E-11	(Conditioned on chr11:113994505)	0.016726246	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1452	chr11	113660575	113660576	rs1713676	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11q23.2	NR	rs1713676-G	0.522454	4E-8	(Conditioned on chr11:113424042)	0.007991984	[0.0051-0.0109] unit decrease	NR [~ 10000000] (imputed)	N
1452	chr11	113661348	113661349	rs1713675	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11q23.2	USP28	rs1713675-A	0.5149	3E-8		0.012396359	[0.008-0.0168] unit decrease	Affymetrix [11514936] (imputed)	N
1452	chr11	113666334	113666335	rs144789148	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	11q23.2	USP28	rs144789148-G	0.05	6E-9		0.96	[0.63-1.29] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1452	chr11	113666334	113666335	rs144789148	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	11q23.2	USP28	rs144789148-G	0.0476	2E-9		1.0094	[0.68-1.34] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1452	chr11	113688896	113688898	rs151070658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q23.2		rs151070658-C	NR	3E-8		0.0198	[0.013-0.027] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1452	chr11	113700546	113700547	rs5794883	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q23.2	NR	rs5794883-C	NR	3E-18		1.069	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1452	chr11	113724639	113724640	rs35144767	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.2	Intergenic	rs35144767-A	0.7941	1E-8	(MTAG)	0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1452	chr11	113724672	113724673	rs7126080	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q23.2		rs7126080-G	0.46	1E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1452	chr11	113734381	113734382	rs71063528	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q23.2	NR	rs71063528-C	0.7244	8E-7	(EA)	0.0381	[0.023-0.053] unit increase	Illumina [~ 11800000] (imputed)	N
1452	chr11	113737665	113737666	rs147411380	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q23.2		rs147411380-T	0.01241	4E-6		3.069	[1.904-4.948]	Affymetrix [7975321] (imputed)	N
1453	chr11	113807180	113807181	rs11214775	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	11q23.2	HTR3A/B	rs11214775-?		3E-11				Illumina [5041948] (imputed)	N
1453	chr11	113807180	113807181	rs11214775	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q23.2	NR	rs11214775-G	0.71	4E-15		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
1453	chr11	113807180	113807181	rs11214775	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	11q23.2	HTR3B	rs11214775-G	0.71	5E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1453	chr11	113807180	113807181	rs11214775	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	11q23.2	HTR3B	rs11214775-G	0.71	3E-8	(EA)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1453	chr11	113818506	113818507	rs45603544	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q23.2	HTR3B	rs45603544-T	0.0252053062553642	2E-6	(O_Rhodospirillales_RNT)	0.528377	[0.31-0.75] unit decrease	Illumina [7711310] (imputed)	N
1453	chr11	113818751	113818752	rs7129190	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Chronic kidney disease	658 European ancestry child cases, 1,347 European ancestry child controls	NA	11q23.2	HTR3B, HTR3A	rs7129190-?	0.47	5E-6		1.41	[1.20-1.61]	Illumina [~ 8300000] (imputed)	N
1453	chr11	113820027	113820028	rs118162387	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q23.2	NR	rs118162387-G	NR	9E-6		1.1627907	[NR]	Illumina [7158791] (imputed)	N
1453	chr11	113820110	113820111	rs117180731	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q23.2	HTR3B	rs117180731-T	0.0255308169464941	3E-6	(F_Rhodospirillaceae_RNT)	0.528233	[0.31-0.75] unit decrease	Illumina [7711310] (imputed)	N
1453	chr11	113838583	113838584	rs187806642	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	11q23.2		rs187806642-A	0.01128	5E-6		3.117	[1.91-5.088]	Affymetrix [7975321] (imputed)	N
1453	chr11	113848453	113848454	rs182799368	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	987 African American or Afro-Caribbean men	NA	11q23.2		rs182799368-T	0.016	2E-7		9.19	kg decrease	NR [638486]	N
1453	chr11	113848453	113848454	rs182799368	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	4878 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry men	NA	11q23.2		rs182799368-T	0.003	1E-8		9.18	kg decrease	NR [638486]	N
1453	chr11	113848901	113848902	rs56376240	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.2	HTR3A	rs56376240-A	NR	7E-8		1.0851872	NR	Affymetrix, Illumina [8278136] (imputed)	N
1454	chr11	113924446	113924447	rs75081203	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	11q23.2		rs75081203-?	NR	8E-7		1.524	[1.289-1.802]	Affymetrix [7975321] (imputed)	N
1454	chr11	113942150	113942151	rs1672691	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11q23.2	ZBTB16, HTR3A, NNMT	rs1672691-A	0.2	2E-7		2.5	[1.76-3.55]	Illumina [1556551]	N
1454	chr11	113949231	113949232	rs1784692	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	11q23.2	ZBTB16	rs1784692-T	0.82	2E-10		0.1438	[0.1-0.188] unit increase	Illumina [> 10000000] (imputed)	N
1454	chr11	113949231	113949232	rs1784692	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	11q23.2	ZBTB16	rs1784692-T	0.82	1E-6		1.39	[1.19-1.61]	Illumina [at least 624044] (imputed)	N
1454	chr11	113952496	113952497	rs1672716	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	11q23.2	ZBTB16	rs1672716-G	0.1451	1E-8		0.81	[0.76-0.87]	NR [24154061] (imputed)	N
1454	chr11	113952496	113952497	rs1672716	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age and BMI)	482 European ancestry cases, 91,631 European ancestry controls	2,137 European ancestry cases, 68,690 European ancestry controls	11q23.2	ZBTB16	rs1672716-G	0.1451	5E-7		0.8	[0.74-0.87]	NR [24481103] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q23.2		rs73000929-A	NR	3E-59		0.0987	[0.087-0.111] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q23.2		rs73000929-G	0.963	5E-21				Affymetrix [10369434] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.2		rs73000929-G	0.963	5E-33				Affymetrix [10369434] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.036428	2E-23		0.05967892	[0.048-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.036432	9E-50		0.089812495	[0.078-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.036442	3E-43		0.08344547	[0.072-0.095] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000929-A	0.0334422	1E-72				Affymetrix, Illumina [24588908] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q23.2	NR	rs73000929-A	0.034864	2E-75		0.092954	[0.083-0.103] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000929-G	0.965262	2E-69				Affymetrix, Illumina [17210439] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q23.2	NR	rs73000929-G	0.96384	4E-72		0.092807	[0.083-0.103] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.0373	1E-9		0.0597131	[0.04-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.0374	6E-21		0.09191479	[0.073-0.111] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113953621	113953622	rs73000929	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q23.2	ZBTB16	rs73000929-A	0.0374	8E-18		0.08359863	[0.065-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113955302	113955303	rs2606725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs2606725-G	0.470465	7E-11				Affymetrix, Illumina [19905671] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q23.2	NR	rs2846630-A	0.451067	8E-13		0.013888	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.453	3E-10		0.02367011	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4529	2E-12		0.0264614	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4529	9E-13		0.02681876	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4529	1E-12		0.02675765	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4528	2E-10		0.02398292	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4528	2E-20		0.03465779	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4528	8E-22		0.03588733	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113957196	113957197	rs2846630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q23.2	ZBTB16	rs2846630-A	0.4529	1E-12		0.0266233	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453542	1E-28		0.024716966	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453546	2E-21		0.021225272	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453503	3E-37		0.028418541	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453422	3E-51		0.033596847	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453454	1E-10		0.014360841	[0.01-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958143	rs35092495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q23.2	ZBTB16	rs35092495-G	0.453561	2E-14		0.017165037	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113958142	113958142	rs745502811	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q23.2	NR	rs745502811-D	0.453013	6E-14		0.016037	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1454	chr11	113961761	113961762	rs17116334	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	11q23.2	ZBTB16	rs17116334-T	0.16	9E-6	(maternal criticism)	1.3	[NR] unit increase	Perlegen [429901]	N
1454	chr11	113975346	113975347	rs238925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q23.2	ZBTB16	rs238925-T	0.40559	2E-12		0.015983412	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113975346	113975347	rs238925	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q23.2	NR	rs238925-T	0.398	1E-8		0.00849747	[0.0056-0.0114] unit increase	NR [9732723] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q23.2		rs17116384-A	0.681	5E-18				Affymetrix [10369434] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.2		rs17116384-A	0.681	6E-14				Affymetrix [10369434] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.318886	8E-17		0.019792344	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.318999	1E-13		0.017768022	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.318996	7E-17		0.020179696	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.318829	3E-21		0.0234889	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.318832	9E-22		0.022797426	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.31893	3E-11		0.015920388	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q23.2	NR	rs17116384-G	0.316833	8E-29		0.021922	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q23.2	NR	rs17116384-G	0.318359	3E-27		0.022543	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q23.2		rs17116384-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q23.2		rs17116384-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1454	chr11	113981240	113981241	rs17116384	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q23.2	ZBTB16	rs17116384-G	0.3189	3E-13		0.02840606	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q23.2		rs73000965-A	NR	3E-18		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q23.2		rs73000965-A	NR	4E-24		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11q23.2		rs73000965-A	0.251624	1E-10		0.0267138	[0.019-0.035] unit decrease	Illumina [13476266] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q23.2		rs73000965-A	NR	5E-25		0.0225	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.2	ZBTB16	rs73000965-A	0.316672	2E-10		0.015600079	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.2	ZBTB16	rs73000965-A	0.316695	2E-15		0.019499172	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.296945	2E-49				Affymetrix, Illumina [24649327] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.314788	2E-47		0.028768	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.297087	2E-21				Affymetrix, Illumina [24332387] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.315153	1E-20		0.018663	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.301984	1E-44				Affymetrix, Illumina [23114412] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.315728	7E-45		0.029201	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.298674	9E-33				Affymetrix, Illumina [24246363] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs73000965-A	0.298807	2E-28				Affymetrix, Illumina [20825802] (imputed)	N
1454	chr11	113982320	113982321	rs73000965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.2	ZBTB16	rs73000965-A	0.3179	9E-13		0.02813931	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q23.2	ZBTB16	rs238914-A	0.39588	3E-41		0.030527718	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113984108	113984109	rs238914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q23.2	ZBTB16	rs238914-A	0.395897	3E-40		0.03020453	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	113984108	113984109	rs238914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q23.2	NR	rs238914-A	0.39429	2E-10		0.012328	[0.0085-0.0161] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	3E-10		0.02325923	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	2E-12		0.02592514	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	1E-12		0.02619009	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	9E-13		0.02624385	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	6E-12		0.0254177	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984108	113984109	rs238914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q23.2	ZBTB16	rs238914-A	0.3967	2E-12		0.02588001	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr11	113984488	113984489	rs238913	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	11q23.2		rs238913-A	0.604	6E-15				Affymetrix [10369434] (imputed)	N
1454	chr11	113984488	113984489	rs238913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.2		rs238913-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1454	chr11	113986878	113986879	rs238910	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.2	NR	rs238910-G	0.401	6E-15		0.00858535	[0.0064-0.0107] unit decrease	NR [9732723] (imputed)	N
1454	chr11	113987255	113987256	rs1630468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q23.2		rs1630468-G	NR	3E-28		0.0219	[0.018-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1454	chr11	113987255	113987256	rs1630468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q23.2		rs1630468-G	NR	3E-29		0.0242	[0.02-0.029] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1454	chr11	113990716	113990717	rs238899	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q23.2		rs238899-T	0.458	3E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1454	chr11	113994504	113994505	rs238896	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	11q23.2	ZBTB16	rs238896-A		2E-8		0.981	[NR]	Affymetrix [up to 79000000] (imputed)	N
1454	chr11	113994504	113994505	rs238896	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q23.2	NR	rs238896-A	0.49	4E-11		0.016867377	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1454	chr11	114003414	114003415	rs2846027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.2	ZBTB16	rs2846027-T	0.335065	2E-10		0.015076093	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr11	114009254	114009255	rs4936290	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11q23.2		rs4936290-A	0.6508	1E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1454	chr11	114009254	114009255	rs4936290	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q23.2	ZBTB16	rs4936290-C	0.3416	1E-10		1.0231643		Affymetrix [11880941] (imputed)	N
1454	chr11	114009407	114009408	rs3214101	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	11q23.2	ZBTB16	rs3214101-A	0.68	4E-6		1.08	[1.05-1.12]	NR [~ 55000000] (imputed)	N
1454	chr11	114009981	114009982	rs4936291	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q23.2		rs4936291-A	0.611	4E-17		0.1	[0.07-0.12] % increase	Affymetrix [NR] (imputed)	N
1454	chr11	114011664	114011665	rs10891630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q23.2		rs10891630-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1454	chr11	114023572	114023573	rs7117576	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcus1 id.11373)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	11q23.2		rs7117576-A	NR	6E-7		4.97634	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr11	114025966	114025967	rs527493184	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	11q23.2	ZBTB16	rs527493184-A	0.002	1E-8		1.029	[0.68-1.38] unit increase	Illumina [32241096] (imputed)	N
1454	chr11	114027276	114027277	rs17116545	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	11q23.2	NR	rs17116545-G	NR	5E-6		0.2246	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
1454	chr11	114030798	114030799	rs648044	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q23.2	NR	rs648044-A	0.3967	6E-9				NR [9056863] (imputed)	N
1454	chr11	114030798	114030799	rs648044	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	11q23.2	NR	rs648044-?		1E-9		0.013834	[0.0094-0.0183] unit decrease	Affymetrix [19400418] (imputed)	N
1454	chr11	114030798	114030799	rs648044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.2		rs648044-A	0.3892	9E-9		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1454	chr11	114030798	114030799	rs648044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.2	Intergenic	rs648044-A	0.3892	2E-8	(MTAG)	0.0076	[0.0049-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr11	114030798	114030799	rs648044	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	11q23.2	ZBTB16	rs648044-A	0.39	5E-12		1.19	1.13-1.25	Illumina [at least 6769856] (imputed)	N
1454	chr11	114030798	114030799	rs648044	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	11q23.2	ZBTB16	rs648044-T	0.38	6E-11		1.25	[1.17-1.34]	Illumina [at least 8427548] (imputed)	N
1454	chr11	114031091	114031092	rs636406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q23.2		rs636406-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1454	chr11	114032483	114032484	rs665731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q23.2		rs665731-T	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1454	chr11	114032483	114032484	rs665731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q23.2	NR	rs665731-T	NR	3E-9		0.0182	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr11	114032483	114032484	rs665731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q23.2	NR	rs665731-T	0.190145	3E-9		0.00844366	[0.0055-0.0114] unit increase	Affymetrix [16582621] (imputed)	N
1454	chr11	114032591	114032592	rs513249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q23.2		rs513249-A	NR	4E-8		0.013	[0.0083-0.0177] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1454	chr11	114032591	114032592	rs513249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.2		rs513249-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1455	chr11	114037060	114037061	rs1184748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q23.2		rs1184748-G	NR	2E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1455	chr11	114040393	114040394	rs77669868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.2	ZBTB16	rs77669868-G	0.169685	4E-20		0.02728328	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr11	114040393	114040394	rs77669868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.2	ZBTB16	rs77669868-G	0.169686	2E-11		0.019913055	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr11	114040393	114040394	rs77669868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.2	NR	rs77669868-G	0.192877	2E-13				Affymetrix, Illumina [23467995] (imputed)	N
1455	chr11	114040393	114040394	rs77669868	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11q23.2	ZBTB16	rs77669868-G	0.1717	9E-10		0.02964656	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1455	chr11	114044438	114044439	rs585287	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	11q23.2	NR	rs585287-A		7E-7				NR [525577]	N
1455	chr11	114064824	114064825	rs629922	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	11q23.2	ZBTB16	rs629922-C	NR	3E-6		4.142	unit increase	Affymetrix [4198245] (imputed)	N
1455	chr11	114073199	114073200	rs3825045	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q23.2		rs3825045-T	0.17	5E-20		9.16	z score increase	Affymetrix [9061022] (imputed)	N
1455	chr11	114073199	114073200	rs3825045	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q23.2	NR	rs3825045-T	0.1671	1E-17				NR [9056863] (imputed)	N
1455	chr11	114080967	114080968	rs10789994	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q23.2		rs10789994-A	0.22	9E-25		10.28	z score increase	Affymetrix [9061022] (imputed)	N
1455	chr11	114088037	114088038	rs573195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.2	ZBTB16, RP11-64D24.2	rs573195-G	0.9233287	2E-16		0.03518351	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr11	114089103	114089104	rs454802	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q23.2		rs454802-T	0.42	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1455	chr11	114101353	114101353	rs143055445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.2	ZBTB16, RP11-64D24.2	rs143055445-TG	0.9129669	7E-16		0.033282936	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr11	114110366	114110367	rs77909890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.2	NR	rs77909890-A	0.02787	3E-9	(CCDC58)	0.009734	NR unit decrease	Illumina [1671387] (imputed)	N
1455	chr11	114122527	114122528	rs117407608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.2		rs117407608-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1456	chr11	114191015	114191016	rs2847476	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	11q23.2	NNMT	rs2847476-?	NR	3E-6	(ALLV)			Affymetrix [70897]	N
1456	chr11	114231254	114231255	rs11214966	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	11q23.2	C11orf71	rs11214966-?	NR	6E-7				Affymetrix, Illumina [> 2000000] (imputed)	N
1456	chr11	114235729	114235730	rs4938096	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	11q23.2	NNMT, C11orf71	rs4938096-T	0.21	1E-6	(African)	1.3	[1.17-1.44]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1457	chr11	114352248	114352249	rs11215010	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,365 Icelandic ancestry individuals	NA	11q23.2		rs11215010-C	0.1059	2E-25		0.317524	[0.26-0.38] unit decrease	Illumina [7506463] (imputed)	N
1457	chr11	114385998	114385999	rs12420560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN2	5,346 Icelandic ancestry individuals	NA	11q23.2		rs12420560-A	0.09874	4E-25		0.290775	[0.24-0.35] unit decrease	Illumina [7506463] (imputed)	N
1457	chr11	114386829	114386830	rs561722	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q23.2	NR	rs561722-G	0.66	4E-20	(EA)	1.1328671		Affymetrix, Illumina [~ 9000000] (imputed)	N
1457	chr11	114386829	114386830	rs561722	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q23.2	NR	rs561722-G	0.66	2E-9	(EA)	1.0666672		Affymetrix, Illumina [~ 9000000] (imputed)	N
1457	chr11	114386829	114386830	rs561722	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	11q23.2	NXPE1, NXPE4	rs561722-C	0.663	5E-17		1.12	[1.079-1.163]	Affymetrix, Illumina [1230000] (imputed)	N
1457	chr11	114387101	114387102	rs4466877	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q23.2	NR	rs4466877-G	0.880799535011136	9E-7	(IGP32)	0.2413	[0.15-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
1457	chr11	114390105	114390106	rs9326244	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q23.2	NR	rs9326244-C	0.878929753455194	5E-7	(IGP35)	0.237	[0.14-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1457	chr11	114391632	114391633	rs7103402	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	11q23.2	NR	rs7103402-?	NR	7E-11	(FCN2)	0.3	[0.2-0.4] unit decrease	Illumina [4020654] (imputed)	N
1457	chr11	114397162	114397162	rs200349593	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11q23.2	RBM7, REXO2, NXPE4, NXPE1, RP11-212D19.4	rs200349593-?		2E-9				Illumina [9578670] (imputed)	N
1457	chr11	114397162	114397162	rs200349593	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	11q23.2	RBM7, REXO2, NXPE4, NXPE1, RP11-212D19.4	rs200349593-?		2E-6				Illumina [9725440] (imputed)	N
1458	chr11	114430409	114430410	rs661054	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q23.2	NXPE1	rs661054-?	NR	2E-14	(subset analysis)			Illumina [130052]	N
1458	chr11	114430409	114430410	rs661054	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	11q23.2	NR	rs661054-?	NR	3E-20	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1458	chr11	114431955	114431956	rs678170	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	11q23.2	intergenic	rs678170-A	0.66	5E-14		1.09	[1.05-1.14]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1458	chr11	114437885	114437886	rs10891700	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.2	NXPE4	rs10891700-T	0.132	7E-29	(Ficolin-2, FCN2.3313.21.2)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1459	chr11	114579085	114579086	rs111310676	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	11q23.3	NR	rs111310676-?	NR	3E-6		1.4154564	[1.22-1.64]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1459	chr11	114621468	114621469	rs1712790	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Urinary albumin excretion	822 individuals	NA	11q23.3	FAM55B	rs1712790-?	NR	2E-6				Affymetrix [70897]	N
1459	chr11	114653846	114653847	rs7108229	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q23.3	NXPE2, CADM1	rs7108229-A	0.5725	6E-8		0.00929064	[0.0059-0.0126] unit increase	Affymetrix [11880941] (imputed)	N
1460	chr11	114692281	114692282	rs4436579	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	11q23.3	NXPE2	rs4436579-T	NR	7E-6		0.18	[0.1-0.26] unit increase	Illumina [5918868] (imputed)	N
1460	chr11	114726454	114726455	rs777110067	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q23.3	NXPE2	rs777110067-A	0.0013	5E-6		2.0665	[1.18-2.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1460	chr11	114758866	114758867	rs2462163	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	FAM55D	rs2462163-?	NR	5E-6	(LPE 16:0)	0.15837327	[0.09-0.226] unit increase	Affymetrix [at least 2500000] (imputed)	N
1461	chr11	114871318	114871319	rs61906997	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	11q23.3	NR	rs61906997-?	NR	2E-8	(Synergistia)	0.290536	[0.19-0.39] unit increase	Illumina [5293637] (imputed)	N
1461	chr11	114871318	114871319	rs61906997	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	11q23.3	NR	rs61906997-?	NR	2E-8	(Synergistaceae)	0.290536	[0.19-0.39] unit increase	Illumina [5293637] (imputed)	N
1461	chr11	114874418	114874419	rs61907000	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	11q23.3	NR	rs61907000-?	NR	2E-8	(Synergistales)	0.290536	[0.19-0.39] unit increase	Illumina [5293637] (imputed)	N
1461	chr11	114945868	114945869	rs2427667	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs2427667-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1462	chr11	115004009	115004010	rs7931589	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	11q23.3	NR	rs7931589-T	0.796356	1E-6		1.1415524	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q23.3	NA	rs12286929-A	0.5007	2E-27		0.0177	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11q23.3	NA	rs12286929-A	0.5007	2E-27		0.0177	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	11q23.3	NR	rs12286929-A	NR	6E-16		0.021	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11q23.3	FAM55B	rs12286929-A	0.4783	4E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	11q23.3	FAM55B	rs12286929-A	0.4783	3E-8		0.02	[0.013-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	11q23.3	FAM55B	rs12286929-A	0.4783	4E-8		0.0175	[0.011-0.024] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	11q23.3	NR	rs12286929-A	0.477081173735161	1E-11		0.018081361	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1462	chr11	115022403	115022404	rs12286929	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.3	CADM1	rs12286929-G	0.524	9E-8	(EA, women)	0.021	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1462	chr11	115022403	115022404	rs12286929	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.3	CADM1	rs12286929-G	0.523	5E-13		0.021	[0.015-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1462	chr11	115022403	115022404	rs12286929	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.3	CADM1	rs12286929-G	0.523	1E-12	(EA)	0.022	[0.016-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1462	chr11	115022403	115022404	rs12286929	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	11q23.3	CADM1	rs12286929-G	0.521	4E-8	(EA, men)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1462	chr11	115024689	115024690	rs72992070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q23.3		rs72992070-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1462	chr11	115037060	115037061	rs11607476	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q23.3	CADM1	rs11607476-A	0.51337	9E-13		0.00986565	[0.0072-0.0126] unit decrease	Affymetrix [12370749]	N
1462	chr11	115044361	115044361	rs5794958	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11q23.3	CADM1	rs5794958-?	NR	1E-9		0.031	[0.021-0.041] unit increase	Illumina [12039492]	N
1462	chr11	115044849	115044850	rs1048932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q23.3		rs1048932-A	NR	5E-18		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs1048932-?	NR	9E-17				Affymetrix [~ 8270000] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	CADM1	rs1048932-C	0.58459	3E-76		0.0346978	[0.031-0.038] unit decrease	NR [13737936] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.3		rs1048932-?	NR	5E-81				NR [~ 8900000] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.3		rs1048932-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q23.3	NA	rs1048932-A	0.4376	4E-27		0.0177	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs1048932-?	NR	2E-75		0.0377003	[0.034-0.042] unit decrease	Affymetrix [20259828] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	11q23.3	CADM1	rs1048932-A	0.42	1E-15		0.019	[0.015-0.023] unit decrease	Illumina [6108953] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	CADM1	rs1048932-C	0.586463	4E-14	(women)	0.033556	[0.024-0.043] unit decrease	NR [17166351] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	CADM1	rs1048932-C	0.585871	2E-33		0.0399863	[0.033-0.047] unit decrease	NR [17166351] (imputed)	N
1462	chr11	115044849	115044850	rs1048932	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	CADM1	rs1048932-C	0.585193	3E-19	(men)	0.0446141	[0.034-0.055] unit decrease	NR [17166351] (imputed)	N
1462	chr11	115045236	115045237	rs4445669	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	11q23.3	CADM1	rs4445669-C	0.535886962949035	5E-17		0.0383	[0.029-0.047] SD increase	Illumina [22400000] (imputed)	N
1462	chr11	115045236	115045237	rs4445669	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	11q23.3	CADM1	rs4445669-T	0.46	4E-12		0.039	[0.027-0.051] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1462	chr11	115052634	115052635	rs11215400	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11q23.3	CADM1	rs11215400-C	0.27	7E-11		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1462	chr11	115058584	115058585	rs11215403	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q23.3	CADM1	rs11215403-G	0.757269	6E-16		0.0132366	[0.01-0.016] unit increase	Affymetrix [12370749]	N
1462	chr11	115078491	115078492	rs3802858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q23.3		rs3802858-C	NR	3E-12		0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1462	chr11	115080364	115080365	rs141892754	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	11q23.3		rs141892754-?	NR	5E-13		0.110999	[0.079-0.143] unit decrease	NR [9800000] (imputed)	N
1462	chr11	115080364	115080365	rs141892754	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	CADM1	rs141892754-G	0.998224	9E-11		0.130605	[0.091-0.17] unit increase	NR [13737936] (imputed)	N
1462	chr11	115080364	115080365	rs141892754	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs141892754-?	NR	1E-10		0.140788	[0.096-0.185] unit increase	Affymetrix [20259828] (imputed)	N
1463	chr11	115081562	115081563	rs9645660	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	11q23.3	CADM1	rs9645660-T	0.5207	7E-11		0.9778278	[NR]	Illumina [12493444] (imputed)	N
1463	chr11	115091118	115091119	rs4936323	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	11q23.3	NR	rs4936323-?		4E-6				Affymetrix, Illumina [1348798]	N
1463	chr11	115093437	115093438	rs11215427	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	11q23.3	CADM1	rs11215427-G	0.74	1E-7		0.046	[0.028-0.064] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1463	chr11	115096955	115096956	rs6589488	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	11q23.3	CADM1	rs6589488-A	0.13	6E-11		1.14	[1.1-1.18]	Affymetrix, Illumina [at least 8111819] (imputed)	N
1463	chr11	115103192	115103193	rs10458969	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	11q23.3		rs10458969-?	NR	1E-8		0.0188	NR unit increase	NR [4425810] (imputed)	N
1463	chr11	115131899	115131900	rs6589490	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	11q23.3	CADM1	rs6589490-G	0.35	6E-6		0.733	[0.42-1.04] unit increase	Illumina [621723]	N
1463	chr11	115134634	115134635	rs72994087	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	11q23.3		rs72994087-?	NR	8E-10		0.0152	NR unit decrease	NR [5460735] (imputed)	N
1463	chr11	115140552	115140553	rs7950069	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	11q23.3	NR	rs7950069-?	NR	5E-6	(Meta-All, NSCL/P)			NR [497084]	N
1463	chr11	115149727	115149728	rs7130530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q23.3		rs7130530-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1463	chr11	115202601	115202602	rs11215498	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs11215498-?	NR	1E-19		0.0335047	[0.026-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
1464	chr11	115227898	115227898	rs528704957	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11q23.3	CADM1	rs528704957-G	0.9946	7E-6		0.2672	[0.15-0.38] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1464	chr11	115227898	115227898	rs528704957	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	11q23.3	CADM1	rs528704957-G	0.9946	7E-6		0.2672	[0.15-0.38] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1464	chr11	115227898	115227898	rs528704957	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q23.3	CADM1	rs528704957-G	0.9945	5E-8		0.3034	[0.19-0.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1464	chr11	115301870	115301871	rs220836	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	CADM1	rs220836-G	0.16	6E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1464	chr11	115319095	115319096	rs220839	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	11q23.3	CADM1	rs220839-?	NR	5E-6	(AA and Sub-Saharan African)			NR [at least 880000]	N
1464	chr11	115339271	115339272	rs61251053	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q23.3	CADM1	rs61251053-A	0.0311	7E-6		0.0868	[0.049-0.125] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1465	chr11	115368516	115368517	rs314478	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.3	Intergenic	rs314478-C	0.6655	6E-9	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1465	chr11	115393225	115393226	rs376997679	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Triglycerides	6,017 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	11q23.3		rs376997679-A	0.0592	7E-6		0.16	[0.082-0.238] unit increase	Illumina [7880617]	N
1465	chr11	115398745	115398746	rs7483296	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	11q23.3	intergenic	rs7483296-T		5E-7		0.3152	unit increase	Illumina [5767231] (imputed)	N
1465	chr11	115398745	115398746	rs7483296	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	11q23.3	intergenic	rs7483296-T		8E-7		0.2927	unit increase	Illumina [5767231] (imputed)	N
1465	chr11	115408678	115408679	rs898614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q23.3		rs898614-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1465	chr11	115444416	115444417	rs3133435	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q23.3	NR	rs3133435-?	NR	4E-12				Affymetrix [NR]	N
1465	chr11	115446095	115446096	rs2515324	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	11q23.3		rs2515324-G	0.500732	7E-6		0.0129592	[0.0078-0.0181] unit decrease	Illumina [7666802] (imputed)	N
1465	chr11	115448114	115448115	rs922205	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	11q23.3		rs922205-T	0.527303	5E-7		0.0134808	[0.0082-0.0187] unit decrease	Illumina [13900000] (imputed)	N
1465	chr11	115463745	115463746	rs11215609	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q23.3	NR	rs11215609-T	NR	9E-6		1.26	[NR]	Illumina [7158791] (imputed)	N
1465	chr11	115473373	115473374	rs2126069	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.3		rs2126069-T	0.4773	1E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1465	chr11	115474113	115474114	rs7937689	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	CADM1	rs7937689-C	0.783437	4E-17		0.0192943	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
1466	chr11	115474580	115474581	rs2613458	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q23.3	CADM1	rs2613458-C	0.719	1E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
1466	chr11	115475926	115475927	rs12271964	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs12271964-?	NR	2E-29		0.0274409	[0.022-0.032] unit increase	Affymetrix [20259828] (imputed)	N
1466	chr11	115482159	115482160	rs2446878	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q23.3	NR	rs2446878-?		7E-6				Illumina [4322238] (imputed)	N
1466	chr11	115487771	115487772	rs2846894	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	CADM1	rs2846894-A	0.144917	2E-20		0.0247335	[0.019-0.03] unit increase	NR [13737936] (imputed)	N
1466	chr11	115487771	115487772	rs2846894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs2846894-?	NR	2E-26		0.0307674	[0.025-0.037] unit increase	Affymetrix [20259828] (imputed)	N
1466	chr11	115491436	115491436	rs113932007	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	11q23.3	CADM1, LINC00900	rs113932007-?	NR	9E-6				Affymetrix [5045527] (imputed)	N
1466	chr11	115491436	115491436	rs113932007	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	11q23.3	CADM1, LINC00900	rs113932007-?	NR	6E-7	(Celtic)			Affymetrix [5045527] (imputed)	N
1466	chr11	115493946	115493947	rs2509353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.3		rs2509353-?	NR	4E-32				NR [~ 8900000] (imputed)	N
1466	chr11	115493946	115493947	rs2509353	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs2509353-?	NR	2E-30		0.023319	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1466	chr11	115493946	115493947	rs2509353	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	LOC101928985	rs2509353-C	0.553962	2E-12		0.0225727	[0.016-0.029] unit increase	NR [17166351] (imputed)	N
1466	chr11	115493946	115493947	rs2509353	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	LOC101928985	rs2509353-C	0.553891	5E-8	(women)	0.0251185	[0.016-0.034] unit increase	NR [17166351] (imputed)	N
1466	chr11	115495296	115495297	rs186742063	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11q23.3	CADM1, LINC00900	rs186742063-A	0.02	1E-7	(EA)	1.18	[0.75-1.61] unit increase	Illumina [up to 13042663] (imputed)	N
1466	chr11	115495296	115495297	rs186742063	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Diastolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	11q23.3	CADM1, LINC00900	rs186742063-A	0.02	4E-8	(EA)	1.42	[0.91-1.93] unit increase	Illumina [up to 13042663] (imputed)	N
1466	chr11	115538353	115538354	rs10790087	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs10790087-?	NR	3E-24		0.0321618	[0.026-0.038] unit increase	Affymetrix [20259828] (imputed)	N
1466	chr11	115546458	115546459	rs1784987	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs1784987-?	NR	2E-24		0.0324684	[0.026-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1466	chr11	115560895	115560896	rs187301407	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKN1	5,357 Icelandic ancestry individuals	NA	11q23.3		rs187301407-T	0.01167	2E-18		0.763103	[0.59-0.93] unit increase	Illumina [7506463] (imputed)	N
1466	chr11	115560895	115560896	rs187301407	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL11	5,362 Icelandic ancestry individuals	NA	11q23.3		rs187301407-T	0.01167	3E-15		0.690692	[0.52-0.86] unit increase	Illumina [7506463] (imputed)	N
1466	chr11	115560895	115560896	rs187301407	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA1	5,359 Icelandic ancestry individuals	NA	11q23.3		rs187301407-T	0.01167	2E-69		1.50634	[1.34-1.67] unit decrease	Illumina [7506463] (imputed)	N
1466	chr11	115581386	115581387	rs1784938	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.3	NR	rs1784938-T	0.207	2E-7		0.00705586	[0.0044-0.0097] unit decrease	NR [9732723] (imputed)	N
1467	chr11	115639120	115639121	rs12274089	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs12274089-?	NR	7E-6	(sucrose)	1.3025928	[0.74-1.87] unit increase	Affymetrix [at least 2500000] (imputed)	N
1467	chr11	115685474	115685475	rs11215690	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	11q23.3		rs11215690-?	NR	5E-8				NR [7857346] (imputed)	N
1467	chr11	115711932	115711933	rs66785688	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	11q23.3	intergenic	rs66785688-G	0.0261	5E-6		3.9	[2.08-7.31]	Illumina [1556551]	N
1468	chr11	115764044	115764045	rs638882	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	11q23.3	intergenic	rs638882-?	NR	4E-6	(NeckZ1rf)			Affymetrix [70897]	N
1468	chr11	115793205	115793206	rs431911	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	11q23.3	LINC00900, BUD13	rs431911-G	0.59	9E-6		1.28		Illumina [8974355] (imputed)	N
1468	chr11	115856312	115856313	rs112277963	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	11q23.3	CADM1-BUD13	rs112277963-C	0.011	5E-6		1.7	[1.47-1.93]	Affymetrix, Illumina [8000000] (imputed)	N
1469	chr11	115890278	115890279	rs74899442	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	11q23.3	CADM1, BUD13	rs74899442-C	0.004	2E-7		0.75	[0.5-1] unit increase	NR [13607369] (imputed)	N
1469	chr11	115890278	115890279	rs74899442	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	11q23.3	CADM1, BUD13	rs74899442-C	0.01	9E-9		2.13		Affymetrix, Illumina [at least 560000] (imputed)	N
1469	chr11	115943252	115943253	rs1426391	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	11q23.3	intergenic	rs1426391-?	.7	7E-6		1.25	[1.15-1.35]	Illumina [1361436] (imputed)	N
1469	chr11	115953173	115953174	rs77544685	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		11q23.3	Intergenic	rs77544685-T	0.013	5E-6	(liability model)	0.33	[0.19-0.47] unit decrease	NR [19725427] (imputed)	N
1469	chr11	115991479	115991480	rs1791890	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	11q23.3		rs1791890-?	NR	3E-7	(mucinous_all)	1.61		Illumina [11595112] (imputed)	N
1470	chr11	115998755	115998756	rs78334599	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	11q23.3	LINC00900, BUD13	rs78334599-G	0.963680993	8E-7		1.1687047	[1.1-1.24]	Illumina [10439017] (imputed)	N
1470	chr11	116028749	116028750	rs73007767	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Early-onset myasthenia gravis	595 European ancestry cases, 2,718 European ancestry controls	NA	11q23.3		rs73007767-G	0.087	4E-8		1.85	[1.48-2.3]	Illumina [24006246] (imputed)	N
1470	chr11	116073666	116073667	rs1894071	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	11q23.3	LOC283143	rs1894071-G	0.857	4E-8		0.0199	[0.013-0.027] unit increase	Illumina [~ 250000] (imputed)	N
1470	chr11	116075000	116075001	rs4938230	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q23.3	NR	rs4938230-A	0.842	2E-11		0.0121162	[0.0086-0.0157] unit increase	NR [~ 9732723] (imputed)	N
1470	chr11	116075000	116075001	rs4938230	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11q23.3	NR	rs4938230-A	0.842	1E-10		0.012810377	[0.0089-0.0167] unit increase	NR [~ 10000000] (imputed)	N
1470	chr11	116079296	116079297	rs7106477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q23.3		rs7106477-G	NR	3E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1470	chr11	116090851	116090852	rs7104334	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11q23.3	NR	rs7104334-T	0.754	5E-12		0.013777	[0.0099-0.0177] unit increase	Affymetrix [NR] (imputed)	N
1470	chr11	116096248	116096249	rs10790112	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11q23.3	NR	rs10790112-C	0.8443	6E-12		0.0194534	[0.014-0.025] unit increase	Affymetrix [10613246] (imputed)	N
1470	chr11	116097135	116097136	rs17119370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.3		rs17119370-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1470	chr11	116097135	116097136	rs17119370	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q23.3	BUD13	rs17119370-A	0.6887	5E-8		0.1021	[0.065-0.139] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1470	chr11	116102387	116102388	rs7940127	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11q23.3	BUD13	rs7940127-T	0.1369	2E-8		0.01816633	[0.012-0.025] unit decrease	Affymetrix [11514936] (imputed)	N
1470	chr11	116126803	116126804	rs10891937	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	11q23.3	NR	rs10891937-A	0.588	4E-6		0.016120961	[0.0093-0.0229] unit increase	Affymetrix [up to 6544775] (imputed)	N
1471	chr11	116139399	116139400	rs4938247	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q23.3	BUD13	rs4938247-C	0.717	1E-10		0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1471	chr11	116139399	116139400	rs4938247	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	11q23.3	BUD13	rs4938247-C	0.7145	5E-9		0.012578829	[0.0084-0.0168] unit decrease	Illumina [9339358] (imputed)	N
1471	chr11	116140930	116140931	rs74332127	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs74332127-A	NR	1E-9		0.0605	[0.041-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1471	chr11	116148613	116148614	rs117975710	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	11q23.3		rs117975710-C	0.03997	7E-6		1.868	[1.421-2.456]	Affymetrix [7975321] (imputed)	N
1472	chr11	116298366	116298367	rs490592	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	11q23.3	intergenic	rs490592-?	0.21	1E-6				Illumina [448293]	N
1472	chr11	116302650	116302651	rs35266076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs35266076-A	NR	2E-18		0.0621	[0.048-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1472	chr11	116309712	116309713	rs73580459	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	11q23.3	LINC00900, BUD13	rs73580459-?		8E-6	(EA)	0.256	[0.14-0.37] unit increase	Illumina [7205781] (imputed)	N
1472	chr11	116309712	116309713	rs73580459	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	11q23.3	LINC00900, BUD13	rs73580459-?	NR	5E-6	(EA)	0.0965	[0.055-0.138] unit increase	Illumina [7176022] (imputed)	N
1472	chr11	116310114	116310115	rs11215932	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q23.3	NR	rs11215932-T	0.538	2E-9		0.0068141	[0.0046-0.009] unit increase	NR [9732723] (imputed)	N
1472	chr11	116352621	116352622	rs495033	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs495033-T	NR	5E-21		0.0429	[0.034-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1472	chr11	116352950	116352951	rs144329504	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	11q23.3	NR	rs144329504-?		7E-6		0.055	[0.03-0.08] unit increase	Illumina [7533529] (imputed)	N
1472	chr11	116355651	116355652	rs118034464	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	11q23.3	NR	rs118034464-C	0.008253	1E-6		0.7961	[0.47-1.12] unit increase	Illumina [10677593] (imputed)	N
1472	chr11	116362653	116362654	rs61906588	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q23.3	Intergenic	rs61906588-T	0.323	4E-6		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1472	chr11	116371073	116371074	rs10466531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs10466531-T	NR	6E-12		0.0165	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1472	chr11	116375252	116375253	rs7107783	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11q23.3		rs7107783-A	0.539	8E-6		0.062	[0.035-0.089] unit decrease	Affymetrix [6030650] (imputed)	N
1472	chr11	116383063	116383064	rs11599994	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs11599994-A	NR	1E-9		0.0365	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116400381	116400382	rs7941534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs7941534-G	NR	8E-15		0.0226	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116400381	116400382	rs7941534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs7941534-G	NR	2E-11		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116400381	116400382	rs7941534	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	11q23.3	NR	rs7941534-?	NR	8E-6		1.2722	[NR]	Affymetrix [722112]	N
1473	chr11	116411433	116411434	rs73009178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs73009178-A	NR	1E-15		0.0293	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116412612	116412613	rs10502219	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	11q23.3	MGC13125	rs10502219-?	NR	6E-6	(Males)		[NR]	Illumina [283437]	N
1473	chr11	116431148	116431149	rs11600156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs11600156-G	NR	2E-12		0.0222	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116431520	116431521	rs4936356	31978080	Andersen MK	2020-01-24	PLoS Genet	The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders.	Body mass index	4,626 Greenlandic individuals	1,529 Greenlandic individuals, 1,058 Yup'ik Alaska Native ancestry individuals	11q23.3	BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, SIK3, CADM1	rs4936356-G	0.24	5E-8				Illumina [115182] (imputed)	N
1473	chr11	116433495	116433496	rs117794084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs117794084-T	NR	8E-45		0.1343	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116433495	116433496	rs117794084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs117794084-T	NR	7E-17		0.0832	[0.064-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116433495	116433496	rs117794084	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs117794084-T	NR	3E-10		0.0629	[0.043-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116438850	116438851	rs17492380	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	11q23.3	intergenic	rs17492380-?	NR	9E-6	(AUC)			NR [2092490]	N
1473	chr11	116445685	116445686	rs368141164	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	11q23.3	NR	rs368141164-?	0.06	2E-7		1.87	[1.48-2.36]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1473	chr11	116464991	116464992	rs11216028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs11216028-T	NR	6E-15		0.0299	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116473281	116473282	rs114594921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs114594921-C	NR	4E-28		0.0911	[0.075-0.107] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116473281	116473282	rs114594921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs114594921-C	NR	3E-13		0.0631	[0.046-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116476667	116476668	rs61904855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs61904855-A	NR	2E-15		0.0575	[0.043-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116481693	116481694	rs73578509	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	BUD13	rs73578509-C	0.982381	6E-13		0.0549259	[0.04-0.07] unit increase	Affymetrix [NR] (imputed)	N
1473	chr11	116487299	116487300	rs73011197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs73011197-T	NR	3E-10		0.0416	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116489643	116489644	rs73012959	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	11q23.3	intergenic	rs73012959-C	0.91	6E-7		1.186	[0.72-1.65] unit decrease	Illumina [at least 4683137] (imputed)	N
1473	chr11	116493154	116493155	rs112319461	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	11q23.3	NR	rs112319461-?	NR	1E-6		1.2170854	[1.12-1.32]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1473	chr11	116493737	116493738	rs1240660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs1240660-A	NR	7E-24		0.0241	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116507581	116507582	rs74948313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs74948313-G	NR	5E-34		0.0436	[0.037-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1473	chr11	116507581	116507582	rs74948313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs74948313-G	NR	2E-17		0.0318	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116507581	116507582	rs74948313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs74948313-G	NR	1E-9		0.0228	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116511521	116511522	rs519000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs519000-T	NR	9E-40		0.0421	[0.036-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1473	chr11	116520526	116520527	rs1240773	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	11q23.3	BUD13	rs1240773-?	0.12	8E-6				Illumina [~ 800000]	N
1474	chr11	116523567	116523568	rs559220724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs559220724-A	0.991376	1E-11		0.148189	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116523567	116523568	rs559220724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs559220724-A	0.991375	8E-23		0.219707	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1474	chr11	116524964	116524965	rs117133249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs117133249-A	NR	2E-48		0.0955	[0.083-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116524964	116524965	rs117133249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs117133249-A	NR	4E-27		0.0736	[0.06-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr11	116524964	116524965	rs117133249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs117133249-A	NR	2E-16		0.0562	[0.043-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr11	116525729	116525730	rs480823	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	BUD13	rs480823-T	0.921004	3E-381		0.155635	[0.15-0.16] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr11	116526321	116526322	rs486394	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs486394-?	NR	6E-23		0.02303	[0.018-0.028] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116526321	116526322	rs486394	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs486394-?	NR	7E-24		0.02188	[0.017-0.026] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116526321	116526322	rs486394	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	11q23.3	LOC101929011	rs486394-?	NR	8E-8				Affymetrix [344366]	N
1474	chr11	116528543	116528544	rs74444640	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	11q23.3		rs74444640-T	NR	9E-28		15.535178	mg/dl increase	NR [5712318]	N
1474	chr11	116528662	116528663	rs73012993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs73012993-G	NR	3E-30		0.0464	[0.038-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr11	116528662	116528663	rs73012993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs73012993-G	NR	9E-11		0.0275	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116529441	116529442	rs11820504	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs11820504-?	NR	7E-14		0.01897	[0.014-0.024] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116530853	116530854	rs144788484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs144788484-G	0.991883	8E-16		0.184393	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116530853	116530854	rs144788484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs144788484-G	0.991785	4E-10		0.148457	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116530853	116530854	rs144788484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q23.3		rs144788484-G	0.991883	5E-8		0.12601	[0.081-0.171] unit increase	NR [11722792] (imputed)	N
1474	chr11	116530853	116530854	rs144788484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs144788484-G	0.991883	3E-15		0.188745	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
1474	chr11	116531478	116531479	rs17119878	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs17119878-?	NR	2E-6	(CE 20:3)	0.4114142	[0.24-0.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116531478	116531479	rs17119878	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs17119878-?	NR	1E-6	(DAG 36:2)	0.43011972	[0.26-0.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116531738	116531739	rs2155216	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	11q23.3	ZPR1, APOA5, BUD13	rs2155216-A	0.0308	9E-14		11.459903	[8.44-14.48] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	6E-142				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	4E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	3E-132	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	3E-148				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	2E-136	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-7	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	8E-6	(Hispanic)	0.11	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	4E-9	(Asian)	0.138	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	4E-74	(EA)	0.133	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	2E-81		0.131	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	2E-8	(Asian)	0.136	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	2E-51		0.134	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-42	(EA)	0.135	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	3E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-11				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	1E-12				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	4E-30				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	4E-29	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	6E-162				Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q23.3	LINC00900, BUD13	rs509728-C	NR	3E-225	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	9E-17		0.025	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	2E-16	(EA)	0.026	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	7E-11		0.03031	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116533166	116533167	rs509728	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q23.3	LINC00900, BUD13	rs509728-C	NR	7E-10	(EA)	0.03213	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116538688	116538689	rs1784128	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		LOC101929011	rs1784128-A	0.39	9E-6		0.09	[0.051-0.129] unit decrease	Illumina [3700000] (imputed)	N
1474	chr11	116552561	116552562	rs7952043	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs7952043-?	NR	4E-10	(CE 18:3)	0.54377043	[0.37-0.71] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116552561	116552562	rs7952043	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs7952043-?	NR	1E-6	(CE 18:1)	0.42491093	[0.25-0.6] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116560882	116560883	rs3017232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs3017232-T	NR	2E-13		0.0189	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr11	116563991	116563992	rs1787701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	11q23.3	AP000770.1	rs1787701-C	NR	1E-8		0.017852	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1474	chr11	116563991	116563992	rs1787701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	11q23.3	AP000770.1	rs1787701-C	NR	1E-8		0.0179866	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1474	chr11	116569339	116569340	rs187024286	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	11q23.3		rs187024286-A	0.019916	2E-8		0.0728024	[0.047-0.098] unit increase	Illumina [7980478] (imputed)	N
1474	chr11	116569339	116569340	rs187024286	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	11q23.3		rs187024286-A	0.019916	3E-8		0.0881685	[0.057-0.119] unit increase	Illumina [7980478] (imputed)	N
1474	chr11	116572088	116572089	rs1892948	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs1892948-?	NR	5E-7	(CE 20:5)	0.44415203	[0.27-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116572088	116572089	rs1892948	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs1892948-?	NR	5E-7	(CE 20:4)	0.43985784	[0.27-0.61] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116574335	116574336	rs1145198	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs1145198-?	NR	2E-8		0.03003476	[0.02-0.041] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116574335	116574336	rs1145198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs1145198-G	NR	1E-38		0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116574335	116574336	rs1145198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs1145198-G	0.751	4E-34	(EA)	0.058	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116574335	116574336	rs1145198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs1145198-G	NR	2E-14		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116574335	116574336	rs1145198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs1145198-G	0.751	1E-14	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116576414	116576415	rs1263056	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q23.3	NR	rs1263056-A	NR	1E-9		0.768	unit increase	Affymetrix [14661600] (imputed)	N
1474	chr11	116576414	116576415	rs1263056	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	11q23.3		rs1263056-G	0.4817	4E-8		0.01355	[0.0087-0.0184] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1474	chr11	116577693	116577694	rs75507001	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs75507001-C	0.956875	5E-9	(PCSK7, 4459_68_2)	0.3562755	[0.24-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
1474	chr11	116577693	116577694	rs75507001	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs75507001-C	0.956875	4E-9	(ARL11, 12433_8_3)	0.3574497	[0.24-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
1474	chr11	116577693	116577694	rs75507001	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs75507001-C	0.956875	2E-19	(APOA1, 2750_3_2)	0.5502388	[0.43-0.67] unit increase	Illumina [> 1000000] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs2367970-?	NR	4E-18		0.04079843	[0.032-0.05] unit increase	Illumina [31978265] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	NR	5E-70		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	0.789	3E-43	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	0.77	1E-13	(Hispanic)	0.121	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	0.677	9E-33	(East Asian)	0.187	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	NR	1E-10		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	0.789	1E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	NR	9E-12		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2367970-G	0.677	2E-9	(East Asian)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116581640	116581641	rs2367970	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	11q23.3	ZNF259, APOA5	rs2367970-G	0.776	8E-10	(Hispanic)	0.097	[0.066-0.128] unit increase	Affymetrix [at least 370268] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-10		0.107599	[0.075-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	6E-11		0.110326	[0.077-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-10		0.107537	[0.075-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	4E-10		0.107122	[0.074-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-10		0.103871	[0.072-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	5E-11		0.0815936	[0.057-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-11		0.0904982	[0.064-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-10		0.084724	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	4E-10		0.0818751	[0.056-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-10		0.0786637	[0.054-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-17		0.115927	[0.089-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-17		0.112379	[0.087-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-11		0.0893781	[0.064-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-11		0.0926991	[0.066-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	5E-14		0.101557	[0.075-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-15		0.10822	[0.081-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-13		0.102072	[0.075-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-16		0.106615	[0.081-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-15		0.108023	[0.082-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-16		0.10826	[0.082-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-13		0.0991484	[0.073-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-17		0.111525	[0.086-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	5E-13		0.0863606	[0.063-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-12		0.090344	[0.065-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-11		0.0825724	[0.059-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	3E-12		0.0830404	[0.06-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	5E-14		0.0912337	[0.067-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:0_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	2E-10		0.0831059	[0.057-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	1E-11		0.0871134	[0.062-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	4E-11		0.0853047	[0.06-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs4938303-C	NR	5E-16		0.0814496	[0.062-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs4938303-?	NR	1E-24		0.0415723	[0.034-0.05] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116584986	116584987	rs4938303	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13	rs4938303-T	0.75	4E-21		0.07	[0.06-0.08] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs7350481-?	NR	9E-75		0.1267718	[0.11-0.14] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs7350481-?	NR	5E-10		3.505605	[2.4-4.61] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs7350481-?	NR	2E-13		1.351242	[0.99-1.71] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	31087446	Han S	2019-05-13	Genet Epidemiol	Exome chip-driven association study of lipidemia in >14,000 Koreans and evaluation of genetic effect on identified variants between different ethnic groups.	Hypertriglyceridemia	13,890 Korean ancestry individuals	NA	11q23.3	LOC101929011, BUD13	rs7350481-?		2E-24	(KARE)	10.194	unit decrease	Illumina [240075]	N
1474	chr11	116586282	116586283	rs7350481	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	11q23.3	BUD13	rs7350481-A	0.19	1E-20	(Indian)	16.32	[12.89-19.75] unit increase	Illumina [551825]	N
1474	chr11	116586282	116586283	rs7350481	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	intergenic	rs7350481-T	0.0708	1E-300		0.2272	[0.22-0.24] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Triglyceride levels	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	11q23.3	APOA1, APOA4, APOA5, APOC3	rs7350481-T	NR	5E-9		0.041	[0.027-0.055] unit increase	Illumina [4642479] (imputed)	N
1474	chr11	116586282	116586283	rs7350481	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs7350481-G	0.43	1E-49		0.241	[0.21-0.27] unit increase	Illumina [561583]	N
1474	chr11	116586282	116586283	rs7350481	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs7350481-T	0.28	9E-10	(HDL)	0.124	[0.085-0.163] unit decrease	Illumina [561583]	N
1474	chr11	116590786	116590787	rs6589563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs6589563-G	0.922607	7E-11		0.048656	[0.034-0.063] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116590786	116590787	rs6589563	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.3		rs6589563-G	0.922	1E-9				Affymetrix [10369434] (imputed)	N
1474	chr11	116590786	116590787	rs6589563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q23.3	intergenic	rs6589563-A	0.0786	8E-10		0.0410643	[0.028-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116596308	116596309	rs61905078	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	BUD13	rs61905078-A	0.92616	4E-602		0.199765	[0.19-0.21] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr11	116598064	116598065	rs78484485	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	BUD13	rs78484485-G	0.945984	6E-67		0.0761554	[0.068-0.085] unit increase	Affymetrix [NR] (imputed)	N
1474	chr11	116598987	116598988	rs180360	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs180360-?	NR	5E-35		0.02617	[0.022-0.031] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116598987	116598988	rs180360	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs180360-?	NR	2E-30		0.02437	[0.02-0.029] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116598987	116598988	rs180360	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11q23.3	ZPR1	rs180360-?	NR	2E-24		0.01055	[0.0085-0.0126] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116598987	116598988	rs180360	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11q23.3	ZPR1	rs180360-?	NR	2E-25		0.01031	[0.0082-0.0124] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116599391	116599392	rs180358	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	11q23.3	MGC13125	rs180358-?	0.23	6E-6			[NR]	Illumina [551642]	N
1474	chr11	116603676	116603677	rs1893460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1893460-A	NR	1E-13		0.0686	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116603676	116603677	rs1893460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1893460-A	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116603676	116603677	rs1893460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1893460-A	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116603676	116603677	rs1893460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1893460-T	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116603676	116603677	rs1893460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1893460-A	NR	1E-13		0.1292	[0.095-0.163] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	3E-10		0.147288	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	4E-10		0.148685	[0.1-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	2E-10		0.147203	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	2E-10		0.146653	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	3E-10		0.127917	[0.088-0.168] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12272004-A	NR	2E-12		0.123196	[0.089-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs12272004-?	NR	3E-27		0.06607043	[0.054-0.078] unit increase	Illumina [31978265] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs12272004-?	NR	8E-6		2.419822	[1.36-3.48] unit increase	Illumina [32003504] (imputed)	N
1474	chr11	116603723	116603724	rs12272004	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	11q23.3	BUD13	rs12272004-?	NR	8E-7	(Indian)			Illumina [551825]	N
1474	chr11	116603723	116603724	rs12272004	19185284	Ferrucci L	2009-01-29	Am J Hum Genet	Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.	Carotenoid and tocopherol levels	1,191 European ancestry individuals	2,540 European ancestry individuals, 211 individuals	11q23.3	APOA5	rs12272004-A	0.07	8E-10	(alpha-tocopherol)	0.07	[0.049-0.095] umol/L increase	Illumina [~ 500451]	N
1474	chr11	116603723	116603724	rs12272004	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs12272004-C	0.93	5E-13		0.18	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1474	chr11	116603723	116603724	rs12272004	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs12272004-C	0.93	5E-13		0.18	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1474	chr11	116603723	116603724	rs12272004	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs12272004-C	0.93	7E-7		0.11	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1474	chr11	116603815	116603816	rs150423652	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	BUD13	rs150423652-G	0.993326	2E-119		0.286267	[0.26-0.31] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr11	116604513	116604514	rs4938307	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938307-T	NR	2E-11		0.0581	[0.041-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116604513	116604514	rs4938307	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938307-T	NR	2E-11		0.05	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116604513	116604514	rs4938307	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938307-C	NR	2E-11		0.0915	[0.065-0.118] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116604513	116604514	rs4938307	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938307-G	NR	2E-11		0.045	[0.032-0.058] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116604513	116604514	rs4938307	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938307-C	NR	2E-11		0.0381	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0935	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	3E-23		0.0962	[0.077-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.059	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.0936	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.0621	[0.05-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	5E-23		0.1189	[0.095-0.142] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.0831	[0.067-0.1] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	3E-23		0.0868	[0.07-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.0789	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	3E-23		0.0871	[0.07-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0958	[0.077-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.0841	[0.067-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0606	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0958	[0.077-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0781	[0.063-0.094] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	5E-23		0.0765	[0.061-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	5E-23		0.0613	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.0608	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.0976	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.0641	[0.052-0.077] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0587	[0.047-0.07] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.0796	[0.064-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0789	[0.063-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	5E-23		0.1554	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.059	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.0829	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	2E-23		0.1582	[0.13-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	5E-23		0.1153	[0.092-0.138] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	3E-23		0.0601	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.055	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	2E-23		0.0861	[0.069-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	5E-23		0.1203	[0.096-0.144] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	2E-23		0.1214	[0.097-0.145] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.0934	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.1158	[0.093-0.139] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.0638	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.0849	[0.068-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0607	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.091	[0.073-0.109] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.0789	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.1085	[0.087-0.13] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.0785	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	4E-23		0.0793	[0.064-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.0989	[0.079-0.118] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.1477	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.0769	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.0606	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0869	[0.07-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.0932	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0564	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	5E-23		0.0864	[0.069-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	4E-23		0.1184	[0.095-0.142] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0646	[0.052-0.077] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0637	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	3E-23		0.0591	[0.048-0.071] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0951	[0.076-0.114] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.0938	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-T	NR	3E-23		0.1197	[0.096-0.143] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-A	NR	4E-23		0.0573	[0.046-0.069] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	4E-23		0.0936	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-C	NR	3E-23		0.1161	[0.093-0.139] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607367	116607368	rs1558860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558860-G	NR	3E-23		0.0642	[0.051-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	9E-12		0.198611	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	7E-12		0.200071	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-10		0.185633	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	7E-11		0.188498	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	9E-23		0.0567	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.0634	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	6E-23		0.1298	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	9E-23		0.0979	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.1003	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	8E-23		0.0787	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.0632	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	7E-23		0.0543	[0.044-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	6E-23		0.0869	[0.07-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	1E-22		0.0921	[0.074-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	8E-23		0.1	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-22		0.0957	[0.076-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	1E-22		0.0568	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	9E-23		0.0601	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-22		0.054	[0.043-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	1E-22		0.0922	[0.074-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-11		0.190113	[0.13-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	3E-15		0.183777	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-11		0.158898	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-15		0.191656	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	4E-15		0.181832	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	8E-23		0.0637	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	7E-23		0.0913	[0.073-0.11] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	7E-23		0.0608	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	1E-22		0.0696	[0.056-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.0548	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	8E-23		0.141	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	1E-22		0.1003	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-22		0.0919	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	5E-23		0.0545	[0.044-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-22		0.0627	[0.05-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.1004	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	1E-22		0.0982	[0.079-0.118] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	5E-23		0.1077	[0.086-0.129] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	5E-23		0.0585	[0.047-0.07] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	8E-23		0.0855	[0.068-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	9E-12		0.157274	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	4E-10		0.148115	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-12		0.170907	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	8E-13		0.162631	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	9E-14		0.176294	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-14		0.176522	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	7E-23		0.0871	[0.07-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-22		0.1132	[0.09-0.136] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	1E-22		0.0768	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-12		0.16732	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	1E-22		0.0792	[0.063-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	7E-23		0.0631	[0.051-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	6E-15		0.179483	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	1E-12		0.150284	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-13		0.15313	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	3E-13		0.152308	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-12		0.150039	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	3E-10		0.141998	[0.098-0.186] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	9E-23		0.0767	[0.061-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	1E-22		0.0836	[0.067-0.1] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	8E-23		0.1296	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.1298	[0.1-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	7E-23		0.0608	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.0522	[0.042-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	1E-22		0.0598	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	9E-23		0.0767	[0.061-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	7E-23		0.0566	[0.045-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	9E-23		0.0578	[0.046-0.069] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	1E-22		0.0547	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	1E-22		0.0568	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	9E-23		0.1178	[0.094-0.141] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	6E-23		0.0932	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	9E-23		0.0999	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	6E-23		0.0604	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-G	NR	6E-23		0.0548	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	1E-22		0.1557	[0.12-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-T	NR	8E-23		0.0928	[0.074-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-A	NR	8E-23		0.0982	[0.079-0.118] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1558861-C	NR	6E-23		0.1014	[0.081-0.122] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs1558861-C	NR	2E-10		0.11155	[0.077-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs1558861-?	NR	9E-74		0.1268124	[0.11-0.14] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs1558861-?	NR	5E-12		3.928493	[2.81-5.04] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs1558861-?	NR	2E-10		1.186123	[0.82-1.55] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	27599772	Ram R	2016-09-07	Clin Genet	A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia.	Hypertriglyceridemia	927 Saudi Arabian ancestry cases, 3,159 Saudi Arabian ancestry controls	317 Saudi Arabian ancestry cases, 1,098 Saudi Arabian ancestry controls	11q23.3	APOA1, APOA5	rs1558861-C	NR	4E-24		1.74	[1.30-2.23]	Affymetrix [~ 8000000] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13	rs1558861-T	0.94	2E-6		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1474	chr11	116607436	116607437	rs1558861	18193046	Kooner JS	2008-01-13	Nat Genet	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry male individuals, 1,006 Indian Asian ancestry male individuals	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry female individuals	11q23.3	MGC13125, LOC440069	rs1558861-C	0.18	2E-26		17.0	[13.28-20.72] % increase	Perlegen [up to 216774]	N
1474	chr11	116607873	116607874	rs59455853	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs59455853-?	NR	6E-22		0.114	[0.09-0.138] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116609539	116609540	rs11216122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs11216122-T	NR	3E-15		0.0432	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116610248	116610249	rs10466588	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs10466588-?	NR	9E-7	(CE 16:1)	0.30403185	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs61905084-T	NR	8E-11		0.0523	[0.037-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs61905084-A	NR	8E-11		0.0888	[0.062-0.116] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs61905084-G	NR	8E-11		0.0791	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs61905084-G	NR	8E-11		0.0682	[0.048-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs61905084-C	NR	8E-11		0.0428	[0.03-0.056] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs61905084-?	NR	7E-32		0.03031	[0.025-0.036] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs61905084-?	NR	4E-38		0.03136	[0.026-0.037] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11q23.3	ZPR1	rs61905084-?	NR	8E-25		0.01194	[0.0095-0.0143] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116610293	116610294	rs61905084	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11q23.3	ZPR1	rs61905084-?	NR	2E-26		0.01264	[0.01-0.015] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs9326246-C	0.0682085	1E-10		0.0473368	[0.033-0.062] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs9326246-C	0.0682085	4E-9		0.0440191	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.049	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0596	[0.041-0.078] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0703	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0316	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0707	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	7E-10		0.0711	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0518	[0.035-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0669	[0.046-0.088] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0454	[0.031-0.06] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0712	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	7E-10		0.0675	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0671	[0.046-0.088] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	7E-10		0.0812	[0.056-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	7E-10		0.0366	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0701	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.07	[0.048-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	7E-10		0.0455	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.049	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0697	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0786	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.0365	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	7E-10		0.032	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0469	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	7E-10		0.0441	[0.03-0.058] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0628	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.0792	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0552	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	7E-10		0.0445	[0.03-0.059] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0621	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0636	[0.043-0.084] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0789	[0.054-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0691	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0555	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0322	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.0783	[0.053-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	7E-10		0.0788	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.1981	[0.14-0.26] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	7E-10		0.0628	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0786	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0683	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	7E-10		0.0365	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0479	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.1043	[0.071-0.137] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0599	[0.041-0.079] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.03	[0.02-0.04] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.059	[0.04-0.078] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0709	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0398	[0.027-0.052] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	7E-10		0.0725	[0.05-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	7E-10		0.0365	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0664	[0.045-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0683	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0727	[0.05-0.096] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0825	[0.056-0.109] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	6E-10		0.0813	[0.056-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-G	NR	6E-10		0.0623	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-A	NR	7E-10		0.0672	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0775	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-C	NR	6E-10		0.0809	[0.055-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9326246-T	NR	6E-10		0.0706	[0.048-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611732	116611733	rs9326246	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	11q23.3	ZNF259, APOA1, APO5A	rs9326246-C	NR	3E-7		1.15	[1.09-1.21]	Illumina [575000] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-A	NR	9E-14		0.1259	[0.093-0.159] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-A	NR	9E-14		0.0652	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-A	NR	9E-14		0.0954	[0.07-0.12] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-T	NR	9E-14		0.0792	[0.058-0.1] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-G	NR	9E-14		0.1253	[0.092-0.158] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-C	NR	9E-14		0.0517	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-T	NR	9E-14		0.0505	[0.037-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-G	NR	9E-14		0.0519	[0.038-0.066] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-C	NR	9E-14		0.1091	[0.08-0.138] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-A	NR	9E-14		0.0537	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-T	NR	9E-14		0.0352	[0.026-0.044] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-C	NR	9E-14		0.0596	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-G	NR	9E-14		0.1302	[0.096-0.165] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-T	NR	9E-14		0.063	[0.046-0.08] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180349-G	NR	9E-14		0.0756	[0.056-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116611826	116611827	rs180349	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs180349-?	NR	3E-15		0.03738907	[0.028-0.047] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	NR	3E-25		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	0.293	6E-8	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	0.281	6E-8	(Hispanic)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	0.249	2E-46	(East Asian)	0.238	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	NR	1E-7		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116611826	116611827	rs180349	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs180349-A	0.249	5E-18	(East Asian)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116612273	116612274	rs11216125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216125-T	NR	2E-30		0.1061	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116612273	116612274	rs11216125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216125-A	NR	2E-30		0.0942	[0.078-0.11] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116612273	116612274	rs11216125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216125-C	NR	2E-30		0.1061	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116612273	116612274	rs11216125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216125-G	NR	2E-30		0.0942	[0.078-0.11] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12280753-T	NR	2E-10		0.143137	[0.099-0.187] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12280753-T	NR	3E-10		0.138966	[0.096-0.182] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12280753-T	NR	1E-10		0.145316	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12280753-T	NR	2E-10		0.139677	[0.097-0.183] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12280753-T	NR	7E-11		0.109742	[0.077-0.143] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116613659	116613660	rs12280753	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors (age interaction)	525 European ancestry individuals	2,442 Finnish ancestry individuals	11q23.3	CADM1, APOA5, BUD13	rs12280753-T	NR	8E-6	(triglycerides)	0.69	[0.40-0.98] unit increase	Illumina [2173391] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216126-T	NR	2E-30		0.0812	[0.067-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216126-C	NR	2E-30		0.1322	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216126-G	NR	2E-30		0.1066	[0.088-0.125] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216126-G	NR	2E-30		0.1061	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216126-C	NR	2E-30		0.1061	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs11216126-C	NR	1E-90		0.0708	[0.064-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs11216126-C	NR	4E-17		0.0295	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs11216126-C	NR	1E-16		0.0291	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs11216126-C	NR	5E-27		0.0395	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs11216126-C	NR	7E-22		0.0338	[0.027-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs11216126-?	NR	4E-22		0.06299106	[0.05-0.076] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	Intergenic	rs11216126-?		9E-11				Affymetrix [at least 805769] (imputed)	N
1474	chr11	116617239	116617240	rs11216126	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q23.3	intergenic	rs11216126-C	0.20	3E-34		0.0322	[0.027-0.037] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	3E-11		0.15512	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	1E-10		0.145741	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	5E-11		0.155373	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	2E-11		0.153491	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	2E-11		0.157949	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	1E-11		0.154272	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	2E-10		0.132841	[0.092-0.174] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	2E-10		0.128658	[0.089-0.168] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	3E-10		0.107005	[0.074-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_17:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	2E-10		0.124954	[0.087-0.163] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	3E-10		0.128833	[0.089-0.169] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs28927680-G	NR	1E-12		0.123575	[0.089-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs28927680-?	NR	1E-23		0.06105633	[0.049-0.073] unit increase	Illumina [31978265] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs28927680-?	NR	1E-6		2.574956	[1.53-3.62] unit increase	Illumina [32003504] (imputed)	N
1474	chr11	116619072	116619073	rs28927680	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	11q23.3	BUD13	rs28927680-G	0.09	3E-7	(Triglycerides)	0.22	unit increase	Affymetrix [390619]	N
1474	chr11	116619072	116619073	rs28927680	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13	rs28927680-G	0.07	2E-17		0.26	[0.20-0.32] unit increase	Affymetrix [389878]	N
1474	chr11	116620128	116620129	rs77684111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs77684111-G	0.993591	2E-8		0.140927	[0.092-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116620128	116620129	rs77684111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs77684111-G	0.993591	1E-8		0.141877	[0.093-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116620128	116620129	rs77684111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs77684111-G	0.993591	2E-8		0.139786	[0.091-0.188] unit increase	NR [11722792] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-A	NR	3E-30		0.0717	[0.059-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-G	NR	3E-30		0.152	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-G	NR	2E-30		0.1361	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-C	NR	2E-30		0.0916	[0.076-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-A	NR	2E-30		0.0737	[0.061-0.086] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116620255	116620256	rs11216129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216129-G	NR	2E-30		0.1362	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116621622	116621623	rs74496689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs74496689-A	NR	5E-21		0.0853	[0.067-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116621622	116621623	rs74496689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs74496689-A	NR	3E-12		0.0633	[0.045-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116621622	116621623	rs74496689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs74496689-A	NR	6E-12		0.0654	[0.047-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	11q23.3		rs66505542-T	0.153	3E-30		0.82		Affymetrix [15679186] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	11q23.3	BUD13	rs66505542-?	NR	1E-8		5.692	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	BUD13	rs66505542-T	0.859321	4E-35		0.040067766	[0.034-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q23.3	BUD13	rs66505542-T	0.858869	2E-14		0.024417236	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q23.3	BUD13	rs66505542-T	0.858864	7E-17		0.026605567	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs66505542-?	NR	3E-106		0.187	[0.17-0.2] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	11q23.3	BUD13	rs66505542-T	0.6969	2E-8	(SM d16:1/20:0)	0.0837	[0.054-0.113] unit increase	Illumina [~ 47000000] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11q23.3	BUD13	rs66505542-T	NR	2E-14		0.042759	[0.032-0.054] unit increase	Affymetrix [16832071] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q23.3	BUD13	rs66505542-T	0.8588	7E-11		0.03347477	[0.023-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116623213	116623214	rs66505542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.3	BUD13	rs66505542-T	0.8592	1E-16		0.04332688	[0.033-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116623221	116623222	rs398017699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q23.3		rs398017699-T	NR	2E-80		0.0465	[0.042-0.051] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1474	chr11	116623221	116623222	rs398017699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q23.3		rs398017699-T	NR	1E-43		0.0385	[0.033-0.044] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1474	chr11	116623221	116623222	rs398017699	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q23.3	BUD13	rs398017699-?		3E-27		0.1043	[0.085-0.123] unit increase	Illumina [31500000] (imputed)	N
1474	chr11	116623221	116623222	rs398017699	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q23.3	BUD13	rs398017699-?		8E-11		0.0626	[0.044-0.081] unit increase	Illumina [31500000] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	8E-14		0.1197	[0.088-0.151] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0594	[0.044-0.075] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	9E-14		0.0883	[0.065-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-C	NR	8E-14		0.1078	[0.08-0.136] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-C	NR	8E-14		0.0629	[0.046-0.079] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	9E-14		0.121	[0.089-0.153] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-C	NR	9E-14		0.045	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	8E-14		0.1065	[0.078-0.135] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0452	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	9E-14		0.045	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0772	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.089	[0.066-0.112] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0411	[0.03-0.052] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0414	[0.031-0.052] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-A	NR	8E-14		0.1065	[0.078-0.135] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-C	NR	9E-14		0.1682	[0.12-0.21] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-C	NR	8E-14		0.0739	[0.054-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-A	NR	8E-14		0.0886	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0519	[0.038-0.066] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.0767	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	9E-14		0.0886	[0.065-0.112] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-A	NR	9E-14		0.0689	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	9E-14		0.0517	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	9E-14		0.0689	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	8E-14		0.1294	[0.095-0.163] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.089	[0.066-0.112] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-A	NR	8E-14		0.0873	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-G	NR	8E-14		0.069	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116623658	116623659	rs180327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180327-T	NR	7E-14		0.068	[0.05-0.086] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624094	116624095	rs189693121	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	BUD13	rs189693121-A	0.999	2E-6	(AA)	0.441	unit increase	Illumina [NR] (imputed)	N
1474	chr11	116624095	116624096	rs181290688	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	BUD13	rs181290688-A	0.999	2E-6	(AA)	0.441	unit increase	Illumina [NR] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXPH2	5,359 Icelandic ancestry individuals	NA	11q23.3		rs6589564-C	0.06772	3E-29		0.408346	[0.34-0.48] unit decrease	Illumina [7506463] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	1E-10		0.0957	[0.066-0.125] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	1E-10		0.0419	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0462	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.0347	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0513	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.022	[0.015-0.029] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	1E-10		0.1485	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0511	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	1E-10		0.0965	[0.067-0.126] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.1058	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.0732	[0.051-0.096] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0879	[0.061-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0542	[0.038-0.071] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.042	[0.029-0.055] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0505	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0311	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0584	[0.041-0.076] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	1E-10		0.1678	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.2541	[0.18-0.33] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0475	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	1E-10		0.0813	[0.056-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.1061	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.0611	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.0524	[0.036-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0456	[0.032-0.06] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	1E-10		0.0475	[0.033-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0307	[0.021-0.04] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	1E-10		0.2511	[0.17-0.33] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.1061	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	1E-10		0.0217	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.051	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	1E-10		0.0691	[0.048-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.2538	[0.18-0.33] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0511	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.048	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0985	[0.068-0.129] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0556	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0473	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0586	[0.041-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0611	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0307	[0.021-0.04] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0698	[0.048-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	1E-10		0.0509	[0.035-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.1072	[0.074-0.14] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	1E-10		0.0619	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.114	[0.079-0.149] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0506	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-T	NR	2E-10		0.0511	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.037	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.043	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0757	[0.053-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0299	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0528	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	1E-10		0.1065	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0669	[0.046-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	1E-10		0.0559	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	1E-10		0.0362	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-A	NR	2E-10		0.0347	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	2E-10		0.0611	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-C	NR	2E-10		0.0679	[0.047-0.089] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589564-G	NR	1E-10		0.2511	[0.17-0.33] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624152	116624153	rs6589564	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (femoral neck) in inflammatory bowel disease	254 Japanese ancestry cases	NA	11q23.3	BUD13	rs6589564-C	NR	3E-6		0.4551	[NR] unit decrease	Affymetrix [4384682] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0691	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.06	[0.044-0.076] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0691	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0783	[0.058-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0824	[0.061-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0892	[0.066-0.113] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-A	NR	7E-14		0.1813	[0.13-0.23] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0655	[0.048-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0656	[0.049-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0888	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-A	NR	7E-14		0.0617	[0.046-0.078] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0485	[0.036-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.088	[0.065-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0518	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0485	[0.036-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-A	NR	7E-14		0.0898	[0.066-0.113] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0611	[0.045-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0555	[0.041-0.07] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0543	[0.04-0.069] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0808	[0.06-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	7E-14		0.0519	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-C	NR	7E-14		0.0925	[0.068-0.117] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-T	NR	7E-14		0.1071	[0.079-0.135] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180326-G	NR	6E-14		0.0838	[0.062-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624702	116624703	rs180326	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Triglyceride levels	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	11q23.3	BUD13	rs180326-C	0.22	2E-44		0.06	[0.05-0.06] unit increase	Illumina [4642479] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0785	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0783	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0582	[0.04-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.1039	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0618	[0.042-0.081] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.0842	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.1133	[0.078-0.149] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0643	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.0786	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0523	[0.036-0.069] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0545	[0.037-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.05	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	5E-10		0.0782	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0785	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	5E-10		0.0689	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.046	[0.031-0.061] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0634	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0473	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.0708	[0.048-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	5E-10		0.0785	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0635	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0473	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.06	[0.041-0.079] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.0389	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0476	[0.033-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0519	[0.036-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0842	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0551	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.038	[0.026-0.05] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0787	[0.054-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.0489	[0.033-0.064] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0787	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0622	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0627	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0399	[0.027-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.0842	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.0785	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0712	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0784	[0.054-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.1045	[0.072-0.137] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.0649	[0.045-0.085] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0285	[0.019-0.038] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0509	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.0755	[0.052-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.0786	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	5E-10		0.0559	[0.038-0.074] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.0774	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	4E-10		0.0784	[0.054-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.0364	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-G	NR	5E-10		0.0765	[0.052-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	5E-10		0.1064	[0.073-0.14] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0478	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.1046	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-C	NR	4E-10		0.1316	[0.09-0.173] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.0312	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.0479	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.1036	[0.071-0.136] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	5E-10		0.0476	[0.033-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0635	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-A	NR	4E-10		0.0559	[0.038-0.074] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116624726	116624727	rs7930786	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7930786-T	NR	4E-10		0.0627	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116625874	116625875	rs12421652	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs12421652-C	NR	5E-27		0.1047	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116625874	116625875	rs12421652	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs12421652-C	NR	5E-27		0.0605	[0.05-0.071] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116625874	116625875	rs12421652	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs12421652-T	NR	5E-27		0.0882	[0.072-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116625874	116625875	rs12421652	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs12421652-C	NR	5E-27		0.0729	[0.06-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116625874	116625875	rs12421652	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs12421652-C	NR	5E-27		0.1243	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	3E-11		0.155903	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	1E-10		0.146889	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	7E-11		0.155529	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	3E-11		0.153706	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	2E-11		0.158346	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	2E-11		0.154502	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	3E-10		0.131691	[0.091-0.173] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	2E-10		0.108265	[0.075-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_17:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	2E-10		0.126327	[0.088-0.165] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11825181-A	NR	1E-12		0.124401	[0.09-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q23.3	APOA5	rs11825181-A	0.08	3E-11	(1-linoleoylglycerol (1-monolinolein))	0.076	[0.054-0.098] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1474	chr11	116626257	116626258	rs11825181	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	BUD13	rs11825181-A	NR	3E-9		0.32	[0.22-0.42] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116626734	116626735	rs180322	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs180322-C	NR	6E-14		0.1072	[0.079-0.135] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116627054	116627055	rs4938309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938309-G	NR	2E-11		0.0543	[0.038-0.07] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116627054	116627055	rs4938309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938309-G	NR	2E-11		0.0501	[0.035-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116627054	116627055	rs4938309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938309-C	NR	2E-11		0.0522	[0.037-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116627054	116627055	rs4938309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938309-T	NR	2E-11		0.0497	[0.035-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116627054	116627055	rs4938309	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938309-T	NR	2E-11		0.0477	[0.034-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0789	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0636	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0602	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	5E-12		0.2247	[0.16-0.29] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0237	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	6E-12		0.0462	[0.033-0.059] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.079	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0591	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0409	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0395	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	6E-12		0.0407	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0785	[0.056-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	6E-12		0.0462	[0.033-0.059] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	6E-12		0.0496	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	5E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	6E-12		0.0599	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.1936	[0.14-0.25] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0604	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	6E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0636	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0636	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0668	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0407	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.1656	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	6E-12		0.1195	[0.086-0.153] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0491	[0.035-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0793	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0489	[0.035-0.063] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0921	[0.066-0.118] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0752	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0854	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0596	[0.043-0.076] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.063	[0.045-0.081] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0569	[0.041-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0634	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0674	[0.048-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0636	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.057	[0.041-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	5E-12		0.0742	[0.053-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0674	[0.048-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0585	[0.042-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0636	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0791	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	6E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.1853	[0.13-0.24] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0343	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0809	[0.058-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	6E-12		0.0649	[0.046-0.083] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	6E-12		0.0495	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.1861	[0.13-0.24] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	5E-12		0.0496	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0717	[0.051-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-G	NR	5E-12		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.038	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0744	[0.053-0.096] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-C	NR	5E-12		0.0742	[0.053-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0737	[0.053-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-T	NR	5E-12		0.0378	[0.027-0.049] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116631706	116631707	rs3825041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3825041-A	NR	5E-12		0.0675	[0.048-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116632797	116632798	rs11602240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602240-G	NR	1E-29		0.1348	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116632797	116632798	rs11602240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602240-T	NR	1E-29		0.0674	[0.056-0.079] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116632797	116632798	rs11602240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602240-C	NR	1E-29		0.1348	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116632797	116632798	rs11602240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602240-C	NR	1E-29		0.0892	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116632797	116632798	rs11602240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602240-G	NR	1E-29		0.1243	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116633579	116633580	rs11216131	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	11q23.3	BUD13	rs11216131-?	0.0	1E-10				Affymetrix [547296]	N
1474	chr11	116633824	116633825	rs918144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs918144-G	NR	6E-10		0.0684	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116633824	116633825	rs918144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs918144-C	NR	6E-10		0.0618	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116633824	116633825	rs918144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs918144-A	NR	6E-10		0.1025	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q23.3		rs11820589-A	NR	2E-20		0.0426	[0.034-0.052] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	1E-10		0.146206	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	1E-12		0.16758	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	5E-12		0.15877	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	5E-12		0.165564	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	2E-12		0.163985	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	4E-10		0.144826	[0.099-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	4E-10		0.142741	[0.098-0.187] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	6E-12		0.163078	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	1E-12		0.164681	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	2E-10		0.134993	[0.093-0.177] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	2E-10		0.133579	[0.092-0.175] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	6E-11		0.134001	[0.094-0.174] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	4E-11		0.113575	[0.08-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	3E-10		0.107283	[0.074-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_17:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	1E-10		0.127523	[0.089-0.166] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	2E-10		0.131999	[0.091-0.173] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11820589-A	NR	1E-12		0.125458	[0.091-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116633861	116633862	rs11820589	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q23.3	BUD13	rs11820589-A	NR	6E-9	(TG-GLUC)	0.32	[0.20-0.44] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116634556	116634557	rs17119975	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs17119975-G	NR	4E-22		0.1684	[0.13-0.2] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116634556	116634557	rs17119975	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs17119975-C	NR	4E-22		0.0825	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116634556	116634557	rs17119975	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs17119975-C	NR	4E-22		0.0904	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116634556	116634557	rs17119975	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs17119975-A	NR	4E-22		0.0512	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116635281	116635282	rs79624460	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs79624460-?	NR	1E-6		0.05268808	[0.031-0.074] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116635950	116635951	rs79610135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs79610135-C	NR	1E-10		0.0414	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1474	chr11	116637145	116637146	rs12294259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	ZNF259	rs12294259-?	NR	2E-8	(TAG 52:3)	0.39194718	[0.26-0.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	9E-12		0.202022	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-12		0.208429	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-10		0.189436	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	5E-11		0.192897	[0.14-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	3E-33		0.1267	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	5E-34		0.0926	[0.078-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	4E-34		0.0769	[0.065-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	4E-33		0.0904	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	2E-33		0.1163	[0.097-0.135] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	7E-34		0.079	[0.066-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	4E-33		0.1739	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	1E-32		0.1732	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	9E-34		0.0785	[0.066-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	4E-34		0.0891	[0.075-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	7E-34		0.0825	[0.069-0.096] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	6E-34		0.1269	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	5E-33		0.1353	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	1E-33		0.175	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	6E-33		0.0996	[0.083-0.116] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	3E-33		0.0783	[0.066-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-33		0.0779	[0.065-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	6E-33		0.0841	[0.07-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	7E-33		0.0984	[0.082-0.114] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	3E-12		0.201363	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	4E-15		0.18552	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	7E-12		0.163719	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	3E-15		0.191561	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	7E-15		0.182541	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	1E-33		0.0788	[0.066-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	9E-34		0.0757	[0.064-0.088] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	6E-34		0.0882	[0.074-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	4E-33		0.0904	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	4E-33		0.0904	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	5E-34		0.1357	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	1E-33		0.0924	[0.078-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	1E-32		0.1342	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	3E-33		0.0909	[0.076-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	7E-33		0.0904	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	4E-34		0.0882	[0.074-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	1E-32		0.1668	[0.14-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	6E-34		0.1284	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	3E-33		0.0779	[0.065-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-34		0.1383	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	1E-32		0.0892	[0.074-0.104] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-34		0.0915	[0.077-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	9E-34		0.0908	[0.076-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	4E-12		0.162584	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-10		0.152661	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-13		0.178962	[0.13-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	3E-12		0.160827	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	1E-13		0.177865	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	5E-14		0.176398	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	8E-34		0.088	[0.074-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	7E-33		0.173	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	7E-33		0.135	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	4E-33		0.0777	[0.065-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	5E-12		0.166237	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	5E-33		0.0825	[0.069-0.096] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	1E-33		0.0776	[0.065-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	1E-14		0.179711	[0.13-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-14		0.165253	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	5E-15		0.166218	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	8E-15		0.164064	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	1E-12		0.153701	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-10		0.14512	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-33		0.0905	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-33		0.0905	[0.076-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	2E-33		0.1246	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-34		0.0881	[0.074-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	1E-33		0.0759	[0.064-0.088] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	4E-34		0.091	[0.076-0.106] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	3E-33		0.0787	[0.066-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	3E-33		0.0777	[0.065-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	7E-34		0.0897	[0.075-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	3E-33		0.091	[0.076-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	6E-33		0.0779	[0.065-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	4E-33		0.0777	[0.065-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	2E-10		0.13253	[0.092-0.173] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	3E-33		0.1283	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	2E-33		0.1516	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	7E-34		0.0918	[0.077-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-C	NR	2E-33		0.1359	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	6E-34		0.0788	[0.066-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	5E-34		0.1356	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-A	NR	4E-33		0.0778	[0.065-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-T	NR	2E-33		0.1118	[0.094-0.13] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	1E-33		0.0999	[0.084-0.116] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10790162-G	NR	5E-34		0.08	[0.067-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790162-A	NR	1E-11		0.121177	[0.086-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q23.3		rs10790162-A	0.0856	3E-77		0.0894	[0.08-0.099] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11q23.3		rs10790162-A	0.1149	2E-30		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs10790162-A	0.22	2E-64	(BMI unadjusted)	0.214	[0.19-0.24] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	BUD13	rs10790162-A	NR	7E-16		0.39	[0.29-0.49] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	BUD13	rs10790162-A	NR	5E-9		0.25	[0.17-0.33] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116639103	116639104	rs10790162	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	11q23.3	BUD13	rs10790162-A	NR	3E-15		0.38	[0.28-0.48] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	3E-26		0.1325	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	3E-26		0.135	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	4E-26		0.0724	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-G	NR	4E-26		0.125	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	3E-26		0.0784	[0.064-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	3E-26		0.1341	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	4E-26		0.0724	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	4E-26		0.0691	[0.056-0.082] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	4E-26		0.0691	[0.056-0.082] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	3E-26		0.1324	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-T	NR	3E-26		0.0635	[0.052-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	4E-26		0.0674	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-G	NR	3E-26		0.0837	[0.068-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-G	NR	3E-26		0.1214	[0.099-0.144] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	4E-26		0.0635	[0.052-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	3E-26		0.0731	[0.06-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-G	NR	4E-26		0.0784	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-C	NR	3E-26		0.078	[0.063-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	3E-26		0.0806	[0.066-0.095] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	3E-26		0.0625	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-A	NR	4E-26		0.1501	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-G	NR	4E-26		0.0785	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639691	116639692	rs1268353	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1268353-T	NR	3E-26		0.0618	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-G	NR	1E-26		0.0725	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-C	NR	1E-26		0.0725	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-T	NR	1E-26		0.1142	[0.093-0.135] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-T	NR	1E-26		0.0794	[0.065-0.094] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-A	NR	1E-26		0.0817	[0.067-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116639940	116639941	rs1263149	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1263149-C	NR	1E-26		0.0725	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640061	116640062	rs622604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs622604-T	NR	1E-10		0.0562	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640061	116640062	rs622604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs622604-A	NR	1E-10		0.0555	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640061	116640062	rs622604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs622604-C	NR	1E-10		0.0555	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640061	116640062	rs622604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs622604-C	NR	1E-10		0.0793	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640061	116640062	rs622604	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs622604-A	NR	1E-10		0.0393	[0.027-0.051] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640093	116640094	rs610675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs610675-C	NR	7E-11		0.0796	[0.056-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640093	116640094	rs610675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs610675-C	NR	7E-11		0.0464	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640093	116640094	rs610675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs610675-T	NR	7E-11		0.0882	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640093	116640094	rs610675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs610675-C	NR	7E-11		0.0533	[0.037-0.069] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640093	116640094	rs610675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs610675-G	NR	7E-11		0.0376	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs6589565-A	0.0678239	3E-24		0.0772777	[0.062-0.092] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs6589565-A	0.0678239	5E-21		0.0711968	[0.056-0.086] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.053	[0.037-0.069] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.075	[0.052-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0345	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.0553	[0.038-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0688	[0.048-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0475	[0.033-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0568	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.1056	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.0379	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.1059	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.049	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0877	[0.061-0.115] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0425	[0.029-0.056] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.1057	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0716	[0.05-0.094] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.0377	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0813	[0.056-0.106] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0478	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0566	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.1473	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0537	[0.037-0.07] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0823	[0.057-0.108] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0288	[0.02-0.038] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0699	[0.048-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.0495	[0.034-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0509	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0688	[0.048-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.1065	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0701	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0826	[0.057-0.108] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.03	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.046	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.1476	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0429	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0408	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0548	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.079	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0424	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0413	[0.029-0.054] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0489	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.1057	[0.073-0.138] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.082	[0.057-0.107] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0542	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.051	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0519	[0.036-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0501	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.1062	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.1362	[0.094-0.178] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.1162	[0.081-0.152] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.1057	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.027	[0.019-0.035] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.051	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0363	[0.025-0.047] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0514	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0474	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0284	[0.02-0.037] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0869	[0.06-0.114] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0808	[0.056-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.1024	[0.071-0.134] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0712	[0.049-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.1067	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-C	NR	2E-10		0.0567	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-A	NR	2E-10		0.1058	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-G	NR	2E-10		0.0678	[0.047-0.089] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640236	116640237	rs6589565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589565-T	NR	2E-10		0.0325	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640367	116640368	rs623908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs623908-G	NR	1E-10		0.0491	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640367	116640368	rs623908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs623908-T	NR	1E-10		0.0603	[0.042-0.079] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640367	116640368	rs623908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs623908-A	NR	1E-10		0.0705	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116640367	116640368	rs623908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs623908-T	NR	1E-10		0.0422	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116640367	116640368	rs623908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs623908-T	NR	1E-10		0.081	[0.057-0.106] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116641027	116641028	rs1263151	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	11q23.3		rs1263151-?	NR	3E-9		0.00539971	[0.0036-0.0072] unit increase	NR [NR]	N
1474	chr11	116646061	116646062	rs11216135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216135-G	NR	3E-30		0.0903	[0.075-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116646061	116646062	rs11216135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216135-T	NR	3E-30		0.1274	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116646061	116646062	rs11216135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216135-G	NR	3E-30		0.1057	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116646857	116646858	rs11602073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602073-T	NR	1E-29		0.1318	[0.11-0.15] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116646857	116646858	rs11602073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602073-T	NR	1E-29		0.0796	[0.066-0.093] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116646857	116646858	rs11602073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11602073-T	NR	1E-29		0.0741	[0.061-0.087] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0834	[0.061-0.106] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.1279	[0.094-0.162] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0459	[0.034-0.058] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.1911	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0956	[0.07-0.121] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.104	[0.076-0.132] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0762	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.1448	[0.11-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0906	[0.066-0.115] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0571	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0759	[0.056-0.096] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.1696	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.1257	[0.092-0.159] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0489	[0.036-0.062] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0569	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.057	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0449	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0573	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0511	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0769	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0807	[0.059-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0478	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0445	[0.033-0.056] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0776	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0566	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0612	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0773	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.081	[0.059-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0962	[0.07-0.122] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.1757	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0447	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0603	[0.044-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.1265	[0.093-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0356	[0.026-0.045] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0534	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.129	[0.094-0.164] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.166	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.1032	[0.076-0.131] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0558	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0793	[0.058-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.059	[0.043-0.075] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0829	[0.061-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0595	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0581	[0.042-0.074] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0581	[0.042-0.074] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.0594	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0446	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-C	NR	3E-13		0.0769	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0708	[0.052-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.0729	[0.053-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.0774	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-A	NR	3E-13		0.1287	[0.094-0.163] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-G	NR	3E-13		0.081	[0.059-0.103] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2160669-T	NR	3E-13		0.1913	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs2160669-?	NR	2E-70		0.1128246	[0.1-0.13] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs2160669-?	NR	5E-11		3.475923	[2.44-4.51] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs2160669-?	NR	5E-14		1.299101	[0.96-1.64] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q23.3		rs2160669-T	0.9154	1E-83		0.0831	[0.075-0.092] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	8,743 East Asian ancestry individuals	11q23.3	A4, C3, A1, APOA5	rs2160669-?	0.73	3E-128				NR [NR] (imputed)	N
1474	chr11	116647606	116647607	rs2160669	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	ZNF259, APOA5	rs2160669-G	0.168	9E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-132		0.14845	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-226		0.184557	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs964184-G	0.133094	3E-77		0.109476	[0.098-0.121] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs964184-G	0.132705	2E-286		0.206624	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-169		0.162846	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-247		0.196508	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-318		0.219829	[0.21-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-172		0.160419	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-123		0.140669	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-120		0.138045	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-286		0.206906	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-187		0.170258	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-284		0.213417	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-274		0.20557	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-208		0.182425	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-365		0.239797	[0.23-0.25] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-299		0.218138	[0.21-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-323		0.225937	[0.21-0.24] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-297		0.217562	[0.21-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-240		0.196592	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-263		0.206952	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-261		0.201964	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-174		0.167548	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-146		0.14895	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-201		0.177775	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-296		0.21481	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-209		0.18392	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-198		0.178296	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-287		0.215448	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-305		0.218989	[0.21-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-67		0.103278	[0.092-0.115] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-276		0.207732	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-59		0.0890027	[0.078-0.1] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-237		0.197198	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	9E-35		0.0748199	[0.063-0.087] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-183		0.174512	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-42		0.0826827	[0.071-0.095] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-69		0.105373	[0.094-0.117] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-276		0.208614	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-63		0.0896966	[0.079-0.1] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-240		0.193744	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-253		0.202522	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	6E-194		0.17836	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-20		0.0559473	[0.044-0.068] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	5E-130		0.145494	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-32		0.0710628	[0.059-0.083] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	2E-284		0.203257	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	1E-11		0.0407578	[0.029-0.053] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	4E-86		0.114932	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	7E-174		0.163581	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	2E-120		0.136188	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	1E-37		0.0746316	[0.063-0.086] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	2E-11		0.0388695	[0.027-0.05] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	5E-237		0.191265	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	5E-14		0.044138	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	5E-32		0.0691171	[0.058-0.081] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-37		0.0759788	[0.064-0.088] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	5E-143		0.150407	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-92		0.120894	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs964184-G	0.133094	2E-25		0.0633767	[0.051-0.075] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs964184-G	0.132705	1E-34		0.0686146	[0.058-0.08] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-201		0.175329	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-189		0.17829	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-78		0.10935	[0.098-0.121] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-64		0.102496	[0.091-0.114] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-111		0.129618	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-192		0.174338	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-106		0.133256	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-38		0.0762315	[0.065-0.088] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs964184-G	0.133709	1E-88		0.121275	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-44		0.0855891	[0.074-0.098] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-84		0.116327	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-273		0.207097	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-57		0.0870437	[0.076-0.098] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-135		0.15031	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-9		0.03579	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-123		0.143095	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-33		0.072741	[0.061-0.085] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-293		0.214639	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-56		0.084656	[0.074-0.095] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-280		0.208681	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-226		0.192485	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	7E-121		0.138873	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	3E-91		0.117565	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	7E-257		0.205217	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	1E-130		0.145189	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-58		0.0871971	[0.077-0.098] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-69		0.10555	[0.094-0.117] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-129		0.146102	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs964184-G	0.133094	2E-60		0.0965108	[0.085-0.108] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs964184-G	0.132705	8E-13		0.0386281	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-208		0.177826	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-300		0.216949	[0.21-0.23] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-143		0.14759	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-298		0.214009	[0.2-0.23] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-53		0.0824385	[0.072-0.093] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-9		0.0359281	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-273		0.204	[0.19-0.22] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-56		0.0893976	[0.078-0.1] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs964184-G	0.133709	3E-13		0.0441827	[0.032-0.056] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-206		0.18513	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-36		0.0753614	[0.064-0.087] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-274		0.208041	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-85		0.111217	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-65		0.103607	[0.092-0.116] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-78		0.113818	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-279		0.210004	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-72		0.0957812	[0.085-0.106] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-285		0.211165	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-186		0.175486	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-14		0.0447461	[0.033-0.056] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-24		0.0542852	[0.044-0.065] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q23.3		rs964184-G	0.132767	4E-23		0.0569434	[0.046-0.068] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	11q23.3		rs964184-G	0.132825	2E-27		0.0565271	[0.046-0.067] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-54		0.092437	[0.081-0.104] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-286		0.211109	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-31		0.0635368	[0.053-0.074] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-255		0.203994	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-55		0.0949874	[0.083-0.107] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-133		0.148789	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-37		0.0778862	[0.066-0.09] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-290		0.213424	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-28		0.0669278	[0.055-0.079] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-56		0.0840656	[0.074-0.095] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-264		0.202896	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-182		0.173721	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-35		0.0753422	[0.063-0.087] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-230		0.184689	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs964184-G	0.133094	2E-141		0.147092	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs964184-G	0.132705	1E-70		0.107574	[0.096-0.119] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-88		0.119718	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	6E-217		0.191112	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-163		0.162181	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-216		0.17856	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-118		0.140234	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-244		0.196127	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-71		0.104094	[0.093-0.116] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-58		0.097942	[0.086-0.11] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-176		0.163834	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-98		0.124816	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-220		0.189545	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-88		0.108625	[0.098-0.119] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-117		0.13949	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-62		0.101203	[0.089-0.113] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-55		0.0955648	[0.084-0.108] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-225		0.192427	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-104		0.116273	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-289		0.213297	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-92		0.123792	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-24		0.061062	[0.049-0.073] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-69		0.0962333	[0.086-0.107] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	4E-230		0.185915	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs964184-G	0.133094	1E-129		0.140788	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-149		0.153766	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-178		0.170261	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-198		0.171702	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-38		0.0788465	[0.067-0.091] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-236		0.189786	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-32		0.0708663	[0.059-0.083] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-48		0.0865408	[0.075-0.098] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	7E-179		0.163011	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-178		0.167998	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-252		0.201522	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	9E-90		0.110312	[0.1-0.121] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-98		0.127681	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-28		0.067085	[0.055-0.079] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	5E-20		0.0556751	[0.044-0.068] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-32		0.0724119	[0.06-0.084] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-259		0.204213	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-96		0.111733	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-292		0.214053	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	3E-271		0.199677	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	8E-22		0.0569949	[0.045-0.069] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	2E-52		0.0821043	[0.072-0.093] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	11q23.3		rs964184-G	0.13274	1E-35		0.0756427	[0.064-0.088] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	11q23.3		rs964184-G	0.132744	5E-26		0.0637363	[0.052-0.076] unit increase	NR [11722792] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA5	5,367 Icelandic ancestry individuals	NA	11q23.3		rs964184-G	0.1194	4E-41		0.378504	[0.32-0.43] unit decrease	Illumina [7506463] (imputed)	N
1474	chr11	116648916	116648917	rs964184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,364 Icelandic ancestry individuals	NA	11q23.3		rs964184-G	0.1194	2E-16		0.233837	[0.18-0.29] unit increase	Illumina [7506463] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large VLDL particle concentration	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	3E-14		0.243522	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866395215	6E-18		0.27239	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	3E-14		0.243427	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	2E-17		0.268125	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866280193	2E-15		0.250429	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small HDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866978782	2E-15		0.251494	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	4E-16		0.256688	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium HDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866395215	4E-15		0.248309	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	3E-14		0.240874	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	4E-15		0.252809	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	2E-16		0.259075	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in HDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	5E-14		0.237927	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	3E-14		0.243457	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	6E-18		0.272561	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-16		0.257714	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	2E-14		0.242676	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	4E-15		0.253272	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total fatty acids	4,348 individuals	NA	11q23.3		rs964184-C	0.866437398	4E-13		0.230852	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	5E-14		0.24117	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-15		0.249463	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	7E-16		0.254839	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	2E-14		0.242815	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	3E-15		0.254212	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	2E-15		0.251757	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small VLDL particle concentration	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	6E-18		0.272513	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial saturated fatty acids	4,348 individuals	NA	11q23.3		rs964184-C	0.866350715	9E-10		0.195678	[0.13-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	1E-14		0.246742	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	1E-18		0.278235	[0.22-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	2E-16		0.259653	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	2E-14		0.243257	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	2E-15		0.256718	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial monounsaturated fatty acids (16:1, 18:1)	4,348 individuals	NA	11q23.3		rs964184-C	0.866382029	1E-13		0.236426	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium VLDL particle concentration	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-16		0.257925	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of VLDLD particles	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	1E-11		0.214372	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-8		0.174827	[0.11-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large VLDL particle concentration	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	2E-14		0.2424	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial glycoprotein acetyls (mainly a1-acid glycoprotein)	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	1E-14		0.243932	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	5E-14		0.241258	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	4E-18		0.274218	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-16		0.258074	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	3E-14		0.241494	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	2E-15		0.254853	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial chylomicrons and extremely large VLDL particle concentration	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	4E-15		0.253057	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.86539624	6E-14		0.240466	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	3E-15		0.249339	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.865620642	2E-14		0.243362	[0.18-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in chylomicrons and extremely large VLDL	4,348 individuals	NA	11q23.3		rs964184-C	0.866050551	1E-14		0.248589	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein B	4,348 individuals	NA	11q23.3		rs964184-C	0.866310948	1E-12		0.225239	[0.16-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large VLDL particle concentration	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	1E-17		0.276442	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867331995	9E-19		0.26744	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	3E-17		0.272466	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	11q23.3		rs964184-C	0.870130026	5E-9		0.182337	[0.12-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	1E-18		0.266094	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867459294	2E-17		0.256992	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small HDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867502647	1E-15		0.243149	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	1E-16		0.251297	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium HDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867468207	1E-17		0.25942	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	4E-14		0.232621	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.8625877	9E-16		0.263235	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867670755	7E-12		0.208304	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867282425	3E-17		0.255476	[0.2-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in HDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867282425	2E-15		0.240291	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	7E-18		0.277732	[0.21-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	1E-20		0.281312	[0.22-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	4E-17		0.254475	[0.2-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	2E-14		0.235334	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.862587706	7E-16		0.263979	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	11q23.3		rs964184-C	0.867150276	7E-19		0.268726	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	1E-18		0.283329	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	4E-19		0.270622	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	1E-17		0.258556	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	4E-15		0.24171	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.862587706	7E-16		0.264063	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867282425	8E-19		0.267582	[0.21-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small VLDL particle concentration	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	2E-20		0.280025	[0.22-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting saturated fatty acids	4,734 individuals	NA	11q23.3		rs964184-C	0.867129729	2E-15		0.242277	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	7E-19		0.2859	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	3E-21		0.285737	[0.23-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	1E-17		0.258354	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	1E-14		0.237994	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.862587706	5E-16		0.265944	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting monounsaturated fatty acids (16:1, 18:1)	4,734 individuals	NA	11q23.3		rs964184-C	0.86715812	9E-17		0.252794	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium VLDL particle concentration	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	4E-17		0.254002	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of VLDLD particles	4,734 individuals	NA	11q23.3		rs964184-C	0.867282425	4E-12		0.210396	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large VLDL particle concentration	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	2E-14		0.234751	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glycoprotein acetyls (mainly a1-acid glycoprotein)	4,734 individuals	NA	11q23.3		rs964184-C	0.867254384	2E-13		0.223051	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	2E-18		0.282737	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	6E-21		0.284139	[0.23-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	3E-17		0.255072	[0.2-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	1E-14		0.236715	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.862587706	5E-15		0.256669	[0.19-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting chylomicrons and extremely large VLDL particle concentration	4,734 individuals	NA	11q23.3		rs964184-C	0.862587706	8E-16		0.263911	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865108141	2E-18		0.282596	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.867403216	4E-16		0.246146	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.86717019	5E-18		0.261839	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.865964278	1E-15		0.246669	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in chylomicrons and extremely large VLDL	4,734 individuals	NA	11q23.3		rs964184-C	0.862552865	3E-16		0.267623	[0.2-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	11q23.3		rs964184-C	0.867282425	3E-16		0.247034	[0.19-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q23.3		rs964184-C	NR	1E-1483		0.2239	[0.22-0.23] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-17		0.0222	[0.017-0.027] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	11q23.3		rs964184-C	NR	2E-9		0.0442	[0.03-0.059] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	11q23.3		rs964184-C	NR	2E-12		0.0451	[0.033-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	11q23.3		rs964184-C	NR	6E-94		0.1328	[0.12-0.15] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q23.3		rs964184-C	NR	2E-15		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-10		0.140965	[0.098-0.184] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-11		0.146738	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-14		0.1699	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_54:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-14		0.168555	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-12		0.15213	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-16		0.178961	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-19		0.194423	[0.15-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-13		0.158484	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-12		0.153436	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	8E-17		0.184798	[0.14-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-21		0.205476	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-15		0.174189	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-12		0.161363	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-13		0.156413	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-16		0.1799	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-12		0.156518	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-13		0.158767	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-14		0.169057	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-10		0.139335	[0.096-0.183] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-10		0.141783	[0.098-0.185] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_48:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-10		0.144588	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_47:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-11		0.143063	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	9E-16		0.164415	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	8E-13		0.156869	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-16		0.140484	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0693	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0454	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0616	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0517	[0.035-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0679	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0627	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.07	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0744	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0641	[0.044-0.084] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0823	[0.056-0.109] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0619	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0792	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.077	[0.052-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-16		0.170527	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-21		0.202022	[0.16-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-12		0.154265	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-12		0.143849	[0.1-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_41:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	5E-11		0.141969	[0.1-0.184] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-15		0.165047	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-12		0.153535	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	5E-12		0.149555	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-17		0.146547	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-15		0.127143	[0.096-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-25		0.181198	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-10		0.111273	[0.077-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-15		0.132262	[0.099-0.165] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-24		0.177785	[0.14-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-22		0.163159	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-14		0.1364	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-14		0.122973	[0.091-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-27		0.192188	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-27		0.186595	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-11		0.115516	[0.082-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-16		0.140565	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0746	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0682	[0.046-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0592	[0.04-0.078] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0795	[0.054-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0455	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0489	[0.033-0.064] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0679	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0811	[0.055-0.107] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0989	[0.067-0.13] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0678	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0567	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.071	[0.048-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0632	[0.043-0.083] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0576	[0.039-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0453	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0688	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0503	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0403	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0688	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0791	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0597	[0.041-0.079] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0467	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0792	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0463	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0793	[0.054-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0372	[0.025-0.049] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.065	[0.044-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0355	[0.024-0.047] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-11		0.115897	[0.082-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-13		0.126384	[0.092-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-22		0.166606	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_30:0_[M+H]1+/Phosphatidylethanolamine_33:0_[M+H]1+/Phosphatidate_35:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-12		0.125595	[0.091-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+H]1+/Phosphatidylcholine-P_44:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-11		0.147236	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:6_[M+H]1+/Phosphatidylcholine-P_40:5_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-12		0.151185	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_40:5_[M+H]1+/Phosphatidylcholine-P_40:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-11		0.140651	[0.098-0.183] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_38:4_[M+H]1+/Phosphatidylcholine-P_38:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-10		0.140383	[0.097-0.183] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-15		0.141268	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-17		0.146833	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-13		0.123095	[0.09-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-21		0.169912	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-16		0.148096	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	8E-23		0.165739	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-25		0.180978	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-25		0.176152	[0.14-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:1_[M+H]1+/Phosphatidylcholine-P_18:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-10		0.107203	[0.074-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.1013	[0.069-0.133] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:3)_[M+H]1+/Phosphatidylethanolamine-P(37:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0688	[0.047-0.091] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0768	[0.052-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	8E-21		0.165075	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0746	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0966	[0.066-0.127] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_20:4_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-11		0.114514	[0.082-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:1_[M+H]1+/Lysophosphatidylethanolamine_19:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-11		0.109275	[0.078-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-14		0.0950231	[0.07-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-27		0.185192	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-15		0.13637	[0.1-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-16		0.130352	[0.099-0.162] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	4E-24		0.15957	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-24		0.158102	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-15		0.131213	[0.099-0.164] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-16		0.12738	[0.096-0.158] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-22		0.150318	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-19		0.143072	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:0_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-13		0.127011	[0.094-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-12		0.118074	[0.085-0.151] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-14		0.128192	[0.095-0.161] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0752	[0.051-0.099] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0789	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0626	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0707	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0692	[0.047-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0387	[0.026-0.051] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0793	[0.054-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0823	[0.056-0.109] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0705	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0655	[0.045-0.086] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0499	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.049	[0.033-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0663	[0.045-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.0496	[0.034-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-13		0.109161	[0.08-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	3E-19		0.135949	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	5E-19		0.113172	[0.088-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-18		0.108321	[0.084-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_17:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	2E-14		0.112324	[0.084-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	1E-16		0.126352	[0.096-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0958	[0.065-0.126] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0407	[0.028-0.054] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0635	[0.043-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0583	[0.04-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0707	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-C	NR	7E-10		0.071	[0.048-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0747	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-G	NR	7E-10		0.0737	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0682	[0.046-0.09] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-T	NR	7E-10		0.0774	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs964184-A	NR	7E-10		0.0893	[0.061-0.118] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs964184-G	NR	6E-23		0.1287	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116648916	116648917	rs964184	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	11q23.3		rs964184-G	0.129	3E-14		0.095	[0.071-0.119] unit increase	Affymetrix [812428]	N
1474	chr11	116648916	116648917	rs964184	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q23.3		rs964184-G	0.132	7E-16		0.13	[-0.16--0.1] % decrease	Affymetrix [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	11q23.3		rs964184-G	NR	1E-167		24.631317	mg/dl increase	NR [5712318]	N
1474	chr11	116648916	116648917	rs964184	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q23.3	ZPR1	rs964184-G	0.13	2E-19		9.01	z-score increase	Affymetrix [4314223] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	11q23.3	ZPR1	rs964184-G	0.177211	4E-7		1.05	[1.03-1.08]	NR [8126035] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	11q23.3	ZPR1	rs964184-?		7E-15	(EA)	0.26723298	[0.2-0.33] unit decrease	Illumina [13620258] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	11q23.3		rs964184-C	0.84	3E-8		0.0658	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	8E-15	(palmitoleoyl-linoleoyl-glycerol (16:1/18:2) [1]*)	0.201	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	4E-29	(oleoyl-linoleoyl-glycerol (18:1/18:2) [1])	0.288	[0.24-0.34] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	4E-25	(linoleoyl-linoleoyl-glycerol (18:2/18:2) [1]*)	0.267	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	4E-12	(palmitoyl-linoleoyl-glycerol (16:0/18:2) [1]*)	0.179	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	3E-13	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.192	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	2E-13	(palmitoyl-linoleoyl-glycerol (16:0/18:2) [2]*)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	1E-26	(oleoyl-linoleoyl-glycerol (18:1/18:2) [2])	0.275	[0.22-0.33] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q23.3	ZNF259	rs964184-G	0.256368	1E-10	(1-stearoyl-2-linoleoyl-GPI (18:0/18:2))	0.169	[0.12-0.22] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q23.3	ZNF259	rs964184-G	0.256368	3E-13	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.192	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q23.3	ZNF259	rs964184-G	0.256368	1E-10	(1-stearoyl-2-linoleoyl-GPI (18:0/18:2))	0.169	[0.12-0.22] unit increase	Illumina [13039987] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	11q23.3	ZNF259, APOA5	rs964184-G	0.1396	5E-19		1.18	1.14-1.23	Affymetrix [18689289] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866596	2E-43		0.045497097	[0.039-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866597	4E-41		0.044195905	[0.038-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866625	1E-43		0.04512766	[0.039-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.867096	5E-138		0.083061725	[0.077-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866653	3E-63		0.05506972	[0.049-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866687	2E-45		0.046754625	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.86708	2E-20		0.030779773	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866612	7E-13		0.0225132	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-G	0.866636	6E-46		0.0455783	[0.039-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866645	2E-28		0.036180347	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q23.3	ZNF259	rs964184-C	0.866649	7E-28		0.03586936	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.13965	3E-49				Affymetrix, Illumina [22063850] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q23.3	NR	rs964184-G	0.134304	1E-50		0.041293	[0.036-0.047] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs964184-C	0.83246	1E-45				Affymetrix, Illumina [24588908] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs964184-C	0.841099	1E-12				Affymetrix, Illumina [23467995] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.865889	5E-13		0.019837	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs964184-C	0.835792	4E-15				Affymetrix, Illumina [24246363] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs964184-C	0.833572	1E-50				Affymetrix, Illumina [21126107] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.866487	4E-47		0.042485	[0.037-0.048] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	Triglyceride levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	11q23.3	APOA1	rs964184-G	0.44	2E-29		8.47	NR z score increase	Affymetrix [659492]	N
1474	chr11	116648916	116648917	rs964184	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	Total cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	11q23.3	APOA1	rs964184-G	0.44	2E-6		4.04	NR z score increase	Affymetrix [659492]	N
1474	chr11	116648916	116648917	rs964184	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	11q23.3	ZPR1, APOA1, APOA4, APOA5, APOC3	rs964184-C	0.86	2E-28		0.29	[0.24-0.34] unit decrease	Illumina [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Fasting triglyceride levels	5,630 individuals	NA	11q23.3	ZPR1, APOA1, APOA4, APOA5, APOC3	rs964184-C	0.86	2E-26		0.28	[0.23-0.33] unit decrease	Illumina [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11q23.3	NR	rs964184-G	0.133391	2E-316		0.106826	[0.1-0.11] unit increase	Affymetrix [15000001]	N
1474	chr11	116648916	116648917	rs964184	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q23.3		rs964184-?	NR	4E-42		0.0406845	[0.035-0.047] unit decrease	NR [6912294] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q23.3		rs964184-G	0.131624	2E-50		0.043	[0.037-0.049] unit decrease	NR [7250403] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-G	0.133588	2E-78		0.0574978	[0.051-0.064] unit increase	Affymetrix [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-G	0.133633	1E-311		0.105482	[0.1-0.11] unit decrease	Affymetrix [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-G	0.133227	9E-138		0.0764264	[0.07-0.082] unit increase	Affymetrix [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q23.3	ZNF259	rs964184-?	NR	2E-163		0.1027	[0.096-0.109] unit increase	Affymetrix [5701386] (imputed)	N
1474	chr11	116648916	116648917	rs964184	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.863547	5E-44		0.03977	[0.034-0.045] unit increase	Affymetrix [16668957] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs964184-?	NR	9E-181		0.06943	[0.064-0.075] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs964184-?	NR	2E-139		0.06159	[0.057-0.067] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11q23.3	ZPR1	rs964184-?	NR	1E-64		0.01859	[0.016-0.021] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11q23.3	ZPR1	rs964184-?	NR	2E-55		0.01793	[0.016-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q23.3	ZPR1	rs964184-G	0.132408	7E-167		0.252628	[0.23-0.27] unit increase	Affymetrix [9463307] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:2 levels	1,937 individuals	NA	11q23.3	ZNF259	rs964184-G	0.209	8E-10		0.2465	[0.17-0.33] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triglyceride levels	2,045 European ancestry individuals	NA	11q23.3	NR	rs964184-C	NR	2E-10		0.2758	[0.19-0.36] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	5E-8	(TAG(56:4;0))	0.252	[0.16-0.34] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	5E-8	(TAG(50:3;0))	0.2477	[0.16-0.34] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	3E-8	(TAG(51:3;0))	0.2579	[0.17-0.35] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	2E-8	(Total_TAG)	0.248	[0.16-0.33] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	2E-8	(TAG(54:3;0))	0.249	[0.16-0.34] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	2E-8	(TAG(52:4;0))	0.2515	[0.16-0.34] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	NR	1E-8	(TAG(52:3;0))	0.2578	[0.17-0.35] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA1-C3-A4-A5	rs964184-C	0.1451	4E-7	(TAG(50:2;0))	0.2299	[0.14-0.32] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Diacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA1-C3-A4-A5	rs964184-C	0.1452	2E-7	(DAG(18:1;0-18:2;0))	0.231	[0.14-0.32] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Diacylglyceride levels	2,045 European ancestry individuals	NA	11q23.3	APOA1-C3-A4-A5	rs964184-C	0.1448	6E-7	(DAG(18:1;0-18:1;0))	0.2257	[0.14-0.31] unit decrease	Illumina [~ 9300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs964184-?	NR	2E-101		0.1016324	[0.092-0.111] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs964184-?	NR	9E-17		3.360398	[2.57-4.15] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs964184-?	NR	2E-19		1.170037	[0.91-1.43] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	11q23.3	ZNF259	rs964184-G	0.13389	5E-8		0.06326195	[0.041-0.086] unit increase	Affymetrix [7288503] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	11q23.3	ZNF259	rs964184-G	0.132603	1E-11		0.06719475	[0.048-0.087] unit increase	Affymetrix [7288503] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	11q23.3	ZNF259	rs964184-G	0.131318	2E-12		0.06259394	[0.045-0.08] unit increase	Affymetrix [7288503] (imputed)	N
1474	chr11	116648916	116648917	rs964184	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	11q23.3	ZNF259	rs964184-G	0.133698	4E-85		0.16071872	[0.14-0.18] unit increase	Affymetrix [7288503] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q23.3		rs964184-C	0.8305	2E-138		0.0763	[0.07-0.082] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	11q23.3		rs964184-C	0.8641	1E-15	(EA)	2.0848	[1.58-2.59] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	11q23.3		rs964184-C	0.8289	6E-49		0.0209	[0.018-0.024] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	11q23.3	ZNF259	rs964184-C	0.21	8E-30	(Indian)	18.69	[15.46-21.92] unit increase	Illumina [551825]	N
1474	chr11	116648916	116648917	rs964184	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	11q23.3	ZNF259	rs964184-?	NR	7E-7	(Indian)			Illumina [551825]	N
1474	chr11	116648916	116648917	rs964184	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	11q23.3	NR	rs964184-C	0.8418	1E-500				Affymetrix, Illumina [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q23.3		rs964184-?	NR	3E-44				NR [~ 8900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q23.3		rs964184-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q23.3		rs964184-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (ABCA-1 dependent assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	11q23.3	APOA1/C3/A4/A5	rs964184-G	0.857	7E-13		0.2019	[0.15-0.26] unit increase	Illumina [at least 9000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.8775	8E-9	(ANGPTL3, 10391_1_3)	0.2139115	[0.14-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.8775	8E-24	(APOA5, 11318_20_3)	0.3712649	[0.3-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.8775	3E-13	(PCSK7, 4459_68_2)	0.2718272	[0.2-0.34] unit increase	Illumina [> 1000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs964184-C	0.8775	2E-13	(NXPH2, 9511_61_3)	0.27592963	[0.2-0.35] unit increase	Illumina [> 1000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	APOC3	rs964184-C	0.8775	3E-7	(APOC3, 6461_54_3)	0.19363518	[0.12-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	APOA5	rs964184-C	0.869	5E-13	(Apolipoprotein A-V, APOA5.11318.20.3)	0.26	[0.18-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	NR	1E-300		0.25	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.234	9E-60	(East Asian)	0.274	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.231	6E-67	(Hispanic)	0.275	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.225	2E-7	(South Asian)	0.339	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.14	1E-300	(EA)	0.251	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	NR	9E-71		0.102	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.231	5E-12	(Hispanic)	0.121	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.14	1E-56	(EA)	0.105	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	NR	1E-10		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.14	1E-9	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	NR	9E-95		0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.234	5E-22	(East Asian)	0.15	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.231	6E-11	(Hispanic)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs964184-G	0.14	2E-68	(EA)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Triglyceride levels	1,017 Yoruban ancestry individuals, 1,765 Filipino individuals	188,577 European and other ancestry individuals	11q23.3	ZNF259	rs964184-?	NR	3E-13	(Filipino)			Illumina [4454201] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q23.3	BUD13, ZPR1	rs964184-C	0.8608	8E-15		0.0705	[0.053-0.088] unit decrease	NR [8041861] (imputed)	N
1474	chr11	116648916	116648917	rs964184	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q23.3	BUD13, ZPR1	rs964184-C	0.861	8E-15		0.071	[0.053-0.089] unit decrease	Affymetrix [7947838] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	11q23.3	ZNF259, APOA5, APOA1	rs964184-G	0.163	5E-6		1.05	[1.03-1.08]	Affymetrix [9149595] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Very low density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	APOA1	rs964184-G	0.163	4E-12		0.242	[0.17-0.31] unit increase	Illumina [at least 13541454] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Triglyceride levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	APOA1	rs964184-G	0.163	2E-11		0.236	[0.17-0.30] unit increase	Illumina [at least 13541454] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-C	0.778	4E-6	(Asian initial, BMI unadjusted)	0.0449	[0.026-0.064] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-C	0.0	2E-55	(Trans-ethnic initial)	0.121	[0.11-0.14] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	11q23.3	APOA4, APOA5, APOA1, APOC3	rs964184-C	0.0	3E-18	(Trans-ethnic initial)	0.0855	[0.07-0.101] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	5E-13		0.03808436	[0.028-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	2E-13		0.03873643	[0.028-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	4E-11		0.03438338	[0.024-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8668	4E-47		0.07616955	[0.066-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8668	4E-11		0.03519076	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	6E-13		0.03660462	[0.027-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	3E-11		0.03503236	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.8665	8E-12		0.03599952	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q23.3	NR	rs964184-?	NR	2E-108				Affymetrix [NR]	N
1474	chr11	116648916	116648917	rs964184	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q23.3	NR	rs964184-?	NR	3E-116				Affymetrix [NR]	N
1474	chr11	116648916	116648917	rs964184	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.86	8E-66	(Triglycerides in small VLDL)	0.24	[0.22-0.26] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1474	chr11	116648916	116648917	rs964184	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Triglycerides	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	11q23.3	ZNF259, APOA5	rs964184-G	0.248	3E-83	(Hispanic)	0.275	[0.25-0.3] unit increase	Affymetrix [at least 370268] (imputed)	N
1474	chr11	116648916	116648917	rs964184	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	11q23.3	ZNF259, APOA5	rs964184-G	0.248	5E-13	(Hispanic)	0.103	[0.076-0.13] unit increase	Affymetrix [at least 370268] (imputed)	N
1474	chr11	116648916	116648917	rs964184	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	11q23.3	APOA1	rs964184-C	0.784	3E-50		0.229	[0.2-0.26] unit decrease	Illumina [286795]	N
1474	chr11	116648916	116648917	rs964184	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	11q23.3	ZPR1	rs964184-C	0.833	1E-9	(AUC)	0.3023	[0.2-0.4] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Triglycerides	3,681 individuals	NA	11q23.3	ZNF259, APOA5	rs964184-C	0.137	2E-11		0.091	[0.064-0.118] unit increase	Illumina [101597]	N
1474	chr11	116648916	116648917	rs964184	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	11q23.3	APO-cluster	rs964184-G	0.13	2E-157		0.244	[0.23-0.26] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1474	chr11	116648916	116648917	rs964184	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	11q23.3	APO-cluster	rs964184-G	0.13	4E-18		0.08	[0.062-0.098] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1474	chr11	116648916	116648917	rs964184	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	11q23.3	APO-cluster	rs964184-C	0.87	1E-28		0.102	[0.084-0.12] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1474	chr11	116648916	116648917	rs964184	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	11q23.3	APO-cluster	rs964184-G	0.13	4E-39		0.118	[0.1-0.14] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1474	chr11	116648916	116648917	rs964184	25411281	Dashti HS	2014-10-08	Am J Clin Nutr	Meta-analysis of genome-wide association studies for circulating phylloquinone concentrations.	Circulating phylloquinone levels	2,138 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-G	0.15	6E-8	(Model 1)	0.23	[0.15-0.31] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
1474	chr11	116648916	116648917	rs964184	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	NR	5E-6		4.581	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	11q23.3	ZNF259, BUD13	rs964184-G	NR	6E-33		1.89	[1.69-2.08]	Illumina [1661241] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-C	0.86	8E-15	(X-03094)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	11q23.3	ZNF259	rs964184-?		9E-10				Affymetrix, Illumina [up to 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	APOA1	rs964184-C	0.84	7E-224		0.234	[NR] mg/dL decrease	NR [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	APOA1	rs964184-C	0.84	2E-26		0.086	[NR] unit decrease	NR [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	APOA1	rs964184-C	0.84	6E-48		0.106	[NR] unit increase	NR [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	APOA1	rs964184-C	0.84	3E-55		0.121	[NR] unit decrease	NR [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	9E-8	(TAG 50:4)	0.25804794	[0.16-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	8E-9	(DAG 36:1)	0.2795505	[0.18-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	8E-8	(TAG 54:9)	0.26271346	[0.17-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	7E-9	(TAG 52:5)	0.27741998	[0.18-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	7E-7	(TAG 54:6)	0.23600607	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	7E-7	(DAG 34:1)	0.23898786	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	7E-6	(TAG 54:1)	0.23262957	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	6E-9	(DAG 34:2)	0.2806149	[0.19-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	6E-7	(TAG 56:2)	0.2569712	[0.16-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	6E-7	(TAG 52:2)	0.2418854	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	5E-8	(TAG 54:5)	0.25984198	[0.17-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	5E-7	(TAG 54:4)	0.24132471	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	4E-7	(CE 20:3)	0.24353795	[0.15-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	3E-9	(TAG 54:3)	0.28557473	[0.19-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	3E-7	(TAG 56:9)	0.24669956	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	3E-11	(TAG 56:3)	0.32237417	[0.23-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	2E-10	(TAG 54:2)	0.3063211	[0.21-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	2E-10	(TAG 52:4)	0.30378243	[0.21-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	1E-6	(TAG 54:8)	0.23459147	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	1E-11	(DAG 36:2)	0.3290025	[0.23-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	BUD13	rs964184-?	NR	1E-10	(TAG 56:10)	0.3116408	[0.22-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	11q23.3	APOC, APOA	rs964184-G	0.248	4E-33	(Hispanic)	0.1567	[NR] unit increase	Affymetrix [NR]	N
1474	chr11	116648916	116648917	rs964184	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	11q23.3	APOC, APOA	rs964184-G	0.248	3E-12	(Hispanic)	0.0459	[NR] unit decrease	Affymetrix [NR]	N
1474	chr11	116648916	116648917	rs964184	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Vitamin levels	up to 1,200 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-?	NR	7E-9	(Vitamin E alpha tocopherol)			Illumina [up to 10879115] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	11q23.3	ZNF259	rs964184-?	NR	1E-8	(Triglycerides)			Illumina [up to 10879115] (imputed)	N
1474	chr11	116648916	116648917	rs964184	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13, KIAA0999	rs964184-?	0.30	5E-35		1.77	[1.67-1.87]	Illumina [1361436] (imputed)	N
1474	chr11	116648916	116648917	rs964184	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-?	0.14	8E-20				Illumina [~ 2000000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	11q23.3	ZNF259, LOC100128347, APOA5, SIK3, BUD13	rs964184-G	0.15	3E-12	(alpha-TOH)	0.07	[0.050-0.090] mg/L increase	Illumina [549989]	N
1474	chr11	116648916	116648917	rs964184	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	11q23.3	ZNF259, BUD13	rs964184-G	0.15	4E-7	(change in alpha-TOH)	0.88	[0.55-1.21] unit increase	Illumina [549989]	N
1474	chr11	116648916	116648917	rs964184	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	11q23.3	ZNF259	rs964184-G	0.15	3E-31	(TG)	0.23	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
1474	chr11	116648916	116648917	rs964184	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	11q23.3	APOA5	rs964184-?	NR	2E-10	(proportions)	1.0	[NR] % increase	Illumina [NR] (imputed)	N
1474	chr11	116648916	116648917	rs964184	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	11q23.3	ZNF259	rs964184-C	0.86	8E-11	(Activity concentrations)	0.032	[0.022-0.042] unit decrease	Affymetrix, Illumina [2661766] (imputed)	N
1474	chr11	116648916	116648917	rs964184	21729881	Major JM	2011-07-05	Hum Mol Genet	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 cases, 1,359 controls	11q23.3	ZNF259, APOA5, BUD13	rs964184-G	0.15	8E-12		0.04	[0.02-0.06] unit increase	Illumina [NR]	N
1474	chr11	116648916	116648917	rs964184	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5	rs964184-G	0.13	1E-17		1.13	[1.10-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5	rs964184-G	0.12	2E-11		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.13	7E-240		16.95	[16.01-17.89] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.13	1E-26		2.85	[2.32-3.38] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.13	5E-47		1.5	[1.28-1.72] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.13	6E-57		4.68	[4.11-5.25] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	20657596	Johansen CT	2010-07-25	Nat Genet	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	11q23.3	APOA5	rs964184-G	0.14	5E-24		3.28	[2.61-4.14]	Affymetrix [~ 2100000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.14	4E-62		0.3	[0.24-0.36] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1474	chr11	116648916	116648917	rs964184	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs964184-G	0.14	1E-12		0.17	[0.11-0.23] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	5E-11		0.155199	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	8E-11		0.149427	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	3E-10		0.151466	[0.1-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	7E-11		0.151341	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	6E-11		0.150927	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs11823543-A	NR	1E-10		0.113384	[0.079-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116649134	116649135	rs11823543	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	ZNF259	rs11823543-A	NR	3E-9		0.35	[0.23-0.47] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116649805	116649806	rs75198898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	11q23.3		rs75198898-A	0.077336	6E-184		0.258801	[0.24-0.28] unit decrease	Illumina [13465896] (imputed)	N
1474	chr11	116649805	116649806	rs75198898	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	NR	rs75198898-?	NR	2E-288		0.2927	[0.28-0.31] unit increase novel	Illumina [6108953] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992146	3E-19		0.21053	[0.16-0.26] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	4E-9		0.12895	[0.086-0.172] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992184	6E-11		0.153261	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	4E-44		0.320918	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	1E-9		0.142787	[0.097-0.189] unit decrease	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	3E-8		0.120511	[0.078-0.163] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	9E-22		0.23109	[0.18-0.28] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992146	5E-13		0.169544	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	3E-10		0.14285	[0.098-0.187] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992146	4E-35		0.286698	[0.24-0.33] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992189	3E-17		0.196376	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	8E-40		0.30518	[0.26-0.35] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	1E-16		0.180227	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992146	2E-31		0.270306	[0.22-0.32] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	8E-9		0.14042	[0.093-0.188] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992189	4E-9		0.139518	[0.093-0.186] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs139636218-T	0.992186	3E-15		0.173308	[0.13-0.22] unit increase	NR [11722792] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q23.3	ZNF259	rs139636218-C	0.00772899999999999	2E-19		0.12075179	[0.095-0.147] unit increase	Affymetrix [93095623] (imputed)	N
1474	chr11	116650294	116650295	rs139636218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.3	ZNF259	rs139636218-C	0.00771599999999995	1E-9		0.08114537	[0.055-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
1474	chr11	116650637	116650638	rs113932726	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	11q23.3	ZPR1	rs113932726-?	NR	2E-8		0.05462	[0.036-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	11q23.3		rs11604424-T	0.791587587	6E-22		0.243585	[0.19-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglyceroloxid(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	6E-29		0.085	[0.07-0.1] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	7E-29		0.1355	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	4E-29		0.0688	[0.057-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	2E-29		0.0742	[0.061-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	7E-29		0.0855	[0.07-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	7E-29		0.0858	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	5E-29		0.086	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	4E-29		0.0862	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	4E-29		0.1562	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	2E-29		0.1351	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	7E-29		0.0855	[0.07-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	7E-29		0.0855	[0.07-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	6E-29		0.1192	[0.098-0.14] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	3E-29		0.1866	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	4E-29		0.1489	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.0893	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	5E-29		0.079	[0.065-0.093] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	6E-29		0.0771	[0.064-0.091] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.0803	[0.066-0.094] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	4E-29		0.1258	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	7E-29		0.0699	[0.058-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	6E-29		0.0866	[0.071-0.102] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	2E-29		0.0898	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	2E-29		0.0892	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	7E-29		0.0695	[0.057-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	2E-29		0.1243	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.0722	[0.06-0.085] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	3E-29		0.0797	[0.066-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	3E-29		0.0863	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	6E-29		0.0839	[0.069-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	6E-29		0.0856	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	5E-29		0.1462	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	5E-29		0.0856	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	2E-29		0.0686	[0.057-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	4E-29		0.0861	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	5E-29		0.0688	[0.057-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	5E-29		0.1029	[0.085-0.121] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	5E-29		0.1023	[0.084-0.12] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	7E-29		0.0686	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	3E-29		0.0863	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.08	[0.066-0.094] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	2E-29		0.0686	[0.057-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-A	NR	2E-29		0.1874	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	2E-29		0.1241	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	4E-29		0.0695	[0.057-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	4E-29		0.0745	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-G	NR	3E-29		0.0805	[0.066-0.095] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(14:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-C	NR	7E-29		0.0686	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11604424-T	NR	1E-29		0.0895	[0.074-0.105] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs11604424-?	NR	2E-63		0.0715399	[0.063-0.08] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs11604424-?	NR	2E-13		2.675948	[1.96-3.39] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	NR	1E-300		0.17	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.392	3E-43	(East Asian)	0.201	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.355	1E-39	(Hispanic)	0.185	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.215	3E-250	(EA)	0.169	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	NR	1E-47		0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.355	1E-7	(Hispanic)	0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.215	2E-39	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	NR	1E-43		0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.392	4E-15	(East Asian)	0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651114	116651115	rs11604424	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11604424-C	0.215	6E-33	(EA)	0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116651462	116651463	rs1942478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1942478-C	NR	1E-13		0.1017	[0.075-0.129] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651462	116651463	rs1942478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1942478-T	NR	1E-13		0.0815	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651462	116651463	rs1942478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1942478-C	NR	1E-13		0.0589	[0.043-0.074] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116651462	116651463	rs1942478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1942478-A	NR	1E-13		0.1081	[0.079-0.137] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116651462	116651463	rs1942478	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs1942478-C	NR	1E-13		0.093	[0.069-0.117] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12286037-T	NR	2E-10		0.151675	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12286037-T	NR	2E-10		0.146818	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12286037-T	NR	4E-10		0.146535	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs12286037-T	NR	3E-10		0.146158	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs12286037-?	NR	1E-27		0.06336656	[0.052-0.075] unit increase	Illumina [31978265] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs12286037-?	NR	3E-6		2.370317	[1.37-3.37] unit increase	Illumina [32003504] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs12286037-?	NR	1E-7		0.8584018	[0.54-1.17] unit decrease	Illumina [31978362] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	11q23.3	ZNF259	rs12286037-C	NR	1E-8	(TG-GLUC)	0.32	[0.20-0.44] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116652206	116652207	rs12286037	20442857	Suchindran S	2010-04-29	PLoS Genet	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	11q23.3	ZNF259	rs12286037-T	0.07	4E-8	(activity)	6.4	[NR] nmol/ml/min increase	Affymetrix [360811]	N
1474	chr11	116652206	116652207	rs12286037	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	11q23.3	APOC3, APOA4, APOA5, APOA1	rs12286037-T	0.06	1E-26		25.82	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-G	NR	1E-11		0.0942	[0.067-0.121] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-C	NR	1E-11		0.0843	[0.06-0.109] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-T	NR	1E-11		0.0559	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-T	NR	1E-11		0.0584	[0.042-0.075] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-C	NR	1E-11		0.0594	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652300	116652301	rs4417316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4417316-T	NR	1E-11		0.0401	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652350	116652351	rs12274192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q23.3	ZNF259	rs12274192-G	0.0665	8E-10		0.04391652	[0.03-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116652350	116652351	rs12274192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q23.3	ZNF259	rs12274192-G	0.0665	3E-10		0.04477362	[0.031-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116652350	116652351	rs12274192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q23.3	ZNF259	rs12274192-G	0.0665	2E-10		0.04547737	[0.031-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	2,253 Korean ancestry cases and controls	NA	11q23.3	NR	rs6589566-?	NR	1E-14		1.482	[1.341-1.637]	Affymetrix [at least 584061] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	11q23.3	NR	rs6589566-?	NR	1E-14		1.482	[1.341-1.637]	Affymetrix [at least 584061] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	11q23.3	ZPR1	rs6589566-C	0.2169	8E-38	(TG)	0.1113	NR unit increase	Affymetrix [305158]	N
1474	chr11	116652422	116652423	rs6589566	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs6589566-?	NR	3E-75		0.1286976	[0.11-0.14] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs6589566-?	NR	6E-12		3.927896	[2.81-5.05] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs6589566-?	NR	2E-11		1.250607	[0.88-1.62] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116652422	116652423	rs6589566	28046027	Kim T	2017-01-03	PLoS One	Genome-Wide Association Study Reveals Four Loci for Lipid Ratios in the Korean Population and the Constitutional Subgroup.	Triglyceride to HDL cholesterol ratio	5,292 Korean ancestry individuals	2,567 Korean ancestry individuals	11q23.3	APOA5	rs6589566-?	NR	2E-13		0.002078	[0.0015-0.0026] unit increase	Affymetrix [310746]	N
1474	chr11	116652422	116652423	rs6589566	28046027	Kim T	2017-01-03	PLoS One	Genome-Wide Association Study Reveals Four Loci for Lipid Ratios in the Korean Population and the Constitutional Subgroup.	NHDL cholesterol to HDL cholesterol ratio	5,292 Korean ancestry individuals	2,567 Korean ancestry individuals	11q23.3	APOA5	rs6589566-?	NR	1E-8		0.1409	[0.092-0.189] unit increase	Affymetrix [310746]	N
1474	chr11	116652422	116652423	rs6589566	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	11q23.3	APOC, APOA	rs6589566-C	0.0176	5E-14	(AA)	0.2066	[NR] unit increase	Affymetrix [NR]	N
1474	chr11	116652422	116652423	rs6589566	18179892	Wallace C	2008-01-10	Am J Hum Genet	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families, 1,461 European ancestry twins	11q23.3	APOA1, APOC3, APOA5	rs6589566-G	0.06	3E-11				Affymetrix [400496]	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0477	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.1054	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.1044	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0478	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0322	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0642	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0377	[0.026-0.049] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0516	[0.036-0.068] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0661	[0.046-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0637	[0.044-0.083] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0557	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0435	[0.03-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.066	[0.045-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.1044	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0382	[0.026-0.05] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.1043	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0354	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0317	[0.022-0.041] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.1044	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0716	[0.049-0.094] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0624	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0559	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0559	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0424	[0.029-0.056] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.1475	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0511	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.062	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0285	[0.02-0.037] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0354	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.1048	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.046	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0643	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.083	[0.057-0.109] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.1044	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-C	NR	3E-10		0.0641	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0511	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0482	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0322	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.1042	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.1042	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0704	[0.048-0.092] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0827	[0.057-0.108] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0661	[0.046-0.087] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.05	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0641	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-T	NR	3E-10		0.0689	[0.048-0.09] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-G	NR	3E-10		0.0524	[0.036-0.069] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs7483863-A	NR	3E-10		0.0478	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116652490	116652491	rs7483863	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	11q23.3	NR	rs7483863-?	NR	8E-36		0.07245	[0.061-0.084] unit decrease novel	Illumina [6108953] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-10		0.185999	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	6E-13		0.209493	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-10		0.18509	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	8E-11		0.192433	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-13		0.216073	[0.16-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-11		0.198005	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-12		0.199987	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-10		0.185044	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-10		0.187947	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	3E-10		0.184307	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0765	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.1272	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1272	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0582	[0.043-0.074] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0674	[0.049-0.085] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0785	[0.058-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0535	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0598	[0.044-0.076] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0511	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0535	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1271	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.1273	[0.093-0.161] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0554	[0.041-0.07] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0997	[0.073-0.126] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0857	[0.063-0.109] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0475	[0.035-0.06] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0574	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0568	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	7E-13		0.203796	[0.15-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-10		0.183815	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	3E-16		0.190364	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-12		0.165592	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-10		0.145591	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	5E-17		0.199339	[0.15-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-16		0.189298	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-10		0.144554	[0.099-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0436	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0405	[0.03-0.051] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0451	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0447	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0523	[0.038-0.066] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0777	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.051	[0.037-0.065] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.07	[0.051-0.089] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.1293	[0.095-0.164] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0691	[0.051-0.088] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0761	[0.056-0.096] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0786	[0.058-0.1] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0579	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0765	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0804	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.1646	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0773	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.1271	[0.093-0.161] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-14		0.174073	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	9E-11		0.155656	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-11		0.159191	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-14		0.184343	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-11		0.159183	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	9E-14		0.168824	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-14		0.182202	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-15		0.182686	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0573	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0771	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0566	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0764	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-13		0.171758	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0478	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0765	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-10		0.106783	[0.073-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-16		0.187004	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-10		0.137164	[0.095-0.179] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	3E-15		0.167288	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	5E-16		0.169279	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	6E-16		0.167915	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	4E-14		0.160062	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	5E-11		0.147694	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-10		0.145791	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1266	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0892	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0816	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0786	[0.058-0.1] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0772	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.1907	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0765	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0656	[0.048-0.083] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.0801	[0.059-0.101] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.1687	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0568	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0576	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-10		0.12969	[0.09-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0805	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1191	[0.087-0.151] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0785	[0.058-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.1272	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1278	[0.094-0.162] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.0446	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-T	NR	2E-13		0.0607	[0.044-0.077] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-A	NR	2E-13		0.078	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-G	NR	2E-13		0.1271	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2075290-C	NR	2E-13		0.0615	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2075290-C	NR	1E-12		0.12476	[0.09-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs2075290-?	NR	4E-70		0.1120566	[0.1-0.124] unit decrease	Illumina [31978265] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs2075290-?	NR	2E-11		3.545291	[2.51-4.58] unit decrease	Illumina [32003504] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs2075290-?	NR	1E-13		1.280678	[0.94-1.62] unit increase	Illumina [31978362] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	NR	6E-284		0.239	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.237	9E-55	(East Asian)	0.265	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.187	3E-6	(South Asian)	0.332	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.122	1E-40	(Hispanic)	0.278	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.074	3E-190	(EA)	0.231	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	NR	4E-40		0.098	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.074	7E-32	(EA)	0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	NR	4E-7		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.074	3E-7	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	NR	7E-61		0.099	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.237	7E-20	(East Asian)	0.144	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.122	2E-11	(Hispanic)	0.127	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075290-C	0.074	1E-34	(EA)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	ZNF259	rs2075290-C	NR	1E-16		0.41	[0.31-0.51] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	ZNF259	rs2075290-C	NR	2E-9		0.26	[0.18-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1474	chr11	116653295	116653296	rs2075290	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	11q23.3	ZNF259	rs2075290-C	NR	2E-14		0.39	[0.29-0.49] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116654434	116654435	rs603446	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs603446-?	NR	9E-15		0.0365082	[0.027-0.046] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116654434	116654435	rs603446	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q23.3		rs603446-T	0.3889	6E-19		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1475	chr11	116654434	116654435	rs603446	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	ZNF259	rs603446-?		2E-14				Affymetrix [at least 805769] (imputed)	N
1475	chr11	116654434	116654435	rs603446	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	11q23.3	ZNF259, APOA1, APOC3, APOA4, APOA5, BUD13	rs603446-T	0.23	2E-86		0.0876	[0.079-0.096] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	9E-12		0.164574	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	5E-11		0.154773	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	2E-11		0.164393	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	5E-12		0.164069	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	2E-10		0.154093	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	5E-12		0.163516	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs35120633-A	NR	3E-11		0.119892	[0.085-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	11q23.3		rs35120633-A	0.0665	2E-68		0.0915	[0.081-0.102] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1475	chr11	116655599	116655600	rs35120633	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	11q23.3	ZNF259	rs35120633-?	0.0296	3E-12	(AA)	0.13	unit increase	Illumina [247644]	N
1475	chr11	116655858	116655859	rs140390701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs140390701-T	NR	6E-10		0.1057	[0.072-0.139] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	4E-35		0.1376	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	7E-36		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	4E-36		0.115	[0.097-0.133] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	3E-35		0.1251	[0.11-0.14] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	7E-36		0.1542	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	9E-35		0.1401	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	1E-35		0.0815	[0.069-0.094] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	3E-36		0.1151	[0.097-0.133] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	8E-36		0.1756	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	7E-36		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	6E-35		0.174	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	2E-35		0.1001	[0.084-0.116] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	4E-35		0.0802	[0.067-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	3E-35		0.0858	[0.072-0.099] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	8E-35		0.0923	[0.078-0.107] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	6E-35		0.1396	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	8E-36		0.1538	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	8E-36		0.1054	[0.089-0.122] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	7E-36		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	5E-35		0.0926	[0.078-0.107] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	6E-35		0.1209	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	5E-36		0.135	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	1E-35		0.0434	[0.037-0.05] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	8E-35		0.0925	[0.078-0.107] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	3E-35		0.0803	[0.068-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	8E-35		0.1381	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	3E-36		0.0903	[0.076-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	9E-35		0.1404	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	5E-36		0.1419	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	4E-35		0.1417	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	9E-35		0.08	[0.067-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	3E-36		0.1462	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	9E-35		0.08	[0.067-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	3E-36		0.0925	[0.078-0.107] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	9E-36		0.0852	[0.072-0.099] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	7E-36		0.1529	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	8E-35		0.0882	[0.074-0.102] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	9E-35		0.08	[0.067-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	5E-35		0.0901	[0.076-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	6E-35		0.1504	[0.13-0.17] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	1E-35		0.1406	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	5E-35		0.1425	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	5E-35		0.141	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	3E-35		0.0803	[0.068-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	7E-36		0.085	[0.072-0.098] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	1E-35		0.0649	[0.055-0.075] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	3E-36		0.1537	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	4E-35		0.1372	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	3E-35		0.0803	[0.068-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	7E-36		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	3E-35		0.0803	[0.068-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	6E-35		0.0776	[0.065-0.09] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	5E-35		0.0805	[0.068-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	2E-35		0.0805	[0.068-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	1E-35		0.1525	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	7E-36		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	2E-35		0.195	[0.16-0.23] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	5E-36		0.1534	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-T	NR	4E-36		0.115	[0.097-0.133] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-C	NR	4E-35		0.0802	[0.067-0.093] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	2E-35		0.0769	[0.065-0.089] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-A	NR	1E-35		0.1088	[0.092-0.126] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116656787	116656788	rs10750096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs10750096-G	NR	4E-36		0.1464	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs3741298-C	0.190277	3E-32		0.0591648	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	11q23.3		rs3741298-T	0.805731539	5E-10		0.170318	[0.12-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	11q23.3		rs3741298-T	0.805685688	1E-11		0.184572	[0.13-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	11q23.3		rs3741298-T	0.805661224	2E-9		0.164432	[0.11-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	11q23.3		rs3741298-T	0.805731539	9E-9		0.157192	[0.1-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial polyunsaturated fatty acids	4,348 individuals	NA	11q23.3		rs3741298-T	0.805429305	5E-12		0.189736	[0.14-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-6 fatty acids	4,348 individuals	NA	11q23.3		rs3741298-T	0.805429305	2E-12		0.193098	[0.14-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	11q23.3		rs3741298-T	0.805429305	3E-16		0.223938	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small VLDL	4,348 individuals	NA	11q23.3		rs3741298-T	0.805661224	5E-12		0.188481	[0.14-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	11q23.3		rs3741298-T	0.804933432	2E-12		0.183168	[0.13-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium LDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804994716	3E-8		0.145028	[0.094-0.196] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804907055	5E-9		0.152733	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804907055	1E-10		0.167684	[0.12-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total phosphoglycerides	4,734 individuals	NA	11q23.3		rs3741298-T	0.804936508	5E-9		0.152478	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804933432	3E-11		0.173412	[0.12-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting polyunsaturated fatty acids	4,734 individuals	NA	11q23.3		rs3741298-T	0.804773353	9E-18		0.223803	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804933432	4E-8		0.143596	[0.093-0.195] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small LDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.805017974	4E-9		0.153296	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium LDL	4,734 individuals	NA	11q23.3		rs3741298-T	0.804994716	4E-9		0.153252	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-6 fatty acids	4,734 individuals	NA	11q23.3		rs3741298-T	0.804897333	2E-18		0.228584	[0.18-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglyceroloxid(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0959	[0.069-0.123] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0772	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.1885	[0.14-0.24] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0747	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0409	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0494	[0.035-0.063] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0859	[0.062-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0662	[0.048-0.085] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0664	[0.048-0.085] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0792	[0.057-0.102] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0806	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.077	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0772	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	5E-12		0.041	[0.029-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0747	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0582	[0.042-0.075] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0772	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.1109	[0.08-0.142] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0411	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0599	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0856	[0.061-0.11] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0639	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0409	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0772	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0414	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0409	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0738	[0.053-0.095] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0964	[0.069-0.124] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0966	[0.069-0.124] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0421	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0411	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	5E-12		0.067	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0288	[0.021-0.037] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	5E-12		0.0778	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0894	[0.064-0.115] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0773	[0.056-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0752	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0519	[0.037-0.067] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0752	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0361	[0.026-0.046] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0762	[0.055-0.098] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0411	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.1478	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0804	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0361	[0.026-0.046] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	5E-12		0.0637	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0464	[0.033-0.06] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0415	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.1081	[0.078-0.139] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.1016	[0.073-0.13] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0861	[0.062-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.0562	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0779	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-G	NR	4E-12		0.1077	[0.077-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-A	NR	4E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0746	[0.053-0.096] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	4E-12		0.0747	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(14:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-T	NR	5E-12		0.041	[0.029-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs3741298-C	NR	4E-12		0.0775	[0.056-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs3741298-?	NR	1E-77		0.07792502	[0.07-0.086] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs3741298-?	NR	2E-15		2.861736	[2.16-3.57] unit decrease	Illumina [32003504] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	NR	1E-300		0.177	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.399	4E-42	(East Asian)	0.197	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.35	1E-41	(Hispanic)	0.188	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.203	5E-268	(EA)	0.179	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	NR	1E-49		0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.35	2E-8	(Hispanic)	0.086	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.203	5E-41	(EA)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	NR	3E-46		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.399	5E-15	(East Asian)	0.105	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3741298-C	0.203	2E-35	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116657560	116657561	rs3741298	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	ZNF259, APOA5	rs3741298-G	0.48	3E-8	(TG )	0.04	[NR] mg/dL increase	Illumina [899892]	N
1475	chr11	116657666	116657667	rs3741297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	11q23.3		rs3741297-T	0.075599	4E-10		0.0576844	[0.04-0.076] unit decrease	Illumina [13461863] (imputed)	N
1475	chr11	116657666	116657667	rs3741297	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	11q23.3	ZPR1	rs3741297-?	NR	3E-157		0.2579	[0.24-0.28] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116658030	116658031	rs12285095	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	APOA5	rs12285095-?	NR	9E-8	(CE 18:3)	0.3580416	[0.23-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1475	chr11	116660007	116660008	rs142958146	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	APOA5	rs142958146-A	0.992816	1E-10		0.0769705	[0.054-0.1] unit increase	Affymetrix [NR] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	7E-12		0.200372	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-10		0.187823	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	1E-12		0.208912	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	1E-10		0.189526	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_51:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	7E-11		0.189458	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-10		0.18439	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.077	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0562	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0432	[0.032-0.055] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0436	[0.032-0.055] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0865	[0.063-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.06	[0.044-0.076] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0947	[0.069-0.12] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0244	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.753	[0.55-0.96] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0376	[0.027-0.048] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0245	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0652	[0.048-0.083] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.0463	[0.034-0.059] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0245	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.0765	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0568	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0584	[0.043-0.074] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0887	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0629	[0.046-0.08] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-12		0.200391	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-10		0.149704	[0.1-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-16		0.19257	[0.15-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	8E-13		0.168637	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	5E-11		0.150434	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-16		0.197353	[0.15-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	5E-16		0.188152	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-10		0.144896	[0.099-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0852	[0.062-0.108] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	3E-13		0.0623	[0.045-0.079] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0803	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.1519	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0406	[0.03-0.052] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	3E-13		0.1903	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0383	[0.028-0.049] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0755	[0.055-0.096] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0727	[0.053-0.092] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0708	[0.052-0.09] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0477	[0.035-0.06] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	4E-13		0.1901	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0443	[0.032-0.056] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.061	[0.045-0.077] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.0244	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.1749	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	4E-13		0.1437	[0.1-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.1654	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0787	[0.058-0.1] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	7E-13		0.166237	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:4_[M+H]1+/Phosphatidylcholine-P_36:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-10		0.154072	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-11		0.159094	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-14		0.182947	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	8E-11		0.157513	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-13		0.167009	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	6E-15		0.185154	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	6E-15		0.180605	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0446	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0244	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.0822	[0.06-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0417	[0.031-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	5E-13		0.172164	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0447	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	4E-13		0.0851	[0.062-0.108] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-10		0.107337	[0.074-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	8E-16		0.185887	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-10		0.137755	[0.095-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	5E-15		0.166742	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-15		0.166171	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-15		0.166179	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	2E-13		0.156197	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_33:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	1E-10		0.145202	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.1012	[0.074-0.128] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0727	[0.053-0.092] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.1653	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0762	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0945	[0.069-0.12] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.1654	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0802	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.0447	[0.033-0.057] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	3E-13		0.0891	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-13		0.1519	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0381	[0.028-0.048] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	1E-10		0.132541	[0.092-0.173] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-10		0.107719	[0.074-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0512	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.0442	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.056	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	4E-13		0.0761	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0562	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-C	NR	3E-13		0.1654	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	4E-13		0.0822	[0.06-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-G	NR	3E-13		0.0614	[0.045-0.078] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-A	NR	3E-13		0.1891	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2266788-T	NR	3E-13		0.0673	[0.049-0.085] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs2266788-G	NR	4E-12		0.122507	[0.088-0.157] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	4E-12		0.0337	[0.024-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	6E-790		0.2817	[0.27-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	1E-108		0.104	[0.095-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	2E-10		0.0301	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	2E-91		0.0954	[0.086-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	3E-138		0.123	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	3E-9		0.0279	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-A	NR	5E-112		0.1061	[0.097-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	9E-18	(S_VLDL_C)	0.121263355	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	9E-11	(L_VLDL_FC)	0.08138529	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	8E-22	(S_VLDL_P)	0.118491426	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	8E-21	(M_VLDL_P)	0.108330674	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	8E-14	(XS_VLDL_P)	0.07888231	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-21	(S_VLDL_TG)	0.111770466	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-20	(L_VLDL_PL)	0.08843038	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-13	(Remnant_C)	0.10377699	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	6E-13	(M_VLDL_CE)	0.104329534	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	6E-10	(XXL_VLDL_C)	0.07614893	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	6E-10	(L_HDL_P)	0.04753021	NR unit decrease	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-22	(VLDL_TG)	0.106398575	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-16	(S_VLDL_CE)	0.10720758	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-11	(XXL_VLDL_PL)	0.06411977	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-11	(S_HDL_TG)	0.08086287	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-22	(M_VLDL_PL)	0.10969488	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-19	(XS_VLDL_TG)	0.100063704	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-19	(TotFA)	0.07781075	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-17	(L_VLDL_P)	0.08716245	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-20	(M_VLDL_TG)	0.10313128	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-16	(XL_VLDL_P)	0.074605644	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-15	(TG_PG)	0.060674686	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-14	(Ile)	0.06187486	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-13	(L_VLDL_CE)	0.09934622	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-13	(ApoB)	0.10685145	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-11	(L_VLDL_L)	0.07884635	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-10	(XXL_VLDL_CE)	0.085775085	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-21	(PUFA)	0.06285997	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-19	(S_VLDL_L)	0.111116745	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-18	(VLDL_C)	0.10481668	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-17	(XL_VLDL_TG)	0.07736129	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-17	(S_VLDL_FC)	0.116876796	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-16	(L_VLDL_TG)	0.08236133	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-15	(M_HDL_TG)	0.09595463	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-14	(M_VLDL_FC)	0.09183644	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-14	(MUFA)	0.0834144	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-13	(M_VLDL_L)	0.08598284	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-12	(VLDL_D)	0.07399029	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-12	(ApoB_ApoA1)	0.101088986	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-11	(SFA)	0.060514048	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-9	(M_LDL_PL)	0.065592244	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-9	(HDL_D)	0.05077872	NR unit decrease	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-16	(Serum_TG)	0.103411034	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-14	(M_VLDL_C)	0.105984546	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-11	(Gp)	0.0629586	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-10	(XL_VLDL_PL)	0.07621768	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	9E-14	(VLDL_C)	0.10958917	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	8E-11	(PUFA)	0.07926137	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	8E-10	(XL_VLDL_PL)	0.07716105	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-9	(TG_PG)	0.07118314	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-22	(S_VLDL_P)	0.12024026	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-13	(M_VLDL_C)	0.105209485	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-11	(S_HDL_TG)	0.08132363	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	7E-11	(M_VLDL_L)	0.095889024	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-9	(Gp)	0.07271799	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-15	(S_VLDL_C)	0.11579493	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-13	(M_VLDL_CE)	0.10591728	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	5E-10	(L_VLDL_CE)	0.09136746	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-8	(SFA)	0.06734896	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-7	(XXL_VLDL_PL)	0.063257776	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-16	(M_VLDL_P)	0.10153497	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	4E-13	(L_VLDL_PL)	0.09062238	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-8	(L_VLDL_L)	0.08157529	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-17	(M_VLDL_PL)	0.10549666	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-13	(M_HDL_TG)	0.09154559	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	3E-11	(MUFA)	0.08351751	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-9	(XL_VLDL_TG)	0.0755455	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-8	(XXL_VLDL_CE)	0.08367338	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-7	(XXL_VLDL_C)	0.07639847	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-19	(XS_VLDL_TG)	0.1132237	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-16	(S_VLDL_FC)	0.12117186	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-15	(VLDL_TG)	0.09928415	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-15	(S_VLDL_L)	0.11697446	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-12	(L_VLDL_P)	0.087747246	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	2E-11	(TotFA)	0.0830807	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-9	(XL_VLDL_P)	0.07661168	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-8	(VLDL_D)	0.07062688	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-8	(L_VLDL_FC)	0.08341533	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-6	(M_LDL_PL)	0.07212525	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-19	(S_VLDL_TG)	0.112890236	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-16	(Serum_TG)	0.103411034	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-14	(M_VLDL_TG)	0.09600778	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-13	(ApoB)	0.109229796	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-12	(S_VLDL_CE)	0.105552286	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-12	(Remnant_C)	0.10487027	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-11	(M_VLDL_FC)	0.09930646	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-11	(L_VLDL_TG)	0.08492292	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-11	(ApoB_ApoA1)	0.10006635	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs2266788-?	NR	1E-10	(XS_VLDL_P)	0.0785688	NR unit increase	Illumina [609262]	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	NR	6E-289		0.247	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.226	3E-56	(East Asian)	0.269	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.185	2E-6	(South Asian)	0.338	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.115	2E-39	(Hispanic)	0.281	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.072	5E-193	(EA)	0.237	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	NR	7E-41		0.101	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.115	9E-6	(Hispanic)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.072	5E-32	(EA)	0.105	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	NR	2E-7		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.072	2E-7	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	NR	2E-65		0.105	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.226	2E-20	(East Asian)	0.146	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.115	4E-11	(Hispanic)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2266788-G	0.072	1E-37	(EA)	0.093	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	11q23.3	APOA5	rs2266788-A	NR	2E-16		0.41	[0.31-0.51] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	11q23.3	APOA5	rs2266788-C	NR	4E-8		0.37	[0.23-0.51] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	11q23.3	APOA5	rs2266788-C	NR	2E-9		0.26	[0.18-0.34] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116660685	116660686	rs2266788	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	11q23.3	APOA5	rs2266788-C	NR	5E-13		0.39	[0.29-0.49] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116661000	116661001	rs143292359	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs143292359-?	NR	4E-18		0.429211	[0.33-0.53] unit increase	NR [9800000] (imputed)	N
1475	chr11	116661000	116661001	rs143292359	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs143292359-?	NR	6E-16		0.380879	[0.28-0.48] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116661121	116661122	rs149808404	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs149808404-?	NR	4E-25		0.959171	[0.77-1.15] unit increase	NR [9800000] (imputed)	N
1475	chr11	116661121	116661122	rs149808404	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs149808404-?	NR	6E-12		0.648948	[0.46-0.84] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116661121	116661122	rs149808404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs149808404-A	NR	4E-13		0.8253	[0.6-1.05] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11q23.3		rs2075291-A	0.075104	3E-13		0.0467799	[0.034-0.059] unit decrease	Illumina [13478928] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs2075291-?	NR	8E-16		0.381	[0.29-0.47] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	2,253 Korean ancestry cases and controls	NA	11q23.3	APOA5	rs2075291-A	0.065	4E-8		2.042	[1.583-2.633]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs2075291-?	NR	8E-16		0.1933539	[0.15-0.24] unit increase	Illumina [31978265] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs2075291-?	NR	7E-8		3.833267	[2.44-5.23] unit decrease	Illumina [31978362] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Metabolic syndrome	up to 2,857 Korean ancestry male cases and male controls	NA	11q23.3	APOA5	rs2075291-A	0.04	7E-7		2.16	[0.34-0.63]	Affymetrix [NR] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	APOA5	rs2075291-A	0.079	5E-36		0.1931	[0.16-0.22] unit increase	Affymetrix [at least 805769] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	APOA5	rs2075291-A	0.079	2E-28		0.0748	[0.062-0.088] unit decrease	Affymetrix [at least 805769] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075291-C	NR	7E-24		0.326	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075291-C	0.947	4E-24	(East Asian)	0.331	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075291-C	NR	6E-20		0.257	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs2075291-C	0.947	1E-19	(East Asian)	0.273	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	29263402	Han Y	2017-12-20	Sci Rep	Genome-wide association study identifies a missense variant at APOA5 for coronary artery disease in Multi-Ethnic Cohorts from Southeast Asia.	Coronary artery disease	1,778 Chinese ancestry cases, 391 Malay ancestry cases, 5,164 Chinese ancestry controls, 2,212 Malay ancestry controls	291 Asian Indian cases, 1,848 Asian Indian controls	11q23.3	APOA5, ZPR1, BUD13, APOA4	rs2075291-A	0.055	7E-10		1.636	[1.479-1.793]	Illumina [at least 5827330] (imputed)	N
1475	chr11	116661391	116661392	rs2075291	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	11q23.3	APOA5	rs2075291-A	0.06	1E-29		0.3	[0.24-0.36] unit decrease	Illumina [286795]	N
1475	chr11	116661391	116661392	rs2075291	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q23.3	NR	rs2075291-C	0.9355	4E-6		0.1242	[0.071-0.177] unit increase	Illumina [up to 1980188] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs201079485-?	NR	3E-53		0.955462	[0.83-1.08] unit increase	NR [9800000] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	11q23.3		rs201079485-?	NR	1E-12		0.44148	[0.32-0.56] unit increase	NR [9800000] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs201079485-?	NR	3E-26		0.641584	[0.52-0.76] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs201079485-?	NR	7E-10		0.394216	[0.27-0.52] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs201079485-A	NR	8E-39		0.9193	[0.78-1.06] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116661655	116661656	rs201079485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs201079485-A	NR	5E-14		0.5502	[0.41-0.69] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0574	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0628	[0.046-0.079] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.064	[0.047-0.081] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0768	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0562	[0.041-0.071] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0575	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0644	[0.047-0.081] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0739	[0.054-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.1273	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0875	[0.064-0.111] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0769	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.1275	[0.094-0.161] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0539	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0815	[0.06-0.103] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0867	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0672	[0.049-0.085] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0661	[0.048-0.084] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0745	[0.055-0.094] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0592	[0.044-0.075] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0658	[0.048-0.083] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0857	[0.063-0.109] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.1544	[0.11-0.2] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.1275	[0.094-0.161] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0658	[0.048-0.083] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0491	[0.036-0.062] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0662	[0.049-0.084] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0479	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.059	[0.043-0.075] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.066	[0.048-0.084] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0723	[0.053-0.092] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0872	[0.064-0.111] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0909	[0.067-0.115] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0619	[0.045-0.078] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0542	[0.04-0.069] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.1148	[0.084-0.145] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0576	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0569	[0.042-0.072] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.1178	[0.086-0.149] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0768	[0.056-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0832	[0.061-0.105] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.051	[0.037-0.065] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0478	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.1793	[0.13-0.23] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0713	[0.052-0.09] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.087	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.086	[0.063-0.109] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0517	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0867	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0742	[0.054-0.094] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0885	[0.065-0.112] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0865	[0.063-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0574	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.1273	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0778	[0.057-0.099] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-A	NR	2E-13		0.0753	[0.055-0.095] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0784	[0.058-0.099] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-T	NR	2E-13		0.0817	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0522	[0.038-0.066] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.0867	[0.064-0.11] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0576	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-C	NR	2E-13		0.1275	[0.094-0.161] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0726	[0.053-0.092] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116661825	116661826	rs2072560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs2072560-G	NR	2E-13		0.0735	[0.054-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662296	116662297	rs200831171	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs200831171-?	NR	4E-43		1.16205	[0.99-1.33] unit increase	NR [9800000] (imputed)	N
1475	chr11	116662296	116662297	rs200831171	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs200831171-?	NR	5E-18		0.75142	[0.58-0.92] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116662330	116662331	rs12287066	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q23.3	APOA5	rs12287066-?	NR	3E-446		0.2248	[0.22-0.23] unit increase	Affymetrix [5701386] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-12		0.169064	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-11		0.157693	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	8E-12		0.16762	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-12		0.166822	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-10		0.147643	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	6E-11		0.158636	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-10		0.150732	[0.1-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	2E-12		0.166235	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	4E-10		0.109992	[0.076-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs3135506-C	NR	5E-11		0.118856	[0.083-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	7E-29		0.0563	[0.046-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	4E-537		0.2429	[0.23-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	6E-103		0.1057	[0.096-0.115] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	4E-16		0.04	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	7E-89		0.0982	[0.089-0.108] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	9E-98		0.1076	[0.098-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	1E-21		0.0471	[0.037-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-C	NR	3E-120		0.1148	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	11q23.3	APOA5	rs3135506-?		2E-9	(African American)	0.29291716	[0.2-0.39] unit increase	Illumina [13620258] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q23.3	NR	rs3135506-C	0.062721	2E-15		0.029643	[0.022-0.037] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs3135506-?	NR	4E-80		0.271	[0.24-0.3] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs3135506-?	NR	2E-18		0.118	[0.093-0.143] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs3135506-?	NR	4E-80		0.1372446	[0.12-0.15] unit increase	Illumina [31978265] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs3135506-?	NR	4E-13		4.542495	[3.31-5.77] unit increase	Illumina [32003504] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs3135506-?	NR	2E-18		1.700025	[1.32-2.08] unit decrease	Illumina [31978362] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	APOA5	rs3135506-C	0.071	2E-93		0.1053	[0.095-0.115] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	NR	2E-219		0.245	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.941	6E-8	(AA)	0.258	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.936	3E-182	(EA)	0.245	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.897	1E-29	(Hispanic)	0.251	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	NR	3E-26		0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.936	1E-19	(EA)	0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.897	2E-7	(Hispanic)	0.127	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	NR	3E-36		0.089	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662406	116662407	rs3135506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs3135506-G	0.936	3E-33	(EA)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	11q23.3		rs651821-T	0.644712	3E-611		0.223665	[0.22-0.23] unit decrease	Illumina [13471903] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	11q23.3		rs651821-T	0.644198	3E-11		0.0252222	[0.018-0.033] unit increase	Illumina [13476266] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-25		0.0318	[0.026-0.038] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	11q23.3		rs651821-T	0.645049	1E-13		0.028268	[0.021-0.036] unit decrease	Illumina [13477028] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q23.3		rs651821-T	NR	6E-293		0.1266	[0.12-0.13] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1063	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0372	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0429	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0739	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0696	[0.048-0.091] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0805	[0.056-0.105] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0701	[0.049-0.091] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1062	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0384	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0725	[0.05-0.095] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0563	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0805	[0.056-0.105] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0609	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(51:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0633	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0384	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0883	[0.061-0.115] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.1063	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(48:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0488	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0697	[0.049-0.091] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0879	[0.061-0.115] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:2)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.055	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0708	[0.049-0.092] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0487	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(40:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.1063	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0396	[0.028-0.052] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.1164	[0.081-0.152] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0433	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0834	[0.058-0.109] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0609	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0882	[0.061-0.115] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0837	[0.058-0.109] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0707	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.1063	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0722	[0.05-0.094] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0703	[0.049-0.092] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0435	[0.03-0.057] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0283	[0.02-0.037] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0309	[0.021-0.04] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0768	[0.053-0.1] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:1)_[M+H]1+/Phosphatidylcholine-P(34:0)_[M+H]1+/Phosphatidylethanolamine-O(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0561	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(32:0)_[M+H]1+/Phosphatidylethanolamine-O(35:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0367	[0.026-0.048] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(45:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0433	[0.03-0.057] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(32:0)_[M+H]1+/Phosphatidylethanolamine(35:0)_[M+H]1+/Phosphatidate(37:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0847	[0.059-0.111] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(44:6)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0405	[0.028-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:4)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0531	[0.037-0.069] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0565	[0.039-0.074] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0373	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0471	[0.033-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0418	[0.029-0.055] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0343	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0619	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.1062	[0.074-0.139] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0516	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.1025	[0.071-0.134] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:0)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.1063	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(32:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0717	[0.05-0.094] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0347	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0546	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.0642	[0.045-0.084] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.1025	[0.071-0.134] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-C	NR	1E-10		0.0355	[0.025-0.046] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-A	NR	1E-10		0.1066	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(17:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0405	[0.028-0.053] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.1069	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(16:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-G	NR	1E-10		0.0218	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs651821-T	NR	1E-10		0.0563	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116662578	116662579	rs651821	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in obesity	9,083 Korean ancestry cases, 7,008 Korean ancestry controls	NA	11q23.3	APOA5	rs651821-C	0.3	9E-44		1.43	[1.36-1.51]	Affymetrix [7975321]	N
1475	chr11	116662578	116662579	rs651821	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	11q23.3	APOA5	rs651821-C	0.3	2E-9		1.47	[1.42-1.53]	Affymetrix [7975321]	N
1475	chr11	116662578	116662579	rs651821	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?		8E-578		0.2269	[0.22-0.24] unit increase	Illumina [31500000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?		1E-159		0.1425	[0.13-0.15] unit decrease	Illumina [31500000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.344255	3E-10		0.025095	[0.017-0.033] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1475	chr11	116662578	116662579	rs651821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.348059	2E-12		0.030155	[0.022-0.039] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,231 Japanese ancestry men	2,599 Japanese ancestry men	11q23.3	APOA5	rs651821-T	0.6585	7E-31		0.0561	[0.046-0.066] unit increase	Illumina [7094228] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	9E-11	(XS_VLDL_FC)	0.07133466	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	8E-13	(LA)	0.07858244	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	6E-10	(L_HDL_PL)	0.045627963	NR unit decrease	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	4E-22	(S_VLDL_PL)	0.11477242	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	3E-14	(HDL_TG)	0.07134243	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	2E-11	(L_VLDL_C)	0.077878825	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	1E-9	(XS_VLDL_PL)	0.05747593	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	8E-7	(XS_VLDL_PL)	0.058799867	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	4E-9	(L_VLDL_C)	0.08639284	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	4E-21	(S_VLDL_PL)	0.11799717	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	3E-12	(LA)	0.082572855	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	2E-11	(HDL_TG)	0.08451159	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA5	rs651821-?	NR	1E-6	(XS_VLDL_FC)	0.07137405	NR unit increase	Illumina [609262]	N
1475	chr11	116662578	116662579	rs651821	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	11q23.3		rs651821-C	0.07	1E-42		21.7	[18.58-24.82] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	11q23.3		rs651821-C	0.07	3E-13		4.48	[3.26-5.70] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	11q23.3		rs651821-C	0.07	4E-12		1.64	[1.17-2.11] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs651821-?	NR	5E-60		0.08966981	[0.079-0.1] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs651821-?	NR	5E-11		3.060535	[2.15-3.97] unit decrease	Illumina [32003504] (imputed)	N
1475	chr11	116662578	116662579	rs651821	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs651821-?	NR	7E-8		0.822489	[0.52-1.12] unit increase	Illumina [31978362] (imputed)	N
1475	chr11	116662578	116662579	rs651821	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	APOA5	rs651821-C	0.3	1E-64		0.155	[0.14-0.17] unit increase	Affymetrix [at least 805769] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	NR	7E-287		0.246	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.274	4E-87	(East Asian)	0.32	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.191	5E-6	(South Asian)	0.333	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.121	2E-35	(Hispanic)	0.261	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.067	5E-181	(EA)	0.24	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	NR	1E-38		0.098	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.274	2E-7	(East Asian)	0.092	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.067	3E-31	(EA)	0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	NR	2E-6		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.067	4E-7	(EA)	0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	NR	2E-69		0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.274	3E-39	(East Asian)	0.196	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.121	1E-9	(Hispanic)	0.116	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs651821-C	0.067	2E-33	(EA)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?	NR	1E-537		0.2208	[0.21-0.23] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?	NR	3E-9		0.02616	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?	NR	3E-11		0.02925	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	11q23.3	APOA5	rs651821-?	NR	4E-9		0.02571	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1475	chr11	116662578	116662579	rs651821	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	11q23.3	APOA5, ZPR1	rs651821-T	0.901	7E-13		0.0692	[0.05-0.088] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1475	chr11	116662578	116662579	rs651821	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Triglyceride levels	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	11q23.3	APOA5	rs651821-C	0.28	2E-117		0.08	[0.08-0.09] unit increase	Illumina [4642479] (imputed)	N
1475	chr11	116662578	116662579	rs651821	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Metabolic syndrome	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	11q23.3	APOA5	rs651821-C	0.28	4E-17		1.28	[1.20-1.36]	Illumina [4642479] (imputed)	N
1475	chr11	116662578	116662579	rs651821	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	HDL cholesterol	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	11q23.3	APOA5	rs651821-C	0.28	6E-48		0.07	[0.060-0.080] mmol/L decrease	Illumina [4642479] (imputed)	N
1475	chr11	116662578	116662579	rs651821	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs651821-T	0.72	9E-47	(BMI unadjusted)	0.187	[0.16-0.21] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	Triglyceride levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	11q23.3	BUD13, APOA5, ZNF259, APOA4, APOC3, APOA1, KIAA0999, LOC645044APOA1	rs651821-G		1E-30	(Japanese)	0.32	[0.27-0.37] unit increase	Illumina [1294241]	N
1475	chr11	116662578	116662579	rs651821	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs651821-C	0.28	2E-59	(TG)	0.17	[0.14-0.20] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1475	chr11	116662578	116662579	rs651821	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	11q23.3	APOA1, APOC3, APOA4, APOA5	rs651821-?	NR	8E-20	(Val/serum TG)	0.27	[0.21-0.33] unit increase	Illumina [~ 7700000] (imputed)	N
1475	chr11	116662578	116662579	rs651821	22171074	Tan A	2011-12-30	Hum Mol Genet	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	11q23.3	APOA5	rs651821-?	NR	9E-26				Illumina [1940243] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-27		0.256408	[0.21-0.3] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-47		0.326182	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs45611741-C	0.99181	6E-51		0.336562	[0.29-0.38] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	7E-36		0.28805	[0.24-0.33] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-60		0.377462	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-79		0.426835	[0.38-0.47] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-35		0.279236	[0.24-0.32] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-38		0.304335	[0.26-0.35] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	8E-74		0.414689	[0.37-0.46] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-40		0.307375	[0.26-0.35] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-59		0.365803	[0.32-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-53		0.350727	[0.31-0.4] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-60		0.380428	[0.33-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-59		0.371721	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-45		0.327722	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-70		0.40797	[0.36-0.45] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-63		0.38941	[0.34-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-60		0.377724	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-55		0.363739	[0.32-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-49		0.34274	[0.3-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-44		0.327263	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-53		0.35341	[0.31-0.4] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-37		0.296845	[0.25-0.34] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-23		0.225347	[0.18-0.27] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-54		0.356595	[0.31-0.4] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-62		0.381335	[0.34-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-44		0.325058	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-44		0.323489	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-50		0.347527	[0.3-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-63		0.385864	[0.34-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-16		0.187989	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-60		0.375167	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-45		0.331225	[0.29-0.38] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-33		0.286493	[0.24-0.33] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-9		0.135146	[0.089-0.181] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-56		0.365362	[0.32-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	7E-20		0.190961	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-58		0.370637	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-53		0.357926	[0.31-0.4] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	3E-32		0.278759	[0.23-0.32] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	1E-23		0.236383	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	5E-72		0.397267	[0.35-0.44] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	1E-27		0.249773	[0.2-0.29] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	2E-46		0.327101	[0.28-0.37] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	2E-34		0.280332	[0.24-0.33] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	9E-59		0.369105	[0.32-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	7E-12		0.157867	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-14		0.175278	[0.13-0.22] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	2E-16		0.190903	[0.15-0.24] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-42		0.317139	[0.27-0.36] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-44		0.317365	[0.27-0.36] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-22		0.230951	[0.18-0.28] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-14		0.178644	[0.13-0.23] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991812	4E-45		0.326492	[0.28-0.37] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-20		0.218023	[0.17-0.26] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-25		0.24899	[0.2-0.3] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-21		0.223236	[0.18-0.27] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-60		0.377753	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-25		0.245956	[0.2-0.29] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-22		0.233808	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-61		0.379093	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-18		0.183575	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	8E-65		0.388956	[0.34-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-47		0.340225	[0.29-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	7E-13		0.16764	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	9E-14		0.170011	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	1E-49		0.34866	[0.3-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	4E-14		0.177213	[0.13-0.22] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-28		0.233044	[0.19-0.27] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-14		0.181164	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-46		0.323469	[0.28-0.37] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-70		0.406892	[0.36-0.45] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-28		0.249632	[0.21-0.29] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-69		0.400837	[0.36-0.45] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	8E-22		0.203102	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-64		0.381896	[0.34-0.43] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991703	2E-12		0.166316	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-37		0.301467	[0.26-0.35] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	7E-10		0.143924	[0.098-0.19] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-60		0.377928	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-11		0.160857	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-14		0.182913	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-57		0.368604	[0.32-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-19		0.186159	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	7E-64		0.387429	[0.34-0.43] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-38		0.307384	[0.26-0.35] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-13		0.157057	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991811	4E-12		0.156789	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	9E-13		0.167728	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-61		0.378116	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-49		0.347518	[0.3-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-11		0.156552	[0.11-0.2] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-24		0.242297	[0.2-0.29] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-59		0.374741	[0.33-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-18		0.183696	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-61		0.380017	[0.34-0.42] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-37		0.301071	[0.25-0.35] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-56		0.353082	[0.31-0.4] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs45611741-C	0.99181	1E-32		0.282936	[0.24-0.33] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-17		0.197328	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-27		0.258515	[0.21-0.31] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-46		0.334411	[0.29-0.38] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-45		0.316186	[0.27-0.36] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-23		0.234883	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-65		0.393806	[0.35-0.44] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-43		0.319651	[0.27-0.37] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-45		0.332868	[0.29-0.38] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	8E-23		0.234079	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-9		0.139902	[0.093-0.187] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	7E-46		0.334998	[0.29-0.38] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-29		0.237142	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-65		0.393929	[0.35-0.44] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-18		0.210166	[0.16-0.26] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-32		0.252944	[0.21-0.29] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-54		0.348323	[0.3-0.39] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-31		0.268346	[0.22-0.31] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-48		0.343466	[0.3-0.39] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-41		0.300983	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-66		0.389489	[0.35-0.43] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	1E-36		0.283709	[0.24-0.33] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	5E-56		0.36574	[0.32-0.41] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-54		0.360226	[0.31-0.41] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	2E-18		0.209318	[0.16-0.26] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-53		0.357263	[0.31-0.4] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	6E-27		0.225936	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	3E-65		0.392391	[0.35-0.44] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-55		0.348325	[0.3-0.39] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs45611741-C	0.991808	4E-12		0.146371	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - atorvastatin (UKB data field 20003_1141146234)	13,604 European ancestry cases, 442,672 European ancestry controls	NA	11q23.3		rs45611741-T	0.006406	3E-10		0.51	[0.35-0.67] unit increase	NR [11842647] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.3	APOA5	rs45611741-T	0.00794499999999998	2E-12		0.09260023	[0.067-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q23.3	APOA5	rs45611741-T	0.00795400000000002	1E-10		0.0800964	[0.055-0.105] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr11	116663127	116663128	rs45611741	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs45611741-?	NR	1E-6		0.449	[0.27-0.63] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116663706	116663707	rs662799	35046404	Chou WC	2022-01-19	NPJ Genom Med	A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4.	Hyperlipidemia	3,310 Taiwanese ancestry cases, 6,404 Taiwanese ancestry controls	829 Taiwanese ancestry cases, 1,833 Taiwanese ancestry controls	11q23.3		rs662799-?	NR	1E-76		1.79	[1.68-1.91]	Affymetrix [597758]	N
1475	chr11	116663706	116663707	rs662799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	11q23.3		rs662799-A	NR	9E-13		0.0515	[0.037-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	11q23.3		rs662799-A	0.646072343	3E-29		0.10974301	[0.091-0.129] unit decrease	Illumina [13429980] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q23.3		rs662799-A	NR	7E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	11q23.3		rs662799-A	0.645205	1E-11		0.0224271	[0.016-0.029] unit increase	Illumina [13478961] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_53:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-10		0.194965	[0.13-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-11		0.205867	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-10		0.196226	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	7E-12		0.20738	[0.15-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-10		0.183612	[0.13-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-10		0.197771	[0.14-0.26] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-10		0.160841	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-15		0.200138	[0.15-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	7E-12		0.174246	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	1E-13		0.190549	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-13		0.184408	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:0_[M+H]1+/Phosphatidylethanolamine_35:0_[M+H]1+/Phosphatidate_37:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-11		0.165249	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-12		0.1818	[0.13-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-10		0.154436	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-11		0.171017	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	6E-13		0.179335	[0.13-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	6E-11		0.167847	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-13		0.182034	[0.13-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	2E-11		0.153128	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	5E-11		0.1485	[0.1-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	3E-11		0.150105	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	1E-10		0.141962	[0.099-0.185] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs662799-G	NR	1E-11		0.128819	[0.092-0.166] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116663706	116663707	rs662799	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q23.3	APOA5	rs662799-?	NR	9E-14		0.0544995	[0.04-0.069] unit decrease	Illumina [4804024] (imputed)	N
1475	chr11	116663706	116663707	rs662799	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	11q23.3	APOA5	rs662799-G	0.14	6E-9		1.07	[1.05-1.09]	Illumina [5167567] (imputed)	N
1475	chr11	116663706	116663707	rs662799	32335043	Park S	2020-04-22	J Acad Nutr Diet	Alcohol, Carbohydrate, and Calcium Intakes and Smoking Interactions with APOA5 rs662799 and rs2266788 were Associated with Elevated Plasma Triglyceride Concentrations in a Cross-Sectional Study of Korean Adults.	Triglyceride levels	21,014 Korean ancestry individuals with TG < 150mg/dL, 7,424 Korean ancestry individuals with TG >= 150 mg/dL	NA	11q23.3	ZNF259, APOA4, APOA5	rs662799-G	0.2986	9E-150		1.855	[1.735-1.984]	Affymetrix [830000]	N
1475	chr11	116663706	116663707	rs662799	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs662799-?	NR	3E-64		0.189	[0.17-0.21] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116663706	116663707	rs662799	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs662799-?	NR	6E-11		0.071	[0.049-0.093] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	11q23.3	APOE5	rs662799-?	NR	4E-8		0.066	[0.043-0.089] unit increase	Illumina [6108828] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Metabolic syndrome	1,362 Korean ancestry cases, 6,061 Korean ancestry controls	NA	11q23.3	APOA5	rs662799-G	0.288	3E-10		1.346	[1.227-1.476]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	11q23.3	APOA5	rs662799-G	0.284	2E-16		1.472	[1.342-1.614]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	11q23.3	APOA5	rs662799-G	0.278	5E-34		1.77	[1.614-1.94]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	2,253 Korean ancestry cases and controls	NA	11q23.3	APOA5	rs662799-G	0.277	8E-11		1.732	[1.467-2.045]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,431 Japanese ancestry women	3,109 Japanese ancestry women	11q23.3	APOA5	rs662799-A	0.6539	8E-26		0.0449	[0.036-0.053] unit increase	Illumina [7094228] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs662799-?	NR	3E-64		0.0960602	[0.085-0.107] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs662799-?	NR	3E-10		3.011785	[2.07-3.95] unit decrease	Illumina [32003504] (imputed)	N
1475	chr11	116663706	116663707	rs662799	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs662799-?	NR	6E-11		1.024395	[0.72-1.33] unit increase	Illumina [31978362] (imputed)	N
1475	chr11	116663706	116663707	rs662799	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	11q23.3	APOA5	rs662799-G	0.3	7E-32		0.0473	[0.039-0.055] unit decrease	Affymetrix [at least 805769] (imputed)	N
1475	chr11	116663706	116663707	rs662799	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Triglycerides	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	11q23.3	APOA5	rs662799-G	0.245	3E-16	(Filipino)	0.342	unit increase	Affymetrix, Illumina [up to 12553142] (imputed)	N
1475	chr11	116663706	116663707	rs662799	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Triglycerides	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	11q23.3	APOA5	rs662799-A	0.755	3E-16	(Filipino)	0.342	[0.26-0.42] unit decrease	Affymetrix, Illumina [up to 12553142] (imputed)	N
1475	chr11	116663706	116663707	rs662799	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	11q23.3	APOA5	rs662799-?	NR	4E-11		0.02899	[0.02-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1475	chr11	116663706	116663707	rs662799	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Triglyceride levels	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	11q23.3	APOA5	rs662799-?		7E-84	(additive)	32.91	[29.62-36.20] unit increase	Affymetrix [583469]	N
1475	chr11	116663706	116663707	rs662799	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Metabolic syndrome	1,811 Taiwanese Han Chinese ancestry cases, 8,489 Taiwanese Han Chinese ancestry controls	NA	11q23.3	APOA5	rs662799-?		4E-6	(additive)	1.25	[1.14-1.37]	Affymetrix [583469]	N
1475	chr11	116663706	116663707	rs662799	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	HDL cholesterol	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	11q23.3	APOA5	rs662799-?		3E-26	(additive)	2.47	[2.02-2.92] unit decrease	Affymetrix [583469]	N
1475	chr11	116663706	116663707	rs662799	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-A	0.92	4E-315	(Trans-ethnic initial)	0.247	[0.23-0.26] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1475	chr11	116663706	116663707	rs662799	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-A	0.725	2E-125	(Asian initial, BMI unadjusted)	0.279	[0.26-0.3] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1475	chr11	116663706	116663707	rs662799	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-A	0.92	3E-71	(Trans-ethnic initial)	0.1	[0.086-0.114] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1475	chr11	116663706	116663707	rs662799	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-A	0.725	2E-71	(Asian initial, BMI unadjusted)	0.182	[0.16-0.2] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1475	chr11	116663706	116663707	rs662799	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-G	0.28	4E-213		0.081	[0.075-0.087] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1475	chr11	116663706	116663707	rs662799	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	11q23.3	APOA1, APOC3, APOA4, APOA5	rs662799-G	0.28	2E-85		2.516	[2.27-2.76] unit decrease	Affymetrix, Illumina [2573667] (imputed)	N
1475	chr11	116663706	116663707	rs662799	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	11q23.3	APOA5	rs662799-A	0.76	6E-24	(TG)	0.14	[0.12-0.16] unit decrease	Affymetrix [~ 3700000] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs9804646-?	NR	3E-14		0.03886206	[0.029-0.049] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	NR	3E-33		0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	0.911	4E-17	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	0.793	1E-18	(East Asian)	0.159	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	NR	3E-8		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	0.911	2E-7	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	NR	1E-6		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs9804646-C	0.793	8E-14	(East Asian)	0.125	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116665078	116665079	rs9804646	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	NR	rs9804646-?	NR	5E-106		0.1509	[0.14-0.16] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116665552	116665553	rs17520254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs17520254-G	NR	2E-62		0.085	[0.075-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116665552	116665553	rs17520254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs17520254-G	NR	7E-46		0.0759	[0.066-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116665552	116665553	rs17520254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs17520254-G	NR	1E-32		0.0638	[0.053-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116665552	116665553	rs17520254	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	APOA5	rs17520254-C	0.940439	1E-44		0.0581661	[0.05-0.066] unit decrease	Affymetrix [NR] (imputed)	N
1475	chr11	116667336	116667337	rs633389	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	NR	rs633389-?	NR	1E-12		0.03142	[0.023-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs75919952-?	NR	5E-10		0.05509353	[0.038-0.072] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs75919952-?	NR	9E-21		2.189663	[1.73-2.65] unit increase	Illumina [31978362] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs75919952-C	NR	5E-14		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs75919952-C	0.948	2E-9	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs75919952-C	NR	2E-12		0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs75919952-C	0.948	4E-6	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116667544	116667545	rs75919952	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs75919952-C	0.915	5E-9	(Hispanic)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116669427	116669428	rs35412484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs35412484-C	NR	3E-47		0.0456	[0.039-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116669427	116669428	rs35412484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs35412484-C	NR	8E-10		0.0194	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.2138	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.0415	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-A	NR	2E-10		0.0795	[0.055-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.039	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.0514	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.1057	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-C	NR	2E-10		0.0906	[0.063-0.118] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.0428	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-A	NR	2E-10		0.0962	[0.067-0.126] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.0468	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.1312	[0.091-0.172] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.0366	[0.025-0.048] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.1022	[0.071-0.134] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-C	NR	2E-10		0.0537	[0.037-0.07] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.0525	[0.036-0.069] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-A	NR	2E-10		0.056	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.0413	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-C	NR	2E-10		0.0486	[0.034-0.063] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-C	NR	2E-10		0.0397	[0.028-0.052] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-A	NR	2E-10		0.049	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-G	NR	2E-10		0.0586	[0.041-0.077] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589567-T	NR	2E-10		0.0277	[0.019-0.036] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	11q23.3	ZNF259	rs6589567-A	0.23	1E-16	(Indian)	13.09	[9.99-16.19] unit increase	Illumina [551825]	N
1475	chr11	116670675	116670676	rs6589567	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	11q23.3	ZPR1, APOA5, APOA4	rs6589567-T	0.1178	5E-30		8.971131	[7.43-10.52] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116670675	116670676	rs6589567	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	11q23.3	APOA4, ZPR1, APOA5	rs6589567-T	0.1178	3E-10		1.4276218	[0.99-1.87] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	2E-11		0.0545	[0.038-0.071] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-T	NR	2E-11		0.034	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0588	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-A	NR	2E-11		0.058	[0.041-0.075] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0572	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-T	NR	2E-11		0.0404	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	2E-11		0.2166	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0398	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-T	NR	2E-11		0.1006	[0.071-0.13] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-T	NR	2E-11		0.1174	[0.083-0.152] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-A	NR	2E-11		0.0635	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	2E-11		0.0545	[0.038-0.071] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0481	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0651	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	2E-11		0.0572	[0.04-0.074] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-A	NR	2E-11		0.038	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	3E-11		0.0589	[0.042-0.076] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-A	NR	2E-11		0.0732	[0.052-0.095] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	2E-11		0.0542	[0.038-0.07] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-C	NR	3E-11		0.0503	[0.036-0.065] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-G	NR	2E-11		0.0374	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671004	116671005	rs4938313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs4938313-T	NR	2E-11		0.0518	[0.037-0.067] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0608	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0609	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0866	[0.06-0.113] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.071	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.1053	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0467	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0471	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.1055	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0587	[0.041-0.077] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0791	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0423	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.1442	[0.1-0.189] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.1057	[0.073-0.138] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-T	NR	2E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0703	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.1053	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.059	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-G	NR	2E-10		0.1054	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-C	NR	2E-10		0.0417	[0.029-0.055] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.0469	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671475	116671476	rs6589569	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs6589569-A	NR	2E-10		0.0327	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.0571	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-C	NR	8E-10		0.0452	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.0669	[0.046-0.088] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-A	NR	8E-10		0.0744	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-A	NR	8E-10		0.0552	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-C	NR	8E-10		0.0787	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.0648	[0.044-0.085] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0421	[0.029-0.055] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-C	NR	8E-10		0.074	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.1024	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.0325	[0.022-0.043] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0741	[0.05-0.098] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0591	[0.04-0.078] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0592	[0.04-0.078] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-G	NR	8E-10		0.0808	[0.055-0.106] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0325	[0.022-0.043] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-A	NR	8E-10		0.0466	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-C	NR	8E-10		0.0279	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-T	NR	8E-10		0.0706	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671822	116671823	rs9667814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9667814-A	NR	8E-10		0.0683	[0.047-0.09] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(54:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	7E-10		0.0453	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(53:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	8E-10		0.0736	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.0381	[0.026-0.05] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	7E-10		0.1774	[0.12-0.23] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	8E-10		0.038	[0.026-0.05] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	7E-10		0.048	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-A	NR	8E-10		0.047	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	8E-10		0.0671	[0.046-0.088] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-A	NR	8E-10		0.0643	[0.044-0.085] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0482	[0.033-0.063] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.0791	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.0622	[0.042-0.082] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0764	[0.052-0.101] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0367	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.1516	[0.1-0.2] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0612	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	7E-10		0.0835	[0.057-0.11] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	8E-10		0.0488	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0669	[0.046-0.088] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	7E-10		0.0677	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	7E-10		0.0679	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	8E-10		0.0578	[0.039-0.076] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	8E-10		0.0622	[0.042-0.082] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	7E-10		0.0709	[0.048-0.093] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-A	NR	8E-10		0.0827	[0.056-0.109] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	7E-10		0.0684	[0.047-0.09] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-T	NR	8E-10		0.0736	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	7E-10		0.0679	[0.046-0.089] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.0477	[0.032-0.063] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	8E-10		0.0473	[0.032-0.062] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.0635	[0.043-0.084] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-G	NR	8E-10		0.0466	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116671823	116671824	rs9666150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs9666150-C	NR	8E-10		0.068	[0.046-0.09] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	4E-30		0.0912	[0.076-0.107] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-A	NR	3E-30		0.135	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(52:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	3E-30		0.1503	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(50:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	5E-30		0.1502	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	4E-30		0.1364	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:3)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-T	NR	4E-30		0.0926	[0.077-0.108] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	3E-30		0.0928	[0.077-0.109] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-T	NR	3E-30		0.095	[0.079-0.111] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	3E-30		0.0905	[0.075-0.106] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-A	NR	3E-30		0.1097	[0.091-0.129] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	5E-30		0.1052	[0.087-0.123] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	3E-30		0.1059	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	3E-30		0.1503	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-T	NR	4E-30		0.0852	[0.07-0.1] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	4E-30		0.0926	[0.077-0.108] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	4E-30		0.1058	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	4E-30		0.1257	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(36:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	3E-30		0.1523	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:3)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	5E-30		0.1105	[0.091-0.13] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:2)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	4E-30		0.1066	[0.088-0.125] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol(34:1)_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	5E-30		0.0777	[0.064-0.091] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-T	NR	4E-30		0.0743	[0.062-0.087] unit increase	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:1)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-C	NR	5E-30		0.1257	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(18:0)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-G	NR	5E-30		0.0527	[0.044-0.062] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116672012	116672013	rs11216140	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	5,662 Pakistani ancestry individuals	NA	11q23.3		rs11216140-T	NR	4E-30		0.091	[0.075-0.107] unit decrease	Illumina [6720657] (imputed)	N
1475	chr11	116674502	116674503	rs625524	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs625524-A	NR	2E-9		0.0446	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116677369	116677370	rs1729407	27412012	Lamina C	2016-07-12	Hum Mol Genet	A genome-wide association meta-analysis on apolipoprotein A-IV concentrations.	Apolipoprotein A-IV levels	13,813 European ancestry individuals	2,267 European ancestry individuals	11q23.3	APOA4	rs1729407-C	0.485	7E-44		0.2645	[0.21-0.32] unit decrease	Affymetrix, Illumina [at least 7000000] (imputed)	N
1475	chr11	116679154	116679155	rs75542613	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	11q23.3	APOA5, APOA4	rs75542613-?	NR	3E-15		0.06857	[0.052-0.086] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116681007	116681008	rs1263173	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	11q23.3	APOA5	rs1263173-A	0.21	2E-7		0.0873	[0.054-0.12] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1475	chr11	116682667	116682668	rs149137426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs149137426-A	0.01045	6E-9	(ORM1)	0.937	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr11	116682667	116682668	rs149137426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs149137426-A	0.01045	6E-9	(GARS)	0.04385	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr11	116682667	116682668	rs149137426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs149137426-A	0.01045	3E-8	(CTSS)	0.01379	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr11	116682667	116682668	rs149137426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs149137426-A	0.01045	2E-8	(HEXA)	0.04782	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr11	116682667	116682668	rs149137426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs149137426-A	0.01045	2E-10	(CTSC)	0.03193	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr11	116684027	116684028	rs7396835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs7396835-T	NR	2E-11		0.116036	[0.082-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116684027	116684028	rs7396835	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	11q23.3	NR	rs7396835-?	NR	2E-7		1.272	[1.162-1.393]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116684027	116684028	rs7396835	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	11q23.3	intergenic	rs7396835-T	0.32	1E-9	(TG)	0.23	[NR] mg/dL increase	Affymetrix [408775]	N
1475	chr11	116684163	116684164	rs7396851	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	11q23.3	NR	rs7396851-?	NR	3E-7		1.269	[1.159-1.39]	Affymetrix [at least 584061] (imputed)	N
1475	chr11	116688382	116688383	rs2727790	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.3	APOA5	rs2727790-A	NR	9E-6		1.2525051	NR	Affymetrix, Illumina [8278136] (imputed)	N
1475	chr11	116688665	116688666	rs145859971	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	intergenic	rs145859971-A	0.0608	8E-10		0.0743	[0.051-0.098] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs12721043-C	0.989242	3E-11		0.129668	[0.092-0.168] unit increase	NR [11722792] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs12721043-C	0.989242	1E-9		0.119721	[0.081-0.158] unit increase	NR [11722792] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs12721043-C	0.989242	4E-8		0.107821	[0.069-0.146] unit increase	NR [11722792] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs12721043-C	0.989242	2E-9		0.118129	[0.08-0.157] unit increase	NR [11722792] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs12721043-C	0.989242	2E-16		0.160137	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs12721043-A	NR	8E-83		0.2209	[0.2-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs12721043-A	NR	9E-81		0.2281	[0.2-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116692292	116692293	rs12721043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs12721043-A	NR	2E-74		0.2199	[0.2-0.24] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693353	116693354	rs5093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs5093-A	NR	3E-16		0.0738	[0.056-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693353	116693354	rs5093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs5093-A	NR	7E-23		0.0893	[0.071-0.107] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693870	116693871	rs12721041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs12721041-T	NR	2E-91		0.193	[0.17-0.21] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693870	116693871	rs12721041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs12721041-T	NR	9E-20		0.0866	[0.068-0.105] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693870	116693871	rs12721041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs12721041-T	NR	2E-19		0.0861	[0.067-0.105] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116693870	116693871	rs12721041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs12721041-T	NR	4E-20		0.0915	[0.072-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116693870	116693871	rs12721041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs12721041-T	NR	6E-27		0.1027	[0.084-0.121] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116697080	116697081	rs150555490	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs150555490-T	NR	1E-19		0.0467	[0.037-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116697080	116697081	rs150555490	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	APOA4	rs150555490-C	0.943131	2E-19		0.0387462	[0.03-0.047] unit increase	Affymetrix [NR] (imputed)	N
1475	chr11	116699388	116699389	rs10790164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10790164-A	NR	5E-11		0.198125	[0.14-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116701121	116701122	rs2070669	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	11q23.3		rs2070669-?	NR	1E-8		0.005831	[0.0038-0.0078] unit increase	NR [NR]	N
1475	chr11	116701121	116701122	rs2070669	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs2070669-?	NR	2E-25		0.02284	[0.018-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1475	chr11	116701121	116701122	rs2070669	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs2070669-?	NR	2E-25		0.02316	[0.019-0.028] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs76353203-?	NR	1E-74		1.41431	[1.26-1.57] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	11q23.3		rs76353203-?	NR	2E-8		0.470531	[0.31-0.63] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs76353203-?	NR	3E-39		0.975158	[0.82-1.13] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs76353203-?	NR	2E-23		0.793855	[0.63-0.96] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	11q23.3	APOC3	rs76353203-?	NR	4E-10	(HDL)	1.03	[0.72-1.34] unit increase	Illumina [14948665] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	11q23.3	APOC3	rs76353203-?	NR	3E-11	(triglycerides)	1.1	[0.79-1.41] unit decrease	Illumina [14948665] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Triglyceride levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	APOC3	rs76353203-T	0.022	7E-17	(Mylopotamos)	1.073	[0.82-1.33] unit decrease	Illumina [at least 13541454] (imputed)	N
1475	chr11	116701352	116701353	rs76353203	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	High density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	APOC3	rs76353203-T	0.022	2E-12	(Mylopotamos)	0.919	[0.66-1.17] unit increase	Illumina [at least 13541454] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	2E-787		1.2616	[1.22-1.3] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	8E-49		0.316323	[0.27-0.36] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	4E-19		0.176819	[0.14-0.22] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	3E-11		0.125718	[0.086-0.166] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	8E-16		0.154326	[0.11-0.19] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	3E-10		0.132338	[0.09-0.174] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	1E-500		0.992167	[0.95-1.03] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	1E-11		0.150338	[0.11-0.19] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	6E-15		0.166469	[0.12-0.21] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	4E-10		0.132357	[0.091-0.174] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	4E-12		0.148444	[0.11-0.19] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	5E-20		0.184285	[0.14-0.23] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs138326449-?	NR	1E-325		0.837274	[0.79-0.88] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q23.3	APOC3	rs138326449-A	0.00156299999999998	4E-35		0.37176332	[0.31-0.43] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	APOC3	rs138326449-A	0.0033	5E-134		0.7285	[0.67-0.79] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1475	chr11	116701353	116701354	rs138326449	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	11q23.3	APOC3	rs138326449-A	0.0032	3E-20		0.98099405	[0.77-1.19] mg/dl increase	Illumina [24111857] (imputed)	N
1475	chr11	116701534	116701535	rs4520	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	11q23.3		rs4520-T	0.24532	8E-16		0.0387186	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
1475	chr11	116701534	116701535	rs4520	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs4520-C	NR	8E-9	(Total_PI)	0.1864	[0.12-0.25] unit decrease	Illumina [~ 9300000] (imputed)	N
1475	chr11	116701534	116701535	rs4520	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	11q23.3	APOA5	rs4520-C	NR	3E-8	(PI(18:0;0-18:1;0))	0.1802	[0.12-0.24] unit decrease	Illumina [~ 9300000] (imputed)	N
1475	chr11	116701548	116701549	rs773670132	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs773670132-?	NR	2E-9		1.33912	[0.91-1.77] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	11q23.3		rs147210663-?	NR	6E-71		0.944085	[0.84-1.05] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs147210663-?	NR	5E-35		0.657943	[0.55-0.76] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs147210663-?	NR	3E-24		0.560669	[0.45-0.67] unit increase	NR [9800000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs147210663-A	NR	3E-22		0.5668	[0.45-0.68] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs147210663-A	NR	7E-12		0.4213	[0.3-0.54] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs147210663-A	NR	1E-9		0.3724	[0.25-0.49] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116701559	116701560	rs147210663	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs147210663-?	NR	2E-12		0.762	[0.55-0.98] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116701668	116701669	rs2070667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.3	APOC3	rs2070667-A	0.0487	1E-10		0.05496302	[0.038-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1475	chr11	116702122	116702123	rs5141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,360 Icelandic ancestry individuals	NA	11q23.3		rs5141-T	0.1159	8E-35		0.351974	[0.3-0.41] unit increase	Illumina [7506463] (imputed)	N
1475	chr11	116702361	116702362	rs645901	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q23.3	APOC3	rs645901-C	0.8657	2E-10		0.03454995	[0.024-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1475	chr11	116703145	116703146	rs5130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	APOC3	rs5130-T	0.866678	2E-18		0.028993493	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr11	116703145	116703146	rs5130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q23.3	NR	rs5130-T	0.863801	3E-45		0.037927	[0.033-0.043] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-10		0.164684	[0.11-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	4E-10		0.161754	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	3E-11		0.171523	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-10		0.131882	[0.091-0.172] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	3E-10		0.158509	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	7E-11		0.170165	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-11		0.171238	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-11		0.139934	[0.099-0.181] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-17		0.175826	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	9E-13		0.149093	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	5E-12		0.140211	[0.1-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-14		0.1627	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	3E-14		0.155673	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	4E-11		0.140425	[0.099-0.182] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	7E-11		0.133485	[0.093-0.174] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	5E-14		0.154266	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-11		0.124889	[0.088-0.161] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	1E-11		0.125272	[0.089-0.162] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-11		0.127303	[0.09-0.164] unit increase	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	3E-10		0.114476	[0.079-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs5128-G	NR	2E-14		0.11917	[0.089-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116703639	116703640	rs5128	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	NR	rs5128-C	0.916	5E-44	(Beta-endorphin, POMC.2558.51.3)	0.6	[0.52-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
1475	chr11	116703670	116703671	rs4225	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	11q23.3		rs4225-?	NR	5E-8		0.0052262	[0.0033-0.0071] unit increase	NR [NR]	N
1475	chr11	116704177	116704178	rs7123454	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	NR	rs7123454-?	NR	3E-75		0.08217	[0.073-0.091] unit increase novel	Illumina [6108953] (imputed)	N
1475	chr11	116705277	116705278	rs12721030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11q23.3		rs12721030-C	0.807733	4E-18		0.0426609	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116705277	116705278	rs12721030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs12721030-C	0.807713	1E-8		0.0297055	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116705510	116705511	rs12721029	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,360 Icelandic ancestry individuals	NA	11q23.3		rs12721029-T	0.02387	1E-40		0.814862	[0.7-0.93] unit increase	Illumina [7506463] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	6E-47		0.0624386	[0.054-0.071] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	5E-88		0.0904484	[0.082-0.099] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	2E-14		0.0347634	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	1E-17		0.038844	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	8E-17		0.0371203	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11q23.3		rs525028-G	0.291454	4E-55		0.0670289	[0.059-0.075] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	9E-16		0.0355206	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	9E-90		0.0908324	[0.082-0.1] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	1E-10		0.0293351	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11q23.3		rs525028-G	0.291454	4E-68		0.075168	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11q23.3		rs525028-G	0.291454	3E-67		0.0739108	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	3E-15		0.0358604	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	5E-91		0.0904734	[0.082-0.099] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525028-G	0.291454	3E-12		0.0300942	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	7E-63		0.0764715	[0.068-0.085] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	4E-17		0.0380767	[0.029-0.047] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs525028-G	0.291449	1E-12		0.0320705	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1475	chr11	116705515	116705516	rs525028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	11q23.3		rs525028-A	NR	9E-12		0.0453	[0.032-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1475	chr11	116705515	116705516	rs525028	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	11q23.3	NR	rs525028-?	NR	4E-17	(conditional on round 4)	0.05190519	[0.04-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116705589	116705590	rs12721028	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,360 Icelandic ancestry individuals	NA	11q23.3		rs12721028-G	0.1175	7E-50		0.428053	[0.37-0.48] unit decrease	Illumina [7506463] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	11q23.3		rs12718462-C	0.077625	3E-17		0.0570656	[0.044-0.07] unit decrease	Illumina [13476599] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs12718462-C	NR	2E-24		0.049	[0.04-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs12718462-C	NR	1E-24		0.0492	[0.04-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs12718462-C	NR	3E-14		0.0364	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs12718462-C	NR	1E-12		0.0342	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116705718	116705719	rs12718462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs12718462-C	NR	6E-35		0.062	[0.052-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116706046	116706047	rs12721025	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	11q23.3	NR	rs12721025-A	0.060630697738701465	1E-9	(EA)	1.45	[1.33-1.57]	Illumina [6576307] (imputed)	N
1475	chr11	116706046	116706047	rs12721025	23989729	Feenstra B	2013-08-21	JAMA	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls	11q23.3	APOA1	rs12721025-A	0.0569	2E-10		1.59	[1.38-1.83]	Illumina [9737928] (imputed)	N
1475	chr11	116706934	116706937	rs532489785	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs532489785-?	NR	1E-18		0.563235	[0.43-0.7] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116706934	116706937	rs532489785	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs532489785-?	NR	3E-15		0.532881	[0.39-0.67] unit increase	NR [9800000] (imputed)	N
1475	chr11	116707043	116707044	rs138407155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs138407155-?	NR	4E-50		0.485094	[0.42-0.55] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116707337	116707338	rs7116797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q23.3		rs7116797-G	NR	1E-25		0.0262	[0.021-0.031] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1475	chr11	116707337	116707338	rs7116797	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.3	APOA1	rs7116797-A		6E-8		0.311	unit increase	Affymetrix [at least 2696785] (imputed)	N
1475	chr11	116707337	116707338	rs7116797	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.3	APOA1	rs7116797-A		2E-9		0.214	unit increase	Affymetrix [at least 2696785] (imputed)	N
1475	chr11	116707683	116707684	rs2070665	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	11q23.3	APOA1	rs2070665-?	NR	2E-13	(FAw6)	0.049065445	NR unit increase	Illumina [609262]	N
1475	chr11	116707683	116707684	rs2070665	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	11q23.3	APOA1	rs2070665-?	NR	2E-6	(FAw6)	0.056738555	NR unit increase	Illumina [609262]	N
1475	chr11	116707735	116707736	rs12718465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	11q23.3	NR	rs12718465-?	NR	8E-13		0.0863	[0.063-0.11] unit decrease novel	Illumina [6108953] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	11q23.3		rs199759119-?	NR	1E-9		0.204747	[0.14-0.27] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	11q23.3		rs199759119-?	NR	8E-51		0.485337	[0.42-0.55] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	11q23.3		rs199759119-?	NR	9E-83		0.649896	[0.58-0.72] unit decrease	NR [9800000] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs199759119-C	NR	2E-14		0.2939	[0.22-0.37] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs199759119-C	NR	5E-32		0.4724	[0.39-0.55] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116707738	116707739	rs199759119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs199759119-C	NR	3E-55		0.6284	[0.55-0.71] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116708412	116708413	rs670	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	APOA1	rs670-T	0.167	8E-64	(Beta-endorphin, POMC.2558.51.3)	0.54	[0.48-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
1475	chr11	116709437	116709438	rs1374117	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs1374117-?	NR	3E-17		0.02596	[0.02-0.032] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1475	chr11	116710967	116710968	rs613808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs613808-A	0.28369	3E-35		0.0571658	[0.048-0.066] unit increase	NR [11722792] (imputed)	N
1475	chr11	116710967	116710968	rs613808	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs613808-A	0.28369	2E-49		0.067928	[0.059-0.077] unit increase	NR [11722792] (imputed)	N
1475	chr11	116710967	116710968	rs613808	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q23.3		rs613808-?	NR	10E-29		0.0252663	[0.021-0.03] unit decrease	NR [6912294] (imputed)	N
1475	chr11	116710967	116710968	rs613808	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q23.3		rs613808-A	0.280007	1E-33		0.027	[0.023-0.031] unit decrease	NR [7250403] (imputed)	N
1475	chr11	116710967	116710968	rs613808	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	APOA1	rs613808-A	0.284602	7E-331		0.0849428	[0.081-0.089] unit increase	Affymetrix [NR] (imputed)	N
1475	chr11	116710967	116710968	rs613808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q23.3		rs613808-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1475	chr11	116710967	116710968	rs613808	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q23.3	NR	rs613808-A	0.28105	6E-9		0.0201897	[0.013-0.027] unit increase	NR [19129689] (imputed)	N
1475	chr11	116711179	116711180	rs11216157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	11q23.3		rs11216157-A	0.870902	1E-8		0.0352549	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116714292	116714293	rs141469619	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	SIK3	rs141469619-A	0.990121	5E-89		0.203826	[0.18-0.22] unit increase	Affymetrix [NR] (imputed)	N
1475	chr11	116714292	116714293	rs141469619	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q23.3	SIK3	rs141469619-A	0.99011	3E-12		0.0778728	[0.056-0.1] unit decrease	Affymetrix [NR] (imputed)	N
1475	chr11	116717662	116717663	rs614944	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs614944-T	0.982575	3E-11		0.105286	[0.074-0.136] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116718365	116718366	rs628418	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs628418-C	0.983755	3E-8		0.0857955	[0.055-0.116] unit increase	NR [11722792] (imputed)	N
1475	chr11	116718414	116718415	rs61905145	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11q23.3	NR	rs61905145-A	0.1475	3E-7		0.0212691	[0.013-0.029] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1475	chr11	116718801	116718802	rs7127590	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	11q23.3	LOC101929011	rs7127590-?	NR	9E-25		0.02544	[0.02-0.031] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1475	chr11	116718801	116718802	rs7127590	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs7127590-?	NR	5E-15		0.02233	[0.017-0.028] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1475	chr11	116722040	116722041	rs10047462	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10047462-G	NR	6E-11		0.131613	[0.092-0.171] unit decrease	Affymetrix [87696910] (imputed)	N
1475	chr11	116722040	116722041	rs10047462	21149283	Oexle K	2010-12-10	Hum Mol Genet	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	11q23.3	APOA	rs10047462-T	NR	4E-25	(sTfR)	0.041	[0.03-0.05] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1475	chr11	116722550	116722551	rs688456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs688456-G	0.807692	7E-17		0.042212	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116722550	116722551	rs688456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	11q23.3		rs688456-G	0.807692	3E-52		0.0750013	[0.065-0.085] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116726047	116726048	rs12099358	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	SIK3, APOA1-AS, AP000936.4, SIK3-IT1, AP000936.2, RNY4P6, AP000936.1	rs12099358-A	0.1557789	2E-26	(Beta-endorphin)	0.6234	[0.51-0.73] unit decrease	Affymetrix [509946]	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	9E-48		0.0710654	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	8E-41		0.0633487	[0.054-0.073] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	2E-45		0.0696449	[0.06-0.079] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	4E-42		0.0647993	[0.055-0.074] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	8E-45		0.0673791	[0.058-0.077] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	7E-49		0.0713934	[0.062-0.081] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	2E-54		0.0770765	[0.067-0.087] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116727935	116727936	rs625145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs625145-A	0.811872	4E-53		0.0740633	[0.065-0.084] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	NR	2E-9		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	0.823	8E-7	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	NR	6E-17		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	0.823	8E-14	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	NR	8E-25		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116728629	116728630	rs12225230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs12225230-G	0.823	8E-29	(EA)	0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1475	chr11	116732511	116732512	rs2075292	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs2075292-?	NR	1E-18		0.04665992	[0.036-0.057] unit decrease	Illumina [31978265] (imputed)	N
1475	chr11	116732511	116732512	rs2075292	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	11q23.3	NR	rs2075292-?	NR	6E-6		1.996645	[1.13-2.86] unit decrease	Illumina [32003504] (imputed)	N
1475	chr11	116732511	116732512	rs2075292	18193046	Kooner JS	2008-01-13	Nat Genet	Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides.	Triglycerides	1,005 European ancestry male individuals, 1,006 Indian Asian ancestry male individuals	6,827 European ancestry individuals, 2,528 Mexican ancestry individuals, 1,181 Indian Asian ancestry female individuals	11q23.3	LOC645044, APOA1, KIAA0999	rs2075292-G	0.24	5E-8		8.7	[5.76-11.64] % increase	Perlegen [up to 216774]	N
1475	chr11	116737301	116737302	rs139447106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q23.3	NR	rs139447106-T	0.044563	2E-11		0.030081	[0.021-0.039] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1475	chr11	116740481	116740482	rs188287950	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs188287950-?	NR	6E-37		0.307	[0.26-0.35] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1475	chr11	116741552	116741553	rs11216168	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11q23.3	NR	rs11216168-A	0.1471	4E-7		0.0185	[0.011-0.026] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1475	chr11	116742625	116742626	rs79849088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	SIK3	rs79849088-T	0.032444	3E-24		0.06474753	[0.052-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1475	chr11	116745483	116745484	rs9919599	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFRC	5,368 Icelandic ancestry individuals	NA	11q23.3		rs9919599-C	0.1363	3E-30		0.306721	[0.25-0.36] unit increase	Illumina [7506463] (imputed)	N
1475	chr11	116748313	116748314	rs681524	25060954	Wolber LE	2014-07-24	Hum Mol Genet	Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.	Hearing function	1,022 European ancestry individuals, 280 Carlantino (founder/genetic isolate) individuals, 1,097 Friuli Venezia Giulia (founder/genetic isolate) individuals, 804 Korcula (founder/genetic isolate) individuals, 497 Split (founder/genetic isolate) individuals, 421 Cilento (founder/genetic isolate) individuals, 470 Talana (founder/genetic isolate) individuals, 348 Silk Road individuals	NA	11q23.3	SIK3, LOC100129905, APOA1	rs681524-C	NR	4E-8	(PC2)	0.2439	unit decrease	Affymetrix, Illumina [> 2300000] (imputed)	N
1475	chr11	116748853	116748854	rs73023045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs73023045-G	NR	2E-13		0.0292	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116748853	116748854	rs73023045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs73023045-G	NR	2E-29		0.0448	[0.037-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116751978	116751978	rs57301539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs57301539-T,rs57301539-T	0.983409	4E-10		0.0979127	[0.067-0.129] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116751978	116751978	rs57301539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs57301539-T,rs57301539-T	0.983409	4E-10		0.0979127	[0.067-0.129] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116762027	116762028	rs12285074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.3		rs12285074-A	0.1012	5E-12		0.0161	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546251	1E-8		0.0484176	[0.032-0.065] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	3E-9		0.0506736	[0.034-0.067] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	6E-12		0.0609765	[0.044-0.078] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	2E-18		0.0783351	[0.061-0.096] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	8E-27		0.0926401	[0.076-0.11] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	4E-19		0.0794011	[0.062-0.097] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	4E-9		0.0524799	[0.035-0.07] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	4E-11		0.0591797	[0.042-0.077] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	6E-11		0.0587495	[0.041-0.076] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	2E-10		0.0563639	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	2E-14		0.0693494	[0.052-0.087] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	2E-10		0.0568778	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	9E-9		0.0514523	[0.034-0.069] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546315	1E-9		0.0544674	[0.037-0.072] unit increase	NR [11722792] (imputed)	N
1475	chr11	116762582	116762583	rs525302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs525302-C	0.0546301	5E-9		0.052653	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	3E-13		0.0289	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	8E-60		0.0629	[0.055-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	4E-45		0.0543	[0.047-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	4E-20		0.0354	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	1E-25		0.0404	[0.033-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116762828	116762829	rs75158858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs75158858-A	NR	3E-71		0.0721	[0.064-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1475	chr11	116764020	116764021	rs672058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs672058-T	0.766848	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1475	chr11	116764020	116764021	rs672058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q23.3	NR	rs672058-T	0.880458	2E-10		0.018163	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1475	chr11	116764020	116764021	rs672058	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q23.3	NR	rs672058-?		5E-12	(APOA4)	0.2925	[NR] unit increase	Illumina [NR]	N
1475	chr11	116768599	116768600	rs201462698	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q23.3	NR	rs201462698-C	0.0921	1E-6	(EA)	0.0571	[0.034-0.08] unit increase	Illumina [~ 11800000] (imputed)	N
1475	chr11	116772440	116772441	rs1076485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q23.3		rs1076485-T	NR	3E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1475	chr11	116772440	116772441	rs1076485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.3		rs1076485-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1475	chr11	116772440	116772441	rs1076485	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.3	Intergenic	rs1076485-T	0.1329	3E-11	(MTAG)	0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1475	chr11	116772916	116772917	rs141023293	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	11q23.3	SIK3, APOA1	rs141023293-A	0.0265	7E-7		1.09	[1.06-1.13]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1475	chr11	116780094	116780095	rs75920871	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	11q23.3	NR	rs75920871-T	0.1468	1E-8		0.0183	[0.012-0.025] unit decrease	Illumina [NR] (imputed)	N
1475	chr11	116781544	116781545	rs11216183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q23.3	SIK3	rs11216183-A	0.092055	9E-11		0.024873706	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1475	chr11	116781544	116781545	rs11216183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q23.3		rs11216183-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1475	chr11	116781544	116781545	rs11216183	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q23.3	NA	rs11216183-A	0.0923	3E-11		0.0226	[0.016-0.029] unit increase	NR [~ 27400000] (imputed)	N
1475	chr11	116782973	116782974	rs11216185	22306654	Feenstra B	2012-02-05	Nat Genet	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	11q23.3	NR	rs11216185-G	0.05	1E-7		1.57	[1.33-1.86]	Illumina [523420]	N
1475	chr11	116784375	116784376	rs7115583	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	11q23.3	SIK3	rs7115583-T	0.1506	4E-8		1.3223	[0.85-1.79] unit increase	Affymetrix [NR] (imputed)	N
1476	chr11	116791306	116791307	rs78692246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.3		rs78692246-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1476	chr11	116791306	116791307	rs78692246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q23.3		rs78692246-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1476	chr11	116793619	116793621	rs200856670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q23.3		rs200856670-T	NR	1E-16		0.0283	[0.022-0.035] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1476	chr11	116793619	116793621	rs200856670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q23.3	SIK3	rs200856670-T	0.056019	6E-15		0.03777564	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1476	chr11	116793619	116793621	rs200856670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q23.3	SIK3	rs200856670-T	0.056017	6E-18		0.0418129	[0.032-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1476	chr11	116801200	116801201	rs645258	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	11q23.3		rs645258-A	NR	7E-31		12.3998	mg/dl increase	NR [5712318]	N
1476	chr11	116805063	116805064	rs77204473	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q23.3	SIK3	rs77204473-G	0.0553	2E-9		0.0471667	[0.032-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1476	chr11	116805063	116805064	rs77204473	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q23.3	SIK3	rs77204473-G	0.0553	1E-11		0.0528139	[0.038-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1476	chr11	116807342	116807343	rs139961185	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs139961185-?	NR	1E-25		0.1063304	[0.086-0.126] unit increase	Illumina [31978265] (imputed)	N
1476	chr11	116807342	116807343	rs139961185	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs139961185-?	NR	5E-9		1.509341	[1-2.02] unit decrease	Illumina [31978362] (imputed)	N
1476	chr11	116807342	116807343	rs139961185	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs139961185-G	NR	3E-13		0.194	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1476	chr11	116807342	116807343	rs139961185	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs139961185-G	0.921	3E-13	(Hispanic)	0.195	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1476	chr11	116807342	116807343	rs139961185	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	11q23.3	SIK3	rs139961185-A	NR	7E-9		1.44	[1.27-1.63]	Illumina [1661241] (imputed)	N
1476	chr11	116807969	116807970	rs473172	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	11q23.3		rs473172-?	NR	4E-8		0.00758713	[0.0049-0.0103] unit increase	NR [NR]	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	9E-11		0.0566428	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	9E-11		0.0566428	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	2E-10		0.0563653	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	2E-10		0.0563653	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-17		0.0730156	[0.056-0.09] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-17		0.0730156	[0.056-0.09] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-11		0.0597624	[0.043-0.077] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-11		0.0597624	[0.043-0.077] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	5E-8		0.048294	[0.031-0.066] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	5E-8		0.048294	[0.031-0.066] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	5E-9		0.0491905	[0.033-0.066] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	5E-9		0.0491905	[0.033-0.066] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	1E-9		0.0529108	[0.036-0.07] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	1E-9		0.0529108	[0.036-0.07] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-10		0.0578885	[0.04-0.075] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-10		0.0578885	[0.04-0.075] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	2E-8		0.049711	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	2E-8		0.049711	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	8E-10		0.0521843	[0.036-0.069] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	8E-10		0.0521843	[0.036-0.069] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	1E-10		0.0538306	[0.037-0.07] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	1E-10		0.0538306	[0.037-0.07] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	9E-10		0.0536616	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	9E-10		0.0536616	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	8E-11		0.0573366	[0.04-0.075] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942747	8E-11		0.0573366	[0.04-0.075] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-8		0.0509345	[0.033-0.068] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-8		0.0509345	[0.033-0.068] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	6E-10		0.0545436	[0.037-0.072] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	6E-10		0.0545436	[0.037-0.072] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-8		0.0470222	[0.031-0.063] unit increase	NR [11722792] (imputed)	N
1476	chr11	116811702	116811702	rs544097327	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs544097327-TTTTG,rs544097327-TTTTG	0.942735	1E-8		0.0470222	[0.031-0.063] unit increase	NR [11722792] (imputed)	N
1476	chr11	116815681	116815681	rs571547192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q23.3	SIK3	rs571547192-CTT	0.0524	1E-9		0.04941878	[0.033-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1476	chr11	116817084	116817084	rs34661549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs34661549-T	0.983123	4E-8		0.0842832	[0.054-0.114] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116817084	116817084	rs34661549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs34661549-T	0.983123	2E-9		0.093319	[0.063-0.124] unit increase	NR [11722792] (imputed)	N
1476	chr11	116817084	116817084	rs34661549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs34661549-T	0.983123	4E-10		0.0984038	[0.068-0.129] unit increase	NR [11722792] (imputed)	N
1476	chr11	116817084	116817084	rs34661549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs34661549-T	0.983123	2E-10		0.100025	[0.069-0.131] unit increase	NR [11722792] (imputed)	N
1476	chr11	116829652	116829653	rs7120173	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11q23.3	KIAA0999	rs7120173-G	0.22	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1476	chr11	116830260	116830261	rs7120963	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	11q23.3		rs7120963-T	0.36	3E-14		5.46	[4.05-6.87] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1476	chr11	116831015	116831016	rs11216199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs11216199-T	0.064649	7E-25				Affymetrix, Illumina [19872809] (imputed)	N
1476	chr11	116835362	116835363	rs59283948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.3	SIK3	rs59283948-A	0.032614	1E-15		0.051042255	[0.039-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1476	chr11	116835601	116835601	rs142778341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs142778341-A,rs142778341-A	0.934709	1E-8		0.0481299	[0.032-0.065] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116835601	116835601	rs142778341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs142778341-A,rs142778341-A	0.934709	1E-8		0.0481299	[0.032-0.065] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116837716	116837717	rs148406912	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	11q23.3	NR	rs148406912-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
1476	chr11	116848856	116848857	rs509171	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Non-accommodative esotropia	826 European ancestry cases, 2,991 European ancestry controls	689 European ancestry cases, 1,448 European ancestry controls	11q23.3	SIK3	rs509171-T	0.23	6E-6		1.5	NR	Illumina [6470615] (imputed)	N
1476	chr11	116853122	116853123	rs3863304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	11q23.3		rs3863304-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1476	chr11	116853299	116853300	rs12804297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs12804297-A	NR	3E-10		0.0282	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1476	chr11	116872875	116872876	rs77585745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs77585745-C	NR	5E-11		0.059	[0.041-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1476	chr11	116872875	116872876	rs77585745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs77585745-C	NR	6E-11		0.0586	[0.041-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1476	chr11	116872875	116872876	rs77585745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs77585745-C	NR	5E-17		0.0787	[0.06-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1476	chr11	116879675	116879676	rs7931398	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q23.3	SIK3	rs7931398-C	0.259045	2E-9		0.06230869	[0.042-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
1476	chr11	116883776	116883777	rs61905706	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	11q23.3	LOC101929011	rs61905706-?	NR	3E-19		0.02543	[0.019-0.032] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1476	chr11	116884788	116884789	rs11216230	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	11q23.3	NR	rs11216230-?	NR	6E-15		1.974582	[1.48-2.47] unit increase	Illumina [31978362] (imputed)	N
1476	chr11	116884788	116884789	rs11216230	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs11216230-G	0.939	5E-9	(Hispanic)	0.157	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1476	chr11	116884788	116884789	rs11216230	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	HDL cholesterol	3,701 Mexican ancestry individuals	5,114 Mexican ancestry individuals, 903 Mexican ancestry individuals from 73 dyslipidemic families	11q23.3	SIK3	rs11216230-A	NR	3E-10		0.22	[NR] unit increase	Illumina [1661241] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-9		0.0614772	[0.041-0.082] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	6E-10		0.0646345	[0.044-0.085] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-9		0.0570863	[0.038-0.076] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-9		0.0627446	[0.042-0.083] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947743	5E-11		0.0662032	[0.047-0.086] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-13		0.0783687	[0.057-0.099] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	5E-16		0.0856099	[0.065-0.106] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947871	4E-8		0.0598179	[0.039-0.081] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	1E-17		0.0879588	[0.068-0.108] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	6E-13		0.0782297	[0.057-0.1] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-8		0.0576564	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-10		0.0606165	[0.042-0.079] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	1E-8		0.0591942	[0.039-0.08] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-19		0.0869021	[0.068-0.106] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	7E-13		0.0688842	[0.05-0.088] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-8		0.0589155	[0.038-0.079] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	4E-8		0.0573072	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-15		0.0755703	[0.057-0.094] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-9		0.0561047	[0.038-0.075] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	4E-9		0.0614737	[0.041-0.082] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	2E-9		0.0628133	[0.042-0.083] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	9E-10		0.0646505	[0.044-0.085] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	1E-8		0.0547752	[0.036-0.074] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	4E-8		0.0576048	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	4E-20		0.0893825	[0.07-0.108] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	5E-12		0.071295	[0.051-0.091] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-8		0.0530917	[0.034-0.072] unit decrease	NR [11722792] (imputed)	N
1476	chr11	116890969	116890970	rs563566473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs563566473-C	0.947733	3E-8		0.0578151	[0.037-0.078] unit increase	NR [11722792] (imputed)	N
1476	chr11	116902638	116902639	rs79357714	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	SIK3	rs79357714-A	0.954276	2E-9		0.0288102	[0.019-0.038] unit increase	Affymetrix [NR] (imputed)	N
1476	chr11	116908282	116908283	rs7115242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs7115242-A	NR	1E-10		0.131342	[0.091-0.171] unit decrease	Affymetrix [87696910] (imputed)	N
1476	chr11	116908282	116908283	rs7115242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs7115242-A	NR	3E-10		0.0968812	[0.067-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
1476	chr11	116908282	116908283	rs7115242	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	11q23.3	SIK3	rs7115242-T	0.2796	9E-14	(TG)	0.05987	NR unit increase	Affymetrix [305158]	N
1476	chr11	116908282	116908283	rs7115242	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	11q23.3	SIK3	rs7115242-T	0.1027	7E-19		7.777633	[6.06-9.5] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1476	chr11	116908282	116908283	rs7115242	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q23.3	NR	rs7115242-?	NR	1E-9				Affymetrix [NR]	N
1476	chr11	116908282	116908283	rs7115242	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q23.3	NR	rs7115242-?	NR	1E-10				Affymetrix [NR]	N
1476	chr11	116915741	116915742	rs2000614	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q23.3	NR	rs2000614-?		5E-10	(APOA4)	0.2547	[NR] unit increase	Illumina [NR]	N
1476	chr11	116916059	116916060	rs144018203	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (2df)	73,908 European ancestry individuals	7,284 European ancestry individuals	11q23.3	SIK3	rs144018203-C	0.0108	2E-9				Affymetrix [7953600] (imputed)	N
1476	chr11	116916059	116916060	rs144018203	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (2df)	67,544 European ancestry individuals	7,284 European ancestry individuals	11q23.3	SIK3	rs144018203-C	0.0107	1E-16				Affymetrix [7954107] (imputed)	N
1476	chr11	116916079	116916080	rs56121615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs56121615-A	NR	5E-19		0.0477	[0.037-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1477	chr11	116917243	116917244	rs10750100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs10750100-T	NR	3E-10		0.0910482	[0.063-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1477	chr11	116917884	116917885	rs73576603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs73576603-A	NR	1E-9		0.0608	[0.041-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1477	chr11	116921396	116921397	rs1815787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q23.3		rs1815787-C	NR	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1477	chr11	116921396	116921397	rs1815787	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	11q23.3	NR	rs1815787-T	0.1173	7E-6		0.020935446	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1477	chr11	116922853	116922854	rs78442878	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	11q23.3		rs78442878-G	NR	2E-13		7.0546007	mg/dl increase	NR [5712318]	N
1477	chr11	116928513	116928514	rs4938330	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	SIK3, AP000936.1, AP000936.2, RNY4P6, AP000936.4	rs4938330-G	0.222668	1E-16	(EA, Proprotein convertase subtilisin/kexin type 7)	0.4282	[0.33-0.53] unit decrease	Affymetrix [509946]	N
1477	chr11	116936870	116936871	rs56751865	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	11q23.3	NR	rs56751865-?	NR	3E-6	(Chinese)	0.1026	[0.06-0.146] unit decrease	Illumina [at least 7383741] (imputed)	N
1477	chr11	116940448	116940449	rs12280210	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	11q23.3	NR	rs12280210-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1477	chr11	116964436	116964437	rs59097294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs59097294-T	0.81851	4E-39		0.0646087	[0.055-0.074] unit decrease	NR [11722792] (imputed)	N
1477	chr11	116964436	116964437	rs59097294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs59097294-T	0.81851	2E-40		0.0655942	[0.056-0.075] unit decrease	NR [11722792] (imputed)	N
1477	chr11	116973246	116973247	rs76942203	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q23.3	NA	rs76942203-A	0.0587	9E-11		0.0263	[0.018-0.034] unit increase	NR [~ 27400000] (imputed)	N
1477	chr11	116973928	116973929	rs12269901	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	11q23.3	NR	rs12269901-C	0.290399365247289	2E-6				NR [9276018] (imputed)	N
1477	chr11	116973928	116973929	rs12269901	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	11q23.3	intergenic	rs12269901-C	0.68	2E-6		0.069	[0.041-0.097] unit increase	Affymetrix [~ 2740000] (imputed)	N
1477	chr11	116979362	116979363	rs12416941	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs12416941-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1477	chr11	116979910	116979911	rs12271161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	11q23.3		rs12271161-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1477	chr11	116980785	116980786	rs61903427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q23.3		rs61903427-C	NR	4E-9		0.0214	[0.014-0.028] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1477	chr11	116989710	116989712	rs11454131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q23.3		rs11454131-C	NR	7E-9		0.0236	[0.016-0.032] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1477	chr11	116990506	116990507	rs116978226	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	SIK3	rs116978226-C	0.9669	2E-36		0.0678207	[0.057-0.078] unit decrease	Affymetrix [NR] (imputed)	N
1477	chr11	116990760	116990760	rs111905938	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs111905938-?	NR	2E-34		0.102	[0.086-0.118] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1477	chr11	116996760	116996761	rs7941140	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	Intergenic	rs7941140-T	0.909	9E-7	(AA)	0.027	unit increase	Illumina [NR] (imputed)	N
1477	chr11	116996760	116996761	rs7941140	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	Intergenic	rs7941140-T	0.909	2E-6	(AA)	0.133	NR unit increase	Illumina [NR] (imputed)	N
1477	chr11	116999058	116999059	rs4516002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPST2	5,350 Icelandic ancestry individuals	NA	11q23.3		rs4516002-A	0.1589	2E-14		0.18812	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
1477	chr11	116999224	116999225	rs9326248	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	RP11-109L13.1, TAGLN, PCSK7, PAFAH1B2, SIDT2, RP11-109L13.5, AP000892.6	rs9326248-T	0.2386935	2E-105	(Proprotein convertase subtilisin/kexin type 7)	0.9929	[0.91-1.07] unit decrease	Affymetrix [509946]	N
1477	chr11	117002402	117002403	rs6589598	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs6589598-G	0.77765625	5E-335	(PCSK7, 4459_68_2)	1.043182	[1-1.09] unit increase	Illumina [> 1000000] (imputed)	N
1477	chr11	117002402	117002403	rs6589598	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs6589598-G	0.77765625	3E-13	(CASC4, 8838_10_3)	0.22286546	[0.16-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1477	chr11	117002402	117002403	rs6589598	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs6589598-G	0.77765625	2E-15	(TFRC, 8795_48_3)	0.22989437	[0.17-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1477	chr11	117002402	117002403	rs6589598	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs6589598-G	0.77765625	2E-10	(POMC, 2558_51_3)	0.18534032	[0.13-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1477	chr11	117003748	117003749	rs4938344	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	11q23.3	NR	rs4938344-?	NR	7E-19	(Proprotein convertase subtilisin/kexin type 7)			Illumina [514227]	N
1477	chr11	117008345	117008345	rs3216785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q23.3		rs3216785-GT	NR	6E-10		0.0228	[0.016-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1477	chr11	117010757	117010758	rs2622935	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASC4	5,364 Icelandic ancestry individuals	NA	11q23.3		rs2622935-A	0.2241	3E-16		0.184152	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
1477	chr11	117014161	117014161	rs201496069	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs201496069-A	0.147186	4E-8		0.0331006	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
1477	chr11	117015515	117015516	rs12419272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q23.3		rs12419272-G	NR	2E-9		0.1069	[0.072-0.142] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1477	chr11	117018763	117018764	rs539030095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.3	PAFAH1B2	rs539030095-G	0.00161199999999995	6E-14		0.2280794	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1477	chr11	117018763	117018764	rs539030095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.3	PAFAH1B2	rs539030095-G	0.00161999999999995	5E-9		0.1786344	[0.12-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1477	chr11	117023486	117023487	rs7128382	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q23.3	PAFAH1B2	rs7128382-A	0.2123	4E-11		0.2688	[0.19-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
1477	chr11	117024480	117024481	rs7940310	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	11q23.3	PAFAH1B2	rs7940310-?	NR	7E-9	(Soluble transferrin receptor)			Illumina [up to 10879115] (imputed)	N
1477	chr11	117032958	117032959	rs12281009	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q23.3	PAFAH1B2	rs12281009-A	0.942445	1E-9		0.0178672	[0.012-0.024] unit decrease	Affymetrix [12370749]	N
1477	chr11	117032958	117032959	rs12281009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.3		rs12281009-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1477	chr11	117037360	117037361	rs7112513	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	11q23.3		rs7112513-A	NR	4E-10		0.0909523	[0.062-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1477	chr11	117037360	117037361	rs7112513	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q23.3	PAFAH1B2	rs7112513-?	0.13	6E-9	(Soluble transferrin receptor)			Illumina [496032]	N
1477	chr11	117042407	117042408	rs186808413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs186808413-T	NR	1E-80		0.2196	[0.2-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1477	chr11	117042407	117042408	rs186808413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs186808413-T	NR	5E-81		0.2302	[0.21-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1477	chr11	117042407	117042408	rs186808413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs186808413-T	NR	1E-75		0.2237	[0.2-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1477	chr11	117042407	117042408	rs186808413	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	11q23.3	PAFAH1B2	rs186808413-?	0.011	2E-10	(conditioned on rs964184, rs3135506, rs2266788, rs76353203, rs14721066, rs140621530, EA)	3.0	mg/dl increase	Illumina [247644]	N
1477	chr11	117045334	117045335	rs7925256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.3		rs7925256-T	0.0907	4E-10	(conditional-joint)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1477	chr11	117046196	117046197	rs4938353	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q23.3	NR	rs4938353-?		2E-14	(APOA4)	0.2934	[NR] unit increase	Illumina [NR]	N
1478	chr11	117052531	117052532	rs61729990	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	SIDT2	rs61729990-C	0.982112	1E-13		0.0559706	[0.041-0.071] unit increase	Affymetrix [NR] (imputed)	N
1478	chr11	117053958	117053959	rs530885291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q23.3	SIDT2	rs530885291-A	0.00172600000000001	2E-13		0.21766323	[0.16-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1478	chr11	117053958	117053959	rs530885291	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	11q23.3	NR	rs530885291-A	NR	1E-19		1.0283372	[0.81-1.25] mg/dl increase	Illumina [24111857] (imputed)	N
1478	chr11	117061466	117061467	rs17120419	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs17120419-T	NR	9E-12		0.0406	[0.029-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117062369	117062370	rs1242229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs1242229-C	NR	7E-204		0.1192	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117062369	117062370	rs1242229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs1242229-C	NR	8E-30		0.0444	[0.037-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117062369	117062370	rs1242229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs1242229-C	NR	3E-20		0.0361	[0.028-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117062369	117062370	rs1242229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs1242229-C	NR	4E-14		0.031	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117062369	117062370	rs1242229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs1242229-C	NR	8E-21		0.0368	[0.029-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117070360	117070361	rs74949440	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with more than 10 gray radiotherapy	131 European ancestry cases, 493 European ancestry controls	NA	11q23.3	TAGLN	rs74949440-T	0.02	6E-8		2.59	[1.62-4.16]	Affymetrix, Illumina [16958466] (imputed)	N
1478	chr11	117070547	117070550	rs10577826	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	11q23.3	NR	rs10577826-?	NR	4E-31	(PCSK7)			Illumina [~ 4000000] (imputed)	N
1478	chr11	117071969	117071970	rs494356	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	11q23.3	TAGLN	rs494356-T	0.132695	1E-12		0.08398768	[0.061-0.107] unit increase	Affymetrix [7288503] (imputed)	N
1478	chr11	117074108	117074109	rs12970	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q23.3	TAGLN	rs12970-G	0.939155	8E-9		0.0251616	[0.017-0.034] unit increase	Affymetrix [NR] (imputed)	N
1478	chr11	117075565	117075566	rs508487	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	11q23.3		rs508487-T	NR	4E-30		14.800047	mg/dl increase	NR [5712318]	N
1478	chr11	117075565	117075566	rs508487	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	11q23.3	NR	rs508487-?	NR	3E-10		0.05842766	[0.04-0.077] unit increase	Illumina [31978265] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	NR	5E-91		0.19	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	0.945	9E-85	(EA)	0.193	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	0.935	6E-8	(Hispanic)	0.166	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	0.87	4E-13	(East Asian)	0.174	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	NR	3E-10		0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	0.945	6E-11	(EA)	0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	NR	1E-16		0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs508487-C	0.945	2E-13	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117075565	117075566	rs508487	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	Triglyceride levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	11q23.3	PCSK7	rs508487-T	0.116	8E-9		0.055	[0.027-0.113] unit increase	Illumina [1294241]	N
1478	chr11	117075565	117075566	rs508487	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	11q23.3	PCSK7	rs508487-T	0.04	2E-10	(TRIG)	0.235	[0.16-0.31] mmol/l increase	Illumina [NR] (imputed)	N
1478	chr11	117076971	117076972	rs45574931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs45574931-A	NR	2E-20		0.0464	[0.037-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117076971	117076972	rs45574931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs45574931-A	NR	6E-20		0.0457	[0.036-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117076971	117076972	rs45574931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs45574931-A	NR	4E-12		0.0346	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117076971	117076972	rs45574931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs45574931-A	NR	8E-11		0.0326	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117076971	117076972	rs45574931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs45574931-A	NR	1E-22		0.0513	[0.041-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-21		0.205271	[0.16-0.25] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-19		0.187239	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs555766713-C	0.99074	5E-10		0.13355	[0.092-0.176] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990568	2E-41		0.27748	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-9		0.126912	[0.085-0.168] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-23		0.210446	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-47		0.300316	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-17		0.175401	[0.13-0.22] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-44		0.293936	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990565	2E-14		0.16745	[0.12-0.21] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-39		0.269926	[0.23-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-21		0.199365	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-28		0.23396	[0.19-0.28] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-43		0.287641	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	9E-36		0.263946	[0.22-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-26		0.224647	[0.18-0.27] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-40		0.281274	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-32		0.25203	[0.21-0.29] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-14		0.161519	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-21		0.203822	[0.16-0.25] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	9E-34		0.255235	[0.21-0.3] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-9		0.127933	[0.086-0.17] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-34		0.256383	[0.21-0.3] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	7E-40		0.278312	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-12		0.149919	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-15		0.168123	[0.13-0.21] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-19		0.189803	[0.15-0.23] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-36		0.264633	[0.22-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-43		0.290357	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-38		0.255749	[0.22-0.29] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-29		0.240825	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-21		0.206007	[0.16-0.25] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-38		0.273086	[0.23-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-46		0.275272	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-43		0.29049	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-33		0.257339	[0.22-0.3] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	3E-49		0.299875	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	6E-16		0.170345	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	2E-30		0.240872	[0.2-0.28] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	9E-19		0.186158	[0.14-0.23] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	4E-38		0.270871	[0.23-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-19		0.195761	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-20		0.196927	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs555766713-C	0.99074	5E-14		0.167219	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990568	5E-23		0.19889	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-18		0.181781	[0.14-0.22] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-26		0.2336	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-11		0.146981	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-46		0.297968	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990565	2E-49		0.313983	[0.27-0.36] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-14		0.160448	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990878	7E-16		0.180573	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-9		0.128237	[0.085-0.171] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-12		0.15251	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-43		0.290362	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	5E-37		0.25055	[0.21-0.29] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-19		0.197156	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-16		0.178721	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-42		0.287903	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-45		0.272264	[0.23-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-46		0.300111	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-30		0.246663	[0.2-0.29] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	3E-19		0.193754	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-40		0.261542	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990568	1E-24		0.19933	[0.16-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-22		0.20187	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-29		0.23697	[0.2-0.28] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	7E-23		0.204617	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-12		0.146865	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-42		0.284292	[0.24-0.33] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-45		0.274198	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990565	2E-14		0.166058	[0.12-0.21] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-36		0.262054	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-25		0.213317	[0.17-0.25] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-42		0.288329	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-36		0.257409	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-11		0.148806	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-12		0.15355	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	5E-40		0.280369	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-46		0.27452	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-48		0.307678	[0.27-0.35] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-26		0.229878	[0.19-0.27] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-37		0.247137	[0.21-0.29] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990573	8E-9		0.119304	[0.079-0.16] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-43		0.290642	[0.25-0.33] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-36		0.249307	[0.21-0.29] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	7E-30		0.244887	[0.2-0.29] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-17		0.187383	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-39		0.278149	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	5E-46		0.27335	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-44		0.29431	[0.25-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-23		0.215916	[0.17-0.26] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-26		0.217632	[0.18-0.26] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs555766713-C	0.99074	8E-20		0.192791	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-27		0.236629	[0.19-0.28] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-24		0.208574	[0.17-0.25] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	5E-28		0.239517	[0.2-0.28] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-40		0.282814	[0.24-0.32] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-29		0.235061	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-18		0.1873	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	6E-36		0.270009	[0.23-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-43		0.270807	[0.23-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-23		0.219163	[0.18-0.26] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-34		0.263928	[0.22-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-48		0.28257	[0.24-0.32] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-46		0.301968	[0.26-0.34] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	7E-17		0.182964	[0.14-0.23] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-41		0.263494	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-24		0.208077	[0.17-0.25] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q23.3		rs555766713-C	0.99074	5E-18		0.183102	[0.14-0.22] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-15		0.173027	[0.13-0.22] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-21		0.194153	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-50		0.310017	[0.27-0.35] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	1E-35		0.256961	[0.22-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	8E-22		0.204422	[0.16-0.25] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-39		0.28097	[0.24-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-42		0.26987	[0.23-0.31] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	5E-19		0.195309	[0.15-0.24] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	2E-37		0.274018	[0.23-0.32] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	4E-48		0.281523	[0.24-0.32] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-49		0.311559	[0.27-0.35] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	3E-39		0.267988	[0.23-0.31] unit increase	NR [11722792] (imputed)	N
1478	chr11	117079546	117079547	rs555766713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs555766713-C	0.990566	9E-43		0.266117	[0.23-0.3] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117080639	117080640	rs11216315	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	11q23.3	PCSK7	rs11216315-G	0.13253333333333334	7E-6		1.1667	[0.66-1.68] unit increase	Affymetrix [NR] (imputed)	N
1478	chr11	117084536	117084537	rs12418744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.3		rs12418744-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1478	chr11	117085209	117085210	rs77683187	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q23.3	NR	rs77683187-C	0.0608	2E-6	(EA)	0.0613	[0.036-0.087] unit increase	Illumina [~ 11800000] (imputed)	N
1478	chr11	117085260	117085261	rs76604009	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs76604009-C	0.964407	2E-9		0.0667838	[0.045-0.089] unit decrease	NR [11722792] (imputed)	N
1478	chr11	117085269	117085270	rs236911	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs236911-A	NR	2E-44		0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117085269	117085270	rs236911	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs236911-A	0.857	1E-34	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117085269	117085270	rs236911	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs236911-A	0.485	1E-9	(East Asian)	0.089	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117085269	117085270	rs236911	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs236911-A	NR	3E-6		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117085269	117085270	rs236911	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q23.3	NR	rs236911-A	NR	4E-6		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1478	chr11	117089204	117089205	rs142953140	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs142953140-?	NR	7E-22		1.253	[1-1.51] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1478	chr11	117089204	117089205	rs142953140	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	11q23.3		rs142953140-?	NR	2E-37		1.883	[1.59-2.17] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1478	chr11	117089204	117089205	rs142953140	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	11q23.3	PCSK7	rs142953140-?	NR	2E-9	(AA)	0.3	unit decrease	Illumina [247644]	N
1478	chr11	117089204	117089205	rs142953140	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	11q23.3	PCSK7	rs142953140-?	0.002	5E-20	(conditioned on rs964184, rs3135506, rs2266788, rs76353203, rs14721066, rs140621530, AA)	17.0	mg/dl increase	Illumina [247644]	N
1478	chr11	117089204	117089205	rs142953140	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	11q23.3	PCSK7	rs142953140-?	0.002	3E-20	(AA)	17.0	mg/dl increase	Illumina [247644]	N
1478	chr11	117091608	117091609	rs236918	21149283	Oexle K	2010-12-10	Hum Mol Genet	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	11q23.3	PCSK7	rs236918-C	NR	1E-27	(sTfR)	0.038	[0.03-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1478	chr11	117093716	117093717	rs73008592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs73008592-C	NR	2E-11		0.0266	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117093716	117093717	rs73008592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs73008592-C	NR	3E-26		0.0421	[0.034-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117093763	117093764	rs3830008	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCSK7	5,355 Icelandic ancestry individuals	NA	11q23.3		rs3830008-C	0.1726	2E-40		0.319786	[0.27-0.37] unit decrease	Illumina [7506463] (imputed)	N
1478	chr11	117095282	117095283	rs59781045	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	11q23.3	ZPR1	rs59781045-?	NR	1E-15		0.01562	[0.012-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1478	chr11	117095282	117095283	rs59781045	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	11q23.3	ZPR1	rs59781045-?	NR	2E-17		0.01594	[0.012-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1478	chr11	117097221	117097222	rs7926958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q23.3		rs7926958-G	NR	1E-9		0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	2E-9		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	3E-31		0.0382	[0.032-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	1E-23		0.033	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	7E-11		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	5E-15		0.0258	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117100028	117100029	rs4938362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs4938362-A	NR	7E-32		0.0404	[0.034-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117101119	117101120	rs36066272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs36066272-C	NR	5E-12		0.0558	[0.04-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117101310	117101311	rs74988348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs74988348-T	NR	2E-25		0.0726	[0.059-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117101310	117101311	rs74988348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs74988348-T	NR	2E-57		0.1115	[0.098-0.125] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117106068	117106069	rs185433085	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11q23.3	NR	rs185433085-C	NR	7E-6	(GEE model)	0.8837	[0.5-1.27] unit decrease	NR [NR] (imputed)	N
1478	chr11	117106299	117106300	rs183230709	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	11q23.3	NR	rs183230709-?	NR	9E-15	(conditional on round 4)	0.09348012	[0.07-0.117] unit increase novel	Illumina [6108953] (imputed)	N
1478	chr11	117110739	117110740	rs650585	34002480	Damotte V	2021-05-18	Alzheimers Dement	Plasma amyloid ? levels are driven by genetic variants near APOE, BACE1, APP, PSEN2: A genome-wide association study in over 12,000 non-demented participants.	Plasma amyloid beta peptide concentrations (ABx-40)	12,369 European ancestry non-demented individuals	NA	11q23.3	RNF214/BACE1	rs650585-T	0.413	3E-8		0.073	unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1478	chr11	117118036	117118037	rs186041214	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	11q23.3	RNF214	rs186041214-T	NR	5E-6		0.74930817	[0.36-1.14] unit decrease	Illumina [> 6200000] (imputed)	N
1478	chr11	117126492	117126493	rs112357006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs112357006-A	NR	1E-12		0.0425	[0.031-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117139195	117139196	rs138098858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs138098858-C	0.990515	3E-8		0.116773	[0.076-0.158] unit increase	NR [11722792] (imputed)	N
1478	chr11	117139195	117139196	rs138098858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs138098858-C	0.990515	1E-8		0.120903	[0.079-0.163] unit increase	NR [11722792] (imputed)	N
1478	chr11	117156551	117156552	rs7083	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	RNF214, PCSK7, BACE1, SCARNA11, CMB9-94B1.2, BACE1-AS	rs7083-T	0.4116466	6E-14	(EA, Proprotein convertase subtilisin/kexin type 7)	0.332	[0.25-0.42] unit increase	Affymetrix [509946]	N
1478	chr11	117156892	117156893	rs1047964	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	RNF214	rs1047964-G	0.948064	2E-24		0.0435108	[0.035-0.052] unit decrease	Affymetrix [NR] (imputed)	N
1478	chr11	117156892	117156893	rs1047964	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	RNF214	rs1047964-G	0.948111	6E-30		0.0499506	[0.041-0.059] unit decrease	Affymetrix [NR] (imputed)	N
1478	chr11	117156892	117156893	rs1047964	21779381	Schurks M	2011-07-14	PLoS One	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	11q23.3	BACE1	rs1047964-?	NR	8E-7	(any migraine - CVD death)	4.67	[2.53-8.62]	Illumina [339596]	N
1478	chr11	117162761	117162762	rs28989504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs28989504-C	NR	2E-16		0.0446	[0.034-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117172819	117172820	rs680210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q23.3	BACE1	rs680210-C	0.621209	8E-18		0.020256883	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1478	chr11	117172819	117172820	rs680210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs680210-T	0.365985	6E-33				Affymetrix, Illumina [17210439] (imputed)	N
1478	chr11	117172819	117172820	rs680210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q23.3	NR	rs680210-T	0.378671	9E-35		0.024456	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1478	chr11	117175657	117175658	rs116987336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs116987336-A	NR	1E-140		0.1921	[0.18-0.21] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117175657	117175658	rs116987336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs116987336-A	NR	2E-16		0.0627	[0.048-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117175657	117175658	rs116987336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q23.3	NR	rs116987336-A	NR	3E-14		0.058	[0.043-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117175657	117175658	rs116987336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs116987336-A	NR	5E-23		0.0788	[0.063-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1478	chr11	117175657	117175658	rs116987336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q23.3	NR	rs116987336-A	NR	2E-17		0.0649	[0.05-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1478	chr11	117177382	117177383	rs142093337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q23.3		rs142093337-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1479	chr11	117192382	117192383	rs516742	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	11q23.3	CEP164, BACE1	rs516742-G	0.15	9E-6	(African American)	0.25	0.14-0.35 unit decrease	Illumina [NR] (imputed)	N
1479	chr11	117201164	117201165	rs515756	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	CEP164	rs515756-T	0.718667	7E-10		0.01347	[0.0092-0.0178] unit decrease	Affymetrix [NR] (imputed)	N
1479	chr11	117218459	117218460	rs1261744	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q23.3	CEP164	rs1261744-T		9E-6	(Latino)	0.648	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1479	chr11	117218459	117218460	rs1261744	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q23.3	CEP164	rs1261744-T		2E-6	(EA)	0.237	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1479	chr11	117218459	117218460	rs1261744	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q23.3	CEP164	rs1261744-T		1E-9		0.275	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1479	chr11	117218459	117218460	rs1261744	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.3	CEP164	rs1261744-T		7E-17		0.264	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1479	chr11	117220428	117220429	rs192489212	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	11q23.3	NR	rs192489212-C	0.00173721	1E-9		0.97264946	[0.66-1.28] mg/dl increase	Illumina [24111857] (imputed)	N
1479	chr11	117246565	117246566	rs112933729	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs112933729-A	NR	7E-10		0.0381	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr11	117248282	117248283	rs117619191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs117619191-C	NR	2E-24		0.0855	[0.069-0.102] unit increase	Affymetrix [9000000] (imputed)	N
1479	chr11	117254121	117254122	rs12797557	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q23.3	CEP164	rs12797557-A	0.3801	1E-9		0.177	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1479	chr11	117261487	117261488	rs897837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs897837-G	NR	2E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr11	117261487	117261488	rs897837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs897837-G	NR	1E-10		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1479	chr11	117266311	117266312	rs2305830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs2305830-G	NR	3E-11		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr11	117266311	117266312	rs2305830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q23.3	NR	rs2305830-G	NR	4E-16		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1479	chr11	117267883	117267884	rs573455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q23.3		rs573455-G	NR	9E-19		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q23.3	CEP164	rs573455-G	0.53432	4E-9		0.01302665	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs573455-G	0.508207	6E-10				Affymetrix, Illumina [24653286] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q23.3	NR	rs573455-G	0.535068	2E-11		0.012339	[0.0087-0.016] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs573455-G	0.509694	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q23.3	NR	rs573455-G	0.534842	1E-12		0.013106	[0.0095-0.0167] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1479	chr11	117267883	117267884	rs573455	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	11q23.3	CEP164	rs573455-A		7E-11		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1479	chr11	117267883	117267884	rs573455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.3		rs573455-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1479	chr11	117267883	117267884	rs573455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q23.3		rs573455-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1479	chr11	117267883	117267884	rs573455	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q23.3	CEP164	rs573455-G	0.4751	2E-25		0.2518	[0.2-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1479	chr11	117283675	117283676	rs8258	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q23.3	CEP164	rs8258-T	0.38	3E-13		0.236	[0.18-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1479	chr11	117301817	117301818	rs4356265	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	11q23.3		rs4356265-T	0.11	1E-6		2.75	[1.83-4.15]	Illumina [7989272] (imputed)	N
1479	chr11	117301817	117301818	rs4356265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	11q23.3	NR	rs4356265-T	NR	1E-11		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1480	chr11	117368181	117368182	rs73008413	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs73008413-T	0.0331	1E-11	(NME8)	0.04443	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr11	117375414	117375415	rs200392536	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs200392536-?	NR	2E-8	(right putamen)			NR [9227495] (imputed)	N
1480	chr11	117375414	117375415	rs200392536	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs200392536-?	NR	2E-10	(left putamen)			NR [9227495] (imputed)	N
1480	chr11	117383214	117383215	rs35200015	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	11q23.3	NR	rs35200015-A	0.1929	4E-17		8.408	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1480	chr11	117388931	117388932	rs11216435	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	11q23.3	POU3F3	rs11216435-?		1E-9				NR [7428630] (imputed)	N
1480	chr11	117388931	117388932	rs11216435	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	11q23.3	ACKR3	rs11216435-?		5E-9				NR [7428630] (imputed)	N
1480	chr11	117388931	117388932	rs11216435	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q23.3	CEP164	rs11216435-?	NR	3E-7	(fructose; glucose; galactose)	0.2358491	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1480	chr11	117388931	117388932	rs11216435	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	11q23.3	DSCAML1	rs11216435-T	0.32	3E-6	(AA)	4.41	[2.55-6.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr11	117403234	117403235	rs3741280	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs3741280-?	NR	1E-8	(right putamen)			NR [9227495] (imputed)	N
1480	chr11	117406110	117406111	rs11216440	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs11216440-?	NR	8E-12	(left putamen)			NR [9227495] (imputed)	N
1480	chr11	117406738	117406739	rs688968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs688968-?	NR	6E-13	(right putamen)			NR [9227495] (imputed)	N
1480	chr11	117406738	117406739	rs688968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs688968-?	NR	2E-16	(left putamen)			NR [9227495] (imputed)	N
1480	chr11	117409883	117409884	rs3016797	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs3016797-?	NR	8E-12	(left putamen)			NR [9227495] (imputed)	N
1480	chr11	117409883	117409884	rs3016797	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs3016797-?	NR	1E-9	(right putamen)			NR [9227495] (imputed)	N
1480	chr11	117421798	117421799	rs597583	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	11q23.3	DSCAML1	rs597583-?	NR	4E-7		36.894	[22.69-51.10] mm3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1480	chr11	117429727	117429728	rs685425	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	11q23.3	ISL1	rs685425-?		1E-9				NR [7428630] (imputed)	N
1481	chr11	117447484	117447485	rs185767007	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	11q23.3	NR	rs185767007-T	0.009399	4E-6		0.726	[0.42-1.03] unit decrease	Illumina [10677593] (imputed)	N
1481	chr11	117499128	117499129	rs576907609	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	DSCAML1	rs576907609-A	0.003	2E-14		0.3111	[0.23-0.39] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1481	chr11	117529894	117529895	rs74498740	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11q23.3	NR	rs74498740-C	NR	5E-7	(GEE model)	1.228	[0.75-1.71] unit increase	NR [NR] (imputed)	N
1481	chr11	117531730	117531731	rs10892151	19074352	Pollin TI	2008-12-17	Science	A null mutation in human APOC3 confers a favorable plasma lipid profile and apparent cardioprotection.	Triglycerides	809 Old Order Amish individuals	698 Old Order Amish individuals	11q23.3	APOA1, APOC3, APOA4, APOA5, DSCAML1	rs10892151-A	0.028	3E-29				Affymetrix [381934]	N
1481	chr11	117537131	117537132	rs17121057	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	11q23.3	NR	rs17121057-?	NR	2E-6		0.0291	[0.017-0.041] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1481	chr11	117546481	117546482	rs12787909	25575512	Lu W	2015-01-09	Hum Mol Genet	Evidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.	Lipoprotein (a) - cholesterol levels	1,376 Old Order Amish individuals	NA	11q23.3	DSCAML1, APOC3	rs12787909-?	NR	5E-9				Affymetrix [~ 2500000] (imputed)	N
1482	chr11	117643263	117643264	rs145556679	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Very low density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	DSCAML1	rs145556679-C	0.013	3E-11	(Mylopotamos)	1.131	[0.80-1.46] unit decrease	Illumina [at least 13541454] (imputed)	N
1482	chr11	117643263	117643264	rs145556679	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Triglyceride levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	11q23.3	DSCAML1	rs145556679-C	0.013	3E-11	(Mylopotamos)	1.134	[0.80-1.47] unit decrease	Illumina [at least 13541454] (imputed)	N
1482	chr11	117649037	117649038	rs13377577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs13377577-G	0.01742	3E-10	(HBD)	5.075	NR unit increase	Illumina [1671387] (imputed)	N
1482	chr11	117649037	117649038	rs13377577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q23.3	NR	rs13377577-G	0.01742	1E-8	(HBG1)	14.7	NR unit increase	Illumina [1671387] (imputed)	N
1482	chr11	117650875	117650876	rs139934868	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	11q23.3	DSCAML1, CEP164, FXYD2, FXYD6-FXYD2, FXYD6	rs139934868-G	0.06	1E-7		1.53	[1-2.06] unit increase	Illumina [8437147] (imputed)	N
1482	chr11	117656773	117656774	rs715315	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q23.3		rs715315-C	0.5278	5E-8		0.037049	[0.024-0.05] unit decrease	Affymetrix [15580782] (imputed)	N
1482	chr11	117656773	117656774	rs715315	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	11q23.3	NR	rs715315-T	0.4941	6E-12		0.0486	[0.035-0.063] unit increase	Illumina [~ 10600000] (imputed)	N
1482	chr11	117657678	117657679	rs7122817	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q23.3	DSCAML1	rs7122817-A	0.5072	6E-14		7.514	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1482	chr11	117670281	117670282	rs7943887	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q23.3	NR	rs7943887-G		2E-13		0.08	[0.06-0.1] unit increase	NR [NR]	N
1482	chr11	117671090	117671091	rs7947524	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q23.3	APOC3, SIK3, PAFAH1B2, SIDT2, TAGLN, PCSK7, DSCAML1, FXYD2, KMT2A, PHLDB1, TREH, DDX6, CXCR5, MFRP, RNF26, USP2, THY1	rs7947524-?		3E-34				Affymetrix, Illumina [NR] (imputed)	N
1482	chr11	117671488	117671489	rs3819132	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	11q23.3	NR	rs3819132-?	NR	3E-7		0.10451	[0.064-0.145] unit decrease	NR [13958389] (imputed)	N
1482	chr11	117671640	117671641	rs2298647	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	11q23.3	NR	rs2298647-?	NR	2E-7		0.092023	[0.058-0.126] unit increase	NR [13958389] (imputed)	N
1482	chr11	117672560	117672561	rs10892173	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11q23.3	DSCAML1, FXYD6, FXYD2	rs10892173-?	NR	1E-11		1.051	[1.036-1.066]	Illumina [13762925] (imputed)	N
1482	chr11	117693254	117693255	rs529623	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q23.3	NR	rs529623-C	0.4961	4E-9		0.0224	[0.015-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1483	chr11	117777928	117777929	rs11216614	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q23.3	NR	rs11216614-?	NR	2E-8				Illumina [7760689] (imputed)	N
1484	chr11	117851051	117851052	rs58603829	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q23.3	IL10RA	rs58603829-A	0.028	6E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
1484	chr11	117854820	117854821	rs143150842	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	11q23.3	NR	rs143150842-?	NR	7E-7		0.5226	[0.32-0.73] unit increase	Illumina [at least 560000] (imputed)	N
1484	chr11	117922309	117922310	rs78760381	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	11q23.3	TMPRSS4-AS1	rs78760381-T	0.0161	3E-6		0.2301	[0.13-0.33] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1485	chr11	118031985	118031986	rs11600901	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	11q23.3	SCN2B	rs11600901-?	NR	9E-6	(Afro-Caribbean)	9.83	[3.58-27.00]	Illumina [2485249] (imputed)	N
1485	chr11	118036710	118036711	rs677652	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	11q23.3	intergenic	rs677652-T	0.026808	4E-6	(EA)	0.062546	[0.036-0.089] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1485	chr11	118041739	118041740	rs149794440	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11q23.3	NR	rs149794440-?	NR	6E-6		0.01023	[0.0058-0.0147] unit decrease	Affymetrix [9658292] (imputed)	N
1485	chr11	118067536	118067537	rs141143931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q23.3	AMICA1	rs141143931-G	0.00195400000000001	8E-10		0.1541173	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1485	chr11	118080976	118080977	rs4938490	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	AMICA1	rs4938490-G	0.4121875	2E-338	(AMICA1, 8232_90_3)	0.8721295	[0.83-0.91] unit decrease	Illumina [> 1000000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q23.3		rs143034248-T	NR	7E-24		0.1796	[0.14-0.21] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q23.3		rs143034248-T	NR	3E-24		0.1805	[0.15-0.22] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q23.3	AMICA1	rs143034248-T	0.00511700000000004	4E-35		0.20514221	[0.17-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q23.3	AMICA1	rs143034248-T	0.00511899999999999	3E-10		0.10469084	[0.072-0.137] unit increase	Affymetrix [93095623] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q23.3	AMICA1	rs143034248-T	0.00511899999999999	2E-32		0.1972347	[0.16-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.3	AMICA1	rs143034248-T	0.00510900000000003	5E-13		0.12048908	[0.088-0.153] unit increase	Affymetrix [93095623] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs143034248-T	0.00510442	3E-48				Affymetrix, Illumina [24649327] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q23.3	NR	rs143034248-T	0.00517	2E-49		0.20421	[0.18-0.23] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs143034248-C	0.994909	2E-42				Affymetrix, Illumina [23114412] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q23.3	NR	rs143034248-C	0.994842	5E-43		0.198033	[0.17-0.23] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q23.3	NR	rs143034248-C	0.994815	7E-18		0.120725	[0.093-0.148] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.3		rs143034248-?	NR	7E-36				NR [~ 8900000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	8E-18		0.2138897	[0.17-0.26] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	1E-14		0.1918881	[0.14-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	4E-14		0.188511	[0.14-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	6E-14		0.1869026	[0.14-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	6E-16		0.2023151	[0.15-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	4E-9		0.146714	[0.098-0.195] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081269	118081270	rs143034248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q23.3	AMICA1	rs143034248-T	0.0059	9E-15		0.1931161	[0.14-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1485	chr11	118081344	118081345	rs17121881	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	AMICA1	rs17121881-T	0.583	6E-667	(Junctional adhesion molecule-like, AMICA1.8232.90.3)	1.0	[0.96-1.04] unit increase	Affymetrix [10572788] (imputed)	N
1485	chr11	118083663	118083664	rs1715429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q23.3	AMICA1	rs1715429-G	0.752926	5E-13		0.018509682	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1485	chr11	118086387	118086388	rs1573576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q23.3	AMICA1	rs1573576-T	0.751874	6E-16		0.020805722	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1486	chr11	118108330	118108331	rs55768116	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	11q23.3	NR	rs55768116-C	NR	2E-13		0.91	[0.88-0.93]	NR [NR] (imputed)	N
1486	chr11	118108330	118108331	rs55768116	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	11q23.3	NR	rs55768116-C	NR	4E-15		0.89	[0.86-0.91]	NR [NR] (imputed)	N
1486	chr11	118108330	118108331	rs55768116	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	11q23.3	NR	rs55768116-C	0.45	2E-9	(East Asian)	1.13	[1.08-1.17]	Illumina [~ 11000000] (imputed)	N
1486	chr11	118108330	118108331	rs55768116	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	11q23.3	MPZL3	rs55768116-C	0.489	2E-13		1.1	[1.07-1.13]	Illumina [~ 11000000] (imputed)	N
1486	chr11	118108330	118108331	rs55768116	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	11q23.3	NR	rs55768116-C	0.45	3E-10	(East Asian)	1.15	[1.1-1.2]	Illumina [~ 11000000] (imputed)	N
1486	chr11	118115330	118115331	rs75458655	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	11q23.3	MPZL2, JAML, MPZL3	rs75458655-T	NR	5E-12		1.203		Affymetrix [14661600] (imputed)	N
1486	chr11	118117017	118117018	rs11216831	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	11q23.3	PHLDB1	rs11216831-A	0.07	4E-6	(EA-triglyceride response)	42.47	[24.4-60.54] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1486	chr11	118122051	118122052	rs1715460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.3	MPZL3	rs1715460-G	0.743601	4E-10		0.016392559	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr11	118122051	118122052	rs1715460	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	NR	rs1715460-G	0.751	3E-211	(Junctional adhesion molecule-like, AMICA1.8232.90.3)	0.82	[0.76-0.88] unit increase	Affymetrix [10572788] (imputed)	N
1486	chr11	118125624	118125625	rs1056562	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	11q23.3	MPZL2	rs1056562-T	0.47309905	3E-10		1.107537	[1.072961595-1.143226538]	Illumina [10439017] (imputed)	N
1486	chr11	118126394	118126394	rs139157129	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	11q23.3	MPZL2	rs139157129-D	0.48	2E-7		0.93	[0.90-0.95]	Illumina [484196]	N
1486	chr11	118126575	118126576	rs1629083	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	11q23.3	MPZL2	rs1629083-C	0.497560515	1E-8		1.0693134	[1.044923397-1.094272745]	Illumina [10439017] (imputed)	N
1486	chr11	118133310	118133311	rs74543584	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	11q23.3	MPZL2	rs74543584-A	0.83	1E-8	(recessive)	4.79	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1486	chr11	118133310	118133311	rs74543584	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	11q23.3	MPZL2	rs74543584-A	0.83	1E-8	(recessive)	4.79	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q23.3		rs12798851-G	NR	3E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q23.3		rs12798851-G	NR	1E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q23.3	MPZL2	rs12798851-G	0.133171	6E-11		0.021383764	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs12798851-G	0.116015	9E-11				Affymetrix, Illumina [24332387] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q23.3	NR	rs12798851-G	0.134771	2E-13		0.020146	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1486	chr11	118135972	118135973	rs12798851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q23.3		rs12798851-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1486	chr11	118145685	118145686	rs17122021	19207018	Kim H	2009-02-01	Pharmacogenomics	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA	11q23.3	NR	rs17122021-?	NR	7E-7	(maximum post-operative pain rating)			Affymetrix [374975]	N
1486	chr11	118151328	118151329	rs11216843	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	11q23.3	NR	rs11216843-?	NR	1E-6		0.0128	[0.0076-0.018] unit decrease	Affymetrix [9658292] (imputed)	N
1486	chr11	118168085	118168086	rs61677309	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	11q23.3	MPZL2, CD3E	rs61677309-A	0.679913516	4E-7		1.0839134	[1.05-1.12]	Illumina [10439017] (imputed)	N
1486	chr11	118199424	118199425	rs117204111	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q23.3	intergenic	rs117204111-A	0.023	2E-6		0.111	[0.066-0.156] unit decrease	Affymetrix [7947838] (imputed)	N
1486	chr11	118199424	118199425	rs117204111	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q23.3	CD3E, CD3D	rs117204111-G		3E-8		0.491	unit increase	Affymetrix [at least 2696785] (imputed)	N
1487	chr11	118241994	118241995	rs502514	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	11q23.3	UBE4A	rs502514-G	0.3	2E-6	(univariate, leg)			Illumina [319818]	N
1487	chr11	118245439	118245440	rs61900929	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA1	5,359 Icelandic ancestry individuals	NA	11q23.3		rs61900929-T	0.0114	3E-86		1.67055	[1.5-1.84] unit decrease	Illumina [7506463] (imputed)	N
1487	chr11	118258055	118258056	rs1079118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	11q23.3		rs1079118-A	NR	1E-10		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1487	chr11	118262705	118262706	rs61900932	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	11q23.3	LOC100131626	rs61900932-C	0.782229075	5E-6		1.099922	[1.06-1.15]	Illumina [10439017] (imputed)	N
1487	chr11	118266522	118266523	rs78799967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.3		rs78799967-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1487	chr11	118267736	118267737	rs45448191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q23.3	NR	rs45448191-T	0.956005	2E-8		0.0180022	[0.012-0.024] unit increase	Affymetrix [16578495] (imputed)	N
1487	chr11	118281417	118281418	rs60545357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	11q23.3		rs60545357-C	NR	1E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1487	chr11	118281417	118281418	rs60545357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	11q23.3	ATP5L	rs60545357-C	0.175113	1E-11		0.019652009	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1487	chr11	118281417	118281418	rs60545357	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	11q23.3	NR	rs60545357-C	0.1739	7E-7		0.0077	[0.0046-0.0108] unit increase	NR [7666894] (imputed)	N
1487	chr11	118296734	118296735	rs59255055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs59255055-A	0.279596	3E-13				Affymetrix, Illumina [24653286] (imputed)	N
1487	chr11	118296734	118296735	rs59255055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs59255055-A	0.277973	6E-12				Affymetrix, Illumina [24558453] (imputed)	N
1487	chr11	118296734	118296735	rs59255055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	11q23.3	NR	rs59255055-A	0.216293	6E-12		0.01542	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1487	chr11	118298251	118298252	rs4456287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	11q23.3	ATP5L	rs4456287-C	0.215318	3E-12		0.018794492	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1487	chr11	118298251	118298252	rs4456287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	11q23.3	NR	rs4456287-C	0.216891	2E-13		0.016409	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1487	chr11	118311676	118311677	rs77535829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q23.3		rs77535829-T	NR	1E-15		0.0354	[0.027-0.044] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1487	chr11	118311868	118311869	rs77487830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q23.3	NR	rs77487830-G	NR	1E-9		0.0374	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1487	chr11	118312869	118312870	rs74422681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q23.3		rs74422681-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1487	chr11	118314848	118314849	rs2017122	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	11q23.3	NR	rs2017122-T	NR	1E-6		4.811745	[NR] z score increase	Affymetrix [up to 6544862] (imputed)	N
1487	chr11	118341648	118341649	rs7948661	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	11q23.3	NR	rs7948661-?		4E-8				NR [520857]	N
1487	chr11	118341648	118341649	rs7948661	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	11q23.3	NR	rs7948661-C	NR	5E-6	(5 degree of freedom test)	1.05	[1.00-1.10]	NR [1252901] (imputed)	N
1487	chr11	118346598	118346599	rs9332781	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q23.3	NR	rs9332781-G	0.0633984480775292	3E-8		0.016883075	[0.011-0.023] unit increase	NR [NR]	N
1487	chr11	118346862	118346863	rs514924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	KMT2A	rs514924-A	0.100433	2E-8		0.017815	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
1487	chr11	118346862	118346863	rs514924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	KMT2A	rs514924-A	0.100401	1E-9		0.0198139	[0.013-0.026] unit increase	Affymetrix [NR] (imputed)	N
1487	chr11	118355641	118355642	rs9332801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q23.3	NR	rs9332801-C	0.063394879552165	6E-9		0.010940774	[0.0072-0.0146] unit increase	NR [NR]	N
1487	chr11	118355641	118355642	rs9332801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q23.3	NR	rs9332801-C	0.063394879552165	3E-8		0.013162976	[0.0085-0.0178] unit increase	NR [NR]	N
1487	chr11	118355641	118355642	rs9332801	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q23.3	NR	rs9332801-C	0.063394879552165	2E-8		0.011005157	[0.0072-0.0149] unit increase	NR [NR]	N
1488	chr11	118365209	118365210	rs9332817	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	11q23.3	KMT2A	rs9332817-C	0.0265006	4E-8		0.115795	[0.075-0.157] unit decrease	Affymetrix [9463307] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	11q23.3		rs1064939-T	NR	5E-14		0.0593	[0.044-0.075] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	11q23.3	KMT2A	rs1064939-A	0.977605	2E-15		0.0540967	[0.041-0.067] unit increase	Affymetrix [NR] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	11q23.3	MLL	rs1064939-?	NR	1E-10		0.0568	[0.041-0.072] unit decrease	Affymetrix [5701386] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs1064939-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q23.3	NR	rs1064939-A	0.9784	2E-10		1.139	[1.1-1.18]	Affymetrix, Illumina [NR] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.3		rs1064939-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1488	chr11	118396330	118396331	rs1064939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.3		rs1064939-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1488	chr11	118419436	118419437	rs111657631	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	11q23.3	NR	rs111657631-?	NR	3E-6		18.532	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1488	chr11	118442233	118442234	rs7110984	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q23.3	IFT46	rs7110984-?	NR	9E-9		0.0349	[0.024-0.045] unit decrease	Affymetrix [5701386] (imputed)	N
1488	chr11	118449369	118449370	rs17122278	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q23.3	PHLDB1	rs17122278-A	0.868	2E-10	(Trans-ethnic initial)	0.0236	[0.013-0.034] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1488	chr11	118449369	118449370	rs17122278	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q23.3	PHLDB1	rs17122278-A	0.527	9E-8	(Asian initial, BMI unadjusted)	0.0465	[0.029-0.064] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1488	chr11	118466248	118466249	rs7115634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q23.3		rs7115634-G	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1488	chr11	118467589	118467590	rs150403348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.3	ARCN1	rs150403348-A	0.013799	3E-13		0.070958376	[0.052-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1488	chr11	118467589	118467590	rs150403348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.3	ARCN1	rs150403348-A	0.0137969999999999	4E-12		0.067091	[0.048-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1488	chr11	118477366	118477367	rs498872	30714141	Chen H	2019-02-04	Int J Cancer	Two novel genetic variants in the STK38L and RAB27A genes are associated with glioma susceptibility.	Glioma	992 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,105 Han Chinese ancestry cases, 3,374 Han Chinese ancestry controls	11q23.3	PHLDB1	rs498872-A	0.74	3E-9		1.25	[1.16-1.34]	Illumina [1889625] (imputed)	N
1488	chr11	118477366	118477367	rs498872	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	11q23.3	PHLDB1	rs498872-?	NR	5E-11		1.22	[NR]	Illumina [424460]	N
1488	chr11	118477366	118477367	rs498872	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	11q23.3	PHLDB1	rs498872-T	0.69	1E-8		1.18	[1.13-1.24]	Illumina [454576]	N
1488	chr11	118478329	118478330	rs7125115	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q non-codeleted)	316 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	245 European and unknown ancestry cases, 808 European and unknown ancestry controls	11q23.3	PHLDB1	rs7125115-?	NR	2E-9		5.995	NR z score decrease	Illumina [NR] (imputed)	N
1488	chr11	118478329	118478330	rs7125115	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	11q23.3	PHLDB1	rs7125115-?	NR	4E-13		7.25	NR z score decrease	Illumina [NR] (imputed)	N
1488	chr11	118478403	118478404	rs4938515	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	11q23.3	NR	rs4938515-A	0.37	3E-7		1.07	[1.04-1.10]	NR [NR] (imputed)	N
1488	chr11	118478403	118478404	rs4938515	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	11q23.3	NR	rs4938515-A	0.37	1E-6		1.08	[1.05-1.12]	NR [NR] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	11q23.3	PHLDB1	rs12803321-G	NR	9E-13	(females)	1.43	[1.30-1.57]	Affymetrix, Illumina [NR] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	11q23.3	PHLDB1	rs12803321-G	NR	2E-14	(males)	1.41	[1.29-1.53]	Affymetrix, Illumina [NR] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	11q23.3	PHLDB1	rs12803321-G	NR	8E-6	(females)	1.18	[1.10-1.26]	Affymetrix, Illumina [NR] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	11q23.3	PHLDB1	rs12803321-G	0.643	6E-43		1.42	1.35-1.49	Illumina [at least 6769856] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	11q23.3	PHLDB1	rs12803321-G	0.643	1E-15		1.17	1.13-1.22	Illumina [at least 6887412] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	11q23.3	NR	rs12803321-G	NR	4E-25		1.4705882	[1.37-1.59]	Illumina [at least 8427548] (imputed)	N
1488	chr11	118480114	118480115	rs12803321	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	11q23.3	NR	rs12803321-G	NR	2E-16		1.2820514	[1.22-1.37]	Illumina [at least 8427548] (imputed)	N
1488	chr11	118480222	118480223	rs67307131	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	11q23.3	PHLDB1	rs67307131-C	35.37	1E-14	(additive)	1.04	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1488	chr11	118480222	118480223	rs67307131	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	11q23.3		rs67307131-?	NR	7E-13		7.171901	z score increase	Affymetrix [NR] (imputed)	N
1488	chr11	118480284	118480285	rs12225399	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	PHLDB1	rs12225399-C	0.3783	1E-10		0.0176	[0.012-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1488	chr11	118480694	118480695	rs34026809	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.3	PHLDB1	rs34026809-G	NR	8E-17		1.0905125	NR	Affymetrix, Illumina [8278136] (imputed)	N
1488	chr11	118486066	118486067	rs11603023	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q23.3	PHLDB1	rs11603023-T	0.42	1E-8		0.022	[NR] unit increase	NR [NR] (imputed)	N
1488	chr11	118488781	118488782	rs11216930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q23.3		rs11216930-C	NR	1E-54		0.0375	[0.033-0.042] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1488	chr11	118488781	118488782	rs11216930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	11q23.3		rs11216930-C	0.206237	3E-21		0.0451469	[0.036-0.055] unit decrease	Illumina [13474352] (imputed)	N
1488	chr11	118488781	118488782	rs11216930	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q23.3	PHLDB1	rs11216930-?		4E-14		0.0368	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
1488	chr11	118488781	118488782	rs11216930	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11q23.3	PHLDB1	rs11216930-?	NR	2E-13		0.03955	[0.029-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1489	chr11	118490075	118490076	rs10892247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q23.3		rs10892247-A	NR	3E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1489	chr11	118496118	118496119	rs45565037	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	11q23.3	PHLDB1, TREH	rs45565037-?	NR	2E-8		0.124	unit decrease	Illumina [up to 143074]	N
1489	chr11	118501458	118501459	rs11216934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q23.3		rs11216934-A	0.46	2E-12		7.02	z score increase	Affymetrix [9061022] (imputed)	N
1489	chr11	118501458	118501459	rs11216934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q23.3		rs11216934-A	0.46	2E-13		7.33	z score increase	Affymetrix [9061022] (imputed)	N
1489	chr11	118514021	118514022	rs613243	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q23.3	NR	rs613243-C	0.454	7E-14				NR [9056863] (imputed)	N
1489	chr11	118514624	118514625	rs11216938	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q23.3	MIR6716	rs11216938-C	0.773911	7E-38		0.00381696	[0.0033-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
1489	chr11	118515578	118515579	rs10790255	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	PHLDB1	rs10790255-G	0.247064	2E-37		0.0273616	[0.023-0.032] unit decrease	NR [13737936] (imputed)	N
1489	chr11	118515578	118515579	rs10790255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.3		rs10790255-?	NR	4E-40				NR [~ 8900000] (imputed)	N
1489	chr11	118515578	118515579	rs10790255	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs10790255-?	NR	2E-31		0.0298251	[0.025-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1489	chr11	118515578	118515579	rs10790255	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	PHLDB1	rs10790255-G	0.248198	4E-9	(women)	0.0303983	[0.02-0.041] unit decrease	NR [17166351] (imputed)	N
1489	chr11	118515578	118515579	rs10790255	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q23.3	PHLDB1	rs10790255-G	0.247602	1E-13		0.0285315	[0.021-0.036] unit decrease	NR [17166351] (imputed)	N
1489	chr11	118530610	118530611	rs2276065	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q23.3		rs2276065-C	0.22	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
1489	chr11	118534081	118534082	rs10790256	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	11q23.3	TREH	rs10790256-T	0.222	1E-9		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
1489	chr11	118535839	118535840	rs12225548	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q23.3	NR	rs12225548-G	0.2217	1E-11				NR [9056863] (imputed)	N
1489	chr11	118535839	118535840	rs12225548	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q23.3	TREH	rs12225548-C	0.77	7E-39		13.0	z-score increase	Affymetrix [4311822] (imputed)	N
1489	chr11	118540103	118540104	rs506234	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q23.3	TREH	rs506234-C	0.5641	8E-11		0.0173	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1489	chr11	118549581	118549582	rs507080	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	11q23.3	TREH	rs507080-A	0.35	3E-30	(Trehalose)	0.51	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1489	chr11	118566745	118566746	rs533646	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q23.3	TREH	rs533646-G	0.68	8E-11	(conditioned on rs9736016)	1.09		Illumina [161311]	N
1489	chr11	118567732	118567733	rs481903	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q23.3	TREH, DDX6	rs481903-?	NR	2E-8		0.02652	[0.017-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1489	chr11	118573518	118573519	rs4639966	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	11q23.3	NR	rs4639966-G	0.30	1E-16		1.29	[1.22-1.37]	Illumina [493955]	N
1489	chr11	118574674	118574675	rs494459	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q23.3	TREH	rs494459-T	0.41	2E-8		0.02	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1489	chr11	118576462	118576463	rs496547	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	11q23.3	TREH, DDX6	rs496547-A	0.34	2E-7		0.058	[0.036-0.08] unit decrease	Illumina [2385183] (imputed)	N
1489	chr11	118577989	118577990	rs480958	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q23.3		rs480958-G	NR	1E-10		0.262282	[0.18-0.34] unit increase	NR [5275424] (imputed)	N
1489	chr11	118577989	118577990	rs480958	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q23.3	NR	rs480958-A	0.624	3E-19		0.871	[0.84-0.9]	Illumina [11270530] (imputed)	N
1489	chr11	118577989	118577990	rs480958	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q23.3	NR	rs480958-G	0.363684	9E-9		0.0120225	[0.0079-0.0161] unit increase	NR [NR]	N
1489	chr11	118579864	118579865	rs10892258	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	11q23.3	TREH, DDX6	rs10892258-?	0.763	2E-11		1.1627907		Illumina [139553]	N
1489	chr11	118585145	118585146	rs112799932	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	DDX6	rs112799932-T	0.75640625	6E-6	(DDX6, 12869_68_3)	0.12795535	[0.073-0.183] unit decrease	Illumina [> 1000000] (imputed)	N
1489	chr11	118590196	118590197	rs492144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q23.3		rs492144-T	NR	3E-20		0.0124	[0.0099-0.0149] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1489	chr11	118590742	118590743	rs503542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11q23.3	NR	rs503542-G	0.450311	6E-10		0.0183001	[0.012-0.024] unit increase	Affymetrix [16577424] (imputed)	N
1489	chr11	118595144	118595145	rs145528548	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	11q23.3	Intergenic	rs145528548-?		5E-6		2.11	[1.53-2.91]	Illumina [7645193] (imputed)	N
1489	chr11	118598611	118598612	rs568688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.3		rs568688-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1489	chr11	118608715	118608716	rs7945144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	11q23.3		rs7945144-G	NR	1E-9		0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
1489	chr11	118611780	118611781	rs10892279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q23.3	NR	rs10892279-A	NR	5E-29		0.0325	[0.027-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1489	chr11	118611780	118611781	rs10892279	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	11q23.3	DDX6	rs10892279-?	NR	1E-10				Illumina [129464] (imputed)	N
1489	chr11	118611780	118611781	rs10892279	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	11q23.3	DDX6	rs10892279-?	NR	3E-8				Illumina [129464] (imputed)	N
1489	chr11	118611780	118611781	rs10892279	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	11q23.3	DDX6	rs10892279-?	NR	1E-12				Illumina [472854]	N
1489	chr11	118613673	118613674	rs7130875	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	11q23.3	TREH, DDX6	rs7130875-G	0.2479	1E-7		1.1656		Illumina [126270]	N
1489	chr11	118613673	118613674	rs7130875	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls	1,217 European ancestry cases, 5,935 European ancestry controls	11q23.3	TREH, DDX6	rs7130875-G	0.248	3E-6		1.22		Illumina [126270]	N
1490	chr11	118639352	118639353	rs11217020	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	11q23.3	DDX6	rs11217020-?	0.8	2E-11		1.1904762		Illumina [4723365]	N
1490	chr11	118639652	118639653	rs75411106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.3		rs75411106-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1490	chr11	118642084	118642085	rs10892286	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11q23.3	DDX6	rs10892286-?	NR	2E-6		1.1363636	[1.08-1.2]	Illumina [at least 5000000] (imputed)	N
1490	chr11	118644212	118644213	rs1790187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.3	DDX6	rs1790187-G	0.864813	3E-12		0.022788744	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1490	chr11	118644581	118644582	rs2510897	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	11q23.3	DDX6	rs2510897-A	0.6	4E-9		0.029	[0.017-0.041] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1490	chr11	118648607	118648607	rs374046858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q23.3		rs374046858-GAA	NR	2E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1490	chr11	118648623	118648624	rs61219050	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	11q23.3	DDX6	rs61219050-A	0.2473	3E-6		1.1562		Illumina [126270]	N
1490	chr11	118675771	118675772	rs11217036	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	11q23.3	DDX6, CXCR5	rs11217036-?	NR	9E-11		1.0649627	[1.04-1.09]	Illumina [12845910] (imputed)	N
1490	chr11	118677085	118677086	rs11217037	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	11q23.3	DDX6	rs11217037-G	0.8	1E-12		1.1494253	[1.11-1.2]	Illumina [133816] (imputed)	N
1490	chr11	118680071	118680072	rs607472	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q23.3	NR	rs607472-?	NR	9E-6	(female)	0.10823	[0.06-0.156] unit increase	Affymetrix [7794483] (imputed)	N
1490	chr11	118680071	118680072	rs607472	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q23.3	NR	rs607472-?	NR	4E-8	(male)	0.19495	[0.13-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1490	chr11	118680071	118680072	rs607472	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q23.3	NR	rs607472-?	NR	1E-12		0.1592	[0.12-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1490	chr11	118680647	118680648	rs11217040	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	11q23.3	DDX6, CXCR5, UBE4A	rs11217040-?	NR	2E-11		0.89		Illumina [109572]	N
1490	chr11	118681082	118681083	rs73005426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q23.3		rs73005426-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1490	chr11	118683326	118683327	rs76704408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q23.3		rs76704408-T	0.211348	2E-16		0.022291165	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1490	chr11	118683326	118683327	rs76704408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q23.3		rs76704408-T	0.211358	5E-13		0.019611565	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1490	chr11	118683326	118683327	rs76704408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q23.3	NR	rs76704408-T	0.211719	4E-13		0.018143	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1490	chr11	118692726	118692727	rs503425	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	11q23.3	DDX6	rs503425-C	0.2	3E-6		1.16	[1.08-1.24]	Illumina [~ 2100000] (imputed)	N
1490	chr11	118693160	118693161	rs28361986	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q23.3		rs28361986-A	NR	5E-14		0.87	[0.84-0.9]	NR [13810676] (imputed)	N
1490	chr11	118693160	118693161	rs28361986	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	11q23.3	CXCR5, DDX6	rs28361986-T	0.8022	2E-23		1.0638298	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1490	chr11	118698536	118698537	rs638893	22951725	Tang XF	2012-09-06	J Invest Dermatol	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	11q23.3	AK021715, DDX6, TREH, CXCR5, PHLDB1	rs638893-C	0.11	2E-9		1.22	[1.14-1.30]	Illumina [493909]	N
1490	chr11	118700217	118700218	rs2510902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q23.3	NR	rs2510902-A	0.20158	3E-10		0.015138	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1490	chr11	118718728	118718729	rs10892296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs10892296-T	0.184024	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
1490	chr11	118724893	118724894	rs9736016	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	11q23.3		rs9736016-?	NR	3E-7		2.4456832		Affymetrix [710007]	N
1490	chr11	118724893	118724894	rs9736016	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q23.3	CXCR5	rs9736016-T	0.63	3E-15		1.1		Illumina [161311]	N
1490	chr11	118725659	118725660	rs4936441	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q23.3	NR	rs4936441-C	0.137	6E-16		0.823	[0.78-0.87]	Illumina [11270530] (imputed)	N
1490	chr11	118726842	118726843	rs10892299	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	11q23.3	intergenic	rs10892299-?	0.83	2E-8		1.247548		Illumina [252970]	N
1490	chr11	118726842	118726843	rs10892299	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	11q23.3	intergenic	rs10892299-?		2E-11		1.1708161		Illumina [252970]	N
1490	chr11	118726842	118726843	rs10892299	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	11q23.3	DDX6	rs10892299-T	NA	2E-13				Illumina [252970]	N
1490	chr11	118729390	118729391	rs10790268	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q23.3	CXCR5	rs10790268-A	NR	1E-13		0.0660634	[-0.0517-0.18382] unit decrease	Illumina [8380626] (imputed)	N
1490	chr11	118729390	118729391	rs10790268	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q23.3	CXCR5	rs10790268-A	0.21	3E-15	(EA)	0.1593	[0.12-0.2] unit decrease	Illumina [8380626] (imputed)	N
1490	chr11	118729390	118729391	rs10790268	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q23.3	CXCR5	rs10790268-G	0.81	1E-15		1.14	[1.11-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1490	chr11	118729390	118729391	rs10790268	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q23.3	CXCR5	rs10790268-G	0.79	1E-17	(EA)	1.17	[1.13-1.22]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1490	chr11	118733623	118733624	rs77871618	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	11q23.3	DDX6, CXCR5	rs77871618-A	0.158	3E-13		1.4	[1.28-1.53]	Illumina [776516]	N
1490	chr11	118735475	118735476	rs10892301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q23.3		rs10892301-A	0.371728	1E-8		0.0122213	[0.008-0.0164] unit decrease	Illumina [13479295] (imputed)	N
1490	chr11	118738280	118738281	rs7119038	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	11q23.3	CXCR5	rs7119038-A	0.77	1E-8		1.3513513	[1.16-1.56]	Illumina [648937]	N
1490	chr11	118738297	118738298	rs7119044	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q23.3		rs7119044-G	NR	7E-38		0.359605	[0.3-0.41] unit decrease	NR [2787054] (imputed)	N
1490	chr11	118740104	118740105	rs201150316	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	11q23.3		rs201150316-AT	NR	5E-35		0.369175	[0.31-0.43] unit decrease	NR [5054572] (imputed)	N
1490	chr11	118741156	118741157	rs7117261	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	11q23.3	NR	rs7117261-C		3E-10		1.46	[1.30-1.64]	Illumina [109812]	N
1490	chr11	118741841	118741842	rs4938573	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	11q23.3	CXCR5	rs4938573-C	0.204	6E-20		1.34	[1.26-1.43]	Illumina [up to 21554489]	N
1490	chr11	118741841	118741842	rs4938573	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	11q23.3	DDX6, SETP16	rs4938573-?	0.62	5E-7		1.1490291		Illumina [129464] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	11q23.3	DDX6, CXCR5	rs12365699-A	0.166687348850372	1E-9		0.053535074	[0.036-0.071] unit decrease	Affymetrix [35186738] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q23.3	CXCR5	rs12365699-G	0.84	2E-18				NR [> 9500000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q23.3	CXCR5	rs12365699-G	0.836856	2E-17		1.0718168	[1.05483384624064-1.08907327958864]	NR [9572556] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	11q23.3	CXCR5, BCL9L, MIR4492, DDX6, UPK2, FOXR1	rs12365699-G	0.83333	4E-11		1.058537	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	11q23.3	NR	rs12365699-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q23.3	NR	rs12365699-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	11q23.3	DDX6	rs12365699-G	0.833208	9E-9		1.0567931	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.3	DDX6	rs12365699-G	NR	2E-19		1.1237	NR	Affymetrix, Illumina [8278136] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q23.3	NR	rs12365699-G	0.8349	3E-10		1.05241	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q23.3	NR	rs12365699-G	0.8349	1E-9		1.0459157	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	11q23.3	CXCR5, DDX6	rs12365699-G	0.833	2E-13		1.167	[1.120-1.216]	Affymetrix [10894596] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	11q23.3	CXCR5, DDX6	rs12365699-G	0.833	4E-14		1.396	[1.03-1.76] unit decrease	Affymetrix [10894596] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	11q23.3	DDX6, CXCR5	rs12365699-G	0.832	4E-12		1.1	[1.07-1.13]	Affymetrix [9000000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11q23.3	DDX6, CXCR5	rs12365699-?	NR	4E-30		1.119	[1.1-1.14]	Affymetrix [9000000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q23.3	DDX6, CXCR5	rs12365699-G	NR	7E-12		1.064	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	11q23.3		rs12365699-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q23.3		rs12365699-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1490	chr11	118743285	118743286	rs12365699	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q23.3	DDX6, CXCR5	rs12365699-G	0.85	5E-18		1.061	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1490	chr11	118743771	118743772	rs6421571	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	11q23.3	CXCR5, DDX6	rs6421571-C	0.8	2E-13		1.39	NR	Illumina [1143634] (imputed)	N
1490	chr11	118743771	118743772	rs6421571	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	11q23.3	CXCR5	rs6421571-C	0.81	3E-12		1.37	[1.25-1.50]	Illumina [507467]	N
1490	chr11	118745883	118745884	rs10790275	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11q23.3		rs10790275-C	0.8053	7E-9		1.09		Affymetrix, Illumina [9397031] (imputed)	N
1490	chr11	118746768	118746769	rs4938576	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	11q23.3	intergenic	rs4938576-T	0.49	7E-6	(male)	0.0778	[0.044-0.112] unit decrease	Illumina [6380737] (imputed)	N
1490	chr11	118746768	118746769	rs4938576	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	11q23.3	intergenic	rs4938576-T	0.49	4E-6	(male)	45.7	[26.49-64.91] unit decrease	Illumina [6380737] (imputed)	N
1490	chr11	118746768	118746769	rs4938576	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	11q23.3	DDX6, CXCR5	rs4938576-G	0.592	2E-11		0.028	[0.02-0.036] unit decrease	NR [NR] (imputed)	N
1490	chr11	118746768	118746769	rs4938576	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	11q23.3	DDX6, CXCR5	rs4938576-G	0.592	2E-11		0.028	[0.02-0.036] unit decrease	NR [7647814] (imputed)	N
1490	chr11	118746768	118746769	rs4938576	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q23.3	NR	rs4938576-G	0.587773	2E-8		0.00717531	[0.0046-0.0097] unit increase	Affymetrix [16578495] (imputed)	N
1490	chr11	118747575	118747576	rs55756957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.3		rs55756957-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1490	chr11	118747812	118747813	rs6589706	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	11q23.3	CXCR5, Y_RNA	rs6589706-A	0.38	6E-7		0.7551	[NR]	Illumina [421909] (imputed)	N
1490	chr11	118747812	118747813	rs6589706	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q23.3	DDX6	rs6589706-A	NR	5E-26		1.11	NR	Affymetrix, Illumina [8278136] (imputed)	N
1490	chr11	118749317	118749318	rs78312641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q23.3	NR	rs78312641-A	0.128471	3E-10		0.0078484	[0.0054-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
1490	chr11	118749317	118749318	rs78312641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q23.3	NR	rs78312641-A	0.128471	2E-10		0.00900897	[0.0062-0.0118] unit increase	Affymetrix [16582965] (imputed)	N
1490	chr11	118750966	118750967	rs11602393	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11q23.3	NR	rs11602393-?	NR	5E-6		0.0533	[0.031-0.076] unit decrease	Illumina [at least 560000] (imputed)	N
1491	chr11	118754313	118754314	rs11574667	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q23.3	CXCR5	rs11574667-?	NR	2E-9		0.05596	[0.038-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1491	chr11	118754352	118754353	rs630923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q23.3	NR	rs630923-A	NR	3E-12		0.0244	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1491	chr11	118754352	118754353	rs630923	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	11q23.3	intergenic	rs630923-?		7E-6				Illumina [9560910] (imputed)	N
1491	chr11	118754352	118754353	rs630923	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	11q23.3	CXCR5	rs630923-C	0.846	7E-9		1.074	[1.039-1.11]	Affymetrix, Illumina [1230000] (imputed)	N
1491	chr11	118754352	118754353	rs630923	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	11q23.3	CXCR5	rs630923-C	NR	3E-7		1.12	[1.1-1.14]	Illumina [465434]	N
1491	chr11	118755737	118755738	rs523604	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q23.3	CXCR5	rs523604-A	0.54	6E-15	(conditioned on rs9736016 and rs533646)	1.1		Illumina [161311]	N
1491	chr11	118758088	118758089	rs497916	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	11q23.3	NR	rs497916-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1491	chr11	118758924	118758925	rs187437652	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on resting CD4 regulatory T cell	2,918 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.3		rs187437652-T	0.0053	5E-13		1.341	[0.98-1.7] unit decrease	Illumina [17954415] (imputed)	N
1491	chr11	118758924	118758925	rs187437652	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on activated CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.3		rs187437652-T	0.00547	5E-8		1.004	[0.64-1.36] unit decrease	Illumina [17954450] (imputed)	N
1491	chr11	118758924	118758925	rs187437652	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.3		rs187437652-T	0.00532	2E-12		1.293	[0.93-1.65] unit decrease	Illumina [17945511] (imputed)	N
1491	chr11	118758924	118758925	rs187437652	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.3		rs187437652-T	0.00547	1E-12		1.301	[0.94-1.66] unit decrease	Illumina [17954450] (imputed)	N
1491	chr11	118758924	118758925	rs187437652	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q23.3		rs187437652-T	0.00547	2E-9		1.103	[0.75-1.46] unit decrease	Illumina [17954450] (imputed)	N
1491	chr11	118763735	118763736	rs12363277	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	11q23.3	CXCR5	rs12363277-T	0.9408	6E-6		0.1191	[0.067-0.171] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1491	chr11	118767563	118767564	rs75438046	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	11q23.3	CXCR5	rs75438046-G	0.973	1E-8		0.27	[0.18-0.36] unit increase	NR [25472218] (imputed)	N
1491	chr11	118782473	118782474	rs11606719	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	11q23.3		rs11606719-C	NR	3E-6		0.028	[0.016-0.04] unit increase	NR [7831927]	N
1491	chr11	118782473	118782474	rs11606719	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	11q23.3		rs11606719-G	0.08443	1E-5		0.6714	[0.5627-0.8009]	Affymetrix [7975321] (imputed)	N
1491	chr11	118789656	118789657	rs12294466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.3		rs12294466-C	0.919	2E-9				Affymetrix [10369434] (imputed)	N
1491	chr11	118793612	118793613	rs11217091	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	11q23.3		rs11217091-C	0.1118	7E-7	(East Asian)	1.11	[1.07-1.16]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1492	chr11	118901261	118901262	rs3759012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q23.3	NR	rs3759012-T	NR	7E-12		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr11	118901261	118901262	rs3759012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q23.3	NR	rs3759012-T	NR	1E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr11	118901613	118901614	rs1784559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q23.3		rs1784559-T	NR	2E-25		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1492	chr11	118902122	118902123	rs188193075	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	Intergenic	rs188193075-G	0.998	3E-6	(AA)	0.228	unit increase	Illumina [NR] (imputed)	N
1492	chr11	118902237	118902238	rs150556575	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	Intergenic	rs150556575-G	0.998	3E-6	(AA)	0.228	unit increase	Illumina [NR] (imputed)	N
1492	chr11	118903038	118903039	rs10892324	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	11q23.3	NR	rs10892324-G	NR	1E-6	(phenotype 2)	1.64	[NR]	Illumina [> 8000000] (imputed)	N
1492	chr11	118904232	118904233	rs583893	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q23.3		rs583893-G	0.57	4E-10				NR [NR] (imputed)	N
1492	chr11	118904232	118904233	rs583893	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	11q23.3		rs583893-G	0.57	3E-12		0.013	mmol/L decrease	NR [NR] (imputed)	N
1492	chr11	118904232	118904233	rs583893	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q23.3		rs583893-G	0.57	3E-11		0.01	% increase	NR [NR] (imputed)	N
1492	chr11	118904232	118904233	rs583893	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	11q23.3		rs583893-G	0.57	9E-6		0.009	U/L increase	NR [NR] (imputed)	N
1492	chr11	118911947	118911948	rs185511413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	RP11-110I1.6	rs185511413-T	0.00400699999999998	2E-11		0.12554993	[0.089-0.162] unit increase	Affymetrix [93095623] (imputed)	N
1492	chr11	118912701	118912702	rs10892325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q23.3		rs10892325-C	NR	5E-20		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1492	chr11	118913053	118913054	rs185836767	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	Intergenic	rs185836767-C	0.998	2E-6	(AA)	0.226	unit increase	Illumina [NR] (imputed)	N
1492	chr11	118913992	118913993	rs1003081	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q23.3	NA	rs1003081-T	0.437	8E-15		0.0127	[0.0096-0.0158] unit increase	NR [~ 27400000] (imputed)	N
1492	chr11	118924138	118924139	rs147134271	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q23.3	HYOU1	rs147134271-G	0.998	1E-6	(AA)	0.231	unit increase	Illumina [NR] (imputed)	N
1492	chr11	118937984	118937985	rs1784461	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q23.3	NR	rs1784461-A	0.4043	5E-10		0.015683528	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1492	chr11	118941595	118941596	rs7925100	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q23.3	VPS11	rs7925100-G	0.603989	6E-11		0.00916807	[0.0064-0.0119] unit decrease	Affymetrix [12370749]	N
1492	chr11	118941595	118941596	rs7925100	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q23.3	VPS11	rs7925100-G	0.603654	2E-21		0.0184897	[0.015-0.022] unit increase	Affymetrix [NR] (imputed)	N
1492	chr11	118941595	118941596	rs7925100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs7925100-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1492	chr11	118941595	118941596	rs7925100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.3		rs7925100-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1492	chr11	118943432	118943433	rs1185460	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q23.3	VPS11	rs1185460-A	0.593	8E-7		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1492	chr11	118944674	118944675	rs3825061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q23.3	NA	rs3825061-T	0.387	5E-15		0.0142	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1492	chr11	118944674	118944675	rs3825061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q23.3	NA	rs3825061-T	0.3863	6E-16		0.014	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
1492	chr11	118947153	118947154	rs1168570	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDE11A	5,344 Icelandic ancestry individuals	NA	11q23.3		rs1168570-C	0.3764	7E-12		0.121633	[0.087-0.156] unit increase	Illumina [7506463] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	4E-9		0.0222229	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	5E-11		0.0241785	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	8E-10		0.023074	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	9E-11		0.0240167	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	2E-9		0.0228351	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	7E-11		0.0240874	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q23.3		rs1177562-C	0.589588	1E-9		0.022546	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118949330	118949331	rs1177562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q23.3		rs1177562-T	NR	3E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1492	chr11	118950216	118950217	rs1307145	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q23.3	VPS11	rs1307145-?	NR	7E-9		0.0309075	[0.02-0.041] unit increase	Illumina [4804024] (imputed)	N
1492	chr11	118950613	118950614	rs187175740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	VPS11	rs187175740-T	0.00412100000000004	4E-12		0.13073252	[0.094-0.168] unit increase	Affymetrix [93095623] (imputed)	N
1492	chr11	118952172	118952173	rs15818	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	11q23.3	VPS11	rs15818-G	0.3963	9E-12		0.0128	[0.0093-0.0163] unit increase	Illumina [246328]	N
1492	chr11	118953201	118953202	rs7127212	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q23.3	NR	rs7127212-C	0.6067	2E-8		0.0227	[0.015-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1492	chr11	118957245	118957246	rs1799992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q23.3		rs1799992-C	NR	5E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	5E-9		0.0228366	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	1E-10		0.0246513	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	7E-9		0.0226465	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	1E-8		0.0224054	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	3E-10		0.0240974	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	4E-8		0.0216135	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	9E-10		0.0238251	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568038	6E-9		0.0224803	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	5E-10		0.0240172	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	6E-11		0.02491	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	4E-10		0.0241113	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	3E-8		0.0225706	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q23.3		rs141949189-A	0.568027	2E-9		0.0234964	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1492	chr11	118957387	118957388	rs141949189	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q23.3	HMBS	rs141949189-A	0.567169	1E-20		0.0192774	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
1492	chr11	118958868	118958869	rs1006195	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q23.3	NR	rs1006195-T	0.3934	3E-14		0.0139	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1492	chr11	118965337	118965338	rs1064193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.3	Intergenic	rs1064193-A	0.348	1E-8	(MTAG)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1492	chr11	118966520	118966521	rs2509049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q23.3	H2AFX	rs2509049-T	0.42233	1E-9		0.0135428	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1492	chr11	118966520	118966521	rs2509049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q23.3	NR	rs2509049-T	0.422321	3E-10		0.012789	[0.0088-0.0168] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1492	chr11	118966779	118966780	rs2509851	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q23.3	DPAGT1	rs2509851-A	0.6278	1E-11		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1492	chr11	118967523	118967524	rs8551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q23.3	DPAGT1	rs8551-T	0.421967	1E-14		0.017280571	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chr11	118967757	118967758	rs643788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.3	DPAGT1	rs643788-C	0.422364	2E-15		0.02034444	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chr11	118967757	118967758	rs643788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.3	DPAGT1	rs643788-C	0.422263	2E-80		0.043387163	[0.039-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chr11	118967757	118967758	rs643788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs643788-C	0.460198	3E-11				Affymetrix, Illumina [21126107] (imputed)	N
1492	chr11	118971250	118971251	rs649870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q23.3	NR	rs649870-G	0.430282	4E-20		0.017545	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1492	chr11	118974484	118974485	rs599385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q23.3		rs599385-G	NR	2E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1492	chr11	118977925	118977926	rs6421572	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q23.3	C2CD2L	rs6421572-A	0.103967	1E-10		0.01961	[0.014-0.026] unit decrease	NR [13737936] (imputed)	N
1492	chr11	118977925	118977926	rs6421572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.3		rs6421572-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1492	chr11	118981024	118981025	rs617948	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	11q23.3	C2CD2L	rs617948-A	0.4912	7E-8		0.0066	[0.0041-0.0091] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1492	chr11	119006787	119006788	rs79487987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	11q23.3	NR	rs79487987-A	NR	1E-9		0.0281	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1492	chr11	119006787	119006788	rs79487987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q23.3	NR	rs79487987-A	NR	1E-11		0.0314	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1492	chr11	119006787	119006788	rs79487987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	11q23.3	NR	rs79487987-A	NR	1E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr11	119006787	119006788	rs79487987	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q23.3	NR	rs79487987-A	NR	8E-11		0.03	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1493	chr11	119028812	119028813	rs626776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q23.3	ABCG4	rs626776-G	0.651339	5E-15		0.018209733	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119028812	119028813	rs626776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q23.3	ABCG4	rs626776-G	0.651296	4E-12		0.016204413	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119028812	119028813	rs626776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.3	ABCG4	rs626776-C	0.348682	5E-12		0.016162816	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119029848	119029849	rs485030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q23.3	ABCG4	rs485030-C	0.6599	8E-9		0.02188607	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119030751	119030752	rs674424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	11q23.3	ABCG4	rs674424-C	0.7312	2E-9		0.0245625	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119040484	119040485	rs113575891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	11q23.3		rs113575891-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1493	chr11	119043744	119043745	rs561830	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q23.3	NR	rs561830-T	0.2518	5E-16		0.00216	[0.0016-0.0027] unit decrease	Affymetrix [NR] (imputed)	N
1493	chr11	119044534	119044535	rs150153921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q23.3	NLRX1	rs150153921-G	0.00945499999999999	1E-9		0.07070698	[0.048-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119053596	119053596	rs200343163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q23.3		rs200343163-CA	NR	1E-11		0.0302	[0.022-0.039] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1493	chr11	119055361	119055362	rs7929799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	11q23.3		rs7929799-G	0.656679	3E-9		0.0238836	[0.016-0.032] unit decrease	Illumina [13474682] (imputed)	N
1493	chr11	119060962	119060963	rs45535039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q23.3	CCDC153	rs45535039-C	0.2722	1E-57		0.065799	[0.058-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119062888	119062889	rs7945884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q23.3		rs7945884-T	NR	2E-13		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1493	chr11	119065043	119065044	rs11217176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q23.3		rs11217176-A	NR	5E-145		0.0525	[0.049-0.056] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1493	chr11	119065043	119065044	rs11217176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q23.3	NR	rs11217176-A	0.273071	7E-194		0.061409	[0.057-0.065] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1493	chr11	119065708	119065709	rs10750139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q23.3	CCDC153	rs10750139-C	0.520359	9E-15		0.01717428	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119070948	119070949	rs55771168	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs55771168-C	0.306418	8E-17				Affymetrix, Illumina [23467995] (imputed)	N
1493	chr11	119070948	119070949	rs55771168	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q23.3	NR	rs55771168-C	0.271613	6E-15		0.00689457	[0.005-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1493	chr11	119070948	119070949	rs55771168	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q23.3	NR	rs55771168-C	0.271613	8E-16		0.00812278	[0.0061-0.0102] unit increase	Affymetrix [16582965] (imputed)	N
1493	chr11	119073885	119073886	rs7104210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	CBL	rs7104210-G	0.271942	7E-76		0.0534179	[0.048-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119073885	119073886	rs7104210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	CBL	rs7104210-G	0.271928	4E-173		0.12135569	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119073885	119073886	rs7104210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs7104210-G	0.313737	1E-242				Affymetrix, Illumina [24588908] (imputed)	N
1493	chr11	119073885	119073886	rs7104210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	11q23.3	NR	rs7104210-T	0.537535	3E-48		0.054509	[0.047-0.062] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1493	chr11	119075322	119075323	rs4938637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	CBL	rs4938637-A	0.074452	6E-55		0.075635955	[0.066-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119075322	119075323	rs4938637	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q23.3	CBL	rs4938637-A	0.0742	5E-52		0.1059334	[0.092-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119077002	119077003	rs7108857	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	11q23.3	CBL	rs7108857-?	NR	4E-34		0.0532	[0.045-0.062] unit increase novel	Illumina [6108953] (imputed)	N
1493	chr11	119080036	119080037	rs2155380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.3		rs2155380-A	0.728	1E-63				Affymetrix [10369434] (imputed)	N
1493	chr11	119083317	119083318	rs36109901	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q23.3		rs36109901-A	0.728	6E-57				Affymetrix [10369434] (imputed)	N
1493	chr11	119083317	119083318	rs36109901	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.3	CBL	rs36109901-C	0.2722	3E-43		0.05652886	[0.048-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119089054	119089055	rs1893033	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	11q23.3	CBL	rs1893033-?	NR	2E-17		6.274	[4.83-7.72] unit increase (adjusted)	Affymetrix [603527]	N
1493	chr11	119094646	119094647	rs11217191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	CBL	rs11217191-A	0.197879	2E-46		0.0683723	[0.059-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119094646	119094647	rs11217191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q23.3	CBL	rs11217191-A	0.1979	5E-11		0.0302323	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119095760	119095761	rs11217192	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	11q23.3		rs11217192-?	0.2552	8E-8		0.006942	unit decrease	NR [6200000] (imputed)	N
1493	chr11	119095760	119095761	rs11217192	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	11q23.3		rs11217192-?	0.2552	7E-9		0.009262	unit decrease	NR [6200000] (imputed)	N
1493	chr11	119099085	119099086	rs11217196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs11217196-C	0.58752	5E-19				Affymetrix, Illumina [23472807] (imputed)	N
1493	chr11	119099523	119099523	rs757253787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q23.3	NR	rs757253787-T	0.27110500000000004	3E-9		0.00722654	[0.0047-0.0098] unit increase	Affymetrix [16582621] (imputed)	N
1493	chr11	119099523	119099523	rs757253787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q23.3	NR	rs757253787-T	0.27110500000000004	8E-9		0.00771411	[0.005-0.0105] unit increase	Affymetrix [16582614] (imputed)	N
1493	chr11	119099905	119099906	rs4938642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q23.3		rs4938642-C	NR	2E-14		0.0287	[0.021-0.036] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1493	chr11	119099905	119099906	rs4938642	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	11q23.3	CBL	rs4938642-C	NR	8E-11		4.73	[3.31-6.15] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1493	chr11	119114224	119114225	rs34286258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q23.3		rs34286258-C	NR	2E-12		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1493	chr11	119116602	119116603	rs7114172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q23.3	NR	rs7114172-C	0.275658	1E-14		0.015748	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1493	chr11	119120367	119120372	rs773502414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q23.3	CBL	rs773502414-T	0.141067	1E-12		0.0255239	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119120371	119120376	rs770971500	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q23.3	NR	rs770971500-C	0.238143	5E-9		0.00802418	[0.005-0.011] unit increase	Affymetrix [16585854] (imputed)	N
1493	chr11	119120371	119120376	rs770971500	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q23.3	NR	rs770971500-C	0.238143	3E-9		0.00991107	[0.0065-0.0134] unit increase	Affymetrix [16585866] (imputed)	N
1493	chr11	119121436	119121437	rs11217215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs11217215-G	0.311483	2E-15				Affymetrix, Illumina [24246363] (imputed)	N
1493	chr11	119130687	119130688	rs12277078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11q23.3		rs12277078-T	0.451427	4E-55		0.0525197	[0.046-0.059] unit increase	Illumina [13478928] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	11q23.3	CBL	rs68034047-C	0.221356	4E-22		0.026270475	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q23.3	CBL	rs68034047-C	0.221352	2E-24		0.027692512	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q23.3	CBL	rs68034047-C	0.221264	1E-17		0.026276842	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q23.3	CBL	rs68034047-C	0.221384	4E-17		0.022755956	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q23.3	CBL	rs68034047-C	0.221384	9E-19		0.023943875	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	11q23.3	CBL	rs68034047-C	0.2235	4E-15		0.03413034	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	11q23.3	CBL	rs68034047-C	0.2235	5E-17		0.0363603	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	11q23.3	CBL	rs68034047-C	0.2235	4E-10		0.02713001	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1493	chr11	119130933	119130934	rs68034047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	11q23.3	CBL	rs68034047-C	0.2235	2E-11		0.02908862	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1494	chr11	119150201	119150202	rs367801181	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	11q23.3		rs367801181-T	0.732222	4E-9		0.0284574	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1494	chr11	119152204	119152205	rs34775460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q23.3	CBL	rs34775460-C	0.3117	3E-32		0.04866929	[0.041-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1494	chr11	119185747	119185748	rs35929108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	MCAM	rs35929108-A	0.07871	1E-27		0.04909083	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1494	chr11	119189131	119189132	rs71484135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q23.3	NR	rs71484135-T	NR	1E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1494	chr11	119189584	119189585	rs2511842	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q23.3		rs2511842-T	0.024	2E-18				Affymetrix [10369434] (imputed)	N
1494	chr11	119189584	119189585	rs2511842	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.3		rs2511842-T	0.024	5E-14				Affymetrix [10369434] (imputed)	N
1494	chr11	119192955	119192956	rs7944487	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q23.3		rs7944487-A	0.685	1E-19				Affymetrix [10369434] (imputed)	N
1494	chr11	119203358	119203359	rs2511847	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	C1QTNF5	rs2511847-G	0.85734375	6E-18	(C1QTNF5, 7810_20_3)	0.2980096	[0.23-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1494	chr11	119207340	119207341	rs2248863	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	C1QTNF5	rs2248863-A	0.142	4E-21	(Complement C1q tumor necrosis factor-related protein 5, C1QTNF5.7810.20.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
1494	chr11	119207445	119207446	rs2248853	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF5	5,359 Icelandic ancestry individuals	NA	11q23.3		rs2248853-T	0.1362	2E-27		0.289457	[0.24-0.34] unit increase	Illumina [7506463] (imputed)	N
1494	chr11	119207927	119207928	rs6649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	RNF26	rs6649-T	0.149065	5E-25		0.033766255	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1494	chr11	119216554	119216555	rs4639950	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	11q23.3	C1QTNF5	rs4639950-?	0.1455	2E-16	(females)	7.619	[NR] unit decrease	Affymetrix [429783]	N
1494	chr11	119217310	119217311	rs883245	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11q23.3	MFRP	rs883245-?	NR	2E-8		0.0735	[0.048-0.099] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1494	chr11	119217632	119217633	rs45509899	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	11q23.3		rs45509899-T	0.06384	7E-6		0.06259	[0.035-0.09] unit increase	Affymetrix [15580782] (imputed)	N
1494	chr11	119217632	119217633	rs45509899	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q23.3	NR	rs45509899-T		4E-9		0.14	[0.1-0.18] unit increase	NR [NR]	N
1494	chr11	119229373	119229374	rs7937208	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q23.3	NR	rs7937208-T		7E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
1494	chr11	119235403	119235404	rs2195525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q23.3		rs2195525-T	NR	7E-14		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1494	chr11	119235403	119235404	rs2195525	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q23.3	NR	rs2195525-T	0.52	2E-18		0.0163	[0.013-0.02] unit decrease	NR [NR]	N
1494	chr11	119235403	119235404	rs2195525	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	11q23.3	USP2	rs2195525-C		6E-9		0.031	[0.021-0.041] mg/dl increase	NR [NR] (imputed)	N
1494	chr11	119235403	119235404	rs2195525	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	11q23.3	USP2	rs2195525-T	0.508	5E-8	(EA)	0.022142857	[0.014-0.03] unit decrease	Illumina [1986983] (imputed)	N
1494	chr11	119235403	119235404	rs2195525	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	11q23.3	USP2	rs2195525-T	0.52	2E-6		0.025	[0.015-0.035] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1494	chr11	119236750	119236751	rs2195526	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q23.3	NR	rs2195526-C		6E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
1494	chr11	119238380	119238381	rs10892354	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	11q23.3	USP2	rs10892354-T	0.38	3E-13		0.030101	[0.022-0.038] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1494	chr11	119238454	119238455	rs11217257	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q23.3	USP2	rs11217257-A	0.6677	3E-15		0.0274	[0.021-0.034] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1494	chr11	119238454	119238455	rs11217257	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	11q23.3	NR	rs11217257-A	0.6695	2E-10	(women)	0.0321	[0.022-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1494	chr11	119269957	119269958	rs139137459	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	11q23.3	USP2-AS1	rs139137459-G	0.996	3E-8		0.0906	[0.059-0.122] unit decrease	Affymetrix [11535925] (imputed)	N
1495	chr11	119326725	119326726	rs6589750	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q23.3	USP2-AS1	rs6589750-A	0.6315	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1495	chr11	119362138	119362139	rs565615761	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USP2-AS1	rs565615761-?	NR	2E-9		1.48893	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1495	chr11	119362138	119362139	rs565615761	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USP2-AS1	rs565615761-?	NR	1E-10	(male)	3.91911	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1495	chr11	119384213	119384214	rs606151	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11q23.3	USP2-AS1	rs606151-G	0.6889	4E-6		0.0051	[0.0029-0.0073] unit increase	Affymetrix [~ 7740000] (imputed)	N
1495	chr11	119400816	119400817	rs10892381	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	11q23.3	NR	rs10892381-C		4E-7		0.2412	[0.15-0.33] SD units decrease	NR [10700000] (imputed)	N
1496	chr11	119430265	119430266	rs12274984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q23.3	Intergenic	rs12274984-A	0.299	2E-8	(MTAG)	0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1496	chr11	119440065	119440066	rs10790313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.3	Intergenic	rs10790313-A	0.3526	1E-11	(MTAG)	0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1496	chr11	119440065	119440066	rs10790313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q23.3	Intergenic	rs10790313-G	0.6474	1E-9		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1496	chr11	119440065	119440066	rs10790313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.3	Intergenic	rs10790313-A	0.3523	1E-10	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1496	chr11	119462820	119462821	rs11217335	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q23.3		rs11217335-?	NR	1E-6		1.1779597	[1.10228015052172-1.25883524054383]	Illumina [7827597] (imputed)	N
1496	chr11	119492273	119492274	rs4514434	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.3	NR	rs4514434-?	NR	9E-6		4.43	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1496	chr11	119526135	119526136	rs4271390	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	11q23.3	PVRL1, LOC100499227	rs4271390-T	0.25	1E-6		1.2	[NR]	Illumina [7659573] (imputed)	N
1497	chr11	119592622	119592623	rs143535541	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	11q23.3	NR	rs143535541-?	NR	3E-6		0.8714	[0.54-1.2] unit increase	Illumina [at least 560000] (imputed)	N
1497	chr11	119614710	119614711	rs150038731	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistance to antihypertensive treatment in hypertension	931 European ancestry cases, 228 African American ancestry cases, 5,266 European ancestry controls, 1,817 African American ancestry controls	NA	11q23.3	LOC102724301, TRIM29	rs150038731-A	NR	2E-6		1.43	[1.23-1.65]	Affymetrix, Illumina [NR] (imputed)	N
1497	chr11	119619912	119619913	rs117807646	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	11q23.3	NR	rs117807646-?	NR	4E-6	(Native Hawaiian)	0.7472	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1497	chr11	119634736	119634737	rs11217480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q23.3	Intergenic	rs11217480-T	0.6699	4E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1497	chr11	119638087	119638088	rs10750165	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	11q23.3	LOC101929156	rs10750165-A		7E-6		1.5241	[0.86-2.19] unit increase	Illumina [7576458] (imputed)	N
1497	chr11	119640426	119640427	rs34809912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.3	Intergenic	rs34809912-A	0.3675	3E-9	(MTAG)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1497	chr11	119663943	119663944	rs73006788	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11q23.3		rs73006788-C	NR	1E-6	(GLM)	3.4802	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1497	chr11	119663943	119663944	rs73006788	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	11q23.3		rs73006788-C	NR	1E-6	(GLM)	13.0042	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1498	chr11	119673721	119673722	rs11217512	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q23.3	NR	rs11217512-C	0.181	2E-6	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
1498	chr11	119677954	119677955	rs7926623	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q23.3	NR	rs7926623-A	0.225	4E-7	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
1498	chr11	119678444	119678445	rs7945067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q23.3	NR	rs7945067-C	0.738821	2E-9		0.00569319	[0.0038-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1498	chr11	119678444	119678445	rs7945067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q23.3	NR	rs7945067-C	0.738821	6E-7		0.0051529	[0.0031-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
1498	chr11	119697181	119697182	rs473219	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q23.3	NR	rs473219-?	NR	1E-8	(left basal forebrain)			NR [9227495] (imputed)	N
1498	chr11	119713256	119713257	rs471909	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	11q23.3	NR	rs471909-?	NR	3E-6	(Simpson's diversity index)	326588.0	[190121.24-463054.76] unit increase	Illumina [5293637] (imputed)	N
1498	chr11	119742278	119742279	rs11217547	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	11q23.3	NR	rs11217547-?	NR	3E-6		0.0821697	[0.048-0.117] unit increase	NR [13958389] (imputed)	N
1498	chr11	119753354	119753355	rs590648	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	11q23.3	LOC102724301	rs590648-T	0.314692	3E-8		0.0191461	[0.012-0.026] unit decrease	NR [16426330] (imputed)	N
1499	chr11	119818621	119818622	rs10892501	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs10892501-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1499	chr11	119818621	119818622	rs10892501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q23.3		rs10892501-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1499	chr11	119852276	119852277	rs147913622	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q23.3	RP11-831A10.2	rs147913622-A	0.9897	9E-7		0.1881	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1499	chr11	119853068	119853069	rs7129717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q23.3	NR	rs7129717-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1499	chr11	119861740	119861741	rs11217615	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	11q23.3	NR	rs11217615-?	NR	1E-9	(VPS10 domain-containing receptor SorCS2)			Illumina [514227]	N
1499	chr11	119923913	119923914	rs142100881	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	11q23.3		rs142100881-G	NR	8E-6		0.16	[0.07-0.36]	Illumina [7488175] (imputed)	N
1500	chr11	120011879	120011880	rs61900473	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	11q23.3	TRIM29	rs61900473-G	0.95	3E-6		1.92		Illumina [8974355] (imputed)	N
1500	chr11	120026747	120026748	rs2084898	22990015	Arning A	2012-09-20	Blood	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	11q23.3	TRIM29	rs2084898-A	0.126	4E-7	(Nonvascular)	3.04	[NR]	Illumina [334581]	N
1500	chr11	120026747	120026748	rs2084898	22990015	Arning A	2012-09-20	Blood	A genome-wide association study identifies a gene network of ADAMTS genes in the predisposition to pediatric stroke.	Stroke (pediatric)	270 European ancestry trios	NA	11q23.3	TRIM29	rs2084898-A	0.126	4E-6	(All)	2.37	[NR]	Illumina [334581]	N
1500	chr11	120040441	120040442	rs2444240	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	11q23.3	TRIM29	rs2444240-T	NR	4E-7		0.0365	[0.022-0.050] mm decrease	Illumina [1704858] (imputed)	N
1500	chr11	120055402	120055403	rs12792820	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	11q23.3	TRIM29, OAF	rs12792820-?	0.30599999999999994	1E-6		1.1232735	[1.07-1.18]	Affymetrix, Illumina [7701827] (imputed)	N
1500	chr11	120056415	120056416	rs2444239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OAF	5,361 Icelandic ancestry individuals	NA	11q23.3		rs2444239-A	0.4628	5E-73		0.322778	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
1500	chr11	120057342	120057343	rs508205	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	11q23.3	NR	rs508205-A	0.56	8E-13		0.0131	[0.0095-0.0167] unit increase	NR [NR]	N
1500	chr11	120057342	120057343	rs508205	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	11q23.3	OAF	rs508205-A	NR	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1500	chr11	120057342	120057343	rs508205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	NR	rs508205-A	0.559	8E-50	(Out at first protein homolog, OAF.6414.8.3)	0.36	[0.32-0.4] unit increase	Affymetrix [10572788] (imputed)	N
1500	chr11	120058622	120058623	rs12790943	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	11q23.3	OAF	rs12790943-T	0.421	3E-8	(EA)	0.011	[0.0071-0.0149] unit increase	NR [12082474] (imputed)	N
1500	chr11	120058622	120058623	rs12790943	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	11q23.3	OAF	rs12790943-T	0.422	1E-11		0.0136538	[0.0097-0.0176] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1500	chr11	120058622	120058623	rs12790943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.3		rs12790943-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1501	chr11	120067081	120067082	rs896693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q23.3		rs896693-A	NR	5E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1501	chr11	120067081	120067082	rs896693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q23.3		rs896693-A	NR	3E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1501	chr11	120067081	120067082	rs896693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q23.3		rs896693-A	NR	4E-8		0.0118	[0.0075-0.0161] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1501	chr11	120067081	120067082	rs896693	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q23.3	OAF	rs896693-A	0.422	2E-9		0.166	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
1501	chr11	120076115	120076116	rs562966	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	11q23.3	NR	rs562966-?	NR	9E-42	(IL-17E)			Illumina [~ 4000000] (imputed)	N
1501	chr11	120098328	120098329	rs117554512	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	OAF	rs117554512-T	0.086	2E-56	(Out at first protein homolog, OAF.6414.8.3)	0.68	[0.6-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1501	chr11	120099367	120099368	rs692804	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	OAF	rs692804-T	0.1281407	1E-56	(Interleukin-25)	1.011	[0.89-1.13] unit increase	Affymetrix [509946]	N
1501	chr11	120099678	120099679	rs2508490	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OAF	5,361 Icelandic ancestry individuals	NA	11q23.3		rs2508490-G	0.1873	6E-136		0.547997	[0.5-0.59] unit increase	Illumina [7506463] (imputed)	N
1501	chr11	120099678	120099679	rs2508490	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q23.3	OAF	rs2508490-A	0.798	6E-194	(Interleukin-25, IL25.4137.57.2)	0.82	[0.76-0.88] unit decrease	Affymetrix [10572788] (imputed)	N
1501	chr11	120101091	120101092	rs2845705	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs2845705-T	0.8109375	2E-84	(OAF, 6414_8_3)	0.5854669	[0.53-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
1501	chr11	120101091	120101092	rs2845705	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q23.3	NR	rs2845705-T	0.8109375	2E-317	(IL25, 4137_57_2)	1.0817688	[1.03-1.13] unit decrease	Illumina [> 1000000] (imputed)	N
1501	chr11	120114420	120114421	rs2847500	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	11q23.3		rs2847500-?	NR	3E-13		0.022548	[0.016-0.029] unit decrease	NR [6912294] (imputed)	N
1501	chr11	120114420	120114421	rs2847500	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	11q23.3		rs2847500-G	0.876497	1E-13		0.022	[0.016-0.028] unit decrease	NR [7250403] (imputed)	N
1501	chr11	120114420	120114421	rs2847500	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	11q23.3	NR	rs2847500-A	0.124391	8E-13		0.021129	[0.015-0.027] unit decrease	Affymetrix [16668957] (imputed)	N
1501	chr11	120114420	120114421	rs2847500	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q23.3	POU2F3	rs2847500-A	0.135	3E-6		1.14	[1.08-1.21]	Illumina [up to 4778154] (imputed)	N
1501	chr11	120144570	120144571	rs138488120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.3	NR	rs138488120-?	NR	3E-6		4.697	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1501	chr11	120159051	120159052	rs7121784	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q23.3	POU2F3	rs7121784-A	0.1527638	5E-12	(EA, Interleukin-25)	0.4245	[0.31-0.54] unit increase	Affymetrix [509946]	N
1501	chr11	120187432	120187433	rs7102217	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	11q23.3	TMEM136	rs7102217-T	0.343625	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1502	chr11	120194356	120194357	rs12421941	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q23.3	NR	rs12421941-A	0.7907	1E-8	(East Asian)	0.3139	[0.21-0.42] unit decrease	Illumina [6200000] (imputed)	N
1502	chr11	120195701	120195702	rs12290699	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	11q23.3	TMEM136	rs12290699-C	0.2553	2E-8		1.0662118	NR	Affymetrix, Illumina [NR] (imputed)	N
1502	chr11	120198092	120198093	rs1893261	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11q23.3	TLCD5, ARHGEF12, TMEM136	rs1893261-A	NR	1E-24		0.0758	unit increase	Illumina [15409056] (imputed)	N
1502	chr11	120198092	120198093	rs1893261	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	11q23.3	TMEM136	rs1893261-?	NR	3E-8		0.0282465	[0.018-0.038] unit increase	Illumina [4804024] (imputed)	N
1502	chr11	120198092	120198093	rs1893261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q23.3		rs1893261-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1502	chr11	120198727	120198728	rs11827818	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	TMEM136, ARHGEF12	rs11827818-A		6E-7		0.23	[0.13-0.33] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120199079	120199080	rs11823300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q23.3		rs11823300-A	NR	6E-12		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1502	chr11	120199551	120199553	rs67336059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q23.3		rs67336059-A	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1502	chr11	120199713	120199714	rs111952858	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q23.3		rs111952858-?	NR	4E-9		0.0150086	[0.01-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1502	chr11	120207404	120207405	rs7126413	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	11q23.3	ARHGEF12	rs7126413-A	NR	3E-13		0.888607	[0.86-0.92]	Illumina [NR] (imputed)	N
1502	chr11	120207404	120207405	rs7126413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q23.3	ARHGEF12	rs7126413-G	0.375864	2E-17		0.019764015	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr11	120207404	120207405	rs7126413	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	11q23.3	ARHGEF12	rs7126413-G	NR	1E-11		1.098901	[1.06-1.12]	Affymetrix [at least 665500] (imputed)	N
1502	chr11	120212422	120212423	rs10502235	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10502235-A		4E-7		0.23	[0.13-0.33] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120212600	120212601	rs61528732	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs61528732-T		6E-6		0.4	[0.22-0.58] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120215842	120215843	rs12361632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q23.3		rs12361632-G	NR	2E-19		0.0184	[0.014-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1502	chr11	120215842	120215843	rs12361632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q23.3		rs12361632-G	NR	2E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1502	chr11	120217973	120217977	rs577381332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q23.3	ARHGEF12	rs577381332-C	0.384923	7E-20		0.02114109	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr11	120217973	120217977	rs577381332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q23.3	ARHGEF12	rs577381332-C	0.384775	4E-10		0.014252808	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr11	120221067	120221068	rs1812974	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	11q23.3	ARHGEF12	rs1812974-T	NR	1E-9		1.2019	[1.14-1.26]	Illumina [NR] (imputed)	N
1502	chr11	120221067	120221068	rs1812974	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs1812974-T		4E-7		0.23	[0.13-0.33] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120221986	120221987	rs12785387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q23.3		rs12785387-T	NR	3E-28		0.0182	[0.015-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1502	chr11	120221986	120221987	rs12785387	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs12785387-T		2E-8		0.28	[0.18-0.38] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120222210	120222211	rs12787285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs12787285-C	0.363059	1E-18				Affymetrix, Illumina [24588908] (imputed)	N
1502	chr11	120222210	120222211	rs12787285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q23.3	NR	rs12787285-C	0.383956	3E-18		0.017174	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1502	chr11	120222210	120222211	rs12787285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs12787285-C	0.371313	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1502	chr11	120222474	120222475	rs56329702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q23.3		rs56329702-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1502	chr11	120224649	120224650	rs10892564	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q23.3	ARHGEF12	rs10892564-A	0.61	4E-6		0.03	[0.018-0.042] unit decrease	Affymetrix [7947838] (imputed)	N
1502	chr11	120224788	120224789	rs11824032	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11824032-A		3E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120228988	120228989	rs4938802	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4938802-A		4E-7		0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120233157	120233158	rs10790380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q23.3	NR	rs10790380-A	0.389926	6E-13		0.013546	[0.0099-0.0172] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1502	chr11	120233563	120233564	rs7924975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q23.3	ARHGEF12	rs7924975-C	0.388471	9E-11		0.014695623	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1502	chr11	120233563	120233564	rs7924975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q23.3	NR	rs7924975-C	0.369394	7E-12				Affymetrix, Illumina [24649327] (imputed)	N
1502	chr11	120233625	120233626	rs7924772	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	11q23.3	NR	rs7924772-?	NR	4E-8	(fixed effect)			Illumina [~ 9700000] (imputed)	N
1502	chr11	120233625	120233626	rs7924772	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	11q23.3	ARHGEF12	rs7924772-G	0.387	2E-9				Affymetrix [28000000] (imputed)	N
1502	chr11	120235559	120235560	rs10892565	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892565-T		4E-7		0.23	[0.13-0.33] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120239936	120239937	rs11217843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q23.3		rs11217843-G	NR	8E-15		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1502	chr11	120239936	120239937	rs11217843	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217843-A		2E-7		0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120241922	120241923	rs10892566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q23.3		rs10892566-C	0.268472	4E-15		0.0177876	[0.013-0.022] unit decrease	Illumina [13479295] (imputed)	N
1502	chr11	120241922	120241923	rs10892566	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q23.3	ARHGEF12	rs10892566-?	NR	4E-18		0.027882889	[0.022-0.034] unit decrease	Illumina [27896057] (imputed)	N
1502	chr11	120242347	120242348	rs12807097	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs12807097-A		1E-7		0.25	[0.15-0.35] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120244191	120244192	rs10892567	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892567-A		9E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120244576	120244577	rs7126328	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs7126328-T		4E-6		0.17	[0.092-0.248] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120248341	120248342	rs12270397	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs12270397-T		1E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	11q23.3	ARHGEF12	rs58073046-A	NR	4E-19		0.84139	[0.8-0.88]	Affymetrix, Illumina [14822926] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11q23.3	ARHGEF12	rs58073046-A	0.88	7E-23				Affymetrix, Illumina [8002429] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	11q23.3	ARHGEF12	rs58073046-G	0.12	1E-21		1.1627907	NR	Affymetrix, Illumina [8002429] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	11q23.3	ARHGEF12	rs58073046-G	0.12	1E-7		1.1363636	NR	Affymetrix [at least 8002429] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	11q23.3	ARHGEF12	rs58073046-G	0.122	3E-10		0.256	[0.18-0.34] mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	11q23.3	ARHGEF12	rs58073046-A	NR	2E-12		1.1764705	[1.12-1.22]	Affymetrix [up to 40000000] (imputed)	N
1502	chr11	120248492	120248493	rs58073046	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	11q23.3	ARHGEF12	rs58073046-?	NR	6E-15		0.19	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1502	chr11	120254683	120254684	rs1892894	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs1892894-T		9E-6		0.15	[0.091-0.209] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120256336	120256337	rs17123861	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs17123861-T		8E-8		0.25	[0.15-0.35] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120257494	120257495	rs10790381	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10790381-A		8E-8		0.25	[0.15-0.35] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120268021	120268022	rs4938803	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4938803-A		8E-8		0.25	[0.15-0.35] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120270169	120270170	rs11217857	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217857-A		1E-7		0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120270248	120270249	rs10892569	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892569-A		7E-8		0.25	[0.15-0.35] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120270252	120270253	rs10750172	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10750172-A		8E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120270708	120270709	rs7118391	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs7118391-T		9E-6		0.16	[0.082-0.238] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120273596	120273597	rs4245213	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4245213-A		4E-6		0.17	[0.092-0.248] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120274352	120274353	rs4938806	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4938806-A		8E-6		0.16	[0.082-0.238] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120278358	120278359	rs6589812	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs6589812-T		7E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120278687	120278688	rs7937612	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs7937612-T		8E-6		0.16	[0.1-0.22] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120288367	120288368	rs10750173	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10750173-T		9E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120288371	120288372	rs10790382	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10790382-T		8E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120288943	120288944	rs10892574	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	11q23.3	ARHGEF12	rs10892574-C	NR	1E-11		1.12457	[1.09-1.16]	Illumina [NR] (imputed)	N
1502	chr11	120289698	120289699	rs12794618	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	11q23.3	ARHGEF12	rs12794618-C	NR	2E-9		0.18	[0.12-0.24] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1502	chr11	120289698	120289699	rs12794618	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs12794618-T		8E-8		0.25	[0.15-0.35] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120291136	120291137	rs10892575	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892575-C		2E-7		0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120292476	120292477	rs76693355	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs76693355-T		5E-9		0.35	[0.23-0.47] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120293137	120293138	rs11217863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q23.3		rs11217863-A	NR	3E-13		0.023	[0.017-0.029] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1502	chr11	120293137	120293138	rs11217863	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q23.3	ARHGEF12	rs11217863-A	0.1162	1E-19		0.0268	[0.021-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
1502	chr11	120293137	120293138	rs11217863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q23.3		rs11217863-?	NR	7E-30				NR [~ 8900000] (imputed)	N
1502	chr11	120293137	120293138	rs11217863	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q23.3	ARHGEF12	rs11217863-G	0.884	3E-29		0.224	[0.18-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1502	chr11	120293137	120293138	rs11217863	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	ARHGEF12	rs11217863-A		6E-8		0.3	[0.18-0.42] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120293489	120293490	rs6589813	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs6589813-A		9E-6		0.16	[0.082-0.238] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120294003	120294004	rs11823264	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11823264-A		1E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120294422	120294423	rs10892576	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892576-T		4E-6		0.17	[0.092-0.248] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120294860	120294861	rs7115714	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs7115714-A		7E-6		0.16	[0.082-0.238] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120299706	120299707	rs7129944	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs7129944-T		9E-8		0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120300803	120300804	rs11217866	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217866-A		1E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1502	chr11	120309035	120309036	rs7951250	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q23.3	NR	rs7951250-G	0.3914	3E-8				NR [9056863] (imputed)	N
1502	chr11	120311156	120311157	rs77216358	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q23.3	NR	rs77216358-?	NR	1E-6		4.825	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1502	chr11	120311156	120311157	rs77216358	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	11q23.3	ARHGEF12	rs77216358-A	0.96	9E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1502	chr11	120311156	120311157	rs77216358	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs77216358-A		7E-6		0.47	[0.25-0.69] unit decrease	Illumina [NR] (imputed)	N
1502	chr11	120311197	120311198	rs4936518	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4936518-A		2E-8		0.27	[0.17-0.37] unit decrease	Illumina [NR] (imputed)	N
1503	chr11	120325547	120325548	rs11217874	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217874-A		1E-8		0.27	[0.17-0.37] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120325558	120325559	rs11217875	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217875-A		1E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120326276	120326277	rs476636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q23.3		rs476636-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1503	chr11	120331700	120331701	rs4938807	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs4938807-A		1E-7		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120332694	120332694	rs547728071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	11q23.3		rs547728071-TACCAGC	NR	4E-8		0.0761	[0.049-0.103] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1503	chr11	120334679	120334680	rs11600200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	11q23.3		rs11600200-G	NR	2E-8		0.0772	[0.05-0.104] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1503	chr11	120337711	120337712	rs80040504	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q23.3		rs80040504-A	0.04	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
1503	chr11	120337711	120337712	rs80040504	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q23.3		rs80040504-A	0.04	7E-14		7.49	z score increase	Affymetrix [9061022] (imputed)	N
1503	chr11	120337711	120337712	rs80040504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	11q23.3		rs80040504-A	NR	2E-8		0.1708	[0.11-0.23] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1503	chr11	120337711	120337712	rs80040504	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q23.3	NR	rs80040504-A	0.0459	4E-15				NR [9056863] (imputed)	N
1503	chr11	120337711	120337712	rs80040504	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q23.3	NR	rs80040504-A		5E-17		0.29	[0.23-0.35] unit increase	NR [NR]	N
1503	chr11	120337711	120337712	rs80040504	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs80040504-A		9E-6		0.47	[0.25-0.69] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q23.3		rs2305013-T	0.05	2E-13		7.35	z score increase	Affymetrix [9061022] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q23.3	NR	rs2305013-A	0.8482	6E-10	(East Asian)	0.5884	[0.4-0.77] unit decrease	Illumina [6200000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	11q23.3	NR	rs2305013-A	0.852	2E-6	(East Asian)	0.302	[0.18-0.43] unit decrease	Illumina [6200000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q23.3	NR	rs2305013-A	0.852	1E-8	(East Asian)	0.382	[0.25-0.51] unit decrease	Illumina [6200000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	11q23.3	NR	rs2305013-A	0.852	5E-6	(East Asian)	0.0796	[0.045-0.114] unit decrease	Illumina [6200000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	11q23.3	NR	rs2305013-A	0.852	2E-6	(East Asian)	0.2861	[0.17-0.4] unit decrease	Illumina [6200000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q23.3	ARHGEF12	rs2305013-A	0.9498	5E-25		0.322	[0.26-0.38] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1503	chr11	120340059	120340060	rs2305013	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	intergenic	rs2305013-A		7E-6		0.39	[0.21-0.57] unit decrease	Illumina [NR] (imputed)	N
1503	chr11	120340382	120340383	rs11217878	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11q23.3	ARHGEF12	rs11217878-?	NR	4E-23		0.1688	[0.14-0.2] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1503	chr11	120340382	120340383	rs11217878	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	11q23.3	ARHGEF12	rs11217878-?	NR	2E-11		1.1443079	[1.10010320705662-1.19028883957134]	Affymetrix [up to 40000000] (imputed)	N
1503	chr11	120340382	120340383	rs11217878	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q23.3	ARHGEF12	rs11217878-G	0.8364	6E-28		0.205	[0.17-0.24] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1503	chr11	120340382	120340383	rs11217878	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs11217878-A		8E-8		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120346359	120346360	rs2276035	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs2276035-A		9E-8		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120346359	120346360	rs2276035	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	11q23.3	ARHGEF12	rs2276035-A	0.16	8E-6		1.18	[NR]	Illumina [7594768] (imputed)	N
1503	chr11	120348583	120348584	rs199800298	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	11q23.3	ARHGEF12	rs199800298-?	NR	1E-21		0.13	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1503	chr11	120348583	120348584	rs10892583	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	genic	rs10892583-A		2E-6		0.2	[0.12-0.28] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120361393	120361394	rs56693116	25637523	Springelkamp H	2015-01-30	Hum Mol Genet	ARHGEF12 influences the risk of glaucoma by increasing intraocular pressure.	Intraocular pressure	8,015 individuals	7,471 individuals	11q23.3	intergenic	rs56693116-T		1E-6		0.24	[0.14-0.34] unit increase	Illumina [NR] (imputed)	N
1503	chr11	120423594	120423595	rs2508655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q23.3	Intergenic	rs2508655-G	0.7142	6E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1503	chr11	120423600	120423601	rs12278740	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.3	Intergenic	rs12278740-T	0.2751	5E-10	(MTAG)	0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1503	chr11	120426507	120426508	rs2248558	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q23.3	GRIK4	rs2248558-?		4E-6				Illumina [4322238] (imputed)	N
1503	chr11	120441646	120441647	rs4938815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q23.3	Intergenic	rs4938815-T	0.705	2E-10	(MTAG)	0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1503	chr11	120441646	120441647	rs4938815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.3		rs4938815-T	0.7041	3E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1503	chr11	120441646	120441647	rs4938815	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q23.3	Intergenic	rs4938815-T	0.7041	7E-10	(MTAG)	0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1503	chr11	120441766	120441767	rs11217917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q23.3		rs11217917-C	0.7047	3E-8	(conditional-joint)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1504	chr11	120470736	120470737	rs151336980	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	11q23.3	NR	rs151336980-T	0.03	8E-6		1.78	1.38-2.29	NR [8814543] (imputed)	N
1504	chr11	120500717	120500718	rs74888189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q23.3	GRIK4	rs74888189-T	0.959	1E-6	(AA)	0.331	NR unit increase	Illumina [NR] (imputed)	N
1504	chr11	120503215	120503216	rs79229131	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q23.3	GRIK4	rs79229131-G	0.959	1E-6	(AA)	0.332	NR unit increase	Illumina [NR] (imputed)	N
1504	chr11	120504566	120504567	rs56144287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	11q23.3	GRIK4	rs56144287-A	0.959	1E-6	(AA)	0.333	NR unit increase	Illumina [NR] (imputed)	N
1504	chr11	120520628	120520629	rs4245040	23728934	Yang L	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	11q23.3	GRIK4	rs4245040-?	NR	7E-6				Affymetrix [656051]	N
1504	chr11	120524883	120524884	rs1893907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q23.3	Intergenic	rs1893907-C	0.6313	7E-9	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1504	chr11	120524883	120524884	rs1893907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q23.3	Intergenic	rs1893907-G	0.3687	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1504	chr11	120577061	120577062	rs151321288	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	11q23.3		rs151321288-A	0.01	3E-8				NR [NR] (imputed)	N
1504	chr11	120577061	120577062	rs151321288	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	11q23.3		rs151321288-A	0.01	7E-6		0.81	[0.4-1.22] unit increase	NR [NR] (imputed)	N
1505	chr11	120599847	120599848	rs141198455	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q23.3		rs141198455-?	NR	4E-6		1.1728362	[1.09625776748205-1.25476390997233]	Illumina [7827597] (imputed)	N
1506	chr11	120809459	120809460	rs12797755	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	11q23.3	GRIK4	rs12797755-?	NR	8E-6	(Digit Span Forward)			Illumina [up to 563855]	N
1507	chr11	120976427	120976428	rs504626	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	11q23.3	TECTA	rs504626-G	0.51	4E-6	(adjusted for severity)	1.1764705	[1.11-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1508	chr11	120989334	120989335	rs612969	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	11q23.3		rs612969-G	NR	5E-11		1.05106		Affymetrix, Illumina [62056310] (imputed)	N
1508	chr11	121016723	121016724	rs148619105	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	11q23.3	TECTA	rs148619105-?	NR	1E-7		1.8587084	[1.47-2.33]	Illumina [241551]	N
1509	chr11	121160059	121160060	rs1560409	31904872	Chou WC	2020-01-06	Int J Cancer	A Functional Variant Near XCL1 Gene Improves Breast Cancer Survival via Promoting Cancer Immunity.	Survival in breast cancer (estrogen-receptor positive)	953 Taiwanese individuals	NA	11q23.3	intergenic	rs1560409-?		2E-6				Affymetrix [632566] (imputed)	N
1509	chr11	121198651	121198652	rs139851679	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	11q24.1	intergenic	rs139851679-A	8.0E-4	7E-6		4.11566	NR	Affymetrix, Illumina [30341632] (imputed)	N
1509	chr11	121204600	121204601	rs4936613	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	11q24.1	SC5DL	rs4936613-?	NR	6E-6				Affymetrix, Illumina [~ 1300000]	N
1509	chr11	121206448	121206449	rs116875324	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	11q24.1	NR	rs116875324-T	0.05	9E-6		0.229	[0.13-0.33] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1509	chr11	121206661	121206662	rs7945404	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	11q24.1	SC5DL	rs7945404-T	0.92	5E-6		1.91	[1.09-2.73] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1509	chr11	121215123	121215124	rs10892733	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		11q24.1	NR	rs10892733-T	0.706353	6E-6		1.1235955	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1510	chr11	121243715	121243716	rs72991	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	11q24.1	intergenic	rs72991-?	0.25	5E-7	(CSJC, RF+)	2.45	[NR] unit decrease	Illumina [534053]	N
1510	chr11	121264273	121264274	rs117916513	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	11q24.1	NR	rs117916513-G		4E-7		0.502	[0.31-0.7] SD units increase	NR [10700000] (imputed)	N
1511	chr11	121426206	121426207	rs556349	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q24.1	SORL1	rs556349-G	0.669166135384426	5E-7	(G_Dialister_HB)	0.266505	[0.16-0.37] unit increase	Illumina [7711310] (imputed)	N
1511	chr11	121426206	121426207	rs556349	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	11q24.1	SORL1	rs556349-T	0.325772857	6E-6		0.15757	unit decrease	Illumina [6969139] (imputed)	N
1511	chr11	121426206	121426207	rs556349	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	11q24.1	SORL1	rs556349-T	0.325772857	2E-6		0.152643	[0.089-0.216] unit decrease	Illumina [6969139] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q24.1		rs11218343-T	0.95709	1E-9		47.98181	z score increase	NR [6814003]	N
1511	chr11	121435586	121435587	rs11218343	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	11q24.1		rs11218343-?	NR	1E-13				Illumina [NR] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	11q24.1	SORL1	rs11218343-?	NR	1E-10		1.2820514	[1.37-1.19]	Affymetrix [up to 7055881] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	11q24.1	SORL1	rs11218343-C	NR	3E-6		0.007732	NR unit decrease	Affymetrix [10847151] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	11q24.1	SORL1	rs11218343-C	0.03743	1E-11		6.79	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	11q24.1	SORL1	rs11218343-C	NR	6E-11		6.55	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	11q24.1	NR	rs11218343-?	NR	2E-6		1.06359	NR	Affymetrix [7795605] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	11q24.1	NR	rs11218343-?	NR	1E-9		1.0624738		Affymetrix [7795605] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	11q24.1	SORL1	rs11218343-T	0.96	9E-6		1.3	[1.16-1.45]	NR [NR]	N
1511	chr11	121435586	121435587	rs11218343	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	11q24.1	SORL1	rs11218343-T	0.961	1E-14		1.2987	[1.22-1.39]	Illumina [7055881] (imputed)	N
1511	chr11	121435586	121435587	rs11218343	23565137	Miyashita A	2013-04-02	PLoS One	SORL1 is genetically associated with late-onset Alzheimer's disease in Japanese, Koreans and Caucasians.	Alzheimer's disease (late onset)	891 Japanese ancestry cases, 844 Japanese ancestry controls	1,224 East Asian ancestry cases, 2,114 East Asian ancestry controls, 11,840 European ancestry cases, 10,931 European ancestry controls	11q24.1	SORL1	rs11218343-?	0.96	2E-9		1.23	[1.15-1.33]	Affymetrix [5877918] (imputed)	N
1511	chr11	121440230	121440231	rs7118902	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q24.1	SORL1	rs7118902-A	0.305795730779355	4E-9	(G_Dialister_HB)	0.308888	[0.21-0.41] unit decrease	Illumina [7711310] (imputed)	N
1511	chr11	121447187	121447188	rs4936637	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q24.1	SORL1	rs4936637-?	NR	8E-16		0.631	[0.47-0.79] unit decrease	Affymetrix [11100000] (imputed)	N
1511	chr11	121497883	121497884	rs10892761	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11q24.1	SORL1	rs10892761-C	0.427	1E-8		0.0059	[0.0039-0.0079] unit increase	Affymetrix [~ 7740000] (imputed)	N
1511	chr11	121497883	121497884	rs10892761	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm birth)	916 pre-term birth neonates, 935 term birth neonates	243 pre-term birth neonates, 149 term birth neonates	11q24.1	SORL1	rs10892761-?	0.64	3E-6		1.37	[NR]	Affymetrix [797196]	N
1511	chr11	121501405	121501406	rs10790449	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	11q24.1	SORL1	rs10790449-C	0.463	6E-6		4.532	NR z score increase	Affymetrix [11141077] (imputed)	N
1511	chr11	121501405	121501406	rs10790449	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	11q24.1	SORL1	rs10790449-C	0.465	7E-9		0.0147	[0.0097-0.0197] unit increase	Illumina [~ 250000] (imputed)	N
1512	chr11	121530887	121530888	rs540860	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q24.1	NR	rs540860-G	0.543	6E-12		0.017608598	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
1512	chr11	121533000	121533001	rs1783832	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q24.1		rs1783832-G	0.431	2E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1512	chr11	121534937	121534938	rs647905	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q24.1	NR	rs647905-T	0.5409	3E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1512	chr11	121536010	121536011	rs568599	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q24.1	SORL1	rs568599-C	0.5401	3E-10		0.012652696	[0.0087-0.0166] unit increase	Affymetrix [11514654] (imputed)	N
1512	chr11	121536010	121536011	rs568599	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q24.1	NR	rs568599-C	0.536	5E-17		0.00906594	[0.0069-0.0112] unit increase	NR [9732723] (imputed)	N
1512	chr11	121536010	121536011	rs568599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11q24.1		rs568599-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1512	chr11	121542922	121542923	rs1783835	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	11q24.1	NR	rs1783835-G	0.5431	2E-13		0.015108303	[0.011-0.019] unit increase	Affymetrix [10613246] (imputed)	N
1512	chr11	121542922	121542923	rs1783835	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	11q24.1	SORL1	rs1783835-A	0.4569	2E-9		5.979	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1512	chr11	121542922	121542923	rs1783835	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	11q24.1	NR	rs1783835-G	0.536	5E-12		0.011926755	[0.0085-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1512	chr11	121544284	121544285	rs682011	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11q24.1	NR	rs682011-C	0.559	2E-8		0.008212447	[0.0053-0.0111] unit increase	NR [~ 10000000] (imputed)	N
1512	chr11	121544983	121544984	rs485425	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	11q24.1	SORL1	rs485425-C	0.45	6E-11		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1512	chr11	121544983	121544984	rs485425	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	11q24.1	SORL1	rs485425-C	0.4532	5E-12		0.015480648	[0.011-0.02] unit decrease	Affymetrix [11514936] (imputed)	N
1512	chr11	121549090	121549091	rs530916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q24.1	NR	rs530916-G	0.558	1E-12		0.00945064	[0.0068-0.0121] unit increase	NR [~ 9732723] (imputed)	N
1512	chr11	121571684	121571684	rs5795281	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.1	NR	rs5795281-CTT	NR	7E-10		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr11	121574857	121574858	rs540824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q24.1		rs540824-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1512	chr11	121579483	121579484	rs633277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q24.1		rs633277-C	NR	9E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1512	chr11	121581418	121581419	rs519662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	11q24.1		rs519662-C	NR	7E-9		0.0822	[0.054-0.11] unit decrease	Affymetrix, Illumina [25844273] (imputed)	N
1512	chr11	121584930	121584931	rs10790452	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	11q24.1	SORL1	rs10790452-T	0.7369	1E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1512	chr11	121584930	121584931	rs10790452	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11q24.1	SORL1	rs10790452-T	0.7369	5E-6		0.0035	[0.0019-0.0051] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1512	chr11	121587882	121587883	rs663617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q24.1		rs663617-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1512	chr11	121597445	121597446	rs4936644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q24.1		rs4936644-T	NR	1E-13		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1512	chr11	121597445	121597446	rs4936644	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11q24.1	SORL1	rs4936644-T	0.7876	3E-6	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1512	chr11	121624172	121624177	rs140239378	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	11q24.1	NR	rs140239378-A	0.7803	7E-9		5.8	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1512	chr11	121629006	121629007	rs949078	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	11q24.1	SORL1, MIR100HG	rs949078-C	0.27	5E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1512	chr11	121629635	121629636	rs7945853	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q24.1		rs7945853-G	0.219	5E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1512	chr11	121632465	121632466	rs7106615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q24.1	NR	rs7106615-A	NR	2E-10		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr11	121632465	121632466	rs7106615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q24.1	NR	rs7106615-A	NR	5E-11		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr11	121632809	121632810	rs7107004	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	11q24.1	SORL1	rs7107004-C	0.796	1E-8		0.0019	[0.0011-0.0027] unit increase	Affymetrix [NR] (imputed)	N
1512	chr11	121634333	121634334	rs1944689	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q24.1	NR	rs1944689-T	0.785911	1E-8	(Conditioned on chr11:122023187, chr11:121530888)	0.01768	[0.012-0.024] unit increase	NR [~ 10000000] (imputed)	N
1513	chr11	121635462	121635463	rs1944688	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q24.1	SORL1	rs1944688-A	0.779	4E-8		0.013280717	[0.0085-0.018] unit increase	Affymetrix [11514654] (imputed)	N
1513	chr11	121645004	121645005	rs2156664	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	11q24.1	SORL1	rs2156664-T	0.2673	8E-14		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1513	chr11	121661506	121661507	rs4935786	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	11q24.1	SORL1	rs4935786-T	0.267	5E-9		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1513	chr11	121670711	121670712	rs12280388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs12280388-C	0.0638718	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.1		rs67575951-C	0.06665	6E-11		0.029642502	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q24.1	NR	rs67575951-C	0.067316	3E-11		0.02453	[0.017-0.032] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs67575951-C	0.0618273	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q24.1	NR	rs67575951-C	0.067348	2E-12		0.025963	[0.019-0.033] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q24.1	NR	rs67575951-C	0.06714	2E-10		0.024089	[0.017-0.031] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.1	SORL1	rs67575951-A	0.935605	9E-13		0.0265812	[0.019-0.034] unit increase	NR [13737936] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs67575951-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1513	chr11	121671489	121671490	rs67575951	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs67575951-?	NR	4E-15		0.0330717	[0.025-0.041] unit increase	Affymetrix [20259828] (imputed)	N
1513	chr11	121691448	121691448	rs143880160	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	11q24.1		rs143880160-GTA	NR	7E-7		0.17861	[0.11-0.25] unit decrease	Illumina [NR] (imputed)	N
1513	chr11	121720285	121720286	rs74757509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.1		rs74757509-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1513	chr11	121744177	121744178	rs1219407	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder in prion disease	Up to 170 cases	NA	11q24.1	SORL1	rs1219407-?	0.073	4E-6		7.6	[2.83-20.39]	Illumina [518938]	N
1513	chr11	121744368	121744369	rs1219406	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	11q24.1	SORL1, MIR125B1, MIR100HG, BLID, RNU6-256P, AP001977.1	rs1219406-C	NR	4E-8		1.65	1.48-1.82	Illumina [7605010] (imputed)	N
1514	chr11	121780848	121780849	rs11218447	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q24.1	Intergenic	rs11218447-G	0.6591	1E-8		0.0137	[0.009-0.0184] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1514	chr11	121784613	121784614	rs12146618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q24.1	Intergenic	rs12146618-T	0.435	4E-11	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1514	chr11	121784613	121784614	rs12146618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q24.1	Intergenic	rs12146618-T	0.4403	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1514	chr11	121800970	121800971	rs1622638	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.1	MIR100HG	rs1622638-G	0.606818	1E-15		0.0150846	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1514	chr11	121800970	121800971	rs1622638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs1622638-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1514	chr11	121800970	121800971	rs1622638	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs1622638-?	NR	3E-11		0.0142396	[0.01-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
1514	chr11	121800970	121800971	rs1622638	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q24.1	MIR100HG	rs1622638-G	0.606608	6E-8	(women)	0.0242169	[0.015-0.033] unit decrease	NR [17166351] (imputed)	N
1514	chr11	121800970	121800971	rs1622638	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q24.1	MIR100HG	rs1622638-G	0.605212	1E-11		0.0224356	[0.016-0.029] unit decrease	NR [17166351] (imputed)	N
1514	chr11	121801128	121801129	rs1666658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q24.1	NR	rs1666658-C	NR	8E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr11	121801128	121801129	rs1666658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	11q24.1	NR	rs1666658-C	NR	5E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr11	121810801	121810802	rs143694932	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	11q24.1	NR	rs143694932-?	NR	3E-6		17.015	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1514	chr11	121811429	121811430	rs1219460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q24.1	Intergenic	rs1219460-A	0.7496	1E-9	(MTAG)	0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1514	chr11	121815490	121815491	rs1448133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q24.1	Intergenic	rs1448133-C	0.2499	4E-9		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1514	chr11	121879937	121879938	rs2852835	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	11q24.1	intergenic	rs2852835-C	0.267	6E-6				Illumina [331281]	N
1515	chr11	121900177	121900178	rs76561503	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	11q24.1	NR	rs76561503-C	0.179	3E-10		0.158	[0.11-0.21] unit increase	Illumina [NR]	N
1515	chr11	121913229	121913230	rs725670	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	11q24.1	BLID	rs725670-A	0.383	4E-8		0.0322	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1515	chr11	121922586	121922587	rs11218510	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q24.1	BLID	rs11218510-G	0.599589	8E-9		0.0080957	[0.0053-0.0108] unit increase	Affymetrix [12370749]	N
1515	chr11	121922586	121922587	rs11218510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q24.1	NR	rs11218510-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1515	chr11	121922586	121922587	rs11218510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q24.1		rs11218510-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1515	chr11	121922586	121922587	rs11218510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q24.1	NA	rs11218510-A	0.3949	7E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1515	chr11	121922586	121922587	rs11218510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q24.1	NA	rs11218510-A	0.3949	7E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1515	chr11	121923209	121923210	rs10892798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs10892798-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1515	chr11	121923209	121923210	rs10892798	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs10892798-?	NR	5E-14		0.0166764	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1515	chr11	121950848	121950849	rs76565323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.1		rs76565323-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1515	chr11	121954656	121954657	rs7121446	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors (age interaction)	525 European ancestry individuals	2,442 Finnish ancestry individuals	11q24.1	SORL1, BLID	rs7121446-G	NR	3E-6	(waist circumference)	0.15	[0.09-0.21] unit decrease	Illumina [2173391] (imputed)	N
1515	chr11	121983369	121983370	rs518839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q24.1	Intergenic	rs518839-A	0.3873	3E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr11	121983369	121983370	rs518839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q24.1	Intergenic	rs518839-A	0.3873	1E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1515	chr11	121983369	121983370	rs518839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q24.1	Intergenic	rs518839-A	0.3869	3E-15	(MTAG)	0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr11	121983369	121983370	rs518839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q24.1	Intergenic	rs518839-A	0.3925	3E-8	(MTAG)	0.013	[0.0083-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr11	121987092	121987093	rs17246395	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	11q24.1		rs17246395-?	NR	2E-9		1.4772	[1-1.96] unit increase	Affymetrix [NR] (imputed)	N
1515	chr11	121998252	121998253	rs10892806	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q24.1	ENSG00000255248	rs10892806-?	NR	1E-8		0.01153827	[0.0076-0.0155] unit increase	NR [7306098]	N
1515	chr11	121998253	121998254	rs10892807	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	11q24.1	RP11-166D19.1	rs10892807-T	0.43	1E-8		0.011677057	[0.0077-0.0157] unit increase	Affymetrix [up to 18485882] (imputed)	N
1515	chr11	121998253	121998254	rs10892807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q24.1		rs10892807-T	0.5671	1E-14		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1515	chr11	122014109	122014110	rs579682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q24.1		rs579682-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1515	chr11	122014109	122014110	rs579682	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q24.1	NR	rs579682-C	0.283535	4E-20		0.0316367	[0.025-0.038] unit decrease	NR [19129689] (imputed)	N
1515	chr11	122014109	122014110	rs579682	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q24.1	NA	rs579682-T	0.7141	2E-11		0.0133	[0.0094-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
1515	chr11	122014109	122014110	rs579682	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q24.1	NR	rs579682-T	0.7141	2E-11		0.0133	[0.0094-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
1515	chr11	122017597	122017598	rs1143770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q24.1	Intergenic	rs1143770-T	0.5807	9E-16	(MTAG)	0.0107	[0.0082-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1515	chr11	122023186	122023187	rs1834306	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q24.1	NR	rs1834306-G	0.579	5E-9		0.006518	[0.0043-0.0087] unit decrease	NR [9732723] (imputed)	N
1515	chr11	122023186	122023187	rs1834306	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q24.1	NR	rs1834306-G	0.579399	2E-8	(Conditioned on chr11:121530888)	0.014485212	[0.0094-0.0195] unit decrease	NR [~ 10000000] (imputed)	N
1516	chr11	122030189	122030190	rs577948	19779542	Nakanishi H	2009-09-25	PLoS Genet	A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1.	Myopia (pathological)	297 Japanese ancestry cases, 934 Japanese ancestry controls	533 Japanese ancestry cases, 977 Japanese ancestry controls	11q24.1	LOC399959, BLID	rs577948-G	0.52	2E-7		1.37	[1.21-1.54]	Illumina [411777]	N
1516	chr11	122093089	122093090	rs3867239	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q24.1	BLID, UBASH3B	rs3867239-A	0.3762	2E-11		1.0265462		Affymetrix [11880941] (imputed)	N
1516	chr11	122098542	122098543	rs7113056	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	11q24.1	RP11-166D19.1	rs7113056-C	NR	2E-13	(Lactobacillales order)	0.5	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1516	chr11	122099838	122099839	rs11218557	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	11q24.1	RP11, 820L6.1	rs11218557-T	0.4579	1E-8		5.6932507	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1516	chr11	122135106	122135107	rs577924	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	11q24.1		rs577924-T	0.5342	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1516	chr11	122154575	122154576	rs11218575	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	11q24.1	NR	rs11218575-?		2E-12		0.0153751	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1517	chr11	122176382	122176383	rs4127499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q24.1		rs4127499-A	0.3495	4E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr11	122189464	122189465	rs565229	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	11q24.1	intergenic	rs565229-?	0.10	4E-6	(pltcoll)			Affymetrix [70897]	N
1517	chr11	122192438	122192439	rs1109768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q24.1		rs1109768-T	0.4175	3E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr11	122198705	122198706	rs10790495	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	11q24.1	MIR100HG	rs10790495-G	NR	2E-8	(TAG(56:4;0))	0.2031	[0.13-0.27] unit decrease	Illumina [~ 9300000] (imputed)	N
1517	chr11	122210989	122210990	rs10892827	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	11q24.1	NR	rs10892827-G	0.07999999999999996	8E-6		1.25	[1.14-1.37]	NR [at least 8807005] (imputed)	N
1517	chr11	122269613	122269614	rs183974900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q24.1	Intergenic	rs183974900-G	0.999	1E-6	(AA)	0.398	unit increase	Illumina [NR] (imputed)	N
1518	chr11	122306332	122306333	rs55955613	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	11q24.1	Intergenic	rs55955613-T	0.8788	6E-6		0.7504	[0.43-1.07] unit increase	Illumina [9520174] (imputed)	N
1518	chr11	122347596	122347596	rs371231344	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs371231344-?	NR	5E-9		0.0177934	[0.012-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1518	chr11	122360882	122360883	rs117752187	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11q24.1		rs117752187-G	NR	6E-11	(GLM)	7.9991	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1518	chr11	122367925	122367926	rs7121378	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.1	MIR100HG	rs7121378-T	0.12167	9E-11		0.0181725	[0.013-0.024] unit decrease	NR [13737936] (imputed)	N
1518	chr11	122367925	122367926	rs7121378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs7121378-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1518	chr11	122391186	122391187	rs2084637	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	11q24.1	TRNAK27, GLULP3, UBASH3B	rs2084637-T	0.89	9E-7		0.32	[0.18-0.46] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
1518	chr11	122391441	122391442	rs1868752	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Eye length	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	11q24.1	UBASH3B	rs1868752-?	NR	8E-9	(Uyghur)	3.19	[NR] unit increase	Illumina [8100752] (imputed)	N
1519	chr11	122423838	122423839	rs594039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.1		rs594039-A	0.54913	4E-10		0.014579454	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1519	chr11	122430751	122430752	rs10892858	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	11q24.1	NR	rs10892858-?	NR	6E-6		0.1874	unit decrease	Affymetrix, Illumina [up to 1078289] (imputed)	N
1519	chr11	122472062	122472063	rs11218708	29857070	Gao J	2018-05-29	J Invest Dermatol	Association study and fine-mapping major histocompatibility complex analysis of pemphigus vulgaris in a Han Chinese population.	Pemphigus vulgaris	240 Han Chinese ancestry cases, 1,031 Han Chinese ancestry controls	252 Han Chinese ancestry cases, 1,852 Han Chinese ancestry controls	11q24.1	UBASH3B	rs11218708-A	0.21	3E-8		1.54	[NR]	Illumina [802980]	N
1519	chr11	122490658	122490659	rs145803288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q24.1	Intergenic	rs145803288-T	1.0	2E-6	(AA)	0.348	unit increase	Illumina [NR] (imputed)	N
1519	chr11	122495677	122495678	rs3890623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q24.1	NR	rs3890623-G	NR	3E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1519	chr11	122500489	122500490	rs140740457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q24.1	intergenic	rs140740457-C	0.1268	4E-16		0.04440177	[0.034-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122500489	122500490	rs140740457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q24.1	intergenic	rs140740457-C	0.1268	1E-9		0.03319028	[0.022-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122504250	122504251	rs10502249	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.1	UBASH3B	rs10502249-G	0.71203125	1E-11	(UBASH3B, 12558_3_3)	0.18686937	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1519	chr11	122504677	122504677	rs113782313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	11q24.1		rs113782313-AG	NR	2E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1519	chr11	122504699	122504700	rs11218720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q24.1		rs11218720-G	NR	9E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1519	chr11	122504699	122504700	rs11218720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs11218720-A	NR	2E-12		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122504699	122504700	rs11218720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs11218720-A	0.622	2E-11	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122504716	122504717	rs11218721	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q24.1	NR	rs11218721-A	0.3894	1E-12		0.001554	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
1519	chr11	122504716	122504717	rs11218721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q24.1	NR	rs11218721-A	NR	3E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1519	chr11	122504716	122504717	rs11218721	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q24.1	intergenic	rs11218721-A	0.3808	6E-10		0.0175	[0.012-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1519	chr11	122506128	122506129	rs12577260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q24.1		rs12577260-G	0.123703	5E-46		0.048158713	[0.042-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122506969	122506970	rs7927208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	11q24.1		rs7927208-C	0.385273	4E-11		0.015254054	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122506969	122506970	rs7927208	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q24.1	intergenic	rs7927208-T	0.6135	3E-15		0.022	[0.017-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1519	chr11	122509236	122509237	rs11218725	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	11q24.1		rs11218725-A	0.623	2E-20				Affymetrix [10369434] (imputed)	N
1519	chr11	122509236	122509237	rs11218725	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	11q24.1		rs11218725-A	0.623	1E-22				Affymetrix [10369434] (imputed)	N
1519	chr11	122509236	122509237	rs11218725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.1		rs11218725-G	0.377116	1E-39		0.030143686	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122509236	122509237	rs11218725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs11218725-G	0.344675	1E-61				Affymetrix, Illumina [23472807] (imputed)	N
1519	chr11	122509236	122509237	rs11218725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q24.1	NR	rs11218725-G	0.376523	1E-63		0.033008	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1519	chr11	122509490	122509491	rs7952141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q24.1		rs7952141-A	NR	5E-17		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1519	chr11	122509490	122509491	rs7952141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q24.1		rs7952141-A	NR	6E-17		0.0164	[0.012-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1519	chr11	122514280	122514281	rs58432776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q24.1		rs58432776-A	0.379656	4E-45		0.032249782	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1519	chr11	122514280	122514281	rs58432776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q24.1		rs58432776-A	0.379678	2E-46		0.03270334	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122514402	122514403	rs58473820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q24.1		rs58473820-T	NR	6E-34		0.0269	[0.023-0.031] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1519	chr11	122514402	122514403	rs58473820	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q24.1	UBASH3B	rs58473820-C	0.62193	7E-39		0.0256484	[0.022-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1519	chr11	122514402	122514403	rs58473820	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q24.1	UBASH3B	rs58473820-C	0.622012	1E-24		0.0207422	[0.017-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1519	chr11	122514402	122514403	rs58473820	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	11q24.1	intergenic	rs58473820-T	0.3793	7E-16		0.02969646	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122515684	122515684	rs143905841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q24.1		rs143905841-CT	NR	5E-17		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1519	chr11	122515684	122515684	rs143905841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q24.1		rs143905841-CT	NR	7E-16		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q24.1	MIR100HG, UBASH3B	rs6589939-?		7E-9		0.0293	[0.019-0.039] unit increase	Illumina [31500000] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q24.1	UBASH3B	rs6589939-A	0.621579	7E-10		0.0132825	[0.0091-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q24.1	MIR100HG	rs6589939-G	NR	2E-12		1.0828371	NR	Affymetrix, Illumina [8278136] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	11q24.1	intergenic	rs6589939-G	0.3792	1E-18		0.0323586	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	11q24.1	intergenic	rs6589939-G	0.3793	6E-18		0.03171134	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122518524	122518525	rs6589939	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q24.1	intergenic	rs6589939-G	0.3793	2E-28		0.04097384	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122519021	122519022	rs6589941	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q24.1	BLID, UBASH3B	rs6589941-G	0.39	1E-11		6.78	z-score increase	Affymetrix [4314223] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q24.1		rs11602323-G	NR	2E-9		0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q24.1		rs11602323-G	0.122847	8E-10		0.020879528	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs11602323-G	0.113921	2E-30				Affymetrix, Illumina [24649327] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q24.1	NR	rs11602323-G	0.123309	8E-32		0.033005	[0.027-0.039] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q24.1	NR	rs11602323-G	0.123096	9E-115		0.06519	[0.06-0.071] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1519	chr11	122519280	122519281	rs11602323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q24.1		rs11602323-?	NR	6E-27				NR [~ 8900000] (imputed)	N
1519	chr11	122519287	122519288	rs7939337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q24.1		rs7939337-T	0.264634	6E-13		0.018081207	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1519	chr11	122519287	122519288	rs7939337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs7939337-T	0.268743	2E-14				Affymetrix, Illumina [23114412] (imputed)	N
1519	chr11	122519287	122519288	rs7939337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q24.1	NR	rs7939337-T	0.264436	3E-17		0.018449	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1519	chr11	122519351	122519352	rs11600178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q24.1		rs11600178-A	NR	2E-62		0.0542	[0.048-0.06] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1519	chr11	122519978	122519979	rs7121365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q24.1	NR	rs7121365-A	0.123049	7E-19		0.029891282	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122519978	122519979	rs7121365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.1		rs7121365-A	0.123027	2E-81		0.064630635	[0.058-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122520060	122520061	rs144110170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	11q24.1	intergenic	rs144110170-A	0.1238	9E-16		0.0436439	[0.033-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122520060	122520061	rs144110170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11q24.1	intergenic	rs144110170-A	0.1238	5E-39		0.07112807	[0.06-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr11	122520290	122520291	rs1945391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	11q24.1		rs1945391-A	0.612242	8E-15		0.0326323	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1519	chr11	122520290	122520291	rs1945391	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q24.1	intergenic	rs1945391-A	0.5525	2E-16		0.0228	[0.017-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1519	chr11	122520527	122520528	rs1945392	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs1945392-C	0.117226	6E-120				Affymetrix, Illumina [23467995] (imputed)	N
1519	chr11	122520557	122520558	rs1945393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q24.1		rs1945393-G	NR	7E-17		0.0262	[0.02-0.032] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1519	chr11	122520557	122520558	rs1945393	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	11q24.1		rs1945393-A	0.876	1E-43				Affymetrix [10369434] (imputed)	N
1519	chr11	122520557	122520558	rs1945393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q24.1		rs1945393-G	0.123926	2E-11		0.022966927	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1519	chr11	122520557	122520558	rs1945393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs1945393-A	0.875633	5E-11				Affymetrix, Illumina [17210439] (imputed)	N
1519	chr11	122520557	122520558	rs1945393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q24.1	NR	rs1945393-A	0.875975	1E-13		0.021582	[0.016-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1519	chr11	122520916	122520932	rs374716904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.1		rs374716904-T	0.210543	3E-9		0.016757252	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122521104	122521105	rs12574322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	11q24.1		rs12574322-T	NR	1E-9		0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1519	chr11	122521122	122521123	rs12574332	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	11q24.1	UBASH3B	rs12574332-C	0.8773	6E-15		0.2072	[0.16-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	11q24.1		rs7941030-T	0.616324	3E-9		0.0235515	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q24.1	UBASH3B	rs7941030-?	NR	3E-13		0.0192	[0.014-0.024] unit increase	Affymetrix [5701386] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7941030-T	NR	2E-9		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7941030-T	0.624	4E-9	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	11q24.1	UBASH3B	rs7941030-?	NR	8E-6			[0.8691-0.9509]	NR [2492237]	N
1519	chr11	122522374	122522375	rs7941030	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.1	UBASH3B	rs7941030-C	0.39	1E-14		0.027	[NR] unit increase	NR [NR] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.1	UBASH3B	rs7941030-C	0.39	2E-14		0.028	[NR] unit increase	NR [NR] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	11q24.1	UBASH3B	rs7941030-G	0.37	3E-8		0.31	[0.15-0.47] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1519	chr11	122522374	122522375	rs7941030	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q24.1	UBASH3B	rs7941030-C	0.38	2E-10		0.97	[0.6-1.34] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1519	chr11	122523666	122523667	rs11218736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBASH3B	5,367 Icelandic ancestry individuals	NA	11q24.1		rs11218736-T	0.2726	4E-13		0.157488	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
1519	chr11	122524667	122524668	rs61911502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q24.1		rs61911502-G	NR	8E-13		0.0229	[0.017-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1519	chr11	122526600	122526601	rs7128198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7128198-C	NR	3E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122526600	122526601	rs7128198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7128198-C	0.637	3E-8	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122526600	122526601	rs7128198	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	11q24.1	UBASH3B	rs7128198-T	0.38	4E-9		0.036	[0.024-0.048] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1519	chr11	122527211	122527212	rs7129204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	11q24.1		rs7129204-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1519	chr11	122528351	122528352	rs12421055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q24.1		rs12421055-C	NR	3E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1519	chr11	122530590	122530591	rs7115089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7115089-C	NR	3E-9		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122530590	122530591	rs7115089	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs7115089-C	0.628	1E-8	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122534503	122534504	rs7117842	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q24.1	UBASH3B	rs7117842-T	0.611	5E-15	(Trans-ethnic initial)	0.0294	[0.022-0.036] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1519	chr11	122534809	122534810	rs7101940	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q24.1	UBASH3B	rs7101940-A	0.622524	8E-11		0.00158741	[0.0011-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1519	chr11	122534809	122534810	rs7101940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	11q24.1	UBASH3B	rs7101940-G	0.37773	1E-9		0.014070857	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr11	122535141	122535141	rs397966489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q24.1		rs397966489-GAAGAATGAGAT	NR	6E-38		0.03	[0.025-0.035] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1519	chr11	122535332	122535333	rs10892873	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q24.1	NA	rs10892873-C	0.3614	2E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1519	chr11	122535332	122535333	rs10892873	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q24.1	NA	rs10892873-C	0.3614	2E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1519	chr11	122535407	122535408	rs10790519	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs10790519-T	NR	1E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122535407	122535408	rs10790519	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.1	NR	rs10790519-T	0.625	4E-8	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1519	chr11	122545145	122545146	rs35483388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q24.1		rs35483388-T	NR	2E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1519	chr11	122545145	122545146	rs35483388	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q24.1	NR	rs35483388-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1519	chr11	122545145	122545146	rs35483388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q24.1		rs35483388-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1520	chr11	122553587	122553588	rs10892881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.1	NR	rs10892881-A	NR	2E-11		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr11	122553587	122553588	rs10892881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q24.1	NR	rs10892881-A	NR	7E-11		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr11	122593905	122593906	rs7944444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	11q24.1		rs7944444-A	NR	3E-8		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1520	chr11	122598601	122598602	rs1945397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q24.1	NR	rs1945397-G	0.435949	1E-10		0.012179	[0.0085-0.0159] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1520	chr11	122598601	122598602	rs1945397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q24.1		rs1945397-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1520	chr11	122598783	122598784	rs1945398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	11q24.1		rs1945398-G	NR	3E-13		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1520	chr11	122599662	122599663	rs74599168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q24.1	NR	rs74599168-T	NR	1E-11		0.032	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr11	122601033	122601034	rs7936300	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	11q24.1	UBASH3B	rs7936300-A	0.634	3E-8		0.0044	[0.0028-0.006] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1520	chr11	122609878	122609879	rs4427576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q24.1		rs4427576-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1520	chr11	122610325	122610326	rs2156804	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q24.1	NR	rs2156804-G	0.5126269999999999	1E-9		0.00480306	[0.0032-0.0065] unit increase	Affymetrix [16582909] (imputed)	N
1520	chr11	122610325	122610326	rs2156804	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q24.1	NR	rs2156804-G	0.5126269999999999	9E-9		0.004873	[0.003-0.0067] unit increase	Affymetrix [16582965] (imputed)	N
1520	chr11	122610567	122610568	rs2156805	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	11q24.1	NR	rs2156805-G	0.50812	4E-8		0.00570211	[0.0034-0.008] unit increase	Affymetrix [16582621] (imputed)	N
1520	chr11	122610567	122610568	rs2156805	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	11q24.1	NR	rs2156805-G	0.50812	1E-6		0.00537882	[0.003-0.0078] unit increase	Affymetrix [16582614] (imputed)	N
1520	chr11	122611429	122611430	rs1106243	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q24.1	UBASH3B	rs1106243-A	0.523	1E-11		0.1811	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1520	chr11	122622989	122622990	rs4936738	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q24.1	UBASH3B	rs4936738-C	0.0701646619748923	5E-6	(O_Clostridiales_RNT)	0.209087	[0.12-0.3] unit increase	Illumina [7711310] (imputed)	N
1520	chr11	122670389	122670390	rs873590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q24.1		rs873590-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1520	chr11	122678512	122678513	rs57213254	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	11q24.1	UBASH3B	rs57213254-T	0.011	6E-9	(log(CRP))	3.16	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1520	chr11	122681834	122681835	rs73028070	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	11q24.1	NR	rs73028070-A	0.0786	2E-8		0.4329	[0.28-0.58] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
1521	chr11	122709177	122709178	rs3134425	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	11q24.1	CRTAM	rs3134425-C	0.6190244389999999	1E-6		1.1615169	[1.09-1.23]	Illumina [10439017] (imputed)	N
1521	chr11	122714781	122714782	rs2370794	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAM	5,368 Icelandic ancestry individuals	NA	11q24.1		rs2370794-G	0.3322	3E-33		0.236776	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1521	chr11	122714781	122714782	rs2370794	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.1	CRTAM	rs2370794-A	0.6675	6E-20	(CRTAM, 7968_15_3)	0.23558624	[0.19-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1521	chr11	122729106	122729107	rs7942122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q24.1		rs7942122-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1521	chr11	122752713	122752714	rs4936757	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAM	5,368 Icelandic ancestry individuals	NA	11q24.1		rs4936757-T	0.431	2E-11		0.128099	[0.091-0.165] unit decrease	Illumina [7506463] (imputed)	N
1521	chr11	122762431	122762432	rs7950748	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q24.1	NR	rs7950748-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1521	chr11	122762431	122762432	rs7950748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q24.1		rs7950748-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1521	chr11	122771663	122771664	rs11218882	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	11q24.1	NR	rs11218882-T	0.36	3E-9		1.08	NR	NR [8853336] (imputed)	N
1521	chr11	122773714	122773715	rs10892924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q24.1	NR	rs10892924-T	0.5684739999999999	3E-17		0.0107634	[0.0082-0.0133] unit increase	Affymetrix [16578495] (imputed)	N
1521	chr11	122773714	122773715	rs10892924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q24.1	NR	rs10892924-T	0.567815	8E-26		0.0316012	[0.026-0.038] unit increase	Affymetrix [16577313] (imputed)	N
1521	chr11	122773714	122773715	rs10892924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q24.1	NR	rs10892924-T	0.568234	3E-21		0.0187203	[0.015-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1521	chr11	122773714	122773715	rs10892924	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11q24.1	NR	rs10892924-T	0.5678650000000001	3E-37		0.0393968	[0.033-0.045] unit increase	Affymetrix [16577424] (imputed)	N
1521	chr11	122779019	122779020	rs35798966	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		JHY	rs35798966-?	NR	8E-9	(female)	0.973412	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1521	chr11	122784563	122784564	rs147130482	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11q24.1	NR	rs147130482-A	0.0171	8E-8		4.3799	[2.78-5.98] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1521	chr11	122784563	122784564	rs147130482	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	11q24.1	NR	rs147130482-A	0.0171	8E-8		4.3799	[2.78-5.98] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1521	chr11	122790096	122790097	rs58906513	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q24.1	NR	rs58906513-?	NR	1E-8				Illumina [7760689] (imputed)	N
1521	chr11	122805062	122805063	rs144048300	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	11q24.1	C11orf63	rs144048300-T	0.16	1E-8	(japanese)	0.07	[0.05-0.09] year increase	Illumina [at least 532488] (imputed)	N
1521	chr11	122806027	122806028	rs4505076	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	11q24.1	JHY	rs4505076-?		2E-6				Illumina [7405822] (imputed)	N
1521	chr11	122806038	122806039	rs4505077	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs4505077-?	NR	2E-6		0.0105407	[0.0064-0.0146] unit increase	Affymetrix [20259828] (imputed)	N
1521	chr11	122806038	122806039	rs4505077	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	11q24.1	C11orf63	rs4505077-C	0.494221	3E-9		0.0199262	[0.013-0.027] unit increase	NR [17166351] (imputed)	N
1521	chr11	122809041	122809042	rs7109006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs7109006-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1521	chr11	122809054	122809055	rs7123283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	11q24.1	C11orf63	rs7123283-T	NR	1E-9		0.0189218	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1521	chr11	122809054	122809055	rs7123283	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q24.1	C11orf63	rs7123283-C	0.525219	4E-9		0.00832173	[0.0056-0.0111] unit increase	Affymetrix [12370749]	N
1521	chr11	122809689	122809690	rs11218895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q24.1	C11orf63	rs11218895-G	NR	2E-8		0.0180076	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1521	chr11	122811821	122811822	rs74357745	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q24.1	C11orf63	rs74357745-A	0.8803	4E-10		1.0316918		Affymetrix [11880941] (imputed)	N
1521	chr11	122813223	122813224	rs7110373	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	11q24.1	C11orf63	rs7110373-?	NR	2E-13		0.04	[0.029-0.050] unit increase	Illumina [12039491]	N
1522	chr11	122814473	122814474	rs73606718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q24.1		rs73606718-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1522	chr11	122819118	122819119	rs7113019	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	11q24.1	C11orf63	rs7113019-?	NR	7E-12		0.03	[0.021-0.038] unit increase	Illumina [12039492]	N
1522	chr11	122819791	122819791	rs112131604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q24.1	C11orf63	rs112131604-C	NR	2E-13		0.0228901	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1522	chr11	122820280	122820281	rs6589961	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	11q24.1		rs6589961-T	NR	1E-11		0.00540525	[0.0038-0.007] years increase	NR [7400000] (imputed)	N
1522	chr11	122820280	122820281	rs6589961	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	11q24.1		rs6589961-T	NR	6E-11		0.00720234	[0.005-0.0094] years increase	NR [7400000] (imputed)	N
1522	chr11	122820280	122820281	rs6589961	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	11q24.1		rs6589961-T	NR	4E-7		0.00357977	[0.0022-0.005] years decrease	NR [7400000] (imputed)	N
1522	chr11	122820280	122820281	rs6589961	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	11q24.1		rs6589961-T	NR	6E-7		0.00435518	[0.0026-0.0061] years decrease	NR [7400000] (imputed)	N
1522	chr11	122820280	122820281	rs6589961	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	11q24.1		rs6589961-T	NR	2E-30		0.037559595	[0.031-0.044] years increase	NR [7400000] (imputed)	N
1522	chr11	122828341	122828342	rs3751046	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	11q24.1	C11orf63	rs3751046-G	NR	2E-8		1.072		Affymetrix [14661600] (imputed)	N
1522	chr11	122830250	122830251	rs1057703	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	11q24.1	NR	rs1057703-G	NR	9E-8		0.984	unit increase	Affymetrix [14661600] (imputed)	N
1522	chr11	122832073	122832074	rs7115813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	11q24.1		rs7115813-?	NR	3E-50				NR [~ 8900000] (imputed)	N
1522	chr11	122837036	122837037	rs11605693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q24.1		rs11605693-C	NR	1E-15		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1522	chr11	122845074	122845075	rs1461503	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	11q24.1	BSX	rs1461503-C	0.57	3E-26		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1522	chr11	122845379	122845380	rs7107560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.1		rs7107560-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1522	chr11	122851562	122851563	rs1870761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q24.1	BSX	rs1870761-A	NR	6E-10		0.01941	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1522	chr11	122870682	122870683	rs6589964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q24.1	RP11-335F8.2	rs6589964-A	NR	2E-8		0.0172501	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1522	chr11	122870682	122870683	rs6589964	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	11q24.1	intergenic	rs6589964-A		4E-6				Illumina [1690491] (imputed)	N
1522	chr11	122870682	122870683	rs6589964	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	11q24.1	BSX	rs6589964-A	0.48	2E-12		2.7	[1.92-3.48] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1522	chr11	122873075	122873076	rs2126200	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q24.1	NR	rs2126200-C	0.541753456007146	7E-6	(IGP21)	0.1392	[0.078-0.2] unit decrease	Illumina [~ 2500000] (imputed)	N
1522	chr11	122880280	122880281	rs12420422	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	11q24.1	NR	rs12420422-?	NR	2E-7				Affymetrix [NR]	N
1522	chr11	122880280	122880281	rs12420422	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	11q24.1	NR	rs12420422-?	NR	5E-10				Affymetrix [NR]	N
1522	chr11	122895391	122895392	rs4542425	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q24.1	RP11-335F8.2	rs4542425-T	0.0383	4E-6		0.0801	[0.046-0.114] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1522	chr11	122900936	122900937	rs6589965	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.1	NR	rs6589965-?	NR	2E-38				Affymetrix [NR]	N
1522	chr11	122918158	122918159	rs4936767	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs4936767-?		6E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122918158	122918159	rs4936767	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs4936767-?		2E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122926484	122926485	rs1461494	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs1461494-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122928621	122928622	rs4802	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs4802-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122928874	122928875	rs4936770	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs4936770-?		9E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122928874	122928875	rs4936770	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs4936770-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1522	chr11	122932775	122932776	rs2276074	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q24.1	HSPA8	rs2276074-G	0.894249	2E-11	(dihydroorotate)	0.248	[0.18-0.32] unit decrease	Illumina [13039987] (imputed)	N
1522	chr11	122932775	122932776	rs2276074	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	11q24.1	HSPA8	rs2276074-G	0.894249	2E-11	(dihydroorotate)	0.248	[0.18-0.32] unit decrease	Illumina [13039987] (imputed)	N
1522	chr11	122932775	122932776	rs2276074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	11q24.1	HSPA8	rs2276074-C	0.042149	5E-31		0.063814014	[0.053-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1522	chr11	122932775	122932776	rs2276074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	11q24.1	NR	rs2276074-G	0.66132	4E-10		0.024135	[0.017-0.032] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
1522	chr11	122933180	122933181	rs2236659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	11q24.1		rs2236659-G	0.174733	3E-8		0.0243181	[0.016-0.033] unit decrease	Illumina [13478928] (imputed)	N
1522	chr11	122933180	122933181	rs2236659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.1		rs2236659-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1522	chr11	122935516	122935517	rs12225163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	11q24.1		rs12225163-G	0.166875	1E-14		0.0376232	[0.028-0.047] unit decrease	Illumina [13476299] (imputed)	N
1522	chr11	122936482	122936483	rs11218946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	11q24.1		rs11218946-G	0.323546	7E-32		0.0452915	[0.038-0.053] unit decrease	Illumina [13477028] (imputed)	N
1522	chr11	122936810	122936811	rs77876049	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative acute renal failure after cardiac surgery	52 cases, 1,020 controls	NA	11q24.1	HSPA8	rs77876049-?	NR	9E-6	(adjusted for atrial fibrillation, delirium, myocardial infarction and stroke)	4.0	[2.17-7.14]	Illumina [9007469] (imputed)	N
1522	chr11	122937455	122937456	rs113954756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	11q24.1		rs113954756-A	0.327722	7E-9		0.0209635	[0.014-0.028] unit decrease	Illumina [13479091] (imputed)	N
1522	chr11	122937455	122937456	rs113954756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q24.1		rs113954756-A	NR	1E-8		0.0219	[0.014-0.029] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1522	chr11	122937455	122937456	rs113954756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs113954756-A	0.106364	5E-43				Affymetrix, Illumina [21126107] (imputed)	N
1522	chr11	122937455	122937456	rs113954756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q24.1		rs113954756-?	NR	4E-32				NR [~ 8900000] (imputed)	N
1522	chr11	122937859	122937860	rs190733142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	11q24.1	HSPA8	rs190733142-C	0.041992	1E-16		0.044406	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr11	122937859	122937860	rs190733142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q24.1	HSPA8	rs190733142-C	0.041996	5E-21		0.051790565	[0.041-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr11	122937859	122937860	rs190733142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	11q24.1	NR	rs190733142-C	0.042267	7E-20		0.045358	[0.036-0.055] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1522	chr11	122937859	122937860	rs190733142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q24.1	NR	rs190733142-C	0.042259	3E-21		0.045305	[0.036-0.055] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1522	chr11	122939339	122939340	rs7933208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	11q24.1		rs7933208-C	NR	4E-38		0.0417	[0.035-0.048] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1522	chr11	122939339	122939340	rs7933208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs7933208-T	0.947549	3E-35				Affymetrix, Illumina [22063850] (imputed)	N
1522	chr11	122939339	122939340	rs7933208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q24.1	NR	rs7933208-T	0.956983	6E-35		0.057657	[0.048-0.067] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1522	chr11	122939339	122939340	rs7933208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	11q24.1	NR	rs7933208-T	0.669644	5E-27		0.045798	[0.037-0.054] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1522	chr11	122939339	122939340	rs7933208	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	11q24.1	HSPA8, CLMP	rs7933208-?	NR	5E-23		0.04473	[0.036-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1522	chr11	122942907	122942908	rs11218950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q24.1		rs11218950-A	NR	2E-24		0.0382	[0.031-0.045] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1522	chr11	122944738	122944739	rs4936771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q24.1	CLMP	rs4936771-T	0.041474	4E-11		0.0328541	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1523	chr11	122946400	122946401	rs76381550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs76381550-C	0.0729194	2E-27				Affymetrix, Illumina [20825802] (imputed)	N
1523	chr11	122949544	122949545	rs7115329	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	11q24.1	CLMP	rs7115329-G	NR	2E-9		0.060981	[0.041-0.081] unit increase	Affymetrix [16832071] (imputed)	N
1523	chr11	122949544	122949545	rs7115329	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	11q24.1	CLMP	rs7115329-G	0.041	4E-10		0.05597973	[0.038-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1523	chr11	122950512	122950513	rs7941144	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs7941144-?		8E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122953424	122953424	rs149349478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q24.1		rs149349478-TTTTCCTGCC	NR	7E-10		0.0241	[0.016-0.032] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1523	chr11	122961657	122961658	rs11218976	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs11218976-?		5E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122964099	122964100	rs10892961	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs10892961-?		6E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122965486	122965487	rs7109445	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs7109445-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122965486	122965487	rs7109445	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs7109445-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122966625	122966626	rs7121616	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q24.1	NR	rs7121616-G	0.2854	7E-6	(EA)	0.0314	[0.018-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1523	chr11	122966625	122966626	rs7121616	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	11q24.1	NR	rs7121616-?		5E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1523	chr11	122981075	122981076	rs10458940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	11q24.1	NR	rs10458940-C	0.835977	2E-11		0.037872	[0.027-0.049] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1523	chr11	123009750	123009751	rs4345978	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	11q24.1	CLMP	rs4345978-?	0.247	1E-13		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1523	chr11	123045729	123045730	rs35483681	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.1	CLMP	rs35483681-T	0.554	5E-24	(CXADR-like membrane protein, CLMP.10440.26.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
1523	chr11	123064647	123064648	rs7941947	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLMP	5,363 Icelandic ancestry individuals	NA	11q24.1		rs7941947-T	0.3411	4E-35		0.237731	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1523	chr11	123064647	123064648	rs7941947	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.1	CLMP	rs7941947-C	0.65796875	2E-24	(CLMP, 10440_26_3)	0.26059684	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1523	chr11	123067654	123067655	rs2155572	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.1	CLMP	rs2155572-G	0.419549	3E-10		0.0118227	[0.0082-0.0155] unit increase	NR [13737936] (imputed)	N
1523	chr11	123067654	123067655	rs2155572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs2155572-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1523	chr11	123075418	123075419	rs11219068	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	11q24.1	Intergenic	rs11219068-A	0.15	2E-6		0.28	[0.17-0.40] unit increase	NR [~ 38000000] (imputed)	N
1524	chr11	123095427	123095428	rs17127163	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	11q24.1	CTD-2216M2.1	rs17127163-A	0.88	3E-7		0.7	[0.45-0.95] unit increase	Illumina [5833901] (imputed)	N
1524	chr11	123097385	123097386	rs493642	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (maternal genetic effects)	588 European ancestry complete and incomplete trios	NA	11q24.1	LOC105369539, LOC105369541	rs493642-?	NR	9E-6				Illumina [NR]	N
1524	chr11	123114581	123114582	rs139253612	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	11q24.1	CLMP, MIR4493	rs139253612-G	0.985	7E-7		0.450999	[0.27-0.63] unit increase	Illumina [7433384] (imputed)	N
1524	chr11	123134245	123134246	rs116756205	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.1	NR	rs116756205-G	0.01045	1E-8	(ARG1)	4.823	NR unit increase	Illumina [1671387] (imputed)	N
1524	chr11	123138959	123138960	rs7927484	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	11q24.1	Intergenic	rs7927484-?		9E-6		1.287	[NR]	Affymetrix [492217] (imputed)	N
1524	chr11	123138959	123138960	rs7927484	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	11q24.1	Intergenic	rs7927484-?	NR	3E-6		1.468	[NR]	Affymetrix [492217] (imputed)	N
1524	chr11	123148922	123148923	rs79862545	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11q24.1		rs79862545-C	NR	3E-7	(GLM)	6.1924	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1524	chr11	123189002	123189003	rs55847827	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria in chronic kidney disease	up to 744 European ancestry child cases, up to 397 Turkish ancestry child cases	NA	11q24.1	MIR4493, CLMP	rs55847827-G	0.18	7E-6		1.8	[1.39-2.32]	Illumina [~ 8300000] (imputed)	N
1525	chr11	123240172	123240173	rs11219122	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	11q24.1	MIR4493	rs11219122-C	0.35	2E-6		1.25	[1.14-1.37]	Affymetrix, Illumina [NR] (imputed)	N
1525	chr11	123264641	123264642	rs1943466	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		11q24.1	intergenic	rs1943466-?	NR	6E-7		1.69	[NR]	Illumina [up to 810372] (imputed)	N
1525	chr11	123264641	123264642	rs1943466	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer (hypertension) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		11q24.1	intergenic	rs1943466-?	NR	1E-6		1.82	[NR]	Illumina [up to 810372] (imputed)	N
1525	chr11	123312062	123312063	rs2714053	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.6147..6.hydroxymethyl.dihydropterin.diphosphate.biosynthesis.I)	7,738 European ancestry individuals	NA	11q24.1		rs2714053-A	0.401671939235552	5E-8		0.09596229	[0.061-0.13] unit decrease	Illumina [5584686] (imputed)	N
1525	chr11	123320929	123320930	rs146875062	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GRAMD1B	rs146875062-?	NR	4E-8	(female)	3.67669	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1525	chr11	123325110	123325111	rs75848431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q24.1	NR	rs75848431-T	0.15170799999999995	4E-15		0.0316829	[0.024-0.039] unit increase	Affymetrix [16580851] (imputed)	N
1525	chr11	123330466	123330467	rs56404409	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	11q24.1	GRAMD1B	rs56404409-?		6E-6		1.5007368	[1.26-1.79]	Illumina [2612357]	N
1525	chr11	123334297	123334298	rs12788072	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q24.1	NR	rs12788072-G	0.17760900000000002	3E-8		0.00959273	[0.0063-0.0129] unit increase	Affymetrix [16578495] (imputed)	N
1526	chr11	123344434	123344435	rs36020612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.1		rs36020612-T	0.194547	1E-9		0.01714665	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr11	123344434	123344435	rs36020612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q24.1		rs36020612-T	0.19452	1E-10		0.01831026	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1526	chr11	123344434	123344435	rs36020612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.1	NR	rs36020612-T	0.189489	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
1526	chr11	123344434	123344435	rs36020612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q24.1	NR	rs36020612-T	0.1943	2E-17		0.020654	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1526	chr11	123344958	123344959	rs36051450	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	11q24.1		rs36051450-C	NR	3E-14		1.525553	NR	Affymetrix [7846216] (imputed)	N
1526	chr11	123355390	123355391	rs35923643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q24.1	NR	rs35923643-A	0.803893	3E-10		0.015205	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1526	chr11	123355390	123355391	rs35923643	29547969	Chen X	2018-03-14	Hum Mol Genet	A genome-wide association study of IgM antibody against phosphorylcholine: shared genetics and phenotypic relation to chronic lymphocytic leukemia.	Immunoglobulin M against phosphorylcholine (IgM anti-PC) levels	3,002 European ancestry individuals	646 European ancestry individuals	11q24.1	GRAMD1B	rs35923643-G	0.230	4E-11		0.189	[0.13-0.25] unit increase	Illumina [NR] (imputed)	N
1526	chr11	123355390	123355391	rs35923643	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	11q24.1	SCN3B, GRAMD1B	rs35923643-G	NR	4E-58		1.63	[1.53-1.72]	Affymetrix, Illumina [> 10000000] (imputed)	N
1526	chr11	123355390	123355391	rs35923643	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	11q24.1	GRAMD1B	rs35923643-G	0.196	2E-40		1.66	[1.54-1.79]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1526	chr11	123361396	123361397	rs735665	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	11q24.1		rs735665-?	NR	3E-9		1.42182	[1.31-1.54]	NR [663083]	N
1526	chr11	123361396	123361397	rs735665	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	11q24.1	GRAMD1B	rs735665-A	0.1698	1E-23		0.15	NR SD units increase	Illumina [21568490] (imputed)	N
1526	chr11	123361396	123361397	rs735665	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	11q24.1	SCN3B, GRAMD1B	rs735665-A	0.19	4E-24		1.64	[NR]	Illumina [450000] (imputed)	N
1526	chr11	123361396	123361397	rs735665	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	11q24.1	SCN3B	rs735665-A	0.19	4E-39		1.62	[NR]	Illumina [549934]	N
1526	chr11	123361396	123361397	rs735665	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	11q24.1	NR	rs735665-A	0.20	3E-12		1.52	[1.35-1.72]	Affymetrix, Illumina [~ 1500000] (imputed)	N
1526	chr11	123361396	123361397	rs735665	20639881	Conde L	2010-07-18	Nat Genet	Genome-wide association study of follicular lymphoma identifies a risk locus at 6p21.32.	Follicular lymphoma	681 European ancestry cases, 750 European ancestry controls	up to 3,164 European ancestry cases, 6,208 European ancestry controls	11q24.1	intergenic	rs735665-T	0.21	4E-9	(CLL/SLL)	1.81	[1.50-2.20]	Illumina [312768]	N
1526	chr11	123361396	123361397	rs735665	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	11q24.1	GRAMD1B	rs735665-A	0.21	4E-12		1.45	[1.31-1.61]	Illumina [345665]	N
1526	chr11	123368332	123368333	rs2953196	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	11q24.1	NR	rs2953196-G	0.756	5E-16		1.3	[1.22-1.38]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1526	chr11	123390224	123390225	rs12799226	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	11q24.1	NR	rs12799226-C		7E-6		0.1257	[0.071-0.18] SD units increase	NR [10700000] (imputed)	N
1526	chr11	123392845	123392846	rs61123830	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	11q24.1	GRAMD1B	rs61123830-A		5E-8				NR [NR] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q24.1	NR	rs77502336-?	NR	6E-10		1.06194	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q24.1	GRAMD1B	rs77502336-C	NR	1E-7	(EA)	1.0642	[1.04-1.09]	Illumina [6627481] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q24.1	GRAMD1B	rs77502336-C	NR	1E-10		1.068	[1.05-1.09]	Illumina [6627481] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11q24.1	GRAMD1B	rs77502336-?	NR	5E-8				Illumina [8000000] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q24.1	GRAMD1B	rs77502336-C	NR	1E-9		1.063	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q24.1	intergenic	rs77502336-C		2E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1526	chr11	123394635	123394636	rs77502336	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q24.1	NR	rs77502336-C	NR	4E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
1526	chr11	123394635	123394636	rs77502336	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q24.1	GRAMD1B	rs77502336-C	0.322	8E-9		1.066	[1.043-1.090]	Affymetrix, Illumina [9005918] (imputed)	N
1526	chr11	123395245	123395246	rs4525246	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	11q24.1	GRAMD1B	rs4525246-C	NR	3E-14				Illumina [10806625] (imputed)	N
1526	chr11	123395469	123395470	rs4936822	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	11q24.1	GRAMD1B	rs4936822-A	0.155	8E-6	(men)			Illumina [622468]	N
1526	chr11	123395863	123395864	rs7927176	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q24.1	NR	rs7927176-?	NR	2E-8				Illumina [up to 5582932] (imputed)	N
1526	chr11	123416935	123416936	rs7126747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.1		rs7126747-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1526	chr11	123416935	123416936	rs7126747	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.1		rs7126747-?	NR	1E-10		0.0212038	[0.015-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1526	chr11	123421401	123421402	rs1029278	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	11q24.1	NR	rs1029278-?	NR	8E-6		0.0969634	[0.054-0.139] unit increase	NR [13958389] (imputed)	N
1526	chr11	123421401	123421402	rs1029278	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q24.1	GRAMD1B	rs1029278-?		5E-21				Affymetrix, Illumina [NR] (imputed)	N
1526	chr11	123437668	123437669	rs850294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	11q24.1	NR	rs850294-T	NR	1E-12		0.0282	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1526	chr11	123437668	123437669	rs850294	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	11q24.1	NR	rs850294-T	0.11360899999999996	5E-18		0.0337033	[0.026-0.042] unit increase	Affymetrix [16585745] (imputed)	N
1527	chr11	123477351	123477352	rs2279519	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	11q24.1	GRAMD1B	rs2279519-?		8E-6	(endpoint 5, dominant)	1.75	[NR]	Illumina [> 750000]	N
1527	chr11	123498734	123498735	rs1148114	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q24.1	NR	rs1148114-T	0.0841	9E-6		0.107	[0.06-0.154] unit decrease	Illumina [up to 1980188] (imputed)	N
1527	chr11	123498734	123498735	rs1148114	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	11q24.1	NR	rs1148114-T	0.0815	4E-6		0.1298	[0.075-0.185] unit decrease	Illumina [up to 1980188] (imputed)	N
1527	chr11	123511861	123511861	rs72552142	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11q24.1	NR	rs72552142-?	NR	2E-6		0.970563	[0.57-1.37] unit increase	NR [13958389] (imputed)	N
1527	chr11	123524095	123524096	rs3851101	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	11q24.1	NR	rs3851101-G	0.136	4E-7		1.4237511	[NR]	NR [9372253] (imputed)	N
1527	chr11	123550707	123550707	rs201921722	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	11q24.1	SCN3B, ZNF202	rs201921722-?		7E-7		1.2642225	[1.15-1.39]	Illumina [~ 12000000] (imputed)	N
1527	chr11	123595926	123595927	rs2126709	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	11q24.1	ZNF202	rs2126709-?	NR	4E-7	(SAS)			Affymetrix [492000]	N
1528	chr11	123648332	123648333	rs17744026	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific)	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	11q24.1	OR6X1	rs17744026-T	0.905	3E-6		4.0	[2.08-7.69]	Illumina [442089]	N
1528	chr11	123705425	123705426	rs114789419	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	11q24.1	OR6M1, TMEM225	rs114789419-?	NR	3E-6		2.5372	unit decrease	Affymetrix [NR] (imputed)	N
1529	chr11	123751827	123751828	rs12280105	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		11q24.1	PMP22CD	rs12280105-A	NR	3E-6		0.7135	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1529	chr11	123780391	123780392	rs75510224	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	11q24.1	OR4D5, OR6T1, OR8D4, TMEM225	rs75510224-?		3E-6		2.5675	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1529	chr11	123804418	123804419	rs10893109	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	11q24.1	NR	rs10893109-C	0.4956	2E-6		0.1449	[0.085-0.205] unit increase	Illumina [10677593] (imputed)	N
1530	chr11	123920644	123920645	rs4936891	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	11q24.2	OR10G7	rs4936891-C	0.36	9E-6	(Birth rate, additive)			Affymetrix [248210]	N
1530	chr11	123956465	123956466	rs1893767	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	LOH11CR2A	rs1893767-G	0.126	9E-6	(Sitting height )	0.03	[NR] cm increase	Illumina [899892]	N
1530	chr11	123956465	123956466	rs1893767	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	LOH11CR2A	rs1893767-G	0.126	4E-6	(Height )	0.04	[NR] cm increase	Illumina [899892]	N
1530	chr11	123982973	123982974	rs17128423	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q24.2	NR	rs17128423-?	NR	9E-7		4.908	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1530	chr11	123983348	123983349	rs17128425	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q24.2	NR	rs17128425-A	NR	2E-8		5.624	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1531	chr11	124017492	124017493	rs4936894	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	11q24.2	VWA5A	rs4936894-A	0.23	2E-6		0.09	[0.05-0.13] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1531	chr11	124037692	124037693	rs118106993	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	11q24.2		rs118106993-?	NR	3E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1531	chr11	124075786	124075787	rs3018529	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	11q24.2	NR	rs3018529-?	NR	4E-6		0.7885	[0.48-1.09] unit decrease	Affymetrix [7154205] (imputed)	N
1531	chr11	124119350	124119351	rs11219534	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.2	NR	rs11219534-?	NR	2E-6				Affymetrix [NR]	N
1533	chr11	124263573	124263574	rs185888204	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	11q24.2	OR8B3	rs185888204-A	NR	2E-7	(Perc15, Cases)	7.1	[1.22-12.98] unit decrease	Illumina [7600000] (imputed)	N
1533	chr11	124279788	124279789	rs75261250	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q24.2	OR8X1P	rs75261250-?	NR	2E-8		0.018791549	[0.012-0.025] unit decrease	NR [7306098]	N
1533	chr11	124306382	124306383	rs4935884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.2	OR8B8	rs4935884-G	0.482394	4E-8	(-56 ms)	0.0317909	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1533	chr11	124338096	124338097	rs11219666	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q24.2	OR8B4	rs11219666-?	NR	5E-6	(taurocholate)	1.689038	[0.96-2.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1533	chr11	124353255	124353256	rs79288090	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESAM	5,353 Icelandic ancestry individuals	NA	11q24.2		rs79288090-G	0.01565	3E-24		0.721509	[0.58-0.86] unit decrease	Illumina [7506463] (imputed)	N
1534	chr11	124438611	124438612	rs10893268	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	11q24.2	OR8A1	rs10893268-T		1E-6	(EA, factor score analysis)	0.069	[NR] unit decrease	Affymetrix [up to 730090]	N
1534	chr11	124461273	124461274	rs7127399	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q24.2	NR	rs7127399-?	NR	4E-9		1.0561223	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1534	chr11	124461273	124461274	rs7127399	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q24.2	NR	rs7127399-G	NR	6E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1535	chr11	124530663	124530664	rs78778622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIAE	5,360 Icelandic ancestry individuals	NA	11q24.2		rs78778622-C	0.07797	3E-19		0.321631	[0.25-0.39] unit decrease	Illumina [7506463] (imputed)	N
1535	chr11	124537994	124537995	rs544368	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	11q24.2	PAN3, SIAE, SPA17, TBRG1	rs544368-?	NR	6E-6				Affymetrix [1769948] (imputed)	N
1535	chr11	124537994	124537995	rs544368	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	11q24.2	NR	rs544368-T	0.12	6E-6		1.22	[NR]	Affymetrix [1769948] (imputed)	N
1535	chr11	124539272	124539273	rs12282107	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	11q24.2	SIAE	rs12282107-C	0.24	5E-14	(Acetylcarnitine)	0.29	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1535	chr11	124567199	124567200	rs143429471	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q24.2	NR	rs143429471-?	NR	9E-6		4.445	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1535	chr11	124606284	124606285	rs12807809	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls		NRGN	rs12807809-T	0.83	2E-9		1.15	[NR]	Illumina [314868]	N
1535	chr11	124606611	124606612	rs34716506	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q24.2		rs34716506-G	0.921	4E-10		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
1535	chr11	124611996	124611997	rs71491832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q24.2	NR	rs71491832-G	0.0758	1E-9		0.012431	[0.0084-0.0164] unit decrease	NR [9732723] (imputed)	N
1535	chr11	124612931	124612932	rs12293670	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12293670-?	NR	4E-10				NR [2625067]	N
1535	chr11	124612931	124612932	rs12293670	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		ESAM, MSANTD2, NRGN, VSIG2	rs12293670-?	NR	2E-15		1.084	[1.06-1.1]	Illumina [8000000] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	11q24.2	NR	rs55661361-A	0.3509	9E-11		0.07523035	[0.052-0.098] unit decrease	NR [NR]	N
1535	chr11	124613956	124613957	rs55661361	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11q24.2	NR	rs55661361-?		4E-10				NR [8377093]	N
1535	chr11	124613956	124613957	rs55661361	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11q24.2	NR	rs55661361-?		1E-10				NR [8377093]	N
1535	chr11	124613956	124613957	rs55661361	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q24.2	NRGN, VSIG2	rs55661361-?		2E-11				NR [6786993] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q24.2	NR	rs55661361-?	NR	5E-11		1.0624734	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q24.2	NRGN	rs55661361-?	NR	3E-10		0.013403604	[0.0092-0.0176] unit increase	NR [7306098]	N
1535	chr11	124613956	124613957	rs55661361	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q24.2	NR	rs55661361-?	NR	4E-12				Illumina [up to 5582932] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and schizophrenia (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 34,129 schizophrenia cases, 45,512 controls	NA	11q24.2		rs55661361-A	0.348	1E-7		0.047	unit decrease	Illumina [NR] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q24.2	NRGN	rs55661361-G	NR	4E-13		1.0752687	[1.06-1.09]	Illumina [6627481] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q24.2	NRGN	rs55661361-G	NR	1E-11	(EA)	1.082	[1.06-1.1]	Illumina [6627481] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q24.2	NRGN	rs55661361-G	NR	1E-12		1.0729614	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q24.2	ESAM, LOC100507283, LOC101929340, MSANTD2, NRGN, VSIG2	rs55661361-?		5E-13		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1535	chr11	124613956	124613957	rs55661361	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q24.2	NR	rs55661361-G	NR	1E-12		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1535	chr11	124613956	124613957	rs55661361	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q24.2	ESAM, MSANTD2, NRGN, VSIG2	rs55661361-G	0.665	3E-12		1.0799136	[1.06-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
1535	chr11	124619406	124619407	rs11604175	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESAM	5,362 Icelandic ancestry individuals	NA	11q24.2		rs11604175-T	0.2461	2E-32		0.244374	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1535	chr11	124619406	124619407	rs11604175	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESAM	5,353 Icelandic ancestry individuals	NA	11q24.2		rs11604175-T	0.2461	1E-20		0.187678	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
1535	chr11	124619406	124619407	rs11604175	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.2	ESAM	rs11604175-C	0.75140625	5E-22	(ESAM, 2981_9_3)	0.26416472	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1535	chr11	124619406	124619407	rs11604175	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.2	ESAM	rs11604175-C	0.75140625	3E-12	(ESAM, 7841_84_3)	0.19176777	[0.14-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1535	chr11	124620146	124620147	rs11219769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ESAM	rs11219769-T	0.264	4E-17	(Endothelial cell-selective adhesion molecule, ESAM.2981.9.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1535	chr11	124620146	124620147	rs11219769	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q24.2	VSIG2, RP11-677M14.2, NRGN, ESAM	rs11219769-T	0.2527638	8E-12	(Endothelial cell-selective adhesion molecule)	0.3347	[0.24-0.43] unit decrease	Affymetrix [509946]	N
1535	chr11	124623491	124623492	rs12541	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q24.2	NR	rs12541-?	NR	4E-6		0.0082185	[0.0047-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
1535	chr11	124626568	124626569	rs61753651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ESAM	rs61753651-A	0.005	1E-28	(Endothelial cell-selective adhesion molecule, ESAM.7841.84.3)	1.88	[1.55-2.21] unit decrease	Affymetrix [10572788] (imputed)	N
1536	chr11	124706624	124706625	rs10750291	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q24.2	LOC100507283, ROBO3	rs10750291-?	NR	1E-13		0.5359	[0.39-0.68] unit increase	Affymetrix [11100000] (imputed)	N
1536	chr11	124728122	124728123	rs11219814	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.2	NR	rs11219814-?	NR	5E-18				Affymetrix [NR]	N
1536	chr11	124749721	124749722	rs201702041	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11q24.2		rs201702041-T	0.0319	2E-11		3.4475312	[2.29-4.6] mmHg decrease	Affymetrix, Illumina [247315] (imputed)	N
1536	chr11	124756981	124756982	rs138481093	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	11q24.2	ROBO4	rs138481093-?	0.0078	9E-6				Illumina [308166]	N
1537	chr11	124821574	124821575	rs4408325	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	11q24.2	CCDC15	rs4408325-?	NR	1E-7				Affymetrix [5486770] (imputed)	N
1537	chr11	124909581	124909582	rs76239813	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	11q24.2	NR	rs76239813-A	0.016	7E-6		7.44	[3.10-17.87]	Illumina [7261187] (imputed)	N
1538	chr11	124947050	124947051	rs12289510	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	11q24.2	NR	rs12289510-G		8E-7		0.078	[0.047-0.109] SD units increase	NR [10700000] (imputed)	N
1538	chr11	124948459	124948460	rs7949048	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.2	SLC37A2	rs7949048-T	0.363556	7E-10		0.0118815	[0.0081-0.0157] unit increase	NR [13737936] (imputed)	N
1538	chr11	124948459	124948460	rs7949048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.2		rs7949048-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1538	chr11	124955976	124955977	rs3808995	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.2		rs3808995-?	NR	8E-12		0.0142841	[0.01-0.018] unit increase	Affymetrix [20259828] (imputed)	N
1538	chr11	124965132	124965133	rs4935904	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	11q24.2	TMEM218	rs4935904-T	0.129	6E-6		1.45	[1.23-1.70]	Illumina [8672852] (imputed)	N
1538	chr11	124984854	124984855	rs663734	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	11q24.2	LOC399965	rs663734-?	NR	5E-6		2.254	[1.32-3.18] unit decrease	Illumina [498648]	N
1538	chr11	124992834	124992835	rs582240	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	11q24.2	KRT18P59	rs582240-?	NR	6E-8		0.43	[NR]	Illumina [5729117] (imputed)	N
1538	chr11	125019536	125019537	rs61910992	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q24.2		rs61910992-T	0.3	1E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
1538	chr11	125024115	125024116	rs35355295	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.2		rs35355295-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1539	chr11	125054792	125054793	rs138466039	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q24.2	NR	rs138466039-T	NR	2E-11		1.324	[1.22-1.44]	Affymetrix, Illumina [29235255] (imputed)	N
1539	chr11	125054792	125054793	rs138466039	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q24.2	PKNOX2	rs138466039-T	0.01	2E-11		1.32	[1.22-1.44]	Illumina [20370935] (imputed)	N
1539	chr11	125065525	125065526	rs10893348	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.2	PKNOX2	rs10893348-C	0.565531	6E-15		0.0146179	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1539	chr11	125065525	125065526	rs10893348	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.2		rs10893348-?	NR	3E-18		0.0176381	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1539	chr11	125069566	125069567	rs7103543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.2		rs7103543-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1539	chr11	125071162	125071163	rs648090	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	11q24.2	PKNOX2	rs648090-A	0.71	2E-12		1.15	[1.10-1.20]	Illumina [at least 371504] (imputed)	N
1539	chr11	125081520	125081521	rs618888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q24.2	NR	rs618888-T	0.282964	4E-8		0.00774245	[0.005-0.0105] unit increase	Affymetrix [16578495] (imputed)	N
1539	chr11	125081520	125081521	rs618888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	11q24.2	NR	rs618888-T	0.283341	1E-12		0.0231623	[0.017-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1539	chr11	125081520	125081521	rs618888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	11q24.2	NR	rs618888-T	0.282819	7E-13		0.0155739	[0.011-0.02] unit increase	Affymetrix [16583148] (imputed)	N
1539	chr11	125081520	125081521	rs618888	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	11q24.2	NR	rs618888-T	0.283443	1E-18		0.0284465	[0.022-0.035] unit increase	Affymetrix [16577424] (imputed)	N
1539	chr11	125097266	125097267	rs77467703	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	11q24.2	PKNOX2	rs77467703-?	NR	4E-6		1.2586	unit decrease	Affymetrix [NR] (imputed)	N
1539	chr11	125100437	125100438	rs7107770	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	11q24.2	PKNOX2	rs7107770-?	NR	1E-10		1.0928961	[1.06-1.12]	Illumina [13729857] (imputed)	N
1539	chr11	125144425	125144426	rs117015177	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-hexaose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	11q24.2		rs117015177-?	NR	4E-9				Illumina [1128286]	N
1539	chr11	125170638	125170639	rs1426153	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	11q24.2	PKNOX2	rs1426153-?	NR	2E-6				Illumina [805814]	N
1539	chr11	125172382	125172383	rs1077952	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	11q24.2	PKNOX2	rs1077952-A	0.11	5E-6		1.45		Illumina [8974355] (imputed)	N
1539	chr11	125172592	125172593	rs750338	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	11q24.2	PKNOX2	rs750338-?		2E-6	(additive)	0.228	[0.13-0.32] unit decrease	Illumina [974863]	N
1539	chr11	125172592	125172593	rs750338	21703634	Wang KS	2011-06-22	J Psychiatr Res	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Alcohol dependence	1,283 European ancestry cases, 1,416 European ancestry controls	1,650 European ancestry cases and 1,684 European ancestry controls from 778 nuclear families	11q24.2	PKNOX2	rs750338-C	0.22	1E-6				Illumina [up to 818773]	N
1540	chr11	125178402	125178403	rs10893366	21956439	Zuo L	2011-09-28	Neuropsychopharmacology	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	11q24.2	PKNOX2	rs10893366-?	NR	8E-6	(EA + AA)			Illumina [805814]	N
1540	chr11	125179852	125179853	rs12284594	21298047	Chen X	2011-01-27	PLoS One	The nuclear transcription factor PKNOX2 is a candidate gene for substance dependence in European-origin women.	Substance dependence	2,524 European ancestry individuals, 1,103 African ancestry individuals	NA	11q24.2	PKNOX2	rs12284594-G	NR	7E-8	(EA women)	1.77	[NR]	Illumina [830696]	N
1540	chr11	125193595	125193596	rs11601321	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	11q24.2	PKNOX2	rs11601321-?		8E-6		1.63	[NR]	Illumina [803323]	N
1540	chr11	125219772	125219773	rs111615748	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.2	NR	rs111615748-G	0.01045	3E-8	(PRDX5)	0.4955	NR unit decrease	Illumina [1671387] (imputed)	N
1540	chr11	125241045	125241046	rs12273350	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	11q24.2	NR	rs12273350-?	NR	2E-6				Affymetrix [287554]	N
1540	chr11	125259299	125259300	rs731716	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	11q24.2	PKNOX2	rs731716-?	NR	5E-6	(EA)	1.96	[1.12-2.8] unit increase	Affymetrix, Illumina [2033301]	N
1540	chr11	125259423	125259424	rs2059614	25890600	Guo Q	2015-04-18	J Natl Cancer Inst	Identification of novel genetic markers of breast cancer survival.	Breast cancer (survival)	23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases		11q24.2	HEPACAM, HEPN1, CCDC15, SLC37A2, TMEM218, FEZ1, MGC39545, STT3A, CHEK1, ACRV1, PATE1, PATE2, PATE3, PATE4, HYLS1, PKNOX2, ROBO4	rs2059614-?	0.06	1E-9	(ER -ve)	1.9	[1.54-2.33]	Affymetrix, Illumina [9000000] (imputed)	N
1540	chr11	125269339	125269340	rs1991321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q24.2	NR	rs1991321-A	NR	4E-9		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1540	chr11	125277493	125277494	rs7112365	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.2	PKNOX2	rs7112365-A	0.07	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1540	chr11	125304008	125304009	rs1783925	22648509	Wang KS	2012-05-31	J Mol Neurosci	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NA	11q24.2	PKNOX2	rs1783925-?	0.70	4E-7		1.39	[NR]	Affymetrix [729454]	N
1541	chr11	125313598	125313599	rs7930295	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	11q24.2	FEZ1	rs7930295-G	0.86	3E-6	(EA)	1.3	[NR]	NR [1085772] (imputed)	N
1541	chr11	125323964	125323965	rs11220082	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	11q24.2	FEZ1, El24, PKNOX2	rs11220082-?	NR	7E-7		1.1	[NR]	Affymetrix [745006]	N
1541	chr11	125342129	125342130	rs669052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.2		rs669052-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1541	chr11	125344534	125344535	rs2845847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.2		rs2845847-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1541	chr11	125344890	125344891	rs564626821	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11q24.2		rs564626821-T	0.0029281	2E-7		0.31996	[0.2-0.44] unit decrease	Affymetrix [15580782] (imputed)	N
1541	chr11	125353488	125353489	rs2849222	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q24.2		rs2849222-C	0.29	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
1541	chr11	125385679	125385680	rs118093992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	11q24.2		rs118093992-T	NR	2E-17		0.039	[0.03-0.048] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1541	chr11	125386142	125386143	rs558816	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	11q24.2	NR	rs558816-C	0.7281	8E-7		0.6143	[0.37-0.86] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1541	chr11	125415935	125415936	rs2849225	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.2		rs2849225-?	NR	1E-11		0.0210097	[0.015-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1541	chr11	125420312	125420313	rs151105692	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	11q24.2	FEZ1	rs151105692-?	NR	5E-19		0.0037	[0.0025-0.0049] unit increase	Affymetrix [21347608] (imputed)	N
1541	chr11	125420312	125420313	rs151105692	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	11q24.2	FEZ1	rs151105692-?	NR	5E-10		0.004	[0.0022-0.0058] unit increase	Affymetrix [21347608] (imputed)	N
1541	chr11	125424262	125424263	rs533586690	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	11q24.2	EI24	rs533586690-T	0.0029	5E-6		0.3593	[0.21-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1541	chr11	125426322	125426323	rs11512640	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11q24.2	NR	rs11512640-?	NR	9E-7	(AA)	30.22	[27.91-32.53]	Illumina [905956]	N
1541	chr11	125429980	125429981	rs73017762	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11q24.2	NR	rs73017762-C	NR	1E-6	(GEE model)	1.0541	[0.63-1.48] unit decrease	NR [NR] (imputed)	N
1542	chr11	125443001	125443002	rs76118307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	11q24.2		rs76118307-G	NR	3E-10		0.0312	[0.022-0.041] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1542	chr11	125452080	125452081	rs11220136	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	11q24.2	EI24	rs11220136-T	0.066	2E-8		5.65	z-score increase	Affymetrix [4312306] (imputed)	N
1542	chr11	125455821	125455822	rs11220138	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11q24.2	NR	rs11220138-?	NR	1E-6	(AA)	31.08	[28.75-33.41]	Illumina [905956]	N
1542	chr11	125461033	125461034	rs1293672	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.2	STT3A-AS1	rs1293672-A	0.119753	2E-10		0.0180824	[0.012-0.024] unit decrease	NR [13737936] (imputed)	N
1542	chr11	125461496	125461497	rs545673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q24.2		rs545673-G	NR	3E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1542	chr11	125461496	125461497	rs545673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q24.2		rs545673-G	NR	3E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1542	chr11	125461708	125461709	rs548181	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	11q24.2	STT3A	rs548181-?	0.884	9E-7	(Modelling analysis)			NR [1252901] (imputed)	N
1542	chr11	125461708	125461709	rs548181	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11q24.2	STT3A	rs548181-G	0.88	1E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [1252901] (imputed)	N
1542	chr11	125465286	125465287	rs554552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs554552-T	0.581071	6E-11				Affymetrix, Illumina [20825802] (imputed)	N
1542	chr11	125510256	125510257	rs113301858	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	11q24.2	CHEK1	rs113301858-T	0.953241896	7E-6		1.2050368	[1.11-1.31]	Illumina [10439017] (imputed)	N
1542	chr11	125550958	125550958	rs35513824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.2	ACRV1	rs35513824-TA	0.824594	1E-10		0.01938251	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1543	chr11	125623185	125623186	rs497764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q24.2	PATE1	rs497764-T	0.887671	2E-12		0.024993636	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1543	chr11	125626773	125626774	rs1941367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.2		rs1941367-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1543	chr11	125638647	125638648	rs10893424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q24.2	NR	rs10893424-C	0.359652	4E-12		0.013926	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1543	chr11	125642221	125642222	rs7110899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q24.2	NR	rs7110899-C	0.506449	3E-10		0.011416	[0.0079-0.015] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1543	chr11	125661091	125661092	rs73026046	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	11q24.2	NR	rs73026046-C	NR	8E-6	(GEE model)	0.7973	[0.45-1.15] unit decrease	NR [NR] (imputed)	N
1544	chr11	125698653	125698654	rs875500	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	PATE4	rs875500-A	0.72	1E-75	(Prostate and testis expressed protein 4, PATE4.8065.245.3)	0.48	[0.42-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
1544	chr11	125708836	125708837	rs11220237	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	11q24.2	PATE4	rs11220237-T	NR	9E-6	(men)	0.0256566	[0.014-0.037] unit increase	Illumina [13520550] (imputed)	N
1544	chr11	125772876	125772877	rs11220270	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.2	HYLS1, PUS3, DDX25	rs11220270-A	0.987533	2E-8	(74 ms)	0.139932	[0.09-0.189] unit decrease	Affymetrix [10000000] (imputed)	N
1544	chr11	125777371	125777372	rs11220271	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	11q24.2	Intergenic	rs11220271-A	NR	5E-7	(between families)	5.033	unit increase	Affymetrix [up to 15107142] (imputed)	N
1544	chr11	125793688	125793689	rs499519	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	11q24.2	DDX25	rs499519-?		2E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
1544	chr11	125824736	125824737	rs948113	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q24.2	LOC338667	rs948113-?		9E-6				Illumina [4322238] (imputed)	N
1544	chr11	125825223	125825224	rs12222197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q24.2		rs12222197-T	NR	6E-22		0.0126	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1544	chr11	125825223	125825224	rs12222197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q24.2		rs12222197-T	0.391269	2E-9		0.0124106	[0.0084-0.0165] unit increase	Illumina [13479295] (imputed)	N
1544	chr11	125825223	125825224	rs12222197	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	11q24.2	VSIG10L2	rs12222197-T	0.5812	7E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix [18391927] (imputed)	N
1544	chr11	125825223	125825224	rs12222197	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q24.2	DDX25, CDON	rs12222197-?	NR	1E-9		0.01788617	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
1544	chr11	125825223	125825224	rs12222197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.2		rs12222197-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1544	chr11	125826701	125826702	rs4937076	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		11q24.2	CDON	rs4937076-A	NR	4E-8		0.15	[0.097-0.203] unit decrease	Illumina [2446724] (imputed)	N
1545	chr11	125838911	125838912	rs603564	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q24.2	CDON	rs603564-?		7E-6				Illumina [4322238] (imputed)	N
1545	chr11	125840144	125840145	rs183951714	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	11q24.2	CDON	rs183951714-T	0.011	7E-7		1.66	[1.36-2.02]	Illumina [1438399] (imputed)	N
1545	chr11	125841077	125841078	rs12295584	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	11q24.2	CDON	rs12295584-A	NR	5E-8		1.07	[-0.5764-2.7164] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
1545	chr11	125841077	125841078	rs12295584	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	11q24.2	CDON	rs12295584-A	0.95	1E-7	(African)	1.512	[-0.40547-3.42947] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
1545	chr11	125852382	125852383	rs551851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q24.2		rs551851-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1545	chr11	125852382	125852383	rs551851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q24.2		rs551851-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1545	chr11	125867895	125867896	rs10893460	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	11q24.2	6 CDON	rs10893460-A	0.269	5E-6		0.0512	[0.029-0.073] unit decrease	NR [4841651] (imputed)	N
1545	chr11	125869965	125869966	rs575334	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q24.2	NR	rs575334-T	0.384973	2E-9		0.0190526	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1545	chr11	125873101	125873102	rs7104745	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	11q24.2	KIRREL3	rs7104745-G	0.458	6E-6		0.07	[0.039-0.101] cup size increase	Illumina [7422970] (imputed)	N
1545	chr11	125889525	125889526	rs3740909	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	11q24.2	CDON	rs3740909-T	0.07301108	4E-25	(Cell adhesion molecule-related/down-regulated by oncogenes)	0.8286	[0.68-0.98] unit decrease	Affymetrix [509946]	N
1545	chr11	125889895	125889896	rs562022020	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	CDON	rs562022020-T	0.086	4E-86	(Cell adhesion molecule-related/down-regulated by oncogenes, CDON.4541.49.2)	0.83	[0.75-0.91] unit decrease	Affymetrix [10572788] (imputed)	N
1545	chr11	125891705	125891706	rs78196034	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDON	5,367 Icelandic ancestry individuals	NA	11q24.2		rs78196034-C	0.07541	2E-80		0.664542	[0.6-0.73] unit decrease	Illumina [7506463] (imputed)	N
1545	chr11	125897839	125897840	rs60929339	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.2	CDON	rs60929339-G	0.9275	2E-48	(CDON, 4541_49_2)	0.6862522	[0.6-0.78] unit increase	Illumina [> 1000000] (imputed)	N
1545	chr11	125905257	125905258	rs472926	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	11q24.2	CDON	rs472926-C	0.15	3E-6				Affymetrix [614963]	N
1545	chr11	125921473	125921474	rs181269289	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	11q24.2	CDON	rs181269289-T	0.9929	4E-7		0.2863	[0.18-0.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1545	chr11	125921473	125921474	rs181269289	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	11q24.2	CDON	rs181269289-T	0.9929	4E-6		0.2584	[0.15-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1546	chr11	125981568	125981569	rs511987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.2		rs511987-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1546	chr11	125983463	125983464	rs562672	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q24.2	RPUSD4	rs562672-?	NR	7E-6	(carnitine)	0.23367436	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1546	chr11	125988744	125988745	rs10893483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs10893483-G	NR	3E-11		0.0253	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1546	chr11	125988744	125988745	rs10893483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs10893483-G	NR	5E-9		0.0223	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1546	chr11	125998028	125998029	rs74734297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs74734297-A	NR	6E-10		0.0632	[0.043-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1546	chr11	126008909	126008910	rs567508	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	11q24.2	CDON, RPUSD4	rs567508-A	0.8496	5E-10		0.034	[0.024-0.044] unit increase	Affymetrix [up to 27624732] (imputed)	N
1546	chr11	126009499	126009500	rs541601	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	11q24.2	RPUSD4	rs541601-T	0.1829	1E-13		0.0241	[0.018-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1546	chr11	126009499	126009500	rs541601	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	11q24.2	RPUSD4	rs541601-T	0.1829	5E-15		0.0241	[0.018-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1546	chr11	126009499	126009500	rs541601	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	11q24.2	RPUSD4	rs541601-T	0.1829	1E-10		0.0195	[0.014-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1546	chr11	126009499	126009500	rs541601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q24.2		rs541601-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1546	chr11	126012950	126012951	rs10219303	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	11q24.2	NR	rs10219303-?	NR	8E-6	(Chao1 richness estimate)	0.923882	[0.52-1.33] unit increase	Illumina [5293637] (imputed)	N
1546	chr11	126014573	126014574	rs2322192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q24.2	NR	rs2322192-A	0.30802	7E-10		0.01481475	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1546	chr11	126016484	126016485	rs11606126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q24.2	NR	rs11606126-A	0.311411	7E-11		0.01296	[0.0091-0.0169] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1546	chr11	126017058	126017059	rs111977000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.2		rs111977000-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1546	chr11	126024041	126024042	rs61898819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q24.2		rs61898819-A	0.244922	2E-11		0.01734225	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1546	chr11	126024041	126024042	rs61898819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q24.2	NR	rs61898819-A	0.243521	7E-12		0.015428	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1546	chr11	126024041	126024042	rs61898819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q24.2		rs61898819-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1546	chr11	126028716	126028717	rs563519	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	11q24.2	RPUSD4	rs563519-?	0.66	3E-6	(AA)	1.45	[0.97-2.17]	Affymetrix, Illumina [2478304] (imputed)	N
1546	chr11	126030614	126030615	rs10501858	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	11q24.2	NR	rs10501858-?	0.091	1E-6		1.539	[1.295-1.829] unit increase	Illumina [563945]	N
1546	chr11	126045829	126045830	rs7105310	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	11q24.2	RPUSD4	rs7105310-G	0.1072	7E-6		0.3841	[0.22-0.55] unit increase	Illumina [8203257] (imputed)	N
1546	chr11	126047424	126047425	rs520461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.2		rs520461-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1546	chr11	126051315	126051316	rs530213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs530213-T	NR	9E-18		0.0214	[0.017-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1546	chr11	126057373	126057374	rs630707	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.2	NR	rs630707-?	NR	3E-8	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1546	chr11	126059421	126059422	rs686646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q24.2		rs686646-C	NR	6E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1546	chr11	126060665	126060666	rs670712	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIRAP	5,360 Icelandic ancestry individuals	NA	11q24.2		rs670712-A	0.4418	3E-10		0.118076	[0.081-0.155] unit decrease	Illumina [7506463] (imputed)	N
1546	chr11	126071348	126071349	rs111577916	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.2	TIRAP	rs111577916-G	0.9803125	9E-16	(TIRAP, 9839_148_3)	0.7240378	[0.55-0.9] unit increase	Illumina [> 1000000] (imputed)	N
1546	chr11	126071348	126071349	rs111577916	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	TIRAP	rs111577916-T	0.025	2E-13	(Toll/interleukin-1 receptor domain-containing adapter protein, TIRAP.9839.148.3)	0.57	[0.41-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1546	chr11	126074191	126074192	rs2276312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs2276312-G	NR	7E-13		0.0267	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1546	chr11	126079384	126079385	rs75453040	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	11q24.2		rs75453040-?	NR	8E-7		26.7083	[25.4-28.01]	NR [666300]	N
1547	chr11	126099837	126099838	rs78599054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs78599054-A	NR	3E-13		0.07	[0.051-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1547	chr11	126101610	126101611	rs79327334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs79327334-G	NR	2E-13		0.0948	[0.07-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126101610	126101611	rs79327334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs79327334-G	NR	1E-9		0.0788	[0.054-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1547	chr11	126135138	126135139	rs2242391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.2	NR	rs2242391-T	NR	7E-10		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126135138	126135139	rs2242391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q24.2	NR	rs2242391-T	NR	1E-16		0.0308	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126135138	126135139	rs2242391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs2242391-T	NR	2E-18		0.0327	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIRAP	5,360 Icelandic ancestry individuals	NA	11q24.2		rs8177399-T	0.01786	2E-23		0.701546	[0.56-0.84] unit decrease	Illumina [7506463] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.2	NR	rs8177399-T	NR	7E-17		0.07	[0.054-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs8177399-T	NR	8E-11		0.0546	[0.038-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q24.2	NR	rs8177399-T	NR	7E-22		0.0807	[0.064-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q24.2	NR	rs8177399-T	NR	3E-10		0.0554	[0.038-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1547	chr11	126160825	126160826	rs8177399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs8177399-T	NR	5E-22		0.0811	[0.065-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126163611	126163612	rs8177376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs8177376-G	NR	7E-35		0.034	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1547	chr11	126163611	126163612	rs8177376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs8177376-G	NR	3E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1547	chr11	126163611	126163612	rs8177376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q24.2	TIRAP	rs8177376-G	0.2492	3E-12		0.02882708	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1547	chr11	126163611	126163612	rs8177376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q24.2	TIRAP	rs8177376-G	0.2492	1E-10		0.02658632	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1547	chr11	126181846	126181847	rs73017394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q24.2	DCPS	rs73017394-A	0.241153	2E-16		0.02127411	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1547	chr11	126181846	126181847	rs73017394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.2	DCPS	rs73017394-A	0.241158	3E-9		0.015434138	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr11	126186311	126186312	rs73017399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	11q24.2	DCPS	rs73017399-C	0.243	5E-10		0.02595937	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1547	chr11	126188404	126188405	rs672806	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs672806-A	0.4	1E-34		0.0998	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1547	chr11	126197025	126197026	rs604255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q24.2		rs604255-T	NR	3E-14		0.0156	[0.012-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1547	chr11	126197025	126197026	rs604255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.2	DCPS	rs604255-T	0.235754	5E-20		0.024003731	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr11	126197025	126197026	rs604255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.2	DCPS	rs604255-T	0.23576	3E-18		0.022838647	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1547	chr11	126197025	126197026	rs604255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs604255-T	0.203451	4E-17				Affymetrix, Illumina [19872809] (imputed)	N
1547	chr11	126197025	126197026	rs604255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q24.2	NR	rs604255-T	0.235838	3E-20		0.021647	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1547	chr11	126197025	126197026	rs604255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q24.2		rs604255-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1547	chr11	126208377	126208378	rs7115672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.2		rs7115672-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1547	chr11	126211726	126211727	rs2401	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	11q24.2	ST3GAL4	rs2401-T	0.85	5E-8	(BMI adjusted)	0.079	[0.052-0.106] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1547	chr11	126213394	126213395	rs240536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q24.2		rs240536-C	NR	4E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1547	chr11	126218540	126218541	rs17135399	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	11q24.2	ST3GAL4	rs17135399-A	0.934	2E-22	(Trans-ethnic initial)	0.0797	[0.063-0.096] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1548	chr11	126223117	126223117	rs751544923	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	11q24.2		rs751544923-AG	0.94265	8E-11		0.0559005	[0.039-0.073] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126223117	126223117	rs751544923	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	11q24.2		rs751544923-AG	0.94265	2E-10		0.0544551	[0.038-0.071] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126223117	126223117	rs751544923	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	11q24.2		rs751544923-AG	0.94265	1E-15		0.0707015	[0.053-0.088] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126223117	126223117	rs751544923	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs751544923-AG	0.94265	1E-9		0.051977	[0.035-0.069] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126223117	126223117	rs751544923	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs751544923-AG	0.94265	3E-10		0.0541292	[0.037-0.071] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928631	5E-21		0.0750911	[0.059-0.091] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	8E-13		0.0516084	[0.037-0.066] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-8		0.0410276	[0.026-0.056] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-20		0.0647799	[0.051-0.079] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	4E-11		0.0474153	[0.033-0.061] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	8E-23		0.0775621	[0.062-0.093] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928605	3E-12		0.0560968	[0.04-0.072] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928622	6E-21		0.0691033	[0.055-0.084] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928631	7E-17		0.0648303	[0.05-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	5E-15		0.0562912	[0.042-0.07] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	2E-21		0.0670279	[0.053-0.081] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-11		0.0480885	[0.034-0.062] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	6E-12		0.0492501	[0.035-0.063] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-11		0.0527245	[0.037-0.068] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928622	1E-21		0.0677691	[0.054-0.082] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-9		0.0420625	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928631	2E-22		0.0774553	[0.062-0.093] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	4E-9		0.0429592	[0.029-0.057] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	5E-18		0.0607698	[0.047-0.075] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-10		0.0447917	[0.031-0.059] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	1E-9		0.0439913	[0.03-0.058] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	2E-8		0.0415921	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	2E-18		0.0614969	[0.048-0.075] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	2E-16		0.0648289	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	7E-12		0.0492978	[0.035-0.063] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	9E-10		0.0452833	[0.031-0.06] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	4E-19		0.0631505	[0.049-0.077] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	3E-12		0.0500495	[0.036-0.064] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928622	9E-12		0.0520231	[0.037-0.067] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	11q24.2		rs112771035-C	0.928631	2E-10		0.0501019	[0.035-0.065] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	1E-10		0.0464026	[0.032-0.061] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	1E-9		0.0450131	[0.031-0.059] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	6E-19		0.0627279	[0.049-0.077] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	11q24.2		rs112771035-C	0.92863	2E-24		0.0724883	[0.059-0.086] unit increase	NR [11722792] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LYVE1	5,330 Icelandic ancestry individuals	NA	11q24.2		rs112771035-G	0.05118	4E-20		0.322993	[0.25-0.39] unit increase	Illumina [7506463] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	11q24.2		rs112771035-G	NR	1E-12		0.0614	[0.045-0.078] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	11q24.2		rs112771035-G	NR	8E-17		0.0313	[0.024-0.039] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	11q24.2	ST3GAL4	rs112771035-C	0.93	2E-14		7.66	z-score increase	Affymetrix [4314223] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q24.2	ST3GAL4	rs112771035-C	0.927948	8E-18		0.0316396	[0.024-0.039] unit increase	Affymetrix [NR] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	11q24.2	ST3GAL4	rs112771035-C	0.928124	1E-49		0.0596688	[0.052-0.068] unit decrease	Affymetrix [NR] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	11q24.2	ST3GAL4	rs112771035-C	0.927968	2E-10		0.0240716	[0.017-0.032] unit increase	Affymetrix [NR] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	11q24.2	ST3GAL4	rs112771035-?	NR	8E-55		0.0772	[0.069-0.086] unit increase	Affymetrix [5701386] (imputed)	N
1548	chr11	126225875	126225876	rs112771035	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	11q24.2	ST3GAL4	rs112771035-G	0.0718487	2E-10		0.06858551	[0.047-0.09] unit increase	Affymetrix [7288503] (imputed)	N
1548	chr11	126226774	126226775	rs73632737	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP19	5,359 Icelandic ancestry individuals	NA	11q24.2		rs73632737-C	0.05216	5E-19		0.356374	[0.28-0.43] unit increase	Illumina [7506463] (imputed)	N
1548	chr11	126227025	126227026	rs1893351	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	11q24.2	NR	rs1893351-C	0.971758	4E-10		0.0371287	[0.026-0.049] unit increase	Affymetrix [15000001]	N
1548	chr11	126227722	126227723	rs7928577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	11q24.2		rs7928577-T	NR	6E-37		0.0463	[0.039-0.053] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1548	chr11	126227722	126227723	rs7928577	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q24.2	NR	rs7928577-T	0.07379	3E-37		0.005488	[0.0046-0.0063] unit decrease	Affymetrix [NR] (imputed)	N
1548	chr11	126227722	126227723	rs7928577	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q24.2	ST3GAL4	rs7928577-?		2E-13		0.0455	[0.033-0.058] unit decrease	Illumina [31500000] (imputed)	N
1548	chr11	126227722	126227723	rs7928577	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q24.2	TIRAP	rs7928577-T	0.08	2E-12		0.26	unit increase	Illumina [5270624] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-15		0.0619824	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927129	2E-10		0.0475112	[0.033-0.062] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	8E-10		0.0465295	[0.032-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-13		0.0539948	[0.039-0.069] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-9		0.0453626	[0.03-0.06] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-8		0.0441339	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-8		0.0424022	[0.027-0.058] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-10		0.0494226	[0.034-0.065] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-13		0.0578717	[0.043-0.073] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-17		0.0661755	[0.051-0.082] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-12		0.0547047	[0.039-0.07] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-19		0.0705789	[0.055-0.086] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-14		0.0591662	[0.044-0.075] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-9		0.0456555	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-16		0.0638814	[0.048-0.079] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-15		0.0620309	[0.047-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-14		0.059873	[0.044-0.075] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-8		0.043321	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-10		0.04941	[0.034-0.065] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-16		0.0647395	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-14		0.0604952	[0.045-0.076] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-14		0.0611951	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-20		0.0728947	[0.057-0.088] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-9		0.0455209	[0.031-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	6E-16		0.0637828	[0.048-0.079] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	8E-12		0.053511	[0.038-0.069] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-17		0.0672503	[0.052-0.083] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-15		0.0619681	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-11		0.0518827	[0.037-0.067] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-8		0.0418253	[0.027-0.057] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-17		0.0671874	[0.052-0.083] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	8E-15		0.0615804	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	6E-17		0.066381	[0.051-0.082] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-10		0.0486337	[0.034-0.064] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	6E-13		0.056554	[0.041-0.072] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-12		0.0547944	[0.04-0.07] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-13		0.0573045	[0.042-0.073] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-16		0.0658251	[0.05-0.081] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-14		0.0601646	[0.045-0.076] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-16		0.0649672	[0.049-0.081] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-14		0.0611215	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-13		0.0579347	[0.043-0.073] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-16		0.0643882	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	5E-16		0.0640451	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-9		0.0458519	[0.03-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-15		0.0614593	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	6E-21		0.0742618	[0.059-0.09] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-17		0.0680335	[0.052-0.084] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-18		0.0689669	[0.053-0.085] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-14		0.0586434	[0.043-0.074] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	6E-13		0.0566734	[0.041-0.072] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	4E-16		0.0646094	[0.049-0.08] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-15		0.0623488	[0.047-0.078] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-11		0.05249	[0.037-0.068] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	7E-20		0.0723137	[0.057-0.088] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-17		0.0681145	[0.053-0.084] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-14		0.0612116	[0.046-0.077] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	2E-18		0.0695868	[0.054-0.085] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	3E-12		0.0539713	[0.039-0.069] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	11q24.2		rs59379014-C	0.927136	1E-16		0.0655379	[0.05-0.081] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs59379014-T	0.077	1E-15		0.1117	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs59379014-T	0.0926009	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	11q24.2	ST3GAL4	rs59379014-C	0.926689	3E-43		0.0551759	[0.047-0.063] unit decrease	Affymetrix [NR] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs59379014-C	NR	6E-14		0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs59379014-C	0.926	2E-13	(EA)	0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs59379014-C	NR	2E-18		0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126227999	126228000	rs59379014	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs59379014-C	0.926	4E-17	(EA)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs4937122-T	0.925892	1E-13		0.057706	[0.042-0.073] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs4937122-T	0.925892	5E-10		0.0475067	[0.033-0.062] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	3E-31		0.0519	[0.043-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	4E-54		0.0692	[0.06-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	9E-13		0.0333	[0.024-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	2E-40		0.062	[0.053-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	1E-13		0.0332	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	11q24.2	NR	rs4937122-G	NR	2E-55		0.0702	[0.061-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126228658	126228659	rs4937122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q24.2	NR	rs4937122-G	0.078592	5E-11		0.023591	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1548	chr11	126229616	126229617	rs73632745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q24.2		rs73632745-T	NR	9E-38		0.0611	[0.052-0.071] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1548	chr11	126229616	126229617	rs73632745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.2	ST3GAL4	rs73632745-T	0.073938	6E-11		0.027787063	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1548	chr11	126232336	126232337	rs4055121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	11q24.2		rs4055121-C	0.864414	2E-8		0.0330788	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1548	chr11	126232336	126232337	rs4055121	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ST3GAL4	rs4055121-T	0.14	6E-14	(Immunoglobulin superfamily containing leucine-rich repeat protein 2, ISLR2.13124.20.3)	0.27	[0.19-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1548	chr11	126232384	126232385	rs3967200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs3967200-C	0.864391	6E-16		0.0488945	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126232384	126232385	rs3967200	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs3967200-T	0.15	6E-13		0.08	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126232384	126232385	rs3967200	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	11q24.2	ST3GAL4	rs3967200-C	0.876	9E-28	(plasma glycan peak 17)	0.4855	[0.4-0.57] unit decrease	Illumina [8557543] (imputed)	N
1548	chr11	126233668	126233669	rs7952602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	11q24.2		rs7952602-C	NR	4E-24		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1548	chr11	126234819	126234820	rs78689694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	11q24.2		rs78689694-G	0.866653	1E-13		0.0437704	[0.032-0.055] unit increase	NR [11722792] (imputed)	N
1548	chr11	126234819	126234820	rs78689694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	11q24.2		rs78689694-G	0.866638	2E-8		0.0326453	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126234819	126234820	rs78689694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	11q24.2		rs78689694-G	0.866638	2E-12		0.0405572	[0.029-0.052] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126234819	126234820	rs78689694	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	11q24.2	ST3GAL4	rs78689694-C	0.105	2E-12		0.05	[0.06-0.03] unit decrease	Illumina [NR] (imputed)	N
1548	chr11	126234819	126234820	rs78689694	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q24.2	ST3GAL4	rs78689694-?	NR	2E-10		0.019088306	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
1548	chr11	126235666	126235667	rs6590199	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q24.2	ST3GAL4	rs6590199-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126238632	126238633	rs74612335	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11q24.2	NR	rs74612335-?	NR	6E-26		0.04903	[0.04-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1548	chr11	126238831	126238832	rs60843925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ST3GAL4	rs60843925-C	0.141	3E-14	(Transmembrane protein 132C, TMEM132C.7173.141.3)	0.27	[0.19-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1548	chr11	126239143	126239143	rs68055275	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q24.2	ST3GAL4	rs68055275-?	0.8648	3E-18		0.0349	[0.027-0.043] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1548	chr11	126239143	126239143	rs68055275	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	11q24.2	ST3GAL4	rs68055275-?	0.8648	1E-20		0.0373	[0.029-0.045] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1548	chr11	126239143	126239143	rs68055275	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ST3GAL4	rs68055275-CT	0.146	1E-11	(Semaphorin-3G, SEMA3G.5628.21.3)	0.24	[0.16-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1548	chr11	126241852	126241856	rs72085277	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	11q24.2		rs72085277-T	0.141	6E-8		1.11		Affymetrix [15679186] (imputed)	N
1548	chr11	126241855	126241859	rs141200184	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q24.2	ST3GAL4	rs141200184-?		1E-9		0.0592	[0.04-0.078] unit decrease	Illumina [31500000] (imputed)	N
1548	chr11	126241978	126241979	rs10893499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs10893499-G	NR	3E-17		0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126241978	126241979	rs10893499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs10893499-G	0.876	2E-15	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126241978	126241979	rs10893499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs10893499-G	NR	1E-22		0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126241978	126241979	rs10893499	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs10893499-G	0.876	3E-20	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126242911	126242912	rs3862628	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	11q24.2	ST3GAL4	rs3862628-A	0.23	6E-13	(Interleukin-6 receptor subunit beta, IL6ST.2620.4.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1548	chr11	126242975	126242976	rs78411544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs78411544-C	NR	5E-44		0.0853	[0.073-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126243129	126243130	rs11220461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs11220461-A	NR	2E-22		0.0653	[0.052-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126243648	126243649	rs3862630	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	11q24.2	ST3GAL4	rs3862630-T	0.12	1E-8		1.13	[1.1-1.15]	Illumina [at least 560000] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	11q24.2		rs11220462-A	0.1823	3E-8		1.2412	[0.8-1.68] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220462-G	NR	4E-17		0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220462-G	0.88	1E-15	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220462-G	NR	2E-22		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220462-G	0.88	3E-20	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	11q24.2	ST3GAL4	rs11220462-A	0.142	2E-15	(Trans-ethnic initial)	0.0474	[0.036-0.059] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.2	ST3GAL4	rs11220462-A	0.14	7E-21		0.059	[NR] unit increase	NR [NR] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	11q24.2	ST3GAL4	rs11220462-A	0.14	6E-15		0.047	[NR] unit increase	NR [NR] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	11q24.2	ST3GAL4	rs11220462-A	0.14	1E-15		1.95	[1.44-2.46] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1548	chr11	126243951	126243952	rs11220462	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	11q24.2	ST3GAL4	rs11220462-T	0.11	2E-11		2.01	[1.36-2.66] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1548	chr11	126244172	126244173	rs656841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	11q24.2		rs656841-G	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1548	chr11	126244172	126244173	rs656841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.2	NR	rs656841-G	NR	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126244172	126244173	rs656841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q24.2	NR	rs656841-G	0.630323	4E-10		0.012532	[0.0086-0.0165] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	5E-9		0.0384728	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	3E-8		0.0360594	[0.023-0.049] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	1E-8		0.0369653	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	2E-9		0.0387827	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	3E-13		0.048323	[0.035-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	1E-14		0.0512831	[0.038-0.064] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	1E-10		0.0420702	[0.029-0.055] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	4E-10		0.0407294	[0.028-0.053] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	4E-13		0.0482962	[0.035-0.061] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	11q24.2		rs4307732-G	0.894067	2E-10		0.0413376	[0.029-0.054] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs4307732-G	NR	9E-15		0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs4307732-G	0.901	2E-12	(EA)	0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs4307732-G	NR	1E-19		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs4307732-G	0.901	2E-16	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs4307732-G	0.901	7E-6	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	11q24.2	ST3GAL4	rs4307732-A	0.11	3E-12		0.067	[0.047-0.087] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1548	chr11	126244954	126244955	rs4307732	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	11q24.2	ST3GAL4	rs4307732-A	0.11	3E-9		0.056	[0.038-0.074] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1548	chr11	126246075	126246076	rs7940893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q24.2	NR	rs7940893-C	NR	4E-9		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220463-A	NR	1E-16		0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220463-A	0.881	2E-15	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220463-A	NR	4E-22		0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	11q24.2	NR	rs11220463-A	0.881	5E-20	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	11q24.2	ST3GAL4	rs11220463-A	NR	7E-13				NR [2501549] (imputed)	N
1548	chr11	126248210	126248211	rs11220463	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	11q24.2	ST3GAL4	rs11220463-A	NR	6E-17				NR [2501749] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	11q24.2		rs76970536-G	0.92822	3E-12		0.0562778	[0.041-0.072] unit decrease	NR [11722792] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs76970536-A	0.0911408	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	7E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	3E-22				Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	6E-23				Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	4E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q24.2	ST3GAL4	rs76970536-A	NR	5E-16		2.026	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	11q24.2	ST3GAL4	rs76970536-A	NR	2E-16	(EA)	2.848	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q24.2	ST3GAL4	rs76970536-A	NR	5E-10	(EA)	2.791	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	11q24.2	ST3GAL4	rs76970536-A	NR	2E-9		1.663	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	2E-7				Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	11q24.2	ST3GAL4	rs76970536-A	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1548	chr11	126250679	126250680	rs76970536	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	11q24.2	NR	rs76970536-A	0.0777	1E-19				Affymetrix, Illumina [at least 2500000] (imputed)	N
1548	chr11	126254265	126254266	rs35099186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q24.2	ST3GAL4	rs35099186-C	0.237476	7E-9		0.015252543	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr11	126254265	126254266	rs35099186	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	11q24.2	ST3GAL4	rs35099186-T	0.782	1E-6		0.038	[0.022-0.054] unit increase	Affymetrix [7947838] (imputed)	N
1548	chr11	126257659	126257664	rs150217538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q24.2	ST3GAL4	rs150217538-T	0.092464	6E-12		0.027402263	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1548	chr11	126257778	126257779	rs11220465	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q24.2	ST3GAL4	rs11220465-?	NR	6E-10		0.025077697	[0.017-0.033] unit decrease	Illumina [27896057] (imputed)	N
1548	chr11	126266664	126266665	rs11220471	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble E-selectin levels	5,284 Finnish ancestry individuals	NA	11q24.2	ST3GAL4	rs11220471-G	0.212	8E-12		0.162	unit decrease	Illumina [NR] (imputed)	N
1548	chr11	126270840	126270841	rs66619583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.2		rs66619583-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1548	chr11	126271607	126271608	rs142029184	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	11q24.2	NR	rs142029184-?	NR	9E-7		0.2638	[0.16-0.37] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1548	chr11	126275401	126275402	rs11220477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	11q24.2	NR	rs11220477-T	NR	2E-9		0.0348	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126275763	126275764	rs7933887	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	11q24.2	ST3GAL4	rs7933887-A	0.2384	4E-7		0.0344	[0.021-0.048] unit decrease	NR [8041861] (imputed)	N
1548	chr11	126275959	126275960	rs10893506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	11q24.2		rs10893506-C	0.653216	1E-50		0.0609734	[0.053-0.069] unit increase	Illumina [13474352] (imputed)	N
1548	chr11	126275959	126275960	rs10893506	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	11q24.2	ST3GAL4	rs10893506-?	NR	6E-41		0.06211	[0.053-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1548	chr11	126277215	126277216	rs2230278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q24.2	NR	rs2230278-T	0.312219	2E-11		0.01348	[0.0095-0.0174] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1548	chr11	126277811	126277812	rs10790802	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	11q24.2	NR	rs10790802-?	NR	9E-6		0.0369	[0.021-0.053] unit decrease	Illumina [at least 560000] (imputed)	N
1548	chr11	126278202	126278203	rs2298475	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132C	5,360 Icelandic ancestry individuals	NA	11q24.2		rs2298475-C	0.08151	5E-12		0.225012	[0.16-0.29] unit decrease	Illumina [7506463] (imputed)	N
1548	chr11	126278202	126278203	rs2298475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs2298475-C	NR	6E-99		0.0957	[0.087-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126281896	126281897	rs4937126	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	11q24.2		rs4937126-A	0.3141	2E-8		0.1364544	[0.088-0.185] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1548	chr11	126281896	126281897	rs4937126	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	11q24.2		rs4937126-A	0.3135	6E-9		0.08915969	[0.058-0.12] mmHg decrease	Affymetrix, Illumina [247315] (imputed)	N
1548	chr11	126281896	126281897	rs4937126	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	11q24.2		rs4937126-A	0.3143	2E-9		5.98052	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1548	chr11	126281896	126281897	rs4937126	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	11q24.2	intergenic	rs4937126-G	0.69	5E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1548	chr11	126283784	126283785	rs2236653	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	11q24.2	ST3GAL4	rs2236653-T	0.42	2E-9		1.5	[0.60-2.50] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1548	chr11	126284935	126284936	rs11220483	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs11220483-T	NR	3E-27		0.0469	[0.038-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q24.2		rs7949566-A	NR	2E-223		0.0649	[0.061-0.069] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q24.2	ST3GAL4	rs7949566-G	0.577333	2E-236		0.00756561	[0.0071-0.008] unit decrease	Affymetrix [13995440] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q24.2	ST3GAL4, KIRREL3	rs7949566-A	0.42	5E-182		28.8	z-score increase	Affymetrix [4311822] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	11q24.2	ST3GAL4	rs7949566-A	0.421428	5E-21		0.021460464	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q24.2	ST3GAL4	rs7949566-A	0.421471	3E-45		0.032572586	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs7949566-G	0.574017	1E-78				Affymetrix, Illumina [17210439] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q24.2	NR	rs7949566-G	0.578167	2E-76		0.035903	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	11q24.2	NR	rs7949566-?	NR	6E-10	(CD30-L)	0.505595	[0.35-0.67] unit increase	Illumina [11901634] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	11q24.2	ST3GAL4	rs7949566-A	0.4223	4E-13		0.02633343	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1548	chr11	126285300	126285301	rs7949566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	11q24.2	ST3GAL4	rs7949566-A	0.4222	3E-30		0.04181539	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1548	chr11	126286587	126286588	rs10893507	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	11q24.2	ST3GAL4, KIRREL3	rs10893507-?		5E-62		0.07	[0.062-0.078] unit decrease	Illumina [31500000] (imputed)	N
1548	chr11	126286587	126286588	rs10893507	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	11q24.2	ST3GAL4	rs10893507-A	0.481	9E-18		0.04	[0.03-0.04] unit increase	Illumina [NR] (imputed)	N
1548	chr11	126287753	126287754	rs4502008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.2	NR	rs4502008-T	0.594141	5E-37				Affymetrix, Illumina [24588908] (imputed)	N
1548	chr11	126288307	126288308	rs35600242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	11q24.2		rs35600242-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1548	chr11	126288307	126288308	rs35600242	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	11q24.2	NR	rs35600242-T	0.20138	5E-16		0.0313866	[0.024-0.039] unit increase	NR [19129689] (imputed)	N
1548	chr11	126288872	126288872	rs33972805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q24.2	NR	rs33972805-I	0.52609	3E-38		0.026386	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1548	chr11	126288955	126288956	rs4935967	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q24.2		rs4935967-A	0.478	1E-28				Affymetrix [10369434] (imputed)	N
1548	chr11	126290509	126290510	rs4937127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.2	ST3GAL4	rs4937127-G	0.521592	4E-33		0.027024947	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1548	chr11	126290509	126290510	rs4937127	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q24.2	ST3GAL4	rs4937127-G	0.5219	2E-18		0.03196514	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1548	chr11	126291020	126291021	rs11220486	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs11220486-A	0.2	3E-28		0.1096	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126291020	126291021	rs11220486	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		11q24.2	NR	rs11220486-A	NR	1E-8		0.0437404	NR unit increase	NR [NR] (imputed)	N
1548	chr11	126291474	126291475	rs2155311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q24.2		rs2155311-A	NR	1E-30		0.0273	[0.023-0.032] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1548	chr11	126291578	126291579	rs11220487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs11220487-A	NR	5E-14		0.0474	[0.035-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126292595	126292596	rs4937128	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	11q24.2	NR	rs4937128-?		6E-8	(HGF)	0.2808	[NR] unit decrease	Illumina [NR]	N
1548	chr11	126293187	126293188	rs948054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.2	ST3GAL4	rs948054-T	0.317728	4E-15		0.019210944	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1548	chr11	126293562	126293563	rs77284021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs77284021-T	NR	8E-28		0.0554	[0.045-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126295134	126295135	rs6590205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs6590205-A	NR	2E-27		0.026	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1548	chr11	126296588	126296589	rs4935969	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	11q24.2	NR	rs4935969-?	NR	4E-7	(hair color)			Illumina [535076]	N
1548	chr11	126296815	126296816	rs35257264	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELE	5,366 Icelandic ancestry individuals	NA	11q24.2		rs35257264-T	0.03014	2E-13		0.397914	[0.29-0.5] unit increase	Illumina [7506463] (imputed)	N
1548	chr11	126296824	126296825	rs35458154	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs35458154-A	0.023	2E-27		0.3266	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126296824	126296825	rs35458154	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	11q24.2	ST3GAL4	rs35458154-A	0.03	6E-12	(EA)	0.0588	[0.042-0.076] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1548	chr11	126296824	126296825	rs35458154	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	11q24.2	ST3GAL4	rs35458154-A	0.03	3E-12		0.06	[0.043-0.077] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1548	chr11	126296824	126296825	rs35458154	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	11q24.2	ST3GAL4	rs35458154-A	0.03	3E-8		0.048	NR unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1548	chr11	126297608	126297609	rs11220490	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs11220490-T	0.14	2E-14		0.1011	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126300536	126300537	rs11600151	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet endothelial cell adhesion molecule levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs11600151-T	0.1	1E-26		0.1473	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126301755	126301756	rs35166255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RL1	5,361 Icelandic ancestry individuals	NA	11q24.2		rs35166255-A	0.03342	3E-14		0.369269	[0.27-0.46] unit increase	Illumina [7506463] (imputed)	N
1548	chr11	126301755	126301756	rs35166255	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	11q24.2	intergenic	rs35166255-G	0.96	2E-13		0.46	unit decrease	Illumina [5270624] (imputed)	N
1548	chr11	126305494	126305495	rs11603123	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	11q24.2		rs11603123-A	0.032	3E-47		0.3712	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr11	126310081	126310082	rs878830	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	11q24.2	NR	rs878830-?		5E-6	(genus_Fusobacterium)	0.6949532	[0.42-0.97] unit decrease	Affymetrix [211319]	N
1548	chr11	126310118	126310119	rs3740917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q24.2	NR	rs3740917-G	NR	8E-14		0.0427	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1548	chr11	126316024	126316025	rs6590207	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	11q24.2	KIRREL3	rs6590207-A	0.709335	9E-12		0.0148093	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1548	chr11	126320381	126320385	rs201064931	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11q24.2	KIRREL3	rs201064931-T	0.0046	9E-6		1.0826	[0.6-1.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1548	chr11	126337290	126337291	rs10893512	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KIRREL3	rs10893512-?	NR	3E-9	(female)	2.53969	[NR] unit increase	Affymetrix [NR] (imputed)	N
1549	chr11	126354613	126354614	rs75904068	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	11q24.2	KIRREL3	rs75904068-T	0.9898	1E-6		1.1257	[0.67-1.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1549	chr11	126372549	126372550	rs10790809	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q24.2	KIRREL3	rs10790809-A	0.44025	7E-12		0.00966875	[0.0069-0.0124] unit decrease	Affymetrix [12370749]	N
1549	chr11	126372549	126372550	rs10790809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q24.2		rs10790809-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1549	chr11	126481439	126481440	rs571911	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	11q24.2	KIRREL3	rs571911-C	0.42076666666666673	2E-6		1.76	[1.03-2.49] unit decrease	Affymetrix [NR] (imputed)	N
1550	chr11	126522028	126522029	rs1318969	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q24.2	KIRREL3	rs1318969-G	0.300491157064862	4E-6	(F_Enterococcaceae_HB)	0.331184	[0.19-0.47] unit increase	Illumina [7711310] (imputed)	N
1550	chr11	126549295	126549296	rs7113610	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q24.2	ST3GAL4	rs7113610-?	NR	5E-8	(thyroxine)	0.22140625	[0.14-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1550	chr11	126587381	126587382	rs3909727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	11q24.2	KIRREL3	rs3909727-?	NR	2E-8		0.0185228	[0.012-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
1550	chr11	126587381	126587382	rs3909727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	11q24.2	KIRREL3	rs3909727-?	NR	2E-11		0.0220361	[0.016-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
1550	chr11	126590828	126590829	rs10736553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	11q24.2	NR	rs10736553-G	NR	2E-10		0.0249	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1550	chr11	126597138	126597139	rs4099578	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	11q24.2		rs4099578-T	NR	5E-6		0.16748273	[0.096-0.239] decrease	Illumina [6334277] (imputed)	N
1550	chr11	126601539	126601540	rs10893557	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	11q24.2	KIRREL3	rs10893557-?	NR	8E-9		7.65269E-4	[-0.00427-0.0058] unit decrease	Affymetrix [25921788] (imputed)	N
1550	chr11	126601539	126601540	rs10893557	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	11q24.2	KIRREL3	rs10893557-?	NR	8E-9		0.0147538	[0.0097-0.0198] unit decrease	Affymetrix [25921788] (imputed)	N
1550	chr11	126602385	126602386	rs4935987	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	11q24.2	KIRREL3	rs4935987-T	0.578	3E-9		0.0071	[0.0047-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1550	chr11	126607579	126607580	rs7114000	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	11q24.2	KIRREL3	rs7114000-A	0.06837	2E-6		0.1503	[0.088-0.212] year increase	Illumina [2310762] (imputed)	N
1551	chr11	126619189	126619190	rs1557488	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	11q24.2	KIRREL3	rs1557488-T	0.18	5E-6				Perlegen [378332]	N
1551	chr11	126663032	126663033	rs73022569	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	11q24.2	NR	rs73022569-?		9E-6		0.045	[0.024-0.066] unit increase	Illumina [7533529] (imputed)	N
1551	chr11	126709399	126709400	rs12794371	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q24.2	NR	rs12794371-T	0.331576093952372	4E-10		0.0060891807	[0.0042-0.008] unit increase	NR [NR]	N
1551	chr11	126709399	126709400	rs12794371	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	11q24.2	NR	rs12794371-T	0.331576093952372	1E-9		0.007413271	[0.005-0.0098] unit increase	NR [NR]	N
1551	chr11	126709399	126709400	rs12794371	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	11q24.2	NR	rs12794371-T	0.331576093952372	9E-10		0.0096844435	[0.0066-0.0128] unit increase	NR [NR]	N
1551	chr11	126709399	126709400	rs12794371	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	11q24.2	NR	rs12794371-T	0.331576093952372	3E-9		0.007853297	[0.0053-0.0104] unit increase	NR [NR]	N
1551	chr11	126709399	126709400	rs12794371	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	11q24.2	NR	rs12794371-T	0.331576093952372	2E-9		0.006115536	[0.0041-0.0081] unit increase	NR [NR]	N
1551	chr11	126709399	126709400	rs12794371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q24.2		rs12794371-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1551	chr11	126734318	126734319	rs7943634	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	11q24.2	KIRREL3	rs7943634-C	0.6925	9E-10		1.0237783		Affymetrix [11880941] (imputed)	N
1551	chr11	126734318	126734319	rs7943634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	11q24.2		rs7943634-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1552	chr11	126784260	126784261	rs117246501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.2		rs117246501-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1552	chr11	126809704	126809705	rs1939992	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	11q24.2	KIRREL3	rs1939992-?	0.26	1E-6	(Total IGF-1)			Illumina [496032]	N
1552	chr11	126859156	126859157	rs620875	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	11q24.2	KIRREL3	rs620875-?	0.101	3E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
1552	chr11	126859795	126859796	rs76331386	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	11q24.2	KIRREL3	rs76331386-G	0.9178	2E-7		0.082	[0.112-0.051] unit decrease	Illumina [11434023] (imputed)	N
1552	chr11	126875961	126875961	rs139159369	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	11q24.2	KIRREL3-AS3	rs139159369-A	0.8242	8E-6		0.0684	[0.038-0.098] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1553	chr11	126896522	126896523	rs642387	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Desulfovibrionia abundance in stool	5,959 Finnish ancestry individuals	NA	11q24.2		rs642387-G	0.374136	1E-8		0.0690588	[0.045-0.093] unit decrease	Illumina [7980478] (imputed)	N
1553	chr11	126896522	126896523	rs642387	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Desulfovibrionales abundance in stool	5,959 Finnish ancestry individuals	NA	11q24.2		rs642387-G	0.374136	2E-8		0.0744719	[0.049-0.1] unit decrease	Illumina [7980478] (imputed)	N
1553	chr11	126896522	126896523	rs642387	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Desulfovibrionaceae abundance in stool	5,959 Finnish ancestry individuals	NA	11q24.2		rs642387-G	0.374136	1E-8		0.0826504	[0.054-0.111] unit decrease	Illumina [7980478] (imputed)	N
1553	chr11	126896522	126896523	rs642387	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Desulfobacterota A abundance in stool	5,959 Finnish ancestry individuals	NA	11q24.2		rs642387-G	0.374136	1E-8		0.0561418	[0.037-0.075] unit decrease	Illumina [7980478] (imputed)	N
1553	chr11	126896976	126896977	rs503397	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11q24.2	KIRREL3-AS3	rs503397-T	0.2822	3E-8		0.0064	[0.0042-0.0086] unit increase	Affymetrix [~ 7740000] (imputed)	N
1553	chr11	126900992	126900993	rs11220727	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.2	NR	rs11220727-?	NR	1E-37				Affymetrix [NR]	N
1553	chr11	126933644	126933645	rs663237	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q24.2	NR	rs663237-T	0.3	9E-10		0.00722037	[0.0049-0.0095] unit increase	NR [9732723] (imputed)	N
1553	chr11	126965994	126965995	rs11220764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q24.2	Intergenic	rs11220764-T	0.1724	1E-9	(MTAG)	0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1553	chr11	126978141	126978142	rs11220776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q24.2	Intergenic	rs11220776-T	0.1749	1E-8	(MTAG)	0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1553	chr11	126979781	126979782	rs12788968	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q24.2	RP11-168K9.2	rs12788968-G	NR	3E-8		0.0095777	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
1553	chr11	126980864	126980865	rs11605020	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	11q24.2	ENSG00000272981	rs11605020-G	NR	1E-8		0.0099597	[0.0065-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
1553	chr11	126980864	126980865	rs11605020	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	11q24.2	NR	rs11605020-A	0.509984681042099	8E-9		0.005300546	[0.0035-0.0071] unit increase	NR [NR]	N
1553	chr11	126980864	126980865	rs11605020	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q24.2	NR	rs11605020-A	NR	5E-9		5.859	z score increase	Affymetrix [10847151] (imputed)	N
1553	chr11	126980864	126980865	rs11605020	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	11q24.2	NR	rs11605020-G	NR	4E-9		0.01387	[0.0093-0.0185] unit decrease	Affymetrix [10847151] (imputed)	N
1553	chr11	126980864	126980865	rs11605020	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	11q24.2	intergenic	rs11605020-A	0.5023	2E-10		6.347	z score increase	Illumina [18485882] (imputed)	N
1553	chr11	126987032	126987033	rs12800944	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q24.2		rs12800944-C	0.65	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1554	chr11	127022559	127022560	rs57344483	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	11q24.2	NR	rs57344483-G	0.0741	5E-9		1.0245901	[1.02-1.03]	NR [8098588] (imputed)	N
1554	chr11	127058782	127058783	rs7104858	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q24.2	NR	rs7104858-?		3E-6				Illumina [4322238] (imputed)	N
1554	chr11	127081590	127081591	rs4529888	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	11q24.2	intergenic	rs4529888-?	0.43	5E-6	(Joint)	1.1364	[1.06-1.22]	Illumina [254145]	N
1554	chr11	127110182	127110183	rs2514895	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q24.2	NR	rs2514895-C	0.812138921875	2E-6	(IGP36)	0.1858	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1554	chr11	127117795	127117796	rs111260777	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	11q24.2		rs111260777-C	NR	1E-9		4.3623	[3-5.72] unit increase	Illumina [NR] (imputed)	N
1555	chr11	127217847	127217848	rs75702521	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	11q24.2	LOC101929497, ETS1)	rs75702521-?	NR	3E-7		3.05018	[1.88-4.22] unit decrease	Affymetrix [up to 386296] (imputed)	N
1555	chr11	127268601	127268602	rs190169131	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q24.2	Intergenic	rs190169131-G	0.998	1E-6	(AA)	0.315	unit increase	Illumina [NR] (imputed)	N
1556	chr11	127293159	127293160	rs1600222	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	11q24.2	KIRREL3	rs1600222-T	0.3153	2E-6		0.1647	[0.097-0.232] unit increase	Illumina [up to 38043574] (imputed)	N
1556	chr11	127296874	127296875	rs7114004	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	11q24.2	LOC101929497	rs7114004-A	0.0647	5E-8	(AA)	0.1588	[0.1-0.22] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1556	chr11	127297453	127297454	rs7936591	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	11q24.2	BC030092	rs7936591-T	0.499	8E-6	(Commissions)	2.08	[1.18-2.98] unit decrease	Illumina [799713]	N
1556	chr11	127316807	127316808	rs11820519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.2	NR	rs11820519-T	0.03136	1E-8	(ECI2)	4.926	NR unit increase	Illumina [1671387] (imputed)	N
1556	chr11	127328187	127328188	rs16831	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	11q24.2	intergenic	rs16831-T	0.24	6E-7		5.03	NR Z score decrease	Affymetrix, Illumina [2725778] (imputed)	N
1556	chr11	127341323	127341324	rs7121194	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	11q24.2	intergenic	rs7121194-T	0.23	9E-6	(female)	0.247	[0.14-0.35] unit decrease	Illumina [6380737] (imputed)	N
1556	chr11	127343880	127343881	rs187327935	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q24.2	Intergenic	rs187327935-T	0.998	4E-8	(AA)	0.306	unit increase	Illumina [NR] (imputed)	N
1556	chr11	127347810	127347811	rs191110399	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	11q24.2	Intergenic	rs191110399-G	0.998	5E-8	(AA)	0.3	unit increase	Illumina [NR] (imputed)	N
1556	chr11	127352145	127352146	rs142287818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.2	NR	rs142287818-G	0.01045	4E-9	(HIST1H1C)	0.03417	NR unit increase	Illumina [1671387] (imputed)	N
1557	chr11	127416531	127416532	rs147237795	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11q24.2		rs147237795-G	NR	2E-6	(GLM)	4.1116	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1557	chr11	127436925	127436926	rs356265	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	11q24.2	KIRREL3-AS3	rs356265-T	0.311505	1E-9		0.0251405	[0.017-0.033] unit increase	Affymetrix [641018] (imputed)	N
1557	chr11	127445358	127445359	rs356256	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	11q24.2	NR	rs356256-?		2E-6				Illumina [4322238] (imputed)	N
1557	chr11	127450058	127450059	rs187277511	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.2	NR	rs187277511-T	0.0122	7E-9	(S100A13)	0.01315	NR unit increase	Illumina [1671387] (imputed)	N
1557	chr11	127460570	127460571	rs11822667	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	11q24.2	intergenic	rs11822667-A	0.0546	4E-6		1.6601	[NR] unit increase	Illumina [1216074] (imputed)	N
1557	chr11	127463032	127463033	rs7937974	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q24.2		rs7937974-G	0.433	9E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1557	chr11	127478355	127478355	rs34880764	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11q24.2	LOC101929497	rs34880764-A	0.384689	2E-13		0.0154767	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
1557	chr11	127499663	127499664	rs356273	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	11q24.2	LOC101929497	rs356273-T	0.276	2E-6		0.124	[0.074-0.175] unit increase	Affymetrix [7519176] (imputed)	N
1558	chr11	127558437	127558438	rs7123770	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	11q24.2	ETS1	rs7123770-?	NR	3E-6		0.14	[NR] unit increase	Affymetrix [329806] (imputed)	N
1558	chr11	127558437	127558438	rs7123770	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	11q24.2	ETS1	rs7123770-?	NR	7E-6		0.15	[NR] unit increase	Affymetrix [329806]	N
1558	chr11	127597986	127597987	rs183570761	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	11q24.2	NR	rs183570761-T	0.017	4E-6		2.38	[1.72-3.17]	Illumina [64973696] (imputed)	N
1558	chr11	127645686	127645687	rs10790917	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	11q24.2	Intergenic	rs10790917-?		2E-6		1.2884938	[NR]	Affymetrix [492217] (imputed)	N
1559	chr11	127677873	127677874	rs985292	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	11q24.2	intergenic	rs985292-?	NR	1E-6	(AA)	2.4	[1.42-3.38] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1559	chr11	127686352	127686353	rs1019623	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	11q24.2	intergenic	rs1019623-T		1E-6		107.87	[64.08-151.66] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
1559	chr11	127693693	127693694	rs11221067	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.2	NR	rs11221067-?	NR	8E-6				Affymetrix [NR]	N
1559	chr11	127716139	127716140	rs2322978	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	11q24.2	LOC387820	rs2322978-?		8E-7				Illumina [859311]	N
1559	chr11	127746514	127746515	rs1808470	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	11q24.2	NR	rs1808470-?		3E-6		0.1	unit increase	Illumina [1211988] (imputed)	N
1559	chr11	127761665	127761666	rs7927044	22560479	Forno E	2012-05-02	J Allergy Clin Immunol	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 children	11q24.2	NR	rs7927044-A	0.0134	7E-9		0.16	[NR] unit decrease	Illumina [512296]	N
1560	chr11	127902699	127902700	rs7127228	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	11q24.3	Intergenic	rs7127228-A	0.29	3E-6	(Intercanthal width)	0.301	[NR] unit decrease	Affymetrix [311944]	N
1560	chr11	127914752	127914753	rs1317931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	11q24.3	intergenic	rs1317931-G	0.6744	3E-10		0.02376546	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1560	chr11	127921326	127921327	rs1425872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q24.3	NR	rs1425872-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1561	chr11	127932609	127932610	rs10893812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.3		rs10893812-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1561	chr11	127937765	127937766	rs10750385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q24.3		rs10750385-G	0.674121	5E-23		0.023510888	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1561	chr11	127937765	127937766	rs10750385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	11q24.3		rs10750385-G	0.673992	2E-16		0.019697456	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1561	chr11	127937765	127937766	rs10750385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	11q24.3	NR	rs10750385-G	0.677218	3E-28		0.021815	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1561	chr11	127937765	127937766	rs10750385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	11q24.3	NR	rs10750385-G	0.677224	1E-33		0.02349	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1561	chr11	127937765	127937766	rs10750385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	11q24.3		rs10750385-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1561	chr11	127938138	127938139	rs1816173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs1816173-G	0.712418	2E-25				Affymetrix, Illumina [24332387] (imputed)	N
1561	chr11	127938497	127938498	rs4542427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q24.3	NR	rs4542427-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1561	chr11	127939444	127939445	rs6590295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q24.3		rs6590295-A	0.672581	2E-23		0.0228071	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1561	chr11	127939444	127939445	rs6590295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	11q24.3		rs6590295-A	0.672599	8E-20		0.021491194	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1561	chr11	127939444	127939445	rs6590295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs6590295-A	0.705568	9E-23				Affymetrix, Illumina [20825802] (imputed)	N
1561	chr11	127939444	127939445	rs6590295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	11q24.3	NR	rs6590295-A	0.673836	2E-25		0.021462	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1561	chr11	127939661	127939662	rs1425869	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	11q24.3	intergenic	rs1425869-T	0.6732	7E-11		0.02460883	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1561	chr11	127941827	127941828	rs1940751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	11q24.3		rs1940751-A	NR	7E-17		0.0178	[0.014-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1561	chr11	127941827	127941828	rs1940751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	11q24.3		rs1940751-A	NR	2E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1561	chr11	127941827	127941828	rs1940751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	11q24.3		rs1940751-A	0.620972	1E-23		0.022876723	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1561	chr11	127941827	127941828	rs1940751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	11q24.3		rs1940751-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1561	chr11	127948561	127948562	rs6590297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs6590297-G	0.70841	2E-33				Affymetrix, Illumina [24246363] (imputed)	N
1561	chr11	127951061	127951062	rs11560874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	11q24.3		rs11560874-G	0.379181	2E-15		0.0171558	[0.013-0.021] unit decrease	Illumina [13479295] (imputed)	N
1561	chr11	127951061	127951062	rs11560874	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q24.3	LOC101929497, ETS1	rs11560874-?	NR	2E-17		0.025979253	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
1561	chr11	127951979	127951980	rs10893817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	11q24.3		rs10893817-G	NR	2E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1561	chr11	127951979	127951980	rs10893817	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	11q24.3		rs10893817-A	0.351	5E-13		0.08	[-0.11--0.06] % decrease	Affymetrix [NR] (imputed)	N
1561	chr11	127995903	127995904	rs73025192	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		11q24.3	KIRREL3-AS3, ETS1	rs73025192-T	0.12	2E-8		24.18	[15.79-32.57] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1561	chr11	127995903	127995904	rs73025192	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		11q24.3	KIRREL3-AS3, ETS1	rs73025192-T	0.08	4E-6	(EA)	26.71	[15.3-38.12] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1561	chr11	127995903	127995904	rs73025192	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		11q24.3		rs73025192-?	NR	2E-6		17.7	[10.39-25.01] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1561	chr11	128017174	128017175	rs11221170	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	11q24.3	NR	rs11221170-T	0.37739	5E-7		0.0836906	[0.051-0.116] unit increase	Illumina [9469131] (imputed)	N
1561	chr11	128025696	128025697	rs10893823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.3		rs10893823-A	0.13553	4E-12		0.02329852	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1561	chr11	128034793	128034794	rs61909476	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	11q24.3	ETS1	rs61909476-A	0.0689	4E-8		0.0812	[0.053-0.11] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
1561	chr11	128042574	128042575	rs10893829	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q24.3	ETS1	rs10893829-T	0.8533	1E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1562	chr11	128060144	128060145	rs201900072	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	11q24.3	NR	rs201900072-G	0.142	3E-6		0.201	[0.12-0.29] unit decrease	Illumina [10677593] (imputed)	N
1562	chr11	128063658	128063659	rs1215886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q24.3		rs1215886-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1562	chr11	128092491	128092492	rs71479994	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	11q24.3	NR	rs71479994-?	NR	9E-6	(Native Hawaiian)	0.8798	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1562	chr11	128105509	128105510	rs513365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q24.3	RP11-702B10.1	rs513365-G	0.286879	2E-16		0.020126546	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr11	128105509	128105510	rs513365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q24.3	RP11-702B10.1	rs513365-G	0.286843	4E-14		0.018478677	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr11	128118664	128118665	rs4936043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.3		rs4936043-C	0.418134	6E-13		0.01656766	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr11	128118664	128118665	rs4936043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.3		rs4936043-C	0.418123	2E-10		0.014829126	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr11	128129186	128129187	rs11221227	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q24.3	NR	rs11221227-?	NR	3E-40				Affymetrix [NR]	N
1562	chr11	128131265	128131266	rs1940377	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	11q24.3	ETS1	rs1940377-G	0.787083	9E-12		1.0513296	[1.03630865380046-1.06656823804872]	NR [9572556] (imputed)	N
1562	chr11	128131265	128131266	rs1940377	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	11q24.3	NR	rs1940377-G	0.7895	8E-13		1.0494281	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
1562	chr11	128138867	128138868	rs34814731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	11q24.3		rs34814731-T	NR	5E-9		0.0658	[0.044-0.088] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1562	chr11	128142799	128142800	rs478002	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q24.3	NR	rs478002-?	NR	3E-9		0.03223	[0.022-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1562	chr11	128142799	128142800	rs478002	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q24.3	NR	rs478002-?	NR	7E-9		0.0316	[0.021-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1562	chr11	128147448	128147449	rs55974252	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q24.3	ETS1	rs55974252-C	NR	3E-6	(EA)	1.12	[1.07-1.18]	Illumina [up to 4778154] (imputed)	N
1562	chr11	128153806	128153807	rs61907683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	11q24.3		rs61907683-C	NR	5E-12		0.0582	[0.042-0.075] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1562	chr11	128156313	128156314	rs12795702	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q24.3		rs12795702-A	NR	4E-9		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
1562	chr11	128157864	128157865	rs61907710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	11q24.3		rs61907710-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1562	chr11	128158188	128158189	rs56129466	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	11q24.3	KIRREL3-AS3, ETS1	rs56129466-A	0.79	2E-13		1.047	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1562	chr11	128161141	128161142	rs61907712	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	11q24.3	KIRREL3, AS3, ETS1	rs61907712-C	0.813	2E-10		0.034	[0.024-0.044] unit decrease	NR [NR] (imputed)	N
1562	chr11	128161141	128161142	rs61907712	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	11q24.3	KIRREL3-AS3, ETS1	rs61907712-C	0.813	2E-10		0.034	[0.024-0.044] unit decrease	NR [7647814] (imputed)	N
1562	chr11	128163106	128163107	rs61907713	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	11q24.3	NR	rs61907713-G	0.7809	4E-13		1.0538518	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1562	chr11	128163162	128163162	rs533495047	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	11q24.3	NR	rs533495047-a	0.8091	4E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [16201029] (imputed)	N
1562	chr11	128168630	128168631	rs55836957	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	11q24.3	ETS1	rs55836957-C	0.78	2E-12				NR [> 9500000] (imputed)	N
1562	chr11	128168630	128168631	rs55836957	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	11q24.3	ETS1	rs55836957-?	0.6605	5E-9		1.1322464	[1.09-1.18]	Affymetrix [15688218] (imputed)	N
1562	chr11	128172469	128172470	rs61907718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	11q24.3		rs61907718-A	NR	2E-10		0.067	[0.046-0.088] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1562	chr11	128172469	128172470	rs61907718	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	11q24.3	ETS1	rs61907718-A	0.216956	5E-10		0.06928254	[0.047-0.091] unit increase	Affymetrix [7288503] (imputed)	N
1562	chr11	128172836	128172836	rs140522418	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	11q24.3	KIRREL3-AS3, ETS1	rs140522418-?	NR	4E-10		1.062	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1562	chr11	128172836	128172836	rs140522418	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	11q24.3	KIRREL3-AS3, ETS1	rs140522418-G	NR	3E-8		1.051	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
1562	chr11	128174780	128174781	rs73018933	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	11q24.3		rs73018933-?	NR	6E-9		0.93	[0.91-0.95]	Illumina [5170515] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	11q24.3		rs10893844-C	NR	6E-21		0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.3		rs10893844-C	0.502377	2E-22		0.021947742	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.3		rs10893844-C	0.502395	5E-25		0.022921262	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs10893844-C	0.452834	1E-34				Affymetrix, Illumina [19872809] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	11q24.3	NR	rs10893844-C	0.501551	3E-35		0.02457	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q24.3		rs10893844-?	NR	5E-29				NR [~ 8900000] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	11q24.3	intergenic	rs10893844-C	0.504	2E-11		0.02332743	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q24.3	intergenic	rs10893844-C	0.5039	4E-17		0.02997709	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q24.3	intergenic	rs10893844-C	0.5039	4E-15		0.02794785	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	11q24.3	intergenic	rs10893844-C	0.5039	1E-10		0.02241265	[0.016-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128185849	128185850	rs10893844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	11q24.3	intergenic	rs10893844-C	0.5039	6E-10		0.02168215	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128186673	128186674	rs118174290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.3		rs118174290-A	0.021116	2E-9		0.047515452	[0.032-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr11	128186881	128186882	rs10893845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	11q24.3		rs10893845-G	0.50161	4E-11		0.014673897	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr11	128186881	128186882	rs10893845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q24.3		rs10893845-G	0.501626	9E-11		0.014413131	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr11	128186881	128186882	rs10893845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	11q24.3	intergenic	rs10893845-G	0.503	1E-10		0.02307021	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128186881	128186882	rs10893845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	11q24.3	intergenic	rs10893845-G	0.503	1E-16		0.02951845	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1562	chr11	128186881	128186882	rs10893845	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	11q24.3	ETS1	rs10893845-T	0.5074	6E-7		0.059	[0.036-0.082] unit decrease	Illumina [2400000] (imputed)	N
1562	chr11	128187382	128187383	rs7127307	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	11q24.3		rs7127307-C	0.4888	1E-13		0.92		Affymetrix, Illumina [9397031] (imputed)	N
1562	chr11	128187382	128187383	rs7127307	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q24.3	ETS1	rs7127307-T	0.53	2E-18	(EA, fixed effects)	1.0638298		Illumina [15539996] (imputed)	N
1562	chr11	128187382	128187383	rs7127307	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	11q24.3	ETS1	rs7127307-C	0.47	1E-20	(random effects)		NR	Illumina [15539996] (imputed)	N
1563	chr11	128189100	128189101	rs4937314	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	11q24.3	intergenic	rs4937314-C	0.17	7E-6				Affymetrix [614963]	N
1563	chr11	128192379	128192380	rs12284236	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs12284236-G	0.01742	2E-8	(GRPEL1)	0.03885	NR unit increase	Illumina [1671387] (imputed)	N
1563	chr11	128194449	128194450	rs7933433	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q24.3	intergenic	rs7933433-?	NR	1E-10	(subset analysis)			Illumina [130052]	N
1563	chr11	128194449	128194450	rs7933433	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q24.3	ETS1	rs7933433-T	NR	7E-6		1.08	[1.04-1.11]	Illumina [up to 4778154] (imputed)	N
1563	chr11	128194449	128194450	rs7933433	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q24.3	ETS1	rs7933433-T	NR	3E-6	(EA)	1.11	[1.06-1.16]	Illumina [up to 4778154] (imputed)	N
1563	chr11	128196863	128196864	rs80090311	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs80090311-T	0.01394	2E-8	(GRPEL1)	0.0391	NR unit increase	Illumina [1671387] (imputed)	N
1563	chr11	128198602	128198603	rs12291789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.3		rs12291789-T	0.13801	5E-10		0.02029304	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr11	128206409	128206410	rs6590322	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	11q24.3	intergenic	rs6590322-?	NR	9E-6				Illumina [516645]	N
1563	chr11	128208912	128208913	rs150884492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs150884492-C	0.01045	1E-24	(RAB21)	0.03992	NR unit increase	Illumina [1671387] (imputed)	N
1563	chr11	128216691	128216692	rs4937323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	11q24.3	intergenic	rs4937323-T	0.5642	7E-11		0.02341302	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr11	128216691	128216692	rs4937323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	11q24.3	intergenic	rs4937323-T	0.5641	1E-10		0.02313755	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr11	128216691	128216692	rs4937323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	11q24.3	intergenic	rs4937323-T	0.5641	2E-10		0.02294164	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr11	128216838	128216839	rs4937324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.3		rs4937324-T	0.564333	7E-11		0.014642358	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr11	128234143	128234144	rs10750397	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	11q24.3	NR	rs10750397-G	0.7102	1E-20		0.048	[0.038-0.058] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1563	chr11	128234143	128234144	rs10750397	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	11q24.3	NR	rs10750397-G	0.7146	2E-21		0.04	[0.032-0.048] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1563	chr11	128234143	128234144	rs10750397	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q24.3	ETS1	rs10750397-A	0.2817	8E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1563	chr11	128236057	128236058	rs7931302	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11q24.3	ETS1	rs7931302-C	0.276869908846429	8E-9		0.0461	[0.03-0.062] unit increase	NR [5035015] (imputed)	N
1563	chr11	128258074	128258075	rs11221273	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	11q24.3	NR	rs11221273-?	NR	7E-6		0.1201	[0.068-0.172] unit increase	Illumina [at least 560000] (imputed)	N
1563	chr11	128269097	128269098	rs76299412	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	11q24.3	NR	rs76299412-A	0.15261400000000003	2E-20		0.0349073	[0.027-0.043] unit increase	Affymetrix [16580851] (imputed)	N
1563	chr11	128271722	128271722	rs34697127	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	11q24.3	NR	rs34697127-CA	0.16422899999999996	2E-12		0.0122806	[0.0088-0.0157] unit increase	Affymetrix [16578495] (imputed)	N
1563	chr11	128283444	128283445	rs1946007	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11q24.3	ETS1	rs1946007-?	NR	7E-6	(AA)	1.2820514	[1.15-1.43]	Illumina [at least 5000000] (imputed)	N
1563	chr11	128307445	128307445	rs11430718	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q24.3		rs11430718-G	NR	1E-6		0.192439	[0.11-0.27] unit decrease	NR [5275424] (imputed)	N
1563	chr11	128307813	128307814	rs12794572	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	11q24.3		rs12794572-T	0.611	9E-18				Affymetrix [10369434] (imputed)	N
1563	chr11	128310345	128310346	rs34516251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	11q24.3		rs34516251-A	NR	1E-8		0.0676	[0.044-0.091] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1563	chr11	128310345	128310346	rs34516251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.3		rs34516251-A	0.235087	3E-12		0.022419225	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr11	128310799	128310800	rs117858172	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	11q24.3		rs117858172-G	NR	2E-6	(GLM)	3.8171	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1563	chr11	128311058	128311059	rs6590330	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	11q24.3	NR	rs6590330-A	NR	3E-8				Illumina [NR] (imputed)	N
1563	chr11	128311058	128311059	rs6590330	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	11q24.3	ETS1	rs6590330-A	0.35	3E-8		1.51		Illumina [2100739] (imputed)	N
1563	chr11	128311058	128311059	rs6590330	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	11q24.3	ETS1	rs6590330-A	0.34	2E-25		1.37	[1.29-1.45]	Illumina [493955]	N
1563	chr11	128312397	128312397	rs11454405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	11q24.3		rs11454405-AT	0.389496	2E-9		0.013885899	[0.0093-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr11	128314423	128314424	rs11501246	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q24.3	NR	rs11501246-A	0.623	2E-58		0.791	[0.76-0.82]	Illumina [11270530] (imputed)	N
1563	chr11	128318312	128318314	rs34127175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q24.3		rs34127175-C	0.395771	6E-20		0.02115197	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr11	128319477	128319478	rs12574073	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	11q24.3	ETS1	rs12574073-?	NR	3E-14		1.24	[1.17-1.32]	Illumina [at least 5000000] (imputed)	N
1564	chr11	128324868	128324869	rs12575600	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	11q24.3	ETS1	rs12575600-?	NR	6E-10		1.24	[1.16-1.33]	Illumina [at least 5000000] (imputed)	N
1564	chr11	128325552	128325553	rs10893872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	11q24.3		rs10893872-C	NR	7E-38		0.0246	[0.021-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1564	chr11	128325552	128325553	rs10893872	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q24.3		rs10893872-T	0.485	9E-27				Affymetrix [10369434] (imputed)	N
1564	chr11	128325552	128325553	rs10893872	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	11q24.3		rs10893872-T	NR	1E-8		0.110347	[0.073-0.148] unit increase	NR [2787054] (imputed)	N
1564	chr11	128325552	128325553	rs10893872	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	11q24.3		rs10893872-T	NR	9E-6		0.0960914	[0.054-0.139] unit increase	NR [5054572] (imputed)	N
1564	chr11	128326462	128326463	rs4369416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q24.3		rs4369416-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1564	chr11	128326602	128326604	rs61502648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.3	ETS1	rs61502648-C	0.298371	7E-14		0.018536096	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr11	128328912	128328913	rs8705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	11q24.3		rs8705-A	NR	4E-26		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1564	chr11	128328912	128328913	rs8705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q24.3		rs8705-A	NR	9E-14		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1564	chr11	128328912	128328913	rs8705	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	11q24.3		rs8705-G	0.683	7E-16				Affymetrix [10369434] (imputed)	N
1564	chr11	128328912	128328913	rs8705	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	11q24.3	NR	rs8705-A	NR	7E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	11q24.3	ETS1	rs8705-A	0.317583	2E-31		0.027985653	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q24.3	ETS1	rs8705-A	0.317619	1E-15		0.019288767	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.3	ETS1	rs8705-A	0.317621	3E-25		0.025168741	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs8705-A	0.289159	2E-41				Affymetrix, Illumina [24649327] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	11q24.3	NR	rs8705-A	0.316569	1E-39		0.026397	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs8705-A	0.296649	7E-17				Affymetrix, Illumina [23114412] (imputed)	N
1564	chr11	128328912	128328913	rs8705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	11q24.3	NR	rs8705-A	0.31676	2E-18		0.018333	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1564	chr11	128328912	128328913	rs8705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q24.3		rs8705-?	NR	3E-36				NR [~ 8900000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.319	1E-15		0.03147405	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.3192	2E-9		0.02347366	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.3191	1E-9		0.0239447	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.3191	3E-9		0.0233377	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.3193	2E-11		0.02655363	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328912	128328913	rs8705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	11q24.3	ETS1	rs8705-A	0.3192	9E-10		0.02411273	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128328958	128328959	rs1128334	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	11q24.3	ETS1	rs1128334-?	NR	7E-12		1.39	1.26-1.52	Illumina [NR]	N
1564	chr11	128328958	128328959	rs1128334	20169177	Yang W	2010-02-12	PLoS Genet	Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	314 Chinese ancestry cases, 1,484 Chinese ancestry controls	2,630 Chinese ancestry cases, 2,155 Chinese ancestry controls, 314 Thai ancestry cases, 519 Thai ancestry controls	11q24.3	ETS1	rs1128334-A	0.35	2E-11		1.29	[1.20-1.39]	Illumina [514221]	N
1564	chr11	128330519	128330520	rs4937333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.3	ETS1	rs4937333-C	0.527573	5E-14		0.02026799	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128330519	128330520	rs4937333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.3	ETS1	rs4937333-C	0.527553	9E-43		0.03130943	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128330519	128330520	rs4937333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs4937333-C	0.5227	1E-59				Affymetrix, Illumina [24588908] (imputed)	N
1564	chr11	128330519	128330520	rs4937333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	11q24.3	NR	rs4937333-C	0.527548	1E-59		0.030232	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1564	chr11	128330519	128330520	rs4937333	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q24.3	ETS1	rs4937333-C	0.5265	6E-17		0.03133689	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128330519	128330520	rs4937333	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q24.3	ETS1	rs4937333-C	0.5264	6E-18		0.03224136	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128332514	128332515	rs116502295	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	11q24.3	ETS1	rs116502295-C	0.006	9E-7	(HMG CoA reductase inhibitors [C10AA])	6.52		Illumina [16500000] (imputed)	N
1564	chr11	128333016	128333018	rs34834119	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	11q24.3	ETS1	rs34834119-C	0.2626	6E-18		0.03571651	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128335577	128335578	rs4937334	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q24.3	ETS1	rs4937334-A	0.2277	6E-12		0.02992362	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128340976	128340977	rs34658647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	11q24.3		rs34658647-G	NR	8E-21		0.0246	[0.02-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1564	chr11	128342956	128342957	rs61909068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q24.3	NR	rs61909068-G	NR	4E-11		0.0228	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1564	chr11	128346792	128346793	rs11221322	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q24.3	ETS1	rs11221322-?	NR	1E-6	(subset analysis)			Illumina [130052]	N
1564	chr11	128349429	128349430	rs12575164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs12575164-C	0.197009	3E-32				Affymetrix, Illumina [23467995] (imputed)	N
1564	chr11	128349429	128349430	rs12575164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	11q24.3	NR	rs12575164-C	0.219625	3E-34		0.02762	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1564	chr11	128351141	128351142	rs61909096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q24.3		rs61909096-T	NR	3E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1564	chr11	128351141	128351142	rs61909096	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q24.3	ETS1	rs61909096-G	NR	5E-6		1.0527425	NR	Affymetrix, Illumina [8278136] (imputed)	N
1564	chr11	128351816	128351817	rs7130469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.3	ETS1	rs7130469-A	0.9081526	7E-9		0.022241646	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128353006	128353007	rs10893876	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	11q24.3	NR	rs10893876-C	0.766412	4E-8		0.00796529	[0.0051-0.0109] unit increase	Affymetrix [16585854] (imputed)	N
1564	chr11	128353006	128353007	rs10893876	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	11q24.3	NR	rs10893876-C	0.766412	4E-7		0.0087643	[0.0054-0.0121] unit increase	Affymetrix [16585866] (imputed)	N
1564	chr11	128356484	128356485	rs112108520	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs112108520-G	0.990479	2E-8		0.251652	[0.16-0.34] decrease	Affymetrix [11014269] (imputed)	N
1564	chr11	128363716	128363717	rs11604768	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q24.3		rs11604768-C	0.18	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
1564	chr11	128367761	128367762	rs3924289	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q24.3	NR	rs3924289-A	0.1845	4E-9				NR [9056863] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	11q24.3		rs7924522-C	0.34	8E-11				Affymetrix [10369434] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	11q24.3	ETS1	rs7924522-A	NR	1E-5		1.08069	[1.05-1.12]	Illumina [NR] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	11q24.3	ETS1	rs7924522-A	NR	1E-8		1.10429	[1.07-1.14]	Illumina [NR] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11q24.3	ETS1	rs7924522-A	NR	2E-14		0.0569	unit increase	Illumina [15409056] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	11q24.3	NR	rs7924522-A		2E-14		0.12	[0.081-0.159] unit increase	NR [NR]	N
1564	chr11	128380741	128380742	rs7924522	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	11q24.3	ETS1	rs7924522-C	0.34	3E-15				Affymetrix, Illumina [8002429] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	11q24.3	ETS1	rs7924522-A	0.66	7E-17		1.098901	NR	Affymetrix, Illumina [8002429] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	11q24.3	ETS1	rs7924522-A	0.66	3E-6		1.0869565	NR	Affymetrix [at least 8002429] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	11q24.3	ETS1	rs7924522-?	NR	4E-15		0.1057	[0.079-0.132] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	11q24.3	ETS1	rs7924522-A	NR	3E-8		1.0949404	[1.06030436107629-1.13070801673771]	Affymetrix [up to 40000000] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	11q24.3	ETS1	rs7924522-C	0.336	3E-16		0.11	[0.085-0.135] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1564	chr11	128380741	128380742	rs7924522	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q24.3	ETS1	rs7924522-C	0.3372	1E-15		0.116	[0.087-0.145] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	11q24.3		rs11221332-C	0.785	9E-16				Affymetrix [10369434] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q24.3	NR	rs11221332-T	NR	4E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q24.3	ETS1	rs11221332-C	0.787	5E-9		0.0963	[0.063-0.13] unit increase	Affymetrix [~ 11900000] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	11q24.3	ETS1	rs11221332-?		6E-6				Illumina [9578670] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	11q24.3	ETS1	rs11221332-?		2E-8				Illumina [9725440] (imputed)	N
1564	chr11	128380973	128380974	rs11221332	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	11q24.3	ETS1	rs11221332-?	NR	2E-10	(subset analysis)			Illumina [130052]	N
1564	chr11	128380973	128380974	rs11221332	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	11q24.3	ETS1	rs11221332-A	0.24	5E-16		1.21	[1.16-1.27]	Illumina [292387]	N
1564	chr11	128381866	128381867	rs7108992	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	11q24.3	NR	rs7108992-A		8E-9		1.06		NR [8016731] (imputed)	N
1564	chr11	128381866	128381867	rs7108992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.3		rs7108992-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1564	chr11	128385168	128385169	rs10790962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	11q24.3		rs10790962-A	NR	3E-19		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1564	chr11	128385168	128385169	rs10790962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	11q24.3	ETS1	rs10790962-A	0.469042	5E-17		0.019101016	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr11	128385168	128385169	rs10790962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q24.3	ETS1	rs10790962-A	0.469075	3E-19		0.02051017	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr11	128385168	128385169	rs10790962	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	11q24.3	ETS1	rs10790962-A	0.4695	1E-9		0.02224209	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr11	128389258	128389259	rs11820002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	11q24.3		rs11820002-C	NR	6E-9		0.0567	[0.038-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1564	chr11	128389390	128389391	rs11819995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q24.3		rs11819995-T	NR	1E-10		0.0493	[0.034-0.064] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1564	chr11	128389390	128389391	rs11819995	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	11q24.3	NR	rs11819995-C	0.7799	8E-9		0.0599	[0.04-0.08] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1564	chr11	128389390	128389391	rs11819995	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	11q24.3	ETS1	rs11819995-T	0.22	1E-8		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1564	chr11	128390424	128390425	rs12223343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q24.3	NR	rs12223343-C	NR	2E-9		0.0292	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1564	chr11	128390676	128390677	rs3935794	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Liver fibrosis in pediatric non-alcoholic fatty acid liver disease	208 Hispanic boys	NA	11q24.3	ETS1	rs3935794-G	0.0625	4E-6	(additive model)			Illumina [up to 624297]	N
1564	chr11	128391936	128391937	rs61907765	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	11q24.3	ETS1	rs61907765-T		2E-13		1.1712317		Illumina [252970]	N
1564	chr11	128391936	128391937	rs61907765	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	11q24.3	ETS1	rs61907765-T	0.213	3E-13		1.18		Illumina [139553]	N
1564	chr11	128398937	128398938	rs67232546	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q24.3	ETS1	rs67232546-T	0.207	1E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1564	chr11	128398937	128398938	rs67232546	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	11q24.3	ETS1	rs67232546-T	0.20922179282714	5E-10		0.0596	[0.041-0.078] unit increase	NR [5035015] (imputed)	N
1564	chr11	128403207	128403208	rs6590334	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q24.3	ETS1	rs6590334-T	NR	2E-9	(EA)	1.14	[1.09-1.18]	Illumina [up to 4778154] (imputed)	N
1564	chr11	128403207	128403208	rs6590334	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	11q24.3	ETS1	rs6590334-T	NR	1E-8		1.1	[1.07-1.14]	Illumina [up to 4778154] (imputed)	N
1564	chr11	128406437	128406438	rs3802826	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	11q24.3	ETS1	rs3802826-A	NR	1E-7		1.124	NR	Illumina [up to 11532644] (imputed)	N
1564	chr11	128406437	128406438	rs3802826	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	11q24.3	ETS1	rs3802826-A	0.484	1E-9		1.12		Illumina [111236] (imputed)	N
1564	chr11	128406774	128406775	rs4520607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.3	ETS1	rs4520607-C	0.524897	1E-18		0.019607894	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr11	128410263	128410264	rs10893884	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs10893884-T	NR	4E-10		1.07	NR	NR [8016731] (imputed)	N
1564	chr11	128410835	128410836	rs3809006	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	11q24.3	ETS1	rs3809006-G	0.49	4E-7		1.06	[1.04-1.09]	Illumina [161311]	N
1564	chr11	128415128	128415129	rs4128561	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	11q24.3	ETS1	rs4128561-?	NR	1E-8		0.1053	unit increase	Illumina [up to 143074]	N
1564	chr11	128418352	128418353	rs35488337	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	11q24.3	ETS1	rs35488337-G	NR	3E-6		0.029008	[0.017-0.041] unit increase	Illumina [13520550] (imputed)	N
1564	chr11	128418352	128418353	rs35488337	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	11q24.3	ETS1	rs35488337-G	0.762	4E-8		0.0239432	[0.015-0.032] unit decrease	Illumina [13520550] (imputed)	N
1564	chr11	128421174	128421175	rs4262739	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q24.3	ETS1	rs4262739-G	NR	4E-12		1.0676917	NR	Affymetrix, Illumina [8278136] (imputed)	N
1564	chr11	128421585	128421586	rs4245080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	11q24.3		rs4245080-G	NR	2E-8		0.0867	[0.057-0.117] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1564	chr11	128436268	128436269	rs11221351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.3	ETS1	rs11221351-C	0.398495	2E-9		0.013524403	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr11	128436268	128436269	rs11221351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.3	ETS1	rs11221351-C	0.398462	8E-10		0.013945748	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr11	128436952	128436953	rs7117932	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	ETS1	rs7117932-A	0.287	8E-6	(MCP1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1564	chr11	128444010	128444011	rs11221357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q24.3		rs11221357-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1564	chr11	128446317	128446318	rs12790965	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ETS1	rs12790965-?	NR	1E-8	(female)	2.46059	[NR] unit increase	Affymetrix [NR] (imputed)	N
1564	chr11	128446577	128446578	rs76284158	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	11q24.3	NR	rs76284158-A	0.07581199999999999	1E-8		0.00923813	[0.0061-0.0124] unit increase	Affymetrix [16582909] (imputed)	N
1564	chr11	128446577	128446578	rs76284158	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	11q24.3	NR	rs76284158-A	0.07581199999999999	3E-6		0.00917688	[0.0057-0.0127] unit increase	Affymetrix [16582965] (imputed)	N
1565	chr11	128460048	128460049	rs12363369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.3		rs12363369-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1565	chr11	128482436	128482437	rs71973827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	11q24.3	RP11-264E20.1, RP11-264E20.2	rs71973827-G	0.185345	2E-11		0.019228747	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr11	128482436	128482437	rs71973827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	11q24.3	RP11-264E20.1, RP11-264E20.2	rs71973827-G	0.185346	7E-16		0.023170833	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr11	128482436	128482437	rs71973827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	11q24.3	RP11-264E20.1, RP11-264E20.2	rs71973827-G	0.1858	2E-9		0.02793791	[0.019-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1565	chr11	128488321	128488322	rs2156698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	11q24.3		rs2156698-A	NR	1E-8		0.0745	[0.049-0.1] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
1565	chr11	128492548	128492549	rs7127911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs7127911-T	0.311853	1E-27				Affymetrix, Illumina [23472807] (imputed)	N
1565	chr11	128492548	128492549	rs7127911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	11q24.3	NR	rs7127911-T	0.266421	3E-29		0.024096	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1565	chr11	128492548	128492549	rs7127911	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	11q24.3	ETS1, FLI1	rs7127911-?	NR	3E-11		0.03015	[0.021-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1565	chr11	128492548	128492549	rs7127911	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	11q24.3	ETS1, FLI1	rs7127911-?	NR	2E-11		0.03064	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1565	chr11	128492738	128492739	rs4937362	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	11q24.3	ETS1	rs4937362-T	0.456	7E-11		1.19	[1.13-1.25]	Illumina [up to 21554489]	N
1565	chr11	128492738	128492739	rs4937362	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	11q24.3	ETS1, FLI1	rs4937362-T	0.68	8E-7		1.09	[1.06-1.13]	Affymetrix, Illumina [1948139]	N
1565	chr11	128495099	128495100	rs12272896	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	11q24.3	NR	rs12272896-C	NR	6E-13		0.0244	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1565	chr11	128495105	128495106	rs7932045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	11q24.3		rs7932045-T	NR	1E-13		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	11q24.3		rs73013527-T	NR	4E-10		0.92	[0.9-0.95]	NR [13810676] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q24.3	ETS1	rs73013527-T	NR	3E-11		0.114504	[0.053-0.176] unit decrease	Illumina [8380626] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q24.3	ETS1	rs73013527-T	0.5	2E-6	(EA)	0.07949	[0.047-0.112] unit decrease	Illumina [8380626] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	11q24.3	ETS1	rs73013527-T	0.28	1E-6	(East Asian)	0.14518	[0.086-0.204] unit decrease	Illumina [8380626] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	ETS1	rs73013527-C	0.72	4E-6	(East Asian)	1.14	[1.08-1.21]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	ETS1	rs73013527-C	0.56	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1565	chr11	128496951	128496952	rs73013527	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	11q24.3	ETS1	rs73013527-C	0.5	1E-6	(EA)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1565	chr11	128498999	128499000	rs7941765	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or systemic lupus erythematosus	2,492 European ancestry chronic lymphocytic leukemia cases, 7,219 European ancestry systemic lupus erythematosus cases, 23,144 European ancestry controls	NA	11q24.3	Intergenic	rs7941765-?	NR	1E-8		1.1280316		Illumina [~ 600000] (imputed)	N
1565	chr11	128498999	128499000	rs7941765	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	11q24.3	ETS1, FLI1	rs7941765-?	0.492	1E-6	(EA)	1.15	[NR]	NR [6344733] (imputed)	N
1565	chr11	128498999	128499000	rs7941765	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	11q24.3	ETS1, FLI1	rs7941765-C		2E-8		1.16	[NR]	Illumina [> 644674] (imputed)	N
1565	chr11	128498999	128499000	rs7941765	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	11q24.3	ETS1, FLI1	rs7941765-C		1E-10		1.14	[1.10-1.19]	Illumina [644674]	N
1565	chr11	128502221	128502222	rs10893900	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	11q24.3	ETS1	rs10893900-G	NR	3E-6		1.048218	NR	Affymetrix, Illumina [8278136] (imputed)	N
1565	chr11	128502495	128502496	rs4936059	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	11q24.3	ETS1, FLI1	rs4936059-G	0.66	7E-10		1.1111112	[1.08-1.15]	Illumina [133816] (imputed)	N
1565	chr11	128525705	128525706	rs55778708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.3	RP11-744N12.3	rs55778708-A	0.185544	9E-25		0.030289901	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr11	128525873	128525873	rs572535663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q24.3	RP11-744N12.3	rs572535663-CT	0.183077	2E-13		0.021941883	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr11	128529841	128529842	rs10790969	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	11q24.3	FLI1	rs10790969-T	0.276	4E-9		0.264	[0.18-0.35] unit increase	Illumina [8400000] (imputed)	N
1565	chr11	128529841	128529842	rs10790969	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	11q24.3	FLI1	rs10790969-T	0.277	4E-13		0.274	[0.2-0.35] unit increase	Illumina [8400000] (imputed)	N
1565	chr11	128529841	128529842	rs10790969	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	11q24.3	FLI1	rs10790969-T	0.276	1E-12	(EA)	0.284	[0.21-0.36] unit increase	Illumina [8400000] (imputed)	N
1565	chr11	128529841	128529842	rs10790969	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	11q24.3	FLI1	rs10790969-T	0.276	1E-11		0.274	[0.2-0.35] unit increase	Illumina [8400000] (imputed)	N
1565	chr11	128548678	128548679	rs547176199	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	11q24.3	RP11-744N12.3	rs547176199-A	0.002	7E-6		0.4872	[0.27-0.7] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1565	chr11	128554154	128554156	rs368070785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.3	RP11-744N12.3	rs368070785-G	0.090681	2E-10		0.02536839	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1565	chr11	128562097	128562098	rs695113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	11q24.3		rs695113-T	0.658519	4E-10		0.0295971	[0.02-0.039] unit increase	Illumina [13469940] (imputed)	N
1565	chr11	128562097	128562098	rs695113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	11q24.3		rs695113-T	NR	1E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1565	chr11	128562097	128562098	rs695113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	11q24.3	NR	rs695113-C	0.342071	4E-11		0.034607	[0.024-0.045] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
1565	chr11	128562097	128562098	rs695113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs695113-T	0.690536	2E-21				Affymetrix, Illumina [19905671] (imputed)	N
1565	chr11	128562097	128562098	rs695113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	11q24.3	NR	rs695113-T	0.696269	4E-14		0.01697	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1565	chr11	128562097	128562098	rs695113	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	11q24.3	SENCR	rs695113-?	NR	2E-13		0.04386	[0.032-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1565	chr11	128565033	128565034	rs10893909	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	11q24.3		rs10893909-C	0.747	3E-15				Affymetrix [10369434] (imputed)	N
1565	chr11	128565033	128565034	rs10893909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	11q24.3	SENCR, FLI1	rs10893909-T	0.2522	1E-14		0.03270082	[0.024-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1565	chr11	128565033	128565034	rs10893909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	11q24.3	SENCR, FLI1	rs10893909-T	0.2522	5E-14		0.03171019	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1565	chr11	128573758	128573759	rs66832523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q24.3	FLI1	rs66832523-A	0.783104	7E-10		0.017635213	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr11	128577623	128577624	rs11221442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.3	FLI1	rs11221442-C	0.251775	6E-36		0.032888535	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1565	chr11	128577623	128577624	rs11221442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.3	FLI1	rs11221442-C	0.251792	3E-35		0.032204624	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr11	128582556	128582557	rs665440	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q24.3	FLI1	rs665440-?	0.073	2E-8			[NR]	Affymetrix, Illumina [152234]	N
1566	chr11	128583974	128583975	rs112595469	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	11q24.3	ETS1	rs112595469-T	0.0284	6E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1566	chr11	128584319	128584320	rs1623169	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	11q24.3	FLI1	rs1623169-T	NR	4E-7		1.088	[1.056-1.121]	NR [5921785] (imputed)	N
1566	chr11	128586154	128586155	rs654723	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	11q24.3	FLI1	rs654723-A	0.62	4E-11		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1566	chr11	128593280	128593281	rs11221443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	11q24.3		rs11221443-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1566	chr11	128593545	128593546	rs12225478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	11q24.3	FLI1	rs12225478-T	0.176353	8E-14		0.021970326	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1566	chr11	128594160	128594161	rs684150	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	11q24.3	NR	rs684150-T	0.381	4E-10		0.914	[0.89-0.94]	Illumina [11270530] (imputed)	N
1566	chr11	128601198	128601199	rs5795634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	11q24.3	FLI1	rs5795634-T	0.175848	4E-24		0.029617023	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1566	chr11	128602826	128602827	rs1939236	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11q24.3	NR	rs1939236-?	NR	5E-6		0.171268	[0.098-0.244] unit decrease	NR [13958389] (imputed)	N
1566	chr11	128604009	128604010	rs595585	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	11q24.3	FLI1	rs595585-?	NR	2E-6		0.271	[0.15-0.4] unit decrease	Illumina [at least 13000000] (imputed)	N
1566	chr11	128604173	128604174	rs607703	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	11q24.3	FLI1	rs607703-T	0.484409	1E-10		0.09201457	[0.064-0.12] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1566	chr11	128604231	128604232	rs605093	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q24.3	FLI1	rs605093-T	0.47	4E-9		1.077		Illumina [715631] (imputed)	N
1566	chr11	128604231	128604232	rs605093	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	11q24.3	FLI1	rs605093-T	0.47	4E-9		1.077		Illumina [715631] (imputed)	N
1566	chr11	128605168	128605169	rs1236176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	11q24.3	FLI1	rs1236176-A	0.272394	1E-11		0.017115375	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1566	chr11	128613627	128613628	rs5019870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	11q24.3	FLI1	rs5019870-G	0.175998	6E-24		0.029465582	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1566	chr11	128629381	128629382	rs672149	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	11q24.3	FLI1	rs672149-?	NR	3E-6		1.604462	[1.314302-1.958681]	Illumina [at least 4483243] (imputed)	N
1566	chr11	128632554	128632555	rs561079	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	11q24.3	FLI1	rs561079-?	NR	4E-8		1.144	NR	Illumina [8966411] (imputed)	N
1566	chr11	128657907	128657908	rs613470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	11q24.3	NR	rs613470-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1566	chr11	128662570	128662571	rs3216602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q24.3		rs3216602-T	NR	6E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1566	chr11	128662578	128662579	rs2250322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	11q24.3	FLI1	rs2250322-C	0.436831	3E-11		0.014967461	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr11	128662578	128662579	rs2250322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	11q24.3	FLI1	rs2250322-C	0.436795	1E-9		0.014079	[0.01-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr11	128663907	128663908	rs680952	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	11q24.3	FLI1	rs680952-?	NR	8E-12		0.020876182	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
1566	chr11	128667427	128667428	rs2268607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	11q24.3	FLI1	rs2268607-C	0.111015	5E-16		0.029090282	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr11	128667427	128667428	rs2268607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	11q24.3	FLI1	rs2268607-C	0.111027	3E-12		0.02504591	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1566	chr11	128667801	128667802	rs648193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.3		rs648193-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1566	chr11	128685353	128685354	rs549941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q24.3		rs549941-C	NR	2E-22		0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1566	chr11	128685361	128685362	rs550621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	11q24.3		rs550621-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1566	chr11	128687134	128687135	rs614802	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	11q24.3	FLI1	rs614802-A	0.682334	8E-14		0.0148027	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1566	chr11	128689422	128689423	rs636312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	11q24.3	FLI1	rs636312-C	NR	2E-12		0.0224085	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1566	chr11	128689443	128689444	rs645601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.3		rs645601-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1566	chr11	128689631	128689632	rs34839878	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	11q24.3		rs34839878-?	NR	5E-13		0.0161546	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1566	chr11	128691919	128691920	rs654169	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q24.3	NR	rs654169-G		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
1566	chr11	128706754	128706755	rs2855793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.3	NR	rs2855793-G	NR	1E-14		0.0251	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1567	chr11	128715120	128715121	rs619399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	11q24.3		rs619399-A	NR	6E-13		0.0204	[0.015-0.026] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1567	chr11	128731303	128731304	rs1893140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	11q24.3	NR	rs1893140-C	NR	1E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1567	chr11	128735665	128735666	rs3016774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	11q24.3		rs3016774-C	NR	4E-8		0.0163	[0.01-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1567	chr11	128737693	128737694	rs2855799	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	11q24.3	NR	rs2855799-A	0.8116	1E-8		0.001643	[0.0011-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	9E-15	(TMSB10)	0.02437	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	7E-9	(SH3BGRL)	0.01968	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	6E-9	(LASP1)	0.04676	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	5E-16	(MAP4)	0.03092	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	5E-14	(PTMA)	0.08131	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	4E-9	(TSN)	0.01898	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	3E-10	(TPM4)	0.146	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	3E-10	(CAST)	0.02164	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	2E-9	(TXN)	0.5192	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	2E-9	(CSRP1)	0.03167	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	1E-10	(TMSB4X)	0.2866	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	1E-10	(LDHB)	0.1682	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128740642	128740643	rs78667661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78667661-A	0.0122	1E-10	(ATOX1)	0.02594	NR unit increase	Illumina [1671387] (imputed)	N
1567	chr11	128762183	128762184	rs66518071	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q24.3	chr11mb128	rs66518071-G	0.253060221	2E-6		0.1682	[0.099-0.238] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1567	chr11	128764569	128764570	rs76097649	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	11q24.3	KCNJ5	rs76097649-A	0.093	1E-20		1.12	[1.10-1.15]	Illumina [34740186] (imputed)	N
1567	chr11	128764569	128764570	rs76097649	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	11q24.3	KCNJ5	rs76097649-A	0.09	9E-21	(EA)	1.14	[1.11-1.17]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1567	chr11	128764569	128764570	rs76097649	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	11q24.3	KCNJ5	rs76097649-A	0.08	2E-20		1.13	[1.1-1.17]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1567	chr11	128764570	128764571	rs75190942	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	11q24.3	KCNJ5	rs75190942-A	0.08	3E-8		1.18	[1.11-1.25]	Affymetrix, Illumina [11795432] (imputed)	N
1567	chr11	128764570	128764571	rs75190942	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	11q24.3	KCNJ5, C11orf45	rs75190942-A	0.09	1E-16		0.4962	[0.38-0.61] unit decrease	Affymetrix [19941912] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	9E-9	(316 ms)	0.0330828	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	9E-9	(312 ms)	0.0329361	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	6E-9	(318 ms)	0.0335618	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	6E-9	(310 ms)	0.0334025	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	5E-8	(332 ms)	0.0319514	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	5E-8	(306 ms)	0.0312542	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	3E-8	(324 ms)	0.0321247	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	3E-8	(308 ms)	0.0319451	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	2E-8	(328 ms)	0.0328045	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	2E-8	(326 ms)	0.032895	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	1E-8	(320 ms)	0.0328843	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128764921	128764922	rs11221500	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	11q24.3	KCNJ5, C11orf45	rs11221500-G	0.619311	1E-8	(314 ms)	0.0326664	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1567	chr11	128767956	128767957	rs78907918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	11q24.3		rs78907918-C	NR	1E-14		0.1449	[0.11-0.18] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1567	chr11	128816220	128816221	rs11221522	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	11q24.3	TP53AIP1, ARHGAP32, 5S_rRNA	rs11221522-A	NR	5E-7		0.2412	unit decrease	Illumina [5767231] (imputed)	N
1567	chr11	128839271	128839272	rs371331393	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	11q24.3	ARHGAP32	rs371331393-A	0.02	9E-27		43.57	[21.84-86.95]	Affymetrix [508192]	N
1568	chr11	128862341	128862342	rs10893946	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	11q24.3	ARHGAP32	rs10893946-?	NR	2E-8		0.375	[0.24-0.51] unit decrease	Affymetrix [11100000] (imputed)	N
1568	chr11	128935027	128935028	rs610106	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	11q24.3	ARHGAP32	rs610106-C	0.814401	7E-6		0.439559	[0.25-0.63] unit increase	Illumina [at least 520076] (imputed)	N
1568	chr11	128962861	128962862	rs525988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.3		rs525988-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1569	chr11	129042313	129042314	rs661527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	11q24.3	NR	rs661527-G	0.682892	6E-12		0.014201	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1569	chr11	129097578	129097579	rs4334028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	11q24.3	NR	rs4334028-C	0.684407	1E-10				Affymetrix, Illumina [17210439] (imputed)	N
1569	chr11	129103091	129103092	rs10219187	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q24.3	ETS1, FLI1, KCNJ5, TP53AIP1, ARHGAP32, BARX2	rs10219187-?		1E-17				Affymetrix, Illumina [NR] (imputed)	N
1570	chr11	129160327	129160328	rs10894020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	11q24.3	ZNF123P	rs10894020-C	0.324855	7E-10		0.014772314	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1570	chr11	129230844	129230845	rs7102494	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q24.3	NR	rs7102494-T	0.1044	6E-7	(EA)	0.0508	[0.031-0.071] unit increase	Illumina [~ 11800000] (imputed)	N
1570	chr11	129232050	129232051	rs140318868	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	11q24.3		rs140318868-G	0.037168926	5E-6		0.04688373	[0.027-0.067] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1571	chr11	129306571	129306572	rs78832579	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs78832579-T	0.02439	3E-8	(GATM)	2.067	NR unit increase	Illumina [1671387] (imputed)	N
1571	chr11	129314182	129314183	rs147520802	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	11q24.3	intergenic	rs147520802-?	0.017	3E-6	(conditional on Round 4 SNPs)	0.109	unit increase	Affymetrix [10109774] (imputed)	N
1571	chr11	129317974	129317975	rs10894038	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	11q24.3	BARX2	rs10894038-?		5E-6	(EA)	0.13294812	[0.076-0.19] unit increase	Illumina [13620258] (imputed)	N
1571	chr11	129321817	129321818	rs958476	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	11q24.3	BARX2	rs958476-?	NR	1E-6				Illumina [491617]	N
1571	chr11	129327690	129327691	rs984176	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	11q24.3	intergenic	rs984176-A	0.46	8E-6	(female)	0.0657	[0.037-0.094] unit increase	Illumina [6380737] (imputed)	N
1571	chr11	129349995	129349996	rs559634825	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	11q24.3		rs559634825-T	0.0016695	6E-6		0.36694	[0.21-0.53] unit decrease	Affymetrix [15580782] (imputed)	N
1572	chr11	129389971	129389972	rs7122144	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11q24.3	NR	rs7122144-?	NR	3E-7		0.0802	[0.05-0.111] unit increase	Illumina [~ 7800000] (imputed)	N
1572	chr11	129409980	129409981	rs6590390	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	11q24.3	BARX2, TMEM45B	rs6590390-?	NR	5E-6		2.13		Illumina [6778521] (imputed)	N
1572	chr11	129445965	129445966	rs149415148	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	11q24.3	NR	rs149415148-G	0.0123	4E-7		0.0317	[0.02-0.044] unit increase	NR [7666894] (imputed)	N
1572	chr11	129454106	129454107	rs10736577	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	11q24.3		rs10736577-G	NR	8E-8		1.0634904	NR	Affymetrix [7846216] (imputed)	N
1572	chr11	129461015	129461016	rs11822830	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q24.3	NR	rs11822830-G	0.5959	2E-14	(EA)	0.0483	[0.036-0.061] unit increase	Illumina [~ 11800000] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11q24.3		rs11820646-T	NR	3E-15		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	11q24.3	intergenic	rs11820646-C	0.6	2E-14	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	11q24.3	NR	rs11820646-C	0.6	2E-7		1.0638298	[1.03-1.1] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	11q24.3	NR	rs11820646-?	0.62	9E-6		1.0752687	[1.03-1.14] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	11q24.3	NR	rs11820646-C	0.5900000000000001	2E-7		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	11q24.3	NR	rs11820646-C	0.59	1E-10		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1572	chr11	129461170	129461171	rs11820646	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	11q24.3	intergenic	rs11820646-C	0.59	1E-9		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1572	chr11	129473479	129473479	rs57382399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	11q24.3		rs57382399-TGTGA	NR	6E-12		0.0686	[0.049-0.088] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1572	chr11	129473689	129473690	rs7107217	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	11q24.3		rs7107217-C	NR	4E-17		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1572	chr11	129473689	129473690	rs7107217	22383897	Long J	2012-02-23	PLoS Genet	Genome-wide association study in east Asians identifies novel susceptibility loci for breast cancer.	Breast cancer	2,918 Chinese ancestry cases, 2,324 Chinese ancestry controls	up to 16,173 East Asian ancestry cases, up to 18,282 East Asian ancestry controls	11q24.3	TMEM45B, BARX2	rs7107217-C	0.36	5E-7		1.08	[1.05-1.11]	Affymetrix [690947]	N
1572	chr11	129473689	129473690	rs7107217	22238593	Palmer ND	2012-01-04	PLoS One	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	11q24.3	TMEM45B, BARX2	rs7107217-C	0.91	3E-7		1.18	[1.10-1.27]	Affymetrix [832357]	N
1572	chr11	129474772	129474773	rs7936804	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	11q24.3		rs7936804-?	NR	2E-6		0.933902	[0.91-0.96]	NR [682398]	N
1573	chr11	129567901	129567902	rs141697342	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	11q24.3	TMEM45B, NFRKB, PRDM10, BARX2	rs141697342-G	NR	1E-6	(resting duration)	0.6406	[0.38-0.9] unit increase	Affymetrix [7141204] (imputed)	N
1573	chr11	129576582	129576583	rs75613039	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	11q24.3	NR	rs75613039-C		5E-6		0.37	[0.21-0.53] SD units decrease	NR [10700000] (imputed)	N
1573	chr11	129593168	129593169	rs10791037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	11q24.3		rs10791037-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1573	chr11	129601006	129601007	rs691956	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	11q24.3	TMEM45B	rs691956-?	NR	3E-7		0.111	[0.068-0.154] unit increase	Illumina [7870334] (imputed)	N
1574	chr11	129649412	129649413	rs11221835	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q24.3	AX746800, TMEM45B	rs11221835-T	0.239175	2E-12	(glycosyl-N-(2-hydroxynervonoyl)-sphingosine (d18:1/24:1(2OH))*)	0.187	[0.13-0.24] unit increase	Illumina [13039987] (imputed)	N
1574	chr11	129698855	129698856	rs10894147	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	TMEM45B	rs10894147-A	0.104	7E-6	(Weight z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1575	chr11	129765452	129765453	rs3108962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	11q24.3	NFRKB	rs3108962-G	0.9718923	1E-10		0.04431184	[0.031-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1575	chr11	129765452	129765453	rs3108962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	11q24.3	NFRKB	rs3108962-G	0.9719019	3E-10		0.043037713	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1575	chr11	129765452	129765453	rs3108962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	11q24.3	NR	rs3108962-A	0.028463	5E-14		0.043596	[0.032-0.055] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1575	chr11	129765452	129765453	rs3108962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	11q24.3		rs3108962-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1575	chr11	129797651	129797652	rs1783920	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs1783920-G	0.03136	4E-9	(LUM)	0.1751	NR unit increase	Illumina [1671387] (imputed)	N
1575	chr11	129850214	129850215	rs7130078	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11q24.3	PRDM10	rs7130078-A	0.057	2E-18		0.44	[0.34-0.54] unit decrease	Affymetrix [339439]	N
1575	chr11	129852179	129852180	rs111703287	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid intima media thickness in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	11q24.3	PRDM10	rs111703287-T	0.014	4E-7		0.119	[0.074-0.164] unit increase	Illumina [63089444] (imputed)	N
1575	chr11	129858566	129858567	rs145658364	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	11q24.3	NR	rs145658364-?	NR	3E-8				Illumina [7760689] (imputed)	N
1576	chr11	129939389	129939390	rs73583419	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APLP2	5,360 Icelandic ancestry individuals	NA	11q24.3		rs73583419-A	0.064	3E-62		0.632695	[0.56-0.71] unit increase	Illumina [7506463] (imputed)	N
1576	chr11	129940742	129940743	rs79537552	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.3	APLP2	rs79537552-C	0.9359375	2E-33	(APLP2, 10627_87_3)	0.5991244	[0.5-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
1576	chr11	129940915	129940916	rs7112159	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q24.3	APLP2	rs7112159-A	0.92640625	4E-20	(APLP2, 7915_31_3)	0.4187538	[0.33-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
1576	chr11	129957769	129957770	rs10431049	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APLP2	5,346 Icelandic ancestry individuals	NA	11q24.3		rs10431049-G	0.06383	2E-31		0.405386	[0.34-0.47] unit increase	Illumina [7506463] (imputed)	N
1577	chr11	130045099	130045100	rs78147979	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	11q24.3	ST14	rs78147979-A	0.013	3E-7	(Tetracyclines [J01AA])	5.01		Illumina [16500000] (imputed)	N
1577	chr11	130051898	130051899	rs60745822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	11q24.3		rs60745822-T	NR	4E-8		0.0182	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1577	chr11	130060568	130060569	rs7126904	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11q24.3	ST14	rs7126904-A	0.072	3E-19		0.44	[0.35-0.54] unit decrease	Affymetrix [339439]	N
1577	chr11	130099284	130099285	rs665654	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	11q24.3	NR	rs665654-G	NR	5E-6		0.8466	NR	Illumina [at least 560000] (imputed)	N
1578	chr11	130264514	130264515	rs4937514	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs4937514-?	NR	3E-12	(CSF)			NR [9227495] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	11q24.3		rs10894192-A	NR	2E-8		0.1362	[0.088-0.184] unit increase	Affymetrix, Illumina [25843950] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	NR	rs10894192-T		2E-13		0.293	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	NR	rs10894192-T		7E-6	(Latino)	0.598	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	NR	rs10894192-T		2E-18	(EA)	0.365	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	NR	rs10894192-T		1E-21		0.369	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	NR	rs10894192-T		6E-62		0.443	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130266116	130266117	rs10894192	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	NR	rs10894192-T		2E-11		0.163	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130268146	130268147	rs4937515	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	11q24.3	ADAMTS8	rs4937515-G	0.398	1E-11		0.009	[0.007-0.011] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1578	chr11	130270854	130270855	rs59317921	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	11q24.3		rs59317921-T	0.355193	1E-12		0.0523459	[0.038-0.067] decrease	Affymetrix [NR]	N
1578	chr11	130270854	130270855	rs59317921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	11q24.3	ADAMTS8	rs59317921-T	NR	7E-10		0.0181941	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1578	chr11	130270854	130270855	rs59317921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	11q24.3	ADAMTS8	rs59317921-T	NR	2E-9		0.0176853	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1578	chr11	130271208	130271209	rs1021205	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs1021205-?	NR	2E-8	(CSF)			NR [9227495] (imputed)	N
1578	chr11	130271646	130271647	rs747249	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	11q24.3		rs747249-A	0.355799	2E-12		0.054941	[0.04-0.07] decrease	Affymetrix [NR]	N
1578	chr11	130271646	130271647	rs747249	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	11q24.3	NR	rs747249-A	0.36	2E-9		0.012	[0.0083-0.0157] unit increase	Affymetrix [2446094] (imputed)	N
1578	chr11	130271646	130271647	rs747249	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	11q24.3	NR	rs747249-A	0.36	5E-8				Affymetrix [2446094] (imputed)	N
1578	chr11	130271646	130271647	rs747249	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	11q24.3	NR	rs747249-A	0.3589	1E-9		0.0114	[0.0077-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1578	chr11	130271646	130271647	rs747249	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	11q24.3	NA	rs747249-A	0.3588	3E-9		0.0111	[0.0074-0.0148] unit increase	NR [~ 27400000] (imputed)	N
1578	chr11	130271646	130271647	rs747249	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	11q24.3	NR	rs747249-A	0.3588	3E-9		0.0111	[0.0074-0.0148] unit increase	NR [~ 27400000] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	11q24.3		rs11222084-T	NR	5E-85		0.0408	[0.037-0.045] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	11q24.3		rs11222084-T	NR	7E-20		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q24.3		rs11222084-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q24.3	AX747213	rs11222084-T	0.6594	7E-17		0.2986	[0.23-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q24.3	AX747213	rs11222084-T	0.6581	5E-67		0.4622	[0.41-0.51] mmHg decrease	Affymetrix [NR] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q24.3	AX747213	rs11222084-T	0.5851	1E-25		0.2736	[0.22-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	11q24.3	ADAMTS8	rs11222084-T	0.346	2E-12	(EA, initial)	0.353	[0.25-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		6E-15		0.317	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		3E-21		0.377	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		3E-17	(EA)	0.36	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		2E-6	(Latino)	0.658	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		8E-69		0.478	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q24.3	ZBTB44, ADAMTS8	rs11222084-A		1E-12		0.175	unit increase	Affymetrix [at least 2696785] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	11q24.3	ADAMTS8	rs11222084-A	0.613	4E-6	(EA)	0.4993	[0.29-0.71] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1578	chr11	130273229	130273230	rs11222084	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	11q24.3	ADAMTS-8	rs11222084-T	0.38	2E-11	(Pulse Pressure)	0.337	[0.24-0.44] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1578	chr11	130276076	130276077	rs7930976	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q24.3	ADAMTS8	rs7930976-A	0.9329	4E-17		0.23	[0.18-0.28] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1578	chr11	130276346	130276347	rs7931326	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		11q24.3	ADAMTS8	rs7931326-C	0.935	1E-6		0.028	[0.016-0.04] dioptres decrease	NR [5901671] (imputed)	N
1578	chr11	130276426	130276427	rs6590455	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	11q24.3		rs6590455-?	NR	5E-8		0.041	[0.025-0.057] unit decrease	Affymetrix [9906178] (imputed)	N
1578	chr11	130278209	130278210	rs3740888	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q24.3		rs3740888-C	0.34	3E-33		12.03	z score increase	Affymetrix [9061022] (imputed)	N
1578	chr11	130278209	130278210	rs3740888	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q24.3	NR	rs3740888-C	0.3972	1E-17				NR [9056863] (imputed)	N
1578	chr11	130278772	130278773	rs61754851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	11q24.3		rs61754851-T	NR	4E-13		0.057	[0.042-0.072] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1578	chr11	130278772	130278773	rs61754851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	11q24.3	ADAMTS8	rs61754851-T	NR	2E-9		0.0798206	[0.054-0.106] unit decrease	Affymetrix [321016] (imputed)	N
1578	chr11	130278772	130278773	rs61754851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	11q24.3		rs61754851-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1578	chr11	130279167	130279168	rs7936928	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q24.3		rs7936928-T	0.35	3E-56		15.8	z score increase	Affymetrix [9061022] (imputed)	N
1578	chr11	130279167	130279168	rs7936928	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	11q24.3		rs7936928-?	NR	8E-9		0.785848	[0.724-0.853]	NR [NR] (imputed)	N
1578	chr11	130279167	130279168	rs7936928	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs7936928-?	NR	1E-18	(CSF)			NR [9227495] (imputed)	N
1578	chr11	130280666	130280667	rs4936098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	11q24.3		rs4936098-G	NR	8E-17		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1578	chr11	130280666	130280667	rs4936098	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	11q24.3	ADAMTS8	rs4936098-G	0.6306	7E-16		1.13	1.10-1.16	Affymetrix [18689289] (imputed)	N
1578	chr11	130280666	130280667	rs4936098	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11q24.3	ADAMTS8	rs4936098-A	0.36	7E-48	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1578	chr11	130280666	130280667	rs4936098	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	11q24.3	ADAMTS8	rs4936098-A	0.36	1E-52	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	11q24.3	ADAMTS8	rs4936099-?		3E-10				NR [7428630] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	11q24.3	ADAMTS8	rs4936099-C	0.41	2E-28		0.0097	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	11q24.3	ADAMTS8	rs4936099-C	0.41	1E-21		0.00852	[0.0068-0.0103] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	11q24.3	ADAMTS8	rs4936099-C	NR	7E-9		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	11q24.3	ADAMTS8	rs4936099-C	NR	3E-9	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	11q24.3	ADAMTS8	rs4936099-C	NR	5E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	11q24.3	ADAMTS8	rs4936099-C	NR	1E-7	(EA)	0.013	[0.0071-0.0189] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130280724	130280725	rs4936099	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	11q24.3	ADAMTS8	rs4936099-C	NR	5E-9		0.009	[0.0051-0.0129] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1578	chr11	130282077	130282078	rs2875238	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	11q24.3	ADAMTS8	rs2875238-T	NR	1E-20		0.0712	unit decrease	Illumina [15409056] (imputed)	N
1578	chr11	130282077	130282078	rs2875238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	11q24.3	NR	rs2875238-C	NR	2E-9		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1578	chr11	130282077	130282078	rs2875238	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	11q24.3		rs2875238-T	0.364962	5E-20		0.0846425	[0.066-0.103] decrease	Affymetrix [11014269] (imputed)	N
1578	chr11	130282077	130282078	rs2875238	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	11q24.3		rs2875238-?	NR	3E-10		0.041	[0.027-0.055] unit increase	Affymetrix [9906178] (imputed)	N
1578	chr11	130284040	130284041	rs55796939	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	11q24.3	ADAMTS8	rs55796939-?	NR	4E-6		0.2	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1578	chr11	130284040	130284041	rs55796939	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	11q24.3	ADAMTS8	rs55796939-T	NR	4E-6	(EA)	0.38	[0.22-0.54] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130284040	130284041	rs55796939	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	11q24.3	ADAMTS8	rs55796939-T	NR	2E-8		0.36	[0.24-0.48] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1578	chr11	130285355	130285356	rs10894196	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs10894196-?	NR	3E-11	(CSF)			NR [9227495] (imputed)	N
1579	chr11	130286765	130286766	rs2291347	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs2291347-?	NR	2E-13	(CSF)			NR [9227495] (imputed)	N
1579	chr11	130288797	130288797	rs34248430	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	11q24.3		rs34248430-?	NR	9E-18				NR [9705931] (imputed)	N
1579	chr11	130289607	130289608	rs765386	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs765386-?	NR	1E-10	(CSF)			NR [9227495] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	11q24.3		rs56009602-C	0.949407	3E-36		0.261371	[0.22-0.3] decrease	Affymetrix [11014269] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	11q24.3	ADAMTS8	rs56009602-C	0.949	5E-54		0.256	[0.22-0.29] unit decrease	Affymetrix [12000000] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	11q24.3	ADAMTS8	rs56009602-C	0.949	6E-30		0.178	[0.15-0.21] unit decrease	Affymetrix [12000000] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	11q24.3	ADAMTS8	rs56009602-?	NA	3E-29		5.99	[4.95-7.03] unit decrease	Affymetrix [5541230] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	11q24.3	ADAMTS8	rs56009602-T	0.046	3E-9		0.38	[0.25-0.50] mm Hg increase	Affymetrix [NR] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal hysteresis	6,645 individuals	2,384 European ancestry individuals	11q24.3	ADAMTS8	rs56009602-T	0.046	4E-9		0.34	[0.23-0.46] mm Hg increase	Affymetrix [NR] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	11q24.3	ADAMTS8	rs56009602-T	0.08	1E-26		7.05	[5.76-8.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1579	chr11	130289611	130289612	rs56009602	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	11q24.3	ADAMTS8	rs56009602-C	0.9488	4E-25		0.321	[0.26-0.38] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1579	chr11	130293893	130293894	rs1552330	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs1552330-?	NR	5E-12	(CSF)			NR [9227495] (imputed)	N
1579	chr11	130293990	130293991	rs6590459	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs6590459-?	NR	4E-8	(left basal forebrain)			NR [9227495] (imputed)	N
1579	chr11	130294326	130294327	rs73044813	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	11q24.3	ADAMTS8	rs73044813-T	0.043	2E-9		6.046	[-1959.834-1971.926] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1579	chr11	130299304	130299304	rs3834447	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs3834447-T	0.955504	3E-9		0.135044	[0.091-0.179] decrease	Affymetrix [11014269] (imputed)	N
1579	chr11	130301658	130301659	rs35884319	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	11q24.3	NR	rs35884319-?	NR	4E-8	(CSF)			NR [9227495] (imputed)	N
1579	chr11	130302381	130302382	rs56057355	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs56057355-G	0.86198	2E-11		0.0876602	[0.062-0.113] decrease	Affymetrix [11014269] (imputed)	N
1579	chr11	130323430	130323431	rs2101289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	11q24.3		rs2101289-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1579	chr11	130404682	130404683	rs7129778	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q24.3	ADAMTS8	rs7129778-?	NR	9E-6	(2-hydroxyglutaric acid)	2.818111	[1.58-4.06] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1580	chr11	130417521	130417522	rs3133394	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	11q24.3	Intergenic	rs3133394-?	NR	1E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
1580	chr11	130417521	130417522	rs3133394	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	11q24.3	Intergenic	rs3133394-?	NR	9E-7	(Additive)	1.814882	[NR]	Illumina [15200000] (imputed)	N
1580	chr11	130420852	130420853	rs978891	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q24.3	ADAMTS8	rs978891-A	0.404686546	2E-7		0.1667	[0.1-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
1580	chr11	130428257	130428258	rs1021455	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	11q24.3	LOC105369574	rs1021455-C	0.811067491812841	4E-6		1.2520347		Illumina [7574753] (imputed)	N
1580	chr11	130437924	130437925	rs11600573	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q24.3		rs11600573-A	0.1	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1580	chr11	130452658	130452659	rs4245090	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q24.3	NR	rs4245090-T	0.3327	1E-16				NR [9056863] (imputed)	N
1580	chr11	130468095	130468096	rs10736586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	11q24.3		rs10736586-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1580	chr11	130469043	130469044	rs10750441	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	11q24.3	ADAMTS8	rs10750441-T	0.669166395	2E-7		0.1717	[0.11-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
1580	chr11	130480591	130480592	rs7130144	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	11q24.3	ADAMTS15, C11orf44	rs7130144-C	0.97	4E-6	(men)	0.256	[0.15-0.36] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1580	chr11	130480591	130480592	rs7130144	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	11q24.3	ADAMTS15, C11orf44	rs7130144-C	0.97	2E-6		0.166	[0.097-0.235] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1580	chr11	130492507	130492508	rs1921571	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	11q24.3		rs1921571-?	NR	4E-8				NR [9705931] (imputed)	N
1580	chr11	130517050	130517051	rs146933175	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	11q24.3	NR	rs146933175-?	NR	2E-9		5.997	NR z score increase	Illumina [at least 830937] (imputed)	N
1580	chr11	130529218	130529219	rs12792526	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	11q24.3	ADAMTS15	rs12792526-A	0.87	4E-6	(Age 20-60 years)	0.2189	[0.13-0.31] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1580	chr11	130529218	130529219	rs12792526	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	11q24.3	ADAMTS15	rs12792526-A	0.87	3E-6	(Age 20-81 years)	0.2011	[0.12-0.29] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1581	chr11	130569631	130569632	rs73021646	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C11orf44	rs73021646-?	NR	2E-10	(male)	2.62101	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1581	chr11	130570790	130570791	rs118081607	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	11q24.3	NR	rs118081607-T	0.007795	2E-6		0.8048	[0.48-1.13] unit increase	Illumina [10677593] (imputed)	N
1581	chr11	130599853	130599854	rs55804733	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q24.3	NR	rs55804733-C	0.03833	1E-9	(LGALS1)	0.196	NR unit increase	Illumina [1671387] (imputed)	N
1581	chr11	130624370	130624371	rs28884829	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	11q24.3		rs28884829-A	0.018539	6E-7		2.290426	NR	Affymetrix [7846216] (imputed)	N
1581	chr11	130629121	130629122	rs10894239	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q24.3	C11orf44, TRUB2, COQ4	rs10894239-A	0.466	6E-6	(WC change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1582	chr11	130690161	130690162	rs1944146	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	11q24.3	LOC100507431	rs1944146-A	0.524	3E-6		1.08	[1.046-1.115]	Affymetrix, Illumina [NR] (imputed)	N
1582	chr11	130709066	130709067	rs7943936	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q24.3	NR	rs7943936-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1582	chr11	130714612	130714613	rs10894265	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	11q24.3	NR	rs10894265-?	NR	3E-7	(Additive model)			Affymetrix [NR] (imputed)	N
1582	chr11	130714612	130714613	rs10894265	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety	5,584 cases, 9,801 controls	NA	11q24.3	NR	rs10894265-?	NR	5E-7	(Additive model)			Affymetrix [NR] (imputed)	N
1582	chr11	130718213	130718214	rs35274053	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11q24.3	NR	rs35274053-?		1E-9				NR [8377093]	N
1582	chr11	130718629	130718630	rs10791097	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs10791097-?	NR	1E-10				NR [2625067]	N
1582	chr11	130718629	130718630	rs10791097	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs10791097-T	0.4742	1E-11		0.073838554	[0.052-0.095] unit increase	NR [NR]	N
1582	chr11	130718629	130718630	rs10791097	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		SNX19	rs10791097-?		2E-10				NR [6786993] (imputed)	N
1582	chr11	130718629	130718630	rs10791097	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		LOC100507431, LOC103611081, SNX19	rs10791097-T		1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1582	chr11	130718629	130718630	rs10791097	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs10791097-T	NR	2E-12		1.08	[NR]	Illumina [7158791] (imputed)	N
1582	chr11	130718629	130718630	rs10791097	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		SNX19	rs10791097-T	0.46	1E-12		1.076	[1.055-1.098]	Affymetrix, Illumina [9005918] (imputed)	N
1582	chr11	130718629	130718630	rs10791097	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		ADAMTS15	rs10791097-?	NR	7E-6	(TAG 50:2)	0.15207753	[0.086-0.219] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1582	chr11	130718710	130718711	rs10791098	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q24.3	LOC10050743	rs10791098-T	NR	2E-12	(EA)	1.0799136	[1.06-1.1]	Illumina [6627481] (imputed)	N
1582	chr11	130718812	130718813	rs10791099	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q24.3	NR	rs10791099-?	NR	1E-8		1.0535854	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1582	chr11	130719060	130719061	rs10750450	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q24.3	NR	rs10750450-?	NR	7E-13				Illumina [up to 5582932] (imputed)	N
1582	chr11	130719081	130719085	rs61435928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q24.3		rs61435928-A	NR	2E-12		0.0116	[0.0085-0.0147] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1582	chr11	130729429	130729430	rs4601795	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q24.3	SNX19	rs4601795-T	0.474164	5E-6	(females)	0.00589	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1582	chr11	130729429	130729430	rs4601795	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	11q24.3	SNX19	rs4601795-T	0.474164	4E-7		0.006792	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1582	chr11	130731436	130731437	rs73022874	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11q24.3	NR	rs73022874-?		5E-10				NR [8377093]	N
1582	chr11	130749349	130749351	rs199569565	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q24.3		rs199569565-T	0.53	3E-12				NR [NR] (imputed)	N
1582	chr11	130749349	130749351	rs199569565	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q24.3		rs199569565-T	0.53	2E-15		0.012	% increase	NR [NR] (imputed)	N
1582	chr11	130756175	130756176	rs4459316	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q24.3	NA	rs4459316-T	0.55	3E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
1582	chr11	130760150	130760151	rs146371985	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SNX19	rs146371985-?	NR	6E-9	(female)	4.42302	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1582	chr11	130774430	130774431	rs58865823	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	11q25	SNX19	rs58865823-A	0.1846	2E-8		0.4414	[0.29-0.6] mmHg increase	Affymetrix [NR] (imputed)	N
1582	chr11	130779067	130779068	rs11222386	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	11q25	SNX19	rs11222386-C	0.1972	8E-13		0.1558	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1582	chr11	130779067	130779068	rs11222386	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	11q25	SNX19	rs11222386-G		4E-8		0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1582	chr11	130795697	130795698	rs7944782	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs7944782-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1582	chr11	130795697	130795698	rs7944782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs7944782-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1582	chr11	130795697	130795698	rs7944782	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs7944782-T	0.5016	4E-17		0.0144	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1582	chr11	130796247	130796248	rs7933085	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	11q25	NA	rs7933085-A	0.4899	2E-15		0.0152	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1582	chr11	130805333	130805334	rs7112616	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	11q25	NR	rs7112616-T	0.506	2E-9		0.06562045	[0.044-0.087] unit increase	NR [NR]	N
1583	chr11	130811355	130811356	rs35774874	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	11q25	NR	rs35774874-T	0.494	3E-8		0.061993353	[0.04-0.084] unit increase	NR [NR]	N
1583	chr11	130811355	130811356	rs35774874	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q25	SNX19	rs35774874-?		2E-9				NR [6786993] (imputed)	N
1583	chr11	130811355	130811356	rs35774874	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	11q25	SNX19	rs35774874-?	NR	2E-11		1.071	[1.05-1.09]	Illumina [8000000] (imputed)	N
1583	chr11	130817578	130817579	rs7940866	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	11q25	SNX19	rs7940866-T	0.487	2E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
1583	chr11	130830747	130830748	rs10894294	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	11q25	intergenic	rs10894294-?	NR	3E-7		1.1	[NR]	Affymetrix [745006]	N
1583	chr11	130830747	130830748	rs10894294	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	11q25	NR	rs10894294-?	NR	3E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [1252901] (imputed)	N
1583	chr11	130842795	130842796	rs148496442	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	11q25		rs148496442-?	NR	1E-6		0.7879793	[0.47-1.11] unit increase	Illumina [9875426] (imputed)	N
1583	chr11	130846431	130846432	rs10791106	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q25	RN7SL167P	rs10791106-?	NR	1E-15		0.016241916	[0.012-0.02] unit increase	NR [7306098]	N
1583	chr11	130854649	130854650	rs11222416	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	11q25		rs11222416-T	0.416	4E-9		44.91861	z score increase	NR [6814003]	N
1583	chr11	130856098	130856099	rs10791111	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q25	SNX19	rs10791111-T		1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1583	chr11	130873164	130873165	rs10791113	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q25	SNX19	rs10791113-A	0.493942	5E-10		0.00856944	[0.0059-0.0113] unit decrease	Affymetrix [12370749]	N
1583	chr11	130877477	130877478	rs7949071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q25		rs7949071-C	NR	9E-13		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1583	chr11	130891894	130891895	rs10894308	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q25	SNX19	rs10894308-G	NR	9E-9		1.0582011	[1.04-1.08]	Illumina [6627481] (imputed)	N
1583	chr11	130891894	130891895	rs10894308	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q25	SNX19	rs10894308-G	NR	2E-8	(EA)	1.064396	[1.04-1.09]	Illumina [6627481] (imputed)	N
1583	chr11	130891894	130891895	rs10894308	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q25	SNX19	rs10894308-G	NR	2E-8		1.0559661	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1583	chr11	130921332	130921333	rs12576258	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q25	NR	rs12576258-?	NR	8E-11				Affymetrix [NR]	N
1584	chr11	130968425	130968426	rs80083550	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	11q25	NR	rs80083550-A	0.01	8E-6		1.79	[1.54-2.04]	Illumina [8468885] (imputed)	N
1584	chr11	131013624	131013625	rs1793596	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	11q25	NR	rs1793596-A	0.109	6E-6		0.2324	[0.13-0.33] unit increase	Illumina [up to 730525]	N
1584	chr11	131019870	131019871	rs1793821	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	11q25	NR	rs1793821-T	0.113	5E-6		0.2341	[0.14-0.33] unit increase	Illumina [up to 730525]	N
1585	chr11	131143642	131143643	rs7104201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTM	5,364 Icelandic ancestry individuals	NA	11q25		rs7104201-C	0.4139	2E-59		0.295409	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
1585	chr11	131146749	131146750	rs7925908	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (time dependent analysis)	164 European ancestry osteonecrosis cases, 4 Black osteonecrosis cases, 58 Hispanic osteonecrosis cases, 5 Asian ancestry osteonecrosis cases, 19 other ancestry osteonecrosis cases,  1,111 European ancestry treated controls, 135 Black treated controls, 543 Hispanic treated controls, 43 Asian ancestry treated controls, 203 other ancestry treated controls	NA	11q25	NTM	rs7925908-C	0.341	1E-6				Affymetrix, Illumina [NR] (imputed)	N
1585	chr11	131146749	131146750	rs7925908	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	11q25	NTM	rs7925908-?	NR	5E-7				Affymetrix, Illumina [NR] (imputed)	N
1585	chr11	131167704	131167705	rs77087904	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	11q25		rs77087904-T	0.125	5E-7				Affymetrix, Illumina [6400000] (imputed)	N
1585	chr11	131167909	131167910	rs80175218	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	11q25		rs80175218-A	0.884	4E-8				Affymetrix, Illumina [6400000] (imputed)	N
1585	chr11	131169948	131169949	rs12576780	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	11q25		rs12576780-A	0.875	7E-7				Affymetrix, Illumina [6400000] (imputed)	N
1585	chr11	131190602	131190603	rs139945292	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	11q25		rs139945292-T	0.089	2E-8				Affymetrix, Illumina [6400000] (imputed)	N
1585	chr11	131196395	131196396	rs2511504	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q25	NTM	rs2511504-T	0.58828125	6E-32	(NTM, 10907_116_3)	0.2828122	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1585	chr11	131196395	131196396	rs2511504	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q25	NTM	rs2511504-T	0.58828125	2E-58	(NTM, 8428_102_3)	0.38118866	[0.34-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1585	chr11	131198744	131198745	rs2511781	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTM	5,364 Icelandic ancestry individuals	NA	11q25		rs2511781-T	0.4072	7E-97		0.369464	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
1585	chr11	131198744	131198745	rs2511781	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTM	5,362 Icelandic ancestry individuals	NA	11q25		rs2511781-T	0.4072	5E-51		0.273328	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
1586	chr11	131204523	131204524	rs2511774	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x beta blockers interaction in hypertension	9,195 European ancestry individuals	NA	11q25		rs2511774-C	0.844	8E-10				Affymetrix, Illumina [6400000] (imputed)	N
1586	chr11	131205420	131205421	rs12574281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q25		rs12574281-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1586	chr11	131205420	131205421	rs12574281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs12574281-A	0.631	3E-8		0.008	[0.0051-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1586	chr11	131213873	131213874	rs11606643	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	11q25	NTM	rs11606643-A	NR	3E-8	(GO:0045087|BP|03|innate immune response)	5.5346055	NR Z-score decrease	Illumina [8100000] (imputed)	N
1586	chr11	131245086	131245087	rs35974940	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	11q25	NTM	rs35974940-T		1E-6		3.2303	[1.92-4.54] unit increase	Illumina [7576458] (imputed)	N
1586	chr11	131278675	131278676	rs10791143	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	11q25	NTM	rs10791143-G	0.62	2E-11		0.0074861	[0.0053-0.0097] unit increase	NR [16367095] (imputed)	N
1586	chr11	131286684	131286685	rs1448355	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	11q25	NR	rs1448355-?		1E-10		0.0146118	[0.01-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1586	chr11	131289819	131289820	rs7108020	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	11q25	NR	rs7108020-C	0.36	9E-12		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1586	chr11	131289819	131289820	rs7108020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q25	Intergenic	rs7108020-A	0.6544	2E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1586	chr11	131289819	131289820	rs7108020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs7108020-A	0.6475	4E-14		0.0111	[0.0082-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1586	chr11	131289819	131289820	rs7108020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q25	Intergenic	rs7108020-A	0.6475	1E-15	(MTAG)	0.011	[0.0083-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1586	chr11	131291727	131291728	rs1550973	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	11q25	NR	rs1550973-A	0.3506	2E-9		0.0139657	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1586	chr11	131291808	131291809	rs1550972	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q25	NTM	rs1550972-?	NR	1E-8		0.0118359495	[0.0078-0.0159] unit decrease	NR [7306098]	N
1586	chr11	131296564	131296565	rs1448354	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	11q25	NTM	rs1448354-G	NR	5E-8		0.0069314	[0.0044-0.0094] unit increase	NR [16367095] (imputed)	N
1586	chr11	131300367	131300368	rs35659386	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs35659386-A	NR	9E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1586	chr11	131320069	131320070	rs1550976	21182207	Salyakina D	2010-12-01	Autism Res	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	11q25	NTM	rs1550976-?	0.33	2E-6				Illumina [439282] (imputed)	N
1586	chr11	131325245	131325246	rs11601906	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	NTM	rs11601906-A	0.021	2E-6	(Ft4 )	0.04	[NR] ng/dL increase	Illumina [899892]	N
1587	chr11	131336073	131336074	rs992564	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA		NR	rs992564-?	NR	4E-6		1.6221	[NR]	Affymetrix [722112]	N
1587	chr11	131343277	131343278	rs11222660	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	SNX19	rs11222660-?	NR	3E-6	(leucine)	0.23220143	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1587	chr11	131343277	131343278	rs11222660	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	SNX19	rs11222660-?	NR	1E-7	(isoleucine)	0.26215872	[0.16-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1587	chr11	131350967	131350968	rs12421680	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	11q25	NTM	rs12421680-A	NR	6E-6		0.41	[0.23-0.59] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1587	chr11	131371018	131371019	rs433406	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	11q25	NTM	rs433406-G	0.47	3E-6	(Birth rate, additive)			Affymetrix [248210]	N
1587	chr11	131406833	131406834	rs187798970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometrial cancer	2,188 European ancestry cases, 237,839 European ancestry controls, 1,200 East Asian ancestry cases, 60,614 East Asian ancestry controls	NA	11q25		rs187798970-T	NR	2E-8		3.4507	[2.24-4.66] unit increase	Affymetrix, Illumina [25777865] (imputed)	N
1587	chr11	131442150	131442151	rs1040103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	11q25		rs1040103-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1587	chr11	131449364	131449365	rs7925725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	11q25		rs7925725-C	0.41	7E-9				NR [NR] (imputed)	N
1587	chr11	131449364	131449365	rs7925725	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	11q25		rs7925725-C	0.41	2E-13		0.011	% increase	NR [NR] (imputed)	N
1587	chr11	131451946	131451947	rs11222703	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	11q25	NR	rs11222703-C	0.587942	4E-8		0.0115924	[0.0075-0.0157] unit decrease	NR [NR]	N
1587	chr11	131452911	131452912	rs12788343	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q25	NTM	rs12788343-T	0.590818	4E-12		0.00965197	[0.0069-0.0124] unit decrease	Affymetrix [12370749]	N
1587	chr11	131452911	131452912	rs12788343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs12788343-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1587	chr11	131453947	131453948	rs1040102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs1040102-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1587	chr11	131463915	131463916	rs10750486	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	11q25	NTM	rs10750486-A	0.498564	3E-8		5.546	unit increase	NR [10847151] (imputed)	N
1588	chr11	131467379	131467380	rs2458778	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	11q25	NTM	rs2458778-C	NR	4E-6	(men)	0.2460361	[0.14-0.35] unit decrease	Illumina [5527232] (imputed)	N
1588	chr11	131469204	131469205	rs71483681	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	11q25	NTM	rs71483681-T	0.487454	1E-8		0.00806318	[0.0053-0.0108] unit decrease	Affymetrix [12370749]	N
1588	chr11	131477246	131477247	rs1506662	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs1506662-A	0.5281	3E-12		0.0118	[0.0085-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1588	chr11	131479267	131479268	rs4936142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs4936142-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1588	chr11	131500258	131500259	rs78430868	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	11q25	NTM	rs78430868-A	0.068	1E-16		0.39	[0.3-0.48] unit decrease	Affymetrix [339439]	N
1588	chr11	131512016	131512017	rs76140786	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	11q25	NR	rs76140786-?	0.14	3E-6		1.75	[1.38-2.23]	Illumina [5934489] (imputed)	N
1588	chr11	131515655	131515656	rs2658882	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	11q25	NTM	rs2658882-?	NR	9E-6	(total PUFA)			Illumina [621723]	N
1589	chr11	131605730	131605730	rs57244613	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	11q25		rs57244613-?	NR	4E-6		0.8278937	[0.48-1.18] unit increase	Illumina [9842460] (imputed)	N
1589	chr11	131606983	131606984	rs73035809	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	11q25	NR	rs73035809-G	0.97	8E-6	(EA)	0.39	[0.22-0.56] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1589	chr11	131724901	131724902	rs11827555	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	11q25	NR	rs11827555-?	NR	4E-6	(AA)	4.84	[3.74-5.94]	Illumina [905956]	N
1590	chr11	131729397	131729398	rs148837593	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	11q25	NR	rs148837593-?	NR	7E-6		0.0077708	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1590	chr11	131734930	131734931	rs117275526	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs117275526-A	0.02613	4E-9	(CALD1)	0.07231	NR unit increase	Illumina [1671387] (imputed)	N
1590	chr11	131747182	131747183	rs693249	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	11q25	NTM	rs693249-G	NR	5E-6		0.0180037	[0.01-0.026] unit increase	Illumina [13520550] (imputed)	N
1590	chr11	131756694	131756695	rs67037181	33093117	Yan Q	2020-10-22	Eur Respir J	A genome-wide association study of severe asthma exacerbations in Latino children and adolescents.	Severe exacerbations in childhood asthma	2,509 Latino cases, 1,501 Latino controls	NA	11q25	NTM	rs67037181-?	NR	9E-7				Affymetrix, Illumina [~ 6000000] (imputed)	N
1590	chr11	131758169	131758170	rs56184986	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	11q25	NTM	rs56184986-T	NR	2E-6		0.0318671	[0.019-0.045] unit increase	Illumina [13519193] (imputed)	N
1590	chr11	131758327	131758328	rs75038630	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	11q25	NTM	rs75038630-A	0.06	5E-6	(mYscore, continuous, adjusted for BMI)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [~ 31000000] (imputed)	N
1590	chr11	131758327	131758328	rs75038630	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	11q25	NTM	rs75038630-A	0.06	1E-7	(mYscore, binary)	2.09		Affymetrix, Illumina [~ 31000000] (imputed)	N
1590	chr11	131769401	131769402	rs9787911	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	11q25	NTM	rs9787911-?	NR	4E-6			NR	Affymetrix [2067592] (imputed)	N
1590	chr11	131806487	131806488	rs112479596	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	11q25		rs112479596-C	0.02604	1E-6		1.4688601	NR	Affymetrix [7846216] (imputed)	N
1590	chr11	131807170	131807171	rs12098973	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	11q25	HNT	rs12098973-G	NR	1E-6	(Dichotomous variable)	2.17	[1.59-3.03]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1590	chr11	131816629	131816630	rs511311	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	11q25		rs511311-?	NR	4E-6		0.225	[0.13-0.32] unit increase	Illumina [5082878] (imputed)	N
1590	chr11	131818782	131818783	rs56344002	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	11q25		rs56344002-A	NR	4E-7	11	1.03	unit decrease	Illumina [487523]	N
1591	chr11	131877418	131877419	rs74863301	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs74863301-C	0.01045	3E-10	(ALDH16A1)	0.03942	NR unit increase	Illumina [1671387] (imputed)	N
1591	chr11	131918548	131918549	rs73030374	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NTM	rs73030374-?	NR	7E-12	(female)	2.32651	[NR] unit increase	Affymetrix [NR] (imputed)	N
1591	chr11	131918548	131918549	rs73030374	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NTM	rs73030374-?	NR	1E-8		1.82291	[NR] unit increase	Affymetrix [NR] (imputed)	N
1591	chr11	131928970	131928971	rs1790165	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	11q25	NTM, OPCML	rs1790165-?		7E-29				Affymetrix, Illumina [NR] (imputed)	N
1591	chr11	131928970	131928971	rs1790165	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	11q25	NTM	rs1790165-A	0.4113	7E-12		6.854	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1591	chr11	131928970	131928971	rs1790165	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	11q25	NR	rs1790165-A	0.423	2E-12		0.0504	[0.036-0.065] unit increase	Illumina [~ 10600000] (imputed)	N
1591	chr11	131931530	131931531	rs1793639	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	11q25	NTM	rs1793639-?	NR	1E-15		1.061	[1.046-1.076]	Illumina [13762925] (imputed)	N
1591	chr11	131933510	131933511	rs1015053	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q25	NR	rs1015053-T		1E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1591	chr11	131934925	131934926	rs1793636	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs1793636-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1591	chr11	131957292	131957293	rs1625427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs1625427-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1591	chr11	131966263	131966264	rs1106363	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q25		rs1106363-C	0.67	7E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1591	chr11	131966263	131966264	rs1106363	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q25	NR	rs1106363-T	0.345	3E-12		0.00793514	[0.0057-0.0102] unit increase	NR [9732723] (imputed)	N
1591	chr11	131966263	131966264	rs1106363	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q25	NR	rs1106363-T	0.344579	9E-11	(Conditioned on chr11:132098205)	0.017374555	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
1591	chr11	131966263	131966264	rs1106363	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	11q25	NR	rs1106363-T	0.343	2E-8		0.00861905	[0.0056-0.0116] unit decrease	NR [9732723] (imputed)	N
1591	chr11	131966906	131966907	rs74802478	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	11q25	NR	rs74802478-?		4E-9		0.0166419	[0.011-0.022] unit increase	Affymetrix [19400418] (imputed)	N
1591	chr11	131972521	131972522	rs4491239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	11q25		rs4491239-?	NR	7E-28				NR [~ 8900000] (imputed)	N
1591	chr11	131984329	131984330	rs12222235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs12222235-T	0.3305	2E-12		0.0128	[0.0093-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
1592	chr11	131996437	131996438	rs111530275	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	11q25	NTM	rs111530275-G	0.96	6E-6		1.86	[1.06-2.66] g/day increase	Affymetrix [10353649] (imputed)	N
1592	chr11	132010116	132010117	rs4468361	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	11q25	OPCML, NTM	rs4468361-T	0.32	8E-6	(TNFA)			Illumina [588352]	N
1592	chr11	132036751	132036752	rs74954142	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	11q25	NR	rs74954142-G	0.111	7E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1592	chr11	132039897	132039898	rs145397878	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	11q25	NTM	rs145397878-C	0.005	2E-6		5.81	[2.80-12.09]	Illumina [8672852] (imputed)	N
1592	chr11	132088916	132088917	rs1449435	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q25	OPCML	rs1449435-A	0.4232	2E-8		0.012346945	[0.008-0.0167] unit increase	Affymetrix [11514654] (imputed)	N
1592	chr11	132098204	132098205	rs2010921	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q25		rs2010921-G	0.682	1E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1592	chr11	132098204	132098205	rs2010921	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q25	NR	rs2010921-A	0.311	1E-13		0.0086703	[0.0064-0.011] unit increase	NR [9732723] (imputed)	N
1592	chr11	132098204	132098205	rs2010921	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	11q25	NR	rs2010921-A	0.311	2E-10		0.017429141	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
1592	chr11	132098204	132098205	rs2010921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	11q25		rs2010921-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1593	chr11	132188421	132188422	rs3099769	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q25	OPCML	rs3099769-A	0.4091	2E-12		0.014361975	[0.01-0.018] unit increase	Affymetrix [11514654] (imputed)	N
1593	chr11	132210361	132210362	rs111780443	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	11q25		rs111780443-T	0.04512	3E-8		0.3659	[0.24-0.5] unit decrease	Illumina [17945511] (imputed)	N
1593	chr11	132212971	132212972	rs662024	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11q25	NA	rs662024-G		2E-9		0.0111769	[0.0075-0.0148] unit decrease	Illumina [13288253] (imputed)	N
1594	chr11	132280285	132280286	rs78058594	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q25	OPCML	rs78058594-A	0.9439	4E-9		0.027763488	[0.019-0.037] unit increase	Affymetrix [11514654] (imputed)	N
1594	chr11	132281650	132281651	rs1940013	17903308	Gottlieb DJ	2007-09-19	BMC Med Genet	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	11q25	OPCML	rs1940013-?	NR	6E-6	(Bedtime)			Affymetrix [70897]	N
1594	chr11	132322704	132322705	rs12419742	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	11q25	OPCML	rs12419742-?	0.92	9E-6	(Turkish)	2.5	[1.64-3.7]	Illumina [up to 547389]	N
1595	chr11	132385437	132385438	rs7124348	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	11q25	OPCML	rs7124348-A	0.7656	9E-9		0.013640967	[0.009-0.0183] unit decrease	Affymetrix [11514654] (imputed)	N
1595	chr11	132391655	132391656	rs563954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs563954-A	0.4639	1E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1595	chr11	132391655	132391656	rs563954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q25	Intergenic	rs563954-A	0.4639	3E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1595	chr11	132391655	132391656	rs563954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q25	Intergenic	rs563954-A	0.4649	7E-9	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1595	chr11	132481172	132481173	rs9787796	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	11q25	OPCML	rs9787796-T	0.152	2E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1595	chr11	132494524	132494525	rs80068859	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	11q25	OPCML	rs80068859-G	0.0309	9E-6		2.299	[1.592-3.321]	Affymetrix, Illumina [14074516] (imputed)	N
1595	chr11	132501350	132501351	rs12282583	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	11q25	OPCML	rs12282583-T	0.0381225773276363	5E-7	(P_Lentisphaerae_HB)	0.778027	[0.48-1.08] unit increase	Illumina [7711310] (imputed)	N
1595	chr11	132502211	132502212	rs9633970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs9633970-T	0.7606	3E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1596	chr11	132539473	132539474	rs1784176	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	HNT	rs1784176-?	NR	7E-6	(TAG 54:3)	0.22776705	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1596	chr11	132539473	132539474	rs1784176	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	HNT	rs1784176-?	NR	2E-6	(LPC 16:1)	0.24036103	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1596	chr11	132568253	132568254	rs2917568	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q25	NR	rs2917568-?	NR	1E-8		1.05285	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1596	chr11	132568254	132568255	rs2917569	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs2917569-T	NR	4E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1596	chr11	132569760	132569761	rs2917570	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	11q25	OPCML	rs2917570-T	0.497	5E-6			[NR]	Illumina [625127]	N
1596	chr11	132575990	132575991	rs117974989	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	11q25	OPCML	rs117974989-G	0.99	2E-6		3.030303	[1.92-4.76]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1596	chr11	132576545	132576546	rs11223177	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	11q25	NR	rs11223177-T	0.2	7E-6				Illumina [5378266] (imputed)	N
1596	chr11	132584118	132584119	rs1793257	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol dependence	7,188 European ancestry individuals	NA	11q25	OPCML	rs1793257-A	0.037	7E-6		0.83	[NR] unit increase	Illumina [527829]	N
1596	chr11	132616072	132616073	rs3016390	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	11q25	OPCML	rs3016390-G	0.6194	3E-7		0.0079	[0.005-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
1596	chr11	132640000	132640001	rs2105808	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs2105808-A	0.6745	3E-11		0.012	[0.0085-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1596	chr11	132641745	132641746	rs10894604	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	11q25	OPCML	rs10894604-T	0.83	4E-7	(BMI_pooled)	0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [3200000] (imputed)	N
1596	chr11	132641958	132641959	rs4936175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs4936175-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1597	chr11	132652553	132652554	rs11223204	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q25	OPCML	rs11223204-A	0.565776	3E-10		0.00873553	[0.006-0.0115] unit decrease	Affymetrix [12370749]	N
1597	chr11	132662670	132662671	rs67661275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs67661275-A	0.9103	4E-8		0.0134	[0.0085-0.0183] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1597	chr11	132663649	132663650	rs4076157	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	11q25	NR	rs4076157-G		3E-6		1.772	[NR]	NR [NR]	N
1597	chr11	132673204	132673205	rs7350477	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs7350477-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1597	chr11	132701182	132701183	rs34814382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q25	Intergenic	rs34814382-A	0.1103	7E-10	(MTAG)	0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1597	chr11	132701182	132701183	rs34814382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q25	Intergenic	rs34814382-C	0.8897	4E-8		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1597	chr11	132702487	132702488	rs7938407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q25	Intergenic	rs7938407-T	0.1103	8E-13	(MTAG)	0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1597	chr11	132702487	132702488	rs7938407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	11q25	Intergenic	rs7938407-C	0.8897	5E-9		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1597	chr11	132702487	132702488	rs7938407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q25	Intergenic	rs7938407-T	0.1108	2E-9	(MTAG)	0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1597	chr11	132716368	132716369	rs2221540	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	11q25	OPCML	rs2221540-A	NR	7E-6		4.492	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1597	chr11	132716368	132716369	rs2221540	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	7,834 European ancestry cases, 15,258 European ancestry controls	NA	11q25	OPCML	rs2221540-G	NR	4E-7		0.6395	NR unit increase	Affymetrix [557813] (imputed)	N
1597	chr11	132719645	132719646	rs4575282	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	7,834 European ancestry cases, 15,258 European ancestry controls	NA	11q25	OPCML	rs4575282-C	NR	3E-6		0.5776	NR unit increase	Affymetrix [557813] (imputed)	N
1597	chr11	132741152	132741153	rs75887718	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	11q25		rs75887718-G	0.07006	6E-6		1.401	[1.21-1.621]	Affymetrix [7975321] (imputed)	N
1597	chr11	132757669	132757670	rs1027796	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	11q25	OPCML	rs1027796-?	NR	4E-6		2.38	[1.62-3.48]	Illumina [498081]	N
1597	chr11	132768790	132768791	rs11223270	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	11q25	NR	rs11223270-A	0.3137	8E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1598	chr11	132829861	132829862	rs1567127	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	11q25	OPCML	rs1567127-G	0.20	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1598	chr11	132873643	132873644	rs2336592	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	11q25	OPCML	rs2336592-C	0.63	8E-6		0.12	[0.061-0.179] unit decrease	Illumina [14638245] (imputed)	N
1598	chr11	132875596	132875597	rs11601484	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	11q25	NR	rs11601484-T	0.1522	4E-6		0.1961	[0.11-0.28] unit decrease	Illumina [10677593] (imputed)	N
1598	chr11	132896190	132896191	rs10750524	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q25	NR	rs10750524-C	0.526	2E-8		0.00607355	[0.004-0.0082] unit decrease	NR [9732723] (imputed)	N
1599	chr11	132918463	132918464	rs11223339	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	HNT	rs11223339-?	NR	8E-6	(aminoadipic acid)	0.20125207	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1599	chr11	132991105	132991106	rs487270	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	11q25	NR	rs487270-C		4E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
1600	chr11	133039198	133039199	rs7104871	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	11q25	OPCML	rs7104871-?	NR	7E-8	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1600	chr11	133051090	133051091	rs11606197	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	11q25	OPCML	rs11606197-C	0.16	7E-6		0.25	unit increase	Illumina [5600000] (imputed)	N
1600	chr11	133057480	133057481	rs55983503	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	11q25	OPCML	rs55983503-G	0.154425624128451	7E-7		0.0037265	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1600	chr11	133074662	133074663	rs2602813	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	11q25	NR	rs2602813-?	NR	4E-14				Affymetrix [NR]	N
1600	chr11	133095791	133095792	rs546833	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	11q25	NR	rs546833-?	NR	3E-6		0.0357	[0.021-0.051] unit decrease	Illumina [~ 7800000] (imputed)	N
1600	chr11	133096497	133096498	rs10791286	29155802	Huckins LM	2017-07-25	Mol Psychiatry	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Anorexia nervosa	2,158 European ancestry female cases, 15 ,485 European ancestry controls	1,299 European ancestry cases, 3,733 European ancestry controls	11q25	OPCML	rs10791286-A	0.33	9E-6		0.84		Illumina [up to 524954]	N
1600	chr11	133112762	133112763	rs4578395	26129866	Hu N	2015-06-30	Gut	Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.	Gastric cancer	2,350 East Asian ancestry cases, 2,708 East Asian ancestry controls	7,408  East Asian ancestry cases, 7,548  East Asian ancestry controls	11q25	OPCML	rs4578395-C	0.092	2E-6		1.19	[1.11-1.28]	Illumina [556896]	N
1600	chr11	133120936	133120937	rs2078454	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	11q25	NR	rs2078454-A	0.2094	6E-6		3.603	[NR] unit decrease	Illumina [1200000] (imputed)	N
1600	chr11	133154616	133154617	rs1941221	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	11q25	NR	rs1941221-T	NR	9E-6		0.8826	NR	Illumina [at least 560000] (imputed)	N
1601	chr11	133221693	133221694	rs73031356	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	11q25	NR	rs73031356-C	0.0287	4E-7	(dominant, female)	2.5400913	[1.77068061336693-3.64383245492658]	Affymetrix, Illumina [6131010] (imputed)	N
1601	chr11	133221927	133221928	rs11223444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q25		rs11223444-G	NR	8E-9		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1601	chr11	133221927	133221928	rs11223444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs11223444-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1601	chr11	133221927	133221928	rs11223444	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	11q25	OPCML	rs11223444-A	0.4476	3E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1601	chr11	133221986	133221987	rs10894670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs10894670-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1601	chr11	133241101	133241102	rs117065854	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs117065854-A	0.01394	2E-8	(AGT)	0.06537	NR unit increase	Illumina [1671387] (imputed)	N
1601	chr11	133256560	133256561	rs4245116	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	11q25	NR	rs4245116-T	NR	2E-6		0.03	[0.010-0.050] unit increase	Affymetrix, Illumina [2373958] (imputed)	N
1602	chr11	133312851	133312852	rs79916885	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	11q25	NR	rs79916885-?	NR	9E-6		3.3731	[1.06-5.68] unit decrease	Illumina [at least 560000] (imputed)	N
1602	chr11	133331017	133331018	rs149496015	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate variability traits (SDNN)	13,184 Hispanic/Latino individuals	7,073 European ancestry individuals, 2,908 African American individuals	11q25	OPCML	rs149496015-C	0.98	8E-7	(Hispanic)	0.194	[0.12-0.27] unit increase	Affymetrix, Illumina [17209740] (imputed)	N
1602	chr11	133376449	133376450	rs12788589	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	11q25	OPCML	rs12788589-C	0.25	2E-6		0.0274	[0.016-0.039] unit increase	Illumina [6380737] (imputed)	N
1602	chr11	133392293	133392294	rs7117082	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	11q25	LOC100128095, OPCML	rs7117082-?	0.21	8E-9		2.7926	[2.04-3.81]	Illumina [859311]	N
1602	chr11	133414329	133414331	rs145733429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	11q25		rs145733429-C	NR	5E-8		0.0672	[0.043-0.091] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1602	chr11	133423496	133423497	rs7121227	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	11q25	OPCML	rs7121227-?	NR	4E-6				Affymetrix, Illumina [1184972]	N
1603	chr11	133484253	133484254	rs4937802	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	11q25	intergenic	rs4937802-?	0.43	7E-6	(model 2)	0.161	NR unit increase	Illumina [628376]	N
1603	chr11	133484253	133484254	rs4937802	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	11q25	intergenic	rs4937802-?	0.43	6E-6	(women)	0.201	NR unit increase	Illumina [628376]	N
1603	chr11	133531998	133531999	rs10791303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q25		rs10791303-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1603	chr11	133540591	133540592	rs7116186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q25	NR	rs7116186-?	NR	3E-6		4.662	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1603	chr11	133548872	133548873	rs10750539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q25	Intergenic	rs10750539-A	0.3509	7E-11	(MTAG)	0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1603	chr11	133548872	133548873	rs10750539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs10750539-A	0.3517	1E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1603	chr11	133548872	133548873	rs10750539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q25	Intergenic	rs10750539-A	0.3517	6E-13	(MTAG)	0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1603	chr11	133561398	133561399	rs11223560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q25	Intergenic	rs11223560-A	0.5966	8E-9	(MTAG)	0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1604	chr11	133566984	133566985	rs4397868	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	11q25	NR	rs4397868-?	NR	3E-7		0.4	[0.25-0.55] years decrease	Illumina [315418]	N
1604	chr11	133584529	133584530	rs1079304	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	11q25	RP11-448P19.1	rs1079304-A	0.2464	9E-6		0.0319	[0.018-0.046] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1604	chr11	133587982	133587983	rs903817	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	11q25		rs903817-?	NR	7E-6		0.9665264	[0.952298976334137-0.980966360069098]	Illumina [up to 7827597] (imputed)	N
1604	chr11	133647593	133647594	rs2132489	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	11q25	NR	rs2132489-T	0.567	7E-10		0.0082326	[0.0056-0.0108] unit increase	NR [~ 9732723] (imputed)	N
1604	chr11	133657215	133657216	rs34790786	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	11q25	SPATA19	rs34790786-G	0.184	3E-6		2.3255813	[1.64-3.33]	Illumina [7759885] (imputed)	N
1604	chr11	133658167	133658168	rs12795042	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	11q25	NR	rs12795042-C	0.623	3E-8		0.008319009	[0.0054-0.0113] unit decrease	NR [~ 10000000] (imputed)	N
1604	chr11	133667673	133667674	rs7480395	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs7480395-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1604	chr11	133692367	133692368	rs78226262	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs78226262-A	0.01742	2E-8	(NPC2)	0.06316	NR unit increase	Illumina [1671387] (imputed)	N
1605	chr11	133702649	133702650	rs10791323	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	11q25	NR	rs10791323-?	NR	4E-6		0.0439	[0.025-0.063] unit increase	Illumina [at least 560000] (imputed)	N
1605	chr11	133709513	133709514	rs148405947	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	11q25	NR	rs148405947-?	NR	7E-6		0.455385	[0.26-0.65] unit increase	NR [13958389] (imputed)	N
1605	chr11	133709513	133709514	rs148405947	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	11q25	NR	rs148405947-?	NR	6E-6		0.406553	[0.23-0.58] unit decrease	NR [13958389] (imputed)	N
1605	chr11	133712681	133712682	rs2187449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs2187449-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1605	chr11	133712681	133712682	rs2187449	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs2187449-A	0.7667	4E-14		0.0156	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1605	chr11	133712681	133712682	rs2187449	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q25	NA	rs2187449-A	0.7667	4E-14		0.0156	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1605	chr11	133718881	133718882	rs11223600	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q25	NR	rs11223600-?	NR	2E-9		0.21625	[0.15-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1605	chr11	133718881	133718882	rs11223600	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	11q25	NR	rs11223600-?	NR	1E-7	(female)	0.30912	[0.19-0.42] unit decrease	Affymetrix [7794483] (imputed)	N
1605	chr11	133749243	133749244	rs10894757	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	11q25	NA	rs10894757-T		6E-10		0.0115376	[0.0079-0.0152] unit increase	Illumina [13288253] (imputed)	N
1605	chr11	133750954	133750955	rs142324371	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	11q25	SPATA19	rs142324371-?	NR	6E-9		0.0143178	[0.0095-0.0191] unit increase	Affymetrix [25921788] (imputed)	N
1605	chr11	133763229	133763230	rs1793681	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	11q25	RP11-259P6.2	rs1793681-A	0.89	5E-6		1.19	[0.68-1.7] g/day increase	Affymetrix [10353649] (imputed)	N
1605	chr11	133765366	133765367	rs329648	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	11q25	MIR4697	rs329648-T	0.351	1E-13		1.09	[1.07-1.12]	Illumina [11933700] (imputed)	N
1605	chr11	133765366	133765367	rs329648	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	11q25	MIR4697	rs329648-T	0.354	1E-11		1.105	[1.08-1.13]	Illumina [7893274] (imputed)	N
1605	chr11	133767621	133767622	rs329651	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q25	IGSF9B	rs329651-G	0.196058	2E-10		0.0110894	[0.0077-0.0145] unit decrease	Affymetrix [12370749]	N
1605	chr11	133767621	133767622	rs329651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs329651-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1605	chr11	133772903	133772904	rs117677995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs117677995-A	0.0535	2E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr11	133775442	133775443	rs10894762	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	11q25	IGSF9B	rs10894762-T	0.7723	3E-8		0.0067	[0.0043-0.0091] unit increase	Affymetrix [~ 7740000] (imputed)	N
1605	chr11	133776947	133776948	rs329674	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	11q25	LOC646543	rs329674-A	NR	1E-7	(Japanese)	1.2155114	[1.13140218066456-1.30587513221986]	Illumina [at least 6195093] (imputed)	N
1605	chr11	133783231	133783232	rs748919	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	11q25	IGSF9B	rs748919-T	0.79	3E-9		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1605	chr11	133787000	133787001	rs3802920	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	11q25	IGSF9B	rs3802920-T		7E-9		0.1012	[0.067-0.135] unit increase	Illumina [NR]	N
1605	chr11	133787000	133787001	rs3802920	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	11q25	IGSF9B	rs3802920-T	0.2054	6E-20		0.1073	[0.084-0.13] unit increase	NR [7784415] (imputed)	N
1605	chr11	133792643	133792644	rs34845616	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	11q25	IGSF9B	rs34845616-A	0.252	3E-8		0.1411	[0.091-0.191] kg increase	Affymetrix [at least 17000000] (imputed)	N
1605	chr11	133795518	133795519	rs11825659	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	11q25	intergenic	rs11825659-G	NR	1E-6	(AA)	0.484	unit decrease	Illumina [at least 5086170] (imputed)	N
1605	chr11	133797580	133797581	rs167915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	11q25		rs167915-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1605	chr11	133797580	133797581	rs167915	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q25	NR	rs167915-A	NR	1E-9		6.066	z score increase	Affymetrix [10847151] (imputed)	N
1605	chr11	133797580	133797581	rs167915	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	11q25	IGSF9B	rs167915-A	0.352179	4E-9		5.869	unit increase	NR [10847151] (imputed)	N
1605	chr11	133799131	133799132	rs329672	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q25	NR	rs329672-T	NR	1E-9		6.109	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1605	chr11	133800218	133800219	rs1682859	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	IGSF9B	rs1682859-C	0.48	1E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1605	chr11	133808037	133808038	rs73034263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	11q25	Intergenic	rs73034263-C	0.7971	4E-18	(MTAG)	0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr11	133808037	133808038	rs73034263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	11q25	Intergenic	rs73034263-C	0.7971	1E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr11	133808037	133808038	rs73034263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	11q25	Intergenic	rs73034263-C	0.7971	7E-16	(MTAG)	0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1605	chr11	133808037	133808038	rs73034263	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	11q25	NR	rs73034263-C	NR	2E-8		5.594	z score increase	Affymetrix [10847151] (imputed)	N
1605	chr11	133808037	133808038	rs73034263	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	11q25	IGSF9B	rs73034263-C	0.194034	3E-8		5.56	z score increase	NR [10847151] (imputed)	N
1605	chr11	133811071	133811072	rs12804787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	11q25		rs12804787-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1605	chr11	133813167	133813168	rs329645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs329645-T	0.7288	1E-9	(conditional-joint)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr11	133814712	133814713	rs4937860	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	11q25	NR	rs4937860-A	0.0874751	3E-8		0.06162337	[0.04-0.083] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1605	chr11	133814712	133814713	rs4937860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	11q25	Intergenic	rs4937860-A	0.8939	2E-8		0.0259	[0.017-0.035] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1605	chr11	133817332	133817333	rs502834	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	11q25	NR	rs502834-?	NR	7E-7				Illumina [up to 5582932] (imputed)	N
1605	chr11	133822132	133822133	rs73034295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs73034295-A	0.2016	2E-8		0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	11q25	NR	rs75059851-?		4E-10				NR [8377093]	N
1605	chr11	133822568	133822569	rs75059851	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	11q25	IGSF9B	rs75059851-?		6E-10				NR [6786993] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q25	IGSF9B	rs75059851-A	NR	2E-11	(EA)	1.0956	[1.07-1.12]	Illumina [6627481] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	11q25	IGSF9B	rs75059851-A	NR	1E-12		1.098	[1.07-1.12]	Illumina [6627481] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q25	IGSF9B	rs75059851-A	NR	9E-13		1.098	[1.07-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs75059851-A	NR	7E-12		1.1	[NR]	Illumina [7158791] (imputed)	N
1605	chr11	133822568	133822569	rs75059851	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	11q25	IGSF9B	rs75059851-A	0.797	4E-11		1.091	[1.063-1.119]	Affymetrix, Illumina [9005918] (imputed)	N
1606	chr11	133824538	133824539	rs694424	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	11q25	IGSF9B	rs694424-G	0.12	5E-7	(trajectory)	5.01	z-score decrease	Illumina [866099] (imputed)	N
1606	chr11	133825854	133825855	rs12273435	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	11q25		rs12273435-G	0.798	1E-11		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1606	chr11	133825854	133825855	rs12273435	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs12273435-A	0.207	5E-14		0.0132	[0.0099-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1606	chr11	133825854	133825855	rs12273435	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	11q25	Intergenic	rs12273435-A	0.207	6E-17	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1606	chr11	133825854	133825855	rs12273435	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	11q25	Intergenic	rs12273435-A	0.2093	2E-12	(MTAG)	0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1606	chr11	133826908	133826909	rs12291823	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	11q25	NR	rs12291823-?	NR	1E-7		5.283	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1606	chr11	133827732	133827733	rs3802924	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	11q25	NR	rs3802924-?	NR	2E-12		1.09428	[1.07-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
1606	chr11	133829643	133829644	rs3758927	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	11q25	NR	rs3758927-C	NR	2E-8		5.61	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1606	chr11	133829705	133829706	rs561561	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	11q25	IGSF9B	rs561561-?	0.88	3E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1606	chr11	133836300	133836301	rs669257	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	11q25	NR	rs669257-A	0.199	6E-10		0.00844289	[0.0058-0.0111] unit decrease	NR [9732723] (imputed)	N
1606	chr11	133841033	133841034	rs11223651	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	11q25	IGSF9B	rs11223651-?		2E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1606	chr11	133842972	133842973	rs11223656	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	11q25	NR	rs11223656-?		1E-9				NR [8377093]	N
1606	chr11	133844023	133844024	rs57204268	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	11q25		rs57204268-A	0.8497	1E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1606	chr11	133852683	133852684	rs4936215	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4936215-?	NR	4E-10				NR [2625067]	N
1606	chr11	133852683	133852684	rs4936215	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA			rs4936215-?	NR	1E-8		0.0172	NR unit decrease	NR [4484088] (imputed)	N
1606	chr11	133852683	133852684	rs4936215	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		IGSF9B	rs4936215-?	NR	5E-14		1.096	[1.07-1.12]	Illumina [8000000] (imputed)	N
1606	chr11	133853007	133853008	rs4936216	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	11q25	NR	rs4936216-T	0.2177	1E-10		0.08737344	[0.061-0.114] unit decrease	NR [NR]	N
1606	chr11	133853007	133853008	rs4936216	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	11q25	IGSF9B	rs4936216-?	NR	2E-10		0.015728297	[0.011-0.021] unit increase	NR [7306098]	N
1606	chr11	133864278	133864279	rs4937861	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	11q25	NR	rs4937861-?	NR	2E-7		0.09827	NR	Illumina [802276]	N
1606	chr11	133874711	133874712	rs586313	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	11q25	NR	rs586313-C		7E-6		0.0845	[0.048-0.121] SD units increase	NR [10700000] (imputed)	N
1606	chr11	133876803	133876804	rs517437	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	11q25	NR	rs517437-?	NR	5E-7		0.13857	[0.084-0.193] unit increase	NR [13958389] (imputed)	N
1606	chr11	133884136	133884137	rs619091	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	11q25	LOC100128239	rs619091-T	NR	6E-9		1.0559661	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1606	chr11	133893927	133893928	rs78103586	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	11q25	LOC105369408	rs78103586-?	NR	2E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1606	chr11	133921939	133921939	rs56160206	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	11q25	NR	rs56160206-?	NR	8E-8		0.110906504	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1606	chr11	133926703	133926704	rs1784391	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	NCAPD3	rs1784391-?	NR	9E-6	(pantothenic acid)	0.23305069	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1606	chr11	133930784	133930785	rs80088979	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs80088979-G	0.06969	2E-8	(C4B)	0.2266	NR unit increase	Illumina [1671387] (imputed)	N
1606	chr11	133944694	133944695	rs77533619	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs77533619-A	0.01045	5E-9	(EMILIN2)	0.1345	NR unit increase	Illumina [1671387] (imputed)	N
1607	chr11	133981074	133981075	rs1267813	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs1267813-G	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1607	chr11	134006963	134006964	rs7947419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	11q25	JAM3	rs7947419-T	0.059809	1E-10		0.030143458	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr11	134011912	134011913	rs470809	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	11q25		rs470809-T	0.32	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1607	chr11	134011912	134011913	rs470809	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	11q25	NR	rs470809-T	0.3205	4E-10				NR [9056863] (imputed)	N
1607	chr11	134018744	134018745	rs610829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	11q25		rs610829-A	NR	1E-8		0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1607	chr11	134021858	134021859	rs655627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAM3	5,358 Icelandic ancestry individuals	NA	11q25		rs655627-G	0.4328	3E-16		0.144746	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1607	chr11	134021858	134021859	rs655627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q25	JAM3	rs655627-A	0.56578125	4E-14	(JAM3, 2998_53_2)	0.18351768	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1607	chr11	134031190	134031191	rs61909689	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	11q25		rs61909689-?	NR	7E-6		2.14962	[1.82-2.48]	NR [663102]	N
1607	chr11	134038537	134038538	rs73731	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	11q25		rs73731-T	0.25	3E-13		7.28	z score increase	Affymetrix [9061022] (imputed)	N
1607	chr11	134038948	134038949	rs7927108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs7927108-T	0.0122	2E-9	(CTSD)	2.833	NR unit increase	Illumina [1671387] (imputed)	N
1607	chr11	134038948	134038949	rs7927108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	11q25	NR	rs7927108-T	0.0122	2E-10	(NPC2)	0.08398	NR unit increase	Illumina [1671387] (imputed)	N
1607	chr11	134056875	134056876	rs10791348	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	11q25		rs10791348-C	0.25	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
1607	chr11	134080740	134080741	rs7108464	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	11q25	NR	rs7108464-A	0.1428	9E-9				NR [9056863] (imputed)	N
1608	chr11	134088681	134088682	rs1031381	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	11q25	NCAPD3	rs1031381-?	NR	6E-6	(F3)			Affymetrix [70897]	N
1608	chr11	134100498	134100499	rs11223731	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	11q25	VPS26B, NCAPD3	rs11223731-A	0.77	2E-6	(DWRT-dr)	0.1101	[0.065-0.155] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1608	chr11	134103629	134103629	rs11428242	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	11q25	VPS26B	rs11428242-C	0.276363	4E-8		0.012459	[0.0079-0.017] unit decrease	NR [16516521] (imputed)	N
1608	chr11	134122249	134122250	rs570113	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THYN1	5,366 Icelandic ancestry individuals	NA	11q25		rs570113-T	0.309	5E-13		0.147151	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1608	chr11	134128922	134128923	rs113488591	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	11q25	ACAD8	rs113488591-C	0.985707	1E-23	(isobutyrylcarnitine (C4))	0.974	[0.78-1.16] unit decrease	Illumina [13039987] (imputed)	N
1608	chr11	134139779	134139780	rs478881	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	ACAD8	rs478881-A	0.141	7E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1608	chr11	134139779	134139780	rs478881	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	11q25	ACAD8	rs478881-A	0.141	7E-6	(Cystathionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1608	chr11	134143419	134143420	rs486119	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	11q25	THYN1	rs486119-A	0.693125	6E-8	(THYN1, 12424_107_3)	0.14397624	[0.092-0.196] unit decrease	Illumina [> 1000000] (imputed)	N
1609	chr11	134247841	134247842	rs10894804	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	11q25	B3GAT1, LOC89944	rs10894804-A	0.53	5E-6	(CERAD-dr)	0.2826	[0.16-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1609	chr11	134263727	134263728	rs79256507	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	11q25	B3GAT1	rs79256507-A	0.15	8E-19		8.86	z-score increase	Affymetrix [4311822] (imputed)	N
1609	chr11	134263733	134263734	rs80021729	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	11q25	B3GAT1	rs80021729-A	0.855925	1E-26		0.00349351	[0.0028-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1609	chr11	134264141	134264142	rs58475265	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	11q25	NA	rs58475265-C	0.1657	8E-9	(Female)	1.059322	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1609	chr11	134264505	134264506	rs75373472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	11q25		rs75373472-G	NR	2E-25		0.0317	[0.026-0.038] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1609	chr11	134265966	134265967	rs7928758	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Alcohol consumption (max-drinks)	272 Han Chinese ancestry individuals	NA	11q25	NR	rs7928758-?		3E-6		0.701	unit decrease	Illumina [247725]	N
1609	chr11	134265966	134265967	rs7928758	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	11q25	B3GAT1	rs7928758-C	0.12	2E-8	(DG13)	0.22847031	[0.15-0.31] (zscore) decrease	Illumina [NR]	N
1609	chr11	134266371	134266372	rs878987	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	11q25	NR	rs878987-G	NR	4E-11		1.066	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1609	chr11	134266371	134266372	rs878987	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	11q25	B3GAT1	rs878987-G	0.15	5E-8		1.07	[1.04-1.09]	Illumina [20370935] (imputed)	N
1609	chr11	134292818	134292819	rs56129946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	11q25	NR	rs56129946-T	NR	1E-16		0.0301	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1609	chr11	134296383	134296384	rs893949	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs893949-C	NR	5E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1609	chr11	134308160	134308161	rs11223807	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	11q25	LOC283177	rs11223807-T	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1609	chr11	134316221	134316222	rs10894818	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	11q25	NR	rs10894818-A	0.472	3E-6	(Females)	0.235238	[0.14-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
1610	chr11	134412738	134412739	rs7934698	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	11q25	intergenic	rs7934698-A	NR	2E-6		0.2774	NR unit increase	NR [560698] (imputed)	N
1610	chr11	134445198	134445199	rs35327266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs35327266-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1610	chr11	134477853	134477854	rs11825064	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	11q25	OTTHUMG00000165125	rs11825064-C	NR	2E-6		0.64	[0.39-0.89] unit increase	Affymetrix, Illumina [2354422] (imputed)	N
1611	chr11	134482465	134482466	rs1944866	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q25	intergenic	rs1944866-?	0.871	2E-6			[NR]	Affymetrix, Illumina [152234]	N
1611	chr11	134503874	134503875	rs3019644	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	11q25		rs3019644-C	0.685	7E-6		0.055	[0.031-0.079] unit decrease	Affymetrix [6030650] (imputed)	N
1611	chr11	134515898	134515899	rs61910767	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	11q25	NR	rs61910767-T	0.1654	7E-12		0.022871979	[0.016-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1611	chr11	134518867	134518868	rs12806052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	11q25		rs12806052-T	NR	1E-11		0.0213	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1611	chr11	134522596	134522597	rs35025195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs35025195-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1611	chr11	134524448	134524449	rs11603151	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	11q25	NR	rs11603151-A	NR	7E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1611	chr11	134573809	134573810	rs11825685	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	11q25	NR	rs11825685-C	0.889723712633929	9E-6	(IGP36)	0.227	[0.13-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1611	chr11	134580590	134580591	rs4937935	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	11q25	B3GAT1	rs4937935-T	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1611	chr11	134580590	134580591	rs4937935	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	11q25	B3GAT1	rs4937935-T	NR	3E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1611	chr11	134589354	134589355	rs61909165	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		11q25	AP003062.1	rs61909165-T	0.826017	2E-11		0.012264	[0.0087-0.0158] unit decrease	Affymetrix [12370749]	N
1611	chr11	134600906	134600907	rs11223971	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	11q25	Intergenic	rs11223971-C		9E-8		0.0515	[NR] unit increase	Illumina [24111857] (imputed)	N
1611	chr11	134601011	134601012	rs12364470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	11q25	NR	rs12364470-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1611	chr11	134601011	134601012	rs12364470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	11q25		rs12364470-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1611	chr11	134601011	134601012	rs12364470	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	11q25	NA	rs12364470-T	0.8535	2E-17		0.0187	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1611	chr11	134601011	134601012	rs12364470	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	11q25	NA	rs12364470-T	0.8535	2E-17		0.0187	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1612	chr11	134611389	134611390	rs111258054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	11q25		rs111258054-T	NR	3E-10		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1612	chr11	134626886	134626887	rs11223996	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		11q25	intergenic	rs11223996-?	0.143	7E-7			[NR]	Affymetrix, Illumina [152234]	N
1612	chr11	134696041	134696042	rs4936253	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	541 Japanese ancestry women	NA	11q25	intergenic	rs4936253-A	0.26	8E-6		0.203	[0.11-0.29] unit decrease	Illumina [545605]	N
1612	chr11	134725875	134725876	rs11224038	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	LOC89944	rs11224038-?	NR	1E-6	(betaine)	1.2106777	[0.72-1.7] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1612	chr11	134738269	134738270	rs906628	24172245	Haga S	2013-10-31	J Hum Genet	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (mandibular third molar)	80 East Asian ancestry mandibular cases, 69 East Asian ancestry maxillary cases, 338 East Asian ancestry controls	NA	11q25	intergenic	rs906628-G		8E-6		4.35	[2.28-8.30]	Illumina [532105]	N
1612	chr11	134740772	134740773	rs11224052	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	11q25	intergenic	rs11224052-T	0.219	9E-7		2.319	[NR]	Affymetrix [633420]	N
1613	chr11	134752033	134752034	rs10894895	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	11q25		rs10894895-C	NR	9E-6	(GLM)	0.1931	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1613	chr11	134757881	134757882	rs7108263	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	11q25	NR	rs7108263-?	NR	4E-6				Illumina [1735619]	N
1613	chr11	134763070	134763071	rs11224069	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	11q25	NR	rs11224069-?	NR	8E-6		0.0748	[0.042-0.108] unit increase	Illumina [at least 560000] (imputed)	N
1613	chr11	134769425	134769426	rs1478747	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	11q25		rs1478747-A	0.226	8E-6		2.509	[1.6755-3.7571]	Illumina [7778465] (imputed)	N
1613	chr11	134773378	134773378	rs151087896	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	11q25	B3GAT1	rs151087896-T	NR	1E-6		1.57	[NR] unit increase	Affymetrix [NR] (imputed)	N
1613	chr11	134775316	134775317	rs1154905	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	11q25		rs1154905-A	NR	2E-6		0.009	[0.0051-0.0129] unit decrease	NR [7831927]	N
1614	chr11	134892790	134892791	rs7101520	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	11q25	LOC89944	rs7101520-?	NR	4E-6	(lysine)	3.9668021	[2.29-5.65] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1614	chr11	134916015	134916016	rs55971108	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	11q25	Intergenic	rs55971108-?		7E-6		1.3292569	[1.18-1.50]	Illumina [9389922] (imputed)	N
585	chr12	73875	73876	rs374336126	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	12p13.33	NR	rs374336126-T	NR	8E-6		1.812	[1.40-2.35]	Illumina [13976150] (imputed)	N
586	chr12	152580	152581	rs183751285	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	12p13.33	IQSEC3	rs183751285-A	0.723	4E-6		0.537	[0.31-0.76] unit increase	Illumina [6007542] (imputed)	N
586	chr12	188284	188285	rs2368831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.33		rs2368831-T	0.5736	2E-10		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
586	chr12	188284	188285	rs2368831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.33	Intergenic	rs2368831-T	0.5736	5E-10	(MTAG)	0.0083	[0.0058-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr12	219987	219988	rs2011738	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	12p13.33	IQSEC3	rs2011738-G	NR	6E-6	(EA)	1.34	[0.71-1.97] unit increase	Affymetrix [~ 2300000] (imputed)	N
587	chr12	294797	294798	rs502783	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	IQSEC3, SLC6A12	rs502783-G	0.655934	8E-23	(betaine)	0.235	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
587	chr12	308076	308077	rs74057609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.33	NR	rs74057609-A	0.01045	7E-9	(ME1)	0.1203	NR unit decrease	Illumina [1671387] (imputed)	N
587	chr12	313838	313839	rs188610	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12p13.33	SLC6A12, IQSEC3, SLC6A13	rs188610-A	0.003	1E-6		11.49	[3.29-40.16]	Illumina [1556551]	N
587	chr12	320919	320920	rs499368	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p13.33	SLC6A12	rs499368-A	0.53	8E-13	(betaine)	0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
587	chr12	320919	320920	rs499368	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	12p13.33	SLC6A13, SLC6A12	rs499368-A	0.51	2E-10	(betaine)	0.36	[0.25-0.46] unit decrease	Affymetrix [909508] (imputed)	N
587	chr12	327420	327421	rs495360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.33		rs495360-?	NR	2E-14				NR [~ 8900000] (imputed)	N
587	chr12	335921	335922	rs555044	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs555044-C	0.743123	2E-23	(deoxycarnitine)	0.258	[0.21-0.31] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	335921	335922	rs555044	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	12p13.33	SLC6A13	rs555044-A	0.43	1E-12	(Deoxycarnitine)	0.07	[NR] unit increase	Affymetrix [2341704] (imputed)	N
587	chr12	339319	339320	rs7132236	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	12p13.33	NR	rs7132236-G		5E-6		0.2414	[0.14-0.35] SD units decrease	NR [10700000] (imputed)	N
587	chr12	343631	343632	rs11062070	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12p13.33	SLC6A13	rs11062070-?	NR	3E-9		0.02377	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
587	chr12	348505	348506	rs67523949	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	12p13.33	SLC6A13	rs67523949-T	0.552729	2E-8		0.03473	[0.024-0.046] unit increase	Illumina [24961484] (imputed)	N
587	chr12	348784	348785	rs11062102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p13.33		rs11062102-C	NR	1E-46		0.0244	[0.021-0.028] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
587	chr12	348784	348785	rs11062102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	12p13.33		rs11062102-C	0.325382	2E-8		0.0173873	[0.011-0.023] unit increase	Illumina [13478778] (imputed)	N
587	chr12	348784	348785	rs11062102	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs11062102-T	0.573545	2E-67	(deoxycarnitine)	0.416	[0.37-0.46] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	348784	348785	rs11062102	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12p13.33	SLC6A13	rs11062102-C	0.4377	4E-21		9.442	NR z score decrease	Illumina [26237160] (imputed)	N
587	chr12	348784	348785	rs11062102	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	12p13.33	SLC6A13	rs11062102-T	0.36	1E-17	(3-aminoisobutyrate)	0.1755	[NR] unit decrease	Affymetrix [620456]	N
587	chr12	348875	348876	rs10774020	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs10774020-T	0.56974	3E-57	(1-methylimidazoleacetate)	0.348	[0.3-0.39] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	348875	348876	rs10774020	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12p13.33	SLC6A13	rs10774020-T	0.408	7E-21		0.0037	[0.0031-0.0043] unit increase	Affymetrix [NR] (imputed)	N
587	chr12	348875	348876	rs10774020	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	12p13.33	SLC6A13	rs10774020-C	0.378	2E-9		0.468	[0.28-0.65] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
587	chr12	349297	349298	rs10774021	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p13.33	NR	rs10774021-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
587	chr12	349297	349298	rs10774021	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	12p13.33	SLC6A13	rs10774021-T	NR	1E-12		0.0067	[0.0049-0.0085] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr12	349297	349298	rs10774021	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	12p13.33	SLC6A13	rs10774021-T	0.65	5E-12	(EA)	0.0063	[0.0045-0.0081] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr12	349297	349298	rs10774021	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	12p13.33	SLC6A13, JARID1A, SLC6A12	rs10774021-C	0.36	1E-9	(eGFRcrea)	1.05	[0.006-0.010] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr12	351322	351323	rs515639	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.33	NR	rs515639-T	NR	8E-13		0.0257	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
587	chr12	351322	351323	rs515639	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.33	NR	rs515639-T	NR	1E-14		0.0277	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr12	351466	351467	rs11613331	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	3-hydroxybutyrate + 3-aminoisobutyrate levels	996 European ancestry individuals	NA	12p13.33		rs11613331-G	0.467	3E-12		0.32098067	unit decrease	Illumina [283704]	N
587	chr12	351466	351467	rs11613331	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs11613331-G	0.674605	5E-17	(pyroglutamine*)	0.198	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	351466	351467	rs11613331	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs11613331-G	0.674605	4E-11	(3-aminoisobutyrate)	0.159	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	351466	351467	rs11613331	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p13.33	SLC6A13	rs11613331-G	0.674605	1E-20	(imidazole lactate)	0.228	[0.18-0.28] unit decrease	Illumina [13039987] (imputed)	N
587	chr12	351466	351467	rs11613331	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p13.33	SLC6A13	rs11613331-G	0.46	5E-15	(3-aminoisobutyrate)	0.446	[0.33-0.56] unit decrease	Illumina [7750367] (imputed)	N
587	chr12	351466	351467	rs11613331	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p13.33	SLC6A13	rs11613331-A	0.55	2E-25	(pyroglutamine)	0.037	[0.029-0.045] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
587	chr12	351466	351467	rs11613331	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	SLC6A12	rs11613331-?	NR	2E-12	(beta aminoisobutyric acid)	0.23065287	[0.17-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
587	chr12	355841	355842	rs7969761	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	12p13.33	SLC6A13	rs7969761-T	0.508	4E-9		0.311	[0.21-0.41] unit decrease	Affymetrix [NR] (imputed)	N
587	chr12	355841	355842	rs7969761	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	12p13.33	SLC6A13	rs7969761-T	0.56	1E-27	(betaine/pyroglutamine)	0.045	[0.037-0.053] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
587	chr12	361995	361996	rs3782860	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p13.33	SLC6A13	rs3782860-T	0.543	6E-11		1.0253152		Affymetrix [11880941] (imputed)	N
587	chr12	364738	364739	rs11062167	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12p13.33	SLC6A13	rs11062167-A	0.4834	1E-37		0.0039	[0.0033-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
587	chr12	364738	364739	rs11062167	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12p13.33	SLC6A13	rs11062167-A	0.5303	6E-36		0.0042	[0.0036-0.0048] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
587	chr12	364738	364739	rs11062167	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		12p13.33	SLC6A13	rs11062167-A	NR	1E-8		0.0055	[0.0037-0.0073] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
587	chr12	365016	365016	rs777622673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12p13.33		rs777622673-ACCT	0.464657	3E-12		0.0274123	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
587	chr12	377206	377207	rs10848650	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.33	SLC6A13	rs10848650-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
587	chr12	383841	383842	rs495316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p13.33	RP11-283I3.6	rs495316-G	NR	1E-8		0.0184999	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
587	chr12	383841	383842	rs495316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p13.33	RP11-283I3.6	rs495316-G	NR	3E-8		0.0179699	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
588	chr12	409104	409104	rs200090273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12p13.33		rs200090273-CAAAG	NR	3E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
588	chr12	418915	418916	rs4980877	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12p13.33	KDM5A	rs4980877-C		3E-8		0.162	unit decrease	Affymetrix [at least 2696785] (imputed)	N
588	chr12	475578	475579	rs4140962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p13.33	KDM5A	rs4140962-A	NR	4E-8		0.0157433	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
588	chr12	475578	475579	rs4140962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p13.33	KDM5A	rs4140962-A	NR	6E-9		0.0167493	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
588	chr12	475578	475579	rs4140962	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CCDC77	rs4140962-?	NR	4E-10	(beta aminoisobutyric acid)	0.21354419	[0.15-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
588	chr12	485790	485791	rs7977462	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p13.33	intergenic	rs7977462-C	0.753	9E-7	(EA, initial)	0.435	[0.26-0.61] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
588	chr12	485790	485791	rs7977462	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p13.33	intergenic	rs7977462-C	0.753	1E-7		0.264	[0.17-0.36] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
588	chr12	508858	508859	rs2369280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p13.33		rs2369280-T	NR	1E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
588	chr12	508858	508859	rs2369280	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.33	NR	rs2369280-T	0.736634	3E-8		0.00541923	[0.0036-0.0073] unit increase	Affymetrix [16582909] (imputed)	N
588	chr12	508858	508859	rs2369280	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.33	NR	rs2369280-T	0.736634	4E-7		0.00530633	[0.0032-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
588	chr12	524060	524061	rs61908460	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	12p13.33	CCDC77	rs61908460-C	0.925	7E-6		0.5753	[0.32-0.83] unit increase	Illumina [at least 4683137] (imputed)	N
589	chr12	527215	527216	rs143615510	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	12p13.33	CCDC77	rs143615510-?	NR	5E-7	(boys)	3.6	[NR] unit increase	Illumina [774433] (imputed)	N
589	chr12	549669	549670	rs546738875	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12p13.33	CCDC77	rs546738875-G	0.00319008040036295	2E-10		0.3902	[0.27-0.51] SD increase	Illumina [22400000] (imputed)	N
589	chr12	551549	551550	rs1048466	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12p13.33	CCDC77	rs1048466-G	0.72	8E-8		1.22	[1.14-1.32]	Affymetrix [~ 2000000] (imputed)	N
589	chr12	559819	559820	rs576083050	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	12p13.33	CCDC77	rs576083050-T	3.5E-4	3E-8		2.34	[1.62-3.05]	NR [10849711] (imputed)	N
589	chr12	569944	569945	rs12825673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	12p13.33		rs12825673-A	0.312754	4E-36		0.0528068	[0.045-0.061] unit increase	Illumina [13474352] (imputed)	N
589	chr12	569944	569945	rs12825673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p13.33	B4GALNT3	rs12825673-G	NR	2E-11		0.0212387	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
589	chr12	569947	569948	rs12424113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.33		rs12424113-T	0.588909	9E-17		0.0171246	[0.013-0.021] unit increase	Illumina [13479295] (imputed)	N
589	chr12	569947	569948	rs12424113	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.33	B4GALNT3	rs12424113-?	NR	3E-14		0.022163762	[0.016-0.028] unit increase	Illumina [27896057] (imputed)	N
589	chr12	570839	570840	rs7966590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p13.33		rs7966590-A	NR	5E-152		0.0545	[0.05-0.059] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
589	chr12	570839	570840	rs7966590	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12p13.33	B4GALNT3	rs7966590-G	0.416591	3E-162		0.00626099	[0.0058-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
589	chr12	570839	570840	rs7966590	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12p13.33	B4GALNT3	rs7966590-?		3E-42		0.0586	[0.05-0.067] unit decrease	Illumina [31500000] (imputed)	N
589	chr12	570839	570840	rs7966590	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12p13.33	B4GALNT3	rs7966590-A	0.55002468887728	6E-14		0.0386	[0.028-0.049] SD increase	Illumina [22400000] (imputed)	N
589	chr12	570839	570840	rs7966590	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	12p13.33	B4GALNT3	rs7966590-?	NR	5E-33		0.05703	[0.048-0.066] unit increase novel	Illumina [6108953] (imputed)	N
589	chr12	570946	570947	rs7955258	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12p13.33	B4GALNT3	rs7955258-G	0.58	2E-119		23.2	z-score increase	Affymetrix [4311822] (imputed)	N
589	chr12	570946	570947	rs7955258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p13.33	NR	rs7955258-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
589	chr12	570946	570947	rs7955258	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	12p13.33	B4GALNT3	rs7955258-A	0.445	1E-14		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
589	chr12	573321	573322	rs73046031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12p13.33	NR	rs73046031-G	NR	6E-19		0.0274	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
589	chr12	576036	576037	rs34716573	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p13.33	B4GALNT3	rs34716573-C	0.3504	9E-8		0.008737	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
589	chr12	576036	576037	rs34716573	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p13.33	B4GALNT3	rs34716573-C	0.3504	2E-12	(females)	0.0173	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
589	chr12	576036	576037	rs34716573	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p13.33	B4GALNT3	rs34716573-C	0.3504	5E-11	(females)	0.01628	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
589	chr12	576036	576037	rs34716573	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p13.33	B4GALNT3	rs34716573-C	0.3504	1E-7		0.009317	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
589	chr12	576983	576984	rs11612228	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p13.33	B4GALNT3	rs11612228-T	0.3599	3E-8	(EA)	0.0228	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr12	576983	576984	rs11612228	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p13.33	B4GALNT3	rs11612228-T	0.3599	1E-7	(EA,men)	0.031	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr12	576983	576984	rs11612228	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12p13.33	B4GALNT3	rs11612228-T	0.378	7E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
589	chr12	577236	577237	rs7137546	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.33	B4GALNT3	rs7137546-A	0.5751	1E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
589	chr12	578348	578349	rs4980826	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Dorea phocaeense abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.33		rs4980826-A	0.370252	4E-8		0.0467777	[0.03-0.063] unit increase	Illumina [7980478] (imputed)	N
589	chr12	578348	578349	rs4980826	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CHKCI006 sp900018345 abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.33		rs4980826-A	0.370252	5E-8		0.0529093	[0.034-0.072] unit increase	Illumina [7980478] (imputed)	N
589	chr12	580771	580772	rs12811171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.33		rs12811171-?	NR	5E-65				NR [~ 8900000] (imputed)	N
589	chr12	580771	580772	rs12811171	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p13.33	B4GALNT3	rs12811171-T	0.3516	4E-8		0.0367	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr12	584070	584070	rs34220697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p13.33	B4GALNT3	rs34220697-G	NR	8E-10		0.0190791	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
589	chr12	585826	585827	rs7311655	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Merdibacter massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.33		rs7311655-T	0.448122	1E-8		0.0525433	[0.035-0.071] unit increase	Illumina [7980478] (imputed)	N
589	chr12	588603	588604	rs6489548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p13.33	B4GALNT3	rs6489548-A	NR	4E-14		0.0239153	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
589	chr12	588603	588604	rs6489548	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.33	B4GALNT3	rs6489548-?	NR	5E-16		0.025734166	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
589	chr12	588603	588604	rs6489548	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs6489548-?	NR	4E-39		0.0271285	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
589	chr12	588603	588604	rs6489548	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	B4GALNT3	rs6489548-A	0.404516	5E-7	(women)	0.0238855	[0.015-0.033] unit increase	NR [17166351] (imputed)	N
589	chr12	588603	588604	rs6489548	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	B4GALNT3	rs6489548-A	0.404082	2E-12		0.0239999	[0.017-0.031] unit increase	NR [17166351] (imputed)	N
589	chr12	588603	588604	rs6489548	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	B4GALNT3	rs6489548-A	0.403585	8E-6	(men)	0.0243535	[0.014-0.035] unit increase	NR [17166351] (imputed)	N
589	chr12	588943	588944	rs7294354	34975738	Winsvold BS	2021-12-17	Front Neurol	Genome-Wide Association Study of 2,093 Cases With Idiopathic Polyneuropathy and 445,256 Controls Identifies First Susceptibility Loci.	Idiopathic polyneuropathy	1,147 European ancestry cases, 62,204 European ancestry controls	946 European ancestry cases, 383,052 European ancestry controls	12p13.33		rs7294354-T	0.428	5E-8		1.19	[1.12-1.27]	Illumina [13629169] (imputed)	N
589	chr12	589872	589872	rs745680717	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs745680717-?	NR	9E-40		0.0275645	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
589	chr12	590258	590259	rs215223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCN3	5,351 Icelandic ancestry individuals	NA	12p13.33		rs215223-A	0.4221	2E-13		0.133991	[0.098-0.17] unit decrease	Illumina [7506463] (imputed)	N
589	chr12	590258	590259	rs215223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.33		rs215223-A	NR	3E-49		0.0199	[0.017-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
589	chr12	590448	590449	rs215224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.33		rs215224-?	NR	9E-40				NR [~ 8900000] (imputed)	N
589	chr12	590544	590545	rs215225	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p13.33	NR	rs215225-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
589	chr12	591177	591178	rs7138520	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides A plebeius A abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.33		rs7138520-G	0.493439	3E-8		0.104005	[0.067-0.141] unit increase	Illumina [7980478] (imputed)	N
589	chr12	591177	591178	rs7138520	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides A abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.33		rs7138520-G	0.493439	4E-8		0.108739	[0.07-0.148] unit increase	Illumina [7980478] (imputed)	N
589	chr12	591299	591300	rs215226	31170332	Zheng J	2019-08-02	J Bone Miner Res	Mendelian Randomization Analysis Reveals a Causal Influence of Circulating Sclerostin Levels on Bone Mineral Density and Fractures.	Serum sclerostin levels	10,584 European ancestry individuals	NA	12p13.33	B4GALNT3	rs215226-A	0.597	5E-49		0.205	[0.18-0.23] NR increase	NR [5245208] (imputed)	N
589	chr12	591299	591300	rs215226	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	B4GALNT3	rs215226-A	0.59844	3E-39		0.0247807	[0.021-0.028] unit decrease	NR [13737936] (imputed)	N
589	chr12	592087	592088	rs10849082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p13.33	B4GALNT3	rs10849082-C	NR	1E-8		0.0177445	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
589	chr12	592523	592524	rs215227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p13.33	B4GALNT3	rs215227-A	NR	2E-9		0.0216999	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
589	chr12	618789	618790	rs34019521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12p13.33		rs34019521-C	NR	9E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
589	chr12	621935	621942	rs143741106	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.33	B4GALNT3	rs143741106-C	0.171	1E-12	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
589	chr12	623128	623129	rs35882350	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p13.33	NR	rs35882350-A	0.738696	2E-18		0.0191123	[0.015-0.023] unit decrease	Affymetrix [15000001]	N
589	chr12	623128	623129	rs35882350	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals			rs35882350-?	NR	1E-13		7.4	z-score increase increase	Affymetrix, Illumina [NR] (imputed)	N
589	chr12	623128	623129	rs35882350	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals			rs35882350-?	NR	3E-16		8.2	z-score increase increase	Affymetrix, Illumina [NR] (imputed)	N
589	chr12	623128	623129	rs35882350	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12p13.33	B4GALNT3	rs35882350-A	0.738935	5E-9		0.0138882	[0.0092-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
589	chr12	623128	623129	rs35882350	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12p13.33	B4GALNT3	rs35882350-A	0.738947	1E-8		0.0134361	[0.0088-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
589	chr12	623128	623129	rs35882350	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12p13.33	B4GALNT3	rs35882350-?	NR	2E-14		0.0223	[0.017-0.027] unit increase	Affymetrix [5701386] (imputed)	N
589	chr12	623424	623425	rs60309576	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12p13.33	B4GALNT3	rs60309576-?		6E-10		0.0427	[0.029-0.056] unit decrease	Illumina [31500000] (imputed)	N
589	chr12	623424	623425	rs60309576	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12p13.33	B4GALNT3	rs60309576-?		4E-13		0.053	[0.039-0.067] unit decrease	Illumina [31500000] (imputed)	N
589	chr12	624176	624177	rs12368376	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	12p13.33		rs12368376-C	0.83	2E-23		0.1255	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
590	chr12	658103	658104	rs58895526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NELL1	5,364 Icelandic ancestry individuals	NA	12p13.33		rs58895526-G	0.2168	1E-15		0.179608	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
590	chr12	658103	658104	rs58895526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM189A2	5,367 Icelandic ancestry individuals	NA	12p13.33		rs58895526-G	0.2168	6E-14		0.17028	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
590	chr12	658421	658422	rs11063544	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.33	NR	rs11063544-?	NR	6E-22				Affymetrix [NR]	N
590	chr12	661264	661265	rs200173452	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	12p13.33	B4GALNT3	rs200173452-T	0.004	3E-8		0.18	[0.11-0.24] unit increase	Illumina [NR] (imputed)	N
590	chr12	661655	661656	rs7298766	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.33	B4GALNT3	rs7298766-G	0.306	9E-12	(Protein FAM189A2, FAM189A2.5699.19.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
590	chr12	661655	661656	rs7298766	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.33	B4GALNT3	rs7298766-G	0.306	2E-18	(Protein kinase C-binding protein NELL1, NELL1.6544.33.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
590	chr12	662837	662838	rs1056008	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	12p13.33	NR	rs1056008-C	0.2682	2E-14		0.184	[0.14-0.23] z score increase	Affymetrix, Illumina [6439450] (imputed)	N
590	chr12	665821	665822	rs145153320	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	12p13.33		rs145153320-?	NR	9E-13		0.300358	[0.21-0.39] unit increase	NR [9800000] (imputed)	N
590	chr12	665821	665822	rs145153320	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12p13.33	B4GALNT3	rs145153320-T	0.00250271055847395	2E-11		0.4887	[0.35-0.63] SD increase	Illumina [22400000] (imputed)	N
590	chr12	667216	667217	rs143789073	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	12p13.33		rs143789073-?	NR	4E-11		0.332113	[0.22-0.44] unit increase	NR [9800000] (imputed)	N
590	chr12	676208	676209	rs740893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.33	NR	rs740893-G	0.213982	5E-11		0.00935308	[0.0064-0.0123] unit increase	Affymetrix [16585854] (imputed)	N
590	chr12	676208	676209	rs740893	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p13.33	NR	rs740893-G	0.213982	5E-8		0.00933191	[0.0059-0.0128] unit increase	Affymetrix [16585866] (imputed)	N
590	chr12	698878	698879	rs10774343	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls	NA	12p13.33	NINJ2	rs10774343-?	NR	1E-6		1.28	1.18-1.38	Illumina [7605010] (imputed)	N
590	chr12	711495	711496	rs2607921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.33		rs2607921-C	NR	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
590	chr12	711645	711646	rs2535392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.33	NINJ2	rs2535392-C	0.599558	4E-9		0.013330474	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr12	711645	711646	rs2535392	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs2535392-C	0.572663	4E-21				Affymetrix, Illumina [23472807] (imputed)	N
590	chr12	711661	711662	rs2535393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.33		rs2535393-?	NR	2E-8				NR [~ 8900000] (imputed)	N
590	chr12	717896	717896	rs10651759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.33	NR	rs10651759-TCACC	0.279386	8E-12		0.00583481	[0.004-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
590	chr12	717896	717896	rs10651759	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.33	NR	rs10651759-TCACC	0.279386	5E-10		0.00585052	[0.0038-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
590	chr12	719310	719311	rs10849333	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12p13.33		rs10849333-G	0.723	1E-13				Affymetrix [10369434] (imputed)	N
590	chr12	723901	723902	rs10774375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12p13.33		rs10774375-A	0.391625	1E-13		0.025075	[0.018-0.032] unit decrease	Illumina [13478928] (imputed)	N
590	chr12	727507	727508	rs61916664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33	NINJ2	rs61916664-G	0.52731	9E-45		0.032350935	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
590	chr12	727507	727508	rs61916664	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12p13.33	NINJ2	rs61916664-G	0.5247	9E-21		0.03424022	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr12	733407	733408	rs73596299	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12p13.33	NR	rs73596299-?	NR	7E-7		1410.3931	NR unit decrease	Illumina [2379855]	N
590	chr12	740008	740009	rs34038797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.33		rs34038797-G	NR	3E-40		0.0263	[0.022-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
590	chr12	740008	740009	rs34038797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p13.33		rs34038797-G	NR	4E-18		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
590	chr12	740008	740009	rs34038797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p13.33		rs34038797-G	NR	6E-13		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.478773	1E-19		0.02052623	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.478763	3E-31		0.026280534	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.479333	5E-12		0.015454831	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.47936	5E-23		0.022123907	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.478797	6E-16		0.017951647	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.33	NINJ2	rs34038797-G	0.47931	7E-20		0.02032352	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs34038797-G	0.463593	5E-44				Affymetrix, Illumina [24588908] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.33	NR	rs34038797-G	0.480779	8E-45		0.027043	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p13.33	NR	rs34038797-G	0.481243	2E-23		0.019441	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs34038797-C	0.525545	5E-21				Affymetrix, Illumina [17210439] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p13.33	NR	rs34038797-C	0.520249	3E-23		0.019046	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
590	chr12	740008	740009	rs34038797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.33	NR	rs34038797-G	0.481191	9E-23		0.019285	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
590	chr12	740008	740009	rs34038797	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12p13.33	NINJ2	rs34038797-?	NR	9E-11		0.02839	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
590	chr12	740008	740009	rs34038797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12p13.33	NINJ2	rs34038797-G	0.4857	1E-10		0.02456752	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr12	740008	740009	rs34038797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12p13.33	NINJ2	rs34038797-G	0.4858	6E-15		0.02970475	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr12	740008	740009	rs34038797	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.33	NINJ2	rs34038797-G	0.4862	2E-10		0.0240077	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr12	740960	740961	rs10849373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.33	RP11-218M22.1, NINJ2	rs10849373-A	0.339327	7E-20		0.021496696	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
590	chr12	751513	751514	rs61916675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12p13.33	RP11-218M22.1, NINJ2	rs61916675-G	0.3403	8E-9		0.02185791	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr12	751513	751514	rs61916675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12p13.33	RP11-218M22.1, NINJ2	rs61916675-G	0.3404	6E-10		0.02346854	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr12	751608	751609	rs2369391	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12p13.33		rs2369391-A	0.508	5E-10				Affymetrix [10369434] (imputed)	N
590	chr12	751608	751609	rs2369391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs2369391-C	0.475367	7E-22				Affymetrix, Illumina [23467995] (imputed)	N
590	chr12	751618	751619	rs7487827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12p13.33	RP11-218M22.1, NINJ2	rs7487827-T	0.5091	1E-9		0.02198492	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr12	783311	783312	rs115536119	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	12p13.33	NINJ2	rs115536119-C	0.017	6E-6		2.927	[1.84-4.654]	Affymetrix, Illumina [14074516] (imputed)	N
590	chr12	783483	783484	rs12425791	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	12p13.33	NINJ2, WNK1	rs12425791-?	NR	4E-6		2.026	unit increase (EA, Australian cohort)	Illumina [610255]	N
590	chr12	783483	783484	rs12425791	19369658	Ikram MA	2009-04-15	N Engl J Med	Genomewide association studies of stroke.	Stroke	1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls	259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls	12p13.33	NINJ2, WNK1	rs12425791-A	0.23	8E-10		1.26	[NR]	Affymetrix, Illumina [2194468] (imputed)	N
590	chr12	783483	783484	rs12425791	19369658	Ikram MA	2009-04-15	N Engl J Med	Genomewide association studies of stroke.	Stroke	1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls	259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls	12p13.33	NINJ2, WNK1	rs12425791-A	0.23	2E-9	(ischemic stroke, EA)	1.29	[NR]	Affymetrix, Illumina [2194468] (imputed)	N
590	chr12	783483	783484	rs12425791	19369658	Ikram MA	2009-04-15	N Engl J Med	Genomewide association studies of stroke.	Stroke	1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls	259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls	12p13.33	NINJ2, WNK1	rs12425791-A	0.23	1E-9	(ischemic stroke)	1.29	[NR]	Affymetrix, Illumina [2194468] (imputed)	N
590	chr12	783483	783484	rs12425791	19369658	Ikram MA	2009-04-15	N Engl J Med	Genomewide association studies of stroke.	Stroke	1,164 European ancestry ischemic cases, 380 European ancestry cases, 18,058 European ancestry controls	259 African American ancestry ischemic cases, 41 African American ancestry cases, 2,704 African American ancestry controls, 652 European ancestry ischemic cases, 3,613 European ancestry controls	12p13.33	NINJ2, WNK1	rs12425791-A	0.23	1E-9	(EA)	1.27	[NR]	Affymetrix, Illumina [2194468] (imputed)	N
590	chr12	785467	785468	rs10849455	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	12p13.33	NR	rs10849455-G	NR	7E-6	(Hispanic)	2.94	[1.68-4.21] unit increase	Affymetrix [14000000] (imputed)	N
591	chr12	799078	799079	rs12302895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33		rs12302895-A	0.226376	2E-9		0.017212298	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
591	chr12	799146	799147	rs73037168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33		rs73037168-T	0.129353	2E-11		0.02309484	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr12	800833	800834	rs145863439	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12p13.33	NR	rs145863439-?	NR	2E-7	(Japanese)	0.9962	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
591	chr12	882440	882441	rs11064523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.33	WNK1	rs11064523-G	0.170296	1E-14		0.022975558	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr12	901564	901565	rs10774463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p13.33		rs10774463-?	NR	1E-7				NR [~ 8900000] (imputed)	N
591	chr12	914079	914079	rs71051385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.33	WNK1	rs71051385-ATATTTTTATATTT	0.578859	3E-9		0.014790279	[0.0099-0.0197] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr12	939479	939480	rs11611246	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p13.33	NA	rs11611246-T	0.199	2E-28		0.0223	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
592	chr12	939479	939480	rs11611246	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12p13.33	NA	rs11611246-T	0.199	2E-28		0.0223	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
592	chr12	939479	939480	rs11611246	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12p13.33	NA	rs11611246-T	0.199	2E-28		0.0223	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
592	chr12	939479	939480	rs11611246	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12p13.33	NR	rs11611246-G	NR	2E-12		0.022	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
592	chr12	939479	939480	rs11611246	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12p13.33	KDM5A, CCDC77, B4GALNT3, NINJ2, RAD52, ERC1	rs11611246-T	0.1987221899496	1E-11		0.024242502	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
592	chr12	939479	939480	rs11611246	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12p13.33	WNK1	rs11611246-T	0.203	6E-6	(EA, men)	0.024	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
592	chr12	939479	939480	rs11611246	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12p13.33	WNK1	rs11611246-T	0.202	2E-7	(EA)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
592	chr12	939479	939480	rs11611246	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12p13.33	WNK1	rs11611246-T	0.201	2E-7		0.02	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
592	chr12	973276	973276	rs372936466	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs372936466-?	NR	5E-9		0.0253698	[0.017-0.034] unit increase	Affymetrix [20259828] (imputed)	N
592	chr12	975947	975948	rs12309274	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	12p13.33	NR	rs12309274-T	0.85	3E-6	(East Asian)	1.11	[1.06-1.16]	Affymetrix, Illumina [2400000] (imputed)	N
592	chr12	980924	980925	rs11613704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	12p13.33	WNK1	rs11613704-A	0.2008	3E-11		0.02968211	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr12	980924	980925	rs11613704	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12p13.33	WNK1	rs11613704-A	0.2008	3E-11		0.02963015	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr12	991305	991306	rs55726687	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12p13.33	WNK1	rs55726687-G	0.79024	3E-17		0.0144994	[0.011-0.018] unit decrease	Affymetrix [12370749]	N
592	chr12	991305	991306	rs55726687	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12p13.33	WNK1	rs55726687-G	0.79024	3E-16		0.0137557	[0.01-0.017] unit decrease	Affymetrix [12370749]	N
592	chr12	991305	991306	rs55726687	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12p13.33	NR	rs55726687-A	0.2104	8E-14		0.022673251	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
592	chr12	991305	991306	rs55726687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p13.33		rs55726687-?	NR	3E-26				NR [~ 8900000] (imputed)	N
592	chr12	991709	991710	rs12301299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.33	WNK1	rs12301299-C	0.163	2E-14	(Beta-defensin 119, DEFB119.13455.10.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
592	chr12	995605	995606	rs10744727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs10744727-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
592	chr12	998364	998365	rs12828016	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p13.33	NA	rs12828016-T	0.391	4E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
592	chr12	998364	998365	rs12828016	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12p13.33	WNK1	rs12828016-G	0.6132	5E-15		0.0139	[0.01-0.017] unit increase	Illumina [246328]	N
592	chr12	998818	998819	rs7953330	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12p13.33	NR	rs7953330-C	0.3	2E-13		0.89	[0.85-0.93]	Illumina [8468885] (imputed)	N
592	chr12	998818	998819	rs7953330	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	12p13.33	WNK1	rs7953330-G	0.6847322140000001	7E-13		1.1567484	[1.11-1.2]	Illumina [10439017] (imputed)	N
592	chr12	998818	998819	rs7953330	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	12p13.33	WNK1	rs7953330-G	0.687905768	6E-12		1.0911875	[1.06-1.12]	Illumina [10439017] (imputed)	N
592	chr12	1002856	1002857	rs4619206	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	12p13.33	WNK1	rs4619206-C	0.70942984	1E-9		1.1038703	[1.07-1.14]	Illumina [10439017] (imputed)	N
592	chr12	1016881	1016881	rs3833517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.33	NR	rs3833517-I	0.411039	1E-10		0.013211	[0.0092-0.0172] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
592	chr12	1031453	1031454	rs7962050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs7962050-A	0.605001	3E-10				Affymetrix, Illumina [20825802] (imputed)	N
592	chr12	1031453	1031454	rs7962050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.33	NR	rs7962050-A	0.606933	5E-11		0.013056	[0.0092-0.0169] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
592	chr12	1033182	1033183	rs57307148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.33		rs57307148-A	NR	3E-17		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
592	chr12	1033182	1033183	rs57307148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p13.33		rs57307148-A	NR	9E-17		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
592	chr12	1033182	1033183	rs57307148	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs57307148-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
592	chr12	1034113	1034114	rs10708242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12p13.33	RAD52	rs10708242-A	0.661157	2E-11		0.016521119	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
592	chr12	1034113	1034114	rs10708242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12p13.33	RAD52	rs10708242-A	0.661107	4E-10		0.015322974	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
592	chr12	1034113	1034114	rs10708242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p13.33	RAD52	rs10708242-A	0.661122	4E-9		0.014422295	[0.0096-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
592	chr12	1036041	1036042	rs7487683	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.33	RAD52	rs7487683-T	0.04	5E-12	(RELT-like protein 1, RELL1.13399.33.3)	0.44	[0.32-0.56] unit increase	Affymetrix [10572788] (imputed)	N
592	chr12	1039799	1039799	rs577496143	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RAD52	rs577496143-?	NR	2E-8	(female)	0.977006	[NR] unit decrease	Affymetrix [NR] (imputed)	N
592	chr12	1040218	1040219	rs11571409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.33	NR	rs11571409-A	0.451753	3E-10		0.011587	[0.008-0.0152] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
592	chr12	1041449	1041450	rs11571404	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	12p13.33	RAD52	rs11571404-C	0.797317	4E-8		1.0300542	NR	Affymetrix [~ 9600000] (imputed)	N
592	chr12	1041449	1041450	rs11571404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	12p13.33	RAD52	rs11571404-T	0.2051	1E-9		0.02723355	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr12	1041449	1041450	rs11571404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	12p13.33	RAD52	rs11571404-T	0.2051	1E-10		0.02899049	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr12	1043833	1043834	rs10849594	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p13.33	RAD52	rs10849594-T	0.8132	5E-8		0.1891	[0.12-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
593	chr12	1054955	1054956	rs147560086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	12p13.33		rs147560086-T	NR	7E-9		0.121	[0.08-0.162] unit decrease	Affymetrix, Illumina [25845450] (imputed)	N
593	chr12	1056029	1056030	rs12822733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p13.33		rs12822733-?	NR	4E-9				NR [~ 8900000] (imputed)	N
593	chr12	1056029	1056030	rs12822733	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	12p13.33	RAD52	rs12822733-C	0.813559578	7E-6		1.1891366	[1.1-1.28]	Illumina [10439017] (imputed)	N
593	chr12	1058687	1058688	rs3748522	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	12p13.33	NR	rs3748522-C	NR	7E-6		0.91	[0.88-0.95]	NR [NR] (imputed)	N
593	chr12	1059555	1059556	rs11571376	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p13.33	RAD52	rs11571376-C	0.7044	3E-12		0.1884	[0.14-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
593	chr12	1064437	1064438	rs10849605	22899653	Timofeeva MN	2012-08-16	Hum Mol Genet	Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls.	Lung cancer	up to 14,900 European ancestry cases, up to 29,485 European ancestry controls	2,338 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	12p13.33	RAD52	rs10849605-?	0.51	6E-7		1.08	[1.04-1.11]	Illumina [up to 536008]	N
593	chr12	1067757	1067758	rs4765655	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs4765655-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
593	chr12	1076854	1076855	rs7309619	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs7309619-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
594	chr12	1205308	1205309	rs117078345	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ERC1	rs117078345-?	NR	4E-11	(male)	1.88304	[NR] unit decrease	Affymetrix [NR] (imputed)	N
594	chr12	1205308	1205309	rs117078345	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ERC1	rs117078345-?	NR	2E-9		1.25857	[NR] unit decrease	Affymetrix [NR] (imputed)	N
594	chr12	1286840	1286841	rs2968869	32768867	Cong S	2020-07-14	Neurobiol Aging	Volumetric GWAS of medial temporal lobe structures identifies an ERC1 locus using ADNI high-resolution T2-weighted MRI data.	Medial temporal lobe substructure volumes	134 European ancestry individuals	NA	12p13.33	ERC1	rs2968869-C	NR	3E-9	(right Brodmann area 36)			Illumina [565373] (imputed)	N
596	chr12	1449198	1449199	rs61913097	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	12p13.33	ERC1	rs61913097-C	0.182	3E-6				Affymetrix [525356]	N
596	chr12	1458884	1458885	rs12298813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.33		rs12298813-?	NR	3E-17				NR [~ 8900000] (imputed)	N
596	chr12	1494431	1494432	rs10128898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.33		rs10128898-?	NR	2E-14				NR [~ 8900000] (imputed)	N
596	chr12	1513525	1513526	rs7971674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p13.33		rs7971674-?	NR	1E-18				NR [~ 8900000] (imputed)	N
596	chr12	1513525	1513526	rs7971674	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	12p13.33	ERC1	rs7971674-T	0.141232478180375	2E-7		0.008934217	unit decrease	NR [9276018] (imputed)	N
597	chr12	1629502	1629503	rs10848507	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs10848507-?	NR	1E-18		0.0282904	[0.022-0.035] unit increase	Affymetrix [20259828] (imputed)	N
597	chr12	1629522	1629523	rs11061814	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	LINC00942	rs11061814-G	0.879142	4E-20		0.025992	[0.02-0.032] unit increase	NR [13737936] (imputed)	N
597	chr12	1637128	1637129	rs7959604	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	LINC00942	rs7959604-C	0.924977	2E-45		0.0505003	[0.044-0.057] unit increase	NR [13737936] (imputed)	N
597	chr12	1637128	1637129	rs7959604	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs7959604-?	NR	3E-63		0.062004	[0.054-0.07] unit increase	Affymetrix [20259828] (imputed)	N
597	chr12	1637128	1637129	rs7959604	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs7959604-C	0.924893	7E-11	(women)	0.0563576	[0.039-0.074] unit increase	NR [17166351] (imputed)	N
597	chr12	1637128	1637129	rs7959604	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs7959604-C	0.924684	8E-20		0.0559835	[0.043-0.068] unit increase	NR [17166351] (imputed)	N
597	chr12	1637128	1637129	rs7959604	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs7959604-C	0.924445	1E-10	(men)	0.0576279	[0.039-0.077] unit increase	NR [17166351] (imputed)	N
597	chr12	1637912	1637913	rs4283041	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	12p13.33	ERC1, FBXL14	rs4283041-T	0.17	3E-6	(Metopion eminence depth)	0.073	[NR] unit decrease	Affymetrix [311944]	N
597	chr12	1638170	1638171	rs2887571	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12p13.33	ERC1	rs2887571-A	0.76	6E-12		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr12	1638214	1638214	rs144339224	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs144339224-?	NR	1E-62		0.0410627	[0.036-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
597	chr12	1638214	1638214	rs144339224	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs144339224-A	0.762514	3E-8	(men)	0.0335476	[0.022-0.045] unit decrease	NR [17166351] (imputed)	N
597	chr12	1638214	1638214	rs144339224	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs144339224-A	0.76228	7E-23		0.0384229	[0.031-0.046] unit decrease	NR [17166351] (imputed)	N
597	chr12	1638214	1638214	rs144339224	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	LINC00942	rs144339224-A	0.762075	5E-17	(women)	0.044512	[0.034-0.055] unit decrease	NR [17166351] (imputed)	N
597	chr12	1638670	1638671	rs35223785	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	LINC00942	rs35223785-A	0.755602	1E-47		0.0315906	[0.027-0.036] unit decrease	NR [13737936] (imputed)	N
597	chr12	1638670	1638671	rs35223785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.33		rs35223785-?	NR	7E-68				NR [~ 8900000] (imputed)	N
597	chr12	1638670	1638671	rs35223785	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs35223785-?	NR	2E-63		0.0402332	[0.035-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
597	chr12	1638771	1638772	rs74057888	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.33	NR	rs74057888-?	NR	3E-8	(CSF)			NR [9227495] (imputed)	N
597	chr12	1638771	1638772	rs74057888	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs74057888-?	NR	2E-62		0.0633929	[0.056-0.071] unit increase	Affymetrix [20259828] (imputed)	N
597	chr12	1639248	1639249	rs35125553	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12p13.33	NR	rs35125553-A	0.7145	5E-9		0.0383	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
597	chr12	1639707	1639708	rs72653424	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs72653424-?	NR	8E-13		0.0160252	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
597	chr12	1661607	1661608	rs143980687	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12p13.33	Intergenic	rs143980687-G	0.999	5E-6	(AA)	1.017	NR unit increase	Illumina [NR] (imputed)	N
598	chr12	1734269	1734270	rs4766398	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	12p13.33	WNT5B	rs4766398-?		1E-7				Illumina [479403]	N
598	chr12	1738002	1738003	rs12425600	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.33	NR	rs12425600-A	0.01742	1E-8	(AK3)	0.2553	NR unit increase	Illumina [1671387] (imputed)	N
598	chr12	1740170	1740171	rs10773971	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	12p13.33	WNT5B	rs10773971-?		1E-7				Illumina [479403]	N
598	chr12	1740343	1740344	rs74061309	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.33	NR	rs74061309-C	0.0122	2E-14	(ME1)	0.1634	NR unit increase	Illumina [1671387] (imputed)	N
598	chr12	1756641	1756642	rs2010851	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p13.33	NR	rs2010851-?	NR	8E-6		4.473	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
598	chr12	1766972	1766973	rs6489319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p13.33		rs6489319-?	NR	1E-9				NR [~ 8900000] (imputed)	N
598	chr12	1776742	1776743	rs12814301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.33		rs12814301-A	0.243334	5E-9		0.015443182	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr12	1776742	1776743	rs12814301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12p13.33	NR	rs12814301-G	0.755182	2E-12		0.015913	[0.011-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
598	chr12	1821392	1821393	rs7964003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12p13.33	ADIPOR2	rs7964003-T	0.278635	7E-11		0.016213562	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr12	1838007	1838008	rs9739162	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	12p13.33	NR	rs9739162-G	0.46	3E-6	(EA)	0.09	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
599	chr12	1856952	1856953	rs12230440	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	12p13.33	ADIPOR2	rs12230440-?	NR	3E-6	(PHT)			Illumina [NR]	N
599	chr12	1902163	1902164	rs2286379	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	12p13.33	CACNA2D4	rs2286379-?		2E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
599	chr12	1911859	1911860	rs12580035	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	12p13.33	ADIPOR2, CACNA2D4	rs12580035-C	0.81	5E-6	(women)	0.087	[0.05-0.124] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
599	chr12	1916837	1916838	rs11611260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs11611260-?	NR	2E-6	(TAG 54:3)	1.2965456	[0.76-1.84] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1934580	1934581	rs2887631	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	12p13.33	NR	rs2887631-G	0.275	4E-6	(Illicit drug use)			Illumina [527829]	N
599	chr12	1937074	1937075	rs11061991	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p13.33	NR	rs11061991-?	NR	2E-6		0.0082129	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	7E-6	(TAG 56:8)	0.43925142	[0.25-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	6E-6	(TAG 52:6)	0.44319212	[0.25-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	6E-6	(TAG 50:5)	0.43890312	[0.25-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	4E-6	(TAG 50:3)	0.4492814	[0.26-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	3E-6	(DAG 34:2)	0.456219	[0.26-0.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	2E-6	(TAG 52:5)	0.46689236	[0.28-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	2E-6	(TAG 48:3)	0.47031844	[0.28-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	1E-6	(TAG 54:8)	0.47275373	[0.28-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	1E-6	(TAG 54:7)	0.47443348	[0.28-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1937510	1937511	rs10437823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	CACNA2D4	rs10437823-?	NR	1E-6	(TAG 50:4)	0.48083138	[0.29-0.67] unit increase	Affymetrix [at least 2500000] (imputed)	N
599	chr12	1954095	1954096	rs4766424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p13.33	Intergenic	rs4766424-C	0.1217	2E-10	(MTAG)	0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr12	1954095	1954096	rs4766424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.33		rs4766424-C	0.1237	2E-11		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
599	chr12	1954095	1954096	rs4766424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.33	Intergenic	rs4766424-C	0.1237	3E-13	(MTAG)	0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr12	1964884	1964885	rs886942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.33		rs886942-T	0.8747	2E-11	(conditional-joint)	0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
600	chr12	1969261	1969262	rs10848582	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (joint pain)	251 Japanese ancestry female cases, 5,483 Japanese ancestry female controls	277 Japanese ancestry female cases, 5,337 Japanese ancestry female controls	12p13.33	NR	rs10848582-C	0.333165165	7E-6		0.32168108	[0.18-0.46] unit decrease	Affymetrix [536506]	N
600	chr12	1987244	1987245	rs7308134	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p13.33	NR	rs7308134-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
600	chr12	2055265	2055266	rs7222	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p13.33	NA	rs7222-T	0.499	1E-9		0.0109	[0.0074-0.0144] unit increase	NR [~ 27400000] (imputed)	N
600	chr12	2056362	2056363	rs10505725	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.33	DCP1B	rs10505725-A	0.28	8E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
600	chr12	2087090	2087091	rs139956004	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	12p13.33	DCP1B	rs139956004-G	0.0153	6E-7		0.0069	[0.0042-0.0096] unit increase	Affymetrix [~ 7740000] (imputed)	N
600	chr12	2091256	2091257	rs11062040	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	12p13.33	DCP1B	rs11062040-A	NR	8E-6		1.4	[1.2-1.7]	NR [7738399] (imputed)	N
600	chr12	2091256	2091257	rs11062040	22142827	Innocenti F	2011-12-05	Clin Cancer Res	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer	294 European ancestry cases	NA	12p13.33	DCP1B	rs11062040-A	NR	8E-6		1.4	[1.20-1.70]	Illumina [330690]	N
601	chr12	2106115	2106116	rs2470397	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs2470397-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
601	chr12	2106115	2106116	rs2470397	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p13.33	NA	rs2470397-T	0.8143	3E-9		0.0128	[0.0085-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
601	chr12	2135448	2135449	rs73044404	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p13.33	NR	rs73044404-G	NR	5E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
601	chr12	2157924	2157925	rs10774018	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12p13.33	CACNA1C	rs10774018-G	0.779662	1E-8		0.0094769	[0.0062-0.0127] unit decrease	Affymetrix [12370749]	N
601	chr12	2157924	2157925	rs10774018	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12p13.33	NR	rs10774018-C	0.2169	1E-10		0.019471457	[0.014-0.025] unit increase	Affymetrix [10549349] (imputed)	N
601	chr12	2159555	2159556	rs2108635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.33		rs2108635-G	NR	2E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
601	chr12	2159555	2159556	rs2108635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p13.33		rs2108635-G	NR	2E-12		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
601	chr12	2159555	2159556	rs2108635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p13.33		rs2108635-?	NR	3E-13				NR [~ 8900000] (imputed)	N
601	chr12	2162368	2162369	rs11062091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.33	NR	rs11062091-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
601	chr12	2174903	2174904	rs11062098	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.33	NR	rs11062098-?	NR	1E-7				Affymetrix [NR]	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	9E-9	(298 ms)	0.0402644	[0.026-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	8E-11	(336 ms)	0.0462807	[0.032-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	7E-11	(306 ms)	0.0460635	[0.032-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	4E-9	(300 ms)	0.0413662	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	4E-11	(334 ms)	0.0477055	[0.033-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	4E-10	(338 ms)	0.0445825	[0.03-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	3E-8	(340 ms)	0.0396821	[0.025-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	3E-8	(296 ms)	0.0389432	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	3E-8	(294 ms)	0.0389634	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	3E-10	(320 ms)	0.0436746	[0.029-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-9	(332 ms)	0.0431035	[0.029-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-9	(312 ms)	0.0420443	[0.028-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-9	(310 ms)	0.0414767	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-8	(330 ms)	0.0400783	[0.026-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-11	(316 ms)	0.0470288	[0.033-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	2E-10	(318 ms)	0.0450765	[0.031-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178164	2178165	rs11062103	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11062103-A	0.822662	1E-10	(304 ms)	0.0453506	[0.031-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
601	chr12	2178759	2178760	rs4765663	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	12p13.33	CACNA1C	rs4765663-C	0.16	4E-9		0.02	[0.014-0.026] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
601	chr12	2184465	2184466	rs2283274	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12p13.33	CACNA1C	rs2283274-G	0.825661	2E-16		0.702925	[0.54-0.87] unit increase	Affymetrix [~ 7800000] (imputed)	N
601	chr12	2184465	2184466	rs2283274	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12p13.33	CACNA1C	rs2283274-C	0.18	7E-20		0.4051	[0.32-0.49] unit decrease	Affymetrix [19941912] (imputed)	N
602	chr12	2272320	2272321	rs4765900	31641590	Stevelink R	2019-10-11	Mol Genet Metab Rep	Assessing the genetic association between vitamin B6 metabolism and genetic generalized epilepsy.	Pyridoxal levels	2,232 Irish ancestry individuals	NA	12p13.33	NR	rs4765900-?	NR	5E-8				NR [~ 6000000] (imputed)	N
602	chr12	2285730	2285731	rs2238044	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	12p13.33	NR	rs2238044-A	0.3797	6E-9		0.06569375	[0.044-0.088] unit increase	NR [NR]	N
602	chr12	2285730	2285731	rs2238044	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	12p13.33	NR	rs2238044-A	0.3797	6E-9		0.065534785	[0.043-0.088] unit increase	NR [NR]	N
602	chr12	2286799	2286800	rs7968204	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	12p13.33	NR	rs7968204-?	NR	5E-6		0.2849	[0.16-0.4] unit increase	Illumina [at least 560000] (imputed)	N
602	chr12	2288944	2288945	rs2159102	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.33	CACNA1C	rs2159102-A	0.3956	4E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix [18391927] (imputed)	N
602	chr12	2289650	2289651	rs2239017	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	12p13.33	NR	rs2239017-G	0.4015	2E-8		0.011839363	[0.0077-0.016] unit increase	Affymetrix [10613246] (imputed)	N
602	chr12	2332103	2332104	rs11062162	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12p13.33	NR	rs11062162-G	0.402	2E-9		0.00660453	[0.0044-0.0088] unit increase	NR [9732723] (imputed)	N
602	chr12	2335940	2335941	rs2239030	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12p13.33	CACNA1C	rs2239030-A	0.432	6E-15		0.0093	[0.0069-0.0117] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
602	chr12	2335940	2335941	rs2239030	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12p13.33	CACNA1C	rs2239030-A	0.429	7E-11		0.012764932	[0.0089-0.0166] unit increase	Illumina [9339358] (imputed)	N
602	chr12	2340797	2340798	rs34382810	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	12p13.33	CACNA1C	rs34382810-?		1E-6				Illumina [~ 9600000] (imputed)	N
602	chr12	2340797	2340798	rs34382810	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	12p13.33	CACNA1C	rs34382810-?		2E-6				Illumina [~ 9600000] (imputed)	N
602	chr12	2343550	2343551	rs11609729	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs11609729-T	0.948466	2E-8	(-24 ms)	0.0688123	[0.044-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
602	chr12	2344643	2344644	rs769087	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	12p13.33	NR	rs769087-A	NR	3E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
602	chr12	2344959	2344960	rs2007044	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	12p13.33		rs2007044-?	NR	2E-17		0.0256	NR unit increase	NR [4484088] (imputed)	N
602	chr12	2344959	2344960	rs2007044	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12p13.33	CACNA1C	rs2007044-?	NR	2E-15		0.016178014	[0.012-0.02] unit increase	NR [7306098]	N
602	chr12	2344959	2344960	rs2007044	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	12p13.33	NR	rs2007044-?	NR	9E-18				Illumina [up to 5582932] (imputed)	N
602	chr12	2344959	2344960	rs2007044	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12p13.33	CACNA1C, CACNA1C-AS4, CACNA1C-IT3	rs2007044-?	NR	6E-20		1.0928961	[1.07-1.11]	Illumina [8000000] (imputed)	N
602	chr12	2344959	2344960	rs2007044	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	12p13.33	CACNA1C, CACNA1C-AS4, CACNA1C-IT3	rs2007044-?		6E-14		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
602	chr12	2344959	2344960	rs2007044	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p13.33	NR	rs2007044-G	NR	1E-17		1.098901	[NR]	Illumina [7158791] (imputed)	N
602	chr12	2344959	2344960	rs2007044	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12p13.33	CACNA1C	rs2007044-G	0.376	3E-18		1.0964912	[1.07-1.12]	Affymetrix, Illumina [9005918] (imputed)	N
602	chr12	2345294	2345295	rs1006737	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	12p13.33	CACNA1C	rs1006737-?	NR	7E-8	(BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
602	chr12	2345294	2345295	rs1006737	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	12p13.33	CACNA1C	rs1006737-?	NR	2E-6	(SCZ vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
602	chr12	2345294	2345295	rs1006737	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	12p13.33	CACNA1C	rs1006737-?		6E-13	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
602	chr12	2345294	2345295	rs1006737	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	12p13.33	CACNA1C	rs1006737-A	0.332	5E-12		1.103	[1.08-1.13]	Affymetrix, Illumina [9871789]	N
602	chr12	2345294	2345295	rs1006737	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	12p13.33	DCP1B, CACNA1C	rs1006737-?	NR	5E-9	(5 degree of freedom test)	1.071	[1.05-1.10]	NR [1252901] (imputed)	N
602	chr12	2345294	2345295	rs1006737	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	12p13.33	CACNA1C	rs1006737-?	NR	3E-8				Affymetrix, Perlegen [1472580] (imputed)	N
602	chr12	2345294	2345295	rs1006737	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	12p13.33	CACNA1C	rs1006737-?	NR	7E-8				Affymetrix [1769948] (imputed)	N
602	chr12	2345294	2345295	rs1006737	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	12p13.33	CACNA1C	rs1006737-A	0.32	7E-8		1.18	[NR]	Affymetrix [1769948] (imputed)	N
602	chr12	2346392	2346393	rs2159100	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	12p13.33		rs2159100-?	NR	4E-15		0.0259	NR unit increase	NR [4425810] (imputed)	N
602	chr12	2346392	2346393	rs2159100	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs anorexia nervosa (ordinary least squares (OLS))	20,352 bipolar disorder cases, 16,992 anorexia nervosa cases	NA	12p13.33		rs2159100-?	NR	5E-9		0.0213	NR unit increase	NR [5569514] (imputed)	N
602	chr12	2346392	2346393	rs2159100	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12p13.33	NR	rs2159100-?	NR	1E-19		1.10076	[1.08-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
602	chr12	2346392	2346393	rs2159100	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p13.33	CACNA1C	rs2159100-T	NR	6E-18		1.099	[1.08-1.12]	Illumina [6627481] (imputed)	N
602	chr12	2346392	2346393	rs2159100	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12p13.33	CACNA1C	rs2159100-T	NR	3E-19		1.102	[1.08-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
602	chr12	2348843	2348844	rs11062170	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	12p13.33	CACNA1C	rs11062170-G	0.667	2E-15		0.92506	[0.91-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
602	chr12	2348843	2348844	rs11062170	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	12p13.33	NR	rs11062170-G	0.665	2E-16		0.90538	[0.88-0.93]	Affymetrix, Illumina [7549318] (imputed)	N
602	chr12	2349583	2349584	rs4765905	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.33	DCP1B	rs4765905-?	NR	2E-6	(SM 18:1)	0.17597616	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
602	chr12	2349583	2349584	rs4765905	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	12p13.33	TCF4	rs17597926-?	NR	1E-7		1.36	[NR]	Affymetrix [745006]	N
602	chr12	2349583	2349584	rs4765905	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	12p13.33	CACNA1C	rs4765905-?	NR	2E-7		1.11	[NR]	Affymetrix [745006]	N
602	chr12	2349583	2349584	rs4765905	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	12p13.33	CACNA1C	rs4765905-?	NR	2E-6		1.08	[1.05-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
602	chr12	2358737	2358738	rs141955301	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p13.33	CACNA1C	rs141955301-T	1.0	5E-6	(AA)	0.631	unit increase	Illumina [NR] (imputed)	N
603	chr12	2366706	2366707	rs117888112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p13.33	Intergenic	rs117888112-A	0.045	4E-8	(MTAG)	0.0219	[0.014-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
603	chr12	2366706	2366707	rs117888112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.33	Intergenic	rs117888112-A	0.0428	8E-11	(MTAG)	0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
603	chr12	2387098	2387099	rs10744560	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs autism spectrum disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 18,381 autism spectrum disorder cases	NA	12p13.33		rs10744560-?	NR	5E-9		0.019	NR unit increase	NR [6135876] (imputed)	N
603	chr12	2387098	2387099	rs10744560	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	12p13.33	CACNA1C	rs10744560-T	NR	5E-10		1.075	[1.051-1.100]	Illumina [3742365] (imputed)	N
603	chr12	2387098	2387099	rs10744560	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	12p13.33	NR	rs10744560-?		1E-8				NR [8956949]	N
603	chr12	2387098	2387099	rs10744560	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12p13.33	CACNA1C, CACNA1C-AS4, CACNA1C-IT3	rs10744560-T	0.336	4E-10		1.07595	[1.05-1.1]	NR [9372253] (imputed)	N
603	chr12	2387098	2387099	rs10744560	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	12p13.33	CACNA1C, CACNA1C-AS4, CACNA1C-IT3	rs10744560-T	0.336	8E-9		1.09483		NR [9372253] (imputed)	N
603	chr12	2402245	2402246	rs1024582	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12p13.33	NR	rs1024582-?		1E-13				NR [8377093]	N
603	chr12	2402245	2402246	rs1024582	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p13.33	CACNA1C	rs1024582-A	NR	6E-18	(EA)	1.1037527	[1.08-1.13]	Illumina [6627481] (imputed)	N
603	chr12	2402245	2402246	rs1024582	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	12p13.33	CACNA1C, CACNA1C-AS4, CACNA1C-IT3	rs1024582-A		8E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [NR]	N
603	chr12	2408193	2408194	rs4298967	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4298967-?	NR	2E-19				NR [2625067]	N
603	chr12	2408193	2408194	rs4298967	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs4298967-?	NR	5E-17				NR [2625067]	N
603	chr12	2408193	2408194	rs4298967	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA			rs4298967-?	NR	1E-11		0.0234	NR unit decrease	NR [4428082] (imputed)	N
603	chr12	2408193	2408194	rs4298967	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs4298967-A	0.337999999999999	1E-18		0.10091709	[0.079-0.123] unit increase	NR [NR]	N
603	chr12	2408193	2408194	rs4298967	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs4298967-A	0.337999999999999	1E-16		0.09423101	[0.072-0.116] unit increase	NR [NR]	N
603	chr12	2408193	2408194	rs4298967	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs4298967-?		3E-17				NR [8377093]	N
603	chr12	2408193	2408194	rs4298967	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs4298967-?		3E-16				NR [520857]	N
603	chr12	2408193	2408194	rs4298967	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		CACNA1C	rs4298967-?		8E-20				NR [6786993] (imputed)	N
603	chr12	2419519	2419520	rs200515750	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12p13.33	intergenic	rs200515750-A	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
603	chr12	2419895	2419896	rs4765913	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	12p13.33	CACNA1C	rs4765913-A	0.188	2E-6		3.114	[1.942-4.995]	Illumina [7585874] (imputed)	N
603	chr12	2419895	2419896	rs4765913	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	12p13.33	CACNA1C	rs4765913-?	NR	3E-9		1.13		Affymetrix, Illumina [8837380] (imputed)	N
603	chr12	2419895	2419896	rs4765913	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	12p13.33	CANCNA1C	rs4765913-A	NR	2E-8		1.14	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
603	chr12	2420376	2420377	rs4765914	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or bipolar disorder	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 7,481 European ancestry bipolar disorder cases, 9,250 European ancestry bipolar disorder controls	322,580 individuals	12p13.33	CACNA1C	rs4765914-T	0.79	5E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr12	2420525	2420526	rs10774037	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	12p13.33	CACNA1C	rs10774037-A	0.79	8E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
603	chr12	2436997	2436998	rs3819536	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12p13.33	CACNA1C	rs3819536-G	0.295117	3E-8		0.03667242	[0.024-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
603	chr12	2441467	2441468	rs79712710	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p13.33		rs79712710-A	0.056263	7E-6		0.065092	[0.037-0.094] unit increase	Affymetrix [15580782] (imputed)	N
603	chr12	2444378	2444379	rs11062194	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of aspartame	1,757 European ancestry twins	NA	12p13.33	CACNA1C	rs11062194-C	0.92	3E-6		0.3	[0.18-0.42] unit increase	Illumina [4381914] (imputed)	N
603	chr12	2445398	2445399	rs2238066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12p13.33		rs2238066-A	NR	3E-10		0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
603	chr12	2450594	2450595	rs2024077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12p13.33		rs2024077-A	NR	1E-9		0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
604	chr12	2499848	2499849	rs740417	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	12p13.33	NR	rs740417-A	0.6243	4E-8		0.06133531	[0.04-0.083] unit increase	NR [NR]	N
604	chr12	2499848	2499849	rs740417	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	12p13.33	NR	rs740417-?		7E-9				NR [520857]	N
604	chr12	2500430	2500431	rs10491964	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12p13.33	NR	rs10491964-?		1E-9				NR [8377093]	N
604	chr12	2500430	2500431	rs10491964	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12p13.33	CACNA1C	rs10491964-?		2E-8				NR [6786993] (imputed)	N
604	chr12	2502995	2502996	rs56151937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33	CACNA1C	rs56151937-G	0.1527	3E-9		0.018587485	[0.012-0.025] unit increase	Affymetrix [93095623] (imputed)	N
604	chr12	2503991	2503992	rs7973812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.33	CACNA1C	rs7973812-C	0.143816	5E-21		0.030036332	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr12	2508570	2508571	rs7301013	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	CACNA1C	rs7301013-A	0.848552	6E-21		0.0241509	[0.019-0.029] unit decrease	NR [13737936] (imputed)	N
604	chr12	2508570	2508571	rs7301013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.33		rs7301013-?	NR	3E-19				NR [~ 8900000] (imputed)	N
604	chr12	2508570	2508571	rs7301013	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs7301013-?	NR	7E-20		0.0251011	[0.019-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
604	chr12	2508570	2508571	rs7301013	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	CACNA1C	rs7301013-A	0.847514	9E-7	(men)	0.0342437	[0.02-0.048] unit decrease	NR [17166351] (imputed)	N
604	chr12	2508570	2508571	rs7301013	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	CACNA1C	rs7301013-A	0.84666	3E-12		0.0318043	[0.023-0.041] unit decrease	NR [17166351] (imputed)	N
604	chr12	2508570	2508571	rs7301013	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.33	CACNA1C	rs7301013-A	0.845915	1E-6	(women)	0.0302288	[0.018-0.043] unit decrease	NR [17166351] (imputed)	N
604	chr12	2508570	2508571	rs7301013	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	12p13.33	CACNA1C	rs7301013-A	0.83	5E-7		0.076	[0.045-0.107] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
604	chr12	2508570	2508571	rs7301013	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	12p13.33	CACNA1C	rs7301013-A	0.83	9E-7		0.081	[0.048-0.114] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
604	chr12	2511161	2511162	rs2370515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.33		rs2370515-A	NR	3E-8		0.0183	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
604	chr12	2511161	2511162	rs2370515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs2370515-A	0.138054	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
604	chr12	2511161	2511162	rs2370515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.33	NR	rs2370515-A	0.145113	2E-13		0.019055	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
604	chr12	2511830	2511831	rs2239063	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2239063-?	NR	1E-9				NR [2625067]	N
604	chr12	2511830	2511831	rs2239063	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs2239063-?	NR	2E-8				NR [2625067]	N
604	chr12	2511830	2511831	rs2239063	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs2239063-A	0.6988	6E-9		0.07032645	[0.047-0.094] unit increase	NR [NR]	N
604	chr12	2511830	2511831	rs2239063	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA		NR	rs2239063-?		1E-8				NR [8377093]	N
604	chr12	2511830	2511831	rs2239063	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CACNA1C	rs2239063-A	NR	2E-8	(EA)	1.071	[1.05-1.09]	Illumina [6627481] (imputed)	N
604	chr12	2511830	2511831	rs2239063	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to olanzapine in schizophrenia	412 Han Chinese ancestry cases	415 Han Chinese ancestry cases		CACNA1C	rs2239063-A	NR	1E-8		7.04	[4.63-9.45] unit increase	Illumina [6097251] (imputed)	N
604	chr12	2512811	2512811	rs34314354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.33	CACNA1C	rs34314354-AC	0.143976	4E-11		0.021015568	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr12	2513308	2513309	rs758117	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p13.33	CACNA1C	rs758117-C	NR	8E-10		1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
604	chr12	2513308	2513309	rs758117	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12p13.33	CACNA1C	rs758117-C	NR	2E-8		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
604	chr12	2514111	2514112	rs12823424	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p13.33	NR	rs12823424-A	NR	5E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
604	chr12	2517886	2517887	rs35407591	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12p13.33	CACNA1C	rs35407591-A	0.3734	1E-16		0.0303972	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr12	2518351	2518352	rs4765929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12p13.33		rs4765929-C	0.336783	6E-15		0.0256689	[0.019-0.032] unit increase	Illumina [13479135] (imputed)	N
604	chr12	2518351	2518352	rs4765929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	12p13.33		rs4765929-C	0.336843	7E-12		0.0221855	[0.016-0.029] unit increase	Illumina [13478948] (imputed)	N
604	chr12	2518351	2518352	rs4765929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	12p13.33	NR	rs4765929-T	0.666233	2E-15		0.030767	[0.023-0.038] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
604	chr12	2518351	2518352	rs4765929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	12p13.33	NR	rs4765929-T	0.666224	2E-12		0.027197	[0.02-0.035] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
604	chr12	2518351	2518352	rs4765929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	12p13.33	NR	rs4765929-T	0.664821	5E-14		0.029825	[0.022-0.038] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
604	chr12	2519415	2519416	rs11062219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	12p13.33		rs11062219-T	0.336492	3E-14		0.0250717	[0.019-0.032] unit increase	Illumina [13478961] (imputed)	N
604	chr12	2521578	2521579	rs55935819	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12p13.33	CACNA1C	rs55935819-G	0.6364000000000001	2E-12		0.1271	[0.092-0.163] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.361585	1E-65				Affymetrix, Illumina [24332387] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.370904	5E-53		0.029363	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.361555	2E-57				Affymetrix, Illumina [24653286] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.370688	7E-48		0.027756	[0.024-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.362123	5E-65				Affymetrix, Illumina [24558453] (imputed)	N
604	chr12	2521811	2521812	rs17223841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p13.33	NR	rs17223841-G	0.370742	9E-53		0.029225	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
604	chr12	2522076	2522077	rs35124400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.33	CACNA1C	rs35124400-T	0.371121	2E-38		0.029622344	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
604	chr12	2522076	2522077	rs35124400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p13.33	CACNA1C	rs35124400-T	0.371132	4E-35		0.028310796	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
604	chr12	2522076	2522077	rs35124400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12p13.33	CACNA1C	rs35124400-T	0.371111	1E-40		0.030540742	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
604	chr12	2522980	2522981	rs7311607	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	12p13.33	CACNA1C	rs7311607-G	0.3731	4E-16		0.0298042	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
604	chr12	2523234	2523241	rs146014566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p13.33		rs146014566-G	NR	1E-40		0.0225	[0.019-0.026] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
604	chr12	2523234	2523241	rs146014566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12p13.33		rs146014566-G	NR	1E-43		0.024	[0.021-0.027] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
604	chr12	2523354	2523355	rs7312105	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12p13.33	CACNA1C	rs7312105-G	0.36	3E-9	(EA, PCV)	0.104	[0.067-0.141] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
604	chr12	2523771	2523772	rs16929368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12p13.33		rs16929368-A	NR	1E-48		0.0263	[0.023-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
604	chr12	2523771	2523772	rs16929368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.33		rs16929368-?	NR	3E-45				NR [~ 8900000] (imputed)	N
604	chr12	2523771	2523772	rs16929368	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	12p13.33	CACNA1C	rs16929368-?	NR	3E-9		0.02843	[0.019-0.038] unit increase novel	Illumina [6108953] (imputed)	N
604	chr12	2525472	2525473	rs11062222	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	12p13.33	CACNA1C	rs11062222-A	0.8901165	9E-6		0.442201	[0.25-0.64] unit decrease	Illumina [6952813] (imputed)	N
604	chr12	2538086	2538087	rs10735008	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	12p13.33	CACNA1C	rs10735008-?	NR	7E-6		1.2548	[1.16-1.35]	Illumina [NR] (imputed)	N
605	chr12	2684701	2684702	rs956451	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	12p13.33	CACNA1C	rs956451-?	NR	8E-6	(Pleasant Difference Startle Scores)	0.105	[0.06-0.15] unit decrease	Illumina [527829]	N
605	chr12	2729631	2729632	rs216013	18535201	Cooper GM	2008-06-05	Blood	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	12p13.33	CACNA1C	rs216013-?	NR	9E-7				Illumina [538629]	N
605	chr12	2749126	2749127	rs216026	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	12p13.33	CACNA1C	rs216026-T	0.21	8E-6		0.067	[0.038-0.096] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
606	chr12	2783971	2783972	rs2302729	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	12p13.33	CACNA1C	rs2302729-T	0.17	4E-6		0.17	[0.092-0.248] unit increase	Illumina [2380486] (imputed)	N
606	chr12	2788878	2788879	rs1051375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs1051375-G	0.287502	5E-9	(-20 ms)	0.0374477	[0.025-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
606	chr12	2788878	2788879	rs1051375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs1051375-G	0.287502	3E-11	(-22 ms)	0.0416902	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
606	chr12	2788878	2788879	rs1051375	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.33	CACNA1C	rs1051375-G	0.287502	2E-10	(-24 ms)	0.0406598	[0.028-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
606	chr12	2789220	2789221	rs3794288	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	12p13.33	CACNA1C	rs3794288-?	NR	6E-6		1.566	[0.92-2.21] unit decrease	Illumina [498648]	N
606	chr12	2798150	2798151	rs7956107	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p13.33	CACNA1C	rs7956107-G	NR	2E-6		0.20993906	[0.11-0.31] unit decrease	Illumina [> 6200000] (imputed)	N
606	chr12	2852181	2852182	rs141590856	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.33	NR	rs141590856-T	0.0122	3E-8	(S100A6)	0.109	NR unit increase	Illumina [1671387] (imputed)	N
606	chr12	2882543	2882544	rs10848704	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12p13.33	ENSG00000118975, FKBP4	rs10848704-C	0.35	2E-6	(TSH)	0.29	[NR] mIU/L decrease	Affymetrix [408775]	N
607	chr12	2908329	2908330	rs56196860	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	12p13.33	NR	rs56196860-C	0.97	2E-58		1.96	NR	NR [8853336] (imputed)	N
607	chr12	2908329	2908330	rs56196860	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	12p13.33	FKBP4	rs56196860-A	0.031	4E-12		1.263	[1.183-1.350]	Affymetrix [7871717] (imputed)	N
607	chr12	2908329	2908330	rs56196860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12p13.33	FKBP4, RP4-816N1.6, RP4-816N1.7	rs56196860-A	NR	4E-10		0.0556616	[0.038-0.073] unit decrease	Affymetrix [323858] (imputed)	N
607	chr12	2908329	2908330	rs56196860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12p13.33	FKBP4, RP4-816N1.6, RP4-816N1.7	rs56196860-A	NR	6E-10		0.0552938	[0.038-0.073] unit decrease	Affymetrix [127266] (imputed)	N
607	chr12	2908329	2908330	rs56196860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12p13.33	FKBP4, RP4-816N1.6, RP4-816N1.7	rs56196860-A	NR	2E-8		0.05134	[0.033-0.069] unit increase	Affymetrix [323858] (imputed)	N
607	chr12	2908329	2908330	rs56196860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p13.33	FKBP4, RP4-816N1.6, RP4-816N1.7	rs56196860-A	NR	5E-9		0.051313	[0.034-0.068] unit increase	Affymetrix [323123] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12p13.33	FKBP4	rs56196860-C	0.968802	1E-9		0.0343632	[0.023-0.045] unit decrease	Affymetrix [NR] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	12p13.33	NR	rs56196860-A	0.03140900000000002	7E-71		0.0644544	[0.057-0.072] unit increase	Affymetrix [16578495] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12p13.33	NR	rs56196860-C	0.968666	4E-12		0.0575327	[0.042-0.073] unit increase	Affymetrix [16580851] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12p13.33	NR	rs56196860-A	0.031501	5E-276		0.300859	[0.28-0.32] unit increase	Affymetrix [16577313] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.33	NR	rs56196860-A	0.031486000000000014	4E-24		0.0234832	[0.019-0.028] unit increase	Affymetrix [16582909] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p13.33	NR	rs56196860-A	0.03149999999999997	2E-15		0.0252378	[0.019-0.032] unit increase	Affymetrix [16582621] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.33	NR	rs56196860-A	0.031486000000000014	3E-14		0.0201379	[0.015-0.025] unit increase	Affymetrix [16582965] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p13.33	NR	rs56196860-A	0.03149999999999997	7E-11		0.0219327	[0.015-0.029] unit increase	Affymetrix [16582614] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	12p13.33	NR	rs56196860-A	0.031491999999999964	3E-18		0.0209011	[0.016-0.026] unit increase	Affymetrix [16582268] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12p13.33	NR	rs56196860-A	0.03146400000000005	5E-112		0.128389	[0.12-0.14] unit increase	Affymetrix [16583148] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12p13.33	NR	rs56196860-C	0.968553	1E-10		0.047541	[0.033-0.062] unit increase	Affymetrix [16585745] (imputed)	N
607	chr12	2908329	2908330	rs56196860	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	12p13.33	NR	rs56196860-A	0.03151599999999999	5E-310		0.321256	[0.3-0.34] unit increase	Affymetrix [16577424] (imputed)	N
607	chr12	2908329	2908330	rs56196860	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p13.33	NR	rs56196860-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12p13.33	FKBP4	rs56196860-A	0.0312	2E-6		0.0345	[0.02-0.049] unit decrease	Affymetrix [19819130] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12p13.33	FKBP4	rs56196860-A	0.0312	1E-14		0.0531	[0.04-0.067] unit decrease	Affymetrix [19819130] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12p13.33	FKBP4	rs56196860-A	0.0312	8E-11		0.0446	[0.031-0.058] unit decrease	Affymetrix [19819130] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p13.33		rs56196860-?	NR	9E-12				NR [~ 8900000] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.33		rs56196860-?	NR	2E-15				NR [~ 8900000] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.33		rs56196860-?	NR	1E-8				NR [~ 8900000] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12p13.33	NR	rs56196860-A	0.03	6E-10		0.0357	[0.024-0.047] unit decrease	NR [~ 27400000] (imputed)	N
607	chr12	2908329	2908330	rs56196860	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.33		rs56196860-?	NR	6E-9		0.0354551	[0.024-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
607	chr12	2955635	2955636	rs7139245	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	12p13.33	NR	rs7139245-G	NR	3E-8		0.157	[0.1-0.21] unit decrease	Illumina [6319684] (imputed)	N
607	chr12	2964683	2964684	rs11062386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs11062386-T	0.232802	4E-16				Affymetrix, Illumina [24246363] (imputed)	N
607	chr12	2964683	2964684	rs11062386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.33	NR	rs11062386-T	0.190999	2E-18		0.020579	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
607	chr12	2971223	2971224	rs11614061	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12p13.33	NR	rs11614061-A	0.03	1E-7		1.31	[1.21-1.41]	Illumina [8468885] (imputed)	N
607	chr12	2973546	2973547	rs28990715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.33		rs28990715-?	NR	1E-13				NR [~ 8900000] (imputed)	N
607	chr12	2973886	2973887	rs143532828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.33		rs143532828-A	0.007938	2E-8		0.0637169	[0.042-0.086] unit decrease	Illumina [13479295] (imputed)	N
607	chr12	2973886	2973887	rs143532828	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.33	FOXM1	rs143532828-?	NR	8E-10		0.098761916	[0.067-0.13] unit decrease	Illumina [27896057] (imputed)	N
607	chr12	2977953	2977954	rs28990703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	12p13.33	NR	rs28990703-G	NR	1E-23		0.0689	[0.055-0.082] unit increase	Affymetrix [9000000] (imputed)	N
607	chr12	2981901	2981902	rs7294943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.33		rs7294943-?	NR	3E-13				NR [~ 8900000] (imputed)	N
607	chr12	2986602	2986603	rs12582464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p13.33		rs12582464-C	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
607	chr12	2986602	2986603	rs12582464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p13.33		rs12582464-C	NR	1E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
607	chr12	2986602	2986603	rs12582464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs12582464-C	0.419636	1E-11				Affymetrix, Illumina [20825802] (imputed)	N
607	chr12	2995821	2995823	rs566549206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.33	TULP3, RHNO1	rs566549206-C	0.315256	1E-17		0.020742388	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr12	2995821	2995823	rs566549206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.33	TULP3, RHNO1	rs566549206-C	0.315175	1E-11		0.016661089	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr12	2995821	2995823	rs566549206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.33	TULP3, RHNO1	rs566549206-C	0.31538	1E-15		0.0186051	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr12	2995821	2995823	rs566549206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.33	TULP3, RHNO1	rs566549206-C	0.315368	5E-13		0.017367357	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr12	3020643	3020644	rs10848737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.33		rs10848737-?	NR	2E-9				NR [~ 8900000] (imputed)	N
608	chr12	3032037	3032037	rs3056925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.33		rs3056925-ATTTT	NR	4E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
608	chr12	3032037	3032037	rs3056925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12p13.33		rs3056925-ATTTT	NR	2E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
608	chr12	3123965	3123966	rs4759434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p13.33		rs4759434-?	NR	1E-12				NR [~ 8900000] (imputed)	N
608	chr12	3125647	3125648	rs10774095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.33	NR	rs10774095-A	0.8065329999999999	7E-9		0.00862445	[0.0055-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
609	chr12	3164335	3164337	rs201766116	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	12p13.33	NR	rs201766116-?	NR	4E-6		1.4873	NR	Illumina [at least 560000] (imputed)	N
609	chr12	3164922	3164923	rs12425451	23496005	Luca G	2013-03-18	J Sleep Res	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	12p13.33	TEAD4	rs12425451-?	NR	2E-7	(Age cataplexy onset)	6.7866	[NR] unit decrease	NR [NR]	N
609	chr12	3169492	3169493	rs12310617	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	12p13.33	NR	rs12310617-?	NR	2E-7				Affymetrix [NR]	N
609	chr12	3169492	3169493	rs12310617	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	12p13.33	NR	rs12310617-?	NR	2E-6				Affymetrix [NR]	N
609	chr12	3197678	3197679	rs183736659	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12p13.33	NR	rs183736659-?	NR	1E-9				Illumina [7760689] (imputed)	N
609	chr12	3207757	3207758	rs10744591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.33		rs10744591-?	NR	1E-14				NR [~ 8900000] (imputed)	N
609	chr12	3209493	3209494	rs10744592	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.33	TSPAN9	rs10744592-C	0.4128	6E-16		0.0151563	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
609	chr12	3212257	3212258	rs933414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.33		rs933414-?	NR	5E-9				NR [~ 8900000] (imputed)	N
609	chr12	3218583	3218584	rs61916264	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12p13.33	TSPAN9	rs61916264-G	0.165210841345083	1E-6		0.0035423	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
609	chr12	3229073	3229074	rs35244030	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.33	TSPAN9	rs35244030-A	0.1648	7E-22		0.0242	[0.019-0.029] unit increase	Affymetrix [18391927] (imputed)	N
609	chr12	3231715	3231716	rs7963344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.33	TSPAN9	rs7963344-T	0.166671	3E-9		0.017538488	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr12	3231715	3231716	rs7963344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.33		rs7963344-?	NR	3E-10				NR [~ 8900000] (imputed)	N
609	chr12	3231751	3231752	rs7980759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs7980759-G	0.172533	9E-10				Affymetrix, Illumina [24558453] (imputed)	N
609	chr12	3232200	3232201	rs513374	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.33	NR	rs513374-A	0.170667	9E-15				Affymetrix, Illumina [24332387] (imputed)	N
609	chr12	3235838	3235839	rs11062517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12p13.33	TSPAN9	rs11062517-T	0.6058	1E-18		0.03242294	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr12	3238141	3238142	rs34071646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p13.33	NR	rs34071646-G	0.168194	8E-11		0.01605	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
609	chr12	3239078	3239079	rs71458040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.33	NR	rs71458040-A	0.166922	9E-16		0.020023	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
609	chr12	3239166	3239167	rs489296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33	TSPAN9	rs489296-G	0.393215	4E-46		0.03570377	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
609	chr12	3245725	3245726	rs71458043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.33	TSPAN9	rs71458043-T	0.091432	5E-10		0.026256558	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
610	chr12	3287278	3287279	rs878962	23746317	Yamaguchi T	2013-05-23	Oral Dis	Genome-wide association study of degenerative bony changes of the temporomandibular joint.	Temporomandibular joint disorder	146 East Asian ancestry cases, 374 East Asian ancestry controls		12p13.33	TSPAN9	rs878962-C	NR	8E-6		1.89	[1.43-2.50]	Illumina [532935]	N
610	chr12	3296947	3296948	rs10848820	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	12p13.33	TSPAN9	rs10848820-?	NR	1E-7				Affymetrix, Illumina [~ 2600000] (imputed)	N
610	chr12	3327166	3327167	rs11062578	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	12p13.32	TSPAN9	rs11062578-?		3E-6				Illumina [859311]	N
610	chr12	3332284	3332285	rs41423644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs41423644-C	NR	6E-18		0.0391	[0.03-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
610	chr12	3332284	3332285	rs41423644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs41423644-C	NR	5E-19		0.0405	[0.032-0.049] unit increase	Affymetrix [9000000] (imputed)	N
610	chr12	3339808	3339809	rs3782812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12p13.32		rs3782812-G	NR	7E-10		0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
610	chr12	3340656	3340657	rs7976853	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12p13.32	TSPAN9	rs7976853-T	0.097	4E-8		5.48	z-score increase	Affymetrix [4314223] (imputed)	N
610	chr12	3341509	3341510	rs10848835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.32		rs10848835-?	NR	6E-12				NR [~ 8900000] (imputed)	N
610	chr12	3351168	3351169	rs74576293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs74576293-C	NR	9E-14		0.0311	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
610	chr12	3351168	3351169	rs74576293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs74576293-C	NR	1E-14		0.0323	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
610	chr12	3352542	3352543	rs4765723	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	12p13.32	TSPAN9	rs4765723-C	NR	8E-6		0.19597	NR unit increase	NR [560698] (imputed)	N
610	chr12	3357991	3357992	rs3782788	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	12p13.32	NR	rs3782788-?	NR	9E-6		0.8059	[0.48-1.13] unit increase	Affymetrix [7154205] (imputed)	N
610	chr12	3358260	3358261	rs3782787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	12p13.32		rs3782787-G	0.250975	4E-12		0.0229306	[0.016-0.029] unit increase	Illumina [13478778] (imputed)	N
610	chr12	3358260	3358261	rs3782787	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12p13.32	TSPAN9	rs3782787-?	NR	7E-10		0.02629	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
610	chr12	3358260	3358261	rs3782787	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	12p13.32	TSPAN9	rs3782787-?	NR	7E-11		0.02715	[0.019-0.035] unit increase novel	Illumina [6108953] (imputed)	N
610	chr12	3364694	3364695	rs1860385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12p13.32	TSPAN9	rs1860385-C	NR	2E-11		0.0208494	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
610	chr12	3364694	3364695	rs1860385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12p13.32	TSPAN9	rs1860385-C	NR	2E-11		0.0209619	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
610	chr12	3368092	3368093	rs10491967	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	12p13.32	TSPAN9	rs10491967-A	NR	2E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
610	chr12	3368092	3368093	rs10491967	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	12p13.32	TSPAN9	rs10491967-A	0.11	5E-14	(EA)	0.0095	[0.007-0.012] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
610	chr12	3371230	3371231	rs3782774	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12p13.32	TSPAN9	rs3782774-A	0.5209	1E-6		0.0317	[0.019-0.044] unit decrease	NR [8041861] (imputed)	N
610	chr12	3373822	3373823	rs74891390	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12p13.32	TSPAN9	rs74891390-C	0.06	5E-15		0.03	unit increase	Affymetrix [8928767] (imputed)	N
610	chr12	3382562	3382563	rs479105	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	12p13.32	PRMT8	rs479105-T	NR	1E-8	(Bacilli class)	0.22	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
610	chr12	3387280	3387281	rs650180	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12p13.32	NR	rs650180-T	0.395	8E-8		0.0098	[0.0063-0.0133] unit decrease	NR [~ 27400000] (imputed)	N
610	chr12	3387696	3387697	rs16930370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p13.32		rs16930370-C	NR	3E-33		0.0262	[0.022-0.031] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
610	chr12	3387696	3387697	rs16930370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs16930370-C	0.168441	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
610	chr12	3387696	3387697	rs16930370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs16930370-C	0.171157	7E-14				Affymetrix, Illumina [23114412] (imputed)	N
610	chr12	3387696	3387697	rs16930370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12p13.32	NR	rs16930370-C	0.17337	2E-13		0.018955	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
610	chr12	3387696	3387697	rs16930370	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12p13.32	TSPAN9	rs16930370-T	0.8222	2E-19	(EA)	0.0041	[0.0031-0.0051] unit increase	Affymetrix [NR] (imputed)	N
610	chr12	3387696	3387697	rs16930370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.32		rs16930370-?	NR	3E-17				NR [~ 8900000] (imputed)	N
610	chr12	3388003	3388004	rs544668	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12p13.32	NR	rs544668-T	0.6	4E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix [2446094] (imputed)	N
610	chr12	3388003	3388004	rs544668	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12p13.32	NR	rs544668-T	0.6	5E-8				Affymetrix [2446094] (imputed)	N
610	chr12	3388521	3388522	rs78278054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.32	TSPAN9	rs78278054-C	0.0579380000000001	1E-21		0.04649622	[0.037-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr12	3388712	3388713	rs73048966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.32	TSPAN9	rs73048966-A	0.061906	2E-9		0.028113535	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
610	chr12	3388931	3388932	rs12580347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12p13.32	TSPAN9	rs12580347-T	NR	1E-8		0.0179304	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
610	chr12	3388931	3388932	rs12580347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p13.32	NR	rs12580347-C	0.583362	3E-10		0.011894	[0.0082-0.0156] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
610	chr12	3388931	3388932	rs12580347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p13.32		rs12580347-?	NR	5E-8				NR [~ 8900000] (imputed)	N
610	chr12	3391161	3391162	rs73048979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs73048979-T	NR	1E-19		0.0669	[0.052-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
610	chr12	3391161	3391162	rs73048979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p13.32	NR	rs73048979-T	NR	3E-20		0.0681	[0.054-0.083] unit increase	Affymetrix [9000000] (imputed)	N
610	chr12	3392350	3392351	rs632887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.32	TSPAN9	rs632887-G	0.409519	3E-11		0.015092238	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
610	chr12	3392350	3392351	rs632887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12p13.32	TSPAN9	rs632887-G	0.40949	8E-12		0.015560975	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
610	chr12	3392350	3392351	rs632887	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12p13.32	TSPAN9	rs632887-A	0.6157	8E-29		0.0032	[0.0026-0.0038] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
610	chr12	3392350	3392351	rs632887	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12p13.32	TSPAN9	rs632887-A	0.5933	1E-24		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
610	chr12	3392350	3392351	rs632887	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	12p13.32	TSPAN9	rs632887-A	0.7171	9E-6		0.0033	[0.0019-0.0047] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
610	chr12	3392350	3392351	rs632887	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12p13.32	TSPAN9	rs632887-G	0.35	5E-20		9.155	NR z score decrease	Illumina [26237160] (imputed)	N
610	chr12	3392350	3392351	rs632887	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	12p13.32	TSPAN9	rs632887-G	0.331	4E-9		0.317	[0.13-0.5] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
610	chr12	3393099	3393100	rs67551338	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.32	TSPAN9	rs67551338-T	0.0615	2E-55		0.0617	[0.054-0.069] unit increase	Affymetrix [18391927] (imputed)	N
610	chr12	3393099	3393100	rs67551338	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		12p13.32	TSPAN9	rs67551338-T	NR	2E-9		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
610	chr12	3397403	3397404	rs77563142	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	12p13.32	TSPAN9	rs77563142-G		2E-6		1.277	[1.154-1.413]	Illumina [4498586] (imputed)	N
611	chr12	3408026	3408027	rs55878006	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	12p13.32	AK056228	rs55878006-A	0.133	6E-9		0.46	[0.31-0.61] unit decrease	Affymetrix [NR] (imputed)	N
611	chr12	3408026	3408027	rs55878006	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12p13.32	AK056228	rs55878006-A	0.131	3E-11		0.0036	[0.0026-0.0046] unit decrease	Affymetrix [NR] (imputed)	N
611	chr12	3411974	3411975	rs372224065	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.32	AC005865.2	rs372224065-C	0.9375	2E-9		0.0292	[0.02-0.039] unit decrease	Affymetrix [18391927] (imputed)	N
611	chr12	3425706	3425707	rs10744602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	12p13.32		rs10744602-C	0.176241	9E-9		0.026878	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
611	chr12	3507479	3507480	rs79345814	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	12p13.32		rs79345814-A	NR	5E-6		0.029	[0.017-0.041] unit increase	NR [7831927]	N
612	chr12	3541942	3541943	rs768398	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	12p13.32	PRMT8	rs768398-?	NR	5E-6				Illumina [NR] (imputed)	N
612	chr12	3541942	3541943	rs768398	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12p13.32	PRMT8	rs768398-?	NR	3E-6		3.333333	[2.08-7.14]	Illumina [NR] (imputed)	N
612	chr12	3544419	3544420	rs61909487	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	12p13.32		rs61909487-C	NR	8E-6	(GLM)	0.6787	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
612	chr12	3570020	3570021	rs568331886	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	12p13.32	PRMT8	rs568331886-A		4E-7		0.586	[NR] unit increase	Illumina [24111857] (imputed)	N
612	chr12	3665839	3665840	rs34330476	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	12p13.32	NR	rs34330476-?	NR	1E-8	(Eggerthella_sinensis)	0.385467	[0.26-0.51] unit increase	Illumina [5293637] (imputed)	N
613	chr12	3672718	3672719	rs17769758	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	12p13.32	Intergenic	rs17769758-A		4E-6		0.049	[0.028-0.069] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
613	chr12	3739093	3739094	rs10744620	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	12p13.32	NR	rs10744620-C		1E-6		0.0788	[0.047-0.11] SD units decrease	NR [10700000] (imputed)	N
613	chr12	3745301	3745302	rs12370646	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CRACR2A	rs12370646-?	NR	3E-8	(female)	1.43585	[NR] unit increase	Affymetrix [NR] (imputed)	N
613	chr12	3750127	3750128	rs4766152	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	12p13.32	EFCAB4B	rs4766152-G	0.44	5E-6		0.223	[0.13-0.32] unit decrease	Illumina [546677]	N
613	chr12	3757547	3757548	rs887304	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	12p13.32	EFCAB4B	rs887304-A	0.31	8E-7		0.36	[NR] unit increase	Illumina [324623]	N
613	chr12	3788259	3788260	rs242016	30284742	Bevilacqua L	2018-10-04	J Periodontal Res	A genome-wide association study identifies an association between variants in EFCAB4B gene and periodontal disease in an Italian isolated population.	Chronic periodontitis (localised)	207 Friuli Venezia Giulia (founder/genetic isolate) cases, 160 Friuli Venezia Giulia (founder/genetic isolate) controls	NA	12p13.32	EFCAB4B	rs242016-A	0.21	2E-8		3.7	[2.32-6.29]	Illumina [NR] (imputed)	N
614	chr12	3814237	3814238	rs10848911	19478329	Aston KI	2009-05-28	J Androl	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	12p13.32	EFCAB4B	rs10848911-?	0.11	4E-6	(azoospermia)			Illumina [314776]	N
614	chr12	3853328	3853329	rs10848918	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	12p13.32	NR	rs10848918-?	NR	7E-6		0.11454327	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
614	chr12	3868167	3868168	rs10744625	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	12p13.32	EFCAB4B, PARP11	rs10744625-C	0.188	9E-6	(Carbohydrate)			Affymetrix [590000]	N
614	chr12	3868167	3868168	rs10744625	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	12p13.32	EFCAB4B, PARP11	rs10744625-C	0.188	8E-6	(Carbohydrate)			Affymetrix [590000]	N
614	chr12	3877126	3877127	rs35021047	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p13.32	NR	rs35021047-?		5E-6				Illumina [4322238] (imputed)	N
614	chr12	3913426	3913427	rs2058350	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	12p13.32	PARP11	rs2058350-?	NR	8E-6	(PC1)			Illumina [up to 563855]	N
614	chr12	3925425	3925426	rs56793596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.32		rs56793596-?	NR	1E-13				NR [~ 8900000] (imputed)	N
614	chr12	3929032	3929033	rs67009183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.32	PARP11	rs67009183-A	0.129859	8E-11		0.021424608	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr12	3955953	3955954	rs55633163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.32	PARP11	rs55633163-C	0.130177	2E-9		0.0208838	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr12	3987472	3987473	rs2109112	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	12p13.32	PARP11	rs2109112-T	NR	4E-6		1.7	[1.36-2.13]	Illumina [2777520] (imputed)	N
615	chr12	4005022	4005023	rs10774183	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12p13.32	MAP3K1, SETD9, MIER3	rs10774183-?		6E-10				NR [7428630] (imputed)	N
615	chr12	4005022	4005023	rs10774183	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p13.32	NR	rs10774183-?		4E-8				NR [7428630] (imputed)	N
615	chr12	4005221	4005222	rs11062908	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.32	NR	rs11062908-?	NR	3E-17	(right amygdala)			NR [9227495] (imputed)	N
615	chr12	4005221	4005222	rs11062908	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.32	NR	rs11062908-?	NR	2E-16	(left amygdala)			NR [9227495] (imputed)	N
615	chr12	4006793	4006794	rs117213754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12p13.32		rs117213754-A	NR	3E-24		0.1036	[0.084-0.124] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
615	chr12	4006793	4006794	rs117213754	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12p13.32	NR	rs117213754-A	0.01472	4E-19		0.00825	[0.0064-0.0101] unit increase	Affymetrix [NR] (imputed)	N
615	chr12	4006793	4006794	rs117213754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12p13.32	NR	rs117213754-A	NR	9E-24		0.1044	[0.084-0.125] unit increase	Affymetrix [9000000] (imputed)	N
615	chr12	4006966	4006967	rs4766188	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.32	NR	rs4766188-?	NR	1E-11	(right amygdala)			NR [9227495] (imputed)	N
615	chr12	4007897	4007898	rs1419859	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12p13.32	SH3RF3	rs1419859-?		3E-12				NR [7428630] (imputed)	N
615	chr12	4007897	4007898	rs1419859	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12p13.32	TBC1D5	rs1419859-?		7E-12				NR [7428630] (imputed)	N
615	chr12	4007897	4007898	rs1419859	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	12p13.32	PARP11	rs1419859-T	NR	1E-9		35.6	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr12	4007897	4007898	rs1419859	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA4 volume	21,297 European ancestry individuals	NA	12p13.32		rs1419859-T	NR	7E-10		3.27	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr12	4007897	4007898	rs1419859	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume	21,297 European ancestry individuals	NA	12p13.32		rs1419859-T	NR	2E-9		6.47	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr12	4007897	4007898	rs1419859	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume	21,297 European ancestry individuals	NA	12p13.32		rs1419859-T	NR	3E-10		3.86	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
615	chr12	4008203	4008204	rs10848954	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.32	NR	rs10848954-?	NR	7E-10	(left amygdala)			NR [9227495] (imputed)	N
615	chr12	4027685	4027686	rs74398913	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	12p13.32	NR	rs74398913-G	NR	3E-6		0.098	[0.057-0.139] unit increase	Illumina [6319684] (imputed)	N
615	chr12	4031103	4031104	rs10848958	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs10848958-C	0.8039	2E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr12	4033759	4033760	rs74431741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.32		rs74431741-?	NR	9E-24				NR [~ 8900000] (imputed)	N
616	chr12	4071237	4071238	rs622513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.32		rs622513-A	0.551443	3E-13		0.01640027	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
616	chr12	4071237	4071238	rs622513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.32		rs622513-A	0.551389	8E-11		0.014780017	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
616	chr12	4071237	4071238	rs622513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.32		rs622513-A	0.551238	4E-15		0.017838182	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr12	4071237	4071238	rs622513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.32		rs622513-A	0.551272	2E-14		0.017534755	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr12	4071237	4071238	rs622513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.32		rs622513-A	0.551398	2E-16		0.0188964	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr12	4071900	4071901	rs609018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.32		rs609018-G	0.433815	7E-16		0.018005189	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
616	chr12	4071900	4071901	rs609018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.32		rs609018-G	0.433872	1E-10		0.014270792	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr12	4071900	4071901	rs609018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.32		rs609018-?	NR	3E-10				NR [~ 8900000] (imputed)	N
616	chr12	4071900	4071901	rs609018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.32		rs609018-?	NR	1E-16				NR [~ 8900000] (imputed)	N
616	chr12	4071900	4071901	rs609018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12p13.32		rs609018-?	NR	7E-9				NR [~ 8900000] (imputed)	N
616	chr12	4106907	4106908	rs73051414	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	12p13.32	CRACR2A, THCAT155	rs73051414-A	0.056	4E-6		1.805	[1.403 - 2.323]	Illumina [5398302] (imputed)	N
616	chr12	4118316	4118317	rs4238010	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	12p13.32	intergenic	rs4238010-G	0.04	4E-6	(female)	1.48	[0.85-2.11] unit increase	Illumina [6380737] (imputed)	N
616	chr12	4118316	4118317	rs4238010	19107115	Muglia P	2008-12-23	Mol Psychiatry	Genome-wide association study of recurrent major depressive disorder in two European case-control cohorts.	Major depressive disorder	1,359 European ancestry cases, 1,782 European ancestry controls	NA	12p13.32	CCND2	rs4238010-G	0.02	6E-6		1.72		Affymetrix, Illumina [494678] (imputed)	N
616	chr12	4122179	4122179	rs751370420	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	12p13.32	PARP11	rs751370420-?	NR	2E-11		0.0582	NR % decrease	Affymetrix [9390170] (imputed)	N
616	chr12	4140875	4140876	rs2540119	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12p13.32	PARP11	rs2540119-T	0.544	4E-8		1.086	[1.06-1.12]	Illumina [11270530] (imputed)	N
616	chr12	4150134	4150135	rs11062980	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	12p13.32	PARP11	rs11062980-A	0.44	4E-6		2.3	[1.32-3.28] unit decrease	Illumina [629414]	N
616	chr12	4173125	4173126	rs11062987	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12p13.32	Intergenic	rs11062987-A	NR	7E-7	(between families)	4.964	unit decrease	Affymetrix [up to 15107142] (imputed)	N
617	chr12	4243748	4243749	rs12811814	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12p13.32	CCND2-AS1	rs12811814-T	0.4576	8E-7		0.0126	[0.0075-0.0177] unit increase	Affymetrix [19819130] (imputed)	N
617	chr12	4243748	4243749	rs12811814	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12p13.32	CCND2-AS1	rs12811814-T	0.4576	1E-7		0.0126	[0.0079-0.0173] unit increase	Affymetrix [19819130] (imputed)	N
617	chr12	4243748	4243749	rs12811814	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12p13.32	CCND2-AS1	rs12811814-T	0.4576	3E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [19819130] (imputed)	N
617	chr12	4268730	4268731	rs113469106	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	12p13.32	CCND2	rs113469106-A	0.057	9E-9		0.0505	[0.033-0.068] unit increase	Illumina [~ 250000] (imputed)	N
617	chr12	4289090	4289091	rs61910828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p13.32		rs61910828-A	0.079092413	3E-10		0.10984295	[0.076-0.144] unit decrease	Illumina [13429769] (imputed)	N
617	chr12	4289090	4289091	rs61910828	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12p13.32		rs61910828-A	0.078016408	1E-9		0.90669537	[0.878354686-0.935950435]	Illumina [8919992] (imputed)	N
617	chr12	4290248	4290249	rs4766214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12p13.32		rs4766214-A	0.543238	7E-10		0.0255143	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
617	chr12	4292861	4292862	rs10849004	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	12p13.32	CCND2	rs10849004-C	0.819	6E-6				Affymetrix, Illumina [NR] (imputed)	N
617	chr12	4300171	4300172	rs11063028	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs11063028-C	0.18	9E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
617	chr12	4301875	4301876	rs10849008	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12p13.32		rs10849008-T	0.618825	2E-12		0.0300893	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
617	chr12	4305882	4305883	rs12827476	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.32	CCND2	rs12827476-A	0.452	9E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
617	chr12	4316170	4316171	rs75616205	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p13.32	NR	rs75616205-?	NR	4E-13		0.52479	[0.38-0.67] unit increase	Affymetrix [7794483] (imputed)	N
617	chr12	4316170	4316171	rs75616205	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p13.32	NR	rs75616205-?	NR	1E-10	(male)	0.73094	[0.51-0.95] unit increase	Affymetrix [7794483] (imputed)	N
617	chr12	4317562	4317563	rs3764032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12p13.32		rs3764032-?	NR	8E-25				NR [~ 8900000] (imputed)	N
617	chr12	4317562	4317563	rs3764032	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	12p13.32	CCND2	rs3764032-?	NR	2E-9		1.1745361	NR	Affymetrix [9154080] (imputed)	N
617	chr12	4317562	4317563	rs3764032	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12p13.32	CCND2	rs3764032-?	NR	4E-8		1.112347	NR	Affymetrix [9154080] (imputed)	N
617	chr12	4318722	4318723	rs12820863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12p13.32		rs12820863-T	NR	2E-18		0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
617	chr12	4318722	4318723	rs12820863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.32		rs12820863-T	0.35103	5E-20		0.021920718	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
617	chr12	4318722	4318723	rs12820863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.32		rs12820863-T	0.351048	3E-26		0.025348522	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
617	chr12	4318722	4318723	rs12820863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12p13.32	NR	rs12820863-T	0.351578	1E-25		0.022466	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
617	chr12	4318722	4318723	rs12820863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12p13.32		rs12820863-?	NR	5E-22				NR [~ 8900000] (imputed)	N
617	chr12	4318722	4318723	rs12820863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	12p13.32	intergenic	rs12820863-T	0.3521	9E-11		0.02513112	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr12	4318722	4318723	rs12820863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12p13.32	intergenic	rs12820863-T	0.352	4E-9		0.02283322	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
617	chr12	4324942	4324943	rs7972908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	12p13.32		rs7972908-G	0.381402	1E-8		0.0199526	[0.013-0.027] unit increase	Illumina [13479091] (imputed)	N
618	chr12	4328520	4328521	rs117233107	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	12p13.32	CCND2	rs117233107-?	NR	1E-9		0.0063	[0.0039-0.0087] unit decrease	Affymetrix [21347608] (imputed)	N
618	chr12	4328520	4328521	rs117233107	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	12p13.32	CCND2	rs117233107-?	NR	5E-10		0.0109	[0.0072-0.0146] unit decrease	Affymetrix [21347608] (imputed)	N
618	chr12	4328520	4328521	rs117233107	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12p13.32	CCND2-AS1	rs117233107-A	0.0177	8E-11		0.047	[0.033-0.061] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
618	chr12	4328520	4328521	rs117233107	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p13.32	NR	rs117233107-G	0.9833	4E-55		0.3251	[0.28-0.37] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
618	chr12	4330068	4330070	rs10592192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p13.32		rs10592192-T	NR	9E-13		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
618	chr12	4330068	4330070	rs10592192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.32		rs10592192-T	0.21247	2E-14		0.020924177	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4330068	4330070	rs10592192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.32		rs10592192-T	0.212465	4E-13		0.019873902	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4330068	4330070	rs10592192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p13.32		rs10592192-T	0.212397	1E-15		0.02163442	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4330214	4330215	rs4573764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.32		rs4573764-T	NR	2E-23		0.0228	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
618	chr12	4330214	4330215	rs4573764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12p13.32		rs4573764-T	0.374552	8E-33		0.0405581	[0.034-0.047] unit decrease	Illumina [13479135] (imputed)	N
618	chr12	4330214	4330215	rs4573764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12p13.32		rs4573764-T	NR	5E-16		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
618	chr12	4330214	4330215	rs4573764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	12p13.32		rs4573764-T	0.374323	1E-9		0.0207439	[0.014-0.027] unit decrease	Illumina [13478961] (imputed)	N
618	chr12	4330214	4330215	rs4573764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	12p13.32	NR	rs4573764-C	0.668954	2E-27		0.046721	[0.038-0.055] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
618	chr12	4330214	4330215	rs4573764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs4573764-T	0.227536	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
618	chr12	4330507	4330507	rs36029372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12p13.32		rs36029372-GA	NR	5E-103		0.0434	[0.039-0.047] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
618	chr12	4330507	4330507	rs36029372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12p13.32		rs36029372-GA	NR	5E-20		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
618	chr12	4330507	4330507	rs36029372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.32		rs36029372-GA	0.211831	5E-83		0.052747417	[0.047-0.058] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4330507	4330507	rs36029372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.32		rs36029372-GA	0.211723	1E-101		0.05889999	[0.054-0.064] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4330507	4330507	rs36029372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12p13.32		rs36029372-GA	0.2118	4E-10		0.0163571	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4330507	4330507	rs36029372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12p13.32		rs36029372-GA	0.211827	5E-22		0.026112333	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4331068	4331068	rs536350318	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12p13.32		rs536350318-C	0.788	1E-81		0.26	[-0.28--0.23] % decrease	Affymetrix [NR] (imputed)	N
618	chr12	4331068	4331068	rs536350318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.32		rs536350318-CTT	0.211172	6E-109		0.06003763	[0.055-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4331068	4331068	rs536350318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.32		rs536350318-CTT	0.211229	2E-123		0.0642142	[0.059-0.069] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4331068	4331068	rs536350318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.32		rs536350318-CTT	0.211231	5E-120		0.06314516	[0.058-0.068] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.23348	2E-183				Affymetrix, Illumina [24332387] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.212037	2E-154		0.059828	[0.055-0.064] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.232854	6E-23				Affymetrix, Illumina [24653286] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.212068	1E-20		0.021064	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.23292	2E-37				Affymetrix, Illumina [24558453] (imputed)	N
618	chr12	4331203	4331204	rs11615482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p13.32	NR	rs11615482-A	0.21199	6E-31		0.026135	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
618	chr12	4331203	4331204	rs11615482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.32		rs11615482-?	NR	4E-117				NR [~ 8900000] (imputed)	N
618	chr12	4331271	4331272	rs11611397	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12p13.32		rs11611397-T	NR	1E-10		0.02	[0.02-0.02] unit decrease	Illumina [92652022]	N
618	chr12	4331271	4331272	rs11611397	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12p13.32		rs11611397-T	NR	5E-12		0.3	[0.22-0.38] unit increase	Illumina [97506867]	N
618	chr12	4331271	4331272	rs11611397	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12p13.32		rs11611397-T	NR	2E-9		0.1	[0.061-0.139] unit increase	Illumina [94681438]	N
618	chr12	4331271	4331272	rs11611397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12p13.32	intergenic	rs11611397-T	0.2119	3E-53		0.06637744	[0.058-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4331271	4331272	rs11611397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12p13.32	intergenic	rs11611397-T	0.212	6E-55		0.0676497	[0.059-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4331646	4331647	rs12320749	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	12p13.32		rs12320749-?	0.2254	2E-10		0.0219	[0.015-0.029] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr12	4331646	4331647	rs12320749	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	12p13.32		rs12320749-?	0.2275	9E-7		0.0253	[0.015-0.035] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr12	4331646	4331647	rs12320749	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	12p13.32		rs12320749-?	0.2254	7E-7		0.2248	[0.14-0.31] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.223998	9E-24				Affymetrix, Illumina [23114412] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.210147	2E-24		0.024062	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.225534	7E-26				Affymetrix, Illumina [23467995] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.210195	1E-25		0.024066	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.231837	2E-13				Affymetrix, Illumina [21126107] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.210209	4E-11		0.01624	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
618	chr12	4332008	4332009	rs10849020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849020-G	0.226426	8E-26				Affymetrix, Illumina [19872809] (imputed)	N
618	chr12	4332008	4332009	rs10849020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.32		rs10849020-?	NR	3E-139				NR [~ 8900000] (imputed)	N
618	chr12	4332008	4332009	rs10849020	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12p13.32	intergenic	rs10849020-G	0.2089	5E-42		0.05941428	[0.051-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.32		rs10849022-A	0.209951	6E-13		0.019698387	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.32		rs10849022-A	0.20997	1E-26		0.029223954	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849022-A	0.229317	3E-200				Affymetrix, Illumina [24246363] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.32	NR	rs10849022-A	0.21005	1E-176		0.063053	[0.059-0.067] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs10849022-A	0.231076	2E-180				Affymetrix, Illumina [20825802] (imputed)	N
618	chr12	4332261	4332262	rs10849022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.32	NR	rs10849022-A	0.210273	6E-155		0.062576	[0.058-0.067] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
618	chr12	4332350	4332351	rs10774209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p13.32		rs10774209-G	NR	4E-18		0.0213	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
618	chr12	4332477	4332478	rs10849023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.32	NR	rs10849023-T	0.209777	4E-19		0.020041	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
618	chr12	4332477	4332478	rs10849023	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	12p13.32	CCND2	rs10849023-?	NR	3E-11				NR [2500000] (imputed)	N
618	chr12	4332477	4332478	rs10849023	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	12p13.32	CCND2	rs10849023-?	NR	1E-8				NR [2500000] (imputed)	N
618	chr12	4332477	4332478	rs10849023	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	12p13.32	CCND2	rs10849023-?	NR	1E-8				NR [2500000] (imputed)	N
618	chr12	4332477	4332478	rs10849023	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12p13.32	CCND2	rs10849023-C	0.79	8E-12	(EA, MCH)	0.008	[-0.00180-0.01780] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
618	chr12	4333158	4333159	rs7955734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.32	NR	rs7955734-G	0.209992	1E-24		0.027759172	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4333158	4333159	rs7955734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12p13.32		rs7955734-G	0.210029	5E-18		0.023534833	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4333158	4333159	rs7955734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs7955734-G	0.23172	7E-41				Affymetrix, Illumina [24649327] (imputed)	N
618	chr12	4333158	4333159	rs7955734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p13.32	NR	rs7955734-G	0.209901	2E-37		0.028838	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
618	chr12	4333158	4333159	rs7955734	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.32	NR	rs7955734-G	0.21005	3E-12		0.016188	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
618	chr12	4333158	4333159	rs7955734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.32		rs7955734-?	NR	1E-24				NR [~ 8900000] (imputed)	N
618	chr12	4333158	4333159	rs7955734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	12p13.32	PARP11, CCND2-AS1	rs7955734-?	NR	5E-28		0.04824	[0.04-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
618	chr12	4333158	4333159	rs7955734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	12p13.32	PARP11, CCND2-AS1	rs7955734-?	NR	1E-29		0.04971	[0.041-0.058] unit increase novel	Illumina [6108953] (imputed)	N
618	chr12	4333158	4333159	rs7955734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	12p13.32	PARP11, CCND2-AS1	rs7955734-?	NR	1E-26		0.04703	[0.038-0.056] unit increase novel	Illumina [6108953] (imputed)	N
618	chr12	4333158	4333159	rs7955734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	12p13.32	PARP11, CCND2-AS1	rs7955734-?	NR	1E-9		0.02671	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
618	chr12	4333918	4333919	rs11611647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.32		rs11611647-C	NR	1E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
618	chr12	4333918	4333919	rs11611647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p13.32		rs11611647-C	NR	3E-116		0.0536	[0.049-0.058] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
618	chr12	4333918	4333919	rs11611647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12p13.32		rs11611647-C	0.363298	1E-34		0.048311	[0.041-0.056] unit increase	Illumina [13476266] (imputed)	N
618	chr12	4333918	4333919	rs11611647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p13.32		rs11611647-C	NR	2E-117		0.054	[0.049-0.059] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
618	chr12	4333918	4333919	rs11611647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	12p13.32		rs11611647-C	0.363313	2E-35		0.0493303	[0.042-0.057] unit increase	Illumina [13476299] (imputed)	N
618	chr12	4333918	4333919	rs11611647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	12p13.32	NR	rs11611647-T	0.677973	1E-26		0.052232	[0.043-0.062] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
618	chr12	4333918	4333919	rs11611647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	12p13.32	NR	rs11611647-T	0.67799	7E-29		0.054762	[0.045-0.064] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
618	chr12	4333918	4333919	rs11611647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12p13.32	intergenic	rs11611647-C	0.2092	5E-9		0.02560299	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4333918	4333919	rs11611647	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	12p13.32	CCND2	rs11611647-C	0.37	6E-9		0.071	[0.047-0.095] unit decrease	Illumina [561583]	N
618	chr12	4334294	4334295	rs7309743	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12p13.32		rs7309743-A	0.79	7E-9				Affymetrix [10369434] (imputed)	N
618	chr12	4334294	4334295	rs7309743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.32		rs7309743-G	0.210384	2E-19		0.024549862	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4334294	4334295	rs7309743	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	12p13.32	CCND2	rs7309743-A	NR	1E-7	(Asian)	0.0066	[0.0042-0.009] unit increase	NR [2500000] (imputed)	N
618	chr12	4334294	4334295	rs7309743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12p13.32	intergenic	rs7309743-G	0.2102	2E-9		0.02672119	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4334307	4334308	rs7138216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12p13.32		rs7138216-C	0.210153	3E-12		0.019170841	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
618	chr12	4334307	4334308	rs7138216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.32	NR	rs7138216-C	0.23146	3E-19				Affymetrix, Illumina [24588908] (imputed)	N
618	chr12	4334307	4334308	rs7138216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12p13.32	intergenic	rs7138216-C	0.2089	2E-11		0.02940163	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr12	4350289	4350290	rs61909191	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	12p13.32	NR	rs61909191-A	0.9342475	3E-6		1.0752687	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
618	chr12	4358077	4358078	rs143750586	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12p13.32	PARP11, CCND2	rs143750586-A		1E-8		1.038	unit increase	Affymetrix [at least 2696785] (imputed)	N
618	chr12	4364209	4364209	rs11370360	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.32	CCND2-AS1	rs11370360-CA	0.7115	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix [18391927] (imputed)	N
618	chr12	4364519	4364521	rs150661405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.32		rs150661405-C	0.318327	7E-9		0.0132765	[0.0088-0.0178] unit decrease	Illumina [13479295] (imputed)	N
618	chr12	4365548	4365549	rs4572213	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	12p13.32	NR	rs4572213-T	NR	2E-9		1.1248593	[1.08-1.17]	Illumina [6774630] (imputed)	N
618	chr12	4365571	4365572	rs74862545	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	L1-L4 bone mineral density x gut microbiota (genus Escherichia Shigella) interaction	2,293 European ancestry individuals	NA	12p13.32		rs74862545-?	NR	2E-8				Affymetrix [509886] (imputed)	N
618	chr12	4368351	4368352	rs10774214	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	12p13.32	CCND2	rs10774214-T	0.4	3E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
618	chr12	4368351	4368352	rs10774214	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	12p13.32	NR	rs10774214-T	0.37	1E-10		1.14	[1.09-1.18]	Affymetrix, Illumina [~ 4000000] (imputed)	N
618	chr12	4368351	4368352	rs10774214	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	12p13.32	CCND2	rs10774214-T	0.37	1E-10	(East Asian)	1.14	[1.09-1.18]	Affymetrix, Illumina [2400000] (imputed)	N
618	chr12	4368351	4368352	rs10774214	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	12p13.32	C12orf5, CCND2, FGF6, RAD51AP1, FGF23, PARP11	rs10774214-T	0.379	3E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [1636380] (imputed)	N
618	chr12	4368351	4368352	rs10774214	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	12p13.32	C12orf5, CCND2, FGF6, RAD51AP1, FGF23, PARP11	rs10774214-T	0.352	5E-10	(East Asian)	1.17	[1.11-1.23]	Affymetrix, Illumina [1636380] (imputed)	N
618	chr12	4368606	4368607	rs35808169	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12p13.32	CCND2	rs35808169-C	0.1721	2E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
618	chr12	4374372	4374373	rs11063069	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12p13.32	CCND2	rs11063069-G	0.2018	3E-8		0.064	[0.04-0.088] unit increase	Affymetrix, Illumina [NR] (imputed)	N
618	chr12	4374372	4374373	rs11063069	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12p13.32	CCND2	rs11063069-G	0.2018	2E-8	(EA)	0.0736	[0.048-0.099] unit increase	Affymetrix, Illumina [NR] (imputed)	N
618	chr12	4374372	4374373	rs11063069	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12p13.32	CCND2	rs11063069-G	NR	1E-9	(men)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
618	chr12	4374372	4374373	rs11063069	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12p13.32	CCND2	rs11063069-G	0.214449806025106	3E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
618	chr12	4376088	4376089	rs4238013	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs4238013-C	0.2087	3E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
618	chr12	4376090	4376091	rs12818766	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12p13.32	CCND2	rs12818766-A	NR	2E-19	(East Asian)	1.16	[1.12-1.19]	Affymetrix, Illumina [up to 47000000] (imputed)	N
618	chr12	4376090	4376091	rs12818766	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12p13.32	NR	rs12818766-A	0.18	2E-9		1.1	[1.07-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
618	chr12	4378745	4378745	rs71061176	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.32	CCND2-AS1	rs71061176-?	NR	8E-10		0.0198805	[0.014-0.026] unit decrease	Illumina [27896057] (imputed)	N
618	chr12	4379830	4379831	rs12822620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	12p13.32		rs12822620-T	0.306464895	2E-9		0.120786496	[0.081-0.16] unit increase	Illumina [13428297] (imputed)	N
618	chr12	4379830	4379831	rs12822620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	12p13.32		rs12822620-T	NR	3E-12		0.1137	[0.082-0.146] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
618	chr12	4379830	4379831	rs12822620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.32	CCND2-AS1, CCND2-AS2	rs12822620-T	0.173098	5E-9		0.018078644	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr12	4381980	4381981	rs7304270	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12p13.32	CCND2	rs7304270-C	0.761	1E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
618	chr12	4384695	4384696	rs3217792	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	12p13.32	RP11-264F23.3	rs3217792-T	0.0776632	3E-8		0.12152467	[0.078-0.165] unit decrease	Affymetrix [7288503] (imputed)	N
618	chr12	4384695	4384696	rs3217792	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs3217792-C	0.9131	3E-21		1.12	[1.10-1.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979439	4E-10		0.0940833	[0.065-0.124] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-8		0.0894814	[0.059-0.12] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-8		0.0873669	[0.057-0.117] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-9		0.0946563	[0.064-0.125] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	3E-9		0.0922071	[0.062-0.123] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-11		0.104642	[0.074-0.135] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	6E-9		0.0907314	[0.06-0.121] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	9E-11		0.101716	[0.071-0.132] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-9		0.094872	[0.064-0.126] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	3E-8		0.0859707	[0.056-0.116] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-9		0.0961615	[0.065-0.127] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-8		0.0880049	[0.058-0.118] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	4E-10		0.0983415	[0.068-0.129] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	4E-8		0.0859986	[0.055-0.117] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-9		0.0945453	[0.064-0.125] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-9		0.0926867	[0.062-0.123] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	4E-8		0.0845171	[0.054-0.115] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-10		0.102109	[0.071-0.133] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	5E-8		0.0846566	[0.054-0.115] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979441	2E-8		0.0897887	[0.059-0.121] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979441	2E-8		0.0896654	[0.059-0.121] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-9		0.0972165	[0.066-0.128] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	3E-8		0.0855632	[0.055-0.116] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979441	1E-8		0.0905878	[0.06-0.122] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979445	9E-9		0.0916521	[0.06-0.123] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979449	1E-8		0.0886878	[0.058-0.119] unit decrease	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	1E-9		0.0958104	[0.065-0.127] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	5E-8		0.0846451	[0.054-0.115] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	2E-8		0.086607	[0.056-0.117] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	5E-9		0.0938135	[0.062-0.125] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979444	3E-8		0.0861671	[0.056-0.117] unit increase	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12p13.32		rs76895963-T	0.979449	3E-8		0.0851312	[0.055-0.115] unit decrease	NR [11722792] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	4E-44		0.1105	[0.095-0.126] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p13.32		rs76895963-G	NR	8E-52		0.4582	[0.4-0.52] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	2E-24		0.0907	[0.073-0.108] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	1E-9		0.0535	[0.036-0.071] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	1E-12		0.0557	[0.04-0.071] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	1E-15		0.0774	[0.059-0.096] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	5E-14		0.0712	[0.053-0.09] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	1E-11		0.0555	[0.039-0.072] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12p13.32		rs76895963-G	NR	8E-19		0.4423	[0.34-0.54] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12p13.32		rs76895963-G	NR	3E-17		0.2027	[0.16-0.25] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	2E-101		0.1889	[0.17-0.21] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	2E-101		0.1355	[0.12-0.15] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	3E-28		0.1053	[0.087-0.124] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
618	chr12	4384843	4384844	rs76895963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12p13.32		rs76895963-G	NR	4E-10		0.0538	[0.037-0.071] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	2E-12		0.0655	[0.047-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	1E-23		0.0929	[0.075-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	3E-18		0.0808	[0.063-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	2E-9		0.0555	[0.037-0.074] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	6E-44		0.1356	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	9E-15		0.0753	[0.056-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	1E-14		0.0749	[0.056-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	1E-14		0.0715	[0.053-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	2E-29		0.1093	[0.09-0.128] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12p13.32	NR	rs76895963-G	NR	2E-18		0.0813	[0.063-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	12p13.32	NR	rs76895963-T	NR	4E-9		1.39	NR	NR [8016731] (imputed)	N
618	chr12	4384843	4384844	rs76895963	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.32	CCND2	rs76895963-T	0.9793	8E-112		0.1639	[0.15-0.18] unit decrease	Affymetrix [18391927] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p13.32	NR	rs76895963-G	0.019	1E-96		0.4223	[0.38-0.46] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p13.32	NR	rs76895963-T	0.979288	1E-21		0.0709513	[0.056-0.085] unit increase	Affymetrix [15000001]	N
618	chr12	4384843	4384844	rs76895963	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p13.32	CCND2	rs76895963-T	0.9793	8E-30		0.0874367	[0.072-0.103] unit increase	Affymetrix [NR] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12p13.32	CCND2, CCND2-AS1	rs76895963-?	NR	2E-16		0.0835	[0.066-0.101] unit decrease	Affymetrix [5701386] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12p13.32	CCND2, CCND2-AS1	rs76895963-?	NR	9E-11		0.0642	[0.047-0.082] unit decrease	Affymetrix [5701386] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.32	NR	rs76895963-G	0.020916000000000046	1E-120		0.0729231	[0.067-0.079] unit increase	Affymetrix [16582909] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.32	NR	rs76895963-G	0.020963999999999983	1E-64		0.075445	[0.066-0.085] unit increase	Affymetrix [16585854] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p13.32	NR	rs76895963-G	0.020872	2E-55		0.0662234	[0.058-0.075] unit increase	Affymetrix [16582621] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.32	NR	rs76895963-G	0.020916000000000046	4E-79		0.0651111	[0.058-0.072] unit increase	Affymetrix [16582965] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p13.32	NR	rs76895963-G	0.020963999999999983	1E-44		0.0729621	[0.062-0.084] unit increase	Affymetrix [16585866] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p13.32	NR	rs76895963-G	0.020872	2E-33		0.0554107	[0.046-0.065] unit increase	Affymetrix [16582614] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12p13.32	NR	rs76895963-T	0.979125	4E-18		0.065956	[0.051-0.081] unit increase	Affymetrix [16583148] (imputed)	N
618	chr12	4384843	4384844	rs76895963	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12p13.32	NR	rs76895963-T	0.979035	6E-21		0.0875478	[0.068-0.107] unit increase	Affymetrix [16585745] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	12p13.32	CCND2	rs76895963-G	0.0206487	1E-10		0.775081	[0.54-1.01] unit increase	Affymetrix [9463307] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	12p13.32	CCND2	rs76895963-G	0.0206487	4E-13		0.0591441	[0.043-0.075] unit decrease	Affymetrix [9463307] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	12p13.32	CCND2	rs76895963-G	0.0206487	1E-16		0.0238714	[0.018-0.03] unit decrease	Affymetrix [9463307] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12p13.32	NR	rs76895963-G	0.0206789	3E-10		0.235915	[0.16-0.31] unit increase	Affymetrix [21375087] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12p13.32	NR	rs76895963-G	0.0204933	3E-10		0.168586	[0.12-0.22] unit increase	Affymetrix [17914406] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p13.32	NR	rs76895963-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	12p13.32	CCND2	rs76895963-T	0.023	1E-7		2.84	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12p13.32	CCND2	rs76895963-G	0.02085400000000004	5E-9		0.070688	[0.047-0.094] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12p13.32	CCND2	rs76895963-G	0.021176	2E-13		0.076305	[0.056-0.097] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	12p13.32	RP11-264F23.3	rs76895963-G	0.0141213	8E-19		0.44233495	[0.34-0.54] unit decrease	Affymetrix [7288503] (imputed)	N
618	chr12	4384843	4384844	rs76895963	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	12p13.32	RP11-264F23.3	rs76895963-G	0.0141825	3E-17		0.20272695	[0.16-0.25] unit decrease	Affymetrix [7288503] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.32	CCND2-AS1	rs76895963-T	0.985443	5E-26		0.0751629	[0.061-0.089] unit increase	NR [13737936] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	2E-31				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	5E-11				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	4E-166				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	4E-29				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	3E-9				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	8E-9				NR [~ 8900000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p13.32	CCND2	rs76895963-G	0.9808	1E-12		0.8634	[0.63-1.1] mmHg increase	Affymetrix [NR] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs76895963-T	0.9802	1E-69		1.62	[1.54-1.71]	Affymetrix, Illumina [~ 27000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12p13.32	NA	rs76895963-T	0.9798	8E-8		0.0403	[0.026-0.055] unit decrease	NR [~ 27400000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.32		rs76895963-?	NR	4E-23		0.0762272	[0.06-0.092] unit increase	Affymetrix [20259828] (imputed)	N
618	chr12	4384843	4384844	rs76895963	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	12p13.32	CCND2	rs76895963-T	NR	2E-10		1.72		Affymetrix, Illumina [~ 13000000] (imputed)	N
618	chr12	4384843	4384844	rs76895963	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p13.32	CCND2-AS1, CCND2	rs76895963-T	0.9787	1E-7		0.1485	[0.094-0.203] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
618	chr12	4384843	4384844	rs76895963	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	12p13.32	CCND2	rs76895963-G	0.0285	3E-8		0.012426866	[0.008-0.0168] m increase	Illumina [24111857] (imputed)	N
618	chr12	4384843	4384844	rs76895963	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p13.32	chr12mb4	rs76895963-G	0.021275654	2E-7		0.725	[0.45-1] unit decrease	Affymetrix [~ 9800000] (imputed)	N
618	chr12	4386063	4386064	rs3217795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12p13.32	NR	rs3217795-G	NR	1E-15		0.0345	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4386063	4386064	rs3217795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12p13.32	NR	rs3217795-G	NR	5E-9		0.0258	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr12	4388270	4388271	rs3217810	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12p13.32	NR	rs3217810-T	NR	1E-6		1.11	[1.06-1.15]	Affymetrix, Illumina [> 10000000] (imputed)	N
618	chr12	4388270	4388271	rs3217810	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12p13.32	CCND2	rs3217810-T	0.1253	4E-19		1.13	[1.10-1.17]	Affymetrix, Illumina [16900397] (imputed)	N
618	chr12	4388270	4388271	rs3217810	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	12p13.32	NR	rs3217810-T	0.121	2E-11	(EA)	1.15	[1.11-1.20]	Affymetrix, Illumina [12931465] (imputed)	N
618	chr12	4388270	4388271	rs3217810	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	12p13.32	CCND2	rs3217810-T	0.16	6E-8		1.2	[1.12-1.28]	Affymetrix, Illumina [2708280] (imputed)	N
618	chr12	4393473	4393474	rs3217833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12p13.32	NR	rs3217833-G	NR	1E-10		0.0217	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4395864	4395865	rs3217843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12p13.32	NR	rs3217843-T	NR	7E-10		0.0216	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4399049	4399050	rs3217860	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.32	CCND2	rs3217860-G	0.258	4E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
618	chr12	4399495	4399496	rs3217863	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12p13.32	NR	rs3217863-T	NR	7E-10		0.0287	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4399969	4399970	rs3217869	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	12p13.32	CCND2	rs3217869-A	0.41	4E-6	(Tri-Tetra/cyclic antidepressants)			Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr12	4400807	4400808	rs3217874	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12p13.32	CCND2	rs3217874-T	NR	3E-6	(East Asian)	1.06	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
618	chr12	4400807	4400808	rs3217874	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12p13.32	CCND2	rs3217874-T	0.4282	1E-17		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
618	chr12	4405388	4405389	rs3217901	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	12p13.32	CCND2	rs3217901-G	0.41	2E-6		1.0869565	[1.05-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
618	chr12	4405388	4405389	rs3217901	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	12p13.32	CCND2	rs3217901-G	0.41	3E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [2708280] (imputed)	N
618	chr12	4406280	4406281	rs12299509	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12p13.32	CCND2	rs12299509-G	0.478621745294057	2E-10		0.0467	[0.032-0.061] unit increase	NR [5035015] (imputed)	N
618	chr12	4416303	4416304	rs4625554	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	12p13.32	C12orf5, CCND2	rs4625554-G	0.2996789	9E-6	(% improvement - SSRI treated - 12 weeks)	0.1927	[0.11-0.28] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
618	chr12	4420702	4420703	rs117952552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs117952552-T	NR	2E-16		0.0673	[0.051-0.083] unit increase	Affymetrix [9000000] (imputed)	N
618	chr12	4425121	4425122	rs10849033	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	12p13.32	C12orf5	rs10849033-G	0.02	9E-6		2.55	[1.60-3.80]	Affymetrix [307944]	N
618	chr12	4429543	4429544	rs1340348525	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	12p13.32		rs1340348525-C	NR	5E-6		4.62927		Affymetrix, Illumina [62056310] (imputed)	N
619	chr12	4479548	4479549	rs7955866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs7955866-A	NR	2E-68		0.0673	[0.06-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
619	chr12	4491908	4491909	rs6489536	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	12p13.32		rs6489536-C	0.33	3E-15		0.0757	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
619	chr12	4497671	4497672	rs7308018	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	12p13.32		rs7308018-A	0.4499	3E-9	(allelic)	1.22	[1.142-1.303]	Affymetrix [7842171] (imputed)	N
619	chr12	4500694	4500695	rs12814390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs12814390-T	NR	8E-29		0.0331	[0.027-0.039] unit increase	Affymetrix [9000000] (imputed)	N
619	chr12	4504509	4504510	rs10849052	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.32	NR	rs10849052-?	NR	9E-10				Affymetrix [NR]	N
619	chr12	4515373	4515374	rs10774231	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	12p13.32	Intergenic	rs10774231-C	NR	5E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix [9304965] (imputed)	N
619	chr12	4518139	4518140	rs1024905	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	12p13.32	FGF6	rs1024905-G	0.48	3E-9		1.12	[1.08-1.16]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
619	chr12	4518139	4518140	rs1024905	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	12p13.32	FGF6	rs1024905-G	0.47	2E-17		1.06	[1.04-1.08]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
619	chr12	4518168	4518169	rs10774232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs10774232-G	NR	1E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
619	chr12	4521510	4521511	rs78470967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.32		rs78470967-?	NR	2E-14				NR [~ 8900000] (imputed)	N
619	chr12	4523455	4523456	rs10849061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	12p13.32		rs10849061-T	NR	4E-9		0.1109	[0.074-0.148] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
619	chr12	4523455	4523456	rs10849061	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	12p13.32	FGF6	rs10849061-C	0.486742	8E-10		0.1192272	[0.081-0.157] unit increase	Affymetrix [7288503] (imputed)	N
619	chr12	4523455	4523456	rs10849061	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	12p13.32	intergenic	rs10849061-?	0.5	2E-6		1.1	[1.06-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
619	chr12	4523455	4523456	rs10849061	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	12p13.32	intergenic	rs10849061-?	0.5	1E-6		1.14	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
619	chr12	4523455	4523456	rs10849061	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	12p13.32	intergenic	rs10849061-?	0.5	2E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
619	chr12	4527321	4527322	rs2160875	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	12p13.32		rs2160875-?	NR	1E-8				NR [9705931] (imputed)	N
619	chr12	4528671	4528672	rs140668749	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	12p13.32	FGF23, FGF6	rs140668749-?	NR	1E-18		1.07	[1.054-1.086]	Illumina [13763073] (imputed)	N
619	chr12	4533378	4533379	rs888468	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	12p13.32	FGF6	rs888468-?		5E-6				Affymetrix, Illumina [1348798]	N
619	chr12	4535780	4535781	rs12368351	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	12p13.32	FGF23, FGF6	rs12368351-?	NR	3E-18		0.07202	[0.056-0.088] unit decrease novel	Illumina [6108953] (imputed)	N
619	chr12	4546564	4546565	rs17177326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p13.32		rs17177326-A	NR	7E-9		0.0319	[0.021-0.043] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
619	chr12	4554412	4554413	rs11611403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs11611403-T	NR	9E-76		0.0623	[0.056-0.069] unit increase	Affymetrix [9000000] (imputed)	N
619	chr12	4554412	4554413	rs11611403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12p13.32	NR	rs11611403-T	NR	5E-14		0.0243	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
620	chr12	4591099	4591100	rs11063193	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12p13.32	C12orf4	rs11063193-T	0.8777	5E-10		0.0029	[0.0019-0.0039] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
620	chr12	4601881	4601882	rs78869064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs78869064-C	NR	9E-27		0.0864	[0.071-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
620	chr12	4606167	4606168	rs2970818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p13.32		rs2970818-A	NR	4E-26		0.0402	[0.033-0.048] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
620	chr12	4606167	4606168	rs2970818	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12p13.32	C12orf4	rs2970818-T	0.89705	4E-36		0.0047468	[0.004-0.0055] unit increase	Affymetrix [13995440] (imputed)	N
620	chr12	4606167	4606168	rs2970818	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12p13.32	C12orf4	rs2970818-T	0.9	5E-14		7.52	z-score increase	Affymetrix [4311822] (imputed)	N
620	chr12	4606167	4606168	rs2970818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs2970818-A	NR	2E-254		0.1396	[0.13-0.15] unit increase	Affymetrix [9000000] (imputed)	N
620	chr12	4606167	4606168	rs2970818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12p13.32	NR	rs2970818-A	NR	5E-26		0.0414	[0.034-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
620	chr12	4606167	4606168	rs2970818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12p13.32	NR	rs2970818-A	NR	1E-9		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
620	chr12	4606167	4606168	rs2970818	20558539	Kestenbaum B	2010-06-17	J Am Soc Nephrol	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	12p13.32	FGF6, RAD51AP1, FGF23	rs2970818-A	0.09	4E-9		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
620	chr12	4616641	4616642	rs4238020	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12p13.32	C12orf4	rs4238020-T	0.8703	6E-10		0.0029	[0.0019-0.0039] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
620	chr12	4650064	4650065	rs10849087	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	12p13.32	C12orf4	rs10849087-T	0.271	1E-9		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
620	chr12	4657881	4657882	rs114193736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs114193736-A	NR	1E-30		0.1709	[0.14-0.2] unit increase	Affymetrix [9000000] (imputed)	N
620	chr12	4675217	4675218	rs2884670	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	12p13.32	DYRK4	rs2884670-?	NR	2E-7		1.28	[1.19-1.37]	Affymetrix, Illumina [NR] (imputed)	N
620	chr12	4676898	4676899	rs10849094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs10849094-G	NR	2E-28		0.0561	[0.046-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
620	chr12	4714815	4714816	rs73039868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.32	NR	rs73039868-A	NR	2E-14		0.053	[0.039-0.067] unit increase	Affymetrix [9000000] (imputed)	N
621	chr12	4779312	4779313	rs1009634	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	12p13.32	AKAP3, NDUFA9, GALNT8, RP11-234B24.2	rs1009634-G	NR	7E-9	(OTU10032 unclassified Enterobacteriaceae Species-level OTU)	1.31	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
621	chr12	4808250	4808251	rs116938548	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12p13.32	Intergenic	rs116938548-T	NR	2E-7	(between families)	5.24	unit increase	Affymetrix [up to 15107142] (imputed)	N
621	chr12	4812960	4812961	rs79862164	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.32		rs79862164-C	0.0110047	1E-8		0.0596934	[0.039-0.08] unit increase	Illumina [7980478] (imputed)	N
622	chr12	4867958	4867959	rs77987208	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12p13.32	NR	rs77987208-C	0.141	6E-7	(Males)	0.342041	[0.2-0.49] unit increase	Illumina [~ 6600000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	7E-10	(130 ms)	0.0341784	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	6E-12	(54 ms)	0.0389098	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	6E-11	(106 ms)	0.0369468	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	6E-10	(108 ms)	0.0350686	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	4E-9	(110 ms)	0.032921	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-9	(88 ms)	0.0336448	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-9	(74 ms)	0.0338421	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-8	(76 ms)	0.0318879	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-12	(56 ms)	0.0397013	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-12	(50 ms)	0.0397118	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-12	(48 ms)	0.0399718	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-11	(52 ms)	0.0378542	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-10	(70 ms)	0.0358583	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	2E-10	(104 ms)	0.0354537	[0.025-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-9	(80 ms)	0.0337054	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-9	(128 ms)	0.0336928	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-8	(78 ms)	0.0328526	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-12	(64 ms)	0.0400121	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-10	(72 ms)	0.0357421	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4899031	4899032	rs10849144	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p13.32	GALNT8	rs10849144-T	0.484417	1E-10	(62 ms)	0.0357848	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
622	chr12	4917167	4917168	rs10849145	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (moderate intensity activity duration)	91,105 European ancestry individuals	NA	12p13.32	KCNA6	rs10849145-T	0.825	2E-8		0.035	[0.023-0.047] SD units increase	NR [9926106] (imputed)	N
622	chr12	4923696	4923697	rs2058205	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12p13.32	KCNA6	rs2058205-T	0.3072	7E-6	(EA)			Illumina [4404269] (imputed)	N
622	chr12	4930099	4930100	rs6489568	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.32	KCNA6	rs6489568-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
623	chr12	5045047	5045048	rs554663181	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		12p13.32	intergenic	rs554663181-C	0.0127404	5E-6		2.22205	[1.29-3.16] unit decrease	Illumina [640625] (imputed)	N
623	chr12	5058392	5058393	rs11063421	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p13.32	NR	rs11063421-T	NR	5E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
623	chr12	5096840	5096841	rs1157755	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	12p13.32	KCNA5	rs1157755-?	0.08	2E-6	(male)	2.468	[1.70-3.58]	Illumina [5595657] (imputed)	N
623	chr12	5097477	5097478	rs116568708	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	12p13.32	Intergenic	rs116568708-?		4E-7		2.6169	[NR] unit decrease	Affymetrix [NR] (imputed)	N
623	chr12	5109094	5109095	rs116367042	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	12p13.32		rs116367042-?	NR	6E-9				Affymetrix [11524071] (imputed)	N
624	chr12	5131552	5131553	rs16932667	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	12p13.32	NR	rs16932667-T	0.66	8E-6		0.052	[0.028-0.076] unit increase	Affymetrix, Illumina [138093] (imputed)	N
624	chr12	5139268	5139269	rs10849195	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.32	NR	rs10849195-?	NR	1E-6				Affymetrix [NR]	N
624	chr12	5140483	5140484	rs12302829	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	12p13.32	intergenic	rs12302829-G	0.008	8E-6		0.35	[NR] unit decrease	Illumina [948658]	N
624	chr12	5143596	5143597	rs150996375	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	12p13.32	Intergenic	rs150996375-?	NR	3E-6		3.51	[2.07-5.96]	Illumina [8600000] (imputed)	N
624	chr12	5153693	5153694	rs45504599	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KCNA5	rs45504599-?	NR	2E-13	(male)	2.691	[NR] unit decrease	Affymetrix [NR] (imputed)	N
624	chr12	5199472	5199473	rs592149	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	12p13.32	NR	rs592149-?		2E-6		2.29	[1.63-3.22]	Illumina [539473] (imputed)	N
625	chr12	5298323	5298324	rs4765807	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p13.32		rs4765807-A	0.22	4E-60		16.36	z score increase	Affymetrix [9061022] (imputed)	N
625	chr12	5298323	5298324	rs4765807	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p13.32		rs4765807-A	0.22	4E-21		9.42	z score increase	Affymetrix [9061022] (imputed)	N
625	chr12	5314507	5314508	rs17179798	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p13.32		rs17179798-A	0.22	8E-39		13.04	z score increase	Affymetrix [9061022] (imputed)	N
625	chr12	5314507	5314508	rs17179798	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p13.32	NR	rs17179798-A	0.2174	1E-17				NR [9056863] (imputed)	N
625	chr12	5314507	5314508	rs17179798	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p13.32	NR	rs17179798-A	0.2174	1E-17				NR [9056863] (imputed)	N
625	chr12	5314507	5314508	rs17179798	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12p13.32	NR	rs17179798-A	0.2098	5E-10	(Pericalcarine)	7.866617	[5.39-10.34] unit increase	Affymetrix, Illumina [NR]	N
625	chr12	5317839	5317840	rs11063563	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12p13.32	NR	rs11063563-G	0.169	5E-6	(Females)	0.323007	[0.19-0.46] unit decrease	Illumina [~ 6600000] (imputed)	N
625	chr12	5317839	5317840	rs11063563	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12p13.32	NR	rs11063563-G	0.169	3E-7	(Females)	0.315982	[0.2-0.43] unit decrease	Illumina [~ 6600000] (imputed)	N
625	chr12	5317849	5317850	rs181288	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 120)	19,670 European ancestry individuals	NA	12p13.32		rs181288-?	NR	4E-72				NR [9705931] (imputed)	N
625	chr12	5317849	5317850	rs181288	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	12p13.32	NR	rs181288-?		3E-8				NR [7428630] (imputed)	N
625	chr12	5318225	5318226	rs240817	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p13.32	NR	rs240817-?		4E-8				NR [7428630] (imputed)	N
625	chr12	5320479	5320480	rs17786035	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12p13.32	NR	rs17786035-G	0.172	7E-7	(Females)	0.351513	[0.21-0.49] unit decrease	Illumina [~ 6600000] (imputed)	N
625	chr12	5337674	5337675	rs75521172	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 281)	19,670 European ancestry individuals	NA	12p13.32		rs75521172-?	NR	1E-12				NR [9705931] (imputed)	N
626	chr12	5374516	5374517	rs7308861	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12p13.32		rs7308861-C	NR	3E-7		0.4425	unit increase	Illumina [NR] (imputed)	N
626	chr12	5393328	5393329	rs11615866	24974787	Meng W	2014-06-26	Eur J Pain	A genome-wide association study suggests an association of Chr8p21.3 (GFRA2) with diabetic neuropathic pain.	Neuropathic pain in type 2 diabetes	572 European ancestry cases, 2,491 European ancestry controls	NA	12p13.32	RP11-1038A11.3	rs11615866-T	0.12	1E-6		2.26	[NR]	Affymetrix, Illumina [6494962] (imputed)	N
626	chr12	5417855	5417856	rs75507123	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p13.31	RP11-1038A11.3	rs75507123-T	0.1281	8E-10		0.1396	[0.095-0.184] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
626	chr12	5435024	5435025	rs76053496	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 150)	19,670 European ancestry individuals	NA	12p13.31		rs76053496-?	NR	7E-9				NR [9705931] (imputed)	N
627	chr12	5505838	5505839	rs12368919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p13.31	NR	rs12368919-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
627	chr12	5536358	5536359	rs73039946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.31		rs73039946-?	NR	2E-10				NR [~ 8900000] (imputed)	N
627	chr12	5538111	5538112	rs1861835	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 120)	19,670 European ancestry individuals	NA	12p13.31		rs1861835-?	NR	3E-40				NR [9705931] (imputed)	N
627	chr12	5550737	5550738	rs17784533	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NTF3	rs17784533-G	0.904375	9E-6	(NTF3, 4145_58_2)	0.18911177	[0.11-0.27] unit increase	Illumina [> 1000000] (imputed)	N
627	chr12	5553060	5553061	rs918177	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12p13.31	NR	rs918177-A	0.411	3E-6	(IFNalpha_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
627	chr12	5600324	5600325	rs118020824	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-145 sp000435615 abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.31		rs118020824-T	0.0240741	1E-8		0.261744	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
627	chr12	5618947	5618948	rs7138947	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	12p13.31	NTF3	rs7138947-A	NR	2E-8	(AA)	3.15		Illumina [at least 360704] (imputed)	N
627	chr12	5622663	5622664	rs10774335	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.31	TMEM16B	rs10774335-?	NR	5E-6	(3-phosphoglyceric acid)	0.54138786	[0.31-0.77] unit decrease	Affymetrix [at least 2500000] (imputed)	N
628	chr12	5696000	5696001	rs7964474	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional alcohol use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	12p13.31	ANO2	rs7964474-?	NR	7E-6		0.34	[0.22-0.55]	NR [341191]	N
628	chr12	5751341	5751342	rs2110166	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.31	NR	rs2110166-C	0.983043627256318	6E-6	(IGP73)	0.562	[0.32-0.81] unit decrease	Illumina [~ 2500000] (imputed)	N
628	chr12	5751341	5751342	rs2110166	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.31	NR	rs2110166-C	0.983043522563177	5E-6	(IGP52)	0.5673	[0.32-0.81] unit decrease	Illumina [~ 2500000] (imputed)	N
629	chr12	5767384	5767385	rs4930776	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	12p13.31	ANO2	rs4930776-?		3E-6				Illumina [5970354] (imputed)	N
629	chr12	5797100	5797101	rs12579350	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	12p13.31		rs12579350-G	0.761	4E-6		0.07	[0.02-0.27]	Illumina [243345]	N
629	chr12	5797100	5797101	rs12579350	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs12579350-?	NR	1E-10				Affymetrix [NR]	N
629	chr12	5797100	5797101	rs12579350	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12p13.31	TMEM16B	rs12579350-?	0.01	4E-9				Affymetrix [253903]	N
629	chr12	5879408	5879409	rs34720592	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	12p13.31	ANO2	rs34720592-?		7E-6	(EA)	0.5237	[0.3-0.75] unit decrease	Affymetrix [NR] (imputed)	N
630	chr12	5906138	5906139	rs3782652	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p13.31	ANO2	rs3782652-?		3E-8				NR [7428630] (imputed)	N
630	chr12	5906138	5906139	rs3782652	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.31	NR	rs3782652-?	NR	1E-8	(left postcentral)			NR [9227495] (imputed)	N
630	chr12	5911213	5911214	rs3782655	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p13.31		rs3782655-T	0.47	4E-43		13.78	z score increase	Affymetrix [9061022] (imputed)	N
630	chr12	5913166	5913167	rs3782656	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p13.31		rs3782656-C	0.48	9E-91		20.21	z score increase	Affymetrix [9061022] (imputed)	N
630	chr12	5913166	5913167	rs3782656	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p13.31	NR	rs3782656-C	0.4877	1E-17				NR [9056863] (imputed)	N
630	chr12	5916349	5916350	rs2277403	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12p13.31		rs2277403-?	NR	4E-49				NR [9705931] (imputed)	N
630	chr12	5917192	5917193	rs7311862	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	12p13.31		rs7311862-C	0.48	9E-7				Affymetrix [9061022] (imputed)	N
630	chr12	5917192	5917193	rs7311862	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p13.31		rs7311862-C	0.48	1E-103		21.62	z score increase	Affymetrix [9061022] (imputed)	N
630	chr12	5917192	5917193	rs7311862	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p13.31	NR	rs7311862-C	0.4875	1E-17				NR [9056863] (imputed)	N
630	chr12	5922634	5922635	rs536991317	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12p13.31	NR	rs536991317-A	0.9866	8E-7		5.6126	[3.38-7.85] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
630	chr12	5922634	5922635	rs536991317	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	12p13.31	NR	rs536991317-A	0.9866	8E-7		5.6126	[3.38-7.85] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
630	chr12	5938575	5938576	rs74709761	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	12p13.31	ANO2	rs74709761-C	NR	6E-6		0.41	[0.23-0.59] unit decrease	Illumina [5918868] (imputed)	N
630	chr12	5956868	5956869	rs10466912	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs10466912-T	0.01045	1E-8	(NIPSNAP1)	0.3944	NR unit increase	Illumina [1671387] (imputed)	N
630	chr12	5981352	5981353	rs7307889	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	ANO2	rs7307889-A	0.026	3E-6	(Calorimeter activity )	0.04	[NR] counts/d increase	Illumina [899892]	N
630	chr12	6011489	6011490	rs117585797	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	12p13.31	ANO2	rs117585797-A	0.013	2E-8	(Oestradiol)	0.624	[NR] unit increase	Illumina [7879351] (imputed)	N
630	chr12	6023715	6023716	rs117060086	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs117060086-T	0.03136	2E-8	(RAB7A)	0.0375	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6042509	6042510	rs76855280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs76855280-G	0.05052	2E-9	(GCN1)	0.01968	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6042509	6042510	rs76855280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs76855280-G	0.05052	2E-8	(DLST)	0.09907	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6042509	6042510	rs76855280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs76855280-G	0.05052	2E-8	(ACO2)	0.2761	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6042509	6042510	rs76855280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs76855280-G	0.05052	1E-8	(HSPD1)	1.85	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6042509	6042510	rs76855280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs76855280-G	0.05052	1E-8	(CS)	0.07959	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6059564	6059565	rs7953373	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs7953373-A	0.04704	3E-8	(DLST)	0.1003	NR unit increase	Illumina [1671387] (imputed)	N
631	chr12	6062893	6062894	rs57040304	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs57040304-?	NR	8E-12				Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6062893	6062894	rs57040304	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs57040304-?	NR	2E-15	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6070844	6070845	rs12423482	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs12423482-?	NR	3E-18				Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6070844	6070845	rs12423482	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs12423482-?	NR	2E-15	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6102826	6102826	rs200638456	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)(time to event)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	12p13.31	VWF	rs200638456-?		3E-8	(EA)	3.5	[2.25-5.46]	Illumina [up to 8000000] (imputed)	N
631	chr12	6102826	6102826	rs200638456	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in psoriasis (herpes zoster)	56 European ancestry cases, 1,543 European ancestry controls, 10 East Asian ancestry cases, 80 East Asian ancestry controls, 4 Hispanic cases, 245 Hispanic controls	NA	12p13.31	VWF	rs200638456-?		1E-6	(EA)	4.04	[2.42-6.75]	Illumina [up to 8000000] (imputed)	N
631	chr12	6115723	6115724	rs2532859	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12p13.31	NR	rs2532859-?	NR	2E-6	(EA)	0.2726	[0.16-0.38] unit decrease	Illumina [up to 11892802] (imputed)	N
631	chr12	6128205	6128206	rs61750088	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	12p13.31		rs61750088-?	NR	1E-16		0.555747	[0.41-0.7] unit increase	NR [9800000] (imputed)	N
631	chr12	6128442	6128443	rs216311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DHFR	5,353 Icelandic ancestry individuals	NA	12p13.31		rs216311-T	0.4169	3E-82		0.342383	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
631	chr12	6128442	6128443	rs216311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31	VWF	rs216311-C	0.61032	2E-20		0.021549366	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
631	chr12	6128442	6128443	rs216311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31	VWF	rs216311-C	0.610313	4E-38		0.029613439	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr12	6128442	6128443	rs216311	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	VWF	rs216311-C	0.612	3E-148	(Dihydrofolate reductase, DHFR.9823.2.3)	0.62	[0.58-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
631	chr12	6128442	6128443	rs216311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p13.31	VWF	rs216311-C	0.6124	7E-15		0.0294079	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
631	chr12	6128983	6128984	rs216312	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	12p13.31	VWF	rs216312-?		5E-6	(endpoint 5, dominant)	1.5151515	[NR]	Illumina [> 750000]	N
631	chr12	6152726	6152727	rs7308002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWF	5,356 Icelandic ancestry individuals	NA	12p13.31		rs7308002-A	0.4143	9E-21		0.173851	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
631	chr12	6152726	6152727	rs7308002	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs7308002-G	0.5875	4E-13	(VWF, 3050_7_2)	0.18120727	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
631	chr12	6152726	6152727	rs7308002	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs7308002-G	0.5875	2E-11	(DHFR, 9823_2_3)	0.16750471	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
631	chr12	6153513	6153514	rs1063857	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	vWF levels	17,596 European ancestry individuals	Up to 7,604 European ancestry individuals		VWF	rs1063857-?	NR	2E-32		6.0	[3.2-8.8] unit increase	Affymetrix, Illumina [2742821] (imputed)	N
631	chr12	6153533	6153534	rs1063856	28495826	Williams SR	2017-06-01	Stroke	Genetic Drivers of von Willebrand Factor Levels in an Ischemic Stroke Population and Association With Risk for Recurrent Stroke.	vWF levels in ischaemic stroke and hyperhomocysteinaemia	1,931 European and unknown ancestry individuals	NA	12p13.31	VWF	rs1063856-?	NR	5E-6				NR [NR] (imputed)	N
631	chr12	6153533	6153534	rs1063856	23267103	Desch KC	2012-12-24	Proc Natl Acad Sci U S A	Linkage analysis identifies a locus for plasma von Willebrand factor undetected by genome-wide association.	Coagulation factor levels	3,250 European ancestry individuals, up to 212 individuals	NA	12p13.31	VWF	rs1063856-A	0.395	5E-16		0.12	[0.091-0.149] lU/dL decrease	Illumina [723716]	N
631	chr12	6153533	6153534	rs1063856	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Factor VIII levels	15,279 European ancestry individuals	up to 7,604 European ancestry individuals	12p13.31	VWF	rs1063856-?	NR	4E-9		2.6	[0.2-5.0] unit increase	Affymetrix, Illumina [2729294] (imputed)	N
631	chr12	6153737	6153738	rs1558519	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	12p13.31	VWF	rs1558519-G	NR	4E-13		1.08	[1.06-1.10]	Affymetrix, Illumina [12923718] (imputed)	N
631	chr12	6153737	6153738	rs1558519	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12p13.31	NR	rs1558519-?	NR	2E-13		0.0761	[0.056-0.096] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
631	chr12	6153966	6153967	rs2238109	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs2238109-A	0.38	2E-89		0.05	[0.045-0.055] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6153966	6153967	rs2238109	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs2238109-A	0.37	1E-82	(EA)	0.0497	[0.045-0.055] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6153966	6153967	rs2238109	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs2238109-A	0.39	4E-24		0.026	NR unit increase	Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6157393	6157394	rs2283335	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs2283335-?	NR	6E-83	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6157393	6157394	rs2283335	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs2283335-?	NR	2E-89				Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6159044	6159045	rs216303	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	12p13.31	VWF	rs216303-?	NR	5E-22		1.754386	[1.56-1.96]	Affymetrix, Illumina [~ 2600000] (imputed)	N
631	chr12	6160145	6160146	rs11064010	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs11064010-?	NR	8E-27				Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6160145	6160146	rs11064010	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs11064010-?	NR	2E-27	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
631	chr12	6160145	6160146	rs11064010	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs11064010-?	NR	8E-7	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
631	chr12	6160145	6160146	rs11064010	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs11064010-?	NR	2E-11				Affymetrix, Illumina [13887196] (imputed)	N
632	chr12	6160613	6160614	rs7135039	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs7135039-T	0.38	2E-24		0.0271	[0.022-0.032] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
632	chr12	6160613	6160614	rs7135039	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12p13.31	VWF	rs7135039-T	0.36	3E-19	(EA)	0.0256	[0.02-0.031] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
632	chr12	6164137	6164138	rs79879554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31	VWF	rs79879554-A	0.089869	4E-28		0.042759795	[0.035-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr12	6204199	6204200	rs12299946	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12p13.31		rs12299946-G	0.869	2E-10				Affymetrix [10369434] (imputed)	N
632	chr12	6225930	6225931	rs112814955	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs112814955-?	NR	9E-43				Affymetrix, Illumina [10537485] (imputed)	N
632	chr12	6225930	6225931	rs112814955	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12p13.31	VWF	rs112814955-?	NR	1E-42	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
632	chr12	6229570	6229571	rs113566801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWF	5,356 Icelandic ancestry individuals	NA	12p13.31		rs113566801-T	0.09459	4E-20		0.284452	[0.22-0.35] unit decrease	Illumina [7506463] (imputed)	N
632	chr12	6252960	6252961	rs61908718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31		rs61908718-T	0.645787	1E-38		0.0354708	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr12	6255424	6255425	rs6489695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.31		rs6489695-G	0.685807	4E-22		0.023816023	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr12	6271734	6271735	rs6489698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12p13.31	RP3-454B23.1	rs6489698-T	0.634474	8E-17		0.019545577	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
632	chr12	6271734	6271735	rs6489698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12p13.31	RP3-454B23.1	rs6489698-T	0.634495	4E-16		0.01908317	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
632	chr12	6275827	6275828	rs10849408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.31		rs10849408-G	0.6302	1E-25		0.02457265	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
632	chr12	6281038	6281039	rs11064074	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12p13.31	NR	rs11064074-T	0.334665	5E-20		0.0197	[0.016-0.024] unit increase	Affymetrix [23037915] (imputed)	N
632	chr12	6285390	6285391	rs10774405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.31	NR	rs10774405-A	0.42225	8E-132		0.04548	[0.042-0.049] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
632	chr12	6285845	6285846	rs10849412	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12p13.31		rs10849412-A	0.571	2E-83				Affymetrix [10369434] (imputed)	N
632	chr12	6285845	6285846	rs10849412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31		rs10849412-G	0.425925	3E-30		0.030247947	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
632	chr12	6285866	6285867	rs10849413	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p13.31		rs10849413-A	0.504	9E-45				Affymetrix [10369434] (imputed)	N
632	chr12	6285866	6285867	rs10849413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p13.31	NR	rs10849413-G	0.492998	9E-541		0.097577	[0.094-0.101] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
632	chr12	6286079	6286080	rs10774407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.31		rs10774407-C	NR	9E-111		0.0519	[0.047-0.056] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
632	chr12	6288833	6288834	rs1558328	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs1558328-T	0.488903	2E-136				Affymetrix, Illumina [24588908] (imputed)	N
632	chr12	6289066	6289067	rs1558327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31		rs1558327-G	0.430748	4E-12		0.029402189	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
632	chr12	6289218	6289219	rs1558324	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	12p13.31	CD9, VWF	rs1558324-A	NR	2E-21		0.01	[0.008-0.012] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
632	chr12	6289937	6289938	rs1076415	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	12p13.31		rs1076415-T	0.7279	2E-6		0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [NR] (imputed)	N
632	chr12	6290433	6290434	rs4991925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p13.31	intergenic	rs4991925-G	0.4836	3E-171		0.1011061	[0.094-0.108] unit increase	Affymetrix [~ 2500000] (imputed)	N
632	chr12	6290540	6290541	rs4290286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12p13.31	intergenic	rs4290286-G	0.484	2E-18		0.03163158	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
632	chr12	6290647	6290647	rs531702210	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	12p13.31		rs531702210-?	0.4249	4E-9		0.006601	unit increase	NR [6200000] (imputed)	N
632	chr12	6290647	6290647	rs531702210	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	12p13.31		rs531702210-?	0.4249	8E-6		0.006215	unit increase	NR [6200000] (imputed)	N
632	chr12	6291092	6291093	rs7342306	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	12p13.31	VWF, CD9	rs7342306-G	0.75	2E-7		4.81	[3.01-6.61] unit increase	Illumina [2232944] (imputed)	N
632	chr12	6291092	6291093	rs7342306	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	12p13.31	CD9, VWF	rs7342306-G	NR	4E-11		2.532	[1.78-3.28] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
633	chr12	6291891	6291892	rs998908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31		rs998908-G	0.489264	5E-70		0.07341821	[0.065-0.082] unit increase	Affymetrix [93095623] (imputed)	N
633	chr12	6293372	6293373	rs4608137	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	12p13.31		rs4608137-A	0.6718	2E-6		0.0901	[0.053-0.128] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
633	chr12	6294389	6294390	rs12815397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs12815397-A	0.518903	3E-578				Affymetrix, Illumina [17210439] (imputed)	N
633	chr12	6294734	6294735	rs34667100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12p13.31	intergenic	rs34667100-C	0.4883	2E-36		0.0459544	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
633	chr12	6297260	6297261	rs35997550	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	12p13.31	NR	rs35997550-T	0.0309	7E-6		1.6669444	[1.44-1.89]	Illumina [8567708] (imputed)	N
633	chr12	6308522	6308523	rs3181157	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		12p13.31	CD9	rs3181157-A	0.10	4E-6		3.22	[1.96-5.29]	Illumina [518577]	N
633	chr12	6332837	6332838	rs4764487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31	CD9	rs4764487-G	0.606534	1E-20		0.02152713	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
633	chr12	6332837	6332838	rs4764487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p13.31	CD9	rs4764487-G	0.6096	2E-25		0.03899139	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
633	chr12	6385726	6385727	rs10849432	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	12p13.31	NR	rs10849432-T	0.82	4E-10		1.14	[1.09-1.18]	Affymetrix, Illumina [~ 4000000] (imputed)	N
633	chr12	6385726	6385727	rs10849432	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	12p13.31	PLEKHG6, TNFRSF1A, CD9	rs10849432-T	0.82	6E-10	(East Asian)	1.14	[1.09-1.18]	Affymetrix, Illumina [2400000] (imputed)	N
633	chr12	6396669	6396669	rs71450133	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	12p13.31	PLEKHG6	rs71450133-D	0.18	9E-7		1.09	[1.05-1.13]	Illumina [484196]	N
633	chr12	6405577	6405578	rs6489709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12p13.31		rs6489709-C	NR	2E-10		0.0659	[0.046-0.086] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
633	chr12	6406903	6406904	rs10849433	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12p13.31	PLEKHG6, CD9	rs10849433-C	0.267	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
633	chr12	6412035	6412036	rs10849438	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12p13.31	NR	rs10849438-G	0.12	1E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [> 10000000] (imputed)	N
633	chr12	6421173	6421174	rs2250430	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12p13.31	CD9	rs2250430-T	0.7095	3E-10		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
634	chr12	6435570	6435571	rs10849441	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	PLEKHG6	rs10849441-G	0.352	9E-6	(Urinary free dopamine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
634	chr12	6440008	6440009	rs1800693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p13.31		rs1800693-C	NR	1E-17		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
634	chr12	6440008	6440009	rs1800693	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	12p13.31		rs1800693-C	NR	1E-16		0.179759	[0.14-0.22] unit increase	NR [5054572] (imputed)	N
634	chr12	6440008	6440009	rs1800693	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p13.31	NR	rs1800693-T	0.59831	5E-23		0.0198902	[0.016-0.024] unit increase	NR [NR]	N
634	chr12	6440008	6440009	rs1800693	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.31	TNFRSF1A	rs1800693-C	NR	2E-47		1.1494253	NR	Affymetrix, Illumina [8278136] (imputed)	N
634	chr12	6440008	6440009	rs1800693	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	12p13.31	NR	rs1800693-?	NR	1E-6		0.0436	[0.026-0.061] unit increase	Illumina [at least 560000] (imputed)	N
634	chr12	6440008	6440009	rs1800693	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	12p13.31	TNFRSF1A	rs1800693-C		3E-8		1.17	[1.11-1.23]	Illumina [at least 8143088] (imputed)	N
634	chr12	6440008	6440009	rs1800693	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	12p13.31	TNFRSF1A, PLEKHG6	rs1800693-C	0.51	2E-9		1.2195122	NR	Illumina [1143634] (imputed)	N
634	chr12	6440008	6440009	rs1800693	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	12p13.31	TNFRSF1A	rs1800693-G	0.41	7E-28		1.14		Illumina [161311]	N
634	chr12	6440008	6440009	rs1800693	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	12p13.31	TNFRSF1A, LTBR, SCNN1A	rs1800693-G	0.4	1E-14		1.27	[1.19-1.34]	Illumina [237619] (imputed)	N
634	chr12	6440008	6440009	rs1800693	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12p13.31	TNFRSF1A	rs1800693-G	NR	4E-14		1.12	[1.11-1.14]	Illumina [465434]	N
634	chr12	6440008	6440009	rs1800693	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	12p13.31	TNFRSF1A	rs1800693-C	0.40	2E-9		1.22	[1.14-1.30]	Illumina [507467]	N
634	chr12	6440008	6440009	rs1800693	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12p13.31	TNFRSF1A	rs1800693-C	0.45	2E-11		1.2	[1.10-1.31]	Affymetrix, Illumina [~ 2560000] (imputed)	N
634	chr12	6441621	6441622	rs12832171	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.31	TNFRSF1A	rs12832171-C	NR	4E-10		1.166	NR	Affymetrix, Illumina [8278136] (imputed)	N
634	chr12	6441622	6441623	rs11525582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs11525582-G	0.581063	7E-16		0.018407196	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6441622	6441623	rs11525582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs11525582-G	0.581052	3E-11		0.015175088	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6442000	6442001	rs4149639	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	12p13.31	TNFRSF1A	rs4149639-C	0.042	3E-7	(Allelic model)	4.443	[2.571-7.677]	Illumina [733202]	N
634	chr12	6442000	6442001	rs4149639	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	12p13.31	TNFRSF1A	rs4149639-C	0.047	7E-6	(Allelic model)	2.763	[1.781-4.287]	Illumina [733202]	N
634	chr12	6442345	6442346	rs1800692	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.31		rs1800692-A	0.414	1E-15				Affymetrix [10369434] (imputed)	N
634	chr12	6442345	6442346	rs1800692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs1800692-G	0.587119	1E-32		0.027395997	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6442345	6442346	rs1800692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs1800692-G	0.587102	2E-22		0.022424027	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6442345	6442346	rs1800692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs1800692-G	0.586787	5E-15		0.017709235	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6442345	6442346	rs1800692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs1800692-G	0.597027	7E-18				Affymetrix, Illumina [19872809] (imputed)	N
634	chr12	6442345	6442346	rs1800692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12p13.31	NR	rs1800692-G	0.58754	9E-19		0.018051	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
634	chr12	6442345	6442346	rs1800692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12p13.31		rs1800692-?	NR	1E-20				NR [~ 8900000] (imputed)	N
634	chr12	6442642	6442643	rs4149584	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	12p13.31		rs4149584-T	0.019	3E-36		0.3658	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
634	chr12	6442642	6442643	rs4149584	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12p13.31	TNFRSF1A	rs4149584-T	0.022	5E-6		1.58	[1.15-2.17]	Affymetrix, Illumina [~ 2560000] (imputed)	N
634	chr12	6445328	6445329	rs2284344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs2284344-C	0.516332	3E-33		0.026717227	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6445328	6445329	rs2284344	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12p13.31	TNFRSF1A	rs2284344-C	0.518	2E-16		0.03047956	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6445328	6445329	rs2284344	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12p13.31	TNFRSF1A	rs2284344-C	0.518	5E-9		0.02152153	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6445328	6445329	rs2284344	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.31	TNFRSF1A	rs2284344-C	0.5176	1E-9		0.02200321	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6445981	6445982	rs887477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs887477-C	0.522238	2E-17		0.01886747	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6445981	6445982	rs887477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.31	TNFRSF1A	rs887477-A	0.477673	1E-21		0.021403894	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6446776	6446777	rs1860545	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12p13.31	TNFRSF1A	rs1860545-?	NR	3E-17	(subset analysis)			Illumina [130052]	N
634	chr12	6446776	6446777	rs1860545	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12p13.31	PLEKHG6, TNFRSF1A, SCNN1A	rs1860545-A	NR	8E-6		1.16661		Illumina [1233578] (imputed)	N
634	chr12	6446776	6446777	rs1860545	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	12p13.31	LTBR, TNFRSF1A	rs1860545-C	0.605	8E-10	(EA)	1.13		Illumina [128935]	N
634	chr12	6446776	6446777	rs1860545	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	12p13.31	LTBR, TNFRSF1A	rs1860545-C	0.605	3E-10		1.13		Illumina [128935]	N
634	chr12	6447521	6447522	rs4149577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12p13.31		rs4149577-A	NR	3E-10		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
634	chr12	6447521	6447522	rs4149577	34482816	Xie C	2021-09-06	BMC Genom Data	Genome-wide association study identifies new loci associated with noise-induced tinnitus in Chinese populations.	Tinnitus in noise exposure	65 Chinese ancestry male cases, 233 Chinese ancestry male controls	34 Chinese ancestry male cases, 379 Chinese ancestry male controls	12p13.31		rs4149577-A	NR	7E-6		2.05	[1.89-2.51]	Illumina [3830431] (imputed)	N
634	chr12	6447521	6447522	rs4149577	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12p13.31	TNFRSF1A	rs4149577-A	0.5171	1E-16		0.02984807	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6449114	6449115	rs4149576	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	12p13.31	TNFRSF1A	rs4149576-A	0.113	4E-9		1.37	[1.23-1.52]	Illumina [776516]	N
634	chr12	6463344	6463345	rs58854337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	12p13.31	NR	rs58854337-?	NR	8E-6		0.4288	[0.23-0.63] unit decrease	Illumina [at least 560000] (imputed)	N
634	chr12	6466080	6466081	rs3782724	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12p13.31	SCNN1A	rs3782724-G	0.04	3E-7		1.47	[1.27-171]	Affymetrix [~ 2000000] (imputed)	N
634	chr12	6472751	6472752	rs55797039	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12p13.31	SCNN1A	rs55797039-A	0.016	6E-7	(Other antihistamines for systemic use [R06AX])	5.32		Illumina [16500000] (imputed)	N
634	chr12	6491124	6491125	rs7954567	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	12p13.31	LTBR	rs7954567-?		3E-6				Illumina [9725440] (imputed)	N
634	chr12	6491124	6491125	rs7954567	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	12p13.31	LTBR	rs7954567-?		5E-9				Illumina [9560910] (imputed)	N
634	chr12	6491124	6491125	rs7954567	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	12p13.31	CD27, TNFRSF1A, LTBR	rs7954567-A	0.3338	1E-9	(EA)	1.0857501	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
634	chr12	6491124	6491125	rs7954567	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	12p13.31	LTBR, TNFRSF1A	rs7954567-A	0.341	1E-7	(conditioned on rs1860545, EA)	1.11		Illumina [128935]	N
634	chr12	6491256	6491256	rs5796229	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	12p13.31	LTBR, SCNN1A	rs5796229-?	0.691	5E-8		0.0230547	[0.015-0.031] unit increase	Illumina [13519193] (imputed)	N
634	chr12	6492648	6492649	rs11064157	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		TNFRSF1A, LTBR, SCNN1A	rs11064157-A	0.25	2E-9	(conditioned on rs1800693)	1.23	[1.15-1.32]	Illumina [237619] (imputed)	N
634	chr12	6493099	6493100	rs28999107	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12p13.31	LTBR	rs28999107-T	0.4524	3E-11		0.02488397	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6493350	6493351	rs10849448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p13.31		rs10849448-G	NR	4E-58		0.0399	[0.035-0.045] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
634	chr12	6493350	6493351	rs10849448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12p13.31		rs10849448-G	NR	5E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
634	chr12	6493350	6493351	rs10849448	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12p13.31	LTBR	rs10849448-A	0.25	1E-9		6.09	z-score increase	Affymetrix [4314223] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.31	LTBR	rs10849448-G	0.752878	1E-25		0.028621664	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p13.31	LTBR	rs10849448-G	0.752878	1E-11		0.017943025	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.31	LTBR	rs10849448-G	0.75291	1E-122		0.06190974	[0.057-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.31	LTBR	rs10849448-A	0.247064	1E-102		0.05843754	[0.053-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.31	LTBR	rs10849448-G	0.752919	5E-16		0.021238469	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs10849448-G	0.765285	4E-109				Affymetrix, Illumina [23467995] (imputed)	N
634	chr12	6493350	6493351	rs10849448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p13.31	NR	rs10849448-G	0.753266	3E-111		0.050144	[0.046-0.055] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
634	chr12	6493350	6493351	rs10849448	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	12p13.31	LTBR	rs10849448-G	0.81	2E-18		0.05	NR unit decrease	Illumina [9591901] (imputed)	N
634	chr12	6493350	6493351	rs10849448	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	12p13.31	LTBR	rs10849448-G	0.75	4E-22		0.013	unit increase	NR [NR]	N
634	chr12	6493350	6493351	rs10849448	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12p13.31	LTBR	rs10849448-A	0.25	2E-35		1.13	[1.12-1.14]	Illumina [at least 560000] (imputed)	N
634	chr12	6493350	6493351	rs10849448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12p13.31	LTBR	rs10849448-G	0.7569	4E-46		0.06151777	[0.053-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6493350	6493351	rs10849448	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12p13.31	LTBR	rs10849448-G	0.7568	7E-27		0.04643565	[0.038-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6493350	6493351	rs10849448	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12p13.31	LTBR	rs10849448-?	NR	2E-35		1.1273957	[1.11-1.15]	Illumina [13757430] (imputed)	N
634	chr12	6493350	6493351	rs10849448	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	12p13.31	LTBR	rs10849448-A	0.24	5E-9	(additive model)	1.24	[1.15-1.33]	Illumina [123003]	N
634	chr12	6495274	6495275	rs2364480	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12p13.31		rs2364480-C	0.258	4E-18				Affymetrix [10369434] (imputed)	N
634	chr12	6497259	6497260	rs2364481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	12p13.31		rs2364481-G	0.809609	3E-8		0.0311037	[0.02-0.042] unit increase	Illumina [13471431] (imputed)	N
634	chr12	6497259	6497260	rs2364481	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p13.31		rs2364481-A	0.259	8E-21				Affymetrix [10369434] (imputed)	N
634	chr12	6497259	6497260	rs2364481	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12p13.31		rs2364481-A	0.259	3E-69				Affymetrix [10369434] (imputed)	N
634	chr12	6498733	6498734	rs7977602	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12p13.31	LTBR	rs7977602-G	0.659	4E-7		0.0171784	[0.011-0.024] unit increase	Illumina [13520550] (imputed)	N
634	chr12	6499532	6499533	rs2286599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.31		rs2286599-A	NR	6E-19		0.0308	[0.024-0.038] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
634	chr12	6499532	6499533	rs2286599	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.31		rs2286599-G	0.858	2E-39				Affymetrix [10369434] (imputed)	N
634	chr12	6499532	6499533	rs2286599	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	12p13.31		rs2286599-G	0.858	2E-11				Affymetrix [10369434] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.31	LTBR	rs2286599-A	0.141732	6E-32		0.03761744	[0.031-0.044] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12p13.31	LTBR	rs2286599-A	0.141781	8E-11		0.0208954	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs2286599-A	0.140546	4E-40				Affymetrix, Illumina [24649327] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p13.31	NR	rs2286599-A	0.141477	1E-43		0.03864	[0.033-0.044] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs2286599-A	0.139881	3E-12				Affymetrix, Illumina [19905671] (imputed)	N
634	chr12	6499532	6499533	rs2286599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12p13.31	NR	rs2286599-A	0.141728	1E-14		0.023189	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
634	chr12	6499532	6499533	rs2286599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.31		rs2286599-?	NR	2E-28				NR [~ 8900000] (imputed)	N
634	chr12	6502130	6502131	rs2364482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs2364482-G	0.197138	3E-38		0.03594232	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6502130	6502131	rs2364482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs2364482-G	0.197163	9E-29		0.03200532	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6502259	6502260	rs11611855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs11611855-T	0.417324	2E-10		0.014672653	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6502259	6502260	rs11611855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs11611855-T	0.417455	4E-11		0.0168511	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6502259	6502260	rs11611855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs11611855-T	0.417465	1E-10		0.014401719	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6502259	6502260	rs11611855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.31	NR	rs11611855-T	0.417324	1E-12		0.013955	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
634	chr12	6502741	6502742	rs11616188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs11616188-A	0.424654	3E-14		0.016988536	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6502741	6502742	rs11616188	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12p13.31	LTBR	rs11616188-?	NR	3E-14	(subset analysis)			Illumina [130052]	N
634	chr12	6502741	6502742	rs11616188	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	12p13.31	LTBR-TNFRSF1A	rs11616188-A	0.43	4E-12				Illumina [2223620] (imputed)	N
634	chr12	6502831	6502832	rs10466905	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	12p13.31		rs10466905-G	0.81	1E-22				Affymetrix [10369434] (imputed)	N
634	chr12	6502831	6502832	rs10466905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs10466905-A	0.190168	4E-137				Affymetrix, Illumina [23472807] (imputed)	N
634	chr12	6502831	6502832	rs10466905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.31	NR	rs10466905-A	0.190033	7E-140		0.061958	[0.057-0.067] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
634	chr12	6502831	6502832	rs10466905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs10466905-A	0.1918	3E-18		0.0399174	[0.031-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6502831	6502832	rs10466905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs10466905-A	0.1918	1E-11		0.03162751	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6502831	6502832	rs10466905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs10466905-A	0.1919	3E-9		0.02756545	[0.018-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6502831	6502832	rs10466905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs10466905-A	0.1917	2E-55		0.07213908	[0.063-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6503499	6503500	rs12296430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p13.31		rs12296430-C	NR	2E-67		0.0528	[0.047-0.059] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
634	chr12	6503499	6503500	rs12296430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs12296430-C	0.188614	7E-31		0.0340876	[0.028-0.04] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6503499	6503500	rs12296430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs12296430-C	0.188648	6E-34		0.03594291	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6503499	6503500	rs12296430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs12296430-C	0.188636	2E-81		0.056340773	[0.051-0.062] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6503499	6503500	rs12296430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs12296430-C	0.1878	3E-20		0.04239733	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6503499	6503500	rs12296430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12p13.31	RP1-102E24.8	rs12296430-C	0.1878	8E-24		0.0462941	[0.037-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6503499	6503500	rs12296430	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	12p13.31	LTBR	rs12296430-C	0.21	7E-14		1.12		Illumina [161311]	N
634	chr12	6506389	6506390	rs12425441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs12425441-G	0.73786	9E-16		0.021403616	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6506389	6506390	rs12425441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	RP1-102E24.8	rs12425441-G	0.737859	6E-16		0.021466132	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
634	chr12	6509885	6509886	rs111893804	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12p13.31	SCNN1A	rs111893804-?	NR	1E-12		0.0521	NR L increase	Affymetrix [9390170] (imputed)	N
634	chr12	6511656	6511657	rs4020660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31		rs4020660-A	0.464	7E-18		0.019809976	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr12	6511656	6511657	rs4020660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12p13.31	intergenic	rs4020660-A	0.4636	4E-32		0.04369005	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
634	chr12	6511995	6511996	rs2364484	31591516	Ricano-Ponce I	2019-10-07	Eur J Hum Genet	Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.	Celiac disease	12,567 European ancestry cases, 381 Hispanic cases, 14,013 European ancestry controls, 813 Hispanic controls	NA	12p13.31	LTBR	rs2364484-C	0.28	5E-9		1.13		Illumina [127855]	N
634	chr12	6514962	6514963	rs2364485	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LTA;LTB	5,356 Icelandic ancestry individuals	NA	12p13.31		rs2364485-A	0.1469	3E-22		0.250565	[0.2-0.3] unit increase	Illumina [7506463] (imputed)	N
634	chr12	6514962	6514963	rs2364485	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.31	LTBR	rs2364485-A	NR	2E-20		1.1158223	NR	Affymetrix, Illumina [8278136] (imputed)	N
634	chr12	6528330	6528331	rs190308832	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.31	NR	rs190308832-T	0.01045	8E-9	(PLD3)	0.02929	NR unit increase	Illumina [1671387] (imputed)	N
634	chr12	6545416	6545417	rs7980991	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p13.31		rs7980991-C	0.22	5E-20		9.16	z score increase	Affymetrix [9061022] (imputed)	N
634	chr12	6545416	6545417	rs7980991	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p13.31		rs7980991-C	0.22	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
634	chr12	6545416	6545417	rs7980991	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p13.31	NR	rs7980991-C	0.2299	2E-12				NR [9056863] (imputed)	N
634	chr12	6545416	6545417	rs7980991	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	12p13.31		rs7980991-?	NR	2E-10				NR [9705931] (imputed)	N
634	chr12	6545416	6545417	rs7980991	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12p13.31	NR	rs7980991-A	0.7521	9E-9	(Superior Parietal)	19.776712	[13.04-26.51] unit decrease	Affymetrix, Illumina [NR]	N
634	chr12	6553015	6553016	rs2250246	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2250246-G	0.5340400000000001	3E-8		0.1359	[0.088-0.184] unit increase	Illumina [18238287] (imputed)	N
634	chr12	6553015	6553016	rs2250246	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2250246-G	0.5339	2E-9		0.1466	[0.099-0.194] unit increase	Illumina [18238311] (imputed)	N
634	chr12	6553015	6553016	rs2250246	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2250246-G	0.5339	7E-17		0.2059	[0.16-0.25] unit decrease	Illumina [18238311] (imputed)	N
634	chr12	6553015	6553016	rs2250246	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38+ B cell	3,642 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2250246-G	0.5340400000000001	1E-11		0.1679	[0.12-0.22] unit decrease	Illumina [18233708] (imputed)	N
635	chr12	6554627	6554628	rs25680	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs25680-A	0.16715	7E-15		0.2612	[0.2-0.33] unit decrease	Illumina [18238284] (imputed)	N
635	chr12	6554627	6554628	rs25680	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs25680-A	0.16724	4E-21		0.3147	[0.25-0.38] unit decrease	Illumina [18238311] (imputed)	N
635	chr12	6554627	6554628	rs25680	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs25680-A	0.16715	1E-8		0.1925	[0.13-0.26] unit decrease	Illumina [18238284] (imputed)	N
635	chr12	6554627	6554628	rs25680	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs25680-A	0.16724	3E-15		0.2616	[0.2-0.33] unit decrease	Illumina [18238311] (imputed)	N
635	chr12	6557673	6557674	rs2253610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2253610-A	0.5779099999999999	2E-13		0.1829	[0.13-0.23] unit decrease	Illumina [18238311] (imputed)	N
635	chr12	6560572	6560573	rs1059501	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.31	CD27-AS1	rs1059501-T	NR	6E-7		1.0588734	NR	Affymetrix, Illumina [8278136] (imputed)	N
635	chr12	6563398	6563399	rs3782729	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAPBPL	5,368 Icelandic ancestry individuals	NA	12p13.31		rs3782729-G	0.2153	4E-25		0.241661	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
635	chr12	6564209	6564210	rs2532497	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	TAPBPL	rs2532497-A	0.274	4E-1297	(Tapasin-related protein, TAPBPL.6364.7.3)	1.26	[1.22-1.3] unit increase	Affymetrix [10572788] (imputed)	N
635	chr12	6572190	6572191	rs12964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.31		rs12964-?	NR	7E-8				NR [~ 8900000] (imputed)	N
635	chr12	6572190	6572191	rs12964	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	TAPBPL	rs12964-C	0.49046875	3E-362	(TAPBPL, 6364_7_3)	0.897216	[0.86-0.93] unit increase	Illumina [> 1000000] (imputed)	N
635	chr12	6572190	6572191	rs12964	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	NR	rs12964-C	0.489	2E-633	(Tapasin-related protein, TAPBPL.6364.7.3)	0.96	[0.92-1] unit increase	Affymetrix [10572788] (imputed)	N
635	chr12	6580581	6580582	rs10492096	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	12p13.31	VAMP1	rs10492096-?	NR	3E-6	(ShaftZ1rf)			Affymetrix [70897]	N
635	chr12	6605298	6605299	rs147714617	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs147714617-T	0.12237	1E-11		0.2563	[0.18-0.33] unit increase	Illumina [18238311] (imputed)	N
635	chr12	6621250	6621251	rs10849478	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs10849478-C	0.46453125	6E-218	(TAPBPL, 6364_7_3)	0.7364076	[0.69-0.78] unit increase	Illumina [> 1000000] (imputed)	N
635	chr12	6621250	6621251	rs10849478	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	GAPDH	rs10849478-C	0.46453125	1E-7	(GAPDH, 3848_14_2)	0.13280359	[0.084-0.182] unit increase	Illumina [> 1000000] (imputed)	N
635	chr12	6643315	6643316	rs6489721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12p13.31		rs6489721-C	0.459347	7E-9		0.0180732	[0.012-0.024] unit increase	Illumina [13479135] (imputed)	N
635	chr12	6652680	6652681	rs536314051	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	12p13.31	RP5-940J5.8, IFFO1	rs536314051-A	0.0063	3E-6		0.4954	[0.29-0.7] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
635	chr12	6663387	6663388	rs56848735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12p13.31		rs56848735-T	NR	4E-13		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
635	chr12	6681785	6681786	rs67013744	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p13.31	NR	rs67013744-G	0.1604	4E-8		0.035	[0.022-0.048] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
635	chr12	6683286	6683287	rs1057510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p13.31		rs1057510-A	NR	7E-10		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
635	chr12	6683286	6683287	rs1057510	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		12p13.31	CHD4	rs1057510-?	0.154	6E-6			[NR]	Affymetrix, Illumina [152234]	N
636	chr12	6691451	6691452	rs7316626	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p13.31	NR	rs7316626-G	0.7968	3E-9		0.0322	[0.022-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
636	chr12	6706743	6706744	rs7308584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p13.31		rs7308584-?	NR	2E-12				NR [~ 8900000] (imputed)	N
636	chr12	6711146	6711147	rs1639122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.31	CHD4	rs1639122-A	0.436668	4E-13		0.016785143	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr12	6711146	6711147	rs1639122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs1639122-A	0.445245	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
636	chr12	6711146	6711147	rs1639122	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	12p13.31	NR	rs1639122-C	0.56	7E-6		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
636	chr12	6711146	6711147	rs1639122	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	12p13.31	NR	rs1639122-C	0.56	4E-8		0.01	[0.0061-0.0139] unit decrease	NR [7369691] (imputed)	N
636	chr12	6711146	6711147	rs1639122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.31		rs1639122-?	NR	3E-9				NR [~ 8900000] (imputed)	N
636	chr12	6711146	6711147	rs1639122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.31		rs1639122-?	NR	1E-11				NR [~ 8900000] (imputed)	N
636	chr12	6720794	6720795	rs10849492	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.31	CHD4	rs10849492-A	0.816791	2E-9		0.0142951	[0.0096-0.019] unit decrease	NR [13737936] (imputed)	N
636	chr12	6725536	6725539	rs142808708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.31	LPAR5	rs142808708-A	0.31672	2E-11		0.016441045	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
636	chr12	6728522	6728527	rs71745963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12p13.31	LPAR5	rs71745963-A	0.814741	5E-13		0.020953387	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
636	chr12	6731817	6731818	rs10774439	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p13.31	LPAR5	rs10774439-G	0.185108	1E-16		0.0205218	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
636	chr12	6733888	6733889	rs7134035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12p13.31	LPAR5	rs7134035-C	0.18433	1E-10		0.0165743	[0.012-0.022] unit decrease	Affymetrix [NR] (imputed)	N
636	chr12	6739496	6739497	rs35104374	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p13.31	LPAR5	rs35104374-T	0.274855	4E-12		0.0156261	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
636	chr12	6739906	6739907	rs7137095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p13.31		rs7137095-A	NR	4E-15		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
636	chr12	6739906	6739907	rs7137095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p13.31		rs7137095-A	NR	8E-12		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
636	chr12	6739906	6739907	rs7137095	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12p13.31		rs7137095-C	0.452	8E-15		0.09	[-0.11--0.07] % decrease	Affymetrix [NR] (imputed)	N
636	chr12	6739906	6739907	rs7137095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.31	LPAR5	rs7137095-A	0.550147	7E-9		0.0184575	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
636	chr12	6739906	6739907	rs7137095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs7137095-A	0.546283	8E-23				Affymetrix, Illumina [24246363] (imputed)	N
636	chr12	6739906	6739907	rs7137095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.31	NR	rs7137095-A	0.552734	4E-23		0.018516	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
636	chr12	6739906	6739907	rs7137095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs7137095-A	0.545173	5E-11				Affymetrix, Illumina [20825802] (imputed)	N
636	chr12	6739906	6739907	rs7137095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.31		rs7137095-?	NR	3E-13				NR [~ 8900000] (imputed)	N
636	chr12	6744863	6744864	rs4764623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.31		rs4764623-?	NR	2E-8				NR [~ 8900000] (imputed)	N
636	chr12	6809895	6809896	rs11064321	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	PIANP	rs11064321-C	0.397	8E-15	(PILR alpha-associated neural protein, PIANP.14114.18.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
636	chr12	6809895	6809896	rs11064321	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	PIANP	rs11064321-C	0.397	5E-17	(PILR alpha-associated neural protein, PIANP.9599.6.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
637	chr12	6831877	6831878	rs34964486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.31	RP4-761J14.9, COPS7A	rs34964486-T	0.388921	2E-9		0.013891853	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
637	chr12	6835067	6835068	rs7487866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.31	NR	rs7487866-G	0.635744	1E-10		0.01244	[0.0087-0.0162] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
637	chr12	6835535	6835536	rs11064334	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p13.31	COPS7A	rs11064334-A	NR	2E-8		0.0265475	[0.017-0.036] unit decrease	Affymetrix [321016] (imputed)	N
637	chr12	6840120	6840121	rs77365023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12p13.31		rs77365023-C	0.91832	9E-9		0.044719	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
637	chr12	6840120	6840121	rs77365023	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12p13.31		rs77365023-C	0.91832	1E-8		0.0442102	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
637	chr12	6854694	6854695	rs7307912	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	12p13.31	MLF2	rs7307912-C	0.7677	1E-6		0.0058	[0.0034-0.0082] unit increase	Affymetrix [~ 7740000] (imputed)	N
637	chr12	6861042	6861043	rs2302367	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p13.31	MLF2	rs2302367-T	0.509376	3E-8		0.0106511	[0.0069-0.0144] unit increase	Affymetrix [NR] (imputed)	N
637	chr12	6862173	6862174	rs13402	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12p13.31	NR	rs13402-G	0.105	9E-9		0.0101787	[0.0067-0.0137] unit increase	NR [9732723] (imputed)	N
637	chr12	6864889	6864890	rs67385163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12p13.31		rs67385163-?	NR	7E-8				NR [~ 8900000] (imputed)	N
637	chr12	6872098	6872099	rs6489734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.31		rs6489734-?	NR	1E-9				NR [~ 8900000] (imputed)	N
637	chr12	6873817	6873818	rs2286729	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12p13.31	NR	rs2286729-A	0.0862	5E-11		1.072	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
637	chr12	6873817	6873818	rs2286729	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12p13.31	NA	rs2286729-A	0.0831	3E-9	(Female)	1.083	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
637	chr12	6877720	6877721	rs17887160	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.31	NR	rs17887160-C	0.719868	5E-11		0.00649339	[0.0046-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
637	chr12	6877720	6877721	rs17887160	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.31	NR	rs17887160-C	0.720025	7E-12		0.00904576	[0.0063-0.0118] unit increase	Affymetrix [16585854] (imputed)	N
637	chr12	6877720	6877721	rs17887160	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.31	NR	rs17887160-C	0.719868	1E-8		0.00624115	[0.0042-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
637	chr12	6877720	6877721	rs17887160	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p13.31	NR	rs17887160-C	0.720025	3E-8		0.00870681	[0.0056-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
637	chr12	6885075	6885076	rs3782735	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAG3	5,364 Icelandic ancestry individuals	NA	12p13.31		rs3782735-G	0.3948	3E-12		0.131741	[0.095-0.169] unit decrease	Illumina [7506463] (imputed)	N
637	chr12	6885075	6885076	rs3782735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12p13.31		rs3782735-A	NR	6E-16		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.31	NR	rs3782735-A	0.600147	1E-21		0.00844855	[0.0067-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.31	NR	rs3782735-A	0.600654	6E-15		0.0101224	[0.0076-0.0126] unit increase	Affymetrix [16585854] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p13.31	NR	rs3782735-A	0.599602	3E-9		0.00707287	[0.0047-0.0094] unit increase	Affymetrix [16582621] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.31	NR	rs3782735-A	0.600147	3E-18		0.00871497	[0.0068-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p13.31	NR	rs3782735-A	0.600654	7E-14		0.0112249	[0.0083-0.0141] unit increase	Affymetrix [16585866] (imputed)	N
637	chr12	6885075	6885076	rs3782735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p13.31	NR	rs3782735-A	0.599602	1E-7		0.00672029	[0.0042-0.0092] unit increase	Affymetrix [16582614] (imputed)	N
637	chr12	6885075	6885076	rs3782735	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	LAG3	rs3782735-A	0.6071875	4E-10	(LAG3, 9950_229_3)	0.15399188	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
637	chr12	6885075	6885076	rs3782735	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	LAG3	rs3782735-A	0.6071875	3E-9	(LAG3, 5099_14_3)	0.14723346	[0.099-0.196] unit increase	Illumina [> 1000000] (imputed)	N
637	chr12	6885409	6885410	rs1882545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p13.31	NR	rs1882545-A	NR	7E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
637	chr12	6894163	6894164	rs7296859	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs7296859-G	0.45459	9E-60		0.4307	[0.38-0.48] unit decrease	Illumina [18030638] (imputed)	N
637	chr12	6900615	6900616	rs2857229	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+CD8+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2857229-G	0.2576	1E-22		0.273	[0.22-0.33] unit increase	Illumina [18427348] (imputed)	N
637	chr12	6900615	6900616	rs2857229	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+CD8+ T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2857229-G	0.25729	4E-26		0.2919	[0.24-0.35] unit increase	Illumina [18430788] (imputed)	N
637	chr12	6900615	6900616	rs2857229	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+CD8+ T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs2857229-G	0.25729	3E-27		0.299	[0.25-0.35] unit increase	Illumina [18430788] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	1E-10		0.2046	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24673	2E-9		0.1847	[0.12-0.24] unit decrease	Illumina [17954460] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	3E-15		0.2479	[0.19-0.31] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on activated & secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	7E-14		0.2367	[0.17-0.3] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Effector Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24646	1E-24		0.3219	[0.26-0.38] unit decrease	Illumina [17945888] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24646	1E-21		0.3032	[0.24-0.36] unit decrease	Illumina [17945888] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD45RA+ CD4+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24655	6E-25		0.3264	[0.26-0.39] unit decrease	Illumina [17945546] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24646	5E-18		0.2753	[0.21-0.34] unit decrease	Illumina [17945888] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	2E-14		0.2417	[0.18-0.3] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	5E-11		0.2062	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6903630	6903631	rs11615628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11615628-A	0.24664	2E-10		0.2032	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
637	chr12	6911436	6911437	rs2855535	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	12p13.31	CD4	rs2855535-?	NR	5E-8				Affymetrix [753382]	N
637	chr12	6923830	6923831	rs11575098	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs11575098-T	0.0492	9E-10		0.3789	[0.26-0.5] unit increase	Illumina [18030638] (imputed)	N
637	chr12	6928213	6928214	rs12298133	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.31		rs12298133-T	0.17509	1E-11		0.2481	[0.18-0.32] unit increase	Illumina [17945511] (imputed)	N
637	chr12	6938871	6938872	rs3741920	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	12p13.31	CD4, LEPREL2, GNB3	rs3741920-T	0.16	4E-6	(alpha-TOH)	0.04	[0.020-0.060] mg/L decrease	Illumina [549989]	N
638	chr12	6954863	6954864	rs5442	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p13.31		rs5442-A	0.071109	1E-7		0.069237	[0.044-0.095] unit decrease	Affymetrix [15580782] (imputed)	N
638	chr12	6954863	6954864	rs5442	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12p13.31		rs5442-A	0.071109	1E-21		0.1267	[0.1-0.15] unit decrease	Affymetrix [15580782] (imputed)	N
638	chr12	6954863	6954864	rs5442	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	12p13.31	NR	rs5442-A	0.07	2E-13		0.69	[0.51-0.87] unit decrease	Affymetrix [9231066] (imputed)	N
638	chr12	6954863	6954864	rs5442	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	12p13.31	NR	rs5442-A	0.07	2E-13		0.69	[0.51-0.87] unit decrease	Affymetrix [9231066] (imputed)	N
638	chr12	6954863	6954864	rs5442	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12p13.31	GNB3	rs5442-?	NR	4E-6		0.228497	[0.13-0.33] unit increase	NR [13958389] (imputed)	N
638	chr12	6954863	6954864	rs5442	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p13.31	NR	rs5442-G		8E-40		0.29	[0.25-0.33] unit increase	NR [NR]	N
638	chr12	6954863	6954864	rs5442	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.31	GNB3, TPI1, SPSB2, USP5, LRRC23, C12orf57, ATN1, PTPN6, PHB2, C1S, RBP5, CLSTN3, PEX5, ACSM4	rs5442-?		3E-62				Affymetrix, Illumina [NR] (imputed)	N
638	chr12	6954863	6954864	rs5442	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	12p13.31	GNB3	rs5442-?	0.067	1E-8		1.3186176	[1.18-1.47]	Affymetrix [NR] (imputed)	N
638	chr12	6954863	6954864	rs5442	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12p13.31	GNB3	rs5442-?	NR	6E-26		1.3657	[1.1-1.63] unit increase	Affymetrix [11100000] (imputed)	N
638	chr12	6954863	6954864	rs5442	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12p13.31	GNB3	rs5442-A	0.0683	5E-15		7.815	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
638	chr12	6954863	6954864	rs5442	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	12p13.31	NR	rs5442-A	0.0662	9E-13		0.0977	[0.071-0.125] unit decrease	Illumina [~ 10600000] (imputed)	N
638	chr12	6954863	6954864	rs5442	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	12p13.31	GNB3	rs5442-?	NR	2E-14		1.1173185	[1.09-1.15]	Illumina [13762925] (imputed)	N
638	chr12	6954863	6954864	rs5442	26567291	Jensen RA	2015-11-13	Circ Cardiovasc Genet	Novel Genetic Loci Associated With Retinal Microvascular Diameter.	Central retinal vein equivalent	14,740 European ancestry individuals, 5,113 Asian ancestry individuals, 3,345 African American individuals, 1,077 Hispanic individuals	5,472 European ancestry individuals	12p13.31	GNB3	rs5442-A	NR	7E-10		0.11	[0.071-0.149] unit decrease	Illumina [223566]	N
638	chr12	6960892	6960893	rs2071058	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPI1	5,367 Icelandic ancestry individuals	NA	12p13.31		rs2071058-T	0.2924	7E-13		0.14841	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
638	chr12	6960892	6960893	rs2071058	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	TPI1	rs2071058-A	0.70140625	3E-8	(TPI1, 4309_59_3)	0.14984576	[0.097-0.202] unit increase	Illumina [> 1000000] (imputed)	N
638	chr12	6965193	6965194	rs2226955	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TKT	5,360 Icelandic ancestry individuals	NA	12p13.31		rs2226955-G	0.2923	5E-17		0.166605	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
638	chr12	6982161	6982162	rs11064437	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	12p13.31	SPSB2	rs11064437-C	0.75	4E-11		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 4000000] (imputed)	N
638	chr12	6994342	6994343	rs11064445	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Exhaled nitric oxide levels	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	12p13.31		rs11064445-A	0.2028	6E-17		0.1177	[0.09-0.146] unit decrease	Affymetrix [8587571] (imputed)	N
638	chr12	6996682	6996683	rs75535814	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	12p13.31	DSTNP2	rs75535814-T		6E-9		7.24	[3.42-11.06] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
638	chr12	6997807	6997808	rs112947941	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12p13.31	NR	rs112947941-?	NR	5E-15		0.331338	[0.25-0.41] unit increase	NR [13958389] (imputed)	N
638	chr12	6997807	6997808	rs112947941	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	12p13.31	NR	rs112947941-?	NR	4E-13		0.274022	[0.2-0.35] unit decrease	NR [13958389] (imputed)	N
638	chr12	6997807	6997808	rs112947941	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		12p13.31	DSTNP2	rs112947941-A	0.931	1E-6		0.028	[0.016-0.04] dioptres increase	NR [5901671] (imputed)	N
638	chr12	6998268	6998269	rs143703503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p13.31		rs143703503-?	NR	5E-8				NR [~ 8900000] (imputed)	N
638	chr12	7015116	7015117	rs149662873	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1/FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	12p13.31	LRRC23	rs149662873-G	7.0E-5	6E-6		4.523	unit decrease	Illumina [179215]	N
638	chr12	7033591	7033592	rs7310941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	12p13.31		rs7310941-A	NR	6E-13		0.0453	[0.033-0.058] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
638	chr12	7055379	7055380	rs741090	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.31	PTPN6x3bC12orf57	rs741090-?	NR	2E-8		0.020990191	[0.014-0.028] unit increase	Illumina [27896057] (imputed)	N
638	chr12	7058580	7058581	rs117155472	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	12p13.31		rs117155472-?	NR	7E-6		0.21	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
638	chr12	7065405	7065406	rs7963446	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	12p13.31		rs7963446-?	NR	6E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
638	chr12	7071128	7071129	rs113837888	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	12p13.31	PTPN6	rs113837888-?	NR	4E-10		0.05012	[0.034-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
638	chr12	7073804	7073805	rs16933011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	12p13.31	NR	rs16933011-G	0.904951	2E-12		0.047843	[0.035-0.061] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
638	chr12	7075881	7075882	rs2110073	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	12p13.31	PHB2	rs2110073-T	0.0627	6E-7		0.0306	[0.018-0.043] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
638	chr12	7075881	7075882	rs2110073	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12p13.31	PHB2	rs2110073-T	0.0964	6E-9		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
638	chr12	7075881	7075882	rs2110073	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	12p13.31	PHB2	rs2110073-T	0.1097	4E-8		0.0153	[0.0098-0.0208] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
638	chr12	7075881	7075882	rs2110073	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	12p13.31	PHB2, MBOAT5, PTPN6, C1S	rs2110073-T	0.09	3E-49	(OA)	0.28	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
639	chr12	7079562	7079563	rs73264607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	12p13.31		rs73264607-G	0.092618	4E-13		0.0452799	[0.033-0.058] unit decrease	Illumina [13477028] (imputed)	N
639	chr12	7085170	7085171	rs12579775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs12579775-A	0.0986987	5E-12				Affymetrix, Illumina [21126107] (imputed)	N
639	chr12	7085170	7085171	rs12579775	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Oleic acid (18:1n-9) levels	3,521 Chinese ancestry individuals, European ancestry individuals (see Wu et al 2013)	NA	12p13.31	LPCAT3	rs12579775-A	0.032	2E-8	(Chinese)	0.539	[0.35-0.73] unit decrease	Affymetrix, Illumina [2200000] (imputed)	N
639	chr12	7089612	7089613	rs61170325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p13.31		rs61170325-G	NR	2E-17		0.0311	[0.024-0.038] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
639	chr12	7100972	7100973	rs12580543	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	12p13.31	MBOAT5, PHB2, PTPN6, C1S	rs12580543-C	0.06	3E-30	(LA)	0.21	[NR] unit increase	Affymetrix [~ 2500000] (imputed)	N
639	chr12	7104805	7104806	rs75151422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12p13.31	NR	rs75151422-C	NR	1E-9		0.0565	[0.038-0.075] unit increase	Affymetrix [9000000] (imputed)	N
639	chr12	7111061	7111062	rs3867477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.31	C1S, LPCAT3	rs3867477-C	0.27611	2E-9		0.015165568	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
639	chr12	7111061	7111062	rs3867477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.31	C1S, LPCAT3	rs3867477-C	0.27608	9E-10		0.015404952	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
639	chr12	7111061	7111062	rs3867477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12p13.31	NR	rs3867477-C	0.276603	2E-10		0.014753	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
639	chr12	7112901	7112902	rs60015123	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12p13.31	LPCAT3, C1S	rs60015123-C	0.0816	2E-17		0.05470084	[0.042-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
639	chr12	7130664	7130665	rs55645776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12p13.31	C1S	rs55645776-C	0.0824820000000001	7E-36		0.050423432	[0.043-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr12	7130664	7130665	rs55645776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs55645776-T	0.903602	4E-42				Affymetrix, Illumina [22063850] (imputed)	N
639	chr12	7130664	7130665	rs55645776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12p13.31	NR	rs55645776-T	0.916318	3E-44		0.047684	[0.041-0.054] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
639	chr12	7131013	7131014	rs73264674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.31	C1S	rs73264674-T	0.080653	3E-16		0.033779386	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr12	7153079	7153079	rs111546134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.31	C1S	rs111546134-CT	0.078658	4E-15		0.03295945	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr12	7165113	7165114	rs7311672	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	12p13.31	C1S	rs7311672-?	NR	3E-6			NR	Affymetrix [2067592] (imputed)	N
639	chr12	7166671	7166672	rs7962738	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	12p13.31	LPCAT3, C1S	rs7962738-A	0.056746761	9E-6		1.4109263	[1.212315484-1.642075099]	Illumina [10439017] (imputed)	N
639	chr12	7166769	7166770	rs7962629	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA9	5,347 Icelandic ancestry individuals	NA	12p13.31		rs7962629-G	0.1305	6E-16		0.217163	[0.16-0.27] unit decrease	Illumina [7506463] (imputed)	N
639	chr12	7166769	7166770	rs7962629	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	12p13.31	LPCAT3, C1S	rs7962629-?	NR	1E-9		0.08318	[0.056-0.11] unit decrease novel	Illumina [6108953] (imputed)	N
639	chr12	7169660	7169661	rs11064497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p13.31	NR	rs11064497-T	NR	3E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr12	7170335	7170336	rs12146727	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKN1	5,357 Icelandic ancestry individuals	NA	12p13.31		rs12146727-A	0.1131	1E-132		0.676244	[0.62-0.73] unit increase	Illumina [7506463] (imputed)	N
639	chr12	7170335	7170336	rs12146727	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DVL2	5,357 Icelandic ancestry individuals	NA	12p13.31		rs12146727-A	0.1131	4E-55		0.449692	[0.39-0.51] unit decrease	Illumina [7506463] (imputed)	N
639	chr12	7170335	7170336	rs12146727	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASQ1	5,351 Icelandic ancestry individuals	NA	12p13.31		rs12146727-A	0.1131	4E-250		0.819607	[0.77-0.87] unit increase	Illumina [7506463] (imputed)	N
639	chr12	7170335	7170336	rs12146727	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12p13.31	C1S	rs12146727-A	0.1315261	3E-35	(Complement C1r subcomponent)	0.7797	[0.66-0.9] unit decrease	Affymetrix [509946]	N
639	chr12	7170335	7170336	rs12146727	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12p13.31	C1S	rs12146727-A	0.1315261	2E-15	(Complement C1q subcomponent)	0.5091	[0.39-0.63] unit decrease	Affymetrix [509946]	N
639	chr12	7171506	7171507	rs11064498	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs11064498-G	0.145	1E-13	(Serpin A9, SERPINA9.7266.4.3)	0.26	[0.18-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	8E-92	(PTPN4, 14254_27_3)	0.7565942	[0.69-0.83] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	4E-36	(C1R, 3285_23_2)	0.4803195	[0.41-0.55] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	4E-35	(DVL2, 13575_40_3)	0.46278626	[0.39-0.54] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	4E-24	(SCIN, 12684_5_3)	0.38020995	[0.31-0.45] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	4E-10	(SERPINA9, 7266_4_3)	0.23369193	[0.16-0.31] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	2E-9	(DGKB, 12895_28_3)	0.23130701	[0.16-0.31] unit increase	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	2E-144	(CASQ1, 11263_57_3)	0.934296	[0.87-1] unit decrease	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs16933084-A	0.88265625	1E-81	(PKN1, 12562_1_3)	0.72041756	[0.65-0.79] unit decrease	Illumina [> 1000000] (imputed)	N
639	chr12	7172083	7172084	rs16933084	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs16933084-T	0.133	1E-69	(Segment polarity protein dishevelled homolog DVL-2, DVL2.13575.40.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
639	chr12	7172901	7172902	rs77620124	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12p13.31	C1S	rs77620124-?	NR	9E-9		0.0425819	[0.028-0.057] unit decrease	Illumina [4804024] (imputed)	N
639	chr12	7175871	7175872	rs11838267	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12p13.31	C1S	rs11838267-T	0.8679	6E-10		0.0514	[0.035-0.068] unit increase	Affymetrix [at least 7947838] (imputed)	N
639	chr12	7175871	7175872	rs11838267	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12p13.31	C1S	rs11838267-T	0.868	1E-9		0.058	[0.04-0.076] unit increase	Affymetrix [7947838] (imputed)	N
639	chr12	7176203	7176204	rs10849546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1R	5,362 Icelandic ancestry individuals	NA	12p13.31		rs10849546-A	0.1132	7E-55		0.454824	[0.4-0.51] unit decrease	Illumina [7506463] (imputed)	N
639	chr12	7176203	7176204	rs10849546	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs10849546-A	0.132	3E-18	(Sulfhydryl oxidase 1, QSOX1.6070.11.3)	0.31	[0.23-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
639	chr12	7176977	7176978	rs12371227	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCIN	5,343 Icelandic ancestry individuals	NA	12p13.31		rs12371227-T	0.1133	1E-38		0.358161	[0.3-0.41] unit decrease	Illumina [7506463] (imputed)	N
639	chr12	7176977	7176978	rs12371227	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN4	5,356 Icelandic ancestry individuals	NA	12p13.31		rs12371227-T	0.1133	3E-146		0.7111	[0.66-0.77] unit decrease	Illumina [7506463] (imputed)	N
639	chr12	7181104	7181105	rs12368181	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs12368181-G	0.133	2E-24	(Interleukin-21, IL21.7124.18.3)	0.37	[0.29-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
639	chr12	7181104	7181105	rs12368181	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs12368181-G	0.133	2E-17	(Tyrosine-protein phosphatase non-receptor type 4, PTPN4.14254.27.3)	0.31	[0.23-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
639	chr12	7181774	7181776	rs146901797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1S	rs146901797-T	0.138	2E-21	(Amyloid beta A4 precursor protein-binding family B member 2, APBB2.12761.12.3)	0.34	[0.26-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
640	chr12	7241054	7241055	rs36136293	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPN4	5,356 Icelandic ancestry individuals	NA	12p13.31		rs36136293-G	0.09344	3E-93		0.632951	[0.57-0.69] unit increase	Illumina [7506463] (imputed)	N
640	chr12	7241054	7241055	rs36136293	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DGKB	5,366 Icelandic ancestry individuals	NA	12p13.31		rs36136293-G	0.09344	3E-20		0.301785	[0.24-0.37] unit increase	Illumina [7506463] (imputed)	N
640	chr12	7241569	7241570	rs3813728	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	12p13.31	NR	rs3813728-?	NR	5E-16	(Complement C1r subcomponent)			Illumina [514227]	N
640	chr12	7242203	7242204	rs1126605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCIN	5,343 Icelandic ancestry individuals	NA	12p13.31		rs1126605-T	0.09326	2E-32		0.359163	[0.3-0.42] unit increase	Illumina [7506463] (imputed)	N
640	chr12	7242203	7242204	rs1126605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB1A1	5,344 Icelandic ancestry individuals	NA	12p13.31		rs1126605-T	0.09326	4E-129		0.687562	[0.63-0.74] unit increase	Illumina [7506463] (imputed)	N
640	chr12	7242203	7242204	rs1126605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT2	5,366 Icelandic ancestry individuals	NA	12p13.31		rs1126605-T	0.09326	2E-25		0.339158	[0.28-0.4] unit increase	Illumina [7506463] (imputed)	N
640	chr12	7242203	7242204	rs1126605	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1RL	rs1126605-T	0.086	1E-15	(Adseverin, SCIN.12684.5.3)	0.35	[0.27-0.43] unit increase	Affymetrix [10572788] (imputed)	N
640	chr12	7242739	7242740	rs139531404	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1RL	rs139531404-G	0.005	1E-18	(Diacylglycerol kinase beta, DGKB.12895.28.3)	1.54	[1.19-1.89] unit decrease	Affymetrix [10572788] (imputed)	N
640	chr12	7246893	7246894	rs6488561	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1RL	5,332 Icelandic ancestry individuals	NA	12p13.31		rs6488561-A	0.3005	8E-32		0.200984	[0.17-0.23] unit decrease	Illumina [7506463] (imputed)	N
640	chr12	7246893	7246894	rs6488561	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	C1RL	rs6488561-G	0.6953125	6E-24	(C1RL, 9348_1_3)	0.27043486	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
640	chr12	7246893	7246894	rs6488561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	NR	rs6488561-A	0.273	3E-26	(Complement C1r subcomponent-like protein, C1RL.9348.1.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
640	chr12	7254685	7254686	rs191448232	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	C1RL	rs191448232-C	0.012	6E-61	(Complement C1r subcomponent-like protein, C1RL.9348.1.3)	1.91	[1.67-2.15] unit decrease	Affymetrix [10572788] (imputed)	N
640	chr12	7266804	7266805	rs7294478	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	12p13.31	intergenic	rs7294478-G	0.5847	2E-6	(Case/control)	0.3434	[0.2-0.49] unit increase	Affymetrix, Illumina [NR] (imputed)	N
640	chr12	7266804	7266805	rs7294478	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	12p13.31	intergenic	rs7294478-G	0.5808	2E-6	(Ordinal)	0.2385	[0.14-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
640	chr12	7275151	7275152	rs3813735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.31	RNU6-485P, C1RL-AS1, RBP5	rs3813735-G	0.229975	6E-9		0.01547936	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
640	chr12	7275545	7275546	rs10845160	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs10845160-C	0.104653	5E-11				Affymetrix, Illumina [24588908] (imputed)	N
640	chr12	7287885	7287886	rs6488452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p13.31		rs6488452-C	NR	7E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
640	chr12	7291205	7291206	rs3759413	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p13.31	CLSTN3	rs3759413-T	NR	1E-6	(East Asian)	1.108	[1.07-1.15]	Illumina [6627481] (imputed)	N
640	chr12	7291205	7291206	rs3759413	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12p13.31	intergenic	rs3759413-C	NR	2E-7	(Chinese)	1.127	[1.08-1.17]	Affymetrix, Illumina [up to 5107227] (imputed)	N
640	chr12	7295927	7295928	rs113899462	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1RL	5,332 Icelandic ancestry individuals	NA	12p13.31		rs113899462-A	0.03138	1E-15		0.358309	[0.27-0.45] unit decrease	Illumina [7506463] (imputed)	N
640	chr12	7334812	7334813	rs7973719	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.31	NR	rs7973719-C	0.487491611566485	4E-8	(IGP41)	0.1772	[0.11-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
640	chr12	7335216	7335217	rs12828421	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.31	PEX5	rs12828421-C	0.513425077202543	9E-7	(IGP1)	0.1591	[0.096-0.223] unit decrease	Illumina [~ 2500000] (imputed)	N
640	chr12	7339350	7339351	rs77007122	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1RL	5,332 Icelandic ancestry individuals	NA	12p13.31		rs77007122-C	0.01874	1E-31		0.685293	[0.57-0.8] unit decrease	Illumina [7506463] (imputed)	N
641	chr12	7360228	7360229	rs3816424	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	12p13.31		rs3816424-C	0.72	2E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
641	chr12	7360228	7360229	rs3816424	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	12p13.31		rs3816424-C	0.72	3E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
641	chr12	7378286	7378287	rs188635171	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	12p13.31	intergenic	rs188635171-A	0.009	7E-7		1.087	[0.66-1.52] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
642	chr12	7507725	7507726	rs8815	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPI	5,364 Icelandic ancestry individuals	NA	12p13.31		rs8815-G	0.3662	7E-29		0.217257	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
642	chr12	7519825	7519826	rs7974006	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPI	5,364 Icelandic ancestry individuals	NA	12p13.31		rs7974006-G	0.07983	3E-13		0.254182	[0.19-0.32] unit increase	Illumina [7506463] (imputed)	N
642	chr12	7524430	7524431	rs34985304	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	12p13.31	NR	rs34985304-?	NR	1E-41		0.1366	[0.12-0.16] unit decrease novel	Illumina [6108953] (imputed)	N
642	chr12	7528191	7528192	rs138525217	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	12p13.31	CD163L1	rs138525217-T	0.01	6E-23		75.98	[32.13-179.7]	Affymetrix [508192]	N
642	chr12	7539259	7539260	rs7485194	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UGP2	5,366 Icelandic ancestry individuals	NA	12p13.31		rs7485194-C	0.04438	2E-14		0.356057	[0.26-0.45] unit decrease	Illumina [7506463] (imputed)	N
642	chr12	7539259	7539260	rs7485194	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMA7	5,367 Icelandic ancestry individuals	NA	12p13.31		rs7485194-C	0.04438	6E-21		0.430922	[0.34-0.52] unit decrease	Illumina [7506463] (imputed)	N
642	chr12	7539259	7539260	rs7485194	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPI	5,364 Icelandic ancestry individuals	NA	12p13.31		rs7485194-C	0.04438	2E-103		0.957805	[0.87-1.04] unit decrease	Illumina [7506463] (imputed)	N
642	chr12	7548968	7548969	rs145411783	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	12p13.31		rs145411783-A	0.0066	9E-12		0.203	unit increase	Illumina [28300000] (imputed)	N
642	chr12	7549008	7549009	rs4072797	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in statin users	6,266 Icelandic ancestry individuals	NA	12p13.31		rs4072797-?	NR	7E-9		0.206	unit decrease	Illumina [28300000] (imputed)	N
642	chr12	7549008	7549009	rs4072797	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	12p13.31		rs4072797-?	NR	2E-18		0.276	unit decrease	Illumina [28300000] (imputed)	N
642	chr12	7549008	7549009	rs4072797	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	12p13.31		rs4072797-T	0.0421	1E-88		0.236	unit decrease	Illumina [28300000] (imputed)	N
642	chr12	7560269	7560270	rs115655239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDHB	5,362 Icelandic ancestry individuals	NA	12p13.31		rs115655239-T	0.04447	2E-11		0.311527	[0.22-0.4] unit decrease	Illumina [7506463] (imputed)	N
642	chr12	7561027	7561028	rs12316441	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	12p13.31	CD163L1	rs12316441-?	NR	9E-470		0.2534	[0.24-0.26] unit decrease novel	Illumina [6108953] (imputed)	N
642	chr12	7571499	7571500	rs79461431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.31		rs79461431-G	0.157229	3E-9		0.0163862	[0.011-0.022] unit increase	Illumina [13479295] (imputed)	N
642	chr12	7591276	7591277	rs74754250	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	12p13.31	NR	rs74754250-?	NR	6E-118		0.1122	[0.1-0.12] unit increase novel	Illumina [6108953] (imputed)	N
642	chr12	7591714	7591715	rs58992912	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	CD163L1	rs58992912-G	0.043	4E-12	(Ribose-5-phosphate isomerase, RPIA.12333.87.3)	0.41	[0.29-0.53] unit increase	Affymetrix [10572788] (imputed)	N
642	chr12	7595835	7595836	rs7305170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPIA	5,362 Icelandic ancestry individuals	NA	12p13.31		rs7305170-T	0.05286	1E-22		0.415609	[0.33-0.5] unit increase	Illumina [7506463] (imputed)	N
642	chr12	7595835	7595836	rs7305170	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN1;CAPNS1	5,358 Icelandic ancestry individuals	NA	12p13.31		rs7305170-T	0.05286	2E-11		0.271468	[0.19-0.35] unit increase	Illumina [7506463] (imputed)	N
643	chr12	7609136	7609137	rs34101580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.31		rs34101580-T	NR	2E-11		0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
643	chr12	7625013	7625014	rs117692263	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p13.31	NR	rs117692263-T	0.917178	2E-8		0.0194479	[0.013-0.026] unit increase	Affymetrix [15000001]	N
643	chr12	7625013	7625014	rs117692263	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	12p13.31	NR	rs117692263-?	NR	1E-101		0.1225	[0.11-0.13] unit increase novel	Illumina [6108953] (imputed)	N
643	chr12	7625013	7625014	rs117692263	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	12p13.31		rs117692263-C	0.0931	6E-28		0.09	unit increase	Illumina [28300000] (imputed)	N
643	chr12	7625013	7625014	rs117692263	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	12p13.31		rs117692263-C	0.0931	1E-17		0.083	unit increase	Illumina [28300000] (imputed)	N
643	chr12	7631882	7631883	rs6488336	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs6488336-?	NR	2E-55				Affymetrix [NR]	N
643	chr12	7637768	7637769	rs61729512	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p13.31	NR	rs61729512-A	0.11886799999999997	3E-11		0.00832238	[0.0058-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
643	chr12	7637768	7637769	rs61729512	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p13.31	NR	rs61729512-A	0.11886799999999997	2E-6		0.00647481	[0.0036-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
643	chr12	7645261	7645262	rs6488345	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	12p13.31	NR	rs6488345-?	NR	7E-104		0.09186	[0.084-0.1] unit increase novel	Illumina [6108953] (imputed)	N
643	chr12	7649483	7649484	rs4883263	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	12p13.31		rs4883263-T	0.0373	2E-19		0.114	unit increase	Illumina [28300000] (imputed)	N
643	chr12	7651137	7651138	rs10743940	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12p13.31	CD163	rs10743940-A	0.3	7E-9	(Asian initial, BMI unadjusted)	0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
643	chr12	7651137	7651138	rs10743940	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	12p13.31	CD163	rs10743940-A	0.29	5E-6	(BMI unadjusted)	0.045	[0.025-0.065] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
643	chr12	7665145	7665146	rs6488394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNRD1	5,366 Icelandic ancestry individuals	NA	12p13.31		rs6488394-T	0.09238	6E-23		0.324843	[0.26-0.39] unit increase	Illumina [7506463] (imputed)	N
643	chr12	7666379	7666380	rs10772448	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	12p13.31	NR	rs10772448-?	NR	4E-99		0.1091	[0.099-0.119] unit increase novel	Illumina [6108953] (imputed)	N
643	chr12	7666990	7666991	rs6416271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MDH1	5,355 Icelandic ancestry individuals	NA	12p13.31		rs6416271-G	0.09282	8E-13		0.229016	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
643	chr12	7681180	7681181	rs7305678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	12p13.31		rs7305678-G	0.521283	2E-8		0.027136	[0.018-0.037] unit decrease	Illumina [13465896] (imputed)	N
643	chr12	7681180	7681181	rs7305678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12p13.31		rs7305678-G	NR	1E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
643	chr12	7681180	7681181	rs7305678	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12p13.31	NR	rs7305678-G	NR	4E-11		0.0242	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr12	7681180	7681181	rs7305678	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	12p13.31		rs7305678-T	0.1616	2E-18		0.057	unit increase	Illumina [28300000] (imputed)	N
643	chr12	7681180	7681181	rs7305678	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	12p13.31		rs7305678-T	0.1616	3E-21		0.072	unit increase	Illumina [28300000] (imputed)	N
643	chr12	7683667	7683668	rs7487435	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	12p13.31	NR	rs7487435-?	NR	9E-158		0.1233	[0.11-0.13] unit decrease novel	Illumina [6108953] (imputed)	N
643	chr12	7691133	7691134	rs7136716	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	12p13.31	intergenic	rs7136716-G	0.39	3E-6	(male)	1.13	[0.66-1.6] unit increase	Illumina [6380737] (imputed)	N
643	chr12	7691133	7691134	rs7136716	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	12p13.31	CD163	rs7136716-G	NR	3E-12		0.020150846	[0.015-0.026] unit increase	Illumina [242289]	N
643	chr12	7691133	7691134	rs7136716	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	12p13.31	NR	rs7136716-G	0.12	7E-9		0.026	unit increase	Illumina [242289]	N
643	chr12	7691133	7691134	rs7136716	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	12p13.31	CD163	rs7136716-G	0.39	3E-26	(CK)	0.165	[0.13-0.2] unit increase	Illumina [561583]	N
643	chr12	7698059	7698060	rs10845402	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	12p13.31	CD163, APOBEC1	rs10845402-?	NR	4E-273		0.1524	[0.14-0.16] unit increase novel	Illumina [6108953] (imputed)	N
643	chr12	7719394	7719395	rs61939662	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	12p13.31	NR	rs61939662-T	0.0421	4E-7		1.3789	[0.84-1.91] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
643	chr12	7731568	7731569	rs2110217	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1RL	5,332 Icelandic ancestry individuals	NA	12p13.31		rs2110217-T	0.02219	3E-17		0.453434	[0.35-0.56] unit decrease	Illumina [7506463] (imputed)	N
643	chr12	7733224	7733225	rs7138813	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	12p13.31	NR	rs7138813-?	NR	1E-159		0.1431	[0.13-0.15] unit increase novel	Illumina [6108953] (imputed)	N
644	chr12	7733696	7733697	rs748889443	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	12p13.31	intergenic	rs748889443-G	4.0E-4	3E-6		5.41082	NR	Affymetrix, Illumina [30341632] (imputed)	N
644	chr12	7744950	7744951	rs917863	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	12p13.31	NR	rs917863-?	NR	2E-44		0.06381	[0.055-0.073] unit increase novel	Illumina [6108953] (imputed)	N
644	chr12	7758656	7758657	rs745876922	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12p13.31	RP11-444J21.2	rs745876922-A	0.0017	7E-6		0.5141	[0.29-0.74] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
644	chr12	7758656	7758657	rs745876922	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12p13.31	RP11-444J21.2	rs745876922-A	0.0017	8E-6		0.5097	[0.29-0.73] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
644	chr12	7769946	7769947	rs11054861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p13.31	NR	rs11054861-A	0.973429	3E-10		0.0229819	[0.015-0.03] unit increase	Affymetrix [16585854] (imputed)	N
644	chr12	7769946	7769947	rs11054861	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p13.31	NR	rs11054861-A	0.973429	2E-7		0.0219748	[0.013-0.031] unit increase	Affymetrix [16585866] (imputed)	N
644	chr12	7774891	7774892	rs1419980	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12p13.31	CD163, APOBEC1	rs1419980-A	0.07	1E-8	(Trans-ethnic initial)	0.03	[0.01-0.05] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
644	chr12	7783173	7783174	rs189623294	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12p13.31	APOBEC1	rs189623294-T	0.0021	2E-6		1.8078	[1.06-2.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
644	chr12	7855270	7855271	rs12307997	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	12p13.31	GDF3	rs12307997-G	0.22	6E-7	(AA-triglyceride response)	22.11	[13.41-30.81] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
645	chr12	7864475	7864476	rs73267033	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	12p13.31	DPPA3	rs73267033-A	0.96	2E-6		1.45	[1.25-1.69]	Affymetrix, Illumina [7567914] (imputed)	N
645	chr12	7866608	7866609	rs113507694	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	12p13.31	DPPA3	rs113507694-G	0.0346	2E-7		2.8376844	[2.44-3.23]	Illumina [10736316] (imputed)	N
645	chr12	7904110	7904111	rs11055602	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	CLEC4C	rs11055602-T	0.566875	1E-418	(CLEC4C, 9094_5_3)	0.9500641	[0.91-0.99] unit decrease	Illumina [> 1000000] (imputed)	N
645	chr12	7976925	7976926	rs78356676	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12p13.31	NR	rs78356676-C	NR	8E-7	(GEE model)	0.98241	[0.59-1.37] unit increase	NR [NR] (imputed)	N
645	chr12	7980393	7980394	rs118107419	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	12p13.31	SLC2A14	rs118107419-C	0.61	1E-14		4.0	[2.86-5.88]	Affymetrix [508192]	N
646	chr12	8047593	8047594	rs12423358	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p13.31	NANOGP1	rs12423358-?		4E-6				Illumina [4322238] (imputed)	N
646	chr12	8075116	8075117	rs7138264	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	12p13.31	SLC2A3	rs7138264-A	0.13	6E-6		0.26	unit increase	Illumina [5600000] (imputed)	N
646	chr12	8075684	8075685	rs741361	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12p13.31	SLC2A3	rs741361-A	0.6	9E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
647	chr12	8141434	8141435	rs10846285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs10846285-T	0.648854	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
647	chr12	8142199	8142199	rs56990409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p13.31	intergenic	rs56990409-GA	0.5573	4E-23		0.03628904	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
647	chr12	8152163	8152164	rs12819689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.31	RP11-69M1.1	rs12819689-T	0.421962	1E-13		0.016764551	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr12	8152163	8152164	rs12819689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p13.31	RP11-69M1.1	rs12819689-T	0.421964	6E-69		0.039042726	[0.035-0.043] unit increase	Affymetrix [93095623] (imputed)	N
647	chr12	8152651	8152652	rs12820720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.31	NR	rs12820720-T	0.419529	3E-14		0.014081	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
647	chr12	8158328	8158329	rs12813035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs12813035-C	0.590446	4E-80				Affymetrix, Illumina [17210439] (imputed)	N
647	chr12	8158328	8158329	rs12813035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p13.31	NR	rs12813035-C	0.578437	4E-82		0.036624	[0.033-0.04] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
647	chr12	8160964	8160965	rs200253706	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	RP11-69M1.3	rs200253706-T	0.365	1E-16	(Arylsulfatase K, ARSK.8269.327.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
647	chr12	8190205	8190206	rs3782679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.31	FOXJ2	rs3782679-A	0.394597	7E-17		0.019169189	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
647	chr12	8195576	8195577	rs55680021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.31	FOXJ2	rs55680021-T	0.389393	1E-12		0.016245129	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
647	chr12	8206166	8206167	rs10846411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12p13.31	NR	rs10846411-G	0.687379	1E-15		0.016659	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
647	chr12	8208243	8208244	rs11057065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12p13.31		rs11057065-T	NR	5E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
647	chr12	8208243	8208244	rs11057065	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12p13.31	FOXJ2, C3AR1	rs11057065-T	0.687	4E-9		0.02294077	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
647	chr12	8208925	8208926	rs4883480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.31	C3AR1, FOXJ2	rs4883480-A	0.687096	2E-11		0.016138908	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
647	chr12	8208942	8208943	rs112172396	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	12p13.31	NR	rs112172396-?	NR	9E-10		6.131	NR z score increase	Illumina [at least 830937] (imputed)	N
647	chr12	8210636	8210637	rs2072449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12p13.31	C3AR1, FOXJ2	rs2072449-G	0.688659	7E-11		0.015656985	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
647	chr12	8210636	8210637	rs2072449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.31	C3AR1, FOXJ2	rs2072449-G	0.688645	1E-12		0.017163372	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr12	8210696	8210697	rs2072448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs2072448-G	0.63433	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
647	chr12	8214855	8214856	rs2110070	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12p13.31	C3AR1	rs2110070-A	0.6873	4E-9		0.02286892	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
647	chr12	8237586	8237587	rs10492105	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	12p13.31		rs10492105-?	NR	5E-6		0.13	[0.073-0.187] unit increase	Affymetrix, Illumina [NR] (imputed)	N
648	chr12	8291121	8291122	rs1133104	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	12p13.31	NR	rs1133104-?	NR	2E-8		0.14125668	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
649	chr12	8397528	8397529	rs9669179	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	12p13.31	FAM90A1	rs9669179-G	NR	3E-8	(GO:0009231|BP|04|riboflavin biosynthetic process)	5.5538855	NR Z-score decrease	Illumina [8100000] (imputed)	N
649	chr12	8489581	8489582	rs2953235	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	12p13.31	intergenic	rs2953235-G	0.586	6E-16		0.19	[0.15-0.24] unit decrease	Affymetrix [339439]	N
650	chr12	8601280	8601281	rs61920546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC6A	5,362 Icelandic ancestry individuals	NA	12p13.31		rs61920546-C	0.181	5E-12		0.166357	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
650	chr12	8602019	8602020	rs11829089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	CLEC6A	rs11829089-T	0.8171875	6E-8	(CLEC6A, 6911_103_3)	0.17118436	[0.11-0.23] unit increase	Illumina [> 1000000] (imputed)	N
651	chr12	8666800	8666801	rs4534636	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	12p13.31	intergenic	rs4534636-A	0.20	2E-6		1.96	[1.49-2.59]	NR [~ 38000000] (imputed)	N
651	chr12	8701164	8701165	rs12321966	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	12p13.31	CLEC4E, AICDA	rs12321966-?	0.92	1E-6	(Turkish)	2.7027025	[1.75-4]	Illumina [up to 547389]	N
651	chr12	8705468	8705469	rs10770857	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	12p13.31	Intergenic	rs10770857-A	0.37	5E-6		0.17	[0.10-0.25] unit increase	NR [~ 38000000] (imputed)	N
651	chr12	8758542	8758543	rs3794318	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12p13.31	Intergenic	rs3794318-A	NR	5E-7	(between families)	5.043	unit decrease	Affymetrix [up to 15107142] (imputed)	N
652	chr12	8823908	8823909	rs567328224	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	12p13.31	NR	rs567328224-?	NR	8E-6		0.537551	[0.3-0.77] unit increase	NR [13958389] (imputed)	N
652	chr12	8832202	8832203	rs7132012	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p13.31	RP11-20D14.4	rs7132012-A	0.6766	3E-20		0.148	[0.12-0.18] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
652	chr12	8836930	8836931	rs11046766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12p13.31	RIMKLB	rs11046766-G	0.31604	1E-12		0.017126452	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr12	8839376	8839377	rs73053851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p13.31	NR	rs73053851-C	0.732351	1E-12		0.015242	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
652	chr12	8840918	8840919	rs10842108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs10842108-G	0.27477	7E-15				Affymetrix, Illumina [24588908] (imputed)	N
652	chr12	8840918	8840919	rs10842108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.31	NR	rs10842108-G	0.223102	1E-11		0.015163	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
652	chr12	8841412	8841413	rs10743452	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	12p13.31		rs10743452-A	0.177330174	5E-8				Illumina [7417619] (imputed)	N
652	chr12	8846153	8846154	rs12297409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs12297409-A	0.737681	6E-11				Affymetrix, Illumina [17210439] (imputed)	N
652	chr12	8851117	8851118	rs78241246	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12p13.31	RIMKLB	rs78241246-T	0.2778	4E-15		0.03149286	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
652	chr12	8851147	8851148	rs112056543	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12p13.31	RIMKLB	rs112056543-A	0.2786	5E-15		0.03143039	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr12	8932200	8932201	rs2377585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12p13.31		rs2377585-G	NR	4E-10		0.0562	[0.039-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
653	chr12	8932200	8932201	rs2377585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12p13.31	RIMKLB	rs2377585-G	0.276236	3E-21		0.023679987	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr12	8932200	8932201	rs2377585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12p13.31	RIMKLB	rs2377585-G	0.276207	2E-22		0.024292553	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr12	8932200	8932201	rs2377585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p13.31	RIMKLB	rs2377585-G	0.276204	1E-22		0.024386186	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr12	8932200	8932201	rs2377585	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12p13.31	A2ML1-AS1	rs2377585-G	0.274675	4E-10		0.056192674	[0.039-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
653	chr12	8932200	8932201	rs2377585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12p13.31	RIMKLB	rs2377585-G	0.2771	2E-15		0.03197319	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr12	8932488	8932492	rs3078352	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12p13.31	RIMKLB	rs3078352-T	0.2498	3E-15		0.03313652	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
653	chr12	8958493	8958494	rs148640443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12p13.31	A2ML1-AS1	rs148640443-T	0.130183	2E-21		0.032778066	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr12	8958493	8958494	rs148640443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.31	A2ML1-AS1	rs148640443-T	0.130144	9E-11		0.022310713	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
653	chr12	8975900	8975901	rs17792974	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.31	FAM80B	rs17792974-?	NR	9E-6	(hippuric acid)	0.5604696	[0.31-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
653	chr12	8989915	8989916	rs11047510	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	12p13.31	NR	rs11047510-?	NR	3E-6		5.089	[3.04-7.14] unit decrease	Illumina [498648]	N
653	chr12	9023092	9023093	rs61919509	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		A2ML1	rs61919509-?	NR	2E-8		1.17198	[NR] unit decrease	Affymetrix [NR] (imputed)	N
654	chr12	9051836	9051837	rs10743549	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.31	A2ML1	rs10743549-?	NR	8E-6	(asparagine)	0.20239519	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
654	chr12	9058561	9058562	rs1073160	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	12p13.31	A2ML1, PHC1	rs1073160-A	0.490180585	3E-6		1.149611	[1.084500629-1.218630424]	Illumina [10439017] (imputed)	N
654	chr12	9062047	9062048	rs188330762	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p13.31	PHC1	rs188330762-A	NR	5E-6		30.839449	[17.46-44.22] unit decrease	Illumina [> 6200000] (imputed)	N
654	chr12	9070365	9070366	rs4883198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12p13.31	PHC1	rs4883198-T	NR	4E-10		0.0217057	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
654	chr12	9070365	9070366	rs4883198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12p13.31	PHC1	rs4883198-T	NR	4E-10		0.0217125	[0.015-0.029] unit increase	Affymetrix [127266] (imputed)	N
654	chr12	9070365	9070366	rs4883198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p13.31	PHC1	rs4883198-A	0.718616	3E-12		0.017218225	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr12	9074258	9074259	rs1805741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.31	PHC1	rs1805741-T	0.71445	8E-10		0.015155751	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr12	9074258	9074259	rs1805741	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12p13.31	NR	rs1805741-C	0.29	1E-17		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
654	chr12	9074258	9074259	rs1805741	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12p13.31	NR	rs1805741-C	0.29	5E-8				Affymetrix [2446094] (imputed)	N
654	chr12	9075013	9075014	rs1805740	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12p13.31	NR	rs1805740-T	0.7185	1E-19		0.0179	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
654	chr12	9075013	9075014	rs1805740	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p13.31	NA	rs1805740-T	0.7185	6E-12		0.0135	[0.0096-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
654	chr12	9076102	9076103	rs4882970	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs4882970-?	NR	7E-26				Affymetrix [NR]	N
654	chr12	9076506	9076507	rs11048036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12p13.31		rs11048036-G	NR	9E-10		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
654	chr12	9076739	9076740	rs10771216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12p13.31	NR	rs10771216-G	0.718589	1E-16		0.017676	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
654	chr12	9076739	9076740	rs10771216	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p13.31	NR	rs10771216-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
654	chr12	9077329	9077330	rs1805738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p13.31	NR	rs1805738-G	NR	4E-17		0.024	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
654	chr12	9077329	9077330	rs1805738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12p13.31	NR	rs1805738-G	NR	2E-12		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
654	chr12	9082390	9082391	rs117302528	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p13.31	PHC1	rs117302528-T	NR	5E-8		0.20270261	[0.13-0.28] unit decrease	Illumina [> 6200000] (imputed)	N
654	chr12	9082580	9082581	rs4883201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPT1	5,360 Icelandic ancestry individuals	NA	12p13.31		rs4883201-G	0.1227	8E-16		0.226666	[0.17-0.28] unit increase	Illumina [7506463] (imputed)	N
654	chr12	9082580	9082581	rs4883201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPSE	5,365 Icelandic ancestry individuals	NA	12p13.31		rs4883201-G	0.1227	2E-53		0.442142	[0.39-0.5] unit increase	Illumina [7506463] (imputed)	N
654	chr12	9082580	9082581	rs4883201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCH1	5,364 Icelandic ancestry individuals	NA	12p13.31		rs4883201-G	0.1227	2E-14		0.220217	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
654	chr12	9082580	9082581	rs4883201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSS	5,364 Icelandic ancestry individuals	NA	12p13.31		rs4883201-G	0.1227	2E-13		0.211875	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
654	chr12	9082580	9082581	rs4883201	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSA	5,364 Icelandic ancestry individuals	NA	12p13.31		rs4883201-G	0.1227	4E-21		0.26792	[0.21-0.32] unit increase	Illumina [7506463] (imputed)	N
654	chr12	9082580	9082581	rs4883201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.31		rs4883201-G	NR	4E-15		0.0141	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
654	chr12	9082580	9082581	rs4883201	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p13.31		rs4883201-A	0.8958	4E-8		0.20034137	[0.13-0.27] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
654	chr12	9082580	9082581	rs4883201	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p13.31		rs4883201-A	0.8956	5E-9		0.13457409	[0.09-0.179] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
654	chr12	9082580	9082581	rs4883201	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.31	PHC1	rs4883201-?	NR	2E-13		0.024942901	[0.018-0.032] unit decrease	Illumina [27896057] (imputed)	N
654	chr12	9082580	9082581	rs4883201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p13.31	NR	rs4883201-A	NR	5E-6		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
654	chr12	9082580	9082581	rs4883201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p13.31	NR	rs4883201-A	NR	8E-7		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
654	chr12	9082580	9082581	rs4883201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p13.31	NR	rs4883201-A	0.899	4E-6	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
654	chr12	9082580	9082581	rs4883201	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	12p13.31	PHC1, A2ML1	rs4883201-A	0.886	5E-11	(Trans-ethnic initial)	0.035	[0.024-0.046] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
654	chr12	9082580	9082581	rs4883201	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12p13.31	A2ML1, PHC1	rs4883201-G	0.12	2E-9		0.035	[NR] unit decrease	NR [NR] (imputed)	N
654	chr12	9090667	9090668	rs3026261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12p13.31		rs3026261-T	NR	3E-13		0.0197	[0.014-0.025] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
654	chr12	9095225	9095226	rs1805731	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	12p13.31	M6PR	rs1805731-C	0.389	4E-8		1.073		Illumina [715631] (imputed)	N
654	chr12	9095225	9095226	rs1805731	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	12p13.31	M6PR	rs1805731-C	0.389	4E-8		1.073		Illumina [715631] (imputed)	N
654	chr12	9095748	9095749	rs7309922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.31		rs7309922-C	NR	2E-9		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
654	chr12	9098995	9098995	rs149871778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p13.31		rs149871778-GAAC	NR	7E-11		0.0192	[0.014-0.025] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
654	chr12	9098995	9098995	rs149871778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.31		rs149871778-GAAC	0.244206	1E-9		0.0143929	[0.0098-0.019] unit decrease	Illumina [13479295] (imputed)	N
654	chr12	9098995	9098995	rs149871778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12p13.31		rs149871778-GAAC	NR	3E-17		0.0263	[0.02-0.032] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
654	chr12	9098995	9098995	rs149871778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p13.31	NR	rs149871778-GAAC	NR	5E-17		0.0329	[0.025-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr12	9098995	9098995	rs149871778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12p13.31	NR	rs149871778-GAAC	NR	2E-9		0.0235	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr12	9098995	9098995	rs149871778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12p13.31	NR	rs149871778-GAAC	NR	2E-13		0.0303	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr12	9098995	9098995	rs149871778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12p13.31	NR	rs149871778-GAAC	NR	2E-12		0.029	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
654	chr12	9101136	9101137	rs1805248	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p13.31	NR	rs1805248-A	NR	4E-9		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
654	chr12	9101136	9101137	rs1805248	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p13.31	NR	rs1805248-A	0.195	2E-7	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
654	chr12	9123931	9123932	rs7301381	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	12p13.31	KLRG1	rs7301381-C	0.463691	5E-11		0.09358772	[0.066-0.122] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-9		0.0282101	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-9		0.0282101	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.030067	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.030067	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0301249	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0301249	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0283487	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0283487	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-10		0.03037	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-10		0.03037	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.029168	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.029168	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0302905	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0302905	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	7E-10		0.0296782	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	7E-10		0.0296782	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774554	4E-8		0.0254615	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774554	4E-8		0.0254615	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0291753	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0291753	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0300325	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0300325	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	2E-9		0.0297598	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	2E-9		0.0297598	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-9		0.0286157	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-9		0.0286157	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0303285	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0303285	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-8		0.0276883	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-8		0.0276883	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-8		0.0285505	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-8		0.0285505	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	6E-9		0.0284043	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	6E-9		0.0284043	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	6E-9		0.0286811	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	6E-9		0.0286811	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-8		0.0267455	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-8		0.0267455	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-9		0.0293269	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	3E-9		0.0293269	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	2E-9		0.0298544	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	2E-9		0.0298544	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-8		0.028189	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-8		0.028189	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-10		0.030306	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-10		0.030306	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-10		0.030517	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-10		0.030517	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-9		0.0277861	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	8E-9		0.0277861	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0292857	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	4E-9		0.0292857	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0300195	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	1E-9		0.0300195	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	9E-9		0.0276621	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9123984	9123984	rs769211849	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	12p13.31		rs769211849-CTTAT,rs769211849-CTTAT	0.774538	9E-9		0.0276621	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
654	chr12	9129090	9129091	rs35870866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12p13.31		rs35870866-A	NR	1E-13		0.0122	[0.0091-0.0153] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
654	chr12	9130286	9130287	rs12827988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs12827988-G	0.45164	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
654	chr12	9133255	9133256	rs80017394	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs80017394-A	0.775028	4E-8		0.0263687	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr12	9133255	9133256	rs80017394	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs80017394-A	0.775028	4E-8		0.026419	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
654	chr12	9153931	9153932	rs11048434	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	460 Asian ancestry cases, 1125 Asian ancestry controls	NA	12p13.31	KLRG1, M6PR	rs11048434-?		6E-7		1.5873016	[1.33-1.89]	Illumina [302688]	N
654	chr12	9168043	9168044	rs182477129	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p13.31		rs182477129-C	0.0052655	5E-6		0.2119	[0.12-0.3] unit increase	Affymetrix [15580782] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	2E-9		0.0253629	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	5E-9		0.0246984	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	5E-9		0.0246099	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	8E-10		0.0258946	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	1E-9		0.0257038	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	3E-9		0.0250762	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
654	chr12	9172645	9172646	rs10842724	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12p13.31		rs10842724-T	0.587097	2E-9		0.0253495	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	4E-9		0.0248896	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	4E-9		0.0248896	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	4E-8		0.0229018	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	4E-8		0.0229018	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.025421	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.025421	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	9E-9		0.0240976	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	9E-9		0.0240976	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0252191	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0252191	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	1E-8		0.0241197	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	1E-8		0.0241197	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253124	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253124	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-8		0.0231816	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-8		0.0231816	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0255009	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0255009	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253592	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253592	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	6E-9		0.0243256	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	6E-9		0.0243256	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253623	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253623	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	8E-9		0.024205	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	8E-9		0.024205	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253984	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	2E-9		0.0253984	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	8E-9		0.0243106	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	8E-9		0.0243106	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	1E-9		0.0256534	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	1E-9		0.0256534	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	5E-9		0.0247422	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	5E-9		0.0247422	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-9		0.0249861	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-9		0.0249861	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-9		0.0251757	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9187652	9187652	rs770530123	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	12p13.31		rs770530123-TATATA,rs770530123-TATATA	0.589197	3E-9		0.0251757	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
655	chr12	9202752	9202753	rs881376	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12p13.31	PZP	rs881376-?	NR	5E-12		0.0184	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
655	chr12	9205802	9205803	rs201319146	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p13.31	NR	rs201319146-CG	0.643581	2E-20		0.0186527	[0.015-0.023] unit decrease	Affymetrix [15000001]	N
655	chr12	9239233	9239234	rs226415	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p13.31	NR	rs226415-T	0.4935	4E-8				NR [9056863] (imputed)	N
655	chr12	9255459	9255460	rs7980288	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs7980288-?	NR	1E-7				Affymetrix [NR]	N
655	chr12	9275777	9275778	rs10842914	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p13.31	NR	rs10842914-C		4E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
655	chr12	9288952	9288953	rs2160424	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT16L1	5,364 Icelandic ancestry individuals	NA	12p13.31		rs2160424-A	0.449	3E-51		0.271662	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
655	chr12	9298537	9298538	rs12302819	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PZP	5,365 Icelandic ancestry individuals	NA	12p13.31		rs12302819-G	0.4486	3E-53		0.230299	[0.2-0.26] unit increase	Illumina [7506463] (imputed)	N
655	chr12	9299434	9299435	rs79754688	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12p13.31		rs79754688-?	NR	5E-6		0.58	[0.33-0.83] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
655	chr12	9303295	9303296	rs10842971	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.31	A2ML1, KLRG1, A2M, PZP, DDX12P	rs10842971-?		1E-40				Affymetrix, Illumina [NR] (imputed)	N
656	chr12	9313303	9313304	rs7968679	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12p13.31	PZP	rs7968679-A	0.7004	4E-12		6.95	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
656	chr12	9313303	9313304	rs7968679	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	12p13.31	NR	rs7968679-A	0.6975	2E-11		0.0513	[0.036-0.066] unit increase	Illumina [~ 10600000] (imputed)	N
656	chr12	9313303	9313304	rs7968679	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	12p13.31	PZP	rs7968679-?	NR	4E-12		1.057	[1.040-1.073]	Illumina [13762925] (imputed)	N
656	chr12	9314856	9314857	rs7311982	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs7311982-C	0.6978125	3E-135	(PZP, 6580_29_3)	0.5000429	[0.46-0.54] unit increase	Illumina [> 1000000] (imputed)	N
656	chr12	9314856	9314857	rs7311982	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	NR	rs7311982-C	0.6978125	1E-62	(NUDT16L1, 12497_29_3)	0.41947252	[0.37-0.47] unit increase	Illumina [> 1000000] (imputed)	N
656	chr12	9317783	9317784	rs2277413	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PZP	5,365 Icelandic ancestry individuals	NA	12p13.31		rs2277413-G	0.2992	7E-239		0.499704	[0.47-0.53] unit decrease	Illumina [7506463] (imputed)	N
656	chr12	9317783	9317784	rs2277413	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT16L1	5,364 Icelandic ancestry individuals	NA	12p13.31		rs2277413-G	0.2992	4E-107		0.420856	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
656	chr12	9317783	9317784	rs2277413	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	PZP	rs2277413-G	0.291	3E-37	(Protein syndesmos, NUDT16L1.12497.29.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
656	chr12	9334570	9334571	rs3741849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PZP	5,365 Icelandic ancestry individuals	NA	12p13.31		rs3741849-T	0.122	3E-134		0.550491	[0.51-0.59] unit decrease	Illumina [7506463] (imputed)	N
656	chr12	9336004	9336004	rs35749332	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p13.31	NR	rs35749332-?	NR	4E-8	(left basal forebrain)			NR [9227495] (imputed)	N
656	chr12	9352907	9352908	rs6487668	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	12p13.31	PZP	rs6487668-C	0.2181	7E-7	(EA)			Illumina [NR] (imputed)	N
656	chr12	9371331	9371332	rs6487679	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (AST)	236 European ancestry cases	NA	12p13.31	PZP	rs6487679-G	0.16	1E-6		0.4	[NR] unit increase	Illumina [324623]	N
656	chr12	9374372	9374373	rs972111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PZP	5,365 Icelandic ancestry individuals	NA	12p13.31		rs972111-A	0.2956	3E-140		0.399332	[0.37-0.43] unit decrease	Illumina [7506463] (imputed)	N
656	chr12	9375088	9375089	rs7305336	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT16L1	5,364 Icelandic ancestry individuals	NA	12p13.31		rs7305336-C	0.2957	3E-63		0.330049	[0.29-0.37] unit decrease	Illumina [7506463] (imputed)	N
656	chr12	9376167	9376168	rs7298108	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	12p13.31	A2MP1	rs7298108-C	0.8217	2E-6	(EA)			Illumina [NR] (imputed)	N
656	chr12	9378228	9378229	rs57961998	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs57961998-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9380117	9380118	rs73057767	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs73057767-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9380136	9380137	rs73057770	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs73057770-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9380858	9380859	rs10771431	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	12p13.31	LOC642846, LOC728715	rs10771431-A	0.444	2E-6		0.073	[0.042-0.104] cup size decrease	Illumina [7422970] (imputed)	N
656	chr12	9381073	9381074	rs67775007	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs67775007-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9383537	9383538	rs73251320	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs73251320-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9383935	9383936	rs67033239	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs67033239-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9384957	9384958	rs16918212	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs16918212-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9388009	9388010	rs17804080	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs17804080-?		5E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9388009	9388010	rs17804080	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12p13.31	NR	rs17804080-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
656	chr12	9407281	9407282	rs12369816	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PZP	5,365 Icelandic ancestry individuals	NA	12p13.31		rs12369816-C	0.3526	8E-16		0.126139	[0.095-0.157] unit increase	Illumina [7506463] (imputed)	N
656	chr12	9435243	9435244	rs1549426	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	12p13.31	NR	rs1549426-T	0.487	2E-8		0.0396	[0.026-0.053] unit decrease	Illumina [~ 10600000] (imputed)	N
657	chr12	9463805	9463806	rs10771515	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.31	PZP	rs10771515-A	0.049	9E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
657	chr12	9496401	9496402	rs10843459	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs10843459-?	NR	2E-37				Affymetrix [NR]	N
657	chr12	9546961	9546962	rs7397814	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.31	NR	rs7397814-C	0.791488588340009	4E-6	(IGP67)	0.188	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
657	chr12	9555842	9555843	rs189518826	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC141557.1	rs189518826-?	NR	9E-9	(male)	2.15554	[NR] unit decrease	Affymetrix [NR] (imputed)	N
657	chr12	9555842	9555843	rs189518826	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC141557.1	rs189518826-?	NR	2E-10		1.61948	[NR] unit decrease	Affymetrix [NR] (imputed)	N
659	chr12	9739448	9739449	rs2109903	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	12p13.31	NR	rs2109903-A	0.329	1E-10		0.02041		Illumina [243345]	N
659	chr12	9745915	9745916	rs151060196	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12p13.31	NR	rs151060196-?	NR	3E-8				Illumina [7760689] (imputed)	N
659	chr12	9747726	9747727	rs112483119	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p13.31	KLRB1	rs112483119-G	0.0113480899999486	8E-6	(F_Sutterellaceae_HB)	1.31474	[0.74-1.89] unit decrease	Illumina [7711310] (imputed)	N
659	chr12	9748571	9748572	rs2241005	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	12p13.31	KLRB1	rs2241005-T	0.5002	7E-6		1.2873327	[1.18-1.40]	Illumina [500508]	N
659	chr12	9752729	9752730	rs10771925	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRB1	5,362 Icelandic ancestry individuals	NA	12p13.31		rs10771925-C	0.3696	8E-27		0.204329	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
659	chr12	9753787	9753788	rs3933456	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	KLRB1	rs3933456-C	0.6246875	2E-16	(KLRB1, 10809_14_3)	0.21338192	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
660	chr12	9833523	9833524	rs3764022	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12p13.31	CLEC2D	rs3764022-C	0.675	2E-24		1.098901	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
660	chr12	9833627	9833628	rs3764021	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12p13.31	NR	rs3764021-C	0.47	5E-8		1.57	[1.38-1.79]	Affymetrix [469557]	N
660	chr12	9835924	9835925	rs76226393	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12p13.31	CLEC2D, CLECL1	rs76226393-T	0.738	9E-15		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
660	chr12	9855957	9855958	rs11052552	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12p13.31	NR	rs11052552-G	0.49	7E-7		1.49	[1.28-1.73]	Affymetrix [469557]	N
660	chr12	9862969	9862970	rs2080208	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12p13.31	CLEC2D	rs2080208-?	NR	5E-12		0.00419	[0.0013-0.0071] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
660	chr12	9862969	9862970	rs2080208	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12p13.31	CLEC2D	rs2080208-?	NR	3E-6	(AA)	0.02079	[0.011-0.031] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
660	chr12	9862969	9862970	rs2080208	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (1df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12p13.31	CLEC2D	rs2080208-?	NR	7E-8		0.02088	[0.013-0.028] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
660	chr12	9866348	9866349	rs7977720	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.31	CLEC2D	rs7977720-T	NR	5E-24		1.0995052	NR	Affymetrix, Illumina [8278136] (imputed)	N
660	chr12	9876090	9876091	rs10466829	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12p13.31	CLECL1	rs10466829-A	NR	1E-8		1.09	[1.08-1.11]	Illumina [465434]	N
660	chr12	9888641	9888642	rs11052754	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12p13.31	CLECL1	rs11052754-T	0.685	4E-22		1.1111112	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
660	chr12	9888761	9888762	rs10844639	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	12p13.31	CLECL1, CD69	rs10844639-?	NR	6E-11		0.0401	[0.028-0.052] unit increase novel	Illumina [6108953] (imputed)	N
660	chr12	9889156	9889157	rs7956831	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	12p13.31	intergenic	rs7956831-?	NR	3E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
660	chr12	9899049	9899050	rs10772108	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12p13.31	intergenic	rs10772108-G	0.341	4E-15		0.02988587	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9899623	9899624	rs10844682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.31		rs10844682-C	0.340921	1E-27		0.025670012	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9899623	9899624	rs10844682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p13.31		rs10844682-C	0.340879	6E-13		0.01694367	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9899623	9899624	rs10844682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12p13.31	intergenic	rs10844682-C	0.3414	3E-12		0.02637725	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9902665	9902666	rs11608493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p13.31		rs11608493-A	0.937	6E-13				Affymetrix [10369434] (imputed)	N
660	chr12	9902665	9902666	rs11608493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12p13.31		rs11608493-A	0.937	8E-12				Affymetrix [10369434] (imputed)	N
660	chr12	9902665	9902666	rs11608493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.31		rs11608493-A	0.937	4E-14				Affymetrix [10369434] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.31		rs11052877-G	NR	1E-28		0.0226	[0.019-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	12p13.31		rs11052877-G	0.350702	9E-17		0.0383937	[0.029-0.047] unit increase	Illumina [13471431] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p13.31		rs11052877-G	NR	3E-149		0.0565	[0.052-0.061] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p13.31		rs11052877-A	0.629	1E-69				Affymetrix [10369434] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.31		rs11052877-A	0.629	1E-84				Affymetrix [10369434] (imputed)	N
660	chr12	9905689	9905690	rs11052877	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	12p13.31		rs11052877-A	0.629	1E-14				Affymetrix [10369434] (imputed)	N
660	chr12	9905689	9905690	rs11052877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.31	CD69	rs11052877-G	0.370996	4E-19		0.021961367	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
660	chr12	9905689	9905690	rs11052877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs11052877-G	0.365734	4E-43				Affymetrix, Illumina [24649327] (imputed)	N
660	chr12	9905689	9905690	rs11052877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p13.31	NR	rs11052877-G	0.371961	4E-39		0.024974	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
660	chr12	9905689	9905690	rs11052877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.31	NR	rs11052877-G	0.366369	1E-290				Affymetrix, Illumina [23472807] (imputed)	N
660	chr12	9905689	9905690	rs11052877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.31	NR	rs11052877-G	0.371691	6E-271		0.068864	[0.065-0.073] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
660	chr12	9905689	9905690	rs11052877	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	12p13.31	CD69	rs11052877-G	0.38	6E-13		1.09		Illumina [161311]	N
660	chr12	9905850	9905851	rs917911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	12p13.31	NR	rs917911-A	0.375239	2E-14		0.037584	[0.028-0.047] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
660	chr12	9905850	9905851	rs917911	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	12p13.31	CD69	rs917911-C	0.36	2E-7		1.1		Illumina [135870]	N
660	chr12	9906323	9906324	rs111791571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p13.31		rs111791571-A	0.942	2E-14				Affymetrix [10369434] (imputed)	N
660	chr12	9906323	9906324	rs111791571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12p13.31		rs111791571-A	0.942	2E-9				Affymetrix [10369434] (imputed)	N
660	chr12	9906323	9906324	rs111791571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.31		rs111791571-A	0.942	1E-22				Affymetrix [10369434] (imputed)	N
660	chr12	9910131	9910132	rs10844706	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12p13.31		rs10844706-C	0.63	6E-72				Affymetrix [10369434] (imputed)	N
660	chr12	9910131	9910132	rs10844706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.31	CD69	rs10844706-A	0.370155	3E-23		0.025463516	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9910131	9910132	rs10844706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31	CD69	rs10844706-A	0.370165	4E-30		0.03122542	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
660	chr12	9910131	9910132	rs10844706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	CD69	rs10844706-A	0.370167	1E-55		0.04287912	[0.038-0.048] unit increase	Affymetrix [93095623] (imputed)	N
660	chr12	9910131	9910132	rs10844706	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12p13.31	CD69	rs10844706-A	0.3716	3E-42		0.05034978	[0.043-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9910131	9910132	rs10844706	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.31	CD69	rs10844706-A	0.3716	2E-75		0.06860414	[0.061-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9910163	9910164	rs4763879	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	12p13.31	CD69	rs4763879-A	0.37	2E-11		1.09	[1.02-1.16]	Affymetrix, Illumina [841622] (imputed)	N
660	chr12	9911086	9911087	rs3176792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31	CD69	rs3176792-T	0.086102	3E-13		0.031349678	[0.023-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9911086	9911087	rs3176792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	CD69	rs3176792-T	0.086078	8E-17		0.03562921	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9912729	9912730	rs3176789	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12p13.31	CD69	rs3176789-T	0.2789	5E-27		0.04292514	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9912729	9912730	rs3176789	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12p13.31	CD69	rs3176789-T	0.2789	9E-50		0.05908269	[0.051-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9914864	9914865	rs3176779	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	12p13.31		rs3176779-G	0.095162	1E-6		1.257071	NR	Affymetrix [7846216] (imputed)	N
660	chr12	9916639	9916640	rs3136559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.31	CD69	rs3136559-T	0.271262	1E-82		0.05612299	[0.05-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9924451	9924452	rs370475698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12p13.31		rs370475698-T	NR	3E-21		0.1052	[0.083-0.127] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
660	chr12	9926874	9926875	rs10844750	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	12p13.31		rs10844750-C	0.728	9E-75				Affymetrix [10369434] (imputed)	N
660	chr12	9926874	9926875	rs10844750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.31		rs10844750-T	0.271127	3E-27		0.03002406	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
660	chr12	9926874	9926875	rs10844750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.31		rs10844750-T	0.271088	9E-57		0.046350803	[0.041-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr12	9929678	9929679	rs1861090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.31	intergenic	rs1861090-G	0.2966	9E-62		0.06564222	[0.058-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
660	chr12	9931346	9931347	rs2110451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12p13.31		rs2110451-A	NR	3E-8		0.0998	[0.064-0.135] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
660	chr12	9939223	9939224	rs12423545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	12p13.31		rs12423545-T	NR	1E-28		0.103	[0.085-0.121] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
660	chr12	9939223	9939224	rs12423545	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	12p13.31	CD69	rs12423545-T	0.325966	1E-27		0.107592165	[0.088-0.127] unit increase	Affymetrix [7288503] (imputed)	N
661	chr12	9967812	9967813	rs4418897	32355309	Cha PC	2020-05-01	J Hum Genet	Genome-wide association study identifies zonisamide responsive gene in Parkinson's disease patients.	Levodopa wearing off effect (time symptoms uncontrolled) in Parkinson's disease (response to zonisamide)	67 Japanese ancestry responders, 133 Japanese ancestry poor responders	NA	12p13.31	KLRF1	rs4418897-A	0.73	5E-6		6.622517	[NR]	Illumina [611492]	N
661	chr12	10023479	10023480	rs4514513	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.31	NR	rs4514513-?	NR	1E-6				Affymetrix [NR]	N
661	chr12	10029346	10029347	rs6488236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	12p13.31		rs6488236-?	NR	5E-8				Affymetrix [NR] (imputed)	N
661	chr12	10054032	10054033	rs117261728	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC1B	5,357 Icelandic ancestry individuals	NA	12p13.31		rs117261728-G	0.0419	4E-21		0.434716	[0.34-0.53] unit decrease	Illumina [7506463] (imputed)	N
661	chr12	10054032	10054033	rs117261728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.31		rs117261728-G	NR	1E-9		0.0411	[0.028-0.054] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
662	chr12	10097608	10097609	rs28588142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12p13.31	AC091814.2	rs28588142-T	0.189211	3E-9		0.01675032	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
662	chr12	10097608	10097609	rs28588142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.31		rs28588142-?	NR	4E-10				NR [~ 8900000] (imputed)	N
662	chr12	10108498	10108499	rs34022830	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Escherichia abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.31		rs34022830-G	0.014869	2E-8		0.487842	[0.32-0.66] unit increase	Illumina [7980478] (imputed)	N
662	chr12	10109840	10109841	rs4763395	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Small whole fish consumption	82,791 Japanese ancestry men, 69,486 Japanese ancestry women	NA	12p13.31	NR	rs4763395-?	NR	1E-7	(male)			Illumina [6108828] (imputed)	N
662	chr12	10110540	10110541	rs34183666	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	NR	rs34183666-C	0.275	3E-41	(C-type lectin domain family 12 member A, CLEC12A.11187.11.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
662	chr12	10126248	10126249	rs7309256	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12A	5,367 Icelandic ancestry individuals	NA	12p13.31		rs7309256-T	0.2679	2E-149		0.526202	[0.49-0.57] unit decrease	Illumina [7506463] (imputed)	N
662	chr12	10136671	10136672	rs2961544	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.31	CLEC12A	rs2961544-A	0.639	9E-1973	(C-type lectin domain family 12 member A, CLEC12A.11187.11.3)	1.25	[1.23-1.27] unit decrease	Affymetrix [10572788] (imputed)	N
662	chr12	10142896	10142897	rs679982	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC1B	5,357 Icelandic ancestry individuals	NA	12p13.31		rs679982-G	0.4534	1E-28		0.2043	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
662	chr12	10146706	10146707	rs544605	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC1B	5,357 Icelandic ancestry individuals	NA	12p13.31		rs544605-C	0.2192	2E-114		0.479395	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
662	chr12	10146706	10146707	rs544605	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.31	CLEC1B	rs544605-T	0.78109375	5E-70	(CLEC1B, 4332_6_2)	0.5039395	[0.45-0.56] unit decrease	Illumina [> 1000000] (imputed)	N
662	chr12	10160067	10160068	rs7970682	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.2	CLEC12A	rs7970682-C	0.6196875	1E-553	(CLEC12A, 11187_11_3)	1.0560892	[1.02-1.09] unit decrease	Illumina [> 1000000] (imputed)	N
662	chr12	10170160	10170161	rs1054611	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	12p13.2	CLEC12B	rs1054611-?	NR	6E-6	(Hypoesthesia, Recessive)			Illumina [243229]	N
662	chr12	10170726	10170727	rs11053548	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	12p13.2	CLEC12B	rs11053548-A	0.91	5E-6		2.12	[1.22-3.02] mmHg increase	Illumina [1019297] (imputed)	N
663	chr12	10248045	10248046	rs7956208	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	12p13.2		rs7956208-A	0.13	8E-9		0.0803	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
663	chr12	10262274	10262275	rs2087307	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.2	CLEC1A	rs2087307-?	NR	9E-6	(betaine)	0.17197405	[0.096-0.248] unit decrease	Affymetrix [at least 2500000] (imputed)	N
663	chr12	10291445	10291446	rs10845051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.2		rs10845051-A	0.5055	4E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
663	chr12	10291445	10291446	rs10845051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.2	Intergenic	rs10845051-A	0.5055	8E-9	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
663	chr12	10325127	10325128	rs2742112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.2		rs2742112-T	0.3218	2E-8	(conditional-joint)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
663	chr12	10333346	10333347	rs10505752	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	12p13.2		rs10505752-A	0.16	2E-18		0.1048	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
664	chr12	10392483	10392484	rs12303774	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12p13.2	NR	rs12303774-?	NR	2E-6		0.0423	[0.025-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
664	chr12	10399107	10399108	rs7953558	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.2	NR	rs7953558-?	NR	2E-8				Affymetrix [NR]	N
664	chr12	10425209	10425210	rs4764369	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Umami taste perception in obesity with metabolic syndrome	378 individuals	NA	12p13.2	KLRD1	rs4764369-G	0.259	3E-6		0.83	[0.49-1.17] unit decrease	Illumina [622468]	N
664	chr12	10471049	10471050	rs12303914	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	12p13.2	KLRA1	rs12303914-A	0.35	6E-6	(EA-triglyceride response)	20.39	[11.51-29.27] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
665	chr12	10521388	10521389	rs10743889	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p13.2	KLRK1	rs10743889-C	0.4	6E-6	(VO2max )	0.04	[NR] mL/min increase	Illumina [899892]	N
665	chr12	10532325	10532326	rs2255336	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12p13.2	KLRK1, KLRC3, KLRC2, KLRC4-KLRK1, RP11-277P12.20, KLRC1, RP11-277P12.9, KLRC4, RP11-277P12.6	rs2255336-T	0.2178715	1E-13	(EA, NKG2-D type II integral membrane protein)	0.3993	[0.3-0.5] unit increase	Affymetrix [509946]	N
665	chr12	10560956	10560957	rs2617170	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12p13.2	NR	rs2617170-C	NR	1E-15		0.0216	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr12	10560956	10560957	rs2617170	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p13.2	NR	rs2617170-C	NR	4E-16		0.021	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr12	10560956	10560957	rs2617170	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	12p13.2	KLRC4	rs2617170-T	0.63	1E-9		1.28	[1.18-1.39]	Illumina [779465] (imputed)	N
665	chr12	10568524	10568525	rs77926410	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12p13.2	KLRC3, NKG2-E	rs77926410-G	0.1251	5E-9		0.03127829	[0.021-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
665	chr12	10573093	10573094	rs2682491	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	12p13.2	KLRC3	rs2682491-C	0.3132	3E-6		0.06	NR SD units decrease	Illumina [21568490] (imputed)	N
665	chr12	10574000	10574001	rs17513937	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12p13.2	KLRC3, KLRC2	rs17513937-T	0.31	5E-18		8.66	z-score increase	Affymetrix [4314223] (imputed)	N
665	chr12	10579184	10579185	rs2859659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs2859659-T	0.894615	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
665	chr12	10581026	10581027	rs10772279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p13.2		rs10772279-G	NR	3E-15		0.0268	[0.02-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
665	chr12	10581039	10581040	rs10772280	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12p13.2		rs10772280-C	0.125	1E-19				Affymetrix [10369434] (imputed)	N
665	chr12	10581039	10581040	rs10772280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs10772280-A	0.886912	2E-47				Affymetrix, Illumina [23467995] (imputed)	N
665	chr12	10581039	10581040	rs10772280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.2		rs10772280-?	NR	6E-16				NR [~ 8900000] (imputed)	N
665	chr12	10581039	10581040	rs10772280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.2		rs10772280-?	NR	7E-19				NR [~ 8900000] (imputed)	N
665	chr12	10581594	10581595	rs2734424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12p13.2	NKG2-E, KLRC2	rs2734424-C	0.8735	3E-11		0.03579734	[0.025-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
665	chr12	10581606	10581607	rs2734423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12p13.2		rs2734423-A	NR	2E-19		0.0184	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
665	chr12	10581649	10581650	rs2859661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.2	KLRC2, NKG2-E	rs2859661-C	0.871668	9E-42		0.045090176	[0.039-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10582293	10582294	rs2859660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12p13.2		rs2859660-T	NR	2E-14		0.0247	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
665	chr12	10583296	10583297	rs2981595	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12p13.2	KLRC2	rs2981595-G	0.16066	1E-19		0.00493495	[0.0038-0.006] unit increase	Affymetrix [13995440] (imputed)	N
665	chr12	10583296	10583297	rs2981595	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p13.2		rs2981595-A	0.80156	1E-8		0.1686	[0.11-0.23] unit decrease	Illumina [18349913] (imputed)	N
665	chr12	10583610	10583611	rs3003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.2	KLRC2	rs3003-T	0.835491	1E-19		0.028630452	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
665	chr12	10584191	10584192	rs76478238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p13.2		rs76478238-C	NR	3E-32		0.0404	[0.034-0.047] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
665	chr12	10584253	10584254	rs78326895	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12p13.2	KLRC2	rs78326895-C	0.14	2E-12		7.02	z-score increase	Affymetrix [4312306] (imputed)	N
665	chr12	10584253	10584254	rs78326895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.2	KLRC2, NKG2-E	rs78326895-C	0.143863	1E-43		0.04523165	[0.039-0.052] unit increase	Affymetrix [93095623] (imputed)	N
665	chr12	10585039	10585040	rs2741884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.2	KLRC2, NKG2-E	rs2741884-A	0.845373	3E-17		0.027499037	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10585252	10585253	rs112413037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.2	KLRC2, NKG2-E	rs112413037-T	0.144157	9E-18		0.02788334	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10585252	10585253	rs112413037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.2	KLRC2, NKG2-E	rs112413037-T	0.14415	2E-9		0.019593023	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
665	chr12	10585445	10585446	rs2947114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p13.2		rs2947114-A	NR	4E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
665	chr12	10587110	10587111	rs1141715	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	12p13.2	KLRC2	rs1141715-A	0.1273	9E-9		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
665	chr12	10592966	10592966	rs35646030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12p13.2		rs35646030-TC	NR	2E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
665	chr12	10592968	10592969	rs35318627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs35318627-C	0.834173	2E-21				Affymetrix, Illumina [24332387] (imputed)	N
665	chr12	10593835	10593836	rs35649801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.2	NR	rs35649801-A	0.138735	4E-32		0.033168	[0.028-0.039] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
665	chr12	10593835	10593836	rs35649801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.2	NR	rs35649801-A	0.139298	3E-22		0.028845	[0.023-0.035] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
665	chr12	10596116	10596117	rs11053801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.2	KLRC1	rs11053801-G	0.851722	4E-19		0.029102098	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10596719	10596720	rs7957375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p13.2		rs7957375-C	NR	8E-19		0.0296	[0.023-0.036] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
665	chr12	10596719	10596720	rs7957375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.2	KLRC1	rs7957375-C	0.852059	4E-29		0.036838703	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10596719	10596720	rs7957375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.2	KLRC1	rs7957375-C	0.852061	3E-18		0.028850695	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10596719	10596720	rs7957375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.2	KLRC1	rs7957375-C	0.852012	1E-27		0.0353873	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10597206	10597207	rs11053802	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	12p13.2	KLRC1	rs11053802-?	NR	5E-20		0.0022	[0.0016-0.0028] unit increase	Affymetrix [21347608] (imputed)	N
665	chr12	10597206	10597207	rs11053802	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	12p13.2	KLRC1	rs11053802-?	NR	2E-11		0.0027	[0.0017-0.0037] unit increase	Affymetrix [21347608] (imputed)	N
665	chr12	10597206	10597207	rs11053802	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	12p13.2	KLRK1, KLRC4	rs11053802-T	0.67	4E-9		1.11		Illumina, Perlegen [9113515] (imputed)	N
665	chr12	10598537	10598538	rs2734419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p13.2	KLRC1	rs2734419-C	0.691865	1E-9		0.014631798	[0.0099-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
665	chr12	10599346	10599347	rs2682471	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	12p13.2	NR	rs2682471-G	NR	6E-6		0.1143	[0.065-0.164] SD units increase	NR [10700000] (imputed)	N
665	chr12	10600367	10600368	rs2734442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p13.2	NR	rs2734442-A	0.875502	3E-49		0.041999	[0.036-0.048] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
665	chr12	10600367	10600368	rs2734442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12p13.2	KLRC1	rs2734442-A	0.8746	1E-16		0.04474119	[0.034-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
665	chr12	10600367	10600368	rs2734442	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12p13.2	KLRC1	rs2734442-A	0.8745	1E-18		0.04766279	[0.037-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
665	chr12	10602624	10602630	rs3216778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12p13.2	KLRC1	rs3216778-T	0.344326	7E-10		0.014540714	[0.0099-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr12	10610990	10610991	rs7298732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12p13.2	KLRC1	rs7298732-C	0.1246	5E-14		0.04097578	[0.03-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr12	10638992	10638993	rs10772289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p13.2	NR	rs10772289-C	0.875528	2E-16		0.022828	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
666	chr12	10640983	10640984	rs10734834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.2		rs10734834-T	0.875905	2E-10		0.021625333	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr12	10704349	10704350	rs10772314	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	12p13.2	KLRAP1	rs10772314-A	0.4	3E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
666	chr12	10704349	10704350	rs10772314	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	12p13.2	KLRAP1	rs10772314-A	0.4	5E-8		0.031	[0.02-0.042] unit decrease	Affymetrix [at least 8900000] (imputed)	N
666	chr12	10721455	10721456	rs4763555	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	12p13.2	intergenic	rs4763555-?	NR	9E-6		0.0283	[0.016-0.041] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
666	chr12	10724416	10724417	rs10845170	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12p13.2	Intergenic	rs10845170-T	NR	8E-6		0.0152457	[0.0086-0.0219] unit decrease	Illumina [13520550] (imputed)	N
666	chr12	10736695	10736696	rs575602660	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12p13.2	KLRA1P	rs575602660-A	0.9982	9E-6		0.6012	[0.34-0.87] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
666	chr12	10736695	10736696	rs575602660	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12p13.2	KLRA1P	rs575602660-A	0.9982	9E-6		0.6012	[0.34-0.87] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
667	chr12	10834864	10834865	rs10845202	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p13.2	NR	rs10845202-?	NR	1E-7		0.0091664	[0.0058-0.0126] unit decrease	Affymetrix [805426] (imputed)	N
667	chr12	10859924	10859925	rs12578723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	12p13.2		rs12578723-G	0.305733017	2E-8		0.07355683	[0.048-0.099] unit increase	Illumina [13429980] (imputed)	N
667	chr12	10875927	10875928	rs77100210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12p13.2		rs77100210-?	NR	3E-29				NR [~ 8900000] (imputed)	N
667	chr12	10876572	10876573	rs2607903	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12p13.2	YBX3	rs2607903-?	NR	5E-9		0.0399039	[0.027-0.053] unit decrease	Illumina [4804024] (imputed)	N
667	chr12	10876572	10876573	rs2607903	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12p13.2	YBX3	rs2607903-?	NR	7E-10		0.0624088	[0.043-0.082] unit decrease	Illumina [19707525] (imputed)	N
668	chr12	10879131	10879132	rs7966177	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.2	YBX3	rs7966177-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
668	chr12	10913326	10913327	rs111275535	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	12p13.2	NR	rs111275535-A	0.060316	5E-6		1.133	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
668	chr12	10986567	10986568	rs117306194	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.2	NR	rs117306194-G	0.01916	3E-8	(LUM)	0.2116	NR unit increase	Illumina [1671387] (imputed)	N
669	chr12	11049650	11049651	rs10772383	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFA2	5,368 Icelandic ancestry individuals	NA	12p13.2		rs10772383-A	0.2905	3E-16		0.169618	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
669	chr12	11067523	11067524	rs7398041	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTN3	5,363 Icelandic ancestry individuals	NA	12p13.2		rs7398041-A	0.29	1E-31		0.233935	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
669	chr12	11126576	11126577	rs7294858	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST2	5,366 Icelandic ancestry individuals	NA	12p13.2		rs7294858-A	0.2749	3E-12		0.140802	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
670	chr12	11174275	11174276	rs10772420	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs10772420-?		6E-26	(quinine and denatonium benzoate)			Illumina [4381914] (imputed)	N
670	chr12	11174275	11174276	rs10772420	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs10772420-?		5E-65	(quinine and caffeine)			Illumina [4381914] (imputed)	N
670	chr12	11174275	11174276	rs10772420	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs10772420-?		2E-24	(quinine and sucrose octaacetate)			Illumina [4381914] (imputed)	N
670	chr12	11174275	11174276	rs10772420	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs10772420-?		8E-23	(quinine)	0.337	[0.27-0.4] unit decrease	Illumina [4381914] (imputed)	N
670	chr12	11189965	11189966	rs2597979	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	12p13.2	PRH1-PRR4	rs2597979-G	0.1964	3E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix [~ 7740000] (imputed)	N
670	chr12	11189965	11189966	rs2597979	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs2597979-?		8E-24	(caffeine and quinine)			Illumina [4381914] (imputed)	N
670	chr12	11189965	11189966	rs2597979	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs2597979-?		5E-11	(caffeine and denatonium benzoate)			Illumina [4381914] (imputed)	N
670	chr12	11189965	11189966	rs2597979	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs2597979-?		3E-10	(caffeine and sucrose octaacetate)			Illumina [4381914] (imputed)	N
670	chr12	11189965	11189966	rs2597979	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs2597979-?		4E-8	(caffeine)	0.264	[0.17-0.36] unit increase	Illumina [4381914] (imputed)	N
670	chr12	11194383	11194384	rs67487380	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs67487380-?		5E-8	(sucrose octaacetate and caffeine)			Illumina [4381914] (imputed)	N
670	chr12	11194383	11194384	rs67487380	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs67487380-?		5E-13	(sucrose octaacetate and quinine)			Illumina [4381914] (imputed)	N
670	chr12	11194383	11194384	rs67487380	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception (multivariate analysis)	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs67487380-?		2E-6	(sucrose octaacetate and denatonium benzoate)			Illumina [4381914] (imputed)	N
670	chr12	11194383	11194384	rs67487380	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	12p13.2	NR	rs67487380-?		4E-7	(sucrose octaacetate)	0.202	[0.12-0.28] unit decrease	Illumina [4381914] (imputed)	N
670	chr12	11216314	11216315	rs2708377	23966204	Ledda M	2013-08-20	Hum Mol Genet	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazilian ancestry individuals	104 Brazilian ancestry individuals	12p13.2	Tas2R46	rs2708377-?	0.312	3E-8	(Caffeine)	0.11	[0.071-0.149] unit decrease	Illumina [~ 1000000]	N
670	chr12	11225963	11225964	rs4589382	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12p13.2	NR	rs4589382-C	0.25	1E-6		1.62	[-0.536-3.776]	Affymetrix [at least 143006] (imputed)	N
670	chr12	11255673	11255674	rs36175327	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST5	5,367 Icelandic ancestry individuals	NA	12p13.2		rs36175327-A	0.2757	1E-12		0.145059	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
670	chr12	11255673	11255674	rs36175327	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST1	5,364 Icelandic ancestry individuals	NA	12p13.2		rs36175327-A	0.2757	1E-12		0.143903	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
671	chr12	11279091	11279092	rs1031391	23966204	Ledda M	2013-08-20	Hum Mol Genet	GWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.	Bitter taste perception	503 Brazilian ancestry individuals	104 Brazilian ancestry individuals	12p13.2	Tas2R31, Tas2R43	rs1031391-?	NR	2E-19	(Quinine)	0.23	[0.18-0.28] unit increase	Illumina [~ 1000000]	N
671	chr12	11322500	11322501	rs2123007	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMY1A	5,361 Icelandic ancestry individuals	NA	12p13.2		rs2123007-A	0.4485	2E-13		0.137641	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
671	chr12	11329547	11329548	rs73053413	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	12p13.2	PRR4, TAS2R14, TAS2R42, TAS2R15	rs73053413-C	0.836535	7E-13		0.021681	[0.016-0.028] unit increase	Affymetrix [19400838] (imputed)	N
671	chr12	11337441	11337442	rs319277	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	12p13.2	TAS2R42	rs319277-A	0.8366	3E-12		0.0144	[0.01-0.019] unit increase	Affymetrix [~ 7740000] (imputed)	N
671	chr12	11341911	11341912	rs67595273	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA		NR	rs67595273-A	0.18	4E-6		1.62	[-0.5556-3.7956]	Affymetrix [at least 143006] (imputed)	N
672	chr12	11434171	11434172	rs141977740	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.2		rs141977740-G	0.010683	9E-9		0.061907	[0.041-0.083] unit increase	Illumina [7980478] (imputed)	N
672	chr12	11462274	11462275	rs1834857	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12p13.2	NR	rs1834857-?	NR	3E-6		0.135664	[0.079-0.192] unit decrease	NR [13958389] (imputed)	N
673	chr12	11547531	11547532	rs2900174	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	12p13.2	PRB2	rs2900174-G	NR	1E-6		3.3	[2.0-5.5]	NR [7738399] (imputed)	N
673	chr12	11547531	11547532	rs2900174	22142827	Innocenti F	2011-12-05	Clin Cancer Res	A genome-wide association study of overall survival in pancreatic cancer patients treated with gemcitabine in CALGB 80303.	Response to gemcitabine in pancreatic cancer	294 European ancestry cases	NA	12p13.2	PRB2	rs2900174-G	NR	1E-6		3.3	[2.00-5.50]	Illumina [330690]	N
673	chr12	11558876	11558877	rs71455379	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	12p13.2	PRB2	rs71455379-?	0.06	9E-6	(Age 20-60 years)	1.89	[1.43-2.5]	Affymetrix, Illumina [up to 17585496] (imputed)	N
673	chr12	11648417	11648418	rs2908835	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	12p13.2	AC007450.3	rs2908835-T	0.23	7E-6	(simple RT)	0.14	[0.08-0.20] unit increase	Illumina [~ 610000]	N
674	chr12	11727654	11727655	rs117686994	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Arm total mass	2,294 White British ancestry female individuals	NA	12p13.2		rs117686994-G	NR	1E-8		0.98	kg increase	NR [6137607] (imputed)	N
674	chr12	11727654	11727655	rs117686994	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Arm fat mass	2,294 White British ancestry female individuals	NA	12p13.2		rs117686994-G	NR	1E-8		662.11	g increase	NR [6137607] (imputed)	N
674	chr12	11747115	11747116	rs10743966	30363675	Cha EDK	2018-09-27	J Obes	Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.	Subcutaneous adipose tissue	2,545 European ancestry individuals	NA	12p13.2	NR	rs10743966-?	NR	3E-8		3405.79	[2206.27-4605.31] unit increase	Illumina [629675]	N
674	chr12	11774154	11774155	rs6488439	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	12p13.2	NR	rs6488439-A	NR	5E-6	(random effect)	1.0752687	NR	NR [6904914] (imputed)	N
674	chr12	11777911	11777913	rs36023501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p13.2		rs36023501-C	NR	4E-8		0.0131	[0.0084-0.0178] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
674	chr12	11781034	11781035	rs12815523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.2		rs12815523-?	NR	9E-10				NR [~ 8900000] (imputed)	N
674	chr12	11791028	11791029	rs11054402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p13.2		rs11054402-T	NR	1E-8		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
674	chr12	11791627	11791628	rs35764600	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p13.2	ETV6	rs35764600-G	0.600787	2E-10		0.0131347	[0.0091-0.0172] unit decrease	Affymetrix [NR] (imputed)	N
674	chr12	11791627	11791628	rs35764600	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p13.2	NR	rs35764600-G	0.601895	2E-10		0.0129164	[0.009-0.0169] unit increase	NR [NR]	N
674	chr12	11791684	11791685	rs12824533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12p13.2		rs12824533-G	NR	7E-16		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
674	chr12	11791684	11791685	rs12824533	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12p13.2	ETV6	rs12824533-A	0.600933	4E-19		0.00351627	[0.0027-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
674	chr12	11791684	11791685	rs12824533	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12p13.2	PRB2, ETV6	rs12824533-G	0.4	8E-13		7.17	z-score increase	Affymetrix [4312306] (imputed)	N
674	chr12	11793196	11793197	rs117321697	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12p13.2	NR	rs117321697-?	NR	2E-8				Illumina [7760689] (imputed)	N
675	chr12	11800567	11800568	rs12580759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs12580759-T	0.0401456	2E-18				Affymetrix, Illumina [24332387] (imputed)	N
675	chr12	11800567	11800568	rs12580759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs12580759-T	0.0402904	7E-13				Affymetrix, Illumina [24558453] (imputed)	N
675	chr12	11800937	11800938	rs2541138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.2	ETV6	rs2541138-G	0.9492242	1E-12		0.035997383	[0.026-0.046] unit increase	Affymetrix [93095623] (imputed)	N
675	chr12	11800937	11800938	rs2541138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.2		rs2541138-?	NR	3E-16				NR [~ 8900000] (imputed)	N
675	chr12	11803302	11803303	rs139273519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p13.2	ETV6	rs139273519-C	0.038708	1E-10		0.03693488	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr12	11803302	11803303	rs139273519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12p13.2	ETV6	rs139273519-C	0.038707	9E-12		0.039276138	[0.028-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr12	11803302	11803303	rs139273519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.2	NR	rs139273519-C	0.039022	4E-18		0.041781	[0.032-0.051] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
675	chr12	11803302	11803303	rs139273519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p13.2	NR	rs139273519-C	0.039003	3E-14		0.036652	[0.027-0.046] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
675	chr12	11830517	11830518	rs2724625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p13.2	NR	rs2724625-C	0.031752	6E-12		0.036408	[0.026-0.047] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
675	chr12	11830792	11830793	rs34038917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.2	NR	rs34038917-T	0.0360313	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
675	chr12	11840476	11840477	rs17817634	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	12p13.2	NR	rs17817634-T	0.162392088	5E-6		0.17600146	[0.1-0.25] unit increase	Affymetrix [536506]	N
675	chr12	11855623	11855624	rs2187642	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12p13.2	ETV6	rs2187642-A	0.37581	1E-14		0.0111759	[0.0083-0.014] unit decrease	Affymetrix [12370749]	N
675	chr12	11855623	11855624	rs2187642	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12p13.2	ETV6	rs2187642-A	0.39	2E-6		4.6	[2.64-6.56] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
675	chr12	11855772	11855773	rs2856321	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12p13.2	ETV6	rs2856321-A	0.639	8E-24		0.031	[0.025-0.037] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
675	chr12	11855772	11855773	rs2856321	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12p13.2	ETV6	rs2856321-G	0.37	3E-11		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
675	chr12	11855772	11855773	rs2856321	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p13.2	ETV6	rs2856321-A	0.64	5E-15		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
675	chr12	11866062	11866063	rs2860431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.2		rs2860431-T	NR	6E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
675	chr12	11870767	11870768	rs2724616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.2		rs2724616-G	0.72567	9E-13		0.0160844	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
675	chr12	11870767	11870768	rs2724616	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.2	ETV6	rs2724616-?	NR	2E-16		0.026207639	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
675	chr12	11878463	11878464	rs2900208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.2		rs2900208-?	NR	2E-69				NR [~ 8900000] (imputed)	N
675	chr12	11878463	11878464	rs2900208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p13.2	NR	rs2900208-?	NR	6E-6	(female)	0.11426	[0.065-0.164] unit increase	Affymetrix [7794483] (imputed)	N
675	chr12	11878463	11878464	rs2900208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p13.2	NR	rs2900208-?	NR	2E-7	(male)	0.18961	[0.12-0.26] unit increase	Affymetrix [7794483] (imputed)	N
675	chr12	11878463	11878464	rs2900208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p13.2	NR	rs2900208-?	NR	2E-11		0.1539	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
675	chr12	11880580	11880581	rs10845408	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.2	ETV6	rs10845408-T	0.3538	3E-38		0.0255	[0.022-0.029] unit increase	Affymetrix [18391927] (imputed)	N
675	chr12	11880608	11880610	rs34928504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.2		rs34928504-T	NR	1E-47		0.0204	[0.018-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
675	chr12	11890770	11890771	rs2856344	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	12p13.2		rs2856344-A	0.583	2E-9	(EA)	5.972	NR z score decrease	Illumina [11532091] (imputed)	N
675	chr12	11891164	11891172	rs146216907	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p13.2	ETV6	rs146216907-CTCCCTCCT	0.6092	2E-11		0.0448	[0.032-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
675	chr12	11897896	11897897	rs117864888	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p13.2	NR	rs117864888-T	0.968293	3E-8		0.0303073	[0.02-0.041] unit increase	Affymetrix [15000001]	N
675	chr12	11906033	11906034	rs7303518	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p13.2	NR	rs7303518-G	NR	8E-19		0.0214	[0.017-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
675	chr12	11917396	11917397	rs7963499	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	12p13.2	NR	rs7963499-T	NR	9E-7				Affymetrix [at least 811691] (imputed)	N
675	chr12	11919406	11919407	rs3825083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12p13.2		rs3825083-?	NR	2E-10				NR [~ 8900000] (imputed)	N
676	chr12	11941578	11941579	rs2856328	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	12p13.2	ETV6	rs2856328-?		4E-6	(EA)	0.161	[0.092-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
676	chr12	11942524	11942525	rs73292433	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Histidine meal response (LMM)	11,410 individuals	NA	12p13.2		rs73292433-G	0.280822	4E-8		0.186733	[0.13-0.24] unit increase	Illumina [7568622] (imputed)	N
676	chr12	11942719	11942720	rs2856329	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	12p13.2	NR	rs2856329-?		6E-6	(AA)			Illumina [up to 524000]	N
676	chr12	11962572	11962573	rs7314811	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	12p13.2	NR	rs7314811-C	NR	3E-6	(univariable, co-dominant)	5.974	[2.803-12.805]	Illumina [729373]	N
676	chr12	11962572	11962573	rs7314811	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p13.2	NR	rs7314811-C	0.35010278555506	4E-6	(IGP35)	0.1452	[0.083-0.207] unit decrease	Illumina [~ 2500000] (imputed)	N
676	chr12	11964939	11964940	rs16907305	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	12p13.2	NR	rs16907305-A	NR	8E-6	(univariable, co-dominant)	5.55	[2.611-11.857]	Illumina [729373]	N
676	chr12	11998775	11998776	rs73277163	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.2	RNU6-19P	rs73277163-G	NR	2E-6		1.2033695	NR	Affymetrix, Illumina [8278136] (imputed)	N
676	chr12	12009740	12009741	rs2238126	27145994	Wang M	2016-05-05	Nat Commun	Common genetic variation in ETV6 is associated with colorectal cancer susceptibility.	Colorectal cancer	1,023 Han Chinese ancestry cases and 1,306 Han Chinese ancestry controls	5,317 Han Chinese ancestry cases, 6,887 Han Chinese ancestry controls, 1,046 European ancestry cases, 1,076 European ancestry controls	12p13.2	ETV6	rs2238126-G	0.477	3E-10	Han Chinese	1.17	1.11-1.23	Illumina [691326]	N
676	chr12	12009740	12009741	rs2238126	27145994	Wang M	2016-05-05	Nat Commun	Common genetic variation in ETV6 is associated with colorectal cancer susceptibility.	Colorectal cancer	1,023 Han Chinese ancestry cases and 1,306 Han Chinese ancestry controls	5,317 Han Chinese ancestry cases, 6,887 Han Chinese ancestry controls, 1,046 European ancestry cases, 1,076 European ancestry controls	12p13.2	ETV6	rs2238126-G		3E-11		1.17	[1.12-1.23]	Illumina [691326]	N
676	chr12	12022495	12022496	rs145477191	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	12p13.2		rs145477191-?	NR	2E-8		0.0589611	[0.039-0.079] unit increase	NR [9800000] (imputed)	N
676	chr12	12022495	12022496	rs145477191	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	12p13.2		rs145477191-?	NR	3E-12		0.0649101	[0.046-0.084] unit increase	NR [9800000] (imputed)	N
676	chr12	12022495	12022496	rs145477191	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	12p13.2		rs145477191-?	NR	5E-12		0.0651186	[0.046-0.085] unit increase	NR [9800000] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.2	ETV6	rs145477191-C	0.009216	1E-9		0.07265517	[0.049-0.096] unit increase	Affymetrix [93095623] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.2	ETV6	rs145477191-C	0.00919000000000003	8E-12		0.08265444	[0.059-0.106] unit increase	Affymetrix [93095623] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.2	ETV6	rs145477191-C	0.009216	1E-10		0.0707111	[0.049-0.092] unit increase	Affymetrix [93095623] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.2	ETV6	rs145477191-C	0.009216	3E-11		0.07861009	[0.055-0.102] unit increase	Affymetrix [93095623] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.2	NR	rs145477191-C	0.009102	2E-10		0.062959	[0.044-0.082] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
676	chr12	12022495	12022496	rs145477191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.2	NR	rs145477191-C	0.009192	8E-12		0.070879	[0.051-0.091] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
676	chr12	12022495	12022496	rs145477191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.2		rs145477191-?	NR	5E-11				NR [~ 8900000] (imputed)	N
676	chr12	12026870	12026871	rs55884831	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12p13.2	ETV6	rs55884831-G	NR	5E-6	(EA)			Illumina [up to 11995908] (imputed)	N
676	chr12	12026870	12026871	rs55884831	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12p13.2	ETV6	rs55884831-G	NR	5E-6				Illumina [up to 11995908] (imputed)	N
676	chr12	12034785	12034786	rs7138449	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p13.2	NR	rs7138449-T	0.05052	2E-8	(MT1H)	0.02635	NR unit increase	Illumina [1671387] (imputed)	N
677	chr12	12088739	12088740	rs11054531	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.2	NR	rs11054531-?	NR	1E-15				Affymetrix [NR]	N
677	chr12	12109774	12109775	rs3020811	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	12p13.2	LRP6	rs3020811-?		1E-8				Illumina [563980]	N
677	chr12	12129960	12129961	rs11054575	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12p13.2	NR	rs11054575-C	NR	2E-23		0.0402	[0.032-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
677	chr12	12163682	12163683	rs3903005	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	12p13.2	ETV6, BCL2L14	rs3903005-?	NR	2E-8		0.05321	[0.035-0.072] unit increase novel	Illumina [6108953] (imputed)	N
677	chr12	12168130	12168131	rs73060045	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12p13.2	RNU6-19P	rs73060045-G	NR	8E-7		1.1214534	NR	Affymetrix, Illumina [8278136] (imputed)	N
677	chr12	12173710	12173711	rs10845450	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	12p13.2	ETV6, BCL2L14, LRP6	rs10845450-G	0.12	6E-7		0.7	[0.43-0.97] unit decrease	Illumina [8248960] (imputed)	N
678	chr12	12205319	12205320	rs117080167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12p13.2		rs117080167-T	NR	2E-12		0.0318	[0.023-0.041] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
678	chr12	12209126	12209127	rs10845461	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p13.2	NR	rs10845461-G	0.0822821	2E-8		0.0316432	[0.021-0.043] unit decrease	NR [19129689] (imputed)	N
678	chr12	12209202	12209203	rs117113238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p13.2		rs117113238-A	NR	4E-14		0.0261	[0.019-0.033] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
678	chr12	12209202	12209203	rs117113238	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12p13.2	BCL2L14	rs117113238-A	0.0939	5E-14		0.0039	[0.0027-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
678	chr12	12209202	12209203	rs117113238	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12p13.2	BCL2L14	rs117113238-A	0.0946	2E-14		0.0039	[0.0027-0.0051] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
678	chr12	12209202	12209203	rs117113238	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12p13.2	BCL2L14	rs117113238-A	0.0939	3E-7		0.0081	[0.005-0.0112] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
678	chr12	12212561	12212562	rs61923174	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12p13.2		rs61923174-?	NR	2E-6		0.484794	[0.29-0.68] unit decrease	Illumina [9842460] (imputed)	N
678	chr12	12228873	12228874	rs186910369	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BCL2L14	rs186910369-?	NR	2E-9		2.91875	[NR] unit increase	Affymetrix [NR] (imputed)	N
678	chr12	12228873	12228874	rs186910369	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BCL2L14	rs186910369-?	NR	1E-8	(female)	2.23037	[NR] unit increase	Affymetrix [NR] (imputed)	N
678	chr12	12248098	12248099	rs885720	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	12p13.2	BCL2L14	rs885720-?	NR	2E-6	(Gaussian-weighted model)			Illumina [501584]	N
678	chr12	12270289	12270290	rs2160525	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.2	LRP6	rs2160525-A	0.190696	3E-21		0.0224841	[0.018-0.027] unit increase	NR [13737936] (imputed)	N
678	chr12	12271573	12271574	rs71457130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p13.2		rs71457130-?	NR	8E-15				NR [~ 8900000] (imputed)	N
678	chr12	12271573	12271574	rs71457130	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p13.2	NR	rs71457130-T	0.0635712	3E-15		0.0503429	[0.038-0.063] unit increase	NR [19129689] (imputed)	N
678	chr12	12277081	12277082	rs142989458	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.2		rs142989458-?	NR	9E-13		0.0605724	[0.044-0.077] unit increase	Affymetrix [20259828] (imputed)	N
678	chr12	12289999	12290000	rs10772533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.2		rs10772533-?	NR	9E-24				NR [~ 8900000] (imputed)	N
678	chr12	12289999	12290000	rs10772533	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.2		rs10772533-?	NR	1E-22		0.0263081	[0.021-0.032] unit increase	Affymetrix [20259828] (imputed)	N
679	chr12	12362623	12362624	rs137926455	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.2	LRP6	rs137926455-A	0.985849	3E-11		0.0489777	[0.035-0.063] unit increase	NR [13737936] (imputed)	N
679	chr12	12376464	12376465	rs11054731	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p13.2	LRP6	rs11054731-A	0.89	6E-6	(AA)	0.21	[0.11-0.31] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
679	chr12	12419718	12419719	rs78631600	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.2	Intergenic	rs78631600-T	0.0837	7E-9	(MTAG)	0.0137	[0.009-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
679	chr12	12428340	12428341	rs10845503	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p13.2	NR	rs10845503-A	0.302076	4E-19		0.0301221	[0.024-0.037] unit decrease	NR [19129689] (imputed)	N
679	chr12	12434237	12434238	rs1074993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p13.2		rs1074993-?	NR	2E-8				NR [~ 8900000] (imputed)	N
679	chr12	12435609	12435610	rs10845506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p13.2		rs10845506-?	NR	8E-16				NR [~ 8900000] (imputed)	N
680	chr12	12458664	12458665	rs11054786	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Tandem gait	2,946 individuals	NA	12p13.2	LRP6, MANSC1	rs11054786-T	0.9	1E-6		0.59	[0.35-0.83] unit increase	Illumina [6200000] (imputed)	N
680	chr12	12484135	12484136	rs78807762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.2		rs78807762-?	NR	3E-10				NR [~ 8900000] (imputed)	N
680	chr12	12487446	12487447	rs2160588	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANSC1	5,366 Icelandic ancestry individuals	NA	12p13.2		rs2160588-A	0.09618	1E-37		0.390434	[0.33-0.45] unit increase	Illumina [7506463] (imputed)	N
680	chr12	12487446	12487447	rs2160588	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p13.2	MANSC1	rs2160588-A	0.12	9E-42	(MANSC domain-containing protein 1, MANSC1.9557.5.3)	0.5	[0.42-0.58] unit increase	Affymetrix [10572788] (imputed)	N
680	chr12	12488786	12488787	rs2417092	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12p13.2	NR	rs2417092-?	NR	8E-6				Illumina [NR] (imputed)	N
680	chr12	12489526	12489527	rs2080520	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12p13.2	NR	rs2080520-?	NR	8E-6				Illumina [NR] (imputed)	N
680	chr12	12490913	12490914	rs61922044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p13.2	MANSC1	rs61922044-G	0.9053125	2E-19	(MANSC1, 9557_5_3)	0.3597857	[0.28-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
680	chr12	12496085	12496086	rs3741798	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	12p13.2	NR	rs3741798-?	NR	7E-13	(X-linked interleukin-1 receptor accessory protein-like 2)			Illumina [514227]	N
680	chr12	12497478	12497479	rs61922051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MANSC1	rs61922051-?	NR	6E-9	(female)	0.9427	[NR] unit decrease	Affymetrix [NR] (imputed)	N
680	chr12	12503468	12503469	rs11054833	30563176	Westermair AL	2018-12-05	Biomolecules	Association of Genetic Variation at AQP4 Locus with Vascular Depression.	Severe depressive disorders in coronary artery disease	78 European ancestry cases, 264 European ancestry controls	NA	12p13.2	NR	rs11054833-A	0.13	3E-6		2.47	[1.6-3.8]	Affymetrix [6341066] (imputed)	N
680	chr12	12509313	12509314	rs11054841	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12p13.2	NR	rs11054841-?	NR	8E-6				Illumina [NR] (imputed)	N
680	chr12	12515076	12515077	rs10772556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12p13.2		rs10772556-T	NR	6E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
680	chr12	12515328	12515329	rs11054848	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12p13.2	BORCS5	rs11054848-G	0.63	2E-8		5.58	z-score increase	Affymetrix [4314223] (imputed)	N
680	chr12	12521150	12521151	rs61923561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.2	LOH12CR1	rs61923561-A	0.0136500000000001	5E-14		0.076365925	[0.056-0.096] unit increase	Affymetrix [93095623] (imputed)	N
680	chr12	12521150	12521151	rs61923561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.2	LOH12CR1	rs61923561-A	0.013644	9E-17		0.08435163	[0.064-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr12	12521150	12521151	rs61923561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.2	LOH12CR1	rs61923561-A	0.013642	7E-21		0.09483905	[0.075-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr12	12521150	12521151	rs61923561	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12p13.2	LOH12CR1	rs61923561-A	0.0151	2E-10		0.1005446	[0.069-0.132] unit decrease	Affymetrix [~ 2500000] (imputed)	N
680	chr12	12521150	12521151	rs61923561	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.2	LOH12CR1	rs61923561-A	0.0151	3E-14		0.1217438	[0.09-0.153] unit decrease	Affymetrix [~ 2500000] (imputed)	N
680	chr12	12533493	12533494	rs11054864	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BORCS5	rs11054864-?	NR	2E-9	(female)	0.906936	[NR] unit decrease	Affymetrix [NR] (imputed)	N
680	chr12	12544265	12544266	rs9645752	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	12p13.2	BORCS5	rs9645752-?	NR	5E-6				Illumina [501584]	N
680	chr12	12557599	12557600	rs10505765	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p13.2	LOH12CR1	rs10505765-A	NR	8E-6		3.0553098	[1.74-4.37] unit decrease	Illumina [> 6200000] (imputed)	N
680	chr12	12575170	12575171	rs11054898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p13.2		rs11054898-?	NR	4E-8				NR [~ 8900000] (imputed)	N
680	chr12	12575995	12575996	rs11537452	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p13.2	NR	rs11537452-T	0.398579	2E-12		0.0222987	[0.016-0.028] unit increase	NR [19129689] (imputed)	N
681	chr12	12585380	12585381	rs10743986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p13.2		rs10743986-?	NR	2E-8				NR [~ 8900000] (imputed)	N
681	chr12	12585988	12585989	rs6488525	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	12p13.2		rs6488525-T	0.499349	5E-8		0.0225305	[0.014-0.031] unit increase	NR [11722792] (imputed)	N
681	chr12	12600079	12600080	rs11054914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p13.2	LOH12CR1	rs11054914-G	0.380533	1E-10		0.01474533	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
681	chr12	12600079	12600080	rs11054914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.2	LOH12CR1	rs11054914-G	0.380582	5E-11		0.015043128	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
681	chr12	12601461	12601461	rs34937700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	12p13.2		rs34937700-C	0.666008	7E-9		0.0257143	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
681	chr12	12601461	12601461	rs34937700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	12p13.2		rs34937700-C	0.666008	5E-9		0.0259473	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
681	chr12	12601461	12601461	rs34937700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	12p13.2		rs34937700-C	0.666008	1E-8		0.0251372	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
681	chr12	12601952	12601953	rs7967111	34032881	Du M	2021-05-25	Intensive Care Med	Integrative omics provide biological and clinical insights into acute respiratory distress syndrome.	Acute respiratory distress syndrome	1,250 European ancestry cases, 1,583 European ancestry controls, 387 African American cases, 387 African American controls	NA	12p13.2	BORCS5	rs7967111-G	0.444	7E-8	(EA)	1.35	[1.21-1.51]	Illumina [3817416] (imputed)	N
681	chr12	12601952	12601953	rs7967111	34032881	Du M	2021-05-25	Intensive Care Med	Integrative omics provide biological and clinical insights into acute respiratory distress syndrome.	Acute respiratory distress syndrome	1,250 European ancestry cases, 1,583 European ancestry controls, 387 African American cases, 387 African American controls	NA	12p13.2	BORCS5	rs7967111-G	0.444	4E-6		1.26	[1.14-1.39]	Illumina [3817416] (imputed)	N
681	chr12	12612435	12612436	rs7312010	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	12p13.2	NR	rs7312010-A	0.4064	1E-14		1.1	[1.07-1.12]	Affymetrix, Illumina [7072771] (imputed)	N
681	chr12	12618689	12618690	rs3751262	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12p13.2	LOH12CR1	rs3751262-A	0.0892	4E-6		0.0458	[0.026-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
681	chr12	12619863	12619864	rs7961296	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	12p13.2		rs7961296-T	0.05	3E-7		0.27	[0.17-0.37] decrease	Illumina [9806907] (imputed)	N
681	chr12	12622135	12622136	rs4763832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.2	LOH12CR1	rs4763832-G	0.430692	7E-11		0.014717105	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
681	chr12	12627408	12627409	rs736106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p13.2		rs736106-A	0.26	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
681	chr12	12627409	12627410	rs736107	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p13.2	DUSP16	rs736107-A	0.3295	1E-9		0.1727	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
681	chr12	12648842	12648843	rs11054935	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	12p13.2	NR	rs11054935-G	0.2756	6E-8	(EA)	1.0779562	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
681	chr12	12648842	12648843	rs11054935	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12p13.2	NR	rs11054935-G	0.2756	5E-6	(EA)	1.0518209	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
681	chr12	12656759	12656760	rs11609905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p13.2		rs11609905-?	NR	8E-14				NR [~ 8900000] (imputed)	N
681	chr12	12657512	12657513	rs11612508	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12p13.2	LOH12CR1	rs11612508-G	0.267	1E-8		1.058	[1.025-1.091]	Affymetrix, Illumina [1230000] (imputed)	N
682	chr12	12724614	12724622	rs200992198	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.2	DUSP16, CREBL2	rs200992198-?	NR	2E-9		0.03578367	[0.024-0.047] unit decrease	Illumina [27896057] (imputed)	N
682	chr12	12729315	12729316	rs12302103	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	12p13.2	LOC644467	rs12302103-A	0.267	4E-6	(n-6 PUFA)			Affymetrix [590000]	N
682	chr12	12738485	12738486	rs881613	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12p13.2	NR	rs881613-A	0.301183	3E-8		0.0171593	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
682	chr12	12749624	12749625	rs10845585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p13.2		rs10845585-A	0.448971	3E-11		0.015132727	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr12	12749624	12749625	rs10845585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p13.2	NR	rs10845585-G	0.550294	5E-12		0.013332	[0.0096-0.0171] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
682	chr12	12773520	12773521	rs12822507	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.1	CREBL2	rs12822507-A	0.57	2E-8		1.1628		Illumina [2100739] (imputed)	N
682	chr12	12796066	12796067	rs763311	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	12p13.1	CREBL2	rs763311-?		2E-7	(BB-153)	0.89	[0.56-1.22] unit increase	Affymetrix [629686]	N
682	chr12	12817946	12817947	rs11055008	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p13.1	chr12mb12	rs11055008-G	0.408197995	5E-6		0.1472	[0.084-0.211] unit decrease	Affymetrix [~ 9800000] (imputed)	N
682	chr12	12819860	12819861	rs719839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p13.1	Intergenic	rs719839-A	0.5397	6E-9	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
682	chr12	12823167	12823168	rs188066942	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12p13.1	RP11-180M15.3, GPR19	rs188066942-A	0.992	5E-6		0.2076	[0.12-0.3] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
682	chr12	12825236	12825237	rs10845602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p13.1		rs10845602-G	NR	4E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
682	chr12	12825236	12825237	rs10845602	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12p13.1	NR	rs10845602-A	0.71	6E-31		1.21	[1.18-1.24]	Illumina [11270530] (imputed)	N
682	chr12	12827899	12827900	rs7969505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.1		rs7969505-?	NR	2E-10				NR [~ 8900000] (imputed)	N
682	chr12	12828527	12828528	rs7309378	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	12p13.1	NR	rs7309378-?	NR	1E-7	(BGN)	0.2	[0.12-0.28] unit decrease	Illumina [4020654] (imputed)	N
682	chr12	12830036	12830037	rs12813102	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	12p13.1	GPR19	rs12813102-C	0.04	8E-6		0.43	[0.23-0.63] unit increase	Illumina [5918868] (imputed)	N
682	chr12	12834893	12834894	rs10845606	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	12p13.1	NR	rs10845606-C	NR	6E-6				Illumina [NR] (imputed)	N
682	chr12	12834893	12834894	rs10845606	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	12p13.1	GPR19	rs10845606-A	0.31	3E-6		0.7588	[NR]	Illumina [421909] (imputed)	N
682	chr12	12834893	12834894	rs10845606	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.1	GPR19	rs10845606-C	0.71	4E-17		1.2658		Illumina [2100739] (imputed)	N
683	chr12	12850367	12850368	rs10492237	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12p13.1		rs10492237-T	0.973808	9E-6		0.0362502	[0.02-0.052] unit decrease	Illumina [13900000] (imputed)	N
683	chr12	12851338	12851339	rs10492235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12p13.1		rs10492235-T	0.796	2E-8				Affymetrix [10369434] (imputed)	N
683	chr12	12852107	12852108	rs111909987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.1		rs111909987-?	NR	2E-8				NR [~ 8900000] (imputed)	N
683	chr12	12866910	12866911	rs7486387	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p13.1	NR	rs7486387-A	0.2688	4E-8	(East Asian)	0.396	[0.25-0.54] unit decrease	Illumina [6200000] (imputed)	N
683	chr12	12868700	12868701	rs35756741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.1		rs35756741-?	NR	3E-33				NR [~ 8900000] (imputed)	N
683	chr12	12870694	12870695	rs34330	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12p13.1	CDKN1B	rs34330-C	0.52	5E-12		1.1905		Illumina [2100739] (imputed)	N
683	chr12	12871098	12871099	rs2066827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p13.1		rs2066827-G	NR	4E-8		0.0147	[0.0094-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
683	chr12	12871098	12871099	rs2066827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p13.1		rs2066827-G	NR	1E-9		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
683	chr12	12871098	12871099	rs2066827	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12p13.1	NR	rs2066827-T	NR	3E-10		1.055	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
683	chr12	12871098	12871099	rs2066827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.1	CDKN1B	rs2066827-T	0.7675	2E-16		0.0178	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
683	chr12	12871098	12871099	rs2066827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12p13.1	CDKN1B	rs2066827-T	0.768	3E-7		0.01	[0.0041-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
683	chr12	12871098	12871099	rs2066827	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12p13.1	CDKN1B	rs2066827-T	0.768	3E-11		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
683	chr12	12871098	12871099	rs2066827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.1	CDKN1B	rs2066827-G	0.23267	3E-11		0.01745116	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12871098	12871099	rs2066827	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p13.1	NR	rs2066827-G	0.289	2E-10		0.0321	[0.022-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
683	chr12	12871098	12871099	rs2066827	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p13.1	CDKN1B	rs2066827-G	0.235	4E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
683	chr12	12871098	12871099	rs2066827	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12p13.1	CDKN1B	rs2066827-T	0.76	2E-9		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
683	chr12	12872484	12872484	rs3093733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p13.1		rs3093733-CA	NR	1E-9		0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
683	chr12	12872484	12872484	rs3093733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12p13.1		rs3093733-CA	0.402551	1E-9		0.0169682	[0.012-0.022] unit decrease	Illumina [13479924] (imputed)	N
683	chr12	12872484	12872484	rs3093733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p13.1	CDKN1B	rs3093733-CA	0.286751	5E-22		0.024022816	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12873747	12873748	rs34327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs34327-C	0.520831	2E-49				Affymetrix, Illumina [23472807] (imputed)	N
683	chr12	12873747	12873748	rs34327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.1	NR	rs34327-C	0.523078	6E-42		0.025891	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
683	chr12	12873747	12873748	rs34327	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12p13.1	NR	rs34327-C	0.520306	2E-8		0.0381395	[0.025-0.052] unit increase	Affymetrix [17914406] (imputed)	N
683	chr12	12873747	12873748	rs34327	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p13.1	CDKN1B	rs34327-T	0.48	7E-7	(Japanese)	0.3766	[0.23-0.53] unit decrease	Illumina [6200000] (imputed)	N
683	chr12	12873747	12873748	rs34327	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p13.1	CDKN1B	rs34327-T	0.4784	1E-7	(Japanese)	0.2847	[0.18-0.39] unit decrease	Illumina [6200000] (imputed)	N
683	chr12	12873747	12873748	rs34327	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p13.1	CDKN1B	rs34327-T	0.4784	9E-7	(Japanese)	0.2376	[0.14-0.33] unit decrease	Illumina [6200000] (imputed)	N
683	chr12	12873747	12873748	rs34327	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	12p13.1	CDKN1B	rs34327-?	NR	3E-8		0.02153	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
683	chr12	12874461	12874462	rs4251697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	12p13.1		rs4251697-A	0.081959	2E-18		0.0801669	[0.062-0.098] unit increase	Illumina [13471431] (imputed)	N
683	chr12	12874461	12874462	rs4251697	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12p13.1	CDKN1B	rs4251697-A	0.097	1E-43		0.637	[0.57-0.7]	Illumina [11270530] (imputed)	N
683	chr12	12874461	12874462	rs4251697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	12p13.1	NR	rs4251697-G	0.924681	4E-15		0.087925	[0.066-0.11] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
683	chr12	12874461	12874462	rs4251697	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	12p13.1	CDKN1B	rs4251697-G	0.081	2E-10		0.059	NR unit increase	Illumina [9591901] (imputed)	N
683	chr12	12876110	12876111	rs1420023	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p13.1	CDKN1B	rs1420023-C	0.8897	2E-33		0.0365	[0.031-0.042] unit increase	Affymetrix [18391927] (imputed)	N
683	chr12	12877691	12877692	rs34325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	12p13.1		rs34325-C	0.517119	2E-11		0.0228451	[0.016-0.03] unit decrease	Illumina [13479091] (imputed)	N
683	chr12	12877691	12877692	rs34325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p13.1		rs34325-C	NR	8E-37		0.0266	[0.022-0.031] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
683	chr12	12877691	12877692	rs34325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p13.1	APOLD1, RP11-180M15.4	rs34325-C	0.524128	3E-31		0.025711356	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr12	12877691	12877692	rs34325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	12p13.1	NR	rs34325-T	0.484029	1E-10		0.023678	[0.016-0.031] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
683	chr12	12877925	12877926	rs34324	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	12p13.1	APOLD1	rs34324-A	0.43	3E-19		0.039	NR unit decrease	Illumina [9591901] (imputed)	N
683	chr12	12877925	12877926	rs34324	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	12p13.1	APOLD1	rs34324-A	0.4	3E-15		0.009	unit increase	NR [NR]	N
683	chr12	12877982	12877983	rs77216612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12p13.1		rs77216612-G	NR	2E-11		0.0352	[0.025-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
683	chr12	12877982	12877983	rs77216612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p13.1		rs77216612-G	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
683	chr12	12877982	12877983	rs77216612	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12p13.1	NR	rs77216612-A	NR	2E-7		1.038	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
683	chr12	12877982	12877983	rs77216612	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	12p13.1	NR	rs77216612-A	0.579	2E-8		1.103	[1.07-1.14]	Affymetrix, Illumina [10186136] (imputed)	N
683	chr12	12877982	12877983	rs77216612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs77216612-G	0.304668	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
683	chr12	12877982	12877983	rs77216612	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.1	APOLD1	rs77216612-A	0.712095	7E-14		0.0153133	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
683	chr12	12877982	12877983	rs77216612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.1		rs77216612-?	NR	1E-10				NR [~ 8900000] (imputed)	N
683	chr12	12877982	12877983	rs77216612	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.1		rs77216612-?	NR	4E-9		0.0139422	[0.0094-0.0185] unit decrease	Affymetrix [20259828] (imputed)	N
683	chr12	12877982	12877983	rs77216612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12p13.1	APOLD1, RP11-180M15.4	rs77216612-G	0.2874	5E-15		0.03121	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
683	chr12	12878348	12878349	rs11055030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p13.1	APOLD1	rs11055030-C	NR	1E-8		0.0193004	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
683	chr12	12878348	12878349	rs11055030	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12p13.1	APOLD1	rs11055030-G	0.71849	4E-12		0.019952	[0.014-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
683	chr12	12878362	12878363	rs35132512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p13.1	APOLD1, RP11-180M15.4	rs35132512-A	0.740791	4E-14		0.019385437	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12878572	12878597	rs148910232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p13.1		rs148910232-C	NR	1E-18		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
683	chr12	12878572	12878597	rs148910232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p13.1		rs148910232-C	NR	5E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
683	chr12	12878764	12878765	rs66561220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs66561220-C	0.30502	7E-25				Affymetrix, Illumina [24649327] (imputed)	N
683	chr12	12878764	12878765	rs66561220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p13.1		rs66561220-?	NR	2E-16				NR [~ 8900000] (imputed)	N
683	chr12	12878764	12878765	rs66561220	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	12p13.1	APOLD1	rs66561220-?	NR	2E-8		0.03271	[0.021-0.044] unit increase novel	Illumina [6108953] (imputed)	N
683	chr12	12879030	12879031	rs202116412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	12p13.1		rs202116412-?	NR	4E-9		0.130819	[0.085-0.177] unit increase	NR [9800000] (imputed)	N
683	chr12	12879253	12879254	rs7956514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.1		rs7956514-G	0.417498	4E-13		0.0147326	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
683	chr12	12879253	12879254	rs7956514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.1	APOLD1	rs7956514-G	0.286303	8E-13		0.017777072	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12879253	12879254	rs7956514	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12p13.1	PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFAF2, AC008498.1, SMIM15, ZSWIM6	rs7956514-?		2E-9				NR [7428630] (imputed)	N
683	chr12	12879253	12879254	rs7956514	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p13.1	CDKN1B, APOLD1	rs7956514-?		4E-11				NR [7428630] (imputed)	N
683	chr12	12879253	12879254	rs7956514	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p13.1	NR	rs7956514-T	0.713248	1E-12		0.0157308	[0.011-0.02] unit decrease	NR [NR]	N
683	chr12	12879253	12879254	rs7956514	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.1	APOLD1	rs7956514-?	NR	2E-13		0.02111175	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
683	chr12	12879569	12879570	rs34322	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12p13.1		rs34322-T	0.476	2E-21				Affymetrix [10369434] (imputed)	N
683	chr12	12879569	12879570	rs34322	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p13.1	NR	rs34322-T	0.4929	1E-8	(East Asian)	0.2545	[0.17-0.34] unit decrease	Illumina [6200000] (imputed)	N
683	chr12	12879569	12879570	rs34322	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12p13.1	NR	rs34322-T	0.4663	3E-8		0.01	[0.0065-0.0135] unit increase	NR [~ 27400000] (imputed)	N
683	chr12	12879569	12879570	rs34322	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p13.1	NA	rs34322-T	0.466	5E-9		0.0104	[0.0069-0.0139] unit increase	NR [~ 27400000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12p13.1		rs72656645-?	NR	6E-8				NR [~ 8900000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	4E-15				Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	2E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	5E-13				Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?		9E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	9E-14				Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	3E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12881054	12881055	rs72656645	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p13.1	LRP6, GPR19, APOLD1	rs72656645-?	NR	9E-11				Affymetrix, Illumina [18800000] (imputed)	N
683	chr12	12882290	12882290	rs35625851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p13.1		rs35625851-TA	NR	2E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
683	chr12	12882291	12882291	rs71064315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12p13.1	APOLD1	rs71064315-TA	0.467875	6E-14		0.016829409	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12883648	12883650	rs139434818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.1	APOLD1	rs139434818-G	0.863822	8E-12		0.0220405	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr12	12883648	12883650	rs139434818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p13.1	APOLD1	rs139434818-G	0.863817	4E-9		0.019684957	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr12	12885172	12885173	rs76365233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12p13.1	NR	rs76365233-G	NR	4E-9		0.0247	[0.016-0.033] unit increase	Affymetrix [9000000] (imputed)	N
683	chr12	12887810	12887811	rs56692845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.1	APOLD1	rs56692845-T	0.284681	2E-14		0.01894399	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12888437	12888438	rs2024385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12p13.1		rs2024385-A	NR	2E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
683	chr12	12888437	12888438	rs2024385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12p13.1		rs2024385-A	NR	7E-10		0.0394	[0.027-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
683	chr12	12888437	12888438	rs2024385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12p13.1		rs2024385-A	NR	2E-10		0.0371	[0.026-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
683	chr12	12888437	12888438	rs2024385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p13.1	NR	rs2024385-A	0.427057	1E-19		0.017021	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
683	chr12	12888437	12888438	rs2024385	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12p13.1	APOLD1	rs2024385-A	0.427823	2E-10		0.0505814	[0.035-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
683	chr12	12888437	12888438	rs2024385	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p13.1	APOLD1	rs2024385-A	0.4234	1E-19		0.2326	[0.18-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
683	chr12	12889288	12889289	rs4763297	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12p13.1	NR	rs4763297-C	0.4323	6E-12		0.001603	[0.0012-0.0021] unit increase	Affymetrix [NR] (imputed)	N
683	chr12	12889288	12889289	rs4763297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p13.1		rs4763297-?	NR	2E-14				NR [~ 8900000] (imputed)	N
683	chr12	12889302	12889304	rs142627190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p13.1	APOLD1	rs142627190-A	0.425085	9E-15		0.017452423	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
683	chr12	12890625	12890626	rs11055034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs11055034-A	0.295569	2E-12				Affymetrix, Illumina [23467995] (imputed)	N
683	chr12	12890625	12890626	rs11055034	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	12p13.1	NR	rs11055034-A	0.27	2E-8		0.02369687	[0.015-0.032] unit decrease	NR [1977400] (imputed)	N
683	chr12	12890625	12890626	rs11055034	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	12p13.1	NR	rs11055034-A	0.299	5E-9		0.03822831	[0.025-0.051] unit decrease	NR [1977400] (imputed)	N
683	chr12	12890625	12890626	rs11055034	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	12p13.1	CDKN1B, APOLD1	rs11055034-C	0.58	6E-12		1.119	NR	Illumina [7742602] (imputed)	N
683	chr12	12890625	12890626	rs11055034	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	12p13.1	APOLD1	rs11055034-C	0.73	2E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
683	chr12	12910098	12910099	rs11055048	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.1	CDKN1B	rs11055048-?	NR	5E-6	(TAG 58:9)	1.82004	[1.04-2.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
683	chr12	12910098	12910099	rs11055048	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p13.1	CDKN1B	rs11055048-?	NR	4E-6	(TAG 56:8)	1.8615689	[1.08-2.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
683	chr12	12952705	12952706	rs76120895	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		APOLD1	rs76120895-?	NR	2E-9	(female)	1.56012	[NR] unit decrease	Affymetrix [NR] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.1	GPRC5A	rs12811512-T	0.151646	2E-23		0.030643927	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12p13.1	GPRC5A	rs12811512-T	0.151657	7E-29		0.034281332	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.126742	3E-24				Affymetrix, Illumina [24332387] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.152033	9E-27		0.027554	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.127377	4E-31				Affymetrix, Illumina [24653286] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.152009	5E-34		0.031266	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.1278	5E-32				Affymetrix, Illumina [24558453] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p13.1	NR	rs12811512-T	0.152031	9E-35		0.031592	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
684	chr12	13046210	13046211	rs12811512	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12p13.1	GPRC5A	rs12811512-T		8E-23		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
684	chr12	13046210	13046211	rs12811512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p13.1		rs12811512-?	NR	4E-26				NR [~ 8900000] (imputed)	N
684	chr12	13046210	13046211	rs12811512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	12p13.1	GPRC5A	rs12811512-T	0.1515	8E-9		0.02850153	[0.019-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr12	13046210	13046211	rs12811512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	12p13.1	GPRC5A	rs12811512-T	0.1516	1E-9		0.02997891	[0.02-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr12	13048303	13048304	rs11055134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12p13.1		rs11055134-G	NR	2E-20		0.0263	[0.021-0.032] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
684	chr12	13048303	13048304	rs11055134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p13.1		rs11055134-G	NR	2E-24		0.027	[0.022-0.032] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
684	chr12	13048303	13048304	rs11055134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12p13.1		rs11055134-G	NR	3E-26		0.0287	[0.023-0.034] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
684	chr12	13050341	13050351	rs67037045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p13.1	GPRC5A	rs67037045-A	0.151408	3E-27		0.03335353	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr12	13065703	13065704	rs1061036	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	12p13.1	MIR614	rs1061036-T	0.549276	1E-21				Affymetrix, Illumina [NR] (imputed)	N
684	chr12	13068290	13068291	rs1148732	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	12p13.1	GPRC5A	rs1148732-?	NR	1E-9				Affymetrix, Illumina [7850345] (imputed)	N
684	chr12	13069523	13069524	rs1640875	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	12p13.1	GPRC5A	rs1640875-?	NR	3E-11				Affymetrix, Illumina [7850345] (imputed)	N
684	chr12	13069523	13069524	rs1640875	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	12p13.1	GPRC5A	rs1640875-?	NR	6E-6	(Han & Eskin random effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
684	chr12	13070751	13070752	rs1056927	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	12p13.1	MIR614	rs1056927-G	0.4391	8E-15		1.0790979	NR	Affymetrix, Illumina [NR] (imputed)	N
684	chr12	13075201	13075202	rs2111398	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	12p13.1	GPRC5A	rs2111398-G	0.43	3E-7		0.087	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
684	chr12	13091638	13091639	rs117934392	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GPRC5D-AS1	rs117934392-?	NR	8E-9	(female)	2.46864	[NR] unit decrease	Affymetrix [NR] (imputed)	N
685	chr12	13122067	13122068	rs11055176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.1	RP11-392P7.6	rs11055176-T	0.037507	9E-19		0.052377123	[0.041-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr12	13122067	13122068	rs11055176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p13.1	RP11-392P7.6	rs11055176-T	0.037505	4E-10		0.0381046	[0.027-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr12	13122067	13122068	rs11055176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.1	NR	rs11055176-T	0.036718	9E-14		0.036012	[0.027-0.045] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
685	chr12	13122067	13122068	rs11055176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs11055176-T	0.0315475	6E-13				Affymetrix, Illumina [20825802] (imputed)	N
685	chr12	13123865	13123866	rs11055177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p13.1		rs11055177-A	NR	3E-10		0.0365	[0.025-0.048] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
685	chr12	13123865	13123866	rs11055177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs11055177-A	0.0320423	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
685	chr12	13128262	13128263	rs1941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p13.1	HEBP1	rs1941-G	0.037642	9E-10		0.03549859	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
685	chr12	13128262	13128263	rs1941	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p13.1	NR	rs1941-G	0.037404	5E-12		0.034946	[0.025-0.045] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
685	chr12	13128262	13128263	rs1941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p13.1		rs1941-?	NR	2E-10				NR [~ 8900000] (imputed)	N
685	chr12	13151255	13151256	rs850939	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p13.1	HEBP1	rs850939-A	0.6027	2E-6		0.0307	[0.018-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
685	chr12	13159553	13159554	rs61167878	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	12p13.1	NR	rs61167878-?	NR	6E-7		0.4132	[0.26-0.57] unit decrease	Illumina [at least 560000] (imputed)	N
685	chr12	13202293	13202294	rs11055215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.1		rs11055215-?	NR	1E-13				NR [~ 8900000] (imputed)	N
685	chr12	13218581	13218582	rs73068961	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM234B	rs73068961-?	NR	9E-9	(female)	2.7895	[NR] unit decrease	Affymetrix [NR] (imputed)	N
685	chr12	13228384	13228385	rs561024707	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.1		rs561024707-?	NR	4E-36		0.207561	[0.17-0.24] unit decrease	Affymetrix [20259828] (imputed)	N
686	chr12	13257837	13257838	rs7308029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12p13.1		rs7308029-A	NR	2E-13		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
686	chr12	13274822	13274823	rs76024129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	12p13.1	GSG1, EMP1	rs76024129-?	NR	1E-8		0.04282	[0.028-0.058] unit increase	Illumina [6108953] (imputed)	N
686	chr12	13295924	13295927	rs547333264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	12p13.1		rs547333264-A	0.030523	5E-9		0.0664155	[0.044-0.089] unit increase	Illumina [13474682] (imputed)	N
686	chr12	13316372	13316373	rs76243438	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.1		rs76243438-?	NR	3E-14		0.0341953	[0.025-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
686	chr12	13316372	13316373	rs76243438	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.1	EMP1	rs76243438-T	0.944665	5E-8		0.0423252	[0.028-0.057] unit decrease	NR [17166351] (imputed)	N
686	chr12	13326455	13326456	rs12228756	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.1	EMP1	rs12228756-G	0.935594	7E-18		0.0322917	[0.025-0.04] unit decrease	NR [13737936] (imputed)	N
686	chr12	13327596	13327596	rs75432890	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.1		rs75432890-?	NR	1E-15		0.0375543	[0.028-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
686	chr12	13328207	13328208	rs117481343	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p13.1	EMP1	rs117481343-C	0.973756	5E-118		0.130855	[0.12-0.14] unit decrease	NR [13737936] (imputed)	N
686	chr12	13328207	13328208	rs117481343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p13.1		rs117481343-?	NR	1E-111				NR [~ 8900000] (imputed)	N
686	chr12	13328207	13328208	rs117481343	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p13.1		rs117481343-?	NR	3E-110		0.137089	[0.12-0.15] unit decrease	Affymetrix [20259828] (imputed)	N
686	chr12	13328207	13328208	rs117481343	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.1	EMP1	rs117481343-C	0.970479	7E-30	(women)	0.152895	[0.13-0.18] unit decrease	NR [17166351] (imputed)	N
686	chr12	13328207	13328208	rs117481343	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.1	EMP1	rs117481343-C	0.970436	3E-41		0.129218	[0.11-0.15] unit decrease	NR [17166351] (imputed)	N
686	chr12	13328207	13328208	rs117481343	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12p13.1	EMP1	rs117481343-C	0.970387	7E-13	(men)	0.0991861	[0.069-0.13] unit decrease	NR [17166351] (imputed)	N
686	chr12	13330337	13330338	rs77802320	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	12p13.1	intergenic	rs77802320-C	0.947	1E-7		0.4291	[0.27-0.59] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
686	chr12	13337331	13337332	rs7952921	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	12p13.1	EMP1	rs7952921-A	NR	3E-7	(adjusted for clinical variables)			Illumina [up to 3791089] (imputed)	N
687	chr12	13391290	13391291	rs3925523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p13.1	NR	rs3925523-?	NR	2E-7		0.0090871	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
687	chr12	13408261	13408263	rs149213439	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p13.1	EMP1	rs149213439-A	NR	4E-6		0.25926644	[0.15-0.37] unit decrease	Illumina [> 6200000] (imputed)	N
687	chr12	13415287	13415288	rs10772643	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12p13.1	NR	rs10772643-?		1E-12		0.0247995	[0.018-0.032] unit increase	Affymetrix [19400418] (imputed)	N
687	chr12	13416266	13416267	rs4539421	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12p13.1	EMP1	rs4539421-C	0.1077	2E-8		0.018131688	[0.012-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
687	chr12	13417616	13417617	rs10772644	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12p13.1		rs10772644-C	0.8713	6E-7		34.3367	z score increase	NR [6814003]	N
687	chr12	13417616	13417617	rs10772644	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.1		rs10772644-C	0.8887	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
687	chr12	13417616	13417617	rs10772644	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.1	Intergenic	rs10772644-C	0.8887	7E-11	(MTAG)	0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
687	chr12	13417616	13417617	rs10772644	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	12p13.1	NR	rs10772644-C	0.8835	2E-8		0.019548617	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
687	chr12	13448292	13448293	rs7132794	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	12p13.1		rs7132794-C	0.4482	9E-6		1.255	[1.135-1.388]	Affymetrix [7975321] (imputed)	N
687	chr12	13450983	13450984	rs79896703	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p13.1	NR	rs79896703-T	0.941739	3E-8		0.0225668	[0.015-0.031] unit decrease	NR [NR]	N
687	chr12	13452779	13452780	rs899435	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p13.1	EMP1	rs899435-A	0.56	9E-6	(AA)	0.15	[0.091-0.209] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
687	chr12	13492703	13492704	rs9919764	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	12p13.1	NR	rs9919764-?	NR	4E-9				NR [1665663]	N
687	chr12	13493905	13493906	rs2417268	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	12p13.1	EMPI1, C12orf36	rs2417268-T		5E-9		0.0051	[0.0033-0.0069] unit increase	Affymetrix [13304133] (imputed)	N
688	chr12	13500895	13500896	rs7971776	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12p13.1		rs7971776-A	NR	7E-7		0.7484	unit increase	Illumina [NR] (imputed)	N
688	chr12	13503880	13503881	rs10772657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p13.1	Intergenic	rs10772657-T	0.5486	3E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
688	chr12	13503880	13503881	rs10772657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12p13.1	Intergenic	rs10772657-T	0.5486	3E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
688	chr12	13505495	13505496	rs1479119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12p13.1	Intergenic	rs1479119-A	0.4385	7E-9	(MTAG)	0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
688	chr12	13505495	13505496	rs1479119	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12p13.1	C12orf36	rs1479119-A	NR	1E-9		0.017920546	[0.012-0.024] unit decrease	Affymetrix [NR]	N
688	chr12	13519995	13519996	rs11055387	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	12p13.1	C12orf36	rs11055387-C	0.0895145	8E-6	(remission - SSRI treated - 12 weeks)	2.1853	[1.84-2.53]	Affymetrix, Illumina [1200000] (imputed)	N
688	chr12	13535743	13535744	rs138999137	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Acidaminococcus sp900315205 abundance in stool	5,959 Finnish ancestry individuals	NA	12p13.1		rs138999137-G	0.0111878	4E-9		0.185868	[0.12-0.25] unit increase	Illumina [7980478] (imputed)	N
688	chr12	13536145	13536146	rs78791096	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12p13.1	NR	rs78791096-?	NR	8E-6	(AA)	0.5516	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
688	chr12	13544240	13544241	rs11055406	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p13.1	NR	rs11055406-?	NR	3E-6		0.008086	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
688	chr12	13599434	13599435	rs11608467	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	12p13.1	Intergenic	rs11608467-G	0.9793	5E-6		1.7172	[0.98-2.46] unit increase	Illumina [9520174] (imputed)	N
688	chr12	13606679	13606680	rs553530438	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - ginkgo forte tablet (UKB data field 20003_1140911734)	2,584 European ancestry cases, 453,692 European ancestry controls	NA	12p13.1		rs553530438-A	0.007024	2E-9		1.13	[0.76-1.5] unit increase	NR [11842647] (imputed)	N
688	chr12	13629380	13629381	rs1531228	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	12p13.1	NR	rs1531228-?	NR	9E-6	(Circumference)	0.2	[0.10-0.30] unit increase	Illumina [521744]	N
688	chr12	13630601	13630602	rs191413231	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p13.1	Intergenic	rs191413231-A	0.999	2E-6	(AA)	0.299	unit increase	Illumina [NR] (imputed)	N
689	chr12	13634114	13634115	rs7954376	30034349	Lin E	2018-07-06	Front Psychiatry	A Deep Learning Approach for Predicting Antidepressant Response in Major Depression Using Clinical and Genetic Biomarkers.	Response to selective serotonin reuptake inhibitors in depression	257 Taiwanese ancestry responders, 164 Taiwanese ancestry non-responders	NA	12p13.1	GRIN2B	rs7954376-?	NR	4E-6		3.448276	[2.04-5.88]	Illumina [4241701] (imputed)	N
689	chr12	13641705	13641706	rs1457614	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	12p13.1	GRIN2B	rs1457614-C	0.181	8E-6	(remission - 12 weeks)	1.4652	[1.29-1.64]	Affymetrix, Illumina [1200000] (imputed)	N
689	chr12	13681477	13681478	rs117578877	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p13.1	NR	rs117578877-T	NR	9E-7		1.15	[NR]	Illumina [7158791] (imputed)	N
689	chr12	13687394	13687395	rs61056024	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12p13.1		rs61056024-?	NR	5E-6		0.3687123	[0.21-0.53] unit decrease	Illumina [9906551] (imputed)	N
689	chr12	13687394	13687395	rs61056024	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12p13.1		rs61056024-?	NR	7E-6		0.3824923	[0.22-0.55] unit decrease	Illumina [9901720] (imputed)	N
689	chr12	13749830	13749831	rs1805508	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12p13.1	GRIN2B	rs1805508-C	0.628	4E-9		0.011790337	[0.0079-0.0157] unit decrease	Illumina [9339358] (imputed)	N
689	chr12	13758324	13758325	rs73047488	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12p13.1	GRIN2B	rs73047488-C	0.344	3E-10		0.0078	[0.0054-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
690	chr12	13787845	13787846	rs2160519	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12p13.1	GRIN2B	rs2160519-?	0.05946	2E-6	(IED)			Illumina [475971]	N
690	chr12	13812556	13812557	rs12227569	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (parent-of-origin effect)	169 European ancestry trios, 5 European ancestry father-child pairs, 19 European ancestry mother-child pairs, 8 European ancestry affected child	NA	12p13.1	GRIN2B	rs12227569-?	NR	2E-6				Illumina [NR]	N
690	chr12	13860989	13860990	rs28621435	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	12p13.1	GRIN2B	rs28621435-G	0.8849	7E-10		0.2976	[0.2-0.39] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
690	chr12	13863974	13863975	rs138009610	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12p13.1	Intergenic	rs138009610-T	0.939	1E-8		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
690	chr12	13870463	13870464	rs74442473	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	12p13.1	GRIN2B, C12orf36, MRPS18CP4	rs74442473-G	0.07	3E-8		1.02	[0.67-1.37] unit decrease	Illumina [8257341] (imputed)	N
690	chr12	13872043	13872044	rs2268118	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	12p13.1	GRIN2B	rs2268118-A		1E-8	(EA)			Illumina [NR]	N
691	chr12	13916299	13916300	rs78210707	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension	1,262 European ancestry cases,  9,608 European ancestry controls	NA	12p13.1	GRIN2B	rs78210707-?	0.011	4E-6		2.67	[2.54-2.80]	NR [~ 2000000] (imputed)	N
691	chr12	13917439	13917440	rs148979203	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12p13.1	NR	rs148979203-?	NR	4E-8				Illumina [7760689] (imputed)	N
691	chr12	13923327	13923328	rs11055612	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	12p13.1	GRIN2B	rs11055612-C	0.5	3E-6		3371.6	[NR] unit decrease	Illumina [546314]	N
691	chr12	13927895	13927896	rs6488619	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	12p13.1	GRIN2B	rs6488619-?		9E-7	(FSH levels - EA)			Affymetrix [677261]	N
691	chr12	13928448	13928449	rs7958127	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	12p13.1	GRIN2B	rs7958127-G	0.4473	4E-6		0.010565458	[0.0054-0.0157] unit increase	NR [9417325] (imputed)	N
691	chr12	13940847	13940848	rs2268127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p13.1	Intergenic	rs2268127-T	0.7111	1E-9	(MTAG)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
691	chr12	13948064	13948065	rs220558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p13.1	Intergenic	rs220558-A	0.3428	2E-10	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr12	13952135	13952136	rs2300268	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	12p13.1	GRIN2B	rs2300268-C	0.99	7E-7		1.93	NR unit decrease	Affymetrix [352228] (imputed)	N
691	chr12	13972649	13972650	rs139593264	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	12p13.1	GRIN2B	rs139593264-A	0.0228	1E-6		0.14	[0.083-0.197] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
691	chr12	13972649	13972650	rs139593264	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	12p13.1	GRIN2B	rs139593264-A	0.0229	1E-6		0.1385	[0.082-0.195] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
691	chr12	14000466	14000467	rs1861786	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.1		rs1861786-A	0.3813	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr12	14000466	14000467	rs1861786	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.1	Intergenic	rs1861786-A	0.3813	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
692	chr12	14039123	14039124	rs17834080	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p13.1	GPR19, CDKN1B, APOLD1, EMP1, GRIN2B	rs17834080-?		4E-34				Affymetrix, Illumina [NR] (imputed)	N
692	chr12	14062636	14062637	rs4764038	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12p13.1	NR	rs4764038-?	NR	5E-7		0.116992	[0.071-0.163] unit increase	NR [13958389] (imputed)	N
692	chr12	14062636	14062637	rs4764038	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12p13.1	GRIN2B	rs4764038-T	0.2543	6E-10		6.196	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
692	chr12	14064460	14064461	rs4764039	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	12p13.1		rs4764039-C	0.609	2E-8		0.06	[0.02-0.19]	Illumina [243345]	N
692	chr12	14064460	14064461	rs4764039	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	12p13.1	GRIN2B	rs4764039-?	NR	3E-6		0.005	[NR] unit increase	Illumina [478011]	N
692	chr12	14071843	14071844	rs2160729	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p13.1	NR	rs2160729-T		6E-12		0.09	[0.07-0.11] unit increase	NR [NR]	N
692	chr12	14072419	14072420	rs17834128	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	12p13.1		rs17834128-T	NR	4E-7		1.28	[1.16-1.41]	Illumina [7591411] (imputed)	N
692	chr12	14082936	14082937	rs141426703	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p13.1	NR	rs141426703-?	NR	2E-6		4.76	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
692	chr12	14086650	14086651	rs114341823	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls, 2,340 European ancestry cases, 768 European ancestry controls	144 African American cases, 354 African American controls, up to 1,551 European ancestry cases, up to 1,393 European ancestry controls	12p13.1	GRIN2B	rs114341823-?	NR	1E-7				Illumina [NR] (imputed)	N
692	chr12	14086650	14086651	rs114341823	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	12p13.1	GRIN2B	rs114341823-T	0.03	2E-7		1.7	[NR]	Illumina [NR] (imputed)	N
692	chr12	14094161	14094162	rs148192549	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	12p13.1	NR	rs148192549-T	0.98879	2E-6		0.304	[0.18-0.43] unit decrease	NR [9260588] (imputed)	N
692	chr12	14115481	14115482	rs4764043	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	12p13.1	GRIN2B	rs4764043-T	0.08	6E-6		1.17	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
693	chr12	14273071	14273071	rs199710891	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	12p13.1	NR	rs199710891-?	NR	2E-6		0.01794	[0.011-0.025] unit decrease	Affymetrix [9658292] (imputed)	N
694	chr12	14290516	14290517	rs17340879	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	12p13.1	GRIN2B	rs17340879-T	NR	2E-9		0.493	[0.33-0.65] unit decrease	Affymetrix [7701190] (imputed)	N
694	chr12	14361753	14361754	rs61920277	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	12p13.1		rs61920277-?	NR	5E-6		0.16	[0.091-0.229] unit increase	Affymetrix, Illumina [NR] (imputed)	N
694	chr12	14365108	14365109	rs58612760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p13.1		rs58612760-C	0.016562	4E-9		0.0466367	[0.031-0.062] unit decrease	Illumina [13479295] (imputed)	N
694	chr12	14365108	14365109	rs58612760	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p13.1	GRIN2B, ATF7IP	rs58612760-?	NR	3E-9		0.06638545	[0.044-0.088] unit decrease	Illumina [27896057] (imputed)	N
694	chr12	14390631	14390632	rs4237947	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	12p13.1	NR	rs4237947-A	0.97	1E-6	(Asian)	0.38	[0.23-0.53] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
694	chr12	14410484	14410485	rs17221259	24143190	Low SK	2013-10-15	PLoS One	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls	2,885 Japanese ancestry cases, 3,395 Japanese ancestry controls	12p13.1	ATF7IP	rs17221259-G	0.204	7E-6		1.252	[1.136-1.381]	Illumina [5335291] (imputed)	N
694	chr12	14413930	14413931	rs12422552	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12p13.1		rs12422552-C	NR	2E-20		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
694	chr12	14413930	14413931	rs12422552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p13.1	NR	rs12422552-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
694	chr12	14413930	14413931	rs12422552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p13.1		rs12422552-?	NR	1E-9				NR [~ 8900000] (imputed)	N
694	chr12	14413930	14413931	rs12422552	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p13.1	NA	rs12422552-C	0.2689	2E-11		0.0131	[0.0094-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
694	chr12	14413930	14413931	rs12422552	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12p13.1	intergenic	rs12422552-C	0.26	4E-15	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
694	chr12	14413930	14413931	rs12422552	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	12p13.1	NR	rs12422552-C	0.26	1E-7		1.04	[1.02-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
694	chr12	14413930	14413931	rs12422552	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12p13.1	intergenic	rs12422552-C	0.26	4E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 2600000] (imputed)	N
694	chr12	14415381	14415382	rs150460514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	12p13.1		rs150460514-A	NR	3E-8		0.0681	[0.044-0.092] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
694	chr12	14416235	14416236	rs34246472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p13.1		rs34246472-A	NR	4E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
694	chr12	14416235	14416236	rs34246472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p13.1	NR	rs34246472-A	0.054942	2E-10		0.026589	[0.018-0.035] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
694	chr12	14416917	14416918	rs10845938	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12p13.1	NR	rs10845938-G	NR	9E-17		1.057	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
694	chr12	14416917	14416918	rs10845938	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	12p13.1	RNU6-491P	rs10845938-G	NR	7E-8		1.11	[NR]	Illumina [20370935] (imputed)	N
694	chr12	14416917	14416918	rs10845938	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	12p13.1	RNU6-491P	rs10845938-G	NR	9E-7		1.07	[NR]	Illumina [20370935] (imputed)	N
694	chr12	14416917	14416918	rs10845938	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12p13.1	RNU6-491P	rs10845938-G	0.55	1E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
694	chr12	14417178	14417179	rs11055887	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p13.1	NA	rs11055887-A	0.1934	4E-9		0.0133	[0.0088-0.0178] unit decrease	NR [~ 27400000] (imputed)	N
695	chr12	14418825	14418826	rs11055888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p13.1		rs11055888-G	NR	4E-8		0.0161	[0.01-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
695	chr12	14418825	14418826	rs11055888	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	12p13.1		rs11055888-G	NR	6E-9		1.0829543	NR	Affymetrix [7846216] (imputed)	N
695	chr12	14430806	14430807	rs112655343	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	12p13.1	ATF7IP	rs112655343-T	0.101734	2E-6		0.042503	[0.025-0.06] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
695	chr12	14431167	14431168	rs75031954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.1		rs75031954-?	NR	2E-16				NR [~ 8900000] (imputed)	N
695	chr12	14483148	14483149	rs10845977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12p13.1	Intergenic	rs10845977-A	0.5971	8E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
695	chr12	14484170	14484171	rs2160726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p13.1		rs2160726-A	NR	9E-26		0.0136	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
695	chr12	14489550	14489551	rs4764080	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p13.1	NR	rs4764080-?	NR	4E-10				Affymetrix [NR]	N
695	chr12	14503655	14503656	rs79241096	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	12p13.1	ATF7IP	rs79241096-T	0.68	2E-8	(AA)	0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
695	chr12	14504834	14504835	rs73058705	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p13.1	Intergenic	rs73058705-A	0.5961	2E-12	(MTAG)	0.0128	[0.0093-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
695	chr12	14506955	14506956	rs58574713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p13.1		rs58574713-T	0.47	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
695	chr12	14511678	14511679	rs7974852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p13.1		rs7974852-A	0.5235	1E-16		0.0117	[0.009-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
695	chr12	14511678	14511679	rs7974852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p13.1	Intergenic	rs7974852-A	0.5235	3E-19	(MTAG)	0.0118	[0.0093-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
695	chr12	14511805	14511806	rs7978070	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p13.1	RPL30P11	rs7978070-T	NR	3E-8		5.551	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
695	chr12	14521181	14521182	rs10845988	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12p13.1	ATF7IP	rs10845988-T	NR	3E-10		0.018609567	[0.013-0.024] unit decrease	Affymetrix [NR]	N
695	chr12	14535907	14535908	rs35309068	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12p13.1	ATF7IP	rs35309068-G	0.4264	6E-14		0.015305758	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
696	chr12	14551024	14551025	rs7966054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12p13.1		rs7966054-?	NR	2E-9				NR [~ 8900000] (imputed)	N
696	chr12	14551408	14551409	rs11285054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p13.1	ATF7IP	rs11285054-G	0.449911	3E-11		0.015068389	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
696	chr12	14552844	14552845	rs11055965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p13.1		rs11055965-?	NR	5E-24				NR [~ 8900000] (imputed)	N
696	chr12	14554215	14554216	rs11055966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p13.1	NR	rs11055966-A	0.374188	6E-11				Affymetrix, Illumina [24246363] (imputed)	N
696	chr12	14568451	14568452	rs4764086	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12p13.1	ATF7IP	rs4764086-G	0.471066	1E-12		0.00164474	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
696	chr12	14571144	14571145	rs10772780	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p13.1		rs10772780-T	0.49	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
696	chr12	14587300	14587301	rs3213764	23359319	Jin G	2013-01-01	Neoplasia	Genome-wide association study identifies loci at ATF7IP and KLK2 associated with percentage of circulating free PSA.	Prostate-specific antigen levels	3,192 European ancestry individuals	1,722 European ancestry individuals	12p13.1	ATF7IP	rs3213764-G	0.467	2E-9		0.049	% increase	Illumina [642584]	N
696	chr12	14589717	14589718	rs572548953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p13.1		rs572548953-C	NR	4E-11		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
696	chr12	14593901	14593902	rs7310929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p13.1	ATF7IP	rs7310929-C	0.378388	6E-10		0.014225939	[0.0097-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
696	chr12	14594739	14594740	rs7296122	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7296122-C	0.499184	4E-9		0.0494387	[0.032-0.067] increase	Affymetrix [11014269] (imputed)	N
696	chr12	14595455	14595456	rs7299037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12p13.1	Intergenic	rs7299037-A	0.5033	3E-14	(MTAG)	0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
696	chr12	14595755	14595756	rs7964899	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12p13.1		rs7964899-A	0.4571	2E-10		51.70866	z score increase	NR [6814003]	N
696	chr12	14595755	14595756	rs7964899	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	12p13.1	NR	rs7964899-A	0.4446	4E-13		0.016193815	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
696	chr12	14611521	14611522	rs11055980	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12p13.1	ATF7IP	rs11055980-?	NR	2E-12		0.014355132	[0.01-0.018] unit increase	NR [7306098]	N
696	chr12	14622001	14622002	rs11055989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12p13.1		rs11055989-?	NR	4E-9				NR [~ 8900000] (imputed)	N
696	chr12	14628772	14628773	rs7313259	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p13.1	NR	rs7313259-T	0.460782	4E-10		0.0193306	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
696	chr12	14628772	14628773	rs7313259	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	12p13.1	ATF7IP	rs7313259-?	NR	4E-9		5.878	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
696	chr12	14633222	14633223	rs11055991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p13.1	Intergenic	rs11055991-A	0.5964	2E-17	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
696	chr12	14638853	14638854	rs11513649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p13.1	NR	rs11513649-T	0.375536	3E-12		0.013098	[0.0094-0.0168] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
696	chr12	14643716	14643717	rs4764094	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p13.1	NR	rs4764094-?	NR	1E-6		4.855	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
696	chr12	14653866	14653867	rs2900333	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	12p13.1	ATF7IP, PLBD1	rs2900333-T	0.35	3E-8		1.1764705	[1.11-1.25]	Illumina [9210350] (imputed)	N
696	chr12	14653866	14653867	rs2900333	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	12p13.1	ATF7IP, PLBD1	rs2900333-C	0.63	9E-13		1.2	[1.15-1.25]	Illumina [at least 371504] (imputed)	N
696	chr12	14653866	14653867	rs2900333	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	12p13.1	ATF7IP	rs2900333-C	0.62	1E-13		1.32	[1.20-1.46]	Illumina [307291]	N
696	chr12	14653866	14653867	rs2900333	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	12p13.1	ATF7IP	rs2900333-C	0.62	6E-10		1.27	[1.12-1.44]	Illumina [298782]	N
696	chr12	14660183	14660184	rs3827886	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	12p13.1	PLBD1	rs3827886-?	NR	7E-6	(SF9)			Affymetrix [5476100] (imputed)	N
696	chr12	14664249	14664250	rs2287541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p13.1	PLBD1	rs2287541-G	0.0675480000000001	3E-9		0.02612524	[0.017-0.035] unit increase	Affymetrix [93095623] (imputed)	N
698	chr12	14838468	14838469	rs1362602	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12p12.3	NR	rs1362602-G	0.168	8E-6	(Females)	0.272376	[0.15-0.39] unit decrease	Illumina [~ 6600000] (imputed)	N
698	chr12	14891896	14891897	rs10492152	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	12p12.3	NR	rs10492152-?	NR	8E-6		0.0451	[0.025-0.065] unit decrease	Illumina [at least 560000] (imputed)	N
698	chr12	14917476	14917477	rs247345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.3		rs247345-?	NR	6E-21				NR [~ 8900000] (imputed)	N
698	chr12	14924364	14924365	rs79740319	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	12p12.3		rs79740319-?	NR	9E-6		1.14171	[1.08-1.2]	NR [680312]	N
698	chr12	14933521	14933522	rs7307567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	12p12.3		rs7307567-T	NR	3E-8		0.1026	[0.066-0.139] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
699	chr12	14945416	14945417	rs7314075	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	12p12.3		rs7314075-?	NR	5E-6				Illumina [4711309] (imputed)	N
699	chr12	14948433	14948434	rs2052325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.3	WBP11	rs2052325-C	NR	2E-8		0.0159623	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
699	chr12	14958051	14958051	rs34478174	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.3	SMCO3	rs34478174-CT	0.3453	2E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix [18391927] (imputed)	N
699	chr12	14966603	14966604	rs4764124	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	12p12.3	C12orf60, HIST4H4	rs4764124-C	0.52	8E-7	(Single Height)	0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
699	chr12	14987095	14987096	rs2287226	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12p12.3	ART4	rs2287226-A	0.6019	1E-12		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
699	chr12	14988454	14988455	rs1001096	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p12.3	ART4	rs1001096-A	0.397	1E-254	(Ecto-ADP-ribosyltransferase 4, ART4.6576.1.3)	0.74	[0.7-0.78] unit increase	Affymetrix [10572788] (imputed)	N
699	chr12	14997445	14997446	rs3887182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p12.3	NR	rs3887182-G	0.6109375	3E-213	(ART4, 6576_1_3)	0.72109044	[0.68-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
699	chr12	14997445	14997446	rs3887182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p12.3	NR	rs3887182-G	0.6109375	2E-12	(MGP, 6520_87_3)	0.17191298	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
699	chr12	15016235	15016236	rs10846071	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12p12.3	NA	rs10846071-T	0.3949	4E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
699	chr12	15032859	15032860	rs34464763	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	12p12.3	C12orf60	rs34464763-A	0.3943	3E-10		0.0544	[0.038-0.071] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
699	chr12	15045202	15045203	rs2430686	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGP	5,364 Icelandic ancestry individuals	NA	12p12.3		rs2430686-G	0.3652	5E-27		0.201384	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
699	chr12	15050261	15050262	rs67482087	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p12.3	NR	rs67482087-T	0.6446875	8E-182	(ART4, 6576_1_3)	0.69005054	[0.65-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
699	chr12	15050261	15050262	rs67482087	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p12.3	NR	rs67482087-T	0.6446875	2E-15	(MGP, 6520_87_3)	0.19913997	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
699	chr12	15050736	15050737	rs2430689	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p12.3	MGP	rs2430689-C	0.606953	7E-17		0.0157747	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
699	chr12	15050736	15050737	rs2430689	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p12.3		rs2430689-?	NR	5E-14		0.0151133	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
699	chr12	15054015	15054016	rs7294636	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Finger osteoarthritis	10,804 European ancestry cases, 255,814 European ancestry controls	NA	12p12.3		rs7294636-A	0.3726	3E-16		1.1583539	[1.118200445-1.199949355]	Affymetrix, Illumina [NR] (imputed)	N
699	chr12	15063589	15063590	rs2430690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p12.3		rs2430690-?	NR	3E-15				NR [~ 8900000] (imputed)	N
699	chr12	15063994	15063995	rs11614333	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	12p12.3	ERP27	rs11614333-C	0.623	2E-12		0.1601	[0.12-0.2] kg increase	Affymetrix [at least 17000000] (imputed)	N
699	chr12	15064362	15064363	rs4764133	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	12p12.3	ERP27	rs4764133-T	0.38	4E-9		0.054	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
699	chr12	15064362	15064363	rs4764133	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Hand osteoarthritis severity (hand Klsum)	4,829 Dutch ancestry individuals	1,203 individuals	12p12.3	MGP, ERP27	rs4764133-T	0.38	3E-12		0.81	[0.57-1.05] unit increase	Illumina [10500000] (imputed)	N
699	chr12	15064362	15064363	rs4764133	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Finger osteoarthritis severity (hand Klsum)	1,791 Dutch ancestry individuals	1,203 individuals	12p12.3	MGP, ERP27	rs4764133-T	0.38	5E-14		0.65	[0.47-0.83] unit increase	Illumina [10500000] (imputed)	N
699	chr12	15064362	15064363	rs4764133	28855172	den Hollander W	2017-08-30	Ann Rheum Dis	Genome-wide association and functional studies identify a role for matrix Gla protein in osteoarthritis of the hand.	Osteoarthritis of the hand	8,743 individuals	2,836 European ancestry individuals, 1,175 individuals	12p12.3	MGP, ERP27	rs4764133-T	0.39	2E-15		0.83	[0.63-1.03] unit increase	Illumina [~ 11000000] (imputed)	N
701	chr12	15208907	15208908	rs2058787	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12p12.3	LINC01489	rs2058787-A	0.3161	6E-9		0.0195	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
701	chr12	15210373	15210374	rs11056314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p12.3		rs11056314-C	0.411424	4E-10		0.014228706	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr12	15277112	15277113	rs7306438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.3		rs7306438-?	NR	6E-19				NR [~ 8900000] (imputed)	N
701	chr12	15297358	15297359	rs7313556	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p12.3	RERG	rs7313556-A	0.3512	1E-8		0.09	[0.059-0.121] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
701	chr12	15304999	15305000	rs3748301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.3	NR	rs3748301-C	0.330838	4E-10				Affymetrix, Illumina [24332387] (imputed)	N
701	chr12	15304999	15305000	rs3748301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p12.3	NR	rs3748301-C	0.312563	3E-13		0.014648	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
701	chr12	15304999	15305000	rs3748301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.3	NR	rs3748301-C	0.329814	6E-12				Affymetrix, Illumina [24558453] (imputed)	N
701	chr12	15304999	15305000	rs3748301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p12.3	NR	rs3748301-C	0.312503	1E-13		0.014887	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
701	chr12	15305026	15305027	rs3748302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12p12.3	RERG, RERG-AS1	rs3748302-T	0.311149	3E-10		0.015118887	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr12	15306984	15306985	rs11056375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12p12.3		rs11056375-T	NR	5E-8		0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
701	chr12	15306984	15306985	rs11056375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p12.3		rs11056375-?	NR	2E-9				NR [~ 8900000] (imputed)	N
701	chr12	15307167	15307168	rs10846153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p12.3		rs10846153-G	NR	5E-9		0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
701	chr12	15307167	15307168	rs10846153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.3	NR	rs10846153-G	0.526683	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
701	chr12	15307775	15307775	rs112393215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12p12.3	RERG, RERG-AS1	rs112393215-TA	0.336528	6E-10		0.014581416	[0.01-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr12	15307775	15307775	rs112393215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p12.3	RERG, RERG-AS1	rs112393215-TA	0.336525	3E-10		0.014847898	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
701	chr12	15307775	15307775	rs112393215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12p12.3	NR	rs112393215-I	0.336832	3E-11		0.014314	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
701	chr12	15321193	15321194	rs7956634	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12p12.3	RERG	rs7956634-T	0.8104	3E-16	(EA)	0.0036	[0.0028-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
701	chr12	15321193	15321194	rs7956634	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12p12.3	RERG	rs7956634-T	0.762	2E-17		0.0034	[0.0026-0.0042] unit decrease	Affymetrix [NR] (imputed)	N
701	chr12	15321193	15321194	rs7956634	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	12p12.3	PTPRO	rs7956634-T	0.81	7E-12	(EA)	0.0068	[0.0048-0.0088] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
701	chr12	15323379	15323380	rs12826808	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		12p12.3	RERG	rs12826808-?	NR	1E-7				Affymetrix, Illumina [up to 10971307] (imputed)	N
701	chr12	15325030	15325031	rs10846157	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	12p12.3	RERG	rs10846157-A	0.729	2E-11		0.432	[0.3-0.56] unit decrease	Affymetrix [NR] (imputed)	N
701	chr12	15325030	15325031	rs10846157	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12p12.3	RERG	rs10846157-A	0.7602	1E-31		0.0034	[0.0026-0.0042] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
701	chr12	15325030	15325031	rs10846157	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12p12.3	RERG	rs10846157-A	0.8072	2E-24		0.0036	[0.0028-0.0044] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
701	chr12	15325030	15325031	rs10846157	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	12p12.3	RERG	rs10846157-A	0.76	2E-6		1.0451	[1.0263-1.0644]	Affymetrix, Illumina [9585923] (imputed)	N
701	chr12	15325030	15325031	rs10846157	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12p12.3	RERG	rs10846157-A	0.7602	4E-6		0.0037	[0.0021-0.0053] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
701	chr12	15330892	15330893	rs114383698	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		12p12.3	RERG	rs114383698-T	0.0174679	5E-6		2.39871	[1.39-3.41] unit decrease	Illumina [640625] (imputed)	N
701	chr12	15332341	15332342	rs2193172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12p12.3		rs2193172-C	NR	5E-12		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
701	chr12	15332341	15332342	rs2193172	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12p12.3	NR	rs2193172-C	0.2	1E-11		0.0157	[0.011-0.02] unit decrease	NR [NR]	N
701	chr12	15332341	15332342	rs2193172	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12p12.3	RERG	rs2193172-G	0.7075	3E-15		7.906	NR z score decrease	Illumina [26237160] (imputed)	N
702	chr12	15342462	15342463	rs10459101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	12p12.3		rs10459101-G	0.799542	3E-9		0.0263262	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
702	chr12	15344406	15344407	rs11056396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12p12.3		rs11056396-C	NR	4E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	8E-10		0.0222	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	1E-10		0.0234	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	2E-10		0.0231	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	5E-12		0.025	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	1E-17		0.0309	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15344406	15344407	rs11056396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p12.3	NR	rs11056396-C	NR	2E-13		0.0266	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15346378	15346379	rs35949897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p12.3		rs35949897-T	NR	4E-30		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
702	chr12	15346378	15346379	rs35949897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12p12.3		rs35949897-T	NR	2E-13		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
702	chr12	15351587	15351588	rs35958131	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p12.3	NR	rs35958131-A	NR	8E-13		0.0313	[0.023-0.04] unit increase	Affymetrix [9000000] (imputed)	N
702	chr12	15351587	15351588	rs35958131	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p12.3	NR	rs35958131-A	NR	1E-13		0.0326	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
702	chr12	15359062	15359063	rs7303595	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12p12.3	RERG	rs7303595-A	0.3357	7E-10		0.025313	[0.017-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
702	chr12	15381209	15381210	rs12300553	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12p12.3	RERG	rs12300553-G	0.67	7E-6	(women)	0.08	[0.045-0.115] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
702	chr12	15387518	15387519	rs1479405	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	12p12.3	RERG	rs1479405-C	0.68	1E-9		0.031	unit decrease	NR [2324712] (imputed)	N
702	chr12	15389636	15389637	rs12311304	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	12p12.3	NR	rs12311304-G	0.328	4E-6	(Alcohol dependence)			Illumina [527829]	N
702	chr12	15438031	15438032	rs1117152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.3		rs1117152-T	0.701	4E-12		0.0106	[0.0077-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
702	chr12	15438031	15438032	rs1117152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.3	Intergenic	rs1117152-T	0.701	4E-13	(MTAG)	0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
702	chr12	15448630	15448631	rs61907983	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	12p12.3		rs61907983-C	0.906977	8E-9		0.0767927	[0.051-0.102] increase	Affymetrix [NR]	N
703	chr12	15506905	15506906	rs1304739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.3		rs1304739-T	0.2764	8E-12	(conditional-joint)	0.0108	[0.0077-0.0139] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
703	chr12	15515944	15515945	rs10846167	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p12.3	PTPRO	rs10846167-T	NR	3E-9		5.92	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
703	chr12	15532890	15532891	rs55754731	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12p12.3	NR	rs55754731-T	NR	6E-9		5.815	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
703	chr12	15533130	15533131	rs10846170	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p12.3	NR	rs10846170-?	NR	1E-6		0.008692	[0.0052-0.0122] unit increase	Affymetrix [805426] (imputed)	N
703	chr12	15543478	15543479	rs1318878	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p12.3	PTPRO	rs1318878-A	NR	2E-10		6.381	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
703	chr12	15543478	15543479	rs1318878	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12p12.3	PTPRO	rs1318878-A	NR	1E-8		0.021668673	[0.014-0.029] unit decrease	Affymetrix [NR]	N
703	chr12	15579165	15579166	rs7972505	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p12.3	PTPRO	rs7972505-?		4E-6				Illumina [4322238] (imputed)	N
704	chr12	15610292	15610293	rs7315300	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	12p12.3	PTPRO	rs7315300-A	0.24	1E-7		0.223	[0.14-0.31] unit increase	Illumina [NR] (imputed)	N
704	chr12	15616586	15616587	rs73307806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs73307806-T	0.01045	2E-9	(AK2)	0.5895	NR unit increase	Illumina [1671387] (imputed)	N
704	chr12	15628092	15628093	rs72656663	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	12p12.3		rs72656663-T	0.04195	6E-6		1.634	[1.321-2.022]	Affymetrix [7975321] (imputed)	N
704	chr12	15633811	15633812	rs143843248	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis or neutropenia	45 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	12p12.3	PTPRO	rs143843248-T	NR	1E-6		7.3	[3.29-16.20]	Illumina [~ 7000000] (imputed)	N
704	chr12	15707131	15707132	rs11056556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p12.3	NR	rs11056556-?	NR	2E-6		4.742	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
704	chr12	15714746	15714747	rs73066694	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	12p12.3	NR	rs73066694-?	NR	5E-6		0.116283	[0.066-0.166] unit decrease	NR [13958389] (imputed)	N
704	chr12	15720583	15720584	rs2111170	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.3	EPS8	rs2111170-?	NR	3E-6	(TAG 52:2)	1.8462826	[1.07-2.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
705	chr12	15731743	15731744	rs1024843	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	12p12.3	PTPRO	rs1024843-T	0.7	1E-6		3.030303	[1.92-4.76]	Affymetrix [426344]	N
705	chr12	15735441	15735442	rs2300290	22126837	LeBlanc M	2011-11-28	J Psychiatr Res	Genome-wide study identifies PTPRO and WDR72 and FOXQ1-SUMO1P1 interaction associated with neurocognitive function.	Cognitive function	190 European ancestry schizophrenia cases, 157 European ancestry  bipolar disorder cases, 353 European ancestry controls	NA	12p12.3	PTPRO	rs2300290-?	NR	1E-8		1.1	[0.73-1.47] unit decrease	Affymetrix [550291]	N
705	chr12	15756488	15756489	rs17174795	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	12p12.3	PTPRO	rs17174795-C	0.07	1E-6		5.55	[2.62-11.74]	Illumina [2668805]	N
706	chr12	15930804	15930805	rs17415853	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12p12.3	EPS8	rs17415853-?	0.02	7E-7	(Ferritin)			Illumina [496032]	N
707	chr12	16094160	16094161	rs10846255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p12.3	Intergenic	rs10846255-A	0.2322	1E-8	(MTAG)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
707	chr12	16094160	16094161	rs10846255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.3	Intergenic	rs10846255-A	0.2305	1E-8	(MTAG)	0.0089	[0.0058-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
708	chr12	16124141	16124142	rs10846260	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	12p12.3	DERA	rs10846260-?		3E-6	(East Asian)			Affymetrix [702413]	N
708	chr12	16128784	16128785	rs12368628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12p12.3	Intergenic	rs12368628-C	0.7281	3E-9	(MTAG)	0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
708	chr12	16128784	16128785	rs12368628	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12p12.3	NR	rs12368628-?	NR	2E-6		4.779	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
708	chr12	16149334	16149335	rs7968170	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	12p12.3	DERA	rs7968170-?		5E-6	(endpoint 5, East Asian, dominant)	2.173913	[NR]	Illumina [> 750000]	N
708	chr12	16149334	16149335	rs7968170	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	12p12.3	DERA	rs7968170-?		5E-6	(endpoint 4, East Asian, dominant)	2.0408163	[NR]	Illumina [> 750000]	N
708	chr12	16154237	16154238	rs6488809	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	12p12.3	DERA	rs6488809-T	0.06	3E-7		1.74	[NR]	Illumina [5430816] (imputed)	N
708	chr12	16179370	16179371	rs12423382	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	12p12.3	NR	rs12423382-?	NR	3E-6	(Japanese)	0.487	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
708	chr12	16189477	16189478	rs151326733	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	12p12.3	NR	rs151326733-C	0.026	2E-8	(AA, prevalent)	2.2	[1.67-2.89]	Affymetrix [up to 15784307] (imputed)	N
709	chr12	16286081	16286082	rs1799464	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p12.3	DERA, SLC15A5	rs1799464-G	0.7132000000000001	3E-8		1.0202013		Affymetrix [11880941] (imputed)	N
709	chr12	16310815	16310816	rs10846305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antidepressants)	33,757 European ancestry cases, 270,405 European ancestry controls, 3,288 East Asian ancestry cases, 175,438 East Asian ancestry controls	NA	12p12.3		rs10846305-G	NR	4E-8		0.0438	[0.028-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
709	chr12	16310815	16310816	rs10846305	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antidepressants)	33,757 European ancestry cases, 270,405 European ancestry controls	NA	12p12.3	SLC15A5	rs10846305-G	0.391489	5E-9		0.04860727	[0.032-0.065] unit increase	Affymetrix [7288503] (imputed)	N
709	chr12	16310815	16310816	rs10846305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p12.3		rs10846305-?	NR	7E-9				NR [~ 8900000] (imputed)	N
709	chr12	16316337	16316338	rs7954112	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	12p12.3	SLC15A5	rs7954112-A	0.419	4E-8		0.013191117	[0.0085-0.0179] unit increase	Affymetrix [11515109] (imputed)	N
709	chr12	16317828	16317829	rs12580015	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based) in high deployment stress exposure	581 European ancestry cases and controls	NA	12p12.3	LOC101928362	rs12580015-G	0.2249	2E-8		2.35		Illumina [at least 664457] (imputed)	N
709	chr12	16363974	16363975	rs61915924	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	12p12.3	intergenic	rs61915924-?	NR	1E-8		0.00754778	[0.0049-0.0102] unit increase	Affymetrix [NR] (imputed)	N
710	chr12	16406689	16406690	rs10772915	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12p12.3	MGST1	rs10772915-G	0.57	5E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
710	chr12	16408939	16408940	rs1671476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.3	Intergenic	rs1671476-A	0.9262	2E-8	(MTAG)	0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
710	chr12	16427313	16427314	rs1799507	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12p12.3	SLC15A5	rs1799507-G	0.856437	3E-8		0.0108354	[0.007-0.0147] unit decrease	Affymetrix [12370749]	N
710	chr12	16470734	16470735	rs7138976	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.3	NR	rs7138976-?	NR	9E-8				Affymetrix [NR]	N
710	chr12	16470917	16470918	rs11056875	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.3	NR	rs11056875-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
710	chr12	16470917	16470918	rs11056875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.3		rs11056875-?	NR	7E-10				NR [~ 8900000] (imputed)	N
710	chr12	16475287	16475288	rs143841633	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12p12.3		rs143841633-?	NR	1E-6		1.2501266	[1.14314076820328-1.36712523375278]	Illumina [up to 7827597] (imputed)	N
710	chr12	16510581	16510583	rs779999476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	12p12.3		rs779999476-G	0.013219	2E-9		0.139003	[0.094-0.184] unit decrease	Illumina [13465896] (imputed)	N
710	chr12	16510581	16510583	rs779999476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12p12.3		rs779999476-G	NR	2E-9		0.139	[0.094-0.184] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
710	chr12	16514608	16514609	rs4149202	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.3	NR	rs4149202-?	NR	3E-19				Affymetrix [NR]	N
711	chr12	16519262	16519263	rs9332958	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	NR	rs9332958-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
711	chr12	16521056	16521057	rs758858632	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	12p12.3	MGST1	rs758858632-G	4.0E-4	8E-6		3.84356	NR	Affymetrix, Illumina [30341632] (imputed)	N
711	chr12	16567564	16567565	rs35827298	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	12p12.3	MGST1, LMO3	rs35827298-A	NR	4E-8				Illumina [up to 9353006] (imputed)	N
711	chr12	16567564	16567565	rs35827298	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	12p12.3	MGST1, LMO3	rs35827298-A	NR	5E-9		0.87	[0.83-0.91]	Illumina [up to 9353006] (imputed)	N
711	chr12	16567564	16567565	rs35827298	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	12p12.3	MGST1, LMO3	rs35827298-A	NR	1E-8	(male)	0.87	[0.82-0.91]	Illumina [up to 9353006] (imputed)	N
711	chr12	16609037	16609038	rs10772939	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	12p12.3	intergenic	rs10772939-T	NR	5E-6	(Economic policy)	0.112	[0.065-0.159] unit decrease	Illumina [628922]	N
712	chr12	16674219	16674220	rs7300446	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	12p12.3	MGST1, LMO3	rs7300446-?		1E-6		1.56	[1.30-1.87]	Illumina [540021]	N
712	chr12	16699249	16699250	rs74377925	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12p12.3	intergenic	rs74377925-G	0.013	2E-6		5.34	[2.48-11.51]	Illumina [1556551]	N
712	chr12	16743433	16743434	rs10846378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p12.3		rs10846378-G	NR	3E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
712	chr12	16743433	16743434	rs10846378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12p12.3	NR	rs10846378-G	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr12	16747033	16747034	rs10846380	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	12p12.3	NR	rs10846380-T	0.41	1E-10		0.014287	[0.0099-0.0187] unit decrease	NR [9732723] (imputed)	N
712	chr12	16747033	16747034	rs10846380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.3		rs10846380-T	0.4161	5E-10	(conditional-joint)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
712	chr12	16748720	16748721	rs11057005	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12p12.3	LMO3	rs11057005-G		2E-8		0.981	[NR]	Affymetrix [up to 79000000] (imputed)	N
712	chr12	16748720	16748721	rs11057005	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12p12.3	NR	rs11057005-G	0.441	9E-10		0.015713902	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
712	chr12	16752098	16752099	rs10846381	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	12p12.3	LMO3	rs10846381-T	0.5897	1E-6		1.1308845		Illumina [8265319] (imputed)	N
712	chr12	16753964	16753965	rs2160515	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	12p12.3	LMO3	rs2160515-A	0.429309	8E-10		6.15	z score decrease	NR [10847151] (imputed)	N
712	chr12	16755371	16755372	rs9651873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12p12.3	NR	rs9651873-C	0.442	7E-14		0.00818572	[0.006-0.0103] unit decrease	NR [9732723] (imputed)	N
712	chr12	16755371	16755372	rs9651873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	12p12.3	NR	rs9651873-C	0.441	2E-12		0.0109714	[0.0079-0.014] unit decrease	NR [9732723] (imputed)	N
712	chr12	16756507	16756508	rs2160514	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12p12.3	MGST1, LMO3	rs2160514-C	0.4373	6E-9		0.011857998	[0.0079-0.0159] unit increase	Affymetrix [up to 18485882] (imputed)	N
712	chr12	16756507	16756508	rs2160514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p12.3	Intergenic	rs2160514-A	0.5601	9E-11	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
712	chr12	16756507	16756508	rs2160514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.3		rs2160514-A	0.5548	3E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
712	chr12	16756507	16756508	rs2160514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.3	Intergenic	rs2160514-A	0.5548	2E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
713	chr12	16825185	16825186	rs17608340	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	12p12.3	MGST1, SLC15A5	rs17608340-A	0.226247	8E-6		0.798	[0.722 - 0.881]	Illumina [5397657] (imputed)	N
714	chr12	16911962	16911963	rs75665264	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Cholesterol esters in chylomicron and extremely large VLDL meal response (LMM)	11,410 individuals	NA	12p12.3		rs75665264-T	0.0359685	3E-9		0.176856	[0.13-0.23] unit increase	Illumina [7568622] (imputed)	N
714	chr12	16915993	16915994	rs10846422	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p12.3	intergenic	rs10846422-G	NR	6E-6		0.11267519	[0.062-0.163] unit decrease	Illumina [> 6200000] (imputed)	N
714	chr12	16921727	16921728	rs1011408	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p12.3	NR	rs1011408-?	NR	1E-9	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
714	chr12	16926653	16926654	rs2417612	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12p12.3	NCKAP5	rs2417612-?		5E-14				NR [7428630] (imputed)	N
714	chr12	16926653	16926654	rs2417612	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12p12.3	MOBP	rs2417612-?		1E-13				NR [7428630] (imputed)	N
714	chr12	16926653	16926654	rs2417612	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p12.3	NR	rs2417612-?		3E-8				NR [7428630] (imputed)	N
714	chr12	16933038	16933039	rs11057071	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	12p12.3	NR	rs11057071-A	0.56	4E-8		1.12	[1.05-1.20]	Illumina [9332516] (imputed)	N
714	chr12	16933339	16933340	rs11057072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.3		rs11057072-?	NR	6E-8				NR [~ 8900000] (imputed)	N
714	chr12	16956600	16956601	rs1386819	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p12.3		rs1386819-G	0.38	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
714	chr12	16983287	16983288	rs182978231	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12p12.3		rs182978231-?	NR	7E-6		0.7078409	[0.4-1.01] unit decrease	Illumina [9906551] (imputed)	N
714	chr12	16984746	16984747	rs11057081	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12p12.3	ADAMTS6, CENPK, PPWD1, TRIM23, TRAPPC13, CTC-534A2.2, SGTB, NLN	rs11057081-?		6E-12				NR [7428630] (imputed)	N
714	chr12	17012929	17012930	rs11057089	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12p12.3	NA	rs11057089-C	0.5655	5E-8	(Male)	1.055	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
714	chr12	17015266	17015267	rs12298405	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p12.3	LMO3	rs12298405-C	0.6698999999999999	2E-10		1.0236759		Affymetrix [11880941] (imputed)	N
715	chr12	17049911	17049912	rs146978549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p12.3	Intergenic	rs146978549-G	0.999	3E-6	(AA)	0.423	unit increase	Illumina [NR] (imputed)	N
715	chr12	17066768	17066769	rs1601409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12p12.3		rs1601409-?	NR	1E-8				NR [~ 8900000] (imputed)	N
715	chr12	17093316	17093317	rs1174510	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12p12.3		rs1174510-A	0.6244	5E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
715	chr12	17102091	17102092	rs61914396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.3		rs61914396-?	NR	8E-10				NR [~ 8900000] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	8E-10	(IGKC)	2.87	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	7E-21	(CTSS)	0.02217	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	5E-11	(ASAH1)	0.04005	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	4E-9	(LIPA)	0.03065	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	4E-13	(GPNMB)	0.08404	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17103676	17103677	rs74630977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs74630977-G	0.01045	2E-12	(IGHG1)	7.548	NR unit increase	Illumina [1671387] (imputed)	N
715	chr12	17141581	17141582	rs10772983	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12p12.3	NA	rs10772983-T	0.5394	6E-10		0.01	[0.0069-0.0131] unit decrease	NR [~ 27400000] (imputed)	N
715	chr12	17141581	17141582	rs10772983	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12p12.3	NR	rs10772983-C	NR	7E-7		0.012	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
715	chr12	17141581	17141582	rs10772983	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12p12.3	SKP1P2	rs10772983-T	0.57	3E-8		0.013	[0.0091-0.0169] unit decrease	Illumina [6108953] (imputed)	N
715	chr12	17157118	17157119	rs200950799	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	12p12.3	NR	rs200950799-T	0.011	2E-9		28.361	[19.13-37.59] unit decrease	Affymetrix [NR] (imputed)	N
715	chr12	17168385	17168386	rs117855597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.3	NR	rs117855597-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
716	chr12	17196831	17196832	rs7313220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p12.3		rs7313220-G	NR	5E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
716	chr12	17196831	17196832	rs7313220	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.3	NR	rs7313220-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
716	chr12	17196831	17196832	rs7313220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.3		rs7313220-?	NR	1E-10				NR [~ 8900000] (imputed)	N
716	chr12	17201701	17201702	rs17371630	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.3	MGST1	rs17371630-?	NR	4E-6	(DAG 34:2)	0.36499596	[0.21-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
716	chr12	17209444	17209445	rs10744145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p12.3		rs10744145-A	NR	4E-11		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
716	chr12	17212880	17212881	rs10744146	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p12.3	NA	rs10744146-A	0.5355	3E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
716	chr12	17275459	17275460	rs4237963	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	12p12.3	RPL7P40	rs4237963-A	0.7929	1E-9		1.0780509	NR	Affymetrix, Illumina [NR] (imputed)	N
717	chr12	17352289	17352290	rs9788058	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	12p12.3	SKP1P2, LINC02378	rs9788058-?		8E-6	(African American)	0.11375368	[0.064-0.164] unit decrease	Illumina [13620258] (imputed)	N
717	chr12	17362815	17362816	rs1513049	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		12p12.3	intergenic	rs1513049-?	NR	7E-6				Illumina [~ 2400000] (imputed)	N
717	chr12	17373738	17373739	rs9971637	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	12p12.3	NR	rs9971637-?	0.05	2E-6		1.48	[NR]	Illumina [292768]	N
717	chr12	17411819	17411820	rs11043377	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cytidine analogues (gemcitabine)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	12p12.3		rs11043377-?	NR	7E-7				Illumina [1510701]	N
717	chr12	17424511	17424512	rs1355696	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.3	FLJ22655	rs1355696-?	NR	4E-6	(DAG 36:2)	0.28829715	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
717	chr12	17425418	17425419	rs6486806	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to cytidine analogues (gemcitabine)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	12p12.3		rs6486806-?	NR	4E-8				Illumina [1510701]	N
718	chr12	17444732	17444733	rs2965667	25781442	Nan H	2015-03-17	JAMA	Association of aspirin and NSAID use with risk of colorectal cancer according to genetic variants.	Colorectal cancer (aspirin and/or NSAID use interaction)	8,634 European ancestry cases, 8,553 European ancestry controls	NA	12p12.3	MGST1, PIK3C2G	rs2965667-?	NR	5E-9				Affymetrix, Illumina [2700000] (imputed)	N
718	chr12	17474051	17474052	rs73055366	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.3	NR	rs73055366-A	0.01394	1E-8	(CTH)	0.8199	NR unit increase	Illumina [1671387] (imputed)	N
718	chr12	17494690	17494691	rs1581640	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	12p12.3	NR	rs1581640-A	0.365	2E-6		0.0172	[0.01-0.024] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
718	chr12	17523753	17523754	rs73057489	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour and bipolar disorder	398 European ancestry cases, 1,811 European ancestry controls	NA	12p12.3	intergenic	rs73057489-C	0.07	1E-6		2.0	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
719	chr12	17604222	17604223	rs181961151	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	12p12.3	NR	rs181961151-G	0.009	5E-6		3.06	[1.90-4.95]	Illumina [8672852] (imputed)	N
719	chr12	17628955	17628956	rs11043479	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in HBeAg-negative hepatitis B	161 Asian, European, African and other ancestry cases, 253 Asian, European, African and other ancestry controls	NA	12p12.3	intergenic	rs11043479-G	0.3278	2E-6		0.8571	[0.51-1.21] unit increase	Illumina [8102086] (imputed)	N
719	chr12	17639950	17639951	rs10219673	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	NR	rs10219673-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
719	chr12	17662234	17662235	rs1706631	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	12p12.3	intergenic	rs1706631-T	0.408	6E-6	(partial response - 2 weeks)	1.3548	[1.22-1.49]	Affymetrix, Illumina [1200000] (imputed)	N
719	chr12	17679312	17679313	rs2668375	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine without aura	27 Taiwanese ancestry cases, 142 Taiwanese ancestry controls	NA	12p12.3	intergenic	rs2668375-A	0.2007	8E-7		4.289	NR	Affymetrix [710525]	N
720	chr12	17728990	17728991	rs1186300	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	NR	rs1186300-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
720	chr12	17800606	17800607	rs2467146	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	12p12.3	LINC02378, MIR3974	rs2467146-A	0.67	6E-10		1.15	[1.10-1.20]	Illumina [9332516] (imputed)	N
721	chr12	17838359	17838360	rs140702452	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	12p12.3	NR	rs140702452-T	0.005	4E-6		4.0	[2.22-7.19]	Illumina [8672852] (imputed)	N
721	chr12	17883195	17883196	rs12301683	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.3	PIK3C2G	rs12301683-?	NR	9E-6	(cyclic adenosine monophosphate)	7.311808	[4.08-10.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
721	chr12	17940599	17940600	rs144553904	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	12p12.3	NR	rs144553904-C	0.005	7E-6		3.89	[2.15-7.05]	Illumina [8672852] (imputed)	N
722	chr12	17989311	17989312	rs12229978	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12p12.3		rs12229978-?	NR	2E-10				Affymetrix [NR] (imputed)	N
722	chr12	17991133	17991134	rs758954781	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12p12.3	Y_RNA	rs758954781-T	0.0013	6E-6		1.5054	[0.85-2.16] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr12	18001712	18001713	rs117824655	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p12.3	intergenic	rs117824655-A	NR	4E-6		0.3889731	[0.19-0.59] unit decrease	Illumina [> 6200000] (imputed)	N
723	chr12	18189927	18189928	rs74067914	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	12p12.3	intergenic	rs74067914-C	NR	7E-6	(AA)	0.646	unit increase	Illumina [at least 5086170] (imputed)	N
724	chr12	18315948	18315949	rs4340104	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.3	NR	rs4340104-?	NR	1E-38				Affymetrix [NR]	N
724	chr12	18335927	18335928	rs140471080	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	12p12.3		rs140471080-C	NR	4E-7		3.7778618	NR	Affymetrix [7846216] (imputed)	N
725	chr12	18367685	18367686	rs536112833	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	12p12.3	NR	rs536112833-A	0.0013	2E-8		0.22408608	[0.15-0.3] unit increase	Affymetrix [10613246] (imputed)	N
725	chr12	18380592	18380593	rs12296530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p12.3	Intergenic	rs12296530-T	0.7064	2E-10	(MTAG)	0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
725	chr12	18380592	18380593	rs12296530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p12.3	Intergenic	rs12296530-T	0.7067	5E-13	(MTAG)	0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
725	chr12	18385305	18385306	rs7968703	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12p12.3	NR	rs7968703-?		6E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
725	chr12	18412043	18412044	rs7304954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12p12.3	Intergenic	rs7304954-G	0.3159	1E-12		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
725	chr12	18438890	18438891	rs35016586	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12p12.3		rs35016586-T	0.04604	9E-6		2.481	[1.66-3.708]	Affymetrix [7975321] (imputed)	N
725	chr12	18443064	18443065	rs189555401	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Diastolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	12p12.3	PIK3C2G	rs189555401-T	NR	4E-8		1.82	[-0.434-4.074] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
725	chr12	18443064	18443065	rs189555401	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Diastolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	12p12.3	PIK3C2G	rs189555401-T	0.03	3E-7	(African)	2.613	[-0.0134-5.2394] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
725	chr12	18471545	18471546	rs75739461	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	12p12.3	PIK3C2G	rs75739461-?		1E-6	(model 2)	3.03	[1.93-4.76]	Illumina [29610185] (imputed)	N
726	chr12	18508251	18508252	rs11044045	24086445	Wang Q	2013-09-24	PLoS One	Genome-wide association analysis with gray matter volume as a quantitative phenotype in first-episode treatment-naive patients with schizophrenia.	Gray matter volume (schizophrenia interaction)	74 Han Chinese ancestry cases, 51 Han Chinese ancestry controls	NA	12p12.3	PIK3C2G	rs11044045-?	NR	3E-6		0.0445	[NR] unit decrease	NR [1983054] (imputed)	N
727	chr12	18677237	18677238	rs12315677	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	12p12.3	PIK3C2G	rs12315677-T	0.8399	4E-8		0.0387	[0.024-0.053] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
727	chr12	18716165	18716166	rs11044185	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	12p12.3	PIK3C2G	rs11044185-C	NR	7E-6		0.0658984	[0.037-0.095] unit decrease	Illumina [13519193] (imputed)	N
728	chr12	18779258	18779259	rs10841048	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	12p12.3	PIK3C2G	rs10841048-?	NR	6E-7		0.71	[0.44-0.98] unit increase	Illumina [1075436] (imputed)	N
728	chr12	18789006	18789007	rs621042	30066433	Jabbari E	2018-07-31	Ann Neurol	Variation at the TRIM11 locus modifies Progressive Supranuclear Palsy phenotype.	Non-Richardson's syndrome vs Richardson's syndrome in progressive supranuclear palsy	130 European ancestry non-Richardson's syndrome cases, 367 European ancestry Richardson's syndrome controls	NA	12p12.3	NR	rs621042-?	NR	8E-7				Illumina [6215948] (imputed)	N
730	chr12	19024557	19024558	rs12319113	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12p12.3	NR	rs12319113-?	NR	5E-7				Affymetrix [5486770] (imputed)	N
730	chr12	19024557	19024558	rs12319113	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	12p12.3	NR	rs12319113-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
730	chr12	19052179	19052180	rs1873386	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	12p12.3	CAPZA3	rs1873386-A		8E-6	(Conscientiousness)	0.03	[-0.0288-0.0888] unit decrease	Illumina [2053685] (imputed)	N
730	chr12	19052762	19052763	rs117595305	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12p12.3	CAPZA3, PLCZ1, PSMC1P9, PLEKHA5	rs117595305-T	NR	2E-6	(daytime napping duration, weekdays)	0.2291	[0.13-0.32] unit increase	Affymetrix [7141204] (imputed)	N
730	chr12	19056269	19056270	rs8181669	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12p12.3	NR	rs8181669-?	NR	6E-6		2.824	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
730	chr12	19056893	19056894	rs1490716	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12p12.3	NR	rs1490716-?	NR	6E-6		2.82	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
730	chr12	19105914	19105915	rs5012419	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12p12.3	NR	rs5012419-G	0.484425	3E-29		0.0247	[0.02-0.029] unit increase	Affymetrix [23037915] (imputed)	N
731	chr12	19149369	19149370	rs10743299	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12p12.3	PLEKHA5	rs10743299-G	0.374251	7E-10		0.0129716	[0.0088-0.0172] unit decrease	NR [16516521] (imputed)	N
731	chr12	19157395	19157396	rs2138062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.3		rs2138062-?	NR	2E-8				NR [~ 8900000] (imputed)	N
731	chr12	19173080	19173081	rs12297948	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12p12.3		rs12297948-G	0.332	9E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
731	chr12	19193530	19193531	rs11829119	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antiepileptic drugs in severe mental disorder (concentration drug ratio)	Up to 185 European ancestry cases	NA	12p12.3	PLEKHA5	rs11829119-C	0.063	1E-7		0.4991	[NR] unit decrease	Affymetrix [686595]	N
731	chr12	19207947	19207948	rs7976757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.3	NR	rs7976757-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
731	chr12	19207947	19207948	rs7976757	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p12.3	NA	rs7976757-T	0.1772	3E-11		0.015	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
731	chr12	19207947	19207948	rs7976757	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12p12.3	NA	rs7976757-T	0.1772	3E-11		0.015	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
731	chr12	19241156	19241157	rs883528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p12.3		rs883528-C	NR	1E-8		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
732	chr12	19287415	19287416	rs11044430	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.3	NR	rs11044430-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
732	chr12	19288507	19288508	rs10505836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p12.3		rs10505836-C	NR	5E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
732	chr12	19288507	19288508	rs10505836	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	12p12.3	PLEKHA5, SRSF11P1	rs10505836-?	0.16	7E-6	(adjusted for CYP2C19*2)	0.17	NR unit increase	Illumina [5009928] (imputed)	N
732	chr12	19288507	19288508	rs10505836	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12p12.3	PLEKHA5	rs10505836-A	0.139921	1E-9		0.0121361	[0.0082-0.016] unit decrease	Affymetrix [12370749]	N
732	chr12	19295168	19295169	rs7960282	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12p12.3		rs7960282-G	0.205	2E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
732	chr12	19381383	19381384	rs10770452	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12p12.3	PLEKHA5	rs10770452-T	0.178091	2E-8		0.0148708	[0.0096-0.0202] unit increase	NR [16516521] (imputed)	N
733	chr12	19402988	19402989	rs11044463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.3		rs11044463-?	NR	2E-11				NR [~ 8900000] (imputed)	N
733	chr12	19420063	19420064	rs17343287	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p12.3	PLEKHA5	rs17343287-?		7E-7				Illumina [4322238] (imputed)	N
733	chr12	19469077	19469078	rs10743315	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	12p12.3	PLEKHA5	rs10743315-A	NR	1E-8	(k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Lachnospiraceae|g__Lachnospiraceae_noname|s__Lachnospiraceae_bacterium_1_1_57FAA)	5.6769347	NR Z-score decrease	Illumina [8100000] (imputed)	N
733	chr12	19521638	19521639	rs143970033	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12p12.3	NR	rs143970033-?	NR	9E-8	(Native Hawaiian)	1.0142	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
734	chr12	19532769	19532770	rs147713846	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p12.3	PLEKHA5	rs147713846-A	0.0267483444122718	2E-6	(G_Collinsella_RNT)	0.390018	[0.23-0.55] unit increase	Illumina [7711310] (imputed)	N
734	chr12	19548935	19548936	rs73069098	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.3	intergenic	rs73069098-A	0.9308	4E-10		0.0234	[0.016-0.031] unit increase	Affymetrix [18391927] (imputed)	N
734	chr12	19554816	19554817	rs61912333	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12p12.3	AEBP2	rs61912333-C	0.4963	1E-11		0.1191	[0.085-0.154] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
734	chr12	19561542	19561543	rs7304081	31417607	Gazal S	2019-07-30	Front Genet	The Genetic Architecture of Chronic Mountain Sickness in Peru.	Chronic mountain sickness	166 Quechua cases, 146 Quechua controls	NA	12p12.3	PLEKHA5, AEBP2	rs7304081-A		5E-9		2.52	[1.85-3.48]	Affymetrix [1288199]	N
735	chr12	19767595	19767596	rs10743328	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	12p12.3	AEBP2	rs10743328-C	0.12	3E-6		1.43	[NR]	Illumina [NR] (imputed)	N
735	chr12	19779792	19779793	rs10841287	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p12.3	AEBP2	rs10841287-G	0.165	2E-6	(Sedentary&light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
736	chr12	19795905	19795906	rs11044734	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	12p12.3	intergenic	rs11044734-G	0.9	7E-6		0.112	unit increase	Illumina [~ 6300000] (imputed)	N
736	chr12	19801594	19801595	rs6486986	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12p12.3	AC090059.9	rs6486986-?	0.2253	8E-6	(SWM strategy)			Illumina [475971]	N
736	chr12	19801752	19801753	rs11044737	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	12p12.3	intergenic	rs11044737-G	0.9	8E-6		0.112	unit increase	Illumina [~ 6300000] (imputed)	N
736	chr12	19808911	19808912	rs10841302	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12p12.3	AEBP2	rs10841302-C	0.5464	2E-12		0.0167	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
736	chr12	19808911	19808912	rs10841302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.3		rs10841302-?	NR	3E-14				NR [~ 8900000] (imputed)	N
736	chr12	19830330	19830331	rs61918270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p12.3		rs61918270-?	NR	3E-8				NR [~ 8900000] (imputed)	N
736	chr12	19843410	19843410	rs113601380	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	12p12.3		rs113601380-T	NR	3E-7		1.96	[1.51-2.52]	Illumina [7582931] (imputed)	N
736	chr12	19846173	19846174	rs113572052	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p12.3	AEBP2	rs113572052-C	0.235	3E-7		0.0386	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr12	19866128	19866129	rs4762767	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12p12.3	AEBP2	rs4762767-G	NR	8E-6	(FEV1/FVC)	0.027	[0.015-0.039] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr12	19921074	19921075	rs4762743	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12p12.3	AEBP2	rs4762743-T	0.526095531778414	2E-6		0.0025784	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
737	chr12	19927799	19927800	rs2731620	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		12p12.3	intergenic	rs2731620-?	NR	7E-6		1.59	[NR]	Illumina [up to 810372] (imputed)	N
737	chr12	19951257	19951258	rs113160375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.3		rs113160375-?	NR	1E-9				NR [~ 8900000] (imputed)	N
737	chr12	19968450	19968451	rs150890706	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	12p12.2	AEBP2, LINC02398	rs150890706-T	0.06	6E-6	(male)	0.1247	[0.071-0.179] unit decrease	NR [NR] (imputed)	N
737	chr12	19979880	19979881	rs10841376	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	12p12.2	PDE3A	rs10841376-C	0.76	5E-9		0.319	[0.22-0.42] unit increase	Affymetrix [~ 9800000] (imputed)	N
737	chr12	19984778	19984779	rs1015291	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	intergenic	rs1015291-G	0.645	1E-7	(EA, initial)	0.243	[0.15-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
737	chr12	19992302	19992303	rs10841379	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12p12.2	AEBP2	rs10841379-A	0.315325	3E-8		0.00838674	[0.0054-0.0113] unit decrease	Affymetrix [12370749]	N
737	chr12	19996582	19996583	rs1815191	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (forehead)	6,254 Latin American individuals	NA	12p12.2		rs1815191-A	NR	2E-10	(women)	0.42	NR unit increase	Illumina [8703729] (imputed)	N
737	chr12	20007756	20007757	rs10841385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p12.2		rs10841385-?	NR	3E-13				NR [~ 8900000] (imputed)	N
738	chr12	20063967	20063968	rs10841397	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	12p12.2	intergenic	rs10841397-?	NR	9E-6	(SF6)			Affymetrix [5476100] (imputed)	N
738	chr12	20076619	20076620	rs12578433	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	12p12.2	RP11-405A12.2	rs12578433-G	0.24	1E-6		0.0327	[0.02-0.046] unit increase	Illumina [545605]	N
738	chr12	20081334	20081335	rs11044946	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p12.2	NR	rs11044946-T	NR	8E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
738	chr12	20091984	20091985	rs139711468	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12p12.2	PDE3A	rs139711468-A	0.0313345133067981	8E-7		0.0078033	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
738	chr12	20132972	20132973	rs36085972	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.2	NR	rs36085972-T	0.01045	2E-8	(TOMM70)	0.02476	NR unit increase	Illumina [1671387] (imputed)	N
738	chr12	20132972	20132973	rs36085972	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.2	NR	rs36085972-T	0.01045	1E-8	(FIS1)	0.03438	NR unit increase	Illumina [1671387] (imputed)	N
738	chr12	20156903	20156904	rs78535549	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	2,820 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	12p12.2		rs78535549-T	0.498208539	8E-9		0.853459	[0.808728807-0.900663237]	Illumina [8919992] (imputed)	N
738	chr12	20158159	20158160	rs11044977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12p12.2		rs11044977-T	NR	2E-11		0.0598	[0.042-0.077] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
738	chr12	20160745	20160746	rs4762911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12p12.2		rs4762911-A	NR	3E-23		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
738	chr12	20161167	20161168	rs2078339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12p12.2		rs2078339-?	NR	8E-13				NR [~ 8900000] (imputed)	N
738	chr12	20166267	20166268	rs7952935	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12p12.2	RP11-664H17.1	rs7952935-G	0.270584	4E-11		0.04471734	[0.031-0.058] unit decrease	Affymetrix [7288503] (imputed)	N
738	chr12	20172931	20172932	rs11044990	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p12.2	NR	rs11044990-A	0.5152	4E-12	(East Asian)	0.2749	[0.2-0.35] unit increase	Illumina [6200000] (imputed)	N
738	chr12	20173763	20173764	rs12579720	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p12.2	PDE3A	rs12579720-C	0.5058	1E-6	(Japanese)	0.2584	[0.15-0.36] unit decrease	Illumina [6200000] (imputed)	N
738	chr12	20173763	20173764	rs12579720	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12p12.2	PDE3A	rs12579720-C	0.5058	3E-6	(Japanese)	0.0606	[0.035-0.086] unit decrease	Illumina [6200000] (imputed)	N
738	chr12	20173763	20173764	rs12579720	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p12.2	PDE3A	rs12579720-C	0.5058	1E-7	(Japanese)	0.2549	[0.16-0.35] unit decrease	Illumina [6200000] (imputed)	N
738	chr12	20173763	20173764	rs12579720	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	PDE3A	rs12579720-G	0.773	5E-9	(EA, initial)	0.306	[0.2-0.41] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
738	chr12	20173763	20173764	rs12579720	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12p12.2	LOC100506393	rs12579720-C		5E-6		0.199	unit decrease	Affymetrix [at least 2696785] (imputed)	N
738	chr12	20173763	20173764	rs12579720	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12p12.2	LOC100506393	rs12579720-C		2E-19		0.24	unit decrease	Affymetrix [at least 2696785] (imputed)	N
738	chr12	20173763	20173764	rs12579720	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12p12.2	PDE3A	rs12579720-C	0.316614178	2E-16		0.3193904	[0.24-0.4] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
738	chr12	20174363	20174364	rs11044991	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	12p12.2	NR	rs11044991-A	0.395	2E-8		0.128	[0.083-0.173] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
738	chr12	20174363	20174364	rs11044991	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p12.2	NR	rs11044991-A	0.4645	5E-10	(East Asian)	0.2752	[0.19-0.36] unit decrease	Illumina [6200000] (imputed)	N
738	chr12	20183940	20183941	rs10770608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12p12.2		rs10770608-A	NR	3E-13		0.0379	[0.028-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
738	chr12	20184027	20184028	rs12231983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12p12.2		rs12231983-G	NR	1E-8		0.0384	[0.025-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
738	chr12	20184145	20184146	rs11045000	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	12p12.2	LOC100506393	rs11045000-A	0.46	3E-11		1.28	[1.19-1.38]	Illumina [5163786] (imputed)	N
739	chr12	20188090	20188091	rs2417823	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12p12.2	LOC100506393	rs2417823-C	0.34	4E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
739	chr12	20190629	20190630	rs4306343	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12p12.2	LOC100506393	rs4306343-A	0.34	3E-31	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
739	chr12	20192971	20192972	rs3752728	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12p12.2	PDE3A	rs3752728-?	NR	2E-11				Affymetrix, Illumina [18800000] (imputed)	N
739	chr12	20192971	20192972	rs3752728	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12p12.2	PDE3A	rs3752728-?		1E-35				Affymetrix, Illumina [18800000] (imputed)	N
739	chr12	20192971	20192972	rs3752728	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12p12.2	PDE3A	rs3752728-A	0.737	4E-7		0.331	[0.2-0.46] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
739	chr12	20192971	20192972	rs3752728	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12p12.2	PDE3A	rs3752728-A	0.737	2E-15		0.319	[0.24-0.4] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
739	chr12	20196844	20196845	rs12829468	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12p12.2	LOC100506393	rs12829468-A	0.28	7E-25	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
739	chr12	20199961	20199962	rs10743353	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12p12.2	LOC100506393	rs10743353-T	0.71	6E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
739	chr12	20212659	20212660	rs78018265	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12p12.2	NR	rs78018265-A	0.1042	4E-8	(East Asian)	0.6757	[0.44-0.92] unit increase	Illumina [6200000] (imputed)	N
739	chr12	20218802	20218803	rs4529948	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	12p12.2	RP11-664H17.1	rs4529948-T	0.18	6E-6	(female)	1.61	[0.92-2.3] unit increase	Illumina [6380737] (imputed)	N
739	chr12	20218802	20218803	rs4529948	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	12p12.2	RP11-664H17.1	rs4529948-T	0.18	2E-6		1.32	[0.77-1.87] unit increase	Illumina [6380737] (imputed)	N
739	chr12	20220032	20220033	rs10841443	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12p12.2	PDE3A	rs10841443-G	0.649365	9E-12		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
739	chr12	20220032	20220033	rs10841443	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	12p12.2	LINC02398	rs10841443-G	0.658908	2E-8		1.07	[1.04-1.09]	NR [10903881] (imputed)	N
739	chr12	20220032	20220033	rs10841443	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12p12.2	LINC02398	rs10841443-?	NR	7E-17		0.0429913	[0.033-0.053] unit increase	Illumina [4804024] (imputed)	N
739	chr12	20220032	20220033	rs10841443	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Coronary atherosclerosis (time to event)	19,079 British ancestry cases, 263,792 British ancestry controls	NA	12p12.2	LINC02398	rs10841443-?	NR	6E-8				NR [~ 24000000] (imputed)	N
739	chr12	20220032	20220033	rs10841443	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12p12.2	LINC02398	rs10841443-G	0.65	1E-8		1.05	[1.04-1.06]	Illumina [5167567] (imputed)	N
739	chr12	20220032	20220033	rs10841443	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12p12.2	LOC100506393	rs10841443-C	0.3409	3E-14		0.046	[0.034-0.058] unit decrease	Affymetrix [at least 7947838] (imputed)	N
739	chr12	20220032	20220033	rs10841443	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12p12.2	LOC100506393	rs10841443-C	0.34	8E-14		0.051	[0.038-0.064] unit decrease	NR [8041861] (imputed)	N
739	chr12	20220032	20220033	rs10841443	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12p12.2	LOC100506393	rs10841443-C	0.34	8E-14		0.051	[0.037-0.065] unit decrease	Affymetrix [7947838] (imputed)	N
739	chr12	20220032	20220033	rs10841443	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	12p12.2	RP11-664H17.1	rs10841443-G	0.67	2E-8		1.05	[1.03-1.07]	Affymetrix [9061845] (imputed)	N
739	chr12	20230638	20230639	rs10770612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p12.2		rs10770612-G	NR	7E-25		0.0224	[0.018-0.027] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
739	chr12	20230638	20230639	rs10770612	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.2	LOC100506393	rs10770612-G	0.7997	2E-15		0.2502	[0.19-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
739	chr12	20230638	20230639	rs10770612	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p12.2	PDE3A	rs10770612-A	0.8	7E-15		0.313	[0.23-0.39] unit increase	Affymetrix [~ 9800000] (imputed)	N
739	chr12	20230638	20230639	rs10770612	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	12p12.2	PDE3A	rs10770612-G	0.19	2E-8		0.03	[0.02-0.04] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
739	chr12	20231526	20231526	rs71039916	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Coronary heart disease x type 2 diabetes interaction	56,285 European ancestry coronary heart disease cases, 140,945 European ancestry controls	NA	12p12.2	PDE3A	rs71039916-T	0.034	8E-9				Affymetrix [at least 723305] (imputed)	N
739	chr12	20278429	20278430	rs2303658	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p12.2	PDE3A	rs2303658-A	0.319920217	2E-6		0.1367	[0.08-0.193] unit increase	Affymetrix [~ 9800000] (imputed)	N
739	chr12	20297975	20297976	rs11045079	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12p12.2	intergenic	rs11045079-?	0.13590000000000002	2E-9		0.97	[0.95-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
740	chr12	20349631	20349631	rs534298147	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.2	intergenic	rs534298147-ATT	0.7252	8E-12		0.2361	[0.17-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	2E-14				Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	7E-14				Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?		4E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	2E-18				Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	2E-17	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	1E-17				Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20354506	20354507	rs73073686	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12p12.2	SLCO1C1, SLCO1B3, SLCO1B7, SLCO1B1	rs73073686-?	NR	1E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
740	chr12	20360327	20360328	rs73073694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12p12.2		rs73073694-?	NR	2E-9				NR [~ 8900000] (imputed)	N
740	chr12	20368268	20368269	rs60691990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12p12.2		rs60691990-C	NR	2E-15		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
740	chr12	20368268	20368269	rs60691990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p12.2		rs60691990-?	NR	2E-29				NR [~ 8900000] (imputed)	N
740	chr12	20368268	20368269	rs60691990	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.2	intergenic	rs60691990-C	0.6921	1E-21		0.3528	[0.28-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
740	chr12	20368268	20368269	rs60691990	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p12.2	PDE3A	rs60691990-T	0.65	5E-22		0.283	[0.22-0.34] unit increase	Affymetrix [~ 9800000] (imputed)	N
740	chr12	20368320	20368321	rs76702537	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	12p12.2	LINC02468, PDE3A47	rs76702537-?	NR	1E-8				NR [~ 24000000] (imputed)	N
740	chr12	20373540	20373541	rs73075659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12p12.2		rs73075659-G	NR	2E-17		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
740	chr12	20373540	20373541	rs73075659	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12p12.2	CTC-465D4.1	rs73075659-G	0.343772	3E-11		0.042514514	[0.03-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
740	chr12	20373540	20373541	rs73075659	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	LOC100506393, PDE3A	rs73075659-G	0.311	2E-8	(EA, initial)	0.445	[0.29-0.6] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
740	chr12	20373540	20373541	rs73075659	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	LOC100506393, PDE3A	rs73075659-G	0.311	2E-8	(EA, initial)	0.445	[0.29-0.6] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
740	chr12	20373540	20373541	rs73075659	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	LOC100506393, PDE3A	rs73075659-G	0.311	1E-14		0.357	[0.27-0.45] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
740	chr12	20373540	20373541	rs73075659	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12p12.2	LOC100506393, PDE3A	rs73075659-G	0.311	2E-7	(EA, initial)	0.251	[0.15-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
740	chr12	20378910	20378911	rs10841473	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12p12.2		rs10841473-G	NR	4E-7		5.04795	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20403945	20403946	rs274966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.2		rs274966-?	NR	6E-17				NR [~ 8900000] (imputed)	N
740	chr12	20429030	20429031	rs118111960	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs118111960-A	0.99	2E-9				NR [NR] (imputed)	N
740	chr12	20429030	20429031	rs118111960	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs118111960-A	0.99	2E-10				NR [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	6E-6		0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	6E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	3E-11				Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	8E-14				Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	6E-8		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
740	chr12	20442784	20442785	rs78459082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12p12.2	LOC100506393, PDE3A	rs78459082-C	NR	1E-9		0.008428	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
741	chr12	20463525	20463526	rs11045163	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12p12.2	PDE3A	rs11045163-A	0.594	5E-9	(Trans-ethnic initial)	0.0217	[0.015-0.029] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	5E-10		0.0305052	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	9E-10		0.0280322	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	3E-8		0.0259807	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	2E-9		0.0275193	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	1E-9		0.0278135	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	2E-8		0.0260772	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	9E-10		0.0280092	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	5E-9		0.0273237	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	1E-10		0.0295948	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	2E-10		0.0292309	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12p12.2		rs11045171-A	0.802571	1E-8		0.0262102	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
741	chr12	20470198	20470199	rs11045171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p12.2	NR	rs11045171-G	0.197589	5E-10		0.017375018	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr12	20470198	20470199	rs11045171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p12.2	NR	rs11045171-G	0.198127	9E-11		0.015467	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
741	chr12	20470198	20470199	rs11045171	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p12.2	PDE3A	rs11045171-A	0.802397	5E-32		0.0283371	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
741	chr12	20470198	20470199	rs11045171	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p12.2	NR	rs11045171-G	0.19765500000000003	1E-14		0.00814204	[0.0061-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
741	chr12	20470198	20470199	rs11045171	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p12.2	NR	rs11045171-G	0.19765500000000003	1E-6		0.00598142	[0.0037-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
741	chr12	20470198	20470199	rs11045171	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p12.2	intergenic	rs11045171-A	0.8048	2E-18		0.0318	[0.025-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
741	chr12	20470220	20470221	rs11045172	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	12p12.2		rs11045172-C	0.2	9E-25		0.025	mmol/L decrease	NR [NR] (imputed)	N
741	chr12	20470220	20470221	rs11045172	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	12p12.2		rs11045172-C	0.2	4E-6		0.011	nmol/L increase	NR [NR] (imputed)	N
741	chr12	20470220	20470221	rs11045172	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12p12.2		rs11045172-C	0.2	9E-21				NR [NR] (imputed)	N
741	chr12	20470220	20470221	rs11045172	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	12p12.2		rs11045172-C	0.2	8E-32		0.027	mmol/L increase	NR [NR] (imputed)	N
741	chr12	20470220	20470221	rs11045172	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12p12.2		rs11045172-C	0.2	5E-9		0.011	% increase	NR [NR] (imputed)	N
741	chr12	20470220	20470221	rs11045172	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12p12.2	PDE3A	rs11045172-A	0.80209	3E-19		0.0222132	[0.017-0.027] unit decrease	Affymetrix [NR] (imputed)	N
741	chr12	20472201	20472202	rs10841486	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12p12.2	PDE3A	rs10841486-T	0.781033	2E-7		0.405219	[0.25-0.56] unit increase	Affymetrix [~ 7800000] (imputed)	N
741	chr12	20472201	20472202	rs10841486	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12p12.2	PDE3A	rs10841486-C	0.22	3E-9		0.2382	[0.16-0.32] unit decrease	Affymetrix [19941912] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	3E-11		0.0263001	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	3E-10		0.0250673	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	6E-11		0.0256281	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569822	2E-10		0.0244431	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	4E-8		0.0217116	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	7E-9		0.0229133	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	3E-10		0.0234696	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	3E-8		0.0219806	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	3E-8		0.0205362	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	2E-8		0.0219431	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	5E-9		0.0235245	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	4E-9		0.023296	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	2E-8		0.0215245	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	1E-10		0.0241322	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	2E-10		0.0251061	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	5E-9		0.0228701	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	5E-8		0.0205521	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12p12.2		rs7134375-C	0.569789	4E-8		0.021099	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
741	chr12	20473757	20473758	rs7134375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs7134375-A	NR	1E-9		0.0179333	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
741	chr12	20473757	20473758	rs7134375	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12p12.2	PDE3A	rs7134375-A	0.4016	8E-11				Affymetrix, Illumina [2331072] (imputed)	N
741	chr12	20473757	20473758	rs7134375	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p12.2	PDE3A	rs7134375-C	0.56883	1E-17		0.0171837	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
741	chr12	20473757	20473758	rs7134375	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	12p12.2	PDE3A	rs7134375-A	0.410323819941245	9E-19		0.04986544	unit increase	Illumina [265780]	N
741	chr12	20473757	20473758	rs7134375	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12p12.2		rs7134375-A	0.4375	4E-6	(EA)	0.0061	[0.0036-0.0086] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
741	chr12	20473757	20473758	rs7134375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs7134375-C	NR	1E-11		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20473757	20473758	rs7134375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs7134375-C	0.566	8E-11	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20473757	20473758	rs7134375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs7134375-C	NR	7E-14		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20473757	20473758	rs7134375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs7134375-C	0.566	2E-12	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20473757	20473758	rs7134375	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12p12.2	PDE3A	rs7134375-A	0.43	1E-8		0.021	[NR] unit increase	NR [NR] (imputed)	N
741	chr12	20473757	20473758	rs7134375	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12p12.2	PDE3A	rs7134375-A	0.42	4E-8		0.4	[0.24-0.56] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
741	chr12	20474705	20474706	rs79719909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p12.2		rs79719909-G	NR	1E-23		0.0263	[0.021-0.031] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
741	chr12	20474705	20474706	rs79719909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12p12.2		rs79719909-G	NR	2E-29		0.0299	[0.025-0.035] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
741	chr12	20474705	20474706	rs79719909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs79719909-G	NR	4E-9		0.0208159	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
741	chr12	20474705	20474706	rs79719909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs79719909-G	NR	4E-9		0.0207988	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
741	chr12	20474705	20474706	rs79719909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs79719909-G	NR	4E-9		0.021637	[0.014-0.029] unit increase	Affymetrix [321788] (imputed)	N
741	chr12	20474705	20474706	rs79719909	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	12p12.2	NR	rs79719909-A	0.8073	3E-8				Affymetrix, Illumina [at least 2500000] (imputed)	N
741	chr12	20474705	20474706	rs79719909	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs79719909-A	NR	3E-17		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20474705	20474706	rs79719909	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs79719909-A	0.797	2E-16	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20474705	20474706	rs79719909	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs79719909-A	NR	1E-17		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20474705	20474706	rs79719909	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.2	NR	rs79719909-A	0.797	6E-17	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
741	chr12	20481942	20481943	rs71463090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12p12.2	RP11-284H19.1	rs71463090-T	NR	1E-8		0.0190627	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
741	chr12	20498035	20498036	rs7955516	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12p12.2	PDE3A	rs7955516-C	0.40	4E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [NR] (imputed)	N
741	chr12	20508586	20508587	rs1025949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p12.2	RP11-284H19.1	rs1025949-A	NR	3E-9		0.0192562	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
741	chr12	20508812	20508813	rs1025950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs1025950-T	NR	8E-9		0.0169012	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
741	chr12	20508812	20508813	rs1025950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs1025950-T	NR	2E-10		0.0180751	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
741	chr12	20508812	20508813	rs1025950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p12.2	RP11-284H19.1	rs1025950-T	NR	7E-11		0.0200522	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
741	chr12	20511681	20511682	rs7965852	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	12p12.2	PDE3A	rs7965852-?	NR	3E-9		0.007145	[0.0031-0.0112] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
741	chr12	20514818	20514819	rs10743364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.2	RP11-284H19.1	rs10743364-A	NR	4E-9		0.0176247	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
741	chr12	20521653	20521654	rs10841496	19478329	Aston KI	2009-05-28	J Androl	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	12p12.2	PDE3A	rs10841496-?	0.58	5E-7	(azoospermia)			Illumina [314776]	N
741	chr12	20531018	20531019	rs11045197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p12.2		rs11045197-T	0.541784	7E-10		0.0124333	[0.0085-0.0164] unit increase	Illumina [13479295] (imputed)	N
741	chr12	20531640	20531641	rs1348581	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12p12.2	PDE3A	rs1348581-T	0.8004	4E-12		0.574	[0.41-0.74] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
741	chr12	20531755	20531756	rs1348582	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	12p12.2	PDE3A	rs1348582-G	0.18	1E-6		0.2	[0.12-0.28] unit increase	Illumina [~ 318327]	N
741	chr12	20536370	20536371	rs4326884	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	12p12.2	PDE3A	rs4326884-?		8E-7				NR [~ 3000000] (imputed)	N
741	chr12	20539651	20539652	rs111593723	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	12p12.2	NR	rs111593723-?	NR	4E-6		0.138121	[0.079-0.197] unit decrease	NR [13958389] (imputed)	N
741	chr12	20540660	20540661	rs141449585	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	12p12.2		rs141449585-T	0.976079	2E-6		0.0268233	[0.0099-0.0437] unit increase	Illumina [7666802] (imputed)	N
741	chr12	20540699	20540700	rs7133921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.2		rs7133921-?	NR	2E-26				NR [~ 8900000] (imputed)	N
741	chr12	20544360	20544361	rs10770646	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12p12.2	PDE3A	rs10770646-T	0.79	6E-11		0.53	[0.37-0.69] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
741	chr12	20556593	20556594	rs10841508	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12p12.2	NR	rs10841508-T	0.571671	2E-8		0.0550627	[0.036-0.074] unit increase	Affymetrix [21375087] (imputed)	N
741	chr12	20566390	20566391	rs7310698	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p12.2	NR	rs7310698-?	NR	7E-6	(female)	0.11731	[0.066-0.168] unit increase	Affymetrix [7794483] (imputed)	N
741	chr12	20566390	20566391	rs7310698	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12p12.2	NR	rs7310698-?	NR	2E-9		0.14404	[0.097-0.191] unit increase	Affymetrix [7794483] (imputed)	N
741	chr12	20573162	20573163	rs10770654	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.2	PDE3A	rs10770654-A	0.3098	6E-32		0.0239	[0.02-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
741	chr12	20573235	20573236	rs10841515	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12p12.2	NR	rs10841515-A	0.688686	5E-11		0.0687166	[0.048-0.089] unit increase	Affymetrix [21375087] (imputed)	N
741	chr12	20576873	20576874	rs12369136	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	12p12.2	PDE3A	rs12369136-G	0.039989151	3E-6		1.2264934	[1.125512775-1.336533821]	Illumina [10439017] (imputed)	N
741	chr12	20577592	20577593	rs7304841	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	12p12.2	PDE3A	rs7304841-?	NR	2E-7				NR [~ 8000000] (imputed)	N
741	chr12	20577592	20577593	rs7304841	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	12p12.2	PDE3A	rs7304841-?	NR	5E-8				NR [~ 8000000] (imputed)	N
742	chr12	20578880	20578881	rs11045235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p12.2	PDE3A	rs11045235-G	0.218461	8E-9		0.015501432	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
742	chr12	20578880	20578881	rs11045235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p12.2		rs11045235-?	NR	3E-8				NR [~ 8900000] (imputed)	N
742	chr12	20579391	20579392	rs7488780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p12.2		rs7488780-C	NR	6E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
742	chr12	20579391	20579392	rs7488780	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12p12.2	PDE3A	rs7488780-G	0.8	1E-8		5.68	z-score increase	Affymetrix [4314223] (imputed)	N
742	chr12	20579391	20579392	rs7488780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.2	NR	rs7488780-C	0.168602	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
742	chr12	20579391	20579392	rs7488780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p12.2	NR	rs7488780-C	0.204958	1E-12		0.016268	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
742	chr12	20579391	20579392	rs7488780	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p12.2	PDE3A	rs7488780-G	0.795737	9E-10		0.0145424	[0.0099-0.0192] unit decrease	Affymetrix [NR] (imputed)	N
742	chr12	20579391	20579392	rs7488780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p12.2		rs7488780-?	NR	2E-12				NR [~ 8900000] (imputed)	N
742	chr12	20579693	20579694	rs11045239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12p12.2		rs11045239-A	NR	1E-11		0.0604	[0.043-0.078] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
742	chr12	20581338	20581339	rs7298820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	12p12.2		rs7298820-T	NR	9E-10		0.1116	[0.076-0.147] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
742	chr12	20581338	20581339	rs7298820	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p12.2	NR	rs7298820-T	0.20546399999999998	1E-23		0.015038	[0.012-0.018] unit increase	Affymetrix [16585854] (imputed)	N
742	chr12	20581338	20581339	rs7298820	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p12.2	NR	rs7298820-T	0.20546399999999998	1E-14		0.0139022	[0.01-0.017] unit increase	Affymetrix [16585866] (imputed)	N
742	chr12	20582639	20582640	rs66720652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs66720652-A	0.800792	1E-8		0.0276895	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582639	20582640	rs66720652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs66720652-A	0.800792	7E-9		0.026954	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582650	20582651	rs12369443	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs12369443-A	0.800527	5E-9		0.0273422	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582650	20582651	rs12369443	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs12369443-A	0.800527	9E-9		0.026841	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582650	20582651	rs12369443	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12p12.2		rs12369443-A	0.800527	3E-9		0.0276927	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582650	20582651	rs12369443	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12p12.2		rs12369443-A	0.800527	5E-9		0.0274905	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
742	chr12	20582650	20582651	rs12369443	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12p12.2	PDE3A	rs12369443-A	0.7798	7E-6		0.0104	[0.0059-0.0149] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
742	chr12	20582650	20582651	rs12369443	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12p12.2	NR	rs12369443-G	0.199	3E-9		0.001637	[0.0011-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
742	chr12	20582650	20582651	rs12369443	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	12p12.2	NR	rs12369443-A		1E-6				Illumina [458865]	N
742	chr12	20587216	20587217	rs10841522	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12p12.2	NR	rs10841522-A	0.437973	1E-8		0.0551798	[0.036-0.075] unit increase	Affymetrix [21375087] (imputed)	N
742	chr12	20588381	20588382	rs6487088	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12p12.2	NR	rs6487088-T	0.798154	1E-9		0.072462	[0.048-0.097] unit increase	Affymetrix [21375087] (imputed)	N
742	chr12	20591331	20591332	rs7134150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12p12.2		rs7134150-G	0.931223	4E-8		0.042722	[0.028-0.058] unit decrease	NR [11722792] (imputed)	N
742	chr12	20591331	20591332	rs7134150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12p12.2		rs7134150-G	0.931223	3E-8		0.0427804	[0.028-0.058] unit increase	NR [11722792] (imputed)	N
742	chr12	20591331	20591332	rs7134150	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p12.2	NR	rs7134150-G	0.9011	3E-10		0.0443	[0.031-0.058] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
742	chr12	20592200	20592201	rs7485334	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p12.2		rs7485334-C	0.29923	4E-7		0.037078	[0.023-0.051] unit decrease	Affymetrix [15580782] (imputed)	N
742	chr12	20592200	20592201	rs7485334	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12p12.2		rs7485334-C	0.29923	1E-7		0.039181	[0.025-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
742	chr12	20592623	20592624	rs11045247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12p12.2	NR	rs11045247-A	NR	1E-10		0.0304	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
742	chr12	20595534	20595535	rs4762755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p12.2	NR	rs4762755-T	0.5698639999999999	5E-11		0.00737297	[0.0051-0.0097] unit increase	Affymetrix [16582621] (imputed)	N
742	chr12	20595534	20595535	rs4762755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p12.2	NR	rs4762755-T	0.5698639999999999	1E-9		0.0074216	[0.005-0.0099] unit increase	Affymetrix [16582614] (imputed)	N
742	chr12	20597576	20597577	rs4762756	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12p12.2	PDE3A	rs4762756-T	0.264372	5E-10		0.0140001	[0.0096-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
742	chr12	20598565	20598566	rs10841529	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12p12.2	PDE3A	rs10841529-?	NR	2E-6		0.309	[0.17-0.45] unit decrease	Illumina [at least 13000000] (imputed)	N
742	chr12	20599111	20599112	rs10841530	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12p12.2	PDE3A	rs10841530-G	0.56	6E-7	(drinks/week)	0.155	[0.098-0.212] unit increase	Affymetrix [2500000] (imputed)	N
742	chr12	20619704	20619705	rs188931348	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs188931348-A	0.01	1E-8				NR [NR] (imputed)	N
742	chr12	20619704	20619705	rs188931348	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs188931348-A	0.01	1E-7		0.59	[0.18-1] unit increase	NR [NR] (imputed)	N
742	chr12	20619704	20619705	rs188931348	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs188931348-A	0.01	1E-8				NR [NR] (imputed)	N
742	chr12	20619704	20619705	rs188931348	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	12p12.2		rs188931348-A	0.01	6E-6		1.55	[0.88-2.22] unit decrease	NR [NR] (imputed)	N
742	chr12	20635167	20635168	rs56186852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.2		rs56186852-?	NR	3E-10				NR [~ 8900000] (imputed)	N
742	chr12	20638726	20638726	rs143490573	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12p12.2	PDE3A	rs143490573-TTG	NR	4E-6		1.0276302	[0.6-1.46] unit decrease	Illumina [> 6200000] (imputed)	N
742	chr12	20668795	20668796	rs7953905	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p12.2	PDE3A	rs7953905-?	NR	5E-9		0.04015262	[0.027-0.054] unit decrease	Illumina [27896057] (imputed)	N
742	chr12	20674834	20674835	rs113595563	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p12.2	NR	rs113595563-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
742	chr12	20676866	20676867	rs11045293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.2		rs11045293-?	NR	3E-8				NR [~ 8900000] (imputed)	N
742	chr12	20677957	20677958	rs7955819	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	12p12.2	PDE3A	rs7955819-C	0.232345940227453	3E-8		0.009529395	unit increase	NR [9276018] (imputed)	N
743	chr12	20720706	20720707	rs7971334	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12p12.2	PDE3A	rs7971334-T	0.3065	1E-8		5.724	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
743	chr12	20726030	20726031	rs61415458	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.2	PDE3A	rs61415458-T	0.8668	1E-15		0.0223	[0.017-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
743	chr12	20736761	20736762	rs6487108	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p12.2	PDE3A	rs6487108-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
743	chr12	20754153	20754154	rs73080726	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p12.2	PDE3A	rs73080726-T	0.101	2E-11		0.1914	[0.14-0.25] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
743	chr12	20758612	20758613	rs11611208	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12p12.2	SLCO1B3, PDE3A, SLCO1C1	rs11611208-A	0.06	2E-6		11.4	[6.7-16.1] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
743	chr12	20769269	20769270	rs141325069	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	12p12.2		rs141325069-?	NR	2E-9		0.104478	[0.07-0.139] unit increase	NR [9800000] (imputed)	N
743	chr12	20769269	20769270	rs141325069	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p12.2		rs141325069-A	0.0031	6E-11		1.2991543	[0.9-1.7] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
743	chr12	20769269	20769270	rs141325069	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	12p12.2		rs141325069-A	0.0031	4E-8		5.48173	z score increase	Affymetrix, Illumina [239843] (imputed)	N
743	chr12	20770577	20770578	rs10770678	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	12p12.2	PDE3A	rs10770678-A	0.01	6E-6	(female)	0.211	[0.12-0.3] unit decrease	Illumina [6380737] (imputed)	N
743	chr12	20770577	20770578	rs10770678	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	12p12.2	PDE3A	rs10770678-A	0.01	6E-6		0.157	[0.088-0.226] unit decrease	Illumina [6380737] (imputed)	N
743	chr12	20774641	20774642	rs117384395	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	12p12.2		rs117384395-?	NR	9E-6		0.202	unit decrease	Illumina [NR] (imputed)	N
743	chr12	20775889	20775890	rs11045338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs11045338-C	NR	5E-13		0.0184	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr12	20775889	20775890	rs11045338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs11045338-C	NR	5E-13		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr12	20777161	20777162	rs73080767	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.2	PDE3A	rs73080767-T	0.0704	2E-8		0.2227	[0.15-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
743	chr12	20782115	20782116	rs11045347	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p12.2	NR	rs11045347-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
743	chr12	20782115	20782116	rs11045347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p12.2	PDE3A	rs11045347-T	0.3437	5E-6		0.0326	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr12	20786821	20786822	rs10841580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p12.2		rs10841580-?	NR	6E-10				NR [~ 8900000] (imputed)	N
743	chr12	20786821	20786822	rs10841580	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p12.2	NR	rs10841580-T	0.338512	2E-16		0.0272858	[0.021-0.034] unit decrease	NR [19129689] (imputed)	N
743	chr12	20795572	20795573	rs112767900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs112767900-A	NR	2E-9		0.0366	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr12	20795572	20795573	rs112767900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs112767900-A	NR	1E-11		0.0448	[0.032-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr12	20810510	20810511	rs10770687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.2	PDE3A	rs10770687-C	NR	4E-9		0.0175137	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
743	chr12	20829519	20829520	rs10841593	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p12.2	PDE3A	rs10841593-A	0.5778	2E-8		0.0387	[0.025-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr12	20832320	20832321	rs10770699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p12.2		rs10770699-G	NR	2E-25		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
743	chr12	20832341	20832342	rs10770700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.2		rs10770700-?	NR	4E-37				NR [~ 8900000] (imputed)	N
744	chr12	20840720	20840721	rs11045388	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p12.2	NR	rs11045388-A	0.3394	3E-8				NR [9056863] (imputed)	N
744	chr12	20840838	20840839	rs11045392	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	12p12.2	PDE3A	rs11045392-?	NR	2E-6	(EULAR response)	3.3	[1.90-5.60]	Illumina [486450]	N
744	chr12	20857466	20857467	rs10770705	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p12.2	NR	rs10770705-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
744	chr12	20857466	20857467	rs10770705	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12p12.2	SLCO1C1	rs10770705-A	0.338	2E-21		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
744	chr12	20857466	20857467	rs10770705	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p12.2	SLCO1C1	rs10770705-A	0.33	8E-18		0.033	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
744	chr12	20860092	20860093	rs3794271	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	12p12.2	SLCO1C1	rs3794271-?	NR	4E-6	(EULAR response)	3.2	[1.90-5.50]	Illumina [486450]	N
744	chr12	20862938	20862939	rs11045399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs11045399-A	NR	4E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20862938	20862939	rs11045399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs11045399-A	NR	3E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20864341	20864342	rs36010656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs36010656-A	NR	3E-13		0.0392	[0.029-0.05] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20864341	20864342	rs36010656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs36010656-A	NR	2E-14		0.0442	[0.033-0.056] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20876992	20876993	rs78598750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs78598750-T	NR	2E-27		0.0678	[0.056-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20876992	20876993	rs78598750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs78598750-T	NR	9E-24		0.0685	[0.055-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20881761	20881762	rs11045417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs11045417-G	NR	7E-33		0.0299	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20881761	20881762	rs11045417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs11045417-G	NR	5E-25		0.028	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20889085	20889086	rs10734708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs10734708-T	NR	5E-60		0.067	[0.059-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20889085	20889086	rs10734708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs10734708-T	NR	7E-30		0.05	[0.041-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20889185	20889186	rs117474805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs117474805-A	NR	1E-23		0.0636	[0.051-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20889185	20889186	rs117474805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs117474805-A	NR	1E-24		0.0708	[0.057-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr12	20900838	20900839	rs75151534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs75151534-T	NR	7E-41		0.0565	[0.048-0.065] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20900838	20900839	rs75151534	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs75151534-T	NR	6E-24		0.0458	[0.037-0.055] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20902533	20902534	rs12227204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs12227204-C	NR	5E-13		0.0537	[0.039-0.068] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20902533	20902534	rs12227204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs12227204-C	NR	4E-9		0.0469	[0.031-0.063] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20915064	20915065	rs10841618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.2	NR	rs10841618-C	NR	2E-12		0.0279	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20926181	20926182	rs11502414	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	12p12.2	Intergenic	rs11502414-?		3E-6	(male)	0.546	[0.32-0.77] unit decrease	NR [~ 5500000] (imputed)	N
744	chr12	20944906	20944907	rs145902143	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	12p12.2	NR	rs145902143-G	NR	1E-6		0.2838	[0.17-0.4] SD units increase	NR [10700000] (imputed)	N
744	chr12	20965320	20965328	rs138932594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p12.2		rs138932594-A	NR	2E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
744	chr12	20965817	20965818	rs143371462	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	12p12.2	SLCO1B3	rs143371462-G	0.02	7E-7		0.64	[0.39-0.89] unit decrease	Illumina [5918868] (imputed)	N
744	chr12	20971230	20971231	rs117451511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs117451511-C	NR	1E-41		0.0785	[0.067-0.09] unit increase	Affymetrix [9000000] (imputed)	N
744	chr12	20971230	20971231	rs117451511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs117451511-C	NR	5E-32		0.0734	[0.061-0.086] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	20985228	20985229	rs17674149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs17674149-G	NR	6E-25		0.0861	[0.07-0.102] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	20985228	20985229	rs17674149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs17674149-G	NR	2E-19		0.0804	[0.063-0.098] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	20990503	20990504	rs75062112	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12p12.2	NR	rs75062112-?	NR	6E-9	(conditional on round 5)	0.10688987	[0.071-0.143] unit decrease novel	Illumina [6108953] (imputed)	N
745	chr12	20998108	20998109	rs17674290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12p12.2		rs17674290-G	NR	2E-11		0.0217	[0.015-0.028] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
745	chr12	20998452	20998453	rs137858877	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12p12.2	NR	rs137858877-?	NR	4E-13	(conditional on round 4)	0.14862603	[0.11-0.19] unit decrease novel	Illumina [6108953] (imputed)	N
745	chr12	21006793	21006794	rs35362531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12p12.2		rs35362531-A	NR	8E-52		0.0477	[0.042-0.054] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
745	chr12	21011480	21011481	rs145334570	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs145334570-A	0.0136	2E-8	(Cer d16:1/16:0)	0.4638	[0.3-0.63] unit decrease	Illumina [~ 47000000] (imputed)	N
745	chr12	21014093	21014094	rs557250003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	12p12.2		rs557250003-G	0.045856	1E-130		0.227267	[0.21-0.25] unit increase	Illumina [13476323] (imputed)	N
745	chr12	21014177	21014178	rs7306033	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	12p12.2	SLCO1B3	rs7306033-?	NR	2E-12		0.0023	[0.0015-0.0031] unit increase	Affymetrix [21347608] (imputed)	N
745	chr12	21014177	21014178	rs7306033	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	12p12.2	SLCO1B3	rs7306033-?	NR	1E-21		0.0053	[0.0041-0.0065] unit increase	Affymetrix [21347608] (imputed)	N
745	chr12	21015423	21015424	rs368572652	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	12p12.2		rs368572652-?	NR	5E-11		0.346433	[0.24-0.45] unit increase	NR [9800000] (imputed)	N
745	chr12	21017874	21017875	rs2417940	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	SLCO1B3	rs2417940-?	0.16	7E-19	(Total bilirubin)	0.059	[0.045-0.073] unit increase	Affymetrix [658288] (imputed)	N
745	chr12	21017874	21017875	rs2417940	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	SLCO1B3	rs2417940-?	0.16	5E-13	(Indirect bilirubin)	0.056	[0.04-0.072] unit increase	Affymetrix [658288] (imputed)	N
745	chr12	21017874	21017875	rs2417940	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	12p12.2	SLCO1B3	rs2417940-?	0.16	2E-16	(Direct bilirubin)	0.074	[0.056-0.092] unit increase	Affymetrix [658288] (imputed)	N
745	chr12	21017874	21017875	rs2417940	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	12p12.2	SLCO1B3, LST3	rs2417940-?	0.207	2E-17		0.048	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
745	chr12	21018955	21018956	rs117239853	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs117239853-A	NR	3E-16		0.0716	[0.054-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr12	21018955	21018956	rs117239853	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs117239853-A	NR	4E-10		0.0597	[0.041-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr12	21020987	21020988	rs74588265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs74588265-T	NR	2E-9		0.0645	[0.043-0.086] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	21024861	21024862	rs73233620	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	12p12.2	SLCO1B3	rs73233620-G	0.199	5E-8		0.073	[0.063-0.083] unit increase	NR [NR] (imputed)	N
745	chr12	21024861	21024862	rs73233620	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs73233620-T	0.8556	5E-12	(Cer d18:2/16:0)	0.1124	[0.08-0.145] unit increase	Illumina [~ 47000000] (imputed)	N
745	chr12	21024861	21024862	rs73233620	31319653	Jeon C	2019-07-12	Epidemiol Health	Bilirubin and risk of ischemic heart disease in Korea: A two-sample Mendelian randomization study.	Bilirubin levels	33,598 Korean ancestry individuals	NA	12p12.2	SLCO1B3	rs73233620-G	NR	1E-65		0.057	[0.051-0.063] unit increase	NR [at least 830000] (imputed)	N
745	chr12	21024861	21024862	rs73233620	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12p12.2	SLCO1B3	rs73233620-?	NR	8E-106		0.1136	[0.1-0.12] unit increase novel	Illumina [6108953] (imputed)	N
745	chr12	21027326	21027327	rs34691116	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12p12.2	SLCO1B3	rs34691116-C	0.852745	2E-60		0.0116502	[0.01-0.013] unit decrease	Affymetrix [13995440] (imputed)	N
745	chr12	21028207	21028208	rs60140950	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12p12.2	SLCO1B3	rs60140950-G	0.852722	3E-20		0.00497849	[0.0039-0.0061] unit decrease	Affymetrix [13995440] (imputed)	N
745	chr12	21032542	21032543	rs61673910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	12p12.2		rs61673910-?	NR	2E-30		0.427707	[0.35-0.5] unit increase	NR [9800000] (imputed)	N
745	chr12	21032542	21032543	rs61673910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	12p12.2		rs61673910-?	NR	2E-30		0.387126	[0.32-0.46] unit increase	NR [9800000] (imputed)	N
745	chr12	21038608	21038609	rs74528913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs74528913-A	NR	2E-104		0.1704	[0.15-0.19] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	21038608	21038609	rs74528913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs74528913-A	NR	4E-74		0.1519	[0.14-0.17] unit increase	Affymetrix [9000000] (imputed)	N
745	chr12	21039678	21039679	rs61922185	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12p12.2	NR	rs61922185-T	0.321001	2E-11		0.0214027	[0.015-0.028] unit increase	Affymetrix [16577313] (imputed)	N
745	chr12	21046950	21046951	rs73073222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12p12.2		rs73073222-A	NR	1E-17		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
745	chr12	21057280	21057281	rs7953767	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12p12.2	SLCO1B3	rs7953767-T	0.16	7E-13		7.17	z-score increase	Affymetrix [4312306] (imputed)	N
745	chr12	21074121	21074122	rs2117032	19419973	Sanna S	2009-05-06	Hum Mol Genet	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	12p12.2	SLCO1B3	rs2117032-C	0.47	3E-14		0.13	[0.08-0.18] s.d. increase	Affymetrix [362129]	N
745	chr12	21077529	21077530	rs12822755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p12.2	NR	rs12822755-C	0.800165	3E-10		0.014851	[0.01-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
745	chr12	21080675	21080676	rs118113038	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs118113038-T	0.0496	6E-9	(C18:1-DC)	0.2628	[0.17-0.35] unit increase	Illumina [~ 47000000] (imputed)	N
745	chr12	21083861	21083862	rs149104283	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	12p12.2	SLCO1B7, SLCO1B3	rs149104283-T	0.0152	2E-8		4.3198		Illumina [7559010] (imputed)	N
745	chr12	21085953	21085954	rs183884248	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Total bilirubin levels	6,018 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	12p12.2		rs183884248-T	0.0504	1E-7		0.21	[0.13-0.29] unit increase	Illumina [7880617]	N
745	chr12	21099271	21099272	rs11045611	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.2	intergenic	rs11045611-?	NR	4E-12	(X-11538)	0.05788	[NR] unit decrease	Affymetrix [655658]	N
746	chr12	21107375	21107376	rs2217693	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	12p12.2		rs2217693-G	0.925	8E-8		0.188639	[0.12-0.26] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
746	chr12	21136306	21136307	rs148521650	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs148521650-T	0.0503	1E-8	(Cer d18:2/16:0)	0.1721	[0.11-0.23] unit decrease	Illumina [~ 47000000] (imputed)	N
746	chr12	21142620	21142621	rs118157850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs118157850-A	NR	1E-18		0.0534	[0.042-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21142620	21142621	rs118157850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs118157850-A	NR	1E-14		0.0506	[0.038-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21144924	21144925	rs73062454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs73062454-C	NR	5E-38		0.0749	[0.064-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21144924	21144925	rs73062454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs73062454-C	NR	3E-20		0.0586	[0.046-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21149786	21149787	rs55986512	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	12p12.2	intergenic	rs55986512-A	0.089	5E-8		0.074	[0.058-0.09] unit increase	NR [NR] (imputed)	N
746	chr12	21153006	21153007	rs117051485	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	12p12.2	NR	rs117051485-G	NR	2E-6		0.3821	[0.23-0.54] SD units increase	NR [10700000] (imputed)	N
746	chr12	21154086	21154087	rs73245826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs73245826-A	NR	3E-59		0.0836	[0.074-0.094] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21154086	21154087	rs73245826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs73245826-A	NR	6E-34		0.0671	[0.056-0.078] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21161024	21161025	rs7965567	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	12p12.2		rs7965567-T	0.051	8E-7		0.251377	[0.15-0.35] unit increase	Affymetrix, Illumina [538635] (imputed)	N
746	chr12	21161177	21161178	rs76300959	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12p12.2	NR	rs76300959-?	NR	3E-18	(conditional on round 3)	0.04089577	[0.032-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
746	chr12	21172052	21172053	rs10505871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs10505871-C	NR	1E-50		0.0368	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21172052	21172053	rs10505871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p12.2	NR	rs10505871-C	NR	2E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21172052	21172053	rs10505871	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs10505871-C	NR	2E-49		0.0394	[0.034-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21176134	21176135	rs1546308	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs1546308-C	NR	3E-23		0.0492	[0.039-0.059] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21176134	21176135	rs1546308	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs1546308-C	NR	2E-22		0.0526	[0.042-0.063] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21176986	21176987	rs4762694	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.2	NR	rs4762694-?	NR	5E-23				Affymetrix [NR]	N
746	chr12	21179262	21179263	rs76151543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs76151543-G	NR	9E-39		0.1058	[0.09-0.122] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21179262	21179263	rs76151543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs76151543-G	NR	5E-27		0.0932	[0.076-0.11] unit increase	Affymetrix [9000000] (imputed)	N
746	chr12	21181225	21181226	rs1604542	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12p12.2	NR	rs1604542-?	NR	3E-34		0.06038	[0.051-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
746	chr12	21193962	21193963	rs117246238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.2	NR	rs117246238-A	NR	3E-10		0.0511	[0.035-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21193962	21193963	rs117246238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.2	NR	rs117246238-A	NR	5E-12		0.061	[0.044-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr12	21195967	21195968	rs116853509	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs116853509-T	0.0615	5E-10	(C18-DC:C20-OH)	0.227	[0.15-0.3] unit increase	Illumina [~ 47000000] (imputed)	N
746	chr12	21195967	21195968	rs116853509	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.2	SLCO1B1	rs116853509-T	0.0614	4E-10	(C18:1-DC)	0.2404	[0.16-0.32] unit increase	Illumina [~ 47000000] (imputed)	N
746	chr12	21200088	21200089	rs11045681	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.2		rs11045681-G	NR	2E-13		0.103531	[0.076-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr12	21205560	21205561	rs11045696	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.2		rs11045696-G	NR	2E-13		0.103144	[0.076-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21262623	21262623	rs200572461	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	12p12.1	NR	rs200572461-?	NR	8E-6		0.1074	[0.06-0.154] unit increase	Illumina [at least 560000] (imputed)	N
747	chr12	21264940	21264941	rs113036199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs113036199-T	NR	1E-11		0.0537	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
747	chr12	21272301	21272302	rs11045773	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045773-G	NR	4E-14		0.105807	[0.078-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21282952	21282953	rs4149014	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	12p12.1	SLCO1B1	rs4149014-G	0.228	5E-8		0.03	[0.02-0.04] unit decrease	NR [NR] (imputed)	N
747	chr12	21282952	21282953	rs4149014	31319653	Jeon C	2019-07-12	Epidemiol Health	Bilirubin and risk of ischemic heart disease in Korea: A two-sample Mendelian randomization study.	Bilirubin levels	33,598 Korean ancestry individuals	NA	12p12.1	SLCO1B1	rs4149014-G	NR	4E-14		0.024	[0.018-0.03] unit decrease	NR [at least 830000] (imputed)	N
747	chr12	21291560	21291561	rs4149018	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	12p12.1	SLCO1B1	rs4149018-?	NR	1E-7				Affymetrix [5486770] (imputed)	N
747	chr12	21295278	21295279	rs75593707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs75593707-A	NR	1E-38		0.0866	[0.073-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr12	21295278	21295279	rs75593707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs75593707-A	NR	7E-28		0.0798	[0.065-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr12	21313159	21313160	rs7296435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs7296435-G	NR	6E-30		0.0487	[0.04-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr12	21313159	21313160	rs7296435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs7296435-G	NR	5E-18		0.0402	[0.031-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr12	21313159	21313160	rs7296435	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	12p12.1	SLCO1B1	rs7296435-A	0.903	4E-6	(adjusted for severity)	1.4925373	[1.32-1.67]	Affymetrix, Illumina [~ 8500000] (imputed)	N
747	chr12	21317790	21317791	rs4149032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149032-T	NR	7E-15		0.0912576	[0.068-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21319525	21319526	rs2199766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	12p12.1		rs2199766-G	0.673454	1E-17		0.0368223	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
747	chr12	21320500	21320501	rs73062310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs73062310-T	NR	4E-187		0.3121	[0.29-0.33] unit increase	Affymetrix [9000000] (imputed)	N
747	chr12	21320500	21320501	rs73062310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs73062310-T	NR	2E-126		0.2672	[0.25-0.29] unit increase	Affymetrix [9000000] (imputed)	N
747	chr12	21321369	21321370	rs10841753	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone conjugates/estrone ratio in resected early stage estrogen-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	12p12.1	SLCO1B1	rs10841753-C	0.208	3E-12		0.43	[0.31-0.55] unit decrease	Illumina [8203257] (imputed)	N
747	chr12	21321369	21321370	rs10841753	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12p12.1	SLCO1B1	rs10841753-T	0.19	7E-6		7.1	[4.0-10.2] mL/min/m2 decrease	Affymetrix [398699]	N
747	chr12	21323610	21323611	rs2417957	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke (large artery atherosclerosis)	401 European ancestry cases, 17,164 European ancestry controls, 23 African American ancestry cases, 352 African American ancestry controls, 257 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	NA	12p12.1	SLCO1B1	rs2417957-T	NR	3E-8	(EA)	2.78	[1.96-4.00]	Illumina [up to 13439215] (imputed)	N
747	chr12	21329760	21329761	rs11045818	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12p12.1	SLCO1B1	rs11045818-G	0.14	7E-7		9.3	[5.7-12.9] mL/min/m2 decrease	Affymetrix [398699]	N
747	chr12	21329812	21329813	rs11045819	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045819-A	NR	2E-15		0.124745	[0.094-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21329812	21329813	rs11045819	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045819-A	NR	4E-26		0.158376	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21329812	21329813	rs11045819	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12p12.1	NR	rs11045819-A	0.16	2E-9		0.0147	[0.0098-0.0196] unit increase	NR [NR]	N
747	chr12	21331548	21331549	rs4149056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12p12.1		rs4149056-T	0.849086	4E-24		0.0576657	[0.047-0.069] unit increase	NR [11722792] (imputed)	N
747	chr12	21331548	21331549	rs4149056	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RHOD	5,366 Icelandic ancestry individuals	NA	12p12.1		rs4149056-C	0.1598	1E-12		0.181906	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
747	chr12	21331548	21331549	rs4149056	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAG4	5,368 Icelandic ancestry individuals	NA	12p12.1		rs4149056-C	0.1598	9E-21		0.246681	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12p12.1		rs4149056-C	NR	9E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p12.1		rs4149056-C	NR	8E-11		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p12.1		rs4149056-C	NR	6E-20		0.0253	[0.02-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p12.1		rs4149056-C	NR	1E-18		0.0244	[0.019-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149056-C	NR	3E-19		0.144959	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149056-C	NR	1E-26		0.164608	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
747	chr12	21331548	21331549	rs4149056	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	12p12.1	NR	rs4149056-C	0.15	7E-16		1.14	NR	NR [8853336] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	5E-20	(taurocholenate sulfate)	0.318	[0.25-0.39] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	4E-60	(glycocholenate sulfate*)	0.568	[0.5-0.64] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	4E-13	(octadecanedioate)	0.253	[0.18-0.32] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	2E-49	(hexadecanedioate)	0.506	[0.44-0.57] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	2E-44	(tetradecanedioate)	0.485	[0.42-0.55] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	1E-42	(glycodeoxycholate sulfate)	0.474	[0.41-0.54] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	1E-172	(glycochenodeoxycholate glucuronide (1))	0.956	[0.89-1.02] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	1E-13	(pregnenolone sulfate)	0.253	[0.19-0.32] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	1E-13	(bilirubin (E,Z or Z,E)*)	0.259	[0.19-0.33] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.881431	1E-11	(androstenediol (3beta,17beta) disulfate (2))	0.235	[0.17-0.3] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32961594	Neuvonen M	2020-09-22	Clin Pharmacol Ther	Identification of Glycochenodeoxycholate 3-O-Glucuronide and Glycodeoxycholate 3-O-Glucuronide as Highly Sensitive and Specific OATP1B1 Biomarkers.	Fasting plasma glycodeoxycholate 3-O-glucuronide concentration	356 Finnish ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	2E-17				Illumina [NR]	N
747	chr12	21331548	21331549	rs4149056	32961594	Neuvonen M	2020-09-22	Clin Pharmacol Ther	Identification of Glycochenodeoxycholate 3-O-Glucuronide and Glycodeoxycholate 3-O-Glucuronide as Highly Sensitive and Specific OATP1B1 Biomarkers.	Fasting plasma glycochenodeoxycholate 3-O-glucuronide concentration	356 Finnish ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	3E-30				Illumina [NR]	N
747	chr12	21331548	21331549	rs4149056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p12.1	SLCO1B1	rs4149056-C	0.151297	1E-23		0.031158362	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p12.1	SLCO1B1	rs4149056-C	0.151284	1E-15		0.024971586	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p12.1	SLCO1B1	rs4149056-C	0.151394	7E-20		0.0286734	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p12.1	SLCO1B1	rs4149056-C	0.151396	3E-19		0.02751145	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs4149056-C	0.147783	1E-24				Affymetrix, Illumina [24246363] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p12.1	NR	rs4149056-C	0.152592	6E-25		0.026064	[0.021-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs4149056-C	0.147405	9E-25				Affymetrix, Illumina [20825802] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p12.1	NR	rs4149056-C	0.152207	1E-23		0.026914	[0.022-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	6E-19		0.0326	[0.026-0.039] unit increase	Affymetrix [5701386] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	3E-7		0.58	[0.34-0.82] unit decrease	Affymetrix [629686]	N
747	chr12	21331548	21331549	rs4149056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12p12.1	NR	rs4149056-C	0.15140299999999995	1E-14		0.0289515	[0.021-0.037] unit increase	Affymetrix [16580851] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p12.1	NR	rs4149056-T	0.848805	2E-74		0.0298898	[0.027-0.033] unit increase	Affymetrix [16585854] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p12.1	NR	rs4149056-T	0.848805	4E-45		0.0269228	[0.023-0.031] unit increase	Affymetrix [16585866] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12p12.1	NR	rs4149056-C	0.15125500000000003	2E-16		0.0231508	[0.018-0.029] unit increase	Affymetrix [16583148] (imputed)	N
747	chr12	21331548	21331549	rs4149056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12p12.1	NR	rs4149056-C	0.151223	3E-35		0.0425623	[0.036-0.049] unit increase	Affymetrix [16585745] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs4149056-C	0.18	4E-32	(glycocholenate sulfate)	0.677	[0.57-0.79] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs4149056-C	0.18	2E-11	(X - 21470)	0.588	[0.42-0.76] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.8738	2E-12	(C18-DC:C20-OH)	0.1689	[0.12-0.22] unit decrease	Illumina [~ 47000000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.8737	2E-13	(C18:1-DC)	0.1869	[0.13-0.24] unit decrease	Illumina [~ 47000000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.8473	2E-8		0.0242	[0.016-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
747	chr12	21331548	21331549	rs4149056	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	12p12.1	SLCO1B1	rs4149056-?	NR	3E-9		5.15	[3.13-8.45]	Illumina [654642] (imputed)	N
747	chr12	21331548	21331549	rs4149056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p12.1		rs4149056-?	NR	2E-22				NR [~ 8900000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p12.1		rs4149056-?	NR	4E-12				NR [~ 8900000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	12p12.1	SLCO1B1	rs4149056-T	0.84	6E-11		0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
747	chr12	21331548	21331549	rs4149056	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p12.1	SLCO1B1	rs4149056-T	0.8516	2E-17		0.0335	[0.026-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p12.1	NR	rs4149056-T	NR	2E-9		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr12	21331548	21331549	rs4149056	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma estrone conjugates levels in resected early stage estrogen-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	12p12.1	SLCO1B1	rs4149056-C	0.136	4E-11		0.5	[0.35-0.65] pg/mL increase	Illumina [8203257] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	12p12.1	SLCO1B1	rs4149056-T	0.82	6E-328	(isoleucine/X-11529)	0.3	[0.28-0.32] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.84	3E-18	(1-arachidonoylglycerophosphoethanolamine)	0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.84	1E-73	(X-12063)	0.118	[0.1-0.13] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.84	1E-18	(4-androsten-3beta,17beta-diol disulfate 2)	0.049	[0.037-0.061] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.83	9E-44	(X-12456)	0.081	[0.069-0.093] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.83	3E-32	(X-11491)	0.088	[0.072-0.104] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-T	0.82	6E-315	(X-11529)	0.295	[0.28-0.31] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.1	LST-3TM12	rs4149056-?	NR	1E-10	(LPE 20:4)	0.3017178	[0.21-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
747	chr12	21331548	21331549	rs4149056	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	8E-17	(X-12456)	0.08351	[NR] unit increase	Affymetrix [655658]	N
747	chr12	21331548	21331549	rs4149056	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	5E-22	(X-13429)	0.141	[NR] unit increase	Affymetrix [655658]	N
747	chr12	21331548	21331549	rs4149056	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	5E-20	(X-12063)	0.1016	[NR] unit increase	Affymetrix [655658]	N
747	chr12	21331548	21331549	rs4149056	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	3E-81	(X-11529)	0.2564	[NR] unit increase	Affymetrix [655658]	N
747	chr12	21331548	21331549	rs4149056	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149056-?	NR	1E-37	(X-11538)	0.1087	[NR] unit increase	Affymetrix [655658]	N
747	chr12	21331548	21331549	rs4149056	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	12p12.1	SLCO1B1	rs4149056-T	0.82	2E-8	(Men + Women)	0.029	[0.019-0.039] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
747	chr12	21331548	21331549	rs4149056	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	12p12.1	LST-3TM12, SLCO1B1, SLCO1A2	rs4149056-C	0.15	7E-13		0.05	[0.03-0.07] umol/l increase in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
747	chr12	21331548	21331549	rs4149056	18650507	Link E	2008-07-23	N Engl J Med	SLCO1B1 variants and statin-induced myopathy--a genomewide study.	Response to statin therapy	85 European ancestry cases, 90 European ancestry controls	21 European ancestry cases, 16,643 European ancestry controls	12p12.1	SLCO1B1	rs4149056-C	0.13	2E-9		4.5	[2.60-7.70]	Illumina [316184]	N
747	chr12	21331598	21331599	rs4149057	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149057-T	NR	2E-12		0.0818207	[0.059-0.105] unit increase	Affymetrix [87696910] (imputed)	N
747	chr12	21334368	21334369	rs12819994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12p12.1	SLCO1B1	rs12819994-C	0.160282	1E-10		0.019628743	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21334368	21334369	rs12819994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p12.1	SLCO1B1	rs12819994-C	0.160282	6E-11		0.019854309	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr12	21338405	21338406	rs10770791	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	12p12.1		rs10770791-C	0.498	5E-8		0.107475	[0.068-0.147] unit increase	Affymetrix, Illumina [538635] (imputed)	N
747	chr12	21343228	21343229	rs2417966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p12.1	SLCO1B1	rs2417966-G	0.241585	1E-12		0.018575119	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
747	chr12	21343228	21343229	rs2417966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p12.1	SLCO1B1	rs2417966-G	0.241603	1E-11		0.017714232	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
747	chr12	21343832	21343833	rs73079476	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12p12.1		rs73079476-A	0.85	6E-17		0.13	[0.1-0.16] % increase	Affymetrix [NR] (imputed)	N
747	chr12	21343832	21343833	rs73079476	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs73079476-A	0.868997	2E-16	(androstenediol (3alpha, 17alpha) monosulfate (3))	0.274	[0.21-0.34] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21343832	21343833	rs73079476	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs73079476-A	0.868997	1E-13	(1-arachidonoyl-GPE (20:4n6)*)	0.246	[0.18-0.31] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21343832	21343833	rs73079476	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12p12.1	SLCO1B1	rs73079476-A	0.868997	2E-16	(androstenediol (3alpha, 17alpha) monosulfate (3))	0.274	[0.21-0.34] unit decrease	Illumina [13039987] (imputed)	N
747	chr12	21343832	21343833	rs73079476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12p12.1	NR	rs73079476-A	0.848729	4E-40		0.0544901	[0.046-0.063] unit increase	Affymetrix [16577313] (imputed)	N
747	chr12	21343885	21343886	rs67981690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	12p12.1		rs67981690-A	0.870901	3E-8		0.032937	[0.021-0.045] unit increase	NR [11722792] (imputed)	N
747	chr12	21343885	21343886	rs67981690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12p12.1		rs67981690-A	0.870901	5E-10		0.0369237	[0.025-0.049] unit decrease	NR [11722792] (imputed)	N
747	chr12	21343885	21343886	rs67981690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	12p12.1		rs67981690-A	0.870901	7E-9		0.0352695	[0.023-0.047] unit decrease	NR [11722792] (imputed)	N
747	chr12	21343885	21343886	rs67981690	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p12.1	SLCO1B1	rs67981690-A	0.870113	2E-23		0.0297197	[0.024-0.036] unit decrease	Affymetrix [NR] (imputed)	N
747	chr12	21347020	21347021	rs12367888	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs12367888-G	0.85798	7E-15	(taurocholenate sulfate)	0.256	[0.19-0.32] unit increase	Illumina [13039987] (imputed)	N
747	chr12	21347020	21347021	rs12367888	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs12367888-G	0.85798	3E-21	(glycocholenate sulfate*)	0.313	[0.25-0.38] unit increase	Illumina [13039987] (imputed)	N
747	chr12	21350395	21350396	rs7957274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs7957274-C	NR	3E-12		0.105789	[0.076-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21350395	21350396	rs7957274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs7957274-C	NR	1E-22		0.141257	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr12	21350688	21350689	rs11045856	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM23	5,366 Icelandic ancestry individuals	NA	12p12.1		rs11045856-G	0.2222	7E-15		0.173262	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
747	chr12	21350688	21350689	rs11045856	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs11045856-T	0.85647	6E-40	(glycochenodeoxycholate glucuronide (1))	0.426	[0.36-0.49] unit increase	Illumina [13039987] (imputed)	N
747	chr12	21350688	21350689	rs11045856	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs11045856-T	0.85647	1E-24	(tetradecanedioate)	0.336	[0.27-0.4] unit increase	Illumina [13039987] (imputed)	N
747	chr12	21352314	21352315	rs1871395	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12p12.1		rs1871395-?	NR	6E-13		0.0203733	[0.015-0.026] unit decrease	NR [6912294] (imputed)	N
747	chr12	21352314	21352315	rs1871395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p12.1	NR	rs1871395-A	0.84819	3E-100		0.0323016	[0.029-0.035] unit increase	Affymetrix [16582621] (imputed)	N
747	chr12	21352314	21352315	rs1871395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p12.1	NR	rs1871395-A	0.84819	5E-88		0.0325026	[0.029-0.036] unit increase	Affymetrix [16582614] (imputed)	N
747	chr12	21352314	21352315	rs1871395	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	12p12.1	SLCO1B1	rs1871395-G	0.2806	4E-6	(LPE(22:6;0))	0.1624	[0.093-0.232] unit increase	Illumina [~ 9300000] (imputed)	N
747	chr12	21352314	21352315	rs1871395	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs1871395-A	0.84	4E-31	(1-arachidonoylglycerophosphoinositol)	0.04	[0.034-0.046] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21352314	21352315	rs1871395	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs1871395-A	0.84	1E-89	(X-11538)	0.11	[0.098-0.122] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21352314	21352315	rs1871395	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs1871395-A	0.83	2E-52	(hexadecanedioate)	0.089	[0.077-0.101] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21352540	21352541	rs12317268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12p12.1	SLCO1B1	rs12317268-G	0.151944	4E-11		0.020371633	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
747	chr12	21352540	21352541	rs12317268	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12p12.1		rs12317268-A	0.848996	2E-14		0.021	[0.015-0.027] unit decrease	NR [7250403] (imputed)	N
747	chr12	21352540	21352541	rs12317268	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	12p12.1	NR	rs12317268-G	0.151589	9E-12		0.018528	[0.013-0.024] unit decrease	Affymetrix [16668957] (imputed)	N
747	chr12	21352540	21352541	rs12317268	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs12317268-G	0.18	2E-29	(glycochenodeoxycholate glucuronide (1))	0.976	[0.81-1.15] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21352540	21352541	rs12317268	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs12317268-A	0.84	2E-45	(X-14626)	0.054	[0.046-0.062] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21352540	21352541	rs12317268	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs12317268-A	0.83	4E-60	(tetradecanedioate)	0.101	[0.089-0.113] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21352540	21352541	rs12317268	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs12317268-A	0.83	2E-67	(X-13429)	0.138	[0.12-0.15] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
747	chr12	21353910	21353911	rs4149067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12p12.1	SLCO1B1	rs4149067-G	0.184726	5E-10		0.017952055	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
747	chr12	21354367	21354368	rs114419265	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	12p12.1	SLCO1B1	rs114419265-?	NR	1E-14	(glycochenodeoxycholate glucuronide)	0.93	[NR] unit increase	Illumina [14760605] (imputed)	N
747	chr12	21357710	21357711	rs58310495	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol percent change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs58310495-T	0.179	7E-12		0.069	[0.049-0.089] unit increase	Affymetrix [13250765] (imputed)	N
747	chr12	21357710	21357711	rs58310495	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs58310495-T	0.179	5E-11		0.015	[0.011-0.019] unit increase	Affymetrix [13250765] (imputed)	N
747	chr12	21357710	21357711	rs58310495	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	12p12.1	SLC01B1	rs58310495-T	0.179	2E-11		0.016	[0.012-0.02] unit increase	Affymetrix [13250765] (imputed)	N
747	chr12	21357710	21357711	rs58310495	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs58310495-T	0.18	1E-15	(taurocholenate sulfate)	0.585	[0.44-0.73] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357730	21357731	rs56165099	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs56165099-T	0.21	5E-12	(glycodeoxycholate sulfate)	0.649	[0.46-0.83] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357752	21357753	rs55695203	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs55695203-C	0.18	4E-22	(glycochenodeoxycholate glucuronide, glycodeoxycholate sulfate, glycolithocholate sulfate, taurolithocholate 3-sulfate, X-14626, X-16654, X-22520, X-22834)	0.01	[0.008-0.012] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357752	21357753	rs55695203	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs55695203-C	0.18	3E-16	(glycochenodeoxycholate sulfate, glycocholenate sulfate, X-14658, X-21448, X-21467)	0.009	[0.007-0.011] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357752	21357753	rs55695203	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs55695203-C	0.18	1E-17	(taurocholenate sulfate, X-24669)	0.009	[0.007-0.011] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357752	21357753	rs55695203	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs55695203-C	0.18	5E-17	(X - 21467)	0.526	[0.4-0.65] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21357752	21357753	rs55695203	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs55695203-C	0.18	1E-12	(X - 16654)	0.732	[0.53-0.93] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21360760	21360761	rs77289848	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs77289848-A	0.13	2E-11	(X - 14662)	0.579	[0.41-0.75] unit increase	Illumina [7750367] (imputed)	N
747	chr12	21362391	21362392	rs11519272	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	12p12.1	SLCO1B1	rs11519272-?	NR	3E-6		2.37	[1.68-3.36]	Illumina [654642] (imputed)	N
748	chr12	21365136	21365137	rs201210393	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p12.1		rs201210393-?	NR	3E-10		0.0181739	[0.013-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
748	chr12	21365693	21365694	rs199795230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12p12.1	SLCO1B1	rs199795230-T	0.159131	4E-10		0.0191727	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
748	chr12	21367632	21367633	rs57743625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p12.1	NR	rs57743625-G	0.840356	1E-159		0.0300891	[0.028-0.032] unit increase	Affymetrix [16582909] (imputed)	N
748	chr12	21367632	21367633	rs57743625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p12.1	NR	rs57743625-G	0.840356	3E-117		0.0287574	[0.026-0.031] unit increase	Affymetrix [16582965] (imputed)	N
748	chr12	21368721	21368722	rs4363657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4363657-C	NR	4E-15		0.130901	[0.098-0.164] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21368721	21368722	rs4363657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4363657-C	NR	4E-20		0.14566	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21368721	21368722	rs4363657	25898920	Korostishevsky M	2015-04-22	Eur J Hum Genet	Genomics and metabolomics of muscular mass in a community-based sample of UK females.	Blood metabolite levels	3,953 European ancestry individuals	NA	12p12.1	NR	rs4363657-?	NR	9E-46	(X12063 levels)			Illumina [2300000]	N
748	chr12	21368721	21368722	rs4363657	21646302	Bielinski SJ	2011-06-06	Mayo Clin Proc	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4363657-?	0.17	5E-8		0.064	[0.04-0.08] mg/dL increase	Illumina [583129]	N
748	chr12	21368796	21368797	rs2900478	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12p12.1	SLCO1B1	rs2900478-T	0.874056	1E-28	(1-linoleoyl-GPG (18:2)*)	0.378	[0.31-0.44] unit decrease	Illumina [13039987] (imputed)	N
748	chr12	21368796	21368797	rs2900478	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma estrone conjugates levels in resected early stage estrogen-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	12p12.1	SLCO1B1	rs2900478-A	0.14	7E-10		0.48	[0.33-0.63] pg/mL increase	Illumina [8203257] (imputed)	N
748	chr12	21373749	21373760	rs111248794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12p12.1		rs111248794-A,rs111248794-A	0.813766	5E-11		0.0351439	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
748	chr12	21373749	21373760	rs111248794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12p12.1		rs111248794-A,rs111248794-A	0.813766	5E-11		0.0351439	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
748	chr12	21375288	21375289	rs71581941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs71581941-T	NR	4E-15		0.3213	[0.24-0.4] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21375288	21375289	rs71581941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs71581941-T	NR	3E-14		0.3259	[0.24-0.41] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21376508	21376509	rs7954542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs7954542-?	NR	2E-12				NR [~ 8900000] (imputed)	N
748	chr12	21377558	21377559	rs4149080	23233662	Ramsey LB	2012-12-11	Blood	Genome-wide study of methotrexate clearance replicates SLCO1B1.	Methotrexate clearance (acute lymphoblastic leukemia)	22 East Asian ancestry cases, 58 African ancestry, African American or Afro-Caribbean cases, 266 Hispanic or Latin American cases, 806 European ancestry cases, 127 cases	699 European ancestry cases	12p12.1	SLCO1B1	rs4149080-C	0.18	6E-21		12.0	[NR] mL/min/m2 decrease	Affymetrix [~ 5200000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149081-A	NR	2E-16		0.131384	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21378020	21378021	rs4149081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs4149081-A	NR	6E-23		0.149569	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	1E-11		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	2E-20		0.0301	[0.024-0.037] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	8E-676		0.1807	[0.17-0.19] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	3E-75		0.0627	[0.056-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	1E-424		0.1526	[0.15-0.16] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12p12.1	NR	rs4149081-A	NR	1E-12		0.0232	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21378020	21378021	rs4149081	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	12p12.1	SLCO1B1	rs4149081-?		4E-22	(bilirubin levels)			Illumina [629274]	N
748	chr12	21378020	21378021	rs4149081	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149081-?	NR	2E-13	(X-14626)	0.08085	[NR] unit increase	Affymetrix [655658]	N
748	chr12	21378020	21378021	rs4149081	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149081-A	0.205	3E-22	(SM-10 + 59 other traits)	0.209	[NR] unit decrease	Affymetrix, Illumina [534665]	N
748	chr12	21380629	21380630	rs4149083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12p12.1		rs4149083-T	NR	5E-655		0.1495	[0.14-0.15] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
748	chr12	21380629	21380630	rs4149083	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p12.1	SLCO1B1	rs4149083-A	0.838557	1E-12		0.0179174	[0.013-0.023] unit decrease	NR [13737936] (imputed)	N
748	chr12	21382618	21382619	rs11045879	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045879-C	NR	6E-18		0.136908	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21382618	21382619	rs11045879	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045879-C	NR	3E-23		0.149963	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
748	chr12	21382618	21382619	rs11045879	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	12p12.1	SLCO1B1	rs11045879-C	NR	5E-15	(Glycochenodeoxycholic acid 3-glucuronide)			Affymetrix [333722]	N
748	chr12	21382618	21382619	rs11045879	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12p12.1	SLCO1B1	rs11045879-T	0.16	8E-11		1.8	[7.6-14.0] mL/min/m2 increase	Affymetrix [398699]	N
748	chr12	21386486	21386489	rs767735038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p12.1		rs767735038-C	NR	5E-10		0.0222	[0.015-0.029] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
748	chr12	21386492	21386493	rs11045886	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12p12.1		rs11045886-A	0.834882	2E-8		0.029752	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
748	chr12	21386492	21386493	rs11045886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p12.1	SLCO1B1	rs11045886-C	0.165865	4E-10		0.01877049	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
748	chr12	21388620	21388621	rs12829704	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12p12.1	SLCO1B1	rs12829704-A	0.19	9E-21	(octadecanedioate)	0.042	[0.032-0.052] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
748	chr12	21392818	21392819	rs11045893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045893-C	NR	1E-12		0.106843	[0.077-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
748	chr12	21392818	21392819	rs11045893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs11045893-C	NR	7E-22		0.137311	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
748	chr12	21399954	21399955	rs73069021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p12.1		rs73069021-A	NR	1E-8		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
748	chr12	21399954	21399955	rs73069021	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12p12.1	SLCO1B1	rs73069021-A	0.19	9E-19	(X - 24546)	0.722	[0.56-0.88] unit increase	Illumina [7750367] (imputed)	N
748	chr12	21402978	21402979	rs113681054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p12.1	NR	rs113681054-C	0.161257	3E-10		0.016482	[0.011-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
748	chr12	21402978	21402979	rs113681054	25935875	Varenhorst C	2015-05-02	Eur Heart J	Effect of genetic variations on ticagrelor plasma levels and clinical outcomes.	AR-C124910XX levels in individuals with acute coronary syndromes treated with ticagrelor	1,794 European ancestry cases, 18 African and Asian ancestry cases	1,922 European ancestry cases, 19 African and Asian ancestry cases	12p12.1	SLCO1A2, SLCO1B1	rs113681054-T	0.184	4E-13		0.062	[0.044-0.08] unit increase	Illumina [10962468] (imputed)	N
748	chr12	21409294	21409295	rs12427132	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	12p12.1	SLCO1A2	rs12427132-G		5E-6		8.328	unit increase	Illumina [635970]	N
748	chr12	21415495	21415496	rs2199680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12p12.1		rs2199680-A	0.840902	2E-8		0.0321134	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
748	chr12	21424002	21424003	rs7967354	33676726	Ahlstrom S	2021-03-03	Br J Anaesth	First genome-wide association study on rocuronium dose requirements shows association with SLCO1A2.	Rocuronium dose requirement in breast cancer surgery	918 European ancestry individuals	NA	12p12.1	SLCO1A2	rs7967354-G	0.22	5E-11		0.1425	NR unit decrease	Illumina [653034]	N
748	chr12	21428370	21428371	rs3764044	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12p12.1	SLCO1A2, SLCO1B1, IAPP	rs3764044-G	0.03	7E-6		3.68	[2.01-6.74]	Illumina [1556551]	N
748	chr12	21441576	21441577	rs10841784	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	12p12.1	NR	rs10841784-?	NR	3E-6		0.0457	[0.027-0.065] unit increase	Illumina [at least 560000] (imputed)	N
748	chr12	21447996	21447997	rs4149000	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	12p12.1	SLCO1A2	rs4149000-?	NR	3E-6		3.94	[2.36-6.57]	Illumina [654642] (imputed)	N
748	chr12	21447996	21447997	rs4149000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.1	SLCO1B1	rs4149000-?	NR	6E-6	(LPE 20:4)	0.24777551	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
748	chr12	21451394	21451395	rs16923647	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1A2	rs16923647-?	NR	9E-52	(X-11529)	0.2222	[NR] unit increase	Affymetrix [655658]	N
748	chr12	21451394	21451395	rs16923647	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1A2	rs16923647-?	NR	2E-11	(X-12063)	0.07889	[NR] unit increase	Affymetrix [655658]	N
748	chr12	21451394	21451395	rs16923647	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1A2	rs16923647-?	NR	1E-26	(X-11538)	0.09768	[NR] unit increase	Affymetrix [655658]	N
748	chr12	21451394	21451395	rs16923647	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12p12.1	SLCO1A2	rs16923647-?	NR	1E-11	(X-13429)	0.1065	[NR] unit increase	Affymetrix [655658]	N
748	chr12	21451394	21451395	rs16923647	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12p12.1	SLCO1A2	rs16923647-T	0.1	2E-6			[NR]	Affymetrix [398699]	N
748	chr12	21457433	21457434	rs11568563	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	12p12.1	SLCO1A2	rs11568563-?	0.95	7E-8		1.47	[1.28-1.69]	Illumina [531451]	N
748	chr12	21462210	21462211	rs78307740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs78307740-A	NR	3E-12		0.0476	[0.034-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21462210	21462211	rs78307740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs78307740-A	NR	2E-11		0.0502	[0.036-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21467214	21467215	rs7966334	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	12p12.1	SLCO1A2	rs7966334-?		3E-8				Illumina [6419662] (imputed)	N
748	chr12	21476982	21476983	rs4078	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs4078-G	NR	2E-11		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21478110	21478111	rs117350102	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RECQL	5,356 Icelandic ancestry individuals	NA	12p12.1		rs117350102-G	0.04243	2E-9		0.271778	[0.18-0.36] unit decrease	Illumina [7506463] (imputed)	N
748	chr12	21485526	21485527	rs79424089	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p12.1		rs79424089-G	0.07	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
748	chr12	21485526	21485527	rs79424089	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p12.1	NR	rs79424089-G	0.0607	4E-10				NR [9056863] (imputed)	N
748	chr12	21487543	21487544	rs10841795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_22:6_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs10841795-G	NR	3E-11		0.114579	[0.081-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
748	chr12	21487543	21487544	rs10841795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:4_[M-H]1- levels	13,814 British ancestry individuals	NA	12p12.1		rs10841795-G	NR	6E-15		0.127689	[0.096-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
748	chr12	21487543	21487544	rs10841795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs10841795-G	NR	1E-67		0.0619	[0.055-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21487543	21487544	rs10841795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs10841795-G	NR	5E-21		0.0352	[0.028-0.042] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21487543	21487544	rs10841795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p12.1	NR	rs10841795-G	NR	3E-10		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21487543	21487544	rs10841795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs10841795-G	NR	2E-25		0.0404	[0.033-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21488074	21488075	rs61364007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs61364007-A	NR	3E-11		0.0476	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21488074	21488075	rs61364007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs61364007-A	NR	6E-12		0.0536	[0.038-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr12	21495541	21495542	rs11836617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs11836617-A	NR	2E-28		0.0394	[0.032-0.046] unit increase	Affymetrix [9000000] (imputed)	N
748	chr12	21495541	21495542	rs11836617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs11836617-A	NR	1E-16		0.0319	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21497555	21497556	rs116877313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs116877313-A	NR	4E-15		0.0612	[0.046-0.076] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21497953	21497954	rs71446768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs71446768-A	NR	5E-44		0.0766	[0.066-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr12	21497953	21497954	rs71446768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs71446768-A	NR	2E-14		0.0441	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21497953	21497954	rs71446768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs71446768-A	NR	8E-21		0.0563	[0.045-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr12	21508177	21508178	rs11045995	33676726	Ahlstrom S	2021-03-03	Br J Anaesth	First genome-wide association study on rocuronium dose requirements shows association with SLCO1A2.	Rocuronium dose requirement in breast cancer surgery	918 European ancestry individuals	NA	12p12.1	SLCO1A2	rs11045995-G	0.18	1E-10		0.1473	NR unit decrease	Illumina [653034]	N
749	chr12	21509693	21509694	rs61927807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs61927807-T	NR	4E-14		0.0333	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21515499	21515500	rs144436375	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p12.1	RECQL	rs144436375-A	0.9796875	9E-27	(RECQL, 11431_235_3)	0.93485487	[0.77-1.1] unit decrease	Illumina [> 1000000] (imputed)	N
749	chr12	21558219	21558220	rs2192174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs2192174-G	NR	7E-21		0.0524	[0.041-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr12	21558219	21558220	rs2192174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs2192174-G	NR	8E-10		0.0374	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr12	21595450	21595451	rs75806707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs75806707-C	NR	5E-13		0.0778	[0.057-0.099] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21595450	21595451	rs75806707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs75806707-C	NR	7E-10		0.0712	[0.049-0.094] unit increase	Affymetrix [9000000] (imputed)	N
749	chr12	21598885	21598886	rs118171527	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RECQL	5,356 Icelandic ancestry individuals	NA	12p12.1		rs118171527-C	0.02802	8E-34		0.650864	[0.55-0.76] unit increase	Illumina [7506463] (imputed)	N
750	chr12	21654264	21654265	rs73071387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs73071387-A	NR	3E-12		0.0482	[0.035-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr12	21654264	21654265	rs73071387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs73071387-A	NR	2E-13		0.0552	[0.04-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr12	21670251	21670252	rs71539413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs71539413-C	NR	6E-12		0.0709	[0.051-0.091] unit increase	Affymetrix [9000000] (imputed)	N
750	chr12	21670251	21670252	rs71539413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs71539413-C	NR	9E-11		0.0717	[0.05-0.093] unit increase	Affymetrix [9000000] (imputed)	N
750	chr12	21670260	21670261	rs112177514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs112177514-C	NR	7E-13		0.0537	[0.039-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr12	21673088	21673089	rs10743417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs10743417-C	NR	3E-27		0.0495	[0.04-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr12	21673088	21673089	rs10743417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs10743417-C	NR	2E-16		0.0405	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr12	21682238	21682239	rs10770822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p12.1	C12orf39	rs10770822-T	0.628094	3E-11		0.0152175	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
750	chr12	21695438	21695439	rs61733199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs61733199-C	NR	3E-14		0.0674	[0.05-0.085] unit increase	Affymetrix [9000000] (imputed)	N
750	chr12	21695438	21695439	rs61733199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs61733199-C	NR	1E-12		0.0674	[0.049-0.086] unit increase	Affymetrix [9000000] (imputed)	N
750	chr12	21696772	21696773	rs2054434	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p12.1	NR	rs2054434-G	0.198501	3E-13		0.0182476	[0.013-0.023] unit increase	NR [NR]	N
750	chr12	21699927	21699928	rs6487237	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12p12.1	GYS2	rs6487237-A	0.7785	5E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
750	chr12	21702004	21702005	rs7485509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p12.1	NR	rs7485509-T	0.796672	4E-10		0.014368	[0.0099-0.0189] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
750	chr12	21707102	21707103	rs59857578	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12p12.1	GYS2	rs59857578-A	0.220132	5E-20		0.00565655	[0.0044-0.0069] unit increase	Affymetrix [13995440] (imputed)	N
750	chr12	21707105	21707106	rs34155649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p12.1		rs34155649-G	NR	9E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
750	chr12	21709553	21709554	rs10841848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12p12.1		rs10841848-G	NR	3E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
750	chr12	21709553	21709554	rs10841848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p12.1	NR	rs10841848-G	0.796505	2E-12		0.016142	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
750	chr12	21710604	21710605	rs10770828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs10770828-G	0.796035	1E-12				Affymetrix, Illumina [24653286] (imputed)	N
750	chr12	21710748	21710749	rs10770829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12p12.1	GYS2	rs10770829-C	0.801084	6E-11		0.018085321	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
750	chr12	21711604	21711605	rs1871131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs1871131-C	0.795333	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
750	chr12	21713053	21713054	rs1871140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p12.1		rs1871140-T	NR	1E-11		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
750	chr12	21713401	21713402	rs2306180	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12p12.1	GYS2	rs2306180-T		9E-9		0.016	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
750	chr12	21714773	21714774	rs73085377	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	12p12.1	GYS2	rs73085377-?	NR	2E-7		4.22	[2.44-7.3]	Illumina [8600000] (imputed)	N
750	chr12	21726011	21726012	rs10770837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs10770837-A	0.353086	7E-10				Affymetrix, Illumina [17210439] (imputed)	N
750	chr12	21726011	21726012	rs10770837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p12.1	NR	rs10770837-A	0.348332	8E-11		0.012993	[0.0091-0.0169] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
750	chr12	21746566	21746567	rs187630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs187630-T	0.270077	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
750	chr12	21746566	21746567	rs187630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p12.1	NR	rs187630-T	0.300899	4E-14		0.015419	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
750	chr12	21752107	21752108	rs10841855	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	12p12.1	NR	rs10841855-G	0.7504	2E-6		1.0752687	[1.04-1.11]	Affymetrix, Illumina [at least 11579618] (imputed)	N
751	chr12	21766389	21766390	rs74964662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs74964662-G	NR	1E-17		0.0577	[0.044-0.071] unit increase	Affymetrix [9000000] (imputed)	N
751	chr12	21766389	21766390	rs74964662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs74964662-G	NR	5E-15		0.0568	[0.042-0.071] unit increase	Affymetrix [9000000] (imputed)	N
751	chr12	21781245	21781246	rs10841868	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p12.1	NR	rs10841868-G	0.7394	2E-9		0.0315	[0.021-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
751	chr12	21791061	21791062	rs117038277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs117038277-G	NR	3E-16		0.0568	[0.043-0.071] unit increase	Affymetrix [9000000] (imputed)	N
751	chr12	21791061	21791062	rs117038277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12p12.1	NR	rs117038277-G	NR	3E-12		0.0521	[0.037-0.067] unit increase	Affymetrix [9000000] (imputed)	N
751	chr12	21840630	21840631	rs73079245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p12.1		rs73079245-A	NR	3E-8		0.0221	[0.014-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
751	chr12	21843575	21843576	rs11046164	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p12.1	NR	rs11046164-C	0.7576	4E-10		0.0289	[0.02-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
751	chr12	21857408	21857409	rs11046170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs11046170-?	NR	4E-9				NR [~ 8900000] (imputed)	N
751	chr12	21864066	21864067	rs852815	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p12.1	LDHB	rs852815-C	0.243386945227436	4E-6	(F_Enterobacteriaceae_HB)	0.291548	[0.17-0.42] unit decrease	Illumina [7711310] (imputed)	N
751	chr12	21869878	21869879	rs34130616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p12.1		rs34130616-T	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
752	chr12	21936397	21936398	rs118106744	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12p12.1	KCNJ8	rs118106744-C	0.947624	2E-8		0.032944	[0.021-0.044] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
752	chr12	21988087	21988088	rs1517284	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.1	NR	rs1517284-?	NR	8E-12				Affymetrix [NR]	N
752	chr12	21993477	21993478	rs704178	24770881	Nelson PT	2014-04-27	Acta Neuropathol	ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.	Hippocampal sclerosis of aging	241 cases, 1,998 controls	122 cases, 305 controls	12p12.1	ABCC9	rs704178-G	0.49	1E-9	(recessive)	2.133	[1.669-2.726]	NR [4913579] (imputed)	N
752	chr12	21996044	21996045	rs11046207	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p12.1	ABCC9	rs11046207-G	0.023	5E-6	(Sedentary activity )	0.04	[NR] min/d increase	Illumina [899892]	N
752	chr12	22005002	22005003	rs2307024	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	12p12.1		rs2307024-T	0.586134	3E-18		0.0615304	[0.048-0.075] increase	Affymetrix [NR]	N
752	chr12	22005002	22005003	rs2307024	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	12p12.1		rs2307024-T	0.586057	4E-14		0.056983	[0.042-0.072] increase	Affymetrix [NR]	N
752	chr12	22005002	22005003	rs2307024	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12p12.1	ABCC9	rs2307024-T	0.586204	3E-8		0.016621	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
752	chr12	22015021	22015022	rs704191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p12.1		rs704191-C	NR	1E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
752	chr12	22015021	22015022	rs704191	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.1	ABCC9	rs704191-T	0.4449	2E-14		0.1492	[0.11-0.19] mmHg increase	Affymetrix [NR] (imputed)	N
752	chr12	22015021	22015022	rs704191	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p12.1	ABCC9	rs704191-T	0.4604	7E-20		0.1593	[0.12-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
752	chr12	22017409	22017410	rs61688134	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.1	ABCC9	rs61688134-T	0.0143	8E-15		0.0635	[0.047-0.08] unit decrease	Affymetrix [18391927] (imputed)	N
752	chr12	22017409	22017410	rs61688134	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12p12.1	ABCC9	rs61688134-T	0.014	2E-10		0.07	[0.048-0.092] unit decrease	Affymetrix [18391927] (imputed)	N
752	chr12	22017409	22017410	rs61688134	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12p12.1	ABCC9	rs61688134-T	0.014	4E-6		0.06	[0.036-0.084] unit decrease	Affymetrix [18391927] (imputed)	N
753	chr12	22034500	22034501	rs77360959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs77360959-G	NR	7E-12		0.0395	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
753	chr12	22059616	22059617	rs4148660	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	12p12.1	ABCC9	rs4148660-?		1E-7				Illumina [479403]	N
753	chr12	22068160	22068161	rs139975827	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	12p12.1	ABCC9	rs139975827-G	0.63	1E-7		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
753	chr12	22082863	22082864	rs145419136	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12p12.1	ABCC9	rs145419136-T	NR	5E-6	(men)	1.37617	[0.78-1.97] unit decrease	Illumina [13520550] (imputed)	N
753	chr12	22115986	22115987	rs118150066	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RECQL	5,356 Icelandic ancestry individuals	NA	12p12.1		rs118150066-A	0.0213	4E-26		0.649296	[0.53-0.77] unit increase	Illumina [7506463] (imputed)	N
754	chr12	22151572	22151573	rs10743430	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	12p12.1	CMAS	rs10743430-?	NR	6E-7		0.218	[NR] unit decrease	Illumina [478011]	N
754	chr12	22174936	22174937	rs75707332	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	12p12.1	NR	rs75707332-?	NR	1E-6		2.56	NR	Affymetrix [~ 18000000] (imputed)	N
754	chr12	22193116	22193117	rs4488249	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	12p12.1	NR	rs4488249-?		7E-6		0.55	[0.43-0.72]	Illumina [539473] (imputed)	N
755	chr12	22365834	22365835	rs2216228	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	12p12.1	ST8SIA1	rs2216228-G	0.18	4E-6		0.45	[NR] unit increase	Illumina [324623]	N
755	chr12	22404360	22404361	rs17646466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs17646466-?	NR	2E-12				NR [~ 8900000] (imputed)	N
756	chr12	22462277	22462278	rs184061709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p12.1	ST8SIA1	rs184061709-G	1.0	3E-6	(AA)	0.38	unit increase	Illumina [NR] (imputed)	N
756	chr12	22464939	22464940	rs182272664	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p12.1	ST8SIA1	rs182272664-A	0.999	2E-6	(AA)	0.383	unit increase	Illumina [NR] (imputed)	N
756	chr12	22533319	22533320	rs12423535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	12p12.1		rs12423535-C	0.417648	2E-8		0.0242663	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
757	chr12	22544949	22544950	rs61921372	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12p12.1	NR	rs61921372-C	0.571	9E-9		0.00649043	[0.0043-0.0087] unit increase	NR [9732723] (imputed)	N
757	chr12	22555027	22555028	rs144311425	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p12.1	ST8SIA1, C2CD5, ETNK1	rs144311425-?		9E-26				Affymetrix, Illumina [NR] (imputed)	N
757	chr12	22566428	22566429	rs11046430	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12p12.1	SLC2A13	rs11046430-T	0.12	4E-6	(AA)	0.21	[0.13-0.29] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
757	chr12	22592652	22592653	rs117735470	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12p12.1	ST8SIA1, C2CD5	rs117735470-A	0.0894	1E-9		6.07	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
757	chr12	22610291	22610292	rs76639840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p12.1		rs76639840-C	NR	3E-16		0.1371	[0.1-0.17] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
757	chr12	22610291	22610292	rs76639840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p12.1	C2CD5	rs76639840-C	0.00564299999999995	3E-18		0.14262335	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
757	chr12	22610291	22610292	rs76639840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p12.1	C2CD5	rs76639840-C	0.00564500000000001	2E-9		0.098608874	[0.066-0.131] unit increase	Affymetrix [93095623] (imputed)	N
757	chr12	22610291	22610292	rs76639840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p12.1	C2CD5	rs76639840-C	0.00564600000000004	3E-21		0.15494578	[0.12-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
757	chr12	22610291	22610292	rs76639840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs76639840-G	0.994143	9E-25				Affymetrix, Illumina [24588908] (imputed)	N
757	chr12	22610291	22610292	rs76639840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p12.1	NR	rs76639840-G	0.993984	1E-27		0.146248	[0.12-0.17] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
758	chr12	22694281	22694282	rs75567834	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12p12.1	NR	rs75567834-?	NR	5E-6		0.22751	[0.13-0.32] unit increase	NR [13958389] (imputed)	N
758	chr12	22704366	22704367	rs77699638	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12p12.1		rs77699638-C	0.982	3E-8		0.026	[0.016-0.036] unit increase	NR [NR] (imputed)	N
758	chr12	22765863	22765864	rs9943778	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p12.1	ETNK1	rs9943778-A	0.75907	8E-11		0.0153455	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
758	chr12	22769425	22769426	rs73080452	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12p12.1	NR	rs73080452-A	0.22032103370436	4E-8		0.009671048	[0.0062-0.0131] unit decrease	NR [NR]	N
758	chr12	22769425	22769426	rs73080452	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12p12.1	NR	rs73080452-A	0.22032103370436	4E-8		0.0061711627	[0.004-0.0084] unit decrease	NR [NR]	N
758	chr12	22791446	22791447	rs2046602	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p12.1	NR	rs2046602-C		8E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
758	chr12	22793048	22793049	rs73080476	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p12.1	ETNK1	rs73080476-?		8E-6				Illumina [4322238] (imputed)	N
759	chr12	22872640	22872641	rs261940	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12p12.1	NR	rs261940-G	0.472865156985599	2E-9		0.00768251	[0.0052-0.0102] unit increase	NR [NR]	N
759	chr12	22873941	22873942	rs261910	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12p12.1	NR	rs261910-T	0.432479962817792	2E-11		0.010013735	[0.0071-0.0129] unit increase	NR [NR]	N
759	chr12	22873941	22873942	rs261910	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12p12.1	NR	rs261910-T	0.432479962817792	2E-11		0.0063965055	[0.0045-0.0083] unit increase	NR [NR]	N
759	chr12	22874364	22874365	rs261909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12p12.1	NR	rs261909-C	0.436339812054757	5E-12		0.0063911984	[0.0046-0.0082] unit increase	NR [NR]	N
759	chr12	22874364	22874365	rs261909	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	12p12.1	NR	rs261909-C	0.44	3E-9		0.018	[0.012-0.024] unit increase	Affymetrix [~ 8600000] (imputed)	N
759	chr12	22881332	22881333	rs4337088	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12p12.1	NR	rs4337088-G	0.56907783308692	1E-9		0.0074976557	[0.0051-0.0099] unit decrease	NR [NR]	N
759	chr12	22881332	22881333	rs4337088	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12p12.1	NR	rs4337088-A	NR	2E-8		5.656	z score increase	Affymetrix [10847151] (imputed)	N
760	chr12	22972168	22972169	rs10842075	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12p12.1		rs10842075-?	NR	4E-6		0.3512774	[0.2-0.5] unit decrease	Illumina [9906551] (imputed)	N
760	chr12	22972168	22972169	rs10842075	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12p12.1		rs10842075-?	NR	6E-6		0.3623695	[0.21-0.52] unit decrease	Illumina [9901720] (imputed)	N
760	chr12	23012942	23012943	rs77475884	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12p12.1	NR	rs77475884-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
760	chr12	23056719	23056720	rs2466882	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	12p12.1	NR	rs2466882-A	0.582441	1E-6		1.076	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
760	chr12	23060362	23060363	rs2433634	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p12.1	ETNK1, SOX5	rs2433634-C	0.27590000000000003	5E-10		1.0271623		Affymetrix [11880941] (imputed)	N
760	chr12	23060362	23060363	rs2433634	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	12p12.1	ETNK1	rs2433634-A	0.7179	3E-9		0.01491602	[0.01-0.02] unit decrease	Affymetrix [11514463] (imputed)	N
760	chr12	23064037	23064038	rs2467109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12p12.1		rs2467109-?	NR	2E-8				NR [~ 8900000] (imputed)	N
761	chr12	23081984	23081985	rs12368401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p12.1	Intergenic	rs12368401-T	0.4783	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
761	chr12	23085905	23085906	rs118043586	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12p12.1		rs118043586-?	NR	3E-6		1.1403143	[1.07915736256278-1.20493702793152]	Illumina [up to 7827597] (imputed)	N
761	chr12	23092625	23092626	rs1603460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.1		rs1603460-T	0.4206	2E-10		0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
761	chr12	23092625	23092626	rs1603460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.1	Intergenic	rs1603460-T	0.4206	8E-11	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
761	chr12	23173645	23173646	rs6487322	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.1	KIAA0528	rs6487322-?	NR	8E-6	(indole-3-propionate)	0.19351856	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
761	chr12	23175442	23175443	rs10842095	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12p12.1	RP11-114G22.1	rs10842095-T	0.8505	3E-6		0.0533	[0.031-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
761	chr12	23175486	23175487	rs111950895	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC084816.1	rs111950895-?	NR	8E-9	(female)	1.41553	[NR] unit decrease	Affymetrix [NR] (imputed)	N
762	chr12	23224252	23224253	rs77934287	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12p12.1	AK094733	rs77934287-?	NR	5E-7		0.376	[0.17-0.58] unit decrease	Illumina [at least 13000000] (imputed)	N
762	chr12	23238325	23238326	rs112633616	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	12p12.1	LOC101928441	rs112633616-?	NR	8E-6				Illumina [2668805]	N
762	chr12	23309378	23309379	rs1314503368	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12p12.1		rs1314503368-C	0.0119	2E-6		2.032	[1.514-2.726]	Affymetrix [7975321] (imputed)	N
763	chr12	23404162	23404163	rs1463438	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p12.1	NR	rs1463438-?	NR	5E-6				Affymetrix [NR]	N
763	chr12	23426177	23426178	rs117158239	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	12p12.1	LOC101928441	rs117158239-?	NR	9E-6				Illumina [2668805]	N
764	chr12	23502813	23502814	rs77422815	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12p12.1		rs77422815-C	0.02386	6E-6		3.03	[1.874-4.899]	Affymetrix [7975321] (imputed)	N
764	chr12	23541229	23541230	rs61924290	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	12p12.1	NR	rs61924290-?	NR	3E-6		0.1183	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
765	chr12	23599252	23599253	rs1584120	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	12p12.1	SOX5	rs1584120-T	0.62	6E-6		1.64		Affymetrix [at least 730985] (imputed)	N
765	chr12	23633431	23633432	rs1120004	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12p12.1	SOX5	rs1120004-?	NR	1E-8		1.064	[1.04-1.09]	Illumina [8000000] (imputed)	N
765	chr12	23639916	23639917	rs2120771	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	12p12.1	intergenic	rs2120771-G	NR	3E-6		0.107	[0.062-0.152] unit decrease	Illumina [628922]	N
765	chr12	23640478	23640479	rs7303433	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p12.1	NR	rs7303433-G	NR	3E-6		1.1111112	[NR]	Illumina [7158791] (imputed)	N
765	chr12	23661041	23661042	rs150811371	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	12p12.1	ETNK1, SOX5	rs150811371-A	0.08	3E-6	(European)	3.4		Illumina [7993459] (imputed)	N
765	chr12	23697724	23697725	rs7965154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.1		rs7965154-A	0.3062	2E-8		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
765	chr12	23697724	23697725	rs7965154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.1	Intergenic	rs7965154-A	0.3062	8E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
765	chr12	23721068	23721069	rs528967612	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	12p12.1		rs528967612-T	0.01322	4E-6		1.976	[1.479-2.638]	Affymetrix [7975321] (imputed)	N
766	chr12	23741545	23741546	rs4357783	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	12p12.1	SOX5	rs4357783-?	NR	1E-13	(>=14 yr)			Illumina [747780]	N
766	chr12	23741545	23741546	rs4357783	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	12p12.1	SOX5	rs4357783-?	NR	1E-12				Illumina [747780]	N
766	chr12	23744649	23744650	rs10771005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs10771005-?	NR	6E-9				NR [~ 8900000] (imputed)	N
766	chr12	23753926	23753927	rs11608710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.1	NR	rs11608710-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
766	chr12	23753926	23753927	rs11608710	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p12.1	NA	rs11608710-T	0.94	1E-9		0.0247	[0.017-0.033] unit decrease	NR [~ 27400000] (imputed)	N
766	chr12	23779060	23779061	rs9971907	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12p12.1	NR	rs9971907-A	NR	8E-9		5.76	z score decrease	Affymetrix [10847151] (imputed)	N
766	chr12	23836211	23836212	rs11047047	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	12p12.1	NR	rs11047047-G	NR	6E-6	(univariable, recessive)	3.734	[2.104-6.613]	Illumina [729373]	N
767	chr12	23879553	23879554	rs7295342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12p12.1		rs7295342-G	NR	1E-10		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
767	chr12	23880488	23880489	rs7980042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p12.1		rs7980042-C	NR	8E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
767	chr12	23880488	23880489	rs7980042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	12p12.1		rs7980042-C	0.804053	2E-9		0.0218325	[0.015-0.029] unit decrease	Illumina [13478778] (imputed)	N
767	chr12	23899592	23899593	rs4399402	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12p12.1	SOX5	rs4399402-?	NR	7E-9		0.02834	[0.019-0.038] unit increase novel	Illumina [6108953] (imputed)	N
767	chr12	23899592	23899593	rs4399402	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	12p12.1	SOX5	rs4399402-?	NR	6E-9		0.02775	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
767	chr12	23923619	23923620	rs4293213	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	12p12.1		rs4293213-?	NR	1E-5				Illumina [1365315]	N
767	chr12	23946145	23946146	rs11047102	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12p12.1	SOX5	rs11047102-?	0.10	5E-6	(IcSSc)	1.24	[1.13-1.35]	Illumina [NR] (imputed)	N
767	chr12	23946145	23946146	rs11047102	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12p12.1	SOX5	rs11047102-?	0.10	1E-7	(ACA positive)	1.36	[1.21-1.52]	Illumina [NR] (imputed)	N
767	chr12	23947736	23947737	rs4074723	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	12p12.1	NR	rs4074723-C	NR	3E-9		1.0309278		NR [NR] (imputed)	N
767	chr12	23947736	23947737	rs4074723	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	12p12.1	SOX5	rs4074723-C	0.59	3E-8		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
767	chr12	23959588	23959589	rs10842226	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	12p12.1		rs10842226-A	0.4199	5E-10		1.0424774	[1.028877334-1.056257245]	Affymetrix, Illumina [NR] (imputed)	N
767	chr12	23960176	23960177	rs7968921	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	12p12.1		rs7968921-?	NR	9E-9				NR [8243736]	N
767	chr12	23960176	23960177	rs7968921	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12p12.1	SOX5	rs7968921-?		5E-8				NR [6786993] (imputed)	N
767	chr12	23962438	23962439	rs7969590	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p12.1		rs7969590-A	0.58373	1E-5		0.030035	[0.017-0.043] unit increase	Affymetrix [15580782] (imputed)	N
767	chr12	23974910	23974911	rs7303462	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	12p12.1	SOX5	rs7303462-?	NR	5E-8			[NR]	NR [NR] (imputed)	N
767	chr12	23975218	23975219	rs12310519	30261039	Suri P	2018-09-27	PLoS Genet	Genome-wide meta-analysis of 158,000 individuals of European ancestry identifies three loci associated with chronic back pain.	Chronic back pain	29,531 European ancestry cases, 128,494 European ancestry controls	50,915 British ancestry cases, 232,837 British ancestry controls	12p12.1	SOX5	rs12310519-T	0.16	5E-19		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 9775703] (imputed)	N
767	chr12	23979790	23979791	rs9971729	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	12p12.1		rs9971729-C	0.566	5E-27	(EA)	0.082	[0.067-0.097] unit increase	Illumina [11532091] (imputed)	N
767	chr12	23979790	23979791	rs9971729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12p12.1		rs9971729-?	NR	2E-20				NR [~ 8900000] (imputed)	N
767	chr12	23986028	23986029	rs10842231	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12p12.1	SOX5	rs10842231-A	0.916952	8E-9		0.0144323	[0.0095-0.0193] unit decrease	Affymetrix [12370749]	N
768	chr12	23987924	23987925	rs78337797	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12p12.1	SOX5	rs78337797-?		5E-8				NR [6786993] (imputed)	N
768	chr12	23987924	23987925	rs78337797	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	12p12.1	NR	rs78337797-T	0.8781	1E-11		1.023	[1.016-1.03]	NR [8098588] (imputed)	N
768	chr12	23996141	23996142	rs35279483	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p12.1	SOX5	rs35279483-CA	0.5987	7E-6		0.0313	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
768	chr12	23997230	23997231	rs12818673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs12818673-?	NR	2E-40				NR [~ 8900000] (imputed)	N
768	chr12	24002124	24002125	rs16926778	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12p12.1	NA	rs16926778-C	0.0771	2E-13		0.0234	[0.017-0.03] unit increase	NR [~ 27400000] (imputed)	N
768	chr12	24003407	24003408	rs143417316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p12.1		rs143417316-T	NR	2E-21		0.0161	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
768	chr12	24006405	24006406	rs16926789	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	12p12.1	SOX5	rs16926789-A	0.894622222	8E-6		0.05099356	[0.029-0.073] unit decrease	Illumina [1632371] (imputed)	N
768	chr12	24008434	24008435	rs11047132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12p12.1	NR	rs11047132-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
768	chr12	24008434	24008435	rs11047132	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12p12.1	NA	rs11047132-T	0.9179	2E-13		0.0227	[0.017-0.029] unit decrease	NR [~ 27400000] (imputed)	N
768	chr12	24010037	24010038	rs112137861	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Follicle stimulating hormone levels in polycystic ovary syndrome	647 European ancestry cases	606 European ancestry cases	12p12.1	intergenic	rs112137861-A	0.05	3E-7		0.08	[0.041-0.119] log10(mIU/mL) increase	Illumina [at least 624044] (imputed)	N
768	chr12	24021088	24021089	rs11047139	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p12.1	NR	rs11047139-C	0.780339	1E-10		0.0147409	[0.01-0.019] unit decrease	NR [NR]	N
768	chr12	24053731	24053732	rs4267163	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12p12.1	NR	rs4267163-A	NR	3E-8		5.55	z score increase	Affymetrix [10847151] (imputed)	N
768	chr12	24058134	24058135	rs10771041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p12.1		rs10771041-T	NR	3E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
768	chr12	24060074	24060075	rs10842240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p12.1		rs10842240-?	NR	2E-13				NR [~ 8900000] (imputed)	N
768	chr12	24060731	24060732	rs12581677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12p12.1		rs12581677-G	NR	3E-8		0.0201	[0.013-0.027] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
768	chr12	24066936	24066937	rs12811046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12p12.1		rs12811046-?	NR	5E-13				NR [~ 8900000] (imputed)	N
768	chr12	24071747	24071748	rs7134283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p12.1		rs7134283-A	NR	1E-11		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
768	chr12	24075006	24075007	rs74996610	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12p12.1	NR	rs74996610-?		4E-9		0.0305519	[0.02-0.041] unit decrease	Affymetrix [19400418] (imputed)	N
768	chr12	24075507	24075508	rs7970953	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12p12.1	NR	rs7970953-G	NR	7E-8		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
768	chr12	24075507	24075508	rs7970953	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12p12.1	MIR920	rs7970953-A	0.297713613941833	2E-8		0.01671289	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
768	chr12	24075507	24075508	rs7970953	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12p12.1	SOX5	rs7970953-A	0.299	6E-6	(EA)	0.015	[0.0086-0.0216] kg/m2 increase	Affymetrix, Illumina [2550021]	N
768	chr12	24077508	24077509	rs17399946	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	12p12.1	SOX5	rs17399946-?	NR	7E-6	(multivariate)			Perlegen [1871025] (imputed)	N
768	chr12	24077865	24077866	rs4581549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12p12.1	NR	rs4581549-T	0.117213024219302	1E-9		0.00863027	[0.0058-0.0114] unit decrease	NR [NR]	N
768	chr12	24077865	24077866	rs4581549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12p12.1	NR	rs4581549-T	0.117213024219302	2E-9		0.010566696	[0.0071-0.014] unit decrease	NR [NR]	N
768	chr12	24077865	24077866	rs4581549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12p12.1	NR	rs4581549-T	0.117213024219302	1E-9		0.013776805	[0.0093-0.0182] unit decrease	NR [NR]	N
768	chr12	24077865	24077866	rs4581549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12p12.1	NR	rs4581549-T	0.117213024219302	4E-9		0.011241104	[0.0075-0.015] unit decrease	NR [NR]	N
768	chr12	24077865	24077866	rs4581549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12p12.1	NR	rs4581549-T	0.117213024219302	2E-9		0.008780736	[0.0059-0.0116] unit decrease	NR [NR]	N
768	chr12	24089321	24089322	rs11611435	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12p12.1		rs11611435-T	0.5528	4E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
768	chr12	24089321	24089322	rs11611435	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p12.1	SOX5	rs11611435-T	0.5561	7E-11		1.02819		Affymetrix [11880941] (imputed)	N
768	chr12	24090003	24090004	rs4517619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p12.1		rs4517619-G	NR	2E-8		0.0395	[0.026-0.053] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
768	chr12	24107596	24107597	rs7314326	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p12.1	NR	rs7314326-A	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
769	chr12	24138389	24138390	rs17401474	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12p12.1		rs17401474-C	0.03976	3E-6		2.722	[1.793-4.13399999999999]	Affymetrix [7975321] (imputed)	N
769	chr12	24144589	24144590	rs1948662	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p12.1	SOX5	rs1948662-T	0.734	6E-7		0.0394	[0.024-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
769	chr12	24150440	24150441	rs2900528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p12.1	NR	rs2900528-C	0.41713999999999996	2E-12		0.00589584	[0.0042-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
769	chr12	24150440	24150441	rs2900528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p12.1	NR	rs2900528-C	0.41713999999999996	2E-10		0.00579763	[0.0039-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
769	chr12	24156828	24156829	rs11047198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs11047198-T	0.481909	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
769	chr12	24156828	24156829	rs11047198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12p12.1	NR	rs11047198-T	0.539336	2E-12		0.013086	[0.0094-0.0167] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
769	chr12	24156828	24156829	rs11047198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs11047198-T	0.483891	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
769	chr12	24156828	24156829	rs11047198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12p12.1	NR	rs11047198-T	0.539427	4E-10		0.011653	[0.008-0.0153] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
769	chr12	24166425	24166426	rs989657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs989657-?	NR	4E-8				NR [~ 8900000] (imputed)	N
769	chr12	24168710	24168711	rs11047209	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12p12.1		rs11047209-G	0.745	1E-12		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
769	chr12	24172259	24172260	rs17481131	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	12p12.1	NR	rs17481131-?		8E-9				NR [520857]	N
769	chr12	24180306	24180307	rs1353792	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p12.1	NR	rs1353792-A	0.760646	8E-15		0.0176553	[0.013-0.022] unit decrease	NR [NR]	N
769	chr12	24180585	24180586	rs1909350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p12.1		rs1909350-?	NR	2E-11				NR [~ 8900000] (imputed)	N
769	chr12	24183718	24183719	rs148276751	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p12.1	NR	rs148276751-G	0.01045	2E-8	(CPQ)	0.02599	NR unit increase	Illumina [1671387] (imputed)	N
769	chr12	24184543	24184544	rs10842262	22197933	Hu Z	2011-12-25	Nat Genet	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls	1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls	12p12.1	SOX5	rs10842262-?	NR	2E-9		1.23	[1.15-1.32]	Affymetrix [587347]	N
769	chr12	24195041	24195042	rs11047224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p12.1	NR	rs11047224-C	0.035733	6E-17		0.043402	[0.033-0.054] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
769	chr12	24195047	24195048	rs1995181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p12.1		rs1995181-A	0.4598	4E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
769	chr12	24195586	24195587	rs11047225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SOX5	rs11047225-T	NR	2E-8		0.0159444	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
769	chr12	24195586	24195587	rs11047225	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p12.1	SOX5	rs11047225-T	0.4691	4E-10		0.0118	[0.0081-0.0155] unit decrease	Affymetrix [18391927] (imputed)	N
769	chr12	24195586	24195587	rs11047225	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p12.1	Intergenic	rs11047225-T	0.4622	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
769	chr12	24195797	24195798	rs12300845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p12.1		rs12300845-T	NR	8E-18		0.058	[0.045-0.071] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
769	chr12	24197222	24197222	rs35179240	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12p12.1	SOX5	rs35179240-T	0.560948	2E-10		0.0132841	[0.0092-0.0174] unit increase	NR [16516521] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p12.1		rs10083137-G	0.035091	8E-13		0.0429199	[0.032-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p12.1		rs10083137-G	0.035083	4E-13		0.04344492	[0.032-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs10083137-G	0.0377726	6E-16				Affymetrix, Illumina [24246363] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p12.1	NR	rs10083137-G	0.036189	7E-17		0.040566	[0.031-0.05] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs10083137-G	0.0370827	2E-15				Affymetrix, Illumina [20825802] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p12.1	NR	rs10083137-A	0.965467	9E-14		0.020164	[0.014-0.026] unit increase	Affymetrix [16582621] (imputed)	N
769	chr12	24198177	24198178	rs10083137	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p12.1	NR	rs10083137-A	0.965467	4E-11		0.0197936	[0.013-0.026] unit increase	Affymetrix [16582614] (imputed)	N
769	chr12	24198177	24198178	rs10083137	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p12.1	NR	rs10083137-A	0.96554	5E-20		0.0512667	[0.04-0.062] unit increase	NR [NR]	N
769	chr12	24198233	24198234	rs76504223	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p12.1	SOX5	rs76504223-A	0.913865	1E-10		0.0210732	[0.015-0.027] unit increase	NR [13737936] (imputed)	N
769	chr12	24198233	24198234	rs76504223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p12.1		rs76504223-?	NR	2E-12				NR [~ 8900000] (imputed)	N
769	chr12	24198233	24198234	rs76504223	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p12.1		rs76504223-?	NR	3E-10		0.0223987	[0.015-0.03] unit increase	Affymetrix [20259828] (imputed)	N
769	chr12	24198566	24198567	rs10083142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12p12.1		rs10083142-T	NR	2E-15		0.0492	[0.037-0.061] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
769	chr12	24198831	24198831	rs71450738	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	12p12.1	SOX5	rs71450738-T	NR	2E-6	(females)	0.118	[0.069-0.167] unit decrease	Illumina [7531543] (imputed)	N
769	chr12	24199206	24199206	rs780726911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p12.1	SOX5	rs780726911-AC	NR	1E-8		0.0176086	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
769	chr12	24203095	24203096	rs1391790	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p12.1	NR	rs1391790-T	0.9641562	2E-30		0.0254121	[0.021-0.03] unit increase	Affymetrix [16582909] (imputed)	N
769	chr12	24203095	24203096	rs1391790	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p12.1	NR	rs1391790-T	0.9641562	4E-26		0.0259992	[0.021-0.031] unit increase	Affymetrix [16582965] (imputed)	N
769	chr12	24206325	24206326	rs11047237	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p12.1	NR	rs11047237-A	0.965318	8E-17		0.0275313	[0.021-0.034] unit increase	Affymetrix [16585854] (imputed)	N
769	chr12	24206325	24206326	rs11047237	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p12.1	NR	rs11047237-A	0.965318	3E-14		0.0297089	[0.022-0.037] unit increase	Affymetrix [16585866] (imputed)	N
769	chr12	24210598	24210599	rs7976167	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p12.1	SOX5	rs7976167-T	0.6858	7E-10		0.1638	[0.11-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
769	chr12	24210675	24210676	rs138229006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p12.1		rs138229006-C	NR	1E-10		0.048	[0.033-0.063] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
769	chr12	24210675	24210676	rs138229006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12p12.1		rs138229006-C	NR	3E-10		0.0468	[0.032-0.061] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
769	chr12	24211258	24211259	rs7958678	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12p12.1	TNIK	rs7958678-?		2E-12				NR [7428630] (imputed)	N
769	chr12	24217108	24217109	rs12322111	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p12.1	NR	rs12322111-?		2E-16				NR [7428630] (imputed)	N
769	chr12	24218595	24218596	rs145718162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p12.1		rs145718162-G	NR	4E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
769	chr12	24223491	24223492	rs117453824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs117453824-T	NR	1E-11		0.0673	[0.048-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr12	24223491	24223492	rs117453824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12p12.1	NR	rs117453824-T	NR	6E-10		0.0613	[0.042-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr12	24233478	24233479	rs11047249	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12p12.1	NA	rs11047249-G		4E-8		0.0102554	[0.0066-0.0139] unit increase	Illumina [13288253] (imputed)	N
769	chr12	24234000	24234001	rs7296101	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	12p12.1		rs7296101-G	0.4	3E-6				NR [13131314] (imputed)	N
769	chr12	24234000	24234001	rs7296101	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p12.1		rs7296101-G	0.4	8E-60		16.31	z score increase	Affymetrix [9061022] (imputed)	N
769	chr12	24234000	24234001	rs7296101	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p12.1		rs7296101-G	0.4	2E-29		11.26	z score increase	Affymetrix [9061022] (imputed)	N
769	chr12	24234000	24234001	rs7296101	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	12p12.1		rs7296101-?	NR	9E-18				NR [9705931] (imputed)	N
769	chr12	24235714	24235715	rs10842272	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p12.1		rs10842272-G	0.41	4E-18		8.67	z score increase	Affymetrix [9061022] (imputed)	N
769	chr12	24235714	24235715	rs10842272	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p12.1	NR	rs10842272-G	0.3935	1E-17				NR [9056863] (imputed)	N
769	chr12	24235714	24235715	rs10842272	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p12.1	NR	rs10842272-G	0.3935	1E-17				NR [9056863] (imputed)	N
770	chr12	24257227	24257228	rs11047261	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12p12.1	NR	rs11047261-G	0.041383999999999976	6E-9		0.0366187	[0.024-0.049] unit increase	Affymetrix [16585745] (imputed)	N
770	chr12	24260883	24260884	rs12313817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12p12.1	NR	rs12313817-A	NR	8E-15		0.0471	[0.035-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr12	24260883	24260884	rs12313817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs12313817-A	NR	2E-13		0.0468	[0.034-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr12	24260883	24260884	rs12313817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12p12.1	NR	rs12313817-A	NR	9E-15		0.047	[0.035-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr12	24278820	24278821	rs7979575	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	12p12.1	FLJ32894, BCAT1, SOX5	rs7979575-C	0.16	2E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
770	chr12	24279584	24279585	rs17487383	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	12p12.1	NR	rs17487383-?		4E-8				NR [11140414]	N
770	chr12	24279584	24279585	rs17487383	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12p12.1	NR	rs17487383-C	NR	4E-8		5.502	z score decrease	Affymetrix [10847151] (imputed)	N
770	chr12	24288440	24288441	rs148034983	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	12p12.1	MIR920	rs148034983-C	NR	3E-6		0.901	[0.862- 0.941]	Illumina [6740241] (imputed)	N
770	chr12	24289365	24289366	rs7973572	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	12p12.1	SOX5	rs7973572-C	0.07	3E-6		1.29	[NR]	Illumina [522285]	N
770	chr12	24324150	24324151	rs12369876	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12p12.1		rs12369876-T	0.7935	7E-6		0.037813	[0.021-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
770	chr12	24339699	24339700	rs7969854	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12p12.1		rs7969854-C	0.50661	8E-6		0.029895	[0.017-0.043] unit decrease	Affymetrix [15580782] (imputed)	N
770	chr12	24373827	24373828	rs2686335	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p12.1	Intergenic	rs2686335-T	0.8496	3E-8	(MTAG)	0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
770	chr12	24373827	24373828	rs2686335	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12p12.1	Intergenic	rs2686335-C	0.1504	1E-8		0.0154	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
771	chr12	24389659	24389660	rs1464500	26422391	Yellin JL	2015-09-28	J Pediatr Orthop	Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.	Juvenile osteochondritis dissecans	209 European ancestry cases, 1,855 European ancestry controls	NA	12p12.1	SOX5	rs1464500-?		3E-6		1.65	[NR]	Illumina [NR]	N
771	chr12	24389659	24389660	rs1464500	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	12p12.1	SOX5	rs1464500-?	0.232	1E-7	(perphenazine-HDL)			Affymetrix [492900]	N
771	chr12	24394371	24394372	rs1522232	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	12p12.1	SOX5	rs1522232-C	0.52	2E-6		2.22	[1.59-3.13]	Illumina [291119]	N
771	chr12	24396196	24396197	rs74068466	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	12p12.1		rs74068466-A	0.919492	4E-6		0.0237028	[0.013-0.034] unit decrease	Illumina [13900000] (imputed)	N
771	chr12	24401199	24401200	rs997479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p12.1	NR	rs997479-?	NR	4E-6		0.0080841	[0.0046-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
771	chr12	24438590	24438591	rs563110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p12.1		rs563110-?	NR	2E-17				NR [~ 8900000] (imputed)	N
771	chr12	24439660	24439661	rs4579999	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12p12.1	intergenic	rs4579999-?	0.4662	3E-13		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
772	chr12	24513700	24513701	rs11047395	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12p12.1	NR	rs11047395-G	0.0354	2E-6		0.2639	[0.16-0.37] unit increase	Illumina [up to 1980188] (imputed)	N
772	chr12	24559369	24559370	rs10743498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12p12.1		rs10743498-C	NR	4E-15		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
772	chr12	24576858	24576859	rs1396206	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12p12.1		rs1396206-?	NR	2E-9		0.0124677	[0.0084-0.0165] unit increase	NR [6912294] (imputed)	N
772	chr12	24576858	24576859	rs1396206	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	12p12.1	SOX5	rs1396206-A	0.482	5E-19		0.055	[0.043-0.067] unit increase	NR [~ 9000000] (imputed)	N
772	chr12	24576858	24576859	rs1396206	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	12p12.1	SOX5	rs1396206-A	0.482	1E-16		0.04	[0.03-0.05] unit increase	NR [~ 9000000] (imputed)	N
772	chr12	24581146	24581146	rs202149107	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12p12.1	SOX5	rs202149107-C	0.806333	1E-8		0.0160528	[0.011-0.021] unit decrease	NR [16516521] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	9E-50	(228 ms)	0.0797246	[0.069-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	9E-35	(194 ms)	0.064632	[0.054-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	8E-47	(224 ms)	0.0768863	[0.066-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	8E-45	(220 ms)	0.0751926	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	8E-38	(200 ms)	0.0675134	[0.057-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	7E-45	(262 ms)	0.0780515	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	7E-12	(60 ms)	0.03894	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-54	(250 ms)	0.084794	[0.074-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-54	(244 ms)	0.0840413	[0.073-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-53	(246 ms)	0.0836063	[0.073-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-51	(254 ms)	0.0827365	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-34	(176 ms)	0.0637328	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-32	(188 ms)	0.0622302	[0.051-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-27	(172 ms)	0.0566033	[0.046-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-23	(140 ms)	0.0512031	[0.04-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	6E-19	(114 ms)	0.047872	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	5E-8	(50 ms)	0.0304055	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	5E-31	(174 ms)	0.0612249	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	5E-11	(58 ms)	0.0364871	[0.026-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-9	(48 ms)	0.0327932	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-9	(388 ms)	0.0330999	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-51	(256 ms)	0.0832635	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-39	(206 ms)	0.0686481	[0.058-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-31	(186 ms)	0.0609404	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-31	(180 ms)	0.0604198	[0.05-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-30	(168 ms)	0.0590456	[0.048-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-28	(170 ms)	0.0575282	[0.047-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-27	(158 ms)	0.0569185	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-24	(142 ms)	0.0530333	[0.042-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-22	(130 ms)	0.0517419	[0.041-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	4E-18	(116 ms)	0.0466919	[0.036-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-9	(386 ms)	0.0333037	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-8	(52 ms)	0.0310309	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-49	(258 ms)	0.0819037	[0.071-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-49	(230 ms)	0.0796003	[0.069-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-44	(218 ms)	0.0747162	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-42	(216 ms)	0.0728344	[0.062-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-38	(204 ms)	0.0679469	[0.057-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-37	(202 ms)	0.067208	[0.056-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-31	(178 ms)	0.0607007	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	3E-24	(128 ms)	0.0541906	[0.043-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-9	(54 ms)	0.033364	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-9	(46 ms)	0.0333427	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-54	(248 ms)	0.0848983	[0.074-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-53	(240 ms)	0.0830807	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-53	(238 ms)	0.0830045	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-53	(236 ms)	0.0829535	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-46	(222 ms)	0.076327	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-43	(264 ms)	0.0769704	[0.066-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-40	(210 ms)	0.0703268	[0.059-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-39	(208 ms)	0.069579	[0.059-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-37	(198 ms)	0.0669775	[0.056-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-35	(196 ms)	0.065534	[0.055-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-35	(192 ms)	0.0651039	[0.054-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-21	(138 ms)	0.0493389	[0.039-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-15	(76 ms)	0.0437397	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	2E-10	(56 ms)	0.0353257	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-52	(234 ms)	0.081932	[0.071-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-51	(252 ms)	0.083067	[0.072-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-48	(226 ms)	0.0784092	[0.068-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-46	(260 ms)	0.0795599	[0.069-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-40	(214 ms)	0.0712596	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-40	(212 ms)	0.0709506	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-34	(190 ms)	0.065141	[0.054-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-34	(182 ms)	0.064253	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-29	(166 ms)	0.058582	[0.048-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-27	(154 ms)	0.0566869	[0.046-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-24	(144 ms)	0.0537599	[0.043-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs7307613-C	0.494765	1E-23	(146 ms)	0.0525737	[0.042-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	12p12.1	SOX5	rs7307613-C	0.505	4E-19		0.05	[0.038-0.062] unit increase	NR [~ 9000000] (imputed)	N
772	chr12	24595191	24595192	rs7307613	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	12p12.1	SOX5	rs7307613-C	0.505	3E-12		0.039	[0.027-0.051] unit increase	NR [~ 9000000] (imputed)	N
772	chr12	24601047	24601048	rs11047447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12p12.1		rs11047447-?	NR	1E-11				NR [~ 8900000] (imputed)	N
772	chr12	24621347	24621348	rs10842356	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12p12.1	BCAT1	rs10842356-A	0.484602	4E-9		0.00823376	[0.0055-0.011] unit increase	Affymetrix [12370749]	N
773	chr12	24701865	24701866	rs6487394	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p12.1		rs6487394-G	0.43	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
773	chr12	24705337	24705338	rs10743502	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p12.1	NR	rs10743502-A	0.3603	6E-14				NR [9056863] (imputed)	N
773	chr12	24710423	24710424	rs11047498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p12.1		rs11047498-T	0.42	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
773	chr12	24710423	24710424	rs11047498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p12.1		rs11047498-T	0.42	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
773	chr12	24710423	24710424	rs11047498	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12p12.1	BCAT1	rs11047498-T	0.3872	2E-8		0.011230925	[0.0073-0.0151] unit decrease	Illumina [9339358] (imputed)	N
773	chr12	24715047	24715048	rs2291437	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12p12.1	LINC00477	rs2291437-G	0.105	2E-17		1.09	[1.07-1.12]	Illumina [34740186] (imputed)	N
773	chr12	24733322	24733323	rs398076497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12p12.1		rs398076497-G	NR	2E-8		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
773	chr12	24734127	24734128	rs12303711	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12p12.1	NR	rs12303711-A	NR	7E-6	(GEE model)	0.82933	[0.47-1.19] unit increase	NR [NR] (imputed)	N
773	chr12	24737060	24737061	rs7969489	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12p12.1	NR	rs7969489-A	0.119	8E-10		0.0103066	[0.007-0.0136] unit decrease	NR [9732723] (imputed)	N
773	chr12	24744133	24744134	rs34103124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p12.1		rs34103124-G	NR	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
773	chr12	24750886	24750886	rs11387032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p12.1		rs11387032-TA	NR	8E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
773	chr12	24757628	24757629	rs111235435	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12p12.1	intergenic	rs111235435-?	0.3757	5E-9		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
773	chr12	24758479	24758480	rs4963772	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	12p12.1		rs4963772-G	0.85	6E-11		0.009	[0.007-0.011] unit decrease	Affymetrix [8918919] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12p12.1	SOX5	rs4963772-G	0.84974	7E-18		0.770765	[0.6-0.95] unit increase	Affymetrix [~ 7800000] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p12.1	SOX5	rs4963772-G	0.849826	2E-11		0.504237	[0.36-0.65] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850087	1E-26		0.0867931	[0.071-0.103] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850072	1E-28		0.0902844	[0.074-0.106] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850075	2E-22		0.0793647	[0.063-0.095] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850144	2E-19		0.0732455	[0.057-0.089] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850052	1E-19		0.0736413	[0.058-0.09] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	12p12.1	BCAT1	rs4963772-G	0.850053	6E-28		0.0886008	[0.073-0.104] unit decrease	Affymetrix [509255] (imputed)	N
773	chr12	24758479	24758480	rs4963772	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate variability traits (RMSSD)	13,767 Hispanic/Latino individuals	4,730 European ancestry individuals, 2,908 African American individuals	12p12.1	LINC00477	rs4963772-A	0.13	2E-9	(Hispanic)	0.069	[0.045-0.093] unit increase	Affymetrix, Illumina [17209892] (imputed)	N
773	chr12	24758479	24758480	rs4963772	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p12.1	chr12mb24	rs4963772-A	0.15156592	2E-6		0.2103	[0.12-0.3] unit increase	Affymetrix [~ 9800000] (imputed)	N
773	chr12	24758479	24758480	rs4963772	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12p12.1	SOX5	rs4963772-A	0.15	3E-53		0.7139	[0.62-0.81] unit decrease	Affymetrix [19941912] (imputed)	N
773	chr12	24759805	24759806	rs11047526	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	12p12.1	KNOP1P1	rs11047526-G	0.082	7E-6		0.0031	[0.0018-0.0044] unit increase	Affymetrix [1219546] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	9E-9	(-70 ms)	0.0448856	[0.03-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	9E-20	(-116 ms)	0.068587	[0.053-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	9E-14	(-84 ms)	0.0568801	[0.042-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	8E-18	(-96 ms)	0.0647797	[0.05-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	7E-9	(-74 ms)	0.0452556	[0.03-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	7E-22	(-112 ms)	0.0718794	[0.057-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	7E-12	(-80 ms)	0.0527701	[0.037-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	7E-12	(-160 ms)	0.0521003	[0.037-0.067] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	6E-21	(-114 ms)	0.0708011	[0.056-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	6E-15	(-178 ms)	0.0601692	[0.045-0.075] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	6E-15	(-170 ms)	0.0600835	[0.045-0.075] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	5E-15	(-188 ms)	0.0606518	[0.045-0.076] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	5E-12	(-82 ms)	0.0531772	[0.038-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	5E-10	(-158 ms)	0.0471354	[0.032-0.062] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	4E-9	(-72 ms)	0.0459406	[0.031-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	4E-8	(328 ms)	0.043006	[0.028-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	4E-22	(-110 ms)	0.0723007	[0.057-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	4E-16	(-186 ms)	0.0632922	[0.048-0.079] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	3E-9	(298 ms)	0.0456672	[0.03-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	3E-16	(-94 ms)	0.0617357	[0.047-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	3E-14	(-168 ms)	0.058132	[0.043-0.073] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	3E-12	(-78 ms)	0.0538861	[0.039-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-8	(-376 ms)	0.0437226	[0.028-0.059] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-8	(-374 ms)	0.0440501	[0.029-0.059] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-8	(-338 ms)	0.0441078	[0.029-0.059] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-19	(-98 ms)	0.0674059	[0.052-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-19	(-100 ms)	0.0671476	[0.052-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-17	(-184 ms)	0.0664692	[0.051-0.082] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-17	(-182 ms)	0.0658164	[0.051-0.081] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-15	(-88 ms)	0.0601406	[0.045-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-15	(-176 ms)	0.0615237	[0.046-0.077] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-15	(-174 ms)	0.0618293	[0.047-0.077] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-15	(-172 ms)	0.0612272	[0.046-0.076] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-14	(-86 ms)	0.0584384	[0.043-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-14	(-190 ms)	0.0592809	[0.044-0.075] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-13	(-166 ms)	0.0563675	[0.041-0.072] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-10	(-76 ms)	0.0486712	[0.033-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	2E-10	(-314 ms)	0.0497537	[0.034-0.065] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	1E-15	(-180 ms)	0.0623599	[0.047-0.078] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	1E-12	(-164 ms)	0.0545603	[0.039-0.07] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	1E-12	(-162 ms)	0.0542914	[0.039-0.07] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p12.1	BCAT1	rs34219605-A	0.848474	1E-11	(-316 ms)	0.0532379	[0.038-0.069] unit increase	Affymetrix [10000000] (imputed)	N
773	chr12	24760455	24760456	rs34219605	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p12.1	LINC00477	rs34219605-A	0.8531	7E-10		0.1681	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
773	chr12	24762500	24762501	rs11047527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12p12.1		rs11047527-C	NR	4E-17		0.1145	[0.088-0.141] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
773	chr12	24770877	24770878	rs17287293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p12.1		rs17287293-A	0.8517	1E-13		0.15970138	[0.12-0.2] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
773	chr12	24770877	24770878	rs17287293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p12.1		rs17287293-A	0.8517	8E-11		0.12224581	[0.084-0.16] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
773	chr12	24770877	24770878	rs17287293	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	12p12.1	BCAT1	rs17287293-A	0.8508	6E-12		0.197	[0.14-0.25] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
773	chr12	24770877	24770878	rs17287293	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	12p12.1	C12orf67, SOX5	rs17287293-G	0.22	2E-41		2.2	[1.89-2.51] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
773	chr12	24770877	24770878	rs17287293	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12p12.1	LINC00477, C12orf67	rs17287293-A	0.85	3E-20		0.444	[0.32-0.57] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
773	chr12	24770877	24770878	rs17287293	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	12p12.1	intergenic	rs17287293-G	0.15	2E-10		8.6	[6.03-11.17] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
773	chr12	24771966	24771967	rs10842383	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	12p12.1	BCAT1	rs10842383-T	0.144	6E-13		1.882	[1.37-2.4] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
773	chr12	24771966	24771967	rs10842383	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p12.1	LINC00477, BCAT1	rs10842383-C	0.86	1E-25		1.11	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
773	chr12	24771966	24771967	rs10842383	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p12.1	LINC00477, BCAT1	rs10842383-C	0.85	1E-21	(EA)	1.11	[1.09-1.13]	Affymetrix, Illumina [up to 12149979] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	12p12.1	C12orf67, LINC00477	rs10842383-C	0.8654	5E-25		0.124484	[0.099-0.15] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	12p12.1	C12orf67, LINC00477	rs10842383-C	0.8654	1E-25	(EA)	0.124484	[0.099-0.15] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	12p12.1	LINC00477, C12orf67	rs10842383-C	0.863172	9E-31	(EA)	0.049403	[0.041-0.058] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	12p12.1	LINC00477, C12orf67	rs10842383-C	0.863172	8E-33		0.049403	[0.041-0.058] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	12p12.1	LINC00477, C12orf67	rs10842383-C	0.862519	4E-32		0.064678	[0.053-0.076] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
773	chr12	24771966	24771967	rs10842383	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	12p12.1	LINC00477, C12orf67	rs10842383-C	0.862519	2E-29	(EA)	0.064678	[0.053-0.076] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
774	chr12	24776751	24776752	rs137913153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p12.1		rs137913153-G	NR	6E-13		0.0186	[0.014-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
774	chr12	24776751	24776752	rs137913153	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12p12.1	SOX5, C12orf67, LINC00477, BCAT1	rs137913153-A	0.8563	1E-13	(Hispanic/Latino)	2.7717	[2.04-3.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
774	chr12	24776751	24776752	rs137913153	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p12.1	NR	rs137913153-A	0.851894	5E-6	(females)	0.554	[0.32-0.79] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
774	chr12	24776751	24776752	rs137913153	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p12.1	NR	rs137913153-A	0.851894	3E-11	(males)	0.782854	[0.55-1.01] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
774	chr12	24779490	24779491	rs4963776	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12p12.1	LINC00477	rs4963776-G	0.818	2E-25		1.1	[1.08-1.11]	Illumina [34740186] (imputed)	N
774	chr12	24784138	24784139	rs4246224	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	12p12.1	LINC00477	rs4246224-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
774	chr12	24784138	24784139	rs4246224	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12p12.1	SOX5, C12orf67, LINC00477, BCAT1	rs4246224-G	0.8553	2E-138		2.2721	[2.09-2.45] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
774	chr12	24784138	24784139	rs4246224	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p12.1	SOX5	rs4246224-G	0.851	2E-14		0.649	[0.48-0.82] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
774	chr12	24786135	24786136	rs12832485	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	12p12.1	BCAT1	rs12832485-C	0.085	9E-6		0.003	[0.0017-0.0043] unit increase	Affymetrix [1219546] (imputed)	N
774	chr12	24788338	24788339	rs11047543	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	12p12.1	NR	rs11047543-?	NR	3E-17		2.842999	[2.18-3.5] unit decrease	Illumina [26703325] (imputed)	N
774	chr12	24788338	24788339	rs11047543	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	12p12.1	C12orf67, SOX5	rs11047543-A	0.15	3E-13		2.09	[1.53-2.65] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
774	chr12	24808977	24808978	rs34109091	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	12p12.1		rs34109091-A	0.741286603	1E-8		1.0795754	[1.051693197-1.108196731]	Illumina [8919992] (imputed)	N
774	chr12	24813280	24813281	rs4963581	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	12p12.1		rs4963581-A	NR	4E-8		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
774	chr12	24824453	24824454	rs555038100	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12p12.1	RP11-615I16.1	rs555038100-A	0.9974	5E-6		0.3273	[0.19-0.47] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
774	chr12	24834218	24834219	rs11047571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	12p12.1	LINC00477, BCAT1	rs11047571-A	0.0264	7E-6		0.4794	[0.27-0.69] unit decrease	NR [NR] (imputed)	N
774	chr12	24858389	24858390	rs1565122	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	12p12.1	NR	rs1565122-?	NR	7E-6	(genus_Desulfovibrio)	0.5273106	[0.23-0.82] unit decrease	Affymetrix [210924]	N
774	chr12	24862235	24862235	rs34309338	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	12p12.1	intergenic	rs34309338-?	NR	5E-8		0.013526	[0.0087-0.0184] unit increase	Affymetrix [25921788] (imputed)	N
774	chr12	24868506	24868507	rs61914312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12p12.1		rs61914312-?	NR	3E-10				NR [~ 8900000] (imputed)	N
775	chr12	24946536	24946537	rs10505950	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p12.1	LOC196415	rs10505950-?	NR	3E-6	(TAG 56:3)	0.41049016	[0.24-0.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
775	chr12	24990706	24990707	rs7968890	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum volume)	1,048 African American or European ancestry female individuals	NA	12p12.1	BCAT1	rs7968890-G	0.44	6E-7		0.17	[0.11-0.24] unit increase	Affymetrix [up to 9597202] (imputed)	N
775	chr12	25000209	25000210	rs7973974	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	12p12.1	BCAT1	rs7973974-C	NR	3E-6		2.71	[1.78-4.11]	Illumina [NR]	N
776	chr12	25037467	25037468	rs10842422	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	12p12.1	BCAT1	rs10842422-T	0.3213	3E-6		1.0985	[1.05616-1.14253]	Illumina [4946503] (imputed)	N
776	chr12	25081594	25081595	rs7960010	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration	2,704 ever-smoker individuals, 1,728 never-smoker individuals	NA	12p12.1	BCAT1	rs7960010-T	0.1716	8E-6		0.104	[NR] unit decrease	Illumina [658884]	N
776	chr12	25118348	25118349	rs117791138	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	12p12.1	NR	rs117791138-?	NR	1E-6		0.2042	[0.12-0.29] unit increase	Illumina [~ 7800000] (imputed)	N
776	chr12	25140689	25140690	rs59753639	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12p12.1	BRI3P2, LOC196415	rs59753639-C	0.007	5E-6		6.77	[2.62-17.46]	Illumina [1556551]	N
778	chr12	25401875	25401876	rs61759623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs61759623-C	NR	1E-15		0.0547	[0.041-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr12	25407725	25407726	rs12318598	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	12p12.1		rs12318598-A	0.915995	2E-9		0.0447999	[0.03-0.059] unit increase	NR [11722792] (imputed)	N
778	chr12	25407725	25407726	rs12318598	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	12p12.1		rs12318598-A	0.915995	2E-9		0.0448124	[0.03-0.059] unit increase	NR [11722792] (imputed)	N
778	chr12	25407725	25407726	rs12318598	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12p12.1	KRAS	rs12318598-A	0.915735	4E-20		0.0083005	[0.0065-0.0101] unit increase	Affymetrix [13995440] (imputed)	N
778	chr12	25407725	25407726	rs12318598	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p12.1	NR	rs12318598-A	0.915758	3E-11		0.0229614	[0.016-0.03] unit increase	Affymetrix [15000001]	N
778	chr12	25408463	25408464	rs12320328	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12p12.1	NR	rs12320328-G	0.08462	3E-11		0.002646	[0.0018-0.0034] unit decrease	Affymetrix [NR] (imputed)	N
778	chr12	25408463	25408464	rs12320328	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12p12.1	KRAS, LMNTD1	rs12320328-A	0.92	3E-8		5.56	z-score increase	Affymetrix [4312306] (imputed)	N
778	chr12	25408463	25408464	rs12320328	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12p12.1	NR	rs12320328-A	0.915447	2E-16		0.0431479	[0.032-0.054] unit increase	Affymetrix [16577313] (imputed)	N
778	chr12	25408463	25408464	rs12320328	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p12.1	intergenic	rs12320328-A	0.9004	4E-8		0.0216	[0.014-0.029] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
778	chr12	25409068	25409069	rs74758151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12p12.1	NR	rs74758151-G	NR	1E-33		0.0592	[0.05-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr12	25409068	25409069	rs74758151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12p12.1	NR	rs74758151-G	NR	4E-11		0.0322	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr12	25409068	25409069	rs74758151	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p12.1	NR	rs74758151-G	NR	9E-11		0.0302	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p12.1	NR	rs75130744-G	0.928516	7E-72		0.027428	[0.024-0.031] unit increase	Affymetrix [16582909] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p12.1	NR	rs75130744-G	0.928584	4E-31		0.0256682	[0.021-0.03] unit increase	Affymetrix [16585854] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12p12.1	NR	rs75130744-G	0.928426	3E-44		0.029453	[0.025-0.034] unit increase	Affymetrix [16582621] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p12.1	NR	rs75130744-G	0.928516	4E-58		0.0277621	[0.024-0.031] unit increase	Affymetrix [16582965] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12p12.1	NR	rs75130744-G	0.928584	1E-23		0.0261357	[0.021-0.032] unit increase	Affymetrix [16585866] (imputed)	N
778	chr12	25410740	25410741	rs75130744	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12p12.1	NR	rs75130744-G	0.928426	3E-39		0.0296028	[0.025-0.034] unit increase	Affymetrix [16582614] (imputed)	N
778	chr12	25412037	25412038	rs78444263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12p12.1		rs78444263-T	NR	2E-13		0.0352	[0.026-0.045] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
778	chr12	25414407	25414408	rs17389465	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	12p12.1		rs17389465-T	0.928784	3E-9		0.0478163	[0.032-0.064] unit increase	NR [11722792] (imputed)	N
778	chr12	25414407	25414408	rs17389465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12p12.1		rs17389465-A	NR	1E-11		0.0291	[0.021-0.038] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
778	chr12	25422716	25422717	rs7313581	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p12.1	NR	rs7313581-?		5E-6				Illumina [4322238] (imputed)	N
778	chr12	25422716	25422717	rs7313581	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12p12.1	Intergenic	rs7313581-T	0.218	8E-7	(liability model)	0.09	[0.051-0.129] unit increase	NR [19725427] (imputed)	N
779	chr12	25444445	25444446	rs566738724	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	12p12.1		rs566738724-C	9.114E-4	8E-11		0.7	[0.49-0.91] unit increase	NR [11842647] (imputed)	N
779	chr12	25450815	25450816	rs7137301	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	12p12.1	KRAS, IFLTD1	rs7137301-T	0.453	6E-7		0.068	[0.041-0.095] unit increase	Illumina [11942402] (imputed)	N
779	chr12	25453249	25453250	rs10771199	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12p12.1	NR	rs10771199-A	0.412	3E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
779	chr12	25484192	25484193	rs7965364	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	12p12.1	BCAT1	rs7965364-T	0.37	6E-6	(AA-glucose response)	3.79	[2.14-5.44] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
779	chr12	25517184	25517185	rs113065354	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	12p12.1	LMNTD1	rs113065354-?		6E-6	(dominant)	0.237	[-0.53916-1.01316] unit decrease	Illumina [1492601] (imputed)	N
779	chr12	25517184	25517185	rs113065354	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	12p12.1	LMNTD1	rs113065354-?		2E-6	(additive)	0.234	[0.14-0.33] unit decrease	Illumina [1492601] (imputed)	N
779	chr12	25525052	25525053	rs58489179	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	12p12.1	NR	rs58489179-G	0.91	3E-6		0.03	[0.016-0.044] unit increase	Affymetrix, Illumina [7369691] (imputed)	N
779	chr12	25525052	25525053	rs58489179	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	12p12.1	NR	rs58489179-G	0.91	5E-8		0.02	[0.012-0.028] unit increase	NR [7369691] (imputed)	N
780	chr12	25594507	25594508	rs59650028	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	12p12.1		rs59650028-?	NR	9E-6		0.883695	[0.83-0.94]	NR [685523]	N
780	chr12	25617157	25617158	rs73296436	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	12p12.1	KRAS, LMNTD1	rs73296436-A	0.11	3E-6		1.4		Illumina [8974355] (imputed)	N
781	chr12	25703515	25703516	rs537956454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	12p12.1		rs537956454-G	0.011892	3E-8		0.127415	[0.082-0.172] unit decrease	Illumina [13471440] (imputed)	N
781	chr12	25703515	25703516	rs537956454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p12.1		rs537956454-G	NR	3E-8		0.1274	[0.082-0.172] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
781	chr12	25771072	25771073	rs1877144	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary volume	6,462 European ancestry individuals	NA	12p12.1	LMNTD1	rs1877144-A	0.71	5E-6		0.13	NR unit decrease	NR [NR] (imputed)	N
781	chr12	25807307	25807308	rs6487504	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	226 European ancestry cases, 143 Hispanic cases, 431 European ancestry controls, 394 Hispanic controls	71 European ancestry cases, 83 Hispanic cases, 192 European ancestry controls, 239 Hispanic controls	12p12.1	IFLTD1	rs6487504-A		2E-7		1.81	[1.40-2.30]	Illumina [696317]	N
783	chr12	26013282	26013283	rs1462717	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	12p12.1	RP11-443N24.3	rs1462717-T	NR	5E-6		1.3512	NR	Illumina [up to 4495750] (imputed)	N
783	chr12	26043524	26043525	rs7298011	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	12p12.1	RASSF8	rs7298011-A	NR	4E-6		1.62	[1.32-1.99]	Illumina [up to 294091]	N
783	chr12	26058602	26058603	rs117640426	29237688	Weng LC	2017-12-01	Circ Cardiovasc Genet	Heritability of Atrial Fibrillation.	Atrial fibrillation	2,987 European ancestry cases, 117,299 European ancestry controls	NA	12p12.1	RASSF8	rs117640426-C	0.01	9E-9		1.7	[1.42-2.03]	Affymetrix [8325606] (imputed)	N
784	chr12	26118171	26118172	rs853656	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12p12.1	Intergenic	rs853656-T	0.167	4E-6	(liability model)	0.09	[0.051-0.129] unit decrease	NR [19725427] (imputed)	N
784	chr12	26122198	26122199	rs10771251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs10771251-?	NR	1E-11				NR [~ 8900000] (imputed)	N
784	chr12	26181127	26181127	rs753883229	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 233)	19,670 European ancestry individuals	NA	12p12.1		rs753883229-?,rs753883229-?	NR	2E-8				NR [9705931] (imputed)	N
784	chr12	26181127	26181127	rs753883229	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 233)	19,670 European ancestry individuals	NA	12p12.1		rs753883229-?,rs753883229-?	NR	2E-8				NR [9705931] (imputed)	N
785	chr12	26223667	26223668	rs2271483	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p12.1	RASSF8	rs2271483-T	0.554412	4E-11		0.0123184	[0.0087-0.016] unit decrease	NR [13737936] (imputed)	N
785	chr12	26224436	26224437	rs143853626	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	12p12.1		rs143853626-?	NR	7E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
785	chr12	26227683	26227684	rs7138742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p12.1		rs7138742-?	NR	1E-12				NR [~ 8900000] (imputed)	N
785	chr12	26259918	26259919	rs10842675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs10842675-A	NR	2E-15		0.0234302	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
785	chr12	26259918	26259919	rs10842675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs10842675-A	NR	3E-14		0.0224555	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
785	chr12	26259918	26259919	rs10842675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs10842675-A	NR	1E-10		0.0198268	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
785	chr12	26259918	26259919	rs10842675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs10842675-A	NR	1E-10		0.0189509	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
785	chr12	26265750	26265751	rs7978072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs7978072-G	NR	2E-11		0.0191099	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26265750	26265751	rs7978072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs7978072-G	NR	1E-10		0.0184696	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26265750	26265751	rs7978072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs7978072-G	NR	5E-13		0.0214191	[0.016-0.027] unit increase	Affymetrix [321788] (imputed)	N
785	chr12	26265750	26265751	rs7978072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs7978072-G	NR	2E-13		0.0209829	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
785	chr12	26266021	26266022	rs6487531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p12.1		rs6487531-T	0.596401	1E-10		0.014725917	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr12	26268952	26268953	rs2880527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs2880527-A	NR	1E-8		0.0253394	[0.017-0.034] unit increase	Affymetrix [321788] (imputed)	N
785	chr12	26268952	26268953	rs2880527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41	rs2880527-A	NR	4E-8		0.0234882	[0.015-0.032] unit increase	Affymetrix [321016] (imputed)	N
785	chr12	26276231	26276232	rs77757339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	BHLHE41, SSPN	rs77757339-T	NR	3E-9		0.0696113	[0.047-0.093] unit increase	Affymetrix [319769] (imputed)	N
785	chr12	26276231	26276232	rs77757339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	BHLHE41, SSPN	rs77757339-T	NR	3E-9		0.0696187	[0.047-0.093] unit increase	Affymetrix [319769] (imputed)	N
785	chr12	26277893	26277903	rs200855945	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion and depression	2,675 European ancestry responder cases, 191,986 European ancestry healthy controls	NA	12p12.1	BHLHE41	rs200855945-?		4E-7		4.929	[2.35-10.34]	Illumina [~ 12000000] (imputed)	N
785	chr12	26278078	26278079	rs1383116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12p12.1		rs1383116-?	NR	3E-11				NR [~ 8900000] (imputed)	N
785	chr12	26286350	26286351	rs75719904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	12p12.1		rs75719904-A	0.980735	2E-8		0.0837236	[0.055-0.113] unit increase	NR [11722792] (imputed)	N
785	chr12	26286350	26286351	rs75719904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12p12.1		rs75719904-A	0.980735	5E-8		0.0817309	[0.052-0.111] unit increase	NR [11722792] (imputed)	N
785	chr12	26296253	26296254	rs6487532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs6487532-G	NR	2E-9		0.0191794	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
785	chr12	26296253	26296254	rs6487532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs6487532-G	NR	2E-8		0.0172031	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
785	chr12	26306483	26306484	rs78518764	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12p12.1	SSPN	rs78518764-T	0.86	2E-10		0.61	[0.41-0.81] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
785	chr12	26306483	26306484	rs78518764	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12p12.1	SSPN	rs78518764-T	0.8537	1E-9		0.5921	[0.4-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
785	chr12	26313848	26313849	rs1842323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs1842323-T	NR	3E-8		0.0157423	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
785	chr12	26320655	26320656	rs10842685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12p12.1		rs10842685-T	NR	1E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
785	chr12	26320655	26320656	rs10842685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12p12.1		rs10842685-T	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
785	chr12	26320655	26320656	rs10842685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs10842685-C	NR	4E-11		0.0186557	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26320655	26320656	rs10842685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs10842685-C	NR	1E-10		0.0181726	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26339730	26339731	rs7955859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs7955859-T	NR	4E-9		0.0184287	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26339730	26339731	rs7955859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs7955859-T	NR	7E-9		0.0181004	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
785	chr12	26339985	26339986	rs11048425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs11048425-G	0.477652	7E-12				Affymetrix, Illumina [24649327] (imputed)	N
785	chr12	26339985	26339986	rs11048425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12p12.1	NR	rs11048425-G	0.491188	1E-12		0.013133	[0.0095-0.0167] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
785	chr12	26339985	26339986	rs11048425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12p12.1		rs11048425-?	NR	5E-12				NR [~ 8900000] (imputed)	N
786	chr12	26345525	26345526	rs17380837	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	12p12.1	SSPN	rs17380837-C	0.711354	4E-7		0.230094	[0.14-0.32] unit increase	Affymetrix [8590397] (imputed)	N
786	chr12	26345525	26345526	rs17380837	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12p12.1	SSPN	rs17380837-C	0.693	5E-12		1.05	[1.04-1.07]	Illumina [34740186] (imputed)	N
786	chr12	26348428	26348429	rs113819537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12p12.1		rs113819537-G	NR	6E-10		0.0646	[0.044-0.085] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
786	chr12	26348428	26348429	rs113819537	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p12.1	SSPN	rs113819537-C	0.75	7E-9	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
786	chr12	26348428	26348429	rs113819537	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p12.1	SSPN	rs113819537-C	0.74	2E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
786	chr12	26350935	26350936	rs10842692	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	12p12.1		rs10842692-T	NR	6E-7				Affymetrix [7846216] (imputed)	N
786	chr12	26356031	26356032	rs1480029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs1480029-A	NR	4E-19		0.0253224	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26356031	26356032	rs1480029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs1480029-A	NR	4E-18		0.0246471	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26356031	26356032	rs1480029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs1480029-A	NR	5E-10		0.0183045	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
786	chr12	26356031	26356032	rs1480029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs1480029-A	NR	2E-11		0.0189787	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
786	chr12	26356031	26356032	rs1480029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN	rs1480029-A	NR	1E-9		0.0173781	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
786	chr12	26356031	26356032	rs1480029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p12.1	NR	rs1480029-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26358169	26358170	rs7134738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN	rs7134738-C	NR	5E-10		0.0183104	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26358169	26358170	rs7134738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN	rs7134738-C	NR	1E-9		0.0179524	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26358169	26358170	rs7134738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12p12.1	SSPN	rs7134738-C	0.351497	2E-10		0.014661105	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
786	chr12	26358169	26358170	rs7134738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p12.1	SSPN	rs7134738-C	0.351476	2E-13		0.016907856	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
786	chr12	26360997	26360998	rs12313513	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12p12.1	NR	rs12313513-?		7E-6		0.011	[0.0062-0.0158] unit increase	Illumina [7533529] (imputed)	N
786	chr12	26367358	26367359	rs755987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4	rs755987-G	NR	8E-11		0.0183914	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26367358	26367359	rs755987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4	rs755987-G	NR	2E-10		0.0180647	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26379531	26379532	rs12578121	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12p12.1	Intergenic	rs12578121-?		3E-6		2.794565	[NR] unit decrease	Illumina [575353]	N
786	chr12	26389037	26389038	rs4575373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs4575373-A	NR	1E-8		0.0161625	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26389037	26389038	rs4575373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs4575373-A	NR	4E-8		0.0156531	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26392079	26392080	rs16930371	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12p12.1	SSPN, ITPR2	rs16930371-A	0.82	2E-8		0.0062	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
786	chr12	26392079	26392080	rs16930371	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	12p12.1	SSPN, ITPR2	rs16930371-A	0.82	7E-6		0.005	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
786	chr12	26393614	26393615	rs7968316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7968316-T	NR	1E-12		0.0208276	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26393614	26393615	rs7968316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7968316-T	NR	5E-12		0.0201893	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26393657	26393658	rs77594504	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p12.1	NR	rs77594504-T	0.0978391	9E-11		0.0344095	[0.024-0.045] unit decrease	NR [19129689] (imputed)	N
786	chr12	26398706	26398707	rs2343872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs2343872-C	NR	9E-16		0.0227354	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26398706	26398707	rs2343872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs2343872-C	NR	3E-15		0.0223786	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26398706	26398707	rs2343872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs2343872-C	NR	4E-8		0.0155095	[0.01-0.0211] unit increase	Affymetrix [321016] (imputed)	N
786	chr12	26398706	26398707	rs2343872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs2343872-C	NR	9E-10		0.0175349	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26404140	26404141	rs148732284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs148732284-T	NR	2E-8		0.0446988	[0.029-0.06] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26404283	26404284	rs4451810	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs4451810-G	NR	2E-9		0.0173477	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26404297	26404298	rs2343873	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombin-antithrombin complex levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	12p12.1	NR	rs2343873-?	NR	3E-6				Illumina [7500450] (imputed)	N
786	chr12	26411475	26411476	rs11519084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs11519084-T	NR	2E-8		0.0434091	[0.028-0.058] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26413115	26413116	rs7963683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7963683-T	NR	1E-14		0.0221641	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26413115	26413116	rs7963683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7963683-T	NR	2E-14		0.0220157	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26413115	26413116	rs7963683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7963683-T	NR	3E-10		0.0183405	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26421433	26421434	rs9668178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs9668178-A	NR	8E-9		0.0189518	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26421433	26421434	rs9668178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs9668178-A	NR	1E-8		0.0188291	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26426337	26426338	rs9668337	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	12p12.1	SSPN	rs9668337-A	0.735122	3E-6		1.1	[1.06-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
786	chr12	26426337	26426338	rs9668337	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	12p12.1	SSPN	rs9668337-A	0.74	1E-9		1.11	[1.08-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
786	chr12	26426419	26426420	rs9668810	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p12.1	NR	rs9668810-C	NR	6E-18		0.06	NR unit decrease	NR [NR] (imputed)	N
786	chr12	26426670	26426671	rs9300169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p12.1		rs9300169-?	NR	2E-47				NR [~ 8900000] (imputed)	N
786	chr12	26426670	26426671	rs9300169	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	12p12.1		rs9300169-G	0.27	2E-13		0.17	[0.13-0.21] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
786	chr12	26426670	26426671	rs9300169	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p12.1	NR	rs9300169-G	NR	4E-18		0.06	NR unit decrease	NR [NR] (imputed)	N
786	chr12	26426670	26426671	rs9300169	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	12p12.1	SSPN, ITPR2	rs9300169-?	NR	4E-12		1.1918951	[1.13-1.25]	Illumina [13436641] (imputed)	N
786	chr12	26427465	26427466	rs7955904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7955904-T	NR	3E-10		0.0344341	[0.024-0.045] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26427465	26427466	rs7955904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs7955904-T	NR	6E-9		0.0318939	[0.021-0.043] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26428676	26428677	rs7974900	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p12.1	SSPN	rs7974900-T	0.26302	1E-14		0.0165691	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
786	chr12	26428676	26428677	rs7974900	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p12.1		rs7974900-?	NR	6E-20		0.0209777	[0.016-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
786	chr12	26428676	26428677	rs7974900	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	12p12.1	SSPN	rs7974900-T	NR	2E-16		0.130649	[0.1-0.162] unit decrease	Affymetrix [27512692] (imputed)	N
786	chr12	26428676	26428677	rs7974900	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p12.1	NR	rs7974900-C	NR	2E-18		0.0610378	NR unit decrease	NR [NR] (imputed)	N
786	chr12	26428792	26428793	rs7975017	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p12.1	NR	rs7975017-C	NR	4E-17		0.06	NR unit decrease	NR [NR] (imputed)	N
786	chr12	26430360	26430361	rs10842700	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p12.1	NR	rs10842700-C	0.262841	3E-80		0.0676086	[0.061-0.075] unit increase	NR [19129689] (imputed)	N
786	chr12	26430451	26430452	rs60906625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs60906625-A	NR	4E-13		0.025674	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26430451	26430452	rs60906625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs60906625-A	NR	2E-13		0.025979	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26430451	26430452	rs60906625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs60906625-A	NR	1E-11		0.0241377	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26430451	26430452	rs60906625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs60906625-A	NR	3E-11		0.0237208	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26430451	26430452	rs60906625	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p12.1	NR	rs60906625-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26435222	26435223	rs6487542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487542-T	NR	3E-13		0.0269553	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26435222	26435223	rs6487542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487542-T	NR	4E-13		0.0268717	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26435222	26435223	rs6487542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487542-T	NR	3E-9		0.0222201	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26437876	26437877	rs61914515	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p12.1	NR	rs61914515-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26438047	26438048	rs73072489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs73072489-T	NR	6E-14		0.0413971	[0.031-0.052] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26438047	26438048	rs73072489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs73072489-T	NR	5E-14		0.0415984	[0.031-0.052] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26438188	26438189	rs6487543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p12.1	NR	rs6487543-A	0.752153	9E-17				Affymetrix, Illumina [23472807] (imputed)	N
786	chr12	26438188	26438189	rs6487543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12p12.1	NR	rs6487543-A	0.770994	6E-18		0.019723	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
786	chr12	26438449	26438450	rs73072491	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p12.1	SSPN	rs73072491-G	NR	4E-13		0.0664757	NR unit decrease	NR [NR] (imputed)	N
786	chr12	26438731	26438732	rs6487544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p12.1	SSPN, RP11-283G6.5, RP11-283G6.4	rs6487544-G	0.661953	6E-9		0.013815028	[0.0092-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
786	chr12	26438963	26438964	rs34589387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs34589387-T	NR	5E-8		0.0265866	[0.017-0.036] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26439725	26439726	rs1513221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs1513221-T	NR	3E-8		0.0228595	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26439725	26439726	rs1513221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs1513221-T	NR	2E-8		0.0231737	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26439725	26439726	rs1513221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs1513221-T	NR	9E-10		0.0254798	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26439725	26439726	rs1513221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs1513221-T	NR	1E-8		0.0239064	[0.016-0.032] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	5E-22		0.0292545	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	2E-21		0.0288543	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	3E-9		0.0182243	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	8E-11		0.0205051	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	2E-12		0.0213224	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
786	chr12	26440058	26440059	rs10842702	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs10842702-C	NR	2E-11		0.0205102	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
786	chr12	26440697	26440698	rs12814794	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p12.1	SSPN	rs12814794-G	0.246311	2E-11		0.0149334	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
786	chr12	26441808	26441808	rs141761366	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	12p12.1		rs141761366-?	NR	6E-6				Illumina [7401356] (imputed)	N
786	chr12	26442629	26442630	rs6487546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487546-T	NR	2E-16		0.0232682	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26442629	26442630	rs6487546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487546-T	NR	5E-16		0.0229171	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26442629	26442630	rs6487546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs6487546-T	NR	3E-10		0.0180389	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26443029	26443030	rs4963975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs4963975-A	NR	1E-8		0.0213314	[0.014-0.029] unit decrease	Affymetrix [323858] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p12.1	ITPR2-SSPN	rs4963975-A	0.2541	3E-9	(EA)	0.0254	[0.017-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p12.1	ITPR2, SSPN	rs4963975-A	0.2535	4E-9		0.0241	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p12.1	ITPR2, SSPN	rs4963975-A	0.2541	3E-6	(EA)	0.0232	[0.014-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p12.1	ITPR2, SSPN	rs4963975-A	0.2538	1E-7	(EA,women)	0.0333	[0.021-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p12.1	ITPR2, SSPN	rs4963975-A	0.2535	2E-6		0.0225	[0.013-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443029	26443030	rs4963975	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p12.1	ITPR2, SSPN	rs4963975-?	0.2535	2E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26443652	26443652	rs56094350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs56094350-A	NR	2E-10		0.0180038	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
786	chr12	26444096	26444097	rs11048447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs11048447-T	NR	2E-18		0.027467	[0.021-0.034] unit decrease	Affymetrix [321788] (imputed)	N
786	chr12	26444096	26444097	rs11048447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs11048447-T	NR	3E-21		0.0285361	[0.023-0.034] unit decrease	Affymetrix [321016] (imputed)	N
786	chr12	26445563	26445564	rs1818476	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	12p12.1		rs1818476-?	NR	2E-8		0.055	[0.035-0.075] unit decrease	Affymetrix [9906178] (imputed)	N
786	chr12	26446480	26446481	rs2343876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p12.1	SSPN, RP11-283G6.4, RP11-283G6.5	rs2343876-G	NR	2E-9		0.0201659	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
786	chr12	26446624	26446625	rs11836164	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	12p12.1	intergenic	rs11836164-T	0.77	1E-7				Affymetrix, Illumina [~ 2500000] (imputed)	N
786	chr12	26449478	26449479	rs12829457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p12.1		rs12829457-?	NR	6E-9				NR [~ 8900000] (imputed)	N
786	chr12	26452655	26452656	rs17467918	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p12.1	NR	rs17467918-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26453282	26453283	rs718314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12p11.23		rs718314-G	NR	2E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
786	chr12	26453282	26453283	rs718314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs718314-G	NR	7E-59		0.053118	[0.047-0.06] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26453282	26453283	rs718314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs718314-G	NR	2E-58		0.0528782	[0.046-0.059] unit increase	Affymetrix [319769] (imputed)	N
786	chr12	26453282	26453283	rs718314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs718314-G	NR	9E-30		0.0375557	[0.031-0.044] unit increase	Affymetrix [321114] (imputed)	N
786	chr12	26453282	26453283	rs718314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs718314-G	NR	2E-35		0.0412479	[0.035-0.048] unit increase	Affymetrix [321169] (imputed)	N
786	chr12	26453282	26453283	rs718314	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	12p11.23	SSPN-ITPR2	rs718314-A	0.7565	3E-9				Affymetrix, Illumina [2331072] (imputed)	N
786	chr12	26453282	26453283	rs718314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12p11.23	RP11-283G6.5, RP11-283G6.4	rs718314-G	0.243981	4E-12		0.018056758	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
786	chr12	26453282	26453283	rs718314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12p11.23	RP11-283G6.5, RP11-283G6.4	rs718314-G	0.243967	3E-13		0.018920993	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
786	chr12	26453282	26453283	rs718314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12p11.23	RP11-283G6.5, RP11-283G6.4	rs718314-G	0.244018	3E-12		0.018008577	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
786	chr12	26453282	26453283	rs718314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p11.23	RP11-283G6.5, RP11-283G6.4	rs718314-G	0.244014	1E-12		0.01844223	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
786	chr12	26453282	26453283	rs718314	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	12p11.23	ITPR2	rs718314-?	NR	2E-9		1.25	[1.18-1.33]	Illumina [~ 6000000] (imputed)	N
786	chr12	26453282	26453283	rs718314	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12p11.23	NR	rs718314-G	0.23	7E-64		0.034	[0.03-0.038] unit increase	Affymetrix [2446094] (imputed)	N
786	chr12	26453282	26453283	rs718314	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12p11.23	NR	rs718314-G	0.23	5E-8				Affymetrix [2446094] (imputed)	N
786	chr12	26453282	26453283	rs718314	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p11.23	ITPR2	rs718314-G	0.2532	8E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
786	chr12	26453282	26453283	rs718314	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p11.23	intergenic	rs718314-A	0.7408	9E-15		0.0177	[0.013-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	12p11.23	NR	rs718314-?	0.26	2E-16		1.18	1.14-1.23	Illumina [7437091] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-G	0.25539999999999996	3E-18	(EA)	0.0398	[0.031-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-G	0.25539999999999996	3E-15	(EA)	0.0408	[0.031-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-G	0.25449999999999995	7E-15	(EA, women)	0.0515	[0.039-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-?	0.25539999999999996	4E-18	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-?	0.25539999999999996	2E-16	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-G	0.2551	1E-9	(EA, women)	0.0338	[0.023-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-?	0.2551	8E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs718314-?	0.2551	7E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26453282	26453283	rs718314	22010048	Wu X	2011-10-18	Hum Mol Genet	A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.	Renal cell carcinoma	894 European ancestry cases, 1,516 European ancestry controls	3,772 European ancestry cases, 8,505 European ancestry controls	12p11.23	ITPR2	rs718314-?	NR	9E-10		1.19	[1.13-1.26]	Illumina [533191]	N
786	chr12	26453282	26453283	rs718314	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	12p11.23	ITPR2, SSPN	rs718314-G	0.26	1E-17		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
786	chr12	26453763	26453764	rs931384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs931384-C	NR	4E-9		0.0194879	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26453763	26453764	rs931384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs931384-C	NR	4E-9		0.019566	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26456187	26456188	rs10842703	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p11.23	SSPN	rs10842703-A	0.756165	2E-10		0.0147247	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
786	chr12	26457189	26457190	rs1872992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs1872992-G	NR	4E-13		0.0259962	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
786	chr12	26457189	26457190	rs1872992	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12p11.23	intergenic	rs1872992-?	NR	3E-8		0.017	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
786	chr12	26457189	26457190	rs1872992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12p11.23	NR	rs1872992-A	0.756315	4E-11		0.00860131	[0.0058-0.0114] unit increase	Affymetrix [16585854] (imputed)	N
786	chr12	26457189	26457190	rs1872992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p11.23		rs1872992-?	NR	1E-39				NR [~ 8900000] (imputed)	N
786	chr12	26457189	26457190	rs1872992	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.23		rs1872992-?	NR	2E-34		0.0288177	[0.024-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
786	chr12	26457189	26457190	rs1872992	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs1872992-G	0.25429999999999997	3E-17	(EA, women)	0.0489	[0.038-0.06] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26457649	26457650	rs2129869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12p11.23	NR	rs2129869-A	0.779641	1E-12		0.00687995	[0.0049-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
786	chr12	26457649	26457650	rs2129869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12p11.23	NR	rs2129869-A	0.779641	2E-7		0.00565841	[0.0035-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
786	chr12	26457649	26457650	rs2129869	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12p11.23	intergenic	rs2129869-T	0.2217	2E-7	(EA)	0.077	[0.048-0.106] unit increase	Affymetrix, Illumina [NR] (imputed)	N
786	chr12	26458543	26458544	rs61914547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs61914547-T	NR	6E-16		0.0240312	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26458543	26458544	rs61914547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs61914547-T	NR	5E-16		0.0241339	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26458543	26458544	rs61914547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs61914547-T	NR	5E-11		0.0197055	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26458543	26458544	rs61914547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs61914547-T	NR	2E-9		0.0180173	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
786	chr12	26460044	26460045	rs11048454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p11.23		rs11048454-A	NR	3E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
786	chr12	26461144	26461145	rs10743579	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12p11.23	ITPR2, MIR4302, LOC100506451, RASSF8, BHLHE41, SSPN	rs10743579-A	0.246	3E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26461144	26461145	rs10743579	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	12p11.23	ITPR2, MIR4302, LOC100506451, RASSF8, BHLHE41, SSPN	rs10743579-A	0.245996418435906	4E-10	(women)	0.0461	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26461144	26461145	rs10743579	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12p11.23	MIR4302, ITPR2, LOC100506451, RASSF8, BHLHE41, SSPN	rs10743579-A	0.246	4E-14		0.0461	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26462981	26462982	rs10842704	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p11.23	ITPR2	rs10842704-T	0.766461	1E-28		0.0246967	[0.02-0.029] unit decrease	NR [13737936] (imputed)	N
786	chr12	26463081	26463082	rs11048456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048456-C	0.243803	1E-8		0.0246129	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463081	26463082	rs11048456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048456-C	0.243803	4E-9		0.0273576	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
786	chr12	26463081	26463082	rs11048456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p11.23		rs11048456-T	NR	6E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
786	chr12	26463081	26463082	rs11048456	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	12p11.23	ITPR2	rs11048456-?	NR	2E-8				NR [1800000]	N
786	chr12	26463081	26463082	rs11048456	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12p11.23	ITPR2	rs11048456-C	0.243820870789437	3E-9		0.0488	[0.033-0.065] unit increase	NR [5035015] (imputed)	N
786	chr12	26463081	26463082	rs11048456	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12p11.23	NR	rs11048456-C	NR	2E-8		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
786	chr12	26463081	26463082	rs11048456	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12p11.23	RP11-283G6.5, RP11-283G6.4	rs11048456-T	0.7534	7E-9		0.02413824	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	2E-8		0.0241432	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	2E-8		0.0236136	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	3E-8		0.0239706	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	2E-8		0.0238278	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	1E-9		0.0261979	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	2E-9		0.0255871	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	2E-9		0.0258944	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	3E-9		0.025218	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12p11.23		rs11048457-G	0.243786	4E-8		0.023352	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
786	chr12	26463173	26463174	rs11048457	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p11.23	NR	rs11048457-G	0.3857	2E-19		0.0385	[0.03-0.047] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
786	chr12	26463173	26463174	rs11048457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12p11.23		rs11048457-?	NR	3E-8				NR [~ 8900000] (imputed)	N
786	chr12	26465511	26465512	rs11534749	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12p11.23	ITPR2	rs11534749-T	0.244576	3E-10		0.00282833	[0.0019-0.0037] unit increase	Affymetrix [13995440] (imputed)	N
786	chr12	26465511	26465512	rs11534749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p11.23		rs11534749-?	NR	7E-50				NR [~ 8900000] (imputed)	N
786	chr12	26465584	26465585	rs11048458	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p11.23	NR	rs11048458-C	0.7503	5E-18		0.0458	[0.035-0.056] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
786	chr12	26465884	26465885	rs35291909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12p11.23		rs35291909-C	NR	1E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
786	chr12	26469015	26469016	rs10842705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p11.23		rs10842705-?	NR	2E-11				NR [~ 8900000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs10842707-T	NR	2E-21		0.0337573	[0.027-0.041] unit decrease	Affymetrix [321788] (imputed)	N
786	chr12	26471363	26471364	rs10842707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-283G6.5	rs10842707-T	NR	5E-24		0.0344719	[0.028-0.041] unit decrease	Affymetrix [321016] (imputed)	N
786	chr12	26471363	26471364	rs10842707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.23	NR	rs10842707-?	NR	1E-51				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.23	NR	rs10842707-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12p11.23	NR	rs10842707-T	0.204	2E-62		0.0343	[0.03-0.038] unit increase	NR [~ 27400000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p11.23	NA	rs10842707-T	0.2036	4E-39		0.0266	[0.023-0.031] unit increase	NR [~ 27400000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12p11.23	NR	rs10842707-T	0.2036	4E-39		0.0266	[0.023-0.031] unit increase	NR [~ 27400000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs10842707-T	0.231	4E-19	(women)	0.052	[0.041-0.063] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs10842707-?	0.231	4E-16	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12p11.23	ITPR2, SSPN	rs10842707-T	0.2246	2E-6	(women)	0.0172	[0.0099-0.0245] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.23	ITPR2, SSPN	rs10842707-T	0.2246	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.23	ITPR2, SSPN	rs10842707-T	0.2246	9E-16	(women)	0.0446	[0.034-0.055] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.23	ITPR2, SSPN	rs10842707-T	0.2246	1E-13		0.0309	[0.023-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12p11.23	NR	rs10842707-T	0.232379900368638	4E-18				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12p11.23	NR	rs10842707-T	0.232379900368638	1E-19		0.034759838	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
786	chr12	26471363	26471364	rs10842707	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs10842707-T	0.2318	4E-16	(EA)	0.0324	[0.025-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr12	26471363	26471364	rs10842707	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs10842707-T	0.2306	6E-15	(EA, women)	0.0413	[0.031-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr12	26471363	26471364	rs10842707	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs10842707-T	0.2296	2E-15		0.0313	[0.024-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr12	26471363	26471364	rs10842707	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs10842707-T	0.2286	5E-15	(women)	0.0411	[0.031-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
786	chr12	26472561	26472562	rs7132434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs7132434-A	0.243765	1E-9		0.027848	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
786	chr12	26472561	26472562	rs7132434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12p11.23		rs7132434-A	0.243765	2E-10		0.0287652	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
786	chr12	26474452	26474453	rs11048463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs11048463-G	NR	5E-8		0.0176808	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
786	chr12	26474452	26474453	rs11048463	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.23	NR	rs11048463-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
786	chr12	26474866	26474867	rs10842708	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12p11.23	SSPN, ITPR2	rs10842708-G	0.24	2E-8		5.63	z-score increase	Affymetrix [4312306] (imputed)	N
786	chr12	26474866	26474867	rs10842708	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p11.23	RP11-513G19.1	rs10842708-A	0.6564	1E-14		0.0183	[0.014-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
786	chr12	26474866	26474867	rs10842708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs10842708-G	0.25429999999999997	6E-18		0.0361	[0.028-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26474866	26474867	rs10842708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.23	ITPR2, SSPN	rs10842708-G	0.25429999999999997	2E-14		0.0394	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26474866	26474867	rs10842708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.23	ITPR2, SSPN	rs10842708-G	0.25329999999999997	1E-14	(women)	0.0512	[0.038-0.064] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26474866	26474867	rs10842708	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.23	ITPR2, SSPN	rs10842708-?	0.25429999999999997	6E-17				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
786	chr12	26475468	26475469	rs11048465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs11048465-T	NR	8E-10		0.0222105	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26475468	26475469	rs11048465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs11048465-T	NR	9E-10		0.022132	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
786	chr12	26475552	26475553	rs7300380	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Severe carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	61 European ancestry cases, at least 804 European ancestry controls	NA	12p11.23	NR	rs7300380-?		2E-6		3.07	[1.93-4.87]	Illumina [NR]	N
786	chr12	26475581	26475582	rs55846833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs55846833-A	NR	3E-8		0.0202442	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
786	chr12	26475850	26475851	rs11611742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs11611742-C	NR	2E-9		0.0177427	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
786	chr12	26475850	26475851	rs11611742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs11611742-C	NR	7E-13		0.0204128	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
787	chr12	26487282	26487283	rs11048470	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12p11.23	SSPN, ITPR2	rs11048470-G	0.73	4E-9		5.88	z-score increase	Affymetrix [4311822] (imputed)	N
787	chr12	26487282	26487283	rs11048470	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs11048470-T	0.2772	6E-12	(EA)	0.0253	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
787	chr12	26487282	26487283	rs11048470	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.23	ITPR2, SSPN	rs11048470-T	0.2772	2E-11	(EA, women)	0.0326	[0.023-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
787	chr12	26487657	26487658	rs4963983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs4963983-A	NR	8E-31		0.0336251	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26487657	26487658	rs4963983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs4963983-A	NR	3E-30		0.0332994	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26487657	26487658	rs4963983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs4963983-A	NR	3E-13		0.0214901	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
787	chr12	26487657	26487658	rs4963983	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p11.23	RP11-283G6.4, RP11-513G19.1	rs4963983-A	NR	2E-16		0.0242013	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
787	chr12	26489543	26489544	rs1049380	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	12p11.23	ITPR2	rs1049380-?	NR	7E-10		1.27	[1.17-1.37]	Illumina [~ 6000000] (imputed)	N
787	chr12	26489543	26489544	rs1049380	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	12p11.23	NR	rs1049380-?	0.44	2E-12		1.15	1.11-1.19	Illumina [7437091] (imputed)	N
787	chr12	26497127	26497128	rs111652906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs111652906-G	NR	2E-10		0.0673503	[0.047-0.088] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26497127	26497128	rs111652906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs111652906-G	NR	3E-10		0.0671053	[0.046-0.088] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	2E-26		0.0357849	[0.029-0.042] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	3E-26		0.0356216	[0.029-0.042] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	1E-12		0.0241243	[0.017-0.031] unit increase	Affymetrix [321114] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	2E-10		0.0223358	[0.015-0.029] unit decrease	Affymetrix [321788] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	2E-11		0.0224622	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
787	chr12	26499486	26499487	rs10842716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842716-C	NR	2E-15		0.0270892	[0.02-0.034] unit increase	Affymetrix [321169] (imputed)	N
787	chr12	26507015	26507016	rs10842717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842717-A	NR	2E-10		0.0186207	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
787	chr12	26507015	26507016	rs10842717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842717-A	NR	7E-11		0.0190071	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
787	chr12	26513099	26513100	rs10842720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842720-C	NR	2E-15		0.0238457	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26513099	26513100	rs10842720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs10842720-C	NR	3E-15		0.023798	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26523627	26523628	rs117398064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p11.23		rs117398064-C	0.0912	1E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
787	chr12	26529241	26529242	rs10505997	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	12p11.23	ITPR2	rs10505997-T	0.881516	2E-6		0.0448	[0.027-0.062] unit increase	Illumina [1220000] (imputed)	N
787	chr12	26534307	26534308	rs144621478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs144621478-C	NR	2E-9		0.0756229	[0.051-0.1] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26534307	26534308	rs144621478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	RP11-513G19.1, ITPR2	rs144621478-C	NR	2E-9		0.0751288	[0.05-0.1] unit increase	Affymetrix [319769] (imputed)	N
787	chr12	26555729	26555730	rs3825165	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	12p11.23	NR	rs3825165-T	NR	8E-6		1.1641443	[1.1-1.23]	Illumina [11600722] (imputed)	N
787	chr12	26566431	26566432	rs1021797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12p11.23		rs1021797-?	NR	7E-11				NR [~ 8900000] (imputed)	N
787	chr12	26583653	26583654	rs11048516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12p11.23	ITPR2	rs11048516-G	0.070321	4E-11		0.02896542	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
787	chr12	26600405	26600406	rs4963998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p11.23		rs4963998-?	NR	2E-10				NR [~ 8900000] (imputed)	N
788	chr12	26610094	26610095	rs61914406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12p11.23		rs61914406-?	NR	2E-10				NR [~ 8900000] (imputed)	N
788	chr12	26636385	26636386	rs2306677	17827064	van Es MA	2007-09-07	Lancet Neurol	ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study.	Amyotrophic lateral sclerosis	461 European ancestry cases, 450 European ancestry controls	876 European ancestry cases, 906 European ancestry controls	12p11.23	ITPR2	rs2306677-?	0.07	3E-6		1.58	[1.30-1.91]	Illumina [311946]	N
788	chr12	26645450	26645451	rs76684599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	ITPR2	rs76684599-C	NR	5E-8		0.0547585	[0.035-0.074] unit increase	Affymetrix [319769] (imputed)	N
788	chr12	26645450	26645451	rs76684599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	ITPR2	rs76684599-C	NR	5E-8		0.0546768	[0.035-0.074] unit increase	Affymetrix [319769] (imputed)	N
788	chr12	26681452	26681453	rs78440544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	ITPR2	rs78440544-T	NR	4E-10		0.0860379	[0.059-0.113] unit increase	Affymetrix [319769] (imputed)	N
788	chr12	26681452	26681453	rs78440544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	ITPR2	rs78440544-T	NR	8E-10		0.0849399	[0.058-0.112] unit increase	Affymetrix [319769] (imputed)	N
788	chr12	26681452	26681453	rs78440544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12p11.23	ITPR2	rs78440544-T	NR	2E-8		0.0782405	[0.051-0.106] unit increase	Affymetrix [321169] (imputed)	N
788	chr12	26684342	26684343	rs11613431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p11.23		rs11613431-A	0.262	7E-9		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
788	chr12	26690564	26690565	rs10842750	25303641	Zhang F	2014-09-25	Arthritis Rheumatol	Genome-wide association study identifies ITPR2 as a susceptibility gene for Kashin-Beck disease in Han Chinese.	Kashin-Beck disease	90 Han Chinese ancestry cases, 1,627 Han Chinese ancestry controls	559 Han Chinese ancestry cases, 467 Han Chinese ancestry controls	12p11.23	ITPR2	rs10842750-?	NR	1E-11				Affymetrix [532894]	N
789	chr12	26770888	26770889	rs4964006	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	12p11.23	ITPR2	rs4964006-T	0.98	2E-6		1.96	[1.49-2.58]	Affymetrix, Illumina [3378933] (imputed)	N
789	chr12	26776559	26776560	rs4964008	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p11.23	ITPR2, SMCO2, PPFIBP1, KLHL42	rs4964008-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
789	chr12	26778813	26778814	rs2046411	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p11.23	NR	rs2046411-C		9E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
789	chr12	26801235	26801236	rs2170640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	12p11.23		rs2170640-C	0.283034	5E-8		0.0189059	[0.012-0.026] unit increase	Illumina [13478961] (imputed)	N
789	chr12	26802548	26802549	rs1007938	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12p11.23	ITPR2	rs1007938-A	0.59489	1E-8		0.0121506	[0.008-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
789	chr12	26803948	26803949	rs7969023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12p11.23		rs7969023-C	NR	6E-9		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
789	chr12	26804298	26804300	rs74914310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12p11.23	ITPR2	rs74914310-T	0.162427	8E-10		0.018471522	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
789	chr12	26822648	26822649	rs189033718	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ITPR2	rs189033718-?	NR	3E-9		2.30624	[NR] unit increase	Affymetrix [NR] (imputed)	N
789	chr12	26831927	26831928	rs1900942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12p11.23		rs1900942-G	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
789	chr12	26834804	26834804	rs111626763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12p11.23		rs111626763-TACTC	NR	8E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
789	chr12	26834804	26834804	rs111626763	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p11.23	NR	rs111626763-T	0.412167	2E-8		0.010901	[0.0071-0.0147] unit increase	Affymetrix [15000001]	N
789	chr12	26858065	26858066	rs895964	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12p11.23	ITPR2	rs895964-G	0.526454	3E-8		0.017001	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
789	chr12	26858065	26858066	rs895964	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12p11.23	ITPR2	rs895964-G	0.532319	8E-11		0.016861	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
790	chr12	26872729	26872730	rs12823128	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	12p11.23	ITPR2	rs12823128-T	0.56	3E-8		0.0204	[0.013-0.028] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
790	chr12	26877884	26877885	rs2306547	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	12p11.23	NR	rs2306547-T	0.45	3E-9		0.019	[0.013-0.025] z score decrease	Affymetrix [up to 10400000] (imputed)	N
790	chr12	26877884	26877885	rs2306547	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12p11.23	ITPR2	rs2306547-C	0.530808	1E-7		0.015992	[0.01-0.022] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
790	chr12	26877884	26877885	rs2306547	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12p11.23	ITPR2	rs2306547-C	0.534149	4E-13		0.018719	[0.014-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
790	chr12	26905896	26905897	rs12581132	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.23	C12orf11	rs12581132-?	NR	3E-7	(PC 38:4)	0.18907599	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
790	chr12	26912718	26912719	rs11048674	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	12p11.23	NR	rs11048674-?		3E-6				Illumina [1211988] (imputed)	N
790	chr12	26958001	26958002	rs11614652	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (fetal genotype effect)	2,145 Central Asian ancestry cases, 2,027 Central Asian ancestry controls, 4,630 European ancestry cases, 373,345 European ancestry controls	452 Kazakh ancestry cases, 361 Kazakh ancestry controls, 580 European ancestry cases, 760 European ancestry controls	12p11.23		rs11614652-G	0.21	2E-7		1.18	[1.1-1.23]	Illumina [12130433] (imputed)	N
790	chr12	26958322	26958323	rs7295749	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	12p11.23	NR	rs7295749-?	NR	5E-6	(AA)	4.45	[3.47-5.43]	Illumina [905956]	N
791	chr12	27005959	27005960	rs7138744	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	12p11.23	ITPR2	rs7138744-A	0.3386	3E-6		1.4071	[NR] unit decrease	Illumina [1216189] (imputed)	N
791	chr12	27007892	27007893	rs7302178	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.23	C12orf11	rs7302178-?	NR	6E-6	(trimethylamine N oxide)	0.23707381	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
791	chr12	27019680	27019681	rs11048755	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	12p11.23	NR	rs11048755-?	NR	6E-6		0.088769734	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
791	chr12	27029095	27029096	rs2344965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.23	NR	rs2344965-T	0.11231	2E-24				Affymetrix, Illumina [24246363] (imputed)	N
791	chr12	27029095	27029096	rs2344965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12p11.23	NR	rs2344965-T	0.12421	4E-23		0.027485	[0.022-0.033] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
791	chr12	27029095	27029096	rs2344965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.23	NR	rs2344965-T	0.110558	3E-12				Affymetrix, Illumina [20825802] (imputed)	N
791	chr12	27033469	27033470	rs76439304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12p11.23	intergenic	rs76439304-T	0.1119	6E-10		0.0357552	[0.024-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
791	chr12	27034217	27034218	rs73288156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12p11.23		rs73288156-A	0.119989	8E-11		0.022142526	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
791	chr12	27035146	27035147	rs60871711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12p11.23	NR	rs60871711-A	0.121474	5E-12		0.020434	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
791	chr12	27039862	27039863	rs79584798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12p11.23		rs79584798-C	NR	5E-16		0.0265	[0.02-0.033] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
791	chr12	27039862	27039863	rs79584798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p11.23		rs79584798-C	0.120816	6E-23		0.03380601	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
791	chr12	27077734	27077735	rs149923457	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		INTS13	rs149923457-?	NR	4E-8	(female)	0.639174	[NR] unit increase	Affymetrix [NR] (imputed)	N
791	chr12	27090549	27090550	rs2279351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12p11.23	ASUN	rs2279351-C	0.125579	4E-19		0.0286015	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
791	chr12	27103448	27103449	rs146970669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12p11.23	FGFR1OP2	rs146970669-A	0.093118	1E-14		0.02965953	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
791	chr12	27103448	27103449	rs146970669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12p11.23	FGFR1OP2	rs146970669-A	0.093114	7E-12		0.026312465	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
791	chr12	27103448	27103449	rs146970669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12p11.23	NR	rs146970669-A	0.094107	2E-10		0.022392	[0.015-0.029] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
792	chr12	27149677	27149678	rs138864482	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	12p11.23	TM7SF3	rs138864482-A	0.362	2E-11		0.033		Illumina [243345]	N
792	chr12	27158487	27158488	rs12815671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.23	NR	rs12815671-C	0.888769	1E-13				Affymetrix, Illumina [17210439] (imputed)	N
792	chr12	27209327	27209328	rs7972246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p11.23		rs7972246-T	0.3451	1E-13		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
792	chr12	27209327	27209328	rs7972246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p11.23	Intergenic	rs7972246-T	0.3451	3E-13	(MTAG)	0.0101	[0.0074-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr12	27216560	27216561	rs11615755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p11.23		rs11615755-?	NR	9E-10				NR [~ 8900000] (imputed)	N
792	chr12	27234998	27234999	rs708167	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p11.23		rs708167-T	0.538	6E-10		0.13415933	[0.091-0.178] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
792	chr12	27234998	27234999	rs708167	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p11.23		rs708167-T	0.5383	2E-8		0.07885006	[0.052-0.106] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
793	chr12	27321111	27321112	rs1098708	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p11.23	STK38L	rs1098708-A	0.5411	9E-10		0.0931	[0.063-0.123] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
793	chr12	27347551	27347552	rs12811301	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p11.23		rs12811301-A	0.27	7E-11	(conditional-joint)	0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
793	chr12	27360178	27360188	rs36006021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12p11.23		rs36006021-C	NR	2E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
793	chr12	27360178	27360188	rs36006021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12p11.23		rs36006021-C	NR	4E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
793	chr12	27365387	27365388	rs76465000	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12p11.23	NR	rs76465000-?	NR	4E-6		10660.703	NR unit decrease	Illumina [2379855]	N
793	chr12	27386275	27386276	rs4246242	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12p11.23	NR	rs4246242-C	0.407555	1E-8		0.040957335	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
793	chr12	27393974	27393975	rs549435091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12p11.23	NR	rs549435091-G	0.066942	6E-11		0.028105	[0.02-0.037] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
794	chr12	27397791	27397792	rs12828220	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p11.23	Intergenic	rs12828220-T	0.6333	5E-9	(MTAG)	0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
794	chr12	27406746	27406747	rs16931769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p11.23	STK38L	rs16931769-A	0.111938	3E-17		0.029569205	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
794	chr12	27406746	27406747	rs16931769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p11.23	NR	rs16931769-G	0.887796	3E-15		0.023861	[0.018-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
794	chr12	27414083	27414084	rs7358633	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p11.23	NR	rs7358633-?	NR	4E-17				Affymetrix [NR]	N
794	chr12	27422246	27422247	rs367589977	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	12p11.23		rs367589977-C	0.0017	7E-7		3.338	[2.013-5.537]	Affymetrix [7842171] (imputed)	N
794	chr12	27422885	27422886	rs10842893	30714141	Chen H	2019-02-04	Int J Cancer	Two novel genetic variants in the STK38L and RAB27A genes are associated with glioma susceptibility.	Glioma	992 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,105 Han Chinese ancestry cases, 3,374 Han Chinese ancestry controls	12p11.23	STK38L	rs10842893-T	0.02	2E-12		2.07	[1.71-2.50]	Illumina [1889625] (imputed)	N
794	chr12	27436743	27436744	rs11048964	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.23	NR	rs11048964-A	0.01916	3E-8	(TOMM70)	0.0211	NR unit increase	Illumina [1671387] (imputed)	N
794	chr12	27480739	27480740	rs6487602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p11.23		rs6487602-T	NR	5E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
794	chr12	27498208	27498209	rs1037925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	ARNTL2	rs1037925-T	NR	3E-9		0.0210425	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
794	chr12	27498208	27498209	rs1037925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	ARNTL2	rs1037925-T	NR	3E-9		0.0211512	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
794	chr12	27518516	27518517	rs4246243	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12p11.23	NR	rs4246243-A	0.4854	4E-10		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
794	chr12	27522765	27522766	rs4964058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.23	NR	rs4964058-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
794	chr12	27522765	27522766	rs4964058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p11.23		rs4964058-?	NR	8E-10				NR [~ 8900000] (imputed)	N
795	chr12	27528071	27528072	rs7302352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12p11.23	ARNTL2	rs7302352-A	NR	3E-8		0.0157049	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
795	chr12	27528071	27528072	rs7302352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12p11.23	ARNTL2	rs7302352-A	NR	2E-8		0.0159506	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
795	chr12	27558727	27558728	rs111392859	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	12p11.23	ARNTL2	rs111392859-A	0.012	4E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
795	chr12	27623433	27623433	rs35052632	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	12p11.23	NR	rs35052632-?	NR	4E-7		0.109079	[0.067-0.151] unit increase	NR [13958389] (imputed)	N
795	chr12	27630736	27630737	rs116901460	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	12p11.23	SMCO2	rs116901460-T	0.986292546	5E-6		1.4525692	[1.24-1.7]	Illumina [10439017] (imputed)	N
795	chr12	27654363	27654363	rs199803244	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	12p11.23	SMCO2	rs199803244-A	0.945	5E-7	(Hispanic, females)	0.187	[0.11-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr12	27731869	27731870	rs6487614	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12p11.23	NR	rs6487614-?	NR	5E-6		0.124597	[0.071-0.178] unit decrease	NR [13958389] (imputed)	N
796	chr12	27749041	27749042	rs10842948	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	12p11.23		rs10842948-T	NR	5E-6		2.483855	[2.09-2.88]	Illumina [7225561] (imputed)	N
796	chr12	27782859	27782860	rs10842955	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p11.22		rs10842955-A	0.38	7E-13		7.18	z score increase	Affymetrix [9061022] (imputed)	N
796	chr12	27782859	27782860	rs10842955	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p11.22	NR	rs10842955-A	0.3545	3E-16				NR [9056863] (imputed)	N
796	chr12	27783440	27783441	rs2194815	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p11.22	NR	rs2194815-C	0.3557	3E-8				NR [9056863] (imputed)	N
797	chr12	27801914	27801915	rs60938043	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPFIBP1	rs60938043-?	NR	3E-9		1.16172	[NR] unit increase	Affymetrix [NR] (imputed)	N
797	chr12	27819561	27819562	rs4931235	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebral cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	12p11.22	PPFIBP1	rs4931235-?	NR	9E-6				Illumina [at least 653030]	N
797	chr12	27858544	27858545	rs11049101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs11049101-?	NR	5E-8				NR [~ 8900000] (imputed)	N
797	chr12	27867726	27867727	rs1127787	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12p11.22	NR	rs1127787-A	0.119409	1E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix [23037915] (imputed)	N
797	chr12	27867726	27867727	rs1127787	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12p11.22	KLHDC5	rs1127787-G	0.84	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
797	chr12	27867726	27867727	rs1127787	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12p11.22	MRPS35, KLHDC5	rs1127787-G	0.85	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
797	chr12	27867726	27867727	rs1127787	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12p11.22	KLHDC5	rs1127787-G	0.84	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [247470]	N
797	chr12	27867726	27867727	rs1127787	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12p11.22	MRPS35, KLHDC5	rs1127787-G	0.85	1E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [247470]	N
797	chr12	27891901	27891902	rs7963844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12p11.22		rs7963844-?	NR	4E-12				NR [~ 8900000] (imputed)	N
798	chr12	27923240	27923241	rs11049131	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p11.22	MANSC4	rs11049131-G	0.77109375	7E-200	(MANSC4, 9578_263_3)	0.82722884	[0.78-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
798	chr12	27926783	27926784	rs11049136	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.22	MANSC4, KLHL42	rs11049136-T	0.779397	3E-8	(-16 ms)	0.0359451	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
798	chr12	27927880	27927881	rs36138811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p11.22	MANSC4	rs36138811-C	0.232	7E-117	(MANSC domain-containing protein 4, MANSC4.9578.263.3)	0.64	[0.58-0.7] unit increase	Affymetrix [10572788] (imputed)	N
798	chr12	27955071	27955071	rs71274822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12p11.22		rs71274822-CT	NR	4E-15		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
798	chr12	27955295	27955296	rs1050288	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12p11.22	chr12mb27	rs1050288-T	0.337087066	2E-7		0.184	[0.11-0.25] unit increase	Affymetrix [~ 9800000] (imputed)	N
798	chr12	27955295	27955296	rs1050288	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12p11.22	KLHL42	rs1050288-T	0.34	3E-9		0.2125	[0.14-0.28] unit decrease	Affymetrix [19941912] (imputed)	N
798	chr12	27957532	27957533	rs7133214	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	12p11.22	KLHL42	rs7133214-G	NR	3E-8	(PWY-7528_L-methionine_salvage_cycle_I_(bacteria_and_plants))	5.5373735	NR Z-score decrease	Illumina [8100000] (imputed)	N
798	chr12	27957532	27957533	rs7133214	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	12p11.22	KLHL42	rs7133214-G	NR	3E-8	(PWY-7527_L-methionine_salvage_cycle_III)	5.562922	NR Z-score decrease	Illumina [8100000] (imputed)	N
798	chr12	27958112	27958113	rs10771367	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		12p11.22	KLHDC5	rs10771367-T	NR	3E-6		1.077992		Affymetrix, Illumina [1918233] (imputed)	N
798	chr12	27960151	27960152	rs10771369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12p11.22		rs10771369-C	NR	1E-13		0.0639	[0.047-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
798	chr12	27960151	27960152	rs10771369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p11.22		rs10771369-C	NR	1E-21		0.0234	[0.019-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
798	chr12	27960443	27960443	rs571463591	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12p11.22	intergenic	rs571463591-A	0.8367	3E-15		0.2722	[0.2-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
798	chr12	27962102	27962103	rs10842991	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12p11.22	RN7SKP15	rs10842991-T	0.1993	6E-19		0.1937	[0.15-0.24] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
798	chr12	27962259	27962260	rs10771372	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p11.22	NR	rs10771372-C	0.8049	2E-35		0.0721	[0.061-0.083] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
798	chr12	27963401	27963402	rs3751236	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	12p11.22	NR	rs3751236-G	0.6903	4E-13		0.0684	[0.05-0.087] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
798	chr12	27963401	27963402	rs3751236	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12p11.22	KLHDC5	rs3751236-G	0.672	7E-21		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
798	chr12	27963506	27963507	rs3751237	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	12p11.22	KLHDC5	rs3751237-T	0.69	7E-14		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
798	chr12	27963506	27963507	rs3751237	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	12p11.22	KLHDC5	rs3751237-T	NR	2E-6	(Japanese)	1.08528	[1.04907-1.12274]	Illumina [7521072] (imputed)	N
798	chr12	27963675	27963676	rs3751239	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p11.22	NR	rs3751239-G	0.2193	2E-47		0.0687	[0.059-0.078] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
798	chr12	27964863	27964864	rs57469061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12p11.22		rs57469061-C	NR	2E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
798	chr12	27964995	27964996	rs12578595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p11.22		rs12578595-T	0.316953837	2E-14		0.07542573	[0.056-0.095] unit decrease	Illumina [13429769] (imputed)	N
798	chr12	27964995	27964996	rs12578595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p11.22		rs12578595-T	NR	2E-22		0.0715	[0.057-0.086] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
798	chr12	27964995	27964996	rs12578595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12p11.22		rs12578595-T	0.31299134	4E-8		0.058006685	[0.037-0.079] unit decrease	Illumina [13134967] (imputed)	N
798	chr12	27964995	27964996	rs12578595	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12p11.22		rs12578595-T	0.315771011	8E-15		0.9333884	[0.917287373-0.949772025]	Illumina [8919992] (imputed)	N
798	chr12	27965149	27965150	rs10842994	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p11.22		rs10842994-T	0.1947	5E-18		0.1661807	[0.13-0.2] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
798	chr12	27965149	27965150	rs10842994	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12p11.22	KLHDC5	rs10842994-C	0.8054	4E-20		1.08	[1.06-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
798	chr12	27965149	27965150	rs10842994	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12p11.22	LOC105369709, KLHL42	rs10842994-T	0.197025394898452	1E-16		0.0755	[0.058-0.093] unit decrease	NR [5035015] (imputed)	N
798	chr12	27965149	27965150	rs10842994	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12p11.22	KLHDC5	rs10842994-T	0.2078	9E-12		0.069	[0.049-0.089] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
798	chr12	27965149	27965150	rs10842994	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12p11.22	KLHDC5	rs10842994-T	0.2078	2E-10	(EA)	0.0809	[0.056-0.106] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
798	chr12	27965149	27965150	rs10842994	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	12p11.22	KLHDC5	rs10842994-C	0.8	8E-6		1.09	[1.04-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
798	chr12	27965149	27965150	rs10842994	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12p11.22	KLHDC5	rs10842994-C	NR	3E-8	(men)	1.11	[1.07-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
798	chr12	27965149	27965150	rs10842994	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12p11.22	KLHDC5	rs10842994-C	0.80113799137792	6E-10		1.1	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
798	chr12	27984189	27984190	rs4420311	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	12p11.22	KLHDC5, PTHLH	rs4420311-G	NR	4E-7	(EA)	0.0872	[0.053-0.121] unit increase	Illumina [~ 2500000] (imputed)	N
798	chr12	27984189	27984190	rs4420311	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	12p11.22	KLHDC5, PTHLH	rs4420311-G	0.46	4E-8		0.085	[0.054-0.116] unit increase	Illumina [~ 2500000] (imputed)	N
798	chr12	27984189	27984190	rs4420311	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	12p11.22	KLHDC5, PTHLH	rs4420311-G	NR	1E-7	(EA)	0.0921	[0.058-0.126] unit increase	Illumina [~ 2500000] (imputed)	N
798	chr12	27984189	27984190	rs4420311	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	12p11.22	KLHDC5, PTHLH	rs4420311-G	0.46	3E-8		0.086	[0.055-0.117] unit increase	Illumina [~ 2500000] (imputed)	N
798	chr12	27986939	27986940	rs10843003	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p11.22	NR	rs10843003-G	NR	5E-10		0.0484506	NR unit decrease	NR [NR] (imputed)	N
798	chr12	27990849	27990850	rs2162034	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs2162034-A	0.294507	8E-12		0.0238841	[0.017-0.031] unit decrease	NR [19129689] (imputed)	N
798	chr12	27994949	27994950	rs77383637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs77383637-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
798	chr12	27995046	27995047	rs11049193	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	12p11.22	NR	rs11049193-T	0.255988	9E-7		1.03	[1.02-1.04]	Illumina [270934]	N
798	chr12	28004885	28004886	rs258394	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	12p11.22	NR	rs258394-C	0.208384	2E-6		1.03	[1.02-1.04]	Illumina [270934]	N
798	chr12	28008768	28008769	rs258401	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	12p11.22	KLHDC5	rs258401-T	0.26	6E-6		0.24	[0.14-0.34] unit increase	Illumina [2675979] (imputed)	N
798	chr12	28010406	28010407	rs57380671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p11.22		rs57380671-?	NR	2E-19				NR [~ 8900000] (imputed)	N
798	chr12	28013562	28013563	rs11049204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs11049204-?	NR	6E-23				NR [~ 8900000] (imputed)	N
798	chr12	28014969	28014970	rs10492367	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	12p11.22	NR	rs10492367-T	0.19	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
798	chr12	28014969	28014970	rs10492367	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	12p11.22	KLHL42, PTHLH	rs10492367-T	0.19	1E-24		1.1639274	[1.130649221-1.198185106]	Affymetrix, Illumina [up to 17000000] (imputed)	N
798	chr12	28014969	28014970	rs10492367	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	12p11.22	NR	rs10492367-T	0.19	7E-19		1.14137	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
798	chr12	28015390	28015391	rs10743612	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	12p11.22	Intergenic	rs10743612-A	0.24	3E-12	(hip shape mode 1)	0.093	[0.068-0.118] unit increase	Illumina [7191926] (imputed)	N
798	chr12	28017158	28017159	rs7953528	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12p11.22	KLHDC5	rs7953528-A	0.18	2E-12		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
798	chr12	28017521	28017522	rs258415	24736177	Sprooten E	2014-04-13	Neuroimage	Common genetic variants and gene expression associated with white matter microstructure in the human brain.	White matter microstructure (global fractional anisotropy)	727 Mexican American individuals from 65 families, 49 Mexican American individuals	NA	12p11.22	intergenic	rs258415-?		8E-10				Illumina [929187]	N
798	chr12	28025195	28025196	rs10843013	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	12p11.22		rs10843013-A	0.7837	3E-30		0.8597617	[0.837803641-0.882295297]	Affymetrix, Illumina [NR] (imputed)	N
798	chr12	28025195	28025196	rs10843013	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	12p11.22	Intergenic	rs10843013-C	NR	5E-19	(additive)	1.14	[1.11-1.17]	Affymetrix, Illumina [11554240] (imputed)	N
798	chr12	28025195	28025196	rs10843013	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	12p11.22	NR	rs10843013-C	0.210167	4E-8		1.04	[1.02-1.05]	Illumina [270934]	N
798	chr12	28033501	28033502	rs258430	28040410	Meyers JL	2016-12-28	Int J Psychophysiol	A genome wide association study of fast beta EEG in families of European ancestry.	Fast beta electroencephalogram	1,564 European ancestry individuals from 117 alcohol dependence affected families	NA	12p11.22	intergenic	rs258430-G	0.573	6E-7		0.111	[0.068-0.154] unit decrease	Illumina [12973748] (imputed)	N
798	chr12	28041611	28041612	rs11049211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p11.22		rs11049211-?	NR	8E-12				NR [~ 8900000] (imputed)	N
799	chr12	28073171	28073172	rs7309492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs7309492-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
799	chr12	28082166	28082167	rs3963361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p11.22		rs3963361-?	NR	2E-9				NR [~ 8900000] (imputed)	N
799	chr12	28082166	28082167	rs3963361	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.22		rs3963361-?	NR	1E-9		0.0136359	[0.0095-0.0178] unit increase	Affymetrix [20259828] (imputed)	N
799	chr12	28090064	28090065	rs11832818	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.22	NR	rs11832818-C	0.0122	9E-9	(NIPSNAP1)	0.3739	NR unit increase	Illumina [1671387] (imputed)	N
799	chr12	28091699	28091700	rs11049231	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p11.22	PTHLH	rs11049231-A	NR	1E-8		0.089608	NR unit decrease	NR [NR] (imputed)	N
799	chr12	28093611	28093612	rs10843026	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	12p11.22		rs10843026-G	0.05	3E-9		0.3	[0.2-0.4] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
799	chr12	28095012	28095013	rs10843030	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs10843030-G	0.0409438	9E-9		0.0463114	[0.031-0.062] unit decrease	NR [19129689] (imputed)	N
799	chr12	28099721	28099722	rs74416281	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs74416281-A	0.0891653	1E-8		0.0318897	[0.021-0.043] unit increase	NR [19129689] (imputed)	N
799	chr12	28101995	28101996	rs11049237	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.22	NR	rs11049237-C	0.01568	9E-9	(ANXA6)	0.4593	NR unit increase	Illumina [1671387] (imputed)	N
799	chr12	28108687	28108688	rs12230367	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p11.22	KLHL42, PTHLH	rs12230367-?	NR	7E-22		0.046592604	[0.037-0.056] unit increase	Illumina [27896057] (imputed)	N
799	chr12	28113581	28113582	rs1272192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs1272192-?	NR	5E-14				NR [~ 8900000] (imputed)	N
799	chr12	28114642	28114643	rs967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p11.22		rs967-A	0.09515	2E-15		0.0271453	[0.02-0.034] unit increase	Illumina [13479295] (imputed)	N
799	chr12	28126244	28126245	rs39635	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs39635-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
799	chr12	28132511	28132512	rs10843047	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	12p11.22		rs10843047-A	NR	4E-7		1.078	[1.047-1.11]	Affymetrix [7846216] (imputed)	N
799	chr12	28140276	28140277	rs1314084	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	12p11.22		rs1314084-T	0.837677862	4E-8		1.1657724	[1.10391199-1.231099387]	Illumina [8919992] (imputed)	N
799	chr12	28152992	28152993	rs805583	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	12p11.22	PTHLH	rs805583-G	0.76	3E-10		1.17	[1.114-1.228]	Illumina [4946503] (imputed)	N
799	chr12	28154894	28154895	rs1838564	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	12p11.22	PTHLH, CCDC91	rs1838564-?	NR	1E-12		0.136	[0.099-0.174] unit increase	Illumina [12039487] (imputed)	N
799	chr12	28155079	28155080	rs10771399	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	12p11.22	PTHLH	rs10771399-?	0.88	4E-13		1.2658228	[1.15-1.28]	Illumina [10909381] (imputed)	N
799	chr12	28155079	28155080	rs10771399	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	12p11.22	PTHLH	rs10771399-?	0.9	7E-18		1.1627907	[1.1-1.25] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
799	chr12	28155079	28155080	rs10771399	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	12p11.22	NR	rs10771399-A	0.88	2E-22		1.1627907	[1.12-1.2]	Affymetrix, Illumina [~ 14000000] (imputed)	N
799	chr12	28155079	28155080	rs10771399	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	12p11.22	NR	rs10771399-A	0.88	5E-34		1.1627907	[1.12-1.2]	Affymetrix, Illumina [~ 11600000] (imputed)	N
799	chr12	28155079	28155080	rs10771399	24325915	Purrington KS	2013-12-09	Carcinogenesis	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	12p11.22	PTHLH	rs10771399-G		2E-8		1.3889	[1.25-1.56]	Illumina [NR] (imputed)	N
799	chr12	28155079	28155080	rs10771399	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	12p11.22	intergenic	rs10771399-A	0.86	8E-6		1.18	[1.1-1.27]	Illumina [2568349] (imputed)	N
799	chr12	28155079	28155080	rs10771399	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	12p11.22	PTHLH	rs10771399-T	0.895	2E-12		1.2	[1.15-1.27]	Illumina [NR]	N
799	chr12	28155079	28155080	rs10771399	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12p11.22	PTHLH	rs10771399-A	0.88	8E-31		1.16	[1.14-1.2]	Affymetrix, Illumina [~ 2600000] (imputed)	N
799	chr12	28156080	28156081	rs12371778	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	12p11.22	LOC100129646, PTHLH	rs12371778-G	0.091	1E-8		0.162	[0.11-0.22] cup size decrease	Illumina [7422970] (imputed)	N
799	chr12	28166066	28166067	rs2590275	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	12p11.22		rs2590275-?	NR	5E-8		0.907977	[0.87-0.94]	NR [682398]	N
799	chr12	28168809	28168810	rs180958337	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.22	NR	rs180958337-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
799	chr12	28168809	28168810	rs180958337	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs180958337-?	NR	4E-26				Affymetrix [~ 8270000] (imputed)	N
799	chr12	28174816	28174817	rs7297051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	12p11.22		rs7297051-T	NR	7E-15		0.0922	[0.069-0.115] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
799	chr12	28174816	28174817	rs7297051	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	12p11.22		rs7297051-C	NR	8E-12		1.107	[1.075-1.14]	Affymetrix [7846216] (imputed)	N
799	chr12	28174816	28174817	rs7297051	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	12p11.22		rs7297051-C	NR	5E-15		1.1124	NR	Affymetrix [7846216] (imputed)	N
799	chr12	28174816	28174817	rs7297051	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12p11.22		rs7297051-T	NR	6E-72		0.89	[0.87-0.9]	Affymetrix, Illumina [NR] (imputed)	N
799	chr12	28174816	28174817	rs7297051	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12p11.22	intergenic	rs7297051-C	0.76	3E-60		1.1235955	[1.1-1.15] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
799	chr12	28174816	28174817	rs7297051	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	12p11.22	NR	rs7297051-C	0.76	9E-25		1.1494253	[1.1-1.19] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
799	chr12	28174816	28174817	rs7297051	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	12p11.22	NR	rs7297051-C	0.76	8E-9		1.1363636	[1.09-1.18]	Illumina [~ 11500000] (imputed)	N
799	chr12	28174816	28174817	rs7297051	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	12p11.22	PTHLH	rs7297051-?	0.76	1E-14		1.1627907	[1.12-1.2]	Illumina [10909381] (imputed)	N
799	chr12	28174816	28174817	rs7297051	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	12p11.22	PTHLH	rs7297051-?	0.77	3E-20		1.1235955	[1.08-1.18] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
800	chr12	28192988	28192989	rs7964407	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12p11.22	NR	rs7964407-G	0.620613410769915	6E-6	(IGP8)	0.2061	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
800	chr12	28195124	28195125	rs11049300	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	12p11.22	PTHLH	rs11049300-G		3E-7		1.4144	[1.28-1.55]	Illumina [up to 4972397] (imputed)	N
800	chr12	28203244	28203245	rs7972874	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	12p11.22	PTHLH, CCDC91	rs7972874-A	NR	1E-8		0.0471	unit decrease	Illumina [15409056] (imputed)	N
800	chr12	28207016	28207017	rs7970617	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs7970617-C	0.442169	5E-9		0.0190233	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
800	chr12	28209695	28209696	rs10843078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs10843078-G	NR	5E-8		0.0191271	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
800	chr12	28214683	28214684	rs3852540	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p11.22	CCDC91	rs3852540-A	0.762832671957672	1E-7	(G_Aestuariispira_RNT)	0.303478	[0.19-0.42] unit decrease	Illumina [7711310] (imputed)	N
800	chr12	28216502	28216503	rs7311105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs7311105-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
800	chr12	28228566	28228567	rs522958	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	12p11.22	intergenic	rs522958-?	NR	8E-7	(binary)			Perlegen [429981]	N
800	chr12	28228566	28228567	rs522958	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	12p11.22	intergenic	rs522958-?	NR	1E-6	(binary)			Perlegen [429981]	N
800	chr12	28235065	28235066	rs11049328	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs11049328-A	0.0820033	8E-11		0.036632	[0.026-0.048] unit increase	NR [19129689] (imputed)	N
800	chr12	28239573	28239574	rs10843092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs10843092-G	NR	4E-12		0.023201	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
800	chr12	28239573	28239574	rs10843092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs10843092-G	NR	2E-10		0.0212355	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
800	chr12	28254083	28254084	rs41525752	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p11.22	PTHLH	rs41525752-C	0.85671875	7E-7	(PTHLH, 2962_50_2)	0.17328306	[0.1-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
800	chr12	28259195	28259196	rs12810398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs12810398-T	NR	4E-8		0.0166726	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
800	chr12	28270445	28270446	rs10771406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs10771406-T	NR	1E-10		0.0203493	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
800	chr12	28271455	28271456	rs11049356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs11049356-T	NR	2E-12		0.0229825	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
800	chr12	28271527	28271528	rs899505	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12p11.22		rs899505-?	NR	1E-24				NR [9705931] (imputed)	N
800	chr12	28271527	28271528	rs899505	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12p11.22	NR	rs899505-?	NR	2E-8	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
800	chr12	28272129	28272129	rs756099553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.22	CCDC91	rs756099553-C	NR	5E-9		0.0176592	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
800	chr12	28273016	28273017	rs7316732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs7316732-T	NR	2E-9		0.0213376	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
800	chr12	28273655	28273656	rs1904387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs1904387-T	NR	3E-8		0.0180288	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
800	chr12	28276156	28276157	rs10843103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs10843103-T	NR	1E-14		0.0255851	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
800	chr12	28276625	28276626	rs10843104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	12p11.22		rs10843104-C	0.3	9E-6				NR [13131314] (imputed)	N
800	chr12	28276625	28276626	rs10843104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12p11.22		rs10843104-C	0.3	1E-30		11.51	z score increase	Affymetrix [9061022] (imputed)	N
800	chr12	28277337	28277338	rs1351266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12p11.22		rs1351266-T	0.26225	3E-12		0.017697698	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
800	chr12	28279772	28279773	rs11049359	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12p11.22	NR	rs11049359-C	0.3061	1E-17				NR [9056863] (imputed)	N
800	chr12	28279772	28279773	rs11049359	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	12p11.22		rs11049359-C	0.289586919	4E-19				Illumina [7417619] (imputed)	N
800	chr12	28283187	28283187	rs11383346	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	12p11.22	PTHLH, CCDC91	rs11383346-A	NR	1E-17	(adults)	0.042	[0.032-0.052] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
800	chr12	28283187	28283187	rs11383346	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	12p11.22	PTHLH, CCDC91	rs11383346-A	NR	1E-13	(adults)	0.036	[0.026-0.046] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
800	chr12	28286989	28286990	rs191000678	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p11.22	Intergenic	rs191000678-T	0.998	1E-6	(AA)	0.884	NR unit increase	Illumina [NR] (imputed)	N
800	chr12	28289723	28289724	rs7305790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.22	CCDC91	rs7305790-C	NR	3E-8		0.0173242	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
800	chr12	28291333	28291334	rs11049365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12p11.22	CCDC91	rs11049365-A	0.253045	3E-10		0.016279845	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
800	chr12	28291900	28291901	rs12813778	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	12p11.22	CCDC91, PTHLH	rs12813778-A	0.23	2E-6		0.068	[0.041-0.095] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
800	chr12	28297883	28297884	rs61920210	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	12p11.22	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs61920210-?		9E-14				NR [7428630] (imputed)	N
800	chr12	28298421	28298422	rs2881787	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTHLH	5,359 Icelandic ancestry individuals	NA	12p11.22		rs2881787-T	0.2621	3E-14		0.154933	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
800	chr12	28307330	28307331	rs35230625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs35230625-C	NR	1E-9		0.0237042	[0.016-0.031] unit increase	Affymetrix [321114] (imputed)	N
800	chr12	28307716	28307717	rs10843115	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p11.22	PTHLH	rs10843115-T	0.271	1E-11	(Parathyroid hormone-related protein, PTHLH.2962.50.2)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
800	chr12	28308423	28308424	rs1479492	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12p11.22	NR	rs1479492-?		1E-15				NR [7428630] (imputed)	N
800	chr12	28308423	28308424	rs1479492	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12p11.22	MAST4	rs1479492-?		4E-22				NR [7428630] (imputed)	N
800	chr12	28308423	28308424	rs1479492	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12p11.22	LARS2, LIMD1, SACM1L, SLC6A20	rs1479492-?		3E-15				NR [7428630] (imputed)	N
801	chr12	28320535	28320536	rs11049386	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	12p11.22	CCDC91	rs11049386-T	0.71	3E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
801	chr12	28333107	28333108	rs2078017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	12p11.22		rs2078017-T	0.31	5E-7				Affymetrix [9061022] (imputed)	N
801	chr12	28333107	28333108	rs2078017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p11.22		rs2078017-T	0.31	2E-93		20.5	z score increase	Affymetrix [9061022] (imputed)	N
801	chr12	28337066	28337067	rs146046988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs146046988-?	NR	1E-9				NR [~ 8900000] (imputed)	N
801	chr12	28347381	28347382	rs11049431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs11049431-T	NR	2E-14		0.0283395	[0.021-0.036] unit decrease	Affymetrix [323123] (imputed)	N
801	chr12	28354364	28354365	rs529602522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12p11.22	NR	rs529602522-T	0.332864	4E-10		0.014249	[0.0098-0.0187] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
801	chr12	28359984	28359985	rs12049916	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Hand osteoarthritis severity (hand Klsum)	4,829 Dutch ancestry individuals	1,203 individuals	12p11.22	CCDC91	rs12049916-A	0.77	2E-8		0.78	[0.51-1.05] unit increase	Illumina [10500000] (imputed)	N
801	chr12	28359984	28359985	rs12049916	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Finger osteoarthritis severity (hand Klsum)	1,791 Dutch ancestry individuals	1,203 individuals	12p11.22	CCDC91	rs12049916-G	0.22	2E-8		0.58	[0.38-0.78] unit increase	Illumina [10500000] (imputed)	N
801	chr12	28382728	28382729	rs398076532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p11.22		rs398076532-G	NR	3E-11		0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
801	chr12	28394901	28394902	rs7303747	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12p11.22	CCDC91	rs7303747-?		5E-31				NR [7428630] (imputed)	N
801	chr12	28404741	28404742	rs75757272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs75757272-G	NR	1E-12		0.02707	[0.02-0.035] unit increase	Affymetrix [321114] (imputed)	N
801	chr12	28406514	28406515	rs1979679	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	12p11.22	CCDC91, PTHLH	rs1979679-T	0.362	4E-12		1.3	[1.21-1.40]	Illumina [5163786] (imputed)	N
801	chr12	28412371	28412372	rs11049488	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	12p11.22	CCDC91	rs11049488-G	0.7	5E-8		1.06	[1.04 -1.08]	Illumina [at least 109036]	N
801	chr12	28420712	28420713	rs189064624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs189064624-C	NR	4E-8		0.0222095	[0.014-0.03] unit increase	Affymetrix [321114] (imputed)	N
801	chr12	28441063	28441064	rs10843148	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p11.22	CCDC91	rs10843148-?	NR	1E-15		0.023916448	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
801	chr12	28441063	28441064	rs10843148	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p11.22	CCDC91	rs10843148-A	0.8309	2E-6		0.0405	[0.024-0.057] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
801	chr12	28442073	28442074	rs11049506	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs11049506-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
802	chr12	28451310	28451311	rs79395932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12p11.22	CCDC91	rs79395932-T	0.216461	2E-9		0.017375559	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
802	chr12	28451310	28451311	rs79395932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12p11.22	CCDC91	rs79395932-T	0.216422	2E-11		0.019239267	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6900999999999999	2E-10		0.0311	[0.021-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6889000000000001	2E-7	(EA, women)	0.032	[0.02-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6889000000000001	1E-10	(EA)	0.0312	[0.022-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6900999999999999	1E-8		0.0311	[0.02-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6889000000000001	1E-8	(EA)	0.0313	[0.021-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12p11.22	CCDC91	rs10843151-G	0.6877	9E-7	(EA,women)	0.0334	[0.02-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-?	0.6900999999999999	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-?	0.6889000000000001	5E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28471318	28471319	rs10843151	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12p11.22	CCDC91	rs10843151-?	0.6889000000000001	1E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr12	28485692	28485693	rs61920563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs61920563-G	NR	3E-10		0.0214775	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	7E-20	(females)	0.02831	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	2E-16		0.01837	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	4E-11		0.01328	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	2E-14	(females)	0.02173	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	4E-6	(females)	0.01917	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	2E-7		0.01463	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28532960	28532961	rs11049566	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12p11.22	CCDC91	rs11049566-T	0.277034	1E-6	(males)	0.009384	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	2E-10		0.0258	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	1E-7	(men)	0.0329	[0.021-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	1E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	1E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	5E-6	(women)	0.0212	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	2E-9	(men)	0.0317	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12p11.22	CCDC91	rs2638953-C	0.6764	2E-12		0.0258	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
802	chr12	28534414	28534415	rs2638953	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.22	CCDC91	rs2638953-C	0.6829	7E-11	(EA)	0.0237	[0.017-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
802	chr12	28534414	28534415	rs2638953	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.22	CCDC91	rs2638953-C	0.6829	1E-7	(EA, men)	0.0268	[0.017-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
802	chr12	28534414	28534415	rs2638953	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.22	CCDC91	rs2638953-C	0.6837	6E-7	(EA,men)	0.0274	[0.017-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
802	chr12	28534414	28534415	rs2638953	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.22	CCDC91	rs2638953-C	0.6837	4E-6	(EA, women)	0.0223	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
802	chr12	28534414	28534415	rs2638953	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12p11.22	CCDC91	rs2638953-C	0.6837	2E-10	(EA)	0.0242	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
802	chr12	28534414	28534415	rs2638953	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12p11.22	CCDC91	rs2638953-C	0.68	7E-17		0.032	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
802	chr12	28565279	28565280	rs11049576	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p11.22	CCDC91	rs11049576-T	0.7072	9E-20		0.0188	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
802	chr12	28569713	28569714	rs10843164	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12p11.22	CCDC91	rs10843164-T	0.68	6E-12		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
803	chr12	28588241	28588242	rs7977418	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12p11.22	CCDC91	rs7977418-T	0.5415	8E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
803	chr12	28588241	28588242	rs7977418	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12p11.22	CCDC91	rs7977418-T	0.5415	1E-58		0.0379	[0.033-0.042] unit increase	Affymetrix [19819130] (imputed)	N
803	chr12	28588241	28588242	rs7977418	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12p11.22	CCDC91	rs7977418-T	0.5415	1E-43		0.0322	[0.028-0.037] unit increase	Affymetrix [19819130] (imputed)	N
803	chr12	28588241	28588242	rs7977418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p11.22		rs7977418-?	NR	5E-66				NR [~ 8900000] (imputed)	N
803	chr12	28589092	28589093	rs11049598	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12p11.22		rs11049598-C	0.3	3E-22		9.72	z score increase	Affymetrix [9061022] (imputed)	N
803	chr12	28589092	28589093	rs11049598	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12p11.22	NR	rs11049598-C	0.3095	1E-17				NR [9056863] (imputed)	N
803	chr12	28594572	28594573	rs2348236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs2348236-C	NR	5E-10		0.021066	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
803	chr12	28596064	28596065	rs11049605	30888730	Hsu YH	2019-03-19	J Bone Miner Res	Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.	Narrowest width of the femoral neck	18,719 individuals	8,334 individuals	12p11.22	CCDC91	rs11049605-?		5E-12		6.908	NR z score increase	Affymetrix, Illumina [up to 2622085] (imputed)	N
803	chr12	28597782	28597784	rs200840970	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	12p11.22	CCDC91	rs200840970-A	0.453	2E-7		1.1441647	[1.09-1.2]	Affymetrix [28509962] (imputed)	N
803	chr12	28597782	28597784	rs200840970	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	12p11.22	CCDC91	rs200840970-AT	NR	3E-8		0.107	[0.07-0.144] unit decrease	Affymetrix [28509962] (imputed)	N
803	chr12	28600243	28600244	rs11049611	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12p11.22	CCDC91	rs11049611-T	0.304	3E-32		0.038	[0.032-0.044] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
803	chr12	28619310	28619311	rs1581630	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p11.22	CCDC91	rs1581630-C	0.224493	8E-22		0.0212419	[0.017-0.026] unit increase	NR [13737936] (imputed)	N
803	chr12	28619310	28619311	rs1581630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p11.22		rs1581630-?	NR	6E-25				NR [~ 8900000] (imputed)	N
803	chr12	28619310	28619311	rs1581630	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.22		rs1581630-?	NR	7E-30		0.0267015	[0.022-0.032] unit increase	Affymetrix [20259828] (imputed)	N
803	chr12	28628975	28628976	rs1405812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.22	CCDC91	rs1405812-G	NR	9E-10		0.0230199	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
803	chr12	28634637	28634638	rs11049656	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p11.22	NR	rs11049656-?	NR	1E-7				Affymetrix [NR]	N
803	chr12	28635735	28635736	rs77748726	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs77748726-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
803	chr12	28637114	28637115	rs1511550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs1511550-?	NR	3E-114				NR [~ 8900000] (imputed)	N
803	chr12	28637594	28637595	rs74863965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12p11.22	CCDC91	rs74863965-A	NR	3E-8		0.0252952	[0.016-0.034] unit decrease	Affymetrix [321114] (imputed)	N
803	chr12	28637594	28637595	rs74863965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs74863965-A	NR	3E-10		0.0313665	[0.022-0.041] unit decrease	Affymetrix [321114] (imputed)	N
803	chr12	28637594	28637595	rs74863965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs74863965-A	NR	7E-10		0.0304532	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
803	chr12	28644895	28644895	rs56946212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12p11.22	CCDC91	rs56946212-GGT	NR	4E-18		0.029077	[0.023-0.036] unit decrease	Affymetrix [321114] (imputed)	N
803	chr12	28644895	28644895	rs56946212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12p11.22	CCDC91	rs56946212-GGT	NR	3E-16		0.0249588	[0.019-0.031] unit decrease	Affymetrix [321016] (imputed)	N
803	chr12	28656486	28656487	rs150260458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs150260458-T	NR	7E-9		0.0219266	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
803	chr12	28657167	28657168	rs184429573	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12p11.22	CCDC91	rs184429573-C	0.009	6E-8	(Imidazole derivatives [G01AF])	6.18		Illumina [16500000] (imputed)	N
803	chr12	28672109	28672110	rs11049689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12p11.22	CCDC91	rs11049689-A	NR	9E-21		0.0308889	[0.024-0.037] unit decrease	Affymetrix [323123] (imputed)	N
803	chr12	28672227	28672227	rs150466852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p11.22		rs150466852-GTTTGTTTTGT	NR	8E-66		0.0311	[0.028-0.035] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
803	chr12	28672227	28672227	rs150466852	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.22		rs150466852-?	NR	2E-10		0.0139399	[0.0094-0.0184] unit increase	Affymetrix [20259828] (imputed)	N
803	chr12	28689513	28689514	rs2348418	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	12p11.22	CCDC91	rs2348418-C	0.4536	3E-10		0.042	[0.028-0.056] unit decrease	Affymetrix [27624732] (imputed)	N
803	chr12	28689513	28689514	rs2348418	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	12p11.22	CCDC91	rs2348418-C	0.45	1E-7		0.035	[0.021-0.049] unit decrease	Affymetrix [up to 27624732] (imputed)	N
803	chr12	28693143	28693144	rs7139060	28855172	den Hollander W	2017-08-30	Ann Rheum Dis	Genome-wide association and functional studies identify a role for matrix Gla protein in osteoarthritis of the hand.	Osteoarthritis of the hand	8,743 individuals	2,836 European ancestry individuals, 1,175 individuals	12p11.22	CCDC91	rs7139060-A	0.67	1E-6		0.52	[0.3-0.74] unit decrease	Illumina [~ 11000000] (imputed)	N
804	chr12	28706103	28706104	rs11049711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs11049711-?	NR	6E-25				Affymetrix [~ 8270000] (imputed)	N
804	chr12	28721724	28721725	rs1355471	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	12p11.22	LOC100130792, FAR2	rs1355471-A	0.49	8E-8		1.15	[1.02-1.29]	Illumina [at least 624044] (imputed)	N
804	chr12	28726306	28726307	rs118181489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs118181489-?	NR	5E-25				NR [~ 8900000] (imputed)	N
804	chr12	28737796	28737797	rs11049727	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p11.22	CCDC91	rs11049727-A	0.3031	5E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
804	chr12	28743346	28743347	rs143477080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs143477080-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
804	chr12	28744640	28744641	rs10843215	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.22	CCDC91	rs10843215-G	0.309	8E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
804	chr12	28753399	28753400	rs11049733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p11.22		rs11049733-?	NR	1E-9				NR [~ 8900000] (imputed)	N
804	chr12	28772394	28772395	rs73091543	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p11.22	NR	rs73091543-?		5E-6				Illumina [4322238] (imputed)	N
804	chr12	28815791	28815792	rs1606355	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	12p11.22	LOC100130792	rs1606355-A		2E-6		0.2	[0.12-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
804	chr12	28828011	28828012	rs187058151	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	12p11.22	intergenic	rs187058151-?	NR	5E-6		1.94	[1.40-2.68]	Illumina [654642] (imputed)	N
804	chr12	28833980	28833981	rs4572176	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12p11.22	NR	rs4572176-T	0.6047	8E-6	(Superior Frontal)	0.003413984	[0.0019-0.0049] unit decrease	Affymetrix, Illumina [NR]	N
805	chr12	28945140	28945141	rs61920271	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	12p11.22	NR	rs61920271-?		4E-6		1.97	[1.47-2.64]	Illumina [539473] (imputed)	N
805	chr12	28953956	28953957	rs61917947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p11.22		rs61917947-?	NR	5E-13				NR [~ 8900000] (imputed)	N
806	chr12	28974647	28974648	rs10843247	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	12p11.22	NR	rs10843247-C	0.2592	3E-6		1.19	[1.10-1.27]	Affymetrix [at least 416462] (imputed)	N
806	chr12	28993502	28993503	rs117611356	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	12p11.22	CCDC91	rs117611356-A	0.02	5E-7	(male)	0.07	[-0.0672-0.2072] unit increase	Illumina [11973598] (imputed)	N
806	chr12	29019294	29019295	rs16933441	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	MLSTD1	rs16933441-?	NR	2E-6	(PC 38:4)	0.23267114	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
806	chr12	29022762	29022763	rs11049888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p11.22	RP11-977P2.1	rs11049888-C	0.6789	4E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
806	chr12	29024754	29024755	rs11049890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs11049890-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
806	chr12	29035845	29035846	rs1021056	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12p11.22	NR	rs1021056-A		4E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
806	chr12	29052909	29052910	rs753013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs753013-?	NR	2E-19				NR [~ 8900000] (imputed)	N
806	chr12	29063121	29063122	rs1489081	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p11.22	FAR2	rs1489081-?		3E-14				Affymetrix, Illumina [NR] (imputed)	N
807	chr12	29098256	29098257	rs4930838	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (angry faces)	4,097 European ancestry individuals	NA	12p11.22	intergenic	rs4930838-A	0.156	3E-6		4.65	z score increase	Illumina [2487351] (imputed)	N
807	chr12	29098661	29098661	rs111702909	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.22		rs111702909-?	NR	5E-23		0.0263428	[0.021-0.032] unit increase	Affymetrix [20259828] (imputed)	N
807	chr12	29103863	29103864	rs11049943	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12p11.22	FAR2	rs11049943-G	0.843288	2E-15		0.0202685	[0.015-0.025] unit increase	NR [13737936] (imputed)	N
807	chr12	29103921	29103922	rs11049944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12p11.22		rs11049944-?	NR	1E-19				NR [~ 8900000] (imputed)	N
807	chr12	29118775	29118776	rs10843287	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	12p11.22	NR	rs10843287-?		5E-6		0.26	unit decrease	Illumina [1211988] (imputed)	N
807	chr12	29133979	29133980	rs73068459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12p11.22	NR	rs73068459-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
807	chr12	29157327	29157328	rs10771462	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p11.22	ERGIC2, FAR2	rs10771462-A	NR	5E-16		0.0653969	NR unit increase	NR [NR] (imputed)	N
807	chr12	29167488	29167489	rs7135789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs7135789-?	NR	1E-12				NR [~ 8900000] (imputed)	N
807	chr12	29203548	29203549	rs10743640	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12p11.22	NR	rs10743640-T	0.215177	2E-52		0.0572278	[0.05-0.065] unit decrease	NR [19129689] (imputed)	N
808	chr12	29234026	29234027	rs7976269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12p11.22		rs7976269-?	NR	7E-28				NR [~ 8900000] (imputed)	N
808	chr12	29234026	29234027	rs7976269	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	12p11.22	FAR2	rs7976269-G	NR	6E-14		0.137873	[0.1-0.17] unit decrease	Affymetrix [27512692] (imputed)	N
808	chr12	29239349	29239350	rs995629	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12p11.22	AC012150.1	rs995629-C	0.3721	2E-6		0.0316	[0.019-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr12	29239637	29239638	rs74895226	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12p11.22	FAR2	rs74895226-T	NR	2E-8		0.0975425	NR unit decrease	NR [NR] (imputed)	N
808	chr12	29305798	29305799	rs10843330	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	ERGIC2	rs10843330-?	NR	9E-7	(fructose; glucose; galactose)	0.29541168	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
808	chr12	29358454	29358455	rs7315643	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	12p11.22	FAR2	rs7315643-T	0.7756	2E-7		1.1332666	[1.08-1.19]	Illumina [4946503] (imputed)	N
809	chr12	29383264	29383265	rs118112903	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.22	NR	rs118112903-C	0.03659	3E-8	(IGHM)	0.1427	NR unit increase	Illumina [1671387] (imputed)	N
809	chr12	29406487	29406488	rs7131987	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	12p11.22	FAR2	rs7131987-T	0.32	2E-6		1.08	[0.63-1.53] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
809	chr12	29411115	29411117	rs371334274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12p11.22		rs371334274-T	NR	3E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
809	chr12	29431253	29431254	rs7295056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p11.22	FAR2	rs7295056-A	0.471226	4E-9		0.014434346	[0.0096-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
809	chr12	29435479	29435480	rs2015599	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12p11.22	NR	rs2015599-A	0.535942	6E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix [23037915] (imputed)	N
809	chr12	29435479	29435480	rs2015599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p11.22		rs2015599-A	NR	2E-98		0.0401	[0.036-0.044] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
809	chr12	29435479	29435480	rs2015599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.22	NR	rs2015599-G	0.537213	2E-318				Affymetrix, Illumina [17210439] (imputed)	N
809	chr12	29435479	29435480	rs2015599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p11.22	NR	rs2015599-G	0.542328	1E-314		0.071675	[0.068-0.075] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
809	chr12	29435479	29435480	rs2015599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12p11.22	FAR2, RP11-996F15.2	rs2015599-A	0.4585	4E-34		0.04445876	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
809	chr12	29435479	29435480	rs2015599	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p11.22	FAR2, RP11-996F15.2	rs2015599-A	0.4582	5E-94		0.07424717	[0.067-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
809	chr12	29435479	29435480	rs2015599	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	12p11.22	MLSTD1	rs2015599-A	NR	6E-16		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
809	chr12	29435505	29435505	rs35024086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p11.22	RP11-996F15.2, FAR2	rs35024086-TA	0.457871	8E-86		0.044021808	[0.04-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
809	chr12	29435674	29435675	rs1006409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12p11.22		rs1006409-G	0.566902	8E-22		0.0320142	[0.025-0.039] unit decrease	Illumina [13478928] (imputed)	N
809	chr12	29435674	29435675	rs1006409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p11.22	RP11-996F15.2, FAR2	rs1006409-G	0.457931	2E-40		0.029972358	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
809	chr12	29435674	29435675	rs1006409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.22	NR	rs1006409-G	0.4825	8E-151				Affymetrix, Illumina [24588908] (imputed)	N
809	chr12	29435674	29435675	rs1006409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p11.22	NR	rs1006409-G	0.457308	8E-129		0.044239	[0.041-0.048] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
809	chr12	29435674	29435675	rs1006409	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12p11.22	LOC100506606	rs1006409-?	NR	5E-12		0.02947	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
809	chr12	29437216	29437217	rs10771511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12p11.22		rs10771511-T	0.54	1E-26				Affymetrix [10369434] (imputed)	N
809	chr12	29437216	29437217	rs10771511	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12p11.22		rs10771511-T	0.54	2E-51				Affymetrix [10369434] (imputed)	N
809	chr12	29437216	29437217	rs10771511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p11.22	RP11-996F15.2, FAR2	rs10771511-C	0.457944	1E-165		0.06758433	[0.063-0.072] unit increase	Affymetrix [93095623] (imputed)	N
809	chr12	29437216	29437217	rs10771511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	12p11.22	NR	rs10771511-T	0.436117	9E-21		0.03496	[0.028-0.042] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
809	chr12	29437216	29437217	rs10771511	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12p11.22	FAR2, RP11-996F15.2	rs10771511-C	0.4582	1E-21		0.03439956	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
809	chr12	29437860	29437861	rs7136223	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p11.22	FAR2	rs7136223-A	0.723432	2E-8		0.0125628	[0.0082-0.0169] unit increase	Affymetrix [NR] (imputed)	N
810	chr12	29491527	29491528	rs966541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12p11.22	NR	rs966541-G	NR	1E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
810	chr12	29491527	29491528	rs966541	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	12p11.22		rs966541-A	0.72	6E-10		0.0564	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
810	chr12	29496990	29496991	rs10843390	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFC	5,361 Icelandic ancestry individuals	NA	12p11.22		rs10843390-T	0.3016	6E-14		0.150832	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
810	chr12	29496990	29496991	rs10843390	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	12p11.22		rs10843390-T	0.3016	1E-25		0.214275	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
810	chr12	29496990	29496991	rs10843390	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	12p11.22		rs10843390-T	0.29	5E-10		0.0566	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
810	chr12	29508641	29508642	rs10843391	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p11.22	NR	rs10843391-A	0.715098	3E-8		0.0117868	[0.0076-0.016] unit increase	Affymetrix [15000001]	N
810	chr12	29508641	29508642	rs10843391	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12p11.22		rs10843391-?	NR	1E-12		0.0162065	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
810	chr12	29520016	29520017	rs12831751	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p11.22	ERGIC2	rs12831751-A	0.7143	2E-16		0.0172	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
810	chr12	29520705	29520706	rs10128781	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12p11.22	ERGIC2	rs10128781-C	0.289	9E-25	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
810	chr12	29523956	29523957	rs1156242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.22		rs1156242-?	NR	1E-33				NR [~ 8900000] (imputed)	N
810	chr12	29540308	29540309	rs10843403	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12p11.22	OVCH1-AS1	rs10843403-T	0.390847	8E-12		0.00154468	[0.0011-0.002] unit increase	Affymetrix [13995440] (imputed)	N
810	chr12	29542776	29542777	rs117154046	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12p11.22	Intergenic	rs117154046-A	NR	6E-7	(between families)	5.001	unit increase	Affymetrix [up to 15107142] (imputed)	N
810	chr12	29599214	29599215	rs11608561	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p11.22	OVCH1	rs11608561-C	0.0248180114915719	7E-7	(F_Streptococcaceae_HB)	0.984264	[0.6-1.37] unit decrease	Illumina [7711310] (imputed)	N
810	chr12	29599214	29599215	rs11608561	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12p11.22	OVCH1	rs11608561-C	0.0248180114915719	4E-6	(G_Streptococcus_HB)	0.903979	[0.52-1.29] unit decrease	Illumina [7711310] (imputed)	N
810	chr12	29606987	29606988	rs117719391	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.22	NR	rs117719391-T	0.0331	2E-8	(IGHM)	0.1522	NR unit increase	Illumina [1671387] (imputed)	N
811	chr12	29635046	29635047	rs12816500	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12p11.22		rs12816500-?	NR	3E-6		0.47	[0.27-0.67] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
811	chr12	29676723	29676724	rs181692738	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12p11.22	Intergenic	rs181692738-?		5E-6		2.99	[1.87-4.79]	Illumina [7645193] (imputed)	N
811	chr12	29688201	29688202	rs299453	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		12p11.22	TMTC1	rs299453-?		7E-6				Affymetrix [7000000] (imputed)	N
811	chr12	29752355	29752356	rs377042484	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12p11.22	Intergenic	rs377042484-?		3E-6		1.12	[1.07-1.17]	Illumina [7645193] (imputed)	N
811	chr12	29752355	29752356	rs377042484	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12p11.22	Intergenic	rs377042484-?		4E-6		2.65	[1.75-4.01]	Illumina [7645193] (imputed)	N
812	chr12	29833328	29833329	rs2052678	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	12p11.22	TMTC1	rs2052678-?	0.139	1E-7	(same direction)	1.1627907	[1.1-1.23]	Illumina [up to 6000000] (imputed)	N
812	chr12	29872317	29872318	rs16934812	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	12p11.22	TMTC1	rs16934812-?	NR	7E-6	(EA)	1.339	[NR]	Illumina [up to 531195]	N
813	chr12	29884552	29884553	rs2033794	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	12p11.22	NR	rs2033794-?	NR	8E-6		0.037198	[0.021-0.054] unit increase	Affymetrix [9658292] (imputed)	N
813	chr12	29886852	29886853	rs78264913	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	12p11.22	TMTC1	rs78264913-C	0.05	1E-6		1.53	[NR]	Illumina [5430816] (imputed)	N
813	chr12	29917264	29917265	rs679087	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12p11.22	NR	rs679087-?		3E-9				NR [8377093]	N
813	chr12	29917264	29917265	rs679087	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	12p11.22	NR	rs679087-?	NR	4E-8				Illumina [up to 5582932] (imputed)	N
813	chr12	29917264	29917265	rs679087	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12p11.22	TMTC1	rs679087-?	NR	2E-6				Illumina [8000000] (imputed)	N
813	chr12	29917264	29917265	rs679087	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12p11.22	NR	rs679087-C	NR	3E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
813	chr12	29917264	29917265	rs679087	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12p11.22	TMTC1	rs679087-C	0.663	4E-8		1.0626993	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
813	chr12	29917265	29917266	rs672107	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12p11.22	NR	rs672107-?		3E-9				NR [8377093]	N
813	chr12	29917640	29917641	rs439639	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	12p11.22	NR	rs439639-A	0.6471	2E-8		0.06405479	[0.042-0.086] unit increase	NR [NR]	N
813	chr12	29928387	29928388	rs302321	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12p11.22	NR	rs302321-?	NR	1E-13		1.0701482	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
813	chr12	29928387	29928388	rs302321	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p11.22	TMTC1	rs302321-C	NR	8E-8	(EA)	1.0629252	[1.04-1.09]	Illumina [6627481] (imputed)	N
813	chr12	29928387	29928388	rs302321	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12p11.22	TMTC1	rs302321-C	NR	7E-10		1.0626993	[1.04-1.08]	Illumina [6627481] (imputed)	N
813	chr12	29928387	29928388	rs302321	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12p11.22	TMTC1	rs302321-C	NR	2E-11		1.0672358	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
813	chr12	29950877	29950878	rs302359	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	12p11.22	Intergenic	rs302359-?		3E-6		2.471	[NR]	Affymetrix [492217] (imputed)	N
813	chr12	29984299	29984300	rs139337462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p11.22	Intergenic	rs139337462-G	0.999	5E-6	(AA)	0.296	unit increase	Illumina [NR] (imputed)	N
813	chr12	29985497	29985498	rs138037897	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p11.22	Intergenic	rs138037897-A	0.999	5E-6	(AA)	0.298	unit increase	Illumina [NR] (imputed)	N
813	chr12	30015288	30015289	rs2220130	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Compulsion score in obsessive compulsive disorder	376 Spanish ancestry individuals	NA	12p11.22	TMTC1	rs2220130-?	NR	9E-6		1.246142	NR unit decrease	Illumina [338357]	N
814	chr12	30061319	30061320	rs548169927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	12p11.22		rs548169927-G	NR	2E-8		1.1971	[0.78-1.62] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
814	chr12	30104141	30104142	rs2046383	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12p11.22	TMTC1	rs2046383-?	0.30	3E-6	(AA)	1.39	[0.97-1.97]	Affymetrix, Illumina [2478304] (imputed)	N
814	chr12	30104196	30104197	rs188945888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12p11.22	U3	rs188945888-T	0.0093	4E-6		0.2196	[0.13-0.31] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
814	chr12	30113882	30113883	rs1463605	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	12p11.22	intergenic	rs1463605-?	NR	7E-8	(biologic age)			Affymetrix [70897]	N
814	chr12	30127206	30127207	rs7971912	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs7971912-?	NR	7E-6	(LPE 18:0)	0.20018837	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
814	chr12	30127206	30127207	rs7971912	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs7971912-?	NR	4E-6	(TAG 54:9)	0.20576495	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
814	chr12	30134615	30134616	rs12825533	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs12825533-?	NR	2E-6	(LPE 18:1)	0.24544431	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
814	chr12	30139746	30139747	rs1909169	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs1909169-?	NR	7E-6	(isoleucine)	0.17900209	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
815	chr12	30155752	30155753	rs10843582	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	12p11.22	LOC105369715	rs10843582-G	0.32	6E-6		0.09	unit increase	Illumina [5510858] (imputed)	N
815	chr12	30157591	30157592	rs12826568	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs12826568-?	NR	9E-6	(LPC 18:0)	0.20484386	[0.11-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
815	chr12	30157591	30157592	rs12826568	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.22	OVCH1	rs12826568-?	NR	5E-6	(LPE 22:6)	0.21066383	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
815	chr12	30170974	30170975	rs141403748	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12p11.22		rs141403748-?	NR	5E-6		1.2789932	[0.73-1.83] unit decrease	Illumina [9875426] (imputed)	N
816	chr12	30308867	30308868	rs12313180	32222710	Hosgood Iii HD	2020-03-27	Respiration	PRDM15 Is Associated with Risk of Chronic Obstructive Pulmonary Disease in a Rural Population in Chile.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	12p11.22	Intergenic	rs12313180-?	NR	8E-6				Illumina [455564] (imputed)	N
816	chr12	30341933	30341934	rs10843647	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	12p11.22	intergenic	rs10843647-?		4E-6	(SG)	0.17	[0.092-0.248] unit increase	Illumina [693128]	N
816	chr12	30353974	30353975	rs11613048	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	12p11.22	intergenic	rs11613048-A	NR	8E-6	(females)	0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
817	chr12	30415408	30415409	rs2700036	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	12p11.22	IPO8	rs2700036-?	0.314	4E-6		13.4	[7.78-19.02] unit decrease	Illumina [7663546] (imputed)	N
817	chr12	30479357	30479358	rs2099149	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	12p11.22		rs2099149-T	0.81	5E-7		0.17	[0.10-0.24] unit decrease	Affymetrix, Illumina [6444471] (imputed)	N
818	chr12	30560844	30560845	rs12297354	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Receptive language ability	400 European ancestry children	NA	12p11.22	intergenic	rs12297354-A	NR	7E-6		10.25	NR unit decrease	Illumina [299604]	N
818	chr12	30659219	30659220	rs11050931	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	12p11.21	NR	rs11050931-?	NR	7E-7				Illumina [NR]	N
819	chr12	30765132	30765133	rs11050994	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.21	CAPRIN2	rs11050994-?	NR	2E-6	(TAG 56:4)	0.45900372	[0.27-0.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
819	chr12	30773330	30773330	rs11413983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12p11.21		rs11413983-GT	0.514953	2E-16		0.01836967	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
819	chr12	30775113	30775113	rs554596604	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12p11.21	intergenic	rs554596604-CAAAAAAAAA	0.4912	3E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix [18391927] (imputed)	N
819	chr12	30776412	30776413	rs4931356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12p11.21		rs4931356-?	NR	4E-14				NR [~ 8900000] (imputed)	N
819	chr12	30783183	30783184	rs4082413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs4082413-G	0.49888	2E-15				Affymetrix, Illumina [23467995] (imputed)	N
819	chr12	30783183	30783184	rs4082413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p11.21	NR	rs4082413-G	0.512206	2E-16		0.01535	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
819	chr12	30783474	30783475	rs11051005	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12p11.21	NR	rs11051005-A	0.76	3E-15		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
819	chr12	30783474	30783475	rs11051005	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12p11.21	NR	rs11051005-A	0.76	5E-8				Affymetrix [2446094] (imputed)	N
819	chr12	30785184	30785185	rs2289300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.21		rs2289300-?	NR	5E-12				NR [~ 8900000] (imputed)	N
819	chr12	30791863	30791864	rs10771746	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12p11.21	NR	rs10771746-?		3E-9		0.0142821	[0.0096-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
819	chr12	30799469	30799470	rs2882760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12p11.21		rs2882760-A	NR	2E-13		0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
820	chr12	30804672	30804673	rs10743727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p11.21		rs10743727-G	NR	2E-11		0.0137	[0.0098-0.0176] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
820	chr12	30813876	30813881	rs367810241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12p11.21	IPO8	rs367810241-T	0.455215	6E-15		0.017928623	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
820	chr12	30814183	30814184	rs142754383	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	12p11.21	IPO8	rs142754383-?	NR	9E-13				Illumina [4404269] (imputed)	N
820	chr12	30814183	30814184	rs142754383	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	12p11.21	IPO8	rs142754383-?	NR	8E-12	(African)			Illumina [4404269] (imputed)	N
820	chr12	30858968	30858969	rs78814167	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	12p11.21	NR	rs78814167-T	0.01742	3E-6		0.5471	[0.32-0.77] unit decrease	Illumina [10677593] (imputed)	N
820	chr12	30860556	30860557	rs16906714	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	12p11.21	intergenic	rs16906714-T	4.0E-4	6E-8	(O'Connor Slope)	1.257	[NR] unit increase	Illumina [546355]	N
820	chr12	30865509	30865510	rs10843817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12p11.21	NR	rs10843817-A	0.7605	2E-13		0.0152	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
820	chr12	30865509	30865510	rs10843817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p11.21	NA	rs10843817-A	0.7604	6E-10		0.0127	[0.0088-0.0166] unit increase	NR [~ 27400000] (imputed)	N
820	chr12	30872177	30872178	rs73079962	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	12p11.21	CAPRIN2	rs73079962-A	NR	4E-9	(female)	0.9525	[0.94-0.97]	Affymetrix [9869154] (imputed)	N
820	chr12	30873115	30873116	rs73079970	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs73079970-T	NR	1E-12		0.911		Affymetrix [9869154] (imputed)	N
820	chr12	30884091	30884092	rs17739338	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		CAPRIN2	rs17739338-T	NR	3E-22		0.94	[0.93-0.95]	Affymetrix [9869154] (imputed)	N
820	chr12	30895716	30895717	rs11051048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.21	NR	rs11051048-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
820	chr12	30895716	30895717	rs11051048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p11.21		rs11051048-?	NR	2E-11				NR [~ 8900000] (imputed)	N
820	chr12	30897999	30898000	rs11051052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12p11.21		rs11051052-A	0.527043	3E-9		0.0119806	[0.008-0.0159] unit increase	Illumina [13479295] (imputed)	N
820	chr12	30897999	30898000	rs11051052	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12p11.21	CAPRIN2	rs11051052-?	NR	3E-8		0.01590642	[0.01-0.022] unit increase	Illumina [27896057] (imputed)	N
820	chr12	30914667	30914668	rs11051061	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12p11.21	CAPRIN2	rs11051061-A	0.26795500000000005	3E-14		0.026403	[0.02-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
821	chr12	30946068	30946069	rs33202	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	12p11.21	NR	rs33202-G	NR	8E-6		0.1379	[0.077-0.198] SD units increase	NR [10700000] (imputed)	N
821	chr12	30965224	30965225	rs117283853	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	12p11.21	NR	rs117283853-G	NR	9E-6		0.3772	[0.21-0.54] SD units decrease	NR [10700000] (imputed)	N
821	chr12	30975468	30975469	rs7134911	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	12p11.21	Intergenic	rs7134911-?		9E-6		1.3542795	[NR]	Affymetrix [492217] (imputed)	N
821	chr12	31037654	31037655	rs76567987	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12p11.21	TSPAN11	rs76567987-A	0.84	2E-17		0.02	unit increase	Affymetrix [8928767] (imputed)	N
822	chr12	31085398	31085399	rs11051170	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12p11.21	TSPAN11	rs11051170-T	0.878	2E-6	(AA)	0.188	NR unit increase	Illumina [NR] (imputed)	N
822	chr12	31129442	31129443	rs187708125	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	12p11.21	TSPAN11	rs187708125-A	NR	2E-6		0.33870825	[0.2-0.48] unit increase	Affymetrix [9576485] (imputed)	N
822	chr12	31131711	31131712	rs35097	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p11.21	NR	rs35097-?	NR	4E-7				Affymetrix [NR]	N
822	chr12	31136689	31136690	rs117993590	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12p11.21		rs117993590-?	NR	2E-6		0.4195014	[0.25-0.59] unit increase	Illumina [9906551] (imputed)	N
822	chr12	31136689	31136690	rs117993590	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12p11.21		rs117993590-?	NR	2E-6		0.4376923	[0.26-0.62] unit increase	Illumina [9901720] (imputed)	N
822	chr12	31137311	31137312	rs55916253	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	12p11.21	TSPAN11	rs55916253-A	0.11	4E-6		1.63		Illumina [8974355] (imputed)	N
823	chr12	31256994	31256995	rs11545332	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	12p11.21	NR	rs11545332-G	NR	3E-6		0.27	[0.16-0.38] unit increase	Illumina [6319684] (imputed)	N
824	chr12	31360639	31360640	rs7960884	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	12p11.21	FAM60A	rs7960884-A	0.27	4E-6	(EA)	1.09	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
824	chr12	31367855	31367856	rs10771813	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p11.21	NR	rs10771813-C	0.5442	3E-8		0.0259	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
824	chr12	31412668	31412669	rs11610422	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12p11.21	intergenic	rs11610422-A	0.8306	1E-6		0.0361	[0.021-0.051] unit decrease	NR [8041861] (imputed)	N
824	chr12	31417018	31417019	rs78345706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	12p11.21		rs78345706-A	0.179285	2E-10		0.0357028	[0.025-0.047] unit increase	Illumina [13466143] (imputed)	N
824	chr12	31417018	31417019	rs78345706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p11.21		rs78345706-A	NR	2E-10		0.0357	[0.025-0.047] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
824	chr12	31441178	31441179	rs80234489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p11.21		rs80234489-C	NR	2E-12		0.0243	[0.018-0.031] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
824	chr12	31441178	31441179	rs80234489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12p11.21		rs80234489-C	0.195607	2E-12		0.0243372	[0.018-0.031] unit decrease	Illumina [13479924] (imputed)	N
824	chr12	31441178	31441179	rs80234489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	12p11.21		rs80234489-C	0.195454	4E-13		0.0294587	[0.022-0.037] unit decrease	Illumina [13479178] (imputed)	N
824	chr12	31441178	31441179	rs80234489	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p11.21	NR	rs80234489-C	0.1797	6E-18		0.0966	[0.075-0.119] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
824	chr12	31441178	31441179	rs80234489	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12p11.21	SINHCAF, DENND5B	rs80234489-C	0.17	4E-32		1.11	[1.09-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
824	chr12	31441178	31441179	rs80234489	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12p11.21	FAM60A	rs80234489-C	0.191	1E-11	(Japanese)	0.031	[0.021-0.041] unit decrease	Illumina [6108953] (imputed)	N
825	chr12	31466612	31466613	rs147538848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p11.21		rs147538848-A	NR	6E-13		0.0296	[0.022-0.038] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
825	chr12	31466612	31466613	rs147538848	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	12p11.21	NR	rs147538848-G	0.8121	3E-17		0.0993	[0.076-0.122] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
825	chr12	31466612	31466613	rs147538848	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	12p11.21	FAM60A	rs147538848-?	NR	8E-10		0.05771	[0.039-0.076] unit increase novel	Illumina [6108953] (imputed)	N
825	chr12	31466612	31466613	rs147538848	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	12p11.21	FAM60A	rs147538848-A	0.184	8E-10	(Japanese)	1.11	[1.07-1.15]	Illumina [7521072] (imputed)	N
825	chr12	31466612	31466613	rs147538848	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	12p11.21	FAM60A	rs147538848-?	NR	8E-13		1.11	[ 1.08 - 1.14 ]	Illumina [7521072] (imputed)	N
825	chr12	31476941	31476945	rs3214606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p11.21		rs3214606-C	0.199369686	1E-28		0.12995233	[0.11-0.15] unit increase	Illumina [13429769] (imputed)	N
825	chr12	31476941	31476945	rs3214606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12p11.21		rs3214606-C	NR	8E-29		0.1273	[0.1-0.15] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
825	chr12	31476941	31476945	rs3214606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12p11.21		rs3214606-C	0.204114887	4E-16		0.10226443	[0.078-0.127] unit increase	Illumina [13134967] (imputed)	N
825	chr12	31476941	31476945	rs3214606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12p11.21		rs3214606-C	NR	4E-16		0.1023	[0.078-0.127] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
825	chr12	31476941	31476945	rs3214606	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12p11.21		rs3214606-C	0.193425294	3E-25		1.1226496	[1.098380535-1.147454891]	Illumina [8919992] (imputed)	N
825	chr12	31476941	31476945	rs3214606	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	12p11.21	FAM60A	rs3214606-C	0.2	2E-17		1.11	1.08-1.13	Illumina [12557761] (imputed)	N
825	chr12	31504315	31504316	rs11051398	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	12p11.21		rs11051398-T	0.52808	8E-9		0.1509	[0.1-0.202] unit decrease	Illumina [18238311] (imputed)	N
825	chr12	31523855	31523856	rs793191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p11.21	Intergenic	rs793191-A	0.7397	2E-10	(MTAG)	0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
825	chr12	31530325	31530325	rs142458453	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	12p11.21	DENND5B	rs142458453-T	NR	5E-7	(males)	0.104	[0.063-0.145] unit increase	Illumina [7531543] (imputed)	N
825	chr12	31553037	31553038	rs708212	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12p11.21	DENND5B	rs708212-?	NR	8E-9		0.013338349	[0.0088-0.0179] unit increase	NR [7306098]	N
825	chr12	31575195	31575196	rs576104914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12p11.21	NR	rs576104914-T	NR	3E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
826	chr12	31594812	31594813	rs77969132	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	12p11.21	DENND5B	rs77969132-T	0.015	5E-8		1.44	[1.27-1.65]	Affymetrix, Illumina [up to 10700000] (imputed)	N
826	chr12	31618837	31618838	rs73082491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs73082491-G	NR	2E-9		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
826	chr12	31628782	31628783	rs2617178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12p11.21	Intergenic	rs2617178-T	0.2453	1E-12	(MTAG)	0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr12	31629418	31629418	rs35480701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12p11.21		rs35480701-GA	NR	2E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
827	chr12	31735696	31735697	rs7974437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.21		rs7974437-?	NR	5E-15				NR [~ 8900000] (imputed)	N
827	chr12	31746046	31746047	rs7311970	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12p11.21	DENND5B	rs7311970-?		8E-10				Affymetrix, Illumina [NR] (imputed)	N
827	chr12	31789672	31789673	rs7979755	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12p11.21	Intergenic	rs7979755-C	0.7983	5E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
827	chr12	31791272	31791273	rs73088360	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12p11.21	Intergenic	rs73088360-C	0.198	5E-10	(MTAG)	0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
827	chr12	31797809	31797810	rs117262688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs117262688-C	NR	1E-10		0.0192	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
827	chr12	31818531	31818532	rs183745979	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	12p11.21	METTL20	rs183745979-C	0.004	8E-6		5.06	[2.48-10.33]	Illumina [7959153] (imputed)	N
828	chr12	31851785	31851786	rs142983199	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	12p11.21	AMN1	rs142983199-?		4E-6				Affymetrix [394222]	N
828	chr12	31891056	31891056	rs1194514725	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12p11.21	NR	rs1194514725-T	0.08537	3E-8	(CTSS)	0.004808	NR unit increase	Illumina [1671387] (imputed)	N
828	chr12	31926376	31926377	rs1259633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs1259633-C	NR	8E-10		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
828	chr12	31934633	31934634	rs61929404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs61929404-A	NR	6E-16		0.0475	[0.036-0.059] unit increase	Affymetrix [9000000] (imputed)	N
828	chr12	31937983	31937984	rs189260099	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - metformin (UKB data field 20003_1140884600)	11,358 European ancestry cases, 444,918 European ancestry controls	NA	12p11.21		rs189260099-T	0.001796	1E-9		1.05	[0.71-1.39] unit increase	NR [11842647] (imputed)	N
828	chr12	31946950	31946951	rs16918961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs16918961-C	NR	1E-14		0.0301	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
829	chr12	31994739	31994740	rs10844026	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	12p11.21	NR	rs10844026-A	0.24	8E-7		0.95	unit decrease	Illumina [8591557] (imputed)	N
829	chr12	31997634	31997635	rs9738365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12p11.21		rs9738365-A	NR	1E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
829	chr12	31997634	31997635	rs9738365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12p11.21	NR	rs9738365-A	NR	5E-14		0.0203	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
829	chr12	31997634	31997635	rs9738365	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12p11.21	NR	rs9738365-C	0.733529	3E-16		0.0187927	[0.014-0.023] unit decrease	NR [NR]	N
829	chr12	31998993	31998994	rs2128614	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	12p11.21	LOC440093	rs2128614-?	NR	9E-6	(EA)	1.87	[1.05-2.69] unit increase	Affymetrix, Illumina [2033301]	N
829	chr12	32024255	32024256	rs1419311	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	12p11.21	NR	rs1419311-?	NR	5E-9		1.28	NR	Illumina [456414]	N
829	chr12	32039756	32039757	rs76963786	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	12p11.21	NR	rs76963786-C		4E-7		0.2865	[0.18-0.4] SD units increase	NR [10700000] (imputed)	N
829	chr12	32061452	32061453	rs112673195	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	12p11.21	intergenic	rs112673195-?	NR	3E-7		1.61	[1.34-1.94]	Illumina [9077347] (imputed)	N
829	chr12	32063680	32063681	rs75165201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs75165201-T	NR	2E-10		0.0398	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
829	chr12	32070094	32070095	rs1150997	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	12p11.21	NR	rs1150997-A	0.72	4E-6		4.64	[NR] z score decrease	Illumina [9009554] (imputed)	N
829	chr12	32080822	32080823	rs1797811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs1797811-T	NR	5E-22		0.0256	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
829	chr12	32091087	32091088	rs1259879	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	12p11.21	NR	rs1259879-?	NR	7E-6		0.3401	[0.19-0.49] unit decrease	Illumina [at least 560000] (imputed)	N
829	chr12	32097359	32097360	rs1151008	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		12p11.21	AMN1	rs1151008-G	NR	1E-6		0.144	[0.085-0.203] unit decrease	Illumina [~ 2500000] (imputed)	N
829	chr12	32103632	32103633	rs11051696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs11051696-T	NR	4E-13		0.0223	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
829	chr12	32108676	32108677	rs74073660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs74073660-G	NR	4E-17		0.0343	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
830	chr12	32116946	32116947	rs12231559	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	12p11.21	KIAA1551	rs12231559-T	0.206128	6E-6		0.209341	[0.12-0.3] unit increase	NR [7263501] (imputed)	N
830	chr12	32117200	32117200	rs34357090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12p11.21	KIAA1551	rs34357090-GT	0.402227	2E-15		0.018800894	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
830	chr12	32117242	32117243	rs10771891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs10771891-T	0.438831	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
830	chr12	32117242	32117243	rs10771891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12p11.21	NR	rs10771891-T	0.435757	4E-12		0.013237	[0.0095-0.017] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
830	chr12	32119115	32119116	rs10844074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12p11.21	KIAA1551	rs10844074-C	0.19488	4E-9		0.016573124	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
830	chr12	32119115	32119116	rs10844074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12p11.21		rs10844074-?	NR	6E-11				NR [~ 8900000] (imputed)	N
830	chr12	32134637	32134638	rs2166807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs2166807-C	0.79779	8E-18				Affymetrix, Illumina [19872809] (imputed)	N
830	chr12	32135440	32135441	rs3759301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12p11.21	NR	rs3759301-C	NR	2E-13		0.0383	[0.028-0.048] unit increase	Affymetrix [9000000] (imputed)	N
830	chr12	32138923	32138924	rs7302975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12p11.21	KIAA1551	rs7302975-C	0.779478	2E-15		0.021148704	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr12	32138923	32138924	rs7302975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12p11.21		rs7302975-?	NR	4E-18				NR [~ 8900000] (imputed)	N
830	chr12	32141494	32141495	rs4931000	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	12p11.21	KIAA1551	rs4931000-G	0.22	2E-11		1.16	[1.11-1.22]	Illumina [at least 371504] (imputed)	N
830	chr12	32143168	32143169	rs4931002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12p11.21		rs4931002-A	NR	7E-15		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
830	chr12	32143168	32143169	rs4931002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12p11.21	KIAA1551	rs4931002-A	0.779322	9E-17		0.022186602	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr12	32143168	32143169	rs4931002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12p11.21	NR	rs4931002-A	0.779279	2E-19		0.02158	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
830	chr12	32143276	32143277	rs10844084	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	12p11.21	NR	rs10844084-T	0.2579	4E-6		0.0103	[0.006-0.0146] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
830	chr12	32144999	32145000	rs4931005	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12p11.21	NR	rs4931005-A	0.213317	2E-8		0.0130497	[0.0085-0.0176] unit decrease	Affymetrix [15000001]	N
830	chr12	32150242	32150243	rs4931594	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	C12orf35	rs4931594-C	0.242	5E-6	(Total T4 )	0.03	[NR] ug/dL increase	Illumina [899892]	N
830	chr12	32177519	32177520	rs35118688	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	12p11.21	NR	rs35118688-A	0.01628	3E-6		0.568	[0.33-0.8] unit increase	Illumina [10677593] (imputed)	N
830	chr12	32196969	32196970	rs7953516	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis in sarcoidosis	260 African American cases, 513 African American controls	NA	12p11.21	NR	rs7953516-T	NR	3E-7		1.93	[1.50-2.48]	Illumina [13976150] (imputed)	N
830	chr12	32203850	32203851	rs11051754	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	12p11.21	NR	rs11051754-C	NR	1E-6		1.628	[1.34-1.98]	Illumina [13976150] (imputed)	N
830	chr12	32205935	32205936	rs138832348	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12p11.21	NR	rs138832348-T	0.0108	8E-7		21.58	[13.02-30.14] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
830	chr12	32242446	32242447	rs77669894	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	12p11.21	BICD1	rs77669894-A		4E-8		0.3283	[0.21-0.45] unit increase	Illumina [NR]	N
831	chr12	32249458	32249459	rs111484648	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12p11.21	NR	rs111484648-?	NR	1E-8				Illumina [7760689] (imputed)	N
831	chr12	32261238	32261239	rs1144713	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	BICD1	rs1144713-A	0.23	7E-6	(Urinary free norepinephrine: creatinine)	0.02	[NR] unit increase	Illumina [899892]	N
832	chr12	32380500	32380501	rs10844154	20709820	Kong X	2010-08-13	Am J Respir Crit Care Med	Genome-wide association study identifies BICD1 as a susceptibility gene for emphysema.	Emphysema-related traits	2,383 European ancestry cases	NA	12p11.21	BICD1	rs10844154-C	0.58	6E-7	(qualitative)	1.46	[NR]	Illumina [499578]	N
832	chr12	32380500	32380501	rs10844154	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	12p11.21	NR	rs10844154-C	0.54	4E-6	(females)	1.87	[NR] kg increase	Illumina [318237]	N
832	chr12	32399868	32399869	rs326641	31407531	Do AN	2019-08-13	Mol Genet Genomic Med	Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.	Left ventricular mass x antihypertensive treatment interaction	up to 2,068 African American individuals	up to 613 European ancestry individuals	12p11.21	BICD1	rs326641-?	NR	1E-7	(dCCB versus TD, AA)	0.208	[0.13-0.28] unit increase	Affymetrix, Illumina [up to 2191657] (imputed)	N
832	chr12	32418250	32418251	rs161981	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p11.21	BICD1	rs161981-?		4E-6				Illumina [4322238] (imputed)	N
832	chr12	32436408	32436409	rs708224	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	12p11.21	BICD1	rs708224-A	0.66	3E-7	(allelic)	1.32	[1.19-1.47]	Illumina [420236]	N
832	chr12	32467192	32467193	rs4540912	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			BICD1	rs4540912-A	0.2899	4E-10		0.0560289	[0.039-0.074] unit increase	Affymetrix [8165723] (imputed)	N
832	chr12	32469600	32469601	rs10844179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12p11.21		rs10844179-?	NR	3E-9				NR [~ 8900000] (imputed)	N
832	chr12	32469600	32469601	rs10844179	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12p11.21		rs10844179-A	0.2257	5E-10		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
832	chr12	32469600	32469601	rs10844179	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12p11.21	Intergenic	rs10844179-A	0.2257	2E-9	(MTAG)	0.0094	[0.0063-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
832	chr12	32474116	32474117	rs1972438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12p11.21		rs1972438-A	NR	3E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
832	chr12	32476726	32476727	rs261902	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Normalized brain volume	753 European ancestry cases, 883 European ancestry controls	NA	12p11.21	BICD1	rs261902-?	0.16	4E-6			[NR]	Illumina [551642]	N
832	chr12	32483348	32483349	rs11051943	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12p11.21		rs11051943-C	0.23	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
833	chr12	32513887	32513888	rs10771940	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	12p11.21		rs10771940-?	NR	7E-6		0.19	[0.11-0.27] unit decrease	Affymetrix [NR] (imputed)	N
833	chr12	32525242	32525243	rs7307156	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12p11.21	DHFR, MTRNR2L2, MSH3	rs7307156-?		8E-10				NR [7428630] (imputed)	N
833	chr12	32537487	32537488	rs11051970	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	12p11.21	intergenic	rs11051970-?	0.34	1E-6	(CSJC, RF+)	2.08	[NR] unit decrease	Illumina [534053]	N
833	chr12	32545351	32545352	rs2632345	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	12p11.21	intergenic	rs2632345-C	0.23	1E-7	(male)	0.257	[0.16-0.35] unit decrease	Illumina [6380737] (imputed)	N
833	chr12	32552768	32552769	rs2651369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12p11.21		rs2651369-G	NR	1E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
833	chr12	32552768	32552769	rs2651369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs2651369-G	0.369326	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
833	chr12	32552768	32552769	rs2651369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12p11.21	NR	rs2651369-G	0.325619	1E-12		0.014146	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
833	chr12	32582857	32582858	rs2651374	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Figural/spatial cognitive ability	354 Saudi Arabian ancestry children	NA	12p11.21	FGD4	rs2651374-?	NR	2E-6		5.1	[3.04-7.16] unit decrease	Illumina [285340]	N
834	chr12	32640590	32640591	rs112595860	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	12p11.21	intergenic	rs112595860-C	0.2172	5E-7	(model 1)	1.136622	[1.04-1.23]	Illumina [11601089] (imputed)	N
834	chr12	32657472	32657473	rs10771962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12p11.21		rs10771962-?	NR	2E-8				NR [~ 8900000] (imputed)	N
834	chr12	32664436	32664437	rs61927245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p11.21	FGD4	rs61927245-T	0.0753	1E-19		0.06263878	[0.049-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
834	chr12	32666244	32666245	rs11052036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p11.21	FGD4	rs11052036-T	0.075926	1E-17		0.0384143	[0.03-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
834	chr12	32692232	32692233	rs5006548	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12p11.21	NR	rs5006548-T	0.1649	2E-8	(East Asian)	0.0855	[0.056-0.115] unit increase	Illumina [6200000] (imputed)	N
834	chr12	32716987	32716988	rs61926167	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	12p11.21	FGD4	rs61926167-T	NR	3E-7		0.03032	[0.019-0.042] unit increase	Illumina [NR] (imputed)	N
835	chr12	32792973	32792974	rs10771973	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	12p11.21	FGD4	rs10771973-?		2E-6		0.451	[NR] unit increase	Illumina [6030476] (imputed)	N
835	chr12	32810758	32810759	rs181609621	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12p11.21	FGD4	rs181609621-A	0.9882	8E-11		0.4232	[0.3-0.55] unit decrease	NR [7784415] (imputed)	N
835	chr12	32810758	32810759	rs181609621	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12p11.21	Intergenic	rs181609621-C	1.0	3E-6	(AA)	2.19	NR unit increase	Illumina [NR] (imputed)	N
835	chr12	32818659	32818665	rs150273160	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12p11.21	intergenic	rs150273160-T	0.1543	4E-23		0.05116044	[0.041-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
835	chr12	32819179	32819180	rs10844279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs10844279-T	0.860357	2E-78				Affymetrix, Illumina [17210439] (imputed)	N
835	chr12	32819179	32819180	rs10844279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12p11.21	NR	rs10844279-T	0.860662	7E-80		0.051556	[0.046-0.057] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
835	chr12	32842598	32842603	rs66716653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12p11.21	DNM1L	rs66716653-A	0.127916	3E-21		0.032662287	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr12	32849806	32849807	rs201323148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12p11.21	DNM1L	rs201323148-A	0.136454	2E-36		0.043750882	[0.037-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr12	32870008	32870009	rs116174979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12p11.21	DNM1L	rs116174979-G	0.118808	3E-9		0.021810126	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
835	chr12	32871230	32871231	rs10844312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12p11.21		rs10844312-A	NR	1E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
836	chr12	32903147	32903148	rs10844339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12p11.21	NR	rs10844339-G	0.124653	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
836	chr12	32904790	32904791	rs10771989	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12p11.21	NR	rs10771989-T	0.13986	9E-12		0.017924	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
836	chr12	32935266	32935267	rs191699548	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12p11.21	YARS2	rs191699548-A	1.95208216529471E-7	3E-6		26.83	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
836	chr12	32950366	32950367	rs11052242	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	12p11.21		rs11052242-G	0.87	3E-9		0.05	[0.034-0.066] unit decrease	Affymetrix [NR]	N
836	chr12	32972939	32972940	rs1454934	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		12p11.21	PKP2	rs1454934-T	0.16	4E-8		1.16	1.1-1.22	Affymetrix, Illumina [at least 3187278] (imputed)	N
836	chr12	32978436	32978437	rs12809354	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12p11.21	PKP2	rs12809354-C	0.144	3E-14		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
836	chr12	32978436	32978437	rs12809354	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p11.21	PKP2	rs12809354-C	0.15	5E-16		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
836	chr12	32978436	32978437	rs12809354	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12p11.21	PKP2	rs12809354-C	0.15	3E-16	(EA)	1.09	[1.07-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
836	chr12	32990418	32990419	rs34791177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12p11.21		rs34791177-T	NR	5E-10		0.0842	[0.058-0.111] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
836	chr12	33017042	33017043	rs1454933	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	PKP2	rs1454933-C	0.169	9E-6	(Fat mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
836	chr12	33017042	33017043	rs1454933	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	PKP2	rs1454933-C	0.169	3E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
836	chr12	33017042	33017043	rs1454933	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12p11.21	PKP2	rs1454933-C	0.169	3E-6	(Energy storage )	0.04	[NR] kcal/d increase	Illumina [899892]	N
837	chr12	33035482	33035483	rs6488099	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT5)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	12p11.21	PKP2	rs6488099-?	NR	1E-8		0.29	[0.19-0.39] unit increase	Affymetrix [2135235] (imputed)	N
837	chr12	33060225	33060226	rs11052294	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12p11.21	PKP2	rs11052294-A	0.38015625	2E-6	(PKP2, 14067_6_3)	0.12845077	[0.076-0.181] unit increase	Illumina [> 1000000] (imputed)	N
837	chr12	33091017	33091018	rs11052322	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.21	YARS2	rs11052322-?	NR	5E-6	(leucine)	0.17871884	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
837	chr12	33115819	33115820	rs4346053	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer	112 cases	NA	12p11.21	PKP2	rs4346053-?		4E-6		0.1033	[0.062-0.144] unit decrease	Affymetrix [418365]	N
838	chr12	33228623	33228624	rs138895122	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	12p11.21	PKP2	rs138895122-T		6E-12		0.6116	[0.44-0.79] unit increase	Illumina [NR]	N
838	chr12	33231220	33231221	rs10844446	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12p11.21	SYT10	rs10844446-?	NR	8E-6	(alpha hydroxybutyric acid)	0.24103673	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
838	chr12	33288172	33288173	rs1992676	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	12p11.21	PKP2	rs1992676-T	0.360335770234987	7E-6	(AA)	0.3408	[0.19-0.49] unit increase	Illumina [at least 988306] (imputed)	N
839	chr12	33301804	33301805	rs144847051	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	12p11.21	PKP2, SYT10	rs144847051-?	NR	4E-21		2.2371366	[1.92-2.61]	Illumina [12438219] (imputed)	N
839	chr12	33302437	33302438	rs10772040	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12p11.21	NR	rs10772040-?	NR	1E-9				Affymetrix [NR]	N
839	chr12	33378497	33378498	rs9971845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12p11.1		rs9971845-?	NR	3E-9				NR [~ 8900000] (imputed)	N
839	chr12	33381893	33381894	rs28851196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12p11.1		rs28851196-T	NR	4E-11		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
839	chr12	33398115	33398116	rs77072854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12p11.1		rs77072854-G	NR	2E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
839	chr12	33410779	33410780	rs10844518	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12p11.1	NR	rs10844518-G	0.2872	9E-11		0.0326	[0.023-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
839	chr12	33410854	33410855	rs10844519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12p11.1	NR	rs10844519-G	0.4092	1E-12		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
840	chr12	33459553	33459554	rs4551851	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12p11.1	intergenic	rs4551851-A	0.571	3E-9		0.0148	[0.0099-0.0197] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
840	chr12	33510114	33510115	rs4587807	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p11.1		rs4587807-A	0.5087	1E-9		0.095154025	[0.064-0.126] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
840	chr12	33510114	33510115	rs4587807	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12p11.1		rs4587807-A	0.5087	8E-12		0.093710735	[0.066-0.121] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
840	chr12	33529287	33529288	rs9888363	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	12p11.1	SYT10	rs9888363-C	0.614	6E-9		6.601	[4.38-8.82] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
840	chr12	33537386	33537387	rs1343676	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12p11.1	SYT10	rs1343676-T	0.494	4E-12				Affymetrix [~ 7800000] (imputed)	N
840	chr12	33537386	33537387	rs1343676	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	SYT10	rs1343676-T	0.494	2E-11		0.407	[0.29-0.52] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	9E-9	(302 ms)	0.0334418	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	9E-10	(306 ms)	0.0352404	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	8E-9	(296 ms)	0.0332119	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	7E-9	(304 ms)	0.0335474	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	5E-10	(312 ms)	0.0355863	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	5E-10	(310 ms)	0.0354558	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	4E-9	(326 ms)	0.0331464	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	4E-9	(300 ms)	0.0339849	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	4E-9	(298 ms)	0.0343148	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	4E-10	(320 ms)	0.0359219	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	3E-8	(292 ms)	0.0322871	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	3E-10	(308 ms)	0.0359721	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	2E-9	(330 ms)	0.0339724	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	2E-9	(328 ms)	0.0341636	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33551840	33551841	rs7315695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12p11.1	SYT10	rs7315695-G	0.397418	2E-9	(322 ms)	0.0342282	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
840	chr12	33553780	33553781	rs11052682	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	12p11.1	NR	rs11052682-?		5E-6		20.1464	[11.57-28.72] unit decrease	NR [NR] (imputed)	N
841	chr12	33556356	33556357	rs12424970	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	12p11.1	NR	rs12424970-T	0.506	7E-6		0.0159	[0.009-0.0228] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
841	chr12	33568902	33568903	rs11052689	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10	rs11052689-C	0.5394	2E-14		1.0290183		Affymetrix [11880941] (imputed)	N
841	chr12	33576989	33576990	rs7980799	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	12p11.1	SYT10	rs7980799-A	0.391851	3E-20	(EA)	0.038742	[0.031-0.047] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33576989	33576990	rs7980799	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	12p11.1	SYT10	rs7980799-A	0.391851	2E-22		0.038742	[0.031-0.047] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33576989	33576990	rs7980799	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12p11.1	SYT10	rs7980799-A	0.401	6E-24		0.377	[0.29-0.47] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422225	8E-54		0.0920963	[0.08-0.104] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422337	2E-57		0.0953853	[0.084-0.107] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422355	4E-56		0.094175	[0.082-0.106] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422327	3E-58		0.0960815	[0.084-0.108] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422389	5E-66		0.102836	[0.091-0.115] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33593126	33593127	rs6488162	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	12p11.1	SYT10, ALG10	rs6488162-T	0.422303	3E-30		0.0677484	[0.056-0.079] unit decrease	Affymetrix [509255] (imputed)	N
841	chr12	33598774	33598775	rs1351682	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	NR	rs1351682-G	0.467	7E-17	(males)	0.609	[0.47-0.75] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
841	chr12	33598774	33598775	rs1351682	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	NR	rs1351682-G	0.467	5E-13	(females)	0.569	[0.41-0.72] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
841	chr12	33598774	33598775	rs1351682	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	12p11.1	SYT10	rs1351682-G	0.43700000000000006	6E-15	(EA)	0.073237	[0.055-0.091] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33598774	33598775	rs1351682	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	12p11.1	SYT10	rs1351682-G	0.43700000000000006	2E-14		0.073237	[0.055-0.091] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33622898	33622899	rs1384598	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	12p11.1	SYT10	rs1384598-T	0.431905	7E-13	(EA)	0.022636	[0.016-0.029] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33622898	33622899	rs1384598	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	12p11.1	SYT10	rs1384598-T	0.431905	3E-15		0.022636	[0.016-0.029] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
841	chr12	33633598	33633599	rs7303356	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	70,783 European ancestry individuals	NA	12p11.1		rs7303356-G	0.49	2E-10		0.006	[0.004-0.008] unit decrease	Affymetrix [8918919] (imputed)	N
841	chr12	33642463	33642464	rs7297506	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p11.1	NR	rs7297506-?		5E-6				Illumina [4322238] (imputed)	N
841	chr12	33650656	33650657	rs9739432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12p11.1		rs9739432-C	NR	5E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
841	chr12	33676706	33676707	rs7314943	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10, ALG10	rs7314943-A	0.5785	4E-22		1.0359		Affymetrix [11880941] (imputed)	N
841	chr12	33680802	33680803	rs2389217	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12p11.1	NR	rs2389217-?	NR	2E-6				Illumina [7427422] (imputed)	N
841	chr12	33682404	33682405	rs1994135	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12p11.1	SYT10	rs1994135-T	0.518601	5E-11		0.42212	[0.3-0.55] unit decrease	Affymetrix [~ 7800000] (imputed)	N
841	chr12	33682404	33682405	rs1994135	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	SYT10	rs1994135-T	0.518607	3E-10		0.380379	[0.26-0.5] bpm increase	Affymetrix [~ 7800000] (imputed)	N
841	chr12	33682404	33682405	rs1994135	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12p11.1	SYT10	rs1994135-C	0.47	7E-34		0.4	[0.34-0.46] unit increase	Affymetrix [19941912] (imputed)	N
842	chr12	33701165	33701166	rs9300212	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	12p11.1	intergenic	rs9300212-?	NR	8E-6	(WRAT)			Affymetrix [70897]	N
842	chr12	33713833	33713834	rs7308214	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.1	NR	rs7308214-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
842	chr12	33715932	33715933	rs7316878	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12p11.1	SYT10	rs7316878-T	0.566337	1E-8		0.0115239	[0.0076-0.0155] unit decrease	Affymetrix [NR] (imputed)	N
842	chr12	33730367	33730368	rs10844642	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12p11.1	NR	rs10844642-A	0.61	4E-14		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
842	chr12	33730367	33730368	rs10844642	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12p11.1	NR	rs10844642-A	0.61	5E-8				Affymetrix [2446094] (imputed)	N
842	chr12	33734270	33734271	rs1384590	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	NR	rs1384590-C	0.642	6E-11	(males)	0.498	[0.35-0.65] bpm increase	Affymetrix [~ 7800000] (imputed)	N
842	chr12	33734270	33734271	rs1384590	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	NR	rs1384590-C	0.642	5E-17	(females)	0.69	[0.53-0.85] bpm increase	Affymetrix [~ 7800000] (imputed)	N
842	chr12	33734782	33734783	rs2218650	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12p11.1	SYT10	rs2218650-A	0.641	1E-26		0.602	[0.49-0.71] bpm increase	Affymetrix [~ 7800000] (imputed)	N
842	chr12	33734934	33734935	rs2200155	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12p11.1	NA	rs2200155-A	0.3722	5E-13		0.0133	[0.0098-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
842	chr12	33752807	33752808	rs1873011	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12p11.1	NR	rs1873011-?		6E-6				Illumina [4322238] (imputed)	N
843	chr12	33837787	33837788	rs4394914	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10, ALG10	rs4394914-G	0.5054000000000001	1E-27		1.0399334		Affymetrix [11880941] (imputed)	N
843	chr12	33897794	33897795	rs10772116	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p11.1	NR	rs10772116-?	NR	1E-6		0.0084125	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
843	chr12	33905292	33905293	rs1906136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12p11.1		rs1906136-?	NR	1E-19				NR [~ 8900000] (imputed)	N
843	chr12	33937938	33937939	rs1405024	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10, ALG10	rs1405024-A	0.506	7E-31		1.0431		Affymetrix [11880941] (imputed)	N
844	chr12	33970681	33970682	rs12310956	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12p11.1	NR	rs12310956-?	NR	1E-6				Illumina [7427422] (imputed)	N
844	chr12	34051764	34051765	rs13377754	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12p11.1		rs13377754-T	0.6123	8E-27		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
844	chr12	34051764	34051765	rs13377754	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10, ALG10	rs13377754-T	0.6104	3E-40		1.0511		Affymetrix [11880941] (imputed)	N
844	chr12	34051764	34051765	rs13377754	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12p11.1	SYT10, ALG10	rs13377754-T	0.6104	3E-40		1.0496954		Affymetrix [11880941] (imputed)	N
845	chr12	34089972	34089973	rs61931739	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12p11.1	NR	rs61931739-?	NR	3E-6				Illumina [7427422] (imputed)	N
845	chr12	34169874	34169875	rs1705773	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	SYT10, ALG10	rs1705773-A	0.6062	3E-35		1.0476		Affymetrix [11880941] (imputed)	N
846	chr12	34260141	34260142	rs7297799	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12p11.1	NR	rs7297799-T	0.3989	1E-12		0.0128	[0.0093-0.0163] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
846	chr12	34276941	34276942	rs11833948	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	ALG10	rs11833948-T	0.6035	3E-35		1.0482		Affymetrix [11880941] (imputed)	N
847	chr12	34352941	34352942	rs116973965	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12p11.1	intergenic	rs116973965-A	0.011	8E-7		8.121	[3.542-18.62]	Illumina [7585874] (imputed)	N
847	chr12	34366372	34366373	rs7978702	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12p11.1	intergenic	rs7978702-?	NR	3E-8		0.0173966	[0.011-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
847	chr12	34454300	34454301	rs7314457	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	ALG10	rs7314457-A	0.5264	1E-33		1.0457		Affymetrix [11880941] (imputed)	N
847	chr12	34457253	34457254	rs9739724	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p11.1	NR	rs9739724-?	NR	7E-7		0.0086402	[0.0052-0.012] unit decrease	Affymetrix [805426] (imputed)	N
848	chr12	34548612	34548613	rs34353125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12p11.1	RP13-7D7.1	rs34353125-A	NR	1E-8		0.0185194	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
848	chr12	34548612	34548613	rs34353125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12p11.1	RP13-7D7.1	rs34353125-A	NR	2E-8		0.0181295	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
848	chr12	34557832	34557833	rs3924704	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p11.1	NR	rs3924704-?	NR	8E-7		0.0085755	[0.0052-0.012] unit decrease	Affymetrix [805426] (imputed)	N
848	chr12	34576359	34576360	rs9705901	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	ALG10	rs9705901-C	0.4081	7E-28		1.0423181		Affymetrix [11880941] (imputed)	N
849	chr12	34611171	34611172	rs9668760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12p11.1		rs9668760-?	NR	2E-12				NR [~ 8900000] (imputed)	N
849	chr12	34636449	34636450	rs12372466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12p11.1	NR	rs12372466-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
849	chr12	34648825	34648826	rs9705479	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	12p11.1	ALG10	rs9705479-T	0.4949963446475195	9E-6	(AA)	0.3593	[0.2-0.52] unit decrease	Illumina [at least 988306] (imputed)	N
849	chr12	34659034	34659035	rs61933589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12p11.1		rs61933589-?	NR	1E-10				NR [~ 8900000] (imputed)	N
849	chr12	34680007	34680008	rs9739246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p11.1	NR	rs9739246-?	NR	7E-7		0.0086772	[0.0052-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
849	chr12	34683674	34683675	rs11526064	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	ALG10	rs11526064-T	0.5254	1E-31		1.0450413		Affymetrix [11880941] (imputed)	N
850	chr12	34793720	34793721	rs9739706	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12p11.1	ALG10	rs9739706-T	0.4051	8E-28		1.0425		Affymetrix [11880941] (imputed)	N
850	chr12	34821441	34821442	rs139386986	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12p11.1	ALG10	rs139386986-C	0.907872	2E-9		0.0215163	[0.015-0.029] unit increase	Affymetrix [NR] (imputed)	N
850	chr12	34826951	34826952	rs11610973	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12p11.1		rs11610973-T	0.8737	3E-11		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
850	chr12	34840660	34840661	rs9669269	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12p11.1	NR	rs9669269-?	NR	2E-6		0.0083375	[0.0049-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
873	chr12	37856813	37856814	rs28972590	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q11	NR	rs28972590-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
873	chr12	37867774	37867775	rs2048061	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q11	ALG10B	rs2048061-C	0.4062	4E-28		1.0424267		Affymetrix [11880941] (imputed)	N
874	chr12	37896287	37896288	rs4002684	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q11	ALG10B	rs4002684-A	0.595745	4E-8		0.0111972	[0.0072-0.0152] unit increase	Affymetrix [NR] (imputed)	N
874	chr12	37930101	37930102	rs10880689	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q11	ALG10	rs10880689-A	0.595743	5E-10		0.341181	[0.23-0.45] bpm increase	Affymetrix [~ 7800000] (imputed)	N
874	chr12	37930101	37930102	rs10880689	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12q11	ALG10B	rs10880689-G	0.6	8E-10		0.2084	[0.14-0.27] unit increase	Affymetrix [19941912] (imputed)	N
875	chr12	38033463	38033464	rs8189580	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q11	ALG10B	rs8189580-C	0.44999999999999996	5E-31		1.0444955		Affymetrix [11880941] (imputed)	N
875	chr12	38045344	38045345	rs11520042	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q11	NR	rs11520042-C	0.3455	8E-9		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
875	chr12	38066270	38066271	rs11520077	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q11	NR	rs11520077-?	NR	2E-7		0.0090058	[0.0056-0.0124] unit decrease	Affymetrix [805426] (imputed)	N
875	chr12	38109808	38109809	rs11495590	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q11	ALG10B	rs11495590-T	0.3842	8E-28		1.0424		Affymetrix [11880941] (imputed)	N
875	chr12	38132171	38132172	rs1733410	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q11	NR	rs1733410-?	NR	3E-6				Illumina [7427422] (imputed)	N
875	chr12	38139969	38139970	rs11495337	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q11	RP11-125N22.2	rs11495337-T	NR	3E-8		0.0180776	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
876	chr12	38147629	38147630	rs1283298	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q11	ALG10B	rs1283298-G	0.45009999999999994	2E-31		1.0439503		Affymetrix [11880941] (imputed)	N
876	chr12	38191128	38191129	rs146647050	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12q11	intergenic	rs146647050-T	0.019	2E-6		5.931	[2.871-12.25]	Illumina [7585874] (imputed)	N
876	chr12	38214610	38214611	rs4533105	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q12	ALG10B	rs4533105-T	0.57	2E-13		0.404	[0.3-0.51] bpm increase	Affymetrix [~ 7800000] (imputed)	N
876	chr12	38227574	38227575	rs11514048	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs11514048-?	NR	4E-6		0.0080204	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
876	chr12	38264485	38264486	rs11180986	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B	rs11180986-G	0.4829	2E-33		1.0454783		Affymetrix [11880941] (imputed)	N
877	chr12	38281260	38281261	rs2197308	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	NR	rs2197308-?	NR	6E-7				Illumina [7427422] (imputed)	N
877	chr12	38285011	38285012	rs4436614	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q12	ALG10B	rs4436614-A	0.5335	1E-10		0.0136065	[0.0095-0.0177] unit increase	Affymetrix [11880941] (imputed)	N
877	chr12	38328695	38328696	rs10880262	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs10880262-?	NR	6E-7		0.0087256	[0.0053-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
877	chr12	38345647	38345648	rs8189480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q12	RP11-297L6.2	rs8189480-C	NR	2E-9		0.0187734	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
877	chr12	38345647	38345648	rs8189480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q12	RP11-297L6.2	rs8189480-C	NR	4E-9		0.0184778	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
877	chr12	38345647	38345648	rs8189480	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12q12	NR	rs8189480-T	0.4963	3E-10		0.0113	[0.0078-0.0148] unit increase	NR [~ 27400000] (imputed)	N
877	chr12	38370109	38370110	rs10880321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q12	NR	rs10880321-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
877	chr12	38370109	38370110	rs10880321	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q12	NR	rs10880321-G	0.61	1E-13		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
877	chr12	38370109	38370110	rs10880321	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q12	NR	rs10880321-G	0.61	5E-8				Affymetrix [2446094] (imputed)	N
877	chr12	38370109	38370110	rs10880321	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q12	NR	rs10880321-C	0.379	2E-9	(females)	0.49	[0.33-0.65] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
878	chr12	38439202	38439203	rs2204008	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	12q12	PSCA	rs2294008-T	0.46	3E-15		1.13	[1.10-1.16]	Illumina [462190]	N
878	chr12	38441178	38441179	rs7314177	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs7314177-?	NR	7E-6		0.0078372	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
878	chr12	38444929	38444930	rs116900763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs116900763-T	0.01045	2E-8	(TGM2)	1.978	NR unit increase	Illumina [1671387] (imputed)	N
878	chr12	38450420	38450421	rs11182052	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	12q12	ALG10B	rs11182052-T	0.324	6E-6		1.33	[1.48-3.99]	Affymetrix [up to 27494467] (imputed)	N
878	chr12	38458905	38458906	rs4882315	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B	rs4882315-C	0.4929	7E-36		1.0472301		Affymetrix [11880941] (imputed)	N
878	chr12	38514871	38514872	rs1969363	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	NR	rs1969363-?	NR	2E-7				Illumina [7427422] (imputed)	N
878	chr12	38526386	38526387	rs11182428	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12q12		rs11182428-T	0.480005	1E-10		0.013	[0.0091-0.0169] unit increase	NR [7250403] (imputed)	N
879	chr12	38593618	38593619	rs144094653	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12q12	intergenic	rs144094653-A	0.014	4E-8		7.675	[3.704-15.91]	Illumina [7585874] (imputed)	N
879	chr12	38602910	38602911	rs9668081	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	12q12	NR	rs9668081-T	0.47058	5E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix [16668957] (imputed)	N
879	chr12	38616580	38616581	rs35011311	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	12q12	ALG10B	rs35011311-G		3E-14		0.0077	[0.0057-0.0097] unit increase	Affymetrix [13304133] (imputed)	N
879	chr12	38616580	38616581	rs35011311	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	12q12	NR	rs35011311-G	0.734239	2E-8		1.006	[1.004, 1.008]	Affymetrix [39302896] (imputed)	N
879	chr12	38616964	38616965	rs1843892	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs1843892-?	NR	9E-7		0.008566	[0.0051-0.012] unit decrease	Affymetrix [805426] (imputed)	N
879	chr12	38633692	38633693	rs11182930	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B	rs11182930-A	0.539	8E-41		1.0509		Affymetrix [11880941] (imputed)	N
880	chr12	38684120	38684121	rs7955128	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q12		rs7955128-?	NR	1E-10		0.0130617	[0.0091-0.0171] unit decrease	NR [6912294] (imputed)	N
880	chr12	38710522	38710523	rs7315028	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	12q12	NR	rs7315028-G	0.882	2E-8		0.124	[0.081-0.167] unit increase	Affymetrix, Illumina [945603] (imputed)	N
880	chr12	38726136	38726137	rs6582618	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	ALG10B	rs6582618-G	0.52	2E-8		1.07	[1.04-1.09]	Illumina [7427422] (imputed)	N
880	chr12	38737309	38737310	rs1843888	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B, CPNE8	rs1843888-A	0.5433	2E-43		1.052		Affymetrix [11880941] (imputed)	N
880	chr12	38737309	38737310	rs1843888	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q12	ALG10B, CPNE8	rs1843888-A	0.5433	2E-43		1.0526386		Affymetrix [11880941] (imputed)	N
880	chr12	38743507	38743508	rs6582630	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	12q12	ALG10B	rs6582630-?	0.38	1E-6		2.82	[NR]	Illumina [866399]	N
880	chr12	38764558	38764559	rs34354917	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	12q12	NR	rs34354917-C	NR	2E-6		0.666	unit increase	Affymetrix [14661600] (imputed)	N
880	chr12	38793433	38793434	rs150862851	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12q12	intergenic	rs150862851-G	0.012	2E-6		7.435	[3.255-16.98]	Illumina [7585874] (imputed)	N
881	chr12	38863669	38863670	rs12822662	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	NR	rs12822662-?	NR	3E-8				Illumina [7427422] (imputed)	N
881	chr12	38868776	38868777	rs12427164	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B, CPNE8	rs12427164-A	0.5416	4E-43		1.053		Affymetrix [11880941] (imputed)	N
881	chr12	38908388	38908389	rs7313852	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q12		rs7313852-A	0.435	1E-29		0.025	[0.021-0.029] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
881	chr12	38908388	38908389	rs7313852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q12		rs7313852-?	NR	9E-29				NR [~ 8900000] (imputed)	N
882	chr12	38929340	38929341	rs35933007	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	12q12	NR	rs35933007-?		9E-9		0.0151917	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
882	chr12	38932314	38932315	rs2653772	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	12q12	NR	rs2653772-T	NR	4E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
882	chr12	38932314	38932315	rs2653772	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	12q12	NR	rs2653772-T	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
882	chr12	38975000	38975001	rs35817541	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ALG10B, CPNE8	rs35817541-T	0.5526	1E-40		1.0507		Affymetrix [11880941] (imputed)	N
882	chr12	39018672	39018673	rs9325144	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q12	NR	rs9325144-T	0.348	1E-8		0.00788455	[0.0052-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
882	chr12	39018672	39018673	rs9325144	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	NR	rs9325144-?	NR	5E-7				Illumina [7427422] (imputed)	N
883	chr12	39064726	39064727	rs35326581	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	12q12	CPNE8	rs35326581-T	0.7425	8E-7		0.0058	[0.0034-0.0082] unit increase	Affymetrix [~ 7740000] (imputed)	N
883	chr12	39100012	39100013	rs143302148	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12q12	CPNE8	rs143302148-T	0.011	2E-6		7.507	[3.286-17.15]	Illumina [7585874] (imputed)	N
883	chr12	39106730	39106731	rs826838	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12q12	CPNE8	rs826838-C	0.452883	8E-7		0.317797	[0.19-0.44] unit increase	Affymetrix [~ 7800000] (imputed)	N
883	chr12	39106730	39106731	rs826838	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q12	CPNE8	rs826838-C	0.452891	2E-7		0.282528	[0.18-0.39] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
883	chr12	39106730	39106731	rs826838	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q12	CPNE8	rs826838-C	0.443	4E-9		0.234	[0.15-0.32] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
883	chr12	39129678	39129679	rs7979541	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	12q12	CPNE8	rs7979541-T	0.55	3E-6		0.019	[0.011-0.027] unit increase	Affymetrix [~ 10446505] (imputed)	N
883	chr12	39150751	39150752	rs7312879	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	CPNE8	rs7312879-G	0.5495	5E-43		1.0521885		Affymetrix [11880941] (imputed)	N
883	chr12	39167961	39167962	rs1996880	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q12	NR	rs1996880-A	0.846	2E-11		0.0100166	[0.0071-0.013] unit decrease	NR [9732723] (imputed)	N
884	chr12	39201469	39201470	rs185880008	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	12q12	CPNE8	rs185880008-T	NR	4E-7	(Japanese)	1.18733	[1.11096-1.26895]	Illumina [at least 6195093] (imputed)	N
884	chr12	39225990	39225991	rs4595586	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q12	NR	rs4595586-?	NR	1E-7				Illumina [7427422] (imputed)	N
884	chr12	39247776	39247777	rs17464772	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q12	NR	rs17464772-A	0.3508	1E-11		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
884	chr12	39253107	39253108	rs11169838	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q12	NR	rs11169838-C	0.680712065091395	8E-6	(IGP35)	0.1671	[0.094-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
884	chr12	39253107	39253108	rs11169838	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q12	NR	rs11169838-C	0.680521641139804	2E-6	(IGP31)	0.1764	[0.1-0.25] unit increase	Illumina [~ 2500000] (imputed)	N
884	chr12	39257767	39257768	rs7314227	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	CPNE8	rs7314227-A	0.499	2E-39		1.0491		Affymetrix [11880941] (imputed)	N
884	chr12	39298422	39298423	rs2138543	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 6am-8am)	88,411 European ancestry individuals	NA	12q12		rs2138543-A	0.477	4E-11		0.03	unit increase	Affymetrix [8951705] (imputed)	N
884	chr12	39298422	39298423	rs2138543	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Principal component 2)	88,411 European ancestry individuals	NA	12q12		rs2138543-A	0.477	2E-9		0.029	unit decrease	Affymetrix [8951705] (imputed)	N
885	chr12	39364536	39364537	rs61939612	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	12q12	CPNE8	rs61939612-T	0.373	3E-6		0.072	[0.043-0.101] unit increase	Affymetrix [7287191] (imputed)	N
885	chr12	39364595	39364596	rs1400283	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	CPNE8, KIF21A	rs1400283-C	0.4402	6E-29		1.0423		Affymetrix [11880941] (imputed)	N
885	chr12	39391155	39391156	rs61937565	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	12q12	CPNE8	rs61937565-T	0.83	6E-7		1.369863	[1.25-1.49]	Affymetrix, Illumina [~ 8500000] (imputed)	N
885	chr12	39398170	39398171	rs61937587	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	12q12	CPNE8	rs61937587-G	0.79	5E-7	(adjusted for severity)	1.369863	[1.25-1.49]	Affymetrix, Illumina [~ 8500000] (imputed)	N
885	chr12	39430047	39430048	rs11170468	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q12	NA	rs11170468-A	0.7826	1E-11		0.013	[0.0093-0.0167] unit increase	NR [~ 27400000] (imputed)	N
885	chr12	39430047	39430048	rs11170468	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q12	NR	rs11170468-A	NR	8E-13		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
885	chr12	39430047	39430048	rs11170468	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q12	CPNE8	rs11170468-A	0.765	1E-7		0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
885	chr12	39430047	39430048	rs11170468	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q12	CPNE8	rs11170468-A	0.762	7E-8	(EA)	0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
885	chr12	39444502	39444503	rs117554039	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q12		rs117554039-A	0.9121	5E-8		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
886	chr12	39455488	39455489	rs1349254	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	12q12	intergenic	rs1349254-A	0.19	9E-6	(female)	0.0623	[0.035-0.09] unit decrease	Illumina [6380737] (imputed)	N
886	chr12	39465690	39465691	rs7315607	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	CPNE8, KIF21A	rs7315607-A	0.3439	1E-17		1.0346		Affymetrix [11880941] (imputed)	N
886	chr12	39483501	39483502	rs61937656	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q12	CPNE8	rs61937656-G	0.773702	3E-12		0.0117234	[0.0084-0.015] unit increase	Affymetrix [12370749]	N
886	chr12	39522906	39522907	rs10783624	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q12	NR	rs10783624-C	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
887	chr12	39588321	39588322	rs12828063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q12		rs12828063-T	0.691	5E-9		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
887	chr12	39683385	39683386	rs112205873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs112205873-T	0.0122	5E-9	(S100A8)	0.2206	NR unit increase	Illumina [1671387] (imputed)	N
887	chr12	39683385	39683386	rs112205873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs112205873-T	0.0122	1E-8	(S100A9)	0.1682	NR unit increase	Illumina [1671387] (imputed)	N
889	chr12	39952308	39952309	rs11514215	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs11514215-A	0.03136	3E-8	(DDB1)	0.1321	NR unit increase	Illumina [1671387] (imputed)	N
891	chr12	40139749	40139750	rs187503002	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EXOSC1	5,357 Icelandic ancestry individuals	NA	12q12		rs187503002-G	0.009813	1E-17		0.205152	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
892	chr12	40276302	40276303	rs75036080	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension	1,262 European ancestry cases,  9,608 European ancestry controls	NA	12q12	SLC2A13	rs75036080-?	0.02	3E-6		2.0576131	[1.93-2.19]	NR [~ 2000000] (imputed)	N
892	chr12	40341084	40341085	rs1005956	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	12q12	SLC2A13	rs1005956-C	0.41	3E-6		0.13	[0.071-0.189] unit decrease	Illumina [2380486] (imputed)	N
892	chr12	40341501	40341502	rs28370599	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q12	SLC2A13	rs28370599-?		3E-6				Illumina [4322238] (imputed)	N
892	chr12	40352995	40352996	rs10877840	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	12q12	SLC2A13	rs10877840-?	NR	1E-6		1.15	[NR]	Illumina [2500000] (imputed)	N
892	chr12	40354243	40354244	rs11174478	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	12q12	SLC2A13	rs11174478-A	0.4	2E-6		0.1	[0.061-0.139] unit decrease	Illumina [2380486] (imputed)	N
893	chr12	40378646	40378647	rs7138679	31707593	Kulminski AM	2019-11-09	Geroscience	Polygenic risk score for disability and insights into disability-related molecular mechanisms.	Disability (impaired activities of daily living)	7,544 European ancestry cases, 4,619 European ancestry controls	5,006 European ancestry cases, 6,899 European ancestry controls	12q12	SLC2A13	rs7138679-C	0.39	9E-6		0.098	[0.055-0.141] unit decrease	Illumina [NR]	N
893	chr12	40380582	40380583	rs11174608	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	12q12		rs11174608-?	NR	7E-6				Illumina [7401356] (imputed)	N
893	chr12	40413304	40413305	rs28370664	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	12q12	SLC2A13	rs28370664-A		7E-26		0.4475	[0.36-0.53] unit increase	Illumina [NR]	N
893	chr12	40413697	40413698	rs2242367	33341150	Jabbari E	2020-12-17	Lancet Neurol	Genetic determinants of survival in progressive supranuclear palsy: a genome-wide association study.	Survival in progressive supranuclear palsy	1,001 European ancestry individuals	415 European ancestry individuals			rs2242367-A	0.282	1E-10		1.37	[1.25-1.51]	Illumina [4817946] (imputed)	N
893	chr12	40421116	40421117	rs10877955	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12q12	NR	rs10877955-G	0.936511	5E-13		0.028411	[0.021-0.036] unit decrease	Affymetrix [15000001]	N
893	chr12	40425086	40425087	rs11174812	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	12q12	LRRK2	rs11174812-A	0.746	2E-7		1.14	[NR]	Illumina [4577171] (imputed)	N
893	chr12	40428560	40428561	rs1994090	19915576	Satake W	2009-11-15	Nat Genet	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	12q12	LRRK2	rs1994090-?	NR	3E-8		1.39	[1.24-1.56]	Illumina [435470]	N
893	chr12	40458383	40458384	rs1384236	28011712	Foo JN	2016-12-22	Hum Mol Genet	Genome-wide association study of Parkinson's disease in East Asians.	Parkinson's disease	779 Han Chinese ancestry cases, 13,227 Han Chinese ancestry controls	5,125 Asian ancestry cases, 17,604 Asian ancestry controls	12q12	LRRK2, SLC2A13, C12orf40	rs1384236-C	0.035	8E-12		1.551	NR	Illumina [2402394] (imputed)	N
894	chr12	40528431	40528432	rs12422544	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q12	NR	rs12422544-G	0.01915	3E-6	(EA)	1.2153448	[1.13-1.3]	Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr12	40528431	40528432	rs12422544	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q12	NR	rs12422544-G	0.01915	4E-25	(EA)	1.4551913	[1.38-1.53]	Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr12	40531690	40531691	rs1388585	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q12	NR	rs1388585-?	NR	7E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr12	40533336	40533337	rs2253736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q12		rs2253736-A	NR	3E-9		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
894	chr12	40533336	40533337	rs2253736	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q12	LRRK2	rs2253736-?	NR	2E-9		0.0284	[0.02-0.037] unit increase	Affymetrix [5701386] (imputed)	N
894	chr12	40547378	40547379	rs9652020	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	12q12	intergenic	rs9652020-?	NR	8E-6		1.2658228	[NR]	Affymetrix [up to 10996499] (imputed)	N
894	chr12	40550701	40550702	rs17442910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q12		rs17442910-C	NR	4E-15		0.12	[0.09-0.15] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
894	chr12	40550701	40550702	rs17442910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q12	AC079630.2	rs17442910-C	0.006714	8E-10		0.09067821	[0.062-0.12] unit increase	Affymetrix [93095623] (imputed)	N
894	chr12	40550701	40550702	rs17442910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q12	NR	rs17442910-T	0.993647	5E-21				Affymetrix, Illumina [24588908] (imputed)	N
894	chr12	40550701	40550702	rs17442910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q12	NR	rs17442910-T	0.993484	5E-23		0.12302	[0.099-0.147] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
894	chr12	40568432	40568433	rs11175458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	12q12		rs11175458-G	0.310594	1E-10		0.0240838	[0.017-0.031] unit decrease	Illumina [13476165] (imputed)	N
894	chr12	40581330	40581331	rs12369765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q12		rs12369765-T	NR	2E-17		0.0244	[0.019-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
894	chr12	40601807	40601808	rs2723261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q12	LRRK2, AC079630.4	rs2723261-T	0.658001	3E-12		0.016278153	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
894	chr12	40601939	40601940	rs11175593	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	12q12	MUC19, LRRK2	rs11175593-T	0.02	3E-10		1.54	[NR]	Affymetrix, Illumina [635547] (imputed)	N
894	chr12	40606000	40606001	rs2172241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q12	NR	rs2172241-T	NR	1E-9		0.0235	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
894	chr12	40606662	40606663	rs1907631	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q12	NR	rs1907631-T	NR	9E-9		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
894	chr12	40606662	40606663	rs1907631	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q12	NR	rs1907631-T	NR	2E-10		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
894	chr12	40614433	40614434	rs76904798	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	12q12		rs76904798-T	0.13	1E-20		0.117	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
894	chr12	40614433	40614434	rs76904798	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	LRRK2	rs76904798-T	0.1444	2E-28		0.1439	[0.12-0.17] unit increase	NR [7784415] (imputed)	N
894	chr12	40614433	40614434	rs76904798	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	12q12	LRRK2	rs76904798-T	0.137	1E-19		1.15	[1.12-1.19]	Illumina [11933700] (imputed)	N
894	chr12	40614433	40614434	rs76904798	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	12q12	LRRK2	rs76904798-T	0.143	5E-14		1.155	[1.12-1.19]	Illumina [7893274] (imputed)	N
894	chr12	40620807	40620808	rs1491942	22438815	Lill CM	2012-03-15	PLoS Genet	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 cases, 2,061 controls	Up to 98,080 European and Asian ancestry individuals	12q12	LRRK2	rs1491942-?	0.21	6E-15	(EA)	1.17	[1.13-1.22]	Illumina, Perlegen [7123920] (imputed)	N
894	chr12	40620807	40620808	rs1491942	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	12q12	LRRK2	rs1491942-G	0.08	6E-14		1.27	[1.21-1.33]	Illumina [7689524] (imputed)	N
894	chr12	40623754	40623755	rs11175656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q12	NR	rs11175656-G	0.532278	3E-17				Affymetrix, Illumina [17210439] (imputed)	N
894	chr12	40623754	40623755	rs11175656	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q12	NR	rs11175656-G	0.524876	4E-18		0.016504	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
895	chr12	40632593	40632594	rs10506148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q12		rs10506148-A	0.284517	3E-8		0.0122679	[0.0079-0.0166] unit decrease	Illumina [13479295] (imputed)	N
895	chr12	40653509	40653510	rs28903073	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	12q12	LRRK2	rs28903073-?	NR	1E-39		3.1152647	[2.68-3.62]	Illumina [12438219] (imputed)	N
895	chr12	40674613	40674614	rs538387289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q12	LRRK2	rs538387289-T	0.00572499999999998	3E-11		0.1102515	[0.078-0.143] unit increase	Affymetrix [93095623] (imputed)	N
895	chr12	40687954	40687955	rs529898481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q12	LRRK2	rs529898481-G	0.00242100000000001	4E-13		0.23027566	[0.17-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr12	40687954	40687955	rs529898481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q12	LRRK2	rs529898481-G	0.00242200000000004	1E-20		0.29541564	[0.23-0.36] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr12	40695094	40695095	rs10878340	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q12	LRRK2, MUC19, SLC2A13, RPL30P13	rs10878340-A	NR	8E-7	(daytime napping duration)	0.07931	[0.048-0.111] unit decrease	Affymetrix [7141204] (imputed)	N
895	chr12	40725280	40725281	rs116447010	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	12q12		rs116447010-A	0.9752	8E-6		0.0273667	[0.015-0.039] unit increase	Illumina [13900000] (imputed)	N
895	chr12	40734201	40734202	rs34637584	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	LRRK2	rs34637584-A	0.0015	4E-148		2.4289	[2.25-2.61] unit increase	NR [7784415] (imputed)	N
895	chr12	40734201	40734202	rs34637584	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	12q12	LRRK2	rs34637584-A	0.002	2E-28		9.62	[6.43-14.37]	Illumina [522782]	N
895	chr12	40740222	40740223	rs148319899	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	12q12	SLC2A13, LRRK2, MUC19	rs148319899-?		3E-15				Illumina [9725440] (imputed)	N
895	chr12	40740222	40740223	rs148319899	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	12q12	SLC2A13, LRRK2, MUC19	rs148319899-?		6E-20				Illumina [9560910] (imputed)	N
895	chr12	40744393	40744394	rs7313895	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12q12	LRRK2	rs7313895-?	NR	4E-17	(subset analysis)			Illumina [130052]	N
895	chr12	40756471	40756472	rs4768236	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q12	NR	rs4768236-C	0.3295	2E-15	(EA)	1.0849894	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
895	chr12	40756471	40756472	rs4768236	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q12	NR	rs4768236-C	0.3295	4E-21	(EA)	1.1238824	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
895	chr12	40757327	40757328	rs34778348	22438815	Lill CM	2012-03-15	PLoS Genet	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 cases, 2,061 controls	Up to 98,080 European and Asian ancestry individuals	12q12	LRRK2	rs34778348-?	0.04	3E-21	(Asian)	2.23	[1.89-2.63]	Illumina, Perlegen [7123920] (imputed)	N
895	chr12	40760630	40760631	rs17466626	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	12q12	LRRK2	rs17466626-G	0.02	3E-10				Illumina [7347414] (imputed)	N
896	chr12	40767361	40767362	rs10467147	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q12	LRRK2	rs10467147-A	0.196	5E-6	(C-peptide )	0.03	[NR] ng/mL increase	Illumina [899892]	N
896	chr12	40773683	40773684	rs190807041	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	12q12	LRRK2	rs190807041-G	0.01044	7E-11		2.03403	[1.42-2.65] unit increase	Illumina [9911207] (imputed)	N
896	chr12	40773874	40773875	rs11176342	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q12	NR	rs11176342-T	0.9251	5E-6		0.025775196	[0.015-0.037] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
896	chr12	40786731	40786732	rs7957367	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs7957367-?	NR	8E-6		0.0077609	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
896	chr12	40792299	40792300	rs11564258	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q12	MUC19, LRRK2	rs11564258-A	0.025	6E-29		1.334	[1.217-1.461]	Affymetrix, Illumina [1230000] (imputed)	N
896	chr12	40792299	40792300	rs11564258	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	12q12	MUC19, LRRK2	rs11564258-A	0.025	6E-21		1.74	[1.55-1.95]	Affymetrix, Illumina [953241] (imputed)	N
896	chr12	40815623	40815624	rs145863953	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	12q12	NR	rs145863953-?	NR	4E-6		0.1638	[0.094-0.233] unit increase	Illumina [~ 7800000] (imputed)	N
896	chr12	40840324	40840325	rs10878597	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	12q12	MUC19	rs10878597-C	NR	5E-6		3.35	NR unit decrease	Illumina [up to 299604]	N
897	chr12	40922571	40922572	rs117073808	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	LRRK2	rs117073808-T	0.9809	2E-20		0.3955	[0.31-0.48] unit decrease	NR [7784415] (imputed)	N
897	chr12	40936638	40936639	rs141128804	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	CNTN1	rs141128804-T	0.0173	6E-14		0.3468	[0.26-0.44] unit increase	NR [7784415] (imputed)	N
897	chr12	41023479	41023480	rs138583130	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (> 2 drugs prescribed)	250 European ancestry cases, 3,202 European ancestry controls, 109 cases, 668 controls	NA	12q12	CNTN1	rs138583130-?		5E-7		2.5	[2.13-2.87]	NR [7120598] (imputed)	N
898	chr12	41032091	41032092	rs4594074	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	12q12	LRRK2, CNTN1	rs4594074-A	0.9	9E-8		0.4642	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
898	chr12	41047350	41047351	rs11177623	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN1	5,362 Icelandic ancestry individuals	NA	12q12		rs11177623-C	0.319	2E-12		0.141643	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
898	chr12	41047350	41047351	rs11177623	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q12	CNTN1	rs11177623-T	0.6721875	1E-11	(CNTN1, 2974_61_2)	0.17593947	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
898	chr12	41099691	41099692	rs11177934	31206164	Richards AL	2019-06-17	Schizophr Bull (Bp)	The Relationship Between Polygenic Risk Scores and Cognition in Schizophrenia.	Cognitive ability in schizophrenia	3,034 European ancestry individuals	NA	12q12	NR	rs11177934-?	NR	8E-6		0.2696	[0.15-0.39] unit decrease	Illumina [NR] (imputed)	N
898	chr12	41126329	41126330	rs17539289	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	12q12	CNTN1	rs17539289-A	0.0535	5E-6	(Primary)	0.6468	[0.37-0.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
898	chr12	41126731	41126732	rs74896189	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	12q12	NR	rs74896189-A	NR	4E-7		1.3738	[NR]	Illumina [4867007] (imputed)	N
899	chr12	41246279	41246280	rs312274	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	12q12	CNTN1	rs312274-A		4E-6		0.05	[0.03-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr12	41247741	41247742	rs312273	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	12q12	intergenic	rs312273-?	NR	9E-6	(NSM vs. Control)	1.566	[NR]	Affymetrix [703012]	N
900	chr12	41353748	41353749	rs13328933	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q12	NR	rs13328933-C	0.948348054342984	5E-6	(IGP29)	0.3116	[0.18-0.45] unit increase	Illumina [~ 2500000] (imputed)	N
900	chr12	41365639	41365640	rs1442190	24842889	Vacic V	2014-05-19	Hum Mol Genet	Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.	Parkinson's disease	1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls	306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls	12q12	LRRK2	rs1442190-?	0.0264	2E-27		3.72	[2.98-4.64]	Affymetrix, Illumina [1069161] (imputed)	N
901	chr12	41481522	41481523	rs139386226	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q12	NR	rs139386226-?	NR	8E-6		0.0076228	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
902	chr12	41624794	41624795	rs117626015	24986923	Chu M	2014-07-01	Hum Mol Genet	A genome-wide association study identifies susceptibility loci of silica-related pneumoconiosis in Han Chinese.	Pneumoconiosis in silica exposure	202 Han Chinese ancestry cases, 198 Han Chinese ancestry controls	490 Han Chinese ancestry cases, 541 Han Chinese ancestry controls	12q12	CNTN1, PDZRN4	rs117626015-C	0.040	5E-6		2.43	[1.66 - 3.56]	Illumina [710999] (imputed)	N
902	chr12	41626443	41626444	rs564865745	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	12q12		rs564865745-G	0.05	1E-6		4.23	[2.37-7.54]	Illumina [7989272] (imputed)	N
903	chr12	41700763	41700764	rs7296503	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	12q12	PDZRN4	rs7296503-?	NR	2E-9				Illumina [20594536] (imputed)	N
903	chr12	41713305	41713306	rs118079879	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q12	intergenic	rs118079879-A	0.013	1E-7		5.93	[2.82-12.48]	Illumina [1556551]	N
903	chr12	41721234	41721235	rs1880889	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	12q12	PDZRN4	rs1880889-?	NR	3E-8	(Alkaline phosphatase)			Illumina [up to 10879115] (imputed)	N
903	chr12	41721429	41721430	rs1880887	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q12	CNTN1, PDZRN4	rs1880887-?	0.03	1E-10	(Alkaline phosphatase)			Illumina [496032]	N
903	chr12	41728338	41728339	rs11180834	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q12		rs11180834-T	0.45	3E-9		5.94	z score increase	Affymetrix [9061022] (imputed)	N
903	chr12	41731748	41731749	rs1317540	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q12	NR	rs1317540-A	0.3986	4E-14				NR [9056863] (imputed)	N
903	chr12	41738644	41738645	rs10880045	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q12		rs10880045-T	0.36	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
903	chr12	41746672	41746673	rs1405552	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q12	NR	rs1405552-G	NR	1E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
903	chr12	41746672	41746673	rs1405552	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q12	CNTN1	rs1405552-A	0.457664427807816	1E-10		0.017518386	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
903	chr12	41777245	41777246	rs73126876	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	12q12	PDZRN4	rs73126876-C	NR	4E-9		1.16459	[0.78-1.55] unit increase	Illumina [NR] (imputed)	N
903	chr12	41778981	41778982	rs1902910	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	12q12	NR	rs1902910-G	NR	2E-6	(Hispanic)	3.88	[2.3-5.46] unit increase	Affymetrix [14000000] (imputed)	N
903	chr12	41801293	41801294	rs1379767	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	12q12		rs1379767-G	0.207	6E-6		0.045	[0.025-0.065] unit decrease	Illumina [6361597] (imputed)	N
903	chr12	41801962	41801963	rs7133365	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q12		rs7133365-A	0.42	5E-18		8.65	z score increase	Affymetrix [9061022] (imputed)	N
903	chr12	41801962	41801963	rs7133365	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q12	NR	rs7133365-A	0.4517	2E-10				NR [9056863] (imputed)	N
904	chr12	41838234	41838235	rs2733289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q12		rs2733289-C	NR	2E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
904	chr12	41838234	41838235	rs2733289	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q12	NR	rs2733289-C	0.4775	4E-11		0.0301	[0.021-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
904	chr12	41846271	41846272	rs1841025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q12		rs1841025-C	0.48	2E-9				NR [NR] (imputed)	N
904	chr12	41846271	41846272	rs1841025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q12		rs1841025-C	0.48	3E-13		0.011	% increase	NR [NR] (imputed)	N
904	chr12	41846271	41846272	rs1841025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q12	NR	rs1841025-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
904	chr12	41863392	41863393	rs2730827	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q12	NR	rs2730827-C	0.5145	2E-13		0.0279	[0.02-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
904	chr12	41866903	41866904	rs2730806	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q12	NR	rs2730806-T	0.4807	3E-11		0.016460001	[0.012-0.021] unit increase	Affymetrix [10549349] (imputed)	N
904	chr12	41874281	41874282	rs7957589	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	12q12	CNTN1	rs7957589-T	0.146	8E-10		0.047	[0.032-0.061] unit decrease	Illumina [7428049] (imputed)	N
904	chr12	41880908	41880909	rs2733287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q12		rs2733287-C	NR	1E-13		0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
904	chr12	41887939	41887940	rs1458156	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q12	PDZRN4	rs1458156-C	0.511511	1E-11		0.00928804	[0.0066-0.012] unit decrease	Affymetrix [12370749]	N
904	chr12	41887939	41887940	rs1458156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q12		rs1458156-?	NR	3E-15				NR [~ 8900000] (imputed)	N
904	chr12	41887939	41887940	rs1458156	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q12	NA	rs1458156-T	0.4963	2E-12		0.0125	[0.009-0.016] unit increase	NR [~ 27400000] (imputed)	N
904	chr12	41909243	41909244	rs10880089	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12q12		rs10880089-C	NR	2E-6		1.0449	unit increase	Illumina [NR] (imputed)	N
904	chr12	41921664	41921665	rs285575	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q12	PDZRN4	rs285575-A	0.489	7E-7		0.015	[0.009-0.0208] kg/m2 increase	Affymetrix, Illumina [2550021]	N
904	chr12	41921664	41921665	rs285575	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q12	PDZRN4	rs285575-A	0.481	7E-6	(EA, men)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
904	chr12	41921664	41921665	rs285575	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q12	PDZRN4	rs285575-A	0.481	6E-7	(EA)	0.015	[0.0093-0.0215] kg/m2 increase	Affymetrix, Illumina [2550021]	N
904	chr12	41940663	41940664	rs11180992	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12q12	PDZRN4	rs11180992-C	0.01	3E-6	(men)	0.334	[0.19-0.48] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
904	chr12	41940953	41940954	rs113133706	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	12q12	PDZRN4	rs113133706-?	NR	5E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
905	chr12	41948195	41948196	rs11181001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q12	NA	rs11181001-A	0.4806	1E-16		0.0136	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
905	chr12	41948195	41948196	rs11181001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q12	NA	rs11181001-A	0.4806	1E-16		0.0136	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
905	chr12	41948195	41948196	rs11181001	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q12	NA	rs11181001-A	0.4806	1E-16		0.0136	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
905	chr12	41948195	41948196	rs11181001	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q12	NR	rs11181001-A	NR	2E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
905	chr12	41948195	41948196	rs11181001	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q12	CNTN1	rs11181001-A	0.465261489530212	4E-10		0.017089682	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
905	chr12	41948844	41948845	rs285582	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12q12	PDZRN4	rs285582-C	0.17884	3E-11		0.0182454	[0.013-0.024] unit increase	NR [16516521] (imputed)	N
905	chr12	41959251	41959251	rs574509444	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q12	PDZRN4	rs574509444-T	0.6337	3E-6		0.0314	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
905	chr12	41965860	41965861	rs1458175	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	12q12	PDZRN4	rs1458175-?	0.49	2E-6		1.34	[NR]	Illumina [551642]	N
905	chr12	41979492	41979493	rs149995739	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	12q12		rs149995739-A	0.02548	3E-6		2.347	[1.638-3.362]	Affymetrix [7975321] (imputed)	N
905	chr12	41986967	41986968	rs287028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q12	NR	rs287028-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
905	chr12	42022185	42022186	rs286996	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	12q12	PDZRN4	rs286996-?	NR	9E-6	(S_HDL_TG)	0.06816907	NR unit increase	Illumina [609262]	N
905	chr12	42022185	42022186	rs286996	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	12q12	PDZRN4	rs286996-?	NR	3E-8	(S_HDL_TG)	0.09591435	NR unit increase	Illumina [609262]	N
906	chr12	42111006	42111007	rs10785282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q12	NR	rs10785282-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
906	chr12	42125586	42125587	rs4768005	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	1,792 European ancestry male individuals	NA	12q12	PDZRN4, GXYLT1	rs4768005-G	0.086	6E-7		0.386	[0.24-0.54] unit increase	Illumina [7251583] (imputed)	N
906	chr12	42144580	42144581	rs138627431	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	12q12		rs138627431-A	0.03003	6E-6		2.223	[1.574-3.14]	Affymetrix [7975321] (imputed)	N
906	chr12	42146430	42146431	rs116960278	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	12q12	NR	rs116960278-A		3E-6		0.8454	[0.49-1.2] unit decrease	Illumina [NR] (imputed)	N
906	chr12	42148612	42148613	rs144029582	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	12q12	RP11-630C16, 1	rs144029582-A		4E-7		0.3265	[0.2-0.45] unit increase	Illumina [NR]	N
906	chr12	42171981	42171982	rs871392	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	12q12	intergenic	rs871392-A	0.15	3E-6	(HDL cholesterol)	0.26	[0.15-0.37] mmol/L decrease	Illumina [316730]	N
907	chr12	42267493	42267494	rs752520449	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	12q12	LINC02400, GXYLT1	rs752520449-?	NR	5E-8				NR [~ 24000000] (imputed)	N
907	chr12	42295778	42295779	rs138017112	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	GXYLT1	rs138017112-C	0.0142	7E-12		0.413	[0.29-0.53] unit increase	NR [7784415] (imputed)	N
908	chr12	42349040	42349041	rs10880213	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q12	GXYLT1	rs10880213-A	0.5183	2E-8		0.0042	[0.0028-0.0056] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
908	chr12	42354628	42354629	rs1234032	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	12q12		rs1234032-C	0.252	2E-8		0.141429	[0.092-0.19] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
908	chr12	42451121	42451122	rs1907705	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GXYLT1	5,364 Icelandic ancestry individuals	NA	12q12		rs1907705-T	0.4576	8E-42		0.253943	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
909	chr12	42475887	42475888	rs3229	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q12	NR	rs3229-G	0.5904	1E-6		0.0257	[0.015-0.036] unit decrease	Illumina [up to 1980188] (imputed)	N
909	chr12	42482977	42482978	rs7964383	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q12	NR	rs7964383-G	0.559	2E-35	(Glucoside xylosyltransferase 1, GXYLT1.8229.1.3)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
909	chr12	42503466	42503467	rs7312933	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q12	NR	rs7312933-T	0.5901	1E-6		0.0254	[0.015-0.036] unit decrease	Illumina [up to 1980188] (imputed)	N
909	chr12	42527040	42527041	rs139695917	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GXYLT1	5,364 Icelandic ancestry individuals	NA	12q12		rs139695917-C	0.01512	2E-76		1.3644	[1.22-1.51] unit increase	Illumina [7506463] (imputed)	N
909	chr12	42527040	42527041	rs139695917	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q12	GXYLT1	rs139695917-T	0.9853125	3E-42	(GXYLT1, 8229_1_3)	1.361104	[1.17-1.55] unit decrease	Illumina [> 1000000] (imputed)	N
909	chr12	42527040	42527041	rs139695917	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q12	GXYLT1	rs139695917-C	0.012	3E-40	(Glucoside xylosyltransferase 1, GXYLT1.8229.1.3)	1.56	[1.32-1.8] unit increase	Affymetrix [10572788] (imputed)	N
909	chr12	42535402	42535403	rs144755950	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q12	GXYLT1	rs144755950-T	0.9856	2E-10		0.3993	[0.28-0.52] unit decrease	NR [7784415] (imputed)	N
909	chr12	42540279	42540280	rs7965392	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12q12	PPHLN1	rs7965392-G	0.613	4E-10		0.1118	[0.077-0.147] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
910	chr12	42705737	42705738	rs116293915	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q12	PPHLN1	rs116293915-C	0.555071	2E-8		0.00799953	[0.0052-0.0108] unit decrease	Affymetrix [12370749]	N
910	chr12	42722907	42722908	rs116975820	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q12	NR	rs116975820-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
911	chr12	42743597	42743598	rs4359266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q12		rs4359266-T	NR	1E-13		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
911	chr12	42796299	42796300	rs12826942	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q12	PPHLN1	rs12826942-A	0.7567	2E-6		0.0347	[0.02-0.049] unit decrease	NR [8041861] (imputed)	N
911	chr12	42854204	42854205	rs3747562	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q12	PRICKLE1	rs3747562-G	NR	9E-6		1.0571942	NR	Affymetrix, Illumina [8278136] (imputed)	N
912	chr12	42865873	42865874	rs1551210	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q12	PRICKLE1	rs1551210-T	0.402	2E-17		0.0059	[0.0045-0.0073] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
912	chr12	42869139	42869140	rs4768412	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	12q12	PRICKLE1	rs4768412-T	0.363	3E-7		1.19	[1.11-1.27]	Illumina [103875]	N
912	chr12	42869139	42869140	rs4768412	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	12q12	PRICKLE1	rs4768412-T	0.363	4E-6		1.16	[1.09-1.23]	Illumina [103875]	N
912	chr12	42870443	42870444	rs6582398	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q12	PRICKLE1	rs6582398-T	0.6002	1E-12		0.014	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
912	chr12	42966142	42966143	rs568483736	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q12	PRICKLE1	rs568483736-T	0.0027	6E-6		0.6554	[0.37-0.94] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
912	chr12	42973242	42973243	rs57566659	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q12	PRICKLE1	rs57566659-?		7E-7				Illumina [4322238] (imputed)	N
913	chr12	43018521	43018522	rs117347473	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	12q12	NR	rs117347473-A	NR	2E-6		1.2641	[1.17-1.36]	Illumina [11600722] (imputed)	N
913	chr12	43046448	43046449	rs11181613	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q12	NR	rs11181613-C	0.8547	1E-10		0.043	[0.03-0.056] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
913	chr12	43046448	43046449	rs11181613	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q12	NR	rs11181613-C	0.8686	2E-12		0.0418	[0.03-0.054] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
913	chr12	43049381	43049382	rs148294058	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	12q12	PRICKLE1, ADAMTS20	rs148294058-?	NR	5E-9		1.5698587	[1.36-1.81]	Illumina [12438219] (imputed)	N
913	chr12	43050021	43050022	rs145505949	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	12q12	PRICKLE1	rs145505949-T	0.12154299999999996	3E-7		1.38	[1.22-1.57]	Affymetrix, Illumina [~ 11700000] (imputed)	N
913	chr12	43052032	43052033	rs190713732	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (non-planning)	21,786 European ancestry individuals	NA	12q12	PRICKLE1, ADAMTS20	rs190713732-G	0.9988	4E-7		0.946	[0.579-1.312] unit increase	Illumina [11434023] (imputed)	N
913	chr12	43059814	43059815	rs10880342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q12		rs10880342-T	NR	7E-10		0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
913	chr12	43068643	43068644	rs7309687	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	12q12	NR	rs7309687-?	NR	9E-7				Illumina [at least 7383741] (imputed)	N
913	chr12	43102242	43102243	rs10880351	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q12	RP11-25I15.3	rs10880351-A	0.2249	9E-6		0.0301	[0.017-0.043] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
914	chr12	43130623	43130624	rs2730985	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q12		rs2730985-?	0.63	1E-9	(East Asian)	1.0869565	[1.05-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
914	chr12	43130623	43130624	rs2730985	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	12q12	PRICKLE1	rs2730985-G	0.629	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 10700000] (imputed)	N
914	chr12	43134190	43134191	rs11610543	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q12	PRICKLE1	rs11610543-G	NR	2E-9	(East Asian)	1.08	[1.06-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
914	chr12	43134190	43134191	rs11610543	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q12	NR	rs11610543-G	0.5139	1E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
914	chr12	43152631	43152632	rs11829548	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	12q12	PRICKLE1	rs11829548-T	NR	9E-6	(wake after sleep onset)	0.08456	[0.047-0.122] unit decrease	Affymetrix [7141204] (imputed)	N
914	chr12	43160743	43160744	rs12316797	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q12	PRICKLE1	rs12316797-G	0.13	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
914	chr12	43160824	43160825	rs2731006	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q12	intergenic	rs2731006-?	0.29	4E-6				Affymetrix [253903]	N
914	chr12	43232383	43232384	rs4768451	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q12	NR	rs4768451-?	NR	4E-8				Illumina [7760689] (imputed)	N
914	chr12	43253414	43253415	rs1520832	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q12	PRICKLE1	rs1520832-?	0.04	1E-6	(EA)	1.39	[0.99-1.95]	Affymetrix, Illumina [2478304] (imputed)	N
915	chr12	43295310	43295311	rs17092358	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	12q12	NR	rs17092358-?		6E-6				NR [327872]	N
915	chr12	43309325	43309326	rs1402359	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	12q12	intergenic	rs1402359-A	0.22	8E-6	(female)	0.0711	[0.04-0.102] unit increase	Illumina [6380737] (imputed)	N
915	chr12	43353412	43353413	rs113233319	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	12q12	NR	rs113233319-G	0.01605	5E-6		0.5432	[0.31-0.78] unit decrease	Illumina [10677593] (imputed)	N
916	chr12	43411929	43411930	rs117522667	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs117522667-T	0.01394	2E-8	(SNRPD3)	0.04627	NR unit increase	Illumina [1671387] (imputed)	N
916	chr12	43434281	43434282	rs1167125	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q12	ADAMTS20	rs1167125-C	0.042	5E-6	(Diet fat )	0.03	[NR] g/d increase	Illumina [899892]	N
916	chr12	43460458	43460459	rs80241532	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q12	NR	rs80241532-A	NR	7E-6		0.3224	[0.18-0.46] unit increase	Illumina [11133794] (imputed)	N
916	chr12	43484486	43484487	rs1167132	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q12	NR	rs1167132-T	0.3917	9E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
916	chr12	43511014	43511015	rs1828859	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q12	NR	rs1828859-?	NR	3E-6				Affymetrix [NR]	N
917	chr12	43565921	43565922	rs12315611	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs12315611-T	0.02091	2E-8	(RAB14)	0.01589	NR unit increase	Illumina [1671387] (imputed)	N
917	chr12	43570514	43570515	rs7978895	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	12q12	ADAMTS20	rs7978895-?	NR	9E-6		0.14	[0.081-0.199] unit increase	Illumina [1075436] (imputed)	N
917	chr12	43574199	43574200	rs11181913	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q12	GXYLT1, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20	rs11181913-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
917	chr12	43574199	43574200	rs11181913	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	12q12		rs11181913-A	0.91	1E-22		0.016	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
917	chr12	43574199	43574200	rs11181913	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	12q12		rs11181913-A	0.9	2E-6		0.02	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
917	chr12	43577712	43577713	rs7305366	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	12q12	ADAMTS20	rs7305366-T	NR	9E-6		0.081	[0.046-0.116] unit decrease	Illumina [6319684] (imputed)	N
917	chr12	43582392	43582393	rs1514665	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q12	PUS7L	rs1514665-?	NR	1E-6	(phosphocreatine)	0.20823045	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
917	chr12	43588852	43588853	rs7299482	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q12	NR	rs7299482-A	0.269	2E-12				NR [9056863] (imputed)	N
917	chr12	43593651	43593652	rs10880435	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q12	NR	rs10880435-A	0.2657	1E-17				NR [9056863] (imputed)	N
917	chr12	43606405	43606406	rs6582442	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q12		rs6582442-C	0.29	3E-59		16.23	z score increase	Affymetrix [9061022] (imputed)	N
917	chr12	43608450	43608451	rs7137364	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q12		rs7137364-T	0.27	2E-12		7.04	z score increase	Affymetrix [9061022] (imputed)	N
917	chr12	43609256	43609257	rs11181939	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q12	NR	rs11181939-?		1E-12				NR [7428630] (imputed)	N
917	chr12	43610026	43610027	rs2407283	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q12		rs2407283-?	NR	1E-16				NR [9705931] (imputed)	N
917	chr12	43614544	43614545	rs10880440	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q12		rs10880440-A	0.27	1E-18		8.82	z score increase	Affymetrix [9061022] (imputed)	N
917	chr12	43621948	43621949	rs9669376	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q12	NR	rs9669376-?		6E-10				NR [7428630] (imputed)	N
918	chr12	43700340	43700341	rs7977237	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	12q12	LOC105369739, ADAMTS20	rs7977237-?	NR	3E-8		0.08	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
919	chr12	43847011	43847012	rs184610077	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q12	NR	rs184610077-T	NR	9E-7		0.3366	[0.2-0.47] unit increase	Illumina [11133794] (imputed)	N
920	chr12	43918879	43918879	rs769560893	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs769560893-TC	0.669897	1E-9		0.0583655	[0.039-0.078] decrease	Affymetrix [11014269] (imputed)	N
920	chr12	43929995	43929996	rs275380	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	12q12	ADAMTS20	rs275380-?	NR	1E-6	(LTG)			Illumina [NR]	N
920	chr12	43967676	43967677	rs7295246	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	12q12	ADAMTS20	rs7295246-G	0.413	4E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [11480632] (imputed)	N
920	chr12	43967676	43967677	rs7295246	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	12q12	ADAMTS20	rs7295246-G	0.406	3E-7		1.07	[1.04-1.10]	Illumina [7055881] (imputed)	N
920	chr12	43968772	43968773	rs12369123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q12		rs12369123-?	NR	3E-8				NR [~ 8900000] (imputed)	N
920	chr12	43984227	43984228	rs77464658	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q12	NR	rs77464658-?	NR	5E-6	(Native Hawaiian)	0.9525	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
920	chr12	43986075	43986076	rs12422456	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	13,625 European ancestry individuals, 1,465 African American individuals	NA	12q12	NR	rs12422456-?	NR	1E-7		0.3082	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
920	chr12	44039901	44039902	rs575708692	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	12q12	RP11-73B8.3	rs575708692-A	0.0044	2E-6		0.6331	[0.37-0.89] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
920	chr12	44039901	44039902	rs575708692	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	12q12	RP11-73B8.3	rs575708692-A	0.0042	5E-6		0.6069	[0.35-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
921	chr12	44153825	44153826	rs4251424	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	12q12	PUS7L, IRAK4	rs4251424-A		2E-8	(AA)			Illumina [NR]	N
922	chr12	44205017	44205018	rs1816854	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	12q12	PUS7L, IRAK4, TWF1, TMEM117, NELL2	rs1816854-T	0.94	6E-6		1.38	[NR]	Illumina [522285]	N
924	chr12	44460904	44460904	rs200603758	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	12q12	NR	rs200603758-TA		9E-6		0.1311	[0.073-0.189] SD units decrease	NR [10700000] (imputed)	N
926	chr12	44793024	44793025	rs61934161	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	12q12	TMEM117	rs61934161-G	0.987	9E-6	(Mean vigilance)	0.6421	[0.36-0.92] unit increase	Affymetrix [8042262] (imputed)	N
928	chr12	44979368	44979369	rs75271259	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	12q12		rs75271259-A	NR	3E-6		0.27690643	[0.16-0.39] decrease	Illumina [6334277] (imputed)	N
929	chr12	45133065	45133066	rs773519927	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q12	NELL2	rs773519927-A	0.0015	9E-6		0.6346	[0.35-0.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr12	45133065	45133066	rs773519927	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q12	NELL2	rs773519927-A	0.0015	9E-6		0.6346	[0.35-0.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
929	chr12	45152545	45152546	rs10748401	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q12	NR	rs10748401-?	NR	4E-8				Affymetrix [NR]	N
930	chr12	45238903	45238904	rs2055677	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	12q12	NR	rs2055677-?	NR	6E-6	(order_Rhizobiales)	0.552511	[0.28-0.82] unit decrease	Affymetrix [210924]	N
930	chr12	45290465	45290466	rs12367572	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	12q12	NR	rs12367572-?	NR	1E-6	(genus_Phascolarctobacterium)	0.647326	[0.4-0.89] unit decrease	Affymetrix [210924]	N
931	chr12	45361953	45361953	rs200197234	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	12q12	NR	rs200197234-TG	0.053938	6E-7		0.1923082	[0.12-0.27] unit increase	Illumina [9469131] (imputed)	N
931	chr12	45407224	45407225	rs118121120	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12q12		rs118121120-?	NR	3E-6		0.5562085	[0.32-0.79] unit increase	Illumina [9906551] (imputed)	N
931	chr12	45407224	45407225	rs118121120	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12q12		rs118121120-?	NR	2E-6		0.5910329	[0.35-0.83] unit increase	Illumina [9901720] (imputed)	N
932	chr12	45537744	45537745	rs12230258	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q12	NR	rs12230258-?		9E-6	(African)			Illumina [~ 5140000] (imputed)	N
932	chr12	45537744	45537745	rs12230258	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q12	NR	rs12230258-?		8E-6	(African)			Illumina [~ 5140000] (imputed)	N
932	chr12	45541318	45541319	rs117195585	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	12q12		rs117195585-G	NR	1E-7		4.83	[2.68-8.69]	Affymetrix [NR] (imputed)	N
933	chr12	45635027	45635028	rs561285620	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q12	ANO6	rs561285620-A	0.0015	6E-6		0.9341	[0.53-1.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
933	chr12	45726614	45726615	rs10785571	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q12	NR	rs10785571-T	0.8757	7E-6		0.0901	[0.051-0.129] unit decrease	Illumina [up to 1980188] (imputed)	N
934	chr12	45774907	45774908	rs17095830	22138694	Lin Z	2011-12-04	Nat Genet	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls	2,100 Han Chinese ancestry cases, 3,496 Han Chinese ancestry controls	12q12	ANO6	rs17095830-G	0.10	2E-8		1.29	[1.18-1.41]	Illumina [1356350] (imputed)	N
934	chr12	45833754	45833755	rs74081827	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	12q12	ANO6	rs74081827-A	NR	7E-7	(EA)	1.66		Illumina [at least 360704] (imputed)	N
934	chr12	45843489	45843490	rs10880784	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	12q12	ANO6	rs10880784-G	0.93	2E-6	(women)	0.257	[0.15-0.36] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
934	chr12	45868622	45868623	rs2408252	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q12	NR	rs2408252-C	0.5375	1E-9		0.0264	[0.018-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
935	chr12	45959762	45959763	rs76569837	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	12q12	intergenic	rs76569837-G	NR	3E-6		2.7	[NR]	Illumina [up to 9792010] (imputed)	N
935	chr12	45968597	45968598	rs7310959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs7310959-A	NR	7E-10		0.028494	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
935	chr12	45968597	45968598	rs7310959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs7310959-A	NR	7E-10		0.0284896	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
935	chr12	45968704	45968705	rs75279353	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q12	NR	rs75279353-A	0.0209	3E-7		0.05306945	[0.033-0.073] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
935	chr12	45971204	45971205	rs7312766	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q12	NR	rs7312766-?	NR	1E-22				Affymetrix [NR]	N
935	chr12	45985271	45985272	rs73108788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs73108788-T	NR	7E-16		0.0295003	[0.022-0.037] unit increase	Affymetrix [319769] (imputed)	N
935	chr12	45985271	45985272	rs73108788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs73108788-T	NR	3E-16		0.0298054	[0.023-0.037] unit increase	Affymetrix [319769] (imputed)	N
935	chr12	45985271	45985272	rs73108788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs73108788-T	NR	1E-8		0.0216034	[0.014-0.029] unit decrease	Affymetrix [321788] (imputed)	N
935	chr12	45985271	45985272	rs73108788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs73108788-T	NR	2E-8		0.020891	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
935	chr12	45985271	45985272	rs73108788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q12		rs73108788-?	NR	2E-9				NR [~ 8900000] (imputed)	N
935	chr12	45986470	45986471	rs2193748	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q12	NR	rs2193748-C	0.2278	6E-6		0.0106	[0.0061-0.0151] unit increase	NR [~ 27400000] (imputed)	N
935	chr12	45986737	45986738	rs10880823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q12	NR	rs10880823-T	0.7662	6E-10		0.0132	[0.0091-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
935	chr12	45987251	45987252	rs142020336	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q12	NR	rs142020336-A	0.01742	3E-8	(UGDH)	1.2	NR unit increase	Illumina [1671387] (imputed)	N
935	chr12	45988558	45988559	rs12423939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q12	RP11-352M15.1	rs12423939-G	NR	5E-8		0.0382963	[0.025-0.052] unit decrease	Affymetrix [319769] (imputed)	N
935	chr12	45989928	45989929	rs4768642	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q12	NR	rs4768642-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
936	chr12	46029208	46029209	rs719700	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	12q12	ANO6/ARID2	rs719700-T	0.96	3E-8		5.555	(z-score) increase	Affymetrix, Illumina [at least 398246] (imputed)	N
936	chr12	46051191	46051192	rs1109517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q12	NR	rs1109517-T	NR	4E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr12	46067217	46067218	rs10880833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q12		rs10880833-T	0.260461	2E-14		0.019597942	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr12	46067217	46067218	rs10880833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q12		rs10880833-T	0.260455	5E-11		0.01683746	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr12	46079171	46079172	rs67790232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q12		rs67790232-A	0.794	7E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
936	chr12	46079171	46079172	rs67790232	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q12	Intergenic	rs67790232-A	0.794	4E-9	(MTAG)	0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
936	chr12	46085329	46085330	rs7299538	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	12q12	NR	rs7299538-?		4E-6	(genus_Fusobacterium)	0.6794669	[0.41-0.95] unit decrease	Affymetrix [211319]	N
936	chr12	46105782	46105783	rs4285945	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q12		rs4285945-A	0.771	5E-11		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
936	chr12	46134811	46134812	rs2193749	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q12	NR	rs2193749-T	0.4947	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
936	chr12	46134811	46134812	rs2193749	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q12	NR	rs2193749-C	0.513	1E-7		0.00692773	[0.0043-0.0095] unit increase	NR [~ 9732723] (imputed)	N
937	chr12	46144854	46144855	rs10880855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q12		rs10880855-T	NR	1E-9		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
937	chr12	46144854	46144855	rs10880855	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q12	ARID2	rs10880855-T	0.5068	7E-15		7.778	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
937	chr12	46144854	46144855	rs10880855	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	12q12	ARID2-SNAT1	rs10880855-T	0.51	8E-7	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
937	chr12	46144854	46144855	rs10880855	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	12q12	ARID2-SNAT1	rs10880855-T	0.51	4E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
937	chr12	46155144	46155145	rs1468993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q12	NR	rs1468993-C	0.515455	2E-24				Affymetrix, Illumina [24332387] (imputed)	N
937	chr12	46155144	46155145	rs1468993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q12	NR	rs1468993-C	0.506974	4E-25		0.019299	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
937	chr12	46155144	46155145	rs1468993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q12	NR	rs1468993-C	0.515573	4E-13				Affymetrix, Illumina [24653286] (imputed)	N
937	chr12	46155144	46155145	rs1468993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q12	NR	rs1468993-C	0.51657	2E-20				Affymetrix, Illumina [24558453] (imputed)	N
937	chr12	46155144	46155145	rs1468993	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q12	ARID2, SCAF11, SLC38A1	rs1468993-?		2E-29				Affymetrix, Illumina [NR] (imputed)	N
937	chr12	46170981	46170982	rs11183201	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q12		rs11183201-T	0.4925	2E-14		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
937	chr12	46170981	46170982	rs11183201	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ARID2	rs11183201-C	0.51	8E-17		1.0287007		Affymetrix [11880941] (imputed)	N
937	chr12	46170981	46170982	rs11183201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q12		rs11183201-?	NR	2E-8				NR [~ 8900000] (imputed)	N
937	chr12	46189283	46189284	rs34072608	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q12	NR	rs34072608-G	0.800907	2E-13		0.00710681	[0.0051-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
937	chr12	46189283	46189284	rs34072608	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q12	NR	rs34072608-G	0.800907	8E-12		0.00732241	[0.005-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
937	chr12	46195848	46195849	rs10880859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q12		rs10880859-G	NR	3E-11		0.0136	[0.0097-0.0175] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
937	chr12	46195848	46195849	rs10880859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q12		rs10880859-G	NR	2E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
937	chr12	46199588	46199589	rs1863127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q12	ARID2	rs1863127-C	0.508495	5E-18		0.019124802	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
937	chr12	46199588	46199589	rs1863127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q12	ARID2	rs1863127-C	0.508463	4E-12		0.0153609	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
937	chr12	46199588	46199589	rs1863127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q12	ARID2	rs1863127-C	0.5085	1E-14		0.017031008	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
937	chr12	46199588	46199589	rs1863127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q12		rs1863127-?	NR	4E-17				NR [~ 8900000] (imputed)	N
937	chr12	46199797	46199798	rs78341918	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	12q12		rs78341918-T	0.96	9E-7		0.077	[0.046-0.108] unit increase	Affymetrix [NR]	N
937	chr12	46200395	46200396	rs7316454	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q12	ARID2	rs7316454-T	0.1789	6E-11		0.019	[0.013-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
937	chr12	46202098	46202099	rs2408436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q12	ARID2	rs2408436-G	0.209211	3E-9		0.016210869	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr12	46209519	46209520	rs76611452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q12	ARID2	rs76611452-T	0.04	2E-10		1.19	[0.82-1.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
937	chr12	46209519	46209520	rs76611452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q12	ARID2	rs76611452-T	0.0413	2E-9		1.1431	[0.77-1.51] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
937	chr12	46215894	46215895	rs35763453	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q12	ARID2	rs35763453-T	0.941353	9E-11		0.0282519	[0.02-0.037] unit decrease	Affymetrix [NR] (imputed)	N
937	chr12	46223575	46223575	rs141510569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q12	NR	rs141510569-I	0.507604	1E-13		0.015416	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
937	chr12	46223773	46223774	rs7976870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q12	NR	rs7976870-T	0.506088	7E-21		0.017357	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
937	chr12	46224062	46224063	rs7298844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q12		rs7298844-G	NR	1E-8		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
938	chr12	46294907	46294908	rs247929	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q12	ARID2	rs247929-C	0.5081	5E-17		1.0291		Affymetrix [11880941] (imputed)	N
938	chr12	46294907	46294908	rs247929	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q12	ARID2	rs247929-C	0.5081	5E-17		1.0314856		Affymetrix [11880941] (imputed)	N
938	chr12	46294907	46294908	rs247929	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	12q12	intergenic	rs247929-C	0.513	8E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr12	46298434	46298435	rs1650007	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q12	ARID2	rs1650007-T	NR	2E-8		0.017317137	[0.011-0.023] unit increase	Affymetrix [NR]	N
938	chr12	46298436	46298437	rs1650008	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q12	NR	rs1650008-?	NR	6E-6		4.51	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
938	chr12	46321513	46321514	rs7315731	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q12	SCAF11	rs7315731-T		2E-11		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
938	chr12	46322448	46322449	rs10880868	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q12	NR	rs10880868-C	0.788982	4E-8		0.00803637	[0.0051-0.011] unit increase	Affymetrix [16585854] (imputed)	N
938	chr12	46322448	46322449	rs10880868	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q12	NR	rs10880868-C	0.788982	1E-6		0.00849881	[0.0051-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
938	chr12	46340820	46340821	rs1291621	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q12	SCAF11	rs1291621-A	0.022	2E-7		0.128	[0.081-0.175] unit increase	Affymetrix [7947838] (imputed)	N
938	chr12	46385847	46385848	rs12828693	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q12	NR	rs12828693-C	0.790623	2E-8		0.0145466	[0.0095-0.0196] unit decrease	NR [NR]	N
938	chr12	46390048	46390049	rs4768672	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	12q12	NR	rs4768672-T	0.3113	2E-10		0.0478	[0.033-0.063] unit decrease	Illumina [~ 10600000] (imputed)	N
938	chr12	46394126	46394127	rs7311198	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.11		rs7311198-T	0.5	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
939	chr12	46403321	46403322	rs1896539	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12q13.11	NR	rs1896539-C		4E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
939	chr12	46405049	46405050	rs7970129	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q13.11	SCAF11, SLC38A1	rs7970129-C	0.508	1E-15		1.0274324		Affymetrix [11880941] (imputed)	N
939	chr12	46412496	46412497	rs12826749	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q13.11	ARID2, SCAF11	rs12826749-?	NR	7E-9		0.0143141	[0.0095-0.0192] unit increase	Affymetrix [25921788] (imputed)	N
939	chr12	46416741	46416742	rs6582586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs6582586-?	NR	5E-10				NR [~ 8900000] (imputed)	N
939	chr12	46419085	46419086	rs7134559	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q13.11	SCAF11	rs7134559-T	0.404	4E-8		0.0539	[0.035-0.073] unit decrease	NR [7784415] (imputed)	N
939	chr12	46419085	46419086	rs7134559	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q13.11	SCAF11	rs7134559-C	NR	6E-7		1.0596	NR	Affymetrix, Illumina [8278136] (imputed)	N
939	chr12	46421748	46421749	rs11183289	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q13.11	Intergenic	rs11183289-T	0.792	2E-6	(AA)	0.142	NR unit increase	Illumina [NR] (imputed)	N
939	chr12	46426736	46426737	rs11183296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q13.11	Intergenic	rs11183296-T	0.792	5E-6	(AA)	0.141	NR unit increase	Illumina [NR] (imputed)	N
939	chr12	46430652	46430653	rs12370990	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q13.11	Intergenic	rs12370990-G	0.764	3E-6	(AA)	0.128	NR unit increase	Illumina [NR] (imputed)	N
939	chr12	46432589	46432590	rs11183298	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q13.11	Intergenic	rs11183298-C	0.771	2E-6	(AA)	0.132	NR unit increase	Illumina [NR] (imputed)	N
939	chr12	46444608	46444609	rs11536240	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.11	NR	rs11536240-?	NR	6E-6		4.528	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
939	chr12	46454806	46454807	rs2467011	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	12q13.11	NR	rs2467011-?		4E-6		1.49	[NR]	Illumina [NR] (imputed)	N
939	chr12	46473338	46473339	rs185077954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	12q13.11		rs185077954-C	0.005448	5E-8		0.180763	[0.12-0.25] unit increase	Illumina [13469940] (imputed)	N
939	chr12	46473338	46473339	rs185077954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q13.11		rs185077954-C	NR	5E-8		0.1808	[0.12-0.25] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
939	chr12	46485837	46485838	rs1373549	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	12q13.11	ARID2, SFRS2IP	rs1373549-?	NR	8E-6				Illumina [516645]	N
940	chr12	46573787	46573788	rs12581511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q13.11	NR	rs12581511-G	0.173045	2E-11		0.017643	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
940	chr12	46573787	46573788	rs12581511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.11		rs12581511-?	NR	1E-8				NR [~ 8900000] (imputed)	N
940	chr12	46576476	46576477	rs35486311	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q13.11	NR	rs35486311-A	0.02787	3E-8	(HGD)	0.687	NR unit increase	Illumina [1671387] (imputed)	N
940	chr12	46600162	46600163	rs557868370	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q13.11	SLC38A1	rs557868370-T	0.032	1E-6		1.63	[1.34-1.99]	Illumina [7206774] (imputed)	N
940	chr12	46604556	46604557	rs12828089	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	SLC38A1	rs12828089-A	0.15	4E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
940	chr12	46613393	46613394	rs6582623	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q13.11	SLC38A1	rs6582623-C	0.861653	5E-6		0.020638	[0.012-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
940	chr12	46613393	46613394	rs6582623	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q13.11	SLC38A1	rs6582623-C	0.869095	1E-9		0.023591	[0.016-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
940	chr12	46618698	46618699	rs75515611	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	12q13.11	NR	rs75515611-?	0.03459	6E-6		0.295058	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
940	chr12	46655742	46655743	rs74082087	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	SLC38A1	rs74082087-A	0.9125	2E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
941	chr12	46673432	46673433	rs2045556	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.11		rs2045556-A	0.28	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
941	chr12	46682008	46682009	rs61864810	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q13.11	Intergenic	rs61864810-G	NR	2E-6		0.0175732	[0.01-0.025] unit decrease	Illumina [13520550] (imputed)	N
941	chr12	46713719	46713720	rs11183438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q13.11		rs11183438-T	NR	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
941	chr12	46723495	46723496	rs34977907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q13.11		rs34977907-C	0.588591	7E-11		0.014893712	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
941	chr12	46730599	46730600	rs2408508	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.11	NR	rs2408508-?	NR	8E-11	(female)	0.16	[0.11-0.21] unit increase	Affymetrix [7794483] (imputed)	N
941	chr12	46730599	46730600	rs2408508	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.11	NR	rs2408508-?	NR	7E-8	(male)	0.19195	[0.12-0.26] unit increase	Affymetrix [7794483] (imputed)	N
941	chr12	46730599	46730600	rs2408508	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.11	NR	rs2408508-?	NR	1E-15		0.18019	[0.14-0.22] unit increase	Affymetrix [7794483] (imputed)	N
941	chr12	46749087	46749088	rs4768698	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q13.11	SLC38A2	rs4768698-A	0.3929	2E-9		1.048	NR	Affymetrix [9154080] (imputed)	N
941	chr12	46759135	46759136	rs7968283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q13.11		rs7968283-?	NR	2E-11				NR [~ 8900000] (imputed)	N
941	chr12	46761828	46761829	rs10880960	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.11	NR	rs10880960-G	0.609487	1E-17		0.0589256	[0.045-0.073] unit increase	Affymetrix [17914406] (imputed)	N
941	chr12	46764253	46764254	rs74385174	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	SLC38A2	rs74385174-A	0.9808	2E-25		0.0709	[0.058-0.084] unit increase	Affymetrix [18391927] (imputed)	N
941	chr12	46769155	46769156	rs139681378	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	12q13.11	NR	rs139681378-T	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
941	chr12	46769155	46769156	rs139681378	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip)	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	12q13.11	NR	rs139681378-T	NR	2E-8		0.71	[0.46-0.96] unit increase	Affymetrix, Illumina [NR] (imputed)	N
941	chr12	46774770	46774771	rs7979418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.11	RP11-96H19.1	rs7979418-G	0.606639	2E-11		0.015246965	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
941	chr12	46783652	46783653	rs12099669	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	AC008014.1	rs12099669-A	0.6962	1E-58		0.0331	[0.029-0.037] unit increase	Affymetrix [18391927] (imputed)	N
941	chr12	46791287	46791288	rs10748447	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.11	NR	rs10748447-T	0.3031	5E-9				NR [9056863] (imputed)	N
941	chr12	46791533	46791534	rs7312259	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.11		rs7312259-T	0.28	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
942	chr12	46796521	46796522	rs2131371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	12q13.11		rs2131371-C	NR	1E-13		0.075	[0.055-0.095] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
942	chr12	46796521	46796522	rs2131371	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	12q13.11	SLC38A2	rs2131371-A	0.28	2E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [8662096] (imputed)	N
942	chr12	46796521	46796522	rs2131371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs2131371-?	NR	4E-37				NR [~ 8900000] (imputed)	N
942	chr12	46801781	46801782	rs10880966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs10880966-G	0.615706	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
942	chr12	46810757	46810758	rs148885520	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q13.11	SLC38A2	rs148885520-CT	0.308619	8E-11	(-30 ms)	0.0389453	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
942	chr12	46810757	46810758	rs148885520	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q13.11	SLC38A2	rs148885520-CT	0.308619	1E-10	(-28 ms)	0.0378634	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
942	chr12	46828917	46828918	rs7487075	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q13.11	Intergenic	rs7487075-G	NR	1E-6		0.0180075	[0.011-0.025] unit decrease	Illumina [13520550] (imputed)	N
942	chr12	46861993	46861993	rs11374977	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.11	NR	rs11374977-GT	0.690441	2E-8		0.0399602	[0.026-0.054] unit increase	Affymetrix [17914406] (imputed)	N
943	chr12	46979190	46979191	rs28768973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q13.11		rs28768973-T	NR	4E-11		0.0177	[0.012-0.023] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
943	chr12	46979190	46979191	rs28768973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.11		rs28768973-?	NR	1E-9				NR [~ 8900000] (imputed)	N
943	chr12	46990286	46990287	rs4768737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	12q13.11		rs4768737-T	NR	4E-8		0.0608	[0.039-0.083] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
943	chr12	47034871	47034876	rs150122809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q13.11		rs150122809-C	NR	7E-18		0.0256	[0.02-0.031] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
943	chr12	47034871	47034876	rs150122809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q13.11		rs150122809-C	NR	3E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
943	chr12	47036669	47036670	rs111621504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	12q13.11		rs111621504-G	0.226468	5E-8		0.0221639	[0.014-0.03] unit decrease	Illumina [13478866] (imputed)	N
944	chr12	47082097	47082098	rs117498071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs117498071-?	NR	3E-9				NR [~ 8900000] (imputed)	N
944	chr12	47092661	47092662	rs12312144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12q13.11		rs12312144-C	0.819201	4E-21		0.0477506	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
944	chr12	47092661	47092662	rs12312144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q13.11		rs12312144-C	0.819174	2E-29		0.0599971	[0.05-0.07] unit decrease	NR [11722792] (imputed)	N
944	chr12	47109386	47109387	rs12297321	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	12q13.11	SLC38A4, LOC100288798	rs12297321-T	0.152	7E-13		0.048	[0.032-0.064] unit increase	Affymetrix, Illumina [NR] (imputed)	N
944	chr12	47144032	47144033	rs985552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.11	NR	rs985552-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
944	chr12	47148049	47148050	rs12582034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs12582034-A	0.0764401	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
944	chr12	47148049	47148050	rs12582034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.11	NR	rs12582034-A	0.070889	3E-19		0.031894	[0.025-0.039] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
944	chr12	47149093	47149094	rs12579903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.11		rs12579903-T	0.072393	1E-18		0.038255464	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
944	chr12	47149093	47149094	rs12579903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.11		rs12579903-T	0.072404	1E-17		0.037056882	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
944	chr12	47160240	47160241	rs117433039	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q13.11		rs117433039-T	0.96831	3E-11		0.0785461	[0.055-0.102] unit increase	NR [11722792] (imputed)	N
944	chr12	47169361	47169362	rs145432915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs145432915-?	NR	1E-8				NR [~ 8900000] (imputed)	N
944	chr12	47172416	47172417	rs77503738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q13.11		rs77503738-A	0.998327	3E-14		0.382943	[0.28-0.48] unit increase	NR [11722792] (imputed)	N
944	chr12	47172416	47172417	rs77503738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q13.11		rs77503738-A	0.998327	3E-13		0.364985	[0.27-0.46] unit increase	NR [11722792] (imputed)	N
944	chr12	47175865	47175866	rs12307687	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	12q13.11	SLC38A4	rs12307687-T	0.246	1E-8	(AA)	0.045	[0.029-0.061] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
944	chr12	47175865	47175866	rs12307687	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	12q13.11	SLC38A4	rs12307687-T	0.242	1E-6	(AA)	0.062	[0.037-0.087] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
944	chr12	47180007	47180008	rs79295634	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12q13.11	NR	rs79295634-G	0.06783	3E-8		0.002446	[0.0016-0.0033] unit increase	Affymetrix [NR] (imputed)	N
944	chr12	47180369	47180370	rs180435	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	12q13.11	NR	rs180435-G	0.809035	3E-9		0.009709	[0.0065-0.0129] unit increase	Affymetrix [16578495] (imputed)	N
944	chr12	47180880	47180881	rs77777887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12q13.11		rs77777887-T	NR	1E-10		0.0271	[0.019-0.035] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
944	chr12	47182530	47182531	rs76191003	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q13.11		rs76191003-C	0.931639	6E-10		0.0507283	[0.035-0.067] unit decrease	NR [11722792] (imputed)	N
944	chr12	47184041	47184042	rs12306007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.11		rs12306007-T	NR	1E-20		0.0163	[0.013-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
944	chr12	47184041	47184042	rs12306007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q13.11		rs12306007-T	0.185362	1E-11		0.0175191	[0.012-0.023] unit increase	Illumina [13479295] (imputed)	N
944	chr12	47184041	47184042	rs12306007	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.11	SLC38A4	rs12306007-?	NR	6E-14		0.02740469	[0.02-0.035] unit increase	Illumina [27896057] (imputed)	N
945	chr12	47187259	47187260	rs180438	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q13.11	SLC38A4	rs180438-G	0.194904	9E-21		0.036016	[0.028-0.044] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
945	chr12	47190535	47190545	rs34666594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q13.11		rs34666594-C	NR	7E-12		0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
945	chr12	47193817	47193818	rs2250010	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q13.11	NR	rs2250010-C	0.190106	2E-16		0.0210306	[0.016-0.026] unit decrease	NR [NR]	N
945	chr12	47198855	47198856	rs113674212	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q13.11		rs113674212-C	0.931833	3E-60		0.134105	[0.12-0.15] unit decrease	NR [11722792] (imputed)	N
945	chr12	47199548	47199549	rs79020793	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q13.11		rs79020793-G	0.931782	2E-20		0.0753072	[0.059-0.091] unit decrease	NR [11722792] (imputed)	N
945	chr12	47199548	47199549	rs79020793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q13.11		rs79020793-A	NR	1E-15		0.0338	[0.026-0.042] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
945	chr12	47201813	47201814	rs4554975	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q13.11	SLC38A4	rs4554975-G	0.64	6E-13	(Alanine)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
945	chr12	47218143	47218144	rs7967842	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q13.11		rs7967842-G	0.373163	8E-31		0.0491678	[0.041-0.058] unit increase	NR [11722792] (imputed)	N
945	chr12	47249427	47249428	rs118080406	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q13.11	NR	rs118080406-G	0.024545999999999957	2E-8		0.0153065	[0.01-0.0207] unit increase	Affymetrix [16582909] (imputed)	N
945	chr12	47249427	47249428	rs118080406	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q13.11	NR	rs118080406-G	0.024545999999999957	3E-9		0.0181663	[0.012-0.024] unit increase	Affymetrix [16582965] (imputed)	N
945	chr12	47265728	47265729	rs2711697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12q13.11		rs2711697-A	0.63005	2E-11		0.0270955	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
946	chr12	47317250	47317251	rs79936652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs79936652-?	NR	5E-20				NR [~ 8900000] (imputed)	N
946	chr12	47408290	47408291	rs17097464	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	12q13.11	intergenic	rs17097464-?	NR	1E-7	(docosahexaenoic fatty acid)			Illumina [621723]	N
946	chr12	47408290	47408291	rs17097464	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	12q13.11	intergenic	rs17097464-?	0.193	1E-8	(omega-3 PUFA)			Illumina [621723]	N
946	chr12	47409823	47409824	rs2711729	33575800	Mulford AJ	2021-02-11	Hum Mol Genet	Genetically regulated expression underlies cellular sensitivity to chemotherapy in diverse populations.	Etoposide drug response (IC50)	255 European and African ancestry individuals	NA	12q13.11	NR	rs2711729-G	NR	5E-8		0.8	unit increase	NR [3798298] (imputed)	N
946	chr12	47424033	47424034	rs7960974	33575800	Mulford AJ	2021-02-11	Hum Mol Genet	Genetically regulated expression underlies cellular sensitivity to chemotherapy in diverse populations.	Etoposide drug response (IC50)	171 African ancestry individuals	NA	12q13.11	NR	rs7960974-G	NR	1E-8		0.85	unit decrease	NR [9524322] (imputed)	N
946	chr12	47434140	47434141	rs17097518	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	12q13.11		rs17097518-A	0.919	8E-6		0.091	[0.052-0.13] unit decrease	Affymetrix [6030650] (imputed)	N
947	chr12	47479527	47479528	rs7979008	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	12q13.11	NR	rs7979008-C	0.6599999999999999	4E-6		1.1764705	[1.1-1.27]	NR [8807005] (imputed)	N
947	chr12	47484038	47484039	rs73101415	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	PCED1B	rs73101415-A	0.7464	2E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
947	chr12	47491534	47491535	rs188162791	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.11	PCED1B	rs188162791-A	0.0016	5E-6		1.2547	[0.72-1.79] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr12	47491534	47491535	rs188162791	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.11	PCED1B	rs188162791-A	0.0016	5E-6		1.2547	[0.72-1.79] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr12	47517694	47517695	rs11183750	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	12q13.11	PCED1B	rs11183750-?	NR	2E-6		7.142857	[2.5-20]	Illumina [5830976] (imputed)	N
947	chr12	47566240	47566241	rs11608419	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	12q13.11	PCED1B	rs11608419-G	0.277588	9E-6		0.787	[0.708 - 0.875]	Illumina [5400100] (imputed)	N
948	chr12	47580093	47580095	rs71890717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	12q13.11		rs71890717-C	NR	1E-8		0.1106	[0.073-0.149] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
948	chr12	47580093	47580095	rs71890717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	12q13.11		rs71890717-C	0.54305889	1E-8		0.110569656	[0.073-0.149] unit increase	Illumina [13134967] (imputed)	N
948	chr12	47590895	47590896	rs145242567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs145242567-?	NR	8E-9				NR [~ 8900000] (imputed)	N
948	chr12	47616074	47616075	rs832716	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.11	AMIGO2	rs832716-C	0.94390625	7E-7	(AMIGO2, 6914_15_3)	0.2685573	[0.16-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
948	chr12	47639525	47639526	rs11610206	19118814	Beecham GW	2009-01-03	Am J Hum Genet	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	12q13.11	FAM113B	rs11610206-?	NR	3E-7				Illumina [~ 2500000] (imputed)	N
948	chr12	47645048	47645048	rs36008356	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs36008356-C	0.670574	3E-9		0.0578048	[0.039-0.077] decrease	Affymetrix [11014269] (imputed)	N
949	chr12	47729594	47729595	rs215335	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	12q13.11	PCED1B, MIR4494	rs215335-T	0.489366041	4E-6		1.0564134	[1.031951273-1.081455483]	Illumina [10439017] (imputed)	N
949	chr12	47746229	47746233	rs143178873	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	12q13.11	PCED1B, RPAP3	rs143178873-?	NR	3E-7		0.101455	[0.063-0.14] unit decrease	Illumina [at least 950000] (imputed)	N
949	chr12	47771428	47771429	rs2074193	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	12q13.11	intergenic	rs2074193-C	0.21	5E-7		1.15	[1.09-1.21]	Affymetrix, Illumina [~ 2300000] (imputed)	N
949	chr12	47814971	47814972	rs1881744	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	12q13.11	intergenic	rs1881744-A		2E-6		0.228	unit increase	Illumina [5767231] (imputed)	N
950	chr12	47844661	47844662	rs112335739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q13.11		rs112335739-?	NR	2E-10				NR [~ 8900000] (imputed)	N
950	chr12	47852656	47852657	rs12230739	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	12q13.11	NR	rs12230739-G	NR	1E-6	(AA)	0.334187	[0.2-0.47] unit increase	Affymetrix [up to 6007810] (imputed)	N
950	chr12	47876806	47876807	rs186127431	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	12q13.11		rs186127431-C	0.0222447	1E-8		0.0428654	[0.028-0.058] unit increase	Illumina [7980478] (imputed)	N
950	chr12	47880148	47880149	rs7955374	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	12q13.11	VDR	rs7955374-T	0.13	1E-8		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
950	chr12	47907078	47907079	rs60163426	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	12q13.11		rs60163426-?	NR	5E-8				Affymetrix [NR] (imputed)	N
950	chr12	47923015	47923016	rs7307902	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.11	intergenic	rs7307902-G	0.243	1E-6	(Dinner intake, adj TEE )	0.05	[NR] kcal increase	Illumina [899892]	N
950	chr12	47934531	47934532	rs58366817	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	12q13.11	RPAP3	rs58366817-?	NR	1E-6		0.2	[0.12-0.28] unit decrease	Illumina [6319684] (imputed)	N
950	chr12	47963699	47963700	rs12821310	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q13.11	PCED1B, RPAP3	rs12821310-C	0.82	2E-10		0.0071	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
951	chr12	47983667	47983668	rs75422866	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	12q13.11	NR	rs75422866-?	NR	2E-6		0.1329	[0.078-0.188] unit decrease	Illumina [at least 560000] (imputed)	N
951	chr12	48044010	48044011	rs11168187	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	12q13.11	RPAP3	rs11168187-G	NR	3E-8		0.009	[0.0051-0.0129] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
951	chr12	48093561	48093562	rs116949241	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	12q13.11	NR	rs116949241-?	NR	6E-6		0.1262	[0.071-0.181] unit decrease	Illumina [at least 560000] (imputed)	N
952	chr12	48127014	48127015	rs886431	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	12q13.11		rs886431-G		4E-6		1.19	[1.10-1.27]	Affymetrix, Illumina [1722107] (imputed)	N
952	chr12	48130577	48130578	rs757282	28061514	Nannini DR	2017-01-01	Invest Ophthalmol Vis Sci	A Genome-Wide Association Study of Vertical Cup-Disc Ratio in a Latino Population.	Optic nerve measurement (cup-to-disc ratio)	3,596 Latino individuals	941 Latino individuals	12q13.11	RPAP3	rs757282-?		5E-6				Illumina [6844888] (imputed)	N
952	chr12	48131727	48131728	rs2072117	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.11	ENDOU	rs2072117-G	0.71125	4E-10	(ENDOU, 5656_53_3)	0.1629336	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
952	chr12	48134213	48134214	rs10875687	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENDOU	5,365 Icelandic ancestry individuals	NA	12q13.11		rs10875687-C	0.2875	4E-14		0.14977	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
952	chr12	48143314	48143315	rs145878042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.11	RAPGEF3	rs145878042-G	NR	8E-17		0.112211	[0.086-0.139] unit decrease	Affymetrix [319769] (imputed)	N
952	chr12	48143314	48143315	rs145878042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.11	RAPGEF3	rs145878042-G	NR	5E-18		0.116648	[0.09-0.143] unit decrease	Affymetrix [319769] (imputed)	N
952	chr12	48143314	48143315	rs145878042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.11	RAPGEF3	rs145878042-G	NR	5E-13		0.0983892	[0.072-0.125] unit decrease	Affymetrix [321114] (imputed)	N
952	chr12	48143314	48143315	rs145878042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.11	RAPGEF3	rs145878042-G	NR	1E-11		0.0924207	[0.066-0.119] unit decrease	Affymetrix [321169] (imputed)	N
952	chr12	48143314	48143315	rs145878042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.11	RAPGEF3	rs145878042-G	0.010796	2E-14		0.08305356	[0.062-0.104] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48143314	48143315	rs145878042	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.11	NR	rs145878042-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
952	chr12	48143314	48143315	rs145878042	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.11	NR	rs145878042-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
952	chr12	48143314	48143315	rs145878042	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q13.11	RAPGEF3	rs145878042-A	0.9894	1E-14		0.1073	[0.08-0.135] unit increase	Affymetrix, Illumina [at least 228985]	N
952	chr12	48143314	48143315	rs145878042	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q13.11	RAPGEF3	rs145878042-A	0.9886	1E-14		0.1081	[0.08-0.136] unit increase	Affymetrix, Illumina [at least 228985]	N
952	chr12	48143314	48143315	rs145878042	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q13.11	RAPGEF3	rs145878042-A	0.9895	7E-17		0.0846	[0.065-0.104] unit increase	Affymetrix, Illumina [at least 228985]	N
952	chr12	48143314	48143315	rs145878042	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q13.11	RAPGEF3	rs145878042-A	0.9885	5E-16		0.0836	[0.063-0.104] unit increase	Affymetrix, Illumina [at least 228985]	N
952	chr12	48143314	48143315	rs145878042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q13.11		rs145878042-?	NR	9E-20				NR [~ 8900000] (imputed)	N
952	chr12	48143314	48143315	rs145878042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs145878042-?	NR	7E-15				NR [~ 8900000] (imputed)	N
952	chr12	48143314	48143315	rs145878042	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q13.11	NR	rs145878042-A	0.9896	8E-17		0.0812	[0.062-0.1] unit increase	NR [~ 27400000] (imputed)	N
952	chr12	48143314	48143315	rs145878042	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q13.11	RAPGEF3	rs145878042-G	0.011	2E-15		0.066	[0.05-0.082] unit increase	Illumina [246328]	N
952	chr12	48160769	48160770	rs60776348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q13.11		rs60776348-C	NR	5E-13		0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
952	chr12	48160769	48160770	rs60776348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q13.11		rs60776348-C	NR	8E-19		0.0267	[0.021-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
952	chr12	48173351	48173352	rs4760636	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.11	HDAC7	rs4760636-T	0.23	6E-6	(network)	0.027	[0.015-0.039] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
952	chr12	48175569	48175570	rs74854988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q13.11	SLC48A1	rs74854988-T	0.192985	2E-14		0.021718638	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48175569	48175570	rs74854988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q13.11	SLC48A1	rs74854988-T	0.192934	9E-13		0.020161046	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48175569	48175570	rs74854988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q13.11	SLC48A1	rs74854988-T	0.19293	3E-11		0.018786242	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48177237	48177238	rs13632	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12q13.11	HDAC7	rs13632-?	0.2361	6E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
952	chr12	48178193	48178194	rs7307046	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q13.11	RAPGEF3, SLC48A1, HDAC7	rs7307046-G	0.5820000000000001	7E-6		1.0527425		NR [9372253] (imputed)	N
952	chr12	48178512	48178513	rs7972177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q13.11	HDAC7	rs7972177-G	0.332582	3E-11		0.01590981	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48178512	48178513	rs7972177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.11	HDAC7	rs7972177-G	0.332628	3E-13		0.0162632	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48178512	48178513	rs7972177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.11	HDAC7	rs7972177-G	0.332634	5E-16		0.019046733	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48178512	48178513	rs7972177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs7972177-G	0.289544	4E-16				Affymetrix, Illumina [20825802] (imputed)	N
952	chr12	48178512	48178513	rs7972177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.11	NR	rs7972177-G	0.331492	2E-18		0.017978	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
952	chr12	48178512	48178513	rs7972177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.11		rs7972177-?	NR	9E-22				NR [~ 8900000] (imputed)	N
952	chr12	48181373	48181374	rs1557848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q13.11		rs1557848-G	NR	6E-9		0.043	[0.028-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
952	chr12	48181373	48181374	rs1557848	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q13.11	HDAC7	rs1557848-G	0.135722	1E-8		0.05074972	[0.033-0.068] unit increase	Affymetrix [7288503] (imputed)	N
952	chr12	48181373	48181374	rs1557848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.11		rs1557848-?	NR	4E-12				NR [~ 8900000] (imputed)	N
952	chr12	48186562	48186563	rs2544026	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	12q13.11	HDAC7	rs2544026-?	NR	2E-13		1.062	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
952	chr12	48186562	48186563	rs2544026	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.11	HDAC7	rs2544026-T	NR	9E-8		1.043	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
952	chr12	48187253	48187254	rs75365750	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.11	HDAC7	rs75365750-G	0.043	5E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
952	chr12	48187600	48187601	rs73107980	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	12q13.11		rs73107980-T	0.241718	2E-10		0.0026329	[0.0018-0.0034] unit increase	Affymetrix [10829469] (imputed)	N
952	chr12	48187600	48187601	rs73107980	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	12q13.11	NR	rs73107980-T	0.24	8E-11		0.11	[0.077-0.143] unit increase	Affymetrix [10972371] (imputed)	N
952	chr12	48192061	48192062	rs34922454	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q13.11	HDAC7	rs34922454-C	0.3039	1E-13		0.02957638	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
952	chr12	48196981	48196982	rs55726902	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q13.11	HDAC7	rs55726902-G	0.8	3E-16		1.051	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
952	chr12	48202045	48202046	rs739842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q13.11	HDAC7	rs739842-C	0.635498	3E-12		0.016129881	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
952	chr12	48202045	48202046	rs739842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs739842-C	0.608851	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
952	chr12	48202045	48202046	rs739842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.11	NR	rs739842-C	0.639495	3E-15		0.015546	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
952	chr12	48202695	48202696	rs111264094	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12q13.11	HDAC7	rs111264094-C	0.9747	2E-9		0.0569	[0.039-0.075] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
952	chr12	48202940	48202941	rs11168244	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q13.11	HDAC7	rs11168244-C	0.768438	4E-9		1.0428624	[1.02837339612537-1.05755553761353]	NR [9572556] (imputed)	N
952	chr12	48202940	48202941	rs11168244	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.11	HDAC7	rs11168244-C		9E-6		0.353	unit increase	Affymetrix [at least 2696785] (imputed)	N
952	chr12	48202940	48202941	rs11168244	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.11	HDAC7	rs11168244-C		2E-10		0.318	unit increase	Affymetrix [at least 2696785] (imputed)	N
952	chr12	48202940	48202941	rs11168244	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.11	HDAC7	rs11168244-C		5E-8		0.165	unit increase	Affymetrix [at least 2696785] (imputed)	N
952	chr12	48204498	48204499	rs11168245	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	12q13.11	ENDOU, HDAC7, RAPGEF3, RPAP3, SLC48A1	rs11168245-?	NR	7E-11				Affymetrix [up to 7325140] (imputed)	N
952	chr12	48205357	48205358	rs56389811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	12q13.11		rs56389811-T	NR	8E-23		0.1225	[0.098-0.147] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
952	chr12	48205357	48205358	rs56389811	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q13.11	HDAC7	rs56389811-C	0.77	7E-11				NR [> 9500000] (imputed)	N
952	chr12	48205357	48205358	rs56389811	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	12q13.11	HDAC7	rs56389811-T	0.2383	5E-9				Affymetrix [15688218] (imputed)	N
952	chr12	48205357	48205358	rs56389811	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	12q13.11	HDAC7, SLC48A1, VDR	rs56389811-C	0.761	2E-10		1.078	[1.054-1.104]	Affymetrix [10894596] (imputed)	N
952	chr12	48208367	48208368	rs11168249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q13.11		rs11168249-C	NR	2E-35		0.0268	[0.022-0.031] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
952	chr12	48208367	48208368	rs11168249	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q13.11		rs11168249-T	0.539	4E-29				Affymetrix [10369434] (imputed)	N
952	chr12	48208367	48208368	rs11168249	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.11		rs11168249-T	0.539	2E-22				Affymetrix [10369434] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.11	HDAC7	rs11168249-C	0.461133	3E-13		0.016197508	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.11	HDAC7	rs11168249-C	0.460833	2E-17		0.018820757	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs11168249-C	0.391506	8E-60				Affymetrix, Illumina [24588908] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.11	NR	rs11168249-C	0.462004	9E-60		0.030467	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs11168249-T	0.537028	5E-17				Affymetrix, Illumina [17210439] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.11	NR	rs11168249-T	0.538578	9E-19		0.01685	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs11168249-C	0.411316	3E-21				Affymetrix, Illumina [23472807] (imputed)	N
952	chr12	48208367	48208368	rs11168249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q13.11	NR	rs11168249-C	0.461347	6E-24		0.019487	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
952	chr12	48208367	48208368	rs11168249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.11		rs11168249-?	NR	3E-8				NR [~ 8900000] (imputed)	N
952	chr12	48208367	48208368	rs11168249	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	12q13.11	HDAC7	rs11168249-?		3E-7				Illumina [9578670] (imputed)	N
952	chr12	48208367	48208368	rs11168249	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	12q13.11	HDAC7	rs11168249-?		7E-6				Illumina [9725440] (imputed)	N
952	chr12	48208367	48208368	rs11168249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12q13.11	HDAC7	rs11168249-C	0.4605	2E-10		0.02301348	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
952	chr12	48208367	48208368	rs11168249	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12q13.11	HDAC7	rs11168249-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
952	chr12	48208367	48208368	rs11168249	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q13.11	NR	rs11168249-G	0.4676	7E-7	(EA)	1.0644168	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
952	chr12	48208367	48208368	rs11168249	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	12q13.11	HDAC7	rs11168249-G	0.466	5E-9		1.15	[1.10-1.21]	Illumina [140322] (imputed)	N
952	chr12	48208367	48208368	rs11168249	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q13.11	VDR	rs11168249-C	0.467	8E-9		1.054	[1.024-1.084]	Affymetrix, Illumina [1230000] (imputed)	N
952	chr12	48209164	48209165	rs11168250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q13.11		rs11168250-T	NR	2E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
952	chr12	48209662	48209663	rs11168251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q13.11		rs11168251-A	NR	1E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
952	chr12	48210786	48210787	rs61917655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q13.11		rs61917655-T	NR	4E-8		0.0198	[0.013-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
952	chr12	48212718	48212719	rs73109811	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.11	HDAC7	rs73109811-T	0.1982	6E-18		0.04072983	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
952	chr12	48213385	48213386	rs148637595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.11	HDAC7	rs148637595-G	0.287522	3E-28		0.02786866	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48213385	48213386	rs148637595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.11	HDAC7	rs148637595-G	0.287514	1E-41		0.034122813	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48213719	48213720	rs113736796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.11	HDAC7	rs113736796-G	0.039157	2E-32		0.07044758	[0.059-0.082] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48213719	48213720	rs113736796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.11	HDAC7	rs113736796-G	0.039147	3E-39		0.07773178	[0.066-0.089] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48213719	48213720	rs113736796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q13.11	HDAC7	rs113736796-G	0.03898	6E-15		0.045642037	[0.034-0.057] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48213719	48213720	rs113736796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q13.11	HDAC7	rs113736796-G	0.038973	2E-16		0.048169993	[0.037-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
952	chr12	48213941	48213942	rs11168254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.11	HDAC7	rs11168254-T	0.053384	3E-9		0.029679826	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
952	chr12	48214824	48214825	rs7487637	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	12q13.11	NR	rs7487637-?	NR	9E-7		0.0706	[0.042-0.099] unit increase	Illumina [at least 560000] (imputed)	N
952	chr12	48216528	48216529	rs2544027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.11	HDAC7	rs2544027-A	NR	1E-8		0.0160336	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
952	chr12	48216528	48216529	rs2544027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.11	HDAC7	rs2544027-A	NR	5E-9		0.0165384	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
952	chr12	48216528	48216529	rs2544027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.11	HDAC7	rs2544027-A	NR	2E-10		0.0181625	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
952	chr12	48216528	48216529	rs2544027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.11	HDAC7	rs2544027-A	NR	2E-9		0.0172896	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
952	chr12	48216528	48216529	rs2544027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.11	NR	rs2544027-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
952	chr12	48216528	48216529	rs2544027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.11	NR	rs2544027-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
952	chr12	48219825	48219826	rs11168258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.11	HDAC7	rs11168258-T	0.289477	1E-11		0.016864402	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
952	chr12	48221186	48221187	rs7309814	25590795	Yazar S	2015-04-01	JAMA Ophthalmol	Genetic and environmental factors in conjunctival UV autofluorescence.	Conjunctival UV autofluorescence (CUVAF)	1,251 European ancestry individuals	NA	12q13.11	HDAC7	rs7309814-?		6E-7		13.97	[8.48-19.46] unit increase	Illumina [5003381] (imputed)	N
952	chr12	48228767	48228768	rs11608702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.11		rs11608702-?	NR	2E-9				NR [~ 8900000] (imputed)	N
953	chr12	48238220	48238221	rs739837	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	12q13.11	VDR	rs739837-G	0.474393	6E-9		0.063426755	[0.042-0.085] unit decrease	Affymetrix [7260263] (imputed)	N
953	chr12	48254352	48254353	rs117913411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q13.11		rs117913411-A	NR	4E-9		0.1314	[0.088-0.175] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
953	chr12	48254352	48254353	rs117913411	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q13.11	NR	rs117913411-T	0.966332	3E-10		0.0481096	[0.033-0.064] unit increase	Affymetrix [16580851] (imputed)	N
953	chr12	48254352	48254353	rs117913411	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q13.11	VDR	rs117913411-A	0.0324951	4E-9		0.13136138	[0.088-0.175] unit increase	Affymetrix [7288503] (imputed)	N
953	chr12	48254352	48254353	rs117913411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q13.11		rs117913411-?	NR	5E-10				NR [~ 8900000] (imputed)	N
953	chr12	48255948	48255949	rs2239181	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	12q13.11	VDR	rs2239181-?		1E-7				Illumina [479403]	N
953	chr12	48269797	48269798	rs7974353	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	12q13.11	VDR	rs7974353-?	NR	5E-8		0.75	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
953	chr12	48272894	48272895	rs2228570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.11	VDR	rs2228570-G	0.614879	1E-9		0.0138518615	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
953	chr12	48272894	48272895	rs2228570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.11		rs2228570-?	NR	6E-9				NR [~ 8900000] (imputed)	N
953	chr12	48308071	48308072	rs117843845	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	12q13.11	VDR	rs117843845-T	0.02	9E-13	(YKL-40)	47.572	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
953	chr12	48321698	48321699	rs7311856	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q13.11	NR	rs7311856-?	NR	3E-30				Affymetrix [NR]	N
953	chr12	48337068	48337069	rs4073729	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs4073729-A	NR	3E-19		0.0304	[0.024-0.037] unit increase	Affymetrix [9000000] (imputed)	N
953	chr12	48337068	48337069	rs4073729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.11		rs4073729-?	NR	5E-13				NR [~ 8900000] (imputed)	N
953	chr12	48337516	48337517	rs7301728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs7301728-A	NR	6E-11		0.0541	[0.038-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
953	chr12	48338421	48338422	rs4547172	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q13.11	VDR	rs4547172-A	0.284436	3E-8		0.049543403	[0.032-0.067] unit increase	Affymetrix [7288503] (imputed)	N
953	chr12	48346467	48346468	rs140829541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.11		rs140829541-?	NR	5E-8				NR [~ 8900000] (imputed)	N
953	chr12	48357013	48357014	rs4760674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q13.11	TMEM106C	rs4760674-C	0.616088	5E-12		0.015703138	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48366448	48366449	rs2071358	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	12q13.11	NR	rs2071358-A		8E-6				NR [525577]	N
954	chr12	48368988	48368989	rs4760608	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q13.11	TMEM106C	rs4760608-?	NR	3E-6	(xanthine)	0.21405868	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
954	chr12	48371896	48371897	rs376772481	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	12q13.11		rs376772481-?	NR	9E-12		0.547947	[0.39-0.7] unit decrease	NR [9800000] (imputed)	N
954	chr12	48374010	48374011	rs57444859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.11		rs57444859-G	NR	2E-14		0.0243	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
954	chr12	48374512	48374513	rs1635554	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	12q13.11	COL2A1	rs1635554-?	0.911	1E-6		1.2362387	[1.14-1.34]	Affymetrix, Illumina [7701827] (imputed)	N
954	chr12	48375474	48375475	rs1793937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q13.11	COL2A1	rs1793937-G	0.400982	9E-11		0.014673383	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr12	48375567	48375568	rs1635553	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	12q13.11		rs1635553-?	NR	6E-6		1.08141	[1.05-1.12]	NR [680312]	N
954	chr12	48376968	48376969	rs11168338	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	12q13.11	COL2A1	rs11168338-?	NR	6E-7		5.007	NR unit increase	Illumina [up to 1520000] (imputed)	N
954	chr12	48377755	48377756	rs55744743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs55744743-?	NR	5E-21				NR [~ 8900000] (imputed)	N
954	chr12	48377969	48377970	rs1635550	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	12q13.11	NR	rs1635550-?		1E-8				NR [7428630] (imputed)	N
954	chr12	48377969	48377970	rs1635550	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q13.11	CDC25A, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, C3orf84, CCDC36, RP11-3B7.1, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, TRAIP, CAMKV, MST1R, CTD-2330K9.3, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, LSMEM2, IFRD2, HYAL2, TUSC2, RASSF1, ZMYND10, NPRL2, CYB561D2, XXcos-LUCA11.5, TMEM115, CACNA2D2, CISH, MAPKAPK3, DOCK3	rs1635550-?		4E-8				NR [7428630] (imputed)	N
954	chr12	48387056	48387057	rs1793911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.11	COL2A1	rs1793911-C	0.486968	3E-10		0.013941138	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48388101	48388102	rs55921916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs55921916-A	NR	5E-13		0.0352	[0.026-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
954	chr12	48392432	48392433	rs1793958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.11	NR	rs1793958-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
954	chr12	48393097	48393098	rs12308909	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.11	NR	rs12308909-A	0.222006	5E-10		0.0503684	[0.034-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
954	chr12	48398079	48398080	rs3803183	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.11		rs3803183-T	0.16	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
954	chr12	48398079	48398080	rs3803183	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.11		rs3803183-T	0.16	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
954	chr12	48398079	48398080	rs3803183	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.11	NR	rs3803183-T	0.1552	5E-11				NR [9056863] (imputed)	N
954	chr12	48403764	48403765	rs11168351	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	12q13.11	NR	rs11168351-?	NR	9E-6		1.2231	[NR]	Affymetrix [722112]	N
954	chr12	48403837	48403838	rs68168422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q13.11		rs68168422-G	NR	5E-9		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
954	chr12	48403838	48403839	rs78374304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.11	RP1-228P16.3	rs78374304-A	0.617871	1E-17		0.020661158	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48403838	48403839	rs78374304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.11	RP1-228P16.3	rs78374304-A	0.617865	3E-13		0.018675242	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48403838	48403839	rs78374304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.11	RP1-228P16.3	rs78374304-A	0.617852	2E-12		0.017945558	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48408012	48408013	rs1990028	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.11	AC004801.4	rs1990028-A	0.7467	1E-12		0.0154	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
954	chr12	48408736	48408737	rs80120825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs80120825-C	NR	4E-22		0.0959	[0.076-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
954	chr12	48409053	48409054	rs12819124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.11		rs12819124-?	NR	9E-10				NR [~ 8900000] (imputed)	N
954	chr12	48409053	48409054	rs12819124	28887542	Prins BP	2017-09-08	Sci Rep	Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations.	Glycated hemoglobin levels	5,288 European ancestry women, 4,148 European ancestry men	9,888 European ancestry individuals, 16,013 individuals	12q13.11	RP1- 228P16.4	rs12819124-A	0.47	4E-9		0.03	[0.010-0.050] Mmol/mol decrease	Illumina [at least 23756480] (imputed)	N
954	chr12	48410516	48410517	rs6580649	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	12q13.11	intergenic	rs6580649-?	NR	5E-6		1.2169892	[1.12-1.32]	Illumina [1024001]	N
954	chr12	48412591	48412592	rs2079295	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL1A1	5,361 Icelandic ancestry individuals	NA	12q13.11		rs2079295-C	0.3419	6E-231		0.589138	[0.55-0.62] unit decrease	Illumina [7506463] (imputed)	N
954	chr12	48414057	48414058	rs7299271	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q13.11	RP1-228P16.5	rs7299271-T	0.371	9E-29	(Collagen alpha-1(I) chain, COL1A1.11140.56.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
954	chr12	48415756	48415757	rs4760609	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	12q13.11	COL2A1, SENP1	rs4760609-C	0.819	3E-12				NR [509413]	N
954	chr12	48419617	48419618	rs80130819	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q13.11	NR	rs80130819-A	NR	4E-12		1.095	[1.07-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
954	chr12	48419617	48419618	rs80130819	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q13.11	NR	rs80130819-A	0.91	2E-11		1.1	[1.07-1.13]	Illumina [20370935] (imputed)	N
954	chr12	48419617	48419618	rs80130819	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	12q13.11	RP1-228P16.4	rs80130819-A	0.91	4E-8	(EA)	1.13	[1.08-1.17]	Affymetrix, Illumina [up to 16852405] (imputed)	N
954	chr12	48419617	48419618	rs80130819	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	12q13.11	RP1-228P16.4	rs80130819-A	0.91	2E-9		1.14	[1.09-1.18]	Affymetrix, Illumina [up to 16852405] (imputed)	N
954	chr12	48420213	48420214	rs7967762	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total knee replacement)	18,200 European ancestry cases, 233,841 European ancestry controls	NA	12q13.11		rs7967762-T	0.156	4E-10		1.1093786	[1.07386533-1.146066223]	Affymetrix, Illumina [NR] (imputed)	N
954	chr12	48420712	48420713	rs11168363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs11168363-G	NR	3E-35		0.0475	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
954	chr12	48421448	48421449	rs4760611	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL1A1	5,361 Icelandic ancestry individuals	NA	12q13.11		rs4760611-T	0.132	3E-10		0.176366	[0.12-0.23] unit decrease	Illumina [7506463] (imputed)	N
954	chr12	48425234	48425235	rs2269936	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q13.11	COL2A1, SENP1	rs2269936-?	NR	5E-10		0.507	[0.34-0.67] unit decrease	Affymetrix [11100000] (imputed)	N
954	chr12	48427328	48427329	rs1859440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.11		rs1859440-C	0.376275	2E-16		0.01897134	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48427328	48427329	rs1859440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.11		rs1859440-C	0.376256	9E-15		0.017885145	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48429775	48429776	rs733592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q13.11	intergenic	rs733592-T	0.3767	5E-9		0.02221088	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
954	chr12	48481839	48481840	rs72405174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q13.11	SENP1	rs72405174-C	0.227832	1E-11		0.018360166	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr12	48481839	48481840	rs72405174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q13.11	SENP1	rs72405174-C	0.227805	3E-9		0.015912851	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr12	48493373	48493374	rs10875742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q13.11		rs10875742-?	NR	6E-9				NR [~ 8900000] (imputed)	N
954	chr12	48493992	48493993	rs114458593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs114458593-A	NR	4E-14		0.0417	[0.031-0.052] unit increase	Affymetrix [9000000] (imputed)	N
954	chr12	48496564	48496565	rs75224897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.11	SENP1	rs75224897-C	0.092432	4E-14		0.031333342	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
954	chr12	48496564	48496565	rs75224897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.11	SENP1	rs75224897-C	0.092425	2E-18		0.03623931	[0.028-0.044] unit increase	Affymetrix [93095623] (imputed)	N
955	chr12	48499130	48499131	rs2408955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.11	PFKM	rs2408955-T	0.51635	4E-21		0.021075314	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48499130	48499131	rs2408955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs2408955-T	0.520004	2E-74				Affymetrix, Illumina [24653286] (imputed)	N
955	chr12	48499130	48499131	rs2408955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q13.11	NR	rs2408955-T	0.515965	2E-75		0.035504	[0.032-0.039] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
955	chr12	48499130	48499131	rs2408955	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	12q13.11	SENP1	rs2408955-T	0.5039	1E-15		0.0124	[0.0093-0.0155] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
955	chr12	48499930	48499931	rs4760619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q13.11	PFKM, SENP1	rs4760619-T	0.166706	4E-13		0.021690238	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48507918	48507919	rs2107638	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q13.11	PFKM	rs2107638-?	NR	7E-6	(histidine)	0.16133654	[0.091-0.232] unit increase	Affymetrix [at least 2500000] (imputed)	N
955	chr12	48512284	48512285	rs4760682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	12q13.11		rs4760682-C	0.186769	4E-114		0.120635	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
955	chr12	48512284	48512285	rs4760682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q13.11		rs4760682-A	NR	2E-156		0.0785	[0.073-0.084] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
955	chr12	48512284	48512285	rs4760682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q13.11		rs4760682-A	NR	4E-49		0.0357	[0.031-0.04] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
955	chr12	48512284	48512285	rs4760682	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12q13.11	PFKM	rs4760682-A	0.7994	3E-20		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-A	0.81313	6E-18		0.02601293	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-A	0.81316	5E-18		0.0242943	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-C	0.813124	3E-9		0.0170563	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-A	0.813211	1E-11		0.019469231	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-A	0.813111	3E-45		0.044170123	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.11	PFKM	rs4760682-A	0.813138	5E-58		0.05020881	[0.044-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.819063	1E-40				Affymetrix, Illumina [24332387] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.813064	4E-43		0.032712	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.816857	7E-26				Affymetrix, Illumina [24246363] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.813086	6E-27		0.025033	[0.02-0.03] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.812879	3E-10		0.016247	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.81687	3E-109				Affymetrix, Illumina [24558453] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q13.11	NR	rs4760682-A	0.813002	9E-110		0.052677	[0.048-0.057] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
955	chr12	48512284	48512285	rs4760682	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.11	PFKM	rs4760682-C		5E-61		0.045	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
955	chr12	48512284	48512285	rs4760682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.11		rs4760682-?	NR	5E-39				NR [~ 8900000] (imputed)	N
955	chr12	48512284	48512285	rs4760682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	12q13.11	PFKM	rs4760682-A	0.813	1E-26		0.04847573	[0.04-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
955	chr12	48512284	48512285	rs4760682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	12q13.11	PFKM	rs4760682-A	0.813	4E-34		0.05493075	[0.046-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
955	chr12	48513085	48513086	rs12306290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.11	Intergenic	rs12306290-T	0.6896	3E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
955	chr12	48518263	48518264	rs10875746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs10875746-C	NR	1E-40		0.0383	[0.033-0.044] unit increase	Affymetrix [9000000] (imputed)	N
955	chr12	48518263	48518264	rs10875746	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	12q13.11	PFKM	rs10875746-A	0.76	8E-6		1.2	1.11-1.30	Affymetrix, Illumina [2500000] (imputed)	N
955	chr12	48523527	48523528	rs181325352	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	12q13.11	PFKM	rs181325352-A	2.0E-4	7E-51		21.6714	[18.84-24.5] mmHg increase	Affymetrix [NR] (imputed)	N
955	chr12	48531916	48531917	rs10875749	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q13.11	NR	rs10875749-A	0.609	6E-10		0.00682631	[0.0047-0.009] unit increase	NR [9732723] (imputed)	N
955	chr12	48535610	48535611	rs770066278	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	12q13.11		rs770066278-?	NR	1E-9		0.655432	[0.43-0.88] unit decrease	NR [9800000] (imputed)	N
955	chr12	48573107	48573108	rs192096194	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.11	NR	rs192096194-C	0.9913	3E-8		0.2456	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
955	chr12	48580133	48580134	rs74432603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs74432603-A	NR	8E-30		0.0666	[0.055-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
955	chr12	48594881	48594882	rs79054759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs79054759-G	NR	2E-41		0.0568	[0.049-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
955	chr12	48597052	48597053	rs17122812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q13.11		rs17122812-?	NR	5E-10				NR [~ 8900000] (imputed)	N
955	chr12	48623724	48623725	rs374450628	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12q13.11		rs374450628-A	NR	8E-10		0.13	[0.091-0.169] unit increase	Illumina [110396782]	N
956	chr12	48653002	48653003	rs10783243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q13.11		rs10783243-?	NR	3E-9				NR [~ 8900000] (imputed)	N
956	chr12	48653002	48653003	rs10783243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.11		rs10783243-A	0.5228	6E-11		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
956	chr12	48655267	48655268	rs7135989	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.11	Intergenic	rs7135989-T	0.3038	6E-11	(MTAG)	0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr12	48660766	48660767	rs75193455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs75193455-C	NR	3E-10		0.0604	[0.042-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr12	48698039	48698040	rs17226611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs17226611-A	NR	3E-34		0.0356	[0.03-0.041] unit increase	Affymetrix [9000000] (imputed)	N
956	chr12	48699606	48699617	rs201673768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q13.11		rs201673768-T	NR	2E-26		0.0228	[0.019-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
956	chr12	48699606	48699617	rs201673768	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.11	intergenic	rs201673768-T	0.6476	1E-9		0.02304875	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr12	48702064	48702065	rs11168516	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.11	H1FNT	rs11168516-T	0.2193	4E-10		0.2472	[0.17-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
956	chr12	48703224	48703225	rs17825134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.11		rs17825134-?	NR	2E-12				NR [~ 8900000] (imputed)	N
956	chr12	48703521	48703522	rs1387259	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	12q13.11	RP11-370I10.2, ZNF641	rs1387259-A		4E-7	(men)	0.078	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
956	chr12	48703521	48703522	rs1387259	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	12q13.11	RP11-370I10.2, ZNF641	rs1387259-A		2E-6		0.052	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
956	chr12	48709102	48709103	rs11168520	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	12q13.11		rs11168520-C	0.541096	3E-18		0.0384442	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
956	chr12	48711866	48711867	rs1489110	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.11	H1FNT	rs1489110-T	0.3777	3E-18		0.1715	[0.13-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
956	chr12	48712931	48712932	rs2732469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q13.11		rs2732469-A	NR	1E-52		0.0297	[0.026-0.033] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
956	chr12	48712931	48712932	rs2732469	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q13.11	NR	rs2732469-T	0.584	5E-14		0.0316	[0.023-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
956	chr12	48718807	48718808	rs2468947	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	12q13.11		rs2468947-A	NR	1E-8		1.1328877	NR	Affymetrix [7846216] (imputed)	N
956	chr12	48720826	48720827	rs75134025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs75134025-C	NR	1E-9		0.0496	[0.034-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr12	48721633	48721634	rs2261608	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q13.11	H1FNT	rs2261608-A	0.3528	3E-21		0.1693	[0.13-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
956	chr12	48724492	48724493	rs2054903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.11		rs2054903-?	NR	2E-12				NR [~ 8900000] (imputed)	N
956	chr12	48736302	48736303	rs2732480	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q13.11	NR	rs2732480-C	0.5648	3E-13		0.0337	[0.025-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
956	chr12	48736302	48736303	rs2732480	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.11	ZNF641	rs2732480-A		7E-49		0.032	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
956	chr12	48736302	48736303	rs2732480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q13.11	ZNF641	rs2732480-A	0.4274	1E-17		0.03060888	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr12	48736302	48736303	rs2732480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	12q13.11	ZNF641	rs2732480-A	0.4274	8E-29		0.03986448	[0.033-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr12	48736302	48736303	rs2732480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	12q13.11	ZNF641	rs2732480-A	0.4274	4E-36		0.04469711	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr12	48736984	48736985	rs2732481	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12q13.11	ZNF641	rs2732481-G	0.2444	2E-9		6.014	NR z score decrease	Illumina [26237160] (imputed)	N
956	chr12	48740854	48740855	rs2634675	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q13.11	ZNF641	rs2634675-A	0.52	2E-17		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
956	chr12	48740854	48740855	rs2634675	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12q13.11	ZNF641	rs2634675-A	0.4578	4E-16		0.0028	[0.002-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
957	chr12	48762062	48762062	rs36089652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q13.11		rs36089652-AT	NR	5E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
957	chr12	48772256	48772257	rs117931765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs117931765-A	NR	1E-10		0.0317	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
957	chr12	48813175	48813176	rs75561665	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs75561665-G	NR	8E-10		0.0558	[0.038-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
957	chr12	48842644	48842645	rs73102648	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	12q13.11	ANP32D	rs73102648-C	0.0314	6E-6		0.0199	[0.011-0.029] unit increase	Affymetrix [~ 7740000] (imputed)	N
957	chr12	48888593	48888594	rs11458	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.11	C12orf54	rs11458-C		3E-11		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
958	chr12	48901712	48901713	rs144714606	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.11	NR	rs144714606-A	0.0132	3E-8		0.1878	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
958	chr12	48919555	48919556	rs2731073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs2731073-G	NR	7E-13		0.0286	[0.021-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
958	chr12	48933232	48933233	rs11168618	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	12q13.11	OR8S1, LALBA	rs11168618-T	0.137	1E-7		0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
958	chr12	48946230	48946231	rs193153567	26058915	Tin A	2015-05-29	BMC Genet	Genetic loci for serum magnesium among African-Americans and gene-environment interaction at MUC1 and TRPM6 in European-Americans: the Atherosclerosis Risk in Communities (ARIC) study.	Magnesium levels	2,737 African American individuals	942 African American individuals	12q13.11	OR8S1	rs193153567-T	0.1	5E-7		0.017	[NR] mmol/L decrease	Affymetrix [14825944] (imputed)	N
958	chr12	48962868	48962869	rs2232566	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q13.11	LALBA	rs2232566-G	NR	6E-6	(women)	0.0423734	[0.024-0.061] unit decrease	Illumina [13520550] (imputed)	N
958	chr12	48978298	48978299	rs7311287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.11	NR	rs7311287-C	NR	2E-11		0.0382	[0.027-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
958	chr12	49020128	49020129	rs10875849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.11		rs10875849-?	NR	8E-10				NR [~ 8900000] (imputed)	N
959	chr12	49026995	49026996	rs7486636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.11	OR11M1P	rs7486636-A	0.325134	1E-12		0.017194364	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr12	49035057	49035061	rs142952672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q13.11		rs142952672-C	NR	2E-13		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
959	chr12	49036346	49036347	rs56365029	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q13.11	NR	rs56365029-A	0.978247	1E-10		0.017341	[0.012-0.023] unit increase	Affymetrix [16582909] (imputed)	N
959	chr12	49036346	49036347	rs56365029	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q13.11	NR	rs56365029-A	0.978247	8E-9		0.01781	[0.012-0.024] unit increase	Affymetrix [16582965] (imputed)	N
959	chr12	49036482	49036483	rs7973954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q13.11		rs7973954-G	NR	2E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
959	chr12	49037051	49037052	rs75728872	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.11		rs75728872-?	NR	4E-18		0.0822906	[0.063-0.102] unit increase	Affymetrix [20259828] (imputed)	N
959	chr12	49056662	49056663	rs1895994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.11	NR	rs1895994-A	0.32446	4E-11		0.012955	[0.0091-0.0168] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
959	chr12	49072793	49072794	rs118067775	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	12q13.11	KANSL2, SNORA34, MIR1291, SNORA2A, SNORA2B, CCNT1, LOC255411, ADCY6, MIR4701	rs118067775-C	0.0348	1E-6		4.12	[3.55-4.69]	Illumina [8809853] (imputed)	N
959	chr12	49080697	49080698	rs73108566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.11		rs73108566-?	NR	1E-14				NR [~ 8900000] (imputed)	N
959	chr12	49097211	49097212	rs7964801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q13.12		rs7964801-T	NR	1E-24		0.0271	[0.022-0.032] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
959	chr12	49101745	49101746	rs61942058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs61942058-G	0.314764	5E-10				Affymetrix, Illumina [24649327] (imputed)	N
959	chr12	49106360	49106360	rs199785243	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12q13.12	NR	rs199785243-CT	0.3251	2E-25		0.002447	[0.002-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
959	chr12	49110602	49110603	rs139053146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs139053146-?	NR	2E-18				NR [~ 8900000] (imputed)	N
959	chr12	49125026	49125027	rs11168705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q13.12	LINC00935	rs11168705-A	0.31351	6E-11		0.015591266	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr12	49147909	49147910	rs7977935	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12q13.12	NR	rs7977935-A	NR	3E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
959	chr12	49148326	49148327	rs12424545	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q13.12	LINC00935	rs12424545-A	0.2314	5E-6		0.0365	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr12	49156219	49156220	rs28889716	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q13.12	LINC00935	rs28889716-?		6E-6				Illumina [4322238] (imputed)	N
960	chr12	49163804	49163805	rs189989711	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q13.12	ADCY6	rs189989711-A	0.9782	7E-6		0.1196	[0.067-0.172] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr12	49168797	49168798	rs3730071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q13.12		rs3730071-A	NR	4E-9		0.0356	[0.024-0.047] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
960	chr12	49180827	49180828	rs35801460	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q13.12	NR	rs35801460-G	0.796971	6E-9		0.0204154	[0.014-0.027] unit increase	Affymetrix [16580851] (imputed)	N
960	chr12	49218170	49218171	rs2070615	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	12q13.12	RND1, DDX23, CANCNB3	rs2070615-G	NR	1E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
960	chr12	49223540	49223541	rs17123349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q13.12		rs17123349-?	NR	1E-9				NR [~ 8900000] (imputed)	N
960	chr12	49224107	49224108	rs11551274	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs11551274-C	0.0301	3E-9	(European)	0.1071	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
960	chr12	49224107	49224108	rs11551274	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs11551274-C	0.0295	2E-11		0.1137	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
960	chr12	49238188	49238189	rs61941109	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.12	DDX23	rs61941109-A	0.2846	9E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
960	chr12	49252172	49252180	rs1385144527	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q13.12	NR	rs1385144527-T	0.02091	2E-8	(PCK1)	0.1877	NR unit increase	Illumina [1671387] (imputed)	N
960	chr12	49260690	49260691	rs10875882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.12	Intergenic	rs10875882-T	0.4611	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
960	chr12	49263633	49263634	rs2926799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs2926799-?	NR	3E-30				NR [~ 8900000] (imputed)	N
961	chr12	49305786	49305787	rs138650910	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.12	CCDC65	rs138650910-A	0.9657	4E-14		0.4444	[0.33-0.56] mmHg decrease	Affymetrix [NR] (imputed)	N
961	chr12	49319035	49319036	rs12829682	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs12829682-?	NR	2E-9		0.0382365	[0.026-0.051] unit increase	Affymetrix [20259828] (imputed)	N
961	chr12	49349855	49349856	rs833823	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	ARF3	rs833823-A	0.0271371	2E-14		0.0439035	[0.033-0.055] unit increase	NR [13737936] (imputed)	N
961	chr12	49373409	49373410	rs61758378	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	WNT1	rs61758378-T	0.99421	1E-19		0.112609	[0.088-0.137] unit increase	NR [13737936] (imputed)	N
961	chr12	49373409	49373410	rs61758378	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs61758378-?	NR	1E-11		0.094913	[0.067-0.122] unit increase	Affymetrix [20259828] (imputed)	N
961	chr12	49379122	49379123	rs78150433	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	WNT1	rs78150433-G	0.97425	7E-17		0.0495523	[0.038-0.061] unit decrease	NR [13737936] (imputed)	N
961	chr12	49379122	49379123	rs78150433	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs78150433-?	NR	2E-10		0.039526	[0.027-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
961	chr12	49379536	49379537	rs118115924	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	WNT1	rs118115924-G	0.98785	8E-144		0.221785	[0.2-0.24] unit increase	NR [13737936] (imputed)	N
961	chr12	49379536	49379537	rs118115924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.12		rs118115924-?	NR	1E-15				NR [~ 8900000] (imputed)	N
961	chr12	49379536	49379537	rs118115924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs118115924-?	NR	8E-117				NR [~ 8900000] (imputed)	N
961	chr12	49379536	49379537	rs118115924	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs118115924-?	NR	3E-111		0.21155	[0.19-0.23] unit increase	Affymetrix [20259828] (imputed)	N
961	chr12	49379536	49379537	rs118115924	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	12q13.12	NR	rs118115924-T	0.0143	6E-10		0.3132	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
961	chr12	49379536	49379537	rs118115924	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs118115924-T	0.0145	8E-18	(European)	0.2766	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
961	chr12	49379536	49379537	rs118115924	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs118115924-T	0.0139	7E-21		0.2822	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
961	chr12	49379536	49379537	rs118115924	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.12	WNT1	rs118115924-G	0.988317	3E-18	(men)	0.20072	[0.15-0.25] unit increase	NR [17166351] (imputed)	N
961	chr12	49379536	49379537	rs118115924	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.12	WNT1	rs118115924-G	0.98816	3E-36		0.186451	[0.16-0.22] unit increase	NR [17166351] (imputed)	N
961	chr12	49379536	49379537	rs118115924	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.12	WNT1	rs118115924-G	0.988024	2E-18	(women)	0.176477	[0.14-0.22] unit increase	NR [17166351] (imputed)	N
961	chr12	49385678	49385679	rs10875906	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	DDN	rs10875906-C	0.72885	3E-70		0.038268	[0.034-0.042] unit decrease	NR [13737936] (imputed)	N
961	chr12	49385678	49385679	rs10875906	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs10875906-?	NR	1E-39		0.0298419	[0.025-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
961	chr12	49385678	49385679	rs10875906	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.12	DDN	rs10875906-C	0.721173	6E-16		0.0307716	[0.023-0.038] unit decrease	NR [17166351] (imputed)	N
961	chr12	49385678	49385679	rs10875906	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.12	DDN	rs10875906-C	0.720953	2E-11	(women)	0.0356876	[0.025-0.046] unit decrease	NR [17166351] (imputed)	N
961	chr12	49385698	49385699	rs146865992	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q13.12	NR	rs146865992-T	NR	8E-9		5.779	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
961	chr12	49389319	49389320	rs1054442	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	12q13.12	NR	rs1054442-A	0.360835	2E-15		0.05210266	[0.039-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
961	chr12	49389319	49389320	rs1054442	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	12q13.12		rs1054442-?	NR	3E-12				NR [7857346] (imputed)	N
961	chr12	49389319	49389320	rs1054442	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q13.12	ENSG00000258283	rs1054442-?	NR	4E-8		0.011417595	[0.0073-0.0155] unit decrease	NR [7306098]	N
961	chr12	49389319	49389320	rs1054442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q13.12		rs1054442-?	NR	3E-15				NR [~ 8900000] (imputed)	N
961	chr12	49389319	49389320	rs1054442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q13.12		rs1054442-?	NR	2E-8				NR [~ 8900000] (imputed)	N
961	chr12	49389319	49389320	rs1054442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs1054442-A	0.6223	1E-20		0.0136	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
961	chr12	49389319	49389320	rs1054442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.12	Intergenic	rs1054442-A	0.6223	3E-22	(MTAG)	0.0132	[0.01-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
961	chr12	49389319	49389320	rs1054442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q13.12	Intergenic	rs1054442-A	0.6249	7E-22	(MTAG)	0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
961	chr12	49389319	49389320	rs1054442	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q13.12	NR	rs1054442-A	NR	3E-14		7.621	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
961	chr12	49389319	49389320	rs1054442	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q13.12	ENSG00000258283	rs1054442-?	NR	2E-12		0.012305	[0.0089-0.0157] unit increase	Affymetrix [805426] (imputed)	N
961	chr12	49389319	49389320	rs1054442	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.12	ENSG00000258283	rs1054442-A	NR	3E-15		0.024262052	[0.018-0.03] unit decrease	Affymetrix [NR]	N
961	chr12	49389319	49389320	rs1054442	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	12q13.12	ENSG00000258283	rs1054442-?	NR	9E-10		6.125	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
961	chr12	49389319	49389320	rs1054442	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	12q13.12	ENSG00000258283	rs1054442-?	NR	3E-8		5.516	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
961	chr12	49389319	49389320	rs1054442	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	12q13.12	DDN	rs1054442-A	0.62	1E-8		1.13	[1.09-1.17]	Affymetrix, Illumina [9692718] (imputed)	N
961	chr12	49389475	49389476	rs3741619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	12q13.12		rs3741619-A	NR	4E-11		0.0785	[0.055-0.102] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
961	chr12	49390676	49390677	rs10783299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q13.12	Intergenic	rs10783299-T	0.6162	5E-11	(MTAG)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
961	chr12	49398861	49398862	rs2293445	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.12	Intergenic	rs2293445-A	0.3833	9E-15	(MTAG)	0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.12	NR	rs1126930-C	NR	2E-15		0.0529	[0.04-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.12	PRKAG1	rs1126930-C	0.035481	5E-9		0.03508072	[0.023-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr12	49399131	49399132	rs1126930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs1126930-G	0.966356	5E-10				Affymetrix, Illumina [22063850] (imputed)	N
961	chr12	49399131	49399132	rs1126930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q13.12	NR	rs1126930-G	0.96499	9E-13		0.036562	[0.027-0.047] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
961	chr12	49399131	49399132	rs1126930	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q13.12	PRKAG1	rs1126930-G	0.964697	9E-9		0.0213839	[0.014-0.029] unit decrease	Affymetrix [12370749]	N
961	chr12	49399131	49399132	rs1126930	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.12	NR	rs1126930-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs1126930-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.12		rs1126930-?	NR	8E-12				NR [~ 8900000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.12		rs1126930-?	NR	1E-11				NR [~ 8900000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.12	PRKAG1	rs1126930-C	0.0342	3E-12		0.6829	[0.49-0.87] mmHg increase	Affymetrix [NR] (imputed)	N
961	chr12	49399131	49399132	rs1126930	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q13.12	PRKAG1	rs1126930-C	0.0326	3E-11		0.0368	[0.026-0.048] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
961	chr12	49399131	49399132	rs1126930	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q13.12	PRKAG1	rs1126930-C	0.0322	4E-12		0.034	[0.024-0.044] unit increase	Illumina [246328]	N
961	chr12	49399131	49399132	rs1126930	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.12	PRKAG1	rs1126930-C	0.034	4E-10		0.8123	[0.56-1.07] mmHg increase	Illumina [242296]	N
961	chr12	49399131	49399132	rs1126930	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.12	PRKAG1	rs1126930-C	0.0341	3E-8		0.5046	[0.33-0.68] mmHg increase	Illumina [242296]	N
961	chr12	49402298	49402299	rs1138908	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q13.12	NR	rs1138908-C	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
961	chr12	49402561	49402562	rs80257979	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs80257979-T	0.9677	3E-10		0.0252	[0.017-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
961	chr12	49407907	49407908	rs10783300	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	12q13.12		rs10783300-?	NR	2E-11				NR [7857346] (imputed)	N
961	chr12	49408439	49408440	rs2117029	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.12	RP11-386G11.5	rs2117029-A	NR	1E-13		0.02211642	[0.016-0.028] unit decrease	Affymetrix [NR]	N
961	chr12	49413485	49413486	rs7975791	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q13.12	KMT2D	rs7975791-T	0.0384	5E-9		1.0526386		Affymetrix [11880941] (imputed)	N
961	chr12	49413485	49413486	rs7975791	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	KMT2D	rs7975791-C	0.95981	3E-10		0.0301903	[0.021-0.04] unit increase	NR [13737936] (imputed)	N
962	chr12	49416943	49416944	rs10875912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q13.12		rs10875912-?	NR	6E-17				NR [~ 8900000] (imputed)	N
962	chr12	49416943	49416944	rs10875912	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	12q13.12	MLL2	rs10875912-T	NR	8E-8	(Cases)	0.09	[0.057-0.123] unit decrease	Illumina [6900000] (imputed)	N
962	chr12	49419676	49419677	rs11168827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q13.12		rs11168827-C	NR	3E-11		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
962	chr12	49422093	49422094	rs10875914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q13.12	Intergenic	rs10875914-A	0.5993	3E-16		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
962	chr12	49422093	49422094	rs10875914	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.12	KMT2D	rs10875914-A	NR	4E-11		6.59	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
962	chr12	49422093	49422094	rs10875914	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.12	KMT2D	rs10875914-A	NR	5E-14		0.0224051	[0.017-0.028] unit decrease	Affymetrix [NR]	N
962	chr12	49422093	49422094	rs10875914	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	12q13.12	DDN, LOC100652964, MLL2, RHEBL1	rs10875914-G	NR	6E-8		1.11	[1.07-1.15]	Illumina [at least 6195093] (imputed)	N
962	chr12	49424615	49424616	rs11614738	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	12q13.12	KMT2D	rs11614738-?		9E-6	(African American)	0.2097678	[0.12-0.3] unit increase	Illumina [13620258] (imputed)	N
962	chr12	49430093	49430094	rs10875915	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q13.12	NR	rs10875915-T	NR	1E-11		6.808	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
962	chr12	49457634	49457635	rs11168839	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q13.12	RHEBL1	rs11168839-?	NR	9E-9		0.010043	[0.0066-0.0135] unit increase	Affymetrix [805426] (imputed)	N
962	chr12	49464448	49464449	rs7969091	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	12q13.12		rs7969091-?	NR	2E-9		0.0212	NR unit increase	NR [5637374] (imputed)	N
962	chr12	49464448	49464449	rs7969091	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	12q13.12	RHEBL1	rs7969091-A	NR	3E-8		0.932	[0.909-0.956]	Illumina [3742365] (imputed)	N
962	chr12	49466993	49466994	rs10459221	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	12q13.12	NR	rs10459221-?	NR	2E-8		1.1		Affymetrix, Illumina [8837380] (imputed)	N
962	chr12	49474231	49474232	rs7959831	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q13.12	NR	rs7959831-T	NR	3E-8		5.521	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
962	chr12	49474488	49474489	rs141500328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs141500328-?	NR	3E-10				NR [~ 8900000] (imputed)	N
962	chr12	49474604	49474605	rs12821008	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.12	DHH	rs12821008-T	0.39	1E-15		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
962	chr12	49477516	49477517	rs7314975	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	12q13.12	NR	rs7314975-A	0.427	5E-7		1.08101		NR [9372253] (imputed)	N
962	chr12	49478657	49478658	rs6580698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs6580698-T	0.5624	1E-19	(conditional-joint)	0.0129	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
962	chr12	49485372	49485373	rs11168854	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	DHH	rs11168854-G	0.385	2E-6		0.015	[0.0091-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
962	chr12	49485372	49485373	rs11168854	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	DHH	rs11168854-G	0.375	1E-6	(EA)	0.016	[0.0096-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
962	chr12	49509261	49509262	rs7958241	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q13.12	LMBR1L	rs7958241-A	0.656021	9E-19		0.0130618	[0.01-0.016] unit decrease	Affymetrix [12370749]	N
962	chr12	49516945	49516946	rs10783306	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	12q13.12	TUBA1B	rs10783306-C	0.33	1E-11				NR [9312144] (imputed)	N
962	chr12	49522604	49522605	rs1057548	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q13.12	DHH, LMBR1L, TUBA1B, TUBA1A, TUBA1C	rs1057548-?		8E-10				NR [7428630] (imputed)	N
962	chr12	49530131	49530135	rs35554786	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	12q13.12	TUBA1B	rs35554786-D	0.24	1E-9		0.93389755	[NR]	Illumina [12493443] (imputed)	N
962	chr12	49539891	49539892	rs11168884	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	12q13.12	TUBA1B	rs11168884-T	0.343	2E-10		0.98080784	[NR]	Illumina [12493444] (imputed)	N
963	chr12	49556887	49556888	rs58336603	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q13.12	NR	rs58336603-T	0.3395	3E-13				NR [9056863] (imputed)	N
963	chr12	49568998	49568999	rs10875930	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.12		rs10875930-G	0.34	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
963	chr12	49582691	49582692	rs1039225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.12		rs1039225-G	0.33	6E-30		11.38	z score increase	Affymetrix [9061022] (imputed)	N
963	chr12	49582691	49582692	rs1039225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.12		rs1039225-G	0.33	2E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
963	chr12	49586489	49586490	rs11168910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.12	NR	rs11168910-T	0.3334	4E-14				NR [9056863] (imputed)	N
963	chr12	49586675	49586676	rs55770587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.12	NR	rs55770587-T	NR	3E-13		0.0448	[0.033-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
963	chr12	49602204	49602205	rs10875934	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	12q13.12	TUBA1A	rs10875934-G	0.2133	3E-6		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
963	chr12	49611303	49611304	rs74484931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.12	TUBA1C	rs74484931-G	0.034612	2E-9		0.036524575	[0.025-0.048] unit increase	Affymetrix [93095623] (imputed)	N
963	chr12	49611303	49611304	rs74484931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs74484931-G	0.0332039	3E-10				Affymetrix, Illumina [20825802] (imputed)	N
963	chr12	49611303	49611304	rs74484931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.12	NR	rs74484931-G	0.03449	8E-12		0.036581	[0.026-0.047] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
963	chr12	49620554	49620555	rs137985742	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	12q13.12	NR	rs137985742-C	0.3072	4E-6		0.1529	[0.088-0.218] unit increase	Illumina [10677593] (imputed)	N
963	chr12	49628345	49628346	rs147554036	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	12q13.12		rs147554036-A	NR	6E-6		1.4455	[0.83-2.06] unit increase	Illumina [NR] (imputed)	N
963	chr12	49645239	49645240	rs11168936	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q13.12	NR	rs11168936-?	NR	5E-7		0.0089327	[0.0054-0.0124] unit increase	Affymetrix [805426] (imputed)	N
963	chr12	49645239	49645240	rs11168936	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	12q13.12	TUBA1C	rs11168936-C	NR	9E-7	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
963	chr12	49652730	49652731	rs113543437	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.12		rs113543437-G	0.926	9E-20				Affymetrix [10369434] (imputed)	N
963	chr12	49652730	49652731	rs113543437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.12	TUBA1C, RP11-977B10.2	rs113543437-A	0.072993	4E-26		0.045539055	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr12	49652730	49652731	rs113543437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.12	TUBA1C, RP11-977B10.2	rs113543437-A	0.073003	2E-117		0.09750721	[0.089-0.106] unit increase	Affymetrix [93095623] (imputed)	N
963	chr12	49652730	49652731	rs113543437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.12	NR	rs113543437-A	0.073801	6E-33		0.041987	[0.035-0.049] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
963	chr12	49652730	49652731	rs113543437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs113543437-G	0.927714	4E-131				Affymetrix, Illumina [17210439] (imputed)	N
963	chr12	49652730	49652731	rs113543437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.12	NR	rs113543437-G	0.926793	2E-135		0.08998	[0.083-0.097] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
963	chr12	49652730	49652731	rs113543437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs113543437-?	NR	2E-12				NR [~ 8900000] (imputed)	N
963	chr12	49655947	49655948	rs117557198	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs117557198-A	0.9324	2E-10		0.0769	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
963	chr12	49655947	49655948	rs117557198	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs117557198-A	0.9302	4E-12	(European)	0.0887	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
963	chr12	49661714	49661715	rs11168951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.12	Intergenic	rs11168951-T	0.0983	1E-9	(MTAG)	0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
963	chr12	49661714	49661715	rs11168951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q13.12	Intergenic	rs11168951-T	0.0981	4E-9	(MTAG)	0.0228	[0.015-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
963	chr12	49661714	49661715	rs11168951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q13.12	Intergenic	rs11168951-T	0.0981	4E-8		0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
963	chr12	49661714	49661715	rs11168951	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.12	ENSG00000258232	rs11168951-T	NR	3E-8		5.565	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
963	chr12	49661714	49661715	rs11168951	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.12	ENSG00000258232	rs11168951-T	NR	1E-8		0.02875135	[0.019-0.039] unit increase	Affymetrix [NR]	N
963	chr12	49662390	49662391	rs7958679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.12	TUBA1C, RP11-161H23.5	rs7958679-T	0.073175	1E-287		0.15746517	[0.15-0.17] unit increase	Affymetrix [93095623] (imputed)	N
963	chr12	49662390	49662391	rs7958679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs7958679-T	0.0729469	2E-29				Affymetrix, Illumina [24588908] (imputed)	N
963	chr12	49662390	49662391	rs7958679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12q13.12	TUBA1C, RP11-161H23.5	rs7958679-T	0.0742	3E-98		0.144808	[0.13-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
963	chr12	49671658	49671659	rs80012730	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.12	RP11-161H23.5	rs80012730-C	0.0745	4E-10		0.04380153	[0.03-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
963	chr12	49671658	49671659	rs80012730	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q13.12	RP11-161H23.5	rs80012730-C	0.0744	1E-46		0.0995504	[0.086-0.113] unit increase	Affymetrix [~ 2500000] (imputed)	N
963	chr12	49672713	49672714	rs56222401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	12q13.12		rs56222401-G	NR	2E-10		0.0859	[0.059-0.112] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
963	chr12	49672713	49672714	rs56222401	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q13.12	NR	rs56222401-G	NR	6E-24		1.078	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
963	chr12	49676009	49676010	rs10875943	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	12q13.12	NR	rs10875943-C	NR	8E-10		1.1	NR	Affymetrix [at least 232408] (imputed)	N
963	chr12	49676009	49676010	rs10875943	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	12q13.12		rs10875943-C	NR	1E-10		1.1084018	NR	Affymetrix [7846216] (imputed)	N
963	chr12	49676009	49676010	rs10875943	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q13.12	NR	rs10875943-C	0.29	2E-15		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
963	chr12	49676009	49676010	rs10875943	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	12q13.12	NR	rs10875943-C	0.29	7E-8		1.12	[1.08-1.17]	Affymetrix [up to 19977088] (imputed)	N
963	chr12	49676009	49676010	rs10875943	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	12q13.12	NR	rs10875943-C	0.29	2E-6	(European)	1.12	[1.07-1.18]	Affymetrix [up to 19977088] (imputed)	N
963	chr12	49676009	49676010	rs10875943	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	12q13.12	PRPH	rs10875943-C	0.31	7E-12		1.07	[1.04-1.10]	NR [2600000] (imputed)	N
964	chr12	49691056	49691057	rs73112142	30992453	Bjornsdottir G	2019-04-16	Nat Commun	A PRPH splice-donor variant associates with reduced sural nerve amplitude and risk of peripheral neuropathy.	Sural nerve amplitude potential	6,879 Icelandic ancestry individuals	NA	12q13.12	PRPH	rs73112142-A	NR	1E-11		0.49	[0.34-0.63] SD units decrease	Illumina [at least 37600000] (imputed)	N
964	chr12	49698893	49698894	rs12322335	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	12q13.12		rs12322335-?	NR	1E-8		1.13409	[1.09-1.18]	NR [680312]	N
964	chr12	49729636	49729637	rs117895796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs117895796-T	0.0143	2E-8		0.0362	[0.024-0.049] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
964	chr12	49735339	49735340	rs11168980	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	12q13.12	NR	rs11168980-?	NR	7E-13		0.29	[0.19-0.39] unit increase	Illumina [at least 830937] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	3E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	2E-7				Affymetrix, Illumina [NR] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	4E-8		0.017	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
964	chr12	49755161	49755162	rs4898521	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q13.12	DNAJC22, SPATS2	rs4898521-A	NR	2E-8	(EA)	0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
965	chr12	49816707	49816708	rs12315033	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q13.12	SPATS2	rs12315033-T		3E-9		0.947	[NR]	Affymetrix [up to 79000000] (imputed)	N
965	chr12	49817632	49817633	rs118166638	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.12	NR	rs118166638-?	NR	9E-6		4.444	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
965	chr12	49835244	49835245	rs1270901	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs1270901-A	0.9548	9E-9		0.0905	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
965	chr12	49835244	49835245	rs1270901	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.12	NR	rs1270901-A	0.9535	2E-9	(European)	0.1008	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
965	chr12	49886784	49886785	rs11615710	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q13.12	NR	rs11615710-G	0.207	2E-9		0.00980909	[0.0066-0.013] unit decrease	NR [~ 9732723] (imputed)	N
965	chr12	49931729	49931730	rs11613183	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	12q13.12	NR	rs11613183-C	NR	2E-8		0.02542	NR unit increase	NR [7259579]	N
966	chr12	49943121	49943122	rs933738	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	12q13.12	KCNH3	rs933738-A	0.816	1E-8		0.0698	[0.046-0.094] unit decrease	NR [9744772] (imputed)	N
966	chr12	49943121	49943122	rs933738	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	19,099 ADHD cases, 4,819 Tourette's syndrome cases	NA	12q13.12		rs933738-?	NR	3E-8		0.0187	NR unit decrease	NR [5616739] (imputed)	N
966	chr12	49943121	49943122	rs933738	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q13.12	NR	rs933738-G	0.181	6E-14		0.0105686	[0.0078-0.0133] unit decrease	NR [9732723] (imputed)	N
966	chr12	49943121	49943122	rs933738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q13.12		rs933738-?	NR	2E-7				NR [~ 8900000] (imputed)	N
966	chr12	49943121	49943122	rs933738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.12	Intergenic	rs933738-A	0.8192	6E-9	(MTAG)	0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
966	chr12	49943121	49943122	rs933738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs933738-A	0.8193	2E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
966	chr12	49943121	49943122	rs933738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.12	Intergenic	rs933738-A	0.8193	4E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
966	chr12	49943121	49943122	rs933738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q13.12	Intergenic	rs933738-A	0.826	4E-8	(MTAG)	0.0167	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
966	chr12	49947951	49947952	rs17123764	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.12	KCNH3	rs17123764-T	NR	7E-9		0.03209259	[0.021-0.043] unit increase	Affymetrix [NR]	N
966	chr12	49952393	49952394	rs13906	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q13.12	NR	rs13906-T	0.109	2E-9		0.024529729	[0.017-0.033] unit decrease	NR [~ 10000000] (imputed)	N
966	chr12	49979412	49979413	rs17123808	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q13.12		rs17123808-C	0.904	4E-11		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
966	chr12	49981721	49981722	rs7977389	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	FAM186B	rs7977389-T		3E-10		0.381	unit increase	Affymetrix [at least 2696785] (imputed)	N
966	chr12	49981721	49981722	rs7977389	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	FAM186B	rs7977389-T		4E-8		0.312	unit increase	Affymetrix [at least 2696785] (imputed)	N
966	chr12	49981721	49981722	rs7977389	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	FAM186B	rs7977389-T		2E-6	(EA)	0.308	unit increase	Affymetrix [at least 2696785] (imputed)	N
966	chr12	49981721	49981722	rs7977389	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	FAM186B	rs7977389-T		1E-11		0.274	unit increase	Affymetrix [at least 2696785] (imputed)	N
966	chr12	49987928	49987929	rs7965658	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	12q13.12	NR	rs7965658-G		7E-6				Illumina [458525]	N
966	chr12	49989104	49989105	rs60415769	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	12q13.12	NR	rs60415769-?	0.07961	7E-6		0.199955	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
966	chr12	50009168	50009169	rs117124817	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q13.12	PRPF40B	rs117124817-?	NR	9E-9		0.037650615	[0.025-0.05] unit decrease	NR [7306098]	N
966	chr12	50015941	50015942	rs74086911	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	12q13.12		rs74086911-G	0.925	2E-8		0.021	[0.013-0.029] unit increase	Affymetrix [up to 90000000] (imputed)	N
967	chr12	50112862	50112863	rs113814752	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q13.12	NR	rs113814752-T	0.01568	2E-8	(ACSS3)	0.1793	NR unit increase	Illumina [1671387] (imputed)	N
967	chr12	50120392	50120393	rs181908897	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs181908897-?	NR	4E-33		0.211882	[0.18-0.25] unit increase	Affymetrix [20259828] (imputed)	N
967	chr12	50138464	50138465	rs56737983	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	12q13.12	NR	rs56737983-?	0.07415	8E-7		0.227101	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
967	chr12	50150265	50150266	rs7487854	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.12	TMBIM6	rs7487854-T	NR	4E-8		5.476	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
967	chr12	50155399	50155400	rs6580721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.12		rs6580721-?	NR	1E-9				NR [~ 8900000] (imputed)	N
967	chr12	50175379	50175380	rs2720293	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	12q13.12	NCKAP5L	rs2720293-A	0.7289	1E-6		0.0689	[0.041-0.097] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
967	chr12	50175379	50175380	rs2720293	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12q13.12	NCKAP5L	rs2720293-A	0.7286	1E-6		0.066	[0.04-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50206722	50206723	rs10875969	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	12q13.12	NCKAP5L	rs10875969-A	0.4238	8E-6		0.505	[0.28-0.73] unit increase	Illumina [500508]	N
968	chr12	50215904	50215905	rs11169166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs11169166-?	NR	7E-9				NR [~ 8900000] (imputed)	N
968	chr12	50223578	50223579	rs4898532	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	12q13.12	NR	rs4898532-T	0.49343	1E-6		2.198853	[1.31-3.09] unit increase	Illumina [9469131] (imputed)	N
968	chr12	50226466	50226467	rs10875976	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	12q13.12	LOC144233	rs10875976-A	0.49	2E-10	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
968	chr12	50229508	50229509	rs2045094	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	12q13.12	NR	rs2045094-G	0.1473	4E-6		1.207	[0.69-1.73] unit decrease	Illumina [at least 567677] (imputed)	N
968	chr12	50247467	50247468	rs7138803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q13.12	NR	rs7138803-A	NR	8E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	12q13.12	BCDIN3D	rs7138803-A	0.37	7E-20		0.073	[0.057-0.089] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
968	chr12	50247467	50247468	rs7138803	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	12q13.12	BCDIN3D	rs7138803-A	0.368675	4E-8		0.0369574	[0.024-0.05] unit increase	Affymetrix [9463307] (imputed)	N
968	chr12	50247467	50247468	rs7138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q13.12	NA	rs7138803-A	0.3842	1E-12		0.0125	[0.009-0.016] unit increase	NR [~ 27400000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	12q13.12	NR	rs7138803-A	0.3842	1E-12		0.0125	[0.009-0.016] unit increase	NR [~ 27400000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q13.12	NA	rs7138803-A	0.387	3E-71		0.0297	[0.026-0.033] unit increase	NR [~ 27400000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q13.12	NA	rs7138803-A	0.387	3E-71		0.0297	[0.026-0.033] unit increase	NR [~ 27400000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q13.12	NR	rs7138803-G	NR	6E-27		0.027	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.34	2E-21		0.023	[0.019-0.027] unit increase	Illumina [6108953] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3879	8E-6	(EA)	0.0362	[0.02-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.379	2E-6		0.0369	[0.022-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3856	1E-10	(EA)	0.0275	[0.019-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3842	1E-8	(EA,women)	0.0311	[0.021-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3764	2E-11		0.0278	[0.02-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3712	1E-9	(women)	0.0315	[0.021-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	6E-14	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	4E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	4E-11	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	2E-11	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	1E-15				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3856	9E-15	(EA)	0.0299	[0.022-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3856	2E-11	(EA, women)	0.0334	[0.024-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3764	6E-12	(women)	0.0325	[0.023-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3764	5E-16		0.0298	[0.023-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.3764	1E-6	(men)	0.0258	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	6E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	3E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	3E-10	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	1E-6		0.0364	[0.022-0.051] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	4E-6	(men)	0.0257	[0.015-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	4E-11		0.0269	[0.019-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	3E-7	(women)	0.0286	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	7E-10	(women)	0.0301	[0.02-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	4E-16		0.029	[0.022-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.12	FAIM2	rs7138803-A	0.3705	3E-8	(men)	0.027	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	12q13.12	BCDIN3D	rs7138803-A	NR	2E-15	(additive model)	0.034	[0.026-0.042] unit increase	NR [9288881] (imputed)	N
968	chr12	50247467	50247468	rs7138803	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	12q13.12	NR	rs7138803-A	NR	5E-18				Affymetrix, Illumina [2499691] (imputed)	N
968	chr12	50247467	50247468	rs7138803	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q13.12	NR	rs7138803-A	0.386681641023647	2E-31		0.0327098	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	BCDIN3D	rs7138803-A	0.385	6E-11	(EA, men)	0.027	[0.019-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr12	50247467	50247468	rs7138803	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	BCDIN3D	rs7138803-A	0.384	8E-24	(EA)	0.032	[0.025-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr12	50247467	50247468	rs7138803	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	BCDIN3D	rs7138803-A	0.384	2E-17	(EA, women)	0.035	[0.027-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr12	50247467	50247468	rs7138803	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q13.12	BCDIN3D	rs7138803-A	0.379	5E-26		0.032	[0.026-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
968	chr12	50247467	50247468	rs7138803	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.12	BCDIN3D	rs7138803-A	0.3848	9E-12	(EA, women)	0.0309	[0.022-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.12	BCDIN3D	rs7138803-A	0.3848	8E-7	(EA, men)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.12	BCDIN3D	rs7138803-A	0.3848	2E-15	(EA)	0.0282	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.12	FAIM2	rs7138803-A	0.3851	8E-13	(EA,women)	0.0344	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.12	FAIM2	rs7138803-A	0.3851	2E-15	(EA)	0.0292	[0.022-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
968	chr12	50247467	50247468	rs7138803	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	12q13.12	BCDIN3D	rs7138803-G	0.62	2E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
968	chr12	50247467	50247468	rs7138803	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	12q13.12	LOC144233	rs7138803-A	0.38	1E-20	(Obesity class I)	1.09	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	12q13.12	LOC144233	rs7138803-A	0.38	1E-16	(Obesity class II)	1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	12q13.12	LOC144233	rs7138803-A	0.38	2E-9		1.13	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	12q13.12	FAIM2	rs7138803-A	0.38	2E-17		0.12	[0.08-0.16] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
968	chr12	50247467	50247468	rs7138803	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	12q13.12	BCDIN3D, FAIM2	rs7138803-?	NR	8E-7				Affymetrix, Illumina [up to 512349]	N
968	chr12	50247467	50247468	rs7138803	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.37	2E-7		3.27	[2.05-4.49] percentage SD increase	Illumina [305846]	N
968	chr12	50247467	50247468	rs7138803	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	12q13.12	BCDIN3D, FAIM2	rs7138803-A	0.37	1E-7		3.28	[2.06-4.50] % SD increase	Illumina [305846]	N
968	chr12	50250110	50250111	rs7306275	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q13.12	NR	rs7306275-A	0.39	2E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
968	chr12	50250110	50250111	rs7306275	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	intergenic	rs7306275-A	0.363614	4E-7		0.009982	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
968	chr12	50250110	50250111	rs7306275	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	intergenic	rs7306275-A	0.363614	3E-7	(females)	0.01477	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
968	chr12	50250110	50250111	rs7306275	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	intergenic	rs7306275-A	0.363614	3E-12	(females)	0.01882	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
968	chr12	50250110	50250111	rs7306275	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	intergenic	rs7306275-A	0.363614	2E-7	(males)	0.01354	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
968	chr12	50250110	50250111	rs7306275	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	intergenic	rs7306275-A	0.363614	1E-14		0.01631	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
968	chr12	50250110	50250111	rs7306275	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	12q13.12	BCDIN3D, FAIM2	rs7306275-?	NR	1E-8		0.027	[0.018-0.036] unit increase	Illumina [12039492]	N
968	chr12	50251550	50251551	rs2675568	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs2675568-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
968	chr12	50256062	50256063	rs12367809	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12q13.12	BCDIN3D	rs12367809-T	0.3684	1E-11		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
968	chr12	50257402	50257403	rs73114181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs73114181-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
968	chr12	50260824	50260825	rs1044677	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	12q13.12	FAIM2	rs1044677-T	0.3407	6E-7		0.065	[0.04-0.09] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50261808	50261809	rs3205718	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q13.12	FAIM2	rs3205718-T	0.287	5E-10	(Japanese)	0.023	[0.015-0.031] unit increase	Illumina [6108953] (imputed)	N
968	chr12	50261808	50261809	rs3205718	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	12q13.12	FAIM2	rs3205718-?	NR	1E-7		0.067	[0.042-0.092] unit increase	Illumina [12039487] (imputed)	N
968	chr12	50263147	50263148	rs7132908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q13.12		rs7132908-A	NR	2E-46		0.0247	[0.021-0.028] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
968	chr12	50263147	50263148	rs7132908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q13.12		rs7132908-A	0.287873	3E-10		0.0188659	[0.013-0.025] unit increase	Illumina [13479924] (imputed)	N
968	chr12	50263147	50263148	rs7132908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q13.12		rs7132908-A	NR	3E-9		0.0394	[0.026-0.052] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
968	chr12	50263147	50263148	rs7132908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q13.12		rs7132908-A	NR	1E-39		0.0261	[0.022-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
968	chr12	50263147	50263148	rs7132908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	12q13.12		rs7132908-A	0.287946	1E-8		0.0199911	[0.013-0.027] unit increase	Illumina [13479178] (imputed)	N
968	chr12	50263147	50263148	rs7132908	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q13.12		rs7132908-A	0.38	5E-33				NR [NR] (imputed)	N
968	chr12	50263147	50263148	rs7132908	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	12q13.12		rs7132908-A	0.38	9E-8		0.01	mmol/L decrease	NR [NR] (imputed)	N
968	chr12	50263147	50263148	rs7132908	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q13.12		rs7132908-A	0.38	1E-36		0.019	% increase	NR [NR] (imputed)	N
968	chr12	50263147	50263148	rs7132908	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	12q13.12	NR	rs7132908-?	NR	9E-13		11.3	NR z score increase	Affymetrix, Illumina [10031233] (imputed)	N
968	chr12	50263147	50263148	rs7132908	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q13.12	NR	rs7132908-G	0.6102	1E-12		0.033	[0.024-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
968	chr12	50263147	50263148	rs7132908	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q13.12	NR	rs7132908-G	0.6431	7E-14		0.0297	[0.022-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
968	chr12	50263147	50263148	rs7132908	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	12q13.12	NR	rs7132908-A	0.367	5E-9		0.010468613	[0.007-0.014] unit decrease	Affymetrix [NR] (imputed)	N
968	chr12	50263147	50263148	rs7132908	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q13.12	FAIM2	rs7132908-G	0.615537	2E-104		0.0312648	[0.028-0.034] unit decrease	Affymetrix [12370749]	N
968	chr12	50263147	50263148	rs7132908	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q13.12	FAIM2	rs7132908-G	0.615537	8E-40		0.0186209	[0.016-0.021] unit decrease	Affymetrix [12370749]	N
968	chr12	50263147	50263148	rs7132908	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs7132908-?	NR	3E-49				Affymetrix [~ 8270000] (imputed)	N
968	chr12	50263147	50263148	rs7132908	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	12q13.12	NR	rs7132908-A	NR	6E-15	(EA)	0.1546	[0.12-0.19] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
968	chr12	50263147	50263148	rs7132908	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q13.12	NR	rs7132908-A	0.3837	1E-23		0.025531303	[0.021-0.031] unit increase	Affymetrix [10549349] (imputed)	N
968	chr12	50263147	50263148	rs7132908	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	12q13.12	BCDIN3D	rs7132908-?	NR	4E-11				NR [5554549] (imputed)	N
968	chr12	50263147	50263148	rs7132908	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	12q13.12	BCDIN3D	rs7132908-?	NR	4E-32				NR [5554549] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	12q13.12	FAIM2	rs7132908-A	0.378173	2E-31		1.17	[1.14-1.21]	Illumina [~ 41266535] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	12q13.12	FAIM2	rs7132908-A	0.362678	2E-16		1.2	[1.15-1.26]	Illumina [41266535] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	12q13.12	FAIM2	rs7132908-A	0.3842	4E-8		0.012576572	[0.0081-0.0171] unit decrease	Affymetrix [11514936] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.12		rs7132908-?	NR	5E-50				NR [~ 8900000] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.12	NR	rs7132908-?	NR	3E-9		0.13432	[0.09-0.179] unit increase	Affymetrix [7794483] (imputed)	N
968	chr12	50263147	50263148	rs7132908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q13.12	NA	rs7132908-A	0.3895	5E-64		0.0305	[0.027-0.034] unit increase	NR [~ 27400000] (imputed)	N
968	chr12	50263147	50263148	rs7132908	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.12	FAIM2	rs7132908-A	0.3797	2E-9		0.0407	[0.027-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50263147	50263148	rs7132908	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.12	FAIM2	rs7132908-A	0.3797	2E-9		0.0407	[0.027-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50263147	50263148	rs7132908	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	12q13.12	FAIM2	rs7132908-A	0.39	2E-18		0.066	[0.05-0.082] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
968	chr12	50266163	50266164	rs706798	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12q13.12	FAIM2	rs706798-A	0.6511	2E-6		0.0583	[0.034-0.082] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50267334	50267335	rs836968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q13.12		rs836968-T	NR	4E-13		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
968	chr12	50267334	50267335	rs836968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q13.12		rs836968-T	NR	2E-11		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
968	chr12	50267334	50267335	rs836968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q13.12		rs836968-T	NR	2E-17		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
968	chr12	50267334	50267335	rs836968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q13.12	NR	rs836968-T	NR	6E-14		0.0204	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
968	chr12	50267334	50267335	rs836968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.12	NR	rs836968-T	NR	4E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr12	50267334	50267335	rs836968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q13.12	NR	rs836968-T	NR	4E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
968	chr12	50267334	50267335	rs836968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q13.12	NR	rs836968-T	NR	2E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr12	50267334	50267335	rs836968	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q13.12	NR	rs836968-T	0.27	5E-14		0.0156	[0.011-0.02] unit decrease	NR [NR]	N
968	chr12	50267334	50267335	rs836968	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q13.12	FAIM2	rs836968-T	0.3706	5E-9		0.0197	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
968	chr12	50267334	50267335	rs836968	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q13.12	FAIM2	rs836968-T	0.2736	3E-6		0.020569	[0.012-0.029] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
968	chr12	50267334	50267335	rs836968	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q13.12	NR	rs836968-T	0.3793	9E-6	(women)	0.0215	[0.012-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
968	chr12	50267334	50267335	rs836968	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q13.12	FAIM2	rs836968-T	0.3856	2E-9		0.0046	[0.003-0.0062] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
968	chr12	50269862	50269863	rs77978149	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q13.12	FAIM2	rs77978149-T	0.09	6E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
968	chr12	50270363	50270364	rs12146733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q13.12	FAIM2	rs12146733-C	0.352	2E-13		0.0503	[0.037-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50270363	50270364	rs12146733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q13.12	FAIM2	rs12146733-C	0.3552	2E-8		0.0482	[0.031-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50270363	50270364	rs12146733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q13.12	FAIM2	rs12146733-C	0.352	2E-12		0.0484	[0.035-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
968	chr12	50271044	50271045	rs1248264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs1248264-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
968	chr12	50291734	50291735	rs297937	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.12	NR	rs297937-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
968	chr12	50305589	50305590	rs17124115	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	12q13.12	RP11-70F11.11	rs17124115-?	NR	7E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
968	chr12	50319085	50319086	rs297941	22889921	Stewart SE	2012-08-14	Mol Psychiatry	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 299 European ancestry trios, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 101 Hispanic and unknown ancestry trios	NA	12q13.12	FAIM2, AQP2	rs297941-?	NR	5E-7		1.23	NR	Illumina [479067]	N
969	chr12	50345670	50345671	rs11169225	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	12q13.12	AQP5, AQP2	rs11169225-A	0.1924	5E-10		1.04	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
969	chr12	50345670	50345671	rs11169225	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q13.12	AQP2	rs11169225-A	0.18	1E-11		1.045	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
969	chr12	50354436	50354437	rs3759129	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q13.12	AQP5	rs3759129-C	0.19	5E-8				NR [> 9500000] (imputed)	N
969	chr12	50384348	50384349	rs2292721	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	12q13.12	NR	rs2292721-?		3E-6				Illumina [892589]	N
970	chr12	50480284	50480285	rs57224706	28358823	Kim SK	2017-03-30	PLoS One	Genome-wide association screens for Achilles tendon and ACL tears and tendinopathy.	Achilles tendinopathy	4,258 European ancestry cases, 413 Latin-American cases, 268 East Asian ancestry cases, 192 African American cases, 17 South East Asian ancestry cases, 79,006 European ancestry controls, 8,147 Latin-American controls, 7,250 East Asian ancestry controls, 2,969 African American controls, 459 South East Asian ancestry controls		12q13.12	NR	rs57224706-G	NR	6E-7		1.36	[1.24-1.48]	Affymetrix [10551193] (imputed)	N
970	chr12	50503081	50503082	rs836179	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q13.12	GPD1	rs836179-A	0.630603	1E-11		0.00980524	[0.007-0.0126] unit increase	Affymetrix [12370749]	N
970	chr12	50503268	50503269	rs836180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q13.12	GPD1	rs836180-T	NR	2E-10		0.0202141	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
970	chr12	50507178	50507179	rs7964698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.12		rs7964698-?	NR	2E-13				NR [~ 8900000] (imputed)	N
970	chr12	50509936	50509937	rs10747570	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.12	C12orf62	rs10747570-A	0.3506	3E-17		0.2932	[0.23-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	COX14	rs10747570-A		3E-7	(EA)	0.313	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	COX14	rs10747570-A		2E-6		0.275	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	COX14	rs10747570-A		1E-10		0.256	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	COX14	rs10747570-A		7E-10	(EA)	0.245	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.12	COX14	rs10747570-A		2E-9		0.225	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50509936	50509937	rs10747570	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	COX14	rs10747570-A		4E-14		0.184	unit increase	Affymetrix [at least 2696785] (imputed)	N
970	chr12	50516747	50516748	rs10735823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q13.12		rs10735823-C	NR	1E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
970	chr12	50537814	50537815	rs7302981	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q13.12	CERS5	rs7302981-G	0.619	1E-7	(EA, initial)	0.385	[0.24-0.53] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
970	chr12	50537814	50537815	rs7302981	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	12q13.12	CERS5	rs7302981-A	0.338	9E-15		0.37	[0.27-0.47] unit increase	Illumina [247039]	N
970	chr12	50537814	50537815	rs7302981	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q13.12	CERS5	rs7302981-A	0.338244994685594	1E-7		0.25883183	[0.16-0.35] unit increase	Illumina [247039]	N
970	chr12	50537814	50537815	rs7302981	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Hypertension	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	12q13.12	CERS5	rs7302981-A	0.341	5E-10		6.226642	z score increase	Illumina [247039]	N
970	chr12	50537814	50537815	rs7302981	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	12q13.12	CERS5	rs7302981-A	0.338	9E-19		0.25	[0.19-0.31] unit increase	Illumina [247039]	N
970	chr12	50537814	50537815	rs7302981	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.12	CERS5	rs7302981-A	0.3632	1E-14		0.3532	[0.26-0.44] mmHg increase	Illumina [242296]	N
970	chr12	50537814	50537815	rs7302981	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.12	CERS5	rs7302981-A	0.3502	7E-10		6.17	z score increase	Illumina [242296]	N
970	chr12	50537814	50537815	rs7302981	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.12	CERS5	rs7302981-A	0.3623	3E-19		0.248	mmHg increase	Illumina [242296]	N
970	chr12	50539418	50539419	rs7138945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.12	RP4-605O3.4, CERS5	rs7138945-G	0.36595	4E-9		0.013451838	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
970	chr12	50543200	50543201	rs7294548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q13.12	RP4-605O3.4, CERS5	rs7294548-A	NR	9E-10		0.0178346	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
970	chr12	50554101	50554101	rs11442884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q13.12		rs11442884-CA	NR	2E-13		0.0183	[0.013-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
970	chr12	50554101	50554101	rs11442884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q13.12		rs11442884-CA	NR	3E-15		0.0204	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
970	chr12	50559127	50559128	rs10783340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs10783340-G	0.672797	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
970	chr12	50561997	50561998	rs11169294	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	12q13.12	CERS5	rs11169294-G	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
970	chr12	50570126	50570127	rs3184122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q13.12		rs3184122-G	NR	7E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
970	chr12	50573432	50573433	rs34245511	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	12q13.12	DIP2B, ATF1	rs34245511-C	0.346	3E-8		1.144	[NR]	Illumina [NR] (imputed)	N
970	chr12	50574310	50574311	rs4883481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.12		rs4883481-?	NR	7E-22				NR [~ 8900000] (imputed)	N
970	chr12	50576916	50576917	rs4883482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q13.12		rs4883482-?	NR	1E-10				NR [~ 8900000] (imputed)	N
970	chr12	50578704	50578705	rs11169302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs11169302-G	0.416027	2E-22				Affymetrix, Illumina [24649327] (imputed)	N
970	chr12	50578704	50578705	rs11169302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.12	NR	rs11169302-G	0.392444	9E-23		0.018563	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
970	chr12	50579397	50579398	rs12817211	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	12q13.12	LIMA1	rs12817211-C	0.767	3E-6	(opposite direction)	1.12	[1.07-1.18]	Illumina [up to 6000000] (imputed)	N
970	chr12	50581646	50581647	rs7301566	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q13.12		rs7301566-T	NR	3E-8		1.06		Illumina [NR] (imputed)	N
971	chr12	50594946	50594947	rs4459386	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q13.12	NR	rs4459386-A	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
971	chr12	50599218	50599219	rs3861100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q13.12	NR	rs3861100-G	0.347896	3E-19		0.018074	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
971	chr12	50599708	50599709	rs2302900	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.12		rs2302900-C	0.33	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
971	chr12	50599708	50599709	rs2302900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.12		rs2302900-?	NR	1E-25				NR [~ 8900000] (imputed)	N
971	chr12	50601672	50601672	rs60876815	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	12q13.12		rs60876815-?	NR	2E-8				NR [9705931] (imputed)	N
971	chr12	50610320	50610321	rs12425705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs12425705-C	0.335405	1E-16				Affymetrix, Illumina [23114412] (imputed)	N
971	chr12	50650056	50650057	rs2160994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q13.12		rs2160994-C	NR	1E-13		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
971	chr12	50650056	50650057	rs2160994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q13.12	LIMA1	rs2160994-T	0.35251	4E-17		0.0183788	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
971	chr12	50650056	50650057	rs2160994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q13.12	LIMA1	rs2160994-T	0.352574	1E-15		0.0174474	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
971	chr12	50650056	50650057	rs2160994	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q13.12	LIMA1	rs2160994-?	NR	7E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
971	chr12	50650056	50650057	rs2160994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.12		rs2160994-?	NR	1E-10				NR [~ 8900000] (imputed)	N
971	chr12	50679417	50679418	rs6580736	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	12q13.12		rs6580736-T	0.639	1E-12				Affymetrix [10369434] (imputed)	N
971	chr12	50703383	50703384	rs28849840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q13.12		rs28849840-A	NR	3E-15		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
971	chr12	50703383	50703384	rs28849840	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	12q13.12	NR	rs28849840-A	0.35	2E-9		1.08	NR	NR [8853336] (imputed)	N
971	chr12	50715251	50715252	rs9669354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q13.12	AC140061.2	rs9669354-T	NR	4E-9		0.018918	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
971	chr12	50715251	50715252	rs9669354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.12		rs9669354-?	NR	3E-23				NR [~ 8900000] (imputed)	N
972	chr12	50741461	50741462	rs71083539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q13.12	FAM186A	rs71083539-C	0.668037	2E-20		0.02211383	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr12	50751299	50751299	rs148904185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q13.12		rs148904185-AAG	NR	2E-22		0.0243	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
972	chr12	50751299	50751299	rs148904185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q13.12		rs148904185-AAG	NR	3E-20		0.0229	[0.018-0.028] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
972	chr12	50758821	50758821	rs372371648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q13.12	FAM186A	rs372371648-CA	0.455244	4E-16		0.019282188	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
972	chr12	50766784	50766785	rs12423782	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q13.12	FAM186A	rs12423782-A	0.4336	1E-8		0.0819	[0.053-0.111] unit increase	Affymetrix [~ 11900000] (imputed)	N
972	chr12	50767036	50767037	rs61926181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q13.12		rs61926181-A	NR	4E-8		0.1125	[0.073-0.152] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
972	chr12	50767036	50767037	rs61926181	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q13.12	FAM186A	rs61926181-A	0.0385937	4E-8		0.11253912	[0.072-0.153] unit decrease	Affymetrix [7288503] (imputed)	N
972	chr12	50777572	50777573	rs35031884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.12	NR	rs35031884-A	NR	5E-10		0.0196	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
973	chr12	50880421	50880422	rs11614785	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	ACCN2, ATF1, C12orf62, DIP2B, GPD1, LARP4, LASS5, LIMA1, SMARCD1	rs11614785-G	0.328617	2E-9		0.01321	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
973	chr12	50880421	50880422	rs11614785	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	ACCN2, ATF1, C12orf62, DIP2B, GPD1, LARP4, LASS5, LIMA1, SMARCD1	rs11614785-G	0.328617	1E-18	(females)	0.02629	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
973	chr12	50880421	50880422	rs11614785	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	ACCN2, ATF1, C12orf62, DIP2B, GPD1, LARP4, LASS5, LIMA1, SMARCD1	rs11614785-G	0.328617	4E-13	(females)	0.02041	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
973	chr12	50880421	50880422	rs11614785	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.12	ACCN2, ATF1, C12orf62, DIP2B, GPD1, LARP4, LASS5, LIMA1, SMARCD1	rs11614785-G	0.328617	4E-7		0.01207	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
973	chr12	50880421	50880422	rs11614785	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.12	NR	rs11614785-G	0.337933	2E-31		0.0385842	[0.032-0.045] unit decrease	NR [19129689] (imputed)	N
973	chr12	50882520	50882521	rs12427254	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.12	LARP4	rs12427254-T	0.187	1E-8		0.1991	[0.13-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
973	chr12	50885179	50885180	rs149091311	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	12q13.12	LARP4, DIP2B	rs149091311-T	0.036	2E-7		0.1805	[0.11-0.25] unit increase	NR [4841651] (imputed)	N
973	chr12	50896989	50896991	rs774361108	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.12	DIP2B	rs774361108-C	0.6576	8E-12		0.02663272	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
973	chr12	50901881	50901882	rs10876041	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	12q13.12	NR	rs10876041-?	NR	2E-7				NR [1800000]	N
973	chr12	50905167	50905168	rs11614911	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.12		rs11614911-G	0.361	5E-13				Affymetrix [10369434] (imputed)	N
973	chr12	50906089	50906090	rs55939211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.12	DIP2B	rs55939211-G	0.344798	3E-36		0.029546093	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr12	50914877	50914880	rs386376482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.12	DIP2B	rs386376482-G	0.657275	4E-23		0.023524929	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
973	chr12	50921494	50921495	rs4768849	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q13.12	NR	rs4768849-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
973	chr12	50930650	50930650	rs11390181	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q13.12	DIP2B	rs11390181-AT	0.3353	4E-14		0.0295376	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
973	chr12	50968329	50968330	rs35173156	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q13.12	DIP2B	rs35173156-C	NR	2E-11		0.0330374	[0.023-0.043] unit increase	Affymetrix [16832071] (imputed)	N
974	chr12	51042486	51042486	rs111538456	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q13.12	NR	rs111538456-C	0.651365	2E-17		0.0262953	[0.02-0.033] unit increase	Affymetrix [16577313] (imputed)	N
974	chr12	51045448	51045449	rs4768903	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	12q13.12	DIP2B, ATF1	rs4768903-A	0.61	4E-8		1.1	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
974	chr12	51051006	51051013	rs71086466	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12q13.12	DIP2B	rs71086466-C	0.733	2E-11		0.027194	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
974	chr12	51055707	51055708	rs1521516	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q13.12	DIP2B	rs1521516-T	0.3084	3E-12		0.0164	[0.012-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
974	chr12	51055707	51055708	rs1521516	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		12q13.12	DIP2B	rs1521516-?	NR	3E-11		0.0072	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
974	chr12	51056510	51056511	rs17210898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	DIP2B	rs17210898-G		4E-8		0.556	unit increase	Affymetrix [at least 2696785] (imputed)	N
974	chr12	51056510	51056511	rs17210898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.12	DIP2B	rs17210898-G		1E-8		0.351	unit increase	Affymetrix [at least 2696785] (imputed)	N
974	chr12	51060349	51060350	rs2731439	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	12q13.12	DIP2B	rs2731439-T	0.36	9E-12		0.0064	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
975	chr12	51120173	51120174	rs7308872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.12		rs7308872-C	NR	1E-17		0.0114	[0.0089-0.0139] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
975	chr12	51120173	51120174	rs7308872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs7308872-C	0.640569	2E-43				Affymetrix, Illumina [24588908] (imputed)	N
975	chr12	51120173	51120174	rs7308872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.12	NR	rs7308872-C	0.636534	2E-43		0.026197	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
975	chr12	51120173	51120174	rs7308872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q13.12		rs7308872-?	NR	2E-21				NR [~ 8900000] (imputed)	N
975	chr12	51134740	51134741	rs7968440	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.12		rs7968440-G	0.37	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
975	chr12	51134740	51134741	rs7968440	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q13.12	NR	rs7968440-G	0.3492	3E-9				NR [9056863] (imputed)	N
975	chr12	51134740	51134741	rs7968440	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q13.12	LIMA1, FAM186A, LARP4, DIP2B, ATF1	rs7968440-?		5E-11				NR [7428630] (imputed)	N
975	chr12	51134740	51134741	rs7968440	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	12q13.12	DIP2B	rs7968440-A	0.64	3E-8	(EA)	0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
975	chr12	51138686	51138687	rs2280503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.12	DIP2B	rs2280503-C	0.344419	2E-29		0.026312362	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
975	chr12	51138686	51138687	rs2280503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs2280503-A	0.658294	4E-40				Affymetrix, Illumina [22063850] (imputed)	N
975	chr12	51138686	51138687	rs2280503	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q13.12	NR	rs2280503-A	0.657127	7E-42		0.02695	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
975	chr12	51138861	51138862	rs1047912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q13.12	NR	rs1047912-T	NR	3E-13		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
975	chr12	51138861	51138862	rs1047912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.12	NR	rs1047912-T	NR	3E-15		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
975	chr12	51138861	51138862	rs1047912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q13.12	NR	rs1047912-T	NR	3E-13		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
975	chr12	51138861	51138862	rs1047912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q13.12	NR	rs1047912-T	NR	5E-12		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr12	51138861	51138862	rs1047912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.12		rs1047912-?	NR	5E-35				NR [~ 8900000] (imputed)	N
975	chr12	51138861	51138862	rs1047912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q13.12		rs1047912-?	NR	6E-11				NR [~ 8900000] (imputed)	N
975	chr12	51144431	51144432	rs4307773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.12	DIP2B	rs4307773-C	0.581904	3E-9		0.013452785	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr12	51144431	51144432	rs4307773	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q13.12	NR	rs4307773-T	0.418763	6E-31		0.0141535	[0.012-0.017] unit increase	Affymetrix [16585854] (imputed)	N
975	chr12	51144431	51144432	rs4307773	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q13.12	NR	rs4307773-T	0.418763	1E-21		0.0133397	[0.011-0.016] unit increase	Affymetrix [16585866] (imputed)	N
975	chr12	51144431	51144432	rs4307773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.12		rs4307773-T	0.4102	2E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr12	51144431	51144432	rs4307773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.12	Intergenic	rs4307773-T	0.4102	1E-8	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
975	chr12	51144431	51144432	rs4307773	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	12q13.12		rs4307773-T	0.41	1E-9		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
975	chr12	51145081	51145082	rs7974517	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	12q13.12	DIP2B, ATF1	rs7974517-?	NR	2E-9		1.1520737	[1.10-1.21]	Illumina [13436641] (imputed)	N
975	chr12	51155662	51155663	rs11169552	20972440	Houlston RS	2010-10-24	Nat Genet	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	12q13.12	DIP2B, ATF1	rs11169552-C	NR	2E-10		1.09	[1.05-1.11]	Illumina [up to 550000] (imputed)	N
975	chr12	51157862	51157863	rs61926301	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q13.12	ATF1	rs61926301-G	0.596663	2E-10		0.0122696	[0.0085-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
975	chr12	51161743	51161744	rs12829524	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q13.12	ATF1	rs12829524-T	0.3138	2E-9		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
975	chr12	51171089	51171090	rs12372718	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q13.12	DIP2B, ATF1	rs12372718-G	0.3924	2E-23		1.09	[1.07-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
975	chr12	51180142	51180143	rs10783387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	12q13.12		rs10783387-T	NR	4E-13		0.079	[0.058-0.1] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
975	chr12	51180142	51180143	rs10783387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q13.12		rs10783387-T	NR	2E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
975	chr12	51187289	51187290	rs11169562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12q13.12		rs11169562-T	NR	2E-9		0.0568	[0.038-0.075] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
975	chr12	51188396	51188397	rs1561422	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	12q13.12		rs1561422-C	0.331842	2E-8		0.0383695	[0.024-0.053] decrease	Affymetrix [NR]	N
975	chr12	51194826	51194827	rs4768862	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q13.12	ATF1	rs4768862-?	NR	9E-10		0.045	NR L decrease	Affymetrix [9390170] (imputed)	N
975	chr12	51194826	51194827	rs4768862	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.12	ATF1	rs4768862-G	0.6197	1E-14		0.264	[0.2-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
975	chr12	51201606	51201607	rs35624680	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q13.12	ATF1	rs35624680-T	0.631762	3E-10		0.0132149	[0.0091-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
975	chr12	51209837	51209838	rs7966357	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12q13.12	ATF1	rs7966357-C	0.643299	8E-13		0.00288008	[0.0021-0.0037] unit increase	Affymetrix [13995440] (imputed)	N
975	chr12	51209837	51209838	rs7966357	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12q13.12	ATF1	rs7966357-C	0.6627	3E-10		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
975	chr12	51213432	51213433	rs17291650	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q13.12	ATF1	rs17291650-?	0.10	3E-7	(Recessive)	1.43	[1.25-1.64]	Affymetrix [319222]	N
975	chr12	51213764	51213765	rs11169571	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q13.12	ATF1	rs11169571-C	0.386228060501869	5E-6		0.21262334	[0.12-0.3] unit decrease	Illumina [247039]	N
975	chr12	51216889	51216890	rs11169572	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12q13.12	NR	rs11169572-C	NR	6E-14		1.09	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
975	chr12	51217317	51217317	rs10689431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	12q13.12	NR	rs10689431-CTA	NR	2E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr12	51220896	51220897	rs7295386	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q13.12	ATF1	rs7295386-C	NR	9E-6		1.0539628	NR	Affymetrix, Illumina [8278136] (imputed)	N
975	chr12	51221126	51221127	rs864899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q13.12		rs864899-G	NR	3E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
975	chr12	51221126	51221127	rs864899	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q13.12	ATF1, TMPRSS12	rs864899-G	0.58	1E-10		6.43	z-score increase	Affymetrix [4312306] (imputed)	N
975	chr12	51221126	51221127	rs864899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.12		rs864899-G	0.58535	2E-13		0.0166651	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr12	51221126	51221127	rs864899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs864899-G	0.535169	4E-18				Affymetrix, Illumina [24246363] (imputed)	N
975	chr12	51221126	51221127	rs864899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q13.12	NR	rs864899-G	0.586596	2E-21		0.017662	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
975	chr12	51221126	51221127	rs864899	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q13.12	NR	rs864899-?		9E-10				NR [7428630] (imputed)	N
975	chr12	51221126	51221127	rs864899	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q13.12	NR	rs864899-A	0.415437	5E-47		0.012	[0.01-0.014] unit increase	Affymetrix [16582909] (imputed)	N
975	chr12	51221126	51221127	rs864899	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q13.12	NR	rs864899-A	0.415822	2E-17		0.00921874	[0.0069-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
975	chr12	51221126	51221127	rs864899	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q13.12	NR	rs864899-A	0.415437	2E-35		0.0115547	[0.0097-0.0134] unit increase	Affymetrix [16582965] (imputed)	N
975	chr12	51221126	51221127	rs864899	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q13.12	NR	rs864899-A	0.415822	1E-13		0.00888771	[0.0064-0.0114] unit increase	Affymetrix [16582614] (imputed)	N
976	chr12	51272983	51272984	rs4768934	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.12	NR	rs4768934-T	0.583919	4E-8		0.0379367	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
976	chr12	51315030	51315031	rs12305097	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.12	METTL7A	rs12305097-T	0.571385	3E-12		0.0130117	[0.0093-0.0167] unit increase	NR [13737936] (imputed)	N
976	chr12	51315030	51315031	rs12305097	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.12		rs12305097-?	NR	2E-15		0.0150077	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
976	chr12	51325428	51325429	rs319941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.12		rs319941-?	NR	5E-8				NR [~ 8900000] (imputed)	N
976	chr12	51327582	51327583	rs77360222	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q13.12	NR	rs77360222-?	NR	1E-6		0.12307	[0.073-0.173] unit increase	Affymetrix [805426] (imputed)	N
976	chr12	51357541	51357542	rs12304921	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	12q13.12	NR	rs12304921-G	0.15	7E-6		2.5	[1.53-4.09]	Affymetrix [469557]	N
976	chr12	51363456	51363457	rs117102029	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Depression score x vitamin D interaction	109,543 European ancestry individuals	NA	12q13.12		rs117102029-?	NR	4E-8		0.01	[0.0061-0.0139] unit increase	Affymetrix [NR] (imputed)	N
976	chr12	51375818	51375819	rs829021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.12	NR	rs829021-C	0.941333	3E-10				Affymetrix, Illumina [20825802] (imputed)	N
977	chr12	51426656	51426657	rs67133203	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	12q13.12	NR	rs67133203-?	NR	3E-6		0.0419	[0.024-0.06] unit increase	Illumina [at least 560000] (imputed)	N
978	chr12	51580170	51580171	rs11169751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.13		rs11169751-?	NR	5E-10				NR [~ 8900000] (imputed)	N
978	chr12	51593615	51593616	rs4077093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q13.13		rs4077093-G	NR	9E-9		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
978	chr12	51593615	51593616	rs4077093	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q13.13	POU6F1	rs4077093-T	0.215777	8E-9		0.00969144	[0.0064-0.013] unit increase	Affymetrix [12370749]	N
978	chr12	51593615	51593616	rs4077093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.13	NR	rs4077093-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
978	chr12	51593615	51593616	rs4077093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.13		rs4077093-?	NR	4E-8				NR [~ 8900000] (imputed)	N
978	chr12	51605862	51605863	rs540545522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.13	POU6F1	rs540545522-G	0.050781	7E-10		0.034201883	[0.023-0.045] unit increase	Affymetrix [93095623] (imputed)	N
978	chr12	51605862	51605863	rs540545522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.13	NR	rs540545522-G	0.050663	9E-12		0.034443	[0.025-0.044] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
978	chr12	51610364	51610365	rs7399018	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	12q13.13	POU6F1	rs7399018-T	NR	9E-6		4.438	z score increase	Illumina [5060354] (imputed)	N
978	chr12	51614249	51614250	rs77167808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.13		rs77167808-?	NR	4E-11				NR [~ 8900000] (imputed)	N
979	chr12	51654673	51654674	rs143975070	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	12q13.13	NR	rs143975070-G	0.908548	1E-10		0.042193	[0.029-0.055] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
979	chr12	51659589	51659590	rs73109050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.13		rs73109050-?	NR	5E-10				NR [~ 8900000] (imputed)	N
979	chr12	51664511	51664512	rs7133314	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.13		rs7133314-T	0.105	2E-16				Affymetrix [10369434] (imputed)	N
979	chr12	51667935	51667936	rs117327684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.13	SMAGP	rs117327684-T	0.105258	3E-78		0.06699583	[0.06-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr12	51672016	51672017	rs115589277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.13	BIN2	rs115589277-A	0.104989	4E-20		0.033548728	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
979	chr12	51673700	51673703	rs781329210	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q13.13	BIN2	rs781329210-C	0.1069	9E-27		0.06251642	[0.051-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
979	chr12	51681845	51681846	rs4611251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs4611251-C	0.112098	3E-104				Affymetrix, Illumina [17210439] (imputed)	N
979	chr12	51684789	51684790	rs145279960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.13	NR	rs145279960-G	0.894596	2E-102		0.065881	[0.06-0.072] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
979	chr12	51686989	51686990	rs117491712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q13.13		rs117491712-T	0.096518	6E-12		0.0387619	[0.028-0.05] unit decrease	Illumina [13478928] (imputed)	N
979	chr12	51693020	51693021	rs142121602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q13.13		rs142121602-T	NR	1E-8		0.0563	[0.037-0.076] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
979	chr12	51695898	51695899	rs146410757	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Basophil count	438,607 European ancestry individuals	NA	12q13.13		rs146410757-?	NR	4E-9		0.749648	[0.5-1] unit increase	NR [9800000] (imputed)	N
979	chr12	51703833	51703834	rs766903	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	12q13.13	BIN2	rs766903-A	0.83	2E-6		0.09	[0.05-0.13] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
979	chr12	51720046	51720047	rs117053853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.13	BIN2	rs117053853-A	0.011005	3E-22		0.10331404	[0.082-0.124] unit increase	Affymetrix [93095623] (imputed)	N
979	chr12	51720046	51720047	rs117053853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12q13.13	BIN2	rs117053853-A	0.011082	3E-25		0.11154255	[0.09-0.133] unit increase	Affymetrix [93095623] (imputed)	N
979	chr12	51720046	51720047	rs117053853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q13.13	BIN2	rs117053853-A	0.011082	8E-30		0.12179126	[0.1-0.14] unit increase	Affymetrix [93095623] (imputed)	N
979	chr12	51726743	51726744	rs543634974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Back pain	22,413 European ancestry cases, 445,856 European ancestry controls, 1,732 East Asian ancestry cases, 176,994 East Asian ancestry controls	NA	12q13.13		rs543634974-T	NR	1E-8		0.8006	[0.53-1.08] unit increase	Affymetrix, Illumina [25841286] (imputed)	N
979	chr12	51726743	51726744	rs543634974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Back pain	1,732 East Asian ancestry cases, 176,994 East Asian ancestry controls	NA	12q13.13		rs543634974-T	0.018484752	1E-8		0.80058855	[0.53-1.08] unit increase	Illumina [13429980] (imputed)	N
979	chr12	51727595	51727596	rs3951439	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.13	CELA1	rs3951439-G	0.0060	6E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
979	chr12	51735885	51735886	rs113316657	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q13.13	NR	rs113316657-?	NR	1E-6		0.12873	[0.076-0.181] unit increase	Affymetrix [805426] (imputed)	N
979	chr12	51740349	51740350	rs17860282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q13.13	CELA1	rs17860282-T	0.010962	4E-9		0.06277346	[0.042-0.084] unit increase	Affymetrix [93095623] (imputed)	N
979	chr12	51740349	51740350	rs17860282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs17860282-T	0.0108406	7E-25				Affymetrix, Illumina [19905671] (imputed)	N
979	chr12	51740349	51740350	rs17860282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q13.13	NR	rs17860282-T	0.011189	3E-26		0.104693	[0.085-0.124] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
979	chr12	51756268	51756269	rs3782473	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	12q13.13	GALNT6	rs3782473-T	NR	7E-10		0.172	[0.12-0.23] unit increase	Affymetrix [7701190] (imputed)	N
979	chr12	51756268	51756269	rs3782473	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	12q13.13		rs3782473-T	0.765455	5E-11		0.0701696	[0.049-0.091] decrease	Affymetrix [11014269] (imputed)	N
979	chr12	51764976	51764977	rs10876165	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12q13.13	GALNT6	rs10876165-T	NR	3E-6	(EA)			Illumina [up to 11995908] (imputed)	N
980	chr12	51780635	51780636	rs10876168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q13.13	NR	rs10876168-T	NR	1E-10		0.0157	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
980	chr12	51780635	51780636	rs10876168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q13.13	NR	rs10876168-T	NR	1E-9		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
980	chr12	51783419	51783420	rs10876169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.13		rs10876169-?	NR	3E-9				NR [~ 8900000] (imputed)	N
980	chr12	51795622	51795623	rs9795910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q13.13		rs9795910-G	NR	1E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
980	chr12	51796889	51796941	rs376258966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q13.13		rs376258966-A	NR	3E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
980	chr12	51799304	51799305	rs78546080	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	12q13.13	GALNT6, SLC4A8	rs78546080-?	NR	2E-8		0.0234752	[0.015-0.032] unit increase	Affymetrix [25921788] (imputed)	N
980	chr12	51808780	51808781	rs7954659	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q13.13	NR	rs7954659-T	0.46	3E-10		0.00682177	[0.0047-0.0089] unit decrease	NR [9732723] (imputed)	N
980	chr12	51834007	51834008	rs7956306	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q13.13	NR	rs7956306-A	0.459	2E-10		0.00842972	[0.0058-0.011] unit decrease	NR [~ 9732723] (imputed)	N
980	chr12	51878759	51878760	rs147845115	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q13.13	SLC4A8	rs147845115-?	0.03	3E-7		0.29	unit decrease	Illumina [NR] (imputed)	N
980	chr12	51878830	51878831	rs2135831	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	12q13.13	NR	rs2135831-G	0.544	1E-11		0.01167156	[0.0083-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
980	chr12	51880444	51880445	rs4761974	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	12q13.13	SLC4A8	rs4761974-T	0.06	3E-6		2.0	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
980	chr12	51880444	51880445	rs4761974	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	12q13.13	SLC4A8	rs4761974-T	0.057	9E-7		2.0	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
980	chr12	51880826	51880827	rs4761976	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q13.13	NR	rs4761976-C	0.436382	1E-8		0.0406134	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
980	chr12	51881724	51881725	rs10783446	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	12q13.13	NR	rs10783446-C	0.5338	6E-12		0.014149228	[0.01-0.018] unit decrease	Affymetrix [10613246] (imputed)	N
980	chr12	51895881	51895882	rs10876188	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	12q13.13	NR	rs10876188-T	0.457	5E-8		0.007986853	[0.0051-0.0109] unit decrease	NR [~ 10000000] (imputed)	N
980	chr12	51903859	51903860	rs12296477	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	12q13.13	SLC4A8	rs12296477-C	0.5469	4E-8		5.484	[NR] z score increase	Affymetrix [14069427] (imputed)	N
981	chr12	51919133	51919137	rs34807503	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants and depression	7,795 European ancestry responder cases, 191,173 European ancestry healthy controls	NA	12q13.13	SLC4A8, SCN8A	rs34807503-?		5E-7		1.0905125	[1.05-1.13]	Illumina [~ 12000000] (imputed)	N
981	chr12	51956397	51956397	rs547772207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q13.13		rs547772207-C,rs547772207-C	0.256818	5E-8		0.0250593	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
981	chr12	51956397	51956397	rs547772207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q13.13		rs547772207-C,rs547772207-C	0.256818	5E-8		0.0250593	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
981	chr12	51980458	51980459	rs12425096	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	12q13.13	SCN8A	rs12425096-A	0.775	5E-8	(EA)	0.0349	[0.022-0.047] unit increase	Affymetrix [up to 12500000] (imputed)	N
981	chr12	51984348	51984349	rs7958704	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	12q13.13	SCN8A	rs7958704-T	0.41	2E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
981	chr12	52010107	52010108	rs143888465	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	12q13.13	SCN8A	rs143888465-?	NR	4E-6	ANC <1000/mm3	4.94	NR	Illumina [7559010] (imputed)	N
982	chr12	52035647	52035648	rs10735836	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q13.13	SCN8A	rs10735836-A	0.8679	7E-10		0.015389	[0.01-0.02] unit decrease	Affymetrix [11880941] (imputed)	N
982	chr12	52042141	52042142	rs4761989	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q13.13	SCN8A	rs4761989-C	0.132	7E-10		1.0338607		Affymetrix [11880941] (imputed)	N
982	chr12	52128292	52128293	rs61936282	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q13.13	NR	rs61936282-?	NR	1E-8	(right inferior temporal)			NR [9227495] (imputed)	N
982	chr12	52166502	52166503	rs303806	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q13.13	NR	rs303806-?	NR	2E-6				Illumina [7427422] (imputed)	N
983	chr12	52189565	52189566	rs671255	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q13.13		rs671255-A	0.7505	1E-8		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
983	chr12	52232475	52232476	rs10783478	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy intake	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	12q13.13	FIGNL2	rs10783478-A	0.27	3E-8	(Men)	54.0	[35-74] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
983	chr12	52245937	52245938	rs303795	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	12q13.13	LOC728503	rs303795-C	0.49	5E-6		0.03	[0.01-0.05] unit increase	Illumina [1632371] (imputed)	N
983	chr12	52248786	52248787	rs11169926	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q13.13	LOC105369971	rs11169926-A	0.4583	3E-6	(East Asian)	0.029	[0.017-0.041] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
983	chr12	52248786	52248787	rs11169926	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q13.13	LOC105369971	rs11169926-A	0.3444	4E-18		0.0296	[0.023-0.036] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
983	chr12	52248786	52248787	rs11169926	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q13.13	NR	rs11169926-A	0.3648	5E-9	(men)	0.0315	[0.021-0.042] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
983	chr12	52248786	52248787	rs11169926	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q13.13	NR	rs11169926-A	0.3547	2E-6	(women)	0.0231	[0.013-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
983	chr12	52249231	52249232	rs148179165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q13.13		rs148179165-A	NR	3E-18		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
983	chr12	52249664	52249665	rs11169927	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q13.13	NR	rs11169927-A	0.75	9E-12		0.0143	[0.01-0.018] unit increase	NR [NR]	N
983	chr12	52251271	52251272	rs7976059	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.13	ACVR1B, ACVRL1	rs7976059-T	0.35	2E-9	(network)	0.032	[0.022-0.042] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
983	chr12	52251932	52251933	rs7315236	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q13.13	LOC105369971	rs7315236-T	0.357	2E-13		0.029135	[0.021-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
983	chr12	52254673	52254674	rs9669605	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy intake	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	12q13.13	Intergenic	rs9669605-T	0.3	2E-8	(Men)	54.0	[36-73] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
983	chr12	52257244	52257245	rs10876214	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy intake	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	12q13.13	ANKRD33	rs10876214-T	0.32	1E-9	(Men)	58.0	[39-77] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
983	chr12	52260071	52260072	rs12228470	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q13.13	LOC105369971, ANKRD33	rs12228470-A	0.4709	2E-7	(Japanese)	0.0223	[0.014-0.031] unit increase	Illumina [1986983] (imputed)	N
983	chr12	52260071	52260072	rs12228470	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q13.13	LOC105369971, ANKRD33	rs12228470-A	0.322	3E-6	(EA)	0.021428572	[0.012-0.03] unit increase	Illumina [1986983] (imputed)	N
983	chr12	52263955	52263956	rs17126180	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	12q13.13	ANKRD33	rs17126180-?	0.06	9E-7	(quetiapine)			Affymetrix [492900]	N
983	chr12	52268212	52268213	rs12230886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.13		rs12230886-C	0.107819	2E-12		0.02537925	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
983	chr12	52268352	52268353	rs4606526	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	13,625 European ancestry individuals, 1,465 African American individuals	NA	12q13.13	NR	rs4606526-?	NR	5E-7		0.287	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
984	chr12	52305785	52305786	rs1700159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q13.13		rs1700159-T	NR	2E-10		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
984	chr12	52305785	52305786	rs1700159	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	12q13.13		rs1700159-C	0.228	2E-8				Affymetrix [10369434] (imputed)	N
984	chr12	52305785	52305786	rs1700159	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12q13.13		rs1700159-C	0.228	7E-9				Affymetrix [10369434] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.771762	1E-20		0.024555305	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.771698	3E-21		0.02518572	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.771707	2E-10		0.017000787	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.771742	2E-15		0.020982396	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-C	0.228196	4E-13		0.019132491	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.771744	8E-9		0.015135433	[0.01-0.0203] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.786583	1E-26				Affymetrix, Illumina [24649327] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.774395	6E-28		0.02445	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.786612	6E-12				Affymetrix, Illumina [24588908] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.774475	1E-12		0.01569	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.782204	1E-18				Affymetrix, Illumina [23114412] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.773937	2E-20		0.02158	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.782888	3E-17				Affymetrix, Illumina [23467995] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.77386	2E-19		0.020438	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.782823	8E-12				Affymetrix, Illumina [23472807] (imputed)	N
984	chr12	52305785	52305786	rs1700159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q13.13	NR	rs1700159-T	0.773805	6E-14		0.017172	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
984	chr12	52305785	52305786	rs1700159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.13		rs1700159-?	NR	8E-19				NR [~ 8900000] (imputed)	N
984	chr12	52305785	52305786	rs1700159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q13.13		rs1700159-?	NR	7E-9				NR [~ 8900000] (imputed)	N
984	chr12	52305785	52305786	rs1700159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.7734	2E-14		0.03278325	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52305785	52305786	rs1700159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.7735	4E-11		0.02877429	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52305785	52305786	rs1700159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.7735	5E-13		0.03093112	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52305785	52305786	rs1700159	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q13.13	ACVRL1	rs1700159-T	0.7734	1E-9		0.02582382	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52314387	52314388	rs2277383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q13.13		rs2277383-G	NR	5E-18		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
984	chr12	52314387	52314388	rs2277383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q13.13	NR	rs2277383-G	0.113448	1E-19		0.026538	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
984	chr12	52315922	52315923	rs706819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs706819-T	0.263837	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
984	chr12	52315922	52315923	rs706819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.13	NR	rs706819-T	0.263101	3E-14		0.016409	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
984	chr12	52317056	52317057	rs2293093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q13.13		rs2293093-G	NR	2E-9		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
984	chr12	52317056	52317057	rs2293093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q13.13		rs2293093-G	NR	2E-19		0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
984	chr12	52317056	52317057	rs2293093	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	12q13.13	ACVRL1	rs2293093-G	0.111646	9E-9		0.051159054	[0.034-0.069] unit increase	Affymetrix [7288503] (imputed)	N
984	chr12	52317465	52317465	rs145295564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	12q13.13		rs145295564-CG	0.293043	5E-13		0.024309	[0.018-0.031] unit increase	Illumina [13478948] (imputed)	N
984	chr12	52317465	52317465	rs145295564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	12q13.13		rs145295564-CG	0.293438	9E-13		0.0244863	[0.018-0.031] unit increase	Illumina [13478961] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.13	ACVRL1	rs3847858-T	0.113253	6E-10		0.021613702	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs3847858-T	0.150319	5E-17				Affymetrix, Illumina [24332387] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs3847858-T	0.149094	3E-27				Affymetrix, Illumina [24653286] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q13.13	NR	rs3847858-T	0.113786	1E-16		0.023914	[0.018-0.03] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	12q13.13	NR	rs3847858-A	0.701601	3E-13		0.029339	[0.021-0.037] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs3847858-T	0.147469	3E-30				Affymetrix, Illumina [24558453] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	12q13.13	NR	rs3847858-A	0.703111	3E-13		0.029957	[0.022-0.038] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
984	chr12	52318377	52318378	rs3847858	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.13	ACVRL1	rs3847858-T		7E-10		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
984	chr12	52318377	52318378	rs3847858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.13		rs3847858-?	NR	3E-10				NR [~ 8900000] (imputed)	N
984	chr12	52318377	52318378	rs3847858	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	12q13.13	ACVRL1, ACVR1B	rs3847858-?	NR	9E-12		0.03162	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
984	chr12	52318377	52318378	rs3847858	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	12q13.13	ACVRL1, ACVR1B	rs3847858-?	NR	9E-10		0.02837	[0.019-0.037] unit increase novel	Illumina [6108953] (imputed)	N
984	chr12	52322724	52322725	rs181243019	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	12q13.13	NR	rs181243019-?	NR	5E-6		1.3765	[0.87-1.88] unit increase	Illumina [at least 560000] (imputed)	N
984	chr12	52325188	52325189	rs7397826	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q13.13		rs7397826-?	NR	3E-8				NR [NR]	N
984	chr12	52329768	52329769	rs10783481	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q13.13		rs10783481-?	NR	3E-8				NR [NR]	N
984	chr12	52331680	52331681	rs10783484	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q13.13	NR	rs10783484-T	0.252049924544805	2E-9		0.008202929	[0.0055-0.0109] unit increase	NR [NR]	N
984	chr12	52331680	52331681	rs10783484	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12q13.13	NR	rs10783484-T	0.252049924544805	1E-9		0.008683246	[0.0059-0.0115] unit increase	NR [NR]	N
984	chr12	52334813	52334814	rs116863940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12q13.13		rs116863940-T	NR	3E-8		0.0507	[0.033-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
984	chr12	52348258	52348259	rs7962469	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	12q13.13	ACVR1B	rs7962469-A	0.34	2E-8		0.064	[0.042-0.086] unit increase	Illumina [7312348] (imputed)	N
984	chr12	52348258	52348259	rs7962469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q13.13		rs7962469-?	NR	8E-19				NR [~ 8900000] (imputed)	N
984	chr12	52349070	52349071	rs11610143	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q13.13	NR	rs11610143-G	0.201545735884893	7E-12		0.007843594	[0.0056-0.0101] unit increase	NR [NR]	N
984	chr12	52349070	52349071	rs11610143	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q13.13	NR	rs11610143-G	0.201545735884893	4E-11		0.012195684	[0.0086-0.0158] unit increase	NR [NR]	N
984	chr12	52349070	52349071	rs11610143	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q13.13	NR	rs11610143-G	0.201545735884893	4E-11		0.007790976	[0.0055-0.0101] unit increase	NR [NR]	N
984	chr12	52349070	52349071	rs11610143	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	12q13.13	NR	rs11610143-?	NR	6E-8				NR [2100000]	N
984	chr12	52349070	52349071	rs11610143	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	12q13.13	ACVR1B	rs11610143-?	0.685	5E-9		1.1235955	[1.09-1.18]	Affymetrix, Illumina [7564751] (imputed)	N
984	chr12	52349070	52349071	rs11610143	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Adenocarcinoma	Up to 5,744 Chinese ancestry cases, up to 4,817 Chinese ancestry controls, up to 1,133 Japanese ancestry cases, up to 1,460 Japanese ancestry controls	Up to 4,647 Chinese ancestry cases, up to 4,099 Chinese ancestry controls, up to 1,231 Japanese ancestry cases, up to 2,947 Japanese ancestry controls	12q13.13	ACVR1B	rs11610143-?	0.685	2E-9		1.1363636	[1.09-1.19]	Affymetrix, Illumina [7564751] (imputed)	N
984	chr12	52349087	52349088	rs11612312	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	12q13.13	NR	rs11612312-T	0.7965	5E-9		0.030322546	[0.02-0.04] unit decrease	NR [NR]	N
984	chr12	52349087	52349088	rs11612312	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q13.13	NR	rs11612312-T	0.7934	6E-8		0.0226	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
984	chr12	52357314	52357315	rs59050332	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q13.13	NR	rs59050332-?	NR	1E-8				Illumina [7760689] (imputed)	N
984	chr12	52358194	52358195	rs771998	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q13.13	ACVR1B	rs771998-T	0.599	1E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
984	chr12	52361652	52361653	rs111930700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q13.13	ACVR1B	rs111930700-G	0.1203	2E-11		0.03728252	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52361652	52361653	rs111930700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q13.13	ACVR1B	rs111930700-G	0.1203	3E-11		0.03713089	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52361652	52361653	rs111930700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q13.13	ACVR1B	rs111930700-G	0.1203	2E-11		0.03750808	[0.027-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52361652	52361653	rs111930700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q13.13	ACVR1B	rs111930700-G	0.1203	2E-11		0.03735377	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
984	chr12	52381025	52381026	rs2252518	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	12q13.13	ACVR1B, GRASP	rs2252518-?		5E-7	(PC2)	0.0716	[NR] unit increase	Illumina [4167292] (imputed)	N
984	chr12	52384810	52384811	rs2641530	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q13.13	ACVR1B	rs2641530-T	0.308	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
985	chr12	52452088	52452089	rs17126257	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q13.13	C12orf44	rs17126257-?	NR	6E-6	(TAG 56:10)	1.1048988	[0.63-1.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
985	chr12	52461818	52461819	rs10783487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q13.13	C12orf44	rs10783487-A	0.1958	4E-11		0.02965133	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
985	chr12	52461818	52461819	rs10783487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q13.13	C12orf44	rs10783487-A	0.1958	4E-12		0.03128947	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
985	chr12	52466438	52466439	rs7979353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q13.13	NR	rs7979353-T	0.800435	4E-31		0.027516	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
985	chr12	52467865	52467865	rs11280603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q13.13		rs11280603-GCGGGC	NR	1E-18		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
985	chr12	52467865	52467865	rs11280603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q13.13		rs11280603-GCGGGC	NR	6E-23		0.0229	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
985	chr12	52468275	52468276	rs4762048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q13.13	NR	rs4762048-A	0.198072	2E-33		0.027582	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
985	chr12	52470108	52470109	rs7138000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.13	C12orf44	rs7138000-G	0.1975	4E-22		0.0281496	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr12	52470531	52470531	rs199948446	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	12q13.13	NR	rs199948446-C	NR	7E-6		0.3553	[0.2-0.51] SD units increase	NR [10700000] (imputed)	N
985	chr12	52471158	52471159	rs11521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.13		rs11521-?	NR	8E-9				NR [~ 8900000] (imputed)	N
985	chr12	52471158	52471159	rs11521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.13		rs11521-?	NR	3E-36				NR [~ 8900000] (imputed)	N
985	chr12	52479368	52479369	rs10467108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs10467108-C	0.256447	3E-35				Affymetrix, Illumina [24246363] (imputed)	N
985	chr12	52479368	52479369	rs10467108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs10467108-C	0.26024	2E-38				Affymetrix, Illumina [20825802] (imputed)	N
985	chr12	52479368	52479369	rs10467108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.13	NR	rs10467108-C	0.196727	5E-38		0.031193	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
985	chr12	52480155	52480156	rs199669276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q13.13	NR	rs199669276-D	0.196847	1E-10		0.016894	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
985	chr12	52482027	52482028	rs1920606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.13	RP1-288H2.4, OR7E47P	rs1920606-A	0.196147	2E-28		0.030973088	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
985	chr12	52482027	52482028	rs1920606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q13.13	RP1-288H2.4, OR7E47P	rs1920606-A	0.19626	6E-11		0.0177329	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr12	52482027	52482028	rs1920606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.13	RP1-288H2.4, OR7E47P	rs1920606-A	0.196293	2E-30		0.031903315	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr12	52482027	52482028	rs1920606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs1920606-G	0.802144	6E-31				Affymetrix, Illumina [22063850] (imputed)	N
985	chr12	52482027	52482028	rs1920606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.13		rs1920606-?	NR	5E-28				NR [~ 8900000] (imputed)	N
985	chr12	52492215	52492216	rs10783491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q13.13	NR	rs10783491-T	0.259503	3E-11		0.014571	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
985	chr12	52538840	52538841	rs17647312	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	12q13.13	NR	rs17647312-C		8E-6		0.4546	[0.25-0.65] SD units increase	NR [10700000] (imputed)	N
985	chr12	52544921	52544922	rs142871661	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	12q13.13	NR	rs142871661-T	0.02706	3E-6		0.438	[0.25-0.62] unit increase	Illumina [10677593] (imputed)	N
986	chr12	52587517	52587518	rs17653722	24465473	Liu Y	2014-01-21	PLoS One	A genome-wide association study identifies a locus on TERT for mean telomere length in Han Chinese.	Telomere length	2,632 Han Chinese ancestry individuals	3,917 Han Chinese ancestry individuals, 696 European ancestry individuals	12q13.13	KRT80	rs17653722-T	NR	7E-6	(Han Chinese)	0.1223	[NR] unit increase	Affymetrix [585206]	N
986	chr12	52590003	52590004	rs10783496	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	12q13.13	KRT80	rs10783496-A		7E-6		1.059	[1.033-1.086]	Illumina [4498586] (imputed)	N
986	chr12	52640276	52640277	rs936332	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q13.13	KRT7, KRT80, KRT121P	rs936332-G	0.379	1E-6		2.27	[1.62-3.2]	Illumina [1556551]	N
986	chr12	52648157	52648158	rs139727704	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	12q13.13		rs139727704-G	0.004434	3E-14		0.38	[0.28-0.48] unit increase	NR [11842647] (imputed)	N
986	chr12	52648157	52648158	rs139727704	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q13.13	KRT86, KRT7	rs139727704-G	0.004688	2E-12		1.414	NR	Affymetrix [9154080] (imputed)	N
986	chr12	52651995	52651996	rs150823320	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	12q13.13	KRT86, KRT18	rs150823320-A	0.02	7E-6	(EA)	0.32	0.18-0.46 unit decrease	Illumina [NR] (imputed)	N
986	chr12	52680765	52680766	rs59448276	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q13.13	KRT81, KRT122P, KRT86	rs59448276-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
986	chr12	52687415	52687416	rs12146804	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q13.13	NR	rs12146804-?	NR	2E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
987	chr12	52691957	52691958	rs17655565	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	12q13.13	KRT86	rs17655565-C	0.109	2E-6		0.12	[0.081-0.159] unit increase	Illumina [2316178] (imputed)	N
987	chr12	52751332	52751333	rs572672837	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q13.13	KRT85	rs572672837-A	0.0024	3E-6		0.4072	[0.24-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
987	chr12	52772523	52772524	rs1791618	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	12q13.13	NR	rs1791618-T	NR	9E-6	(AA)	0.105573	[0.059-0.152] unit decrease	Affymetrix [up to 6007810] (imputed)	N
988	chr12	52898984	52898985	rs657187	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	12q13.13	KRT6A, KRT5	rs657187-G	0.42	2E-9		0.07	[0.05-0.09] unit decrease	NR [13607369] (imputed)	N
988	chr12	52912908	52912909	rs641615	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12q13.13	NR	rs641615-G	NR	4E-7	(LME model)	0.53685	[0.33-0.74] unit decrease	NR [NR] (imputed)	N
988	chr12	52913516	52913517	rs638907	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	12q13.13	KRT5	rs638907-G	0.727714	2E-23		1.11	[1.08-1.13]	Affymetrix [7600000] (imputed)	N
988	chr12	52913667	52913668	rs11170164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	12q13.13		rs11170164-T	NR	4E-19		0.1586	[0.12-0.19] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
988	chr12	52913667	52913668	rs11170164	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	12q13.13		rs11170164-?	NR	9E-23		1.20574	[1.17-1.24]	NR [685523]	N
988	chr12	52913667	52913668	rs11170164	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	12q13.13		rs11170164-?	NR	2E-6		1.06142	[1.04-1.09]	NR [688737]	N
988	chr12	52913667	52913668	rs11170164	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	12q13.13	KRT5	rs11170164-T	0.0781363	3E-25		0.19515395	[0.16-0.23] unit increase	Affymetrix [7260263] (imputed)	N
988	chr12	52913667	52913668	rs11170164	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	12q13.13	KRT5	rs11170164-T	NR	2E-6		1.14	[1.08-1.20]	Affymetrix, Illumina [up to 9061544] (imputed)	N
988	chr12	52913667	52913668	rs11170164	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	12q13.13	KRT5	rs11170164-T	0.078342	2E-32		1.19	[1.16-1.23]	Affymetrix [7600000] (imputed)	N
988	chr12	52913667	52913668	rs11170164	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	12q13.13	KRT5	rs11170164-T	0.067077	2E-34		1.2	[1.17-1.22]	Affymetrix, Illumina [up to 9061544] (imputed)	N
988	chr12	52913667	52913668	rs11170164	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		12q13.13	KRT5	rs11170164-C	NR	2E-12		1.25	[1.18-1.33]	Affymetrix [5734850] (imputed)	N
988	chr12	52913667	52913668	rs11170164	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	12q13.13	KRT5	rs11170164-T	0.08	1E-15		1.19	[NR]	Illumina [at least 560000] (imputed)	N
988	chr12	52913667	52913668	rs11170164	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	12q13.13	KRT5	rs11170164-T	0.087	9E-9		1.29	[NR]	Illumina [24988228] (imputed)	N
988	chr12	52913667	52913668	rs11170164	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	12q13.13	KRT5	rs11170164-T		3E-6		1.25	[1.14-1.37]	Illumina [38500000] (imputed)	N
988	chr12	52932591	52932592	rs7961185	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.13	NR	rs7961185-G	0.487974	8E-19		0.0277739	[0.022-0.034] unit increase	NR [19129689] (imputed)	N
988	chr12	52933498	52933499	rs633816	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12q13.13		rs633816-A	NR	1E-6		0.4037	unit increase	Illumina [NR] (imputed)	N
988	chr12	52934915	52934916	rs684630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q13.13		rs684630-?	NR	4E-10				NR [~ 8900000] (imputed)	N
988	chr12	52946497	52946498	rs665470	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12q13.13	NR	rs665470-?		6E-7		0.013	[0.0079-0.0181] unit increase	Illumina [7533529] (imputed)	N
988	chr12	52950388	52950389	rs56235234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q13.13		rs56235234-?	NR	3E-10				NR [~ 8900000] (imputed)	N
989	chr12	52955063	52955064	rs3842942	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.13	NR	rs3842942-C	0.16507	4E-13		0.0302641	[0.022-0.038] unit decrease	NR [19129689] (imputed)	N
989	chr12	52962049	52962050	rs139723680	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	12q13.13	KRT74	rs139723680-?	0.0054	9E-6				Illumina [308166]	N
989	chr12	52971298	52971299	rs11608629	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals	NA	12q13.13	NR	rs11608629-T	0.0381	3E-24		590.406	[476.38-704.44] unit decrease	Affymetrix, Illumina [7567618] (imputed)	N
989	chr12	52994895	52994896	rs56207115	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	12q13.13	KRT72	rs56207115-?		3E-6				Illumina [7405822] (imputed)	N
989	chr12	53000986	53000987	rs670142	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	12q13.13	NR	rs670142-?	NR	2E-6		0.8528	[0.54-1.17] unit increase	Affymetrix [7154205] (imputed)	N
989	chr12	53007045	53007046	rs61521894	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		KRT73-AS1	rs61521894-T	0.18	8E-6		0.12	[0.07-0.17] unit decrease	Illumina [1679420] (imputed)	N
989	chr12	53044702	53044703	rs760067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.13		rs760067-?	NR	1E-9				NR [~ 8900000] (imputed)	N
990	chr12	53102195	53102196	rs678069	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	12q13.13	intergenic	rs678069-?	NR	4E-6	(SCL)	0.095	[0.054-0.136] unit increase	Illumina [527829]	N
990	chr12	53131675	53131676	rs11170254	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	12q13.13	NR	rs11170254-C	0.0858684	4E-6		0.112	[0.065-0.159] unit increase	NR [9260588] (imputed)	N
990	chr12	53134831	53134832	rs142992315	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q13.13	NR	rs142992315-?	NR	6E-9				Illumina [7760689] (imputed)	N
990	chr12	53204523	53204524	rs17119420	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q13.13		rs17119420-?	NR	2E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
990	chr12	53212381	53212382	rs7962509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	12q13.13		rs7962509-C	0.184352	2E-8		0.0253624	[0.016-0.034] unit decrease	Illumina [13478956] (imputed)	N
991	chr12	53216949	53216950	rs73102423	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q13.13		rs73102423-?	NR	6E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
991	chr12	53225447	53225448	rs73106411	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q13.13		rs73106411-?	NR	8E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
991	chr12	53233088	53233089	rs59439901	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q13.13		rs59439901-?	NR	4E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
991	chr12	53240114	53240115	rs73106425	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q13.13		rs73106425-?	NR	5E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
991	chr12	53261821	53261822	rs10876376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q13.13	NR	rs10876376-A	NR	7E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
991	chr12	53273084	53273085	rs17746508	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12q13.13	Intergenic	rs17746508-?		4E-6		0.07036694	[NR] unit decrease	Illumina [575353]	N
991	chr12	53273084	53273085	rs17746508	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12q13.13	Intergenic	rs17746508-?		3E-6		0.007678561	[NR] unit decrease	Illumina [575353]	N
991	chr12	53273903	53273904	rs902774	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	12q13.13		rs902774-?	NR	7E-7		1.1253	[1.08-1.17]	NR [680312]	N
991	chr12	53273903	53273904	rs902774	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	12q13.13	NR	rs902774-A	NR	2E-10		1.13	NR	Affymetrix [at least 232408] (imputed)	N
991	chr12	53273903	53273904	rs902774	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12q13.13	Intergenic	rs902774-?		4E-6		0.07036694	[NR] unit decrease	Illumina [575353]	N
991	chr12	53273903	53273904	rs902774	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12q13.13	Intergenic	rs902774-?		3E-6		0.007678561	[NR] unit decrease	Illumina [575353]	N
991	chr12	53273903	53273904	rs902774	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q13.13	NR	rs902774-A	0.15	2E-31		1.13	[1.11-1.16]	Illumina [20370935] (imputed)	N
991	chr12	53273903	53273904	rs902774	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	12q13.13	NR	rs902774-A	0.15	9E-8		1.16	[1.10-1.23]	Affymetrix [up to 19977088] (imputed)	N
991	chr12	53273903	53273904	rs902774	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	12q13.13	NR	rs902774-A	0.15	1E-7	(European)	1.17	[1.11-1.24]	Affymetrix [up to 19977088] (imputed)	N
991	chr12	53273903	53273904	rs902774	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	12q13.13	KRT8, EIF4B, TENC1	rs902774-A	0.17	5E-9		1.17	[1.11-1.24]	Illumina [571243]	N
991	chr12	53274673	53274674	rs2682302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	12q13.13		rs2682302-T	0.236017	2E-9		0.0243793	[0.016-0.032] unit increase	Illumina [13476165] (imputed)	N
991	chr12	53274673	53274674	rs2682302	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	12q13.13	KRT78, KRT8	rs2682302-?	NR	7E-9		0.02772	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
991	chr12	53275709	53275710	rs57625464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q13.13		rs57625464-A	NR	2E-20		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
991	chr12	53285085	53285086	rs11170319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q13.13		rs11170319-G	NR	5E-11		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
991	chr12	53285085	53285086	rs11170319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q13.13		rs11170319-G	NR	2E-13		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
991	chr12	53285085	53285086	rs11170319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q13.13		rs11170319-G	NR	3E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
991	chr12	53285085	53285086	rs11170319	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	12q13.13	KRT8	rs11170319-?	NR	1E-10		0.0018	[0.0012-0.0024] unit decrease	Affymetrix [21347608] (imputed)	N
991	chr12	53285085	53285086	rs11170319	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	12q13.13	KRT8	rs11170319-?	NR	2E-8		0.0023	[0.0015-0.0031] unit decrease	Affymetrix [21347608] (imputed)	N
991	chr12	53285085	53285086	rs11170319	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q13.13	KRT78, KRT8	rs11170319-G	0.55	2E-10		6.35	z-score increase	Affymetrix [4314223] (imputed)	N
991	chr12	53295080	53295081	rs4531558	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q13.13	KRT8	rs4531558-G	0.51	1E-8		5.72	z-score increase	Affymetrix [4312306] (imputed)	N
991	chr12	53295080	53295081	rs4531558	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q13.13	KRT8	rs4531558-?		5E-8		0.0195	[0.012-0.027] unit increase	Illumina [31500000] (imputed)	N
991	chr12	53295916	53295917	rs2035875	34216462	Pistoni L	2021-07-03	Carcinogenesis	Associations between pancreatic expression quantitative traits and risk of pancreatic ductal adenocarcinoma.	Pancreatic ductal adenocarcinoma	7,207 European ancestry cases, 7,062 European ancestry controls	2,039 Japanese ancestry cases, 32,592 Japanese ancestry controls, 4,467 cases, 4,130 controls	12q13.13		rs2035875-A	0.39	7E-10		1.11	[1.08-1.15]	Illumina [7509345] (imputed)	N
991	chr12	53298581	53298582	rs11554495	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	12q13.13	KRT8	rs11554495-A	0.0164	9E-14		1.62	[1.43-1.84]	Affymetrix, Illumina [NR] (imputed)	N
991	chr12	53303330	53303331	rs17120257	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	12q13.13		rs17120257-C	NR	1E-20		1.2217472	NR	Affymetrix [7846216] (imputed)	N
991	chr12	53305273	53305274	rs114198947	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	12q13.13	KRT8	rs114198947-A	0.03	7E-7		1.67	[NR]	Illumina [NR] (imputed)	N
991	chr12	53308931	53308932	rs113925811	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	12q13.13	NR	rs113925811-A	0.113283674	3E-12		1.1950083	[1.14-1.26]	Affymetrix, Illumina [20400945] (imputed)	N
991	chr12	53308931	53308932	rs113925811	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q13.13	NR	rs113925811-A	NR	5E-58		1.178	[1.15-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
991	chr12	53308931	53308932	rs113925811	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	12q13.13	NR	rs113925811-A	0.153	5E-9		1.174	[1.11-1.24]	Affymetrix, Illumina [18877980] (imputed)	N
991	chr12	53309768	53309769	rs527678952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q13.13	KRT8	rs527678952-G	5.27999999999973E-4	2E-9		0.3205935	[0.22-0.43] unit increase	Affymetrix [93095623] (imputed)	N
991	chr12	53312611	53312612	rs73110464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	12q13.13		rs73110464-T	NR	1E-17		0.187	[0.14-0.23] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
991	chr12	53312611	53312612	rs73110464	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	12q13.13	KRT8	rs73110464-T	NR	2E-15	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
991	chr12	53315664	53315665	rs142025399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	12q13.13		rs142025399-T	0.02874696	2E-17		0.5463741	[0.42-0.67] unit increase	Illumina [13406905] (imputed)	N
991	chr12	53315664	53315665	rs142025399	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	12q13.13		rs142025399-T	0.025720894	2E-10		1.6036009	[1.385713908-1.85574792]	Illumina [8919992] (imputed)	N
991	chr12	53329230	53329231	rs187809440	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q13.13	NR	rs187809440-T	NR	2E-12		1.342	[1.24-1.46]	Affymetrix, Illumina [29235255] (imputed)	N
991	chr12	53329230	53329231	rs187809440	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	12q13.13	NR	rs187809440-T	0.03	1E-12		1.355	[1.25-1.47]	Affymetrix, Illumina [10186136] (imputed)	N
992	chr12	53346749	53346750	rs3741442	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q13.13	KRT18	rs3741442-G	0.41	4E-12		1.22		Illumina [803202]	N
992	chr12	53357334	53357335	rs2363632	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	12q13.13	KRT18	rs2363632-?	NR	6E-6	(Asian)	1.3333333	[1.19-1.49]	Illumina [6090031] (imputed)	N
992	chr12	53357334	53357335	rs2363632	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	12q13.13	KRT18	rs2363632-?	NR	2E-7		1.369863	[1.19-1.56] (GENEVA cohort)	Illumina [6090031] (imputed)	N
992	chr12	53363014	53363015	rs2682323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q13.13		rs2682323-C	NR	3E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
992	chr12	53407011	53407012	rs115019703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.13	Intergenic	rs115019703-A	0.9714	2E-8	(MTAG)	0.0282	[0.018-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
992	chr12	53435284	53435284	rs113671070	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q13.13	EIF4B, TENC1	rs113671070-T	0.956316	3E-8	(-176 ms)	0.0750316	[0.048-0.102] unit increase	Affymetrix [10000000] (imputed)	N
992	chr12	53438703	53438704	rs2280447	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12q13.13	NR	rs2280447-?	NR	7E-6		0.0910862	[0.051-0.131] unit decrease	NR [13958389] (imputed)	N
992	chr12	53438703	53438704	rs2280447	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.13	LOC283335	rs2280447-?	NR	4E-17		0.035147253	[0.027-0.043] unit increase	Illumina [27896057] (imputed)	N
992	chr12	53440778	53440779	rs73099903	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.13	LOC283335	rs73099903-T	0.0767	9E-9		0.3724	[0.25-0.5] mmHg increase	Affymetrix [NR] (imputed)	N
992	chr12	53440778	53440779	rs73099903	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q13.13	LOC283335	rs73099903-T	0.074	8E-8	(EA, initial)	0.768	[0.49-1.05] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
992	chr12	53440778	53440779	rs73099903	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q13.13	LOC283335	rs73099903-T	0.074	2E-10		0.515	[0.36-0.67] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
992	chr12	53441262	53441262	rs540859660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q13.13		rs540859660-AGGGCGCG	NR	2E-13		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
992	chr12	53442955	53442956	rs12369033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.13		rs12369033-?	NR	7E-17				NR [~ 8900000] (imputed)	N
992	chr12	53448319	53448320	rs11170386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q13.13		rs11170386-T	NR	6E-12		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
992	chr12	53448319	53448320	rs11170386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q13.13		rs11170386-T	NR	3E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
992	chr12	53451876	53451877	rs151036307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	12q13.13		rs151036307-?	NR	3E-9		0.141466	[0.094-0.189] unit increase	NR [9800000] (imputed)	N
992	chr12	53451876	53451877	rs151036307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	12q13.13		rs151036307-?	NR	8E-12		0.124336	[0.088-0.161] unit decrease	NR [9800000] (imputed)	N
992	chr12	53463971	53463972	rs11170394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q13.13	SPRYD3	rs11170394-C	NR	2E-8		0.0284203	[0.019-0.038] unit increase	Affymetrix [321016] (imputed)	N
992	chr12	53463971	53463972	rs11170394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.13		rs11170394-?	NR	2E-19				NR [~ 8900000] (imputed)	N
992	chr12	53471217	53471218	rs7313065	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	12q13.13	ITGB7	rs7313065-A	0.162	3E-9		1.101		Illumina [715631] (imputed)	N
992	chr12	53471217	53471218	rs7313065	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	12q13.13	ITGB7	rs7313065-A	0.162	3E-9		1.101		Illumina [715631] (imputed)	N
993	chr12	53493729	53493729	rs9658614	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.13	SOAT2	rs9658614-G	0.9122	1E-16		0.0281	[0.021-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
993	chr12	53499504	53499505	rs2272303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	12q13.13		rs2272303-A	0.845884	2E-14		0.0436742	[0.032-0.055] unit increase	NR [11722792] (imputed)	N
993	chr12	53499504	53499505	rs2272303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	12q13.13		rs2272303-A	0.845884	2E-15		0.0454466	[0.034-0.057] unit decrease	NR [11722792] (imputed)	N
993	chr12	53500946	53500947	rs11170417	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	12q13.13	IGFBP6, SOAT2	rs11170417-T	0.12	7E-6		1.42		Illumina [8974355] (imputed)	N
993	chr12	53506095	53506096	rs28883710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	12q13.13		rs28883710-T	0.845964	1E-8		0.0318977	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
993	chr12	53511266	53511267	rs3892410	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	12q13.13		rs3892410-C	0.845661	2E-9		0.0347082	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
993	chr12	53525627	53525628	rs71455229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.13	Intergenic	rs71455229-A	0.0627	7E-9	(MTAG)	0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr12	53525627	53525628	rs71455229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.13	Intergenic	rs71455229-A	0.0599	2E-8	(MTAG)	0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr12	53545691	53545692	rs11170445	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	12q13.13	CSAD	rs11170445-T	NR	8E-9		1.96	[1.56-2.46]	Affymetrix [426851] (imputed)	N
993	chr12	53554282	53554283	rs2272306	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.13	CSAD, ITGB7	rs2272306-A	0.134	2E-6	(Leptin )	0.04	[NR] ng/mL increase	Illumina [899892]	N
993	chr12	53581382	53581383	rs74796725	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	12q13.13	ZNF740	rs74796725-?	NR	2E-8	(African)			Illumina [4404269] (imputed)	N
993	chr12	53589510	53589511	rs11574539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q13.13		rs11574539-G	NR	9E-9		0.0226	[0.015-0.03] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
993	chr12	53593631	53593632	rs12232003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q13.13	Intergenic	rs12232003-T	0.9194	3E-9		0.0248	[0.017-0.033] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
993	chr12	53594437	53594438	rs11574532	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	12q13.13	intergenic	rs11574532-T	0.07	2E-7		3.25	[2.08-5.07]	NR [~ 38000000] (imputed)	N
993	chr12	53594581	53594582	rs11170469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.13		rs11170469-?	NR	5E-10				NR [~ 8900000] (imputed)	N
993	chr12	53605343	53605344	rs3741434	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q13.13	NR	rs3741434-?		4E-8				NR [8377093]	N
993	chr12	53605343	53605344	rs3741434	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12q13.13	NR	rs3741434-?		4E-8				NR [8377093]	N
993	chr12	53605343	53605344	rs3741434	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q13.13	RARG	rs3741434-?	NR	1E-10		0.019061647	[0.013-0.025] unit increase	NR [7306098]	N
993	chr12	53605343	53605344	rs3741434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q13.13	Intergenic	rs3741434-T	0.8583	5E-8		0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
993	chr12	53605544	53605545	rs2229774	26237429	Aminkeng F	2015-08-03	Nat Genet	A coding variant in RARG confers susceptibility to anthracycline-induced cardiotoxicity in childhood cancer.	Anthracycline-induced cardiotoxicity in childhood cancer	32 European ancestry cases with cardiotoxicity, 248 European ancestry cases without cardiotoxicity	22 European ancestry cases with cardiotoxicity, 74 European ancestry cases without cardiotoxicity, 2 African cases with cardiotoxicity, 9 African cases without cardiotoxicity, 5 Hispanic cases with cardiotoxicity, 18 Hispanic cases without cardiotoxicity, 8 East Asian cases with cardiotoxicity, 23 East Asian cases without cardiotoxicity, 4 Aboriginal Canadian cases with cardiotoxicity, 11 Aboriginal Canadian cases without cardiotoxicity	12q13.13	RARG	rs2229774-A	0.076	8E-8	(EA)	5.4	[2.9-10.3]	Illumina [657694]	N
993	chr12	53605544	53605545	rs2229774	26237429	Aminkeng F	2015-08-03	Nat Genet	A coding variant in RARG confers susceptibility to anthracycline-induced cardiotoxicity in childhood cancer.	Anthracycline-induced cardiotoxicity in childhood cancer	32 European ancestry cases with cardiotoxicity, 248 European ancestry cases without cardiotoxicity	22 European ancestry cases with cardiotoxicity, 74 European ancestry cases without cardiotoxicity, 2 African cases with cardiotoxicity, 9 African cases without cardiotoxicity, 5 Hispanic cases with cardiotoxicity, 18 Hispanic cases without cardiotoxicity, 8 East Asian cases with cardiotoxicity, 23 East Asian cases without cardiotoxicity, 4 Aboriginal Canadian cases with cardiotoxicity, 11 Aboriginal Canadian cases without cardiotoxicity	12q13.13	RARG	rs2229774-A	0.064	6E-8		4.7	[2.7-8.3]	Illumina [657694]	N
994	chr12	53611790	53611791	rs11170481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q13.13		rs11170481-?	NR	9E-9				NR [~ 8900000] (imputed)	N
994	chr12	53614348	53614349	rs941138	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	12q13.13	RARG	rs941138-C		2E-7		10.1	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
994	chr12	53631347	53631348	rs182599555	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	12q13.13	NR	rs182599555-?	NR	9E-6		2.0918	[0.91-3.28] unit increase	Illumina [at least 560000] (imputed)	N
994	chr12	53659447	53659448	rs7398996	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	12q13.13	NR	rs7398996-T	0.6855	2E-11		0.0762	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
994	chr12	53664147	53664148	rs4758963	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.13	NR	rs4758963-G	0.520355	2E-10		0.012082	[0.0084-0.0158] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
994	chr12	53671548	53671549	rs2272313	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	12q13.13	ESPL1	rs2272313-A	0.519258	3E-13		0.0583	[0.043-0.074] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
994	chr12	53671548	53671549	rs2272313	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	12q13.13	ESPL1	rs2272313-A	0.519258	2E-6		0.0337	[0.02-0.048] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
994	chr12	53680954	53680955	rs35969387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.13	NR	rs35969387-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
994	chr12	53687386	53687387	rs1056692	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q13.13	Intergenic	rs1056692-?	NR	5E-6		1.37	[NR]	Affymetrix [492217] (imputed)	N
994	chr12	53708909	53708910	rs11540353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q13.13	NR	rs11540353-G	NR	4E-10		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
994	chr12	53722140	53722141	rs200422616	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	12q13.13		rs200422616-?	NR	9E-11		0.353712	[0.24-0.46] unit decrease	NR [9800000] (imputed)	N
994	chr12	53722360	53722361	rs199673881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.13		rs199673881-A	NR	8E-29		0.1044	[0.086-0.123] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
994	chr12	53722360	53722361	rs199673881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q13.13		rs199673881-A	0.011502	8E-29		0.104427	[0.086-0.123] unit decrease	Illumina [13479295] (imputed)	N
994	chr12	53722360	53722361	rs199673881	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.13	SP7	rs199673881-?	NR	1E-29		0.15140666	[0.13-0.18] unit decrease	Illumina [27896057] (imputed)	N
994	chr12	53727544	53727545	rs930900	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q13.13	SP7	rs930900-T	0.310455	1E-41		0.00327436	[0.0028-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
994	chr12	53727544	53727545	rs930900	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12q13.13	SP7	rs930900-C	0.69	2E-18		8.78	z-score increase	Affymetrix [4311822] (imputed)	N
994	chr12	53727544	53727545	rs930900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.13	SP7	rs930900-C	0.689664	8E-11		0.020347	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr12	53727544	53727545	rs930900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.13	SP7	rs930900-C	0.689699	3E-9		0.014718021	[0.0099-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
994	chr12	53727954	53727955	rs2016266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q13.13		rs2016266-A	NR	6E-30		0.0281	[0.023-0.033] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
994	chr12	53727954	53727955	rs2016266	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.13	SP7	rs2016266-A	0.68	3E-20		0.05	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr12	53727954	53727955	rs2016266	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	12q13.13	SP7	rs2016266-G	0.32	1E-8		0.07	[0.05-0.09] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
994	chr12	53728368	53728369	rs10783573	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.13	SP7	rs10783573-G	0.325338	7E-18		0.017072	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
994	chr12	53728368	53728369	rs10783573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.13		rs10783573-?	NR	2E-16				NR [~ 8900000] (imputed)	N
994	chr12	53730454	53730455	rs4759113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12q13.13		rs4759113-T	0.773636	9E-20		0.0390933	[0.031-0.048] unit increase	Illumina [13476266] (imputed)	N
994	chr12	53731890	53731891	rs10876432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q13.13	NR	rs10876432-A	NR	2E-26		0.0279	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
994	chr12	53731890	53731891	rs10876432	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	12q13.13	SP7	rs10876432-A	0.73	1E-7		0.08	[0.05-0.11] s.d. decrease	Illumina [305051]	N
995	chr12	53743049	53743050	rs11170509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q13.13		rs11170509-T	NR	3E-46		0.0374	[0.032-0.042] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
995	chr12	53743063	53743064	rs10735851	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.13	NR	rs10735851-A	0.7133	2E-15	(European)	0.0548	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
995	chr12	53743063	53743064	rs10735851	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.13	NR	rs10735851-A	0.7083	6E-18		0.0541	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
995	chr12	53744157	53744158	rs191643352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.13		rs191643352-?	NR	4E-12				NR [~ 8900000] (imputed)	N
995	chr12	53745799	53745800	rs144680237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	12q13.13		rs144680237-T	NR	2E-11		0.1166	[0.083-0.151] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
995	chr12	53747852	53747853	rs138488218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q13.13	intergenic	rs138488218-T	0.0117	5E-10		0.1111065	[0.076-0.146] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53747852	53747853	rs138488218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q13.13	intergenic	rs138488218-T	0.0117	9E-11		0.1159753	[0.081-0.151] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53747852	53747853	rs138488218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q13.13	intergenic	rs138488218-T	0.0117	8E-11		0.1163673	[0.081-0.151] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53747852	53747853	rs138488218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q13.13	intergenic	rs138488218-T	0.0117	8E-10		0.110071	[0.075-0.145] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53750336	53750337	rs144737537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	SP7	rs144737537-A	NR	6E-9		0.0585253	[0.039-0.078] unit increase	Affymetrix [319769] (imputed)	N
995	chr12	53750336	53750337	rs144737537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	SP7	rs144737537-A	NR	9E-9		0.0578426	[0.038-0.078] unit increase	Affymetrix [319769] (imputed)	N
995	chr12	53750336	53750337	rs144737537	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs144737537-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr12	53752691	53752692	rs11170516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q13.13		rs11170516-A	NR	4E-39		0.0343	[0.029-0.039] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
995	chr12	53752691	53752692	rs11170516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	12q13.13		rs11170516-A	0.220582	7E-20		0.0398935	[0.031-0.048] unit decrease	Illumina [13476299] (imputed)	N
995	chr12	53752691	53752692	rs11170516	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q13.13	SP7	rs11170516-G	0.846472	2E-12		0.0186506	[0.013-0.024] unit increase	Affymetrix [NR] (imputed)	N
995	chr12	53752691	53752692	rs11170516	31856834	Chen Z	2019-12-19	BMC Med Genomics	Genome-wide association study in Chinese cohort identifies one novel hypospadias risk associated locus at 12q13.13.	Hypospadias (moderate to severe)	197 Han Chinese ancestry cases, 933 Han Chinese ancestry controls	255 Han Chinese ancestry cases, 573 Han Chinese ancestry controls	12q13.13	SP1, SP7	rs11170516-G	0.784	4E-9		1.96	[1.59-2.44]	Illumina [3015028] (imputed)	N
995	chr12	53752691	53752692	rs11170516	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	12q13.13	SP7, SP1	rs11170516-?	NR	3E-15		0.04021	[0.03-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
995	chr12	53753908	53753909	rs11170517	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q13.13	SP7	rs11170517-C	0.86428	5E-13		0.0207039	[0.015-0.026] unit increase	Affymetrix [NR] (imputed)	N
995	chr12	53757830	53757831	rs12582170	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q13.13		rs12582170-A	0.156	1E-26		0.16	[-0.19--0.13] % decrease	Affymetrix [NR] (imputed)	N
995	chr12	53757830	53757831	rs12582170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q13.13		rs12582170-G	0.843912	2E-33		0.037252173	[0.031-0.043] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53757830	53757831	rs12582170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.13		rs12582170-G	0.84388	2E-21		0.030031858	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53757830	53757831	rs12582170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs12582170-G	0.82044	1E-67				Affymetrix, Illumina [24246363] (imputed)	N
995	chr12	53757830	53757831	rs12582170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.13	NR	rs12582170-G	0.843956	7E-37		0.033652	[0.028-0.039] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
995	chr12	53757830	53757831	rs12582170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q13.13	intergenic	rs12582170-G	0.8445	1E-21		0.04641941	[0.037-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53760161	53760162	rs58123204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs58123204-G	0.166347	4E-48				Affymetrix, Illumina [20825802] (imputed)	N
995	chr12	53760161	53760162	rs58123204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.13		rs58123204-?	NR	2E-37				NR [~ 8900000] (imputed)	N
995	chr12	53760161	53760162	rs58123204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q13.13	intergenic	rs58123204-G	0.1532	3E-15		0.03859187	[0.029-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53772926	53772927	rs7131938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.13		rs7131938-?	NR	7E-8				NR [~ 8900000] (imputed)	N
995	chr12	53777170	53777171	rs3741651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.13	SP1	rs3741651-G	0.173235	1E-34		0.035776604	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53777170	53777171	rs3741651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs3741651-G	0.182605	7E-45				Affymetrix, Illumina [24332387] (imputed)	N
995	chr12	53777170	53777171	rs3741651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q13.13	NR	rs3741651-G	0.172415	8E-42		0.033068	[0.028-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
995	chr12	53777170	53777171	rs3741651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.13		rs3741651-?	NR	4E-41				NR [~ 8900000] (imputed)	N
995	chr12	53778649	53778650	rs2446066	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.13		rs2446066-T	0.17	1E-10		6.42	z score increase	Affymetrix [9061022] (imputed)	N
995	chr12	53778649	53778650	rs2446066	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.13		rs2446066-T	0.17	2E-13		7.37	z score increase	Affymetrix [9061022] (imputed)	N
995	chr12	53778649	53778650	rs2446066	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.13	NR	rs2446066-T	0.1754	3E-8				NR [9056863] (imputed)	N
995	chr12	53778649	53778650	rs2446066	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q13.13	SP1	rs2446066-T	0.1738	1E-10		0.03020141	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53779320	53779321	rs10876448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q13.13	SP1	rs10876448-G	0.175132	1E-10		0.019009437	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53779320	53779321	rs10876448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q13.13	SP1	rs10876448-G	0.175131	3E-18		0.025657687	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53779320	53779321	rs10876448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	12q13.13	NR	rs10876448-A	0.777946	2E-16		0.04118	[0.031-0.051] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
995	chr12	53780321	53780325	rs34378330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q13.13	SP1	rs34378330-T	0.174216	1E-10		0.018896535	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
995	chr12	53780723	53780724	rs7298225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q13.13		rs7298225-T	NR	7E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
995	chr12	53783173	53783174	rs9739640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q13.13		rs9739640-G	NR	7E-32		0.0262	[0.022-0.031] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
995	chr12	53783173	53783174	rs9739640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.13	SP1	rs9739640-G	0.167323	1E-40		0.040510874	[0.035-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
995	chr12	53783173	53783174	rs9739640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.13	SP1	rs9739640-G	0.167206	2E-30		0.0403317	[0.035-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
995	chr12	53783173	53783174	rs9739640	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q13.13	SP1	rs9739640-G	0.1676	2E-10		0.03104118	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53783181	53783182	rs12818938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q13.13	NR	rs12818938-T	0.832422	4E-14		0.00857123	[0.0064-0.0108] unit increase	Affymetrix [16582909] (imputed)	N
995	chr12	53783181	53783182	rs12818938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q13.13	NR	rs12818938-T	0.832236	1E-8		0.0083449	[0.0053-0.0114] unit increase	Affymetrix [16582621] (imputed)	N
995	chr12	53783181	53783182	rs12818938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q13.13	NR	rs12818938-T	0.832422	1E-16		0.0105558	[0.0081-0.013] unit increase	Affymetrix [16582965] (imputed)	N
995	chr12	53783181	53783182	rs12818938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q13.13	NR	rs12818938-T	0.832236	1E-8		0.00949617	[0.0062-0.0128] unit increase	Affymetrix [16582614] (imputed)	N
995	chr12	53785860	53785861	rs7134628	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q13.13	NA	rs7134628-A	0.1019	3E-9		0.0168	[0.011-0.022] unit increase	NR [~ 27400000] (imputed)	N
995	chr12	53786384	53786385	rs11170530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	12q13.13	NR	rs11170530-C	0.781115	2E-16		0.041002	[0.031-0.051] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
995	chr12	53787952	53787953	rs2460882	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	12q13.13	SP1	rs2460882-?	NR	3E-15		0.04244	[0.032-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
995	chr12	53787952	53787953	rs2460882	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	12q13.13	SP1	rs2460882-T	NR	6E-7	(Cases)	0.11	[0.067-0.153] unit increase	Illumina [6900000] (imputed)	N
995	chr12	53788002	53788002	rs147124286	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	12q13.13	SP1	rs147124286-?	NR	4E-7		1.3513513		Illumina [6419662] (imputed)	N
995	chr12	53788002	53788002	rs147124286	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	12q13.13	SP1	rs147124286-?		4E-7				Illumina [6419662] (imputed)	N
995	chr12	53791170	53791171	rs138952514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12q13.13	SP1	rs138952514-A	0.0124	3E-10		0.1092448	[0.075-0.143] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53796743	53796744	rs11170538	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.13		rs11170538-T	NR	6E-7		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
995	chr12	53796743	53796744	rs11170538	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.13		rs11170538-T	0.547	1E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
995	chr12	53796743	53796744	rs11170538	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.13	NR	rs11170538-T	NR	3E-9		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
995	chr12	53797235	53797236	rs34656641	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Parkinsonism in frontotemporal lobe dementia	184 European ancestry cases, 198 European ancestry controls	NA	12q13.13	SP1	rs34656641-C	0.08	8E-6		3.26	[2.75-3.77]	Illumina [7033776] (imputed)	N
995	chr12	53801114	53801115	rs79205721	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.13		rs79205721-T	0.17	2E-9		6.03	z score increase	Affymetrix [9061022] (imputed)	N
995	chr12	53811033	53811034	rs10876450	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q13.13	SP1	rs10876450-T	0.826259	1E-8		0.0157064	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
995	chr12	53831063	53831064	rs36120387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.13	NR	rs36120387-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
995	chr12	53831063	53831064	rs36120387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.13		rs36120387-?	NR	9E-10				NR [~ 8900000] (imputed)	N
995	chr12	53838258	53838259	rs550235164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q13.13	PCBP2, RP11-793H13.8, PRR13	rs550235164-A	0.0089	1E-22		0.2007477	[0.16-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53838258	53838259	rs550235164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q13.13	PCBP2, RP11-793H13.8, PRR13	rs550235164-A	0.0089	5E-23		0.2029767	[0.16-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
995	chr12	53847472	53847473	rs10783580	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q13.13	NR	rs10783580-G	0.294235	1E-8		0.0440544	[0.029-0.059] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
996	chr12	53883536	53883537	rs77511173	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q13.13	MAP3K12	rs77511173-C	0.08	1E-8	(Japanese, Male)	0.044	[0.028-0.06] unit decrease	Illumina [6108953] (imputed)	N
996	chr12	53916714	53916715	rs12321906	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	12q13.13	ATF7	rs12321906-T	0.87	5E-6		0.052	[0.030-0.074] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
996	chr12	53924940	53924941	rs113821260	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.13	ATF7	rs113821260-A	0.966103	3E-9		0.0303824	[0.02-0.04] unit decrease	NR [13737936] (imputed)	N
996	chr12	53943056	53943057	rs4450209	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q13.13		rs4450209-?	NR	4E-9				NR [9705931] (imputed)	N
996	chr12	53944118	53944119	rs11170594	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.13		rs11170594-?	NR	2E-13		0.0164442	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
996	chr12	53948443	53948444	rs111470210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.13		rs111470210-?	NR	2E-8				NR [~ 8900000] (imputed)	N
996	chr12	53955484	53955485	rs1485394	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	12q13.13	ATF7	rs1485394-?	NR	8E-6	(Beta power, Cz)	0.089	[0.05-0.128] unit increase	Illumina [527829]	N
996	chr12	53966345	53966346	rs74479304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs74479304-A	0.01142	2E-13		0.080396384	[0.059-0.102] unit increase	Affymetrix [93095623] (imputed)	N
996	chr12	53971325	53971326	rs10467109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.13		rs10467109-?	NR	7E-17				NR [~ 8900000] (imputed)	N
996	chr12	53986050	53986051	rs12580469	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q13.13	ATP5G2	rs12580469-?	NR	2E-6	(creatinine)	1.3815016	[0.81-1.95] unit decrease	Affymetrix [at least 2500000] (imputed)	N
996	chr12	53995076	53995077	rs1485395	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	12q13.13	intergenic	rs1485395-C	0.16	7E-6		1.13	[1.07-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
996	chr12	53999911	53999912	rs10783587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q13.13		rs10783587-A	NR	5E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
997	chr12	54009976	54009977	rs2365344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q13.13	NR	rs2365344-A	NR	4E-14		0.0258	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
997	chr12	54011486	54011487	rs117788567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q13.13		rs117788567-T	NR	6E-9		0.0722	[0.048-0.097] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
997	chr12	54011486	54011487	rs117788567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q13.13		rs117788567-T	NR	2E-16		0.1021	[0.078-0.126] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
997	chr12	54011486	54011487	rs117788567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs117788567-T	0.00978900000000005	5E-17		0.09760135	[0.075-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr12	54011486	54011487	rs117788567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs117788567-T	0.00978699999999999	9E-39		0.1521054	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
997	chr12	54011486	54011487	rs117788567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.13		rs117788567-?	NR	3E-10				NR [~ 8900000] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs181969679-G	0.00979799999999997	2E-22		0.11320604	[0.09-0.136] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs181969679-G	0.00979699999999994	5E-11		0.076129705	[0.053-0.099] unit increase	Affymetrix [93095623] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs181969679-G	0.00980099999999995	6E-13		0.08380142	[0.061-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.0091778	4E-11				Affymetrix, Illumina [24649327] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.009432	6E-14		0.07494	[0.055-0.095] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.00937416	4E-25				Affymetrix, Illumina [23114412] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.009564	3E-28		0.114184	[0.094-0.134] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.00970076	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
997	chr12	54011728	54011729	rs181969679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q13.13	NR	rs181969679-G	0.009843	2E-12		0.075999	[0.055-0.097] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
997	chr12	54020202	54020203	rs10876469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.13	ATF7, RP11-793H13.10	rs10876469-G	0.306488	6E-11		0.015951296	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
997	chr12	54022601	54022602	rs7970462	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.13	ATF7, ATP5G2	rs7970462-?	NR	5E-22		0.028507803	[0.023-0.034] unit increase	Illumina [27896057] (imputed)	N
997	chr12	54030237	54030238	rs11170624	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q13.13	ATF7	rs11170624-T	0.24	9E-15		0.037	[0.023-0.051] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
997	chr12	54041191	54041192	rs11170631	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	12q13.13	ATF7, ATP5G2	rs11170631-C	0.36	9E-7		0.05	[0.03-0.07] cm increase	Illumina [420885]	N
997	chr12	54043139	54043140	rs10876474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q13.13		rs10876474-?	NR	1E-9				NR [~ 8900000] (imputed)	N
997	chr12	54045186	54045187	rs7962971	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.13	NR	rs7962971-C	0.093053	2E-10		0.0339069	[0.024-0.044] unit increase	NR [19129689] (imputed)	N
997	chr12	54058237	54058238	rs1971762	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q13.13	ATP5G2	rs1971762-T	0.44	7E-18		0.043	[0.031-0.055] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
997	chr12	54059738	54059739	rs10876478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q13.13		rs10876478-C	NR	4E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
997	chr12	54063492	54063493	rs1800634	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.13	NR	rs1800634-T	0.2767	1E-8	(European)	0.041	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
997	chr12	54063492	54063493	rs1800634	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q13.13	NR	rs1800634-T	0.2701	1E-10		0.0433	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
997	chr12	54074685	54074686	rs12309572	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.13	ATP5MC2	rs12309572-T	0.1667	5E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
997	chr12	54099075	54099076	rs11170652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q13.13		rs11170652-A	0.194401	1E-13		0.020859841	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr12	54114157	54114158	rs941184	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q13.13	CALCOCO1	rs941184-?	0.03	3E-7				Affymetrix [253903]	N
997	chr12	54132590	54132591	rs938729214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.13		rs938729214-A	3.61999999999973E-4	2E-9		0.48429054	[0.33-0.64] unit increase	Affymetrix [93095623] (imputed)	N
998	chr12	54154173	54154174	rs11170678	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	12q13.13	HOXC13	rs11170678-G	0.257371166	1E-13		0.060416665	[0.044-0.076] unit decrease	Illumina [up to 9350000] (imputed)	N
998	chr12	54159276	54159277	rs7969151	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	12q13.13	LOC440100	rs7969151-A	0.21	2E-6		0.13	[0.07-0.19] tanning ability score increase	Illumina [528173]	N
998	chr12	54184926	54184927	rs12426763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	SNORD81	rs12426763-T	NR	9E-10		0.0389035	[0.026-0.051] unit increase	Affymetrix [319769] (imputed)	N
998	chr12	54184926	54184927	rs12426763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	SNORD81	rs12426763-T	NR	2E-9		0.0382321	[0.026-0.051] unit increase	Affymetrix [319769] (imputed)	N
998	chr12	54221447	54221448	rs1920024	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	12q13.13	NR	rs1920024-?	NR	7E-6		0.6673	[0.34-0.99] unit increase	Illumina [at least 560000] (imputed)	N
998	chr12	54241278	54241279	rs17774123	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	12q13.13	intergenic	rs17774123-?	NR	1E-6	(Female, Puberty)	0.136	[0.081-0.191] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
999	chr12	54270227	54270228	rs2120991	20460270	Garcia-Barcelo MM	2010-05-11	Hum Mol Genet	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	12q13.13	HOXC13	rs2120991-A	0.134	9E-6		2.14	[1.58-2.89]	Affymetrix [289118]	N
999	chr12	54275265	54275266	rs1596370	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	12q13.13	CALCOCO1, HOXC13	rs1596370-A	0.21	8E-7		0.021	[0.013-0.029] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
999	chr12	54287369	54287370	rs11830166	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q13.13	NR	rs11830166-?	NR	8E-21				Affymetrix [NR]	N
999	chr12	54317357	54317358	rs7139153	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs7139153-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54319726	54319727	rs894734	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	12q13.13	HOXC13	rs894734-G	0.776	4E-6	(Dominant model)	1.619	[1.279-2.05]	Illumina [733202]	N
999	chr12	54320489	54320490	rs75824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs75824359-G	NR	2E-12		0.0595442	[0.043-0.076] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54320489	54320490	rs75824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs75824359-G	NR	9E-13		0.0603608	[0.044-0.077] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54320489	54320490	rs75824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs75824359-G	NR	9E-9		0.0489353	[0.032-0.066] unit decrease	Affymetrix [321114] (imputed)	N
999	chr12	54320489	54320490	rs75824359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs75824359-G	NR	1E-9		0.0521288	[0.035-0.069] unit decrease	Affymetrix [321169] (imputed)	N
999	chr12	54320489	54320490	rs75824359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs75824359-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54320489	54320490	rs75824359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs75824359-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54322587	54322588	rs61921763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs61921763-C	NR	2E-21		0.0441522	[0.035-0.053] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54322587	54322588	rs61921763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs61921763-C	NR	3E-21		0.0440169	[0.035-0.053] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54322587	54322588	rs61921763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs61921763-C	NR	2E-13		0.0346334	[0.025-0.044] unit increase	Affymetrix [321114] (imputed)	N
999	chr12	54322587	54322588	rs61921763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs61921763-C	NR	2E-15		0.0372708	[0.028-0.046] unit increase	Affymetrix [321169] (imputed)	N
999	chr12	54322587	54322588	rs61921763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs61921763-?	NR	9E-25				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54322587	54322588	rs61921763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs61921763-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54323147	54323148	rs2366142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs2366142-T	NR	3E-12		0.0211866	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54325795	54325796	rs7301643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs7301643-G	NR	3E-12		0.0212027	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54325795	54325796	rs7301643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC13-AS	rs7301643-G	NR	3E-8		0.0169424	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
999	chr12	54331582	54331583	rs71455259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs71455259-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54331582	54331583	rs71455259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs71455259-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54332733	54332733	rs535209331	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q13.13	HOXC13	rs535209331-?	NR	5E-9		1.1976048	NR	Affymetrix [9154080] (imputed)	N
999	chr12	54342325	54342326	rs1822438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC13	rs1822438-A	NR	4E-12		0.0236359	[0.017-0.03] unit decrease	Affymetrix [321016] (imputed)	N
999	chr12	54342683	54342684	rs1443512	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q13.13	NR	rs1443512-A	0.21	3E-51		0.031	[0.027-0.035] unit increase	Affymetrix [2446094] (imputed)	N
999	chr12	54342683	54342684	rs1443512	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q13.13	NR	rs1443512-A	0.21	5E-8				Affymetrix [2446094] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	5E-13	(EA, women)	0.0435	[0.032-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	4E-13		0.0315	[0.023-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	3E-13	(women)	0.0405	[0.03-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	1E-13	(EA)	0.0349	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	6E-14	(EA)	0.0398	[0.029-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2348	6E-14		0.0398	[0.029-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2325	3E-12	(women)	0.0476	[0.034-0.061] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC13	rs1443512-A	0.2325	3E-12	(EA, women)	0.0476	[0.034-0.061] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-?	0.2348	5E-12	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-?	0.2348	5E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-?	0.2348	1E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC13	rs1443512-?	0.2348	1E-13				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	5E-7	(women)	0.0204	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	3E-7		0.0172	[0.011-0.024] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	5E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	5E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	2E-11	(women)	0.0394	[0.028-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC13	rs1443512-A	0.2662	1E-10		0.0271	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12q13.13	HOXC13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, LOC100652999, ATP5G2, CALCOCO1, HOXC-AS5, HOXC12, HOTAIR, HOXC11, HOXC10, MIR196A2, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, MIR615, FLJ12825, LOC100240735, LOC100240734, LOC400043, SMUG1, CBX5, MIR3198-2, HNRNPA1, HNRNPA1P10, NFE2, COPZ1, MIR148B, GPR84, ZNF385A, ITGA5	rs1443512-A	0.2364	7E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	12q13.13	HOXC13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, LOC100652999, ATP5G2, CALCOCO1, HOXC-AS5, HOXC12, HOTAIR, HOXC11, HOXC10, MIR196A2, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, MIR615, FLJ12825, LOC100240735, LOC100240734, LOC400043, SMUG1	rs1443512-A	0.236373142633965	1E-8	(women)	0.038	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	12q13.13	PCBP2, HOXC13, MAP3K12, TARBP2, NPFF, ATF7, LOC100652999, ATP5G2; CALCOCO1, HOXC-AS5, HOXC12, HOTAIR, HOXC11, HOXC10, MIR196A2, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, MIR615, FLJ12825, LOC100240735, LOC100240734, LOC400043, SMUG	rs1443512-A	0.24	6E-6	(women)	0.038	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q13.13	HOXC13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, LOC100652999, ATP5G2, CALCOCO1, HOXC-AS5, HOXC12, HOTAIR, HOXC11, HOXC10, MIR196A2, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, MIR615, FLJ12825, LOC100240735, LOC100240734, LOC400043, SMUG1	rs1443512-A	0.23638	4E-13		0.038	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.257	1E-13		0.0282	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.2542	8E-16	(women)	0.0408	[0.031-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.2373	7E-13	(EA)	0.0283	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.235	1E-14	(EA, women)	0.0404	[0.03-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.2351	3E-11	(EA)	0.0261	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC13	rs1443512-A	0.2351	2E-13	(EA, women)	0.0375	[0.028-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54342683	54342684	rs1443512	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	12q13.13	HOXC13	rs1443512-A	0.24	6E-17		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
999	chr12	54342821	54342822	rs1838173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC13	rs1838173-T	NR	1E-12		0.0291734	[0.021-0.037] unit decrease	Affymetrix [321016] (imputed)	N
999	chr12	54342821	54342822	rs1838173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC13	rs1838173-T	NR	7E-18		0.0358238	[0.028-0.044] unit increase	Affymetrix [321169] (imputed)	N
999	chr12	54346494	54346495	rs10747688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC12	rs10747688-C	NR	7E-32		0.0482978	[0.04-0.056] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54346494	54346495	rs10747688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q13.13	HOXC12	rs10747688-C	NR	2E-10		0.0290567	[0.02-0.038] unit increase	Affymetrix [323858] (imputed)	N
999	chr12	54346494	54346495	rs10747688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs10747688-C	NR	2E-31		0.0480194	[0.04-0.056] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54346494	54346495	rs10747688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q13.13	HOXC12	rs10747688-C	NR	5E-10		0.0284952	[0.02-0.037] unit increase	Affymetrix [127266] (imputed)	N
999	chr12	54346494	54346495	rs10747688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs10747688-C	NR	2E-13		0.0314036	[0.023-0.04] unit decrease	Affymetrix [321788] (imputed)	N
999	chr12	54346868	54346869	rs894739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs894739-T	NR	6E-13		0.0255237	[0.019-0.032] unit decrease	Affymetrix [321788] (imputed)	N
999	chr12	54346868	54346869	rs894739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q13.13		rs894739-?	NR	6E-45				NR [~ 8900000] (imputed)	N
999	chr12	54347697	54347698	rs2366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC12	rs2366149-T	NR	7E-38		0.0439219	[0.037-0.051] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54347697	54347698	rs2366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs2366149-T	NR	1E-37		0.04384	[0.037-0.051] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54347697	54347698	rs2366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs2366149-T	NR	1E-20		0.0321756	[0.025-0.039] unit increase	Affymetrix [321114] (imputed)	N
999	chr12	54347697	54347698	rs2366149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs2366149-T	NR	5E-24		0.0349223	[0.028-0.042] unit increase	Affymetrix [321169] (imputed)	N
999	chr12	54348152	54348153	rs4332564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC12	rs4332564-T	NR	1E-10		0.0433929	[0.03-0.057] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54348152	54348153	rs4332564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC12	rs4332564-T	NR	9E-11		0.0437764	[0.031-0.057] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	9E-11		0.0257	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	3E-8	(women)	0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	4E-9	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	7E-13		0.035	[0.025-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC12	rs10783615-A	0.7973	7E-11	(women)	0.0412	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12q13.13	NR	rs10783615-A	0.855651556311748	2E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q13.13	NR	rs10783615-A	0.855651556311748	3E-14		0.036315188	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr12	54349772	54349773	rs10783615	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC12	rs10783615-G	0.1825	2E-13		0.0343	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54349772	54349773	rs10783615	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC12	rs10783615-G	0.1811	3E-13	(women)	0.0455	[0.033-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54349772	54349773	rs10783615	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC12	rs10783615-G	0.144	3E-13	(EA)	0.0359	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54349772	54349773	rs10783615	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC12	rs10783615-G	0.143	4E-12	(EA, women)	0.0454	[0.033-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
999	chr12	54349900	54349901	rs180807105	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair/balding pattern: Pattern 1 (UKB data field 2395_1)	66,172 European ancestry cases, 140,864 European ancestry controls	NA	12q13.13		rs180807105-G	0.006149	5E-13		0.3	[0.22-0.38] unit increase	NR [11842647] (imputed)	N
999	chr12	54349900	54349901	rs180807105	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.13	NR	rs180807105-G	0.00679101	2E-22		0.182806	[0.15-0.22] unit decrease	NR [19129689] (imputed)	N
999	chr12	54353101	54353102	rs58494653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	AC012531.23	rs58494653-G	NR	6E-11		0.0280709	[0.02-0.036] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54353101	54353102	rs58494653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	AC012531.23	rs58494653-G	NR	2E-10		0.0275041	[0.019-0.036] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54353101	54353102	rs58494653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	AC012531.23	rs58494653-G	NR	5E-8		0.023632	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
999	chr12	54353101	54353102	rs58494653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	AC012531.23	rs58494653-G	NR	4E-8		0.0238282	[0.015-0.032] unit increase	Affymetrix [321169] (imputed)	N
999	chr12	54353101	54353102	rs58494653	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs58494653-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54353101	54353102	rs58494653	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs58494653-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54357756	54357756	rs763855108	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.13		rs763855108-?	NR	4E-14		0.0174984	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
999	chr12	54358047	54358047	rs71227278	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	12q13.13	NR	rs71227278-?	NR	3E-6		0.0355	[0.021-0.05] unit decrease	Illumina [at least 560000] (imputed)	N
999	chr12	54360231	54360232	rs920778	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12q13.13	HOXC11	rs920778-?	0.35429999999999995	7E-10		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
999	chr12	54370656	54370657	rs11170776	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs11170776-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54384762	54384762	rs34025887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12q13.13	RP11-834C11.12, HOXC6	rs34025887-GC	NR	3E-9		0.0249499	[0.017-0.033] unit decrease	Affymetrix [323858] (imputed)	N
999	chr12	54385598	54385599	rs11614913	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	12q13.13	MIR196A2	rs11614913-T	0.478	2E-42		0.09	[0.077-0.103] unit decrease	Illumina [33400000] (imputed)	N
999	chr12	54385598	54385599	rs11614913	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	MIR196A2	rs11614913-T	0.415	4E-8	(EA, women)	0.0313	[0.02-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
999	chr12	54386598	54386600	rs745829328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.13	RP11-834C11.12, HOXC6	rs745829328-G	0.331349	4E-11		0.017314058	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
999	chr12	54387946	54387947	rs3803042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC-AS2	rs3803042-A	NR	2E-19		0.0282242	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
999	chr12	54387946	54387947	rs3803042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC-AS2	rs3803042-A	NR	6E-24		0.0315736	[0.025-0.038] unit increase	Affymetrix [323858] (imputed)	N
999	chr12	54387946	54387947	rs3803042	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs3803042-?	NR	7E-40				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54387946	54387947	rs3803042	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs3803042-?	NR	3E-55				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54387946	54387947	rs3803042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q13.13		rs3803042-?	NR	6E-9				NR [~ 8900000] (imputed)	N
999	chr12	54387946	54387947	rs3803042	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q13.13	NR	rs3803042-A	0.4295	5E-49		0.0268	[0.023-0.03] unit increase	NR [~ 27400000] (imputed)	N
999	chr12	54387946	54387947	rs3803042	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q13.13	NR	rs3803042-A	0.4295	6E-33		0.0216	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
999	chr12	54388472	54388473	rs4759316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q13.13		rs4759316-?	NR	4E-23				NR [~ 8900000] (imputed)	N
999	chr12	54389178	54389179	rs75493807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC-AS2, HOXC9	rs75493807-A	NR	3E-9		0.0427409	[0.029-0.057] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54389178	54389179	rs75493807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC-AS2, HOXC9	rs75493807-A	NR	4E-9		0.0423137	[0.028-0.056] unit decrease	Affymetrix [319769] (imputed)	N
999	chr12	54389178	54389179	rs75493807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC-AS2, HOXC9	rs75493807-A	NR	4E-9		0.0428765	[0.029-0.057] unit decrease	Affymetrix [321169] (imputed)	N
999	chr12	54389178	54389179	rs75493807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs75493807-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54389178	54389179	rs75493807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs75493807-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
999	chr12	54393769	54393770	rs56368105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56368105-G	NR	2E-11		0.0212061	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
999	chr12	54393769	54393770	rs56368105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56368105-G	NR	7E-12		0.0217396	[0.016-0.028] unit increase	Affymetrix [127266] (imputed)	N
999	chr12	54393773	54393774	rs12817092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs12817092-G	NR	3E-10		0.0181227	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
999	chr12	54393773	54393774	rs12817092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs12817092-G	NR	5E-10		0.0178863	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
999	chr12	54393782	54393783	rs56154542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56154542-C	NR	1E-31		0.0338128	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54393782	54393783	rs56154542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56154542-C	NR	6E-33		0.0345361	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
999	chr12	54393782	54393783	rs56154542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56154542-C	NR	5E-37		0.0370792	[0.031-0.043] unit increase	Affymetrix [321114] (imputed)	N
999	chr12	54393782	54393783	rs56154542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC9, HOXC-AS1	rs56154542-C	NR	6E-40		0.0386487	[0.033-0.044] unit increase	Affymetrix [321169] (imputed)	N
1000	chr12	54395081	54395082	rs12300425	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.13	HOXC9	rs12300425-G	0.415851	4E-15		0.0147662	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1000	chr12	54395081	54395082	rs12300425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.13		rs12300425-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1000	chr12	54395081	54395082	rs12300425	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.13		rs12300425-?	NR	1E-18		0.019004	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6	rs12822416-A	NR	1E-20		0.03523	[0.028-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6	rs12822416-A	NR	5E-21		0.035629	[0.028-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6	rs12822416-A	NR	2E-21		0.0362597	[0.029-0.044] unit decrease	Affymetrix [321114] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6	rs12822416-A	NR	2E-24		0.0389794	[0.031-0.046] unit decrease	Affymetrix [321169] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs12822416-?	NR	2E-24				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54400227	54400228	rs12822416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs12822416-?	NR	1E-27				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54417524	54417525	rs894738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	12q13.13		rs894738-A	NR	3E-8		0.0696	[0.045-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1000	chr12	54417575	54417576	rs736825	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q13.13	HOXC6	rs736825-C	0.56	8E-16		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC4, RP11-834C11.14	rs2077177-C	NR	2E-18		0.0251291	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC4, RP11-834C11.14	rs2077177-C	NR	1E-18		0.0254176	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC4, RP11-834C11.14	rs2077177-C	NR	9E-20		0.0264337	[0.021-0.032] unit increase	Affymetrix [321114] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.12, HOXC6, HOXC4, RP11-834C11.14	rs2077177-C	NR	3E-22		0.028203	[0.023-0.034] unit increase	Affymetrix [321169] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q13.13	HOXC4, RP11-834C11.14, RP11-834C11.12, HOXC6	rs2077177-T	0.5999	4E-8		0.0366	[0.023-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.13	HOXC4, RP11-834C11.14, RP11-834C11.12, HOXC6	rs2077177-T	0.5968	5E-6		0.0316	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1000	chr12	54418856	54418857	rs2077177	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.13	HOXC4, RP11-834C11.14, RP11-834C11.12, HOXC6	rs2077177-T	0.5968	5E-6		0.0316	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1000	chr12	54418919	54418920	rs754133	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and systolic blood pressure (pairwise)	365,450 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q13.13	HOXC4-HOXC6	rs754133-A	0.3588	1E-16				Affymetrix, Illumina [2331072] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs754133-A	0.3607	2E-14	(EA)	0.0295	[0.022-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs754133-A	0.3634	5E-7	(EA, men)	0.0322	[0.02-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs754133-A	0.3607	2E-12	(EA)	0.0315	[0.023-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs754133-A	0.3587	3E-8	(EA,women)	0.0314	[0.02-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs754133-?	0.3607	8E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs754133-A	0.352	8E-10	(EA, men)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54418919	54418920	rs754133	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs754133-A	0.361	2E-12	(EA, men)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54420775	54420776	rs12319419	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q13.13	HOXC4	rs12319419-C	0.36	3E-41	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54420908	54420909	rs56112137	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs56112137-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q13.13	NA	rs10876528-A	0.351	9E-39		0.0236	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	12q13.13	NR	rs10876528-A	0.351	9E-39		0.0236	[0.02-0.027] unit increase	NR [~ 27400000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-A	0.3597	2E-8	(EA, men)	0.035	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-A	0.3539	6E-7	(men)	0.0299	[0.018-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-A	0.3539	5E-13		0.0292	[0.021-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-A	0.3539	1E-8	(women)	0.0349	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-A	0.3539	4E-10		0.0292	[0.02-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-?	0.3597	4E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-?	0.3597	4E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-?	0.3539	9E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-?	0.3539	3E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421475	54421476	rs10876528	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q13.13	HOXC4, HOXC5, HOXC6	rs10876528-?	0.3539	1E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1000	chr12	54421809	54421810	rs10876529	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	12q13.13		rs10876529-C	0.37	5E-9		0.012	mmol/L decrease	NR [NR] (imputed)	N
1000	chr12	54421809	54421810	rs10876529	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	12q13.13		rs10876529-C	0.37	1E-6		0.01	nmol/L increase	NR [NR] (imputed)	N
1000	chr12	54421809	54421810	rs10876529	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q13.13		rs10876529-C	0.37	7E-20				NR [NR] (imputed)	N
1000	chr12	54421809	54421810	rs10876529	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q13.13		rs10876529-C	0.37	5E-12		0.01	% increase	NR [NR] (imputed)	N
1000	chr12	54424122	54424123	rs7308105	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Osteoporosis	5,399 European ancestry cases, 51,238 European ancestry controls	NA	12q13.13		rs7308105-C	0.3651345	5E-8		1.13		Affymetrix [15544346] (imputed)	N
1000	chr12	54424122	54424123	rs7308105	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q13.13	HOXC4	rs7308105-C	0.36704	5E-8		0.045739777	[0.029-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
1000	chr12	54424122	54424123	rs7308105	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	12q13.13	HOXC4	rs7308105-T	0.64	2E-10	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54424730	54424731	rs4759319	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q13.13	HOXC4	rs4759319-T	0.36	5E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54424730	54424731	rs4759319	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q13.13	HOXC4	rs4759319-T	0.38	4E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54424730	54424731	rs4759319	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q13.13	HOXC4	rs4759319-T	0.36	4E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54424871	54424872	rs10876530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q13.13		rs10876530-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1000	chr12	54425470	54425471	rs10747689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q13.13	NR	rs10747689-T	0.36778200000000005	5E-9		0.00722184	[0.0047-0.0097] unit increase	Affymetrix [16585854] (imputed)	N
1000	chr12	54426520	54426521	rs2630772	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	12q13.13	HOXC6	rs2630772-T		5E-6		110.21	[62.99-157.43] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12q13.13	NR	rs2071449-A	0.3514	2E-46		0.0256	[0.022-0.029] unit increase	NR [~ 27400000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q13.13	HOXC4	rs2071449-A	0.37	7E-17	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3602	1E-6	(men)	0.0259	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.36	5E-10	(AA, men)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.365	3E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3602	6E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.365	3E-12	(AA, men)	0.006	[-0.00184-0.01384] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3602	9E-9	(men)	0.0339	[0.022-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3602	6E-13		0.0285	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3602	1E-6	(women)	0.0247	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	6E-10	(men)	0.0402	[0.027-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	1E-12		0.0303	[0.022-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	9E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	5E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	3E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	6E-11	(men)	0.0366	[0.026-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	4E-14		0.0292	[0.022-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q13.13	HOXC5	rs2071449-A	0.3614	2E-6	(women)	0.0235	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3715	3E-8	(EA, men)	0.0287	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3692	3E-14	(EA)	0.0276	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.368	2E-7	(men)	0.0265	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3669	4E-8	(EA, women)	0.0265	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3637	3E-13		0.0261	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC4, HOXC6	rs2071449-A	0.3623	5E-8	(women)	0.0261	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC5	rs2071449-A	0.3693	5E-10	(EA,women)	0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC5	rs2071449-A	0.3693	2E-18	(EA)	0.0315	[0.024-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428010	54428011	rs2071449	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q13.13	HOXC5	rs2071449-A	0.3693	2E-11	(EA, men)	0.0337	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1000	chr12	54428531	54428532	rs2071450	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.13	HOXC5	rs2071450-T	0.3675	9E-19		0.0174	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1000	chr12	54428746	54428747	rs61921797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q13.13	HOXC4, RP11-834C11.14, HOXC5	rs61921797-A	NR	2E-12		0.0229224	[0.017-0.029] unit increase	Affymetrix [323858] (imputed)	N
1000	chr12	54428746	54428747	rs61921797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12q13.13	HOXC4, RP11-834C11.14, HOXC5	rs61921797-A	NR	4E-25		0.03338	[0.027-0.04] unit increase	Affymetrix [323858] (imputed)	N
1000	chr12	54429384	54429385	rs12422600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q13.13	HOXC4	rs12422600-A	NR	6E-13		0.0234525	[0.017-0.03] unit increase	Affymetrix [127266] (imputed)	N
1000	chr12	54429384	54429385	rs12422600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q13.13	HOXC4	rs12422600-A	NR	5E-22		0.0310355	[0.025-0.037] unit increase	Affymetrix [321114] (imputed)	N
1000	chr12	54429384	54429385	rs12422600	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q13.13	NR	rs12422600-G	0.6382	3E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1000	chr12	54429384	54429385	rs12422600	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q13.13	HOXC4	rs12422600-G	0.633393	2E-9		0.0125509	[0.0085-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1000	chr12	54433010	54433011	rs4759320	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q13.13	HOXC4	rs4759320-C	0.35	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54433010	54433011	rs4759320	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q13.13	HOXC4	rs4759320-C	0.35	6E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1000	chr12	54433482	54433483	rs12426667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC4	rs12426667-C	NR	7E-9		0.0178733	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1000	chr12	54433482	54433483	rs12426667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC4	rs12426667-C	NR	2E-9		0.0185291	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1000	chr12	54433482	54433483	rs12426667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q13.13	HOXC4	rs12426667-C	NR	2E-10		0.019935	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1000	chr12	54433482	54433483	rs12426667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC4	rs12426667-C	NR	1E-11		0.0211905	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
1000	chr12	54437751	54437752	rs7136889	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q13.13	HOXC4	rs7136889-T	0.6642	8E-6		0.0163	unit increase	Illumina [242296]	N
1000	chr12	54441497	54441498	rs7134677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q13.13		rs7134677-T	NR	2E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q13.13		rs7134677-T	NR	2E-11		0.0409	[0.029-0.053] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q13.13		rs7134677-T	NR	4E-11		0.0345	[0.024-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q13.13		rs7134677-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.13	HOXC4	rs7134677-T	0.2925	2E-20		0.3406	[0.27-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.13	HOXC4	rs7134677-T	0.2926	7E-10		0.1695	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q13.13	NR	rs7134677-T	0.4209	2E-8	(East Asian)	0.372	[0.24-0.5] unit decrease	Illumina [6200000] (imputed)	N
1000	chr12	54441497	54441498	rs7134677	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q13.13	NR	rs7134677-T	0.4209	5E-9	(East Asian)	0.2742	[0.18-0.37] unit decrease	Illumina [6200000] (imputed)	N
1000	chr12	54443089	54443090	rs7297416	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.13	HOXC4	rs7297416-A		3E-6		0.274	unit increase	Affymetrix [at least 2696785] (imputed)	N
1000	chr12	54443089	54443090	rs7297416	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.13	HOXC4	rs7297416-A		2E-14		0.316	unit increase	Affymetrix [at least 2696785] (imputed)	N
1000	chr12	54443089	54443090	rs7297416	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.13	HOXC4	rs7297416-A		2E-10		0.175	unit increase	Affymetrix [at least 2696785] (imputed)	N
1000	chr12	54443089	54443090	rs7297416	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q13.13	HOXC4	rs7297416-A		5E-9		0.147	unit increase	Affymetrix [at least 2696785] (imputed)	N
1000	chr12	54443717	54443718	rs10876531	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q13.13	HOXC4	rs10876531-C	0.286877	2E-9		0.040295172	[0.027-0.053] unit decrease	Affymetrix [7288503] (imputed)	N
1000	chr12	54443717	54443718	rs10876531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.13		rs10876531-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1000	chr12	54443752	54443755	rs147032598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q13.13		rs147032598-A	NR	2E-14		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1000	chr12	54449722	54449723	rs11554014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	HOXC4	rs11554014-C	NR	2E-8		0.0528795	[0.035-0.071] unit decrease	Affymetrix [319769] (imputed)	N
1000	chr12	54449722	54449723	rs11554014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	HOXC4	rs11554014-C	NR	1E-8		0.0531622	[0.035-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1000	chr12	54449722	54449723	rs11554014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q13.13	HOXC4	rs11554014-C	NR	5E-8		0.0516385	[0.033-0.07] unit decrease	Affymetrix [321169] (imputed)	N
1000	chr12	54449722	54449723	rs11554014	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs11554014-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54449722	54449723	rs11554014	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs11554014-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54458929	54458930	rs1006705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q13.13		rs1006705-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1000	chr12	54466907	54466908	rs116996456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q13.13		rs116996456-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1000	chr12	54474941	54474942	rs7315121	30373671	Hayden LP	2018-10-29	Respir Res	Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study.	Self-reported childhood asthma in adult smokers	385 European ancestry cases, 4979 European ancestry controls, 325 African American cases, 2342 African American controls	NA	12q13.13	FLJ12825	rs7315121-T	0.07	2E-7	(AA)	2.9	NR	Illumina [up to 15374350] (imputed)	N
1000	chr12	54485623	54485624	rs4016687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.13	RP11-834C11.5, RP11-834C11.6, RP11-834C11.3	rs4016687-G	0.564887	2E-21		0.022076074	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1000	chr12	54493663	54493664	rs1872632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs1872632-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54496218	54496219	rs1133773	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q13.13	LOC100240734	rs1133773-?	NR	4E-19		0.0550593	[0.043-0.067] unit increase	Illumina [4804024] (imputed)	N
1000	chr12	54496218	54496219	rs1133773	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q13.13	LOC100240734	rs1133773-?	NR	2E-10		0.0778211	[0.054-0.102] unit increase	Illumina [19707525] (imputed)	N
1000	chr12	54497115	54497116	rs143858253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs143858253-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54497115	54497116	rs143858253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs143858253-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1000	chr12	54512163	54512164	rs7137258	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q13.13	FLJ12825	rs7137258-A	0.066699	2E-12		1.12	[1.09-1.16]	NR [8126035] (imputed)	N
1000	chr12	54512163	54512164	rs7137258	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	12q13.13	FLJ12825	rs7137258-A	0.061975	4E-8		1.13	[1.08-1.19]	NR [10903881] (imputed)	N
1000	chr12	54513914	54513915	rs11170820	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	12q13.13	FLJ12825	rs11170820-G	0.058	1E-9				Affymetrix [28000000] (imputed)	N
1000	chr12	54513914	54513915	rs11170820	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q13.13	FLJ12825, LOC400043	rs11170820-C	0.9292	9E-13		0.0832	[0.06-0.106] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1000	chr12	54513914	54513915	rs11170820	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q13.13	FLJ12825, LOC400043	rs11170820-C	0.9285	1E-13		0.0969	[0.071-0.122] unit decrease	NR [8041861] (imputed)	N
1000	chr12	54513914	54513915	rs11170820	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q13.13	FLJ12825, LOC400043	rs11170820-C	0.929	1E-13		0.097	[0.072-0.122] unit decrease	Affymetrix [7947838] (imputed)	N
1000	chr12	54521593	54521594	rs75160195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q13.13		rs75160195-T	NR	7E-13		0.1138	[0.083-0.145] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1000	chr12	54521593	54521594	rs75160195	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q13.13	HOXC4, SMUG1	rs75160195-T	0.07	2E-9		1.1	[1.07-1.13]	Illumina [5167567] (imputed)	N
1001	chr12	54532118	54532119	rs73112592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q13.13	RP11-834C11.4	rs73112592-C	NR	1E-9		0.0569835	[0.039-0.075] unit increase	Affymetrix [319769] (imputed)	N
1001	chr12	54532118	54532119	rs73112592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q13.13	RP11-834C11.4	rs73112592-C	NR	3E-9		0.0556717	[0.037-0.074] unit increase	Affymetrix [319769] (imputed)	N
1001	chr12	54532336	54532337	rs2370823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.13		rs2370823-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1001	chr12	54536533	54536534	rs1872636	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.13	NR	rs1872636-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1001	chr12	54541749	54541750	rs1872635	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q13.13	NR	rs1872635-G	0.3136	1E-8		0.0282	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1001	chr12	54541927	54541928	rs11170829	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q13.13	NR	rs11170829-?	NR	7E-29				Affymetrix [NR]	N
1001	chr12	54593009	54593010	rs7966201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs7966201-C	0.353693	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
1001	chr12	54593009	54593010	rs7966201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q13.13	NR	rs7966201-C	0.312761	2E-12		0.014252	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1001	chr12	54595545	54595546	rs11834788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.13	NR	rs11834788-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1001	chr12	54614871	54614872	rs17779936	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q13.13	CBX5	rs17779936-T	0.0393	2E-6		0.1061	[0.062-0.15] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1001	chr12	54622328	54622330	rs146225704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	12q13.13		rs146225704-G	NR	2E-8		0.0223	[0.015-0.03] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1001	chr12	54630516	54630517	rs4759348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.13	CBX5	rs4759348-T	0.715897	2E-10		0.022232465	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1001	chr12	54635733	54635734	rs12809801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.13		rs12809801-A	0.959	8E-9				Affymetrix [10369434] (imputed)	N
1001	chr12	54649977	54649978	rs79880068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q13.13	NR	rs79880068-T	NR	6E-17		0.0335	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1001	chr12	54653257	54653258	rs4759073	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q13.13	CBX5	rs4759073-G	0.590095	2E-11		0.00934791	[0.0066-0.0121] unit increase	Affymetrix [12370749]	N
1001	chr12	54655471	54655471	rs59957074	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12q13.13	CBX5	rs59957074-T	0.589118	1E-8		0.0116709	[0.0076-0.0158] unit decrease	NR [16516521] (imputed)	N
1002	chr12	54660426	54660427	rs57281063	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	12q13.13	CBX5, RP11-968A15.2	rs57281063-A	0.41	8E-11		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1002	chr12	54664096	54664097	rs4759074	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q13.13	CBX5, HNRNPA1, NFE2, COPZ1	rs4759074-?	NR	2E-9		0.0147949	[0.01-0.0196] unit decrease	Affymetrix [25921788] (imputed)	N
1002	chr12	54667284	54667285	rs4759075	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.13	NR	rs4759075-C	0.4163	5E-9				NR [9056863] (imputed)	N
1002	chr12	54668907	54668908	rs17110109	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.13	NR	rs17110109-C	0.388956	9E-10		0.0193753	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1002	chr12	54668907	54668908	rs17110109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.13	Intergenic	rs17110109-T	0.6323	2E-11	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr12	54668907	54668908	rs17110109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.13		rs17110109-T	0.6163	1E-10		0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1002	chr12	54668907	54668908	rs17110109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.13	Intergenic	rs17110109-T	0.6163	4E-13	(MTAG)	0.0098	[0.0073-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1002	chr12	54670054	54670055	rs1920046	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.13		rs1920046-C	0.39	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1002	chr12	54670879	54670880	rs4237798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.13		rs4237798-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1002	chr12	54671265	54671266	rs140606728	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.13		rs140606728-G	0.981	4E-12				Affymetrix [10369434] (imputed)	N
1002	chr12	54674234	54674235	rs3809162	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	12q13.13	NR	rs3809162-G	0.397	1E-9		0.009060925	[0.0061-0.012] unit increase	NR [~ 10000000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	12q13.13		rs35979828-T	0.08451	1E-12		0.242664	[0.18-0.31] unit decrease	Illumina [7506463] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	12q13.13		rs35979828-T	0.08451	5E-16		0.276049	[0.21-0.34] unit decrease	Illumina [7506463] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q13.13		rs35979828-T	NR	3E-14		0.0347	[0.026-0.044] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q13.13		rs35979828-T	NR	1E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q13.13		rs35979828-C	0.931	2E-32		0.26	[-0.3--0.22] % decrease	Affymetrix [NR] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.08549	2E-11		0.0340757	[0.024-0.044] unit decrease	Affymetrix [3505788] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069896	4E-85		0.0852868	[0.077-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069908	2E-25		0.045409672	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.06989	1E-25		0.045420468	[0.037-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069873	4E-74		0.07992658	[0.071-0.089] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069877	8E-23		0.04325845	[0.035-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0692390000000001	3E-28		0.04987853	[0.041-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0698530000000001	7E-46		0.0609233	[0.053-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069846	1E-24		0.044391185	[0.036-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.069842	4E-17		0.036505412	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0698530000000001	4E-17		0.03641121	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.0685503	9E-32				Affymetrix, Illumina [23467995] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.070849	1E-35		0.046061	[0.039-0.053] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.070802	1E-61		0.059508	[0.052-0.067] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.0677208	4E-26				Affymetrix, Illumina [20825802] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.067979	1E-16				Affymetrix, Illumina [19872809] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q13.13	NR	rs35979828-T	0.07029	3E-17		0.032839	[0.025-0.04] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.13		rs35979828-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.13		rs35979828-?	NR	9E-27				NR [~ 8900000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.13		rs35979828-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q13.13	NFE2	rs35979828-T	NR	3E-21		0.0736574	[0.058-0.089] unit decrease	Affymetrix [16832071] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0705	7E-22		0.06651335	[0.053-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0704	8E-13		0.04991437	[0.036-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0704	3E-9		0.04149626	[0.028-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0698	6E-52		0.1072094	[0.093-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0704	2E-18		0.06048055	[0.047-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0705	4E-10		0.0431627	[0.03-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54685879	54685880	rs35979828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q13.13	RP11-968A15.8	rs35979828-T	0.0704	2E-11		0.04664952	[0.033-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54687231	54687232	rs10506328	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	12q13.13	COPZ1, NFE2	rs10506328-C	0.64	2E-9		0.09	[NR] unit decrease	Illumina [476395]	N
1002	chr12	54687231	54687232	rs10506328	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	12q13.13	NR	rs10506328-A	NR	5E-7		0.01	[0.004-0.012] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1002	chr12	54687488	54687489	rs7304860	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	12q13.13		rs7304860-T	0.7841	2E-6		0.1077	[0.064-0.152] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1002	chr12	54687488	54687489	rs7304860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs7304860-T	0.344188	3E-379				Affymetrix, Illumina [17210439] (imputed)	N
1002	chr12	54688633	54688634	rs34094446	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q13.13		rs34094446-G	0.946	4E-10				Affymetrix [10369434] (imputed)	N
1002	chr12	54688633	54688634	rs34094446	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.13		rs34094446-G	0.946	8E-20				Affymetrix [10369434] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I13	5,353 Icelandic ancestry individuals	NA	12q13.13		rs79977579-A	0.08434	3E-13		0.240257	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099272	2E-24		0.038519863	[0.031-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.0992690000000001	4E-19		0.03369442	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099533	1E-11		0.02676381	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099533	5E-31		0.045612834	[0.038-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099318	1E-34		0.04633761	[0.039-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099287	1E-14		0.0284772	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q13.13	RP11-968A15.8, NFE2	rs79977579-A	0.099332	8E-10		0.023061406	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs79977579-A	0.096082	8E-15				Affymetrix, Illumina [21126107] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q13.13	NR	rs79977579-A	0.099105	1E-17		0.028953	[0.022-0.036] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1002	chr12	54694559	54694560	rs79977579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q13.13	NR	rs79977579-A	0.098283	5E-18		0.027065	[0.021-0.033] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q13.13		rs79755767-A	NR	1E-20		0.036	[0.028-0.044] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs79755767-A	0.099675	7E-146		0.09648248	[0.089-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs79755767-A	0.099913	8E-78		0.07052195	[0.063-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs79755767-G	0.904325	8E-157				Affymetrix, Illumina [22063850] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q13.13	NR	rs79755767-G	0.90111	2E-161		0.086231	[0.08-0.092] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs79755767-A	0.095621	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.13		rs79755767-?	NR	4E-134				NR [~ 8900000] (imputed)	N
1002	chr12	54698407	54698408	rs79755767	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q13.13	NR	rs79755767-A	NR	9E-30		0.075313	[0.062-0.088] unit decrease	Affymetrix [16832071] (imputed)	N
1002	chr12	54702518	54702519	rs7299922	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q13.13		rs7299922-A	0.6334	9E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1002	chr12	54702518	54702519	rs7299922	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q13.13	NFE2, COPZ1	rs7299922-A	0.6388	5E-11		1.0241879		Affymetrix [11880941] (imputed)	N
1002	chr12	54711573	54711574	rs11559982	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	12q13.13		rs11559982-G	0.670547	3E-15		3.2783058	[2.47-4.09] unit increase	NR [NR]	N
1002	chr12	54711573	54711574	rs11559982	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q13.13		rs11559982-A	0.444	3E-40				Affymetrix [10369434] (imputed)	N
1002	chr12	54711573	54711574	rs11559982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12q13.13	RNU6-950P	rs11559982-G	0.5581	7E-42		0.04917446	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54711573	54711574	rs11559982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.13	RNU6-950P	rs11559982-G	0.5575	2E-54		0.05706259	[0.05-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL28	5,367 Icelandic ancestry individuals	NA	12q13.13		rs10876550-G	0.4341	1E-17		0.164226	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q13.13		rs10876550-A	NR	5E-121		0.0458	[0.042-0.05] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q13.13		rs10876550-A	0.711727	5E-17		0.0305539	[0.023-0.038] unit increase	Illumina [13478928] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.13		rs10876550-G	0.441	1E-78				Affymetrix [10369434] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	12q13.13		rs10876550-A	0.58	7E-7		0.0443	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs10876550-A	0.561105	5E-74		0.058480628	[0.052-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs10876550-A	0.561089	3E-57		0.061922465	[0.054-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.13	NR	rs10876550-A	0.599719	1E-194				Affymetrix, Illumina [24588908] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.13	NR	rs10876550-A	0.561118	2E-177		0.05248	[0.049-0.056] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	12q13.13	NR	rs10876550-G	0.295497	1E-14		0.031165	[0.023-0.039] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	12q13.13	NR	rs10876550-G	0.250031	2E-10		0.113998	[0.079-0.149] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q13.13	NFE2, COPZ1	rs10876550-?	NR	3E-13		0.03377	[0.025-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1002	chr12	54712307	54712308	rs10876550	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	12q13.13	COPZ1, NFE2, CBX5	rs10876550-G	NR	2E-14		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1002	chr12	54715784	54715784	rs11451044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs11451044-CA	0.559662	1E-18		0.019593706	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54715784	54715784	rs11451044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs11451044-CA	0.561862	5E-65		0.040376935	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54715784	54715784	rs11451044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs11451044-CA	0.559653	9E-13		0.016037427	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54715784	54715784	rs11451044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs11451044-CA	0.5588	1E-10		0.02301627	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54717508	54717508	rs60822569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs60822569-TTTCTC	0.5568	2E-152		0.09577107	[0.089-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1002	chr12	54719688	54719689	rs7297265	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC1B	5,357 Icelandic ancestry individuals	NA	12q13.13		rs7297265-G	0.4656	7E-15		0.145439	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1002	chr12	54719688	54719689	rs7297265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.13	NR	rs7297265-A	0.555801	2E-415		0.083267	[0.08-0.087] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1002	chr12	54719688	54719689	rs7297265	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12q13.13	NR	rs7297265-?	NR	9E-7		0.0506	[0.03-0.071] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1002	chr12	54722059	54722059	rs35785237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q13.13		rs35785237-CA	NR	5E-12		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1002	chr12	54723027	54723028	rs6580981	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12q13.13	NR	rs6580981-A	0.4584	5E-14		0.00176	[0.0013-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1002	chr12	54723027	54723028	rs6580981	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12q13.13	NR	rs6580981-A	NR	2E-13		0.0186	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1002	chr12	54725249	54725250	rs574708537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.13		rs574708537-G	NR	2E-9		0.1159	[0.078-0.154] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1002	chr12	54725249	54725250	rs574708537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q13.13		rs574708537-G	0.003309	2E-9		0.115948	[0.078-0.154] unit decrease	Illumina [13479295] (imputed)	N
1002	chr12	54729871	54729872	rs4759076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs4759076-C	0.459174	3E-18		0.0333854	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr12	54729871	54729872	rs4759076	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.13	NR	rs4759076-T	0.52625	9E-11	(CLEC1B, 4332_6_2)	0.16342555	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr12	54729871	54729872	rs4759076	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.13	NR	rs4759076-T	0.52625	1E-9	(COCH, 7227_75_3)	0.1520429	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1002	chr12	54729871	54729872	rs4759076	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q13.13	COPZ1	rs4759076-C	0.449	5E-16	(C-C motif chemokine 28, CCL28.2890.59.2)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr12	54733728	54733741	rs147371771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.13	COPZ1, RP11-968A15.8	rs147371771-T	0.100734	1E-15		0.029950075	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54736469	54736470	rs4326844	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	12q13.13	NR	rs4326844-?	NR	4E-7		3.175556	[1.94-4.41] unit increase	Illumina [30743395] (imputed)	N
1002	chr12	54736469	54736470	rs4326844	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	12q13.13	COPZ1	rs4326844-A	0.4493	5E-8	(EA)	8.679	[5.57-11.79] unit decrease	Illumina [544917]	N
1002	chr12	54749138	54749138	rs5798300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.13	RP11-753H16.3, RP11-753H16.5	rs5798300-AGT	0.39295	2E-9		0.014134131	[0.0095-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr12	54749193	54749193	rs150158762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q13.13		rs150158762-AT	NR	2E-11		0.0222	[0.016-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1002	chr12	54772095	54772096	rs2605490	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q13.13	NR	rs2605490-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1003	chr12	54811707	54811708	rs11170895	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12q13.13		rs11170895-T	0.077929	8E-7		0.062848	[0.038-0.088] unit decrease	Affymetrix [15580782] (imputed)	N
1003	chr12	54884201	54884202	rs61923480	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	12q13.13	NR	rs61923480-C	0.02	4E-7		2.52	unit increase	Illumina [8591557] (imputed)	N
1003	chr12	54909143	54909144	rs1629826	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.2	NCKAP1L	rs1629826-G	0.319	3E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1004	chr12	54927243	54927244	rs76664911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q13.2	NCKAP1L	rs76664911-A	0.8844	8E-6		0.058	[0.033-0.083] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr12	54959671	54959672	rs118009632	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q13.2	PDE1B	rs118009632-T	0.015	2E-6		0.212	NR unit increase	Illumina [NR] (imputed)	N
1004	chr12	54979392	54979393	rs1144998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.2	PPP1R1A	rs1144998-C	0.5749	6E-6		0.0307	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr12	54979392	54979393	rs1144998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q13.2	PPP1R1A	rs1144998-C	0.5749	6E-6		0.0307	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr12	54979392	54979393	rs1144998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q13.2	PPP1R1A	rs1144998-C	0.5761	3E-6		0.0382	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr12	54981126	54981127	rs11170981	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12q13.2	PPP1R1A	rs11170981-T	0.4511	8E-6		0.0523	[0.029-0.075] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1005	chr12	55098995	55098996	rs1153188	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	12q13.2	DCD	rs1153188-A	0.73	2E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [2202892] (imputed)	N
1006	chr12	55188939	55188940	rs11171076	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q13.2	NR	rs11171076-C	0.233	3E-7	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1007	chr12	55356837	55356838	rs183884396	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	12q13.2	NR	rs183884396-a	0.0023	2E-10		1.86	[1.54-2.26]	Affymetrix, Illumina [16201029] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q13.2	TESPA1	rs62623446-T	0.06834700000000005	6E-9		1.0713284	[1.0467025768701-1.09653363741699]	NR [9572556] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q13.2	NR	rs62623446-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q13.2	NR	rs62623446-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q13.2	NR	rs62623446-T	0.07213	1E-11		1.08	[1.057-1.103]	Affymetrix [15688218] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q13.2	TESPA1, MUCL1, NEUROD4	rs62623446-T	0.072	1E-10		1.188	[1.127-1.252]	Affymetrix [10894596] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q13.2	TESPA1	rs62623446-?	NR	8E-13		1.119	[1.09-1.15]	Affymetrix [9000000] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.2	TESPA1	rs62623446-T	NR	2E-9		1.082	[1.06-1.11]	Affymetrix [9000000] (imputed)	N
1007	chr12	55368290	55368291	rs62623446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q13.2		rs62623446-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1007	chr12	55419130	55419131	rs188928429	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	12q13.2	NEUROD4	rs188928429-?	NR	3E-6		3.78		Illumina [6778521] (imputed)	N
1007	chr12	55424915	55424916	rs1386809	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q13.2	NR	rs1386809-C	0.284827378378378	7E-6	(IGP20)	0.1576	[0.089-0.226] unit increase	Illumina [~ 2500000] (imputed)	N
1008	chr12	55451693	55451694	rs11833289	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	12q13.2	OR9K2, NEUROD4	rs11833289-?	0.0	1E-10				Affymetrix [547296]	N
1008	chr12	55515949	55515950	rs180870215	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	12q13.2	NR	rs180870215-?	NR	9E-7		0.733526	[0.44-1.03] unit decrease	NR [13958389] (imputed)	N
1008	chr12	55540333	55540334	rs34260065	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	12q13.2	NR	rs34260065-C		4E-7	(Hispanic/Latino)	0.12	[0.042-0.198] unit increase	Illumina [NR] (imputed)	N
1009	chr12	55631567	55631568	rs11171380	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	12q13.2	NR	rs11171380-?		3E-6				Illumina [892589]	N
1011	chr12	55863223	55863224	rs60683621	33035477	Gisladottir RS	2020-09-25	Curr Biol	Sequence Variants in TAAR5 and Other Loci Affect Human Odor Perception and Naming.	Odorant perception	9,122 Icelandic ancestry individuals	2,204 Icelandic ancestry individuals	12q13.2	OR6C70	rs60683621-G	0.233	9E-16	(Licorice intensity)	0.13	[0.10-0.16] unit increase	Illumina [36500000] (imputed)	N
1011	chr12	55863223	55863224	rs60683621	33035477	Gisladottir RS	2020-09-25	Curr Biol	Sequence Variants in TAAR5 and Other Loci Affect Human Odor Perception and Naming.	Odorant perception	9,122 Icelandic ancestry individuals	2,204 Icelandic ancestry individuals	12q13.2	OR6C70	rs60683621-G	0.233	1E-9	(Licorice naming problem)	0.78	[0.72-0.84]	Illumina [36500000] (imputed)	N
1011	chr12	55916779	55916780	rs12230513	24152035	Goodbourn PT	2013-10-23	Genes Brain Behav	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	NA	12q13.2	OR6C4, OR10P1, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68	rs12230513-?	0.1822	5E-6		2.69	[NR] unit decrease	Illumina [642758]	N
1011	chr12	55936703	55936704	rs138077956	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroid stimulating hormone levels	626 Croatian individuals, 509 Korculan (founder/genetic isolate) individuals, 596 Vis (founder/genetic isolate) individuals	NA	12q13.2	OR6C4	rs138077956-T	0.02	1E-7		0.68	[0.43-0.93] mIU/L increase	Illumina [7411206] (imputed)	N
1012	chr12	55971206	55971207	rs117404771	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q13.2	OR2AP1	rs117404771-T	0.0219779931353037	8E-6	(G_Odoribacter_HB)	1.19494	[0.67-1.72] unit decrease	Illumina [7711310] (imputed)	N
1012	chr12	56022982	56022983	rs17117817	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers	426 European American hypertensive individuals, 273 African American hypertensive individuals	200 European American hypertensive individuals, 168 African American hypertensive individuals	12q13.2	OR10P1	rs17117817-G	NR	2E-9	(AA)	5.53	NR bpm decrease	Illumina [at least 1100000] (imputed)	N
1012	chr12	56035608	56035609	rs114452062	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	12q13.2	NR	rs114452062-A	0.9224	5E-7		1.8162	[1.11-2.53] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1012	chr12	56052866	56052867	rs941024	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	12q13.2	intergenic	rs941024-?	NR	8E-6		1.380868	[1.198761-1.590639]	Illumina [at least 4756722] (imputed)	N
1012	chr12	56055814	56055815	rs11614818	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q13.2	NACA	rs11614818-C	0.363	2E-8		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1012	chr12	56070667	56070668	rs55874825	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	12q13.2	intergenic	rs55874825-?	NR	3E-7	(SF5)			Affymetrix [5476100] (imputed)	N
1012	chr12	56091031	56091032	rs143053231	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q13.2	ITGA7	rs143053231-G	1.0	1E-6	(AA)	0.415	unit increase	Illumina [NR] (imputed)	N
1013	chr12	56101080	56101081	rs3844368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q13.2		rs3844368-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1013	chr12	56114768	56114769	rs3138144	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q13.2	NR	rs3138144-C	0.4614	8E-14		0.1165	[0.086-0.147] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1013	chr12	56114768	56114769	rs3138144	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q13.2	NR	rs3138144-C	0.4596	5E-12	(EA)	0.1141	[0.082-0.146] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1013	chr12	56114768	56114769	rs3138144	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	12q13.2	RDH5	rs3138144-C	0.48	4E-12		0.119	[0.086-0.152] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12q13.2		rs3138142-T	0.2415	3E-6		0.037148	[0.022-0.053] unit increase	Affymetrix [15580782] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinal detachment	6,591 European ancestry cases, 470,440 European ancestry controls, 1,389 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	12q13.2		rs3138142-T	NR	5E-8		0.1184	[0.076-0.161] unit decrease	Affymetrix, Illumina [25843609] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12q13.2	NR	rs3138142-?	NR	4E-19		0.210541	[0.16-0.26] unit decrease	NR [13958389] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	12q13.2	NR	rs3138142-?	NR	2E-12		0.140075	[0.1-0.18] unit increase	NR [13958389] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q13.2	NR	rs3138142-?	NR	7E-12		0.226326	[0.16-0.29] unit decrease	NR [13958389] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12q13.2	NR	rs3138142-T		2E-57		0.21	[0.19-0.23] unit increase	NR [NR]	N
1013	chr12	56115584	56115585	rs3138142	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q13.2	CBX5, COPZ1, NEUROD4, OR9K2, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4, METTL7B, ITGA7, BLOC1S1, BLOC1S1-RDH5, CD63, GDF11, DNAJC14, ORMDL2, MMP19, WIBG, DGKA, PMEL, CDK2, RAB5B, SUOX, IKZF4, RPS26, ERBB3, PA2G4, ESYT1, SMARCC2, NABP2, SLC39A5, ANKRD52, COQ10A, CS, CNPY2, PAN2, IL23A, STAT2, TIMELESS, SDR9C7, RDH16, GPR182, STAT6, LRP1, R3HDM2, CTDSP2	rs3138142-?		6E-174				Affymetrix, Illumina [NR] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	12q13.2	RDH5	rs3138142-C	0.752	7E-12		1.258091	[1.181259-1.339921]	Affymetrix [NR] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q13.2	RDH5	rs3138142-?	NR	9E-105		1.693	[1.54-1.85] unit decrease	Affymetrix [11100000] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	12q13.2	RDH5	rs3138142-T	0.2	4E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1013	chr12	56115584	56115585	rs3138142	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	12q13.2	RDH5	rs3138142-T	0.2	1E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
1013	chr12	56115777	56115778	rs3138141	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q13.2	BLOC1S1-RDH5, RDH5	rs3138141-A	0.214	2E-43		13.803	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1013	chr12	56115777	56115778	rs3138141	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	12q13.2	NR	rs3138141-A	0.2244	4E-42		0.1201	[0.1-0.14] unit increase	Illumina [~ 10600000] (imputed)	N
1013	chr12	56115777	56115778	rs3138141	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	12q13.2	RDH5	rs3138141-?	NR	2E-51		1.146	[1.126-1.167]	Illumina [13762925] (imputed)	N
1013	chr12	56115777	56115778	rs3138141	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	12q13.2	RDH5, CD63, MMP19	rs3138141-?	NR	4E-9	(EA)	1.16		Illumina [12023830] (imputed)	N
1013	chr12	56119243	56119244	rs4759190	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	12q13.2	CD63	rs4759190-G		3E-7		0.356	[NR] unit increase	Illumina [24111857] (imputed)	N
1013	chr12	56154967	56154968	rs143118162	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.2	SARNP	rs143118162-A		6E-7		5.004	unit increase	Affymetrix [at least 2696785] (imputed)	N
1013	chr12	56154967	56154968	rs143118162	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q13.2	SARNP	rs143118162-A		4E-8		3.643	unit increase	Affymetrix [at least 2696785] (imputed)	N
1013	chr12	56180763	56180764	rs1681087	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	12q13.2	SARNP	rs1681087-A	0.053	3E-6	(EA)	1.7	[1.4-2.1]	Illumina [5784964] (imputed)	N
1013	chr12	56193232	56193233	rs11171681	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	12q13.2	NR	rs11171681-C	NR	2E-6		0.02399	[0.014-0.034] unit decrease	Illumina [~ 540852]	N
1014	chr12	56274154	56274155	rs193047854	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	12q13.2	Intergenic	rs193047854-T	0.97	6E-7	(AA)			Illumina [NR] (imputed)	N
1014	chr12	56300137	56300138	rs77858935	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12q13.2	NR	rs77858935-?	NR	2E-6		0.406608	[0.24-0.57] unit decrease	NR [13958389] (imputed)	N
1014	chr12	56344070	56344070	rs577528770	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	12q13.2	NR	rs577528770-?	NR	9E-7		0.315066	[0.19-0.44] unit increase	NR [13958389] (imputed)	N
1014	chr12	56359084	56359085	rs12309895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PMEL	5,363 Icelandic ancestry individuals	NA	12q13.2		rs12309895-A	0.09609	4E-22		0.30619	[0.24-0.37] unit increase	Illumina [7506463] (imputed)	N
1015	chr12	56363665	56363666	rs3213122	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.2	PMEL	rs3213122-C	0.90796875	2E-13	(PMEL, 6472_40_3)	0.30150655	[0.22-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
1015	chr12	56364320	56364321	rs2069408	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	12q13.2	CDK2	rs2069408-C	0.23	1E-10		1.15	[1.10-1.20]	Illumina [458847]	N
1015	chr12	56367965	56367966	rs80223410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.2		rs80223410-T	0.1426	9E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr12	56368077	56368078	rs11171710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q13.2		rs11171710-A	NR	3E-12		0.0698	[0.05-0.089] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1015	chr12	56368077	56368078	rs11171710	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q13.2	RAB5B	rs11171710-G	0.551858	4E-9		0.0113701	[0.0076-0.0152] unit increase	Affymetrix [NR] (imputed)	N
1015	chr12	56368077	56368078	rs11171710	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	12q13.2	RAB5B, SUOX, CDK2	rs11171710-A	NR	1E-8		1.032724	[1.02-1.04]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1015	chr12	56368077	56368078	rs11171710	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	12q13.2	RAB5B	rs11171710-A	0.447089	3E-9		0.046545744	[0.031-0.062] unit increase	Affymetrix [7288503] (imputed)	N
1015	chr12	56369505	56369506	rs773107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	12q13.2		rs773107-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1015	chr12	56375136	56375137	rs773110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.2		rs773110-?	NR	4E-31				NR [~ 8900000] (imputed)	N
1015	chr12	56379059	56379060	rs773114	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	12q13.2	RAB5B	rs773114-T	0.423641	5E-7		0.00461363	[0.0028-0.0064] unit increase	Affymetrix [9463307] (imputed)	N
1015	chr12	56379426	56379427	rs1873914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q13.2		rs1873914-C	NR	3E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1015	chr12	56379426	56379427	rs1873914	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	12q13.2	NR	rs1873914-G	0.58	5E-8		1.03		NR [8546065] (imputed)	N
1015	chr12	56384803	56384804	rs705699	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q13.2	RAB5B	rs705699-G	0.58	8E-11		6.5	z-score increase	Affymetrix [4314223] (imputed)	N
1015	chr12	56384803	56384804	rs705699	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	12q13.2	RAB5B	rs705699-A	0.432	6E-9		0.024	[0.016-0.032] unit decrease	NR [NR] (imputed)	N
1015	chr12	56384803	56384804	rs705699	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	12q13.2	RAB5B	rs705699-A	0.432	4E-9		0.025	[0.017-0.033] unit decrease	NR [7647814] (imputed)	N
1015	chr12	56384803	56384804	rs705699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q13.2	NR	rs705699-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56384803	56384804	rs705699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q13.2	NR	rs705699-?	NR	9E-17				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56384803	56384804	rs705699	31152121	Zhu M	2019-05-31	Diabetes Care	Identification of Novel T1D Risk Loci and Their Association With Age and Islet Function at Diagnosis in Autoantibody-Positive T1D Individuals: Based on a Two-Stage Genome-Wide Association Study.	Type 1 diabetes	1,005 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	1,378 Han Chinese ancestry cases, 3,774 Han Chinese ancestry controls	12q13.2	SUOX	rs705699-T	0.26	7E-20		1.46	[1.34-1.58]	Illumina [787224] (imputed)	N
1015	chr12	56384803	56384804	rs705699	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q13.2	RAB5B, CDK2, SUOX	rs705699-A	0.425	1E-11		1.106	[1.074-1.139]	Affymetrix [10894596] (imputed)	N
1015	chr12	56384803	56384804	rs705699	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	12q13.2	RAB5B, CDK2, SUOX	rs705699-A	0.425	6E-7		1.052	[1.031-1.072]	Affymetrix [10894596] (imputed)	N
1015	chr12	56384803	56384804	rs705699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	12q13.2	RAB5B	rs705699-A	0.4215	5E-12		0.02494924	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr12	56385578	56385579	rs11611029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	12q13.2		rs11611029-T	NR	3E-8		0.0316	[0.02-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1015	chr12	56385578	56385579	rs11611029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q13.2		rs11611029-T	NR	1E-8		0.0958	[0.063-0.129] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
1015	chr12	56389292	56389293	rs705700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	12q13.2	NR	rs705700-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56389292	56389293	rs705700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	12q13.2	NR	rs705700-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56389292	56389293	rs705700	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	12q13.2	CDK2, ERBB3, ESYT1, IKZF4, MYL6, MYL6B, PA2G4, PMEL, RAB5B, RNF41, RPL41, RPS26, SMARCC2, SUOX, ZC3H10	rs705700-C	0.424351	1E-16		1.052876	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
1015	chr12	56389292	56389293	rs705700	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q13.2	RAB5B	rs705700-?	NR	3E-24		1.078	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1015	chr12	56389292	56389293	rs705700	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.2	RAB5B	rs705700-C	NR	4E-23		1.07	[1.06-1.08]	Affymetrix [9000000] (imputed)	N
1015	chr12	56390363	56390364	rs772920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q13.2		rs772920-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1015	chr12	56390363	56390364	rs772920	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q13.2	RAB5B	rs772920-C	0.72	2E-8		13.86	[8.98-18.74] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1015	chr12	56390635	56390636	rs705702	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	12q13.2	RAB5B, SUOX	rs705702-G	0.245	9E-26		1.27	[NR]	Affymetrix [NR] (imputed)	N
1015	chr12	56394953	56394954	rs773125	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q13.2	CDK2	rs773125-A	NR	1E-9		0.0858945	[0.058-0.113] unit increase	Illumina [8380626] (imputed)	N
1015	chr12	56394953	56394954	rs773125	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q13.2	CDK2	rs773125-A	0.59	9E-8	(EA)	0.08492	[0.054-0.116] unit increase	Illumina [8380626] (imputed)	N
1015	chr12	56394953	56394954	rs773125	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q13.2	CDK2	rs773125-A	0.65	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1015	chr12	56394953	56394954	rs773125	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q13.2	CDK2	rs773125-A	0.6	2E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	12q13.2		rs1689510-C	NR	5E-14		0.0727	[0.054-0.092] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.2	SUOX	rs1689510-C	0.338301	1E-35		0.029166074	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q13.2	SUOX	rs1689510-C	0.338331	1E-31		0.027296945	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.2	NR	rs1689510-C	0.308655	9E-37				Affymetrix, Illumina [19872809] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q13.2	NR	rs1689510-C	0.337746	1E-36		0.026511	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q13.2	SUOX	rs1689510-C	0.33	2E-31				NR [> 9500000] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q13.2	NR	rs1689510-C	0.3398	2E-19		1.058	[1.045-1.07]	Affymetrix [15688218] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	12q13.2	NR	rs1689510-?	NR	3E-20	(conditional)			Affymetrix [15688218] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	12q13.2	SUOX	rs1689510-C	0.338025	1E-11		0.08053317	[0.057-0.104] unit increase	Affymetrix [7288503] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q13.2	RAB5B	rs1689510-C	0.3373	8E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix [19819130] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q13.2	RAB5B	rs1689510-C	0.3373	6E-10		0.0153	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	12q13.2		rs1689510-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q13.2		rs1689510-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.2		rs1689510-C	0.3315	1E-38		0.0194	[0.016-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.2	Intergenic	rs1689510-C	0.3315	3E-46	(MTAG)	0.0198	[0.017-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr12	56396767	56396768	rs1689510	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	12q13.2	SUOX	rs1689510-C	0.31	4E-9				Illumina [7347414] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q13.2		rs10876864-A	NR	2E-18		0.0148	[0.011-0.018] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	12q13.2	NR	rs10876864-G	0.408549	7E-9		0.03692853	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12q13.2	NR	rs10876864-?		1E-9		0.0133403	[0.0091-0.0176] unit decrease	Affymetrix [19400418] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q13.2	IKZF4	rs10876864-A	0.4304	8E-14		0.015240807	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.2	NR	rs10876864-A	0.573719	6E-9		0.0403741	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	12q13.2	CDK2, ERBB3, IKZF4, PA2G4, RAB5B, RPL41, RPS26, SUOX, ZC3H10	rs10876864-?	NR	1E-13		1.05		NR [74888535] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q13.2	SUOX, IKZF4	rs10876864-A	NR	2E-12		0.020769933	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1015	chr12	56401084	56401085	rs10876864	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q13.2	SUOX, IKZF4	rs10876864-G	0.39	1E-19		1.047	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	12q13.2	IKZF4	rs10876864-A	0.5741	7E-11		0.02350376	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	12q13.2	IKZF4	rs10876864-A	0.5742	4E-14		0.02717649	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	12q13.2	IKZF4	rs10876864-A	0.5741	1E-11		0.02438939	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1015	chr12	56401084	56401085	rs10876864	22951725	Tang XF	2012-09-06	J Invest Dermatol	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	12q13.2	PMEL, DGKA, CDK2, RAB5B, ZNFN1A4, PA2G4, SUOX, RPS26, ERBB3	rs10876864-G	0.24	8E-12		1.18	[1.13-1.24]	Illumina [493909]	N
1015	chr12	56403576	56403577	rs772921	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q13.2	IKZF4	rs772921-T	0.3415	4E-9		0.012490748	[0.0083-0.0166] unit decrease	Affymetrix [11514654] (imputed)	N
1015	chr12	56403576	56403577	rs772921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q13.2		rs772921-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1015	chr12	56403576	56403577	rs772921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.2		rs772921-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1015	chr12	56407071	56407072	rs2017445	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	12q13.2	IKZF4	rs2017445-A	0.3311	7E-31		1.333	[1.27-1.40]	Illumina [8966411] (imputed)	N
1015	chr12	56408313	56408314	rs137948794	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q13.2	NR	rs137948794-?	NR	2E-8	(Latino)	0.8728	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1015	chr12	56412486	56412487	rs1701704	32700739	Salinas YD	2020-07-23	Am J Epidemiol	Discovery and Mediation Analysis of Cross-Phenotype Associations With Asthma and Body Mass Index in 12q13.2.	Asthma	35,373 British ancestry cases,  270,572 British ancestry controls	NA	12q13.2	IKZF4	rs1701704-G	0.3433	2E-14		1.07	[1.05-1.09]	Affymetrix [528797]	N
1015	chr12	56412486	56412487	rs1701704	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q13.2	IKZF4	rs1701704-G	0.341	3E-8		0.0126	[0.0082-0.017] unit decrease	Illumina [~ 250000] (imputed)	N
1015	chr12	56412486	56412487	rs1701704	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	12q13.2	NR	rs1701704-G	0.334	4E-11		0.0102015	[0.0072-0.0132] unit increase	NR [9732723] (imputed)	N
1015	chr12	56412486	56412487	rs1701704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q13.2		rs1701704-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1015	chr12	56412486	56412487	rs1701704	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	12q13.2	IKZF4	rs1701704-T	NR	5E-18		1.25	[NR]	Affymetrix, Illumina [NR]	N
1015	chr12	56412486	56412487	rs1701704	21804548	Hirota T	2011-07-31	Nat Genet	Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population.	Asthma	1,532 Japanese ancestry cases, 3,304 Japanese ancestry controls	5,639 Japanese ancestry cases, 24,608 Japanese ancestry controls	12q13.2	IKZF4	rs1701704-G	0.18	2E-13		1.19	[1.14-1.25]	Illumina [458847]	N
1015	chr12	56412486	56412487	rs1701704	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	12q13.2	IKZF4	rs1701704-C	0.33	3E-8		1.34	[1.21-1.48]	Illumina [463301]	N
1015	chr12	56412486	56412487	rs1701704	18198356	Hakonarson H	2008-01-15	Diabetes	A novel susceptibility locus for type 1 diabetes on Chr12q13 identified by a genome-wide association study.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	946 European ancestry cases and 1,098 European ancestry controls from 549 families, 364 European ancestry trios	12q13.2	CDK2, RAB5B, SUOX, IKZF4, ERBB3	rs1701704-C	0.35	9E-10		1.25	[1.12-1.40]	Illumina [543071]	N
1015	chr12	56416927	56416928	rs2456973	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12q13.2		rs2456973-A	0.6791	2E-11		56.384483	z score increase	NR [6814003]	N
1015	chr12	56416927	56416928	rs2456973	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	12q13.2	IKZF4	rs2456973-?	NR	1E-8		5.734	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1015	chr12	56416927	56416928	rs2456973	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	12q13.2	NR	rs2456973-A	0.6663	6E-16		0.019068427	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1015	chr12	56416927	56416928	rs2456973	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	12q13.2	NR	rs2456973-?	0.3306	2E-9		1.0380125	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1015	chr12	56416927	56416928	rs2456973	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	12q13.2	IKZF4	rs2456973-C	0.35	3E-14		1.29	[NR]	Illumina [495821]	N
1015	chr12	56422639	56422642	rs34813703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q13.2		rs34813703-C	NR	1E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1015	chr12	56427807	56427808	rs1702877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	12q13.2		rs1702877-T	NR	6E-10		0.0602	[0.041-0.079] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1015	chr12	56427807	56427808	rs1702877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	12q13.2		rs1702877-T	NR	3E-18		0.0663	[0.051-0.081] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1015	chr12	56427807	56427808	rs1702877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	12q13.2		rs1702877-T	0.185138809	1E-11		0.11719969	[0.083-0.151] unit increase	Illumina [13429513] (imputed)	N
1015	chr12	56427807	56427808	rs1702877	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	12q13.2	IKZF4	rs1702877-T	0.3383	8E-10		0.0602	[0.041-0.079] unit increase	NR [9744772] (imputed)	N
1015	chr12	56427807	56427808	rs1702877	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q13.2	ENSG00000257449	rs1702877-T	NR	6E-12		6.874	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1015	chr12	56435411	56435412	rs705704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	12q13.2		rs705704-A	NR	9E-16		0.0742	[0.056-0.092] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1015	chr12	56435411	56435412	rs705704	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	12q13.2		rs705704-A	0.186381674	7E-10		1.1352457	[1.090382653-1.181954567]	Illumina [8919992] (imputed)	N
1015	chr12	56435411	56435412	rs705704	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q13.2	NA	rs705704-A	0.3241	6E-15		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1015	chr12	56435411	56435412	rs705704	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q13.2	RPS26	rs705704-A	0.23	1E-9		1.22		Illumina [803202]	N
1015	chr12	56435503	56435504	rs705705	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	12q13.2	IKZF4	rs705705-C	0.34	4E-32		1.25		Illumina [135870]	N
1015	chr12	56435928	56435929	rs1131017	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.2		rs1131017-C	0.41	5E-20		9.16	z score increase	Affymetrix [9061022] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q13.2		rs1131017-G	NR	6E-12		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.2	NR	rs1131017-C	0.4319	2E-10				NR [9056863] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12q13.2	RPS26	rs1131017-C	0.42839	3E-11		0.0026172	[0.0018-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q13.2	RPS26	rs1131017-G	0.572285	1E-11		0.015075145	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.2	NR	rs1131017-G	0.599872	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q13.2	NR	rs1131017-G	0.572655	1E-12		0.013638	[0.0099-0.0174] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q13.2		rs1131017-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q13.2	Intergenic	rs1131017-C	0.4132	5E-19	(MTAG)	0.0162	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q13.2	Intergenic	rs1131017-C	0.427	6E-23	(MTAG)	0.0229	[0.018-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q13.2	Intergenic	rs1131017-C	0.427	4E-9		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1015	chr12	56435928	56435929	rs1131017	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	12q13.2	RPS26	rs1131017-?	NR	4E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1015	chr12	56439208	56439209	rs12580100	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	12q13.2	RPS26	rs12580100-A	NR	1E-7		1.284	[1.171-1.408]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1015	chr12	56439208	56439209	rs12580100	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	12q13.2	RPS26	rs12580100-A	0.90	1E-6		1.17	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
1015	chr12	56443341	56443342	rs11171731	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	12q13.2	intergenic	rs11171731-T	0.417282	9E-6		0.724	[0.627 - 0.835]	Illumina [5396854] (imputed)	N
1015	chr12	56443341	56443342	rs11171731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.2		rs11171731-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1015	chr12	56444631	56444632	rs34415530	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	12q13.2	RPS26	rs34415530-T	0.342583	5E-17		0.079849504	[0.061-0.098] unit increase	Affymetrix [7288503] (imputed)	N
1015	chr12	56445365	56445366	rs10876866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q13.2		rs10876866-A	NR	3E-8		0.1105	[0.071-0.15] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
1015	chr12	56445365	56445366	rs10876866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	12q13.2		rs10876866-A	NR	9E-10		0.1326	[0.09-0.175] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
1015	chr12	56445365	56445366	rs10876866	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	12q13.2	RPS26, IKZF4, ERBB3, SUOX, PA2G4, RAB5B	rs10876866-A	0.34322	1E-15		1.05419	[1.04-1.07]	Affymetrix [32463443] (imputed)	N
1015	chr12	56445365	56445366	rs10876866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q13.2	Intergenic	rs10876866-G	0.6709	9E-20		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr12	56446765	56446766	rs61938962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q13.2		rs61938962-?	NR	6E-23				NR [~ 8900000] (imputed)	N
1015	chr12	56449434	56449435	rs7302200	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q13.2	RPS26	rs7302200-?	NR	1E-14		0.016756827	[0.013-0.021] unit increase	NR [7306098]	N
1015	chr12	56449434	56449435	rs7302200	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	12q13.2	RPS26	rs7302200-A	0.340319	1E-14		0.074568816	[0.056-0.093] unit increase	Affymetrix [7288503] (imputed)	N
1015	chr12	56449434	56449435	rs7302200	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	12q13.2	RPS26, ERBB3	rs7302200-?	NR	4E-15		1.059	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
1015	chr12	56449434	56449435	rs7302200	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.2	RPS26, ERBB3	rs7302200-A	NR	8E-25		1.077	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1015	chr12	56449434	56449435	rs7302200	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	12q13.2	intergenic	rs7302200-A	0.663	9E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1015	chr12	56449434	56449435	rs7302200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12q13.2	intergenic	rs7302200-A	0.3411	3E-13		0.02746202	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr12	56449874	56449875	rs7305461	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	12q13.2	RPS26	rs7305461-A	0.4461	1E-9		1.098901	[1.06-1.14]	Affymetrix [33771858] (imputed)	N
1015	chr12	56455293	56455294	rs2640564	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	12q13.2	STAT6, B2	rs2640564-T	0.3439	1E-9		1.074	[1.051-1.098]	Affymetrix [15688218] (imputed)	N
1015	chr12	56455293	56455294	rs2640564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.2	Intergenic	rs2640564-T	0.3304	4E-37	(MTAG)	0.0223	[0.019-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr12	56466472	56466473	rs2640562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	12q13.2		rs2640562-T	NR	2E-21		0.0837	[0.066-0.101] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1015	chr12	56466472	56466473	rs2640562	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q13.2		rs2640562-C	0.657	1E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1015	chr12	56467586	56467587	rs7312770	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	12q13.2	RPS26, ERBB3	rs7312770-?	NR	8E-8		1.0729614	[1.05-1.10]	Illumina [13676411] (imputed)	N
1015	chr12	56467586	56467587	rs7312770	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	12q13.2	ERBB3	rs7312770-C	0.47	2E-7		1.1	[1.06-1.15]	Illumina [~ 9000000] (imputed)	N
1015	chr12	56468705	56468706	rs7955865	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.2		rs7955865-A	0.34	7E-12		6.85	z score increase	Affymetrix [9061022] (imputed)	N
1015	chr12	56468705	56468706	rs7955865	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12q13.2	ERBB3	rs7955865-A	0.351453	8E-10		0.0133806	[0.0091-0.0176] unit increase	NR [16516521] (imputed)	N
1015	chr12	56468705	56468706	rs7955865	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q13.2	NR	rs7955865-?	NR	3E-8	(total brain volume)			NR [9227495] (imputed)	N
1015	chr12	56469184	56469185	rs4622308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q13.2		rs4622308-T	NR	5E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1015	chr12	56469184	56469185	rs4622308	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	12q13.2		rs4622308-T	NR	2E-12		1.09	[1.07-1.12]	NR [13810676] (imputed)	N
1015	chr12	56469184	56469185	rs4622308	28494655	Duncan L	2017-05-12	Am J Psychiatry	Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa.	Anorexia nervosa	3,495 European ancestry cases, 10,982 European ancestry controls	NA	12q13.2	IKZF4, RPS26, ERBB3, PA2G4, RPL41, ZC3H10, ESYT1, SUOX, RAB5B, CDK2, PMEL, DGKA	rs4622308-T	0.44	4E-9		1.2	[1.14-1.26]	Illumina [10641224] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.2		rs11171739-C	0.41	2E-33		12.04	z score increase	Affymetrix [9061022] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	12q13.2		rs11171739-?	NR	6E-10		0.94	[0.92-0.06]	Illumina [5170515] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	12q13.2		rs11171739-?	NR	3E-8				NR [7857346] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q13.2	PMEL, CDK2, RAB5B, SUOX, IKZF4, RPS26, ERBB3	rs11171739-?		4E-10				NR [7428630] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q13.2	NR	rs11171739-T	0.5734	4E-11	(total)	526.5497	[370.23-682.87] unit decrease	Affymetrix, Illumina [NR]	N
1015	chr12	56470624	56470625	rs11171739	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	12q13.2	ERBB3	rs11171739-C	0.43	1E-18		1.225		Illumina [252970]	N
1015	chr12	56470624	56470625	rs11171739	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	12q13.2	IKZF4	rs11171739-C	NA	2E-20				Illumina [252970]	N
1015	chr12	56470624	56470625	rs11171739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q13.2	Intergenic	rs11171739-C	0.4181	1E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	12q13.2	CDK2, ERBB3, IKZF4, PA2G4, RAB5B, RPL41, RPS26, SUOX, ZC3H10	rs11171739-?	NR	4E-10		1.07	[1.04-1.09]	Affymetrix [74888535] (imputed)	N
1015	chr12	56470624	56470625	rs11171739	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12q13.2	ERBB3	rs11171739-C	0.42	1E-11		1.34	[1.17-1.54]	Affymetrix [469557]	N
1015	chr12	56473807	56473808	rs7297175	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	12q13.2		rs7297175-T	0.431	7E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1015	chr12	56474142	56474143	rs34379766	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q13.2	ERBB3	rs34379766-A	0.064	5E-7	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1015	chr12	56474378	56474379	rs3741499	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q13.2	ERBB3	rs3741499-T		2E-8		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
1015	chr12	56474378	56474379	rs3741499	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q13.2	NR	rs3741499-C	0.656	4E-13		0.00823738	[0.006-0.0105] unit increase	NR [9732723] (imputed)	N
1015	chr12	56474378	56474379	rs3741499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.2		rs3741499-T	0.3434	5E-35	(conditional-joint)	0.0184	[0.015-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr12	56474479	56474480	rs4759229	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q13.2	NR	rs4759229-A	0.3528	4E-8				NR [9056863] (imputed)	N
1015	chr12	56474479	56474480	rs4759229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	12q13.2	NR	rs4759229-A	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56474479	56474480	rs4759229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	12q13.2	NR	rs4759229-A	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1015	chr12	56474479	56474480	rs4759229	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q13.2	NR	rs4759229-G	0.656	7E-9		0.015569599	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
1015	chr12	56477693	56477694	rs2271194	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12q13.2	ERBB3	rs2271194-A	0.43	2E-11		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1015	chr12	56477693	56477694	rs2271194	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	12q13.2	ERRB3, RAB5B	rs2271194-A	0.42	5E-9		0.0971	[0.065-0.13] unit increase	Illumina [> 10000000] (imputed)	N
1015	chr12	56480582	56480583	rs877636	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	12q13.2	SUOX, ERBB3, RAB5B, IKZF4, RPS26	rs877636-?	NR	3E-7		0.0313	[0.019-0.043] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1015	chr12	56480647	56480648	rs705696	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q13.2	NR	rs705696-G	0.333002	8E-9		0.042838752	[0.028-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1015	chr12	56482179	56482180	rs2292239	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	12q13.2	ERBB3	rs2292239-G	0.66	3E-8		0.0121	[0.0062-0.018] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1015	chr12	56482179	56482180	rs2292239	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12q13.2	ERBB3, IKZF4, Eos	rs2292239-T	NR	4E-9		1.25		Illumina [1233578] (imputed)	N
1015	chr12	56482179	56482180	rs2292239	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	12q13.2	ERBB3	rs2292239-T	NR	3E-27		1.3	[NR]	Affymetrix, Illumina [NR]	N
1015	chr12	56482179	56482180	rs2292239	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	12q13.2	ERBB3	rs2292239-?	NR	2E-25				Affymetrix, Illumina [841622] (imputed)	N
1015	chr12	56482179	56482180	rs2292239	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	12q13.2	ERBB3	rs2292239-A	NR	3E-16				Affymetrix [up to 335565]	N
1015	chr12	56482179	56482180	rs2292239	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	12q13.2	ERBB3	rs2292239-A	0.34	2E-20		1.28	[1.21-1.35]	Affymetrix [NR]	N
1015	chr12	56485268	56485269	rs798829	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q13.2	ERBB3	rs798829-A	0.4727	3E-8		0.011209522	[0.0072-0.0152] unit increase	Affymetrix [up to 18485882] (imputed)	N
1015	chr12	56488912	56488913	rs705708	32700739	Salinas YD	2020-07-23	Am J Epidemiol	Discovery and Mediation Analysis of Cross-Phenotype Associations With Asthma and Body Mass Index in 12q13.2.	Body mass index	305,945 British ancestry individuals	NA	12q13.2	ERBB3	rs705708-A	0.4712	1E-8		0.065	[0.087-0.042] unit decrease	Affymetrix [528797]	N
1015	chr12	56491879	56491880	rs10783779	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q13.2	NA	rs10783779-T	0.6004	5E-15		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1015	chr12	56491879	56491880	rs10783779	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q13.2	NA	rs10783779-T	0.6004	5E-15		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1015	chr12	56491879	56491880	rs10783779	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	12q13.2	intergenic	rs10783779-T	0.607	6E-6		0.021	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	1E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	1E-9				NR [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	1E-7		0.01	mmol/L decrease	NR [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	5E-8		0.008	% increase	NR [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	1E-9		0.012	U/L increase	NR [NR] (imputed)	N
1016	chr12	56493821	56493822	rs2292238	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	12q13.2		rs2292238-A	0.59	2E-8		0.011	U/L increase	NR [NR] (imputed)	N
1016	chr12	56497640	56497641	rs79335261	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q13.2	Intergenic	rs79335261-T	NR	7E-8	(between families)	5.399	unit increase	Affymetrix [up to 15107142] (imputed)	N
1016	chr12	56497902	56497903	rs3759094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.2	NR	rs3759094-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
1016	chr12	56503126	56503127	rs11171744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.2		rs11171744-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1016	chr12	56507701	56507702	rs76167224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q13.2		rs76167224-T	0.9487	2E-8		0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1016	chr12	56507701	56507702	rs76167224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.2	Intergenic	rs76167224-T	0.9487	2E-9	(MTAG)	0.0186	[0.013-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr12	56508408	56508409	rs4759228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q13.2		rs4759228-C	NR	2E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1016	chr12	56508408	56508409	rs4759228	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	12q13.2	NR	rs4759228-c	0.2738	5E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [16201029] (imputed)	N
1016	chr12	56508408	56508409	rs4759228	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q13.2	PA2G4	rs4759228-G	0.704732	1E-14		0.011615	[0.0087-0.0146] unit increase	Affymetrix [12370749]	N
1016	chr12	56508408	56508409	rs4759228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.2		rs4759228-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1016	chr12	56518407	56518408	rs11171747	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	12q13.2	RPL41, ESYT1	rs11171747-?	0.39	6E-8	(dcSSc)	1.23	[1.14-1.33]	Illumina [NR] (imputed)	N
1016	chr12	56559839	56559840	rs1290898	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q13.2	NR	rs1290898-G	0.939233	2E-8		0.024222	[0.016-0.033] unit decrease	NR [NR]	N
1016	chr12	56592573	56592574	rs76459740	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.2	RNF41-SMARCC2	rs76459740-?	NR	3E-8		0.53	[0.33-0.73] unit decrease	Affymetrix [5682219] (imputed)	N
1016	chr12	56592573	56592574	rs76459740	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.2	NR	rs76459740-T	0.1745	3E-33	(female)	0.56	[0.46-0.66] unit decrease	NR [8056211] (imputed)	N
1016	chr12	56603475	56603476	rs76280383	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3		rs76280383-?	NR	1E-11		0.57	[0.41-0.73] unit decrease	Affymetrix [5682219] (imputed)	N
1016	chr12	56603475	56603476	rs76280383	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.3	RNF41	rs76280383-T	0.1748	2E-33	(female)	0.56	[0.46-0.66] unit decrease	NR [8056211] (imputed)	N
1016	chr12	56617843	56617844	rs77394186	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3		rs77394186-?	NR	9E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56627272	56627273	rs11171781	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3		rs11171781-?	NR	1E-13		0.63	[0.47-0.79] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56627272	56627273	rs11171781	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.3	SLC39A5	rs11171781-A	0.1664	2E-38	(female)	0.61	[0.51-0.71] unit decrease	NR [8056211] (imputed)	N
1017	chr12	56630066	56630067	rs17118403	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.3	SLC39A5	rs17118403-T	0.0667	4E-19		0.0337	[0.026-0.041] unit increase	Affymetrix [18391927] (imputed)	N
1017	chr12	56634582	56634583	rs61937675	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.3	NR	rs61937675-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1017	chr12	56634826	56634827	rs72648137	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3	ANKRD52	rs72648137-?	NR	9E-13		0.61	[0.43-0.79] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56634826	56634827	rs72648137	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.3	ANKRD52	rs72648137-C	0.2285	8E-52	(female)	0.64	[0.56-0.72] unit decrease	NR [8056211] (imputed)	N
1017	chr12	56636974	56636975	rs59626664	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q13.3	ANKRD52	rs59626664-C	0.934	2E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1017	chr12	56647910	56647911	rs808919	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.3	APOF	rs808919-C	0.90265625	7E-16	(APOF, 12370_30_3)	0.32112783	[0.24-0.4] unit increase	Illumina [> 1000000] (imputed)	N
1017	chr12	56657215	56657216	rs111885088	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	12q13.3	NR	rs111885088-A		4E-13		1.17		NR [8016731] (imputed)	N
1017	chr12	56658707	56658708	rs59917308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.3		rs59917308-?	NR	3E-32				NR [~ 8900000] (imputed)	N
1017	chr12	56664040	56664041	rs11543260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q13.3		rs11543260-A	NR	2E-8		0.0363	[0.024-0.049] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1017	chr12	56669798	56669799	rs61738833	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	12q13.3		rs61738833-?	NR	8E-9		2.0522	[1.36-2.75] unit increase	Affymetrix [NR] (imputed)	N
1017	chr12	56673562	56673562	rs369160772	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q13.3	APOF	rs369160772-CA	0.071	3E-15	(Apolipoprotein F, APOF.12370.30.3)	0.38	[0.28-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1017	chr12	56680744	56680745	rs3816804	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3	CS	rs3816804-?	NR	2E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56680744	56680745	rs3816804	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	12q13.3	CS, STAT2	rs3816804-C	0.77	3E-9		0.123	[0.082-0.164] unit increase	Affymetrix [1532051] (imputed)	N
1017	chr12	56684496	56684501	rs36207871	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	12q13.3	CS	rs36207871-?	NR	3E-12	(Psoriasis)	1.47	[1.33-1.67]	Affymetrix, Illumina [~ 5200000]	N
1017	chr12	56699428	56699429	rs7133285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q13.3		rs7133285-A	0.203616	1E-33		0.0411021	[0.034-0.048] unit decrease	Illumina [13479924] (imputed)	N
1017	chr12	56699428	56699429	rs7133285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q13.3		rs7133285-A	0.203614	3E-157		0.0671333	[0.062-0.072] unit decrease	Illumina [13479295] (imputed)	N
1017	chr12	56699428	56699429	rs7133285	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3	CNPY2	rs7133285-?	NR	1E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56699428	56699429	rs7133285	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.3	RP11-977G19.10	rs7133285-A	0.232	4E-58	(female)	0.67	[0.59-0.75] unit decrease	NR [8056211] (imputed)	N
1017	chr12	56699428	56699429	rs7133285	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.3	CS, CNPY2	rs7133285-?	NR	1E-189		0.104768015	[0.098-0.112] unit decrease	Illumina [27896057] (imputed)	N
1017	chr12	56708908	56708921	rs1267739712	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	12q13.3		rs1267739712-?	NR	3E-10		0.54546	[0.38-0.71] unit decrease	NR [9800000] (imputed)	N
1017	chr12	56709918	56709919	rs3809128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q13.3		rs3809128-T	NR	1E-32		0.0407	[0.034-0.047] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1017	chr12	56709918	56709919	rs3809128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q13.3		rs3809128-T	NR	6E-156		0.0675	[0.063-0.072] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1017	chr12	56709918	56709919	rs3809128	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3	PAN2-CNPY2	rs3809128-?	NR	3E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56709918	56709919	rs3809128	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	12q13.3	CNPY2	rs3809128-C	0.802	4E-9	(East Asian)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1017	chr12	56709918	56709919	rs3809128	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q13.3	PAN2	rs3809128-T	0.21	7E-35		0.083	[0.065-0.101] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1017	chr12	56723493	56723494	rs146426492	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q13.3	PAN2	rs146426492-?	NR	4E-13		0.63	[0.45-0.81] unit decrease	Affymetrix [5682219] (imputed)	N
1017	chr12	56723493	56723494	rs146426492	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q13.3	PAN2	rs146426492-G	0.2306	4E-57	(female)	0.67	[0.59-0.75] unit decrease	NR [8056211] (imputed)	N
1017	chr12	56737972	56737973	rs2066808	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	12q13.3	IL23A, STAT2	rs2066808-A	NR	6E-10		1.477	[1.305-1.671]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1017	chr12	56737972	56737973	rs2066808	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q13.3	STAT2	rs2066808-A	0.9	9E-12		0.067	[0.038-0.096] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1017	chr12	56737972	56737973	rs2066808	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	12q13.3	IL23A	rs2066808-?	NR	2E-7		1.49	[1.28-1.73]	Illumina [535475]	N
1017	chr12	56737972	56737973	rs2066808	19169254	Nair RP	2009-01-25	Nat Genet	Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.	Psoriasis	1,359 European ancestry cases, 1,400 European ancestry controls	5,048 European ancestry cases, 5,041 European ancestry controls	12q13.3	STAT2, IL23A	rs2066808-A	0.93	1E-9		1.34	[NR]	Perlegen [~ 2500000] (imputed)	N
1017	chr12	56738791	56738792	rs111914426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q13.3	STAT2	rs111914426-C	0.0706290000000001	1E-9		0.026437452	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1017	chr12	56740681	56740682	rs2066807	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	12q13.3	IL23A, STAT2	rs2066807-G	0.932351	5E-12		1.4	[1.27-1.54]	Illumina [up to 4778154] (imputed)	N
1017	chr12	56740681	56740682	rs2066807	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	12q13.3	IL23A, STAT2	rs2066807-G	0.932351	1E-10	(EA)	1.55	[1.35-1.77]	Illumina [up to 4778154] (imputed)	N
1017	chr12	56740681	56740682	rs2066807	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q13.3	STAT2	rs2066807-C	0.93	1E-13		0.054	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1017	chr12	56741227	56741228	rs57137641	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs57137641-G	NR	5E-15		1.18	NR	NR [8016731] (imputed)	N
1017	chr12	56743366	56743367	rs2020854	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	12q13.3	STAT2, IL23A	rs2020854-T	NR	5E-6		1.395	NR	Illumina [11532644] (imputed)	N
1017	chr12	56744275	56744276	rs11575234	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	12q13.3	NR	rs11575234-?	NR	2E-6	(AA)	1.754386	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1017	chr12	56744275	56744276	rs11575234	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	12q13.3	STAT2	rs11575234-?	NR	2E-12	(Psoriasis)	1.47	[1.32-1.64]	Affymetrix, Illumina [~ 5200000]	N
1017	chr12	56750203	56750204	rs2066819	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	12q13.3	STAT2, IL23A	rs2066819-C	NR	4E-15		1.419	NR	Illumina [up to 11532644] (imputed)	N
1017	chr12	56750203	56750204	rs2066819	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	12q13.3	STAT2, IL23A	rs2066819-C	0.934	5E-17		1.39		Illumina [111236] (imputed)	N
1017	chr12	56750871	56750872	rs117779516	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOF	5,365 Icelandic ancestry individuals	NA	12q13.3		rs117779516-C	0.09627	6E-22		0.291793	[0.23-0.35] unit decrease	Illumina [7506463] (imputed)	N
1017	chr12	56753993	56753994	rs11575222	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q13.3	STAT2	rs11575222-?	NR	1E-11		1.172	[0.81-1.53] unit decrease	Affymetrix [11100000] (imputed)	N
1018	chr12	56783239	56783240	rs2047229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q13.3	Intergenic	rs2047229-T	0.3074	4E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1018	chr12	56815280	56815281	rs2291738	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	12q13.3	GLS2, SPRYD4, TIMELESS, PAN2, STAT2, MIP, IL23A, APOF	rs2291738-T	0.554	4E-7		0.0518	[0.032-0.072] unit increase	Illumina [2500000] (imputed)	N
1018	chr12	56828055	56828056	rs11171846	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	12q13.3	TIMELESS	rs11171846-A		6E-10	(AA)			Illumina [NR]	N
1018	chr12	56860019	56860020	rs2939302	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q13.3		rs2939302-G	0.816802	1E-480		0.250009	[0.24-0.26] unit increase	NR [11722792] (imputed)	N
1018	chr12	56860019	56860020	rs2939302	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q13.3	MIP	rs2939302-G	0.80625	5E-16	(gamma-glutamylglutamine)	0.234	[0.18-0.29] unit increase	Illumina [13039987] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q13.3		rs2933243-G	0.816846	8E-28		0.0583306	[0.048-0.069] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	12q13.3		rs2933243-G	0.816811	3E-8		0.0294439	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q13.3		rs2933243-G	0.816812	8E-57		0.0838952	[0.074-0.094] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q13.3		rs2933243-A	NR	1E-9		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12q13.3		rs2933243-A	NR	9E-28		0.0347	[0.028-0.041] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1018	chr12	56860576	56860577	rs2933243	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q13.3	MIP	rs2933243-G	0.806256	2E-26	(glutamine)	0.305	[0.25-0.36] unit increase	Illumina [13039987] (imputed)	N
1018	chr12	56861033	56861034	rs73114872	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial glutamine	4,348 individuals	NA	12q13.3		rs73114872-C	0.192013809	3E-22		0.26303	[0.21-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1018	chr12	56861033	56861034	rs73114872	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q13.3	SPRYD4	rs73114872-T	0.8386	1E-15		0.0076	[0.0058-0.0094] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	12q13.3		rs7302925-A	0.198881	5E-17		0.0425633	[0.033-0.053] unit increase	NR [11722792] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	12q13.3	SPRYD4, GLS2	rs7302925-A		2E-18	(Gln)	0.41	[0.31-0.51] unit decrease	Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs7302925-?		4E-13	(Gln (adjusted for Gly))			Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs7302925-?		3E-11	(Gln (adjusted for Pro))			Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs7302925-?		2E-13	(Gln (adjusted for Asn))			Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs7302925-?		2E-11	(Gln (adjusted for Phe))			Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs7302925-?		1E-13	(Gln (adjusted for Ser))			Illumina [1288202] (imputed)	N
1018	chr12	56861457	56861458	rs7302925	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	12q13.3	SPRYD4	rs7302925-A	0.1	1E-10	(Gln)	0.39	[0.27-0.51] unit decrease	Illumina [1288202] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q13.3		rs2657880-G	0.817606	3E-38		0.068386	[0.058-0.079] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glutamine	4,734 individuals	NA	12q13.3		rs2657880-C	0.192901754	3E-39		0.33822	[0.29-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3		rs2657880-G	NR	9E-7		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3		rs2657880-G	0.81	2E-6	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs2657880-G	NR	5E-10		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1018	chr12	56863769	56863770	rs2657880	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	12q13.3	GLS2, SPRYD4	rs2657880-?	0.14	7E-30				Illumina [~ 2000000] (imputed)	N
1018	chr12	56865055	56865056	rs2638315	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	12q13.3		rs2638315-G	0.817548	1E-16		0.0430756	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56865055	56865056	rs2638315	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	12q13.3		rs2638315-G	0.817511	4E-16		0.0417348	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56865055	56865056	rs2638315	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q13.3	NR	rs2638315-G	0.817958	1E-17		0.0223429	[0.017-0.027] unit increase	NR [NR]	N
1018	chr12	56865055	56865056	rs2638315	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	12q13.3	GLS2	rs2638315-?	NR	2E-35	(Gln, Glc)	0.29	[0.25-0.33] unit decrease	Illumina [~ 7700000] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	12q13.3		rs2657879-A	0.817507	6E-18		0.0446283	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12q13.3		rs2657879-A	0.817465	3E-21		0.0476182	[0.038-0.057] unit decrease	NR [11722792] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	12q13.3	GLS2	rs2657879-A	0.8199	7E-9		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q13.3	NR	rs2657879-A	0.82	4E-19		0.021	[0.016-0.026] unit decrease	NR [NR]	N
1018	chr12	56865337	56865338	rs2657879	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	12q13.3	GLS2	rs2657879-?	NR	7E-36	(Gln)	0.14766891	NR unit decrease	Illumina [609262]	N
1018	chr12	56865337	56865338	rs2657879	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	12q13.3	GLS2	rs2657879-?	NR	5E-33	(Gln)	0.15054715	NR unit decrease	Illumina [609262]	N
1018	chr12	56865337	56865338	rs2657879	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs2657879-A		2E-18	(Gln)	0.41	[0.31-0.51] unit decrease	Illumina [1288202] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	12q13.3	GLS2	rs2657879-A	0.09	3E-11	(Gln)	0.41	[0.29-0.53] unit decrease	Illumina [1288202] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q13.3	GLS2	rs2657879-G	0.18	3E-70	(Glutamine)	0.22	[0.2-0.24] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	12q13.3	GLS2	rs2657879-A	0.8097	2E-14	(Glutamine)	0.0342	[0.025-0.043] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q13.3	GLS2	rs2657879-A	0.83	6E-19	(gamma-glutamylglutamine)	0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q13.3	GLS2	rs2657879-A	0.82	6E-18	(glutamine)	0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1018	chr12	56865337	56865338	rs2657879	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12q13.3	GLS2, RBMS2, SPRYD4	rs2657879-?	NR	3E-13	(glutamine)	0.01542	[NR] unit decrease	Affymetrix [655658]	N
1018	chr12	56865337	56865338	rs2657879	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12q13.3	GLS2	rs2657879-G	0.187	3E-17	(glutamine + 7 other traits)	0.035	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1018	chr12	56866333	56866334	rs2638314	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	12q13.3	GLS2	rs2638314-A	0.182	2E-8		0.042	[0.028-0.056] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1018	chr12	56866961	56866962	rs2657878	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		12q13.3	MIP, SPRYD4, GLS2	rs2657878-C	NR	2E-8		0.010728	[0.0054-0.0161] nmol/l increase	NR [19000000] (imputed)	N
1018	chr12	56880158	56880159	rs192597095	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12q13.3	GLS2	rs192597095-T	0.005	2E-7	(Tetracyclines [J01AA])	8.5		Illumina [16500000] (imputed)	N
1018	chr12	56881613	56881614	rs117867773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q13.3	NR	rs117867773-A	NR	5E-14		0.0372	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.3		rs2657910-A	0.14154	5E-11		0.02081071	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q13.3		rs2657910-A	0.141545	3E-10		0.0197729	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.3		rs2657910-A	0.14154	1E-11		0.021611359	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2657910-A	0.133901	5E-16				Affymetrix, Illumina [24332387] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q13.3	NR	rs2657910-A	0.141064	6E-18		0.02292	[0.018-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2657910-A	0.133902	2E-11				Affymetrix, Illumina [21126107] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q13.3	NR	rs2657910-A	0.141312	6E-14		0.021629	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12q13.3	GLS2	rs2657910-A	0.134	7E-6		0.0018	[0.00082-0.00278] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr12	56891648	56891649	rs2657910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.3		rs2657910-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1019	chr12	56898416	56898417	rs141116113	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	12q13.3	GLS2	rs141116113-T	0.06	9E-10		0.716	[0.49-0.95] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr12	56912863	56912864	rs2694917	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	12q13.3	GLS2	rs2694917-T	0.81	2E-29	(glutamine/histidine)	0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1019	chr12	56918833	56918834	rs4759247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q13.3	NR	rs4759247-G	0.483362	4E-10		0.011545	[0.0079-0.0152] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1019	chr12	56918833	56918834	rs4759247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q13.3	NR	rs4759247-G	0.483383	3E-12		0.012913	[0.0093-0.0165] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1019	chr12	56920938	56920939	rs774211	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	12q13.3	RBMS2	rs774211-T		4E-13	(Gln)	0.3	[0.22-0.38] unit decrease	Illumina [1288202] (imputed)	N
1019	chr12	56920938	56920939	rs774211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.3		rs774211-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1019	chr12	56921417	56921418	rs2933235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q13.3		rs2933235-A	0.833774	4E-9		0.032722	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
1019	chr12	56921417	56921418	rs2933235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q13.3		rs2933235-G	NR	2E-12		0.0228	[0.017-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1019	chr12	56927339	56927340	rs7136456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs7136456-C	0.504005	3E-10				Affymetrix, Illumina [24558453] (imputed)	N
1019	chr12	56934927	56934928	rs2694909	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q13.3	NR	rs2694909-C	NR	2E-13		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr12	56938382	56938383	rs2657888	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12q13.3	NR	rs2657888-T	NR	8E-6		0.019	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr12	56985557	56985558	rs2950389	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q13.3	RBMS2	rs2950389-?	NR	4E-9		0.0296	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q13.3		rs7973618-C	NR	1E-70		0.0352	[0.031-0.039] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q13.3		rs7973618-T	0.634	3E-8				Affymetrix [10369434] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q13.3		rs7973618-T	0.634	1E-32				Affymetrix [10369434] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.3	BAZ2A	rs7973618-C	0.368169	5E-19		0.040550396	[0.032-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.3	BAZ2A	rs7973618-C	0.36816	1E-53		0.035790868	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.3	BAZ2A	rs7973618-C	0.368144	4E-293		0.08379035	[0.079-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr12	57019442	57019443	rs7973618	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q13.3	BAZ2A	rs7973618-C	0.3676	6E-98		0.07865918	[0.071-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57021005	57021006	rs2950387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2950387-C	0.364349	7E-77				Affymetrix, Illumina [24588908] (imputed)	N
1020	chr12	57021005	57021006	rs2950387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q13.3	NR	rs2950387-C	0.36824	7E-75		0.034792	[0.031-0.039] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1020	chr12	57021005	57021006	rs2950387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q13.3	NR	rs2950387-T	0.632515	2E-364		0.079935	[0.076-0.084] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1020	chr12	57023283	57023284	rs941207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q13.3		rs941207-G	0.3303	4E-8		0.0193511	[0.012-0.026] unit increase	Illumina [13478928] (imputed)	N
1020	chr12	57023283	57023284	rs941207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q13.3	NR	rs941207-G	NR	5E-14		0.0204	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr12	57023283	57023284	rs941207	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	12q13.3	PTGES3, BAZ2A	rs941207-G	NR	2E-10		2.751	[1.91-3.6] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1020	chr12	57033352	57033353	rs2950388	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q13.3	BAZ2A, PTGES3	rs2950388-C	0.72	4E-12		6.94	z-score increase	Affymetrix [4312306] (imputed)	N
1020	chr12	57034693	57034694	rs9634277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q13.3	ATP5B	rs9634277-G	0.333109	2E-14		0.018215485	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr12	57036022	57036023	rs2950393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q13.3	ATP5B	rs2950393-A	0.337815	9E-10		0.028386327	[0.019-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr12	57036022	57036023	rs2950393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12q13.3	ATP5B	rs2950393-A	0.3378	1E-67		0.06604341	[0.059-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57038170	57038171	rs10716881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q13.3	ATP5B	rs10716881-G	0.351289	6E-16		0.01894979	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr12	57038170	57038171	rs10716881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q13.3	ATP5B	rs10716881-G	0.3514	7E-9		0.02172399	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57047019	57047020	rs11171916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs11171916-G	0.667699	3E-344				Affymetrix, Illumina [17210439] (imputed)	N
1020	chr12	57053539	57053540	rs11837319	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12q13.3	PTGES3	rs11837319-C	0.719118	2E-11		0.0029251	[0.0021-0.0038] unit increase	Affymetrix [13995440] (imputed)	N
1020	chr12	57055290	57055291	rs2950390	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	12q13.3	PTGES3, BAZ2A	rs2950390-C	NR	7E-14		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1020	chr12	57060529	57060530	rs141900298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q13.3	NR	rs141900298-C	0.972967	2E-8		0.0144963	[0.0093-0.0197] unit increase	Affymetrix [16582909] (imputed)	N
1020	chr12	57060529	57060530	rs141900298	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q13.3	NR	rs141900298-C	0.972967	1E-5		0.0130372	[0.0072-0.0189] unit increase	Affymetrix [16582965] (imputed)	N
1020	chr12	57068866	57068867	rs7311160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q13.3	PTGES3	rs7311160-T	0.544818	2E-14		0.017475132	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57068866	57068867	rs7311160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q13.3	PTGES3	rs7311160-T	0.544844	2E-13		0.01672992	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57078619	57078620	rs2290893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q13.3	PTGES3	rs2290893-G	0.6446	4E-9		0.02208416	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57097054	57097055	rs56258039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q13.3		rs56258039-A	0.024008	4E-15		0.056613572	[0.042-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57098039	57098040	rs7137749	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q13.3	NACA	rs7137749-T	0.3668	4E-17		0.132	[0.1-0.16] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1020	chr12	57103153	57103154	rs7978685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q13.3		rs7978685-C	NR	7E-9		0.0609	[0.04-0.081] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1020	chr12	57103153	57103154	rs7978685	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q13.3	NACA	rs7978685-T	0.28	6E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1020	chr12	57103927	57103928	rs2926752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q13.3		rs2926752-T	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1020	chr12	57105937	57105938	rs2860482	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q13.3	NACA	rs2860482-A	0.274	1E-12		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1020	chr12	57105937	57105938	rs2860482	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q13.3	NACA	rs2860482-A	0.28	1E-9	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1020	chr12	57111947	57111948	rs58668145	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	12q13.3		rs58668145-T	0.516932855	3E-8		0.93062115	[0.907250289-0.954593992]	Illumina [8919992] (imputed)	N
1020	chr12	57114099	57114100	rs2926743	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	12q13.3	NACA	rs2926743-A	0.25326	4E-15		0.293246	[0.22-0.37] ms decrease	Illumina [162199]	N
1020	chr12	57114099	57114100	rs2926743	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	12q13.3	NACA	rs2926743-A	0.272350146196745	6E-10		0.31427652	[0.21-0.41] ms decrease	Illumina [213295]	N
1020	chr12	57114202	57114203	rs201900348	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	12q13.3		rs201900348-?	NR	6E-6		7.55851	[6.68-8.43]	NR [663102]	N
1020	chr12	57140505	57140506	rs2958130	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	12q13.3		rs2958130-A	0.65	1E-8		0.0603	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	12q13.3		rs2277339-G	NR	3E-11		0.0801	[0.056-0.104] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	12q13.3		rs2277339-G	0.205645119	8E-9		0.09820243	[0.065-0.132] unit decrease	Illumina [13401454] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q13.3		rs2277339-G	NR	5E-12		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q13.3		rs2277339-G	NR	5E-30		0.0333	[0.028-0.039] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q13.3		rs2277339-G	NR	8E-25		0.0302	[0.025-0.036] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q13.3		rs2277339-T	0.897	7E-25		0.19	[-0.22--0.15] % decrease	Affymetrix [NR] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.3	PRIM1	rs2277339-T	0.8961	2E-30		0.0354	[0.029-0.041] unit increase	Affymetrix [18391927] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12q13.3	PRIM1	rs2277339-T	0.896	5E-18		0.04	[0.032-0.048] unit increase	Affymetrix [18391927] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12q13.3	PRIM1	rs2277339-T	0.896	7E-15		0.03	[0.02-0.04] unit increase	Affymetrix [18391927] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103619	6E-11		0.024077024	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103895	6E-11		0.02377303	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103922	5E-21		0.034365352	[0.027-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103941	7E-17		0.030737784	[0.024-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103876	2E-29		0.0407783	[0.034-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q13.3	PRIM1	rs2277339-G	0.103891	2E-24		0.03689887	[0.03-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2277339-G	0.123823	7E-43				Affymetrix, Illumina [24246363] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q13.3	NR	rs2277339-G	0.104405	6E-43		0.040829	[0.035-0.047] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2277339-G	0.12531	1E-28				Affymetrix, Illumina [20825802] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q13.3	NR	rs2277339-G	0.104326	2E-28		0.034911	[0.029-0.041] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q13.3	NR	rs2277339-G	0.1427	7E-15		0.0437	[0.033-0.055] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q13.3		rs2277339-G	0.201701193	5E-8		1.0573972	[1.036457663-1.078759974]	Illumina [8919992] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q13.3		rs2277339-?	0.2063	3E-10		1.0516965	[1.03537648594243-1.0682737619078]	Illumina [8919992] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q13.3	NR	rs2277339-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.3	PRIM1	rs2277339-?	NR	7E-14		0.026297964	[0.019-0.033] unit decrease	Illumina [27896057] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q13.3		rs2277339-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.3	NR	rs2277339-?	NR	9E-8	(male)	0.30385	[0.19-0.42] unit decrease	Affymetrix [7794483] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q13.3	NR	rs2277339-?	NR	2E-10		0.22799	[0.16-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q13.3	NR	rs2277339-T	0.8931	2E-14		0.0224	[0.017-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	12q13.3	PRIM1 / TAC3	rs2277339-T	0.8	8E-20	(japanese)	0.29	[0.23-0.35] year increase	Illumina [at least 532488] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	12q13.3	NR	rs2277339-T	0.7964	8E-20	(japanese)	0.294	[0.23-0.36] year increase	Illumina [at least 532488] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q13.3	PRIM1	rs2277339-G	0.1038	1E-10		0.03854796	[0.027-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q13.3	PRIM1	rs2277339-G	0.1042	1E-9		0.03516734	[0.024-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	12q13.3	PRIM1, TAC3	rs2277339-G	0.1	2E-19		0.31	[0.25-0.37] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1020	chr12	57146068	57146069	rs2277339	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	12q13.3	PRIM1	rs2277339-G	0.102	2E-19		0.38	[0.3-0.46] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
1021	chr12	57151328	57151329	rs2958137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12q13.3		rs2958137-G	0.438201	6E-11		0.0206819	[0.014-0.027] unit increase	Illumina [13479135] (imputed)	N
1021	chr12	57151328	57151329	rs2958137	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	12q13.3	PRIM1, HSD17B6	rs2958137-?	NR	1E-9		0.02659	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1021	chr12	57151328	57151329	rs2958137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.3	HSD17B6	rs2958137-G	0.5186	4E-22		0.03558414	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1021	chr12	57171515	57171516	rs10459247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q13.3		rs10459247-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1021	chr12	57200234	57200235	rs115558197	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q13.3	NR	rs115558197-A	0.02	5E-8		0.023747	[0.015-0.032] unit increase	NR [9732723] (imputed)	N
1021	chr12	57204159	57204160	rs12367822	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	12q13.3	HSD17B6	rs12367822-T	0.277	1E-6	(collagen)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1021	chr12	57234903	57234904	rs192312544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q13.3	Intergenic	rs192312544-A	0.0134	3E-8	(MTAG)	0.0322	[0.021-0.044] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1021	chr12	57242247	57242248	rs186344461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.3	RP11-74M13.4	rs186344461-G	0.00586799999999998	1E-9		0.09395377	[0.064-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
1021	chr12	57263616	57263617	rs117991841	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	12q13.3		rs117991841-C	NR	8E-6		0.774762	[0.66-0.89] unit increase	Affymetrix [825927] (imputed)	N
1021	chr12	57265374	57265375	rs4759260	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	12q13.3	RP11-74M13.4	rs4759260-A	0.04	1E-6	(female)	5.57	z score increase	Illumina [6380737] (imputed)	N
1022	chr12	57280585	57280586	rs4526799	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	12q13.3	HSD17B6, SDR9C7	rs4526799-T	0.34	7E-6		0.05	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
1022	chr12	57283231	57283232	rs10876947	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q13.3	Intergenic	rs10876947-T	NR	2E-6		0.0171988	[0.01-0.024] unit decrease	Illumina [13520550] (imputed)	N
1022	chr12	57283231	57283232	rs10876947	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q13.3	Intergenic	rs10876947-T	NR	6E-10		0.0261408	[0.018-0.034] unit decrease	Illumina [13520550] (imputed)	N
1022	chr12	57305579	57305580	rs1391708	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	12q13.3	LOC100128944	rs1391708-?	NR	5E-7	(Males only)	0.06	[NR] unit increase	Illumina [522636]	N
1022	chr12	57308259	57308260	rs11172055	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	12q13.3	SDR9C7, LRP1, STAT6	rs11172055-T	0.48	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1022	chr12	57320710	57320711	rs840163	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	12q13.3	SDR9C7	rs840163-?		2E-6		1.4	[NR]	Illumina [803323]	N
1022	chr12	57321404	57321405	rs189441863	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	12q13.3	SDR9C7	rs189441863-A	0.009	4E-7		3.02	[1.96-4.64]	Illumina [9327222] (imputed)	N
1022	chr12	57322740	57322741	rs58267004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.3		rs58267004-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1022	chr12	57323522	57323523	rs840161	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (binary sum-score)	148,752 European ancestry individuals	NA	12q13.3	SDR9C7	rs840161-A	0.366	4E-8		0.021	[0.013-0.029] unit decrease	NR [9413637] (imputed)	N
1022	chr12	57330857	57330858	rs10506346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	12q13.3		rs10506346-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1022	chr12	57331369	57331370	rs10506348	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q13.3	Intergenic	rs10506348-G	NR	5E-7		0.0440133	[0.027-0.061] unit decrease	Illumina [13520550] (imputed)	N
1022	chr12	57354513	57354514	rs11524050	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	12q13.3	intergenic	rs11524050-G	NR	2E-6		0.199898	[0.12-0.28] unit decrease	Illumina [7433384] (imputed)	N
1022	chr12	57359261	57359261	rs34138930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q13.3	NR	rs34138930-C	0.88658	3E-10		0.0204126	[0.014-0.027] unit increase	Affymetrix [16583148] (imputed)	N
1022	chr12	57359261	57359261	rs34138930	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	12q13.3	NR	rs34138930-C	0.886148	4E-15		0.0376016	[0.028-0.047] unit increase	Affymetrix [16577424] (imputed)	N
1022	chr12	57377346	57377347	rs4759042	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	12q13.3	intergenic	rs4759042-?	0.63	3E-6		1.05	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1022	chr12	57377508	57377509	rs2279743	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.3		rs2279743-?	NR	1E-8		0.0159014	[0.01-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1022	chr12	57377508	57377509	rs2279743	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.3	GPR182	rs2279743-T	0.854844	9E-7	(women)	0.0314227	[0.019-0.044] unit increase	NR [17166351] (imputed)	N
1022	chr12	57377508	57377509	rs2279743	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.3	GPR182	rs2279743-T	0.854836	1E-11		0.0327615	[0.023-0.042] unit increase	NR [17166351] (imputed)	N
1022	chr12	57377508	57377509	rs2279743	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q13.3	GPR182	rs2279743-T	0.854827	4E-6	(men)	0.033393	[0.019-0.048] unit increase	NR [17166351] (imputed)	N
1022	chr12	57391291	57391292	rs58298943	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q13.3	HBCBP	rs58298943-C	0.915682	4E-9		0.0201854	[0.013-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1022	chr12	57394634	57394635	rs3741578	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	12q13.3	ZBTB39	rs3741578-?		1E-6		0.247	[0.15-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1023	chr12	57414994	57414995	rs117444538	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q13.3	TAC3	rs117444538-C	NR	5E-8		0.0615962	[0.04-0.083] unit increase	Affymetrix [16832071] (imputed)	N
1023	chr12	57433850	57433851	rs3886083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.3		rs3886083-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1023	chr12	57435051	57435052	rs17546153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.3	MYO1A	rs17546153-G	0.036429	8E-10		0.036558293	[0.025-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr12	57445872	57445873	rs7961920	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q13.3	MYO1A	rs7961920-C	0.85723	3E-10		0.0167058	[0.011-0.022] unit increase	NR [13737936] (imputed)	N
1023	chr12	57449205	57449206	rs11172086	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	12q13.3	GPR182, HSD17B6, MYO1A, NACA, PRIM1, PTGES3, RDH16, SDR9C7, TAC3, ZBTB39	rs11172086-C	0.910594	8E-18		1.098543	[1.08-1.12]	Affymetrix [8274727] (imputed)	N
1023	chr12	57475600	57475601	rs141773786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q13.3		rs141773786-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1023	chr12	57480319	57480320	rs60667919	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q13.3	TMEM194A	rs60667919-C	0.321425	2E-10		0.0135147	[0.0093-0.0177] unit decrease	Affymetrix [NR] (imputed)	N
1023	chr12	57487813	57487814	rs324017	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	12q13.3		rs324017-?	NR	3E-9		0.0205	NR unit increase	NR [4428082] (imputed)	N
1023	chr12	57487813	57487814	rs324017	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q13.3	NR	rs324017-C	0.705276	5E-10		0.045388	[0.031-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1023	chr12	57487813	57487814	rs324017	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q13.3	NAB2/STAT6	rs324017-A	0.294759	2E-10		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1023	chr12	57487813	57487814	rs324017	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q13.3	NAB2/STAT6	rs324017-A	0.294759	3E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1023	chr12	57487813	57487814	rs324017	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q13.3	NR	rs324017-A	0.294	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1023	chr12	57487813	57487814	rs324017	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q13.3	NR	rs324017-C	NR	3E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	12q13.3		rs1059513-C	0.08	1E-18				Affymetrix, Illumina [NR] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	12q13.3		rs1059513-?	NR	3E-9		0.91	[0.88-0.94]	Illumina [5170515] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	12q13.3	STAT6, NAB2, NEMP1, LRP1, MYO1A, TAC3	rs1059513-T	0.89259	3E-29		1.1245052	[1.1-1.15]	Affymetrix [32463443] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	12q13.3	NR	rs1059513-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs1059513-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	12q13.3	STAT6	rs1059513-C	0.107253	7E-9		0.11708191	[0.077-0.157] unit decrease	Affymetrix [7288503] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	12q13.3	STAT6	rs1059513-C	0.106698	6E-17		0.121820115	[0.093-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	12q13.3	STAT6	rs1059513-?	NR	5E-20		1.105	[1.08-1.13]	Affymetrix [9000000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.3	STAT6	rs1059513-T	NR	6E-28		1.127	[1.11-1.15]	Affymetrix [9000000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	12q13.3	STAT6	rs1059513-T	0.9	1E-9		1.2658228	[1.18-1.37]	Affymetrix, Illumina [16531985] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	12q13.3	GPR182, MYO1A, NAB2, RDH16, SDR9C7, STAT6, TAC3, TMEM194A, ZBTB39	rs1059513-?	NR	8E-13		1.0869565		NR [74888535] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q13.3	STAT6	rs1059513-T	0.89	1E-22		1.084	[1.07-1.1]	Affymetrix, Illumina [8307659] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	12q13.3	STAT6	rs1059513-C	0.1072	5E-17		0.04824648	[0.037-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	12q13.3	STAT6	rs1059513-C	0.1072	2E-15		0.04583931	[0.035-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	12q13.3	STAT6	rs1059513-C	0.1071	6E-18		0.04950151	[0.038-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	12q13.3	STAT6	rs1059513-C	0.1072	3E-17		0.04863168	[0.037-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12q13.3	STAT6	rs1059513-C	0.1071	5E-18		0.04964535	[0.038-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	12q13.3	STAT6	rs1059513-?	NR	6E-7				Illumina [12845910] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	12q13.3	STAT6	rs1059513-?	NR	7E-6	(Hypoesthesia, Recessive)			Illumina [243229]	N
1023	chr12	57489708	57489709	rs1059513	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	12q13.3	STAT6	rs1059513-T	0.9	1E-14		1.3	[1.21-1.39]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1023	chr12	57489708	57489709	rs1059513	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	12q13.3	STAT6, NAB2	rs1059513-C	NR	2E-12		0.12	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	12q13.3		rs3024971-G	NR	1E-12		0.109	[0.079-0.139] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	12q13.3		rs3024971-G	NR	6E-9		0.1064	[0.071-0.142] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q13.3		rs3024971-G	NR	3E-23		0.0276	[0.022-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q13.3		rs3024971-T	0.893	8E-13				Affymetrix [10369434] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	12q13.3	STAT6	rs3024971-G	0.107141935374221	5E-26		0.112195864	[0.091-0.133] unit decrease	Affymetrix [35186738] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q13.3	STAT6	rs3024971-G	0.107019	2E-17		0.031122781	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q13.3	STAT6	rs3024971-G	0.106998	8E-18		0.031504955	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs3024971-G	0.0939462	4E-35				Affymetrix, Illumina [19872809] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	12q13.3	STAT6	rs3024971-T	0.9	6E-10		0.043	[0.029-0.057] unit decrease	NR [NR] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	12q13.3	STAT6	rs3024971-T	0.9	3E-10		0.044	[0.03-0.058] unit decrease	NR [7647814] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q13.3	STAT6	rs3024971-T	0.895093	3E-32		1.1226287	[1.10130557400131-1.14436473003285]	NR [9572556] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q13.3	NR	rs3024971-?	NR	3E-24				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs3024971-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q13.3	NR	rs3024971-T	0.893	7E-25		1.10595	[1.09-1.13]	Affymetrix [15688218] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	12q13.3	STAT6, NAB2	rs3024971-G	0.107	1E-28				Affymetrix [15688218] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	12q13.3	NR	rs3024971-T	0.893	5E-30		1.1072971	[1.09-1.13]	Affymetrix [15688218] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q13.3		rs3024971-?	NR	8E-39				NR [~ 8900000] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q13.3		rs3024971-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	12q13.3	GPR182, MYO1A, NAB2, RDH16, STAT6, TAC3, TMEM194A, ZBTB39	rs3024971-?	NR	1E-9		1.1111112	[1.08-1.15]	Affymetrix [74888535] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	12q13.3	STAT6	rs3024971-T	NR	1E-6		0.182562	[0.11-0.26] unit decrease	Illumina [7433384] (imputed)	N
1023	chr12	57493726	57493727	rs3024971	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q13.3	STAT6	rs3024971-T	0.896	2E-8		0.0474642	[0.031-0.064] unit increase	Illumina [13520550] (imputed)	N
1023	chr12	57497004	57497005	rs703816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	12q13.3		rs703816-C	NR	1E-17		0.0734	[0.057-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1023	chr12	57497004	57497005	rs703816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	12q13.3		rs703816-C	NR	2E-15		0.0578	[0.043-0.072] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1023	chr12	57497004	57497005	rs703816	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	12q13.3	STAT6	rs703816-C	0.4341	4E-13		1.12	[1.09-1.15]	Affymetrix [33771858] (imputed)	N
1023	chr12	57498219	57498220	rs201011002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q13.3	STAT6	rs201011002-C	0.00534599999999996	1E-9		0.09917144	[0.067-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr12	57498219	57498220	rs201011002	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	12q13.3	GPR182, HSD17B6, INHBC, LRP1, MIR1228, MYO1A, NAB2, NDUFA4L2, NXPH4, R3HDM2, RDH16, SDR9C7, SHMT2, STAC3, STAT6, TAC3, TMEM194A, ZBTB39	rs201011002-T	0.994612	2E-8		1.2810384	[1.19-1.37]	Affymetrix [8274727] (imputed)	N
1023	chr12	57502980	57502981	rs324012	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	12q13.3	STAT6	rs324012-T	0.4488	9E-10		0.0062	[0.0042-0.0082] unit increase	Affymetrix [~ 7740000] (imputed)	N
1023	chr12	57502980	57502981	rs324012	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	12q13.3	STAT6	rs324012-T	NR	5E-6		0.0159334	[0.0091-0.0228] unit decrease	Illumina [13519193] (imputed)	N
1023	chr12	57503774	57503775	rs167769	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q13.3	STAT6	rs167769-T	0.39	3E-39				NR [> 9500000] (imputed)	N
1023	chr12	57503774	57503775	rs167769	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	12q13.3	STAT6, NAB2, LRP1	rs167769-T	0.4	4E-9		1.08	[1.05-1.11]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1023	chr12	57503774	57503775	rs167769	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	12q13.3	STAT6, NAB2, LRP1	rs167769-T	0.4	6E-9		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1023	chr12	57503774	57503775	rs167769	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	12q13.3	STAT6	rs167769-T	0.377	2E-7		1.351	[1.24-1.46]	Illumina [~ 2300000] (imputed)	N
1023	chr12	57503774	57503775	rs167769	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	12q13.3	STAT6	rs167769-T	0.37	2E-6		1.36	[1.10-1.69]	Illumina [~ 550000]	N
1023	chr12	57509054	57509055	rs3001426	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	12q13.3	STAT6	rs3001426-C	0.452847	1E-15		0.056191783	[0.042-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1023	chr12	57509054	57509055	rs3001426	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	12q13.3	STAT6, LRP1	rs3001426-?	NR	1E-10		1.066098	[1.05-1.09]	Illumina [13747813] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	12q13.3	NR	rs3122929-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q13.3	NR	rs3122929-?	NR	4E-25				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs3122929-?	NR	4E-25				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs3122929-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	12q13.3	GPR182, HSD17B6, LRP1, MYO1A, NAB2, NACA, PRIM1, PTGES3, RDH16, SDR9C7, STAT6, TAC3, TMEM194A, ZBTB39	rs3122929-T	0.404012	1E-27		1.0712354	[1.06-1.08]	Affymetrix [8274727] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	12q13.3	NR	rs3122929-?	NR	6E-11	(conditional)			Affymetrix [15688218] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q13.3	STAT6, NAB2, LRP1	rs3122929-T	0.404	7E-17		1.134	[1.101-1.167]	Affymetrix [10894596] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	12q13.3	STAT6, NAB2, LRP1	rs3122929-T	0.404	6E-9		1.061	[1.040-1.082]	Affymetrix [10894596] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	12q13.3	STAT6	rs3122929-T	0.397	1E-9		1.063	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q13.3	STAT6	rs3122929-?	NR	2E-34		1.095	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q13.3	STAT6	rs3122929-T	NR	8E-34		1.088	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	30787307	Daya M	2019-02-20	Nat Commun	Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations.	Adult asthma	4,235 African American Afro-Caribbean cases, 5,283 African American Afro-Caribbean controls, 2774 Hispanic cases, 2,362 Hispanic controls	NA	12q13.3	STAT6, LRP1	rs3122929-T	0.27	9E-7		1.17	[1.10-1.24]	Affymetrix, Illumina [23328733] (imputed)	N
1023	chr12	57509101	57509102	rs3122929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	12q13.3		rs3122929-?	NR	3E-27				NR [~ 8900000] (imputed)	N
1023	chr12	57510308	57510309	rs324014	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q13.3	Intergenic	rs324014-T	NR	2E-7		0.0165328	[0.01-0.023] unit increase	Illumina [13520550] (imputed)	N
1023	chr12	57510308	57510309	rs324014	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q13.3	Intergenic	rs324014-T	NR	1E-6	(men)	0.021443	[0.013-0.03] unit increase	Illumina [13520550] (imputed)	N
1023	chr12	57510308	57510309	rs324014	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q13.3	STAT6, LRP1	rs324014-T	0.566	3E-13		0.0270733	[0.02-0.034] unit increase	Illumina [13520550] (imputed)	N
1023	chr12	57510784	57510785	rs61937568	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q13.3	STAT6, LRP1	rs61937568-?	NR	9E-8		0.023719702	[0.015-0.032] unit increase	Illumina [27896057] (imputed)	N
1023	chr12	57511733	57511734	rs12312693	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	12q13.3	STAT6, AC023237.1	rs12312693-T	0.55	2E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1023	chr12	57515803	57515804	rs11172111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls, 29,694 East Asian ancestry cases, 149,032 East Asian ancestry controls	NA	12q13.3		rs11172111-G	NR	2E-13		0.0518	[0.038-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.3		rs11172113-C	0.38	1E-9		6.08	z score increase	Affymetrix [9061022] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q13.3		rs11172113-C	NR	5E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	12q13.3		rs11172113-C	NR	1E-13		0.1428	[0.11-0.18] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	12q13.3		rs11172113-C	NR	1E-15		0.0519	[0.039-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	12q13.3		rs11172113-C	NR	3E-8		0.1307	[0.085-0.177] unit decrease	Affymetrix, Illumina [25843950] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q13.3		rs11172113-C	0.41	6E-12				NR [NR] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q13.3		rs11172113-C	0.41	5E-11		0.01	% increase	NR [NR] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q13.3	LRP1	rs11172113-T	0.5877	5E-17		0.0159	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	12q13.3	LRP1	rs11172113-T	0.61	3E-8		0.414	[0.27-0.56] unit decrease	Illumina [6690240] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 221 European ancestry female cases, up to 20 East Asian ancestry female cases, up to 4,258 European ancestry female controls, up to 395 East Asian ancestry female controls	up to 134 European ancestry female cases, up to 12 East Asian ancestry female cases, up to 2,608 European ancestry female controls, up to 242 East Asian female controls	12q13.3	LRP1	rs11172113-T	0.6089	6E-8		0.4302	[0.27-0.59] unit increase	Illumina [6690240] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	12q13.3	NR	rs11172113-?	NR	2E-17				NR [up to 7000000]	N
1023	chr12	57527282	57527283	rs11172113	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine with aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	12q13.3	NR	rs11172113-?	NR	2E-10				NR [up to 7000000]	N
1023	chr12	57527282	57527283	rs11172113	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	12q13.3	NR	rs11172113-?	NR	2E-50				NR [up to 7000000]	N
1023	chr12	57527282	57527283	rs11172113	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	12q13.3	LRP1	rs11172113-T	0.59	1E-13		1.69	[1.47-1.94]	Illumina [~ 5000000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	12q13.3	LRP1	rs11172113-C	0.411039	3E-13		0.14350381	[0.11-0.18] unit decrease	Affymetrix [7288503] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	12q13.3	LRP1	rs11172113-C	0.409705	9E-16		0.053406294	[0.04-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q13.3	LRP1	rs11172113-T	0.5889	3E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q13.3	LRP1	rs11172113-T	0.5889	7E-21		0.0227	[0.018-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q13.3		rs11172113-?	NR	6E-29				NR [~ 8900000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	12q13.3	LRP1, STAT6, SDR9C7	rs11172113-C	NR	5E-47		0.0202	[0.017-0.023] unit decrease	Affymetrix [9304965] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q13.3	LRP1	rs11172113-T	0.5919	6E-8		0.0349	[0.022-0.047] unit decrease	NR [8041861] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q13.3	LRP1	rs11172113-T	0.5905	5E-6		0.0257	[0.015-0.037] unit decrease	NR [8041861] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	12q13.3	LRP1, STAT6, SDR9C7	rs11172113-T	0.55	4E-16		1.1764705	[1.12-1.22]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	12q13.3	LRP1, STAT6, SDR9C7	rs11172113-T	0.58	6E-49		1.1111112	[1.1-1.12]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	12q13.3	LRP1	rs11172113-?	NR	6E-36		1.102	[1.086-1.120]	Illumina [13763073] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	25420145	Debette S	2014-11-24	Nat Genet	Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection.	Cervical artery dissection	1,393 European ancestry cases, 14,416 European ancestry controls	659 European ancestry cases, 2,648 European ancestry controls	12q13.3	LRP1	rs11172113-T	0.61	3E-7		1.22	[1.12-1.32]	Illumina [472862]	N
1023	chr12	57527282	57527283	rs11172113	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	12q13.3	LRP1	rs11172113-?	0.57	1E-10		1.15	[1.1-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	12q13.3	LRP1	rs11172113-?	0.57	1E-6		1.12	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	12q13.3	LRP1	rs11172113-?	0.57	4E-19		1.11	[1.09-1.14]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	12q13.3	LRP1	rs11172113-?	NR	8E-6	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	12q13.3	LRP1	rs11172113-?	0.60	3E-8		1.16	[1.10-1.23]	Illumina [1246388] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12q13.3	LRP1	rs11172113-T	0.61	1E-8	(FEV1/FVC)	0.032	[0.020-0.044] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1023	chr12	57527282	57527283	rs11172113	21666692	Chasman DI	2011-06-12	Nat Genet	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	12q13.3	LRP1	rs11172113-T	0.59	4E-9		1.11	[1.08-1.15]	Affymetrix, Illumina [2608509] (imputed)	N
1023	chr12	57529442	57529443	rs11172114	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q13.3	LRP1	rs11172114-T	0.3418	9E-7		0.0334	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1023	chr12	57530340	57530341	rs17547610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q13.3	NR	rs17547610-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57530340	57530341	rs17547610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs17547610-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57530340	57530341	rs17547610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	12q13.3	NR	rs17547610-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1023	chr12	57532748	57532749	rs1385526	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	12q13.3	LRP1	rs1385526-C	0.195	6E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [5363770] (imputed)	N
1023	chr12	57532981	57532982	rs715948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.3		rs715948-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1023	chr12	57533689	57533690	rs4759277	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q13.3	NR	rs4759277-A	0.3442	9E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1023	chr12	57533689	57533690	rs4759277	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	12q13.3	LRP1	rs4759277-A	0.24	8E-10		1.34	[NR]	Illumina [747089]	N
1023	chr12	57534469	57534470	rs1466535	22055160	Bown MJ	2011-11-04	Am J Hum Genet	Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1.	Abdominal aortic aneurysm	1,737 European ancestry cases, 5,435 European ancestry controls, 129 cases	2,320 European ancestry cases, 40,011 European ancestry controls, 2,042 cases, 3,736 controls	12q13.3	LRP1	rs1466535-C	0.58	5E-10		1.15	[1.10-1.21]	Illumina [535296]	N
1024	chr12	57540750	57540751	rs7968719	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.3	LRP1	rs7968719-C	0.4861	4E-9		0.1197	[0.08-0.159] mmHg decrease	Affymetrix [NR] (imputed)	N
1024	chr12	57540847	57540848	rs7398375	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q13.3		rs7398375-C	0.43	1E-7	(East Asian)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1024	chr12	57540847	57540848	rs7398375	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12q13.3	NR	rs7398375-C	0.72	4E-10		1.09	[1.06-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
1024	chr12	57540955	57540956	rs75505823	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q13.3		rs75505823-?	NR	2E-10		0.0249231	[0.017-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1024	chr12	57561992	57561993	rs34790089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs34790089-T	NR	6E-19		0.0544	[0.042-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1024	chr12	57561992	57561993	rs34790089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q13.3	NR	rs34790089-T	NR	5E-11		0.0421	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr12	57561992	57561993	rs34790089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q13.3	NR	rs34790089-T	NR	7E-13		0.0461	[0.034-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr12	57589864	57589865	rs1800189	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q13.3	NR	rs1800189-C	0.312484	1E-10		0.021282	[0.015-0.028] unit decrease	NR [19129689] (imputed)	N
1024	chr12	57595983	57595984	rs7978567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs7978567-T	NR	1E-30		0.0292	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1024	chr12	57595983	57595984	rs7978567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q13.3	NR	rs7978567-T	NR	8E-10		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr12	57595983	57595984	rs7978567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q13.3	NR	rs7978567-T	NR	8E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1024	chr12	57595983	57595984	rs7978567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q13.3	NR	rs7978567-T	NR	5E-11		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr12	57597870	57597871	rs7965424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q13.3		rs7965424-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1024	chr12	57611284	57611285	rs113397893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q13.3	NR	rs113397893-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1024	chr12	57611284	57611285	rs113397893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q13.3		rs113397893-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1024	chr12	57611284	57611285	rs113397893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q13.3	NA	rs113397893-A	0.9231	9E-10		0.0222	[0.015-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1024	chr12	57612766	57612768	rs55836402	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	12q13.3	NXPH4	rs55836402-?	NR	1E-15		1.0905125	[1.07-1.11]	Illumina [13729857] (imputed)	N
1024	chr12	57616060	57616061	rs7485577	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.3	NR	rs7485577-G	0.6784375	1E-17	(SULF2, 8305_18_3)	0.22562118	[0.17-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1024	chr12	57618618	57618619	rs61736007	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	12q13.3	NXPH4	rs61736007-A	0.28	7E-6		0.0618	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1024	chr12	57622370	57622371	rs12826178	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	12q13.3	NR	rs12826178-T	0.0746	3E-9		0.136371	[0.092-0.181] unit decrease	NR [NR]	N
1024	chr12	57622370	57622371	rs12826178	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q13.3	NR	rs12826178-?		3E-8				NR [8377093]	N
1024	chr12	57622370	57622371	rs12826178	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12q13.3	NR	rs12826178-?		6E-11				NR [8377093]	N
1024	chr12	57622370	57622371	rs12826178	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q13.3	SHMT2, NXPH4	rs12826178-?		6E-10				NR [6786993] (imputed)	N
1024	chr12	57622370	57622371	rs12826178	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q13.3	ENSG00000202067, SHMT2	rs12826178-?	NR	9E-11		0.024255138	[0.017-0.032] unit increase	NR [7306098]	N
1024	chr12	57622370	57622371	rs12826178	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	12q13.3	LRP1, MIR1228, NDUFA4L2, NXPH4, R3HDM2, SHMT2, STAC3	rs12826178-?		4E-10		1.1494253	[1.1-1.2]	Affymetrix, Illumina [NR]	N
1024	chr12	57622370	57622371	rs12826178	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q13.3	NR	rs12826178-G	NR	1E-11		1.1764705	[NR]	Illumina [7158791] (imputed)	N
1024	chr12	57622370	57622371	rs12826178	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12q13.3	LRP1, MYO1A, NAB2, NDUFA4L2, NXPH4, R3HDM2, SHMT2, STAC3, STAT6, TAC3, TMEM194A	rs12826178-G	0.929	2E-12		1.1820331	[1.13-1.24]	Affymetrix, Illumina [9005918] (imputed)	N
1024	chr12	57626581	57626582	rs2229716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs2229716-A	NR	2E-13		0.0447	[0.033-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1024	chr12	57645788	57645789	rs11172134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q13.3		rs11172134-T	0.798974	2E-9		0.0296263	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1024	chr12	57645788	57645789	rs11172134	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12q13.3	STAC3	rs11172134-A	0.2161	4E-6		0.0064	[0.0033-0.0095] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1024	chr12	57645788	57645789	rs11172134	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12q13.3	R3HDM2, INHBC	rs11172134-T	0.81	4E-8		0.078	[0.051-0.105] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1024	chr12	57645788	57645789	rs11172134	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12q13.3	R3HDM2, INHBC	rs11172134-T	0.8	2E-7	(men)	0.095	[0.06-0.13] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1024	chr12	57648643	57648644	rs78607331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q13.3	NR	rs78607331-T	NR	6E-10		0.0361	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1024	chr12	57648643	57648644	rs78607331	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q13.3	R3HDM2	rs78607331-C	0.955251	2E-12		0.0238811	[0.017-0.031] unit decrease	Affymetrix [12370749]	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	3E-9		0.0321403	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	6E-14		0.0397634	[0.029-0.05] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-11		0.0350696	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-10		0.0337345	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-10		0.0337279	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	6E-11		0.0347798	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	5E-11		0.0348829	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	6E-13		0.0381951	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	6E-9		0.0309376	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	5E-12		0.0370241	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-8		0.0301932	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	3E-10		0.03369	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-9		0.0326107	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-8		0.029997	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-12		0.037541	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	1E-10		0.0346928	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	5E-11		0.0356291	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-8		0.0303207	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q13.3		rs10649122-A	0.817531	2E-9		0.0326698	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q13.3		rs10649122-ATCTC	NR	8E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1024	chr12	57650599	57650599	rs10649122	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q13.3	R3HDM2	rs10649122-?	NR	2E-12		0.0236	[0.018-0.029] unit decrease	Affymetrix [5701386] (imputed)	N
1024	chr12	57669971	57669972	rs12371805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q13.3		rs12371805-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	8E-15		0.0355426	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	1E-13		0.0341337	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	2E-11		0.0306533	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	4E-8		0.0254944	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	2E-10		0.0293487	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	2E-10		0.0290831	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	7E-13		0.0335172	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs56205943-G	0.761327	3E-14		0.0349604	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57679413	57679414	rs56205943	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q13.3	NR	rs56205943-G	0.759004	4E-13		0.0209185	[0.015-0.027] unit increase	Affymetrix [16585745] (imputed)	N
1025	chr12	57681796	57681798	rs754259315	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q13.3		rs754259315-CT	0.709447	2E-8		0.0260934	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57682955	57682956	rs61937595	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q13.3	NR	rs61937595-?	NR	6E-12		1.1514238	[1.11-1.19]	Affymetrix, Illumina [12447948] (imputed)	N
1025	chr12	57682955	57682956	rs61937595	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12q13.3	NAB2, STAT6, TMEM194A, LRP1, NDUFA4L2, NXPH4, R3HDM2, SHMT2, STAC3	rs61937595-?	NR	3E-11		1.133	[1.1-1.17]	Illumina [8000000] (imputed)	N
1025	chr12	57692469	57692470	rs12313762	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q13.3		rs12313762-C	0.761327	3E-12		0.0317562	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57692469	57692470	rs12313762	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	12q13.3		rs12313762-C	0.761328	5E-12		0.0321553	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57692469	57692470	rs12313762	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs12313762-T	0.201016	4E-10				Affymetrix, Illumina [24649327] (imputed)	N
1025	chr12	57692469	57692470	rs12313762	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q13.3	NR	rs12313762-T	0.235641	9E-12		0.014833	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1025	chr12	57701103	57701105	rs199839547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q13.3		rs199839547-G	NR	2E-19		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1025	chr12	57701103	57701105	rs199839547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12q13.3		rs199839547-G	NR	2E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1025	chr12	57701103	57701105	rs199839547	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.3	R3HDM2	rs199839547-G		1E-10		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	3E-12		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	3E-39		0.0574	[0.049-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	3E-12		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	9E-13		0.0328	[0.024-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	4E-10		0.0274	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	2E-20		0.0423	[0.033-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	1E-15		0.035	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	1E-13		0.0325	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr12	57711328	57711329	rs112639655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q13.3	NR	rs112639655-A	NR	4E-23		0.0454	[0.036-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1025	chr12	57714802	57714803	rs7484541	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	12q13.3	NR	rs7484541-A	0.77	3E-9		1.09	NR	NR [8853336] (imputed)	N
1025	chr12	57714802	57714803	rs7484541	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q13.3	R3HDM2	rs7484541-?	NR	8E-11		0.0427498	[0.03-0.056] unit decrease	Illumina [4804024] (imputed)	N
1025	chr12	57714802	57714803	rs7484541	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q13.3	NR	rs7484541-T	0.22775100000000004	3E-29		0.0158688	[0.013-0.019] unit increase	Affymetrix [16585854] (imputed)	N
1025	chr12	57714802	57714803	rs7484541	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q13.3	NR	rs7484541-T	0.22775100000000004	1E-17		0.014134	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
1025	chr12	57725196	57725197	rs4760355	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12q13.3	R3HDM2	rs4760355-G	0.8384	2E-8		5.578	NR z score decrease	Illumina [26237160] (imputed)	N
1025	chr12	57728775	57728776	rs7397189	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12q13.3	R3HDM2	rs7397189-?	NR	8E-21		0.0286	[0.023-0.034] unit decrease	Affymetrix [5701386] (imputed)	N
1025	chr12	57735044	57735045	rs11609805	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	12q13.3		rs11609805-G	0.759547	6E-12		0.0307397	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57744863	57744864	rs6581138	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q13.3	NR	rs6581138-A	0.2434	2E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1025	chr12	57751853	57751854	rs12313306	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q13.3	R3HDM2	rs12313306-T	0.2464	7E-65		0.076333	[0.068-0.085] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1025	chr12	57751853	57751854	rs12313306	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q13.3	R3HDM2	rs12313306-T	0.229	9E-25		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1025	chr12	57752708	57752708	rs567382472	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs567382472-C	0.769168	1E-9		0.0290493	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1025	chr12	57752708	57752708	rs567382472	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	12q13.3		rs567382472-C	0.769168	1E-8		0.0277822	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1025	chr12	57752708	57752708	rs567382472	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs567382472-C	0.769168	1E-9		0.0289762	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1025	chr12	57752708	57752708	rs567382472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q13.3		rs567382472-CT	NR	2E-34		0.0336	[0.028-0.039] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1025	chr12	57753832	57753833	rs537596349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q13.3	R3HDM2	rs537596349-A	0.149394	4E-11		0.021403883	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr12	57753834	57753835	rs555730055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q13.3	NR	rs555730055-A	0.147048	3E-11		0.018968	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1025	chr12	57754490	57754491	rs75927231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q13.3	R3HDM2	rs75927231-A	0.0671	3E-6		0.0675	[0.039-0.096] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1025	chr12	57766304	57766305	rs11172190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12q13.3		rs11172190-C	0.496296	3E-9		0.0232116	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	1E-9		0.0281021	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	2E-9		0.0280979	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	2E-8		0.0258873	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	9E-10		0.0283861	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	8E-10		0.0286456	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	6E-11		0.0303751	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	1E-10		0.0299128	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	2E-11		0.0311906	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	3E-12		0.0324613	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	4E-12		0.0323232	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	3E-11		0.0308433	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs4760254-G	0.760934	3E-11		0.0309758	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1025	chr12	57766391	57766392	rs4760254	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q13.3	R3HDM2	rs4760254-G	0.76092	3E-33		0.027987	[0.023-0.033] unit increase	Affymetrix [NR] (imputed)	N
1025	chr12	57770097	57770098	rs7971133	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q13.3	R3HDM2	rs7971133-T	0.24	5E-16	(Extracellular sulfatase Sulf-2, SULF2.8305.18.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1025	chr12	57780935	57780936	rs12315434	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	12q13.3	INHBC	rs12315434-A	0.7712	4E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1025	chr12	57780935	57780936	rs12315434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q13.3		rs12315434-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1025	chr12	57780935	57780936	rs12315434	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q13.3	intergenic	rs12315434-A	0.796	5E-7		0.04	[0.024-0.056] unit increase	Affymetrix [7947838] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	2E-8		0.025952	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	1E-10		0.0305961	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	3E-9		0.0280864	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	4E-11		0.0313786	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	1E-11		0.0316651	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	5E-10		0.0297129	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	6E-9		0.0270044	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	2E-11		0.0319473	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	2E-11		0.0319553	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	1E-10		0.0300802	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	6E-12		0.0323723	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	5E-12		0.0325344	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q13.3		rs2122982-G	0.761328	2E-10		0.0296328	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q13.3		rs2122982-A	NR	3E-26		0.0269	[0.022-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q13.3	R3HDM2	rs2122982-G	0.76139	1E-13		0.0180585	[0.013-0.023] unit increase	Affymetrix [NR] (imputed)	N
1025	chr12	57781892	57781893	rs2122982	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q13.3	R3HDM2	rs2122982-A	0.2077	3E-17		0.0079	[0.0061-0.0097] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1025	chr12	57789358	57789359	rs68147365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q13.3		rs68147365-A	NR	5E-12		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1025	chr12	57791832	57791833	rs7974833	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	12q13.3		rs7974833-T	0.76	1E-20		0.0905	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1025	chr12	57791832	57791833	rs7974833	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	12q13.3	KIAA1002	rs7974833-T	0.7574	4E-15	(EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1025	chr12	57791832	57791833	rs7974833	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12q13.3	R3HDM2	rs7974833-T	0.7574	1E-26		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs11613352-C	NR	8E-19		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs11613352-C	0.775	6E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs11613352-C	NR	4E-16		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs11613352-C	0.775	6E-15	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q13.3	intergenic	rs11613352-T	0.235	5E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	12q13.3	LRP1	rs11613352-T	0.191	1E-13	(Trans-ethnic initial)	0.028	[0.02-0.036] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q13.3	LRP1	rs11613352-T	0.191	1E-13	(Trans-ethnic initial)	0.0281	[0.02-0.036] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	12q13.3	LRP1	rs11613352-T	0.26	9E-14		0.028	[NR] mg/dL decrease	NR [NR] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q13.3	LRP1	rs11613352-T	0.26	2E-13		0.028	[NR] unit increase	NR [NR] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	12q13.3	LRP1	rs11613352-T	0.23	4E-10		2.7	[1.86-3.54] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1025	chr12	57792579	57792580	rs11613352	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q13.3	LRP1	rs11613352-T	0.24	2E-8		0.46	[0.28-0.64] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1026	chr12	57806845	57806846	rs11172205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs11172205-G	0.492451	6E-15				Affymetrix, Illumina [22063850] (imputed)	N
1026	chr12	57806845	57806846	rs11172205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q13.3	NR	rs11172205-G	0.487173	6E-18		0.01628	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1026	chr12	57807113	57807114	rs540730	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein INHBB	5,364 Icelandic ancestry individuals	NA	12q13.3		rs540730-T	0.3232	2E-20		0.176261	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
1026	chr12	57807113	57807114	rs540730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q13.3		rs540730-C	NR	2E-33		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.3	R3HDM2	rs540730-T	0.24485	3E-14		0.019698335	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q13.3	R3HDM2	rs540730-C	0.755139	6E-19		0.022783993	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q13.3	R3HDM2	rs540730-C	0.755125	4E-17		0.021738814	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q13.3	NR	rs540730-C	0.757519	3E-22		0.020787	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q13.3	NR	rs540730-C	0.757714	3E-17		0.018138	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q13.3	NR	rs540730-T	0.245025	4E-19		0.030322	[0.023-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q13.3	NR	rs540730-T	0.245622	2E-48		0.0181991	[0.016-0.021] unit increase	Affymetrix [16582621] (imputed)	N
1026	chr12	57807113	57807114	rs540730	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q13.3	NR	rs540730-T	0.245622	5E-39		0.0177235	[0.015-0.021] unit increase	Affymetrix [16582614] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	5E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	5E-12				Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	5E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	8E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	7E-19				Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	1E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q13.3	R3HDM2, INHBC	rs540730-C	NR	1E-20				Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q13.3	R3HDM2, INHBC	rs540730-C	NR	2E-12	(EA)	0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q13.3	R3HDM2, INHBC	rs540730-C	NR	1E-12		0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q13.3	R3HDM2, INHBC	rs540730-C	NR	3E-9		0.007487	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q13.3	R3HDM2, INHBC	rs540730-C	NR	2E-9	(EA)	0.0113	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr12	57807113	57807114	rs540730	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q13.3	R3HDM2	rs540730-T	0.2889	9E-13		0.0212	[0.015-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1026	chr12	57809455	57809456	rs1106766	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	12q13.3	INHBC	rs1106766-T	0.22	2E-9	(EA)	0.0061	[0.0041-0.0081] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1026	chr12	57809455	57809456	rs1106766	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	12q13.3	INHBC, R3HDM2	rs1106766-T	0.23	2E-11	(Urate)	5.16	[3.65-6.67] umol/l decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1026	chr12	57823584	57823585	rs7964492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q13.3	NR	rs7964492-C	0.238606	1E-22		0.021523	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1026	chr12	57824164	57824165	rs487722	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q13.3	R3HDM2, INHBC	rs487722-T	0.2084	2E-9		1.0276761		Affymetrix [11880941] (imputed)	N
1026	chr12	57826981	57826982	rs73119306	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q13.3	INHBC	rs73119306-A	0.759483	2E-33		0.0276532	[0.023-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1026	chr12	57826981	57826982	rs73119306	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q13.3	INHBC	rs73119306-A	0.7859	7E-65		0.0713	[0.063-0.08] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr12	57826981	57826982	rs73119306	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q13.3	NR	rs73119306-A	0.2188	2E-24	(women)	0.0628	[0.051-0.075] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr12	57826981	57826982	rs73119306	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q13.3	NR	rs73119306-A	0.2069	2E-30	(men)	0.0801	[0.066-0.094] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr12	57832071	57832072	rs145837154	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	12q13.3	NR	rs145837154-A	0.015	1E-7	(Unifrac metric)	5.1597	NR z-score increase	Illumina [5293637] (imputed)	N
1026	chr12	57835964	57835965	rs2943693	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	12q13.3	NR	rs2943693-?	NR	5E-7			[NR]	Illumina [5779266] (imputed)	N
1026	chr12	57838149	57838150	rs12423654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q13.3		rs12423654-T	0.512617	1E-8		0.0235477	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q13.3		rs61352607-T	NR	4E-14		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q13.3		rs61352607-T	NR	1E-10		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q13.3	INHBC	rs61352607-T	0.24	6E-25		10.3	z-score increase	Affymetrix [4314223] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q13.3	INHBC	rs61352607-G	0.759149	6E-43		0.0305532	[0.026-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs61352607-G	NR	5E-19		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs61352607-G	0.774	6E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs61352607-G	NR	4E-17		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs61352607-G	0.774	3E-15	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57839172	57839173	rs61352607	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	12q13.3	LRP1	rs61352607-G	0.73	1E-8		0.038	[0.024-0.052] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1026	chr12	57843184	57843185	rs145048495	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	12q13.3	INHBC	rs145048495-?	1.93237E-4	2E-16				Illumina [~ 244000]	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	1E-10		0.0271406	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	9E-13		0.0326182	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759066	8E-15		0.0362582	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	4E-10		0.0265471	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	4E-11		0.028396	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759066	2E-8		0.0269424	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	9E-10		0.0272653	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	5E-13		0.0307583	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	4E-12		0.0299466	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	6E-9		0.0263715	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	3E-9		0.0263868	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs2229357-G	0.759063	2E-12		0.0297661	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULF2	5,368 Icelandic ancestry individuals	NA	12q13.3		rs2229357-A	0.3142	8E-58		0.318289	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q13.3		rs2229357-A	NR	1E-90		0.0449	[0.041-0.049] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	12q13.3	INHBC	rs2229357-A	0.24	2E-17		0.82	[0.78-0.86]	Affymetrix [710030]	N
1026	chr12	57843710	57843711	rs2229357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-A	0.211984	5E-24				Affymetrix, Illumina [23467995] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-A	0.202129	5E-21				Affymetrix, Illumina [24653286] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-A	0.202918	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q13.3	INHBC	rs2229357-A		4E-14		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-G	NR	7E-19		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-G	0.774	6E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-G	NR	4E-17		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs2229357-G	0.774	2E-15	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57843710	57843711	rs2229357	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	12q13.3	LRP1	rs2229357-G	0.764	3E-6		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3741414-C	0.759123	8E-10		0.0281808	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q13.3		rs3741414-T	NR	6E-12		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q13.3		rs3741414-T	NR	2E-33		0.032	[0.027-0.037] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q13.3	INHBC	rs3741414-T	0.1948	1E-12				Affymetrix, Illumina [2331072] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q13.3	INHBC	rs3741414-T	0.1948	2E-13				Affymetrix, Illumina [2331072] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q13.3	NR	rs3741414-T	0.24	7E-113		0.0488	[0.045-0.053] unit decrease	NR [NR]	N
1026	chr12	57844048	57844049	rs3741414	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	12q13.3	INHBC	rs3741414-C		4E-22		0.068	[0.054-0.082] mg/dl decrease	NR [NR] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	12q13.3	INHBC	rs3741414-T	0.219	4E-13		0.452	[0.33-0.57] unit increase	Affymetrix [NR] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q13.3	INHBC	rs3741414-T	0.306	4E-24	(EA)	0.050714284	[0.041-0.061] unit decrease	Illumina [1986983] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs3741414-C	NR	5E-19		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs3741414-C	0.774	5E-18	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs3741414-C	NR	4E-17		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q13.3	NR	rs3741414-C	0.774	3E-15	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		12q13.3	R3HDM2	rs3741414-?	NR	2E-7				Affymetrix, Illumina [up to 10971307] (imputed)	N
1026	chr12	57844048	57844049	rs3741414	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q13.3	INHBC, INHBE	rs3741414-T	0.24	2E-25		0.072	[0.058-0.085] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q13.3	INHBE	rs3809114-A	0.560925	5E-13		0.016598955	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q13.3	INHBE	rs3809114-A	0.560923	1E-19		0.020698493	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q13.3	NR	rs3809114-A	0.537812	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q13.3	NR	rs3809114-A	0.559654	2E-11		0.013081	[0.0093-0.0169] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q13.3	INHBE	rs3809114-A	0.5061	7E-11		0.0177	[0.012-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1026	chr12	57848638	57848639	rs3809114	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q13.3	INHBE	rs3809114-A	0.5597	3E-11		0.02458266	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	1E-10		0.0265328	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289564	4E-9		0.024621	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	1E-10		0.026416	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289564	1E-9		0.0245489	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	9E-9		0.0244642	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	6E-11		0.0261742	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	2E-10		0.0261374	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	4E-11		0.0263448	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	4E-11		0.027063	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	6E-11		0.0269072	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57848707	57848708	rs3809113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q13.3		rs3809113-C	0.289555	5E-11		0.0266068	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57851239	57851239	rs3834467	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q13.3	INHBE	rs3834467-?	NR	6E-6		0.0291973	[0.017-0.042] unit increase	Illumina [13520550] (imputed)	N
1026	chr12	57852084	57852084	rs11463315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q13.3	INHBE	rs11463315-TA	0.437066	3E-12		0.016074633	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr12	57860825	57860826	rs4760259	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q13.3		rs4760259-T	0.318048	2E-8		0.0222239	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1026	chr12	57865820	57865821	rs2228226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs2228226-C	NR	5E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1026	chr12	57865820	57865821	rs2228226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q13.3	NR	rs2228226-C	NR	2E-15		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1026	chr12	57865820	57865821	rs2228226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q13.3	NR	rs2228226-C	NR	5E-23		0.0264	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1026	chr12	57865820	57865821	rs2228226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q13.3	NR	rs2228226-C	NR	3E-11		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1026	chr12	57865820	57865821	rs2228226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q13.3	NR	rs2228226-C	NR	9E-16		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1026	chr12	57867884	57867885	rs61758883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q13.3		rs61758883-A	NR	6E-11		0.1094	[0.077-0.142] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1026	chr12	57867884	57867885	rs61758883	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	12q13.3		rs61758883-?	NR	3E-15		0.111874	[0.083-0.141] unit decrease	NR [9800000] (imputed)	N
1026	chr12	57867884	57867885	rs61758883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q13.3	ARHGAP9	rs61758883-A	0.00480400000000003	5E-12		0.11061367	[0.079-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57867884	57867885	rs61758883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q13.3	ARHGAP9	rs61758883-A	0.00480199999999997	5E-12		0.11135399	[0.08-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr12	57900549	57900550	rs36019863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q13.3		rs36019863-T	NR	6E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q13.3		rs61741508-A	0.03	3E-16		8.18	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q13.3		rs61741508-A	0.03	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q13.3		rs61741508-A	0.03	3E-13		7.31	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q13.3	NR	rs61741508-A	0.0235	2E-8				NR [9056863] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q13.3	NR	rs61741508-A	0.0235	3E-16				NR [9056863] (imputed)	N
1026	chr12	57918084	57918085	rs61741508	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q13.3	MARS, DDIT3, MBD6, DCTN2, OS9, CDK4, MARCH9, CYP27B1, METTL1, METTL21B, RP11-571M6.15, TSFM, AVIL	rs61741508-?		2E-11				NR [7428630] (imputed)	N
1027	chr12	57946509	57946510	rs11172247	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q13.3	NR	rs11172247-?	NR	2E-9				Illumina [7760689] (imputed)	N
1027	chr12	57968714	57968715	rs1678542	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	12q13.3	KIF5A	rs1678542-?		1E-7		1.2	[1.12-1.28]	Affymetrix, Illumina [1831729] (imputed)	N
1027	chr12	57968714	57968715	rs1678542	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	12q13.3	KIF5A, PIP4K2C	rs1678542-C	0.37	9E-8		1.12	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
1027	chr12	57968737	57968738	rs11172254	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	12q13.3	NR	rs11172254-G	0.817	2E-8		0.097	[0.064-0.13] unit increase	Affymetrix, Illumina [945603] (imputed)	N
1027	chr12	57975699	57975700	rs113247976	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	12q13.3		rs113247976-T	0.016	1E-11		0.332	[0.24-0.43] unit increase	Illumina [10461755] (imputed)	N
1027	chr12	57975699	57975700	rs113247976	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	12q13.3	KIF5A	rs113247976-?	0.0149	7E-13		1.39	[1.33-1.45]	Illumina [10031630] (imputed)	N
1027	chr12	57975909	57975910	rs775248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q13.3		rs775248-G	NR	7E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1027	chr12	57976117	57976118	rs11172256	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12q13.3	NR	rs11172256-G	0.2558	2E-13		0.00192	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
1027	chr12	57976117	57976118	rs11172256	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q13.3	KIF5A	rs11172256-G	0.257	5E-8		0.0143	[0.0092-0.0194] unit increase	Illumina [~ 250000] (imputed)	N
1027	chr12	57977002	57977003	rs775249	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.3	NR	rs775249-C	0.65546875	4E-16	(SULF2, 8305_18_3)	0.21176207	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1027	chr12	57977002	57977003	rs775249	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q13.3	INHBC	rs775249-C	0.65546875	5E-6	(INHBC, 6408_2_3)	0.11884894	[0.068-0.17] unit increase	Illumina [> 1000000] (imputed)	N
1027	chr12	57993489	57993490	rs812315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs812315-A	NR	8E-12		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr12	57993489	57993490	rs812315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q13.3	NR	rs812315-A	NR	4E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr12	58003269	58003270	rs117405300	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q13.3		rs117405300-C	0.984081	2E-15		0.146679	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
1027	chr12	58003921	58003922	rs10437954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q13.3		rs10437954-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1027	chr12	58003921	58003922	rs10437954	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q13.3	ARHGEF25	rs10437954-A	0.8329	4E-13		0.3025	[0.22-0.38] mmHg decrease	Affymetrix [NR] (imputed)	N
1027	chr12	58003921	58003922	rs10437954	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q13.3	ARHGEF25	rs10437954-A	0.9036	3E-16		0.3471	[0.26-0.43] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1027	chr12	58012232	58012233	rs11613457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q13.3	NR	rs11613457-A	NR	3E-24		0.0456	[0.037-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr12	58012232	58012233	rs11613457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q13.3	NR	rs11613457-A	NR	1E-16		0.0389	[0.03-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr12	58012232	58012233	rs11613457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q13.3	NR	rs11613457-A	NR	3E-17		0.0397	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr12	58021090	58021091	rs12320537	32310165	Kim BH	2020-04-09	J Alzheimers Dis	Identification of Novel Genes Associated with Cortical Thickness in Alzheimer's Disease: Systems Biology Approach to Neuroimaging Endophenotype.	Cortical thickness	919 European ancestry individuals	NA	12q13.3	B4GALNT1	rs12320537-C	0.252	1E-6		0.034	NR unit increase	Illumina [3041429] (imputed)	N
1027	chr12	58026785	58026786	rs774898	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	12q13.3	NR	rs774898-?		3E-6	(CCL23)	0.1235	[NR] unit decrease	Illumina [NR]	N
1027	chr12	58052047	58052048	rs1678527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q13.3		rs1678527-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1027	chr12	58062666	58062667	rs10876993	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	12q13.3	CDK4	rs10876993-?	NR	4E-6				Illumina [472854]	N
1027	chr12	58064436	58064437	rs12819172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q13.3		rs12819172-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1028	chr12	58069544	58069544	rs370850844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q13.3	NR	rs370850844-CTTTTTTT	NR	3E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1028	chr12	58090300	58090301	rs12426511	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.3	OS9	rs12426511-A	0.218718	4E-8	(females)	0.01411	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1028	chr12	58090300	58090301	rs12426511	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.3	OS9	rs12426511-A	0.218718	3E-9		0.01428	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1028	chr12	58090300	58090301	rs12426511	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.3	OS9	rs12426511-A	0.218718	4E-6	(females)	0.01106	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1028	chr12	58090300	58090301	rs12426511	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q13.3	OS9	rs12426511-A	0.218718	1E-7		0.01267	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1028	chr12	58091824	58091825	rs138975273	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIG3	5,353 Icelandic ancestry individuals	NA	12q13.3		rs138975273-T	0.01132	5E-73		1.55632	[1.39-1.73] unit increase	Illumina [7506463] (imputed)	N
1028	chr12	58092088	58092088	rs10683701	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	12q13.3	OS9	rs10683701-A	0.33	1E-6		1.1	[1.06-1.15]	Illumina [133816] (imputed)	N
1028	chr12	58092553	58092554	rs7979246	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q13.3	NR	rs7979246-A	0.387	9E-7	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1028	chr12	58106835	58106836	rs701006	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q14.1	OS9	rs701006-G	NR	1E-30		1.124	NR	Affymetrix, Illumina [8278136] (imputed)	N
1028	chr12	58108051	58108052	rs1633360	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q14.1	CDK4	rs1633360-T	NR	1E-7		0.0678267	[0.03-0.106] unit increase	Illumina [8380626] (imputed)	N
1028	chr12	58108051	58108052	rs1633360	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q14.1	CDK4	rs1633360-T	0.58	9E-8	(EA)	0.08383	[0.053-0.115] unit increase	Illumina [8380626] (imputed)	N
1028	chr12	58108051	58108052	rs1633360	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q14.1	CDK4	rs1633360-T	0.58	7E-8	(EA)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1028	chr12	58108051	58108052	rs1633360	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q14.1	CDK4	rs1633360-T	0.49	1E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1028	chr12	58122564	58122565	rs238522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.1		rs238522-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1028	chr12	58122874	58122875	rs1689583	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.1	AGAP2	rs1689583-T	0.158814	4E-11		0.0166971	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
1028	chr12	58124533	58124534	rs2301551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.1	Intergenic	rs2301551-C	0.7091	8E-11	(MTAG)	0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr12	58133255	58133256	rs12368653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q14.1		rs12368653-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1028	chr12	58133255	58133256	rs12368653	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	12q14.1	AGAP2, CYP27B1	rs12368653-A	NR	2E-9	(Conditioned on rs7238078)	1.1	[1.09-1.12]	Illumina [465434]	N
1028	chr12	58143444	58143445	rs3211620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q14.1	NR	rs3211620-T	0.981453	7E-11		0.04715	[0.033-0.061] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1028	chr12	58162738	58162739	rs703842	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	12q14.1	CYP27B1, METTL1	rs703842-A	0.67	5E-11		1.23	[NR]	Illumina [302098]	N
1028	chr12	58163304	58163304	rs749972457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q14.1	METTL1	rs749972457-C	NR	4E-8		0.0186587	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1028	chr12	58179918	58179919	rs545103933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q14.1		rs545103933-T	0.994036	1E-10		0.179847	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
1028	chr12	58182061	58182062	rs201202118	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	12q14.1	TSFM	rs201202118-A	0.67	9E-22		1.13		Illumina [161311]	N
1028	chr12	58183635	58183636	rs117839344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q14.1	NR	rs117839344-G	NR	1E-19		0.0458	[0.036-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1028	chr12	58183635	58183636	rs117839344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q14.1	NR	rs117839344-G	NR	6E-14		0.0395	[0.029-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1028	chr12	58183635	58183636	rs117839344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q14.1	NR	rs117839344-G	NR	5E-12		0.0365	[0.026-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1029	chr12	58201464	58201465	rs143969105	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	12q14.1	TSFM	rs143969105-G		4E-6	(EA)	9.04	[1.23-66.26]	Affymetrix, Illumina [NR] (imputed)	N
1029	chr12	58201464	58201465	rs143969105	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	12q14.1	TSFM	rs143969105-G		4E-6		8.68	[1.21-62.08]	Affymetrix, Illumina [NR] (imputed)	N
1029	chr12	58208163	58208164	rs1021469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q14.1	Intergenic	rs1021469-A	0.3108	1E-8	(MTAG)	0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr12	58234261	58234262	rs10783853	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q14.1	NR	rs10783853-?	NR	3E-33				Affymetrix [NR]	N
1029	chr12	58242544	58242545	rs1599750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q14.1	CTDSP2	rs1599750-G	0.325096	4E-11		0.015709566	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1029	chr12	58244629	58244630	rs10783854	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Trochanter size	28,944 European ancestry individuals	8,065 European ancestry individuals, 5,711 East Asian ancestry individuals	12q14.1	CTDSP2	rs10783854-T	0.356	3E-9		0.049	[0.033-0.066] unit decrease	Illumina [33400000] (imputed)	N
1029	chr12	58251361	58251362	rs10747784	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q14.1	NR	rs10747784-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1029	chr12	58251361	58251362	rs10747784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.1		rs10747784-?	NR	8E-38				NR [~ 8900000] (imputed)	N
1029	chr12	58256713	58256714	rs10877030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q14.1		rs10877030-G	0.329612	3E-17		0.020272998	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1029	chr12	58267345	58267346	rs112976255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q14.1		rs112976255-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1029	chr12	58288792	58288793	rs6581157	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q14.1	CTDSP2, LOC100506844	rs6581157-?	NR	1E-10		0.023483973	[0.016-0.031] unit decrease	Illumina [27896057] (imputed)	N
1029	chr12	58288792	58288793	rs6581157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q14.1	Intergenic	rs6581157-T	0.3852	5E-14	(MTAG)	0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr12	58290277	58290278	rs3751331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs3751331-A	0.3797	2E-11		0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr12	58290277	58290278	rs3751331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.1	Intergenic	rs3751331-A	0.3797	2E-14	(MTAG)	0.0104	[0.0079-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr12	58292706	58292707	rs1962047	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q14.1	NR	rs1962047-A	NR	9E-12		6.823	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1029	chr12	58294343	58294344	rs61935769	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	12q14.1		rs61935769-?	NR	1E-8		0.0173	unit decrease	NR [NR]	N
1029	chr12	58301599	58301600	rs4628718	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	12q14.1		rs4628718-?	NR	1E-8				NR [7857346] (imputed)	N
1029	chr12	58301599	58301600	rs4628718	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q14.1	NR	rs4628718-?	NR	8E-6		4.467	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1029	chr12	58302435	58302436	rs4237845	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q14.1	ENSG00000245651	rs4237845-T	NR	1E-9		0.018231284	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1030	chr12	58400075	58400076	rs12368533	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	12q14.1	XRCC6BP1, LOC101927653	rs12368533-A	0.06	4E-6		1.75		Illumina [8974355] (imputed)	N
1030	chr12	58412977	58412978	rs7139165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs7139165-A	0.703	1E-11	(conditional-joint)	0.0108	[0.0077-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1030	chr12	58422641	58422642	rs12368865	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q14.1	LINC02403	rs12368865-A	0.9067	1E-11		0.0453	[0.032-0.058] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1030	chr12	58422641	58422642	rs12368865	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q14.1	NR	rs12368865-A	0.0973	7E-7	(men)	0.0579	[0.035-0.081] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1030	chr12	58435611	58435612	rs116616455	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q14.1	intergenic	rs116616455-?	NR	7E-7	(AA)	0.047	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1030	chr12	58446869	58446870	rs143275754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q14.1		rs143275754-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1030	chr12	58454270	58454271	rs12578279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q14.1	Intergenic	rs12578279-C	0.6713	5E-19	(MTAG)	0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1030	chr12	58454270	58454271	rs12578279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q14.1	Intergenic	rs12578279-G	0.3287	1E-16		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1031	chr12	58460908	58460909	rs4760364	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.1	Intergenic	rs4760364-A	0.6749	6E-18	(MTAG)	0.0152	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr12	58476809	58476810	rs10877068	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12q14.1	NA	rs10877068-T		1E-9		0.0121805	[0.0083-0.0161] unit increase	Illumina [13288253] (imputed)	N
1031	chr12	58501214	58501215	rs11172463	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	12q14.1	LINC02403, LINC02388	rs11172463-A	0.7505	9E-6		0.1272	[0.071-0.183] unit increase	NR [NR] (imputed)	N
1031	chr12	58532356	58532357	rs9738727	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q14.1	CTDSP2	rs9738727-?	NR	6E-6	(SM 18:0)	0.17604712	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1031	chr12	58574138	58574139	rs4760371	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	12q14.1	NR	rs4760371-?		1E-6		0.33	[0.21-0.51]	Illumina [539473] (imputed)	N
1031	chr12	58574138	58574139	rs4760371	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	12q14.1	NR	rs4760371-?		1E-6		0.33	[0.21-0.51]	Illumina [539473] (imputed)	N
1031	chr12	58580569	58580570	rs12821416	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q14.1	XRCC6BP1	rs12821416-C	0.864002	1E-8		0.0113929	[0.0075-0.0153] unit decrease	Affymetrix [12370749]	N
1032	chr12	58673445	58673446	rs1729799	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.1	Intergenic	rs1729799-T	0.3936	3E-9	(MTAG)	0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr12	58748445	58748446	rs770307181	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	12q14.1	intergenic	rs770307181-T	5.0E-4	1E-8		0.12091402	[0.079-0.162] m increase	Illumina [24111857] (imputed)	N
1033	chr12	58750679	58750680	rs1795708	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	ST13P8	rs1795708-G	0.178	4E-6	(Diet protein )	0.04	[NR] g/d increase	Illumina [899892]	N
1033	chr12	58833529	58833530	rs782107	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	12q14.1	NR	rs782107-G		2E-6		0.075	[0.044-0.106] SD units decrease	NR [10700000] (imputed)	N
1033	chr12	58834034	58834035	rs3847711	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	12q14.1	XRCC6BP1, LOC101927653	rs3847711-G	0.127131273	3E-7		1.095207	[1.05759005-1.134161971]	Illumina [10439017] (imputed)	N
1035	chr12	59066579	59066580	rs7968324	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	12q14.1	LRIG3	rs7968324-T	0.958	8E-7		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1035	chr12	59105744	59105745	rs11836750	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	12q14.1	NR	rs11836750-G	NR	8E-6	(random effect)	1.13	NR	NR [6904914] (imputed)	N
1036	chr12	59147733	59147734	rs117441875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	12q14.1		rs117441875-T	NR	5E-8		0.1554	[0.1-0.211] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
1036	chr12	59147733	59147734	rs117441875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	12q14.1		rs117441875-T	0.035500769	5E-8		0.15538734	[0.1-0.211] unit decrease	Illumina [13429980] (imputed)	N
1036	chr12	59179374	59179375	rs2124517	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	12q14.1		rs2124517-?	NR	8E-6		0.229	[0.13-0.33] unit decrease	Illumina [5082878] (imputed)	N
1036	chr12	59204910	59204911	rs74098390	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	12q14.1		rs74098390-T	0.874661	2E-6		0.0134068	[0.0079-0.0189] unit decrease	Illumina [13900000] (imputed)	N
1036	chr12	59205962	59205963	rs11172733	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	12q14.1	NR	rs11172733-T	0.84	1E-6		0.87	NR	Affymetrix, Illumina [6957974] (imputed)	N
1036	chr12	59221811	59221812	rs4760243	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q14.1	Intergenic	rs4760243-A	0.566	8E-6	(liability model)	0.07	[0.031-0.109] unit decrease	NR [19725427] (imputed)	N
1037	chr12	59257347	59257348	rs11172775	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIG3	5,353 Icelandic ancestry individuals	NA	12q14.1		rs11172775-T	0.0541	5E-29		0.446836	[0.37-0.53] unit decrease	Illumina [7506463] (imputed)	N
1037	chr12	59259627	59259628	rs11172782	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q14.1	LRIG3	rs11172782-?	0.29	7E-8	(AA)	1.46	[1.03-2.09]	Affymetrix, Illumina [2478304] (imputed)	N
1037	chr12	59272972	59272973	rs11172791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q14.1	LRIG3	rs11172791-C	0.045	5E-14	(Leucine-rich repeats and immunoglobulin-like domains protein 3, LRIG3.3322.52.2)	0.46	[0.34-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
1037	chr12	59289348	59289349	rs17120227	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	12q14.1		rs17120227-T	0.0653	7E-13		1.1726897	[1.12275872-1.224841197]	Affymetrix, Illumina [NR] (imputed)	N
1037	chr12	59289597	59289598	rs79056043	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	12q14.1	NR	rs79056043-G	0.05	1E-9		1.18	[1.12-1.24]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1037	chr12	59314711	59314712	rs7970054	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q14.1		rs7970054-C	0.118235166	7E-11				Illumina [7417619] (imputed)	N
1037	chr12	59352430	59352431	rs11172841	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIG3	5,353 Icelandic ancestry individuals	NA	12q14.1		rs11172841-C	0.2326	4E-28		0.233309	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
1037	chr12	59354310	59354311	rs76158750	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q14.1	LRIG3	rs76158750-C	0.90734375	2E-26	(LRIG3, 3322_52_2)	0.4450987	[0.36-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
1038	chr12	59440231	59440232	rs17121944	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q14.1	intergenic	rs17121944-?	NR	4E-6	(Dysthymic)	2.66	[NR] unit increase	Affymetrix [703012]	N
1039	chr12	59548103	59548104	rs1827183	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q14.1	RP11-150C16.1	rs1827183-A	0.8619	1E-6		0.0458	[0.027-0.064] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1039	chr12	59592398	59592399	rs10783946	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	12q14.1		rs10783946-C	0.650917	2E-8		0.0230334	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1039	chr12	59610026	59610027	rs17636351	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	12q14.1	LRIG3, SLC16A7	rs17636351-?	NR	4E-8		0.03097	[0.02-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1040	chr12	59651224	59651225	rs4468442	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	12q14.1	SLC16A7	rs4468442-A	0.3	3E-6		0.00192	[0.0011-0.0027] unit decrease	Affymetrix [1219546] (imputed)	N
1040	chr12	59746775	59746776	rs6581243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs6581243-T	0.3724	3E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1041	chr12	59816545	59816546	rs1353279	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	12q14.1	NR	rs1353279-?	NR	4E-7		0.0697	[0.043-0.097] unit decrease	Illumina [at least 560000] (imputed)	N
1041	chr12	59836960	59836961	rs1606708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.1	Intergenic	rs1606708-A	0.5973	8E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr12	59837733	59837734	rs10877283	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs10877283-T	0.5973	3E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1041	chr12	59849676	59849677	rs276000	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12q14.1	intergenic	rs276000-C	0.02	7E-7			[NR]	Affymetrix [398699]	N
1042	chr12	59944777	59944778	rs76299925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.1	AC108721.1	rs76299925-A	NR	2E-8		0.0276916	[0.018-0.037] unit increase	Affymetrix [323123] (imputed)	N
1042	chr12	59946807	59946808	rs77388321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q14.1		rs77388321-G	0.887937	3E-8		0.0359779	[0.023-0.049] unit decrease	NR [11722792] (imputed)	N
1042	chr12	59966622	59966623	rs11614580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q14.1		rs11614580-A	NR	4E-16		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1042	chr12	59966622	59966623	rs11614580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.1	RNU4-20P	rs11614580-A	NR	1E-8		0.018997	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
1042	chr12	59979633	59979634	rs11615918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.1		rs11615918-?	NR	9E-23				NR [~ 8900000] (imputed)	N
1042	chr12	59990766	59990767	rs17122673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q14.1		rs17122673-T	0.893154	2E-32		0.0795089	[0.066-0.093] unit decrease	NR [11722792] (imputed)	N
1042	chr12	59990766	59990767	rs17122673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q14.1		rs17122673-T	0.893178	7E-17		0.0555765	[0.043-0.069] unit decrease	NR [11722792] (imputed)	N
1043	chr12	60083487	60083488	rs1000708	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	12q14.1	NR	rs1000708-?	NR	7E-7	(AA, adjusted for duration of diabetes and glycemic control)			Affymetrix, Illumina [NR] (imputed)	N
1043	chr12	60086205	60086206	rs7976838	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	12q14.1	SLC16A7	rs7976838-?	NR	4E-7	(Recessive model)	2.32	unit decrease	Illumina [542562]	N
1044	chr12	60169241	60169242	rs201236531	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	12q14.1	SLC16A7	rs201236531-A	0.001153	2E-6		11.06	3.157-38.73	Illumina [164395]	N
1044	chr12	60177435	60177435	rs202103351	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	12q14.1	NR	rs202103351-TTTCTTTC		9E-6		0.1763	[0.098-0.255] SD units decrease	NR [10700000] (imputed)	N
1044	chr12	60220121	60220121	rs10627814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q14.1	RP11-813P10.2	rs10627814-TAG	NR	3E-8		0.01994	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1044	chr12	60220121	60220121	rs10627814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q14.1	RP11-813P10.2	rs10627814-TAG	NR	1E-8		0.0207085	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1044	chr12	60228856	60228857	rs7956657	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	12q14.1	SLC16A7, LOC100289417	rs7956657-A	NR	6E-6		1.67	[NR]	Illumina [up to 547389]	N
1044	chr12	60228856	60228857	rs7956657	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	12q14.1	SLC16A7, LOC100289417	rs7956657-A	0.11	4E-6	(Turkish)	1.83	[1.41-2.37]	Illumina [up to 547389]	N
1045	chr12	60298987	60298988	rs77948500	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	12q14.1	LOC100996696, PGBD3P1	rs77948500-C	0.01074	2E-6		15.85	[22.39-9.31] unit decrease	Illumina [up to 4929806] (imputed)	N
1045	chr12	60348164	60348165	rs4283018	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q14.1	NR	rs4283018-?	NR	2E-7				Affymetrix [NR]	N
1045	chr12	60364649	60364650	rs75478074	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12q14.1	SLC16A7	rs75478074-T	0.2425	5E-9		0.013217046	[0.0088-0.0177] unit decrease	Illumina [9339358] (imputed)	N
1045	chr12	60423136	60423137	rs12830284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q14.1	Intergenic	rs12830284-A	0.5291	2E-12	(MTAG)	0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1045	chr12	60423136	60423137	rs12830284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q14.1	Intergenic	rs12830284-A	0.5291	2E-13		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1045	chr12	60423136	60423137	rs12830284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.1	Intergenic	rs12830284-A	0.5289	3E-11	(MTAG)	0.011	[0.0077-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1045	chr12	60423136	60423137	rs12830284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q14.1	Intergenic	rs12830284-A	0.5289	1E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1046	chr12	60469230	60469231	rs35551159	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	12q14.1	PGBD3P1, SLC16A7	rs35551159-A	0.03	2E-7		0.55	[0.33-0.77] unit increase	Illumina [7797256] (imputed)	N
1046	chr12	60539546	60539547	rs11173340	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	12q14.1	intergenic	rs11173340-?	NR	1E-8		0.0139512	[0.0092-0.0188] unit decrease	Affymetrix [25921788] (imputed)	N
1048	chr12	60701429	60701430	rs56158317	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	12q14.1	SLC16A7, PGBD3P1	rs56158317-C	0.04	3E-6		0.59	[0.34-0.84] unit increase	Illumina [7797526] (imputed)	N
1048	chr12	60735172	60735173	rs7974425	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	intergenic	rs7974425-G	0.0050	9E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1048	chr12	60735172	60735173	rs7974425	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	intergenic	rs7974425-G	0.0050	6E-6	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
1048	chr12	60735172	60735173	rs7974425	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	intergenic	rs7974425-G	0.0050	6E-6	(Hip circumference )	0.03	[NR] cm increase	Illumina [899892]	N
1048	chr12	60748005	60748006	rs73368254	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q14.1	Intergenic	rs73368254-G	NR	5E-6		0.310425	[0.18-0.44] unit increase	Illumina [13520550] (imputed)	N
1048	chr12	60787164	60787165	rs1119988	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q14.1	SLC16A7	rs1119988-T	0.589	1E-12		0.0085	[0.0061-0.0109] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1048	chr12	60797702	60797703	rs10506410	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	12q14.1		rs10506410-?	NR	9E-6		1.03708	[1.02-1.05]	NR [688737]	N
1048	chr12	60797702	60797703	rs10506410	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	12q14.1	FAM19A2	rs10506410-?	NR	2E-6	(dominant)			Affymetrix [361034]	N
1048	chr12	60810651	60810652	rs2655898	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	intergenic	rs2655898-G	0.246	8E-6	(Fat mass deposition )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1049	chr12	60841876	60841877	rs11173470	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.1	Intergenic	rs11173470-A	0.1597	3E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1049	chr12	60879672	60879673	rs59813324	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs59813324-T	0.1983	4E-8		0.0097	[0.0062-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1049	chr12	60918486	60918487	rs4310653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q14.1		rs4310653-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1049	chr12	60947967	60947968	rs4581486	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q14.1	NR	rs4581486-A	0.224652	4E-10		0.0529816	[0.036-0.07] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1050	chr12	60964107	60964108	rs7975187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q14.1		rs7975187-G	NR	8E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1050	chr12	60964107	60964108	rs7975187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q14.1	NR	rs7975187-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1050	chr12	60964107	60964108	rs7975187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q14.1		rs7975187-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1050	chr12	60964107	60964108	rs7975187	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q14.1	NA	rs7975187-A	0.7712	4E-11		0.0137	[0.0096-0.0178] unit decrease	NR [~ 27400000] (imputed)	N
1050	chr12	60964107	60964108	rs7975187	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q14.1	NA	rs7975187-A	0.7712	4E-11		0.0137	[0.0096-0.0178] unit decrease	NR [~ 27400000] (imputed)	N
1050	chr12	60966739	60966740	rs4267103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q14.1		rs4267103-C	NR	4E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1050	chr12	60986449	60986450	rs2654670	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12q14.1	SLC16A7	rs2654670-A	0.5776	3E-11		0.0131029105	[0.0093-0.017] unit decrease	Illumina [9339358] (imputed)	N
1050	chr12	60992397	60992398	rs12810354	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRIG3	5,353 Icelandic ancestry individuals	NA	12q14.1		rs12810354-A	0.01105	1E-76		1.59317	[1.42-1.76] unit increase	Illumina [7506463] (imputed)	N
1051	chr12	61202284	61202285	rs61923789	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q14.1	NR	rs61923789-T	0.259443	8E-10		0.0494226	[0.034-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1051	chr12	61209112	61209113	rs144653428	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q14.1	NR	rs144653428-?	NR	9E-6		0.761637	[0.43-1.1] unit increase	NR [13958389] (imputed)	N
1051	chr12	61209927	61209928	rs528025666	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q14.1	RP11-154D9.1	rs528025666-C	0.9985	3E-6		1.2928	[0.75-1.83] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr12	61250813	61250814	rs11173646	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q14.1	NR	rs11173646-T	0.7362	1E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1052	chr12	61329246	61329247	rs139020584	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.1	NR	rs139020584-T	0.01394	2E-9	(C5)	0.04633	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr12	61345748	61345749	rs7139352	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	12q14.1	NR	rs7139352-?	NR	2E-6	(AA)	1.46	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1054	chr12	61488771	61488772	rs10506418	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	12q14.1	FAM19A2	rs10506418-A	0.03	2E-8		0.0261	[0.016-0.036] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1054	chr12	61549080	61549081	rs17124610	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q14.1	NR	rs17124610-C	0.983922182991986	8E-6	(IGP27)	0.6724	[0.38-0.97] unit decrease	Illumina [~ 2500000] (imputed)	N
1055	chr12	61686801	61686802	rs56401602	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	12q14.1	NR	rs56401602-?	NR	4E-6		0.034	[0.02-0.048] unit increase	Illumina [~ 7800000] (imputed)	N
1055	chr12	61703935	61703936	rs12816622	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q14.1	NR	rs12816622-?		5E-6				Illumina [4322238] (imputed)	N
1056	chr12	61845223	61845224	rs7358770	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	12q14.1	NR	rs7358770-G	NR	4E-6	(CPZe)	0.2193	[NR] unit decrease	Illumina [1190033]	N
1057	chr12	61874709	61874710	rs113361480	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	12q14.1		rs113361480-?	NR	2E-7				Affymetrix [810906]	N
1057	chr12	61906478	61906479	rs11613473	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q14.1	intergenic	rs11613473-G	NR	4E-6		0.7105401	[0.44-0.98] unit decrease	Illumina [> 6200000] (imputed)	N
1057	chr12	61907021	61907022	rs12370275	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	12q14.1	intergenic	rs12370275-?	NR	2E-6	(multivariate)			Perlegen [1871025] (imputed)	N
1057	chr12	61941357	61941358	rs73116023	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q14.1	NR	rs73116023-?	NR	4E-6		10668.801	NR unit decrease	Illumina [2379855]	N
1057	chr12	61948070	61948071	rs11174072	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	12q14.1	FAM19A2	rs11174072-?	0.01149	5E-6		15.64	[3.408-71.75]	Affymetrix [547296]	N
1057	chr12	61966533	61966534	rs1453711	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q14.1	NR	rs1453711-?	NR	7E-8				Affymetrix [NR]	N
1058	chr12	62095535	62095536	rs74570019	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q14.1	FAM19A2	rs74570019-C	NR	4E-7		0.48031154	[0.3-0.66] unit decrease	Illumina [> 6200000] (imputed)	N
1059	chr12	62234832	62234833	rs2198776	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	FAM19A2	rs2198776-A	0.284	5E-7	(BMI z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1059	chr12	62234832	62234833	rs2198776	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.1	FAM19A2	rs2198776-A	0.284	5E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1059	chr12	62250419	62250420	rs17605016	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	12q14.1	FAM19A2	rs17605016-G		2E-6		1.1878	[1.12-1.26]	Illumina [up to 4972397] (imputed)	N
1059	chr12	62252256	62252257	rs11174202	30087453	Yilmaz Z	2018-08-07	Mol Psychiatry	Examination of the shared genetic basis of anorexia nervosa and obsessive-compulsive disorder.	Anorexia nervosa or obsessive-compulsive disorder	3,495 European ancestry anorexia nervosa cases, 2,688 European ancestry obsessive-compulsive disorder cases, 18,013 European ancestry controls	NA	12q14.1	FAM19A2	rs11174202-?	NR	3E-7				NR [7461827] (imputed)	N
1059	chr12	62252256	62252257	rs11174202	28494655	Duncan L	2017-05-12	Am J Psychiatry	Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa.	Anorexia nervosa	3,495 European ancestry cases, 10,982 European ancestry controls	NA	12q14.1	FAM19A2	rs11174202-A	0.547	3E-7		1.17	[1.11-1.23]	Illumina [10641224] (imputed)	N
1060	chr12	62261409	62261410	rs3759287	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q14.1	NR	rs3759287-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1060	chr12	62261454	62261455	rs3759289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q14.1		rs3759289-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1060	chr12	62262836	62262837	rs117359675	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q14.1	FAM19A2	rs117359675-A	0.9965	2E-6		0.3189	[0.19-0.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1060	chr12	62262836	62262837	rs117359675	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q14.1	FAM19A2	rs117359675-A	0.9964	4E-6		0.3102	[0.18-0.44] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1060	chr12	62308664	62308665	rs112769843	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	12q14.1	FAM19A2	rs112769843-C		2E-6		1.8518518	[1.06-3.12]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr12	62314920	62314921	rs349885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q14.1	NR	rs349885-?	NR	3E-6		0.0083997	[0.0049-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1060	chr12	62353642	62353643	rs61941014	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q14.1	FAM19A2	rs61941014-T	0.9902	6E-6		0.3599	[0.2-0.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1060	chr12	62380068	62380069	rs138752705	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	12q14.1	NR	rs138752705-C	NR	9E-6		0.2224	[0.12-0.32] SD units increase	NR [10700000] (imputed)	N
1060	chr12	62386599	62386600	rs11174267	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.1	FAM19A2	rs11174267-A	0.139	6E-8	(AA)	0.025	unit decrease	Illumina [NR] (imputed)	N
1060	chr12	62386599	62386600	rs11174267	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	12q14.1	FAM19A2	rs11174267-?	NR	8E-7	(AA)			Illumina [up to 701491] (imputed)	N
1060	chr12	62387182	62387183	rs12815303	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.1	FAM19A2	rs12815303-G	0.86	8E-8	(AA)	0.024	unit increase	Illumina [NR] (imputed)	N
1060	chr12	62387281	62387282	rs12817007	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.1	FAM19A2	rs12817007-C	0.86	8E-8	(AA)	0.024	unit increase	Illumina [NR] (imputed)	N
1060	chr12	62387286	62387287	rs12817011	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.1	FAM19A2	rs12817011-C	0.86	8E-8	(AA)	0.024	unit increase	Illumina [NR] (imputed)	N
1061	chr12	62392547	62392548	rs17125610	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	12q14.1	FAM19A2	rs17125610-A	0.10334666666666666	9E-6		2.5882	[1.44-3.73] unit increase	Affymetrix [NR] (imputed)	N
1061	chr12	62427041	62427042	rs348688	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q14.1	USP15	rs348688-?	NR	5E-7	(phenylalanine)	0.17950986	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1061	chr12	62440044	62440045	rs116917617	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	12q14.1	FAM19A2	rs116917617-T	0.98	2E-6		0.46	[0.26-0.66] unit decrease	Illumina [14638245] (imputed)	N
1061	chr12	62460141	62460142	rs348651	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q14.1	USP15	rs348651-?	NR	3E-6	(threonine)	0.16081195	[0.094-0.228] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1061	chr12	62467713	62467714	rs17713040	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q14.1	FAM19A2, AVPR1A	rs17713040-?	NR	5E-8				Affymetrix, Illumina [18800000] (imputed)	N
1061	chr12	62467713	62467714	rs17713040	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q14.1	FAM19A2, AVPR1A	rs17713040-?	NR	3E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1061	chr12	62485471	62485472	rs1146079	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs1146079-C	0.7373	4E-8		0.0087	[0.0056-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1061	chr12	62496277	62496278	rs141480969	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	12q14.1	FAM19A2	rs141480969-T		7E-6		372.96	[209.87-536.05] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1061	chr12	62501173	62501174	rs1444250	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs1444250-T	0.859	2E-6	(AA)	0.039	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62501195	62501196	rs1444249	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs1444249-C	0.861	4E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62502249	62502250	rs11174324	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs11174324-T	0.86	2E-6	(AA)	0.039	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62502978	62502979	rs10784281	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs10784281-A	0.86	2E-6	(AA)	0.039	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62503620	62503621	rs10877792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs10877792-A	0.86	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62503772	62503773	rs11174325	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs11174325-T	0.862	5E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62504198	62504199	rs9668676	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9668676-A	0.86	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62505457	62505458	rs145861664	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs145861664-C	0.86	4E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62506494	62506495	rs9668015	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9668015-T	0.86	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62506841	62506842	rs9668369	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9668369-C	0.86	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62506901	62506902	rs12425896	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs12425896-C	0.859	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62507199	62507200	rs35194524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs35194524-G	0.859	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62507517	62507518	rs12829595	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs12829595-G	0.859	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62507588	62507589	rs9668865	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9668865-C	0.859	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62508023	62508024	rs1985875	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs1985875-A	0.859	2E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62508196	62508197	rs1975494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs1975494-G	0.862	1E-6	(AA)	0.04	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62508436	62508437	rs9739546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9739546-G	0.859	2E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62508488	62508489	rs9738294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9738294-A	0.859	3E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62509327	62509328	rs12579846	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs12579846-G	0.132	2E-6	(AA)	0.038	NR unit decrease	Illumina [NR] (imputed)	N
1061	chr12	62510494	62510495	rs1009168	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs1009168-G	0.859	2E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62513581	62513582	rs9706154	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9706154-T	0.859	2E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62514672	62514673	rs9738122	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9738122-G	0.859	2E-6	(AA)	0.039	NR unit increase	Illumina [NR] (imputed)	N
1061	chr12	62516648	62516649	rs9739682	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q14.1	FAM19A2	rs9739682-T	0.859	2E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1062	chr12	62528268	62528269	rs1245441	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q14.1	NR	rs1245441-C	0.325	2E-6	(IFNalpha_CXCL10_of_CD8p_T)			Illumina [5084123] (imputed)	N
1062	chr12	62537757	62537758	rs1348526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.1	Intergenic	rs1348526-T	0.1327	7E-9	(MTAG)	0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1062	chr12	62538147	62538148	rs4348998	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12q14.1	FAM19A2, USP15	rs4348998-G	NR	4E-6		1.2804425		Illumina [1233578] (imputed)	N
1062	chr12	62558313	62558314	rs10784285	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	12q14.1	FAM19A2	rs10784285-?		9E-6	(AA)	4.1	[NR]	Illumina [936149]	N
1062	chr12	62610859	62610860	rs11615916	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	12q14.1	USP15	rs11615916-?	NR	7E-6	(FEV1/FVC decline in asthmatics)	0.2378	[0.13-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
1062	chr12	62646555	62646556	rs11174399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q14.1		rs11174399-A	0.2008	2E-10		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1063	chr12	62664265	62664266	rs1074957	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	12q14.1		rs1074957-G	0.901225	2E-14		0.0898677	[0.067-0.113] decrease	Affymetrix [NR]	N
1063	chr12	62664271	62664272	rs1074958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q14.1	USP15, FAM19A2	rs1074958-T	0.0936	3E-9		0.03870862	[0.026-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1063	chr12	62674039	62674040	rs145178147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q14.1	USP15	rs145178147-T	0.121312	8E-13		0.024884911	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1063	chr12	62726595	62726596	rs546173111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q14.1	USP15	rs546173111-C	0.100652	3E-16		0.03065876	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1063	chr12	62743347	62743348	rs11174436	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	12q14.1	FAM19A, USP15, MON2	rs11174436-A	NR	5E-6		2.3	[1.60-3.40]	Illumina [2017629] (imputed)	N
1063	chr12	62774081	62774082	rs7970028	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	12q14.1		rs7970028-C	0.894901	3E-12		0.0857818	[0.062-0.109] decrease	Affymetrix [NR]	N
1064	chr12	62814655	62814656	rs11520126	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q14.1	NR	rs11520126-T	0.0794	1E-9		0.0121677	[0.0083-0.0161] unit increase	NR [9732723] (imputed)	N
1064	chr12	62818480	62818481	rs10877839	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q14.1	NR	rs10877839-C	0.32479838824577	9E-6	(IGP31)	0.1459	[0.082-0.21] unit decrease	Illumina [~ 2500000] (imputed)	N
1064	chr12	62818840	62818841	rs73139022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q14.1		rs73139022-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1064	chr12	62819360	62819361	rs117551406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.1	NR	rs117551406-A	0.0814964	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
1064	chr12	62820568	62820569	rs73139025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q14.1		rs73139025-A	0.0991300000000001	2E-10		0.023845911	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr12	62820568	62820569	rs73139025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q14.1	NR	rs73139025-A	0.099525	2E-14		0.023423	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1064	chr12	62822405	62822406	rs73139029	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q14.1	NR	rs73139029-A	0.858853	2E-9		0.00689471	[0.0045-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
1064	chr12	62822405	62822406	rs73139029	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q14.1	NR	rs73139029-A	0.858853	4E-6		0.00561647	[0.003-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
1064	chr12	62838229	62838230	rs113439801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q14.1	MON2	rs113439801-C	0.830021	7E-11		0.017375	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
1064	chr12	62842226	62842227	rs73139054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q14.1		rs73139054-C	NR	7E-10		0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1064	chr12	62886122	62886123	rs7301016	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q14.1	NR	rs7301016-G	0.206214031137184	8E-6	(IGP73)	0.1687	[0.095-0.243] unit decrease	Illumina [~ 2500000] (imputed)	N
1065	chr12	62921977	62921978	rs7303825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q14.1	MON2	rs7303825-G	NR	6E-9		0.021854	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1065	chr12	62921977	62921978	rs7303825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q14.1	MON2	rs7303825-G	NR	1E-8		0.0215032	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1065	chr12	62927071	62927072	rs75844935	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q14.1		rs75844935-G	0.11	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1065	chr12	63004582	63004583	rs7302017	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	12q14.1	PPM1H	rs7302017-G	0.46	5E-6		1.71	[0.97-2.45] cm increase	Affymetrix [2073674] (imputed)	N
1066	chr12	63046405	63046406	rs1498716	33751636	Wei Y	2021-03-09	Biom J	Confident identification of subgroups from SNP testing in RCTs with binary outcomes.	Response to antioxidants and zinc in age-related macular degeneration (disease progression)	450 European ancestry AREDS formula treated cases, 677 European ancestry placebo treated cases	NA	12q14.1	PPM1H	rs1498716-?	NR	3E-6				Illumina [3895495]	N
1066	chr12	63050250	63050251	rs17676109	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q14.1	Intergenic	rs17676109-?	NR	1E-6		2.4576063	[NR]	Affymetrix [492217] (imputed)	N
1066	chr12	63054659	63054660	rs12825098	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q14.1	NR	rs12825098-A	0.0471687	4E-12		0.050194	[0.036-0.064] unit increase	NR [19129689] (imputed)	N
1066	chr12	63055373	63055374	rs10877905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.1		rs10877905-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1066	chr12	63069696	63069697	rs76392993	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q14.1	NR	rs76392993-?	NR	5E-6		16.699	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1066	chr12	63096945	63096946	rs17733713	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.2	PPM1H	rs17733713-G	0.895991	3E-10		0.0189818	[0.013-0.025] unit decrease	NR [13737936] (imputed)	N
1066	chr12	63096945	63096946	rs17733713	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.2		rs17733713-?	NR	5E-10		0.019567	[0.013-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1066	chr12	63097481	63097482	rs2280068	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q14.2	C12orf61	rs2280068-?	NR	3E-7	(glycine)	0.43536425	[0.27-0.6] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1066	chr12	63111884	63111885	rs11174620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.2		rs11174620-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1066	chr12	63157789	63157790	rs73130040	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q14.2		rs73130040-?	NR	6E-7		0.3883018	[0.24-0.54] unit increase	Illumina [9842460] (imputed)	N
1066	chr12	63157914	63157915	rs73130042	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q14.2		rs73130042-?	NR	2E-6		0.3325807	[0.2-0.47] unit decrease	Illumina [9875426] (imputed)	N
1066	chr12	63157914	63157915	rs73130042	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	12q14.2		rs73130042-?	NR	5E-6		0.0945804	[0.054-0.135] unit decrease	Illumina [9939936] (imputed)	N
1066	chr12	63158161	63158162	rs342153	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the knee (with total joint replacement)	2,188 European ancestry cases, 9,939 European ancestry healthy controls	2,281 European ancestry cases, 9,194 European ancestry healthy controls	12q14.2	NR	rs342153-T	0.367712	8E-6		1.02	[1.01-1.03]	Illumina [270934]	N
1067	chr12	63179928	63179929	rs11174650	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	12q14.2	PPM1H	rs11174650-T	0.08	8E-6		0.04	[0.02-0.06] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
1067	chr12	63180815	63180816	rs549433	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.2	PPM1H	rs549433-G	0.183	4E-6	(Total energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1067	chr12	63189491	63189492	rs12296629	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	12q14.2	PPM1H	rs12296629-A	0.05	2E-7	(African American)	0.27	[0.17-0.37] unit increase	Illumina [up to 13042663] (imputed)	N
1067	chr12	63200853	63200854	rs2663961	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	12q14.2	PPM1H	rs2663961-?	NR	3E-6		0.187	[0.11-0.27] unit decrease	Illumina [7870334] (imputed)	N
1067	chr12	63216921	63216922	rs141858619	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q14.2	PPM1H	rs141858619-C	0.0119647731718833	3E-6	(F_Streptococcaceae_HB)	1.53247	[0.89-2.18] unit decrease	Illumina [7711310] (imputed)	N
1067	chr12	63299551	63299552	rs1268527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs1268527-C	0.401053	4E-10				Affymetrix, Illumina [20825802] (imputed)	N
1067	chr12	63299551	63299552	rs1268527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q14.2	NR	rs1268527-C	0.469339	2E-12		0.013599	[0.0098-0.0174] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1067	chr12	63299754	63299755	rs699579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q14.2	PPM1H	rs699579-T	0.470315	6E-12		0.0157351	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1067	chr12	63299754	63299755	rs699579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs699579-T	0.404266	9E-15				Affymetrix, Illumina [24246363] (imputed)	N
1067	chr12	63299754	63299755	rs699579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q14.2	NR	rs699579-T	0.46803	5E-17		0.015276	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1067	chr12	63299754	63299755	rs699579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q14.2		rs699579-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1067	chr12	63301297	63301298	rs771988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q14.2	NR	rs771988-C	0.536831	1E-22		0.018454	[0.015-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1067	chr12	63302821	63302822	rs771985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs771985-G	0.547728	2E-19				Affymetrix, Illumina [22063850] (imputed)	N
1067	chr12	63303766	63303767	rs812814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q14.2	PPM1H	rs812814-C	0.465416	1E-12		0.015824024	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1067	chr12	63303766	63303767	rs812814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q14.2		rs812814-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1068	chr12	63311147	63311148	rs987019	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Romboutsia ilealis abundance in stool	5,959 Finnish ancestry individuals	NA	12q14.2		rs987019-C	0.166206	8E-9		0.076308	[0.05-0.102] unit decrease	Illumina [7980478] (imputed)	N
1068	chr12	63337535	63337536	rs1695024	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid intima media thickness in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	12q14.2	intergenic	rs1695024-A	0.23	3E-7		0.031	[0.019-0.043] unit increase	Illumina [63089444] (imputed)	N
1069	chr12	63445091	63445092	rs10506458	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	12q14.2	intergenic	rs10506458-?	0.13	5E-6	(pltcoll)			Affymetrix [70897]	N
1069	chr12	63445961	63445962	rs10877945	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q14.2	LOC121498	rs10877945-A	0.304	7E-6	(Fat free mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1069	chr12	63460556	63460557	rs1495017	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q14.2	NR	rs1495017-A	0.751918	7E-9		0.0130231	[0.0086-0.0174] unit increase	NR [NR]	N
1069	chr12	63503649	63503650	rs4547160	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	12q14.2	NR	rs4547160-?	NR	4E-6				Illumina [7427422] (imputed)	N
1069	chr12	63503936	63503937	rs35575064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q14.2	NR	rs35575064-T	NR	2E-12		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1069	chr12	63516125	63516126	rs11174781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q14.2		rs11174781-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1069	chr12	63517049	63517050	rs11174782	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q14.2	PPM1H, AVPR1A	rs11174782-T	0.1306	1E-17		0.0214393	[0.017-0.026] unit decrease	Affymetrix [11880941] (imputed)	N
1069	chr12	63517355	63517356	rs9788226	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q14.2		rs9788226-C	0.8781	1E-11		0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1069	chr12	63520911	63520912	rs10877962	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q14.2	PPM1H, AVPR1A	rs10877962-T	0.4083	4E-18		1.0354		Affymetrix [11880941] (imputed)	N
1069	chr12	63520911	63520912	rs10877962	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q14.2	PPM1H, AVPR1A	rs10877962-T	0.4083	4E-18		1.0365522		Affymetrix [11880941] (imputed)	N
1069	chr12	63524452	63524453	rs7304848	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	12q14.2		rs7304848-A	0.945047	4E-6		0.0195843	[0.011-0.028] unit decrease	Illumina [13900000] (imputed)	N
1069	chr12	63531007	63531008	rs147864681	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q14.2		rs147864681-?	NR	5E-6		0.7446883	[0.43-1.06] unit decrease	Illumina [9875426] (imputed)	N
1070	chr12	63630496	63630497	rs1456038	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q14.2	AVPR1A, DPY19L2	rs1456038-G	0.469	2E-16		1.0329511		Affymetrix [11880941] (imputed)	N
1070	chr12	63630496	63630497	rs1456038	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	12q14.2	TMTC1, AVPR1A	rs1456038-?		7E-6	(corrected for APOE4 status)	0.12	[NR] unit decrease	Illumina [5137218] (imputed)	N
1070	chr12	63634486	63634487	rs7138306	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q14.2		rs7138306-A	0.4693	9E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1070	chr12	63696547	63696548	rs1546224	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q14.2		rs1546224-C	0.691359	4E-8		0.0236674	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1071	chr12	63722664	63722665	rs117939676	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q14.2	NR	rs117939676-?	NR	1E-6		2042.6246	NR unit decrease	Illumina [2379855]	N
1071	chr12	63788020	63788021	rs12231031	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	12q14.2	AVPR1A, DPY19L2	rs12231031-C	0.832	8E-6		1.27	[1.15-1.40]	Affymetrix, Illumina [12148595] (imputed)	N
1072	chr12	63834114	63834115	rs1599780	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	12q14.2	DPY19L2	rs1599780-A	NR	6E-6	(adjusted)	0.0682	[0.0978-0.0387] unit decrease	Illumina [307238]	N
1072	chr12	63930494	63930495	rs536587296	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q14.2	DPY19L2	rs536587296-T	0.9984	4E-6		0.4805	[0.28-0.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1074	chr12	64107952	64107953	rs2175709	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	12q14.2	DPY19L2, TMEM5	rs2175709-?		8E-6		1.2195122	[1.12-1.35]	Illumina [5352724] (imputed)	N
1074	chr12	64131222	64131223	rs146939285	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	12q14.2	NR	rs146939285-?	NR	6E-6		0.8516	[0.52-1.18] unit increase	Illumina [at least 560000] (imputed)	N
1074	chr12	64189064	64189065	rs7967742	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of premeditation	22,774 European ancestry individuals	NA	12q14.2	TMEM5	rs7967742-G	0.1012	6E-7		0.081	[0.049-0.113] unit increase	Illumina [11455628] (imputed)	N
1075	chr12	64264836	64264837	rs11175194	25134534	Chen K	2014-08-19	Nat Commun	Genome-wide association study identifies new susceptibility loci for epithelial ovarian cancer in Han Chinese women.	Epithelial ovarian cancer	1,044 Han Chinese ancestry cases, 1,172 Han Chinese ancestry controls	1,452 Han Chinese ancestry cases, 2,803 Han Chinese ancestry controls	12q14.2	SRGAP1	rs11175194-G	0.59	1E-7		1.19	[1.02-1.39]	Illumina [710714]	N
1075	chr12	64265723	64265724	rs11175195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q14.2		rs11175195-T	NR	3E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1075	chr12	64283013	64283014	rs17099893	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q14.2	SRGAP1	rs17099893-A	0.06	1E-11		0.95	[0.68-1.22] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1075	chr12	64284282	64284283	rs4346062	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q14.2	SRGAP1	rs4346062-G	0.0559	7E-11		0.9548	[0.67-1.24] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1075	chr12	64290061	64290062	rs112103252	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	12q14.2	NR	rs112103252-G	0.0106596	8E-8		1.157	[1.1-1.21]	Affymetrix [7791636] (imputed)	N
1075	chr12	64312609	64312610	rs12422918	28512992	Joo YB	2017-05-16	Int J Rheum Dis	Association of CD8+ T-cells with bone erosion in patients with rheumatoid arthritis.	Bone erosion in rheumatoid arthritis	385 Korean ancestry cases, 326 Korean ancestry controls	NA	12q14.2	SRGAP1	rs12422918-?	NR	4E-6		2.45	[1.67-3.58]	Illumina [439289]	N
1076	chr12	64421547	64421548	rs6581525	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	12q14.2	SRGAP1	rs6581525-G	0.38	3E-6		2.05		Illumina [983392]	N
1076	chr12	64421721	64421722	rs6581526	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q14.2	NR	rs6581526-?	NR	2E-17				Affymetrix [NR]	N
1076	chr12	64471306	64471307	rs789709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.2		rs789709-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1076	chr12	64485359	64485360	rs789744	34216462	Pistoni L	2021-07-03	Carcinogenesis	Associations between pancreatic expression quantitative traits and risk of pancreatic ductal adenocarcinoma.	Pancreatic ductal adenocarcinoma	7,207 European ancestry cases, 7,062 European ancestry controls	2,039 Japanese ancestry cases, 32,592 Japanese ancestry controls, 4,467 cases, 4,130 controls	12q14.2		rs789744-A	0.25	4E-6		0.9	[0.86-0.94]	Illumina [7509345] (imputed)	N
1077	chr12	64508257	64508258	rs10878105	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q14.2	Intergenic	rs10878105-T	0.477	5E-8	(MTAG)	0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1077	chr12	64521566	64521567	rs10878106	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.2	Intergenic	rs10878106-C	0.7579	8E-9	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1077	chr12	64540959	64540960	rs7131691	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.2	Intergenic	rs7131691-A	0.4702	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1077	chr12	64564068	64564069	rs722526	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.2	C12orf66	rs722526-A	0.492252	9E-11		0.0119848	[0.0084-0.0156] unit decrease	NR [13737936] (imputed)	N
1077	chr12	64606438	64606439	rs790006	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	12q14.2	FLJ32549	rs790006-?		8E-6				Affymetrix, Illumina [1348798]	N
1078	chr12	64725713	64725714	rs112045010	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	12q14.2	NR	rs112045010-C	NR	5E-6		0.9056	NR unit increase	Illumina [4533042] (imputed)	N
1078	chr12	64727455	64727456	rs7487873	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q14.2	NR	rs7487873-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1079	chr12	64754562	64754563	rs11175362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q14.2	RPS11P6, C12orf56	rs11175362-A	NR	3E-8		0.0182954	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1079	chr12	64758934	64758935	rs10128803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q14.2		rs10128803-A	NR	1E-9		0.0222	[0.015-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1079	chr12	64790647	64790648	rs7489144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q14.2		rs7489144-C	NR	9E-12		0.0254	[0.018-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1079	chr12	64820383	64820384	rs11175388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q14.2	XPOT	rs11175388-A	0.571718	4E-9		0.01312789	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1079	chr12	64850977	64850978	rs11175398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q14.2	NR	rs11175398-A	0.570799	1E-10		0.01254	[0.0087-0.0164] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1079	chr12	64861373	64861374	rs10128757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q14.2		rs10128757-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1079	chr12	64877052	64877053	rs4075094	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs4075094-A	NR	2E-9		0.1	[0.061-0.139] unit decrease	Illumina [10461755] (imputed)	N
1079	chr12	64877052	64877053	rs4075094	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	12q14.2		rs4075094-A	0.112	2E-8		0.098	[0.063-0.133] unit decrease	Illumina [10461755] (imputed)	N
1080	chr12	64881966	64881967	rs74654358	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	12q14.2	TBK1	rs74654358-?	0.0425	5E-9	(EA)	1.22	[1.14-1.30]	Illumina [10031630] (imputed)	N
1080	chr12	64881966	64881967	rs74654358	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	12q14.2	TBK1	rs74654358-A	0.049	7E-8	(linear mixed model)	1.21	[NR]	Illumina [8697640] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q14.2		rs11175421-T	NR	9E-10		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q14.2		rs11175421-T	NR	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q14.2	RP11-439H13.2, TBK1	rs11175421-T	0.558729	9E-10		0.013847955	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q14.2	RP11-439H13.2, TBK1	rs11175421-T	0.558744	2E-10		0.0143509805	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q14.2	RP11-439H13.2, TBK1	rs11175421-T	0.55868	3E-9		0.013329607	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64898556	64898557	rs11175421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q14.2	RP11-439H13.2, TBK1	rs11175421-T	0.558689	9E-10		0.013753738	[0.0094-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64901245	64901246	rs7956653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q14.2	RP11-439H13.2	rs7956653-G	0.559444	3E-9		0.013322385	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64901245	64901246	rs7956653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q14.2	NR	rs7956653-G	0.557414	1E-11		0.012788	[0.0091-0.0165] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1080	chr12	64913236	64913237	rs9668978	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	12q14.2	TBK1, RASSF3	rs9668978-T	0.288943856	6E-7		1.0957873	[1.057066927-1.135925946]	Illumina [10439017] (imputed)	N
1080	chr12	64917041	64917042	rs150695384	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	12q14.2	TBK-1	rs150695384-C	0.99	5E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1080	chr12	64934071	64934072	rs34927483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q14.2		rs34927483-T	NR	4E-8		0.057	[0.037-0.077] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q14.2		rs1245035-A	NR	2E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q14.2	NR	rs1245035-A	0.628758	3E-12		0.016001137	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q14.2		rs1245035-A	0.628732	4E-13		0.016652703	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs1245035-A	0.549187	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q14.2	NR	rs1245035-A	0.627427	5E-14		0.014435	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs1245035-A	0.577451	4E-13				Affymetrix, Illumina [23114412] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q14.2	NR	rs1245035-A	0.628096	3E-16		0.01631	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1080	chr12	64976048	64976049	rs1245035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q14.2		rs1245035-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1080	chr12	64976849	64976850	rs867400	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	12q14.2	RASSF3	rs867400-T	0.424386	2E-7		0.334053	[0.21-0.46] unit decrease	Affymetrix [~ 7800000] (imputed)	N
1080	chr12	64976849	64976850	rs867400	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12q14.2	RASSF3	rs867400-C	0.43	5E-19		0.2983	[0.23-0.36] unit increase	Affymetrix [19941912] (imputed)	N
1080	chr12	64978281	64978282	rs76152526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q14.2		rs76152526-T	NR	2E-8		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q14.2		rs1716505-G	NR	3E-66		0.0351	[0.031-0.039] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q14.2		rs1716505-G	0.47071	1E-9		0.0214065	[0.015-0.028] unit increase	Illumina [13478928] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	12q14.2		rs1716505-G	0.327149	8E-15		3.1130774	[2.33-3.9] unit increase	NR [NR]	N
1080	chr12	65005078	65005079	rs1716505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q14.2	RASSF3	rs1716505-G	0.318485	5E-31		0.030296447	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q14.2	RASSF3	rs1716505-G	0.31845	1E-78		0.04841262	[0.043-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs1716505-G	0.353471	5E-100				Affymetrix, Illumina [24588908] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q14.2	NR	rs1716505-G	0.32197	3E-96		0.041505	[0.038-0.045] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.2	NR	rs1716505-C	0.677557	9E-202				Affymetrix, Illumina [17210439] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q14.2	NR	rs1716505-C	0.680846	9E-201		0.062023	[0.058-0.066] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q14.2	RASSF3	rs1716505-G	0.3217	2E-28		0.04401915	[0.036-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1080	chr12	65005078	65005079	rs1716505	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q14.2	RASSF3	rs1716505-G	0.3217	6E-66		0.06760916	[0.06-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr12	65006357	65006358	rs1795616	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q14.2		rs1795616-C	0.895	2E-28				Affymetrix [10369434] (imputed)	N
1080	chr12	65007106	65007107	rs12818251	30134085	Zhang H	2018-07-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive flexibility assessed by the Wisconsin Card Sorting Test.	Cognitive flexibility	2,589 African American individuals, 2,284 European ancestry individuals	NA	12q14.2	MIR548C	rs12818251-?	NR	8E-7	(EA)			Illumina [9722417] (imputed)	N
1080	chr12	65007681	65007682	rs113373353	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	12q14.2	RASSF3	rs113373353-T		2E-17	(PLT)	0.055	[0.043-0.067] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
1080	chr12	65009242	65009243	rs10878200	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q14.2		rs10878200-C	0.753	3E-14				Affymetrix [10369434] (imputed)	N
1081	chr12	65012823	65012824	rs7968403	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q14.2	NR	rs7968403-T	NR	6E-15		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1081	chr12	65012823	65012824	rs7968403	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q14.2	RASSF3	rs7968403-T	0.64	3E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1081	chr12	65012950	65012951	rs117458648	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Tepidanaerobacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	12q14.2		rs117458648-T	0.0127054	2E-8		0.165585	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1081	chr12	65016165	65016166	rs77545561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q14.2	RASSF3	rs77545561-C	0.00948800000000005	9E-26		0.12771602	[0.1-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr12	65028102	65028103	rs184183165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q14.2	RASSF3	rs184183165-C	0.044038	1E-15		0.044273075	[0.033-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr12	65028102	65028103	rs184183165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q14.2	RASSF3	rs184183165-C	0.044046	1E-22		0.053196795	[0.043-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr12	65033142	65033143	rs68054310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q14.2	RASSF3	rs68054310-A	0.0996	2E-44		0.08446812	[0.073-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1081	chr12	65033148	65033149	rs78689302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q14.2	RASSF3	rs78689302-G	0.101068	7E-18		0.03411428	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr12	65035221	65035222	rs11175492	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q14.2	RASSF3	rs11175492-G	0.0991	3E-21		0.05787731	[0.046-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1081	chr12	65038014	65038015	rs7296498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q14.2	RASSF3	rs7296498-C	0.101805	4E-41		0.051977128	[0.044-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr12	65060312	65060313	rs117543282	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q14.2		rs117543282-G	0.955	7E-15				Affymetrix [10369434] (imputed)	N
1081	chr12	65075331	65075332	rs1244869	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q14.2	RASSF3	rs1244869-T	0.632	6E-10		0.0153	[0.01-0.02] unit increase	Affymetrix [19819130] (imputed)	N
1081	chr12	65075331	65075332	rs1244869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q14.2		rs1244869-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1082	chr12	65164782	65164783	rs2620709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q14.3		rs2620709-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1082	chr12	65224219	65224220	rs150781447	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Proinsulin levels (late-phase conversion)	up to 8,229 Finnish ancestry non-diabetic individuals	NA	12q14.3	TBC1D30	rs150781447-T	0.02	1E-16		0.204	[0.15-0.25] unit increase	Illumina [242071]	N
1082	chr12	65236888	65236889	rs79216453	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q14.3	TBC1D30	rs79216453-A	NR	4E-6		0.6127718	[0.35-0.88] unit decrease	Illumina [> 6200000] (imputed)	N
1082	chr12	65252117	65252118	rs939876	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	12q14.3	TBC1D30	rs939876-?	NR	2E-6	(TrailsB)			Illumina [up to 563855]	N
1083	chr12	65330765	65330766	rs465530	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	12q14.3	FLJ41278	rs465530-?	NR	4E-8				Affymetrix [905761]	N
1083	chr12	65372995	65372996	rs117529438	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Cognitive impairment	355 European ancestry cases, 6,190 European ancestry controls	NA	12q14.3		rs117529438-C	0.05	2E-7		1.95	[1.31-3.84]	Illumina [19468843] (imputed)	N
1083	chr12	65384589	65384590	rs78450446	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	12q14.3	NR	rs78450446-C	0.878216	4E-6		1.1389521	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
1083	chr12	65386344	65386345	rs3741739	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	398 Hispanic or Latin American male individuals	NA	12q14.3	LINC02231	rs3741739-T	0.428	7E-6		0.08	unit decrease	Illumina [5510858] (imputed)	N
1083	chr12	65387624	65387625	rs10459261	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	12q14.3	NR	rs10459261-G	0.07428	5E-6		0.2664	[0.15-0.38] unit decrease	Illumina [34985077] (imputed)	N
1083	chr12	65401717	65401718	rs269790	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs269790-?	NR	5E-11	(right hippocampus)			NR [9227495] (imputed)	N
1083	chr12	65401717	65401718	rs269790	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs269790-?	NR	1E-11	(left hippocampus)			NR [9227495] (imputed)	N
1083	chr12	65403075	65403076	rs269791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs269791-?	NR	5E-10	(left hippocampus)			NR [9227495] (imputed)	N
1083	chr12	65403075	65403076	rs269791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs269791-?	NR	3E-12	(right hippocampus)			NR [9227495] (imputed)	N
1084	chr12	65406132	65406133	rs11175628	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q14.3	LINC02231, WIF1	rs11175628-?	NR	1E-8		0.669	[0.45-0.89] unit decrease	Affymetrix [11100000] (imputed)	N
1084	chr12	65471466	65471467	rs2289936	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	WIF1	rs2289936-G	0.97	4E-6	(AA)	0.047	unit increase	Illumina [NR] (imputed)	N
1084	chr12	65483621	65483622	rs7397906	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7397906-?	NR	9E-12	(right hippocampus)			NR [9227495] (imputed)	N
1084	chr12	65521483	65521525	rs147225968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs147225968-?	NR	4E-17	(right hippocampus)			NR [9227495] (imputed)	N
1084	chr12	65521483	65521525	rs147225968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs147225968-?	NR	3E-14	(left hippocampus)			NR [9227495] (imputed)	N
1084	chr12	65534623	65534624	rs6581612	22504421	Bis JC	2012-04-15	Nat Genet	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q14.3	WIF1	rs6581612-C	0.27	7E-11		63.3	[44.29-82.31] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1085	chr12	65542577	65542578	rs7307410	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q14.3	LEMD3	rs7307410-C	0.26	8E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1085	chr12	65542577	65542578	rs7307410	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q14.3	LEMD3	rs7307410-C	0.26	5E-7	(men)	0.033	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1085	chr12	65560151	65560152	rs10878236	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10878236-?	NR	2E-9	(left hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65560151	65560152	rs10878236	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10878236-?	NR	2E-11	(right hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65582187	65582188	rs138916004	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	12q14.3	LEMD3	rs138916004-G	0.0217	1E-8		3.171	[2.131-4.719]	Affymetrix, Illumina [14074516] (imputed)	N
1085	chr12	65622181	65622182	rs2030121	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2030121-?	NR	2E-11	(right hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65622181	65622182	rs2030121	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2030121-?	NR	2E-11	(left hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65654044	65654045	rs11175702	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs11175702-?	NR	1E-11	(left hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65662473	65662474	rs7294862	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7294862-?	NR	6E-16	(left hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65662473	65662474	rs7294862	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7294862-?	NR	1E-16	(right hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65664974	65664975	rs10878255	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10878255-?	NR	1E-18	(right hippocampus)			NR [9227495] (imputed)	N
1085	chr12	65666389	65666390	rs10784445	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q14.3	LEMD3, MSRB3	rs10784445-?	NR	2E-14		0.02427999	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
1086	chr12	65670480	65670481	rs79623590	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs79623590-?	NR	2E-13	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65670480	65670481	rs79623590	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs79623590-?	NR	1E-12	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65677085	65677086	rs2164968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2164968-?	NR	7E-14	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65677085	65677086	rs2164968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2164968-?	NR	4E-14	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65683909	65683909	rs144438880	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs144438880-?	NR	6E-18	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65687459	65687460	rs73117792	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs73117792-?	NR	6E-18	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65687459	65687460	rs73117792	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs73117792-?	NR	1E-16	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65691842	65691843	rs181069740	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MSRB3	rs181069740-?	NR	8E-9	(female)	0.768561	[NR] unit increase	Affymetrix [NR] (imputed)	N
1086	chr12	65715188	65715189	rs76997872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs76997872-?	NR	3E-8	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65715189	65715190	rs75746601	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs75746601-?	NR	1E-8	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	12q14.3		rs17178006-?	NR	3E-26				NR [9705931] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q14.3	MSRB3	rs17178006-T	0.885	2E-11		0.0197	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q14.3	VCAN	rs17178006-?		3E-36				NR [7428630] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	7E-10	(right posterior cingulate)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	6E-35	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	6E-35	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	2E-9	(left rostral anterior cingulate)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	1E-9	(right amygdala)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs17178006-?	NR	1E-8	(left amygdala)			NR [9227495] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Presubiculum volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	12q14.3	HRK	rs17178006-G	WIF1, LEMD3, MSRB3	2E-15		5.61	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA4 volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178006-G	NR	3E-19		7.33	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA3 volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178006-G	NR	9E-19		7.76	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA1 volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178006-G	NR	8E-19		6.48	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA1 volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178006-G	NR	6E-28		21.43	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal fissure volume	21,297 European ancestry individuals	NA	12q14.3	LEMD3, MSRB3, WIF1	rs17178006-G	NR	2E-13		5.65	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178006-G	NR	5E-21		8.84	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	12q14.3	MSRB3	rs17178006-?	NR	3E-7	(Hippocampus, EA)	44.27	[27.43-61.11] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65718298	65718299	rs17178006	22504421	Bis JC	2012-04-15	Nat Genet	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q14.3	MSRB3	rs17178006-G	0.10	5E-11		123.8	[86.76-160.84] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1086	chr12	65719228	65719229	rs6581627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs6581627-?	NR	4E-39				NR [~ 8900000] (imputed)	N
1086	chr12	65722694	65722695	rs79708980	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q14.3	MSRB3	rs79708980-G	NR	5E-6		0.16894771	[0.092-0.246] unit decrease	Illumina [> 6200000] (imputed)	N
1086	chr12	65724220	65724221	rs7967829	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides clarus abundance in stool	5,959 Finnish ancestry individuals	NA	12q14.3		rs7967829-T	0.309504	3E-8		0.092082	[0.06-0.124] unit increase	Illumina [7980478] (imputed)	N
1086	chr12	65724220	65724221	rs7967829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7967829-?	NR	1E-19	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65726648	65726649	rs182408739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	MSRB3	rs182408739-C	0.999	1E-6	(AA)	0.299	unit increase	Illumina [NR] (imputed)	N
1086	chr12	65740680	65740681	rs76302221	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Butyricimonas sp900258545 abundance in stool	5,959 Finnish ancestry individuals	NA	12q14.3		rs76302221-A	0.312574	4E-8		0.0789291	[0.051-0.107] unit increase	Illumina [7980478] (imputed)	N
1086	chr12	65755542	65755543	rs2218069	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.3	MSRB3	rs2218069-A	0.317649	9E-15		0.0154664	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
1086	chr12	65755542	65755543	rs2218069	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs2218069-?	NR	4E-9		0.0141744	[0.0098-0.0186] unit increase	Affymetrix [20259828] (imputed)	N
1086	chr12	65762057	65762058	rs12229918	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		12q14.3	MSRB3	rs12229918-C	NR	7E-14		0.218	[0.16-0.27] unit decrease	Illumina [2446724] (imputed)	N
1086	chr12	65762057	65762058	rs12229918	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		12q14.3	MSRB3	rs12229918-C	NR	2E-9		0.149	[0.1-0.198] unit increase	Illumina [2446724] (imputed)	N
1086	chr12	65765943	65765944	rs17178139	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs17178139-A	NR	2E-20		58.08	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65766281	65766282	rs11611334	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Subiculum volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs11611334-G	NR	2E-13		6.97	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65766281	65766282	rs11611334	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume	21,297 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs11611334-G	NR	6E-17		9.66	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65766497	65766498	rs10784447	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10784447-?	NR	3E-11	(right inferior parietal)			NR [9227495] (imputed)	N
1086	chr12	65782039	65782040	rs12810744	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	12q14.3	NR	rs12810744-T	0.616	2E-6		0.0086	[0.0051-0.0121] unit increase	NR [~ 27400000] (imputed)	N
1086	chr12	65783377	65783378	rs10506525	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	12q14.3	POU3F3	rs10506525-?		5E-8				NR [7428630] (imputed)	N
1086	chr12	65783377	65783378	rs10506525	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	12q14.3	MSRB3	rs10506525-C	0.27	6E-9				Illumina [300766]	N
1086	chr12	65783377	65783378	rs10506525	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	12q14.3	MSRB3	rs10506525-C	0.27	9E-7				Illumina [300766]	N
1086	chr12	65789203	65789204	rs12368809	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q14.3		rs12368809-T	0.35	5E-62		16.63	z score increase	Affymetrix [9061022] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q14.3	NR	rs10878269-T	0.3604	1E-17				NR [9056863] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q14.3	EIF2B5, ABCF3	rs10878269-?		2E-24				NR [7428630] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q14.3	WIF1, LEMD3, MSRB3	rs10878269-?		3E-46				NR [7428630] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	12q14.3	NR	rs10878269-C	NR	8E-10		0.01034	[0.007-0.0136] unit decrease	NR [11010159] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	12q14.3	NR	rs10878269-C	NR	7E-8		0.00763	[0.0049-0.0104] unit decrease	NR [11010159] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	12q14.3	NR	rs10878269-C	NR	2E-16		0.00885643	[0.0067-0.011] unit decrease	NR [11010159] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	12q14.3	NR	rs10878269-C	NR	5E-18	(adjusted for BMI)	0.00921	[0.0071-0.0113] unit decrease	NR [11010159] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10878269-?	NR	1E-16	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65791462	65791463	rs10878269	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	12q14.3	NR	rs10878269-T	0.3647	4E-13		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
1086	chr12	65793152	65793153	rs12825748	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q14.3	MSRB3	rs12825748-C	0.3087	7E-9		0.0158	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1086	chr12	65793152	65793153	rs12825748	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q14.3	MSRB3	rs12825748-C	0.3087	2E-14		0.0196	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1086	chr12	65793152	65793153	rs12825748	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q14.3	MSRB3	rs12825748-C	0.3087	6E-15		0.0198	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1086	chr12	65796309	65796310	rs4762080	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs4762080-?	NR	2E-11	(right hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65796309	65796310	rs4762080	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs4762080-?	NR	1E-8	(left hippocampus)			NR [9227495] (imputed)	N
1086	chr12	65796309	65796310	rs4762080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q14.3		rs4762080-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1086	chr12	65797095	65797096	rs2336713	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	12q14.3	MSRB3	rs2336713-?		2E-13	(Inferior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65797095	65797096	rs2336713	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	12q14.3	MSRB3	rs2336713-?		3E-23	(Inferior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1086	chr12	65797095	65797096	rs2336713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	12q14.3	NR	rs2336713-?		5E-11				NR [7428630] (imputed)	N
1086	chr12	65797105	65797106	rs2336714	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q14.3	NR	rs2336714-T	0.3586	2E-24	(Inferior Parietal)	32.228397	[26.03-38.43] unit decrease	Affymetrix, Illumina [NR]	N
1087	chr12	65813625	65813626	rs55972016	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs55972016-?	NR	6E-29	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65813625	65813626	rs55972016	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs55972016-?	NR	5E-27	(left hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65824669	65824670	rs1494502	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	12q14.3	MSRB3	rs1494502-G	0.362	1E-9		0.025	[0.017-0.033] unit increase	Affymetrix [up to 27624732] (imputed)	N
1087	chr12	65824845	65824846	rs1389799	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs1389799-?	NR	4E-19	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65824845	65824846	rs1389799	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q14.3	MSRB3	rs1389799-A	0.636	1E-10		0.0079	[0.0055-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	12q14.3	ROR1	rs61921502-?		2E-9				NR [7428630] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs61921502-?	NR	5E-29	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs61921502-?	NR	3E-29	(left hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	12q14.3	NR	rs61921502-T	NR	2E-18		8.743	NR z score increase	NR [9145464] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	28098162	Hibar DP	2017-01-18	Nat Commun	Novel genetic loci associated with hippocampal volume.	Hippocampal volume	26,814 European ancestry individuals	up to 3,863 European ancestry individuals, up to 562 African American individuals, up to 886 Asian ancestry individuals, up to 1,411 Mexican American individuals	12q14.3	MSRB3	rs61921502-T	0.8466	2E-19	(EA)	9.017	[NR] z score increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1087	chr12	65832467	65832468	rs61921502	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	12q14.3	MSRB3	rs61921502-T	0.84	7E-11	(Hippocampus, EA)	39.9	[27.90-51.90] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1087	chr12	65842257	65842258	rs1494508	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	12q14.3	MSRB3	rs1494508-A	0.479	2E-6	(Novelty seeking)	0.2	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
1087	chr12	65846230	65846231	rs6581635	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs6581635-?	NR	3E-8	(left inferior parietal)			NR [9227495] (imputed)	N
1087	chr12	65856150	65856151	rs60493340	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q14.3		rs60493340-G	0.454525769	4E-19				Illumina [7417619] (imputed)	N
1087	chr12	65861283	65861284	rs931550	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs931550-?	NR	2E-21	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65861816	65861817	rs11175773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.3		rs11175773-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1087	chr12	65862789	65862790	rs2015333	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2015333-?	NR	2E-21	(left hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65874955	65874956	rs73123652	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q14.3	NR	rs73123652-?		7E-19				NR [7428630] (imputed)	N
1087	chr12	65874955	65874956	rs73123652	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q14.3	STAB1, NT5DC2, SMIM4, PBRM1, GNL3, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, RP5-966M1.6	rs73123652-?		1E-18				NR [7428630] (imputed)	N
1087	chr12	65881018	65881019	rs11175781	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs11175781-?	NR	5E-10	(right inferior parietal)			NR [9227495] (imputed)	N
1087	chr12	65901139	65901140	rs7306322	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7306322-?	NR	6E-10	(left inferior parietal)			NR [9227495] (imputed)	N
1087	chr12	65902264	65902265	rs145775785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q14.3	NR	rs145775785-T	0.014842000000000022	6E-10		0.0228582	[0.016-0.03] unit increase	Affymetrix [16582909] (imputed)	N
1087	chr12	65902264	65902265	rs145775785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q14.3	NR	rs145775785-T	0.014842000000000022	2E-6		0.0197998	[0.012-0.028] unit increase	Affymetrix [16582965] (imputed)	N
1087	chr12	65902264	65902265	rs145775785	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q14.3	MSRB3	rs145775785-T	0.015273	6E-8		0.060894	[0.039-0.083] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q14.3		rs79487293-T	0.33	3E-110		22.31	z score increase	Affymetrix [9061022] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q14.3		rs79487293-T	0.33	1E-44		14.0	z score increase	Affymetrix [9061022] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q14.3	NR	rs79487293-T	0.3274	1E-17				NR [9056863] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q14.3	NR	rs79487293-T	0.3029	1E-7	(Lateral Orbitofrontal)	7.9062366	[4.97-10.84] unit decrease	Affymetrix, Illumina [NR]	N
1087	chr12	65905125	65905126	rs79487293	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs79487293-?	NR	5E-14	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs79487293-?	NR	1E-8	(right inferior lateral ventricle)			NR [9227495] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs79487293-?	NR	1E-15	(left hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65905125	65905126	rs79487293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q14.3		rs79487293-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1087	chr12	65906483	65906484	rs7978301	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7978301-?	NR	7E-16	(left hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65906483	65906484	rs7978301	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7978301-?	NR	5E-9	(right superior parietal)			NR [9227495] (imputed)	N
1087	chr12	65906483	65906484	rs7978301	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7978301-?	NR	1E-14	(right hippocampus)			NR [9227495] (imputed)	N
1087	chr12	65913959	65913960	rs1472259	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs1472259-?	NR	2E-10	(right inferior parietal)			NR [9227495] (imputed)	N
1088	chr12	65933645	65933646	rs2256036	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2256036-?	NR	2E-8	(left hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65933645	65933646	rs2256036	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs2256036-?	NR	1E-8	(right hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65940680	65940681	rs4077464	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs4077464-?	NR	4E-14		0.0618333	[0.046-0.078] unit decrease	Affymetrix [20259828] (imputed)	N
1088	chr12	65952148	65952149	rs11832031	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs11832031-?	NR	2E-21		0.0235477	[0.019-0.028] unit increase	Affymetrix [20259828] (imputed)	N
1088	chr12	65952148	65952149	rs11832031	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q14.3	LOC100507065	rs11832031-T	0.232263	6E-8	(men)	0.030748	[0.019-0.043] unit increase	NR [17166351] (imputed)	N
1088	chr12	65952148	65952149	rs11832031	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q14.3	LOC100507065	rs11832031-T	0.230803	1E-13		0.0274508	[0.02-0.035] unit increase	NR [17166351] (imputed)	N
1088	chr12	65952148	65952149	rs11832031	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q14.3	LOC100507065	rs11832031-T	0.229528	2E-6	(women)	0.0245697	[0.014-0.035] unit increase	NR [17166351] (imputed)	N
1088	chr12	65952460	65952461	rs11175817	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs11175817-?	NR	2E-12	(right hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65952794	65952795	rs10878298	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10878298-?	NR	6E-12	(left hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65969767	65969768	rs10784474	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10784474-?	NR	9E-16	(right hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65969767	65969768	rs10784474	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs10784474-?	NR	1E-14	(left hippocampus)			NR [9227495] (imputed)	N
1088	chr12	65992635	65992636	rs11175834	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	12q14.3	MSRB3	rs11175834-T	0.15	5E-7		1.36	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1088	chr12	65992635	65992636	rs11175834	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	12q14.3	MSRB3	rs11175834-T	0.15	4E-8		1.37	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1088	chr12	65993757	65993758	rs143566192	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	Intergenic	rs143566192-G	0.999	4E-6	(AA)	0.242	unit increase	Illumina [NR] (imputed)	N
1088	chr12	65995686	65995687	rs11175835	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.3	LOC100507065	rs11175835-G	0.289085	3E-36		0.0257671	[0.022-0.03] unit increase	NR [13737936] (imputed)	N
1088	chr12	65995686	65995687	rs11175835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.3		rs11175835-?	NR	8E-30				NR [~ 8900000] (imputed)	N
1088	chr12	65995686	65995687	rs11175835	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs11175835-?	NR	2E-28		0.0250423	[0.021-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1088	chr12	66027555	66027556	rs11175842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q14.3		rs11175842-C	NR	3E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1088	chr12	66044283	66044284	rs12318900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q14.3		rs12318900-A	NR	6E-11		0.2939	[0.21-0.38] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
1088	chr12	66045957	66045958	rs4762116	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs4762116-?	NR	6E-11	(right hippocampus)			NR [9227495] (imputed)	N
1088	chr12	66048266	66048267	rs10878312	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs10878312-?	NR	3E-18		0.0213553	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1088	chr12	66053942	66053943	rs11175849	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs11175849-?	NR	9E-11	(left hippocampus)			NR [9227495] (imputed)	N
1089	chr12	66060811	66060812	rs11175854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs11175854-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1089	chr12	66117557	66117558	rs2358944	21150874	McDonough CW	2010-12-08	Kidney Int	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	12q14.3	HMGA2, MSRB3	rs2358944-G	0.77	4E-6		1.33	[1.18-1.49]	Affymetrix [832357]	N
1089	chr12	66128646	66128647	rs7972091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q14.3	NR	rs7972091-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1089	chr12	66133008	66133009	rs117638452	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	12q14.3	NR	rs117638452-G		4E-6		0.3911	[0.22-0.56] SD units decrease	NR [10700000] (imputed)	N
1089	chr12	66133996	66133997	rs11175898	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q14.3	LOC100507065, RPSAP52	rs11175898-?	NR	8E-22		0.03430207	[0.027-0.041] unit increase	Illumina [27896057] (imputed)	N
1089	chr12	66139168	66139169	rs11175904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs11175904-?	NR	4E-32				NR [~ 8900000] (imputed)	N
1089	chr12	66142478	66142479	rs6581654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12q14.3	RPSAP52	rs6581654-T	NR	3E-8		0.0173976	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1089	chr12	66156775	66156776	rs58811733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q14.3	NR	rs58811733-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1089	chr12	66160970	66160971	rs10784496	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	12q14.3	intergenic	rs10784496-G	NR	3E-7	(Controls)			Illumina [498205]	N
1089	chr12	66170480	66170481	rs2583921	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q14.3	NR	rs2583921-C	0.0922	9E-33		0.0954	[0.08-0.111] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1089	chr12	66170638	66170639	rs11175916	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			RPSAP52	rs11175916-A	0.02732	2E-9		82.8209	[55.71-109.93] unit increase	Affymetrix [8165723] (imputed)	N
1089	chr12	66170638	66170639	rs11175916	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals		RPSAP52	rs11175916-A	0.0317	2E-6		0.1293	[0.077-0.182] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1089	chr12	66170638	66170639	rs11175916	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals		RPSAP52	rs11175916-A	0.0307	4E-7		0.1008	[0.062-0.14] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1089	chr12	66174893	66174894	rs1531343	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q14.3	HMGA2	rs1531343-C	0.1272	5E-7		0.069	[0.042-0.096] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1089	chr12	66174893	66174894	rs1531343	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q14.3	HMGA2	rs1531343-C	0.1272	4E-6	(EA)	0.1121	[0.064-0.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1089	chr12	66174893	66174894	rs1531343	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q14.3	HMGA2	rs1531343-C		4E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [2426886] (imputed)	N
1089	chr12	66185089	66185090	rs17766408	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q14.3	NR	rs17766408-T	NR	4E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1090	chr12	66194242	66194243	rs2583949	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	12q14.3	NR	rs2583949-C	0.895253	5E-9		0.0123421	[0.0082-0.0165] unit increase	Affymetrix [16578495] (imputed)	N
1090	chr12	66194612	66194613	rs2583948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q14.3	NR	rs2583948-A	0.902954	3E-11		0.0349086	[0.025-0.045] unit increase	Affymetrix [16577313] (imputed)	N
1090	chr12	66198479	66198480	rs73113884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q14.3	NR	rs73113884-T	NR	2E-12		0.0592	[0.043-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1090	chr12	66211749	66211750	rs9669644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q14.3		rs9669644-C	0.102713	1E-16		0.0385904	[0.029-0.048] unit decrease	Illumina [13479924] (imputed)	N
1090	chr12	66211749	66211750	rs9669644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q14.3		rs9669644-C	0.102651	1E-29		0.038999	[0.032-0.046] unit decrease	Illumina [13479295] (imputed)	N
1090	chr12	66212317	66212318	rs2261181	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q14.3	RPSAP52	rs2261181-T	0.096470032992502	9E-17		0.0985	[0.075-0.122] unit increase	NR [5035015] (imputed)	N
1090	chr12	66212317	66212318	rs2261181	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	12q14.3	HMGA2	rs2261181-T	NR	5E-7	(additive model)	1.203	[1.13-1.28]	NR [9288881] (imputed)	N
1090	chr12	66212317	66212318	rs2261181	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	12q14.3	HMGA2	rs2261181-T	0.09	4E-8		1.16	[1.10-1.23]	Affymetrix, Illumina [2500000] (imputed)	N
1090	chr12	66212317	66212318	rs2261181	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12q14.3	HMGA2	rs2261181-T	NR	1E-7	(men)	1.14	[1.09-1.19]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1090	chr12	66212317	66212318	rs2261181	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12q14.3	HMGA2	rs2261181-T	0.100953558127083	1E-9		1.13	[1.08-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1090	chr12	66213520	66213521	rs2583939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q14.3	NR	rs2583939-C	0.867607	6E-10		0.00782804	[0.0054-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
1090	chr12	66213520	66213521	rs2583939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q14.3	NR	rs2583939-C	0.867607	4E-8		0.00802076	[0.0053-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
1090	chr12	66215213	66215214	rs2583938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q14.3		rs2583938-A	NR	3E-19		0.0692	[0.054-0.084] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1090	chr12	66215213	66215214	rs2583938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q14.3		rs2583938-A	0.343188906	3E-8		0.05714109	[0.037-0.077] unit increase	Illumina [13134967] (imputed)	N
1090	chr12	66215213	66215214	rs2583938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q14.3		rs2583938-A	NR	4E-13		0.0642	[0.047-0.081] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1090	chr12	66215213	66215214	rs2583938	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	12q14.3	NR	rs2583938-T	0.197	3E-12		0.123	[0.088-0.158] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
1090	chr12	66216002	66216003	rs139850265	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	12q14.3	NR	rs139850265-C	0.01354	2E-6		0.6276	[0.37-0.89] unit increase	Illumina [10677593] (imputed)	N
1090	chr12	66216161	66216162	rs2257883	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q14.3	NR	rs2257883-G	0.7363	4E-47		0.071	[0.061-0.081] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1090	chr12	66217871	66217872	rs2070808	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	12q14.3	RPSAP52	rs2070808-T	0.675	2E-12	(AA)	0.053	[0.037-0.069] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1090	chr12	66217871	66217872	rs2070808	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	12q14.3	RPSAP52	rs2070808-T	0.674	6E-7	(AA)	0.048	[0.028-0.068] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1090	chr12	66217871	66217872	rs2070808	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	12q14.3	RPSAP52	rs2070808-T	0.677	2E-7	(AA)	0.06	[0.036-0.084] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1090	chr12	66221059	66221060	rs2258238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q14.3		rs2258238-T	NR	4E-19		0.0288	[0.023-0.035] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1090	chr12	66221059	66221060	rs2258238	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	12q14.3	HMGA2	rs2258238-T	0.104567	3E-9		0.11251731	[0.075-0.15] unit increase	Affymetrix [7288503] (imputed)	N
1090	chr12	66221059	66221060	rs2258238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	12q14.3		rs2258238-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1090	chr12	66221059	66221060	rs2258238	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q14.3	HMGA2	rs2258238-T	0.1042	5E-21		1.1	[1.08-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1090	chr12	66224460	66224461	rs2272046	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	12q14.3	HMGA2	rs2272046-A	0.907	2E-21		1.43	[NR]	Affymetrix [NR] (imputed)	N
1090	chr12	66225189	66225189	rs11414025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q14.3		rs11414025-GT	0.341151714	1E-10		0.062087595	[0.043-0.081] unit increase	Illumina [13429769] (imputed)	N
1090	chr12	66225189	66225189	rs11414025	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q14.3		rs11414025-GT	0.339681848	2E-10		1.0572194	[1.039355749-1.075389946]	Illumina [8919992] (imputed)	N
1090	chr12	66227256	66227257	rs7979673	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	NR	rs7979673-?	NR	2E-8		0.03948431	[0.026-0.053] unit decrease	Illumina [34656550] (imputed)	N
1090	chr12	66227256	66227257	rs7979673	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	12q14.3	HMGA2	rs7979673-T	0.32	7E-10		0.058	[0.038-0.078] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1090	chr12	66232809	66232810	rs2583934	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q14.3	HMGA2	rs2583934-T	0.34	5E-16		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1090	chr12	66236734	66236735	rs2272047	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	12q14.3	NR	rs2272047-?	NR	7E-6		0.222	unit increase	Affymetrix, Illumina [up to 1078289] (imputed)	N
1090	chr12	66239873	66239874	rs10878339	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q14.3	HMGA2	rs10878339-A	0.9349	2E-23		0.0372	[0.03-0.044] unit increase	Affymetrix [18391927] (imputed)	N
1090	chr12	66250939	66250940	rs343092	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	12q14.3	HMGA2	rs343092-T	0.81	9E-9	(AA)	1.16	[1.1-1.22]	Affymetrix, Illumina [2579389] (imputed)	N
1090	chr12	66250939	66250940	rs343092	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	12q14.3	HMGA2	rs343092-T	0.81	3E-12		1.14	[1.10-1.19]	Affymetrix, Illumina [2579389] (imputed)	N
1090	chr12	66252293	66252294	rs189339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q14.3		rs189339-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1090	chr12	66253298	66253299	rs145282773	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q14.3	HMGA2	rs145282773-T	0.997	2E-6	(liability model)	1.04	[0.61-1.47] unit decrease	NR [19725427] (imputed)	N
1090	chr12	66256394	66256395	rs11175944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	AK128707	rs11175944-C	0.312	5E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1090	chr12	66306440	66306441	rs12298541	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	12q14.3	HMGA2, AC090673.2	rs12298541-?	NR	2E-8	(EA)	0.829	[0.54-1.12] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1090	chr12	66306440	66306441	rs12298541	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q14.3	NR	rs12298541-A	0.3831	9E-7		0.0135	[0.0081-0.0189] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1090	chr12	66306440	66306441	rs12298541	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	12q14.3	NR	rs12298541-A	0.3796	5E-6		0.0169	[0.0097-0.0241] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1090	chr12	66318216	66318217	rs73121716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs73121716-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1090	chr12	66319557	66319557	rs35246909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q14.3	HMGA2	rs35246909-CG	0.226094	4E-10		0.016778553	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1090	chr12	66320872	66320873	rs10878346	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 1)	2,595 Tanzanian ancestry individuals	NA	12q14.3		rs10878346-?	NR	6E-12				Illumina [NR] (imputed)	N
1090	chr12	66321343	66321344	rs11175967	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 28)	3,566 European ancestry individuals	4,680 European ancestry individuals	12q14.3		rs11175967-G	0.221938051	2E-15				Illumina [7417619] (imputed)	N
1090	chr12	66321611	66321611	rs143707177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q14.3		rs143707177-CTG	NR	3E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1090	chr12	66321611	66321611	rs143707177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q14.3	NR	rs143707177-CTG	NR	4E-9		0.0177	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1090	chr12	66321632	66321633	rs11175968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.3	NR	rs11175968-G	0.224915	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1090	chr12	66321632	66321633	rs11175968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q14.3	NR	rs11175968-G	0.228118	7E-13		0.016528	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1091	chr12	66324878	66324879	rs11175971	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs11175971-T	0.02439	2E-11	(PLD3)	0.02219	NR unit increase	Illumina [1671387] (imputed)	N
1091	chr12	66325688	66325689	rs343086	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	12q14.3	HMGA2	rs343086-?	NR	3E-9	(EA)	0.8945	[0.6-1.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66326942	66326943	rs1480474	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q14.3	HMGA2	rs1480474-G	0.415993965607979	2E-8		0.0411	[0.027-0.055] unit increase	NR [5035015] (imputed)	N
1091	chr12	66327631	66327632	rs10878349	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q14.3	NR	rs10878349-A	0.4843	2E-25	(total)	820.2131	[666.09-974.33] unit increase	Affymetrix, Illumina [NR]	N
1091	chr12	66327631	66327632	rs10878349	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	12q14.3	HMGA2	rs10878349-A	0.48881501	9E-8		0.257208	[0.16-0.35] unit decrease	Affymetrix [9463307] (imputed)	N
1091	chr12	66328026	66328027	rs12810758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs12810758-T	NR	1E-16		0.0304905	[0.023-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1091	chr12	66331364	66331365	rs7966340	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (forehead protrusion 1)	6,169 Latin American individuals	NA	12q14.3		rs7966340-?	NR	5E-9				Illumina [8703729] (imputed)	N
1091	chr12	66331364	66331365	rs7966340	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 2)	6,169 Latin American individuals	NA	12q14.3		rs7966340-?	NR	8E-10				Illumina [8703729] (imputed)	N
1091	chr12	66331364	66331365	rs7966340	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	12q14.3		rs7966340-?	NR	2E-8				Illumina [8703729] (imputed)	N
1091	chr12	66338201	66338202	rs17101923	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		12q14.3	HMGA2	rs17101923-G	NR	6E-11		0.212	[0.15-0.28] unit decrease	Illumina [2446724] (imputed)	N
1091	chr12	66338201	66338202	rs17101923	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		12q14.3	HMGA2	rs17101923-G	NR	1E-10		0.182	[0.13-0.24] unit increase	Illumina [2446724] (imputed)	N
1091	chr12	66343399	66343400	rs1038196	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs1038196-C	NR	1E-9		0.959		Affymetrix [9869154] (imputed)	N
1091	chr12	66343809	66343810	rs10784502	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q14.3	NR	rs10784502-T	0.515162	7E-12		0.0676446	[0.049-0.087] unit decrease	Affymetrix [21375087] (imputed)	N
1091	chr12	66343809	66343810	rs10784502	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q14.3	HMGA2	rs10784502-C		7E-10		0.235	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1091	chr12	66343809	66343810	rs10784502	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q14.3	HMGA2	rs10784502-C		1E-13		0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1091	chr12	66343809	66343810	rs10784502	22504417	Stein JL	2012-04-15	Nat Genet	Identification of common variants associated with human hippocampal and intracranial volumes.	Brain structure	2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls	599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls	12q14.3	HMGA2	rs10784502-C	0.49	1E-12	(Intracranial volume)	9006.71	[6525.78-11487.64] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66343893	66343894	rs76456255	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12q14.3	HMGA2	rs76456255-A	0.098	2E-7	(Acetic acid derivatives and related substances [M01AB])	1.75		Illumina [16500000] (imputed)	N
1091	chr12	66346713	66346714	rs12371967	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q14.3	HMGA2	rs12371967-T	0.831	9E-11		0.057	[0.04-0.074] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66347367	66347368	rs7959830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q14.3		rs7959830-T	NR	1E-34		0.0227	[0.019-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1091	chr12	66347367	66347368	rs7959830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs7959830-T	NR	3E-18		0.0271842	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1091	chr12	66347367	66347368	rs7959830	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	12q14.3		rs7959830-T	0.42	9E-47		0.018	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1091	chr12	66347367	66347368	rs7959830	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	12q14.3		rs7959830-T	0.42	3E-16		0.02	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1091	chr12	66348133	66348134	rs1871674	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q14.3	HMGA2	rs1871674-T	0.802319	2E-23		0.0231749	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
1091	chr12	66348133	66348134	rs1871674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.3		rs1871674-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1091	chr12	66348133	66348134	rs1871674	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q14.3		rs1871674-?	NR	9E-25		0.0258041	[0.021-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1091	chr12	66349811	66349812	rs17179670	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q14.3	HMGA2	rs17179670-?	NR	1E-33		0.08037376	[0.067-0.093] unit decrease	Illumina [27896057] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q14.3		rs1351394-C	NR	5E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q14.3		rs1351394-C	NR	3E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12q14.3	HMGA2	rs1351394-T	0.4943	3E-9		0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q14.3	HMGA2	rs1351394-T	NR	3E-15		0.0231125	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q14.3	HMGA2	rs1351394-T	0.488178	5E-11		0.013086	[0.0092-0.017] unit decrease	Affymetrix [NR] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q14.3	NR	rs1351394-T	0.490619	4E-11		0.00790807	[0.0056-0.0102] unit increase	Affymetrix [16582621] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q14.3	NR	rs1351394-T	0.490619	6E-8		0.00690505	[0.0045-0.0093] unit increase	Affymetrix [16582614] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	NR	rs1351394-?	NR	1E-11		0.04059133	[0.029-0.052] unit decrease	Illumina [34656550] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	12q14.3	HMGA2	rs1351394-T	0.48	2E-33		0.043	[0.036-0.05] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs1351394-T	0.4952	8E-7	(EA, women)	0.0222	[0.013-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs1351394-T	0.4952	5E-13	(EA)	0.0253	[0.018-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs1351394-T	0.4952	2E-8	(EA,men)	0.0281	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs1351394-T	0.4952	6E-11	(EA)	0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs1351394-T	0.4952	4E-8	(EA, men)	0.0267	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	12q14.3	HMGA2	rs1351394-T	0.498	7E-7		0.044	[0.026-0.062] unit increase	Affymetrix, Illumina [2201971] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q14.3	HMGA2	rs1351394-T	0.49	7E-32		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1091	chr12	66351825	66351826	rs1351394	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q14.3	HMGA2	rs1351394-T	0.49	2E-65		0.06	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1091	chr12	66353890	66353891	rs7138102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q14.3	HMGA2	rs7138102-A	NR	2E-8		0.0162807	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1091	chr12	66353890	66353891	rs7138102	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	12q14.3	Intergenic	rs7138102-A	0.41	2E-7	(Lean)	16.0	[10-22] kcals decrease	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66353890	66353891	rs7138102	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	12q14.3	Intergenic	rs7138102-A	0.4	4E-8	(Women, Lean)	18.0	[12-25] kcals decrease	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	12q14.3		rs1042725-C	0.505629	7E-9		0.0530992	[0.035-0.071] decrease	Affymetrix [11014269] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	12q14.3	HMGA2	rs1042725-?		7E-11	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q14.3	NR	rs1042725-T	0.494436	3E-11		0.012765	[0.009-0.0165] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q14.3	NR	rs1042725-C	0.508157	8E-25		0.0083042	[0.0067-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q14.3	NR	rs1042725-C	0.508157	4E-19		0.00812764	[0.0063-0.01] unit increase	Affymetrix [16582965] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q14.3	NR	rs1042725-T	0.493581	1E-14		0.0526547	[0.039-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	12q14.3	NR	rs1042725-T	0.4901	9E-22		0.10481363	[0.083-0.126] z score decrease	NR [1977400] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	12q14.3	NR	rs1042725-T	0.49	2E-33		0.044908717	[0.038-0.052] unit decrease	NR [1977400] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	12q14.3	NR	rs1042725-T	0.504	2E-29		0.06538093	[0.054-0.077] unit decrease	NR [1977400] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	NR	rs1042725-?	NR	3E-10		0.03672127	[0.025-0.048] unit decrease	Illumina [34656550] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q14.3		rs1042725-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q14.3	HMGA2	rs1042725-T	0.4902	2E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q14.3	HMGA2	rs1042725-T	0.73	2E-7		0.024	[0.01-0.038] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	12q14.3	HMGA2	rs1042725-T	0.50	1E-19		0.047	[0.037-0.057] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	22504419	Taal HR	2012-04-15	Nat Genet	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	12q14.3	HMGA2	rs1042725-T	0.49	3E-10		0.065	[0.045-0.085] SD decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	12q14.3	HMGA2	rs1042725-C	0.49	3E-18		0.05	[0.03-0.08] s.d. increase (males)	Affymetrix [402951]	N
1091	chr12	66358346	66358347	rs1042725	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	12q14.3	HMGA2	rs1042725-T	0.49	3E-20		0.48	[0.58-1.09] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1091	chr12	66358346	66358347	rs1042725	17767157	Weedon MN	2007-09-02	Nat Genet	A common variant of HMGA2 is associated with adult and childhood height in the general population.	Height	4,921 European ancestry individuals	19,064 European ancestry adult individuals, 6,827 European ancestry children	12q14.3	HMGA2	rs1042725-C	0.51	6E-16		0.4	[NR] cm increase	Affymetrix [364301]	N
1091	chr12	66359751	66359752	rs8756	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q14.3		rs8756-C	0.45	7E-21		9.37	z score increase	Affymetrix [9061022] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q14.3		rs8756-C	0.45	6E-13		7.19	z score increase	Affymetrix [9061022] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q14.3		rs8756-C	0.45	1E-14		7.74	z score increase	Affymetrix [9061022] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q14.3		rs8756-A	NR	9E-13		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q14.3		rs8756-A	NR	2E-141		0.0364	[0.034-0.039] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q14.3	NR	rs8756-C	0.4881	5E-11				NR [9056863] (imputed)	N
1091	chr12	66359751	66359752	rs8756	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	12q14.3		rs8756-?	NR	4E-6		1.12601	[1.08-1.18]	NR [674885]	N
1091	chr12	66359751	66359752	rs8756	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12q14.3	NR	rs8756-?		5E-10		0.0134501	[0.0092-0.0177] unit decrease	Affymetrix [19400418] (imputed)	N
1091	chr12	66359751	66359752	rs8756	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q14.3	NR	rs8756-C	0.485175	2E-13		0.00845938	[0.006-0.0109] unit increase	Affymetrix [16585854] (imputed)	N
1091	chr12	66359751	66359752	rs8756	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q14.3	NR	rs8756-C	0.485175	9E-11		0.00876032	[0.006-0.0115] unit increase	Affymetrix [16585866] (imputed)	N
1091	chr12	66359751	66359752	rs8756	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs8756-?	NR	7E-14	(total brain volume)			NR [9227495] (imputed)	N
1091	chr12	66359751	66359752	rs8756	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	NR	rs8756-?	NR	3E-12		0.04180514	[0.03-0.054] unit decrease	Illumina [34656550] (imputed)	N
1091	chr12	66359751	66359752	rs8756	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q14.3	HMGA2	rs8756-C	0.486261	1E-19		0.027582	[0.022-0.034] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1091	chr12	66359751	66359752	rs8756	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	12q14.3	HMGA2	rs8756-?	NR	3E-12				Affymetrix [up to 7325140] (imputed)	N
1091	chr12	66359751	66359752	rs8756	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q14.3	HMGA2	rs8756-A	0.5267	3E-18		0.059	[0.046-0.072] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66359751	66359752	rs8756	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q14.3	HMGA2	rs8756-A	0.508	5E-90		0.059	[0.053-0.065] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1091	chr12	66359751	66359752	rs8756	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	12q14.3	HMGA2	rs8756-A	0.51	4E-7		0.07	[0.03-0.11] SD decrease	Illumina [559712] (imputed)	N
1091	chr12	66359751	66359752	rs8756	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	12q14.3	HMGA2	rs8756-?	0.17	5E-14		0.08	[0.06-0.10] s.d. decrease	Illumina [229216]	N
1091	chr12	66359751	66359752	rs8756	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q14.3	HMGA2	rs8756-C	0.52	2E-16		6.6	[5.03-8.17] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1091	chr12	66360163	66360164	rs7970350	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs7970350-T	NR	1E-19		0.0278665	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q14.3		rs7970350-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	7E-6		0.0172	[0.0098-0.0246] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	1E-6	(men)	0.0279	[0.017-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	7E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	8E-7		0.0172	[0.01-0.024] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q14.3	HMGA2	rs7970350-T	0.497	3E-7	(men)	0.0256	[0.016-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs7970350-T	0.494	5E-7	(EA, men)	0.024	[0.015-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q14.3	HMGA2	rs7970350-T	0.494	4E-8	(EA)	0.0188	[0.012-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1091	chr12	66360163	66360164	rs7970350	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	12q14.3	HMGA2	rs7970350-T	0.49	3E-8		0.047	[0.029-0.065] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1091	chr12	66363069	66363070	rs7968902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q14.3		rs7968902-G	NR	3E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1091	chr12	66363069	66363070	rs7968902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q14.3	HMGA2	rs7968902-G	0.569504	3E-9		0.013530345	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr12	66363069	66363070	rs7968902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	12q14.3		rs7968902-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1091	chr12	66364508	66364509	rs12424086	21931568	Geller F	2011-09-08	PLoS Genet	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 individuals	12q14.3	HMGA2	rs12424086-C	0.18	2E-12		0.111	[0.08-0.14] unit decrease	Illumina [521741]	N
1091	chr12	66364508	66364509	rs12424086	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	12q14.3	HMGA2	rs12424086-C	0.23	8E-6				Illumina [300766]	N
1091	chr12	66364508	66364509	rs12424086	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	12q14.3	HMGA2	rs12424086-C	0.23	4E-6				Illumina [300766]	N
1091	chr12	66367069	66367070	rs12826248	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q14.3	NR	rs12826248-A	0.2047	2E-9	(total)	612.7482	[413.15-812.35] unit decrease	Affymetrix, Illumina [NR]	N
1091	chr12	66367725	66367726	rs61921611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs61921611-C	NR	2E-14		0.0253727	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1091	chr12	66367725	66367726	rs61921611	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q14.3	NR	rs61921611-C	0.308	8E-12		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66371879	66371880	rs7968682	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	NR	rs7968682-?	NR	1E-11		0.04052013	[0.029-0.052] unit decrease	Illumina [34656550] (imputed)	N
1091	chr12	66371879	66371880	rs7968682	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	12q14.3	NR	rs7968682-T	0.47	7E-37		0.041	[0.035-0.047] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1091	chr12	66371879	66371880	rs7968682	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q14.3	HMGA2	rs7968682-G	0.486291	4E-60		0.041831	[0.037-0.047] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1091	chr12	66371879	66371880	rs7968682	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	12q14.3	HMGA2	rs7968682-T	0.58	4E-10		0.043	[0.025-0.061] unit decrease	Affymetrix [855034]	N
1091	chr12	66373500	66373501	rs113744258	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q14.3	AKAP7	rs113744258-T	0.4792	7E-11		0.2173	[0.15-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1091	chr12	66373500	66373501	rs113744258	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q14.3	AKAP7	rs113744258-T	0.4796	3E-11		0.1662	[0.12-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
1091	chr12	66373601	66373602	rs4338565	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q14.3	intergenic	rs4338565-T	0.5176	5E-151		0.0497	[0.046-0.053] unit decrease	Affymetrix [18391927] (imputed)	N
1091	chr12	66374246	66374247	rs7312464	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12q14.3	chr12mb66	rs7312464-G	0.51912487	5E-10		0.2104	[0.14-0.28] unit increase	Affymetrix [~ 9800000] (imputed)	N
1091	chr12	66374586	66374587	rs9669278	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q14.3	NR	rs9669278-?	NR	3E-27	(male)	0.37883	[0.31-0.45] unit decrease	Affymetrix [7794483] (imputed)	N
1091	chr12	66374586	66374587	rs9669278	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q14.3	NR	rs9669278-?	NR	1E-44		0.31068	[0.27-0.35] unit decrease	Affymetrix [7794483] (imputed)	N
1091	chr12	66374586	66374587	rs9669278	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q14.3	NR	rs9669278-?	NR	1E-20	(female)	0.22589	[0.18-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1091	chr12	66376090	66376091	rs7306710	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q14.3	HMGA2	rs7306710-T	0.47969	2E-12		0.00996644	[0.0072-0.0127] unit increase	Affymetrix [12370749]	N
1091	chr12	66376090	66376091	rs7306710	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	12q14.3	HMGA2	rs7306710-T	0.479265	2E-8		0.9757613	NR	Affymetrix [~ 9600000] (imputed)	N
1091	chr12	66376090	66376091	rs7306710	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	12q14.3	HMGA2	rs7306710-?	NR	8E-16		1.1329	[0.86-1.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66376090	66376091	rs7306710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs7306710-?	NR	1E-287				NR [~ 8900000] (imputed)	N
1091	chr12	66376309	66376310	rs9706053	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	12q14.3	NR	rs9706053-C		7E-7		0.4582	[0.28-0.64] SD units decrease	NR [10700000] (imputed)	N
1091	chr12	66379290	66379291	rs2884593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q14.3	Intergenic	rs2884593-A	0.3099	7E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr12	66379503	66379504	rs2358954	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	12q14.3	HMGA2	rs2358954-T	0.68	3E-6		0.039	[0.023-0.055] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1091	chr12	66379503	66379504	rs2358954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q14.3	Intergenic	rs2358954-T	0.6729	2E-8	(MTAG)	0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1091	chr12	66379503	66379504	rs2358954	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		12q14.3	HMGA2	rs2358954-G	NR	3E-6		1.0825291		Affymetrix, Illumina [1918233] (imputed)	N
1091	chr12	66383319	66383320	rs1585897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs1585897-C	NR	2E-14		0.023662	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
1091	chr12	66383737	66383738	rs34029815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q14.3	HMGA2	rs34029815-G	NR	3E-10		0.0243758	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1091	chr12	66383842	66383843	rs7966895	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs7966895-?	NR	2E-12	(total brain volume)			NR [9227495] (imputed)	N
1091	chr12	66387141	66387141	rs35746342	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q14.3	NR	rs35746342-?	NR	7E-12	(total brain volume)			NR [9227495] (imputed)	N
1091	chr12	66387620	66387621	rs10748027	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	12q14.3		rs10748027-A	NR	2E-6		0.0276	[0.017-0.039] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1091	chr12	66387620	66387621	rs10748027	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	12q14.3		rs10748027-A	NR	2E-7		0.016	[0.01-0.022] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1091	chr12	66389605	66389606	rs55981861	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q14.3	HMGA2	rs55981861-C	0.7541	1E-9		0.0491	[0.033-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66389967	66389968	rs10400419	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	12q14.3	HMGA2	rs10400419-?	NR	2E-11		0.9381	[0.66-1.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1091	chr12	66389967	66389968	rs10400419	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	12q14.3	HMGA2	rs10400419-T	0.3837	2E-7		0.0562	[0.035-0.078] unit increase	Illumina [2500000] (imputed)	N
1091	chr12	66394663	66394664	rs4026608	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q14.3	MIR6074	rs4026608-T	0.62	7E-9		0.38	[0.24-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1091	chr12	66394663	66394664	rs4026608	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q14.3	RP11-366L20.4	rs4026608-T	0.6187	3E-7		0.0338	[0.021-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66394663	66394664	rs4026608	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	12q14.3	HMGA2	rs4026608-C	0.38	2E-9		0.03	[0.02-0.04] cm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1091	chr12	66395241	66395242	rs542561956	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q14.3	RP11-366L20.4	rs542561956-T	0.9971	5E-6		0.4181	[0.24-0.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66395241	66395242	rs542561956	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q14.3	RP11-366L20.4	rs542561956-T	0.9971	5E-6		0.4181	[0.24-0.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1091	chr12	66397165	66397166	rs141753469	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	12q14.3	HMGA2, LLPH	rs141753469-?	NR	6E-9		1.111	[1.072-1.151]	Illumina [13537761] (imputed)	N
1091	chr12	66404623	66404624	rs10878359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q14.3	RP11-366L20.4	rs10878359-T	NR	5E-9		0.0172007	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1091	chr12	66404623	66404624	rs10878359	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q14.3	MIR6074	rs10878359-C	0.6347	1E-8		0.392	[0.26-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	12q14.3		rs11176001-A	0.132	2E-16		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12q14.3	HMGA2	rs11176001-A	0.1293	2E-46		0.92	[0.91-0.93]	Affymetrix, Illumina [8494288] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q14.3	MIR6074	rs11176001-A	0.1309	8E-11		0.0243	[0.017-0.032] unit decrease	Affymetrix [19819130] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q14.3	MIR6074	rs11176001-A	0.1309	3E-12		0.0244	[0.018-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q14.3	MIR6074	rs11176001-A	0.1309	5E-17		0.0291	[0.022-0.036] unit decrease	Affymetrix [19819130] (imputed)	N
1091	chr12	66409366	66409367	rs11176001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q14.3		rs11176001-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1091	chr12	66412129	66412130	rs1480470	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q14.3	HMGA2	rs1480470-G	0.631485	1E-19		0.02433	[0.019-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1091	chr12	66412129	66412130	rs1480470	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q14.3	HMGA2	rs1480470-A	0.371	3E-8		0.347	[0.22-0.47] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1091	chr12	66422373	66422374	rs10878366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q14.3	RP11-366L20.4	rs10878366-A	NR	5E-10		0.0190977	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1091	chr12	66422373	66422374	rs10878366	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q14.3	NR	rs10878366-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1091	chr12	66422752	66422753	rs10784510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q14.3	NR	rs10784510-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1091	chr12	66424503	66424504	rs7137538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q14.3	RP11-366L20.4	rs7137538-C	NR	1E-8		0.024253	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
1091	chr12	66424503	66424504	rs7137538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q14.3	RP11-366L20.4	rs7137538-C	NR	6E-9		0.0246792	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
1091	chr12	66425334	66425335	rs11176010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q14.3		rs11176010-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1091	chr12	66430451	66430452	rs4130827	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q14.3	NR	rs4130827-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1091	chr12	66430451	66430452	rs4130827	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q14.3	NR	rs4130827-T	0.7062	6E-21		0.0191	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1091	chr12	66430451	66430452	rs4130827	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q14.3	NR	rs4130827-T	0.7063	8E-13		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1091	chr12	66432020	66432021	rs6581661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q14.3	RP11-118B13.1	rs6581661-T	NR	3E-10		0.0200574	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1091	chr12	66432020	66432021	rs6581661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q14.3	RP11-118B13.1	rs6581661-T	NR	3E-13		0.0232723	[0.017-0.03] unit increase	Affymetrix [321169] (imputed)	N
1091	chr12	66432020	66432021	rs6581661	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q14.3	NR	rs6581661-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1091	chr12	66432656	66432657	rs6581662	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q14.3	NR	rs6581662-T	0.31	2E-21		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
1091	chr12	66432656	66432657	rs6581662	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q14.3	NR	rs6581662-T	0.31	5E-8				Affymetrix [2446094] (imputed)	N
1091	chr12	66441683	66441684	rs11176015	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q14.3	NA	rs11176015-T	0.293	7E-14		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1091	chr12	66444226	66444227	rs11176017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q14.3	RP11-118B13.1	rs11176017-T	NR	2E-20		0.029155	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
1091	chr12	66447375	66447376	rs117568227	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	12q14.3	LLPH	rs117568227-A	0.01	6E-7	(Subset)	1.19	[0.72-1.66] unit decrease	Illumina [up to 38043574] (imputed)	N
1091	chr12	66449971	66449972	rs11836463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q14.3	RNA5SP362	rs11836463-A	NR	2E-8		0.0179845	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1091	chr12	66452135	66452136	rs11176019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q14.3	RNA5SP362	rs11176019-T	NR	3E-20		0.029036	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
1092	chr12	66456015	66456016	rs11176024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q14.3	RNA5SP362	rs11176024-T	NR	3E-14		0.0236045	[0.018-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1092	chr12	66482379	66482380	rs2870784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q14.3		rs2870784-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1092	chr12	66482797	66482798	rs73123449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.3		rs73123449-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1092	chr12	66513627	66513628	rs73123487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q14.3	LLPH	rs73123487-T	NR	5E-9		0.05078	[0.034-0.068] unit decrease	Affymetrix [321788] (imputed)	N
1092	chr12	66513627	66513628	rs73123487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q14.3	LLPH	rs73123487-T	NR	1E-8		0.0476322	[0.031-0.064] unit decrease	Affymetrix [321016] (imputed)	N
1092	chr12	66516947	66516948	rs113866309	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	12q14.3	LLPH, TMBIM4	rs113866309-C	NR	8E-9		2.2172	[1.15-3.28] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
1092	chr12	66525686	66525687	rs76009562	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q14.3	RP11-745O10.2	rs76009562-?	NR	1E-8		0.073	[0.048-0.098] unit increase	Illumina [34656550] (imputed)	N
1092	chr12	66537282	66537283	rs11176057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q14.3	TMBIM4	rs11176057-A	NR	9E-11		0.0240835	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1093	chr12	66633163	66633164	rs17826057	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	12q14.3	IRAK3	rs17826057-A	0.0503	3E-7		2.65	[NR] unit increase	Illumina [1216189] (imputed)	N
1093	chr12	66641812	66641813	rs11465988	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	12q14.3	IRAK3	rs11465988-?		4E-8		51.5905	[33.52-69.66] unit decrease	NR [NR] (imputed)	N
1093	chr12	66654964	66654965	rs111858825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs111858825-A	0.05226	5E-9	(HSPA8)	0.6687	NR unit increase	Illumina [1671387] (imputed)	N
1093	chr12	66654964	66654965	rs111858825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs111858825-A	0.05226	5E-10	(KATNAL2)	0.02572	NR unit increase	Illumina [1671387] (imputed)	N
1093	chr12	66654964	66654965	rs111858825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs111858825-A	0.05226	2E-8	(ALDOA)	0.1698	NR unit increase	Illumina [1671387] (imputed)	N
1093	chr12	66671778	66671779	rs7315361	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	12q14.3	IRAK3, HELB	rs7315361-?	NR	2E-10		0.036	[0.025-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1093	chr12	66681518	66681519	rs10784521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	12q14.3		rs10784521-A	0.483963	5E-10		0.0283206	[0.019-0.037] unit increase	Illumina [13469940] (imputed)	N
1093	chr12	66682403	66682404	rs7306114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	12q14.3	NR	rs7306114-T	0.561605	2E-13		0.037441	[0.027-0.047] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
1093	chr12	66682403	66682404	rs7306114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q14.3	NR	rs7306114-C	0.516373	2E-26				Affymetrix, Illumina [19905671] (imputed)	N
1093	chr12	66698143	66698144	rs2118138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12q14.3	HELB	rs2118138-G	0.528202	4E-12		0.015446305	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1093	chr12	66698460	66698461	rs2118140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q14.3	HELB	rs2118140-G	0.527756	7E-11		0.014538383	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1093	chr12	66698460	66698461	rs2118140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q14.3	NR	rs2118140-G	0.528383	4E-19		0.018347	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1093	chr12	66698953	66698954	rs1971302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q14.3		rs1971302-G	NR	9E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1093	chr12	66704224	66704225	rs75770066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q14.3		rs75770066-?	NR	2E-65				NR [~ 8900000] (imputed)	N
1093	chr12	66704224	66704225	rs75770066	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 2,545 European ancestry women	up to 46,638 European ancestry women	12q14.3	HELB	rs75770066-G	0.034	1E-31		0.8542	[0.71-1] year increase	Illumina [Exome array]	N
1094	chr12	66721100	66721101	rs1691799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	12q14.3	HELB	rs1691799-G	0.4595	1E-14		0.02722433	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1094	chr12	66769503	66769504	rs78598096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q14.3		rs78598096-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1094	chr12	66779536	66779537	rs61925898	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	12q14.3	GRIP1	rs61925898-G	0.4433	1E-17		0.03039219	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1094	chr12	66779536	66779537	rs61925898	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	12q14.3	GRIP1	rs61925898-G	0.4433	3E-17		0.03020766	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1094	chr12	66814465	66814466	rs7397861	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	12q14.3	HELB	rs7397861-G	0.64	7E-6		0.1	[0.061-0.139] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1094	chr12	66816138	66816139	rs10748045	24964207	Mullins N	2014-06-25	Am J Med Genet B Neuropsychiatr Genet	Genetic relationships between suicide attempts, suicidal ideation and major psychiatric disorders: a genome-wide association and polygenic scoring study.	Suicidal ideation in depression or bipolar disorder	237 European ancestry cases, 510 European ancestry controls	NA	12q14.3	NR	rs10748045-G	0.354	1E-6		1.78	[1.41-2.25]	Illumina [494742]	N
1094	chr12	66842446	66842447	rs6581697	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	12q14.3	NR	rs6581697-A	0.3501	3E-8		0.6454	[0.42-0.87] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1095	chr12	66887205	66887206	rs2047077	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	12q14.3	NR	rs2047077-G	0.05	2E-7		1.66	[1.37-2.01]	Illumina [12683648] (imputed)	N
1095	chr12	66904522	66904523	rs7956611	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	12q14.3	NR	rs7956611-?		2E-6				Illumina [1211988] (imputed)	N
1096	chr12	66995053	66995054	rs7968118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q14.3		rs7968118-T	0.49	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
1096	chr12	66995155	66995156	rs7953305	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q14.3	NR	rs7953305-C	0.4279	2E-8				NR [9056863] (imputed)	N
1096	chr12	67006087	67006088	rs4477518	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q14.3	NR	rs4477518-A	0.3782	1E-11				NR [9056863] (imputed)	N
1096	chr12	67032860	67032861	rs4537836	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q14.3		rs4537836-T	0.37	8E-12		6.83	z score increase	Affymetrix [9061022] (imputed)	N
1096	chr12	67035141	67035142	rs10878479	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q14.3		rs10878479-A	0.37	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
1096	chr12	67042316	67042317	rs6581710	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	12q14.3	NR	rs6581710-A	NR	5E-6	(EA)	0.002161	NR unit decrease	Illumina [3262988] (imputed)	N
1096	chr12	67086809	67086810	rs74910874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	GRIP1	rs74910874-T	0.999	4E-9	(AA)	0.393	unit increase	Illumina [NR] (imputed)	N
1097	chr12	67147602	67147603	rs10506495	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs10506495-C	0.1899	2E-8	(PIPOX)	0.09177	NR unit increase	Illumina [1671387] (imputed)	N
1097	chr12	67180178	67180179	rs748529	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q14.3	NR	rs748529-T	0.01568	4E-10	(SERPINF1)	0.02124	NR unit increase	Illumina [1671387] (imputed)	N
1097	chr12	67181788	67181789	rs147616082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q14.3	GRIP1	rs147616082-A	1.0	1E-6	(AA)	0.764	unit increase	Illumina [NR] (imputed)	N
1100	chr12	67529473	67529474	rs74962680	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12q14.3	intergenic	rs74962680-A	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1100	chr12	67593840	67593841	rs10878577	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q14.3	GGTA2P	rs10878577-A	NR	2E-7		1.063	[1.04-1.09]	Illumina [6627481] (imputed)	N
1100	chr12	67593840	67593841	rs10878577	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q14.3	GGTA2P	rs10878577-A	NR	2E-6	(EA)	1.0623	[1.04-1.09]	Illumina [6627481] (imputed)	N
1100	chr12	67593840	67593841	rs10878577	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q14.3	intergenic	rs10878577-A	NR	9E-7		1.059	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1100	chr12	67593840	67593841	rs10878577	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q14.3	NR	rs10878577-A	NR	6E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1100	chr12	67594577	67594578	rs17184007	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	12q14.3	GGTA2P	rs17184007-?	NR	7E-9		1.35	[0.9-1.8] unit increase	Affymetrix [2135235] (imputed)	N
1100	chr12	67628830	67628831	rs1082714	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	12q14.3	CAND1	rs1082714-?	NR	5E-6				Illumina [516645]	N
1101	chr12	67643413	67643414	rs4913534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q14.3		rs4913534-A	NR	9E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1101	chr12	67645246	67645247	rs775633	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q14.3	CAND1	rs775633-T	0.345523	3E-9		0.0125091	[0.0084-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1101	chr12	67651971	67651972	rs1252425	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q14.3	CAND1	rs1252425-C	0.344146	7E-10		0.0124305	[0.0085-0.0164] unit decrease	Affymetrix [NR] (imputed)	N
1101	chr12	67653616	67653617	rs2438109	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q14.3	NR	rs2438109-C	0.656713	2E-8		0.00653533	[0.004-0.0091] unit increase	Affymetrix [16585854] (imputed)	N
1101	chr12	67653616	67653617	rs2438109	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q14.3	NR	rs2438109-C	0.656713	8E-8		0.00762555	[0.0047-0.0106] unit increase	Affymetrix [16585866] (imputed)	N
1101	chr12	67659685	67659686	rs698123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q14.3		rs698123-T	NR	9E-10		0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1101	chr12	67661518	67661519	rs11176664	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q14.3	NR	rs11176664-A	0.49515299999999995	3E-9		0.00458345	[0.0029-0.0062] unit increase	Affymetrix [16582909] (imputed)	N
1101	chr12	67661518	67661519	rs11176664	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q14.3	NR	rs11176664-A	0.49515299999999995	6E-7		0.00465913	[0.0028-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
1101	chr12	67667826	67667827	rs118065693	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	12q14.3	NR	rs118065693-?	NR	2E-6		7.8681	[2.36-13.37] unit decrease	Illumina [at least 560000] (imputed)	N
1101	chr12	67672869	67672870	rs17781645	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q14.3	NR	rs17781645-?	NR	6E-23				Affymetrix [NR]	N
1101	chr12	67687791	67687792	rs1658780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q14.3		rs1658780-C	NR	3E-11		0.0116	[0.0083-0.0149] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1101	chr12	67697855	67697856	rs710629	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q15		rs710629-A	0.645	2E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1101	chr12	67716702	67716703	rs1066391	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q15		rs1066391-A	0.3521	3E-9	(conditional-joint)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1102	chr12	67782396	67782397	rs4143175	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	12q15	CAND1	rs4143175-T	0.2409	5E-10		0.2187	[0.15-0.29] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1102	chr12	67819375	67819376	rs1882033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	DYRK2	rs1882033-?	NR	2E-6	(SM 22:1)	0.16561966	[0.097-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
1102	chr12	67821543	67821544	rs34094228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q15	NTAN1P3	rs34094228-C	NR	2E-8		0.0348716	[0.023-0.047] unit decrease	Affymetrix [321016] (imputed)	N
1102	chr12	67833006	67833007	rs10784627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q15	RP11-473M14.3	rs10784627-C	NR	2E-9		0.028313	[0.019-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1102	chr12	67847459	67847460	rs1161098	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	12q15	CAND1, LOC100507175	rs1161098-?	NR	5E-7	(Hispanic/Latino)			NR [at least 880000]	N
1102	chr12	67852783	67852784	rs11176749	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	12q15	CAND1	rs11176749-T	0.11	7E-7	(15-18 months)	0.12	[0.073-0.167] unit decrease	Illumina [2449665] (imputed)	N
1102	chr12	67854345	67854346	rs2870933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs2870933-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1102	chr12	67894618	67894619	rs7960954	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	12q15	NR	rs7960954-?	NR	8E-6				Illumina [1735619]	N
1103	chr12	67928223	67928224	rs4913250	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (C9orf72 mutation interaction)	4,243 European ancestry cases	NA	12q15	DYRK2, CAND1	rs4913250-?	0.34	3E-6		1.6393442	[1.33-2.13]	Illumina [254145]	N
1103	chr12	68005673	68005674	rs79659566	34047840	Vicuna L	2021-05-28	Hum Genet	Novel loci and mapuche genetic ancestry are associated with pubertal growth traits in Chilean boys.	Peak height velocity	440 Chilean boys, 464 Chilean girls	NA	12q15	DYRK2	rs79659566-?	NR	6E-7	(boys)	0.92	[NR] unit decrease	Illumina [774433] (imputed)	N
1103	chr12	68017194	68017195	rs11176810	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	CAND1	rs11176810-?	NR	7E-6	(kynurenic acid)	0.19150068	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1103	chr12	68018545	68018546	rs78308377	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	12q15	DYRK2, LOC101927901	rs78308377-?		9E-6	(dominant)	0.442	[NR] unit increase	Illumina [1492601] (imputed)	N
1103	chr12	68018545	68018546	rs78308377	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	12q15	DYRK2, LOC101927901	rs78308377-?		8E-6	(heterogeneous)	0.447	[0.25-0.64] unit increase	Illumina [1492601] (imputed)	N
1104	chr12	68042058	68042059	rs2700068	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q15	NR	rs2700068-A	0.366417	1E-8		0.0183527	[0.012-0.025] unit increase	NR [19129689] (imputed)	N
1104	chr12	68089327	68089328	rs1154752	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q15	NR	rs1154752-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1104	chr12	68089327	68089328	rs1154752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q15		rs1154752-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1105	chr12	68174039	68174040	rs184695264	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q15	Intergenic	rs184695264-T	0.005	4E-6	(liability model)	0.58	[0.33-0.83] unit increase	NR [19725427] (imputed)	N
1105	chr12	68205603	68205604	rs1819844	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q15	NR	rs1819844-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1105	chr12	68205603	68205604	rs1819844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q15		rs1819844-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1105	chr12	68205603	68205604	rs1819844	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q15	NA	rs1819844-A	0.1694	2E-11		0.0142	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1105	chr12	68205603	68205604	rs1819844	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q15	NR	rs1819844-A	NR	2E-14		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1105	chr12	68216238	68216239	rs35227403	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q15		rs35227403-A	0.05	5E-26		10.55	z score increase	Affymetrix [9061022] (imputed)	N
1105	chr12	68216238	68216239	rs35227403	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q15		rs35227403-A	0.05	4E-13		7.27	z score increase	Affymetrix [9061022] (imputed)	N
1105	chr12	68216238	68216239	rs35227403	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q15		rs35227403-A	0.05	4E-17		8.41	z score increase	Affymetrix [9061022] (imputed)	N
1105	chr12	68216238	68216239	rs35227403	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q15	NR	rs35227403-A	0.0573	3E-12				NR [9056863] (imputed)	N
1105	chr12	68216238	68216239	rs35227403	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q15	NR	rs35227403-A	0.0573	2E-11				NR [9056863] (imputed)	N
1105	chr12	68217658	68217659	rs1981764	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q15	DYRK2-IFNG	rs1981764-G	0.127	1E-6		0.048	[0.028-0.068] cups per day increase	Illumina [5256047] (imputed)	N
1105	chr12	68231240	68231241	rs10878674	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q15	IFNG-AS1, RPL39P28, DYRK2	rs10878674-G	NR	9E-6	(daytime napping duration)	0.07141	[0.04-0.103] unit increase	Affymetrix [7141204] (imputed)	N
1105	chr12	68250404	68250405	rs117013993	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	12q15	NR	rs117013993-G	0.01949	4E-6		0.4968	[0.29-0.71] unit decrease	Illumina [10677593] (imputed)	N
1105	chr12	68287317	68287318	rs11176927	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q15		rs11176927-C	0.512	3E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1105	chr12	68287317	68287318	rs11176927	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q15	NR	rs11176927-T	0.488	1E-9		0.00655814	[0.0044-0.0087] unit decrease	NR [9732723] (imputed)	N
1106	chr12	68289581	68289582	rs12424607	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q15	Intergenic	rs12424607-T	0.7282	3E-8	(MTAG)	0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1106	chr12	68295551	68295552	rs11176932	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	12q15	NR	rs11176932-?	NR	3E-6		0.11735867	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1106	chr12	68319996	68319997	rs34528337	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12q15	NR	rs34528337-C	NR	3E-6	(GEE model)	1.2485	[0.72-1.77] unit decrease	NR [NR] (imputed)	N
1106	chr12	68385865	68385866	rs10492201	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q15	DYRK2, IFNG	rs10492201-G	0.866	6E-7	(women)	0.0325159	[0.02-0.045] unit decrease	Illumina [13520550] (imputed)	N
1106	chr12	68390200	68390201	rs2906856	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q15	DYRK2, FNG	rs2906856-T	0.353	1E-12		0.038755	[0.028-0.049] unit increase	Illumina [13520550] (imputed)	N
1106	chr12	68413470	68413471	rs3814244	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	12q15	DYRK2, IFNG	rs3814244-T	0.401	9E-10		0.0217492	[0.015-0.029] unit decrease	Illumina [13519193] (imputed)	N
1106	chr12	68413470	68413471	rs3814244	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q15	Intergenic	rs3814244-T	NR	1E-6	(men)	0.0217989	[0.013-0.031] unit decrease	Illumina [13520550] (imputed)	N
1106	chr12	68414709	68414710	rs10878725	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q15	DYRK2, IFNG	rs10878725-T	0.57	4E-11		0.0210225	[0.015-0.027] unit increase	Illumina [13520550] (imputed)	N
1107	chr12	68420402	68420403	rs12832728	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q15	IFNG, DYRK2	rs12832728-G	0.453	2E-20		0.0342799	[0.027-0.042] unit decrease	Illumina [13520550] (imputed)	N
1107	chr12	68422028	68422029	rs3741647	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	12q15	intergenic	rs3741647-T	NR	3E-6		0.109497	[0.063-0.156] unit decrease	Illumina [7433384] (imputed)	N
1107	chr12	68435315	68435316	rs10748094	29518117	Lee HS	2018-03-08	PLoS One	Nuclear receptor and VEGF pathways for gene-blood lead interactions, on bone mineral density, in Korean smokers.	Bone mineral density x blood lead interaction in current smokers (2df test)	119 Korean ancestry current smokers	NA	12q15	IFG-AS1	rs10748094-?		6E-6				Affymetrix [344396]	N
1107	chr12	68437932	68437933	rs7486855	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	12q15	IFNG	rs7486855-?	NR	3E-6		1.1627907	[1.09-1.23]	Illumina [at least 5000000] (imputed)	N
1107	chr12	68438911	68438912	rs6581787	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	12q15	NR	rs6581787-T	0.631554	9E-6		4.44672	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
1107	chr12	68444196	68444197	rs1548654	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q15	NR	rs1548654-?	NR	3E-24				Affymetrix [NR]	N
1107	chr12	68461696	68461697	rs2041862	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	12q15	DYRK2, IFNG	rs2041862-?	NR	2E-7	(Hispanic)	1.5151515	[1.3-1.75]	Illumina [at least 5000000] (imputed)	N
1107	chr12	68476748	68476749	rs35788599	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	12q15	NR	rs35788599-G	0.62	3E-11		0.89	[NR]	NR [8546065] (imputed)	N
1107	chr12	68490339	68490340	rs10735946	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q15	IFNG	rs10735946-C	0.387	3E-6				Illumina [4404269] (imputed)	N
1107	chr12	68497407	68497408	rs12817473	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	12q15		rs12817473-?	NR	7E-8		0.046	NR unit increase	NR [5896510] (imputed)	N
1107	chr12	68499236	68499237	rs11177053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q15		rs11177053-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1107	chr12	68499985	68499986	rs7134472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q15	NR	rs7134472-A	0.3855	6E-37	(EA)	1.1745031	[1.15-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1107	chr12	68499985	68499986	rs7134472	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q15	NR	rs7134472-A	0.3855	2E-6	(EA)	1.0596101	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1107	chr12	68500074	68500075	rs7134599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	12q15		rs7134599-A	NR	4E-8		0.113	[0.073-0.153] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
1107	chr12	68500074	68500075	rs7134599	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	12q15	IFNG, IL26, IL22	rs7134599-A	0.378	9E-32		1.096	[1.064-1.128]	Affymetrix, Illumina [1230000] (imputed)	N
1107	chr12	68500074	68500075	rs7134599	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	12q15	IFNG, IL26	rs7134599-A	0.39	1E-16		1.19	[1.19-1.24]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1107	chr12	68500637	68500638	rs722749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	12q15		rs722749-G	NR	4E-8		0.0497	[0.032-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1107	chr12	68503835	68503836	rs12318183	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q15	NR	rs12318183-?	NR	2E-27	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1107	chr12	68504591	68504592	rs1558744	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	12q15	IFNG, IL26	rs1558744-A	NR	4E-12		1.2	[NR]	Illumina [266047]	N
1107	chr12	68504591	68504592	rs1558744	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	12q15	IFNG, IL26, IL22	rs1558744-A	0.38	3E-12		1.35		Illumina [280748]	N
1107	chr12	68508121	68508122	rs11614178	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	12q15	Intergenic	rs11614178-?		1E-29				Illumina [9578670] (imputed)	N
1107	chr12	68508121	68508122	rs11614178	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	12q15	Intergenic	rs11614178-?		4E-23				Illumina [9725440] (imputed)	N
1107	chr12	68508121	68508122	rs11614178	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12q15	IFNG-AS1	rs11614178-?	NR	2E-34	(subset analysis)			Illumina [130052]	N
1107	chr12	68517876	68517877	rs4913405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q15	IFNG-AS1	rs4913405-A	0.753547	1E-18		0.023061765	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1107	chr12	68517876	68517877	rs4913405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q15	IFNG-AS1	rs4913405-A	0.753535	3E-13		0.01898555	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1107	chr12	68517876	68517877	rs4913405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs4913405-A	0.762316	1E-13				Affymetrix, Illumina [24588908] (imputed)	N
1107	chr12	68517876	68517877	rs4913405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q15	NR	rs4913405-A	0.756135	6E-16		0.017388	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1107	chr12	68520693	68520694	rs1118865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q15		rs1118865-A	NR	3E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1107	chr12	68520750	68520751	rs1118866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs1118866-T	0.679442	7E-11				Affymetrix, Illumina [23472807] (imputed)	N
1107	chr12	68520750	68520751	rs1118866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q15	NR	rs1118866-T	0.703532	1E-12		0.014779	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1107	chr12	68532076	68532077	rs12321565	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	12q15	NR	rs12321565-?	NR	5E-6		1.3481	[NR]	Affymetrix [722112]	N
1107	chr12	68534339	68534340	rs2216164	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12q15	IFNG, IL26, IL22	rs2216164-G	NR	4E-7		1.1967448		Illumina [1233578] (imputed)	N
1107	chr12	68536627	68536628	rs2193047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q15	NR	rs2193047-C	NR	5E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix [9000000] (imputed)	N
1107	chr12	68543239	68543240	rs6581793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs6581793-A	0.668577	5E-10				Affymetrix, Illumina [24649327] (imputed)	N
1108	chr12	68560253	68560254	rs4913408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q15	IFNG-AS1	rs4913408-A	0.704635	2E-10		0.015334269	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr12	68569430	68569431	rs75541908	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	12q15	NR	rs75541908-?	NR	5E-6		4.3111	[0.17-8.45] unit decrease	Illumina [at least 560000] (imputed)	N
1108	chr12	68574041	68574042	rs10784685	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	12q15	NR	rs10784685-T	0.2807	5E-7		0.0844	[0.051-0.117] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1108	chr12	68587154	68587155	rs759488	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q15	NR	rs759488-C	0.70489	3E-11		0.013512	[0.0095-0.0175] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1108	chr12	68587338	68587339	rs10748099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q15	IFNG-AS1	rs10748099-C	0.703375	2E-10		0.015369292	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr12	68596660	68596661	rs2870946	19122664	Silverberg MS	2009-01-04	Nat Genet	Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study.	Ulcerative colitis	1,022 European ancestry cases, 2,503 European ancestry controls	1,387 European ancestry cases, 1,115 European ancestry controls	12q15	IL26	rs2870946-G	0.055	5E-7		1.54		Illumina [280748]	N
1108	chr12	68609045	68609046	rs10878791	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	12q15	NR	rs10878791-?	NR	2E-6	(AA)	1.4925373	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1108	chr12	68621976	68621977	rs183884080	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q15	Intergenic	rs183884080-G	0.999	2E-6	(AA)	1.307	NR unit increase	Illumina [NR] (imputed)	N
1108	chr12	68632847	68632848	rs559920640	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	12q15	NR	rs559920640-?	NR	6E-6		0.718006	[0.41-1.03] unit increase	NR [13958389] (imputed)	N
1108	chr12	68633002	68633003	rs67784164	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (joint pain)	251 Japanese ancestry female cases, 5,483 Japanese ancestry female controls	277 Japanese ancestry female cases, 5,337 Japanese ancestry female controls	12q15	NR	rs67784164-A	0.417098773	2E-6		0.32047647	[0.19-0.45] unit decrease	Affymetrix [536506]	N
1108	chr12	68646136	68646137	rs2227492	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q15	NR	rs2227492-?	NR	8E-9				Illumina [7760689] (imputed)	N
1108	chr12	68646520	68646521	rs2227491	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	12q15		rs2227491-C	0.5922	3E-12		1.08		Affymetrix, Illumina [9397031] (imputed)	N
1108	chr12	68649132	68649133	rs2227472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	12q15		rs2227472-C	NR	3E-11		0.0997	[0.07-0.129] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1108	chr12	68652098	68652099	rs3947727	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	12q15	NR	rs3947727-t	0.5994	1E-11		1.07	[1.05-1.10]	Affymetrix, Illumina [16201029] (imputed)	N
1108	chr12	68663375	68663376	rs17224761	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q15	NR	rs17224761-A	0.01568	2E-8	(FHL1)	0.006466	NR unit increase	Illumina [1671387] (imputed)	N
1108	chr12	68665939	68665940	rs1038165	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q15		rs1038165-?	NR	2E-8		0.0115149	[0.0075-0.0155] unit decrease	NR [6912294] (imputed)	N
1108	chr12	68665939	68665940	rs1038165	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12q15		rs1038165-C	0.416651	2E-9		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
1108	chr12	68667461	68667462	rs10506557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q15		rs10506557-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1109	chr12	68720334	68720335	rs17224845	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q15		rs17224845-T	0.18	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1109	chr12	68733834	68733835	rs28445463	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q15	NR	rs28445463-A	0.1558	7E-10				NR [9056863] (imputed)	N
1109	chr12	68733834	68733835	rs28445463	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q15		rs28445463-?	NR	2E-8				NR [9705931] (imputed)	N
1109	chr12	68737262	68737263	rs11177175	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q15		rs11177175-A	0.18	2E-24		10.19	z score increase	Affymetrix [9061022] (imputed)	N
1109	chr12	68737262	68737263	rs11177175	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q15		rs11177175-A	0.18	2E-12		7.03	z score increase	Affymetrix [9061022] (imputed)	N
1109	chr12	68737262	68737263	rs11177175	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q15	NR	rs11177175-A	0.1568	3E-16				NR [9056863] (imputed)	N
1109	chr12	68779412	68779413	rs416350	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q15	MDM1	rs416350-?	NR	4E-8	(Hyperthymic)	2.1	[NR] unit increase	Affymetrix [703012]	N
1109	chr12	68786762	68786763	rs56332714	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02384	rs56332714-?	NR	1E-8	(male)	4.99036	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1109	chr12	68812040	68812040	rs10630990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	12q15		rs10630990-G	0.236006	2E-8		0.0269703	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1110	chr12	68823114	68823115	rs7959783	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced proteinuria	1,039 European ancestry individuals	NA	12q15	intergenic	rs7959783-?	0.26	7E-6		0.73	[0.42-1.04] unit increase	Illumina [828141]	N
1110	chr12	68828429	68828430	rs748156931	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q15	RP11-81H14.2	rs748156931-T	0.9989	1E-6		2.1378	[1.28-3] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1110	chr12	68875885	68875886	rs11177248	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	12q15	NR	rs11177248-G	NR	4E-6		0.3073	[0.18-0.44] SD units decrease	NR [10700000] (imputed)	N
1110	chr12	68876786	68876787	rs2052387	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	12q15	NR	rs2052387-A	0.357	2E-7		1.08546		NR [9372253] (imputed)	N
1110	chr12	68881048	68881049	rs10878840	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q15	intergenic	rs10878840-G	0.381	7E-7		1.0585483		NR [9372253] (imputed)	N
1110	chr12	68882039	68882040	rs7311899	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	12q15	LINC02384, RAP1B	rs7311899-?		1E-5	(African American)	0.10948604	[0.061-0.158] unit increase	Illumina [13620258] (imputed)	N
1110	chr12	68922644	68922645	rs73134637	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	12q15	RAP1B	rs73134637-T	NR	3E-7				Affymetrix, Illumina [12061510] (imputed)	N
1110	chr12	68922644	68922645	rs73134637	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	12q15	RAP1B	rs73134637-T	NR	9E-7		0.11	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1111	chr12	68955571	68955572	rs150516896	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	NR	rs150516896-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1111	chr12	68956184	68956185	rs114588203	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	NR	rs114588203-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1111	chr12	68957163	68957164	rs116075389	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q15	NR	rs116075389-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1111	chr12	68961583	68961584	rs12313946	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	12q15	RAP1B, NUP107, SLC35E3	rs12313946-C	0.47	3E-8		0.065	[0.041-0.089] unit increase	Illumina [561583]	N
1111	chr12	69037697	69037698	rs77105239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs77105239-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1112	chr12	69179928	69179929	rs11177372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q15	SLC35E3	rs11177372-C	0.402725	5E-9		0.0133850705	[0.0089-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr12	69188465	69188466	rs113933710	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	12q15		rs113933710-?	NR	3E-6		0.14399403	[0.084-0.204] unit decrease	Illumina [9939936] (imputed)	N
1112	chr12	69194833	69194834	rs3879293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs3879293-T	0.368449	1E-17				Affymetrix, Illumina [24332387] (imputed)	N
1112	chr12	69194833	69194834	rs3879293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q15	NR	rs3879293-T	0.403837	7E-18		0.016167	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1112	chr12	69195751	69195752	rs11177378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q15	RP11-611O2.2	rs11177378-A	0.405306	5E-10		0.0141288135	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr12	69195751	69195752	rs11177378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q15	RP11-611O2.2	rs11177378-A	0.405209	8E-10		0.0140104	[0.0099-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr12	69195751	69195752	rs11177378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q15	RP11-611O2.2	rs11177378-A	0.405177	6E-9		0.013051441	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr12	69195751	69195752	rs11177378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs11177378-A	0.372492	5E-15				Affymetrix, Illumina [24246363] (imputed)	N
1113	chr12	69216520	69216521	rs3730556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q15	NR	rs3730556-G	0.403684	8E-15		0.014437	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1113	chr12	69216520	69216521	rs3730556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q15	NR	rs3730556-G	0.405061	1E-10		0.012639	[0.0088-0.0165] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1113	chr12	69220635	69220636	rs3730590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q15		rs3730590-T	NR	2E-11		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1113	chr12	69220635	69220636	rs3730590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q15	MDM2	rs3730590-T	0.404808	4E-11		0.01481953	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr12	69220635	69220636	rs3730590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q15		rs3730590-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1113	chr12	69220635	69220636	rs3730590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q15		rs3730590-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1113	chr12	69240829	69240830	rs73144210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q15		rs73144210-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1113	chr12	69299465	69299466	rs117949737	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		12q15	CPM	rs117949737-G	0.974	8E-6		0.04	[0.022-0.058] dioptres increase	NR [5900115] (imputed)	N
1114	chr12	69338636	69338637	rs1144964	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	12q15	NR	rs1144964-?	NR	4E-7	(AA)	1.4925373	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1114	chr12	69370755	69370756	rs9943849	20673876	Rietschel M	2010-07-29	Biol Psychiatry	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	12q15	CPM	rs9943849-T	0.73	3E-6		1.37	[1.20-1.56]	Illumina [491238]	N
1114	chr12	69382835	69382836	rs2870831	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q15	NR	rs2870831-?	NR	3E-7				Affymetrix [NR]	N
1114	chr12	69394707	69394708	rs4913485	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	12q15	CPM	rs4913485-T	0.697	6E-6	(Stability score)	0.6376	[0.36-0.91] unit decrease	Affymetrix [8042262] (imputed)	N
1114	chr12	69397788	69397789	rs57514780	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q15	NR	rs57514780-?	NR	1E-7		0.3512	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1114	chr12	69413650	69413651	rs139502508	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	K10 sp001941205 abundance in stool	5,959 Finnish ancestry individuals	NA	12q15		rs139502508-T	0.0127774	2E-8		0.260356	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
1114	chr12	69433403	69433404	rs1908671	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q15	CPM	rs1908671-C	0.292	8E-12	(Carboxypeptidase M, CPM.7768.10.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1114	chr12	69449210	69449211	rs116914846	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	12q15	NR	rs116914846-?	NR	4E-6		0.2936	[0.17-0.42] unit increase	Illumina [~ 7800000] (imputed)	N
1114	chr12	69465785	69465786	rs1489617829	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	12q15		rs1489617829-?	NR	4E-6				Illumina [7401356] (imputed)	N
1114	chr12	69466358	69466359	rs149693390	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	12q15	CPM	rs149693390-C	0.9879	3E-6		0.0336	[0.019-0.048] unit increase	Affymetrix [~ 7740000] (imputed)	N
1115	chr12	69482179	69482180	rs77839576	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	12q15	Intergenic	rs77839576-A	0.787665714	3E-6		0.178179	[0.1-0.25] unit increase	Illumina [6969139] (imputed)	N
1115	chr12	69504082	69504083	rs73329476	24986923	Chu M	2014-07-01	Hum Mol Genet	A genome-wide association study identifies susceptibility loci of silica-related pneumoconiosis in Han Chinese.	Pneumoconiosis in silica exposure	202 Han Chinese ancestry cases, 198 Han Chinese ancestry controls	490 Han Chinese ancestry cases, 541 Han Chinese ancestry controls	12q15	MDM2, CPSF6, CPM	rs73329476-T	0.102	2E-8		2.17	[1.66 - 2.85]	Illumina [710999] (imputed)	N
1115	chr12	69516641	69516642	rs11177505	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	12q15	intergenic	rs11177505-G	NR	3E-6		4.694	NR z score decrease	Illumina [1265623]	N
1115	chr12	69523922	69523923	rs10784762	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	12q15	intergenic	rs10784762-T		6E-6		2.38	[NR] ms decrease	Illumina [> 930000]	N
1115	chr12	69554128	69554129	rs114179644	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q15	Intergenic	rs114179644-T	0.969	8E-6	(liability model)	0.21	[0.11-0.31] unit decrease	NR [19725427] (imputed)	N
1115	chr12	69581221	69581222	rs12367448	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q15	NR	rs12367448-C	0.831671480195817	6E-6	(IGP57)	0.2468	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1115	chr12	69592270	69592271	rs10878941	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q15	NR	rs10878941-G	0.317	7E-7	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1115	chr12	69593882	69593883	rs12302044	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	12q15		rs12302044-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1116	chr12	69619735	69619736	rs11615712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs11615712-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1116	chr12	69622394	69622395	rs190154414	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q15		rs190154414-C	0.43	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
1116	chr12	69622394	69622395	rs190154414	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q15	NR	rs190154414-C	0.457	3E-11				NR [9056863] (imputed)	N
1116	chr12	69637846	69637847	rs317630	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	12q15	NR	rs317630-T	0.27	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1116	chr12	69639206	69639207	rs478863	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q15	CPSF6	rs478863-G	0.274025	8E-12		0.046254035	[0.033-0.06] unit increase	Affymetrix [7288503] (imputed)	N
1116	chr12	69642682	69642683	rs10878947	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q15	CPSF6	rs10878947-A	0.27337	1E-11		0.05999934	[0.043-0.077] unit increase	Affymetrix [7288503] (imputed)	N
1116	chr12	69644442	69644443	rs398020035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q15		rs398020035-G	NR	3E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1116	chr12	69645863	69645864	rs490872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q15		rs490872-G	NR	4E-9		0.032	[0.021-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1116	chr12	69655166	69655167	rs7969559	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q15		rs7969559-A	0.284	6E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1116	chr12	69655166	69655167	rs7969559	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q15	CPSF6	rs7969559-A		2E-10		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
1116	chr12	69655166	69655167	rs7969559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q15	NR	rs7969559-G	0.713	2E-11		0.00803583	[0.0057-0.0104] unit decrease	NR [9732723] (imputed)	N
1116	chr12	69655166	69655167	rs7969559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q15	NR	rs7969559-G	0.713	2E-9		0.017015876	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1116	chr12	69655166	69655167	rs7969559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q15		rs7969559-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1116	chr12	69669702	69669703	rs547827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q15		rs547827-A	NR	5E-11		0.0462	[0.032-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1116	chr12	69672470	69672471	rs479971	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q15	CPSF6	rs479971-A	0.2741	7E-10		0.015013441	[0.01-0.02] unit increase	Affymetrix [11514654] (imputed)	N
1116	chr12	69674594	69674595	rs650198	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q15		rs650198-C	0.31	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1116	chr12	69674594	69674595	rs650198	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q15	NA	rs650198-T	0.7294	6E-13		0.0137	[0.01-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1116	chr12	69681100	69681101	rs317656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q15	NR	rs317656-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1116	chr12	69681100	69681101	rs317656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q15		rs317656-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1116	chr12	69682326	69682327	rs4761228	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q15	NR	rs4761228-A	0.4624	2E-10				NR [9056863] (imputed)	N
1116	chr12	69686202	69686203	rs317660	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q15	CPSF6	rs317660-A	0.718	2E-9		0.0152	[0.01-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
1116	chr12	69702241	69702242	rs113479946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q15		rs113479946-G	NR	5E-8		0.0249	[0.016-0.034] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1116	chr12	69704276	69704277	rs530083623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q15		rs530083623-T	NR	1E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1116	chr12	69715456	69715457	rs317685	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q15	LYZ	rs317685-G	0.281102	1E-10		0.057492405	[0.04-0.075] unit increase	Affymetrix [7288503] (imputed)	N
1116	chr12	69726849	69726850	rs317688	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12q15	CNOT2	rs317688-?	NR	1E-8		0.017	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1117	chr12	69730877	69730878	rs7306409	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q15	NR	rs7306409-?	NR	7E-6				Affymetrix [NR]	N
1117	chr12	69732104	69732105	rs4761234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LYZ	5,347 Icelandic ancestry individuals	NA	12q15		rs4761234-C	0.4797	8E-200		0.492744	[0.46-0.52] unit decrease	Illumina [7506463] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q15		rs4761234-C	NR	2E-17		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs4761234-C	0.41701	9E-24		0.2835	[0.23-0.34] unit decrease	Illumina [17914520] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs4761234-C	0.4171	2E-15		0.2175	[0.16-0.27] unit decrease	Illumina [18030638] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q15	NR	rs4761234-C	0.485258	3E-18		0.019883828	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q15		rs4761234-C	0.485337	1E-27		0.02418069	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q15		rs4761234-C	0.485268	2E-24		0.02260657	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q15		rs4761234-C	0.485335	5E-20		0.020304617	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs4761234-C	0.458309	6E-15				Affymetrix, Illumina [24649327] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q15	NR	rs4761234-C	0.4824	2E-16		0.015191	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs4761234-C	0.464448	3E-27				Affymetrix, Illumina [23114412] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q15	NR	rs4761234-C	0.483663	4E-29		0.021599	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q15	LYZ	rs4761234-T	0.515633	4E-12		0.0138507	[0.0099-0.0178] unit increase	Affymetrix [NR] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q15	LYZ	rs4761234-T	0.52125	3E-104	(LYZ, 4920_10_1)	0.5114519	[0.47-0.56] unit increase	Illumina [> 1000000] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q15	LYZ	rs4761234-C	0.473	4E-89	(Lysozyme C, LYZ.4920.10.1)	0.47	[0.43-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q15	intergenic	rs4761234-C	0.4859	8E-10		0.02207352	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q15	intergenic	rs4761234-C	0.4859	2E-10		0.02304096	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12q15	intergenic	rs4761234-C	0.486	1E-11		0.02430621	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q15	intergenic	rs4761234-C	0.4859	1E-10		0.02309014	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69732104	69732105	rs4761234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q15	intergenic	rs4761234-C	0.4859	1E-9		0.0220094	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69734640	69734641	rs2168029	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q15		rs2168029-A	0.49	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
1117	chr12	69735491	69735492	rs7959452	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q15	LYZ, RP11-1143G9.4, RP11-1143G9.5	rs7959452-G	0.498993	1E-60	(EA, Lysozyme C)	0.6709	[0.6-0.75] unit decrease	Affymetrix [509946]	N
1117	chr12	69744013	69744014	rs1800973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q15		rs1800973-A	NR	3E-133		0.1184	[0.11-0.13] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q15		rs1800973-A	NR	9E-10		0.0308	[0.021-0.041] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12q15		rs1800973-C	0.938	6E-67				Affymetrix [10369434] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q15		rs1800973-C	0.938	9E-63				Affymetrix [10369434] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q15	NR	rs1800973-A	NR	2E-10		0.0321	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.08409	6E-12		0.3487	[0.25-0.45] unit decrease	Illumina [17926605] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.08439	2E-145		1.218	[1.13-1.31] unit decrease	Illumina [17914520] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.08449	3E-114		1.048	[0.96-1.13] unit decrease	Illumina [18030638] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	PDL-1 on CD14- CD16-	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	2E-10		0.2797	[0.19-0.37] unit decrease	Illumina [18218967] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	3E-8		0.2562	[0.17-0.35] unit decrease	Illumina [18218967] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	8E-12		0.315	[0.23-0.4] unit decrease	Illumina [18218967] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	1E-11		0.3123	[0.22-0.4] unit decrease	Illumina [18218967] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.08439	2E-8		0.2824	[0.18-0.38] unit decrease	Illumina [17914520] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16- Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	7E-12		0.3084	[0.22-0.4] unit increase	Illumina [18224179] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14- CD16-	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q15		rs1800973-A	0.07976	3E-8		0.2492	[0.16-0.34] unit decrease	Illumina [18218967] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q15	LYZ	rs1800973-A	0.0611120000000001	6E-15		0.037093706	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q15	LYZ	rs1800973-A	0.061183	7E-139		0.11612971	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q15	LYZ	rs1800973-A	0.061169	9E-169		0.12800159	[0.12-0.14] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q15	NR	rs1800973-A	0.059577	3E-184				Affymetrix, Illumina [23467995] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q15	NR	rs1800973-A	0.061915	2E-187		0.113424	[0.11-0.12] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q15	NR	rs1800973-C	0.938816	1E-11		0.0294971	[0.021-0.038] unit decrease	NR [NR]	N
1117	chr12	69744013	69744014	rs1800973	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	12q15		rs1800973-A	0.06832099999999997	1E-32		1.108033	[1.09-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q15		rs1800973-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q15	NR	rs1800973-A	0.065	2E-54	(Lysozyme C, LYZ.4920.10.1)	0.75	[0.65-0.85] unit increase	Affymetrix [10572788] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q15	LYZ, RP11-1143G9.4	rs1800973-A	0.07236181	2E-29	(EA, Lysozyme C)	0.9525	[0.79-1.11] unit increase	Affymetrix [509946]	N
1117	chr12	69744013	69744014	rs1800973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q15	LYZ	rs1800973-A	0.0617	4E-46		0.1056857	[0.091-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q15	LYZ	rs1800973-A	0.0617	1E-53		0.1145819	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69744013	69744014	rs1800973	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q15	LYZ	rs1800973-A	0.0617	1E-31		0.08705901	[0.073-0.102] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1117	chr12	69748396	69748397	rs57954211	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	12q15	NR	rs57954211-?	NR	9E-20	(Lysozyme)			Illumina [~ 4000000] (imputed)	N
1117	chr12	69750838	69750839	rs3825243	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	12q15	LYZ, YEATS4	rs3825243-A	0.04063	2E-6		0.109939	NR unit increase	Illumina [560351]	N
1117	chr12	69750838	69750839	rs3825243	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or conscientiouness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	12q15	YEATS4	rs3825243-A	NR	4E-8				NR [NR] (imputed)	N
1117	chr12	69752199	69752200	rs589448	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	12q15	NR	rs589448-?	NR	7E-10	(Lysozyme C)			Illumina [514227]	N
1117	chr12	69752508	69752509	rs7136238	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals, 295,150 individuals	NA	12q15	NR	rs7136238-T	NR	4E-8		0.014	[0.0081-0.0199] unit decrease	Illumina [2775252] (imputed)	N
1117	chr12	69757930	69757931	rs645026	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q15	NA	rs645026-A	0.741	7E-10		0.0118	[0.0081-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
1117	chr12	69768984	69768985	rs4622313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q15		rs4622313-T	NR	9E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1117	chr12	69770311	69770312	rs73151676	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q15		rs73151676-C	0.821	2E-8				Affymetrix [10369434] (imputed)	N
1117	chr12	69794085	69794086	rs315145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q15		rs315145-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1117	chr12	69799689	69799690	rs10878977	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	12q15	Intergenic	rs10878977-?		8E-6		1.407	[NR]	Affymetrix [492217] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q15		rs10748128-T	NR	8E-64		0.0227	[0.02-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q15		rs10748128-T	0.672366	1E-15		0.0170245	[0.013-0.021] unit increase	Illumina [13479295] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q15	RP11-159A18.1	rs10748128-T	NR	4E-9		0.0176397	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q15	RP11-159A18.1	rs10748128-T	NR	1E-16		0.0245417	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q15	RP11-159A18.1	rs10748128-T	NR	8E-14		0.0240676	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q15	intergenic	rs10748128-T	0.3446	7E-38		0.0255	[0.022-0.029] unit increase	Affymetrix [18391927] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q15	YEATS4, FRS2	rs10748128-?	NR	6E-18		0.02607223	[0.02-0.032] unit increase	Illumina [27896057] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q15	FRS2	rs10748128-T	0.348	9E-7	(EA,men)	0.0279	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q15	FRS2	rs10748128-T	0.348	4E-9	(EA)	0.0233	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q15	FRS2	rs10748128-T	0.63	7E-7		0.029	[0.015-0.043] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q15	FRS2	rs10748128-T	0.352	4E-29		0.038	[0.032-0.044] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q15	FRS2	rs10748128-T	0.35	7E-15		1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1117	chr12	69827657	69827658	rs10748128	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q15	FRS2	rs10748128-T	0.35	2E-20		0.038	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1117	chr12	69828035	69828036	rs10784781	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	12q15	YEATS4, FRS2	rs10784781-?	NR	4E-6		1.5360984	NR	Affymetrix, Illumina [7062950] (imputed)	N
1117	chr12	69828533	69828534	rs10878984	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q15	FRS2	rs10878984-C	0.656449	3E-9		0.0115737	[0.0077-0.0154] unit increase	NR [13737936] (imputed)	N
1117	chr12	69828533	69828534	rs10878984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs10878984-?	NR	4E-103				NR [~ 8900000] (imputed)	N
1117	chr12	69828533	69828534	rs10878984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q15		rs10878984-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1117	chr12	69828533	69828534	rs10878984	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q15		rs10878984-?	NR	2E-9		0.012187	[0.0079-0.0165] unit increase	Affymetrix [20259828] (imputed)	N
1117	chr12	69828533	69828534	rs10878984	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q15	RPS26P45	rs10878984-T	0.3466	4E-13		0.0484	[0.035-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1117	chr12	69828680	69828681	rs11177669	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q15	FRS2, LYZ, YEATS4, CPSF6, CCT2, LRRC10	rs11177669-A	0.31	3E-6		4.5	[2.54-6.46] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1117	chr12	69831693	69831694	rs10878986	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12q15	YEATS4, FRS2	rs10878986-C	0.385375798828641	2E-8		0.0269	[0.017-0.036] SD decrease	Illumina [22400000] (imputed)	N
1117	chr12	69831983	69831984	rs11177671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q15	RP11-956E11.1	rs11177671-C	NR	2E-11		0.0223076	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
1117	chr12	69831983	69831984	rs11177671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q15	RP11-956E11.1	rs11177671-C	NR	3E-10		0.0226751	[0.016-0.03] unit increase	Affymetrix [323123] (imputed)	N
1117	chr12	69832066	69832067	rs11177672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q15	RP11-956E11.1	rs11177672-T	NR	4E-8		0.0233052	[0.015-0.032] unit increase	Affymetrix [321016] (imputed)	N
1117	chr12	69832066	69832067	rs11177672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q15	RP11-956E11.1	rs11177672-T	NR	6E-9		0.0269026	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
1117	chr12	69832066	69832067	rs11177672	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q15	NR	rs11177672-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1117	chr12	69834493	69834494	rs7304309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	YEATS4	rs7304309-?	NR	4E-6	(TAG 50:3)	0.22677529	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1117	chr12	69834493	69834494	rs7304309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	YEATS4	rs7304309-?	NR	2E-6	(TAG 52:2)	0.23862806	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1117	chr12	69842642	69842643	rs6581895	29786918	Vonk JM	2018-05-22	Clin Exp Allergy	Novel genes and insights in complete asthma remission.	Complete remission in asthma	55 European ancestry remitted asthma cases, 612 European ancestry persistent asthma controls	21 European ancestry remitted asthma cases, 321 European ancestry persistent asthma controls	12q15	YEATS4, FRS2	rs6581895-G		5E-7		3.81	[NR]	Illumina [156954]	N
1117	chr12	69855909	69855910	rs11177683	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q15	RP11-956E11.1	rs11177683-A	0.2687	5E-6		0.0329	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chr12	69930482	69930483	rs149518362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs149518362-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1118	chr12	69934115	69934116	rs776434	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	12q15	FRS2	rs776434-A	NR	4E-14		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1118	chr12	69934115	69934116	rs776434	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	12q15	FRS2	rs776434-A	NR	3E-11		1.0477028	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
1118	chr12	69967861	69967862	rs547497	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	12q15		rs547497-G	0.74	3E-8		0.028	L increase	Affymetrix [NR] (imputed)	N
1118	chr12	69979114	69979115	rs2601007	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q15	NR	rs2601007-G	0.65392	3E-10		0.00524054	[0.0035-0.007] unit increase	Affymetrix [16582909] (imputed)	N
1118	chr12	69979114	69979115	rs2601007	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q15	NR	rs2601007-G	0.65392	2E-7		0.0051933	[0.0033-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1118	chr12	69979516	69979517	rs2601006	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	12q15	CCT2	rs2601006-C	0.657	1E-12	(EA)	0.015	[0.011-0.019] unit increase	NR [12082474] (imputed)	N
1118	chr12	69979516	69979517	rs2601006	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	12q15	CCT2	rs2601006-T	0.343	2E-13		0.015452	[0.011-0.02] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1118	chr12	69979516	69979517	rs2601006	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	12q15	CCT2	rs2601006-C	0.657	4E-9		0.01086	[0.0073-0.0145] unit increase	Affymetrix [11709857] (imputed)	N
1118	chr12	69979516	69979517	rs2601006	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	12q15	CCT2	rs2601006-C	0.657	2E-11		0.01176	[0.0083-0.0152] unit increase	Affymetrix [11709857] (imputed)	N
1119	chr12	69997421	69997422	rs61929307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q15	NR	rs61929307-G	0.340757	2E-8		0.00709293	[0.0047-0.0095] unit increase	Affymetrix [16582621] (imputed)	N
1119	chr12	69997421	69997422	rs61929307	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q15	NR	rs61929307-G	0.340757	1E-7		0.00667004	[0.0041-0.0092] unit increase	Affymetrix [16582614] (imputed)	N
1119	chr12	69997421	69997422	rs61929307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q15		rs61929307-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1119	chr12	70013414	70013415	rs71454237	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q15	LRRC10	rs71454237-G	0.791	2E-13		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
1119	chr12	70054909	70054910	rs1373453	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	12q15	NR	rs1373453-?	NR	2E-6	(Meta-All, NSCL/P)			NR [497084]	N
1119	chr12	70055784	70055785	rs11177782	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	12q15	BEST3, FRS2, MIR3913-1, MIR3913-2, CCT2, LRRC10, RAB3IP	rs11177782-T	0.02	4E-7		0.98	[0.61-1.35] unit increase	Illumina [7797256] (imputed)	N
1119	chr12	70069618	70069619	rs710719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q15		rs710719-C	NR	8E-9		0.057	[0.038-0.076] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1119	chr12	70071512	70071513	rs775498	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q15	LRRC10	rs775498-G	0.280	9E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1119	chr12	70073217	70073218	rs11177789	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q15	NR	rs11177789-?	NR	1E-8				Affymetrix [NR]	N
1119	chr12	70080152	70080153	rs12322558	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	12q15	NR	rs12322558-G	0.09	1E-6	(Male)	8.34	[5.18-11.5] g decrease	Illumina [509842]	N
1119	chr12	70088343	70088344	rs75229567	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q15	BEST3	rs75229567-?	NR	9E-7		0.041	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1119	chr12	70097463	70097464	rs35349325	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q15	BEST3	rs35349325-T	0.54	9E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1119	chr12	70097463	70097464	rs35349325	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q15	BEST3	rs35349325-T	0.53	8E-13	(EA)	1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1120	chr12	70213004	70213005	rs4761169	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q15	RAB3IP, AC025263.3	rs4761169-C	0.7348	3E-6		0.0355	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1120	chr12	70236354	70236355	rs118190591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs118190591-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1121	chr12	70314163	70314164	rs79802413	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q15	NR	rs79802413-A	0.01394	5E-14	(IGLL5)	0.2236	NR unit increase	Illumina [1671387] (imputed)	N
1121	chr12	70325668	70325669	rs1152958	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q15	RAB3IP, CNOT2	rs1152958-G		4E-8		0.138	unit increase	Affymetrix [at least 2696785] (imputed)	N
1121	chr12	70331826	70331827	rs789560	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	12q15	C12orf28	rs789560-G	0.87	7E-6				Perlegen [378332]	N
1121	chr12	70369917	70369918	rs710698	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	12q15	MYRFL	rs710698-G	0.2966	4E-6		6.8545	[3.93-9.78] unit increase	Affymetrix [NR] (imputed)	N
1121	chr12	70378252	70378253	rs11514295	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	12q15	intergenic	rs11514295-?	NR	6E-6		1.978587	[1.474307-2.655353]	Illumina [at least 4483243] (imputed)	N
1122	chr12	70391728	70391729	rs147985478	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q15	Intergenic	rs147985478-A	0.977	3E-6	(liability model)	0.25	[0.15-0.35] unit increase	NR [19725427] (imputed)	N
1122	chr12	70422479	70422480	rs789336	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	12q15	C12orf28	rs789336-C	0.6082	1E-7		1.369	[1.217-1.540]	Illumina [7521072] (imputed)	N
1122	chr12	70431899	70431900	rs7486501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q15		rs7486501-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1122	chr12	70482325	70482326	rs141089639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q15	RP11-611E13.2	rs141089639-G	0.150306	3E-11		0.0209866	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1123	chr12	70527055	70527056	rs75616385	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	12q15		rs75616385-G	0.91	5E-6		0.887	[0.843-0.933]	Affymetrix, Illumina [NR] (imputed)	N
1123	chr12	70541805	70541806	rs7969255	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	12q15	LOC100125409	rs7969255-T	0.5313	8E-7		1.325	[1.184-1.481]	Illumina [7521072] (imputed)	N
1123	chr12	70563864	70563865	rs7315956	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	12q15	NR	rs7315956-G	0.34	9E-10		1.13	[1.08-1.18]	Illumina [at least 371504] (imputed)	N
1123	chr12	70612234	70612235	rs6581928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q15		rs6581928-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1124	chr12	70651170	70651171	rs58355101	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	12q15	CNOT2	rs58355101-T	0.5658	9E-7		1.35	[1.198-1.521]	Illumina [7521072] (imputed)	N
1124	chr12	70677632	70677633	rs1464738	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	KCNMB4	rs1464738-?	NR	2E-6	(threonine)	0.67131096	[0.4-0.95] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1124	chr12	70677632	70677633	rs1464738	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q15	KCNMB4	rs1464738-?	NR	2E-6	(histidine)	0.669563	[0.39-0.95] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1124	chr12	70690084	70690085	rs2904524	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	12q15	CNOT2	rs2904524-T	0.13	5E-6	(Joint)			Illumina [254145]	N
1124	chr12	70752843	70752844	rs1495352	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	12q15	CNOT2	rs1495352-A	0.5489	3E-6		1.31	[1.169-1.468]	Illumina [7521072] (imputed)	N
1124	chr12	70772163	70772164	rs12230076	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	12q15	KCNMB4	rs12230076-G	0.11	3E-6	(female)	0.0938	[0.055-0.133] unit increase	Illumina [6380737] (imputed)	N
1125	chr12	70790111	70790112	rs79237130	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q15	KCNMB4	rs79237130-A	0.1606	1E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1125	chr12	70819949	70819950	rs11178235	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		KCNMB4	rs11178235-?	NR	7E-6	(male)	0.462789	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1125	chr12	70821672	70821673	rs394571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs394571-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1125	chr12	70830420	70830421	rs434483	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	12q15	NR	rs434483-T	NR	6E-6	(AA)	0.338996	[0.19-0.49] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1126	chr12	70953368	70953369	rs113791087	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	12q15		rs113791087-?	NR	2E-8		0.0781342	[0.049-0.107] unit decrease	NR [9800000] (imputed)	N
1126	chr12	70954463	70954464	rs17108344	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	12q15	PTPRB	rs17108344-?		3E-8	(EA)	25.3	[NR]	Illumina [936149]	N
1126	chr12	71030213	71030214	rs2584020	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	12q15	NR	rs2584020-C	NR	7E-7	(AA)	0.118069	[0.071-0.165] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1127	chr12	71041227	71041230	rs35400816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q15		rs35400816-A	NR	1E-8		0.0299	[0.02-0.04] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1127	chr12	71098167	71098168	rs1513105	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	12q15		rs1513105-T	0.455348	1E-9		0.0400902	[0.026-0.054] decrease	Affymetrix [NR]	N
1127	chr12	71100446	71100447	rs12824973	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	12q15	PTPRR	rs12824973-G	0.901	1E-8		0.121	[0.08-0.162] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1127	chr12	71106647	71106648	rs10879184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q15	NR	rs10879184-T	NR	1E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr12	71106647	71106648	rs10879184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q15	NR	rs10879184-T	NR	1E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1127	chr12	71106647	71106648	rs10879184	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q15	PTPRR	rs10879184-C	0.503689	2E-8		0.0108668	[0.0071-0.0146] unit increase	Affymetrix [NR] (imputed)	N
1127	chr12	71110248	71110249	rs11178376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q15		rs11178376-A	NR	5E-10		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1127	chr12	71111606	71111607	rs11178377	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q15		rs11178377-?	NR	2E-6		0.2780124	[0.16-0.39] unit decrease	Illumina [9875426] (imputed)	N
1127	chr12	71113086	71113087	rs2137537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q15		rs2137537-C	NR	5E-29		0.0216	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1127	chr12	71113086	71113087	rs2137537	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q15	PTPRR	rs2137537-T	0.45	4E-27		10.8	z-score increase	Affymetrix [4314223] (imputed)	N
1127	chr12	71114399	71114400	rs7304603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q15	PTPRR	rs7304603-T	0.462314	2E-10		0.0126461	[0.0088-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1127	chr12	71123447	71123448	rs12813125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs12813125-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1127	chr12	71150657	71150658	rs11178393	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	12q15	PTPRR	rs11178393-T	0.89	3E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [8662096] (imputed)	N
1128	chr12	71210677	71210678	rs1040026	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	12q15	PTPRR	rs1040026-?	0.003704	4E-25		37.46	[36.38-38.54]	Affymetrix [547296]	N
1128	chr12	71210677	71210678	rs1040026	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	12q15	PTPRR	rs1040026-?	0.003704	3E-18		26.11	[8.945-76.19]	Affymetrix [547296]	N
1128	chr12	71233907	71233908	rs11178450	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q15	PTPRR, TSPAN8	rs11178450-?		5E-26				Affymetrix, Illumina [NR] (imputed)	N
1128	chr12	71249995	71249996	rs12229663	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	12q15	PTPRR	rs12229663-G	0.27	5E-9		0.099	[0.066-0.132] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1128	chr12	71255677	71255678	rs7297374	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q15	NR	rs7297374-T	0.7501	1E-8	(EA)	0.096	[0.063-0.129] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1128	chr12	71271432	71271433	rs61930374	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	12q15	NR	rs61930374-C	0.2	5E-7		1.09	unit decrease	Illumina [8591557] (imputed)	N
1128	chr12	71275136	71275137	rs11178469	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q15	PTPRR	rs11178469-T	0.7524	1E-13		7.403	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1128	chr12	71278181	71278182	rs10879211	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	12q15	NR	rs10879211-A	0.2659	6E-9		0.0881	[0.059-0.118] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1128	chr12	71289407	71289408	rs6581971	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q15	NR	rs6581971-T	0.842	5E-6		0.0209	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1128	chr12	71289555	71289556	rs4760854	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q15	NR	rs4760854-G	0.270106625167935	9E-6	(IGP11)	0.1574	[0.088-0.227] unit decrease	Illumina [~ 2500000] (imputed)	N
1129	chr12	71317695	71317696	rs11178492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q15		rs11178492-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1129	chr12	71372389	71372390	rs10748165	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q15	PTPRR	rs10748165-C	0.495848	2E-8		0.0110222	[0.0072-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1129	chr12	71387092	71387093	rs10784885	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	12q15	intergenic	rs10784885-T	0.48	3E-6	(female)	4.69	z score increase	Illumina [6380737] (imputed)	N
1129	chr12	71408075	71408076	rs10506621	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	12q15	NR	rs10506621-?		1E-6	(genus_Corynebacterium)	0.6708698	[0.42-0.93] unit decrease	Affymetrix [211319]	N
1129	chr12	71433292	71433293	rs7955901	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12q15	TSPAN8, LGR5	rs7955901-C	0.446519035882972	7E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1130	chr12	71439588	71439589	rs7138300	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q15	TSPAN8	rs7138300-C	0.44316503609743	6E-10		0.0443	[0.03-0.058] unit increase	NR [5035015] (imputed)	N
1130	chr12	71439588	71439589	rs7138300	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12q15	TSPAN8, LGR5	rs7138300-C	NR	2E-6	(men)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1130	chr12	71446788	71446789	rs4760786	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	12q15	PTPRR, TSPAN8	rs4760786-?	NR	9E-21		0.037	[0.029-0.044] unit increase	Illumina [12039491] (imputed)	N
1130	chr12	71449520	71449521	rs7313668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q15		rs7313668-T	NR	3E-8		0.0427	[0.028-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1130	chr12	71449520	71449521	rs7313668	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q15	TSPAN8, LGR5	rs7313668-T	0.374	5E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1130	chr12	71460853	71460853	rs149470925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q15		rs149470925-CCATAATAAGAATATGTAATTAA	NR	4E-8		0.0152	[0.0097-0.0207] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1130	chr12	71461829	71461830	rs7974748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q15		rs7974748-G	NR	4E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1130	chr12	71463767	71463768	rs10784894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q15		rs10784894-T	0.386076	3E-8		0.0153465	[0.0099-0.0208] unit decrease	Illumina [13479924] (imputed)	N
1130	chr12	71478625	71478626	rs1707498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q15		rs1707498-A	NR	1E-15		0.0499	[0.038-0.062] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1130	chr12	71499373	71499374	rs11178610	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.1	NR	rs11178610-?	NR	2E-10				Affymetrix [NR]	N
1130	chr12	71520760	71520761	rs10879261	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q21.1	NR	rs10879261-G	0.388	7E-19		0.0341	[0.027-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1130	chr12	71522952	71522953	rs1796330	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q21.1	TSPAN8, LGR5	rs1796330-G	0.5711	2E-14		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1130	chr12	71523042	71523043	rs1705263	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q21.1	NR	rs1705263-C	0.5688	1E-17		0.0398	[0.031-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1130	chr12	71523133	71523134	rs1051334	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q21.1	TSPAN8	rs1051334-A	0.6	2E-12				NR [> 9500000] (imputed)	N
1130	chr12	71523731	71523731	rs35715058	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q21.1	NR	rs35715058-CTT	0.635552	1E-8		0.00479498	[0.0031-0.0065] unit increase	Affymetrix [16582909] (imputed)	N
1130	chr12	71523731	71523731	rs35715058	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q21.1	NR	rs35715058-CTT	0.635552	2E-7		0.00500967	[0.0031-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1130	chr12	71526413	71526414	rs2270588	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	12q21.1	TSPAN8	rs2270588-C	0.46	2E-6	(recessive)	0.12	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
1130	chr12	71533209	71533210	rs11178648	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q21.1	TSPAN8, PTPRR, LGR5	rs11178648-C	0.592	4E-8		1.087	[1.055-1.120]	Affymetrix [10894596] (imputed)	N
1130	chr12	71533209	71533210	rs11178648	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	12q21.1	TSPAN8, PTPRR, LGR5	rs11178648-C	0.592	7E-7		1.052	[1.031-1.073]	Affymetrix [10894596] (imputed)	N
1130	chr12	71533237	71533238	rs11178649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	12q21.1		rs11178649-T	NR	4E-8		0.0391	[0.025-0.053] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1130	chr12	71533237	71533238	rs11178649	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	12q21.1	TSPAN8	rs11178649-T	0.407175786367131	1E-10		0.04292547	[0.03-0.056] unit decrease	Affymetrix [35186738] (imputed)	N
1130	chr12	71533237	71533238	rs11178649	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q21.1	TSPAN8	rs11178649-G	0.601967	2E-9		1.037402	[1.02499484869509-1.04995944088449]	NR [9572556] (imputed)	N
1130	chr12	71533237	71533238	rs11178649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	12q21.1		rs11178649-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1130	chr12	71550048	71550049	rs370422495	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	12q21.1	NR	rs370422495-?	NR	8E-6		0.00393	[0.0022-0.0056] unit decrease	Affymetrix [9658292] (imputed)	N
1131	chr12	71577100	71577101	rs1495377	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	12q21.1	NR	rs1495377-?	NR	2E-6				Affymetrix [287554]	N
1131	chr12	71577100	71577101	rs1495377	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	12q21.1	NR	rs1495377-G	0.50	7E-6		1.28	[1.11-1.49]	Affymetrix [469557]	N
1131	chr12	71585742	71585743	rs17226898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	12q21.1		rs17226898-C	NR	1E-8		0.0494	[0.033-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1131	chr12	71585742	71585743	rs17226898	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	12q21.1	TSPAN8	rs17226898-C	0.381266	2E-8		0.05278784	[0.034-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1131	chr12	71634793	71634794	rs4760790	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q21.1	LGR5, TSPAN8	rs4760790-A		4E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [2426886] (imputed)	N
1131	chr12	71650778	71650779	rs184699315	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.1	TSPAN8	rs184699315-T	0.999	4E-6	(AA)	0.478	unit increase	Illumina [NR] (imputed)	N
1131	chr12	71663101	71663102	rs7961581	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q21.1	TSPAN8	rs7961581-T	0.7018	7E-6		0.048	[0.026-0.07] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1131	chr12	71663101	71663102	rs7961581	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	12q21.1	LGR5, TSPAN8	rs7961581-C	0.27	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [2202892] (imputed)	N
1132	chr12	71720401	71720402	rs11178737	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q21.1	NR	rs11178737-T	0.0928669	9E-13		0.0378249	[0.027-0.048] unit increase	NR [19129689] (imputed)	N
1134	chr12	71999093	71999094	rs1149003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q21.1	ZFC3H1	rs1149003-C	0.368327	7E-9	(70 ms)	0.0339842	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1134	chr12	71999093	71999094	rs1149003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q21.1	ZFC3H1	rs1149003-C	0.368327	4E-9	(68 ms)	0.0342411	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1134	chr12	72026372	72026373	rs139369546	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.1	NR	rs139369546-?	NR	4E-6		4.587	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1134	chr12	72071044	72071045	rs10748180	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	12q21.1	THAP2	rs10748180-G	NR	5E-6		0.123	[0.070-0.176] unit decrease	Illumina [628922]	N
1134	chr12	72080271	72080272	rs2304269	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q21.1	TMEM19	rs2304269-A	0.56	1E-12		1.2345679	[NR]	Illumina [803202]	N
1135	chr12	72125284	72125285	rs11178918	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	12q21.1	intergenic	rs11178918-G	NR	8E-6		0.184	[0.1-0.26] unit decrease	Illumina [628922]	N
1135	chr12	72179445	72179446	rs61754230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q21.1		rs61754230-T	NR	1E-10		0.0521	[0.036-0.068] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q21.1	NR	rs61754230-T	NR	2E-12		0.0611	[0.044-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q21.1	NR	rs61754230-T	NR	2E-13		0.0639	[0.047-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q21.1	NR	rs61754230-T	NR	4E-11		0.0572	[0.04-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q21.1	NR	rs61754230-T	NR	1E-12		0.0617	[0.045-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q21.1	RAB21	rs61754230-C	0.980265	3E-8		0.0273798	[0.018-0.037] unit decrease	Affymetrix [12370749]	N
1135	chr12	72179445	72179446	rs61754230	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q21.1	RAB21	rs61754230-C	0.980217	1E-8		0.0427126	[0.028-0.057] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q21.1	RAB21	rs61754230-C	0.980214	1E-8		0.0427783	[0.028-0.057] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q21.1	RAB21	rs61754230-?	NR	4E-15		0.0717	[0.056-0.088] unit increase	Affymetrix [5701386] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.1	NR	rs61754230-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q21.1		rs61754230-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.1		rs61754230-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q21.1	NA	rs61754230-T	0.0189	1E-10		0.0451	[0.031-0.059] unit increase	NR [~ 27400000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.1	RAB21	rs61754230-T	NR	5E-8		5.462	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1135	chr12	72179445	72179446	rs61754230	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q21.1	RAB21	rs61754230-T	0.0174	1E-9		0.04	[0.026-0.054] unit increase	Illumina [246328]	N
1135	chr12	72179445	72179446	rs61754230	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	12q21.1	NR	rs61754230-T	NR	4E-12		0.051481925	[0.037-0.066] unit increase	Illumina [242289]	N
1135	chr12	72179445	72179446	rs61754230	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	12q21.1	NR	rs61754230-T	0.018	1E-7		0.062	unit increase	Illumina [242289]	N
1135	chr12	72197573	72197574	rs328733	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	HDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	12q21.1	RAB21	rs328733-T	0.788	6E-7		4.7	NR z score decrease	Affymetrix [659492]	N
1135	chr12	72199959	72199960	rs328731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.1	TBC1D15	rs328731-?	NR	7E-7	(proline)	0.3284148	[0.2-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1136	chr12	72260075	72260076	rs12310865	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.1	TBC1D15	rs12310865-?		5E-6				Illumina [4322238] (imputed)	N
1136	chr12	72343286	72343287	rs11179003	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	12q21.1	TPH2	rs11179003-T	NR	9E-7		4.92	[NR] unit increase	Illumina [632375]	N
1137	chr12	72425009	72425010	rs17110741	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TPH2	rs17110741-?	NR	3E-17	(male)	5.17736	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1139	chr12	72617858	72617859	rs11179118	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q21.1	NR	rs11179118-?	NR	2E-6		0.3063	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1139	chr12	72627667	72627668	rs545906289	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q21.1	NR	rs545906289-?	NR	7E-6		1.56575	[0.88-2.25] unit increase	NR [13958389] (imputed)	N
1139	chr12	72648498	72648499	rs59211589	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q21.1	NR	rs59211589-C	0.161636997429959	2E-10		0.007893923	[0.0054-0.0103] unit decrease	NR [NR]	N
1139	chr12	72648498	72648499	rs59211589	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q21.1	NR	rs59211589-C	0.161636997429959	2E-10		0.01256402	[0.0087-0.0164] unit decrease	NR [NR]	N
1139	chr12	72648498	72648499	rs59211589	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q21.1	NR	rs59211589-C	0.161636997429959	2E-10		0.008027134	[0.0055-0.0105] unit decrease	NR [NR]	N
1139	chr12	72672822	72672823	rs4584622	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q21.1	TRHDE	rs4584622-T	0.702	2E-34	(Small integral membrane protein 9, SMIM9.8888.33.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
1139	chr12	72692966	72692967	rs11179146	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q21.1	NR	rs11179146-A	0.691	1E-7		0.00623464	[0.0039-0.0085] unit increase	NR [9732723] (imputed)	N
1139	chr12	72698279	72698280	rs17782464	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q21.1	NR	rs17782464-G	0.156482506870981	3E-10		0.00976138	[0.0067-0.0128] unit decrease	NR [NR]	N
1139	chr12	72698279	72698280	rs17782464	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12q21.1	NR	rs17782464-G	0.156482506870981	7E-10		0.010372678	[0.0071-0.0137] unit decrease	NR [NR]	N
1139	chr12	72724033	72724034	rs12831974	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	12q21.1	TRHDE	rs12831974-?		6E-6		1.27	[1.14-1.40]	Illumina [441398]	N
1139	chr12	72735822	72735823	rs4760831	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q21.1		rs4760831-A	0.509	8E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1139	chr12	72735822	72735823	rs4760831	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q21.1	NR	rs4760831-T	0.478	5E-8		0.00589287	[0.0038-0.008] unit decrease	NR [9732723] (imputed)	N
1139	chr12	72736309	72736310	rs12828944	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q21.1	TRHDE	rs12828944-A	0.434	7E-11		0.0078	[0.0054-0.0102] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1140	chr12	72822204	72822205	rs10784970	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	12q21.1	TRHDE	rs10784970-A	0.7544	1E-6		0.0085	[0.005-0.012] unit increase	Affymetrix [~ 7740000] (imputed)	N
1142	chr12	73044621	73044622	rs12370001	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	12q21.1	TRHDE	rs12370001-?	NR	8E-6	(Female, Puberty)	0.204	[0.114-0.294] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1142	chr12	73047636	73047637	rs11179306	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	12q21.1	intergenic	rs11179306-C	0.924	3E-6	(AA)	0.821	unit decrease	Illumina [at least 5086170] (imputed)	N
1142	chr12	73069562	73069563	rs11179317	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.1	NR	rs11179317-?	NR	2E-9				Affymetrix [NR]	N
1143	chr12	73163150	73163151	rs10879490	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	12q21.1	TRHDE	rs10879490-A		9E-6		0.14	[0.08-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
1144	chr12	73307581	73307582	rs10879517	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	12q21.1	AC131213.4	rs10879517-?	NR	4E-6	(TrailsA)			Illumina [up to 563855]	N
1144	chr12	73395068	73395069	rs12319493	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	12q21.1	NR	rs12319493-T	0.23799	4E-6		0.7028829	[0.42-0.98] unit decrease	Illumina [at least 621854] (imputed)	N
1145	chr12	73402018	73402019	rs137970858	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Reflection (response to stress)	1,758 European ancestry individuals	NA	12q21.1	intergenic	rs137970858-C	NR	1E-6		0.4151	NR unit increase	Illumina [3474641] (imputed)	N
1145	chr12	73450316	73450317	rs10506710	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	12q21.1	intergenic	rs10506710-?	NR	3E-6	(Female, Pre-puberty)	0.098	[0.056-0.139] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1145	chr12	73510344	73510345	rs60148685	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	12q21.1	NR	rs60148685-?	0.4437	8E-6		34.0	[19-48] unit increase	NR [9714326] (imputed)	N
1146	chr12	73537772	73537773	rs61369249	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalitalea cylindroides abundance in stool	5,959 Finnish ancestry individuals	NA	12q21.1		rs61369249-G	0.0540609	5E-8		0.111362	[0.071-0.151] unit increase	Illumina [7980478] (imputed)	N
1146	chr12	73601131	73601132	rs11615274	22417934	Athanasiu L	2012-03-12	Psychiatry Res	Genome-wide association study identifies genetic loci associated with body mass index and high density lipoprotein-cholesterol levels during psychopharmacological treatment - a cross-sectional naturalistic study.	Body mass index and cholesterol (psychopharmacological treatment)	283 European ancestry schizophrenia cases, 213 European ancestry bipolar disorder cases, 98 European ancestry psychosis cases	NA	12q21.1	intergenic	rs11615274-?	NR	9E-8	(HDL-C)		[NR]	Affymetrix [608239]	N
1148	chr12	73828955	73828956	rs7963521	20237162	Bozaoglu K	2010-03-17	J Clin Endocrinol Metab	Chemerin, a novel adipokine in the regulation of angiogenesis.	Chemerin levels	858 Mexican American family members and individuals	NA	12q21.1	TRHDE	rs7963521-?	NR	9E-6				Illumina [542944]	N
1149	chr12	73969963	73969964	rs117523921	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	12q21.1	NR	rs117523921-A	0.9729	6E-6		0.5011	[0.28-0.72] unit decrease	Illumina [NR] (imputed)	N
1149	chr12	73989836	73989837	rs1154865	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	12q21.1	intergenic	rs1154865-?	NR	7E-7				Affymetrix [70897]	N
1150	chr12	74081158	74081159	rs76192797	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Reflection (response to stress)	1,758 European ancestry individuals	NA	12q21.1	intergenic	rs76192797-C	NR	2E-6		0.2195	NR unit increase	Illumina [3474641] (imputed)	N
1150	chr12	74087807	74087808	rs7964120	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.1	RPL31P48	rs7964120-A	0.317	5E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1150	chr12	74152401	74152402	rs10879676	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.1		rs10879676-T	0.5833	5E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1150	chr12	74152401	74152402	rs10879676	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.1	Intergenic	rs10879676-T	0.5833	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr12	74166665	74166666	rs12303122	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q21.1	Intergenic	rs12303122-A	0.3452	1E-8	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1151	chr12	74203593	74203594	rs117647497	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q21.1	intergenic	rs117647497-G	0.0117131863619599	2E-6	(G_Bifidobacterium_HB)	1.2967	[0.77-1.83] unit decrease	Illumina [7711310] (imputed)	N
1151	chr12	74309748	74309749	rs993845	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q21.1	NR	rs993845-T	0.404571891411138	3E-9		0.00922402	[0.0062-0.0123] unit decrease	NR [NR]	N
1151	chr12	74309748	74309749	rs993845	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q21.1	NR	rs993845-T	0.404571891411138	3E-9		0.005841095	[0.0039-0.0078] unit decrease	NR [NR]	N
1152	chr12	74321122	74321123	rs11179838	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs11179838-?	NR	1E-9				NR [NR]	N
1152	chr12	74321819	74321820	rs10879708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q21.1		rs10879708-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1152	chr12	74335355	74335356	rs17828731	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs17828731-?	NR	2E-10				NR [NR]	N
1152	chr12	74335355	74335356	rs17828731	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs17828731-?	NR	1E-10				NR [NR]	N
1152	chr12	74335355	74335356	rs17828731	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs17828731-?	NR	2E-10				NR [NR]	N
1152	chr12	74335355	74335356	rs17828731	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs17828731-?	NR	5E-11				NR [NR]	N
1152	chr12	74335355	74335356	rs17828731	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	12q21.1	NR	rs17828731-?		1E-8				NR [11140414]	N
1152	chr12	74335355	74335356	rs17828731	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q21.1	NR	rs17828731-T	NR	1E-8		5.668	z score increase	Affymetrix [10847151] (imputed)	N
1152	chr12	74335355	74335356	rs17828731	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	12q21.1	NR	rs17828731-C	0.4455	3E-10		0.0176	[0.012-0.023] unit decrease	Illumina [NR] (imputed)	N
1152	chr12	74335355	74335356	rs17828731	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	12q21.1	NR	rs17828731-C	0.4455	2E-7		0.0182	[0.011-0.025] unit decrease	Illumina [NR] (imputed)	N
1152	chr12	74335355	74335356	rs17828731	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	12q21.1	NR	rs17828731-C	0.4544	3E-9		0.0126	[0.0085-0.0167] unit decrease	Illumina [NR] (imputed)	N
1152	chr12	74350463	74350464	rs938496	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q21.1	NR	rs938496-C	NR	1E-8		5.706	z score decrease	Affymetrix [10847151] (imputed)	N
1152	chr12	74365840	74365841	rs10879715	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q21.1	NR	rs10879715-A	0.5502103036518	9E-10		0.0056515266	[0.0038-0.0075] unit increase	NR [NR]	N
1152	chr12	74367282	74367283	rs932143	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs932143-?	NR	6E-10				NR [NR]	N
1152	chr12	74367282	74367283	rs932143	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q21.1	NR	rs932143-T	0.557	6E-7		0.017227348	[0.01-0.024] unit increase	Affymetrix [up to 6544775] (imputed)	N
1152	chr12	74422277	74422278	rs150360326	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	12q21.1	NR	rs150360326-A	0.9802	7E-6		0.5805	[0.33-0.83] unit decrease	Illumina [NR] (imputed)	N
1153	chr12	74471339	74471340	rs2303970	25948407	Kertai MD	2015-05-06	BMJ Open	Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.	Perioperative myocardial infarction in coronary artery bypass surgery	112 cases, 1,321 controls	113 European ancestry cases, 509 European ancestry controls	12q21.1	LOC552889, TRHDE	rs2303970-?	NR	9E-6		1.61	[1.32-2.00]	Illumina [534390]	N
1153	chr12	74484644	74484645	rs370536844	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	12q21.1		rs370536844-C	0.01069	8E-6		2.329	[1.607-3.376]	Affymetrix [7975321] (imputed)	N
1153	chr12	74489287	74489288	rs753044	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	12q21.1	NR	rs753044-?		1E-9				NR [520857]	N
1153	chr12	74496795	74496796	rs7309031	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	12q21.1	ATXN7L3B	rs7309031-C	NR	3E-8		1.04	[1.02-1.06]	Affymetrix [up to 49134253] (imputed)	N
1153	chr12	74501597	74501598	rs181745657	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	12q21.1		rs181745657-C	NR	1E-6		2.94		Illumina [7574753] (imputed)	N
1153	chr12	74534798	74534799	rs183722597	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC090502.1	rs183722597-?	NR	3E-11	(female)	0.412554	[NR] unit increase	Affymetrix [NR] (imputed)	N
1153	chr12	74561171	74561172	rs7305553	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	12q21.1		rs7305553-T	0.01492	2E-6		1.998	[1.498-2.663]	Affymetrix [7975321] (imputed)	N
1154	chr12	74586209	74586210	rs10506701	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	12q21.1	intergenic	rs10506701-?	NR	1E-6	(TRBMD)			Affymetrix [70897]	N
1154	chr12	74633650	74633651	rs4883487	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	12q21.1	RPL31P48, VENTXP3	rs4883487-C	0.41	7E-7		0.45	[0.27-0.63] unit decrease	Illumina [8252679] (imputed)	N
1154	chr12	74669966	74669967	rs181181503	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	12q21.1	NR	rs181181503-C	NR	3E-7				Illumina [10806625] (imputed)	N
1155	chr12	74732023	74732024	rs7486169	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	12q21.1	LOC100507377, ATXN7L3B	rs7486169-G	0.108	2E-6		1.07	[1.12-15.22]	Affymetrix [up to 27494467] (imputed)	N
1155	chr12	74761651	74761652	rs1030415	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	866 European and unknown ancestry individuals	NA	12q21.1	NR	rs1030415-?	NR	1E-6		0.1	[0.06-0.15] unit increase	Illumina [> 2600000] (imputed)	N
1155	chr12	74770762	74770763	rs180977857	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q21.1	intergenic	rs180977857-T	0.0114153123394514	5E-6	(G_Bifidobacterium_HB)	1.36708	[0.78-1.96] unit decrease	Illumina [7711310] (imputed)	N
1155	chr12	74813691	74813692	rs78450575	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q21.1		rs78450575-?	NR	8E-6		0.5446458	[0.31-0.78] unit increase	Illumina [9842460] (imputed)	N
1156	chr12	74896258	74896259	rs78592582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q21.1		rs78592582-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1156	chr12	74913195	74913196	rs11180096	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	12q21.1	NR	rs11180096-C	0.02639	2E-6		0.449	[0.26-0.63] unit increase	Illumina [10677593] (imputed)	N
1156	chr12	74936525	74936526	rs17113730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.1		rs17113730-A	0.0717	4E-10		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1156	chr12	74936525	74936526	rs17113730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.1	Intergenic	rs17113730-A	0.0717	1E-8	(MTAG)	0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr12	74940417	74940418	rs75503803	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	12q21.1	NR	rs75503803-T	0.125	1E-9		0.0140337	[0.0095-0.0186] unit decrease	NR [9732723] (imputed)	N
1156	chr12	74963180	74963181	rs10785131	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	12q21.1	NR	rs10785131-T	0.167	7E-9		0.0170535	[0.011-0.023] unit decrease	NR [9732723] (imputed)	N
1157	chr12	75054592	75054593	rs7311660	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.1	LOC387869	rs7311660-G	0.397	4E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1158	chr12	75122123	75122124	rs7132280	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.1	NR	rs7132280-?	NR	8E-13				Affymetrix [NR]	N
1158	chr12	75204105	75204106	rs7314700	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs7314700-?	NR	4E-8				NR [NR]	N
1159	chr12	75246980	75246981	rs4471510	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q21.1	Intergenic	rs4471510-?	NR	3E-6		1.388	[NR]	Affymetrix [492217] (imputed)	N
1159	chr12	75263192	75263193	rs7134009	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q21.1	NR	rs7134009-C	0.287	4E-8		0.015796907	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1159	chr12	75265428	75265429	rs77092580	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	12q21.1	RP11-361A23.3	rs77092580-G	NR	1E-6		0.919	[0.888- 0.950]	Illumina [6740241] (imputed)	N
1159	chr12	75324236	75324237	rs11180290	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q21.1	intergenic	rs11180290-T	NR	8E-6		0.29622838	[0.16-0.44] unit decrease	Illumina [> 6200000] (imputed)	N
1159	chr12	75360681	75360682	rs76982571	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q21.1	NR	rs76982571-?	NR	3E-8				Illumina [7760689] (imputed)	N
1160	chr12	75366734	75366735	rs10506682	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q21.1	Intergenic	rs10506682-?	NR	4E-7		1.554	[NR]	Affymetrix [492217] (imputed)	N
1160	chr12	75380510	75380511	rs10879871	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	12q21.1		rs10879871-T	0.343	5E-11		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1160	chr12	75380510	75380511	rs10879871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q21.1	NR	rs10879871-G	0.647	2E-12		0.00795851	[0.0057-0.0102] unit increase	NR [9732723] (imputed)	N
1160	chr12	75380510	75380511	rs10879871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	12q21.1	NR	rs10879871-G	0.653	1E-9		0.00977421	[0.0066-0.0129] unit increase	NR [9732723] (imputed)	N
1160	chr12	75424550	75424551	rs117559199	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	12q21.1		rs117559199-?	NR	4E-6		0.04	[-0.06--0.03] unit decrease	Illumina [7066534] (imputed)	N
1160	chr12	75435768	75435769	rs11180340	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.1	NR	rs11180340-?	NR	4E-8				Affymetrix [NR]	N
1160	chr12	75439486	75439487	rs10506677	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q21.1		rs10506677-G	0.84	3E-10		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1160	chr12	75493881	75493882	rs1379963	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs1379963-?	NR	5E-8				NR [NR]	N
1160	chr12	75496462	75496463	rs11613919	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q21.1	NR	rs11613919-T	0.801	2E-6		0.020623213	[0.012-0.029] unit increase	Affymetrix [up to 6544775] (imputed)	N
1160	chr12	75496798	75496799	rs11611374	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.1		rs11611374-?	NR	5E-8				NR [NR]	N
1161	chr12	75508938	75508939	rs147609775	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	12q21.1	KCNC2	rs147609775-T	0.9744	2E-7		0.2104	[0.13-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1161	chr12	75513771	75513772	rs12424549	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.1	NR	rs12424549-?	NR	6E-7		4.977	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1161	chr12	75548465	75548466	rs936414	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	12q21.1		rs936414-?	NR	4E-8				NR [7857346] (imputed)	N
1161	chr12	75548465	75548466	rs936414	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q21.1	KCNC2	rs936414-?	NR	5E-8		0.0096594	[0.0062-0.0131] unit increase	Affymetrix [805426] (imputed)	N
1161	chr12	75549400	75549401	rs12301672	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q21.1	Intergenic	rs12301672-?	NR	8E-6		1.395	[NR]	Affymetrix [492217] (imputed)	N
1161	chr12	75574322	75574323	rs186586221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.1	KCNC2	rs186586221-C	0.999	1E-6	(AA)	0.332	unit increase	Illumina [NR] (imputed)	N
1161	chr12	75598314	75598315	rs74402682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.1	NR	rs74402682-G	0.01045	2E-14	(IGHG2)	2.267	NR unit increase	Illumina [1671387] (imputed)	N
1161	chr12	75598314	75598315	rs74402682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.1	NR	rs74402682-G	0.01045	1E-8	(SERPINF1)	0.02579	NR unit increase	Illumina [1671387] (imputed)	N
1162	chr12	75718422	75718423	rs12318506	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	12q21.2	CAPS2	rs12318506-T	0.18	8E-6	(AA)	0.21	[0.11-0.31] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1163	chr12	75775072	75775073	rs7294516	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CAPS2	rs7294516-?	NR	2E-8	(female)	1.48793	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1163	chr12	75787113	75787114	rs4460845	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GLIPR1L2	rs4460845-?	NR	2E-8	(female)	1.48773	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1163	chr12	75877340	75877341	rs10748279	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GLIPR1	rs10748279-?	NR	2E-8	(female)	1.48618	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1163	chr12	75885764	75885765	rs10785192	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12q21.2	NR	rs10785192-T	NR	2E-6	(LME model)	0.79444	[0.47-1.12] unit decrease	NR [NR] (imputed)	N
1164	chr12	75920284	75920285	rs11180559	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q21.2	KRR1, GLIPR1, GLIPR1L2, CAPS2	rs11180559-G	NR	8E-6	(daytime resting duration)	0.127	[0.071-0.183] unit increase	Affymetrix [7141204] (imputed)	N
1164	chr12	75935156	75935157	rs1275468	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	12q21.2	KRR1	rs1275468-C	0.75	2E-8		1.13	[1.08-1.18]	Illumina [~ 9000000] (imputed)	N
1164	chr12	75941041	75941042	rs1795379	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	12q21.2	KRR1	rs1795379-T	0.24	2E-9		0.1174	[0.079-0.156] unit decrease	Illumina [> 10000000] (imputed)	N
1164	chr12	75968114	75968115	rs117148518	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q21.2	KRR1	rs117148518-C	0.0172601577772927	4E-6	(F_Sutterellaceae_HB)	1.67562	[0.97-2.39] unit decrease	Illumina [7711310] (imputed)	N
1165	chr12	76040391	76040392	rs11180609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q21.2		rs11180609-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1165	chr12	76040393	76040394	rs11180610	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	12q21.2	KRR1-PHLDA1	rs11180610-T	0.189	2E-6		1.19	[1.12-1.26]	Affymetrix, Illumina [8000000] (imputed)	N
1165	chr12	76064527	76064528	rs12582659	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	12q21.2	KRR1, PHLDA1	rs12582659-?	NR	3E-6		1.262	[0.73-1.79] unit increase	Illumina [> 2500000] (imputed)	N
1165	chr12	76104387	76104388	rs754474829	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q21.2	RP11-114H23.1	rs754474829-C	0.0011	2E-6		2.1105	[1.24-2.98] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1165	chr12	76114871	76114872	rs6582298	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	12q21.2	KRR1	rs6582298-G	0.6	3E-8		0.00514	[0.0033-0.007] unit increase	Affymetrix [at least 8002429] (imputed)	N
1165	chr12	76134256	76134257	rs1275572	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	12q21.2	RPL10P13	rs1275572-C	NR	8E-6		1.098	[1.057-1.139]	Illumina [6627481] (imputed)	N
1166	chr12	76157355	76157356	rs187293782	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q21.2	Intergenic	rs187293782-T	NR	7E-9	(between families)	5.78	unit increase	Affymetrix [up to 15107142] (imputed)	N
1166	chr12	76219593	76219594	rs17115753	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	12q21.2	PHLDA1	rs17115753-A	0.949	4E-6		0.796	[0.46-1.13] unit decrease	Illumina [6007542] (imputed)	N
1166	chr12	76220617	76220618	rs7307780	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q21.2	intergenic	rs7307780-?	0.19	5E-15	(Recessive)	1.45	[1.33-1.59]	Affymetrix [319222]	N
1166	chr12	76223816	76223817	rs11180703	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q21.2	KRR1, PHLDA1	rs11180703-G	0.56	4E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1166	chr12	76223816	76223817	rs11180703	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q21.2	KRR1, PHLDA1	rs11180703-G	0.54	8E-9	(EA)	1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1166	chr12	76235744	76235745	rs74328111	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.2	LOC105369846, PHLDA1	rs74328111-A	0.01	2E-9	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1166	chr12	76237986	76237987	rs12426679	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q21.2	PHLDA1	rs12426679-C	0.472	5E-9		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1166	chr12	76238854	76238855	rs1565765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q21.2		rs1565765-T	NR	3E-9		0.0568	[0.038-0.076] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1166	chr12	76242674	76242675	rs12230172	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	12q21.2	intergenic	rs12230172-G	0.54	8E-11		1.2345679	[1.16-1.32]	Illumina [at least 8427548] (imputed)	N
1166	chr12	76242674	76242675	rs12230172	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	12q21.2	intergenic	rs12230172-G	0.54	2E-6		1.1363636	[1.08-1.19]	Illumina [at least 8427548] (imputed)	N
1166	chr12	76263550	76263551	rs1275600	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	12q21.2	intergenic	rs1275600-T	0.595	4E-9		1.16	1.10-1.21	Illumina [at least 6769856] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q21.2		rs1275609-A	NR	4E-15		0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	12q21.2		rs1275609-A	0.594134	2E-12		0.0207695	[0.015-0.027] unit decrease	Illumina [13478778] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q21.2		rs1275609-A	NR	2E-14		0.0156	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	12q21.2		rs1275609-A	0.594091	4E-9		0.0205511	[0.014-0.027] unit decrease	Illumina [13478792] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q21.2	PHLDA1	rs1275609-A	0.3862	7E-17		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	12q21.2	PHLDA1	rs1275609-A	0.6043	4E-10		0.0046	[0.0032-0.006] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q21.2	PHLDA1	rs1275609-A	0.4278	2E-9		0.0046	[0.003-0.0062] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12q21.2	LOC105369844	rs1275609-G	0.5203	5E-10		6.209	NR z score decrease	Illumina [26237160] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	12q21.2	KRR1, PHLDA1	rs1275609-G	0.477	1E-8		0.258	[0.062-0.454] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12q21.2	KRR1, PHLDA1	rs1275609-?	NR	1E-11		0.02761	[0.02-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	12q21.2	KRR1, PHLDA1	rs1275609-?	NR	1E-12		0.02821	[0.02-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1166	chr12	76271182	76271183	rs1275609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	12q21.2	KRR1, PHLDA1	rs1275609-?	NR	6E-9		0.02257	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
1166	chr12	76272676	76272677	rs1690139	25234806	Dijkstra AE	2014-09-18	Eur Respir J	Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.	Chronic mucus hypersecretion	342 European ancestry cases, 1,006 European ancestry controls	130 European ancestry cases, 2,313 European ancestry controls	12q21.2	LOC100130336, LOC100131830	rs1690139-G	0.11	6E-6		1.67	[NR]	Illumina [522636]	N
1166	chr12	76283353	76283354	rs11180732	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	12q21.2	PHLDA1	rs11180732-T	0.31	6E-7	(EA)	0.0041	[0.0025-0.0057] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1167	chr12	76289296	76289297	rs114782882	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.2	NR	rs114782882-?	NR	5E-6		12.963	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1167	chr12	76293481	76293482	rs115146744	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.2	NR	rs115146744-?	NR	2E-6		14.053	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1167	chr12	76294738	76294739	rs149765481	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.2	NR	rs149765481-?	NR	7E-6		13.046	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1167	chr12	76355829	76355830	rs7965830	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.2	NR	rs7965830-?	NR	9E-7	(AA)	17.953959	[10.88-25.03] unit decrease	Affymetrix [at least 600000] (imputed)	N
1167	chr12	76384848	76384849	rs12814611	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	12q21.2	PHLDA1	rs12814611-?		6E-6		1.28	unit increase	Illumina [4751257] (imputed)	N
1168	chr12	76461258	76461258	rs3214625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q21.2		rs3214625-TA	NR	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1168	chr12	76465244	76465245	rs7294592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q21.2		rs7294592-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1168	chr12	76476955	76476956	rs1368578	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.2	NAP1L1	rs1368578-A	0.072	1E-6	(HRmax )	0.04	[NR] bpm increase	Illumina [899892]	N
1168	chr12	76487908	76487909	rs117780817	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Acidaminococcus fermentans abundance in stool	5,959 Finnish ancestry individuals	NA	12q21.2		rs117780817-G	0.0144744	3E-9		0.209511	[0.14-0.28] unit increase	Illumina [7980478] (imputed)	N
1169	chr12	76627444	76627445	rs11104268	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	12q21.2	intergenic	rs11104268-?		7E-6	(SG)	0.33	[0.17-0.49] unit increase	Illumina [693128]	N
1170	chr12	76678479	76678480	rs7132038	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.2	OSBPL8	rs7132038-?	NR	9E-6	(TAG 48:0)	0.22177309	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1170	chr12	76680359	76680360	rs11106529	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.2	OSBPL8	rs11106529-?	NR	1E-6	(TAG 46:0)	0.23647389	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
1170	chr12	76756494	76756495	rs4761331	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q21.2		rs4761331-C	0.53362	2E-6		0.031795	[0.019-0.045] unit decrease	Affymetrix [15580782] (imputed)	N
1171	chr12	76913994	76913995	rs35125747	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q21.2		rs35125747-A	0.46458	4E-6		0.030916	[0.018-0.044] unit increase	Affymetrix [15580782] (imputed)	N
1172	chr12	76981752	76981753	rs75084335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12q21.2	RP11-20E24.1	rs75084335-G	0.069169	4E-14		0.033507887	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1172	chr12	76981752	76981753	rs75084335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q21.2	RP11-20E24.1	rs75084335-G	0.069163	1E-15		0.035371605	[0.027-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1172	chr12	76981752	76981753	rs75084335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.2	NR	rs75084335-G	0.0674776	5E-10				Affymetrix, Illumina [19905671] (imputed)	N
1172	chr12	76981752	76981753	rs75084335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q21.2	NR	rs75084335-G	0.069244	4E-12		0.028439	[0.02-0.036] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1172	chr12	77009059	77009060	rs2669010	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	12q21.2	RPL7AP59	rs2669010-A	0.40	5E-6	(anti-dsDNA -)	1.28	[1.16-1.42]	Illumina [421318] (imputed)	N
1172	chr12	77028291	77028292	rs79727142	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q21.2	NR	rs79727142-?	NR	1E-7		4990.6104	NR unit decrease	Illumina [2379855]	N
1172	chr12	77054234	77054235	rs12817158	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.2	ZDHHC17	rs12817158-?	NR	3E-6	(TAG 48:4)	0.22814819	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1173	chr12	77133804	77133805	rs10862476	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q21.2	NR	rs10862476-G	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1173	chr12	77158868	77158869	rs73144876	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	12q21.2	ZDHHC17	rs73144876-A	NR	6E-6	(adjusted for total body fat)	0.252	[0.14-0.36] unit decrease	Illumina [8511049] (imputed)	N
1174	chr12	77289419	77289420	rs1691562	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	12q21.2	CSRP2	rs1691562-?	NR	2E-6		0.229	[0.13-0.32] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	12q21.2	NR	rs7302529-T	NR	7E-6				NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	12q21.2	CSRP2, E2F7	rs7302529-T	0.256	7E-7		0.1439	[0.087-0.201] unit increase	NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls	NA	12q21.2	NR	rs7302529-T	0.256	4E-6	(female)	0.0937	[0.054-0.134] unit increase	NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	12q21.2	NR	rs7302529-T	NR	9E-6				NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	12q21.2	CSRP2, E2F7	rs7302529-T	NR	2E-6			[NR]	NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	12q21.2	CSRP2, E2F7	rs7302529-T	0.2543	9E-7		0.1327	[0.08-0.186] unit increase	NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	12q21.2	CSRP2, E2F7	rs7302529-T	NR	2E-7		0.1448	[0.091-0.199] unit increase	NR [NR] (imputed)	N
1174	chr12	77321580	77321581	rs7302529	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	12q21.2	CSRP2, E2F7	rs7302529-T	NR	5E-6	(female)	0.0874	[0.05-0.125] unit increase	NR [NR] (imputed)	N
1175	chr12	77398720	77398721	rs17815608	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	12q21.2	NR	rs17815608-A	0.8276	3E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1175	chr12	77409968	77409969	rs78733170	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q21.2	E2F7	rs78733170-A	0.8449	3E-6		0.0425	[0.025-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1175	chr12	77419340	77419341	rs310831	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	12q21.2	E2F7	rs310831-?	0.116	6E-6				Illumina [308166]	N
1175	chr12	77427950	77427951	rs1565728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q21.2		rs1565728-T	0.326138	9E-10		0.017913	[0.012-0.024] unit increase	Illumina [13479924] (imputed)	N
1175	chr12	77429767	77429768	rs761806447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q21.2	NR	rs761806447-TA	0.8081119999999999	1E-9		0.00639293	[0.0043-0.0085] unit increase	Affymetrix [16582909] (imputed)	N
1175	chr12	77429767	77429768	rs761806447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q21.2	NR	rs761806447-TA	0.8081119999999999	6E-8		0.00621878	[0.0039-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
1175	chr12	77429768	77429768	rs60207407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q21.2		rs60207407-TA	NR	4E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1175	chr12	77435790	77435791	rs7314493	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	12q21.2	E2F7	rs7314493-A	0.76	5E-7		0.067	[0.042-0.092] unit decrease	Affymetrix [9740198] (imputed)	N
1175	chr12	77439822	77439823	rs61754233	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q21.2	E2F7	rs61754233-C	0.02	2E-10		0.0418	[0.029-0.055] unit increase	Affymetrix [18391927] (imputed)	N
1175	chr12	77439822	77439823	rs61754233	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12q21.2	E2F7	rs61754233-C	0.02	2E-6		0.04	[0.022-0.058] unit increase	Affymetrix [18391927] (imputed)	N
1175	chr12	77439822	77439823	rs61754233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.2		rs61754233-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1175	chr12	77443659	77443660	rs61932801	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	12q21.2	E2F7	rs61932801-C	0.737	9E-6	(Slope index)	0.1441	[0.081-0.207] unit increase	Affymetrix [8042262] (imputed)	N
1175	chr12	77447462	77447463	rs7976940	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q21.2	E2F7	rs7976940-A	0.9323	9E-14		0.0282	[0.021-0.036] unit increase	Affymetrix [18391927] (imputed)	N
1175	chr12	77453225	77453226	rs310796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q21.2		rs310796-T	NR	4E-21		0.0146	[0.012-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1175	chr12	77453225	77453226	rs310796	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q21.2	E2F7	rs310796-G	NR	2E-8		0.0184392	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1175	chr12	77453225	77453226	rs310796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.2		rs310796-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1175	chr12	77457438	77457439	rs374335	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q21.2	NR	rs374335-A	0.681214	3E-10		0.00610739	[0.0043-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
1175	chr12	77457438	77457439	rs374335	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q21.2	NR	rs374335-A	0.681214	8E-7		0.00524764	[0.0033-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
1176	chr12	77520189	77520190	rs7487338	29168253	Seielstad M	2017-11-22	Transfusion	Genomewide association study of HLA alloimmunization in previously pregnant blood donors.	Alloimmunization response to pregnancy (HLA class I)	up to 247 European ancestry alloantibody-positive previously pregnant cases, 753 European ancestry alloantibody-negative previously pregnant controls	NA	12q21.2	E2F7	rs7487338-?	NR	2E-7		2.44	[1.75-3.45]	Illumina [9427497] (imputed)	N
1176	chr12	77545428	77545429	rs771655	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	12q21.2		rs771655-A	NR	6E-6		1.13	[1.07-1.19]	Illumina [7105229] (imputed)	N
1177	chr12	77608049	77608050	rs9669571	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q21.2	E2F7, NAV3	rs9669571-?	NR	9E-9		0.022204312	[0.015-0.03] unit decrease	Illumina [27896057] (imputed)	N
1177	chr12	77609043	77609044	rs2176909	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	10,652 European, African American, Hispanic/Latino or East Asian ancestry female individuals	NA	12q21.2		rs2176909-T	NR	9E-8		0.498	[0.32-0.68] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
1177	chr12	77611217	77611218	rs10858543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q21.2		rs10858543-C	0.149	2E-9		0.0170195	[0.011-0.023] unit decrease	Illumina [13479295] (imputed)	N
1177	chr12	77647936	77647937	rs75973356	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA644 abundance in stool	5,959 Finnish ancestry individuals	NA	12q21.2		rs75973356-T	0.136709	4E-8		0.0892828	[0.057-0.121] unit increase	Illumina [7980478] (imputed)	N
1177	chr12	77647936	77647937	rs75973356	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA644 abundance in stool	5,959 Finnish ancestry individuals	NA	12q21.2		rs75973356-T	0.136709	4E-8		0.0861018	[0.055-0.117] unit increase	Illumina [7980478] (imputed)	N
1177	chr12	77648215	77648216	rs17043233	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Mean arterial pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	12q21.2	E2F7, ZDHHC17	rs17043233-T	NR	1E-11		4.26	[2.5-6.02] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1177	chr12	77648215	77648216	rs17043233	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Mean arterial pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	12q21.2	E2F7, ZDHHC17	rs17043233-T	0.02	2E-11	(African)	4.362	[2.5-6.23] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1177	chr12	77665093	77665094	rs1002107	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	12q21.2	E2F7	rs1002107-C	0.34090130548302877	2E-6	(AA)	0.3548	[0.21-0.5] unit increase	Illumina [at least 988306] (imputed)	N
1177	chr12	77676889	77676890	rs4338575	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	12q21.2	E2F7	rs4338575-C	0.3190177545691907	4E-6	(AA)	0.3418	[0.2-0.49] unit increase	Illumina [at least 988306] (imputed)	N
1177	chr12	77725203	77725204	rs184080173	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	12q21.2	NR	rs184080173-C		4E-7		0.2384	[0.15-0.33] SD units decrease	NR [10700000] (imputed)	N
1178	chr12	77729384	77729385	rs1402279	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	12q21.2	intergenic	rs1402279-?	0.95	5E-6	(EVNV)	1.51	[NR]	Illumina [~ 518000]	N
1178	chr12	77738004	77738005	rs6538140	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	12q21.2	E2F7	rs6538140-G	0.74	4E-6		4.3478	[NR]	Affymetrix [up to 4467279] (imputed)	N
1178	chr12	77742392	77742393	rs4471484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q21.2	RP1-34H18.1	rs4471484-T	NR	4E-10		0.0176915	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1178	chr12	77785572	77785573	rs77441887	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	12q21.2	NR	rs77441887-G		9E-6		0.2215	[0.12-0.32] SD units decrease	NR [10700000] (imputed)	N
1178	chr12	77836991	77836992	rs6538174	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	12q21.2	NR	rs6538174-G	0.2458	3E-6		0.1637	[0.095-0.232] unit decrease	Illumina [10677593] (imputed)	N
1178	chr12	77844453	77844454	rs6538182	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs6538182-A	0.38	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1178	chr12	77845973	77845974	rs67121530	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs67121530-T	0.39	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77856784	77856785	rs9668297	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs9668297-G	0.38	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77860206	77860207	rs35780879	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs35780879-T	0.38	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77860258	77860259	rs34691336	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs34691336-A	0.38	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77863516	77863517	rs4533086	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs4533086-G	0.39	4E-6		1.4492754	[-0.68712-3.58568]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77863988	77863989	rs116882211	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.2	NR	rs116882211-T	0.01045	2E-8	(SEPT11)	0.03883	NR unit decrease	Illumina [1671387] (imputed)	N
1179	chr12	77864739	77864740	rs11105336	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	12q21.2	NR	rs11105336-A	0.38	3E-6		1.4705882	[-0.66581-3.60699]	Affymetrix [at least 143006] (imputed)	N
1179	chr12	77897297	77897298	rs73425402	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion and depression	2,675 European ancestry responder cases, 191,986 European ancestry healthy controls	NA	12q21.2	E2F7, NAV3	rs73425402-?		1E-6		20.833332	[8.26-52.63]	Illumina [~ 12000000] (imputed)	N
1179	chr12	77899509	77899510	rs17788937	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		12q21.2	intergenic	rs17788937-?	0.786	4E-15			[NR]	Affymetrix, Illumina [152234]	N
1179	chr12	77901439	77901440	rs1725868	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.2	E2F7	rs1725868-?	NR	7E-6	(CE 14:0)	0.16197386	[0.092-0.232] unit increase	Affymetrix [at least 2500000] (imputed)	N
1179	chr12	77902317	77902318	rs10437868	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	12q21.2	NAV3	rs10437868-T	0.02	3E-8	(Leu)	0.79	[0.52-1.06] unit increase	Illumina [1288202] (imputed)	N
1179	chr12	77905206	77905207	rs711076	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12q21.2	NR	rs711076-T	0.6797	1E-11		0.0123	[0.0088-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1179	chr12	77909644	77909645	rs711082	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q21.2	NR	rs711082-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1179	chr12	77909714	77909715	rs771846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q21.2		rs771846-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1179	chr12	77927795	77927796	rs2695152	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 35)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q21.2		rs2695152-G	0.323161527	1E-8				Illumina [7417619] (imputed)	N
1179	chr12	77938888	77938889	rs7972555	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q21.2	NR	rs7972555-C	0.318	2E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
1179	chr12	77952682	77952683	rs12320526	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to levetiracetam in genetic generalized epilepsy	82 European ancestry responders, 127 European ancestry non-responders	NA	12q21.2	RP1-34H18.1	rs12320526-?	NR	2E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1179	chr12	77976558	77976559	rs711098	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q21.2	E2F7, NAV3	rs711098-A	0.3979	6E-9		1.0219371		Affymetrix [11880941] (imputed)	N
1180	chr12	78004571	78004572	rs711115	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q21.2		rs711115-G	0.36	8E-10		6.15	z score increase	Affymetrix [9061022] (imputed)	N
1180	chr12	78023776	78023777	rs698153	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12q21.2	NAV3	rs698153-A	0.95	5E-11		0.03	unit decrease	Affymetrix [8928767] (imputed)	N
1181	chr12	78216015	78216016	rs10160931	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 13)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q21.2		rs10160931-G	0.386839808	9E-14				Illumina [7417619] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q21.2		rs113825134-A	NR	3E-11		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q21.2	NAV3	rs113825134-A	0.233725	9E-14		0.01968966	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q21.2	NAV3	rs113825134-A	0.233727	5E-13		0.019120082	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.2	NR	rs113825134-A	0.186281	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q21.2	NR	rs113825134-A	0.234026	2E-15		0.017878	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1181	chr12	78220739	78220740	rs113825134	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q21.2	NAV3	rs113825134-A	0.2336	2E-9		0.02606521	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1181	chr12	78220931	78220932	rs2887623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.2		rs2887623-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1181	chr12	78221973	78221974	rs4761402	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.2		rs4761402-?	NR	5E-20		0.0194544	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1181	chr12	78222362	78222363	rs12811685	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.2	NAV3	rs12811685-C	0.65923	3E-19		0.017468	[0.014-0.021] unit increase	NR [13737936] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q21.2		rs1123680-G	0.22	3E-55		15.66	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q21.2		rs1123680-G	0.22	5E-22		9.66	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q21.2	NR	rs1123680-G	0.2379	1E-17				NR [9056863] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q21.2	GMNC	rs1123680-?		1E-8				NR [7428630] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q21.2	AC073528.1, NAV3	rs1123680-?		2E-9				NR [7428630] (imputed)	N
1181	chr12	78241284	78241285	rs1123680	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q21.2	NR	rs1123680-A	0.7603	4E-10	(Isthmus Cingulate)	5.2804985	[3.63-6.94] unit decrease	Affymetrix, Illumina [NR]	N
1182	chr12	78258578	78258579	rs770161	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	12q21.2		rs770161-?	NR	7E-20				NR [9705931] (imputed)	N
1182	chr12	78288586	78288587	rs2045989	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	12q21.2		rs2045989-?	NR	4E-6		0.243	[0.14-0.34] unit increase	Illumina [5082878] (imputed)	N
1182	chr12	78288810	78288811	rs2619062	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q21.2	NR	rs2619062-C	0.4228	4E-10				NR [9056863] (imputed)	N
1182	chr12	78298458	78298459	rs10777559	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	12q21.2	NAV3	rs10777559-?	0.25	3E-8		26.21	unit decrease	Illumina [120975] (imputed)	N
1182	chr12	78337935	78337936	rs1677894	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	12q21.2	NR	rs1677894-G	NR	9E-6	(additive)	1.44	1.22-1.70	Affymetrix [NR]	N
1182	chr12	78338385	78338386	rs1677893	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	12q21.2	NAV3	rs1677893-A	0.4463619999999999	1E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1182	chr12	78338385	78338386	rs1677893	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	12q21.2	NAV3	rs1677893-A	0.45	3E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1182	chr12	78364779	78364780	rs11107616	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	12q21.2	NAV3	rs11107616-C	NR	1E-6	(additive )	1.38	[1.21-1.57]	Affymetrix [NR]	N
1182	chr12	78376400	78376401	rs12427098	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q21.2		rs12427098-A	0.27736	9E-7		0.036798	[0.022-0.051] unit increase	Affymetrix [15580782] (imputed)	N
1183	chr12	78382596	78382597	rs79302569	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q21.2		rs79302569-?	NR	3E-7		1.1470746	[1.08870762846632-1.20857077595607]	Illumina [up to 7827597] (imputed)	N
1183	chr12	78408769	78408770	rs1479010	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	12q21.2	NAV3	rs1479010-T	0.4216	1E-8		2.327	[2.03-2.63]	Illumina [281811]	N
1183	chr12	78412645	78412646	rs2619054	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	12q21.2	NAV3	rs2619054-C	0.4674	4E-6		0.1196	[0.069-0.171] unit increase	NR [NR] (imputed)	N
1183	chr12	78485993	78485994	rs300489	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	12q21.2	NAV3	rs300489-A	0.23	5E-6		0.03	[NR] unit increase	Illumina [2380486] (imputed)	N
1184	chr12	78521907	78521908	rs2045580	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q21.2	LYPD6B	rs2045580-?		5E-8				NR [7428630] (imputed)	N
1184	chr12	78532858	78532859	rs77968610	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	12q21.2	NAV3	rs77968610-T	0.88	3E-8		0.95	[NR]	NR [8546065] (imputed)	N
1184	chr12	78554609	78554610	rs370245	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12q21.2	NAV3	rs370245-?	NR	2E-6		0.136	[0.058-0.214] unit increase	Illumina [at least 13000000] (imputed)	N
1184	chr12	78629916	78629917	rs57661533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.2		rs57661533-T	0.1341	3E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1185	chr12	78663466	78663467	rs795943	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	12q21.2	intergenic	rs795943-G		3E-6		1.697793	[NR]	Affymetrix [NR]	N
1185	chr12	78748013	78748014	rs10860332	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	12q21.2	NAV3	rs10860332-A	0.414	4E-8	(EA)	0.011	[0.0071-0.0149] unit increase	NR [12082474] (imputed)	N
1185	chr12	78761425	78761426	rs7295312	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.2	NR	rs7295312-?		1E-7				Illumina [4322238] (imputed)	N
1185	chr12	78772438	78772439	rs148621641	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	12q21.2	intergenic	rs148621641-A		4E-6		425.19	[243.93-606.45] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1185	chr12	78773250	78773251	rs12581220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q21.2		rs12581220-T	NR	3E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1185	chr12	78773250	78773251	rs12581220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q21.2	NR	rs12581220-T	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1185	chr12	78773250	78773251	rs12581220	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q21.2	NR	rs12581220-T	0.32	2E-12		0.0139	[0.01-0.0178] unit decrease	NR [NR]	N
1185	chr12	78773250	78773251	rs12581220	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	12q21.2	LINC02424	rs12581220-C	0.685554	1E-14	(EA)	0.01034	[0.0077-0.013] unit increase	Affymetrix [~ 8800000] (imputed)	N
1186	chr12	78810732	78810733	rs12316443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q21.2	NR	rs12316443-A	NR	2E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1186	chr12	78811780	78811781	rs11109717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q21.2		rs11109717-C	NR	2E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1186	chr12	78831609	78831610	rs7310889	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	12q21.2	NR	rs7310889-G	0.331	7E-6	(Males)	0.226679	[0.13-0.32] unit decrease	Illumina [~ 6600000] (imputed)	N
1186	chr12	78842068	78842069	rs11109811	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	12q21.2	NAV3, SYT1	rs11109811-?	NR	7E-10		0.03808	[0.026-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1186	chr12	78842893	78842894	rs11109815	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	12q21.2	NAV3, SYT1	rs11109815-?	NR	2E-9		0.03809	[0.026-0.05] unit decrease	Illumina [6108953] (imputed)	N
1186	chr12	78847258	78847259	rs982422	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	12q21.2	intergenic	rs982422-A	0.24	5E-7		0.47	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
1187	chr12	78918440	78918441	rs11110253	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	12q21.2	RP11-171L9.1	rs11110253-A	0.8255	4E-6		1.5641	[1.37-1.75]	Illumina [10736316] (imputed)	N
1187	chr12	78948533	78948534	rs10860592	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	12q21.2	RP11-171L9.1	rs10860592-T	0.19	3E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
1187	chr12	78980664	78980665	rs117388573	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	12q21.2	SYT1	rs117388573-G	NR	1E-9	(LPC(14:0;0))	0.7671	[0.52-1.01] unit decrease	Illumina [~ 9300000] (imputed)	N
1188	chr12	79157552	79157553	rs73343765	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	12q21.2	SYT1	rs73343765-A	0.0031	2E-6		0.327	[0.19-0.47] unit increase	Affymetrix, Illumina [26195808] (imputed)	N
1189	chr12	79201072	79201073	rs4842407	28388302	Petros Z	2017-04-01	OMICS	Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs.	Liver injury in combined anti-retroviral and anti-tuberculosis drug-treated HIV with tuberculosis	27 Ethiopian cases with HIV and tuberculosis, 159 Ethiopian controls with HIV and tuberculosis.	8 Ethiopian cases with HIV and tuberculosis, up to 108 Ethiopian controls with HIV and tuberculosis.	12q21.2	LOC642550	rs4842407-C	0.44	3E-7		5.4	[2.8-10.3]	Illumina [662807]	N
1190	chr12	79305653	79305654	rs9989048	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	12q21.2	SYT1	rs9989048-T	0.278	2E-7		0.165	[NR] unit increase	Illumina [625127]	N
1190	chr12	79402616	79402617	rs17206242	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	12q21.2	SYT1	rs17206242-T	0.1712	6E-6	(FVC)	0.3168	NR unit decrease	Affymetrix [305158]	N
1191	chr12	79526914	79526915	rs10746056	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.2	NR	rs10746056-?	NR	3E-6		4.646	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1191	chr12	79529200	79529201	rs4842438	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	12q21.2	SYT1	rs4842438-C	0.93	4E-8		1.04	[0.67-1.41] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
1191	chr12	79539758	79539759	rs113641325	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	12q21.2	NR	rs113641325-C	0.126	6E-6		1.98	[1.47-2.67]	Illumina [7261187] (imputed)	N
1192	chr12	79584217	79584218	rs1918202	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q21.2	SYT1	rs1918202-A	NR	2E-11		0.020885723	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1192	chr12	79592679	79592680	rs6539284	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q21.2	SYT1	rs6539284-T	0.5863	2E-10		0.1279	[0.088-0.167] mmHg increase	Affymetrix [NR] (imputed)	N
1192	chr12	79592679	79592680	rs6539284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q21.2	Intergenic	rs6539284-T	0.5963	2E-13	(MTAG)	0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr12	79592679	79592680	rs6539284	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q21.2	NR	rs6539284-T	NR	6E-12		6.89	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1192	chr12	79648169	79648170	rs1245829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.2		rs1245829-A	0.5814	3E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1192	chr12	79648169	79648170	rs1245829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.2	Intergenic	rs1245829-A	0.5814	5E-16	(MTAG)	0.0108	[0.0083-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr12	79659039	79659040	rs6539344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q21.2		rs6539344-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	12q21.2	NR	rs7963801-T	0.419483	7E-15		0.049791746	[0.037-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q21.2	SYT1	rs7963801-T	0.4149	2E-15		0.2027	[0.15-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q21.2	Intergenic	rs7963801-T	0.4015	8E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q21.2	Intergenic	rs7963801-T	0.4282	4E-19	(MTAG)	0.0209	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q21.2	Intergenic	rs7963801-T	0.4282	3E-15		0.023	[0.017-0.029] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1192	chr12	79685225	79685226	rs7963801	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.2	SYT1	rs7963801-T	NR	1E-14		7.738	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1192	chr12	79686970	79686971	rs10861798	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	12q21.2		rs10861798-?	NR	6E-11				NR [7857346] (imputed)	N
1192	chr12	79686970	79686971	rs10861798	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	12q21.2	SYT1	rs10861798-A	0.433	1E-10		0.1482	[0.1-0.19] kg increase	Affymetrix [at least 17000000] (imputed)	N
1192	chr12	79689788	79689789	rs143576372	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q21.2		rs143576372-?	NR	8E-6		0.9177439	[0.52-1.32] unit increase	Illumina [9842460] (imputed)	N
1193	chr12	79738883	79738884	rs17005500	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	12q21.2	SYT1	rs17005500-?	NR	2E-7	(Hispanic)	1.724138	[1.41-2.13]	Illumina [at least 5000000] (imputed)	N
1193	chr12	79747486	79747487	rs1732664	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.2	ENSG00000257894	rs1732664-T	NR	4E-8		5.491	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1193	chr12	79773102	79773103	rs190948096	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	12q21.2	SYT1	rs190948096-?	NR	4E-8		8.729	[5.6-11.86] unit decrease	Illumina [30341014] (imputed)	N
1193	chr12	79775247	79775248	rs11114027	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.2	SYT1	rs11114027-A	0.094	3E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
1193	chr12	79811428	79811429	rs7310309	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	12q21.2	NR	rs7310309-T	0.15	9E-6		1.83	[1.40-2.39]	Illumina [7261187] (imputed)	N
1194	chr12	79845196	79845197	rs115059325	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.2	NR	rs115059325-G	0.01045	2E-8	(EIF3K)	0.02042	NR unit decrease	Illumina [1671387] (imputed)	N
1194	chr12	79895818	79895819	rs4842313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q21.2		rs4842313-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1194	chr12	79904657	79904658	rs7964067	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q21.2	intergenic	rs7964067-A	0.185	6E-12		0.2499	[0.18-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1194	chr12	79908742	79908743	rs11114149	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q21.2		rs11114149-A	0.6278	2E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1194	chr12	79925801	79925802	rs11614730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q21.2		rs11614730-A	NR	2E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1194	chr12	79925801	79925802	rs11614730	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	12q21.2	SH3RF3	rs11614730-?		4E-13				NR [7428630] (imputed)	N
1194	chr12	79938855	79938856	rs4479056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q21.2	RP11-359M6.1	rs4479056-A	0.693805	1E-10		0.01551541	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q21.2		rs4842266-G	0.32	3E-150		26.11	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q21.2		rs4842266-G	0.32	4E-126		23.89	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q21.2		rs4842266-G	0.32	1E-71		17.9	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	12q21.2		rs4842266-G	0.32	1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q21.2		rs4842266-A	NR	2E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q21.2		rs4842266-A	NR	2E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q21.2		rs4842266-A	NR	2E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q21.2	NR	rs4842266-G	0.2998	1E-17				NR [9056863] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q21.2	NR	rs4842266-G	0.2998	1E-17				NR [9056863] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q21.2	NR	rs4842266-A	0.687639	1E-12		0.014242	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q21.2	NR	rs4842266-?		2E-16				NR [7428630] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q21.2	SYT1, PAWR	rs4842266-?		1E-23				NR [7428630] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q21.2	NR	rs4842266-A	0.6616	2E-14	(Superior Frontal)	31.132444	[23.15-39.12] unit decrease	Affymetrix, Illumina [NR]	N
1194	chr12	79951565	79951566	rs4842266	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	12q21.2	RP11-359M6.3	rs4842266-G	0.4077	1E-9		1.06	[1.04-1.08]	Affymetrix [at least 20323458] (imputed)	N
1194	chr12	79951565	79951566	rs4842266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q21.2		rs4842266-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1194	chr12	79953177	79953177	rs35825704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	12q21.2		rs35825704-TA	0.303319	3E-9		0.021802	[0.015-0.029] unit decrease	Illumina [13477769] (imputed)	N
1195	chr12	79974564	79974565	rs4842316	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.2	NR	rs4842316-T	0.594967	1E-13				Affymetrix, Illumina [24649327] (imputed)	N
1195	chr12	80019426	80019427	rs4842267	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q21.2		rs4842267-?	NR	1E-31				NR [9705931] (imputed)	N
1195	chr12	80040133	80040134	rs80010377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.2		rs80010377-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1195	chr12	80044166	80044167	rs4842318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q21.2		rs4842318-T	NR	4E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1195	chr12	80062229	80062230	rs7297018	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	12q21.2	PAWR	rs7297018-A	0.19	4E-6				Perlegen [378332]	N
1196	chr12	80115932	80115933	rs7308197	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	12q21.2	NR	rs7308197-?	NR	6E-15		7.812	NR z score decrease	Illumina [at least 830937] (imputed)	N
1196	chr12	80157551	80157552	rs17005877	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	12q21.2	intergenic	rs17005877-G	NR	2E-7				Illumina [NR]	N
1196	chr12	80178560	80178561	rs113146373	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	12q21.2	NR	rs113146373-?	NR	3E-6		0.1339413	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1197	chr12	80256765	80256766	rs7306779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.2	NR	rs7306779-T	0.881148	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1197	chr12	80309655	80309656	rs148031082	34834527	Park S	2021-11-10	J Pers Med	Interaction of Polygenetic Variants for Gestational Diabetes Mellitus Risk with Breastfeeding and Korean Balanced Diet to Influence Type 2 Diabetes Risk in Later Life in a Large Hospital-Based Cohort.	Gestational diabetes mellitus	384 cases, 33,956 controls	NA	12q21.31		rs148031082-?	NR	4E-6		2.48	[1.61-3.82]	Affymetrix [NR]	N
1197	chr12	80321019	80321020	rs4842324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q21.31	NR	rs4842324-A	0.916902	4E-11		0.022156	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1197	chr12	80327801	80327804	rs79789360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q21.31	PPP1R12A	rs79789360-G	0.9192647	7E-10		0.025342261	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr12	80344467	80344468	rs2895747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q21.31		rs2895747-T	NR	1E-15		0.0217	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1197	chr12	80344467	80344468	rs2895747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.31	NR	rs2895747-T	0.791787	2E-16				Affymetrix, Illumina [24588908] (imputed)	N
1198	chr12	80353895	80353895	rs541102729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q21.31	NR	rs541102729-TGGCAAAGCAAAGCAAA	0.9379619	2E-9		0.028491564	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr12	80353895	80353895	rs541102729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q21.31		rs541102729-TGGCAAAGCAAAGCAAA	0.9379527	1E-9		0.028505338	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr12	80353895	80353895	rs541102729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q21.31		rs541102729-TGGCAAAGCAAAGCAAA	0.9379458	2E-10		0.029907066	[0.021-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr12	80428529	80428530	rs78478398	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis (MPO-ANCA positive)	159 European ancestry cases, 6,688 European ancestry controls	43 European and unknown ancestry cases, 121 European and unknown ancestry controls	12q21.31	NR	rs78478398-?	NR	1E-8		1.62	NR unit increase	Affymetrix [9246221] (imputed)	N
1198	chr12	80429887	80429887	rs5799450	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12q21.31		rs5799450-CT	0.65922	1E-5		0.031909	[0.018-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1198	chr12	80463083	80463084	rs10778699	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	12q21.31	PPP1R12A	rs10778699-A	0.24	4E-6	(AA-glucose response)	4.28	[2.46-6.1] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1198	chr12	80474681	80474682	rs190909796	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q21.31	Intergenic	rs190909796-T	NR	5E-7	(between families)	5.038	unit increase	Affymetrix [up to 15107142] (imputed)	N
1199	chr12	80496922	80496923	rs10506821	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	12q21.31	intergenic	rs10506821-?	NR	2E-7	(ShaftW1f)			Affymetrix [70897]	N
1200	chr12	80699474	80699475	rs10862089	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	12q21.31		rs10862089-T	NR	1E-13		1.10849		Affymetrix, Illumina [62056310] (imputed)	N
1201	chr12	80765799	80765800	rs1551122	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End stage renal disease x APOL1 genotype interaction	1,749 African American ESRD cases, 901 African American lupus nephritis-ESRD cases	NA	12q21.31	OTOGL	rs1551122-?		9E-7		1.49	[1.27-1.76]	Illumina [NR]	N
1201	chr12	80795016	80795017	rs2717463	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q21.31	NR	rs2717463-A	0.8561	5E-6		0.0224	[0.013-0.032] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1202	chr12	80985871	80985872	rs1528287	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	12q21.31	NR	rs1528287-G	0.059	8E-10		0.494	[0.34-0.65] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
1204	chr12	81143462	81143463	rs11114594	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	12q21.31		rs11114594-C	0.9	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1204	chr12	81223947	81223948	rs12316031	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	12q21.31	MIR617	rs12316031-T	0.1	6E-6		1.46	[NR]	Illumina [NR] (imputed)	N
1205	chr12	81309261	81309262	rs11114650	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q21.31	NR	rs11114650-G	0.7758	3E-9		0.0447	[0.03-0.059] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1205	chr12	81309282	81309283	rs7974884	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs7974884-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81310651	81310652	rs11114652	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs11114652-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81310651	81310652	rs11114652	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs11114652-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81311381	81311382	rs34500073	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs34500073-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81311448	81311449	rs17007660	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs17007660-?		2E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81312712	81312713	rs6539535	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs6539535-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81312809	81312810	rs7959128	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q21.31	NR	rs7959128-?		3E-6	(EA)			Illumina [~ 5140000] (imputed)	N
1205	chr12	81337457	81337458	rs1163656	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	12q21.31	LIN7A	rs1163656-?	NR	9E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1205	chr12	81356826	81356827	rs11114664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q21.31		rs11114664-T	NR	2E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1206	chr12	81430042	81430043	rs10862219	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q21.31	NR	rs10862219-T	0.404	4E-7		0.018208038	[0.011-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
1206	chr12	81430598	81430599	rs10862220	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	12q21.31	ACSS3	rs10862220-T	NR	3E-10		0.00842419	[0.0058-0.011] unit decrease	Affymetrix [10061374] (imputed)	N
1206	chr12	81475632	81475633	rs7138951	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	12q21.31	ACSS3	rs7138951-G	0.094	5E-6		0.12	[0.061-0.179] unit increase	Illumina [2316178] (imputed)	N
1206	chr12	81487962	81487963	rs11114758	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	12q21.31	NR	rs11114758-CTGTG	0.7224	5E-7		0.8144	[0.5-1.13] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1206	chr12	81494251	81494252	rs12296937	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts (age at onset)	5,503 European, Black, and other ancestry cases age 50 and older	NA	12q21.31	LIN7A, ACSS3, PPFIA2	rs12296937-G	0.0267	6E-7		1.08	[NR] unit decrease	Illumina [530101]	N
1206	chr12	81518236	81518237	rs142426031	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	12q21.31	ACSS3	rs142426031-?		7E-6				Illumina [2668805]	N
1207	chr12	81544535	81544536	rs10492002	23726668	Hunter AM	2013-05-30	J Psychiatr Res	A genome-wide association study of a sustained pattern of antidepressant response.	Response to antidepressant treatment (citalopram)	869 European, Hispanic, African American, Asian, mixed race and other ancestry sustained response individuals, 247 European, Hispanic, African American, Asian, mixed race and other ancestry unsustained response individuals	394 European ancestry sustained response individuals, 191 European ancestry unsustained response individuals	12q21.31	ACSS3	rs10492002-?	NR	4E-6		1.64	[1.33-2.00]	Affymetrix [430198]	N
1207	chr12	81552337	81552338	rs11835646	30563176	Westermair AL	2018-12-05	Biomolecules	Association of Genetic Variation at AQP4 Locus with Vascular Depression.	Severe depressive disorders in coronary artery disease	78 European ancestry cases, 264 European ancestry controls	NA	12q21.31	NR	rs11835646-T	0.44	4E-6		2.12	[1.47-3.06]	Affymetrix [6341066] (imputed)	N
1207	chr12	81595699	81595700	rs11114787	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.31	ACSS3	rs11114787-?		6E-6				Illumina [4322238] (imputed)	N
1207	chr12	81595699	81595700	rs11114787	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.31	ACSS3	rs11114787-?		1E-6				Illumina [4322238] (imputed)	N
1207	chr12	81595699	81595700	rs11114787	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	12q21.31	ACSS3	rs11114787-T	0.27	2E-9		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1207	chr12	81598583	81598584	rs7136590	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.31	ACSS3	rs7136590-?		1E-7				Illumina [4322238] (imputed)	N
1207	chr12	81601463	81601464	rs10506274	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	12q21.31	ACSS3	rs10506274-G	0.5121	2E-7		0.0053	[0.0033-0.0073] unit increase	Affymetrix [~ 7740000] (imputed)	N
1207	chr12	81601463	81601464	rs10506274	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q21.31	NR	rs10506274-T	0.484	8E-11		0.00856984	[0.006-0.0112] unit decrease	NR [~ 9732723] (imputed)	N
1207	chr12	81601463	81601464	rs10506274	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	12q21.31	NR	rs10506274-T	0.484	6E-10		0.009037403	[0.0062-0.0119] unit decrease	NR [~ 10000000] (imputed)	N
1207	chr12	81608057	81608058	rs61934664	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	12q21.31	NR	rs61934664-A	0.495	7E-11		0.013408667	[0.0094-0.0174] unit decrease	Affymetrix [10613246] (imputed)	N
1207	chr12	81608057	81608058	rs61934664	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	12q21.31	NR	rs61934664-A	0.476	4E-11		0.011366487	[0.008-0.0147] unit decrease	Affymetrix [NR] (imputed)	N
1208	chr12	81723187	81723188	rs188255132	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	PPFIA2	rs188255132-A	1.0	4E-6	(AA)	2.347	NR unit increase	Illumina [NR] (imputed)	N
1208	chr12	81742539	81742540	rs147408780	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	12q21.31	PPFIA2	rs147408780-T	0.01	8E-6		0.2633	[0.15-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1209	chr12	81843127	81843128	rs12426725	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	12q21.31	PPFIA2	rs12426725-?	NR	4E-6	(EA)	1.37	[NR]	Illumina [up to 531195]	N
1209	chr12	81870538	81870539	rs6539569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q21.31	Intergenic	rs6539569-A	0.2502	3E-8		0.0124	[0.0079-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1210	chr12	81932980	81932981	rs2400954	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	12q21.31	PPFIA2	rs2400954-C	0.37	4E-6		1.2345679	[1.16-1.31]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1210	chr12	81975564	81975565	rs11114920	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPFIA2	rs11114920-?	NR	2E-8	(male)	2.14004	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1210	chr12	81991517	81991518	rs12227811	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPFIA2	rs12227811-?	NR	2E-9		2.30556	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1211	chr12	82064385	82064386	rs11114975	31467194	Ganna A	2019-08-01	Science	Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior.	same-sex sexual behaviour	188,825 European ancestry males, 220,170 European ancestry females	NA	12q21.31	NR	rs11114975-C	NR	1E-7		0.0035	[0.0021-0.0049] unit increase	Affymetrix [NR] (imputed)	N
1211	chr12	82090615	82090616	rs2066955	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA		intergenic	rs2066955-A	0.237	5E-6		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1211	chr12	82139954	82139955	rs7137360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q21.31		rs7137360-T	NR	9E-11		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1211	chr12	82153089	82153090	rs11115002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q21.31	NR	rs11115002-T	NR	2E-9		0.0167	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1211	chr12	82169272	82169273	rs5799556	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q21.31	NR	rs5799556-G	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
1212	chr12	82210058	82210059	rs9669629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q21.31		rs9669629-A	NR	2E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1212	chr12	82219375	82219376	rs12579753	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	12q21.31	PPFIA2	rs12579753-T	0.23	5E-10		0.2456	[0.17-0.32] unit decrease	Affymetrix [19941912] (imputed)	N
1212	chr12	82236839	82236840	rs12309133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.31		rs12309133-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1212	chr12	82249502	82249503	rs4360772	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q21.31		rs4360772-?	NR	3E-8				NR [NR]	N
1212	chr12	82257632	82257633	rs10862376	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q21.31	Intergenic	rs10862376-A	0.1482	2E-10	(MTAG)	0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr12	82257632	82257633	rs10862376	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q21.31	Intergenic	rs10862376-A	0.1452	1E-9	(MTAG)	0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr12	82258774	82258775	rs11115056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.31		rs11115056-A	0.0995	2E-15		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1212	chr12	82258774	82258775	rs11115056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.31	Intergenic	rs11115056-A	0.0995	3E-15	(MTAG)	0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1212	chr12	82263772	82263773	rs17750264	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	12q21.31	NR	rs17750264-?	NR	7E-6		0.1206	[0.069-0.172] unit increase	Illumina [at least 560000] (imputed)	N
1213	chr12	82325520	82325521	rs78962209	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q21.31	NR	rs78962209-?	NR	2E-6		4.743	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1213	chr12	82345328	82345329	rs11115117	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	12q21.31	NR	rs11115117-C	NR	2E-8		0.01946	NR unit increase	NR [7259579]	N
1213	chr12	82364958	82364959	rs11533561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q21.31		rs11533561-A	NR	1E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1213	chr12	82371458	82371459	rs77290633	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12q21.31		rs77290633-C	0.01102	4E-6		4.247	[2.301-7.84]	Affymetrix [7975321] (imputed)	N
1213	chr12	82376965	82376966	rs139770682	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	12q21.31	intergenic	rs139770682-C	5.0E-4	5E-8		0.094615586	[0.061-0.129] m decrease	Illumina [24111857] (imputed)	N
1213	chr12	82389123	82389124	rs11115148	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	12q21.31	intergenic	rs11115148-?		2E-6				NR [~ 3000000] (imputed)	N
1213	chr12	82424099	82424100	rs11115160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.31	NR	rs11115160-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1213	chr12	82426465	82426466	rs11115162	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	12q21.31	intergenic	rs11115162-C	0.18	6E-6	(male)	0.272	[0.15-0.39] unit increase	Illumina [6380737] (imputed)	N
1213	chr12	82428757	82428758	rs10862426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.31		rs10862426-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1214	chr12	82462225	82462226	rs7137515	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q21.31	NR	rs7137515-G	0.260927853582555	6E-6	(IGP76)	0.1637	[0.093-0.235] unit decrease	Illumina [~ 2500000] (imputed)	N
1214	chr12	82463438	82463439	rs183160876	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs183160876-T	1.0	9E-7	(AA)	2.194	NR unit increase	Illumina [NR] (imputed)	N
1214	chr12	82465796	82465797	rs11115176	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q21.31	NA	rs11115176-T	0.7839	7E-12		0.0131	[0.0094-0.0168] unit increase	NR [~ 27400000] (imputed)	N
1214	chr12	82499323	82499324	rs147623050	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12q21.31		rs147623050-T	0.01148	5E-6		4.149	[2.252-7.643]	Affymetrix [7975321] (imputed)	N
1214	chr12	82536843	82536844	rs4542491	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs4542491-C	1.0	3E-6	(AA)	2.107	NR unit increase	Illumina [NR] (imputed)	N
1214	chr12	82550024	82550025	rs139236384	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs139236384-G	1.0	1E-6	(AA)	2.192	NR unit increase	Illumina [NR] (imputed)	N
1215	chr12	82576219	82576220	rs10778876	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q21.31	NR	rs10778876-?	NR	3E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1216	chr12	82748338	82748339	rs143136847	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	12q21.31	CCDC59	rs143136847-G	0.007	6E-8		2.6	[NR]	Illumina [8207076] (imputed)	N
1216	chr12	82769900	82769901	rs117185507	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.31	NR	rs117185507-A	0.03659	2E-9	(KRT2)	0.1962	NR unit increase	Illumina [1671387] (imputed)	N
1216	chr12	82796010	82796011	rs17712868	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.31	NR	rs17712868-?	NR	9E-10				Affymetrix [NR]	N
1216	chr12	82799272	82799273	rs17775000	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.31	NR	rs17775000-G	0.03659	2E-9	(KRT2)	0.1962	NR unit increase	Illumina [1671387] (imputed)	N
1216	chr12	82823135	82823136	rs75809015	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	12q21.31	METTL25	rs75809015-?		2E-7		193.7	[120.59-266.81] unit increase	Illumina [~ 10000000] (imputed)	N
1217	chr12	82899374	82899375	rs79079217	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.31	NR	rs79079217-T	0.04181	7E-9	(KRT2)	0.1779	NR unit increase	Illumina [1671387] (imputed)	N
1218	chr12	82984878	82984879	rs12425131	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q21.31	TMTC2	rs12425131-?		2E-6	(EA)			Illumina [NR]	N
1218	chr12	83019187	83019188	rs11115322	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q21.31	TMTC2	rs11115322-?		3E-6	(EA)			Illumina [NR]	N
1218	chr12	83063415	83063416	rs78550087	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	12q21.31	Intergenic	rs78550087-?		2E-6				Illumina [301908]	N
1218	chr12	83073194	83073195	rs763354545	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q21.31	TMTC2	rs763354545-A	0.0018	3E-6		0.5618	[0.33-0.8] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr12	83078618	83078619	rs74106266	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	12q21.31	TMTC2	rs74106266-?	NR	2E-6		0.564	[0.33-0.8] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1219	chr12	83105415	83105416	rs570311619	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q21.31		rs570311619-T	0.003506	7E-6		0.25411	[0.14-0.37] unit decrease	Affymetrix [15580782] (imputed)	N
1219	chr12	83106276	83106277	rs17009882	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.31	TMTC2	rs17009882-?		8E-6				Illumina [4322238] (imputed)	N
1219	chr12	83108939	83108940	rs11615763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.31		rs11615763-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1219	chr12	83108979	83108980	rs11615765	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.31	TMTC2	rs11615765-T	0.894411	7E-10		0.0186798	[0.013-0.025] unit increase	NR [13737936] (imputed)	N
1220	chr12	83252886	83252887	rs142129235	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12q21.31		rs142129235-?	NR	5E-6		0.25	[0.14-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1220	chr12	83308362	83308363	rs12810016	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	12q21.31	TMTC2	rs12810016-?	0.006897	3E-6		22.74	[NR]	Affymetrix [559609]	N
1221	chr12	83415627	83415628	rs4144978	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	12q21.31		rs4144978-?	NR	2E-10				NR [9705931] (imputed)	N
1222	chr12	83502772	83502773	rs12320842	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Faecalibacterium id.2057)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q21.31		rs12320842-C	NR	8E-9		5.7777743	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1222	chr12	83507268	83507269	rs7302697	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	12q21.31	TMTC2	rs7302697-?		2E-6	(EA)	0.12253226	[0.072-0.173] unit decrease	Illumina [13620258] (imputed)	N
1222	chr12	83523856	83523857	rs11115606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q21.31		rs11115606-T	0.33	4E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
1223	chr12	83647443	83647444	rs12580743	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	12q21.31		rs12580743-T	0.662465	3E-6		0.0131023	[0.0074-0.0188] unit increase	Illumina [13900000] (imputed)	N
1223	chr12	83656924	83656925	rs12814314	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12q21.31	TMTC2	rs12814314-G	0.0664851949467374	4E-6		0.0049595	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1224	chr12	83763586	83763587	rs200741614	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	12q21.31		rs200741614-G	0.078	2E-6		1.25	[1.14-1.38]	Illumina [7199488] (imputed)	N
1224	chr12	83790730	83790731	rs188088967	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Myopathy (PheCode 359.2)	226 European ancestry cases, 456,122 European ancestry controls	NA	12q21.31		rs188088967-T	4.669E-4	1E-9		32.34	[21.97-42.71] unit increase	NR [11842647] (imputed)	N
1225	chr12	83917046	83917047	rs3112090	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q21.31	RP11-384P14.1	rs3112090-T	0.4612	2E-8		0.011302535	[0.0073-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1225	chr12	83922911	83922912	rs10862688	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	12q21.31	TMTC2	rs10862688-G	NR	1E-11		0.008	[0.0060-0.0100] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1225	chr12	83938604	83938605	rs324801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q21.31		rs324801-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1225	chr12	83944821	83944822	rs2731218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.31		rs2731218-A	0.5658	1E-18	(conditional-joint)	0.0125	[0.0098-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1225	chr12	83948054	83948055	rs324788	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	12q21.31	TMTC2, SLC6A15	rs324788-T	NR	2E-32		0.0853	unit decrease	Illumina [15409056] (imputed)	N
1225	chr12	83959230	83959231	rs61952219	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	12q21.31	TMTC2	rs61952219-G	0.79	8E-25		0.02	[0.017-0.023] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1225	chr12	83967521	83967522	rs324766	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q21.31		rs324766-T	0.42	2E-11		6.71	z score increase	Affymetrix [9061022] (imputed)	N
1225	chr12	83967521	83967522	rs324766	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q21.31	NR	rs324766-T	0.4407	3E-11				NR [9056863] (imputed)	N
1225	chr12	83969099	83969100	rs324768	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q21.31	NR	rs324768-G	0.384	3E-9		0.00663578	[0.0044-0.0088] unit decrease	NR [9732723] (imputed)	N
1225	chr12	83969099	83969100	rs324768	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	12q21.31	NR	rs324768-G	0.383	2E-9		0.00958473	[0.0065-0.0127] unit decrease	NR [9732723] (imputed)	N
1225	chr12	83969239	83969240	rs324769	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	12q21.31	NR	rs324769-C	0.55	3E-8		0.027	unit increase	NR [2324712] (imputed)	N
1225	chr12	83969239	83969240	rs324769	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q21.31	RP11-384P14.1	rs324769-T	0.4492	5E-11		0.013365595	[0.0094-0.0174] unit increase	Affymetrix [up to 18485882] (imputed)	N
1225	chr12	83978116	83978117	rs442376	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	12q21.31	TMTC2	rs442376-C		3E-13	(EA)	0.034	[0.024-0.044] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	83978116	83978117	rs442376	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	12q21.31	TMTC2	rs442376-C		2E-14		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	83979285	83979286	rs482507	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	12q21.31	TMTC2	rs482507-C	NR	6E-15	(EA)	0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	83979285	83979286	rs482507	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	12q21.31	TMTC2	rs482507-C	NR	3E-14		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	83979285	83979286	rs482507	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	12q21.31	Intergenic	rs482507-?	NR	2E-8		0.0239438	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1225	chr12	84000667	84000668	rs324775	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	12q21.31	TMTC2	rs324775-C	0.462	6E-17		0.019	[0.015-0.023] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1225	chr12	84000690	84000691	rs324776	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	12q21.31	TMTC2	rs324776-T	0.46	1E-20		0.012	[0.01-0.014] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
1225	chr12	84003865	84003866	rs324780	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q21.31	TMTC2, SLC6A15	rs324780-G	0.46	2E-75		0.02	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1225	chr12	84003865	84003866	rs324780	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	12q21.31	TMTC2	rs324780-G	NR	7E-23		0.011	[0.009-0.013] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	84003865	84003866	rs324780	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	12q21.31	TMTC2	rs324780-G	NR	6E-21	(EA)	0.011	[0.009-0.013] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1225	chr12	84008274	84008275	rs2403106	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	12q21.31	TMTC2	rs2403106-?	0.07	3E-6		2.48	[1.70-3.61]	Illumina [346110]	N
1225	chr12	84017042	84017043	rs2645979	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q21.31	TMTC2	rs2645979-G	0.642633	9E-9		0.0114379	[0.0075-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
1226	chr12	84023387	84023388	rs2667477	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	12q21.31	TMTC2	rs2667477-T	0.45	2E-14		0.03	[0.022-0.038] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
1226	chr12	84025580	84025581	rs11115937	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q21.31		rs11115937-A	0.42	6E-19		8.89	z score increase	Affymetrix [9061022] (imputed)	N
1226	chr12	84025580	84025581	rs11115937	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q21.31		rs11115937-A	0.42	1E-13		7.44	z score increase	Affymetrix [9061022] (imputed)	N
1226	chr12	84038477	84038478	rs12309467	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	12q21.31	TMTC2, SLC6A15	rs12309467-C	NR	2E-9		1.08	1.06-1.11	Affymetrix [at least 665500] (imputed)	N
1226	chr12	84040062	84040063	rs57856452	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q21.31	NR	rs57856452-A	0.4677	4E-16				NR [9056863] (imputed)	N
1226	chr12	84043145	84043146	rs7972441	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12q21.31	intergenic	rs7972441-C	0.357495	1E-11		0.0148836	[0.011-0.019] unit increase	NR [16516521] (imputed)	N
1226	chr12	84045566	84045567	rs10862708	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12q21.31	TMTC2	rs10862708-A	0.56	2E-29		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1226	chr12	84061430	84061431	rs1511589	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	12q21.31	TMTC2	rs1511589-A	0.46	9E-8	(EA)	0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1226	chr12	84061430	84061431	rs1511589	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	12q21.31	TMTC2	rs1511589-A	0.46	1E-9		0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1226	chr12	84061430	84061431	rs1511589	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	12q21.31	TMTC2	rs1511589-A	0.46	5E-6		0.012	[0.0061-0.0179] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1226	chr12	84070365	84070366	rs7485554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q21.31		rs7485554-A	NR	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1226	chr12	84070365	84070366	rs7485554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q21.31		rs7485554-A	NR	3E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1226	chr12	84077442	84077443	rs6539771	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	12q21.31	TMTC2	rs6539771-C	NR	8E-10		0.00809546	[0.0055-0.0107] unit increase	Affymetrix [10061374] (imputed)	N
1226	chr12	84086175	84086176	rs189010983	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q21.31	TMTC2, SLC6A15	rs189010983-C	0.01	6E-7		0.5157	[0.32-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
1226	chr12	84086175	84086176	rs189010983	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q21.31	TMTC2, SLC6A15	rs189010983-C	0.01	5E-7	(EA)	0.5182	[0.32-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
1226	chr12	84093669	84093670	rs7971608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q21.31		rs7971608-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1226	chr12	84100207	84100208	rs10129035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q21.31		rs10129035-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1226	chr12	84107863	84107863	rs34272260	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	12q21.31	intergenic	rs34272260-A	0.3594	2E-13		0.0736	[0.054-0.093] unit increase	NR [9744772] (imputed)	N
1226	chr12	84120797	84120798	rs2125948	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q21.31	TMTC2, SLC6A15	rs2125948-G	0.57	4E-36		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1226	chr12	84128014	84128015	rs10779035	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q21.31	NR	rs10779035-T	0.427613	4E-9		0.0119655	[0.008-0.016] unit decrease	NR [NR]	N
1226	chr12	84131035	84131036	rs7972528	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	12q21.31	TMTC2	rs7972528-T	0.47	4E-8		0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1226	chr12	84131035	84131036	rs7972528	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	12q21.31	TMTC2	rs7972528-T	0.47	3E-9	(EA)	0.016	[0.010-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1226	chr12	84133369	84133370	rs73153655	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q21.31	TMTC2, SLC6A15	rs73153655-A	0.81	2E-32		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1226	chr12	84133819	84133820	rs717996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q21.31	Intergenic	rs717996-T	0.6169	5E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1226	chr12	84133819	84133820	rs717996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.31		rs717996-T	0.5986	2E-17		0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1226	chr12	84133819	84133820	rs717996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.31	Intergenic	rs717996-T	0.5986	1E-17	(MTAG)	0.0115	[0.009-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1227	chr12	84196528	84196529	rs11116045	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q21.31	RPL6P25	rs11116045-G	0.269	2E-7	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1227	chr12	84199728	84199728	rs58687115	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 12)	3,566 European ancestry individuals	4,680 European ancestry individuals	12q21.31		rs58687115-C	0.486960179	5E-11				Illumina [7417619] (imputed)	N
1227	chr12	84233309	84233310	rs1460373	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q21.31	NR	rs1460373-?	NR	8E-7		0.0425	[0.026-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
1227	chr12	84247858	84247859	rs11608507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q21.31		rs11608507-T	NR	2E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1228	chr12	84336130	84336131	rs12824754	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.31	SLC6A15	rs12824754-?	NR	3E-6	(sorbitol)	0.24341963	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1228	chr12	84336910	84336911	rs7486418	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q21.31	NR	rs7486418-T	0.657	7E-11		1.042	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1228	chr12	84378574	84378575	rs7954120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.31	Intergenic	rs7954120-A	0.8001	2E-8	(MTAG)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1228	chr12	84395427	84395428	rs4385969	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q21.31		rs4385969-A	0.369493754	2E-11				Illumina [7417619] (imputed)	N
1229	chr12	84465021	84465022	rs56314503	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	12q21.31	NR	rs56314503-G	0.2513	1E-16		1.0204082	[1.02-1.03]	NR [8098588] (imputed)	N
1229	chr12	84493065	84493066	rs4480613	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q21.31	NR	rs4480613-T	NR	3E-9		5.925	z score increase	Affymetrix [10847151] (imputed)	N
1229	chr12	84498631	84498632	rs11614007	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	12q21.31		rs11614007-?	NR	2E-9		0.0221	unit increase	NR [NR]	N
1230	chr12	84564435	84564436	rs7314511	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12q21.31		rs7314511-?	NR	6E-6		0.32	[0.18-0.46] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1230	chr12	84614504	84614504	rs376674848	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	12q21.31	LOC107984536	rs376674848-CGT	0.607588	2E-7		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1231	chr12	84698233	84698234	rs2956278	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q21.31	LOC401725/LOC100128335	rs2956278-G	0.21480900000000003	7E-9		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1231	chr12	84698233	84698234	rs2956278	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q21.31	LOC401725/LOC100128335	rs2956278-G	0.21480900000000003	1E-7		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1231	chr12	84698233	84698234	rs2956278	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	12q21.31	NR	rs2956278-G	0.234	2E-7		1.037	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1231	chr12	84698233	84698234	rs2956278	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	12q21.31	NR	rs2956278-A	0.7754	2E-9		0.0158	[0.011-0.021] unit decrease	Illumina [NR] (imputed)	N
1231	chr12	84698233	84698234	rs2956278	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	12q21.31	NR	rs2956278-A	0.7754	2E-8		0.0167	[0.011-0.023] unit decrease	Illumina [NR] (imputed)	N
1231	chr12	84700944	84700945	rs12310246	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q21.31	NR	rs12310246-A	0.2489	5E-11		1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1231	chr12	84700944	84700945	rs12310246	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q21.31	NA	rs12310246-A	0.2509	2E-8	(Female)	1.049	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1231	chr12	84709215	84709216	rs2956287	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	12q21.31	NR	rs2956287-?		5E-11				NR [11140414]	N
1231	chr12	84709215	84709216	rs2956287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q21.31	NR	rs2956287-A	NR	5E-11		6.573	z score decrease	Affymetrix [10847151] (imputed)	N
1231	chr12	84758367	84758368	rs12831617	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	12q21.31		rs12831617-C	0.764	2E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1231	chr12	84759777	84759778	rs146219909	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.31	NR	rs146219909-?	NR	4E-6		15.349	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1231	chr12	84766775	84766776	rs7955525	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	12q21.31	NR	rs7955525-?		4E-10				NR [520857]	N
1232	chr12	84806297	84806298	rs10862858	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q21.31	SLC6A15	rs10862858-A	0.43	1E-12		0.46	[0.34-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1232	chr12	84886572	84886573	rs993226	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	12q21.31	SLC6A15, TMTC2	rs993226-G	0.034	5E-9		1.58	[1.35-1.84]	Affymetrix, Illumina [1633153] (imputed)	N
1232	chr12	84923376	84923377	rs2468307	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q21.31	SLC6A15	rs2468307-A	0.4295	7E-13		0.4815	[0.35-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1232	chr12	84926131	84926135	rs201486960	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q21.31	intergenic	rs201486960-?	NR	2E-7	(AA)	0.124	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1233	chr12	84941428	84941429	rs2125716	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	12q21.31	SLC6A15	rs2125716-G	0.765477	3E-8		0.0345	[0.021-0.048] unit decrease	Illumina [1220000] (imputed)	N
1233	chr12	84957602	84957603	rs10161004	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.31	TSPAN19	rs10161004-?	NR	6E-6	(malate)	3.2429848	[1.84-4.64] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1233	chr12	85009436	85009437	rs202049448	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12q21.31		rs202049448-T	NR	9E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1233	chr12	85009436	85009437	rs202049448	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12q21.31	intergenic	rs202049448-T	0.659999999999999	3E-8	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1233	chr12	85011089	85011090	rs11116498	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	12q21.31	NR	rs11116498-?	NR	3E-6		0.0045	[0.0025-0.0065] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1233	chr12	85012312	85012313	rs10779113	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	12q21.31	NR	rs10779113-?	NR	3E-6		0.0045	[0.0025-0.0065] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1233	chr12	85038135	85038136	rs1017722	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	12q21.31	Intergenic	rs1017722-?		5E-6	(female)	0.401	[0.23-0.57] unit increase	NR [~ 5500000] (imputed)	N
1233	chr12	85055561	85055562	rs10779122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.31		rs10779122-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1234	chr12	85091401	85091402	rs55722036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.31		rs55722036-?	NR	9E-21				NR [~ 8900000] (imputed)	N
1234	chr12	85171780	85171781	rs7313112	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	12q21.31	Intergenic	rs7313112-?	NR	8E-6		1.098901	[1.05-1.14]	Affymetrix, Illumina [39235000] (imputed)	N
1234	chr12	85172584	85172585	rs117703208	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12q21.31		rs117703208-?	NR	9E-6		0.4023429	[0.23-0.58] unit decrease	Illumina [9901720] (imputed)	N
1234	chr12	85187510	85187511	rs4761097	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	12q21.31	SLC6A15	rs4761097-G	0.449	2E-6	(Alcohol dependence)			Illumina [527829]	N
1235	chr12	85237616	85237617	rs10746336	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q21.31	NR	rs10746336-?		2E-6				Illumina [4322238] (imputed)	N
1235	chr12	85241172	85241173	rs192643599	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	12q21.31	NR	rs192643599-G	NR	7E-6		0.315	[0.18-0.45] SD units increase	NR [10700000] (imputed)	N
1235	chr12	85259191	85259192	rs73170061	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,360 Icelandic ancestry individuals	NA	12q21.31		rs73170061-T	0.01989	2E-14		0.0804685	[0.06-0.101] unit increase	Illumina [7506463] (imputed)	N
1235	chr12	85272868	85272869	rs7955752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.31		rs7955752-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1236	chr12	85337111	85337112	rs35352631	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	12q21.31	NR	rs35352631-?	NR	8E-7		0.4104	[0.25-0.57] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1236	chr12	85341136	85341137	rs112209655	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q21.31	LOC102724680	rs112209655-?	NR	2E-7	(AA)	0.066	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1236	chr12	85377869	85377870	rs12309229	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12309229-G	0.67352	1E-9		0.0529078	[0.034-0.072] increase	Affymetrix [11014269] (imputed)	N
1236	chr12	85391255	85391256	rs75043711	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	12q21.31	TSPAN19	rs75043711-A	0.2007	8E-6		0.0515	[0.029-0.074] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1236	chr12	85394356	85394357	rs56889024	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q21.31	TSPAN19	rs56889024-C	NR	6E-6		1.4665297	[0.82-2.11] unit increase	Illumina [> 6200000] (imputed)	N
1236	chr12	85424092	85424093	rs116910038	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	TSPAN19	rs116910038-T	0.982	3E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
1236	chr12	85435433	85435434	rs1852148	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12q21.31	LRRIQ1	rs1852148-A	0.47	1E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1237	chr12	85516903	85516904	rs17012589	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		12q21.31	LRRIQ1	rs17012589-G	NR	4E-6		0.09	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1237	chr12	85566207	85566208	rs12817187	32341457	Sato Y	2020-04-27	J Hum Genet	Genome-wide association study of semen volume, sperm concentration, testis size, and plasma inhibin B levels.	Inhibin B levels	811 Japanese ancestry individuals	721 Japanese ancestry individuals	12q21.31	NR	rs12817187-?	0.27	1E-7		0.21	[0.13-0.29] pg/ml increase	Illumina [3901256] (imputed)	N
1237	chr12	85576491	85576492	rs11609649	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q21.31		rs11609649-A	0.16	1E-37		12.81	z score increase	Affymetrix [9061022] (imputed)	N
1237	chr12	85576491	85576492	rs11609649	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q21.31		rs11609649-A	0.16	3E-24		10.17	z score increase	Affymetrix [9061022] (imputed)	N
1237	chr12	85576491	85576492	rs11609649	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q21.31	NR	rs11609649-A	0.1734	1E-17				NR [9056863] (imputed)	N
1237	chr12	85576491	85576492	rs11609649	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q21.31		rs11609649-A	0.179247312	7E-29				Illumina [7417619] (imputed)	N
1237	chr12	85576491	85576492	rs11609649	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	12q21.31	LRRIQ1	rs11609649-?	NR	1E-12		0.033	[0.024-0.043] unit increase	Illumina [12039491] (imputed)	N
1238	chr12	85591154	85591155	rs140287439	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 230)	19,670 European ancestry individuals	NA	12q21.31		rs140287439-?	NR	2E-18				NR [9705931] (imputed)	N
1238	chr12	85621933	85621934	rs12827555	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q21.31	LRRIQ1, ALX1	rs12827555-?		2E-8				NR [7428630] (imputed)	N
1238	chr12	85660446	85660447	rs56166460	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q21.31		rs56166460-A	0.17	3E-22		9.7	z score increase	Affymetrix [9061022] (imputed)	N
1238	chr12	85660446	85660447	rs56166460	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q21.31	NR	rs56166460-A	0.1871	6E-17				NR [9056863] (imputed)	N
1238	chr12	85671451	85671452	rs4074726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q21.31		rs4074726-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1238	chr12	85674220	85674221	rs115440539	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.31	NR	rs115440539-G	0.01045	2E-9	(SEPT11)	0.04319	NR unit decrease	Illumina [1671387] (imputed)	N
1238	chr12	85686487	85686488	rs11116771	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	12q21.31	NR	rs11116771-?	NR	2E-9	(Quadrant I (Philtrum), Segment 37)	0.028859533	NR unit increase	NR [7417619] (imputed)	N
1238	chr12	85686487	85686488	rs11116771	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	12q21.31	NR	rs11116771-?	NR	1E-8	(Quadrant I (Philtrum), Segment 18)	0.025534026	NR unit increase	NR [7417619] (imputed)	N
1238	chr12	85695612	85695613	rs1011728	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		12q21.31	ALX1	rs1011728-T	NR	6E-7		0.1	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
1238	chr12	85719905	85719906	rs56390486	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q21.31	ALX1/RASSF9	rs56390486-A	0.2905	2E-12		0.0196	[0.014-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1238	chr12	85719905	85719906	rs56390486	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q21.31	ALX1/RASSF9	rs56390486-A	0.2905	3E-8		0.0143	[0.0092-0.0194] unit increase	Affymetrix [19819130] (imputed)	N
1239	chr12	85724095	85724096	rs10779158	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q21.31	ALX1, RASSF9	rs10779158-A	0.34	2E-8	(EA)	18.72	[12.23-25.21] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1239	chr12	85724095	85724096	rs10779158	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q21.31	ALX1, RASSF9	rs10779158-A	0.34	4E-8	(EA)	15.89	[10.21-21.57] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1239	chr12	85724304	85724305	rs7971039	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q21.31	ALX1, RASSF9	rs7971039-A	0.28	8E-8	(EA)	18.6	[11.82-25.38] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1239	chr12	85724304	85724305	rs7971039	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q21.31	ALX1, RASSF9	rs7971039-A	0.26	1E-8		16.36	[10.72-22] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1239	chr12	85724304	85724305	rs7971039	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q21.31		rs7971039-?	NR	4E-7		12.8	[7.86-17.74] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1239	chr12	85790004	85790005	rs7973247	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12q21.31		rs7973247-G	0.976192	1E-5		0.0402135	[0.022-0.058] unit decrease	Illumina [13900000] (imputed)	N
1239	chr12	85808403	85808404	rs74112009	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 30)	2,595 Tanzanian ancestry individuals	NA	12q21.31		rs74112009-?	NR	2E-15				Illumina [NR] (imputed)	N
1240	chr12	85881916	85881917	rs10779162	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q21.31		rs10779162-T	0.073656846	4E-17				Illumina [7417619] (imputed)	N
1240	chr12	85953370	85953371	rs75719543	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	12q21.31	RP11-408B11.2, RP11-629O19.1	rs75719543-T	0.9688	5E-7	(EA)	0.0809	[0.05-0.112] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1240	chr12	85967803	85967804	rs10779169	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	12q21.31	ALX1, RASSF9	rs10779169-?	NR	4E-8		0.023	[0.031-0.015] unit decrease	Illumina [12039491] (imputed)	N
1241	chr12	86093732	86093733	rs765366	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	12q21.31	ALX1	rs765366-G	0.168	4E-8		1.27	NR	Illumina [at least 870261] (imputed)	N
1242	chr12	86138833	86138834	rs1564120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.31		rs1564120-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1242	chr12	86195922	86195923	rs140785266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs140785266-G	1.0	4E-6	(AA)	0.412	unit increase	Illumina [NR] (imputed)	N
1242	chr12	86226992	86226993	rs2405628	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	12q21.31	NR	rs2405628-T	0.13682	8E-7		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1243	chr12	86259457	86259458	rs7132746	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	12q21.31	intergenic	rs7132746-C	0.8751	9E-6	(Case/control)	0.3439	[0.19-0.5] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1243	chr12	86259457	86259458	rs7132746	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	12q21.31	intergenic	rs7132746-C	0.8751	2E-6	(Ordinal II)	0.3623	[0.21-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1243	chr12	86284458	86284459	rs79843055	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs79843055-C	1.0	4E-7	(AA)	0.425	unit increase	Illumina [NR] (imputed)	N
1243	chr12	86318547	86318548	rs147510300	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs147510300-G	1.0	8E-7	(AA)	0.498	unit increase	Illumina [NR] (imputed)	N
1243	chr12	86321387	86321388	rs150696478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	Intergenic	rs150696478-A	1.0	8E-7	(AA)	0.498	unit increase	Illumina [NR] (imputed)	N
1243	chr12	86332324	86332325	rs10863114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q21.31	Intergenic	rs10863114-T	0.5957	5E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1243	chr12	86335503	86335504	rs78268213	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q21.31		rs78268213-?	NR	6E-6		1.1156676	[1.06391415931142-1.1699384521504]	Illumina [7827597] (imputed)	N
1243	chr12	86343134	86343135	rs1448094	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	12q21.31	intergenic	rs1448094-T	NR	1E-6	(females)	0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1243	chr12	86369118	86369119	rs10506913	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	12q21.31	NR	rs10506913-G	NR	9E-6		1.4941		Affymetrix [8183964] (imputed)	N
1244	chr12	86457595	86457596	rs7299005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.31		rs7299005-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1244	chr12	86459039	86459040	rs7295765	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q21.31	MGAT4C	rs7295765-A	0.7971	4E-8		0.014850353	[0.0096-0.0201] unit decrease	Affymetrix [11514654] (imputed)	N
1244	chr12	86463712	86463713	rs77717051	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.31	NR	rs77717051-T	0.02091	1E-8	(SEPT11)	0.02793	NR unit decrease	Illumina [1671387] (imputed)	N
1245	chr12	86544238	86544239	rs76177788	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	MGAT4C	rs76177788-T	1.0	4E-7	(AA)	0.49	unit increase	Illumina [NR] (imputed)	N
1245	chr12	86564925	86564926	rs188585019	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	MGAT4C	rs188585019-A	0.999	7E-7	(AA)	0.49	unit increase	Illumina [NR] (imputed)	N
1245	chr12	86574855	86574856	rs11103881	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	2,102 European ancestry neonates	NA	12q21.31	MGAT4C	rs11103881-T	NR	9E-7		0.223	[0.13-0.31] unit decrease	Illumina [7361275] (imputed)	N
1245	chr12	86595689	86595690	rs839156	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	12q21.31		rs839156-?	NR	6E-7				Illumina [3311160] (imputed)	N
1245	chr12	86598864	86598865	rs187003284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.31	MGAT4C	rs187003284-T	1.0	7E-7	(AA)	0.545	unit increase	Illumina [NR] (imputed)	N
1245	chr12	86612850	86612851	rs143213189	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q21.31	NR	rs143213189-?	NR	1E-6		0.364231	[0.22-0.51] unit decrease	NR [13958389] (imputed)	N
1245	chr12	86633371	86633372	rs61949042	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q21.31		rs61949042-?	NR	7E-6		1.1140343	[1.06285922521271-1.16767336930584]	Illumina [7827597] (imputed)	N
1247	chr12	86810029	86810030	rs11103954	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.32	NTS	rs11103954-?	NR	6E-6	(creatine)	0.83543336	[0.47-1.2] unit increase	Affymetrix [at least 2500000] (imputed)	N
1247	chr12	86860975	86860976	rs140444490	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	MGAT4C	rs140444490-C	0.999	1E-6	(AA)	0.431	unit increase	Illumina [NR] (imputed)	N
1247	chr12	86864239	86864240	rs142054194	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	MGAT4C	rs142054194-T	0.999	1E-6	(AA)	0.43	unit increase	Illumina [NR] (imputed)	N
1248	chr12	86997110	86997111	rs57146176	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	12q21.32	NR	rs57146176-G		7E-6		0.0942	[0.053-0.135] SD units increase	NR [10700000] (imputed)	N
1248	chr12	87005575	87005576	rs183244340	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	MGAT4C	rs183244340-T	0.999	5E-7	(AA)	0.366	unit increase	Illumina [NR] (imputed)	N
1248	chr12	87020503	87020504	rs10444512	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.32	NTS	rs10444512-?	NR	6E-6	(creatine)	0.8396262	[0.48-1.2] unit increase	Affymetrix [at least 2500000] (imputed)	N
1249	chr12	87044886	87044887	rs148137046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs148137046-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1249	chr12	87145222	87145223	rs2217235	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q21.32	NR	rs2217235-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1249	chr12	87161877	87161878	rs9706217	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q21.32		rs9706217-T	0.157	2E-8		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
1250	chr12	87198151	87198152	rs71438922	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	12q21.32	NR	rs71438922-G		8E-6		0.121	[0.068-0.174] SD units increase	NR [10700000] (imputed)	N
1250	chr12	87229741	87229742	rs187035304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	MGAT4C	rs187035304-T	0.999	7E-7	(AA)	0.318	unit increase	Illumina [NR] (imputed)	N
1250	chr12	87252359	87252360	rs75750649	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q21.32	NR	rs75750649-?	NR	3E-8	(Japanese)	0.8691	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1251	chr12	87341773	87341774	rs187039407	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	Intergenic	rs187039407-T	0.999	6E-7	(AA)	0.296	unit increase	Illumina [NR] (imputed)	N
1251	chr12	87358180	87358181	rs117123338	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	12q21.32	intergenic	rs117123338-A	0.0311	9E-6		1.30474	NR	Affymetrix, Illumina [30341632] (imputed)	N
1251	chr12	87360220	87360221	rs144148493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	Intergenic	rs144148493-G	0.999	7E-7	(AA)	0.295	unit increase	Illumina [NR] (imputed)	N
1251	chr12	87404129	87404130	rs77628219	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.32	Intergenic	rs77628219-G	0.999	1E-6	(AA)	0.277	unit increase	Illumina [NR] (imputed)	N
1252	chr12	87477466	87477467	rs12422471	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	12q21.32	LOC105369878	rs12422471-T	0.0397	7E-6		1.28415	NR	Affymetrix, Illumina [30341632] (imputed)	N
1252	chr12	87519583	87519584	rs184079650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs184079650-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1253	chr12	87626483	87626484	rs1326737	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	12q21.32	NR	rs1326737-T	0.9252	3E-6		0.0333	[0.019-0.047] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1253	chr12	87659988	87659989	rs11104379	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	12q21.32	MGAT4C	rs11104379-G	NR	2E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1253	chr12	87659988	87659989	rs11104379	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q21.32	NR	rs11104379-G	NR	5E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1254	chr12	87728442	87728443	rs10858583	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	12q21.32	NR	rs10858583-C	0.23	2E-7		1.84	[NR]	Affymetrix [703012]	N
1254	chr12	87787480	87787481	rs147865473	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	12q21.32	NR	rs147865473-G	0.0378	5E-8		0.02484716	[0.016-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1254	chr12	87802065	87802066	rs112505569	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	12q21.32	intergenic	rs112505569-T	0.84	1E-6		4.44	NR mg decrease	NR [NR] (imputed)	N
1255	chr12	87870088	87870089	rs4842464	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		12q21.32	NR	rs4842464-C	NR	2E-6		0.438362	[0.26-0.62] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1255	chr12	87924028	87924029	rs149377438	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12q21.32		rs149377438-G	0.986544	1E-6		0.0579472	[0.035-0.081] unit decrease	Illumina [13900000] (imputed)	N
1256	chr12	88041429	88041430	rs10858628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs10858628-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1257	chr12	88205032	88205033	rs35466244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs35466244-?	NR	6E-29				NR [~ 8900000] (imputed)	N
1258	chr12	88223684	88223685	rs11104632	27271309	Li C	2016-08-01	Hypertension	Genome-Wide Gene-Sodium Interaction Analyses on Blood Pressure: The Genetic Epidemiology Network of Salt-Sensitivity Study.	Systolic blood pressure x sodium interaction (2df test)	1,876 Han Chinese ancestry individuals	775 Chinese ancestry individuals	12q21.32	LOC105369882	rs11104632-?	NR	5E-8				Affymetrix [2216774] (imputed)	N
1258	chr12	88338460	88338461	rs10745460	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	12q21.32	NR	rs10745460-T	0.66	4E-8		0.079	[0.052-0.106] unit increase	Affymetrix, Illumina [945603] (imputed)	N
1259	chr12	88354522	88354523	rs11104688	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	12q21.32	NR	rs11104688-T	0.8898	1E-6	(Trans/cis-18:2, EA)	0.0089	[0.0054-0.0124] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1259	chr12	88379519	88379520	rs11104702	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	12q21.32		rs11104702-T	NR	5E-7		1.68847	NR	Affymetrix [7846216] (imputed)	N
1259	chr12	88384763	88384764	rs79606326	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	12q21.32	NR	rs79606326-?	NR	4E-7				Affymetrix [28509962] (imputed)	N
1259	chr12	88406470	88406471	rs34404753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs34404753-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1260	chr12	88490118	88490119	rs11104733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	12q21.32		rs11104733-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1260	chr12	88517560	88517560	rs35110721	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	12q21.32	CEP290	rs35110721-?	0.0	1E-9				Affymetrix [547296]	N
1261	chr12	88648079	88648080	rs112511621	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	12q21.32	C12orf50, C12orf29, CEP290, TMTC3	rs112511621-T	0.1762	6E-6		2.4087	[2.03-2.79]	Illumina [8809853] (imputed)	N
1261	chr12	88674622	88674623	rs7487365	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.32	TMTC3	rs7487365-C	0.06804	2E-10		1.15	NR	Affymetrix [9154080] (imputed)	N
1261	chr12	88677323	88677324	rs7966318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs7966318-?	NR	1E-267				NR [~ 8900000] (imputed)	N
1261	chr12	88681976	88681977	rs2216153	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.32	TMTC3	rs2216153-?	NR	6E-85		1.1892021	NR	Affymetrix [9154080] (imputed)	N
1261	chr12	88695011	88695012	rs11104803	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	12q21.32	NR	rs11104803-C	0.9127	3E-6	(Trans/cis-18:2, EA)	0.0067	[0.004-0.0094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1261	chr12	88708488	88708489	rs7977437	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	12q21.32	TMTC3	rs7977437-?	NR	3E-30		1.2004802	NR	Affymetrix [9154080] (imputed)	N
1262	chr12	88736600	88736601	rs7306001	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.32	TMTC3	rs7306001-A	0.07106	8E-12		1.125	NR	Affymetrix [9154080] (imputed)	N
1262	chr12	88787662	88787663	rs11104850	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	12q21.32	NR	rs11104850-A	0.1078	4E-7	(Trans/cis-18:2, EA)	0.0078	[0.0049-0.0107] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1262	chr12	88794324	88794325	rs11104852	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.32	NR	rs11104852-?	NR	1E-22				Affymetrix [NR]	N
1262	chr12	88811688	88811689	rs4842610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q21.32		rs4842610-T	0.704508	6E-9		0.0141392015	[0.0094-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr12	88811688	88811689	rs4842610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q21.32		rs4842610-T	0.704584	1E-41		0.033405714	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr12	88811688	88811689	rs4842610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q21.32		rs4842610-T	0.704548	2E-9		0.01453988	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr12	88811688	88811689	rs4842610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs4842610-T	0.677822	7E-13				Affymetrix, Illumina [23467995] (imputed)	N
1262	chr12	88811688	88811689	rs4842610	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		12q21.32	NR	rs4842610-T	NR	2E-6	(conditioned on rs1426654)	0.27829	[0.16-0.39] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q21.32		rs6538148-G	NR	2E-24		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q21.32		rs6538148-G	NR	2E-21		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q21.32		rs6538148-G	0.702823	1E-30		0.027821166	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs6538148-G	0.669996	5E-41				Affymetrix, Illumina [24332387] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q21.32	NR	rs6538148-G	0.70372	3E-42		0.027671	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q21.32		rs6538148-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q21.32	intergenic	rs6538148-G	0.7032	4E-14		0.02952502	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q21.32	intergenic	rs6538148-G	0.7032	2E-14		0.02952569	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88818478	88818479	rs6538148	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q21.32	intergenic	rs6538148-G	0.7032	2E-14		0.02969466	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88828729	88828730	rs34428798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q21.32		rs34428798-T	NR	4E-20		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1262	chr12	88829293	88829294	rs11104870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs11104870-T	0.668701	2E-32				Affymetrix, Illumina [24649327] (imputed)	N
1262	chr12	88829293	88829294	rs11104870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q21.32		rs11104870-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1262	chr12	88829293	88829294	rs11104870	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12q21.32	KITLG	rs11104870-C	0.3	6E-11	(EA, RBCC)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q21.32		rs7487314-G	0.299	6E-21		0.11	[-0.14--0.09] % decrease	Affymetrix [NR] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q21.32	NR	rs7487314-T	0.701344	5E-26		0.025468169	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q21.32		rs7487314-G	0.298655	7E-10		0.014961268	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q21.32	NR	rs7487314-T	0.702411	2E-48		0.029109	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs7487314-T	0.666937	2E-37				Affymetrix, Illumina [20825802] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q21.32	NR	rs7487314-T	0.701106	3E-39		0.027587	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1262	chr12	88836214	88836215	rs7487314	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	12q21.32	Y_RNA	rs7487314-G	0.306652	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1262	chr12	88837243	88837244	rs11104877	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	12q21.32	NR	rs11104877-T	0.8926	4E-7	(Trans/cis-18:2, EA)	0.0079	[0.0048-0.011] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q21.32		rs11104881-C	NR	1E-21		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q21.32		rs11104881-C	NR	5E-30		0.0245	[0.02-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q21.32		rs11104881-C	0.700669	1E-25		0.025326326	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q21.32		rs11104881-C	0.700743	2E-24		0.0317348	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q21.32		rs11104881-C	0.700747	9E-32		0.028311234	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q21.32	NR	rs11104881-C	0.702031	2E-34		0.024735	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs11104881-C	0.675233	1E-31				Affymetrix, Illumina [23114412] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q21.32	NR	rs11104881-C	0.701718	8E-35		0.025942	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q21.32	NR	rs11104881-C	0.702076	3E-14		0.015568	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1262	chr12	88843473	88843474	rs11104881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q21.32	intergenic	rs11104881-C	0.7007	1E-10		0.02529057	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q21.32		rs10858740-G	0.700532	1E-40		0.0325701	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.32	NR	rs10858740-G	0.669363	6E-49				Affymetrix, Illumina [24246363] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q21.32		rs10858740-?	NR	7E-31				NR [~ 8900000] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q21.32	intergenic	rs10858740-G	0.701	5E-10		0.02443559	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q21.32	intergenic	rs10858740-G	0.7009	7E-11		0.02559368	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	12q21.32	intergenic	rs10858740-G	0.701	2E-10		0.02513619	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88845034	88845035	rs10858740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q21.32	intergenic	rs10858740-G	0.7009	4E-10		0.02463975	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr12	88850449	88850450	rs115183712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.32		rs115183712-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1263	chr12	88890670	88890671	rs995030	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	12q21.32	KITLG	rs995030-G	0.8	2E-50		2.26	[1.95-2.61]	Illumina [307291]	N
1263	chr12	88890670	88890671	rs995030	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	12q21.32	KITLG	rs995030-A	NR	3E-13		2.3256	[1.85-2.94]	Illumina [NR]	N
1263	chr12	88890670	88890671	rs995030	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	12q21.32	KITLG	rs995030-G	0.80	1E-31		2.55	[2.05-3.19]	Illumina [307666]	N
1263	chr12	88890670	88890671	rs995030	19483681	Rapley EA	2009-05-31	Nat Genet	A genome-wide association study of testicular germ cell tumor.	Testicular germ cell tumor	730 cases, 1,435 controls	571 cases, 1,806 controls	12q21.32	KITLG	rs1508595-G	0.83	3E-30		2.69	[2.10-3.44]	Illumina [307666]	N
1263	chr12	88918742	88918743	rs1022034	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	12q21.32	KITLG	rs1022034-T	0.203786	7E-11		1.0358255	NR	Affymetrix [~ 9600000] (imputed)	N
1263	chr12	88936647	88936648	rs1492348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q21.32	KITLG	rs1492348-A	0.948881	5E-9		0.0508381	[0.042-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1263	chr12	88940156	88940157	rs35618688	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.32	KITLG	rs35618688-A	0.06058	1E-8		1.113	NR	Affymetrix [9154080] (imputed)	N
1263	chr12	88949123	88949124	rs7313352	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	12q21.32	KITLG	rs7313352-?	NR	8E-9	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
1263	chr12	88953560	88953561	rs3782181	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	12q21.32	KITLG	rs3782181-A	0.8	1E-76		2.02	1.88-2.18	Illumina [9210350] (imputed)	N
1263	chr12	88953560	88953561	rs3782181	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	12q21.32	KITLG	rs3782181-C	0.81	3E-129		2.07	[2.01-2.12]	Illumina [at least 371504] (imputed)	N
1263	chr12	88953560	88953561	rs3782181	20543847	Turnbull C	2010-06-13	Nat Genet	Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer.	Testicular germ cell cancer	979 European ancestry cases, 4,947 European ancestry controls	664 European ancestry cases, 3,456 European ancestry controls	12q21.32	KITLG	rs3782181-?	0.78	2E-26		2.22	[1.89-2.56]	Illumina [298782]	N
1263	chr12	88953958	88953959	rs4474514	19483682	Kanetsky PA	2009-05-31	Nat Genet	Common variation in KITLG and at 5q31.3 predisposes to testicular germ cell cancer.	Testicular cancer	277 European ancestry cases, 919 European ancestry controls	371 European ancestry  cases with their 408 parents, 860 European ancestry controls	12q21.32	KITLG	rs4474514-A	NR	6E-15		3.07	[2.29-4.13]	Affymetrix [611254]	N
1263	chr12	88955468	88955469	rs1907702	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	12q21.32		rs1907702-A	NR	6E-24		2.3995833	NR	Affymetrix [7846216] (imputed)	N
1263	chr12	88955641	88955642	rs1907703	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.32	KITLG	rs1907703-?	NR	2E-24		1.1227125	NR	Affymetrix [9154080] (imputed)	N
1264	chr12	89008363	89008364	rs2639099	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	12q21.33	NR	rs2639099-T	NR	4E-9		0.106	[0.02-0.192] unit increase	Affymetrix [8351141] (imputed)	N
1264	chr12	89011250	89011251	rs34200313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs34200313-?	NR	1E-167				NR [~ 8900000] (imputed)	N
1264	chr12	89051633	89051634	rs11104986	32433338	St Jean PL	2020-05-19	Pharmacogenet Genomics	Pharmacogenetic assessment of tafenoquine efficacy in patients with Plasmodium vivax malaria.	Tafenoquine efficacy in P. vivax malaria (recurrence by 4 months)	438 cases	NA	12q21.33		rs11104986-G		4E-9		42.3	[7.95-225.10]	Affymetrix [10600000] (imputed)	N
1264	chr12	89110409	89110410	rs72620727	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index b* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	12q21.33	KITLG	rs72620727-C	0.384	1E-23		0.28	unit decrease	Illumina [5032876] (imputed)	N
1264	chr12	89110409	89110410	rs72620727	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index L* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	12q21.33	KITLG	rs72620727-C	0.384	1E-20		0.36	unit increase	Illumina [5032876] (imputed)	N
1265	chr12	89175076	89175077	rs17016033	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12q21.33		rs17016033-G	NR	1E-5		0.4134	unit increase	Illumina [NR] (imputed)	N
1266	chr12	89289254	89289255	rs191780267	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	12q21.33	LOC728084	rs191780267-C	0.01	4E-7		0.59	[0.37-0.81] g/cm2 increase	Illumina [NR] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	12q21.33		rs12821256-T	NR	9E-11		0.4662	[0.33-0.61] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	12q21.33	KITLG	rs12821256-C	0.1195	1E-62		1.446	NR	Affymetrix [9154080] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.33	KITLG	rs12821256-C	0.1194	2E-308		1.659	NR	Affymetrix [9154080] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	12q21.33	KITLG	rs12821256-T	0.112	1E-100		0.197	[0.19-0.2] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	12q21.33	KITLG	rs12821256-?	0.128	1E-10		1.4829	[1.36-1.60]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	12q21.33	KITLG	rs12821256-?	0.128	1E-9		1.4366	[1.32-1.55]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	12q21.33	KITLG	rs12821256-?	0.872	1E-10		1.4892032	[1.37-1.61]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	12q21.33	KITLG	rs12821256-C	NR	7E-19		0.18	[0.14-0.22] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1266	chr12	89328334	89328335	rs12821256	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	12q21.33	KITLG	rs12821256-C	0.14	4E-30		2.32	[1.86-2.92]	Illumina [317511]	N
1266	chr12	89329323	89329324	rs146898186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs146898186-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1266	chr12	89340111	89340112	rs12298351	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q21.33	KITLG	rs12298351-?	NR	2E-11		1.1686339	NR	Affymetrix [9154080] (imputed)	N
1266	chr12	89369805	89369806	rs11608458	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	12q21.33		rs11608458-T	0.64	6E-11		0.0629	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1267	chr12	89426731	89426732	rs10858818	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.33	NR	rs10858818-?	NR	6E-7				Affymetrix [NR]	N
1267	chr12	89470890	89470891	rs12820818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs12820818-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1268	chr12	89541655	89541656	rs10858828	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q21.33	KITLG, DUSP6	rs10858828-G	0.78	1E-8		5.71	z-score increase	Affymetrix [4314223] (imputed)	N
1268	chr12	89554609	89554610	rs10745495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q21.33		rs10745495-G	NR	1E-11		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1268	chr12	89554609	89554610	rs10745495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q21.33		rs10745495-G	NR	2E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1268	chr12	89574005	89574006	rs191022259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q21.33	RP11-13A1.3	rs191022259-C	0.00114800000000004	9E-11		0.22001854	[0.15-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1268	chr12	89620539	89620540	rs2029605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q21.33		rs2029605-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1268	chr12	89624205	89624206	rs11105213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q21.33	RP11-13A1.3	rs11105213-G	0.138943	1E-9		0.01954049	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1268	chr12	89632747	89632748	rs4842486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q21.33	RP11-13A1.3	rs4842486-T	0.728988	1E-9		0.015295606	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1268	chr12	89632747	89632748	rs4842486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q21.33	NR	rs4842486-T	0.726856	2E-10		0.01337	[0.0093-0.0175] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1268	chr12	89632747	89632748	rs4842486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q21.33		rs4842486-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1268	chr12	89643639	89643640	rs58696617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs58696617-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1269	chr12	89726026	89726027	rs704067	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q21.33	NR	rs704067-A	0.4517	2E-10		0.0116	[0.0081-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1269	chr12	89743935	89743936	rs704077	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.33	NR	rs704077-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1269	chr12	89745476	89745477	rs2279574	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	12q21.33	DUSP6	rs2279574-C	0.457488	3E-8		0.0119008	[0.0078-0.016] unit decrease	NR [16516521] (imputed)	N
1269	chr12	89745476	89745477	rs2279574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q21.33	Intergenic	rs2279574-A	0.5329	4E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr12	89745476	89745477	rs2279574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q21.33	Intergenic	rs2279574-A	0.5334	8E-15	(MTAG)	0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr12	89745476	89745477	rs2279574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q21.33	Intergenic	rs2279574-C	0.4666	3E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1269	chr12	89745476	89745477	rs2279574	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q21.33	Intergenic	rs2279574-A	0.5431	2E-9	(MTAG)	0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr12	89748583	89748586	rs35928531	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	12q21.33	NR	rs35928531-?		2E-9				NR [520857]	N
1269	chr12	89758045	89758046	rs1689437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q21.33	NA	rs1689437-A	0.9461	5E-13		0.0246	[0.018-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1269	chr12	89760743	89760744	rs1427829	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	12q21.33	NR	rs1427829-?		2E-9				NR [8028859]	N
1269	chr12	89760743	89760744	rs1427829	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	12q21.33	NR	rs1427829-A	NR	6E-7		1.08	[1.05-1.11]	Illumina [~ 1092418] (imputed)	N
1269	chr12	89760743	89760744	rs1427829	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	12q21.33	DUSP6	rs1427829-A	NR	7E-9		1.021	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1269	chr12	89760743	89760744	rs1427829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.33		rs1427829-A	0.4546	3E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1269	chr12	89760743	89760744	rs1427829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q21.33	Intergenic	rs1427829-A	0.4546	2E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr12	89767236	89767237	rs797267	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	12q21.33	intergenic	rs797267-G	NR	4E-9		1.098901	[1.06-1.12]	NR [5009020] (imputed)	N
1269	chr12	89769139	89769140	rs1688569	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q21.33		rs1688569-T	0.807	9E-13		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1269	chr12	89771902	89771903	rs704061	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q21.33		rs704061-C	0.45	2E-22				NR [NR] (imputed)	N
1269	chr12	89771902	89771903	rs704061	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q21.33		rs704061-C	0.45	8E-24		0.015	% increase	NR [NR] (imputed)	N
1269	chr12	89771902	89771903	rs704061	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	12q21.33		rs704061-?	NR	2E-8		0.0194	NR unit decrease	NR [4428082] (imputed)	N
1269	chr12	89771902	89771903	rs704061	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	12q21.33		rs704061-?	NR	5E-8		0.0124	NR unit decrease	NR [5568121] (imputed)	N
1269	chr12	89771902	89771903	rs704061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q21.33	NR	rs704061-C	0.455246	3E-10		0.011604	[0.008-0.0152] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1269	chr12	89771902	89771903	rs704061	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.33	NR	rs704061-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1269	chr12	89771902	89771903	rs704061	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q21.33	NR	rs704061-C	0.4528	4E-11		0.016451912	[0.012-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1269	chr12	89771902	89771903	rs704061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.33		rs704061-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1269	chr12	89771902	89771903	rs704061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q21.33	NA	rs704061-T	0.5518	4E-11		0.0118	[0.0083-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1269	chr12	89771902	89771903	rs704061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q21.33	NA	rs704061-T	0.5535	8E-17		0.0142	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1269	chr12	89771902	89771903	rs704061	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q21.33	NA	rs704061-T	0.5535	8E-17		0.0142	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1269	chr12	89771902	89771903	rs704061	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.33		rs704061-T	0.5451	4E-9	(conditional-joint)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1269	chr12	89775068	89775069	rs811745	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q21.33	NR	rs811745-?	NR	1E-8	(right medial orbitofrontal)			NR [9227495] (imputed)	N
1269	chr12	89775592	89775593	rs61925087	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	12q21.33	DUSP6, POC1B, MRPS6P4, CENPC1P1	rs61925087-T	NR	6E-6	(sleep onset irregularity)	0.08353	[0.047-0.12] unit decrease	Affymetrix [7141204] (imputed)	N
1269	chr12	89776484	89776485	rs770082	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	12q21.33	DUSP6	rs770082-A	NR	2E-6	(females)	0.12	[0.071-0.169] unit increase	Illumina [7531543] (imputed)	N
1269	chr12	89776852	89776852	rs397944660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q21.33		rs397944660-CT	NR	2E-14		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1269	chr12	89776852	89776852	rs397944660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q21.33		rs397944660-CT	NR	2E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1270	chr12	89830719	89830720	rs10777163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q21.33		rs10777163-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1270	chr12	89830869	89830870	rs10858851	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.33	NR	rs10858851-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1270	chr12	89831593	89831594	rs10777164	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASC4	5,364 Icelandic ancestry individuals	NA	12q21.33		rs10777164-A	0.2947	4E-12		0.144086	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1270	chr12	89838886	89838887	rs145485557	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.33	LOC105369889, POC1B	rs145485557-T	0.06	2E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1270	chr12	89838886	89838887	rs145485557	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	LOC105369889, POC1B	rs145485557-T	0.06	4E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1270	chr12	89838886	89838887	rs145485557	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	LOC105369889, POC1B	rs145485557-T	0.06	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1270	chr12	89840864	89840865	rs10777165	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q21.33	NR	rs10777165-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1270	chr12	89848869	89848870	rs7299139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs7299139-?	NR	3E-29				NR [~ 8900000] (imputed)	N
1270	chr12	89849783	89849783	rs367937136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q21.33		rs367937136-TTTG	NR	2E-13		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1270	chr12	89851231	89851232	rs7308380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q21.33	NR	rs7308380-C	0.750511	2E-13		0.015969	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1270	chr12	89853203	89853204	rs10535587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q21.33	POC1B	rs10535587-T	0.488059	1E-10		0.015518957	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr12	89853203	89853204	rs10535587	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q21.33	NR	rs10535587-T	0.482	1E-40	(CMRF35-like molecule 6, CD300C.5066.134.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1270	chr12	89864046	89864047	rs12306790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs12306790-T	0.727709	7E-18				Affymetrix, Illumina [23467995] (imputed)	N
1270	chr12	89864431	89864432	rs10777167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q21.33	NR	rs10777167-A	0.7147	2E-20		0.01913	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1270	chr12	89876142	89876143	rs11105298	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	B-type natriuretic peptide to N-terminal pro B-type natriuretic peptide ratio	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	12q21.33	POC1B, GALNT4	rs11105298-C	0.789	7E-23		0.21	[0.17-0.25] Unit increase	Illumina [7358451] (imputed)	N
1270	chr12	89891473	89891474	rs10858881	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q21.33	POC1B, POC1B-GALNT4, GALNT4, CENPCP1, RP11-734K2.4, RP11-734K2.3	rs10858881-G	0.2158635	5E-21	(EA, CMRF35-like molecule 6)	0.501	[0.4-0.6] unit decrease	Affymetrix [509946]	N
1270	chr12	89897387	89897388	rs11105306	26908625	Johansson A	2016-01-21	Hum Mol Genet	Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome.	NT-proBNP levels in acute coronary syndrome	at least 3,691 European ancestry individuals, up to 29 Asian ancestry individuals, 20 African ancestry individuals	at least 5,404 European ancestry individuals, up to 54 Asian ancestry individuals, 33 African ancestry individuals	12q21.33	POC1B, GALNT4	rs11105306-T	0.258	1E-16		0.187	[0.14-0.23] ng/L decrease	Illumina [10962468] (imputed)	N
1270	chr12	89898377	89898377	rs35761782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q21.33	POC1B	rs35761782-AT	0.7108	7E-11		0.02575606	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1270	chr12	89898377	89898377	rs35761782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q21.33	POC1B	rs35761782-AT	0.7108	5E-10		0.02457922	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1270	chr12	89903653	89903654	rs61378614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300C	5,367 Icelandic ancestry individuals	NA	12q21.33		rs61378614-C	0.1339	2E-21		0.251408	[0.2-0.3] unit decrease	Illumina [7506463] (imputed)	N
1270	chr12	89903653	89903654	rs61378614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300A	5,362 Icelandic ancestry individuals	NA	12q21.33		rs61378614-C	0.1339	5E-14		0.196823	[0.15-0.25] unit decrease	Illumina [7506463] (imputed)	N
1270	chr12	89903653	89903654	rs61378614	29237677	Salo PP	2017-12-01	Circ Cardiovasc Genet	Genome-Wide Association Study Implicates Atrial Natriuretic Peptide Rather Than B-Type Natriuretic Peptide in the Regulation of Blood Pressure in the General Population.	B-type natriuretic peptide to N-terminal pro B-type natriuretic peptide ratio	4,932 Finnish ancestry individuals	1,373 Finnish ancestry individuals	12q21.33	GALNT4, POC1B	rs61378614-C	0.84	4E-7	(Conditional)	0.101	[0.037-0.165] Unit increase	Illumina [7358451] (imputed)	N
1270	chr12	89904552	89904552	rs56654469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q21.33		rs56654469-CTTTT	NR	2E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1270	chr12	89904697	89904698	rs8181612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q21.33	POC1B	rs8181612-A	0.707279	3E-9		0.014527931	[0.0097-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr12	89906228	89906229	rs10777178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs10777178-C	0.727338	9E-10				Affymetrix, Illumina [19872809] (imputed)	N
1270	chr12	89908217	89908218	rs4254123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q21.33	POC1B	rs4254123-C	0.292816	8E-16		0.019748278	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr12	89921859	89921860	rs12306780	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q21.33	POC1B-GALNT4	rs12306780-A	0.653164	6E-17		0.00441823	[0.0034-0.0055] unit decrease	Affymetrix [13995440] (imputed)	N
1271	chr12	89926657	89926658	rs11105318	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD7	5,365 Icelandic ancestry individuals	NA	12q21.33		rs11105318-A	0.2534	2E-14		0.164742	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1271	chr12	89926657	89926658	rs11105318	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300C	5,367 Icelandic ancestry individuals	NA	12q21.33		rs11105318-A	0.2534	2E-54		0.32144	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
1271	chr12	89926657	89926658	rs11105318	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300A	5,362 Icelandic ancestry individuals	NA	12q21.33		rs11105318-A	0.2534	3E-29		0.231052	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1271	chr12	89930425	89930426	rs1492914	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q21.33	NR	rs1492914-T	0.24784	4E-10		0.0139192	[0.0096-0.0183] unit decrease	NR [NR]	N
1271	chr12	89933445	89933446	rs4842662	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	12q21.33		rs4842662-?	NR	2E-11		0.0538	[0.033-0.075] unit decrease	NR [NR] (imputed)	N
1271	chr12	89937436	89937437	rs722414	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q21.33	POC1B-GALNT4, GALNT4, POC1B, CENPCP1, RP11-734K2.4, RP11-734K2.3	rs722414-A	0.2318913	2E-14	(CMRF35-like molecule 6)	0.4048	[0.3-0.51] unit increase	Affymetrix [509946]	N
1271	chr12	89939323	89939324	rs75564981	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	12q21.33	POC1B	rs75564981-A		1E-7		0.228	[NR] unit increase	Illumina [24111857] (imputed)	N
1271	chr12	89939334	89939335	rs11105326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs11105326-A	0.756807	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
1271	chr12	89941548	89941549	rs4842666	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	12q21.33	POC1B, ATP2B1	rs4842666-T		4E-8	(EA, MAP, Age 40-49)	0.71	[0.46-0.96] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1271	chr12	89941548	89941549	rs4842666	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	12q21.33	POC1B, ATP2B1	rs4842666-T		2E-7	(EA, SBP, Age 40-49)	0.91	[0.58-1.24] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1271	chr12	89950319	89950320	rs7302816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q21.33		rs7302816-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1271	chr12	89950319	89950320	rs7302816	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	LOC102724782, POC1B	rs7302816-A	0.8	6E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	89950319	89950320	rs7302816	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	LOC102724782, POC1B	rs7302816-A	0.81	2E-17	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	4E-41	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	2E-54				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	1E-52				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?		4E-39	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	8E-47				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	3E-39	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	4E-37	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89965048	89965049	rs7313874	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	POC1B, ATP2B1	rs7313874-?	NR	2E-44				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q21.33		rs1689040-T	NR	1E-17		0.0429	[0.033-0.053] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q21.33		rs1689040-T	NR	5E-41		0.0261	[0.022-0.03] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q21.33		rs1689040-T	NR	3E-27		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	12q21.33		rs1689040-T	0.380824	6E-13		0.0260741	[0.019-0.033] unit decrease	Illumina [13477770] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.33	LOC102724782, ATP2B1	rs1689040-T	0.39	3E-68	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	LOC102724782, ATP2B1	rs1689040-T	0.39	2E-40	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	89978232	89978233	rs1689040	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	LOC102724782, ATP2B1	rs1689040-T	0.4	3E-21	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	89985292	89985296	rs10580742	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q21.33	ATP2B1	rs10580742-A	0.155	1E-19		0.3171	[0.25-0.39] mmHg decrease	Affymetrix [NR] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	12q21.33		rs1401982-A	0.618249	4E-27		0.0372519	[0.03-0.044] unit increase	Illumina [13477770] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	12q21.33		rs1401982-A	0.618269	1E-21		0.0338299	[0.027-0.041] unit increase	Illumina [13477767] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs1401982-A	0.62	3E-21	(Japanese)	0.7341	[0.58-0.89] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs1401982-A	0.6184	3E-14	(Japanese)	0.4064	[0.3-0.51] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs1401982-A	0.6184	1E-17	(Japanese)	0.4668	[0.36-0.57] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs1401982-A	0.6184	7E-7	(Japanese)	0.0689	[0.042-0.096] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs1401982-A	0.6184	2E-11	(Japanese)	0.333	[0.24-0.43] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	12q21.33	ATP2B1	rs1401982-?	NR	8E-24		0.0395	[0.032-0.047] unit increase	Illumina [6108953] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	12q21.33	ATP2B1	rs1401982-?	NR	3E-15		0.03094	[0.023-0.039] unit increase	Illumina [6108953] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	12q21.33	ATP2B1	rs1401982-?	NR	4E-19		0.0353	[0.028-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1271	chr12	89989598	89989599	rs1401982	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	12q21.33	ATP2B1	rs1401982-?	NR	8E-12		0.02685	[0.019-0.035] unit increase	Illumina [6108953] (imputed)	N
1271	chr12	89991312	89991313	rs117742247	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q21.33	ATP2B1	rs117742247-T	0.18	3E-8		1.06	[1.02-1.09]	Illumina [5167567] (imputed)	N
1271	chr12	89993506	89993507	rs11105337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12q21.33		rs11105337-T	NR	1E-9		0.1555	[0.11-0.21] unit decrease	Affymetrix, Illumina [25841674] (imputed)	N
1271	chr12	89993506	89993507	rs11105337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cerebral aneurysm	3,132 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12q21.33		rs11105337-T	0.377880175	3E-8		0.1501252	[0.097-0.203] unit decrease	Illumina [13426064] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q21.33		rs2681472-G	NR	1E-11		0.0715	[0.051-0.092] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q21.33	ATP2B1	rs2681472-G	0.184495	1E-12		1.07	[1.05-1.09]	NR [8126035] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	12q21.33	NR	rs2681472-A	0.719	7E-9		0.116	[0.077-0.155] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q21.33	ATP2B1	rs2681472-?	NR	7E-25		0.0601466	[0.049-0.072] unit increase	Illumina [4804024] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q21.33	ATP2B1	rs2681472-?	NR	3E-11		0.067597	[0.048-0.087] unit increase	Illumina [19707525] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.62	1E-20	(Japanese)	0.7207	[0.57-0.87] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.6231	5E-14	(Japanese)	0.4011	[0.3-0.5] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.6231	5E-17	(Japanese)	0.4576	[0.35-0.56] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.6231	1E-6	(Japanese)	0.0668	[0.04-0.094] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.6231	4E-11	(Japanese)	0.326	[0.23-0.42] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	12q21.33	ATP2B1	rs2681472-G	0.189	8E-11		1.07	[1.05-1.09]	Affymetrix [9149595] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q21.33	ATP2B1	rs2681472-C	0.159414221703133	1E-21		0.59229565	[0.47-0.71] unit decrease	Illumina [247039]	N
1271	chr12	90008958	90008959	rs2681472	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.6447	3E-6	(South Asians)	0.7819	[0.46-1.11] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	12q21.33	ATP2B1	rs2681472-G	0.19	6E-9		1.08	[1.05-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	12q21.33	ATP2B1	rs2681472-G	0.201306	6E-11		1.08	[1.05- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.83	2E-11		0.15	[0.11-0.19] log odds increase	Affymetrix, Illumina [2533153] (imputed)	N
1271	chr12	90008958	90008959	rs2681472	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	ATP2B1	rs2681472-A	0.83	1E-9		0.5	[0.34-0.66] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q21.33	ATP2B1	rs2681492-C	0.15	2E-8		0.87	[0.83-0.91]	Affymetrix [NR]	N
1271	chr12	90013088	90013089	rs2681492	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	12q21.33	ATP2B1	rs2681492-?	NR	2E-15		0.06472751	NR unit increase	Affymetrix [464137]	N
1271	chr12	90013088	90013089	rs2681492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q21.33		rs2681492-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.62	1E-20	(Japanese)	0.7231	[0.57-0.87] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.6238	5E-14	(Japanese)	0.4029	[0.3-0.51] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.6238	5E-17	(Japanese)	0.459	[0.35-0.57] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.6238	1E-6	(Japanese)	0.0669	[0.04-0.094] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.6238	4E-11	(Japanese)	0.3272	[0.23-0.42] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	12q21.33	ATP2B1	rs2681492-T	0.78	5E-46	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q21.33	ATP2B1	rs2681492-T	0.8141	9E-15		0.0558	[0.042-0.07] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q21.33	ATP2B1	rs2681492-T	0.8116	3E-15		0.0629	[0.047-0.079] unit decrease	NR [8041861] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		9E-14		0.525	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		9E-12	(EA)	0.536	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		3E-40		0.661	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		4E-9		0.275	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		2E-8	(EA)	0.296	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		2E-24		0.338	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		7E-8		0.247	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		2E-6	(EA)	0.241	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	ATP2B1	rs2681492-T		1E-24		0.311	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90013088	90013089	rs2681492	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q21.33	ATP2B1	rs2681492-T	0.80	4E-11		0.85	[0.60-1.10] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1271	chr12	90018233	90018234	rs12818945	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	12q21.33	ATP2B1	rs12818945-A	0.047	6E-6	(Adjusted)	2.38	[1.63-3.45]	Illumina [52371]	N
1271	chr12	90019177	90019178	rs57481061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q21.33	ATP2B1	rs57481061-G	0.167568	5E-17		0.02514498	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr12	90019177	90019178	rs57481061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q21.33	ATP2B1	rs57481061-G	0.167562	6E-18		0.02585736	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr12	90019177	90019178	rs57481061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q21.33	ATP2B1	rs57481061-G	0.167582	2E-13		0.021886319	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr12	90019177	90019178	rs57481061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q21.33	ATP2B1	rs57481061-G	0.167579	2E-13		0.022032643	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr12	90019177	90019178	rs57481061	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q21.33	ATP2B1	rs57481061-C	0.825	9E-14		0.061	[0.045-0.077] unit decrease	Affymetrix [7947838] (imputed)	N
1271	chr12	90019228	90019229	rs7297206	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	NR	rs7297206-T	0.762	4E-8	(East Asian)	0.0746	[0.048-0.101] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	12q21.33		rs2681485-A	0.616094	3E-17		0.0293264	[0.023-0.036] unit increase	Illumina [13477769] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q21.33		rs2681485-A	NR	4E-13		0.0468	[0.034-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	12q21.33		rs2681485-A	NR	2E-9		0.0407	[0.028-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	NR	rs2681485-A	0.616	6E-21	(East Asian)	0.4137	[0.33-0.5] unit increase	Illumina [6200000] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	ATP2B1	rs2681485-A	0.6	2E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90025621	90025622	rs2681485	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	ATP2B1	rs2681485-A	0.6	3E-25	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q21.33		rs11105352-A	NR	1E-56		0.0361	[0.032-0.041] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q21.33		rs11105352-A	NR	2E-42		0.0303	[0.026-0.035] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q21.33		rs11105352-A	NR	1E-15		0.0534	[0.04-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	12q21.33		rs11105352-A	NR	2E-8		0.0858	[0.056-0.116] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cerebral aneurysm	2,820 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	12q21.33		rs11105352-A	0.378242743	1E-8		0.8535324	[0.808266693-0.901333077]	Illumina [8919992] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q21.33	ATP2B1	rs11105352-A	0.166833	2E-16		0.087141976	[0.066-0.108] unit decrease	Affymetrix [7288503] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q21.33	ATP2B1	rs11105352-A	0.166874	6E-12		0.074474484	[0.053-0.096] unit decrease	Affymetrix [7288503] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	12q21.33	ATP2B1	rs11105352-A	0.16	2E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	ATP2B1	rs11105352-A	0.16	2E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	ATP2B1	rs11105352-A	0.16	2E-35	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		4E-14		0.55	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		3E-12	(EA)	0.571	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	NR	rs11105352-G		3E-40		0.686	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		7E-9	(EA)	0.316	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		1E-9		0.294	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	NR	rs11105352-G		3E-24		0.351	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		9E-8		0.254	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q21.33	NR	rs11105352-G		1E-6	(EA)	0.255	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026461	90026462	rs11105352	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q21.33	NR	rs11105352-G		3E-24		0.321	unit increase	Affymetrix [at least 2696785] (imputed)	N
1271	chr12	90026522	90026523	rs11105354	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q21.33	ATP2B1	rs11105354-G	0.8382	8E-42		0.6003	[0.51-0.69] mmHg increase	Affymetrix [NR] (imputed)	N
1271	chr12	90026522	90026523	rs11105354	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q21.33	ATP2B1	rs11105354-A	0.84	4E-29		0.909	[0.75-1.07] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1271	chr12	90026522	90026523	rs11105354	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q21.33	ATP2B1	rs11105354-A	0.84	3E-20		0.459	[0.36-0.56] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs111337717-?	NR	1E-27				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs111337717-?	NR	1E-23	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs111337717-?		2E-24	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs111337717-?	NR	3E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs111337717-?	NR	2E-23				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs111337717-?	NR	4E-24				Affymetrix, Illumina [18800000] (imputed)	N
1271	chr12	90037505	90037506	rs111337717	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs111337717-?	NR	4E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q21.33		rs12579302-?	NR	7E-70				NR [~ 8900000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.63	8E-21	(Japanese)	0.7287	[0.58-0.88] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.6261	6E-14	(Japanese)	0.4042	[0.3-0.51] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.6261	3E-17	(Japanese)	0.4641	[0.36-0.57] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.6261	1E-6	(Japanese)	0.0671	[0.04-0.094] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.6261	3E-11	(Japanese)	0.3318	[0.23-0.43] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.33	ATP2B1	rs12579302-A	0.78	1E-164	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Systolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.65	1E-17		0.94	[0.74-1.14] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Mean arterial pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	12q21.33	ATP2B1	rs12579302-A	0.66	1E-17		0.68	[0.54-0.82] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1272	chr12	90050502	90050503	rs12579302	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	12q21.33	NR	rs12579302-?	NR	4E-7				Affymetrix [NR]	N
1272	chr12	90050502	90050503	rs12579302	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	12q21.33	NR	rs12579302-?	NR	3E-7				Affymetrix [NR]	N
1272	chr12	90058841	90058842	rs111478946	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	NR	rs111478946-A	0.3408	1E-31	(East Asian)	0.8159	[0.68-0.95] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90058841	90058842	rs111478946	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	NR	rs111478946-A	0.3408	3E-27	(East Asian)	0.5305	[0.43-0.63] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90058841	90058842	rs111478946	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	NR	rs111478946-A	0.3411	1E-18	(East Asian)	0.3863	[0.3-0.47] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90058841	90058842	rs111478946	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	ATP2B1	rs111478946-A	0.21	2E-42	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90058841	90058842	rs111478946	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	ATP2B1	rs111478946-A	0.21	2E-48	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q21.33	ATP2B1	rs17249754-A	0.27	4E-9		0.87	[0.83-0.91]	Affymetrix [NR]	N
1272	chr12	90060585	90060586	rs17249754	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Hypertension	8,842 Korean ancestry individuals	NA	12q21.33	ATP2B1	rs17249754-?		3E-7				NR [327872]	N
1272	chr12	90060585	90060586	rs17249754	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.37	4E-21	(Japanese)	0.7363	[0.58-0.89] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3732	4E-14	(Japanese)	0.4071	[0.3-0.51] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3732	2E-17	(Japanese)	0.47	[0.36-0.58] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3732	9E-7	(Japanese)	0.0681	[0.041-0.095] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3732	1E-11	(Japanese)	0.3367	[0.24-0.43] unit decrease	Illumina [6200000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q21.33	ATP2B1	rs17249754-?	NR	5E-85				Affymetrix, Illumina [18800000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q21.33	ATP2B1	rs17249754-?		6E-57				Affymetrix, Illumina [18800000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.157	7E-20	(EA, initial)	0.903	[0.71-1.1] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.157	1E-10	(EA, initial)	0.411	[0.29-0.54] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.157	1E-16	(EA, initial)	0.499	[0.38-0.62] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q21.33	ATP2B1	rs17249754-A	0.1985	8E-23		0.0476	unit decrease	Illumina [242296]	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3534	8E-20		1.0728	[0.84-1.3] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3457	3E-17	(East Asians)	1.3936	[1.07-1.72] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3483	3E-9	(East Asians)	0.6156	[0.41-0.82] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3434	2E-16	(East Asians)	0.9618	[0.73-1.19] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.3532	9E-15		0.5308	[0.4-0.66] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.342	5E-13	(East Asians)	0.7397	[0.54-0.94] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.64	4E-12		1.03	[0.74-1.32] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	12q21.33	ATP2B1	rs17249754-G	0.64	2E-8				Affymetrix, Illumina [2485448] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.64	2E-10		0.52	[0.36-0.68] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.35	7E-15	(MAP)	0.8	[0.6-1] mm of mercury decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.89	6E-10	(Pulse Pressure)	0.392	[0.27-0.52] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.89	1E-17	(Mean Arterial Pressure)	0.557	[0.43-0.69] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.64	8E-20	(Systolic)	1.17	[0.92-1.42] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q21.33	ATP2B1	rs17249754-G	0.64	2E-13	(Diastolic)	0.58	[0.42-0.74] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.37	3E-6	(DBP)	0.63	[0.37-0.89] mm Hg decrease	Affymetrix [2156535] (imputed)	N
1272	chr12	90060585	90060586	rs17249754	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q21.33	ATP2B1	rs17249754-A	0.37	1E-7	(SBP)	1.06	[0.67-1.45] mm Hg decrease	Affymetrix [2156535] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.63	5E-21	(Japanese)	0.7325	[0.58-0.88] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.6258	7E-14	(Japanese)	0.4023	[0.3-0.51] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.6258	1E-17	(Japanese)	0.4693	[0.36-0.58] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.6258	1E-6	(Japanese)	0.0673	[0.04-0.095] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.6258	1E-11	(Japanese)	0.3377	[0.24-0.44] unit increase	Illumina [6200000] (imputed)	N
1272	chr12	90069275	90069276	rs11105364	28348047	Li C	2017-04-01	Circ Cardiovasc Genet	Genome-Wide Association Study Meta-Analysis of Long-Term Average Blood Pressure in East Asians.	Diastolic blood pressure (long-term average)	18,422 East Asian ancestry individuals	up to 46,629 European ancestry individuals	12q21.33	ATP2B1	rs11105364-T	0.65	1E-17		0.54	[0.42-0.66] mmHg increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1272	chr12	90070819	90070823	rs143087380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q21.33		rs143087380-C	0.620889365	6E-10		0.08525185	[0.058-0.112] unit decrease	Illumina [13427135] (imputed)	N
1272	chr12	90070822	90070823	rs11105365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q21.33		rs11105365-C	0.604809257	5E-8		0.046378553	[0.03-0.063] unit increase	Illumina [13134967] (imputed)	N
1272	chr12	90072075	90072076	rs73437358	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	ATP2B1	rs73437358-A	0.16	1E-16	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90074440	90074441	rs11105368	28273873	Park YM	2017-03-05	Nutrients	Interaction between Single Nucleotide Polymorphism and Urinary Sodium, Potassium, and Sodium-Potassium Ratio on the Risk of Hypertension in Korean Adults.	Hypertension	8,839 Korean ancestry individuals.	NA	12q21.33	ATP2B1	rs11105368-?	0.624	2E-7		1.23		Affymetrix [1291657] (imputed)	N
1272	chr12	90081187	90081188	rs7136259	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q21.33	ATP2B1	rs7136259-T	0.12	5E-8		0.88	[0.84-0.92]	Affymetrix [NR]	N
1272	chr12	90081187	90081188	rs7136259	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Hypertension	8,842 Korean ancestry individuals	NA	12q21.33	ATP2B1	rs7136259-?		4E-7				NR [327872]	N
1272	chr12	90081187	90081188	rs7136259	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	12q21.33	ATP2B1	rs7136259-T	0.39	6E-10		1.11	[1.08-1.15]	Affymetrix [~ 2200000] (imputed)	N
1272	chr12	90088789	90088790	rs10858917	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	ATP2B1, LOC338758	rs10858917-A	0.79	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90088828	90088829	rs11105377	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q21.33	NR	rs11105377-T	0.60046	4E-11		0.012737	[0.009-0.0165] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1272	chr12	90090740	90090741	rs11105378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	12q21.33		rs11105378-T	NR	1E-10		0.0727	[0.051-0.095] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1272	chr12	90090740	90090741	rs11105378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12q21.33		rs11105378-T	NR	4E-8		0.054	[0.035-0.073] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
1272	chr12	90090866	90090867	rs12230074	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.33	ATP2B1	rs12230074-A	0.83	3E-170	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90091781	90091782	rs4842676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	12q21.33		rs4842676-C	0.633434079	3E-8		0.06978852	[0.045-0.095] unit decrease	Illumina [13429980] (imputed)	N
1272	chr12	90091781	90091782	rs4842676	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	ATP2B1, LOC338758	rs4842676-C	0.82	4E-19	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90095796	90095797	rs11105380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	12q21.33		rs11105380-A	0.267174	2E-11		0.0367819	[0.026-0.048] unit decrease	Illumina [13468899] (imputed)	N
1272	chr12	90095796	90095797	rs11105380	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	12q21.33	ATP2B1, LINC00936	rs11105380-?	NR	6E-11		0.04597	[0.032-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
1272	chr12	90106834	90106835	rs11105381	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	12q21.33	NR	rs11105381-A	0.1879	1E-7		1.1946	[0.75-1.63] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1272	chr12	90110781	90110782	rs1980235	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q21.33	LINC00936, LOC338758	rs1980235-A	0.68	9E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90113069	90113070	rs7299436	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q21.33	RN5S365	rs7299436-G	0.157439	5E-14		0.062372733	[0.046-0.079] unit decrease	Affymetrix [7288503] (imputed)	N
1272	chr12	90113069	90113070	rs7299436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q21.33	LINC00936, LOC338758	rs7299436-T	0.85	2E-32	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90113069	90113070	rs7299436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	12q21.33	LINC00936, LOC338758	rs7299436-T	0.85	2E-19	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90113069	90113070	rs7299436	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q21.33	LINC00936, LOC338758	rs7299436-T	0.85	4E-18	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1272	chr12	90125088	90125089	rs10858922	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	12q21.33	ATP2B1	rs10858922-A	0.2784	2E-9		0.015018993	[0.01-0.02] unit increase	Affymetrix [11514463] (imputed)	N
1272	chr12	90136479	90136480	rs143993772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs143993772-?	NR	5E-41				NR [~ 8900000] (imputed)	N
1272	chr12	90156376	90156377	rs4842687	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	12q21.33	NR	rs4842687-A	0.721672562	3E-6		1.0933417	[1.05-1.14]	Affymetrix, Illumina [20400945] (imputed)	N
1272	chr12	90156376	90156377	rs4842687	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q21.33	NR	rs4842687-A	NR	2E-17		1.064	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1272	chr12	90156376	90156377	rs4842687	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	12q21.33	NR	rs4842687-A	0.789	2E-6		1.12	[1.07-1.17]	Affymetrix, Illumina [10186136] (imputed)	N
1272	chr12	90156376	90156377	rs4842687	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	12q21.33	intergenic	rs4842687-A	0.756	6E-12		1.143	NR	Illumina [7742602] (imputed)	N
1272	chr12	90160530	90160530	rs5799921	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	12q21.33	RNU6-148P	rs5799921-GA	NR	1E-6		1.08	[NR]	Illumina [20370935] (imputed)	N
1272	chr12	90160530	90160530	rs5799921	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q21.33	RNU6-148P	rs5799921-GA	0.68	7E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1272	chr12	90166745	90166749	rs34765902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q21.33		rs34765902-G	NR	4E-15		0.0238	[0.018-0.03] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1273	chr12	90189147	90189148	rs79079378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.33		rs79079378-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1273	chr12	90213069	90213070	rs12427047	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q21.33	ATP2B1	rs12427047-C	0.757298	9E-12		0.0109098	[0.0078-0.014] unit increase	Affymetrix [12370749]	N
1273	chr12	90213069	90213070	rs12427047	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.33	NR	rs12427047-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1273	chr12	90223834	90223835	rs17192198	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	12q21.33	LINC00936, LINC00615	rs17192198-?	NR	8E-6				Affymetrix [394222]	N
1273	chr12	90223925	90223926	rs73202945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.33		rs73202945-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1273	chr12	90224713	90224714	rs117483990	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q21.33	Intergenic	rs117483990-T	NR	1E-9	(between families)	6.07	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1273	chr12	90228122	90228123	rs79432630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q21.33		rs79432630-T	NR	2E-9		0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1273	chr12	90228122	90228123	rs79432630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q21.33		rs79432630-T	0.100546	7E-10		0.0208209	[0.014-0.027] unit increase	Illumina [13479295] (imputed)	N
1273	chr12	90228122	90228123	rs79432630	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q21.33	LINC00936, LINC00615	rs79432630-?	NR	6E-10		0.029721051	[0.02-0.039] unit increase	Illumina [27896057] (imputed)	N
1273	chr12	90231309	90231310	rs2722224	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	12q21.33	LOC338758	rs2722224-?	NA	7E-6		0.335	[0.19-0.48] unit decrease	Illumina [6690240] (imputed)	N
1273	chr12	90252499	90252500	rs2408058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.33		rs2408058-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1273	chr12	90265825	90265826	rs12321461	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	12q21.33	RP11-654D12.2	rs12321461-C	NR	1E-6		3.26515	[2-4.53] unit decrease	Illumina [NR] (imputed)	N
1273	chr12	90273297	90273298	rs2553100	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q21.33	ATP2B1	rs2553100-A	0.4115	3E-14		1.0292		Affymetrix [11880941] (imputed)	N
1273	chr12	90273926	90273927	rs7975788	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q21.33	NR	rs7975788-?	NR	5E-6	(male)	0.13288	[0.076-0.19] unit increase	Affymetrix [7794483] (imputed)	N
1273	chr12	90273926	90273927	rs7975788	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q21.33	NR	rs7975788-?	NR	2E-8		0.13292	[0.086-0.18] unit increase	Affymetrix [7794483] (imputed)	N
1273	chr12	90274620	90274621	rs56391951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q21.33	RP11-654D12.2	rs56391951-A	0.272713	5E-9		0.014709606	[0.0098-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
1273	chr12	90276189	90276190	rs117963861	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	12q21.33		rs117963861-G	0.005323	2E-9		0.28	[0.19-0.37] unit increase	NR [11842647] (imputed)	N
1273	chr12	90299977	90299978	rs4573745	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	12q21.33	LOC338758	rs4573745-A	0.544462	2E-8		0.0589	[0.038-0.079] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1273	chr12	90305778	90305779	rs7965584	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	12q21.33	ATP2B1	rs7965584-G	0.29	1E-16		0.07	[0.005-0.009] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1274	chr12	90316931	90316932	rs117996975	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	12q21.33		rs117996975-T	0.03595	8E-6		0.4698	[0.3375-0.6539]	Affymetrix [7975321] (imputed)	N
1274	chr12	90319780	90319781	rs111342256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.33		rs111342256-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1274	chr12	90326918	90326919	rs11105466	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	12q21.33	NR	rs11105466-A	0.42	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1274	chr12	90328832	90328833	rs11105468	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-unrelated)	1,070 European ancestry cases, 4,118 European ancestry controls	Up to 1,034 European ancestry cases, Up to 1,645 European ancestry controls	12q21.33	intergenic	rs11105468-A	0.292	2E-7		1.23	[1.14-1.33]	Illumina [8129384] (imputed)	N
1274	chr12	90328832	90328833	rs11105468	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	12q21.33	intergenic	rs11105468-A	0.292	7E-8		1.28	[1.17-1.40]	Illumina [8129524] (imputed)	N
1274	chr12	90328832	90328833	rs11105468	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	12q21.33	intergenic	rs11105468-A	0.292	3E-11	(Overall)	1.25	[1.17-1.33]	Illumina [up to 8129553] (imputed)	N
1274	chr12	90334828	90334829	rs10777212	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q21.33	ATP2B1	rs10777212-T	0.348	5E-12	(European)	0.0454	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1274	chr12	90334828	90334829	rs10777212	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q21.33	ATP2B1	rs10777212-T	0.3455	5E-14		0.0452	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1274	chr12	90337045	90337046	rs4842697	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	12q21.33	ATP2B1	rs4842697-G	0.57	3E-6		0.057	[0.033-0.081] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
1274	chr12	90337045	90337046	rs4842697	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	12q21.33	ATP2B1	rs4842697-G	0.57	3E-6		0.057	[0.033-0.081] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
1274	chr12	90351661	90351662	rs4842700	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.33	LOC105369891	rs4842700-A	0.206279	1E-13		0.0183057	[0.013-0.023] unit decrease	NR [13737936] (imputed)	N
1274	chr12	90351661	90351662	rs4842700	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs4842700-?	NR	3E-63		0.0409861	[0.036-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
1274	chr12	90356490	90356491	rs113516553	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.33	NR	rs113516553-?	NR	6E-6		10.02	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1274	chr12	90359373	90359374	rs113983785	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.33	NR	rs113983785-?	NR	6E-6		10.02	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1274	chr12	90360185	90360186	rs111371067	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.33	NR	rs111371067-?	NR	6E-6		10.02	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1274	chr12	90360363	90360364	rs4503596	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12q21.33	NA	rs4503596-G		2E-11		0.0135406	[0.0096-0.0175] unit increase	Illumina [13288253] (imputed)	N
1274	chr12	90361621	90361622	rs138517179	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q21.33	NR	rs138517179-?	NR	6E-6		10.02	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1274	chr12	90364450	90364451	rs11105475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q21.33		rs11105475-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1274	chr12	90380388	90380389	rs7313474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q21.33		rs7313474-C	NR	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1274	chr12	90419191	90419192	rs10858944	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs10858944-?	NR	5E-154		0.0544872	[0.05-0.059] unit decrease	Affymetrix [20259828] (imputed)	N
1274	chr12	90419191	90419192	rs10858944	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369891	rs10858944-G	0.603262	1E-31	(women)	0.053131	[0.044-0.062] unit decrease	NR [17166351] (imputed)	N
1274	chr12	90419191	90419192	rs10858944	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369891	rs10858944-G	0.601871	8E-63		0.0566901	[0.05-0.063] unit decrease	NR [17166351] (imputed)	N
1274	chr12	90419191	90419192	rs10858944	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369891	rs10858944-G	0.600279	1E-30	(men)	0.0615686	[0.051-0.072] unit decrease	NR [17166351] (imputed)	N
1274	chr12	90419893	90419894	rs11324040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q21.33		rs11324040-G	NR	2E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1274	chr12	90420679	90420680	rs76016857	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs76016857-?	NR	2E-9		0.0293516	[0.02-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1274	chr12	90430675	90430676	rs188911122	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	12q21.33	intergenic	rs188911122-C	0.0092	6E-9		0.978	[0.65-1.31] mmHg increase	Affymetrix [NR] (imputed)	N
1274	chr12	90430675	90430676	rs188911122	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	12q21.33	intergenic	rs188911122-C	0.0092	6E-7		0.5988	[0.36-0.83] mmHg increase	Affymetrix [NR] (imputed)	N
1275	chr12	90441214	90441215	rs10777221	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q21.33	NR	rs10777221-T	0.6063	1E-10		0.0373	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1275	chr12	90441214	90441215	rs10777221	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q21.33	NR	rs10777221-T	0.6032	5E-8	(European)	0.0346	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1275	chr12	90442000	90442001	rs7488974	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q21.33		rs7488974-A	0.3976	2E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1275	chr12	90442000	90442001	rs7488974	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.33	LOC105369891	rs7488974-G	0.606933	2E-112		0.0460214	[0.042-0.05] unit decrease	NR [13737936] (imputed)	N
1275	chr12	90443481	90443482	rs10858945	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	12q21.33	LOC643153	rs10858945-A	NR	6E-6		0.171	[0.087-0.255] unit increase	Illumina [~ 2740000] (imputed)	N
1275	chr12	90444041	90444042	rs10858946	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	12q21.33	LOC643153	rs10858945-A	NR	6E-6		0.179	[0.093-0.265] unit increase	Illumina [~ 2740000] (imputed)	N
1275	chr12	90452977	90452978	rs7959983	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q21.33	ATP2B1, CCER1	rs7959983-C	0.40449999999999997	5E-16		1.0310341		Affymetrix [11880941] (imputed)	N
1275	chr12	90452977	90452978	rs7959983	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q21.33	ATP2B1, CCER1	rs7959983-C	0.40449999999999997	5E-16		1.0303515		Affymetrix [11880941] (imputed)	N
1275	chr12	90452977	90452978	rs7959983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q21.33		rs7959983-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1275	chr12	90455179	90455180	rs7303035	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q21.33	NR	rs7303035-T	0.504745	9E-17		0.0174728	[0.013-0.022] unit increase	NR [NR]	N
1275	chr12	90460255	90460256	rs7980592	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q21.33	AC009522.1	rs7980592-A	0.2929	1E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1275	chr12	90466042	90466043	rs6538223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.33		rs6538223-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs10858948-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs10858948-?	NR	1E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs10858948-?	NR	4E-10				Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs10858948-?		7E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs10858948-?	NR	5E-15				Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q21.33	ATP2B1	rs10858948-?	NR	2E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs10858948-?	NR	6E-14				Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90478650	90478651	rs10858948	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q21.33	ATP2B1	rs10858948-?	NR	2E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1275	chr12	90487780	90487781	rs554620424	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs554620424-?	NR	8E-61		0.0392116	[0.034-0.044] unit increase	Affymetrix [20259828] (imputed)	N
1275	chr12	90514077	90514078	rs10858956	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs10858956-?	NR	6E-50		0.0539586	[0.047-0.061] unit decrease	Affymetrix [20259828] (imputed)	N
1275	chr12	90518448	90518449	rs73212053	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q21.33	NR	rs73212053-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1275	chr12	90533914	90533915	rs55849728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.33		rs55849728-?	NR	2E-175				NR [~ 8900000] (imputed)	N
1275	chr12	90533914	90533915	rs55849728	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs55849728-?	NR	7E-157		0.0547485	[0.051-0.059] unit decrease	Affymetrix [20259828] (imputed)	N
1275	chr12	90537269	90537270	rs7313782	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q21.33	intergenic	rs7313782-A	0.2666	3E-11		0.2709	[0.19-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
1275	chr12	90538754	90538755	rs7961385	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	12q21.33	ATP2B1	rs7961385-T	0.19	6E-6	(African American)	0.23	0.13-0.33 unit decrease	Illumina [NR] (imputed)	N
1275	chr12	90546387	90546388	rs10858963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q21.33		rs10858963-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1275	chr12	90551578	90551579	rs2408224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q21.33	NR	rs2408224-G	0.740773	9E-12		0.015035	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1275	chr12	90559121	90559122	rs141885450	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q21.33	ENSG00000257194	rs141885450-?	NR	2E-8		0.0094375	[0.0062-0.0127] unit increase	Affymetrix [805426] (imputed)	N
1275	chr12	90562016	90562017	rs4842509	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q21.33	ATP2B1, CCER1	rs4842509-T	0.3976	1E-14		1.0295		Affymetrix [11880941] (imputed)	N
1275	chr12	90563552	90563562	rs144048463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q21.33		rs144048463-G	NR	6E-9		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1275	chr12	90564294	90564295	rs17836934	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q21.33	NR	rs17836934-A	0.6091	3E-8		0.0328	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1275	chr12	90564743	90564744	rs202234992	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q21.33		rs202234992-?	NR	7E-27		0.0810771	[0.066-0.096] unit decrease	Affymetrix [20259828] (imputed)	N
1275	chr12	90564743	90564744	rs202234992	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369893	rs202234992-C	0.963239	6E-10	(women)	0.105139	[0.069-0.141] unit decrease	NR [17166351] (imputed)	N
1275	chr12	90564743	90564744	rs202234992	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369893	rs202234992-C	0.96293	1E-16		0.109594	[0.084-0.135] unit decrease	NR [17166351] (imputed)	N
1275	chr12	90564743	90564744	rs202234992	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q21.33	LOC105369893	rs202234992-C	0.962575	7E-9	(men)	0.120494	[0.082-0.159] unit decrease	NR [17166351] (imputed)	N
1275	chr12	90567025	90567026	rs10858966	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q21.33	ATP2B1	rs10858966-C	0.2933	6E-20		0.254	[0.2-0.31] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1276	chr12	90581990	90581991	rs139325884	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.33	NR	rs139325884-T	0.01742	2E-9	(CYP1A2)	0.5014	NR unit increase	Illumina [1671387] (imputed)	N
1276	chr12	90599852	90599853	rs1583700	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	12q21.33	intergenic	rs1583700-?	NR	4E-9		0.0160805	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1276	chr12	90609016	90609017	rs10745527	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	12q21.33	dessert	rs10745527-G	0.28	5E-6	(vWF levels)	0.16	[0.10-0.22] IU/dL increase	Illumina [442728]	N
1276	chr12	90633506	90633507	rs2579103	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q21.33	LOC338758	rs2579103-C	0.26	4E-7	(EA)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1276	chr12	90633506	90633507	rs2579103	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q21.33	LOC338758	rs2579103-C	0.26	3E-7		0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1276	chr12	90633506	90633507	rs2579103	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q21.33	LOC338758	rs2579103-C	0.259	5E-6	(EA, women)	0.024	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1276	chr12	90643523	90643524	rs10777237	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q21.33	NR	rs10777237-T	NR	5E-7		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1276	chr12	90643523	90643524	rs10777237	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q21.33	LOC100287505	rs10777237-T	0.275531911285243	2E-10		0.021337537	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1276	chr12	90643598	90643599	rs2731275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q21.33		rs2731275-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1276	chr12	90681146	90681147	rs79655816	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	12q21.33	RP11-753N8.1	rs79655816-G	0.008	2E-7		3.47	[2.17-5.54]	Illumina [8672852] (imputed)	N
1276	chr12	90684902	90684903	rs117026681	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	12q21.33	NR	rs117026681-G		6E-6		0.4687	[0.27-0.67] SD units decrease	NR [10700000] (imputed)	N
1277	chr12	90703110	90703111	rs865438	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.33	LOC105369893	rs865438-C	0.196367	4E-10		0.0146555	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
1277	chr12	90721816	90721817	rs73198375	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	12q21.33	Intergenic	rs73198375-?	NR	2E-6		1.17	[1.11-1.24]	Affymetrix, Illumina [39235000] (imputed)	N
1277	chr12	90725381	90725382	rs825962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.33		rs825962-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1277	chr12	90726782	90726783	rs56331133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.33		rs56331133-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1277	chr12	90767158	90767159	rs1696058	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q21.33	CCER1	rs1696058-T	0.402699	9E-9		0.00839094	[0.0055-0.0112] unit increase	Affymetrix [12370749]	N
1277	chr12	90769127	90769128	rs1310679	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	12q21.33	intergenic	rs1310679-G	0.503714	9E-6		0.172678	[0.097-0.248] unit increase	NR [7263501] (imputed)	N
1277	chr12	90776890	90776891	rs1368013	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	12q21.33	NR	rs1368013-?		9E-6		0.08	unit decrease	Illumina [1211988] (imputed)	N
1277	chr12	90788140	90788141	rs1368011	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	12q21.33	NR	rs1368011-?		9E-6		0.08	unit decrease	Illumina [1211988] (imputed)	N
1277	chr12	90800252	90800263	rs1178378997	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.33	NR	rs1178378997-T	0.01045	2E-8	(ANXA6)	0.5247	NR unit increase	Illumina [1671387] (imputed)	N
1278	chr12	90943834	90943835	rs537841689	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	12q21.33	intergenic	rs537841689-T	0.0004	2E-8		7.954	NR	Affymetrix, Illumina [39127678] (imputed)	N
1278	chr12	90952882	90952883	rs145396880	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q21.33		rs145396880-?	NR	1E-5		1.2029945	[1.10837605081614-1.30569024534777]	Illumina [7827597] (imputed)	N
1279	chr12	90990840	90990840	rs143821383	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q21.33		rs143821383-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1279	chr12	91024915	91024916	rs763564	25387707	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of antisaccade eye tracking error rate: a genome-wide association study.	Anti-saccade response	4,469 European ancestry twins and their parents	NA	12q21.33	intergenic	rs763564-?	NR	9E-6		0.031	[0.017-0.045] unit increase	Illumina [527829]	N
1279	chr12	91031635	91031636	rs77028233	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	12q21.33	LINC00936, LINC00615	rs77028233-A	0.058610026	8E-6		1.3694347	[1.19257259-1.572525982]	Illumina [10439017] (imputed)	N
1279	chr12	91077507	91077508	rs1847461	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	12q21.33	intergenic	rs1847461-?	0.94	8E-6	(CIGSTAT)	1.8	[NR]	Illumina [~ 518000]	N
1280	chr12	91117628	91117629	rs10859040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q21.33		rs10859040-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs12370487-C	0.208887	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q21.33	NR	rs12370487-C	0.27312	6E-15		0.016774	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs12370487-C	0.208977	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q21.33	NR	rs12370487-C	0.273119	1E-12		0.015438	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q21.33	NR	rs12370487-C	0.273112	3E-13		0.015937	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1280	chr12	91130883	91130884	rs12370487	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q21.33	intergenic	rs12370487-C		1E-10		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1280	chr12	91133991	91133991	rs11370816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q21.33		rs11370816-CT	NR	4E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1280	chr12	91144039	91144040	rs10859044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q21.33		rs10859044-G	0.282984	7E-12		0.016843366	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1280	chr12	91144039	91144040	rs10859044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q21.33		rs10859044-G	0.282978	1E-11		0.016686214	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1280	chr12	91153720	91153721	rs11105799	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	12q21.33	CCER1	rs11105799-?	NR	2E-12		0.028	[0.021-0.036] unit increase	Illumina [12039491] (imputed)	N
1280	chr12	91154206	91154207	rs7954238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs7954238-C	0.2162	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1280	chr12	91158394	91158394	rs34175820	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q21.33	AC084365.2	rs34175820-G	0.7145	6E-17		0.0176	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1280	chr12	91171088	91171089	rs62637830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q21.33		rs62637830-T	NR	4E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1280	chr12	91180018	91180019	rs2089111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q21.33		rs2089111-G	NR	8E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1280	chr12	91180018	91180019	rs2089111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q21.33		rs2089111-G	0.26659	2E-12		0.017783973	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1280	chr12	91180018	91180019	rs2089111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q21.33		rs2089111-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1281	chr12	91237919	91237920	rs11105839	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q21.33	NA	rs11105839-A	0.3729	1E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
1281	chr12	91237919	91237920	rs11105839	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q21.33	NR	rs11105839-T	NR	2E-7		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1281	chr12	91237919	91237920	rs11105839	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q21.33	LINC00936, LINC00615	rs11105839-A	0.36	3E-8		0.013	[0.0091-0.0169] unit decrease	Illumina [6108953] (imputed)	N
1281	chr12	91243528	91243529	rs11836880	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	12q21.33		rs11836880-G	NR	1E-7		0.0144972	[0.009-0.02] years decrease	NR [7400000] (imputed)	N
1281	chr12	91243528	91243529	rs11836880	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	12q21.33		rs11836880-G	NR	3E-6		0.00797334	[0.0046-0.0113] years increase	NR [7400000] (imputed)	N
1281	chr12	91243528	91243529	rs11836880	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	12q21.33		rs11836880-G	NR	2E-12		0.0152177	[0.011-0.02] years increase	NR [7400000] (imputed)	N
1281	chr12	91243528	91243529	rs11836880	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	12q21.33		rs11836880-G	NR	1E-10		0.053265896	[0.037-0.069] years decrease	NR [7400000] (imputed)	N
1281	chr12	91277331	91277332	rs75062117	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	12q21.33	LINC00615	rs75062117-?	NR	5E-7	(African)			Illumina [4404269] (imputed)	N
1281	chr12	91310018	91310019	rs12828102	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q21.33	NR	rs12828102-G	0.93705655	8E-6		0.1645	[0.092-0.237] unit increase	Illumina [up to 1980188] (imputed)	N
1281	chr12	91336704	91336705	rs79632615	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCER1	rs79632615-?	NR	3E-8	(female)	1.45588	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1282	chr12	91443559	91443560	rs11105949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q21.33	NR	rs11105949-T	0.0122	4E-10	(FERMT2)	0.08775	NR unit increase	Illumina [1671387] (imputed)	N
1282	chr12	91444487	91444488	rs11105952	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q21.33	NR	rs11105952-?	NR	8E-8				Affymetrix [NR]	N
1282	chr12	91447522	91447523	rs11105956	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	12q21.33	NR	rs11105956-?	NR	6E-6	(additive)	1.3513513	[1.18-1.54]	Affymetrix [NR]	N
1282	chr12	91473797	91473798	rs10777288	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	12q21.33	KERA, LUM	rs10777288-A	NR	5E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1282	chr12	91474421	91474422	rs991427	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12q21.33	KERA, LUM	rs991427-T	0.14	2E-7	(Oz alcohol/week)	0.412	[0.14-0.68] unit increase	Affymetrix [2500000] (imputed)	N
1282	chr12	91477113	91477114	rs4494364	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	12q21.33	KERA, LUM	rs4494364-A	0.14	2E-7	(drinks/week)	0.142	[0.058-0.226] unit increase	Affymetrix [2500000] (imputed)	N
1282	chr12	91487516	91487517	rs187607716	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.33	Intergenic	rs187607716-G	1.0	1E-6	(AA)	0.451	unit increase	Illumina [NR] (imputed)	N
1282	chr12	91487516	91487517	rs187607716	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.33	Intergenic	rs187607716-G	1.0	3E-7	(AA)	2.412	NR unit increase	Illumina [NR] (imputed)	N
1283	chr12	91497316	91497317	rs11478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.33		rs11478-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1283	chr12	91516146	91516147	rs57812022	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q21.33	LUM, DCN	rs57812022-G	0.9357	2E-9		0.1661	[0.11-0.22] unit increase	Affymetrix [~ 11900000] (imputed)	N
1283	chr12	91527180	91527181	rs7308752	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	12q21.33	DCN	rs7308752-?	NA	4E-15		2.86	[2.15-3.57] unit increase	Affymetrix [5541230] (imputed)	N
1283	chr12	91527180	91527181	rs7308752	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	12q21.33	DCN	rs7308752-A	0.82	1E-10		3.08	[2.14-4.02] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr12	91539783	91539784	rs1803343	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LUM	5,349 Icelandic ancestry individuals	NA	12q21.33		rs1803343-C	0.01618	1E-18		0.607166	[0.47-0.74] unit decrease	Illumina [7506463] (imputed)	N
1283	chr12	91548216	91548217	rs55887639	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q21.33	DCN	rs55887639-T	0.9421875	3E-7	(DCN, 2666_53_2)	0.2664955	[0.16-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1284	chr12	91622253	91622254	rs1280632	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q21.33	DCN	rs1280632-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
1285	chr12	91804732	91804733	rs10859140	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.33	DCN	rs10859140-G	0.395815	3E-9		0.0112005	[0.0075-0.0149] unit decrease	NR [13737936] (imputed)	N
1285	chr12	91825557	91825558	rs11835187	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	12q21.33	NR	rs11835187-C	0.793253	6E-6		1.1312217	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1285	chr12	91825973	91825974	rs190262953	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.33	Intergenic	rs190262953-T	1.0	3E-6	(AA)	0.427	unit increase	Illumina [NR] (imputed)	N
1285	chr12	91825973	91825974	rs190262953	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q21.33	Intergenic	rs190262953-T	1.0	2E-6	(AA)	2.16	NR unit increase	Illumina [NR] (imputed)	N
1286	chr12	91896411	91896412	rs11106179	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	12q21.33	NR	rs11106179-A	0.2	3E-6	(15-18 months)	0.087	[0.05-0.124] unit decrease	Illumina [2449665] (imputed)	N
1286	chr12	91903789	91903790	rs6538281	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.33	LUM	rs6538281-?	NR	3E-6	(leucine)	0.168386	[0.098-0.239] unit increase	Affymetrix [at least 2500000] (imputed)	N
1286	chr12	91961616	91961617	rs191175118	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q21.33	NR	rs191175118-?	NR	4E-8				Illumina [7760689] (imputed)	N
1286	chr12	91972171	91972172	rs12298388	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	12q21.33		rs12298388-C	0.730976	8E-6		0.00938347	[0.0052-0.0135] unit increase	Illumina [13900000] (imputed)	N
1286	chr12	91980373	91980374	rs10777317	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q21.33	DCN	rs10777317-?	0.60	5E-6	(Dominant)	1.12	[1.07-1.18]	Affymetrix [319222]	N
1286	chr12	91995501	91995502	rs4534653	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	12q21.33		rs4534653-A	0.519546	7E-6		0.00855704	[0.0048-0.0123] unit decrease	Illumina [13900000] (imputed)	N
1286	chr12	92000327	92000328	rs1489900	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	12q21.33	NR	rs1489900-C	0.3586	2E-6		0.1511	[0.09-0.213] unit decrease	Illumina [10677593] (imputed)	N
1287	chr12	92022352	92022353	rs2408564	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q21.33	BTG1	rs2408564-?	NR	1E-6	(choline)	0.24912411	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1287	chr12	92069711	92069712	rs147404945	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q21.33	NR	rs147404945-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1287	chr12	92073557	92073558	rs6538292	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	12q21.33	NR	rs6538292-G	0.623	2E-8		0.010414693	[0.0068-0.0141] unit decrease	Affymetrix [NR] (imputed)	N
1287	chr12	92112417	92112418	rs1873982	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	12q21.33	NR	rs1873982-A	0.5955	4E-8		1.0340744	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1287	chr12	92133625	92133626	rs78670237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q21.33	NR	rs78670237-?		1E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1288	chr12	92145306	92145307	rs7967550	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.33		rs7967550-A	0.3998	2E-9		0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr12	92154269	92154270	rs1389473	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q21.33		rs1389473-A	0.3723	2E-9	(conditional-joint)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1288	chr12	92154269	92154270	rs1389473	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	12q21.33	NR	rs1389473-A	0.3797	5E-9		0.013424284	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1288	chr12	92159556	92159557	rs7131944	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q21.33	ENSG00000258125	rs7131944-?	NR	3E-9		0.012889822	[0.0086-0.0171] unit increase	NR [7306098]	N
1288	chr12	92164301	92164302	rs10777332	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	12q21.33	intergenic	rs10777332-A	0.11	5E-6	(total cholesterol)	0.24	[0.14-0.34] mmol/L decrease	Illumina [316730]	N
1288	chr12	92170790	92170791	rs4842786	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q21.33	NR	rs4842786-A	0.584	2E-10		0.00852538	[0.0059-0.0112] unit decrease	NR [~ 9732723] (imputed)	N
1288	chr12	92170790	92170791	rs4842786	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	12q21.33	NR	rs4842786-A	0.584	3E-9		0.008797801	[0.0059-0.0117] unit decrease	NR [~ 10000000] (imputed)	N
1288	chr12	92237152	92237153	rs61925919	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	22,916 European ancestry cases, 32,504 European ancestry controls	NA	12q21.33	NR	rs61925919-A	0.195114	5E-6		1.08	[1.05-1.12]	Illumina [up to 8992756] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q21.33	BTG1	rs4240748-G	NR	4E-7	(EA)	1.0589855	[1.04-1.08]	Illumina [6627481] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q21.33	BTG1	rs4240748-G	NR	1E-9		1.0626993	[1.04-1.08]	Illumina [6627481] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12q21.33	BTG1	rs4240748-?	NR	2E-8		1.0570824	[1.04-1.08]	Illumina [8000000] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q21.33	BTG1	rs4240748-G	NR	5E-8		1.0548522	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q21.33	NR	rs4240748-G	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1288	chr12	92246785	92246786	rs4240748	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12q21.33	C12orf79	rs4240748-G	0.634	5E-8		1.0604454	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1288	chr12	92257132	92257133	rs10777342	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q21.33	NR	rs10777342-?	NR	2E-8		1.0531636	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1288	chr12	92269899	92269900	rs117468955	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	12q21.33		rs117468955-G	NR	3E-8		4.7225	[3.11-6.34] unit increase	Illumina [NR] (imputed)	N
1289	chr12	92305269	92305270	rs17019682	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	12q21.33	BTG1	rs17019682-?	0.17	2E-6	(AA)	1.47	[0.98-2.22]	Affymetrix, Illumina [2478304] (imputed)	N
1289	chr12	92312426	92312427	rs7973111	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	TMED109 abundance in stool	5,959 Finnish ancestry individuals	NA	12q21.33		rs7973111-A	0.0733345	5E-8		0.0595543	[0.038-0.081] unit increase	Illumina [7980478] (imputed)	N
1289	chr12	92375594	92375595	rs12146838	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q21.33	NR	rs12146838-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1290	chr12	92408284	92408285	rs10777373	25325441	Baik I	2015-07-01	Sleep	Associations of Sleep Apnea, NRG1 Polymorphisms, Alcohol Consumption, and Cerebral White Matter Hyperintensities: Analysis with Genome-Wide Association Data.	Obstructive sleep apnea	235 Korean ancestry cases, 235 Korean ancestry controls	NA	12q21.33	C12orf79	rs10777373-?		5E-6	(dominant model)	2.3809524	[1.64-3.45]	Affymetrix [319517] (imputed)	N
1290	chr12	92456576	92456577	rs76439972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q21.33		rs76439972-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1290	chr12	92498617	92498618	rs10859273	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	12q21.33	LOC256021	rs10859273-T	NR	1E-6		0.107701	[0.064-0.151] unit decrease	Illumina [at least 950000] (imputed)	N
1290	chr12	92505603	92505603	rs145489195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q21.33	C12orf79	rs145489195-GTAGAGGATGGCTTGAACCTAGGAAC	0.533022	9E-11		0.01549527	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr12	92512427	92512428	rs11106430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q21.33		rs11106430-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1290	chr12	92518679	92518680	rs10777378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q21.33	NR	rs10777378-A	0.47224	4E-27				Affymetrix, Illumina [19872809] (imputed)	N
1290	chr12	92518679	92518680	rs10777378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q21.33	NR	rs10777378-A	0.535724	1E-29		0.022488	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q21.33	LINC01619	rs7135535-G	0.549776	2E-12		0.0130263	[0.0094-0.0167] unit increase	NR [13737936] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q21.33		rs7135535-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	12q21.33	C12orf79	rs7135535-A	0.4494	1E-11		0.02432295	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	12q21.33	C12orf79	rs7135535-A	0.4495	2E-11		0.02430264	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	12q21.33	C12orf79	rs7135535-A	0.4494	1E-11		0.02426256	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	12q21.33	C12orf79	rs7135535-A	0.4495	4E-11		0.02384752	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr12	92519288	92519289	rs7135535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12q21.33	C12orf79	rs7135535-A	0.4495	2E-12		0.02527306	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1290	chr12	92521197	92521198	rs10859277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q21.33	C12orf79	rs10859277-T	0.536067	1E-13		0.01770885	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1290	chr12	92521197	92521198	rs10859277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q21.33		rs10859277-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1291	chr12	92562406	92562407	rs61745943	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	12q21.33	Intergenic	rs61745943-T		4E-6		0.071	[0.041-0.101] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1291	chr12	92572428	92572429	rs709228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q21.33		rs709228-T	NR	9E-18		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1291	chr12	92573860	92573861	rs75418803	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12q21.33	intergenic	rs75418803-?	NR	8E-6		0.197	[0.068-0.326] unit decrease	Illumina [at least 13000000] (imputed)	N
1291	chr12	92579099	92579100	rs4760384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q21.33	RP11-796E2.4	rs4760384-C	0.170789	5E-13		0.022883859	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr12	92579099	92579100	rs4760384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q21.33	RP11-796E2.4	rs4760384-C	0.170791	1E-11		0.021350127	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1291	chr12	92635840	92635841	rs80149000	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q22		rs80149000-?	NR	9E-6		0.6504939	[0.36-0.94] unit increase	Illumina [9842460] (imputed)	N
1292	chr12	92687032	92687033	rs416424	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	12q22	RPL21P106	rs416424-C	NR	1E-6		0.17618158	[0.11-0.25] unit increase	Affymetrix [9576485] (imputed)	N
1292	chr12	92718557	92718558	rs454217	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	12q22	NR	rs454217-?		2E-6				Illumina [1211988] (imputed)	N
1292	chr12	92747527	92747528	rs430437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q22		rs430437-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1292	chr12	92763079	92763080	rs420271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q22		rs420271-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1292	chr12	92780073	92780074	rs11106530	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	12q22	NR	rs11106530-?		3E-6				Illumina [892589]	N
1293	chr12	92864217	92864218	rs538508	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q22	CLLU1OS	rs538508-?	NR	4E-7	(methionine)	0.3830438	[0.23-0.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
1293	chr12	92890519	92890520	rs10219495	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q22	PLEKHG7	rs10219495-?	0.10	5E-6	(Additive)	1.14	[1.08-1.21]	Affymetrix [319222]	N
1294	chr12	92960449	92960450	rs1111258	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q22	LOC100507616	rs1111258-G	0.398794	5E-9		0.0110347	[0.0073-0.0147] unit decrease	NR [13737936] (imputed)	N
1294	chr12	92960904	92960905	rs7312919	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	12q22	NR	rs7312919-C	0.370775	4E-8		0.035583865	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1294	chr12	92960904	92960905	rs7312919	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q22	NR	rs7312919-C	NR	5E-10		6.225	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1294	chr12	92961174	92961174	rs34716983	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q22		rs34716983-?	NR	2E-10		0.0140742	[0.0098-0.0183] unit decrease	Affymetrix [20259828] (imputed)	N
1294	chr12	92963811	92963812	rs7961248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q22		rs7961248-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1294	chr12	92974741	92974742	rs4502027	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q22	NR	rs4502027-?	NR	3E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1294	chr12	92976973	92976973	rs11406665	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q22	NR	rs11406665-?	NR	2E-8	(left cerebellum white matter)			NR [9227495] (imputed)	N
1294	chr12	92987207	92987208	rs11829373	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	12q22	C12orf74	rs11829373-C	0.1	7E-6	(Age 20-60 years)	0.08	[0.045-0.115] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1295	chr12	93067869	93067870	rs17251689	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q22	C12orf74	rs17251689-C	NR	1E-8		5.678	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1295	chr12	93146988	93146989	rs142656079	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q22	NR	rs142656079-T	0.0122	3E-9	(CYP3A5)	0.1175	NR unit increase	Illumina [1671387] (imputed)	N
1295	chr12	93161708	93161709	rs7311319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q22		rs7311319-T	NR	5E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1295	chr12	93164935	93164936	rs10507017	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	12q22	NR	rs10507017-?	NR	3E-6		6.212	[3.72-8.7] unit decrease	Illumina [498648]	N
1295	chr12	93164935	93164936	rs10507017	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	12q22	NR	rs10507017-?	NR	2E-6		17.42	[10.51-24.33] unit decrease	Illumina [498648]	N
1295	chr12	93176204	93176205	rs17790352	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q22	NR	rs17790352-A	NR	1E-8		5.694	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1296	chr12	93207450	93207451	rs10859383	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q22	NR	rs10859383-?	NR	6E-7		5.005	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1296	chr12	93249530	93249531	rs140957346	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	12q22	EEA1	rs140957346-?	NR	4E-6				Illumina [2668805]	N
1296	chr12	93276196	93276197	rs10745624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q22		rs10745624-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1296	chr12	93286213	93286214	rs116987964	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q22	NR	rs116987964-?	NR	4E-8				Illumina [7760689] (imputed)	N
1297	chr12	93325425	93325426	rs7970111	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q22	NR	rs7970111-?	NR	5E-6		4.561	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1297	chr12	93327910	93327911	rs56290130	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	12q22	NR	rs56290130-T	0.314115	3E-8		0.03742017	[0.024-0.051] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1297	chr12	93327910	93327911	rs56290130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	12q22	Intergenic	rs56290130-A	0.3273	3E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1297	chr12	93363574	93363575	rs7967768	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q22	EEA1	rs7967768-C	NR	8E-6		3.3450158	[2.01-4.68] unit decrease	Illumina [> 6200000] (imputed)	N
1297	chr12	93368286	93368287	rs75669000	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q22	NR	rs75669000-A	0.01568	6E-9	(PSAP)	0.1868	NR unit increase	Illumina [1671387] (imputed)	N
1297	chr12	93368286	93368287	rs75669000	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q22	NR	rs75669000-A	0.01568	3E-8	(PYCARD)	0.01572	NR unit increase	Illumina [1671387] (imputed)	N
1297	chr12	93414270	93414271	rs11106805	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q22	NR	rs11106805-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
1297	chr12	93414270	93414271	rs11106805	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q22	NR	rs11106805-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
1297	chr12	93414270	93414271	rs11106805	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q22	NR	rs11106805-?		7E-6	(African)			Illumina [~ 5140000] (imputed)	N
1297	chr12	93414270	93414271	rs11106805	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q22	NR	rs11106805-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
1297	chr12	93438842	93438843	rs11106825	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	12q22	LOC643339	rs11106825-T	NR	9E-6		0.22215	[0.12-0.32] unit increase	Illumina [7433384] (imputed)	N
1298	chr12	93514761	93514762	rs11106863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs11106863-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1298	chr12	93515551	93515552	rs11106865	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (1 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	12q22		rs11106865-?	NR	8E-6				Illumina [1365315]	N
1298	chr12	93550300	93550301	rs1836127	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	12q22	intergenic	rs1836127-A	0.42	3E-6	(NAS)	0.76	[NR] unit increase	Illumina [324623]	N
1299	chr12	93631004	93631004	rs147153202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q22	NR	rs147153202-G	0.86492	5E-27		0.0125631	[0.01-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1299	chr12	93631004	93631004	rs147153202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q22	NR	rs147153202-G	0.8651	5E-14		0.0132396	[0.0097-0.0168] unit increase	Affymetrix [16585854] (imputed)	N
1299	chr12	93631004	93631004	rs147153202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q22	NR	rs147153202-G	0.86492	9E-21		0.0123985	[0.0097-0.0151] unit increase	Affymetrix [16582965] (imputed)	N
1299	chr12	93631004	93631004	rs147153202	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q22	NR	rs147153202-G	0.8651	5E-10		0.0131824	[0.0091-0.0173] unit increase	Affymetrix [16585866] (imputed)	N
1299	chr12	93645480	93645481	rs61935525	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q22	PLEKHG7, EEA1, LOC643339	rs61935525-?		3E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1299	chr12	93645480	93645481	rs61935525	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q22	PLEKHG7, EEA1, LOC643339	rs61935525-?	NR	3E-11	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1299	chr12	93645480	93645481	rs61935525	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q22	PLEKHG7, EEA1, LOC643339	rs61935525-C	0.9848	3E-7	(African)	10.15	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
1299	chr12	93687083	93687084	rs4761659	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	12q22	LOC100287580	rs4761659-?		3E-7				Illumina [859311]	N
1299	chr12	93709891	93709892	rs4761702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12q22	RP11-486A14.1, RP11-486A14.2	rs4761702-C	0.3774	8E-9		0.02113317	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1299	chr12	93712109	93712109	rs142723961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q22	RP11-486A14.2	rs142723961-CA	0.298533	2E-9		0.015446809	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93720667	93720668	rs113792729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q22		rs113792729-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1300	chr12	93748144	93748145	rs11106995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q22	RP11-486A14.2	rs11106995-C	0.308563	6E-18		0.0209121	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93748144	93748145	rs11106995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q22	NR	rs11106995-C	0.308686	2E-27		0.021484	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1300	chr12	93749124	93749125	rs6538413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q22		rs6538413-T	NR	5E-17		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1300	chr12	93749124	93749125	rs6538413	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q22		rs6538413-G	0.692	1E-12		0.09	[-0.11--0.06] % decrease	Affymetrix [NR] (imputed)	N
1300	chr12	93754403	93754404	rs4761517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q22		rs4761517-C	NR	6E-20		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1300	chr12	93754403	93754404	rs4761517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs4761517-C	0.305581	5E-29				Affymetrix, Illumina [24246363] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.111186	5E-14		0.027365312	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.111187	9E-12		0.024753656	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.111092	2E-11		0.0243893	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.111215	8E-16		0.029120395	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.11122	2E-13		0.02667198	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q22	NR	rs59883166-I	0.111386	2E-13		0.024898	[0.018-0.032] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.1116	2E-11		0.03858732	[0.027-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1300	chr12	93758318	93758318	rs59883166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q22	RP11-486A14.2	rs59883166-AT	0.1116	6E-17		0.04805726	[0.037-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1300	chr12	93760822	93760823	rs11106996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q22	RP11-486A14.2	rs11106996-T	0.10566	3E-14		0.029312346	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93760822	93760823	rs11106996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs11106996-T	0.145504	5E-11				Affymetrix, Illumina [21126107] (imputed)	N
1300	chr12	93760822	93760823	rs11106996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs11106996-T	0.144211	1E-30				Affymetrix, Illumina [20825802] (imputed)	N
1300	chr12	93760822	93760823	rs11106996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q22		rs11106996-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1300	chr12	93767910	93767911	rs11107001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q22	NR	rs11107001-C	0.10439	1E-31		0.037128	[0.031-0.043] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1300	chr12	93791232	93791233	rs17790482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q22		rs17790482-G	NR	4E-8		0.02	[0.013-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1300	chr12	93791232	93791233	rs17790482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q22	NUDT4	rs17790482-G	0.102901	3E-12		0.02548325	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93796808	93796809	rs12231625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q22	NUDT4	rs12231625-A	0.145494	3E-13		0.023409162	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93807710	93807711	rs79579959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q22	UBE2N	rs79579959-A	0.158088	2E-12		0.021576019	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr12	93807710	93807711	rs79579959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q22	NR	rs79579959-G	0.842117	1E-15		0.020638	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1300	chr12	93820132	93820133	rs2291266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs2291266-C	0.84475	7E-14				Affymetrix, Illumina [22063850] (imputed)	N
1300	chr12	93833617	93833618	rs11107027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q22		rs11107027-C	0.253106	5E-9		0.0221799	[0.015-0.03] unit increase	Illumina [13478928] (imputed)	N
1301	chr12	93850901	93850902	rs11107039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q22		rs11107039-A	NR	7E-23		0.024	[0.019-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1301	chr12	93852324	93852325	rs7300275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q22	Y_RNA	rs7300275-A	0.157354	2E-16		0.025371091	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1301	chr12	93883138	93883139	rs10431427	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q22	MRPL42	rs10431427-?	NR	2E-8		0.02646	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1301	chr12	93888538	93888539	rs10161215	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (maternal genetic effects)	301 European ancestry complete and incomplete trios	NA	12q22	MRPL42	rs10161215-?	NR	9E-6				Illumina [NR]	N
1301	chr12	93903227	93903228	rs12425835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q22	RN7SL737P	rs12425835-T	0.157786	2E-18		0.026767535	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1301	chr12	93903227	93903228	rs12425835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q22	NR	rs12425835-T	0.15774	2E-26		0.026631	[0.022-0.032] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1301	chr12	93921555	93921556	rs61333282	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	12q22		rs61333282-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1301	chr12	93921555	93921556	rs61333282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs61333282-T	0.184555	6E-29				Affymetrix, Illumina [24588908] (imputed)	N
1301	chr12	93923636	93923637	rs10859510	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q22		rs10859510-T	0.843	7E-10				Affymetrix [10369434] (imputed)	N
1301	chr12	93948456	93948457	rs10859525	25246029	DiStefano JK	2014-09-23	Acta Diabetol	Genome-wide analysis of hepatic lipid content in extreme obesity.	Hepatic lipid content in extreme obesity	1,868 European ancestry cases	NA	12q22	SOCS2	rs10859525-?	NR	4E-7	(Hepatic lipid content grade 1 versus 0)			Illumina [605718]	N
1301	chr12	93950736	93950737	rs10859529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	SOCS2-AS1	rs10859529-T	NR	4E-11		0.019506	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1301	chr12	93956671	93956672	rs11614062	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	12q22	SOCS2-AS1	rs11614062-T	0.1943	2E-8		0.0047932197	[0.0031-0.0065] m increase	Illumina [24111857] (imputed)	N
1301	chr12	93968255	93968256	rs1316739	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q22	NR	rs1316739-?	NR	7E-7	(female)	0.14178	[0.086-0.198] unit increase	Affymetrix [7794483] (imputed)	N
1301	chr12	93968255	93968256	rs1316739	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q22	NR	rs1316739-?	NR	5E-15		0.20446	[0.15-0.26] unit increase	Affymetrix [7794483] (imputed)	N
1301	chr12	93968255	93968256	rs1316739	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q22	NR	rs1316739-?	NR	5E-10	(male)	0.25827	[0.18-0.34] unit increase	Affymetrix [7794483] (imputed)	N
1301	chr12	93973500	93973501	rs10745657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	SOCS2	rs10745657-A	NR	2E-10		0.0180216	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1301	chr12	93976953	93976954	rs3825199	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q22	SOCS2	rs3825199-A	0.773	4E-49		0.051	[0.043-0.059] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1301	chr12	93976953	93976954	rs3825199	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	12q22	MRPL42, CRADD, UBE2N, SOCS2	rs3825199-C	0.24	2E-7		6.2	[3.85-8.55] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1301	chr12	93976999	93977000	rs3741674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	SOCS2	rs3741674-G	NR	3E-15		0.0222781	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
1301	chr12	93976999	93977000	rs3741674	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	SOCS2	rs3741674-G	NR	3E-8		0.0172748	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1301	chr12	93978443	93978443	rs747058684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q22	NR	rs747058684-T	0.219796	8E-14		0.0594788	[0.043-0.076] unit increase	Affymetrix [17914406] (imputed)	N
1301	chr12	93978503	93978504	rs11107116	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q22	NR	rs11107116-?	NR	1E-6		0.03632571	[0.022-0.051] unit increase	Illumina [34656550] (imputed)	N
1301	chr12	93978503	93978504	rs11107116	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q22	SOCS2	rs11107116-T	0.219714310921347	4E-8		0.0467	[0.03-0.063] unit increase	NR [5035015] (imputed)	N
1301	chr12	93978503	93978504	rs11107116	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q22	SOCS2	rs11107116-T	0.31	6E-12		0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1301	chr12	93978503	93978504	rs11107116	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q22	SOCS2	rs11107116-T	0.22	1E-34		0.052	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1301	chr12	93978503	93978504	rs11107116	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	12q22	SOCS2	rs11107116-G	0.77	6E-10		0.04	[0.01-0.07] s.d. decrease (males)	Affymetrix [402951]	N
1302	chr12	93980087	93980088	rs10492321	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	12q22	SOCS2	rs10492321-A	0.21	7E-11		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1302	chr12	93980541	93980541	rs35572626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q22		rs35572626-CATTT	NR	6E-23		0.0186	[0.015-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1302	chr12	93980541	93980541	rs35572626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q22		rs35572626-CATTT	0.312036	4E-47		0.0310942	[0.027-0.035] unit increase	Illumina [13479295] (imputed)	N
1302	chr12	93983553	93983554	rs7953508	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	12q22	SOCS2	rs7953508-C	0.72	4E-6	(Pubertal growth)	0.07	[0.041-0.099] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1302	chr12	93985481	93985482	rs11107120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q22		rs11107120-C	NR	1E-134		0.0362	[0.033-0.039] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1302	chr12	93985481	93985482	rs11107120	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q22	SOCS2, CRADD	rs11107120-?	NR	1E-52		0.04718639	[0.041-0.053] unit increase	Illumina [27896057] (imputed)	N
1302	chr12	93988282	93988283	rs11107124	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q22	NR	rs11107124-G	0.710941	3E-10		0.00592994	[0.0041-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
1302	chr12	93988282	93988283	rs11107124	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q22	NR	rs11107124-G	0.710941	3E-8		0.00583106	[0.0038-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
1302	chr12	93989683	93989683	rs35000205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	SOCS2	rs35000205-AT	NR	2E-12		0.0261427	[0.019-0.033] unit increase	Affymetrix [323123] (imputed)	N
1302	chr12	93989731	93989732	rs10859536	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q22	SOCS2, CRADD	rs10859536-?	NR	3E-34		0.06191986	[0.052-0.072] unit increase	Illumina [27896057] (imputed)	N
1302	chr12	93989734	93989735	rs6538437	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q22	NR	rs6538437-T	0.28902300000000003	3E-9		0.0161517	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
1302	chr12	93989734	93989735	rs6538437	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q22	NR	rs6538437-T	0.289966	7E-9		0.0615033	[0.04-0.083] unit increase	Affymetrix [21375087] (imputed)	N
1302	chr12	93993265	93993266	rs9634212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	SOCS2	rs9634212-A	NR	3E-23		0.0336918	[0.027-0.04] unit increase	Affymetrix [321016] (imputed)	N
1302	chr12	93993265	93993266	rs9634212	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q22	intergenic	rs9634212-A	0.221	9E-95		0.0471	[0.043-0.052] unit increase	Affymetrix [18391927] (imputed)	N
1302	chr12	93993265	93993266	rs9634212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q22	NR	rs9634212-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1302	chr12	93993265	93993266	rs9634212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs9634212-?	NR	8E-175				NR [~ 8900000] (imputed)	N
1302	chr12	93993265	93993266	rs9634212	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q22	SOCS2	rs9634212-A	0.2227	9E-12		0.0522	[0.037-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1302	chr12	93994826	93994827	rs2364232	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q22	TANK, PSMD14, TBR1	rs2364232-?		5E-8				NR [7428630] (imputed)	N
1302	chr12	93997999	93998000	rs998616	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q22	NR	rs998616-G	0.29652599999999996	2E-9		0.0132641	[0.0089-0.0176] unit increase	Affymetrix [16583148] (imputed)	N
1302	chr12	94007288	94007289	rs11107128	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	12q22	SOCS2	rs11107128-?	NR	4E-6				Affymetrix, Illumina [2723488] (imputed)	N
1302	chr12	94052149	94052150	rs11107141	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q22	CRADD	rs11107141-G	0.0119704590322491	6E-6	(C_Deltaproteobacteria_HB)	1.15115	[0.65-1.65] unit decrease	Illumina [7711310] (imputed)	N
1302	chr12	94062187	94062188	rs7301405	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12q22	intergenic	rs7301405-?	NR	8E-6		0.132	[0.061-0.203] unit increase	Illumina [at least 13000000] (imputed)	N
1302	chr12	94084417	94084418	rs11107154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD	rs11107154-C	NR	3E-11		0.022469	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1302	chr12	94084877	94084878	rs10777534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	CRADD	rs10777534-C	NR	7E-11		0.0191481	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1302	chr12	94089998	94089999	rs144573316	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	12q22	NR	rs144573316-T	0.03945	2E-6		0.3674	[0.22-0.52] unit decrease	Illumina [10677593] (imputed)	N
1302	chr12	94090866	94090867	rs10745658	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	CRADD	rs10745658-A	NR	4E-15		0.0222086	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q22	CRADD	rs10745659-G	NR	2E-9		0.0171365	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q22	CRADD	rs10745659-G	NR	4E-8		0.0156324	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q22	NR	rs10745659-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q22	NR	rs10745659-G	0.44	3E-11		0.012	[0.0085-0.0155] unit increase	Affymetrix [2446094] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q22	NR	rs10745659-G	0.44	5E-8				Affymetrix [2446094] (imputed)	N
1302	chr12	94092689	94092690	rs10745659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q22	NA	rs10745659-C	0.5607	1E-12		0.0127	[0.0092-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr12	94096041	94096042	rs7969076	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q22		rs7969076-?	NR	1E-12		0.0159011	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1302	chr12	94096041	94096042	rs7969076	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q22	CRADD	rs7969076-T	0.485667	4E-7	(men)	0.0243218	[0.014-0.034] unit decrease	NR [17166351] (imputed)	N
1302	chr12	94096041	94096042	rs7969076	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q22	CRADD	rs7969076-T	0.485313	2E-10		0.0214563	[0.015-0.028] unit decrease	NR [17166351] (imputed)	N
1302	chr12	94108171	94108172	rs7959913	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD, RP11-887P2.5	rs7959913-G	NR	5E-14		0.023427	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1303	chr12	94120338	94120339	rs10859563	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q22	SOCS2	rs10859563-?	NR	3E-12	(Conditioned on rs11107116)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1303	chr12	94120731	94120732	rs10777536	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q22	CRADD	rs10777536-G	0.48621	7E-18		0.016058	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
1303	chr12	94120731	94120732	rs10777536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q22		rs10777536-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1303	chr12	94120731	94120732	rs10777536	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q22		rs10777536-?	NR	5E-13		0.0163049	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1303	chr12	94121313	94121314	rs12817549	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q22	NR	rs12817549-T	0.5521	1E-11		0.0116	[0.0083-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
1303	chr12	94121313	94121314	rs12817549	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q22	NR	rs12817549-T	0.5523	9E-12		0.0116	[0.0083-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
1303	chr12	94121313	94121314	rs12817549	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q22	CRADD	rs12817549-T	0.5607	2E-8	(EA,men)	0.0286	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1303	chr12	94121313	94121314	rs12817549	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q22	CRADD	rs12817549-T	0.5607	2E-16	(EA)	0.0292	[0.022-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1303	chr12	94121313	94121314	rs12817549	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q22	CRADD	rs12817549-T	0.5607	1E-11	(EA, women)	0.0307	[0.022-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1303	chr12	94126924	94126925	rs10859567	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q22	CRADD	rs10859567-T	0.563	5E-33		0.035	[0.029-0.041] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1303	chr12	94132613	94132615	rs66976655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q22	CRADD	rs66976655-A	0.447761	6E-9		0.013260705	[0.0088-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr12	94132613	94132615	rs66976655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q22	CRADD	rs66976655-A	0.447881	2E-11		0.015261645	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr12	94132613	94132615	rs66976655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q22	CRADD	rs66976655-A	0.447867	1E-12		0.016060721	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1303	chr12	94133283	94133284	rs10777538	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q22	NR	rs10777538-G	0.449863	3E-8		0.0541522	[0.035-0.073] unit decrease	Affymetrix [21375087] (imputed)	N
1303	chr12	94133283	94133284	rs10777538	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs10777538-?	NR	1E-80				NR [~ 8900000] (imputed)	N
1303	chr12	94133283	94133284	rs10777538	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q22	NR	rs10777538-G	0.448223	9E-10		0.0192162	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1303	chr12	94136008	94136009	rs7953280	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	12q22		rs7953280-C	0.5016	5E-12		1.0431031	[1.030706222-1.055649039]	Affymetrix, Illumina [NR] (imputed)	N
1303	chr12	94136008	94136009	rs7953280	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q22	CRADD	rs7953280-C	0.5071	3E-64		0.0312	[0.028-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
1303	chr12	94136008	94136009	rs7953280	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q22	CRADD	rs7953280-?	NR	1E-20		0.03453583	[0.027-0.042] unit decrease	Illumina [27896057] (imputed)	N
1303	chr12	94136405	94136406	rs4761523	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q22	CRADD	rs4761523-?	NR	2E-9		0.055	[0.037-0.073] unit decrease	Illumina [34656550] (imputed)	N
1303	chr12	94141771	94141772	rs4144503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD	rs4144503-A	NR	3E-16		0.0252649	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1303	chr12	94144174	94144175	rs4761524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q22		rs4761524-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1303	chr12	94154124	94154125	rs1585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q22	NR	rs1585-C	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
1303	chr12	94159587	94159588	rs10745661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q22		rs10745661-G	NR	2E-14		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1303	chr12	94161718	94161719	rs11107175	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	12q22	CRADD	rs11107175-C	0.891	1E-8	(AA)	0.062	[0.04-0.084] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1303	chr12	94161718	94161719	rs11107175	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	12q22	CRADD	rs11107175-C	0.889	2E-6	(AA)	0.083	[0.048-0.118] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1303	chr12	94167219	94167220	rs2171126	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	12q22	NR	rs2171126-T	0.51	9E-10		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1303	chr12	94169008	94169009	rs6538452	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q22	NR	rs6538452-?	NR	3E-9				Affymetrix [NR]	N
1303	chr12	94180615	94180616	rs10859580	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q22	CRADD	rs10859580-A		4E-8		0.143	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1303	chr12	94181327	94181328	rs4144502	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	12q22	NR	rs4144502-A	0.51	9E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1303	chr12	94184081	94184082	rs11107184	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q22	CRADD	rs11107184-T	0.34	4E-8		14.89	[9.58-20.2] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1303	chr12	94184268	94184268	rs35625321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD	rs35625321-ATAAC	NR	5E-11		0.0208048	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1303	chr12	94184269	94184269	rs34322845	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q22	CRADD	rs34322845-A	0.6165	7E-10		0.0406	[0.028-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1303	chr12	94185133	94185134	rs4761745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD	rs4761745-T	NR	6E-10		0.019788	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1303	chr12	94190162	94190163	rs10859587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	CRADD	rs10859587-C	NR	6E-15		0.0221304	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1303	chr12	94194889	94194890	rs9788269	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q22	CRADD	rs9788269-A	0.7324	4E-7		0.0135	[0.0082-0.0188] unit decrease	Affymetrix [19819130] (imputed)	N
1303	chr12	94194889	94194890	rs9788269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q22		rs9788269-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1303	chr12	94199512	94199513	rs58899389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	CRADD	rs58899389-C	NR	6E-13		0.0212553	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1303	chr12	94201278	94201279	rs34118426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q22	CRADD	rs34118426-G	NR	5E-8		0.0183367	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1303	chr12	94201278	94201279	rs34118426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q22	CRADD	rs34118426-G	NR	8E-12		0.0228617	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1303	chr12	94207531	94207532	rs3847787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs3847787-?	NR	7E-26				NR [~ 8900000] (imputed)	N
1303	chr12	94235164	94235165	rs61144803	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q22	CRADD	rs61144803-?	0.04	5E-8		0.16	unit decrease	Illumina [NR] (imputed)	N
1303	chr12	94238444	94238445	rs10777546	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q22	CRADD	rs10777546-?	NR	6E-9		0.016639445	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
1304	chr12	94294234	94294235	rs17790566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q22	NR	rs17790566-A	NR	1E-14		0.0302	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1304	chr12	94310752	94310753	rs10777553	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	12q22	CRADD, LOC101928731, PLXNC1	rs10777553-A	0.05	2E-6		0.93	[0.54-1.32] unit increase	Illumina [at least 4710000] (imputed)	N
1304	chr12	94319388	94319389	rs77553148	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q22	LOC105369911	rs77553148-C	0.911439	1E-9		0.0198074	[0.013-0.026] unit decrease	NR [13737936] (imputed)	N
1304	chr12	94325299	94325300	rs4451776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q22	RP11-1060G2.1	rs4451776-T	NR	1E-8		0.0163952	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1304	chr12	94326673	94326674	rs7961023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs7961023-?	NR	4E-28				NR [~ 8900000] (imputed)	N
1304	chr12	94353537	94353538	rs10459183	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q22	RP11-1060G2.2	rs10459183-A	0.2933	5E-6		0.0337	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1305	chr12	94426467	94426468	rs4761545	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	12q22	PLXNC1	rs4761545-G	NR	8E-10				NR [NR] (imputed)	N
1305	chr12	94426467	94426468	rs4761545	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q22	NR	rs4761545-T	0.604	4E-7		0.017841259	[0.011-0.025] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1305	chr12	94443094	94443095	rs11107344	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q22		rs11107344-?	NR	4E-8				NR [NR]	N
1305	chr12	94443094	94443095	rs11107344	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q22		rs11107344-?	NR	4E-8				NR [NR]	N
1305	chr12	94443134	94443135	rs11107345	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q22		rs11107345-?	NR	5E-8				NR [NR]	N
1305	chr12	94450571	94450572	rs17296444	30054556	Akiyama M	2018-07-27	J Hum Genet	Genome-wide association study suggests four variants influencing outcomes with ranibizumab therapy in exudative age-related macular degeneration.	Response to ranibizumab in age-related macular degeneration (exudative)	361 Japanese ancestry responder cases, 73 Japanese ancestry non-responder controls	363 Japanese ancestry responder cases, 122 Japanese ancestry non-responder controls	12q22	PLXNC1	rs17296444-T	0.102	7E-6		2.43	[1.64-3.59]	Illumina [6826359] (imputed)	N
1305	chr12	94464566	94464567	rs149168595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q22		rs149168595-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1306	chr12	94528824	94528825	rs3847794	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	12q22	NR	rs3847794-G	0.357	7E-6	(Nicotine use)			Illumina [527829]	N
1306	chr12	94535946	94535947	rs10859677	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	12q22		rs10859677-?	NR	5E-9				NR [9705931] (imputed)	N
1306	chr12	94536802	94536803	rs3858607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q22	RP11-74K11.1	rs3858607-C	0.378432	2E-10		0.014624393	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1306	chr12	94536802	94536803	rs3858607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q22	RP11-74K11.1	rs3858607-C	0.378432	4E-12		0.015945408	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1306	chr12	94536802	94536803	rs3858607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs3858607-C	0.406182	7E-11				Affymetrix, Illumina [19872809] (imputed)	N
1306	chr12	94536802	94536803	rs3858607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q22	NR	rs3858607-C	0.380314	6E-13		0.014908	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1306	chr12	94536802	94536803	rs3858607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q22		rs3858607-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1306	chr12	94541858	94541859	rs7299099	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12q22	PLXNC1	rs7299099-T	NR	5E-6		1.19065		Illumina [1233578] (imputed)	N
1306	chr12	94544544	94544545	rs3847797	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	12q22		rs3847797-?	NR	8E-6				Illumina [3311160] (imputed)	N
1306	chr12	94544544	94544545	rs3847797	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q22	NR	rs3847797-?	NR	7E-6		919.5148	NR unit decrease	Illumina [2379855]	N
1306	chr12	94551798	94551799	rs4761587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	12q22		rs4761587-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1306	chr12	94558437	94558449	rs377150901	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q22	PLXNC1	rs377150901-G	0.861957	4E-10		1.0561837	[1.03827414919458-1.07440206223301]	NR [9572556] (imputed)	N
1306	chr12	94558575	94558576	rs3847803	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	12q22	NR	rs3847803-T	0.8633	2E-7	(Entorhinal)	0.011207414	[0.007-0.0154] unit increase	Affymetrix, Illumina [NR]	N
1306	chr12	94558575	94558576	rs3847803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q22		rs3847803-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1306	chr12	94575141	94575142	rs3794221	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 79)	19,670 European ancestry individuals	NA	12q22		rs3794221-?	NR	3E-8				NR [9705931] (imputed)	N
1306	chr12	94578817	94578818	rs76785153	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLXNC1	rs76785153-?	NR	2E-9		1.49642	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1306	chr12	94582335	94582336	rs12303699	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q22	PLXNC1	rs12303699-A	0.38	8E-12				NR [> 9500000] (imputed)	N
1306	chr12	94582335	94582336	rs12303699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q22		rs12303699-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1306	chr12	94582476	94582477	rs7134784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	12q22		rs7134784-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1306	chr12	94604962	94604963	rs7961712	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	12q22	PLXNC1	rs7961712-A	0.849900914672936	7E-10		0.056485236	[0.039-0.074] unit increase	Affymetrix [35186738] (imputed)	N
1306	chr12	94604962	94604963	rs7961712	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	12q22	PLXNC1, CEP83, CEP83-AS1, CRADD, MIR5700, TMCC3	rs7961712-A	0.84991	6E-11		1.06067	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
1306	chr12	94613897	94613898	rs115651556	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXNC1	5,355 Icelandic ancestry individuals	NA	12q22		rs115651556-A	0.01353	2E-151		1.98517	[1.84-2.13] unit decrease	Illumina [7506463] (imputed)	N
1306	chr12	94613897	94613898	rs115651556	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q22	PLXNC1	rs115651556-A	0.014	2E-100	(Plexin-C1, PLXNC1.4564.2.2)	2.14	[1.94-2.34] unit decrease	Affymetrix [10572788] (imputed)	N
1306	chr12	94621614	94621615	rs59129883	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q22	NR	rs59129883-A	0.42	2E-69	(Plexin-C1, PLXNC1.4564.2.2)	0.42	[0.38-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1306	chr12	94623501	94623502	rs7972001	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q22	PLXNC1	rs7972001-T	0.03373615	8E-16	(EA, Plexin-C1)	1.005	[0.76-1.25] unit decrease	Affymetrix [509946]	N
1306	chr12	94623823	94623824	rs6538487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXNC1	5,355 Icelandic ancestry individuals	NA	12q22		rs6538487-G	0.3806	4E-46		0.265748	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
1306	chr12	94623823	94623824	rs6538487	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q22	PLXNC1	rs6538487-G	0.38203125	2E-28	(PLXNC1, 4564_2_2)	0.27640238	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
1306	chr12	94630028	94630029	rs2361355	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q22	PLXNC1	rs2361355-G	0.4064386	9E-27	(Plexin-C1)	0.4635	[0.38-0.55] unit decrease	Affymetrix [509946]	N
1306	chr12	94632025	94632026	rs7958289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXNC1	5,355 Icelandic ancestry individuals	NA	12q22		rs7958289-A	0.03218	2E-27		0.559151	[0.46-0.66] unit decrease	Illumina [7506463] (imputed)	N
1306	chr12	94632932	94632933	rs12313790	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q22	NR	rs12313790-A	0.091	1E-54	(Plexin-C1, PLXNC1.4564.2.2)	0.65	[0.57-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr12	94661452	94661453	rs61708525	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q22	PLXNC1	rs61708525-G	NR	2E-8		1.0702	NR	Affymetrix, Illumina [8278136] (imputed)	N
1307	chr12	94662670	94662671	rs73228161	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	12q22	PLXNC1	rs73228161-A	NR	6E-6	(females)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1307	chr12	94665412	94665413	rs7970261	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	12q22		rs7970261-A	0.97	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1307	chr12	94676444	94676445	rs1681866	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12q22	NR	rs1681866-?		7E-6		0.01	[0.0055-0.0145] unit increase	Illumina [7533529] (imputed)	N
1307	chr12	94678063	94678064	rs1726906	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q22	CCDC41	rs1726906-?	NR	8E-6	(creatinine)	1.7482249	[0.98-2.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1307	chr12	94683203	94683204	rs4761470	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	12q22	NR	rs4761470-?	0.177	6E-7		1.375	[1.214-1.556] unit increase	Illumina [563945]	N
1307	chr12	94688687	94688688	rs3803070	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q22	NR	rs3803070-?	NR	6E-15				Affymetrix [NR]	N
1307	chr12	94692628	94692632	rs144449115	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q22	PLXNC1	rs144449115-A	0.3323	1E-9		0.2933	[0.2-0.39] mmHg increase	Affymetrix [NR] (imputed)	N
1307	chr12	94692826	94692827	rs56290609	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q22	PLXNC1	rs56290609-T	0.9267	9E-21		0.4622	[0.37-0.56] mmHg increase	Affymetrix [NR] (imputed)	N
1307	chr12	94719016	94719017	rs113918189	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	12q22	CEP83	rs113918189-?	NR	4E-8		0.02345	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1307	chr12	94719016	94719017	rs113918189	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	12q22	CEP83	rs113918189-?	NR	3E-8		0.02381	[0.015-0.032] unit decrease	Illumina [6108953] (imputed)	N
1307	chr12	94742536	94742537	rs11615536	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CEP83	rs11615536-?	NR	4E-9	(male)	4.2514	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr12	94801941	94801942	rs12368829	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CEP83	rs12368829-?	NR	3E-8		1.96472	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr12	94819904	94819905	rs142836096	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	12q22	NR	rs142836096-C	0.04364	8E-7		0.9264	[0.054-1.799] unit increase	Illumina [at least 567677] (imputed)	N
1308	chr12	94850478	94850479	rs1915335	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12q22	NR	rs1915335-?		5E-6		0.01	[0.0054-0.0146] unit decrease	Illumina [7533529] (imputed)	N
1308	chr12	94852627	94852628	rs10859698	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q22	CCDC41	rs10859698-A	0.21	3E-8		21.19	[13.66-28.72] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1308	chr12	94865476	94865477	rs1520724	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q22	CCDC41	rs1520724-G	0.415	9E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1308	chr12	94880741	94880742	rs139236208	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12q22	CCDC41	rs139236208-A	0.1	2E-10		0.363	[0.25-0.48] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1308	chr12	94882904	94882905	rs76785029	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q22	LOC144486, MIR5700	rs76785029-C		9E-8	(EA)	0.423	unit increase	Affymetrix [at least 2696785] (imputed)	N
1308	chr12	94882904	94882905	rs76785029	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q22	LOC144486, MIR5700	rs76785029-C		3E-8		0.418	unit increase	Affymetrix [at least 2696785] (imputed)	N
1308	chr12	94882904	94882905	rs76785029	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q22	LOC144486, MIR5700	rs76785029-C		5E-14		0.379	unit increase	Affymetrix [at least 2696785] (imputed)	N
1309	chr12	94925611	94925612	rs10859719	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q22	Intergenic	rs10859719-C	NR	9E-6	(women)	0.0230284	[0.013-0.033] unit increase	Illumina [13520550] (imputed)	N
1309	chr12	94928076	94928077	rs7301219	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	12q22	NR	rs7301219-?		4E-6				Illumina [up to 6969139] (imputed)	N
1309	chr12	94928076	94928077	rs7301219	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	12q22	Intergenic	rs7301219-C	0.518421429	5E-7		0.151669	[0.092-0.211] unit increase	Illumina [6952813] (imputed)	N
1309	chr12	94929559	94929560	rs6538505	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q22	NR	rs6538505-?	NR	7E-33				Affymetrix [NR]	N
1309	chr12	94976382	94976383	rs3747550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q22	TMCC3	rs3747550-A	0.531701	5E-10		0.013910573	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1309	chr12	94984558	94984559	rs4761637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q22	NR	rs4761637-C	0.581411	7E-11		0.0122	[0.0085-0.0159] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1309	chr12	94984558	94984559	rs4761637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs4761637-C	0.561519	3E-10				Affymetrix, Illumina [24558453] (imputed)	N
1309	chr12	94984558	94984559	rs4761637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q22	NR	rs4761637-C	0.581329	2E-12		0.013253	[0.0096-0.0169] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1309	chr12	94994648	94994649	rs4761638	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Insulin disposition index	up to 4,746 European individuals, up to 412 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	12q22	TMCC3	rs4761638-A	NR	3E-6		0.11	[0.063-0.157] unit increase	Affymetrix, Illumina [at least 1961018] (imputed)	N
1310	chr12	95068079	95068080	rs17250392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q22	Intergenic	rs17250392-A	0.9502	1E-8	(MTAG)	0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1310	chr12	95095837	95095838	rs7968270	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	12q22	intergenic	rs7968270-?	NR	9E-6	(AUC)			NR [2092490]	N
1310	chr12	95114035	95114036	rs2164064	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	12q22	NR	rs2164064-?	NR	1E-8	(Aestuariispira_insulae)	0.30488	[0.2-0.41] unit decrease	Illumina [5293637] (imputed)	N
1310	chr12	95114035	95114036	rs2164064	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	12q22	NR	rs2164064-?	NR	1E-8	(Aestuariispira)	0.30488	[0.2-0.41] unit decrease	Illumina [5293637] (imputed)	N
1310	chr12	95127608	95127609	rs4761496	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	12q22	intergenic	rs4761496-T	NR	5E-7		5.046	NR z-score decrease	Affymetrix, Illumina [up to 9001799] (imputed)	N
1310	chr12	95151943	95151944	rs11609420	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	12q22	Intergenic	rs11609420-G	NR	4E-6	(women)	0.023985	[0.014-0.034] unit increase	Illumina [13520550] (imputed)	N
1311	chr12	95161352	95161353	rs142494129	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	12q22	intergenic	rs142494129-T		5E-6		1015.12	[579.22-1451.02] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1311	chr12	95185187	95185188	rs139660738	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q22	TMCC3, MIR492	rs139660738-T	0.0032	9E-7	(EA)	0.5723	[0.35-0.8] unit increase	Illumina [~ 9000000] (imputed)	N
1311	chr12	95187621	95187622	rs4761669	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	12q22	TMCC3, MIR492	rs4761669-G	NR	1E-6		0.0273	[NR] unit decrease	Illumina [1124301]	N
1311	chr12	95216935	95216936	rs12580507	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	12q22	NR	rs12580507-?	0.2266	4E-7		0.045234	[0.028-0.063] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1311	chr12	95216935	95216936	rs12580507	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	12q22	NR	rs12580507-?	0.2266	6E-7		0.064962	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1311	chr12	95249763	95249764	rs61935443	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q22	NR	rs61935443-C	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1312	chr12	95321306	95321307	rs111812206	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q22		rs111812206-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1312	chr12	95321791	95321792	rs73368737	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q22		rs73368737-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1312	chr12	95324388	95324389	rs249153	24755620	Perez-Palma E	2014-04-22	PLoS One	Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.	Alzheimer's disease	2,540 European ancestry cases, 2,029 European ancestry controls	NA	12q22	intergenic	rs249153-C		4E-7		1.41	[NR]	Affymetrix, Illumina [1216213] (imputed)	N
1312	chr12	95337319	95337320	rs116867473	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		NDUFA12	rs116867473-?	NR	8E-11	(female)	0.527546	[NR] unit increase	Affymetrix [NR] (imputed)	N
1312	chr12	95355540	95355541	rs7306455	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q22	NDUFA12	rs7306455-A	0.1017	1E-8		0.0549	[0.036-0.074] unit decrease	NR [8041861] (imputed)	N
1312	chr12	95360998	95360999	rs7308376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	12q22		rs7308376-T	0.65435335	1E-8		0.08026841	[0.053-0.108] unit increase	Illumina [13426705] (imputed)	N
1312	chr12	95361870	95361871	rs145031112	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q22	NDUFA12	rs145031112-A	0.028822	2E-6		1.11	[1.06-1.16]	NR [8126035] (imputed)	N
1312	chr12	95374259	95374260	rs7311541	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q22	NDUFA12	rs7311541-C	0.9	2E-8		1.07	[1.02-1.13]	Illumina [5167567] (imputed)	N
1312	chr12	95379886	95379889	rs35833668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q22		rs35833668-T	NR	3E-12		0.0205	[0.015-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1312	chr12	95399357	95399358	rs111463574	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		12q22	NR	rs111463574-C	0.915	1E-6		1.72	[1.38-2.14]	Illumina [~ 8000000] (imputed)	N
1312	chr12	95408116	95408117	rs529529785	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	12q22	NR2C1	rs529529785-C	0.0017	1E-6		1.1764	[0.7-1.65] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1312	chr12	95408116	95408117	rs529529785	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12q22	NR2C1	rs529529785-C	0.0016	6E-6		0.999	[0.57-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1313	chr12	95420526	95420527	rs12827634	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	866 European and unknown ancestry individuals	NA	12q22	NDUFA12, NR2C1	rs12827634-?	NR	4E-6		0.09	[0.05-0.12] unit increase	Illumina [> 2600000] (imputed)	N
1313	chr12	95446287	95446288	rs933899	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	12q22	NR2C1	rs933899-A	0.77	2E-9		1.15	[1.10-1.20]	Illumina [5932413] (imputed)	N
1313	chr12	95487225	95487226	rs7977311	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q22	FGD6	rs7977311-T	0.1168	9E-14		0.2026	[0.15-0.26] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1313	chr12	95490247	95490248	rs12310399	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	12q22	FGD6, NR2C1	rs12310399-T	0.6464	3E-12		0.1383	[0.099-0.177] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
1313	chr12	95490247	95490248	rs12310399	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	12q22	FGD6	rs12310399-A	0.567	2E-7	(Recessive model)	1.852	[1.329-2.58]	Illumina [733202]	N
1313	chr12	95490998	95490999	rs7137731	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	12q22	FGD6, NR2C1	rs7137731-T	0.644	5E-14		0.119	[0.088-0.15] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
1313	chr12	95493911	95493912	rs4762172	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	12q22	FGD6	rs4762172-T	0.91	2E-7	(conditional on rs7307510)	1.1	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1313	chr12	95494759	95494760	rs4762452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q22		rs4762452-C	0.246167959	3E-10		0.09923766	[0.068-0.13] unit decrease	Illumina [13427135] (imputed)	N
1313	chr12	95495040	95495041	rs4762479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	12q22		rs4762479-T	0.235664594	3E-8		0.055139918	[0.036-0.075] unit decrease	Illumina [13429980] (imputed)	N
1313	chr12	95495040	95495041	rs4762479	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q22	NR	rs4762479-T	0.072077	4E-16		0.028752	[0.022-0.036] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1313	chr12	95495040	95495041	rs4762479	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q22	FGD6	rs4762479-T	0.079	7E-12		0.08	[0.056-0.104] unit decrease	Affymetrix [7947838] (imputed)	N
1313	chr12	95496641	95496642	rs559407767	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q22	FGD6	rs559407767-C	0.0041	3E-6		0.5033	[0.29-0.72] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1313	chr12	95500634	95500635	rs61938198	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	12q22	FGD6	rs61938198-A	0.6871	5E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1313	chr12	95500634	95500635	rs61938198	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	12q22	FGD6	rs61938198-A	0.6871	4E-6		0.0286	[0.016-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1313	chr12	95502302	95502303	rs11107896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q22		rs11107896-A	NR	2E-12		0.0914	[0.066-0.117] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1313	chr12	95507970	95507971	rs11107903	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q22	FGD6	rs11107903-?	NR	4E-24		0.0794072	[0.064-0.095] unit decrease	Illumina [4804024] (imputed)	N
1313	chr12	95507970	95507971	rs11107903	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q22	FGD6	rs11107903-A	0.0768	1E-12		0.0747	[0.054-0.095] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1313	chr12	95512140	95512141	rs10859834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q22	FGD6	rs10859834-G	0.791847	9E-10		0.01744047	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1313	chr12	95514981	95514982	rs34539435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs34539435-A	0.102831	5E-19				Affymetrix, Illumina [24588908] (imputed)	N
1313	chr12	95515494	95515494	rs141526980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q22		rs141526980-TGA	NR	7E-12		0.0818	[0.058-0.105] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1313	chr12	95515494	95515494	rs141526980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	12q22		rs141526980-TGA	NR	6E-13		0.0877	[0.064-0.112] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1313	chr12	95521241	95521242	rs11107908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q22		rs11107908-T	0.233090981	1E-8		0.0801701	[0.052-0.108] unit decrease	Illumina [13427711] (imputed)	N
1313	chr12	95521369	95521370	rs11107909	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q22	FGD6	rs11107909-?	NR	6E-13		0.085905	[0.063-0.109] unit decrease	Illumina [19707525] (imputed)	N
1313	chr12	95536948	95536949	rs12369441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	12q22		rs12369441-C	NR	3E-8		0.0498	[0.032-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1313	chr12	95538020	95538021	rs60129850	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	12q22	FGD6	rs60129850-A	0.21	2E-8	(conditional on rs7307510)	1.07	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1313	chr12	95541201	95541202	rs55703445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q22		rs55703445-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1314	chr12	95554770	95554771	rs113745635	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q22	FGD6	rs113745635-T	0.2163	2E-21		0.0275	[0.022-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
1314	chr12	95554770	95554771	rs113745635	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	12q22	FGD6	rs113745635-T	0.21	9E-18		0.041	[0.031-0.051] unit decrease	Affymetrix [27624732] (imputed)	N
1314	chr12	95556115	95556116	rs11107916	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q22		rs11107916-C	0.33	9E-16		8.04	z score increase	Affymetrix [9061022] (imputed)	N
1314	chr12	95577883	95577884	rs4128507	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q22		rs4128507-C	0.18	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
1314	chr12	95577883	95577884	rs4128507	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q22	NR	rs4128507-C	0.1734	2E-11				NR [9056863] (imputed)	N
1314	chr12	95577883	95577884	rs4128507	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q22	NDUFA12, FGD6, VEZT	rs4128507-?		1E-11				NR [7428630] (imputed)	N
1314	chr12	95580817	95580818	rs12830425	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	12q22	FGD6	rs12830425-G	0.0733	8E-9				NR [7320282]	N
1314	chr12	95590624	95590625	rs180986320	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	12q22		rs180986320-G	0.01586	6E-6		2.563	[1.705-3.85399999999999]	Affymetrix [7975321] (imputed)	N
1314	chr12	95591532	95591533	rs10859847	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	12q22	NR	rs10859847-G	NR	6E-6	(random effect)	1.0752687	NR	NR [6904914] (imputed)	N
1314	chr12	95592271	95592272	rs7309426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q22	FGD6	rs7309426-A	0.171811	5E-11		0.019489931	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1314	chr12	95604289	95604290	rs10507047	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	12q22	FGD6	rs10507047-?	NR	3E-8		1.15	[NR]	Illumina [4471719] (imputed)	N
1314	chr12	95649951	95649952	rs11107955	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q22	VEZT	rs11107955-T	0.03333	6E-6	(African)			Illumina [4404269] (imputed)	N
1314	chr12	95668950	95668951	rs4762326	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	12q22	VEZT	rs4762326-T	0.47	2E-9		1.08	1.05-1.11	Affymetrix, Illumina [up to 6979035] (imputed)	N
1314	chr12	95668950	95668951	rs4762326	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	12q22	VEZT	rs4762326-T	0.47	1E-6	(EA)	1.07	1.04-1.10	Affymetrix, Illumina [up to 6979035] (imputed)	N
1314	chr12	95668950	95668951	rs4762326	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	12q22	VEZT	rs4762326-G	0.98	4E-6	(Japanese)	1.22	1.12-1.33	Affymetrix, Illumina [up to 6979035] (imputed)	N
1315	chr12	95696419	95696420	rs3596	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	12q22	VEZT	rs3596-G	0.472	2E-6		1.17	[NR]	Illumina [580699]	N
1315	chr12	95711875	95711876	rs10859871	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	12q22	VEZT	rs10859871-C	0.295	5E-13		1.2	[1.14-1.26]	Illumina [407632]	N
1315	chr12	95750725	95750726	rs4296102	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q22	MIR331	rs4296102-?	NR	5E-7	(AA)	0.01247	[0.0056-0.0193] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1315	chr12	95750725	95750726	rs4296102	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q22	MIR331	rs4296102-?	NR	2E-9		0.003224	[0.00099-0.00546] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1315	chr12	95776257	95776258	rs2252812	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q22	METAP2	rs2252812-?	NR	3E-7	(TAG 54:4)	0.21068463	[0.13-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1315	chr12	95777317	95777318	rs10507055	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	12q22	NR	rs10507055-T	0.37	1E-7		0.216	[0.14-0.3] unit decrease	Illumina [5418572] (imputed)	N
1316	chr12	95831675	95831676	rs80114852	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12q22	intergenic	rs80114852-?	NR	9E-6		0.287	[0.13-0.44] unit decrease	Illumina [at least 13000000] (imputed)	N
1316	chr12	95843643	95843644	rs2658689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q22	NR	rs2658689-A	0.666227	5E-11		0.01317	[0.0092-0.0171] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1316	chr12	95855384	95855385	rs11108056	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	12q22	METAP2	rs11108056-G	0.42	5E-14		0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1316	chr12	95856698	95856699	rs7302913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q22		rs7302913-A	NR	2E-22		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1316	chr12	95857071	95857072	rs2769441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q22	RP11-490G8.1	rs2769441-C	0.337433	7E-35		0.02922332	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr12	95857619	95857620	rs11108061	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q22	NR	rs11108061-T	0.42706900000000003	9E-9		0.00507237	[0.0034-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1316	chr12	95857619	95857620	rs11108061	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q22	NR	rs11108061-T	0.42706900000000003	2E-9		0.00592346	[0.0041-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
1316	chr12	95857689	95857690	rs12231235	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q22	METAP2	rs12231235-G	0.573454	2E-24		0.00517703	[0.0042-0.0062] unit increase	Affymetrix [13995440] (imputed)	N
1316	chr12	95857689	95857690	rs12231235	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q22	NR	rs12231235-G	0.573129	4E-37		0.0261245	[0.022-0.03] unit increase	NR [NR]	N
1316	chr12	95857982	95857983	rs72449396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q22	RP11-490G8.1	rs72449396-T	0.3367	2E-17		0.03245641	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr12	95857982	95857983	rs72449396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q22	RP11-490G8.1	rs72449396-T	0.3367	1E-15		0.03045021	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr12	95857982	95857983	rs72449396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q22	RP11-490G8.1	rs72449396-T	0.3368	1E-21		0.03629159	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr12	95857982	95857983	rs72449396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q22	RP11-490G8.1	rs72449396-T	0.3368	2E-20		0.03519339	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr12	95858208	95858208	rs371082964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q22		rs371082964-CT	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1316	chr12	95858208	95858208	rs371082964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q22		rs371082964-CT	NR	9E-28		0.0286	[0.024-0.034] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1316	chr12	95860015	95860016	rs2769438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q22	NR	rs2769438-C	0.797854	1E-10				Affymetrix, Illumina [22063850] (imputed)	N
1316	chr12	95862112	95862112	rs34994986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q22	RP11-490G8.1	rs34994986-GT	0.337818	1E-45		0.03365155	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr12	95862224	95862225	rs804327	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q22	METAP2	rs804327-T	0.61640625	5E-8	(METAP2, 3170_6_1)	0.13242364	[0.085-0.18] unit decrease	Illumina [> 1000000] (imputed)	N
1316	chr12	95862361	95862362	rs784487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q22	METAP2, RP11-490G8.1	rs784487-A	0.337887	3E-32		0.028002467	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr12	95862361	95862362	rs784487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q22	METAP2, RP11-490G8.1	rs784487-A	0.337866	3E-53		0.036207546	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr12	95862361	95862362	rs784487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q22	METAP2, RP11-490G8.1	rs784487-A	0.337876	1E-51		0.03565176	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr12	95881367	95881367	rs528806375	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q22	NR	rs528806375-A	0.563697	2E-9		0.00700305	[0.0045-0.0095] unit increase	Affymetrix [16585854] (imputed)	N
1316	chr12	95881367	95881367	rs528806375	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q22	NR	rs528806375-A	0.563697	8E-10		0.00851384	[0.0056-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1316	chr12	95887020	95887021	rs301043	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12q22	METAP2	rs301043-G	0.3329	4E-17		0.03181796	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1316	chr12	95896828	95896829	rs2769468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q22		rs2769468-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1316	chr12	95913561	95913562	rs12813389	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	12q22	USP44	rs12813389-A	0.47	1E-16	(BMI-adjusted)	0.032	[0.024-0.04] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1316	chr12	95927036	95927037	rs3812814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q22	NR	rs3812814-G	NR	1E-11		0.0247	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1316	chr12	95928112	95928113	rs11108094	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q22	NR	rs11108094-C	0.9318	1E-10		0.0601	[0.042-0.078] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1316	chr12	95928112	95928113	rs11108094	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q22	NR	rs11108094-C	0.9339	1E-10		0.0571	[0.04-0.074] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1316	chr12	95928559	95928560	rs2197973	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q22	USP44	rs2197973-T	0.5375	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1316	chr12	95930680	95930681	rs12823525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q22	NR	rs12823525-G	NR	6E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1316	chr12	95937603	95937604	rs12823146	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	8,732 European American and African American ancestry men	NA	12q22	NR	rs12823146-?	NR	3E-7		0.224	NR unit increase	Affymetrix, Illumina [7784259] (imputed)	N
1317	chr12	95959787	95959788	rs7136572	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	12q22	USP44	rs7136572-G	0.04	3E-7	(Bupropion, Sexual side effects)			Affymetrix [421789]	N
1317	chr12	95975037	95975038	rs1965221	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q22	Intergenic	rs1965221-T	0.816	2E-6	(AA)	0.178	NR unit decrease	Illumina [NR] (imputed)	N
1317	chr12	95975985	95975986	rs10777709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q22	Intergenic	rs10777709-A	0.817	3E-6	(AA)	0.176	NR unit decrease	Illumina [NR] (imputed)	N
1317	chr12	95979265	95979266	rs11108134	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q22	USP44	rs11108134-G	0.10382713304765	3E-6	(G_Odoribacter_HB)	0.510773	[0.3-0.72] unit decrease	Illumina [7711310] (imputed)	N
1317	chr12	95984468	95984469	rs11834561	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	12q22	USP44	rs11834561-G	NR	1E-6		1.18	percent increase	Affymetrix [8762422] (imputed)	N
1317	chr12	96016956	96016957	rs67129489	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	12q22	PGAM1P5, NTN4	rs67129489-G	0.15	9E-7		1.36	[1.20-1.53]	Affymetrix, Illumina [3378933] (imputed)	N
1317	chr12	96026736	96026737	rs61938093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	12q22		rs61938093-T	NR	1E-16		0.0904	[0.069-0.112] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1317	chr12	96026736	96026737	rs61938093	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	12q22		rs61938093-C	NR	8E-18		1.1284	NR	Affymetrix [7846216] (imputed)	N
1317	chr12	96027466	96027467	rs11836367	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	12q22		rs11836367-?	NR	8E-9		0.042	[0.028-0.056] unit increase	Affymetrix [9906178] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	12q22		rs17356907-?	NR	4E-12		0.896146	[0.87-0.93]	NR [682398]	N
1317	chr12	96027758	96027759	rs17356907	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12q22		rs17356907-A	NR	1E-40		1.09	[1.07-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12q22	NTN4	rs17356907-A	0.7	1E-39	(EA)	1.098901	[1.08-1.11] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	12q22	NR	rs17356907-A	0.7	2E-8		1.0638298	[1.03-1.1] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	12q22	USP44, NTN4	rs17356907-?	NR	1E-13		0.097	[0.071-0.123] unit increase	Illumina [12039487] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	12q22	NR	rs17356907-?	0.7	3E-6		1.098901	[1.69-1.14]	Illumina [10909381] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	12q22	NR	rs17356907-?	0.71	5E-7		1.0526316	[1-1.1] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	12q22	NR	rs17356907-A	0.7	6E-17		1.098901	[1.08-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	12q22	NR	rs17356907-A	0.7	7E-21		1.098901	[1.08-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	12q22	NTN4	rs17356907-A	0.702	9E-6		1.09	[1.04-1.12]	Illumina [NR]	N
1317	chr12	96027758	96027759	rs17356907	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12q22	NTN4	rs17356907-A	0.7	2E-22		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1317	chr12	96027758	96027759	rs17356907	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	12q22	NEDD1, MIR135A2	rs17356907-G	0.296	1E-6		0.081	[0.048-0.114] cup size increase	Illumina [7422970] (imputed)	N
1317	chr12	96027872	96027873	rs10859915	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	12q22	PGAM1P5	rs10859915-T	0.4072	7E-6				Affymetrix, Illumina [9900000] (imputed)	N
1317	chr12	96027872	96027873	rs10859915	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	12q22	PGAM1P5	rs10859915-T	0.4072	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1317	chr12	96027872	96027873	rs10859915	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	12q22	PGAM1P5	rs10859915-T	0.4072	6E-6		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1317	chr12	96027872	96027873	rs10859915	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	12q22	PGAM1P5	rs10859915-T	0.4072	2E-7		0.0319	[0.02-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1317	chr12	96027872	96027873	rs10859915	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	12q22	PGAM1P5	rs10859915-T	0.4072	6E-8		0.0335	[0.021-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1317	chr12	96037388	96037389	rs61938101	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	12q22		rs61938101-A	NR	5E-12		1.091	[1.065-1.119]	Affymetrix [7846216] (imputed)	N
1317	chr12	96050750	96050751	rs11108173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	12q22		rs11108173-G	NR	4E-8		0.0741	[0.048-0.101] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1317	chr12	96050886	96050887	rs11108175	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q22		rs11108175-A	NR	3E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1317	chr12	96050886	96050887	rs11108175	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q22		rs11108175-A	0.8	6E-6	(East Asian)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1317	chr12	96057183	96057184	rs2367563	23921680	Kim DS	2013-07-31	Int Arch Allergy Immunol	A genome-wide association study in Koreans identifies susceptibility loci for allergic nickel dermatitis.	Allergic dermatitis (nickel)	up to 24 Korean ancestry cases, 52 Korean ancestry controls	NA	12q22	NTN4	rs2367563-A	NR	4E-6		5.92	[NR]	Affymetrix [NR]	N
1317	chr12	96062247	96062247	rs3051551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12q22		rs3051551-CAA	NR	3E-9		0.0582	[0.039-0.077] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1317	chr12	96072415	96072416	rs9788093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q22		rs9788093-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1318	chr12	96076349	96076350	rs78734480	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	12q22	NTN4	rs78734480-T	0.97	1E-6	(adjusted for severity)	1.724138	[1.51-1.94]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1318	chr12	96091057	96091058	rs12423171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q22	NR	rs12423171-G	NR	9E-12		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1318	chr12	96091057	96091058	rs12423171	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q22	NR	rs12423171-A	0.77	1E-13		0.0161	[0.012-0.02] unit decrease	NR [NR]	N
1318	chr12	96096618	96096618	rs36062868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q22		rs36062868-GT	NR	7E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1318	chr12	96109854	96109855	rs11108209	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12q22	NTN4	rs11108209-T	0.9068	2E-10		0.1901	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1318	chr12	96128770	96128771	rs6538668	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q22	NR	rs6538668-T	0.3317	7E-13				NR [9056863] (imputed)	N
1318	chr12	96128770	96128771	rs6538668	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 198)	19,670 European ancestry individuals	NA	12q22		rs6538668-?	NR	2E-9				NR [9705931] (imputed)	N
1318	chr12	96131894	96131895	rs17288108	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN4	5,366 Icelandic ancestry individuals	NA	12q22		rs17288108-G	0.1518	4E-23		0.262381	[0.21-0.31] unit decrease	Illumina [7506463] (imputed)	N
1318	chr12	96131894	96131895	rs17288108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q22	NTN4	rs17288108-A	0.84390625	2E-12	(NTN4, 3327_27_1)	0.24014206	[0.17-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1318	chr12	96131894	96131895	rs17288108	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q22	NTN4	rs17288108-G	0.182	7E-18	(Netrin-4, NTN4.3327.27.1)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1318	chr12	96132078	96132079	rs11108226	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q22		rs11108226-T	0.32	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
1318	chr12	96132078	96132079	rs11108226	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q22		rs11108226-T	0.32	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
1318	chr12	96134990	96134991	rs200665104	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	12q22		rs200665104-G	NR	6E-7		5.6457	[3.49-7.8] unit increase	Illumina [NR] (imputed)	N
1318	chr12	96175326	96175327	rs7303901	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	12q22	NTN4, LTA4H, CCDC38, RP11-536G4.1, C12orf55	rs7303901-C	0.68	2E-6	(EA)	0.1	0.06-0.14 unit decrease	Illumina [NR] (imputed)	N
1318	chr12	96194585	96194586	rs117821803	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q23.1	NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H	rs117821803-?		1E-19				Affymetrix, Illumina [NR] (imputed)	N
1318	chr12	96196004	96196005	rs11108272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.1	NR	rs11108272-C	0.146095	8E-11				Affymetrix, Illumina [24653286] (imputed)	N
1318	chr12	96196004	96196005	rs11108272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q23.1	NR	rs11108272-C	0.165111	1E-10		0.016034	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1318	chr12	96196004	96196005	rs11108272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.1	NR	rs11108272-C	0.14672	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
1318	chr12	96204535	96204536	rs55971426	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q23.1	LINC02410, LOC105369921	rs55971426-?	NR	2E-37		1.0847	[0.91-1.26] unit increase	Affymetrix [11100000] (imputed)	N
1319	chr12	96215455	96215456	rs2060546	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs2060546-?	NR	4E-11				Affymetrix [NR]	N
1319	chr12	96237569	96237570	rs7307510	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	12q23.1	SNRPF	rs7307510-C	0.81	3E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
1319	chr12	96242108	96242109	rs7970544	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q23.1	SNRPF	rs7970544-T	0.1869	2E-12		0.0227	[0.016-0.029] unit increase	Affymetrix [19819130] (imputed)	N
1319	chr12	96242108	96242109	rs7970544	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q23.1	SNRPF	rs7970544-T	0.1869	1E-46		0.0439	[0.038-0.05] unit increase	Affymetrix [19819130] (imputed)	N
1319	chr12	96242108	96242109	rs7970544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q23.1		rs7970544-?	NR	7E-58				NR [~ 8900000] (imputed)	N
1319	chr12	96249110	96249111	rs117885456	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	12q23.1	SNRPF	rs117885456-A	0.087	2E-11		0.078	[0.054-0.102] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1319	chr12	96255703	96255704	rs12820313	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	12q23.1	CCDC38	rs12820313-C	0.7931	5E-8		0.044	[0.028-0.06] unit decrease	Affymetrix [27624732] (imputed)	N
1319	chr12	96259950	96259951	rs17369927	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12q23.1	NR	rs17369927-A		2E-9		0.09	[0.07-0.11] unit increase	NR [NR]	N
1319	chr12	96261567	96261568	rs6538678	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	12q23.1	CCDC38, FLJ40089	rs6538678-A		2E-6	(Additive)	1.57	[1.30-1.88]	Affymetrix, Illumina [1621689] (imputed)	N
1319	chr12	96271427	96271428	rs1036429	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	12q23.1	CCDC38	rs1036429-?	NR	1E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1319	chr12	96271427	96271428	rs1036429	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	12q23.1	CCDC38	rs1036429-T	0.20	2E-11	(FEV1/FVC)	0.038	[0.026-0.050] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1319	chr12	96283431	96283432	rs1436124	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	12q23.1	NR	rs1436124-G	0.720134929	9E-6		0.1649891	[0.092-0.238] unit decrease	Affymetrix [536506]	N
1319	chr12	96306512	96306513	rs187475866	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillus B abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs187475866-A	0.0204939	1E-8		0.169095	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1319	chr12	96306512	96306513	rs187475866	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillales abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs187475866-A	0.0204939	1E-8		0.0730626	[0.048-0.098] unit increase	Illumina [7980478] (imputed)	N
1319	chr12	96306512	96306513	rs187475866	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillaceae abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs187475866-A	0.0204939	2E-8		0.078972	[0.052-0.106] unit increase	Illumina [7980478] (imputed)	N
1319	chr12	96314794	96314795	rs7954638	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q23.1	HAL, AMDH1	rs7954638-A	0.48	7E-15	(Histidine)	0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1319	chr12	96315167	96315168	rs75341400	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs75341400-G	0.901725	6E-36		0.0876316	[0.074-0.101] unit increase	NR [11722792] (imputed)	N
1319	chr12	96322601	96322602	rs10777753	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	12q23.1		rs10777753-A	0.39793	7E-8		1.182	NR	Affymetrix [7846216] (imputed)	N
1319	chr12	96326219	96326220	rs10859988	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting histidine	4,734 individuals	NA	12q23.1		rs10859988-T	0.386597548	6E-15		0.165048	[0.12-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1319	chr12	96330580	96330581	rs4762254	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	12q23.1	CCDC38	rs4762254-?	NR	7E-18	(His)	0.088815935	NR unit decrease	Illumina [609262]	N
1319	chr12	96330580	96330581	rs4762254	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	12q23.1	CCDC38	rs4762254-?	NR	2E-13	(His)	0.09186159	NR unit decrease	Illumina [609262]	N
1320	chr12	96355209	96355210	rs143387210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs143387210-T	0.993402	2E-10		0.166119	[0.11-0.22] unit increase	NR [11722792] (imputed)	N
1320	chr12	96358528	96358529	rs10745742	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels (dietary vitamin D intake interaction)	39,868 European ancestry individuals	2,113 European ancestry individuals	12q23.1	AMDHD1	rs10745742-T	NR	1E-7				Affymetrix, Illumina [at least 1200000] (imputed)	N
1320	chr12	96358528	96358529	rs10745742	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	12q23.1	AMDHD1	rs10745742-T	NR	2E-20		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [up to 3600000] (imputed)	N
1320	chr12	96371004	96371005	rs10777764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	12q23.1	NR	rs10777764-A	NR	1E-26		0.0308	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1320	chr12	96371730	96371731	rs61937878	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs61937878-C	0.993603	3E-248		0.872731	[0.82-0.92] unit decrease	NR [11722792] (imputed)	N
1320	chr12	96371730	96371731	rs61937878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	12q23.1	NR	rs61937878-T	NR	1E-20		0.1454	[0.11-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1320	chr12	96371730	96371731	rs61937878	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	12q23.1	NR	rs61937878-T	0.006418	4E-22		0.119493	[0.095-0.144] unit increase	Affymetrix [16668957] (imputed)	N
1320	chr12	96371766	96371767	rs150591434	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	12q23.1		rs150591434-?	NR	2E-14		0.222847	[0.16-0.28] unit increase	NR [9800000] (imputed)	N
1320	chr12	96372026	96372026	rs11454735	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q23.1	HAL	rs11454735-A	0.331988	8E-27	(trans-urocanate)	0.254	[0.21-0.3] unit increase	Illumina [13039987] (imputed)	N
1320	chr12	96374056	96374057	rs721199	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	12q23.1	HAL	rs721199-T	0.463	4E-8		0.06	[0.04-0.08] unit decrease	NR [13607369] (imputed)	N
1320	chr12	96375681	96375682	rs10859995	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	12q23.1		rs10859995-T	0.42	3E-33		0.105	[0.087-0.123] unit decrease	Affymetrix [812428]	N
1320	chr12	96375681	96375682	rs10859995	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q23.1		rs10859995-?	NR	5E-100		0.0436264	[0.04-0.048] unit increase	NR [6912294] (imputed)	N
1320	chr12	96375681	96375682	rs10859995	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12q23.1		rs10859995-T	0.417366	9E-91		0.04	[0.036-0.044] unit increase	NR [7250403] (imputed)	N
1320	chr12	96375681	96375682	rs10859995	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	12q23.1	NR	rs10859995-C	0.581322	7E-89		0.039396	[0.036-0.043] unit decrease	Affymetrix [16668957] (imputed)	N
1320	chr12	96378770	96378771	rs3819817	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	12q23.1	HAL	rs3819817-T	0.21	3E-10		0.04	[0.02-0.06] nmol/L increase	Affymetrix, Illumina [11026511] (imputed)	N
1320	chr12	96378806	96378807	rs10859996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	12q23.1		rs10859996-T	NR	4E-11		0.0658	[0.046-0.085] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1320	chr12	96378806	96378807	rs10859996	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	12q23.1	HAL	rs10859996-C	0.6351	2E-10		1.0662	NR	Affymetrix, Illumina [NR] (imputed)	N
1320	chr12	96379805	96379806	rs3213737	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12q23.1	HAL	rs3213737-G	0.48	2E-25	(trans-urocanate)	0.227	[0.18-0.27] unit decrease	Illumina [7750367] (imputed)	N
1320	chr12	96379805	96379806	rs3213737	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	12q23.1	HAL	rs3213737-G	0.422027	1E-8		1.05	[1.03-1.07]	Affymetrix [7600000] (imputed)	N
1320	chr12	96379805	96379806	rs3213737	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	12q23.1	HAL	rs3213737-G	NR	1E-7		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1320	chr12	96379805	96379806	rs3213737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	12q23.1		rs3213737-?	NR	3E-48				NR [~ 8900000] (imputed)	N
1320	chr12	96379883	96379884	rs117991621	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs117991621-C	0.995043	4E-79		0.553629	[0.5-0.61] unit decrease	NR [11722792] (imputed)	N
1320	chr12	96382643	96382644	rs7308827	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q23.1		rs7308827-?	NR	9E-52		0.0402783	[0.035-0.045] unit decrease	NR [6912294] (imputed)	N
1320	chr12	96384121	96384122	rs60881496	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.1	HAL	rs60881496-?		8E-6				Illumina [4322238] (imputed)	N
1320	chr12	96388589	96388590	rs143854097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs143854097-G	0.998586	1E-37		0.704753	[0.6-0.81] unit decrease	NR [11722792] (imputed)	N
1320	chr12	96390889	96390890	rs74620184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	12q23.1	NR	rs74620184-A	NR	3E-13		0.0433	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1320	chr12	96403198	96403199	rs2072510	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q23.1	NR	rs2072510-?	NR	5E-11	(Histidine, conditioned)	0.0689075	[0.048-0.089] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1320	chr12	96422376	96422377	rs2247570	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q23.1	LTA4H	rs2247570-T	0.7075	4E-6	(LTA4H, 3204_2_2)	0.12363422	[0.071-0.176] unit decrease	Illumina [> 1000000] (imputed)	N
1320	chr12	96424664	96424665	rs2247304	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	12q23.1		rs2247304-?	NR	4E-6				Illumina [1365315]	N
1321	chr12	96471121	96471122	rs77974165	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q23.1		rs77974165-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1321	chr12	96471426	96471427	rs112906795	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q23.1		rs112906795-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1321	chr12	96479266	96479267	rs2660869	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	12q23.1	LTA4H	rs2660869-C	0.02	3E-6		4.39	[2.55-6.23] cm increase	Affymetrix [2073674] (imputed)	N
1321	chr12	96492447	96492448	rs2540513	27492634	Du Y	2016-08-01	Endocr Relat Cancer	Genetic associations with neuroendocrine tumor risk: results from a genome-wide association study.	Small intestine neuroendocrine tumor	293 European ancestry cases, 4,542 European ancestry controls, up to 241 controls	NA	12q23.1	ELK3, LTA4H	rs2540513-?	NR	3E-9		1.87	[NR]	Affymetrix [613218]	N
1321	chr12	96495675	96495675	rs756743052	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs756743052-CTTAACTA,rs756743052-CTTAACTA	0.906565	9E-12		0.0490646	[0.035-0.063] unit decrease	NR [11722792] (imputed)	N
1321	chr12	96495675	96495675	rs756743052	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs756743052-CTTAACTA,rs756743052-CTTAACTA	0.906565	9E-12		0.0490646	[0.035-0.063] unit decrease	NR [11722792] (imputed)	N
1321	chr12	96505261	96505262	rs61938803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q23.1		rs61938803-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1321	chr12	96555164	96555165	rs77034926	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	12q23.1	NR	rs77034926-A	0.1805	2E-6		0.3403	[0.2-0.48] unit decrease	Illumina [~ 600000] (imputed)	N
1321	chr12	96583857	96583858	rs61938844	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12q23.1	LTA4H, ELK3	rs61938844-A	0.0288011380296066	6E-29		0.1861	[0.15-0.22] SD increase	Illumina [22400000] (imputed)	N
1322	chr12	96604446	96604447	rs10735341	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12q23.1	ELK3	rs10735341-G	0.878918193913926	2E-11		0.0463	[0.033-0.06] SD increase	Illumina [22400000] (imputed)	N
1322	chr12	96612761	96612762	rs4762284	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	12q23.1	ELK3	rs4762284-T	0.32	4E-7		1.15	[1.12-1.19]	Affymetrix, Illumina [~ 6118121] (imputed)	N
1322	chr12	96612761	96612762	rs4762284	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	12q23.1	ELK3	rs4762284-?	NR	3E-7		1.21	[1.12-1.30]	Illumina [6755715] (imputed)	N
1322	chr12	96612761	96612762	rs4762284	27694927	Vijayakrishnan J	2016-10-03	Leukemia	A genome-wide association study identifies risk loci for childhood acute lymphoblastic leukemia at 10q26.13 and 12q23.1.	Acute lymphoblastic leukemia in childhood (B cell precursor)	1,658 European ancestry child cases, 7,224 European ancestry controls	1,109 child cases, 1,412 European ancestry child cases, 2,085 controls, 1,479 European ancestry controls	12q23.1	ELK3	rs4762284-T	0.3	8E-9		1.19	[1.12-1.26]	Illumina [11700000] (imputed)	N
1322	chr12	96617303	96617304	rs2302902	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (community state type)	171 Kenyan ancestry individuals	NA	12q23.1	ELK3	rs2302902-T	0.2	3E-6		0.41	NR unit increase	Illumina [336151] (imputed)	N
1322	chr12	96618762	96618763	rs2300553	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q23.1		rs2300553-C	0.39	6E-13		7.2	z score increase	Affymetrix [9061022] (imputed)	N
1322	chr12	96618762	96618763	rs2300553	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.1		rs2300553-C	0.39	5E-13		7.23	z score increase	Affymetrix [9061022] (imputed)	N
1322	chr12	96618762	96618763	rs2300553	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.1	NR	rs2300553-C	0.3547	4E-14				NR [9056863] (imputed)	N
1322	chr12	96618762	96618763	rs2300553	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 204)	19,670 European ancestry individuals	NA	12q23.1		rs2300553-?	NR	4E-8				NR [9705931] (imputed)	N
1322	chr12	96624298	96624299	rs6538703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q23.1		rs6538703-T	NR	8E-10		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1322	chr12	96634204	96634205	rs11835157	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	12q23.1	ELK3	rs11835157-?		6E-6		0.324	[NR] unit increase	Illumina [430487]	N
1322	chr12	96655235	96655236	rs4762293	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs4762293-?	NR	4E-10				Affymetrix [NR]	N
1322	chr12	96676942	96676943	rs61938858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.1		rs61938858-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1322	chr12	96717094	96717095	rs7134060	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q23.1	CDK17	rs7134060-A	0.446	4E-11		0.0999	[0.07-0.129] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1323	chr12	96788317	96788318	rs75362303	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12q23.1		rs75362303-T	0.962932	9E-6		0.0301766	[0.017-0.043] unit decrease	Illumina [13900000] (imputed)	N
1323	chr12	96807116	96807117	rs1470106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.1	NR	rs1470106-A	0.476264	6E-12				Affymetrix, Illumina [19872809] (imputed)	N
1323	chr12	96807116	96807117	rs1470106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q23.1		rs1470106-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1323	chr12	96807916	96807917	rs11108495	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	12q23.1	C12orf55	rs11108495-T	0.45	4E-6		1.55	[0.89-2.21] kg increase	Affymetrix [2073674] (imputed)	N
1323	chr12	96811385	96811386	rs10745763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q23.1	RP11-510I5.4	rs10745763-T	0.424182	4E-9		0.013180475	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
1323	chr12	96811385	96811386	rs10745763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q23.1	NR	rs10745763-T	0.423316	2E-11		0.01349	[0.0095-0.0174] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1323	chr12	96858361	96858362	rs12423247	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	12q23.1	CDK17	rs12423247-?	NR	3E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1324	chr12	96945262	96945263	rs199911028	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	12q23.1	CFAP54	rs199911028-G	NR	3E-6		2.966	[1.89-4.67]	Illumina [848325]	N
1324	chr12	96976071	96976072	rs2111145	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs2111145-T	0.0131137	1E-8		0.0930838	[0.061-0.125] unit increase	Illumina [7980478] (imputed)	N
1324	chr12	96976071	96976072	rs2111145	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs2111145-T	0.0131137	4E-8		0.109994	[0.071-0.149] unit increase	Illumina [7980478] (imputed)	N
1324	chr12	96984889	96984890	rs117662686	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-488 sp000434055 abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs117662686-A	0.0389413	1E-8		0.140509	[0.092-0.189] unit increase	Illumina [7980478] (imputed)	N
1325	chr12	97063356	97063357	rs11108631	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.1	C12orf55	rs11108631-?		7E-6				Illumina [4322238] (imputed)	N
1325	chr12	97077549	97077549	rs201360344	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea during REM sleep (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	12q23.1	C12orf55	rs201360344-G		6E-7		0.478	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1326	chr12	97199655	97199656	rs10860097	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	12q23.1	NEDD1	rs10860097-T	0.02	2E-6		3.04	[1.92-4.81]	Illumina [7033776] (imputed)	N
1326	chr12	97199655	97199656	rs10860097	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	12q23.1	NEDD1	rs10860097-T	0.02	5E-6		2.38	[1.64-3.45]	Illumina [7033776] (imputed)	N
1327	chr12	97274299	97274300	rs2098414	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs2098414-?	NR	1E-12				Affymetrix [NR]	N
1327	chr12	97274479	97274480	rs252195	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs252195-?	NR	2E-12				Affymetrix [NR]	N
1327	chr12	97349365	97349366	rs75026370	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		NEDD1	rs75026370-A	0.03	6E-6		0.29	[0.16-0.42] unit increase	Illumina [1679420] (imputed)	N
1328	chr12	97412326	97412327	rs182057829	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.1	Intergenic	rs182057829-G	1.0	5E-6	(AA)	0.557	unit increase	Illumina [NR] (imputed)	N
1328	chr12	97414770	97414771	rs559243300	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	12q23.1		rs559243300-A	0.998685	1E-8		0.335394	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
1328	chr12	97434219	97434220	rs6538761	24189344	Xia K	2013-11-05	Mol Psychiatry	Common genetic variants on 1p13.2 associate with risk of autism.	Autism	275 Chinese ancestry cases and 550 Chinese ancestry controls from 275 trios, 136 Chinese ancestry cases, 984 Chinese ancestry controls	1,299 European ancestry cases and 2,598 European ancestry controls from 1,299 trios	12q23.1	NEDD1	rs6538761-A	NR	2E-6		1.24	[NR]	Illumina [702234] (imputed)	N
1328	chr12	97487003	97487004	rs148966106	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		NEDD1	rs148966106-T	0.03	7E-6		0.28	[0.16-0.40] unit increase	Illumina [1679420] (imputed)	N
1328	chr12	97498714	97498715	rs4294610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.1	NR	rs4294610-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1328	chr12	97498716	97498717	rs4294611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.1		rs4294611-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1329	chr12	97528139	97528140	rs7953959	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.1	NR	rs7953959-C	0.49043844534413	8E-6	(IGP2)	0.1389	[0.078-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1329	chr12	97541531	97541532	rs10860153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q23.1		rs10860153-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1329	chr12	97555084	97555085	rs61941722	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.1	NR	rs61941722-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1329	chr12	97562755	97562756	rs759111467	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q23.1	RMST	rs759111467-A	3.0E-4	2E-6		3.07	[1.94-4.85]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1329	chr12	97566175	97566176	rs7136732	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12q23.1	NEDD1	rs7136732-C	0.8079	4E-8		0.013485254	[0.0087-0.0183] unit increase	Illumina [9339358] (imputed)	N
1329	chr12	97584356	97584357	rs55966114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q23.1	NA	rs55966114-T	0.1885	2E-9		0.0146	[0.0099-0.0193] unit increase	NR [~ 27400000] (imputed)	N
1329	chr12	97596102	97596103	rs139427007	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	12q23.1	XR_246024.1	rs139427007-?	0.01	4E-7		11.0	[NR]	Affymetrix [4893794] (imputed)	N
1329	chr12	97624409	97624410	rs78057126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q23.1		rs78057126-T	NR	3E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1329	chr12	97641185	97641186	rs7134221	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	12q23.1	intergenic	rs7134221-C	0.49	5E-6		0.038	unit increase	Illumina [~ 6300000] (imputed)	N
1330	chr12	97666477	97666478	rs2216144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.1		rs2216144-T	0.5306	3E-12		0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1330	chr12	97669258	97669259	rs4140762	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q23.1	RP11-541G9.2	rs4140762-G	0.4949	7E-10		0.012445853	[0.0085-0.0164] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1330	chr12	97669258	97669259	rs4140762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q23.1	Intergenic	rs4140762-A	0.5295	7E-9	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1330	chr12	97669258	97669259	rs4140762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q23.1	Intergenic	rs4140762-A	0.5292	4E-12	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1330	chr12	97673416	97673417	rs10161336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q23.1	Intergenic	rs10161336-A	0.5037	8E-9	(MTAG)	0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1330	chr12	97676615	97676616	rs10745789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q23.1		rs10745789-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1330	chr12	97676615	97676616	rs10745789	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.1	Intergenic	rs10745789-T	0.4957	1E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1330	chr12	97689767	97689768	rs10777845	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q23.1	intergenic	rs10777845-?	0.66	5E-6	(Dominant)	1.12	[1.07-1.17]	Affymetrix [319222]	N
1330	chr12	97718164	97718165	rs257950	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q23.1	C12orf63	rs257950-?	NR	2E-6	(gamma aminoisobutyric acid)	1.3947778	[0.81-1.97] unit increase	Affymetrix [at least 2500000] (imputed)	N
1330	chr12	97736595	97736596	rs1582341	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	12q23.1	NEDD1, RMST	rs1582341-?	NR	2E-6			NR	Illumina [up to 317503]	N
1330	chr12	97753151	97753152	rs10507084	33243845	Strausz S	2020-11-26	Eur Respir J	Genetic analysis of obstructive sleep apnoea discovers a strong association with cardiometabolic health.	Obstructive sleep apnea (BMI adjusted)	12,759 Finnish ancestry cases, 146,972 Finnish ancestry controls	NR	12q23.1	RMST, NEDD1	rs10507084-T	0.18	1E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1330	chr12	97756210	97756211	rs73238041	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q23.1	NR	rs73238041-?	NR	6E-6		4.52	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1330	chr12	97779247	97779248	rs557027608	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q23.1	RMST	rs557027608-A	6.0E-4	3E-7		2.34	[1.69-3.24]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1331	chr12	97792586	97792587	rs4373984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.1		rs4373984-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1331	chr12	97792586	97792587	rs4373984	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.1	NR	rs4373984-?	NR	2E-6	(female)	0.11571	[0.069-0.163] unit decrease	Affymetrix [7794483] (imputed)	N
1331	chr12	97792586	97792587	rs4373984	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.1	NR	rs4373984-?	NR	1E-8		0.12516	[0.082-0.168] unit decrease	Affymetrix [7794483] (imputed)	N
1331	chr12	97792786	97792787	rs10777859	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.1		rs10777859-A	0.4751	3E-8	(conditional-joint)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1331	chr12	97796626	97796627	rs4399366	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.1	intergenic	rs4399366-T	0.2829	7E-13		0.015	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1331	chr12	97799523	97799524	rs10128888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.1		rs10128888-A	0.3149	4E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1331	chr12	97799523	97799524	rs10128888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.1	Intergenic	rs10128888-A	0.3149	1E-8	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr12	97801071	97801072	rs7953792	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q23.1	Intergenic	rs7953792-?	NR	4E-6		1.474	[NR]	Affymetrix [492217] (imputed)	N
1331	chr12	97848226	97848227	rs113036477	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q23.1	NR	rs113036477-C	0.9381	4E-13		0.0715	[0.052-0.091] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1331	chr12	97848774	97848775	rs77864822	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q23.1	RMST	rs77864822-A	0.9324	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1331	chr12	97848909	97848910	rs6538804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q23.1		rs6538804-G	NR	7E-10		0.0397	[0.027-0.052] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1331	chr12	97848909	97848910	rs6538804	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	12q23.1	RMST	rs6538804-C	0.6086	9E-14		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1331	chr12	97849119	97849120	rs6538805	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q23.1	NR	rs6538805-C	0.4736	1E-14		0.0303	[0.023-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1331	chr12	97850214	97850215	rs10860209	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q23.1	RMST	rs10860209-C	0.589	6E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1331	chr12	97850589	97850590	rs76369685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q23.1		rs76369685-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1331	chr12	97851001	97851002	rs74628648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q23.1	NR	rs74628648-T	NR	7E-13		0.0379	[0.028-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1331	chr12	97851001	97851002	rs74628648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	12q23.1	NR	rs74628648-T	NR	2E-15		0.0429	[0.032-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1331	chr12	97858655	97858656	rs11109043	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q23.1	NR	rs11109043-A	NR	6E-6	(female)	0.1329	[0.075-0.19] unit decrease	Illumina [11133794] (imputed)	N
1331	chr12	97860591	97860592	rs79621919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q23.1		rs79621919-A	NR	5E-15		0.0384	[0.029-0.048] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1331	chr12	97864142	97864143	rs721156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12q23.1		rs721156-T	NR	6E-17		0.0443	[0.034-0.055] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1331	chr12	97873046	97873047	rs140497890	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Geobacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs140497890-C	0.0116259	2E-8		0.0964814	[0.063-0.13] unit decrease	Illumina [7980478] (imputed)	N
1331	chr12	97876905	97876906	rs75718479	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	12q23.1	RMST	rs75718479-C	0.877	1E-6		1.22	[NR]	Illumina [4550396] (imputed)	N
1331	chr12	97885495	97885496	rs61943698	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q23.1		rs61943698-?	NR	1E-6		1.1552513	[1.08966952940162-1.22478012686337]	Illumina [up to 7827597] (imputed)	N
1331	chr12	97901269	97901270	rs11109072	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	12q23.1	RMST	rs11109072-A	0.03	4E-9		1.67	[1.41-1.99]	Affymetrix [~ 2000000] (imputed)	N
1332	chr12	97916471	97916472	rs7963257	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	12q23.1	RMST	rs7963257-G	NR	1E-6		1.2	[1.12-1.29]	Affymetrix, Illumina [6265045] (imputed)	N
1332	chr12	97921281	97921282	rs17027126	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q23.1		rs17027126-?	NR	2E-7		0.5984385	[0.37-0.82] unit increase	Illumina [9875426] (imputed)	N
1332	chr12	97924833	97924834	rs61943702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q23.1		rs61943702-A	NR	1E-11		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1332	chr12	97928436	97928437	rs11109097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.1		rs11109097-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1332	chr12	97938982	97938983	rs1349414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q23.1		rs1349414-C	NR	4E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1332	chr12	97945027	97945028	rs17334543	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	12q23.1		rs17334543-?	NR	3E-6		0.4372002	[0.26-0.62] unit increase	Illumina [9906551] (imputed)	N
1332	chr12	97945027	97945028	rs17334543	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q23.1		rs17334543-?	NR	5E-7		0.6459637	[0.39-0.9] unit increase	Illumina [9842460] (imputed)	N
1332	chr12	97981271	97981272	rs12304188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.1		rs12304188-A	0.842	8E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1332	chr12	97982700	97982701	rs12372115	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12q23.1		rs12372115-G	0.929281	2E-7		0.02	[0.012-0.028] unit decrease	NR [7250403] (imputed)	N
1332	chr12	97991748	97991749	rs74737187	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	12q23.1	NR	rs74737187-G	NR	6E-6		0.7534	[0.43-1.08] SD units increase	NR [10700000] (imputed)	N
1332	chr12	98024654	98024655	rs2122661	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	12q23.1	NR	rs2122661-?		3E-6		97.35	[55.29-139.41] unit increase	Illumina [498648]	N
1332	chr12	98027690	98027691	rs11109142	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	12q23.1	AF429306	rs11109142-G	0.03	4E-6	(Age 8)	0.31	[0.17-0.45] unit increase	Illumina [2293137] (imputed)	N
1332	chr12	98029803	98029804	rs138476573	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q23.1		rs138476573-?	NR	8E-8		0.7780519	[0.5-1.06] unit increase	Illumina [9875426] (imputed)	N
1332	chr12	98039270	98039271	rs34553	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q23.1	TMPO	rs34553-?	NR	8E-6	(PC 34:3)	0.1724268	[0.097-0.248] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1333	chr12	98051360	98051361	rs7969328	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q23.1	NR	rs7969328-?	NR	9E-7		4.912	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1333	chr12	98061145	98061146	rs248812	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	12q23.1	RNU6-36, MIR135A2	rs248812-A	0.83	9E-7		0.26	[0.16-0.36] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
1333	chr12	98130199	98130200	rs75717531	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	12q23.1		rs75717531-?	NR	8E-6		0.4569407	[0.26-0.66] unit decrease	Illumina [9875426] (imputed)	N
1333	chr12	98144191	98144192	rs73373089	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	12q23.1	MIR135A2, MIR4495	rs73373089-C	0.14	6E-6		0.29	[0.17-0.41] unit decrease	Illumina [7992243] (imputed)	N
1334	chr12	98183718	98183719	rs4762194	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	12q23.1	MIR135A2, MIR4495	rs4762194-A	0.16	6E-7		0.29	[0.17-0.41] unit decrease	Illumina [8066948] (imputed)	N
1334	chr12	98183718	98183719	rs4762194	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	12q23.1	MIR135A2, MIR4495	rs4762194-A	0.16	5E-6		0.27	[0.15-0.39] unit decrease	Illumina [8066948] (imputed)	N
1334	chr12	98185247	98185248	rs249625	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	12q23.1	intergenic	rs249625-G	0.583626	3E-6		0.36429	[0.21-0.51] unit decrease	Illumina [at least 520076] (imputed)	N
1334	chr12	98207976	98207977	rs11109228	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.1	NR	rs11109228-T	NR	1E-10		0.0193	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1334	chr12	98290790	98290791	rs4762443	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Diastolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA		LOC643711, MIR4303	rs4762443-T	0.05	9E-7	(Hispanic/Latino)	0.67	[0.4-0.94] unit increase	Illumina [up to 13042663] (imputed)	N
1334	chr12	98295368	98295369	rs1551064	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	12q23.1	intergenic	rs1551064-C		4E-6				Illumina [1690491] (imputed)	N
1335	chr12	98371272	98371273	rs10492268	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	12q23.1		rs10492268-T	0.552	2E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
1336	chr12	98440914	98440915	rs118013063	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	12q23.1	NR	rs118013063-?	NR	5E-6		0.8074	[0.49-1.12] unit decrease	Illumina [at least 560000] (imputed)	N
1336	chr12	98452150	98452151	rs10860276	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	12q23.1	MIR4303, SLC9A7P1	rs10860276-G	0.33	3E-6	(Right facial angle of ps-ex-go)	0.496	[NR] unit decrease	Affymetrix [311944]	N
1336	chr12	98491482	98491483	rs74448529	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q23.1		rs74448529-?	NR	1E-6		1.0920249	[1.05398182763247-1.13144126178533]	Illumina [up to 7827597] (imputed)	N
1336	chr12	98542698	98542699	rs10860295	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q23.1	RP11-181C3.1	rs10860295-T	0.55235	2E-9		0.00851585	[0.0058-0.0113] unit decrease	Affymetrix [12370749]	N
1336	chr12	98564215	98564216	rs1842329	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	12q23.1	LOC100131529	rs1842329-T	NR	4E-7		1.1168443	[1.07016653931685-1.1655568622743]	Illumina [at least 6195093] (imputed)	N
1337	chr12	98585581	98585582	rs369920026	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	12q23.1		rs369920026-A	0.006	1E-8		1.68	[1.4-2.02]	Affymetrix, Illumina [NR] (imputed)	N
1337	chr12	98602106	98602107	rs777195927	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q23.1	RP11-690J15.1	rs777195927-A	0.0018	2E-7		0.6178	[0.39-0.85] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1337	chr12	98634989	98634990	rs12230740	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q23.1	NR	rs12230740-?	NR	4E-6		0.0080286	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1337	chr12	98646515	98646516	rs12370612	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q23.1	NR	rs12370612-G	0.423	2E-8		0.00611686	[0.004-0.0083] unit increase	NR [9732723] (imputed)	N
1338	chr12	98765303	98765304	rs79183494	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q23.1	NR	rs79183494-A	0.01394	3E-8	(HRG)	0.08948	NR unit increase	Illumina [1671387] (imputed)	N
1338	chr12	98772974	98772975	rs7311622	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q23.1	NA	rs7311622-T	0.4526	3E-11		0.0119	[0.0084-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
1338	chr12	98779785	98779786	rs115585699	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	12q23.1	MIR4303, SLC9A7P1	rs115585699-T	0.975	3E-6		1.8	[1.42-2.29]	Affymetrix, Illumina [12148595] (imputed)	N
1338	chr12	98808143	98808144	rs112650478	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.1	NR	rs112650478-?		9E-6				Illumina [4322238] (imputed)	N
1339	chr12	98845330	98845331	rs829880	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q23.1	Intergenic	rs829880-?	NR	8E-6		1.348	[NR]	Affymetrix [492217] (imputed)	N
1339	chr12	98864060	98864061	rs73136449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q23.1		rs73136449-G	NR	3E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1339	chr12	98879605	98879606	rs829883	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	12q23.1	Intergenic	rs829883-?		4E-6		1.3734376	[NR]	Affymetrix [492217] (imputed)	N
1339	chr12	98901199	98901200	rs7301634	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q23.1	NR	rs7301634-A	0.810267	3E-9		0.0191215	[0.013-0.025] unit increase	Affymetrix [16585745] (imputed)	N
1340	chr12	98988806	98988807	rs875899	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	12q23.1	NR	rs875899-?	NR	4E-6		0.1253	[0.072-0.178] unit increase	Illumina [~ 7800000] (imputed)	N
1340	chr12	98999110	98999111	rs4277163	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF5	5,359 Icelandic ancestry individuals	NA	12q23.1		rs4277163-T	0.2853	8E-14		0.151876	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1340	chr12	99001560	99001561	rs139755745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.1	AC013283.1	rs139755745-A	NR	4E-10		0.0197416	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1340	chr12	99009894	99009895	rs10860351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q23.1		rs10860351-A	NR	3E-8		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1340	chr12	99011271	99011272	rs9668109	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Barrett's esophagus x pack-years of smoking exposure interaction	3,104 European ancestry cases, 2,182 European ancestry controls	NA	12q23.1	IKIP	rs9668109-G	0.91	6E-7		1.0204082	[NR]	Illumina [993501]	N
1340	chr12	99025405	99025406	rs61932023	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.1	IKBIP	rs61932023-C	0.332	4E-13	(Complement C1q tumor necrosis factor-related protein 5, C1QTNF5.7810.20.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1341	chr12	99108997	99108998	rs11109579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q23.1	APAF1	rs11109579-T	NR	3E-9		0.0186012	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
1341	chr12	99112322	99112323	rs12581119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.1	APAF1	rs12581119-G	NR	5E-8		0.0168555	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1341	chr12	99116919	99116920	rs767754397	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	12q23.1		rs767754397-?	NR	7E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
1341	chr12	99128871	99128872	rs116928965	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	12q23.1	ANKS1B	rs116928965-A	0.13	3E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1341	chr12	99190371	99190372	rs2036225	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	12q23.1	ANKS1B	rs2036225-T	0.41	8E-6	(Meta)			Illumina [254145]	N
1341	chr12	99219735	99219736	rs7960581	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	12q23.1	ANKS1B	rs7960581-?	0.088001	3E-7		1.633271	[1.353663-1.970635]	Affymetrix, Illumina [NR] (imputed)	N
1342	chr12	99243020	99243021	rs12227147	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	12q23.1	ANKS1B	rs12227147-?	NR	1E-6		0.31	[NR] unit decrease	Illumina [1365181]	N
1342	chr12	99290312	99290313	rs201412	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	12q23.1	ANKS1B	rs201412-?	NR	1E-7	(SCR Amplitude)	0.045	[0.027-0.063] unit increase	Illumina [527829]	N
1342	chr12	99334528	99334529	rs483610	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.1	ANKS1B	rs483610-G	0.387	7E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1343	chr12	99462481	99462485	rs10554812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q23.1		rs10554812-C	NR	6E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1344	chr12	99493734	99493735	rs10745841	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q23.1	ANKS1B	rs10745841-?		1E-8				NR [6786993] (imputed)	N
1344	chr12	99493734	99493735	rs10745841	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q23.1	NR	rs10745841-C	NR	1E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1344	chr12	99494985	99494986	rs10735362	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q23.1	NR	rs10735362-?		5E-9				NR [8377093]	N
1344	chr12	99496029	99496030	rs10745843	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	12q23.1	NR	rs10745843-A	0.5845	5E-9		0.065029874	[0.043-0.087] unit increase	NR [NR]	N
1344	chr12	99496029	99496030	rs10745843	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q23.1	ANKS1B	rs10745843-A	0.621	2E-7		1.06099	[1.04-1.08]	NR [9372253] (imputed)	N
1344	chr12	99496029	99496030	rs10745843	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	12q23.1	ANKS1B	rs10745843-A	0.621	5E-7		1.08091		NR [9372253] (imputed)	N
1344	chr12	99496701	99496702	rs4762557	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4762557-?	NR	1E-8				NR [2625067]	N
1344	chr12	99496701	99496702	rs4762557	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs4762557-?	NR	1E-9				NR [2625067]	N
1344	chr12	99498186	99498187	rs10860392	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	12q23.1	ANKS1B	rs10860392-T		2E-6	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
1344	chr12	99498639	99498640	rs4762559	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	12q23.1	NR	rs4762559-?		6E-9				NR [520857]	N
1344	chr12	99517067	99517068	rs2372730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q23.1		rs2372730-C	NR	2E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1344	chr12	99553807	99553808	rs660884	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	12q23.1	NR	rs660884-?	NR	2E-6		0.0362	[0.021-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
1344	chr12	99553814	99553815	rs660879	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.1	NR	rs660879-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1344	chr12	99553814	99553815	rs660879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.1		rs660879-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1344	chr12	99560182	99560183	rs651548	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q23.1	NA	rs651548-A	0.3634	2E-16		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1344	chr12	99573425	99573426	rs2372716	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q23.1	NR	rs2372716-C	NR	3E-15		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1344	chr12	99588916	99588917	rs2712667	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q23.1	ANKS1B	rs2712667-G	0.356054	2E-11		0.00962407	[0.0068-0.0124] unit increase	Affymetrix [12370749]	N
1345	chr12	99633188	99633189	rs2131167	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.1		rs2131167-A	0.4458	2E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1345	chr12	99633188	99633189	rs2131167	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.1	Intergenic	rs2131167-A	0.4458	6E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr12	99639929	99639930	rs923724	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q23.1	NA	rs923724-C	0.6196	2E-15		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1345	chr12	99640158	99640159	rs77436242	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q23.1	NR	rs77436242-C	0.0505	1E-7		0.0135118	[0.0085-0.0185] unit decrease	NR [9732723] (imputed)	N
1345	chr12	99640556	99640557	rs1552759	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q23.1	ANKS1B	rs1552759-T	0.343693	6E-10		0.00916958	[0.0063-0.0121] unit increase	Affymetrix [12370749]	N
1345	chr12	99681671	99681672	rs61940242	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q23.1	NR	rs61940242-?	NR	2E-6		4.786	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1345	chr12	99692006	99692007	rs10860416	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q23.1	ANKS1B	rs10860416-G	0.30500000000000005	2E-6		1.0613008		NR [9372253] (imputed)	N
1345	chr12	99727133	99727134	rs146024394	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.1	NR	rs146024394-C		5E-7		0.4031	[0.24-0.56] SD units increase	NR [10700000] (imputed)	N
1346	chr12	99757052	99757053	rs10128864	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q23.1	NR	rs10128864-C	0.137	4E-7		0.00799159	[0.0049-0.0111] unit increase	NR [9732723] (imputed)	N
1346	chr12	99785813	99785814	rs142161979	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	12q23.1	ANKS1B	rs142161979-?	NR	9E-9				Illumina [430492]	N
1346	chr12	99788252	99788253	rs9805016	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	12q23.1	ANKS1B	rs9805016-?	NR	9E-6	(total PUFA)			Illumina [621723]	N
1346	chr12	99803389	99803390	rs7977812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q23.1		rs7977812-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1346	chr12	99816841	99816842	rs7968606	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	12q23.1	ANKS1B	rs7968606-?	NR	3E-7	(olanzapine)	10.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
1346	chr12	99848899	99848900	rs2133896	31462767	Sun Y	2019-08-28	Mol Psychiatry	Identification of novel risk loci with shared effects on alcoholism, heroin, and methamphetamine dependence.	Alcohol dependence or heroin dependence or methamphetamine dependence	521 Han Chinese ancestry alcohol dependence cases, 1,026 Han Chinese ancestry heroin dependence cases, 1,749 Han Chinese ancestry methamphetamine dependence cases, 2,859 Han Chinese ancestry controls	146 Han Chinese ancestry alcohol dependence cases, 1,045 Han Chinese ancestry heroin dependence cases, 763 Han Chinese ancestry methamphetamine dependence cases, 1,904 Han Chinese ancestry controls	12q23.1	ANKS1B	rs2133896-T	0.2215	4E-9		0.104	[0.069-0.139] unit increase	Illumina [383065] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q23.1	NR	rs191591035-G	0.997014	3E-10		0.222275	[0.15-0.29] unit increase	Affymetrix [16577313] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q23.1	NR	rs191591035-G	0.996994	9E-25		0.0926581	[0.074-0.112] unit increase	Affymetrix [16582909] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q23.1	NR	rs191591035-G	0.997031	7E-14		0.0993287	[0.071-0.128] unit increase	Affymetrix [16585854] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q23.1	NR	rs191591035-G	0.996953	1E-12		0.0922495	[0.066-0.118] unit increase	Affymetrix [16582621] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q23.1	NR	rs191591035-G	0.996994	5E-24		0.102505	[0.081-0.124] unit increase	Affymetrix [16582965] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q23.1	NR	rs191591035-G	0.997031	1E-13		0.113386	[0.081-0.146] unit increase	Affymetrix [16585866] (imputed)	N
1346	chr12	99868284	99868285	rs191591035	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q23.1	NR	rs191591035-G	0.996953	7E-14		0.1016	[0.074-0.129] unit increase	Affymetrix [16582614] (imputed)	N
1347	chr12	99904539	99904540	rs1961649	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	12q23.1	ANKS1B	rs1961649-T		3E-6		0.2234	unit increase	Illumina [5767231] (imputed)	N
1347	chr12	99961348	99961349	rs2373011	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	12q23.1	ANKS1B	rs2373011-C	0.42	2E-6		1.71	[1.00-2.42] cm increase	Affymetrix [2073674] (imputed)	N
1347	chr12	99961348	99961349	rs2373011	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	12q23.1	ANKS1B	rs2373011-C	0.42	9E-6		0.03	[0.02-0.04] unit increase	Affymetrix [2073674] (imputed)	N
1347	chr12	99976347	99976348	rs74940569	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	12q23.1	NR	rs74940569-A	0.0119381	3E-6		1.175	[1.11-1.24]	Affymetrix [7791636] (imputed)	N
1348	chr12	100088317	100088318	rs11110004	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q23.1	NR	rs11110004-?	NR	4E-7	(AA)	19.160933	[11.83-26.49] unit decrease	Affymetrix [at least 600000] (imputed)	N
1348	chr12	100088317	100088318	rs11110004	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q23.1	NR	rs11110004-?	NR	3E-7		19.543	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1349	chr12	100179214	100179215	rs11110037	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q23.1	NR	rs11110037-?	NR	2E-6		0.39557	[0.23-0.56] unit increase	NR [13958389] (imputed)	N
1349	chr12	100214821	100214822	rs7970539	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q23.1		rs7970539-?	NR	8E-9				Affymetrix [NR] (imputed)	N
1349	chr12	100215566	100215567	rs7971435	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q23.1		rs7971435-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1349	chr12	100242273	100242274	rs74659220	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Streptococcus id.1853)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs74659220-C	NR	7E-7		4.95138	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1349	chr12	100266112	100266113	rs11110077	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	12q23.1	ANKS1B	rs11110077-?	0.11	4E-7	(quetiapine)			Affymetrix [492900]	N
1350	chr12	100288106	100288107	rs11110094	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	12q23.1	NR	rs11110094-G		2E-7		0.0863	[0.05-0.123] SD units increase	NR [10700000] (imputed)	N
1350	chr12	100288106	100288107	rs11110094	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	12q23.1	NR	rs11110094-G	NR	6E-6		0.0819	[0.047-0.117] SD units increase	NR [10700000] (imputed)	N
1350	chr12	100288106	100288107	rs11110094	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	12q23.1	NR	rs11110094-G		8E-7		0.0915	[0.055-0.128] SD units increase	NR [10700000] (imputed)	N
1350	chr12	100295090	100295091	rs150896237	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.1	NR	rs150896237-C		3E-6		0.4627	[0.26-0.66] SD units increase	NR [10700000] (imputed)	N
1350	chr12	100324974	100324975	rs7132513	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	12q23.1	ANKS1B	rs7132513-C	0.6056	2E-11		1.0286481	[NR]	Illumina [12493444] (imputed)	N
1350	chr12	100349421	100349422	rs75132655	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Streptococcaceae id.1850)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs75132655-G	NR	5E-8		5.4444947	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1350	chr12	100350615	100350616	rs7313123	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Streptococcus id.1853)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs7313123-C	NR	1E-8		5.7342067	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1350	chr12	100369994	100369995	rs11110165	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	12q23.1		rs11110165-?	NR	2E-10				Affymetrix [NR] (imputed)	N
1351	chr12	100477079	100477080	rs74348118	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Streptococcus id.1853)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs74348118-C	NR	8E-9		5.7701697	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1351	chr12	100482865	100482866	rs17851246	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Streptococcaceae id.1850)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs17851246-A	NR	4E-8		5.486684	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr12	100541237	100541238	rs193153193	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.1	NR	rs193153193-G		6E-7		0.6392	[0.37-0.9] SD units decrease	NR [10700000] (imputed)	N
1352	chr12	100575772	100575773	rs7960152	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs7960152-?	NR	3E-7				Affymetrix [NR]	N
1352	chr12	100584013	100584014	rs11110281	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Streptococcus id.1853)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs11110281-T	NR	3E-9		5.9561086	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr12	100584013	100584014	rs11110281	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Streptococcaceae id.1850)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q23.1		rs11110281-T	NR	1E-8		5.6732216	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr12	100585438	100585439	rs35768	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs35768-?	NR	1E-6				Affymetrix [NR]	N
1352	chr12	100618061	100618062	rs3737	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs3737-?	NR	2E-37				Affymetrix [NR]	N
1352	chr12	100628757	100628758	rs71464210	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	12q23.1		rs71464210-A	0.78	7E-6		1.45	[1.23-1.7]	Illumina [10258281] (imputed)	N
1353	chr12	100678687	100678688	rs187795933	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.1	NR	rs187795933-G		8E-6		0.4536	[0.25-0.66] SD units decrease	NR [10700000] (imputed)	N
1353	chr12	100692349	100692350	rs144563802	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SCYL2	rs144563802-?	NR	1E-10	(male)	4.16415	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1353	chr12	100708366	100708367	rs33968174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q23.1		rs33968174-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1353	chr12	100753452	100753453	rs149492023	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC17A8	rs149492023-?	NR	3E-11	(male)	4.53582	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1353	chr12	100781887	100781888	rs12826643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q23.1		rs12826643-T	NR	4E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1353	chr12	100785271	100785272	rs184757056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q23.1		rs184757056-A	NR	4E-8		0.0902	[0.058-0.123] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1353	chr12	100789104	100789104	rs749921369	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q23.1	SLC17A8	rs749921369-?	NR	7E-11		0.018	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1354	chr12	100794592	100794593	rs183887284	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-273 sp003534295 abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs183887284-C	0.0410057	5E-8		0.261195	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
1354	chr12	100799384	100799385	rs35582280	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q23.1	NR	rs35582280-T	0.620595	9E-9		0.0116653	[0.0077-0.0156] unit decrease	NR [NR]	N
1354	chr12	100820084	100820085	rs12296850	23341777	Dong J	2013-01-17	PLoS Genet	Genome-wide association study identifies a novel susceptibility locus at 12q23.1 for lung squamous cell carcinoma in han chinese.	Squamous cell carcinoma	833 Han Chinese ancestry cases, 3,094 Han Chinese ancestry controls	2,223 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	12q23.1	SLC17A8, NR1H4, SCYL2, GAS2L3	rs12296850-A	0.744	1E-10		1.28	[1.19-1.39]	Affymetrix [570009]	N
1354	chr12	100850749	100850750	rs7955221	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q23.1		rs7955221-A	NR	7E-7		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1354	chr12	100850749	100850750	rs7955221	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q23.1	NR	rs7955221-A	NR	1E-9		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1354	chr12	100850749	100850750	rs7955221	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q23.1		rs7955221-A	NR	2E-7		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1354	chr12	100850749	100850750	rs7955221	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q23.1	NR	rs7955221-A	NR	1E-8		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1354	chr12	100873757	100873758	rs557177457	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - maxalt 5mg tablet (UKB data field 20003_1141167940)	228 European ancestry cases, 456,048 European ancestry controls	NA	12q23.1		rs557177457-A	8.955E-4	5E-9		17.95	[11.93-23.97] unit increase	NR [11842647] (imputed)	N
1354	chr12	100876631	100876632	rs3789988	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q23.1	NR	rs3789988-G	0.977443	3E-11		0.0431909	[0.03-0.056] unit increase	NR [NR]	N
1354	chr12	100890317	100890318	rs79073069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	12q23.1		rs79073069-A	0.26112	4E-8		0.030061	[0.019-0.041] unit increase	Illumina [13461863] (imputed)	N
1354	chr12	100893635	100893636	rs919213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q23.1		rs919213-T	NR	3E-8		0.0296	[0.019-0.04] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1354	chr12	100898216	100898217	rs117615171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q23.1		rs117615171-G	NR	2E-8		0.0605	[0.039-0.082] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1354	chr12	100905555	100905556	rs7970999	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q23.1	NR1H4	rs7970999-T	0.942694	5E-12		0.00768656	[0.0055-0.0099] unit increase	Affymetrix [13995440] (imputed)	N
1354	chr12	100905555	100905556	rs7970999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q23.1	NR	rs7970999-C	NR	3E-9		0.0291	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	12q23.1		rs61755050-?	NR	1E-143		0.305623	[0.28-0.33] unit decrease	NR [9800000] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	12q23.1		rs61755050-?	NR	3E-10		0.0729961	[0.049-0.097] unit decrease	NR [9800000] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	12q23.1	NR	rs61755050-C	NR	2E-14		0.1234	[0.092-0.155] unit decrease	Affymetrix [9000000] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q23.1	NR	rs61755050-C	NR	2E-62		0.2692	[0.24-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	12q23.1	NR	rs61755050-T	0.993816	3E-15		0.0617191	[0.046-0.078] unit increase	Affymetrix [16578495] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q23.1	NR	rs61755050-T	0.993934	1E-30		0.21076	[0.17-0.25] unit increase	Affymetrix [16577313] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q23.1	NR	rs61755050-T	0.993817	2E-138		0.124954	[0.11-0.14] unit increase	Affymetrix [16582909] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q23.1	NR	rs61755050-T	0.99369	1E-72		0.131126	[0.12-0.15] unit increase	Affymetrix [16585854] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q23.1	NR	rs61755050-T	0.99395	4E-72		0.124966	[0.11-0.14] unit increase	Affymetrix [16582621] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q23.1	NR	rs61755050-T	0.993817	3E-112		0.126077	[0.11-0.14] unit increase	Affymetrix [16582965] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q23.1	NR	rs61755050-T	0.99369	5E-52		0.129654	[0.11-0.15] unit increase	Affymetrix [16585866] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q23.1	NR	rs61755050-T	0.99395	4E-67		0.128665	[0.11-0.14] unit increase	Affymetrix [16582614] (imputed)	N
1355	chr12	100926307	100926308	rs61755050	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q23.1	NR	rs61755050-C	0.006299999999999972	8E-9		0.0909082	[0.06-0.122] unit increase	Affymetrix [16585745] (imputed)	N
1355	chr12	100942076	100942077	rs75061399	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	12q23.1	NR1H4	rs75061399-?	NR	5E-8		0.03396	[0.022-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1356	chr12	101100021	101100022	rs149152871	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	12q23.1	NR	rs149152871-G		5E-6		0.477	[0.28-0.68] SD units decrease	NR [10700000] (imputed)	N
1356	chr12	101138871	101138872	rs80062874	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	12q23.1	NR	rs80062874-T	0.02017	2E-6		0.4987	[0.29-0.7] unit increase	Illumina [10677593] (imputed)	N
1356	chr12	101184251	101184252	rs118152513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.1	ANO4	rs118152513-C	0.999	9E-7	(AA)	0.349	unit increase	Illumina [NR] (imputed)	N
1357	chr12	101193987	101193988	rs10778077	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	12q23.1	ANO4	rs10778077-A	NR	6E-6		4.54	NR z score increase	Affymetrix [at least 557813] (imputed)	N
1357	chr12	101218302	101218303	rs3897727	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	12q23.1	ANO4	rs3897727-T	0.252	8E-6		1.22	[1.12-1.33]	Affymetrix, Illumina [12148595] (imputed)	N
1357	chr12	101221238	101221239	rs1399439	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		12q23.1	ANO4	rs1399439-?	0.04	4E-7		0.2	unit decrease	Illumina [NR] (imputed)	N
1357	chr12	101264844	101264845	rs183825572	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.1	ANO4	rs183825572-A	1.0	9E-7	(AA)	0.379	unit increase	Illumina [NR] (imputed)	N
1357	chr12	101273182	101273183	rs12579637	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q23.1		rs12579637-G	0.771	2E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1357	chr12	101280506	101280507	rs2138050	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.1	NR	rs2138050-?	NR	4E-7				Affymetrix [NR]	N
1358	chr12	101353533	101353534	rs188024766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.1	ANO4	rs188024766-G	1.0	1E-6	(AA)	0.377	unit increase	Illumina [NR] (imputed)	N
1358	chr12	101359339	101359340	rs586891	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.1		rs586891-A	0.02	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1358	chr12	101359339	101359340	rs586891	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.1	NR	rs586891-A	0.0188	4E-8				NR [9056863] (imputed)	N
1358	chr12	101375437	101375438	rs17030834	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	NK4A144 abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.1		rs17030834-G	0.0181849	1E-8		0.0938348	[0.062-0.126] unit increase	Illumina [7980478] (imputed)	N
1358	chr12	101375645	101375646	rs609728	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	12q23.1	ANO4	rs609728-T	0.164	6E-6				Affymetrix [525356]	N
1358	chr12	101376650	101376651	rs686288	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	12q23.1	NR	rs686288-?	NR	1E-6		0.0731	[0.044-0.102] unit decrease	Illumina [~ 7800000] (imputed)	N
1358	chr12	101383957	101383958	rs66861122	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	12q23.1	ARL1, SPIC, ANO4, ANKS1B	rs66861122-G	NR	5E-6	(ParVAS)	1.82	[1.06-2.58] unit increase	Illumina [586062]	N
1358	chr12	101447640	101447641	rs7956620	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	12q23.1		rs7956620-G	NR	7E-6		0.42	[0.23-0.75]	Illumina [NR] (imputed)	N
1359	chr12	101451270	101451271	rs502697	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	12q23.1		rs502697-G	NR	7E-6	(GLM)	0.2112	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1359	chr12	101453988	101453989	rs644939	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	12q23.1		rs644939-?	NR	6E-7	(MLM)	0.2339642	[0.14-0.33] unit increase	Illumina [~ 9000000] (imputed)	N
1359	chr12	101538052	101538053	rs73389189	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q23.1	SLC5A8	rs73389189-T	NR	5E-6		2.2269096	[1.29-3.16] unit decrease	Illumina [> 6200000] (imputed)	N
1359	chr12	101548942	101548942	rs143158039	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	12q23.1	NR	rs143158039-GA		1E-6		0.0802	[0.048-0.113] SD units decrease	NR [10700000] (imputed)	N
1359	chr12	101563833	101563834	rs721633	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	12q23.1	NR	rs721633-?	NR	4E-6		0.1208	[0.069-0.173] unit increase	Illumina [at least 560000] (imputed)	N
1360	chr12	101598009	101598010	rs141751904	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	12q23.2	NR	rs141751904-T		8E-6		0.5027	[0.28-0.72] SD units decrease	NR [10700000] (imputed)	N
1360	chr12	101602102	101602103	rs7296340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.2	SLC5A8	rs7296340-A	NR	4E-8		0.0172944	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1360	chr12	101602102	101602103	rs7296340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q23.2	SLC5A8	rs7296340-A	NR	1E-8		0.0180224	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1360	chr12	101646795	101646796	rs2037053	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in medium LDL meal response (OrNLSr)	4,292 individuals	NA	12q23.2		rs2037053-G	0.039080604	4E-8		0.323833	[0.21-0.44] unit decrease	Illumina [7701709] (imputed)	N
1360	chr12	101646795	101646796	rs2037053	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides in LDL meal response (OrNLSr)	4,292 individuals	NA	12q23.2		rs2037053-G	0.039062586	4E-8		0.32504	[0.21-0.44] unit decrease	Illumina [7701709] (imputed)	N
1360	chr12	101664577	101664578	rs11110733	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	12q23.2	UTP20	rs11110733-T	NR	5E-6		0.02693	[0.015-0.039] unit decrease	Illumina [NR] (imputed)	N
1360	chr12	101687042	101687043	rs2290720	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NA	12q23.2	UTP20	rs2290720-G	0.43	3E-6		148.1	[NR] unit decrease	Illumina [546314]	N
1361	chr12	101742179	101742180	rs57083693	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	12q23.2	UTP20	rs57083693-C	0.22	4E-8		1.35	[1.23-1.47]	Illumina [4058415] (imputed)	N
1361	chr12	101753953	101753954	rs10507130	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	12q23.2	DRIM	rs10507130-?	NR	7E-6				Affymetrix [70897]	N
1361	chr12	101803805	101803806	rs118039629	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in IDL meal response (OrNLSr)	4,292 individuals	NA	12q23.2		rs118039629-A	0.023132849	5E-8		0.440365	[0.28-0.6] unit decrease	Illumina [7701709] (imputed)	N
1362	chr12	101861491	101861492	rs7979031	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	12q23.2	ARL1, SPIC	rs7979031-C	0.455423445	7E-6		1.205228	[1.110720693-1.307776555]	Illumina [10439017] (imputed)	N
1362	chr12	101867996	101867997	rs10860738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q23.2	NR	rs10860738-A	0.669612	1E-10		0.012812	[0.0089-0.0167] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1362	chr12	101870803	101870804	rs7979430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q23.2	SPIC	rs7979430-A	0.589791	5E-14		0.017005337	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1362	chr12	101871797	101871798	rs117905014	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q23.2	SPIC	rs117905014-T	0.982	5E-6		0.1979	[0.11-0.28] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q23.2		rs17041439-C	NR	3E-17		0.0346	[0.027-0.043] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q23.2		rs17041439-C	NR	3E-16		0.0364	[0.028-0.045] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q23.2		rs17041439-A	0.944	1E-8				Affymetrix [10369434] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q23.2	SPIC	rs17041439-C	0.055841	1E-17		0.041085776	[0.032-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q23.2	SPIC	rs17041439-C	0.055824	4E-23		0.04794867	[0.038-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.2	NR	rs17041439-C	0.0596103	9E-22				Affymetrix, Illumina [24649327] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q23.2	NR	rs17041439-C	0.056554	3E-21		0.037876	[0.03-0.046] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.2	NR	rs17041439-C	0.0589219	3E-22				Affymetrix, Illumina [23472807] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q23.2	NR	rs17041439-C	0.056517	2E-23		0.040938	[0.033-0.049] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q23.2		rs17041439-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1362	chr12	101873239	101873240	rs17041439	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12q23.2	SPIC	rs17041439-C	0.0558	2E-10		0.05016616	[0.035-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
1362	chr12	101873955	101873956	rs2373459	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q23.2	SPIC	rs2373459-T	0.6796	9E-12		0.0154	[0.011-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1362	chr12	101881629	101881630	rs114816829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q23.2	SPIC	rs114816829-T	0.036828	2E-9		0.03551233	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1362	chr12	101881629	101881630	rs114816829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q23.2	SPIC	rs114816829-T	0.036829	2E-9		0.035499234	[0.024-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1362	chr12	101888062	101888063	rs1012306	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q23.2	SPIC	rs1012306-C	0.438807	3E-8		0.0106663	[0.0069-0.0144] unit decrease	Affymetrix [NR] (imputed)	N
1362	chr12	101892665	101892666	rs140999406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q23.2		rs140999406-C	0.03526	3E-23		0.060572185	[0.049-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1362	chr12	101895762	101895763	rs111861820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q23.2		rs111861820-G	0.024211	5E-10		0.044866715	[0.031-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1362	chr12	101941778	101941779	rs189084037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	12q23.2		rs189084037-A	NR	1E-8		0.302	[0.2-0.41] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1362	chr12	101953062	101953063	rs117586932	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	12q23.2	NR	rs117586932-C		8E-6		0.4648	[0.26-0.67] SD units increase	NR [10700000] (imputed)	N
1362	chr12	101964851	101964852	rs2733642	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	12q23.2	NR	rs2733642-C	0.508475	2E-6		1.137	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1363	chr12	101988979	101988980	rs74550709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic pancreatitis	1,424 European ancestry cases, 476,104 European ancestry controls, 457 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	12q23.2		rs74550709-G	NR	1E-8		1.6545	[1.09-2.22] unit increase	Affymetrix, Illumina [25843262] (imputed)	N
1363	chr12	102005385	102005386	rs17031683	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.2	NR	rs17031683-?	NR	2E-8				Affymetrix [NR]	N
1363	chr12	102020445	102020446	rs10860757	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	12q23.2	MYBPC1	rs10860757-?		7E-7	(EA)			Illumina [up to 524000]	N
1363	chr12	102058889	102058890	rs117317284	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRCP	5,362 Icelandic ancestry individuals	NA	12q23.2		rs117317284-T	0.0175	2E-15		0.56257	[0.42-0.7] unit increase	Illumina [7506463] (imputed)	N
1363	chr12	102083645	102083646	rs67435264	31985465	Chen SD	2020-01-20	J Alzheimers Dis	Genome-Wide Association Study Identifies SLAMF1 Affecting the Rate of Memory Decline.	Memory decline	709 European ancestry individuals	NA	12q23.2	MYBPC1	rs67435264-?		2E-7		0.011	[NR] unit increase	Illumina [1197412]	N
1363	chr12	102086804	102086805	rs2695295	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPDL3A	5,366 Icelandic ancestry individuals	NA	12q23.2		rs2695295-A	0.4144	8E-86		0.367162	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
1363	chr12	102086804	102086805	rs2695295	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	12q23.2		rs2695295-A	0.4144	1E-68		0.325846	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
1363	chr12	102087013	102087014	rs2695294	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	NR	rs2695294-A	0.585	3E-38	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
1363	chr12	102089560	102089561	rs2559856	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q23.2	CHPT1, MYBPC1, RP11-285E23.2	rs2559856-A	0.444668	4E-12	(EA, N-acylethanolamine-hydrolyzing acid amidase)	0.3046	[0.22-0.39] unit decrease	Affymetrix [509946]	N
1363	chr12	102093458	102093459	rs2559850	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,365 Icelandic ancestry individuals	NA	12q23.2		rs2559850-G	0.4055	1E-19		0.173193	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
1363	chr12	102093458	102093459	rs2559850	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	12q23.2	CHPT1	rs2559850-A	0.598	6E-20		0.058	[0.046-0.07] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1363	chr12	102094642	102094643	rs10778143	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	12q23.2	CHPT1	rs10778143-?	NR	2E-6	(conditional on rs72728755, rs7552, rs2235370, rs16957821, rs12600562, rs12543318 and rs3845903)	0.03	[0.016-0.044] unit increase	Illumina [at least 589945] (imputed)	N
1363	chr12	102094939	102094940	rs1073083	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRCP	5,362 Icelandic ancestry individuals	NA	12q23.2		rs1073083-T	0.2127	6E-35		0.274977	[0.23-0.32] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102133390	102133391	rs10431453	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREG1	5,362 Icelandic ancestry individuals	NA	12q23.2		rs10431453-A	0.1401	5E-35		0.327995	[0.28-0.38] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102175530	102175531	rs74683465	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB4	5,366 Icelandic ancestry individuals	NA	12q23.2		rs74683465-T	0.02847	2E-15		0.445174	[0.34-0.55] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102187940	102187941	rs10492086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAP	5,364 Icelandic ancestry individuals	NA	12q23.2		rs10492086-G	0.1963	4E-17		0.196473	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102187940	102187941	rs10492086	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREG1	5,362 Icelandic ancestry individuals	NA	12q23.2		rs10492086-G	0.1963	1E-74		0.417268	[0.37-0.46] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102192802	102192803	rs11111026	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs11111026-T	0.182	2E-13	(Leukocyte immunoglobulin-like receptor subfamily B member 4, LILRB4.6453.70.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102212171	102212172	rs11347749	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs11347749-C	0.355	6E-29	(Cathepsin F, CTSF.9212.22.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102212171	102212172	rs11347749	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs11347749-C	0.355	4E-45	(Protein CREG1, CREG1.9357.4.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPDL3A	5,366 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	3E-121		0.474718	[0.43-0.51] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPD1	5,368 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	3E-91		0.404284	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAAA	5,364 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	5E-99		0.42707	[0.39-0.47] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGAT2	5,360 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	2E-15		0.16632	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LARGE1	5,354 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	2E-18		0.178875	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IDS	5,365 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	1E-18		0.183766	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GXYLT1	5,364 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	2E-53		0.317551	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GGH	5,361 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	4E-24		0.212315	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FJX1	5,364 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	1E-12		0.145742	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSZ	5,363 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	3E-53		0.307292	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSO	5,361 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	2E-12		0.143516	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSF	5,364 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	4E-43		0.288136	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSC	5,363 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	2E-19		0.1879	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102216672	102216673	rs4764822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSA	5,364 Icelandic ancestry individuals	NA	12q23.2		rs4764822-T	0.2809	3E-31		0.240945	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102217719	102217720	rs10860794	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	12q23.2		rs10860794-A	0.3	8E-69		0.1592	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1364	chr12	102217719	102217720	rs10860794	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10860794-A	0.294	2E-42	(Cathepsin Z, CTSZ.4971.1.1)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102217719	102217720	rs10860794	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10860794-A	0.294	2E-16	(Lysosomal Pro-X carboxypeptidase, PRCP.5722.78.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102217719	102217720	rs10860794	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	12q23.2	NR	rs10860794-?	NR	2E-9	(CATZ)	0.1	[0.061-0.139] unit decrease	Illumina [4020654] (imputed)	N
1364	chr12	102217719	102217720	rs10860794	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q23.2	GNPTAB, RNA5SP369	rs10860794-A	0.3114343	2E-11	(EA, Lysosomal protective protein)	0.3199	[0.23-0.41] unit decrease	Affymetrix [509946]	N
1364	chr12	102217719	102217720	rs10860794	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	12q23.2	GNPTAB, RNA5SP369	rs10860794-A	0.3114343	1E-13	(EA, Cathepsin Z)	0.3504	[0.26-0.44] unit decrease	Affymetrix [509946]	N
1364	chr12	102218898	102218899	rs10745925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10745925-C	0.294	6E-31	(N-acylethanolamine-hydrolyzing acid amidase, NAAA.3173.49.2)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102218898	102218899	rs10745925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10745925-C	0.294	3E-40	(Glucoside xylosyltransferase 1, GXYLT1.8229.1.3)	0.35	[0.29-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102218898	102218899	rs10745925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10745925-C	0.294	2E-42	(Cathepsin Z, CTSZ.4971.1.1)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102218898	102218899	rs10745925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10745925-C	0.294	1E-51	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102218898	102218899	rs10745925	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs10745925-C	0.294	1E-19	(Arylsulfatase K, ARSK.8269.327.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102219566	102219567	rs77713877	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	NR	rs77713877-C	0.012	2E-31	(Protein CREG1, CREG1.9357.4.3)	1.34	[1.12-1.56] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102220782	102220783	rs7964859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs7964859-G	0.294	9E-15	(Gamma-glutamyl hydrolase, GGH.9370.69.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102220782	102220783	rs7964859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs7964859-G	0.294	7E-19	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102220782	102220783	rs7964859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs7964859-G	0.294	2E-21	(Lysosomal protective protein, CTSA.3179.51.2)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102220782	102220783	rs7964859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.2	GNPTAB	rs7964859-G	0.294	1E-51	(Acid sphingomyelinase-like phosphodiesterase 3a, SMPDL3A.14086.11.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1364	chr12	102225750	102225751	rs10778152	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IDUA	5,366 Icelandic ancestry individuals	NA	12q23.2		rs10778152-G	0.2813	5E-29		0.236459	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102225750	102225751	rs10778152	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSD	5,357 Icelandic ancestry individuals	NA	12q23.2		rs10778152-G	0.2813	5E-15		0.157813	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1364	chr12	102225750	102225751	rs10778152	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPQ	5,362 Icelandic ancestry individuals	NA	12q23.2		rs10778152-G	0.2813	1E-36		0.261881	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
1365	chr12	102265605	102265606	rs10860802	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	12q23.2	GNPTAB, DRAM1	rs10860802-G	0.17	3E-6		0.199	[0.12-0.28] unit decrease	Illumina [6379332] (imputed)	N
1365	chr12	102277781	102277782	rs6539014	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	12q23.2	NR	rs6539014-?	NR	8E-6		0.58	[0.54-0.63]	Illumina [539000] (imputed)	N
1365	chr12	102300976	102300977	rs73178508	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	12q23.2	NR	rs73178508-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1365	chr12	102303025	102303026	rs6539018	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs6539018-?	NR	8E-9	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102303025	102303026	rs6539018	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs6539018-?	NR	4E-9	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102309022	102309023	rs35920088	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	12q23.2	DRAM1	rs35920088-?	NR	3E-6				Illumina [5729117] (imputed)	N
1365	chr12	102321311	102321312	rs10778159	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10778159-?	NR	9E-12	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102321311	102321312	rs10778159	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10778159-?	NR	2E-10	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102321311	102321312	rs10778159	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10778159-?	NR	1E-10	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102321934	102321935	rs4622329	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q23.2	DRAM1	rs4622329-A	0.561	4E-15		1.119	[1.09-1.15]	Illumina [11270530] (imputed)	N
1365	chr12	102321934	102321935	rs4622329	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4622329-?	NR	7E-11	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102321934	102321935	rs4622329	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4622329-?	NR	3E-10	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102321934	102321935	rs4622329	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4622329-?	NR	1E-10	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102321934	102321935	rs4622329	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12q23.2	DRAM1	rs4622329-A	0.56	9E-12		1.1905		Illumina [2100739] (imputed)	N
1365	chr12	102322902	102322903	rs4764850	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764850-?	NR	3E-13	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102322902	102322903	rs4764850	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764850-?	NR	1E-12	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102322902	102322903	rs4764850	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764850-?	NR	1E-11	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102324096	102324097	rs7965453	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs7965453-?	NR	4E-9	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102326460	102326461	rs11111090	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q23.2	DPP4	rs11111090-?		9E-30				NR [7428630] (imputed)	N
1365	chr12	102326460	102326461	rs11111090	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q23.2	NR	rs11111090-?		5E-52				NR [7428630] (imputed)	N
1365	chr12	102326460	102326461	rs11111090	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q23.2	ERC2	rs11111090-?		9E-30				NR [7428630] (imputed)	N
1365	chr12	102326460	102326461	rs11111090	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q23.2	CHPT1, SYCP3, GNPTAB, DRAM1, CCDC53, NUP37, PARPBP, PMCH, IGF1	rs11111090-?		3E-37				NR [7428630] (imputed)	N
1365	chr12	102326460	102326461	rs11111090	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	12q23.2	NR	rs11111090-A	0.5218	7E-27		10.738	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1365	chr12	102328805	102328806	rs11111094	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11111094-?	NR	8E-25	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102328805	102328806	rs11111094	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11111094-?	NR	6E-28	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102328805	102328806	rs11111094	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11111094-?	NR	4E-31	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102333721	102333722	rs4764683	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764683-?	NR	4E-12	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102333721	102333722	rs4764683	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764683-?	NR	2E-11	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102333721	102333722	rs4764683	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs4764683-?	NR	1E-12	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102334689	102334690	rs10860823	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10860823-?	NR	4E-13	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102334689	102334690	rs10860823	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10860823-?	NR	2E-8	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102334689	102334690	rs10860823	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10860823-?	NR	2E-11	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102337900	102337901	rs11833310	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11833310-?	NR	5E-9	(left cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102337900	102337901	rs11833310	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11833310-?	NR	3E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1365	chr12	102338234	102338235	rs7964241	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs7964241-?	NR	1E-8	(Brain stem)			NR [9227495] (imputed)	N
1365	chr12	102338234	102338235	rs7964241	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	12q23.2	DRAM1	rs7964241-G	0.21	2E-8		2.49	[1.81-3.42]	Affymetrix [508192]	N
1365	chr12	102340876	102340877	rs75127467	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q23.2	DRAM1	rs75127467-A	0.7023	2E-7		0.0381	[0.024-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1365	chr12	102342102	102342103	rs4337094	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.2	NR	rs4337094-?	NR	4E-7				Affymetrix [NR]	N
1365	chr12	102347800	102347801	rs12371834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs12371834-?	NR	3E-57				NR [~ 8900000] (imputed)	N
1365	chr12	102352882	102352883	rs4597120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs4597120-T	NR	5E-10		0.0239	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1366	chr12	102367380	102367381	rs7132083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	DRAM1	rs7132083-G	NR	5E-9		0.0164486	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1366	chr12	102373787	102373788	rs7971536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	DRAM1	rs7971536-A	0.4945	1E-24		0.0194	[0.016-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1366	chr12	102373787	102373788	rs7971536	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q23.2	CCDC53/GNPTAB	rs7971536-A	0.46	8E-14		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1366	chr12	102407431	102407432	rs7971939	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs7971939-?	NR	5E-17	(left cerebellum white matter)			NR [9227495] (imputed)	N
1366	chr12	102407431	102407432	rs7971939	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs7971939-?	NR	4E-18	(right cerebellum white matter)			NR [9227495] (imputed)	N
1366	chr12	102407745	102407746	rs17032220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q23.2		rs17032220-C	NR	3E-16		0.0208	[0.016-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1366	chr12	102412703	102412703	rs150033364	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	WASHC3	rs150033364-G	0.8029	1E-25		0.0238	[0.019-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
1366	chr12	102417637	102417638	rs79076266	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	12q23.2		rs79076266-?	NR	6E-10				NR [9705931] (imputed)	N
1366	chr12	102422358	102422359	rs66500550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	CCDC53	rs66500550-G	NR	4E-11		0.0459662	[0.032-0.06] unit decrease	Affymetrix [321016] (imputed)	N
1366	chr12	102422358	102422359	rs66500550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	CCDC53	rs66500550-G	NR	2E-8		0.0425307	[0.028-0.057] unit decrease	Affymetrix [323123] (imputed)	N
1366	chr12	102422358	102422359	rs66500550	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	WASHC3	rs66500550-C	0.9579	2E-17		0.0393	[0.03-0.048] unit increase	Affymetrix [18391927] (imputed)	N
1366	chr12	102426095	102426096	rs142587718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs142587718-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1366	chr12	102431658	102431659	rs78524772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q23.2		rs78524772-T	NR	3E-104		0.0443	[0.04-0.048] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1366	chr12	102431758	102431759	rs11111142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q23.2		rs11111142-A	0.304197	3E-12		0.0204967	[0.015-0.026] unit decrease	Illumina [13479924] (imputed)	N
1366	chr12	102442427	102442428	rs35872193	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs35872193-?	NR	7E-12	(right cerebellum exterior)			NR [9227495] (imputed)	N
1366	chr12	102442427	102442428	rs35872193	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs35872193-?	NR	2E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1366	chr12	102446674	102446675	rs77121786	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q23.2	NR	rs77121786-G	NR	1E-8		1.048	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1366	chr12	102452263	102452264	rs11111146	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q23.2	NR	rs11111146-A	NR	5E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1366	chr12	102455728	102455729	rs3751129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q23.2	NR	rs3751129-A	0.21632200000000001	2E-13		0.0107555	[0.0078-0.0137] unit increase	Affymetrix [16585854] (imputed)	N
1366	chr12	102455728	102455729	rs3751129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q23.2	NR	rs3751129-A	0.21632200000000001	5E-9		0.00998266	[0.0066-0.0134] unit increase	Affymetrix [16585866] (imputed)	N
1366	chr12	102456251	102456252	rs118008365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs118008365-G	NR	2E-58		0.0795	[0.07-0.089] unit increase	Affymetrix [9000000] (imputed)	N
1366	chr12	102463139	102463140	rs17437668	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q23.2	NUP37	rs17437668-T	0.201	9E-14		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1366	chr12	102471003	102471004	rs116868345	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.2		rs116868345-C	0.993783	4E-13		0.196643	[0.14-0.25] unit decrease	NR [11722792] (imputed)	N
1366	chr12	102478248	102478248	rs10673692	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10673692-?	NR	4E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1366	chr12	102492589	102492590	rs10745936	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10745936-?	NR	4E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
1366	chr12	102492589	102492590	rs10745936	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs10745936-?	NR	3E-9	(left cerebellum white matter)			NR [9227495] (imputed)	N
1366	chr12	102493233	102493235	rs3841628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q23.2		rs3841628-A	NR	8E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1367	chr12	102502758	102502759	rs4611262	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	12q23.2	NUP37	rs4611262-?	NA	2E-15		2.37	[1.78-2.96] unit increase	Affymetrix [5541230] (imputed)	N
1367	chr12	102506043	102506044	rs2271266	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	NR	rs2271266-?	NR	2E-7		0.05482039	[0.034-0.075] unit decrease	Illumina [34656550] (imputed)	N
1367	chr12	102506043	102506044	rs2271266	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q23.2	NUP37	rs2271266-T	0.67	4E-46		0.077	[0.063-0.091] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1367	chr12	102513530	102513531	rs2292303	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	NR	rs2292303-?	NR	5E-7		0.0533153	[0.033-0.074] unit decrease	Illumina [34656550] (imputed)	N
1367	chr12	102513530	102513531	rs2292303	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	12q23.2	NUP37, C12orf48, PMCH	rs2292303-C	0.30	8E-6		0.51	[NR] cm decrease	Affymetrix [334546]	N
1367	chr12	102514632	102514633	rs79579070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs79579070-A	NR	3E-27		0.0808	[0.066-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1367	chr12	102532009	102532010	rs142368105	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q23.2	PARPBP	rs142368105-G	NR	1E-6		0.136517	[0.081-0.192] unit decrease	Illumina [13520550] (imputed)	N
1367	chr12	102540753	102540754	rs368746845	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q23.2		rs368746845-G	0.82	6E-11		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1367	chr12	102551714	102551715	rs113701417	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.2	PARPBP	rs113701417-?	NR	3E-97		0.0643683	[0.058-0.07] unit decrease	Illumina [27896057] (imputed)	N
1367	chr12	102568100	102568101	rs17438571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q23.2	PARPBP	rs17438571-G	NR	7E-9		0.0225499	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1367	chr12	102568100	102568101	rs17438571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q23.2	PARPBP	rs17438571-G	NR	2E-8		0.0217413	[0.014-0.029] unit decrease	Affymetrix [127266] (imputed)	N
1367	chr12	102571932	102571933	rs76157805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs76157805-?	NR	2E-42				NR [~ 8900000] (imputed)	N
1367	chr12	102579518	102579519	rs11111197	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	12q23.2	PMCH	rs11111197-T	0.2003	8E-14		0.018130047	[0.013-0.023] unit increase	Illumina [9339358] (imputed)	N
1367	chr12	102587533	102587534	rs17032311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q23.2		rs17032311-G	0.310006	3E-84		0.0420717	[0.038-0.046] unit decrease	Illumina [13479295] (imputed)	N
1367	chr12	102602321	102602322	rs76770509	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine without aura	27 Taiwanese ancestry cases, 142 Taiwanese ancestry controls	NA	12q23.2	intergenic	rs76770509-G	0.003521	2E-8		42.15	NR	Affymetrix [710525]	N
1367	chr12	102602953	102602954	rs59660079	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	12q23.2	PMCH	rs59660079-T	0.2175	2E-8		0.016117444	[0.01-0.022] unit increase	Affymetrix [11515109] (imputed)	N
1367	chr12	102616649	102616650	rs7134488	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12q23.2	NR	rs7134488-A	0.2255	2E-7		0.0112	[0.0071-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1368	chr12	102629504	102629505	rs78502942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs78502942-A	NR	6E-31		0.0705	[0.059-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1368	chr12	102630678	102630679	rs7313075	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	NR	rs7313075-?	NR	2E-7		0.03375145	[0.021-0.047] unit decrease	Illumina [34656550] (imputed)	N
1368	chr12	102630678	102630679	rs7313075	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	12q23.2	IGF1	rs7313075-A	0.32	4E-47		0.074	[0.062-0.086] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1368	chr12	102661359	102661360	rs74900775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs74900775-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1368	chr12	102676913	102676914	rs17032384	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.2	NR	rs17032384-?	NR	7E-7				Affymetrix [NR]	N
1368	chr12	102684914	102684915	rs146354672	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	12q23.2	PMCH	rs146354672-G	NR	9E-6		0.377	[0.21-0.54] unit increase	Illumina [NR] (imputed)	N
1368	chr12	102710683	102710684	rs1113483	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1113483-T	0.478024	9E-9		0.0513447	[0.033-0.069] decrease	Affymetrix [11014269] (imputed)	N
1368	chr12	102716171	102716172	rs78597439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs78597439-T	NR	3E-15		0.068	[0.051-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1368	chr12	102726337	102726338	rs1520223	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	NR	rs1520223-?	NR	2E-6		0.05211746	[0.031-0.074] unit decrease	Illumina [34656550] (imputed)	N
1368	chr12	102726337	102726338	rs1520223	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	12q23.2	IGF1	rs1520223-C	0.26	9E-7		0.56	[NR] cm decrease	Affymetrix [334546]	N
1368	chr12	102731603	102731604	rs76531168	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q23.2		rs76531168-G	0.38	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1368	chr12	102731603	102731604	rs76531168	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q23.2	NR	rs76531168-G	0.3772	4E-8				NR [9056863] (imputed)	N
1368	chr12	102742242	102742243	rs35638230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q23.2		rs35638230-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1368	chr12	102754515	102754516	rs56154034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	IGF1	rs56154034-G	NR	4E-8		0.0719504	[0.046-0.098] unit increase	Affymetrix [321016] (imputed)	N
1369	chr12	102764730	102764731	rs192963808	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	12q23.2	NR	rs192963808-A	NR	3E-8		5.53	z score increase	NR [9015039] (imputed)	N
1369	chr12	102772744	102772745	rs1533688	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q23.2	IGF1	rs1533688-C	0.773789	3E-9		0.022157	[0.015-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1369	chr12	102773616	102773617	rs17032480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	IGF1	rs17032480-C	NR	2E-9		0.0713148	[0.048-0.095] unit decrease	Affymetrix [321016] (imputed)	N
1369	chr12	102778035	102778036	rs117692887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs117692887-A	NR	1E-9		0.0569	[0.038-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1369	chr12	102779477	102779478	rs7484309	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Height	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q23.2	LINC02456	rs7484309-C	0.493	3E-16	(female)	0.29	[0.21-0.37] unit increase	NR [8056211] (imputed)	N
1369	chr12	102793568	102793569	rs6214	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.2	IGF1	rs6214-?	NR	3E-14		0.025079032	[0.019-0.032] unit decrease	Illumina [27896057] (imputed)	N
1369	chr12	102799597	102799598	rs5742692	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	NR	rs5742692-?	NR	5E-6		0.03870092	[0.022-0.055] unit decrease	Illumina [34656550] (imputed)	N
1369	chr12	102799597	102799598	rs5742692	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	12q23.2	IGF1	rs5742692-G	0.27	4E-8		0.07	[0.05-0.09] cm decrease	Illumina [420885]	N
1369	chr12	102803892	102803893	rs9308315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q23.2		rs9308315-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1369	chr12	102824920	102824921	rs972936	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q23.2	IGF1	rs972936-T	0.2625	2E-23		0.0286	[0.023-0.034] unit increase	Affymetrix [19819130] (imputed)	N
1369	chr12	102824920	102824921	rs972936	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q23.2	IGF1	rs972936-T	0.2625	9E-9		0.0154	[0.01-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1369	chr12	102824920	102824921	rs972936	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q23.2	IGF1	rs972936-T	0.2625	7E-10		0.0164	[0.011-0.022] unit increase	Affymetrix [19819130] (imputed)	N
1369	chr12	102827440	102827441	rs11111272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q23.2	IGF1	rs11111272-G	NR	1E-8		0.019768	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1369	chr12	102827440	102827441	rs11111272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q23.2	IGF1	rs11111272-G	NR	2E-8		0.0193205	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1369	chr12	102834867	102834868	rs5742657	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	12q23.2	IGF1	rs5742657-?	NR	4E-8		0.44	[0.28-0.6] unit decrease	Affymetrix [5682219] (imputed)	N
1369	chr12	102835858	102835859	rs5742653	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q23.2		rs5742653-C	NR	2E-11	(East Asian)			Affymetrix [NR] (imputed)	N
1369	chr12	102837862	102837863	rs5742643	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q23.2	IGF1	rs5742643-A	0.2504	2E-15		0.2236	[0.17-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1369	chr12	102838127	102838128	rs11111274	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q23.2	NR	rs11111274-G	0.262903	3E-25		0.00950591	[0.0077-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
1369	chr12	102838127	102838128	rs11111274	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q23.2	NR	rs11111274-G	0.262632	1E-10		0.00783764	[0.0053-0.0104] unit increase	Affymetrix [16582621] (imputed)	N
1369	chr12	102838127	102838128	rs11111274	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q23.2	NR	rs11111274-G	0.262903	5E-18		0.00870403	[0.0066-0.0108] unit increase	Affymetrix [16582965] (imputed)	N
1369	chr12	102838127	102838128	rs11111274	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q23.2	NR	rs11111274-G	0.262632	5E-8		0.00731072	[0.0046-0.01] unit increase	Affymetrix [16582614] (imputed)	N
1369	chr12	102838514	102838515	rs7136446	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q23.2	NUP37, PARPBP, IGF1	rs7136446-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1369	chr12	102841825	102841826	rs10860867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	IGF1	rs10860867-T	NR	2E-9		0.0759399	[0.051-0.101] unit decrease	Affymetrix [323123] (imputed)	N
1369	chr12	102846503	102846504	rs12313279	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	12q23.2	NR	rs12313279-A	0.2962	3E-9		5.945	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1369	chr12	102850222	102850223	rs9989002	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs9989002-?	NR	2E-11	(right cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102850222	102850223	rs9989002	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs9989002-?	NR	1E-11	(left cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102856473	102856474	rs5742632	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	12q23.2		rs5742632-A	NR	4E-22		0.053	[0.042-0.064] unit decrease	Affymetrix [6193476] (imputed)	N
1369	chr12	102856646	102856647	rs2195240	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs2195240-?	NR	3E-9	(Brain stem)			NR [9227495] (imputed)	N
1369	chr12	102858815	102858816	rs7956547	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs7956547-?	NR	2E-12	(right cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102864424	102864425	rs1019731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs1019731-A	NR	5E-12		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1369	chr12	102866637	102866638	rs17796225	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs17796225-?	NR	7E-12	(left cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102869098	102869099	rs5742621	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	12q23.2	NR	rs5742621-?	NR	7E-6		1.2171	[0.66-1.77] unit decrease	Illumina [at least 560000] (imputed)	N
1369	chr12	102875568	102875569	rs35767	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	12q23.2	IGF1	rs35767-G	0.803768	6E-6		0.023071	[0.013-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1369	chr12	102875568	102875569	rs35767	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	12q23.2	IGF1	rs35767-G	0.803768	1E-6		0.016271	[0.0097-0.0229] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1369	chr12	102875568	102875569	rs35767	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of insulin resistance	37,037 European ancestry individuals	62,264 European ancestry individuals	12q23.2	IGF1	rs35767-G	0.85	2E-9		0.013	[0.0012-0.0248] unit increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1369	chr12	102875568	102875569	rs35767	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood insulin	38,238 European ancestry individuals	62,264 European ancestry individuals	12q23.2	IGF1	rs35767-G	0.85	3E-8		0.01	[-0.00176-0.02176] pmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1369	chr12	102885113	102885114	rs142665966	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs142665966-?	NR	7E-14	(left cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102885113	102885114	rs142665966	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs142665966-?	NR	6E-15	(right cerebellum white matter)			NR [9227495] (imputed)	N
1369	chr12	102885113	102885114	rs142665966	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs142665966-?	NR	2E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1369	chr12	102886140	102886141	rs150634721	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	12q23.2	IGF1	rs150634721-C	NR	4E-7		26.0032	[16.13-35.88] unit increase	Illumina [6097251] (imputed)	N
1370	chr12	102898445	102898446	rs860598	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12q23.2	IGF1	rs860598-A	0.8197	7E-12		0.0177	[0.013-0.023] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1370	chr12	102900184	102900185	rs703538	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	12q23.2	IGF1	rs703538-?	NR	1E-7				NR [3144808] (imputed)	N
1370	chr12	102912557	102912558	rs35747	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	12q23.2	IGF1	rs35747-A	0.8286	1E-9		0.001135	[-0.00047-0.00274] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1370	chr12	102912557	102912558	rs35747	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	12q23.2	IGF1	rs35747-A	0.815	9E-9		0.0233	[0.015-0.031] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1370	chr12	102913945	102913946	rs17797222	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs17797222-?	NR	2E-13	(left cerebellum white matter)			NR [9227495] (imputed)	N
1370	chr12	102913945	102913946	rs17797222	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs17797222-?	NR	1E-14	(right cerebellum white matter)			NR [9227495] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q23.2		rs11111293-C	0.19	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	12q23.2	IGF1	rs11111293-?		5E-10	(Global)			Affymetrix, Illumina [NR] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs11111293-?	NR	6E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	12q23.2	NR	rs11111293-T	0.7805	3E-7		5.114	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	12q23.2	NR	rs11111293-T	0.7798	3E-6		4.651	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1370	chr12	102921295	102921296	rs11111293	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Amygdala volume	34,431 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	12q23.2	NR	rs11111293-T	0.7833	3E-10		6.323	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1370	chr12	102921870	102921871	rs77991917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs77991917-A	NR	2E-16		0.0732	[0.056-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1370	chr12	102922985	102922986	rs2195243	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.2		rs2195243-C	0.19	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
1370	chr12	102922985	102922986	rs2195243	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	12q23.2	NR	rs2195243-C	NR	1E-7		5.26	NR z score decrease	NR [9186920] (imputed)	N
1370	chr12	102924963	102924964	rs80076418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q23.2	RP11-210L7.1	rs80076418-A	NR	4E-8		0.0219887	[0.014-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1370	chr12	102942999	102943000	rs703545	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	12q23.2		rs703545-A	NR	2E-15		0.0437	[0.033-0.054] unit decrease	Affymetrix [6193476] (imputed)	N
1370	chr12	102942999	102943000	rs703545	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.2	NR	rs703545-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1370	chr12	102946219	102946220	rs78929770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs78929770-A	NR	1E-32		0.0506	[0.042-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1370	chr12	102946453	102946454	rs855286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs855286-?	NR	5E-22				NR [~ 8900000] (imputed)	N
1370	chr12	102949646	102949647	rs35762	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	intergenic	rs35762-T	0.1525	4E-17		0.0218	[0.017-0.027] unit increase	Affymetrix [18391927] (imputed)	N
1370	chr12	102955278	102955279	rs59314616	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	12q23.2	IGF1	rs59314616-?	NR	4E-10		0.045	[0.031-0.059] unit decrease	Illumina [34656550] (imputed)	N
1370	chr12	102962506	102962507	rs1457596	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs1457596-A	NR	6E-35		0.0483	[0.041-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1370	chr12	102962944	102962945	rs140572498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q23.2		rs140572498-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1370	chr12	102965328	102965329	rs7964748	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	12q23.2	IGF1	rs7964748-G	0.28	3E-6	(AA-glucose response)	4.06	[2.37-5.75] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1370	chr12	102971618	102971619	rs10860882	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	12q23.2	IGF1	rs10860882-C	0.378	2E-8		0.084	[0.055-0.113] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1370	chr12	102973216	102973217	rs1379496	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		12q23.2	NR	rs1379496-A	NR	6E-6	(conditioned on rs1426654)	0.239513	[0.14-0.34] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1370	chr12	102982209	102982210	rs4764899	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q23.2	IGF1, LINC00485	rs4764899-T	0.3657	4E-9		0.085	[0.057-0.113] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1370	chr12	102983913	102983914	rs11111315	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q23.2	IGF1, LINC00485	rs11111315-G	0.3973	3E-8		0.079	[0.051-0.107] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1370	chr12	102985437	102985438	rs77705555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	RP11-210L7.1	rs77705555-T	NR	5E-8		0.0322107	[0.021-0.044] unit increase	Affymetrix [323123] (imputed)	N
1370	chr12	102989155	102989156	rs79812076	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	12q23.2	IGF1	rs79812076-?		2E-6		6.012	[4.12-7.91] unit increase	Illumina [~ 4900000] (imputed)	N
1370	chr12	102994877	102994878	rs7964361	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	12q23.2	NR	rs7964361-A	0.085	2E-8		0.03859654	[0.025-0.052] unit increase	NR [1977400] (imputed)	N
1370	chr12	102994877	102994878	rs7964361	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	12q23.2	IGF1	rs7964361-A	0.08	1E-8		0.0378	[0.025-0.051] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1370	chr12	102994982	102994983	rs7979284	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.2	IGF1, LINC00485	rs7979284-?	NR	1E-8		0.024951765	[0.016-0.034] unit increase	Illumina [27896057] (imputed)	N
1370	chr12	103011893	103011894	rs703556	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	12q23.2	IGF1	rs703556-A	0.98	4E-10		0.41	[0.25-0.57] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1370	chr12	103022396	103022397	rs7295435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	RP11-210L7.1	rs7295435-A	NR	4E-8		0.0174829	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1371	chr12	103038155	103038156	rs703588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs703588-C	NR	2E-10		0.0515	[0.036-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1371	chr12	103042298	103042299	rs2643672	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.2	NR	rs2643672-?	NR	9E-11		0.14326	[0.1-0.187] unit decrease	Affymetrix [7794483] (imputed)	N
1371	chr12	103042298	103042299	rs2643672	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.2	NR	rs2643672-?	NR	7E-6	(female)	0.10854	[0.061-0.156] unit decrease	Affymetrix [7794483] (imputed)	N
1371	chr12	103042298	103042299	rs2643672	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.2	NR	rs2643672-?	NR	2E-6	(male)	0.16582	[0.097-0.234] unit decrease	Affymetrix [7794483] (imputed)	N
1371	chr12	103046822	103046823	rs7312112	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.2	IGF1, LINC00485	rs7312112-?	NR	3E-14		0.021749742	[0.016-0.027] unit decrease	Illumina [27896057] (imputed)	N
1371	chr12	103048183	103048184	rs2133292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	RP11-210L7.1	rs2133292-T	NR	7E-9		0.0168778	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1371	chr12	103050658	103050659	rs833741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	RP11-210L7.1	rs833741-G	NR	6E-9		0.0166009	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1371	chr12	103059019	103059020	rs11111333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	LINC00485	rs11111333-G	NR	3E-12		0.0220944	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
1371	chr12	103064246	103064247	rs703593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.2	LINC00485	rs703593-G	NR	2E-8		0.0171322	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1371	chr12	103064246	103064247	rs703593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs703593-?	NR	6E-48				NR [~ 8900000] (imputed)	N
1371	chr12	103071760	103071761	rs10860900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs10860900-C	NR	3E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1371	chr12	103077251	103077252	rs6539044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	LINC00485	rs6539044-A	NR	4E-8		0.0182463	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1371	chr12	103078059	103078060	rs4764907	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.2	LINC00485	rs4764907-T	NR	5E-11		0.0184312	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1371	chr12	103081191	103081192	rs2647873	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	intergenic	rs2647873-A	0.518	3E-23		0.0184	[0.015-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1371	chr12	103081191	103081192	rs2647873	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q23.2	LINC00485, IGF1	rs2647873-A	0.518767	1E-12		0.021588	[0.016-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1371	chr12	103081191	103081192	rs2647873	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q23.2	LINC00485, IGF1	rs2647873-A	0.519598	3E-12		0.01806	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1371	chr12	103081978	103081979	rs12425517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q23.2	LINC00485	rs12425517-A	NR	3E-8		0.0201023	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
1371	chr12	103122914	103122915	rs17033112	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.2	IGF1, LINC00485	rs17033112-?	NR	4E-23		0.048409093	[0.039-0.058] unit decrease	Illumina [27896057] (imputed)	N
1371	chr12	103123338	103123339	rs17033114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	12q23.2		rs17033114-C	NR	7E-20		0.1322	[0.1-0.16] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1371	chr12	103123338	103123339	rs17033114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	12q23.2		rs17033114-C	0.275900993	1E-22		0.15810707	[0.13-0.19] unit decrease	Illumina [13401454] (imputed)	N
1371	chr12	103123338	103123339	rs17033114	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q23.2	LINC00485, IGF1	rs17033114-T	0.933851	1E-15		0.053973	[0.041-0.067] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1371	chr12	103125689	103125690	rs2172873	21460842	Cha PC	2011-04-03	Nat Genet	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	12q23.2	NR	rs2172873-A	0.22	2E-6		1.18	[1.04-1.34]	Illumina [457044]	N
1371	chr12	103132739	103132740	rs56006730	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	12q23.2	intergenic	rs56006730-A	0.104072996561756	1E-19		0.01566056	unit decrease	NR [9276018] (imputed)	N
1371	chr12	103133727	103133728	rs117441946	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	intergenic	rs117441946-A	0.0488	9E-10		0.0267	[0.018-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
1371	chr12	103147927	103147927	rs142187070	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.2	intergenic	rs142187070-G	0.8597	3E-31		0.032	[0.027-0.037] unit increase	Affymetrix [18391927] (imputed)	N
1372	chr12	103153735	103153736	rs1014675	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	12q23.2	LINC00485	rs1014675-?	NA	5E-6		0.781	[0.44-1.12] unit increase	Illumina [6690240] (imputed)	N
1372	chr12	103159650	103159651	rs190043735	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	12q23.2	NR	rs190043735-G		3E-6		0.641	[0.37-0.92] SD units decrease	NR [10700000] (imputed)	N
1372	chr12	103175169	103175170	rs78812993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs78812993-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1372	chr12	103179935	103179936	rs1722400	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	12q23.2	intergenic	rs1722400-C	NR	9E-6				Illumina [up to 11995908] (imputed)	N
1372	chr12	103208418	103208419	rs148113416	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.2	NR	rs148113416-G		2E-6		0.4999	[0.29-0.71] SD units decrease	NR [10700000] (imputed)	N
1372	chr12	103234270	103234271	rs5030858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.2		rs5030858-G	0.9984	4E-198		1.5524	[1.45-1.65] unit decrease	NR [11722792] (imputed)	N
1372	chr12	103242395	103242396	rs1718309	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q23.2	PAH	rs1718309-G	0.6	3E-15	(Phenylalanine)	0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1372	chr12	103244012	103244013	rs869916	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phenylalanine	4,734 individuals	NA	12q23.2		rs869916-T	0.61158601	4E-14		0.160177	[0.12-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1372	chr12	103245801	103245802	rs1722383	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phenylalanine	4,348 individuals	NA	12q23.2		rs1722383-G	0.613198758	2E-17		0.187739	[0.14-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
1372	chr12	103245801	103245802	rs1722383	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	12q23.2	PAH	rs1722383-?	NR	7E-12	(Phe)	0.054930564	NR unit increase	Illumina [609262]	N
1372	chr12	103245801	103245802	rs1722383	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	12q23.2	PAH	rs1722383-?	NR	2E-6	(Phe)	0.05916799	NR unit increase	Illumina [609262]	N
1372	chr12	103251674	103251675	rs12297049	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	12q23.2	PAH	rs12297049-T	0.5875	1E-10	(Phenylalanine)	0.0202	[0.014-0.026] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
1372	chr12	103257875	103257876	rs1498694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.2		rs1498694-A	0.389172	9E-146		0.108993	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1372	chr12	103257875	103257876	rs1498694	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q23.2	PAH	rs1498694-A	0.4	7E-11	(phenylalanine)	0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1372	chr12	103263580	103263581	rs10778203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q23.2		rs10778203-C	0.775937	3E-8		0.0273397	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1372	chr12	103265419	103265420	rs147502517	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	12q23.2	PAH	rs147502517-T	0.012	4E-7		7.191	[3.354-15.42]	Illumina [7585874] (imputed)	N
1372	chr12	103265419	103265420	rs147502517	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	12q23.2	NR	rs147502517-?	NR	2E-6		0.2088	[0.12-0.29] unit increase	Illumina [~ 7800000] (imputed)	N
1372	chr12	103272685	103272686	rs1718302	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs1718302-G	0.14	6E-10	(Phe)	0.31	[0.21-0.41] unit increase	Illumina [1288202] (imputed)	N
1373	chr12	103293296	103293297	rs139730988	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q23.2	NR	rs139730988-C	0.0416692	2E-8		0.0954255	[0.062-0.129] unit decrease	Affymetrix [17914406] (imputed)	N
1373	chr12	103295635	103295636	rs78985461	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs78985461-G		8E-12	(Phe)	0.34	[0.26-0.42] unit increase	Illumina [1288202] (imputed)	N
1373	chr12	103306578	103306579	rs118092776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q23.2	NR	rs118092776-T	NR	1E-9		0.2574	[0.17-0.34] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr12	103327437	103327438	rs73173954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.2		rs73173954-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1373	chr12	103348826	103348827	rs189898276	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.2		rs189898276-A	0.997561	7E-52		0.662453	[0.58-0.75] unit decrease	NR [11722792] (imputed)	N
1373	chr12	103354393	103354394	rs17450122	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	12q23.2	ASCL1	rs17450122-A		3E-25	(Phe)	0.42	[0.34-0.5] unit increase	Illumina [1288202] (imputed)	N
1373	chr12	103354393	103354394	rs17450122	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	12q23.2	ASCL1	rs17450122-A	0.09	3E-12	(Phe)	0.41	[0.29-0.53] unit increase	Illumina [1288202] (imputed)	N
1373	chr12	103361111	103361112	rs36104021	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q23.2	NR	rs36104021-C	NR	6E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		8E-10	(Phe (adjusted for Gly))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		7E-11	(Phe (adjusted for Ser))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		4E-13	(Phe (adjusted for Asn))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		3E-11	(Phe (adjusted for Pro))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		2E-9	(Met (adjusted for Phe))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		1E-7	(Tyr (adjusted for Phe))			Illumina [1288202] (imputed)	N
1373	chr12	103361378	103361379	rs17450273	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	12q23.2	PAH	rs17450273-?		1E-11	(Phe (adjusted for Gln))			Illumina [1288202] (imputed)	N
1373	chr12	103375413	103375414	rs17548007	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	12q23.2	intergenic	rs17548007-?	NR	5E-6		1.86		Illumina [636555]	N
1373	chr12	103391263	103391264	rs34637163	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	12q23.2	intergenic	rs34637163-A	0.132035	8E-6		0.698704	[0.4-1] unit increase	NR [7263501] (imputed)	N
1373	chr12	103415767	103415768	rs143009493	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.2	NR	rs143009493-G		2E-6		0.5954	[0.34-0.85] SD units increase	NR [10700000] (imputed)	N
1374	chr12	103437795	103437796	rs17041417	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.2		rs17041417-A	0.2	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1374	chr12	103437795	103437796	rs17041417	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.2	NR	rs17041417-A	0.1673	3E-12				NR [9056863] (imputed)	N
1374	chr12	103437795	103437796	rs17041417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q23.2	NR	rs17041417-A	0.180687335757869	2E-9		0.0072124503	[0.0049-0.0096] unit increase	NR [NR]	N
1374	chr12	103437795	103437796	rs17041417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q23.2	NR	rs17041417-A	0.180687335757869	3E-9		0.008780573	[0.0059-0.0117] unit increase	NR [NR]	N
1374	chr12	103437795	103437796	rs17041417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q23.2	NR	rs17041417-A	0.180687335757869	2E-9		0.011447053	[0.0077-0.0152] unit increase	NR [NR]	N
1374	chr12	103437795	103437796	rs17041417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12q23.2	NR	rs17041417-A	0.180687335757869	6E-9		0.009325971	[0.0062-0.0125] unit increase	NR [NR]	N
1374	chr12	103437795	103437796	rs17041417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q23.2	NR	rs17041417-A	0.180687335757869	2E-9		0.00732364	[0.0049-0.0097] unit increase	NR [NR]	N
1374	chr12	103445654	103445655	rs35012955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q23.2	NR	rs35012955-C	NR	1E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1374	chr12	103451721	103451722	rs11561324	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q23.2		rs11561324-C	0.18	8E-10		6.15	z score increase	Affymetrix [9061022] (imputed)	N
1374	chr12	103456083	103456084	rs7958371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.2		rs7958371-A	0.3552	6E-9		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1374	chr12	103456083	103456084	rs7958371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.2	Intergenic	rs7958371-A	0.3552	8E-9	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1374	chr12	103483093	103483094	rs10745954	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q23.2	RP11-552I14.1	rs10745954-A	0.519677	2E-13		0.0143879	[0.011-0.018] unit increase	Affymetrix [NR] (imputed)	N
1374	chr12	103483093	103483094	rs10745954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q23.2	NR	rs10745954-G	0.48044699999999996	6E-11		0.0129654	[0.009-0.0169] unit increase	Affymetrix [16583148] (imputed)	N
1374	chr12	103483093	103483094	rs10745954	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q23.2	NR	rs10745954-?	NR	8E-7		0.04377499	[0.026-0.061] unit decrease	Illumina [30861016] (imputed)	N
1374	chr12	103483093	103483094	rs10745954	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	12q23.2	ASCL1	rs10745954-A	NR	2E-11		0.039	[0.03-0.05] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1374	chr12	103495150	103495151	rs10778213	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q23.2	NR	rs10778213-?	NR	3E-6		0.0406389	[0.024-0.058] unit decrease	Illumina [30861016] (imputed)	N
1374	chr12	103495150	103495151	rs10778213	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	12q23.2	Unknown	rs10778213-G	NR	1E-10		0.12	[NR] mg/dl decrease	Illumina [336108]	N
1374	chr12	103512313	103512314	rs4764725	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	12q23.2	ASCL1	rs4764725-T	0.54	2E-16	(BMI-adjusted)	0.032	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1374	chr12	103522951	103522952	rs4764939	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q23.2	NR	rs4764939-C	0.530358	6E-17		0.0170961	[0.013-0.021] unit increase	NR [NR]	N
1374	chr12	103535019	103535020	rs7135240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q23.2		rs7135240-A	NR	5E-10		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1374	chr12	103535318	103535318	rs199542783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q23.2		rs199542783-TTG	NR	6E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1374	chr12	103537265	103537266	rs10778215	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q23.2		rs10778215-T	0.527993	6E-10		0.0247878	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1374	chr12	103537265	103537266	rs10778215	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q23.2	NR	rs10778215-A	0.472109	3E-22		0.024324	[0.019-0.029] unit increase	Affymetrix [16585745] (imputed)	N
1374	chr12	103537265	103537266	rs10778215	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	12q23.2	ASCL1	rs10778215-T	0.49	2E-20		0.033	[0.025-0.041] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1374	chr12	103537265	103537266	rs10778215	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q23.2	NR	rs10778215-T	NR	5E-8		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1374	chr12	103541942	103541943	rs12300756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q23.2	NR	rs12300756-T	NR	4E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	7E-10		0.0237871	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	3E-8		0.0207734	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	1E-10		0.0249744	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	2E-9		0.0225779	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	1E-8		0.0216409	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	3E-9		0.0226043	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556108	103556109	rs7956099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q23.2		rs7956099-T	0.525018	1E-8		0.0217945	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1375	chr12	103556971	103556972	rs2292996	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	12q23.2		rs2292996-T	0.525123	5E-8		0.0215867	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1375	chr12	103581040	103581041	rs1879250	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs1879250-?	NR	2E-8				NR [2625067]	N
1375	chr12	103581040	103581041	rs1879250	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA		NR	rs1879250-C	0.378	1E-8		0.0062991	[0.0041-0.0085] unit decrease	NR [9732723] (imputed)	N
1375	chr12	103594061	103594062	rs10860960	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	12q23.2	NR	rs10860960-T	0.3787	2E-8		0.06275753	[0.041-0.085] unit decrease	NR [NR]	N
1375	chr12	103596454	103596455	rs10860964	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q23.2	NR	rs10860964-?		5E-8				NR [8377093]	N
1375	chr12	103596454	103596455	rs10860964	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q23.2	C12orf42	rs10860964-T	NR	2E-8	(EA)	1.065	[1.04-1.09]	Illumina [6627481] (imputed)	N
1375	chr12	103596454	103596455	rs10860964	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12q23.2	C12orf42	rs10860964-?	NR	3E-7				Illumina [8000000] (imputed)	N
1375	chr12	103596454	103596455	rs10860964	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q23.2	NR	rs10860964-T	NR	9E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1375	chr12	103596454	103596455	rs10860964	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12q23.2	C12orf42	rs10860964-T	0.646	5E-8		1.06	[1.038-1.083]	Affymetrix, Illumina [9005918] (imputed)	N
1375	chr12	103605336	103605337	rs10860965	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	12q23.2	NR	rs10860965-?	NR	5E-6				Illumina [up to 5582932] (imputed)	N
1375	chr12	103608321	103608322	rs184768787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.2		rs184768787-C	0.995364	2E-42		0.438104	[0.38-0.5] unit decrease	NR [11722792] (imputed)	N
1375	chr12	103612732	103612733	rs1961982	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	12q23.2	NR	rs1961982-A	NR	7E-7		4.971417	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
1375	chr12	103614197	103614198	rs10860971	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (pleiotropy)	944 European ancestry cases, 4,320 European ancestry controls	NA	12q23.2	C12orf41	rs10860971-?	NR	4E-6		1.27	1.15-1.4	Illumina [959859] (imputed)	N
1375	chr12	103640951	103640952	rs1520194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.2	NR	rs1520194-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1375	chr12	103656232	103656233	rs1464321	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q23.2	C12orf42	rs1464321-A	0.739	6E-6	(EA, women)	0.024	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1375	chr12	103658095	103658096	rs4764949	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q23.2	C12orf42	rs4764949-A	0.674209	4E-16		0.0119345	[0.0091-0.0148] unit increase	Affymetrix [12370749]	N
1375	chr12	103658095	103658096	rs4764949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.2		rs4764949-?	NR	7E-21				NR [~ 8900000] (imputed)	N
1375	chr12	103662277	103662277	rs11451718	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q23.2	NR	rs11451718-TA	0.32	1E-11		0.018070033	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1376	chr12	103681233	103681234	rs61101437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q23.2		rs61101437-C	NR	2E-8		0.0638	[0.041-0.086] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1376	chr12	103706753	103706754	rs6539064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q23.2		rs6539064-G	NR	5E-14		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1376	chr12	103706753	103706754	rs6539064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.2	NR	rs6539064-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1376	chr12	103706753	103706754	rs6539064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q23.2	NA	rs6539064-C	0.7468	1E-23		0.0194	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1376	chr12	103706753	103706754	rs6539064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q23.2	NA	rs6539064-C	0.7468	1E-23		0.0194	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1376	chr12	103706753	103706754	rs6539064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q23.2	NA	rs6539064-C	0.7468	1E-23		0.0194	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1376	chr12	103711066	103711067	rs182543447	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.2	NR	rs182543447-G		5E-15		0.6817	[0.51-0.85] SD units increase	NR [10700000] (imputed)	N
1376	chr12	103736498	103736499	rs12817542	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q23.2	C12orf42	rs12817542-C	0.939168	2E-9		0.0176001	[0.012-0.023] unit decrease	Affymetrix [12370749]	N
1376	chr12	103796610	103796611	rs138477082	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q23.2	C12orf42, STAB2	rs138477082-T	NR	6E-6	(daytime resting duration, weekdays)	0.295	[0.17-0.42] unit increase	Affymetrix [7141204] (imputed)	N
1377	chr12	103887476	103887477	rs1320344	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	12q23.2	C12orf42	rs1320344-A	0.314107	2E-12		0.069094345	[0.05-0.088] unit increase	Affymetrix [7288503] (imputed)	N
1377	chr12	103887476	103887477	rs1320344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	12q23.2		rs1320344-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1377	chr12	103889030	103889031	rs12422517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	12q23.2		rs12422517-G	NR	6E-13		0.0663	[0.048-0.084] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1377	chr12	103892940	103892941	rs12582330	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12q23.2	C12orf42	rs12582330-G	0.284	8E-15		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1377	chr12	103892940	103892941	rs12582330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q23.2		rs12582330-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1377	chr12	103905374	103905375	rs10082873	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	12q23.3	STAB2	rs10082873-G	NR	4E-8		0.89	[0.85-0.93]	Illumina [3860730] (imputed)	N
1377	chr12	103911042	103911043	rs17034045	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	12q23.3	NR	rs17034045-C	0.07267	1E-6		0.6751	[0.11-1.24] unit increase	Illumina [at least 567677] (imputed)	N
1377	chr12	103912505	103912506	rs10861032	21878436	Sampietro ML	2011-08-30	Hum Mol Genet	A genome-wide association study identifies a region at chromosome 12 as a potential susceptibility locus for restenosis after percutaneous coronary intervention.	Coronary restenosis	295 European ancestry cases, 571 European ancestry controls	455 European ancestry cases, 2,880 European ancestry controls	12q23.3	STAB2, C12orf42, NT5DC3	rs10861032-C	NR	1E-7				Illumina [556099]	N
1377	chr12	103916079	103916080	rs6539078	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q23.3	LOC105369945	rs6539078-T	0.591	9E-14		0.894	[0.86-0.92]	Illumina [11270530] (imputed)	N
1377	chr12	103929820	103929821	rs149580590	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs149580590-G		2E-14		0.6322	[0.47-0.8] SD units increase	NR [10700000] (imputed)	N
1378	chr12	103961763	103961764	rs79795993	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12q23.3	NR	rs79795993-?	NR	5E-7		0.0612	[0.037-0.085] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1378	chr12	103970435	103970436	rs79736290	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q23.3	NR	rs79736290-G	0.01568	3E-9	(SEPT11)	0.03327	NR unit decrease	Illumina [1671387] (imputed)	N
1378	chr12	103980870	103980871	rs7307320	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	12q23.3	STAB2	rs7307320-G	NR	1E-8		0.0176989	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1378	chr12	103986525	103986526	rs73391993	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12q23.3	STAB2	rs73391993-T	0.008	2E-8	(Macrolides [J01FA])	3.99		Illumina [16500000] (imputed)	N
1378	chr12	104000318	104000319	rs1070073	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs1070073-?	NR	2E-36	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1378	chr12	104000318	104000319	rs1070073	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs1070073-?	NR	2E-36				Affymetrix, Illumina [10537485] (imputed)	N
1378	chr12	104000318	104000319	rs1070073	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs1070073-?	NR	2E-14				Affymetrix, Illumina [13887196] (imputed)	N
1378	chr12	104000318	104000319	rs1070073	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs1070073-?	NR	1E-13	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1378	chr12	104000469	104000470	rs2723889	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs2723889-?	NR	2E-14				Affymetrix, Illumina [13887196] (imputed)	N
1378	chr12	104000469	104000470	rs2723889	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs2723889-?	NR	1E-13	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1378	chr12	104007417	104007418	rs11111679	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs11111679-?	NR	2E-14	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1378	chr12	104007417	104007418	rs11111679	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs11111679-?	NR	1E-14				Affymetrix, Illumina [10537485] (imputed)	N
1378	chr12	104010923	104010924	rs703610	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	12q23.3	NR	rs703610-G	0.528	7E-7		1.2964116	[NR]	NR [9372253] (imputed)	N
1378	chr12	104027816	104027817	rs1993919	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		STAB2	rs1993919-G	0.12	4E-6		0.15	[0.091-0.209] unit decrease	Illumina [3700000] (imputed)	N
1378	chr12	104034318	104034319	rs1650123	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs1650123-C	0.577816124610592	6E-6	(IGP8)	0.1516	[0.086-0.218] unit decrease	Illumina [~ 2500000] (imputed)	N
1378	chr12	104034318	104034319	rs1650123	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs1650123-C	0.577816124610592	1E-6	(IGP48)	0.1628	[0.097-0.229] unit decrease	Illumina [~ 2500000] (imputed)	N
1378	chr12	104048453	104048454	rs1609860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q23.3	STAB2	rs1609860-A	0.081624	1E-9		0.024556605	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1378	chr12	104048453	104048454	rs1609860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.3	NR	rs1609860-A	0.0816357	8E-10				Affymetrix, Illumina [23467995] (imputed)	N
1378	chr12	104048453	104048454	rs1609860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q23.3	NR	rs1609860-A	0.081878	5E-12		0.023587	[0.017-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1378	chr12	104052225	104052226	rs190613886	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs190613886-G		3E-15		0.6063	[0.45-0.76] SD units decrease	NR [10700000] (imputed)	N
1378	chr12	104057383	104057384	rs11111707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q23.3		rs11111707-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1379	chr12	104108506	104108507	rs7138824	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.3	NR	rs7138824-?	NR	4E-8				Affymetrix [NR]	N
1379	chr12	104117461	104117462	rs11111736	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	12q23.3	NR	rs11111736-A	0.0153	2E-6		0.1963	[0.12-0.28] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1379	chr12	104127352	104127353	rs73192004	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs73192004-?	NR	5E-9				Affymetrix, Illumina [10537485] (imputed)	N
1379	chr12	104127352	104127353	rs73192004	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs73192004-?	NR	2E-8	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1379	chr12	104139033	104139034	rs7306642	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	12q23.3	STAB2	rs7306642-A	0.07	3E-6	(FVIII Activity)	0.3	[0.18-0.42] IU/dL increase	Illumina [442728]	N
1379	chr12	104147206	104147207	rs3751198	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs3751198-?	NR	6E-18				Affymetrix, Illumina [13887196] (imputed)	N
1379	chr12	104147206	104147207	rs3751198	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs3751198-?	NR	2E-17	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs4981022-A	0.69	7E-41		0.035	[0.03-0.04] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q23.3	STAB2	rs4981022-A	0.69	5E-37	(EA)	0.0348	[0.03-0.04] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs4981022-A	0.69	3E-20		0.0251	[0.02-0.03] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	12q23.3	STAB2	rs4981022-A	0.69	1E-17	(EA)	0.0255	[0.02-0.031] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	12q23.3	STAB2	rs4981022-?	NR	1E-8		1.2658228	[1.18-1.37]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1379	chr12	104149873	104149874	rs4981022	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	vWF levels	17,596 European ancestry individuals	Up to 7,604 European ancestry individuals	12q23.3	STAB2	rs4981022-?	NR	7E-10		3.6	[0.4-6.8] unit decrease	Affymetrix, Illumina [2742821] (imputed)	N
1379	chr12	104152931	104152932	rs141041254	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	12q23.3		rs141041254-?	NR	2E-9		0.166879	[0.11-0.22] unit decrease	NR [9800000] (imputed)	N
1379	chr12	104157501	104157502	rs3751196	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	12q23.3	STAB2	rs3751196-A	0.06	3E-7	(Ajusted for ApoE)	0.07	[0.05-0.09] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
1379	chr12	104157501	104157502	rs3751196	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	12q23.3	STAB2	rs3751196-A	0.06	2E-7		0.07	[0.05-0.09] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
1379	chr12	104159752	104159753	rs138989232	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	12q23.3		rs138989232-A	0.0043	7E-8		0.5699	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1379	chr12	104192823	104192824	rs4964805	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	12q23.3	NT5DC3	rs4964805-?	NR	5E-6				Affymetrix [504219]	N
1380	chr12	104210991	104210992	rs116878472	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	12q23.3	NT5DC3	rs116878472-T	0.97	3E-8		8.392	[5.44-11.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1380	chr12	104245045	104245046	rs10507170	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q23.3	TTC41P	rs10507170-G	0.8806	3E-8		0.125	[0.082-0.168] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1380	chr12	104258079	104258080	rs63658260	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.3	NR	rs63658260-G	0.102	8E-133	(Endoplasmin, HSP90B1.6393.63.3)	0.96	[0.88-1.04] unit increase	Affymetrix [10572788] (imputed)	N
1380	chr12	104261834	104261835	rs187503377	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	STAB2	rs187503377-C		1E-23		0.9653	[0.77-1.16] SD units decrease	NR [10700000] (imputed)	N
1380	chr12	104309711	104309712	rs2583273	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSP90B1	5,367 Icelandic ancestry individuals	NA	12q23.3		rs2583273-C	0.1897	7E-156		0.592416	[0.55-0.64] unit increase	Illumina [7506463] (imputed)	N
1380	chr12	104313642	104313643	rs2583283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q23.3		rs2583283-A	NR	6E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1380	chr12	104313942	104313943	rs2722176	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q23.3	TTC41P	rs2722176-T	0.3233	3E-12		0.0137635	[0.0099-0.0176] unit decrease	NR [13737936] (imputed)	N
1380	chr12	104316840	104316841	rs2583223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q23.3		rs2583223-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1380	chr12	104320990	104320991	rs1165675	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q23.3		rs1165675-?	NR	6E-10		0.0130785	[0.0084-0.0177] unit increase	Affymetrix [20259828] (imputed)	N
1380	chr12	104327425	104327426	rs1165683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPM	5,365 Icelandic ancestry individuals	NA	12q23.3		rs1165683-A	0.1345	6E-103		0.558759	[0.51-0.61] unit increase	Illumina [7506463] (imputed)	N
1381	chr12	104338689	104338690	rs2583260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q23.3	TDG	rs2583260-?	NR	7E-6	(LPC 20:3)	0.20303565	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1381	chr12	104340203	104340204	rs1165693	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.3	HSP90B1	rs1165693-A	0.321	4E-795	(Endoplasmin, HSP90B1.6393.63.3)	1.1	[1.06-1.14] unit increase	Affymetrix [10572788] (imputed)	N
1381	chr12	104348429	104348430	rs2576975	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q23.3	NR	rs2576975-A	0.698125	8E-445	(HSP90B1, 6393_63_3)	1.0233833	[0.99-1.06] unit decrease	Illumina [> 1000000] (imputed)	N
1381	chr12	104348429	104348430	rs2576975	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q23.3	NR	rs2576975-A	0.698125	3E-184	(HNRNPM, 12783_29_3)	0.7194256	[0.67-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
1381	chr12	104350850	104350851	rs703657	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q23.3	HSP90B1	rs703657-?	NR	6E-6	(LPE 18:1)	0.16032849	[0.091-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1381	chr12	104354172	104354173	rs11612024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q23.3		rs11612024-T	NR	1E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1381	chr12	104354172	104354173	rs11612024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs11612024-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1381	chr12	104376623	104376624	rs140436257	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	12q23.3	TDG	rs140436257-G	0.026	4E-6		0.067	[0.038-0.096] unit increase	Illumina [at least 81396]	N
1381	chr12	104402484	104402485	rs11111869	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	12q23.3	GLT8D2	rs11111869-?	NA	5E-25		3.18	[2.57-3.79] unit decrease	Affymetrix [5541230] (imputed)	N
1381	chr12	104402484	104402485	rs11111869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q23.3	NR	rs11111869-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1381	chr12	104402484	104402485	rs11111869	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	12q23.3	GLT8D2	rs11111869-G	0.83	5E-10		3.174	[2.17-4.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1381	chr12	104408831	104408832	rs117801489	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OMD	5,368 Icelandic ancestry individuals	NA	12q23.3		rs117801489-C	0.04146	9E-23		0.46126	[0.37-0.55] unit decrease	Illumina [7506463] (imputed)	N
1381	chr12	104408831	104408832	rs117801489	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OMD	5,364 Icelandic ancestry individuals	NA	12q23.3		rs117801489-C	0.04146	9E-17		0.387737	[0.3-0.48] unit decrease	Illumina [7506463] (imputed)	N
1381	chr12	104408831	104408832	rs117801489	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FMOD	5,365 Icelandic ancestry individuals	NA	12q23.3		rs117801489-C	0.04146	2E-15		0.370665	[0.28-0.46] unit decrease	Illumina [7506463] (imputed)	N
1381	chr12	104409024	104409025	rs66613683	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs66613683-T	0.831094	2E-14		0.0874935	[0.064-0.111] decrease	Affymetrix [11014269] (imputed)	N
1381	chr12	104415243	104415244	rs11553764	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	12q23.3	GLT8D2	rs11553764-T	0.18	2E-17		3.55	[2.73-4.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1381	chr12	104415243	104415244	rs11553764	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q23.3	GLT8D2	rs11553764-C	0.8302	4E-13		0.135	[0.098-0.172] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1381	chr12	104418017	104418017	rs201897810	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs201897810-C		2E-23		0.8313	[0.67-1] SD units decrease	NR [10700000] (imputed)	N
1381	chr12	104421807	104421808	rs2629751	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	12q23.3	GLT8D2	rs2629751-G	0.31	1E-7	(Binary F0/F4)			Illumina [780650] (imputed)	N
1381	chr12	104445741	104445742	rs1564892	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	12q23.3	GLT8D2	rs1564892-A	0.76	2E-10		0.08	[0.041-0.119] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1381	chr12	104448390	104448391	rs117238625	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble VCAM-1 levels	5,284 Finnish ancestry individuals	NA	12q23.3	HSP90B1	rs117238625-A	0.023	3E-14		0.51	unit increase	Illumina [NR] (imputed)	N
1381	chr12	104460933	104460934	rs7306771	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q23.3	TXNRD1	rs7306771-T	0.635625	5E-6	(TXNRD1, 13967_14_3)	0.114508055	[0.066-0.163] unit decrease	Illumina [> 1000000] (imputed)	N
1382	chr12	104503805	104503806	rs2629745	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q23.3	HCFC2	rs2629745-A	0.88	2E-12		0.69	[0.49-0.89] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1382	chr12	104503805	104503806	rs2629745	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q23.3	HCFC2	rs2629745-A	0.8774	3E-11		0.6788	[0.48-0.88] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1383	chr12	104612224	104612225	rs12303096	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	12q23.3	TXNRD1	rs12303096-A	NR	8E-6		0.141	[0.078-0.204] unit increase	Illumina [NR] (imputed)	N
1383	chr12	104628475	104628476	rs7969894	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs7969894-G		2E-11		0.4004	[0.28-0.52] SD units decrease	NR [10700000] (imputed)	N
1383	chr12	104645404	104645405	rs7975161	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	12q23.3	TXNRD1, NFYB	rs7975161-T	0.16	1E-6		0.023	[0.013-0.033] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
1383	chr12	104658885	104658886	rs12299450	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	12q23.3	TXNRD1	rs12299450-T	0.94603	1E-7		0.5373	[0.34-0.74] unit decrease	Affymetrix [8590397] (imputed)	N
1384	chr12	104739223	104739224	rs111382878	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q23.3		rs111382878-G	0.022308	6E-6		0.10266	[0.058-0.147] unit increase	Affymetrix [15580782] (imputed)	N
1384	chr12	104754499	104754500	rs77724872	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	12q23.3	EID3	rs77724872-?	0.047	7E-7	(S-DCT concentration, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
1384	chr12	104795366	104795367	rs191631370	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	12q23.3		rs191631370-T	0.990629	2E-11		0.150145	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1384	chr12	104795366	104795367	rs191631370	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs191631370-T		2E-19		0.8258	[0.65-1.01] SD units decrease	NR [10700000] (imputed)	N
1384	chr12	104804613	104804614	rs56186534	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	12q23.3	TXNRD1, CHST11, IGANRP	rs56186534-C	0.06	7E-7		0.56	[0.34-0.78] unit increase	Illumina [7797256] (imputed)	N
1384	chr12	104818191	104818192	rs11112046	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.3	CHST11	rs11112046-A	0.179	3E-6	(IGF1 free )	0.02	[NR] ng/mL increase	Illumina [899892]	N
1384	chr12	104820749	104820750	rs114818057	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q23.3	NR	rs114818057-T	0.0122	2E-8	(LRRK2)	0.06182	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr12	104842116	104842117	rs12305866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs12305866-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1384	chr12	104848226	104848227	rs7976582	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	12q23.3	CHST11	rs7976582-?	NR	4E-6				Affymetrix, Illumina [1184972]	N
1385	chr12	104870423	104870424	rs10861224	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST11	5,342 Icelandic ancestry individuals	NA	12q23.3		rs10861224-C	0.1187	2E-18		0.233866	[0.18-0.29] unit decrease	Illumina [7506463] (imputed)	N
1385	chr12	104880940	104880941	rs562093074	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q23.3	CHST11	rs562093074-T	0.0027	3E-6		0.8197	[0.47-1.17] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1385	chr12	104900583	104900584	rs1882496	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q23.3	NR	rs1882496-G	0.5603	2E-6		0.0438	[0.026-0.062] unit increase	Illumina [up to 1980188] (imputed)	N
1385	chr12	104925883	104925884	rs1795851	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	12q23.3	NR	rs1795851-G	0.1917	9E-6		0.0521	[0.029-0.075] unit increase	Illumina [up to 1980188] (imputed)	N
1385	chr12	104944992	104944993	rs191454456	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	12q23.3	NR	rs191454456-G		2E-6		0.3774	[0.22-0.53] SD units decrease	NR [10700000] (imputed)	N
1385	chr12	104957536	104957537	rs76960947	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12q23.3		rs76960947-T	0.952057	4E-6		0.0276241	[0.016-0.039] unit decrease	Illumina [13900000] (imputed)	N
1385	chr12	104974950	104974951	rs12318001	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCN	5,353 Icelandic ancestry individuals	NA	12q23.3		rs12318001-C	0.09459	3E-28		0.336438	[0.28-0.4] unit decrease	Illumina [7506463] (imputed)	N
1385	chr12	104981593	104981594	rs1650133	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST11	5,342 Icelandic ancestry individuals	NA	12q23.3		rs1650133-C	0.4865	7E-34		0.210316	[0.18-0.24] unit decrease	Illumina [7506463] (imputed)	N
1385	chr12	104981656	104981657	rs1650132	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q23.3	CHST11	rs1650132-A	0.5153125	3E-19	(CHST11, 7779_86_3)	0.21398276	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1385	chr12	104981678	104981679	rs61022741	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q23.3	CHST11	rs61022741-G	0.486	2E-39	(Carbohydrate sulfotransferase 11, CHST11.7779.86.3)	0.32	[0.28-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1386	chr12	105017163	105017164	rs12811699	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	12q23.3	CHST11	rs12811699-?	NR	8E-6		1.74	[1.36-2.21]	Illumina [948142]	N
1386	chr12	105027341	105027342	rs11608410	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	12q23.3		rs11608410-?	NR	9E-6				Illumina [7401356] (imputed)	N
1386	chr12	105034746	105034747	rs76714130	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	12q23.3	CHST11	rs76714130-G	NR	6E-6		11.1853	[6.53-15.84] unit decrease	Illumina [NR] (imputed)	N
1386	chr12	105052812	105052813	rs7965164	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	12q23.3	Intergenic	rs7965164-?	NR	5E-7		1.434	[NR]	Affymetrix [492217] (imputed)	N
1387	chr12	105156451	105156452	rs12320918	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.3	CHST11	rs12320918-?	NR	1E-8		0.02117549	[0.014-0.029] unit increase	Illumina [27896057] (imputed)	N
1387	chr12	105200087	105200088	rs9737956	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		12q23.3	SLC41A2	rs9737956-?		8E-6				Affymetrix [7000000] (imputed)	N
1388	chr12	105271084	105271085	rs7299019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q23.3		rs7299019-T	0.2417	5E-11		0.0154012	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
1388	chr12	105271084	105271085	rs7299019	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	12q23.3	NR	rs7299019-?	NR	2E-8	(40 S ribosomal protein SA)	0.27	[0.17-0.37] unit increase	Illumina [4020654] (imputed)	N
1388	chr12	105328198	105328199	rs7975754	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	12q23.3	SLC41A2	rs7975754-C	0.25	9E-6				Illumina [331281]	N
1388	chr12	105353243	105353244	rs4075503	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		12q23.3	intergenic	rs4075503-?		9E-7				Affymetrix [7000000] (imputed)	N
1389	chr12	105386644	105386645	rs4331189	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		12q23.3	C12orf45	rs4331189-?		3E-7				Affymetrix [7000000] (imputed)	N
1389	chr12	105452441	105452442	rs10861337	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs10861337-G	0.900366844872369	2E-7	(IGP11)	0.2653	[0.16-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1389	chr12	105458796	105458797	rs10861342	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs10861342-C	0.099068749529359	2E-6	(IGP51)	0.2456	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1389	chr12	105464035	105464036	rs7954946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs7954946-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1389	chr12	105490148	105490149	rs12230762	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	12q23.3	ALDH1L2, KIAA1033	rs12230762-?		9E-6		1.24	[1.12-1.37]	Illumina [5352724] (imputed)	N
1390	chr12	105546171	105546172	rs1663564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q23.3	NR	rs1663564-A	NR	7E-12		0.0281	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1390	chr12	105546171	105546172	rs1663564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q23.3	NR	rs1663564-A	NR	6E-12		0.0282	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1390	chr12	105546171	105546172	rs1663564	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q23.3	KIAA1033	rs1663564-?	NR	1E-8		0.0245	[0.017-0.032] unit increase	Affymetrix [5701386] (imputed)	N
1390	chr12	105546171	105546172	rs1663564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q23.3	Intergenic	rs1663564-A	0.9166	7E-9	(MTAG)	0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1390	chr12	105570598	105570599	rs184843985	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q23.3	APPL2	rs184843985-T	NR	7E-6		0.41132	[0.23-0.59] unit decrease	Illumina [13520550] (imputed)	N
1390	chr12	105606067	105606068	rs1196760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.3		rs1196760-C	0.9105	2E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1390	chr12	105606067	105606068	rs1196760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.3	Intergenic	rs1196760-C	0.9105	4E-10	(MTAG)	0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1391	chr12	105646394	105646395	rs4964127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12q23.3		rs4964127-G	NR	2E-12		0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1391	chr12	105650074	105650075	rs4964343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q23.3		rs4964343-T	NR	2E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1391	chr12	105680359	105680360	rs35604439	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides sp002160055 abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.3		rs35604439-C	0.0461382	3E-8		0.169455	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1391	chr12	105694871	105694872	rs140887899	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	12q23.3	NR	rs140887899-G	0.9897	9E-6		3.3507	[2.82-3.88]	Illumina [8567708] (imputed)	N
1392	chr12	105782675	105782676	rs6539209	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.3	NR	rs6539209-?		7E-6				Illumina [4322238] (imputed)	N
1392	chr12	105784902	105784903	rs117329947	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	12q23.3	C12orf75	rs117329947-C	0.014	9E-7		1.79	[1.42-2.25]	Illumina [1438399] (imputed)	N
1392	chr12	105812636	105812637	rs73383278	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q23.3	NR	rs73383278-G	0.02265	8E-9	(SELENBP1)	1.336	NR unit increase	Illumina [1671387] (imputed)	N
1392	chr12	105838060	105838061	rs75211849	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	12q23.3	C12orf75	rs75211849-A	NR	9E-6		0.13568191	[0.076-0.196] unit decrease	Affymetrix [9576485] (imputed)	N
1392	chr12	105871913	105871914	rs11112548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q23.3		rs11112548-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1392	chr12	105871913	105871914	rs11112548	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q23.3	C12orf75	rs11112548-A	0.9531	1E-13		0.4608	[0.34-0.58] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1392	chr12	105897007	105897008	rs12299724	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12299724-A	0.883433	2E-8		0.0764562	[0.049-0.104] decrease	Affymetrix [11014269] (imputed)	N
1393	chr12	105931765	105931766	rs7299244	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.3		rs7299244-G	0.23	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1393	chr12	105931765	105931766	rs7299244	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.3	NR	rs7299244-G	0.2394	9E-12				NR [9056863] (imputed)	N
1393	chr12	106003785	106003786	rs11112613	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response adjusted for insulin sensitivity index	up to 4,565 European individuals, up to 413 Old Order Amish (founder/genetic isolate) individuals	20,461 European individuals	12q23.3	C12orf75	rs11112613-A	NR	7E-7		0.15	[0.089-0.211] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1393	chr12	106003785	106003786	rs11112613	24699409	Prokopenko I	2014-04-03	PLoS Genet	A central role for GRB10 in regulation of islet function in man.	Corrected insulin response	up to 4,961 European individuals, up to 411 Old Order Amish (founder/genetic isolate) individuals	20,722 European individuals	12q23.3	C12orf75	rs11112613-A	NR	6E-7		0.15	[0.093-0.207] unit decrease	Affymetrix, Illumina [at least 1961018] (imputed)	N
1394	chr12	106046555	106046556	rs77266018	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q23.3	NR	rs77266018-?	NR	2E-6		4.796	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1394	chr12	106060101	106060102	rs10778419	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	12q23.3	intergenic	rs10778419-A	0.145	9E-6		0.14	[NR] unit increase	Illumina [625127]	N
1394	chr12	106066588	106066589	rs7134108	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	12q23.3	Intergenic	rs7134108-?		5E-6		2.919304	[NR] unit increase	Illumina [575353]	N
1394	chr12	106103567	106103568	rs3863381	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	12q23.3	RP11-266E14.1	rs3863381-G	NR	7E-6	(sleep onset)	0.2571	[0.15-0.37] unit increase	Affymetrix [7141204] (imputed)	N
1394	chr12	106104822	106104823	rs4590982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs4590982-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1394	chr12	106108718	106108719	rs10219670	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	12q23.3	C12orf75, NUAK1	rs10219670-C	0.42	4E-6	(Cortical Ab)			Illumina [6108668] (imputed)	N
1394	chr12	106150106	106150107	rs11112715	30324795	Moen GH	2018-09-18	Eur J Endocrinol	Genetic determinants of glucose levels in pregnancy: genetic risk scores analysis and GWAS in the Norwegian STORK cohort	Two-hour glucose in pregnancy (gestational week 30-32)	512 Scandinavian ancestry individuals	NA	12q23.3	NUAK1	rs11112715-T	NR	3E-8		0.52	[0.34-0.70] unit increase	Illumina [8709903] (imputed)	N
1394	chr12	106150106	106150107	rs11112715	30324795	Moen GH	2018-09-18	Eur J Endocrinol	Genetic determinants of glucose levels in pregnancy: genetic risk scores analysis and GWAS in the Norwegian STORK cohort	General glucose level in pregnancy (gestational week 30-32)	506 Scandinavian ancestry individuals	NA	12q23.3	NUAK1	rs11112715-T	NR	2E-8		0.53	[0.35-0.71] unit increase	Illumina [8709903] (imputed)	N
1395	chr12	106214507	106214508	rs12296982	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.3	NR	rs12296982-?	NR	2E-37				Affymetrix [NR]	N
1395	chr12	106288444	106288445	rs12825669	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q23.3	NR	rs12825669-G	0.6672	4E-8		0.0226	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1396	chr12	106385972	106385973	rs73192197	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs73192197-?		4E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1396	chr12	106385972	106385973	rs73192197	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs73192197-?		6E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1396	chr12	106390458	106390459	rs148121501	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	12q23.3	NR	rs148121501-?	NR	2E-6		0.9709	[0.61-1.33] unit increase	Illumina [at least 560000] (imputed)	N
1396	chr12	106419958	106419959	rs748000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q23.3	NR	rs748000-G	NR	4E-14		0.0255	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1396	chr12	106423486	106423487	rs987455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs987455-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1396	chr12	106427084	106427086	rs10593126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q23.3		rs10593126-C	NR	2E-17		0.0273	[0.021-0.034] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1397	chr12	106443250	106443251	rs12369969	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12369969-?		7E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1397	chr12	106443250	106443251	rs12369969	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12369969-?		3E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1397	chr12	106459901	106459902	rs6539247	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	12q23.3	NUAK1	rs6539247-T	0.451	6E-7	(IIV)	0.2	[0.12-0.28] unit decrease	Illumina [799713]	N
1397	chr12	106459901	106459902	rs6539247	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	12q23.3	NUAK1	rs6539247-T	0.429	3E-6	(HRTSE)	0.82	[0.49-1.15] unit decrease	Illumina [799713]	N
1397	chr12	106461759	106461760	rs3741884	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs3741884-?		2E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	12q23.3		rs12146713-C	0.09	7E-8				NR [13131314] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	12q23.3		rs12146713-C	0.09	4E-7				Affymetrix [9061022] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q23.3		rs12146713-C	0.09	1E-260		34.48	z score increase	Affymetrix [9061022] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q23.3		rs12146713-C	0.09	3E-92		20.38	z score increase	Affymetrix [9061022] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	12q23.3		rs12146713-C	0.09	5E-6				NR [13131314] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.3		rs12146713-C	0.09	1E-93		20.53	z score increase	Affymetrix [9061022] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q23.3	NR	rs12146713-C	0.095	1E-17				NR [9056863] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.3	NR	rs12146713-C	0.095	1E-17				NR [9056863] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals		12q23.3	NUAK1	rs12146713-C	0.09615	2E-13		0.102056	[0.075-0.129] unit decrease	Affymetrix [8165723] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	12q23.3		rs12146713-?	NR	2E-34				NR [9705931] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q23.3	NOSTRIN, SPC25	rs12146713-?		4E-19				NR [7428630] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		4E-32				NR [7428630] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q23.3	FAM53A, SLBP, TMEM129, TACC3	rs12146713-?		3E-32				NR [7428630] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q23.3	CADPS	rs12146713-?		8E-19				NR [7428630] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q23.3	NUAK1, TCP11L2, POLR3B, RP11-144F15.1, RFX4, RIC8B	rs12146713-?		6E-52				NR [7428630] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs12146713-?	NR	3E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs12146713-?	NR	3E-8	(left lateral occipital)			NR [9227495] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs12146713-?	NR	2E-14	(right lateral ventricle)			NR [9227495] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs12146713-?	NR	1E-12	(left lateral ventricle)			NR [9227495] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		8E-13	(Fornix (column and body))			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		2E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		8E-9	(Sagittal stratum)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		8E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		2E-12	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		6E-13	(Fornix (column and body))			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		9E-11	(Fornix (column and body))			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		5E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		2E-10	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		1E-14	(Superior corona radiata)			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	12q23.3	NR	rs12146713-?		9E-13	(Fornix (column and body))			NR [8955960] (imputed)	N
1397	chr12	106476804	106476805	rs12146713	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	12q23.3	NUAK1	rs12146713-T	0.92	3E-13		7.28	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1397	chr12	106480245	106480246	rs1978730	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs1978730-?	NR	7E-10	(left insula)			NR [9227495] (imputed)	N
1397	chr12	106480927	106480928	rs73193841	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	12q23.3	NR	rs73193841-?		7E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1397	chr12	106481035	106481036	rs7301800	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	12q23.3	NR	rs7301800-G	0.67	8E-6				Illumina [4877242] (imputed)	N
1397	chr12	106526370	106526371	rs115095912	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMIM13	5,353 Icelandic ancestry individuals	NA	12q23.3		rs115095912-A	0.009989	5E-13		0.216965	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
1398	chr12	106626431	106626432	rs1215759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs1215759-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1398	chr12	106646352	106646353	rs3741882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q23.3		rs3741882-A	0.530562	3E-10		0.0131641	[0.0091-0.0173] unit increase	Illumina [13479295] (imputed)	N
1398	chr12	106661315	106661316	rs2952110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12q23.3	CKAP4	rs2952110-G	0.168578	5E-11		0.01991819	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr12	106661315	106661316	rs2952110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q23.3	CKAP4	rs2952110-G	0.168592	2E-10		0.019224111	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1398	chr12	106684764	106684765	rs6539262	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q23.3	NR	rs6539262-?	NR	4E-6		4.631	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1399	chr12	106696452	106696453	rs11112933	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q23.3	CKAP4	rs11112933-?	NR	3E-6	(CE 20:5)	0.16508667	[0.096-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
1399	chr12	106704973	106704974	rs4964460	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	12q23.3	NR	rs4964460-G	NR	4E-6		0.01487	[0.0085-0.0212] unit increase	Illumina [541493]	N
1399	chr12	106716440	106716441	rs17218455	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q23.3	CKAP4, TCP11L2	rs17218455-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
1399	chr12	106722700	106722701	rs28669886	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q23.3		rs28669886-A	0.3548	8E-9		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1399	chr12	106741138	106741139	rs77541496	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12q23.3	NR	rs77541496-?	NR	3E-6		0.145173	[0.085-0.206] unit increase	NR [13958389] (imputed)	N
1399	chr12	106770402	106770403	rs557236119	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12q23.3		rs557236119-T	0.16743	3E-6		0.043081	[0.025-0.061] unit increase	Affymetrix [15580782] (imputed)	N
1399	chr12	106785553	106785554	rs6539267	22889924	Scharf JM	2012-08-14	Mol Psychiatry	Genome-wide association study of Tourette's syndrome.	Tourette syndrome	778 European ancestry cases, 4,414 European ancestry controls, 242 Ashkenazi Jewish cases, 354 Ashkenazi Jewish controls, 265 French Canadian founder cases, 196 French Canadian founder controls	211 Latin American cases, 285 Latin American controls	12q23.3	POLR3B, TCP11L2, FLJ45508	rs6539267-T	0.69	6E-6		1.27	[NR]	Illumina [484295]	N
1399	chr12	106812901	106812902	rs3851634	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	12q23.3	POLR3B	rs3851634-T	0.7	4E-7		1.15	[1.09-1.22]	Illumina [at least 8427548] (imputed)	N
1399	chr12	106812901	106812902	rs3851634	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	12q23.3	POLR3B	rs3851634-T	0.7	3E-9		1.2345679	[1.15-1.32]	Illumina [at least 8427548] (imputed)	N
1400	chr12	106877800	106877801	rs11113011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q23.3	Intergenic	rs11113011-A	0.6561	2E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1400	chr12	106877800	106877801	rs11113011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q23.3	Intergenic	rs11113011-A	0.6566	4E-11	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1400	chr12	106877800	106877801	rs11113011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q23.3	Intergenic	rs11113011-A	0.658	2E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1400	chr12	106949986	106949987	rs4964469	21084426	Saad M	2010-11-17	Hum Mol Genet	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	12q23.3	intergenic	rs4964469-A	0.37	2E-7		1.16	[1.09-1.22]	Illumina [492929]	N
1400	chr12	106950694	106950695	rs3891355	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	12q23.3	POLR3B, RFX4	rs3891355-?	NR	3E-6	(Sim)			Affymetrix [70897]	N
1401	chr12	106955543	106955544	rs11610873	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	12q23.3	RP11-144F15.1, RFX4, POLR3B, RIC8B	rs11610873-C	NR	5E-6	(sleep efficiency, weekdays)	3.398	[1.94-4.86] unit decrease	Affymetrix [7141204] (imputed)	N
1401	chr12	106960181	106960182	rs10861632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q23.3		rs10861632-A	NR	6E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1401	chr12	106970891	106970892	rs10861634	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs10861634-?	NR	3E-10	(Brain stem)			NR [9227495] (imputed)	N
1401	chr12	106989914	106989915	rs7304278	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q23.3	POLR3B, RFX4	rs7304278-G	0.7173	2E-14		1.0320983		Affymetrix [11880941] (imputed)	N
1401	chr12	106989914	106989915	rs7304278	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q23.3	POLR3B, RFX4	rs7304278-G	0.7173	2E-14		1.0295275		Affymetrix [11880941] (imputed)	N
1401	chr12	106989914	106989915	rs7304278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q23.3		rs7304278-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1401	chr12	106991544	106991545	rs10778495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q23.3	NR2F1, FAM172A, POU5F2	rs10778495-?		2E-15				NR [7428630] (imputed)	N
1401	chr12	107004722	107004723	rs10861637	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q23.3	NR	rs10861637-?		2E-8				NR [7428630] (imputed)	N
1401	chr12	107007115	107007116	rs78445335	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q23.3	RFX4	rs78445335-C	0.0138026362494645	1E-6	(C_Gammaproteobacteria_HB)	1.32076	[0.79-1.85] unit decrease	Illumina [7711310] (imputed)	N
1401	chr12	107012424	107012425	rs10778496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RP11-144F15.1, RFX4	rs10778496-T	NR	2E-10		0.0201184	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1401	chr12	107015550	107015551	rs716446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.3	RP11-144F15.1, RFX4	rs716446-T	NR	2E-10		0.019913	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1401	chr12	107027907	107027908	rs10778497	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q23.3		rs10778497-G	0.25	2E-20		9.28	z score increase	Affymetrix [9061022] (imputed)	N
1401	chr12	107027907	107027908	rs10778497	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q23.3		rs10778497-G	0.25	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
1401	chr12	107027907	107027908	rs10778497	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.3	NR	rs10778497-G	0.2632	1E-17				NR [9056863] (imputed)	N
1401	chr12	107035750	107035751	rs78676546	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs78676546-?	NR	3E-13	(Brain stem)			NR [9227495] (imputed)	N
1401	chr12	107042462	107042463	rs4964183	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q23.3		rs4964183-T	0.24	8E-18		8.61	z score increase	Affymetrix [9061022] (imputed)	N
1401	chr12	107044280	107044281	rs11113071	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs11113071-?	NR	3E-12	(Brain stem)			NR [9227495] (imputed)	N
1401	chr12	107063339	107063340	rs10778498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs10778498-?	NR	1E-14	(Brain stem)			NR [9227495] (imputed)	N
1401	chr12	107071049	107071050	rs78815430	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12q23.3		rs78815430-?	NR	4E-6		0.4961045	[0.29-0.71] unit increase	Illumina [9901720] (imputed)	N
1401	chr12	107071129	107071130	rs10861645	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q23.3	CALCRL, TFPI	rs10861645-?		3E-10				NR [7428630] (imputed)	N
1401	chr12	107071181	107071182	rs10861646	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q23.3	C3orf49, THOC7, ATXN7, PSMD6	rs10861646-?		9E-10				NR [7428630] (imputed)	N
1401	chr12	107077231	107077232	rs1922432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RP11-144F15.1, RFX4, RP11-482D24.2	rs1922432-A	NR	1E-14		0.0229036	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1401	chr12	107077231	107077232	rs1922432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.3	RP11-144F15.1, RFX4, RP11-482D24.2	rs1922432-A	NR	3E-14		0.0224381	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1401	chr12	107081598	107081599	rs4346064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q23.3	NR	rs4346064-A	0.3504	2E-8		0.0115	[0.0074-0.0156] unit increase	NR [~ 27400000] (imputed)	N
1402	chr12	107101684	107101685	rs10161520	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q23.3	RIC8B	rs10161520-C	0.3477	1E-15		0.5592	[0.42-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1402	chr12	107120423	107120424	rs10778504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q23.3	NR	rs10778504-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1402	chr12	107128089	107128090	rs2204886	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q23.3	RP11-144F15.1	rs2204886-T	0.479697	2E-11		0.0127576	[0.009-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1402	chr12	107128089	107128090	rs2204886	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q23.3	RP11-144F15.1	rs2204886-T	0.479625	1E-8		0.0111599	[0.0073-0.015] unit increase	Affymetrix [NR] (imputed)	N
1402	chr12	107139982	107139983	rs7972561	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	12q23.3	NR	rs7972561-A	0.3301	8E-12		6.834	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1402	chr12	107149421	107149422	rs2067615	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q23.3	RFX4	rs2067615-A	0.49	2E-9		0.278	[0.19-0.36] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1402	chr12	107156820	107156820	rs140088379	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs140088379-?	NR	4E-8	(Brain stem)			NR [9227495] (imputed)	N
1402	chr12	107166121	107166122	rs3759310	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q23.3	RIC8B	rs3759310-G	0.36	5E-17		0.56	[0.42-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1402	chr12	107170127	107170128	rs9651957	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	12q23.3	RIC8B	rs9651957-T	0.64	9E-12		0.00611	[0.0044-0.0079] unit increase	Affymetrix [at least 8002429] (imputed)	N
1402	chr12	107174645	107174646	rs10861661	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	12q23.3	RIC8B	rs10861661-C	0.228588699897924	1E-7		0.037486278	unit decrease	Illumina [265780]	N
1402	chr12	107174645	107174646	rs10861661	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	12q23.3		rs10861661-A	0.7629	5E-6		0.0118	[0.0067-0.0169] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1402	chr12	107174645	107174646	rs10861661	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	12q23.3	RIC8B	rs10861661-C	NR	2E-14		0.016748324	[0.012-0.021] unit increase	Illumina [242289]	N
1402	chr12	107174645	107174646	rs10861661	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	12q23.3	NR	rs10861661-C	0.23	8E-7		0.019	unit increase	Illumina [242289]	N
1402	chr12	107174645	107174646	rs10861661	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	12q23.3	RFX4, RIC8B	rs10861661-A	0.2375	2E-7	(Trans-ethnic initial)	0.0227	[0.015-0.031] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1402	chr12	107183588	107183589	rs10861663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RIC8B	rs10861663-A	NR	3E-9		0.0173572	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1402	chr12	107187779	107187780	rs1216006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RIC8B	rs1216006-G	NR	1E-9		0.0171544	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1402	chr12	107187779	107187780	rs1216006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.3	RIC8B	rs1216006-G	NR	1E-9		0.0170552	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1402	chr12	107187779	107187780	rs1216006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q23.3		rs1216006-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1402	chr12	107194132	107194134	rs34879371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q23.3		rs34879371-G	NR	9E-15		0.0181	[0.014-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1402	chr12	107194579	107194580	rs10861666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q23.3	NR	rs10861666-A	NR	3E-9		0.0213	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1402	chr12	107196824	107196825	rs66716938	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q23.3	RIC8B	rs66716938-T	0.63	8E-15		0.0069	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1402	chr12	107198610	107198611	rs12369214	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q23.3	NR	rs12369214-A	0.3915	1E-12		0.0132	[0.0095-0.0169] unit increase	NR [~ 27400000] (imputed)	N
1402	chr12	107198610	107198611	rs12369214	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12q23.3	RIC8B	rs12369214-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
1402	chr12	107199141	107199142	rs11113118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RIC8B	rs11113118-A	NR	4E-8		0.0178203	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
1402	chr12	107201488	107201489	rs76282986	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12q23.3		rs76282986-?	NR	5E-6		0.4628001	[0.27-0.66] unit increase	Illumina [9901720] (imputed)	N
1402	chr12	107205752	107205753	rs3782709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.3	RIC8B	rs3782709-G	NR	3E-10		0.020177	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1402	chr12	107205752	107205753	rs3782709	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.3	RIC8B	rs3782709-A	0.6442	8E-11		0.0128	[0.0089-0.0167] unit increase	Affymetrix [18391927] (imputed)	N
1402	chr12	107206222	107206223	rs755710662	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.3	RIC8B	rs755710662-G	NR	2E-10		0.0229315	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1402	chr12	107206222	107206223	rs755710662	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12q23.3	RIC8B	rs755710662-?	NR	3E-10		0.0195	[0.014-0.025] unit increase	Affymetrix [5701386] (imputed)	N
1403	chr12	107222514	107222515	rs4964491	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Flavonifractor sp900199495 abundance in stool	5,959 Finnish ancestry individuals	NA	12q23.3		rs4964491-A	0.186943	9E-10		0.0624279	[0.042-0.082] unit increase	Illumina [7980478] (imputed)	N
1403	chr12	107228675	107228676	rs7138037	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q23.3	RIC8B	rs7138037-G	0.767114	5E-16		0.0191206	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1403	chr12	107229704	107229705	rs10444533	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	12q23.3	RIC8B	rs10444533-C		4E-6		1.458	[0.84-2.07] unit increase	Illumina [2462046] (imputed)	N
1403	chr12	107259469	107259470	rs7977247	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q23.3	NR	rs7977247-T	0.578252	4E-11		0.0182888	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1403	chr12	107279147	107279148	rs76918979	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	12q23.3		rs76918979-C	0.04	1E-7		0.3	[0.18-0.42] decrease	Illumina [9806907] (imputed)	N
1403	chr12	107288423	107288424	rs61942367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q23.3	RIC8B	rs61942367-A	NR	5E-8		0.0256634	[0.016-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1403	chr12	107297861	107297862	rs6539288	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q23.3	NR	rs6539288-A	0.498	2E-10	(European)	0.0395	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1403	chr12	107302777	107302778	rs1037011	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q23.3	NR	rs1037011-T	0.4792	2E-12		0.0404	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1403	chr12	107305727	107305728	rs7312774	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	12q23.3	C12ORF23, RIC8B	rs7312774-?	0.001859	3E-9		29.83	[5.374-165.6]	Affymetrix [547296]	N
1403	chr12	107319660	107319661	rs10861678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q23.3		rs10861678-A	NR	8E-29		0.0162	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1403	chr12	107319660	107319661	rs10861678	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q23.3	RIC8B, TMEM263	rs10861678-?	NR	8E-12		0.022362776	[0.016-0.029] unit decrease	Illumina [27896057] (imputed)	N
1403	chr12	107322914	107322915	rs10861679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs10861679-?	NR	8E-32				NR [~ 8900000] (imputed)	N
1403	chr12	107325647	107325648	rs1348566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	RPL30P12	rs1348566-T	NR	1E-8		0.0165786	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1403	chr12	107325647	107325648	rs1348566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.3	RPL30P12	rs1348566-T	NR	4E-8		0.0160183	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1403	chr12	107332125	107332126	rs7307895	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q23.3	RIC8B, TMEM263	rs7307895-?		1E-8		0.0235	[0.015-0.032] unit decrease	Illumina [31500000] (imputed)	N
1403	chr12	107337623	107337624	rs13378103	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q23.3		rs13378103-?	NR	7E-10		0.0131705	[0.009-0.0174] unit increase	Affymetrix [20259828] (imputed)	N
1403	chr12	107340093	107340093	rs397814918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q23.3		rs397814918-CTGAG	NR	2E-22		0.0197	[0.016-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1403	chr12	107341663	107341664	rs10778517	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	12q23.3	NR	rs10778517-T	0.5648	4E-10		0.3352	[0.23-0.44] unit increase	Illumina [5932107] (imputed)	N
1403	chr12	107343375	107343376	rs10735418	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	12q23.3	NR	rs10735418-C	0.3722	1E-9		0.1954	[0.13-0.26] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
1403	chr12	107343949	107343950	rs10778518	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	12q23.3	NR	rs10778518-?	NR	2E-11				Affymetrix, Illumina [6211246] (imputed)	N
1403	chr12	107347084	107347085	rs4964506	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12q23.3	RIC8B, TMEM263	rs4964506-A	0.5	6E-18		8.64	z-score increase	Affymetrix [4311822] (imputed)	N
1404	chr12	107350087	107350088	rs2041895	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (low intraocular pressure)	725 European ancestry cases, 11,145 European ancestry controls	363 European ancestry cases	12q23.3		rs2041895-C		8E-8		1.48		Affymetrix, Illumina [6425680] (imputed)	N
1404	chr12	107350166	107350167	rs2041894	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q23.3	TMEM263	rs2041894-A	0.492333	5E-24		0.00232753	[0.0019-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
1404	chr12	107360245	107360246	rs4964511	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q23.3	TMEM263	rs4964511-T	0.491577	1E-11		0.0125798	[0.009-0.0162] unit increase	NR [13737936] (imputed)	N
1404	chr12	107360245	107360246	rs4964511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q23.3		rs4964511-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1404	chr12	107360942	107360943	rs117650853	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	12q23.3	TMEM263	rs117650853-A	0.001153	2E-6		11.06	3.157-38.74	Illumina [164395]	N
1404	chr12	107367224	107367225	rs1053051	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	12q23.3	C12orf23	rs1053051-T	0.52	1E-9		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1404	chr12	107405921	107405922	rs10861694	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q23.3		rs10861694-T	0.5641	3E-10		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1404	chr12	107413964	107413964	rs5800723	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	12q23.3		rs5800723-C	0.534563	2E-8		0.0237897	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1404	chr12	107435404	107435405	rs1017168	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q23.3	NR	rs1017168-A	0.3551	3E-8		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1404	chr12	107435404	107435405	rs1017168	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	12q23.3	CRY1	rs1017168-C	0.6423	1E-13		1.029548		Affymetrix [11880941] (imputed)	N
1404	chr12	107454201	107454202	rs116845892	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	12q23.3	CRY1	rs116845892-?	NR	9E-6		4.436	[NR] z score increase	Illumina [6737359] (imputed)	N
1404	chr12	107469447	107469448	rs12369228	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q23.3	NR	rs12369228-?	NR	3E-8	(Brain stem)			NR [9227495] (imputed)	N
1405	chr12	107538964	107538965	rs7975663	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.3	NR	rs7975663-?	NR	6E-23				Affymetrix [NR]	N
1405	chr12	107557985	107557986	rs28523705	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q23.3	NR	rs28523705-T	0.02613	2E-9	(AMACR)	0.03974	NR unit increase	Illumina [1671387] (imputed)	N
1405	chr12	107606125	107606126	rs192568883	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs192568883-T	1.0	9E-7	(AA)	0.809	unit increase	Illumina [NR] (imputed)	N
1406	chr12	107611049	107611050	rs181697701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs181697701-C	1.0	3E-6	(AA)	0.765	unit increase	Illumina [NR] (imputed)	N
1406	chr12	107620105	107620106	rs184483429	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	12q23.3	RP11-797M17.1, SETP7	rs184483429-?	NR	5E-8			[NR]	NR [NR] (imputed)	N
1406	chr12	107628679	107628680	rs189340018	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs189340018-C	1.0	1E-6	(AA)	0.804	unit increase	Illumina [NR] (imputed)	N
1406	chr12	107648404	107648405	rs192256367	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs192256367-T	1.0	1E-6	(AA)	0.801	unit increase	Illumina [NR] (imputed)	N
1406	chr12	107652530	107652531	rs78971134	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	12q23.3	BTBD11	rs78971134-A	NR	2E-8		1.3333333	[1.2-1.47]	Illumina [~ 6000000] (imputed)	N
1406	chr12	107667801	107667802	rs182328274	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs182328274-T	1.0	1E-6	(AA)	0.801	unit increase	Illumina [NR] (imputed)	N
1406	chr12	107701485	107701486	rs189419463	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs189419463-C	1.0	3E-6	(AA)	5.813	NR unit increase	Illumina [NR] (imputed)	N
1406	chr12	107704704	107704705	rs1820460	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q23.3	BTBD11	rs1820460-?	0.2788	8E-6	(IED)			Illumina [475971]	N
1406	chr12	107713695	107713696	rs111260184	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.3	NR	rs111260184-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1406	chr12	107713695	107713696	rs111260184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.3		rs111260184-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1406	chr12	107730499	107730500	rs35565533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.3	NR	rs35565533-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1407	chr12	107744134	107744135	rs142551805	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	12q23.3	BTBD11	rs142551805-A	0.04	1E-7	(African American)	0.77	[0.5-1.04] unit increase	Illumina [up to 13042663] (imputed)	N
1407	chr12	107752076	107752077	rs10778546	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q23.3	BTBD11	rs10778546-A	0.611	9E-6		0.029	[0.015-0.043] unit increase	Affymetrix [7947838] (imputed)	N
1407	chr12	107776692	107776693	rs11113296	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.3	BTBD11	rs11113296-?		2E-6				Illumina [4322238] (imputed)	N
1407	chr12	107801400	107801401	rs10778560	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	12q23.3	BTBD11	rs10778560-C	0.07	2E-6	(American Indian, dominant )	2.11	[1.56-2.86]	Affymetrix [NR]	N
1407	chr12	107805818	107805819	rs114871691	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	12q23.3	BTBD11	rs114871691-A	0.95	2E-7	(BDRPRED, AA)	4.116	[2.57-5.66] unit increase	Illumina [NR] (imputed)	N
1407	chr12	107805818	107805819	rs114871691	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	12q23.3	BTBD11	rs114871691-A	0.95	1E-7	(BDRABS, AA)	0.114	[0.075-0.153] unit increase	Illumina [NR] (imputed)	N
1407	chr12	107822992	107822993	rs17039266	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q23.3	NR	rs17039266-?	NR	7E-7				Affymetrix [NR]	N
1407	chr12	107842205	107842206	rs10746091	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	12q23.3	NR	rs10746091-A	0.2728	1E-6		0.1618	[0.096-0.228] unit decrease	Illumina [10677593] (imputed)	N
1408	chr12	107976607	107976608	rs35189640	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	12q23.3		rs35189640-T	NR	8E-8		1.7894		Illumina [up to 7574753] (imputed)	N
1408	chr12	107976607	107976608	rs35189640	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	12q23.3		rs35189640-T	NR	1E-9		2.75		Illumina [7574753] (imputed)	N
1408	chr12	107976607	107976608	rs35189640	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	12q23.3	BTBD11	rs35189640-T	0.0175638236703023	2E-6		1.7533		Illumina [7574753] (imputed)	N
1409	chr12	108037923	108037924	rs57143981	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	12q23.3	NR	rs57143981-?		2E-6		1.98	[1.50-2.62]	Illumina [NR]	N
1409	chr12	108041672	108041673	rs78011072	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	12q23.3	BTBD11	rs78011072-G	0.011	4E-7		0.909	[0.56-1.26] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1409	chr12	108048071	108048072	rs28548659	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		12q23.3	BTBD11	rs28548659-?		3E-6				Affymetrix [7000000] (imputed)	N
1409	chr12	108059107	108059108	rs12424620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q23.3		rs12424620-A	0.379221	4E-9		0.013453215	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1409	chr12	108061588	108061589	rs139680557	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q23.3	Intergenic	rs139680557-T	0.998	4E-6	(AA)	1.44	NR unit increase	Illumina [NR] (imputed)	N
1409	chr12	108087903	108087904	rs10778569	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology and risky substance use	604 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	12q23.3		rs10778569-G	0.3315	5E-6		0.68	[0.57-0.81]	Illumina [248101]	N
1409	chr12	108090517	108090518	rs2287214	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q23.3		rs2287214-G	0.4	7E-14				NR [NR] (imputed)	N
1409	chr12	108090517	108090518	rs2287214	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q23.3		rs2287214-G	0.4	2E-16		0.012	% increase	NR [NR] (imputed)	N
1409	chr12	108094979	108094980	rs12227529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs12227529-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1409	chr12	108127164	108127167	rs35721831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q23.3		rs35721831-C	NR	1E-12		0.0138	[0.01-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1410	chr12	108144090	108144091	rs10861775	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q23.3	NR	rs10861775-A	0.333865	3E-15		0.0257944	[0.019-0.032] unit increase	NR [19129689] (imputed)	N
1410	chr12	108163423	108163424	rs10778576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q23.3		rs10778576-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1410	chr12	108200595	108200596	rs7308116	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	12q23.3	LOC101929127, ASCL4	rs7308116-A	0.64	2E-6		1.61		Affymetrix [at least 730985] (imputed)	N
1410	chr12	108262224	108262225	rs138087579	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	12q23.3	NR	rs138087579-T	0.1479	2E-6		0.2069	[0.12-0.29] unit increase	Illumina [10677593] (imputed)	N
1411	chr12	108278652	108278653	rs184139486	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12q23.3	NR	rs184139486-A	0.9694	6E-7		0.1958	[0.12-0.27] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1411	chr12	108278652	108278653	rs184139486	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	12q23.3	NR	rs184139486-A	0.9694	7E-7		0.195	[0.12-0.27] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1411	chr12	108294539	108294540	rs35046541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q23.3		rs35046541-A	NR	2E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1411	chr12	108323925	108323926	rs4402351	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	12q23.3	LOC728739, ASCL4, PRDM4, WSCD2	rs4402351-A	NR	3E-8		0.978	[0.63-1.33] unit increase	Affymetrix [14661600] (imputed)	N
1411	chr12	108332993	108332994	rs1895941	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q23.3	NA	rs1895941-A	0.2552	2E-15		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1411	chr12	108334476	108334477	rs60222088	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	12q23.3	ASCL4, PRDM4	rs60222088-C		1E-14		0.0092	[0.0068-0.0116] unit increase	Affymetrix [13304133] (imputed)	N
1411	chr12	108353701	108353702	rs6539398	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q23.3		rs6539398-C	0.238	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1411	chr12	108393844	108393845	rs12316047	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q23.3	NA	rs12316047-A	0.2392	1E-17		0.0174	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1412	chr12	108412849	108412850	rs74710200	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q23.3	NR	rs74710200-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1412	chr12	108417779	108417780	rs61217499	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q23.3	WSCD2	rs61217499-G	0.780037	2E-14		0.0127589	[0.0095-0.016] unit increase	Affymetrix [12370749]	N
1412	chr12	108422856	108422857	rs749953	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q23.3	NR	rs749953-T	0.2294	3E-9		0.0174893	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1412	chr12	108436395	108436396	rs10861861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q23.3		rs10861861-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1412	chr12	108455827	108455828	rs10507223	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q23.3	NA	rs10507223-C	0.7667	5E-10		0.0134	[0.0091-0.0177] unit increase	NR [~ 27400000] (imputed)	N
1412	chr12	108474630	108474631	rs11608785	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q23.3	NR	rs11608785-?		1E-6				Illumina [4322238] (imputed)	N
1412	chr12	108502141	108502142	rs7976210	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q23.3	WSCD2	rs7976210-G	NR	2E-6		0.032893334	[0.019-0.047] unit decrease	Illumina [> 6200000] (imputed)	N
1413	chr12	108535857	108535858	rs338168	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q23.3		rs338168-?	NR	2E-8				NR [9705931] (imputed)	N
1413	chr12	108547386	108547387	rs181947843	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	12q23.3	CORO1C, ASCL4, ISCU, LOC728739, FICD, PRDM4, PWP1, CMKLR1, SART3, BTBD11, SELPLG, TMEM119, WSCD2	rs181947843-A	0.0034	5E-6		2.17	[1.32-3.58]	Illumina [7300000] (imputed)	N
1413	chr12	108557385	108557386	rs2374977	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q23.3	NR	rs2374977-G	0.25	1E-8				NR [9056863] (imputed)	N
1413	chr12	108582297	108582298	rs17040284	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q23.3	NR	rs17040284-G	0.722535	2E-8		0.0118909	[0.0077-0.0161] unit decrease	NR [NR]	N
1413	chr12	108594068	108594069	rs4964656	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q23.3	NR	rs4964656-C	0.3025	5E-16		0.0159	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1413	chr12	108594068	108594069	rs4964656	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q23.3	NA	rs4964656-C	0.3026	2E-20		0.0181	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1413	chr12	108594068	108594069	rs4964656	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q23.3	NR	rs4964656-C	0.3026	2E-20		0.0181	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1413	chr12	108596398	108596399	rs7971456	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q23.3	WSCD2	rs7971456-C	0.486	6E-6		1.0526427		NR [9372253] (imputed)	N
1413	chr12	108598935	108598936	rs751796	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty	1,096 European ancestry cases, 2,418 European ancestry controls	NA	12q23.3	NR	rs751796-C	0.05	4E-6		1.78	[1.39-2.28]	Illumina [5411522] (imputed)	N
1413	chr12	108602969	108602970	rs7313402	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	12q23.3	WSCD2	rs7313402-?	NR	8E-6	(Anxious)	1.13	[NR] unit increase	Affymetrix [703012]	N
1413	chr12	108609633	108609634	rs10861879	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q23.3	NR	rs10861879-?	NR	2E-10		1.05929	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1413	chr12	108609633	108609634	rs10861879	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	12q23.3	NR	rs10861879-?	NR	1E-8		1.08		Affymetrix, Illumina [9938587] (imputed)	N
1413	chr12	108609633	108609634	rs10861879	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q23.3	NR	rs10861879-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1413	chr12	108609633	108609634	rs10861879	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q23.3	NR	rs10861879-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1413	chr12	108611473	108611474	rs10861880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q23.3		rs10861880-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1413	chr12	108613150	108613151	rs11113776	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	12q23.3	NR	rs11113776-G	0.4591	6E-9		0.0507	[0.034-0.068] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1413	chr12	108613150	108613151	rs11113776	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	12q23.3	WSCD2	rs11113776-G	0.46	1E-8		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q23.3		rs3764002-T	NR	4E-8		0.0434	[0.028-0.059] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q23.3	WSCD2	rs3764002-T	NR	5E-9		0.0187279	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q23.3	WSCD2	rs3764002-T	NR	6E-9		0.0186847	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q23.3	WSCD2	rs3764002-T	NR	6E-9		0.0188259	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q23.3	WSCD2	rs3764002-T	NR	8E-11		0.0210915	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	12q23.3		rs3764002-C	0.74	1E-6		0.011	mmol/L increase	NR [NR] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	12q23.3		rs3764002-C	0.74	2E-7		0.011	nmol/L decrease	NR [NR] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q23.3		rs3764002-C	0.74	1E-18				NR [NR] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q23.3		rs3764002-C	0.74	2E-29		0.019	% increase	NR [NR] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	12q23.3		rs3764002-?	NR	6E-11		0.0155	NR unit increase	NR [4548414] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	12q23.3		rs3764002-?	NR	3E-10		0.0217	NR unit increase	NR [4428082] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q23.3	WSCD2	rs3764002-T	0.2617	4E-39		0.028	[0.024-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12q23.3	WSCD2	rs3764002-T	0.262	1E-23		0.03	[0.024-0.036] unit increase	Affymetrix [18391927] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12q23.3	WSCD2	rs3764002-T	0.262	7E-19		0.03	[0.024-0.036] unit increase	Affymetrix [18391927] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q23.3	NR	rs3764002-C	0.7412	3E-14		0.0396	[0.029-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q23.3	NR	rs3764002-T	0.262461	3E-21		0.0727961	[0.058-0.088] unit increase	Affymetrix [17914406] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q23.3	NR	rs3764002-T	0.261	2E-9		0.016972736	[0.011-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	12q23.3	WSCD2	rs3764002-C	NR	2E-10		0.0096865	[0.0067-0.0127] unit increase	Affymetrix [18485882] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	12q23.3	WSCD2	rs3764002-C	0.729	9E-7		0.0165	[0.0098-0.0232] unit increase	Affymetrix, Illumina [at least 228985]	N
1413	chr12	108618629	108618630	rs3764002	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	12q23.3	WSCD2	rs3764002-C	0.734	8E-6		0.0162	[0.0091-0.0233] unit increase	Affymetrix, Illumina [at least 228985]	N
1413	chr12	108618629	108618630	rs3764002	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q23.3	WSCD2	rs3764002-C	0.7368	1E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [at least 228985]	N
1413	chr12	108618629	108618630	rs3764002	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q23.3	WSCD2	rs3764002-C	0.7363	9E-9		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [at least 228985]	N
1413	chr12	108618629	108618630	rs3764002	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	12q23.3	CMKLR1	rs3764002-T	0.2616	7E-9		0.016980601	[0.011-0.023] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q23.3	WSCD2	rs3764002-T	0.261	2E-17		0.0115	[0.009-0.014] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q23.3		rs3764002-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q23.3		rs3764002-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q23.3	NR	rs3764002-C	0.73	2E-18		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q23.3	NR	rs3764002-C	0.73	5E-8				Affymetrix [2446094] (imputed)	N
1413	chr12	108618629	108618630	rs3764002	30389748	Emdin CA	2018-11-02	Diabetes	DNA Sequence Variation in ACVR1C Encoding the Activin Receptor-Like Kinase 7 Influences Body Fat Distribution and Protects Against Type 2 Diabetes.	Waist-to-hip ratio adjusted for BMI	335,660 European ancestry individuals, 69,909 individuals	210,088 European ancestry individuals, 14,371 individuals	12q23.3	WSCD2	rs3764002-T	NR	5E-11		0.017	[0.011-0.023] unit decrease	Illumina [614042]	N
1413	chr12	108618629	108618630	rs3764002	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q23.3	WSCD2	rs3764002-C	0.726	6E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1413	chr12	108618629	108618630	rs3764002	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q23.3	WSCD2	rs3764002-C	0.719	1E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1413	chr12	108618629	108618630	rs3764002	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q23.3	WSCD2	rs3764002-C	0.726	9E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1413	chr12	108618629	108618630	rs3764002	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q23.3	WSCD2	rs3764002-C	0.719	3E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1413	chr12	108628066	108628067	rs4964665	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q23.3		rs4964665-C	0.550003804	1E-9		0.9497181	[0.934114756-0.965582058]	Illumina [8919992] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q23.3		rs1426371-A	0.494192822	1E-8		0.053099744	[0.035-0.071] unit decrease	Illumina [13429769] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q23.3		rs1426371-A	NR	2E-13		0.0486	[0.036-0.062] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q23.3		rs1426371-A	NR	5E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	12q23.3		rs1426371-A	0.2707	9E-10		0.94980365	[0.93429439-0.965570363]	Affymetrix, Illumina [NR] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q23.3	NR	rs1426371-G	0.692	1E-21		0.0429	[0.034-0.052] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q23.3	WSCD2	rs1426371-G	0.491	8E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q23.3	NR	rs1426371-A	0.258646	4E-11		0.0759176	[0.054-0.098] unit increase	Affymetrix [21375087] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	12q23.3	NR	rs1426371-A	0.259	6E-9		0.00886039	[0.0059-0.0119] unit decrease	NR [~ 9732723] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.3	NR	rs1426371-?	NR	5E-8	(female)	0.21415	[0.14-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.3	NR	rs1426371-?	NR	2E-13		0.17762	[0.13-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q23.3	NR	rs1426371-?	NR	1E-6	(male)	0.1457	[0.087-0.204] unit decrease	Affymetrix [7794483] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q23.3	WSCD2	rs1426371-G	0.7389	8E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	12q23.3	NR	rs1426371-A	NR	2E-8		0.01565	[0.01-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1413	chr12	108629779	108629780	rs1426371	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Extraversion	122,886 European ancestry individuals	46,621 European ancestry individuals	12q23.3	WSCD2	rs1426371-A	0.28	1E-14		0.023	[0.011-0.035] unit decrease GPC-2 Discovery cohort	Affymetrix, Illumina [6343667] (imputed)	N
1414	chr12	108699031	108699032	rs1878022	21483023	Wu X	2011-04-11	J Natl Cancer Inst	Genome-wide association study of survival in non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	327 European ancestry individuals	735 European ancestry individuals	12q23.3	CMKLR1	rs1878022-?	NR	5E-7		1.33	[1.19-1.48]	Illumina [307260]	N
1414	chr12	108711078	108711079	rs10778621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q23.3		rs10778621-C	NR	3E-31		0.0256	[0.021-0.03] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1414	chr12	108711078	108711079	rs10778621	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q23.3		rs10778621-T	0.371	4E-16				Affymetrix [10369434] (imputed)	N
1414	chr12	108717928	108717929	rs11113818	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	12q23.3	STAB2, FICD, CHST11, CMKLR1, BTBD11, CORO1C, SSH, C12orf75, POLR3B, RFX4, NUAK1	rs11113818-T	NR	4E-6	(ParVAS)	1.16	[0.67-1.65] unit increase	Illumina [586062]	N
1414	chr12	108718474	108718475	rs17322313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q23.3		rs17322313-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1414	chr12	108720445	108720446	rs4964677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12q23.3		rs4964677-T	0.611	1E-17				Affymetrix [10369434] (imputed)	N
1414	chr12	108720445	108720446	rs4964677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q23.3	CMKLR1	rs4964677-C	0.388773	1E-40		0.030486446	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1414	chr12	108720445	108720446	rs4964677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q23.3	CMKLR1	rs4964677-C	0.388745	5E-36		0.028547844	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1414	chr12	108720445	108720446	rs4964677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q23.3	CMKLR1	rs4964677-C	0.3896	6E-16		0.02958099	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr12	108720445	108720446	rs4964677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q23.3	CMKLR1	rs4964677-C	0.3897	6E-12		0.02524083	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1414	chr12	108720575	108720576	rs10778623	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q23.3	NR	rs10778623-T	0.427514	2E-10		0.0198942	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1414	chr12	108721635	108721636	rs12312487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q23.3	NR	rs12312487-A	0.35238	5E-48				Affymetrix, Illumina [23467995] (imputed)	N
1414	chr12	108721635	108721636	rs12312487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q23.3	NR	rs12312487-A	0.385774	1E-48		0.028446	[0.025-0.032] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1414	chr12	108721635	108721636	rs12312487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q23.3	CMKLR1	rs12312487-A	0.3868	2E-17		0.03115868	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1414	chr12	108742819	108742820	rs17040430	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder	836 European ancestry cases, 2,093 European ancestry controls	NA	12q23.3	CMKLR1	rs17040430-T	NR	9E-7		1.89	[NR]	Affymetrix [745006]	N
1414	chr12	108743597	108743598	rs11113832	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	12q23.3	CMKLR1	rs11113832-?	NR	2E-6	(Chemerin)			Illumina [4020654] (imputed)	N
1414	chr12	108762905	108762906	rs76444204	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q23.3	NR	rs76444204-?	NR	4E-8				Illumina [7760689] (imputed)	N
1414	chr12	108767332	108767333	rs10861905	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	12q23.3	CMKLR1	rs10861905-?	0.01	8E-7		33.95	[NR]	Affymetrix [512497]	N
1414	chr12	108781543	108781544	rs803567	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q23.3	NR	rs803567-A	0.494	5E-8		0.00590019	[0.0038-0.008] unit increase	NR [9732723] (imputed)	N
1415	chr12	108841862	108841863	rs11113894	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q23.3	FICD	rs11113894-A	0.397	2E-6	(TC )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1415	chr12	108842375	108842376	rs66478310	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	12q23.3	LOC102723562	rs66478310-?		5E-6				Illumina [5970354] (imputed)	N
1415	chr12	108877540	108877541	rs918304	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs918304-C	0.00963820126262628	9E-6	(IGP13)	1.5827	[0.88-2.28] unit decrease	Illumina [~ 2500000] (imputed)	N
1415	chr12	108877540	108877541	rs918304	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q23.3	NR	rs918304-C	0.00963820126262628	8E-6	(IGP53)	1.5994	[0.9-2.3] unit decrease	Illumina [~ 2500000] (imputed)	N
1415	chr12	108892787	108892788	rs75177500	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	12q23.3	NR	rs75177500-?	NR	1E-5				NR [18617478] (imputed)	N
1415	chr12	108894908	108894909	rs7963027	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	12q23.3	NA	rs7963027-C	0.6118	7E-7		0.3029	[0.1874-0.4894]	Illumina [243345]	N
1416	chr12	108978413	108978414	rs73191218	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	12q23.3	TMM119	rs73191218-C	0.924	1E-10		0.155	[0.11-0.2] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1416	chr12	108979234	108979235	rs11114001	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	12q23.3	TMEM119	rs11114001-C	0.19	7E-10		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1416	chr12	108979989	108979990	rs7315286	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q23.3	TMEM119	rs7315286-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
1416	chr12	108980535	108980536	rs7316170	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q23.3	ISCU, TMEM119	rs7316170-C	0.9223	5E-11		0.1747	[0.12-0.23] unit increase	Affymetrix [~ 11900000] (imputed)	N
1416	chr12	108982741	108982742	rs12422878	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	12q23.3	NR	rs12422878-A		4E-8		0.15	[0.091-0.209] unit increase	NR [NR]	N
1416	chr12	108985975	108985976	rs112073168	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q23.3	TMEM119	rs112073168-G	0.973181	1E-10		0.0364832	[0.025-0.048] unit increase	NR [13737936] (imputed)	N
1416	chr12	108985975	108985976	rs112073168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q23.3		rs112073168-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1416	chr12	108985975	108985976	rs112073168	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q23.3		rs112073168-?	NR	2E-10		0.038077	[0.026-0.051] unit increase	Affymetrix [20259828] (imputed)	N
1416	chr12	108986111	108986112	rs10861953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q23.3	NR	rs10861953-C	NR	2E-12		0.0226	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr12	108987229	108987230	rs74481774	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	12q23.3	TMEM119	rs74481774-?	NR	2E-7		0.25	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1416	chr12	108990052	108990053	rs73191227	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	12q23.3	TMEM119	rs73191227-?	NR	4E-10		0.1702	[0.12-0.22] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1416	chr12	109005083	109005084	rs11114010	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	12q24.11		rs11114010-A	0.98	2E-544		1.6516	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1416	chr12	109013955	109013956	rs73191242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELPLG	5,356 Icelandic ancestry individuals	NA	12q24.11		rs73191242-A	0.2012	3E-20		0.211	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1416	chr12	109013955	109013956	rs73191242	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.11	SELPLG	rs73191242-G	0.7953125	2E-12	(SELPLG, 11266_8_3)	0.20893112	[0.15-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1416	chr12	109025426	109025427	rs8179116	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	12q24.11	SELPLG	rs8179116-A	0.021	3E-6		0.23	[NR] unit increase	Illumina [948658]	N
1416	chr12	109029332	109029333	rs7300422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.11		rs7300422-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1416	chr12	109032143	109032144	rs7298509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.11	RP11-689B22.2	rs7298509-A	0.450987	3E-10		0.014274301	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr12	109032143	109032144	rs7298509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.11	RP11-689B22.2	rs7298509-A	0.450981	8E-10		0.013856421	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr12	109032143	109032144	rs7298509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.11	RP11-689B22.2	rs7298509-A	0.450976	2E-11		0.015114642	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr12	109034363	109034364	rs11114018	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC007569.1	rs11114018-?	NR	2E-8		0.39	[NR] unit increase	Affymetrix [NR] (imputed)	N
1416	chr12	109036358	109036359	rs1558801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.11	CORO1C, RP11-689B22.2	rs1558801-C	0.390936	5E-9		0.013307622	[0.0088-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr12	109037788	109037789	rs10861955	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.11		rs10861955-G	0.48	3E-15		7.9	z score increase	Affymetrix [9061022] (imputed)	N
1416	chr12	109037788	109037789	rs10861955	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.11	NR	rs10861955-G	0.4754	1E-14				NR [9056863] (imputed)	N
1416	chr12	109039793	109039794	rs2111212	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.11		rs2111212-A	0.48	1E-32		11.89	z score increase	Affymetrix [9061022] (imputed)	N
1417	chr12	109052329	109052330	rs6539450	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.11		rs6539450-G	0.45	1E-19		9.08	z score increase	Affymetrix [9061022] (imputed)	N
1417	chr12	109052329	109052330	rs6539450	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.11	NR	rs6539450-G	0.4483	1E-13				NR [9056863] (imputed)	N
1417	chr12	109056376	109056377	rs10861957	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q24.11	SELPLG, CORO1C, SSH1, DAO	rs10861957-?		6E-13				NR [7428630] (imputed)	N
1417	chr12	109061105	109061106	rs750134	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	12q24.11	CORO1C	rs750134-T	NR	3E-7		1.5873016	[1.08-2.33]	Affymetrix [~ 8000000] (imputed)	N
1417	chr12	109082464	109082465	rs10778653	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 196)	19,670 European ancestry individuals	NA	12q24.11		rs10778653-?	NR	3E-8				NR [9705931] (imputed)	N
1417	chr12	109082500	109082501	rs147952217	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CORO1C	rs147952217-?	NR	5E-9		0.35	[NR] unit increase	Affymetrix [NR] (imputed)	N
1417	chr12	109095136	109095137	rs3741782	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and LDL cholesterol levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	12q24.11	CORO1C	rs3741782-A	0.69	3E-9				NR [NR]	N
1417	chr12	109097554	109097554	rs113199104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.11	CORO1C	rs113199104-CCCTGGA	0.500558	1E-10		0.014713138	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1417	chr12	109103672	109103673	rs4964273	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.11	Intergenic	rs4964273-T	0.4879	4E-8	(MTAG)	0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1417	chr12	109103672	109103673	rs4964273	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.11	NR	rs4964273-?	NR	3E-7		5.128	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1417	chr12	109124713	109124714	rs11114042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q24.11		rs11114042-G	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1417	chr12	109124713	109124714	rs11114042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.11	NR	rs11114042-G	NR	5E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1417	chr12	109124713	109124714	rs11114042	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	12q24.11	CRMP1	rs11114042-?		2E-9				NR [7428630] (imputed)	N
1417	chr12	109128661	109128662	rs7975687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.11	NR	rs7975687-T	0.482267	4E-33				Affymetrix, Illumina [17210439] (imputed)	N
1417	chr12	109128661	109128662	rs7975687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.11	NR	rs7975687-T	0.494039	6E-36		0.023589	[0.02-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1417	chr12	109137725	109137726	rs7968419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11		rs7968419-C	NR	7E-6		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1417	chr12	109137725	109137726	rs7968419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11		rs7968419-C	NR	2E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1417	chr12	109137725	109137726	rs7968419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7968419-C	NR	3E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1417	chr12	109137725	109137726	rs7968419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11		rs7968419-C	NR	8E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1417	chr12	109137725	109137726	rs7968419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7968419-C	NR	5E-9		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1417	chr12	109171696	109171697	rs4964756	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.11	SSH1	rs4964756-T	0.695188	2E-34		0.00673863	[0.0056-0.0078] unit increase	Affymetrix [13995440] (imputed)	N
1417	chr12	109180114	109180115	rs78866567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.11	SSH1	rs78866567-T	0.0671850000000001	7E-13		0.03217919	[0.023-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1418	chr12	109203810	109203811	rs4964759	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	12q24.11	Intergenic	rs4964759-?		9E-6		1.398797	[NR]	Affymetrix [492217] (imputed)	N
1418	chr12	109250355	109250356	rs987044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q24.11	SSH1	rs987044-G	0.423	1E-11		0.02466718	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1418	chr12	109258396	109258397	rs6539457	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.11	NR	rs6539457-?	NR	7E-6		4.491	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1418	chr12	109267208	109267209	rs4246268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.11	DAO	rs4246268-A	0.340252	7E-28		0.026253559	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chr12	109278746	109278747	rs2111902	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (mean eye scanning length)	128 Han Chinese ancestry cases	NA	12q24.11	NR	rs2111902-?		2E-7		4.428	[2.84-6.02] unit increase	Illumina [498648]	N
1418	chr12	109289346	109289347	rs111173935	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	12q24.11	DAO	rs111173935-T	0.98	8E-6		2.0414	[1.15-2.94] unit increase	Illumina [9520174] (imputed)	N
1418	chr12	109312211	109312212	rs7955796	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q24.11	NR	rs7955796-?	NR	9E-6		920.64026	NR unit decrease	Illumina [2379855]	N
1419	chr12	109333301	109333302	rs34176300	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12q24.11	Intergenic	rs34176300-?		7E-6		1.26	[1.14-1.40]	Illumina [7645193] (imputed)	N
1420	chr12	109475011	109475012	rs4388979	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	12q24.11	NR	rs4388979-G	0.3767	3E-13		0.0190599	[0.014-0.024] unit increase	Affymetrix [3505788] (imputed)	N
1420	chr12	109475011	109475012	rs4388979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.11	USP30	rs4388979-T	0.5834	6E-40		0.04919149	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1420	chr12	109475011	109475012	rs4388979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.11	USP30	rs4388979-T	0.5834	7E-32		0.0435281	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1420	chr12	109490295	109490296	rs12426673	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12q24.11	NR	rs12426673-T	0.547524	4E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix [23037915] (imputed)	N
1420	chr12	109491467	109491468	rs3742028	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q24.11		rs3742028-G	0.418	1E-18				Affymetrix [10369434] (imputed)	N
1420	chr12	109491467	109491468	rs3742028	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.11		rs3742028-G	0.418	4E-42				Affymetrix [10369434] (imputed)	N
1420	chr12	109491467	109491468	rs3742028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.11	USP30, USP30-AS1	rs3742028-A	0.582262	5E-120		0.0528166	[0.048-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1420	chr12	109491467	109491468	rs3742028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.11	USP30, USP30-AS1	rs3742028-A	0.582271	1E-92		0.04634078	[0.042-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1421	chr12	109645815	109645816	rs117960705	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Invasive cervical cancer	764 European ancestry cases, 145,545 European ancestry controls	NA	12q24.11	ACACB	rs117960705-?	NR	3E-9		2.41	[1.81-3.23]	Affymetrix [9600464] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998218	2E-12		0.333698	[0.24-0.43] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998218	1E-8		0.261129	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-11		0.308687	[0.22-0.4] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-11		0.309953	[0.22-0.4] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-9		0.275016	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-10		0.299804	[0.21-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	1E-8		0.266922	[0.18-0.36] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-12		0.332851	[0.24-0.43] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-9		0.28261	[0.19-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	9E-9		0.271583	[0.18-0.36] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-10		0.303638	[0.21-0.4] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	6E-9		0.273807	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	5E-10		0.291789	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	5E-10		0.293845	[0.2-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-9		0.278266	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-10		0.307439	[0.21-0.4] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	5E-9		0.283175	[0.19-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	6E-10		0.291605	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	6E-10		0.296721	[0.2-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998218	3E-10		0.297385	[0.2-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998217	4E-10		0.283994	[0.2-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998217	4E-9		0.275191	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998218	5E-8		0.259358	[0.17-0.35] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-9		0.280445	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-10		0.297426	[0.21-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	1E-9		0.294689	[0.2-0.39] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998217	1E-8		0.275031	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	4E-8		0.255247	[0.16-0.35] unit decrease	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	8E-9		0.280259	[0.19-0.38] unit decrease	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	9E-10		0.290043	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	7E-10		0.29149	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	4E-9		0.277233	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	9E-9		0.278864	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-9		0.280746	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	7E-11		0.313626	[0.22-0.41] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	7E-10		0.290758	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	1E-8		0.26655	[0.17-0.36] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	8E-9		0.280012	[0.18-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	4E-10		0.295503	[0.2-0.39] unit decrease	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	5E-9		0.281085	[0.19-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	1E-10		0.310808	[0.22-0.41] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	9E-9		0.271154	[0.18-0.36] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	4E-10		0.290036	[0.2-0.38] unit decrease	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	1E-9		0.288908	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	2E-10		0.304373	[0.21-0.4] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs149793040-A	0.998219	3E-9		0.278663	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q24.11		rs149793040-G	NR	1E-23		0.2632	[0.21-0.31] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	7E-25		0.253482	[0.2-0.3] unit decrease	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	8E-26		0.242687	[0.2-0.29] unit decrease	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	1E-8		0.135185	[0.086-0.184] unit decrease	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	2E-9		0.152444	[0.1-0.2] unit increase	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	6E-11		0.158001	[0.11-0.21] unit increase	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	8E-9		0.14738	[0.097-0.198] unit decrease	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	12q24.11		rs149793040-?	NR	3E-9		0.150203	[0.099-0.201] unit increase	NR [9800000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q24.11	ACACB	rs149793040-A	0.998107	9E-28		0.0286318	[0.023-0.034] unit increase	Affymetrix [13995440] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	9E-24		0.2786	[0.22-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	2E-23		0.2765	[0.22-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	2E-9		0.1658	[0.11-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	2E-13		0.2126	[0.16-0.27] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	7E-12		0.1901	[0.14-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.11	NR	rs149793040-G	NR	1E-12		0.2052	[0.15-0.26] unit increase	Affymetrix [9000000] (imputed)	N
1421	chr12	109661671	109661672	rs149793040	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.11	ACACB	rs149793040-A	0.9987	3E-8		0.2148	[0.14-0.29] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1421	chr12	109690841	109690842	rs17848833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	12q24.11		rs17848833-T	0.00327	2E-18		0.322265	[0.25-0.39] unit decrease	Illumina [13471903] (imputed)	N
1421	chr12	109699615	109699616	rs9788220	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q24.11	ACACB	rs9788220-T	0.185283	1E-9		0.0156602	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1422	chr12	109770604	109770605	rs118070531	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-776 sp000438195 abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.11		rs118070531-C	0.0220775	3E-8		0.233524	[0.15-0.32] unit increase	Illumina [7980478] (imputed)	N
1422	chr12	109770604	109770605	rs118070531	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-776 abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.11		rs118070531-C	0.0220775	3E-8		0.259446	[0.17-0.35] unit increase	Illumina [7980478] (imputed)	N
1422	chr12	109804221	109804222	rs7305165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7305165-A	0.4983	9E-9	(MMAB)	0.01545	NR unit decrease	Illumina [1671387] (imputed)	N
1422	chr12	109826633	109826634	rs11611277	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs11611277-A	0.23	4E-9	(MMAB)	0.01887	NR unit decrease	Illumina [1671387] (imputed)	N
1422	chr12	109828038	109828039	rs11066471	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs11066471-C	0.3153	6E-9	(MMAB)	0.01653	NR unit decrease	Illumina [1671387] (imputed)	N
1422	chr12	109832544	109832545	rs7300290	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs7300290-T	NR	5E-8		5.454	z score decrease	Affymetrix [10847151] (imputed)	N
1423	chr12	109840939	109840940	rs9943753	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.11	NA	rs9943753-G	0.6318	4E-8	(Female)	1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109840939	109840940	rs9943753	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	12q24.11	UBE3B, MVK, MMAB, MYO1H, KCTD10	rs9943753-G	0.63	3E-6		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1423	chr12	109842111	109842112	rs145781730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.11		rs145781730-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1423	chr12	109848902	109848903	rs6606710	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	12q24.11	MYO1H	rs6606710-T	0.4245	1E-6		0.011488617	[0.0061-0.0168] unit decrease	NR [9417325] (imputed)	N
1423	chr12	109848902	109848903	rs6606710	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	12q24.11	MYO1H	rs6606710-T	NR	5E-9		0.010185	[0.0068-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
1423	chr12	109848902	109848903	rs6606710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q24.11	NR	rs6606710-C	0.405363443232167	7E-10		0.012666779	[0.0086-0.0167] unit increase	NR [NR]	N
1423	chr12	109848902	109848903	rs6606710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q24.11		rs6606710-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1423	chr12	109848902	109848903	rs6606710	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	12q24.11	MYO1H	rs6606710-C	NR	8E-9		0.0084	[0.0055-0.0113] unit increase	Affymetrix [9304965] (imputed)	N
1423	chr12	109849534	109849535	rs2196612	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs2196612-G	0.4286	2E-16	(MMAB)	0.02098	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109849539	109849540	rs7316486	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7316486-G	0.3746	8E-12	(MMAB)	0.01779	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109853305	109853306	rs4766598	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs4766598-G	0.2892	4E-17	(MMAB)	0.02348	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109855200	109855201	rs68094047	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q24.11	MYO1H	rs68094047-T	0.25041100000000005	1E-9		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1423	chr12	109855200	109855201	rs68094047	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	12q24.11	MYO1H	rs68094047-T	0.25041100000000005	1E-7		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1423	chr12	109857665	109857666	rs2217971	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.11		rs2217971-?	NR	3E-8				NR [NR]	N
1423	chr12	109866107	109866108	rs7137190	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7137190-G	0.4895	4E-10	(MMAB)	0.01631	NR unit increase	Illumina [1671387] (imputed)	N
1423	chr12	109866107	109866108	rs7137190	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.11	MMAB	rs7137190-?	NR	2E-13		0.006317	[0.0045-0.0082] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1423	chr12	109866610	109866611	rs77866602	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs77866602-C	0.4443	4E-9	(MMAB)	0.01622	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109866614	109866615	rs12424599	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12424599-G	0.2561	9E-16	(MMAB)	0.02402	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109867012	109867012	rs112270167	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs112270167-?	NR	4E-8	(female)	0.0185057	[0.012-0.025] unit increase	Affymetrix [25921788] (imputed)	N
1423	chr12	109870099	109870100	rs12817055	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.11		rs12817055-?	NR	4E-8				NR [NR]	N
1423	chr12	109870099	109870100	rs12817055	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q24.11	NR	rs12817055-T	0.257918149658033	1E-10		0.0067712213	[0.0047-0.0088] unit increase	NR [NR]	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	7E-17		0.0308979	[0.024-0.038] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	4E-14		0.0273759	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.11		rs7308864-A	0.47672	2E-10		0.0232205	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	5E-12		0.0249983	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	1E-15		0.0293081	[0.022-0.036] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	2E-8		0.021027	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs7308864-A	0.476708	3E-12		0.0254318	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109871178	109871179	rs7308864	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.11	MYO1H	rs7308864-A	0.475744	1E-35		0.0237446	[0.02-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1423	chr12	109873145	109873145	rs11282820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	12q24.11		rs11282820-T	0.633051	3E-11		0.027728	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873145	109873145	rs11282820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	12q24.11		rs11282820-T	0.633093	4E-8		0.0231698	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	8E-12		0.0268383	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	1E-15		0.0306138	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	4E-11		0.0256865	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476837	7E-13		0.0278082	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	3E-12		0.0277942	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	1E-16		0.0318198	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	5E-18		0.0321836	[0.025-0.039] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476837	8E-14		0.0291106	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476837	5E-14		0.0290006	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	2E-15		0.0298977	[0.023-0.037] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	6E-15		0.0296722	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	1E-11		0.0263466	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	2E-12		0.0268047	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109873226	109873227	rs6606717	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.11		rs6606717-A	0.476835	1E-15		0.0302961	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109874229	109874230	rs2075432	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs2075432-A	NR	9E-9		5.753	z score decrease	Affymetrix [10847151] (imputed)	N
1423	chr12	109874793	109874794	rs10850137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	12q24.11		rs10850137-C	0.694726	5E-8		0.0237183	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109874793	109874794	rs10850137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs10850137-C	0.694726	5E-8		0.023603	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109874793	109874794	rs10850137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	12q24.11		rs10850137-C	0.694726	2E-8		0.0241058	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109874793	109874794	rs10850137	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs10850137-C	NR	1E-12		7.078	z score decrease	Affymetrix [10847151] (imputed)	N
1423	chr12	109875933	109875934	rs10850139	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs10850139-C	0.4303	1E-13	(MMAB)	0.01976	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109876127	109876128	rs10850141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs10850141-T	0.3676	2E-12	(MMAB)	0.01921	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109877303	109877303	rs147582076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.11		rs147582076-T,rs147582076-T	0.629113	6E-11		0.0283395	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1423	chr12	109877303	109877303	rs147582076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.11		rs147582076-T,rs147582076-T	0.629113	6E-11		0.0283395	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1423	chr12	109878114	109878115	rs7973253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.11		rs7973253-A	0.632738	6E-10		0.0262014	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109878114	109878115	rs7973253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q24.11		rs7973253-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1423	chr12	109878114	109878115	rs7973253	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	12q24.11	FOXN4	rs7973253-A	0.369666	1E-9		6.08	z score decrease	NR [~ 10847151] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs11608355-C	0.3554	2E-17	(MMAB)	0.02316	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	12q24.11	NR	rs11608355-C	0.3132	7E-10		0.01181	[0.0081-0.0156] unit increase	NR [8968716] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs11608355-T	NR	2E-15		7.943	z score decrease	Affymetrix [10847151] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	12q24.11	NR	rs11608355-C	NR	5E-9		0.01457	[0.0097-0.0195] unit increase	Affymetrix [10847151] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.11	UNG	rs11608355-T	0.316757	2E-15		7.92	z score decrease	NR [10847151] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	12q24.11	UNG	rs11608355-T	0.316757	5E-9		5.83	z score decrease	NR [10847151] (imputed)	N
1423	chr12	109879291	109879292	rs11608355	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	12q24.11	intergenic	rs11608355-T	0.6832400000000001	5E-11		6.557	z score decrease	Illumina [18485882] (imputed)	N
1423	chr12	109880278	109880279	rs7132057	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	12q24.11	NR	rs7132057-A	0.316604	2E-9		5.981	unit decrease	NR [10847151] (imputed)	N
1423	chr12	109880522	109880523	rs11066591	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	12q24.11	MYO1H	rs11066591-G	NR	2E-8		0.0098405	[0.0064-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
1423	chr12	109881017	109881018	rs138934745	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs138934745-?	NR	6E-11		0.00378685	[-0.0015-0.00907] unit increase	Affymetrix [25921788] (imputed)	N
1423	chr12	109881017	109881018	rs138934745	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs138934745-?	NR	6E-11		0.0175841	[0.012-0.023] unit increase	Affymetrix [25921788] (imputed)	N
1423	chr12	109881808	109881809	rs35393419	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	12q24.11	NR	rs35393419-T	NR	2E-12		0.01882	NR unit increase	NR [7259579]	N
1423	chr12	109883116	109883117	rs3742021	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	12q24.11	MYO1H	rs3742021-?	NR	1E-9				Affymetrix [up to 9327396] (imputed)	N
1423	chr12	109883116	109883117	rs3742021	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	12q24.11	MYO1H	rs3742021-C	NR	7E-9		0.01335	unit decrease	Affymetrix [9327396] (imputed)	N
1423	chr12	109883116	109883117	rs3742021	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.11		rs3742021-?	NR	4E-8				NR [NR]	N
1423	chr12	109883116	109883117	rs3742021	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	12q24.11	UNG	rs3742021-T	0.302806	6E-10		6.18	z score decrease	NR [10847151] (imputed)	N
1423	chr12	109883253	109883254	rs3742020	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	12q24.11	NR	rs3742020-C	NR	2E-10		0.01627	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1423	chr12	109883576	109883577	rs7969719	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs7969719-?	NR	5E-13		0.0189213	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1423	chr12	109884366	109884367	rs7959663	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	12q24.11	MYO1H	rs7959663-C		3E-8				NR [NR] (imputed)	N
1423	chr12	109885373	109885374	rs888190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	12q24.11		rs888190-G	0.750714	1E-9		0.0279725	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1423	chr12	109895167	109895168	rs2338104	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	12q24.11	NR	rs2338104-?	NR	5E-9		0.6732342	[0.45-0.9] unit increase	Illumina [31978362] (imputed)	N
1423	chr12	109895167	109895168	rs2338104	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	12q24.11	MVK, MMAB	rs2338104-C	0.45	1E-10		0.07	[0.03-0.11] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1423	chr12	109895167	109895168	rs2338104	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	12q24.11	MVK, MMAB	rs2338104-G	0.45	3E-8		0.48	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1423	chr12	109896164	109896165	rs7313797	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7313797-T	0.4983	2E-16	(MMAB)	0.02193	NR unit increase	Illumina [1671387] (imputed)	N
1423	chr12	109896164	109896165	rs7313797	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	12q24.11	NR	rs7313797-T	0.445183	2E-9		5.99	z score decrease	NR [10847151] (imputed)	N
1423	chr12	109896297	109896298	rs1017220694	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs1017220694-A	0.1899	2E-33	(MMAB)	0.03848	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109898372	109898373	rs11066707	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q24.11	KCTD10	rs11066707-?	NR	8E-17		0.132212	[0.1-0.16] unit increase	Illumina [4804024] (imputed)	N
1423	chr12	109898731	109898732	rs1558804	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12q24.11	NR	rs1558804-G	0.451036247292579	1E-8		0.007299709	[0.0048-0.0098] unit increase	NR [NR]	N
1423	chr12	109898731	109898732	rs1558804	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs1558804-A	NR	7E-14		7.489	z score decrease	Affymetrix [10847151] (imputed)	N
1423	chr12	109904317	109904318	rs918106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs918106-C	0.476747	3E-13		0.0287095	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109904317	109904318	rs918106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs918106-C	0.476747	1E-8		0.0228637	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1423	chr12	109904317	109904318	rs918106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q24.11		rs918106-T	NR	2E-16		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1423	chr12	109905367	109905368	rs6606725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606725-C	0.56027	4E-8		0.0224877	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109905367	109905368	rs6606725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs6606725-C	0.56027	4E-8		0.0223716	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1423	chr12	109905367	109905368	rs6606725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.11		rs6606725-C	0.560248	3E-8		0.0220875	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1423	chr12	109905367	109905368	rs6606725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.11	NR	rs6606725-C	0.552148	1E-15				Affymetrix, Illumina [22063850] (imputed)	N
1423	chr12	109905367	109905368	rs6606725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.11	NR	rs6606725-C	0.557127	4E-18		0.016425	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1423	chr12	109909010	109909011	rs2058804	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	12q24.11	NR	rs2058804-A	0.4548	2E-19				Affymetrix, Illumina [at least 2500000] (imputed)	N
1423	chr12	109909010	109909011	rs2058804	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.11	NR	rs2058804-?	NR	8E-10	(conditional on round 2)	0.035229813	[0.024-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1423	chr12	109915726	109915727	rs1045582	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs1045582-T	0.1899	2E-33	(MMAB)	0.03848	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109920070	109920071	rs1543896	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs1543896-G	0.4268	3E-11	(MMAB)	0.01822	NR unit increase	Illumina [1671387] (imputed)	N
1423	chr12	109930542	109930543	rs34490570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.11	UBE3B	rs34490570-C	0.367934	2E-10		0.015158559	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1423	chr12	109937533	109937534	rs7298565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.11	NR	rs7298565-A	0.495029	8E-20				Affymetrix, Illumina [23467995] (imputed)	N
1423	chr12	109937533	109937534	rs7298565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.11	NR	rs7298565-A	0.525258	2E-17		0.015866	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1423	chr12	109937533	109937534	rs7298565	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	12q24.11		rs7298565-G	0.46	1E-7		1.61	[1.02-2.20] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1423	chr12	109939640	109939641	rs2241212	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	UBE3B	rs2241212-?		2E-11		0.0264	[0.019-0.034] unit decrease	Illumina [31500000] (imputed)	N
1423	chr12	109939640	109939641	rs2241212	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.11	UBE3B	rs2241212-A	0.5581	2E-8		0.0152	[0.0099-0.0205] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1423	chr12	109941302	109941303	rs7955932	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7955932-A	0.1899	2E-33	(MMAB)	0.03848	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109947904	109947905	rs3815575	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs3815575-T	0.331	4E-15	(MMAB)	0.02311	NR unit decrease	Illumina [1671387] (imputed)	N
1423	chr12	109950143	109950144	rs2241210	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.11		rs2241210-A	0.4631	1E-11		0.0071	[0.0051-0.0091] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1423	chr12	109950143	109950144	rs2241210	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.11	MVK	rs2241210-A	0.447	8E-24	(Trans-ethnic initial)	0.0332	[0.026-0.04] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs2241208-G	0.4355	2E-12	(MMAB)	0.01925	NR unit increase	Illumina [1671387] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	12q24.11	NR	rs2241208-?	NR	4E-9		0.6769778	[0.45-0.9] unit increase	Illumina [31978362] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	12q24.11	NR	rs2241208-C	0.522	8E-10		0.013382	[0.0091-0.0177] unit increase	NR [9732723] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs2241208-G	NR	3E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs2241208-G	0.468	2E-7	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs2241208-G	NR	2E-14		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs2241208-G	0.468	4E-9	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109962794	109962795	rs2241208	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	12q24.11	MMAB, MVK	rs2241208-C	0.51	9E-10		0.036	[0.024-0.048] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.11	UBE3B	rs10744826-G	NR	2E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.11	UBE3B	rs10744826-G	NR	1E-24				Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.11	UBE3B	rs10744826-G	NR	1E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.11	UBE3B	rs10744826-G	NR	6E-9	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.11	UBE3B	rs10744826-G	NR	6E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.11	UBE3B	rs10744826-G	NR	1E-29				Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	7E-8	(Asian)	0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	3E-19		0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	1E-9	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	7E-9	(Asian)	0.009239	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	3E-7	(EA)	0.007674	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.11	UBE3B	rs10744826-G	NR	1E-18		0.008719	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs10744826-C	NR	7E-9		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs10744826-C	0.467	4E-7	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs10744826-C	NR	5E-15		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109965511	109965512	rs10744826	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs10744826-C	0.467	9E-10	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1423	chr12	109966197	109966198	rs1558803	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q24.11	UBE3B	rs1558803-A	0.02	1E-10		1.19	[1.11-1.27]	Illumina [5167567] (imputed)	N
1424	chr12	109976892	109976893	rs2004359	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q24.11	UBE3B	rs2004359-G	0.47	5E-11		0.42	[0.3-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1424	chr12	109979266	109979267	rs12831657	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12831657-C	0.1533	7E-27	(MMAB)	0.03903	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	109980515	109980516	rs7956536	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		12q24.11	UBE3B, MMAB	rs7956536-?	0.53	4E-6		1.25		Illumina [90536]	N
1424	chr12	109982534	109982535	rs7953327	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q24.11	UBE3B	rs7953327-G	0.8298	3E-10		0.5522	[0.38-0.72] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1424	chr12	109982577	109982578	rs6606731	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.11		rs6606731-T	0.809057	2E-8		0.0281891	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1424	chr12	109982577	109982578	rs6606731	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.11	NR	rs6606731-A	0.1923	2E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1424	chr12	109982872	109982876	rs57044180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.11		rs57044180-C	NR	7E-16		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1424	chr12	109986917	109986918	rs888194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.11	MMAB	rs888194-G	0.440461	2E-15		0.017700369	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1424	chr12	109986917	109986918	rs888194	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs888194-C	0.4983	3E-17	(MMAB)	0.02276	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr12	109986917	109986918	rs888194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q24.11	NR	rs888194-G	0.449777406639775	2E-9		0.0069014137	[0.0046-0.0092] unit increase	NR [NR]	N
1424	chr12	109986917	109986918	rs888194	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q24.11	NR	rs888194-G	0.449777406639775	1E-9		0.005743171	[0.0039-0.0076] unit increase	NR [NR]	N
1424	chr12	109986917	109986918	rs888194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.11		rs888194-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1424	chr12	109986917	109986918	rs888194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.11		rs888194-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1424	chr12	109986917	109986918	rs888194	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	12q24.11	intergenic	rs888194-C	0.5569299999999999	1E-9		6.071	z score decrease	Illumina [18485882] (imputed)	N
1424	chr12	109987478	109987479	rs3069003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.11	MMAB	rs3069003-C	0.507388	7E-10		0.014009793	[0.0096-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1424	chr12	109988213	109988214	rs11067211	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	12q24.11	MMAB	rs11067211-?	NR	2E-7		5.24	NR z score increase	Illumina [8500000] (imputed)	N
1424	chr12	109988213	109988214	rs11067211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.11		rs11067211-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1424	chr12	109989227	109989228	rs12321904	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	UBE3B, MMAB	rs12321904-?		6E-18		0.04	[0.031-0.049] unit decrease	Illumina [31500000] (imputed)	N
1424	chr12	109989227	109989228	rs12321904	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12321904-G	0.493	7E-10	(MMAB)	0.01646	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr12	109989227	109989228	rs12321904	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.11	NA	rs12321904-T	0.5004	3E-9		0.0096	[0.0065-0.0127] unit increase	NR [~ 27400000] (imputed)	N
1424	chr12	109990368	109990369	rs7974321	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7974321-C	0.2509	5E-30	(MMAB)	0.03433	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	109990368	109990369	rs7974321	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.11	NA	rs7974321-C	0.1941	2E-10	(Female)	1.0615711	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1424	chr12	109992132	109992134	rs986610384	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs986610384-G	0.3223	1E-16	(MMAB)	0.02445	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	109993602	109993603	rs11067231	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.11	MMAB	rs11067231-C	0.476104	3E-29		0.0220437	[0.018-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1424	chr12	109994869	109994870	rs9593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs9593-A	0.476734	8E-9		0.0236228	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1424	chr12	109994869	109994870	rs9593	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	12q24.11		rs9593-A	0.476734	2E-8		0.0226033	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1424	chr12	109997644	109997645	rs7964021	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7964021-G	0.4303	2E-11	(MMAB)	0.0182	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	12q24.11	NR	rs7134594-?	NR	6E-10		0.7115714	[0.49-0.94] unit increase	Illumina [31978362] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.11		rs7134594-T	0.5376	5E-12		0.0076	[0.0054-0.0098] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7134594-C	NR	5E-9		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7134594-C	0.466	3E-7	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7134594-C	NR	2E-14		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.11	NR	rs7134594-C	0.466	2E-9	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.11	MVK	rs7134594-C	0.48	2E-13		0.035	[NR] unit decrease	NR [NR] (imputed)	N
1424	chr12	110000192	110000193	rs7134594	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.11	MVK, MMAB	rs7134594-C	0.47	7E-15		0.44	[0.3-0.58] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1424	chr12	110002776	110002777	rs10850379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	12q24.11		rs10850379-T	NR	5E-12		0.0461	[0.033-0.059] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1424	chr12	110002776	110002777	rs10850379	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	12q24.11	NR	rs10850379-T	NR	2E-8		0.01356	[0.0089-0.0183] unit increase	Affymetrix [10847151] (imputed)	N
1424	chr12	110002776	110002777	rs10850379	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	12q24.11	FOXN4	rs10850379-T	0.425983	9E-10		6.14	z score increase	NR [10847151] (imputed)	N
1424	chr12	110003671	110003672	rs7301541	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs7301541-A	0.1934	8E-31	(MMAB)	0.03675	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110004039	110004040	rs754179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.11	NR	rs754179-C	0.735084	8E-12				Affymetrix, Illumina [17210439] (imputed)	N
1424	chr12	110007938	110007939	rs11614986	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	12q24.11	NR	rs11614986-A	NR	1E-8		0.942	unit increase	Affymetrix [14661600] (imputed)	N
1424	chr12	110007992	110007993	rs59227481	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	12q24.11	MMAB	rs59227481-G	NR	6E-7	(Fixed effect)	0.08	[0.041-0.119] unit increase	Illumina [4736131] (imputed)	N
1424	chr12	110010150	110010151	rs2111216	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.11	NR	rs2111216-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1424	chr12	110010150	110010151	rs2111216	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs2111216-A	NR	5E-9		5.849	z score decrease	Affymetrix [10847151] (imputed)	N
1424	chr12	110010865	110010866	rs12314392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12314392-G	0.4948	2E-17	(MMAB)	0.02261	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110012509	110012510	rs66616264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.11	NR	rs66616264-C	0.737862	5E-13		0.015505	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1424	chr12	110015757	110015758	rs66499479	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	12q24.11	MYO1H, KCTD10, UBE3B, MMAB, MVK	rs66499479-?	NR	6E-11		0.03174	[0.022-0.041] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110015892	110015893	rs7954144	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.11	MVK	rs7954144-A	0.4301	8E-24		0.0273	[0.022-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1424	chr12	110017124	110017125	rs3742015	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q24.11	MVK	rs3742015-C	NR	3E-8		0.0227007	[0.015-0.031] unit increase	Affymetrix [16832071] (imputed)	N
1424	chr12	110020120	110020125	rs141474441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.11	MVK	rs141474441-T	0.381384	1E-10		0.014706322	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	2E-13		0.0275454	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	2E-13		0.0275454	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-13		0.027905	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-13		0.027905	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-10		0.0238677	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-10		0.0238677	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-13		0.0273549	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	3E-13		0.0273549	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	5E-12		0.02738	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	5E-12		0.02738	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	2E-11		0.0253438	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	2E-11		0.0253438	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	1E-12		0.0273719	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	1E-12		0.0273719	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	1E-11		0.0255309	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020120	110020120	rs770185500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.11		rs770185500-TTTTTG,rs770185500-TTTTTG	0.617306	1E-11		0.0255309	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020894	110020894	rs71079573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.11		rs71079573-G	0.605902	4E-8		0.0230905	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020894	110020894	rs71079573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	12q24.11		rs71079573-G	0.60593	1E-10		0.0272738	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020894	110020894	rs71079573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.11		rs71079573-G	0.60593	2E-11		0.0283753	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020894	110020894	rs71079573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	12q24.11		rs71079573-G	0.60593	3E-9		0.0248902	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110020894	110020894	rs71079573	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.11	MVK	rs71079573-?	NR	3E-8		0.0147	[0.01-0.0194] unit increase	Affymetrix [5701386] (imputed)	N
1424	chr12	110024540	110024541	rs2270375	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs2270375-G	0.2666	8E-16	(MMAB)	0.02485	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs11067376-A	0.641963	5E-9		0.0242967	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.11		rs11067376-A	0.641963	9E-9		0.0238421	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs11067376-G	0.4007	5E-15	(MMAB)	0.02076	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.11	NR	rs11067376-A	0.359496	2E-13		7.36	z score decrease	NR [10847151] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	12q24.11	NR	rs11067376-A	0.359496	1E-8		5.67	z score decrease	NR [~ 10847151] (imputed)	N
1424	chr12	110027794	110027795	rs11067376	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	12q24.11	UNG	rs11067376-A	0.359496	4E-10		6.248	unit decrease	NR [10847151] (imputed)	N
1424	chr12	110029185	110029186	rs2270374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.11	NR	rs2270374-A	NR	4E-12		0.0216	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1424	chr12	110037412	110037413	rs9888325	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs9888325-G	0.4861	9E-10	(MMAB)	0.01665	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr12	110044341	110044342	rs17608087	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		MVK, FAM222A	rs17608087-G	NR	1E-11		1.05	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
1424	chr12	110044917	110044918	rs1541597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.11		rs1541597-T	NR	1E-11		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1424	chr12	110044917	110044918	rs1541597	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.11	intergenic	rs1541597-T	0.2012	5E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix [18391927] (imputed)	N
1424	chr12	110044917	110044918	rs1541597	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.11	NR	rs1541597-?	NR	5E-6	(male)	0.19833	[0.11-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1424	chr12	110044917	110044918	rs1541597	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.11	NR	rs1541597-?	NR	1E-8		0.1573	[0.1-0.21] unit increase	Affymetrix [7794483] (imputed)	N
1424	chr12	110046697	110046698	rs17608150	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.11	NR	rs17608150-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1424	chr12	110046697	110046698	rs17608150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.11		rs17608150-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1424	chr12	110050109	110050110	rs7314538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.11		rs7314538-G	0.441202	3E-12		0.015577478	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1424	chr12	110054355	110054356	rs1985825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs1985825-C	0.4739	1E-8	(MMAB)	0.01552	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110055402	110055403	rs56248035	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q24.11	NR	rs56248035-T	0.08	1E-5		1.13	[1.07-1.19]	Illumina [8468885] (imputed)	N
1424	chr12	110057018	110057019	rs11609480	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs11609480-C	0.1934	1E-14	(MMAB)	0.02665	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110057249	110057250	rs35287743	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs35287743-T	0.122	2E-11	(MMAB)	0.0271	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110057249	110057250	rs35287743	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs35287743-?	NR	7E-17		0.00384032	[-0.00372-0.0114] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110057249	110057250	rs35287743	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs35287743-?	NR	7E-17		0.0320281	[0.025-0.04] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110057249	110057250	rs35287743	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs35287743-?	NR	4E-13	(female)	0.0379179	[0.028-0.048] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110057249	110057250	rs35287743	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	12q24.11	ACACB, FOXN4, MYO1H, KCTD10, UBE3B, MMAB, MVK	rs35287743-?	NR	2E-19		0.0345582	[0.027-0.042] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110057888	110057889	rs12830053	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12830053-C	0.2282	1E-17	(MMAB)	0.02753	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110059430	110059431	rs10850481	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.11	NR	rs10850481-A	NR	2E-8		5.578	z score decrease	Affymetrix [10847151] (imputed)	N
1424	chr12	110060983	110060984	rs11608727	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	12q24.11	intergenic	rs11608727-?	NR	8E-9		0.0178438	[0.012-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1424	chr12	110062692	110062693	rs73200436	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.11	Intergenic	rs73200436-A	0.997	4E-6	(AA)	1.016	NR unit increase	Illumina [NR] (imputed)	N
1424	chr12	110069189	110069190	rs11067592	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.11	MVK, FAM222A	rs11067592-?	NR	5E-18		0.08855	[0.068-0.109] unit decrease novel	Illumina [6108953] (imputed)	N
1424	chr12	110069189	110069190	rs11067592	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	12q24.11	MVK, FAM222A	rs11067592-?	NR	3E-8		0.04013	[0.026-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1424	chr12	110078966	110078967	rs73200449	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.11	Intergenic	rs73200449-T	0.994	2E-6	(AA)	0.629	NR unit increase	Illumina [NR] (imputed)	N
1424	chr12	110083224	110083225	rs12309873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs12309873-A	0.2962	2E-11	(MMAB)	0.02031	NR unit decrease	Illumina [1671387] (imputed)	N
1424	chr12	110083440	110083441	rs10850533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.11		rs10850533-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1424	chr12	110098271	110098272	rs79208462	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	12q24.11	MVK, FAM222A	rs79208462-?	NR	6E-9		0.07017	[0.046-0.094] unit increase novel	Illumina [6108953] (imputed)	N
1425	chr12	110111273	110111274	rs75756843	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.11		rs75756843-A	0.0214	6E-9		0.0288	[0.019-0.038] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1425	chr12	110111511	110111512	rs201421746	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q24.11	NR	rs201421746-?	NR	4E-6		10655.787	NR unit decrease	Illumina [2379855]	N
1425	chr12	110115285	110115286	rs7977614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q24.11		rs7977614-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1425	chr12	110115285	110115286	rs7977614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.11	Intergenic	rs7977614-A	0.718	7E-12	(MTAG)	0.0127	[0.0092-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1425	chr12	110115285	110115286	rs7977614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.11		rs7977614-A	0.7143	7E-17		0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1425	chr12	110115285	110115286	rs7977614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.11	Intergenic	rs7977614-A	0.7143	2E-18	(MTAG)	0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1425	chr12	110115285	110115286	rs7977614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.11	Intergenic	rs7977614-A	0.7084	2E-12	(MTAG)	0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1425	chr12	110116871	110116872	rs11067829	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.11	NR	rs11067829-?	NR	5E-13		0.04469	[0.033-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
1425	chr12	110124467	110124468	rs140402895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.11	MVK, FAM222A	rs140402895-C	0.987559	2E-11	(2-hydroxyhippurate (salicylurate))	0.499	[0.35-0.64] unit decrease	Illumina [13039987] (imputed)	N
1425	chr12	110124467	110124468	rs140402895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12q24.11	MVK, FAM222A	rs140402895-C	0.987559	2E-11	(2-hydroxyhippurate (salicylurate))	0.499	[0.35-0.64] unit decrease	Illumina [13039987] (imputed)	N
1425	chr12	110133203	110133204	rs549872813	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q24.11	FAM222A	rs549872813-T	0.0033	6E-6		0.3883	[0.22-0.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1425	chr12	110133203	110133204	rs549872813	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q24.11	FAM222A	rs549872813-T	0.0033	6E-6		0.3883	[0.22-0.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1425	chr12	110153674	110153675	rs77346308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.11		rs77346308-T	NR	3E-12		0.2506	[0.18-0.32] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1425	chr12	110153674	110153675	rs77346308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.11		rs77346308-T	0.095562481	3E-12		0.25064364	[0.18-0.32] unit increase	Illumina [13425416] (imputed)	N
1425	chr12	110196598	110196599	rs10850705	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	12q24.11	FAM222A-AS1	rs10850705-T	0.4424	3E-7		0.0079	[0.005-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
1425	chr12	110197775	110197776	rs734152	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	12q24.11	FAM222A-AS1	rs734152-G	0.8804	1E-6	(EA)			Illumina [NR] (imputed)	N
1426	chr12	110237770	110237771	rs59596837	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	12q24.11	TRPV4	rs59596837-G	0.7502	9E-6		0.0297	[0.017-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1426	chr12	110237770	110237771	rs59596837	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	12q24.11	TRPV4	rs59596837-G	0.7502	5E-6		0.0305	[0.017-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1426	chr12	110237770	110237771	rs59596837	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	12q24.11	TRPV4	rs59596837-G	0.7502	4E-6		0.0303	[0.017-0.043] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1426	chr12	110237770	110237771	rs59596837	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	12q24.11	TRPV4	rs59596837-G	0.7502	9E-6		0.0295	[0.017-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1426	chr12	110259419	110259420	rs10850813	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12q24.11	TRPV4	rs10850813-?	NR	5E-9		0.02639	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1426	chr12	110260701	110260702	rs7971845	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA		TRPV4	rs7971845-?	NR	3E-9		0.02743	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1426	chr12	110264902	110264903	rs4565962	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function	131 Chinese ancestry dizygotic twin pairs	NA	12q24.11		rs4565962-?	NR	3E-6				Illumina [1365315]	N
1426	chr12	110283556	110283557	rs188481646	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.11	NR	rs188481646-?	NR	7E-6		4.492	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1426	chr12	110286428	110286429	rs10437851	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	12q24.11		rs10437851-A	0.0597	3E-6		2.356	[1.641-3.381]	Affymetrix [7975321] (imputed)	N
1426	chr12	110294901	110294902	rs12423752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.11	GLTP	rs12423752-C	0.230551	8E-10		0.016209127	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1426	chr12	110310915	110310916	rs7397059	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q24.11	NA	rs7397059-T	0.5599	6E-10		0.0101	[0.007-0.0132] unit increase	NR [~ 27400000] (imputed)	N
1426	chr12	110312231	110312232	rs10850913	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (4 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	12q24.11		rs10850913-?	NR	1E-6				Illumina [1365315]	N
1426	chr12	110312231	110312232	rs10850913	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function	131 Chinese ancestry dizygotic twin pairs	NA	12q24.11		rs10850913-?	NR	2E-6				Illumina [1365315]	N
1426	chr12	110316684	110316685	rs76313061	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.11	NR	rs76313061-C	0.02091	1E-8	(PLD3)	0.01933	NR unit increase	Illumina [1671387] (imputed)	N
1426	chr12	110331966	110331967	rs529320227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.11	NR	rs529320227-A	7.96E-4	9E-12		0.271614	[0.19-0.35] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1426	chr12	110336545	110336546	rs116940627	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	12q24.11		rs116940627-?	NR	2E-8		0.0169	NR unit decrease	NR [4484088] (imputed)	N
1426	chr12	110340052	110340053	rs7956131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.11	TCHP	rs7956131-G	0.074576	1E-9		0.02631572	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1426	chr12	110342420	110342421	rs11068852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.11		rs11068852-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1426	chr12	110342597	110342598	rs74416240	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.11	TCHP	rs74416240-A		2E-7		1.37		Illumina [31245]	N
1426	chr12	110352508	110352509	rs7312132	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.11	TCHP	rs7312132-G		1E-6		0.354	unit increase	Affymetrix [at least 2696785] (imputed)	N
1426	chr12	110352508	110352509	rs7312132	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.11	TCHP	rs7312132-G		7E-9		0.283	unit increase	Affymetrix [at least 2696785] (imputed)	N
1426	chr12	110355884	110355885	rs16940687	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.11	GIT2	rs16940687-?	NR	2E-6	(SM 22:0)	3.589	[2.11-5.06] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1427	chr12	110363662	110363663	rs140504578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q24.11		rs140504578-A	0.048359	4E-22		0.0884303	[0.071-0.106] unit decrease	Illumina [13478928] (imputed)	N
1427	chr12	110368200	110368201	rs2292354	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	12q24.11		rs2292354-?	NR	9E-6				Illumina [1365315]	N
1427	chr12	110368200	110368201	rs2292354	28922980	Konte B	2017-09-19	World J Biol Psychiatry	A genome-wide association study of early gamma-band response in a schizophrenia case-control sample.	Disturbances of the gamma-frequency band of electroencephalography measures in schizophrenia	74 European ancestry cases, 241 European ancestry controls	NA	12q24.11	GIT2, TCHP	rs2292354-T	NR	4E-6		0.243	[0.14-0.34] unit increase	Illumina [304635]	N
1427	chr12	110368200	110368201	rs2292354	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	12q24.11	GIT2	rs2292354-?	0.46	7E-6	(HDL)			Illumina [308011]	N
1427	chr12	110390978	110390979	rs925368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	12q24.11		rs925368-C	0.114369	3E-19		0.05445	[0.043-0.066] unit increase	Illumina [13479091] (imputed)	N
1427	chr12	110398144	110398145	rs4766646	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	12q24.11	GIT2, TCHP, ANKRD13A	rs4766646-T		4E-7		0.3211	unit increase	Illumina [5767231] (imputed)	N
1427	chr12	110406385	110406386	rs9634314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.11		rs9634314-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1427	chr12	110441729	110441730	rs11064687	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.11	ANKRD13A	rs11064687-G	0.9175	3E-8		0.3775	[0.24-0.51] mmHg increase	Affymetrix [NR] (imputed)	N
1427	chr12	110456703	110456704	rs2287173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.11		rs2287173-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1427	chr12	110459484	110459485	rs75584653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	12q24.11		rs75584653-T	0.125427	1E-17		0.0691039	[0.053-0.085] unit increase	Illumina [13467171] (imputed)	N
1427	chr12	110489207	110489208	rs11064860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q24.11		rs11064860-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1427	chr12	110493221	110493222	rs10849689	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.11	NR	rs10849689-A	NR	6E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1428	chr12	110507990	110507991	rs148526428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.11	Intergenic	rs148526428-T	0.0875	3E-8	(MTAG)	0.0224	[0.014-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1428	chr12	110510469	110510470	rs11833313	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.11	C12orf76	rs11833313-A	NR	1E-8		0.03114403	[0.021-0.042] unit decrease	Affymetrix [NR]	N
1428	chr12	110510860	110510861	rs115864136	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	12q24.11	NR	rs115864136-?	NR	2E-6		1.3632	[0.78-1.95] unit increase	Illumina [at least 560000] (imputed)	N
1428	chr12	110513315	110513316	rs78781559	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q24.11	GLTP, TCHP, GIT2, ANKRD13A, C12orf76, IFT81	rs78781559-A	0.083	3E-6		1.10583	[1.06-1.15]	NR [9372253] (imputed)	N
1428	chr12	110527001	110527002	rs12427218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.11		rs12427218-A	0.239865	6E-12		0.01783026	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr12	110581730	110581731	rs7300001	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.11	NR	rs7300001-?	NR	5E-6		4.574	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1428	chr12	110581730	110581731	rs7300001	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	12q24.11	IFT81	rs7300001-G	NR	9E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix [9304965] (imputed)	N
1428	chr12	110582337	110582338	rs141965732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12q24.11		rs141965732-T	0.126971	3E-14		0.0412517	[0.031-0.052] unit increase	Illumina [13479135] (imputed)	N
1428	chr12	110582337	110582338	rs141965732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.11		rs141965732-T	NR	1E-40		0.0846	[0.072-0.097] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1428	chr12	110582337	110582338	rs141965732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q24.11		rs141965732-T	NR	1E-8		0.0474	[0.031-0.064] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1428	chr12	110586277	110586278	rs12315174	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	12q24.11	NR	rs12315174-G	0.774	4E-8		0.92524	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
1428	chr12	110594502	110594503	rs60594510	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.11	IFT81	rs60594510-T	NR	8E-9		0.029005406	[0.019-0.039] unit increase	Affymetrix [NR]	N
1428	chr12	110597303	110597304	rs12313068	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.11	IFT81	rs12313068-T	NR	2E-9		0.023780067	[0.016-0.032] unit increase	Affymetrix [NR]	N
1428	chr12	110602274	110602275	rs7975364	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.11	IFT81	rs7975364-?		5E-6				Illumina [4322238] (imputed)	N
1428	chr12	110619348	110619349	rs11065340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.11	NR	rs11065340-C	NR	1E-14		0.0249	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1429	chr12	110626012	110626013	rs141135753	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	12q24.11	NR	rs141135753-?	NR	9E-6		1.2212	[0.67-1.77] unit decrease	Illumina [at least 560000] (imputed)	N
1429	chr12	110637867	110637868	rs76309426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.11	NR	rs76309426-C	0.991701	4E-11		0.078052	[0.055-0.101] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1429	chr12	110675362	110675363	rs144825998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	12q24.11		rs144825998-T	0.126209	3E-16		0.0501752	[0.038-0.062] unit decrease	Illumina [13475706] (imputed)	N
1429	chr12	110675362	110675363	rs144825998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	12q24.11		rs144825998-T	0.126921	4E-41		0.0854557	[0.073-0.098] unit decrease	Illumina [13476299] (imputed)	N
1429	chr12	110683226	110683227	rs3026418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q24.11		rs3026418-C	NR	3E-12		0.0327	[0.023-0.042] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.11		rs117121174-A	NR	1E-36		0.2932	[0.25-0.34] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12q24.11		rs117121174-A	0.126686	1E-29		0.0713444	[0.059-0.084] unit decrease	Illumina [13476266] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	12q24.11		rs117121174-A	0.127671	6E-13		0.0430652	[0.031-0.055] unit decrease	Illumina [13477767] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	998 European ancestry cases, 475,308 European ancestry controls, 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	12q24.11		rs117121174-A	NR	1E-8		0.3794	[0.25-0.51] unit increase	Affymetrix, Illumina [25843129] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	12q24.11		rs117121174-A	0.126455815	1E-8		0.37939438	[0.25-0.51] unit increase	Illumina [13427188] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	12q24.11		rs117121174-A	0.127657	1E-11		0.0411969	[0.029-0.053] unit decrease	Illumina [13477770] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	12q24.11		rs117121174-A	NR	2E-8		0.2296	[0.15-0.31] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1429	chr12	110697329	110697330	rs117121174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	12q24.11	NR	rs117121174-G	0.88772	4E-19		0.062581	[0.049-0.076] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1429	chr12	110697447	110697448	rs10774599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.11		rs10774599-?	NR	6E-19				NR [~ 8900000] (imputed)	N
1429	chr12	110704486	110704487	rs11065611	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q24.11	ATP2A2	rs11065611-?	0.06	1E-7	(Alpha-1 globulin)			Illumina [496032]	N
1429	chr12	110705799	110705800	rs1986123	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.11	NR	rs1986123-?		5E-6				Illumina [4322238] (imputed)	N
1429	chr12	110708745	110708746	rs73206853	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	12q24.11	NR	rs73206853-A	NR	4E-6	(phenotype 2)	1.88	[NR]	Illumina [> 8000000] (imputed)	N
1429	chr12	110714856	110714856	rs397970293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q24.11		rs397970293-GC	NR	3E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1429	chr12	110719191	110719192	rs3026433	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	12q24.11	NR	rs3026433-G	0.22499999999999998	6E-7		1.0986717	[NR]	NR [9372253] (imputed)	N
1429	chr12	110723202	110723203	rs3026445	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	12q24.11	ATP2A2	rs3026445-C	0.356	3E-12		0.62	[0.44-0.8] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	12q24.11		rs4766428-?	NR	4E-9		0.0177	NR unit increase	NR [4484088] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	12q24.11		rs4766428-?	NR	2E-8		0.0185	NR unit increase	NR [4425810] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12q24.11	NR	rs4766428-?		5E-9				NR [8377093]	N
1429	chr12	110723244	110723245	rs4766428	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q24.11	ATP2A2, IFT81	rs4766428-?		5E-8				NR [6786993] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.11	NR	rs4766428-?	NR	2E-8		1.05855	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q24.11	ATP2A2	rs4766428-?	NR	2E-8		0.011449439	[0.0075-0.0154] unit decrease	NR [7306098]	N
1429	chr12	110723244	110723245	rs4766428	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.11	ATP2A2	rs4766428-T	NR	6E-10	(EA)	1.0719	[1.05-1.09]	Illumina [6627481] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.11	ATP2A2	rs4766428-T	NR	3E-10		1.07	[1.05-1.09]	Illumina [6627481] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12q24.11	ATP2A2	rs4766428-?	NR	3E-14		1.0787487	[1.06-1.10]	Illumina [8000000] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.11	ANAPC7, ATP2A2	rs4766428-T	NR	3E-9		1.065	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.11	NR	rs4766428-T	NR	2E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
1429	chr12	110723244	110723245	rs4766428	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12q24.11	ATP2A2	rs4766428-T	0.474	1E-9		1.068	[1.045-1.091]	Affymetrix, Illumina [9005918] (imputed)	N
1429	chr12	110730140	110730141	rs553307433	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q24.11	ATP2A2	rs553307433-A	0.0033	4E-6		0.3979	[0.23-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1429	chr12	110730140	110730141	rs553307433	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	12q24.11	ATP2A2	rs553307433-A	0.0033	4E-6		0.3979	[0.23-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1430	chr12	110780539	110780540	rs3026482	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	12q24.11		rs3026482-A	0.77	1E-11		0.047	[0.033-0.061] unit decrease	Affymetrix [NR]	N
1430	chr12	110780539	110780540	rs3026482	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	12q24.11		rs3026482-A	0.77	9E-8		0.037	[0.023-0.051] unit decrease	Affymetrix [NR]	N
1430	chr12	110782026	110782027	rs3026485	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	12q24.11	ATP2A2	rs3026485-?		7E-6	(AIRg)	15.24	[5.32-25.16] unit increase	Illumina [693128]	N
1430	chr12	110815921	110815922	rs28609096	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.11	ANAPC7	rs28609096-?		4E-6				Illumina [4322238] (imputed)	N
1430	chr12	110819138	110819139	rs28637922	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	12q24.11		rs28637922-?	NR	8E-12		0.0162	NR unit decrease	NR [4548414] (imputed)	N
1430	chr12	110819138	110819139	rs28637922	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	12q24.11	ANAPC7	rs28637922-T	0.261	4E-8		1.173	[0.76-1.59] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1430	chr12	110836225	110836226	rs374122177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.11		rs374122177-G	NR	1E-9		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1430	chr12	110876008	110876009	rs61106808	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	12q24.11	ARPC3	rs61106808-C	0.8761	2E-8		0.019194333	[0.012-0.026] unit decrease	Affymetrix [11514463] (imputed)	N
1431	chr12	110898912	110898913	rs117173376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.11		rs117173376-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1431	chr12	110903379	110903380	rs6606686	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.11	GPN3	rs6606686-G	0.319388	3E-11		0.00974754	[0.0069-0.0126] unit increase	Affymetrix [12370749]	N
1431	chr12	110903379	110903380	rs6606686	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.11	NR	rs6606686-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1431	chr12	110903379	110903380	rs6606686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.11		rs6606686-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1431	chr12	110903379	110903380	rs6606686	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.11	NA	rs6606686-C	0.6969	4E-19		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1431	chr12	110903379	110903380	rs6606686	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q24.11	NA	rs6606686-C	0.6969	4E-19		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1432	chr12	111037343	111037344	rs11065675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.11	NR	rs11065675-A	NR	6E-15		0.0253	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1432	chr12	111062851	111062852	rs1502337	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.11	TCTN1	rs1502337-T	0.366	7E-6		0.014	[0.0078-0.0196] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1432	chr12	111062851	111062852	rs1502337	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.11	TCTN1	rs1502337-T	0.357	6E-6	(EA)	0.014	[0.0081-0.0203] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1432	chr12	111110762	111110763	rs61942632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.11	HVCN1	rs61942632-C	0.240094	2E-11		0.017415999	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr12	111126608	111126609	rs28720928	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	12q24.11	HVCN1	rs28720928-T	0.1135	1E-9		0.12	NR SD units decrease	Illumina [21568490] (imputed)	N
1432	chr12	111133087	111133088	rs534772444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.11		rs534772444-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1433	chr12	111155530	111155531	rs11065706	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	12q24.11	PPP1CC	rs11065706-T	0.756	6E-7				Affymetrix, Illumina [2516789] (imputed)	N
1433	chr12	111229644	111229645	rs850517	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.11		rs850517-C	0.407	8E-10				Affymetrix [10369434] (imputed)	N
1433	chr12	111229644	111229645	rs850517	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.11		rs850517-C	0.407	2E-15				Affymetrix [10369434] (imputed)	N
1433	chr12	111240950	111240951	rs73195822	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	12q24.11	Intergenic	rs73195822-G	NR	2E-6		0.0318097	[0.019-0.045] unit increase	Illumina [13520550] (imputed)	N
1433	chr12	111251436	111251437	rs7966257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.11		rs7966257-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1433	chr12	111254418	111254419	rs2078434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.11		rs2078434-A	0.49	2E-17				Affymetrix [10369434] (imputed)	N
1433	chr12	111262181	111262182	rs12833856	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q24.11	CCDC63	rs12833856-G	0.357	4E-7		1.0670536		NR [9372253] (imputed)	N
1434	chr12	111281635	111281636	rs12184466	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12q24.11	RP1-74B13.2	rs12184466-C	0.8001	3E-24		0.2533	[0.2-0.3] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1434	chr12	111293469	111293470	rs76464604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	12q24.11	NR	rs76464604-G	0.856427	2E-18		0.072358	[0.056-0.089] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
1434	chr12	111314288	111314289	rs11612727	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.11	CCDC63	rs11612727-C		1E-10		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1434	chr12	111333621	111333622	rs10849915	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	12q24.11	CCDC63	rs10849915-?	NR	8E-9				Affymetrix [344366]	N
1434	chr12	111333621	111333622	rs10849915	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	12q24.11	CCDC63	rs10849915-C	0.23	4E-28	(East Asian)	1.7		Affymetrix [NR] (imputed)	N
1434	chr12	111333621	111333622	rs10849915	21270382	Baik I	2011-01-26	Am J Clin Nutr	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry male individuals	1,113 Korean ancestry male individuals	12q24.11	CCDC63	rs10849915-G	0.18	1E-23		0.55	[0.45-0.65] unit decrease	Affymetrix [315914]	N
1434	chr12	111338793	111338794	rs11065756	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	12q24.11	CCDC63	rs11065756-?	NR	2E-9				Affymetrix [344366]	N
1434	chr12	111340242	111340243	rs10774610	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.11	CCDC63	rs10774610-C		5E-7		1.3		Illumina [31245]	N
1434	chr12	111340242	111340243	rs10774610	21372407	Takeuchi F	2011-03-01	Circ J	Confirmation of ALDH2 as a Major locus of drinking behavior and of its variants regulating multiple metabolic phenotypes in a Japanese population.	Drinking behavior	733 Japanese ancestry cases, 729 Japanese ancestry controls	2,794 Japanese ancestry drinkers, 1,521 Japanese ancestry chance drinkers, 1,351 Japanese ancestry non-drinkers	12q24.11	CCDC63	rs10774610-?	0.78	9E-120		3.33	[3.03-3.70]	Illumina [456827]	N
1434	chr12	111345661	111345662	rs35734599	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.11		rs35734599-G	0.744	2E-9				Affymetrix [10369434] (imputed)	N
1434	chr12	111345661	111345662	rs35734599	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.11		rs35734599-G	0.744	1E-10				Affymetrix [10369434] (imputed)	N
1434	chr12	111349222	111349223	rs12231049	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.11	MYL2	rs12231049-G	0.39	8E-9		0.83	[0.78-0.89]	Affymetrix [NR]	N
1434	chr12	111350654	111350655	rs3782889	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.11	MYL2	rs3782889-G	0.17	2E-8		0.84	[0.79-0.89]	Affymetrix [NR]	N
1434	chr12	111350654	111350655	rs3782889	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	12q24.11	MYL2	rs3782889-?	NR	1E-9				Affymetrix [344366]	N
1434	chr12	111350654	111350655	rs3782889	23364394	Lee JY	2013-01-31	J Hum Genet	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases, 3,591 Korean ancestry controls	3,052 Japanese ancestry cases, 4,976 Japanese ancestry controls	12q24.11	MYL2	rs3782889-C	0.21	4E-14		1.26	[1.19-1.34]	Affymetrix [521786]	N
1434	chr12	111352847	111352848	rs933296	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.11	NR	rs933296-C	NR	4E-14		0.0194	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1434	chr12	111353555	111353556	rs2301610	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	12q24.11	NR	rs2301610-?	NR	8E-7		1.7	[1.38-2.09]	Affymetrix [NR]	N
1434	chr12	111357470	111357471	rs17550549	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q24.11		rs17550549-C	0.7913	7E-6	(East Asian)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1434	chr12	111357470	111357471	rs17550549	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q24.11		rs17550549-?	0.8	2E-7	(East Asian)	1.098901	[1.05-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1434	chr12	111357470	111357471	rs17550549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.11	MYL2	rs17550549-T	0.1443	5E-11		0.0347	[0.024-0.045] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1434	chr12	111357470	111357471	rs17550549	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.11	NR	rs17550549-T	0.1631	2E-11	(men)	0.0524	[0.037-0.068] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1434	chr12	111357726	111357727	rs2040571	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	12q24.11	MYL2	rs2040571-?	NR	1E-12		0.04024	[0.029-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1434	chr12	111357726	111357727	rs2040571	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	12q24.11	MYL2	rs2040571-?	NR	3E-16		0.06156	[0.047-0.076] unit increase novel	Illumina [6108953] (imputed)	N
1434	chr12	111361297	111361298	rs12828640	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	12q24.11	NR	rs12828640-G		9E-6				Illumina [458525]	N
1434	chr12	111367243	111367244	rs12227162	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.11	MYL2, LINC01405	rs12227162-T	0.1325	2E-8		0.1479	[0.097-0.199] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1434	chr12	111373403	111373404	rs4426183	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.11	NR	rs4426183-T	0.428782	2E-11		0.0153237	[0.011-0.02] unit increase	Affymetrix [11535925] (imputed)	N
1434	chr12	111386126	111386127	rs2188380	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.11	NR	rs2188380-C	NR	1E-6		1.336	NR	Affymetrix [352228] (imputed)	N
1434	chr12	111386126	111386127	rs2188380	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.11	MYL2	rs2188380-T	0.82	2E-8	(Asian initial, BMI adjusted)	0.061	[0.039-0.083] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1434	chr12	111386126	111386127	rs2188380	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	12q24.11	MYL2	rs2188380-T	0.82	8E-9	(BMI adjusted)	0.071	[0.046-0.096] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1434	chr12	111386126	111386127	rs2188380	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	12q24.11	MYL2, CUX2	rs2188380-T	0.78	2E-23		1.75	[1.57-1.96]	Illumina [570442]	N
1434	chr12	111388300	111388301	rs193211023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	12q24.11		rs193211023-T	0.238472178	8E-11		0.08597489	[0.06-0.112] unit increase	Illumina [13134967] (imputed)	N
1434	chr12	111396248	111396249	rs11065783	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q24.11	LOC105369980	rs11065783-?	NR	4E-47		0.148787	[0.13-0.17] unit increase	Illumina [4804024] (imputed)	N
1434	chr12	111396248	111396249	rs11065783	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q24.11	LOC105369980	rs11065783-?	NR	3E-6		0.0666965	[0.039-0.095] unit increase	Illumina [19707525] (imputed)	N
1434	chr12	111396248	111396249	rs11065783	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	12q24.11		rs11065783-G	0.269047383	7E-14		1.3369094	[1.239013287-1.442540335]	Illumina [8919992] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.11	NR	rs12229654-G	0.26	4E-25		0.79	[0.74-0.84]	Affymetrix [NR]	N
1435	chr12	111414460	111414461	rs12229654	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.11	MYL2	rs12229654-?		1E-8				Affymetrix [at least 805769] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.11	Intergenic	rs12229654-G		1E-10		1.39		Illumina [31245]	N
1435	chr12	111414460	111414461	rs12229654	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Intracerebral hemorrhage	261 Japanese ancestry intracerebral hemorrhage cases, 176 Japanese ancestry subarachnoid hemorrhage cases, 5,742 Japanese ancestry controls	NA	12q24.11	NR	rs12229654-T	0.78	8E-6	(intracerebral)	1.69		Illumina [30970]	N
1435	chr12	111414460	111414461	rs12229654	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	12q24.11	MYL2	rs12229654-G	0.18	2E-48	(East Asian)	2.31		Affymetrix [NR] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q24.11	NR	rs12229654-A	0.82	1E-8		1.2658228	[NR]	Illumina [803202]	N
1435	chr12	111414460	111414461	rs12229654	25705158	Shim U	2014-12-31	Genomics Inform	Pathway Analysis of Metabolic Syndrome Using a Genome-Wide Association Study of Korea Associated Resource (KARE) Cohorts.	Metabolic syndrome	3,253 Korean ancestry cases, 5,589 Korean ancestry controls	NA	12q24.11	MYL2	rs12229654-?	NR	3E-6				Affymetrix [312121]	N
1435	chr12	111414460	111414461	rs12229654	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	12q24.11	MYL2	rs12229654-T	0.8	5E-9		0.0341	[0.023-0.045] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.11	MYL2	rs12229654-G		9E-13	(1-hPG)	0.277	[0.20-0.35] mmol-1 decrease	Affymetrix [357789]	N
1435	chr12	111414460	111414461	rs12229654	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.11	MYL2	rs12229654-G	0.14	3E-23		0.028	[0.023-0.033] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.11	MYL2	rs12229654-G	0.14	9E-58		0.0119	[0.011-0.013] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1435	chr12	111414460	111414461	rs12229654	21270382	Baik I	2011-01-26	Am J Clin Nutr	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry male individuals	1,113 Korean ancestry male individuals	12q24.11	MYL2	rs12229654-G	0.14	4E-35		0.79	[0.67-0.91] unit decrease	Affymetrix [315914]	N
1435	chr12	111429782	111429783	rs75218626	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	12q24.11		rs75218626-?	NR	2E-6		1.324	[1.178-1.489]	Affymetrix [7975321] (imputed)	N
1435	chr12	111438000	111438001	rs7304705	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.11		rs7304705-A	0.922	3E-27				Affymetrix [10369434] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.11	CUX2	rs11830764-G	0.932095	6E-46		0.0144493	[0.012-0.016] unit decrease	Affymetrix [13995440] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	12q24.11	NR	rs11830764-C	0.06772199999999995	3E-9		0.0149059	[0.0099-0.0199] unit increase	Affymetrix [16578495] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.11	NR	rs11830764-C	0.06786599999999998	2E-109		0.0358392	[0.033-0.039] unit increase	Affymetrix [16582909] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q24.11	NR	rs11830764-C	0.06762599999999996	9E-68		0.041525	[0.037-0.046] unit increase	Affymetrix [16585854] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.11	NR	rs11830764-C	0.06786599999999998	4E-81		0.0346407	[0.031-0.038] unit increase	Affymetrix [16582965] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q24.11	NR	rs11830764-C	0.06762599999999996	4E-46		0.0398389	[0.034-0.045] unit increase	Affymetrix [16585866] (imputed)	N
1435	chr12	111515019	111515020	rs11830764	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	12q24.11	NR	rs11830764-?	NR	2E-29		0.06902	[0.057-0.081] unit increase novel	Illumina [6108953] (imputed)	N
1435	chr12	111518492	111518493	rs78572043	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.11		rs78572043-A	NR	5E-20	(East Asian)			Affymetrix [NR] (imputed)	N
1435	chr12	111521999	111522000	rs16941230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.11	NR	rs16941230-C	NR	2E-27		0.0735	[0.06-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1435	chr12	111521999	111522000	rs16941230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.11	NR	rs16941230-C	NR	6E-14		0.0487	[0.036-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1435	chr12	111521999	111522000	rs16941230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.11	NR	rs16941230-C	NR	1E-13		0.0481	[0.035-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.11	NR	rs7314285-G	0.06832000000000005	9E-12		0.0389623	[0.027-0.051] unit increase	Affymetrix [16577313] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q24.11	NR	rs7314285-G	0.06850299999999998	4E-50		0.0307382	[0.026-0.035] unit increase	Affymetrix [16582621] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q24.11	NR	rs7314285-G	0.06850299999999998	2E-41		0.0301165	[0.025-0.035] unit increase	Affymetrix [16582614] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q24.11	NR	rs7314285-T	0.931765	2E-10		0.0254155	[0.018-0.033] unit increase	Affymetrix [16583148] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q24.11	NR	rs7314285-T	0.931867	1E-13		0.0375233	[0.028-0.047] unit increase	Affymetrix [16585745] (imputed)	N
1435	chr12	111522025	111522026	rs7314285	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.11	NR	rs7314285-T	0.931885	5E-8		0.0215713	[0.014-0.029] unit increase	NR [NR]	N
1436	chr12	111546164	111546165	rs10774613	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	12q24.11	CCDC63, CUX2, ATXN2	rs10774613-T	0.56	2E-6	(EA)	0.03	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1436	chr12	111582606	111582607	rs76892715	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-hip ratio	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.11	CUX2	rs76892715-C	0.164	5E-19	(male)	0.001	[-0.00096-0.00296] unit decrease	NR [8056211] (imputed)	N
1436	chr12	111582629	111582630	rs73413596	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	12q24.11		rs73413596-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1436	chr12	111582629	111582630	rs73413596	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q24.11		rs73413596-?	NR	9E-9		0.0223468	[0.015-0.03] unit increase	NR [6912294] (imputed)	N
1436	chr12	111582629	111582630	rs73413596	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	12q24.11		rs73413596-T	0.926146	1E-9		0.023	[0.015-0.031] unit increase	NR [7250403] (imputed)	N
1436	chr12	111586425	111586426	rs4766540	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.11		rs4766540-A	0.879	2E-13				Affymetrix [10369434] (imputed)	N
1436	chr12	111586425	111586426	rs4766540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.11	NR	rs4766540-G	NR	2E-12		0.0265	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1436	chr12	111586425	111586426	rs4766540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.11	NR	rs4766540-G	NR	2E-11		0.0251	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1436	chr12	111586425	111586426	rs4766540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.11	NR	rs4766540-G	NR	4E-11		0.0237	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1436	chr12	111589066	111589067	rs147032946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.11		rs147032946-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1436	chr12	111589066	111589067	rs147032946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.11		rs147032946-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1436	chr12	111590491	111590492	rs4766542	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.11		rs4766542-T	0.848	1E-20				Affymetrix [10369434] (imputed)	N
1436	chr12	111598013	111598014	rs75415884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.11	NR	rs75415884-T	NR	2E-10		0.0496	[0.034-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1436	chr12	111600133	111600134	rs11065822	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	12q24.11	NR	rs11065822-G	0.63	6E-9		1.0416667	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1436	chr12	111603824	111603825	rs73415912	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.11	CUX2	rs73415912-T		1E-11		0.021	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1436	chr12	111608245	111608245	rs66614071	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.11	CUX2	rs66614071-?		3E-9		0.69	[0.61-0.78]	Illumina [9899436] (imputed)	N
1436	chr12	111609726	111609727	rs3809297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	12q24.11		rs3809297-T	0.239524	4E-19		0.0506272	[0.04-0.062] unit increase	Illumina [13467171] (imputed)	N
1436	chr12	111609726	111609727	rs3809297	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.11		rs3809297-G	NR	3E-11	(East Asian)			Affymetrix [NR] (imputed)	N
1436	chr12	111609726	111609727	rs3809297	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.11	NR	rs3809297-T	NR	5E-7		1.326	NR	Affymetrix [352228] (imputed)	N
1436	chr12	111609726	111609727	rs3809297	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	12q24.11		rs3809297-T	0.221752456	4E-15		0.8917164	[0.866618456-0.917541208]	Illumina [8919992] (imputed)	N
1436	chr12	111609726	111609727	rs3809297	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q24.11	NR	rs3809297-T	0.2427	2E-11	(East Asian)	0.4244	[0.3-0.55] unit decrease	Illumina [6200000] (imputed)	N
1436	chr12	111613104	111613105	rs138649655	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q24.11	CUX2	rs138649655-T	0.0119848868814184	2E-6	(G_Gemmiger_HB)	1.48585	[0.88-2.09] unit decrease	Illumina [7711310] (imputed)	N
1436	chr12	111629388	111629389	rs11065828	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp	4,447 East Asian ancestry cases, 157,226 East Asian ancestry controls	NA	12q24.11		rs11065828-?	NR	1E-15		0.8	[0.77-0.84]	Illumina [8624880] (imputed)	N
1436	chr12	111629388	111629389	rs11065828	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	12q24.11		rs11065828-?	NR	6E-8		0.6983	[0.6132-0.7952]	Affymetrix [7975321] (imputed)	N
1436	chr12	111650338	111650339	rs10774614	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	12q24.11		rs10774614-A	0.867	9E-12				Affymetrix [10369434] (imputed)	N
1436	chr12	111662577	111662578	rs10744770	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	12q24.11	CUX2	rs10744770-?	0.21	1E-7		23.4	unit decrease	Illumina [120975] (imputed)	N
1436	chr12	111670681	111670682	rs4766451	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	12q24.11	CUX2	rs4766451-?	0.22	2E-7		23.46	unit decrease	Illumina [120975] (imputed)	N
1437	chr12	111679213	111679214	rs886126	23364394	Lee JY	2013-01-31	J Hum Genet	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases, 3,591 Korean ancestry controls	3,052 Japanese ancestry cases, 4,976 Japanese ancestry controls	12q24.11	CUX2	rs886126-T	0.66	1E-6		1.14	[1.08-1.20]	Affymetrix [521786]	N
1437	chr12	111692123	111692124	rs4766453	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q24.11	NR	rs4766453-A	0.47	8E-6		1.14		Illumina [803202]	N
1437	chr12	111696527	111696528	rs2339717	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q24.11	CUX2	rs2339717-T	0.6345	9E-8		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1437	chr12	111696527	111696528	rs2339717	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	12q24.11	CUX2	rs2339717-T	0.3497	3E-10		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1437	chr12	111704438	111704439	rs2157999	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	12q24.11	CUX2	rs2157999-A	0.078	4E-16		0.35	[0.27-0.44] unit decrease	Affymetrix [339439]	N
1437	chr12	111705892	111705893	rs3858704	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q24.11	CUX2	rs3858704-A	0.66	3E-13		1.06	[0.96-1.17]	Illumina [5167567] (imputed)	N
1437	chr12	111705892	111705893	rs3858704	29118346	Sakamoto Y	2017-11-08	Sci Rep	Genome-wide Association Study of Idiopathic Osteonecrosis of the Femoral Head.	Idiopathic osteonecrosis of the femoral head	1,547 Japanese ancestry cases, 59,103 Japanese ancestry controls	NA	12q24.11	CUX2	rs3858704-?	0.672	3E-12		1.33		Illumina [525208]	N
1437	chr12	111706675	111706676	rs76721774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.11		rs76721774-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1437	chr12	111706876	111706877	rs4766566	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	12q24.11	CUX2	rs4766566-C	0.33	2E-25		1.24	[1.19-1.29]	Illumina [5932413] (imputed)	N
1437	chr12	111706876	111706877	rs4766566	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q24.11	CUX2	rs4766566-T	0.6755	7E-40	(Japanese)	0.0558	[0.048-0.064] unit increase	Illumina [1986983] (imputed)	N
1437	chr12	111706876	111706877	rs4766566	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q24.11	NR	rs4766566-?	NR	2E-12		0.03172	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111706876	111706877	rs4766566	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	12q24.11	CUX2	rs4766566-T	0.68	7E-6	(Japanese)	1.11	[1.062-1.162]	Illumina [5018049] (imputed)	N
1437	chr12	111706876	111706877	rs4766566	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	12q24.11	CUX2	rs4766566-T	0.633	2E-18		1.6	[1.44-1.78]	Illumina [570442]	N
1437	chr12	111706876	111706877	rs4766566	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal overload gout	560 Japanese ancestry cases, 1,213 Japanese ancestry controls	618 Japanese ancestry cases, 1,268 Japanese ancestry controls	12q24.11	CUX2	rs4766566-T	0.633	8E-17		1.59	[1.43-1.78]	Illumina [570442]	N
1437	chr12	111706876	111706877	rs4766566	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	12q24.11	CUX2	rs4766566-T	0.633	4E-20	(Japanese)	1.51	[1.38-1.65]	Illumina [570442]	N
1437	chr12	111708457	111708458	rs1265564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q24.11		rs1265564-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1437	chr12	111708457	111708458	rs1265564	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.11	CUX2	rs1265564-A	0.59	2E-13	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1437	chr12	111708457	111708458	rs1265564	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.11	CUX2	rs1265564-A	0.59	2E-8	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1437	chr12	111708457	111708458	rs1265564	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.11	NR	rs1265564-A	0.557672	6E-9		0.0133386	[0.0088-0.0178] unit decrease	Affymetrix [11535925] (imputed)	N
1437	chr12	111708457	111708458	rs1265564	22293688	Huang J	2012-02-01	Eur J Hum Genet	1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.	Type 1 diabetes	16,179 European ancestry individuals	NA	12q24.11	CUX2	rs1265564-?	NR	1E-16		1.45	[1.28-1.67]	NR [6233112] (imputed)	N
1437	chr12	111715196	111715197	rs1265565	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	12q24.11	CUX2	rs1265565-T	0.3392	3E-8		0.07	NR SD units increase	Illumina [21568490] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	1E-16		0.0212	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	3E-12		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	4E-11		0.0176	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	2E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	4E-14		0.0209	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111716375	111716376	rs1265566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.11	NR	rs1265566-T	NR	2E-52		0.0388	[0.034-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.11	CUX2	rs79105258-C	0.158	3E-19	(male)	0.01	[0.008-0.012] unit decrease	NR [8056211] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.11	CUX2	rs79105258-?		3E-9		0.75	[0.69-0.83]	Illumina [9899436] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?		6E-19		0.0598	[0.047-0.073] unit decrease	Illumina [31500000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?		1E-70		0.1239	[0.11-0.14] unit increase	Illumina [31500000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?		7E-87		0.1072	[0.097-0.118] unit increase	Illumina [31500000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?		9E-24		0.0498	[0.04-0.06] unit increase	Illumina [31500000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?		2E-27		0.0544	[0.045-0.064] unit increase	Illumina [31500000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.11	NR	rs79105258-A	NR	4E-7		1.338	NR	Affymetrix [352228] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.11	CUX2	rs79105258-A	0.1795	3E-9		0.1367	[0.092-0.182] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	12q24.11	CUX2	rs79105258-A	0.26	7E-32		1.31	[1.25-1.37]	Illumina [5932413] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.11	CUX2	rs79105258-A	0.2488	2E-41	(East Asian)	0.0969	[0.083-0.111] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	31345160	Jia H	2019-07-26	BMC Genet	GWAS of habitual coffee consumption reveals a sex difference in the genetic effect of the 12q24 locus in the Japanese population.	Coffee consumption	6,264 Japanese ancestry individuals	5,975 Japanese ancestry individuals	12q24.11	CUX2	rs79105258-A	0.283	1E-14		0.173	[0.13-0.22] unit increase	Illumina [5264155] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	12q24.11	CUX2, ALDH2	rs79105258-A	0.257	5E-17		0.055	[-0.12728-0.23728] unit increase	Illumina [5961480] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	58,784 Japanese ancestry males	NA	12q24.11	CUX2, ALDH2	rs79105258-A	0.257	9E-18		0.062	[-0.17124-0.29524] unit increase	Illumina [6108828] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	12q24.11	CUX2	rs79105258-A	0.254	2E-56	(Japanese)	0.078	[0.068-0.088] unit decrease	Illumina [5864938] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	12q24.11	CUX2	rs79105258-A	0.23	6E-15		1.263	[0.65-1.88] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.11	NR	rs79105258-A	0.2515	1E-38	(East Asian)	1.0576	[0.9-1.22] unit decrease	Illumina [6200000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q24.11	CUX2	rs79105258-A	0.2518	1E-14	(Japanese)	0.498	[0.37-0.62] unit decrease	Illumina [6200000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.11	CUX2	rs79105258-A	0.2516	1E-44	(East Asian)	0.8023	[0.69-0.91] unit decrease	Illumina [6200000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q24.11	CUX2	rs79105258-A	0.2526	9E-31	(East Asian)	0.1707	[0.14-0.2] unit decrease	Illumina [6200000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.11	CUX2	rs79105258-A	0.2519	6E-39	(East Asian)	0.6699	[0.57-0.77] unit decrease	Illumina [6200000] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	2E-42		0.06463	[0.055-0.074] unit decrease	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-9		0.02995	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	8E-51		0.07856	[0.068-0.089] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-29		0.05973	[0.049-0.07] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-12		0.0334	[0.024-0.043] unit decrease	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	9E-58		0.08474	[0.074-0.095] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	2E-24		0.05405	[0.044-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	7E-80		0.1001	[0.09-0.11] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	9E-47		0.06847	[0.059-0.078] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	3E-20		0.05977	[0.047-0.072] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	2E-80		0.1239	[0.11-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	4E-22		0.04508	[0.036-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-99		0.1072	[0.097-0.117] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	3E-39		0.062	[0.053-0.071] unit decrease	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	7E-24		0.04589	[0.037-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	4E-14		0.03765	[0.028-0.047] unit increase	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-25		0.04625	[0.038-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-10		0.03723	[0.026-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-26		0.04981	[0.041-0.059] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	1E-30		0.05442	[0.045-0.064] unit decrease	Illumina [6108953] (imputed)	N
1437	chr12	111718230	111718231	rs79105258	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	12q24.11	CUX2	rs79105258-?	NR	2E-8		0.0517	[0.034-0.07] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr12	111718381	111718382	rs11611512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.11	NR	rs11611512-A	NR	4E-9		0.0471	[0.031-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr12	111724698	111724699	rs4766568	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q24.11	CUX2	rs4766568-T	0.86	2E-18		8.74	z-score increase	Affymetrix [4314223] (imputed)	N
1437	chr12	111730208	111730209	rs184099148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.11		rs184099148-T	0.953	4E-8				Affymetrix [10369434] (imputed)	N
1437	chr12	111732403	111732404	rs183439466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.11		rs183439466-A	0.933	2E-12				Affymetrix [10369434] (imputed)	N
1437	chr12	111746597	111746598	rs41455646	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	12q24.12		rs41455646-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1437	chr12	111746677	111746678	rs3847952	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	NR	rs3847952-?	NR	5E-8		0.0099741	[0.0064-0.0136] unit decrease	Affymetrix [805426] (imputed)	N
1437	chr12	111761894	111761895	rs150481160	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs150481160-C	0.967	6E-20				Affymetrix [10369434] (imputed)	N
1437	chr12	111766315	111766316	rs79592135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.12	NR	rs79592135-C	NR	3E-9		0.0252	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr12	111766315	111766316	rs79592135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.12	NR	rs79592135-C	NR	4E-11		0.0279	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr12	111766315	111766316	rs79592135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs79592135-C	NR	3E-18		0.0369	[0.029-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1437	chr12	111773344	111773345	rs6490061	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	12q24.12	NR	rs6490061-C	NR	3E-8		1.1049724		Illumina [6573681] (imputed)	N
1437	chr12	111785585	111785586	rs3803167	33093602	Chen IC	2020-10-22	Sci Rep	CUX2, BRAP and ALDH2 are associated with metabolic traits in people with excessive alcohol consumption.	Excessive alcohol consumption	1,945 Taiwanese cases, 16,418 Taiwanese controls	NA	12q24.12	NR	rs3803167-?	NR	5E-8				Affymetrix [6410722] (imputed)	N
1437	chr12	111792426	111792427	rs10849937	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	12q24.12	NR	rs10849937-?	NR	7E-12		0.05191228	NR unit increase	Affymetrix [464137]	N
1437	chr12	111800257	111800258	rs3809272	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	12q24.12	NR	rs3809272-A	0.3052	7E-17		0.02337	[0.018-0.029] unit decrease	Affymetrix [3505788] (imputed)	N
1437	chr12	111800257	111800258	rs3809272	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.12	NR	rs3809272-G	0.697024	4E-10		0.0195579	[0.013-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1437	chr12	111800257	111800258	rs3809272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	FAM109A	rs3809272-A	0.3039	4E-126		0.0945364	[0.087-0.102] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1437	chr12	111802274	111802275	rs145406238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.12		rs145406238-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1438	chr12	111808741	111808742	rs181707610	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q24.12		rs181707610-C	0.992	7E-21				Affymetrix [10369434] (imputed)	N
1438	chr12	111810661	111810662	rs749043255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	12q24.12	RP3-473L9.4	rs749043255-A	0.0011	8E-6		1.4816	[0.83-2.13] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1438	chr12	111811473	111811474	rs117829767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs117829767-C	0.967	5E-10				Affymetrix [10369434] (imputed)	N
1438	chr12	111826477	111826477	rs111338191	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	12q24.12		rs111338191-A	0.7184	5E-9		0.0756	[0.05-0.101] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111826477	111826477	rs111338191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12q24.12	RP3-473L9.4	rs111338191-AAATT	0.5197	8E-46		0.05131538	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111826477	111826477	rs111338191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12q24.12	RP3-473L9.4	rs111338191-AAATT	0.5198	2E-31		0.04198339	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	12q24.12		rs10774624-G	0.49	2E-9		1.14	[1.1-1.19]	Illumina [NR] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12q24.12	SH2B3	rs10774624-A	0.5231	4E-14		0.0093	[0.0068-0.0118] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	12q24.12		rs10774624-G	0.4	2E-8		1.11	[1.07-1.15]	Illumina [11796347] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	12q24.12		rs10774624-A	0.53	8E-19		0.0739	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	12q24.12		rs10774624-A	0.53	6E-19		0.0718	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.12		rs10774624-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.12	SH2B3	rs10774624-G	0.6576	3E-19		0.481	[0.38-0.59] mmHg decrease	Affymetrix [NR] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q24.12	SH2B3, PTPN11	rs10774624-A	NR	8E-8		0.17559	[-0.06944-0.42062] unit decrease	Illumina [8380626] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	12q24.12	SH2B3, PTPN11	rs10774624-A	0.51	2E-7	(EA)	0.08647	[0.054-0.119] unit decrease	Illumina [8380626] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	12q24.12	SHB3/ATXN2	rs10774624-G	0.485	3E-10		0.082	[0.057-0.107] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	12q24.12	NR	rs10774624-G	NR	9E-6		0.1056	[0.059-0.152] SD units increase	NR [10700000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	12q24.12	NR	rs10774624-G		7E-6		0.1069	[0.06-0.154] SD units increase	NR [10700000] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	12q24.12	SH2B3, ATXN2	rs10774624-G	0.5048	6E-23		1.2693577	[1.2-1.33]	Illumina [8966411] (imputed)	N
1438	chr12	111833787	111833788	rs10774624	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	12q24.12	SH2B3, PTPN11	rs10774624-G	0.5	7E-9	(EA)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1438	chr12	111834746	111834747	rs146820492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.12		rs146820492-C	0.976	2E-8				Affymetrix [10369434] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	5E-8				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	2E-19	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	1E-7				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?		1E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	8E-13				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	1E-26	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	6E-12				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111835989	111835990	rs4375492	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.12	FAM109A, SH2B3, ATXN2	rs4375492-?	NR	3E-23	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	12q24.12		rs149212747-?	NR	5E-9		1.15	[1.09-1.21]	Illumina [NR] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q24.12		rs149212747-AC	NR	4E-10		0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.12	LINC02356	rs149212747-?		9E-10		1.38	[1.25-1.54]	Illumina [9899436] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q24.12	SH2B3, ALDH2	rs149212747-A	0.795	2E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	12q24.12	BRAP, ALDH2, ACAD10, NAA25, TRAFD1, HECTD4, PTPN11, RIMBP2	rs149212747-A	0.9097	6E-10		0.91	[0.62-1.20] unit increase	Illumina [at least 4683137] (imputed)	N
1438	chr12	111836771	111836771	rs149212747	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	12q24.12	ALDH2, ACAD10, BRAP, TRAFD1, HECTD4, PTPN11, NAA25, CUX2, RPH3A, MYL2	rs149212747-A	0.9104	2E-12		0.5885	[0.43-0.75] unit increase	Illumina [at least 4683137] (imputed)	N
1438	chr12	111844217	111844218	rs3742003	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	12q24.12		rs3742003-A	0.6279	7E-10		0.061	[0.042-0.08] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111844217	111844218	rs3742003	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	12q24.12		rs3742003-A	0.3294	6E-6		0.0531	[0.03-0.076] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111844217	111844218	rs3742003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q24.12	SH2B3	rs3742003-A	0.211145	2E-36		0.034780454	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q24.12		rs540639423-T	NR	6E-32		0.1688	[0.14-0.2] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q24.12		rs540639423-T	NR	7E-12		0.0972	[0.069-0.125] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.12	SH2B3	rs540639423-T	0.00819800000000004	2E-29		0.14493877	[0.12-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs540639423-T	0.00820100000000002	2E-32		0.15252708	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q24.12	SH2B3	rs540639423-T	0.0084	6E-12		0.1450696	[0.1-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111844955	111844956	rs540639423	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q24.12	SH2B3	rs540639423-T	0.0084	3E-12		0.1475875	[0.11-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111847739	111847740	rs3803170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q24.12	SH2B3	rs3803170-G	0.2099	4E-9		0.02577288	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111849514	111849515	rs7309325	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q24.12		rs7309325-G	0.79	3E-45				Affymetrix [10369434] (imputed)	N
1438	chr12	111855295	111855296	rs530225620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.12		rs530225620-T	0.883896	1E-10		0.0432689	[0.03-0.056] unit increase	NR [11722792] (imputed)	N
1438	chr12	111855295	111855296	rs530225620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.12		rs530225620-T	0.883896	2E-8		0.0375204	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111855295	111855296	rs530225620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.12		rs530225620-T	0.883896	8E-10		0.0408666	[0.028-0.054] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111855295	111855296	rs530225620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.12		rs530225620-T	0.883896	5E-10		0.041354	[0.028-0.054] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111856180	111856181	rs754838420	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	12q24.12		rs754838420-?	NR	3E-52		0.426756	[0.37-0.48] unit increase	NR [9800000] (imputed)	N
1438	chr12	111856180	111856181	rs754838420	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	12q24.12		rs754838420-?	NR	1E-24		0.299152	[0.24-0.36] unit increase	NR [9800000] (imputed)	N
1438	chr12	111856672	111856673	rs78894077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	12q24.12		rs78894077-T	0.03782	2E-13		0.0990214	[0.073-0.125] unit increase	Illumina [13471431] (imputed)	N
1438	chr12	111856672	111856673	rs78894077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	12q24.12	NR	rs78894077-C	0.965786	1E-15		0.138226	[0.1-0.17] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
1438	chr12	111856672	111856673	rs78894077	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	12q24.12	SH2B3	rs78894077-?		4E-9		1.32	[1.20-1.45]	Illumina [NR] (imputed)	N
1438	chr12	111856672	111856673	rs78894077	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q24.12		rs78894077-?	0.94	6E-6	(East Asian, joint analysis)	1.1764705	[1.1-1.27]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1438	chr12	111857486	111857487	rs2078863	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.12		rs2078863-T	NR	5E-10	(East Asian)			Affymetrix [NR] (imputed)	N
1438	chr12	111862574	111862575	rs11065898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.12	SH2B3	rs11065898-T	NR	3E-9		0.0201346	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
1438	chr12	111862574	111862575	rs11065898	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	12q24.12	SH2B3	rs11065898-T	0.216	5E-8		1.11		Illumina [128935]	N
1438	chr12	111862574	111862575	rs11065898	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	12q24.12	SH2B3	rs11065898-T	0.216	2E-7	(EA)	1.13		Illumina [128935]	N
1438	chr12	111865048	111865049	rs7310615	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THPO	5,364 Icelandic ancestry individuals	NA	12q24.12		rs7310615-C	0.3845	5E-17		0.164514	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	2E-56		0.0367	[0.032-0.041] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	5E-72		0.0418	[0.037-0.046] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q24.12		rs7310615-G	NR	5E-16		0.0644	[0.049-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	12q24.12		rs7310615-G	NR	8E-22		0.0797	[0.063-0.096] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q24.12		rs7310615-G	NR	3E-27		0.0657	[0.054-0.078] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	7E-260		0.0822	[0.077-0.087] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	6E-35		0.0286	[0.024-0.033] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	1E-148		0.0494	[0.046-0.053] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	4E-298		0.0652	[0.062-0.069] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q24.12		rs7310615-G	NR	2E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	12q24.12	SH2B3, ATXN2	rs7310615-C	0.4768	3E-19		1.27	1.21-1.34	Affymetrix [6845584] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular end-diastolic volume	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	12q24.12	SH2B3	rs7310615-?	NR	5E-16				Affymetrix [13660711] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	12q24.12	NR	rs7310615-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q24.12	SH2B3	rs7310615-C	0.48155	5E-16		0.064379096	[0.049-0.08] unit increase	Affymetrix [7288503] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	12q24.12	SH2B3	rs7310615-C	0.482401	8E-22		0.07970556	[0.063-0.096] unit increase	Affymetrix [7288503] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q24.12	SH2B3	rs7310615-C	0.484183	3E-27		0.06573246	[0.054-0.078] unit increase	Affymetrix [7288503] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.12	SH2B3	rs7310615-G	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.12	SH2B3	rs7310615-G	NR	2E-11				Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.12	SH2B3	rs7310615-G	NR	2E-12				Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.12	SH2B3	rs7310615-G	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.12	SH2B3	rs7310615-G	NR	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.12	SH2B3	rs7310615-G	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.12	SH2B3	rs7310615-G	NR	5E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.12	SH2B3	rs7310615-G	NR	2E-9				Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.12	SH2B3	rs7310615-G	NR	3E-6		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	12q24.12		rs7310615-?	NR	2E-76				NR [~ 8900000] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.12	SH2B3	rs7310615-C	0.49	3E-30	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	SH2B3	rs7310615-C	0.5	4E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	SH2B3	rs7310615-C	0.49	3E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	SH2B3	rs7310615-C	0.45	2E-20	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	SH2B3	rs7310615-C	0.5	5E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	SH2B3	rs7310615-C	0.49	7E-58	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111865048	111865049	rs7310615	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	12q24.12	SH2B3	rs7310615-C	0.5	2E-13		0.0069	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1438	chr12	111867292	111867293	rs61944375	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs61944375-A	0.981	4E-14				Affymetrix [10369434] (imputed)	N
1438	chr12	111871140	111871141	rs4766462	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q24.12	SH2B3	rs4766462-A	0.79	1E-26		10.7	z-score increase	Affymetrix [4312306] (imputed)	N
1438	chr12	111871140	111871141	rs4766462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q24.12	NR	rs4766462-T	0.210504	3E-33		0.028416	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1438	chr12	111872721	111872722	rs12371484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.12	NR	rs12371484-C	NR	4E-10		0.0338	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1438	chr12	111873166	111873167	rs2239196	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs2239196-G	0.96	3E-47				Affymetrix [10369434] (imputed)	N
1438	chr12	111873166	111873167	rs2239196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.12	SH2B3	rs2239196-A	0.03995	7E-77		0.11294513	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111878525	111878526	rs7296313	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Reaction time	111,483 European ancestry individuals	NA	12q24.12	SH2B3	rs7296313-?	NR	1E-8		0.0296961	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	12q24.12		rs3184504-T	0.483377	2E-11		0.028061	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL11	5,364 Icelandic ancestry individuals	NA	12q24.12		rs3184504-T	0.3861	4E-18		0.168607	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	12q24.12		rs3184504-T	0.46	7E-6		1.09	[1.06-1.13]	Illumina [NR] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q24.12		rs3184504-C	NR	2E-157		0.0635	[0.059-0.068] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.12		rs3184504-C	NR	4E-14		0.1433	[0.11-0.18] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q24.12		rs3184504-C	NR	4E-72		0.0366	[0.033-0.041] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q24.12		rs3184504-C	NR	7E-379		0.096	[0.091-0.101] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q24.12		rs3184504-C	NR	5E-37		0.0302	[0.025-0.035] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	12q24.12		rs3184504-C	NR	9E-113		0.2052	[0.19-0.22] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q24.12		rs3184504-C	NR	8E-65		0.1734	[0.15-0.19] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.12		rs3184504-C	NR	1E-129		0.0471	[0.043-0.051] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q24.12		rs3184504-C	NR	1E-25		0.179	[0.15-0.21] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs3184504-T	0.484	8E-263				Affymetrix [10369434] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	12q24.12		rs3184504-T	0.484	1E-55				Affymetrix [10369434] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12q24.12		rs3184504-T	0.484	7E-75				Affymetrix [10369434] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.12		rs3184504-T	0.484	2E-184				Affymetrix [10369434] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	12q24.12		rs3184504-T	0.484	4E-82				Affymetrix [10369434] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	12q24.12	SH2B3	rs3184504-?	NR	1E-18		0.0024	[0.0018-0.003] unit increase	Affymetrix [21347608] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	12q24.12	SH2B3	rs3184504-?	NR	2E-34		0.0051	[0.0043-0.0059] unit increase	Affymetrix [21347608] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.12	SH2B3	rs3184504-T	NR	2E-14		0.0215759	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.483255	6E-31		0.0045174	[0.0038-0.0053] unit increase	Affymetrix [13995440] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5217	2E-6		0.6371	[0.38-0.9] unit increase	Affymetrix [~ 9500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume	19,260 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5217	1E-10		1.4676	[1.02-1.92] unit increase	Affymetrix [~ 9500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.483	3E-22		0.0183	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12q24.12	SH2B3	rs3184504-T	0.483	1E-12		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12q24.12	SH2B3	rs3184504-T	0.483	2E-11		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	12q24.12		rs3184504-T	0.46	6E-16		0.0713	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs3184504-C	0.5303899999999999	3E-8		0.1468	[0.095-0.198] unit decrease	Illumina [18427377] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Central Memory CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs3184504-C	0.5291600000000001	3E-9		0.1609	[0.11-0.21] unit decrease	Illumina [18332267] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs3184504-C	0.53053	8E-12		0.1838	[0.13-0.24] unit decrease	Illumina [18427348] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs3184504-C	0.52955	5E-8		0.1576	[0.1-0.21] unit decrease	Illumina [17945511] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518653	2E-228		0.071312614	[0.067-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518644	3E-90		0.047382593	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518634	2E-125		0.056037392	[0.051-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518647	8E-108		0.048832715	[0.044-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518709	2E-775		0.16059181	[0.16-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518691	5E-616		0.15463974	[0.15-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518633	5E-47		0.03193862	[0.028-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-T	0.481392	2E-105		0.04851156	[0.044-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518647	3E-378		0.091698095	[0.087-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518662	9E-31		0.026873576	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518687	6E-85		0.04575688	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.51868	1E-114		0.053265437	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518629	6E-117		0.059101954	[0.054-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.51864	2E-184		0.06413913	[0.06-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518611	3E-480		0.10407797	[0.1-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518706	5E-37		0.028242147	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.624937	8E-290				Affymetrix, Illumina [24649327] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.517084	4E-293		0.067191	[0.064-0.071] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.592435	7E-49				Affymetrix, Illumina [23114412] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.517462	2E-52		0.029388	[0.026-0.033] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.598619	1E-136				Affymetrix, Illumina [23467995] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.517396	2E-139		0.047075	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.599902	2E-39				Affymetrix, Illumina [19905671] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q24.12	NR	rs3184504-C	0.518576	5E-43		0.02822	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.48	4E-10		0.03	[0.02-0.04] unit increase	NR [NR]	N
1438	chr12	111884607	111884608	rs3184504	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.518234452758415	7E-11		0.0298	[0.021-0.039] SD decrease	Illumina [22400000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	0.464	9E-116		1.23	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		3E-175		0.061	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.482676	4E-44		0.0265573	[0.023-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.482682	3E-17		0.0166019	[0.013-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Small vessel stroke (CCSp classification)	2,419 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	7E-7		1.1068798	[1.063-1.152]	Illumina [~ 10156805] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Small vessel stroke (CCS or TOAST classification)	3,480 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	2E-6		1.0874183	[1.050-1.125]	Illumina [~ 10156805] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.48	2E-7				Affymetrix, Illumina [8002429] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	12q24.12	SH2B3	rs3184504-C	0.52	6E-9		1.0638298	NR	Affymetrix, Illumina [8002429] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q24.12	SH2B3	rs3184504-T	NR	4E-11		1.0643	NR	Affymetrix, Illumina [8278136] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	12q24.12	NR	rs3184504-?	NR	5E-6		2.984297	[1.7-4.27] unit decrease	Illumina [30743395] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	12q24.12	NR	rs3184504-?	NR	8E-8		0.6357937	[0.4-0.87] unit decrease	Illumina [32101933] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	12q24.12	SH2B3	rs3184504-C	0.517856	1E-33		0.036552	[0.031-0.042] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q24.12	SH2B3	rs3184504-C	0.520699	3E-19		0.022966	[0.018-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	0.484908	1E-112		0.2052065	[0.19-0.22] unit increase	Affymetrix [7288503] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	0.481977	2E-12		0.056394443	[0.041-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.12		rs3184504-?	NR	8E-222				NR [~ 8900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.12		rs3184504-?	NR	1E-102				NR [~ 8900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q24.12		rs3184504-?	NR	1E-114				NR [~ 8900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.12		rs3184504-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.12		rs3184504-?	NR	3E-34				NR [~ 8900000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.12	SH2B3	rs3184504-T	0.4816	2E-9		0.1536	[0.1-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	0.49	1E-31		1.3109596		Illumina [252970]	N
1438	chr12	111884607	111884608	rs3184504	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?		1E-17		1.1699768		Illumina [252970]	N
1438	chr12	111884607	111884608	rs3184504	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes vs. type 2 diabetes	2,779 European ancestry latent autoimmune diabetes cases, 10,396 European ancestry type 2 diabetes cases	NA	12q24.12	SH2B3	rs3184504-?	0.52	2E-8		1.24	[1.151-1.336]	Affymetrix, Illumina [8328843] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.12	NR	rs3184504-T	NR	6E-9		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-C	0.515767	6E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-C	0.52	1E-10		1.1	[1.07-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	12q24.12	NR	rs3184504-C	0.536	2E-10	(EA)	1.0752687	[1.05-1.1]	Affymetrix, Illumina [12931465] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.517	2E-14	(Vascular cell adhesion protein 1, VCAM1.2967.8.1)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	12q24.12	SH2B3	rs3184504-?	NR	9E-12				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	6E-12				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	12q24.12	SH2B3	rs3184504-?	NR	6E-6				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	12q24.12	SH2B3	rs3184504-?	NR	4E-6				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	12q24.12	SH2B3	rs3184504-?	NR	2E-14				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	1E-14				NR [~ 8000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	NR	2E-14		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	0.495	6E-14	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	NR	2E-12		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	0.495	2E-12	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	NR	9E-12		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs3184504-T	0.495	2E-11	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q24.12	SH2B3, ATXN2	rs3184504-?	NR	3E-36				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q24.12	SH2B3, ATXN2	rs3184504-?		6E-67				Affymetrix, Illumina [18800000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	12q24.12	SH2B3	rs3184504-A	0.462	4E-7	(any IA)	1.35		Illumina [131847]	N
1438	chr12	111884607	111884608	rs3184504	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q24.12	SH2B3	rs3184504-C	0.5548	7E-12		0.0129	[0.0092-0.0166] unit increase	Illumina [246328]	N
1438	chr12	111884607	111884608	rs3184504	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's age at death)	317,652 British ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs3184504-T	0.483	4E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix [11535925] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q24.12	ATXN2, SH2B3	rs3184504-T	0.4721	5E-30		0.0742	[0.061-0.087] unit increase	NR [8041861] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	0.5	3E-10		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q24.12	SH2B3	rs3184504-C	0.523	2E-17	(EA, initial)	0.629	[0.48-0.77] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	12q24.12	SH2B3	rs3184504-C	0.523	3E-24	(EA, initial)	0.457	[0.37-0.55] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.3793	1E-8	(Recessive)	0.11	NR SD units increase	Illumina [21568490] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (eosinophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	12q24.12	NR	rs3184504-T	0.27	2E-6		0.068	[0.041-0.095] unit increase	Illumina [27887661] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		12q24.12	SH2B3	rs3184504-?	NR	1E-10		0.0066	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	12q24.12	SH2B3	rs3184504-?	NR	1E-10				Affymetrix, Illumina [2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	12q24.12	SH2B3	rs3184504-T	0.5	4E-13		1.18	[1.13-1.24]	Affymetrix, Illumina [7891602] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5175	9E-70		0.06308641	[0.056-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5176	3E-20		0.03291189	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5177	4E-13		0.0259686	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5174	7E-91		0.0724115	[0.065-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5174	2E-43		0.04902019	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5175	5E-216		0.114319	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5174	6E-180		0.1038733	[0.097-0.111] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5176	4E-12		0.02475963	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5177	1E-26		0.03834367	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5176	7E-134		0.08836465	[0.081-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5174	1E-74		0.06470062	[0.058-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5174	8E-72		0.06311912	[0.056-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-C	0.5177	3E-21		0.03386557	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		4E-6		0.259	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		3E-23		0.386	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		9E-15	(EA)	0.299	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		6E-18		0.316	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		4E-6	(Latino)	0.609	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T		2E-64		0.401	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.475	1E-15		0.498	[0.38-0.62] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1438	chr12	111884607	111884608	rs3184504	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.475	1E-21		0.362	[0.29-0.44] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1438	chr12	111884607	111884608	rs3184504	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q24.12	SH2B3	rs3184504-T	0.4594	3E-20		0.032	unit increase	Illumina [242296]	N
1438	chr12	111884607	111884608	rs3184504	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	12q24.12	NR	rs3184504-?		8E-7	(VCAM1)	0.101	[NR] unit increase	Illumina [NR]	N
1438	chr12	111884607	111884608	rs3184504	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-C	NR	1E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-C	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	3E-10		1.052	[1.036-1.069]	Illumina [13757430] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-?	NR	4E-10	(subset analysis)			Illumina [130052]	N
1438	chr12	111884607	111884608	rs3184504	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	12q24.12	SH2B3	rs3184504-C	0.52	8E-9	(same direction)	1.1	[1.06-1.13]	Illumina [up to 6000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.4615	2E-10	(EA)	0.5387	[0.37-0.71] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	0.421808	1E-9		1.07	[1.04- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q24.12	NR	rs3184504-?	NR	1E-9	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	12q24.12	SH2B3, CUX2, BRAP, ACAD10	rs3184504-C	0.53	2E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	12q24.12	CUX2, BRAP, ACAD10, SH2B3	rs3184504-C	0.53	2E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q24.12	SH2B3	rs3184504-T	0.49	6E-18	(kynurenine)	0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	12q24.12	SH2B3	rs3184504-?	0.43	8E-8		1.4	[1.20-1.60]	Illumina [254006]	N
1438	chr12	111884607	111884608	rs3184504	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	12q24.12	SH2B3	rs3184504-T	NR	9E-7		1.07	[1.04-1.11]	Illumina [575000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs3184504-C	0.5	5E-11		5.33	[NR] unit decrease	Illumina [476395]	N
1438	chr12	111884607	111884608	rs3184504	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	12q24.12	SH2B3, ATXN2	rs3184504-A	0.488	6E-11		1.18	[1.12-1.24]	Illumina [140322] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	23417110	Tin A	2013-02-16	Hum Genet	Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.	Beta-2 microglubulin plasma levels	6,728 European ancestry individuals		12q24.12	SH2B3, ATXN2	rs3184504-C	0.49	3E-8		0.02	[0.012-0.028] unit decrease	Affymetrix [2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	12q24.12	SH2B3, ATXN2	rs3184504-T	0.48	4E-19	(EA, Hgb)	0.051	[0.039-0.063] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	12q24.12	SH2B3, ATXN2, LOC100101246, BRAP, NAA25, C12orf51, PTPN11	rs3184504-T	0.502	3E-12		1.2	[1.14-1.27]	Illumina [870065]	N
1438	chr12	111884607	111884608	rs3184504	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	12q24.12	SH2B3	rs3184504-T	NR	1E-26		3.99	[3.26-4.72] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	12q24.12	SH2B3, ATXN2	rs3184504-C	0.488	5E-21		1.19		Illumina [139553]	N
1438	chr12	111884607	111884608	rs3184504	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.47	4E-25		0.448	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	12q24.12	SH2B3	rs3184504-T	NR	2E-38		1.3	[NR]	Affymetrix, Illumina [NR]	N
1438	chr12	111884607	111884608	rs3184504	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	12q24.12	SH2B3	rs3184504-T	0.44	6E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	12q24.12	SH2B3	rs3184504-T	0.51	6E-6		1.08	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	12q24.12	SH2B3	rs3184504-?	NR	3E-27				Affymetrix, Illumina [841622] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.48	5E-9		0.58	[0.38-0.78] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.48	3E-14		0.48	[0.36-0.60] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1438	chr12	111884607	111884608	rs3184504	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	12q24.12	SH2B3	rs3184504-T	0.38	7E-19	(EA)	7.6	[5.9-9.3] % standard unit increase	Illumina [312179]	N
1438	chr12	111885294	111885295	rs148636776	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	12q24.12		rs148636776-?	NR	2E-9		0.283834	[0.19-0.37] unit increase	NR [9800000] (imputed)	N
1438	chr12	111885294	111885295	rs148636776	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	12q24.12		rs148636776-?	NR	2E-62		0.721403	[0.63-0.81] unit increase	NR [9800000] (imputed)	N
1438	chr12	111885294	111885295	rs148636776	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	12q24.12		rs148636776-?	NR	3E-9		0.288677	[0.19-0.38] unit increase	NR [9800000] (imputed)	N
1438	chr12	111885294	111885295	rs148636776	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	12q24.12		rs148636776-?	NR	1E-10		0.29564	[0.2-0.39] unit increase	NR [9800000] (imputed)	N
1438	chr12	111885294	111885295	rs148636776	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.12	SH2B3	rs148636776-A	9.0E-4	1E-16		0.5928713	[0.45-0.73] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111885294	111885295	rs148636776	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	SH2B3	rs148636776-A	9.0E-4	8E-15		0.554956	[0.42-0.69] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.12	NR	rs72650673-A	NR	2E-17		0.2412	[0.19-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs72650673-A	NR	9E-27		0.2922	[0.24-0.35] unit increase	Affymetrix [9000000] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.12	NR	rs72650673-A	NR	8E-10		0.1747	[0.12-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00200599999999995	1E-17		0.2144049	[0.17-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00200500000000003	1E-25		0.26107857	[0.21-0.31] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00199400000000005	4E-13		0.1802122	[0.13-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00200199999999995	8E-13		0.17837518	[0.13-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00200100000000003	5E-18		0.21534182	[0.17-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00198900000000002	3E-21		0.23450926	[0.19-0.28] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111885309	111885310	rs72650673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.12	SH2B3	rs72650673-A	0.00198699999999996	4E-23		0.24525267	[0.2-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111886073	111886074	rs72650662	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	12q24.12		rs72650662-?	NR	3E-10		0.3902	[0.26-0.52] unit increase	NR [9800000] (imputed)	N
1438	chr12	111886966	111886967	rs11065904	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q24.12	SH2B3	rs11065904-A	0.5472	6E-9		0.0072	[0.0048-0.0096] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1438	chr12	111887658	111887659	rs739496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q24.12		rs739496-G	0.829806	8E-159		0.118553	[0.11-0.13] unit increase	Illumina [13478928] (imputed)	N
1438	chr12	111887658	111887659	rs739496	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	12q24.12		rs739496-A	NR	6E-10		0.159464	[0.11-0.21] unit increase	NR [2787054] (imputed)	N
1438	chr12	111887658	111887659	rs739496	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.12	NR	rs739496-?	NR	2E-29				Affymetrix [NR]	N
1438	chr12	111887658	111887659	rs739496	25705162	Oh JH	2014-12-31	Genomics Inform	Genome-wide association study identifies candidate Loci associated with platelet count in koreans.	Platelet count	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q24.12	SH2B3	rs739496-A	0.11	7E-12		8.25	[5.15-11.35] unit decrease	Affymetrix [2152228] (imputed)	N
1438	chr12	111887658	111887659	rs739496	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	12q24.12	SH2B3	rs739496-A	0.16	5E-19		0.141	[0.11-0.17] unit decrease	Illumina [561583]	N
1438	chr12	111887973	111887974	rs11065905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	12q24.12		rs11065905-A	0.567806	3E-9		0.0228424	[0.015-0.03] unit decrease	Illumina [13474682] (imputed)	N
1438	chr12	111890233	111890234	rs11348701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	ATXN2	rs11348701-A	0.3039	3E-34		0.05231826	[0.044-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111894071	111894072	rs2073950	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12q24.12	ATXN2	rs2073950-C	0.79	1E-29		11.3	z-score increase	Affymetrix [4311822] (imputed)	N
1438	chr12	111900778	111900779	rs78503944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	12q24.12	NR	rs78503944-T	0.621375	8E-12		0.087599	[0.063-0.113] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-9		0.0247314	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-9		0.0245012	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	7E-11		0.0267467	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	5E-10		0.0256052	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	3E-10		0.0258717	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496746	2E-11		0.0270116	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	5E-12		0.0285483	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	7E-11		0.0268133	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-10		0.0262147	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496746	4E-10		0.025374	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-10		0.0263192	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-8		0.0221025	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	7E-11		0.0269464	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	4E-10		0.0258922	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	1E-12		0.0289262	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	6E-12		0.0282182	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	5E-9		0.02415	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	3E-11		0.0273451	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	8E-11		0.0266505	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	1E-9		0.0252108	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	1E-8		0.0237317	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	5E-9		0.024208	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	4E-8		0.0227926	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	2E-11		0.0274687	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	12q24.12		rs4766578-T	0.496766	8E-9		0.0238175	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	12q24.12	ATXN2	rs4766578-T	NR	2E-13		1.19	[1.14-1.25]	Illumina [7461261] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-T		1E-8		1.02	[NR]	Affymetrix [up to 79000000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	12q24.12		rs4766578-A	0.52	9E-20		0.0747	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	12q24.12	NR	rs4766578-T	0.4958	4E-8		1.028	[1.02-1.04]	NR [8968716] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	12q24.12	ATXN2	rs4766578-T	0.47	5E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [8246881] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	12q24.12	NR	rs4766578-A	0.48	8E-15		0.025	[0.019-0.031] z score increase	Affymetrix [up to 10400000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-A	0.504	3E-8		0.0127	[0.0082-0.0172] unit decrease	Illumina [~ 250000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.12	ATXN2	rs4766578-A	0.5425	1E-14		0.0219	[0.016-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	12q24.12	ATXN2	rs4766578-A	0.495	8E-14				Affymetrix [28000000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-?	NR	1E-8		0.010036	[0.0066-0.0135] unit decrease	Affymetrix [805426] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q24.12	ATXN2	rs4766578-A	0.536	6E-20		0.059	[0.045-0.073] unit decrease	Affymetrix [7947838] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-A	0.5028	2E-69		0.06301181	[0.056-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-A	0.5028	4E-19		0.03163296	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-A	0.5028	2E-60		0.0586027	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q24.12	ATXN2	rs4766578-A	0.5029	3E-75		0.06562279	[0.059-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr12	111904370	111904371	rs4766578	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	1,541 European ancestry cases, 2,634 European ancestry controls	NA	12q24.12	ATXN2	rs4766578-T	0.48	8E-6		1.23	[1.12-1.35]	Illumina [102585]	N
1438	chr12	111904370	111904371	rs4766578	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	12q24.12	SH2B3	rs4766578-T	0.52	4E-18		1.32	[NR]	Illumina [495821]	N
1438	chr12	111905244	111905245	rs73201772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.12	ATXN2	rs73201772-T	0.117825	2E-9		0.021002855	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111905244	111905245	rs73201772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.12	ATXN2	rs73201772-T	0.117894	2E-20		0.0327053	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111905244	111905245	rs73201772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.12	NR	rs73201772-T	0.116411	5E-28		0.031217	[0.026-0.037] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	6E-10		0.0250796	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	4E-11		0.0266116	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	6E-12		0.0273262	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497402	6E-12		0.0277979	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497417	4E-9		0.0233501	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	1E-10		0.0250891	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	7E-12		0.0275334	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q24.12		rs35350651-A	0.497421	4E-11		0.0265081	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	12q24.12		rs35350651-AC	NR	5E-19		0.191253	[0.15-0.23] unit decrease	NR [5054572] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	12q24.12	ATXN2	rs35350651-A	0.476407	7E-14		1.09	[1.06-1.11]	NR [10903881] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs35350651-AC	0.5294	1E-8		0.1635	[0.11-0.22] unit decrease	Illumina [17945888] (imputed)	N
1438	chr12	111907431	111907431	rs35350651	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	12q24.12	ATXN2, SH2B3	rs35350651-C	0.4945	6E-14		1.04	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	12q24.12		rs10774625-G	0.49	4E-9		1.15		NR [NR] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs10774625-A	0.497176	3E-9		0.0219216	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.12		rs10774625-A	0.497176	1E-12		0.0260485	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.12		rs10774625-A	0.497176	2E-9		0.0219724	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs10774625-A	0.497176	9E-10		0.0240905	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.12		rs10774625-A	0.497176	6E-9		0.021622	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.12		rs10774625-A	0.487	1E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	12q24.12		rs10774625-?	NR	5E-6		0.969157	[0.96-0.98]	NR [688737]	N
1438	chr12	111910218	111910219	rs10774625	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.12	ATXN2	rs10774625-G	0.5229	4E-22				Affymetrix, Illumina [2331072] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.12	ATXN2	rs10774625-G	0.5229	2E-13				Affymetrix, Illumina [2331072] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.12	ATXN2	rs10774625-G	0.5229	1E-13				Affymetrix, Illumina [2331072] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q24.12	ATXN2	rs10774625-A	0.465241	3E-23		1.08	[1.07-1.10]	NR [8126035] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.12	ATXN2	rs10774625-G	0.504967	9E-18		0.022590932	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	12q24.12	ATXN2	rs10774625-?	NR	2E-13		0.0449492	NR unit decrease	Affymetrix [464137]	N
1438	chr12	111910218	111910219	rs10774625	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.12	ATXN2	rs10774625-A	0.4666	1E-17		0.0323	[0.025-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q24.12	ATXN2	rs10774625-A	0.4826	6E-17		0.032335	[0.025-0.04] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.12	NR	rs10774625-A	0.5361	4E-8	(men)	0.0364	[0.023-0.049] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.12	NR	rs10774625-A	0.5302	1E-6	(women)	0.0269	[0.016-0.038] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	12q24.12	NR	rs10774625-A		1E-8				Illumina [458865]	N
1438	chr12	111910218	111910219	rs10774625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12q24.12	ATXN2	rs10774625-A	0.4787	1E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q24.12	ATXN2, SH2B3, BRAP	rs10774625-G	0.504	2E-8		1.087	[1.056-1.119]	Affymetrix [10894596] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	12q24.12	ATXN2, SH2B3, BRAP	rs10774625-G	0.504	1E-7		0.713	[0.45-0.98] unit decrease	Affymetrix [10894596] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	12q24.12	ATXN2	rs10774625-G	0.5056	1E-8		0.0088	[0.0057-0.0119] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	12q24.12	SH2B3	rs10774625-A	0.491	9E-14		1.07	[1.05-1.08]	Affymetrix [9149595] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle diastolic internal dimension	30,201 European ancestry individuals	14,002 European ancestry individuals	12q24.12	ATXN2	rs10774625-G	0.5	1E-8		0.016	[-0.01536-0.04736] cm increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	12q24.12	SH2B3	rs10774625-?	0.499	9E-8	(EA)	1.17	[NR]	NR [6344733] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	12q24.12	ATXN2	rs10774625-?	NR	1E-26		1.1428571	[1.11-1.17]	Illumina [13676411] (imputed)	N
1438	chr12	111910218	111910219	rs10774625	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	12q24.12	SH2B3, ATXN2	rs10774625-A		4E-9		1.13	[1.08-1.18]	Illumina [644674]	N
1438	chr12	111910218	111910219	rs10774625	21060863	Ikram MK	2010-10-28	PLoS Genet	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	12q24.12	SH2B3, ATXN2, PTPN11	rs10774625-A	0.48	2E-13	(Retinal venular caliber)	1.5	[1.11-1.89] um increase	Affymetrix, Illumina [2194468] (imputed)	N
1438	chr12	111910589	111910590	rs111818253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	12q24.12	NR	rs111818253-C	0.171973	5E-136		0.132576	[0.12-0.14] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1438	chr12	111926900	111926901	rs1029388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.12	ATXN2	rs1029388-C	0.211794	3E-25		0.028059587	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111926900	111926901	rs1029388	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	ATXN2	rs1029388-?	NR	3E-11		0.012157	[0.0086-0.0157] unit decrease	Affymetrix [805426] (imputed)	N
1438	chr12	111926960	111926961	rs570074821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.12	ATXN2	rs570074821-G	0.00193900000000002	3E-43		0.3471126	[0.3-0.4] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111926960	111926961	rs570074821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.12	ATXN2	rs570074821-G	0.00194099999999997	8E-37		0.32010013	[0.27-0.37] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr12	111927850	111927850	rs541707256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.12	ATXN2	rs541707256-TA	0.203274	4E-16		0.022500355	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	12q24.12		rs7137828-C	0.484118	1E-24		0.042408	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	12q24.12		rs7137828-C	0.484109	2E-10		0.0260567	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.12		rs7137828-C	0.485	5E-201				Affymetrix [10369434] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.12	SH2B3	rs7137828-?	NR	3E-83		0.133	NR L decrease	Affymetrix [9390170] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	12q24.12	ATXN2	rs7137828-T	NR	2E-9		0.043	unit increase	Illumina [15409056] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	12q24.12	SH2B3	rs7137828-C	0.46	5E-8		1.3	[1.18-1.42]	Illumina [7068382] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	12q24.12		rs7137828-T	0.53	4E-11		0.0685	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q24.12	ATXN2	rs7137828-T	0.51759	2E-307		0.08334227	[0.079-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.534191	6E-127				Affymetrix, Illumina [24332387] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.516713	3E-129		0.04467	[0.041-0.048] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.516698	3E-496		0.090212	[0.087-0.094] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.533736	2E-272				Affymetrix, Illumina [24653286] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.516238	4E-273		0.064984	[0.061-0.069] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.533958	1E-241				Affymetrix, Illumina [24558453] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q24.12	NR	rs7137828-T	0.51642	3E-243		0.061464	[0.058-0.065] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	12q24.12	ATXN2	rs7137828-T	0.5167	5E-12				NR [7320282]	N
1438	chr12	111932799	111932800	rs7137828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.12		rs7137828-?	NR	9E-56				NR [~ 8900000] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	ATXN2	rs7137828-T	0.53	2E-19	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	ATXN2	rs7137828-T	0.51	4E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs7137828-C	NR	2E-7				Affymetrix [11535925] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs7137828-C	NR	3E-12				Affymetrix [11535925] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs7137828-C	0.483	3E-14		0.017	[0.013-0.021] unit increase	Affymetrix [11535925] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs7137828-C	NR	3E-8				Affymetrix [11535925] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	12q24.12	NR	rs7137828-C	NR	3E-6				Affymetrix [11535925] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q24.12	ATXN2	rs7137828-T	0.5535	4E-27		0.0643	[0.053-0.076] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q24.12	ATXN2	rs7137828-T	0.54	2E-10		1.033	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-C		3E-6		0.266	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.12	NR	rs7137828-C		3E-23		0.389	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-C		7E-15	(EA)	0.304	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-C		4E-6	(Latino)	0.613	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.12	NR	rs7137828-C		4E-18		0.32	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.12	NR	rs7137828-C		1E-63		0.403	unit increase	Affymetrix [at least 2696785] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,853 European ancestry cases, 33,480 European ancestry controls	2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases,  2,543 Singaporean Chinese ancestry controls	12q24.12	ATXN2	rs7137828-T	0.5	9E-10	(European)	1.17	NR	Affymetrix, Illumina [6425680] (imputed)	N
1438	chr12	111932799	111932800	rs7137828	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	12q24.12	SH2B3, ATXN2	rs7137828-C	0.49	2E-9	(additive model)	1.2	[1.13-1.28]	Illumina [123003]	N
1438	chr12	111933544	111933545	rs77465633	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	12q24.12		rs77465633-A	NR	4E-9		1.32	[1.2-1.45]	NR [13810676] (imputed)	N
1438	chr12	111933544	111933545	rs77465633	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.12	ATXN2	rs77465633-A	0.068	7E-18		1.34	[1.27-1.41]	Illumina [11270530] (imputed)	N
1439	chr12	111936992	111936993	rs551014092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.12	ATXN2	rs551014092-A	0.00197199999999997	5E-204		0.7745586	[0.72-0.82] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	111936992	111936993	rs551014092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.12	ATXN2	rs551014092-A	0.00197000000000003	5E-193		0.7563187	[0.71-0.81] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	111939546	111939547	rs2238153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	12q24.12		rs2238153-A	0.534943	1E-14		0.0298459	[0.022-0.037] unit decrease	Illumina [13477433] (imputed)	N
1439	chr12	111939546	111939547	rs2238153	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	12q24.12	ATXN2	rs2238153-?	NR	1E-10		0.02979	[0.021-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1439	chr12	111946434	111946435	rs614591	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs614591-A	0.77215	4E-14				Affymetrix, Illumina [17210439] (imputed)	N
1439	chr12	111946434	111946435	rs614591	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.12	NR	rs614591-A	0.789112	5E-16		0.018777	[0.014-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1439	chr12	111952028	111952029	rs138742290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q24.12	ATXN2	rs138742290-G	0.007606	2E-10		0.081918605	[0.057-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	111952028	111952029	rs138742290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q24.12	ATXN2	rs138742290-G	0.00760400000000006	3E-10		0.081108764	[0.056-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	111952166	111952167	rs630512	33545615	Hsu LA	2021-01-19	Atherosclerosis	Circulating chemerin levels are determined through circulating platelet counts in nondiabetic Taiwanese people: A bidirectional Mendelian randomization study.	Platelet count	17,037 Han Chinese ancestry individuals	NA	12q24.12	SH2B3, ATXN2	rs630512-?	NR	2E-8		7.482	[5.23-9.73] unit decrease (adjusted)	Affymetrix [603527]	N
1439	chr12	111952214	111952215	rs61944384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs61944384-A	NR	5E-14		0.0433	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	111953703	111953704	rs16941541	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.12		rs16941541-G	0.96	3E-13				Affymetrix [10369434] (imputed)	N
1439	chr12	111963569	111963570	rs11065939	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Skin flushing frequency	1,108 Japanese ancestry individuals	NA	12q24.12		rs11065939-C	0.408	2E-10		0.22	[0.15-0.29] unit decrease	Illumina [6258233] (imputed)	N
1439	chr12	111968477	111968478	rs139891589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	12q24.12		rs139891589-C	0.953	2E-13				Affymetrix [10369434] (imputed)	N
1439	chr12	111973139	111973140	rs598711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q24.12		rs598711-G	NR	4E-45		0.0344	[0.03-0.039] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1439	chr12	111973357	111973358	rs597808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.12		rs597808-G	NR	2E-38		0.0302	[0.026-0.035] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1439	chr12	111973357	111973358	rs597808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q24.12		rs597808-G	NR	4E-54		0.0369	[0.032-0.042] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1439	chr12	111973357	111973358	rs597808	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q24.12		rs597808-A	0.485	4E-25				Affymetrix [10369434] (imputed)	N
1439	chr12	111973357	111973358	rs597808	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12q24.12		rs597808-G	NR	3E-14		0.06	[0.04-0.08] unit decrease	Illumina [110351653]	N
1439	chr12	111973357	111973358	rs597808	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	12q24.12		rs597808-G	NR	2E-12		0.16	[0.12-0.2] unit decrease	Illumina [110396782]	N
1439	chr12	111973357	111973358	rs597808	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs597808-G	0.53628	9E-9		0.1543	[0.1-0.21] unit decrease	Illumina [18427377] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	12q24.12	ATXN2	rs597808-G	0.523	3E-15		0.033	[0.025-0.041] unit decrease	NR [NR] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	12q24.12	ATXN2	rs597808-G	0.523	2E-15		0.033	[0.025-0.041] unit decrease	NR [7647814] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q24.12	ATXN2	rs597808-A	0.484083	2E-38		0.0271233	[0.023-0.031] unit decrease	Affymetrix [NR] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q24.12	ATXN2	rs597808-A	0.484096	2E-25		0.021719	[0.018-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	12q24.12		rs597808-?	0.5055	2E-14		0.0621	[0.046-0.078] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	12q24.12		rs597808-?	0.6043	2E-15		0.0531	[0.04-0.066] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	12q24.12		rs597808-?	0.5055	3E-12		0.1679	[0.12-0.22] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	12q24.12		rs597808-?	0.6043	9E-13		0.1402	[0.1-0.18] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.12	ATXN2	rs597808-?	NR	4E-23		0.0255	[0.021-0.03] unit decrease	Affymetrix [5701386] (imputed)	N
1439	chr12	111973357	111973358	rs597808	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	12q24.12	ATXN2, BRAP, SH2B3	rs597808-A	NR	6E-9		1.0330338	[1.0218-1.0442]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	12q24.12	ATXN2	rs597808-G	0.5183	2E-8		1.0649627	[1.04-1.09]	Affymetrix [15688218] (imputed)	N
1439	chr12	111973357	111973358	rs597808	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12q24.12	NR	rs597808-G	NR	8E-15		1.09	[1.07-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.12	ATXN2	rs597808-A	0.4837	2E-11		0.014555817	[0.01-0.019] unit increase	Affymetrix [11514654] (imputed)	N
1439	chr12	111973357	111973358	rs597808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.12		rs597808-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.12		rs597808-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1439	chr12	111973357	111973358	rs597808	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q24.12	SH2B3	rs597808-G	0.5166	3E-16		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
1439	chr12	111973357	111973358	rs597808	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	12q24.12	ATXN2/SH2B3	rs597808-A	0.51	4E-12		0.18	[0.13-0.23] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1439	chr12	111973357	111973358	rs597808	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.12	ATXN2	rs597808-A	0.49	8E-32	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	111973357	111973358	rs597808	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	ATXN2	rs597808-A	0.47	8E-60	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	111973357	111973358	rs597808	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	12q24.12	SH2B3	rs597808-A		6E-10		1.18	[NR]	Illumina [> 644674] (imputed)	N
1439	chr12	111974822	111974823	rs619010	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q24.12	ATXN2	rs619010-?	NR	1E-104		0.1258	[0.11-0.14] unit increase novel	Illumina [6108953] (imputed)	N
1439	chr12	111976775	111976776	rs648997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	12q24.12		rs648997-C	0.741911	3E-8		0.026457	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1439	chr12	111976775	111976776	rs648997	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	12q24.12		rs648997-?	NR	2E-12				NR [7857346] (imputed)	N
1439	chr12	111976775	111976776	rs648997	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	ATXN2	rs648997-?	NR	2E-12		0.012891	[0.0093-0.0165] unit decrease	Affymetrix [805426] (imputed)	N
1439	chr12	111982812	111982813	rs629404	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12q24.12	NA	rs629404-T		4E-13		0.0154465	[0.011-0.02] unit decrease	Illumina [13288253] (imputed)	N
1439	chr12	111989657	111989658	rs666727	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q24.12	ATXN2	rs666727-C	0.796282	9E-46		0.00407213	[0.0035-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
1439	chr12	111991248	111991249	rs61944388	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.12		rs61944388-A	0.959	1E-18				Affymetrix [10369434] (imputed)	N
1439	chr12	111993711	111993712	rs7969300	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.12	ATXN2	rs7969300-T		9E-9		1.3157895		Illumina [31245]	N
1439	chr12	112003694	112003695	rs615134	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q24.12	ATXN2	rs615134-A	0.1117	1E-9		0.03450176	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	3E-10		0.0245744	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	5E-8		0.0217629	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-10		0.0243764	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	5E-11		0.0258963	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-13		0.0293133	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	1E-12		0.028828	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-14		0.0305352	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	12q24.12		rs653178-C	0.483953	3E-10		0.024447	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	5E-14		0.030207	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12q24.12		rs653178-C	0.483953	8E-15		0.0300303	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-9		0.0247731	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-12		0.0273172	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	8E-10		0.0243771	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	9E-10		0.0244864	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-12		0.0276945	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	1E-11		0.0266054	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-11		0.0264821	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	3E-9		0.0228574	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-8		0.0204682	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-14		0.0303093	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	8E-9		0.0214987	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-8		0.0203359	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	6E-10		0.0252979	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-10		0.0247041	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-8		0.0228169	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	1E-9		0.0243993	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	5E-10		0.0230419	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	5E-10		0.0255285	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	1E-8		0.0208072	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	3E-14		0.0304397	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	9E-10		0.0238212	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-11		0.0256182	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	7E-9		0.0232446	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-9		0.0225654	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	4E-9		0.0243235	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	1E-8		0.020843	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	12q24.12		rs653178-C	0.483964	2E-14		0.0305813	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.12		rs653178-C	0.47	2E-35		12.41	z score increase	Affymetrix [9061022] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.12		rs653178-C	0.47	6E-34		12.15	z score increase	Affymetrix [9061022] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.12		rs653178-C	0.47	2E-22		9.77	z score increase	Affymetrix [9061022] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.12	NR	rs653178-C	0.4805	1E-17				NR [9056863] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.12	NR	rs653178-C	0.4805	1E-17				NR [9056863] (imputed)	N
1439	chr12	112007755	112007756	rs653178	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	12q24.12		rs653178-C	0.484	8E-64				Affymetrix [10369434] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	12q24.12		rs653178-?	NR	1E-9				NR [9705931] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	1E-45		0.0342	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	1E-33		0.0291	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	1E-56		0.0383	[0.034-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	8E-18		0.0217	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	1E-27		0.0275	[0.023-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	9E-23		0.0237	[0.019-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	4E-20		0.0232	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	3E-59		0.0409	[0.036-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	1E-22		0.0236	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	8E-31		0.0291	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	4E-31		0.0286	[0.024-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	2E-40		0.0348	[0.03-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	3E-174		0.0678	[0.063-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	2E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	3E-17		0.0204	[0.016-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	4E-12		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	5E-13		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	NR	3E-25		0.0251	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	12q24.12	NR	rs653178-C	NR	5E-8		1.06	NR	NR [8016731] (imputed)	N
1439	chr12	112007755	112007756	rs653178	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q24.12	NR	rs653178-T	0.52	2E-54		0.0282	[0.025-0.032] unit decrease	NR [NR]	N
1439	chr12	112007755	112007756	rs653178	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA- CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs653178-T	0.52871	1E-8		0.1619	[0.11-0.22] unit decrease	Illumina [18332267] (imputed)	N
1439	chr12	112007755	112007756	rs653178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q24.12	ATXN2	rs653178-T	0.517855	8E-111		0.04952839	[0.045-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	112007755	112007756	rs653178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q24.12	ATXN2	rs653178-T	0.517864	2E-75		0.04059862	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	112007755	112007756	rs653178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs653178-T	0.59765	2E-492				Affymetrix, Illumina [23472807] (imputed)	N
1439	chr12	112007755	112007756	rs653178	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q24.12	ATXN2	rs653178-T	0.53	1E-10				NR [> 9500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q24.12	NR	rs653178-T	0.5173	1E-15		1.0485477	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
1439	chr12	112007755	112007756	rs653178	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	12q24.12	NR	rs653178-T	0.5173	3E-14		1.0423181	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1439	chr12	112007755	112007756	rs653178	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	12q24.12	NR	rs653178-?	NR	1E-7		0.628215	[0.4-0.86] unit decrease	Illumina [32101933] (imputed)	N
1439	chr12	112007755	112007756	rs653178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q24.12		rs653178-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.12	ATXN2	rs653178-T	0.5505	2E-22		0.0273	[0.022-0.033] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.12	ATXN2	rs653178-T	0.5505	4E-20		0.0258	[0.02-0.031] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.12	NR	rs653178-?	NR	4E-10		0.0507	[0.035-0.067] unit decrease	Illumina [at least 560000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	12q24.12	ATXN2	rs653178-?	NR	7E-9		1.14	[1.08-1.20]	Illumina [at least 5000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	12q24.12	SH2B3, BRAP, ACAD10, ALDH2, TMEM116, NAA25, ATXN2, MAPKAPK5, ERP29, RP11-162P23.2	rs653178-?		2E-9				Illumina [9725440] (imputed)	N
1439	chr12	112007755	112007756	rs653178	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	12q24.12	SH2B3, BRAP, ACAD10, ALDH2, TMEM116, NAA25, ATXN2, MAPKAPK5, ERP29, RP11-162P23.2	rs653178-?		7E-7				Illumina [9560910] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.5168	7E-167		0.09799102	[0.091-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.517	5E-108		0.07881358	[0.072-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.5169	1E-43		0.04937698	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.5168	3E-120		0.08283769	[0.076-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.517	4E-126		0.08525002	[0.078-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12q24.12	ATXN2	rs653178-T	0.5168	1E-180		0.1019119	[0.095-0.109] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.12	ATXN2, SH2B3	rs653178-G	0.425604052030736	1E-23		0.47911206	[0.39-0.57] unit increase	Illumina [247039]	N
1439	chr12	112007755	112007756	rs653178	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q24.12	ATXN2	rs653178-T	0.6037	5E-7		0.415	[0.25-0.58] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q24.12	ATXN2	rs653178-T	0.5018	1E-8	(EA)	0.5511	[0.36-0.74] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	12q24.12	SH2B3	rs653178-C	0.44	3E-11		1.08	[1.06-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q24.12	SH2B3, ALDH2, ATXN2	rs653178-G	0.4942	1E-8	(EA)	1.0580138	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q24.12	SH2B3, ALDH2, ATXN2	rs653178-G	0.4942	7E-8	(EA)	1.0667465	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	12q24.12	ATXN2, SH2B3	rs653178-G	0.5	2E-10	(EA)	1.19	[1.14-1.27]	Illumina [128705]	N
1439	chr12	112007755	112007756	rs653178	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	12q24.12	SH2B3	rs653178-C	0.48	2E-44		1.3		Illumina [135870]	N
1439	chr12	112007755	112007756	rs653178	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	12q24.12	ATXN2, SH2B3, LNK	rs653178-C	NR	2E-7		1.19		Illumina [1233578] (imputed)	N
1439	chr12	112007755	112007756	rs653178	25009551	Kullo IJ	2014-06-25	Front Genet	The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study.	Peripheral artery disease	1,641 European ancestry cases, 1,604 European ancestry controls	740 European ancestry cases, 1,501 European ancestry controls	12q24.12	SH2B3, ATXN2	rs653178-C	0.469	6E-7		1.22	[1.13-1.32]	Illumina [537872]	N
1439	chr12	112007755	112007756	rs653178	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	12q24.12	SH2B3, ATXN2	rs653178-C	0.40	1E-9		1.14	[1.08-1.19]	Affymetrix, Illumina [up to 3437411] (imputed)	N
1439	chr12	112007755	112007756	rs653178	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	12q24.12	SH2B3, ATXN2	rs653178-C	0.40	1E-7		0.0147	[0.0059-0.0235] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
1439	chr12	112007755	112007756	rs653178	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.12	ATXN2, PTPN11	rs653178-T	0.51	7E-12		0.035	[0.025-0.045] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1439	chr12	112007755	112007756	rs653178	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q24.12	ATXN2	rs653178-T	0.59	7E-20	(Mean Arterial Pressure)	0.429	[0.34-0.52] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1439	chr12	112007755	112007756	rs653178	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	12q24.12	SH2B3	rs653178-C	NR	3E-19				Illumina [472854]	N
1439	chr12	112007755	112007756	rs653178	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	12q24.12	ATXN2	rs653178-T	0.5	4E-11	(eGFRcys)	0.01	[0.009-0.017] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1439	chr12	112007755	112007756	rs653178	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	12q24.12	SH2B3	rs653178-G	0.50	7E-21		1.2	[1.15-1.24]	Illumina [292387]	N
1439	chr12	112007755	112007756	rs653178	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	12q24.12	SH2B3, ATXN2	rs653178-T	0.53	3E-18		0.46	[0.36-0.56] mm Hg decrease	Affymetrix, Illumina [2497993] (imputed)	N
1439	chr12	112007755	112007756	rs653178	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	12q24.12	SH2B3, ATXN2	rs653178-G	0.48	8E-8		1.21	[1.13-1.30]	Illumina [310605]	N
1439	chr12	112013940	112013941	rs61941261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.12	ATXN2	rs61941261-C	0.736943	1E-23		0.047420852	[0.038-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	112013943	112013944	rs61941262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12q24.12		rs61941262-A	NR	7E-21		0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1439	chr12	112013943	112013944	rs61941262	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.12	ATXN2	rs61941262-A	0.7405	2E-9		0.02650809	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112016919	112016920	rs138281696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs138281696-T	0.985	2E-16				Affymetrix [10369434] (imputed)	N
1439	chr12	112020792	112020797	rs376877108	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	12q24.12	ATXN2	rs376877108-GTT	0.201051	9E-10		0.01783	[0.012-0.024] unit increase	Affymetrix [19400838] (imputed)	N
1439	chr12	112023066	112023067	rs11065961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.12		rs11065961-G	0.244418	1E-9		0.0281254	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1439	chr12	112023066	112023067	rs11065961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	12q24.12		rs11065961-G	0.244418	3E-10		0.0301833	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1439	chr12	112023066	112023067	rs11065961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.12	ATXN2	rs11065961-A	0.753987	7E-209		0.10059846	[0.094-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	112023066	112023067	rs11065961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12q24.12	ATXN2	rs11065961-A	0.7546	4E-12		0.02893251	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112024095	112024096	rs540244401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.12	ATXN2	rs540244401-A	0.00225900000000001	3E-23		0.24099734	[0.19-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	112032569	112032570	rs145618127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.12		rs145618127-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1439	chr12	112036796	112036797	rs4098854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.12	ATXN2	rs4098854-T	0.721012	8E-18		0.036805436	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr12	112036999	112037000	rs695871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.12	ATXN2	rs695871-C	0.781744	1E-15		0.028704269	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	112037525	112037526	rs10849962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.12	RP11-686G8.2	rs10849962-G	0.784372	4E-13		0.02274246	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1439	chr12	112058266	112058274	rs149673355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.12		rs149673355-A	NR	6E-9		0.0192	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.12	BRAP	rs11065979-T	NR	2E-8		0.0158743	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16+ monocyte	3,611 Sardinian (founder/genetic isolate) ancestry individuals	NA	12q24.12		rs11065979-T	0.46898	6E-9		0.1497	[0.099-0.2] unit increase	Illumina [18210047] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Small vessel stroke (CCSp classification)	2,419 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	12q24.12	SH2B3, BRAP, ALDH2	rs11065979-?	NR	9E-9		1.13	NR	Illumina [~ 10156805] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	12q24.12	NR	rs11065979-?	NR	5E-8		0.6575675	[0.42-0.89] unit increase	Illumina [32101933] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	12q24.12	ATXN2, BRAP	rs11065979-C	0.558	2E-7		1.054	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q24.12	ATXN2, BRAP	rs11065979-?	NR	5E-18		1.066	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q24.12	ATXN2, BRAP	rs11065979-C	NR	3E-7		1.036	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	12q24.12	ATXN2, BRAP	rs11065979-C	0.56	1E-12		0.2798	[0.2-0.36] years increase	NR [up to 9000000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	12q24.12	ATXN2	rs11065979-?	NR	3E-9		0.0776	[0.052-0.103] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.12	BRAP	rs11065979-T	0.45	2E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	BRAP	rs11065979-T	0.45	1E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	BRAP	rs11065979-T	0.43	2E-14	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	BRAP	rs11065979-T	0.45	1E-16	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	BRAP	rs11065979-T	0.45	2E-45	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	BRAP	rs11065979-T	0.45	4E-21	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.12	BRAP	rs11065979-T	0.438	2E-12	(Platelet glycoprotein Ib alpha chain, GP1BA.4990.87.1)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.12	NR	rs11065979-C	0.562141	2E-12		0.0158643	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	12q24.12	BRAP, MAPKAPK5	rs11065979-T	0.45	2E-8		1.08		Illumina, Perlegen [9113515] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	12q24.12	intergenic	rs11065979-T	0.4389	1E-12		0.02509587	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Diastolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	12q24.12	SH2B3, ATXN2	rs11065979-A	0.27	3E-8	(Hispanic)	0.73	[0.48-0.98] unit decrease	Illumina [up to 196725]	N
1439	chr12	112059556	112059557	rs11065979	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	12q24.12	Intergenic	rs11065979-T	NR	5E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1439	chr12	112059556	112059557	rs11065979	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	12q24.12	ATXN2, BRAP, SH2B3	rs11065979-A	0.44	3E-9		1.2	[1.13-1.27]	Illumina [237619] (imputed)	N
1439	chr12	112061722	112061723	rs77684561	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	12q24.12	BRAP, ALDH2, MAKKAPK5	rs77684561-?	NR	2E-13		1.5	NR unit increase	NR [14100000] (imputed)	N
1439	chr12	112061722	112061723	rs77684561	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	12q24.12	BRAP, ALDH2, MAKKAPK5	rs77684561-?	NR	5E-8				NR [14100000] (imputed)	N
1439	chr12	112065794	112065795	rs11065983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	12q24.12		rs11065983-A	0.598782	2E-9		0.0200486	[0.014-0.027] unit decrease	Illumina [13479178] (imputed)	N
1440	chr12	112069835	112069836	rs183015141	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q24.12	NR	rs183015141-G	0.973296	1E-10		0.0244276	[0.017-0.032] unit increase	Affymetrix [16585854] (imputed)	N
1440	chr12	112069835	112069836	rs183015141	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q24.12	NR	rs183015141-G	0.973296	1E-11		0.0287762	[0.02-0.038] unit increase	Affymetrix [16585866] (imputed)	N
1440	chr12	112072242	112072243	rs12319170	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	12q24.12		rs12319170-T	0.7165	9E-9		0.0713	[0.047-0.096] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	12q24.12		rs11065987-?	NR	2E-6		0.967487	[0.95-0.98]	NR [688737]	N
1440	chr12	112072423	112072424	rs11065987	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.12	ALDH2	rs11065987-G		6E-135		0.055	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q24.12	BRAP	rs11065987-A	0.598613	3E-8		1.0347302	[1.02226687008468-1.04734545727041]	NR [9572556] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.12	NR	rs11065987-A	NR	4E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	NR	1E-10		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	0.564	3E-10	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	NR	6E-10		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	0.564	9E-10	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	NR	1E-7		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.12	NR	rs11065987-A	0.564	4E-7	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	12q24.12	SH2B3	rs11065987-?	NR	1E-8				NR [2500000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q24.12	CUX2, FAM109A, SH2B3, ATXN2, ACAD10, ALDH2, MAPKAPK5-AS1, MAPKAPK5, ADAM1A, TMEM116, ERP29, NAA25, TRAFD1	rs11065987-A	0.581567739747605	2E-11		0.018835803	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	12q24.12	ATXN2, SH2B3, TRAFD1, ALDH2	rs11065987-G	0.37	3E-8		1.1904762	NR	Illumina [1143634] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.12	BRAP	rs11065987-A	0.585	1E-6		0.015	[0.0088-0.021] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1440	chr12	112072423	112072424	rs11065987	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.12	BRAP	rs11065987-A	0.581	1E-6	(EA)	0.015	[0.0091-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1440	chr12	112072423	112072424	rs11065987	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	12q24.12	SH2B3	rs11065987-?		3E-10				Affymetrix, Illumina [up to 2500000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	12q24.12	SH2B3	rs11065987-?		4E-14				Affymetrix, Illumina [up to 2500000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.12	BRAP	rs11065987-G	0.41	1E-11		0.027	[NR] unit decrease	NR [NR] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.12	BRAP	rs11065987-G	0.41	2E-16		0.031	[NR] unit decrease	NR [NR] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	12q24.12	PTPN11	rs11065987-G	0.418	8E-11		1.344	[1.208-1.496]	Illumina [516131]	N
1440	chr12	112072423	112072424	rs11065987	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	12q24.12	BRAP	rs11065987-G	0.42	2E-9		0.97	[0.62-1.32] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	12q24.12	BRAP	rs11065987-G	0.42	7E-12		0.96	[0.57-1.35] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	12q24.12	TRAFD1	rs11065987-A	NR	1E-11		0.06	[0.04-0.08] g/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1440	chr12	112072423	112072424	rs11065987	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	12q24.12	SH2B3, ATXN2	rs11065987-G	NR	1E-12		0.17	[0.12-0.22] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1440	chr12	112074676	112074677	rs550685946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q24.12		rs550685946-G	0.00220399999999998	4E-9		0.1451252	[0.097-0.194] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr12	112083161	112083162	rs11065991	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q24.12	NR	rs11065991-T	0.414918	7E-417		0.087935	[0.084-0.092] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1440	chr12	112088446	112088447	rs749237684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.12	BRAP	rs749237684-A	0.0018	2E-35		0.5915532	[0.5-0.69] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr12	112088446	112088447	rs749237684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	BRAP	rs749237684-A	0.0019	3E-31		0.5510884	[0.46-0.64] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr12	112090021	112090022	rs10744774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q24.12	NR	rs10744774-A	0.834167	5E-375		0.103445	[0.099-0.108] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1440	chr12	112090021	112090022	rs10744774	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	12q24.12	BRAP	rs10744774-A	0.83	7E-11		0.044	[0.03-0.058] unit increase	NR [NR]	N
1440	chr12	112090021	112090022	rs10744774	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	12q24.12		rs10744774-?	0.1656	1E-6		0.003118	unit increase	NR [6200000] (imputed)	N
1440	chr12	112090021	112090022	rs10744774	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	12q24.12		rs10744774-?	0.1656	2E-11		0.01009	unit increase	NR [6200000] (imputed)	N
1440	chr12	112090021	112090022	rs10744774	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	12q24.12		rs10744774-?	0.1656	6E-7		0.009325	unit increase	NR [6200000] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.00269600000000003	2E-11		0.14979146	[0.11-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.002695	1E-13		0.16602588	[0.12-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.00269799999999998	2E-19		0.2060183	[0.16-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.00269299999999995	3E-15		0.17751777	[0.13-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.00270000000000004	3E-11		0.14781973	[0.1-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr12	112092461	112092462	rs184354242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.12	BRAP	rs184354242-A	0.00270000000000004	4E-13		0.161111	[0.12-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr12	112096214	112096215	rs10744775	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q24.12	NR	rs10744775-C	0.28	5E-7		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
1440	chr12	112096214	112096215	rs10744775	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	12q24.12	BRAP	rs10744775-T	NR	3E-8				NR [2501749] (imputed)	N
1440	chr12	112105502	112105502	rs565349424	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.12	NR	rs565349424-?	NR	1E-27	(conditional)	0.0775	NR L increase	Affymetrix [9390170] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.12	BRAP	rs3782886-G	0.159	7E-20	(male)	0.01	[0.008-0.012] unit decrease	NR [8056211] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	12q24.12	NR	rs3782886-T	0.776053	4E-72		0.107572	[0.096-0.119] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	12q24.12	NR	rs3782886-T	0.776046	1E-108		0.133411	[0.12-0.15] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.12	NR	rs3782886-C	NR	3E-7		1.33	NR	Affymetrix [352228] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	12q24.12	BRAP	rs3782886-C	0.205	5E-17	(East Asian)	0.602	[0.46-0.74] unit decrease	Affymetrix [up to 12500000] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.12	BRAP	rs3782886-G		6E-17		1.49		Illumina [31245]	N
1440	chr12	112110488	112110489	rs3782886	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	12q24.12	BRAP	rs3782886-?	NR	2E-7				Illumina [1940243] (imputed)	N
1440	chr12	112110488	112110489	rs3782886	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	12q24.12	BRAP	rs3782886-C	0.329	4E-11		8.93	[6.29-11.57] umol/L decrease	Illumina [~ 244000]	N
1440	chr12	112110488	112110489	rs3782886	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	12q24.12	BRAP	rs3782886-A	NR	8E-6	(fixed)	1.084481		Illumina [87827]	N
1440	chr12	112110488	112110489	rs3782886	24916648	Hirokawa M	2014-06-11	Eur J Hum Genet	A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese.	Myocardial infarction	1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls	11,412 Japanese ancestry cases, 28,397 Japanese ancestry controls	12q24.12	ALDH2	rs3782886-A	0.26	1E-14		1.46	[1.33-1.60]	Illumina [455781]	N
1440	chr12	112110488	112110489	rs3782886	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	12q24.12	BRAP, ALDH2	rs3782886-G	0.27	5E-9	(ALT)	0.079	[0.052-0.106] unit decrease	Illumina [561583]	N
1440	chr12	112118575	112118576	rs847895	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	NR	rs847895-?	NR	5E-8		0.009541	[0.0061-0.013] unit decrease	Affymetrix [805426] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Skin flushing frequency	1,108 Japanese ancestry individuals	NA	12q24.12		rs11066001-C	0.257	4E-25		0.403	[0.33-0.48] unit increase	Illumina [6258233] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-to-hip ratio adjusted for BMI	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.12	BRAP	rs11066001-C	0.157	3E-14	(male)	0.004	[0.002-0.006] unit decrease	NR [8056211] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.12	BRAP	rs11066001-?		5E-9		0.69	[0.61-0.78]	Illumina [9899436] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.12		rs11066001-T	NR	2E-11	(East Asian)			Affymetrix [NR] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q24.12	BRAP	rs11066001-C	0.261	2E-7		0.039	[0.023-0.055] cups per day increase	Illumina [5256047] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	12q24.12	NR	rs11066001-T	0.778253	1E-38		0.076768	[0.065-0.088] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1440	chr12	112119170	112119171	rs11066001	31591379	Sun Y	2019-10-07	Transl Psychiatry	Genome-wide association study of alcohol dependence in male Han Chinese and cross-ethnic polygenic risk score comparison.	Alcohol dependence	533 Han Chinese ancestry cases, 2,848 Han Chinese ancestry controls	146 Han Chinese ancestry cases, 200 Han Chinese ancestry controls	12q24.12	BRAP	rs11066001-?	NR	7E-12		4.76	[4.47-5.05]	Illumina [6449738] (imputed)	N
1440	chr12	112132609	112132610	rs61941274	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	12q24.12	ACAD10	rs61941274-?	NR	1E-9	(EA)	1.51		Illumina [12023830] (imputed)	N
1440	chr12	112134084	112134085	rs76592670	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q24.12		rs76592670-G	0.929	5E-10				Affymetrix [10369434] (imputed)	N
1440	chr12	112134661	112134662	rs189424182	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.12		rs189424182-G	0.98	3E-13				Affymetrix [10369434] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	12q24.12	NR	rs11066008-A	0.711016	3E-22		0.051237	[0.041-0.062] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs11066008-A	0.940844	7E-61				Affymetrix, Illumina [24246363] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs11066008-A	0.938781	3E-29				Affymetrix, Illumina [21126107] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.12	NR	rs11066008-A	0.941133	1E-91				Affymetrix, Illumina [20825802] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	12q24.12		rs11066008-G	0.322630856	4E-17		1.2887155	[1.214687968-1.367254458]	Illumina [8919992] (imputed)	N
1440	chr12	112140668	112140669	rs11066008	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal overload gout	486 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.12	ACAD10, ALDH2	rs11066008-A	0.643	4E-12		1.79	[1.52-2.11]	Illumina [7206774] (imputed)	N
1440	chr12	112151148	112151149	rs527760788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.12		rs527760788-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1440	chr12	112151741	112151742	rs847888	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	12q24.12		rs847888-A	0.3021	4E-10		0.0128	[-0.01229-0.03789] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1440	chr12	112151741	112151742	rs847888	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12q24.12	NR	rs847888-A	0.6316	4E-7		0.4775	[0.29-0.66] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1440	chr12	112158965	112158966	rs630616	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.12	ACAD10	rs630616-?		2E-8		0.0293	[0.019-0.039] unit decrease	Illumina [31500000] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	2E-31		0.0389	[0.032-0.045] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.24537	2E-31		0.0389033	[0.032-0.045] unit increase	Illumina [13478778] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.245367	7E-41		0.0489372	[0.042-0.056] unit increase	Illumina [13479135] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	8E-17		0.0328	[0.025-0.04] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.247155	8E-17		0.0328041	[0.025-0.041] unit decrease	Illumina [13477769] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	12q24.12		rs11066015-A	NR	1E-23		0.0986	[0.079-0.118] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	12q24.12		rs11066015-A	0.245803358	1E-23		0.09859379	[0.079-0.118] unit increase	Illumina [13429980] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	3E-91		0.0852	[0.077-0.093] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	4E-129		0.1027	[0.094-0.111] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.247488	5E-33		0.0668995	[0.056-0.078] unit increase	Illumina [13461863] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	5E-33		0.0669	[0.056-0.078] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	1E-14		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.246515	1E-14		0.0180315	[0.013-0.023] unit decrease	Illumina [13479295] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	0.245444	2E-109		0.122134	[0.11-0.13] unit decrease	Illumina [13465896] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	2E-109		0.1221	[0.11-0.13] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q24.12		rs11066015-A	0.244839302	3E-15		0.25901282	[0.19-0.32] unit increase	Illumina [13429311] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12q24.12		rs11066015-A	0.247706187	1E-21		0.23785304	[0.19-0.29] unit decrease	Illumina [13428894] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12q24.12		rs11066015-A	NR	1E-21		0.2379	[0.19-0.29] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	12q24.12		rs11066015-A	0.24454956	1E-17		0.23340699	[0.18-0.29] unit increase	Illumina [13427899] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q24.12		rs11066015-A	NR	4E-31		0.0457	[0.038-0.053] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q24.12		rs11066015-A	NR	2E-14		0.2056	[0.15-0.26] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-to-hip ratio adjusted for BMI	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.12	ACAD10	rs11066015-A	0.158	2E-14	(male)	0.004	[0.002-0.006] unit decrease	NR [8056211] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q24.12	ACAD10	rs11066015-?	NR	9E-79		0.236828	[0.21-0.26] unit increase	Illumina [19707525] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.12	NR	rs11066015-A	NR	8E-6		1.28	NR	Affymetrix [352228] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	12q24.12		rs11066015-A	0.239580915	1E-13		0.86299574	[0.82991439-0.897395817]	Illumina [8919992] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.12	ACAD10	rs11066015-A	0.153	7E-10		0.1481	[0.1-0.2] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1440	chr12	112168008	112168009	rs11066015	31320941	Igarashi M	2019-07-05	Genes Nutr	Identification of the 12q24 locus associated with fish intake frequency by genome-wide meta-analysis in Japanese populations.	Fish intake frequency	12,603 Japanese ancestry individuals	NA	12q24.12	ACAD10	rs11066015-A	0.265	5E-11		0.174	[0.12-0.23] unit decrease	Illumina [296675]	N
1440	chr12	112168008	112168009	rs11066015	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.12	ACAD10	rs11066015-G		3E-19		1.5384616		Illumina [31245]	N
1440	chr12	112168008	112168009	rs11066015	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	12q24.12	ACAD10	rs11066015-A	0.311	1E-10		8.82	[6.14-11.50] umol/L decrease	Illumina [~ 244000]	N
1440	chr12	112168008	112168009	rs11066015	23364394	Lee JY	2013-01-31	J Hum Genet	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases, 3,591 Korean ancestry controls	3,052 Japanese ancestry cases, 4,976 Japanese ancestry controls	12q24.12	RPL6-PTPN11, ACAD10, ALDH2, C12orf51	rs11066015-A	NR	5E-11		1.41	[1.27-1.56]	Affymetrix [521786]	N
1440	chr12	112168008	112168009	rs11066015	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.12	ACAD10	rs11066015-A	0.19	7E-21		1.38	[1.29-1.48]	Affymetrix [666141]	N
1440	chr12	112179470	112179471	rs4766897	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		12q24.12	ACAD10	rs4766897-?	NR	4E-12		0.009	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1440	chr12	112190437	112190438	rs6490294	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	12q24.12	NR	rs6490294-?	NR	5E-8		2.993432	[1.92-4.07] unit increase	Illumina [30743395] (imputed)	N
1440	chr12	112190437	112190438	rs6490294	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	12q24.12	ACAD10	rs6490294-A	0.337	5E-9		4.38	[2.91-5.85] 10^9 L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
1440	chr12	112197596	112197597	rs79648590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs79648590-A	NR	3E-24		0.0474	[0.038-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1441	chr12	112200149	112200150	rs2013002	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.12	ALDH2	rs2013002-T	0.4	9E-21	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112200149	112200150	rs2013002	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	ALDH2	rs2013002-T	0.44	2E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112200149	112200150	rs2013002	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	ALDH2	rs2013002-T	0.39	5E-13	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112200149	112200150	rs2013002	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	ALDH2	rs2013002-T	0.44	4E-39	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112200149	112200150	rs2013002	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.12	ALDH2	rs2013002-T	0.45	2E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112210873	112210874	rs191252491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	12q24.12		rs191252491-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1441	chr12	112211832	112211833	rs2238151	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.12	ALDH2	rs2238151-C	0.412078433433247	3E-12		0.3507814	[0.25-0.45] unit decrease	Illumina [247039]	N
1441	chr12	112211832	112211833	rs2238151	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	12q24.12	ALDH2	rs2238151-T	0.66	1E-6	(FS)	1.13	[1.08-1.19]	Affymetrix, Illumina [NR] (imputed)	N
1441	chr12	112212873	112212874	rs75852434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.12		rs75852434-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q24.12		rs4646776-C	NR	7E-28		0.1047	[0.086-0.124] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	12q24.12		rs4646776-C	0.245898	4E-129		0.102718	[0.094-0.111] unit decrease	Illumina [13476299] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	12q24.12		rs4646776-C	NR	3E-15		0.2583	[0.19-0.32] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	998 European ancestry cases, 475,308 European ancestry controls, 1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	12q24.12		rs4646776-C	NR	1E-25		0.4821	[0.39-0.57] unit increase	Affymetrix, Illumina [25843129] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	12q24.12		rs4646776-C	0.245206621	1E-25		0.4820564	[0.39-0.57] unit increase	Illumina [13427188] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-to-hip ratio adjusted for BMI	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.12	ALDH2	rs4646776-C	0.158	4E-14	(male)	0.004	[0.002-0.006] unit decrease	NR [8056211] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.12	ALDH2	rs4646776-?		5E-9		0.69	[0.61-0.78]	Illumina [9899436] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.12		rs4646776-G	NR	2E-17	(East Asian)			Affymetrix [NR] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.12		rs4646776-A	NR	8E-31	(East Asian)			Affymetrix [NR] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33093602	Chen IC	2020-10-22	Sci Rep	CUX2, BRAP and ALDH2 are associated with metabolic traits in people with excessive alcohol consumption.	Gamma glutamyl transferase levels	18,363 Taiwanese individuals	NA	12q24.12	ALDH2	rs4646776-?	NR	2E-6				Affymetrix [6410722] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33093602	Chen IC	2020-10-22	Sci Rep	CUX2, BRAP and ALDH2 are associated with metabolic traits in people with excessive alcohol consumption.	Excessive alcohol consumption	1,945 Taiwanese cases, 16,418 Taiwanese controls	NA	12q24.12	ALDH2	rs4646776-?	NR	2E-96				Affymetrix [6410722] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q24.12	ALDH2	rs4646776-C	0.263	1E-7		0.039	[0.025-0.053] cups per day increase	Illumina [5256047] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.12	NR	rs4646776-C	NR	5E-7		1.322	NR	Affymetrix [352228] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Esophageal cancer	1,300 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	12q24.12		rs4646776-C	0.239775697	2E-25		1.6248133	[1.483142071-1.780017247]	Illumina [8919992] (imputed)	N
1441	chr12	112230018	112230019	rs4646776	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.12	ALDH2	rs4646776-G	0.722	6E-16		1.86	[1.60-2.16]	Illumina [7206774] (imputed)	N
1441	chr12	112233017	112233018	rs10744777	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (small artery occlusion)	up to 2,252 European ancestry cases, up to 381 African ancestry cases, up to 552 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	47 African ancestry cases, 133 East Asian ancestry cases, 1,847 European ancestry cases, 85 Hispanic cases, 314 South Asian ancestry cases, 239 African ancestry controls, 329 East Asian ancestry controls, 217,755 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry stroke controls	12q24.12	ALDH2	rs10744777-T	0.667	3E-9	(CCSp)	1.17	[1.11-1.23]	Illumina [up to 15400000] (imputed)	N
1441	chr12	112233017	112233018	rs10744777	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke	14,300 European ancestry cases, 1,609 African ancestry cases, 942 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	996 African ancestry cases, 219 East Asian ancestry cases, 17,334 European ancestry cases, 548 Hispanic cases, 2,385 South Asian ancestry cases, 5,811 African ancestry controls, 329 East Asian ancestry controls, 350,928 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	12q24.12	ALDH2	rs10744777-T	0.667	4E-9		1.07	[1.05-1.09]	Illumina [up to 15400000] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	4E-24		0.2346	[0.19-0.28] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.12		rs671-A	0.237751126	4E-24		0.2346118	[0.19-0.28] unit increase	Illumina [13425416] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q24.12		rs671-A	NR	1E-56		0.0616	[0.054-0.069] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.247611	1E-56		0.0615904	[0.054-0.069] unit decrease	Illumina [13477770] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q24.12		rs671-A	NR	7E-69		0.0718	[0.064-0.08] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.245054	8E-69		0.0718278	[0.064-0.08] unit decrease	Illumina [13475706] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	1E-101		0.3344	[0.3-0.36] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.12		rs671-A	0.237751126	1E-101		0.33438632	[0.3-0.36] unit increase	Illumina [13427135] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	1E-29		0.1581	[0.13-0.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	12q24.12		rs671-A	0.246237838	1E-29		0.15810503	[0.13-0.19] unit increase	Illumina [13429980] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q24.12		rs671-A	0.246237838	6E-28		0.104733795	[0.086-0.123] unit decrease	Illumina [13134967] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	3E-22		0.1042	[0.083-0.125] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12q24.12		rs671-A	0.246237838	3E-22		0.10422246	[0.083-0.125] unit increase	Illumina [13429980] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.246006	2E-91		0.085249	[0.077-0.093] unit decrease	Illumina [13476266] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	12q24.12		rs671-A	NR	4E-39		0.0552	[0.047-0.063] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.246387	5E-39		0.0551782	[0.047-0.063] unit decrease	Illumina [13477028] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.24763	2E-63		0.0670499	[0.059-0.075] unit decrease	Illumina [13477767] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12q24.12		rs671-A	0.249890483	2E-18		0.10974937	[0.085-0.134] unit decrease	Illumina [13429439] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	2E-18		0.1097	[0.085-0.134] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12q24.12		rs671-A	NR	5E-11		0.0265	[0.019-0.034] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.24546	5E-11		0.0264462	[0.019-0.034] unit decrease	Illumina [13476509] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q24.12		rs671-A	NR	7E-411		0.1745	[0.17-0.18] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.250237	4E-411		0.174555	[0.17-0.18] unit decrease	Illumina [13476165] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	12q24.12		rs671-A	0.247618	9E-54		0.0626526	[0.055-0.071] unit decrease	Illumina [13477770] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	12q24.12		rs671-A	0.246965222	1E-16		0.27968714	[0.21-0.35] unit decrease	Illumina [13429980] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	1E-16		0.2797	[0.21-0.35] unit decrease	Affymetrix, Illumina [20457790] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	12q24.12		rs671-A	NR	2E-17		0.233	[0.18-0.29] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1441	chr12	112241765	112241766	rs671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q24.12		rs671-A	0.248091091	2E-14		0.2056489	[0.15-0.26] unit decrease	Illumina [13427194] (imputed)	N
1441	chr12	112241765	112241766	rs671	34073884	Sasaki T	2021-05-24	Genes (Basel)	<i>ALDH2</i> p.E504K Variation and Sex Are Major Factors Associated with Current and Quitting Alcohol Drinking in Japanese Oldest Old.	Alcohol drinking status (current drinker vs non-current drinker)	408 Japanese ancestry current drinking cases, 607 Japanese ancestry non-current drinking controls	NA	12q24.12	ALDH2	rs671-?	NR	3E-31		3.8	[NR]	Illumina [6380000] (imputed)	N
1441	chr12	112241765	112241766	rs671	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-to-hip ratio adjusted for BMI	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.12	ALDH2	rs671-A	0.158	3E-14	(male)	0.004	[0.002-0.006] unit decrease	NR [8056211] (imputed)	N
1441	chr12	112241765	112241766	rs671	33632354	Suzuki T	2021-02-26	Br J Nutr	A Genome-wide Association Study on Confection Consumption in a Japanese Population- The Japan Multi-Institutional Collaborative Cohort study.	Confectionary intake	14,073 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-A	0.2563	9E-31		1.7045	[1.42-1.99] unit increase	Illumina [8504983] (imputed)	N
1441	chr12	112241765	112241766	rs671	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.12	ALDH2	rs671-A	0.33	2E-15		0.77	[0.72-0.82]	Affymetrix [NR]	N
1441	chr12	112241765	112241766	rs671	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-A	0.266	2E-70		0.22	[0.2-0.24] unit increase	Illumina [5299861] (imputed)	N
1441	chr12	112241765	112241766	rs671	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Ischemic stroke	17,671 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	12q24.12		rs671-A	0.242847395	2E-18		0.8884053	[0.865127367-0.912309631]	Illumina [8919992] (imputed)	N
1441	chr12	112241765	112241766	rs671	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.12	ALDH2	rs671-G	0.725	3E-54		1.93	[1.78-2.10]	Illumina [7206774] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Yoghurt consumption	83,150 Japanese ancestry men, 69,757 Japanese ancestry women	NA	12q24.12	ALDH2	rs671-?	NR	6E-21		0.113	[0.09-0.136] unit increase	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Tofu consumption	152,943 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	3E-25		0.105	[0.086-0.124] unit decrease	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Natto consumption	152,678 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	3E-24		0.114	[0.093-0.135] unit decrease	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Milk consumption	152,965 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	6E-18		0.113	[0.088-0.138] unit increase	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Green tea consumption	152,653 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	3E-18		0.09	[0.07-0.11] unit increase	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Fish intake frequency	153,048 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	7E-50		0.134	[0.12-0.15] unit decrease	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	4E-153		0.354	[0.33-0.38] unit increase	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinks per week)	58,610 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	1E-450		0.43	[0.41-0.45] unit decrease	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	12q24.12	ALDH2	rs671-?	NR	1E-4740		1.815	[1.79-1.84] unit decrease	Illumina [6108828] (imputed)	N
1441	chr12	112241765	112241766	rs671	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.12	ALDH2	rs671-?	NR	2E-14		0.029849611	[0.022-0.038] unit decrease	Illumina [27896057] (imputed)	N
1441	chr12	112241765	112241766	rs671	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	12q24.12	ALDH2	rs671-C	0.76	4E-14		1.47	[1.33-1.63]	Illumina [569200]	N
1441	chr12	112241765	112241766	rs671	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Aspartate aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.12	ALDH2	rs671-A	0.1567	5E-13		0.0541	[0.039-0.069] unit decrease	Affymetrix [at least 805769] (imputed)	N
1441	chr12	112241765	112241766	rs671	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.12	ALDH2	rs671-A	0.73	4E-15		1.41		Illumina [up to 244000]	N
1441	chr12	112241765	112241766	rs671	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.12	ALDH2	rs671-A		3E-19		1.54		Illumina [31245]	N
1441	chr12	112241765	112241766	rs671	29408531	Zhang D	2018-02-02	Gene	The polymorphism rs671 at ALDH2 associated with serum uric acid levels in Chinese Han males: A genome-wide association study.	Serum uric acid levels	1,634 Han Chinese ancestry individuals	2,818 Han Chinese ancestry individuals	12q24.12	ALDH2	rs671-A	NR	1E-8		0.016	[NR] unit decrease Discovery	Illumina [532842]	N
1441	chr12	112241765	112241766	rs671	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-A	0.312	3E-10		8.62	[5.94-11.3] umol/L decrease	Illumina [~ 244000]	N
1441	chr12	112241765	112241766	rs671	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	12q24.12	ALDH2	rs671-?	0.9995	2E-72	(East Asian)	2.5	[2.00-3.33]	Affymetrix [NR] (imputed)	N
1441	chr12	112241765	112241766	rs671	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	Metabolic syndrome	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	5,514 Han Chinese ancestry cases, 5,464 Han Chinese ancestry controls	12q24.12	ALDH2	rs671-G	0.71	5E-28		1.41		Illumina [4642479] (imputed)	N
1441	chr12	112241765	112241766	rs671	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	12q24.12	SH2B3	rs671-?	NR	1E-8				NR [2500000] (imputed)	N
1441	chr12	112241765	112241766	rs671	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	12q24.12	SH2B3	rs671-?	NR	1E-8				NR [2500000] (imputed)	N
1441	chr12	112241765	112241766	rs671	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	12q24.12	SH2B3	rs671-?	NR	1E-8				NR [2500000] (imputed)	N
1441	chr12	112241765	112241766	rs671	26174136	Setoh K	2015-07-15	Nat Commun	Three missense variants of metabolic syndrome-related genes are associated with alpha-1 antitrypsin levels.	Serum alpha1-antitrypsin levels	3,294 Japanese ancestry individuals	6,065 Japanese ancestry individuals	12q24.12	ALDH2	rs671-A	0.269	2E-23		2.83	[2.28-3.38] mg dl-1 increase	Illumina [6569727] (imputed)	N
1441	chr12	112241765	112241766	rs671	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	12q24.12	ALDH2	rs671-G	NR	1E-15	(fixed)	1.156203		Illumina [87827]	N
1441	chr12	112241765	112241766	rs671	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	12q24.12	ALDH2	rs671-G	0.76	3E-11		0.0378	[0.027-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1441	chr12	112241765	112241766	rs671	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	12q24.12	ALDH2	rs671-?		5E-26		1.81	unit decrease	Illumina [247725]	N
1441	chr12	112241765	112241766	rs671	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Alcohol dependence	102 Han Chinese ancestry cases, 212 Han Chinese ancestry controls	NA	12q24.12	ALDH2	rs671-?	NR	5E-8		0.88	unit increase	Illumina [247725]	N
1441	chr12	112241765	112241766	rs671	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Alcohol consumption (max-drinks)	272 Han Chinese ancestry individuals	NA	12q24.12	ALDH2	rs671-?	NR	1E-16		0.16	unit increase	Illumina [247725]	N
1441	chr12	112241765	112241766	rs671	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	12q24.12	ALDH2	rs671-A	0.27	3E-10		0.0045	[0.0031-0.0059] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
1441	chr12	112241765	112241766	rs671	22286173	Low SK	2012-01-27	Hum Mol Genet	Genome-wide association study for intracranial aneurysm in the Japanese population identifies three candidate susceptible loci and a functional genetic variant at EDNRA.	Intracranial aneurysm	1,383 Japanese ancestry cases, 5,484 Japanese ancestry controls	1,048 Japanese ancestry cases, 7,212 Japanese ancestry controls	12q24.12	ALDH2	rs671-C	0.746	3E-6		1.24	[1.148-1.338]	Illumina [565149]	N
1441	chr12	112241765	112241766	rs671	22171074	Tan A	2011-12-30	Hum Mol Genet	A genome-wide association and gene-environment interaction study for serum triglycerides levels in a healthy Chinese male population.	Triglycerides	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	12q24.12	ALDH2	rs671-?	NR	2E-6				Illumina [1940243] (imputed)	N
1441	chr12	112241765	112241766	rs671	21971053	Takeuchi F	2011-10-05	Eur J Hum Genet	Genome-wide association study of coronary artery disease in the Japanese.	Coronary heart disease	806 Japanese ancestry cases, 1,337 Japanese ancestry controls	3,593 Japanese ancestry cases, 6,335 Japanese ancestry controls	12q24.12	ALDH2	rs671-A	0.23	2E-34		1.43	[1.35-1.51]	Illumina [451382]	N
1441	chr12	112241765	112241766	rs671	21372407	Takeuchi F	2011-03-01	Circ J	Confirmation of ALDH2 as a Major locus of drinking behavior and of its variants regulating multiple metabolic phenotypes in a Japanese population.	Drinking behavior	733 Japanese ancestry cases, 729 Japanese ancestry controls	2,794 Japanese ancestry drinkers, 1,521 Japanese ancestry chance drinkers, 1,351 Japanese ancestry non-drinkers	12q24.12	BRAP, ALDH2	rs671-?	0.75	4E-211		6.25	[5.56-7.14]	Illumina [456827]	N
1441	chr12	112241765	112241766	rs671	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	12q24.12	ALDH2	rs671-A	0.26	7E-10		0.083	[0.058-0.108] unit decrease	Illumina [561583]	N
1441	chr12	112241765	112241766	rs671	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	12q24.12	ALDH2	rs671-A	0.26	5E-9	(GGT)	0.123	[0.082-0.164] unit decrease	Illumina [561583]	N
1441	chr12	112241765	112241766	rs671	19698717	Cui R	2009-08-18	Gastroenterology	Functional variants in ADH1B and ALDH2 coupled with alcohol and smoking synergistically enhance esophageal cancer risk.	Esophageal cancer	182 Japanese ancestry cases, 927 Japanese ancestry controls	782 Japanese ancestry cases, 1,898 Japanese ancestry controls	12q24.12	BRAP, ALDH2	rs671-A	NR	3E-24		1.67	[1.58-1.76]	Illumina [359195]	N
1441	chr12	112245169	112245170	rs11066028	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	12q24.12	ALDH2	rs11066028-?	NR	9E-8		0.0850756	[0.054-0.116] unit decrease	Illumina [19707525] (imputed)	N
1441	chr12	112248760	112248761	rs530203431	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.12	RP3-462E2.3	rs530203431-G	0.0012	5E-14		0.4213545	[0.31-0.53] unit increase	Affymetrix [~ 2500000] (imputed)	N
1441	chr12	112248760	112248761	rs530203431	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.12	RP3-462E2.3	rs530203431-G	0.0012	2E-12		0.392977	[0.28-0.5] unit increase	Affymetrix [~ 2500000] (imputed)	N
1441	chr12	112256041	112256042	rs9971942	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.12	NR	rs9971942-?	NR	5E-8		0.0098147	[0.0063-0.0133] unit decrease	Affymetrix [805426] (imputed)	N
1441	chr12	112256761	112256762	rs7305242	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.12	ALDH2	rs7305242-T	0.4243	2E-13	(East Asian)	0.0468	[0.034-0.059] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1441	chr12	112256761	112256762	rs7305242	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q24.12	ALDH2, MAPKAPK5-AS1	rs7305242-C	0.576	2E-8	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1441	chr12	112258578	112258579	rs60505450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.12		rs60505450-?	NR	3E-37				NR [~ 8900000] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.12	MAPKAPK5	rs11513729-C	0.58693	2E-8		0.00799293	[0.0052-0.0108] unit increase	Affymetrix [12370749]	N
1441	chr12	112273498	112273499	rs11513729	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.12	MAPKAPK5-AS1	rs11513729-T	0.4	6E-20	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	MAPKAPK5-AS1	rs11513729-T	0.4	2E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.12	MAPKAPK5-AS1	rs11513729-T	0.4	8E-40	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.12	NR	rs11513729-C	0.588045	4E-11		0.015227	[0.011-0.02] unit decrease	Affymetrix [11535925] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.12	NR	rs11513729-?	NR	7E-8		0.0476	[0.03-0.065] unit increase	Illumina [at least 560000] (imputed)	N
1441	chr12	112273498	112273499	rs11513729	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	12q24.12	NR	rs11513729-?	NR	3E-11		6.63	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1441	chr12	112277083	112277084	rs12370770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.12	NR	rs12370770-T	NR	2E-10		0.0342	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1441	chr12	112277083	112277084	rs12370770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.12	NR	rs12370770-T	NR	3E-9		0.0304	[0.02-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1441	chr12	112293571	112293572	rs769623925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.12	MAPKAPK5	rs769623925-G	0.00164299999999995	3E-12		0.20335688	[0.15-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr12	112301728	112301729	rs142324638	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.12	MAPKAPK5	rs142324638-?	NR	1E-140	(conditional)	0.608	NR L increase	Affymetrix [9390170] (imputed)	N
1442	chr12	112329286	112329287	rs11066065	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.12		rs11066065-C	NR	2E-16	(East Asian)			Affymetrix [NR] (imputed)	N
1442	chr12	112337923	112337924	rs78069066	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q24.13	MAPKAPK5, TMEM116	rs78069066-A	0.266	1E-7		0.04	[0.024-0.056] cups per day increase	Illumina [5256047] (imputed)	N
1442	chr12	112337923	112337924	rs78069066	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cirrhosis	2,184 Japanese ancestry cases, 210,269 Japanese ancestry controls	NA	12q24.13		rs78069066-A	0.23114833	1E-12		0.7572751	[0.701480784-0.817507204]	Illumina [8919992] (imputed)	N
1442	chr12	112337923	112337924	rs78069066	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	ADAM1A	rs78069066-A	0.1516	3E-9		0.1435	[0.096-0.191] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1442	chr12	112354530	112354531	rs7294902	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.13	TMEM116	rs7294902-C	0.201614453762906	6E-9		0.34577718	[0.23-0.46] unit decrease	Illumina [247039]	N
1442	chr12	112357983	112357984	rs117614539	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs117614539-T	NR	3E-14		0.0559	[0.042-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1442	chr12	112363238	112363239	rs75468472	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs75468472-T	0.985	1E-16				Affymetrix [10369434] (imputed)	N
1442	chr12	112371459	112371460	rs141043717	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.13	TMEM116	rs141043717-A	0.2849	4E-15		0.03753322	[0.028-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1442	chr12	112375989	112375990	rs3752630	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.13	TMEM116	rs3752630-C		2E-53		0.042	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1442	chr12	112378364	112378365	rs2339905	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.13		rs2339905-A	0.897307	5E-8		0.0403777	[0.026-0.055] unit increase	NR [11722792] (imputed)	N
1442	chr12	112393685	112393686	rs111286706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs111286706-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1442	chr12	112413024	112413025	rs79423041	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs79423041-T	0.953	2E-50				Affymetrix [10369434] (imputed)	N
1442	chr12	112425745	112425746	rs4767264	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q24.13	NR	rs4767264-C	0.2	5E-6		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
1442	chr12	112436194	112436195	rs11066120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.13		rs11066120-C	0.90883	3E-9		0.0419549	[0.028-0.056] unit decrease	NR [11722792] (imputed)	N
1442	chr12	112436194	112436195	rs11066120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.13		rs11066120-C	0.908834	1E-10		0.0443734	[0.031-0.058] unit decrease	NR [11722792] (imputed)	N
1442	chr12	112436194	112436195	rs11066120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.13		rs11066120-C	0.90883	1E-9		0.0423669	[0.029-0.056] unit decrease	NR [11722792] (imputed)	N
1442	chr12	112436194	112436195	rs11066120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.13		rs11066120-C	0.908834	6E-10		0.0435707	[0.03-0.057] unit decrease	NR [11722792] (imputed)	N
1443	chr12	112463295	112463296	rs4767293	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.13	NAA25	rs4767293-A	0.64	6E-21	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1443	chr12	112465128	112465129	rs1047578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	12q24.13		rs1047578-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	12q24.13		rs11066132-T	0.16	3E-15				NR [7104359] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.13		rs11066132-T	0.23415952	4E-22		0.14824118	[0.12-0.18] unit increase	Illumina [13427711] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	12q24.13		rs11066132-T	NR	4E-22		0.1482	[0.12-0.18] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	12q24.13		rs11066132-T	0.241006406	6E-14		0.15851188	[0.12-0.2] unit decrease	Illumina [13428297] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	12q24.13		rs11066132-T	NR	6E-14		0.1585	[0.12-0.2] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	12q24.13		rs11066132-T	NR	9E-19		0.1514	[0.12-0.18] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	12q24.13		rs11066132-T	0.234257168	9E-19		0.15140036	[0.12-0.18] unit increase	Illumina [13426705] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.13	NAA25	rs11066132-C	0.157	8E-21	(male)	0.01	[0.008-0.012] unit decrease	NR [8056211] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.13	NAA25	rs11066132-?		3E-8		0.7	[0.62-0.79]	Illumina [9899436] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	33632354	Suzuki T	2021-02-26	Br J Nutr	A Genome-wide Association Study on Confection Consumption in a Japanese Population- The Japan Multi-Institutional Collaborative Cohort study.	Confectionary intake	14,073 Japanese ancestry individuals	NA	12q24.13	NAA25	rs11066132-T	0.2526	4E-30		1.7512	[1.45-2.05] unit increase	Illumina [8504983] (imputed)	N
1443	chr12	112468205	112468206	rs11066132	32895509	Suzuki T	2020-09-07	Eur J Clin Nutr	A genome-wide association study on fish consumption in a Japanese population-the Japan Multi-Institutional Collaborative Cohort study.	Fish consumption	13,739 Japanese ancestry individuals	2,845 Japanese ancestry individuals	12q24.13	BRAP, ACAD10, ALDH2, NAA25, HECTD4	rs11066132-T	0.259	6E-11		2.247	[1.57-2.92] unit decrease	Illumina [8504983] (imputed)	N
1443	chr12	112471715	112471716	rs80288216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs80288216-C	NR	1E-10		0.0376	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1443	chr12	112471715	112471716	rs80288216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs80288216-C	NR	8E-12		0.0399	[0.029-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1443	chr12	112477054	112477055	rs12231744	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.13	NAA25	rs12231744-C		1E-9		1.3513513		Illumina [31245]	N
1443	chr12	112486817	112486818	rs17696736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	12q24.13		rs17696736-A	0.569746	2E-9		0.0236505	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM2	5,358 Icelandic ancestry individuals	NA	12q24.13		rs17696736-G	0.3659	3E-12		0.135462	[0.097-0.174] unit increase	Illumina [7506463] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12q24.13	NAA25	rs17696736-A	0.5692	5E-12		0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.13	NAA25	rs17696736-A	0.5816	2E-13		0.0282	[0.021-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.13	NR	rs17696736-A	0.4183	1E-7	(men)	0.0359	[0.023-0.049] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	12q24.13	NAA25	rs17696736-A	0.5738	3E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	12q24.13	NAA25	rs17696736-G	0.428	8E-11				Affymetrix [28000000] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.13	NAA25	rs17696736-A	0.56	5E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	NAA25	rs17696736-A	0.6	6E-12	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	NAA25	rs17696736-A	0.59	1E-34	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	NAA25	rs17696736-A	0.56	3E-33	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	NR	1E-7		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	0.553	2E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	NR	4E-7		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	0.553	3E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	NR	6E-8		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.13	NR	rs17696736-A	0.553	3E-7	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.13	NR	rs17696736-A	0.571276	1E-10		0.0145323	[0.01-0.019] unit decrease	Affymetrix [11535925] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.13	NAA25	rs17696736-G	0.383155352628626	2E-17		0.41001332	[0.32-0.5] unit increase	Illumina [247039]	N
1443	chr12	112486817	112486818	rs17696736	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	12q24.13	SH2B3	rs17696736-G	NR	6E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1443	chr12	112486817	112486818	rs17696736	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	12q24.13	C12orf30	rs17696736-G	NR	6E-18				Affymetrix [up to 335565]	N
1443	chr12	112486817	112486818	rs17696736	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	12q24.13	SH2B3, TRAFD1, PTPN11, LNK	rs17696736-G	0.42	2E-14		1.34	[1.16-1.53]	Affymetrix [469557]	N
1443	chr12	112486817	112486818	rs17696736	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	12q24.13	C12orf30	rs17696736-G	0.42	2E-16		1.22	[1.15-1.28]	Affymetrix [NR]	N
1443	chr12	112495397	112495398	rs532308916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.13	NAA25	rs532308916-T	4.29000000000013E-4	2E-36		0.985331	[0.83-1.14] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112495397	112495398	rs532308916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.13	NAA25	rs532308916-T	4.29000000000013E-4	2E-34		0.9568851	[0.8-1.11] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112501765	112501766	rs7978068	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	NR	rs7978068-?	NR	5E-8		0.010057	[0.0064-0.0137] unit decrease	Affymetrix [805426] (imputed)	N
1443	chr12	112510403	112510404	rs7298532	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q24.13	NAA25	rs7298532-T	0.7213	1E-10		1.0273678		Affymetrix [11880941] (imputed)	N
1443	chr12	112510403	112510404	rs7298532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	12q24.13		rs7298532-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1443	chr12	112511065	112511071	rs535378844	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.13	intergenic	rs535378844-T	0.6215	2E-11		0.2005	[0.14-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	NR	5E-62		0.0738	[0.065-0.082] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	0.242648	6E-18		0.0474204	[0.037-0.058] unit increase	Illumina [13466143] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	0.242494	3E-31		0.0509771	[0.042-0.06] unit increase	Illumina [13478792] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	NR	1E-105		0.0987	[0.09-0.108] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	0.243242	1E-105		0.0987246	[0.09-0.108] unit decrease	Illumina [13478956] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	NR	3E-52		0.0672	[0.059-0.076] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	12q24.13		rs116873087-C	0.242831	3E-52		0.0671594	[0.059-0.076] unit decrease	Illumina [13478866] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.13	NAA25	rs116873087-C	0.158	2E-20	(male)	0.01	[0.008-0.012] unit decrease	NR [8056211] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q24.13	NAA25	rs116873087-C	0.262	6E-8		0.043	[0.027-0.059] cups per day increase	Illumina [5256047] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.13	NR	rs116873087-C	NR	2E-7		1.343	NR	Affymetrix [352228] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	A25	rs116873087-C	0.1531	4E-10		0.1498	[0.1-0.2] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1443	chr12	112511912	112511913	rs116873087	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.13	NAA25, ALDH2	rs116873087-G	0.749	2E-27		2.38	[2.03-2.78]	Illumina [7206774] (imputed)	N
1443	chr12	112518802	112518803	rs11066150	34018994	Xu JK	2021-03-22	Chin Med J (Engl)	Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer.	Breast cancer	1,496 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	4,138 Han Chinese ancestry cases, 5,051 Han Chinese ancestry controls	12q24.13	NR	rs11066150-?	NR	2E-8		1.13	[1.07-1.20]	Illumina [up to 800000]	N
1443	chr12	112518802	112518803	rs11066150	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q24.13	NR	rs11066150-G	0.58	3E-13		1.25	[NR]	Illumina [803202]	N
1443	chr12	112521447	112521448	rs4767364	21437268	McKay JD	2011-03-17	PLoS Genet	A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium.	Oral cavity and pharyngeal cancer	2,091 European ancestry cases, 8,334 European ancestry controls	6,574 European ancestry cases, 7,892 European ancestry controls	12q24.13	ALDH2	rs4767364-A	0.29	2E-8		1.13	[1.08-1.18]	Illumina [294620]	N
1443	chr12	112524722	112524722	rs10661645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.13	NAA25	rs10661645-CAGG	0.9389	7E-58		0.1268218	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1443	chr12	112524722	112524722	rs10661645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.13	NAA25	rs10661645-CAGG	0.9388	2E-54		0.122307	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1443	chr12	112536599	112536600	rs112693912	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs112693912-T	0.968	3E-16				Affymetrix [10369434] (imputed)	N
1443	chr12	112542639	112542639	rs570920196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	12q24.13		rs570920196-C	0.509148	2E-8		0.0221535	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1443	chr12	112542639	112542639	rs570920196	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	12q24.13		rs570920196-C	0.509141	2E-8		0.0219247	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1443	chr12	112545196	112545197	rs73412716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.13		rs73412716-G	0.930732	3E-8		0.0451082	[0.029-0.061] unit increase	NR [11722792] (imputed)	N
1443	chr12	112545196	112545197	rs73412716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.13		rs73412716-G	0.930732	4E-8		0.0438143	[0.028-0.059] unit decrease	NR [11722792] (imputed)	N
1443	chr12	112545196	112545197	rs73412716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.13		rs73412716-G	0.930732	4E-11		0.0526186	[0.037-0.068] unit decrease	NR [11722792] (imputed)	N
1443	chr12	112545196	112545197	rs73412716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	12q24.13		rs73412716-G	0.930732	9E-12		0.0545033	[0.039-0.07] unit decrease	NR [11722792] (imputed)	N
1443	chr12	112545196	112545197	rs73412716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	12q24.13		rs73412716-G	0.930718	5E-9		0.0473421	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1443	chr12	112547825	112547826	rs142736021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs142736021-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1443	chr12	112553031	112553032	rs10850001	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	12q24.13	NAA25	rs10850001-A	0.4705	1E-9		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1443	chr12	112553031	112553032	rs10850001	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	12q24.13	NAA25	rs10850001-A	0.6288	3E-6		0.0033	[0.0019-0.0047] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1443	chr12	112553031	112553032	rs10850001	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	12q24.13	ALDH2, ATXN2, ACAD10, TMEM116	rs10850001-T	0.497	2E-11		6.717	NR z score increase	Illumina [26237160] (imputed)	N
1443	chr12	112574615	112574616	rs12231737	33632354	Suzuki T	2021-02-26	Br J Nutr	A Genome-wide Association Study on Confection Consumption in a Japanese Population- The Japan Multi-Institutional Collaborative Cohort study.	Confectionary intake	14,073 Japanese ancestry individuals	NA	12q24.13	TRAFD1	rs12231737-T	0.2619	3E-29		1.6963	[1.4-1.99] unit increase	Illumina [8504983] (imputed)	N
1443	chr12	112574615	112574616	rs12231737	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.13	NR	rs12231737-T	NR	5E-7		1.318	NR	Affymetrix [352228] (imputed)	N
1443	chr12	112574615	112574616	rs12231737	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Aspartate aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	TRAFD1	rs12231737-T	0.163	3E-13		0.0544	[0.04-0.069] unit decrease	Affymetrix [at least 805769] (imputed)	N
1443	chr12	112574615	112574616	rs12231737	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Alanine aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	TRAFD1	rs12231737-T	0.163	2E-8		0.0602	[0.039-0.081] unit decrease	Affymetrix [at least 805769] (imputed)	N
1443	chr12	112576831	112576832	rs535526948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.13	TRAFD1	rs535526948-A	9.8100000000001E-4	1E-14		0.2949597	[0.22-0.37] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112576831	112576832	rs535526948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.13	TRAFD1	rs535526948-A	9.98999999999972E-4	5E-55		0.598987	[0.52-0.67] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112576831	112576832	rs535526948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.13	TRAFD1	rs535526948-A	0.001	4E-52		0.58255714	[0.51-0.66] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112576831	112576832	rs535526948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.13	TRAFD1	rs535526948-A	9.82999999999956E-4	2E-11		0.2573711	[0.18-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1443	chr12	112583446	112583447	rs79680080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.13	NR	rs79680080-C	NR	3E-11		0.0497	[0.035-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1443	chr12	112583446	112583447	rs79680080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs79680080-C	NR	3E-9		0.0446	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1443	chr12	112583446	112583447	rs79680080	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.13	TRAFD1	rs79680080-C		1E-10		0.039	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1443	chr12	112589983	112589984	rs142334371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs142334371-T	0.982	2E-16				Affymetrix [10369434] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.13	NR	rs17630235-G	NR	5E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.13	NR	rs17630235-G	0.592473	8E-11		0.0147919	[0.01-0.019] unit decrease	Affymetrix [11535925] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.13	NR	rs17630235-?	NR	1E-8		0.0468	[0.031-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	12q24.13	TRAFD1, C12orf51	rs17630235-?	NR	3E-7		1.12	[1.06-1.18]	Illumina [at least 5000000] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.13	NR	rs17630235-G		5E-18		0.34	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.13	NR	rs17630235-G		6E-6	(Latino)	0.613	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.13	NR	rs17630235-G		3E-15		0.292	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	12q24.13	NR	rs17630235-G		3E-12	(EA)	0.271	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.13	NR	rs17630235-G		8E-46		0.341	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q24.13	BRAP, ACAD10, ALDH2, MAPKAPK5-AS1, MAPKAPK5, ADAM1A, TMEM116, ERP29, NAA25, HECTD4, RPL6, PTPN11	rs17630235-A	0.416143232383935	4E-12		0.019422049	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1444	chr12	112591685	112591686	rs17630235	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.13	TRAFD1	rs17630235-G	0.589	5E-7		0.015	[0.0092-0.0214] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1444	chr12	112591685	112591686	rs17630235	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.13	TRAFD1	rs17630235-G	0.584	6E-7	(EA)	0.016	[0.0095-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1444	chr12	112603371	112603372	rs59036878	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.13		rs59036878-G	0.936647	2E-9		0.0477802	[0.032-0.063] unit decrease	NR [11722792] (imputed)	N
1444	chr12	112609997	112609998	rs7970181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.13	HECTD4	rs7970181-T	0.0944700000000001	9E-64		0.067429714	[0.06-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1444	chr12	112610713	112610714	rs11066188	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.13	TRAFD1	rs11066188-?	NR	1E-59	(conditional)	0.115	NR L increase	Affymetrix [9390170] (imputed)	N
1444	chr12	112610713	112610714	rs11066188	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Diastolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	12q24.13	HECTD4	rs11066188-A	0.26	1E-7	(Hispanic)	0.7	[0.45-0.95] unit increase	Illumina [up to 196725]	N
1444	chr12	112610713	112610714	rs11066188	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	12q24.13	SH2B3, HECTD4	rs11066188-?	NR	9E-10		1.09		Illumina [109572]	N
1444	chr12	112618345	112618346	rs77215829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q24.13	NR	rs77215829-C	0.131	2E-11		0.0110005	[0.0078-0.0142] unit decrease	NR [9732723] (imputed)	N
1444	chr12	112618345	112618346	rs77215829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q24.13	NR	rs77215829-C	0.131	2E-10		0.024044668	[0.017-0.031] unit decrease	NR [~ 10000000] (imputed)	N
1444	chr12	112619897	112619897	rs202020787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.13	HECTD4	rs202020787-TA	0.09975	2E-10		0.047347944	[0.033-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1444	chr12	112619897	112619897	rs202020787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q24.13	HECTD4	rs202020787-TA	0.099762	3E-22		0.0361843	[0.029-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1444	chr12	112627349	112627350	rs144504271	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Skin flushing frequency	1,108 Japanese ancestry individuals	NA	12q24.13		rs144504271-A	0.245	1E-24		0.41	[0.33-0.49] unit increase	Illumina [6258233] (imputed)	N
1444	chr12	112627349	112627350	rs144504271	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.13		rs144504271-G	NR	2E-12	(East Asian)			Affymetrix [NR] (imputed)	N
1444	chr12	112627349	112627350	rs144504271	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	HECTD4	rs144504271-A	0.1497	1E-9		0.148	[0.1-0.2] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1444	chr12	112627349	112627350	rs144504271	29367735	Nakagawa-Senda H	2018-01-24	Sci Rep	A genome-wide association study in the Japanese population identifies the 12q24 locus for habitual coffee consumption: The J-MICC Study.	Coffee consumption	11,261 Japanese ancestry individuals	NA	12q24.13	HECTD4	rs144504271-A	0.265	2E-15		0.1887	[0.14-0.24] cups per day increase	Illumina [7094228] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	7E-10		0.2884957	[0.2-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	2E-10		0.2990035	[0.21-0.39] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	2E-9		0.2795155	[0.19-0.37] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	1E-9		0.2866277	[0.19-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	1E-9		0.2862801	[0.19-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112629666	112629667	rs555346412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	12q24.13	HECTD4	rs555346412-C	0.0017	2E-10		0.2997955	[0.21-0.39] unit increase	Affymetrix [~ 2500000] (imputed)	N
1444	chr12	112641376	112641377	rs2301712	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q24.13	HECTD4	rs2301712-G	0.01	1E-8		0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	12q24.13		rs2074356-A	NR	1E-8		0.0649	[0.043-0.087] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	12q24.13		rs2074356-A	0.218147957	1E-8		0.06490437	[0.043-0.087] unit increase	Illumina [13429980] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	33080986	Furukawa K	2020-10-18	Nutrients	A Genome-Wide Association Study Identifies the Association between the 12q24 Locus and Black Tea Consumption in Japanese Populations.	Tea consumption	12,140 Japanese ancestry individuals	118 Japanese ancestry individuals	12q24.13	HECTD4	rs2074356-T	0.243	2E-8		0.042	[0.026-0.058] cups per day increase	Illumina [5256047] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	33004991	Sutoh Y	2020-10-01	Sci Rep	ALDH2 genotype modulates the association between alcohol consumption and AST/ALT ratio among middle-aged Japanese men: a genome-wide G x E interaction analysis.	Aspartate aminotransferase to alanine aminotransferase ratio x alcohol consumption interaction	7,856 Japanese ancestry individuals	up to 4,388 Japanese ancestry individuals	12q24.13	NR	rs2074356-?	NR	9E-17		0.005	[0.003-0.007] unit increase	Illumina [7129678] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.13	NR	rs2074356-A	NR	7E-8		1.375	NR	Affymetrix [352228] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.13	HECTD4	rs2074356-A	0.32	3E-13		0.78	[0.73-0.83]	Affymetrix [NR]	N
1444	chr12	112645400	112645401	rs2074356	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	12q24.13	FLJ30092	rs2074356-?		8E-6				NR [327872]	N
1444	chr12	112645400	112645401	rs2074356	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	C12orf51	rs2074356-?		2E-9				Affymetrix [at least 805769] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	29367735	Nakagawa-Senda H	2018-01-24	Sci Rep	A genome-wide association study in the Japanese population identifies the 12q24 locus for habitual coffee consumption: The J-MICC Study.	Coffee consumption	6,312 Japanese ancestry individuals	4,949 Japanese ancestry individuals	12q24.13	HECTD4, MYL2, CUX2, BRAP, ACAD10, ALDH2, MAPKAPK5, NAA25, TRAFD1, RPL6, OAS2, DTX1	rs2074356-A	0.24	2E-16		0.192	[0.15-0.24] cups per day increase	Illumina [7094228] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	12q24.13	C12orf51	rs2074356-A	0.14	6E-48	(East Asian)	2.41		Affymetrix [NR] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	12q24.13	NR	rs2074356-A	NR	2E-10	(Asian)	0.004	[0.0028-0.0052] unit decrease	NR [2500000] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	C12orf51	rs2074356-T		6E-9	(2-hPG)	0.165	[0.11-0.22] mmol-1 decrease	Affymetrix [357789]	N
1444	chr12	112645400	112645401	rs2074356	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	C12orf51	rs2074356-T		6E-14	(FPG)	0.061	[0.045-0.077] mmol-1 decrease	Affymetrix [357789]	N
1444	chr12	112645400	112645401	rs2074356	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	C12orf51	rs2074356-T		1E-16	(1-hPG)	0.321	[0.24-0.40] mmol-1 decrease	Affymetrix [357789]	N
1444	chr12	112645400	112645401	rs2074356	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	12q24.13	C12orf51	rs2074356-A	0.23	2E-9		0.0064	[0.0042-0.0086] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	C12orf51	rs2074356-T	0.15	7E-37		0.035	[0.030-0.040] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	C12orf51	rs2074356-T	0.15	3E-126		0.0161	[0.015-0.017] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1444	chr12	112645400	112645401	rs2074356	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.13	C12orf51	rs2074356-T	0.13	2E-31		1.56	[1.45-1.68]	Affymetrix [666141]	N
1444	chr12	112645400	112645401	rs2074356	21270382	Baik I	2011-01-26	Am J Clin Nutr	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry male individuals	1,113 Korean ancestry male individuals	12q24.13	C12orf51, ALDH2	rs2074356-T	0.15	9E-59		1.06	[0.94-1.18] unit decrease	Affymetrix [315914]	N
1444	chr12	112645400	112645401	rs2074356	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	12q24.13	C12orf51	rs2074356-T	0.15	8E-12	(waist-hip ratio)	0.01	[0.004-0.008] decrease	Affymetrix [2156535] (imputed)	N
1444	chr12	112657360	112657361	rs112725417	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.13	NR	rs112725417-T	0.973035	4E-11		0.0166497	[0.011-0.022] unit increase	Affymetrix [16582909] (imputed)	N
1444	chr12	112657360	112657361	rs112725417	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.13	NR	rs112725417-T	0.973035	2E-14		0.0211124	[0.015-0.027] unit increase	Affymetrix [16582965] (imputed)	N
1444	chr12	112661262	112661263	rs7956202	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	NR	rs7956202-?	NR	5E-8		0.010022	[0.0064-0.0136] unit decrease	Affymetrix [805426] (imputed)	N
1444	chr12	112667674	112667675	rs1005902	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.13	C12orf51	rs1005902-G	0.358229711998206	2E-10		0.32379678	[0.22-0.42] unit decrease	Illumina [247039]	N
1444	chr12	112675132	112675133	rs11066207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q24.13	NR	rs11066207-C	0.096955	1E-20		0.031527	[0.025-0.038] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.13	TRAFD1	rs7953257-?	NR	2E-58	(conditional)	0.116	NR L decrease	Affymetrix [9390170] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.13	HECTD4	rs7953257-A	0.4	4E-20	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	HECTD4	rs7953257-A	0.44	4E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	HECTD4	rs7953257-A	0.4	3E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	HECTD4	rs7953257-A	0.44	1E-37	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.13	HECTD4	rs7953257-A	0.4	5E-39	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.13	HECTD4	rs7953257-A	0.45	8E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1444	chr12	112684220	112684221	rs7953257	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	12q24.13	NR	rs7953257-T		5E-6		0.1088	[0.062-0.156] SD units decrease	NR [10700000] (imputed)	N
1444	chr12	112699539	112699540	rs2285810	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	12q24.13	C12orf51	rs2285810-T	NR	8E-9				NR [2501749] (imputed)	N
1445	chr12	112736117	112736118	rs77768175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic pancreatitis	457 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	12q24.13		rs77768175-G	0.243020627	3E-9		0.5447608	[0.37-0.72] unit decrease	Illumina [13429808] (imputed)	N
1445	chr12	112736117	112736118	rs77768175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic pancreatitis	1,424 European ancestry cases, 476,104 European ancestry controls, 457 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	12q24.13		rs77768175-G	NR	3E-9		0.5448	[0.37-0.72] unit decrease	Affymetrix, Illumina [25843262] (imputed)	N
1445	chr12	112736117	112736118	rs77768175	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.13	HECTD4	rs77768175-G	0.3722	6E-16		0.77	[0.72-0.82]	Affymetrix [NR]	N
1445	chr12	112736117	112736118	rs77768175	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q24.13	HECTD4, ALDH2	rs77768175-A	0.807	1E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1445	chr12	112736117	112736118	rs77768175	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	HECTD4	rs77768175-G	0.157	5E-11		0.0329	[0.023-0.043] unit decrease	Affymetrix [at least 805769] (imputed)	N
1445	chr12	112756513	112756514	rs16942011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.13		rs16942011-A	0.92	2E-11				Affymetrix [10369434] (imputed)	N
1445	chr12	112756513	112756514	rs16942011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.13		rs16942011-A	0.92	8E-26				Affymetrix [10369434] (imputed)	N
1445	chr12	112766433	112766434	rs74649344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs74649344-C	NR	2E-12		0.0607	[0.044-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1445	chr12	112771062	112771063	rs10850031	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	HECTD4	rs10850031-?	NR	8E-10		0.011109	[0.0076-0.0147] unit decrease	Affymetrix [805426] (imputed)	N
1445	chr12	112777096	112777097	rs1468252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.13	HECTD4	rs1468252-A	0.081198	3E-33		0.051993553	[0.044-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1445	chr12	112777096	112777097	rs1468252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.13	NR	rs1468252-G	0.90387	4E-38				Affymetrix, Illumina [22063850] (imputed)	N
1445	chr12	112777096	112777097	rs1468252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.13	NR	rs1468252-G	0.915933	3E-38		0.046377	[0.039-0.053] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1445	chr12	112778225	112778225	rs77926279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.13	HECTD4	rs77926279-GGA	0.095313	1E-72		0.07232825	[0.064-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr12	112778225	112778225	rs77926279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.13	HECTD4	rs77926279-GGA	0.095316	2E-76		0.07417686	[0.066-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr12	112778225	112778225	rs77926279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.13	HECTD4	rs77926279-GGA	0.095286	1E-66		0.06882784	[0.061-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr12	112781843	112781844	rs4766898	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.13	HECTD4	rs4766898-T	0.6143	3E-11	(East Asian)	0.0454	[0.032-0.059] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1445	chr12	112786566	112786567	rs55843500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs55843500-A	0.95	4E-38				Affymetrix [10369434] (imputed)	N
1445	chr12	112809908	112809908	rs538069859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.13	HECTD4	rs538069859-CT	0.103089	7E-15		0.030443264	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr12	112813414	112813415	rs7959696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.13	HECTD4	rs7959696-C	NR	4E-10		0.0233076	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1445	chr12	112817520	112817521	rs10850034	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	12q24.13	NR	rs10850034-T		9E-6		0.1055	[0.059-0.152] SD units decrease	NR [10700000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Weight	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.13	HECTD4	rs11066280-T	0.158	8E-20	(male)	0.01	[0.008-0.012] unit decrease	NR [8056211] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.13	NR	rs11066280-A	NR	6E-6		1.283	NR	Affymetrix [352228] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.13	HECTD4	rs11066280-A	0.2	3E-14		0.78	[0.74-0.84]	Affymetrix [NR]	N
1445	chr12	112817782	112817783	rs11066280	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	HECTD4	rs11066280-A	0.1686	3E-9		0.1365	[0.091-0.182] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	12q24.13	HECTD4	rs11066280-T	0.1732	8E-7	(DBP)	0.8991	NR unit decrease	Affymetrix [305158]	N
1445	chr12	112817782	112817783	rs11066280	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Aspartate aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	C12orf51	rs11066280-?		2E-11				Affymetrix [at least 805769] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Alanine aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	C12orf51	rs11066280-?		1E-7				Affymetrix [at least 805769] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.13	HECTD4	rs11066280-A		7E-17		1.49		Illumina [31245]	N
1445	chr12	112817782	112817783	rs11066280	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	12q24.13	HECTD4	rs11066280-A	0.324	6E-11		8.78	[6.15-11.41] umol/L decrease	Illumina [~ 244000]	N
1445	chr12	112817782	112817783	rs11066280	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.13	HECTD4	rs11066280-A	0.21	6E-10	(Asian initial, BMI unadjusted)	0.065	[0.043-0.087] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	12q24.13	HECTD4	rs11066280-A	0.21	4E-9	(BMI unadjusted)	0.073	[0.048-0.098] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	26675016	Cha S	2015-12-16	PLoS One	A Genome-Wide Association Study Uncovers a Genetic Locus Associated with Thoracic-to-Hip Ratio in Koreans.	Thoracic-to-hip circumference ratio	2,388 Korean ancestry males, 2,600 Korean ancestry females	767 Korean ancestry males, 1,485 Korean ancestry females	12q24.13	HECTD4	rs11066280-?	0.17	6E-9	(males)	0.008624	[0.0057-0.0115] unit decrease	Affymetrix [310746]	N
1445	chr12	112817782	112817783	rs11066280	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	12q24.13	ALDH2	rs11066280-T	0.83	1E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	12q24.13	RPL6, PTPN11, ALDH2	rs11066280-A	0.2212	7E-9	(East Asians)	1.2415	[0.82-1.66] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q24.13	RPL6, PTPN11, ALDH2	rs11066280-A	0.2271	2E-11	(East Asians)	0.8922	[0.63-1.15] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	25705158	Shim U	2014-12-31	Genomics Inform	Pathway Analysis of Metabolic Syndrome Using a Genome-Wide Association Study of Korea Associated Resource (KARE) Cohorts.	Metabolic syndrome	3,253 Korean ancestry cases, 5,589 Korean ancestry controls	NA	12q24.13	C12orf51	rs11066280-?	NR	1E-7				Affymetrix [312121]	N
1445	chr12	112817782	112817783	rs11066280	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q24.13	ALDH2	rs11066280-T	0.81	1E-7		0.96	[0.63-1.29] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	12q24.13	ALDH2	rs11066280-T	0.81	6E-8				Affymetrix, Illumina [2485448] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q24.13	ALDH2	rs11066280-T	0.81	3E-10		0.62	[0.42-0.82] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	23364009	Yang X	2013-01-30	Am J Clin Nutr	Common variants at 12q24 are associated with drinking behavior in Han Chinese.	Drinking behavior	1,420 Han Chinese ancestry cases, 3,590 Han Chinese ancestry controls	4,896 Han Chinese ancestry cases, 13,293 Han Chinese ancestry controls	12q24.13	C12orf51, ALDH2, CCDC63, MYL2	rs11066280-T	0.84	3E-215		3.33	[3.23-3.45]	Affymetrix [~ 2200000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	12q24.13	C12orf51	rs11066280-A	0.17	2E-11		1.19	[1.13-1.25]	Affymetrix [~ 2200000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	C12orf51	rs11066280-A	0.17	8E-22	(ALT)	0.0045	[0.0035-0.0055] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	C12orf51	rs11066280-A	0.17	3E-63	(ALT)	0.0016	[0.0014-0.0018] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	12q24.13	RPL6	rs11066280-A	0.21	2E-15		1.3	[1.22-1.38]	Affymetrix [666141]	N
1445	chr12	112817782	112817783	rs11066280	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.13	RPL6, ALDH2, PTPN11	rs11066280-T	0.75	8E-31	(Systolic)	1.56	[1.31-1.81] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1445	chr12	112817782	112817783	rs11066280	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.13	RPL6, ALDH2, PTPN11	rs11066280-T	0.75	1E-35	(Diastolic)	1.01	[0.85-1.17] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1445	chr12	112825972	112825973	rs118153075	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q24.13		rs118153075-C	0.982	4E-10		0.27	[0.19-0.35] % increase	Affymetrix [NR] (imputed)	N
1445	chr12	112830578	112830579	rs7314031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.13	intergenic	rs7314031-G	0.0923	6E-52		0.09405662	[0.082-0.106] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr12	112830578	112830579	rs7314031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q24.13	intergenic	rs7314031-G	0.0924	1E-60		0.1018828	[0.09-0.114] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr12	112835333	112835334	rs10850036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.13	RPL6	rs10850036-C	NR	4E-8		0.0172241	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	12q24.13		rs11066283-?	0.353	9E-6		0.015	[0.0083-0.0217] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	12q24.13		rs11066283-?	0.5518	4E-13		0.0598	[0.044-0.076] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	12q24.13		rs11066283-?	0.353	6E-14		0.0513	[0.038-0.065] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	12q24.13		rs11066283-?	0.5518	7E-11		0.1592	[0.11-0.21] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	12q24.13		rs11066283-?	0.353	1E-10		0.1289	[0.09-0.168] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1445	chr12	112840765	112840766	rs11066283	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.13	NR	rs11066283-?	NR	2E-8		0.0488	[0.032-0.066] unit increase	Illumina [at least 560000] (imputed)	N
1445	chr12	112842274	112842275	rs11066284	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q24.13	RPL6	rs11066284-A	0.1713	4E-8		1.058	NR	Affymetrix [9154080] (imputed)	N
1445	chr12	112849898	112849899	rs7300285	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q24.13	NR	rs7300285-A	0.37	3E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
1445	chr12	112851281	112851282	rs11066289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	12q24.13		rs11066289-T	0.357052	9E-22		0.0457734	[0.036-0.055] unit increase	Illumina [13474352] (imputed)	N
1446	chr12	112864864	112864865	rs146628426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs146628426-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1446	chr12	112866200	112866201	rs11312766	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12q24.13	NR	rs11312766-CT	0.304	2E-7		0.9866	[0.61-1.36] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	12q24.13		rs11066301-G	0.57	3E-12		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	2E-27		0.0265	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	3E-24		0.0248	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	4E-35		0.0302	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	2E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	5E-16		0.0207	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	3E-13		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	7E-16		0.0206	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	2E-37		0.0326	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	1E-17		0.0208	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	2E-19		0.0229	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	8E-24		0.0251	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	3E-23		0.0262	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	5E-109		0.0541	[0.049-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	4E-11		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	6E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	4E-9		0.015	[0.0099-0.0201] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	NR	6E-15		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.13	NR	rs11066301-G	0.409586	2E-344				Affymetrix, Illumina [19872809] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	12q24.13	PTPN11	rs11066301-G	0.4109	3E-11		1.06	[1.04-1.08]	Affymetrix [at least 20323458] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	12q24.13	NR	rs11066301-?	NR	7E-6		3.031687	[1.71-4.35] unit increase	Illumina [30743395] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	12q24.13	PTPN11	rs11066301-G	0.426667	7E-15		0.06485496	[0.049-0.081] unit increase	Affymetrix [7288503] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	12q24.13	PTPN11	rs11066301-T	NR	4E-8		1.11	[1.07-1.15]	Illumina [6450125] (imputed)	N
1446	chr12	112871371	112871372	rs11066301	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.13	PTPN11	rs11066301-G	0.377847846405064	8E-16		0.4242176	[0.32-0.53] unit increase	Illumina [247039]	N
1446	chr12	112871371	112871372	rs11066301	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	12q24.13	PTPN11	rs11066301-G	NR	8E-12	(PLT)	4.65	[3.32-5.98] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1446	chr12	112871485	112871486	rs117162013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs117162013-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q24.13		rs11066309-A	NR	2E-8		0.0453	[0.03-0.061] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q24.13		rs11066309-A	NR	9E-15		0.0476	[0.036-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.13	NR	rs11066309-A	0.395452	7E-426				Affymetrix, Illumina [24588908] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q24.13	PTPN11	rs11066309-A	0.407665	2E-8		0.04528675	[0.03-0.061] unit increase	Affymetrix [7288503] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q24.13	PTPN11	rs11066309-A	0.409764	9E-15		0.047622617	[0.036-0.06] unit increase	Affymetrix [7288503] (imputed)	N
1446	chr12	112883475	112883476	rs11066309	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	12q24.13	NR	rs11066309-G	0.592058	1E-10		0.0146423	[0.01-0.019] unit decrease	Affymetrix [11535925] (imputed)	N
1446	chr12	112896840	112896840	rs58235019	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	12q24.13		rs58235019-A	0.404482	4E-10		0.0267936	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112896840	112896840	rs58235019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.13	PTPN11	rs58235019-A	NR	2E-9		0.0173569	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	2E-8		0.0229723	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	9E-9		0.023899	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	3E-8		0.0231352	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	3E-8		0.0231015	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426059	2E-10		0.0259494	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	9E-10		0.0256518	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	9E-9		0.0239466	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	2E-8		0.0236525	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426059	1E-8		0.0234881	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	1E-8		0.023711	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	1E-8		0.0239313	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	2E-8		0.0233618	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	6E-10		0.0254516	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	2E-9		0.0250189	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	5E-9		0.0243783	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	9E-9		0.0238636	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	5E-8		0.0228426	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	12q24.13		rs11066320-A	0.426081	4E-9		0.0244879	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.13	PTPN11	rs11066320-A	0.425356	2E-24		0.0196507	[0.016-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.13	PTPN11	rs11066320-A	0.42535	2E-10		0.012641	[0.0087-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q24.13	PTPN11	rs11066320-A	NR	3E-6		1.0458	NR	Affymetrix, Illumina [8278136] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	12q24.13	PTPN11	rs11066320-A	0.426876	5E-76		0.17050134	[0.15-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.13	PTPN11	rs11066320-A	0.4165	1E-11		0.2464	[0.18-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
1446	chr12	112906414	112906415	rs11066320	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	PTPN11	rs11066320-?	NR	2E-9		0.010513	[0.0071-0.0139] unit decrease	Affymetrix [805426] (imputed)	N
1446	chr12	112906873	112906873	rs143894582	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	12q24.13	ALDH2, PTPN11, NAA25, HECTD4, BRAP, TRAFD1, ACAD10, CUX2	rs143894582-C	0.9195	2E-14		1.7027	[1.27-2.14] unit decrease	Illumina [at least 4683137] (imputed)	N
1446	chr12	112910218	112910219	rs80279219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs80279219-A	NR	1E-10		0.0388	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112910218	112910219	rs80279219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.13	NR	rs80279219-A	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112918251	112918252	rs2107205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.13		rs2107205-G	0.90492	2E-8		0.0383544	[0.025-0.052] unit increase	NR [11722792] (imputed)	N
1446	chr12	112918251	112918252	rs2107205	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.13		rs2107205-G	0.90492	3E-8		0.0373552	[0.024-0.051] unit decrease	NR [11722792] (imputed)	N
1446	chr12	112923392	112923393	rs12229892	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	12q24.13	NR	rs12229892-G	0.52	2E-10		1.2048193	[NR]	Illumina [803202]	N
1446	chr12	112924705	112924706	rs41279092	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs41279092-A	NR	1E-13		0.0403	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112928450	112928451	rs7978851	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	PTPN11	rs7978851-?	NR	5E-8		0.010062	[0.0064-0.0137] unit decrease	Affymetrix [805426] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	12q24.13		rs11066325-C	0.250085	1E-15		0.041326	[0.031-0.051] unit decrease	Illumina [13476323] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	34054925	Cho HW	2021-05-13	Front Genet	A Genome-Wide Association Study of Novel Genetic Variants Associated With Anthropometric Traits in Koreans.	Waist-to-hip ratio adjusted for BMI	2,603 Korean ancestry males, 2,869 Korean ancestry females	19,571 Korean ancestry males, 37,321 Korean ancestry females	12q24.13	PTPN11	rs11066325-C	0.164	7E-13	(male)	0.004	[0.002-0.006] unit decrease	NR [8056211] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.13		rs11066325-T	NR	5E-16	(East Asian)			Affymetrix [NR] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	12q24.13		rs11066325-T	NR	5E-27	(East Asian)			Affymetrix [NR] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	32722627	Jin T	2020-07-26	Nutrients	Interactions of Habitual Coffee Consumption by Genetic Polymorphisms with the Risk of Prediabetes and Type 2 Diabetes Combined.	Coffee consumption	6,080 Korean ancestry cases, 1,788 Korean ancestry controls	NA	12q24.13	NR	rs11066325-C	NR	5E-6		1.293	NR	Affymetrix [352228] (imputed)	N
1446	chr12	112930474	112930475	rs11066325	31006500	Liu M	2019-04-04	Clin Nutr	Protein and fat intake interacts with the haplotype of PTPN11_rs11066325, RPH3A_rs886477, and OAS3_rs2072134 to modulate serum HDL concentrations in middle-aged people.	Low HDL-cholesterol levels	2,873 Korean ancestry cases, 5,966 Korean ancestry controls	NA	12q24.13	PTPN11, LOC728585, RPH3A	rs11066325-C	0.1637	3E-13		1.306	NR	Affymetrix [NR] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	5E-12		0.0274	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	3E-12		0.0278	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	1E-18		0.0349	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	3E-9		0.0242	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	1E-9		0.0264	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	1E-23		0.0396	[0.032-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112965141	112965142	rs2384000	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.13	NR	rs2384000-G	NR	8E-11		0.0258	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1446	chr12	112978203	112978204	rs7138688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	12q24.13		rs7138688-G	0.117377	1E-9		0.0432004	[0.029-0.057] unit increase	NR [11722792] (imputed)	N
1446	chr12	112979034	112979036	rs35675096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.13		rs35675096-A	0.090997	6E-11		0.050136335	[0.035-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1446	chr12	112979034	112979036	rs35675096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.13		rs35675096-A	0.0910220000000001	9E-55		0.062552884	[0.055-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1446	chr12	112979034	112979036	rs35675096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q24.13	intergenic	rs35675096-A	0.0895	3E-42		0.08720945	[0.075-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1446	chr12	112979034	112979036	rs35675096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q24.13	intergenic	rs35675096-A	0.0895	5E-48		0.09310965	[0.081-0.106] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1447	chr12	112994716	112994717	rs138778943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs138778943-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1447	chr12	112998852	112998853	rs233698	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	12q24.13		rs233698-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.13	PTPN11	rs7974266-?	NR	6E-19				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.13	PTPN11	rs7974266-?	NR	3E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.13	PTPN11	rs7974266-?	NR	3E-16				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.13	PTPN11	rs7974266-?		2E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.13	PTPN11	rs7974266-?	NR	4E-20				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.13	PTPN11	rs7974266-?	NR	4E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.13	PTPN11	rs7974266-?	NR	2E-17				Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113007601	113007602	rs7974266	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.13	PTPN11	rs7974266-?	NR	2E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1447	chr12	113018478	113018479	rs4766971	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	12q24.13	PTPN11	rs4766971-A	0.0892	5E-8		0.0102	[0.0059-0.0145] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1447	chr12	113031542	113031543	rs233721	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	12q24.13	NR	rs233721-T	0.43	7E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
1447	chr12	113031542	113031543	rs233721	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q24.13	RPH3A	rs233721-T	0.358627	2E-18		0.0191538	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1447	chr12	113031542	113031543	rs233721	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q24.13	RPH3A	rs233721-T	0.358622	1E-13		0.0162457	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1447	chr12	113031542	113031543	rs233721	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	12q24.13	NR	rs233721-?	NR	3E-6		0.0399	[0.023-0.057] unit increase	Illumina [at least 560000] (imputed)	N
1447	chr12	113039942	113039943	rs233716	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	12q24.13	RPH3A	rs233716-?	NR	8E-15	(conditional)	0.0555	NR L increase	Affymetrix [9390170] (imputed)	N
1447	chr12	113039942	113039943	rs233716	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.13	RPH3A	rs233716-?	NR	5E-13		0.019	[0.014-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1447	chr12	113051061	113051062	rs35786178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.13	NR	rs35786178-A	NR	2E-10		0.0312	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr12	113070263	113070264	rs78691875	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs78691875-A	NR	2E-10		0.0536	[0.037-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1447	chr12	113082830	113082831	rs232918	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.13	NR	rs232918-?	NR	9E-7		0.0087532	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1447	chr12	113100993	113100994	rs17824620	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	12q24.13	RPH3A, PTPN11	rs17824620-C	NR	1E-8		2.457	[1.62-3.3] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1448	chr12	113117896	113117897	rs77753011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.13		rs77753011-T	NR	3E-13		0.0264	[0.019-0.033] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1448	chr12	113117896	113117897	rs77753011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q24.13		rs77753011-T	0.232046	3E-13		0.0263667	[0.019-0.033] unit decrease	Illumina [13479924] (imputed)	N
1448	chr12	113117896	113117897	rs77753011	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	RPH3A	rs77753011-T	0.1621	4E-8		0.1304	[0.084-0.177] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1448	chr12	113132418	113132419	rs111788255	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.13		rs111788255-A	0.821	1E-30				Affymetrix [10369434] (imputed)	N
1448	chr12	113132440	113132441	rs7964004	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	12q24.13	NR	rs7964004-?	NR	3E-6				Illumina [7500450] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	3E-8		0.0243774	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	9E-9		0.0260451	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	7E-10		0.0275214	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	1E-9		0.027254	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12q24.13		rs2384049-A	0.282617	8E-10		0.0266197	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	12q24.13		rs2384049-A	0.282617	1E-9		0.0275047	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	1E-8		0.0255795	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113135530	113135531	rs2384049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	12q24.13		rs2384049-A	0.2826	1E-8		0.0254079	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1448	chr12	113137571	113137572	rs2891403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.13		rs2891403-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1448	chr12	113158837	113158838	rs7312122	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	12q24.13	intergenic	rs7312122-G	0.16	9E-6			[NR]	Affymetrix [398699]	N
1448	chr12	113163765	113163766	rs11066390	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.13	RPH3A	rs11066390-A	0.2684	3E-11		0.025	[0.018-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1448	chr12	113163765	113163766	rs11066390	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.13	RPH3A	rs11066390-A	0.1492	8E-6	(East Asian)	0.0393	[0.022-0.057] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1448	chr12	113163765	113163766	rs11066390	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q24.13	RPH3A	rs11066390-A	0.305	9E-7		0.021153	[0.013-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1448	chr12	113163765	113163766	rs11066390	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.13	NR	rs11066390-A	0.7432	2E-9	(men)	0.037	[0.025-0.049] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1448	chr12	113165247	113165259	rs143031012	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	12q24.13	NR	rs143031012-?		7E-6		0.61	[0.49-0.75]	Illumina [539473] (imputed)	N
1448	chr12	113173493	113173494	rs3803064	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.13	intergenic	rs3803064-T	0.392137074296958	6E-6		0.21217324	[0.12-0.3] unit decrease	Illumina [247039]	N
1448	chr12	113173493	113173494	rs3803064	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	12q24.13	AC007425.1	rs3803064-?	NR	7E-6				Illumina [874956]	N
1448	chr12	113200292	113200293	rs2189271	33093602	Chen IC	2020-10-22	Sci Rep	CUX2, BRAP and ALDH2 are associated with metabolic traits in people with excessive alcohol consumption.	Excessive alcohol consumption	1,945 Taiwanese cases, 16,418 Taiwanese controls	NA	12q24.13	NR	rs2189271-?	NR	5E-8				Affymetrix [6410722] (imputed)	N
1448	chr12	113204684	113204685	rs2384034	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	12q24.13	RPH3A	rs2384034-?	NR	4E-9				NR [1800000]	N
1448	chr12	113205502	113205503	rs7294822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q24.13		rs7294822-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1448	chr12	113235278	113235279	rs7132088	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	12q24.13		rs7132088-C	0.559	2E-21				Affymetrix [10369434] (imputed)	N
1448	chr12	113235278	113235279	rs7132088	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	12q24.13		rs7132088-C	0.559	1E-25				Affymetrix [10369434] (imputed)	N
1448	chr12	113237133	113237134	rs4766655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs4766655-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1449	chr12	113263517	113263518	rs7139170	33913524	Suzuki T	2021-04-29	Epilepsia	Genome-wide association study of epilepsy in a Japanese population identified an associated region at chromosome 12q24.	Epilepsy	1,823 Japanese ancestry cases, 7,970 Japanese ancestry controls	NR	12q24.13	RPH3A	rs7139170-?		1E-8		1.24	[1.15-1.34]	Illumina [9899436] (imputed)	N
1449	chr12	113263517	113263518	rs7139170	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q24.13	RPH3A	rs7139170-A	0.67	7E-9		1.06	[1.01-1.11]	Illumina [5167567] (imputed)	N
1449	chr12	113263568	113263569	rs7297436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.13	NR	rs7297436-G	NR	1E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1449	chr12	113265247	113265248	rs7970581	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	12q24.13	NR	rs7970581-G		9E-7		0.138	[0.083-0.193] SD units decrease	NR [10700000] (imputed)	N
1449	chr12	113277969	113277970	rs7315593	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	12q24.13	RPH3A	rs7315593-?	NR	8E-9		0.03017	[0.02-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1449	chr12	113300768	113300769	rs3948714	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	12q24.13	RPH3A	rs3948714-?	NR	3E-9		0.02479	[0.017-0.033] unit decrease	Illumina [6108953] (imputed)	N
1449	chr12	113319307	113319308	rs886477	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	12q24.13	RPH3A	rs886477-A	0.1805	4E-8		0.1217	[0.078-0.165] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
1449	chr12	113319307	113319308	rs886477	31006500	Liu M	2019-04-04	Clin Nutr	Protein and fat intake interacts with the haplotype of PTPN11_rs11066325, RPH3A_rs886477, and OAS3_rs2072134 to modulate serum HDL concentrations in middle-aged people.	Low HDL-cholesterol levels	2,873 Korean ancestry cases, 5,966 Korean ancestry controls	NA	12q24.13	RPH3A, PTPN11, OAS1	rs886477-A	0.1969	2E-7		1.284	NR	Affymetrix [NR] (imputed)	N
1449	chr12	113319307	113319308	rs886477	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	12q24.13	NR	rs886477-A	0.2804	1E-8	(East Asian)	0.3031	[0.2-0.41] unit decrease	Illumina [6200000] (imputed)	N
1449	chr12	113357192	113357193	rs10774671	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	12q24.13		rs10774671-A	0.6692	2E-11		1.0588357	[1.041370910202522-1.0765935887102847]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1449	chr12	113357192	113357193	rs10774671	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	12q24.13		rs10774671-A	0.6642	6E-10		1.1067967	[1.071785554292693-1.1429515551857836]	Affymetrix, Illumina [NR] (imputed)	N
1449	chr12	113357192	113357193	rs10774671	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	12q24.13		rs10774671-A	0.6518	4E-13		1.1998901	[1.1422351034880305-1.2604553442434507]	Illumina [NR] (imputed)	N
1449	chr12	113357208	113357209	rs1131476	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.13	NR	rs1131476-A	0.756	1E-9		1.11	[1.08-1.14]	Illumina [11270530] (imputed)	N
1449	chr12	113359156	113359157	rs4767027	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.13	OAS1	rs4767027-C	0.654	6E-26	(2'-5'-oligoadenylate synthase 1, OAS1.10361.25.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1449	chr12	113361573	113361574	rs11066452	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.13	OAS1	rs11066452-T	0.7021875	6E-8	(OAS1, 10361_25_3)	0.146917	[0.094-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
1449	chr12	113363549	113363550	rs6489867	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	12q24.13		rs6489867-T	NR	1E-9		1.2	[1.14-1.25]	Illumina [NR] (imputed)	N
1449	chr12	113365620	113365621	rs11066453	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.13	NR	rs11066453-G	0.26	7E-11		0.79	[0.74-0.85]	Affymetrix [NR]	N
1449	chr12	113365620	113365621	rs11066453	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.13	OAS1	rs11066453-A	0.7826	5E-19	(East Asian)	0.0752	[0.059-0.092] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1449	chr12	113365620	113365621	rs11066453	23575436	Go MJ	2013-04-11	J Hum Genet	New susceptibility loci in MYL2, C12orf51 and OAS1 associated with 1-h plasma glucose as predisposing risk factors for type 2 diabetes in the Korean population.	Glycemic traits	7,696 Korean ancestry individuals	6,536 Korean ancestry individuals	12q24.13	OAS1	rs11066453-G		5E-9	(1-hPG)	0.242	[0.16-0.32] mmol-1 decrease	Affymetrix [357789]	N
1449	chr12	113365620	113365621	rs11066453	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	intergenic	rs11066453-G	0.13	6E-44		0.0097	[0.0083-0.0111] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1450	chr12	113381375	113381376	rs6489882	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	12q24.13	OAS3	rs6489882-G	NR	5E-8		1.16	[1.1-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
1450	chr12	113409175	113409176	rs2072134	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	12q24.13	OAS3	rs2072134-A	0.26	1E-10		0.78	[0.73-0.84]	Affymetrix [NR]	N
1450	chr12	113409175	113409176	rs2072134	31089239	Choe EK	2019-05-14	Sci Rep	Genome-wide association study of right-sided colonic diverticulosis in a Korean population.	Right-sided colonic diverticulosis	893 Korean ancestry cases, 1,075 Korean ancestry controls	346 Korean ancestry cases, 305 Korean ancestry controls	12q24.13	OAS1, OAS3	rs2072134-G	0.860	7E-6		1.48	[1.25-1.75]	Affymetrix [up to 755820]	N
1450	chr12	113409175	113409176	rs2072134	31006500	Liu M	2019-04-04	Clin Nutr	Protein and fat intake interacts with the haplotype of PTPN11_rs11066325, RPH3A_rs886477, and OAS3_rs2072134 to modulate serum HDL concentrations in middle-aged people.	Low HDL-cholesterol levels	2,873 Korean ancestry cases, 5,966 Korean ancestry controls	NA	12q24.13	OAS3, OAS1, OAS2	rs2072134-A	0.115	6E-12		1.359	NR	Affymetrix [NR] (imputed)	N
1450	chr12	113409175	113409176	rs2072134	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	12q24.13	OAS3	rs2072134-?		1E-6				Affymetrix [at least 805769] (imputed)	N
1450	chr12	113409175	113409176	rs2072134	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	12q24.13	OAS3	rs2072134-T		5E-7		1.33		Illumina [31245]	N
1450	chr12	113409175	113409176	rs2072134	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinkers vs non-drinkers)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	12q24.13	OAS3	rs2072134-A	0.16	3E-16	(East Asian)	1.58		Affymetrix [NR] (imputed)	N
1450	chr12	113409175	113409176	rs2072134	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.13	OAS3	rs2072134-A	0.11	6E-6		0.0204	[0.012-0.029] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1450	chr12	113409175	113409176	rs2072134	21270382	Baik I	2011-01-26	Am J Clin Nutr	Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men.	Alcohol consumption	1,721 Korean ancestry male individuals	1,113 Korean ancestry male individuals	12q24.13	OAS3	rs2072134-A	0.11	6E-17		0.61	[0.49-0.73] unit decrease	Affymetrix [315914]	N
1450	chr12	113425153	113425154	rs1293767	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	12q24.13	OAS2	rs1293767-?	NR	9E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1450	chr12	113425153	113425154	rs1293767	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	12q24.13	OAS2	rs1293767-?	NR	2E-6		0.225	[0.13-0.32] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1450	chr12	113443221	113443222	rs2013593	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.13	OAS2	rs2013593-?		5E-6				Illumina [4322238] (imputed)	N
1450	chr12	113450199	113450200	rs1297597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.13		rs1297597-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1450	chr12	113491783	113491784	rs7956193	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.13	DTX1, OAS2, RASAL1	rs7956193-T	0.29	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1451	chr12	113512944	113512945	rs10850127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.13	DTX1	rs10850127-T	NR	5E-9		0.0176248	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1451	chr12	113512944	113512945	rs10850127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.13	DTX1	rs10850127-T	NR	1E-9		0.0182846	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1451	chr12	113512944	113512945	rs10850127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.13		rs10850127-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1451	chr12	113573236	113573237	rs7960087	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RASAL1	rs7960087-?	NR	4E-8		0.932144	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1451	chr12	113580699	113580700	rs117725394	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.13	NR	rs117725394-A	0.01394	6E-20	(DDB1)	0.3432	NR unit increase	Illumina [1671387] (imputed)	N
1451	chr12	113603689	113603690	rs146087049	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	12q24.13		rs146087049-?	NR	4E-6		16.6192	[15.43-17.81]	NR [663102]	N
1451	chr12	113607501	113607502	rs2384207	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	12q24.13	DDX54, TPCN1, SLC24A6, OAS1, OAS2, OAS3	rs2384207-?	NR	5E-8	(Response)	0.06	[0.040-0.080] ng/dL increase	Affymetrix [2543887] (imputed)	N
1452	chr12	113687858	113687859	rs729062	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q24.13	RPH3A, OAS1, OAS2, OAS3, DTX1, RASAL1, CCDC42B, DDX54, C12orf52, IQCD, SLC24A6, PLBD2, SDS, SDSL, LHX5	rs729062-A	0.919700006608392	9E-9		0.03779316	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1453	chr12	113799290	113799291	rs117054079	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute xerostomia)	869 Dutch ancestry individuals	246 Dutch ancestry individuals	12q24.13		rs117054079-T	NR	2E-6		0.33352944	[0.19-0.47] decrease	Illumina [6334277] (imputed)	N
1453	chr12	113813968	113813969	rs574157881	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		12q24.13	intergenic	rs574157881-A	0.108414	5E-6		0.889369	[0.51-1.26] unit decrease	Illumina [640625] (imputed)	N
1453	chr12	113847541	113847542	rs1559997	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	12q24.13	SDS	rs1559997-A	NR	8E-6		1.17	[0.90-1.52]	Affymetrix [~ 8000000] (imputed)	N
1454	chr12	113911531	113911532	rs3809169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.13	Intergenic	rs3809169-T	0.9128	1E-9	(MTAG)	0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr12	113911531	113911532	rs3809169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.13		rs3809169-T	0.9128	4E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1454	chr12	113911531	113911532	rs3809169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.13	Intergenic	rs3809169-T	0.9128	3E-9	(MTAG)	0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr12	113917284	113917285	rs12814443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.13	Intergenic	rs12814443-A	0.0875	7E-9	(MTAG)	0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr12	113920854	113920855	rs7955635	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.13	Intergenic	rs7955635-T	0.0888	4E-8	(MTAG)	0.0222	[0.014-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1454	chr12	113936995	113936996	rs76270203	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q24.13	NR	rs76270203-?	NR	9E-7				Affymetrix [5486770] (imputed)	N
1454	chr12	113972652	113972653	rs12830035	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	12q24.13	intergenic	rs12830035-C	0.86755463	8E-6		0.045812342	[0.026-0.066] unit decrease	Illumina [1632371] (imputed)	N
1454	chr12	113979655	113979656	rs11066587	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12q24.13	intergenic	rs11066587-G	0.16	5E-6	(CRP)	0.26	[NR] mg/L increase	Affymetrix [408775]	N
1454	chr12	113988955	113988956	rs12426768	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	12q24.13	NR	rs12426768-?	NR	4E-9	(Dipeptidyl peptidase 1)			Illumina [514227]	N
1454	chr12	113990209	113990210	rs11066600	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:2 levels	1,937 individuals	NA	12q24.13	intergenic	rs11066600-G	0.407	4E-7		0.1675	[0.1-0.23] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1454	chr12	114004605	114004606	rs73201031	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	12q24.13		rs73201031-T	NR	2E-6		1.7883	unit increase	Illumina [NR] (imputed)	N
1455	chr12	114065411	114065412	rs10850185	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.13	NA	rs10850185-A	0.2989	5E-10		0.0116	[0.0079-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1455	chr12	114065411	114065412	rs10850185	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q24.13	NA	rs10850185-A	0.2989	5E-10		0.0116	[0.0079-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1455	chr12	114066308	114066309	rs16942944	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.13	NR	rs16942944-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1455	chr12	114066308	114066309	rs16942944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.13		rs16942944-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1455	chr12	114085797	114085798	rs7952757	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.13	LHX5	rs7952757-?	NR	9E-6	(UDP glucose; UDP galactose)	0.18096066	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1455	chr12	114110960	114110961	rs525444	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.13	RBM19	rs525444-T	0.79	1E-8		0.015147359	[0.0099-0.0204] unit increase	Affymetrix [11514654] (imputed)	N
1455	chr12	114117759	114117760	rs615756	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	12q24.13		rs615756-?	NR	6E-6		1.0417235	[1.02339692474331-1.06037830139729]	Illumina [up to 7827597] (imputed)	N
1455	chr12	114123401	114123402	rs11066679	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	12q24.13	RBM19, LHX5	rs11066679-C	0.23	3E-6		0.08	[0.041-0.119] unit decrease	Illumina [~ 8300000] (imputed)	N
1455	chr12	114123721	114123722	rs7307263	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q24.13	RBM19	rs7307263-G	0.427	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1455	chr12	114129718	114129719	rs7136086	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	12q24.13		rs7136086-C	NR	1E-11		0.024826746	[0.018-0.032] years increase	NR [7400000] (imputed)	N
1455	chr12	114132309	114132310	rs61932784	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	12q24.13	NR	rs61932784-C	0.783141	4E-9		0.022236	[0.015-0.03] unit increase	Affymetrix [16577424] (imputed)	N
1455	chr12	114134156	114134157	rs41334252	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	12q24.13	LINC01234	rs41334252-C	0.768	9E-7		0.023	[0.013-0.033] unit increase	Affymetrix [~ 10446505] (imputed)	N
1455	chr12	114162998	114162999	rs55706311	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12q24.13	RBM19, LHX5	rs55706311-?	NR	1E-8	(male)	4.9	[2.38-9.94]	Illumina [NR] (imputed)	N
1455	chr12	114162998	114162999	rs55706311	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	12q24.13	NR	rs55706311-?	NR	6E-7				Illumina [NR] (imputed)	N
1456	chr12	114189960	114189961	rs4767120	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	12q24.13	AK096932, BC007399	rs4767120-?	NR	3E-8		0.024	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1456	chr12	114194275	114194276	rs35785195	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q24.13	RP11-438N16.1, RBM19	rs35785195-G	NR	2E-6	(daytime napping)	0.6981	[0.41-0.99] unit increase	Affymetrix [7141204] (imputed)	N
1456	chr12	114206075	114206076	rs741627	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	12q24.13	LHX5, RBM19	rs741627-G	0.15	1E-6		0.1012	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1456	chr12	114215682	114215682	rs201726382	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	12q24.13	NR	rs201726382-GA	NR	9E-6		0.1959	[0.11-0.28] SD units decrease	NR [10700000] (imputed)	N
1456	chr12	114215701	114215702	rs79847576	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.13	NR	rs79847576-G	0.02091	2E-10	(SERPINH1)	0.02255	NR unit increase	Illumina [1671387] (imputed)	N
1456	chr12	114248190	114248191	rs12816806	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	12q24.13	intergenic	rs12816806-?	NR	9E-6		0.8384	unit increase	Illumina [2543888] (imputed)	N
1456	chr12	114261236	114261237	rs2059598	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	12q24.13	RBM19	rs2059598-C	0.31	5E-7	(African American)	0.08	[0.041-0.119] unit increase	Illumina [up to 13042663] (imputed)	N
1456	chr12	114284142	114284143	rs879901	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.13		rs879901-C	0.374	2E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1457	chr12	114297641	114297642	rs7965253	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	12q24.13	RBM19	rs7965253-T	0.349	1E-10		0.008	[0.0056-0.0104] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1457	chr12	114299547	114299548	rs77531286	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q24.13		rs77531286-T	0.8517	1E-8		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1457	chr12	114343817	114343818	rs3955311	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q24.21	RBM19	rs3955311-T	0.1491	3E-8		1.026341		Affymetrix [11880941] (imputed)	N
1457	chr12	114359264	114359265	rs3782455	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	12q24.21	RBM19	rs3782455-?		6E-6				Illumina [859311]	N
1457	chr12	114378343	114378344	rs143838781	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q24.21	RBM19	rs143838781-?	NR	4E-7	(AA)	0.061	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1457	chr12	114415704	114415705	rs11066858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.21		rs11066858-A	NR	1E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1457	chr12	114416448	114416449	rs34934053	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	12q24.21	NR	rs34934053-?	NR	8E-7		1.15297	[0.7-1.61] unit increase	NR [13958389] (imputed)	N
1457	chr12	114417103	114417104	rs11066860	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		12q24.21	intergenic	rs11066860-A	0.109	6E-6		0.579	[0.33-0.83] unit increase	Illumina [640625] (imputed)	N
1457	chr12	114420269	114420270	rs11066861	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Body mass index	up to 33,431 European ancestry individuals	NA	12q24.21	RBM19	rs11066861-A	0.057	3E-6		1.274	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1458	chr12	114446455	114446456	rs76406609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.21		rs76406609-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1458	chr12	114505955	114505956	rs141066394	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs141066394-G	0.989849	4E-8	(100 ms)	0.158044	[0.1-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr12	114505955	114505956	rs141066394	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs141066394-G	0.989849	3E-8	(82 ms)	0.16312	[0.11-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
1458	chr12	114534671	114534672	rs61930810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.21		rs61930810-C	NR	3E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1458	chr12	114534671	114534672	rs61930810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.21	NR	rs61930810-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1458	chr12	114534671	114534672	rs61930810	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.21	NA	rs61930810-T	0.9329	3E-10		0.0241	[0.017-0.032] unit increase	NR [~ 27400000] (imputed)	N
1458	chr12	114545273	114545274	rs76859191	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	12q24.21	RP11-100F15.2, GLULP5, HAUS8P1, RBM19	rs76859191-A	NR	5E-7	(daytime resting)	1.65	[1.01-2.29] unit decrease	Affymetrix [7141204] (imputed)	N
1458	chr12	114549193	114549194	rs1075177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q24.21		rs1075177-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	9E-9	(116 ms)	0.0355247	[0.023-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	9E-11	(54 ms)	0.0403061	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	7E-9	(94 ms)	0.036037	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	7E-11	(152 ms)	0.0394233	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	7E-10	(92 ms)	0.0374725	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	7E-10	(80 ms)	0.0371113	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	6E-9	(70 ms)	0.0360714	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	6E-9	(166 ms)	0.0355513	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	6E-12	(52 ms)	0.042773	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	5E-9	(88 ms)	0.0349824	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	5E-8	(180 ms)	0.0333112	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	5E-8	(100 ms)	0.0331122	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	5E-11	(58 ms)	0.0408414	[0.029-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	5E-10	(78 ms)	0.0389568	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	4E-8	(82 ms)	0.0330909	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	4E-8	(178 ms)	0.0327902	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	4E-10	(154 ms)	0.038427	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	3E-9	(122 ms)	0.0369305	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	3E-8	(176 ms)	0.033678	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	3E-8	(124 ms)	0.033819	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-8	(164 ms)	0.0349032	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-8	(162 ms)	0.0341179	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-10	(56 ms)	0.0398155	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-10	(172 ms)	0.0382812	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-10	(170 ms)	0.0380631	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	2E-10	(114 ms)	0.0390275	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-9	(168 ms)	0.0367116	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-9	(156 ms)	0.0373594	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-9	(144 ms)	0.0381922	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-9	(142 ms)	0.036531	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-8	(96 ms)	0.0351778	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-8	(86 ms)	0.0337021	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-8	(72 ms)	0.0354707	[0.023-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-8	(130 ms)	0.0343855	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-11	(50 ms)	0.0420733	[0.03-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-10	(76 ms)	0.0398335	[0.028-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-10	(68 ms)	0.0392645	[0.027-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114581322	114581323	rs722726	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	RBM19	rs722726-C	0.717321	1E-10	(66 ms)	0.0393418	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1459	chr12	114585579	114585580	rs10492336	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	12q24.21	TBX5	rs10492336-?	0.82	4E-14		1.41	[1.30-1.54]	Affymetrix [662108]	N
1459	chr12	114602859	114602860	rs11066971	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.21	TBX5	rs11066971-T	0.1454	6E-9		0.016561227	[0.011-0.022] unit decrease	Affymetrix [11514654] (imputed)	N
1459	chr12	114610510	114610511	rs759928	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q24.21	NR	rs759928-?	NR	9E-9				Illumina [7760689] (imputed)	N
1459	chr12	114637422	114637423	rs7294372	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.21	TBX5	rs7294372-T	0.93	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1459	chr12	114637847	114637848	rs4767234	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	12q24.21	TBX5	rs4767234-A	0.59	6E-7	(Smoker)	1.17	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1459	chr12	114644940	114644941	rs78402106	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	12q24.21	TBX5, RBM19	rs78402106-C	0.017	5E-7		0.15	[0.091-0.209] unit decrease	Illumina [10000000] (imputed)	N
1459	chr12	114657881	114657882	rs1465549	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.21	RBM19	rs1465549-?	NR	8E-6	(adipic acid)	0.1780638	[0.1-0.256] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1459	chr12	114666201	114666202	rs10774740	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	12q24.21	TBX5	rs10774740-G	0.6	3E-10		1.14	[1.09-1.18]	Illumina [1531807] (imputed)	N
1459	chr12	114668617	114668618	rs2555019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.21		rs2555019-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1459	chr12	114668617	114668618	rs2555019	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	12q24.21		rs2555019-C	0.544	3E-12		1.0869565	[1.06-1.11]	Affymetrix, Illumina [42907111] (imputed)	N
1459	chr12	114668617	114668618	rs2555019	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	12q24.21	TBX5	rs2555019-C	0.456	1E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [42907111] (imputed)	N
1459	chr12	114669869	114669870	rs2701110	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	12q24.21	TBX5	rs2701110-A	0.1664	9E-13		0.024	[0.017-0.031] unit increase	Affymetrix [19819130] (imputed)	N
1459	chr12	114669869	114669870	rs2701110	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX5	rs2701110-A	0.1664	2E-8		0.0179	[0.012-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1459	chr12	114669869	114669870	rs2701110	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX5	rs2701110-A	0.1664	5E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1459	chr12	114669869	114669870	rs2701110	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX5	rs2701110-A	0.1664	2E-16		0.0259	[0.02-0.032] unit increase	Affymetrix [19819130] (imputed)	N
1459	chr12	114673420	114673421	rs1247943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	12q24.21		rs1247943-A	NR	4E-11		0.0978	[0.069-0.127] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
1459	chr12	114673420	114673421	rs1247943	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	12q24.21	TBX5	rs1247943-G	0.4603	2E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [37144863] (imputed)	N
1459	chr12	114673722	114673723	rs1247942	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	12q24.21	NR	rs1247942-G	0.59	1E-10		0.099	unit increase	NR [2324712] (imputed)	N
1459	chr12	114673722	114673723	rs1247942	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	12q24.21	LOC105369996, TBX5	rs1247942-G		2E-9		1.12	[1.09-1.16]	Illumina [11951684] (imputed)	N
1459	chr12	114685570	114685571	rs1270884	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q24.21	NR	rs1270884-A	NR	6E-25		1.072	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1459	chr12	114685570	114685571	rs1270884	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q24.21	NR	rs1270884-A	0.48	1E-18		1.07	[1.06-1.09]	Illumina [20370935] (imputed)	N
1459	chr12	114685570	114685571	rs1270884	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	12q24.21	TBX5, LOC255480	rs1270884-A	0.49	7E-11		1.07	[1.04-1.10]	Illumina [~ 2600000] (imputed)	N
1459	chr12	114686644	114686645	rs2555004	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	12q24.21	intergenic	rs2555004-?	0.48850000000000005	5E-10		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1460	chr12	114705585	114705586	rs1920592	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	12q24.21	intergenic	rs1920592-?	NR	1E-6	(Mood symptoms)	0.1125	[NR] unit decrease	Affymetrix [696491]	N
1460	chr12	114714265	114714266	rs10744816	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.21	TBX5	rs10744816-G	0.234	6E-7	(Amylin )	0.04	[NR] pM increase	Illumina [899892]	N
1460	chr12	114718392	114718393	rs7314353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.21	RP11-139B1.1	rs7314353-G	NR	2E-8		0.0165659	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
1460	chr12	114720537	114720538	rs75582158	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.21	NR	rs75582158-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1460	chr12	114749690	114749691	rs7968251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.21		rs7968251-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1460	chr12	114764761	114764762	rs6489953	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	12q24.21	TBX5	rs6489953-C	0.17	2E-16		1.2	[0.91-1.49] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1460	chr12	114786217	114786218	rs12322049	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	12q24.21	RBM19, TBX5	rs12322049-A	0.07	2E-6		0.406	[0.24-0.57] unit increase	Illumina [6379332] (imputed)	N
1460	chr12	114789225	114789226	rs2384407	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	12q24.21	TBX5	rs2384407-A	NR	4E-17		1.19	[1.14-1.24]	NR [2286360] (imputed)	N
1460	chr12	114789225	114789226	rs2384407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs2384407-A	0.66463	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
1460	chr12	114789225	114789226	rs2384407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs2384407-A	0.666689	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
1460	chr12	114793239	114793240	rs883079	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	12q24.21	TBX5	rs883079-C	0.28	2E-10		1.25	[1.16 - 1.33]	Affymetrix, Illumina [6990521] (imputed)	N
1460	chr12	114793239	114793240	rs883079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q24.21		rs883079-T	NR	8E-29		0.1137	[0.094-0.134] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	9E-37	(62 ms)	0.0785635	[0.066-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	9E-18	(-48 ms)	0.053748	[0.041-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-48	(44 ms)	0.0892374	[0.077-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-42	(58 ms)	0.0838501	[0.072-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-30	(76 ms)	0.0696834	[0.058-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-26	(90 ms)	0.0639451	[0.052-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-19	(138 ms)	0.0527777	[0.041-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-14	(142 ms)	0.0447963	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	8E-12	(158 ms)	0.0408415	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	7E-47	(42 ms)	0.0885942	[0.076-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	7E-40	(54 ms)	0.0819086	[0.07-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	7E-26	(102 ms)	0.063455	[0.051-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	7E-20	(-188 ms)	0.0561426	[0.044-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	7E-18	(136 ms)	0.0520672	[0.04-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-47	(46 ms)	0.089113	[0.077-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-36	(64 ms)	0.0775468	[0.065-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-32	(68 ms)	0.0717763	[0.06-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-21	(108 ms)	0.0566435	[0.045-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-16	(146 ms)	0.0481147	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	6E-15	(-60 ms)	0.048927	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-44	(40 ms)	0.0858702	[0.074-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-42	(38 ms)	0.0837818	[0.072-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-27	(96 ms)	0.0661762	[0.054-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-25	(92 ms)	0.0624198	[0.05-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-16	(116 ms)	0.0486501	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-16	(114 ms)	0.049004	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	5E-16	(-58 ms)	0.0507207	[0.038-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-29	(82 ms)	0.0686423	[0.057-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-27	(94 ms)	0.0656439	[0.054-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-22	(106 ms)	0.0586243	[0.047-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-17	(26 ms)	0.0530616	[0.041-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-15	(148 ms)	0.0466264	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-15	(-56 ms)	0.0491703	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-14	(-40 ms)	0.0472344	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-13	(164 ms)	0.0439387	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	4E-12	(168 ms)	0.0416617	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-48	(48 ms)	0.0904227	[0.078-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-47	(50 ms)	0.0894393	[0.077-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-31	(74 ms)	0.0709024	[0.059-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-30	(70 ms)	0.0707256	[0.059-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-29	(80 ms)	0.0686608	[0.057-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-27	(78 ms)	0.0670132	[0.055-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-23	(98 ms)	0.0612924	[0.049-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-23	(100 ms)	0.0604307	[0.048-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-21	(110 ms)	0.0568689	[0.045-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-21	(-186 ms)	0.0584545	[0.046-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-20	(126 ms)	0.0555206	[0.044-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-20	(120 ms)	0.0557494	[0.044-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-19	(122 ms)	0.0542045	[0.042-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-19	(118 ms)	0.0542814	[0.042-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-17	(-150 ms)	0.0527053	[0.04-0.065] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-16	(134 ms)	0.0493709	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-16	(-46 ms)	0.0512864	[0.039-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	3E-11	(170 ms)	0.0401995	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-41	(56 ms)	0.0834015	[0.071-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-39	(60 ms)	0.0808468	[0.069-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-29	(32 ms)	0.070246	[0.058-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-28	(84 ms)	0.0677312	[0.056-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-26	(-166 ms)	0.0662132	[0.054-0.078] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-25	(-180 ms)	0.0648899	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-25	(-174 ms)	0.0645971	[0.052-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-23	(-184 ms)	0.0617285	[0.05-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-21	(28 ms)	0.0593245	[0.047-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-20	(124 ms)	0.0555166	[0.044-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-19	(-190 ms)	0.0556688	[0.043-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-14	(154 ms)	0.0450318	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-13	(162 ms)	0.0438504	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-13	(150 ms)	0.0438187	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-13	(144 ms)	0.0453833	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	2E-10	(-54 ms)	0.0400746	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-9	(172 ms)	0.0368667	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-42	(52 ms)	0.0848604	[0.073-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-39	(36 ms)	0.0813889	[0.069-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-34	(66 ms)	0.0751185	[0.063-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-34	(34 ms)	0.0760447	[0.064-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-30	(88 ms)	0.0694027	[0.057-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-30	(86 ms)	0.0706733	[0.059-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-30	(72 ms)	0.0702085	[0.058-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-25	(30 ms)	0.065153	[0.053-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-25	(-178 ms)	0.0649563	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-25	(-176 ms)	0.0648005	[0.053-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-24	(104 ms)	0.0619437	[0.05-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-24	(-182 ms)	0.0636574	[0.051-0.076] unit increase	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-19	(112 ms)	0.0547346	[0.043-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-18	(128 ms)	0.052824	[0.041-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-17	(130 ms)	0.0511514	[0.039-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-16	(140 ms)	0.0492772	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-16	(132 ms)	0.0498667	[0.038-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-14	(152 ms)	0.04548	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-12	(166 ms)	0.0430346	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-12	(160 ms)	0.0426343	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-12	(156 ms)	0.0419206	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs883079-C	0.281661	1E-10	(-38 ms)	0.0403254	[0.028-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	12q24.21	TBX5	rs883079-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	12q24.21		rs883079-T	0.41678171	2E-9		1.0713853	[1.047593423-1.095717474]	Illumina [8919992] (imputed)	N
1460	chr12	114793239	114793240	rs883079	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q24.21	TBX5, TBX3	rs883079-C	0.338	4E-12	(AA)	0.1153	[0.083-0.148] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1460	chr12	114793239	114793240	rs883079	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	12q24.21	NR	rs883079-?	NR	6E-7		0.4812408	[0.29-0.67] unit decrease	Illumina [26566045] (imputed)	N
1460	chr12	114793239	114793240	rs883079	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q24.21	TBX5	rs883079-T	0.707	3E-40		1.1	[1.09-1.12]	Illumina [34740186] (imputed)	N
1460	chr12	114793239	114793240	rs883079	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.21	TBX5	rs883079-T	0.72	5E-41	(EA)	1.12	[1.1-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1460	chr12	114793239	114793240	rs883079	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.21	TBX5	rs883079-T	0.69	1E-51		1.13	[1.11-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1460	chr12	114793239	114793240	rs883079	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	12q24.21	TBX5	rs883079-T	0.42	5E-15	(Japanese)	1.184	[1.134-1.236]	Illumina [5018049] (imputed)	N
1460	chr12	114793239	114793240	rs883079	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	12q24.21	TBX5	rs883079-T	0.72	1E-13		1.11	[1.08-1.15]	Affymetrix, Illumina [11795432] (imputed)	N
1460	chr12	114793239	114793240	rs883079	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	12q24.21	TBX5	rs883079-T	0.7	2E-15		1.11	[1.09-1.19]	Affymetrix, Illumina [11795432] (imputed)	N
1460	chr12	114793239	114793240	rs883079	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs883079-?	NR	5E-16	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1460	chr12	114793239	114793240	rs883079	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs883079-?	NR	8E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1460	chr12	114793239	114793240	rs883079	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	12q24.21	TBX5	rs883079-T	0.71	1E-10	(European)	0.49	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1460	chr12	114793239	114793240	rs883079	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	12q24.21	TBX5	rs883079-T	0.66	2E-6	(African American)	0.6	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1460	chr12	114793239	114793240	rs883079	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	12q24.21	TBX5	rs883079-T		2E-15		0.52	[0.38-0.66] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1460	chr12	114793239	114793240	rs883079	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	12q24.21	TBX5	rs883079-C	0.29	1E-10		0.49	[0.33-0.65] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1460	chr12	114795442	114795443	rs3825214	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	12q24.21	NR	rs3825214-?	NR	3E-7		1.270556	[0.78-1.76] unit decrease	Illumina [26703325] (imputed)	N
1460	chr12	114795442	114795443	rs3825214	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	12q24.21	TBX5	rs3825214-G	0.202513	8E-36		0.502192	[0.42-0.58] ms increase	Illumina [162199]	N
1460	chr12	114795442	114795443	rs3825214	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	12q24.21	TBX5	rs3825214-G	0.195648318807515	2E-17		0.48374233	[0.37-0.6] ms increase	Illumina [213295]	N
1460	chr12	114795442	114795443	rs3825214	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs3825214-?	NR	3E-12	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1460	chr12	114795442	114795443	rs3825214	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	TBX5	rs3825214-G	0.22	3E-13	(QRS duration)	7.35	[5.37-9.33] % s.d. increase	Illumina [306060]	N
1460	chr12	114795442	114795443	rs3825214	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	TBX5	rs3825214-G	0.22	3E-12	(PR interval)	7.36	[5.29-9.43] % s.d. increase	Illumina [306060]	N
1460	chr12	114795442	114795443	rs3825214	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	12q24.21	TBX5	rs3825214-G	0.22	1E-7	(QT interval)	5.88	[3.72-8.03] % s.d. increase	Illumina [306060]	N
1460	chr12	114799973	114799974	rs7312625	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	12q24.21	TBX5	rs7312625-G	0.27	2E-18		0.8	[0.62-0.98] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1460	chr12	114799973	114799974	rs7312625	21347284	Smith JG	2011-02-10	PLoS Genet	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	12q24.21	TBX5	rs7312625-A	0.71	7E-9		3.23	[2.15-4.31] unit decrease	Affymetrix [2801419] (imputed)	N
1460	chr12	114801771	114801772	rs7135659	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	12q24.21	NR	rs7135659-?	NR	5E-6		1.075213	[0.62-1.54] unit decrease	Illumina [26703325] (imputed)	N
1460	chr12	114801771	114801772	rs7135659	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	PR interval	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	12q24.21	TBX5, TBX3	rs7135659-G	0.57	7E-7		1.99	[1.21-2.77] unit increase	Affymetrix [2100000] (imputed)	N
1460	chr12	114802137	114802138	rs1895585	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	12q24.21	TBX5	rs1895585-A	0.30	1E-19		3.19	[2.50-3.88] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
1460	chr12	114804579	114804580	rs3782464	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q24.21	NR	rs3782464-?	NR	7E-6	(AA)	0.3457	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1460	chr12	114805057	114805057	rs148020424	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	12q24.21	TBX5	rs148020424-G	0.27	6E-13	(EA)	0.85	[0.61-1.09] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1460	chr12	114805057	114805057	rs148020424	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	12q24.21	TBX5	rs148020424-?	0.27	6E-13	(EA)	0.85	[0.61-1.09] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1460	chr12	114807034	114807035	rs1895582	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	12q24.21	TBX5	rs1895582-G	0.28	1E-8	(AA)	1.33	[0.88-1.78] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1460	chr12	114808443	114808443	rs142620191	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	12q24.21	NR	rs142620191-CCT	0.2008	1E-6		0.1831	[0.11-0.26] unit increase	Illumina [10677593] (imputed)	N
1460	chr12	114818737	114818738	rs2551395	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12q24.21	TBX5	rs2551395-T	0.99191748424767	4E-6		0.014189	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1461	chr12	114830346	114830347	rs1895610	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	12q24.21	NR	rs1895610-A	0.364	1E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
1461	chr12	114832359	114832360	rs2236018	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Receptive language ability	400 European ancestry children	NA	12q24.21	TBX5	rs2236018-A	NR	8E-6		4.92	NR unit decrease	Illumina [299604]	N
1461	chr12	114837348	114837349	rs77357563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q24.21		rs77357563-A	NR	2E-16		0.1237	[0.094-0.153] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1461	chr12	114837348	114837349	rs77357563	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	12q24.21		rs77357563-?	NR	4E-8		0.0830527	[0.053-0.113] unit decrease	NR [9800000] (imputed)	N
1461	chr12	114837348	114837349	rs77357563	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.21		rs77357563-A	0.0052	9E-11		0.9327554	[0.62-1.24] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1461	chr12	114837348	114837349	rs77357563	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.21		rs77357563-A	0.0053	8E-22		0.97562885	[0.76-1.19] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1461	chr12	114837348	114837349	rs77357563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs77357563-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1461	chr12	114837760	114837761	rs1946299	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	12q24.21		rs1946299-G	0.4	3E-8		1.24		NR [NR] (imputed)	N
1461	chr12	114840090	114840091	rs2555005	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	12q24.21		rs2555005-A	0.5	1E-8		1.15		NR [NR] (imputed)	N
1461	chr12	114852119	114852120	rs61931005	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs61931005-G	0.887085	7E-10	(60 ms)	0.0532167	[0.036-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1461	chr12	114852119	114852120	rs61931005	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX5	rs61931005-G	0.887085	2E-9	(62 ms)	0.0520504	[0.035-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1461	chr12	114857693	114857694	rs1895595	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	12q24.21	LOC255480	rs1895595-?	NR	9E-8	(Hispanic/Latino)	1.799684	[1.14-2.46] unit decrease	Illumina [26703325] (imputed)	N
1461	chr12	114857693	114857694	rs1895595	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	12q24.21	LOC255480	rs1895595-?	NR	2E-11		2.023096	[1.43-2.62] unit decrease	Illumina [26703325] (imputed)	N
1461	chr12	114861676	114861677	rs149932627	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	12q24.21	TBX5-AS1, TBX3	rs149932627-C	0.012	7E-6		2.55	[1.56-4.19]	Affymetrix [up to 27494467] (imputed)	N
1461	chr12	114868137	114868138	rs1265507	22532574	Stevens KN	2012-04-24	Hum Mol Genet	Identification of a novel percent mammographic density locus at 12q24.	Percent mammographic density	1,241 European ancestry female individuals	9,126 European ancestry individuals	12q24.21	TBX5, TBX3	rs1265507-?	NR	1E-8				Illumina [2510880]	N
1461	chr12	114874455	114874456	rs2686570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.21	TBX5-AS1	rs2686570-A	NR	2E-10		0.0251883	[0.017-0.033] unit decrease	Affymetrix [321788] (imputed)	N
1461	chr12	114874455	114874456	rs2686570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.21	TBX5-AS1	rs2686570-A	NR	2E-8		0.0212324	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1461	chr12	114879552	114879553	rs2686573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.21	TBX5-AS1	rs2686573-A	NR	8E-11		0.0215654	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1461	chr12	114909123	114909124	rs12304955	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.21	NR	rs12304955-T	0.0122	2E-10	(GATD3A)	0.2061	NR unit increase	Illumina [1671387] (imputed)	N
1461	chr12	114932904	114932905	rs11067145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.21		rs11067145-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1462	chr12	115044717	115044718	rs144116066	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	12q24.21	NR	rs144116066-C		4E-6		0.1195	[0.069-0.17] SD units decrease	NR [10700000] (imputed)	N
1462	chr12	115057887	115057888	rs188348223	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs188348223-G	0.98557	5E-8	(-32 ms)	0.132287	[0.085-0.18] unit decrease	Affymetrix [10000000] (imputed)	N
1462	chr12	115058451	115058452	rs7968307	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (lumbar spine) in inflammatory bowel disease	254 Japanese ancestry cases	NA	12q24.21	TBX3	rs7968307-C	NR	1E-6		0.52	[NR] unit increase	Affymetrix [4384682] (imputed)	N
1463	chr12	115084833	115084834	rs4303277	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.21	Y_RNA	rs4303277-A	0.8711	3E-6		0.0421	[0.024-0.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1463	chr12	115091016	115091017	rs12810346	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.21	TBX5-AS1, TBX3	rs12810346-T	0.15	9E-9	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1463	chr12	115091016	115091017	rs12810346	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.21	TBX5-AS1, TBX3	rs12810346-T	0.15	9E-9	(EA)	1.07		Affymetrix, Illumina [up to 12149979] (imputed)	N
1463	chr12	115091016	115091017	rs12810346	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.21	TBX5-AS1, TBX3	rs12810346-T	0.15	2E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.21	TBX3	rs11067228-A	0.54883	2E-17		0.0157932	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.21		rs11067228-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.21		rs11067228-?	NR	3E-18		0.0171922	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q24.21	TBX3	rs11067228-A	0.550075	2E-11		0.0224983	[0.016-0.029] unit decrease	NR [17166351] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	12q24.21	TBX3	rs11067228-A	0.54991	4E-7	(men)	0.0269741	[0.017-0.037] unit decrease	NR [17166351] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	12q24.21	TBX3	rs11067228-A	0.54	1E-14		0.0439143	[0.033-0.055] unit increase	Affymetrix [10109774] (imputed)	N
1463	chr12	115094259	115094260	rs11067228	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	12q24.21	TBX3	rs11067228-A	0.56	2E-11		8.3	[NR] % increase	Illumina [304070]	N
1463	chr12	115098093	115098094	rs9634162	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	12q24.21		rs9634162-A	NR	2E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1463	chr12	115100713	115100714	rs1427760	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q24.21	TBX3, MED13L	rs1427760-C	0.5268	3E-7		1.05	[1.03-1.06]	Affymetrix, Illumina [16900397] (imputed)	N
1463	chr12	115106687	115106688	rs12422933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.21		rs12422933-A	NR	2E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1463	chr12	115108135	115108136	rs1061657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.21	NR	rs1061657-C	NR	7E-17		0.0229	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1463	chr12	115108135	115108136	rs1061657	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.21	TBX3	rs1061657-T	0.7421	4E-16		0.0176	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1463	chr12	115108135	115108136	rs1061657	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	12q24.21	NR	rs1061657-?	NR	6E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1463	chr12	115108135	115108136	rs1061657	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	12q24.21	NR	rs1061657-C	0.26	3E-10		1.04	[1.03-1.06]	Illumina [~ 10800000] (imputed)	N
1463	chr12	115108360	115108361	rs1061651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.21		rs1061651-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1463	chr12	115108906	115108907	rs8853	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	12q24.21		rs8853-C	0.494	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [42907111] (imputed)	N
1463	chr12	115108906	115108907	rs8853	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	12q24.21	TBX3	rs8853-C	0.494	4E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [42907111] (imputed)	N
1463	chr12	115116351	115116352	rs59336	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	12q24.21	TBX3	rs59336-T	0.48	4E-7		1.09	[1.06-1.13]	Affymetrix, Illumina [2708280] (imputed)	N
1463	chr12	115121188	115121189	rs2242442	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	12q24.21	NR	rs2242442-A	0.24	1E-6		0.256	[0.15-0.36] unit increase	Illumina [5418572] (imputed)	N
1463	chr12	115132385	115132386	rs11067238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q24.21		rs11067238-G	NR	5E-8		0.0136	[0.0087-0.0185] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1463	chr12	115156522	115156523	rs6489973	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	12q24.21	TBX3	rs6489973-G	0.412	5E-10		1.157	[0.79-1.52] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	8E-45	(-10 ms)	0.0817208	[0.07-0.093] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	7E-58	(8 ms)	0.0922935	[0.081-0.104] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	7E-19	(28 ms)	0.0506523	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	6E-35	(-28 ms)	0.0711259	[0.06-0.083] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	6E-31	(-14 ms)	0.0671853	[0.056-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	6E-12	(-24 ms)	0.0392177	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	5E-63	(16 ms)	0.0971619	[0.086-0.109] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	5E-63	(10 ms)	0.0967415	[0.085-0.108] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	5E-16	(30 ms)	0.0453891	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-40	(-4 ms)	0.0770193	[0.066-0.089] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-37	(2 ms)	0.0737256	[0.062-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-35	(0 ms)	0.0717265	[0.06-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-30	(24 ms)	0.0655597	[0.054-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-24	(26 ms)	0.0576232	[0.046-0.069] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	4E-24	(-26 ms)	0.0584715	[0.047-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	3E-33	(-32 ms)	0.0688997	[0.057-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	3E-24	(-34 ms)	0.0590213	[0.047-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	3E-13	(32 ms)	0.0404915	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	2E-55	(18 ms)	0.0912102	[0.08-0.103] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	2E-45	(-8 ms)	0.0822941	[0.071-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	2E-43	(-6 ms)	0.0803485	[0.069-0.092] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	2E-40	(-12 ms)	0.0769275	[0.065-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	2E-37	(-30 ms)	0.0740703	[0.062-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-67	(12 ms)	0.0996159	[0.088-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-66	(14 ms)	0.0997324	[0.088-0.111] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-50	(6 ms)	0.0859334	[0.074-0.097] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-45	(20 ms)	0.0826862	[0.071-0.094] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-42	(4 ms)	0.078949	[0.067-0.09] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-37	(22 ms)	0.0741964	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115164023	115164024	rs11067264	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs11067264-G	0.629537	1E-36	(-2 ms)	0.0733344	[0.062-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1463	chr12	115184052	115184053	rs11067278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.21		rs11067278-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1463	chr12	115184052	115184053	rs11067278	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12q24.21	TBX3, MED13L	rs11067278-C	0.36	2E-6	(women)	0.085	[0.05-0.12] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1463	chr12	115187933	115187934	rs12578160	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	12q24.21	RP4-601P9.2, TBX3, OSTF1P1	rs12578160-A	NR	2E-6	(wake after sleep onset)	0.07316	[0.043-0.103] unit increase	Affymetrix [7141204] (imputed)	N
1463	chr12	115201435	115201436	rs10850377	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX3	rs10850377-A	0.3408	2E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1463	chr12	115201435	115201436	rs10850377	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX3	rs10850377-A	0.3408	4E-15		0.0195	[0.015-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1463	chr12	115201435	115201436	rs10850377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.21		rs10850377-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1463	chr12	115201435	115201436	rs10850377	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	12q24.21	TBX3, MED13L	rs10850377-G	NR	5E-9	(adults)	0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1463	chr12	115201435	115201436	rs10850377	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	12q24.21	TBX3, MED13L	rs10850377-G	NR	3E-12	(adults)	0.035	[0.025-0.045] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1464	chr12	115214547	115214548	rs10850382	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	12q24.21	LOC107984437	rs10850382-T	0.30825800000000003	2E-7		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1464	chr12	115214547	115214548	rs10850382	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	12q24.21	LOC107984437	rs10850382-T	0.31	3E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1464	chr12	115253037	115253038	rs12317967	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	12q24.21	TBX3	rs12317967-T	0.38046814621409925	2E-6	(AA)	0.402	[0.23-0.57] unit decrease	Illumina [at least 988306] (imputed)	N
1465	chr12	115344560	115344561	rs7301743	27195777	Sano M	2016-05-19	PLoS One	Genome-Wide Association Study of Absolute QRS Voltage Identifies Common Variants of TBX3 as Genetic Determinants of Left Ventricular Mass in a Healthy Japanese Population.	Left ventricular QRS voltage	2,994 Japanese ancestry individuals	2,941 Japanese ancestry individuals	12q24.21	MED13L, TBX3	rs7301743-?	NR	8E-8	(RV5)	0.041	[0.025-0.057] unit decrease	Illumina [~ 2500000]	N
1465	chr12	115346423	115346424	rs1896312	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	12q24.21	TBX3	rs1896312-C	0.29	1E-34		1.6	[1.35-1.85] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1465	chr12	115346423	115346424	rs1896312	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	12q24.21	TBX5, TBX3	rs1896312-C	0.28	3E-17		1.95	[1.50-2.40] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1465	chr12	115349496	115349497	rs1124477	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q24.21	TBX5, TBX3	rs1124477-T	0.3102	3E-69		1.2151	[1.08-1.35] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1465	chr12	115349496	115349497	rs1124477	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	12q24.21	TBX3	rs1124477-T	0.28	1E-14	(SVG magnitude)	0.1	[0.075-0.125] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1465	chr12	115352730	115352731	rs2384550	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.21	TBX3, MIR620	rs2384550-G		3E-7		0.204	unit increase	Affymetrix [at least 2696785] (imputed)	N
1465	chr12	115352730	115352731	rs2384550	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.21	TBX3, MIR620	rs2384550-G		1E-6		0.117	unit increase	Affymetrix [at least 2696785] (imputed)	N
1465	chr12	115352730	115352731	rs2384550	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.21	intergenic	rs2384550-A	0.345606190751143	4E-9		0.2811362	[0.19-0.37] unit decrease	Illumina [247039]	N
1465	chr12	115352730	115352731	rs2384550	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	12q24.21	TBX5, TBX3	rs2384550-G	0.66	4E-6	(Mean Arterial Pressure)	0.227	[0.13-0.32] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1465	chr12	115352730	115352731	rs2384550	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	12q24.21	TBX5, TBX3	rs2384550-A	0.35	4E-8		0.35	[0.23-0.47] mm Hg decrease	Affymetrix, Illumina [2533153] (imputed)	N
1465	chr12	115353099	115353100	rs7958534	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	12q24.21	TBX3	rs7958534-G	0.336	1E-7		1.86	[1.47-2.35]	Affymetrix, Illumina [82996] (imputed)	N
1465	chr12	115353702	115353703	rs7487237	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	12q24.21	TBX3	rs7487237-G	0.719	5E-9		0.58	[0.39-0.77] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1465	chr12	115353800	115353801	rs7484657	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	12q24.21	TBX3	rs7484657-?	NR	4E-11				Affymetrix, Illumina [22000000] (imputed)	N
1465	chr12	115356190	115356191	rs36032647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs36032647-G	0.619819	2E-16				Affymetrix, Illumina [17210439] (imputed)	N
1465	chr12	115356682	115356683	rs80243479	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 14)	2,595 Tanzanian ancestry individuals	NA	12q24.21		rs80243479-?	NR	2E-8				Illumina [NR] (imputed)	N
1465	chr12	115358177	115358178	rs4767279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.21		rs4767279-T	0.378771	4E-14		0.017183084	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1465	chr12	115358177	115358178	rs4767279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.21	NR	rs4767279-C	0.620922	1E-18		0.017235	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1465	chr12	115362971	115362972	rs7977151	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	12q24.21	TBX3	rs7977151-A	0.303755	3E-7		0.227892	[0.14-0.31] unit decrease	Affymetrix [8590397] (imputed)	N
1465	chr12	115363750	115363751	rs3914956	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	12q24.21	TBX3	rs3914956-A	0.73	3E-10	(European)	0.48	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1465	chr12	115363750	115363751	rs3914956	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	12q24.21	TBX3	rs3914956-A		1E-9		0.41	[0.27-0.55] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1465	chr12	115365210	115365211	rs7966951	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	12q24.21	TBX3	rs7966951-A	0.26	2E-16	(SVG elevation)	0.11	[0.083-0.137] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.21		rs7309382-C	NR	2E-11		0.0111	[0.008-0.0142] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.21		rs7309382-C	NR	1E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Receptor for advanced glycosylation end products levels	21,758 European ancestry individuals	9,173 individuals	12q24.21		rs7309382-T	0.58	1E-8		0.0511	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.21		rs7309382-C	0.405319	4E-12		0.015667224	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.401337	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.407452	4E-13		0.01365	[0.01-0.0173] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.401388	6E-18				Affymetrix, Illumina [24653286] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.407439	4E-19		0.016775	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.402468	1E-18				Affymetrix, Illumina [24558453] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q24.21	NR	rs7309382-C	0.407471	7E-20		0.017177	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1465	chr12	115366181	115366182	rs7309382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.21		rs7309382-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1465	chr12	115370346	115370347	rs7959016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs7959016-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1465	chr12	115371957	115371958	rs7966651	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	12q24.21	intergenic	rs7966651-T	0.295492	4E-24		0.360716	[0.29-0.43] ms decrease	Illumina [162199]	N
1465	chr12	115371957	115371958	rs7966651	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	12q24.21	intergenic	rs7966651-T	0.267298557146861	9E-17		0.42492944	[0.32-0.53] ms decrease	Illumina [213295]	N
1465	chr12	115373278	115373279	rs35514224	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.21	NR	rs35514224-C	0.423477	4E-9		0.0184278	[0.012-0.025] unit increase	NR [19129689] (imputed)	N
1465	chr12	115373935	115373936	rs2217170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.21		rs2217170-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1465	chr12	115378036	115378037	rs10850407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.21		rs10850407-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1465	chr12	115380392	115380393	rs10850408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.21		rs10850408-T	0.327355	9E-12		0.016066844	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1465	chr12	115380392	115380393	rs10850408	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	12q24.21	intergenic	rs10850408-?	NR	9E-7		1.59	[1.32-1.92]	Illumina [2505093] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	9E-17	(0 ms)	0.0511054	[0.039-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	8E-23	(-38 ms)	0.0621283	[0.05-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	7E-16	(4 ms)	0.0486257	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	7E-126	(-24 ms)	0.149067	[0.14-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	5E-40	(-36 ms)	0.0834682	[0.071-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	5E-17	(2 ms)	0.0506046	[0.038-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	4E-140	(-26 ms)	0.157271	[0.14-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	3E-28	(16 ms)	0.0674538	[0.055-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	3E-19	(24 ms)	0.0547751	[0.043-0.067] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	3E-16	(-4 ms)	0.0486386	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	3E-14	(26 ms)	0.0462906	[0.034-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	3E-13	(-6 ms)	0.0430662	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-71	(-34 ms)	0.110641	[0.098-0.123] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-27	(20 ms)	0.0670853	[0.055-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-24	(22 ms)	0.0619779	[0.05-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-14	(6 ms)	0.04605	[0.034-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-139	(-28 ms)	0.156829	[0.14-0.17] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	2E-126	(-30 ms)	0.149017	[0.14-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	1E-30	(18 ms)	0.0698262	[0.058-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	1E-16	(-2 ms)	0.0507724	[0.038-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs7132327-T	0.732768	1E-104	(-32 ms)	0.134296	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		12q24.21	NR	rs7132327-C	0.27164	5E-6		0.05422	[0.031-0.077] unit decrease	Affymetrix [14134301] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		12q24.21	NR	rs7132327-C	0.27164	2E-8		0.066335	[0.043-0.09] unit decrease	Affymetrix [14134301] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		12q24.21	NR	rs7132327-C	0.27164	5E-11		0.077704	[0.055-0.101] unit decrease	Affymetrix [14134301] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		12q24.21	NR	rs7132327-C	0.27164	7E-7		0.058784	[0.036-0.082] unit decrease	Affymetrix [14134301] (imputed)	N
1465	chr12	115381070	115381071	rs7132327	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	TBX3	rs7132327-?	NR	1E-17	(EA)	217.11	[167.33-266.89] unit decrease	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1465	chr12	115381146	115381147	rs7301677	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	12q24.21	TBX3	rs7301677-T	0.26	2E-24	(QRS-T angle)	0.14	[0.11-0.17] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
1465	chr12	115381739	115381740	rs10850409	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs10850409-?	NR	5E-13	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1465	chr12	115381739	115381740	rs10850409	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs10850409-?	NR	6E-17	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1465	chr12	115381739	115381740	rs10850409	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs10850409-?	NR	1E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1465	chr12	115381739	115381740	rs10850409	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	12q24.21	NR	rs10850409-?	NR	1E-17	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1465	chr12	115381739	115381740	rs10850409	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	12q24.21	MED13, TBX3	rs10850409-A	0.273	8E-13		1.651	[1.20-2.10] unit increase	Illumina [2300000] (imputed)	N
1465	chr12	115395279	115395280	rs1896313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.21		rs1896313-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1465	chr12	115397351	115397352	rs7310521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q24.21	RP11-25E2.1	rs7310521-A	NR	4E-8		0.0173232	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1465	chr12	115412026	115412027	rs142576422	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs142576422-G	0.979041	8E-9	(-32 ms)	0.118937	[0.078-0.16] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115412026	115412027	rs142576422	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs142576422-G	0.979041	8E-9	(-28 ms)	0.116562	[0.076-0.158] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115412026	115412027	rs142576422	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs142576422-G	0.979041	5E-9	(-30 ms)	0.119599	[0.078-0.161] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115412026	115412027	rs142576422	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.21	TBX3	rs142576422-G	0.979041	5E-8	(-26 ms)	0.108542	[0.068-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
1465	chr12	115412742	115412743	rs10744843	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	12q24.21	TBX3, MED13L	rs10744843-A	0.27	5E-8	(Profile nasal angle)	0.006	[NR] unit decrease	Affymetrix [311944]	N
1465	chr12	115419854	115419855	rs2098990	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	12q24.21		rs2098990-A	0.47360515	7E-25				Illumina [7417619] (imputed)	N
1465	chr12	115420239	115420240	rs1863716	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	12q24.21	TBX3	rs1863716-A	0.46	1E-10	(pronasale-right alare distance)	0.089	NR unit decrease	Illumina [7029494] (imputed)	N
1465	chr12	115429352	115429353	rs2384506	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.21	NR	rs2384506-?	NR	1E-9				Affymetrix [NR]	N
1465	chr12	115437606	115437607	rs11067360	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Balance difficulty in Charcot-Marie-Tooth disease type 1A	352 European ancestry severe cases, 61 European ancestry mild cases	NA	12q24.21	NR	rs11067360-?		1E-6				Illumina [600000]	N
1465	chr12	115455512	115455513	rs2287571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q24.21		rs2287571-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1465	chr12	115466265	115466266	rs2287568	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	12q24.21	NR	rs2287568-?	NR	5E-9		5.838	NR z score increase	Illumina [at least 830937] (imputed)	N
1465	chr12	115468958	115468959	rs144700679	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	12q24.21	NR	rs144700679-?		4E-7	(PCB194)	1.3	[0.79-1.81] unit decrease	Illumina [8736858] (imputed)	N
1466	chr12	115486906	115486907	rs2287563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.21	NR	rs2287563-T	NR	3E-11		0.0217	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1466	chr12	115488673	115488674	rs2193759	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	12q24.21		rs2193759-A	0.48	3E-8		0.025	L increase	Affymetrix [NR] (imputed)	N
1466	chr12	115500690	115500691	rs35506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.21		rs35506-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1466	chr12	115500690	115500691	rs35506	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	12q24.21	TBX3, MED13L	rs35506-A	0.7125	1E-9		0.027	[0.019-0.035] unit increase	Affymetrix [27624732] (imputed)	N
1466	chr12	115501126	115501127	rs35505	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX3	rs35505-A	0.6861	2E-18		0.0223	[0.017-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1466	chr12	115501126	115501127	rs35505	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	12q24.21	TBX3	rs35505-A	0.6861	1E-14		0.0195	[0.015-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1466	chr12	115502717	115502718	rs2194980	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	12q24.21	intergenic	rs2194980-?	0.33	3E-7	(Tyrosine)			Affymetrix [187454]	N
1466	chr12	115508132	115508133	rs35498	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q24.21	NR	rs35498-T	NR	7E-6	(female)	0.1196	[0.067-0.172] unit increase	Illumina [11133794] (imputed)	N
1466	chr12	115527502	115527503	rs12811045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q24.21		rs12811045-G	NR	6E-9		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1466	chr12	115527502	115527503	rs12811045	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.21	TBX3	rs12811045-A	0.784468	5E-18		0.00537591	[0.0041-0.0066] unit decrease	Affymetrix [13995440] (imputed)	N
1466	chr12	115552436	115552437	rs35444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q24.21		rs35444-G	NR	3E-30		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1466	chr12	115552436	115552437	rs35444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.21		rs35444-G	0.381834	5E-12		0.015822329	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1466	chr12	115552436	115552437	rs35444	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.21	intergenic	rs35444-G	0.6147	9E-29		0.3671	[0.3-0.43] mmHg increase	Affymetrix [NR] (imputed)	N
1466	chr12	115552436	115552437	rs35444	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	TBX5-TBX3	rs35444-A	0.75	1E-13	(Japanese)	0.6342	[0.47-0.8] unit increase	Illumina [6200000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	TBX5, TBX3	rs35444-A	0.7453	5E-16	(Japanese)	0.4914	[0.37-0.61] unit increase	Illumina [6200000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q24.21	TBX5, TBX3	rs35444-A	0.7453	4E-10	(Japanese)	0.0934	[0.064-0.123] unit increase	Illumina [6200000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	TBX5-TBX3	rs35444-A	0.7453	2E-14	(Japanese)	0.4188	[0.31-0.53] unit increase	Illumina [6200000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35444-A	0.61	3E-25	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115552436	115552437	rs35444	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q24.21	TBX5, TBX3	rs35444-?	NR	1E-46				Affymetrix, Illumina [18800000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	12q24.21	TBX5, TBX3	rs35444-?		4E-46				Affymetrix, Illumina [18800000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	12q24.21	intergenic	rs35444-C	0.390370213067489	1E-11		0.31712052	[0.23-0.41] unit decrease	Illumina [247039]	N
1466	chr12	115552436	115552437	rs35444	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q24.21	TBX5-TBX3	rs35444-A	0.5956	4E-8		0.018	unit increase	Illumina [242296]	N
1466	chr12	115552436	115552437	rs35444	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	12q24.21	TBX3	rs35444-A	0.7405	8E-10	(East Asians)	0.675	[0.46-0.89] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q24.21	TBX3	rs35444-A	0.77	2E-7		0.83	[0.52-1.14] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1466	chr12	115552436	115552437	rs35444	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.21	TBX3	rs35444-A	0.75	8E-7	(Systolic)	0.63	[0.38-0.88] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1466	chr12	115552436	115552437	rs35444	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	12q24.21	TBX3	rs35444-A	0.75	1E-10	(Diastolic)	0.5	[0.34-0.66] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1466	chr12	115552498	115552499	rs2891546	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q24.21	TBX5, TBX3	rs2891546-A	0.11	1E-7		0.529	[0.33-0.72] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1466	chr12	115552498	115552499	rs2891546	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	12q24.21	TBX5, TBX3	rs2891546-A	0.11	5E-10		0.38	[0.26-0.5] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1466	chr12	115552507	115552508	rs192267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q24.21		rs192267-T	0.330284741	1E-9		0.05322162	[0.036-0.07] unit decrease	Illumina [13134967] (imputed)	N
1466	chr12	115552877	115552878	rs35443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q24.21		rs35443-C	NR	5E-27		0.0666	[0.054-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1466	chr12	115552877	115552878	rs35443	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	LOC102723639	rs35443-C	0.25	1E-13	(Japanese)	0.6354	[0.47-0.8] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115552877	115552878	rs35443	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	LOC102723639	rs35443-C	0.2547	4E-16	(Japanese)	0.4927	[0.37-0.61] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115552877	115552878	rs35443	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q24.21	LOC102723639	rs35443-C	0.2547	4E-10	(Japanese)	0.0934	[0.064-0.123] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115552877	115552878	rs35443	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	LOC102723639	rs35443-C	0.2547	2E-14	(Japanese)	0.4202	[0.31-0.53] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35443-C	0.36	1E-41	(AA, Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35443-C	0.36	7E-34	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35443-C	0.36	2E-40	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	12q24.21	TBX3, MED13L	rs35443-?	NR	5E-15		0.03405	[0.026-0.043] unit decrease	Illumina [6108953] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	12q24.21	TBX3, MED13L	rs35443-?	NR	1E-16		0.03619	[0.028-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1466	chr12	115552877	115552878	rs35443	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	12q24.21	TBX3, MED13L	rs35443-?	NR	4E-13		0.0315	[0.023-0.04] unit decrease	Illumina [6108953] (imputed)	N
1466	chr12	115553015	115553018	rs2067249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	12q24.21		rs2067249-C	0.255004166	9E-11		0.06052202	[0.042-0.079] unit decrease	Illumina [13134967] (imputed)	N
1466	chr12	115553033	115553034	rs35442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	12q24.21		rs35442-A	0.254015	2E-14		0.0292885	[0.022-0.037] unit decrease	Illumina [13477770] (imputed)	N
1466	chr12	115553033	115553034	rs35442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	12q24.21		rs35442-A	0.254027	2E-15		0.0309944	[0.023-0.039] unit decrease	Illumina [13477767] (imputed)	N
1466	chr12	115553033	115553034	rs35442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	12q24.21		rs35442-A	0.254008	2E-12		0.0280832	[0.02-0.036] unit decrease	Illumina [13477770] (imputed)	N
1466	chr12	115553114	115553115	rs35441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	12q24.21		rs35441-T	NR	2E-23		0.0672	[0.054-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1466	chr12	115553114	115553115	rs35441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	12q24.21		rs35441-T	NR	6E-15		0.0548	[0.041-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1466	chr12	115553114	115553115	rs35441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q24.21	NR	rs35441-T	0.381851	1E-32		0.022376	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1466	chr12	115553114	115553115	rs35441	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q24.21	RP11-25E2.1	rs35441-T	0.380577	1E-26		0.06619647	[0.054-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1466	chr12	115553114	115553115	rs35441	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.21	LOC102723639, TBX3	rs35441-T	0.39	5E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115553114	115553115	rs35441	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35441-T	0.39	1E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115553114	115553115	rs35441	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.21	LOC102723639, TBX3	rs35441-T	0.39	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115553114	115553115	rs35441	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	12q24.21	LOC102723639, TBX3	rs35441-T	0.39	8E-24	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115554085	115554085	rs11451130	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Agouti-related protein levels	21,758 European ancestry individuals	9,173 individuals	12q24.21		rs11451130-A	0.61	9E-11		0.058	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1466	chr12	115554085	115554085	rs11451130	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.21	intergenic	rs11451130-AT	0.6052	3E-8		0.1385	[0.09-0.187] mmHg increase	Affymetrix [NR] (imputed)	N
1466	chr12	115554522	115554523	rs35436	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q24.21	RP11-25E2.1	rs35436-T	0.382191	5E-23		0.0799003	[0.064-0.096] unit decrease	Affymetrix [7288503] (imputed)	N
1466	chr12	115554522	115554523	rs35436	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	NR	rs35436-T	0.2548	5E-19	(East Asian)	0.6529	[0.51-0.8] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115554522	115554523	rs35436	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	NR	rs35436-T	0.2548	2E-22	(East Asian)	0.5034	[0.4-0.6] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115554522	115554523	rs35436	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	12q24.21	NR	rs35436-T	0.2548	1E-20	(East Asian)	0.4303	[0.34-0.52] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115554522	115554523	rs35436	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	12q24.21	TBX3	rs35436-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1466	chr12	115554522	115554523	rs35436	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	12q24.21	TBX3	rs35436-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1466	chr12	115554675	115554676	rs35434	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	12q24.21	NR	rs35434-A	0.2541	4E-12	(East Asian)	0.0906	[0.065-0.116] unit decrease	Illumina [6200000] (imputed)	N
1466	chr12	115555529	115555530	rs35432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q24.21		rs35432-T	NR	3E-18		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1466	chr12	115555529	115555530	rs35432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.21		rs35432-T	0.381491	2E-19		0.020787349	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1466	chr12	115555529	115555530	rs35432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs35432-T	0.359132	1E-30				Affymetrix, Illumina [24588908] (imputed)	N
1466	chr12	115555806	115555807	rs1579381	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	12q24.21	LOC102723639, TBX3	rs1579381-C	0.89	3E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1466	chr12	115555866	115555867	rs35429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q24.21		rs35429-G	NR	2E-34		0.064	[0.054-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1466	chr12	115555866	115555867	rs35429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.21		rs35429-G	0.381957	5E-15		0.018026266	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1466	chr12	115555866	115555867	rs35429	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q24.21	RP11-25E2.1	rs35429-G	0.382183	2E-18		0.07223407	[0.056-0.088] unit decrease	Affymetrix [7288503] (imputed)	N
1466	chr12	115555866	115555867	rs35429	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	12q24.21	RP11-25E2.1	rs35429-G	0.383864	6E-11		0.05539161	[0.039-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
1466	chr12	115555866	115555867	rs35429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.21		rs35429-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1466	chr12	115555995	115555995	rs34495436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.21		rs34495436-TAAC	0.280208	2E-10		0.015867181	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1466	chr12	115556306	115556307	rs35427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q24.21		rs35427-G	NR	5E-26		0.0214	[0.017-0.025] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1466	chr12	115556306	115556307	rs35427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q24.21		rs35427-G	NR	4E-25		0.0222	[0.018-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1466	chr12	115556306	115556307	rs35427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	12q24.21		rs35427-G	0.257889573	3E-8		0.0965308	[0.062-0.131] unit decrease	Illumina [13429980] (imputed)	N
1466	chr12	115556306	115556307	rs35427	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q24.21	NR	rs35427-T	0.616743	3E-10		0.0171038	[0.011-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1466	chr12	115556306	115556307	rs35427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs35427-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1466	chr12	115556306	115556307	rs35427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.21	intergenic	rs35427-G	0.3828	2E-10		0.02486493	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1466	chr12	115556306	115556307	rs35427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.21	intergenic	rs35427-G	0.3828	4E-11		0.02555659	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1466	chr12	115583799	115583800	rs35423	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	12q24.21	intergenic	rs35423-T	0.46	8E-6		0.0356	[0.02-0.051] unit increase	Illumina [6380737] (imputed)	N
1467	chr12	115606206	115606207	rs35357	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	12q24.21	TBX3	rs35357-A	0.170853	8E-7		0.254058	[0.15-0.36] unit increase	Affymetrix [8590397] (imputed)	N
1467	chr12	115617640	115617641	rs55922880	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	12q24.21	NR	rs55922880-?	NR	1E-9		0.4066	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1467	chr12	115670801	115670802	rs118135986	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	12q24.21	NR	rs118135986-?	NR	3E-6		0.3457	[0.2-0.49] unit increase	Illumina [at least 560000] (imputed)	N
1467	chr12	115682994	115682995	rs77866669	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (stiff neck)	937 Japanese ancestry female cases, 4,797 Japanese ancestry female controls	944 Japanese ancestry female cases, 4,670 Japanese ancestry female controls	12q24.21	NR	rs77866669-C	0.126807442	2E-7		0.30520967	[0.19-0.42] unit decrease	Affymetrix [536506]	N
1467	chr12	115716843	115716844	rs1732579	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.21	NA	rs1732579-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
1468	chr12	115746948	115746949	rs2428247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q24.21		rs2428247-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1468	chr12	115746948	115746949	rs2428247	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.21	NR	rs2428247-T	0.410769	1E-9		0.0193074	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1468	chr12	115759817	115759818	rs7307989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q24.21		rs7307989-A	NR	5E-11		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1468	chr12	115779038	115779039	rs11067538	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.21	TBX3	rs11067538-?	NR	4E-6	(beta aminoisobutyric acid)	0.25854418	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1468	chr12	115814863	115814864	rs1391713	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	12q24.21		rs1391713-?	NR	6E-7		0.927587	[0.9-0.96]	NR [682398]	N
1468	chr12	115814864	115814865	rs725677	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	12q24.21		rs725677-C	NR	5E-9		1.084	[1.055-1.113]	Affymetrix [7846216] (imputed)	N
1468	chr12	115814864	115814865	rs725677	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	12q24.21		rs725677-C	NR	7E-12		1.0834	NR	Affymetrix [7846216] (imputed)	N
1468	chr12	115835384	115835385	rs10744856	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	12q24.21	UBA52P7	rs10744856-G	0.626	1E-8		1.13	[1.083-1.178]	Illumina [4946503] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	12q24.21		rs1292011-G	NR	1E-13		0.0757	[0.056-0.096] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12q24.21		rs1292011-A	NR	1E-47		1.09	[1.08-1.1]	Affymetrix, Illumina [NR] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	12q24.21	intergenic	rs1292011-?	NR	3E-8		1.12981	[1.08197-1.17975]	Illumina [4946503] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12q24.21	TBX3	rs1292011-A	0.58	4E-39		1.0869565	[1.06-1.11] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	12q24.21	NR	rs1292011-A	0.5800000000000001	1E-16		1.0869565	[1.06-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	12q24.21	NR	rs1292011-A	0.58	2E-21		1.0869565	[1.06-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1468	chr12	115836521	115836522	rs1292011	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	12q24.21	intergenic	rs1292011-A	0.58	9E-22		1.09	[1.06-1.11]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1469	chr12	115890921	115890922	rs7300312	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q24.21	MED13L	rs7300312-C	0.5719	8E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1469	chr12	115891402	115891403	rs7315438	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	12q24.21	NR	rs7315438-T	NR	1E-11		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1469	chr12	115891402	115891403	rs7315438	21761138	Peters U	2011-07-15	Hum Genet	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	12q24.21	MED13L	rs7315438-?	0.58	6E-6		1.11	[1.06-1.15]	Illumina [378739]	N
1469	chr12	115894189	115894190	rs7304462	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.21	RP11-116D17.1	rs7304462-G	0.44609	2E-11		0.0132349	[0.0094-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
1469	chr12	115894912	115894913	rs3858648	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	12q24.21		rs3858648-A	0.508	1E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [8817117] (imputed)	N
1469	chr12	115928439	115928440	rs10850519	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12q24.21	TBX5, TBX3	rs10850519-C	0.3	5E-13		0.214	[0.16-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1469	chr12	115928439	115928440	rs10850519	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	12q24.21	TBX5, TBX3	rs10850519-C	0.3	5E-13		0.214	[0.16-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1469	chr12	115928883	115928884	rs7135643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	12q24.21		rs7135643-C	NR	9E-9		0.0552	[0.036-0.074] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1469	chr12	115929190	115929191	rs4767327	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.21	NR	rs4767327-T	0.6180559999999999	8E-10		0.00496744	[0.0033-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1469	chr12	115929190	115929191	rs4767327	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.21	NR	rs4767327-T	0.6180559999999999	6E-7		0.00451595	[0.0026-0.0064] unit increase	Affymetrix [16582965] (imputed)	N
1469	chr12	115932271	115932272	rs4767332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs4767332-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1469	chr12	115934757	115934758	rs10850526	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.21	NR	rs10850526-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1469	chr12	115935058	115935059	rs2133319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.21		rs2133319-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1469	chr12	115942218	115942219	rs7962222	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q24.21	RP11-1028N23.3	rs7962222-C	0.35159	1E-8		0.036263403	[0.024-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
1469	chr12	115947900	115947901	rs7958945	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	12q24.21	MED13L	rs7958945-G	0.36	1E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1470	chr12	116001402	116001403	rs61929345	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	12q24.21		rs61929345-T	0.16	5E-8	(conditional)	1.11	[1.07-1.15]	Affymetrix, Illumina [NR] (imputed)	N
1470	chr12	116020394	116020395	rs71469726	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q24.21	NR	rs71469726-?	NR	9E-6		1925.1415	NR unit decrease	Illumina [2379855]	N
1470	chr12	116034440	116034441	rs10774823	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.21	TBX3	rs10774823-?	NR	3E-6	(TAG 58:11)	0.15544535	[0.09-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
1470	chr12	116068060	116068061	rs138157587	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.21	NR	rs138157587-T	0.01045	2E-9	(ACSS3)	0.2291	NR unit increase	Illumina [1671387] (imputed)	N
1470	chr12	116095167	116095168	rs11067709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.21		rs11067709-G	NR	2E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1470	chr12	116106754	116106755	rs6490030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.21		rs6490030-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1470	chr12	116118550	116118551	rs7139429	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	12q24.21	NR	rs7139429-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.5	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1471	chr12	116149842	116149843	rs117475996	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium R coprostanoligenes abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.21		rs117475996-A	0.0324719	4E-8		0.131382	[0.085-0.178] unit decrease	Illumina [7980478] (imputed)	N
1471	chr12	116154653	116154654	rs7975752	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	12q24.21	MED13L	rs7975752-G	0.25	2E-6	(Mexican, dominant )	1.76	[1.39-2.21]	Affymetrix [NR]	N
1471	chr12	116163431	116163432	rs1424609	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	12q24.21	NR	rs1424609-G	0.21	5E-6	(Mexican, dominant )	1.72	[1.36-2.18]	Affymetrix [NR]	N
1471	chr12	116172986	116172987	rs2161877	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	12q24.21	TBX3	rs2161877-?	0.61	3E-6	(female)	1.285347	[1.16-1.43]	Illumina [5595657] (imputed)	N
1471	chr12	116172986	116172987	rs2161877	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.21	NR	rs2161877-?	NR	4E-10				Affymetrix [NR]	N
1471	chr12	116187659	116187660	rs2460488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.21	NR	rs2460488-A	NR	3E-11		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1471	chr12	116187659	116187660	rs2460488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.21		rs2460488-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1471	chr12	116196316	116196316	rs34198321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.21		rs34198321-CAA	NR	1E-27		0.0228	[0.019-0.027] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1471	chr12	116196316	116196316	rs34198321	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.21	AC009387.1	rs34198321-CAA	0.7962	4E-20		0.022	[0.017-0.027] unit increase	Affymetrix [18391927] (imputed)	N
1471	chr12	116196321	116196322	rs12810788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.21		rs12810788-A	NR	1E-16		0.0217	[0.017-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1471	chr12	116196321	116196322	rs12810788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.21	NR	rs12810788-G	0.201167	2E-10		0.0247636	[0.017-0.032] unit increase	Affymetrix [16577313] (imputed)	N
1471	chr12	116196321	116196322	rs12810788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q24.21	NR	rs12810788-G	0.201198	3E-9		0.0152622	[0.01-0.02] unit increase	Affymetrix [16583148] (imputed)	N
1471	chr12	116196321	116196322	rs12810788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	12q24.21	NR	rs12810788-G	0.20114	1E-11		0.0270491	[0.019-0.035] unit increase	Affymetrix [16577424] (imputed)	N
1471	chr12	116197112	116197113	rs4767366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs4767366-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.21	MED13L	rs11067762-?	NR	1E-14				Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.21	MED13L	rs11067762-?	NR	1E-14				Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.21	MED13L	rs11067762-?		7E-6	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.21	MED13L	rs11067762-?	NR	5E-18				Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	12q24.21	MED13L	rs11067762-?	NR	1E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.21	MED13L	rs11067762-?	NR	7E-18				Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198213	116198214	rs11067762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	12q24.21	MED13L	rs11067762-?	NR	6E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1471	chr12	116198340	116198341	rs11067763	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	12q24.21	TBX3, MED13L	rs11067763-G	0.3322	9E-7	(DBP)	0.7157	NR unit decrease	Affymetrix [305158]	N
1471	chr12	116198340	116198341	rs11067763	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.21	TBX3, MIR620	rs11067763-A		3E-9		0.217	unit increase	Affymetrix [at least 2696785] (imputed)	N
1471	chr12	116198340	116198341	rs11067763	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q24.21	MED13L	rs11067763-A	0.62	6E-16		0.81	[0.61-1.01] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1471	chr12	116198340	116198341	rs11067763	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	12q24.21	MED13L	rs11067763-A	0.62	1E-7				Affymetrix, Illumina [2485448] (imputed)	N
1471	chr12	116198340	116198341	rs11067763	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	12q24.21	MED13L	rs11067763-A	0.62	2E-18		0.51	[0.39-0.63] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
1471	chr12	116211862	116211863	rs17719439	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q24.21	NR	rs17719439-G	0.96234668518024	1E-6	(IGP17)	0.4037	[0.24-0.57] unit decrease	Illumina [~ 2500000] (imputed)	N
1471	chr12	116227248	116227249	rs61928421	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12q24.21	MED13L	rs61928421-C	0.931471	5E-14		0.0867758	[0.064-0.109] unit increase	Affymetrix [509255] (imputed)	N
1471	chr12	116227248	116227249	rs61928421	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12q24.21	MED13L	rs61928421-C	0.93147	4E-15		0.0903676	[0.068-0.113] unit increase	Affymetrix [509255] (imputed)	N
1471	chr12	116227248	116227249	rs61928421	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12q24.21	MED13L	rs61928421-C	0.931505	2E-11		0.0769627	[0.054-0.1] unit increase	Affymetrix [509255] (imputed)	N
1471	chr12	116227248	116227249	rs61928421	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12q24.21	MED13L	rs61928421-C	0.931492	7E-12		0.0792017	[0.057-0.102] unit increase	Affymetrix [509255] (imputed)	N
1471	chr12	116227248	116227249	rs61928421	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	12q24.21	MED13L	rs61928421-C	0.931459	5E-11		0.0756478	[0.053-0.098] unit increase	Affymetrix [509255] (imputed)	N
1471	chr12	116228494	116228495	rs11067773	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	12q24.21	MED13L	rs11067773-C	0.09	1E-8		1.3	[0.85-1.75] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1471	chr12	116228494	116228495	rs11067773	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	12q24.21	MED13L	rs11067773-T	0.91	3E-11		0.628	[0.44-0.81] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1471	chr12	116245360	116245361	rs9651899	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.21	NR	rs9651899-?	NR	3E-11				Affymetrix [NR]	N
1472	chr12	116261410	116261411	rs75938105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.21	NR	rs75938105-T	NR	2E-11		0.0442	[0.031-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1472	chr12	116263754	116263755	rs7960215	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.21	NR	rs7960215-?		9E-7				Illumina [4322238] (imputed)	N
1472	chr12	116298612	116298613	rs2575286	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q24.21	NR	rs2575286-T	0.121813	3E-8		0.0817976	[0.053-0.111] unit decrease	Affymetrix [21375087] (imputed)	N
1472	chr12	116367380	116367381	rs111855470	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	12q24.21	intergenic	rs111855470-?	NR	3E-6		0.226	[0.13-0.33] unit increase	Illumina [at least 13000000] (imputed)	N
1472	chr12	116370431	116370432	rs7958254	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-632 abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.21		rs7958254-A	0.0334788	1E-8		0.125891	[0.082-0.169] unit increase	Illumina [7980478] (imputed)	N
1472	chr12	116391684	116391685	rs61936936	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q24.21	MED13L	rs61936936-A	0.900038	6E-9		0.0136211	[0.009-0.0182] unit decrease	Affymetrix [12370749]	N
1473	chr12	116400182	116400183	rs7308437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q24.21		rs7308437-G	0.229851	3E-8		0.0131346	[0.0085-0.0178] unit decrease	Illumina [13479295] (imputed)	N
1473	chr12	116413555	116413556	rs187309577	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.21		rs187309577-T	0.0110831	2E-12		0.177386	[0.13-0.23] unit increase	Illumina [7980478] (imputed)	N
1473	chr12	116414605	116414606	rs73196098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.21		rs73196098-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1473	chr12	116441886	116441887	rs143507801	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus faecalis abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.21		rs143507801-G	0.0110813	6E-11		0.202475	[0.14-0.26] unit increase	Illumina [7980478] (imputed)	N
1473	chr12	116450005	116450006	rs7962636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.21	Intergenic	rs7962636-T	0.3431	2E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1474	chr12	116529834	116529835	rs11067904	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.21	MED13L	rs11067904-?	NR	2E-8		0.01891137	[0.012-0.025] unit decrease	Illumina [27896057] (imputed)	N
1474	chr12	116535975	116535976	rs61939692	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q24.21	MED13L	rs61939692-A	0.1124	4E-9		1.073	NR	Affymetrix [9154080] (imputed)	N
1474	chr12	116555785	116555786	rs73200209	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	12q24.21	MED13L	rs73200209-A	0.803	3E-8	(European)	0.0451	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1474	chr12	116556582	116556583	rs117356123	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.21	NR	rs117356123-C	0.01916	9E-9	(SERPINA3)	0.1848	NR unit increase	Illumina [1671387] (imputed)	N
1474	chr12	116580290	116580291	rs113469387	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	12q24.21	MIR620	rs113469387-G	0.9068833	1E-8				Affymetrix, Illumina [NR] (imputed)	N
1474	chr12	116580290	116580291	rs113469387	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	12q24.21	MIR620	rs113469387-A	0.0931	9E-10		1.0975744	NR	Affymetrix, Illumina [NR] (imputed)	N
1474	chr12	116593346	116593347	rs17498550	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.21	MED13L	rs17498550-C	0.763265	8E-17		0.0180998	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
1474	chr12	116593346	116593347	rs17498550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.21		rs17498550-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1474	chr12	116593346	116593347	rs17498550	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.21		rs17498550-?	NR	1E-15		0.0200686	[0.015-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1474	chr12	116617756	116617757	rs61935843	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		12q24.21	MED13L	rs61935843-C	0.918	1E-7		0.028	[0.018-0.038] dioptres increase	NR [5901671] (imputed)	N
1474	chr12	116622958	116622958	rs150024806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.21	NR	rs150024806-TA	0.01916	9E-9	(SERPINA3)	0.1848	NR unit increase	Illumina [1671387] (imputed)	N
1475	chr12	116683587	116683588	rs61937364	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	12q24.21	AC060226.1	rs61937364-C	0.91623	5E-17				Affymetrix, Illumina [NR] (imputed)	N
1475	chr12	116699674	116699675	rs11615689	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q24.21	MED13L	rs11615689-T	0.8207	9E-11		0.1476	[0.1-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1475	chr12	116711986	116711987	rs75639744	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	12q24.21	NR	rs75639744-?	NR	1E-5		0.115336	[0.064-0.166] unit increase	NR [13958389] (imputed)	N
1475	chr12	116718711	116718712	rs532858205	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.21	MED13L	rs532858205-A	0.9981	1E-6		0.6084	[0.36-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1475	chr12	116719201	116719202	rs2392971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.21		rs2392971-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1475	chr12	116757485	116757486	rs17427318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.21		rs17427318-T	NR	2E-8		0.0168	[0.011-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1475	chr12	116757485	116757486	rs17427318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.21	NR	rs17427318-T	0.150525	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1475	chr12	116757485	116757486	rs17427318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.21	NR	rs17427318-T	0.1539	4E-10		0.016651	[0.011-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1475	chr12	116758165	116758166	rs74550975	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.21		rs74550975-G	0.14	9E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
1475	chr12	116758165	116758166	rs74550975	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.21		rs74550975-G	0.14	1E-11		6.77	z score increase	Affymetrix [9061022] (imputed)	N
1475	chr12	116758165	116758166	rs74550975	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.21	NR	rs74550975-G	0.1527	4E-11				NR [9056863] (imputed)	N
1475	chr12	116771070	116771071	rs58984824	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	12q24.21		rs58984824-?	NR	2E-8				NR [7857346] (imputed)	N
1475	chr12	116771070	116771071	rs58984824	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.21	ENSG00000258346	rs58984824-?	NR	2E-8		0.0096194	[0.0063-0.013] unit increase	Affymetrix [805426] (imputed)	N
1475	chr12	116772890	116772891	rs74643199	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	12q24.21	NR	rs74643199-T	0.1538	1E-8		0.0137	[0.009-0.0184] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1475	chr12	116775695	116775695	rs150828104	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q24.21	MED13L, MIR4472-2	rs150828104-T	NR	3E-6	(EA)	0.2596	[0.15-0.37] unit decrease	Illumina [~ 9000000] (imputed)	N
1475	chr12	116775695	116775695	rs150828104	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q24.21	MED13L, MIR4472-2	rs150828104-T	NR	2E-7		0.2736	[0.17-0.38] unit decrease	Illumina [~ 9000000] (imputed)	N
1476	chr12	116837346	116837347	rs60109929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q24.21		rs60109929-A	NR	3E-12		0.0249	[0.018-0.032] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1476	chr12	116837346	116837347	rs60109929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.21		rs60109929-A	0.078743	4E-16		0.03357687	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1476	chr12	116837346	116837347	rs60109929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.21		rs60109929-A	0.078731	2E-15		0.03275981	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1476	chr12	116837346	116837347	rs60109929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.21	NR	rs60109929-A	0.078432	9E-20		0.031628	[0.025-0.038] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1476	chr12	116837346	116837347	rs60109929	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	12q24.21	MED13L, LINC00173	rs60109929-A	0.09	9E-8		0.49	[0.31-0.67] unit increase	Illumina [8056701] (imputed)	N
1476	chr12	116839020	116839021	rs73204034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs73204034-T	0.0862256	1E-17				Affymetrix, Illumina [23467995] (imputed)	N
1476	chr12	116839020	116839021	rs73204034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	12q24.22	intergenic	rs73204034-T	0.0777	4E-12		0.0461222	[0.033-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1476	chr12	116839020	116839021	rs73204034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	12q24.22	intergenic	rs73204034-T	0.0777	1E-11		0.04496996	[0.032-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1476	chr12	116839020	116839021	rs73204034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	12q24.22	intergenic	rs73204034-T	0.0777	7E-9		0.03863894	[0.026-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1476	chr12	116880377	116880378	rs11613333	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	12q24.22	NR	rs11613333-C	0.421	3E-7	(Latino)	1.34	[1.20-1.50]	Affymetrix [9737707] (imputed)	N
1476	chr12	116880377	116880378	rs11613333	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	12q24.22	MIR4472-2	rs11613333-C	NR	2E-7		1.33	[1.20-1.48]	Affymetrix [9737707] (imputed)	N
1476	chr12	116896674	116896675	rs7299679	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	12q24.22	MIR4472-2, RP11-148B3.1	rs7299679-A	0.11	7E-7		1.5734	[NR]	Illumina [421909] (imputed)	N
1477	chr12	116919367	116919368	rs116517707	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		12q24.22	intergenic	rs116517707-?	NR	1E-7	(AA)	0.147	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1477	chr12	116966508	116966509	rs10850658	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	12q24.22		rs10850658-A	0.67	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1477	chr12	116967669	116967670	rs11068059	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	12q24.22	MAP1LC3B2	rs11068059-C	0.3595	2E-10		1.052	NR	Affymetrix [9154080] (imputed)	N
1477	chr12	117002657	117002658	rs2089222	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	12q24.22	KRTHB5	rs2089222-A	0.03	8E-8		2.26	[1.60-3.0]	Affymetrix [307944]	N
1478	chr12	117140688	117140689	rs10850703	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	12q24.22	intergenic	rs10850703-A	NR	8E-6		4.472	z score increase	Illumina [5060354] (imputed)	N
1478	chr12	117154261	117154262	rs2279695	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q24.22	C12orf49, MAP1LC3B2, RNFT2	rs2279695-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1478	chr12	117155471	117155472	rs56169403	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	12q24.22	NR	rs56169403-?	NR	1E-8	(Blautia_stercoris)	0.186999	[0.13-0.25] unit increase	Illumina [5293637] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.22	C12orf49	rs10507274-T	0.936097	5E-15		0.0314236	[0.024-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q24.22		rs10507274-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.22	C12orf49	rs10507274-T	0.9391	2E-8		0.0229	[0.015-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	12q24.22	NR	rs10507274-C	NR	8E-9		0.02804	[0.019-0.038] unit increase	Affymetrix [10847151] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.22	C12orf49	rs10507274-T	0.0615099	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
1478	chr12	117160975	117160976	rs10507274	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	12q24.22	C12orf49	rs10507274-T	0.93849	8E-10		6.155	z score decrease	Illumina [18485882] (imputed)	N
1478	chr12	117171668	117171669	rs2101869	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	12q24.22	C12orf49	rs2101869-C	0.17	3E-6		1.28	[0.75-1.81] unit decrease	Illumina [6380737] (imputed)	N
1478	chr12	117172372	117172373	rs11829086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.22		rs11829086-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1479	chr12	117199413	117199414	rs12322695	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.22	RNFT2	rs12322695-A	0.0090	7E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1479	chr12	117211018	117211019	rs60500557	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12q24.22		rs60500557-?	NR	3E-6		0.32	[0.18-0.46] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1479	chr12	117235726	117235727	rs4767454	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs4767454-?	NR	2E-9	(right hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117249178	117249178	rs35453575	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs35453575-?	NR	4E-8	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117251162	117251163	rs17501002	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs17501002-?	NR	3E-10	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117251162	117251163	rs17501002	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs17501002-?	NR	1E-10	(right hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117259275	117259276	rs10850722	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs10850722-?	NR	1E-10	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117283026	117283027	rs143841382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs143841382-G	0.01045	2E-8	(CLIC1)	0.1944	NR unit increase	Illumina [1671387] (imputed)	N
1479	chr12	117283026	117283027	rs143841382	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs143841382-G	0.01045	1E-8	(CNN3)	0.01853	NR unit increase	Illumina [1671387] (imputed)	N
1479	chr12	117287111	117287112	rs73220476	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs73220476-?	NR	8E-16	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117287111	117287112	rs73220476	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs73220476-?	NR	3E-16	(right hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117291590	117291591	rs903771	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs903771-?	NR	2E-8	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117295332	117295333	rs17429217	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	12q24.22	HRK, RNFT2	rs17429217-?	NR	3E-6		2.436	unit increase	Illumina [2543888] (imputed)	N
1479	chr12	117297443	117297443	rs576660328	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs576660328-?	NR	2E-10	(left hippocampus)			NR [9227495] (imputed)	N
1479	chr12	117309439	117309440	rs188402627	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs188402627-?	NR	2E-9	(right entorhinal)			NR [9227495] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	12q24.22	COL3A1, COL5A2, WDR75	rs146607495-?		9E-26				NR [7428630] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	12q24.22	ANKRD32, MCTP1	rs146607495-?		4E-39				NR [7428630] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	12q24.22	ADAMTS9	rs146607495-?		1E-25				NR [7428630] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs146607495-?		4E-32				NR [7428630] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs146607495-?	NR	7E-26	(left hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs146607495-?	NR	4E-27	(right hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117319201	117319202	rs146607495	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs146607495-?	NR	3E-9	(left entorhinal)			NR [9227495] (imputed)	N
1480	chr12	117320937	117320938	rs7315280	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs7315280-?	NR	4E-8	(right amygdala)			NR [9227495] (imputed)	N
1480	chr12	117321661	117321662	rs7137149	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	12q24.22		rs7137149-?	NR	2E-11				NR [9705931] (imputed)	N
1480	chr12	117321661	117321662	rs7137149	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Presubiculum volume	21,297 European ancestry individuals	NA	12q24.22	HRK	rs7137149-C	NR	1E-11		6.78	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	12q24.22	NR	rs77956314-T	NR	2E-21		9.53	NR Z score decrease	NR [9145464] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs77956314-C	NR	2E-35		123.31	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Subiculum volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8	rs77956314-C	NR	1E-17		12.96	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs77956314-C	NR	2E-19		20.52	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA4 volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs77956314-C	NR	2E-24		9.26	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA3 volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8	rs77956314-C	NR	2E-15		7.79	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA1 volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs77956314-C	NR	7E-28		24.08	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	HATA volume	21,297 European ancestry individuals	NA	12q24.22	HRK, FBXW8	rs77956314-C	NR	4E-13		2.04	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume	21,297 European ancestry individuals	NA	12q24.22	RNFT2, HRK, FBXW8, TESC	rs77956314-C	NR	2E-25		19.27	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume	21,297 European ancestry individuals	NA	12q24.22	HRK, FBXW8, TESC, RNFT2	rs77956314-C	NR	9E-26		11.01	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	28098162	Hibar DP	2017-01-18	Nat Commun	Novel genetic loci associated with hippocampal volume.	Hippocampal volume	26,814 European ancestry individuals	up to 3,863 European ancestry individuals, up to 562 African American individuals, up to 886 Asian ancestry individuals, up to 1,411 Mexican American individuals	12q24.22	HRK	rs77956314-T	0.916	2E-25	(EA)	10.418	[NR] z score decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1480	chr12	117323366	117323367	rs77956314	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	12q24.22	HRK	rs77956314-T	0.91	3E-15	(Hippocampus, EA)	55.18	[41.48-68.88] mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117326853	117326854	rs4767469	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs4767469-?	NR	3E-8	(right hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117327591	117327592	rs7294919	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	12q24.22	HRK	rs7294919-?	NR	7E-10	(Hippocampus, EA)	48.84	[33.34-64.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117327591	117327592	rs7294919	22504421	Bis JC	2012-04-15	Nat Genet	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	12q24.22	HRK	rs7294919-T	0.91	3E-11		107.8	[76.05-139.55] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1480	chr12	117327591	117327592	rs7294919	22504417	Stein JL	2012-04-15	Nat Genet	Identification of common variants associated with human hippocampal and intracranial volumes.	Brain structure	2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls	599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls	12q24.22	HRK, FBXW8	rs7294919-C	0.099	7E-16	(Mean bilateral hippocampal volume)	47.58	[36.04-59.12] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr12	117337100	117337101	rs12320925	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs12320925-?	NR	3E-17	(left hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117337100	117337101	rs12320925	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs12320925-?	NR	2E-19	(right hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117337102	117337103	rs113844630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q24.22		rs113844630-C	NR	3E-11		0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1480	chr12	117337102	117337103	rs113844630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.22		rs113844630-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1480	chr12	117337236	117337237	rs113315762	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs113315762-C	0.113851	2E-11				Affymetrix, Illumina [19872809] (imputed)	N
1480	chr12	117347172	117347173	rs11837918	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs11837918-?	NR	2E-15	(right hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117347172	117347173	rs11837918	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs11837918-?	NR	1E-11	(left hippocampus)			NR [9227495] (imputed)	N
1480	chr12	117347884	117347885	rs7302127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.22		rs7302127-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1480	chr12	117348523	117348524	rs115599170	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs115599170-A	0.0122	5E-9	(GARS)	0.04081	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117348523	117348524	rs115599170	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs115599170-A	0.0122	4E-10	(CNN3)	0.01873	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117348523	117348524	rs115599170	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs115599170-A	0.0122	3E-8	(CLIC1)	0.1795	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117349474	117349475	rs12823620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.22		rs12823620-?	NR	9E-30				NR [~ 8900000] (imputed)	N
1480	chr12	117366530	117366531	rs16947122	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or rheumatoid arthritis	741 European ancestry marginal zone lymphoma cases, 3,921 European ancestry rheumatoid arthritis cases, 10,070 European ancestry controls	NA	12q24.22	FBXW8	rs16947122-C	NR	5E-9		1.8634		Illumina [~ 600000] (imputed)	N
1480	chr12	117378944	117378947	rs1394792626	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs1394792626-T	0.01742	2E-9	(TAGLN2)	0.3424	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117428839	117428840	rs117956568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs117956568-A	0.0122	5E-9	(GARS)	0.04081	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117428839	117428840	rs117956568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs117956568-A	0.0122	4E-10	(CNN3)	0.01873	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr12	117428839	117428840	rs117956568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs117956568-A	0.0122	3E-8	(CLIC1)	0.1795	NR unit increase	Illumina [1671387] (imputed)	N
1481	chr12	117463769	117463770	rs117692586	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs117692586-?	NR	4E-12	(right hippocampus)			NR [9227495] (imputed)	N
1481	chr12	117463769	117463770	rs117692586	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs117692586-?	NR	4E-10	(left hippocampus)			NR [9227495] (imputed)	N
1481	chr12	117478767	117478770	rs34344826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.22	TESC	rs34344826-T	0.329146	5E-26		0.02477372	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1481	chr12	117478767	117478770	rs34344826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q24.22	TESC	rs34344826-T	0.3279	5E-9		0.02249698	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1481	chr12	117478978	117478979	rs58470318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs58470318-G	0.6614	7E-28				Affymetrix, Illumina [17210439] (imputed)	N
1481	chr12	117480223	117480224	rs2062528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.22	NR	rs2062528-C	0.667688	8E-30		0.022728	[0.019-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1481	chr12	117481260	117481260	rs112483974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.22	TESC	rs112483974-ATTTGT	0.329102	3E-16		0.019512393	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1481	chr12	117484061	117484062	rs7953553	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	12q24.22	TESC	rs7953553-G	0.6558	9E-10		0.4299	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1481	chr12	117491823	117491824	rs7972416	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	12q24.22	TESC	rs7972416-A	0.66	2E-11		0.45	[0.31-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1481	chr12	117498824	117498825	rs7964668	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.22		rs7964668-G	0.35	1E-9		6.08	z score increase	Affymetrix [9061022] (imputed)	N
1481	chr12	117498824	117498825	rs7964668	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.22	NR	rs7964668-G	0.3334	4E-9				NR [9056863] (imputed)	N
1481	chr12	117505300	117505301	rs7305948	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.22	TESC	rs7305948-T	0.1459	5E-20		0.0247	[0.019-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1481	chr12	117510551	117510552	rs11068315	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	12q24.22	NR	rs11068315-A	0.8	2E-6		2.06	[1.53-2.77]	Illumina [714494]	N
1481	chr12	117516921	117516922	rs78795651	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs78795651-?	NR	4E-8	(left hippocampus)			NR [9227495] (imputed)	N
1481	chr12	117516921	117516922	rs78795651	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.22	NR	rs78795651-?	NR	1E-8	(right hippocampus)			NR [9227495] (imputed)	N
1481	chr12	117522916	117522917	rs73405293	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q24.22	NR	rs73405293-G	0.166998	1E-8		0.053416945	[0.035-0.072] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1481	chr12	117522916	117522917	rs73405293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.22		rs73405293-A	0.1516	7E-9		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1481	chr12	117525234	117525235	rs2173650	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	12q24.22	NR	rs2173650-?		5E-9		0.017845	[0.012-0.024] unit increase	Affymetrix [19400418] (imputed)	N
1481	chr12	117540654	117540655	rs11068337	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	12q24.22	RP11-103B5.2	rs11068337-G	0.14	3E-7		0.0303	[0.019-0.042] unit decrease	Illumina [6380737] (imputed)	N
1482	chr12	117580541	117580542	rs73206033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.22		rs73206033-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1482	chr12	117580712	117580713	rs3741472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.22	NR	rs3741472-T	0.430808	1E-12		0.013322	[0.0096-0.017] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1482	chr12	117580712	117580713	rs3741472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q24.22	NR	rs3741472-T	0.430695	5E-18		0.016258	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1482	chr12	117588433	117588434	rs78968605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.22	FBXO21	rs78968605-T	0.432868	4E-12		0.0154721	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1482	chr12	117588433	117588434	rs78968605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.22	FBXO21	rs78968605-T	0.432884	2E-12		0.015782721	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1482	chr12	117589168	117589169	rs12322862	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.22	NR	rs12322862-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1482	chr12	117589168	117589169	rs12322862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.22		rs12322862-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1482	chr12	117591507	117591508	rs11068372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs11068372-G	0.247984	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
1482	chr12	117596787	117596788	rs10850777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs10850777-A	0.427596	6E-17				Affymetrix, Illumina [24653286] (imputed)	N
1482	chr12	117596787	117596788	rs10850777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.22	NR	rs10850777-A	0.427571	6E-18				Affymetrix, Illumina [24558453] (imputed)	N
1482	chr12	117596787	117596788	rs10850777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.22	NA	rs10850777-A	0.4388	3E-10		0.0108	[0.0075-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1482	chr12	117599348	117599349	rs6490117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.22	NR	rs6490117-G	0.45326	2E-16		0.015318	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1482	chr12	117599348	117599349	rs6490117	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q24.22	NA	rs6490117-C	0.5342	7E-10		0.0106	[0.0073-0.0139] unit decrease	NR [~ 27400000] (imputed)	N
1482	chr12	117602504	117602505	rs7313745	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.22	FBXO21	rs7313745-A		1E-11		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1482	chr12	117614775	117614776	rs10712360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.22		rs10712360-T	NR	6E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1482	chr12	117621274	117621275	rs139382189	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	12q24.22		rs139382189-C	0.07275	3E-7		1.565	[1.318-1.86]	Affymetrix [7975321] (imputed)	N
1482	chr12	117631860	117631861	rs10850799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.22		rs10850799-C	NR	7E-10		0.0101	[0.007-0.0132] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	12q24.22	NOS1	rs3741475-G	0.2137	4E-11		0.018297596	[0.012-0.025] unit decrease	NR [9417325] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	12q24.22	NOS1	rs3741475-G	0.2137	2E-14		0.021359224	[0.015-0.028] unit decrease	NR [9417325] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	12q24.22	NR	rs3741475-A	0.1944	4E-10		0.01194	[0.0082-0.0157] unit increase	NR [8968716] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	12q24.22	NOS1	rs3741475-G	NR	2E-8		0.009824	[0.0064-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q24.22		rs3741475-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.22	NR	rs3741475-A	NR	2E-10		6.37	z score increase	Affymetrix [10847151] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.22	FBXO21	rs3741475-A	0.200387	3E-9		5.91	z score increase	NR [10847151] (imputed)	N
1482	chr12	117669913	117669914	rs3741475	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	12q24.22	NOS1	rs3741475-A	0.20039	8E-11		6.498	z score increase	Illumina [18485882] (imputed)	N
1482	chr12	117672338	117672339	rs1875140	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	12q24.22	NR	rs1875140-?		7E-9				NR [520857]	N
1482	chr12	117672338	117672339	rs1875140	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	12q24.22	NR	rs1875140-C	0.2051	2E-8		0.0151	[0.0098-0.0204] unit increase	Illumina [NR] (imputed)	N
1482	chr12	117673015	117673016	rs4766836	31707593	Kulminski AM	2019-11-09	Geroscience	Polygenic risk score for disability and insights into disability-related molecular mechanisms.	Disability (impaired activities of daily living)	7,544 European ancestry cases, 4,619 European ancestry controls	5,006 European ancestry cases, 6,899 European ancestry controls	12q24.22	NOS1	rs4766836-C	0.099	3E-6		0.169	[0.098-0.24] unit increase	Illumina [NR]	N
1482	chr12	117674128	117674129	rs10774909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q24.22	NR	rs10774909-G	0.203112737739339	5E-16		0.009250518	[0.007-0.0115] unit increase	NR [NR]	N
1482	chr12	117674128	117674129	rs10774909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q24.22	NR	rs10774909-G	0.203112737739339	8E-16		0.011294996	[0.0085-0.014] unit increase	NR [NR]	N
1482	chr12	117674128	117674129	rs10774909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q24.22	NR	rs10774909-G	0.203112737739339	5E-16		0.01471432	[0.011-0.018] unit increase	NR [NR]	N
1482	chr12	117674128	117674129	rs10774909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	12q24.22	NR	rs10774909-G	0.203112737739339	2E-15		0.012004935	[0.009-0.015] unit increase	NR [NR]	N
1482	chr12	117674128	117674129	rs10774909	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q24.22	NR	rs10774909-G	0.203112737739339	5E-16		0.009398089	[0.0071-0.0117] unit increase	NR [NR]	N
1482	chr12	117676278	117676279	rs2893707	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.22		rs2893707-?	NR	4E-9				NR [NR]	N
1482	chr12	117676278	117676279	rs2893707	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.22		rs2893707-?	NR	3E-8				NR [NR]	N
1482	chr12	117676278	117676279	rs2893707	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.22		rs2893707-?	NR	4E-8				NR [NR]	N
1483	chr12	117708610	117708611	rs28607014	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.22	NR	rs28607014-?	NR	5E-8		1.051381	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1483	chr12	117708610	117708611	rs28607014	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.22	NOS1	rs28607014-C	NR	1E-7		1.0537407	[1.03-1.07]	Illumina [6627481] (imputed)	N
1483	chr12	117708610	117708611	rs28607014	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.22	NOS1	rs28607014-C	NR	1E-6	(EA)	1.056859	[1.03-1.08]	Illumina [6627481] (imputed)	N
1483	chr12	117708610	117708611	rs28607014	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.22	NOS1	rs28607014-C	NR	2E-8		1.0570824	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1483	chr12	117715619	117715620	rs2293052	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.22	NR	rs2293052-G	NR	7E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1483	chr12	117723612	117723613	rs884847	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.22	NR	rs884847-G	0.8026	4E-9		0.0293	[0.02-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1483	chr12	117747589	117747590	rs73208120	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	12q24.22	NR	rs73208120-G	0.084	8E-7	(EA)	1.1111112	[1.06-1.16]	Affymetrix, Illumina [12931465] (imputed)	N
1483	chr12	117747589	117747590	rs73208120	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	12q24.22	NOS1	rs73208120-G	0.11	3E-8	(EA)	1.16	[1.11-1.23]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1483	chr12	117747589	117747590	rs73208120	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	12q24.22	NOS1	rs73208120-G	0.11	3E-8		1.16	[1.11-1.23]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1483	chr12	117751424	117751425	rs478597	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	12q24.22	intergenic	rs478597-?	NR	8E-6	(binary)			Perlegen [429981]	N
1483	chr12	117759314	117759315	rs76830467	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Baseline cortisol levels in response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	12q24.22	NOS1	rs76830467-?	NR	3E-7				Illumina [430492]	N
1483	chr12	117763308	117763309	rs55990915	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	12q24.22	NOS1	rs55990915-A	0.131	2E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1483	chr12	117794660	117794661	rs34406980	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs34406980-G	0.0122	2E-8	(PLD3)	0.02642	NR unit increase	Illumina [1671387] (imputed)	N
1483	chr12	117813980	117813981	rs492623	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.22	NR	rs492623-?		7E-6				Illumina [4322238] (imputed)	N
1484	chr12	117933499	117933500	rs137949660	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	12q24.22	NR	rs137949660-?	NR	1E-6	(Latino)	0.9133	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1484	chr12	117938518	117938519	rs1604079	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	12q24.22		rs1604079-T	0.40563838338181	4E-7		0.0220059	[0.013-0.031] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1484	chr12	117942075	117942076	rs11615756	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	12q24.22	KSR2	rs11615756-T		2E-87		0.0171	[0.015-0.019] unit increase	Affymetrix [13304133] (imputed)	N
1484	chr12	117951149	117951150	rs4767550	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	12q24.22	NR	rs4767550-G	NR	1E-10		0.822	unit increase	Affymetrix [14661600] (imputed)	N
1484	chr12	117951149	117951150	rs4767550	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	12q24.22		rs4767550-G	0.4128	3E-9		0.01492	[0.01-0.02] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1485	chr12	117967071	117967072	rs2650167	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		KSR2	rs2650167-A	0.48	6E-6		0.09	[0.05-0.13] unit decrease	Illumina [1679420] (imputed)	N
1485	chr12	117977549	117977550	rs56214831	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q24.22	KSR2	rs56214831-T	0.0082	1E-8		0.057	[0.037-0.077] unit increase	Illumina [246328]	N
1485	chr12	117994347	117994348	rs871257	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	12q24.22	NR	rs871257-?	NR	8E-6		0.00427	[0.0024-0.0061] unit increase	Affymetrix [9658292] (imputed)	N
1485	chr12	118008191	118008192	rs146828618	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	12q24.22	NR	rs146828618-C	NR	1E-6		0.5512	[0.33-0.78] SD units increase	NR [10700000] (imputed)	N
1485	chr12	118062073	118062074	rs144850704	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q24.22	NR	rs144850704-?	NR	1E-6	(AA)	0.7013	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1485	chr12	118095244	118095245	rs142960195	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.22	NR	rs142960195-T	0.02265	2E-8	(IGHM)	0.1811	NR unit increase	Illumina [1671387] (imputed)	N
1486	chr12	118106193	118106194	rs10431397	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	12q24.22	KSR2	rs10431397-A	0.012	7E-6		1.73	[NR]	Illumina [580699]	N
1486	chr12	118112385	118112386	rs642846	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	12q24.22	KSR2	rs642846-?	NR	2E-6		1.94		Illumina [6778521] (imputed)	N
1486	chr12	118146741	118146742	rs895470	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	12q24.23	NR	rs895470-?		4E-6	(genus_Lachnobacterium)	0.636799	[0.35-0.92] unit increase	Affymetrix [211319]	N
1486	chr12	118169908	118169909	rs4304868	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.23	KSR2	rs4304868-A	0.16	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1486	chr12	118176063	118176064	rs4767602	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	12q24.23	KSR2	rs4767602-C	0.106	7E-6	(EA)	0.154	[0.087-0.221] unit decrease	Illumina [NR] (imputed)	N
1486	chr12	118207578	118207579	rs61937726	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	12q24.23		rs61937726-?	NR	7E-9		2.0721	[1.37-2.77] unit increase	Affymetrix [NR] (imputed)	N
1487	chr12	118232093	118232094	rs111173978	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	12q24.23	NR	rs111173978-T		3E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
1487	chr12	118236576	118236577	rs4766878	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.23	KSR2	rs4766878-?		8E-14				Affymetrix, Illumina [NR] (imputed)	N
1487	chr12	118257213	118257214	rs183032784	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.23	KSR2	rs183032784-A	1.0	6E-9	(AA)	0.471	unit increase	Illumina [NR] (imputed)	N
1487	chr12	118257213	118257214	rs183032784	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.23	KSR2	rs183032784-A	1.0	1E-6	(AA)	1.96	NR unit increase	Illumina [NR] (imputed)	N
1487	chr12	118265440	118265441	rs11830157	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	12q24.23	KSR2	rs11830157-G	0.36	2E-9	(recessive model)	1.12	[1.08-1.16]	Affymetrix, Illumina [8600000] (imputed)	N
1487	chr12	118268464	118268465	rs874560	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.23	RFC5	rs874560-?	NR	7E-6	(xanthine)	0.17369969	[0.098-0.249] unit increase	Affymetrix [at least 2500000] (imputed)	N
1487	chr12	118272870	118272871	rs2723279	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	12q24.23	intergenic	rs2723279-?	0.69	5E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1487	chr12	118285072	118285073	rs16948000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.23	RFC5	rs16948000-?	NR	3E-6	(TAG 60:12)	0.24391936	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1487	chr12	118295923	118295924	rs10507285	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	12q24.23	KSR2	rs10507285-?		8E-6		0.075	[0.042-0.108] unit increase	Affymetrix [418365]	N
1487	chr12	118299480	118299481	rs184614511	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q24.23	KSR2	rs184614511-T	0.005	6E-6	(liability model)	0.64	[0.37-0.91] unit increase	NR [19725427] (imputed)	N
1487	chr12	118311742	118311743	rs4767631	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	12q24.23	KSR2	rs4767631-A	0.31	6E-7	(LDL cholesterol)	0.12	[0.11-0.23] mmol/L decrease	Illumina [316730]	N
1487	chr12	118320834	118320835	rs76508460	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	12q24.23	NR	rs76508460-T	0.057	3E-6		0.59	[0.34-0.84] unit increase	Illumina [9469131] (imputed)	N
1487	chr12	118329097	118329098	rs61640416	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.23	NR	rs61640416-A	0.162763	4E-9		0.0244699	[0.016-0.033] unit decrease	NR [19129689] (imputed)	N
1487	chr12	118349035	118349036	rs150458590	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q24.23	KSR2	rs150458590-T	0.0064	5E-6		1.0274	[0.58-1.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1487	chr12	118353870	118353871	rs10444502	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	12q24.23	KSR2	rs10444502-C	0.28	6E-6	(total cholesterol)	0.17	[0.10-0.24] mmol/L decrease	Illumina [316730]	N
1488	chr12	118359413	118359414	rs61945387	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	12q24.23	KSR2	rs61945387-?	NR	2E-7	(EA)			Illumina [4404269] (imputed)	N
1488	chr12	118359413	118359414	rs61945387	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q24.23	KSR2	rs61945387-G	0.06276	3E-7	(EA)			Illumina [4404269] (imputed)	N
1488	chr12	118375485	118375486	rs7973260	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q24.23	NR	rs7973260-A	0.195	2E-7		0.022945262	[0.014-0.032] unit increase	Affymetrix [up to 6544775] (imputed)	N
1488	chr12	118375485	118375486	rs7973260	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	12q24.23	KSR2	rs7973260-A	NR	2E-8		5.6011147	[NR] z score increase	Affymetrix [up to 6544862] (imputed)	N
1488	chr12	118383132	118383133	rs7134419	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	12q24.23	NR	rs7134419-C	0.8109	4E-8		0.0154	[0.0099-0.0209] unit decrease	Illumina [NR] (imputed)	N
1488	chr12	118385787	118385788	rs4767645	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.23	NR	rs4767645-G	0.5386	6E-10		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1488	chr12	118391599	118391600	rs12424627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.23		rs12424627-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1488	chr12	118399490	118399491	rs7305424	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q24.23	KSR2	rs7305424-A	0.657832	2E-12		0.0103917	[0.0075-0.0133] unit decrease	Affymetrix [12370749]	N
1488	chr12	118400855	118400856	rs111246699	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q24.23	KSR2	rs111246699-A	0.257	2E-15		1.06	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1488	chr12	118401848	118401849	rs116861488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q24.23		rs116861488-A	NR	1E-10		0.0606	[0.042-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1488	chr12	118405171	118405172	rs9805009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.23		rs9805009-G	NR	3E-12		0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1488	chr12	118405171	118405172	rs9805009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.23		rs9805009-G	NR	1E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1488	chr12	118405171	118405172	rs9805009	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.23	NR	rs9805009-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1488	chr12	118405171	118405172	rs9805009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.23		rs9805009-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1488	chr12	118406695	118406696	rs79310463	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	12q24.23	NR	rs79310463-C	0.7366	2E-8		0.0574	[0.037-0.077] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1488	chr12	118406695	118406696	rs79310463	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.23	NR	rs79310463-C	0.8257	7E-21		0.05	[0.04-0.06] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1488	chr12	118406695	118406696	rs79310463	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q24.23		rs79310463-T	0.264009786	1E-8		1.0558721	[1.036349858-1.075762081]	Illumina [8919992] (imputed)	N
1488	chr12	118406695	118406696	rs79310463	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	12q24.23	KSR2	rs79310463-T	0.26	2E-8		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1488	chr12	118409362	118409363	rs7963783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q24.23	NA	rs7963783-T	0.7132	7E-10		0.0117	[0.008-0.0154] unit increase	NR [~ 27400000] (imputed)	N
1488	chr12	118412372	118412373	rs34965774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.23		rs34965774-A	0.254256366	4E-13		0.07705403	[0.056-0.098] unit increase	Illumina [13429769] (imputed)	N
1488	chr12	118412372	118412373	rs34965774	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.23	NR	rs34965774-G	0.8623	1E-14		0.0521	[0.039-0.065] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1488	chr12	118412372	118412373	rs34965774	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.23	KSR2	rs34965774-A	0.1438	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1488	chr12	118414696	118414697	rs7968390	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.23	NA	rs7968390-A	0.6844	2E-10		0.0116	[0.0081-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1488	chr12	118414925	118414926	rs7132351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.23		rs7132351-A	NR	2E-15		0.063	[0.048-0.078] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1488	chr12	118428975	118428976	rs7139263	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.23	NR	rs7139263-A	0.51	1E-7		1.083	[1.05-1.11]	Illumina [11270530] (imputed)	N
1488	chr12	118441993	118441994	rs76228983	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q24.23	NR	rs76228983-?	NR	3E-6		5410.8696	NR unit decrease	Illumina [2379855]	N
1488	chr12	118443365	118443366	rs79114231	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	12q24.23		rs79114231-A	NR	7E-6		1.8734	[1.08-2.67] unit increase	Illumina [NR] (imputed)	N
1488	chr12	118443869	118443870	rs146238395	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	12q24.23	NR	rs146238395-?	NR	3E-6	(Native Hawaiian)	1.1114	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1488	chr12	118454668	118454669	rs5745796	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	RFC5	rs5745796-A	0.032	5E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1488	chr12	118461573	118461574	rs9739560	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	12q24.23	RFC5	rs9739560-A	0.2551	8E-7	(weight)	0.8238	NR unit increase	Affymetrix [305158]	N
1489	chr12	118489635	118489636	rs12578639	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.23	KSR2	rs12578639-A	0.8278	2E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1489	chr12	118492487	118492489	rs566867381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.23	WSB2	rs566867381-A	0.0557180000000001	4E-10		0.030291138	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1489	chr12	118495742	118495743	rs11068795	33393196	Soliai M	2021-01-03	Int Forum Allergy Rhinol	Two-stage genome-wide association study of chronic rhinosinusitis and disease subphenotypes highlights mucosal immunity contributing to risk.	Chronic rhinosinusitis	483 European ancestry cases, 2,057 European ancestry controls	NA	12q24.23	WSB2, RFC5, VSIG10	rs11068795-C	0.238	2E-6		1.737	[NR]	Illumina [4528849] (imputed)	N
1489	chr12	118524425	118524426	rs7957470	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	12q24.23	VSIG10	rs7957470-G	0.27	5E-7	(right leg)	0.29	[0.17-0.41] g/cm2 decrease	Illumina [> 1100000]	N
1489	chr12	118524425	118524426	rs7957470	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	VSIG10	rs7957470-G	0.259	8E-6	(Arm span )	0.02	[NR] cm increase	Illumina [899892]	N
1489	chr12	118527856	118527857	rs34898170	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	12q24.23	NR	rs34898170-G	0.1261	5E-6		0.2135	[0.12-0.3] unit increase	Illumina [10677593] (imputed)	N
1489	chr12	118584884	118584885	rs76597567	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.23	PEBP1	rs76597567-A	0.98234375	4E-111	(PEBP1, 4276_10_2)	1.9713122	[1.81-2.14] unit increase	Illumina [> 1000000] (imputed)	N
1489	chr12	118585697	118585698	rs7974375	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	12q24.23	NR	rs7974375-T	0.166310529363864	2E-8		0.009295931	[0.006-0.0125] unit increase	NR [NR]	N
1489	chr12	118589861	118589862	rs795484	24909733	Cook-Sather SD	2014-06-05	Pain	TAOK3, a novel genome-wide association study locus associated with morphine requirement and postoperative pain in a retrospective pediatric day surgery population.	Morphine dose requirement in tonsillectomy and adenoidectomy surgery	277 European ancestry children, 241 African American children	75 European ancestry children, 70 African American children	12q24.23	TAOK3, VSIG10, PEBP1, SUDS3	rs795484-A	0.34	3E-7	(EA)	16.1	[10.0-21.1] unit increase	Illumina [509904]	N
1489	chr12	118601855	118601856	rs61943529	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q24.23	TAOK3	rs61943529-A	0.032	2E-6		0.164	NR unit decrease	Illumina [NR] (imputed)	N
1490	chr12	118636986	118636987	rs61945174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q24.23		rs61945174-T	NR	6E-9		0.3048	[0.2-0.41] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1490	chr12	118636986	118636987	rs61945174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	12q24.23		rs61945174-T	0.001366	6E-9		0.304823	[0.2-0.41] unit increase	Illumina [13477767] (imputed)	N
1490	chr12	118636986	118636987	rs61945174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q24.23		rs61945174-T	NR	2E-9		0.3183	[0.21-0.42] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1490	chr12	118636986	118636987	rs61945174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	12q24.23		rs61945174-T	0.001366	2E-9		0.318274	[0.21-0.42] unit increase	Illumina [13477770] (imputed)	N
1490	chr12	118646660	118646661	rs650466	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q24.23	TAOK3	rs650466-T	0.028	5E-6		0.166	NR unit decrease	Illumina [NR] (imputed)	N
1490	chr12	118649953	118649954	rs2280711	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.23	NR	rs2280711-T	0.160452	3E-10		6.29	z score increase	NR [10847151] (imputed)	N
1490	chr12	118663766	118663767	rs353884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.23		rs353884-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1490	chr12	118682750	118682751	rs428073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs428073-C	0.309524	7E-26				Affymetrix, Illumina [22063850] (imputed)	N
1490	chr12	118682750	118682751	rs428073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.23	NR	rs428073-C	0.311426	2E-29		0.022834	[0.019-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1490	chr12	118682750	118682751	rs428073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12q24.23	TAOK3	rs428073-T	0.6884	3E-13		0.02778707	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1490	chr12	118682750	118682751	rs428073	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	12q24.23	TAOK3	rs428073-T	0.69	8E-7		1.18	[1.11-1.26]	Illumina [~ 2100000] (imputed)	N
1490	chr12	118685724	118685725	rs12296288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PEBP1	5,351 Icelandic ancestry individuals	NA	12q24.23		rs12296288-A	0.02564	1E-307		1.96297	[1.86-2.07] unit decrease	Illumina [7506463] (imputed)	N
1490	chr12	118696270	118696271	rs353891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.23	TAOK3	rs353891-C	0.70326	6E-21		0.022789957	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1490	chr12	118702728	118702729	rs7963464	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs7963464-?	NR	4E-9				NR [NR]	N
1490	chr12	118710720	118710721	rs61945219	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs61945219-?	NR	8E-10				NR [NR]	N
1490	chr12	118710720	118710721	rs61945219	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs61945219-?	NR	2E-9				NR [NR]	N
1490	chr12	118711876	118711877	rs7314987	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	12q24.23	NR	rs7314987-T	0.132728373857085	1E-9		0.013703822	[0.0093-0.0181] unit increase	NR [NR]	N
1490	chr12	118711876	118711877	rs7314987	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q24.23	NR	rs7314987-T	0.132728373857085	2E-9		0.008617761	[0.0058-0.0114] unit increase	NR [NR]	N
1490	chr12	118722180	118722181	rs557285101	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q24.23	TAOK3	rs557285101-A	0.0023	5E-6		0.5844	[0.33-0.83] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1490	chr12	118734093	118734094	rs459547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q24.23		rs459547-A	NR	3E-20		0.0202	[0.016-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1491	chr12	118752902	118752903	rs11068906	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs11068906-?	NR	1E-8				NR [NR]	N
1491	chr12	118752902	118752903	rs11068906	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs11068906-?	NR	2E-9				NR [NR]	N
1491	chr12	118760638	118760639	rs189444164	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.23	intergenic	rs189444164-T	0.9924	4E-6		0.383	[0.22-0.55] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr12	118791119	118791120	rs11068917	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	12q24.23	TAOK3	rs11068917-C	0.2028	3E-7		0.014835155	[0.0083-0.0213] unit decrease	NR [9417325] (imputed)	N
1491	chr12	118791119	118791120	rs11068917	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	12q24.23	TAOK3	rs11068917-?	NR	2E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1491	chr12	118791119	118791120	rs11068917	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	12q24.23	NR	rs11068917-A	0.181230193232177	3E-10		0.007531199	[0.0052-0.0099] unit increase	NR [NR]	N
1491	chr12	118791440	118791441	rs673078	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	12q24.23	TAOK3, SUDS3	rs673078-?		2E-6	(M)	30.26	[17.42-43.1] unit decrease	Illumina [693128]	N
1491	chr12	118791440	118791441	rs673078	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	12q24.23	TAOK3	rs673078-?		5E-6	(SI+M)	0.08	[-0.0964-0.2564] unit decrease	Illumina [693128]	N
1491	chr12	118796084	118796085	rs6490177	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	12q24.23	NR	rs6490177-A	NR	1E-9		0.01863	NR unit increase	NR [7259579]	N
1491	chr12	118796084	118796085	rs6490177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	12q24.23		rs6490177-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1491	chr12	118796084	118796085	rs6490177	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.23	NR	rs6490177-A	NR	1E-9		6.046	z score increase	Affymetrix [10847151] (imputed)	N
1491	chr12	118796084	118796085	rs6490177	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	12q24.23	RFC5	rs6490177-A	0.183007	6E-11		6.54	z score increase	NR [10847151] (imputed)	N
1491	chr12	118830957	118830958	rs521048	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	12q24.23	NR	rs521048-G	0.7309	5E-7		0.0067	[0.0042-0.0092] unit increase	NR [7666894] (imputed)	N
1491	chr12	118840456	118840457	rs12316703	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	12q24.23	SUDS3	rs12316703-G	0.9171	4E-6		0.6574	[0.38-0.94] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr12	118873428	118873429	rs12579764	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	12q24.23	SUDS3, SRRM4	rs12579764-?		5E-6	(EA)	0.223	[0.13-0.32] unit decrease	Illumina [7205781] (imputed)	N
1491	chr12	118873428	118873429	rs12579764	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	12q24.23	SUDS3, SRRM4	rs12579764-?	NR	8E-6	(EA)	0.0787	[0.044-0.113] unit decrease	Illumina [7176022] (imputed)	N
1491	chr12	118876917	118876918	rs56080343	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	12q24.23	intergenic	rs56080343-T	0.81647	1E-9		6.086	z score decrease	Illumina [18485882] (imputed)	N
1491	chr12	118876917	118876918	rs56080343	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q24.23	NR	rs56080343-T	0.8	2E-7		0.022469256	[0.014-0.031] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1492	chr12	118893247	118893248	rs11613092	26049409	Hirano A	2015-06-05	Psychiatr Genet	A genome-wide association study of late-onset Alzheimer's disease in a Japanese population.	Alzheimer's disease (late onset)	489 Japanese ancestry APOE-?4 noncarrier cases, 6,463 Japanese ancestry APOE-?4 noncarrier controls, 323 Japanese ancestry APOE-?4 carrier cases, 1,484 Japanese ancestry APOE-?4 carrier controls, 4 Japanese ancestry cases, 45 Japanese ancestry controls	528 Japanese ancestry APOE-?4 noncarrier cases, 5,824 Japanese ancestry APOE-?4 noncarrier controls, 480 Japanese ancestry APOE-?4 carrier cases, 1,364 Japanese ancestry APOE-?4 carrier controls, 3 Japanese ancestry cases, 24 Japanese ancestry controls	12q24.23	intergenic	rs11613092-G	0.093	7E-6	(noncarrier)	1.64	[1.32-2.04]	Illumina [561143]	N
1492	chr12	118893247	118893248	rs11613092	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	12q24.23	SUDS3	rs11613092-T	0.08	6E-6	(PS levels)	8.16	[4.63-11.69] iu/ml increase	Illumina [472123]	N
1493	chr12	119130216	119130217	rs10851014	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Postherpetic neuralgia	89 Japanese ancestry cases, 282 Japanese ancestry controls	NA	12q24.23	NR	rs10851014-?	NR	6E-6				Illumina [445723]	N
1494	chr12	119163078	119163079	rs11069062	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	KIAA1853	rs11069062-A	0.124	3E-6	(Moderate activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1494	chr12	119171973	119171974	rs2730753	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	12q24.23	intergenic	rs2730753-G	0.33	7E-6		33.8	[19.1-48.5] unit increase	Illumina [6380737] (imputed)	N
1494	chr12	119200349	119200350	rs11069071	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	12q24.23	intergenic	rs11069071-T	NR	7E-7		1.31	[1.18-1.46]	Illumina [8625325] (imputed)	N
1495	chr12	119277294	119277295	rs12580740	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	12q24.23	NR	rs12580740-T	0.05708	2E-6		0.3095	[0.18-0.44] unit increase	Illumina [10677593] (imputed)	N
1495	chr12	119303194	119303195	rs1534618	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	12q24.23	SUDS3, SRRM4	rs1534618-?	NR	4E-6				Illumina [491617]	N
1495	chr12	119350867	119350868	rs4766921	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	12q24.23	KIAA1853	rs4766921-G	0.67	5E-6		1.18	[1.09-1.27]	Illumina [~ 2100000] (imputed)	N
1495	chr12	119387917	119387918	rs1997111	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	12q24.23	intergenic	rs1997111-T	NR	1E-8	(Controls)			Illumina [498205]	N
1495	chr12	119390524	119390525	rs10775009	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	12q24.23	RPL17P37, SRRM4	rs10775009-T	0.34	2E-9		0.51	[0.33-0.69] unit increase	Illumina [8248960] (imputed)	N
1495	chr12	119400355	119400356	rs146631243	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	12q24.23		rs146631243-G	NR	6E-7		0.5362	[0.33-0.75] increase	Illumina [6334277] (imputed)	N
1496	chr12	119414563	119414564	rs117438382	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	12q24.23	SRRM4	rs117438382-A	0.008953	4E-8		0.8872	[0.57-1.2] unit increase	Illumina [10677593] (imputed)	N
1496	chr12	119419602	119419603	rs1568923	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	12q24.23	SRRM4	rs1568923-?	NR	3E-12		1.0799136	[1.06-1.1]	Illumina [13729857] (imputed)	N
1497	chr12	119542750	119542751	rs192977447	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	12q24.23	SRRM4	rs192977447-A	NR	2E-7		1.53	[1.41-1.66]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1497	chr12	119560949	119560950	rs150007474	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	12q24.23		rs150007474-A	0.0173	6E-6		2.807	[1.799-4.382]	Affymetrix [7975321] (imputed)	N
1497	chr12	119560949	119560950	rs150007474	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	12q24.23		rs150007474-A	0.0173	9E-6		2.525	[1.676-3.805]	Affymetrix [7975321] (imputed)	N
1497	chr12	119619996	119619997	rs78852656	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	12q24.23	HSPB8	rs78852656-?	NR	4E-8				Affymetrix [5486770] (imputed)	N
1498	chr12	119673502	119673503	rs12146774	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	12q24.23	NR	rs12146774-T	NR	1E-6		1.97	[1.50-2.59]	Illumina [510856]	N
1498	chr12	119721035	119721036	rs12426547	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs12426547-?	NR	3E-8				NR [NR]	N
1498	chr12	119721035	119721036	rs12426547	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs12426547-?	NR	4E-8				NR [NR]	N
1498	chr12	119721035	119721036	rs12426547	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs12426547-?	NR	4E-8				NR [NR]	N
1498	chr12	119721035	119721036	rs12426547	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs12426547-?	NR	4E-8				NR [NR]	N
1498	chr12	119721035	119721036	rs12426547	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	12q24.23		rs12426547-?	NR	3E-8				NR [NR]	N
1499	chr12	119818508	119818509	rs11064768	18332876	Kirov G	2008-03-11	Mol Psychiatry	A genome-wide association study in 574 schizophrenia trios using DNA pooling.	Schizophrenia	574 European ancestry trios, 605 European ancestry controls	NA	12q24.23	CCDC60	rs11064768-A	0.91	1E-6				Illumina [~ 550000]	N
1499	chr12	119840131	119840132	rs4300442	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	12q24.23	CCDC60	rs4300442-?	NR	4E-6		1.09	[1.05-1.14]	Affymetrix, Illumina [39235000] (imputed)	N
1499	chr12	119848512	119848513	rs7303237	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.23	HSPB8	rs7303237-?	NR	9E-6	(TAG 54:6)	0.26835313	[0.15-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
1500	chr12	119958701	119958702	rs708886	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	12q24.23	CCDC60	rs708886-T	0.44	9E-7	(correcting APOE e4)	0.0471	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1500	chr12	119958701	119958702	rs708886	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	12q24.23	CCDC60	rs708886-T	0.12	8E-7		0.0504	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1500	chr12	119989645	119989646	rs7137869	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	12q24.23	CCDC60	rs7137869-?	NR	6E-7	(walking speed exam 7)			Affymetrix [70897]	N
1500	chr12	120008623	120008624	rs117204746	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	12q24.23		rs117204746-A	NR	5E-7		0.67828		Affymetrix, Illumina [62056310] (imputed)	N
1500	chr12	120017705	120017706	rs11064837	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.23	NR	rs11064837-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1500	chr12	120025889	120025890	rs796413798	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.23	NR	rs796413798-G	0.0122	1E-8	(FERMT2)	0.1084	NR unit increase	Illumina [1671387] (imputed)	N
1500	chr12	120039427	120039428	rs4767831	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	12q24.23	TMEM233	rs4767831-G	0.393	8E-9	(Acetic acid derivatives and related substances [M01AB])	1.56		Illumina [16500000] (imputed)	N
1500	chr12	120042049	120042050	rs142761815	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12q24.23	Intergenic	rs142761815-?		4E-6		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
1500	chr12	120042049	120042050	rs142761815	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	12q24.23	Intergenic	rs142761815-?		2E-6		2.73	[1.81-4.12]	Illumina [7645193] (imputed)	N
1500	chr12	120043594	120043595	rs17485664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs17485664-C	0.0617493	7E-10				Affymetrix, Illumina [23467995] (imputed)	N
1500	chr12	120051268	120051269	rs2893796	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	12q24.23	NR	rs2893796-?		8E-6	(IgA)	0.0716	[NR] unit increase	Illumina [NR]	N
1501	chr12	120083501	120083502	rs183252252	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	12q24.23	NR	rs183252252-G		7E-6		0.2443	[0.14-0.35] SD units decrease	NR [10700000] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q24.23		rs138621699-A	NR	4E-11		0.0291	[0.02-0.038] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q24.23		rs138621699-A	NR	1E-11		0.03	[0.021-0.039] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	12q24.23		rs138621699-A	NR	5E-8		0.0204	[0.013-0.028] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080057	2E-16		0.03373597	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080306	7E-11		0.027079811	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080079	2E-18		0.03605338	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080109	9E-10		0.025271213	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080078	2E-11		0.027567154	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109302	rs138621699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q24.23	PRKAB1	rs138621699-A	0.080115	5E-15		0.03231591	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1501	chr12	120109284	120109284	rs749140768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.23	NR	rs749140768-D	0.080347	3E-11		0.02482	[0.017-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1501	chr12	120141849	120141850	rs371848093	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	12q24.23	NR	rs371848093-?	NR	2E-6		19.805	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.0327476	3E-10		0.0255	[0.018-0.033] unit increase	Affymetrix [23037915] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	12q24.23	CIT, PRKAB1	rs11064881-G	0.926	1E-8		0.009	[0.006-0.012] unit decrease	NR [57525634] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.0716634	4E-17				Affymetrix, Illumina [24649327] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.073548	1E-19		0.032266	[0.025-0.039] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.071692	1E-17				Affymetrix, Illumina [23114412] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.073489	2E-20		0.034163	[0.027-0.041] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.0719351	6E-14				Affymetrix, Illumina [19905671] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q24.23	NR	rs11064881-A	0.073509	2E-16		0.032268	[0.025-0.04] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.23		rs11064881-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q24.23	PRKAB1	rs11064881-A	0.07342	2E-7	(EA)	1.1273501	[1.08-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1501	chr12	120146924	120146925	rs11064881	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	12q24.23	PRKAB1	rs11064881-A	0.07342	6E-8	(EA)	1.1044849	[1.07-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1501	chr12	120150195	120150196	rs804667	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	12q24.23	CIT	rs804667-T	0.2998	2E-9		0.015519196	[0.01-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1501	chr12	120162198	120162199	rs4767841	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	12q24.23	CIT	rs4767841-?	NR	9E-7		1.19	[1.00-1.42]	Illumina [9077347] (imputed)	N
1501	chr12	120186930	120186931	rs45670	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.23	MIR1178	rs45670-C	0.676161	4E-17		0.00444452	[0.0034-0.0055] unit decrease	Affymetrix [13995440] (imputed)	N
1501	chr12	120188559	120188561	rs1199470173	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.23	NR	rs1199470173-C	0.0122	8E-9	(FERMT2)	0.1074	NR unit increase	Illumina [1671387] (imputed)	N
1502	chr12	120200111	120200112	rs278142	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.23	NR	rs278142-?	NR	8E-7				Affymetrix [NR]	N
1502	chr12	120232645	120232646	rs203351	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.23	NR	rs203351-?	NR	2E-9				Affymetrix [NR]	N
1502	chr12	120245842	120245843	rs74653672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.23	NR	rs74653672-T	0.98305	6E-11		0.047827	[0.034-0.062] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1502	chr12	120263002	120263003	rs55707601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.23	NR	rs55707601-G	0.983368	9E-10				Affymetrix, Illumina [22063850] (imputed)	N
1502	chr12	120270637	120270638	rs17442937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.23		rs17442937-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1503	chr12	120381997	120381998	rs113257350	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.23	NR	rs113257350-C	0.977749	5E-10		0.0172861	[0.012-0.023] unit increase	Affymetrix [16582909] (imputed)	N
1503	chr12	120381997	120381998	rs113257350	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.23	NR	rs113257350-C	0.977749	1E-7		0.0165672	[0.01-0.023] unit increase	Affymetrix [16582965] (imputed)	N
1503	chr12	120430073	120430074	rs113116967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.23	NR	rs113116967-T	NR	3E-10		0.0336	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1504	chr12	120455763	120455764	rs11064994	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q24.23	CCDC64	rs11064994-?	0.05521	6E-6	(PAL6)			Illumina [475971]	N
1504	chr12	120483246	120483247	rs150832462	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.23	NR	rs150832462-C	0.956234	3E-8		0.0271108	[0.018-0.037] unit increase	NR [NR]	N
1504	chr12	120515772	120515773	rs75499226	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	12q24.23	NR	rs75499226-C	0.91	3E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [7369691] (imputed)	N
1504	chr12	120515772	120515773	rs75499226	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	12q24.23	NR	rs75499226-C	0.91	1E-8		0.02	[0.012-0.028] unit increase	NR [7369691] (imputed)	N
1504	chr12	120515772	120515773	rs75499226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.23		rs75499226-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1504	chr12	120517461	120517462	rs189416161	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.23	NR	rs189416161-C	0.01045	3E-13	(PEPD)	0.2248	NR unit increase	Illumina [1671387] (imputed)	N
1504	chr12	120520266	120520267	rs111570031	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.23	NR	rs111570031-G	0.967303	1E-10		0.0378378	[0.026-0.049] unit decrease	NR [NR]	N
1504	chr12	120538650	120538651	rs2239200	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.23	RAB35	rs2239200-T	0.915877	2E-9		0.0198994	[0.013-0.026] unit increase	NR [13737936] (imputed)	N
1504	chr12	120562973	120562974	rs11065028	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.23	GCN1L1	rs11065028-G	0.31	4E-6	(AST )	0.03	[NR] U/L increase	Illumina [899892]	N
1504	chr12	120564998	120564999	rs4767878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.23	NR	rs4767878-G	NR	8E-12		0.0513	[0.037-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1504	chr12	120564998	120564999	rs4767878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.23	NR	rs4767878-G	NR	5E-12		0.0518	[0.037-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1504	chr12	120571613	120571614	rs12426126	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.23	NR	rs12426126-T	0.885001	2E-19		0.0291139	[0.023-0.035] unit increase	NR [NR]	N
1504	chr12	120573315	120573316	rs555994863	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.23	GCN1	rs555994863-T	0.0191	4E-9		0.0409	[0.027-0.054] unit increase	Affymetrix [18391927] (imputed)	N
1505	chr12	120624084	120624085	rs12308065	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q24.23	GCN1L1	rs12308065-A	0.373043	1E-8		0.00828917	[0.0054-0.0111] unit decrease	Affymetrix [12370749]	N
1505	chr12	120635717	120635721	rs570610648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q24.23	RPLP0	rs570610648-T	0.0021	8E-6		0.4741	[0.27-0.68] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1505	chr12	120641899	120641900	rs11065050	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.23	NR	rs11065050-A	0.930613	1E-11		0.0349867	[0.025-0.045] unit decrease	NR [NR]	N
1505	chr12	120668533	120668534	rs116904997	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	12q24.23	PXN	rs116904997-G	0.9765	3E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [~ 9500000] (imputed)	N
1505	chr12	120668533	120668534	rs116904997	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	12q24.23	PXN	rs116904997-G	0.9765	7E-6		1.9778	[1.11-2.84] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1505	chr12	120668533	120668534	rs116904997	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	12q24.23	PXN	rs116904997-G	0.9765	2E-6		0.0772	[0.045-0.109] unit increase	Affymetrix [~ 9500000] (imputed)	N
1505	chr12	120670965	120670966	rs12581983	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	12q24.23	PXN	rs12581983-?	NR	3E-9		0.02531	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1505	chr12	120675016	120675017	rs79571853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.23	PXN	rs79571853-C	0.13899	4E-10		0.020392006	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1505	chr12	120688571	120688572	rs117468623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.23	NR	rs117468623-C	NR	5E-10		0.0578	[0.04-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1505	chr12	120690510	120690511	rs76019166	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q24.23	NR	rs76019166-G	0.0407293	2E-8		0.138934	[0.091-0.187] unit increase	Affymetrix [21375087] (imputed)	N
1505	chr12	120694622	120694623	rs2006194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	12q24.23		rs2006194-C	0.429425	7E-9		0.0193441	[0.013-0.026] unit decrease	Illumina [13478928] (imputed)	N
1505	chr12	120703714	120703715	rs112863429	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q24.23	NR	rs112863429-C	0.120119	3E-8		0.0836211	[0.054-0.113] unit increase	Affymetrix [21375087] (imputed)	N
1506	chr12	120723332	120723333	rs4766960	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.23	NR	rs4766960-C	0.302257	1E-19		0.0193117	[0.015-0.023] unit decrease	NR [NR]	N
1506	chr12	120728425	120728432	rs201241057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.23		rs201241057-C	NR	2E-8		0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1506	chr12	120735093	120735094	rs1185209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.23		rs1185209-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1506	chr12	120737795	120737796	rs116881341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.23	NR	rs116881341-A	NR	2E-16		0.0743	[0.057-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1506	chr12	120752246	120752247	rs11065079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs11065079-T	NR	1E-24		0.0876	[0.071-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1506	chr12	120758443	120758444	rs2701629	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.31		rs2701629-T	0.446	2E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1506	chr12	120775593	120775594	rs11614028	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.31		rs11614028-G	0.13	4E-13		7.25	z score increase	Affymetrix [9061022] (imputed)	N
1506	chr12	120791852	120791853	rs559971624	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	12q24.31	MSI1	rs559971624-T	0.9976	5E-6		0.5836	[0.33-0.83] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1506	chr12	120800822	120800823	rs757123	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	12q24.31	MSI1	rs757123-G	0.888	2E-8				NR [509413]	N
1506	chr12	120801098	120801099	rs111891989	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.31	NR	rs111891989-?	NR	3E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
1506	chr12	120801098	120801099	rs111891989	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.31	NR	rs111891989-?	NR	3E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
1506	chr12	120804693	120804694	rs61945847	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MSI1	rs61945847-T	NR	2E-8		0.0477467	[0.031-0.064] unit decrease	Affymetrix [321016] (imputed)	N
1506	chr12	120809190	120809191	rs3742038	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	12q24.31		rs3742038-?	NR	3E-7		0.925496	[0.9-0.95]	NR [685523]	N
1506	chr12	120813920	120813921	rs3898618	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q24.31	RPS27P25	rs3898618-T	0.9458	5E-14		0.2532	[0.19-0.32] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1506	chr12	120815503	120815504	rs16950101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs16950101-G	NR	1E-17		0.0442	[0.034-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1506	chr12	120815503	120815504	rs16950101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.31		rs16950101-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1506	chr12	120822048	120822049	rs206949	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	12q24.31	PXN, SIRT4, PLA2G1B, MSI1, COX6A1	rs206949-A	0.268	1E-6		1.06343	[1.04-1.09]	NR [9372253] (imputed)	N
1506	chr12	120832145	120832146	rs206966	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	12q24.31		rs206966-T	NR	5E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1506	chr12	120832145	120832146	rs206966	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	12q24.31	intergenic	rs206966-T	0.16	4E-8	(EA)	1.05	[1.02-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1506	chr12	120839217	120839217	rs565728741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q24.31	NR	rs565728741-C	0.899048	4E-10		0.0125386	[0.0086-0.0164] unit increase	Affymetrix [16582621] (imputed)	N
1506	chr12	120839217	120839217	rs565728741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q24.31	NR	rs565728741-C	0.899048	5E-9		0.0120836	[0.0079-0.0162] unit increase	Affymetrix [16582614] (imputed)	N
1506	chr12	120843620	120843621	rs149647262	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs149647262-T	0.89801	5E-9		0.0215466	[0.014-0.029] unit increase	NR [NR]	N
1506	chr12	120846038	120846039	rs77151304	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs77151304-G	0.976106	2E-9		0.0404507	[0.027-0.054] unit decrease	NR [NR]	N
1506	chr12	120847244	120847245	rs75501393	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.31	COX6A1	rs75501393-G	0.962967	2E-22		0.0129124	[0.01-0.016] unit increase	Affymetrix [13995440] (imputed)	N
1507	chr12	120856331	120856332	rs206965	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	12q24.31	NR	rs206965-?		9E-9		0.0156007	[0.01-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1507	chr12	120856858	120856859	rs1671753	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.31	NR	rs1671753-A	0.207072	2E-8		0.0213537	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
1507	chr12	120861603	120861604	rs4379896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs4379896-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1507	chr12	120862715	120862716	rs10774547	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy)	1,826 children	NA	12q24.31	TRIAP1, SFRS9, GATC, DYNLL1, COX6A1	rs10774547-T	0.6702	1E-6		4.852	z score increase	Illumina [at least 6190549] (imputed)	N
1507	chr12	120862715	120862716	rs10774547	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	12q24.31	TRIAP1, SFRS9, GATC, DYNLL1, COX6A1	rs10774547-T	0.6702	4E-6		4.632	z score increase	Illumina [at least 6190549] (imputed)	N
1507	chr12	120867699	120867700	rs73221357	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.31	NR	rs73221357-?	NR	6E-6		4.539	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.31		rs76929617-G	NR	2E-25		0.0554	[0.045-0.066] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.31		rs76929617-G	NR	4E-26		0.0449	[0.037-0.053] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	COX6A1	rs76929617-G	NR	5E-8		0.0396289	[0.025-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs76929617-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs76929617-?	NR	2E-42				NR [~ 8900000] (imputed)	N
1507	chr12	120867797	120867798	rs76929617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs76929617-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1507	chr12	120870773	120870774	rs76475417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs76475417-A	NR	4E-9		0.0417	[0.028-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1507	chr12	120870773	120870774	rs76475417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs76475417-A	NR	2E-12		0.05	[0.036-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1507	chr12	120880433	120880434	rs17431357	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	12q24.31	TRIAP1	rs17431357-C	0.01	1E-6	(Insulin)	34.0	[22.00 - 44.00] % decrease	Affymetrix [872243]	N
1507	chr12	120882835	120882837	rs3858722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.31	AL021546.6, TRIAP1	rs3858722-T	0.332123	3E-26		0.04092149	[0.033-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120887512	120887513	rs4767896	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q24.31	GATC	rs4767896-G	0.971433	7E-15		0.00535822	[0.004-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
1507	chr12	120891315	120891316	rs1794735	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.31	NR	rs1794735-?	NR	2E-33				Affymetrix [NR]	N
1507	chr12	120892378	120892378	rs528505236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	AL021546.6, GATC	rs528505236-AT	0.327779	2E-28		0.042574625	[0.035-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120892378	120892378	rs528505236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	AL021546.6, GATC	rs528505236-AT	0.327837	6E-17		0.023690904	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1507	chr12	120894317	120894318	rs7957424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12q24.31		rs7957424-A	0.62026	7E-10		0.0228158	[0.016-0.03] unit increase	Illumina [13476266] (imputed)	N
1507	chr12	120903935	120903936	rs3893104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	SRSF9	rs3893104-A	0.331035	2E-27		0.041800324	[0.034-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120903935	120903936	rs3893104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	SRSF9	rs3893104-A	0.331071	2E-35		0.047557816	[0.04-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120903935	120903936	rs3893104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	SRSF9	rs3893104-A	0.331064	2E-36		0.048368666	[0.041-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120907308	120907309	rs145350287	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q24.31	NR	rs145350287-A	0.03993	2E-11		0.042363178	[0.03-0.055] unit decrease	Affymetrix [10549349] (imputed)	N
1507	chr12	120909980	120909980	rs558163981	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12q24.31	DYNLL1	rs558163981-CA	0.3297	6E-60		0.06199417	[0.055-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120910003	120910004	rs4767902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q24.31	DYNLL1	rs4767902-T	0.3319	4E-66		0.06562033	[0.058-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120910003	120910004	rs4767902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q24.31	DYNLL1	rs4767902-T	0.3319	2E-83		0.07385731	[0.066-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120912209	120912210	rs17431717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.31	Intergenic	rs17431717-A	0.1779	5E-11	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1507	chr12	120912209	120912210	rs17431717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs17431717-A	0.1779	8E-16	(MTAG)	0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1507	chr12	120912209	120912210	rs17431717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q24.31	Intergenic	rs17431717-G	0.8221	5E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1507	chr12	120912209	120912210	rs17431717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.31	Intergenic	rs17431717-A	0.168	1E-8	(MTAG)	0.0174	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1507	chr12	120917721	120917722	rs34179846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs34179846-C	NR	3E-23		0.039	[0.031-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1507	chr12	120917721	120917722	rs34179846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs34179846-C	NR	4E-33		0.0472	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1507	chr12	120920129	120920130	rs879508109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	DYNLL1	rs879508109-A	0.446916	8E-13		0.026383936	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120920129	120920130	rs879508109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	DYNLL1	rs879508109-A	0.446898	3E-12		0.025062503	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120920129	120920130	rs879508109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.31	DYNLL1	rs879508109-A	0.446904	6E-12		0.025683336	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120920129	120920130	rs879508109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	DYNLL1	rs879508109-A	0.446938	2E-19		0.03311207	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120920129	120920130	rs879508109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	DYNLL1	rs879508109-A	0.44693	6E-18		0.031641662	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120920142	120920143	rs11352199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.31	DYNLL1	rs11352199-A	0.4465	9E-68		0.0633918	[0.056-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120920142	120920143	rs11352199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	12q24.31	DYNLL1	rs11352199-A	0.4465	2E-79		0.06871397	[0.062-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120920142	120920143	rs11352199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q24.31	DYNLL1	rs11352199-A	0.4465	5E-78		0.06803904	[0.061-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1507	chr12	120922848	120922849	rs1167688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	DYNLL1	rs1167688-A	0.338312	2E-52		0.03670951	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120922848	120922849	rs1167688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	DYNLL1	rs1167688-A	0.338203	4E-33		0.033175807	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120922848	120922849	rs1167688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31	DYNLL1	rs1167688-A	0.33834	2E-37		0.0223988	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120922848	120922849	rs1167688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.31	DYNLL1	rs1167688-A	0.338312	1E-26		0.0252493	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1507	chr12	120925794	120925795	rs616157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs616157-T	0.8295	1E-14	(MTAG)	0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1507	chr12	120946567	120946568	rs1671770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs1671770-A	0.1786	9E-12		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1507	chr12	120954489	120954490	rs3742049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.31	NR	rs3742049-T	NR	3E-11		0.0266	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1507	chr12	120963925	120963926	rs117803005	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs117803005-A	0.978805	4E-10		0.0451123	[0.031-0.059] unit increase	NR [NR]	N
1507	chr12	120974509	120974510	rs614226	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	12q24.31	RNF10, COQ5	rs614226-C	0.83	2E-6	(ESRD)	1.35	[1.19-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1507	chr12	120976370	120976371	rs4102203	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	12q24.31		rs4102203-T	0.8936	8E-12		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1507	chr12	120978656	120978657	rs373465055	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.31	COQ5, RNF10	rs373465055-CTTT	0.214776	4E-9	(-28 ms)	0.0419395	[0.028-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1507	chr12	120978656	120978657	rs373465055	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.31	COQ5, RNF10	rs373465055-CTTT	0.214776	1E-9	(-26 ms)	0.0436799	[0.03-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1507	chr12	120978656	120978657	rs373465055	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	12q24.31	COQ5, RNF10	rs373465055-CTTT	0.214776	1E-8	(-24 ms)	0.0418758	[0.028-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1508	chr12	120982075	120982076	rs11065156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs11065156-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1508	chr12	120988697	120988698	rs35607217	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	12q24.31	RNF10	rs35607217-G	NR	2E-6		0.4783056	[0.26-0.69] unit decrease	Illumina [> 6200000] (imputed)	N
1508	chr12	120991708	120991709	rs35057862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.31	RNF10	rs35057862-G	0.37808	3E-11		0.015989717	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr12	120994888	120994888	rs542675489	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	12q24.31	NR	rs542675489-CA	0.4	5E-8		0.026	[0.017-0.035] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1508	chr12	120994888	120994888	rs542675489	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	12q24.31	RNF10	rs542675489-C	0.6	3E-9		0.027	[0.017-0.037] unit increase	Affymetrix [~ 73355677] (imputed)	N
1508	chr12	120999126	120999127	rs4767915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs4767915-A	NR	4E-9		0.0236	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1508	chr12	120999126	120999127	rs4767915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs4767915-A	NR	6E-18		0.0347	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121000132	121000133	rs585510	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.31	RNF10	rs585510-G	0.332	7E-69		0.06686965	[0.059-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1508	chr12	121020249	121020250	rs523522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	12q24.31	POP5	rs523522-T	0.3319	2E-83		0.07367767	[0.066-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1508	chr12	121022480	121022481	rs16950305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.31	Intergenic	rs16950305-A	0.1655	5E-10	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1508	chr12	121022480	121022481	rs16950305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.31	Intergenic	rs16950305-G	0.8345	7E-10		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1508	chr12	121028906	121028907	rs117368206	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs117368206-T	NR	4E-11		0.0571	[0.04-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121028906	121028907	rs117368206	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs117368206-T	NR	2E-12		0.0606	[0.044-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121028906	121028907	rs117368206	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs117368206-C	0.979905	8E-17		0.0602134	[0.046-0.074] unit increase	NR [NR]	N
1508	chr12	121029353	121029354	rs559904	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	12q24.31	POP5	rs559904-A	0.27	3E-7		0.96	[0.59-1.33] g/day increase	Affymetrix [10353649] (imputed)	N
1508	chr12	121029603	121029604	rs80097534	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q24.31	POP5, CABP1	rs80097534-G	0.9034	3E-9		1.0363449		Affymetrix [11880941] (imputed)	N
1508	chr12	121052179	121052180	rs7302482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs7302482-C	NR	3E-11		0.0293	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121052179	121052180	rs7302482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs7302482-C	NR	2E-38		0.0573	[0.049-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1508	chr12	121052179	121052180	rs7302482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs7302482-C	NR	2E-48		0.0647	[0.056-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1508	chr12	121064030	121064031	rs146791497	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	12q24.31		rs146791497-?	NR	2E-8		0.0389	unit increase	NR [NR]	N
1508	chr12	121069200	121069201	rs4767921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs4767921-A	0.3624	2E-11	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1508	chr12	121069200	121069201	rs4767921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs4767921-A	0.3638	5E-9	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1508	chr12	121070010	121070011	rs7976660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs7976660-T	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1508	chr12	121070010	121070011	rs7976660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs7976660-T	NR	6E-15		0.0209	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1508	chr12	121070250	121070251	rs10849772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs10849772-A	NR	3E-37		0.0698	[0.059-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121070250	121070251	rs10849772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs10849772-A	NR	1E-43		0.0759	[0.065-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121072227	121072228	rs148215986	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	12q24.31	NR	rs148215986-?	NR	9E-9		5.745	NR z score decrease	Illumina [at least 830937] (imputed)	N
1508	chr12	121073171	121073172	rs4767923	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12q24.31	ACADS	rs4767923-T	0.0354	3E-14	(C4)	0.371	[0.28-0.46] unit increase	Illumina [~ 47000000] (imputed)	N
1508	chr12	121080102	121080103	rs10849773	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs10849773-A	0.984791	2E-21		0.078306	[0.062-0.094] unit increase	NR [NR]	N
1508	chr12	121083278	121083279	rs1109480	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.31		rs1109480-G	0.611	2E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1508	chr12	121083278	121083279	rs1109480	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.31	CABP1	rs1109480-A	0.3888	9E-10		0.0136243375	[0.0093-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
1508	chr12	121083278	121083279	rs1109480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q24.31	NR	rs1109480-A	0.384	2E-14		0.00854408	[0.0064-0.0107] unit decrease	NR [9732723] (imputed)	N
1508	chr12	121083278	121083279	rs1109480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q24.31	NR	rs1109480-A	0.384	2E-10		0.016691703	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1508	chr12	121083278	121083279	rs1109480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	12q24.31	NR	rs1109480-A	0.383	6E-10		0.00933472	[0.0064-0.0123] unit increase	NR [9732723] (imputed)	N
1508	chr12	121083278	121083279	rs1109480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	12q24.31		rs1109480-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1508	chr12	121087219	121087220	rs149523036	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs149523036-G	0.988377	8E-15		0.0700766	[0.052-0.088] unit increase	NR [NR]	N
1508	chr12	121088885	121088886	rs522632	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	12q24.31	NR	rs522632-G	0.55	5E-8		0.98	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1508	chr12	121090194	121090195	rs76841017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs76841017-C	NR	4E-9		0.0428	[0.028-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121090194	121090195	rs76841017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs76841017-C	NR	1E-14		0.0561	[0.042-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1508	chr12	121095171	121095172	rs2686555	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	12q24.31	CABP1	rs2686555-A	NR	2E-21				NR [25015711] (imputed)	N
1508	chr12	121099301	121099302	rs7975703	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	12q24.31	CABP1	rs7975703-T	NR	3E-8		0.88	[0.84-0.92]	Illumina [NR] (imputed)	N
1508	chr12	121099301	121099302	rs7975703	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	12q24.31	CABP1	rs7975703-T	NR	1E-6		0.869	[0.81-0.93]	Illumina [5719137] (imputed)	N
1508	chr12	121109211	121109212	rs78025165	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q24.31		rs78025165-?	NR	6E-7		0.9660469	[0.59-1.34] unit decrease	Illumina [9842460] (imputed)	N
1509	chr12	121111213	121111214	rs34067374	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q24.31	CABP1	rs34067374-T	0.14	3E-8		0.0183	[0.012-0.025] unit increase	Illumina [~ 250000] (imputed)	N
1509	chr12	121123419	121123420	rs191977866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs191977866-C	NR	4E-16		0.0716	[0.054-0.089] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr12	121123419	121123420	rs191977866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs191977866-C	NR	2E-16		0.0725	[0.055-0.09] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr12	121123920	121123920	rs530304512	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	CABP1, MLEC	rs530304512-C	0.580323	3E-161	(ethylmalonate)	0.614	[0.57-0.66] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121128698	121128699	rs2005455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.31		rs2005455-?	NR	6E-67				NR [~ 8900000] (imputed)	N
1509	chr12	121128881	121128882	rs10431385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.31	NR	rs10431385-C	0.397057	3E-85		0.036921	[0.033-0.041] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1509	chr12	121140318	121140319	rs2393778	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Fractional excretion of metabolites in chronic kidney disease	1,143 European ancestry cases	NA	12q24.31	MLEC	rs2393778-T	NR	3E-14	(Butyrylcarnitine, Isobutyrylcarnitine)	0.344447	[0.26-0.43] unit decrease	Illumina [up to 9281895] (imputed)	N
1509	chr12	121142637	121142638	rs558664720	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	MLEC, UNC119B	rs558664720-C	0.976587	1E-31	(butyrylcarnitine (C4))	1.174	[0.98-1.37] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121146218	121146219	rs11065219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs11065219-T	NR	2E-12		0.0277	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121151062	121151069	rs3833788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q24.31		rs3833788-C	NR	9E-48		0.0293	[0.025-0.033] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1509	chr12	121151062	121151069	rs3833788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.31		rs3833788-C	NR	5E-96		0.0486	[0.044-0.053] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1509	chr12	121151062	121151069	rs3833788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.31		rs3833788-C	NR	6E-86		0.0459	[0.041-0.05] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1509	chr12	121151062	121151069	rs3833788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q24.31	UNC119B	rs3833788-C	0.3891	3E-39		0.04751259	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121152666	121152667	rs7313271	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Ethylmalonate levels	291 European ancestry individuals	NA	12q24.31		rs7313271-T	0.2679	6E-48		0.1519	unit increase	Illumina [7049691] (imputed)	N
1509	chr12	121154220	121154221	rs34734847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q24.31	UNC119B	rs34734847-C	0.3891	6E-45		0.05085544	[0.044-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121156040	121156041	rs56273049	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q24.31		rs56273049-A	0.612	4E-90		0.23	[0.21-0.25] % increase	Affymetrix [NR] (imputed)	N
1509	chr12	121156040	121156041	rs56273049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31	UNC119B	rs56273049-T	0.388895	4E-154		0.0545557	[0.05-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121156040	121156041	rs56273049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.31	UNC119B	rs56273049-T	0.388869	9E-119		0.05314529	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121156040	121156041	rs56273049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs56273049-?	NR	3E-117				NR [~ 8900000] (imputed)	N
1509	chr12	121156289	121156290	rs35360964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.31	UNC119B	rs35360964-C	0.388923	8E-63		0.03780354	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121156289	121156290	rs35360964	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs35360964-C	0.324385	4E-135				Affymetrix, Illumina [20825802] (imputed)	N
1509	chr12	121157534	121157535	rs56179458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	UNC119B	rs56179458-A	0.388638	9E-116		0.053013954	[0.048-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121157534	121157535	rs56179458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	UNC119B	rs56179458-A	0.388616	6E-139		0.058570217	[0.054-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121157534	121157535	rs56179458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q24.31	NR	rs56179458-A	0.388986	4E-132		0.048228	[0.044-0.052] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs55730005-C	0.610136	2E-75				Affymetrix, Illumina [22063850] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.31	NR	rs55730005-C	0.610024	5E-76		0.035545	[0.032-0.039] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs55730005-A	0.331011	2E-183				Affymetrix, Illumina [24246363] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.31	NR	rs55730005-A	0.39	3E-177		0.052724	[0.049-0.056] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs55730005-?	NR	1E-55				NR [~ 8900000] (imputed)	N
1509	chr12	121157535	121157536	rs55730005	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q24.31	UNC119B	rs55730005-A	NR	7E-17		0.0328067	[0.025-0.041] unit increase	Affymetrix [16832071] (imputed)	N
1509	chr12	121157850	121157851	rs3752531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.31	UNC119B	rs3752531-G	0.388755	2E-41		0.031161007	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121157982	121157983	rs78686363	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs78686363-A	NR	1E-11		0.0485	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121160614	121160615	rs2066938	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.31	NR	rs2066938-G	0.284	4E-14	(ACADS)	0.276	NR unit decrease	Illumina [1671387] (imputed)	N
1509	chr12	121160614	121160615	rs2066938	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q24.31	ACADS	rs2066938-A	0.74	3E-630	(butyrylcarnitine)	0.211	[0.2-0.22] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1509	chr12	121160614	121160615	rs2066938	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12q24.31	ACADS, MLEC, UNC119B	rs2066938-?	NR	4E-177	(butyrylcarnitine)	0.1983	[NR] unit increase	Affymetrix [655658]	N
1509	chr12	121160614	121160615	rs2066938	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	12q24.31	ACADS	rs2066938-G	0.252	4E-305	(SM-1 + 12 other traits)	0.606	[NR] unit increase	Affymetrix, Illumina [534665]	N
1509	chr12	121162853	121162854	rs2948149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs2948149-G	0.373059	2E-85				Affymetrix, Illumina [24332387] (imputed)	N
1509	chr12	121162988	121162989	rs3021338	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12q24.31	RP11-173P15.5, ACADS	rs3021338-G	0.3892	4E-24		0.03677785	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121162995	121162996	rs116877397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs116877397-T	NR	2E-9		0.0651	[0.044-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121162995	121162996	rs116877397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs116877397-T	NR	6E-17		0.0909	[0.07-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121163517	121163518	rs2239760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q24.31	RP11-173P15.5, ACADS	rs2239760-A	0.3969	6E-23		0.03582095	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121169355	121169356	rs11065231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.31		rs11065231-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1509	chr12	121170338	121170339	rs34491494	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS	rs34491494-C	0.51809	1E-128	(butyrylcarnitine (C4))	0.544	[0.5-0.59] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121173430	121173431	rs575437	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS	rs575437-T	0.416578	9E-121	(ethylmalonate)	0.52	[0.48-0.56] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121173973	121173973	rs59063082	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12q24.31	ACADS	rs59063082-T	0.88	1E-38	(C4)	0.3598	[0.31-0.41] unit decrease	Illumina [~ 47000000] (imputed)	N
1509	chr12	121175523	121175524	rs2014355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.31	NR	rs2014355-C	0.2613	8E-16	(ACADS)	0.3044	NR unit decrease	Illumina [1671387] (imputed)	N
1509	chr12	121175523	121175524	rs2014355	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	12q24.31	ACADS	rs2014355-C	NR	4E-27	(Butyrylcarnitine / Isobutyrylcarnitine)	0.417057	[0.34-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
1509	chr12	121175523	121175524	rs2014355	20037589	Illig T	2009-12-27	Nat Genet	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	12q24.31	ACADS	rs2014355-T	NR	5E-96	(C3/C4)	0.218	[NR] unit decrease	Affymetrix [517480]	N
1509	chr12	121175677	121175678	rs1800556	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS	rs1800556-C	0.97542	8E-12	(ethylmalonate)	0.483	[0.34-0.62] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121176082	121176083	rs1799958	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	12q24.31	ACADS	rs1799958-A	0.27	7E-25	(5-hydroxyhexanoate, ethylmalonate, N-formylmethionine, triacetate lactone)	0.009	[0.007-0.011] unit increase	Illumina [7750367] (imputed)	N
1509	chr12	121176082	121176083	rs1799958	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12q24.31	ACADS	rs1799958-A	0.27	8E-169	(ethylmalonate)	0.514	[0.48-0.55] unit increase	Illumina [7750367] (imputed)	N
1509	chr12	121176082	121176083	rs1799958	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	12q24.31	ACADS	rs1799958-A	NR	6E-37	(Butyrylcarnitine / Isobutyrylcarnitine/Isovalerylcarnitine / 2-Methylbutyrylcarnitine / Valerylcarnitine)	0.541971	[0.46-0.62] unit increase	Illumina [up to 9281895] (imputed)	N
1509	chr12	121176082	121176083	rs1799958	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	12q24.31	ACADS	rs1799958-A	NR	2E-33	(Carnitine (free)/Butyrylcarnitine / Isobutyrylcarnitine)	0.484864	[0.41-0.56] unit decrease	Illumina [up to 9281895] (imputed)	N
1509	chr12	121176548	121176549	rs487915	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	12q24.31	ACADS	rs487915-?	NR	2E-8		0.02875	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1509	chr12	121177271	121177272	rs3916	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12q24.31	ACADS	rs3916-C	0.26	3E-11	(methylsuccinate)	0.161	[0.11-0.21] unit increase	Illumina [7750367] (imputed)	N
1509	chr12	121177271	121177272	rs3916	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	12q24.31	ACADS	rs3916-G	0.28	2E-22	(0.8875, Unknown)	0.4	[NR] unit increase	Illumina [713870] (imputed)	N
1509	chr12	121178897	121178898	rs78885399	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	12q24.31	ACADS	rs78885399-C	NR	1E-8		1.1547344	[1.09-1.22]	Illumina [6627481] (imputed)	N
1509	chr12	121179276	121179277	rs7964228	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS, SPPL3	rs7964228-G	0.885277	4E-13	(ethylmalonate)	0.264	[0.19-0.33] unit increase	Illumina [13039987] (imputed)	N
1509	chr12	121179938	121179939	rs12825376	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS, SPPL3	rs12825376-C	0.952496	4E-46	(ethylmalonate)	0.724	[0.62-0.82] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121179938	121179939	rs12825376	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.31	ACADS	rs12825376-T	0.116	4E-9		0.018421942	[0.012-0.025] unit increase	Affymetrix [11514654] (imputed)	N
1509	chr12	121180018	121180019	rs34708625	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	12q24.31	ACADS, SPPL3, UNC119B, RP11-173P15.7	rs34708625-?	NR	5E-14	(ethylmalonate)	0.9	[NR] unit increase	Illumina [14760605] (imputed)	N
1509	chr12	121180018	121180019	rs34708625	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS, SPPL3	rs34708625-T	0.70135	9E-54	(methylsuccinate)	0.361	[0.32-0.41] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121180018	121180019	rs34708625	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS, SPPL3	rs34708625-T	0.70135	8E-11	(isobutyrylglycine)	0.159	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
1509	chr12	121180018	121180019	rs34708625	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12q24.31	ACADS, SPPL3	rs34708625-T	0.70135	8E-11	(isobutyrylglycine)	0.159	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
1509	chr12	121180018	121180019	rs34708625	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	12q24.31	ACADS, SPPL3	rs34708625-C	NR	3E-40	(Propionylcarnitine/Butyrylcarnitine / Isobutyrylcarnitine)	0.54364	[0.47-0.62] unit decrease	Illumina [up to 9281895] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	ACADS, SPPL3	rs11438927-G	0.539607	4E-184	(butyrylcarnitine (C4))	0.654	[0.61-0.7] unit decrease	Illumina [13039987] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	RP11-173P15.7	rs11438927-GC	0.379188	5E-15		0.018143252	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	RP11-173P15.7	rs11438927-GC	0.37918	3E-24		0.023510534	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	RP11-173P15.7	rs11438927-GC	0.379051	1E-10		0.014798352	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	RP11-173P15.7	rs11438927-GC	0.379045	3E-17		0.019454792	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1509	chr12	121183873	121183873	rs11438927	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q24.31	RP11-173P15.7	rs11438927-GC	0.378	3E-12		0.02595221	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121185144	121185145	rs3861791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q24.31		rs3861791-G	NR	5E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1509	chr12	121186245	121186246	rs58235352	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	12q24.31	NR	rs58235352-G	NR	2E-10		1.0526316		NR [NR] (imputed)	N
1509	chr12	121186245	121186246	rs58235352	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q24.31	ACADS, SPPL3	rs58235352-?		5E-8				NR [6786993] (imputed)	N
1509	chr12	121186313	121186314	rs56401401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs56401401-A	NR	9E-24		0.0673	[0.054-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121186313	121186314	rs56401401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs56401401-A	NR	2E-27		0.0729	[0.06-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr12	121194564	121194565	rs610578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs610578-G	0.6975	7E-16				Affymetrix, Illumina [24649327] (imputed)	N
1509	chr12	121194564	121194565	rs610578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q24.31	NR	rs610578-G	0.662725	8E-18		0.016778	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1509	chr12	121194861	121194862	rs482522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.31		rs482522-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1509	chr12	121198710	121198711	rs71454665	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs71454665-T	NR	5E-31		0.0597	[0.05-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr12	121198710	121198711	rs71454665	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs71454665-T	NR	5E-44		0.0718	[0.062-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr12	121202663	121202664	rs9431	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	12q24.31	SPPL3	rs9431-A	0.497	4E-11		0.028	[0.02-0.036] unit decrease	NR [NR] (imputed)	N
1509	chr12	121202663	121202664	rs9431	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	12q24.31	SPPL3	rs9431-A	0.497	2E-11		0.028	[0.02-0.036] unit decrease	NR [7647814] (imputed)	N
1509	chr12	121203426	121203427	rs551125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs551125-T	0.620645	2E-12				Affymetrix, Illumina [23114412] (imputed)	N
1509	chr12	121203426	121203427	rs551125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.31	NR	rs551125-T	0.583956	4E-13		0.014123	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1509	chr12	121204681	121204682	rs497273	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	12q24.31	SPPL3	rs497273-G	0.65	8E-7		1.14	[1.08-1.21]	Illumina [~ 2100000] (imputed)	N
1509	chr12	121205077	121205078	rs3213572	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	12q24.31	NR	rs3213572-A	0.4745	6E-20		1.02	[1.016-1.024]	NR [8098588] (imputed)	N
1509	chr12	121209192	121209193	rs551087	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	12q24.31	SPPL3, SRSF9	rs551087-G	0.29	4E-8		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1509	chr12	121216531	121216550	rs574141958	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.31	NR	rs574141958-C	0.3589	6E-10	(ACADS)	0.2153	NR unit decrease	Illumina [1671387] (imputed)	N
1509	chr12	121220374	121220375	rs2393717	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q24.31	NR	rs2393717-G	0.4697	1E-11		1.041	[1.029-1.052]	Affymetrix [15688218] (imputed)	N
1509	chr12	121220374	121220375	rs2393717	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	12q24.31	NR	rs2393717-G	0.4697	8E-12		1.038	[1.027-1.048]	Affymetrix [15688218] (imputed)	N
1509	chr12	121220819	121220820	rs679833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.31	NR	rs679833-G	0.718846	2E-10		0.013313	[0.0092-0.0174] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1509	chr12	121222555	121222556	rs3213567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q24.31		rs3213567-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1509	chr12	121223058	121223058	rs745448634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	12q24.31	SPPL3	rs745448634-CA	0.1555	7E-20		0.04523769	[0.036-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1509	chr12	121228054	121228055	rs584001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q24.31	SPPL3	rs584001-T	0.585201	5E-9		0.013140273	[0.0087-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121228054	121228055	rs584001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q24.31	SPPL3	rs584001-T	0.585228	2E-14		0.017064491	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr12	121228054	121228055	rs584001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.31		rs584001-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1509	chr12	121228629	121228629	rs35743748	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.31	NR	rs35743748-CT	0.444	2E-9		1.101	[1.07-1.13]	Illumina [11270530] (imputed)	N
1509	chr12	121228790	121228791	rs708785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs708785-A	0.625917	3E-20				Affymetrix, Illumina [19872809] (imputed)	N
1509	chr12	121228790	121228791	rs708785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q24.31	NR	rs708785-A	0.585791	6E-21		0.018842	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1509	chr12	121230331	121230332	rs36096261	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q24.31	SPPL3	rs36096261-A		6E-9		1.032	[NR]	Affymetrix [up to 79000000] (imputed)	N
1509	chr12	121231815	121231816	rs77205232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs77205232-C	NR	2E-11		0.0634	[0.045-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr12	121236257	121236258	rs1039302	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	12q24.31	SPPL3	rs1039302-T	0.36	5E-6	(CRP)	0.21	[NR] mg/L increase	Affymetrix [408775]	N
1509	chr12	121238130	121238131	rs151274144	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q24.31	SPPL3	rs151274144-C	0.9978	7E-6		0.8996	[0.51-1.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1509	chr12	121238606	121238607	rs138213721	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q24.31		rs138213721-T	NR	3E-10		0.6412598	[0.558257428226303-0.736602991934226]	Illumina [8919992] (imputed)	N
1510	chr12	121243789	121243790	rs2047568	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q24.31	SPPL3, ACADS	rs2047568-?		4E-8				NR [6786993] (imputed)	N
1510	chr12	121261161	121261162	rs4767938	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs4767938-C	0.371864	2E-40		0.0280127	[0.024-0.032] unit increase	NR [NR]	N
1510	chr12	121264009	121264010	rs58291418	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	12q24.31		rs58291418-?	NR	2E-6		1.214	[1.121-1.314]	Affymetrix [7975321] (imputed)	N
1510	chr12	121267125	121267126	rs11611087	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	12q24.31	NR	rs11611087-T	0.474553562739746	3E-10		0.007715556	[0.0053-0.0101] unit increase	NR [NR]	N
1510	chr12	121271705	121271706	rs12816397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs12816397-G	NR	1E-35		0.0674	[0.057-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1510	chr12	121271705	121271706	rs12816397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs12816397-G	NR	2E-43		0.075	[0.064-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1510	chr12	121271733	121271734	rs11065286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.31	SPPL3	rs11065286-C	0.554807	6E-12		0.015327874	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1510	chr12	121271733	121271734	rs11065286	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.31	COQ5, ACADS, SPPL3	rs11065286-?		8E-11				Affymetrix, Illumina [NR] (imputed)	N
1510	chr12	121271733	121271734	rs11065286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q24.31	NR	rs11065286-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1510	chr12	121273142	121273143	rs532703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q24.31		rs532703-G	NR	4E-21		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1510	chr12	121273855	121273856	rs117477328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs117477328-T	NR	9E-12		0.0735	[0.052-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr12	121278265	121278266	rs625228	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q24.31	SPPL3	rs625228-A	0.43	2E-15				NR [> 9500000] (imputed)	N
1510	chr12	121290173	121290174	rs2461475	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	12q24.31	SPPL3, ACADS	rs2461475-C	0.4727	4E-11		1.03	[1.02-1.04]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1510	chr12	121297814	121297815	rs11065299	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs11065299-A	0.0754	6E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1510	chr12	121298643	121298644	rs12822123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs12822123-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1510	chr12	121300987	121300988	rs660549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs660549-T	0.5662	3E-15	(MTAG)	0.0104	[0.0079-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1510	chr12	121303819	121303820	rs12367037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs12367037-A	0.3954	1E-14	(MTAG)	0.013	[0.0097-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1510	chr12	121309441	121309442	rs791218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.31	Intergenic	rs791218-C	0.8039	4E-10	(MTAG)	0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1510	chr12	121316251	121316252	rs656933	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	12q24.31	SPPL3	rs656933-A	0.58	1E-15		8.02	z-score increase	Affymetrix [4314223] (imputed)	N
1510	chr12	121317074	121317075	rs4454799	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12q24.31	SPPL3	rs4454799-?	NR	3E-45	(butyrylcarnitine)	0.09273	[NR] unit increase	Affymetrix [655658]	N
1510	chr12	121319603	121319603	rs530409268	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	SPPL3	rs530409268-CA	0.4837	3E-13		0.0138	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1510	chr12	121324726	121324727	rs3897746	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	12q24.31	SPPL3	rs3897746-G	0.483057	2E-7		0.0292	[0.017-0.041] unit increase	Illumina [1220000] (imputed)	N
1510	chr12	121327808	121327809	rs187150787	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	12q24.31	NR	rs187150787-G	0.9627	7E-12		0.1838	[0.13-0.24] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1510	chr12	121327808	121327809	rs187150787	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	12q24.31		rs187150787-A	0.034648308	7E-15		1.2271333	[1.165543028-1.291978183]	Illumina [8919992] (imputed)	N
1510	chr12	121327808	121327809	rs187150787	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	12q24.31	HNF1A	rs187150787-A	0.04	6E-12		1.2	1.14-1.27	Illumina [12557761] (imputed)	N
1510	chr12	121328081	121328082	rs35905305	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	12q24.31		rs35905305-?	NR	5E-12		0.0202	unit decrease	NR [NR]	N
1510	chr12	121332838	121332839	rs1168950	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs1168950-C	NR	5E-14		0.0408	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr12	121334132	121334133	rs11065318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs11065318-A	NR	5E-9		0.04	[0.027-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1510	chr12	121338220	121338221	rs117130360	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs117130360-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1510	chr12	121340598	121340599	rs1151849	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	12q24.31	NR	rs1151849-?		1E-9				NR [520857]	N
1510	chr12	121340598	121340599	rs1151849	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q24.31	NR	rs1151849-A	NR	2E-8		5.6	z score decrease	Affymetrix [10847151] (imputed)	N
1510	chr12	121343892	121343893	rs1718188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs1718188-A	0.4365	9E-12		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1510	chr12	121348300	121348301	rs117548270	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs117548270-A	0.985539	5E-12		0.0587897	[0.042-0.075] unit decrease	NR [NR]	N
1510	chr12	121352073	121352074	rs142601917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs142601917-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1510	chr12	121352073	121352074	rs142601917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.31	Intergenic	rs142601917-T	0.0172	2E-8	(MTAG)	0.0384	[0.025-0.052] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1510	chr12	121352073	121352074	rs142601917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.31	Intergenic	rs142601917-C	0.9828	5E-9		0.0438	[0.029-0.058] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1510	chr12	121353087	121353088	rs2701184	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	12q24.31	SPPL3	rs2701184-T	0.58789	2E-11		1.0415916	[1.02921701919994-1.05411508796116]	NR [9572556] (imputed)	N
1510	chr12	121358626	121358627	rs371638091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.31	RPL12P33	rs371638091-A	0.373509	1E-9		0.014442247	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr12	121358626	121358627	rs371638091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	12q24.31	RPL12P33	rs371638091-A	0.3697	6E-10		0.02318482	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1510	chr12	121358626	121358627	rs371638091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	12q24.31	RPL12P33	rs371638091-A	0.3696	7E-10		0.0232805	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1510	chr12	121358643	121358644	rs1696390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	12q24.31	NR	rs1696390-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1510	chr12	121363505	121363506	rs118074491	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	12q24.31	HNF1A	rs118074491-G	0.032	9E-20		1.21	[1.16-1.25]	Affymetrix, Illumina [11800000] (imputed)	N
1510	chr12	121363723	121363724	rs6489785	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.31		rs6489785-T	0.36	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1510	chr12	121363723	121363724	rs6489785	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q24.31	SPPL3, HNF1A-AS1	rs6489785-T	0.37	2E-15		1.043	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1510	chr12	121363723	121363724	rs6489785	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.31	TCF1, HNF1A	rs6489785-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1510	chr12	121363822	121363823	rs1696361	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	12q24.31	SPPL3, HNF1A	rs1696361-T	0.359	1E-11		1.109	[1.076-1.142]	Affymetrix [10894596] (imputed)	N
1510	chr12	121363822	121363823	rs1696361	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	12q24.31	SPPL3, HNF1A	rs1696361-T	0.359	7E-7		0.696	[0.42-0.97] unit decrease	Affymetrix [10894596] (imputed)	N
1510	chr12	121363834	121363835	rs77741769	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.31		rs77741769-T	0.39	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
1510	chr12	121363834	121363835	rs77741769	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	12q24.31	NR	rs77741769-?		8E-9				NR [11140414]	N
1510	chr12	121363834	121363835	rs77741769	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	12q24.31	SPPL3	rs77741769-C	0.653693	3E-8		1.0367322	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
1510	chr12	121363834	121363835	rs77741769	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q24.31	NR	rs77741769-T	NR	8E-9		5.775	z score increase	Affymetrix [10847151] (imputed)	N
1510	chr12	121363834	121363835	rs77741769	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q24.31	intergenic	rs77741769-T	0.3492	1E-10		0.02403929	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1510	chr12	121364024	121364025	rs61946386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	12q24.31	NR	rs61946386-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1510	chr12	121365430	121365431	rs188074962	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	12q24.31	HNF1A-AS1, SPPL3	rs188074962-G	0.352	2E-6		1.053	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
1510	chr12	121365430	121365431	rs188074962	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q24.31	SPPL3, HNF1A-AS1	rs188074962-?	NR	2E-20		1.073	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1510	chr12	121365430	121365431	rs188074962	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	12q24.31	SPPL3, HNF1A-AS1	rs188074962-G	NR	6E-11		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1510	chr12	121365431	121365432	rs182546302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.31		rs182546302-A	0.332691	8E-10		0.014692791	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr12	121368256	121368257	rs147363223	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q24.31		rs147363223-?	NR	2E-6		0.9167983	[0.54-1.29] unit increase	Illumina [9842460] (imputed)	N
1510	chr12	121368517	121368518	rs3999421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3999421-A	0.607963	2E-8		0.0209334	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121374370	121374372	rs377218055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31		rs377218055-T	0.429878	1E-20		0.021737	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1511	chr12	121374370	121374372	rs377218055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.31		rs377218055-T	0.429879	3E-21		0.021391213	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1511	chr12	121375483	121375484	rs77059132	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12q24.31	ACADS	rs77059132-A	0.9733	2E-17	(C4)	0.671	[0.52-0.83] unit decrease	Illumina [~ 47000000] (imputed)	N
1511	chr12	121375557	121375558	rs10849820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.31		rs10849820-T	0.08912	4E-12		0.027960122	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1511	chr12	121376415	121376416	rs1186380	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	12q24.31		rs1186380-T	0.2538	6E-6	(EA)	0.9724	[0.55-1.39] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1511	chr12	121377655	121377656	rs7969196	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.31	NR	rs7969196-T	0.4023	6E-9				NR [9056863] (imputed)	N
1511	chr12	121377845	121377847	rs10540448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q24.31		rs10540448-C	NR	2E-11		0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1511	chr12	121378975	121378976	rs2393794	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs2393794-T	0.813641	4E-45		0.0367245	[0.032-0.042] unit decrease	NR [NR]	N
1511	chr12	121380540	121380541	rs73226260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q24.31		rs73226260-A	NR	3E-11		0.0424	[0.03-0.055] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1511	chr12	121380540	121380541	rs73226260	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs73226260-G	0.9669	6E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1511	chr12	121380543	121380544	rs2649999	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	12q24.31	HNF1A-AS1	rs2649999-T	0.3646	2E-10		0.0498	[0.034-0.066] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1511	chr12	121380543	121380544	rs2649999	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	12q24.31		rs2649999-C	0.346	8E-9		0.92		Affymetrix [15679186] (imputed)	N
1511	chr12	121380543	121380544	rs2649999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q24.31		rs2649999-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1511	chr12	121384494	121384495	rs11065358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs11065358-T	0.3381	5E-10		0.0262565	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1511	chr12	121384494	121384495	rs11065358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs11065358-T	0.3381	2E-10		0.0269138	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1511	chr12	121384494	121384495	rs11065358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	12q24.31		rs11065358-T	0.338132	5E-10		0.0267704	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1511	chr12	121388558	121388559	rs1696359	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	12q24.31		rs1696359-T	0.340882	6E-9		0.0252107	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1511	chr12	121388961	121388962	rs2650000	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.31	HNF1A-AS1	rs2650000-A	0.338514	1E-300		0.0244169	[0.023-0.025] unit decrease	Affymetrix [13995440] (imputed)	N
1511	chr12	121388961	121388962	rs2650000	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs2650000-?	NR	2E-37		0.1175085	[0.1-0.136] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121388961	121388962	rs2650000	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Insulinogenic index	up to 8,229 Finnish ancestry non-diabetic individuals	NA	12q24.31	HNF1A	rs2650000-A	0.455	5E-10		0.076	[0.052-0.1] unit decrease	Illumina [242071]	N
1511	chr12	121388961	121388962	rs2650000	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	12q24.31	LEF1	rs2650000-A	0.45	3E-11	(CRP)	0.4	[0.25-0.55] mmol/l decrease	Illumina [329091]	N
1511	chr12	121388961	121388962	rs2650000	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	12q24.31	HNF1A	rs2650000-A	0.36	2E-8		0.07	[0.03-0.11] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1511	chr12	121392039	121392040	rs11065365	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	12q24.31		rs11065365-A	0.55	2E-10		0.0513	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1511	chr12	121396242	121396243	rs527619704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.31		rs527619704-A	0.004874516	3E-20		0.7054397	[0.56-0.86] unit decrease	Illumina [13429769] (imputed)	N
1511	chr12	121396242	121396243	rs527619704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.31		rs527619704-A	NR	3E-20		0.7054	[0.56-0.86] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1511	chr12	121397874	121397875	rs6489786	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	12q24.31	NR	rs6489786-A	0.3526	7E-19	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1511	chr12	121399501	121399502	rs77929563	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	12q24.31	HNF1A-AS1	rs77929563-A	0.0107	4E-11		0.658	[0.46-0.85] mmHg increase	Affymetrix [NR] (imputed)	N
1511	chr12	121401845	121401846	rs7966322	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	12q24.31		rs7966322-C	0.460065	4E-8		0.0244282	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.31	NR	rs7305618-T	NR	6E-25		0.0305	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs7305618-T	NR	9E-39		0.0367	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs7305618-T	NR	4E-17		0.0237	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs7305618-T	NR	8E-151		0.0736	[0.068-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs7305618-T	NR	3E-217		0.0886	[0.083-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs7305618-?	NR	1E-16		0.07710409	[0.059-0.095] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	21647738	Wu Y	2011-06-07	Inflammation	Genome-wide association with C-reactive protein levels in CLHNS: evidence for the CRP and HNF1A loci and their interaction with exposure to a pathogenic environment.	C-reactive protein	1,709 Filipino ancestry female individuals	NA	12q24.31	HNF1A	rs7305618-T	0.52	1E-8		0.267	[0.18-0.36] unit increase	Affymetrix [2073674] (imputed)	N
1511	chr12	121402931	121402932	rs7305618	21573907	Parra EJ	2011-05-15	Diabetologia	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	European ancestry individuals	12q24.31	HNF1A	rs7305618-C	NR	2E-8		1.14	[1.09-1.20]	Affymetrix [315658]	N
1511	chr12	121403723	121403724	rs7953249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	12q24.31		rs7953249-G	0.410211	4E-9		0.0244662	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	AC079602.1	rs7953249-G	0.410997	7E-16		0.0160949	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs7953249-?	NR	6E-38		0.1065396	[0.09-0.123] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	12q24.31	NR	rs7953249-G	0.417632	3E-7		1.0817573	[1.04973458497305-1.11475700006623]	Illumina [11595112] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	12q24.31	NR	rs7953249-G	0.417632	6E-6		1.0621586	[1.0348111352015-1.09022867520121]	Illumina [11595112] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	12q24.31	NR	rs7953249-G	0.417632	8E-7		1.0811644	[1.04824881016487-1.11511353852335]	Illumina [11595112] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	12q24.31	NR	rs7953249-G	0.417632	5E-10		1.0834533	[1.05604177574809-1.1115762691869]	Illumina [11595112] (imputed)	N
1511	chr12	121403723	121403724	rs7953249	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	12q24.31	TCF1, HNF1A	rs7953249-G	0.44	1E-6	(CRP)			Illumina [588352]	N
1511	chr12	121403723	121403724	rs7953249	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs7953249-G	0.47	3E-11	(DG9)	0.17475872	[0.12-0.23] (zscore) decrease	Illumina [NR]	N
1511	chr12	121403723	121403724	rs7953249	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	12q24.31	OASL, C12orf43, HNF1A	rs7953249-G	0.45	2E-8	(DG7)	0.17	[0.11-0.23] unit decrease	Illumina [~ 300000]	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	9E-9		0.0252685	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373354	2E-8		0.0247295	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	4E-8		0.024114	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	3E-8		0.0243017	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	4E-10		0.0275531	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	4E-8		0.0241232	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404077	121404078	rs368820085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs368820085-CT	0.373365	4E-8		0.0241439	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121404154	121404155	rs7135337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q24.31		rs7135337-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1511	chr12	121404583	121404584	rs1920792	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT5	5,368 Icelandic ancestry individuals	NA	12q24.31		rs1920792-T	0.4674	3E-12		0.127525	[0.092-0.163] unit decrease	Illumina [7506463] (imputed)	N
1511	chr12	121405125	121405126	rs2251468	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	12q24.31	HNF1A	rs2251468-A	0.65	1E-12		0.0512	[0.037-0.065] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
1511	chr12	121405209	121405210	rs10774579	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	AC079602.1	rs10774579-T	0.520753	2E-17		0.0162438	[0.013-0.02] unit increase	Affymetrix [NR] (imputed)	N
1511	chr12	121406369	121406370	rs2243616	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	XLOC_009911, HNF1A-AS1	rs2243616-?		2E-16		0.0292	[0.022-0.036] unit increase	Illumina [31500000] (imputed)	N
1511	chr12	121406369	121406370	rs2243616	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	12q24.31	XLOC_009911, HNF1A-AS1	rs2243616-?	NR	6E-10		0.02495	[0.017-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1511	chr12	121406369	121406370	rs2243616	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	12q24.31	NR	rs2243616-T	0.6464	4E-8		0.0107	[0.0068-0.0146] unit increase	Illumina [NR] (imputed)	N
1511	chr12	121407255	121407256	rs12815613	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	12q24.31	HNF1A, AS1	rs12815613-A	0.6653	6E-9		0.0564	[0.037-0.075] unit decrease	NR [9744772] (imputed)	N
1511	chr12	121407255	121407256	rs12815613	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	12q24.31	HNF1A, C12orf43	rs12815613-A	NR	3E-6		4.654	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1511	chr12	121413026	121413027	rs148608463	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12q24.31		rs148608463-G	0.646593	4E-9		0.0238862	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121413026	121413027	rs148608463	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs148608463-G	0.646626	1E-11		0.0284828	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121413026	121413027	rs148608463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.31	HNF1A-AS1	rs148608463-A	0.353018	5E-29		0.026218541	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1511	chr12	121414914	121414915	rs2255531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.31	HNF1A-AS1	rs2255531-A	0.350416	4E-25		0.024298076	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1511	chr12	121414914	121414915	rs2255531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.31		rs2255531-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1511	chr12	121414914	121414915	rs2255531	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.31	HNF1A-AS1	rs2255531-A	0.3495	4E-16		0.03117565	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1511	chr12	121414914	121414915	rs2255531	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.31	HNF1A-AS1	rs2255531-A	0.3495	3E-10		0.02417885	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1511	chr12	121415208	121415209	rs55931441	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	12q24.31	HNF1A	rs55931441-A	NR	5E-8		1.68	[1.53-1.84]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7139079-G	0.407456	8E-9		0.0226478	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs7139079-G	0.407491	1E-12		0.0292329	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	12q24.31		rs7139079-G	0.40745	8E-28		0.0450513	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q24.31	NR	rs7139079-A	0.592779	5E-28		0.0128703	[0.01-0.015] unit increase	Affymetrix [16585854] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q24.31	NR	rs7139079-A	0.592779	8E-20		0.012527	[0.0097-0.0154] unit increase	Affymetrix [16585866] (imputed)	N
1511	chr12	121415292	121415293	rs7139079	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q24.31	NR	rs7139079-G	0.407287	1E-16		0.0220891	[0.017-0.027] unit increase	Affymetrix [16585745] (imputed)	N
1511	chr12	121415389	121415390	rs2464190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q24.31		rs2464190-C	NR	2E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1511	chr12	121416621	121416622	rs1169289	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	12q24.31		rs1169289-?	NR	1E-9		0.00563777	[0.0038-0.0075] unit increase	NR [NR]	N
1511	chr12	121416621	121416622	rs1169289	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q24.31	NR	rs1169289-G	0.43989500000000004	3E-11		0.0194662	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	12q24.31		rs1169288-C	0.494214	1E-11		0.024149	[0.017-0.031] unit increase	Illumina [13476599] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q24.31		rs1169288-C	NR	2E-27		0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	12q24.31		rs1169288-C	0.494598	1E-11		0.0236524	[0.017-0.03] unit decrease	Illumina [13475706] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12q24.31		rs1169288-C	NR	4E-21		0.0479	[0.038-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q24.31		rs1169288-C	NR	2E-26		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q24.31	HNF1A	rs1169288-C	0.326652	2E-12		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1169288-?		1E-12		0.0323	[0.023-0.041] unit increase	Illumina [31500000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q24.31	HNF1A	rs1169288-?	NR	6E-15		0.0399869	[0.03-0.05] unit increase	Illumina [4804024] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	12q24.31	NR	rs1169288-A	0.684239	3E-76		0.0383025	[0.034-0.042] unit decrease	Affymetrix [15000001]	N
1511	chr12	121416649	121416650	rs1169288	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.31	HNF1A, HNF1A-AS1	rs1169288-?	NR	4E-45		0.0391	[0.034-0.044] unit increase	Affymetrix [5701386] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	12q24.31	ACADS	rs1169288-A	0.603	2E-8	(Cer d18:2/24:1)	0.0983	[0.064-0.133] unit increase	Illumina [~ 47000000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.31	HNF1A	rs1169288-A	0.4958	5E-8	(East Asian)	0.0355	[0.023-0.048] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	12q24.31	NR	rs1169288-?	NR	4E-6		1.796856	[1.03-2.56] unit increase	Illumina [32003504] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	12q24.31	NR	rs1169288-?	NR	3E-7		1.793865	[1.11-2.48] unit increase	Illumina [31808917] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	12q24.31	HNF1A-AS1	rs1169288-C	0.313809	2E-15		0.048448525	[0.037-0.06] unit increase	Affymetrix [7288503] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	12q24.31		rs1169288-A	0.6713	3E-12	(EA)	1.4021	[1.01-1.8] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	12q24.31	HNF1A	rs1169288-?		2E-14		1.0869565	[1.06-1.1]	Affymetrix, Illumina [43000000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	HNF1A	rs1169288-A	0.6937	2E-30		0.0344	[0.029-0.04] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	HNF1A	rs1169288-A	0.6937	1E-27		0.0327	[0.027-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	12q24.31	HNF1A	rs1169288-C	0.313	1E-9				Affymetrix [28000000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q24.31	HNF1A	rs1169288-C	0.337	1E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1511	chr12	121416649	121416650	rs1169288	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	HNF1A	rs1169288-C	0.323	2E-10		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
1511	chr12	121416649	121416650	rs1169288	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q24.31	HNF1A	rs1169288-C	0.337	2E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
1511	chr12	121416649	121416650	rs1169288	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	HNF1A	rs1169288-C	0.323	1E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
1511	chr12	121416649	121416650	rs1169288	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169288-A	NR	6E-16		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169288-A	0.669	7E-12	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169288-A	NR	6E-16		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169288-A	0.669	1E-12	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1169288-?	NR	2E-9		0.02719	[0.018-0.036] unit decrease	Illumina [6108953] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q24.31	HNF1A, HNF1A-AS1	rs1169288-A	0.6725	1E-18		0.049	[0.038-0.06] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q24.31	HNF1A, HNF1A-AS1	rs1169288-A	0.67	8E-19		0.054	[0.042-0.066] unit decrease	Affymetrix [7947838] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	12q24.31	HNF1A	rs1169288-A	0.666	2E-22	(Trans-ethnic initial)	0.0375	[0.03-0.045] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	26174136	Setoh K	2015-07-15	Nat Commun	Three missense variants of metabolic syndrome-related genes are associated with alpha-1 antitrypsin levels.	Serum alpha1-antitrypsin levels	3,294 Japanese ancestry individuals	6,065 Japanese ancestry individuals	12q24.31	HNF1A	rs1169288-C	0.487	2E-12		1.79	[1.3-2.28] mg dl-1 increase	Illumina [6569727] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	HNF1A	rs1169288-C	0.34	6E-21		0.038	[NR] unit increase	NR [NR] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	HNF1A	rs1169288-C	0.34	4E-17		0.032	[NR] unit increase	NR [NR] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	22010049	Middelberg RP	2011-11-01	Hum Mol Genet	Loci affecting gamma-glutamyl transferase in adults and adolescents show age x SNP interaction and cardiometabolic disease associations.	Gamma glutamyl transferase levels	12,526 European ancestry individuals	NA	12q24.31	HNF1A	rs1169288-G	0.31	2E-18		0.132	[0.10-0.16] unit decrease	Illumina [2380486] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	12q24.31	HNF1A	rs1169288-C	0.33	1E-15		1.42	[1.05-1.79] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1511	chr12	121416649	121416650	rs1169288	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	12q24.31	HNF1A	rs1169288-C	0.33	1E-14		1.45	[1.06-1.84] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1511	chr12	121416755	121416756	rs377129682	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	12q24.31		rs377129682-?	NR	1E-14		0.513213	[0.38-0.64] unit increase	NR [9800000] (imputed)	N
1511	chr12	121416827	121416828	rs200442958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	12q24.31		rs200442958-?	NR	6E-10		0.858197	[0.6-1.11] unit increase	NR [9800000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	12q24.31		rs1800574-T	NR	4E-14		0.0429	[0.032-0.054] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	1E-14		0.054	[0.04-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	2E-15		0.0585	[0.044-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	1E-13		0.0543	[0.04-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	5E-94		0.1445	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	2E-10		0.0444	[0.031-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	9E-16		0.0563	[0.043-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	12q24.31	NR	rs1800574-T	NR	1E-15		0.056	[0.042-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.31	HNF1A	rs1800574-T	0.033	3E-14		0.0846	[0.063-0.106] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q24.31	HNF1A	rs1800574-T	0.0314	3E-12		0.080982	[0.058-0.104] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs1800574-T	0.0296	2E-12		1.14	[1.10-1.19]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1511	chr12	121416863	121416864	rs1800574	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q24.31	HNF1A	rs1800574-T	0.033	2E-7		1.1	[1.06-1.15]	Affymetrix, Illumina [247470]	N
1511	chr12	121416863	121416864	rs1800574	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	HNF1A	rs1800574-T	NR	1E-7		1.1	[1.06-1.15]	Affymetrix, Illumina [247470]	N
1511	chr12	121416863	121416864	rs1800574	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q24.31	HNF1A	rs1800574-T	0.033	4E-7		1.11	(1.06-1.16)	Affymetrix, Illumina [247470]	N
1511	chr12	121416863	121416864	rs1800574	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	HNF1A	rs1800574-T	0.029	6E-8		1.11	[1.06-1.15]	Affymetrix, Illumina [247470]	N
1511	chr12	121416987	121416988	rs2244608	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2244608-A	0.681736	7E-11		0.0277565	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	3E-17		0.0217	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	4E-18		0.0222	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	2E-55		0.0402	[0.035-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	3E-23		0.0268	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	3E-111		0.0574	[0.052-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	2E-49		0.0378	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	1E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	5E-489		0.1209	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	4E-38		0.033	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	1E-643		0.1388	[0.13-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	2E-36		0.0324	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs2244608-G	NR	6E-12		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in high fat diet	7,873 European ancestry women	NA	12q24.31	HNF1A	rs2244608-?		9E-7		0.84	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	12q24.31	HNF1A	rs2244608-G	0.35	2E-8		1.05	[1.02-1.07]	Illumina [5167567] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.31	HNF1A	rs2244608-A	0.37470000982284546	2E-13	(women)	0.0344	[0.025-0.044] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	HNF1A	rs2244608-G	NR	3E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	HNF1A	rs2244608-G	NR	2E-25				Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	HNF1A	rs2244608-G	NR	2E-28	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	HNF1A	rs2244608-G	NR	1E-25				Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	HNF1A	rs2244608-G	NR	2E-18		1.355	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	HNF1A	rs2244608-G	NR	1E-19	(EA)	1.693	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	HNF1A	rs2244608-G	NR	4E-12		1.079	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	HNF1A	rs2244608-G	NR	3E-11	(EA)	1.655	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	HNF1A	rs2244608-G	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	HNF1A	rs2244608-G	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	HNF1A	rs2244608-G	NR	7E-6		0.004577	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q24.31	HNF1A, HNF1A-AS1	rs2244608-A	0.6679	7E-19		0.0518	[0.04-0.063] unit decrease	NR [8041861] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	12q24.31	HFN1A	rs2244608-G	0.349	8E-10		1.053	[1.035-1.070]	Affymetrix [9149595] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	12q24.31	HNF1A	rs2244608-G	0.32	2E-8		1.05	[1.03-1.07]	Affymetrix [9061845] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	12q24.31	HNF1A	rs2244608-A	0.661	4E-19	(Trans-ethnic initial)	0.0313	[0.024-0.039] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1511	chr12	121416987	121416988	rs2244608	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.31	HNF1A	rs2244608-A	0.68	8E-8	(women)	0.036	[0.023-0.049] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1511	chr12	121417305	121417306	rs80019595	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q24.31	HNF1A	rs80019595-T	0.027448	2E-8		0.04497	[0.029-0.061] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1511	chr12	121419055	121419056	rs1169286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q24.31		rs1169286-C	0.530857	9E-9		0.0155503	[0.01-0.021] unit increase	Illumina [13479924] (imputed)	N
1511	chr12	121419055	121419056	rs1169286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	12q24.31		rs1169286-C	0.529483	2E-11		0.0225118	[0.016-0.029] unit increase	Illumina [13478792] (imputed)	N
1511	chr12	121419055	121419056	rs1169286	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1169286-?	NR	3E-10		0.02229	[0.015-0.029] unit increase novel	Illumina [6108953] (imputed)	N
1511	chr12	121419870	121419871	rs11065381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.31		rs11065381-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	2E-9		0.0241296	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	3E-8		0.0219574	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	4E-8		0.02223	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	6E-11		0.0258368	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	2E-10		0.0248406	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs1169284-T	0.68568	2E-8		0.0229	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.31		rs1169284-C	NR	6E-34		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1511	chr12	121419925	121419926	rs1169284	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1169284-?	NR	3E-29		0.05766	[0.048-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	3E-10		0.0262392	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	5E-15		0.0326567	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	6E-14		0.0314866	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	5E-22		0.0391475	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	5E-8		0.0228407	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	8E-15		0.0324203	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	4E-13		0.0303259	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	5E-11		0.0275968	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs7979473-A	0.387015	4E-12		0.029351	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs7979473-A	0.387015	3E-11		0.0279927	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	3E-14		0.0313976	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	1E-8		0.0240806	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	2E-9		0.0254349	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	3E-16		0.0341173	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	1E-23		0.0407734	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979473-A	0.38699	2E-12		0.0295123	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	12q24.31		rs7979473-G	NR	6E-20		0.0762	[0.06-0.092] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q24.31		rs7979473-G	NR	9E-732		0.1272	[0.12-0.13] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	12q24.31		rs7979473-A	0.4	3E-22		0.0792	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q24.31	NR	rs7979473-A	0.385355	1E-17		0.017473	[0.013-0.022] unit increase	Affymetrix [16583148] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	12q24.31	HNF1A	rs7979473-?	NR	1E-9	(M_LDL_P)	0.023851078	NR unit decrease	Illumina [609262]	N
1511	chr12	121420259	121420260	rs7979473	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs7979473-?	NR	1E-46		0.1175212	[0.1-0.13] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	12q24.31	HNF1A	rs7979473-A	0.4288	2E-32		0.1156	[0.096-0.135] unit decrease	Illumina [~ 200000]	N
1511	chr12	121420259	121420260	rs7979473	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs7979473-?	NR	3E-126		0.09719	[0.089-0.105] unit increase novel	Illumina [6108953] (imputed)	N
1511	chr12	121420259	121420260	rs7979473	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	12q24.31	HNF1A	rs7979473-A	0.443	1E-10	(AA women)	0.119	[0.082-0.156] unit decrease	Affymetrix [up to 2203609] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	4E-10		0.0262217	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	1E-15		0.0324623	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	7E-24		0.0421681	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	6E-10		0.0232089	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	12q24.31		rs7979478-A	0.38704	2E-15		0.0320021	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	2E-24		0.0428144	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	5E-10		0.0234218	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	2E-10		0.0244853	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	12q24.31		rs7979478-A	0.38704	8E-17		0.0336398	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	12q24.31		rs7979478-A	0.38704	1E-17		0.0341902	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	3E-21		0.0397668	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7979478-A	0.387015	3E-11		0.0251352	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q24.31		rs7979478-G	NR	2E-14		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q24.31		rs7979478-G	NR	8E-683		0.1069	[0.1-0.11] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1511	chr12	121420262	121420263	rs7979478	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	12q24.31	NR	rs7979478-?	NR	3E-15		0.035	[0.026-0.044] unit decrease	Illumina [~ 7800000] (imputed)	N
1511	chr12	121420429	121420430	rs1169282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs1169282-T	NR	1E-13		0.0551	[0.041-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121420429	121420430	rs1169282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs1169282-T	NR	2E-38		0.0962	[0.082-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121420429	121420430	rs1169282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	12q24.31	NR	rs1169282-T	NR	2E-10		0.0476	[0.033-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121420429	121420430	rs1169282	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs1169282-T	NR	3E-47		0.1074	[0.093-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	12q24.31		rs1183910-?	NR	9E-8		0.754	[0.679-0.836]	Affymetrix [7975321] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	12q24.31		rs1183910-?	NR	5E-12		0.7515	[0.6928-0.8151]	Affymetrix [7975321] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1183910-?		5E-141		0.1014	[0.094-0.109] unit increase	Illumina [31500000] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs1183910-?		2E-77		0.0833	[0.074-0.092] unit increase	Illumina [31500000] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs1183910-?	NR	8E-40		0.1223252	[0.1-0.14] unit decrease	Illumina [30861016] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	12q24.31	HNF1A	rs1183910-A	0.3233	3E-18	(HIS)	0.1256	[0.097-0.154] unit decrease	Illumina [~ 200000]	N
1511	chr12	121420806	121420807	rs1183910	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	12q24.31	HNF1A	rs1183910-A	NR	8E-128				NR [2501549] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	12q24.31	HNF1A	rs1183910-A	NR	6E-128				NR [2501749] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	23844046	Dorajoo R	2013-07-02	PLoS One	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NA	12q24.31	HNF1A	rs1183910-G	0.709	4E-12		0.054	[NR] unit increase	Illumina [up to 1745429] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	12q24.31	HNF1A	rs1183910-G	NR	2E-124		0.149	[0.14-0.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1511	chr12	121420806	121420807	rs1183910	19567438	Elliott P	2009-07-01	JAMA	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals	13,615 European ancestry and Indian Asian ancestry Individuals	12q24.31	HNF1A	rs1183910-T	NR	1E-30		13.8	[10.9-16.6] % decrease	Affymetrix, Illumina, Perlegen [~ 1400000] (imputed)	N
1511	chr12	121421991	121421992	rs56156770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs56156770-T	NR	3E-18		0.072	[0.056-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121421991	121421992	rs56156770	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs56156770-T	NR	2E-24		0.0845	[0.068-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121422448	121422449	rs58395715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	12q24.31		rs58395715-T	0.558594	2E-9		0.0233918	[0.016-0.031] unit decrease	Illumina [13474352] (imputed)	N
1511	chr12	121422448	121422449	rs58395715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	83,025 East Asian ancestry individuals	NA	12q24.31		rs58395715-T	0.556655	5E-39		0.0619587	[0.053-0.071] unit increase	Illumina [13470202] (imputed)	N
1511	chr12	121422450	121422465	rs58367757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	12q24.31		rs58367757-T	0.558026	5E-167		0.0962292	[0.089-0.103] unit increase	Illumina [13476165] (imputed)	N
1511	chr12	121423284	121423285	rs11065384	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	12q24.31		rs11065384-?	0.3067	2E-8		0.002884	unit decrease	NR [6200000] (imputed)	N
1511	chr12	121423284	121423285	rs11065384	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	12q24.31	HNF1A	rs11065384-?	NR	6E-10		0.9876	[0.66-1.32] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379416	4E-10		0.0239918	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379436	3E-14		0.031489	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379415	6E-13		0.0281835	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379416	5E-11		0.0251826	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379436	9E-9		0.0235143	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379415	3E-11		0.0250568	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379416	8E-11		0.024274	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7970695-G	0.379416	4E-11		0.0253661	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423375	121423376	rs7970695	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs7970695-G	0.376921	3E-1043		0.144095	[0.14-0.15] unit decrease	NR [NR]	N
1511	chr12	121423658	121423659	rs9738226	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	12q24.31	HNF1A	rs9738226-A	0.38	1E-116		23.0	z-score increase	Affymetrix [4311822] (imputed)	N
1511	chr12	121423658	121423659	rs9738226	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	HNF1A	rs9738226-?		1E-12		0.0287	[0.021-0.037] unit decrease	Illumina [31500000] (imputed)	N
1511	chr12	121423658	121423659	rs9738226	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	12q24.31	NR	rs9738226-G	0.622591	8E-61		0.0193061	[0.017-0.022] unit increase	Affymetrix [16582621] (imputed)	N
1511	chr12	121423658	121423659	rs9738226	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	12q24.31	NR	rs9738226-G	0.622591	5E-54		0.0194123	[0.017-0.022] unit increase	Affymetrix [16582614] (imputed)	N
1511	chr12	121423658	121423659	rs9738226	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	12q24.31	HNF1A	rs9738226-A	0.39	1E-313	(BMI-adjusted)	0.148	[0.14-0.16] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q24.31		rs2393791-T	NR	8E-126		0.0487	[0.045-0.053] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	12q24.31		rs2393791-C	NR	7E-11		0.0766439	[0.054-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q24.31	HNF1A	rs2393791-C	0.379307	5E-202		0.00701934	[0.0066-0.0075] unit increase	Affymetrix [13995440] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	12q24.31	HNF1A	rs2393791-C	0.354	3E-13		0.03	[0.02-0.04] unit increase	Illumina [NR] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	31622379	Best LG	2019-10-17	PLoS One	Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.	C-reactive protein levels	1,892 American Indian ancestry individuals	NA	12q24.31	HNF1A	rs2393791-A	0.409	5E-6		4.59	unit increase (z-score)	Illumina [120972]	N
1511	chr12	121423955	121423956	rs2393791	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs2393791-?	NR	2E-42		0.1145361	[0.098-0.131] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	24763700	Vinayagamoorthy N	2014-04-24	PLoS One	New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.	C-reactive protein levels	7,626 Korean ancestry individuals	903 Korean ancestry individuals	12q24.31	OASL, C12orf43, HNF1A	rs2393791-G	0.479	3E-10		0.122	[NR] unit decrease	Affymetrix [1219546] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	12q24.31	HNF1A	rs2393791-C	0.478	3E-9	(CRP)	0.049	[NR] mg/dl decrease	Affymetrix [1701735] (imputed)	N
1511	chr12	121423955	121423956	rs2393791	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	12q24.31	HNF1A	rs2393791-G	0.48	7E-30		0.0076	[0.0062-0.0090] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	12q24.31		rs2245407-C	0.92967	5E-8		0.04379	[0.028-0.06] unit increase	NR [11722792] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	12q24.31	NR	rs2245407-A	NR	2E-21		0.0453	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs2245407-A	NR	3E-27		0.0492	[0.04-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs2245407-A	NR	7E-14		0.0339	[0.025-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs2245407-A	NR	4E-40		0.0602	[0.051-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121423997	121423998	rs2245407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	12q24.31	NR	rs2245407-A	NR	4E-10		0.0284	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs2393776-G	0.379702	2E-12		0.0279431	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2393776-G	0.379702	6E-22		0.0401141	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2393776-G	0.379702	3E-22		0.0397843	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2393776-G	0.379702	1E-22		0.0403516	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	High-sensitivity C-reactive protein levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	12q24.31	HNF1A	rs2393776-G	0.386	1E-9		0.129	[0.088-0.17] unit decrease	Affymetrix [up to 12642786] (imputed)	N
1511	chr12	121424405	121424406	rs2393776	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in low fat diet	2,306 European ancestry women	NA	12q24.31	HNF1A	rs2393776-?		1E-10		0.65	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424489	121424490	rs2243458	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in visceral obesity (waist-hip ratio)	2,928 European ancestry women	NA	12q24.31	HNF1A	rs2243458-?		4E-8		0.71	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424489	121424490	rs2243458	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in non-obese individuals	7,179 European ancestry women	NA	12q24.31	HNF1A	rs2243458-?		1E-10		0.78	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424489	121424490	rs2243458	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration	10,798 European ancestry women	NA	12q24.31	HNF1A	rs2243458-?		2E-12		0.8	[NR]	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q24.31		rs2393775-G	0.379667	8E-47		0.0605976	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	12q24.31		rs2393775-A	NR	2E-11		0.0928	[0.066-0.12] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in visceral obesity (waist circumference)	4,155 European ancestry women	NA	12q24.31	HNF1A	rs2393775-?		3E-8		0.75	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration in obesity	3,000 European ancestry women	NA	12q24.31	HNF1A	rs2393775-?		2E-6		0.74	NR	Affymetrix, Illumina [21784812] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.31	NR	rs2393775-A	0.622735	3E-17		0.0263801	[0.02-0.033] unit increase	Affymetrix [16577313] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.31	NR	rs2393775-A	0.621911	2E-80		0.0154313	[0.014-0.017] unit increase	Affymetrix [16582909] (imputed)	N
1511	chr12	121424573	121424574	rs2393775	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.31	NR	rs2393775-A	0.621911	8E-61		0.0154749	[0.014-0.017] unit increase	Affymetrix [16582965] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.31		rs7310409-A	0.379914	3E-8		0.023661	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	12q24.31		rs7310409-A	NR	6E-11		0.0768013	[0.054-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs7310409-?	NR	3E-44		0.1155503	[0.099-0.132] unit increase	Illumina [30861016] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	12q24.31	HNF1A	rs7310409-G	0.39	3E-299		0.137	[0.13-0.14] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	12q24.31	HNF1A	rs7310409-A	0.39	8E-269		0.147	[0.14-0.15] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	12q24.31	HNF1A	rs7310409-A	0.386	6E-7		1.11	[1.06-1.15]	Illumina [866891] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	12q24.31	C12orf27, HNF1A	rs7310409-G	0.59	7E-45		6.8	[5.70-7.80] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1511	chr12	121424860	121424861	rs7310409	21196492	Okada Y	2010-12-31	Hum Mol Genet	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	12q24.31	HNF1A	rs7310409-G	0.47	3E-8		0.07	[0.04-0.10] unit increase	Illumina [477784]	N
1511	chr12	121424860	121424861	rs7310409	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	12q24.31	HNF1A	rs7310409-A	NR	7E-17		0.15	[NR] mg/dl decrease	Illumina [336108]	N
1511	chr12	121426477	121426478	rs1169292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs1169292-C	0.689503	4E-14		0.0328141	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426477	121426478	rs1169292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs1169292-C	0.689503	3E-11		0.0290694	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426477	121426478	rs1169292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	12q24.31		rs1169292-C	0.689503	8E-12		0.030447	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426477	121426478	rs1169292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs1169292-C	0.689503	1E-15		0.0345771	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426477	121426478	rs1169292	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs1169292-C	0.689503	2E-8		0.024851	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426477	121426478	rs1169292	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q24.31	HNF1A	rs1169292-C	0.689482	5E-22		0.0217273	[0.017-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1511	chr12	121426593	121426594	rs1169294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	12q24.31		rs1169294-G	0.689908	1E-11		0.0301884	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426593	121426594	rs1169294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs1169294-G	0.689908	2E-12		0.0304273	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426593	121426594	rs1169294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs1169294-G	0.689908	3E-12		0.0302645	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1511	chr12	121426593	121426594	rs1169294	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q24.31	HNF1A	rs1169294-G	0.689913	2E-27		0.0245145	[0.02-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1511	chr12	121426900	121426901	rs12427353	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	12q24.31	HNF1A	rs12427353-G		1E-6		0.141	[0.084-0.198] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1511	chr12	121426900	121426901	rs12427353	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	12q24.31	HNF1A	rs12427353-G		3E-6		0.136	[0.079-0.193] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
1511	chr12	121426900	121426901	rs12427353	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	12q24.31	HNF1A	rs12427353-G	0.77	4E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [2500000] (imputed)	N
1511	chr12	121426900	121426901	rs12427353	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	12q24.31	HNF1A	rs12427353-G	0.794085916842299	7E-8		1.08	[1.05-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1511	chr12	121427652	121427653	rs11065387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs11065387-C	NR	5E-30		0.0897	[0.074-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121427652	121427653	rs11065387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs11065387-C	NR	6E-49		0.116	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121428406	121428407	rs1169296	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	12q24.31	HNF1A	rs1169296-G	NR	3E-7		1.12	[1.07-1.17]	NR [NR]	N
1511	chr12	121428454	121428455	rs1169297	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs1169297-G	0.573082	3E-8		0.0233397	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1511	chr12	121429193	121429194	rs1169299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	12q24.31		rs1169299-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1511	chr12	121429193	121429194	rs1169299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs1169299-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1511	chr12	121429193	121429194	rs1169299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs1169299-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1511	chr12	121429394	121429398	rs201854017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q24.31		rs201854017-C	NR	6E-11		0.0826	[0.058-0.107] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1511	chr12	121430164	121430165	rs780518365	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	12q24.31	HNF1A	rs780518365-G	3.5E-4	1E-9		8.434	[4.26-16.70]	Illumina [32500000] (imputed)	N
1511	chr12	121430164	121430165	rs780518365	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	12q24.31	HNF1A	rs780518365-G	3.5E-4	4E-11		7.052	[3.95-12.60]	Illumina [32500000] (imputed)	N
1511	chr12	121431224	121431225	rs1169300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.31		rs1169300-A	NR	3E-21		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1511	chr12	121431224	121431225	rs1169300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.31		rs1169300-A	NR	2E-16		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1511	chr12	121431224	121431225	rs1169300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q24.31		rs1169300-A	NR	4E-26		0.0214	[0.017-0.025] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1511	chr12	121431299	121431300	rs1169301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs1169301-T	0.341917	7E-31				Affymetrix, Illumina [24653286] (imputed)	N
1511	chr12	121431299	121431300	rs1169301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.31	NR	rs1169301-T	0.295305	5E-31		0.023446	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1511	chr12	121431299	121431300	rs1169301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs1169301-T	0.340815	2E-23				Affymetrix, Illumina [24558453] (imputed)	N
1511	chr12	121431299	121431300	rs1169301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q24.31	NR	rs1169301-T	0.295354	7E-23		0.019867	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1511	chr12	121432116	121432117	rs56348580	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.31	NR	rs56348580-G	0.6958	2E-30		0.0575	[0.048-0.067] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1511	chr12	121432116	121432117	rs56348580	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.31	NR	rs56348580-G	0.7058	1E-27		0.0507	[0.041-0.06] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1511	chr12	121432116	121432117	rs56348580	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs56348580-G	0.6889	2E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1511	chr12	121432117	121432118	rs766982432	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	12q24.31	HNF1A	rs766982432-G	1.7E-4	2E-15		32.085	[13.62-75.63]	Illumina [32500000] (imputed)	N
1511	chr12	121432117	121432118	rs766982432	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	12q24.31	HNF1A	rs766982432-G	1.7E-4	3E-13		19.461	[8.76-43.40]	Illumina [32500000] (imputed)	N
1511	chr12	121432298	121432299	rs55783344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	12q24.31		rs55783344-T	0.233869305	6E-11		0.07601962	[0.053-0.099] unit increase	Illumina [13134967] (imputed)	N
1511	chr12	121432298	121432299	rs55783344	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	12q24.31	HNF1A	rs55783344-T	0.228	5E-6	(Japanese)	1.07	[1.04-1.11]	Illumina [7521072] (imputed)	N
1511	chr12	121434832	121434833	rs2259852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRP	5,368 Icelandic ancestry individuals	NA	12q24.31		rs2259852-A	0.3215	5E-15		0.159759	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1511	chr12	121435474	121435475	rs2464195	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	12q24.31	NR	rs2464195-G	0.63	3E-8		1.0752687	[1.04-1.1]	Illumina [~ 9700000] (imputed)	N
1511	chr12	121435586	121435587	rs2259816	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs2259816-?	NR	2E-37		0.114373	[0.097-0.132] unit decrease	Illumina [30861016] (imputed)	N
1511	chr12	121435586	121435587	rs2259816	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	12q24.31	OASL, C12orf43, HNF1A	rs2259816-T	0.379	3E-10	(HA women)	0.141	[0.092-0.190] unit increase	Affymetrix [up to 2203609] (imputed)	N
1511	chr12	121435586	121435587	rs2259816	19198612	Erdmann J	2009-02-08	Nat Genet	New susceptibility locus for coronary artery disease on chromosome 3q22.3.	Coronary heart disease	1,222 European ancestry cases, 1,298 European ancestry controls	18,185 European ancestry cases, 20,068 European ancestry controls	12q24.31	C12orf43, HNF1A	rs2259816-T	0.36	5E-7		1.08	[1.05-1.11]	Affymetrix [567119]	N
1511	chr12	121436375	121436376	rs1169303	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q24.31	NR	rs1169303-A	0.51	5E-12		0.0126	[0.009-0.0162] unit increase	NR [NR]	N
1511	chr12	121438310	121438311	rs1169306	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	12q24.31	HNF1A, C12orf43	rs1169306-T	0.38	3E-10		0.14	unit increase	Illumina [5270624] (imputed)	N
1511	chr12	121438843	121438844	rs735396	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs735396-G	0.4	5E-10	(FUC-A)	0.16801201	[0.12-0.22] (zscore) decrease	Illumina [NR]	N
1511	chr12	121438843	121438844	rs735396	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs735396-G	0.4	4E-8	(GP15)	0.14734995	[0.095-0.2] (zscore) increase	Illumina [NR]	N
1511	chr12	121438843	121438844	rs735396	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs735396-G	0.4	4E-10	(GP13)	0.16835412	[0.12-0.22] (zscore) increase	Illumina [NR]	N
1511	chr12	121438843	121438844	rs735396	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs735396-G	0.39	8E-12	(DG7)	0.1848085	[0.13-0.24] (zscore) decrease	Illumina [NR]	N
1511	chr12	121438843	121438844	rs735396	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	12q24.31	HNF1A, C12orf43, OASL	rs735396-G	0.39	4E-9	(DG11)	0.15703972	[0.1-0.21] (zscore) increase	Illumina [NR]	N
1511	chr12	121438843	121438844	rs735396	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	12q24.31	OASL, C12orf43, HNF1A	rs735396-G	0.38	4E-8	(DG11)	0.17	[0.11-0.23] unit increase	Illumina [~ 300000]	N
1511	chr12	121439432	121439433	rs1169310	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	12q24.31	NR	rs1169310-?	NR	1E-37		0.1145761	[0.097-0.132] unit decrease	Illumina [30861016] (imputed)	N
1511	chr12	121439432	121439433	rs1169310	18439552	Reiner AP	2008-04-24	Am J Hum Genet	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	12q24.31	HNF1A	rs1169310-A	0.38	2E-8		0.13	[0.08-0.17] mg/l decrease in log(CRP) level	Illumina [317000]	N
1511	chr12	121442669	121442670	rs1169313	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	12q24.31	C12orf43, C12orf27, HNF1A	rs1169313-C	0.38	2E-10	(GGT)	0.01	[0.003-0.007] U/L decrease	Affymetrix, Illumina [up to 496032]	N
1511	chr12	121443115	121443116	rs1169314	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	12q24.31	NR	rs1169314-?	NR	2E-6		1.648186	[0.97-2.32] unit increase	Illumina [31808917] (imputed)	N
1511	chr12	121443115	121443116	rs1169314	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169314-A	NR	6E-11		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121443115	121443116	rs1169314	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169314-A	0.692	4E-9	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121443115	121443116	rs1169314	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169314-A	NR	2E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121443115	121443116	rs1169314	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs1169314-A	0.692	5E-10	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121443115	121443116	rs1169314	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	12q24.31	HNF1A	rs1169314-G	0.3	2E-8		0.037	[0.023-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1511	chr12	121450012	121450013	rs74876709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs74876709-A	NR	6E-19		0.0801	[0.062-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121450012	121450013	rs74876709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs74876709-A	NR	1E-18		0.0795	[0.062-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	12q24.31	NR	rs2264750-?	NR	3E-6		1.614889	[0.94-2.29] unit increase	Illumina [31808917] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	12q24.31	C12orf43	rs2264750-T	0.3861	6E-20		0.0066	[0.0052-0.008] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs2264750-C	NR	7E-11		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs2264750-C	0.692	4E-9	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs2264750-C	NR	2E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs2264750-C	0.692	6E-10	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1511	chr12	121450164	121450165	rs2264750	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	12q24.31	HNF1A	rs2264750-T	0.3	7E-11		0.042	[0.03-0.054] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1511	chr12	121450880	121450881	rs73214144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs73214144-A	NR	2E-10		0.0225	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121450880	121450881	rs73214144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs73214144-A	NR	8E-25		0.0364	[0.03-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121451149	121451150	rs11611673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs11611673-G	NR	1E-11		0.0519	[0.037-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121451149	121451150	rs11611673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs11611673-G	NR	1E-24		0.0783	[0.063-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121451149	121451150	rs11611673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs11611673-G	NR	5E-33		0.0915	[0.077-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121454621	121454622	rs1182933	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	12q24.31	HNF1A	rs1182933-T		2E-23		0.024	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1511	chr12	121454621	121454622	rs1182933	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	12q24.31	HNF1A	rs1182933-T	0.3	3E-7		1.11	[1.07 - 1.15]	Illumina [11381182] (imputed)	N
1511	chr12	121454621	121454622	rs1182933	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	12q24.31	C12orf43	rs1182933-T	0.2959	6E-10		0.02404914	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1511	chr12	121456615	121456616	rs61953351	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q24.31	OASL	rs61953351-T	0.249902347563897	2E-14		0.07	[0.052-0.088] unit decrease	NR [5035015] (imputed)	N
1511	chr12	121458399	121458400	rs12819210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs12819210-T	NR	3E-14		0.0233	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121458399	121458400	rs12819210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs12819210-T	NR	4E-52		0.0466	[0.041-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121458399	121458400	rs12819210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs12819210-T	NR	5E-84		0.0596	[0.054-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121460685	121460686	rs7957197	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q24.31	HNF1A	rs7957197-A	0.1988	3E-9	(EA)	0.0766	[0.051-0.102] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121460685	121460686	rs7957197	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q24.31	HNF1A	rs7957197-A	0.1988	1E-9		0.075	[0.051-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1511	chr12	121460685	121460686	rs7957197	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	12q24.31	HNF1A	rs7957197-T		2E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [2426886] (imputed)	N
1511	chr12	121462138	121462139	rs2259883	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	12q24.31	OASL	rs2259883-C	0.54	2E-71		0.074	[0.066-0.082] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1511	chr12	121463287	121463288	rs2708081	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q24.31	Intergenic	rs2708081-T	0.5158	3E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1511	chr12	121470977	121470978	rs73214164	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.31	NR	rs73214164-T	0.802206	5E-22		0.00989366	[0.0078-0.012] unit increase	Affymetrix [16582909] (imputed)	N
1511	chr12	121470977	121470978	rs73214164	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.31	NR	rs73214164-T	0.802206	3E-13		0.00852522	[0.0062-0.0108] unit increase	Affymetrix [16582965] (imputed)	N
1511	chr12	121471336	121471337	rs3213545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.31	OASL	rs3213545-A	0.282906	5E-24		0.025045399	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1511	chr12	121471336	121471337	rs3213545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.31	OASL	rs3213545-A	0.282887	1E-18		0.021834038	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1511	chr12	121471336	121471337	rs3213545	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	12q24.31	NR	rs3213545-A	0.289	1E-6		0.015932282	[0.0096-0.0223] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1511	chr12	121471336	121471337	rs3213545	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	12q24.31	OASL	rs3213545-A	0.30	4E-15	(GGT)	0.121	[0.092-0.150] units/l decrease	Illumina [NR] (imputed)	N
1511	chr12	121481638	121481639	rs1796419	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	12q24.31	OASL	rs1796419-?	NR	4E-30	(butyrylcarnitine)	0.1077	[NR] unit increase	Affymetrix [655658]	N
1511	chr12	121484375	121484376	rs183553104	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs183553104-A	0.979768	2E-15		0.057666	[0.043-0.072] unit decrease	NR [NR]	N
1511	chr12	121488518	121488519	rs3850515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs3850515-G	NR	2E-9		0.0561	[0.038-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr12	121488518	121488519	rs3850515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs3850515-G	NR	1E-9		0.0564	[0.038-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121488518	121488519	rs3850515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs3850515-G	NR	2E-12		0.0654	[0.047-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr12	121501460	121501461	rs28638142	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs28638142-A	0.0442	3E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1511	chr12	121503135	121503136	rs2859400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs2859400-G	NR	5E-16		0.0259	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121540530	121540531	rs1794898	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q24.31	OASL, P2RX7	rs1794898-G	0.16	6E-12		6.88	z-score increase	Affymetrix [4312306] (imputed)	N
1512	chr12	121557375	121557376	rs187353341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs187353341-T	NR	2E-9		0.0531	[0.036-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121557375	121557376	rs187353341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs187353341-T	NR	6E-13		0.0637	[0.046-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121559409	121559410	rs74663951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs74663951-A	NR	5E-16		0.0628	[0.048-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121559409	121559410	rs74663951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs74663951-A	NR	6E-11		0.0507	[0.035-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121577846	121577847	rs672140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs672140-C	NR	6E-25		0.0447	[0.036-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121577846	121577847	rs672140	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs672140-C	NR	1E-19		0.0394	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121579023	121579024	rs17434647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs17434647-G	NR	7E-11		0.0238	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121579023	121579024	rs17434647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs17434647-G	NR	2E-52		0.0557	[0.048-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121579023	121579024	rs17434647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs17434647-G	NR	1E-53		0.0565	[0.049-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121595452	121595453	rs78595509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.31		rs78595509-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1512	chr12	121600237	121600238	rs28360447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs28360447-A	NR	1E-12		0.0622	[0.045-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121600237	121600238	rs28360447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs28360447-A	NR	3E-10		0.0553	[0.038-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121601747	121601748	rs113838402	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs113838402-T	NR	6E-36		0.0936	[0.079-0.108] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121601747	121601748	rs113838402	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs113838402-T	NR	9E-11		0.0483	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121605372	121605373	rs7958316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs7958316-A	NR	8E-10		0.052	[0.035-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121605372	121605373	rs7958316	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs7958316-G	0.979832	1E-13		0.0543586	[0.04-0.069] unit increase	NR [NR]	N
1512	chr12	121613228	121613229	rs28360457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs28360457-A	NR	7E-11		0.0583	[0.041-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121613228	121613229	rs28360457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs28360457-A	NR	4E-17		0.0754	[0.058-0.093] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr12	121614226	121614227	rs73220272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs73220272-C	NR	4E-15		0.0335	[0.025-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121614226	121614227	rs73220272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs73220272-C	NR	4E-10		0.0267	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1512	chr12	121622303	121622304	rs3751143	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs3751143-A	0.822562	8E-14		0.0196286	[0.014-0.025] unit increase	NR [NR]	N
1512	chr12	121622303	121622304	rs3751143	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	12q24.31	P2RX7	rs3751143-C	0.18	4E-6	(IL8)			Illumina [588352]	N
1512	chr12	121626364	121626365	rs75497300	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs75497300-G	0.981417	5E-12		0.0518838	[0.037-0.067] unit decrease	NR [NR]	N
1512	chr12	121627267	121627268	rs11615992	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.31	NR	rs11615992-?	NR	3E-8		1.068125	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1512	chr12	121632159	121632160	rs139429176	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	12q24.31	P2RX7, HNF1A	rs139429176-C	0.988135	1E-8		0.07065	[0.046-0.095] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1513	chr12	121641022	121641023	rs182478131	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	12q24.31	NR	rs182478131-C		7E-6		0.5023	[0.29-0.72] SD units decrease	NR [10700000] (imputed)	N
1513	chr12	121641508	121641509	rs1169721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs1169721-G	NR	2E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121641508	121641509	rs1169721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs1169721-G	NR	2E-14		0.0222	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr12	121641508	121641509	rs1169721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs1169721-G	NR	1E-14		0.0226	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr12	121660507	121660508	rs145935941	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q24.31	P2RX4	rs145935941-A	0.013911055752115	3E-6	(G_Odoribacter_HB)	1.14767	[0.67-1.63] unit decrease	Illumina [7711310] (imputed)	N
1513	chr12	121665852	121665853	rs2567992	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	12q24.31	P2RX4, CAMKK2	rs2567992-?	NR	4E-6		1.808068	[1.405743-2.325539]	Illumina [at least 4483243] (imputed)	N
1513	chr12	121666475	121666476	rs3815989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs3815989-T	NR	9E-13		0.0267	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr12	121669267	121669268	rs77289077	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs77289077-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1513	chr12	121669267	121669268	rs77289077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs77289077-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1513	chr12	121671260	121671261	rs7961979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.31	NA	rs7961979-A	0.1314	7E-12		0.0177	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1513	chr12	121671260	121671261	rs7961979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q24.31	NA	rs7961979-A	0.1314	7E-12		0.0177	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1513	chr12	121673181	121673182	rs75089355	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs75089355-G	NR	7E-20		0.0309	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121682050	121682051	rs2686340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs2686340-C	NR	5E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121682050	121682051	rs2686340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs2686340-C	NR	6E-18		0.0257	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121686928	121686929	rs3794205	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		12q24.31	CAMKK2	rs3794205-G	NR	4E-8		1.07	[1.04-1.10]	Affymetrix, Illumina [1918233] (imputed)	N
1513	chr12	121687014	121687015	rs3794204	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs3794204-T	0.823199	3E-31		0.0311603	[0.026-0.036] unit increase	NR [NR]	N
1513	chr12	121688025	121688026	rs1169809	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q24.31	NR	rs1169809-A	0.3071	3E-7		0.0101	[0.0062-0.014] unit increase	NR [~ 27400000] (imputed)	N
1513	chr12	121689199	121689200	rs35113167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs35113167-C	NR	1E-10		0.0502	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr12	121701432	121701433	rs117211511	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs117211511-G	0.95635	7E-15		0.0389331	[0.029-0.049] unit decrease	NR [NR]	N
1513	chr12	121704149	121704150	rs80341247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs80341247-A	NR	6E-25		0.0425	[0.034-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121704149	121704150	rs80341247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs80341247-A	NR	7E-22		0.0397	[0.032-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121707035	121707036	rs1653607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs1653607-T	NR	6E-20		0.0358	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121707035	121707036	rs1653607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	12q24.31	NR	rs1653607-T	NR	1E-14		0.0302	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr12	121724430	121724431	rs148059420	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs148059420-T	0.979013	7E-12		0.054181	[0.039-0.07] unit increase	NR [NR]	N
1513	chr12	121733254	121733255	rs12425953	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs12425953-T	0.963747	2E-10		0.0355705	[0.025-0.047] unit increase	NR [NR]	N
1513	chr12	121754716	121754717	rs2668244	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs2668244-C	0.103187	4E-10		0.0217903	[0.015-0.029] unit decrease	NR [NR]	N
1513	chr12	121756083	121756084	rs13141	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs13141-A	0.0101	2E-12		0.49544096	[0.36-0.64] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1513	chr12	121756083	121756084	rs13141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs13141-?	NR	6E-23				NR [~ 8900000] (imputed)	N
1514	chr12	121781488	121781489	rs116961756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs116961756-A	NR	1E-9		0.0683	[0.046-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr12	121829206	121829207	rs59190874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	12q24.31		rs59190874-T	NR	2E-9		0.0369	[0.025-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1514	chr12	121876557	121876558	rs10444491	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	12q24.31	KDM2B	rs10444491-C	0.394125	3E-8		0.04495562	[0.029-0.061] unit decrease	Affymetrix [7288503] (imputed)	N
1514	chr12	121876557	121876558	rs10444491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.31		rs10444491-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1514	chr12	121877183	121877184	rs530764831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q24.31	KDM2B	rs530764831-C	0.461827	5E-12		0.015635481	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1514	chr12	121882394	121882395	rs73224262	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	HNF1A	rs73224262-T	0.0068	9E-7		1.24	[1.14-1.34]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1514	chr12	121893625	121893626	rs6489811	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	12q24.31	KDM2B	rs6489811-A	0.4665	3E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1515	chr12	121907335	121907336	rs7962128	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	12q24.31	NR	rs7962128-A	NR	4E-8		1.02	[1.01-1.03]	NR [NR] (imputed)	N
1515	chr12	121907912	121907913	rs74959315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	12q24.31		rs74959315-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1515	chr12	121907912	121907913	rs74959315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q24.31	KDM2B	rs74959315-G	0.483639	2E-10		0.014249329	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr12	121911601	121911602	rs10849891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.31		rs10849891-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1515	chr12	121920879	121920880	rs11065589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs11065589-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1515	chr12	121929054	121929055	rs61953500	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.31	MIR7107	rs61953500-G	0.926863	8E-16		0.00801166	[0.006-0.01] unit decrease	Affymetrix [13995440] (imputed)	N
1515	chr12	121938184	121938185	rs10849893	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	12q24.31	FBXL10	rs10849893-C	0.6019	2E-6		1.872E-4	[-0.00128-0.00166] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1515	chr12	121938184	121938185	rs10849893	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	12q24.31	FBXL10	rs10849893-C	0.6036	6E-7		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1515	chr12	121961946	121961947	rs28644184	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	12q24.31		rs28644184-?	NR	3E-6		0.02	[0.01-0.02] unit increase	Illumina [7066534] (imputed)	N
1515	chr12	121966675	121966676	rs60370741	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	12q24.31	KDM2B	rs60370741-C	0.461998	7E-10		0.049962807	[0.034-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
1515	chr12	121973316	121973317	rs28520411	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	12q24.31	KDM2B	rs28520411-A	0.459707	6E-10		0.037573542	[0.026-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
1515	chr12	121988898	121988899	rs28663167	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.31		rs28663167-T	0.45	5E-11		6.58	z score increase	Affymetrix [9061022] (imputed)	N
1515	chr12	121992976	121992977	rs76990798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs76990798-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1515	chr12	122011597	122011598	rs181617194	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.31	KDM2B	rs181617194-T	0.958742	2E-9		0.0226623	[0.015-0.03] unit increase	Affymetrix [12370749]	N
1515	chr12	122011597	122011598	rs181617194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs181617194-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1515	chr12	122011597	122011598	rs181617194	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12q24.31	KDM2B	rs181617194-T	0.9588	1E-9		0.005	[0.0034-0.0066] unit decrease	Affymetrix [15275733] (imputed)	N
1516	chr12	122079274	122079275	rs782472239	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	12q24.31	ORAI1	rs782472239-?	NR	9E-7				Illumina [83898]	N
1516	chr12	122116392	122116393	rs2720041	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	12q24.31	NR	rs2720041-T	0.3753	5E-6		0.0093	[0.0054-0.0132] unit increase	NR [~ 27400000] (imputed)	N
1516	chr12	122134414	122134415	rs2954111	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	12q24.31	NR	rs2954111-C	0.36145000000000005	3E-10		0.0166682	[0.012-0.022] unit increase	Affymetrix [16585745] (imputed)	N
1516	chr12	122140845	122140846	rs2720024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.31	NR	rs2720024-T	0.368498	3E-11		0.013062	[0.0092-0.0169] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1516	chr12	122152254	122152255	rs118128493	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	TMEM120B	rs118128493-C	0.946295	5E-8		0.0246258	[0.016-0.033] unit increase	Affymetrix [NR] (imputed)	N
1516	chr12	122154628	122154629	rs2942375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs2942375-T	0.3408	3E-8	(conditional-joint)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr12	122169883	122169884	rs2954114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs2954114-A	0.468	9E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr12	122169883	122169884	rs2954114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs2954114-A	0.468	3E-10	(MTAG)	0.0083	[0.0058-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1517	chr12	122172423	122172424	rs34933970	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.31		rs34933970-A	0.475	8E-23				Affymetrix [10369434] (imputed)	N
1517	chr12	122177321	122177322	rs2669170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	TMEM120B	rs2669170-G	0.448449	4E-44		0.031498317	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122184723	122184724	rs12814021	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs12814021-T	0.523	1E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1517	chr12	122186267	122186268	rs28651018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.31	TMEM120B	rs28651018-T	0.550336	1E-10		0.014873384	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122186316	122186317	rs28655666	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	12q24.31	intergenic	rs28655666-?	NR	2E-9		0.00691806	[0.0047-0.0092] unit increase	Affymetrix [NR] (imputed)	N
1517	chr12	122186316	122186317	rs28655666	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	12q24.31	ORAI1	rs28655666-A	0.455747	6E-10		6.2	z score decrease	NR [10847151] (imputed)	N
1517	chr12	122191489	122191490	rs10840614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q24.31		rs10840614-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1517	chr12	122208965	122208966	rs28685863	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	12q24.31		rs28685863-?	NR	5E-6		0.7340212	[0.42-1.05] unit decrease	Illumina [9901720] (imputed)	N
1517	chr12	122208967	122208968	rs11608693	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11608693-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBEGF	5,362 Icelandic ancestry individuals	NA	12q24.31		rs11553699-G	0.1182	2E-14		0.220829	[0.16-0.28] unit increase	Illumina [7506463] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	12q24.31	NR	rs11553699-G	0.0419329	1E-43		0.0445	[0.038-0.051] unit increase	Affymetrix [23037915] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	12q24.31		rs11553699-G	NR	5E-214		0.1098	[0.1-0.12] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	12q24.31		rs11553699-G	0.102239	6E-12		4.262064	[3.05-5.48] unit decrease	NR [NR]	N
1517	chr12	122216909	122216910	rs11553699	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	12q24.31		rs11553699-A	0.1362	5E-17		0.2044	[0.16-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	12q24.31		rs11553699-A	0.088	2E-26		0.375	[0.31-0.44] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	12q24.31		rs11553699-A	0.0231	6E-7		0.3232	[0.2-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	12q24.31		rs11553699-A	0.88	2E-10		0.0932	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.135	3E-22		0.033373035	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.134991	7E-17		0.028696338	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.129684	9E-196		0.108365394	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.129691	2E-212		0.109295495	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.129678	4E-127		0.083988	[0.077-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.12969	5E-2433		0.38545203	[0.38-0.39] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.13502	4E-13		0.024759892	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.135017	3E-10		0.02143169	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11553699-G	0.126176	2E-175				Affymetrix, Illumina [24588908] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q24.31	NR	rs11553699-G	0.130515	2E-178		0.082471	[0.077-0.088] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	12q24.31	NR	rs11553699-G	0.0557448	8E-21		0.35692	[0.28-0.43] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	2,810 Hispanic or Latin American individuals	NA	12q24.31	NR	rs11553699-A	0.909626335	3E-14		0.3759	[0.28-0.47] SD units decrease	Affymetrix, Illumina [24878602] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	12q24.31	NR	rs11553699-A	0.982992	2E-9		0.36427	[0.25-0.48] SD units decrease	Affymetrix, Illumina [36042313] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.31		rs11553699-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.31	TMEM120B	rs11553699-G	0.145	4E-12	(Heparin-binding EGF-like growth factor, HBEGF.14094.29.3)	0.26	[0.18-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	12q24.31	WDR66	rs11553699-?	0.1	7E-20		0.048	[NR] fL increase	NR [16536512] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.1404	3E-9		0.03250539	[0.022-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.1352	6E-81		0.1084553	[0.097-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.1353	1E-184		0.1621033	[0.15-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.1364	1E-45		0.08012949	[0.069-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122216909	122216910	rs11553699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q24.31	TMEM120B, RHOF	rs11553699-G	0.1353	1E-925		0.3657355	[0.35-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122216935	122216936	rs12312375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q24.31		rs12312375-C	NR	3E-15		0.0224	[0.017-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1517	chr12	122216935	122216936	rs12312375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.31		rs12312375-C	NR	1E-8		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1517	chr12	122218488	122218489	rs7136373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.31	TMEM120B, RHOF	rs7136373-G	0.182079	8E-11		0.018856293	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122219786	122219787	rs9165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q24.31		rs9165-C	NR	3E-13		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.31	TMEM120B	rs9165-C	0.690334	9E-15		0.018874802	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.31	TMEM120B	rs9165-C	0.687966	7E-17		0.021250576	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.31	TMEM120B	rs9165-C	0.690347	1E-13		0.018173425	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q24.31	NR	rs9165-C	0.687992	2E-15		0.016507	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs9165-C	0.678376	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
1517	chr12	122219786	122219787	rs9165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.31	NR	rs9165-C	0.688393	7E-14		0.016162	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1517	chr12	122219786	122219787	rs9165	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.31	TMEM120B	rs9165-C	0.686	2E-26		0.04331828	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1517	chr12	122227833	122227834	rs34818942	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean platelet volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	12q24.31	WDR66, RHOF	rs34818942-T	0.0729	8E-11		0.254	[0.18-0.33] fL increase	Illumina [498916]	N
1517	chr12	122231433	122231434	rs776274227	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	12q24.31		rs776274227-?	NR	1E-13		0.391832	[0.28-0.5] unit increase	NR [9800000] (imputed)	N
1517	chr12	122234088	122234089	rs1168663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.31		rs1168663-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1517	chr12	122245350	122245351	rs33988047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.31		rs33988047-T	NR	3E-14		0.0225	[0.017-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1517	chr12	122247113	122247114	rs77408535	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.31		rs77408535-G	0.971	3E-17				Affymetrix [10369434] (imputed)	N
1517	chr12	122249047	122249048	rs895953	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and triglyceride levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	12q24.31	SET1B	rs895953-T	0.81	2E-9				NR [NR]	N
1517	chr12	122249047	122249048	rs895953	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and HDL cholesterol levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	12q24.31	SET1B	rs895953-T	0.81	9E-8				NR [NR]	N
1517	chr12	122249047	122249048	rs895953	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	12q24.31	SETD1B	rs895953-?	NR	3E-10				NR [1800000]	N
1517	chr12	122250490	122250491	rs2019562	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	12q24.31	NR	rs2019562-?	NR	2E-6		1.2486	[1.16-1.34]	Illumina [NR] (imputed)	N
1517	chr12	122250490	122250491	rs2019562	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	12q24.31	NR	rs2019562-?	NR	4E-7		1.3036	[1.2-1.41]	Illumina [NR] (imputed)	N
1517	chr12	122250490	122250491	rs2019562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs2019562-T	0.833149	8E-14				Affymetrix, Illumina [24649327] (imputed)	N
1517	chr12	122254712	122254713	rs7974348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.31		rs7974348-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1517	chr12	122258117	122258118	rs117255102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs117255102-T	0.927725	4E-10				Affymetrix, Illumina [22063850] (imputed)	N
1517	chr12	122268436	122268436	rs34128886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	SETD1B	rs34128886-CT	0.202785	2E-10		0.01799225	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122268695	122268696	rs11043207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.31	SETD1B	rs11043207-G	0.20722	5E-25		0.029005414	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122268695	122268696	rs11043207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.31	SETD1B	rs11043207-G	0.206581	1E-12		0.01973133	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1517	chr12	122271129	122271130	rs12823194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.31		rs12823194-A	NR	4E-11		0.0201	[0.014-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1517	chr12	122271129	122271130	rs12823194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q24.31	NR	rs12823194-A	0.188449	8E-18		0.021362	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1517	chr12	122271129	122271130	rs12823194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs12823194-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1517	chr12	122276254	122276255	rs4298948	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.31	HPD	rs4298948-G	0.025	3E-6	(Vigorous activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1517	chr12	122280691	122280692	rs12820413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs12820413-T	0.169975	5E-15				Affymetrix, Illumina [20825802] (imputed)	N
1517	chr12	122282515	122282516	rs144241592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs144241592-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1518	chr12	122301043	122301044	rs11043221	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	HPD	rs11043221-A	0.701528	4E-10		0.0131113	[0.009-0.0172] unit decrease	Affymetrix [NR] (imputed)	N
1518	chr12	122302585	122302586	rs11614623	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	HPD	rs11614623-C	0.803682	2E-11	(2-hydroxyphenylacetate)	0.191	[0.14-0.25] unit increase	Illumina [13039987] (imputed)	N
1518	chr12	122302585	122302586	rs11614623	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12q24.31	HPD	rs11614623-C	0.803682	2E-11	(2-hydroxyphenylacetate)	0.191	[0.14-0.25] unit increase	Illumina [13039987] (imputed)	N
1518	chr12	122318722	122318723	rs4760099	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	12q24.31	HPD	rs4760099-A	0.15	2E-80	(2-hydroxyisobutyrate)	0.1636	[NR] unit decrease	Affymetrix [620456]	N
1518	chr12	122318984	122318985	rs6486781	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs6486781-A	0.4336	3E-9		0.13367829	[0.089-0.179] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1518	chr12	122325819	122325820	rs3847694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31	RP11-87C12.2, PSMD9	rs3847694-G	0.51084	9E-15		0.0177607	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1518	chr12	122329477	122329478	rs1168674	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	PSMD9	rs1168674-C	0.204511	8E-11	(beta-hydroxyisovalerate)	0.188	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
1518	chr12	122329477	122329478	rs1168674	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12q24.31	PSMD9	rs1168674-C	0.204511	8E-11	(beta-hydroxyisovalerate)	0.188	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
1518	chr12	122334755	122334755	rs201718356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.31	RP11-87C12.2, PSMD9	rs201718356-AG	0.519942	2E-9		0.013353128	[0.009-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1518	chr12	122342963	122342964	rs7314056	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	12q24.31	PSMD9	rs7314056-C	0.13	4E-16	(1.3625, 2-Hydroxyisobutyrate)	0.44	[NR] unit decrease	Illumina [713870] (imputed)	N
1518	chr12	122346033	122346034	rs7132055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.31	NR	rs7132055-T	0.485328	1E-27		0.019822	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1518	chr12	122346051	122346052	rs895960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs895960-A	0.202	5E-8	(MTAG)	0.0089	[0.0058-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1518	chr12	122347611	122347612	rs1720035	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.31	Intergenic	rs1720035-T	0.1957	2E-8	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1518	chr12	122349057	122349058	rs2688412	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12q24.31	HPD	rs2688412-A	0.13	3E-11	(4-hydroxyphenylpyruvate)	0.533	[0.38-0.69] unit increase	Illumina [7750367] (imputed)	N
1518	chr12	122357047	122357049	rs374750909	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	AC069503.2	rs374750909-A	0.188	6E-16		0.0202	[0.015-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1518	chr12	122362431	122362432	rs10743187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs10743187-A	0.582696	6E-407				Affymetrix, Illumina [17210439] (imputed)	N
1518	chr12	122363780	122363781	rs1720067	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	WDR66	rs1720067-T	0.197196	2E-19	(4-hydroxyphenylpyruvate)	0.264	[0.21-0.32] unit increase	Illumina [13039987] (imputed)	N
1518	chr12	122363780	122363781	rs1720067	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	12q24.31	WDR66	rs1720067-T	0.197196	2E-19	(4-hydroxyphenylpyruvate)	0.264	[0.21-0.32] unit increase	Illumina [13039987] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	12q24.31		rs7961894-?	0.1154	3E-9		0.004352	unit increase	NR [6200000] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	12q24.31		rs7961894-?	0.1154	1E-8		0.009857	unit increase	NR [6200000] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean platelet volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	12q24.31	DOK6, CD226	rs7961894-T	0.1024	3E-11		0.2221	[0.16-0.29] fL increase	Illumina [498916]	N
1518	chr12	122365582	122365583	rs7961894	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	12q24.31	TMEM120B, SETD1B, PSMD9, BCL7A, WDR66	rs7961894-T	0.89	6E-38		0.31	[NR] unit decrease	Illumina [476395]	N
1518	chr12	122365582	122365583	rs7961894	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	12q24.31	WDR66	rs7961894-C	NR	1E-10		3.923	[2.73-5.12] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	12q24.31	WDR66	rs7961894-T	NR	1E-103		0.03	[0.028-0.032] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	12q24.31	WDR66	rs7961894-T	NR	3E-44		0.03	[0.027-0.035] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1518	chr12	122365582	122365583	rs7961894	19110211	Meisinger C	2008-12-24	Am J Hum Genet	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	12q24.31	WDR66	rs7961894-A	0.11	7E-48		0.03	[0.03-0.04] per log fl increase	Affymetrix [335152]	N
1518	chr12	122369484	122369485	rs11615745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.31	WDR66	rs11615745-T	0.020201	2E-10		0.050700027	[0.035-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1518	chr12	122381317	122381323	rs202054109	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	12q24.31	NR	rs202054109-G	0.02845	1E-6		0.4414	[0.26-0.62] unit decrease	Illumina [10677593] (imputed)	N
1518	chr12	122381426	122381427	rs189392453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	WDR66	rs189392453-A	NR	2E-11		0.0381937	[0.027-0.049] unit increase	Affymetrix [319769] (imputed)	N
1518	chr12	122381426	122381427	rs189392453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	WDR66	rs189392453-A	NR	3E-11		0.0379033	[0.027-0.049] unit increase	Affymetrix [319769] (imputed)	N
1518	chr12	122381426	122381427	rs189392453	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs189392453-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1518	chr12	122382178	122382179	rs1667586	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.31	NR	rs1667586-?	NR	6E-7		5.006	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1518	chr12	122395776	122395777	rs830124	21572414	Suhre K	2011-05-15	Nat Genet	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry male individuals	1,862 European ancestry individuals	12q24.31	WDR66, HPD	rs830124-A	0.152	1E-46	(2-Hydroxyisobutyrate concentration)			Affymetrix [645249]	N
1518	chr12	122397475	122397476	rs493519	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	12q24.31	WDR66	rs493519-T	0.13	1E-18	(2-hydroxyisobutyrate)	0.036	[0.028-0.044] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1518	chr12	122399172	122399173	rs11615667	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q24.31		rs11615667-C	0.884	9E-45				Affymetrix [10369434] (imputed)	N
1518	chr12	122399172	122399173	rs11615667	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.31		rs11615667-C	0.884	4E-93				Affymetrix [10369434] (imputed)	N
1518	chr12	122399172	122399173	rs11615667	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	12q24.31	NR	rs11615667-A	0.09046	5E-11		0.0267851	[0.019-0.035] unit increase	Affymetrix [3505788] (imputed)	N
1518	chr12	122401500	122401501	rs1169072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs1169072-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1518	chr12	122405911	122405912	rs1169081	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q24.31	WDR66, MLXIP	rs1169081-G	0.704	3E-10		0.0122	[0.0085-0.0159] unit increase	Illumina [246328]	N
1518	chr12	122416253	122416254	rs1169078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.31		rs1169078-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1518	chr12	122416332	122416333	rs145987962	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs145987962-C	0.953522	2E-9		0.0311089	[0.021-0.041] unit increase	NR [NR]	N
1519	chr12	122426642	122426643	rs11043280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q24.31	WDR66	rs11043280-C	0.4898	8E-177		0.1026036	[0.096-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr12	122429653	122429654	rs1169075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	12q24.31		rs1169075-A	0.118346	1E-11		0.0428944	[0.03-0.055] unit increase	NR [11722792] (imputed)	N
1519	chr12	122458636	122458637	rs1916333	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	12q24.31	HPD	rs1916333-C	0.15	7E-78	(1.345 ppm/7.664 ppm)	0.1691	[NR] unit decrease	Affymetrix [620456]	N
1519	chr12	122461565	122461566	rs7954584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	12q24.31	BCL7A	rs7954584-A	0.5562	2E-9		0.02133074	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1519	chr12	122468755	122468756	rs59397548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.31		rs59397548-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1519	chr12	122469394	122469395	rs7957207	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	12q24.31	BCL7A	rs7957207-T	0.049	4E-6		2.01	[1.493-2.706]	Affymetrix, Illumina [14074516] (imputed)	N
1519	chr12	122471961	122471962	rs147203669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	BCL7A	rs147203669-C	NR	3E-8		0.0299064	[0.019-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1519	chr12	122471961	122471962	rs147203669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs147203669-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122475719	122475720	rs59586951	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	12q24.31		rs59586951-G	0.706	3E-14				Affymetrix [10369434] (imputed)	N
1519	chr12	122479307	122479308	rs78296744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs78296744-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122483835	122483836	rs10840645	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs10840645-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122484293	122484294	rs1916334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.31	NR	rs1916334-A	0.195667	3E-10		0.014835	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1519	chr12	122485388	122485389	rs144713920	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs144713920-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122486208	122486209	rs1916332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.31	NR	rs1916332-A	NR	1E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1519	chr12	122488013	122488014	rs1976859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.31		rs1976859-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1519	chr12	122488211	122488211	rs34242364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	BCL7A	rs34242364-GT	NR	4E-8		0.0170475	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
1519	chr12	122488211	122488211	rs34242364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	BCL7A	rs34242364-GT	0.486166	9E-16		0.018196903	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1519	chr12	122490042	122490043	rs12314700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	12q24.31		rs12314700-A	0.814821	1E-10		0.0339249	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
1519	chr12	122494808	122494809	rs11835818	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs11835818-T	0.5183	2E-9		0.1413746	[0.097-0.185] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1519	chr12	122494808	122494809	rs11835818	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs11835818-T	0.5179	8E-16		0.11456798	[0.087-0.142] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1519	chr12	122494808	122494809	rs11835818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11835818-C	0.484294	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
1519	chr12	122494808	122494809	rs11835818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.31	NR	rs11835818-C	0.479101	6E-20		0.017008	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1519	chr12	122494808	122494809	rs11835818	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q24.31	BCL7A	rs11835818-T	0.512	2E-13		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1519	chr12	122497000	122497001	rs28629903	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	12q24.31	BCL7A	rs28629903-T	0.435592	1E-10		0.00909141	[0.0063-0.0119] unit increase	Affymetrix [12370749]	N
1519	chr12	122498001	122498002	rs28384349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	BCL7A	rs28384349-G	NR	5E-20		0.0331022	[0.026-0.04] unit increase	Affymetrix [319769] (imputed)	N
1519	chr12	122498001	122498002	rs28384349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	BCL7A	rs28384349-G	NR	1E-19		0.0327708	[0.026-0.04] unit increase	Affymetrix [319769] (imputed)	N
1519	chr12	122498001	122498002	rs28384349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	BCL7A	rs28384349-G	NR	1E-9		0.0222841	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1519	chr12	122498001	122498002	rs28384349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	BCL7A	rs28384349-G	NR	6E-12		0.0251277	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
1519	chr12	122498001	122498002	rs28384349	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs28384349-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122500747	122500748	rs28530689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	12q24.31		rs28530689-A	0.460614	1E-9		0.0166506	[0.011-0.022] unit decrease	Illumina [13479924] (imputed)	N
1519	chr12	122500747	122500748	rs28530689	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q24.31	LOC100506691	rs28530689-A	0.5117	1E-16		0.032213	[0.025-0.04] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1519	chr12	122503376	122503377	rs34532891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q24.31		rs34532891-T	NR	6E-25		0.0182	[0.015-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1519	chr12	122503376	122503377	rs34532891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q24.31	AC156455.1	rs34532891-T	0.4793	7E-6		0.0307	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1519	chr12	122504219	122504220	rs36079122	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	12q24.31	LOC100506691	rs36079122-T	0.525927	8E-39		0.0049792	[0.0042-0.0057] unit increase	Affymetrix [13995440] (imputed)	N
1519	chr12	122509886	122509887	rs61952920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs61952920-A	0.490586	8E-27				Affymetrix, Illumina [24246363] (imputed)	N
1519	chr12	122520111	122520112	rs75596315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	12q24.31		rs75596315-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1519	chr12	122520574	122520575	rs61952922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q24.31		rs61952922-G	NR	2E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1519	chr12	122521485	122521486	rs142827533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs142827533-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122521485	122521486	rs142827533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs142827533-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1519	chr12	122523667	122523668	rs148015593	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.31	MLXIP	rs148015593-T	0.4954	3E-21		0.0294	[0.023-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1519	chr12	122523667	122523668	rs148015593	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.31	MLXIP	rs148015593-T	0.4793	5E-6	(East Asian)	0.027	[0.015-0.039] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1519	chr12	122523667	122523668	rs148015593	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.31	NR	rs148015593-T	0.5065	3E-7	(men)	0.0258	[0.016-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1519	chr12	122523667	122523668	rs148015593	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.31	NR	rs148015593-T	0.5034	1E-13	(women)	0.0335	[0.025-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1519	chr12	122524228	122524229	rs200439131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	12q24.31		rs200439131-G	NR	4E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1519	chr12	122528262	122528263	rs36181536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	12q24.31		rs36181536-T	0.326489	4E-13		0.0311053	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1519	chr12	122528262	122528263	rs36181536	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	12q24.31		rs36181536-T	0.326492	2E-9		0.0257492	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1519	chr12	122528459	122528460	rs36126817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	12q24.31		rs36126817-G	NR	2E-34		0.0229	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1520	chr12	122583526	122583527	rs144305620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetoacetate levels	115,079 European ancestry individuals	NA	12q24.31		rs144305620-G	0.808477	2E-13		0.0382775	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
1520	chr12	122583780	122583781	rs147786161	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.31	NR	rs147786161-?	NR	3E-9		1.0524322	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1520	chr12	122588387	122588388	rs377424471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.31	MLXIP	rs377424471-G	0.480713	2E-12		0.015651526	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1520	chr12	122588387	122588388	rs377424471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31	MLXIP	rs377424471-G	0.48077	2E-14		0.0185028	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1520	chr12	122594248	122594249	rs28548845	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	12q24.31	MLXIP	rs28548845-C	0.48	3E-12		0.87	[0.84-0.91]	Affymetrix [710030]	N
1520	chr12	122599795	122599796	rs28498002	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	12q24.31	MLXIP	rs28498002-C	0.5246999999999999	1E-18		0.1566	[0.12-0.19] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1520	chr12	122602304	122602305	rs28642975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs28642975-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1520	chr12	122605948	122605949	rs4132933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs4132933-A	NR	2E-9		0.0212778	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1520	chr12	122606175	122606176	rs4132934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs4132934-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1520	chr12	122606595	122606596	rs114855183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q24.31		rs114855183-G	NR	6E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1520	chr12	122606836	122606837	rs11059094	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	12q24.31	NR	rs11059094-T	0.48	7E-11		1.08	[1.05-1.1]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1520	chr12	122607407	122607407	rs774762792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs774762792-CT	NR	3E-16		0.0231516	[0.018-0.029] unit increase	Affymetrix [321016] (imputed)	N
1520	chr12	122614059	122614060	rs7487608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs7487608-T	NR	6E-16		0.0230244	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr12	122614059	122614060	rs7487608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs7487608-T	NR	4E-15		0.0223795	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr12	122614059	122614060	rs7487608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs7487608-T	NR	2E-9		0.0176972	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1520	chr12	122615032	122615033	rs11061153	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	12q24.31		rs11061153-G	0.8056	6E-12		0.0357247	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1520	chr12	122615963	122615964	rs11061602	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q24.31	MLXIP	rs11061602-T	0.52	5E-25		10.3	z-score increase	Affymetrix [4312306] (imputed)	N
1520	chr12	122617988	122617989	rs7978353	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q24.31		rs7978353-A	0.595322	4E-11		0.0274776	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1520	chr12	122617988	122617989	rs7978353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	MLXIP	rs7978353-G	0.404837	5E-10		0.01421547	[0.0097-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1520	chr12	122618130	122618131	rs36045144	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.31	MLXIP	rs36045144-G	0.255	2E-7		1.22	[1.13-1.32]	Illumina [7206774] (imputed)	N
1520	chr12	122619485	122619486	rs11057291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs11057291-T	NR	6E-9		0.0457457	[0.03-0.061] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122619485	122619486	rs11057291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs11057291-T	NR	7E-9		0.045547	[0.03-0.061] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122619485	122619486	rs11057291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs11057291-T	NR	2E-8		0.0441234	[0.029-0.06] unit decrease	Affymetrix [321016] (imputed)	N
1520	chr12	122619485	122619486	rs11057291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	MLXIP	rs11057291-T	NR	6E-9		0.050092	[0.033-0.067] unit decrease	Affymetrix [323123] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs74580294-G	NR	7E-13		0.0458677	[0.033-0.058] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs74580294-G	NR	1E-12		0.0455227	[0.033-0.058] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs74580294-G	NR	4E-8		0.0350157	[0.022-0.048] unit decrease	Affymetrix [321016] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs74580294-G	NR	3E-9		0.0344	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q24.31	NR	rs74580294-G	NR	3E-12		0.0386	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1520	chr12	122622794	122622795	rs74580294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.31	NR	rs74580294-G	NR	4E-9		0.0326	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr12	122625991	122625992	rs7953704	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q24.31	NR	rs7953704-A	0.48	5E-23		0.0181	[0.014-0.022] unit decrease	NR [NR]	N
1520	chr12	122625991	122625992	rs7953704	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q24.31	MLXIP	rs7953704-A	0.5174	5E-6	(Japanese)	0.0181	[0.01-0.026] unit decrease	Illumina [1986983] (imputed)	N
1520	chr12	122625991	122625992	rs7953704	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	12q24.31	MLXIP	rs7953704-A	0.415	3E-7	(EA)	0.02	[0.012-0.028] unit decrease	Illumina [1986983] (imputed)	N
1520	chr12	122625991	122625992	rs7953704	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	12q24.31	B3GNT4	rs7953704-A	0.47	3E-8	(network)	0.029	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1520	chr12	122626380	122626381	rs11057509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs11057509-A	NR	4E-8		0.0202582	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1520	chr12	122630284	122630285	rs3809117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs3809117-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1520	chr12	122630908	122630909	rs1043763	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	12q24.31	MLXIP	rs1043763-T	0.574	7E-6	(Dominant model)	1.496	[1.248-1.795]	Illumina [733202]	N
1520	chr12	122630914	122630915	rs1043764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs1043764-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1520	chr12	122631963	122631964	rs56263064	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	MLXIP	rs56263064-C	0.714106	6E-10		0.013661	[0.0093-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1520	chr12	122632378	122632379	rs7969643	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	MLXIP	rs7969643-T	0.2524	9E-11		0.0141	[0.0098-0.0184] unit decrease	Affymetrix [18391927] (imputed)	N
1520	chr12	122632509	122632510	rs141558946	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12q24.31	NR	rs141558946-?		3E-6		0.05	[0.029-0.071] unit decrease	Illumina [7533529] (imputed)	N
1520	chr12	122632935	122632936	rs11057867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q24.31	NR	rs11057867-A	NR	3E-13		0.0175	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr12	122632935	122632936	rs11057867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.31	NR	rs11057867-A	NR	7E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1520	chr12	122633455	122633456	rs2048498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MLXIP	rs2048498-C	NR	5E-14		0.0277174	[0.021-0.035] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122634002	122634003	rs925460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs925460-T	NR	1E-13		0.0276393	[0.02-0.035] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122635823	122635824	rs7132874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	MLXIP	rs7132874-G	NR	1E-8		0.0215626	[0.014-0.029] unit increase	Affymetrix [321169] (imputed)	N
1520	chr12	122642026	122642027	rs11058322	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs11058322-T	0.1365	1E-8	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1520	chr12	122645047	122645048	rs4319543	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	12q24.31	LRRC43	rs4319543-?	NR	1E-7	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1520	chr12	122645458	122645458	rs35198667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	LRRC43	rs35198667-AG	NR	3E-8		0.0162445	[0.01-0.022] unit increase	Affymetrix [321788] (imputed)	N
1520	chr12	122645458	122645458	rs35198667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43	rs35198667-AG	NR	1E-15		0.0226016	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
1520	chr12	122645785	122645786	rs372513026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	LRRC43	rs372513026-T	NR	2E-8		0.0404477	[0.026-0.055] unit decrease	Affymetrix [323123] (imputed)	N
1520	chr12	122646221	122646221	rs757171557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43	rs757171557-C	NR	1E-10		0.0181991	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr12	122646221	122646221	rs757171557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	LRRC43	rs757171557-C	NR	7E-10		0.0174926	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1520	chr12	122654381	122654382	rs7955910	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12q24.31	LRRC43	rs7955910-T	0.4825	1E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1520	chr12	122657382	122657383	rs7977932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43, IL31	rs7977932-G	NR	1E-8		0.021859	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122657382	122657383	rs7977932	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	LRRC43, IL31	rs7977932-G	NR	3E-8		0.021373	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122659905	122659906	rs142318298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43	rs142318298-A	NR	6E-9		0.0378932	[0.025-0.051] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122659905	122659906	rs142318298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	LRRC43	rs142318298-A	NR	1E-8		0.0371283	[0.024-0.05] unit increase	Affymetrix [319769] (imputed)	N
1520	chr12	122659905	122659906	rs142318298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43	rs142318298-A	NR	2E-12		0.0460227	[0.033-0.059] unit decrease	Affymetrix [321016] (imputed)	N
1520	chr12	122661790	122661791	rs7968808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q24.31		rs7968808-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1520	chr12	122662540	122662541	rs7953139	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q24.31	NR	rs7953139-C	0.4797	1E-11		1.041	[1.03-1.053]	Affymetrix [15688218] (imputed)	N
1520	chr12	122662540	122662541	rs7953139	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	12q24.31	NR	rs7953139-C	0.4797	8E-11		1.036	[1.025-1.046]	Affymetrix [15688218] (imputed)	N
1520	chr12	122667630	122667631	rs77165791	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	LRRC43	rs77165791-G	NR	3E-8		0.0217304	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1520	chr12	122668325	122668326	rs11059675	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	12q24.31	IL31	rs11059675-A	0.46	2E-8		1.1		Illumina, Perlegen [9113515] (imputed)	N
1520	chr12	122668964	122668965	rs10847623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	LRRC43	rs10847623-T	NR	3E-8		0.0166808	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1520	chr12	122675575	122675576	rs12810587	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs12810587-T	0.3256	4E-10		0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1520	chr12	122675575	122675576	rs12810587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.31	LRRC43	rs12810587-T	0.3241	7E-6		0.0308	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1521	chr12	122686436	122686437	rs10848035	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs10848035-T	0.728541	4E-10		0.0146307	[0.01-0.019] unit decrease	NR [NR]	N
1521	chr12	122688255	122688256	rs61955587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	B3GNT4	rs61955587-G	NR	1E-8		0.0347535	[0.023-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1521	chr12	122688255	122688256	rs61955587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	B3GNT4	rs61955587-G	NR	3E-8		0.0336405	[0.022-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1521	chr12	122691737	122691738	rs4758675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (2df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 47,916 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	12q24.31		rs4758675-C	0.02	6E-7	(African)			Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1521	chr12	122691737	122691738	rs4758675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	12q24.31		rs4758675-C	0.02	1E-8	(African)	0.029	[-0.08272-0.14072] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1521	chr12	122691737	122691738	rs4758675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	12q24.31		rs4758675-?	NR	2E-7	(African)	0.02844	[-0.09102-0.1479] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1521	chr12	122691737	122691738	rs4758675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels in non smokers	18,489 African ancestry individuals, 3,841 Asian ancestry individuals, 63,740 European ancestry individuals, 5,941 Hispanic individuals	NA	12q24.31		rs4758675-?	NR	2E-6	(African)	0.1246	[0.073-0.176] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1521	chr12	122691737	122691738	rs4758675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	12q24.31		rs4758675-?	NR	8E-8	(African)	0.1288	[0.082-0.176] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1521	chr12	122693601	122693602	rs7957117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DIABLO, RP11-512M8.5	rs7957117-G	NR	3E-13		0.0513002	[0.038-0.065] unit increase	Affymetrix [319769] (imputed)	N
1521	chr12	122693601	122693602	rs7957117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DIABLO, RP11-512M8.5	rs7957117-G	NR	6E-13		0.0506167	[0.037-0.064] unit increase	Affymetrix [319769] (imputed)	N
1521	chr12	122693601	122693602	rs7957117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DIABLO, RP11-512M8.5	rs7957117-G	NR	7E-9		0.0410121	[0.027-0.055] unit increase	Affymetrix [321169] (imputed)	N
1521	chr12	122724003	122724004	rs117293213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RP11-512M8.5, VPS33A	rs117293213-T	NR	5E-9		0.03752	[0.025-0.05] unit increase	Affymetrix [321016] (imputed)	N
1521	chr12	122749233	122749234	rs4758649	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q24.31	NR	rs4758649-G	0.233598	1E-9		0.050662737	[0.034-0.067] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1521	chr12	122760190	122760191	rs7968420	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	12q24.31	CLIP1	rs7968420-G	NR	4E-8		0.00760467	[0.0048-0.0104] unit increase	Affymetrix [10061374] (imputed)	N
1521	chr12	122761819	122761820	rs79529347	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CLIP1	rs79529347-?	NR	8E-11	(male)	2.07712	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	CLIP1	rs11057405-A	NR	7E-11		0.0325063	[0.023-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	CLIP1	rs11057405-G	0.9105	1E-18				Affymetrix, Illumina [2331072] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	12q24.31	CLIP1	rs11057405-G	0.9105	4E-13				Affymetrix, Illumina [2331072] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs11057405-A	NR	1E-16		0.034	[0.026-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	12q24.31	CLIP1	rs11057405-A	0.0861665724628353	3E-14		0.07562779	unit decrease	Illumina [265780]	N
1521	chr12	122781896	122781897	rs11057405	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.31	NR	rs11057405-G	NR	3E-10		0.029	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	12q24.31	CLIP1	rs11057405-G	NR	4E-6	(additive model)	0.03	[0.016-0.044] unit increase	NR [9288881] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.31	CLIP1	rs11057405-G	0.902	2E-6	(EA, women)	0.033	[0.02-0.047] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1521	chr12	122781896	122781897	rs11057405	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.31	CLIP1	rs11057405-G	0.902	1E-8		0.03	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1521	chr12	122781896	122781897	rs11057405	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.31	CLIP1	rs11057405-G	0.901	2E-8	(EA)	0.031	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1521	chr12	122781896	122781897	rs11057405	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CLIP1	rs11057405-A	0.098	3E-9	(EA,women)	0.0489	[0.033-0.065] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1521	chr12	122781896	122781897	rs11057405	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CLIP1	rs11057405-A	0.098	2E-10	(EA)	0.04	[0.028-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1521	chr12	122787303	122787304	rs12578953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs12578953-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1521	chr12	122803642	122803643	rs75810210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs75810210-T	NR	7E-10		0.0314246	[0.021-0.041] unit decrease	Affymetrix [321788] (imputed)	N
1521	chr12	122803642	122803643	rs75810210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs75810210-T	NR	2E-19		0.0444062	[0.035-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr12	122817579	122817580	rs17883517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs17883517-G	NR	6E-10		0.0263	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1522	chr12	122823776	122823777	rs10846664	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q24.31	NR	rs10846664-A	0.246612754192508	3E-8		0.017600372	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1522	chr12	122829870	122829870	rs5801470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs5801470-A	NR	4E-9		0.0172485	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1522	chr12	122829870	122829870	rs5801470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs5801470-A	NR	1E-8		0.0168425	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1522	chr12	122846948	122846949	rs7952868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs7952868-A	NR	8E-11		0.0212045	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr12	122854615	122854616	rs12366339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs12366339-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1522	chr12	122854615	122854616	rs12366339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs12366339-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1522	chr12	122854708	122854708	rs796804864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs796804864-C	NR	1E-12		0.0234916	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1522	chr12	122863658	122863659	rs61021925	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.31	NR	rs61021925-T	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	2E-20		0.0736907	[0.058-0.089] unit increase	Affymetrix [319769] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	6E-20		0.0727498	[0.057-0.088] unit increase	Affymetrix [319769] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	2E-9		0.0483581	[0.033-0.064] unit increase	Affymetrix [321114] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	3E-8		0.045824	[0.03-0.062] unit decrease	Affymetrix [321788] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	2E-9		0.0476458	[0.032-0.063] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr12	122887312	122887313	rs77251835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CLIP1	rs77251835-G	NR	1E-11		0.0547118	[0.039-0.07] unit increase	Affymetrix [321169] (imputed)	N
1522	chr12	122889814	122889815	rs11058014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CLIP1	rs11058014-T	NR	5E-11		0.0479225	[0.034-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1522	chr12	122900459	122900460	rs4758648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	12q24.31	CLIP1	rs4758648-A	0.2523	2E-6		0.0368	[0.022-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1522	chr12	122902221	122902222	rs34220678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs34220678-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1522	chr12	122902221	122902222	rs34220678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs34220678-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1522	chr12	122908475	122908476	rs7972135	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	12q24.31	NR	rs7972135-?		3E-6		0.021	[0.012-0.03] unit decrease	Illumina [7533529] (imputed)	N
1522	chr12	122931558	122931559	rs10744208	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12q24.31	NA	rs10744208-C		7E-14		0.0158749	[0.012-0.02] unit increase	Illumina [13288253] (imputed)	N
1522	chr12	122944751	122944752	rs10773178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs10773178-C	0.760261	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
1523	chr12	122947264	122947265	rs7316114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs7316114-A	NR	7E-12		0.0220593	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1523	chr12	122948906	122948907	rs116896792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	NR	rs116896792-C	0.091679	1E-11		0.026948873	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr12	122948906	122948907	rs116896792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	NR	rs116896792-C	0.091684	1E-11		0.026890106	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr12	122948906	122948907	rs116896792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31		rs116896792-C	0.091726	6E-14		0.029479306	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr12	122948906	122948907	rs116896792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31		rs116896792-C	0.091731	9E-14		0.02924556	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr12	122948906	122948907	rs116896792	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	12q24.31	intergenic	rs116896792-C	0.0919	8E-9		0.03579389	[0.024-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1523	chr12	122950374	122950375	rs7964138	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	12q24.31	CLIP1, ZCCHC8	rs7964138-A	0.2576	7E-8		0.0104521	[0.0067-0.0142] unit increase	Affymetrix [11880941] (imputed)	N
1523	chr12	122951118	122951119	rs12425970	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q24.31	NR	rs12425970-G	0.253479	4E-8		0.044460867	[0.029-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1523	chr12	122952922	122952923	rs11609474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs11609474-T	NR	1E-9		0.0257835	[0.017-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs12369179-T	NR	7E-30		0.0553463	[0.046-0.065] unit increase	Affymetrix [319769] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs12369179-T	NR	3E-29		0.054752	[0.045-0.064] unit increase	Affymetrix [319769] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs12369179-T	NR	6E-11		0.0321986	[0.023-0.042] unit increase	Affymetrix [321114] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs12369179-T	NR	5E-19		0.0439689	[0.034-0.054] unit increase	Affymetrix [321169] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	12q24.31		rs12369179-C	0.91	1E-8		0.02	mmol/L decrease	NR [NR] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q24.31		rs12369179-C	0.91	1E-18				NR [NR] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	12q24.31		rs12369179-C	0.91	3E-34		0.038	mmol/L increase	NR [NR] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q24.31		rs12369179-C	0.91	2E-29		0.029	% increase	NR [NR] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	12q24.31		rs12369179-C	0.91	4E-7		0.018	U/L decrease	NR [NR] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs12369179-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.31	NA	rs12369179-T	0.085	2E-28		0.034	[0.028-0.04] unit decrease	NR [~ 27400000] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q24.31	NA	rs12369179-T	0.085	2E-28		0.034	[0.028-0.04] unit decrease	NR [~ 27400000] (imputed)	N
1523	chr12	122963549	122963550	rs12369179	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	12q24.31	NR	rs12369179-?	NR	8E-7				Affymetrix [NR]	N
1523	chr12	122963549	122963550	rs12369179	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	12q24.31	NR	rs12369179-?	NR	4E-6				Affymetrix [NR]	N
1523	chr12	122964707	122964708	rs10846978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZCCHC8	rs10846978-T	NR	3E-10		0.0205899	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
1523	chr12	122970155	122970156	rs10773208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs10773208-T	0.2526	8E-12		0.011	[0.0079-0.0141] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1523	chr12	122971141	122971142	rs11058375	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	ZCCHC8	rs11058375-T	NR	3E-9		0.0485606	[0.032-0.065] unit decrease	Affymetrix [323123] (imputed)	N
1523	chr12	122981058	122981059	rs77786029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs77786029-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1523	chr12	122988842	122988843	rs12818552	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	12q24.31	NR	rs12818552-A	0.451	6E-6		0.015980817	[0.0091-0.0229] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1523	chr12	123009497	123009498	rs12816396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RSRC2	rs12816396-T	NR	4E-8		0.0209351	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1523	chr12	123009497	123009498	rs12816396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RSRC2	rs12816396-T	NR	5E-10		0.0236476	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1523	chr12	123018474	123018475	rs11615433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	KNTC1	rs11615433-C	NR	1E-13		0.0309893	[0.023-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1523	chr12	123018474	123018475	rs11615433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs11615433-C	NR	5E-14		0.0314437	[0.023-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1523	chr12	123018474	123018475	rs11615433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs11615433-C	NR	5E-10		0.026216	[0.018-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1523	chr12	123018893	123018894	rs10734924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs10734924-T	0.2623	7E-10	(MTAG)	0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1523	chr12	123018893	123018894	rs10734924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs10734924-T	0.2603	1E-11	(MTAG)	0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	12q24.31		rs147730268-T	NR	1E-8		0.0243	[0.016-0.033] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.31		rs147730268-T	NR	2E-17		0.0357	[0.027-0.044] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q24.31	KNTC1	rs147730268-T	0.087537	1E-9		0.0279617	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.31	KNTC1	rs147730268-G	0.912739	4E-20		0.0228315	[0.018-0.028] unit increase	Affymetrix [12370749]	N
1523	chr12	123024475	123024476	rs147730268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs147730268-?	NR	1E-25				Affymetrix [~ 8270000] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs147730268-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1523	chr12	123024475	123024476	rs147730268	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12q24.31	KNTC1	rs147730268-T	0.0883	2E-11		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
1523	chr12	123034717	123034717	rs72417075	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.31	KNTC1	rs72417075-A	0.6805	9E-6		0.0335	[0.019-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1523	chr12	123043144	123043145	rs10773302	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q24.31	NR	rs10773302-G	0.2683	8E-10		0.017215151	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1523	chr12	123051017	123051018	rs6489111	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	KNTC1	rs6489111-G	0.362355	6E-9	(females)	0.01512	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1523	chr12	123051017	123051018	rs6489111	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	KNTC1	rs6489111-G	0.362355	2E-12	(females)	0.01874	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1523	chr12	123051017	123051018	rs6489111	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	KNTC1	rs6489111-G	0.362355	1E-8		0.01068	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1523	chr12	123070217	123070218	rs36117464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.31	Intergenic	rs36117464-A	0.0426	3E-8	(MTAG)	0.0314	[0.02-0.043] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1523	chr12	123074168	123074169	rs61954974	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	12q24.31	KNTC1	rs61954974-T	NR	2E-9		0.00865584	[0.0058-0.0115] unit increase	Affymetrix [10061374] (imputed)	N
1523	chr12	123074486	123074487	rs146677327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	KNTC1	rs146677327-T	NR	2E-10		0.0892394	[0.062-0.117] unit increase	Affymetrix [319769] (imputed)	N
1523	chr12	123074486	123074487	rs146677327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs146677327-T	NR	8E-11		0.0911902	[0.064-0.119] unit increase	Affymetrix [319769] (imputed)	N
1523	chr12	123074486	123074487	rs146677327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs146677327-T	NR	3E-8		0.0784738	[0.051-0.106] unit increase	Affymetrix [321114] (imputed)	N
1523	chr12	123074486	123074487	rs146677327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs146677327-T	NR	4E-8		0.0778195	[0.05-0.106] unit increase	Affymetrix [321169] (imputed)	N
1524	chr12	123079034	123079035	rs4319547	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.31	NR	rs4319547-A	NR	1E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1524	chr12	123079034	123079035	rs4319547	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	12q24.31	KNTC1	rs4319547-G	0.75	3E-8		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1524	chr12	123091755	123091756	rs137935047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	KNTC1	rs137935047-A	NR	1E-8		0.0470142	[0.031-0.063] unit increase	Affymetrix [321016] (imputed)	N
1524	chr12	123094719	123094720	rs2277346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	KNTC1	rs2277346-C	NR	2E-9		0.0177863	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123094719	123094720	rs2277346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	KNTC1	rs2277346-C	NR	8E-9		0.0170291	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123094719	123094720	rs2277346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	KNTC1	rs2277346-C	NR	2E-10		0.0187883	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1524	chr12	123100396	123100397	rs6489156	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q24.31	NA	rs6489156-T	0.7338	2E-24		0.0196	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1524	chr12	123112805	123112806	rs6489159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.31		rs6489159-A	NR	2E-32		0.0252	[0.021-0.029] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1524	chr12	123118475	123118476	rs117269855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs117269855-T	NR	7E-13		0.0537763	[0.039-0.068] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123118475	123118476	rs117269855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs117269855-T	NR	1E-12		0.0533017	[0.039-0.068] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123118475	123118476	rs117269855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs117269855-T	NR	4E-9		0.0447849	[0.03-0.06] unit increase	Affymetrix [321169] (imputed)	N
1524	chr12	123120752	123120753	rs113423479	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs113423479-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123124777	123124778	rs10773394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs10773394-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123125850	123125851	rs544440191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs544440191-A	NR	3E-9		0.0513587	[0.034-0.068] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123125850	123125851	rs544440191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs544440191-A	NR	5E-9		0.0504955	[0.034-0.067] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123127275	123127276	rs61955003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs61955003-G	NR	4E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1524	chr12	123139393	123139394	rs80265946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs80265946-A	NR	1E-14		0.0462	[0.034-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1524	chr12	123142616	123142617	rs140998934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs140998934-A	NR	2E-8		0.0371144	[0.024-0.05] unit increase	Affymetrix [321016] (imputed)	N
1524	chr12	123144188	123144189	rs78440611	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs78440611-A	0.9039	5E-9	(MTAG)	0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1524	chr12	123144188	123144189	rs78440611	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs78440611-A	0.9026	6E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1524	chr12	123144188	123144189	rs78440611	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs78440611-A	0.9026	6E-11	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1524	chr12	123144292	123144293	rs10847415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs10847415-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1524	chr12	123151952	123151953	rs7307887	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs7307887-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123155682	123155683	rs34371863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs34371863-T	NR	8E-12		0.0369306	[0.026-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123155682	123155683	rs34371863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs34371863-T	NR	2E-11		0.0362598	[0.026-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123156675	123156676	rs7350636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs7350636-C	NR	1E-9		0.0175954	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123156675	123156676	rs7350636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs7350636-C	NR	3E-9		0.0171303	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123159261	123159262	rs838777	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	HCAR1	rs838777-C	0.861738	4E-11		0.0183011	[0.013-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1524	chr12	123159399	123159400	rs2133633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs2133633-G	NR	5E-14		0.0319324	[0.024-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123160729	123160730	rs486036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs486036-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123160885	123160886	rs645987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs645987-G	NR	2E-13		0.0311021	[0.023-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123160885	123160886	rs645987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs645987-G	NR	1E-8		0.0250665	[0.016-0.034] unit increase	Affymetrix [321788] (imputed)	N
1524	chr12	123160885	123160886	rs645987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs645987-G	NR	2E-14		0.0325615	[0.024-0.041] unit increase	Affymetrix [321016] (imputed)	N
1524	chr12	123162785	123162786	rs4759364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	HCAR1	rs4759364-T	0.179818	2E-12		0.020586958	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1524	chr12	123162785	123162786	rs4759364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs4759364-?	NR	8E-25				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123162785	123162786	rs4759364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs4759364-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123174023	123174023	rs529994558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	12q24.31	HCAR1, RP11-324E6.6	rs529994558-AT	0.17513	2E-10		0.0208701	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr12	123174023	123174023	rs529994558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q24.31	NR	rs529994558-I	0.175112	2E-12		0.020062	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1524	chr12	123174742	123174743	rs601339	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q24.31	NR	rs601339-A	0.83	1E-25		0.025	[0.02-0.03] unit increase	Affymetrix [2446094] (imputed)	N
1524	chr12	123174742	123174743	rs601339	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q24.31	NR	rs601339-A	0.83	5E-8				Affymetrix [2446094] (imputed)	N
1524	chr12	123174742	123174743	rs601339	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	12q24.31	GPR109A	rs601339-G	0.19	4E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1524	chr12	123178478	123178478	rs139129572	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	12q24.31	HCAR2	rs139129572-GA	0.449	6E-9				Illumina [7300000] (imputed)	N
1524	chr12	123181552	123181553	rs506812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	12q24.31		rs506812-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1524	chr12	123186380	123186381	rs492699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	HCAR2	rs492699-C	0.225079	2E-9		0.016880188	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	1E-10		0.0310679	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-10		0.0310197	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	1E-11		0.0323785	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-11		0.0307604	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	3E-10		0.0286048	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789525	4E-10		0.0294237	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	9E-11		0.0295585	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	5E-12		0.0307908	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-13		0.0332722	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789538	5E-11		0.0294825	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	5E-12		0.0310773	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-9		0.0290319	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	3E-8		0.0261967	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	3E-9		0.0280725	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	6E-9		0.0267728	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	9E-14		0.03315	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	1E-11		0.0305757	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	3E-11		0.0304005	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-8		0.0268552	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	3E-12		0.0335864	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-13		0.0335906	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-11		0.0324976	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-13		0.0349443	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	8E-13		0.0327629	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs56959712-G	0.789529	2E-9		0.0281773	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs56959712-T	0.212349	1E-19				Affymetrix, Illumina [22063850] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	12q24.31	HCAR2	rs56959712-T	0.210819	6E-9		0.0470487	[0.031-0.063] unit decrease	Affymetrix [9463307] (imputed)	N
1524	chr12	123188474	123188475	rs56959712	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	12q24.31	NR	rs56959712-T	0.2159	7E-13	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1524	chr12	123189284	123189285	rs112378089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs112378089-G	NR	2E-10		0.0416281	[0.029-0.054] unit decrease	Affymetrix [321114] (imputed)	N
1524	chr12	123189284	123189285	rs112378089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs112378089-G	NR	2E-11		0.0438508	[0.031-0.057] unit decrease	Affymetrix [321169] (imputed)	N
1524	chr12	123189793	123189794	rs7133768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs7133768-C	NR	3E-21		0.0291266	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123189793	123189794	rs7133768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs7133768-C	NR	6E-21		0.028916	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123189793	123189794	rs7133768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs7133768-C	NR	1E-11		0.0210773	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1524	chr12	123189793	123189794	rs7133768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs7133768-C	NR	5E-17		0.0260858	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	5E-29		0.067906	[0.056-0.08] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	1E-28		0.0674977	[0.056-0.079] unit increase	Affymetrix [319769] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	2E-12		0.0430197	[0.031-0.055] unit increase	Affymetrix [321114] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	5E-14		0.045637	[0.034-0.058] unit decrease	Affymetrix [321016] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	3E-8		0.0366595	[0.024-0.05] unit decrease	Affymetrix [323123] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs11059476-T	NR	3E-20		0.0565643	[0.045-0.069] unit increase	Affymetrix [321169] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11059476-T	0.0568814	4E-10				Affymetrix, Illumina [21126107] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11059476-?	NR	2E-24				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs11059476-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123192598	123192599	rs11059476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs11059476-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1524	chr12	123195799	123195800	rs61955029	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	12q24.31		rs61955029-G	0.378406	3E-18		1.0385792	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs73226103-G	NR	2E-18		0.0490102	[0.038-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs73226103-G	NR	8E-19		0.0494543	[0.039-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs73226103-G	NR	4E-11		0.037248	[0.026-0.048] unit decrease	Affymetrix [321114] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs73226103-G	NR	1E-8		0.0332492	[0.022-0.045] unit increase	Affymetrix [321788] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6	rs73226103-G	NR	5E-11		0.0370243	[0.026-0.048] unit decrease	Affymetrix [321169] (imputed)	N
1524	chr12	123196077	123196078	rs73226103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs73226103-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123198920	123198921	rs2262194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2262194-T	0.78992	3E-8		0.0267261	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1524	chr12	123199393	123199394	rs2936772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6, HCAR3	rs2936772-T	NR	7E-21		0.0330144	[0.026-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1524	chr12	123199409	123199410	rs113740515	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	HCAR1	rs113740515-G	0.79055	1E-58		0.0377999	[0.033-0.042] unit decrease	Affymetrix [NR] (imputed)	N
1524	chr12	123200015	123200016	rs139948644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6, HCAR3	rs139948644-T	NR	3E-17		0.0762633	[0.059-0.094] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123200015	123200016	rs139948644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6, HCAR3	rs139948644-T	NR	8E-18		0.0777577	[0.06-0.095] unit decrease	Affymetrix [319769] (imputed)	N
1524	chr12	123200015	123200016	rs139948644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6, HCAR3	rs139948644-T	NR	1E-14		0.0704262	[0.053-0.088] unit decrease	Affymetrix [321114] (imputed)	N
1524	chr12	123200015	123200016	rs139948644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1, RP11-324E6.6, HCAR3	rs139948644-T	NR	5E-14		0.068878	[0.051-0.087] unit decrease	Affymetrix [321169] (imputed)	N
1524	chr12	123200015	123200016	rs139948644	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs139948644-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1524	chr12	123200767	123200768	rs1798192	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q24.31	HCAR3	rs1798192-T	0.4354	9E-7		0.0216	[0.013-0.03] unit increase	Affymetrix, Illumina [~ 228985]	N
1524	chr12	123200767	123200768	rs1798192	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q24.31	HCAR3	rs1798192-T	0.4298	6E-8		0.0245	[0.016-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1524	chr12	123200767	123200768	rs1798192	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q24.31	HCAR3	rs1798192-T	0.4321	8E-7		0.0164	[0.0099-0.0229] unit increase	Affymetrix, Illumina [at least 228985]	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	2E-8		0.0270225	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	2E-8		0.0270988	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	1E-8		0.0274084	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	2E-9		0.0285491	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	3E-9		0.029067	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	1E-9		0.0284001	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	4E-8		0.0262384	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs28639492-T	0.789708	4E-9		0.0279871	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1524	chr12	123201725	123201726	rs28639492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.31	NR	rs28639492-C	0.210747	3E-22		0.023605	[0.019-0.028] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1524	chr12	123203088	123203088	rs10672427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	HCAR1	rs10672427-CTT	0.204032	1E-10		0.018303093	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr12	123203257	123203258	rs488635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs488635-G	NR	2E-11		0.0240896	[0.017-0.031] unit increase	Affymetrix [321788] (imputed)	N
1524	chr12	123203257	123203258	rs488635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs488635-G	NR	1E-11		0.0234756	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
1524	chr12	123203730	123203731	rs2454703	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs2454703-?	NR	4E-13		0.005388	[0.0035-0.0073] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1524	chr12	123206339	123206340	rs580063	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q24.31	HCAR1	rs580063-T	0.790194	3E-19		0.0219621	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
1524	chr12	123206339	123206340	rs580063	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12q24.31	HCAR1	rs580063-?	NR	4E-13		0.0233	[0.018-0.029] unit decrease	Affymetrix [5701386] (imputed)	N
1524	chr12	123206932	123206933	rs11059583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11059583-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	4E-13		0.0323852	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	9E-11		0.0312746	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	4E-9		0.0290061	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	1E-8		0.0263255	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	7E-14		0.0333262	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	6E-15		0.0351033	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	1E-13		0.0338893	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	8E-15		0.0347983	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs3922628-T	0.789504	5E-11		0.029642	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs3922628-A	NR	6E-38		0.0445959	[0.038-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs3922628-A	NR	5E-38		0.0446889	[0.038-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs3922628-A	NR	4E-25		0.0363211	[0.029-0.043] unit decrease	Affymetrix [321169] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.31	HCAR1	rs3922628-A	0.210633	1E-16		0.022537433	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1525	chr12	123209294	123209295	rs3922628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs3922628-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1525	chr12	123215733	123215734	rs525017	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q24.31	NR	rs525017-C	0.942827	4E-10		0.0904914	[0.061-0.12] unit decrease	Affymetrix [17914406] (imputed)	N
1525	chr12	123216752	123216752	rs34511689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HCAR1	rs34511689-CAA	NR	4E-20		0.0452384	[0.036-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123216752	123216752	rs34511689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs34511689-CAA	NR	1E-19		0.0447667	[0.035-0.054] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123216752	123216752	rs34511689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HCAR1	rs34511689-CAA	NR	9E-11		0.0322803	[0.023-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1525	chr12	123220378	123220379	rs137929115	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs137929115-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123220415	123220416	rs34623699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs34623699-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123223329	123223330	rs2245611	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs2245611-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123235091	123235092	rs12810864	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	DENR	rs12810864-G	0.915891	1E-10		0.0231884	[0.016-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1525	chr12	123235239	123235240	rs116862333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	RP11-324E6.4	rs116862333-C	NR	8E-9		0.0593674	[0.039-0.08] unit decrease	Affymetrix [323123] (imputed)	N
1525	chr12	123239058	123239059	rs117742602	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	12q24.31	DENR, HCAR1, HCAR3	rs117742602-G	0.011	7E-7		0.19	[0.12-0.26] unit decrease	Illumina [10000000] (imputed)	N
1525	chr12	123248254	123248255	rs111933537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DENR	rs111933537-C	NR	1E-9		0.0327297	[0.022-0.043] unit increase	Affymetrix [321788] (imputed)	N
1525	chr12	123248254	123248255	rs111933537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DENR	rs111933537-C	NR	4E-14		0.0390202	[0.029-0.049] unit increase	Affymetrix [321016] (imputed)	N
1525	chr12	123269422	123269423	rs192413221	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	CCDC62	rs192413221-T	0.0146	5E-14		0.0613	[0.045-0.077] unit increase	Affymetrix [18391927] (imputed)	N
1525	chr12	123270852	123270853	rs1696319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs1696319-C	NR	3E-8		0.0248355	[0.016-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123270852	123270853	rs1696319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs1696319-C	NR	2E-8		0.0251723	[0.016-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123275772	123275773	rs12319160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs12319160-T	NR	2E-12		0.0463058	[0.033-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123275772	123275773	rs12319160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs12319160-T	NR	2E-12		0.0465426	[0.034-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138436155-C	NR	1E-13		0.0531832	[0.039-0.067] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138436155-C	NR	2E-13		0.0528503	[0.039-0.067] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138436155-C	NR	2E-8		0.0410091	[0.027-0.055] unit increase	Affymetrix [321114] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138436155-C	NR	4E-9		0.0428092	[0.029-0.057] unit increase	Affymetrix [321169] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs138436155-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123285109	123285110	rs138436155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs138436155-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123288312	123288313	rs77422670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs77422670-C	NR	2E-11		0.0465	[0.033-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1525	chr12	123288312	123288313	rs77422670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	12q24.31	NR	rs77422670-C	NR	1E-9		0.0416	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1525	chr12	123292502	123292503	rs11060112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060112-C	NR	4E-19		0.0285345	[0.022-0.035] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123292502	123292503	rs11060112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060112-C	NR	2E-18		0.02798	[0.022-0.034] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123292502	123292503	rs11060112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060112-C	NR	3E-10		0.020314	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1525	chr12	123292502	123292503	rs11060112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060112-C	NR	7E-14		0.0241754	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
1525	chr12	123292502	123292503	rs11060112	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	12q24.31	CCDC62	rs11060112-A		2E-10		0.1102	[0.076-0.144] unit increase	Illumina [NR]	N
1525	chr12	123296203	123296204	rs138062324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138062324-A	NR	6E-13		0.0290005	[0.021-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123296203	123296204	rs138062324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138062324-A	NR	7E-12		0.0276484	[0.02-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123296203	123296204	rs138062324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs138062324-A	NR	2E-14		0.0309183	[0.023-0.039] unit increase	Affymetrix [321016] (imputed)	N
1525	chr12	123296293	123296294	rs12817488	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	12q24.31	CCDC62, HIP1R	rs12817488-T	0.41	3E-13		1.14	[1.10-1.18]	Illumina [7689524] (imputed)	N
1525	chr12	123303585	123303586	rs11060180	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	12q24.31	OGFOD2	rs11060180-A	0.551	2E-20		1.1111112	[1.09-1.14]	Illumina [11933700] (imputed)	N
1525	chr12	123303585	123303586	rs11060180	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	12q24.31	CCDC62	rs11060180-?	NR	3E-10		1.1074197	[1.07-1.14]	Illumina [12438219] (imputed)	N
1525	chr12	123303585	123303586	rs11060180	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	12q24.31	CCDC62	rs11060180-A	0.558	6E-12		1.105	[1.08-1.13]	Illumina [7893274] (imputed)	N
1525	chr12	123310520	123310521	rs11060212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060212-G	NR	8E-19		0.0259329	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123310520	123310521	rs11060212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060212-G	NR	3E-9		0.0174638	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1525	chr12	123310520	123310521	rs11060212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs11060212-G	NR	7E-14		0.0221695	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
1525	chr12	123311242	123311243	rs77166802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC62	rs77166802-A	NR	4E-8		0.0332709	[0.021-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123311242	123311243	rs77166802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs77166802-A	NR	2E-8		0.0339991	[0.022-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123311242	123311243	rs77166802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC62	rs77166802-A	NR	4E-8		0.0336565	[0.022-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1525	chr12	123311242	123311243	rs77166802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs77166802-A	NR	6E-12		0.0375	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1525	chr12	123314914	123314915	rs146764950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.31	HIP1R	rs146764950-T	0.034279	3E-10		0.0387194	[0.027-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1525	chr12	123314951	123314952	rs111589530	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.31	NR	rs111589530-?	NR	3E-9		1.08199	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1525	chr12	123318454	123318455	rs146459385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs146459385-A	NR	9E-25		0.065051	[0.053-0.077] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123318454	123318455	rs146459385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs146459385-A	NR	2E-24		0.0646414	[0.052-0.077] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123318454	123318455	rs146459385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs146459385-A	NR	1E-12		0.0453308	[0.033-0.058] unit increase	Affymetrix [321114] (imputed)	N
1525	chr12	123318454	123318455	rs146459385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs146459385-A	NR	4E-9		0.0386618	[0.026-0.052] unit decrease	Affymetrix [321788] (imputed)	N
1525	chr12	123318454	123318455	rs146459385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs146459385-A	NR	3E-15		0.0504171	[0.038-0.063] unit increase	Affymetrix [321169] (imputed)	N
1525	chr12	123323337	123323338	rs78560615	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.31	NR	rs78560615-A	0.0122	2E-10	(PRTN3)	0.08495	NR unit increase	Illumina [1671387] (imputed)	N
1525	chr12	123326325	123326326	rs897392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs897392-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1525	chr12	123326597	123326598	rs10847864	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q24.31	HIP1R	rs10847864-T	0.364	1E-37		0.1478	[0.13-0.17] unit increase	NR [7784415] (imputed)	N
1525	chr12	123327899	123327900	rs10773657	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q24.31	HIP1R	rs10773657-C	0.138	3E-8		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
1525	chr12	123327899	123327900	rs10773657	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.31	HIP1R	rs10773657-C	0.14	4E-7		1.06	[1.03-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	1E-43		0.0554808	[0.048-0.063] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	9E-43		0.0549891	[0.047-0.063] unit increase	Affymetrix [319769] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	2E-22		0.0394321	[0.031-0.047] unit increase	Affymetrix [321114] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	2E-10		0.0266033	[0.018-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	2E-15		0.0318697	[0.024-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060344-G	NR	3E-30		0.0463882	[0.038-0.054] unit increase	Affymetrix [321169] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11060344-?	NR	4E-37				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11060344-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123329100	123329101	rs11060344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs11060344-?	NR	3E-36				NR [~ 8900000] (imputed)	N
1525	chr12	123335487	123335488	rs2271049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2271049-G	NR	2E-16		0.0334264	[0.025-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123335487	123335488	rs2271049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2271049-G	NR	7E-17		0.0339006	[0.026-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1525	chr12	123335487	123335488	rs2271049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2271049-G	NR	2E-9		0.0245261	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1525	chr12	123335487	123335488	rs2271049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2271049-G	NR	4E-10		0.0257269	[0.018-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1525	chr12	123335487	123335488	rs2271049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs2271049-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1525	chr12	123336788	123336789	rs10744422	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.31	HIP1R	rs10744422-T	NR	6E-7	(East Asian)	1.093	[1.06-1.13]	Illumina [6627481] (imputed)	N
1525	chr12	123336788	123336789	rs10744422	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.31	intergenic	rs10744422-C	NR	5E-6	(Chinese)	1.092	[1.05-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060406-T	NR	3E-23		0.075143	[0.06-0.09] unit increase	Affymetrix [319769] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060406-T	NR	1E-22		0.0740621	[0.059-0.089] unit increase	Affymetrix [319769] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060406-T	NR	2E-11		0.0510975	[0.036-0.066] unit increase	Affymetrix [321114] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060406-T	NR	2E-9		0.045295	[0.03-0.06] unit decrease	Affymetrix [321016] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs11060406-T	NR	6E-17		0.0641041	[0.049-0.079] unit increase	Affymetrix [321169] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q24.31		rs11060406-?	NR	6E-8		0.0302241	[0.019-0.041] unit decrease	NR [6912294] (imputed)	N
1526	chr12	123339116	123339117	rs11060406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs11060406-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1526	chr12	123339357	123339358	rs2292137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2292137-G	NR	2E-19		0.0260864	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
1526	chr12	123339357	123339358	rs2292137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs2292137-G	NR	7E-9		0.0167719	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1526	chr12	123339357	123339358	rs2292137	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs2292137-G	NR	8E-14		0.0194	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1526	chr12	123345508	123345509	rs34149579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs34149579-T	NR	5E-10		0.0389804	[0.027-0.051] unit decrease	Affymetrix [321016] (imputed)	N
1526	chr12	123345508	123345509	rs34149579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs34149579-T	NR	1E-16		0.0469	[0.036-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1526	chr12	123345508	123345509	rs34149579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs34149579-T	NR	6E-10		0.0351	[0.024-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1526	chr12	123345508	123345509	rs34149579	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	12q24.31	HIP1R	rs34149579-T	0.0454	2E-14		0.032	[0.024-0.04] unit decrease	Illumina [246328]	N
1526	chr12	123345508	123345509	rs34149579	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals	up to 192,226 European ancestry individuals	12q24.31	HIP1R	rs34149579-G	0.9499	8E-15		0.0329	[0.025-0.041] unit increase	Illumina [246328]	N
1526	chr12	123348440	123348440	rs142265900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	HIP1R	rs142265900-AGAT	NR	2E-10		0.0387581	[0.027-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123348440	123348440	rs142265900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	HIP1R	rs142265900-AGAT	NR	9E-11		0.0396912	[0.028-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123350134	123350135	rs149654682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs149654682-G	0.97606	2E-8		0.0744958	[0.049-0.1] unit increase	NR [11722792] (imputed)	N
1526	chr12	123350134	123350135	rs149654682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RP11-463O12.3, VPS37B	rs149654682-A	NR	8E-11		0.0606437	[0.042-0.079] unit increase	Affymetrix [319769] (imputed)	N
1526	chr12	123350134	123350135	rs149654682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RP11-463O12.3, VPS37B	rs149654682-A	NR	6E-11		0.061172	[0.043-0.079] unit increase	Affymetrix [319769] (imputed)	N
1526	chr12	123350134	123350135	rs149654682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RP11-463O12.3, VPS37B	rs149654682-A	NR	3E-8		0.0522716	[0.034-0.071] unit increase	Affymetrix [321169] (imputed)	N
1526	chr12	123354979	123354980	rs74985067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	VPS37B	rs74985067-A	NR	8E-11		0.0509802	[0.036-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123354979	123354980	rs74985067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	VPS37B	rs74985067-A	NR	4E-11		0.0517723	[0.036-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123354979	123354980	rs74985067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	VPS37B	rs74985067-A	NR	3E-8		0.0438564	[0.028-0.059] unit decrease	Affymetrix [321169] (imputed)	N
1526	chr12	123356475	123356476	rs118162845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	VPS37B	rs118162845-T	NR	5E-9		0.0692321	[0.046-0.092] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123356475	123356476	rs118162845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	VPS37B	rs118162845-T	NR	2E-8		0.0660697	[0.043-0.089] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123356475	123356476	rs118162845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	VPS37B	rs118162845-T	NR	2E-11		0.0792839	[0.056-0.102] unit increase	Affymetrix [321016] (imputed)	N
1526	chr12	123375731	123375732	rs140689322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	VPS37B	rs140689322-A	NR	2E-11		0.0588859	[0.042-0.076] unit increase	Affymetrix [321016] (imputed)	N
1526	chr12	123383146	123383147	rs80024005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs80024005-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1526	chr12	123386494	123386495	rs76465767	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	12q24.31	ABCB9	rs76465767-C	0.02	1E-6		0.026	[0.016-0.036] unit increase	Illumina [7411206] (imputed)	N
1526	chr12	123387632	123387633	rs74615202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	VPS37B	rs74615202-G	NR	7E-11		0.0428532	[0.03-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123387632	123387633	rs74615202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	VPS37B	rs74615202-G	NR	4E-10		0.0414217	[0.028-0.054] unit decrease	Affymetrix [321114] (imputed)	N
1526	chr12	123387921	123387922	rs10847980	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	12q24.31	GPR109A	rs10847980-T	0.771	7E-6		0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1526	chr12	123400868	123400869	rs74418502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ABCB9	rs74418502-A	NR	4E-11		0.0433615	[0.03-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123400868	123400869	rs74418502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ABCB9	rs74418502-A	NR	2E-10		0.0424867	[0.029-0.055] unit decrease	Affymetrix [321169] (imputed)	N
1526	chr12	123414348	123414349	rs2270788	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q24.31	NR	rs2270788-C	0.0991554951230425	7E-6	(IGP59)	0.2364	[0.13-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
1526	chr12	123430151	123430152	rs117572343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ABCB9	rs117572343-T	NR	8E-17		0.0499327	[0.038-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123430151	123430152	rs117572343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ABCB9	rs117572343-T	NR	3E-16		0.0489373	[0.037-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1526	chr12	123430151	123430152	rs117572343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ABCB9	rs117572343-T	NR	5E-12		0.0414162	[0.03-0.053] unit increase	Affymetrix [321016] (imputed)	N
1526	chr12	123430151	123430152	rs117572343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ABCB9	rs117572343-T	NR	1E-10		0.0390594	[0.027-0.051] unit decrease	Affymetrix [321169] (imputed)	N
1526	chr12	123444506	123444507	rs58843120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs58843120-T	NR	2E-15		0.0829	[0.063-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1526	chr12	123444506	123444507	rs58843120	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs58843120-T	NR	4E-13		0.0761	[0.056-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1526	chr12	123444506	123444507	rs58843120	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q24.31	ABCB9	rs58843120-G	0.9866	2E-6		0.0608	[0.036-0.086] unit increase	Affymetrix, Illumina [at least 228985]	N
1526	chr12	123444506	123444507	rs58843120	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q24.31	ABCB9	rs58843120-G	0.9858	8E-7		0.0635	[0.038-0.089] unit increase	Affymetrix, Illumina [at least 228985]	N
1526	chr12	123444506	123444507	rs58843120	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q24.31	ABCB9	rs58843120-G	0.987	1E-8		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [at least 228985]	N
1526	chr12	123444506	123444507	rs58843120	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q24.31	ABCB9	rs58843120-G	0.986	4E-9		0.056	[0.037-0.075] unit increase	Affymetrix, Illumina [at least 228985]	N
1526	chr12	123447927	123447928	rs4275659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	12q24.31		rs4275659-C	0.688839	4E-8		0.0222698	[0.014-0.03] unit decrease	Illumina [13474682] (imputed)	N
1526	chr12	123447927	123447928	rs4275659	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.31	NR	rs4275659-?	NR	1E-6		4.82	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1526	chr12	123447927	123447928	rs4275659	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q24.31	ABCB9	rs4275659-C	0.6899	2E-7	(EA)	0.0576	[0.036-0.079] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1526	chr12	123447927	123447928	rs4275659	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	12q24.31	ABCB9	rs4275659-C	0.6899	2E-7		0.043	[0.027-0.059] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1526	chr12	123450764	123450765	rs4148856	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12q24.31	NR	rs4148856-?	NR	2E-7		0.0644	[0.04-0.089] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1526	chr12	123450764	123450765	rs4148856	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.31	MPHOSPH9	rs4148856-C	0.7814	2E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1526	chr12	123451017	123451018	rs61955196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs61955196-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1526	chr12	123457618	123457619	rs7296418	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	12q24.31	ABCB9	rs7296418-?	NR	2E-6				Illumina [874956]	N
1526	chr12	123466110	123466111	rs55742290	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12q24.31		rs55742290-T	0.7071	1E-13		66.47163	z score increase	NR [6814003]	N
1527	chr12	123470585	123470586	rs12828755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	12q24.31	PITPNM2	rs12828755-T	0.199269	1E-11		0.018705126	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1527	chr12	123477310	123477311	rs937564	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.31		rs937564-T	0.22	9E-15		7.76	z score increase	Affymetrix [9061022] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs61955214-T	NR	2E-13		0.0224127	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	PITPNM2	rs61955214-T	NR	7E-9		0.0191971	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	PITPNM2	rs61955214-C	0.684963	2E-11		0.016534854	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	PITPNM2	rs61955214-C	0.68497	1E-15		0.019642795	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	PITPNM2	rs61955214-C	0.684996	4E-12		0.016871938	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	PITPNM2	rs61955214-C	0.685003	4E-14		0.018360026	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1527	chr12	123482423	123482424	rs61955214	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	12q24.31	PITPNM2	rs61955214-?	NR	4E-10		0.4705	[0.33-0.62] unit increase	Affymetrix [11100000] (imputed)	N
1527	chr12	123483425	123483426	rs1984658	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	12q24.31	NR	rs1984658-?	NR	9E-14		1.1111112		Affymetrix, Illumina [9938587] (imputed)	N
1527	chr12	123491571	123491572	rs940904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs940904-G	NR	1E-22		0.0313899	[0.025-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1527	chr12	123491571	123491572	rs940904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs940904-G	NR	3E-21		0.0303993	[0.024-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1527	chr12	123491571	123491572	rs940904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs940904-G	NR	2E-9		0.0201275	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1527	chr12	123491571	123491572	rs940904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs940904-G	NR	3E-12		0.0225682	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1527	chr12	123491571	123491572	rs940904	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q24.31	PITPNM2	rs940904-G	0.256626736793244	2E-9		0.0499	[0.034-0.066] unit decrease	NR [5035015] (imputed)	N
1527	chr12	123492111	123492112	rs3897102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs3897102-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.31	NR	rs12820906-G	0.2436	2E-15		0.0433	[0.033-0.054] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	PITPNM2	rs12820906-G	0.2435	5E-6		0.009131	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	PITPNM2	rs12820906-G	0.2435	2E-9	(females)	0.01657	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	PITPNM2	rs12820906-G	0.2435	3E-8	(females)	0.01397	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	12q24.31	PITPNM2	rs12820906-G	0.2435	1E-7		0.01108	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1527	chr12	123493122	123493123	rs12820906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	12q24.31	PITPNM2	rs12820906-G	0.2452	7E-11		0.02736923	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1527	chr12	123510054	123510055	rs186407219	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	PITPNM2	rs186407219-A	0.998	1E-9		0.1266	[0.086-0.167] unit increase	Affymetrix [18391927] (imputed)	N
1527	chr12	123519111	123519112	rs17884869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	12q24.31		rs17884869-A	NR	1E-44		0.1113	[0.096-0.127] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1527	chr12	123519111	123519112	rs17884869	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	12q24.31	NR	rs17884869-A	0.02463	8E-39		0.009579	[0.0081-0.011] unit decrease	Affymetrix [NR] (imputed)	N
1527	chr12	123519111	123519112	rs17884869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.31	NR	rs17884869-A	NR	2E-11		0.0542	[0.038-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1527	chr12	123519111	123519112	rs17884869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	12q24.31	NR	rs17884869-A	NR	2E-43		0.1118	[0.096-0.128] unit decrease	Affymetrix [9000000] (imputed)	N
1527	chr12	123558704	123558705	rs7964876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	PITPNM2	rs7964876-T	NR	2E-8		0.0324243	[0.021-0.044] unit increase	Affymetrix [323123] (imputed)	N
1527	chr12	123560288	123560289	rs1260294	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	12q24.31	NR	rs1260294-T	0.8004	2E-8		1.0430791	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1527	chr12	123560288	123560289	rs1260294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	12q24.31		rs1260294-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1527	chr12	123569374	123569375	rs4148863	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q24.31	PITPNM2	rs4148863-G	0.2843	8E-9		0.012663034	[0.0084-0.017] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1527	chr12	123575741	123575742	rs1727307	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	12q24.31	NR	rs1727307-A	NR	3E-9		5.926	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1527	chr12	123575741	123575742	rs1727307	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	PITPNM2	rs1727307-A	NR	5E-13		0.02324638	[0.017-0.03] unit increase	Affymetrix [NR]	N
1527	chr12	123575741	123575742	rs1727307	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	12q24.31	PITPNM2	rs1727307-?	NR	3E-6				Illumina [874956]	N
1527	chr12	123575883	123575884	rs61955225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs61955225-C	NR	2E-9		0.0516	[0.035-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1527	chr12	123593381	123593382	rs7132277	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	12q24.31	PITPNM2	rs7132277-C	0.81	3E-11				NR [> 9500000] (imputed)	N
1527	chr12	123593381	123593382	rs7132277	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	12q24.31	PITPNM2	rs7132277-A	0.19	2E-13		1.12		Illumina [161311]	N
1527	chr12	123593484	123593485	rs7299943	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	12q24.31	NR	rs7299943-?	NR	2E-8				Illumina [up to 5582932] (imputed)	N
1527	chr12	123593898	123593899	rs73230058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs73230058-T	NR	2E-26		0.0459103	[0.037-0.054] unit increase	Affymetrix [319769] (imputed)	N
1527	chr12	123593898	123593899	rs73230058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs73230058-T	NR	6E-26		0.0453392	[0.037-0.054] unit increase	Affymetrix [319769] (imputed)	N
1527	chr12	123593898	123593899	rs73230058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs73230058-T	NR	1E-13		0.032166	[0.024-0.041] unit increase	Affymetrix [321114] (imputed)	N
1527	chr12	123593898	123593899	rs73230058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs73230058-T	NR	4E-18		0.0378321	[0.029-0.046] unit increase	Affymetrix [321169] (imputed)	N
1527	chr12	123600085	123600086	rs1727326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs1727326-C	NR	8E-11		0.0266734	[0.019-0.035] unit increase	Affymetrix [321016] (imputed)	N
1527	chr12	123600085	123600086	rs1727326	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	12q24.31	KNTC1, PITPNM2	rs1727326-C	0.15	2E-9		0.19	[0.13-0.25] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1527	chr12	123600863	123600864	rs11061615	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11061615-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1528	chr12	123604052	123604053	rs7975763	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q24.31	PITPNM2	rs7975763-T	NR	3E-13		1.085305	NR	Affymetrix, Illumina [8278136] (imputed)	N
1528	chr12	123614812	123614813	rs2510885	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.31	CDK2AP1	rs2510885-C	0.75234375	9E-6	(CDK2AP1, 9450_18_3)	0.12424945	[0.07-0.179] unit decrease	Illumina [> 1000000] (imputed)	N
1528	chr12	123616513	123616514	rs1727294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	PITPNM2	rs1727294-A	0.2147	8E-14	(EA)	0.0323	[0.024-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1528	chr12	123616513	123616514	rs1727294	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	PITPNM2	rs1727294-A	0.2147	6E-14	(EA, women)	0.0414	[0.031-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1528	chr12	123618361	123618362	rs6488864	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.31		rs6488864-G	0.22	7E-16		8.07	z score increase	Affymetrix [9061022] (imputed)	N
1528	chr12	123618361	123618362	rs6488864	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.31	NR	rs6488864-G	0.2028	3E-12				NR [9056863] (imputed)	N
1528	chr12	123620267	123620268	rs1619561	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	12q24.31	ABCB9, ARL6IP4, C12orf65, CCDC62, CDK2AP1, HIP1R, LOC100507091, MIR4304, MIR8072, MPHOSPH9, OGFOD2, PITPNM2, RILPL2, SBNO1, SETD8, VPS37B	rs1619561-C	0.7659	2E-6		1.1511943		Illumina [8265319] (imputed)	N
1528	chr12	123624008	123624009	rs71456786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs71456786-T	NR	9E-9		0.0517533	[0.034-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123624008	123624009	rs71456786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs71456786-T	NR	2E-8		0.0510286	[0.033-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123627015	123627016	rs1106241	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	PITPNM2	rs1106241-T	NR	1E-13		0.025936903	[0.019-0.033] unit increase	Affymetrix [NR]	N
1528	chr12	123630838	123630839	rs117389598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs117389598-T	NR	2E-9		0.0399702	[0.027-0.053] unit increase	Affymetrix [321016] (imputed)	N
1528	chr12	123632929	123632930	rs1727302	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12q24.31		rs1727302-A	0.7295	7E-16		77.256454	z score increase	NR [6814003]	N
1528	chr12	123632929	123632930	rs1727302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	PITPNM2	rs1727302-G	NR	2E-8		0.018951	[0.012-0.026] unit increase	Affymetrix [321788] (imputed)	N
1528	chr12	123632929	123632930	rs1727302	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	12q24.31		rs1727302-?	NR	3E-16		0.0301	NR unit decrease	NR [4502103] (imputed)	N
1528	chr12	123635095	123635096	rs1716183	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.31		rs1716183-C	0.822603	2E-8		0.0297747	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1528	chr12	123635095	123635096	rs1716183	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	12q24.31		rs1716183-C	0.822603	4E-8		0.0290176	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1528	chr12	123635095	123635096	rs1716183	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	12q24.31	PITPNM2	rs1716183-?	NR	4E-11		1.067	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
1528	chr12	123639539	123639539	rs67657805	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 42)	19,670 European ancestry individuals	NA	12q24.31		rs67657805-?	NR	3E-8				NR [9705931] (imputed)	N
1528	chr12	123640852	123640853	rs1727313	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	12q24.31	MPHOSPH9	rs1727313-C		1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
1528	chr12	123642537	123642538	rs1716162	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	MPHOSPH9	rs1716162-A	NR	2E-10		0.023372525	[0.016-0.031] unit decrease	Affymetrix [NR]	N
1528	chr12	123644042	123644043	rs61041384	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.31	MPHOSPH9	rs61041384-C	NR	6E-13		1.1223345	[1.09-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1528	chr12	123650334	123650335	rs1615350	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	12q24.31	MPHOSPH9, PITPNM2	rs1615350-?		5E-10				NR [6786993] (imputed)	N
1528	chr12	123650334	123650335	rs1615350	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	12q24.31	MPHOSPH9	rs1615350-?	NR	1E-25		0.02327281	[0.019-0.028] unit decrease	NR [7306098]	N
1528	chr12	123650334	123650335	rs1615350	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.31	MPHOSPH9	rs1615350-C	NR	4E-12	(EA)	1.0888501	[1.06-1.11]	Illumina [6627481] (imputed)	N
1528	chr12	123650334	123650335	rs1615350	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.31	MPHOSPH9	rs1615350-C	NR	1E-17		1.0928961	[1.07-1.11]	Illumina [6627481] (imputed)	N
1528	chr12	123650334	123650335	rs1615350	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.31	ABCB9, MPHOSPH9, OGFOD2, PITPNM2, SETD8	rs1615350-C	NR	6E-18		1.091703	[1.07-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1528	chr12	123651737	123651738	rs77983490	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q24.31	NR	rs77983490-A	0.0256532	5E-12		0.150362	[0.11-0.19] unit increase	Affymetrix [17914406] (imputed)	N
1528	chr12	123653591	123653592	rs2851437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MPHOSPH9	rs2851437-C	NR	2E-8		0.0184921	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123653591	123653592	rs2851437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MPHOSPH9	rs2851437-C	NR	1E-10		0.0211396	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
1528	chr12	123653591	123653592	rs2851437	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	MPHOSPH9	rs2851437-A	NR	2E-9		0.021033904	[0.014-0.028] unit decrease	Affymetrix [NR]	N
1528	chr12	123656724	123656725	rs1790100	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	12q24.31	MPHOSPH9	rs1790100-G	0.24	7E-7		1.11	[1.00-1.22]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1528	chr12	123657337	123657338	rs2049114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q24.31		rs2049114-C	NR	3E-14		0.0223	[0.017-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1528	chr12	123660099	123660100	rs79652218	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs79652218-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1528	chr12	123660099	123660100	rs79652218	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs79652218-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1528	chr12	123662407	123662407	rs35556097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	12q24.31		rs35556097-AC	NR	6E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1528	chr12	123665112	123665113	rs2851447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.31		rs2851447-C	NR	8E-9		0.0428	[0.028-0.057] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1528	chr12	123665112	123665113	rs2851447	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q24.31	NR	rs2851447-?		1E-9				NR [8377093]	N
1528	chr12	123665112	123665113	rs2851447	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12q24.31	NR	rs2851447-?		1E-9				NR [8377093]	N
1528	chr12	123665112	123665113	rs2851447	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	12q24.31	ABCB9, ARL6IP4, C12orf65, CDK2AP1, LOC100507091, MIR4304, MIR8072, MPHOSPH9, OGFOD2, PITPNM2, RILPL2, SBNO1, SETD8	rs2851447-?	NR	6E-16		1.091	[1.07-1.11]	Illumina [8000000] (imputed)	N
1528	chr12	123665112	123665113	rs2851447	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	12q24.31	ABCB9, ARL6IP4, C12orf65, CDK2AP1, KMT5A, LOC100507091, MIR4304, MIR8072, MPHOSPH9, OGFOD2, PITPNM2, RILPL2, SBNO1	rs2851447-?		8E-12		1.0752687	[1.05-1.1]	Affymetrix, Illumina [NR]	N
1528	chr12	123665112	123665113	rs2851447	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	12q24.31	ABCB9, ARL6IP4, C12orf65, CDK2AP1, MPHOSPH9, OGFOD2, PITPNM2, RILPL2, SBNO1, SETD8	rs2851447-G	0.259	2E-14		1.0928961	[1.07-1.12]	Affymetrix, Illumina [9005918] (imputed)	N
1528	chr12	123667353	123667354	rs2851436	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	12q24.31	MPHOSPH9	rs2851436-T	NR	4E-8		1.0638298	[1.04-1.1]	Affymetrix, Illumina [12923718] (imputed)	N
1528	chr12	123667353	123667354	rs2851436	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12q24.31	NR	rs2851436-?	NR	2E-7		0.0649	[0.04-0.089] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1528	chr12	123667949	123667950	rs1790105	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.31	Intergenic	rs1790105-T	0.2179	4E-16	(MTAG)	0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1528	chr12	123669234	123669235	rs1790135	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	12q24.31	NR	rs1790135-T	0.7247	2E-9		0.07412623	[0.05-0.098] unit decrease	NR [NR]	N
1528	chr12	123672517	123672518	rs1790086	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.31		rs1790086-?	NR	3E-17		0.0202386	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1528	chr12	123676762	123676763	rs2102949	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	12q24.31		rs2102949-?	NR	2E-11		0.0202	NR unit decrease	NR [4484088] (imputed)	N
1528	chr12	123676762	123676763	rs2102949	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	12q24.31		rs2102949-?	NR	1E-12		0.0236	NR unit decrease	NR [4425810] (imputed)	N
1528	chr12	123676762	123676763	rs2102949	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	12q24.31		rs2102949-?	NR	2E-13		0.0252	NR unit decrease	NR [4428082] (imputed)	N
1528	chr12	123676762	123676763	rs2102949	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.31	NR	rs2102949-G	NR	2E-14		1.098901	[NR]	Illumina [7158791] (imputed)	N
1528	chr12	123678364	123678366	rs34339938	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	12q24.31	MPHOSPH9	rs34339938-G	0.784	1E-12		0.0319494	[0.023-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1528	chr12	123682080	123682081	rs1716180	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	12q24.31	NR	rs1716180-?	NR	2E-23		1.0989977	[1.08-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
1528	chr12	123682395	123682396	rs11614406	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.31	NR	rs11614406-C	0.2513	3E-14				NR [9056863] (imputed)	N
1528	chr12	123683154	123683155	rs1790089	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.31		rs1790089-?	NR	3E-17		0.0202879	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1528	chr12	123688282	123688283	rs144354883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MPHOSPH9	rs144354883-A	NR	7E-11		0.0583412	[0.041-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123688282	123688283	rs144354883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MPHOSPH9	rs144354883-A	NR	3E-10		0.0566388	[0.039-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123688483	123688484	rs11057189	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs11057189-?	NR	5E-10				NR [2625067]	N
1528	chr12	123689520	123689521	rs2695478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.31		rs2695478-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1528	chr12	123694249	123694250	rs2851443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	MPHOSPH9	rs2851443-C	NR	2E-8		0.0185283	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1528	chr12	123698602	123698603	rs1727324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.31	MPHOSPH9	rs1727324-T	0.799043	1E-27		0.030667596	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1528	chr12	123698602	123698603	rs1727324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	12q24.31	NR	rs1727324-T	0.798723	2E-34		0.027916	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1528	chr12	123698789	123698790	rs1727323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	MPHOSPH9	rs1727323-T	NR	8E-14		0.028142	[0.021-0.036] unit increase	Affymetrix [323123] (imputed)	N
1528	chr12	123701352	123701353	rs1727319	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	12q24.31	MPHOSPH9	rs1727319-?	NR	2E-8		0.03084	[0.02-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1528	chr12	123703422	123703422	rs10654220	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	12q24.31	NR	rs10654220-AGTT	0.8	7E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1528	chr12	123703422	123703422	rs10654220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	12q24.31	MPHOSPH9	rs10654220-AGTT	0.7994	8E-13		0.03265327	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1528	chr12	123708489	123708490	rs10744149	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.31		rs10744149-T	0.23	2E-23		9.97	z score increase	Affymetrix [9061022] (imputed)	N
1528	chr12	123712415	123712416	rs2851435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs2851435-A	0.795977	6E-33				Affymetrix, Illumina [24588908] (imputed)	N
1528	chr12	123716929	123716930	rs1716169	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	12q24.31	MPHOSPH9	rs1716169-T	NR	4E-6	(men)	0.2342875	[0.13-0.33] unit decrease	Illumina [5527232] (imputed)	N
1528	chr12	123719955	123719955	rs568819278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MPHOSPH9, C12orf65	rs568819278-TTG	NR	3E-11		0.0465465	[0.033-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123719955	123719955	rs568819278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MPHOSPH9, C12orf65	rs568819278-TTG	NR	6E-12		0.0483196	[0.035-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1528	chr12	123719955	123719955	rs568819278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	MPHOSPH9, C12orf65	rs568819278-TTG	NR	6E-11		0.0463417	[0.032-0.06] unit decrease	Affymetrix [321169] (imputed)	N
1528	chr12	123728979	123728979	rs111694265	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs111694265-C	0.90087	1E-8		0.0357685	[0.024-0.048] unit decrease	NR [11722792] (imputed)	N
1528	chr12	123728979	123728979	rs111694265	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs111694265-C	0.90087	2E-8		0.0352784	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
1528	chr12	123731422	123731423	rs11532322	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	12q24.31	C12orf65, OGFOD2, RILPL2, MIR4304, SETD8, MPHOSPH9, SBNO1, ABCB9, ARL6IP4, PITPNM2, CDK2AP1	rs11532322-A	0.318	2E-8		1.094	[1.06-1.13]	Affymetrix, Illumina [9871789]	N
1529	chr12	123732769	123732769	rs753350451	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	12q24.31		rs753350451-?	NR	3E-10		0.93220735	[0.911966888-0.952897055]	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123734773	123734774	rs4268544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.31	Intergenic	rs4268544-T	0.2219	5E-10		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	C12orf65	rs10773000-T	NR	1E-16		0.0248657	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	C12orf65	rs10773000-T	NR	6E-16		0.0242385	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	C12orf65	rs10773000-T	NR	1E-13		0.0221793	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	C12orf65	rs10773000-T	NR	7E-10		0.0201074	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	C12orf65	rs10773000-T	NR	2E-10		0.0193896	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1529	chr12	123736083	123736084	rs10773000	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.31	NR	rs10773000-G	0.672	6E-17		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1529	chr12	123737932	123737933	rs76582395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	C12orf65, RP11-282O18.3	rs76582395-T	NR	4E-10		0.0283146	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1529	chr12	123741931	123741932	rs11057214	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs11057214-G	0.943349	1E-11		0.030495	[0.022-0.039] unit decrease	NR [NR]	N
1529	chr12	123742060	123742061	rs1969355	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12q24.31		rs1969355-A	0.7313	6E-16		77.407295	z score increase	NR [6814003]	N
1529	chr12	123742060	123742061	rs1969355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	C12orf65, RP11-282O18.3	rs1969355-G	NR	8E-27		0.0350622	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1529	chr12	123742060	123742061	rs1969355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	C12orf65, RP11-282O18.3	rs1969355-G	NR	6E-25		0.0337651	[0.027-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1529	chr12	123742060	123742061	rs1969355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	C12orf65, RP11-282O18.3	rs1969355-G	NR	7E-17		0.0276212	[0.021-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1529	chr12	123742060	123742061	rs1969355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	12q24.31	Intergenic	rs1969355-A	0.7515	4E-17	(MTAG)	0.0223	[0.017-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr12	123742692	123742693	rs63406760	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	12q24.31	CDK2AP1, C12orf65	rs63406760-?	NR	3E-24		1.0638298	[1.05-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1529	chr12	123742692	123742693	rs63406760	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	12q24.31	C12orf65, CDK2AP1	rs63406760-T	0.77	3E-13		1.047	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1529	chr12	123743882	123743883	rs10732573	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	12q24.31	ENSG00000235423	rs10732573-?	NR	1E-11		6.748	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1529	chr12	123744954	123744955	rs1980251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	12q24.31		rs1980251-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1529	chr12	123746960	123746961	rs10773002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs10773002-A	0.252	3E-30		0.0185	[0.015-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr12	123746960	123746961	rs10773002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs10773002-A	0.252	2E-35	(MTAG)	0.0188	[0.016-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr12	123746960	123746961	rs10773002	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	12q24.31	NR	rs10773002-A	0.2534	8E-18		0.0219746	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1529	chr12	123747782	123747783	rs7312955	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	12q24.31	NR	rs7312955-?		4E-8				NR [8377093]	N
1529	chr12	123747782	123747783	rs7312955	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	12q24.31	NR	rs7312955-?		4E-8				NR [8377093]	N
1529	chr12	123747782	123747783	rs7312955	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q24.31	Intergenic	rs7312955-A	0.3117	1E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr12	123748666	123748666	rs758436299	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.31		rs758436299-?	NR	2E-20		0.0235944	[0.018-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1529	chr12	123750227	123750228	rs12824957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.31		rs12824957-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1529	chr12	123751338	123751339	rs2030401	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.31	NR	rs2030401-?	NR	3E-7		5.112	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1529	chr12	123751338	123751339	rs2030401	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	CDK2AP1	rs2030401-A	NR	2E-8		0.017782472	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1529	chr12	123753371	123753372	rs61953394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q24.31		rs61953394-C	NR	6E-12		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1529	chr12	123753491	123753492	rs10846491	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.31	Intergenic	rs10846491-C	0.2205	3E-28	(MTAG)	0.0219	[0.018-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr12	123757503	123757504	rs75759977	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	12q24.31		rs75759977-G	0.949426	2E-8		0.0528409	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
1529	chr12	123757503	123757504	rs75759977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs75759977-T	NR	1E-15		0.0457	[0.035-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1529	chr12	123757503	123757504	rs75759977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs75759977-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123757860	123757861	rs1109559	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	12q24.31		rs1109559-G	0.31	2E-7		1.71	[1.06-2.36] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1529	chr12	123757860	123757861	rs1109559	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	12q24.31	CDK2AP1	rs1109559-C	0.324	3E-6		0.727	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1529	chr12	123757860	123757861	rs1109559	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	12q24.31	CDK2AP1	rs1109559-A	NR	3E-10		0.01976879	[0.014-0.026] unit decrease	Affymetrix [NR]	N
1529	chr12	123758234	123758235	rs7953929	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	12q24.31	NR	rs7953929-G	NR	2E-9		0.0178	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1529	chr12	123758234	123758235	rs7953929	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	12q24.31	NR	rs7953929-G	NR	6E-11		0.0194	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1529	chr12	123758234	123758235	rs7953929	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.31	CDK2AP1	rs7953929-C	0.80099	2E-14		0.0176751	[0.013-0.022] unit increase	NR [13737936] (imputed)	N
1529	chr12	123761685	123761686	rs10846497	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	CDK2AP1	rs10846497-A	0.907426	5E-49		0.0498539	[0.043-0.056] unit decrease	Affymetrix [NR] (imputed)	N
1529	chr12	123763338	123763339	rs10846498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RNA5SP375	rs10846498-A	NR	1E-15		0.0490317	[0.037-0.061] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123763338	123763339	rs10846498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RNA5SP375	rs10846498-A	NR	2E-15		0.0484849	[0.036-0.06] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123765689	123765690	rs75033629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RNA5SP375	rs75033629-C	NR	2E-10		0.0507602	[0.035-0.066] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123765689	123765690	rs75033629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RNA5SP375	rs75033629-C	NR	2E-10		0.0506	[0.035-0.066] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123767928	123767929	rs7306755	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	12q24.31	RNA5SP375	rs7306755-A	0.1814	9E-14		0.018815057	[0.014-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
1529	chr12	123767928	123767929	rs7306755	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	12q24.31	NR	rs7306755-A	0.2153	1E-10		1.0468224	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1529	chr12	123770139	123770140	rs74354194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs74354194-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123771014	123771015	rs71444571	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	12q24.31	RNA5SP375	rs71444571-A	0.2014	2E-14		0.03388726	[0.025-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1529	chr12	123771031	123771032	rs9739070	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	12q24.31	CDK2AP1, SBNO1	rs9739070-?	NR	1E-11		1.067	[1.047-1.087]	Illumina [12845910] (imputed)	N
1529	chr12	123775126	123775127	rs10773003	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.31	SBNO1	rs10773003-A	0.296	6E-6	(Asian initial, BMI unadjusted)	0.0387	[0.022-0.056] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1529	chr12	123775126	123775127	rs10773003	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.31	SBNO1	rs10773003-A	0.0884	5E-17	(Trans-ethnic initial)	0.0431	[0.032-0.054] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1529	chr12	123775126	123775127	rs10773003	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	12q24.31	ZNF664, SBNO1	rs10773003-A	0.31	6E-10	(BMI adjusted)	0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1529	chr12	123776568	123776568	rs5801512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.31	SBNO1	rs5801512-AT	0.735013	4E-19		0.025006365	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1529	chr12	123778754	123778754	rs111686666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs111686666-ACGGTAAG	NR	1E-8		0.0356996	[0.024-0.048] unit increase	Affymetrix [321114] (imputed)	N
1529	chr12	123778754	123778754	rs111686666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs111686666-ACGGTAAG	NR	3E-11		0.0414965	[0.029-0.054] unit increase	Affymetrix [321169] (imputed)	N
1529	chr12	123781205	123781206	rs11057248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q24.31		rs11057248-C	NR	8E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1529	chr12	123785525	123785526	rs113707571	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs113707571-A	0.929449	2E-10		0.0500518	[0.035-0.066] unit decrease	NR [11722792] (imputed)	N
1529	chr12	123785525	123785526	rs113707571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	12q24.31		rs113707571-C	NR	8E-9		0.0279	[0.018-0.037] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1529	chr12	123791648	123791649	rs73231956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	SBNO1	rs73231956-C	NR	5E-11		0.0294775	[0.021-0.038] unit increase	Affymetrix [323123] (imputed)	N
1529	chr12	123791648	123791649	rs73231956	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	12q24.31	NR	rs73231956-?	NR	4E-8	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs4759375-C	0.915117	2E-8		0.0395274	[0.026-0.053] unit decrease	NR [11722792] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs4759375-C	0.915117	3E-9		0.0413481	[0.028-0.055] unit decrease	NR [11722792] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.31	SBNO1	rs4759375-C	0.915534	6E-11		0.00590896	[0.0041-0.0078] unit decrease	Affymetrix [13995440] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.31		rs4759375-T	0.1467	3E-7		0.0091	[0.0056-0.0126] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	SBNO1	rs4759375-T	0.0919	2E-24		0.0487	[0.039-0.058] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4759375-C	NR	5E-8		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4759375-C	0.902	7E-6	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4759375-C	NR	1E-9		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	SBNO1	rs4759375-T	0.08	3E-8		0.056	[NR] unit increase	NR [NR] (imputed)	N
1529	chr12	123796237	123796238	rs4759375	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	SBNO1	rs4759375-T	0.06	8E-9		0.86	[0.55-1.17] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1529	chr12	123796278	123796279	rs61953423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	12q24.31	SBNO1	rs61953423-C	0.058551	2E-11		0.032441027	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1529	chr12	123796282	123796283	rs11057258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	12q24.31		rs11057258-C	NR	3E-9		0.044	[0.029-0.059] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1529	chr12	123799973	123799974	rs6488868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q24.31	SBNO1	rs6488868-G	0.737716	2E-19		0.022823421	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1529	chr12	123805260	123805261	rs61760909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs61760909-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123806218	123806219	rs1060105	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	12q24.31	SBNO1	rs1060105-C	NR	2E-8		1.07	[1.04-1.1]	Affymetrix, Illumina [11554240] (imputed)	N
1529	chr12	123806218	123806219	rs1060105	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	12q24.31	MPHOSPH9	rs1060105-C	0.796	4E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
1529	chr12	123806218	123806219	rs1060105	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	MPHOSPH9	rs1060105-C	0.815	1E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
1529	chr12	123806218	123806219	rs1060105	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	12q24.31	MPHOSPH9	rs1060105-C	0.815	6E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
1529	chr12	123806218	123806219	rs1060105	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	12q24.31	SBNO1	rs1060105-T	0.2092	3E-8		0.184	mmHg decrease	Illumina [242296]	N
1529	chr12	123808072	123808073	rs11057270	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	12q24.31	NR	rs11057270-?	NR	8E-7		0.0619	[0.037-0.086] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1529	chr12	123812196	123812197	rs11057272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs11057272-T	NR	3E-9		0.049405	[0.033-0.066] unit increase	Affymetrix [321114] (imputed)	N
1529	chr12	123814465	123814466	rs11057273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	12q24.31		rs11057273-C	NR	9E-16		0.0242	[0.018-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	6E-24		0.0746254	[0.06-0.089] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	1E-23		0.0742478	[0.06-0.089] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	4E-11		0.0493744	[0.035-0.064] unit increase	Affymetrix [321114] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	4E-9		0.0454201	[0.03-0.06] unit decrease	Affymetrix [321788] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	1E-10		0.0474309	[0.033-0.062] unit decrease	Affymetrix [321016] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs147530811-A	NR	3E-14		0.0568743	[0.042-0.072] unit increase	Affymetrix [321169] (imputed)	N
1529	chr12	123817476	123817477	rs147530811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs147530811-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123817568	123817569	rs12824685	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	12q24.31	ABCB9, OGFOD2, ARL6IP4, PITPNM2, MPHOSPH9, C12orf65, CDK2AP1, SBNO1, SETD8, RILPL2	rs12824685-?		1E-8				NR [7428630] (imputed)	N
1529	chr12	123817648	123817649	rs11611694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.31		rs11611694-T	NR	7E-15		0.0222	[0.017-0.028] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1529	chr12	123822710	123822711	rs7980687	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	12q24.31	NR	rs7980687-A	0.1995	1E-9		0.085341804	[0.058-0.113] z score increase	NR [1977400] (imputed)	N
1529	chr12	123822710	123822711	rs7980687	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.31	SBNO1	rs7980687-G		2E-11		0.196	unit increase	Affymetrix [at least 2696785] (imputed)	N
1529	chr12	123822710	123822711	rs7980687	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q24.31	SBNO1	rs7980687-A	0.205	1E-26		0.039	[0.031-0.047] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1529	chr12	123822710	123822711	rs7980687	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	12q24.31	SBNO1, SETD8, RILPL2, C12orf65, MPHOSPH9, SNRNP35, RILPL1, PITPNM2, TMED2	rs7980687-A	0.2	7E-8		0.029	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123822710	123822711	rs7980687	22504419	Taal HR	2012-04-15	Nat Genet	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	12q24.31	SBNO1	rs7980687-A	0.20	8E-9		0.074	[0.049-0.099] SD increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1529	chr12	123823545	123823546	rs11830103	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	12q24.31	SBNO1	rs11830103-A	0.78	4E-15		0.035	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1529	chr12	123824634	123824635	rs67624109	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	12q24.31	NA	rs67624109-T		5E-11		0.0147149	[0.01-0.019] unit decrease	Illumina [13288253] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.31	SBNO1	rs7298909-?	NR	6E-12		0.00814	[0.0055-0.0108] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SBNO1	rs7298909-T	NR	3E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SBNO1	rs7298909-T	NR	2E-29				Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SBNO1	rs7298909-T	NR	1E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SBNO1	rs7298909-T	NR	5E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SBNO1	rs7298909-T	NR	3E-15	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SBNO1	rs7298909-T	NR	2E-31				Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SBNO1	rs7298909-T	NR	9E-24		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SBNO1	rs7298909-T	NR	2E-11	(Asian)	0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SBNO1	rs7298909-T	NR	2E-10	(EA)	0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	SBNO1	rs7298909-T	NR	3E-17		0.0111	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123830938	123830939	rs7298909	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	SBNO1	rs7298909-T	NR	3E-14	(Asian)	0.01185	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123833520	123833521	rs9300255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	12q24.31	SBNO1	rs9300255-C	0.1993	3E-9		0.02683478	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1529	chr12	123835232	123835233	rs56116847	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	12q24.31	NR	rs56116847-A	0.36	3E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1529	chr12	123837002	123837003	rs73231994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SBNO1	rs73231994-A	NR	2E-17		0.0710167	[0.055-0.087] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123837002	123837003	rs73231994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs73231994-A	NR	3E-17		0.070318	[0.054-0.087] unit increase	Affymetrix [319769] (imputed)	N
1529	chr12	123837002	123837003	rs73231994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	SBNO1	rs73231994-A	NR	1E-12		0.0597028	[0.043-0.076] unit increase	Affymetrix [321169] (imputed)	N
1529	chr12	123837002	123837003	rs73231994	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs73231994-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123837290	123837291	rs77866843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.31		rs77866843-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1529	chr12	123843378	123843379	rs61955083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs61955083-T	NR	3E-10		0.0516	[0.036-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1529	chr12	123846617	123846618	rs28555076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs28555076-G	NR	1E-20		0.0653	[0.052-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1529	chr12	123846617	123846618	rs28555076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs28555076-G	NR	4E-20		0.0645	[0.051-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1529	chr12	123847840	123847841	rs28553365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.31	NR	rs28553365-T	NR	2E-9		0.0432	[0.029-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1529	chr12	123847840	123847841	rs28553365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	12q24.31	NR	rs28553365-T	NR	6E-11		0.0452	[0.032-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1529	chr12	123851371	123851372	rs61955089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.31	SBNO1	rs61955089-C	0.026498	6E-11		0.04507477	[0.032-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1529	chr12	123852476	123852477	rs117718416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs117718416-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123856997	123856998	rs28582096	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.31	NR	rs28582096-G	0.795	2E-13		1.0559661	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1529	chr12	123858851	123858852	rs117560412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs117560412-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1529	chr12	123861451	123861452	rs28413626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	12q24.31		rs28413626-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1529	chr12	123861451	123861452	rs28413626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	12q24.31		rs28413626-G	0.787	3E-16				Affymetrix [10369434] (imputed)	N
1529	chr12	123861451	123861452	rs28413626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	12q24.31		rs28413626-A	0.21359	2E-21		0.025658833	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1529	chr12	123861451	123861452	rs28413626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	12q24.31		rs28413626-A	0.213593	7E-32		0.03178092	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1529	chr12	123861451	123861452	rs28413626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	12q24.31	Intergenic	rs28413626-G	0.7787	7E-17		0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1530	chr12	123863619	123863620	rs28583837	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	12q24.31	PITPNM2	rs28583837-A	0.22	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
1530	chr12	123867993	123867994	rs28516750	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	intergenic	rs28516750-A	0.8985	2E-12		0.0303	[0.022-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1530	chr12	123873241	123873242	rs28533432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs28533432-T	0.697066	5E-31				Affymetrix, Illumina [23472807] (imputed)	N
1530	chr12	123873241	123873242	rs28533432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.31	NR	rs28533432-T	0.699647	7E-33		0.025074	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1530	chr12	123875649	123875650	rs28573826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.31	SETD8	rs28573826-T	0.02647	4E-11		0.04536468	[0.032-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1530	chr12	123883405	123883406	rs28532037	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs28532037-A	0.878544	6E-16				Affymetrix, Illumina [19872809] (imputed)	N
1530	chr12	123883405	123883406	rs28532037	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	12q24.31	NR	rs28532037-A	0.906507	4E-18		0.029653	[0.023-0.036] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1530	chr12	123884069	123884070	rs28377694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SETD8	rs28377694-G	NR	4E-9		0.0186849	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1530	chr12	123884069	123884070	rs28377694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.31		rs28377694-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1530	chr12	123885483	123885484	rs28866344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	12q24.31	SETD8	rs28866344-G	0.9067824	8E-14		0.028478652	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1530	chr12	123885927	123885928	rs112196150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	12q24.31	SETD8	rs112196150-C	0.057083	1E-11		0.033335987	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1530	chr12	123885929	123885930	rs370591186	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs370591186-T	0.0289567	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1530	chr12	123885929	123885930	rs370591186	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	12q24.31	NR	rs370591186-T	0.026417	2E-13		0.047734	[0.035-0.06] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1530	chr12	123885973	123885974	rs28768122	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	12q24.31		rs28768122-T	0.24	5E-22				Affymetrix [10369434] (imputed)	N
1530	chr12	123885973	123885974	rs28768122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs28768122-?	NR	8E-26				Affymetrix [~ 8270000] (imputed)	N
1530	chr12	123885973	123885974	rs28768122	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.31		rs28768122-T	0.2471	6E-27	(conditional-joint)	0.018	[0.015-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1530	chr12	123890275	123890276	rs28576953	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	KMT5A	rs28576953-T	0.2048	6E-38		0.0301	[0.026-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1530	chr12	123890275	123890276	rs28576953	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	12q24.31	NA	rs28576953-C	0.7908	1E-12	(Female)	1.0672358	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1530	chr12	123890275	123890276	rs28576953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q24.31		rs28576953-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1530	chr12	123890892	123890893	rs28496545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	12q24.31		rs28496545-T	0.739487	6E-12		0.0368659	[0.026-0.047] unit decrease	Illumina [13465896] (imputed)	N
1530	chr12	123892933	123892934	rs6576	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	12q24.31		rs6576-T	0.7463	6E-12		58.579216	z score increase	NR [6814003]	N
1530	chr12	123893221	123893222	rs111937532	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q24.31	NR	rs111937532-G	0.0256591	2E-14		0.16712	[0.12-0.21] unit increase	Affymetrix [17914406] (imputed)	N
1530	chr12	123893909	123893910	rs28642812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.31		rs28642812-C	NR	6E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1530	chr12	123893909	123893910	rs28642812	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	12q24.31	KMT5A, RILPL2	rs28642812-C	0.72	2E-15		7.97	z-score increase	Affymetrix [4312306] (imputed)	N
1530	chr12	123895052	123895053	rs56309603	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.31	NR	rs56309603-?	NR	8E-7		4.942	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1530	chr12	123895262	123895263	rs28569936	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	12q24.31	SETD8	rs28569936-T	0.9265	4E-8		0.2799	[0.18-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs28577594-G	NR	6E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs28577594-G	0.291	6E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs28577594-G	NR	1E-14		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs28577594-G	0.291	5E-12	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.31	KMT5A, RILPL2	rs28577594-?	NR	2E-9		0.0366	[0.025-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
1530	chr12	123895905	123895906	rs28577594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12q24.31	SETD8, RILPL2	rs28577594-C	0.7236	6E-13		0.02904128	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1530	chr12	123899517	123899518	rs28667979	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	12q24.31	NR	rs28667979-?	NR	4E-7	(AA)	23.79	[22.24-25.34]	Illumina [905956]	N
1530	chr12	123901479	123901480	rs28713448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28713448-T	NR	1E-20		0.0266579	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123901479	123901480	rs28713448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28713448-T	NR	3E-19		0.0257562	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123902360	123902361	rs28481863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs28481863-?	NR	2E-70				NR [~ 8900000] (imputed)	N
1530	chr12	123908289	123908290	rs28376121	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.31	RILPL2	rs28376121-T	0.8022	5E-8		0.0445	[0.028-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1530	chr12	123909609	123909610	rs28520455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28520455-C	NR	3E-13		0.0212763	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
1530	chr12	123909609	123909610	rs28520455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28520455-C	NR	1E-15		0.0233308	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
1530	chr12	123912212	123912213	rs28659953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs28659953-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1530	chr12	123913432	123913433	rs4930718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL2	rs4930718-G	NR	4E-9		0.0203262	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1530	chr12	123913432	123913433	rs4930718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q24.31		rs4930718-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1530	chr12	123916096	123916097	rs35416759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL2	rs35416759-G	NR	1E-13		0.0235366	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1530	chr12	123916096	123916097	rs35416759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	RILPL2	rs35416759-G	NR	4E-9		0.0203087	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1530	chr12	123916096	123916097	rs35416759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs35416759-G	NR	7E-9		0.0185591	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1530	chr12	123918075	123918076	rs28469812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28469812-G	NR	4E-10		0.0492032	[0.034-0.065] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123918075	123918076	rs28469812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28469812-G	NR	4E-10		0.0491945	[0.034-0.065] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123921263	123921264	rs28434767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL2	rs28434767-T	NR	5E-13		0.0226742	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1530	chr12	123921263	123921264	rs28434767	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	12q24.31	NR	rs28434767-G	0.308151	2E-8		0.042841803	[0.028-0.058] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1530	chr12	123926514	123926515	rs7299523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.31	Intergenic	rs7299523-A	0.0687	5E-9	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1530	chr12	123927261	123927262	rs11516173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RP11-972P1.8	rs11516173-T	NR	2E-11		0.0209585	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
1530	chr12	123927914	123927915	rs13303004	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs13303004-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1530	chr12	123960473	123960474	rs9777754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL1	rs9777754-A	NR	8E-12		0.0198946	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123960473	123960474	rs9777754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs9777754-A	NR	3E-12		0.0202672	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123989435	123989436	rs28722199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL1	rs28722199-G	NR	4E-8		0.0378238	[0.024-0.051] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123989435	123989436	rs28722199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs28722199-G	NR	5E-8		0.0377134	[0.024-0.051] unit increase	Affymetrix [319769] (imputed)	N
1530	chr12	123989590	123989590	rs71088920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs71088920-TA	NR	3E-10		0.0182663	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1530	chr12	123993838	123993839	rs28894691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs28894691-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1531	chr12	124006099	124006100	rs13303364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL1	rs13303364-G	NR	2E-8		0.0169001	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124006099	124006100	rs13303364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs13303364-G	NR	3E-9		0.0178435	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124013219	124013220	rs143928387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs143928387-T	NR	1E-11		0.0331835	[0.024-0.043] unit increase	Affymetrix [321114] (imputed)	N
1531	chr12	124013219	124013220	rs143928387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs143928387-T	NR	5E-12		0.0338364	[0.024-0.043] unit increase	Affymetrix [321169] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs117209788-C	0.909053	2E-11		0.0454812	[0.032-0.059] unit decrease	NR [11722792] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs117209788-C	0.909052	2E-8		0.0389926	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs117209788-C	0.909053	2E-9		0.0397876	[0.027-0.053] unit increase	NR [11722792] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs117209788-C	0.909052	6E-9		0.0390293	[0.026-0.052] unit decrease	NR [11722792] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RILPL1	rs117209788-T	NR	2E-18		0.0424346	[0.033-0.052] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RILPL1	rs117209788-T	NR	2E-18		0.0424697	[0.033-0.052] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124014250	124014251	rs117209788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs117209788-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1531	chr12	124019054	124019055	rs1533246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.31		rs1533246-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1531	chr12	124020684	124020685	rs137963709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MIR3908	rs137963709-A	NR	6E-17		0.0568369	[0.044-0.07] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124020684	124020685	rs137963709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs137963709-A	NR	7E-17		0.0566839	[0.043-0.07] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124020684	124020685	rs137963709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs137963709-A	NR	3E-10		0.0431565	[0.03-0.057] unit increase	Affymetrix [321114] (imputed)	N
1531	chr12	124020684	124020685	rs137963709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs137963709-A	NR	7E-12		0.0471757	[0.034-0.061] unit increase	Affymetrix [321169] (imputed)	N
1531	chr12	124022248	124022249	rs117198691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MIR3908	rs117198691-A	NR	2E-8		0.0407077	[0.027-0.055] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124022248	124022249	rs117198691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs117198691-A	NR	1E-8		0.0414702	[0.027-0.056] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	MIR3908	rs73216963-T	NR	2E-23		0.0496311	[0.04-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs73216963-T	NR	1E-24		0.051038	[0.041-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs73216963-T	NR	6E-18		0.0434248	[0.034-0.053] unit decrease	Affymetrix [321114] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	MIR3908	rs73216963-T	NR	6E-19		0.0447411	[0.035-0.055] unit decrease	Affymetrix [321169] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs73216963-?	NR	5E-18				Affymetrix [~ 8270000] (imputed)	N
1531	chr12	124034689	124034690	rs73216963	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs73216963-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1531	chr12	124043295	124043296	rs10846527	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs10846527-G	NR	3E-11		0.0288	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1531	chr12	124052383	124052384	rs117871720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs117871720-G	NR	2E-18		0.0715059	[0.056-0.087] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124052383	124052384	rs117871720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs117871720-G	NR	1E-18		0.0717642	[0.056-0.088] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124052383	124052384	rs117871720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs117871720-G	NR	3E-11		0.0545749	[0.038-0.071] unit increase	Affymetrix [321114] (imputed)	N
1531	chr12	124052383	124052384	rs117871720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs117871720-G	NR	9E-13		0.058974	[0.043-0.075] unit increase	Affymetrix [321169] (imputed)	N
1531	chr12	124068130	124068131	rs35958962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs35958962-G	NR	2E-19		0.0290976	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr12	124068130	124068131	rs35958962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs35958962-G	NR	4E-20		0.0297061	[0.023-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1531	chr12	124068130	124068131	rs35958962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs35958962-G	NR	2E-11		0.0218974	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1531	chr12	124068130	124068131	rs35958962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	RP11-486O12.2	rs35958962-G	NR	7E-13		0.0234677	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1531	chr12	124085501	124085502	rs786425	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	12q24.31	DDX55	rs786425-G	0.4	3E-6	(Single Height)	0.06	[0.038-0.082] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1531	chr12	124102893	124102894	rs79786297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs79786297-A	NR	3E-15		0.0386	[0.029-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1531	chr12	124102893	124102894	rs79786297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs79786297-A	NR	6E-14		0.0368	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1531	chr12	124113318	124113319	rs908373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	EIF2B1	rs908373-G	NR	5E-9		0.0166471	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124113318	124113319	rs908373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	EIF2B1	rs908373-G	NR	7E-10		0.0175331	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1531	chr12	124113318	124113319	rs908373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	EIF2B1	rs908373-G	NR	2E-8		0.0160715	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1531	chr12	124120350	124120351	rs141104697	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		12q24.31	GTF2H3	rs141104697-A	0.007	8E-6	(liability model)	0.46	[0.26-0.66] unit increase	NR [19725427] (imputed)	N
1531	chr12	124122407	124122408	rs11057312	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	12q24.31	GTF2H3	rs11057312-A	0.05	8E-6		2.18	[1.22-3.14] unit increase	Illumina [6380737] (imputed)	N
1532	chr12	124150012	124150013	rs7305701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs7305701-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1532	chr12	124157174	124157175	rs146326139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	12q24.31		rs146326139-C	NR	3E-10		0.0639	[0.044-0.084] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1532	chr12	124157174	124157175	rs146326139	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	12q24.31	TCTN2	rs146326139-G	0.986365	1E-16		0.0081729	[0.0062-0.0102] unit decrease	Affymetrix [13995440] (imputed)	N
1532	chr12	124157174	124157175	rs146326139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	12q24.31	NR	rs146326139-C	NR	2E-9		0.0635	[0.043-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1532	chr12	124184368	124184369	rs117614122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	TCTN2	rs117614122-T	NR	1E-8		0.0560824	[0.037-0.075] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124184368	124184369	rs117614122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	TCTN2	rs117614122-T	NR	7E-9		0.0572063	[0.038-0.077] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124184368	124184369	rs117614122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs117614122-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1532	chr12	124184368	124184369	rs117614122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs117614122-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1532	chr12	124186347	124186348	rs34705855	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs34705855-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1532	chr12	124201996	124201996	rs148118721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs148118721-T	NR	1E-17		0.0243088	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1532	chr12	124201996	124201996	rs148118721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs148118721-T	NR	9E-19		0.0251983	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1532	chr12	124201996	124201996	rs148118721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs148118721-T	NR	2E-15		0.0228111	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1532	chr12	124201996	124201996	rs148118721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs148118721-T	NR	2E-12		0.0202134	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs6488898-G	NR	2E-16		0.0441216	[0.034-0.055] unit increase	Affymetrix [319769] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs6488898-G	NR	2E-16		0.0441723	[0.034-0.055] unit increase	Affymetrix [319769] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs6488898-G	NR	2E-10		0.0342693	[0.024-0.045] unit increase	Affymetrix [321114] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs6488898-G	NR	3E-12		0.0378284	[0.027-0.048] unit increase	Affymetrix [321169] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs6488898-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1532	chr12	124203831	124203832	rs6488898	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	12q24.31	DNAH10, GPR109A, ATP6V0A2	rs6488898-G	NR	3E-10		0.053	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1532	chr12	124214893	124214894	rs7398606	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs7398606-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1532	chr12	124216481	124216482	rs116957652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	12q24.31	ATP6V0A2	rs116957652-A	0.034249	7E-9		0.035153005	[0.023-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1532	chr12	124222686	124222687	rs10846549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.31		rs10846549-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1532	chr12	124227960	124227961	rs112769474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs112769474-A	NR	1E-15		0.0477256	[0.036-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124227960	124227961	rs112769474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs112769474-A	NR	2E-16		0.0491097	[0.037-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124227960	124227961	rs112769474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs112769474-A	NR	9E-11		0.0389223	[0.027-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1532	chr12	124227960	124227961	rs112769474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs112769474-A	NR	1E-11		0.0406462	[0.029-0.052] unit decrease	Affymetrix [321169] (imputed)	N
1532	chr12	124242556	124242557	rs75279884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs75279884-G	NR	4E-9		0.0573299	[0.038-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124242556	124242557	rs75279884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ATP6V0A2	rs75279884-G	NR	4E-9		0.0571172	[0.038-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1532	chr12	124244935	124244936	rs117222175	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs117222175-T	NR	2E-11		0.0453	[0.032-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1532	chr12	124250582	124250583	rs6488904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.31	DNAH10	rs6488904-A	0.285791	2E-10		0.015722118	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1532	chr12	124254469	124254469	rs373397275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q24.31	DNAH10	rs373397275-GTTT	0.631207	3E-15		0.018833164	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr12	124265686	124265687	rs11057353	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.31	DNAH10	rs11057353-?	NR	4E-12		0.0181	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1533	chr12	124265686	124265687	rs11057353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057353-?	NR	7E-19				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124265686	124265687	rs11057353	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	12q24.31	DNAH10	rs11057353-C	0.644848250033216	1E-19		0.05329765	unit increase	Illumina [265780]	N
1533	chr12	124265686	124265687	rs11057353	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q24.31	DNAH10	rs11057353-T	0.3758	3E-22		0.0291	[0.023-0.035] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124265686	124265687	rs11057353	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q24.31	DNAH10	rs11057353-T	0.3801	2E-21		0.0297	[0.024-0.036] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124265686	124265687	rs11057353	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q24.31	DNAH10	rs11057353-T	0.3732	2E-16		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124265686	124265687	rs11057353	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q24.31	DNAH10	rs11057353-T	0.3795	7E-16		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124265686	124265687	rs11057353	30389748	Emdin CA	2018-11-02	Diabetes	DNA Sequence Variation in ACVR1C Encoding the Activin Receptor-Like Kinase 7 Influences Body Fat Distribution and Protects Against Type 2 Diabetes.	Waist-to-hip ratio adjusted for BMI	335,660 European ancestry individuals, 69,909 individuals	210,088 European ancestry individuals, 14,371 individuals	12q24.31	DNAH10	rs11057353-T	NR	3E-17		0.019	[0.015-0.023] unit increase	Illumina [614042]	N
1533	chr12	124267637	124267638	rs11057354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057354-A	NR	7E-29		0.0501763	[0.041-0.059] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124267637	124267638	rs11057354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057354-A	NR	7E-29		0.050199	[0.041-0.059] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124267637	124267638	rs11057354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057354-A	NR	2E-8		0.0262463	[0.017-0.035] unit decrease	Affymetrix [321788] (imputed)	N
1533	chr12	124267637	124267638	rs11057354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057354-A	NR	1E-19		0.041359	[0.032-0.05] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124267637	124267638	rs11057354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057354-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124267637	124267638	rs11057354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057354-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124274758	124274758	rs35056478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs35056478-C	NR	1E-25		0.0304688	[0.025-0.036] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124274758	124274758	rs35056478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs35056478-C	NR	7E-26		0.0306614	[0.025-0.036] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124278807	124278808	rs9888323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs9888323-C	NR	3E-34		0.034512	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124278807	124278808	rs9888323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs9888323-C	NR	2E-35		0.0351301	[0.03-0.041] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124280320	124280321	rs1114629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs1114629-C	NR	2E-9		0.017719	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1533	chr12	124286765	124286766	rs75873028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs75873028-A	NR	3E-29		0.0592507	[0.049-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124286765	124286766	rs75873028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs75873028-A	NR	4E-31		0.0611443	[0.051-0.071] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124286765	124286766	rs75873028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs75873028-A	NR	2E-20		0.0492318	[0.039-0.06] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124286765	124286766	rs75873028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs75873028-A	NR	4E-23		0.0528592	[0.042-0.063] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124289283	124289284	rs79641926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs79641926-T	NR	9E-11		0.0477994	[0.033-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124289283	124289284	rs79641926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs79641926-T	NR	3E-11		0.0492479	[0.035-0.064] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124300872	124300873	rs2674504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2674504-T	NR	9E-15		0.0231027	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124300872	124300873	rs2674504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2674504-T	NR	6E-16		0.0241201	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124306626	124306627	rs572075687	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	12q24.31	DNAH10	rs572075687-A	0.004	7E-6		1.432	[0.81-2.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1533	chr12	124306728	124306729	rs2674505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2674505-G	NR	2E-10		0.0187864	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1533	chr12	124307908	124307909	rs77440502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs77440502-T	NR	2E-9		0.0470474	[0.032-0.062] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124314250	124314251	rs4930733	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930733-T	NR	3E-8		0.0157891	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1533	chr12	124315342	124315343	rs7976816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7976816-A	NR	2E-19		0.0257516	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124315342	124315343	rs7976816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7976816-A	NR	3E-21		0.0270746	[0.021-0.033] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124316875	124316876	rs7978454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7978454-G	NR	4E-23		0.0283617	[0.023-0.034] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124316875	124316876	rs7978454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7978454-G	NR	3E-23		0.0284177	[0.023-0.034] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124316875	124316876	rs7978454	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q24.31	NR	rs7978454-G	0.409630410507569	7E-6	(IGP15)	0.1473	[0.083-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
1533	chr12	124317415	124317416	rs4930731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930731-G	NR	5E-37		0.0367074	[0.031-0.042] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124317415	124317416	rs4930731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930731-G	NR	2E-38		0.0374398	[0.032-0.043] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124317415	124317416	rs4930731	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs4930731-?	NR	2E-32				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124319863	124319864	rs4930730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930730-T	NR	2E-31		0.0328854	[0.027-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124319863	124319864	rs4930730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930730-T	NR	4E-32		0.0333018	[0.028-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124322727	124322727	rs137998108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs137998108-CA	NR	8E-29		0.0471664	[0.039-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124322727	124322727	rs137998108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs137998108-CA	NR	2E-30		0.0485441	[0.04-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124322727	124322727	rs137998108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs137998108-CA	NR	2E-20		0.0395474	[0.031-0.048] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124323771	124323772	rs2341780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2341780-G	NR	7E-16		0.0229335	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124323771	124323772	rs2341780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2341780-G	NR	2E-16		0.0234618	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124323771	124323772	rs2341780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2341780-G	NR	3E-12		0.0200428	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124323771	124323772	rs2341780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2341780-G	NR	1E-12		0.0204409	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124323771	124323772	rs2341780	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs2341780-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124324279	124324280	rs10846560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846560-A	NR	2E-19		0.0263461	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124324279	124324280	rs10846560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846560-A	NR	1E-20		0.0272185	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124330310	124330311	rs34934281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs34934281-T	NR	2E-23		0.0433112	[0.035-0.052] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124330310	124330311	rs34934281	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q24.31	DNAH10	rs34934281-C	0.8874	1E-20		0.0428	[0.034-0.052] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124330310	124330311	rs34934281	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q24.31	DNAH10	rs34934281-C	0.8802	2E-20		0.0433	[0.034-0.053] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124330310	124330311	rs34934281	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q24.31	DNAH10	rs34934281-C	0.8893	3E-14		0.0252	[0.019-0.032] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124330310	124330311	rs34934281	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q24.31	DNAH10	rs34934281-C	0.8815	7E-14		0.0257	[0.019-0.032] unit increase	Affymetrix, Illumina [at least 228985]	N
1533	chr12	124330439	124330440	rs4930728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930728-A	NR	2E-25		0.033308	[0.027-0.04] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124330439	124330440	rs4930728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930728-A	NR	1E-26		0.0340945	[0.028-0.04] unit increase	Affymetrix [319769] (imputed)	N
1533	chr12	124330439	124330440	rs4930728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930728-A	NR	1E-17		0.0275984	[0.021-0.034] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124330439	124330440	rs4930728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930728-A	NR	4E-8		0.0182319	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1533	chr12	124330439	124330440	rs4930728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs4930728-A	NR	7E-18		0.0278077	[0.021-0.034] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124332955	124332956	rs7977713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.31	NR	rs7977713-C	NR	5E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1533	chr12	124333518	124333519	rs7960854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7960854-C	NR	1E-16		0.0240869	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124333518	124333519	rs7960854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7960854-C	NR	2E-16		0.0238879	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
1533	chr12	124336477	124336478	rs7959043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7959043-G	NR	2E-22		0.0279811	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124336477	124336478	rs7959043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7959043-G	NR	5E-24		0.0290084	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124336477	124336478	rs7959043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7959043-G	NR	3E-21		0.0274053	[0.022-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124336477	124336478	rs7959043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs7959043-G	NR	5E-19		0.0259015	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124337091	124337092	rs7300162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs7300162-?	NR	8E-22				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124345164	124345165	rs7138100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs7138100-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124348064	124348065	rs11057376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057376-T	NR	2E-17		0.0442801	[0.034-0.054] unit increase	Affymetrix [321114] (imputed)	N
1533	chr12	124348786	124348787	rs141193534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs141193534-A	NR	1E-10		0.0671901	[0.047-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124348786	124348787	rs141193534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs141193534-A	NR	6E-11		0.0683355	[0.048-0.089] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124348786	124348787	rs141193534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs141193534-A	NR	2E-9		0.0633303	[0.043-0.084] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124372276	124372277	rs11057385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057385-A	NR	7E-14		0.0400624	[0.03-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124372276	124372277	rs11057385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057385-A	NR	5E-14		0.0403543	[0.03-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124372276	124372277	rs11057385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057385-A	NR	5E-10		0.0336732	[0.023-0.044] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124372276	124372277	rs11057385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs11057385-A	NR	6E-9		0.0314092	[0.021-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124375209	124375210	rs10773046	23989986	Evangelou E	2013-08-29	Ann Rheum Dis	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	12q24.31	DNAH10	rs10773046-G	0.45	2E-6		1.07	[1.03-1.11]	Illumina [2567279] (imputed)	N
1533	chr12	124378865	124378866	rs10773047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10773047-C	NR	4E-10		0.0176396	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124378865	124378866	rs10773047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10773047-C	NR	7E-11		0.0184632	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124378865	124378866	rs10773047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10773047-C	NR	1E-9		0.0174092	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124378865	124378866	rs10773047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10773047-C	NR	3E-8		0.0157861	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs76355371-G	NR	4E-38		0.0646459	[0.055-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs76355371-G	NR	7E-40		0.066211	[0.056-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs76355371-G	NR	9E-25		0.0519666	[0.042-0.062] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs76355371-G	NR	5E-10		0.0324222	[0.022-0.043] unit increase	Affymetrix [321788] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs76355371-G	NR	2E-28		0.0559183	[0.046-0.066] unit decrease	Affymetrix [321169] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.31	NR	rs76355371-G	NR	4E-12		0.0297	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs76355371-G	NR	2E-18		0.0394	[0.031-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1533	chr12	124380046	124380047	rs76355371	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs76355371-G	NR	8E-15		0.035	[0.026-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1533	chr12	124380504	124380505	rs144196238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs144196238-T	NR	8E-10		0.023479	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124380504	124380505	rs144196238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs144196238-T	NR	6E-10		0.0236646	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1533	chr12	124380504	124380505	rs144196238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs144196238-T	NR	3E-9		0.0229266	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1533	chr12	124382687	124382688	rs10846573	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs10846573-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124383500	124383501	rs74815407	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs74815407-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1533	chr12	124383812	124383813	rs11057390	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	DNAH10	rs11057390-T	0.704569	1E-18		0.0190602	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr12	124390680	124390681	rs2341569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs2341569-G	NR	4E-13		0.0224275	[0.016-0.028] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124393696	124393697	rs6488910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs6488910-T	NR	1E-49		0.044115	[0.038-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124393696	124393697	rs6488910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs6488910-T	NR	1E-51		0.0450781	[0.039-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124393696	124393697	rs6488910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs6488910-T	NR	8E-38		0.0386484	[0.033-0.045] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124393696	124393697	rs6488910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs6488910-T	NR	2E-36		0.0380172	[0.032-0.044] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124398843	124398843	rs113172657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs113172657-ACTG	NR	3E-16		0.0265354	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124398843	124398843	rs113172657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs113172657-ACTG	NR	9E-17		0.0270277	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124398843	124398843	rs113172657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs113172657-ACTG	NR	7E-14		0.0245275	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124398843	124398843	rs113172657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs113172657-ACTG	NR	2E-12		0.023061	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124399154	124399155	rs79478560	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	12q24.31	DNAH10	rs79478560-A	0.3686	4E-9		0.02201642	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1534	chr12	124399549	124399550	rs1316952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs1316952-C	NR	9E-34		0.0498107	[0.042-0.058] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124399549	124399550	rs1316952	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.31	DNAH10	rs1316952-T	0.87	9E-7	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1534	chr12	124399549	124399550	rs1316952	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.31	DNAH10	rs1316952-T	0.87	1E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1534	chr12	124399549	124399550	rs1316952	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.31	DNAH10	rs1316952-T	0.87	5E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1534	chr12	124400088	124400089	rs140249421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs140249421-G	NR	5E-9		0.0576455	[0.038-0.077] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124400088	124400089	rs140249421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs140249421-G	NR	3E-9		0.0583596	[0.039-0.078] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846577-C	NR	1E-30		0.032914	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846577-C	NR	2E-32		0.033939	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846577-C	NR	6E-24		0.0291682	[0.024-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846577-C	NR	4E-9		0.0174759	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10	rs10846577-C	NR	8E-23		0.0284761	[0.023-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124400260	124400261	rs10846577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs10846577-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1534	chr12	124401710	124401715	rs139928238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q24.31		rs139928238-C	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1534	chr12	124403768	124403769	rs11057393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11057393-T	0.300734	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	DNAH10	rs12317176-T	0.65	7E-11		0.024	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	DNAH10	rs12317176-T	0.65	2E-12		0.0302	[0.022-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	DNAH10	rs12317176-?	0.65	1E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	1E-9		0.0245	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	1E-16	(women)	0.042	[0.032-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	8E-18	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	4E-9		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	DNAH10	rs12317176-T	0.649	3E-17	(women)	0.0383	[0.029-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	DNAH10	rs12317176-T	0.6629	6E-9	(EA)	0.0205	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124404717	124404718	rs12317176	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	DNAH10	rs12317176-T	0.6629	1E-13	(EA,women)	0.0342	[0.025-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124405870	124405871	rs7301953	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	DNAH10	rs7301953-A	0.3122	4E-20		0.0185	[0.015-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1534	chr12	124405870	124405871	rs7301953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs7301953-A	0.280067	6E-20				Affymetrix, Illumina [24649327] (imputed)	N
1534	chr12	124405870	124405871	rs7301953	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.31	NR	rs7301953-?	NR	3E-6		0.0081547	[0.0048-0.0116] unit increase	Affymetrix [805426] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-19		0.0373878	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-16		0.0345554	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-15		0.0330492	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-11		0.0283806	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-13		0.0305617	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	4E-14		0.0322286	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-10		0.0276683	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-13		0.0316477	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	4E-13		0.0308394	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	8E-13		0.030478	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-12		0.0294825	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-13		0.0316639	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-13		0.0297221	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-14		0.0328966	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-8		0.0236755	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-15		0.0316799	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680197	3E-18		0.0358203	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680224	4E-13		0.0312156	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-13		0.031744	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-11		0.0275158	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-15		0.0338926	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-17		0.0332082	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-14		0.0305914	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	8E-19		0.0350429	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-11		0.02801	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-13		0.0317793	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	7E-14		0.0301615	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-15		0.0341432	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	4E-16		0.0315297	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-9		0.0255866	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-14		0.0325379	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-14		0.0311147	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-15		0.0333586	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-17		0.0327201	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-9		0.0253396	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-10		0.0262333	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-9		0.0243546	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	8E-14		0.0319217	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-18		0.0353663	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	8E-19		0.0346657	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	1E-11		0.0291205	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	6E-20		0.036342	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	5E-16		0.0341684	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-14		0.0327951	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-17		0.0344532	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-18		0.0340242	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	8E-11		0.0277461	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	3E-15		0.0309312	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs7133378-G	0.680211	2E-13		0.0298318	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	12q24.31	DNAH10	rs7133378-A	0.3165	6E-11		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	NR	3E-24		0.0319732	[0.026-0.038] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	NR	1E-14		0.0233325	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	12q24.31		rs7133378-A	0.32	2E-42		0.029	mmol/L decrease	NR [NR] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	12q24.31		rs7133378-A	0.32	5E-14		0.015	nmol/L increase	NR [NR] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	12q24.31		rs7133378-A	0.32	3E-89				NR [NR] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	12q24.31		rs7133378-A	0.32	2E-78		0.037	mmol/L increase	NR [NR] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	12q24.31		rs7133378-A	0.32	4E-33		0.019	% increase	NR [NR] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	CCDC92-DNAH10	rs7133378-A	0.3499	3E-12				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	CCDC92-DNAH10	rs7133378-A	0.3499	6E-15				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	12q24.31	CCDC92-DNAH10	rs7133378-A	0.3499	9E-17				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	12q24.31	CCDC92-DNAH10	rs7133378-A	0.3499	4E-9				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	12q24.31	CCDC92-DNAH10	rs7133378-A	0.3499	1E-20				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	0.318184	2E-16		0.020372694	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	0.318186	2E-19		0.02230662	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	0.318227	2E-20		0.022212032	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	12q24.31	DNAH10, CCDC92	rs7133378-A	0.318232	1E-23		0.024148658	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	12q24.31	CCDC92	rs7133378-?	NR	6E-10				NR [5554549] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs7133378-?	NR	7E-87				NR [~ 8900000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.31		rs7133378-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs7133378-?	NR	8E-14		0.16994	[0.13-0.21] unit increase	Affymetrix [7794483] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs7133378-?	NR	6E-8	(female)	0.20128	[0.13-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs7133378-?	NR	4E-7	(male)	0.14079	[0.086-0.195] unit increase	Affymetrix [7794483] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q24.31	NR	rs7133378-G	0.67	2E-95		0.039	[0.035-0.043] unit increase	Affymetrix [2446094] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q24.31	NR	rs7133378-G	0.67	5E-8				Affymetrix [2446094] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.31	NA	rs7133378-A	0.3335	3E-13		0.0127	[0.0094-0.016] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	12q24.31	NA	rs7133378-A	0.3335	3E-13		0.0127	[0.0094-0.016] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	12q24.31	NR	rs7133378-G	NR	2E-7		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92, DNAH10	rs7133378-G	0.6832	8E-21	(women)	0.0485	[0.038-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92, DNAH10	rs7133378-G	0.6832	1E-19		0.0367	[0.029-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs7133378-G	0.6832	8E-17	(EA)	0.0354	[0.027-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92, DNAH10	rs7133378-G	0.6832	6E-19	(women)	0.0556	[0.043-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92	rs7133378-G	0.6832	4E-18		0.042	[0.033-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92, DNAH10	rs7133378-?	0.6832	4E-18				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92, DNAH10	rs7133378-?	0.6832	3E-18	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs7133378-?	0.6832	4E-18	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	12q24.31	CCDC92, DNAH10	rs7133378-A	0.3168	6E-9		0.02252936	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1534	chr12	124409501	124409502	rs7133378	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q24.31	NR	rs7133378-A	0.31614887027496	1E-14		0.027374689	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124410528	124410529	rs4575361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	12q24.31		rs4575361-T	NR	4E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1534	chr12	124410528	124410529	rs4575361	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	12q24.31	CCDC92	rs4575361-A	0.689	1E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1534	chr12	124410911	124410912	rs76109155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs76109155-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124410911	124410912	rs76109155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs76109155-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124412927	124412928	rs139192229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs139192229-A	NR	1E-9		0.0676402	[0.046-0.089] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124412927	124412928	rs139192229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs139192229-A	NR	1E-9		0.0679533	[0.046-0.09] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124412927	124412928	rs139192229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs139192229-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124414097	124414098	rs3802999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs3802999-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124415452	124415453	rs10846580	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	12q24.31		rs10846580-?	NR	1E-8		0.0209	NR unit increase	NR [4502103] (imputed)	N
1534	chr12	124415452	124415453	rs10846580	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	12q24.31	NR	rs10846580-C	0.339227	1E-9		0.0620972	[0.042-0.082] unit decrease	Affymetrix [21375087] (imputed)	N
1534	chr12	124415452	124415453	rs10846580	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	12q24.31	CCDC92	rs10846580-?	NR	8E-12				NR [5554549] (imputed)	N
1534	chr12	124415452	124415453	rs10846580	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	12q24.31	CCDC92	rs10846580-?	NR	9E-17				NR [5554549] (imputed)	N
1534	chr12	124416053	124416054	rs61953572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs61953572-C	NR	3E-11		0.0288449	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124416053	124416054	rs61953572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs61953572-C	NR	5E-12		0.0300465	[0.022-0.039] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124416053	124416054	rs61953572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs61953572-C	NR	7E-11		0.0286404	[0.02-0.037] unit increase	Affymetrix [321114] (imputed)	N
1534	chr12	124416053	124416054	rs61953572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	DNAH10, CCDC92, DNAH10OS	rs61953572-C	NR	6E-10		0.0273002	[0.019-0.036] unit increase	Affymetrix [321169] (imputed)	N
1534	chr12	124418673	124418674	rs12298484	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.31	DNAH10	rs12298484-C	0.67	2E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1534	chr12	124419061	124419062	rs11057396	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12q24.31	CCDC92, ZNF664, DNAH10, RILPL2, SNRNP35, RILPL1, MIR3908, TMED2, DDX55, EIF2B1, GTF2H3, TCTN2, ATP6V0A2, ZNF664-FAM101A, FAM101A, NCOR2	rs11057396-A	0.67	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124419061	124419062	rs11057396	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	12q24.31	CCDC92, ZNF664, DNAH10, RILPL2, SNRNP35, RILPL1, MIR3908, TMED2, DDX55, EIF2B1, GTF2H3, TCTN2, ATP6V0A2, ZNF664-FAM101A, FAM101A, NCOR2	rs11057396-A	0.670320581124601	4E-7	(women)	0.0358	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124419061	124419062	rs11057396	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	12q24.31	CCDC92, ZNF664, DNAH10, RILPL2, SNRNP35, RILPL1, MIR3908, TMED2, DDX55, EIF2B1, GTF2H3, TCTN2, ATP6V0A2, ZNF664-FAM101A, FAM101A, NCOR2	rs11057396-A	0.67032	6E-8		0.0358	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	4E-10		0.0271816	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	4E-8		0.0234938	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	6E-14		0.0322725	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	3E-11		0.0287179	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	5E-15		0.0335987	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	3E-11		0.0290103	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	2E-9		0.0262772	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	4E-12		0.0298508	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	1E-8		0.0249561	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	3E-8		0.0241507	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	2E-11		0.0290445	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	2E-14		0.0329603	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	8E-9		0.0251733	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	4E-10		0.0271521	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	1E-8		0.0250021	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	9E-12		0.0294839	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	2E-14		0.0327627	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	2E-12		0.030571	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	8E-14		0.0321798	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	9E-9		0.0251136	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	4E-11		0.0288043	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057397-C	0.662498	9E-15		0.0330193	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q24.31	DNAH10	rs11057397-C	0.662899	1E-16		0.0182734	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	DNAH10	rs11057397-C	0.6614	9E-9	(EA)	0.0224	[0.015-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124419727	124419728	rs11057397	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	DNAH10	rs11057397-C	0.6614	2E-13	(EA, women)	0.0374	[0.027-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124421452	124421453	rs9863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	12q24.31	CCDC92	rs9863-C	0.327038	4E-14		0.017981159	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124421452	124421453	rs9863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.31	CCDC92	rs9863-C	0.327079	4E-12		0.016386375	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124421452	124421453	rs9863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q24.31	CCDC92	rs9863-C	0.327135	5E-12		0.016641067	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124421452	124421453	rs9863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	12q24.31	NR	rs9863-C	0.329292	2E-21		0.018749	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1534	chr12	124421452	124421453	rs9863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.31	NR	rs9863-C	0.329003	2E-15		0.01573	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1534	chr12	124421452	124421453	rs9863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	12q24.31		rs9863-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1534	chr12	124421452	124421453	rs9863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.31		rs9863-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1534	chr12	124421452	124421453	rs9863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	12q24.31	CCDC92	rs9863-C	0.3268	3E-9		0.02281002	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1534	chr12	124422261	124422262	rs35794481	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCDC92	rs35794481-?	NR	2E-9		0.965434	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr12	124422261	124422262	rs35794481	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCDC92	rs35794481-?	NR	2E-10	(male)	2.72744	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr12	124423816	124423817	rs4930724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.31	NR	rs4930724-C	0.332278	1E-10		0.012421	[0.0086-0.0162] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1534	chr12	124423816	124423817	rs4930724	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q24.31	CCDC92	rs4930724-T	0.668385	4E-35		0.0261639	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC92	rs7973103-T	NR	1E-24		0.0365647	[0.03-0.044] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs7973103-T	NR	8E-26		0.0375686	[0.031-0.045] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs7973103-T	NR	1E-17		0.0308656	[0.024-0.038] unit increase	Affymetrix [321114] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs7973103-T	NR	6E-18		0.0312083	[0.024-0.038] unit increase	Affymetrix [321169] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs7973103-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124424635	124424636	rs7973103	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs7973103-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124427305	124427306	rs11057401	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	12q24.31	CCDC92	rs11057401-T	0.689	1E-41		0.0433	[0.037-0.05] unit increase	Affymetrix, Illumina [at least 228985]	N
1534	chr12	124427305	124427306	rs11057401	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	12q24.31	CCDC92	rs11057401-T	0.6843	7E-51		0.0453	[0.039-0.052] unit increase	Affymetrix, Illumina [at least 228985]	N
1534	chr12	124427305	124427306	rs11057401	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	12q24.31	CCDC92	rs11057401-T	0.6946	7E-37		0.0287	[0.024-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1534	chr12	124427305	124427306	rs11057401	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	12q24.31	CCDC92	rs11057401-T	0.6855	6E-38		0.0306	[0.026-0.035] unit increase	Affymetrix, Illumina [at least 228985]	N
1534	chr12	124427305	124427306	rs11057401	30389748	Emdin CA	2018-11-02	Diabetes	DNA Sequence Variation in ACVR1C Encoding the Activin Receptor-Like Kinase 7 Influences Body Fat Distribution and Protects Against Type 2 Diabetes.	Waist-to-hip ratio adjusted for BMI	335,660 European ancestry individuals, 69,909 individuals	210,088 European ancestry individuals, 14,371 individuals	12q24.31	CCDC92	rs11057401-T	NR	2E-50		0.036	[0.032-0.04] unit decrease	Illumina [614042]	N
1534	chr12	124427305	124427306	rs11057401	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q24.31	CCDC92, DNAH10	rs11057401-A	0.3133	2E-8		0.0383	[0.025-0.052] unit decrease	NR [8041861] (imputed)	N
1534	chr12	124427305	124427306	rs11057401	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	12q24.31	CCDC92	rs11057401-T	0.69	4E-9		1.06	[1.04-1.08]	Affymetrix [9061845] (imputed)	N
1534	chr12	124427886	124427887	rs111854458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs111854458-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124428330	124428331	rs4930726	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.31	NR	rs4930726-C	0.334	8E-18		0.0353	[0.027-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1534	chr12	124438004	124438005	rs3867146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	CCDC92	rs3867146-A	NR	4E-8		0.026373	[0.017-0.036] unit decrease	Affymetrix [323123] (imputed)	N
1534	chr12	124438972	124438973	rs7132655	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs7132655-G	0.664593	6E-12		0.026552	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs4765219-C	0.6655	5E-18	(EA, women)	0.0456	[0.035-0.056] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92	rs4765219-C	0.6655	3E-18	(EA)	0.0411	[0.032-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92	rs4765219-C	0.6652	8E-11	(EA)	0.0292	[0.02-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92	rs4765219-C	0.6647000000000001	4E-17	(EA,women)	0.0482	[0.037-0.059] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs4765219-?	0.6652	7E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs4765219-?	0.6652	2E-16	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	3E-8	(women)	0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	1E-7		0.0154	[0.0097-0.0211] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	1E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	4E-17	(women)	0.0398	[0.031-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	CCDC92	rs4765219-A	0.3303	1E-13		0.0274	[0.02-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CCDC92	rs4765219-C	0.6701	2E-16		0.0286	[0.022-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CCDC92	rs4765219-C	0.668	2E-15	(EA)	0.0284	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CCDC92	rs4765219-C	0.6677	4E-15	(women)	0.0364	[0.027-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124440109	124440110	rs4765219	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	CCDC92	rs4765219-C	0.6665	1E-14	(EA, women)	0.0366	[0.027-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124443563	124443564	rs111976018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs111976018-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124443563	124443564	rs111976018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs111976018-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124444408	124444409	rs10773048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC92	rs10773048-C	NR	6E-30		0.0319577	[0.026-0.037] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124444408	124444409	rs10773048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs10773048-C	NR	9E-31		0.0324279	[0.027-0.038] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124444408	124444409	rs10773048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs10773048-C	NR	2E-21		0.0270219	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1534	chr12	124444408	124444409	rs10773048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs10773048-C	NR	4E-23		0.0281222	[0.023-0.034] unit increase	Affymetrix [321169] (imputed)	N
1534	chr12	124444652	124444653	rs117633377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC92	rs117633377-C	NR	3E-9		0.0536484	[0.036-0.071] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124444652	124444653	rs117633377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC92	rs117633377-C	NR	4E-9		0.053481	[0.036-0.071] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124447338	124447339	rs3789967	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	12q24.31	CCDC92	rs3789967-T	0.66	6E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1534	chr12	124447396	124447397	rs80270210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.31		rs80270210-T	NR	1E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1534	chr12	124449222	124449223	rs7973683	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	12q24.31	CCDC92	rs7973683-C	0.6639999999999999	1E-19	(EA, women)	0.0548	[0.043-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124449222	124449223	rs7973683	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	12q24.31	CCDC92	rs7973683-?	0.6646000000000001	3E-19	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1534	chr12	124456440	124456440	rs750715588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC92, ZNF664	rs750715588-A	NR	2E-16		0.0369366	[0.028-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124457222	124457223	rs192451380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	CCDC92, ZNF664	rs192451380-T	NR	4E-9		0.0332651	[0.022-0.044] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124457222	124457223	rs192451380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	CCDC92, ZNF664	rs192451380-T	NR	4E-9		0.0333051	[0.022-0.044] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124458001	124458002	rs12823740	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.31	NR	rs12823740-C	0.6614	1E-17		0.041	[0.032-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	12q24.31		rs4765127-G	0.665026	4E-8		0.0235654	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	12q24.31		rs4765127-G	0.665026	5E-9		0.0249978	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.31		rs4765127-T	0.3342	5E-14	(EA)	0.0099	[0.0074-0.0124] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4765127-G	NR	1E-18		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4765127-G	0.656	1E-17	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4765127-G	NR	5E-21		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs4765127-G	0.656	2E-20	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	ZNF664	rs4765127-T	0.35	2E-8		0.029	[NR] mg/dL decrease	NR [NR] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	ZNF664	rs4765127-T	0.35	8E-10		0.032	[NR] unit increase	NR [NR] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	12q24.31	CCDC92, ZNF664	rs4765127-G	0.34	1E-8		2.42	[1.62-3.22] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1534	chr12	124460166	124460167	rs4765127	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	CCDC92, ZNF664	rs4765127-T	0.34	3E-10		0.44	[0.28-0.6] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1534	chr12	124462253	124462254	rs4765528	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg lean mass (fat adjusted)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	12q24.31	ZNF664	rs4765528-T	NR	2E-7		0.011	NR unit increase	Affymetrix, Illumina [6879267] (imputed)	N
1534	chr12	124462253	124462254	rs4765528	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass and leg lean mass (pleiotropy)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	12q24.31	ZNF664	rs4765528-T	NR	2E-11				Affymetrix, Illumina [6879267] (imputed)	N
1534	chr12	124462253	124462254	rs4765528	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass (lean adjusted)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	12q24.31	ZNF664	rs4765528-T	NR	6E-16		0.017	NR unit decrease	Affymetrix, Illumina [6879267] (imputed)	N
1534	chr12	124463277	124463278	rs35981630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs35981630-A	NR	6E-17		0.0373037	[0.029-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124463277	124463278	rs35981630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs35981630-A	NR	1E-12		0.0318516	[0.023-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124463277	124463278	rs35981630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs35981630-A	NR	3E-11		0.0299096	[0.021-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124464675	124464676	rs74816775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs74816775-G	NR	5E-45		0.0622741	[0.054-0.071] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124464675	124464676	rs74816775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs74816775-G	NR	6E-47		0.0636854	[0.055-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124464675	124464676	rs74816775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs74816775-G	NR	2E-31		0.0521959	[0.043-0.061] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124464675	124464676	rs74816775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs74816775-G	NR	2E-11		0.0310143	[0.022-0.04] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124464835	124464836	rs11057408	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	12q24.31	ZNF664	rs11057408-T	0.363	2E-11	(Trans-ethnic initial)	0.0258	[0.019-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1534	chr12	124465994	124465995	rs4765541	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	12q24.31	NR	rs4765541-?		5E-9		0.0137597	[0.0091-0.0184] unit increase	Affymetrix [19400418] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	12q24.31		rs7978610-G	0.665326	5E-10		0.0265303	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs7978610-C	NR	4E-101		0.0638034	[0.058-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs7978610-C	NR	5E-70		0.0533585	[0.047-0.059] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs7978610-C	NR	7E-73		0.054544	[0.049-0.06] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs7978610-?	NR	2E-93				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs7978610-?	NR	5E-60				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124468571	124468572	rs7978610	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	12q24.31	ZNF664	rs7978610-G	0.6655	2E-8		1.27	[1.17-1.38]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1534	chr12	124469737	124469738	rs952632	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q24.31	NR	rs952632-A	0.6579	5E-97		0.0397	[0.036-0.043] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124470523	124470523	rs150670203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs150670203-GT	NR	3E-15		0.0606136	[0.046-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124470523	124470523	rs150670203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs150670203-GT	NR	9E-16		0.061893	[0.047-0.077] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124470523	124470523	rs150670203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs150670203-GT	NR	4E-14		0.0586853	[0.043-0.074] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124470523	124470523	rs150670203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs150670203-GT	NR	5E-11		0.0511106	[0.036-0.066] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124474432	124474432	rs11274389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11274389-T	0.680398	3E-12		0.0308377	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1534	chr12	124475155	124475156	rs7307277	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7307277-A	NR	2E-19		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124475155	124475156	rs7307277	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7307277-A	0.655	4E-18	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124475155	124475156	rs7307277	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7307277-A	NR	1E-21		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124475155	124475156	rs7307277	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7307277-A	0.655	8E-21	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124476560	124476561	rs71458830	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs71458830-C	0.665266	2E-15		0.0303496	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124478339	124478340	rs117390648	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs117390648-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124478585	124478586	rs825510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.31	NR	rs825510-C	NR	2E-12		0.0266	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1534	chr12	124478585	124478586	rs825510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs825510-C	NR	6E-16		0.0318	[0.024-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1534	chr12	124478585	124478586	rs825510	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.31	NR	rs825510-C	NR	1E-9		0.0231	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1534	chr12	124479160	124479161	rs4765568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs4765568-C	NR	2E-25		0.038241	[0.031-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124479160	124479161	rs4765568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs4765568-C	NR	3E-26		0.0388686	[0.032-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124479160	124479161	rs4765568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs4765568-C	NR	1E-20		0.0344103	[0.027-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124479160	124479161	rs4765568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs4765568-C	NR	1E-20		0.0344694	[0.027-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124480800	124480801	rs34102591	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.31	ZNF664-FAM1	rs34102591-G	NR	5E-7	(EA)	1.0718113	[1.04-1.1]	Illumina [6627481] (imputed)	N
1534	chr12	124480800	124480801	rs34102591	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	12q24.31	ZNF664-FAM1	rs34102591-G	NR	1E-6		1.0626993	[1.04-1.09]	Illumina [6627481] (imputed)	N
1534	chr12	124480800	124480801	rs34102591	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	12q24.31	intergenic	rs34102591-G	NR	5E-8		1.0706638	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1534	chr12	124480800	124480801	rs34102591	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.31	NR	rs34102591-G	NR	3E-7		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1534	chr12	124481251	124481252	rs34714686	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs34714686-G	NR	3E-10		0.0429	[0.03-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1534	chr12	124481251	124481252	rs34714686	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs34714686-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124481251	124481252	rs34714686	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs34714686-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124484344	124484345	rs79533202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs79533202-C	NR	9E-10		0.054694	[0.037-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124484344	124484345	rs79533202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs79533202-C	NR	8E-10		0.0550573	[0.038-0.073] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124484344	124484345	rs79533202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs79533202-C	NR	2E-9		0.0542329	[0.037-0.072] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124484344	124484345	rs79533202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs79533202-C	NR	3E-9		0.0534416	[0.036-0.071] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124486677	124486678	rs12310367	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	12q24.31		rs12310367-A	0.6617	7E-9		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1534	chr12	124486850	124486851	rs12311848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.31	NR	rs12311848-G	0.33383700000000005	1E-33		0.0100424	[0.0083-0.0118] unit increase	Affymetrix [16582909] (imputed)	N
1534	chr12	124486850	124486851	rs12311848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	12q24.31	NR	rs12311848-G	0.33256600000000003	2E-29		0.014099	[0.012-0.017] unit increase	Affymetrix [16585854] (imputed)	N
1534	chr12	124486850	124486851	rs12311848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.31	NR	rs12311848-G	0.33383700000000005	1E-18		0.00805313	[0.0061-0.01] unit increase	Affymetrix [16582965] (imputed)	N
1534	chr12	124486850	124486851	rs12311848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	12q24.31	NR	rs12311848-G	0.33256600000000003	2E-14		0.0109313	[0.008-0.0139] unit increase	Affymetrix [16585866] (imputed)	N
1534	chr12	124489161	124489162	rs11057413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs11057413-G	NR	2E-97		0.0626109	[0.057-0.068] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124489161	124489162	rs11057413	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	12q24.31	ZNF664, FAM101A	rs11057413-?	NR	1E-10				NR [5554549] (imputed)	N
1534	chr12	124489161	124489162	rs11057413	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	12q24.31	ZNF664-FAM101A	rs11057413-?	NR	6E-9				NR [5554549] (imputed)	N
1534	chr12	124491528	124491529	rs1187415	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	12q24.31	RFLNA	rs1187415-?	NR	5E-9		0.01022	[0.0062-0.0142] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1534	chr12	124491528	124491529	rs1187415	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs1187415-?	NR	2E-16		0.006853	[0.0049-0.0088] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1534	chr12	124491528	124491529	rs1187415	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	12q24.31	ZNF664	rs1187415-C	0.920	2E-7		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1534	chr12	124492313	124492313	rs112702205	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q24.31	NR	rs112702205-ATTTTATTCATCCAT	0.331125	2E-9		0.0444652	[0.03-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
1534	chr12	124492714	124492715	rs57818143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs57818143-G	NR	4E-15		0.0418626	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124492714	124492715	rs57818143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs57818143-G	NR	2E-15		0.0422236	[0.032-0.053] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124492714	124492715	rs57818143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs57818143-G	NR	5E-9		0.0314422	[0.021-0.042] unit increase	Affymetrix [321169] (imputed)	N
1534	chr12	124494539	124494540	rs7307053	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.31	ZNF664	rs7307053-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1534	chr12	124496315	124496316	rs1054852	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	ZNF664	rs1054852-A	0.623065	8E-65		0.0351193	[0.031-0.039] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr12	124499541	124499542	rs1048497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs1048497-A	NR	3E-31		0.0452435	[0.038-0.053] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124499541	124499542	rs1048497	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.31	ZNF664	rs1048497-G	0.83	7E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1534	chr12	124499541	124499542	rs1048497	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	12q24.31	ZNF664	rs1048497-G	0.83	9E-6	(Overall)			Affymetrix, Illumina [2500000] (imputed)	N
1534	chr12	124499881	124499882	rs3767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs3767-T	NR	3E-9		0.0392887	[0.026-0.052] unit decrease	Affymetrix [321788] (imputed)	N
1534	chr12	124499881	124499882	rs3767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	ZNF664, FAM101A	rs3767-T	NR	6E-9		0.0369385	[0.024-0.049] unit decrease	Affymetrix [321016] (imputed)	N
1534	chr12	124500722	124500722	rs752843328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs752843328-G	NR	3E-66		0.0592484	[0.052-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124500722	124500722	rs752843328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs752843328-G	NR	5E-69		0.0605343	[0.054-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124500722	124500722	rs752843328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs752843328-G	NR	1E-13		0.0266158	[0.02-0.034] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124500722	124500722	rs752843328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs752843328-G	NR	2E-9		0.0205904	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
1534	chr12	124500724	124500725	rs556992087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	12q24.31		rs556992087-C	NR	4E-8		0.0695	[0.045-0.094] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1534	chr12	124500724	124500725	rs556992087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs556992087-C	NR	4E-46		0.049544	[0.043-0.056] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124500724	124500725	rs556992087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs556992087-C	NR	4E-52		0.0528519	[0.046-0.06] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124500724	124500725	rs556992087	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.31	FAM101A	rs556992087-T	0.777099	2E-10		0.0106085	[0.0073-0.0139] unit decrease	Affymetrix [12370749]	N
1534	chr12	124501207	124501208	rs74543960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.31		rs74543960-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1534	chr12	124503803	124503805	rs34248373	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	intergenic	rs34248373-?	0.5179	7E-11		0.0178	[0.013-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1534	chr12	124504282	124504283	rs825508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825508-T	NR	8E-21		0.0295786	[0.023-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124504282	124504283	rs825508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825508-T	NR	9E-21		0.0295655	[0.023-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124504282	124504283	rs825508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825508-T	NR	5E-12		0.0220116	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124504282	124504283	rs825508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825508-T	NR	2E-14		0.024588	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124505443	124505444	rs863750	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs863750-C	0.393256	3E-14		0.0310287	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124505443	124505444	rs863750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	12q24.31		rs863750-T	NR	1E-31		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1534	chr12	124505443	124505444	rs863750	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	FAM101A	rs863750-C	0.4404	6E-10				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124505443	124505444	rs863750	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	FAM101A	rs863750-C	0.4404	2E-8				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124505443	124505444	rs863750	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	12q24.31	FAM101A	rs863750-C	0.4404	5E-16				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124505443	124505444	rs863750	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	12q24.31	FAM101A	rs863750-C	0.4404	2E-16				Affymetrix, Illumina [2331072] (imputed)	N
1534	chr12	124505443	124505444	rs863750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.31	FAM101A	rs863750-T	0.60471	5E-13		0.01663742	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124505443	124505444	rs863750	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q24.31	FAM101A	rs863750-C	0.395533	2E-45		0.028859	[0.025-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1534	chr12	124505443	124505444	rs863750	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	12q24.31	ZNF664-FAM101A	rs863750-?	NR	7E-31		0.031	[0.026-0.036] unit decrease	Affymetrix [5701386] (imputed)	N
1534	chr12	124505443	124505444	rs863750	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	12q24.31	NR	rs863750-?	NR	2E-7		0.577722	[0.36-0.8] unit decrease	Illumina [31978362] (imputed)	N
1534	chr12	124505443	124505444	rs863750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs863750-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	12q24.31	NR	rs863750-T	0.5842	4E-101		0.0373	[0.034-0.041] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	12q24.31	NA	rs863750-T	0.5836	6E-51		0.0259	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	12q24.31	NR	rs863750-T	0.5836	6E-51		0.0259	[0.023-0.029] unit increase	NR [~ 27400000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs863750-C	NR	4E-13		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124505443	124505444	rs863750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs863750-C	0.403	2E-12	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124505443	124505444	rs863750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs863750-C	NR	4E-19		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124505443	124505444	rs863750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs863750-C	0.403	3E-19	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1534	chr12	124505443	124505444	rs863750	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	ZNF664	rs863750-T	0.5861	3E-9	(women)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	12q24.31	ZNF664	rs863750-T	0.5861	3E-8		0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.5938	7E-15	(EA, women)	0.0353	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.5932	7E-14	(EA)	0.0258	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.587	6E-14	(women)	0.0333	[0.025-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.5868	2E-13		0.0245	[0.018-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.5932	2E-6	(EA)	0.0163	[0.0096-0.023] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124505443	124505444	rs863750	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	ZNF664	rs863750-T	0.5932	1E-9	(EA, women)	0.0274	[0.019-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606914	2E-14		0.0305583	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	3E-8		0.0221961	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	2E-13		0.0279843	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606876	3E-8		0.022457	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606914	4E-11		0.0257151	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	6E-13		0.0289456	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	6E-10		0.0252436	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	2E-13		0.0279379	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	5E-10		0.0251723	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606914	1E-12		0.0266356	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	3E-11		0.0267773	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	6E-11		0.0257843	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	5E-12		0.0263556	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	1E-10		0.0255381	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	5E-14		0.0303092	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	5E-15		0.0297132	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	2E-9		0.0240057	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	1E-14		0.0306855	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	2E-14		0.0291397	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs10773049-T	0.606905	6E-12		0.0271361	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773049-C	NR	1E-87		0.057206	[0.052-0.063] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773049-C	NR	3E-11		0.0212125	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773049-C	NR	4E-89		0.0577054	[0.052-0.063] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773049-C	NR	2E-11		0.0214162	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773049-C	NR	3E-55		0.0455385	[0.04-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773049-C	NR	1E-11		0.0213445	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773049-C	NR	1E-62		0.0486751	[0.043-0.054] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	12q24.31	FAM101A	rs10773049-C	0.395058	5E-9		0.013826124	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	12q24.31	FAM101A	rs10773049-C	0.395047	5E-11		0.015496647	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs10773049-?	NR	3E-93				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs10773049-?	NR	3E-41				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	12q24.31	NR	rs10773049-T	0.600101243742376	7E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1534	chr12	124506630	124506631	rs10773049	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.31	ZNF664-FAM101A	rs10773049-C	0.405	3E-6		0.014	[0.008-0.0198] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1534	chr12	124506630	124506631	rs10773049	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.31	ZNF664-FAM101A	rs10773049-C	0.4	6E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1534	chr12	124508757	124508758	rs825453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs825453-T	0.574552	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
1534	chr12	124508757	124508758	rs825453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	12q24.31	NR	rs825453-T	0.607061	1E-12		0.014627	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1534	chr12	124508757	124508758	rs825453	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.31	ZNF664-FAM101A	rs825453-A	0.391167	9E-16		0.0152876	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	1E-58		0.0575441	[0.051-0.065] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	4E-59		0.0578528	[0.051-0.065] unit increase	Affymetrix [319769] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	2E-35		0.0447821	[0.038-0.052] unit increase	Affymetrix [321114] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	7E-17		0.0309317	[0.024-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	9E-14		0.026559	[0.02-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs11057418-C	NR	3E-8		0.0215344	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057418-C	NR	2E-39		0.0474365	[0.04-0.055] unit increase	Affymetrix [321169] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057418-?	NR	1E-58				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124508975	124508976	rs11057418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057418-?	NR	4E-27				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124509176	124509177	rs825452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825452-G	NR	3E-21		0.0284368	[0.023-0.034] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124509176	124509177	rs825452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs825452-G	NR	6E-14		0.0246652	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
1534	chr12	124509176	124509177	rs825452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs825452-G	NR	9E-17		0.0239756	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
1534	chr12	124509176	124509177	rs825452	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.31	NR	rs825452-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1534	chr12	124509176	124509177	rs825452	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	12q24.31	ZNF664	rs825452-A	0.6031	2E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	6E-70		0.0602251	[0.054-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773051-T	NR	2E-9		0.0225628	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	4E-71		0.0607753	[0.054-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773051-T	NR	3E-9		0.0224197	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	4E-45		0.04848	[0.042-0.055] unit decrease	Affymetrix [321114] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	5E-17		0.0296946	[0.023-0.037] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773051-T	NR	2E-12		0.0272066	[0.02-0.035] unit increase	Affymetrix [323858] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	2E-13		0.0249772	[0.018-0.032] unit increase	Affymetrix [321016] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10773051-T	NR	2E-11		0.024869	[0.018-0.032] unit increase	Affymetrix [323123] (imputed)	N
1534	chr12	124510390	124510391	rs10773051	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773051-T	NR	1E-50		0.051548	[0.045-0.058] unit decrease	Affymetrix [321169] (imputed)	N
1534	chr12	124510405	124510406	rs10773052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773052-G	NR	2E-10		0.0296942	[0.021-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124510405	124510406	rs10773052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10773052-G	NR	2E-10		0.0296317	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124511907	124511908	rs7296124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs7296124-C	NR	2E-66		0.0749826	[0.066-0.084] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124513776	124513777	rs34680764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34680764-G	NR	1E-64		0.0736655	[0.065-0.082] unit decrease	Affymetrix [319769] (imputed)	N
1534	chr12	124513776	124513777	rs34680764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34680764-G	NR	5E-16		0.036583	[0.028-0.045] unit increase	Affymetrix [321788] (imputed)	N
1534	chr12	124513776	124513777	rs34680764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34680764-G	NR	2E-10		0.0276673	[0.019-0.036] unit increase	Affymetrix [321016] (imputed)	N
1534	chr12	124516910	124516911	rs12829378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.31	NR	rs12829378-A	NR	1E-20		0.0346	[0.027-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1534	chr12	124516910	124516911	rs12829378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs12829378-A	NR	7E-28		0.0425	[0.035-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1534	chr12	124516910	124516911	rs12829378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs12829378-A	NR	2E-19		0.0352	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	2E-59		0.0490279	[0.043-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	2E-60		0.0494764	[0.044-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	2E-38		0.0394754	[0.034-0.045] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	2E-14		0.0240188	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	3E-10		0.0189349	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1716403-T	NR	8E-43		0.0418091	[0.036-0.048] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124519845	124519846	rs1716403	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	12q24.31	intergenic	rs1716403-?	NR	2E-6	(Baseline)	0.14	[0.081-0.199] ng/dL decrease	Affymetrix [2543887] (imputed)	N
1535	chr12	124520330	124520331	rs1716409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs1716409-A	0.317868	4E-9		0.0230354	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1535	chr12	124520330	124520331	rs1716409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	FAM101A	rs1716409-G	0.681259	3E-13		0.017510558	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1535	chr12	124520814	124520815	rs34382598	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.31		rs34382598-?	NR	2E-16		0.0253865	[0.019-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1535	chr12	124521976	124521977	rs71458832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458832-T	NR	3E-29		0.0695051	[0.057-0.082] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124521976	124521977	rs71458832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458832-T	NR	4E-30		0.0706005	[0.058-0.083] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124521976	124521977	rs71458832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458832-T	NR	1E-20		0.0581066	[0.046-0.07] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124521976	124521977	rs71458832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458832-T	NR	1E-8		0.0367516	[0.024-0.049] unit increase	Affymetrix [321788] (imputed)	N
1535	chr12	124521976	124521977	rs71458832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458832-T	NR	7E-21		0.058622	[0.046-0.071] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	1E-34		0.0610213	[0.051-0.071] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	1E-34		0.0610378	[0.051-0.071] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	1E-20		0.0467076	[0.037-0.057] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	4E-10		0.0322988	[0.022-0.042] unit decrease	Affymetrix [321788] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	2E-9		0.029765	[0.02-0.039] unit decrease	Affymetrix [321016] (imputed)	N
1535	chr12	124524637	124524638	rs139254114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs139254114-T	NR	1E-23		0.0502817	[0.04-0.06] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124527214	124527215	rs71458833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458833-G	NR	4E-44		0.0610662	[0.052-0.07] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124527214	124527215	rs71458833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs71458833-G	NR	2E-47		0.0635355	[0.055-0.072] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124528177	124528178	rs10846585	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.31	CCDC92	rs10846585-?	NR	3E-6	(LPE 18:1)	0.32164118	[0.19-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1535	chr12	124529193	124529194	rs11057429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057429-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124531879	124531880	rs60938452	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs60938452-?	NR	6E-56				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124531879	124531880	rs60938452	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs60938452-?	NR	3E-28				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	5E-64		0.0528012	[0.047-0.059] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	2E-64		0.0530317	[0.047-0.059] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	4E-34		0.0384231	[0.032-0.045] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	6E-23		0.0320376	[0.026-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	2E-19		0.0281528	[0.022-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1535	chr12	124539536	124539537	rs1906937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs1906937-A	NR	3E-39		0.0414275	[0.035-0.048] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124539790	124539791	rs825458	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs825458-?	NR	4E-13		0.005574	[0.0037-0.0074] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1535	chr12	124547823	124547824	rs34682942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34682942-A	NR	7E-15		0.0381962	[0.029-0.048] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124547823	124547824	rs34682942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34682942-A	NR	4E-15		0.0385114	[0.029-0.048] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124547823	124547824	rs34682942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34682942-A	NR	2E-8		0.0278287	[0.018-0.038] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124547823	124547824	rs34682942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs34682942-A	NR	5E-10		0.0309334	[0.021-0.041] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124560455	124560456	rs1716393	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	FAM101A	rs1716393-G	0.403636	2E-33		0.0240823	[0.02-0.028] unit increase	Affymetrix [NR] (imputed)	N
1535	chr12	124565756	124565757	rs73221443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs73221443-A	NR	2E-10		0.0384359	[0.027-0.05] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124565756	124565757	rs73221443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs73221443-A	NR	2E-10		0.0385213	[0.027-0.05] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124565756	124565757	rs73221443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs73221443-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124567557	124567558	rs117939808	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs117939808-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124568455	124568456	rs825476	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	12q24.31	ZNF664-FAM101A	rs825476-C	0.41945071095672	7E-13		0.0524	[0.038-0.067] unit decrease	NR [5035015] (imputed)	N
1535	chr12	124576917	124576918	rs61953589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953589-A	NR	4E-9		0.0201908	[0.013-0.027] unit increase	Affymetrix [321788] (imputed)	N
1535	chr12	124576917	124576918	rs61953589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953589-A	NR	8E-9		0.0191017	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1535	chr12	124577176	124577177	rs372527826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs372527826-A	NR	4E-14		0.0303788	[0.022-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124577176	124577177	rs372527826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs372527826-A	NR	3E-14		0.0305313	[0.023-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124577176	124577177	rs372527826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs372527826-A	NR	5E-9		0.0237604	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124579212	124579213	rs11057449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057449-C	NR	7E-10		0.0250588	[0.017-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124580057	124580058	rs825498	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs825498-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124580352	124580353	rs7297147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs7297147-G	NR	3E-19		0.0265911	[0.021-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1535	chr12	124580352	124580353	rs7297147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs7297147-G	NR	2E-14		0.0218548	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1535	chr12	124583130	124583131	rs117204049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117204049-T	NR	1E-12		0.0819544	[0.059-0.105] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124583130	124583131	rs117204049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117204049-T	NR	7E-13		0.0828767	[0.06-0.105] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124583130	124583131	rs117204049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117204049-T	NR	9E-11		0.0755713	[0.053-0.098] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124583130	124583131	rs117204049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117204049-T	NR	4E-8		0.0640941	[0.041-0.087] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124585335	124585336	rs11057450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057450-A	NR	6E-10		0.0189207	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1535	chr12	124585335	124585336	rs11057450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs11057450-?	NR	1E-45				NR [~ 8900000] (imputed)	N
1535	chr12	124585626	124585627	rs12309254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12309254-C	NR	1E-8		0.0166139	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1535	chr12	124585945	124585946	rs11057452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057452-T	NR	2E-46		0.0421345	[0.036-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124585945	124585946	rs11057452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057452-T	NR	1E-46		0.042271	[0.036-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124585945	124585946	rs11057452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057452-T	NR	2E-30		0.034118	[0.028-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124585945	124585946	rs11057452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057452-T	NR	6E-35		0.0367195	[0.031-0.043] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124586141	124586142	rs111668692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs111668692-T	NR	3E-43		0.0399442	[0.034-0.046] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124592709	124592709	rs779762282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs779762282-T	NR	6E-68		0.0500087	[0.044-0.056] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124592709	124592709	rs779762282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs779762282-T	NR	5E-69		0.0504205	[0.045-0.056] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124592709	124592709	rs779762282	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs779762282-T	NR	1E-46		0.0416364	[0.036-0.047] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124601013	124601014	rs394854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs394854-A	NR	7E-12		0.0237839	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124601013	124601014	rs394854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs394854-A	NR	2E-12		0.024363	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124601013	124601014	rs394854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs394854-A	NR	6E-10		0.0216818	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124601013	124601014	rs394854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs394854-A	NR	2E-9		0.0211856	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124602645	124602646	rs408092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs408092-A	NR	2E-8		0.0210959	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124602919	124602920	rs379457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs379457-T	NR	1E-8		0.0212739	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124605286	124605287	rs427244	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	12q24.31	NR	rs427244-A	0.165	4E-7		1.926	[1.489-2.493]	Illumina [274400]	N
1535	chr12	124605731	124605732	rs61953614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs61953614-A	NR	3E-8		0.0181995	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1535	chr12	124614537	124614538	rs7969148	24667120	Zhang TX	2014-03-25	J Med Genet	Genome-wide association study identifies new disease loci for isolated clubfoot.	Clubfoot	396 European ancestry cases, 1,000 European ancestry controls	370 European ancestry cases, 363 European ancestry controls	12q24.31	ZNF664, NCOR2	rs7969148-?	0.1474	2E-7		1.58	[NR]	Affymetrix [620820] (imputed)	N
1535	chr12	124620184	124620185	rs10846606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846606-G	NR	9E-33		0.0349383	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124620184	124620185	rs10846606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846606-G	NR	3E-33		0.0352328	[0.029-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124620184	124620185	rs10846606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846606-G	NR	2E-25		0.0308593	[0.025-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124620184	124620185	rs10846606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846606-G	NR	6E-28		0.0324767	[0.027-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124620789	124620790	rs142816416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs142816416-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124629164	124629165	rs35739223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs35739223-G	NR	2E-22		0.0355846	[0.028-0.043] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124629164	124629165	rs35739223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs35739223-G	NR	5E-23		0.0360239	[0.029-0.043] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124629164	124629165	rs35739223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs35739223-G	NR	2E-12		0.0258015	[0.019-0.033] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124629164	124629165	rs35739223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs35739223-G	NR	6E-14		0.0276375	[0.02-0.035] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124631596	124631597	rs7311936	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	12q24.31	FAM101A	rs7311936-C	NR	7E-8	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1535	chr12	124631596	124631597	rs7311936	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	12q24.31	FAM101A	rs7311936-C	NR	2E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1535	chr12	124633208	124633209	rs61953638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953638-T	NR	2E-17		0.0536626	[0.041-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124633208	124633209	rs61953638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953638-T	NR	2E-17		0.0537359	[0.041-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124633208	124633209	rs61953638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953638-T	NR	5E-13		0.0462375	[0.034-0.059] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124633208	124633209	rs61953638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61953638-T	NR	6E-14		0.0479823	[0.035-0.061] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs3926666-C	NR	2E-22		0.0296121	[0.024-0.036] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs3926666-C	NR	2E-23		0.0302003	[0.024-0.036] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs3926666-C	NR	1E-17		0.0261628	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs3926666-C	NR	4E-17		0.0257491	[0.02-0.032] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs3926666-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124634712	124634713	rs3926666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs3926666-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124635443	124635444	rs202103717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs202103717-G	NR	3E-9		0.0223059	[0.015-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1535	chr12	124635443	124635444	rs202103717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs202103717-G	NR	4E-8		0.0199802	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1535	chr12	124637019	124637020	rs4765315	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs4765315-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1535	chr12	124637289	124637290	rs4765316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs4765316-G	NR	4E-11		0.0187786	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124637289	124637290	rs4765316	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs4765316-G	NR	4E-11		0.018817	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124637756	124637757	rs11057468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057468-T	NR	2E-21		0.0276332	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124637756	124637757	rs11057468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057468-T	NR	7E-22		0.0279781	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1535	chr12	124637756	124637757	rs11057468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057468-T	NR	2E-17		0.0249592	[0.019-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1535	chr12	124637756	124637757	rs11057468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057468-T	NR	2E-17		0.0250572	[0.019-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1535	chr12	124637756	124637757	rs11057468	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	FAM101A	rs11057468-C	0.606532	1E-12		0.0139632	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	5E-10		0.0231095	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	9E-10		0.022779	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	5E-10		0.0230832	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	5E-10		0.0230752	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	4E-10		0.0233323	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	4E-10		0.0233878	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124637887	124637888	rs11057469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057469-G	0.576115	2E-10		0.0238021	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1535	chr12	124641489	124641489	rs59364353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs59364353-TAA	NR	5E-9		0.0203059	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124641489	124641489	rs59364353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs59364353-TAA	NR	6E-9		0.0202514	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124642802	124642803	rs11613189	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	12q24.31	FAM101A	rs11613189-T	NR	4E-10	(EA)	0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1535	chr12	124642802	124642803	rs11613189	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	12q24.31	FAM101A	rs11613189-T	NR	2E-12		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1535	chr12	124645823	124645824	rs9888360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs9888360-C	NR	7E-15		0.022935	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124645823	124645824	rs9888360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs9888360-C	NR	5E-15		0.0230593	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
1535	chr12	124645823	124645824	rs9888360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs9888360-C	NR	3E-11		0.0197686	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1535	chr12	124648831	124648832	rs142973841	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	12q24.31	RFLNA	rs142973841-T	0.02	4E-6		3.0	[1.88-4.80]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1536	chr12	124651796	124651796	rs5801535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs5801535-GT	NR	3E-8		0.0159531	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1536	chr12	124662130	124662131	rs10846617	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	12q24.31	FAM101A	rs10846617-C	0.44	7E-10		0.014	[0.010-0.018] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1536	chr12	124662130	124662131	rs10846617	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	12q24.31	FAM101A	rs10846617-C	0.44	2E-7	(EA)	0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1536	chr12	124664901	124664902	rs12321961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12321961-A	NR	6E-12		0.0220183	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124666335	124666336	rs138808037	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs138808037-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1536	chr12	124667586	124667587	rs10846621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846621-C	NR	5E-9		0.0165273	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1536	chr12	124667586	124667587	rs10846621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846621-C	NR	1E-9		0.0170823	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1536	chr12	124667586	124667587	rs10846621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846621-C	NR	5E-8		0.0155676	[0.01-0.0212] unit decrease	Affymetrix [321169] (imputed)	N
1536	chr12	124667676	124667677	rs4765352	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	12q24.31	ZNF664, RFLNA	rs4765352-C	0.441	1E-10		0.015	[0.011-0.019] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1536	chr12	124667690	124667691	rs4765353	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	12q24.31	ZNF664, FAM101A	rs4765353-G	0.44	2E-14		0.0067	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1536	chr12	124667690	124667691	rs4765353	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	12q24.31	ZNF664, FAM101A	rs4765353-G	0.44	2E-9		0.00557	[0.0038-0.0074] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1536	chr12	124667706	124667707	rs11057491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs11057491-C	NR	2E-9		0.0345184	[0.023-0.046] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124667706	124667707	rs11057491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057491-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1536	chr12	124667706	124667707	rs11057491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.31		rs11057491-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1536	chr12	124670550	124670551	rs12816763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12816763-C	NR	1E-8		0.0234191	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124670550	124670551	rs12816763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12816763-C	NR	4E-9		0.0242047	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124670550	124670551	rs12816763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12816763-C	NR	7E-10		0.0255723	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124684413	124684414	rs80257761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs80257761-C	NR	2E-15		0.0463927	[0.035-0.058] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124684413	124684414	rs80257761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs80257761-C	NR	2E-15		0.0465582	[0.035-0.058] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124684413	124684414	rs80257761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs80257761-C	NR	5E-9		0.034556	[0.023-0.046] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124684413	124684414	rs80257761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs80257761-C	NR	4E-11		0.0388899	[0.027-0.05] unit increase	Affymetrix [321169] (imputed)	N
1536	chr12	124695006	124695007	rs143786003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs143786003-A	NR	5E-15		0.0610245	[0.046-0.076] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124695006	124695007	rs143786003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs143786003-A	NR	4E-15		0.0613553	[0.046-0.077] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124695006	124695007	rs143786003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs143786003-A	NR	2E-8		0.04407	[0.029-0.06] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124695006	124695007	rs143786003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs143786003-A	NR	4E-10		0.0492156	[0.034-0.065] unit increase	Affymetrix [321169] (imputed)	N
1536	chr12	124723220	124723221	rs79133148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs79133148-T	NR	3E-8		0.0211543	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1536	chr12	124738836	124738837	rs7961362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs7961362-G	NR	4E-8		0.0262279	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124745296	124745296	rs113560872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs113560872-AAAAG	NR	3E-8		0.0327398	[0.021-0.044] unit increase	Affymetrix [319769] (imputed)	N
1536	chr12	124745296	124745296	rs113560872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs113560872-AAAAG	NR	1E-9		0.0364179	[0.025-0.048] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124746862	124746863	rs12372180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.31	NR	rs12372180-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1536	chr12	124748859	124748860	rs880333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs880333-A	NR	3E-8		0.0335006	[0.022-0.045] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124752079	124752080	rs11057553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs11057553-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1536	chr12	124752079	124752080	rs11057553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.31		rs11057553-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1536	chr12	124776496	124776497	rs7306812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs7306812-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1536	chr12	124777479	124777480	rs7295354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.31		rs7295354-T	NR	9E-43		0.0184	[0.016-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1536	chr12	124777630	124777631	rs11615503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q24.31		rs11615503-A	0.490562	5E-24		0.0206311	[0.017-0.025] unit decrease	Illumina [13479295] (imputed)	N
1536	chr12	124777630	124777631	rs11615503	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.31	FAM101A, ZNF664-FAM101A	rs11615503-?	NR	2E-29		0.03250282	[0.027-0.038] unit decrease	Illumina [27896057] (imputed)	N
1536	chr12	124779756	124779757	rs924420	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs924420-G	NR	2E-8		0.0173319	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1536	chr12	124780200	124780201	rs114786346	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	12q24.31	RFLNA	rs114786346-?	NR	4E-8				NR [~ 24000000] (imputed)	N
1537	chr12	124792272	124792273	rs61933973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61933973-G	NR	1E-11		0.0348709	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
1537	chr12	124792272	124792273	rs61933973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs61933973-G	NR	1E-11		0.0347829	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
1537	chr12	124795282	124795283	rs117285912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117285912-A	NR	3E-9		0.0449397	[0.03-0.06] unit increase	Affymetrix [319769] (imputed)	N
1537	chr12	124795282	124795283	rs117285912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs117285912-A	NR	2E-9		0.0453329	[0.031-0.06] unit increase	Affymetrix [319769] (imputed)	N
1537	chr12	124796006	124796007	rs7963737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs7963737-T	NR	5E-9		0.0267594	[0.018-0.036] unit increase	Affymetrix [323123] (imputed)	N
1537	chr12	124798085	124798086	rs10846653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs10846653-G	NR	3E-13		0.024605	[0.018-0.031] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124798085	124798086	rs10846653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs10846653-G	NR	4E-11		0.0242916	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
1537	chr12	124798800	124798801	rs12318072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	FAM101A	rs12318072-T	NR	9E-10		0.0231204	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124799641	124799642	rs4765540	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	12q24.31	FAM101A	rs4765540-C	NR	3E-9	(additive)	1.08	[1.05-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
1537	chr12	124801225	124801226	rs1809889	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	12q24.31		rs1809889-T	0.2802	6E-14		1.0744405	[1.054413139-1.094848124]	Affymetrix, Illumina [NR] (imputed)	N
1537	chr12	124801225	124801226	rs1809889	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	12q24.31	FAM101A	rs1809889-T	0.2852	2E-8	(EA)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1537	chr12	124801225	124801226	rs1809889	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	12q24.31	FAM101A	rs1809889-T	0.289	4E-21		0.032	[0.026-0.038] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1537	chr12	124802441	124802442	rs2342469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	12q24.31	FAM101A	rs2342469-C	NR	7E-10		0.0183527	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1537	chr12	124804272	124804273	rs1316377	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	12q24.31	FAM101A	rs1316377-A	NR	5E-9		0.018724	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1537	chr12	124804521	124804522	rs12820367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	FAM101A	rs12820367-A	NR	2E-8		0.0179588	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1537	chr12	124810173	124810174	rs10846657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs10846657-?	NR	1E-62				NR [~ 8900000] (imputed)	N
1537	chr12	124812677	124812678	rs3741508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	12q24.31		rs3741508-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1537	chr12	124820704	124820705	rs1271309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	NCOR2	rs1271309-A	NR	5E-12		0.026343	[0.019-0.034] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124820704	124820705	rs1271309	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	12q24.31	NR	rs1271309-?	NR	2E-20				NR [up to 7000000]	N
1537	chr12	124820704	124820705	rs1271309	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.31	NR	rs1271309-A	0.160862	4E-15		0.033054	[0.025-0.041] unit decrease	NR [19129689] (imputed)	N
1537	chr12	124820704	124820705	rs1271309	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	12q24.31	NCOR2	rs1271309-A	0.1603	1E-17		0.1786	[0.14-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1537	chr12	124823911	124823911	rs534541609	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.31	NR	rs534541609-C	0.741913	3E-9		0.0221508	[0.015-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1537	chr12	124825591	124825592	rs1794973	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	NCOR2	rs1794973-C	NR	5E-12		0.0198956	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124826035	124826036	rs10846658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	12q24.31		rs10846658-A	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs2229840-T	0.166	2E-10		6.36869	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.31		rs2229840-T	0.1635	2E-21		0.17996755	[0.14-0.22] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.31	NCOR2	rs2229840-T	0.1597	3E-40		0.0341	[0.029-0.039] unit increase	Affymetrix [18391927] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	12q24.31	NCOR2	rs2229840-T	0.16	8E-24		0.03	[0.024-0.036] unit increase	Affymetrix [18391927] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	12q24.31	NCOR2	rs2229840-T	0.16	4E-20		0.03	[0.022-0.038] unit increase	Affymetrix [18391927] (imputed)	N
1537	chr12	124826461	124826462	rs2229840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q24.31		rs2229840-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1537	chr12	124826675	124826676	rs12314162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	NCOR2	rs12314162-T	NR	1E-10		0.0269239	[0.019-0.035] unit increase	Affymetrix [323123] (imputed)	N
1537	chr12	124826675	124826676	rs12314162	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs12314162-?	NR	5E-10	(male)	0.29554	[0.2-0.39] unit increase	Affymetrix [7794483] (imputed)	N
1537	chr12	124826675	124826676	rs12314162	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs12314162-?	NR	3E-8	(female)	0.18088	[0.12-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1537	chr12	124826675	124826676	rs12314162	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	12q24.31	NR	rs12314162-?	NR	1E-15		0.24049	[0.18-0.3] unit increase	Affymetrix [7794483] (imputed)	N
1537	chr12	124830445	124830446	rs75788176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	12q24.31	NCOR2	rs75788176-C	NR	4E-8		0.038761	[0.025-0.053] unit increase	Affymetrix [323123] (imputed)	N
1537	chr12	124834041	124834042	rs3782248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	NCOR2	rs3782248-G	NR	6E-9		0.0166173	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124834794	124834795	rs1244060	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs1244060-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1537	chr12	124839866	124839867	rs870050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.31		rs870050-G	NR	3E-9		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1537	chr12	124839866	124839867	rs870050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.31		rs870050-G	NR	5E-11		0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1537	chr12	124845697	124845698	rs11057591	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	NCOR2	rs11057591-G	NR	5E-8		0.0193418	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
1537	chr12	124850752	124850753	rs2141247	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs2141247-C	0.387212	2E-8		0.023193	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1537	chr12	124850752	124850753	rs2141247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	12q24.31	NCOR2	rs2141247-A	0.611748	2E-10		0.0146181695	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	5E-9		0.0244753	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	6E-9		0.0239768	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-9		0.0245747	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-8		0.0233419	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	2E-8		0.023631	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-9		0.024533	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	2E-8		0.0235485	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	1E-8		0.0241003	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-8		0.0231154	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	7E-9		0.0239896	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	2E-8		0.0234802	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-8		0.0231931	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-8		0.0233554	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	3E-9		0.0249133	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852563	124852564	rs11057601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057601-A	0.408506	2E-8		0.0236241	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124852608	124852609	rs11057602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	12q24.31		rs11057602-T	0.388988	2E-8		0.0237533	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1537	chr12	124853415	124853416	rs12369200	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	12q24.31	NR	rs12369200-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1537	chr12	124857762	124857763	rs11057604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	12q24.31		rs11057604-A	NR	3E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1537	chr12	124857762	124857763	rs11057604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q24.31		rs11057604-A	NR	9E-20		0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1537	chr12	124857822	124857823	rs28432783	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	12q24.31	MIR6880	rs28432783-T	0.393284	2E-26		0.00560097	[0.0046-0.0066] unit decrease	Affymetrix [13995440] (imputed)	N
1537	chr12	124859243	124859244	rs10773086	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	12q24.31	NR	rs10773086-?	NR	7E-6		3.75	[2.93-4.8]	Illumina [539000] (imputed)	N
1537	chr12	124861222	124861223	rs11837407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11837407-G	0.518196	9E-12				Affymetrix, Illumina [23467995] (imputed)	N
1537	chr12	124861725	124861726	rs7963151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.31		rs7963151-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1537	chr12	124863846	124863847	rs61931988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	NCOR2	rs61931988-C	0.558275	3E-11		0.014985421	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1537	chr12	124863846	124863847	rs61931988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	12q24.31	NR	rs61931988-C	0.558164	4E-14		0.014829	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1537	chr12	124867453	124867454	rs873206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.31	NCOR2	rs873206-C	0.4422	6E-10		0.013819569	[0.0094-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1537	chr12	124894183	124894184	rs12582168	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	12q24.31	NCOR2	rs12582168-C	0.256	9E-6	(Dominant model)	1.454	[1.21-1.748]	Illumina [733202]	N
1537	chr12	124905923	124905924	rs73225423	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q24.31	NCOR2	rs73225423-T	NR	2E-6		0.0522744	[0.031-0.074] unit increase	Illumina [13520550] (imputed)	N
1538	chr12	124950651	124950652	rs4765569	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	12q24.31	NCOR2	rs4765569-C	NR	2E-7		1.0887316	NR	Affymetrix, Illumina [8278136] (imputed)	N
1538	chr12	125002322	125002323	rs150954431	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	12q24.31		rs150954431-?	NR	4E-6		1.6217513	[0.94-2.31] unit increase	Illumina [9842460] (imputed)	N
1538	chr12	125002322	125002323	rs150954431	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	12q24.31	NCOR2	rs150954431-?	NR	5E-7	(Symptom count, EA)			Illumina [37426733] (imputed)	N
1538	chr12	125002891	125002892	rs143270813	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.31	NCOR2	rs143270813-?	NR	4E-12		0.04017237	[0.029-0.051] unit decrease	Illumina [27896057] (imputed)	N
1538	chr12	125017533	125017534	rs12825473	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.31	intergenic	rs12825473-T	0.7919	3E-6		0.0534	[0.031-0.076] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1538	chr12	125033932	125033933	rs12423712	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	12q24.31	NCOR2	rs12423712-?	0.05907	7E-6	(RVP)			Illumina [475971]	N
1539	chr12	125071026	125071027	rs11057692	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs11057692-A	0.76375	1E-8		0.0248181	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125075659	125075660	rs837493	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	12q24.31	NR	rs837493-G	0.451504	1E-8		0.0158241	[0.01-0.021] unit increase	Affymetrix [16580851] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	6E-9		0.0236169	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	3E-9		0.022343	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	2E-9		0.0227986	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	3E-10		0.0239529	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	3E-8		0.0225614	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	5E-10		0.0236696	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs837500-C	0.361534	2E-8		0.0216438	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125077566	125077567	rs837500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs837500-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1539	chr12	125081258	125081259	rs12426113	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	12q24.31	NR	rs12426113-C	NR	1E-8		5.69	z score decrease	Affymetrix [10847151] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	1E-9		0.0276866	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	8E-10		0.0274276	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	8E-9		0.0264439	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	1E-11		0.0307368	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	5E-9		0.0270507	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	3E-8		0.0260865	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	6E-10		0.0291192	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	6E-12		0.0314481	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	7E-10		0.0288217	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1539	chr12	125083695	125083696	rs12230272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs12230272-A	0.786716	3E-8		0.025766	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1539	chr12	125084955	125084956	rs77588756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	12q24.31		rs77588756-A	NR	8E-14		0.0219	[0.016-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1539	chr12	125085105	125085108	rs796518234	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs796518234-T	0.67265	3E-8		0.0252532	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1539	chr12	125086416	125086417	rs10846690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	12q24.31	NR	rs10846690-C	NR	2E-9		0.0207	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1539	chr12	125086416	125086417	rs10846690	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	NCOR2	rs10846690-T	0.153239	1E-15		0.0213727	[0.016-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1539	chr12	125087191	125087192	rs185216905	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.31	Intergenic	rs185216905-T	0.999	7E-7	(AA)	0.447	unit increase	Illumina [NR] (imputed)	N
1539	chr12	125095387	125095388	rs61705577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	12q24.31		rs61705577-G	NR	9E-9		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1540	chr12	125179578	125179579	rs10773100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs10773100-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1540	chr12	125230286	125230287	rs11057793	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q24.31		rs11057793-?	NR	2E-6		17.66	[10.41-24.91] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1540	chr12	125230286	125230287	rs11057793	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		12q24.31	NCOR2, SCARB1	rs11057793-T	0.75	5E-8		17.66	[11.31-24.01] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1540	chr12	125243573	125243574	rs61932563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs61932563-A	NR	1E-9		0.0275	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1540	chr12	125259887	125259888	rs838876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs838876-A	0.318558	9E-10		0.0261159	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125259887	125259888	rs838876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs838876-A	0.318539	2E-25		0.0413967	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125259887	125259888	rs838876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs838876-A	0.318558	1E-10		0.0275592	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1540	chr12	125259887	125259888	rs838876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs838876-A	0.318558	2E-9		0.025611	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1540	chr12	125259887	125259888	rs838876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs838876-A	0.318558	2E-12		0.029803	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1540	chr12	125259887	125259888	rs838876	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.31		rs838876-A	0.3755	5E-9		0.0069	[0.0045-0.0093] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1540	chr12	125261592	125261593	rs838880	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs838880-T	NR	3E-48		0.0392	[0.034-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1540	chr12	125261592	125261593	rs838880	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs838880-T	NR	4E-36		0.0338	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1540	chr12	125261592	125261593	rs838880	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.31		rs838880-T	0.5902	3E-9		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1540	chr12	125261592	125261593	rs838880	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	intergenic	rs838880-T	0.6042	3E-10		0.0174	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1540	chr12	125261592	125261593	rs838880	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.31	ZNF664	rs838880-T	0.674	1E-34	(Trans-ethnic initial)	0.0484	[0.041-0.056] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1540	chr12	125261592	125261593	rs838880	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	12q24.31	SCARB1	rs838880-T	0.674	1E-34	(Trans-ethnic initial)	0.0484	[0.041-0.056] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1540	chr12	125261592	125261593	rs838880	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	12q24.31	SCARB1	rs838880-C	0.34	6E-32		0.048	[NR] unit increase	NR [NR] (imputed)	N
1540	chr12	125261592	125261593	rs838880	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	12q24.31	SCARB1	rs838880-C	0.31	3E-14		0.61	[0.43-0.79] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1540	chr12	125264017	125264018	rs701105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs701105-G	NR	5E-9		0.0324	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1540	chr12	125264286	125264287	rs838886	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	12q24.31	SCARB1	rs838886-T	0.35	2E-18		0.058	[0.044-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	1E-8		0.0242432	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	6E-11		0.0274817	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	7E-14		0.0315131	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	5E-9		0.0243799	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	2E-15		0.0333288	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	3E-20		0.0381616	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	3E-25		0.0417442	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs3741521-G	0.33029	6E-21		0.0386206	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs3741521-?	NR	2E-16		0.007408	[0.0053-0.0095] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1540	chr12	125264292	125264293	rs3741521	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.31	SBNO1	rs3741521-?	NR	2E-12		0.007567	[0.0055-0.0097] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs921919-G	0.330476	4E-9		0.0247812	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	2E-21		0.0384262	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	3E-28		0.0433452	[0.036-0.051] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs921919-G	0.330476	4E-18		0.0357782	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs921919-G	0.330481	4E-9		0.0256316	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	7E-22		0.0387747	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	6E-26		0.042235	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	1E-22		0.0388652	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs921919-G	0.330481	2E-11		0.0298785	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	3E-11		0.0278395	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	2E-14		0.0319942	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	2E-27		0.0426255	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	5E-26		0.0418948	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	9E-21		0.0377379	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	3E-28		0.0432841	[0.036-0.051] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	2E-21		0.038282	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	2E-27		0.0430436	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	3E-20		0.037279	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs921919-G	0.33049	1E-27		0.0430767	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1540	chr12	125265200	125265201	rs921919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	12q24.31		rs921919-A	NR	2E-86		0.0437	[0.039-0.048] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1540	chr12	125265200	125265201	rs921919	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	SCARB1	rs921919-G	0.330838	3E-90		0.0415939	[0.038-0.046] unit increase	Affymetrix [NR] (imputed)	N
1540	chr12	125265200	125265201	rs921919	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	SCARB1	rs921919-G	0.330749	5E-68		0.0370772	[0.033-0.041] unit increase	Affymetrix [NR] (imputed)	N
1540	chr12	125283402	125283403	rs1672907	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs1672907-G	0.496484	5E-8		0.022333	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1540	chr12	125283402	125283403	rs1672907	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs1672907-G	0.496484	2E-11		0.0269903	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1540	chr12	125283402	125283403	rs1672907	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	12q24.31		rs1672907-G	0.496484	5E-9		0.023849	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1540	chr12	125283765	125283766	rs10773105	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	12q24.31		rs10773105-T	0.577	7E-9		0.0066	[0.0044-0.0088] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1540	chr12	125284670	125284671	rs74830677	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs74830677-?	NR	5E-20		0.564158	[0.44-0.69] unit increase	NR [9800000] (imputed)	N
1540	chr12	125284747	125284748	rs5888	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.31	SBNO1	rs5888-?	NR	5E-15		0.007615	[0.0057-0.0095] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1540	chr12	125286036	125286037	rs838912	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs838912-T	0.494522	2E-8		0.0226758	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1540	chr12	125287647	125287648	rs838909	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs838909-?	NR	3E-11		0.006281	[0.0044-0.0082] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1540	chr12	125290855	125290856	rs865716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	12q24.31		rs865716-A	0.500968	3E-13		0.0289536	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1540	chr12	125290855	125290856	rs865716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	12q24.31		rs865716-A	0.500984	4E-15		0.0307458	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
1540	chr12	125290855	125290856	rs865716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	12q24.31		rs865716-A	0.500984	2E-15		0.0311409	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1540	chr12	125290855	125290856	rs865716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	12q24.31		rs865716-A	0.500984	2E-16		0.0319983	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1540	chr12	125290855	125290856	rs865716	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	12q24.31		rs865716-A	0.500984	2E-10		0.0258473	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1540	chr12	125292359	125292360	rs150728540	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	12q24.31		rs150728540-?	NR	3E-11		0.27197	[0.19-0.36] unit increase	NR [9800000] (imputed)	N
1540	chr12	125292359	125292360	rs150728540	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs150728540-?	NR	8E-59		0.667021	[0.58-0.75] unit increase	NR [9800000] (imputed)	N
1540	chr12	125292359	125292360	rs150728540	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	12q24.31		rs150728540-?	NR	7E-34		0.525339	[0.44-0.61] unit increase	NR [9800000] (imputed)	N
1540	chr12	125293596	125293597	rs838900	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	12q24.31	SCARB1	rs838900-A	0.41	4E-6	(male)	0.206	[0.12-0.29] unit decrease	Illumina [6380737] (imputed)	N
1540	chr12	125294816	125294817	rs201357313	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs201357313-?	NR	4E-13		0.369865	[0.27-0.47] unit increase	NR [9800000] (imputed)	N
1540	chr12	125296426	125296427	rs201977189	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs201977189-?	NR	2E-16		0.581225	[0.44-0.72] unit increase	NR [9800000] (imputed)	N
1540	chr12	125296426	125296427	rs201977189	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	12q24.31		rs201977189-?	NR	3E-11		0.48891	[0.34-0.64] unit increase	NR [9800000] (imputed)	N
1540	chr12	125298854	125298855	rs187831231	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs187831231-?	NR	4E-33		0.666285	[0.55-0.78] unit increase	NR [9800000] (imputed)	N
1540	chr12	125298854	125298855	rs187831231	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	12q24.31		rs187831231-?	NR	2E-17		0.476807	[0.35-0.6] unit increase	NR [9800000] (imputed)	N
1540	chr12	125298854	125298855	rs187831231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs187831231-C	NR	4E-17		0.5913	[0.45-0.73] unit increase	Affymetrix [9000000] (imputed)	N
1540	chr12	125299541	125299542	rs5891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs5891-T	NR	1E-11		0.078	[0.055-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1540	chr12	125299613	125299614	rs5890	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	12q24.31		rs5890-?	NR	2E-28		0.450914	[0.37-0.54] unit increase	NR [9800000] (imputed)	N
1540	chr12	125299613	125299614	rs5890	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	12q24.31		rs5890-?	NR	3E-17		0.355912	[0.27-0.44] unit increase	NR [9800000] (imputed)	N
1540	chr12	125303253	125303254	rs112403212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs112403212-T	0.132973	7E-17				Affymetrix, Illumina [24246363] (imputed)	N
1540	chr12	125303253	125303254	rs112403212	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	12q24.31	SCARB1	rs112403212-C	0.858555	1E-9		0.017437	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1540	chr12	125303253	125303254	rs112403212	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	12q24.31	SCARB1	rs112403212-C	0.85857	1E-8		0.0171883	[0.011-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1540	chr12	125303253	125303254	rs112403212	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	12q24.31	SCARB1	rs112403212-C	0.858528	5E-13		0.0217652	[0.016-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1540	chr12	125303274	125303275	rs34399476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.31		rs34399476-C	NR	4E-10		0.0216	[0.015-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1540	chr12	125303274	125303275	rs34399476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.31		rs34399476-C	NR	7E-11		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1540	chr12	125303274	125303275	rs34399476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.31	SCARB1	rs34399476-C	0.855649	8E-21		0.030267334	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1540	chr12	125303274	125303275	rs34399476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.31	SCARB1	rs34399476-C	0.855591	9E-16		0.0256642	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1540	chr12	125303274	125303275	rs34399476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.31	SCARB1	rs34399476-C	0.855617	1E-9		0.019417312	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1540	chr12	125303281	125303282	rs10846740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	12q24.31	SCARB1	rs10846740-T	0.141707	9E-14		0.02412078	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.31	SCARB1	rs11057830-?	NR	2E-15		0.0295	[0.023-0.036] unit increase	Affymetrix [5701386] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	12q24.31	SCARB1	rs11057830-A	0.138404	2E-8		0.045655187	[0.03-0.062] unit increase	Affymetrix [7288503] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	12q24.31	SCARB1	rs11057830-A	0.1465	2E-18		0.0655	[0.051-0.08] unit increase	Affymetrix [at least 7947838] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	12q24.31	SCARB1	rs11057830-A	0.1474	3E-20		0.0821	[0.065-0.1] unit increase	NR [8041861] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	12q24.31	SCARB1	rs11057830-A	0.14991	7E-9		3.67	[2.44-4.9] (nmol/min/ml) increase	Affymetrix, Illumina [13572687] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	12q24.31	SCARB1	rs11057830-A	0.147	4E-9		1.07	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1541	chr12	125307052	125307053	rs11057830	21729881	Major JM	2011-07-05	Hum Mol Genet	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 cases, 1,359 controls	12q24.31	SCARB1	rs11057830-A	0.15	8E-9		0.03	[0.01-0.05] unit increase	Illumina [NR]	N
1541	chr12	125308681	125308682	rs10846742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.31		rs10846742-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1541	chr12	125308681	125308682	rs10846742	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	12q24.31	SCARB1	rs10846742-?	NR	4E-11		0.03092	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1541	chr12	125311719	125311720	rs11057837	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	12q24.31	SCARB1	rs11057837-T	0.101672	4E-9		1.08	[1.05-1.11]	NR [8126035] (imputed)	N
1541	chr12	125312072	125312073	rs10773106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	12q24.31		rs10773106-G	NR	2E-12		0.0268	[0.019-0.034] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	12q24.31		rs10846744-G	0.857502	2E-8		0.0322654	[0.021-0.044] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index b* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	12q24.31	SCARB1	rs10846744-G	0.317	5E-32		0.35	unit decrease	Illumina [5032876] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	12q24.31		rs10846744-C	0.668633	2E-13		0.0297732	[0.022-0.038] unit increase	Illumina [13476323] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	12q24.31		rs10846744-C	NR	8E-11		0.0406	[0.028-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	12q24.31		rs10846744-C	NR	9E-9		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	12q24.31	NR	rs10846744-C	NR	4E-9		0.0199	[0.013-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs10846744-C	NR	4E-16		0.0275	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	12q24.31	NR	rs10846744-C	NR	2E-18		0.0296	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	12q24.31	NR	rs10846744-C	NR	2E-21		0.0322	[0.026-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	SCARB1	rs10846744-G	0.673841	8E-14	(carotene diol (1))	0.173	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	12q24.31	SCARB1	rs10846744-G	0.673841	2E-12	(alpha-tocopherol)	0.169	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.31	NR	rs10846744-C	0.149098	3E-17		0.021899	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q24.31	NR	rs10846744-C	0.144157	3E-11		0.01826	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	12q24.31	NR	rs10846744-C	0.148114	1E-11		0.018239	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	SCARB1	rs10846744-C	0.3084	3E-14		0.0252	[0.019-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1541	chr12	125312424	125312425	rs10846744	20442857	Suchindran S	2010-04-29	PLoS Genet	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	12q24.31	SCARB1	rs10846744-C	0.15	1E-8	(activity)	4.6	[NR] nmol/ml/min increase	Affymetrix [360811]	N
1541	chr12	125314779	125314780	rs111560619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs111560619-T	NR	2E-11		0.0583	[0.041-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	12q24.31		rs7485656-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	12q24.31		rs7485656-A	0.86	2E-13				Affymetrix [10369434] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	12q24.31	SCARB1	rs7485656-G	0.151356	3E-8		1.09	[1.06-1.12]	NR [10903881] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	12q24.31	SCARB1	rs7485656-?	NR	4E-13		0.0450854	[0.033-0.057] unit increase	Illumina [4804024] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	12q24.31	SCARB1	rs7485656-G	0.140678	4E-23		0.03173232	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7485656-A	NR	8E-7		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7485656-A	NR	2E-8		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1541	chr12	125315646	125315647	rs7485656	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7485656-A	0.819	2E-6	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1541	chr12	125315960	125315961	rs73227581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs73227581-A	NR	1E-13		0.0577	[0.042-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125315960	125315961	rs73227581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs73227581-A	NR	8E-10		0.0479	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125316030	125316031	rs11057839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.31	NR	rs11057839-T	0.136027	8E-11				Affymetrix, Illumina [20825802] (imputed)	N
1541	chr12	125316054	125316055	rs11057840	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q24.31	SCARB1	rs11057840-A	0.858	2E-13		0.067	[0.049-0.085] unit decrease	Affymetrix [7947838] (imputed)	N
1541	chr12	125316742	125316743	rs11057841	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	12q24.31	SCARB1	rs11057841-T	0.15	6E-14	(activity)	0.0286	[0.019-0.038] ng/ml increase	Illumina [796174]	N
1541	chr12	125317246	125317247	rs12580803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs12580803-A	0.82844	3E-9		0.0290862	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs12580803-A	0.82844	1E-10		0.0309044	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs12580803-A	0.82844	5E-9		0.0289112	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs12580803-A	0.82844	4E-8		0.0273867	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs12580803-A	0.82844	2E-10		0.0306857	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs12580803-G	NR	8E-21		0.031	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125317246	125317247	rs12580803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs12580803-G	NR	4E-17		0.028	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125320849	125320850	rs4765623	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	12q24.31	NR	rs4765623-?	0.34	3E-12		1.14	1.10-1.18	Illumina [7437091] (imputed)	N
1541	chr12	125320849	125320850	rs4765623	21131975	Purdue MP	2010-12-05	Nat Genet	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	12q24.31	SCARB1	rs4765623-?	0.34	3E-8		1.15	[1.09-1.20]	Illumina [586069]	N
1541	chr12	125323239	125323240	rs12582221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs12582221-A	NR	3E-8		0.0163254	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	9E-21		0.0550259	[0.043-0.067] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	4E-26		0.0601877	[0.049-0.071] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	8E-11		0.0406653	[0.028-0.053] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	2E-20		0.0548144	[0.043-0.066] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	1E-28		0.0619911	[0.051-0.073] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	3E-26		0.0608176	[0.05-0.072] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	1E-22		0.0566485	[0.045-0.068] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	6E-21		0.0548752	[0.043-0.066] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	2E-28		0.0621042	[0.051-0.073] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	12q24.31		rs61941676-C	0.872782	1E-21		0.0555595	[0.044-0.067] unit increase	NR [11722792] (imputed)	N
1541	chr12	125324797	125324798	rs61941676	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs61941676-?	NR	2E-20		0.01553	[0.012-0.019] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1541	chr12	125325009	125325010	rs61941677	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	12q24.31		rs61941677-C	0.872753	4E-18		0.0531568	[0.041-0.065] unit increase	NR [11722792] (imputed)	N
1541	chr12	125325009	125325010	rs61941677	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs61941677-C	0.872759	3E-16		0.0492556	[0.037-0.061] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125325009	125325010	rs61941677	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	12q24.31	NR	rs61941677-C	0.8724	4E-21	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1541	chr12	125325777	125325778	rs61005347	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.31	NR	rs61005347-?	NR	1E-11		0.07319	[0.052-0.094] unit decrease novel	Illumina [6108953] (imputed)	N
1541	chr12	125326152	125326153	rs7136506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	SCARB1	rs7136506-T	0.783597	2E-53		0.036204	[0.032-0.041] unit increase	Affymetrix [NR] (imputed)	N
1541	chr12	125326152	125326153	rs7136506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	SCARB1	rs7136506-T	0.783531	1E-39		0.031893	[0.027-0.037] unit increase	Affymetrix [NR] (imputed)	N
1541	chr12	125328374	125328375	rs3924313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3924313-G	0.678267	2E-9		0.0234636	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1541	chr12	125328374	125328375	rs3924313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs3924313-G	0.678267	6E-10		0.0240996	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1541	chr12	125328374	125328375	rs3924313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3924313-G	0.678267	4E-9		0.0230827	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1541	chr12	125328374	125328375	rs3924313	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs3924313-G	0.678267	3E-9		0.0232318	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1541	chr12	125329312	125329313	rs11057853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SCARB1	rs11057853-C	NR	3E-8		0.0158735	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1541	chr12	125329312	125329313	rs11057853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs11057853-C	NR	3E-8		0.0159341	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1541	chr12	125329312	125329313	rs11057853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs11057853-C	NR	2E-9		0.017798	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1541	chr12	125334067	125334068	rs7488791	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	12q24.31	NR	rs7488791-G	0.458579	6E-9		0.0111253	[0.0074-0.0149] unit increase	NR [NR]	N
1541	chr12	125335252	125335253	rs7954697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs7954697-C	NR	4E-8		0.015675	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1541	chr12	125335252	125335253	rs7954697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs7954697-C	NR	6E-11		0.0194926	[0.014-0.025] unit increase	Affymetrix [321788] (imputed)	N
1541	chr12	125335252	125335253	rs7954697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	12q24.31	SCARB1	rs7954697-C	NR	4E-8		0.0157216	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1541	chr12	125335252	125335253	rs7954697	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	12q24.31	NR	rs7954697-A	0.6096	2E-8		0.0098	[0.0065-0.0131] unit increase	NR [~ 27400000] (imputed)	N
1541	chr12	125335949	125335950	rs11057864	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	12q24.31	SCARB1	rs11057864-?	NR	6E-7				Illumina [491617]	N
1541	chr12	125338335	125338336	rs78194510	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	12q24.31	SCARB1	rs78194510-?		4E-9				NR [NR]	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	3E-13		0.0318846	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	5E-16		0.0335943	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	3E-23		0.0401051	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	1E-11		0.0294638	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279568	3E-14		0.0320864	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	1E-16		0.0342665	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	6E-20		0.0375933	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279568	6E-19		0.0362466	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	2E-17		0.0347062	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	1E-10		0.0277305	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	2E-22		0.0396278	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	2E-16		0.0340221	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	4E-13		0.0313729	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	8E-15		0.032043	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	2E-16		0.0350361	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	8E-19		0.0365916	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	5E-14		0.0312852	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs10773112-C	0.279562	2E-17		0.0358973	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.31		rs10773112-T	NR	4E-18		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	12q24.31	SCARB1	rs10773112-C	NR	1E-10		0.0209831	[0.015-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.31	NR	rs10773112-T	NR	4E-13		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs10773112-T	NR	5E-50		0.0413	[0.036-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs10773112-T	NR	8E-47		0.04	[0.035-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	SCARB1	rs10773112-?		6E-10		0.0244	[0.017-0.032] unit decrease	Illumina [31500000] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.31	SBNO1	rs10773112-?	NR	7E-17		0.008292	[0.0061-0.0104] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	12q24.31	SCARB1	rs10773112-?	NR	4E-9		0.696	[0.46-0.93] unit increase	Illumina [31978362] (imputed)	N
1541	chr12	125338528	125338529	rs10773112	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	12q24.31	SCARB1	rs10773112-T	0.6429	8E-43		0.039	[0.034-0.044] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1541	chr12	125339989	125339990	rs12229372	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.31	SCARB1	rs12229372-T	0.896707	2E-19		0.0298352	[0.023-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1541	chr12	125340446	125340447	rs10128951	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	12q24.31	SCARB1	rs10128951-A	0.373	2E-8		0.039	[0.025-0.053] unit increase	Affymetrix [7947838] (imputed)	N
1541	chr12	125345642	125345643	rs10744183	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	12q24.31	MMAB	rs10744183-?	NR	5E-14		0.006634	[0.0045-0.0087] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1541	chr12	125347764	125347764	rs10692614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs10692614-T	0.361308	2E-12		0.0304572	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125347764	125347764	rs10692614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs10692614-T	0.361308	6E-13		0.0291983	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs764754741-A	0.4294	1E-8		0.0243035	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	4E-22		0.0392025	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	7E-23		0.038927	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs764754741-A	0.4294	5E-22		0.0399328	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	9E-23		0.0398352	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	12q24.31		rs764754741-A	0.4294	2E-22		0.0389029	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	4E-15		0.0313786	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	2E-15		0.0334141	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	2E-16		0.0328522	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	9E-21		0.03797	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	1E-20		0.037747	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1541	chr12	125347768	125347768	rs764754741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	12q24.31		rs764754741-A	0.429396	8E-20		0.037113	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1541	chr12	125348262	125348263	rs4238001	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12q24.31		rs4238001-?	NR	5E-7		0.35	[0.21-0.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641043	4E-8		0.0230824	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641042	1E-23		0.0380004	[0.031-0.045] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641042	2E-23		0.0376582	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641042	2E-22		0.037199	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641042	3E-11		0.027027	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125349479	125349480	rs36226283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs36226283-G	0.641042	6E-23		0.0375058	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125350319	125350320	rs4569100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs4569100-G	0.641568	1E-10		0.0261701	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1541	chr12	125350319	125350320	rs4569100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	12q24.31		rs4569100-G	0.641568	9E-9		0.02358	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1541	chr12	125350319	125350320	rs4569100	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	12q24.31	SBNO1	rs4569100-?	NR	2E-13		0.007596	[0.0054-0.0098] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	12q24.31		rs67053123-A	0.287466	2E-12		0.0285864	[0.021-0.037] unit increase	Illumina [13476599] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	12q24.31		rs67053123-A	0.286081	1E-37		0.0688734	[0.058-0.079] unit increase	Illumina [13465896] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	SCARB1, UBC	rs67053123-?		4E-40		0.0679	[0.058-0.078] unit decrease	Illumina [31500000] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	12q24.31	SCARB1, UBC	rs67053123-?	NR	6E-9		0.02568	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	12q24.31	SCARB1, UBC	rs67053123-?	NR	1E-32		0.07064	[0.059-0.082] unit increase novel	Illumina [6108953] (imputed)	N
1541	chr12	125353809	125353810	rs67053123	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	12q24.31	SCARB1	rs67053123-A	0.15	1E-12	(HDL diameter)	0.11	[0.09-0.13] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	7E-44				Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	7E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	1E-24	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	8E-49				Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	6E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	12q24.31	SCARB1, UBC	rs57276302-A	NR	3E-27	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SCARB1, UBC	rs57276302-A	NR	5E-17	(Asian)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SCARB1, UBC	rs57276302-A	NR	4E-9	(EA)	0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	12q24.31	SCARB1, UBC	rs57276302-A	NR	2E-24		0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	SCARB1, UBC	rs57276302-A	NR	3E-20	(Asian)	0.01562	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125363986	125363987	rs57276302	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	12q24.31	SCARB1, UBC	rs57276302-A	NR	2E-24		0.0143	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1541	chr12	125368341	125368342	rs77717551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	12q24.31		rs77717551-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1541	chr12	125378408	125378409	rs111929233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.31		rs111929233-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1541	chr12	125380231	125380232	rs7298751	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	12q24.31		rs7298751-A	NR	3E-6		1.025	[0.6-1.45] unit decrease	Illumina [NR] (imputed)	N
1541	chr12	125380231	125380232	rs7298751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	12q24.31	NR	rs7298751-A	NR	5E-40		0.0496	[0.042-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1541	chr12	125380231	125380232	rs7298751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	12q24.31	NR	rs7298751-A	NR	7E-26		0.0396	[0.032-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1541	chr12	125380231	125380232	rs7298751	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7298751-G	NR	1E-11		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1541	chr12	125380231	125380232	rs7298751	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	12q24.31	NR	rs7298751-G	0.122	2E-13	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1541	chr12	125382251	125382252	rs35608584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.31	RNU6-927P	rs35608584-A	0.124996	3E-9		0.020240095	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1541	chr12	125399166	125399167	rs13624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.31		rs13624-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1541	chr12	125434715	125434716	rs4078216	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	12q24.31	DHX37	rs4078216-G	0.759913	4E-10		0.0139898	[0.0096-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1542	chr12	125451721	125451722	rs150152903	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Insulin levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	12q24.31	DHX37	rs150152903-A	0.001	3E-6		0.799	[0.46-1.13] unit increase	Illumina [at least 81396]	N
1542	chr12	125451721	125451722	rs150152903	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	12q24.31	DHX37	rs150152903-A	0.0018	4E-6		0.6682	[0.39-0.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1542	chr12	125519676	125519677	rs7973861	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	12q24.31	intergenic	rs7973861-C	0.16	6E-7		0.0944	[0.058-0.131] unit decrease	Illumina [6380737] (imputed)	N
1542	chr12	125521016	125521017	rs2344686	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	12q24.31	AACS	rs2344686-G	0.13	1E-21	(X - 19913)	0.254	[0.2-0.31] unit decrease	Illumina [7750367] (imputed)	N
1542	chr12	125540105	125540106	rs12228810	30237584	El Rouby N	2018-09-20	Pharmacogenomics J	Genome-wide association analysis of common genetic variants of resistant hypertension.	Resistant hypertension	297 European ancestry cases, 226 Hispanic cases, 623 European ancestry controls, 633 Hispanic controls	1,946 European ancestry cases, 471 European ancestry controls	12q24.31	AACS	rs12228810-C	0.88	9E-6		1.0869565	[NR]	Illumina [NR]	N
1542	chr12	125546574	125546575	rs12300899	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q24.31	NR	rs12300899-?	NR	5E-7				NR [up to 8466825] (imputed)	N
1543	chr12	125567752	125567753	rs6488987	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	12q24.31	AACS	rs6488987-C	0.36	2E-6		0.18	[0.10-0.26] unit increase	Illumina [5918868] (imputed)	N
1543	chr12	125584778	125584779	rs573701243	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	12q24.31	AACS	rs573701243-?		5E-12		0.8426	[0.6-1.08] unit decrease	Illumina [31500000] (imputed)	N
1543	chr12	125585691	125585692	rs60983647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	12q24.31	NR	rs60983647-A	NR	2E-9		0.0312	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1543	chr12	125593221	125593222	rs55657684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12q24.31		rs55657684-T	NR	2E-9		0.032	[0.022-0.042] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1543	chr12	125613747	125613748	rs12321593	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.31	NR	rs12321593-?	NR	1E-6				Affymetrix [NR]	N
1543	chr12	125665895	125665896	rs34375054	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.31	Intergenic	rs34375054-A	0.626	4E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
1543	chr12	125672489	125672490	rs146549691	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASH2L	5,361 Icelandic ancestry individuals	NA	12q24.31		rs146549691-C	0.01759	8E-13		0.0878105	[0.064-0.112] unit increase	Illumina [7506463] (imputed)	N
1543	chr12	125674489	125674490	rs1571885	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.31		rs1571885-A	0.21	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1544	chr12	125714595	125714596	rs75311705	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.31	Intergenic	rs75311705-A	0.991	3E-7	(AA)	0.56	NR unit increase	Illumina [NR] (imputed)	N
1544	chr12	125736002	125736003	rs117876032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	12q24.31	Intergenic	rs117876032-A	0.999	2E-6	(AA)	2.11	NR unit increase	Illumina [NR] (imputed)	N
1544	chr12	125799362	125799363	rs1666839	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q24.31	NR	rs1666839-A	0.622	4E-10		0.00699863	[0.0048-0.0092] unit decrease	NR [9732723] (imputed)	N
1544	chr12	125806226	125806227	rs326391	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.31		rs326391-C	0.382	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1544	chr12	125811055	125811056	rs550677	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.31	TMEM132B	rs550677-A	0.4281	4E-8		0.011120387	[0.0071-0.0151] unit increase	Affymetrix [11514654] (imputed)	N
1545	chr12	125875465	125875466	rs1147246	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	12q24.31	TMEM132B	rs1147246-?		2E-6				Illumina [859311]	N
1545	chr12	125917290	125917291	rs79411961	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	12q24.32	TMEM132B	rs79411961-T	0.0934152	6E-6		1.463	[1.24 - 1.725]	Illumina [5397362] (imputed)	N
1546	chr12	126018204	126018205	rs10744213	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	12q24.32	TMEM132B	rs10744213-?	NR	9E-11		0.01012	[0.0054-0.0148] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1546	chr12	126031247	126031248	rs74824119	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.32	NR	rs74824119-T	0.02613	5E-11	(BPNT1)	0.0366	NR unit increase	Illumina [1671387] (imputed)	N
1546	chr12	126049980	126049981	rs142261172	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	12q24.32	TMEM132B	rs142261172-A	0.004	9E-9	(adjusted for BMI)	0.106	[0.071-0.141] unit increase	Affymetrix [up to 73355677] (imputed)	N
1547	chr12	126143345	126143346	rs1043607	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	12q24.32	TMEM132B	rs1043607-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1547	chr12	126196288	126196289	rs11610782	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	12q24.32	intergenic	rs11610782-A	0.024	4E-7	(Hispanic, males)	0.108	[0.067-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr12	126296989	126296990	rs7136488	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (aggressiveness)	899 Japanese ancestry female cases, 4,835 Japanese ancestry female controls	1,030 Japanese ancestry female cases, 4,584 Japanese ancestry female controls	12q24.32	NR	rs7136488-T	0.439122205	9E-6		0.16040507	[0.089-0.231] unit decrease	Affymetrix [536506]	N
1549	chr12	126443739	126443740	rs11058405	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	12q24.32	NR	rs11058405-?	NR	9E-6		0.291287	[0.16-0.42] unit decrease	Affymetrix [656292] (imputed)	N
1549	chr12	126443751	126443752	rs11058406	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	12q24.32	NR	rs11058406-?	NR	9E-6		0.290447	[0.16-0.42] unit increase	Affymetrix [656292] (imputed)	N
1549	chr12	126463561	126463562	rs10847025	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.32	NR	rs10847025-C	0.06098	2E-8	(ANXA1)	0.02169	NR unit increase	Illumina [1671387] (imputed)	N
1550	chr12	126548816	126548817	rs917577	32066696	Dalvie S	2020-01-27	Transl Psychiatry	Genomic influences on self-reported childhood maltreatment.	Childhood maltreatment	124,711 European ancestry individuals	26,290 European ancestry individuals	12q24.32	intergenic	rs917577-?	NR	3E-8		5.564	NR z score increase	Affymetrix, Illumina [at least 800000] (imputed)	N
1550	chr12	126551204	126551205	rs11058488	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	12q24.32	LOC105370057	rs11058488-T		7E-6		2.7151	[1.53-3.9] unit increase	Illumina [7576458] (imputed)	N
1550	chr12	126554362	126554363	rs77206607	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	12q24.32	Intergenic	rs77206607-T		4E-6		2.759	[1.58-3.93] unit decrease	Illumina [7576458] (imputed)	N
1550	chr12	126567245	126567246	rs138850252	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	12q24.32	NR_110053.1	rs138850252-C		2E-6		2.9016	[1.71-4.1] unit decrease	Illumina [7576458] (imputed)	N
1550	chr12	126567795	126567796	rs4765074	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	12q24.32	NR	rs4765074-A	0.476674	6E-7		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1550	chr12	126582612	126582613	rs11058518	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	12q24.32	LOC101927464	rs11058518-T		6E-6		2.79	[1.58-4] unit increase	Illumina [7576458] (imputed)	N
1551	chr12	126729305	126729306	rs17489083	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	12q24.32	intergenic	rs17489083-G	0.12	7E-6	(male)	0.076	[0.043-0.109] unit decrease	Illumina [6380737] (imputed)	N
1551	chr12	126734268	126734269	rs7137521	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q24.32	TMEM132B, LOC728173	rs7137521-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1552	chr12	126752769	126752770	rs116226558	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	12q24.32	NR	rs116226558-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1552	chr12	126775517	126775518	rs140393326	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC007368.1	rs140393326-?	NR	8E-9		0.55	[NR] unit increase	Affymetrix [NR] (imputed)	N
1553	chr12	126967955	126967956	rs10744264	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	12q24.32	NR	rs10744264-G	NR	6E-6		0.145	[0.082-0.208] unit decrease	Illumina [6319684] (imputed)	N
1553	chr12	126985978	126985979	rs10773290	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	12q24.32	NDUFA5P6	rs10773290-?	NR	3E-6		0.135	[0.076-0.194] unit decrease	Illumina [6319684] (imputed)	N
1553	chr12	127007869	127007884	rs141337143	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q24.32	intergenic	rs141337143-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1554	chr12	127031061	127031062	rs530280439	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	12q24.32	LOC100128554, LOC100507206	rs530280439-C		5E-9		17.469	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1554	chr12	127080014	127080015	rs181261294	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	12q24.32	LOC100128554, LINC00944	rs181261294-T	0.01	9E-7	(African American)	1.7	[1.01-2.39] unit decrease	Illumina [up to 13042663] (imputed)	N
1555	chr12	127195596	127195597	rs7342289	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High general stress	8,104 Korean ancestry individuals	NA	12q24.32		rs7342289-G	NR	7E-6		1.28	[1.15-1.43]	Affymetrix [320700]	N
1555	chr12	127197681	127197682	rs1706497	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	12q24.32	NR	rs1706497-?		3E-8				NR [11140414]	N
1555	chr12	127197681	127197682	rs1706497	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	12q24.32	NR	rs1706497-T	NR	3E-8		5.54	z score increase	Affymetrix [10847151] (imputed)	N
1555	chr12	127237620	127237621	rs11335470	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	12q24.32	LINC00944	rs11335470-?	NR	2E-6	(Heterozygous)		[NR]	Illumina [15200000] (imputed)	N
1555	chr12	127237620	127237621	rs11335470	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	12q24.32	LINC00944	rs11335470-?	NR	3E-7	(Heterozygous)	2.4813895	[NR]	Illumina [15200000] (imputed)	N
1555	chr12	127239060	127239061	rs1798817	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	12q24.32	NR	rs1798817-?	NR	9E-6	(AA)	4.89	[3.89-5.89]	Illumina [905956]	N
1555	chr12	127248384	127248385	rs12306296	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	12q24.32	NR	rs12306296-G	NR	4E-6	(phenotype 3)	1.67	[NR]	Illumina [> 8000000] (imputed)	N
1555	chr12	127270581	127270582	rs575297553	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	12q24.32	LINC00944	rs575297553-T	0.0014	3E-6		1.073	[0.63-1.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1556	chr12	127291824	127291825	rs4558213	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	12q24.32	LINC00944, LINC02372	rs4558213-T	0.553	7E-7		2.35	[1.67-3.29]	Illumina [7206774] (imputed)	N
1557	chr12	127402726	127402727	rs1019348	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.32	NR	rs1019348-?	NR	1E-8				Affymetrix [NR]	N
1557	chr12	127414990	127414991	rs189380010	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	12q24.32	BC032874	rs189380010-?	NR	8E-6		1.43	[0.6-2.26] unit decrease	Illumina [at least 13000000] (imputed)	N
1557	chr12	127524287	127524288	rs74850901	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	12q24.32		rs74850901-?	NR	7E-9				Illumina [1128286]	N
1558	chr12	127638708	127638709	rs187583324	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	12q24.32	NR	rs187583324-G		3E-6		0.5542	[0.32-0.79] SD units increase	NR [10700000] (imputed)	N
1559	chr12	127685232	127685233	rs117957029	28494655	Duncan L	2017-05-12	Am J Psychiatry	Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa.	Anorexia nervosa	3,495 European ancestry cases, 10,982 European ancestry controls	NA	12q24.32	NR	rs117957029-C	0.023	2E-7		1.72	[1.52-1.92]	Illumina [10641224] (imputed)	N
1559	chr12	127687880	127687881	rs75214037	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	12q24.32		rs75214037-?	NR	8E-6		1.55338	[1.36-1.75]	NR [666300]	N
1559	chr12	127724530	127724531	rs3851663	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.32	RP11-955H22.1	rs3851663-A	0.5693	4E-6		0.0267	[0.015-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1559	chr12	127728524	127728525	rs2712540	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.32	RP11-955H22.1	rs2712540-A	0.3679	7E-6		0.0267	[0.015-0.038] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1559	chr12	127735864	127735865	rs10847303	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants in depression	7,795 European ancestry responder cases, 1,311 European ancestry non-responder cases	NA	12q24.32	Intergenic	rs10847303-?		2E-6		1.242236	[1.14-1.36]	Illumina [~ 12000000] (imputed)	N
1559	chr12	127792613	127792614	rs1823172	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	12q24.32	intergenic	rs1823172-?	0.08	5E-7	(Additive)	1.17	[1.10-1.25]	Affymetrix [319222]	N
1560	chr12	127813740	127813741	rs10744304	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	12q24.32	intergenic	rs10744304-A	0.63	9E-6		0.15	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1560	chr12	127826107	127826108	rs11835432	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts (age at onset)	5,503 European, Black, and other ancestry cases age 50 and older	NA	12q24.32	LOC100132564, LOC644489	rs11835432-T	0.1937	8E-6		0.6667	[NR] unit increase	Illumina [530101]	N
1560	chr12	127840231	127840232	rs7967228	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	12q24.32	intergenic	rs7967228-G	0.499	8E-6		0.667	unit decrease	Illumina [621723]	N
1561	chr12	127974137	127974138	rs185806653	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q24.32	Intergenic	rs185806653-A	NR	8E-7	(between families)	4.932	unit increase	Affymetrix [up to 15107142] (imputed)	N
1561	chr12	127989803	127989804	rs2682618	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	12q24.32	TMEM132B, TMEM132C	rs2682618-?		5E-6				Illumina [~ 5140000] (imputed)	N
1561	chr12	128030520	128030521	rs2947170	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	12q24.32	intergenic	rs2947170-T	0.07	1E-7		1.65	[1.37-1.99]	Affymetrix [7515136] (imputed)	N
1561	chr12	128045499	128045500	rs10773411	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals		RP11-351O2.1	rs10773411-A	0.3932	1E-6		0.0352	[0.021-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1562	chr12	128075011	128075012	rs12812736	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	12q24.32	intergenic	rs12812736-T	0.14	4E-6		0.55	[0.31-0.79] unit decrease	Illumina [NR] (imputed)	N
1562	chr12	128176234	128176235	rs7135417	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT5)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	12q24.32	SLC15A4	rs7135417-?	NR	1E-9		0.44	[0.3-0.58] unit increase	Affymetrix [2135235] (imputed)	N
1563	chr12	128230033	128230034	rs11059336	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	12q24.32	FLJ37505, LINC00507, LOC101927637	rs11059336-C	0.14	8E-7		0.63	[0.38-0.88] unit increase	Illumina [at least 4710000] (imputed)	N
1563	chr12	128234628	128234629	rs11834041	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	12q24.32	Intergenic	rs11834041-?	0.135	4E-6	(post-treatment)			Illumina [3017604] (imputed)	N
1563	chr12	128282211	128282212	rs1214208	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	12q24.32	LOC101927637, FLJ37505	rs1214208-G	0.09	9E-7		0.397	[0.24-0.55] unit decrease	Illumina [6379332] (imputed)	N
1563	chr12	128303497	128303498	rs79401605	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.32	NR	rs79401605-C	0.01742	2E-8	(RAB14)	0.02131	NR unit increase	Illumina [1671387] (imputed)	N
1563	chr12	128304417	128304418	rs11059374	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	12q24.32	intergenic	rs11059374-?	NR	2E-6	(SF5)			Affymetrix [5476100] (imputed)	N
1565	chr12	128501011	128501012	rs12809497	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	12q24.32	intergenic	rs12809497-C	0.4449	4E-6		2.09	[1.78-2.40]	Illumina [8809853] (imputed)	N
1565	chr12	128506200	128506201	rs4761053	25827505	Swaminathan S	2015-03-14	J Affect Disord	Characteristics of Bipolar I patients grouped by externalizing disorders.	Bipolar disorder	472 non-externalizing cases, 796 externalizing cases	436 non-externalizing European ancestry cases, 801 externalizing European ancestry cases	12q24.32	intergenic	rs4761053-?		7E-6	(early-onset vs. non-externalizing)	1.525	[NR]	Affymetrix [677171]	N
1565	chr12	128533429	128533430	rs9738548	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	12q24.32	intergenic	rs9738548-T	0.137	1E-6		0.141	[NR] unit increase	Illumina [625127]	N
1565	chr12	128539281	128539282	rs117129097	31362389	Chen YC	2019-07-29	J Clin Med	LRRTM4 and PCSK5 Genetic Polymorphisms as Markers for Cognitive Impairment in A Hypotensive Aging Population: A Genome-Wide Association Study in Taiwan.	Hypotension and cognitive impairment	56 Han Chinese ancestry cases, 1,799 Han Chinese ancestry controls	NA	12q24.32	intergenic	rs117129097-T	0.06	1E-6		4.03	[2.30-7.08]	NR [590244]	N
1565	chr12	128551715	128551716	rs1455286248	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Major depressive disorder	7,264 European ancestry cases, 49,373 European ancestry controls	NA	12q24.32		rs1455286248-G	0.7187704	3E-9		1.18		Affymetrix [15144048] (imputed)	N
1565	chr12	128558841	128558842	rs77440358	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	12q24.32	NR	rs77440358-T	0.073	5E-7		2.267	[1.648-3.118]	Illumina [7585599] (imputed)	N
1565	chr12	128572442	128572443	rs114943940	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	12q24.32		rs114943940-G	0.951199	5E-6		0.0280534	[0.016-0.04] unit decrease	Illumina [13900000] (imputed)	N
1566	chr12	128581837	128581838	rs199967866	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	12q24.32	NR	rs199967866-?	NR	5E-6		0.1425	[0.082-0.203] unit decrease	Illumina [at least 560000] (imputed)	N
1566	chr12	128652830	128652831	rs186879571	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	12q24.32	Intergenic	rs186879571-T	0.003	2E-7		0.532	NR unit decrease	Illumina [NR] (imputed)	N
1567	chr12	128736521	128736522	rs12297524	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		12q24.32	SLC15A4	rs12297524-T	NR	5E-6		0.1258	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1567	chr12	128757908	128757909	rs11059617	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.32	TMEM132C	rs11059617-T	0.335	2E-18	(Transmembrane protein 132C, TMEM132C.7173.141.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1567	chr12	128768519	128768520	rs7979166	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132C	5,360 Icelandic ancestry individuals	NA	12q24.32		rs7979166-T	0.3149	4E-41		0.25953	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
1567	chr12	128769037	128769038	rs28654182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.32	TMEM132C	rs28654182-A	0.67609375	3E-27	(TMEM132C, 7173_141_3)	0.28175265	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1567	chr12	128782021	128782022	rs11059635	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	12q24.32	TMEM132C	rs11059635-G	0.67	2E-7	(Dominant)	6.63	[2.95-14.9]	Illumina [555600]	N
1567	chr12	128796414	128796415	rs4882732	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	12q24.32	TMEM132C	rs4882732-C	0.199419	4E-6		0.545977	[0.31-0.78] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1567	chr12	128807384	128807385	rs7974528	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.32	GLT1D1	rs7974528-?	NR	4E-6	(ribose 5 P; ribulose 5 P)	0.19884032	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1567	chr12	128810510	128810511	rs1193394	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	12q24.32		rs1193394-?	NR	8E-6		0.213	unit increase	Illumina [NR] (imputed)	N
1568	chr12	128862208	128862209	rs1713616	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.32	NR	rs1713616-?	NR	7E-10				Affymetrix [NR]	N
1568	chr12	128894289	128894290	rs11059680	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132C	5,360 Icelandic ancestry individuals	NA	12q24.32		rs11059680-A	0.4615	3E-15		0.14133	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1568	chr12	128913893	128913894	rs4882760	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	12q24.32	TMEM132C	rs4882760-T	0.49071	4E-8		0.509	[0.33-0.69] unit decrease	Illumina [9955952] (imputed)	N
1569	chr12	128987806	128987807	rs10847631	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	12q24.32		rs10847631-?	NR	7E-6		0.24	[0.13-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1569	chr12	128999120	128999121	rs1531246	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	12q24.32	TMEM132C	rs1531246-G	0.18	2E-6		2.28	[1.62-3.21]	Affymetrix [583535] (imputed)	N
1569	chr12	129016490	129016491	rs12371559	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.32	NR	rs12371559-?	NR	6E-8				Affymetrix [NR]	N
1569	chr12	129024282	129024283	rs11059753	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	12q24.32	TMEM132C	rs11059753-?		2E-8	(dominant)			NR [NR] (imputed)	N
1569	chr12	129069681	129069682	rs144288546	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	12q24.32	Intergenic	rs144288546-A	NR	2E-8	(between families)	5.634	unit increase	Affymetrix [up to 15107142] (imputed)	N
1569	chr12	129070936	129070937	rs7299138	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	12q24.32	TMEM132C	rs7299138-T	0.718589466	2E-7		1.2594087	[1.15-1.37]	Illumina [10439017] (imputed)	N
1569	chr12	129095071	129095072	rs7296262	21423239	Willour VL	2011-03-25	Mol Psychiatry	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	12q24.32	TMEM132C	rs7296262-T	0.51	1E-6		1.22	[NR]	Affymetrix, Illumina [2408051] (imputed)	N
1569	chr12	129100756	129100757	rs117965239	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.32	NR	rs117965239-G	0.017	4E-12	(Transmembrane protein 132C, TMEM132C.7173.141.3)	0.68	[0.48-0.88] unit decrease	Affymetrix [10572788] (imputed)	N
1570	chr12	129117963	129117964	rs1844324	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.32	NR	rs1844324-?	NR	1E-6				Affymetrix [NR]	N
1570	chr12	129154940	129154941	rs12811924	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type)	345 European and unknown ancestry genotoxic compound-exposed cases, 262 European and unknown ancestry genotoxic compound-exposed controls,  333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	12q24.32	TMEM132C	rs12811924-?	NR	5E-6		1.74	[NR]	Illumina [> 2600000] (imputed)	N
1570	chr12	129184431	129184432	rs12829696	32998964	Trendowski MR	2020-09-30	Clin Cancer Res	Clinical and Genome-Wide Analysis of Multiple Severe Cisplatin-Induced Neurotoxicities in Adult-Onset Cancer Survivors.	Multiple severe cisplatin-induced neurotixicitiies in testicular cancer survivors	104 European ancestry cases, 196 European ancestry controls	NA	12q24.32	NR	rs12829696-T		9E-7		0.1076	[NR]	Illumina [5385324] (imputed)	N
1570	chr12	129186189	129186190	rs10773568	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	12q24.33	TMEM132C	rs10773568-A	0.42	3E-6		0.074	[0.043-0.105] unit increase	Affymetrix [1532051] (imputed)	N
1570	chr12	129223120	129223121	rs7136734	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	12q24.33	LOC102723323	rs7136734-?	NR	3E-6				Illumina [331281]	N
1570	chr12	129226102	129226103	rs12320517	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lentimicrobiaceae abundance in stool	5,959 Finnish ancestry individuals	NA	12q24.33		rs12320517-A	0.364959	4E-8		0.0296246	[0.019-0.04] unit decrease	Illumina [7980478] (imputed)	N
1571	chr12	129247382	129247383	rs12230170	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q24.33	TMEM132C, SLC15A4	rs12230170-T	0.1	6E-7	(EA)	0.5482	[0.34-0.76] unit increase	Illumina [~ 9000000] (imputed)	N
1571	chr12	129275026	129275027	rs6486730	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	12q24.33	SLC15A4	rs6486730-G	0.41	7E-6		1.13	[1.07-1.19]	Illumina [~ 2100000] (imputed)	N
1571	chr12	129278863	129278864	rs1059312	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	12q24.33	SLC15A4	rs1059312-?	NR	7E-10		1.12	[1.07-1.16]	Illumina [at least 5000000] (imputed)	N
1571	chr12	129278863	129278864	rs1059312	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	12q24.33	SLC15A4	rs1059312-?	0.391	3E-6	(EA)	1.14	[NR]	NR [6344733] (imputed)	N
1571	chr12	129278863	129278864	rs1059312	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	12q24.33	SLC15A4, TMEM132C	rs1059312-?	NR	2E-6		1.25	[1.14-1.37]	Illumina [NR]	N
1571	chr12	129278863	129278864	rs1059312	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	12q24.33	SLC15A4	rs1059312-C		1E-13		1.17	[1.12-1.21]	Illumina [644674]	N
1571	chr12	129289189	129289190	rs11059919	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	12q24.33	SLC15A4	rs11059919-G		8E-9		1.16	[NR]	Illumina [> 644674] (imputed)	N
1571	chr12	129294332	129294333	rs11059927	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	12q24.33	SLC15A4	rs11059927-?	NR	2E-8		1.21	[1.13-1.30]	Illumina [at least 5000000] (imputed)	N
1571	chr12	129296102	129296103	rs11059928	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.33	SLC15A4	rs11059928-A	0.786	2E-30		0.823	[0.79-0.86]	Illumina [11270530] (imputed)	N
1571	chr12	129299384	129299385	rs10847697	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	12q24.33	NR	rs10847697-A	NR	5E-8				Illumina [NR] (imputed)	N
1571	chr12	129300693	129300694	rs1385374	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	12q24.33	SLC15A4	rs1385374-A	0.2	8E-8		1.4605	[NR]	Illumina [421909] (imputed)	N
1571	chr12	129300693	129300694	rs1385374	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	12q24.33	SLC15A4	rs1385374-A	0.17	8E-8		1.41		Illumina [2100739] (imputed)	N
1571	chr12	129300693	129300694	rs1385374	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	12q24.33	SLC15A4	rs1385374-A	0.20	2E-11		1.26	[1.18-1.35]	Illumina [493955]	N
1571	chr12	129302254	129302255	rs4475963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	12q24.33	SLC15A4	rs4475963-G	0.370249	5E-17		0.019320006	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1571	chr12	129302254	129302255	rs4475963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	12q24.33	SLC15A4	rs4475963-G	0.370218	3E-13		0.016827408	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1571	chr12	129302254	129302255	rs4475963	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	12q24.33	NR	rs4475963-G	0.370213	2E-10		0.013524	[0.0094-0.0177] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1571	chr12	129324937	129324938	rs10744391	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	12q24.33	GLT1D1	rs10744391-A	0.29	1E-6		0.224	[0.13-0.31] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1572	chr12	129373072	129373073	rs7300146	29967481	Joo YB	2018-07-02	Sci Rep	Genetic variants in systemic lupus erythematosus susceptibility loci, XKR6 and GLT1D1 are associated with childhood-onset SLE in a Korean cohort.	Childhood onset systemic lupus erythematosus	96 Korean ancestry childhood onset cases, 685 Korean ancestry adult onset cases	NA	12q24.33	NR	rs7300146-C	0.17	1E-8		2.85	[1.98-4.10]	Illumina [648077]	N
1572	chr12	129454313	129454314	rs3847760	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	12q24.33		rs3847760-C	NR	9E-6		4.4426403	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1572	chr12	129462702	129462703	rs517020	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	12q24.33	GLT1D1	rs517020-?	NR	7E-7	(Additive model)	0.43	unit decrease	Illumina [542562]	N
1572	chr12	129475938	129475939	rs643473	22773346	Edwards DR	2012-07-07	Age (Dordr)	Linkage and association of successful aging to the 6q25 region in large Amish kindreds.	Aging	263 Amish individuals aged 80 years or older	NA	12q24.33	LOC100129252, NLRP9P	rs643473-?	0.40	9E-6				Affymetrix [630309]	N
1573	chr12	129511609	129511610	rs10773588	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	12q24.33	GLT1D1, TMEM132D	rs10773588-G	0.94	5E-6	(African)	1.6949153		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1573	chr12	129533846	129533847	rs73157566	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Retinal venular tortuosity	3,094 European ancestry individuals	1,413 European ancestry individuals	12q24.33	TMEM132D	rs73157566-A	0.04	3E-6		0.075	[0.046-0.104] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1573	chr12	129534762	129534763	rs117542098	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	12q24.33	TMEM132D	rs117542098-T	0.0069	3E-6		0.3789	[0.22-0.54] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1573	chr12	129534762	129534763	rs117542098	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	12q24.33	TMEM132D	rs117542098-T	0.0068	1E-6		0.3741	[0.22-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1573	chr12	129559420	129559421	rs73159540	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.33	TMEM132D	rs73159540-T	0.112	3E-12	(Transmembrane protein 132B, TMEM132B.8890.9.3)	0.27	[0.19-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1573	chr12	129561355	129561356	rs12369635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132B	5,350 Icelandic ancestry individuals	NA	12q24.33		rs12369635-T	0.09945	2E-12		0.210112	[0.15-0.27] unit decrease	Illumina [7506463] (imputed)	N
1573	chr12	129561355	129561356	rs12369635	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Schizophrenia (inflammation and infection response interaction)	460 Ashkenazi Jewish schizophrenia cases, 241  Ashkenazi Jewish controls	NA	12q24.33	TMEM132D, GLT1D1	rs12369635-?		8E-6	(anti-HSV1)			Affymetrix [516638]	N
1573	chr12	129614384	129614385	rs117605016	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	12q24.33	TMEM132D	rs117605016-C	0.01	1E-8	(EA)	0.7015	[0.47-0.94] unit increase	Illumina [~ 9000000] (imputed)	N
1574	chr12	129637347	129637348	rs12824981	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	Heart rate	455 African American individuals	NA	12q24.33	TMEM132D	rs12824981-T		9E-6		4.56	[NR] ms increase	Illumina [> 930000]	N
1574	chr12	129646571	129646572	rs12580240	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q24.33	NR	rs12580240-G	0.0139850911701364	2E-6	(IGP25)	0.895	[0.53-1.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1574	chr12	129646600	129646601	rs12580533	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	12q24.33	NR	rs12580533-C	0.014010396137832	8E-6	(IGP33)	0.8247	[0.46-1.19] unit increase	Illumina [~ 2500000] (imputed)	N
1574	chr12	129652166	129652167	rs12580745	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	12q24.33	NR	rs12580745-?	NR	5E-7		0.165	[0.1-0.23] unit increase	Illumina [~ 7800000] (imputed)	N
1574	chr12	129652390	129652391	rs12580490	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.33	GLT1D1	rs12580490-?	NR	9E-8	(pantothenic acid)	0.21705289	[0.14-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1574	chr12	129693529	129693530	rs11060202	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	12q24.33	NR	rs11060202-?	NR	4E-6		0.41	[0.32-0.52]	Illumina [539000] (imputed)	N
1575	chr12	129793721	129793722	rs7135809	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	12q24.33	NR	rs7135809-T		9E-6		0.1139	[0.064-0.164] SD units increase	NR [10700000] (imputed)	N
1575	chr12	129799506	129799507	rs184103837	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	12q24.33	NR	rs184103837-C	0.008253	7E-7		0.8233	[0.5-1.15] unit decrease	Illumina [10677593] (imputed)	N
1575	chr12	129815568	129815569	rs11060254	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	12q24.33	NR	rs11060254-G		2E-6		0.08	[0.047-0.113] SD units increase	NR [10700000] (imputed)	N
1575	chr12	129818245	129818246	rs1482292	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	12q24.33	NR	rs1482292-C	NR	2E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1575	chr12	129875669	129875670	rs144412883	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	12q24.33	TMEM132D	rs144412883-G	NR	4E-6		0.0999991	[0.058-0.142] unit decrease	Illumina [13520550] (imputed)	N
1575	chr12	129889218	129889219	rs111638979	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	12q24.33	TMEM132D	rs111638979-G	NR	2E-8		0.531	[0.35-0.72] unit increase	NR [11024754] (imputed)	N
1576	chr12	129899313	129899314	rs55685119	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Pallidum volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	12q24.33	NR	rs55685119-?	NR	7E-8	(right hemisphere)			Illumina [2711511] (imputed)	N
1576	chr12	129936759	129936760	rs4759570	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	12q24.33	TMEM132D	rs4759570-A		2E-6	(AA)	9.02	[1.31-62.00]	Affymetrix, Illumina [NR] (imputed)	N
1576	chr12	130013809	130013810	rs73155253	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	12q24.33	TMEM132D	rs73155253-T	0.7873	5E-7		0.053	[0.032-0.073] unit increase	Illumina [11434023] (imputed)	N
1576	chr12	130022702	130022703	rs2170820	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	12q24.33	TMEM132D	rs2170820-C		5E-6	(EA, factor score analysis)	0.063	[NR] unit decrease	Affymetrix [up to 730090]	N
1577	chr12	130030751	130030752	rs11060424	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.33	GLT1D1	rs11060424-?	NR	4E-6	(PC 36:3)	0.1751375	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1577	chr12	130085564	130085565	rs139574809	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	12q24.33	TMEM132D	rs139574809-A	0.059	3E-27	(Transmembrane protein 132D, TMEM132D.13416.8.3)	0.55	[0.45-0.65] unit increase	Affymetrix [10572788] (imputed)	N
1577	chr12	130091657	130091658	rs61943547	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132D	5,359 Icelandic ancestry individuals	NA	12q24.33		rs61943547-A	0.0663	9E-34		0.446561	[0.37-0.52] unit increase	Illumina [7506463] (imputed)	N
1577	chr12	130092228	130092229	rs61943549	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	12q24.33	TMEM132D	rs61943549-T	0.9484375	1E-18	(TMEM132D, 13416_8_3)	0.4863267	[0.38-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
1577	chr12	130097849	130097850	rs11060464	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	12q24.33	TMEM132D, LOC101927735, LOC100190940	rs11060464-?	NR	4E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
1577	chr12	130117148	130117149	rs79946301	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q24.33	intergenic	rs79946301-A	0.005	6E-6		7.81	[2.74-22.24]	Illumina [1556551]	N
1577	chr12	130117351	130117352	rs114606502	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	12q24.33	TMEM132D	rs114606502-C	0.0	8E-9	(African American)	2.32	[1.54-3.1] unit increase	Illumina [up to 13042663] (imputed)	N
1578	chr12	130157740	130157741	rs58107565	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	12q24.33	NR	rs58107565-G	NR	9E-6	(LME model)	0.47969	[0.27-0.69] unit decrease	NR [NR] (imputed)	N
1578	chr12	130199561	130199562	rs264480	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q24.33	TMEM132D	rs264480-T	0.003922	6E-7	(EA)			Illumina [4404269] (imputed)	N
1578	chr12	130230406	130230407	rs7979367	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	12q24.33	NR	rs7979367-C	0.402	2E-6		9.215	[NR] unit decrease	Illumina [527829]	N
1578	chr12	130230406	130230407	rs7979367	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	12q24.33	NR	rs7979367-C	0.402	6E-6	(Illicit drug use)			Illumina [527829]	N
1579	chr12	130387288	130387289	rs192256050	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	12q24.33		rs192256050-T	0.101	8E-7		1.452	[1.252-1.683]	Affymetrix [7975321] (imputed)	N
1579	chr12	130387288	130387289	rs192256050	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	12q24.33		rs192256050-T	0.101	4E-7		1.388	[1.22299999999999-1.577]	Affymetrix [7975321] (imputed)	N
1579	chr12	130410837	130410838	rs825885	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Full scale intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	12q24.33	NR	rs825885-A	NR	9E-6		2.08	[1.16-3] unit decrease	Illumina [2141747] (imputed)	N
1580	chr12	130431651	130431652	rs12423717	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	12q24.33	NR	rs12423717-?		3E-6				Illumina [892589]	N
1580	chr12	130466630	130466631	rs76582905	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	12q24.33	intergenic	rs76582905-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1580	chr12	130497471	130497472	rs1624802	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.33	TMEM132D	rs1624802-A	0.49	5E-7	(Ft4 )	0.02	[NR] ng/dL increase	Illumina [899892]	N
1580	chr12	130506799	130506800	rs186447829	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	12q24.33	NR	rs186447829-?	NR	7E-6		4.09	[3.13-5.34]	Illumina [539000] (imputed)	N
1580	chr12	130507901	130507902	rs7975381	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	12q24.33		rs7975381-T	0.11461	5E-6		0.047746	[0.027-0.068] unit decrease	Affymetrix [15580782] (imputed)	N
1580	chr12	130525866	130525867	rs76903431	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	12q24.33	LINC02418	rs76903431-A	0.042	1E-9		1.69	NR	Affymetrix, Illumina [4996193] (imputed)	N
1580	chr12	130536332	130536333	rs708339	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	12q24.33	NR	rs708339-?	NR	3E-6		0.0716	[0.042-0.101] unit increase	Illumina [~ 7800000] (imputed)	N
1580	chr12	130538801	130538802	rs1617565	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	12q24.33	NR	rs1617565-?		7E-6		1.41	[1.21-1.63]	Illumina [539473] (imputed)	N
1581	chr12	130562417	130562418	rs78472887	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	12q24.33	NR	rs78472887-C	0.133368	3E-48		0.066835	[0.058-0.076] unit decrease	NR [19129689] (imputed)	N
1581	chr12	130562417	130562418	rs78472887	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	12q24.33		rs78472887-G	0.14	8E-12		0.2	[0.14-0.26] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1581	chr12	130563219	130563220	rs112949019	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12q24.33	NR	rs112949019-A	NR	1E-9		0.0510754	NR unit decrease	NR [NR] (imputed)	N
1581	chr12	130563362	130563363	rs76972608	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	12q24.33	intergenic	rs76972608-A	NR	2E-12		0.146316	[0.11-0.19] unit decrease	Affymetrix [27512692] (imputed)	N
1581	chr12	130563362	130563363	rs76972608	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		12q24.33	NR	rs76972608-T	NR	5E-12		0.0629702	NR unit decrease	NR [NR] (imputed)	N
1581	chr12	130563362	130563363	rs76972608	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	12q24.33	TMEM132D, FZD10	rs76972608-?	NR	4E-8		1.1990408	[1.12-1.28]	Illumina [13436641] (imputed)	N
1581	chr12	130564146	130564147	rs4760044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	12q24.33		rs4760044-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1581	chr12	130565997	130565998	rs861162	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.33		rs861162-T	0.18	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr12	130565997	130565998	rs861162	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.33	NR	rs861162-T	0.1897	2E-9				NR [9056863] (imputed)	N
1581	chr12	130578129	130578130	rs7295050	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.33		rs7295050-G	0.28	7E-11		6.51	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr12	130578129	130578130	rs7295050	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	12q24.33		rs7295050-G	0.28	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
1581	chr12	130578129	130578130	rs7295050	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.33	NR	rs7295050-G	0.2792	1E-12				NR [9056863] (imputed)	N
1581	chr12	130630934	130630935	rs11060736	22780124	Lind PA	2012-07-11	Addict Biol	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	12q24.33	FZD10, intergenic, FLJ31485	rs11060736-T	0.941	4E-6		0.285	[0.16-0.41] unit decrease	Illumina [2373249] (imputed)	N
1581	chr12	130634862	130634863	rs1875119	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.33	NR	rs1875119-?	NR	1E-6				Affymetrix [NR]	N
1581	chr12	130638363	130638364	rs76721679	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FZD10-DT	rs76721679-?	NR	8E-9	(male)	1.79578	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1581	chr12	130642230	130642231	rs75751297	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	12q24.33	FLJ31485	rs75751297-A	NR	7E-7	(Perc15, All)	2.4	[1.46-3.34] unit increase	Illumina [7600000] (imputed)	N
1582	chr12	130700710	130700711	rs1106874	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	12q24.33		rs1106874-C	NR	3E-6		3.321	[1.94-4.7] unit increase	NR [534934]	N
1582	chr12	130745947	130745948	rs4759640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.33	Intergenic	rs4759640-T	0.7031	4E-16	(MTAG)	0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1582	chr12	130745947	130745948	rs4759640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.33	Intergenic	rs4759640-C	0.2969	4E-15		0.0168	[0.013-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1582	chr12	130745947	130745948	rs4759640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.33	Intergenic	rs4759640-T	0.7034	7E-13	(MTAG)	0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1582	chr12	130804333	130804334	rs12824058	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	12q24.33	PIWIL1	rs12824058-G	0.43	6E-11		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1583	chr12	130823656	130823657	rs28416520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	12q24.33		rs28416520-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1583	chr12	130844566	130844567	rs76425237	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (1 day post influenza vaccination)	298 individuals	NA	12q24.33	NR	rs76425237-?	NR	4E-8				NR [1665663]	N
1583	chr12	130868485	130868486	rs975144	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	12q24.33	NR	rs975144-C	0.156642	2E-6		1.1363636	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1583	chr12	130921663	130921664	rs2292664	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	12q24.33	RIMBP2	rs2292664-?	0.081	1E-8	(females)	5.828	[NR] unit decrease	Affymetrix [429783]	N
1584	chr12	130946778	130946779	rs1877976	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	12q24.33		rs1877976-C	0.64453	8E-6		0.031909	[0.018-0.046] unit decrease	Affymetrix [15580782] (imputed)	N
1584	chr12	130952208	130952209	rs6486542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	12q24.33	NR	rs6486542-C	0.570103	1E-11		0.0212154	[0.015-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1584	chr12	130952208	130952209	rs6486542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	12q24.33	NR	rs6486542-C	0.571159	3E-15		0.0158958	[0.012-0.02] unit increase	Affymetrix [16583148] (imputed)	N
1584	chr12	130952208	130952209	rs6486542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	12q24.33	NR	rs6486542-C	0.570571	3E-18		0.0261149	[0.02-0.032] unit increase	Affymetrix [16577424] (imputed)	N
1584	chr12	130968398	130968399	rs59068957	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	12q24.33	NR	rs59068957-?	NR	3E-7			[NR]	Illumina [5432814] (imputed)	N
1584	chr12	131022009	131022010	rs1464108	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	12q24.33	RIMBP2	rs1464108-?	0.32	8E-6		1.28	[NR]	Illumina [1847262] (imputed)	N
1584	chr12	131045129	131045130	rs7975553	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	12q24.33	RIMBP2	rs7975553-?	0.43	6E-6		1.2987013	[1.16-1.47]	Illumina [6220060] (imputed)	N
1585	chr12	131091965	131091966	rs10848158	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		12q24.33	NR	rs10848158-C	NR	6E-6		0.249954	[0.14-0.36] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1585	chr12	131097618	131097619	rs731868	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	12q24.33	STX2	rs731868-?	NR	3E-6	(phosphoenolpyruvic acid)	0.21781623	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1585	chr12	131157563	131157564	rs12308700	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.33	RIMBP2	rs12308700-?		1E-13				Affymetrix, Illumina [NR] (imputed)	N
1586	chr12	131226141	131226142	rs10848195	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	12q24.33	RIMBP2	rs10848195-G	NR	6E-6		0.083	[0.048-0.118] unit decrease	Illumina [NR] (imputed)	N
1586	chr12	131277270	131277271	rs10744481	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue-type plasminogen activator levels	21,758 European ancestry individuals	9,173 individuals	12q24.33		rs10744481-A	0.66	3E-8		0.0502	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1586	chr12	131287010	131287011	rs6486599	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q24.33	STX2	rs6486599-?	NR	4E-18	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1586	chr12	131287010	131287011	rs6486599	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q24.33	STX2	rs6486599-?	NR	1E-18				Affymetrix, Illumina [10537485] (imputed)	N
1586	chr12	131290179	131290180	rs4759787	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q24.33	STX2	rs4759787-A	0.37	8E-20		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1586	chr12	131290179	131290180	rs4759787	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	12q24.33	STX2	rs4759787-A	0.35	4E-18	(EA)	0.0227	[0.018-0.028] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1586	chr12	131291100	131291101	rs7301826	24578379	Huang J	2014-02-27	Arterioscler Thromb Vasc Biol	Genome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.	Plasma plasminogen activator levels	26,217 European ancestry individuals, 712 Orcadian individuals	4,487 European ancestry individuals	12q24.33	STX2	rs7301826-C	0.43	1E-9		0.027	[0.019-0.035] unit increase	Affymetrix, Illumina [2455857] (imputed)	N
1586	chr12	131311748	131311749	rs137928907	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	12q24.33	STX2	rs137928907-?	NR	2E-8	(African)			Illumina [4404269] (imputed)	N
1587	chr12	131338837	131338838	rs7976502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	12q24.33		rs7976502-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1587	chr12	131352561	131352562	rs7304057	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	12q24.33	intergenic	rs7304057-?	NR	4E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1587	chr12	131380472	131380473	rs2178077	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus foliaceus	65 Chinese ancestry cases, 844 Chinese ancestry controls	at least 49 Chinese ancestry cases, up to 996 Chinese ancestry controls	12q24.33	NR	rs2178077-A	NR	2E-9		3.03		Illumina [5546030] (imputed)	N
1587	chr12	131390753	131390754	rs7299940	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	12q24.33	intergenic	rs7299940-?	0.29	7E-6				Affymetrix [253903]	N
1587	chr12	131456448	131456449	rs11061269	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	12q24.33	GPR133	rs11061269-A	0.04	5E-6		0.0902	[0.052-0.129] unit decrease	Illumina [6380737] (imputed)	N
1587	chr12	131456448	131456449	rs11061269	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	12q24.33	GPR133	rs11061269-?	0.08	8E-10		3.7761	[2.49-5.74]	Illumina [859311]	N
1588	chr12	131515963	131515964	rs4759828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.33	NR	rs4759828-A	NR	2E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1588	chr12	131517520	131517521	rs145179238	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	12q24.33	NR	rs145179238-A	0.8943	7E-7		1.4445	[0.88-2.01] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1588	chr12	131525052	131525053	rs3847687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.33	NR	rs3847687-T	NR	1E-13		0.0185	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1588	chr12	131525052	131525053	rs3847687	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.33	GPR133	rs3847687-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1588	chr12	131563551	131563552	rs11061315	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	12q24.33	NR	rs11061315-?	NR	7E-6				Affymetrix [NR]	N
1588	chr12	131574484	131574485	rs1569020	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.33	GPR133	rs1569020-?		2E-6				Illumina [4322238] (imputed)	N
1588	chr12	131576190	131576191	rs1569019	19729412	Tonjes A	2009-09-03	Hum Mol Genet	Genetic variation in GPR133 is associated with height: genome wide association study in the self-contained population of Sorbs.	Height	929 Sorbian (founder/genetic isolate) individuals	5,758 European ancestry individuals	12q24.33	GPR133	rs1569019-?	NR	5E-8		0.95	[0.61-1.29] cm increase	Affymetrix [390619]	N
1588	chr12	131595519	131595520	rs10848286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	12q24.33	NR	rs10848286-C	NR	3E-9		0.0182	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1589	chr12	131596498	131596499	rs10848287	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	12q24.33	NR	rs10848287-T	0.305995	3E-8		0.0410169	[0.027-0.055] unit decrease	Affymetrix [17914406] (imputed)	N
1589	chr12	131606751	131606752	rs1211609	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	12q24.33	NR	rs1211609-G	NR	6E-6		0.1218	[0.069-0.174] SD units increase	NR [10700000] (imputed)	N
1589	chr12	131608475	131608476	rs1725788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	12q24.33	NR	rs1725788-G	0.23773100000000003	3E-9		0.00550669	[0.0036-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
1589	chr12	131608475	131608476	rs1725788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	12q24.33	NR	rs1725788-G	0.23773100000000003	6E-8		0.0055267	[0.0034-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
1589	chr12	131617416	131617417	rs7957882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.33		rs7957882-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1589	chr12	131619268	131619269	rs4759545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	12q24.33		rs4759545-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1589	chr12	131621761	131621762	rs885389	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.33	ADGRD1	rs885389-A	0.3328	6E-37		0.0254	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
1589	chr12	131621761	131621762	rs885389	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	12q24.33	GPR133	rs885389-A	0.30	4E-8		0.17	[0.11-0.23] unit decrease	Illumina [~ 318327]	N
1589	chr12	131621996	131621997	rs1880842	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	12q24.33	ADGRD1	rs1880842-A	0.279525	3E-12		0.0144124	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1589	chr12	131621996	131621997	rs1880842	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	12q24.33		rs1880842-?	NR	2E-17		0.0188661	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1589	chr12	131638852	131638853	rs7485210	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	12q24.33	LOC116437	rs7485210-?	NR	3E-6	(% Change in score)	0.14	[NR] unit increase	Illumina [~ 7000000] (imputed)	N
1589	chr12	131700621	131700622	rs7300117	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	12q24.33	NA	rs7300117-?	NR	4E-6	(mvLMM)			Affymetrix [587358]	N
1589	chr12	131700621	131700622	rs7300117	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels	173 European ancestry families	NA	12q24.33	intergenic	rs7300117-?	NR	6E-9				Affymetrix [715787]	N
1590	chr12	131853004	131853005	rs77211830	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	12q24.33	NR	rs77211830-A	NR	1E-6		3.34		Illumina [NR] (imputed)	N
1591	chr12	131862902	131862903	rs7965445	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	12q24.33	LOC338797	rs7965445-A	0.098	2E-6	(EA)	1.3	[0.99-1.72]	Affymetrix [up to 2366858] (imputed)	N
1591	chr12	131894081	131894082	rs111801277	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.33	NR	rs111801277-T	0.02265	2E-8	(KRT18)	2.137	NR unit increase	Illumina [1671387] (imputed)	N
1591	chr12	131912341	131912342	rs112170540	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	12q24.33	LOC101929974	rs112170540-?		2E-6				NR [7405822] (imputed)	N
1591	chr12	131939919	131939920	rs10466868	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	12q24.33	GPR133	rs10466868-?	0.12	1E-6	(Erythropoeitin)			Illumina [496032]	N
1592	chr12	132014205	132014206	rs10773920	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	12q24.33	intergenic	rs10773920-C	0.477	8E-6	(WC )	0.03	[NR] cm increase	Illumina [899892]	N
1592	chr12	132032212	132032213	rs12370900	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	12q24.33		rs12370900-T	0.6219	4E-6		0.042	[0.024-0.06] unit increase	Illumina [7778465] (imputed)	N
1592	chr12	132046336	132046337	rs145070280	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	12q24.33	RP11-292I17.1	rs145070280-T	0.0257	3E-6		0.1131	[0.066-0.161] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1592	chr12	132057828	132057829	rs7963314	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	12q24.33	SFSWAP	rs7963314-?	NR	3E-6	(females)	1.4279574		Affymetrix, Illumina [2928658] (imputed)	N
1592	chr12	132078059	132078060	rs10082903	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels x sex interaction in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	12q24.33	LOC105370084	rs10082903-?	0.41	9E-6				Illumina [628376]	N
1592	chr12	132085195	132085196	rs7315621	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	12q24.33	AC117500.2	rs7315621-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1592	chr12	132088400	132088401	rs12813347	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	12q24.33	NR	rs12813347-?	NR	1E-8				Illumina [7760689] (imputed)	N
1593	chr12	132240658	132240659	rs1107871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	12q24.33	Intergenic	rs1107871-A	0.55	1E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1593	chr12	132240658	132240659	rs1107871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	12q24.33		rs1107871-A	0.5506	4E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1593	chr12	132240658	132240659	rs1107871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	12q24.33	Intergenic	rs1107871-A	0.5506	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1594	chr12	132266448	132266449	rs113721561	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	12q24.33	SFSWAP	rs113721561-?	0.017000000000000015	3E-6		1.4194471	[1.18-1.7]	Affymetrix, Illumina [7701827] (imputed)	N
1594	chr12	132275299	132275300	rs6598156	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	12q24.33		rs6598156-A	0.771572214	4E-8		0.137802	[0.089-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
1594	chr12	132275299	132275300	rs6598156	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting monounsaturated fatty acids (16:1, 18:1)	4,734 individuals	NA	12q24.33		rs6598156-A	0.771896368	1E-8		0.143438	[0.094-0.193] mmol/l increase	Illumina [7701709] (imputed)	N
1594	chr12	132275764	132275765	rs11246807	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale)	4,057 Finnish ancestry individuals	NA	12q24.33	MMP17	rs11246807-?		3E-6				Illumina [~ 9600000] (imputed)	N
1594	chr12	132325238	132325239	rs6598163	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	12q24.33	MMP17	rs6598163-G	0.48	5E-7		1.15	[1.09-1.21]	Illumina [1246388] (imputed)	N
1594	chr12	132331531	132331532	rs11246851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.33	Intergenic	rs11246851-A	0.5707	2E-8	(MTAG)	0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1594	chr12	132335033	132335034	rs10902457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	12q24.33		rs10902457-T	NR	2E-8		0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1594	chr12	132335476	132335477	rs7975920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	12q24.33		rs7975920-G	NR	1E-9		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1594	chr12	132336798	132336799	rs59736952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	12q24.33		rs59736952-C	0.308509	9E-10		0.0234842	[0.016-0.031] unit increase	Illumina [13476165] (imputed)	N
1595	chr12	132399003	132399004	rs74749868	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.33	NR	rs74749868-G	0.01045	5E-9	(PKM)	0.5436	NR unit increase	Illumina [1671387] (imputed)	N
1595	chr12	132399003	132399004	rs74749868	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	12q24.33	NR	rs74749868-G	0.01045	2E-8	(ABCB6)	0.04702	NR unit increase	Illumina [1671387] (imputed)	N
1595	chr12	132405043	132405044	rs78661442	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	12q24.33	NR	rs78661442-?	NR	9E-6		4.433	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1595	chr12	132410244	132410245	rs10902475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q24.33		rs10902475-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1595	chr12	132413597	132413598	rs78255464	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	12q24.33	NA	rs78255464-A	0.8328	1E-6		0.0124	[0.0073-0.0175] unit increase	NR [~ 27400000] (imputed)	N
1595	chr12	132419532	132419533	rs4965006	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	12q24.33	Intergenic	rs4965006-?	NR	4E-6		1.59605	[1.29704-1.96399]	Illumina [~ 5900000] (imputed)	N
1595	chr12	132421278	132421279	rs12312585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	12q24.33		rs12312585-A	0.108692	4E-8		0.0275381	[0.018-0.037] unit decrease	Illumina [13479135] (imputed)	N
1595	chr12	132423917	132423918	rs73162967	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PUS1	rs73162967-?	NR	4E-8	(female)	0.662056	[NR] unit increase	Affymetrix [NR] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.03613	2E-34		0.075340815	[0.063-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.036122	7E-10		0.037789397	[0.026-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.036139	3E-19		0.055608798	[0.043-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.0361359999999999	7E-19		0.05535625	[0.043-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.0361359999999999	2E-15		0.0508753	[0.04-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.33	EP400	rs57565032-T	0.036135	4E-10		0.03831481	[0.026-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs57565032-G	0.956019	6E-36				Affymetrix, Illumina [22063850] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	12q24.33	NR	rs57565032-G	0.963681	5E-38		0.069408	[0.059-0.08] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	12q24.33	NR	rs57565032-T	0.036942	1E-12		0.037261	[0.027-0.048] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs57565032-T	0.0536831	6E-25				Affymetrix, Illumina [24246363] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	12q24.33	NR	rs57565032-T	0.036958	1E-23		0.051617	[0.042-0.062] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs57565032-T	0.0543168	4E-13				Affymetrix, Illumina [20825802] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	12q24.33	NR	rs57565032-T	0.036317	7E-13		0.038415	[0.028-0.049] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.33		rs57565032-?	NR	4E-33				NR [~ 8900000] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.33		rs57565032-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.33		rs57565032-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1595	chr12	132434390	132434391	rs57565032	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	12q24.33	EP400	rs57565032-T	0.0272	4E-13		0.08111113	[0.059-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1596	chr12	132533736	132533737	rs12318272	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	12q24.33	EP400	rs12318272-G	NR	1E-13		0.0914211	[0.066-0.117] unit decrease	Affymetrix [16832071] (imputed)	N
1596	chr12	132544642	132544643	rs11830241	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.33	NR	rs11830241-C	0.9008	1E-8		0.0411	[0.027-0.055] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1596	chr12	132544693	132544694	rs11830243	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.33	NR	rs11830243-C	0.887	2E-9		0.0442	[0.03-0.059] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1596	chr12	132574030	132574031	rs57296505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.33	EP400NL	rs57296505-A	0.128964	1E-10		0.021338569	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1596	chr12	132584185	132584186	rs6598200	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	12q24.33	AC138466.5	rs6598200-A	0.1586	8E-14		0.0193	[0.014-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1596	chr12	132592521	132592522	rs12426424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.33	EP400NL	rs12426424-C	0.128649	6E-10		0.0203987	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1596	chr12	132601595	132601596	rs12422267	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	12q24.33	EP400NL	rs12422267-G	0.095	2E-6		0.17	[0.11-0.23] unit increase	Illumina [2316178] (imputed)	N
1596	chr12	132604386	132604387	rs138712481	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Airflow obstruction	854 Hispanic cases, 9,549 Hispanic controls	European ancestry individuals (see Wilk et al 2012)	12q24.33	EP400NL	rs138712481-G	0.978	2E-8	(Hispanic)	7.112135	[6.82-7.40]	Illumina [up to 27887661] (imputed)	N
1596	chr12	132609139	132609140	rs7976530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.33		rs7976530-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1596	chr12	132623388	132623389	rs12424892	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.33	DDX51	rs12424892-C	0.153	2E-6		0.0457	[0.027-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1596	chr12	132628280	132628281	rs78871841	26887379	Tang W	2016-02-18	Mol Neurobiol	Exome-Wide Association Study Identified New Risk Loci for Hirschsprung's Disease.	Hirschsprung disease	167 East Asian ancestry cases, 900 East Asian ancestry controls	NA	12q24.33	NOC4L	rs78871841-A	0.0507	4E-6				Illumina [Exome array]	N
1597	chr12	132663166	132663167	rs75407077	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	12q24.33	RP13-977J11.2	rs75407077-A	0.0495	2E-7		0.0863	[0.054-0.119] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1597	chr12	132666123	132666124	rs3935545	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	12q24.33	DDX51, GALNT9, NOC4L	rs3935545-?	NR	5E-6		0.0593	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1597	chr12	132666123	132666124	rs3935545	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	12q24.33	DDX51, GALNT9, NOC4L	rs3935545-?	NR	3E-6		1.6929	NR	Affymetrix, Illumina [7062950] (imputed)	N
1597	chr12	132675789	132675790	rs73486316	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	12q24.33	LOC100996246	rs73486316-A	0.0104045511480401	2E-6		0.012784	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1597	chr12	132701054	132701055	rs11834862	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q24.33	GALNT9	rs11834862-A	0.2065	2E-6	(EA)			Illumina [4404269] (imputed)	N
1597	chr12	132701183	132701184	rs11247009	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	12q24.33	SFSWAP, MMP17, ULK1, PUS1, EP400, SNORA49, EP400NL, DDX51, NOC4L, LOC100130238, FBRSL1, LRCOL1, P2RX2, POLE	rs11247009-A	0.182990160723882	6E-9		0.024811804	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1597	chr12	132701183	132701184	rs11247009	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.33	GALNT9	rs11247009-A	0.184	3E-6	(EA)	0.025	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1597	chr12	132701183	132701184	rs11247009	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.33	GALNT9	rs11247009-A	0.184	3E-6		0.024	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1597	chr12	132701183	132701184	rs11247009	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	12q24.33	GALNT9	rs11247009-A	0.182	4E-6	(EA, women)	0.03	[0.017-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1597	chr12	132703217	132703218	rs7306456	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	12q24.33	GALNT9	rs7306456-G	0.3776	6E-7				Illumina [4404269] (imputed)	N
1598	chr12	132824261	132824262	rs538064696	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GALNT9	rs538064696-?	NR	5E-9	(female)	1.885	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1599	chr12	133018681	133018682	rs10870468	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults		LOC101928629	rs10870468-?	NR	1E-6		0.0091	[0.0054-0.0128] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1599	chr12	133019963	133019964	rs12827428	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		POLE	rs12827428-?	NR	5E-6	(creatinine)	0.46655247	[0.27-0.67] unit increase	Affymetrix [at least 2500000] (imputed)	N
1599	chr12	133036961	133036962	rs74309700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA		NR	rs74309700-C	NR	4E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1600	chr12	133040182	133040188	rs200521476	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	12q24.33	FBRSL1	rs200521476-G	0.812	6E-9		0.875	[0.83-0.92]	Illumina [11270530] (imputed)	N
1600	chr12	133041617	133041618	rs10747083	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	12q24.33	P2RX2	rs10747083-A	0.66086	4E-6		0.014637	[0.0084-0.0209] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1600	chr12	133041617	133041618	rs10747083	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	12q24.33	P2RX2	rs10747083-A	0.66086	5E-11		0.014758	[0.01-0.019] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1600	chr12	133047544	133047545	rs142425959	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	12q24.33	NR	rs142425959-C		9E-6		0.2059	[0.11-0.3] SD units decrease	NR [10700000] (imputed)	N
1600	chr12	133047851	133047860	rs140408064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	12q24.33		rs140408064-G	NR	4E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1600	chr12	133047978	133047979	rs34980052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	12q24.33		rs34980052-G	NR	1E-22		0.0235	[0.019-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1600	chr12	133047978	133047979	rs34980052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	12q24.33		rs34980052-G	0.141114	4E-8		0.0315289	[0.02-0.043] unit increase	Illumina [13476266] (imputed)	N
1600	chr12	133047978	133047979	rs34980052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	12q24.33		rs34980052-G	0.140964	1E-8		0.0329811	[0.022-0.044] unit increase	Illumina [13476299] (imputed)	N
1600	chr12	133047978	133047979	rs34980052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs34980052-G	0.269049	3E-19				Affymetrix, Illumina [20825802] (imputed)	N
1600	chr12	133048599	133048600	rs75588192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.33		rs75588192-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1600	chr12	133051209	133051210	rs112683685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	12q24.33		rs112683685-C	NR	1E-21		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1600	chr12	133051209	133051210	rs112683685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	12q24.33	MUC8	rs112683685-C	0.281026	2E-18		0.02143976	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133051209	133051210	rs112683685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs112683685-T	0.719989	7E-17				Affymetrix, Illumina [17210439] (imputed)	N
1600	chr12	133051209	133051210	rs112683685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	12q24.33	NR	rs112683685-T	0.718876	2E-19		0.019061	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1600	chr12	133054608	133054609	rs10870546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	12q24.33		rs10870546-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1600	chr12	133057962	133057963	rs4296106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.33		rs4296106-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1600	chr12	133060065	133060076	rs68087547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.33		rs68087547-A	0.288563	1E-12		0.017941827	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133060065	133060076	rs68087547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.33		rs68087547-A	0.288474	4E-13		0.0209946	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133060065	133060076	rs68087547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.33		rs68087547-A	0.288477	1E-9		0.0153682185	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133060982	133060983	rs4883580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.33		rs4883580-T	0.9042406	8E-12		0.02652491	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133061080	133061081	rs61951158	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Ventral diencephalon volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	12q24.33	NR	rs61951158-?		5E-6				Illumina [4322238] (imputed)	N
1600	chr12	133063767	133063768	rs11610045	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	12q24.33	FBRSL1	rs11610045-A	0.5009	3E-13		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1600	chr12	133063767	133063768	rs11610045	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	12q24.33	FBRSL1	rs11610045-A	0.4896	2E-10		0.0601	[0.042-0.079] unit increase	NR [7784415] (imputed)	N
1600	chr12	133067472	133067473	rs28435470	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	12q24.33		rs28435470-?	NR	3E-8		0.0118696	[0.0077-0.0161] unit increase	NR [6912294] (imputed)	N
1600	chr12	133067988	133067989	rs7295014	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	12q24.33	NR	rs7295014-G	NR	1E-14		1.055	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1600	chr12	133067988	133067989	rs7295014	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	12q24.33	FBRSL1	rs7295014-G	NR	6E-8		1.12	[NR]	Illumina [20370935] (imputed)	N
1600	chr12	133067988	133067989	rs7295014	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q24.33	FBRSL1	rs7295014-G	0.35	1E-9		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
1600	chr12	133069697	133069698	rs12811407	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	12q24.33	FBRSL1	rs12811407-A	0.3305	2E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1600	chr12	133069893	133069894	rs12423664	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	12q24.33	NR	rs12423664-A	0.14	3E-17		0.0228	[0.017-0.028] unit increase	NR [NR]	N
1600	chr12	133069893	133069894	rs12423664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	12q24.33		rs12423664-A	0.1444	8E-11		0.198536	[0.14-0.26] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1600	chr12	133069893	133069894	rs12423664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	12q24.33		rs12423664-A	0.1362	3E-10		6.30461	z score increase	Affymetrix, Illumina [246710] (imputed)	N
1600	chr12	133069893	133069894	rs12423664	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	12q24.33		rs12423664-A	0.1404	8E-9		0.1042451	[0.067-0.142] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
1600	chr12	133069893	133069894	rs12423664	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	12q24.33	FBRSL1	rs12423664-A	0.1515	2E-13		0.041927	[0.031-0.053] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1600	chr12	133069893	133069894	rs12423664	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and triglyceride levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	12q24.33	FBRSL1	rs12423664-A	0.13	1E-8				NR [NR]	N
1600	chr12	133069893	133069894	rs12423664	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	12q24.33	NR	rs12423664-?	NR	1E-6				NR [1800000]	N
1600	chr12	133070293	133070294	rs11614914	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.33	NR	rs11614914-C	0.6746	5E-15		0.0389	[0.029-0.049] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1600	chr12	133070293	133070294	rs11614914	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.33	NR	rs11614914-C	0.7033	3E-19		0.0394	[0.031-0.048] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1600	chr12	133076438	133076439	rs61952071	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	12q24.33		rs61952071-C	0.687	2E-15		0.09	[-0.12--0.07] % decrease	Affymetrix [NR] (imputed)	N
1600	chr12	133076438	133076439	rs61952071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.33		rs61952071-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1600	chr12	133080448	133080449	rs36098511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	12q24.33		rs36098511-T	NR	1E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1600	chr12	133081894	133081895	rs11610659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.33	FBRSL1	rs11610659-T	0.9056066	7E-11		0.0289464	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133083710	133083711	rs4883573	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FBRSL1	rs4883573-?	NR	4E-8		0.998877	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1600	chr12	133086887	133086888	rs117206641	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	12q24.33	FBRSL1	rs117206641-T	0.108	2E-6		1.22	[1.14-1.3]	Affymetrix, Illumina [8000000] (imputed)	N
1600	chr12	133086887	133086888	rs117206641	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	12q24.33	FBRSL1	rs117206641-C	0.8892	3E-10		0.3154	[0.22-0.41] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1600	chr12	133088164	133088165	rs3751297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	12q24.33		rs3751297-A	NR	1E-10		0.052	[0.036-0.068] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1600	chr12	133090790	133090791	rs3812828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs3812828-G	0.723308	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
1600	chr12	133091819	133091820	rs190397265	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q24.33	NR	rs190397265-?	NR	1E-5		1.15492	[0.64-1.67] unit increase	NR [13958389] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	12q24.33		rs74397112-T	NR	5E-15		0.0227	[0.017-0.028] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	12q24.33	NR	rs74397112-T	NR	6E-14		0.0258	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	12q24.33	NR	rs74397112-T	NR	9E-12		0.0234	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	12q24.33	FBRSL1	rs74397112-T	0.1479	1E-14		0.0427	[0.032-0.053] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.33	NR	rs74397112-T	0.154	9E-6	(women)	0.0362	[0.02-0.052] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1600	chr12	133094110	133094111	rs74397112	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	12q24.33	NR	rs74397112-T	0.1519	5E-8	(men)	0.053	[0.034-0.072] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1600	chr12	133099569	133099570	rs74971075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	12q24.33		rs74971075-A	NR	1E-9		0.0303	[0.021-0.04] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1600	chr12	133099569	133099570	rs74971075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	12q24.33		rs74971075-A	0.108846	3E-8		0.0314495	[0.02-0.043] unit increase	Illumina [13477770] (imputed)	N
1600	chr12	133104734	133104735	rs4883565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	12q24.33		rs4883565-C	NR	4E-11		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1600	chr12	133104734	133104735	rs4883565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	12q24.33		rs4883565-C	NR	4E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1600	chr12	133104734	133104735	rs4883565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	12q24.33		rs4883565-?	NR	9E-25				NR [~ 8900000] (imputed)	N
1600	chr12	133105851	133105852	rs4242906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs4242906-G	0.30278	9E-29				Affymetrix, Illumina [24332387] (imputed)	N
1600	chr12	133105851	133105852	rs4242906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	12q24.33	NR	rs4242906-G	0.230094	1E-15		0.018374	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1600	chr12	133105851	133105852	rs4242906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	12q24.33	NR	rs4242906-G	0.298692	5E-14				Affymetrix, Illumina [24558453] (imputed)	N
1600	chr12	133105851	133105852	rs4242906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	12q24.33	NR	rs4242906-G	0.230154	2E-14		0.017642	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1600	chr12	133112394	133112396	rs34390795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	12q24.33		rs34390795-C	NR	4E-18		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1600	chr12	133112394	133112396	rs34390795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	12q24.33	FBRSL1	rs34390795-C	0.229914	3E-24		0.026750876	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133112394	133112396	rs34390795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	12q24.33	FBRSL1	rs34390795-C	0.229913	4E-15		0.02076366	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133112394	133112396	rs34390795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	12q24.33	FBRSL1	rs34390795-C	0.229936	1E-13		0.019635387	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1600	chr12	133112394	133112396	rs34390795	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	12q24.33	FBRSL1	rs34390795-C	0.2307	6E-14		0.03193459	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1600	chr12	133117488	133117489	rs10870464	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	12q24.33	NR	rs10870464-C		6E-6				Illumina [458525]	N
1600	chr12	133121896	133121897	rs4883556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.33	Intergenic	rs4883556-T	0.5279	1E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1600	chr12	133124752	133124753	rs79009737	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	12q24.33	FBRSL1	rs79009737-G	0.858319	8E-10		0.0173699	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1600	chr12	133124752	133124753	rs79009737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	12q24.33		rs79009737-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1600	chr12	133140360	133140361	rs111599055	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	12q24.33	Intergenic	rs111599055-C	0.69	1E-8		1.13	[1.08-1.18]	Illumina [20370935] (imputed)	N
1600	chr12	133140360	133140361	rs111599055	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	12q24.33	NR	rs111599055-C	0.69	8E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1600	chr12	133140852	133140853	rs12826964	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	12q24.33	FBRSL1	rs12826964-?	NR	5E-9		0.0149	[0.01-0.019] unit increase	Affymetrix [5701386] (imputed)	N
1600	chr12	133142117	133142118	rs5023078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	12q24.33		rs5023078-T	0.4687	2E-9		0.0247311	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1600	chr12	133143326	133143327	rs549230195	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	12q24.33	NR	rs549230195-?	NR	2E-6		0.0079764	[0.0047-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1600	chr12	133150209	133150210	rs6560886	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	12q24.33	FBRSL1	rs6560886-C	0.788	1E-8		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
1600	chr12	133154265	133154266	rs11146949	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.33	FBRSL1	rs11146949-?	NR	2E-9		0.0284436	[0.019-0.038] unit decrease	Illumina [27896057] (imputed)	N
1600	chr12	133155906	133155907	rs11146953	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	12q24.33		rs11146953-?	NR	9E-6		1.03176	[1.02-1.05]	NR [688737]	N
1600	chr12	133158548	133158549	rs145991281	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FBRSL1	rs145991281-?	NR	8E-12	(male)	5.33597	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1601	chr12	133174856	133174859	rs563813749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	12q24.33		rs563813749-C	NR	3E-8		0.0312	[0.02-0.042] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1601	chr12	133226830	133226831	rs5744897	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	12q24.33	POLE	rs5744897-C	0.9	4E-6		0.087	[0.05-0.124] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1601	chr12	133262000	133262001	rs11147005	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	12q24.33	NR	rs11147005-C	0.324026	7E-6		0.062	[0.035-0.089] unit decrease	NR [9260588] (imputed)	N
1601	chr12	133265741	133265742	rs543678598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	12q24.33	RP13-672B3.2, PXMP2	rs543678598-A	0.048044	5E-12		0.03689502	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1601	chr12	133293140	133293140	rs201014064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.33	PXMP2, PGAM5	rs201014064-TG	0.043728	7E-13		0.039374646	[0.029-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1601	chr12	133296608	133296609	rs7486179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	12q24.33	PXMP2, PGAM5	rs7486179-C	0.017357	3E-11		0.057231385	[0.04-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1601	chr12	133296608	133296609	rs7486179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	12q24.33	PXMP2, PGAM5	rs7486179-C	0.017327	2E-10		0.055436697	[0.038-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1602	chr12	133301499	133301500	rs35221880	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		12q24.33	ANKLE2	rs35221880-T	0.268227	4E-8		0.00857287	[0.0055-0.0116] unit increase	Affymetrix [12370749]	N
1602	chr12	133309425	133309426	rs544978137	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	12q24.33	NR	rs544978137-?	NR	6E-8		1.6992	[1.08-2.31] unit increase	NR [13958389] (imputed)	N
1602	chr12	133313236	133313237	rs7138235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	12q24.33		rs7138235-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1602	chr12	133317127	133317128	rs117646359	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.33		rs117646359-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1602	chr12	133318405	133318406	rs11147040	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	12q24.33		rs11147040-?	NR	8E-6		0.12819888	[0.072-0.184] unit increase	Illumina [9939936] (imputed)	N
1602	chr12	133320135	133320136	rs118160033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	12q24.33	ANKLE2	rs118160033-A	0.0454599999999999	4E-10		0.034173932	[0.023-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1602	chr12	133341611	133341612	rs145828280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	12q24.33		rs145828280-T	NR	3E-8		0.0348	[0.022-0.047] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1602	chr12	133345808	133345809	rs12282	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	12q24.33	ANKLE2, GOLGA3	rs12282-?		3E-7	(Hispanic)			Illumina [NR]	N
1602	chr12	133355491	133355491	rs58841336	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	12q24.33	GOLGA3	rs58841336-G	0.7494	2E-6		0.0369	[0.022-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1602	chr12	133361341	133361344	rs199559944	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q24.33	NR	rs199559944-?	NR	4E-6		0.1205	[0.069-0.172] unit decrease	Illumina [11133794] (imputed)	N
1602	chr12	133362169	133362170	rs74531549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	12q24.33	Intergenic	rs74531549-A	0.8672	2E-10		0.0182	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1602	chr12	133365184	133365185	rs55806229	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q24.33	NR	rs55806229-T	NR	5E-6	(male)	0.1682	[0.096-0.241] unit decrease	Illumina [11133794] (imputed)	N
1602	chr12	133371222	133371224	rs55825300	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	12q24.33	NR	rs55825300-?	NR	3E-6	(male)	0.1738	[0.1-0.25] unit decrease	Illumina [11133794] (imputed)	N
1602	chr12	133374904	133374905	rs77330849	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	12q24.33	Intergenic	rs77330849-T	0.1313	5E-10	(MTAG)	0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1602	chr12	133376539	133376540	rs111696067	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	12q24.33	VTI1A	rs111696067-A	0.59	4E-8		1.1904762	[1.12-1.27]	Illumina [at least 8427548] (imputed)	N
1602	chr12	133376539	133376540	rs111696067	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	12q24.33	VTl1A	rs111696067-A	0.59	4E-6		1.1235955	[1.08-1.20]	Illumina [at least 8427548] (imputed)	N
1602	chr12	133380789	133380790	rs11611651	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	12q24.33	GOLGA3	rs11611651-A		1E-8		1.036	[NR]	Affymetrix [up to 79000000] (imputed)	N
1602	chr12	133380789	133380790	rs11611651	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	12q24.33	NR	rs11611651-A	0.0868	9E-12		0.0131882	[0.0094-0.017] unit increase	NR [9732723] (imputed)	N
1602	chr12	133380789	133380790	rs11611651	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	12q24.33	NR	rs11611651-A	0.0868	2E-9		0.027114276	[0.018-0.036] unit increase	NR [~ 10000000] (imputed)	N
1602	chr12	133391021	133391022	rs11836108	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	12q24.33	NA	rs11836108-A	0.296	8E-10		0.0113	[0.0078-0.0148] unit increase	NR [~ 27400000] (imputed)	N
1602	chr12	133393322	133393323	rs2291256	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	12q24.33	CHFR	rs2291256-T	0.0914	3E-9		0.02076341	[0.014-0.028] unit increase	Affymetrix [11514654] (imputed)	N
1602	chr12	133395037	133395038	rs78719460	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	12q24.33	NR	rs78719460-A	0.3108	3E-9		0.015897527	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1602	chr12	133395037	133395038	rs78719460	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate variance	341,584 European ancestry individuals	NA	12q24.33	GOLGA3	rs78719460-?	NR	2E-9				NR [5554549] (imputed)	N
1602	chr12	133395037	133395038	rs78719460	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate	341,584 European ancestry individuals	NA	12q24.33	GOLGA3	rs78719460-?	NR	2E-12				NR [5554549] (imputed)	N
1602	chr12	133403066	133403067	rs11610148	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	12q24.33		rs11610148-G	0.865	3E-9		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1602	chr12	133409583	133409584	rs1564648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	12q24.33		rs1564648-A	NR	3E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1602	chr12	133414053	133414054	rs6560906	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	12q24.33	NR	rs6560906-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1602	chr12	133417801	133417802	rs3741489	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	12q24.33	CHFR	rs3741489-C	0.005	2E-6	(3MSE)	13.9397	[8.26-19.61] unit decrease	Affymetrix [> 371951] (imputed)	N
1602	chr12	133419837	133419838	rs11613325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	12q24.33		rs11613325-G	0.151341	5E-12		0.0192977	[0.014-0.025] unit increase	Illumina [13479295] (imputed)	N
1602	chr12	133419837	133419838	rs11613325	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	12q24.33	CHFR	rs11613325-?	NR	5E-11		0.026094638	[0.018-0.034] unit increase	Illumina [27896057] (imputed)	N
1603	chr12	133441377	133441378	rs4303268	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,254 European ancestry individuals	NA	12q24.33	CHFR	rs4303268-G	0.892	4E-6				NR [2411114] (imputed)	N
1603	chr12	133441377	133441378	rs4303268	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (1df test)	6,254 European ancestry individuals	NA	12q24.33	CHFR	rs4303268-G	0.892	8E-7		1.43	[0.86-2] unit increase	NR [2411114] (imputed)	N
1603	chr12	133448390	133448391	rs77936594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	12q24.33		rs77936594-A	NR	1E-14		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1603	chr12	133448390	133448391	rs77936594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	12q24.33		rs77936594-A	NR	1E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1603	chr12	133451276	133451277	rs80032242	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	12q24.33	CHFR	rs80032242-A	0.137	4E-8		0.0183	[0.012-0.025] unit increase	Illumina [~ 250000] (imputed)	N
1603	chr12	133458174	133458175	rs34287227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	12q24.33		rs34287227-T	NR	8E-21		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1603	chr12	133458174	133458175	rs34287227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	12q24.33		rs34287227-?	NR	9E-18				NR [~ 8900000] (imputed)	N
1603	chr12	133487773	133487774	rs77927866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	12q24.33		rs77927866-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1603	chr12	133496959	133496960	rs7980504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	12q24.33	CHFR	rs7980504-A	0.39412	7E-12		0.0127519	[0.0084-0.0171] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr12	133526411	133526412	rs4758919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	12q24.33	CHFR, ZNF605	rs4758919-C	0.495772	6E-11		0.015925346	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr12	133527365	133527366	rs867831598	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	12q24.33		rs867831598-A	0.0022	4E-8		0.6029	[0.39-0.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1604	chr12	133628902	133628903	rs905227	29934777	Witten A	2018-06-22	J Mol Med (Berl)	Targeted resequencing of a locus for heparin-induced thrombocytopenia on chromosome 5 identified in a genome-wide association study.	Heparin-induced thrombocytopenia	96 European ancestry cases, 96 European ancestry heparin-exposed controls	86 European ancestry cases, 86 European ancestry heparin-exposed controls	12q24.33	NR	rs905227-?	0.56	9E-6		2.0	[1.43-2.50]	Illumina [~ 351507]	N
1604	chr12	133684320	133684321	rs905224	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	12q24.33	ANKLE2, GOLGA3, CHFR, ZNF605, ZNF140, ZNF891, ZNF10, ZNF268, ANHX	rs905224-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	12q24.33		rs11147235-C	0.17	4E-15		7.86	z score increase	Affymetrix [9061022] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	12q24.33		rs11147235-C	0.17	5E-14		7.54	z score increase	Affymetrix [9061022] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	12q24.33	NR	rs11147235-C	0.1893	2E-11				NR [9056863] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	12q24.33	NR	rs11147235-C	0.1893	3E-9				NR [9056863] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 30)	19,670 European ancestry individuals	NA	12q24.33		rs11147235-?	NR	3E-10				NR [9705931] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	12q24.33	NR	rs11147235-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1604	chr12	133688706	133688707	rs11147235	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	12q24.33	ZNF140, ZNF891	rs11147235-T	0.8134	4E-8		0.0977	[0.062-0.133] unit increase	Affymetrix [~ 11900000] (imputed)	N
1605	chr12	133730499	133730500	rs7970687	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	12q24.33	NR	rs7970687-C	0.4978	3E-11		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1605	chr12	133766121	133766122	rs12828318	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	12q24.33	NR	rs12828318-A	0.82	3E-14		0.018	[0.013-0.023] unit increase	Affymetrix [2446094] (imputed)	N
1605	chr12	133766121	133766122	rs12828318	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	12q24.33	NR	rs12828318-A	0.82	5E-8				Affymetrix [2446094] (imputed)	N
1605	chr12	133777465	133777466	rs12305809	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	12q24.33	NR	rs12305809-G	0.6065	1E-12		0.0333	[0.024-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1605	chr12	133780308	133780309	rs36127550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	12q24.33		rs36127550-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1605	chr12	133781162	133781163	rs36174733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	12q24.33		rs36174733-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1605	chr12	133818019	133818020	rs141968321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	12q24.33		rs141968321-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1605	chr12	133821899	133821900	rs150601710	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	12q24.33	ANHX	rs150601710-G	0.984278266550362	7E-7	(F_Sutterellaceae_HB)	1.70995	[1.04-2.38] unit increase	Illumina [7711310] (imputed)	N
731	chr13	19225891	19225892	rs115274671	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q11	NR	rs115274671-?	NR	1E-6		4275.92	NR unit decrease	Illumina [2379855]	N
732	chr13	19303481	19303482	rs12584385	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	13q11	TUBA3C	rs12584385-?	NR	7E-7		0.077	[0.046-0.107] unit increase	Illumina [12039492] (imputed)	N
732	chr13	19311240	19311241	rs9552416	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	13q11	TUBA3C	rs9552416-T	0.0795	3E-24		0.006033	[0.0049-0.0072] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
732	chr13	19366280	19366281	rs114363471	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	13q11	ANKRD20A9P	rs114363471-?		3E-6		1.5006	[NR] unit decrease	Affymetrix [NR] (imputed)	N
733	chr13	19440122	19440123	rs2440012	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	13q11	ANKRD20A9P	rs2440012-C	NR	4E-8		1.6611296	[NR]	Illumina [5595657] (imputed)	N
733	chr13	19444827	19444828	rs1838126	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	13q11	NR	rs1838126-T	0.24	3E-6	(female)	1.8	[NR]	Illumina [5730693] (imputed)	N
733	chr13	19513612	19513613	rs542291300	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	13q12.11	NR	rs542291300-?	NR	1E-6		1.22257	[0.73-1.72] unit increase	NR [13958389] (imputed)	N
733	chr13	19525104	19525105	rs113988902	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	13q12.11	NR	rs113988902-C	0.04	2E-6		1.52	1.28-1.80	NR [at least 8482392] (imputed)	N
733	chr13	19525104	19525105	rs113988902	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	13q12.11	NR	rs113988902-C	0.04	2E-6		1.52	1.28-1.80	NR [at least 8482392] (imputed)	N
734	chr13	19591943	19591944	rs9511099	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	13q12.11	intergenic	rs9511099-?	NR	4E-7				Illumina [655023]	N
734	chr13	19631156	19631157	rs7989524	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	13q12.11	intergenic	rs7989524-A	NR	3E-6	(Chinese)	1.1627907	[1.1-1.23]	Affymetrix, Illumina [up to 5107227] (imputed)	N
734	chr13	19633919	19633920	rs17063895	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PHF2P2	rs17063895-?	NR	2E-9		0.905639	[NR] unit decrease	Affymetrix [NR] (imputed)	N
735	chr13	19731543	19731544	rs190312121	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q12.11	Intergenic	rs190312121-A	1.0	5E-6	(AA)	0.764	unit increase	Illumina [NR] (imputed)	N
735	chr13	19756062	19756063	rs17076896	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	13q12.11	TUBA3C	rs17076896-G	0.014	8E-9		21.03	[NR]	Affymetrix [559609]	N
736	chr13	19807892	19807893	rs7993766	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	13q12.11		rs7993766-A	0.0137437	2E-8		0.0893018	[0.058-0.12] unit increase	Illumina [7980478] (imputed)	N
736	chr13	19807892	19807893	rs7993766	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	13q12.11		rs7993766-A	0.0137437	6E-9		0.11393	[0.076-0.152] unit increase	Illumina [7980478] (imputed)	N
736	chr13	19921379	19921380	rs2485016	34067580	Kim HR	2021-05-17	Genes (Basel)	A Genome-Wide Association Study for Hypertensive Kidney Disease in Korean Men.	Hypertensive renal disease	310 Korean ancestry male cases, 2,294 Korean ancestry male controls	43 Korean ancestry male cases, 636 Korean ancestry male controls	13q12.11	LINC00421	rs2485016-C	0.056	2E-6		2.11	[1.55 - 2.86]	Affymetrix [NR] (imputed)	N
737	chr13	19972232	19972233	rs9512950	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	13q12.11	TPTE2	rs9512950-C	0.2992	8E-6		0.2572	[0.15-0.36] unit decrease	Illumina [533687]	N
737	chr13	19978999	19979000	rs2992933	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q12.11	NR	rs2992933-?	NR	6E-7		4.14	[3.11-5.53]	Illumina [539000] (imputed)	N
738	chr13	20069823	20069824	rs117170334	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q12.11	NR	rs117170334-?	NR	5E-10	(total brain volume)			NR [9227495] (imputed)	N
738	chr13	20100533	20100534	rs2880301	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	13q12.11	Intergenic	rs2880301-?		1E-9				NR [NR]	N
738	chr13	20100533	20100534	rs2880301	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol and triglyceride levels (pleiotropy)	821 individuals	NA	13q12.11	NA	rs2880301-?	NR	2E-13	(USAT)			Affymetrix [587358]	N
738	chr13	20100533	20100534	rs2880301	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q12.11	NR	rs2880301-?	NR	1E-6		0.0145	[0.0086-0.0204] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
738	chr13	20177592	20177593	rs9579517	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	13q12.11	MPHOSPH8	rs9579517-C	0.9	9E-6	(Male)	0.519	[0.39-0.65]	NR [up to 1668415] (imputed)	N
739	chr13	20306612	20306613	rs184967583	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	13q12.11	PSPC1	rs184967583-A	0.0026	3E-6		1.1624	[0.67-1.65] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
740	chr13	20387888	20387889	rs116112440	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	13q12.11	ZMYM5	rs116112440-G	0.060959791122715434	9E-6	(AA)	0.708	[0.39-1.02] unit increase	Illumina [at least 988306] (imputed)	N
741	chr13	20469352	20469353	rs60610174	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	13q12.11	ZMYM5	rs60610174-A	0.0693	3E-8	(EA, women)	0.1567	[0.1-0.21] unit increase	Affymetrix [up to 12500000] (imputed)	N
741	chr13	20485184	20485185	rs35383313	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-ankle pulse wave velocity)	6,734 European ancestry individuals	NA	13q12.11	ZMYM5	rs35383313-C	0.67	3E-7		0.012	[0.0081-0.0159] unit decrease	Affymetrix [11342744] (imputed)	N
741	chr13	20490004	20490004	rs11433086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	13q12.11		rs11433086-CT	NR	4E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
741	chr13	20510449	20510450	rs9508970	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Psychroserpens abundance in stool	5,959 Finnish ancestry individuals	NA	13q12.11		rs9508970-G	0.0370992	1E-8		0.0979542	[0.064-0.132] unit increase	Illumina [7980478] (imputed)	N
742	chr13	20616556	20616557	rs9579775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q12.11		rs9579775-C	NR	3E-11		0.0235	[0.017-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
742	chr13	20616556	20616557	rs9579775	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q12.11	ZMYM2	rs9579775-A	0.864423	2E-12		0.0146498	[0.011-0.019] unit decrease	Affymetrix [12370749]	N
742	chr13	20616556	20616557	rs9579775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q12.11	NR	rs9579775-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
742	chr13	20616556	20616557	rs9579775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q12.11		rs9579775-?	NR	2E-12				NR [~ 8900000] (imputed)	N
742	chr13	20616556	20616557	rs9579775	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	13q12.11	ZMYM2	rs9579775-A	0.8646	1E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
742	chr13	20637139	20637140	rs7324021	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	13q12.11	NR	rs7324021-?		3E-7	(genus_Olsenella)	1.036843	[0.64-1.43] unit decrease	Affymetrix [211319]	N
742	chr13	20700963	20700964	rs73442383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	13q12.11	GJA3	rs73442383-T	0.9987	1E-6		1.5949	[0.95-2.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr13	20724571	20724572	rs9550616	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (happy faces)	4,097 European ancestry individuals	NA	13q12.11	ZMYM2, GJA3, GJB2, GJB6	rs9550616-A	0.355	3E-6		4.69	z score decrease	Illumina [2487351] (imputed)	N
743	chr13	20728089	20728090	rs12428977	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q12.11	GJA3	rs12428977-?		8E-6				Illumina [4322238] (imputed)	N
743	chr13	20736215	20736216	rs6490525	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	13q12.11	intergenic	rs6490525-?	NR	4E-6				NR [~ 2000000]	N
743	chr13	20790450	20790451	rs112803755	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (1df)	73,908 European ancestry individuals	7,284 European ancestry individuals	13q12.11	GJB6	rs112803755-G	0.0416	6E-10		0.3084	[0.10-0.51] unit decrease	Affymetrix [7953600] (imputed)	N
743	chr13	20810323	20810324	rs116855998	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: I am completely deaf (UKB data field 2247_99)	106 European ancestry cases, 437,661 European ancestry controls	NA	13q12.11		rs116855998-G	0.006791	8E-16		12.45	[9.42-15.48] unit increase	NR [11842647] (imputed)	N
744	chr13	20898329	20898330	rs11616264	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombomodulin modified thrombin generation parameter (lagtime)	327 European ancestry individuals	NA	13q12.11		rs11616264-T	0.174	1E-6		0.53	min increase	Illumina [7000000] (imputed)	N
744	chr13	20898329	20898330	rs11616264	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombin generation parameter (lagtime)	327 European ancestry individuals	NA	13q12.11		rs11616264-T	0.174	3E-7		0.55	min increase	Illumina [7000000] (imputed)	N
744	chr13	20933534	20933535	rs9552152	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	13q12.11	NR	rs9552152-A	0.8579	3E-6		0.2191	[0.13-0.31] unit decrease	Illumina [NR] (imputed)	N
744	chr13	20933534	20933535	rs9552152	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	13q12.11	NR	rs9552152-A	0.858	9E-6		0.2105	[0.12-0.3] unit decrease	Illumina [NR] (imputed)	N
745	chr13	21050574	21050575	rs7989332	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	13q12.11	CRYL1	rs7989332-G	0.738	5E-6	(Allelic model)	2.056	[1.507-2.806]	Illumina [733202]	N
745	chr13	21093603	21093604	rs4770049	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	CRYL1	rs4770049-G	0.061	5E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
746	chr13	21131210	21131211	rs9506514	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	13q12.11	IFT88	rs9506514-A	0.53	5E-6	(AA)	0.17	[0.092-0.248] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
746	chr13	21135339	21135347	rs200629715	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	13q12.11	intergenic	rs200629715-?	NR	3E-7		5.34	[2.81-10.15]	Illumina [9380034] (imputed)	N
746	chr13	21143120	21143121	rs4770057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q12.11		rs4770057-A	0.7809	3E-8	(conditional-joint)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
746	chr13	21209511	21209512	rs7326068	20713499	Huang J	2010-08-16	Am J Psychiatry	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	13q12.11	IFT88	rs7326068-A	0.19	3E-6				Affymetrix, Perlegen [1574154] (imputed)	N
747	chr13	21254365	21254366	rs73165468	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	13q12.11	IFT88	rs73165468-?	NR	4E-7		4.88	[2.65-8.97]	Illumina [9380034] (imputed)	N
747	chr13	21280033	21280034	rs735539	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	13q12.11	IFT88	rs735539-?	NR	4E-6	(DMFS2)			Illumina [518997]	N
747	chr13	21295007	21295013	rs1456207863	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	13q12.11		rs1456207863-C	0.03053	2E-7		0.1743		Illumina [7608150]	N
747	chr13	21298992	21298993	rs7317804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs7317804-T	0.79131	9E-12	(-114 ms)	0.0447333	[0.031-0.059] unit increase	Affymetrix [10000000] (imputed)	N
747	chr13	21298992	21298993	rs7317804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs7317804-T	0.79131	5E-12	(-94 ms)	0.0461711	[0.032-0.06] unit increase	Affymetrix [10000000] (imputed)	N
747	chr13	21298992	21298993	rs7317804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs7317804-T	0.79131	5E-12	(-100 ms)	0.0470048	[0.033-0.061] unit increase	Affymetrix [10000000] (imputed)	N
747	chr13	21298992	21298993	rs7317804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs7317804-T	0.79131	3E-10	(-116 ms)	0.0413993	[0.028-0.055] unit increase	Affymetrix [10000000] (imputed)	N
747	chr13	21298992	21298993	rs7317804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs7317804-T	0.79131	2E-14	(-104 ms)	0.0507921	[0.037-0.065] unit increase	Affymetrix [10000000] (imputed)	N
747	chr13	21300908	21300909	rs2253017	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	13q12.11	IL17D, N6AMT2	rs2253017-T	0.15	2E-8		1.58	[1.03-2.13] unit increase	Illumina [2300000] (imputed)	N
747	chr13	21304199	21304200	rs2818988	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q12.11	Intergenic	rs2818988-T	0.32	8E-12	(MTAG)	0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
747	chr13	21338342	21338343	rs6490618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q12.11		rs6490618-T	0.327	3E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
747	chr13	21349666	21349667	rs12430409	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	13q12.11	N6AMT2, XPO4	rs12430409-A	0.81009	2E-6		1.0867591	[1.05-1.14]	NR [NR] (imputed)	N
747	chr13	21356539	21356540	rs4294650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q12.11	Intergenic	rs4294650-T	0.3016	5E-13	(MTAG)	0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
747	chr13	21356539	21356540	rs4294650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q12.11	Intergenic	rs4294650-T	0.3103	2E-11	(MTAG)	0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
747	chr13	21356539	21356540	rs4294650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q12.11	Intergenic	rs4294650-T	0.3088	5E-12	(MTAG)	0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
747	chr13	21356539	21356540	rs4294650	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q12.11	XPO4	rs4294650-T	NR	3E-9		5.92	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
748	chr13	21394070	21394071	rs2762991	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	13q12.11	AK055408	rs2762991-?	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
748	chr13	21396510	21396511	rs73167445	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with epithelioid cells	285 European ancestry cases, 5,199 European ancestry controls	NA	13q12.11		rs73167445-T	0.07	2E-6		1.86		Illumina [10258281] (imputed)	N
748	chr13	21398978	21398979	rs2585897	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	13q12.11	XPO4	rs2585897-A	0.18	9E-16		1.2	[0.91-1.49] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
748	chr13	21406857	21406858	rs1822365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.11		rs1822365-?	NR	1E-23				NR [~ 8900000] (imputed)	N
748	chr13	21472054	21472055	rs7321635	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q12.11	XPO4	rs7321635-A	0.3535	3E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix [18391927] (imputed)	N
748	chr13	21487598	21487599	rs9578326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q12.11	Intergenic	rs9578326-G	0.765	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
748	chr13	21487598	21487599	rs9578326	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q12.11	NR	rs9578326-?	NR	4E-7		5.08	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
749	chr13	21543501	21543502	rs61950149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.11		rs61950149-?	NR	4E-32				NR [~ 8900000] (imputed)	N
749	chr13	21546512	21546513	rs9578336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q12.11		rs9578336-?	NR	5E-9				NR [~ 8900000] (imputed)	N
749	chr13	21547653	21547655	rs58156767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q12.11		rs58156767-C	NR	1E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
749	chr13	21558453	21558454	rs663599	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.11	NR	rs663599-?	NR	3E-8				Affymetrix [NR]	N
749	chr13	21559857	21559858	rs2480171	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	13q12.11	snoU13	rs2480171-T	0.1221	5E-10		0.2909	[0.2-0.38] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
749	chr13	21562831	21562832	rs2770928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q12.11		rs2770928-T	NR	8E-16		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
749	chr13	21562831	21562832	rs2770928	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.11		rs2770928-T	0.881	3E-10		0.20239973	[0.13-0.27] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
749	chr13	21570667	21570668	rs673314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q12.11	LATS2	rs673314-C	NR	6E-9		0.0238239	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
749	chr13	21578149	21578150	rs117020914	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LATS2	rs117020914-?	NR	4E-9	(male)	1.63145	[NR] unit decrease	Affymetrix [NR] (imputed)	N
749	chr13	21578149	21578150	rs117020914	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LATS2	rs117020914-?	NR	4E-12		1.48303	[NR] unit decrease	Affymetrix [NR] (imputed)	N
749	chr13	21596182	21596183	rs587289	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q12.11	LATS2	rs587289-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
750	chr13	21637225	21637226	rs79709326	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	13q12.11	LATS2	rs79709326-T	0.923	6E-6		1.4925373	[1.32-1.67]	Affymetrix, Illumina [~ 8500000] (imputed)	N
750	chr13	21694558	21694559	rs73169578	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q12.11	intergenic	rs73169578-?	NR	5E-7		0.224	[0.13-0.31] unit decrease	Illumina [at least 13000000] (imputed)	N
750	chr13	21697196	21697197	rs9509558	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	13q12.11		rs9509558-T	0.3993	4E-6		30.228193	z score increase	NR [6814003]	N
751	chr13	21798496	21798497	rs9580025	34337522	van der Zanden LFM	2021-04-24	Eur Urol Open Sci	<i>CDH12</i> as a Candidate Gene for Kidney Injury in Posterior Urethral Valve Cases: A Genome-wide Association Study Among Patients with Obstructive Uropathies.	Kidney injury 5 years post-surgery in obstructive uropathies	141 European ancestry cases, 216 European ancestry controls	NA	13q12.11		rs9580025-T	NR	8E-6	(adjusted)	2.4		Illumina [622697] (imputed)	N
751	chr13	21815868	21815869	rs17064136	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	ESRRAP2	rs17064136-A	0.037	4E-6	(C-peptide )	0.04	[NR] ng/mL increase	Illumina [899892]	N
751	chr13	21834061	21834062	rs9580043	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	13q12.11	LOC105370105	rs9580043-G	0.015	1E-6		0.17	NR unit increase	Illumina [6417232] (imputed)	N
751	chr13	21846477	21846478	rs73171671	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	13q12.11	MRP63, MIPEPP3	rs73171671-A	0.26	5E-6	(adjusted for severity)	1.34	[1.21-1.47]	Affymetrix, Illumina [~ 8500000] (imputed)	N
751	chr13	21870113	21870114	rs155076	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	13q12.11	ZDHHC20	rs155076-G	0.19	4E-7	(Hispanic)			Affymetrix, Illumina [14227402] (imputed)	N
751	chr13	21876095	21876096	rs9788333	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	13q12.11	ZDHHC20	rs9788333-G	0.11	4E-6	(AA-triglyceride response)	28.65	[16.46-40.84] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
752	chr13	21915113	21915114	rs17356983	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.11	intergenic	rs17356983-G	0.158	2E-6	(Hcy )	0.03	[NR] umol/L increase	Illumina [899892]	N
752	chr13	21921047	21921048	rs75501492	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q12.11	NR	rs75501492-?	NR	2E-6		4.716	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
752	chr13	21962206	21962207	rs9316337	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q12.11	NR	rs9316337-G	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
753	chr13	22055964	22055965	rs7336891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.11		rs7336891-?	NR	9E-9				NR [~ 8900000] (imputed)	N
753	chr13	22071457	22071458	rs111602937	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	13q12.11	NR	rs111602937-T	0.8766	2E-7		0.1043	[0.065-0.144] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
753	chr13	22085658	22085659	rs718426	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	13q12.11	EFHA1	rs718426-G	0.41	3E-24		1.2	[0.98-1.42] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
753	chr13	22103293	22103294	rs12869776	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q12.11	XPO4, EFHA1	rs12869776-A	0.5976	1E-51		0.9825	[0.86-1.11] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	9E-13	(-176 ms)	0.0395263	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	7E-9	(-156 ms)	0.0331008	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	5E-12	(-178 ms)	0.0382566	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	4E-12	(-170 ms)	0.038667	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	4E-12	(-162 ms)	0.0390133	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	4E-10	(-158 ms)	0.0356044	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	3E-8	(-154 ms)	0.0318565	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	3E-11	(-172 ms)	0.0367985	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	2E-11	(-166 ms)	0.0370178	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	2E-11	(-164 ms)	0.0376369	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	1E-11	(-174 ms)	0.0374565	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	1E-11	(-168 ms)	0.038324	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22115821	22115822	rs11616720	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q12.11	MICU2	rs11616720-A	0.603991	1E-11	(-160 ms)	0.0381512	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
753	chr13	22116803	22116804	rs2761909	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	13q12.11	MICU2	rs2761909-?	NR	4E-9				Affymetrix, Illumina [22000000] (imputed)	N
753	chr13	22118301	22118302	rs11840168	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	13q12.11	EFHA1	rs11840168-G	0.413	7E-12		1.28	[0.91-1.65] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
753	chr13	22131896	22131897	rs2798269	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	13q12.11	EFHA1	rs2798269-T	0.399	3E-10		1.382	[0.95-1.81] unit decrease	Illumina [2300000] (imputed)	N
754	chr13	22165586	22165587	rs115497715	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q12.11	NR	rs115497715-A	0.9049	3E-7		0.1189	[0.073-0.164] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
754	chr13	22185793	22185794	rs912387	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.11		rs912387-?	NR	5E-9		0.0119943	[0.0078-0.0162] unit decrease	Affymetrix [20259828] (imputed)	N
754	chr13	22190517	22190518	rs2798259	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.11		rs2798259-A	0.44	9E-13		7.15	z score increase	Affymetrix [9061022] (imputed)	N
755	chr13	22292089	22292094	rs67836407	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs67836407-G	0.607	5E-9		0.0612256	[0.041-0.082] unit increase	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22292089	22292094	rs67836407	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs67836407-G	0.607	2E-7	(men)	0.068419	[0.043-0.094] unit increase	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22294116	22294117	rs483071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	13q12.11		rs483071-T	NR	2E-15		0.0583	[0.044-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
755	chr13	22295867	22295868	rs620124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	13q12.11		rs620124-C	NR	2E-14		0.0657	[0.049-0.083] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
755	chr13	22295867	22295868	rs620124	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	13q12.11	FGF9	rs620124-G	0.329831	2E-14		0.06645428	[0.049-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
755	chr13	22298922	22298923	rs606950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q12.11		rs606950-?	NR	6E-19				NR [~ 8900000] (imputed)	N
755	chr13	22298922	22298923	rs606950	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q12.11	FGF9	rs606950-A	0.615	4E-20		0.2324	[0.18-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
755	chr13	22299074	22299075	rs955783	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs955783-T	0.425	4E-10		0.0636697	[0.044-0.084] unit increase	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22299074	22299075	rs955783	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs955783-T	0.424	7E-6	(men)	0.0567802	[0.032-0.082] unit increase	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22305098	22305099	rs518590	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	13q12.11	intergenic	rs518590-?	0.21	2E-7	(quetiapine-HDL)			Affymetrix [492900]	N
755	chr13	22313164	22313165	rs9285177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	13q12.11	NR	rs9285177-C	NR	2E-14		0.024	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
755	chr13	22314145	22314146	rs9506725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	13q12.11		rs9506725-C	NR	1E-11		0.0423	[0.03-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
755	chr13	22314145	22314146	rs9506725	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	13q12.11		rs9506725-T	NR	2E-12		0.0197	[0.014-0.025] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
755	chr13	22314145	22314146	rs9506725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q12.11	NR	rs9506725-T	0.629106	5E-73		0.0523465	[0.047-0.058] unit increase	Affymetrix [16580851] (imputed)	N
755	chr13	22314145	22314146	rs9506725	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	13q12.11	FGF9	rs9506725-C	0.370441	5E-16		0.066166	[0.05-0.082] unit decrease	Affymetrix [7288503] (imputed)	N
755	chr13	22314145	22314146	rs9506725	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	13q12.11	FGF9	rs9506725-C	0.370015	5E-12		0.04320513	[0.031-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
755	chr13	22314145	22314146	rs9506725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q12.11		rs9506725-?	NR	8E-11				NR [~ 8900000] (imputed)	N
755	chr13	22314145	22314146	rs9506725	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q12.11	intergenic	rs9506725-T	0.6487	1E-15		0.2172	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
755	chr13	22314145	22314146	rs9506725	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q12.11	intergenic	rs9506725-T	0.6475	3E-9		0.1175	[0.079-0.156] mmHg increase	Affymetrix [NR] (imputed)	N
755	chr13	22317658	22317658	rs111730697	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs111730697-TATCC	0.26	2E-8		0.0719463	[0.047-0.097] unit decrease	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22318313	22318314	rs9509847	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	13q12.11	NR	rs9509847-C	0.628041	2E-52		0.0200719	[0.017-0.023] unit increase	Affymetrix [16578495] (imputed)	N
755	chr13	22318505	22318506	rs629042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	13q12.11		rs629042-C	NR	1E-8		0.0409	[0.027-0.055] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
755	chr13	22318505	22318506	rs629042	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	13q12.11	NR	rs629042-C	0.6070329999999999	4E-18		0.0173631	[0.013-0.021] unit increase	Affymetrix [16583148] (imputed)	N
755	chr13	22318505	22318506	rs629042	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	13q12.11	NR	rs629042-C	0.607001	7E-29		0.0284066	[0.023-0.034] unit increase	Affymetrix [16585745] (imputed)	N
755	chr13	22319208	22319209	rs615567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q12.11		rs615567-T	NR	1E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
755	chr13	22319208	22319209	rs615567	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs615567-T	0.393	3E-14		0.078	[0.058-0.098] unit decrease	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22319208	22319209	rs615567	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs615567-T	0.393	2E-7	(women)	0.085	[0.053-0.117] unit decrease	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22319208	22319209	rs615567	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	13q12.11	NR	rs615567-T	0.392	3E-8	(men)	0.0716892	[0.046-0.097] unit decrease	Affymetrix [up to 8900000] (imputed)	N
755	chr13	22332821	22332822	rs12583553	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	13q12.11	FGF9	rs12583553-A	0.97	4E-9		0.02395	[0.015-0.033] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
755	chr13	22343924	22343925	rs613813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q12.11		rs613813-C	NR	4E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
755	chr13	22350874	22350875	rs749170	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q12.11	NR	rs749170-T	0.33540899999999996	7E-10		0.00509753	[0.0033-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
755	chr13	22350874	22350875	rs749170	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q12.11	NR	rs749170-T	0.33540899999999996	3E-6		0.00433552	[0.0024-0.0063] unit increase	Affymetrix [16582965] (imputed)	N
755	chr13	22351136	22351137	rs500802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q12.11		rs500802-C	NR	5E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
755	chr13	22351136	22351137	rs500802	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	13q12.11	FGF9, SGCG	rs500802-T	0.68	6E-11		6.54	z-score increase	Affymetrix [4314223] (imputed)	N
755	chr13	22384024	22384025	rs80086666	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q12.11	NR	rs80086666-T	NR	7E-6	(GEE model)	0.88148	[0.5-1.27] unit decrease	NR [NR] (imputed)	N
756	chr13	22446755	22446756	rs2763895	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	13q12.11	NR	rs2763895-G	0.3751	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [10858887] (imputed)	N
756	chr13	22469239	22469240	rs9316596	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	13q12.11	LINC00424, LINC00540	rs9316596-A	0.343	8E-7				Affymetrix [432921]	N
756	chr13	22473592	22473593	rs7993238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q12.11	LINC00424	rs7993238-C	NR	2E-8		0.0166281	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
756	chr13	22473592	22473593	rs7993238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q12.11	LINC00424	rs7993238-C	NR	2E-8		0.0166739	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
756	chr13	22473592	22473593	rs7993238	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q12.11	NR	rs7993238-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
756	chr13	22473592	22473593	rs7993238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q12.11		rs7993238-?	NR	2E-11				NR [~ 8900000] (imputed)	N
756	chr13	22473592	22473593	rs7993238	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	13q12.11	NR	rs7993238-A	0.6498	2E-10		0.012	[0.0083-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
756	chr13	22487624	22487625	rs17369571	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	13q12.11	FGF3	rs17369571-?	0.16	1E-7	(IL1RA)			Illumina [496032]	N
756	chr13	22493634	22493635	rs114402357	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	13q12.11	Intergenic	rs114402357-T	0.01	2E-6		2.03	[1.25-2.81] unit increase	Illumina [~ 31000000] (imputed)	N
757	chr13	22562889	22562890	rs76759072	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q12.11	NR	rs76759072-T	0.02265	2E-8	(IARS2)	0.07699	NR unit decrease	Illumina [1671387] (imputed)	N
757	chr13	22575197	22575198	rs17074792	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (early onset)(pleiotropy)	326 European ancestry cases, 4,320 European ancestry controls	NA	13q12.11	NR	rs17074792-?	NR	2E-6		1.73	1.38-2.16	Illumina [959859] (imputed)	N
757	chr13	22589882	22589883	rs9316706	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q12.11	FGF9	rs9316706-A	0.351	3E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
757	chr13	22620206	22620207	rs7999075	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	13q12.11	FGF9	rs7999075-?		1E-6				Illumina [859311]	N
757	chr13	22630602	22630603	rs11839433	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	13q12.11	FGF9	rs11839433-?	NR	9E-6		0.352	[0.2-0.51] unit increase	Affymetrix, Illumina [NR] (imputed)	N
757	chr13	22641111	22641112	rs4770234	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.11		rs4770234-A	0.09	8E-11		6.5	z score increase	Affymetrix [9061022] (imputed)	N
757	chr13	22641111	22641112	rs4770234	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q12.11		rs4770234-A	0.09	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
757	chr13	22641111	22641112	rs4770234	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q12.11	NR	rs4770234-A	0.089	1E-10				NR [9056863] (imputed)	N
757	chr13	22643565	22643566	rs9509989	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.11	LINC00540	rs9509989-T	0.118127	5E-12		0.0197323	[0.014-0.025] unit decrease	NR [13737936] (imputed)	N
757	chr13	22643565	22643566	rs9509989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.11		rs9509989-?	NR	4E-10				NR [~ 8900000] (imputed)	N
757	chr13	22643565	22643566	rs9509989	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.11		rs9509989-?	NR	5E-11		0.0199538	[0.014-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
757	chr13	22644216	22644217	rs1323168	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA			rs1323168-?	NR	5E-11		0.0199419	[0.014-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
757	chr13	22644216	22644217	rs1323168	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA		LINC00540	rs1323168-A	0.123946	3E-6	(women)	0.0312677	[0.017-0.045] unit decrease	NR [17166351] (imputed)	N
757	chr13	22644216	22644217	rs1323168	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA		LINC00540	rs1323168-A	0.123309	2E-9		0.030783	[0.021-0.041] unit decrease	NR [17166351] (imputed)	N
757	chr13	22660657	22660658	rs4770242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	13q12.11		rs4770242-G	NR	3E-9		0.0746	[0.05-0.099] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
757	chr13	22669057	22669058	rs17075855	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	13q12.11	LINC00540	rs17075855-A	NR	4E-8		1.098901	[1.06-1.14]	Affymetrix [at least 665500] (imputed)	N
757	chr13	22673869	22673870	rs4769194	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	13q12.11	LINC00424, LINC00540	rs4769194-A	NR	3E-13		0.0672	unit increase	Illumina [15409056] (imputed)	N
757	chr13	22674325	22674326	rs146343995	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q12.11	Intergenic	rs146343995-?		5E-7		1.16	[1.09-1.23]	Illumina [7645193] (imputed)	N
757	chr13	22674325	22674326	rs146343995	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q12.11	Intergenic	rs146343995-?		2E-7		4.31	[2.49-7.46]	Illumina [7645193] (imputed)	N
758	chr13	22690126	22690127	rs9552597	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	13q12.11	NR	rs9552597-A	NR	3E-13		0.0232	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
758	chr13	22690126	22690127	rs9552597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q12.11	NR	rs9552597-A	0.190986	5E-24		0.0354372	[0.028-0.042] unit increase	Affymetrix [16580851] (imputed)	N
758	chr13	22709669	22709670	rs7318731	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	13q12.11	intergenic	rs7318731-A	0.48	1E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
758	chr13	22713707	22713708	rs73168105	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	13q12.11	FGF9	rs73168105-?	NR	3E-13		1.149	[1.107-1.193]	Illumina [13537761] (imputed)	N
758	chr13	22729204	22729205	rs9578438	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	13q12.11	intergenic	rs9578438-T	0.0393	1E-6	(Case/control)	1.2374	[0.74-1.73] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
758	chr13	22754092	22754093	rs9580312	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	13q12.11	LOC100506622	rs9580312-G	0.409	8E-6	(Dominant model)	1.33	[1.12-1.581]	Illumina [733202]	N
758	chr13	22766888	22766889	rs114779578	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00540	rs114779578-?	NR	7E-9	(female)	0.583085	[NR] unit increase	Affymetrix [NR] (imputed)	N
758	chr13	22775961	22775962	rs17076345	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q12.11	NR	rs17076345-A	0.04181	8E-9	(ACAT2)	0.4655	NR unit increase	Illumina [1671387] (imputed)	N
758	chr13	22777782	22777783	rs9552616	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.11	EFHA1	rs9552616-?	NR	6E-8	(ribose 5 P; ribulose 5 P)	0.33756092	[0.22-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
758	chr13	22791026	22791027	rs7329697	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	13q12.11	LINC00540	rs7329697-C	NR	3E-7		5.102	[NR] unit increase	Illumina [632375]	N
759	chr13	22810614	22810615	rs7998010	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q12.11	LINC00540	rs7998010-A	0.664021	1E-10		0.00152134	[0.001-0.002] unit decrease	Affymetrix [13995440] (imputed)	N
759	chr13	22811939	22811940	rs8002850	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.11	LINC00540	rs8002850-G	0.66551	8E-51		0.0295206	[0.026-0.033] unit increase	NR [13737936] (imputed)	N
759	chr13	22811939	22811940	rs8002850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.11		rs8002850-?	NR	7E-48				NR [~ 8900000] (imputed)	N
759	chr13	22811939	22811940	rs8002850	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.11		rs8002850-?	NR	5E-49		0.0313306	[0.027-0.036] unit increase	Affymetrix [20259828] (imputed)	N
759	chr13	22811939	22811940	rs8002850	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q12.11	LINC00540	rs8002850-G	0.665786	4E-7	(men)	0.0267342	[0.016-0.037] unit increase	NR [17166351] (imputed)	N
759	chr13	22811939	22811940	rs8002850	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q12.11	LINC00540	rs8002850-G	0.664482	1E-17		0.030048	[0.023-0.037] unit increase	NR [17166351] (imputed)	N
759	chr13	22811939	22811940	rs8002850	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q12.11	LINC00540	rs8002850-G	0.663343	1E-12	(women)	0.0341703	[0.025-0.044] unit increase	NR [17166351] (imputed)	N
759	chr13	22842560	22842561	rs9552628	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	DTU024 sp002411105 abundance in stool	5,959 Finnish ancestry individuals	NA	13q12.11		rs9552628-G	0.0420734	3E-8		0.0784247	[0.051-0.106] unit increase	Illumina [7980478] (imputed)	N
759	chr13	22861920	22861921	rs9316871	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	13q12.11	LINC00540	rs9316871-G	0.201	5E-10		1.15	[1.10-1.15]	Affymetrix, Illumina [5363770] (imputed)	N
759	chr13	22862439	22862440	rs9510086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	13q12.11		rs9510086-C	NR	3E-16		0.206	[0.16-0.26] unit decrease	Affymetrix, Illumina [25843950] (imputed)	N
759	chr13	22871445	22871446	rs7994761	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	13q12.11		rs7994761-A	0.779627	5E-42		0.112157	[0.096-0.129] increase	Affymetrix [NR]	N
759	chr13	22871445	22871446	rs7994761	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	13q12.11		rs7994761-A	0.780065	6E-42		0.120265	[0.1-0.14] increase	Affymetrix [NR]	N
759	chr13	22912837	22912838	rs548407431	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	13q12.11		rs548407431-?	NR	7E-7		4.26196		NR [NR] (imputed)	N
759	chr13	22917528	22917529	rs158888	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.11	EFHA1	rs158888-?	NR	3E-6	(TAG 52:2)	0.25143674	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
759	chr13	22917528	22917529	rs158888	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.11	EFHA1	rs158888-?	NR	2E-6	(TAG 52:3)	0.25507188	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
760	chr13	22978752	22978753	rs9316969	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	13q12.11	SEMA6A	rs9316969-?		5E-9				NR [7428630] (imputed)	N
760	chr13	22978752	22978753	rs9316969	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	13q12.11	LINC00540	rs9316969-?	NR	3E-8		0.0801	[0.052-0.109] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
760	chr13	22980145	22980146	rs78428340	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q12.11		rs78428340-A	0.24	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
760	chr13	22980145	22980146	rs78428340	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q12.11		rs78428340-A	0.24	1E-14		7.7	z score increase	Affymetrix [9061022] (imputed)	N
760	chr13	22980145	22980146	rs78428340	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q12.11	NR	rs78428340-A	0.2432	7E-9				NR [9056863] (imputed)	N
760	chr13	22980145	22980146	rs78428340	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	13q12.11	NR	rs78428340-?		7E-13				NR [7428630] (imputed)	N
760	chr13	22980190	22980191	rs9316971	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.11		rs9316971-T	0.3	3E-27		10.83	z score increase	Affymetrix [9061022] (imputed)	N
760	chr13	22980190	22980191	rs9316971	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	13q12.11		rs9316971-T	NR	9E-8		0.0128	[0.0083-0.0173] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
760	chr13	22980190	22980191	rs9316971	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	13q12.11		rs9316971-T	0.29	4E-21		0.009	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
760	chr13	22980190	22980191	rs9316971	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	13q12.11		rs9316971-T	0.28	2E-7		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
760	chr13	22980190	22980191	rs9316971	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.11		rs9316971-?	NR	2E-12		0.0168299	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
760	chr13	22991578	22991579	rs55736210	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	13q12.11		rs55736210-?	NR	4E-9				NR [9705931] (imputed)	N
760	chr13	22994579	22994580	rs76894892	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q12.11	NR	rs76894892-A	0.238	1E-17				NR [9056863] (imputed)	N
760	chr13	22994579	22994580	rs76894892	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	13q12.11	AFAP1, AC097381.1	rs76894892-?		4E-9				NR [7428630] (imputed)	N
760	chr13	23004155	23004156	rs111896171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.11		rs111896171-?	NR	1E-14				NR [~ 8900000] (imputed)	N
760	chr13	23004331	23004332	rs75983310	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.11	LINC00540	rs75983310-T	0.74741	9E-18		0.0183209	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
760	chr13	23022107	23022108	rs76655016	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	13q12.11	LINC00540	rs76655016-A	0.01	2E-6		2.98	[1.90-4.70]	Affymetrix, Illumina [up to 7729175] (imputed)	N
760	chr13	23025128	23025129	rs79958840	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	13q12.11	NR	rs79958840-T	NR	6E-7	(African)	1.2013	[0.73-1.67] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
761	chr13	23124967	23124968	rs9285223	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	13q12.11	intergenic	rs9285223-?	NR	3E-6				Affymetrix [509886]	N
761	chr13	23147447	23147448	rs4622362	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	13q12.11	NR	rs4622362-A	0.04	1E-6	(AA)	0.28	[0.17-0.39] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
761	chr13	23170373	23170374	rs9317097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q12.11		rs9317097-?	NR	5E-8				NR [~ 8900000] (imputed)	N
761	chr13	23186545	23186545	rs11385416	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 60)	19,670 European ancestry individuals	NA	13q12.12		rs11385416-?	NR	6E-10				NR [9705931] (imputed)	N
761	chr13	23189678	23189679	rs7337023	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		LOC101927298	rs7337023-T	0.77	2E-6		0.17	[0.11-0.23] unit decrease	Illumina [3700000] (imputed)	N
762	chr13	23218996	23218997	rs138345734	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	13q12.12		rs138345734-?	NR	2E-6		0.7971496	[0.47-1.13] unit increase	Illumina [9875426] (imputed)	N
762	chr13	23227413	23227414	rs9510275	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9510275-T	0.303755	7E-13		0.0692334	[0.05-0.089] increase	Affymetrix [11014269] (imputed)	N
762	chr13	23228690	23228691	rs1034200	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	13q12.12	SGCG, FGF9	rs1034200-A	0.23	4E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
762	chr13	23228690	23228691	rs1034200	20719862	Vitart V	2010-08-18	Hum Mol Genet	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	13q12.12	AVGR8, AL354828.1	rs1034200-C	0.22	4E-9		0.14	[0.10-0.19] unit decrease	Illumina [~ 2000000] (imputed)	N
762	chr13	23235284	23235285	rs9552680	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	13q12.12	FGF9 - SGCG	rs9552680-?	NA	2E-15		2.04	[1.53-2.55] unit decrease	Affymetrix [5541230] (imputed)	N
762	chr13	23235284	23235285	rs9552680	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	13q12.12	LINC00424, BASP1P1	rs9552680-?	NR	1E-9		0.08	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
762	chr13	23294032	23294033	rs373767	22685421	Fan Q	2012-06-07	PLoS Genet	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Chinese ancestry individuals, 2,155 Malay ancestry individuals	NA	13q12.12	ZC3H11B	rs4373767-C	0.30	3E-10		0.16	[0.12-0.20] mm decrease	Illumina [456634]	N
762	chr13	23309381	23309382	rs314879	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q12.12	NR	rs314879-C	0.2262	6E-12		0.0393	[0.028-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
762	chr13	23309381	23309382	rs314879	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q12.12	NR	rs314879-C	0.2288	3E-15		0.0364	[0.027-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
762	chr13	23309381	23309382	rs314879	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	13q12.12	LINC00540, BASP1P1	rs314879-?	NR	5E-7				NR [at least 880000]	N
762	chr13	23311831	23311832	rs314877	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q12.12	intergenic	rs314877-G	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
763	chr13	23353492	23353493	rs146350366	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Sporadic miscarriage	49,996 European ancestry cases, 174,109 European ancestry controls	NA	13q12.12	NR	rs146350366-G	0.99	3E-8		1.39	[1.24-1.56]	Affymetrix, Illumina [9088459] (imputed)	N
763	chr13	23366135	23366141	rs138270994	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		13q12.12	intergenic	rs138270994-?	NR	6E-7	(AA)	0.045	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
763	chr13	23366746	23366747	rs9510344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	13q12.12		rs9510344-G	NR	5E-8		0.0612	[0.039-0.083] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
763	chr13	23368942	23368943	rs9506925	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	13q12.12	LINC00540, LINC00621, SGCG	rs9506925-T	0.267	3E-9		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
763	chr13	23371473	23371474	rs7987944	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	13q12.12	LINC00540, BASP1P1	rs7987944-C	0.34	1E-12	(EA)	1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
763	chr13	23373405	23373406	rs9580438	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	13q12.12	LINC00540, BASP1P1	rs9580438-C	0.32	1E-13		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
763	chr13	23412588	23412589	rs9506942	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	13q12.12	intergenic	rs9506942-C	0.57	6E-6		1.29		Illumina [~ 6300000] (imputed)	N
763	chr13	23412922	23412923	rs9552733	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	13q12.12	intergenic	rs9552733-G	0.57	6E-6		1.29		Illumina [~ 6300000] (imputed)	N
763	chr13	23453277	23453278	rs141464871	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	13q12.12	BASP1P1	rs141464871-A	NR	6E-6		1.0276676	[0.58-1.48] unit decrease	Illumina [> 6200000] (imputed)	N
764	chr13	23552107	23552108	rs4770359	31270906	Lai D	2019-07-03	Addict Biol	Genome-wide association studies of the self-rating of effects of ethanol (SRE).	Number of alcoholic drinks required to feel an effect (first five times drinking)	4,723 European ancestry individuals from 956 families, 1,527 African American individuals from 309 families	306 European ancestry individuals, 169 African American individuals	13q12.12	LINC00621, SGCG	rs4770359-A	0.816	6E-8	(AA)	0.1601938	[0.1-0.22] unit increase	Illumina [up to 15464468] (imputed)	N
764	chr13	23564567	23564568	rs10507319	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q12.12		rs10507319-A	0.03777	6E-6		0.080762	[0.046-0.116] unit decrease	Affymetrix [15580782] (imputed)	N
764	chr13	23574826	23574827	rs117292932	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	13q12.12	AL157931.1	rs117292932-A	0.02	1E-6		10.006	[5.96-14.06] unit increase	Illumina [NR] (imputed)	N
764	chr13	23577826	23577827	rs17078023	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q12.12		rs17078023-A	0.036974	4E-6		0.081923	[0.047-0.117] unit decrease	Affymetrix [15580782] (imputed)	N
765	chr13	23612545	23612546	rs9317418	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.12	SACS	rs9317418-?	NR	6E-7	(carnosine)	0.30463693	[0.18-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
765	chr13	23614654	23614655	rs9578535	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q12.12	NR	rs9578535-?		3E-6				Illumina [4322238] (imputed)	N
765	chr13	23616520	23616521	rs76139902	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q12.12	NR	rs76139902-A	0.03833	6E-12	(DDB1)	0.1389	NR unit increase	Illumina [1671387] (imputed)	N
765	chr13	23657070	23657071	rs112164679	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.12	NR	rs112164679-?	NR	7E-9				Illumina [7760689] (imputed)	N
765	chr13	23657070	23657071	rs112164679	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.12	NR	rs112164679-?	NR	3E-9				Illumina [7760689] (imputed)	N
765	chr13	23692977	23692978	rs4770394	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	13q12.12	SGCG	rs4770394-A	NR	9E-6		1.59	[NR]	Affymetrix [703019]	N
765	chr13	23721339	23721340	rs9510597	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	13q12.12	NR	rs9510597-?	NR	8E-6		0.259564	[0.15-0.37] unit decrease	Affymetrix [656292] (imputed)	N
766	chr13	23724741	23724742	rs8001597	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	13q12.12	NR	rs8001597-?	NR	6E-6		0.270003	[0.15-0.39] unit increase	Affymetrix [656292] (imputed)	N
766	chr13	23724996	23724997	rs1953655	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	13q12.12	NR	rs1953655-?	NR	7E-6		0.269208	[0.15-0.39] unit increase	Affymetrix [656292] (imputed)	N
766	chr13	23744378	23744379	rs9507041	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	13q12.12	intergenic	rs9507041-?	NR	8E-6		1.55	[1.28-1.88]	Illumina [948142]	N
766	chr13	23753806	23753807	rs9510611	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.12	SACS	rs9510611-?	NR	4E-6	(LPC 20:4)	0.18324682	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
766	chr13	23755126	23755127	rs4770403	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	13q12.12	NR	rs4770403-?	NR	6E-6		1.33	[1.17-1.50]	Illumina [463044]	N
766	chr13	23762271	23762272	rs578196	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	13q12.12	SGCG	rs578196-?		7E-6		0.146	[0.083-0.209] unit increase	Affymetrix, Illumina [NR] (imputed)	N
766	chr13	23763281	23763282	rs12874934	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	13q12.12	SGCG	rs12874934-?	NR	9E-6				Illumina [659211]	N
766	chr13	23791774	23791775	rs6490784	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	13q12.12	SGCG	rs6490784-C	0.5921	1E-5		0.1652	[0.092-0.238] unit increase	NR [NR] (imputed)	N
766	chr13	23809366	23809367	rs74754407	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	13q12.12	NR	rs74754407-?	NR	9E-6		0.1193	[0.067-0.172] unit decrease	Illumina [at least 560000] (imputed)	N
766	chr13	23824782	23824783	rs1800351	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA			rs1800351-?	NR	7E-6	(lmp)	1.62		Illumina [11595112] (imputed)	N
766	chr13	23851798	23851799	rs9510661	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	13q12.12	NR	rs9510661-C	NR	6E-6		0.39	[0.21-0.57] unit decrease	NR [5896100] (imputed)	N
767	chr13	23864656	23864657	rs9552911	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	13q12.12	SGCG, SACS	rs9552911-G	0.93	2E-8	(Punjabi Sikhs)	1.49	[1.30-1.72]	Illumina [1232008] (imputed)	N
767	chr13	23903790	23903791	rs4770433	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	13q12.12	SACS	rs4770433-?	0.40	4E-6	(IL12)			Illumina [496032]	N
767	chr13	23937442	23937443	rs2148442	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	13q12.12	NR	rs2148442-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
768	chr13	24042509	24042510	rs10162002	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	13q12.12	TNFRSF19, SACS	rs10162002-A	0.149	5E-6		1.233	[1.13-1.35]	Illumina [870065]	N
768	chr13	24044343	24044344	rs2297585	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	13q12.12	TNFRSF19, SACS	rs2297585-?	NR	4E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
768	chr13	24078354	24078355	rs9510761	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q12.12		rs9510761-T	NR	6E-6		4.5128717	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
768	chr13	24080229	24080230	rs6490802	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q12.12		rs6490802-G	NR	2E-6		4.7792125	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
769	chr13	24127209	24127210	rs1572072	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	13q12.12	TNFRSF19	rs1572072-?	0.74	1E-8		1.19	[1.11-1.27]	Illumina [464328]	N
769	chr13	24152369	24152370	rs3814787	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF19	5,366 Icelandic ancestry individuals	NA	13q12.12		rs3814787-C	0.2834	4E-15		0.160166	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
769	chr13	24152369	24152370	rs3814787	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q12.12	TNFRSF19	rs3814787-G	0.71359375	2E-10	(TNFRSF19, 5131_15_3)	0.16638559	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
769	chr13	24153452	24153453	rs11841272	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	13q12.12	NR	rs11841272-T	0.89	2E-9		0.04	[0.026-0.054] unit decrease	NR [9704453]	N
769	chr13	24153452	24153453	rs11841272	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	13q12.12	NR	rs11841272-T	0.89	9E-8		0.04	[0.026-0.054] unit decrease	NR [9704453]	N
769	chr13	24158671	24158672	rs9553006	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.12	TNFRSF19	rs9553006-A	0.67847	8E-14		0.0148683	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
769	chr13	24165194	24165195	rs7987593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.12		rs7987593-?	NR	9E-19				NR [~ 8900000] (imputed)	N
769	chr13	24205194	24205195	rs9510787	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	13q12.12	TNFRSF19	rs9510787-?	NR	5E-10		1.16		Illumina [Sequenom custom array used in replication] (imputed)	N
769	chr13	24205194	24205195	rs9510787	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	13q12.12	TNFRSF19	rs9510787-G	0.37	2E-9		1.2	[1.10-1.30]	Illumina [464328]	N
769	chr13	24216011	24216012	rs9510795	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	13q12.12	TNFRSF19	rs9510795-A	0.61	4E-6	(AA, additive )	1.23	[1.13-1.34]	Affymetrix [NR]	N
769	chr13	24239824	24239825	rs1575667	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.12	TNFRSF19	rs1575667-A	0.115339	7E-14		0.0217119	[0.016-0.027] unit increase	NR [13737936] (imputed)	N
769	chr13	24242800	24242801	rs7329483	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.12		rs7329483-?	NR	4E-15		0.0241063	[0.018-0.03] unit increase	Affymetrix [20259828] (imputed)	N
769	chr13	24244893	24244894	rs3751358	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	13q12.12	NR	rs3751358-?		3E-7		0.017	[0.01-0.024] unit increase	Illumina [7533529] (imputed)	N
770	chr13	24293858	24293859	rs753955	21725308	Hu Z	2011-07-03	Nat Genet	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	13q12.12	MIPEP	rs753955-G	0.29	2E-12		1.18	[1.13-1.24]	Affymetrix [906703]	N
770	chr13	24296861	24296862	rs7324557	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q12.12	TNFRSF19, MIPEP	rs7324557-G	0.65	8E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
770	chr13	24342933	24342934	rs7327620	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	13q12.12	MIPEP	rs7327620-?	0.0029	9E-6				Illumina [308166]	N
771	chr13	24412832	24412833	rs192378059	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	13q12.12		rs192378059-T	0.0011	4E-8		1.0553	[0.68-1.43] unit increase	Affymetrix, Illumina [NR] (imputed)	N
771	chr13	24421775	24421776	rs76248362	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q12.12	NR	rs76248362-?	NR	5E-6	(AA)	1.3521	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
771	chr13	24423060	24423061	rs61945108	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.12	NR	rs61945108-?	NR	4E-8				Illumina [7760689] (imputed)	N
771	chr13	24426510	24426511	rs8181878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.12		rs8181878-?	NR	2E-8				NR [~ 8900000] (imputed)	N
771	chr13	24430874	24430875	rs7325694	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q12.12	MIPEP	rs7325694-?		3E-6				Illumina [4322238] (imputed)	N
771	chr13	24431808	24431809	rs74657221	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q12.12	NR	rs74657221-?	NR	1E-7	(AA)	1.4229	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
771	chr13	24432466	24432467	rs9318086	21640322	Shi Y	2011-06-02	Am J Hum Genet	Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population.	Myopia (pathological)	419 Han Chinese ancestry high myopia cases, 669 Han Chinese ancestry controls	2,803 East Asian ancestry high myopia cases, 5,642 East Asian ancestry controls	13q12.12	MIPEP, C1QTNF9B-AS1, C1QTNF9B	rs9318086-A	0.44	2E-16		1.32	[1.19-1.46]	Illumina [493947]	N
771	chr13	24436761	24436762	rs9507177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q12.12	NR	rs9507177-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
771	chr13	24443644	24443645	rs74965423	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MIPEP	rs74965423-?	NR	2E-10	(female)	1.81071	[NR] unit decrease	Affymetrix [NR] (imputed)	N
771	chr13	24496041	24496042	rs17079585	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Glomerular load of uric acid	768 Hispanic children from 260 families		13q12.12	ANKRD20A19P	rs17079585-A	0.007	6E-7		1.3	[0.79-1.81] unit decrease	Illumina [899892]	N
771	chr13	24496041	24496042	rs17079585	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Creatinine clearance	768 Hispanic children from 260 families		13q12.12	ANKRD20A19P	rs17079585-A	0.007	3E-7		1.53	[0.94-2.12] unit decrease	Illumina [899892]	N
771	chr13	24504954	24504955	rs2765086	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	13q12.12	NR	rs2765086-G	0.94	6E-6	(females)	3.86	[NR] kg decrease	Illumina [318237]	N
772	chr13	24533605	24533606	rs17079653	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Tumor necrosis factor receptor II (red blood cell fatty acid level interaction)	2,703 individuals	NA	13q12.12	LOC105370115, ANKRD20A19P, SPATA13	rs17079653-?	0.023286181	3E-8	(OA)	15.490697	[10.03-20.95] unit decrease	Affymetrix [2500000] (imputed)	N
772	chr13	24598383	24598384	rs17079773	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	13q12.12	intergenic	rs17079773-?	NR	5E-6	(binary)			Perlegen [429981]	N
772	chr13	24614397	24614398	rs746798	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.12	LOC387911	rs746798-?	NR	9E-6	(lactate)	0.25559363	[0.14-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
772	chr13	24623387	24623388	rs4769313	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebral cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	13q12.12	SPATA13	rs4769313-?	NR	7E-6				Illumina [at least 653030]	N
772	chr13	24627617	24627618	rs17429538	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q12.12	NR	rs17429538-?	NR	6E-6	(AA)	37.08	[34.77-39.39]	Illumina [905956]	N
773	chr13	24654227	24654228	rs17079928	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	13q12.12	SPATA13	rs17079928-?	0.82	6E-6	(CL_CLP)	1.33	[1.52-1.18]	Illumina [NR]	N
773	chr13	24658355	24658356	rs9805786	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	13q12.12	SPATA13	rs9805786-?	NR	7E-6		1.65	[1.33-2.05]	Illumina [876476]	N
773	chr13	24714766	24714767	rs1033849	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	13q12.12	NR	rs1033849-?	NR	8E-9	(Epidermal growth factor receptor)			Illumina [514227]	N
774	chr13	24774646	24774647	rs9511143	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	13q12.12	SPATA13	rs9511143-?	NR	3E-8		1.0869565	[1.05-1.12]	Illumina [13676411] (imputed)	N
774	chr13	24776195	24776196	rs7318607	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	13q12.12	SPATA13	rs7318607-A	0.642794473944858	8E-17		0.0409	[0.031-0.05] SD increase	Illumina [22400000] (imputed)	N
774	chr13	24782079	24782080	rs7329958	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	13q12.12	SPATA13	rs7329958-T	0.35	7E-14		0.044	[0.032-0.056] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
774	chr13	24786355	24786356	rs7333647	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	13q12.12	SPATA13	rs7333647-C	0.287791	6E-35		0.12441419	[0.1-0.14] unit increase	Affymetrix [7288503] (imputed)	N
774	chr13	24786384	24786385	rs7327883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	13q12.12		rs7327883-T	NR	2E-33		0.1197	[0.1-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
774	chr13	24786575	24786576	rs9511151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	13q12.12		rs9511151-A	NR	3E-20		0.0976	[0.077-0.118] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
774	chr13	24786576	24786577	rs9507287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q12.12		rs9507287-?	NR	8E-42				NR [~ 8900000] (imputed)	N
774	chr13	24786576	24786577	rs9507287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	13q12.12		rs9507287-?	NR	7E-16				NR [~ 8900000] (imputed)	N
774	chr13	24786914	24786915	rs17364832	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	13q12.12	SPATA13	rs17364832-G	0.274	2E-23		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
774	chr13	24795488	24795489	rs715921	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	13q12.12	SPATA13	rs715921-A	0.31	8E-7	(No asthma)	1.2	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
774	chr13	24828849	24828850	rs75439322	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q12.12	SPATA13	rs75439322-G	0.910832	8E-25		0.0334372	[0.027-0.04] unit decrease	NR [13737936] (imputed)	N
774	chr13	24828849	24828850	rs75439322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.12		rs75439322-?	NR	2E-25				NR [~ 8900000] (imputed)	N
774	chr13	24828849	24828850	rs75439322	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.12		rs75439322-?	NR	7E-27		0.0383681	[0.031-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
774	chr13	24871091	24871092	rs9580924	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.12		rs9580924-?	NR	3E-13		0.0236556	[0.017-0.03] unit increase	Affymetrix [20259828] (imputed)	N
774	chr13	24876651	24876652	rs12584323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q12.12	SPATA13, RP11-307N16.6	rs12584323-A	0.228583	1E-10		0.017433887	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr13	24877441	24877442	rs9580930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q12.12	SPATA13	rs9580930-A	0.330934	2E-11		0.016040612	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr13	24881183	24881184	rs6583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q12.12		rs6583-A	NR	3E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
774	chr13	24885000	24885001	rs181581149	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL359736.1	rs181581149-?	NR	1E-9		1.54211	[NR] unit decrease	Affymetrix [NR] (imputed)	N
775	chr13	24938423	24938424	rs376435808	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	13q12.12	NR	rs376435808-A		1E-6		0.6085	[0.36-0.86] unit increase	Illumina [12759548] (imputed)	N
775	chr13	24980948	24980949	rs1816752	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.12	PARP4	rs1816752-G	0.332	2E-6	(Urinary free norepinephrine )	0.05	[NR] nmol/d increase	Illumina [899892]	N
775	chr13	24986389	24986389	rs201073821	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q12.12	NR	rs201073821-TG	0.0485	8E-6	(EA)	0.0738	[0.041-0.106] unit increase	Illumina [~ 11800000] (imputed)	N
776	chr13	25074489	25074490	rs9578751	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	13q12.12	PARP4	rs9578751-?		1E-7				Illumina [301908]	N
776	chr13	25082629	25082630	rs9581094	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	13q12.12	PARP4	rs9581094-?	0.15	7E-7	(Recessive)	1.7	[1.38-2.10]	Affymetrix [319222]	N
777	chr13	25169206	25169207	rs6490957	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	13q12.12	TPTE2P6	rs6490957-?	0.966536	3E-6		5.0805006	[2.58-10]	Affymetrix, Illumina [NR] (imputed)	N
777	chr13	25247285	25247286	rs1530530	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.12	ATP12A	rs1530530-G	0.068	6E-7	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
777	chr13	25251847	25251848	rs61948063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q12.12		rs61948063-G	NR	9E-9		0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
777	chr13	25257916	25257917	rs55641580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	13q12.12		rs55641580-T	NR	5E-9		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
777	chr13	25257916	25257917	rs55641580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	13q12.12		rs55641580-T	NR	4E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
777	chr13	25257916	25257917	rs55641580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q12.12		rs55641580-?	NR	7E-12				NR [~ 8900000] (imputed)	N
777	chr13	25257916	25257917	rs55641580	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	13q12.12	ATP12A	rs55641580-C	0.874	5E-11		0.1745	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
777	chr13	25282818	25282819	rs61948108	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	13q12.12	ATP12A	rs61948108-T	0.11	4E-10		1.55	NR	Illumina [8763019] (imputed)	N
778	chr13	25314625	25314626	rs79709413	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	13q12.12	intergenic	rs79709413-?		8E-7		0.95	[0.58-1.32] unit increase	Illumina [8426597] (imputed)	N
778	chr13	25316927	25316928	rs8001699	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q12.12	Intergenic	rs8001699-G	NR	7E-6	(women)	0.0304099	[0.017-0.044] unit decrease	Illumina [13520550] (imputed)	N
778	chr13	25411570	25411571	rs149381084	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	13q12.12		rs149381084-A	0.01863	5E-6		2.317	[1.615-3.323]	Affymetrix [7975321] (imputed)	N
779	chr13	25530142	25530143	rs140334137	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	13q12.13	NR	rs140334137-?	NR	9E-6		0.149	[0.083-0.215] unit decrease	Illumina [at least 560000] (imputed)	N
779	chr13	25533830	25533831	rs2483374	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.13	TPTE2P1	rs2483374-C	0.386	5E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
780	chr13	25564325	25564326	rs9511572	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	13q12.13	NR	rs9511572-C	0.48	8E-6				Illumina [4877242] (imputed)	N
780	chr13	25677508	25677509	rs12864436	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	13q12.13	NR	rs12864436-?		6E-7				Illumina [892589]	N
780	chr13	25681111	25681112	rs7989887	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	13q12.13	PABPC3	rs7989887-?		7E-7	(French Canadians)	2.0145044		Illumina [7614484] (imputed)	N
781	chr13	25716499	25716500	rs17081845	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	13q12.13	NR	rs17081845-A	0.1396	2E-6		0.2055	[0.12-0.29] unit increase	Illumina [10677593] (imputed)	N
781	chr13	25766541	25766542	rs11617767	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	13q12.13	NR	rs11617767-?	NR	6E-6		0.0671	[0.038-0.096] unit increase	Illumina [at least 560000] (imputed)	N
781	chr13	25784081	25784082	rs9581297	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	13q12.13	MTMR6	rs9581297-T	0.2477	7E-9	(Proline)	0.0902	[0.058-0.123] unit increase	Illumina [~ 47000000] (imputed)	N
781	chr13	25820100	25820101	rs9553567	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q12.13	MTMR6	rs9553567-T	0.160184	3E-8		0.0151049	[0.0098-0.0204] unit decrease	Affymetrix [NR] (imputed)	N
782	chr13	25846199	25846200	rs9645860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q12.13		rs9645860-?	NR	6E-8				NR [~ 8900000] (imputed)	N
783	chr13	25964789	25964790	rs9553602	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q12.13	NR	rs9553602-A	0.379	6E-6	(IFNalpha_CXCL10_of_CD4p_T)			Illumina [5084123] (imputed)	N
783	chr13	25998381	25998382	rs7985867	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness	682 Black non-Hispanic HIV-positive women, 288 Black non-Hispanic HIV-negative women	NA	13q12.13	ATP8A2	rs7985867-T	NR	7E-6		0.01279	[NR] unit decrease	Illumina [1124301]	N
783	chr13	26007976	26007977	rs7322916	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	13q12.13	ATP8A2	rs7322916-G	0.501	8E-7		0.089	[0.054-0.124] unit increase	Illumina [6150213] (imputed)	N
783	chr13	26037959	26037960	rs4770837	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q12.13	NR	rs4770837-?	NR	5E-6		1.246	[NR]	Affymetrix [722112]	N
784	chr13	26105276	26105277	rs188091470	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	13q12.13		rs188091470-G	NR	8E-6		3.5414	[2.02-5.07] unit increase	Illumina [NR] (imputed)	N
785	chr13	26242504	26242505	rs7335338	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	13q12.13	ATP8A2	rs7335338-A	0.9	2E-8	(palmitic acid)	1.13	[-0.8692-3.1292] unit increase	Illumina [~ 932000] (imputed)	N
785	chr13	26242504	26242505	rs7335338	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	13q12.13	ATP8A2	rs7335338-A	0.9	2E-6	(palmitic acid)			Illumina [~ 932000]	N
786	chr13	26351861	26351862	rs9511923	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	13q12.13		rs9511923-G	NR	1E-6		0.40319	[0.25-0.56] unit increase	Illumina [NR] (imputed)	N
786	chr13	26375045	26375046	rs1326116	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	13q12.13	ATP8A2	rs1326116-?	NR	2E-6		2.77	[1.79-4.27]	Illumina [498081]	N
786	chr13	26447211	26447212	rs306398	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.13		rs306398-A	0.2	5E-13		7.23	z score increase	Affymetrix [9061022] (imputed)	N
786	chr13	26459270	26459271	rs56004985	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	13q12.13		rs56004985-?	NR	2E-9				NR [9705931] (imputed)	N
786	chr13	26459786	26459787	rs9507595	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q12.13		rs9507595-C	0.22	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
786	chr13	26459786	26459787	rs9507595	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q12.13	NR	rs9507595-C	0.2424	8E-11				NR [9056863] (imputed)	N
787	chr13	26504394	26504395	rs11617886	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.13	TMEM46	rs11617886-?	NR	6E-6	(TAG 54:3)	0.16841422	[0.095-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
787	chr13	26519044	26519045	rs1041052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.13	TMEM46	rs1041052-?	NR	2E-7	(TAG 54:4)	0.18124928	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
787	chr13	26533948	26533949	rs80187936	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q12.13	NR	rs80187936-C	NR	7E-6	(LME model)	1.0617	[0.6-1.53] unit decrease	NR [NR] (imputed)	N
787	chr13	26557725	26557726	rs4770891	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q12.13	NR	rs4770891-?	NR	1E-7		0.0276	[0.017-0.038] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
787	chr13	26581200	26581201	rs7329196	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	13q12.13	ATP8A2	rs7329196-C	0.15257	2E-6		1.555	NR	Illumina [at least 870261] (imputed)	N
787	chr13	26581200	26581201	rs7329196	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	13q12.13	ATP8A2	rs7329196-C	0.15257	3E-6		1.699	NR	Illumina [at least 870261] (imputed)	N
787	chr13	26604938	26604939	rs8000690	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.13	NR	rs8000690-?	NR	3E-36				Affymetrix [NR]	N
788	chr13	26639395	26639396	rs7491901	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	13q12.13	NR	rs7491901-?	NR	5E-6		1.8016	[1.03-2.57] unit increase	Illumina [5779266] (imputed)	N
788	chr13	26639395	26639396	rs7491901	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	13q12.13	NR	rs7491901-?	NR	4E-6		1.8016	[1.03-2.57] unit increase	Illumina [5779266] (imputed)	N
788	chr13	26641047	26641048	rs188130210	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	13q12.13	NR	rs188130210-?	NR	5E-6		1.0005	[0.57-1.43] unit increase	NR [13958389] (imputed)	N
788	chr13	26710962	26710963	rs141017693	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ATP8A2P3	rs141017693-?	NR	7E-9		3.68704	[NR] unit decrease	Affymetrix [NR] (imputed)	N
788	chr13	26724327	26724328	rs17511627	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	13q12.13	intergenic	rs17511627-C	0.17	5E-6		1.75	[1.37-2.22]	Illumina [2505093] (imputed)	N
788	chr13	26731713	26731714	rs4769475	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	13q12.13	intergenic	rs4769475-?		6E-6				Affymetrix, Illumina [6750581] (imputed)	N
789	chr13	26759883	26759884	rs509915	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	13q12.13	RNF6	rs509915-C	0.07	3E-6	(Women)	0.02165882	[0.013-0.031] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
789	chr13	26776998	26776999	rs34584161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q12.13		rs34584161-G	NR	6E-17		0.057	[0.044-0.07] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
789	chr13	26776998	26776999	rs34584161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q12.13		rs34584161-G	NR	1E-16		0.0669	[0.051-0.083] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
789	chr13	26776998	26776999	rs34584161	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	13q12.13	NR	rs34584161-G	NR	2E-15		0.0234	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
789	chr13	26776998	26776999	rs34584161	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q12.13	NR	rs34584161-G	0.2394	4E-22		0.0521	[0.042-0.063] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
789	chr13	26776998	26776999	rs34584161	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q12.13	NR	rs34584161-G	0.2837	2E-37		0.0565	[0.048-0.065] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
789	chr13	26776998	26776999	rs34584161	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q12.13	RNF6	rs34584161-A	0.7598	2E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
789	chr13	26777082	26777083	rs9581587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q12.13		rs9581587-C	0.454359475	4E-15		0.07360905	[0.055-0.092] unit decrease	Illumina [13429769] (imputed)	N
789	chr13	26777082	26777083	rs9581587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q12.13		rs9581587-C	0.449795151	1E-15		0.080522835	[0.061-0.1] unit decrease	Illumina [13134967] (imputed)	N
789	chr13	26781367	26781367	rs568052023	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q12.13	RNF6	rs568052023-C	0.581	3E-22		1.07	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
789	chr13	26781368	26781368	rs35773834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	13q12.13		rs35773834-CA	NR	1E-14		0.0234	[0.018-0.029] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
789	chr13	26781368	26781368	rs35773834	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	13q12.13		rs35773834-CA	0.429659514	8E-14		0.93660927	[0.920659551-0.952835276]	Illumina [8919992] (imputed)	N
789	chr13	26781527	26781528	rs10507349	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	13q12.13	RNF6	rs10507349-G	0.55	1E-15		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
789	chr13	26781527	26781528	rs10507349	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q12.13	RNF6	rs10507349-G	0.78	1E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
789	chr13	26781527	26781528	rs10507349	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q12.13	RNF6	rs10507349-A	0.2247	2E-6	(EA)	0.0561	[0.033-0.079] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
789	chr13	26781527	26781528	rs10507349	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	13q12.13	RNF6	rs10507349-G		2E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [2500000] (imputed)	N
789	chr13	26784938	26784939	rs9581591	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	13q12.13	NR	rs9581591-C	0.4483	1E-15		0.0698	[0.053-0.087] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
789	chr13	26817461	26817461	rs752075701	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q12.13	NR	rs752075701-CA	0.23164399999999996	1E-10		0.00659784	[0.0046-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
789	chr13	26817461	26817461	rs752075701	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q12.13	NR	rs752075701-CA	0.23164399999999996	1E-6		0.00567043	[0.0034-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
790	chr13	26911111	26911112	rs17083838	26029870	Ye Z	2015-06-01	Nat Genet	Common variants at 10p12.31, 10q21.1 and 13q12.13 are associated with sporadic pituitary adenoma.	Sporadic pituitary adenoma	771 Han Chinese cases, 2,788 Han Chinese controls	2,542 Han Chinese cases, 3,620 Han Chinese controls	13q12.13	CDK8, RNF6, WASF3	rs17083838-A	0.104	2E-8		1.37	[1.23-1.53]	Illumina [720770]	N
790	chr13	26923564	26923565	rs3736995	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	13q12.13	CDK8	rs3736995-?		3E-7	(IFN gamma response)			Illumina [NR]	N
791	chr13	27015150	27015151	rs944694	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q12.13	Intergenic	rs944694-A	0.3605	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
791	chr13	27049615	27049616	rs61944841	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q12.13	intergenic	rs61944841-A	0.4138	4E-37		0.0253	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
791	chr13	27049615	27049616	rs61944841	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q12.13	NR	rs61944841-A	0.413453	2E-11		0.0482738	[0.034-0.062] unit increase	Affymetrix [17914406] (imputed)	N
791	chr13	27061495	27061500	rs71218579	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	13q12.13	WASF3	rs71218579-A	0.68	5E-6		1.22	[1.12-1.33]	Affymetrix, Illumina [up to 7729175] (imputed)	N
791	chr13	27092007	27092008	rs17084283	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.13	NR	rs17084283-?	NR	2E-10				Affymetrix [NR]	N
791	chr13	27115423	27115424	rs1331012	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	13q12.13	NR	rs1331012-?	NR	8E-8				NR [NR] (imputed)	N
791	chr13	27115423	27115424	rs1331012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q12.13		rs1331012-?	NR	3E-10				NR [~ 8900000] (imputed)	N
791	chr13	27115423	27115424	rs1331012	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	13q12.13	WASF3	rs1331012-G	0.7297	2E-9		0.2043	[0.14-0.27] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
791	chr13	27124359	27124360	rs500321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	13q12.13	NR	rs500321-T	0.736	1E-9		0.00905072	[0.0061-0.012] unit decrease	NR [~ 9732723] (imputed)	N
791	chr13	27124359	27124360	rs500321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	13q12.13	NR	rs500321-T	0.736	5E-9		0.009669361	[0.0064-0.0129] unit decrease	NR [~ 10000000] (imputed)	N
792	chr13	27202578	27202579	rs36094398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q12.13	WASF3-AS1, WASF3	rs36094398-C	0.311957	2E-9		0.014533094	[0.0098-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr13	27271369	27271370	rs1887596	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	13q12.13	NR	rs1887596-G	0.3226	8E-8		0.1741	[0.11-0.24] unit increase	Illumina [10677593] (imputed)	N
793	chr13	27294637	27294638	rs9581731	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	13q12.13	WASF3	rs9581731-T	0.7076	1E-9		0.97929204	[NR]	Illumina [12493444] (imputed)	N
793	chr13	27326344	27326345	rs146034499	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	13q12.13	GPR12	rs146034499-A	0.0012	3E-9		5.92	[3.29-10.65]	Illumina [11310926] (imputed)	N
793	chr13	27349133	27349134	rs17454013	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	13q12.13	NR	rs17454013-A	NR	2E-6		3710.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
793	chr13	27352677	27352678	rs9507791	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q12.13	GPR12	rs9507791-G	0.212936	4E-9		0.00988442	[0.0066-0.0132] unit increase	Affymetrix [12370749]	N
793	chr13	27376973	27376974	rs7330390	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	13q12.13	GPR12, USP12	rs7330390-C	0.29	5E-6	(Profile nasal area)	0.014	[NR] unit decrease	Affymetrix [311944]	N
793	chr13	27386030	27386031	rs17084678	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.13	WASF3	rs17084678-?	NR	5E-6	(TAG 54:8)	0.7642434	[0.44-1.09] unit increase	Affymetrix [at least 2500000] (imputed)	N
794	chr13	27409627	27409628	rs138014219	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Leg fat mass	2,109 White British ancestry male individuals	NA	13q12.13		rs138014219-T	NR	3E-8		2194.3	g increase	NR [6137607] (imputed)	N
794	chr13	27415672	27415673	rs9319321	19187332	Kim SH	2009-02-01	Clin Exp Allergy	Alpha-T-catenin (CTNNA3) gene was identified as a risk variant for toluene diisocyanate-induced asthma by genome-wide association analysis.	Asthma (toluene diisocyanate-induced)	84 Korean ancestry cases, 263 Korean ancestry controls	NA	13q12.13	intergenic	rs9319321-T	0.29	3E-6		5.2	[2.47-10.92]	Affymetrix [312978]	N
794	chr13	27470379	27470380	rs7982187	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Histidine meal response (OrNLSr)	4,292 individuals	NA	13q12.13		rs7982187-G	0.242971158	1E-8		0.147019	[0.097-0.197] unit increase	Illumina [7701709] (imputed)	N
795	chr13	27528346	27528347	rs12585310	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q12.13	NR	rs12585310-?	NR	5E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
795	chr13	27531266	27531267	rs17085007	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	13q12.13	Intergenic	rs17085007-?		1E-14				Illumina [9578670] (imputed)	N
795	chr13	27531266	27531267	rs17085007	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	13q12.13	Intergenic	rs17085007-?		7E-10				Illumina [9725440] (imputed)	N
795	chr13	27531266	27531267	rs17085007	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	13q12.13	intergenic	rs17085007-?	NR	2E-13	(subset analysis)			Illumina [130052]	N
795	chr13	27531266	27531267	rs17085007	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q12.13	NR	rs17085007-G	0.1799	1E-16	(EA)	1.1413064	[1.11-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
795	chr13	27531266	27531267	rs17085007	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	810 Korean ancestry cases, 1709 Korean ancestry controls	13q12.13	intergenic	rs17085007-C	0.17	3E-7		1.37	[1.22-1.55]	Illumina [581060]	N
795	chr13	27531266	27531267	rs17085007	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	13q12.13	Intergernic	rs17085007-C	0.18	8E-6		1.4	[1.21-1.63]	Illumina [581060]	N
795	chr13	27531266	27531267	rs17085007	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q12.13	intergenic	rs17085007-C	0.183	3E-19		1.106	[1.065-1.147]	Affymetrix, Illumina [1230000] (imputed)	N
795	chr13	27531266	27531267	rs17085007	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	13q12.13	intergenic	rs17085007-C	0.18	1E-16		1.16	[1.10-1.21]	Affymetrix, Illumina [~ 1100000] (imputed)	N
795	chr13	27531266	27531267	rs17085007	19915573	Asano K	2009-11-15	Nat Genet	A genome-wide association study identifies three new susceptibility loci for ulcerative colitis in the Japanese population.	Ulcerative colitis	376 Japanese ancestry cases, 934 Japanese ancestry controls	376 Japanese ancestry cases, 1,097 Japanese ancestry controls	13q12.13	USP12	rs17085007-C	0.23	7E-8		1.35	[1.21-1.51]	Illumina [513923]	N
795	chr13	27572293	27572294	rs77743965	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	13q12.13	NR	rs77743965-C	0.078932	3E-6		1.2075597	[0.73-1.68] unit decrease	Illumina [at least 621854] (imputed)	N
795	chr13	27593543	27593544	rs137996940	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	13q12.13	NR	rs137996940-?	NR	9E-6		0.1414	[0.08-0.203] unit decrease	Illumina [at least 560000] (imputed)	N
795	chr13	27595814	27595815	rs61945053	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	13q12.13	NR	rs61945053-?	NR	2E-7	(AA)	24.102747	[15.19-33.01] unit decrease	Affymetrix [at least 600000] (imputed)	N
795	chr13	27598825	27598826	rs3123308	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	13q12.13	USP12	rs3123308-A	0.4302	8E-6				Illumina [4404269] (imputed)	N
795	chr13	27600647	27600648	rs61945055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q12.13		rs61945055-G	NR	9E-13		0.0224	[0.016-0.028] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
795	chr13	27600647	27600648	rs61945055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.13		rs61945055-G	0.160475	2E-11		0.020294877	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
795	chr13	27603768	27603769	rs9581801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.13		rs9581801-C	0.161423	4E-11		0.019966392	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
795	chr13	27621984	27621985	rs945177	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	13q12.13	GPR12, USP12	rs945177-A	0.02	1E-6	(European)	14.7		Illumina [7993459] (imputed)	N
796	chr13	27662099	27662100	rs56940748	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	13q12.13		rs56940748-G	0.970249	8E-8		0.0449343	[0.029-0.061] unit decrease	Illumina [13900000] (imputed)	N
796	chr13	27757374	27757375	rs7999846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.13	NR	rs7999846-T	NR	8E-20		0.0412	[0.032-0.05] unit increase	Affymetrix [9000000] (imputed)	N
796	chr13	27757374	27757375	rs7999846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q12.13	NR	rs7999846-T	NR	3E-11		0.03	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
796	chr13	27757374	27757375	rs7999846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q12.13	NR	rs7999846-T	NR	2E-11		0.0302	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr13	27778796	27778797	rs9512578	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	13q12.2	RPL21	rs9512578-A	0.917	7E-7		0.0025	[0.0013-0.0037] unit decrease	Affymetrix [NR] (imputed)	N
796	chr13	27784872	27784873	rs9512579	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	13q12.2	USP12, RPL21	rs9512579-A	0.081	7E-9		5.8	z-score increase	Affymetrix [4314223] (imputed)	N
797	chr13	27792616	27792617	rs2148758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q12.2		rs2148758-C	NR	2E-12		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
797	chr13	27801207	27801208	rs7318048	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	13q12.2	LINC00412	rs7318048-T	0.0764422	7E-26		0.0102583	[0.0084-0.0122] unit increase	Affymetrix [13995440] (imputed)	N
797	chr13	27879525	27879526	rs10507380	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.2		rs10507380-A	0.8755	2E-14		0.24525899	[0.18-0.31] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
797	chr13	27879525	27879526	rs10507380	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.2		rs10507380-A	0.8754	5E-10		0.13606298	[0.089-0.183] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
797	chr13	27879525	27879526	rs10507380	17903306	Newton-Cheh C	2007-09-19	BMC Med Genet	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Electrocardiographic traits	1,951 European ancestry individuals from 355 families	NA	13q12.2	RPL21	rs10507380-?	NR	8E-6	(QT interval)			Affymetrix [70897]	N
797	chr13	27900533	27900534	rs1333348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA			rs1333348-?	NR	5E-10				NR [~ 8900000] (imputed)	N
797	chr13	27904649	27904650	rs138110118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q12.2		rs138110118-G	NR	2E-10		0.0228	[0.016-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
797	chr13	27908925	27908926	rs1333351	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q12.2		rs1333351-T	0.406	1E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
797	chr13	27909327	27909328	rs58413920	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	13q12.2	NR	rs58413920-A	0.012	2E-9		0.26	[0.18-0.34] unit increase	Illumina [6374524] (imputed)	N
797	chr13	27917008	27917009	rs7995537	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	13q12.2	NR	rs7995537-G	0.223	8E-7	(Bray-Curtis metric)	4.8014245	NR z-score increase	Illumina [5293637] (imputed)	N
798	chr13	27920610	27920611	rs9512637	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q12.2	intergenic	rs9512637-C	0.32	1E-7		0.105	[NR] unit decrease	Illumina [~ 300000]	N
798	chr13	27925495	27925496	rs7989098	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q12.2	GTF3A	rs7989098-T	0.258487	1E-13		0.0120926	[0.0089-0.0153] unit decrease	Affymetrix [12370749]	N
798	chr13	27934937	27934938	rs9512650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	13q12.2		rs9512650-A	NR	2E-9		0.0332	[0.022-0.044] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
798	chr13	27950540	27950541	rs118068052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q12.2	NR	rs118068052-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
798	chr13	27961582	27961583	rs67227314	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	13q12.2	NR	rs67227314-T	NR	7E-6		1.3847		Affymetrix [8183964] (imputed)	N
798	chr13	27990621	27990622	rs1218829	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.2	NR	rs1218829-?	NR	6E-20				Affymetrix [NR]	N
798	chr13	27997304	27997305	rs2146819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q12.2		rs2146819-?	NR	1E-15				NR [~ 8900000] (imputed)	N
798	chr13	27998599	27998600	rs11619722	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q12.2	NA	rs11619722-T	0.7059	2E-15		0.0167	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
798	chr13	28011962	28011963	rs1218822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q12.2		rs1218822-?	NR	4E-17				NR [~ 8900000] (imputed)	N
798	chr13	28012526	28012527	rs9512696	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	13q12.2		rs9512696-G	0.66	5E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
798	chr13	28012526	28012527	rs9512696	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	13q12.2		rs9512696-G	0.66	9E-10				NR [NR] (imputed)	N
798	chr13	28012526	28012527	rs9512696	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	13q12.2		rs9512696-G	0.66	9E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
798	chr13	28012526	28012527	rs9512696	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	13q12.2		rs9512696-G	0.66	1E-13		0.012	% increase	NR [NR] (imputed)	N
798	chr13	28012526	28012527	rs9512696	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q12.2	NR	rs9512696-?	NR	1E-7		0.12311	[0.078-0.169] unit increase	Affymetrix [7794483] (imputed)	N
798	chr13	28013500	28013501	rs7992832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q12.2		rs7992832-?	NR	2E-9				NR [~ 8900000] (imputed)	N
798	chr13	28017781	28017782	rs9581854	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q12.2	NR	rs9581854-C	NR	3E-11		0.024	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
798	chr13	28020179	28020180	rs4771122	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	13q12.2	MTIF3, GTF3A	rs4771122-G	0.24	9E-10		0.09	[0.03-0.15] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
798	chr13	28022616	28022617	rs17085633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs17085633-C	0.51808	8E-12				Affymetrix, Illumina [22063850] (imputed)	N
798	chr13	28022913	28022914	rs4771123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q12.2		rs4771123-T	NR	4E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
798	chr13	28027713	28027714	rs9581857	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and perceptual aberration scale)	3,824 Finnish ancestry individuals	NA	13q12.2	MTIF3	rs9581857-?		7E-7				Illumina [~ 9600000] (imputed)	N
798	chr13	28035443	28035443	rs145085227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q12.2	NR	rs145085227-I	0.480748	9E-15		0.016382	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
798	chr13	28036061	28036062	rs1967772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q12.2		rs1967772-A	NR	7E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
798	chr13	28036061	28036062	rs1967772	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q12.2	MTIF3	rs1967772-G	0.714944	8E-13		0.0109369	[0.0079-0.0139] unit increase	Affymetrix [12370749]	N
798	chr13	28036061	28036062	rs1967772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q12.2	NR	rs1967772-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
798	chr13	28036061	28036062	rs1967772	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q12.2	NA	rs1967772-A	0.2719	9E-20		0.0173	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
798	chr13	28036061	28036062	rs1967772	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q12.2	NA	rs1967772-A	0.2719	9E-20		0.0173	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
798	chr13	28041614	28041615	rs9512706	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	13q12.2	MTIF3	rs9512706-?	NR	4E-6				Affymetrix [5908111] (imputed)	N
798	chr13	28041614	28041615	rs9512706	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	13q12.2	MTIF3	rs9512706-?	NR	3E-6				Affymetrix [5908111] (imputed)	N
798	chr13	28047268	28047269	rs1006353	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q12.2	MTIF3, LNX2	rs1006353-G	0.73	2E-10		0.016	[0.012-0.02] unit decrease	Illumina [6108953] (imputed)	N
798	chr13	28048749	28048750	rs150558112	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	13q12.2	MTIF3	rs150558112-A	NR	1E-6				Illumina [up to 3923932] (imputed)	N
798	chr13	28049183	28049184	rs9554048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q12.2		rs9554048-A	0.543871	1E-13		0.01664027	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr13	28058403	28058404	rs7336332	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	13q12.2	NR	rs7336332-G	0.15	1E-6		4.01	[2.40-5.62] percentage SD increase	Illumina [305846]	N
799	chr13	28077143	28077144	rs9512730	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	13q12.2	intergenic	rs9512730-?	0.26	5E-6		1.52	[NR]	Affymetrix [492900]	N
799	chr13	28109901	28109902	rs752331861	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q12.2	LNX2	rs752331861-A	0.859395	1E-10		0.0202774	[0.014-0.026] unit decrease	NR [16516521] (imputed)	N
799	chr13	28109960	28109961	rs75783371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.2		rs75783371-?	NR	1E-11				NR [~ 8900000] (imputed)	N
799	chr13	28158034	28158035	rs76900683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q12.2	LNX2	rs76900683-C	0.048495	9E-16		0.04214188	[0.032-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr13	28158034	28158035	rs76900683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q12.2	LNX2	rs76900683-C	0.048484	2E-24		0.05345791	[0.043-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr13	28158034	28158035	rs76900683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs76900683-G	0.953459	1E-27				Affymetrix, Illumina [17210439] (imputed)	N
799	chr13	28158034	28158035	rs76900683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q12.2	NR	rs76900683-G	0.951834	8E-31		0.05206	[0.043-0.061] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
799	chr13	28158034	28158035	rs76900683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q12.2	LNX2	rs76900683-C	0.0483	1E-10		0.05435389	[0.038-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr13	28158034	28158035	rs76900683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q12.2	LNX2	rs76900683-C	0.0483	2E-13		0.06207537	[0.046-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr13	28158228	28158229	rs9512755	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	13q12.2	LNX2	rs9512755-?		4E-6				Affymetrix, Illumina [1348798]	N
800	chr13	28197435	28197436	rs7097	21471979	Kumar V	2011-04-07	J Hum Genet	Common variants on 14q32 and 13q12 are associated with DLBCL susceptibility.	Large B-cell lymphoma	74 Japanese ancestry cases, 934 Japanese ancestry controls	325 Japanese ancestry cases, 3,309 Japanese ancestry controls	13q12.2	LNX2	rs7097-?	NR	7E-6		1.44	[1.23-1.67]	Illumina [444361]	N
800	chr13	28202050	28202051	rs77734239	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q12.2	Intergenic	rs77734239-A	0.0684	3E-8	(MTAG)	0.0182	[0.012-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
800	chr13	28236974	28236975	rs492553	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	13q12.2		rs492553-?	NR	8E-9		0.7834	[0.52-1.05] unit increase	Affymetrix [NR] (imputed)	N
800	chr13	28245126	28245127	rs9319382	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q12.2	NR	rs9319382-C	0.6786	3E-8		0.0276	[0.018-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
800	chr13	28309645	28309646	rs9512841	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	13q12.2	GSX1	rs9512841-G	0.53	2E-6		0.13	[0.071-0.189] unit increase	Illumina [7411206] (imputed)	N
801	chr13	28355124	28355125	rs765061	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	13q12.2	intergenic	rs765061-A	0.166534	5E-6	(omega-3 PUFA)			Illumina [621723]	N
801	chr13	28360486	28360487	rs1923834	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	13q12.2	GSX1	rs1923834-G	0.77	5E-6	(Dominant model)	3.236	[1.823-5.744]	Illumina [733202]	N
801	chr13	28361470	28361471	rs112644024	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.2	NR	rs112644024-?	NR	2E-8				Illumina [7760689] (imputed)	N
801	chr13	28393339	28393340	rs9554165	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q12.2	AS1, PDX1	rs9554165-G	0.630561	5E-9		0.0126649	[0.0084-0.017] unit increase	NR [16516521] (imputed)	N
801	chr13	28395296	28395297	rs76750172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q12.2		rs76750172-T	NR	6E-9		0.0314	[0.021-0.042] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
801	chr13	28395296	28395297	rs76750172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.2		rs76750172-?	NR	5E-15				NR [~ 8900000] (imputed)	N
801	chr13	28401577	28401578	rs17752257	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs17752257-C	0.98	5E-10				Affymetrix [10369434] (imputed)	N
801	chr13	28429737	28429738	rs9512900	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	13q12.2	GSX1, PDX1	rs9512900-C	0.37	9E-6				Perlegen [378332]	N
801	chr13	28437256	28437257	rs1778790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q12.2		rs1778790-T	NR	4E-9		0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
801	chr13	28437256	28437257	rs1778790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q12.2		rs1778790-T	NR	5E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
801	chr13	28439388	28439389	rs1970619	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	13q12.2	GSX1, PDX1	rs1970619-T	0.4	4E-12		6.93	z-score increase	Affymetrix [4312306] (imputed)	N
801	chr13	28439974	28439975	rs2185965	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.2	NR	rs2185965-T	NR	1E-10		0.0246	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
801	chr13	28441189	28441190	rs1756955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	13q12.2	NR	rs1756955-A	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28443642	28443643	rs1778792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q12.2		rs1778792-A	NR	1E-9		0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
802	chr13	28443642	28443643	rs1778792	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	13q12.2	NR	rs1778792-A	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
802	chr13	28444087	28444088	rs1778793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q12.2		rs1778793-G	NR	1E-48		0.0324	[0.028-0.037] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
802	chr13	28444087	28444088	rs1778793	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	13q12.2	PLUT	rs1778793-C	0.431616	5E-68		0.00888748	[0.0079-0.0099] unit increase	Affymetrix [13995440] (imputed)	N
802	chr13	28448123	28448124	rs73169611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.2	NR	rs73169611-C	NR	4E-14		0.022	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28452944	28452945	rs1756943	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	13q12.2		rs1756943-?	NR	5E-8				Affymetrix [NR] (imputed)	N
802	chr13	28455265	28455266	rs9554186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q12.2		rs9554186-?	NR	2E-8				NR [~ 8900000] (imputed)	N
802	chr13	28458528	28458529	rs7990857	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs7990857-C	0.388	2E-10				Affymetrix [10369434] (imputed)	N
802	chr13	28459875	28459876	rs4325403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	13q12.2		rs4325403-T	0.779217	3E-9		0.0295944	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
802	chr13	28476977	28476978	rs9554197	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	13q12.2	PDX1-AS1	rs9554197-T	0.399	9E-11		1.14	[1.1-1.19]	Illumina [866891] (imputed)	N
802	chr13	28487598	28487599	rs11619319	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	13q12.2	PDX1-AS1	rs11619319-A	0.7816	7E-8		0.0078	[0.0049-0.0107] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
802	chr13	28487598	28487599	rs11619319	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	13q12.2	PDX1-AS1	rs11619319-A	0.7789	3E-20		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
802	chr13	28487598	28487599	rs11619319	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	13q12.2	PDX1	rs11619319-A	0.764539	9E-10		0.020759	[0.014-0.027] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
802	chr13	28487598	28487599	rs11619319	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	13q12.2	PDX1	rs11619319-A	0.764539	5E-14		0.017954	[0.013-0.023] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
802	chr13	28487598	28487599	rs11619319	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	13q12.2	PDX1	rs11619319-G	0.2327	5E-7		0.0094	[0.0057-0.0131] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
802	chr13	28487598	28487599	rs11619319	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	13q12.2	PDX1	rs11619319-G		3E-6		0.106	[0.061-0.151] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
802	chr13	28487598	28487599	rs11619319	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	13q12.2	PDX1	rs11619319-G		4E-7		0.115	[0.07-0.16] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
802	chr13	28487598	28487599	rs11619319	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	13q12.2	PDX1	rs11619319-G	0.211522206149027	5E-8		0.020431833	[0.013-0.028] unit increase	Illumina [197481]	N
802	chr13	28491197	28491198	rs2293941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q12.2	NR	rs2293941-A	NR	3E-31		0.0342	[0.029-0.04] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28491197	28491198	rs2293941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	13q12.2	NR	rs2293941-A	NR	1E-25		0.0315	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28491197	28491198	rs2293941	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	13q12.2	PDX1	rs2293941-A	0.221	5E-10		5.991E-4	[-0.00066-0.00186] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
802	chr13	28491197	28491198	rs2293941	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	13q12.2	PDX1	rs2293941-A	0.2231	9E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
802	chr13	28492404	28492405	rs61944004	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	13q12.2	PLUT	rs61944004-A	0.41	8E-10		0.066	[0.044-0.088] unit increase	Affymetrix [774398] (imputed)	N
802	chr13	28493996	28493997	rs9581943	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	13q12.2	PDX1-AS1, PDX1	rs9581943-A	0.39	5E-14		1.15	[1.12-1.19]	Illumina [11381182] (imputed)	N
802	chr13	28493996	28493997	rs9581943	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	13q12.2	PDX1	rs9581943-?	NR	2E-7		1.17	[1.10-1.24]	Illumina [866891] (imputed)	N
802	chr13	28493996	28493997	rs9581943	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	13q12.2	URAD, FLT3, PAN3-AS1, PAN3, GSX1, PDX1-AS1, PDX1, ATP5EP2, CDX2	rs9581943-A	0.406	2E-9		1.15	[1.10-1.20]	Illumina [608202]	N
802	chr13	28498264	28498265	rs60353775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q12.2		rs60353775-G	NR	4E-36		0.0293	[0.025-0.034] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
802	chr13	28499961	28499962	rs7981781	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	13q12.2	PDX1	rs7981781-A	0.2337	5E-10	(Non diabetics)	0.088977575	[0.061-0.117] mmol/L increase	Illumina [24111857] (imputed)	N
802	chr13	28499961	28499962	rs7981781	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	13q12.2	PDX1	rs7981781-A	0.2337	1E-8		0.07885604	[0.052-0.106] mmol/L increase	Illumina [24111857] (imputed)	N
802	chr13	28501597	28501598	rs11620388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.2	NR	rs11620388-G	NR	5E-10		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28502873	28502874	rs55836809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	13q12.2		rs55836809-G	NR	7E-27		0.025	[0.02-0.03] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
802	chr13	28502873	28502874	rs55836809	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q12.2	PDX1	rs55836809-A	0.779889	8E-9		0.018354	[0.012-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
802	chr13	28510711	28510712	rs4581570	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	13q12.2	PDX1, ATP5EP2	rs4581570-?	NR	9E-10		0.03311	[0.023-0.044] unit increase novel	Illumina [6108953] (imputed)	N
802	chr13	28533737	28533738	rs9579135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q12.2	NR	rs9579135-G	NR	2E-17		0.0227	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
802	chr13	28542960	28542961	rs1805106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	CDX2	rs1805106-G	0.0335	1E-27		0.1141353	[0.094-0.135] unit increase	Affymetrix [~ 2500000] (imputed)	N
802	chr13	28557888	28557889	rs9581957	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	13q12.2	NR	rs9581957-C	0.68	4E-9		0.93	NR	NR [8546065] (imputed)	N
802	chr13	28562253	28562254	rs78514541	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs78514541-C	0.731	1E-25				Affymetrix [10369434] (imputed)	N
802	chr13	28562253	28562254	rs78514541	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs78514541-C	0.731	9E-27				Affymetrix [10369434] (imputed)	N
802	chr13	28573360	28573361	rs191570382	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	13q12.2	NR	rs191570382-G		5E-6		0.1311	[0.074-0.188] SD units increase	NR [10700000] (imputed)	N
803	chr13	28574617	28574618	rs11839192	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	13q12.2	FLT3	rs11839192-A	0.336942857	8E-6		0.15668	[0.088-0.226] unit increase	Illumina [6952813] (imputed)	N
803	chr13	28579337	28579338	rs549943568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs549943568-T	1.48999999999955E-4	2E-10		0.66462845	[0.46-0.87] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28595939	28595940	rs188175496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs188175496-C	0.976	2E-18				Affymetrix [10369434] (imputed)	N
803	chr13	28595939	28595940	rs188175496	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs188175496-C	0.976	1E-15				Affymetrix [10369434] (imputed)	N
803	chr13	28597186	28597187	rs61946325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	FLT3	rs61946325-T	0.1747	3E-10		0.02970125	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28599093	28599094	rs76080105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	13q12.2	NR	rs76080105-T	0.987432	2E-16		0.241972	[0.18-0.3] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
803	chr13	28599913	28599914	rs2491244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q12.2	FLT3	rs2491244-A	0.5893	5E-25		0.03747725	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28599913	28599914	rs2491244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q12.2	FLT3	rs2491244-A	0.5892	5E-12		0.02508979	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	7E-49		0.1599	[0.14-0.18] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	2E-13		0.078	[0.057-0.099] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	1E-29		0.1296	[0.11-0.15] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	1E-23		0.1088	[0.087-0.13] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	1E-464		0.4865	[0.47-0.51] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	13q12.2		rs76428106-C	NR	2E-26		0.4677	[0.38-0.55] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	7E-9		0.0628	[0.041-0.084] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	6E-9		0.0626	[0.042-0.084] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	13q12.2		rs76428106-C	NR	7E-15		0.3711	[0.28-0.46] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q12.2		rs76428106-C	NR	9E-9		0.0598	[0.039-0.08] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	13q12.2		rs76428106-T	0.987	2E-28				Affymetrix [10369434] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs76428106-T	0.987	1E-310				Affymetrix [10369434] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs76428106-T	0.987	1E-220				Affymetrix [10369434] (imputed)	N
803	chr13	28604006	28604007	rs76428106	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	13q12.2		rs76428106-T	0.007	1E-8		0.515	[0.34-0.69] unit increase	Affymetrix, Illumina [NR] (imputed)	N
803	chr13	28604006	28604007	rs76428106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	NR	5E-12		0.0756	[0.054-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	NR	2E-13		0.0804	[0.059-0.102] unit increase	Affymetrix [9000000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	NR	3E-9		0.0682	[0.046-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.01301	4E-83		0.19873013	[0.18-0.22] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.01302	3E-38		0.13321805	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.0130130000000001	2E-574		0.5410481	[0.52-0.56] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.013018	2E-793		0.6314534	[0.61-0.65] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.013022	2E-22		0.100468576	[0.08-0.121] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.013021	5E-11		0.066815995	[0.047-0.087] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	13q12.2	FLT3	rs76428106-C	0.013014	7E-16		0.08234449	[0.062-0.102] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.0132541	4E-74				Affymetrix, Illumina [24649327] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.013471	3E-77		0.158445	[0.14-0.18] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.013438	6E-32		0.104475	[0.087-0.122] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.0132171	1E-846				Affymetrix, Illumina [23467995] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.0132183	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.013444	5E-13		0.062814	[0.046-0.08] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.0131444	1E-15				Affymetrix, Illumina [19905671] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	13q12.2	NR	rs76428106-C	0.013391	3E-18		0.081896	[0.064-0.1] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	13q12.2	FLT3	rs76428106-C	0.013	2E-24		1.46	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-T	0.98703	2E-12		0.0620148	[0.045-0.079] unit increase	Affymetrix [NR] (imputed)	N
803	chr13	28604006	28604007	rs76428106	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-T	0.987026	2E-11		0.0607578	[0.043-0.078] unit increase	Affymetrix [NR] (imputed)	N
803	chr13	28604006	28604007	rs76428106	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	13q12.2	FLT3	rs76428106-C	0.01095	2E-26		0.46772674	[0.38-0.55] unit increase	Affymetrix [7288503] (imputed)	N
803	chr13	28604006	28604007	rs76428106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q12.2		rs76428106-?	NR	4E-63				NR [~ 8900000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q12.2		rs76428106-?	NR	7E-9				NR [~ 8900000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q12.2		rs76428106-?	NR	4E-39				NR [~ 8900000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	13q12.2		rs76428106-?	NR	3E-20				NR [~ 8900000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q12.2	NR	rs76428106-?	NR	2E-12	(Flt3L)	2.11718	[1.53-2.71] unit increase	Illumina [11901634] (imputed)	N
803	chr13	28604006	28604007	rs76428106	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	13q12.2	FLT3	rs76428106-T	0.99	8E-11		0.0497	[0.035-0.065] unit decrease	Illumina [27887661] (imputed)	N
803	chr13	28604006	28604007	rs76428106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-C	0.0146	2E-19		0.1421511	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-C	0.0146	8E-21		0.147559	[0.12-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-C	0.0146	4E-188		0.4563644	[0.43-0.49] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-C	0.0146	3E-240		0.5177115	[0.49-0.55] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28604006	28604007	rs76428106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q12.2	FLT3	rs76428106-C	0.0147	2E-136		0.3888834	[0.36-0.42] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28612885	28612886	rs2504235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	13q12.2		rs2504235-A	0.362	1E-19				Affymetrix [10369434] (imputed)	N
803	chr13	28612885	28612886	rs2504235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs2504235-A	0.362	5E-49				Affymetrix [10369434] (imputed)	N
803	chr13	28612885	28612886	rs2504235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs2504235-A	0.362	1E-45				Affymetrix [10369434] (imputed)	N
803	chr13	28612885	28612886	rs2504235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q12.2	FLT3	rs2504235-G	0.637581	9E-40		0.0309328	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28612885	28612886	rs2504235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q12.2	FLT3	rs2504235-G	0.637547	9E-35		0.028900111	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28612885	28612886	rs2504235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs2504235-A	0.362378	5E-92		0.0551386	[0.05-0.06] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28612885	28612886	rs2504235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs2504235-G	0.63756	2E-33		0.02808306	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr13	28612885	28612886	rs2504235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs2504235-G	0.658793	2E-29				Affymetrix, Illumina [23114412] (imputed)	N
803	chr13	28612885	28612886	rs2504235	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q12.2	NR	rs2504235-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
803	chr13	28612885	28612886	rs2504235	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	13q12.2	FLT3	rs2504235-A	0.3848	2E-7		1.1403098		Illumina [8265319] (imputed)	N
803	chr13	28613297	28613298	rs2504236	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	13q12.2	LNX2, POLR1D, GSX1, PDX1, ATP5EP2, CDX2, PRHOXNB, PAN3-AS1, PAN3, FLT1	rs2504236-T	0.584545700433804	2E-8		0.016896125	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
803	chr13	28613992	28613993	rs7316962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q12.2	FLT3	rs7316962-G	0.547369	5E-13		0.016255103	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr13	28613992	28613993	rs7316962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q12.2	FLT3	rs7316962-G	0.54738	8E-16		0.018252607	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr13	28613992	28613993	rs7316962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q12.2	FLT3	rs7316962-G	0.547285	3E-10		0.0130273	[0.009-0.0171] unit decrease	Affymetrix [93095623] (imputed)	N
803	chr13	28617707	28617708	rs7318817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q12.2	NA	rs7318817-T	0.6303	4E-16		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
803	chr13	28617707	28617708	rs7318817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q12.2	NA	rs7318817-T	0.6303	4E-16		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
803	chr13	28617707	28617708	rs7318817	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q12.2	NA	rs7318817-T	0.6303	4E-16		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
803	chr13	28618461	28618462	rs9551428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs9551428-T	0.626738	1E-109		0.06918885	[0.063-0.075] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28618586	28618587	rs34061361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs34061361-C	0.639524	2E-9		0.013963822	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6379	5E-12		0.02592361	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6379	2E-11		0.02528874	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6378	2E-12		0.02633759	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6378	7E-12		0.02569719	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6379	5E-16		0.03059709	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6378	1E-12		0.02661405	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28618586	28618587	rs34061361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	13q12.2	FLT3	rs34061361-C	0.6379	7E-12		0.02580235	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28620035	28620036	rs9507983	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q12.2	FLT3	rs9507983-C	0.389	3E-7	(EA)	0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
803	chr13	28620035	28620036	rs9507983	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q12.2	FLT3	rs9507983-C	0.388	1E-7		0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
803	chr13	28622543	28622544	rs34172843	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	13q12.2	FLT3	rs34172843-A	NR	6E-6	(fixed)	1.175		Illumina [87827]	N
803	chr13	28623047	28623048	rs79490353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q12.2	NR	rs79490353-C	NR	1E-22		0.0777	[0.062-0.093] unit increase	Affymetrix [9000000] (imputed)	N
803	chr13	28623047	28623048	rs79490353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q12.2	NR	rs79490353-C	NR	1E-27		0.0864	[0.071-0.102] unit increase	Affymetrix [9000000] (imputed)	N
803	chr13	28623524	28623525	rs146983744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs146983744-A	6.90999999999997E-4	4E-19		0.474359	[0.37-0.58] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28623524	28623525	rs146983744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs146983744-A	6.95000000000001E-4	3E-25		0.548627	[0.45-0.65] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28624293	28624294	rs1933437	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.2		rs1933437-A	0.6193	3E-9		0.08453441	[0.056-0.113] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
803	chr13	28624293	28624294	rs1933437	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q12.2	FLT3	rs1933437-G	0.374865	1E-22		0.0141618	[0.011-0.017] unit increase	Affymetrix [12370749]	N
803	chr13	28624293	28624294	rs1933437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q12.2		rs1933437-?	NR	2E-9				NR [~ 8900000] (imputed)	N
803	chr13	28624293	28624294	rs1933437	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q12.2	NR	rs1933437-G	NR	1E-7		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
803	chr13	28624293	28624294	rs1933437	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	13q12.2	FLT3, GFT3A	rs1933437-G	0.38939999999999997	1E-18		0.0162	[0.013-0.02] unit increase	Illumina [246328]	N
803	chr13	28624772	28624773	rs78999685	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs78999685-G	0.973	3E-10				Affymetrix [10369434] (imputed)	N
803	chr13	28625774	28625775	rs113676020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs113676020-G	0.200202	4E-18		0.032421485	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28625830	28625831	rs7989654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q12.2	FLT3	rs7989654-A	0.627849	3E-11		0.015606208	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28626715	28626716	rs146030737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs146030737-T	0.00449999999999995	8E-19		0.14663309	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28626715	28626716	rs146030737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs146030737-T	0.00449599999999994	2E-40		0.21979783	[0.19-0.25] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28637837	28637838	rs9554228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	FLT3	rs9554228-G	0.6251	2E-41		0.04990802	[0.043-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28640562	28640563	rs9513018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q12.2		rs9513018-?	NR	4E-12				NR [~ 8900000] (imputed)	N
803	chr13	28641533	28641534	rs1320534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs1320534-G	0.194765	1E-18		0.02953298	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28641570	28641571	rs9551434	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	13q12.2	FLT3	rs9551434-?	NR	4E-15		0.05994	[0.045-0.075] unit decrease novel	Illumina [6108953] (imputed)	N
803	chr13	28641730	28641731	rs9554235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	13q12.2		rs9554235-C	0.203157	1E-14		0.0418385	[0.031-0.052] unit decrease	Illumina [13471440] (imputed)	N
803	chr13	28649995	28649996	rs189992044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	FLT3	rs189992044-A	0.0039	7E-12		0.2288441	[0.16-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28674796	28674797	rs117145034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q12.2	FLT3	rs117145034-A	0.017352	1E-23		0.09692068	[0.078-0.116] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28674796	28674797	rs117145034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q12.2	FLT3	rs117145034-A	0.017358	2E-12		0.068655476	[0.05-0.088] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28674796	28674797	rs117145034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.2	FLT3	rs117145034-A	0.017379	4E-68		0.1686446	[0.15-0.19] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28674796	28674797	rs117145034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2	FLT3	rs117145034-A	0.017375	4E-117		0.22217506	[0.2-0.24] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28674796	28674797	rs117145034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	13q12.2	FLT3	rs117145034-A	0.0202	1E-10		0.1021958	[0.071-0.133] unit increase	Affymetrix [~ 2500000] (imputed)	N
803	chr13	28676970	28676971	rs1933440	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q12.2	NA	rs1933440-A	0.8396	3E-8		0.0146	[0.0095-0.0197] unit decrease	NR [~ 27400000] (imputed)	N
803	chr13	28678253	28678254	rs9551440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	13q12.2		rs9551440-T	0.275755	5E-10		0.0266961	[0.018-0.035] unit increase	Illumina [13477433] (imputed)	N
803	chr13	28678253	28678254	rs9551440	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	13q12.2	FLT3, PAN3-AS1	rs9551440-?	NR	1E-8		0.02789	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
803	chr13	28678253	28678254	rs9551440	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	13q12.2	FLT3, PAN3-AS1	rs9551440-?	NR	6E-9		0.03064	[0.02-0.041] unit increase novel	Illumina [6108953] (imputed)	N
803	chr13	28679426	28679426	rs57453590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q12.2	FLT3, CHCHD2P8	rs57453590-AT	0.219423	1E-10		0.017565835	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28687083	28687084	rs4397962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q12.2	NR	rs4397962-C	0.220957	1E-14		0.02077322	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28688714	28688715	rs112634401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q12.2		rs112634401-C	0.137308	6E-13		0.023409924	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
803	chr13	28697792	28697793	rs9319415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q12.2		rs9319415-?	NR	1E-12				NR [~ 8900000] (imputed)	N
803	chr13	28701465	28701465	rs113316523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q12.2		rs113316523-CTCAA	0.151727	9E-13		0.022092933	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr13	28732437	28732438	rs7334486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q12.2	NR	rs7334486-T	0.153067	4E-15		0.019951	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
804	chr13	28739064	28739064	rs138453830	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	13q12.2	PAN3	rs138453830-A	0.9421	2E-7		0.2922	[0.18-0.4] unit decrease	Illumina [up to 38043574] (imputed)	N
804	chr13	28758036	28758037	rs7982828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs7982828-A	0.193358	9E-19				Affymetrix, Illumina [24246363] (imputed)	N
804	chr13	28758036	28758037	rs7982828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.2	NR	rs7982828-A	0.196735	2E-17				Affymetrix, Illumina [20825802] (imputed)	N
804	chr13	28758036	28758037	rs7982828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q12.2	NR	rs7982828-A	0.152534	2E-15		0.02136	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
804	chr13	28761591	28761592	rs145096717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q12.2	NR	rs145096717-A	0.012924	5E-472		0.430494	[0.41-0.45] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
804	chr13	28761591	28761592	rs145096717	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q12.2	NR	rs145096717-?	NR	3E-14	(Flt3L)	2.28281	[1.69-2.87] unit increase	Illumina [11901634] (imputed)	N
804	chr13	28781774	28781775	rs7320453	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.2	NR	rs7320453-?	NR	2E-12				Affymetrix [NR]	N
804	chr13	28809860	28809861	rs9579170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q12.2		rs9579170-C	NR	3E-18		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
804	chr13	28809860	28809861	rs9579170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q12.2		rs9579170-C	NR	2E-16		0.0225	[0.017-0.028] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
804	chr13	28809860	28809861	rs9579170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	13q12.2		rs9579170-C	0.333746	4E-8		0.0216423	[0.014-0.029] unit decrease	Illumina [13476299] (imputed)	N
804	chr13	28809860	28809861	rs9579170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q12.2	PAN3	rs9579170-C	0.130827	5E-12		0.0246093	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
804	chr13	28816277	28816278	rs7328732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	13q12.2		rs7328732-A	0.320202	3E-9		0.0230695	[0.015-0.031] unit decrease	Illumina [13476266] (imputed)	N
805	chr13	28842950	28842950	rs377741153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q12.2	PAN3	rs377741153-CT	0.0394	4E-25		0.1003137	[0.081-0.119] unit increase	Affymetrix [~ 2500000] (imputed)	N
805	chr13	28842950	28842950	rs377741153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q12.2	PAN3	rs377741153-CT	0.0394	6E-38		0.125067	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
805	chr13	28842950	28842950	rs377741153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q12.2	PAN3	rs377741153-CT	0.0394	3E-17		0.08204904	[0.063-0.101] unit decrease	Affymetrix [~ 2500000] (imputed)	N
805	chr13	28843763	28843765	rs59406912	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	13q12.2	PAN3	rs59406912-CTT	0.9432	6E-6	(Subset)	0.2726	[0.15-0.39] unit decrease	Illumina [up to 38043574] (imputed)	N
805	chr13	28849761	28849762	rs76806311	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.2		rs76806311-G	0.962	6E-41				Affymetrix [10369434] (imputed)	N
805	chr13	28849761	28849762	rs76806311	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.2		rs76806311-G	0.962	2E-29				Affymetrix [10369434] (imputed)	N
805	chr13	28858081	28858082	rs116856050	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	13q12.2		rs116856050-?	NR	5E-8				Affymetrix [NR] (imputed)	N
805	chr13	28867267	28867268	rs9554311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q12.2		rs9554311-?	NR	4E-10				NR [~ 8900000] (imputed)	N
805	chr13	28893641	28893642	rs2296189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q12.3		rs2296189-A	0.811	1E-9				Affymetrix [10369434] (imputed)	N
805	chr13	28893641	28893642	rs2296189	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q12.3		rs2296189-A	0.811	7E-9				Affymetrix [10369434] (imputed)	N
805	chr13	28909834	28909835	rs7982251	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	13q12.3	NR	rs7982251-C	0.13	3E-6		1.2658228	[1.15-1.39]	NR [8807005] (imputed)	N
805	chr13	28929710	28929711	rs17086609	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q12.3	FLT1	rs17086609-?	0.3475	5E-6	(IED)			Illumina [475971]	N
805	chr13	28934363	28934364	rs9508017	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q12.3	FLT1	rs9508017-C	0.769319	2E-8		0.0174	[0.011-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
805	chr13	28957785	28957786	rs9551463	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q12.3		rs9551463-T	0.55718	3E-6		0.031562	[0.018-0.045] unit increase	Affymetrix [15580782] (imputed)	N
805	chr13	28958954	28958955	rs3751395	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	13q12.3	FLT1	rs3751395-C	0.526927	1E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
805	chr13	28962665	28962666	rs7337610	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q12.3	FLT1	rs7337610-T	0.391	8E-10		6.144	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
805	chr13	28962756	28962757	rs9551465	34413389	Ruggiero D	2021-08-19	Sci Rep	Genetics of PlGF plasma levels highlights a role of its receptors and supports the link between angiogenesis and immunity.	Placenta growth factor levels	1,600 European ancestry individuals	468 European ancestry individuals	13q12.3		rs9551465-T	0.54	8E-8		0.022	[0.014-0.03] unit increase	Illumina [8281256] (imputed)	N
806	chr13	28969457	28969458	rs2104330	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q12.3		rs2104330-T	0.53189	1E-7		0.035832	[0.022-0.049] unit increase	Affymetrix [15580782] (imputed)	N
806	chr13	28973620	28973621	rs9319428	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	13q12.3	FLT1	rs9319428-A	0.3121	5E-11		0.036	[0.025-0.047] unit increase	Affymetrix [at least 7947838] (imputed)	N
806	chr13	28973620	28973621	rs9319428	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q12.3	FLT1	rs9319428-A	0.3153	1E-11		0.0404	[0.029-0.052] unit increase	NR [8041861] (imputed)	N
806	chr13	28978922	28978923	rs77330370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q12.3		rs77330370-A	NR	5E-17		0.3654	[0.28-0.45] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
806	chr13	28978922	28978923	rs77330370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q12.3		rs77330370-A	0.035049338	5E-17		0.36537147	[0.28-0.45] unit decrease	Illumina [13427135] (imputed)	N
806	chr13	28984062	28984063	rs9508025	23364394	Lee JY	2013-01-31	J Hum Genet	A genome-wide association study of a coronary artery disease risk variant.	Coronary heart disease	2,123 Korean ancestry cases, 3,591 Korean ancestry controls	3,052 Japanese ancestry cases, 4,976 Japanese ancestry controls	13q12.3	FLT1	rs9508025-C	0.50	6E-7		1.14	[1.08-1.20]	Affymetrix [521786]	N
806	chr13	28984399	28984400	rs9508026	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	13q12.3	NR	rs9508026-T	0.2993	5E-9		0.0451	[0.03-0.06] unit decrease	Illumina [~ 10600000] (imputed)	N
806	chr13	28985315	28985316	rs9551468	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Placenta growth factor levels	21,758 European ancestry individuals	9,173 individuals	13q12.3		rs9551468-C	0.48	3E-22		0.0794	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
806	chr13	28991808	28991808	rs11450136	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q12.3	FLT1	rs11450136-G	0.8673	3E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [18391927] (imputed)	N
806	chr13	28991901	28991902	rs34961350	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q12.3	FLT1, POMP	rs34961350-?		4E-32				Affymetrix, Illumina [NR] (imputed)	N
806	chr13	28995939	28995940	rs9508032	31982041	Guillen-Guio B	2020-01-23	Lancet Respir Med	Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study.	Acute respiratory distress syndrome in sepsis	274 European ancestry cases, 316 European ancestry controls	359 European ancestry cases, 986 European ancestry controls	13q12.3	FLT1	rs9508032-C	0.75	5E-8		1.6393442	[1.1-2.44]	Affymetrix [7984208] (imputed)	N
806	chr13	28997701	28997702	rs9513112	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q12.3	FLT1	rs9513112-A	0.334	1E-9		0.04	[0.026-0.054] unit increase	Affymetrix [7947838] (imputed)	N
806	chr13	29001720	29001721	rs2281827	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q12.3	NR	rs2281827-T		2E-13		0.1	[0.08-0.12] unit increase	NR [NR]	N
806	chr13	29006041	29006043	rs11467641	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q12.3	FLT1	rs11467641-?	NR	6E-9		0.0598645	[0.04-0.08] unit increase	Illumina [19707525] (imputed)	N
806	chr13	29007142	29007143	rs9513113	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	13q12.3	NR	rs9513113-?	NR	1E-6		0.101184	[0.06-0.142] unit increase	NR [13958389] (imputed)	N
806	chr13	29007142	29007143	rs9513113	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q12.3	NR	rs9513113-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
806	chr13	29009672	29009673	rs2296285	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	13q12.3	FLT1	rs2296285-?	NR	5E-20		0.0469281	[0.037-0.057] unit increase	Illumina [4804024] (imputed)	N
806	chr13	29015876	29015877	rs9508036	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	13q12.3	NR	rs9508036-G	0.35	4E-6				Illumina [4877242] (imputed)	N
806	chr13	29016714	29016715	rs9513116	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	13q12.3	FLT1	rs9513116-A	0.33	3E-9		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
806	chr13	29022644	29022645	rs1924981	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	13q12.3	FLT1	rs1924981-T	0.334	2E-7		1.05	[1.03-1.06]	Affymetrix [9149595] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q12.3		rs75419986-C	0.067835528	2E-12		0.19864736	[0.14-0.25] unit decrease	Illumina [13427711] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q12.3		rs75419986-C	NR	7E-11		0.1811	[0.13-0.24] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	13q12.3		rs75419986-C	NR	2E-11		0.1945	[0.14-0.25] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	13q12.3		rs75419986-C	0.066201029	2E-11		0.1944946	[0.14-0.25] unit decrease	Illumina [13429980] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	13q12.3		rs75419986-C	NR	4E-10		0.1255	[0.086-0.165] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	13q12.3		rs75419986-C	0.066201029	4E-10		0.12550926	[0.086-0.165] unit decrease	Illumina [13429980] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	13q12.3		rs75419986-C	NR	2E-8		0.106	[0.069-0.143] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
806	chr13	29031997	29031998	rs75419986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	13q12.3		rs75419986-C	0.066201029	2E-8		0.10595289	[0.069-0.143] unit decrease	Illumina [13429980] (imputed)	N
806	chr13	29042431	29042432	rs74412485	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q12.3	FLT1	rs74412485-?	NR	3E-34		0.330952	[0.28-0.38] unit decrease	Illumina [19707525] (imputed)	N
806	chr13	29073853	29073854	rs7985205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q12.3		rs7985205-?	NR	3E-9				NR [~ 8900000] (imputed)	N
806	chr13	29097396	29097397	rs17086772	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs17086772-?	NR	3E-17				Affymetrix [NR]	N
807	chr13	29138284	29138285	rs7318880	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	13q12.3		rs7318880-T	0.5008	8E-8		1.1	[1.06-1.13]	Illumina [11796347] (imputed)	N
807	chr13	29138497	29138498	rs4769612	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (fetal genotype effect)	2,145 Central Asian ancestry cases, 2,027 Central Asian ancestry controls, 4,630 European ancestry cases, 373,345 European ancestry controls	452 Kazakh ancestry cases, 361 Kazakh ancestry controls, 580 European ancestry cases, 760 European ancestry controls	13q12.3		rs4769612-C	0.52	4E-14		1.19	[1.13-1.24]	Illumina [12130433] (imputed)	N
807	chr13	29145322	29145323	rs1340819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	13q12.3		rs1340819-C	NR	3E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
807	chr13	29145322	29145323	rs1340819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q12.3	EIF4A1P7	rs1340819-C	NR	2E-8		0.0166419	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
807	chr13	29145322	29145323	rs1340819	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q12.3	FLT1	rs1340819-A	0.654986	4E-9		0.0123182	[0.0082-0.0164] unit increase	Affymetrix [NR] (imputed)	N
807	chr13	29145322	29145323	rs1340819	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	13q12.3	NR	rs1340819-A	0.6625	2E-8		0.0102	[0.0067-0.0137] unit increase	NR [~ 27400000] (imputed)	N
807	chr13	29164782	29164783	rs9579199	24080446	Rudolph A	2013-11-04	Endocr Relat Cancer	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Breast cancer (menopausal hormone therapy interaction)	2,920 European ancestry cases	7,689 European ancestry cases, 9,266 European ancestry controls	13q12.3	POMP	rs9579199-?		8E-6		1.2048	[1.11-1.32]	Illumina [2500000] (imputed)	N
807	chr13	29167473	29167474	rs9508078	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q12.3		rs9508078-G	0.39928	3E-7		0.03521	[0.022-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
807	chr13	29167473	29167474	rs9508078	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q12.3		rs9508078-G	0.39928	3E-6		0.032468	[0.019-0.046] unit decrease	Affymetrix [15580782] (imputed)	N
808	chr13	29230580	29230581	rs1340817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q12.3		rs1340817-G	NR	5E-15		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
808	chr13	29230580	29230581	rs1340817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q12.3		rs1340817-G	NR	2E-14		0.0128	[0.0095-0.0161] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
808	chr13	29230580	29230581	rs1340817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q12.3		rs1340817-G	NR	1E-15		0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q12.3	POMP	rs1340817-G	0.354758	1E-23		0.023209771	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q12.3	POMP	rs1340817-G	0.35474	5E-24		0.02341765	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q12.3	NR	rs1340817-G	0.353829	9E-29		0.021641	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs1340817-G	0.391868	5E-30				Affymetrix, Illumina [24653286] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q12.3	NR	rs1340817-G	0.353712	1E-32		0.022988	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs1340817-G	0.391022	3E-32				Affymetrix, Illumina [24558453] (imputed)	N
808	chr13	29230580	29230581	rs1340817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q12.3	NR	rs1340817-G	0.35366	8E-35		0.023875	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
808	chr13	29230580	29230581	rs1340817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q12.3		rs1340817-?	NR	4E-22				NR [~ 8900000] (imputed)	N
808	chr13	29230580	29230581	rs1340817	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	13q12.3	POMP	rs1340817-G	0.3535	6E-10		0.02296831	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
808	chr13	29236225	29236226	rs7991576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q12.3	POMP	rs7991576-A	0.35439	8E-21		0.021703769	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
808	chr13	29236964	29236965	rs1771201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs1771201-G	0.391481	2E-26				Affymetrix, Illumina [24332387] (imputed)	N
808	chr13	29237054	29237055	rs1771200	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs1771200-?	NR	9E-11				Affymetrix [NR]	N
808	chr13	29238235	29238236	rs182099288	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	13q12.3	NR	rs182099288-C	0.007107	3E-6		0.848	[0.49-1.2] unit decrease	Illumina [10677593] (imputed)	N
808	chr13	29239629	29239630	rs1340818	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	13q12.3	POMP	rs1340818-T		3E-17		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
808	chr13	29239629	29239630	rs1340818	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	13q12.3	POMP	rs1340818-C	0.6127	4E-10		0.02300539	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
808	chr13	29278449	29278450	rs1305088	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	13q12.3	SLC46A3	rs1305088-A	0.06	9E-6	(ALT)	0.58	[NR] unit increase	Illumina [324623]	N
808	chr13	29327276	29327277	rs117709627	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q12.3	intergenic	rs117709627-T	0.028	3E-6		0.113	[0.066-0.16] unit decrease	Affymetrix [7947838] (imputed)	N
809	chr13	29368705	29368706	rs954108	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.3	SLC46A3	rs954108-A	0.463	1E-6	(Diet fat )	0.02	[NR] %energy increase	Illumina [899892]	N
809	chr13	29431337	29431338	rs1161463	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	13q12.3	intergenic	rs1161463-C	0.79	2E-6	(maternal warmth)	1.72	[NR] unit decrease	Perlegen [429981]	N
810	chr13	29529376	29529377	rs663497	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.3	NR	rs663497-?	NR	2E-8				Illumina [7760689] (imputed)	N
810	chr13	29537035	29537036	rs2758215	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	13q12.3	MTUS2	rs2758215-G	0.0913	2E-8		0.4342	[0.28-0.59] unit increase	Affymetrix [8590397] (imputed)	N
810	chr13	29577995	29577996	rs3899582	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs3899582-?	NR	2E-9				Affymetrix [NR]	N
810	chr13	29620653	29620654	rs2479768	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	13q12.3	KIAA0774	rs2479768-G	0.03	6E-6			[NR]	Affymetrix [398699]	N
811	chr13	29710619	29710620	rs9508291	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	13q12.3	NR	rs9508291-C		3E-6		0.1676	[0.097-0.238] SD units increase	NR [10700000] (imputed)	N
812	chr13	29836250	29836251	rs11616416	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q12.3	NR	rs11616416-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
812	chr13	29840207	29840208	rs78950910	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	13q12.3		rs78950910-?	NR	9E-6	(lmp)	4.82		Illumina [11595112] (imputed)	N
812	chr13	29872964	29872965	rs1544309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.3	SLC7A1	rs1544309-?	NR	2E-6	(TAG 54:4)	0.17431796	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
813	chr13	29898782	29898783	rs61999321	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q12.3	MTUS2	rs61999321-A	0.015	8E-6	(Cystathionine )	0.03	[NR] umol/L increase	Illumina [899892]	N
813	chr13	29961331	29961332	rs2388082	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	13q12.3	MTUS2	rs2388082-?	0.89	4E-6		1.69	[1.35-2.13]	Illumina [2380486] (imputed)	N
813	chr13	29990965	29990966	rs3125719	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	13q12.3	MTUS2	rs3125719-?	NR	7E-6		0.56	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
814	chr13	30021464	30021465	rs4379923	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs4379923-?	NR	2E-6				Affymetrix [NR]	N
814	chr13	30092682	30092683	rs9579383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q12.3		rs9579383-T	NR	9E-9		0.0255	[0.017-0.034] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
814	chr13	30118016	30118017	rs9578106	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q12.3	NR	rs9578106-C	0.1076	7E-6	(EA)	0.0461	[0.026-0.066] unit increase	Illumina [~ 11800000] (imputed)	N
814	chr13	30137827	30137828	rs7338758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	13q12.3		rs7338758-C	NR	9E-10		0.044	[0.03-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
814	chr13	30137827	30137828	rs7338758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	13q12.3		rs7338758-C	NR	9E-10		0.0394	[0.027-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
814	chr13	30137827	30137828	rs7338758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q12.3		rs7338758-?	NR	1E-12				NR [~ 8900000] (imputed)	N
814	chr13	30146200	30146201	rs9508495	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q12.3	SLC7A1	rs9508495-T	0.6709	1E-9		0.2242	[0.15-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
815	chr13	30154348	30154349	rs3803266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	13q12.3		rs3803266-C	NR	2E-9		0.0332	[0.022-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
815	chr13	30154348	30154349	rs3803266	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	13q12.3	SLC7A1	rs3803266-G	0.231717	7E-10		0.044118755	[0.03-0.058] unit increase	Affymetrix [7288503] (imputed)	N
815	chr13	30154348	30154349	rs3803266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q12.3		rs3803266-?	NR	7E-10				NR [~ 8900000] (imputed)	N
815	chr13	30157251	30157252	rs866573	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	13q12.3	SLC7A1	rs866573-T	0.149412	2E-10		0.069751225	[0.048-0.091] unit increase	Affymetrix [7288503] (imputed)	N
815	chr13	30164358	30164359	rs280912	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	13q12.3		rs280912-C	0.859671	8E-6		0.0162931	[0.009-0.0235] unit decrease	Illumina [13900000] (imputed)	N
815	chr13	30169097	30169098	rs4769763	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q12.3	SLC7A1	rs4769763-C	0.6076	3E-16		0.0161	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
815	chr13	30169860	30169861	rs61947180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q12.3		rs61947180-A	NR	1E-17		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
815	chr13	30172750	30172751	rs11618507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q12.3		rs11618507-?	NR	6E-18				NR [~ 8900000] (imputed)	N
815	chr13	30177474	30177475	rs5802526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q12.3		rs5802526-T	NR	3E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
815	chr13	30178037	30178038	rs147493529	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	13q12.3		rs147493529-C	0.943996	5E-6		0.0283822	[0.016-0.04] unit increase	Illumina [13900000] (imputed)	N
815	chr13	30258154	30258155	rs61947194	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q12.3	UBL3	rs61947194-A	0.2203	6E-6		0.0351	[0.02-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
816	chr13	30327968	30327969	rs9314972	31407531	Do AN	2019-08-13	Mol Genet Genomic Med	Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.	Left ventricular mass x antihypertensive treatment interaction	up to 2,068 African American individuals	up to 613 European ancestry individuals	13q12.3	UBL3	rs9314972-?	NR	5E-7	(dCCB versus TD, AA)	0.135	[0.082-0.188] unit decrease	Affymetrix, Illumina [up to 2191657] (imputed)	N
816	chr13	30347834	30347835	rs2892463	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NA	13q12.3	UBL3	rs2892463-?	NR	8E-6				Illumina [~ 2400000] (imputed)	N
817	chr13	30429133	30429134	rs278043	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	13q12.3	UBL3	rs278043-T	0.14	5E-6		0.7	[0.41-0.99] unit increase	Illumina [5833901] (imputed)	N
817	chr13	30436967	30436968	rs278050	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	13q12.3	Intergenic	rs278050-C	0.21	4E-6		1.28	[1.15-1.42]	Affymetrix, Illumina [3378933] (imputed)	N
817	chr13	30456113	30456114	rs11616444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q12.3		rs11616444-?	NR	6E-9				NR [~ 8900000] (imputed)	N
817	chr13	30458736	30458737	rs9314986	20460270	Garcia-Barcelo MM	2010-05-11	Hum Mol Genet	Genome-wide association study identifies a susceptibility locus for biliary atresia on 10q24.2.	Biliary atresia	281 Chinese ancestry cases, 481 Chinese ancestry controls	124 Chinese ancestry cases, 90 Chinese ancestry controls	13q12.3	UBL3	rs9314986-G	0.044	2E-6		2.95	[1.89-4.60]	Affymetrix [289118]	N
817	chr13	30462711	30462712	rs9551767	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs9551767-?	NR	6E-6				Affymetrix [NR]	N
817	chr13	30503276	30503277	rs3847988	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q12.3	NR	rs3847988-?	NR	4E-138				Affymetrix [NR]	N
818	chr13	30567600	30567601	rs142268497	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	13q12.3	NR	rs142268497-T	0.987816	3E-6		0.301	[0.18-0.43] unit increase	NR [9260588] (imputed)	N
818	chr13	30571045	30571055	rs200421910	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	13q12.3	NR	rs200421910-?	0.0988	8E-6		64.0	[-92--36] unit decrease	NR [9714326] (imputed)	N
818	chr13	30593976	30593977	rs150772020	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q12.3	NR	rs150772020-T	0.0421	5E-7		7.021	[4.28-9.77] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
819	chr13	30724072	30724073	rs9551857	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	13q12.3		rs9551857-?	NR	2E-6				Illumina [7401356] (imputed)	N
819	chr13	30743368	30743369	rs1073230	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q12.3	NR	rs1073230-T	0.376769	3E-12		0.0226771	[0.016-0.029] unit decrease	NR [19129689] (imputed)	N
819	chr13	30744079	30744080	rs7997640	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	13q12.3		rs7997640-C	0.43	4E-11		0.14	[0.1-0.18] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
819	chr13	30746968	30746969	rs9314998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	13q12.3		rs9314998-?	NR	2E-10				NR [~ 8900000] (imputed)	N
819	chr13	30746968	30746969	rs9314998	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	13q12.3	UBL3, KATNAL1	rs9314998-?	NR	2E-9		1.146	[1.097-1.198]	Illumina [13436641] (imputed)	N
819	chr13	30756206	30756207	rs76859863	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	13q12.3	LINC00544, KATNAL1	rs76859863-G	0.832	2E-7		1.29	[1.17-1.42]	Affymetrix, Illumina [12148595] (imputed)	N
819	chr13	30777300	30777301	rs1023104	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KATNAL1	rs1023104-?	NR	3E-8	(male)	1.36421	[NR] unit decrease	Affymetrix [NR] (imputed)	N
819	chr13	30777854	30777855	rs17074418	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	13q12.3	HMGB1, KATNAL1, UBL3, SLC7A1	rs17074418-T	0.93	5E-6	(EA)	0.05	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
819	chr13	30783451	30783452	rs2031998	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q12.3	NR	rs2031998-C	0.194794	3E-13		0.0290726	[0.021-0.037] unit increase	NR [19129689] (imputed)	N
819	chr13	30798806	30798807	rs861727	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	13q12.3	NR	rs861727-?	NR	3E-7			[NR]	Illumina [5779266] (imputed)	N
820	chr13	30867043	30867044	rs9506281	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.3	NR	rs9506281-?	NR	3E-8				Illumina [7760689] (imputed)	N
820	chr13	30883338	30883339	rs4769824	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q12.3	KATNAL1	rs4769824-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
820	chr13	30885222	30885223	rs185694	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	13q12.3	KATNAL1	rs185694-?	NR	4E-6				Affymetrix [NR]	N
820	chr13	30916262	30916263	rs12429252	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	13q12.3	KATNAL	rs12429252-G	0.19	4E-6		0.117	[0.068-0.166] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
821	chr13	30944067	30944068	rs1275186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q12.3	LINC00426	rs1275186-G	0.341493	3E-11		0.015571931	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr13	30945931	30945932	rs1028938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q12.3		rs1028938-T	NR	4E-10		0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
821	chr13	30945931	30945932	rs1028938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs1028938-T	0.469507	2E-12				Affymetrix, Illumina [23467995] (imputed)	N
821	chr13	30945931	30945932	rs1028938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q12.3	NR	rs1028938-T	0.462848	1E-10		0.012109	[0.0084-0.0158] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
821	chr13	30946290	30946291	rs1275189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q12.3		rs1275189-?	NR	9E-12				NR [~ 8900000] (imputed)	N
821	chr13	30948740	30948741	rs1314940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q12.3	LINC00426	rs1314940-C	0.826549	4E-11		0.019343982	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
821	chr13	30950119	30950119	rs145222507	33168928	Wenric S	2020-11-10	Pharmacogenomics J	Rapid response to the alpha-1 adrenergic agent phenylephrine in the perioperative period is impacted by genomics and ancestry.	Rapid response to perioperative phenylephrine (change in mean arterial pressure)	1,082 African American individuals, 1,112 European ancestry individuals, 1,505 Hispanic individuals	NA	13q12.3	LINC01058, LINC00426, KATNAL1, HMGB1	rs145222507-?		2E-8		0.14	[0.1-0.18] unit increase	Illumina [42246687] (imputed)	N
821	chr13	30950484	30950485	rs9551900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q12.3		rs9551900-T	NR	2E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
821	chr13	30957297	30957298	rs12161828	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	13q12.3	NR	rs12161828-T	0.08	1E-5	(female)	2.01	[NR]	Illumina [5730693] (imputed)	N
821	chr13	30957687	30957688	rs7335631	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	13q12.3	KATNAL1	rs7335631-C	0.09	3E-6	(multivariate)			Illumina [319818]	N
821	chr13	30961467	30961468	rs6490455	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q12.3	NR	rs6490455-?	NR	9E-7				Affymetrix [5486770] (imputed)	N
821	chr13	30963922	30963923	rs12867032	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q12.3	HMGB1	rs12867032-T	0.949945	3E-9		0.0267778	[0.018-0.036] unit increase	Affymetrix [NR] (imputed)	N
821	chr13	30976445	30976446	rs540759821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	13q12.3	NR	rs540759821-C	NR	3E-9		0.033	[0.022-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr13	30994429	30994430	rs7986681	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.3		rs7986681-C	0.4	8E-11		6.51	z score increase	Affymetrix [9061022] (imputed)	N
821	chr13	31007804	31007805	rs149778057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	13q12.3		rs149778057-A	0.671779	4E-8		0.0242303	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
821	chr13	31007804	31007805	rs149778057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	13q12.3		rs149778057-A	0.671779	8E-9		0.0249297	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
821	chr13	31007804	31007805	rs149778057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q12.3		rs149778057-C	NR	3E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
821	chr13	31007804	31007805	rs149778057	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q12.3	HMGB1	rs149778057-A	0.671468	4E-9		0.00904547	[0.006-0.0121] unit increase	Affymetrix [12370749]	N
821	chr13	31007804	31007805	rs149778057	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q12.3	HMGB1	rs149778057-A	0.671679	3E-12		0.0156114	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
821	chr13	31012903	31012904	rs1928496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	13q12.3		rs1928496-T	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
821	chr13	31012903	31012904	rs1928496	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	13q12.3	HMGB1	rs1928496-?	NR	3E-9		0.0179	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
821	chr13	31012903	31012904	rs1928496	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	13q12.3	NR	rs1928496-C	0.2576	9E-14		0.021059876	[0.016-0.027] unit decrease	Affymetrix [10549349] (imputed)	N
821	chr13	31012903	31012904	rs1928496	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q12.3	NR	rs1928496-?	NR	2E-8		0.13473	[0.087-0.182] unit increase	Affymetrix [7794483] (imputed)	N
821	chr13	31016978	31016979	rs1331698	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q12.3	NR	rs1331698-C	0.284514	8E-11		0.0139899	[0.0098-0.0182] unit decrease	Affymetrix [15000001]	N
821	chr13	31017267	31017268	rs12856169	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q12.3	NR	rs12856169-G	0.7716	3E-9		0.0364	[0.024-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
821	chr13	31025451	31025452	rs9315009	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q12.3	NR	rs9315009-C	0.299135	3E-11		0.0226245	[0.016-0.029] unit decrease	NR [19129689] (imputed)	N
821	chr13	31025633	31025634	rs9579574	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	13q12.3	HMGB1	rs9579574-A	0.293	2E-8		0.0202	[0.013-0.027] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
821	chr13	31028051	31028052	rs67455627	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q12.3	NR	rs67455627-C	0.271	2E-10		0.00776701	[0.0054-0.0102] unit decrease	NR [9732723] (imputed)	N
821	chr13	31029930	31029931	rs7986094	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	13q12.3	HMGB1	rs7986094-A	0.3016	2E-8		0.023916	[0.016-0.032] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
821	chr13	31031883	31031884	rs1360485	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	13q12.3	NR	rs1360485-T	0.7	2E-12		0.0141	[0.01-0.018] unit increase	NR [NR]	N
821	chr13	31031883	31031884	rs1360485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	13q12.3		rs1360485-?	NR	3E-8				NR [~ 8900000] (imputed)	N
821	chr13	31031883	31031884	rs1360485	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	13q12.3	NR	rs1360485-T	0.68	3E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix [2446094] (imputed)	N
821	chr13	31031883	31031884	rs1360485	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	13q12.3	NR	rs1360485-T	0.68	5E-8				Affymetrix [2446094] (imputed)	N
821	chr13	31033231	31033232	rs1045411	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q12.3	NA	rs1045411-T	0.2792	1E-15		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
821	chr13	31033231	31033232	rs1045411	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	13q12.3	NR	rs1045411-T	0.2792	1E-15		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
821	chr13	31033231	31033232	rs1045411	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q12.3	NA	rs1045411-T	0.2807	7E-14		0.0139	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
821	chr13	31035467	31035467	rs573849602	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	13q12.3	NR	rs573849602-GA	0.2634	3E-9		0.001557	[0.001-0.0021] unit decrease	Affymetrix [NR] (imputed)	N
821	chr13	31035468	31035468	rs41376448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	13q12.3		rs41376448-GA	NR	2E-10		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
821	chr13	31036641	31036642	rs3742305	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q12.3	NR	rs3742305-G	0.2708	2E-8		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
821	chr13	31036836	31036837	rs1060348	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q12.3	NR	rs1060348-?	NR	1E-8				Illumina [7760689] (imputed)	N
821	chr13	31037902	31037903	rs2249825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	13q12.3	NR	rs2249825-C	NR	3E-10		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr13	31037902	31037903	rs2249825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q12.3	NR	rs2249825-C	NR	5E-11		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
821	chr13	31037902	31037903	rs2249825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q12.3	NR	rs2249825-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
821	chr13	31037902	31037903	rs2249825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q12.3		rs2249825-?	NR	1E-13				NR [~ 8900000] (imputed)	N
821	chr13	31038846	31038846	rs201189183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	13q12.3		rs201189183-GCGCCGC	NR	2E-8		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
821	chr13	31038957	31038963	rs373924172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	13q12.3		rs373924172-C	NR	5E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
821	chr13	31042451	31042452	rs11842871	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q12.3	HMGB1	rs11842871-G	0.7345	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
821	chr13	31043840	31043841	rs928122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q12.3		rs928122-T	NR	1E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
821	chr13	31062189	31062190	rs7330209	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q12.3	HMGB1	rs7330209-C	0.4492	2E-10		0.02281384	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr13	31069969	31069970	rs9578178	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q12.3	NR	rs9578178-A	0.427137	1E-9		0.019137	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
822	chr13	31070211	31070212	rs9579583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q12.3		rs9579583-C	NR	8E-13		0.0664	[0.048-0.085] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
822	chr13	31070211	31070212	rs9579583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q12.3		rs9579583-C	NR	1E-10		0.0596	[0.042-0.078] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
822	chr13	31070211	31070212	rs9579583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q12.3	HMGB1	rs9579583-C	0.9829639	8E-13		0.061211508	[0.044-0.078] unit increase	Affymetrix [93095623] (imputed)	N
822	chr13	31070211	31070212	rs9579583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q12.3	NR	rs9579583-C	0.981773	3E-24		0.072481	[0.059-0.086] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
822	chr13	31070211	31070212	rs9579583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs9579583-C	0.967508	2E-18				Affymetrix, Illumina [20825802] (imputed)	N
822	chr13	31070211	31070212	rs9579583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q12.3	NR	rs9579583-C	0.982872	2E-20		0.069135	[0.054-0.084] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
822	chr13	31070211	31070212	rs9579583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q12.3		rs9579583-?	NR	3E-8				NR [~ 8900000] (imputed)	N
822	chr13	31070211	31070212	rs9579583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q12.3		rs9579583-?	NR	3E-17				NR [~ 8900000] (imputed)	N
822	chr13	31071287	31071287	rs149180914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q12.3	HMGB1	rs149180914-CAGA	0.015137	2E-10		0.059142616	[0.041-0.077] unit increase	Affymetrix [93095623] (imputed)	N
822	chr13	31071287	31071287	rs149180914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q12.3	HMGB1	rs149180914-CAGA	0.015171	3E-10		0.059525676	[0.041-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31071287	31071287	rs149180914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q12.3	HMGB1	rs149180914-CAGA	0.0151559999999999	6E-15		0.0785896	[0.062-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31071287	31071287	rs149180914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q12.3	NR	rs149180914-I	0.015038	3E-11		0.05645	[0.04-0.073] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
822	chr13	31071773	31071774	rs112612237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q12.3	HMGB1	rs112612237-A	0.015598	2E-12		0.063220516	[0.046-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31071773	31071774	rs112612237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q12.3	HMGB1	rs112612237-A	0.015598	3E-12		0.062849164	[0.045-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31071794	31071795	rs9508759	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q12.3	HMGB1	rs9508759-A	0.9879	6E-10		0.1049438	[0.072-0.138] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr13	31073865	31073866	rs9579586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q12.3	HMGB1	rs9579586-C	0.4387	8E-12		0.02451618	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr13	31077592	31077597	rs10541209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q12.3	HMGB1	rs10541209-T	0.440644	3E-11		0.016926	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
822	chr13	31077592	31077597	rs10541209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q12.3	HMGB1	rs10541209-T	0.440641	3E-10		0.014286797	[0.0099-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
822	chr13	31078510	31078511	rs9315015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs9315015-C	0.967039	4E-24				Affymetrix, Illumina [24246363] (imputed)	N
822	chr13	31079183	31079184	rs12861824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q12.3		rs12861824-C	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
822	chr13	31079183	31079184	rs12861824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q12.3	HMGB1	rs12861824-C	0.272657	9E-15		0.020723112	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31079183	31079184	rs12861824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q12.3	HMGB1	rs12861824-C	0.27265	1E-16		0.022149475	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr13	31079183	31079184	rs12861824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q12.3	NR	rs12861824-C	0.272164	4E-16				Affymetrix, Illumina [19872809] (imputed)	N
822	chr13	31079183	31079184	rs12861824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q12.3	NR	rs12861824-C	0.275439	3E-18		0.020977	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
822	chr13	31079183	31079184	rs12861824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q12.3		rs12861824-?	NR	7E-16				NR [~ 8900000] (imputed)	N
822	chr13	31113378	31113379	rs11618202	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Hippocampal volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	13q12.3	HMGB1	rs11618202-?	NR	7E-6		3.0E-4	[NR] unit decrease	Illumina [478011]	N
822	chr13	31131083	31131084	rs7984483	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q12.3	NA	rs7984483-T		6E-9		0.0176556	[0.012-0.024] unit decrease	Illumina [13288253] (imputed)	N
822	chr13	31160298	31160299	rs34344516	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	13q12.3	HMGB1	rs34344516-A	NR	8E-6		0.14705782	[0.082-0.212] unit increase	Affymetrix [9576485] (imputed)	N
823	chr13	31256095	31256096	rs9508814	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q12.3	ALOX5AP	rs9508814-C	0.424	2E-8		0.0067	[0.0043-0.0091] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
823	chr13	31314454	31314455	rs3885907	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+epirubicin+/-5FU)	116 Japanese ancestry cases, 108 Japanese ancestry controls	NA	13q12.3	ALOX5AP	rs3885907-G	0.18	1E-6	(Dominant)	2.66	[1.71-4.13]	Illumina [555600]	N
823	chr13	31314679	31314680	rs3922435	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NA	13q12.3	ALOX5AP	rs3922435-?	NR	7E-6				Illumina [~ 2400000] (imputed)	N
823	chr13	31318307	31318308	rs3803277	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	13q12.3	NR	rs3803277-C	0.537	2E-8		1.06748	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
824	chr13	31341434	31341435	rs4445746	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.3	USPL1	rs4445746-?	NR	7E-6	(PC 38:3)	0.19830374	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
824	chr13	31342877	31342878	rs115015347	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	13q12.3	NR	rs115015347-T	0.9461	4E-7		1.6727	[1.03-2.32] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
824	chr13	31342877	31342878	rs115015347	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q12.3	NR	rs115015347-T	0.9468	6E-7		1.6287	[0.99-2.27] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
824	chr13	31389229	31389230	rs74414330	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	13q12.3	NR	rs74414330-A	NR	5E-6	(female)	0.2082	[0.12-0.3] unit decrease	Illumina [11133794] (imputed)	N
824	chr13	31437539	31437540	rs9533290	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score)	3,991 European and unknown ancestry individuals	NA	13q12.3	LINC00398, TEX26-AS1	rs9533290-G	0.6	7E-7		1.4492754	[1.30-1.60]	Affymetrix, Illumina [~ 8500000] (imputed)	N
824	chr13	31447786	31447787	rs17075144	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q12.3	NR	rs17075144-A	0.01045	2E-8	(CSTA)	0.02811	NR unit increase	Illumina [1671387] (imputed)	N
824	chr13	31454610	31454611	rs213599	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	13q12.3	TEX26-AS1	rs213599-?	NR	4E-6				Illumina [1048575]	N
824	chr13	31455617	31455618	rs11617305	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	13q12.3	LINC00545	rs11617305-?		2E-6				Illumina [1048575]	N
825	chr13	31469664	31469665	rs17534004	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q12.3	NR	rs17534004-?	NR	2E-8	(Japanese)	0.8173	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
825	chr13	31495834	31495835	rs41433250	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	13q12.3	MEDAG	rs41433250-?	0.003795	2E-8		13.98	[12.79-15.17]	Affymetrix [547296]	N
825	chr13	31495834	31495835	rs41433250	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	13q12.3	MEDAG	rs41433250-?	0.003795	2E-8		12.8	[4.095-40.04]	Affymetrix [547296]	N
825	chr13	31508723	31508724	rs1331848	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	13q12.3	NR	rs1331848-?	NR	1E-6		64.2952	[39.08-89.51] unit increase	Illumina [5432814] (imputed)	N
825	chr13	31508723	31508724	rs1331848	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	13q12.3	NR	rs1331848-?	NR	5E-7		64.3429	[39.23-89.46] unit increase	Illumina [5432814] (imputed)	N
826	chr13	31593680	31593681	rs138475706	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q12.3	TEX26	rs138475706-G	0.0217750961487873	4E-7	(G_Acidaminococcus_HB)	1.04023	[0.64-1.44] unit increase	Illumina [7711310] (imputed)	N
826	chr13	31604815	31604816	rs4942783	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q12.3	NR	rs4942783-C	0.5263	6E-7		0.014986195	[0.0091-0.0209] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
826	chr13	31605268	31605269	rs2312971	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q12.3	NR	rs2312971-C	0.5274	3E-6		0.0124	[0.0072-0.0176] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
826	chr13	31610639	31610640	rs7997704	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q12.3	HSPH1	rs7997704-?	NR	8E-6	(ureidopropionic acid)	0.29962814	[0.17-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
826	chr13	31617545	31617546	rs1886046	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA737 sp002451855 abundance in stool	5,959 Finnish ancestry individuals	NA	13q12.3		rs1886046-T	0.0479128	3E-8		0.113036	[0.073-0.153] unit increase	Illumina [7980478] (imputed)	N
826	chr13	31641247	31641248	rs4941735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q12.3		rs4941735-T	0.5703	9E-11		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr13	31641247	31641248	rs4941735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q12.3	Intergenic	rs4941735-T	0.5703	3E-13	(MTAG)	0.0096	[0.0071-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr13	31641247	31641248	rs4941735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q12.3	Intergenic	rs4941735-T	0.5745	3E-8	(MTAG)	0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr13	31643191	31643192	rs9536201	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q12.3	Intergenic	rs9536201-C	0.6184	2E-12	(MTAG)	0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr13	31643191	31643192	rs9536201	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q12.3	Intergenic	rs9536201-C	0.6184	4E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr13	31651791	31651792	rs547851394	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q12.3	NR	rs547851394-?	NR	8E-6		4.479	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
826	chr13	31662986	31662987	rs114300732	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q12.3	NR	rs114300732-T	0.07	2E-8	(adjusted)	0.67	NR	Illumina [9043830] (imputed)	N
826	chr13	31698293	31698294	rs912294	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	13q12.3	intergenic	rs912294-?		5E-6	(disease-free survival)	1.67	[1.34-2.08]	Illumina [729737]	N
827	chr13	31741123	31741124	rs1005349213	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q12.3	NR	rs1005349213-G	0.03833	6E-11	(HIST1H1C)	0.02033	NR unit increase	Illumina [1671387] (imputed)	N
827	chr13	31783976	31783977	rs9529119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q12.3		rs9529119-C	0.2206	2E-13	(conditional-joint)	0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
827	chr13	31785403	31785404	rs9529146	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q12.3		rs9529146-T	0.2282	3E-14		0.0127	[0.0094-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
827	chr13	31785403	31785404	rs9529146	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q12.3	Intergenic	rs9529146-T	0.2282	8E-17	(MTAG)	0.013	[0.0099-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
827	chr13	31799645	31799646	rs9529314	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	13q12.3	NR	rs9529314-A	0.2028	1E-8		0.02909179	[0.019-0.039] unit decrease	NR [NR]	N
827	chr13	31819324	31819325	rs9542236	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	13q12.3	B3GALTL	rs9542236-C	0.44	2E-8		1.1	[1.07-1.14]	Affymetrix, Illumina [2442884] (imputed)	N
827	chr13	31819390	31819391	rs7981280	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q12.3		rs7981280-T	0.33	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
827	chr13	31819390	31819391	rs7981280	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q12.3	B3GALTL	rs7981280-T	0.296	1E-9		0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
827	chr13	31821239	31821240	rs9564692	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	13q12.3	B3GALTL	rs9564692-?	NR	3E-10	(EA)	1.1235955		Illumina [12023830] (imputed)	N
827	chr13	31822600	31822601	rs7987170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q12.3		rs7987170-?	NR	2E-9				NR [~ 8900000] (imputed)	N
827	chr13	31843597	31843598	rs1924817	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	13q12.3	NR	rs1924817-A	0.233	4E-8		1.07929	[1.05-1.11]	Affymetrix, Illumina [7549318] (imputed)	N
827	chr13	31847323	31847324	rs9530139	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	13q12.3	NR	rs9530139-T	0.1955	3E-9		0.0089	[0.006-0.0118] unit decrease	NR [7666894] (imputed)	N
828	chr13	31866836	31866836	rs56038439	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q12.3		rs56038439-?	NR	5E-9		0.0138529	[0.009-0.0187] unit increase	Affymetrix [20259828] (imputed)	N
828	chr13	31874302	31874303	rs1995970	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GLCT	5,364 Icelandic ancestry individuals	NA	13q12.3		rs1995970-C	0.2163	2E-32		0.254338	[0.21-0.3] unit decrease	Illumina [7506463] (imputed)	N
828	chr13	31885906	31885907	rs9544399	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q12.3	B3GALTL	rs9544399-A	0.79140625	2E-19	(B3GALTL, 5727_35_3)	0.27804106	[0.22-0.34] unit increase	Illumina [> 1000000] (imputed)	N
828	chr13	31889039	31889040	rs9544436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q12.3		rs9544436-?	NR	3E-8				NR [~ 8900000] (imputed)	N
828	chr13	31891745	31891746	rs1041073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q12.3	Intergenic	rs1041073-G	0.2251	1E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
828	chr13	31903833	31903834	rs1060709	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q12.3	Intergenic	rs1060709-T	0.7445	3E-13	(MTAG)	0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
828	chr13	31907740	31907741	rs1409379	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	13q12.3	NR	rs1409379-T	0.7641	8E-11		1.017	[1.012-1.022]	NR [8098588] (imputed)	N
828	chr13	31937971	31937972	rs12585794	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q12.3	Intergenic	rs12585794-T	0.7609	3E-9	(MTAG)	0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr13	31962648	31962649	rs150191017	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	13q12.3	AL161616.2	rs150191017-?	NR	7E-8				Illumina [10215072] (imputed)	N
828	chr13	31962648	31962649	rs150191017	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	13q12.3	AL161616.2	rs150191017-?	NR	7E-7	(AA)			Illumina [10215072] (imputed)	N
828	chr13	31968063	31968064	rs189511907	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	13q12.3		rs189511907-T	0.994381	4E-8		0.167798	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
829	chr13	32008007	32008008	rs7984972	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 24 weeks)	78 European ancestry cases, 20 European ancestry controls	NA	13q12.3	intergenic	rs7984972-A	0.57	8E-6	(CGI)	4.17		Illumina [266820] (imputed)	N
829	chr13	32031797	32031798	rs141229873	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	13q12.3		rs141229873-C	0.02766	5E-6		2.841	[1.811-4.457]	Affymetrix [7975321] (imputed)	N
829	chr13	32054198	32054199	rs498396	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q12.3	intergenic	rs498396-A	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
829	chr13	32060529	32060530	rs61953951	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	13q12.3	LOC105370150, RXFP2	rs61953951-?	NR	1E-6		1.89		Illumina [6778521] (imputed)	N
829	chr13	32081198	32081199	rs201447553	33976257	Yusuf I	2021-05-11	Sci Rep	Genetic risk factors for colorectal cancer in multiethnic Indonesians.	Colorectal cancer	89 Indonesian cases, 84 Indonesian controls	NA	13q12.3	intergenic	rs201447553-?	NR	9E-6		10.746	[9.7-11.8]	Affymetrix [524765] (imputed)	N
829	chr13	32084900	32084901	rs60249166	28081371	Sanders AE	2017-01-12	J Dent Res	GWAS Identifies New Loci for Painful Temporomandibular Disorder: Hispanic Community Health Study/Study of Latinos.	Temporomandibular joint disorder	769 Hispanic cases, 9,384 Hispanic controls	768 European ancestry cases, 4,845 European ancestry controls, 144 Hispanic/Latin American cases, 492 Hispanic/Latin American controls, 999 cases, 2,031 controls	13q12.3	RXP2	rs60249166-T	0.18799999999999994	4E-8	(Hispanic women)	1.5503876		Illumina [2100000] (imputed)	N
829	chr13	32087607	32087608	rs277152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.3		rs277152-A	0.3466	3E-18		0.2093586	[0.16-0.26] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
829	chr13	32087607	32087608	rs277152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.3		rs277152-A	0.3463	9E-10		0.10072313	[0.068-0.133] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
829	chr13	32087607	32087608	rs277152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.3		rs277152-A	0.3422	1E-9		6.07859	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
829	chr13	32087607	32087608	rs277152	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q12.3		rs277152-A	0.3463	2E-11		0.09757948	[0.069-0.126] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
829	chr13	32102419	32102420	rs7338599	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	13q12.3	NR	rs7338599-T	0.0871	5E-6		0.2607	[0.15-0.37] unit increase	Illumina [NR] (imputed)	N
830	chr13	32125314	32125315	rs1902272	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	13q12.3	intergenic	rs1902272-C		1E-6		0.3074	unit increase	Illumina [5767231] (imputed)	N
830	chr13	32167716	32167717	rs2085277	30674623	Syreeni A	2019-01-23	Diabetes	Genetic Determinants of Glycated Hemoglobin in Type 1 Diabetes.	Glycated hemoglobin levels in type 1 diabetes	4,622 Finnish ancestry individuals	up to 3,097 individuals	13q12.3	RXFP2	rs2085277-T	0.039	4E-8		0.046	[0.030-0.062] unit increase	Illumina [8354674] (imputed)	N
830	chr13	32179732	32179733	rs9576520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	13q13.1		rs9576520-A	NR	3E-9		0.0366	[0.025-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
830	chr13	32180135	32180136	rs1869800	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q13.1	RXFP2	rs1869800-T	0.4717	6E-15		0.1512	[0.11-0.19] mmHg increase	Affymetrix [NR] (imputed)	N
830	chr13	32181533	32181534	rs7983337	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	13q13.1	RXFP2	rs7983337-C	0.493522	1E-21		0.077298485	[0.061-0.093] unit decrease	Affymetrix [7288503] (imputed)	N
830	chr13	32181956	32181957	rs9603376	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q13.1	RXFP2	rs9603376-A	0.4693	2E-34		0.3258	[0.27-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
830	chr13	32189142	32189143	rs1006096	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	13q13.1	RXFP2	rs1006096-T	0.434974	1E-10		0.039325323	[0.027-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
830	chr13	32191407	32191408	rs9532243	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q13.1	RXFP2	rs9532243-A	0.4808	6E-29		0.2709	[0.22-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
830	chr13	32210100	32210101	rs277136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	13q13.1		rs277136-A	NR	2E-11		0.0525	[0.037-0.068] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
830	chr13	32210100	32210101	rs277136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	13q13.1		rs277136-A	NR	6E-21		0.0753	[0.06-0.091] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
830	chr13	32216906	32216907	rs9603420	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	13q13.1	B3GLCT, RXFP2	rs9603420-?	NR	2E-8				NR [~ 24000000] (imputed)	N
830	chr13	32217239	32217240	rs1200385	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	13q13.1	RXFP2	rs1200385-G	0.438386	2E-11		0.05330472	[0.038-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
830	chr13	32221793	32221794	rs79183898	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs79183898-A	0.07	3E-10		1.33	NR	Illumina [9043830] (imputed)	N
830	chr13	32232682	32232683	rs1623189	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs1623189-T	0.74	1E-31	(adjusted)	0.37	NR	Illumina [9043830] (imputed)	N
831	chr13	32245812	32245813	rs9603502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q13.1		rs9603502-?	NR	2E-12				NR [~ 8900000] (imputed)	N
831	chr13	32339464	32339465	rs7991339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	13q13.1		rs7991339-G	NR	5E-8		0.0727	[0.047-0.099] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
831	chr13	32353099	32353100	rs4943729	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q13.1	NR	rs4943729-A	0.518398	1E-8		0.0154285	[0.0099-0.0209] unit increase	Affymetrix [16580851] (imputed)	N
832	chr13	32454348	32454349	rs353	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q13.1	EEF1DP3	rs353-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
832	chr13	32468086	32468087	rs203425	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q13.1	NR	rs203425-?	NR	2E-8				Illumina [7760689] (imputed)	N
832	chr13	32495093	32495094	rs35269676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q13.1	EEF1DP3	rs35269676-T	0.680543	1E-12		0.01727532	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
833	chr13	32514027	32514028	rs799522	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	13q13.1	NR	rs799522-T	0.1263	6E-6		0.2157	[0.12-0.31] unit increase	Illumina [10677593] (imputed)	N
833	chr13	32541045	32541046	rs203421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q13.1		rs203421-G	NR	5E-8		0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
833	chr13	32595575	32595576	rs75545492	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q13.1		rs75545492-T	0.021884	9E-6		0.10139	[0.057-0.146] unit increase	Affymetrix [15580782] (imputed)	N
833	chr13	32602068	32602069	rs431506	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	13q13.1	NR	rs431506-?		6E-6		1.67	[1.33-2.09]	Illumina [539473] (imputed)	N
833	chr13	32627647	32627648	rs9533282	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	13q13.1	FRY	rs9533282-?	NR	4E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
833	chr13	32627647	32627648	rs9533282	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	13q13.1	FRY	rs9533282-?	NR	2E-6	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
834	chr13	32673041	32673042	rs433669	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q13.1	FRY	rs433669-?		3E-6				Illumina [4322238] (imputed)	N
834	chr13	32677423	32677424	rs448792	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q13.1	FRY	rs448792-?	NR	6E-7		0.211	[0.11-0.31] unit increase	Illumina [at least 13000000] (imputed)	N
834	chr13	32701637	32701638	rs543554	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	13q13.1	FRY	rs543554-?	NR	5E-7		0.993	[0.42-1.56] unit increase	Illumina [at least 13000000] (imputed)	N
834	chr13	32710519	32710520	rs7331540	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q13.1	NR	rs7331540-C	0.442209461024499	5E-6	(IGP29)	0.1407	[0.08-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
834	chr13	32750752	32750753	rs703219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q13.1	FRY	rs703219-T	0.425106	2E-14		0.017584484	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
834	chr13	32763756	32763757	rs9567393	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	13q13.1	NR	rs9567393-?	NR	7E-10		1.08318	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
834	chr13	32763756	32763757	rs9567393	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	13q13.1	NR	rs9567393-?	NR	1E-9		1.09		Affymetrix, Illumina [9938587] (imputed)	N
835	chr13	32773558	32773559	rs2520696	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (continuous)	244 cases, 225 controls		13q13.1	FRY	rs2520696-A		3E-6	(recessive model)	4.0	[2.356-5.644] unit decrease	Illumina [542585]	N
835	chr13	32774532	32774533	rs2520698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.1		rs2520698-?	NR	8E-12				NR [~ 8900000] (imputed)	N
835	chr13	32839989	32839990	rs56404467	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q13.1	FRY	rs56404467-A	0.018496379	7E-9		1.5052111	[1.31093372-1.728280005]	Illumina [10439017] (imputed)	N
835	chr13	32839989	32839990	rs56404467	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	13q13.1	FRY	rs56404467-A	0.019127332	1E-7		1.260481	[1.157199985-1.372980001]	Illumina [10439017] (imputed)	N
835	chr13	32839989	32839990	rs56404467	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	13q13.1	FRY	rs56404467-A	NR	1E-7		1.2	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
835	chr13	32869863	32869864	rs56084662	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	13q13.1	FRY	rs56084662-A	NR	4E-9	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
835	chr13	32883195	32883196	rs60236946	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	13q13.1	ZAR1L	rs60236946-T	0.021	9E-7		1.86	[1.45-2.38]	Illumina [1438399] (imputed)	N
836	chr13	32911887	32911888	rs1801406	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs1801406-G	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32921943	32921944	rs9567578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs9567578-G	NR	3E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32924191	32924192	rs11571696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q13.1	NR	rs11571696-G	NR	3E-9		0.0226	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32924191	32924192	rs11571696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q13.1	NR	rs11571696-G	NR	9E-10		0.0233	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32924191	32924192	rs11571696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs11571696-G	NR	2E-15		0.0303	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32927893	32927894	rs9943876	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	13q13.1		rs9943876-?	NR	4E-6		0.96641	[0.95-0.98]	NR [688737]	N
836	chr13	32928407	32928408	rs1460816	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	13q13.1	BRCA2	rs1460816-G	0.479196	1E-9		1.098901	[1.06-1.12]	Affymetrix, Illumina [up to 9061544] (imputed)	N
836	chr13	32929231	32929232	rs1799955	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	13q13.1	BRCA2	rs1799955-A	0.63	3E-9	(Asian initial, BMI unadjusted)	0.052	[0.034-0.07] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
836	chr13	32929231	32929232	rs1799955	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	13q13.1	BRCA2	rs1799955-A	0.62	3E-8	(BMI adjusted)	0.0367	[0.023-0.05] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
836	chr13	32934910	32934911	rs11571717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q13.1	NR	rs11571717-A	NR	4E-18		0.025	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32934910	32934911	rs11571717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q13.1	NR	rs11571717-A	NR	3E-20		0.0266	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32934910	32934911	rs11571717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs11571717-A	NR	5E-30		0.033	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	2E-9		0.027766	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	3E-8		0.0255796	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	1E-8		0.0270029	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	5E-9		0.0274247	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	1E-8		0.0269946	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	4E-8		0.0259099	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	4E-8		0.0257385	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	1E-8		0.0267658	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	3E-8		0.0261167	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	8E-9		0.0272846	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	7E-9		0.0270939	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	3E-8		0.0260919	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32947133	32947133	rs35596121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	13q13.1		rs35596121-C	0.712152	1E-8		0.0268886	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32953387	32953388	rs4942486	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	13q13.1		rs4942486-?	NR	2E-6		1.05245	[1.03-1.07]	NR [685523]	N
836	chr13	32953387	32953388	rs4942486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-C	NR	1E-23		0.0238	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32953387	32953388	rs4942486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-C	NR	6E-27		0.0255	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32953387	32953388	rs4942486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-C	NR	1E-39		0.0313	[0.027-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr13	32953387	32953388	rs4942486	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	13q13.1		rs4942486-T	0.4875	2E-6		0.7108	[0.42-1] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
836	chr13	32953387	32953388	rs4942486	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-T	NR	6E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
836	chr13	32953387	32953388	rs4942486	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-T	NR	3E-7		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
836	chr13	32953387	32953388	rs4942486	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q13.1	NR	rs4942486-T	0.485	2E-6	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
836	chr13	32953387	32953388	rs4942486	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	13q13.1	BRCA2	rs4942486-T	0.462	5E-14	(Trans-ethnic initial)	0.0243	[0.017-0.032] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
836	chr13	32953387	32953388	rs4942486	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	13q13.1	BRCA2	rs4942486-T	0.48	2E-11		0.024	[NR] unit increase	NR [NR] (imputed)	N
836	chr13	32954560	32954561	rs7328654	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	13q13.1	BRCA2	rs7328654-G	0.475065	6E-10		1.05	[1.04-1.07]	Affymetrix [7600000] (imputed)	N
836	chr13	32954560	32954561	rs7328654	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	13q13.1	BRCA2	rs7328654-G	0.484586	2E-9		1.0526316	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
836	chr13	32959198	32959199	rs2238162	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	13q13.1	BRCA2	rs2238162-C	0.477047	4E-15		0.0164506	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
836	chr13	32959198	32959199	rs2238162	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	13q13.1	BRCA2	rs2238162-C	0.477006	3E-27		0.0225635	[0.018-0.027] unit increase	Affymetrix [NR] (imputed)	N
836	chr13	32959788	32959789	rs206147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs206147-C	NR	1E-11		0.0197	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
836	chr13	32962087	32962088	rs4570704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	13q13.1		rs4570704-T	NR	1E-8		0.0278	[0.018-0.037] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
836	chr13	32968549	32968550	rs11571815	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q13.1	NR	rs11571815-A	0.01	2E-21		2.0	[1.86-2.14]	Illumina [8468885] (imputed)	N
836	chr13	32968809	32968810	rs11571818	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q13.1	BRCA2	rs11571818-C	0.010732274	1E-15		2.1252632	[1.768050378-2.554646438]	Illumina [10439017] (imputed)	N
836	chr13	32968809	32968810	rs11571818	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	13q13.1	BRCA2	rs11571818-C	NR	5E-10	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
836	chr13	32972625	32972626	rs11571833	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of father: Lung cancer (UKB data field 20107_3)	37,124 European ancestry cases, 359,064 European ancestry controls	NA	13q13.1		rs11571833-T	0.009072	8E-12		0.29	[0.21-0.37] unit increase	NR [11842647] (imputed)	N
836	chr13	32972625	32972626	rs11571833	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	13q13.1	NR	rs11571833-T	NR	5E-8		0.5	[0.39-0.64]	NR [NR] (imputed)	N
836	chr13	32972625	32972626	rs11571833	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	13q13.1	NR	rs11571833-T	NR	5E-6		0.67	[0.56-0.79]	NR [NR] (imputed)	N
836	chr13	32972625	32972626	rs11571833	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	13q13.1	BRCA2	rs11571833-?	NR	1E-6		0.36	[NR] unit increase	NR [13607369] (imputed)	N
836	chr13	32972625	32972626	rs11571833	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q13.1	BRCA2	rs11571833-T	0.01	3E-15	(EA)	1.35	[1.23-1.48] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	13q13.1	NR	rs11571833-T	0.01	2E-13		1.58	[1.35-1.84] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	13q13.1	BRCA2	rs11571833-T	0.009562644	3E-8		2.1940665	[1.66261291-2.89539903]	Illumina [10439017] (imputed)	N
836	chr13	32972625	32972626	rs11571833	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	13q13.1	BRCA2	rs11571833-T	0.011377544	6E-8		1.4946846	[1.292873756-1.727997028]	Illumina [10439017] (imputed)	N
836	chr13	32972625	32972626	rs11571833	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	13q13.1	BRCA2	rs11571833-T	0.010904125	6E-16		1.6034979	[1.430101714-1.797917759]	Illumina [10439017] (imputed)	N
836	chr13	32972625	32972626	rs11571833	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	13q13.1	BRCA2	rs11571833-T	NR	8E-12		1.6	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
836	chr13	32972625	32972626	rs11571833	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	13q13.1	NR	rs11571833-?	0.01	6E-6		1.32	[1.20-1.43]	Illumina [10909381] (imputed)	N
836	chr13	32972625	32972626	rs11571833	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	13q13.1	NR	rs11571833-T	0.01	2E-6		1.27	[1.15-1.4]	Affymetrix, Illumina [~ 14000000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	13q13.1	NR	rs11571833-T	0.01	6E-7		1.27	[1.15-1.4]	Affymetrix, Illumina [~ 11600000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	24880342	Wang Y	2014-06-01	Nat Genet	Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.	Lung cancer	3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls	3,589 European ancestry adenocarcinoma cases, 3,202 European ancestry squamous cell carcinoma cases, 3,455 cases, up to 38,295 controls	13q13.1	BRCA2, FRY	rs11571833-T	0.011	2E-19	(All lung cancer)	1.83	[1.61-2.09]	Illumina [8900000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	24880342	Wang Y	2014-06-01	Nat Genet	Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.	Lung cancer	3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls	3,589 European ancestry adenocarcinoma cases, 3,202 European ancestry squamous cell carcinoma cases, 3,455 cases, up to 38,295 controls	13q13.1	BRCA2, FRY	rs11571833-T	0.0105	5E-20	(Squamous cell carcinoma)	2.47	[2.03-3.00]	Illumina [8900000] (imputed)	N
836	chr13	32972625	32972626	rs11571833	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	13q13.1	BRCA2, N4BP2L1	rs11571833-T	0.496	6E-6		1.52	[1.31-1.77]	Illumina [NR]	N
836	chr13	32972625	32972626	rs11571833	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	13q13.1	BRCA2, N4BP2L1, N4BP2L2	rs11571833-T	0.0080	5E-8		1.26	[1.14-1.39]	Affymetrix, Illumina [~ 2600000] (imputed)	N
836	chr13	32976607	32976608	rs17692629	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	13q13.1	NR	rs17692629-A	0.8172	2E-11				Affymetrix, Illumina [at least 2500000] (imputed)	N
836	chr13	32976640	32976645	rs753833181	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	13q13.1	N4BP2L1	rs753833181-?	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
836	chr13	32976640	32976645	rs753833181	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	13q13.1	N4BP2L1	rs753833181-?	NR	1E-12				Affymetrix, Illumina [NR] (imputed)	N
836	chr13	32976640	32976645	rs753833181	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	13q13.1	N4BP2L1	rs753833181-?	NR	7E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
836	chr13	32976640	32976645	rs753833181	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	13q13.1	N4BP2L1	rs753833181-?	NR	4E-14				Affymetrix, Illumina [NR] (imputed)	N
836	chr13	32976640	32976645	rs753833181	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	13q13.1	N4BP2L1	rs753833181-?	NR	3E-6		0.916	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
836	chr13	32976644	32976645	rs61946985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	13q13.1		rs61946985-T	0.548551	6E-11		0.0284382	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
836	chr13	32976644	32976645	rs61946985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	13q13.1		rs61946985-T	0.548551	9E-9		0.0250357	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976644	32976645	rs61946985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	13q13.1		rs61946985-T	0.548551	1E-9		0.0260016	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976644	32976645	rs61946985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	13q13.1		rs61946985-T	0.548551	5E-10		0.0271153	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32976649	32976650	rs61946987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	13q13.1		rs61946987-A	0.548526	3E-11		0.0270809	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32976649	32976650	rs61946987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	13q13.1		rs61946987-A	0.548526	3E-8		0.0239286	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976649	32976650	rs61946987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs61946987-A	0.548526	2E-8		0.0238517	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976650	32976651	rs61946988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	13q13.1		rs61946988-G	0.548538	4E-15		0.0325408	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	2E-9		0.0256976	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	7E-10		0.0260129	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	2E-8		0.0238684	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	4E-8		0.0231538	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	3E-8		0.0234877	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	1E-9		0.0259079	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	9E-11		0.0272817	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	1E-9		0.0261338	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	2E-8		0.0239897	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	4E-9		0.0248156	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	1E-8		0.0239645	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	2E-9		0.0254414	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	9E-9		0.0248472	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
836	chr13	32976653	32976654	rs61946991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	13q13.1		rs61946991-A	0.548351	1E-8		0.0240807	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
836	chr13	32976656	32976657	rs368213791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	13q13.1		rs368213791-G	NR	2E-17		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
836	chr13	32976656	32976657	rs368213791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	13q13.1		rs368213791-G	NR	2E-20		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
836	chr13	32986218	32986219	rs206319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q13.1	NR	rs206319-G	NR	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
836	chr13	32986218	32986219	rs206319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q13.1	NR	rs206319-G	NR	2E-15		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
836	chr13	32988864	32988865	rs151330264	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q13.1	N4BP2L1	rs151330264-A	0.9705	1E-9		0.1111	[0.075-0.147] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
836	chr13	32989793	32989794	rs472873	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q13.1	NR	rs472873-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
836	chr13	32994392	32994393	rs206327	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	13q13.1	N4BP2L1	rs206327-?	NR	7E-7	(women)	0.021	[0.013-0.029] unit increase	Illumina [5527232] (imputed)	N
837	chr13	33040429	33040430	rs703212	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q13.1	N4BP2L2	rs703212-A	0.1797	2E-14		0.0282	[0.021-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
837	chr13	33041624	33041625	rs798268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q13.1		rs798268-G	NR	1E-9		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
837	chr13	33058332	33058333	rs9591012	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	13q13.1	N4BP2L2	rs9591012-G	0.663083	4E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
837	chr13	33058332	33058333	rs9591012	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q13.1	N4BP2L2	rs9591012-A	0.3385	7E-11		0.0441	[0.031-0.057] unit decrease	NR [8041861] (imputed)	N
837	chr13	33071126	33071127	rs743760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q13.1		rs743760-C	0.152231	7E-10		0.0174823	[0.012-0.023] unit increase	Illumina [13479295] (imputed)	N
837	chr13	33071126	33071127	rs743760	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q13.1	MINOS1P1	rs743760-?	NR	5E-11		0.026334524	[0.018-0.034] unit increase	Illumina [27896057] (imputed)	N
837	chr13	33074673	33074674	rs34916533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q13.1		rs34916533-A	NR	4E-15		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
837	chr13	33092928	33092929	rs35193668	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q13.1	N4BP2L2	rs35193668-C	0.63894	3E-13		0.0104702	[0.0077-0.0133] unit increase	Affymetrix [12370749]	N
837	chr13	33101816	33101817	rs2239748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.1		rs2239748-?	NR	8E-28				NR [~ 8900000] (imputed)	N
837	chr13	33116093	33116094	rs562301829	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q13.1		rs562301829-C	0.0010659	3E-6		0.4855	[0.28-0.69] unit decrease	Affymetrix [15580782] (imputed)	N
837	chr13	33125205	33125206	rs7998440	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	13q13.1	N4BP2L2, PDS5B	rs7998440-?	NR	3E-9		0.0320351	[0.021-0.043] unit decrease	Illumina [4804024] (imputed)	N
837	chr13	33125205	33125206	rs7998440	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	13q13.1	intergenic	rs7998440-A	0.3549	1E-10		0.0383	[0.027-0.05] unit decrease	Affymetrix [at least 7947838] (imputed)	N
837	chr13	33126073	33126074	rs7991314	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q13.1	N4BP2L2	rs7991314-T	0.635142	2E-12		0.0135445	[0.0098-0.0173] unit increase	NR [13737936] (imputed)	N
837	chr13	33131341	33131342	rs10083285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q13.1		rs10083285-G	0.375091	1E-12		0.016180526	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr13	33135423	33135424	rs7335710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q13.1		rs7335710-T	0.37072	2E-14		0.0171685	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr13	33135423	33135424	rs7335710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q13.1	NR	rs7335710-T	0.371257	7E-14		0.014918	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
837	chr13	33135423	33135424	rs7335710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q13.1		rs7335710-?	NR	1E-10				NR [~ 8900000] (imputed)	N
837	chr13	33139873	33139873	rs34177026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q13.1		rs34177026-GT	0.390581	2E-25		0.024187801	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr13	33143247	33143248	rs12323184	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q13.1	NR	rs12323184-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
837	chr13	33145297	33145298	rs796246678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q13.1	intergenic	rs796246678-C	0.4001	1E-10		0.02468023	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr13	33145994	33145995	rs7999125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs7999125-A	0.323685	2E-36				Affymetrix, Illumina [24588908] (imputed)	N
837	chr13	33145994	33145995	rs7999125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q13.1	NR	rs7999125-A	0.37209	1E-36		0.024032	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
837	chr13	33146211	33146212	rs12429688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q13.1		rs12429688-T	NR	5E-10		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
837	chr13	33147051	33147052	rs718444	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q13.1	APRIN	rs718444-T	0.37	2E-10		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
837	chr13	33147547	33147548	rs7332115	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	13q13.1	PDS5B	rs7332115-T	0.629333	5E-14		0.00301901	[0.0022-0.0038] unit increase	Affymetrix [13995440] (imputed)	N
837	chr13	33147547	33147548	rs7332115	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q13.1	PDS5B/BRCA2	rs7332115-T	0.62	6E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
837	chr13	33152315	33152316	rs9591136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q13.1		rs9591136-A	NR	1E-24		0.0217	[0.018-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
837	chr13	33152481	33152482	rs9591137	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q13.1		rs9591137-T	0.617	3E-13				Affymetrix [10369434] (imputed)	N
837	chr13	33152481	33152482	rs9591137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q13.1		rs9591137-C	0.382808	6E-15		0.018125016	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr13	33152481	33152482	rs9591137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q13.1		rs9591137-C	0.38282	4E-28		0.025591886	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
837	chr13	33152720	33152721	rs9595847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q13.1		rs9595847-T	0.381909	6E-37		0.029549688	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr13	33159437	33159438	rs9591143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs9591143-C	0.634617	7E-50				Affymetrix, Illumina [17210439] (imputed)	N
837	chr13	33159437	33159438	rs9591143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q13.1	NR	rs9591143-C	0.629458	1E-50		0.029817	[0.026-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
837	chr13	33160704	33160705	rs7994229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs7994229-A	0.338077	2E-14				Affymetrix, Illumina [24246363] (imputed)	N
838	chr13	33168049	33168050	rs9595885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q13.1		rs9595885-?	NR	2E-9				NR [~ 8900000] (imputed)	N
838	chr13	33174224	33174225	rs1324414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q13.1		rs1324414-A	NR	1E-23		0.0146	[0.012-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
838	chr13	33175792	33175793	rs9595893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q13.1	NA	rs9595893-T	0.3597	4E-20		0.0162	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
838	chr13	33176099	33176100	rs113855064	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q13.1	NR	rs113855064-C	0.01	4E-15		1.85	[1.69-2.01]	Illumina [8468885] (imputed)	N
838	chr13	33176099	33176100	rs113855064	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q13.1	NR	rs113855064-C	0.0081	1E-7	(EA)	0.1877	[0.12-0.26] unit increase	Illumina [~ 11800000] (imputed)	N
838	chr13	33176099	33176100	rs113855064	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q13.1	PDS5B	rs113855064-C	0.011187045	9E-12		1.9985485	[1.638002715-2.438455141]	Illumina [10439017] (imputed)	N
838	chr13	33180044	33180044	rs532990872	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q13.1	PDS5B	rs532990872-TC	0.3642	6E-15		0.02947254	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
838	chr13	33184287	33184288	rs9595908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q13.1	NA	rs9595908-T	0.6427	4E-20		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
838	chr13	33184287	33184288	rs9595908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q13.1	NA	rs9595908-T	0.6427	4E-20		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
838	chr13	33184287	33184288	rs9595908	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q13.1	NR	rs9595908-T	NR	5E-23		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
838	chr13	33184287	33184288	rs9595908	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q13.1	PDS5B	rs9595908-T	0.622	6E-6		0.014	[0.0077-0.0195] kg/m2 increase	Affymetrix, Illumina [2550021]	N
838	chr13	33184287	33184288	rs9595908	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q13.1	PDS5B	rs9595908-T	0.616	6E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
838	chr13	33185152	33185153	rs9591165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs9591165-A	0.334371	6E-14				Affymetrix, Illumina [20825802] (imputed)	N
838	chr13	33185296	33185297	rs117964330	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.1	NR	rs117964330-A	0.01045	7E-9	(PRTN3)	0.07166	NR unit increase	Illumina [1671387] (imputed)	N
838	chr13	33190869	33190870	rs55880225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q13.1		rs55880225-C	0.46	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
838	chr13	33198708	33198709	rs11840502	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q13.1	PDS5B	rs11840502-A	0.366	1E-9		0.04	[0.026-0.054] unit decrease	Affymetrix [7947838] (imputed)	N
838	chr13	33237462	33237463	rs4942792	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	13q13.1	PDS5B, N4BP2L2, TOMM22P3	rs4942792-G	0.41	1E-6		0.22	[0.14-0.3] unit decrease	Illumina [8066948] (imputed)	N
838	chr13	33239129	33239130	rs185038874	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	13q13.1	PDS5B	rs185038874-G	0.010740227	2E-10		1.4931829	[1.319945542-1.689156872]	Illumina [10439017] (imputed)	N
838	chr13	33267033	33267038	rs140162028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q13.1		rs140162028-T	NR	7E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
838	chr13	33290858	33290859	rs192470679	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	13q13.1	PDS5B	rs192470679-?		2E-6		2.89	[1.73-4.05] unit increase	Illumina [5908215] (imputed)	N
839	chr13	33292460	33292461	rs188887209	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	13q13.1	PDS5B	rs188887209-?		4E-6	(AA)	0.635	[0.39-0.88] unit increase	Affymetrix, Illumina [NR] (imputed)	N
839	chr13	33343648	33343649	rs117371643	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q13.1	NR	rs117371643-A	0.02	3E-8		1.37	[1.25-1.49]	Illumina [8468885] (imputed)	N
839	chr13	33343648	33343649	rs117371643	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q13.1	PDS5B	rs117371643-A	0.02156595	3E-6		1.4205657	[1.226820574-1.644908003]	Illumina [10439017] (imputed)	N
839	chr13	33348567	33348568	rs7327412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q13.1		rs7327412-A	NR	6E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
839	chr13	33377829	33377830	rs7328213	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	13q13.1		rs7328213-T	0.55	6E-16				NR [NR] (imputed)	N
839	chr13	33377829	33377830	rs7328213	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	13q13.1		rs7328213-T	0.55	6E-15		0.012	% increase	NR [NR] (imputed)	N
839	chr13	33377829	33377830	rs7328213	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	13q13.1		rs7328213-T	0.55	1E-11		0.013	U/L increase	NR [NR] (imputed)	N
839	chr13	33378784	33378785	rs7993153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q13.1		rs7993153-T	0.47291	3E-15		0.017701231	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
839	chr13	33381720	33381721	rs56399737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q13.1		rs56399737-?	NR	1E-17				NR [~ 8900000] (imputed)	N
839	chr13	33387245	33387246	rs990324	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	13q13.1	PDS5B	rs990324-?	NR	5E-6		0.006	unit decrease	Illumina [478011]	N
839	chr13	33421984	33421985	rs116917481	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	13q13.1	NR	rs116917481-T	0.03	3E-6		1.0416667	[-1.07513-3.15847]	Affymetrix [at least 143006] (imputed)	N
840	chr13	33431044	33431045	rs6561600	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	13q13.1	PDS5B, LINC00423	rs6561600-A	0.7392	7E-7	(EA)	0.024	[0.014-0.034] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
840	chr13	33492899	33492900	rs4941702	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	13q13.1	LINC00423	rs4941702-G	NR	3E-6		1.0474	NR	Affymetrix, Illumina [8278136] (imputed)	N
840	chr13	33498034	33498035	rs731089	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	13q13.1	LINC00423, KL	rs731089-A	0.69	1E-6		1.06	[1.04-1.09]	Illumina [161311]	N
840	chr13	33509029	33509030	rs7324259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	13q13.1	NR	rs7324259-T	NR	4E-12		0.0256	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
840	chr13	33509078	33509079	rs6561643	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	13q13.1		rs6561643-A	0.63	2E-14		0.0739	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
840	chr13	33533268	33533269	rs7333961	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	13q13.1	NR	rs7333961-A	0.0462	2E-10		0.327	[0.23-0.43] z score decrease	Affymetrix, Illumina [6439450] (imputed)	N
840	chr13	33554084	33554088	rs67148051	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	13q13.1	KL	rs67148051-AAGAC	0.14	3E-15		1.11	1.08-1.13	Illumina [12557761] (imputed)	N
840	chr13	33554086	33554090	rs2067296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q13.1		rs2067296-A	0.868871495	4E-14		0.101685084	[0.075-0.128] unit decrease	Illumina [13429769] (imputed)	N
840	chr13	33554086	33554090	rs2067296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q13.1		rs2067296-A	0.865877355	8E-9		0.08319757	[0.055-0.111] unit decrease	Illumina [13134967] (imputed)	N
840	chr13	33554086	33554090	rs2067296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q13.1		rs2067296-A	NR	5E-27		0.0298	[0.024-0.035] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
840	chr13	33554301	33554302	rs576674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q13.1		rs576674-A	NR	2E-18		0.0802	[0.062-0.098] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
840	chr13	33554301	33554302	rs576674	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	13q13.1	KL	rs576674-A	0.8386	1E-6		0.0085	[0.005-0.012] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
840	chr13	33554301	33554302	rs576674	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	13q13.1	KL	rs576674-A	0.8447	1E-12		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
840	chr13	33554301	33554302	rs576674	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	13q13.1	KL	rs576674-G	0.170784	6E-8		0.016466	[0.011-0.022] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
840	chr13	33554301	33554302	rs576674	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q13.1	NR	rs576674-G	0.1848	1E-23		0.0612	[0.049-0.073] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
840	chr13	33554301	33554302	rs576674	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q13.1	KL	rs576674-G	0.1694	8E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
840	chr13	33554301	33554302	rs576674	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	13q13.1	KL	rs576674-G	0.167485416105361	2E-11		0.0654	[0.046-0.084] unit increase	NR [5035015] (imputed)	N
840	chr13	33554301	33554302	rs576674	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q13.1	KL	rs576674-G	0.16	9E-13		1.07	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
840	chr13	33554301	33554302	rs576674	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q13.1	KL	rs576674-A	0.837	6E-7	(EA)	0.0734	[0.045-0.102] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
840	chr13	33554301	33554302	rs576674	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	13q13.1	KL	rs576674-G	0.237344679637169	2E-6		0.019068338	[0.011-0.027] unit increase	Illumina [197481]	N
840	chr13	33554351	33554352	rs488166	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	13q13.1		rs488166-G	0.867918873	9E-15		0.91063005	[0.88933745-0.932432404]	Illumina [8919992] (imputed)	N
840	chr13	33554404	33554405	rs488321	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	13q13.1	NR	rs488321-C	0.864	1E-14		0.098	[0.073-0.123] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
841	chr13	33557172	33557173	rs7983505	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q13.1	KL	rs7983505-T	0.157	3E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
841	chr13	33557172	33557173	rs7983505	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q13.1	KL	rs7983505-T	0.165519	3E-8		0.018387	[0.012-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
841	chr13	33557643	33557644	rs57286125	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q13.1	NR	rs57286125-G	0.8324	2E-33		0.0609	[0.051-0.071] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
841	chr13	33560492	33560493	rs11839569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q13.1		rs11839569-G	NR	2E-10		0.0671	[0.047-0.088] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
841	chr13	33562504	33562505	rs7997912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	13q13.1		rs7997912-C	NR	9E-30		0.0316	[0.026-0.037] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
841	chr13	33564862	33564863	rs490049	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	13q13.1	NR	rs490049-?	NR	2E-6	(dominant)	2.0	[1.37-2.94]	Affymetrix [NR]	N
841	chr13	33565151	33565152	rs513320	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	13q13.1	KL, STARD13	rs513320-A	0.134865	8E-6		0.78	[0.699 - 0.87]	Illumina [5397657] (imputed)	N
841	chr13	33566164	33566165	rs7984515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q13.1	NR	rs7984515-G	NR	5E-21		0.0288	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
841	chr13	33566164	33566165	rs7984515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	13q13.1	NR	rs7984515-G	NR	4E-18		0.0271	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
841	chr13	33578232	33578233	rs450789	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	13q13.1	KL	rs450789-A	0.666	3E-6	(Hispanic/Latino+AfricanAmerican)	1.56	[1.30-1.89]	Affymetrix [~ 8700000] (imputed)	N
841	chr13	33672529	33672530	rs614691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q13.1	STARD13	rs614691-T	0.233123	3E-9		0.016074205	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
841	chr13	33680853	33680854	rs642899	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	13q13.1	NR	rs642899-C	0.233	8E-6	(Alcohol dependence)			Illumina [527829]	N
842	chr13	33693836	33693837	rs9315204	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	13q13.1	STARD13	rs9315204-T	0.21	3E-9		1.2	[1.13-1.28]	Illumina [831534] (imputed)	N
842	chr13	33697448	33697449	rs602133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q13.1		rs602133-T	NR	1E-11		0.0128	[0.0091-0.0165] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
842	chr13	33697448	33697449	rs602133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q13.1		rs602133-T	NR	4E-11		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
842	chr13	33697448	33697449	rs602133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q13.1		rs602133-?	NR	2E-13				NR [~ 8900000] (imputed)	N
842	chr13	33700373	33700374	rs1980781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs1980781-G	0.231022	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
842	chr13	33704064	33704065	rs3742321	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	13q13.1	NR	rs3742321-T	0.7644	4E-11		0.1475	[0.1-0.19] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
842	chr13	33704064	33704065	rs3742321	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	13q13.1	NR	rs3742321-T	0.762	5E-15		0.144	[0.11-0.18] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
842	chr13	33704064	33704065	rs3742321	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	13q13.1	STARD13	rs3742321-C		6E-11		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
842	chr13	33718264	33718265	rs585458	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	13q13.1	STARD13	rs585458-T	0.494809787819457	7E-7		0.0026616	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
842	chr13	33723243	33723244	rs12863103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q13.1		rs12863103-T	NR	7E-11		0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q13.1	STARD13	rs12863103-T	0.288317	3E-10		0.015354198	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q13.1	STARD13	rs12863103-T	0.288312	1E-13		0.018061424	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q13.1	STARD13	rs12863103-T	0.288321	1E-12		0.017310563	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs12863103-T	0.279994	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q13.1	NR	rs12863103-T	0.287473	1E-12		0.014558	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q13.1	NR	rs12863103-T	0.280498	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
842	chr13	33723243	33723244	rs12863103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q13.1	NR	rs12863103-T	0.287577	5E-12		0.014119	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
842	chr13	33726567	33726568	rs35469344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q13.1	STARD13	rs35469344-C	0.193095	5E-11		0.019932156	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr13	33728352	33728353	rs17764067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q13.1	NR	rs17764067-G	0.780329	6E-10		0.0207512	[0.014-0.027] unit increase	Affymetrix [16580851] (imputed)	N
842	chr13	33776160	33776161	rs77889880	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs77889880-T	0.1	3E-21	(adjusted)	0.51	NR	Illumina [9043830] (imputed)	N
842	chr13	33776182	33776183	rs797192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.1		rs797192-?	NR	4E-9				NR [~ 8900000] (imputed)	N
842	chr13	33776505	33776506	rs736596	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs736596-T	0.09	3E-12		1.37	NR	Illumina [9043830] (imputed)	N
842	chr13	33777077	33777078	rs2764627	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q13.1	NR	rs2764627-?	NR	3E-39				Affymetrix [NR]	N
842	chr13	33798261	33798262	rs2555603	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	13q13.1	STARD13, RP11-81F11.3	rs2555603-C	0.25	3E-6	(adult)			Illumina [up to 536451]	N
843	chr13	33833809	33833810	rs2555605	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs2555605-T	0.64	5E-8	(adjusted)	1.15	NR	Illumina [9043830] (imputed)	N
843	chr13	33934343	33934344	rs67776313	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.1	NR	rs67776313-A	0.33	8E-12	(adjusted)	0.81	NR	Illumina [9043830] (imputed)	N
843	chr13	33939026	33939027	rs79893474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q13.1		rs79893474-?	NR	8E-8				NR [~ 8900000] (imputed)	N
844	chr13	33968019	33968020	rs73163933	33138277	Cismaru AL	2020-10-29	Genes (Basel)	Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations.	Metamizole-induced agranulocytosis or neutropenia	45 European ancestry cases, 191 European ancestry controls	41 European ancestry cases, 273 European ancestry controls	13q13.1	STARD13	rs73163933-A	NR	1E-6		5.36	[2.73-10.5]	Illumina [~ 7000000] (imputed)	N
844	chr13	34038179	34038180	rs9537521	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	13q13.2	NR	rs9537521-G	NR	7E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
845	chr13	34092164	34092164	rs377429877	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	13q13.2	STARD13, RFC3	rs377429877-C	0.6117	3E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
845	chr13	34188262	34188263	rs9563613	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (headache)	1,758 Japanese ancestry female cases, 3,976 Japanese ancestry female controls	1,763 Japanese ancestry female cases, 3,851 Japanese ancestry female controls	13q13.2	NR	rs9563613-A	0.220356881	4E-6		0.15932293	[0.092-0.227] unit increase	Affymetrix [536506]	N
845	chr13	34208800	34208801	rs7333764	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	13q13.2	NR	rs7333764-C	NR	3E-6		0.2773	[0.16-0.39] SD units decrease	NR [10700000] (imputed)	N
846	chr13	34222260	34222261	rs8001893	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	13q13.2	STARD13	rs8001893-A	0.025	7E-6		0.3	[0.16-0.44] unit increase	Illumina [2316178] (imputed)	N
847	chr13	34343949	34343950	rs17079745	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q13.2	NR	rs17079745-?	NR	6E-34				Affymetrix [NR]	N
848	chr13	34502182	34502183	rs76210638	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	13q13.2	NR	rs76210638-T	0.0862	3E-6		0.2521	[0.15-0.36] unit decrease	Illumina [10677593] (imputed)	N
848	chr13	34511240	34511241	rs9539266	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q13.2	RFC3	rs9539266-C	0.568673158803539	2E-7	(G_Clostridium_sensu_stricto_RNT)	0.142659	[0.089-0.196] unit increase	Illumina [7711310] (imputed)	N
849	chr13	34627268	34627269	rs7139664	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	13q13.2		rs7139664-G	NR	7E-7		0.843578	[0.78-0.91] unit increase	Affymetrix [825927] (imputed)	N
849	chr13	34641561	34641562	rs12868495	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	13q13.2	VDAC1P12	rs12868495-A	0.03	6E-7	(Age 6)	1.22	[1.13-1.32] unit increase	Illumina [2461244] (imputed)	N
849	chr13	34654917	34654918	rs690705	20061627	Heinzen EL	2009-09-11	J Alzheimers Dis	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	13q13.2	RFC3	rs690705-?	0.25	6E-7				Illumina [~ 550000]	N
850	chr13	34760788	34760789	rs149320560	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	13q13.2		rs149320560-T	NR	8E-6		0.67591		Affymetrix, Illumina [62056310] (imputed)	N
851	chr13	34886589	34886590	rs117153530	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q13.2	NR	rs117153530-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
851	chr13	34903091	34903092	rs571411	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.2	RFC3	rs571411-G	0.015	3E-6	(Bone mineral content )	0.02	[NR] kg increase	Illumina [899892]	N
851	chr13	34906054	34906055	rs627871	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.2	RFC3	rs627871-A	0.0070	3E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
851	chr13	34950526	34950527	rs17798800	23374588	Martinelli-Boneschi F	2013-01-29	Neurobiol Aging	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls	13q13.2	intergenic	rs17798800-?	0.71	7E-6	(cases vs. controls)	2.63	[1.72-4]	Illumina [522109]	N
852	chr13	35101171	35101171	rs925578643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.2	NR	rs925578643-G	0.0122	5E-9	(SERPINF1)	0.02353	NR unit increase	Illumina [1671387] (imputed)	N
852	chr13	35124168	35124169	rs530315964	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q13.2	NR	rs530315964-?	NR	5E-6		4.581	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
853	chr13	35165389	35165390	rs9599293	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	13q13.2	NR	rs9599293-?	NR	2E-6		3.033	[1.84-4.23] unit decrease	Illumina [498648]	N
853	chr13	35186451	35186452	rs10507419	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (serum IgG profile)	447 cases, controls	NA	13q13.2	NBEA, LINC00457	rs10507419-A	NR	6E-8		1.49	[1.29-1.72]	NR [NR]	N
853	chr13	35186451	35186452	rs10507419	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (serum Ig lambda profile)	345 cases, controls	NA	13q13.2	LINC00457, NBEA	rs10507419-A	NR	3E-8		1.57	[1.34-1.85]	NR [NR]	N
853	chr13	35194021	35194022	rs1329313	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q13.2	NR	rs1329313-T	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
854	chr13	35319174	35319175	rs9529641	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	13q13.2	NR	rs9529641-A	NR	5E-8		0.1152	[0.074-0.156] unit increase	Illumina [6319684] (imputed)	N
854	chr13	35376356	35376357	rs4943263	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	13q13.2	NR	rs4943263-T	0.27	8E-11		1.17	NR	Illumina [9043830] (imputed)	N
855	chr13	35400569	35400570	rs9542430	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Irritable temperament	775 European ancestry individuals	NA	13q13.2		rs9542430-T	NR	1E-5		0.03006	unit increase	Illumina [2550710] (imputed)	N
855	chr13	35431952	35431953	rs7332270	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	13q13.2	NR	rs7332270-?	NR	1E-6		1.6393442	NR	Affymetrix [~ 18000000] (imputed)	N
856	chr13	35538840	35538841	rs17051768	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	13q13.3	NR	rs17051768-?	NR	3E-6	(AA)	0.397314	[NR] unit increase	Affymetrix [49134253] (imputed)	N
857	chr13	35675850	35675851	rs148909088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs148909088-T	0.01742	2E-8	(NAP1L1)	0.01171	NR unit increase	Illumina [1671387] (imputed)	N
857	chr13	35675850	35675851	rs148909088	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs148909088-T	0.01742	1E-8	(CLIC1)	0.1546	NR unit increase	Illumina [1671387] (imputed)	N
857	chr13	35699898	35699899	rs516842	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	13q13.3	NR	rs516842-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
857	chr13	35768788	35768789	rs17051917	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	13q13.3	intergenic	rs17051917-?	0.89	9E-6		1.19	[1.1-1.28]	Affymetrix, Illumina [~ 2300000] (imputed)	N
858	chr13	35868206	35868207	rs9593057	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	13q13.3	NR	rs9593057-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
859	chr13	35918631	35918632	rs9600550	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q13.3	NR	rs9600550-?	NR	2E-6	(AA)	34.12	[32.08-36.16]	Illumina [905956]	N
859	chr13	35950092	35950093	rs180940944	31277774	Lipunova N	2018-09-15	Eur Urol Oncol	Genome-wide Association Study for Tumour Stage, Grade, Size, and Age at Diagnosis of Non-muscle-invasive Bladder Cancer.	Non-muscle-invasive bladder cancer tumour size	633 European ancestry cases	302 European ancestry cases	13q13.3	NBEA	rs180940944-?	NR	3E-9		0.71	[-0.85800-2.27800] cm increase	Illumina [11914228] (imputed)	N
859	chr13	35950490	35950491	rs9544156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.3		rs9544156-?	NR	2E-8				NR [~ 8900000] (imputed)	N
859	chr13	36024009	36024010	rs9544382	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	13q13.3	NBEA	rs9544382-C	0.34	9E-6		2.52	[1.4-3.64] unit increase	Illumina [6097251] (imputed)	N
859	chr13	36033210	36033211	rs9888464	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q13.3	NBEA	rs9888464-A	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
859	chr13	36033210	36033211	rs9888464	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q13.3	NBEA	rs9888464-A	NR	2E-6				Illumina [up to 11995908] (imputed)	N
860	chr13	36058610	36058611	rs9600832	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	13q13.3	NBEA	rs9600832-C		6E-7	(men)	0.104	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
860	chr13	36066577	36066578	rs9544444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q13.3	Intergenic	rs9544444-A	0.3135	2E-10	(MTAG)	0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
860	chr13	36066577	36066578	rs9544444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q13.3	Intergenic	rs9544444-G	0.6866	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
860	chr13	36074846	36074849	rs112152191	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q13.3	NR	rs112152191-?	NR	4E-6		0.039	[0.022-0.056] unit increase	Illumina [at least 560000] (imputed)	N
860	chr13	36100540	36100541	rs936496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q13.3		rs936496-A	0.6229	4E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
860	chr13	36100540	36100541	rs936496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q13.3	Intergenic	rs936496-A	0.6229	8E-11	(MTAG)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
860	chr13	36103913	36103914	rs9574094	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q13.3		rs9574094-A	0.758	1E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
860	chr13	36104610	36104611	rs9574095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q13.3	Intergenic	rs9574095-A	0.6231	9E-11	(MTAG)	0.011	[0.0077-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
860	chr13	36108344	36108345	rs4943305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q13.3	Intergenic	rs4943305-T	0.6486	5E-9	(MTAG)	0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
860	chr13	36118624	36118625	rs2322668	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q13.3	NBEA	rs2322668-?	NR	9E-6	(guanosine diphosphate)	0.17781177	[0.099-0.256] unit decrease	Affymetrix [at least 2500000] (imputed)	N
860	chr13	36148526	36148527	rs77590619	30277614	Carlson JC	2018-09-11	Genet Epidemiol	Genome-wide interaction studies identify sex-specific risk alleles for nonsyndromic orofacial clefts.	Nonsyndromic cleft lip with or without cleft palate x sex interaction (2df test)	1,293 male cases, 849 female cases, 713 male controls, 987 female controls	NA	13q13.3	NBEA	rs77590619-G	0.256	5E-6				Illumina [up to 34985077] (imputed)	N
861	chr13	36177818	36177819	rs1777672	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	13q13.3	intergenic	rs1777672-?	NR	4E-7	(progression)			Illumina [NR]	N
861	chr13	36213630	36213631	rs9565436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q13.3	NBEA/MIR548F5	rs9565436-A		3E-8		0.303	unit decrease	Affymetrix [at least 2696785] (imputed)	N
861	chr13	36213630	36213631	rs9565436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	13q13.3	NBEA/MIR548F5	rs9565436-A		4E-6		0.233	unit decrease	Affymetrix [at least 2696785] (imputed)	N
861	chr13	36213630	36213631	rs9565436	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q13.3	NBEA/MIR548F5	rs9565436-A		6E-8		0.196	unit decrease	Affymetrix [at least 2696785] (imputed)	N
861	chr13	36229614	36229615	rs9544913	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q13.3	NR	rs9544913-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
861	chr13	36236427	36236428	rs9544930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q13.3		rs9544930-?	NR	5E-8				NR [~ 8900000] (imputed)	N
861	chr13	36246511	36246512	rs45502300	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q13.3	NR	rs45502300-A		9E-11		0.23	[0.15-0.31] unit increase	NR [NR]	N
861	chr13	36246511	36246512	rs45502300	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q13.3	MIR548F5	rs45502300-?		2E-23				Affymetrix, Illumina [NR] (imputed)	N
861	chr13	36269124	36269125	rs10219975	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	13q13.3		rs10219975-?	NR	1E-8		0.045	[0.029-0.061] unit decrease	Affymetrix [9906178] (imputed)	N
861	chr13	36269124	36269125	rs10219975	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	13q13.3		rs10219975-?	NR	6E-6		0.03	[0.016-0.044] unit increase	Affymetrix [9906178] (imputed)	N
861	chr13	36269124	36269125	rs10219975	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	13q13.3		rs10219975-?	NR	6E-6		0.043	[0.023-0.063] unit decrease	Affymetrix [9906178] (imputed)	N
861	chr13	36281897	36281898	rs7329778	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	13q13.3		rs7329778-G	NR	1E-6		1.3	[1.17-1.44]	Illumina [7591411] (imputed)	N
861	chr13	36300044	36300045	rs1998697	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q13.3	NR	rs1998697-A	0.192375	3E-9		0.0233829	[0.016-0.031] unit decrease	NR [19129689] (imputed)	N
861	chr13	36303711	36303712	rs17052708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	13q13.3		rs17052708-?	NR	3E-11				NR [~ 8900000] (imputed)	N
862	chr13	36335725	36335727	rs143756727	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	13q13.3	NR	rs143756727-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
862	chr13	36351765	36351766	rs7328278	22560479	Forno E	2012-05-02	J Allergy Clin Immunol	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 children	13q13.3	NR	rs7328278-C	0.0285	3E-6		0.13	[NR] unit increase	Illumina [512296]	N
862	chr13	36367081	36367082	rs2182486	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	13q13.3	MIR548F5	rs2182486-?	NR	1E-7	(AA)	13.3	[8.4-18.2] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
862	chr13	36370427	36370428	rs6563164	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q13.3	Intergenic	rs6563164-A	0.1323	3E-15	(MTAG)	0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
862	chr13	36370969	36370970	rs9545395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q13.3		rs9545395-T	0.8702	4E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
862	chr13	36381661	36381662	rs9545421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q13.3		rs9545421-T	0.8719	8E-11	(conditional-joint)	0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
862	chr13	36381661	36381662	rs9545421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q13.3	Intergenic	rs9545421-T	0.8719	3E-14	(MTAG)	0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
862	chr13	36386996	36386997	rs55641816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q13.3	Intergenic	rs55641816-T	0.1267	3E-10	(MTAG)	0.0216	[0.015-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
862	chr13	36400297	36400298	rs73176188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q13.3	Intergenic	rs73176188-A	0.8497	2E-11	(MTAG)	0.0167	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
862	chr13	36400297	36400298	rs73176188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q13.3	Intergenic	rs73176188-A	0.8497	3E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
862	chr13	36400741	36400742	rs8000101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q13.3	Intergenic	rs8000101-A	0.8489	2E-9		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
862	chr13	36408523	36408524	rs9545532	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs9545532-C	0.3066	3E-8	(ACSL5)	0.04752	NR unit decrease	Illumina [1671387] (imputed)	N
862	chr13	36412933	36412934	rs117367627	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q13.3	DCLK1	rs117367627-A	0.0108449521047002	3E-6	(G_Ruminococcus_HB)	1.45773	[0.85-2.06] unit decrease	Illumina [7711310] (imputed)	N
863	chr13	36441098	36441099	rs12428086	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	DCLK1	rs12428086-G	0.374	5E-6	(Dinner intake )	0.04	[NR] kcal increase	Illumina [899892]	N
863	chr13	36454192	36454193	rs2051090	23535911	Kitamoto T	2013-03-28	Hum Genet	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Pediatric non-alcoholic fatty liver disease activity score	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	13q13.3	DCLK1	rs2051090-G	0.81	7E-6		1.19	[0.88-1.62]	Illumina [261540]	N
863	chr13	36462676	36462676	rs546049680	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DCLK1	rs546049680-?	NR	4E-9	(female)	1.74106	[NR] unit decrease	Affymetrix [NR] (imputed)	N
863	chr13	36470728	36470728	rs11450161	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	13q13.3	NR	rs11450161-G		6E-6		0.4323	[0.25-0.62] unit decrease	Illumina [12759548] (imputed)	N
863	chr13	36471648	36471649	rs138712069	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	13q13.3	DCLK1	rs138712069-T	0.003	1E-7		19.9	[6.54-60.56]	Illumina [7959153] (imputed)	N
863	chr13	36476446	36476447	rs6563210	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	13q13.3	DCLK1	rs6563210-A	0.56	7E-7		0.039	[0.023-0.055] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
863	chr13	36517429	36517430	rs113325073	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	13q13.3	NR	rs113325073-A	0.013	6E-7		3.969	[2.307-6.828]	Illumina [7585599] (imputed)	N
863	chr13	36519351	36519352	rs9635043	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs9635043-G	0.01394	9E-10	(COQ9)	0.0183	NR unit increase	Illumina [1671387] (imputed)	N
863	chr13	36521459	36521460	rs1936003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q13.3		rs1936003-A	0.33	3E-16		8.19	z score increase	Affymetrix [9061022] (imputed)	N
863	chr13	36525094	36525095	rs9531258	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q13.3		rs9531258-G	0.33	4E-10		6.24	z score increase	Affymetrix [9061022] (imputed)	N
863	chr13	36525094	36525095	rs9531258	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q13.3	NR	rs9531258-G	0.334	7E-12				NR [9056863] (imputed)	N
863	chr13	36531547	36531548	rs34065801	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	13q13.3	FAM48A	rs34065801-C	0.176	6E-6		0.096	[0.055-0.137] cup size increase	Illumina [7422970] (imputed)	N
864	chr13	36603960	36603961	rs140979249	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q13.3	DCLK1	rs140979249-G	0.989	4E-6	(AA)	0.472	NR unit increase	Illumina [NR] (imputed)	N
864	chr13	36612742	36612743	rs80158342	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	13q13.3	NR	rs80158342-?	NR	7E-6		0.7282	[0.44-1.02] unit decrease	Illumina [at least 560000] (imputed)	N
864	chr13	36643600	36643601	rs7323428	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	13q13.3	DCLK1	rs7323428-T	NR	3E-14	(EA)	0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
864	chr13	36643600	36643601	rs7323428	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	13q13.3	DCLK1	rs7323428-T	NR	2E-15		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
864	chr13	36652616	36652617	rs1926320	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	13q13.3	DCLK1	rs1926320-C	0.24	1E-8		0.01	[0.010-0.014] mm2 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
864	chr13	36663301	36663302	rs9315385	17903306	Newton-Cheh C	2007-09-19	BMC Med Genet	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Heart rate variability traits	747 European ancestry individuals from 307 families	NA	13q13.3	DCAMKL1	rs9315385-?	NR	8E-6	(total power)			Affymetrix [70897]	N
864	chr13	36683267	36683268	rs9546383	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	13q13.3	DCLK1	rs9546383-T	0.75	2E-23		0.0099	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
864	chr13	36683267	36683268	rs9546383	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	13q13.3	DCLK1	rs9546383-T	0.75	9E-18		0.00877	[0.0068-0.0108] unit decrease	Affymetrix [at least 8002429] (imputed)	N
864	chr13	36683267	36683268	rs9546383	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	13q13.3	DCLK1	rs9546383-C	0.254	3E-11		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
864	chr13	36683267	36683268	rs9546383	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	13q13.3	DCLK1	rs9546383-C	0.255	5E-18		0.022	[0.016-0.028] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
864	chr13	36694390	36694391	rs9546434	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	13q13.3	DCLK1	rs9546434-T	0.23	4E-8	(EA)	0.022	[0.014-0.030] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
864	chr13	36694390	36694391	rs9546434	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	13q13.3	DCLK1	rs9546434-T	0.23	2E-11		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
865	chr13	36714368	36714369	rs35822625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q13.3	Intergenic	rs35822625-C	0.987	4E-6	(AA)	0.372	NR unit increase	Illumina [NR] (imputed)	N
865	chr13	36746055	36746056	rs76601148	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	13q13.3	Intergenic	rs76601148-G	0.41	4E-6		1.23	[NR]	Illumina [at least 7182761] (imputed)	N
865	chr13	36758595	36758596	rs200203825	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma or monoclonal gammopathy of undetermined significance	4,376 European ancestry multiple myeloma cases, 944 European ancestry monoclonal gammopathy of undetermined significance cases, 422,293 European ancestry controls	NA	13q13.3		rs200203825-AC	NR	3E-10		1.39	[NR]	Illumina [33000000] (imputed)	N
865	chr13	36758595	36758596	rs200203825	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	13q13.3	NR	rs200203825-AC	NR	8E-12		1.33	[NR]	Illumina [33000000] (imputed)	N
865	chr13	36768681	36768682	rs35540212	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q13.3	CCDC169-SOHLH2	rs35540212-A	0.98	2E-6	(AA)	0.313	NR unit increase	Illumina [NR] (imputed)	N
865	chr13	36771016	36771017	rs7327064	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	13q13.3	SOHLH2	rs7327064-T	NR	6E-6	(Foreign Policy)	0.14	[0.079-0.201] unit increase	Illumina [628922]	N
865	chr13	36772380	36772381	rs2149423	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	13q13.3	SOHLH2, CCDC169-SOHLH2	rs2149423-?		4E-7	(DI)	2.18	[1.24-3.12] unit increase	Illumina [693128]	N
866	chr13	36912707	36912708	rs9547344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q13.3		rs9547344-C	NR	3E-12		0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
866	chr13	36926564	36926565	rs7981274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.3		rs7981274-?	NR	5E-11				NR [~ 8900000] (imputed)	N
867	chr13	36972201	36972202	rs79309473	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	13q13.3	SOHLH2, SPG20, SPG20-AS1, CCNA1, SERTM1	rs79309473-T	NR	2E-6		0.2331	[0.14-0.33] unit decrease	Illumina [9290362] (imputed)	N
867	chr13	37033414	37033415	rs9315420	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q13.3	NR	rs9315420-G	0.221	2E-8		0.00746677	[0.0049-0.0101] unit increase	NR [9732723] (imputed)	N
867	chr13	37038561	37038562	rs73534366	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	13q13.3		rs73534366-?	NR	5E-6		0.262	[0.15-0.37] unit increase	Illumina [5082878] (imputed)	N
867	chr13	37055510	37055511	rs9315422	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	13q13.3	intergenic	rs9315422-T	0.277	8E-6		0.18	[NR] unit increase	Illumina [625127]	N
867	chr13	37069560	37069561	rs9576071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	13q13.3		rs9576071-?	NR	5E-8				NR [~ 8900000] (imputed)	N
867	chr13	37070419	37070420	rs1927551	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	13q13.3		rs1927551-?	NR	3E-8				NR [7857346] (imputed)	N
867	chr13	37090525	37090526	rs151142301	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	13q13.3		rs151142301-?	NR	1E-6		0.7263784	[0.43-1.02] unit increase	Illumina [9875426] (imputed)	N
868	chr13	37171090	37171091	rs117302590	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus E sp003521625 abundance in stool	5,959 Finnish ancestry individuals	NA	13q13.3		rs117302590-G	0.017649	2E-9		0.214929	[0.15-0.28] unit increase	Illumina [7980478] (imputed)	N
868	chr13	37175990	37175991	rs76321893	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs76321893-A	0.01045	2E-8	(S100A9)	0.2429	NR unit decrease	Illumina [1671387] (imputed)	N
868	chr13	37175992	37175993	rs11619726	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		13q13.3	intergenic	rs11619726-?	NR	6E-8	(AA)	0.173	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
868	chr13	37208220	37208221	rs79163227	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	13q13.3	SERTM1	rs79163227-G	0.056	3E-8		25.92	[16.78-35.06] unit increase	Illumina [4962728] (imputed)	N
869	chr13	37269042	37269043	rs9531978	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q13.3	RFXAP	rs9531978-?	NR	5E-6	(glycodeoxycholate)	1.1111976	[0.63-1.59] unit decrease	Affymetrix [at least 2500000] (imputed)	N
870	chr13	37417426	37417427	rs609418	25948407	Kertai MD	2015-05-06	BMJ Open	Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.	Perioperative myocardial infarction in coronary artery bypass surgery	112 cases, 1,321 controls	113 European ancestry cases, 509 European ancestry controls	13q13.3	SMAD9, RFXAP	rs609418-?	NR	6E-6		1.67	[1.34-2.09]	Illumina [534390]	N
870	chr13	37422514	37422515	rs511674	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	13q13.3	Intergenic	rs511674-?		6E-6		2.155	[NR]	Affymetrix [492217] (imputed)	N
870	chr13	37433720	37433721	rs563538	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm birth)	916 pre-term birth neonates, 935 term birth neonates	243 pre-term birth neonates, 149 term birth neonates	13q13.3	SMAD9	rs563538-T	0.04	8E-6		2.05	[NR]	Affymetrix [797196]	N
870	chr13	37435667	37435668	rs140971918	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	13q13.3	NR	rs140971918-G	0.63	4E-6		1.68	[1.34-2.09]	Illumina [17125421] (imputed)	N
870	chr13	37449232	37449233	rs2762137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q13.3		rs2762137-?	NR	9E-12				NR [~ 8900000] (imputed)	N
870	chr13	37460647	37460648	rs12427600	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	13q13.3	NR	rs12427600-C	0.24	5E-11		1.09	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
870	chr13	37462009	37462010	rs7333607	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA		NR	rs7333607-G	0.2285	6E-13		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
870	chr13	37469993	37469994	rs55639205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q13.3		rs55639205-?	NR	3E-15				NR [~ 8900000] (imputed)	N
870	chr13	37473242	37473243	rs9547692	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q13.3	SMAD9	rs9547692-A	0.777	2E-6		0.036	[0.02-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
870	chr13	37475568	37475569	rs371471055	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q13.3		rs371471055-?	NR	9E-16		0.0189142	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
870	chr13	37475568	37475569	rs371471055	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q13.3	SMAD9	rs371471055-CT	0.753708	2E-6	(men)	0.0249221	[0.013-0.037] unit decrease	NR [17166351] (imputed)	N
870	chr13	37475568	37475569	rs371471055	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q13.3	SMAD9	rs371471055-CT	0.751978	1E-10		0.0236455	[0.016-0.031] unit decrease	NR [17166351] (imputed)	N
870	chr13	37476122	37476123	rs9652258	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q13.3		rs9652258-?	NR	1E-15		0.0189177	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
870	chr13	37480200	37480201	rs9576132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.3		rs9576132-?	NR	3E-10				NR [~ 8900000] (imputed)	N
871	chr13	37487020	37487021	rs556429	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q13.3	SMAD9	rs556429-A	0.2276	1E-8		0.0386	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
871	chr13	37491649	37491650	rs12427846	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q13.3	SMAD9	rs12427846-T	0.753703	7E-16		0.0174762	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
871	chr13	37494633	37494634	rs61947049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	13q13.3		rs61947049-T	NR	1E-8		0.0679	[0.045-0.091] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
871	chr13	37570730	37570731	rs17054796	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	13q13.3	ALG5	rs17054796-C	0.25	2E-7	(AA)	0.04	unit increase	Affymetrix [5396780] (imputed)	N
871	chr13	37577341	37577342	rs76406842	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q13.3	NR	rs76406842-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
871	chr13	37617298	37617299	rs1211337	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	13q13.3	FAM48A	rs1211337-A	0.25	1E-7	(AA)	0.04	unit increase	Affymetrix [5396780] (imputed)	N
872	chr13	37623091	37623092	rs35914801	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q13.3	SUPT20H	rs35914801-A	0.895636	1E-19		0.033566892	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
873	chr13	37762636	37762637	rs2323397	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		13q13.3	CSNK1A1L	rs2323397-A	NR	3E-6		0.0357	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
873	chr13	37798357	37798358	rs8000449	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,420 European ancestry individuals	NA	13q13.3		rs8000449-T	0.42	2E-8		0.48	[0.3-0.66] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
873	chr13	37798357	37798358	rs8000449	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes	2,500 European ancestry individuals	NA	13q13.3		rs8000449-T	0.42	5E-7		0.32	[0.2-0.44] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
873	chr13	37866896	37866897	rs1408236	28317342	Hivert MF	2017-03-20	Obesity (Silver Spring)	Genetic determinants of adiponectin regulation revealed by pregnancy.	Adiponectin levels in pregnancy	1,322 European ancestry individuals	522 European ancestry individuals, 174 French Canadian founder individuals	13q13.3	CSNK1A1L	rs1408236-A	0.98	5E-6	(adjusted for BMI, height & mean arterial pressure)	0.644	[0.37-0.92] unit decrease	Illumina [NR]	N
874	chr13	37943190	37943191	rs7335815	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	13q13.3	RPS12P24, POSTN	rs7335815-T	0.109	9E-7		0.056	[NR] unit increase	Affymetrix [9882017] (imputed)	N
874	chr13	37961017	37961018	rs17833980	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	13q13.3		rs17833980-A	0.02	3E-6		1.25	unit increase	Affymetrix [NR] (imputed)	N
874	chr13	37961017	37961018	rs17833980	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	13q13.3		rs17833980-A	0.02	3E-6		1.82	unit increase	Affymetrix [NR] (imputed)	N
875	chr13	38035188	38035189	rs1590305	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	13q13.3	intergenic	rs1590305-?	NR	3E-6	(NeckZ1rm)			Affymetrix [70897]	N
875	chr13	38055768	38055769	rs1407608	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels x sex interaction in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	13q13.3	LINC01048	rs1407608-?	0.17	7E-6				Illumina [628376]	N
875	chr13	38065445	38065446	rs9646096	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	13q13.3	POSTN, TRPC4	rs9646096-?	0.05	6E-6	(EA)	1.35	[1.19-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
875	chr13	38065445	38065446	rs9646096	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	13q13.3	POSTN, TRPC4	rs9646096-?	0.05	6E-6		1.35	[1.19-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
875	chr13	38069808	38069809	rs9547908	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POSTN	5,367 Icelandic ancestry individuals	NA	13q13.3		rs9547908-C	0.2937	8E-28		0.215628	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
875	chr13	38069808	38069809	rs9547908	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POSTN	5,366 Icelandic ancestry individuals	NA	13q13.3		rs9547908-C	0.2937	4E-36		0.238901	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
875	chr13	38070548	38070549	rs4941870	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q13.3	POSTN	rs4941870-G	0.71375	3E-16	(POSTN, 6645_53_3)	0.21204379	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
875	chr13	38089170	38089171	rs962462	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q13.3	POSTN	rs962462-A	0.71359375	9E-23	(POSTN, 6650_20_3)	0.24413839	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
875	chr13	38102449	38102450	rs17055969	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	13q13.3		rs17055969-A	0.919303	7E-6		0.0160544	[0.0091-0.0231] unit decrease	Illumina [13900000] (imputed)	N
875	chr13	38102449	38102450	rs17055969	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	13q13.3		rs17055969-A	0.917267	4E-6		0.022975	[0.013-0.033] unit decrease	Illumina [13900000] (imputed)	N
875	chr13	38111145	38111146	rs9532077	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q13.3	LINC00547	rs9532077-?	NR	2E-7		0.01690701	[0.011-0.023] unit increase	Illumina [27896057] (imputed)	N
875	chr13	38116391	38116392	rs9547929	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	13q13.3	NR	rs9547929-?	NR	6E-6		3.001	[NR]	Illumina [4196861] (imputed)	N
875	chr13	38117550	38117551	rs7321631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	13q13.3		rs7321631-C	NR	3E-8		0.0585	[0.038-0.079] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
875	chr13	38118530	38118531	rs9594221	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	13q13.3	intergenic	rs9594221-?	NR	7E-6		2.98	[1.85-4.79]	Illumina [4196861] (imputed)	N
875	chr13	38119802	38119803	rs9547937	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POSTN	5,366 Icelandic ancestry individuals	NA	13q13.3		rs9547937-T	0.3848	6E-18		0.158662	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
875	chr13	38122527	38122528	rs9603222	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q13.3	POSTN	rs9603222-T	0.6028125	2E-12	(POSTN, 3457_57_1)	0.16495073	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
876	chr13	38156537	38156538	rs117103342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POSTN	5,367 Icelandic ancestry individuals	NA	13q13.3		rs117103342-T	0.01397	5E-26		0.821808	[0.67-0.97] unit decrease	Illumina [7506463] (imputed)	N
876	chr13	38156537	38156538	rs117103342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POSTN	5,366 Icelandic ancestry individuals	NA	13q13.3		rs117103342-T	0.01397	4E-51		1.1203	[0.97-1.27] unit decrease	Illumina [7506463] (imputed)	N
876	chr13	38156537	38156538	rs117103342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q13.3	POSTN	rs117103342-T	0.008	7E-23	(Periostin, POSTN.6645.53.3)	1.34	[1.07-1.61] unit decrease	Affymetrix [10572788] (imputed)	N
876	chr13	38156537	38156538	rs117103342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q13.3	POSTN	rs117103342-T	0.008	2E-28	(Periostin, POSTN.6650.20.3)	1.5	[1.23-1.77] unit decrease	Affymetrix [10572788] (imputed)	N
876	chr13	38159632	38159633	rs12871092	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	13q13.3	NR	rs12871092-?	NR	3E-9	(Periostin)			Illumina [514227]	N
876	chr13	38172866	38172867	rs17197663	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q13.3	NR	rs17197663-A	0.125	2E-8		0.021587353	[0.014-0.029] unit decrease	NR [~ 10000000] (imputed)	N
876	chr13	38176413	38176414	rs17197978	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q13.3		rs17197978-G	0.87	9E-12		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
876	chr13	38196962	38196963	rs7139978	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	13q13.3	NR	rs7139978-A	0.4131	2E-6		0.0174	[0.01-0.025] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
876	chr13	38204276	38204277	rs73184528	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q13.3	NR	rs73184528-T	0.123	3E-11		0.0109534	[0.0077-0.0142] unit decrease	NR [9732723] (imputed)	N
876	chr13	38220160	38220161	rs9547996	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	13q13.3	chr13mb38	rs9547996-G	0.247278574	2E-7		0.164	[0.1-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
876	chr13	38260407	38260408	rs6563569	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	13q13.3	Mir_720, TRPC4, POSTN, FLJ34747	rs6563569-C	0.44	6E-6		1.16	[NR]	Illumina [7659573] (imputed)	N
877	chr13	38285664	38285665	rs9576344	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	13q13.3	NR	rs9576344-?	NR	2E-6		0.0852399	[0.05-0.12] unit decrease	NR [13958389] (imputed)	N
877	chr13	38350192	38350193	rs933006	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	13q13.3	TRPC4	rs933006-A	0.32	4E-8		0.0143	[0.0084-0.0202] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
877	chr13	38359675	38359676	rs4264267	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q13.3	NR	rs4264267-T	0.527042	7E-9	(Conditioned on chr13:38172867)	0.014792083	[0.0098-0.0198] unit increase	NR [~ 10000000] (imputed)	N
877	chr13	38359683	38359684	rs4460944	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	13q13.3	TRPC4	rs4460944-C	0.527	2E-8		0.0129	[0.0084-0.0174] unit increase	Illumina [~ 250000] (imputed)	N
877	chr13	38360727	38360728	rs7993498	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	13q13.3	TRPC4	rs7993498-T		5E-10		0.978	[NR]	Affymetrix [up to 79000000] (imputed)	N
877	chr13	38360727	38360728	rs7993498	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q13.3	NR	rs7993498-T	0.439	2E-10		0.00696422	[0.0048-0.0091] unit decrease	NR [9732723] (imputed)	N
877	chr13	38363449	38363450	rs9548050	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	TRPC4	rs9548050-G	0.24	9E-6	(Protein deposition )	0.03	[NR] kcal/d increase	Illumina [899892]	N
877	chr13	38363449	38363450	rs9548050	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q13.3	TRPC4	rs9548050-G	0.24	9E-6	(Protein )	0.03	[NR] kg/y increase	Illumina [899892]	N
878	chr13	38423004	38423005	rs1337602	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs1337602-C	0.01916	1E-8	(NUCB1)	0.02865	NR unit increase	Illumina [1671387] (imputed)	N
878	chr13	38450234	38450235	rs12431204	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q13.3	NR	rs12431204-A	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
878	chr13	38481291	38481292	rs9603276	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 11)	2,595 Tanzanian ancestry individuals	NA	13q13.3		rs9603276-?	NR	2E-9				Illumina [NR] (imputed)	N
878	chr13	38528376	38528377	rs1337598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	13q13.3	NR	rs1337598-?	NR	2E-6		3.1279	[0.99-5.27] unit decrease	Illumina [at least 560000] (imputed)	N
878	chr13	38531580	38531581	rs9548119	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	13q13.3	intergenic	rs9548119-A	0.22	9E-6		0.03	[NR] unit increase	Illumina [2380486] (imputed)	N
879	chr13	38558010	38558011	rs11308613	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	13q13.3	TRPC4	rs11308613-?	0.0	2E-8				Affymetrix [547296]	N
879	chr13	38615255	38615256	rs74709575	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	13q13.3	TRPC4	rs74709575-C		1E-6		4.52	[1.19-17.19]	Affymetrix, Illumina [NR] (imputed)	N
880	chr13	38737820	38737821	rs17057285	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	13q13.3	UFM1	rs17057285-?	NR	3E-8		2.3809524	[1.79-3.33]	Affymetrix, Illumina [~ 2600000] (imputed)	N
881	chr13	38814938	38814939	rs6563592	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	13q13.3		rs6563592-T	NR	2E-8		0.95		Illumina [NR] (imputed)	N
881	chr13	38829166	38829167	rs646299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q13.3		rs646299-?	NR	1E-9				NR [~ 8900000] (imputed)	N
881	chr13	38829621	38829622	rs648516	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q13.3	NR	rs648516-T	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
881	chr13	38830141	38830142	rs1411740	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	13q13.3	UFM1	rs1411740-A	NR	8E-7		1.051	[1.03-1.07]	Illumina [6627481] (imputed)	N
881	chr13	38830141	38830142	rs1411740	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	13q13.3	intergenic	rs1411740-A	NR	2E-7		1.053	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
881	chr13	38844438	38844439	rs2088911	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	13q13.3	UFM1	rs2088911-G	NR	3E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
881	chr13	38873379	38873379	rs145495178	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	13q13.3	NR	rs145495178-?	NR	6E-6		0.31185	[0.18-0.45] unit increase	NR [13958389] (imputed)	N
882	chr13	38934076	38934077	rs61947646	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	13q13.3	UFM1	rs61947646-T		9E-6		3.4562	[1.93-4.98] unit decrease	Illumina [7576458] (imputed)	N
882	chr13	38939828	38939829	rs78992800	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	13q13.3	UFM1	rs78992800-?	NR	2E-6				Illumina [7401356] (imputed)	N
882	chr13	38967903	38967904	rs17057957	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs17057957-T	0.01045	1E-9	(SERPINA1)	3.244	NR unit increase	Illumina [1671387] (imputed)	N
883	chr13	39156385	39156386	rs80224738	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q13.3	NR	rs80224738-C	0.01045	3E-8	(ECI1)	0.3056	NR unit increase	Illumina [1671387] (imputed)	N
884	chr13	39235689	39235690	rs2496411	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q13.3	NR	rs2496411-?	NR	5E-10				Affymetrix [NR]	N
884	chr13	39261150	39261151	rs9634754	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q13.3	FREM2	rs9634754-G	0.69	4E-9		0.41	[0.27-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
884	chr13	39261150	39261151	rs9634754	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	13q13.3	FREM2	rs9634754-G	0.7068	4E-9		0.429	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
885	chr13	39343821	39343822	rs9603422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q13.3		rs9603422-?	NR	5E-29				NR [~ 8900000] (imputed)	N
885	chr13	39343821	39343822	rs9603422	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	13q13.3	FREM2	rs9603422-?	NR	1E-10		1.0828371	NR	Affymetrix [9154080] (imputed)	N
885	chr13	39350889	39350890	rs4526895	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	13q13.3	FREM2	rs4526895-C	0.414	2E-6	(Genotype model)	1.38	[0.93-2.04]	Illumina [508761]	N
885	chr13	39370594	39370595	rs9594293	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	13q13.3	FREM2	rs9594293-A	0.15	7E-6		0.229	[0.13-0.33] unit decrease	Illumina [546677]	N
885	chr13	39371590	39371590	rs200404865	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	13q13.3		rs200404865-AT	NR	1E-6		0.21698	[0.13-0.3] unit increase	Illumina [NR] (imputed)	N
885	chr13	39418409	39418410	rs9548491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q13.3		rs9548491-?	NR	4E-8				NR [~ 8900000] (imputed)	N
885	chr13	39431834	39431835	rs115764867	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	13q13.3		rs115764867-?	NR	2E-6		0.8628929	[0.51-1.21] unit increase	Illumina [9906551] (imputed)	N
886	chr13	39469338	39469339	rs4146173	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q13.3	NR	rs4146173-?		8E-6				Illumina [4322238] (imputed)	N
886	chr13	39498264	39498265	rs1413102	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	13q13.3		rs1413102-?	NR	5E-7		1.29878	[1.2-1.4]	NR [663083]	N
886	chr13	39500887	39500888	rs147482720	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	13q13.3		rs147482720-T	NR	4E-6		1.89745	[1.63-2.17] unit increase	Affymetrix [825927] (imputed)	N
886	chr13	39516626	39516627	rs9315632	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	13q13.3	STOML3	rs9315632-?	0.28	3E-6	(WHR)			Illumina [308011]	N
886	chr13	39533189	39533190	rs114648606	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	13q13.3		rs114648606-G	NR	5E-7		0.7975	unit increase	Illumina [NR] (imputed)	N
886	chr13	39562259	39562260	rs191557334	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	13q13.3	STOML3, PROSER1, NHLRC3, ANKRD26P2	rs191557334-G	NR	5E-6	(daytime resting duration, weekdays)	0.3016	[0.17-0.43] unit increase	Affymetrix [7141204] (imputed)	N
887	chr13	39624821	39624822	rs190094306	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	13q13.3	NHLRC3, PROSER1	rs190094306-?	NR	4E-6		1.62	[1.32-1.99]	Affymetrix, Illumina [11480632] (imputed)	N
888	chr13	39734375	39734376	rs183751764	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	13q13.3	NR	rs183751764-T		2E-6		0.7904	[0.47-1.11] SD units decrease	NR [10700000] (imputed)	N
888	chr13	39806968	39806969	rs75774241	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	13q13.3		rs75774241-?	NR	2E-8		1.5536	[1.01-2.1] unit decrease	Affymetrix [NR] (imputed)	N
888	chr13	39838906	39838907	rs17059596	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q13.3	NR	rs17059596-?	NR	1E-12				Affymetrix [NR]	N
889	chr13	39903143	39903144	rs78375425	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q13.3	Intergenic	rs78375425-?		3E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
889	chr13	39903143	39903144	rs78375425	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q13.3	Intergenic	rs78375425-?		3E-6		1.62	[1.33-1.99]	Illumina [7645193] (imputed)	N
889	chr13	39903242	39903243	rs6563695	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q13.3	LHFP	rs6563695-?	NR	5E-6	(EA)	3.65	[2.09-6.36]	Illumina [2485249] (imputed)	N
890	chr13	39980684	39980685	rs9576788	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q13.3	NR	rs9576788-?	NR	1E-6		0.0077	[0.0038-0.0116] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr13	39980828	39980829	rs9566421	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q13.3	NR	rs9566421-?	NR	1E-6		0.0078	[0.0039-0.0117] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr13	39982143	39982144	rs9566425	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q13.3	NR	rs9566425-?	NR	1E-6		0.0079	[0.004-0.0118] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr13	39983131	39983132	rs9576793	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q13.3	NR	rs9576793-?	NR	1E-6		0.0079	[0.004-0.0118] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr13	39983670	39983671	rs9315681	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	13q13.3	NR	rs9315681-?	NR	1E-6		0.0079	[0.004-0.0118] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
890	chr13	40038473	40038474	rs17059979	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q13.3	Intergenic	rs17059979-?	NR	9E-6		2.04	[NR]	Affymetrix [492217] (imputed)	N
890	chr13	40044966	40044967	rs4499118	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q13.3	NA	rs4499118-A	0.4024	9E-9	(Female)	1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
890	chr13	40078539	40078540	rs8002574	28775256	Kawashima-Kumagai K	2017-08-03	Sci Rep	A genome-wide association study identified a novel genetic loci STON1-GTF2A1L/LHCGR/FSHR for bilaterality of neovascular age-related macular degeneration.	Laterality in neovascular age-related macular degeneration	803 Japanese ancestry unilateral cases, 321 Japanese ancestry bilateral cases	132 Japanese ancestry unilateral cases, 36 Japanese ancestry bilateral cases, 78 Asian ancestry unilateral cases, 24 Asian ancestry bilateral cases	13q14.11	LHFP	rs8002574-C	0.88	1E-6	(Adjusted)	2.27	[1.64-3.13]	Illumina [581252]	N
891	chr13	40118067	40118068	rs9315702	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	13q14.11	LHFP	rs9315702-A	0.44	2E-8	(Hippocampal volume)			Illumina [2131250] (imputed)	N
891	chr13	40236600	40236601	rs7999758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs7999758-?	NR	6E-17				NR [~ 8900000] (imputed)	N
892	chr13	40239784	40239785	rs6563739	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	13q14.11	COG6	rs6563739-G	0.34	2E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
892	chr13	40297796	40297797	rs9548897	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.11	COG6	rs9548897-G	0.49	7E-6	(EA)	2.76	[2.31-3.21]	Illumina [905956]	N
892	chr13	40300544	40300545	rs9548898	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11		rs9548898-A	0.5109	3E-9		0.0478	[0.032-0.064] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
892	chr13	40308306	40308307	rs9603605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q14.11		rs9603605-?	NR	5E-14				NR [~ 8900000] (imputed)	N
892	chr13	40318818	40318819	rs9603608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	13q14.11		rs9603608-?	NR	8E-8				NR [~ 8900000] (imputed)	N
892	chr13	40319953	40319954	rs28635831	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	13q14.11	COG6	rs28635831-?	NR	4E-9		1.044	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
892	chr13	40319953	40319954	rs28635831	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	13q14.11	COG6	rs28635831-A	NR	1E-7		1.039	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
892	chr13	40326281	40326282	rs9943	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	13q14.11	COG6, MIR4305, LHFP, LINC00332, LINC00548, LINC00598	rs9943-A	0.64822	4E-9		1.0398253	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
892	chr13	40333368	40333369	rs34394770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q14.11		rs34394770-C	0.299469	3E-11		0.014662	[0.01-0.019] unit increase	Illumina [13479295] (imputed)	N
892	chr13	40333368	40333369	rs34394770	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	13q14.11		rs34394770-T	0.652	9E-24				Affymetrix [10369434] (imputed)	N
892	chr13	40333368	40333369	rs34394770	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	13q14.11	COG6	rs34394770-T	0.643	5E-8		1.11	[1.07-1.15]	Illumina [up to 4778154] (imputed)	N
892	chr13	40333368	40333369	rs34394770	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	13q14.11	COG6	rs34394770-T	0.643	3E-8	(EA)	1.16	[1.1-1.22]	Illumina [up to 4778154] (imputed)	N
892	chr13	40334851	40334852	rs9603612	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	13q14.11	COG6	rs9603612-?		3E-13	(same effect)	1.098901	[NR]	NR [at least 309839] (imputed)	N
892	chr13	40345465	40345466	rs7320598	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q14.11	COG6	rs7320598-?	NR	5E-16		0.02530836	[0.019-0.031] unit increase	Illumina [27896057] (imputed)	N
892	chr13	40350911	40350912	rs7993214	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	13q14.11	COG6	rs7993214-G	0.65	2E-6		1.06	[1.03-1.09]	Illumina [161311]	N
892	chr13	40350911	40350912	rs7993214	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	13q14.11	COG6	rs7993214-?	NR	5E-6		1.1104941		Illumina [129464] (imputed)	N
892	chr13	40350911	40350912	rs7993214	18369459	Liu Y	2008-04-04	PLoS Genet	A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.	Psoriasis	218 European ancestry cases, 519 European ancestry controls	1,153 European ancestry cases, 1,217 European ancestry controls	13q14.11	COG6	rs7993214-?	0.65	2E-6		1.41	[1.22-1.61]	Illumina [305983]	N
892	chr13	40353390	40353390	rs34270626	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	13q14.11	COG6	rs34270626-GT	0.648976	6E-10		1.0397792	[1.02701689441644-1.05270006273213]	NR [9572556] (imputed)	N
892	chr13	40354199	40354200	rs12872801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs12872801-?	NR	5E-40				NR [~ 8900000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	13q14.11		rs9532434-T	NR	2E-19		0.89	[0.87-0.91]	NR [13810676] (imputed)	N
892	chr13	40355912	40355913	rs9532434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11	COG6	rs9532434-C	0.64924	7E-34		0.028296808	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
892	chr13	40355912	40355913	rs9532434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11	COG6	rs9532434-C	0.649252	5E-32		0.027594073	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
892	chr13	40355912	40355913	rs9532434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs9532434-C	0.661706	8E-36				Affymetrix, Illumina [19872809] (imputed)	N
892	chr13	40355912	40355913	rs9532434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q14.11	NR	rs9532434-C	0.649421	5E-38		0.026887	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
892	chr13	40355912	40355913	rs9532434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	13q14.11	COG6	rs9532434-C	0.6503	1E-10		0.02403834	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	13q14.11	COG6	rs9532434-C	0.6503	2E-9		0.02241523	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	13q14.11	COG6	rs9532434-C	0.6503	2E-12		0.02640767	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	13q14.11	COG6	rs9532434-C	0.6503	2E-10		0.0238945	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	13q14.11	COG6	rs9532434-C	0.6503	1E-11		0.02533407	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr13	40355912	40355913	rs9532434	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	13q14.11	COG6	rs9532434-?	0.64	5E-8	(additive model)	1.1904762	[1.12-1.27]	Illumina [123003]	N
892	chr13	40357676	40357677	rs17591266	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	13q14.11	COG6	rs17591266-G	NR	2E-7		1.0586	NR	Affymetrix, Illumina [8278136] (imputed)	N
892	chr13	40362228	40362229	rs8002731	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	13q14.11	NR	rs8002731-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
892	chr13	40368068	40368069	rs9603616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	13q14.11		rs9603616-T	NR	4E-8		0.0408	[0.026-0.055] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
892	chr13	40368068	40368069	rs9603616	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	13q14.11	COG6	rs9603616-T	NR	2E-12		0.10137	[0.073-0.129] unit decrease	Illumina [8380626] (imputed)	N
892	chr13	40368068	40368069	rs9603616	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	13q14.11	COG6	rs9603616-T	0.34	8E-11	(EA)	0.10756	[0.075-0.14] unit decrease	Illumina [8380626] (imputed)	N
892	chr13	40368068	40368069	rs9603616	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	13q14.11	COG6	rs9603616-C	0.68	2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
892	chr13	40368068	40368069	rs9603616	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	13q14.11	COG6	rs9603616-C	0.66	3E-11	(EA)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
893	chr13	40371376	40371377	rs9603618	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	13q14.11	COG6	rs9603618-G	0.73	5E-9		1.1111112	[1.08-1.15]	Illumina [133816] (imputed)	N
893	chr13	40371421	40371422	rs116669420	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	13q14.11	NR	rs116669420-C	NR	6E-6		2.285	[1.60-3.27]	Illumina [13976150] (imputed)	N
893	chr13	40390057	40390058	rs9548943	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q14.11		rs9548943-C	0.36	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
893	chr13	40393369	40393370	rs80293200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs80293200-?	NR	6E-9				NR [~ 8900000] (imputed)	N
893	chr13	40396136	40396137	rs77868089	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q14.11	NR	rs77868089-A	NR	3E-6		1.19	[NR]	Illumina [7158791] (imputed)	N
893	chr13	40495460	40495461	rs9548980	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11		rs9548980-T	0.413	4E-7		0.0422	[0.026-0.058] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
894	chr13	40503571	40503572	rs9548987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11		rs9548987-G	0.47282	1E-11		0.015176305	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
894	chr13	40505509	40505510	rs9548988	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	13q14.11	intergenic	rs9548988-T	0.46	3E-7		1.1	[1.03-1.19]	Affymetrix [NR]	N
894	chr13	40514537	40514538	rs7986114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11		rs7986114-T	0.530269	2E-9		0.013508062	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
894	chr13	40514537	40514538	rs7986114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs7986114-?	NR	2E-15				NR [~ 8900000] (imputed)	N
895	chr13	40647205	40647206	rs9549046	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q14.11	LINC00332	rs9549046-A	0.117596	8E-13		0.029115	[0.021-0.037] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
895	chr13	40662000	40662001	rs2324499	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	13q14.11	LINC00332	rs2324499-G	0.67	8E-9		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
895	chr13	40662741	40662742	rs7998537	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	13q14.11	NR	rs7998537-A	0.32	4E-8		0.02242137	[0.014-0.03] unit decrease	NR [1977400] (imputed)	N
895	chr13	40695991	40695992	rs915286	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs915286-A	0.55	3E-9	(EA)	1.0604076		Affymetrix, Illumina [~ 9000000] (imputed)	N
895	chr13	40695991	40695992	rs915286	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs915286-A	0.55	3E-8	(EA)	1.068916	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
895	chr13	40707120	40707121	rs7998327	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.11	FOXO1	rs7998327-?	NR	9E-6	(PC 36:1)	0.22871344	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr13	40723943	40723944	rs117245733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	13q14.11		rs117245733-A	NR	6E-24		0.3827	[0.31-0.46] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
895	chr13	40723943	40723944	rs117245733	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11	FOXO1	rs117245733-A	0.02	6E-14		1.31	[1.21-1.39]	Affymetrix, Illumina [8662096] (imputed)	N
895	chr13	40723943	40723944	rs117245733	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11		rs117245733-A	0.0171	6E-14		0.2614	[0.19-0.33] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
895	chr13	40723943	40723944	rs117245733	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	13q14.11	LINC00332	rs117245733-A	0.02319	5E-10		1.3	[1.2-1.41]	Affymetrix, Illumina [43421991] (imputed)	N
895	chr13	40727183	40727184	rs7983475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q14.11	NR	rs7983475-T	NR	3E-26		0.0346	[0.028-0.041] unit increase	Affymetrix [9000000] (imputed)	N
895	chr13	40736288	40736289	rs6563799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	13q14.11		rs6563799-C	0.677537143	3E-9		0.08633292	[0.058-0.115] unit decrease	Illumina [13401454] (imputed)	N
895	chr13	40741906	40741907	rs9315762	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	13q14.11	FLJ42392	rs9315762-?	0.1535	7E-6	(anti-B2 GPI)	2.255	[NR]	Affymetrix [906600]	N
895	chr13	40745812	40745813	rs12427782	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	13q14.11	NR	rs12427782-G	0.509	6E-9		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
895	chr13	40745859	40745860	rs12429765	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	13q14.11	NR	rs12429765-A	NR	2E-6		0.007754	[0.0046-0.0109] unit increase	NR [11010159] (imputed)	N
895	chr13	40745859	40745860	rs12429765	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	13q14.11	NR	rs12429765-A	NR	6E-11		0.00679952	[0.0047-0.0089] unit increase	NR [11010159] (imputed)	N
895	chr13	40745859	40745860	rs12429765	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	13q14.11	NR	rs12429765-A	NR	1E-11	(adjusted for BMI)	0.00698	[0.005-0.009] unit increase	NR [11010159] (imputed)	N
895	chr13	40759772	40759773	rs10507483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q14.11		rs10507483-C	NR	1E-9		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
896	chr13	40783322	40783323	rs9603697	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q14.11	AL133318.1	rs9603697-C	0.673168	5E-18		0.0129577	[0.01-0.016] unit decrease	Affymetrix [12370749]	N
896	chr13	40783322	40783323	rs9603697	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q14.11	NA	rs9603697-T	0.3184	2E-13		0.0134	[0.0099-0.0169] unit increase	NR [~ 27400000] (imputed)	N
896	chr13	40783322	40783323	rs9603697	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q14.11	NA	rs9603697-T	0.3184	2E-13		0.0134	[0.0099-0.0169] unit increase	NR [~ 27400000] (imputed)	N
896	chr13	40784813	40784814	rs1336486	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.11	NR	rs1336486-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
896	chr13	40784813	40784814	rs1336486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.11		rs1336486-?	NR	8E-13				NR [~ 8900000] (imputed)	N
896	chr13	40787035	40787036	rs61954177	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q14.11	AL133318.1	rs61954177-G	0.672805	3E-9		0.00872725	[0.0059-0.0116] unit decrease	Affymetrix [12370749]	N
896	chr13	40788365	40788366	rs111834582	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q14.11	NR	rs111834582-?	NR	3E-6	(Latino)	1.2451	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
896	chr13	40794581	40794582	rs61954180	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	13q14.11	LINC00548	rs61954180-C	0.08	2E-6		1.21	[1.12-1.31]	Affymetrix, Illumina [7891602] (imputed)	N
896	chr13	40806354	40806355	rs13378244	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	13q14.11	LINC00548	rs13378244-A	0.4193	2E-6		0.0071	[0.0042-0.01] unit increase	Affymetrix [~ 7740000] (imputed)	N
896	chr13	40807482	40807483	rs10492681	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	13q14.11	intergenic	rs10492681-?	NR	2E-6	(ALT)			Affymetrix [70897]	N
896	chr13	40818652	40818653	rs12870045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q14.11	NR	rs12870045-C	NR	4E-18		0.0239	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
896	chr13	40821374	40821375	rs187657963	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	13q14.11	NR	rs187657963-?	NR	1E-6		6.0618	[1.75-10.37] unit increase	Illumina [at least 560000] (imputed)	N
896	chr13	40825381	40825382	rs932831	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	13q14.11	NR	rs932831-?	NR	7E-6		1.346	[1.1830-1.5310]	Affymetrix [237955] (imputed)	N
896	chr13	40833011	40833012	rs17061048	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs17061048-A	0.95	5E-9	(EA)	1.1451334		Affymetrix, Illumina [~ 9000000] (imputed)	N
896	chr13	40833011	40833012	rs17061048	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs17061048-A	0.95	1E-7	(EA)	1.1618136	[1.11-1.22]	Affymetrix, Illumina [~ 9000000] (imputed)	N
896	chr13	40843804	40843805	rs6563812	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11		rs6563812-C	0.4791	8E-9		0.0478	[0.032-0.064] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
896	chr13	40853345	40853346	rs7331658	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q14.11	NR	rs7331658-?		4E-6				Illumina [4322238] (imputed)	N
896	chr13	40867547	40867548	rs9549153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	13q14.11	LOC646982	rs9549153-G	0.26	3E-8	(Lys)	0.22	[0.14-0.3] unit increase	Illumina [1288202] (imputed)	N
897	chr13	40899300	40899301	rs7984392	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	13q14.11	NR	rs7984392-?		7E-6		2.53	[1.69-3.79]	Illumina [539473] (imputed)	N
897	chr13	40930156	40930157	rs79039062	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	13q14.11	NR	rs79039062-?	NR	8E-6		0.3478	[0.19-0.51] unit decrease	Illumina [at least 560000] (imputed)	N
897	chr13	40948150	40948151	rs913246	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q14.11	NR	rs913246-?	NR	7E-6		1.9374	[NR]	Affymetrix [722112]	N
897	chr13	40969437	40969438	rs1751857	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	13q14.11	LINC00598	rs1751857-?		4E-7		0.11	[0.069-0.151] unit increase	Affymetrix [418365]	N
897	chr13	40974022	40974023	rs77526211	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	13q14.11		rs77526211-?	NR	5E-8				Affymetrix [NR] (imputed)	N
897	chr13	40974022	40974023	rs77526211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q14.11		rs77526211-A	0.031193	9E-43		0.08931869	[0.077-0.102] unit increase	Affymetrix [93095623] (imputed)	N
897	chr13	40974022	40974023	rs77526211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q14.11		rs77526211-A	0.0312	5E-33		0.07771155	[0.065-0.09] unit increase	Affymetrix [93095623] (imputed)	N
897	chr13	40974022	40974023	rs77526211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q14.11	intergenic	rs77526211-A	0.0319	5E-10		0.06537176	[0.045-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
897	chr13	40974022	40974023	rs77526211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q14.11	intergenic	rs77526211-A	0.0319	1E-9		0.06440723	[0.044-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
897	chr13	40975936	40975937	rs6563831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	13q14.11	intergenic	rs6563831-T	0.6454	9E-10		0.02304384	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
897	chr13	40977803	40977804	rs11839354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q14.11	RN7SKP2	rs11839354-A	0.245565	3E-10		0.01625628	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr13	40997894	40997895	rs2039004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q14.11		rs2039004-?	NR	3E-11				NR [~ 8900000] (imputed)	N
897	chr13	41002640	41002641	rs1892548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	13q14.11		rs1892548-C	0.773057	2E-9		0.0317599	[0.021-0.042] unit decrease	Illumina [13471440] (imputed)	N
897	chr13	41002640	41002641	rs1892548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q14.11		rs1892548-C	NR	6E-114		0.0505	[0.046-0.055] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
897	chr13	41002640	41002641	rs1892548	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q14.11		rs1892548-T	0.343	8E-60				Affymetrix [10369434] (imputed)	N
897	chr13	41002640	41002641	rs1892548	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q14.11		rs1892548-T	0.343	8E-52				Affymetrix [10369434] (imputed)	N
897	chr13	41002640	41002641	rs1892548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q14.11		rs1892548-C	0.656667	6E-161		0.06356684	[0.059-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr13	41002640	41002641	rs1892548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q14.11		rs1892548-T	0.343294	5E-165		0.064155705	[0.06-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr13	41002640	41002641	rs1892548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs1892548-C	0.664804	5E-234				Affymetrix, Illumina [23467995] (imputed)	N
897	chr13	41002640	41002641	rs1892548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q14.11	NR	rs1892548-C	0.654819	5E-219		0.062797	[0.059-0.067] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
897	chr13	41002640	41002641	rs1892548	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	13q14.11	LINC00598	rs1892548-?	NR	2E-8		0.03867	[0.025-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
897	chr13	41002640	41002641	rs1892548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q14.11	intergenic	rs1892548-C	0.6578	3E-64		0.06431439	[0.057-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
897	chr13	41002640	41002641	rs1892548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q14.11	intergenic	rs1892548-C	0.6578	7E-63		0.06378615	[0.056-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
897	chr13	41002640	41002641	rs1892548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q14.11	intergenic	rs1892548-C	0.6578	3E-54		0.05909186	[0.052-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
897	chr13	41013976	41013977	rs941823	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	13q14.11	Intergenic	rs941823-?		4E-7				Illumina [9578670] (imputed)	N
897	chr13	41013976	41013977	rs941823	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	13q14.11	Intergenic	rs941823-?		4E-7				Illumina [9725440] (imputed)	N
897	chr13	41013976	41013977	rs941823	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	13q14.11	intergenic	rs941823-?	NR	7E-11	(subset analysis)			Illumina [130052]	N
897	chr13	41013976	41013977	rs941823	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs941823-G	0.75	1E-13	(EA)	1.1147928		Affymetrix, Illumina [~ 9000000] (imputed)	N
897	chr13	41013976	41013977	rs941823	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs941823-G	0.75	6E-13	(EA)	1.0865605		Affymetrix, Illumina [~ 9000000] (imputed)	N
897	chr13	41013976	41013977	rs941823	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q14.11	intergenic	rs941823-C	0.758	2E-14		1.071	[1.036-1.107]	Affymetrix, Illumina [1230000] (imputed)	N
897	chr13	41013976	41013977	rs941823	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	13q14.11	intergenic	rs941823-C	0.76	4E-12		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 1100000] (imputed)	N
898	chr13	41108894	41108895	rs180828263	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	13q14.11		rs180828263-T	0.01	4E-9				NR [NR] (imputed)	N
898	chr13	41108894	41108895	rs180828263	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	13q14.11		rs180828263-T	0.01	4E-6		1.5	[0.85-2.15] unit decrease	NR [NR] (imputed)	N
898	chr13	41109428	41109429	rs2755237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs2755237-?	NR	9E-23				NR [~ 8900000] (imputed)	N
898	chr13	41109428	41109429	rs2755237	20719862	Vitart V	2010-08-18	Hum Mol Genet	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	13q14.11	FOXO1	rs2755237-A	NR	1E-8		0.17	[0.11-0.23] unit increase	Illumina [~ 2000000] (imputed)	N
898	chr13	41110269	41110270	rs2755238	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	13q14.11	FOXO1	rs2755238-T	0.902	7E-75		0.205	[0.18-0.23] unit increase	Affymetrix [12000000] (imputed)	N
898	chr13	41110883	41110884	rs2721051	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	13q14.11	MRPS31, MTRF1, NAA16, SLC25A15, ELF1,  FOXO1,  WBP4	rs2721051-T	NR	6E-35		0.452	[0.38-0.52] unit increase	Affymetrix [7701190] (imputed)	N
898	chr13	41110883	41110884	rs2721051	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	13q14.11	FOXO1	rs2721051-T	0.104	4E-20		5.836	[4.59-7.08] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
898	chr13	41110883	41110884	rs2721051	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	13q14.11	FOXO1	rs2721051-T	0.108	5E-11		0.27	[0.19-0.35] mm Hg decrease	Affymetrix [NR] (imputed)	N
898	chr13	41110883	41110884	rs2721051	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal hysteresis	6,645 individuals	2,384 European ancestry individuals	13q14.11	FOXO1	rs2721051-T	0.108	5E-11		0.25	[0.17-0.32] mm Hg decrease	Affymetrix [NR] (imputed)	N
898	chr13	41110883	41110884	rs2721051	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	13q14.11	FOXO1	rs2721051-?	NR	1E-9		0.21	unit decrease	Illumina [NR]	N
898	chr13	41110883	41110884	rs2721051	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	13q14.11	FOXO1	rs2721051-?	NR	7E-7		0.17	unit decrease	Illumina [NR]	N
898	chr13	41110883	41110884	rs2721051	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q14.11	LINC00598, FOXO1	rs2721051-C	0.9013	2E-16		0.1917	[0.15-0.24] unit increase	Affymetrix [~ 11900000] (imputed)	N
898	chr13	41110883	41110884	rs2721051	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	13q14.11	FOXO1	rs2721051-T	0.11	4E-14		0.17	[0.13-0.21] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
898	chr13	41110883	41110884	rs2721051	20485516	Lu Y	2010-05-13	PLoS Genet	Common genetic variants near the Brittle Cornea Syndrome locus ZNF469 influence the blinding disease risk factor central corneal thickness.	Central corneal thickness	3,473 European ancestry twins in 1,905 families, 301 European ancestry thin CCT cases, 301 European ancestry thick CCT controls	NA	13q14.11	FOXO1	rs2721051-G	NR	5E-10		0.24	[0.16-0.32] unit decrease	Illumina [~ 2400000]	N
898	chr13	41119465	41119466	rs11616662	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	13q14.11		rs11616662-G	0.901122	5E-60		0.240534	[0.21-0.27] increase	Affymetrix [11014269] (imputed)	N
898	chr13	41119465	41119466	rs11616662	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	13q14.11	FOXO1	rs11616662-G	0.902	4E-84		0.232	[0.21-0.26] unit increase	Affymetrix [12000000] (imputed)	N
898	chr13	41119465	41119466	rs11616662	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q14.11	LINC00598, FOXO1	rs11616662-G	0.9011	5E-17		0.1962	[0.15-0.24] unit increase	Affymetrix [~ 11900000] (imputed)	N
898	chr13	41119465	41119466	rs11616662	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	13q14.11	FOXO1	rs11616662-?	NR	8E-18		0.19	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
898	chr13	41132545	41132546	rs3841231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q14.11	FOXO1	rs3841231-CT	0.734	6E-6		0.035	[0.02-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
898	chr13	41153584	41153585	rs9532562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q14.11	FOXO1	rs9532562-G	0.216863	2E-26		0.029418586	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
898	chr13	41153584	41153585	rs9532562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q14.11	FOXO1	rs9532562-G	0.216767	7E-25		0.0312824	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr13	41160269	41160270	rs9532563	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	13q14.11		rs9532563-T	0.782	5E-22		0.13	[0.1-0.16] % increase	Affymetrix [NR] (imputed)	N
899	chr13	41160269	41160270	rs9532563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q14.11	FOXO1	rs9532563-C	0.21682	4E-18		0.023734156	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr13	41160269	41160270	rs9532563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q14.11	NR	rs9532563-C	0.216343	6E-42		0.02991	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
899	chr13	41160269	41160270	rs9532563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q14.11	NR	rs9532563-C	0.217151	5E-29		0.026091	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
899	chr13	41160269	41160270	rs9532563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q14.11		rs9532563-?	NR	2E-31				NR [~ 8900000] (imputed)	N
899	chr13	41160269	41160270	rs9532563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q14.11	FOXO1	rs9532563-C	0.2175	7E-12		0.02931834	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41160578	41160579	rs9532564	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	13q14.11		rs9532564-C	0.79462	5E-9		0.0615037	[0.039-0.084] decrease	Affymetrix [11014269] (imputed)	N
899	chr13	41160578	41160579	rs9532564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q14.11	FOXO1	rs9532564-G	0.206424	6E-20		0.025922857	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr13	41170139	41170140	rs2701863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs2701863-T	0.550828	4E-12				Affymetrix, Illumina [19905671] (imputed)	N
899	chr13	41170139	41170140	rs2701863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	13q14.11	NR	rs2701863-T	0.305823	2E-13		0.052069	[0.038-0.066] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
899	chr13	41173407	41173408	rs4943794	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	13q14.11	FOXO1	rs4943794-C	0.23	7E-12		1.043	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
899	chr13	41178823	41178824	rs1986649	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q14.11		rs1986649-C	0.787	1E-19				Affymetrix [10369434] (imputed)	N
899	chr13	41178823	41178824	rs1986649	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q14.11		rs1986649-C	0.787	9E-12				Affymetrix [10369434] (imputed)	N
899	chr13	41179320	41179321	rs9549238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs9549238-A	0.183556	4E-42				Affymetrix, Illumina [24246363] (imputed)	N
899	chr13	41179320	41179321	rs9549238	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	13q14.11	NR	rs9549238-A	0.2128	1E-11		1.046	[1.033-1.059]	Affymetrix [15688218] (imputed)	N
899	chr13	41179579	41179580	rs7985364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs7985364-G	0.373264	5E-59				Affymetrix, Illumina [19872809] (imputed)	N
899	chr13	41179797	41179798	rs7986407	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	13q14.11		rs7986407-A	0.6908	2E-13		0.064	[0.047-0.081] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
899	chr13	41179797	41179798	rs7986407	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	13q14.11	FOXO1	rs7986407-G	0.305	7E-8		1.07	[1.04-1.10]	Affymetrix, Illumina [43421991] (imputed)	N
899	chr13	41184357	41184358	rs17061453	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs17061453-?	NR	4E-15		0.0426284	[0.032-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
899	chr13	41185308	41185309	rs7331212	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	13q14.11	FOXO1	rs7331212-G	0.737	2E-11		0.03	[0.02-0.04] unit increase	Affymetrix [~ 10446505] (imputed)	N
899	chr13	41185308	41185309	rs7331212	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	13q14.11	FOXO1	rs7331212-?	NR	9E-9		0.024	[0.016-0.032] SD units decrease	Affymetrix [13995214] (imputed)	N
899	chr13	41188291	41188292	rs3900833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q14.11	FOXO1	rs3900833-G	0.307745	1E-15		0.020105602	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41188291	41188292	rs3900833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q14.11	FOXO1	rs3900833-G	0.307742	7E-13		0.018042846	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41195653	41195654	rs76983463	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	FOXO1	rs76983463-T	0.95931	2E-19		0.0423875	[0.033-0.052] unit decrease	NR [13737936] (imputed)	N
899	chr13	41195653	41195654	rs76983463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs76983463-?	NR	7E-16				NR [~ 8900000] (imputed)	N
899	chr13	41198075	41198075	rs11459608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q14.11	FOXO1	rs11459608-AT	0.310801	5E-10		0.015127829	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41203364	41203365	rs113377887	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	13q14.11	NR	rs113377887-T	0.2107	2E-12		1.052	[1.038-1.067]	Affymetrix [15688218] (imputed)	N
899	chr13	41216533	41216534	rs4325427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q14.11	FOXO1	rs4325427-T	0.287155	3E-43		0.033687208	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr13	41216533	41216534	rs4325427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q14.11	FOXO1	rs4325427-T	0.287141	2E-32		0.028901674	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr13	41216533	41216534	rs4325427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q14.11	FOXO1	rs4325427-T	0.2868	1E-16		0.03253815	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41216533	41216534	rs4325427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q14.11	FOXO1	rs4325427-T	0.2868	4E-15		0.03100491	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41216533	41216534	rs4325427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q14.11	FOXO1	rs4325427-T	0.2868	3E-20		0.03641795	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41217204	41217205	rs9549243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q14.11		rs9549243-?	NR	1E-13				NR [~ 8900000] (imputed)	N
899	chr13	41224287	41224291	rs71718386	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	13q14.11	FOXO1	rs71718386-C	0.3076	1E-13		0.02871437	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41225666	41225669	rs66942171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11	FOXO1	rs66942171-A	0.307206	6E-41		0.033005185	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41244259	41244260	rs9532580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q14.11	NR	rs9532580-C	0.263631	2E-10		0.013957	[0.0097-0.0182] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
899	chr13	41244259	41244260	rs9532580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q14.11		rs9532580-?	NR	8E-10				NR [~ 8900000] (imputed)	N
899	chr13	41244259	41244260	rs9532580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q14.11	FOXO1	rs9532580-C	0.2615	7E-9		0.02357476	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41244296	41244297	rs6563842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q14.11	NR	rs6563842-T	0.306226	3E-61		0.035704	[0.031-0.04] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
899	chr13	41244296	41244297	rs6563842	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	13q14.11	FOXO1	rs6563842-T	0.3022	3E-13		0.0286538	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41244296	41244297	rs6563842	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	13q14.11	FOXO1	rs6563842-T	0.3022	2E-15		0.0310048	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41244296	41244297	rs6563842	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	13q14.11	FOXO1	rs6563842-T	0.3022	2E-10		0.02494378	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41246757	41246758	rs17061503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q14.11	NR	rs17061503-A	0.307554	9E-12		0.01662681	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41246757	41246758	rs17061503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs17061503-?	NR	2E-52				NR [~ 8900000] (imputed)	N
899	chr13	41248025	41248026	rs9549258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q14.11		rs9549258-C	NR	8E-23		0.0235	[0.019-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
899	chr13	41252264	41252265	rs2065633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q14.11		rs2065633-C	NR	1E-45		0.0276	[0.024-0.031] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
899	chr13	41252264	41252265	rs2065633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11		rs2065633-C	0.29025	6E-42		0.033996202	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41254103	41254104	rs9549260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q14.11		rs9549260-A	0.215748	3E-26		0.028503282	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
899	chr13	41254103	41254104	rs9549260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs9549260-A	0.265501	3E-33				Affymetrix, Illumina [24332387] (imputed)	N
899	chr13	41254103	41254104	rs9549260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q14.11	NR	rs9549260-A	0.215391	4E-36		0.028439	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
899	chr13	41254103	41254104	rs9549260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q14.11	NR	rs9549260-A	0.215164	7E-11		0.014695	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
899	chr13	41254103	41254104	rs9549260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q14.11	NR	rs9549260-A	0.215196	2E-11		0.015152	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
899	chr13	41254103	41254104	rs9549260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q14.11		rs9549260-?	NR	4E-26				NR [~ 8900000] (imputed)	N
899	chr13	41254103	41254104	rs9549260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	13q14.11	intergenic	rs9549260-A	0.2153	2E-9		0.02604552	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
899	chr13	41256472	41256473	rs9532583	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q14.11		rs9532583-G	NR	3E-13		0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
899	chr13	41259911	41259912	rs60333767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	13q14.11		rs60333767-T	0.223063	2E-21		0.0364369	[0.029-0.044] unit decrease	Illumina [13479135] (imputed)	N
899	chr13	41259911	41259912	rs60333767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q14.11		rs60333767-T	NR	2E-29		0.0495	[0.041-0.058] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
899	chr13	41259911	41259912	rs60333767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	13q14.11	NR	rs60333767-C	0.78569	4E-18		0.040106	[0.031-0.049] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
899	chr13	41265388	41265389	rs145741624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	13q14.11		rs145741624-T	0.226341	1E-29		0.0493603	[0.041-0.058] unit increase	Illumina [13476266] (imputed)	N
899	chr13	41265981	41265982	rs111437842	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	13q14.11	FOXO1, MIR320D1	rs111437842-?	NR	1E-14		0.04176	[0.031-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
899	chr13	41268327	41268328	rs115535790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	13q14.11		rs115535790-A	0.226077	1E-29		0.049816	[0.041-0.058] unit increase	Illumina [13476299] (imputed)	N
899	chr13	41269655	41269656	rs148041301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	13q14.11	FOXO1, MIR320D1	rs148041301-?	NR	2E-25		0.05715	[0.046-0.068] unit increase novel	Illumina [6108953] (imputed)	N
899	chr13	41269655	41269656	rs148041301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	13q14.11	FOXO1, MIR320D1	rs148041301-?	NR	7E-23		0.05384	[0.043-0.065] unit increase novel	Illumina [6108953] (imputed)	N
899	chr13	41272019	41272020	rs9577111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q14.11		rs9577111-A	NR	8E-18		0.0121	[0.0094-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
899	chr13	41277070	41277071	rs116541893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q14.11		rs116541893-C	NR	1E-29		0.0499	[0.041-0.059] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
899	chr13	41281730	41281731	rs7996228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs7996228-?	NR	8E-22				NR [~ 8900000] (imputed)	N
900	chr13	41288310	41288311	rs114224075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	13q14.11	NR	rs114224075-C	0.780009	2E-29		0.056816	[0.047-0.067] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
900	chr13	41310282	41310283	rs201528345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	13q14.11	NR	rs201528345-G	0.777342	2E-28		0.05538	[0.046-0.065] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
900	chr13	41331496	41331497	rs8002412	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	13q14.11	MRPS31	rs8002412-C	0.1803	3E-8		1.2	1.13-1.29	Affymetrix [6845584] (imputed)	N
900	chr13	41347516	41347517	rs9315786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	13q14.11	MRPS31	rs9315786-G	0.3028	5E-11		0.02571222	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
900	chr13	41364888	41364889	rs118068821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	13q14.11	NR	rs118068821-A	0.787788	6E-11		0.039663	[0.028-0.052] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
900	chr13	41384155	41384156	rs9549293	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9549293-A	0.593951	1E-10		0.054847	[0.037-0.073] increase	Affymetrix [11014269] (imputed)	N
900	chr13	41390780	41390781	rs61123801	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	13q14.11	TPTE2P5	rs61123801-?	NR	1E-8		0.04085	[0.027-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
900	chr13	41397481	41397482	rs9549297	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	13q14.11	MRPS31	rs9549297-A	0.8203	9E-11		0.1483	[0.1-0.19] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
900	chr13	41416220	41416221	rs7992208	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	896 European ancestry major depressive disorder cases, 934 European ancestry individuals	NA	13q14.11	NR	rs7992208-?		3E-6		2443.0	[NR] unit decrease	Illumina [4278941] (imputed)	N
901	chr13	41493934	41493934	rs34213683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q14.11	TPTE2P5, SUGT1P3	rs34213683-AAAT	0.6689	9E-10		0.02405798	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr13	41497211	41497211	rs200260400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11	SUGT1P3, TPTE2P5	rs200260400-TA	0.184901	1E-10		0.018883133	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr13	41501549	41501550	rs9532669	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	13q14.11	SUGT1P3, ELF1	rs9532669-A	NR	2E-7		1.216	[NR]	Illumina [10863230] (imputed)	N
901	chr13	41522337	41522338	rs9532679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q14.11		rs9532679-C	NR	7E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
901	chr13	41522337	41522338	rs9532679	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	13q14.11		rs9532679-A	0.85	2E-13				Affymetrix [10369434] (imputed)	N
901	chr13	41522337	41522338	rs9532679	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	13q14.11		rs9532679-A	0.85	2E-12				Affymetrix [10369434] (imputed)	N
901	chr13	41522337	41522338	rs9532679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs9532679-C	0.128528	2E-29				Affymetrix, Illumina [23472807] (imputed)	N
901	chr13	41522337	41522338	rs9532679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.11	NR	rs9532679-C	0.148984	6E-33		0.032336	[0.027-0.038] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
901	chr13	41522337	41522338	rs9532679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	13q14.11	ELF1	rs9532679-C	0.1509	7E-12		0.0348511	[0.025-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
901	chr13	41522337	41522338	rs9532679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	13q14.11	ELF1	rs9532679-C	0.1509	8E-13		0.03631568	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
901	chr13	41533888	41533888	rs140967474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	13q14.11		rs140967474-GTATAAAC	0.174627	4E-10		0.0373784	[0.026-0.049] unit decrease	Illumina [13469940] (imputed)	N
901	chr13	41533980	41533981	rs9594466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q14.11		rs9594466-C	NR	2E-24		0.0249	[0.02-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
901	chr13	41535408	41535409	rs61963226	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	13q14.11	ELF1	rs61963226-?	NR	9E-9		0.0503	NR L increase	Affymetrix [9390170] (imputed)	N
901	chr13	41536531	41536532	rs7329302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs7329302-G	0.406556	1E-32				Affymetrix, Illumina [24588908] (imputed)	N
902	chr13	41553152	41553156	rs3071044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	13q14.11		rs3071044-A	0.17456	1E-10		0.0281372	[0.02-0.037] unit decrease	Illumina [13478928] (imputed)	N
902	chr13	41557090	41557091	rs149282647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.11		rs149282647-C	NR	2E-20		0.032	[0.025-0.039] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
902	chr13	41557090	41557091	rs149282647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q14.11	ELF1	rs149282647-C	0.142958	2E-22		0.031475715	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
902	chr13	41557090	41557091	rs149282647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q14.11	ELF1	rs149282647-C	0.142965	3E-28		0.035603557	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr13	41557090	41557091	rs149282647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.11	ELF1	rs149282647-C	0.142966	6E-27		0.03466881	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr13	41557090	41557091	rs149282647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	13q14.11	ELF1	rs149282647-C	0.1456	2E-13		0.03832094	[0.028-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
902	chr13	41558109	41558110	rs7329174	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	13q14.11	NR	rs7329174-G	NR	3E-6				Illumina [NR] (imputed)	N
902	chr13	41558109	41558110	rs7329174	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	13q14.11	ELF1	rs7329174-?	0.211	3E-6	(Chinese)	1.27	[NR]	NR [6344733] (imputed)	N
902	chr13	41558109	41558110	rs7329174	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	13q14.11	ELF1	rs7329174-G	0.21	6E-6		1.45		Illumina [2100739] (imputed)	N
902	chr13	41558109	41558110	rs7329174	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	13q14.11	WBP4, ELF1, microRNA2276, SLC25A15	rs7329174-G	NR	8E-9		1.27	[1.17-1.38]	Illumina [4929034] (imputed)	N
902	chr13	41558109	41558110	rs7329174	21044949	Yang J	2010-11-02	Hum Mol Genet	ELF1 is associated with systemic lupus erythematosus in Asian populations.	Systemic lupus erythematosus	612 Chinese ancestry cases, 1,160 Chinese ancestry controls	2,090 Chinese ancestry cases, 1,981 Chinese ancestry controls, 462 Thai ancestry cases, 951 Thai ancestry controls	13q14.11	ELF1	rs7329174-G	0.22	1E-8		1.26	[1.16-1.36]	Illumina [513108]	N
902	chr13	41575390	41575391	rs57141708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q14.11		rs57141708-A	0.256031	1E-11		0.0158068	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
902	chr13	41575390	41575391	rs57141708	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	13q14.11	ELF1	rs57141708-A	0.224	7E-22		1.183	[1.15-1.22]	Illumina [11270530] (imputed)	N
902	chr13	41575390	41575391	rs57141708	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q14.11	ELF1	rs57141708-?	NR	1E-14		0.02526605	[0.019-0.032] unit decrease	Illumina [27896057] (imputed)	N
902	chr13	41579808	41579809	rs73176930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q14.11	ELF1	rs73176930-C	0.201828	4E-12		0.019837795	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
902	chr13	41579808	41579809	rs73176930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11	ELF1	rs73176930-C	0.201629	1E-10		0.018277226	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr13	41581665	41581666	rs7323613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q14.11	ELF1	rs7323613-A	0.201703	1E-10		0.018411903	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
902	chr13	41581665	41581666	rs7323613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs7323613-A	0.203468	1E-30				Affymetrix, Illumina [20825802] (imputed)	N
902	chr13	41581929	41581930	rs9566656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q14.11	ELF1	rs9566656-T	0.201669	1E-14		0.0266955	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
902	chr13	41581929	41581930	rs9566656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q14.11	ELF1	rs9566656-T	0.201664	3E-15		0.022163063	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
902	chr13	41584689	41584690	rs9590569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q14.11	ELF1	rs9590569-C	0.282444	4E-19		0.023172887	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr13	41584689	41584690	rs9590569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q14.11	ELF1	rs9590569-C	0.282444	2E-15		0.020538239	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
902	chr13	41584689	41584690	rs9590569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q14.11	NR	rs9590569-C	0.27986	9E-34		0.024835	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
902	chr13	41609046	41609047	rs17532301	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q14.11	ELF1	rs17532301-A	0.0674	3E-12		0.0304	[0.022-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
902	chr13	41611270	41611271	rs73176948	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	13q14.11	ELF1	rs73176948-?	NR	2E-15		0.0032	[0.0022-0.0042] unit decrease	Affymetrix [21347608] (imputed)	N
902	chr13	41611270	41611271	rs73176948	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	13q14.11	ELF1	rs73176948-?	NR	1E-9		0.0047	[0.0031-0.0063] unit decrease	Affymetrix [21347608] (imputed)	N
902	chr13	41635300	41635301	rs17532371	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q14.11	ELF1	rs17532371-C	0.925036	1E-24		0.00436594	[0.0035-0.0052] unit increase	Affymetrix [13995440] (imputed)	N
902	chr13	41646085	41646087	rs142154732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q14.11		rs142154732-C	NR	9E-14		0.0315	[0.023-0.04] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
902	chr13	41646085	41646087	rs142154732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q14.11		rs142154732-C	NR	5E-9		0.0248	[0.016-0.033] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
902	chr13	41646085	41646087	rs142154732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	13q14.11	NR	rs142154732-C	NR	2E-13		0.0335	[0.024-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr13	41646085	41646087	rs142154732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	13q14.11	NR	rs142154732-C	NR	1E-10		0.0292	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr13	41652040	41652040	rs148480921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q14.11		rs148480921-CA	NR	2E-12		0.0309	[0.022-0.04] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
902	chr13	41652040	41652040	rs148480921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q14.11	NR	rs148480921-CA	NR	1E-9		0.0279	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
902	chr13	41655899	41655900	rs78169557	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q14.11	WBP4	rs78169557-T	0.8904	4E-9		0.1426	[0.097-0.188] unit increase	Affymetrix [~ 11900000] (imputed)	N
902	chr13	41671084	41671085	rs11838725	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	13q14.11	WBP4	rs11838725-?		2E-6		1.89	unit decrease	Illumina [4751257] (imputed)	N
902	chr13	41678081	41678081	rs10687116	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	13q14.11	WBP4	rs10687116-?	NR	9E-10				NR [NR]	N
902	chr13	41678081	41678081	rs10687116	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	13q14.11	WBP4	rs10687116-AGATG	0.8	9E-10		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
903	chr13	41683060	41683061	rs17532490	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.11	intergenic	rs17532490-A	0.0854	7E-10		0.0211	[0.014-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
903	chr13	41688400	41688401	rs4397977	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q14.11	NR	rs4397977-G	0.6565	3E-9		0.0291	[0.019-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
903	chr13	41688400	41688401	rs4397977	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q14.11	NR	rs4397977-G	0.5764	1E-11		0.0283	[0.02-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
903	chr13	41688400	41688401	rs4397977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs4397977-?	NR	4E-9				NR [~ 8900000] (imputed)	N
903	chr13	41689066	41689067	rs117230571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q14.11		rs117230571-G	NR	6E-9		0.0252	[0.017-0.034] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
903	chr13	41689066	41689067	rs117230571	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q14.11	KBTBD6	rs117230571-A	0.923044	2E-13		0.0266942	[0.02-0.034] unit increase	Affymetrix [NR] (imputed)	N
903	chr13	41689066	41689067	rs117230571	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q14.11	KBTBD6	rs117230571-A	0.922999	1E-9		0.0228106	[0.015-0.03] unit increase	Affymetrix [NR] (imputed)	N
903	chr13	41695099	41695100	rs1332941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q14.11		rs1332941-?	NR	7E-12				NR [~ 8900000] (imputed)	N
903	chr13	41699618	41699619	rs2104724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs2104724-?	NR	9E-9				NR [~ 8900000] (imputed)	N
903	chr13	41764439	41764440	rs7982779	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q14.11	LOC101929140	rs7982779-A	0.8888	2E-8		0.1333	[0.089-0.177] unit increase	Affymetrix [~ 11900000] (imputed)	N
904	chr13	41849730	41849731	rs112684153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q14.11		rs112684153-?	NR	4E-9				NR [~ 8900000] (imputed)	N
904	chr13	41865324	41865325	rs9566740	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9566740-T	0.908581	2E-9		0.0940663	[0.063-0.125] increase	Affymetrix [11014269] (imputed)	N
904	chr13	41895265	41895266	rs74922337	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	13q14.11	intergenic	rs74922337-?	0.917	2E-7	(conditional on Round 1 SNPs)	0.055	unit increase	Affymetrix [10109774] (imputed)	N
905	chr13	41963210	41963211	rs9594531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs9594531-?	NR	3E-8				NR [~ 8900000] (imputed)	N
905	chr13	41967192	41967193	rs4274337	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	13q14.11	NAA16	rs4274337-A	0.1697	3E-13		0.2968	[0.22-0.38] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
905	chr13	41983215	41983216	rs542958253	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q14.11	OR7E36P	rs542958253-A	0.9948	9E-6		0.2434	[0.14-0.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
905	chr13	41986845	41986846	rs4304932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q14.11		rs4304932-?	NR	4E-10				NR [~ 8900000] (imputed)	N
905	chr13	41998021	41998022	rs7328235	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	13q14.11	MTRF1, OR7E36P	rs7328235-T	0.9439	7E-6		0.0607	NR unit decrease	NR [NR] (imputed)	N
905	chr13	42033697	42033698	rs10467472	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	13q14.11	RGCC	rs10467472-C	0.243	6E-16		0.22	[0.17-0.27] unit decrease	Affymetrix [339439]	N
905	chr13	42039287	42039288	rs3783196	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	13q14.11	RGCC	rs3783196-C	NR	1E-7		1.0588	NR	Affymetrix, Illumina [8278136] (imputed)	N
905	chr13	42047397	42047398	rs7328279	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q14.11	Intergenic	rs7328279-?	NR	2E-6		2.274	[NR]	Affymetrix [492217] (imputed)	N
905	chr13	42052411	42052411	rs59477460	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs59477460-?	NR	7E-14		0.0170808	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
905	chr13	42061285	42061286	rs9532858	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	RGCC	rs9532858-G	0.319267	4E-14		0.0151823	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
905	chr13	42069458	42069459	rs9532861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs9532861-?	NR	1E-15				NR [~ 8900000] (imputed)	N
906	chr13	42103421	42103422	rs9315846	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q14.11	NR	rs9315846-T	0.356726	6E-10		0.0199961	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
906	chr13	42139244	42139245	rs17594362	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	13q14.11	KIAA0564	rs17594362-A	NR	4E-6		1.11	[1.09-1.13]	Illumina [465434]	N
906	chr13	42146457	42146458	rs12427685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q14.11	VWA8	rs12427685-C	0.134156	4E-14		0.024867168	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
906	chr13	42146457	42146458	rs12427685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q14.11	VWA8	rs12427685-C	0.134168	8E-14		0.02459309	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
906	chr13	42151622	42151623	rs1023243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q14.11	VWA8	rs1023243-A	0.542955	3E-16		0.018583981	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
906	chr13	42151622	42151623	rs1023243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q14.11	VWA8	rs1023243-A	0.542956	5E-16		0.0184721	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
906	chr13	42157349	42157350	rs117299741	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		VWA8	rs117299741-?	NR	4E-8	(female)	0.438208	[NR] unit increase	Affymetrix [NR] (imputed)	N
906	chr13	42175587	42175588	rs9590614	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	13q14.11	VWA8	rs9590614-G	0.61	1E-8	(Panlobular)	0.002	[0.00082-0.00318] unit decrease	Illumina [6942916] (imputed)	N
907	chr13	42252233	42252234	rs9566819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs9566819-?	NR	2E-10				NR [~ 8900000] (imputed)	N
907	chr13	42294155	42294156	rs932879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q14.11	Intergenic	rs932879-A	0.446	4E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
907	chr13	42294155	42294156	rs932879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q14.11	Intergenic	rs932879-A	0.446	1E-8	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
907	chr13	42294396	42294397	rs10507495	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.11	NR	rs10507495-?	NR	3E-6	(AA)	13.68	[11.99-15.37]	Illumina [905956]	N
907	chr13	42308882	42308883	rs9590637	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	13q14.11		rs9590637-A	0.624045	2E-8		0.0236947	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
907	chr13	42320826	42320827	rs10507497	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	13q14.11		rs10507497-A	0.23	1E-6		3.12	[1.98-4.93]	Illumina [9175654] (imputed)	N
908	chr13	42440495	42440496	rs9532939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	13q14.11		rs9532939-T	0.65454	2E-8		0.0240122	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
908	chr13	42450439	42450440	rs139893147	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	13q14.11	NR	rs139893147-G		7E-6		0.4952	[0.27-0.72] SD units increase	NR [10700000] (imputed)	N
909	chr13	42505673	42505674	rs1900442	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	13q14.11	VWA8	rs1900442-T	0.85	5E-6		2.7027	[NR]	Affymetrix [up to 4467279] (imputed)	N
909	chr13	42512638	42512639	rs61963123	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q14.11		rs61963123-T	0.7847	2E-10		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
909	chr13	42524240	42524241	rs76207901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs76207901-?	NR	7E-12				NR [~ 8900000] (imputed)	N
909	chr13	42543515	42543516	rs9532959	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q14.11	LOC100507240	rs9532959-A	0.0835	3E-10		0.3137	[0.22-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
909	chr13	42548502	42548503	rs7323058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	13q14.11		rs7323058-T	NR	7E-24		0.0348	[0.028-0.041] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
909	chr13	42551507	42551508	rs7319447	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	13q14.11	NR	rs7319447-G	0.1513	2E-25		0.003277	[0.0027-0.0039] unit decrease	Affymetrix [NR] (imputed)	N
909	chr13	42559075	42559076	rs7336933	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	13q14.11	NR	rs7336933-A	NR	9E-10		0.022	[0.014-0.03] mg/dl decrease	Affymetrix [NR] (imputed)	N
909	chr13	42559075	42559076	rs7336933	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	13q14.11	KIAA0564, DGKH	rs7336933-A	0.15	9E-10		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
909	chr13	42573979	42573980	rs7993752	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	13q14.11	NR	rs7993752-C	0.412864	1E-10		0.0134737	[0.0094-0.0176] unit increase	NR [NR]	N
909	chr13	42579630	42579631	rs17062711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs17062711-A	0.303334	6E-14				Affymetrix, Illumina [24246363] (imputed)	N
909	chr13	42579630	42579631	rs17062711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q14.11	NR	rs17062711-A	0.322356	5E-15		0.015362	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
909	chr13	42583976	42583977	rs12184664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	13q14.11		rs12184664-G	NR	5E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
909	chr13	42591838	42591839	rs9532969	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	13q14.11	DGKH	rs9532969-C		3E-6		0.05	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
909	chr13	42593539	42593540	rs75416436	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	13q14.11	intergenic	rs75416436-G	0.96	1E-7		0.5	unit decrease	Illumina [5270624] (imputed)	N
909	chr13	42598290	42598291	rs8000933	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.11	NR	rs8000933-?	NR	4E-18				Affymetrix [NR]	N
910	chr13	42611666	42611667	rs9525562	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q14.11	NR	rs9525562-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
910	chr13	42631718	42631719	rs6561030	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	13q14.11	DGKH	rs6561030-A	0.28	7E-6		0.05	[0.03-0.07] cm decrease	Illumina [420885]	N
910	chr13	42634692	42634693	rs9532984	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	13q14.11		rs9532984-?	NR	2E-8		0.0451	[0.027-0.064] unit increase	NR [NR] (imputed)	N
910	chr13	42653436	42653437	rs1012053	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	13q14.11		rs1012053-C	0.5059	7E-7	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
910	chr13	42653436	42653437	rs1012053	17486107	Baum AE	2007-05-08	Mol Psychiatry	A genome-wide association study implicates diacylglycerol kinase eta (DGKH) and several other genes in the etiology of bipolar disorder.	Bipolar disorder	461 European ancestry cases, 563 European ancestry controls	772 European ancestry cases, 876 European ancestry controls	13q14.11	DGKH	rs1012053-A	0.84	2E-8		1.59	[1.35-1.87]	Illumina [555235]	N
910	chr13	42674866	42674867	rs9594674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs9594674-?	NR	9E-8				NR [~ 8900000] (imputed)	N
910	chr13	42688210	42688211	rs1170174	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	13q14.11	DGKH	rs1170174-A	0.18	5E-11		1.16	[1.11-1.22]	Affymetrix [~ 8400000] (imputed)	N
910	chr13	42694340	42694341	rs186066666	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	13q14.11	NR	rs186066666-G		4E-6		0.7036	[0.39-1.02] SD units increase	NR [10700000] (imputed)	N
910	chr13	42701738	42701739	rs670676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q14.11		rs670676-T	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
910	chr13	42701940	42701941	rs1170158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	13q14.11		rs1170158-T	0.49404815	4E-21		0.13564555	[0.11-0.16] unit decrease	Illumina [13429980] (imputed)	N
910	chr13	42716641	42716642	rs376960769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q14.11		rs376960769-C	NR	8E-10		0.0192	[0.013-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
910	chr13	42723196	42723197	rs9594686	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q14.11	DGKH	rs9594686-C	0.823184	6E-9		0.0107007	[0.0071-0.0143] unit increase	Affymetrix [12370749]	N
910	chr13	42726973	42726974	rs9590671	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	13q14.11	DGKH	rs9590671-C	NR	5E-6	(men)	0.1850365	[0.11-0.26] unit decrease	Illumina [5527232] (imputed)	N
911	chr13	42737267	42737268	rs9594689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	13q14.11		rs9594689-G	NR	1E-26		0.1227	[0.1-0.15] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
911	chr13	42737267	42737268	rs9594689	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.11	DGKH	rs9594689-T	0.6261	1E-12		0.0141	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
911	chr13	42737269	42737270	rs9594690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q14.11		rs9594690-G	NR	3E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
911	chr13	42738419	42738420	rs9315896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q14.11		rs9315896-G	NR	1E-11		0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
911	chr13	42738671	42738672	rs73187288	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q14.11	DGKH	rs73187288-A	0.8932	2E-10		0.2558	[0.18-0.33] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
911	chr13	42740062	42740063	rs73187291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q14.11	NR	rs73187291-T	NR	2E-9		0.0227	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
911	chr13	42746117	42746118	rs7328064	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	13q14.11		rs7328064-C	0.428619526	4E-17		1.1660676	[1.12506724-1.208562]	Illumina [8919992] (imputed)	N
911	chr13	42746117	42746118	rs7328064	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	13q14.11	DGKH	rs7328064-C	0.421	4E-22		1.1494253	[NR]	Illumina [6603247] (imputed)	N
911	chr13	42749191	42749192	rs9590675	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	13q14.11	DGKH	rs9590675-T	0.427	3E-11		0.0021	[0.0015-0.0027] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
911	chr13	42749710	42749711	rs67332916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	13q14.11		rs67332916-T	0.423184	9E-12		0.0196576	[0.014-0.025] unit decrease	Illumina [13478778] (imputed)	N
911	chr13	42749710	42749711	rs67332916	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	13q14.11	DGKH	rs67332916-?	NR	3E-11		0.02667	[0.019-0.035] unit increase novel	Illumina [6108953] (imputed)	N
911	chr13	42749710	42749711	rs67332916	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	13q14.11	DGKH	rs67332916-?	NR	1E-11		0.02647	[0.019-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
911	chr13	42751398	42751398	rs11429954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q14.11		rs11429954-CT	NR	2E-20		0.0152	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
911	chr13	42754521	42754522	rs4142110	22396660	Urabe Y	2012-03-01	PLoS Genet	A genome-wide association study of nephrolithiasis in the Japanese population identifies novel susceptible Loci at 5q35.3, 7p14.3, and 13q14.1.	Nephrolithiasis	904 Japanese ancestry cases, 7,471 Japanese ancestry controls	4,892 Japanese ancestry cases, 9,873 Japanese ancestry controls	13q14.11	DGKH	rs4142110-?	NR	5E-9		1.14	[1.09-1.19]	Illumina [556249]	N
911	chr13	42757212	42757213	rs34445998	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	13q14.11	DGKH	rs34445998-C	0.733	3E-8		0.318	[0.083-0.553] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
911	chr13	42772716	42772717	rs9533031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs9533031-?	NR	2E-18				NR [~ 8900000] (imputed)	N
911	chr13	42775438	42775439	rs12583267	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	13q14.11	DGKH	rs12583267-?	NR	9E-9		0.02042	[0.013-0.027] unit decrease novel	Illumina [6108953] (imputed)	N
911	chr13	42779409	42779410	rs1037271	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	13q14.11	DGKH	rs1037271-C	0.39	1E-24		1.15	[1.12-1.18]	Affymetrix, Illumina [~ 5000000] (imputed)	N
911	chr13	42779693	42779694	rs1170109	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	13q14.11	DGKH	rs1170109-T	0.12	4E-7		0.12	[0.081-0.159] unit increase	Illumina, Perlegen [2156702] (imputed)	N
911	chr13	42786679	42786680	rs347412	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	13q14.11	DGKH	rs347412-A	0.543	1E-6	(Baseline FEV1)	0.026	[NR] unit increase	Illumina [473680]	N
911	chr13	42787039	42787040	rs347413	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	13q14.11	DGKH	rs347413-G	0.7012	5E-12		6.9	NR z score decrease	Illumina [26237160] (imputed)	N
911	chr13	42842697	42842698	rs875008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q14.11	AKAP11	rs875008-G	0.234255	6E-20		0.024008961	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
911	chr13	42842697	42842698	rs875008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q14.11	AKAP11	rs875008-G	0.234277	2E-17		0.022338856	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
911	chr13	42843629	42843630	rs78738581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q14.11	NR	rs78738581-A	0.231321	3E-12		0.015264	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
911	chr13	42843629	42843630	rs78738581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs78738581-A	0.200116	6E-18				Affymetrix, Illumina [23114412] (imputed)	N
911	chr13	42843629	42843630	rs78738581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q14.11	NR	rs78738581-A	0.231943	1E-20		0.021293	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
911	chr13	42844490	42844491	rs150188223	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	13q14.11	AKAP11	rs150188223-T	0.01	5E-7	(Subset)	1.0	[0.61-1.39] unit decrease	Illumina [up to 38043574] (imputed)	N
911	chr13	42846553	42846554	rs77085139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs77085139-?	NR	3E-9				NR [~ 8900000] (imputed)	N
912	chr13	42910318	42910319	rs61959448	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs61959448-?	NR	2E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
912	chr13	42917860	42917861	rs80244186	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	13q14.11	AKAP11	rs80244186-?		6E-6				Illumina [9725440] (imputed)	N
912	chr13	42917860	42917861	rs80244186	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	13q14.11	AKAP11	rs80244186-C	0.111	4E-8		1.13	[1.09-1.18]	Illumina [9560910] (imputed)	N
912	chr13	42917930	42917931	rs74537115	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	13q14.11	AKAP11	rs74537115-T	0.141	5E-9		1.109		Illumina [715631] (imputed)	N
912	chr13	42917930	42917931	rs74537115	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	13q14.11	AKAP11	rs74537115-T	0.141	5E-9		1.109		Illumina [715631] (imputed)	N
912	chr13	42922413	42922414	rs61960884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs61960884-T	NR	2E-11		0.0228	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr13	42930658	42930659	rs238265	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	13q14.11	AKAP11	rs238265-G	0.695162	2E-9		0.09082453	[0.061-0.121] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
912	chr13	42931762	42931763	rs79102899	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q14.11	NR	rs79102899-?	NR	4E-7		5225.846	NR unit decrease	Illumina [2379855]	N
912	chr13	42936066	42936067	rs35517783	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs35517783-C	NR	5E-17		0.0495	[0.038-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr13	42945043	42945044	rs144354470	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC02341	rs144354470-?	NR	4E-11	(female)	0.630925	[NR] unit increase	Affymetrix [NR] (imputed)	N
912	chr13	42950319	42950320	rs9533087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs9533087-T	NR	2E-17		0.0293	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr13	42951448	42951449	rs9533090	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	13q14.11	AKAP11, LINC02341	rs9533090-?		2E-17		0.0511	[0.039-0.063] unit decrease	Illumina [31500000] (imputed)	N
912	chr13	42951448	42951449	rs9533090	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	13q14.11	NR	rs9533090-?	NR	2E-8		0.05221	[0.034-0.07] unit increase novel	Illumina [6108953] (imputed)	N
912	chr13	42951448	42951449	rs9533090	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	13q14.11	NR	rs9533090-T	0.4555	8E-12		0.0663	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
912	chr13	42951448	42951449	rs9533090	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	13q14.11	AKAP11	rs9533090-?	NR	3E-7	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
912	chr13	42951448	42951449	rs9533090	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	13q14.11	AKAP11	rs9533090-T	0.49	5E-68		0.1	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
912	chr13	42951448	42951449	rs9533090	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	13q14.11	AKAP11	rs9533090-T	0.50	5E-25		0.12	[0.10-0.14] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
912	chr13	42952144	42952145	rs9594738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	13q14.11		rs9594738-T	NR	3E-15		0.126	[0.095-0.157] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
912	chr13	42952144	42952145	rs9594738	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	13q14.11	NR	rs9594738-?	0.453489899635315	6E-12		0.07349182	[0.053-0.094] SD units increase	Illumina [11603265] (imputed)	N
912	chr13	42952144	42952145	rs9594738	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	13q14.11	AKAP11	rs9594738-T	0.48902	3E-15		0.12597504	[0.095-0.157] unit increase	Affymetrix [7288503] (imputed)	N
912	chr13	42952144	42952145	rs9594738	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	LOC105370177	rs9594738-C	0.50907	8E-170		0.0592003	[0.055-0.063] unit increase	NR [13737936] (imputed)	N
912	chr13	42952144	42952145	rs9594738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs9594738-?	NR	3E-144				NR [~ 8900000] (imputed)	N
912	chr13	42952144	42952145	rs9594738	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs9594738-?	NR	7E-145		0.0519436	[0.048-0.056] unit increase	Affymetrix [20259828] (imputed)	N
912	chr13	42952144	42952145	rs9594738	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs9594738-T	0.4715	5E-31	(European)	0.072	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
912	chr13	42952144	42952145	rs9594738	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs9594738-T	0.4592	4E-27		0.0614	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
912	chr13	42952144	42952145	rs9594738	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	13q14.11	RANKL	rs9594738-T	NR	4E-6	(lumbar spine)	0.15	[NR] unit increase	Illumina [2543887] (imputed)	N
912	chr13	42952144	42952145	rs9594738	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	13q14.11	RANKL	rs9594738-T	0.56	2E-8		0.1	[0.06-0.13] s.d. decrease	Illumina [301019]	N
912	chr13	42955366	42955367	rs1408221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.11		rs1408221-?	NR	1E-17				NR [~ 8900000] (imputed)	N
912	chr13	42956462	42956463	rs11840862	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	13q14.11	NR	rs11840862-?	0.284158408641814	1E-13		0.08753131	[0.064-0.111] SD units increase	Illumina [11603265] (imputed)	N
912	chr13	42956462	42956463	rs11840862	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs11840862-?	NR	6E-118		0.0513546	[0.047-0.056] unit increase	Affymetrix [20259828] (imputed)	N
912	chr13	42956620	42956621	rs17638544	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	13q14.11	TNFSF11	rs17638544-T	0.07	5E-6	(Cortical vBMD - conditional on rs1021188)	0.13	[0.071-0.189] unit increase	Illumina [2401124] (imputed)	N
912	chr13	42959132	42959133	rs58973023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q14.11		rs58973023-T	NR	4E-112		0.0499	[0.046-0.054] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
912	chr13	42959132	42959133	rs58973023	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	13q14.11		rs58973023-A	0.4894	5E-10		1.0570691	[1.038789736-1.075669953]	Affymetrix, Illumina [NR] (imputed)	N
912	chr13	42959132	42959133	rs58973023	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q14.11	LINC02341	rs58973023-A	0.512977	2E-152		0.00598007	[0.0055-0.0064] unit decrease	Affymetrix [13995440] (imputed)	N
912	chr13	42959132	42959133	rs58973023	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs58973023-?	NR	3E-144		0.051899	[0.048-0.056] unit increase	Affymetrix [20259828] (imputed)	N
912	chr13	42959132	42959133	rs58973023	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q14.11	LOC105370177	rs58973023-A	0.514484	4E-18	(women)	0.0387158	[0.03-0.048] unit increase	NR [17166351] (imputed)	N
912	chr13	42959132	42959133	rs58973023	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q14.11	LOC105370177	rs58973023-A	0.514188	3E-48		0.0468818	[0.04-0.054] unit increase	NR [17166351] (imputed)	N
912	chr13	42959132	42959133	rs58973023	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q14.11	LOC105370177	rs58973023-A	0.513849	2E-32	(men)	0.0594737	[0.049-0.07] unit increase	NR [17166351] (imputed)	N
912	chr13	42964202	42964203	rs17457561	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	13q14.11	AKAP11	rs17457561-A	0.239937	6E-18		0.0792	[0.061-0.097] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
912	chr13	42964202	42964203	rs17457561	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	13q14.11	AKAP11, TNFSF11	rs17457561-A	0.25	1E-11		0.095	[0.068-0.122] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
912	chr13	42964202	42964203	rs17457561	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	13q14.11	AKAP11, TNFSF11	rs17457561-A	0.25	4E-9		0.083	[0.056-0.11] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
912	chr13	42965693	42965694	rs8001611	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	13q14.11	NR	rs8001611-T	0.5404	2E-10		0.0947	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
912	chr13	42965693	42965694	rs8001611	23644456	Styrkarsdottir U	2013-05-05	Nature	Nonsense mutation in the LGR4 gene is associated with several human diseases and other traits.	Bone mineral density	4,931 European ancestry cases, 69,034 European ancestry controls	NA	13q14.11	NR	rs8001611-?	NR	2E-12		1.21	[NR]	Illumina [30600000] (imputed)	N
912	chr13	42965836	42965837	rs9533094	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	13q14.11	AKAP11, TNFSF11	rs9533094-G	0.49	2E-61		16.5	z-score increase	Affymetrix [4311822] (imputed)	N
912	chr13	42969048	42969049	rs9533095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	13q14.11		rs9533095-T	0.486695	2E-10		0.014365404	[0.01-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr13	42969048	42969049	rs9533095	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	13q14.11	intergenic	rs9533095-G	0.435	8E-10		0.03	[0.03-0.02] unit decrease	Illumina [NR] (imputed)	N
912	chr13	42969048	42969049	rs9533095	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	13q14.11	NR	rs9533095-T	0.4647	1E-17		0.091	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
912	chr13	42969048	42969049	rs9533095	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	13q14.11	TNFSF11	rs9533095-?	NR	2E-15	(spine)			Affymetrix, Illumina [5842825] (imputed)	N
912	chr13	42969781	42969782	rs10507508	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		13q14.11	NR	rs10507508-G	0.044	4E-6		1.66	[1.34-2.06]	Illumina [~ 8000000] (imputed)	N
912	chr13	42971614	42971615	rs77855024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs77855024-A	NR	3E-16		0.0351	[0.027-0.044] unit increase	Affymetrix [9000000] (imputed)	N
912	chr13	42974817	42974818	rs9533096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11		rs9533096-G	0.781122	4E-9		0.016662285	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
912	chr13	42974817	42974818	rs9533096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11		rs9533096-G	0.781157	9E-10		0.017379394	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
912	chr13	42977808	42977809	rs12874142	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs12874142-T	NR	3E-19		0.0261	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr13	42982301	42982302	rs2147161	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	13q14.11	NR	rs2147161-C	0.701	1E-14		0.091	[0.067-0.115] SD units decrease	Illumina [11603265] (imputed)	N
912	chr13	42988545	42988546	rs7328203	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	13q14.11	TNFSF11, AKAP11	rs7328203-G	0.4606	1E-10		1.03	[1.02-1.04]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
912	chr13	42989659	42989660	rs9594746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.11	NR	rs9594746-C	0.531828	1E-27		0.02067	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
912	chr13	42991455	42991456	rs67190063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.11		rs67190063-C	NR	2E-19		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
913	chr13	42996547	42996548	rs9533100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.11		rs9533100-T	0.53575	7E-21		0.020791976	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr13	42996547	42996548	rs9533100	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	13q14.11	AKAP11	rs9533100-G	0.4624	1E-13		0.0677269	[0.05-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
913	chr13	42996547	42996548	rs9533100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q14.11	NR	rs9533100-?	NR	1E-7		0.0429	[0.027-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
913	chr13	42997323	42997324	rs912425	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	13q14.11	NR	rs912425-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
913	chr13	42997323	42997324	rs912425	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	13q14.11	AKAP11, TNFSF11	rs912425-G	0.237	2E-7		1.045	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
913	chr13	43007193	43007194	rs2324873	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	LOC105370177	rs2324873-C	0.245877	3E-28		0.0272857	[0.022-0.032] unit decrease	NR [13737936] (imputed)	N
913	chr13	43018029	43018030	rs9525625	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	AKAP1, TFSF11	rs9525625-A	0.4706	7E-6	(EA)	1.0460321	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
913	chr13	43018029	43018030	rs9525625	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	AKAP1, TFSF11	rs9525625-A	0.4706	1E-9	(EA)	1.0763987	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
913	chr13	43026660	43026661	rs1830790	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	13q14.11	intergenic	rs1830790-A	0.531	3E-9		0.02134268	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr13	43032026	43032027	rs12430303	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	13q14.11	TNFSF11	rs12430303-C	NR	2E-9		1.14	[1.09-1.19]	Illumina [7461261] (imputed)	N
913	chr13	43032592	43032593	rs9594759	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	13q14.11	RANKL	rs9594759-T	0.62	2E-17		0.12	[0.09-0.15] s.d. decrease	Illumina [305051]	N
913	chr13	43032592	43032593	rs9594759	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	13q14.11	RANKL	rs9594759-T	0.62	2E-21		0.17	[0.14-0.21] s.d. decrease	Illumina [301019]	N
913	chr13	43034967	43034968	rs1853573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	13q14.11		rs1853573-C	NR	2E-8		0.1146	[0.074-0.155] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
913	chr13	43034967	43034968	rs1853573	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	13q14.11	AKAP11, TNFSF11	rs1853573-G	0.465	4E-12		0.029	[0.021-0.037] unit decrease	NR [NR] (imputed)	N
913	chr13	43034967	43034968	rs1853573	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	13q14.11	AKAP11, TNFSF11	rs1853573-G	0.465	4E-12		0.029	[0.021-0.037] unit decrease	NR [7647814] (imputed)	N
913	chr13	43039672	43039673	rs4512994	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	13q14.11		rs4512994-A	0.46	3E-31		0.1139	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
913	chr13	43043594	43043595	rs12428878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs12428878-G	0.47384	2E-25				Affymetrix, Illumina [23472807] (imputed)	N
913	chr13	43044945	43044946	rs7990020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	13q14.11		rs7990020-C	NR	5E-13		0.0632	[0.046-0.08] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
913	chr13	43044945	43044946	rs7990020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	13q14.11		rs7990020-C	NR	1E-8		0.0577	[0.038-0.077] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
913	chr13	43046035	43046036	rs2093816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	13q14.11		rs2093816-?	NR	3E-13				NR [~ 8900000] (imputed)	N
913	chr13	43047259	43047260	rs9533118	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	13q14.11	NR	rs9533118-A	0.544	1E-14		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
913	chr13	43050453	43050454	rs79344245	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	13q14.11		rs79344245-C	NR	3E-12		0.142495	[0.1-0.18] unit increase	NR [2787054] (imputed)	N
913	chr13	43051114	43051114	rs386378951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q14.11		rs386378951-TAA	0.515938	3E-22		0.021550542	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr13	43052879	43052880	rs2062305	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	13q14.11	Intergenic	rs2062305-?		4E-7				Illumina [9560910] (imputed)	N
913	chr13	43052879	43052880	rs2062305	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	13q14.11	TNFSF11	rs2062305-G	0.346	5E-10		1.1	[1.05-1.15]	Affymetrix, Illumina [953241] (imputed)	N
913	chr13	43055001	43055002	rs9533122	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	13q14.11		rs9533122-A	NR	6E-13		0.155125	[0.11-0.2] unit decrease	NR [5054572] (imputed)	N
913	chr13	43056035	43056036	rs34132030	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	13q14.11	Intergenic	rs34132030-A	0.32	2E-7	(additive model)	1.18	[1.11-1.26]	Illumina [123003]	N
913	chr13	43057477	43057478	rs12876545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.11	NR	rs12876545-G	0.269091	4E-17				Affymetrix, Illumina [19872809] (imputed)	N
913	chr13	43058030	43058031	rs9594770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q14.11		rs9594770-G	NR	2E-10		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
913	chr13	43058030	43058031	rs9594770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.11		rs9594770-G	0.310181	5E-16		0.020593887	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
913	chr13	43058030	43058031	rs9594770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.11		rs9594770-G	0.310203	8E-10		0.015636617	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
913	chr13	43062298	43062298	rs776296821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q14.11	NR	rs776296821-D	0.689342	2E-18		0.019647	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
913	chr13	43063830	43063831	rs66749983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q14.11		rs66749983-?	NR	4E-14				NR [~ 8900000] (imputed)	N
913	chr13	43070205	43070206	rs35860234	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	13q14.11	TNFSF11	rs35860234-G	0.2707	5E-9		1.168	[1.11-1.23]	Illumina [8966411] (imputed)	N
913	chr13	43077244	43077245	rs116926994	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs116926994-A	0.9711	4E-17		0.1579	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
913	chr13	43077244	43077245	rs116926994	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs116926994-A	0.9705	1E-19	(European)	0.1823	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
913	chr13	43086906	43086907	rs3862738	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	13q14.11	NR	rs3862738-G		2E-8		1.33	[1.20-1.47]	Illumina [109812]	N
913	chr13	43099691	43099692	rs35355882	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q14.11	NR	rs35355882-?	NR	6E-6		0.0425	[0.024-0.061] unit decrease	Illumina [at least 560000] (imputed)	N
913	chr13	43116132	43116133	rs1021188	23437003	Paternoster L	2013-02-21	PLoS Genet	Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.	Bone mineral density	up to 5,878 European ancestry individuals	up to 1,052 European ancestry individuals	13q14.11	TNFSF11	rs1021188-C	0.17	4E-14	(Cortical vBMD)	0.15	[0.11-0.19] unit decrease	Illumina [2401124] (imputed)	N
913	chr13	43116132	43116133	rs1021188	21124946	Paternoster L	2010-11-18	PLoS Genet	Genome-wide association meta-analysis of cortical bone mineral density unravels allelic heterogeneity at the RANKL locus and potential pleiotropic effects on bone.	Bone mineral density	1,934 European ancestry individuals	Up to 3,835 European ancestry individuals	13q14.11	RANKL	rs1021188-C	0.18	2E-14		3.89	[1.91-5.87] mg/cm3 decrease	Illumina [2417199] (imputed)	N
913	chr13	43117200	43117201	rs17596685	24763700	Vinayagamoorthy N	2014-04-24	PLoS One	New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.	C-reactive protein levels	7,626 Korean ancestry individuals	903 Korean ancestry individuals	13q14.11	TNFSF11	rs17596685-T		4E-6		0.093	[NR] unit decrease	Affymetrix [1219546] (imputed)	N
914	chr13	43123074	43123075	rs142186557	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	TNFSF11	rs142186557-G	0.981664	3E-9		0.0398769	[0.027-0.053] unit decrease	NR [13737936] (imputed)	N
914	chr13	43128576	43128577	rs9525638	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	13q14.11	NR	rs9525638-T	0.5826	2E-10		0.0844	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
914	chr13	43128576	43128577	rs9525638	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	13q14.11	Intergenic	rs9525638-C	0.42	1E-8				Illumina [2276811] (imputed)	N
914	chr13	43128576	43128577	rs9525638	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	13q14.11	Intergenic	rs9525638-C	0.42	6E-8		0.0756	[NR] unit increase	Illumina [2276811] (imputed)	N
914	chr13	43128576	43128577	rs9525638	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	13q14.11	TNFSF11	rs9525638-C	NR	2E-8	(EA)	0.0949	[0.062-0.128] unit increase	Illumina [~ 2500000] (imputed)	N
914	chr13	43128576	43128577	rs9525638	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	13q14.11	TNFSF11	rs9525638-C	0.42	3E-9		0.089	[0.060-0.118] unit increase	Illumina [~ 2500000] (imputed)	N
914	chr13	43128576	43128577	rs9525638	22792071	Zheng HF	2012-07-05	PLoS Genet	WNT16 influences bone mineral density, cortical bone thickness, bone strength, and osteoporotic fracture risk.	Cortical thickness	5,878 European ancestry individuals	1,032 European ancestry individuals	13q14.11	TNFSF11, RANKL	rs9525638-T	NR	4E-9		0.09	[0.051-0.129] mm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
914	chr13	43143028	43143029	rs17536328	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	13q14.11	TNFSF11	rs17536328-T	NR	3E-7	(EA)	0.0866	[0.053-0.12] unit increase	Illumina [~ 2500000] (imputed)	N
914	chr13	43143028	43143029	rs17536328	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	13q14.11	TNFSF11	rs17536328-T	0.42	8E-9		0.086	[0.057-0.115] unit increase	Illumina [~ 2500000] (imputed)	N
914	chr13	43148545	43148546	rs138818878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	TNFSF11	rs138818878-C	0.973952	6E-15		0.043973	[0.033-0.055] unit decrease	NR [13737936] (imputed)	N
914	chr13	43148545	43148546	rs138818878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs138818878-?	NR	1E-24				NR [~ 8900000] (imputed)	N
914	chr13	43153868	43153869	rs117543324	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs117543324-?	NR	3E-21		0.0570335	[0.045-0.069] unit decrease	Affymetrix [20259828] (imputed)	N
914	chr13	43162062	43162063	rs2148072	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	13q14.11	TNFSF11	rs2148072-G	0.63	2E-6	(Conditional)	0.0723	[0.043-0.102] unit increase	Illumina [~ 2500000] (imputed)	N
914	chr13	43165467	43165468	rs346588	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	TNFSF11	rs346588-A	0.8255440000000001	3E-12		0.0171966	[0.012-0.022] unit increase	NR [13737936] (imputed)	N
914	chr13	43167512	43167513	rs346592	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs346592-?	NR	2E-11		0.0175208	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
914	chr13	43175220	43175221	rs9566993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs9566993-T	NR	9E-12		0.0684	[0.049-0.088] unit increase	Affymetrix [9000000] (imputed)	N
914	chr13	43189224	43189225	rs9533177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	13q14.11		rs9533177-T	0.459766	5E-26		0.0410982	[0.033-0.049] unit decrease	Illumina [13474352] (imputed)	N
914	chr13	43189224	43189225	rs9533177	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	13q14.11	TNFSF11, FAM216B	rs9533177-?	NR	4E-21		0.04133	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
914	chr13	43200102	43200103	rs78667121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs78667121-A	NR	3E-21		0.0655	[0.052-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
914	chr13	43200102	43200103	rs78667121	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs78667121-A	0.0329	6E-16	(European)	0.1557	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
914	chr13	43200102	43200103	rs78667121	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs78667121-A	0.0325	2E-13		0.1326	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
915	chr13	43287226	43287227	rs9525667	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Osteoporosis	443 Korean ancestry cases, 2,223 Korean ancestry controls	NA	13q14.11	NR	rs9525667-T	NR	4E-6		1.516	[1.271-1.81]	Affymetrix [NR]	N
915	chr13	43291288	43291289	rs1323612	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q14.11	NR	rs1323612-?	NR	5E-6	(Native Hawaiian)	0.6004	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
915	chr13	43293242	43293243	rs73178050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q14.11	NR	rs73178050-A	NR	4E-9		0.0396	[0.026-0.053] unit increase	Affymetrix [9000000] (imputed)	N
915	chr13	43331786	43331787	rs79927049	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	13q14.11	NR	rs79927049-A	0.9844	2E-8	(European)	0.1719	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
915	chr13	43369699	43369700	rs12428019	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	13q14.11	FAM216B, EPSTI1	rs12428019-A	0.25	4E-6		0.28	unit decrease	Illumina [5600000] (imputed)	N
916	chr13	43397280	43397281	rs149774570	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	13q14.11	Intergenic	rs149774570-T	NR	3E-6		2.15061	[1.25-3.05] unit decrease	Illumina [13520550] (imputed)	N
916	chr13	43515753	43515753	rs11383827	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q14.11	NR	rs11383827-GA	0.228	4E-6	(EA)	0.0372	[0.022-0.053] unit decrease	Illumina [~ 11800000] (imputed)	N
917	chr13	43521226	43521227	rs9533317	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	13q14.11	EPSTI1	rs9533317-?	NR	8E-6		1.4	[NR]	Illumina [688067]	N
917	chr13	43531587	43531588	rs1540951	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	13q14.11	EPSTI1	rs1540951-A	0.334	3E-6		0.075	[0.044-0.106] unit decrease	Affymetrix [7287191] (imputed)	N
917	chr13	43555802	43555803	rs11618401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs11618401-?	NR	7E-11				NR [~ 8900000] (imputed)	N
917	chr13	43555802	43555803	rs11618401	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs11618401-?	NR	4E-11		0.014084	[0.01-0.0182] unit decrease	Affymetrix [20259828] (imputed)	N
917	chr13	43559767	43559768	rs12855887	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	EPSTI1	rs12855887-A	0.522265	4E-12		0.0129997	[0.0093-0.0167] unit decrease	NR [13737936] (imputed)	N
917	chr13	43570800	43570801	rs17064002	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.11	EPSTI1	rs17064002-A	0.0070	7E-7	(Birth weight )	0.06	[NR] kg increase	Illumina [899892]	N
917	chr13	43631897	43631898	rs56686332	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety and major depressive disorders	972 European ancestry adult anxiety disorder cases, 832 adult major depressive disorder cases, 920 child anxiety disorder cases	NA	13q14.11	DNAJC15, ENOX1, EPSTI1, LINC00400	rs56686332-T	0.08	5E-6		0.25	[0.13-0.37] unit increase	Illumina [4710000] (imputed)	N
918	chr13	43727848	43727849	rs1324015	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q14.11	DNAJC15	rs1324015-?	0.4193	9E-6	(PC1)			Illumina [475971]	N
918	chr13	43756954	43756955	rs61246028	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	13q14.11	LINC00400	rs61246028-?	NR	3E-6		4.703	[NR] z score increase	Illumina [6737359] (imputed)	N
918	chr13	43756954	43756955	rs61246028	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	13q14.11	LINC00400	rs61246028-?	NR	3E-6		4.703	z score increase	Illumina [6737359] (imputed)	N
918	chr13	43770473	43770474	rs9533425	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q14.11	ENOX1	rs9533425-G	0.801	2E-9	(Fibrin lag time)	0.308	[0.21-0.41] unit decrease	Illumina [NR] (imputed)	N
919	chr13	43791458	43791459	rs895040	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	13q14.11	ENOX1	rs895040-G	NR	5E-6		12.19	NR unit decrease	Illumina [up to 299604]	N
919	chr13	43828101	43828102	rs57444328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs57444328-C	0.02439	5E-10	(SEPT7)	0.05283	NR unit increase	Illumina [1671387] (imputed)	N
919	chr13	43828101	43828102	rs57444328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs57444328-C	0.02439	3E-9	(RSU1)	0.03924	NR unit increase	Illumina [1671387] (imputed)	N
919	chr13	43828101	43828102	rs57444328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs57444328-C	0.02439	2E-10	(CAPN2)	0.04236	NR unit increase	Illumina [1671387] (imputed)	N
919	chr13	43828101	43828102	rs57444328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs57444328-C	0.02439	1E-8	(GGT5)	0.06329	NR unit increase	Illumina [1671387] (imputed)	N
919	chr13	43834269	43834270	rs17538444	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	13q14.11	ENOX1	rs17538444-T	0.0698752	4E-7	(% improvement - SSRI treated - 12 weeks)	0.3905	[0.24-0.54] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
920	chr13	44010411	44010412	rs2025481	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q14.11		rs2025481-?	NR	7E-6		1.0424372	[1.0236687519536-1.06154984078311]	Illumina [7827597] (imputed)	N
920	chr13	44017096	44017097	rs189688109	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	13q14.11		rs189688109-T	NR	4E-6	(GLM)	2.713	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
921	chr13	44085944	44085945	rs3884613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q14.11		rs3884613-?	NR	4E-8				NR [~ 8900000] (imputed)	N
921	chr13	44160283	44160284	rs9533536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs9533536-T	0.01568	7E-9	(PSMD11)	0.1621	NR unit increase	Illumina [1671387] (imputed)	N
921	chr13	44166995	44166996	rs7319075	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	13q14.11	ENOX1	rs7319075-?	NR	4E-9		1.085	[1.056-1.116]	Illumina [13729857] (imputed)	N
921	chr13	44168683	44168684	rs78235548	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs78235548-T	0.0122	9E-9	(C4B)	0.6603	NR unit increase	Illumina [1671387] (imputed)	N
922	chr13	44217063	44217064	rs4942242	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	13q14.11	ENOX1	rs4942242-?	0.47	2E-7	(CHAQ, RF+)	0.13	[NR] unit decrease	Illumina [534053]	N
922	chr13	44232125	44232126	rs1809803	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.11	NR	rs1809803-?	NR	5E-9				Affymetrix [NR]	N
922	chr13	44239180	44239181	rs145463728	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	13q14.11		rs145463728-?	NR	5E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
922	chr13	44270893	44270894	rs395138	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	13q14.11	ENOX1	rs395138-?		1E-8				NR [6786993] (imputed)	N
922	chr13	44286973	44286974	rs6561139	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	13q14.11	NR	rs6561139-?	NR	5E-6		0.852503	[0.49-1.22] unit increase	NR [13958389] (imputed)	N
923	chr13	44327798	44327799	rs4143229	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	13q14.11	NR	rs4143229-C	NR	3E-10		1.0526316		NR [NR] (imputed)	N
923	chr13	44327798	44327799	rs4143229	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	13q14.11	ENOX1, LACC1, CCDC122	rs4143229-C	0.08	3E-8		1.0526316	[1.03-1.07]	NR [9622763] (imputed)	N
923	chr13	44351232	44351233	rs11147928	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	13q14.11	ENOX1	rs11147928-G	NR	5E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
923	chr13	44431908	44431909	rs182333180	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	13q14.11		rs182333180-C	NR	1E-6	(GLM)	3.0708	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
923	chr13	44431908	44431909	rs182333180	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	13q14.11		rs182333180-C	NR	1E-6	(GLM)	11.3945	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
924	chr13	44440197	44440198	rs78547569	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	13q14.11		rs78547569-?	NR	5E-6	(MLM)	0.6972073	[0.4-1] unit increase	Illumina [~ 9000000] (imputed)	N
924	chr13	44440197	44440198	rs78547569	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	13q14.11		rs78547569-?	NR	2E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
924	chr13	44457924	44457925	rs3764147	32421744	Gzara C	2020-05-18	PLoS Pathog	Family-based genome-wide association study of leprosy in Vietnam.	Leprosy	1,749 Vietnamese ancestry cases	1,181 Vietnamese ancestry cases, 688 Vietnamese ancestry controls	13q14.11	LACC1	rs3764147-G	0.35	5E-14		1.52	[1.41-1.63]	Illumina [5607170] (imputed)	N
924	chr13	44457924	44457925	rs3764147	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	13q14.11	LACC1, CCDC122	rs3764147-?		3E-8				Illumina [9725440] (imputed)	N
924	chr13	44457924	44457925	rs3764147	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	13q14.11	LACC1, CCDC122	rs3764147-?		1E-13				Illumina [9560910] (imputed)	N
924	chr13	44457924	44457925	rs3764147	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs3764147-G	0.2297	9E-16	(EA)	1.099218	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
924	chr13	44457924	44457925	rs3764147	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	13q14.11	LACC1	rs3764147-G	0.248	2E-21		1.155	[1.112-1.199]	Affymetrix, Illumina [1230000] (imputed)	N
924	chr13	44457924	44457925	rs3764147	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	13q14.11	C13orf31	rs3764147-G	0.245	1E-10		1.17	[1.12-1.23]	Affymetrix, Illumina [953241] (imputed)	N
924	chr13	44457924	44457925	rs3764147	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	13q14.11	C13orf31	rs3764147-G	0.31	4E-54		1.68	[1.57-1.80]	Illumina [491883]	N
924	chr13	44457924	44457925	rs3764147	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	13q14.11	Unknown	rs3764147-G	0.22	2E-13		1.25	[NR]	Affymetrix, Illumina [635547] (imputed)	N
924	chr13	44471876	44471877	rs9567307	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	13q14.11	LACC1	rs9567307-T	0.314	1E-93		1.58	[NR]	Illumina [4577171] (imputed)	N
924	chr13	44472254	44472255	rs7321596	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q14.11	LACC1	rs7321596-?	NR	3E-8		0.01094624	[0.0071-0.0148] unit decrease	NR [7306098]	N
924	chr13	44473865	44473866	rs2121034	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	13q14.11	LACC1	rs2121034-T	NR	9E-9		0.7934		Illumina [up to 1244428] (imputed)	N
924	chr13	44474516	44474517	rs8002861	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	13q14.11	LACC1	rs8002861-A	0.67	7E-6		1.1111112	[NR]	Illumina [4577171] (imputed)	N
924	chr13	44484705	44484706	rs6561151	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	13q14.11	LINC00284	rs6561151-?	NR	1E-22	(subset analysis)			Illumina [130052]	N
924	chr13	44484705	44484706	rs6561151	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q14.11	NR	rs6561151-?	NR	5E-25	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
924	chr13	44490180	44490181	rs61960013	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	13q14.11	LOC107984576	rs61960013-G	0.211368	7E-9		1.0436537	[1.02866995432231-1.05885583650163]	NR [9572556] (imputed)	N
924	chr13	44557666	44557667	rs73177327	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	13q14.11		rs73177327-C	NR	7E-7	(GLM)	3.781	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
925	chr13	44593910	44593911	rs9595049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q14.11		rs9595049-T	NR	1E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
925	chr13	44627787	44627788	rs17065323	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	13q14.11	SMIM2	rs17065323-T	0.006	3E-10	(EA)	0.168	[0.12-0.22] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
925	chr13	44627787	44627788	rs17065323	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q14.11	SMIM2	rs17065323-T	0.006	1E-8	(EA)	0.139	[0.092-0.186] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
925	chr13	44627787	44627788	rs17065323	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	13q14.11	NR	rs17065323-?	NR	4E-6		4.29	[NR] mg/dl decrease in uric acid levels	Affymetrix [361034]	N
925	chr13	44643464	44643465	rs181534711	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	13q14.11		rs181534711-G	NR	3E-8	(GLM)	20.6563	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
925	chr13	44650531	44650532	rs4597218	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	13q14.11	TGTF2F2	rs4597218-?	NR	1E-9				Illumina [747780]	N
925	chr13	44650531	44650532	rs4597218	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	13q14.11	GTF2F2	rs4597218-?	NR	3E-10	(>=14 yr)			Illumina [747780]	N
925	chr13	44679329	44679330	rs191581512	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	13q14.11		rs191581512-G	NR	6E-8	(GLM)	6.736	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
925	chr13	44679329	44679330	rs191581512	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	13q14.11		rs191581512-G	NR	2E-6	(GLM)	4.7236	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
925	chr13	44684599	44684600	rs10507524	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	13q14.11	NR	rs10507524-C	0.1	1E-8		0.018	[0.012-0.024] unit increase	Affymetrix [2446094] (imputed)	N
925	chr13	44684599	44684600	rs10507524	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	13q14.11	NR	rs10507524-C	0.1	5E-8				Affymetrix [2446094] (imputed)	N
925	chr13	44686063	44686064	rs20478	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	13q14.11	NR	rs20478-A	0.0983	5E-9		0.0176	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
925	chr13	44686063	44686064	rs20478	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	13q14.11	NR	rs20478-A	0.0983	2E-8		0.0168	[0.011-0.023] unit increase	NR [~ 27400000] (imputed)	N
926	chr13	44700013	44700014	rs7326891	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	13q14.11		rs7326891-?	NR	6E-6		0.23	[0.13-0.33] unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr13	44700230	44700231	rs6561160	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.11	NR	rs6561160-A	0.0122	3E-8	(PRDX4)	0.166	NR unit increase	Illumina [1671387] (imputed)	N
926	chr13	44702868	44702869	rs9525916	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	13q14.11	SERP2, LOC121838	rs9525916-T	0.43	5E-6	(Carbohydrate)			Affymetrix [590000]	N
926	chr13	44702868	44702869	rs9525916	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	13q14.11	SERP2, LOC121838	rs9525916-T	0.43	7E-6	(Carbohydrate)			Affymetrix [590000]	N
926	chr13	44706267	44706268	rs9595066	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	13q14.11	SMIM2	rs9595066-T	NR	1E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
926	chr13	44706267	44706268	rs9595066	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q14.11	NR	rs9595066-T	NR	4E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
926	chr13	44750551	44750552	rs117472820	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	13q14.11	NR	rs117472820-G		3E-6		0.5947	[0.34-0.85] SD units increase	NR [10700000] (imputed)	N
926	chr13	44765268	44765269	rs11838556	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q14.11	SMIM2	rs11838556-T	0.92	2E-6		0.035	[0.021-0.049] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
926	chr13	44805869	44805870	rs2282064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q14.11		rs2282064-?	NR	2E-8				NR [~ 8900000] (imputed)	N
926	chr13	44808173	44808174	rs9533799	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	13q14.11	intergenic	rs9533799-A	0.36	4E-6	(Joint)	1.17	[1.09-1.24]	Illumina [254145]	N
926	chr13	44811031	44811032	rs4942300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q14.11		rs4942300-?	NR	7E-25				NR [~ 8900000] (imputed)	N
926	chr13	44820607	44820608	rs9533803	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q14.11	MIR8079	rs9533803-T	0.2134	3E-19		0.0261	[0.02-0.032] unit decrease	Affymetrix [19819130] (imputed)	N
926	chr13	44820607	44820608	rs9533803	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	13q14.11	MIR8079	rs9533803-T	0.2134	3E-6		0.0132	[0.0077-0.0187] unit decrease	Affymetrix [19819130] (imputed)	N
926	chr13	44820766	44820767	rs2773285	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q14.11	NR	rs2773285-C	0.278027	3E-10		0.0221481	[0.015-0.029] unit increase	NR [19129689] (imputed)	N
927	chr13	44842502	44842503	rs9525927	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	13q14.11	SERP2	rs9525927-G	0.19	3E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
927	chr13	44842502	44842503	rs9525927	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	13q14.11	MIR8079, SMIM2, SERP2	rs9525927-?	0.833	2E-10		1.2004802	[1.14-1.27]	Illumina [238825]	N
927	chr13	44844834	44844835	rs7995617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.11		rs7995617-?	NR	6E-9				NR [~ 8900000] (imputed)	N
927	chr13	44846009	44846009	rs11411390	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.11		rs11411390-?	NR	2E-17		0.0277241	[0.021-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
927	chr13	44848337	44848338	rs7981875	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.11	MIR8079	rs7981875-A	0.90656	1E-16		0.0264152	[0.02-0.033] unit decrease	NR [13737936] (imputed)	N
927	chr13	44848337	44848338	rs7981875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.11		rs7981875-?	NR	1E-14				NR [~ 8900000] (imputed)	N
927	chr13	44872621	44872622	rs7982202	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.11	NR	rs7982202-?	NR	9E-6	(AA)	6.73	[5.36-8.1]	Illumina [905956]	N
927	chr13	44877317	44877318	rs9567406	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.11	NR	rs9567406-G	0.11	2E-10	(AA)	68.32	[63.32-73.32]	Illumina [905956]	N
927	chr13	44881570	44881571	rs9567411	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q14.11		rs9567411-G	0.24	6E-13		7.21	z score increase	Affymetrix [9061022] (imputed)	N
927	chr13	44881570	44881571	rs9567411	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q14.11	NR	rs9567411-G	0.2167	6E-12				NR [9056863] (imputed)	N
927	chr13	44884722	44884723	rs67602481	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q14.11		rs67602481-A	0.24	1E-13		7.44	z score increase	Affymetrix [9061022] (imputed)	N
928	chr13	44980149	44980150	rs9533843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q14.11	NR	rs9533843-A	0.46558999999999995	2E-8		0.00475747	[0.0031-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
928	chr13	44980149	44980150	rs9533843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q14.11	NR	rs9533843-A	0.46558999999999995	1E-10		0.00589656	[0.004-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
928	chr13	45025700	45025701	rs17065840	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.11	NR	rs17065840-?	NR	3E-7				Affymetrix [NR]	N
928	chr13	45055090	45055091	rs17065868	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	13q14.11	TSC22D1	rs17065868-?	NR	3E-6				Affymetrix [NR]	N
930	chr13	45224810	45224811	rs9595171	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.12	NR	rs9595171-T	0.05226	5E-9	(PSMB6)	0.0353	NR unit increase	Illumina [1671387] (imputed)	N
930	chr13	45252170	45252171	rs12866867	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	13q14.12	NR	rs12866867-A	0.2276	8E-6		0.0564297	NR unit decrease	Illumina [560351]	N
930	chr13	45252170	45252171	rs12866867	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	13q14.12	NR	rs12866867-A	0.2276	1E-6		0.0793227	NR unit decrease	Illumina [560351]	N
930	chr13	45303468	45303469	rs554766983	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	13q14.12	RP11-442J21.2	rs554766983-A	0.002	7E-7		0.8493	[0.51-1.19] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
930	chr13	45303468	45303469	rs554766983	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	13q14.12	RP11-442J21.2	rs554766983-A	0.002	8E-8		0.8747	[0.56-1.19] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
930	chr13	45334193	45334194	rs9533962	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	13q14.12	LINC00330	rs9533962-C	NR	9E-6		1.115	NR	Illumina [up to 11532644] (imputed)	N
930	chr13	45334193	45334194	rs9533962	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	13q14.12	LOC144817	rs9533962-C	0.406	8E-11		1.12	[1.08-1.15]	Illumina [up to 4778154] (imputed)	N
930	chr13	45334193	45334194	rs9533962	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	13q14.12	LOC144817	rs9533962-C	0.406	2E-8	(EA)	1.14	[1.09-1.19]	Illumina [up to 4778154] (imputed)	N
930	chr13	45339105	45339106	rs9526001	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q14.12	TSC22D1, NUFIP1	rs9526001-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
931	chr13	45373395	45373396	rs9533975	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q14.12	NR	rs9533975-T	0.5808	7E-7		0.0131	[0.0079-0.0183] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
931	chr13	45373395	45373396	rs9533975	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	13q14.12	NR	rs9533975-T	0.5793	6E-6		0.0159	[0.009-0.0228] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
931	chr13	45374420	45374421	rs11617859	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	13q14.12	TSC22D1, NUFIP1	rs11617859-T	NR	5E-6		0.397212	[0.23-0.57] unit decrease	Illumina [at least 950000] (imputed)	N
931	chr13	45429433	45429434	rs9567488	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	13q14.12	NR	rs9567488-T	0.2171	2E-6		0.1752	[0.1-0.25] unit increase	Illumina [10677593] (imputed)	N
931	chr13	45475581	45475582	rs114280567	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	13q14.12	intergenic	rs114280567-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
931	chr13	45477409	45477410	rs12865097	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	13q14.12	NUFIP1, TSC22D1, LINC003300	rs12865097-?	NR	7E-6		0.78	[0.45-1.11] unit increase	Illumina [1075436] (imputed)	N
932	chr13	45491898	45491899	rs1175396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.12		rs1175396-T	0.925426	1E-12		0.029864367	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45492137	45492138	rs73179655	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q14.12	NUFIP1	rs73179655-G	0.968588	1E-9		0.0334657	[0.023-0.044] unit decrease	Affymetrix [NR] (imputed)	N
932	chr13	45493880	45493881	rs17648246	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		13q14.12	NUFIP1	rs17648246-A	NR	1E-6		0.275	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
932	chr13	45503332	45503333	rs1177803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q14.12	NR	rs1177803-C	0.9257557	3E-23		0.042483173	[0.034-0.051] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45503332	45503333	rs1177803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q14.12	NR	rs1177803-C	0.9257446	5E-22		0.041235387	[0.033-0.05] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45503332	45503333	rs1177803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	13q14.12		rs1177803-C	0.925755	2E-14		0.032904293	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45503332	45503333	rs1177803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q14.12		rs1177803-C	0.9257438	2E-27		0.04620696	[0.038-0.055] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45503332	45503333	rs1177803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q14.12		rs1177803-C	0.9257334	1E-26		0.04542878	[0.037-0.054] unit increase	Affymetrix [93095623] (imputed)	N
932	chr13	45524625	45524626	rs9526023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q14.12	NR	rs9526023-A	NR	1E-9		0.0416	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
932	chr13	45524625	45524626	rs9526023	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q14.12	NUFIP1	rs9526023-G	0.969048	4E-9		0.0325768	[0.022-0.043] unit decrease	Affymetrix [NR] (imputed)	N
932	chr13	45545074	45545075	rs1175394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.12	NR	rs1175394-T	0.926226	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
932	chr13	45573931	45573932	rs61947797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.12		rs61947797-G	NR	3E-10		0.0287	[0.02-0.038] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
932	chr13	45588204	45588205	rs73181516	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	13q14.12	RP11-321C24.1, GPALPP1	rs73181516-G	0.0748	6E-10		0.04208536	[0.029-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
932	chr13	45588204	45588205	rs73181516	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	13q14.12	RP11-321C24.1, GPALPP1	rs73181516-G	0.0748	8E-11		0.04460671	[0.031-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
932	chr13	45588204	45588205	rs73181516	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	13q14.12	RP11-321C24.1, GPALPP1	rs73181516-G	0.0749	3E-10		0.04308981	[0.03-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
932	chr13	45605746	45605747	rs13829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.12	NR	rs13829-G	0.073769	8E-13		0.026068	[0.019-0.033] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
935	chr13	45886185	45886186	rs79490558	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	13q14.13	GTF2F2, TPT1	rs79490558-?	NR	1E-6		0.31	[0.17-0.45] unit increase	Illumina [1075436] (imputed)	N
935	chr13	45900266	45900267	rs7323755	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q14.13	intergenic	rs7323755-?	0.041	2E-13			[NR]	Affymetrix, Illumina [152234]	N
935	chr13	45905073	45905074	rs11618819	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	13q14.13		rs11618819-?	NR	2E-6		0.437	[0.26-0.62] unit increase	Illumina [5082878] (imputed)	N
935	chr13	45960628	45960629	rs9534136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q14.13		rs9534136-?	NR	1E-7				NR [~ 8900000] (imputed)	N
935	chr13	45970146	45970147	rs138358301	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	13q14.13		rs138358301-?	NR	1E-8		0.0727233	[0.047-0.098] unit increase	NR [9800000] (imputed)	N
935	chr13	45970146	45970147	rs138358301	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	13q14.13		rs138358301-?	NR	3E-10		0.0753369	[0.05-0.101] unit increase	NR [9800000] (imputed)	N
935	chr13	45970146	45970147	rs138358301	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	13q14.13		rs138358301-?	NR	3E-8		0.0661967	[0.041-0.092] unit increase	NR [9800000] (imputed)	N
935	chr13	45970146	45970147	rs138358301	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	13q14.13	NR	rs138358301-G	NR	7E-17		0.1201564	[0.092-0.148] unit increase	Illumina [242289]	N
935	chr13	45970146	45970147	rs138358301	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	13q14.13	NR	rs138358301-G	0.004	6E-11		0.16	unit increase	Illumina [242289]	N
936	chr13	46021542	46021543	rs151183316	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	13q14.13	TPT1-AS1	rs151183316-T	0.035	3E-8		30.6	[19.74-41.46] unit increase	Illumina [4962728] (imputed)	N
936	chr13	46036626	46036627	rs4444232	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	3,820 European ancestry cognitively unimpaired individuals	NA	13q14.13	NR	rs4444232-?	0.3854	3E-6		0.115635	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
936	chr13	46057285	46057286	rs12583793	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	13q14.13	COG3	rs12583793-A	0.06	2E-10	(capric acid)	0.41	[-1.844-2.664] unit increase	Illumina [~ 932000] (imputed)	N
936	chr13	46057285	46057286	rs12583793	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	13q14.13	COG3	rs12583793-A	0.06	5E-6	(capric acid)			Illumina [~ 932000]	N
936	chr13	46113462	46113463	rs117151283	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	13q14.13	FAM194B	rs117151283-G	0.027	2E-7		2.24	[1.66-3.04]	Illumina [8672852] (imputed)	N
936	chr13	46113983	46113984	rs2985994	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs2985994-C	NR	1E-8		0.07	[0.046-0.094] unit increase	Illumina [10461755] (imputed)	N
936	chr13	46113983	46113984	rs2985994	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	13q14.13		rs2985994-C	0.259	2E-7		0.066	[0.041-0.091] unit increase	Illumina [10461755] (imputed)	N
938	chr13	46290447	46290448	rs9316156	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.13	NR	rs9316156-?	NR	3E-7				Affymetrix [NR]	N
938	chr13	46295438	46295439	rs77418508	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q14.13	NR	rs77418508-?		2E-6				Illumina [4322238] (imputed)	N
938	chr13	46341500	46341501	rs75061684	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	13q14.13	intergenic	rs75061684-A	6.0E-4	5E-10		0.12517466	[0.086-0.165] m decrease	Illumina [24111857] (imputed)	N
938	chr13	46351664	46351665	rs77197299	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	13q14.13	NR	rs77197299-?		7E-6	(African)			Illumina [~ 5140000] (imputed)	N
938	chr13	46364452	46364453	rs75973613	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	13q14.13	SIAH3	rs75973613-A	0.9863	3E-6	(EA)	0.1088	[0.064-0.154] unit increase	Affymetrix, Illumina [NR] (imputed)	N
938	chr13	46396159	46396160	rs11620312	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	13q14.13	SIAH3	rs11620312-C	0.12	4E-8		0.023	NR unit increase	Illumina [1231747]	N
939	chr13	46408036	46408037	rs9526114	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	13q14.13	LOC283514	rs9526114-?	NR	6E-6		1.35	[NR]	Affymetrix [up to 10996499] (imputed)	N
939	chr13	46426325	46426326	rs7322153	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q14.13		rs7322153-T	0.49	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
939	chr13	46426325	46426326	rs7322153	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q14.13	NR	rs7322153-T	0.4804	7E-9				NR [9056863] (imputed)	N
939	chr13	46469206	46469207	rs17067414	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	13q14.13	NR	rs17067414-?		4E-6	(African)			Illumina [~ 5140000] (imputed)	N
939	chr13	46470376	46470377	rs7996510	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	13q14.13	NR	rs7996510-?		6E-6	(African)			Illumina [~ 5140000] (imputed)	N
939	chr13	46483514	46483515	rs2806899	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	13q14.13		rs2806899-A	0.622	2E-6		0.7		Illumina [5411567] (imputed)	N
939	chr13	46514491	46514492	rs6561273	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q14.13	NR	rs6561273-G	0.3995	8E-9		0.0303	[0.02-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
939	chr13	46516467	46516468	rs741668	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	13q14.13	ZC3H13	rs741668-?		5E-6		0.267	[NR] unit increase	Illumina [5970354] (imputed)	N
940	chr13	46530763	46530764	rs4129502	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPB2	5,359 Icelandic ancestry individuals	NA	13q14.13		rs4129502-G	0.03342	7E-24		0.51438	[0.41-0.61] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46530763	46530764	rs4129502	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD96	5,355 Icelandic ancestry individuals	NA	13q14.13		rs4129502-G	0.03342	7E-22		0.487416	[0.39-0.59] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46535349	46535350	rs4142548	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RHOD	5,366 Icelandic ancestry individuals	NA	13q14.13		rs4142548-A	0.2588	4E-18		0.185402	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46536290	46536291	rs12585823	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	ZC3H13	rs12585823-G	0.07801418	1E-11	(EA, MAP kinase-activated protein kinase 3)	0.5688	[0.41-0.73] unit increase	Affymetrix [509946]	N
940	chr13	46582454	46582455	rs5803322	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	ZC3H13	rs5803322-C	0.702	1E-12	(TOM1-like protein 1, TOM1L1.13652.2.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr13	46585050	46585051	rs9534280	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD96	5,355 Icelandic ancestry individuals	NA	13q14.13		rs9534280-C	0.4136	9E-23		0.186373	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
940	chr13	46594618	46594619	rs41284155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.13		rs41284155-?	NR	1E-10				NR [~ 8900000] (imputed)	N
940	chr13	46602161	46602162	rs2094247	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	NR	rs2094247-?	NR	6E-73	(EA, Carboxypeptidase B2)			Affymetrix [509946]	N
940	chr13	46605440	46605441	rs9534288	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	CPB2-AS1, ZC3H13, CPB2	rs9534288-T	0.2778345	1E-33	(Carboxypeptidase B2)	0.5958	[0.5-0.69] unit decrease	Affymetrix [509946]	N
940	chr13	46627438	46627439	rs1087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TDO2	5,364 Icelandic ancestry individuals	NA	13q14.13		rs1087-T	0.3547	3E-63		0.32757	[0.29-0.37] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46627438	46627439	rs1087	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	13q14.13	CPB2	rs1087-T	0.3511	3E-29		0.0832	[0.069-0.098] unit increase	Illumina [10000000] (imputed)	N
940	chr13	46627479	46627480	rs940	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	13q14.13	CPB2	rs940-G	0.235	1E-27		0.16	[0.13-0.19] unit increase	Illumina [10000000] (imputed)	N
940	chr13	46629210	46629211	rs532540191	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs532540191-T	0.711	5E-232	(Uncharacterized protein KIAA2013, KIAA2013.6538.90.3)	0.77	[0.73-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr13	46629210	46629211	rs532540191	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs532540191-T	0.711	1E-12	(TOM1-like protein 1, TOM1L1.13652.2.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr13	46629210	46629211	rs532540191	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs532540191-T	0.711	1E-114	(MAP kinase-activated protein kinase 3, MAPKAPK3.3822.54.2)	0.57	[0.51-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TOR1AIP1	5,365 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	3E-96		0.441805	[0.4-0.48] unit decrease	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TOM1L1	5,340 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	6E-30		0.228825	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAET1E	5,343 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	3E-92		0.40641	[0.37-0.45] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MIF	5,361 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	2E-13		0.153778	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNA10	5,358 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	8E-13		0.157508	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRLF2	5,364 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	6E-60		0.35986	[0.32-0.4] unit decrease	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPI	5,352 Icelandic ancestry individuals	NA	13q14.13		rs1926447-A	0.2396	1E-155		0.524307	[0.49-0.56] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46629943	46629944	rs1926447	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	13q14.13	NR	rs1926447-?	NR	3E-24	(MAPKAPK3)			Illumina [~ 4000000] (imputed)	N
940	chr13	46629943	46629944	rs1926447	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs1926447-G	0.711	5E-58	(NKG2D ligand 4, RAET1E.7800.85.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr13	46629943	46629944	rs1926447	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs1926447-G	0.711	3E-16	(UPF0488 protein C8orf33, C8orf33.9613.16.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
940	chr13	46629943	46629944	rs1926447	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	ZC3H13, CPB2, CPB2-AS1	rs1926447-A	0.2881699	2E-145	(EA, MAP kinase-activated protein kinase 3)	1.104	[1.03-1.17] unit increase	Affymetrix [509946]	N
940	chr13	46629943	46629944	rs1926447	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	ZC3H13, CPB2, CPB2-AS1	rs1926447-A	0.2881699	1E-12	(EA, Macrophage migration inhibitory factor)	0.3484	[0.25-0.44] unit increase	Affymetrix [509946]	N
940	chr13	46629994	46629995	rs1926446	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs1926446-A	0.711	1E-170	(Pirin, PIR.13634.209.3)	0.69	[0.65-0.73] unit increase	Affymetrix [10572788] (imputed)	N
940	chr13	46640836	46640837	rs6561283	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TDO2	5,364 Icelandic ancestry individuals	NA	13q14.13		rs6561283-A	0.2172	9E-84		0.441424	[0.4-0.49] unit decrease	Illumina [7506463] (imputed)	N
940	chr13	46641248	46641249	rs9526137	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs9526137-G	0.325	2E-15	(Regulation of nuclear pre-mRNA domain-containing protein 1A, RPRD1A.13515.8.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
940	chr13	46641262	46641263	rs9526138	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	NR	rs9526138-C	0.324	1E-109	(Pirin, PIR.13634.209.3)	0.55	[0.51-0.59] unit increase	Affymetrix [10572788] (imputed)	N
940	chr13	46643560	46643561	rs7993537	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	13q14.13	NR	rs7993537-?	NR	9E-49	(TAFI)			Illumina [~ 4000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	9E-23	(KIAA2013, 6538_90_3)	0.25568014	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	9E-14	(CD96, 9560_56_3)	0.19202578	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	8E-11	(PLG, 4151_6_2)	0.16829109	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	6E-16	(TOR1AIP1, 10606_34_3)	0.21165901	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	4E-96	(CALB1, 9918_23_3)	0.52658343	[0.48-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	4E-9	(CCL25, 14068_29_3)	0.14958033	[0.1-0.199] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	3E-80	(PIR, 13634_209_3)	0.4888511	[0.44-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	3E-38	(TDO2, 9880_33_3)	0.33504194	[0.28-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	3E-13	(APLN, 6622_90_3)	0.18351267	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	3E-115	(CPB2, 3518_54_2)	0.5760555	[0.53-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	1E-9	(CRLF2, 13694_24_3)	0.15782377	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr13	46644492	46644493	rs4942471	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs4942471-C	0.65578125	1E-10	(ALPI, 10463_23_3)	0.16878548	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
940	chr13	46647536	46647537	rs9534309	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TAFI plasma levels	400 French ancestry individuals	NA	13q14.13		rs9534309-C	NR	1E-12		0.106	[0.081-0.131] ug/mL increase	Illumina [5201092] (imputed)	N
940	chr13	46648093	46648094	rs3742264	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	CPB2, ZC3H13, CPB2-AS1	rs3742264-T	0.320603	3E-83	(Carboxypeptidase B2)	0.849	[0.77-0.93] unit increase	Affymetrix [509946]	N
940	chr13	46650120	46650121	rs9534311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLG	5,357 Icelandic ancestry individuals	NA	13q14.13		rs9534311-G	0.3466	5E-20		0.175469	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46650545	46650546	rs9534313	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPB2	5,359 Icelandic ancestry individuals	NA	13q14.13		rs9534313-G	0.3466	5E-194		0.548188	[0.51-0.58] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46650545	46650546	rs9534313	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CALB1	5,366 Icelandic ancestry individuals	NA	13q14.13		rs9534313-G	0.3466	5E-175		0.528207	[0.49-0.56] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46650545	46650546	rs9534313	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APLN	5,336 Icelandic ancestry individuals	NA	13q14.13		rs9534313-G	0.3466	1E-18		0.155521	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46651079	46651080	rs9567615	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIR	5,364 Icelandic ancestry individuals	NA	13q14.13		rs9567615-C	0.3462	8E-155		0.500618	[0.46-0.54] unit increase	Illumina [7506463] (imputed)	N
940	chr13	46651107	46651108	rs9567617	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs9567617-G	0.324	5E-109	(Calbindin, CALB1.9918.23.3)	0.55	[0.51-0.59] unit increase	Affymetrix [10572788] (imputed)	N
941	chr13	46670346	46670347	rs17844003	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	CPB2-AS1, CPB2	rs17844003-C	0.195171	1E-11	(EA, MAP kinase-activated protein kinase 3)	0.3767	[0.27-0.48] unit decrease	Affymetrix [509946]	N
941	chr13	46681510	46681511	rs35814191	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.13	CPB2	rs35814191-T	0.352	2E-14	(Ubiquitin domain-containing protein 2, UBTD2.12875.28.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
941	chr13	46682254	46682255	rs56734909	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	13q14.13	CPB2	rs56734909-A	0.343	5E-30		0.09	[0.074-0.106] unit increase	Illumina [10000000] (imputed)	N
941	chr13	46694715	46694716	rs11618432	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs11618432-T	0.77203125	8E-9	(ALPI, 10463_23_3)	0.17059524	[0.11-0.23] unit increase	Illumina [> 1000000] (imputed)	N
941	chr13	46694715	46694716	rs11618432	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	NR	rs11618432-T	0.77203125	5E-12	(KIAA2013, 6538_90_3)	0.2044574	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
941	chr13	46694715	46694716	rs11618432	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.13	LCP1	rs11618432-T	0.77203125	2E-7	(LCP1, 9749_190_3)	0.15228413	[0.095-0.21] unit increase	Illumina [> 1000000] (imputed)	N
941	chr13	46701173	46701174	rs4391952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.13		rs4391952-C	NR	6E-11		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
941	chr13	46702153	46702156	rs765809072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.13	LCP1	rs765809072-T	0.222066	2E-14		0.021438712	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
941	chr13	46703141	46703142	rs7324845	23213074	Adams LA	2012-12-05	Hepatology	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NA	13q14.13	LCP1	rs7324845-A	0.096	3E-6		3.29	[0.76-5.82]	Illumina [2078805] (imputed)	N
941	chr13	46707136	46707137	rs9534338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.13	NR	rs9534338-C	0.455062	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
941	chr13	46707136	46707137	rs9534338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.13	NR	rs9534338-C	0.459888	1E-15		0.015145	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
941	chr13	46707136	46707137	rs9534338	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.13	LCP1	rs9534338-C	0.4523571	8E-13	(EA, MAP kinase-activated protein kinase 3)	0.3132	[0.23-0.4] unit decrease	Affymetrix [509946]	N
941	chr13	46712817	46712818	rs758410524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q14.13	LCP1	rs758410524-A	1.61999999999995E-4	1E-10		0.63516366	[0.44-0.83] unit increase	Affymetrix [93095623] (imputed)	N
941	chr13	46712817	46712818	rs758410524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q14.13	LCP1	rs758410524-A	1.61999999999995E-4	3E-10		0.62199533	[0.43-0.82] unit decrease	Affymetrix [93095623] (imputed)	N
941	chr13	46712817	46712818	rs758410524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q14.13	LCP1	rs758410524-A	1.61999999999995E-4	2E-9		0.5896538	[0.4-0.78] unit increase	Affymetrix [93095623] (imputed)	N
941	chr13	46713075	46713076	rs149937479	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LCP1	rs149937479-?	NR	5E-10	(male)	4.54774	[NR] unit decrease	Affymetrix [NR] (imputed)	N
941	chr13	46723714	46723715	rs1886039	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LCP1	rs1886039-?	NR	4E-6	(male)	0.795949	[NR] unit decrease	Affymetrix [NR] (imputed)	N
941	chr13	46753026	46753027	rs137941114	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.13	NR	rs137941114-G	0.01394	6E-10	(STAT1)	0.1142	NR unit increase	Illumina [1671387] (imputed)	N
941	chr13	46785520	46785521	rs912784	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	13q14.13	LCP1, LRRC63	rs912784-T		6E-7		1.29	[1.17-1.42]	Illumina [644674]	N
942	chr13	46833716	46833717	rs958546	17903304	Larson MG	2007-09-19	BMC Med Genet	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 cases and 1,190 controls from 310 families	NA	13q14.13	intergenic	rs958546-?	NR	5E-6				Affymetrix [70897]	N
942	chr13	46841551	46841552	rs10507540	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	13q14.13	LRRC63	rs10507540-?	NR	6E-8		2.2	[1.42-2.98] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
942	chr13	46850628	46850629	rs73470032	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.13	NR	rs73470032-A	0.02091	9E-9	(AK1)	0.07966	NR unit decrease	Illumina [1671387] (imputed)	N
942	chr13	46850628	46850629	rs73470032	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.13	NR	rs73470032-A	0.02091	2E-8	(PSME1)	0.6102	NR unit decrease	Illumina [1671387] (imputed)	N
943	chr13	46928886	46928887	rs182949672	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q14.13	KIAA0226L	rs182949672-T	NR	2E-6	(men)	0.7005	[0.41-0.99] unit decrease	Illumina [13520550] (imputed)	N
943	chr13	46935651	46935652	rs139968164	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	13q14.13	KIAA0226	rs139968164-?	0.0025	9E-6				Illumina [308166]	N
944	chr13	47093501	47093502	rs7996004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.13		rs7996004-?	NR	1E-17				NR [~ 8900000] (imputed)	N
944	chr13	47112119	47112120	rs6561319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q14.13		rs6561319-A	NR	1E-14		0.0103	[0.0078-0.0128] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
944	chr13	47128600	47128601	rs7325799	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.13	NR	rs7325799-T	0.0199	4E-6	(Total trans-18:1, EA)	0.1777	[0.1-0.25] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
944	chr13	47153598	47153598	rs138919787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	13q14.13	LRCH1	rs138919787-CT	0.782176	2E-11		0.018519433	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
944	chr13	47180670	47180671	rs7491248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q14.13		rs7491248-A	NR	4E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
945	chr13	47189927	47189928	rs912434	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q14.13	LRCH1	rs912434-T	0.7616	6E-14		0.2151	[0.16-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
945	chr13	47192048	47192049	rs9534439	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	13q14.13	LRCH1	rs9534439-?		3E-15				NR [7428630] (imputed)	N
945	chr13	47192048	47192049	rs9534439	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	13q14.13	LRCH1	rs9534439-T	0.19	1E-16		0.02	unit increase	Affymetrix [8928767] (imputed)	N
945	chr13	47215217	47215218	rs1408224	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	13q14.13	LRCH1	rs1408224-?	NR	4E-10	(EA)	134.77	[92.65-176.89] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
945	chr13	47225744	47225745	rs9526212	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	13q14.13	LRCH1	rs9526212-?	NR	5E-10				NR [~ 8000000] (imputed)	N
945	chr13	47225744	47225745	rs9526212	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	13q14.13	LRCH1	rs9526212-?	NR	2E-8				NR [~ 8000000] (imputed)	N
945	chr13	47225744	47225745	rs9526212	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	13q14.13	LRCH1	rs9526212-?	NR	9E-10				NR [~ 8000000] (imputed)	N
945	chr13	47225744	47225745	rs9526212	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	13q14.13	LRCH1	rs9526212-?	NR	4E-8				NR [~ 8000000] (imputed)	N
945	chr13	47230193	47230194	rs842406	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	13q14.13	NR	rs842406-?		3E-9				NR [7428630] (imputed)	N
945	chr13	47234658	47234659	rs9534454	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q14.13	NR	rs9534454-T	0.2411	1E-17				NR [9056863] (imputed)	N
945	chr13	47237212	47237213	rs9526214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	13q14.13		rs9526214-T	0.22	7E-6				NR [13131314] (imputed)	N
945	chr13	47237212	47237213	rs9526214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q14.13		rs9526214-T	0.22	4E-77		18.59	z score increase	Affymetrix [9061022] (imputed)	N
945	chr13	47237212	47237213	rs9526214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q14.13		rs9526214-T	0.22	2E-33		12.05	z score increase	Affymetrix [9061022] (imputed)	N
945	chr13	47237212	47237213	rs9526214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q14.13		rs9526214-T	0.22	6E-29		11.17	z score increase	Affymetrix [9061022] (imputed)	N
945	chr13	47237212	47237213	rs9526214	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q14.13	NR	rs9526214-T	0.2411	1E-17				NR [9056863] (imputed)	N
945	chr13	47237951	47237952	rs9534458	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	13q14.13		rs9534458-?	NR	5E-8				Affymetrix [NR] (imputed)	N
945	chr13	47237951	47237952	rs9534458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q14.13	LRCH1	rs9534458-A	0.653868	6E-175		0.06696016	[0.062-0.072] unit increase	Affymetrix [93095623] (imputed)	N
945	chr13	47238716	47238717	rs9590974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.13	NR	rs9590974-A	0.655966	1E-22				Affymetrix, Illumina [24588908] (imputed)	N
945	chr13	47238716	47238717	rs9590974	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	13q14.13	LRCH1	rs9590974-C	0.34	1E-19		1.1	[0.86-1.34] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
945	chr13	47238716	47238717	rs9590974	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	13q14.13	LRCH1	rs9590974-A	0.646	2E-8		1.193	[0.78-1.61] unit decrease	Illumina [2300000] (imputed)	N
945	chr13	47238853	47238854	rs842370	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	13q14.13		rs842370-?	NR	2E-17				NR [9705931] (imputed)	N
945	chr13	47239852	47239853	rs8001925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.13	NR	rs8001925-G	0.348713	7E-48				Affymetrix, Illumina [17210439] (imputed)	N
945	chr13	47241833	47241834	rs9534461	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	13q14.13	LRCH1	rs9534461-A	0.642	1E-10		1.229	[0.86-1.6] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
945	chr13	47242064	47242065	rs7993628	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.13	LRCH1	rs7993628-T	0.350845	9E-27	(-22 ms)	0.0615952	[0.05-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
945	chr13	47242064	47242065	rs7993628	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.13	LRCH1	rs7993628-T	0.350845	1E-25	(-24 ms)	0.0605554	[0.049-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
945	chr13	47242103	47242104	rs7992307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q14.13	NR	rs7992307-G	0.655487	9E-21		0.018029	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
945	chr13	47242857	47242865	rs143636430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q14.13	LRCH1	rs143636430-C	0.650905	7E-13		0.0171616	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
945	chr13	47242857	47242865	rs143636430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q14.13	LRCH1	rs143636430-C	0.65	3E-13		0.02800856	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
945	chr13	47242911	47242912	rs4941565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q14.13	LRCH1	rs4941565-G	0.65355	3E-35		0.029416317	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr13	47242926	47242927	rs3742271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q14.13	NR	rs3742271-G	0.346433	3E-10		0.012486	[0.0086-0.0164] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
945	chr13	47242926	47242927	rs3742271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q14.13	NR	rs3742271-G	0.346375	4E-49		0.029818	[0.026-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
945	chr13	47243195	47243196	rs41284185	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q14.13		rs41284185-G	0.0768	2E-11		0.29840213	[0.21-0.38] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
945	chr13	47243195	47243196	rs41284185	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q14.13		rs41284185-G	0.0769	5E-13		0.21811716	[0.16-0.28] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
945	chr13	47244161	47244162	rs4245338	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q14.13	LRCH1	rs4245338-G	0.3528	4E-35		0.8203	[0.69-0.95] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
945	chr13	47245632	47245633	rs7983898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q14.13		rs7983898-C	NR	3E-14		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
945	chr13	47246048	47246049	rs9645995	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.13	NR	rs9645995-?	NR	8E-21				Affymetrix [NR]	N
945	chr13	47246823	47246824	rs9534463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q14.13	LRCH1	rs9534463-G	0.5669	2E-30		0.04200578	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
945	chr13	47250343	47250344	rs11620465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q14.13	LRCH1	rs11620465-T	0.524	3E-30		0.0426682	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
945	chr13	47262573	47262574	rs78838977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q14.13		rs78838977-?	NR	1E-10				NR [~ 8900000] (imputed)	N
945	chr13	47287164	47287165	rs17282236	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	13q14.2	LRCH1	rs17282236-G	NR	5E-6		0.0547333	[0.031-0.078] unit increase	Illumina [13520550] (imputed)	N
945	chr13	47290416	47290417	rs145057384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q14.2	LRCH1	rs145057384-T	0.00650600000000001	3E-9		0.08934358	[0.06-0.119] unit increase	Affymetrix [93095623] (imputed)	N
945	chr13	47314171	47314172	rs17355629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q14.2	LRCH1	rs17355629-A	0.0645	2E-8		0.2479	[0.16-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
946	chr13	47342772	47342773	rs1216987	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESD	5,360 Icelandic ancestry individuals	NA	13q14.2		rs1216987-T	0.08911	6E-12		0.225424	[0.16-0.29] unit decrease	Illumina [7506463] (imputed)	N
946	chr13	47342772	47342773	rs1216987	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q14.2	ESD	rs1216987-A	0.913125	1E-7	(ESD, 4984_83_1)	0.22885652	[0.14-0.31] unit increase	Illumina [> 1000000] (imputed)	N
946	chr13	47345629	47345630	rs15303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.2	NR	rs15303-T	0.021	4E-85	(S-formylglutathione hydrolase, ESD.4984.83.1)	1.64	[1.48-1.8] unit decrease	Affymetrix [10572788] (imputed)	N
946	chr13	47350481	47350482	rs2794658	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	13q14.2	NR	rs2794658-?	NR	4E-16	(Esterase D)			Illumina [~ 4000000] (imputed)	N
946	chr13	47362383	47362384	rs8192888	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.2	ESD	rs8192888-C	0.094	1E-88	(S-formylglutathione hydrolase, ESD.4984.83.1)	0.81	[0.73-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
946	chr13	47377927	47377928	rs947409	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.2	ESD	rs947409-G	0.09929435	2E-52	(S-formylglutathione hydrolase)	1.061	[0.93-1.19] unit decrease	Affymetrix [509946]	N
946	chr13	47377927	47377928	rs947409	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	13q14.2	NR	rs947409-?	NR	2E-15	(S-formylglutathione hydrolase)			Illumina [514227]	N
946	chr13	47417037	47417038	rs9526238	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HTR2A	rs9526238-?	NR	8E-9	(female)	2.36919	[NR] unit decrease	Affymetrix [NR] (imputed)	N
946	chr13	47420311	47420312	rs6561333	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q14.2	HTR2A, HTR2A-AS1	rs6561333-T	0.4606061	3E-14	(EA, S-formylglutathione hydrolase)	0.3453	[0.26-0.43] unit increase	Affymetrix [509946]	N
946	chr13	47429445	47429446	rs7984966	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	13q14.2	HTR2A	rs7984966-?	0.245	2E-6		1.61	[NR]	Illumina [3922209] (imputed)	N
946	chr13	47446664	47446665	rs2770297	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	13q14.2	Intergenic	rs2770297-?		3E-6				NR [NR]	N
947	chr13	47472265	47472266	rs731245	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	13q14.2	NR	rs731245-?		7E-6		1.46	[NR]	Illumina [NR] (imputed)	N
947	chr13	47542520	47542521	rs1410656	29325163	Hong J	2018-01-09	J Clin Endocrinol Metab	Trans-ethnic Evaluation Identifies Novel Low Frequency Loci Associated with 25-Hydroxyvitamin D Concentrations.	Serum 25-Hydroxyvitamin D levels	8,541 African American individuals, 3,485 Hispanic American individuals, 16,124 European ancestry individuals	NA	13q14.2	HTR2A	rs1410656-C	0.94	4E-9		5.896	(z-score) decrease	Affymetrix, Illumina [at least 398246] (imputed)	N
947	chr13	47573615	47573616	rs12583882	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q14.2	HTR2A	rs12583882-G	0.34	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
948	chr13	47586211	47586212	rs9567768	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	13q14.2	NR	rs9567768-?	NR	2E-8		0.2178	NR	Illumina [802276]	N
949	chr13	47710484	47710485	rs11148036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.2	NR	rs11148036-?	NR	3E-16				Affymetrix [NR]	N
949	chr13	47840999	47841000	rs7994542	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	13q14.2		rs7994542-T	NR	7E-7		0.321	unit increase	Illumina [8524982] (imputed)	N
950	chr13	47843376	47843377	rs9534578	24993907	Smolonska J	2014-07-03	Eur Respir J	Common genes underlying asthma and COPD? Genome-wide analysis on the Dutch hypothesis.	Asthma or chronic obstructive pulmonary disease	920 European ancestry Asthma cases, 1,030 European ancestry Chronic obstructive pulmonary disease cases, 4,585 European ancestry controls	461 European ancestry Asthma cases, 118 European ancestry Chronic obstructive pulmonary disease cases, 656 European ancestry controls, 720 European, African American and Hispanic Asthma cases, 1,019 European, African American and Hispanic Chronic obstructive pulmonary disease cases, 19,173 European, African American and Hispanic controls, 1,106 Asthma cases, 1,806 Chronic obstructive pulmonary disease cases, 18,580 controls	13q14.2	GNG5P5	rs9534578-?		2E-7		1.06	[NR]	Illumina [1811026]	N
950	chr13	47898878	47898879	rs1417205	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	13q14.2	GNG5P5	rs1417205-A	0.95	8E-7		0.064	unit decrease	Illumina [~ 2400000] (imputed)	N
950	chr13	47899876	47899877	rs2039860	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.2	ESD	rs2039860-?	NR	9E-6	(S adenosylhomocysteine)	0.38154858	[0.21-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
950	chr13	47919494	47919495	rs7334370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs7334370-?	NR	6E-14				NR [~ 8900000] (imputed)	N
950	chr13	47950724	47950725	rs7999279	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	13q14.2	HTR2A, LINC00562	rs7999279-?		1E-6		1.42	[1.23-1.63]	Illumina [1444884]	N
950	chr13	47950724	47950725	rs7999279	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	13q14.2	HTR2A, LINC00562	rs7999279-?		3E-6		1.52	[1.27-1.81]	Illumina [1444884]	N
951	chr13	48079889	48079890	rs17070213	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.2	NR	rs17070213-C	0.01394	3E-8	(LDHB)	0.1387	NR unit increase	Illumina [1671387] (imputed)	N
951	chr13	48079889	48079890	rs17070213	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.2	NR	rs17070213-C	0.01394	3E-10	(LUM)	0.2767	NR unit increase	Illumina [1671387] (imputed)	N
951	chr13	48079889	48079890	rs17070213	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.2	NR	rs17070213-C	0.01394	2E-9	(DCN)	0.05874	NR unit increase	Illumina [1671387] (imputed)	N
951	chr13	48085525	48085526	rs17070253	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	13q14.2	LINC00562	rs17070253-C	0.06034	3E-6				Illumina [4404269] (imputed)	N
952	chr13	48118781	48118782	rs9534678	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	13q14.2	NR	rs9534678-A	NR	6E-9	(Cox proportional hazards regression model)	133.6	[25.62-696.59]	Illumina [810622]	N
952	chr13	48162557	48162558	rs2478333	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	13q14.2	intergenic	rs2478333-A	0.33	4E-8		0.17	[0.11-0.23] unit increase	Illumina [~ 318327]	N
952	chr13	48186635	48186636	rs1590594	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q14.2	NR	rs1590594-C	NR	3E-8	(GEE model)	1.1951	[0.77-1.62] unit increase	NR [NR] (imputed)	N
952	chr13	48198715	48198716	rs1575891	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	13q14.2	HTR2A	rs1575891-?	NR	6E-6	(additive)			Affymetrix [361034]	N
952	chr13	48225255	48225256	rs149207100	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.2	NR	rs149207100-A	0.0331	3E-8	(GATM)	1.82	NR unit increase	Illumina [1671387] (imputed)	N
953	chr13	48281046	48281047	rs7331824	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.2	NR	rs7331824-?	NR	2E-7		5.16	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
953	chr13	48287052	48287053	rs187463372	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	13q14.2	NR	rs187463372-?	NR	8E-6		0.4064	[0.22-0.59] unit decrease	Illumina [at least 560000] (imputed)	N
953	chr13	48341921	48341922	rs9534816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q14.2		rs9534816-G	NR	2E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
954	chr13	48369729	48369730	rs7999699	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	13q14.2	RPL27AP8, SUCLA2	rs7999699-?	0.38-0.47	3E-6	(Fruit)	1.32	[1.18-1.47]	Affymetrix, Illumina [> 2700000] (imputed)	N
954	chr13	48382344	48382345	rs7998721	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.2	NR	rs7998721-?	NR	3E-6		4.679	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
954	chr13	48387721	48387722	rs8001976	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	13q14.2	SUCLA2	rs8001976-T	0.44	3E-6		1.09	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
954	chr13	48436924	48436925	rs11620399	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q14.2	SUCLA2	rs11620399-T	0.04	5E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
954	chr13	48436924	48436925	rs11620399	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q14.2	SUCLA2	rs11620399-T	0.04	5E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
955	chr13	48505492	48505493	rs1041070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q14.2		rs1041070-?	NR	7E-12				NR [~ 8900000] (imputed)	N
955	chr13	48536665	48536666	rs117132048	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	13q14.2	SUCLA2	rs117132048-T	0.946678	3E-12	(succinylcarnitine (C4-DC))	0.354	[0.25-0.45] unit decrease	Illumina [13039987] (imputed)	N
955	chr13	48575586	48575587	rs2296573	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	13q14.2	NR	rs2296573-G	NR	2E-8		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
955	chr13	48575586	48575587	rs2296573	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	13q14.2	NR	rs2296573-G	NR	9E-10				Affymetrix, Illumina [NR] (imputed)	N
955	chr13	48605440	48605441	rs9567982	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	13q14.2	LINC00444, LINC00562, SUCLA2, SUCLA2-AS1, NUDT15, MED4, MED4-AS1, POLR2KP2	rs9567982-G	0.1375	3E-6		0.0394	NR unit increase	NR [NR] (imputed)	N
955	chr13	48619854	48619855	rs116855232	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced severe leukopenia in inflammatory bowel disease	72 Japanese ancestry cases, 1,148 Japanese ancestry controls	NA	13q14.2	NUDT15, SUCLA2, MED4	rs116855232-?	NR	1E-8				Affymetrix [> 5000000] (imputed)	N
955	chr13	48619854	48619855	rs116855232	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced severe alopecia in inflammatory bowel disease	41 Japanese ancestry cases, 1,179 Japanese ancestry controls	NA	13q14.2	NUDT15, SUCLA2, MED4	rs116855232-?	NR	1E-8				Affymetrix [> 5000000] (imputed)	N
955	chr13	48619854	48619855	rs116855232	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced leukopenia in inflammatory bowel disease	196 Japanese ancestry cases, 1,024 Japanese ancestry controls	NA	13q14.2	NUDT15, SUCLA2, MED4	rs116855232-?	NR	1E-33		5.8	[4.4-7.7]	Affymetrix [> 5000000] (imputed)	N
955	chr13	48619854	48619855	rs116855232	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced alopecia in inflammatory bowel disease	81 Japanese ancestry cases, 1,139 Japanese ancestry controls	NA	13q14.2	NUDT15, SUCLA2, MED4	rs116855232-?	NR	4E-29		10.4	[6.9-15.6]	Affymetrix [> 5000000] (imputed)	N
955	chr13	48619854	48619855	rs116855232	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced acute severe leukopenia in inflammatory bowel disease	43 Japanese ancestry cases, 1,172 Japanese ancestry controls	NA	13q14.2	MED4, NUDT15, SUCLA2	rs116855232-?	NR	1E-8				Affymetrix [> 5000000] (imputed)	N
955	chr13	48619854	48619855	rs116855232	27558924	Kim HS	2016-08-24	Gut	A coding variant in FTO confers susceptibility to thiopurine-induced leukopenia in East Asian patients with IBD.	Thiopurine-induced leukopenia in inflammatory bowel disease	113 Korean ancestry cases, 154 Korean ancestry controls	245 East Asian ancestry cases, 522 East Asian ancestry controls	13q14.2	NUDT15	rs116855232-C	0.05	1E-22		3.9	[2.90-5.30]	Affymetrix [505014]	N
955	chr13	48619854	48619855	rs116855232	25108385	Yang SK	2014-08-10	Nat Genet	A common missense variant in NUDT15 confers susceptibility to thiopurine-induced leukopenia.	Thiopurine-induced early leukopenia in Crohn's disease	33 Korean ancestry cases, 307 Korean ancestry controls	33 Korean ancestry cases, 325 Korean ancestry controls	13q14.2	NUDT15, SUCLA2, MED4	rs116855232-T	0.04	5E-94		35.63	[22.47-56.51]	Illumina [531416] (imputed)	N
956	chr13	48632271	48632272	rs9567987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q14.2		rs9567987-A	NR	4E-21		0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
956	chr13	48640748	48640749	rs2104480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	13q14.2	NR	rs2104480-G	NR	2E-13		0.0203	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr13	48640748	48640749	rs2104480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs2104480-G	NR	4E-18		0.0239	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
956	chr13	48640748	48640749	rs2104480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q14.2	NR	rs2104480-G	NR	7E-17		0.023	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr13	48640748	48640749	rs2104480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs2104480-G	NR	6E-18		0.0238	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr13	48640748	48640749	rs2104480	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	13q14.2	NR	rs2104480-C	0.29	3E-12		0.0139	[0.0099-0.0179] unit increase	NR [NR]	N
956	chr13	48654454	48654455	rs9534949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	13q14.2		rs9534949-G	NR	7E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
956	chr13	48654454	48654455	rs9534949	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	13q14.2	NUDT15, MED4-AS1, LINC00562	rs9534949-G	0.6165	5E-9		5.853	NR z score increase	Illumina [26237160] (imputed)	N
956	chr13	48658187	48658188	rs9534950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs9534950-C	0.678668	6E-10				Affymetrix, Illumina [24332387] (imputed)	N
956	chr13	48725848	48725849	rs11619475	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	13q14.2		rs11619475-T	0.396	5E-6		1.14	[1.07-1.21]	Illumina [7199488] (imputed)	N
957	chr13	48760170	48760171	rs1925746	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	13q14.2	ITM2B	rs1925746-A	0.274	4E-6		0.77	[0.689 - 0.86]	Illumina [5398302] (imputed)	N
957	chr13	48801875	48801876	rs9568025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs9568025-?	NR	1E-15				NR [~ 8900000] (imputed)	N
957	chr13	48824230	48824231	rs9526465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q14.2		rs9526465-C	NR	3E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
957	chr13	48824230	48824231	rs9526465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q14.2		rs9526465-C	NR	2E-10		0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
957	chr13	48849802	48849803	rs9535006	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	13q14.2	NR	rs9535006-A	0.25	7E-9		0.021	[0.013-0.029] z score decrease	Affymetrix [up to 10400000] (imputed)	N
957	chr13	48854549	48854550	rs34217484	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	13q14.2	LINC00441, RB1	rs34217484-A	0.264286	2E-7		0.018393	[0.011-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
957	chr13	48854549	48854550	rs34217484	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q14.2	LINC00441, RB1	rs34217484-A	0.26421	7E-11		0.0192	[0.013-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
957	chr13	48882362	48882363	rs2854355	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	13q14.2	RB1	rs2854355-G	0.26	2E-8		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
958	chr13	48898592	48898593	rs7983002	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Diastolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA		RB1	rs7983002-A	0.01	2E-7	(EA)	1.58	[0.99-2.17] unit increase	Illumina [up to 13042663] (imputed)	N
958	chr13	48923807	48923808	rs9535020	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Chronic kidney disease	658 European ancestry child cases, 1,347 European ancestry child controls	NA	13q14.2	RB1	rs9535020-G	0.13	4E-6		1.69	[1.35-2.10]	Illumina [~ 8300000] (imputed)	N
958	chr13	48976672	48976673	rs11839271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.2	LPAR6, RB1	rs11839271-T	0.699696	4E-11		0.015975589	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr13	48976672	48976673	rs11839271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.2	NR	rs11839271-T	0.698992	2E-14		0.015781	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
958	chr13	48976854	48976855	rs198612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.2		rs198612-G	NR	1E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
958	chr13	49016342	49016343	rs544475121	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	13q14.2	intergenic	rs544475121-AT	NR	5E-6	(AA)	0.561	unit increase	Illumina [at least 5086170] (imputed)	N
958	chr13	49020028	49020029	rs183816717	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q14.2	RB1	rs183816717-A	0.999	2E-6	(AA)	0.465	unit increase	Illumina [NR] (imputed)	N
959	chr13	49029603	49029604	rs185837131	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q14.2	RB1	rs185837131-T	0.999	2E-6	(AA)	0.453	unit increase	Illumina [NR] (imputed)	N
959	chr13	49056733	49056734	rs4151636	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	13q14.2	NR	rs4151636-G	0.0438058	4E-6		1.136	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
959	chr13	49085414	49085415	rs2148515	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	13q14.2		rs2148515-A	0.027	9E-6		0.119	[0.066-0.172] unit increase	Illumina [6361597] (imputed)	N
959	chr13	49146071	49146072	rs1359688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs1359688-A	0.27006	9E-12				Affymetrix, Illumina [23472807] (imputed)	N
959	chr13	49149870	49149871	rs187785117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q14.2	Intergenic	rs187785117-T	0.999	2E-6	(AA)	0.405	unit increase	Illumina [NR] (imputed)	N
960	chr13	49163179	49163180	rs193251247	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q14.2	Intergenic	rs193251247-A	0.999	2E-6	(AA)	0.4	unit increase	Illumina [NR] (imputed)	N
960	chr13	49193926	49193927	rs3945837	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	13q14.2	CYSLTR2, LINC00462	rs3945837-A	0.57	8E-6	(adjusted for severity)	1.25	[1.15-1.35]	Affymetrix, Illumina [~ 8500000] (imputed)	N
960	chr13	49232818	49232819	rs193182884	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q14.2	CYSLTR2	rs193182884-A	0.999	4E-6	(AA)	0.541	unit increase	Illumina [NR] (imputed)	N
960	chr13	49250996	49250997	rs1323555	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	13q14.2	CYSLTR2	rs1323555-?		2E-6		0.343	[NR] unit increase	Illumina [430487]	N
960	chr13	49254891	49254892	rs11843756	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	13q14.2	NR	rs11843756-G		3E-6		0.184	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
961	chr13	49286437	49286438	rs9595973	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	13q14.2	CYSLTR2	rs9595973-?		3E-6	(Dominant)	2.8	[1.80-4.30]	Illumina [5600610] (imputed)	N
961	chr13	49308306	49308307	rs4941629	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.2	RCBTB2	rs4941629-?	NR	5E-6	(DAG 36:1)	0.19065826	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
961	chr13	49321853	49321854	rs9316411	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	13q14.2		rs9316411-?	NR	2E-6	(overall)	1.37		Illumina [11595112] (imputed)	N
961	chr13	49367279	49367280	rs9596009	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	13q14.2	Intergenic	rs9596009-?	NR	3E-6		2.63	[1.75-3.95]	Illumina [8600000] (imputed)	N
961	chr13	49383311	49383329	rs369681417	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	13q14.2	LOC107984559	rs369681417-A	0.02	7E-7		0.31	[0.19-0.43] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
961	chr13	49401782	49401782	rs36019010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	13q14.2		rs36019010-CAG	NR	5E-9		0.0713	[0.047-0.095] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
961	chr13	49413467	49413468	rs1449587	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	13q14.2	NR	rs1449587-A	NR	1E-6			NR unit decrease	Illumina [at least 1198956] (imputed)	N
962	chr13	49431295	49431297	rs200147305	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	13q14.2	PSME2P2, FNDC3A	rs200147305-T	0.67	9E-6		1.34		Affymetrix [at least 730985] (imputed)	N
962	chr13	49441668	49441669	rs9535100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q14.2	NR	rs9535100-C	0.823326	7E-10		0.01788638	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
962	chr13	49453671	49453672	rs9562854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q14.2		rs9562854-?	NR	1E-10				NR [~ 8900000] (imputed)	N
962	chr13	49466930	49466931	rs1449572	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		13q14.2	NR	rs1449572-A	0.14	8E-6	(t4;14 vs. controls)	1.73	[1.36-2.21]	Illumina [414804] (imputed)	N
962	chr13	49476314	49476315	rs9568125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q14.2		rs9568125-?	NR	1E-12				NR [~ 8900000] (imputed)	N
962	chr13	49494886	49494887	rs80040116	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q14.2	Intergenic	rs80040116-?		2E-6		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
962	chr13	49494886	49494887	rs80040116	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q14.2	Intergenic	rs80040116-?		4E-6		1.17	[1.10-1.25]	Illumina [7645193] (imputed)	N
962	chr13	49513351	49513352	rs183078	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q14.2	FNDC3A	rs183078-A	0.597444	2E-10		0.0123941	[0.0086-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
962	chr13	49513351	49513352	rs183078	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q14.2	FNDC3A	rs183078-A	0.597474	1E-12		0.0143065	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
962	chr13	49521541	49521542	rs6561487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q14.2		rs6561487-G	NR	3E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
963	chr13	49578939	49578940	rs180991625	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	13q14.2	NR	rs180991625-?	NR	9E-6		0.2773	[0.16-0.4] unit decrease	Illumina [at least 560000] (imputed)	N
963	chr13	49595330	49595331	rs2026029	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	13q14.2	FNDC3A	rs2026029-?	NR	1E-7	(subset analysis)			Illumina [130052]	N
963	chr13	49612046	49612047	rs76555819	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q14.2	Intergenic	rs76555819-?		5E-6		1.19	[1.10-1.28]	Illumina [7645193] (imputed)	N
963	chr13	49645702	49645703	rs118112762	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	13q14.2	FNDC3A	rs118112762-?	NR	7E-6		3.25		Illumina [6778521] (imputed)	N
963	chr13	49648945	49648946	rs4942800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q14.2		rs4942800-?	NR	2E-8				NR [~ 8900000] (imputed)	N
964	chr13	49734237	49734238	rs548836718	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	13q14.2	FNDC3A	rs548836718-CG	0.9937	9E-6		0.4255	[0.24-0.61] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
964	chr13	49748279	49748280	rs77003779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q14.2	NR	rs77003779-G	NR	9E-35		0.0625	[0.053-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
964	chr13	49761076	49761077	rs78871791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs78871791-?	NR	9E-11				NR [~ 8900000] (imputed)	N
964	chr13	49783214	49783215	rs78036026	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q14.2	Intergenic	rs78036026-?		6E-6		1.19	[1.10-1.28]	Illumina [7645193] (imputed)	N
965	chr13	49836182	49836183	rs9535179	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	13q14.2	Intergenic	rs9535179-?		1E-6		2.584202	[NR] unit decrease	Illumina [575353]	N
965	chr13	49840890	49840891	rs73186813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q14.2		rs73186813-?	NR	1E-12				NR [~ 8900000] (imputed)	N
965	chr13	49848832	49848833	rs9596077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q14.2		rs9596077-?	NR	6E-8				NR [~ 8900000] (imputed)	N
965	chr13	49905671	49905672	rs7992766	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	13q14.2		rs7992766-A	0.75	1E-7		1.09	[1.05-1.14]	Affymetrix, Illumina [NR] (imputed)	N
965	chr13	49911871	49911872	rs531530319	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CAB39L	rs531530319-?	NR	2E-9	(female)	0.447918	[NR] unit increase	Affymetrix [NR] (imputed)	N
965	chr13	49918174	49918175	rs35214871	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q14.2	CAB39L	rs35214871-T	0.1485	8E-15		0.7172	[0.54-0.9] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
965	chr13	49927731	49927732	rs9568188	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	13q14.2	CAB39L	rs9568188-T	0.7397	1E-8		0.0617	[0.041-0.083] unit increase	NR [7784415] (imputed)	N
965	chr13	49927731	49927732	rs9568188	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	13q14.2	NR	rs9568188-T	NR	4E-7		1.0683761	[1.04-1.09]	Illumina [11933700] (imputed)	N
965	chr13	49935756	49935757	rs7984177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs7984177-?	NR	1E-9				NR [~ 8900000] (imputed)	N
965	chr13	49937011	49937012	rs146932748	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	13q14.2	CAB39L	rs146932748-?	NR	2E-7	(AA)			Illumina [NR] (imputed)	N
966	chr13	49967823	49967824	rs9596092	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.2	CAB39L	rs9596092-A	0.9139	8E-12		0.0242	[0.017-0.031] unit increase	Affymetrix [18391927] (imputed)	N
966	chr13	49990524	49990525	rs61960129	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	13q14.2	NR	rs61960129-?	NR	3E-7		0.1797	[0.11-0.25] unit decrease	Illumina [at least 560000] (imputed)	N
966	chr13	50012406	50012407	rs9535244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q14.2		rs9535244-?	NR	1E-8				NR [~ 8900000] (imputed)	N
966	chr13	50023135	50023136	rs79754229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q14.2	NR	rs79754229-A	NR	2E-13		0.0511	[0.038-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr13	50044980	50044981	rs7994566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q14.2	SETDB2	rs7994566-G	0.641439	2E-10		0.014938612	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
966	chr13	50048401	50048401	rs11386165	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q14.2	NR	rs11386165-C	0.898916	5E-8		0.0177064	[0.011-0.024] unit decrease	Affymetrix [15000001]	N
966	chr13	50057096	50057097	rs2057413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q14.2	NR	rs2057413-A	0.699325	2E-11		0.013333	[0.0095-0.0172] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
966	chr13	50060468	50060469	rs1555530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs1555530-A	0.711547	2E-11				Affymetrix, Illumina [24246363] (imputed)	N
967	chr13	50072428	50072429	rs77929895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs77929895-?	NR	8E-19				NR [~ 8900000] (imputed)	N
967	chr13	50072428	50072429	rs77929895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.2		rs77929895-?	NR	7E-12				NR [~ 8900000] (imputed)	N
967	chr13	50074152	50074153	rs756877701	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.2	PHF11, SETDB2-PHF11	rs756877701-T	NR	2E-6		1.223	[0.73-1.72] unit increase	Illumina [212505] (imputed)	N
967	chr13	50080846	50080847	rs2031532	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	13q14.2	PHF11	rs2031532-?	NR	5E-6	(recessive)			Affymetrix [361034]	N
967	chr13	50095681	50095682	rs17381960	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	13q14.2	NR	rs17381960-?	NR	3E-6		0.1508	[0.087-0.214] unit increase	Illumina [at least 560000] (imputed)	N
967	chr13	50095681	50095682	rs17381960	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	13q14.2	PHF11, RCBTB1	rs17381960-?	NR	2E-6		0.778	[0.46-1.1] unit decrease	Illumina [6590000] (imputed)	N
967	chr13	50100089	50100090	rs7322908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs7322908-A	0.477649	5E-10				Affymetrix, Illumina [24588908] (imputed)	N
967	chr13	50100089	50100090	rs7322908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q14.2	NR	rs7322908-A	0.48117	4E-11		0.012138	[0.0085-0.0157] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
967	chr13	50109570	50109571	rs17073103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.2	NR	rs17073103-T	0.01394	1E-11	(RNASE2)	0.04205	NR unit increase	Illumina [1671387] (imputed)	N
967	chr13	50113449	50113450	rs7326825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	13q14.2		rs7326825-G	0.293	2E-12				Affymetrix [10369434] (imputed)	N
967	chr13	50113449	50113450	rs7326825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q14.2	RCBTB1	rs7326825-A	0.706535	2E-22		0.023676965	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
967	chr13	50113449	50113450	rs7326825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q14.2	RCBTB1	rs7326825-A	0.706518	4E-21		0.022972297	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
967	chr13	50113449	50113450	rs7326825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs7326825-A	0.685511	4E-23				Affymetrix, Illumina [24649327] (imputed)	N
967	chr13	50113449	50113450	rs7326825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q14.2	NR	rs7326825-A	0.703613	2E-24		0.020659	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
967	chr13	50113449	50113450	rs7326825	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q14.2	NR	rs7326825-G		9E-13		0.08	[0.06-0.1] unit increase	NR [NR]	N
967	chr13	50121510	50121511	rs1570884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q14.2		rs1570884-G	NR	3E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
967	chr13	50121510	50121511	rs1570884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.70953	1E-10		0.015758235	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr13	50121510	50121511	rs1570884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.7105	5E-10		0.02461738	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50121510	50121511	rs1570884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.7105	2E-9		0.02362587	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50121510	50121511	rs1570884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.7105	1E-9		0.02390199	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50121510	50121511	rs1570884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.7105	8E-11		0.02578751	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50121510	50121511	rs1570884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	13q14.2	RCBTB1	rs1570884-G	0.7105	7E-10		0.02440508	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50122680	50122681	rs7996207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs7996207-A	0.658978	9E-20				Affymetrix, Illumina [23114412] (imputed)	N
967	chr13	50122680	50122681	rs7996207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q14.2	NR	rs7996207-A	0.693584	2E-20		0.019398	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
967	chr13	50122680	50122681	rs7996207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs7996207-A	0.656683	3E-23				Affymetrix, Illumina [23467995] (imputed)	N
967	chr13	50122680	50122681	rs7996207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q14.2	NR	rs7996207-A	0.693495	8E-24		0.020486	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
967	chr13	50122680	50122681	rs7996207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q14.2		rs7996207-?	NR	7E-15				NR [~ 8900000] (imputed)	N
967	chr13	50123270	50123271	rs66645127	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q14.2	RCBTB1	rs66645127-T	0.6961	6E-12		0.02812997	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr13	50123316	50123317	rs7333969	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	13q14.2	NR	rs7333969-T	0.6836	2E-10		0.0481	[0.033-0.063] unit decrease	Illumina [~ 10600000] (imputed)	N
967	chr13	50123621	50123622	rs3751384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q14.2	RCBTB1	rs3751384-G	0.303932	1E-20		0.022374585	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
967	chr13	50137362	50137363	rs9535263	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q14.2	SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3	rs9535263-?		1E-36				Affymetrix, Illumina [NR] (imputed)	N
967	chr13	50142020	50142021	rs61961401	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	13q14.2		rs61961401-T	NR	8E-8	(additive)	1.121	[0.712-1.53] unit increase	Illumina [5894709] (imputed)	N
967	chr13	50159164	50159165	rs1359543	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q14.2	RCBTB1	rs1359543-A	0.5794	3E-10		6.301	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
967	chr13	50177452	50177453	rs76725306	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	13q14.2	RCBTB1, ARL11	rs76725306-A	NR	4E-8		1.16	[1.11-1.21]	Illumina [NR] (imputed)	N
967	chr13	50177452	50177453	rs76725306	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	13q14.2	RCBTB1, ARL11	rs76725306-A	NR	1E-6		1.15	[1.09-1.21]	Illumina [5719137] (imputed)	N
967	chr13	50179453	50179454	rs7322886	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	13q14.2	RCBTB1	rs7322886-T	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
967	chr13	50184979	50184980	rs9591287	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.2	NR	rs9591287-?	NR	2E-7		5.175	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
967	chr13	50185203	50185204	rs9568281	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		13q14.2	ARL11	rs9568281-?		3E-7	(Cluxel size)			Illumina [208975]	N
967	chr13	50195620	50195621	rs191550802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	RP11-432M24.4	rs191550802-A	NR	1E-13		0.0804436	[0.059-0.102] unit increase	Affymetrix [321016] (imputed)	N
967	chr13	50196040	50196041	rs148899725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	RP11-432M24.4	rs148899725-C	NR	2E-11		0.0787834	[0.056-0.102] unit increase	Affymetrix [323123] (imputed)	N
967	chr13	50196538	50196539	rs4942856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q14.2		rs4942856-A	NR	4E-9		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
967	chr13	50198157	50198158	rs4942859	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q14.2	intergenic	rs4942859-A	0.5421	3E-8		0.0133	[0.0086-0.018] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
968	chr13	50233691	50233692	rs9568298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	EBPL	rs9568298-G	NR	1E-14		0.0385174	[0.029-0.048] unit increase	Affymetrix [321016] (imputed)	N
968	chr13	50260001	50260002	rs2008019	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.2	NR	rs2008019-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
968	chr13	50262585	50262586	rs535598832	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.2	EBPL	rs535598832-A	NR	1E-6		1.224	[0.73-1.72] unit increase	Illumina [212505] (imputed)	N
968	chr13	50265237	50265238	rs9568308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	EBPL	rs9568308-T	NR	2E-12		0.0376041	[0.027-0.048] unit increase	Affymetrix [323123] (imputed)	N
968	chr13	50287207	50287208	rs35526541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q14.2	KPNA3	rs35526541-A	0.26226	1E-17		0.021853149	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
968	chr13	50287207	50287208	rs35526541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q14.2	KPNA3	rs35526541-A	0.262256	5E-16		0.0207061	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
968	chr13	50291841	50291842	rs9535307	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.2	KPNA3	rs9535307-A	0.082	8E-6	(Fat mass change )	0.03	[NR] kg/y increase	Illumina [899892]	N
968	chr13	50306220	50306221	rs3736830	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	13q14.2	KPNA3	rs3736830-?	NR	9E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
968	chr13	50306220	50306221	rs3736830	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	13q14.2	KPNA3	rs3736830-G	0.157	9E-8		0.18	[0.11-0.25] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
969	chr13	50338155	50338156	rs56255891	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.2	NR	rs56255891-?	NR	6E-6		4.53	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
969	chr13	50340862	50340863	rs9535333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q14.2		rs9535333-?	NR	1E-15				NR [~ 8900000] (imputed)	N
969	chr13	50349897	50349898	rs78844280	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	13q14.2	NR	rs78844280-A	0.02206	2E-8		0.004317	[0.0028-0.0058] unit decrease	Affymetrix [NR] (imputed)	N
969	chr13	50349897	50349898	rs78844280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs78844280-A	NR	2E-10		0.0525	[0.036-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
969	chr13	50349897	50349898	rs78844280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs78844280-A	NR	2E-11		0.0549	[0.039-0.071] unit increase	Affymetrix [9000000] (imputed)	N
969	chr13	50396705	50396706	rs141604861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs141604861-?	NR	7E-12				NR [~ 8900000] (imputed)	N
969	chr13	50403123	50403124	rs4941659	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine/thyroxine ratio	623 Croatian ancestry individuals	NA	13q14.2	KPNA3	rs4941659-G	NR	1E-7		0.3	[0.18-0.42] unit increase	NR [8752746] (imputed)	N
969	chr13	50413547	50413548	rs79397170	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs79397170-A	0.02044	5E-9		0.5096	[0.34-0.68] unit increase	Illumina [18238287] (imputed)	N
969	chr13	50431128	50431129	rs9535379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	RNY4P30	rs9535379-T	NR	2E-8		0.0190549	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
969	chr13	50431986	50431987	rs4942883	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q14.2	NR	rs4942883-C	0.6053	9E-9		0.0306	[0.02-0.041] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
969	chr13	50432051	50432052	rs55813792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q14.2		rs55813792-T	0.202199	9E-17		0.02311647	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
969	chr13	50432051	50432052	rs55813792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q14.2		rs55813792-T	0.202193	1E-16		0.02311891	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
969	chr13	50432186	50432187	rs4942885	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q14.2	NR	rs4942885-C	0.425	8E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
969	chr13	50446540	50446541	rs4942889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.2		rs4942889-?	NR	3E-14				NR [~ 8900000] (imputed)	N
970	chr13	50465820	50465821	rs7331776	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.2	NR	rs7331776-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
970	chr13	50465820	50465821	rs7331776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q14.2		rs7331776-?	NR	6E-9				NR [~ 8900000] (imputed)	N
970	chr13	50467337	50467338	rs7338963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs7338963-?	NR	9E-36				NR [~ 8900000] (imputed)	N
970	chr13	50468729	50468730	rs9591310	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.2	RNY4P30	rs9591310-T	0.1994	1E-29		0.0249	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
970	chr13	50518052	50518052	rs5803487	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.2		rs5803487-?	NR	1E-14		0.0188832	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
970	chr13	50530794	50530795	rs56273425	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.2	DLEU2	rs56273425-A	0.0255	4E-10		0.0367	[0.025-0.048] unit decrease	Affymetrix [18391927] (imputed)	N
970	chr13	50536359	50536360	rs2472591	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	13q14.2	SPRYD7, DLEU2	rs2472591-T	0.206	4E-8		0.05	[0.026-0.074] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
970	chr13	50548294	50548295	rs397851545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q14.2		rs397851545-C	0.227773	5E-15		0.021012323	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
970	chr13	50548294	50548295	rs397851545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.2		rs397851545-C	0.22779	2E-27		0.02927954	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
970	chr13	50548305	50548306	rs35647869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.2		rs35647869-C	NR	1E-18		0.0253	[0.02-0.031] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
970	chr13	50548414	50548415	rs4942901	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.2	DLEU2	rs4942901-C	0.74846	1E-11		0.0148395	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
970	chr13	50563446	50563447	rs9596219	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q14.2	TRIM13	rs9596219-T	0.25	1E-9		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
970	chr13	50564489	50564490	rs12583637	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q14.2	TRIM13	rs12583637-A	0.1326	6E-14		0.1671	[0.12-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
970	chr13	50565104	50565106	rs201736780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q14.2		rs201736780-A	NR	3E-19		0.0638	[0.05-0.078] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
970	chr13	50565104	50565106	rs201736780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	13q14.2	NR	rs201736780-A	NR	4E-9		0.052	[0.035-0.069] unit increase	Affymetrix [9000000] (imputed)	N
970	chr13	50576516	50576516	rs768863363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	TRIM13	rs768863363-CTG	NR	1E-8		0.018477	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
970	chr13	50581921	50581922	rs35937141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.2	TRIM13	rs35937141-A	NR	2E-9		0.0251532	[0.017-0.033] unit increase	Affymetrix [319769] (imputed)	N
970	chr13	50581921	50581922	rs35937141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.2	TRIM13	rs35937141-A	NR	2E-9		0.0249463	[0.017-0.033] unit increase	Affymetrix [319769] (imputed)	N
970	chr13	50581921	50581922	rs35937141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	TRIM13	rs35937141-A	NR	2E-11		0.027899	[0.02-0.036] unit decrease	Affymetrix [321016] (imputed)	N
970	chr13	50592458	50592459	rs150929481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	13q14.2		rs150929481-C	0.101471	9E-16		0.039559	[0.03-0.049] unit increase	Illumina [13479924] (imputed)	N
970	chr13	50592458	50592459	rs150929481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q14.2		rs150929481-C	NR	3E-9		0.0343	[0.023-0.046] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
970	chr13	50592458	50592459	rs150929481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	13q14.2		rs150929481-C	0.101661	3E-9		0.0343426	[0.023-0.046] unit increase	Illumina [13479178] (imputed)	N
971	chr13	50609237	50609238	rs9596226	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.2	DLEU2	rs9596226-T	0.6891	4E-7		0.0357	[0.022-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
971	chr13	50609482	50609483	rs150493080	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.2	DLEU2	rs150493080-T	NR	4E-8		0.0352607	[0.023-0.048] unit increase	Affymetrix [319769] (imputed)	N
971	chr13	50609482	50609483	rs150493080	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	13q14.2	DLEU2	rs150493080-T	NR	2E-8		0.0361683	[0.023-0.049] unit increase	Affymetrix [321169] (imputed)	N
971	chr13	50609482	50609483	rs150493080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.2	NR	rs150493080-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
971	chr13	50629664	50629665	rs749307626	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.2	DLEU2	rs749307626-C	NR	1E-6		1.225	[0.73-1.72] unit increase	Illumina [212505] (imputed)	N
971	chr13	50639586	50639586	rs36179992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q14.2	NR	rs36179992-GTA	0.508716	4E-21		0.00807912	[0.0064-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
971	chr13	50639586	50639586	rs36179992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q14.2	NR	rs36179992-GTA	0.508716	1E-13		0.00727156	[0.0054-0.0092] unit increase	Affymetrix [16582965] (imputed)	N
971	chr13	50645163	50645164	rs9316484	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	13q14.2		rs9316484-T	0.78	4E-11				Affymetrix [10369434] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	6E-11		0.5689	[0.4-0.74] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	1E-10		0.5713	[0.4-0.74] unit increase	Illumina [18238311] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	2E-8		0.4927	[0.32-0.67] unit decrease	Illumina [18238311] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	3E-9		0.5149	[0.35-0.68] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	6E-9		0.511	[0.34-0.68] unit increase	Illumina [18238311] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	3E-8		0.4756	[0.31-0.64] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	7E-10		0.5392	[0.37-0.71] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	2E-9		0.536	[0.36-0.71] unit increase	Illumina [18238311] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	5E-8		0.4796	[0.31-0.65] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	6E-11		0.5657	[0.4-0.73] unit increase	Illumina [18238287] (imputed)	N
971	chr13	50649997	50649998	rs139370814	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q14.2		rs139370814-T	0.02064	3E-10		0.554	[0.38-0.73] unit increase	Illumina [18238311] (imputed)	N
971	chr13	50652455	50652456	rs1523178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.2	NR	rs1523178-C	0.214521	2E-26				Affymetrix, Illumina [23472807] (imputed)	N
971	chr13	50652455	50652456	rs1523178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q14.2	NR	rs1523178-C	0.22113	4E-29		0.025694	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
971	chr13	50655088	50655089	rs763268500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.2	DLEU2	rs763268500-A	0.00239400000000001	1E-10		0.15733603	[0.11-0.21] unit increase	Affymetrix [93095623] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	13q14.2	DLEU2	rs41284816-?	NR	9E-9		0.056	[0.039-0.073] unit decrease	Affymetrix [5701386] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	13q14.2	NR	rs41284816-T	0.019113000000000047	2E-8		0.0260423	[0.017-0.035] unit increase	Affymetrix [16578495] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q14.2	NR	rs41284816-T	0.019257999999999997	2E-25		0.0305	[0.024-0.037] unit increase	Affymetrix [16582909] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	13q14.2	NR	rs41284816-T	0.019019000000000008	6E-9		0.0220687	[0.014-0.031] unit increase	Affymetrix [16582621] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q14.2	NR	rs41284816-T	0.019257999999999997	5E-20		0.0299093	[0.023-0.037] unit increase	Affymetrix [16582965] (imputed)	N
971	chr13	50655988	50655989	rs41284816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	13q14.2	NR	rs41284816-T	0.019019000000000008	2E-6		0.0196473	[0.011-0.029] unit increase	Affymetrix [16582614] (imputed)	N
971	chr13	50655988	50655989	rs41284816	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	13q14.2	DLEU2	rs41284816-T	0.0262	4E-13		0.0078	[0.0054-0.0102] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
971	chr13	50655988	50655989	rs41284816	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	13q14.2	DLEU2	rs41284816-T	0.0263	3E-13		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
971	chr13	50655988	50655989	rs41284816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs41284816-?	NR	9E-160				NR [~ 8900000] (imputed)	N
971	chr13	50656581	50656582	rs2066575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	DLEU2, DLEU1	rs2066575-A	NR	9E-10		0.0199347	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
971	chr13	50666073	50666074	rs12864658	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	13q14.2	NR	rs12864658-T	0.05096400000000001	2E-12		0.0187243	[0.013-0.024] unit increase	Affymetrix [16585854] (imputed)	N
971	chr13	50666073	50666074	rs12864658	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	13q14.2	NR	rs12864658-T	0.05096400000000001	3E-6		0.0153662	[0.009-0.0217] unit increase	Affymetrix [16585866] (imputed)	N
971	chr13	50668479	50668480	rs9526636	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q14.2		rs9526636-G	0.78	3E-10				Affymetrix [10369434] (imputed)	N
971	chr13	50669172	50669173	rs75823898	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	13q14.2	DLEU1, DLEU2	rs75823898-A	0.027	5E-21	(AA)	0.203	[0.16-0.25] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
971	chr13	50669172	50669173	rs75823898	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	13q14.2	DLEU1, DLEU2	rs75823898-A	0.027	6E-18	(AA)	0.226	[0.18-0.28] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
971	chr13	50669172	50669173	rs75823898	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	13q14.2	DLEU1, DLEU2	rs75823898-A	0.026	3E-6	(AA)	0.167	[0.096-0.238] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
971	chr13	50670225	50670226	rs790935	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.2	NR	rs790935-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr13	50675565	50675565	rs71082144	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q14.2	NR	rs71082144-TTA	0.370494	4E-9		0.0410878	[0.027-0.055] unit increase	Affymetrix [17914406] (imputed)	N
971	chr13	50675566	50675566	rs35959412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q14.2		rs35959412-TTA	NR	5E-12		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
971	chr13	50701189	50701190	rs2066590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.2	DLEU1	rs2066590-A	0.220137	3E-15		0.02113629	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
971	chr13	50701189	50701190	rs2066590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.2	DLEU1	rs2066590-A	0.220138	5E-9		0.015675008	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
971	chr13	50701189	50701190	rs2066590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.2		rs2066590-?	NR	4E-11				NR [~ 8900000] (imputed)	N
971	chr13	50707086	50707087	rs2812208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	13q14.2		rs2812208-G	0.979332	3E-8		0.0755774	[0.049-0.102] unit decrease	NR [11722792] (imputed)	N
971	chr13	50707086	50707087	rs2812208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	13q14.2		rs2812208-C	NR	2E-10		0.0515	[0.036-0.067] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
971	chr13	50707086	50707087	rs2812208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q14.2		rs2812208-C	NR	5E-11		0.051	[0.036-0.066] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
971	chr13	50707086	50707087	rs2812208	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q14.2	DLEU1	rs2812208-G	0.979111	2E-12		0.0488932	[0.035-0.063] unit increase	Affymetrix [NR] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q14.2	DLEU1	rs2812208-C	0.0212	2E-14		0.0623	[0.046-0.078] unit increase	Affymetrix [19819130] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	13q14.2	DLEU1	rs2812208-C	0.0212	5E-14		0.0612	[0.045-0.077] unit increase	Affymetrix [19819130] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q14.2		rs2812208-?	NR	6E-15				NR [~ 8900000] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q14.2	NR	rs2812208-?	NR	4E-12	(female)	0.58044	[0.42-0.74] unit increase	Affymetrix [7794483] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q14.2	NR	rs2812208-?	NR	1E-34		0.93644	[0.79-1.09] unit increase	Affymetrix [7794483] (imputed)	N
971	chr13	50707086	50707087	rs2812208	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q14.2	NR	rs2812208-?	NR	1E-23	(male)	1.2054	[0.97-1.44] unit increase	Affymetrix [7794483] (imputed)	N
971	chr13	50707086	50707087	rs2812208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q14.2	NR	rs2812208-G	NR	3E-8		0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
971	chr13	50707086	50707087	rs2812208	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q14.2	NR	rs2812208-G	0.973	3E-8	(EA)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
971	chr13	50707086	50707087	rs2812208	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.2	DLEU1	rs2812208-C	0.0255	1E-10		0.1383	[0.096-0.18] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
971	chr13	50708903	50708904	rs2066591	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.2	NR	rs2066591-?	NR	2E-7		5.227	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
971	chr13	50718467	50718468	rs2687950	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	13q14.2	KCNRG	rs2687950-T	0.254	9E-27		0.036	[0.03-0.042] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
971	chr13	50722894	50722895	rs1326122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	13q14.2	NR	rs1326122-A	NR	1E-9		0.0533	[0.036-0.071] unit increase	Affymetrix [9000000] (imputed)	N
971	chr13	50722894	50722895	rs1326122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs1326122-A	NR	3E-17		0.0707	[0.054-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr13	50722894	50722895	rs1326122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.2	NR	rs1326122-A	NR	4E-18		0.073	[0.057-0.089] unit increase	Affymetrix [9000000] (imputed)	N
971	chr13	50722894	50722895	rs1326122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	13q14.2	NR	rs1326122-A	NR	9E-11		0.0545	[0.038-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr13	50722894	50722895	rs1326122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.2	NR	rs1326122-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
972	chr13	50726475	50726475	rs2066596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q14.2	DLEU1	rs2066596-CT	0.449019	1E-12		0.015820185	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
972	chr13	50726475	50726475	rs2066596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q14.2	DLEU1	rs2066596-CT	0.448984	3E-16		0.018212302	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
972	chr13	50730861	50730862	rs2812223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	DLEU1	rs2812223-T	NR	5E-15		0.0491098	[0.037-0.061] unit decrease	Affymetrix [321016] (imputed)	N
972	chr13	50731366	50731367	rs41308558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs41308558-?	NR	4E-17				NR [~ 8900000] (imputed)	N
972	chr13	50732423	50732424	rs74788384	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.2	DLEU1	rs74788384-?	NR	3E-12	(AA)	0.2255805	[0.16-0.29] unit increase	Illumina [34656550] (imputed)	N
972	chr13	50732423	50732424	rs74788384	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.2	DLEU1	rs74788384-?	NR	1E-11		0.195	[0.14-0.25] unit increase	Illumina [34656550] (imputed)	N
972	chr13	50750875	50750876	rs1149833	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	13q14.2	NR	rs1149833-?	NR	5E-7		1.338688	[1.19-1.5]	Affymetrix, Illumina [6717712] (imputed)	N
972	chr13	50753403	50753404	rs1568672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs1568672-A	NR	2E-12		0.0292406	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50753403	50753404	rs1568672	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.2	DLEU1	rs1568672-A	0.1669	4E-12		0.0602	[0.043-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
972	chr13	50754251	50754252	rs2066627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs2066627-T	NR	6E-13		0.0223321	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50754746	50754746	rs560757392	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		DLEU1	rs560757392-?	NR	3E-11	(female)	0.482226	[NR] unit increase	Affymetrix [NR] (imputed)	N
972	chr13	50760124	50760125	rs182234180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q14.2	DLEU1	rs182234180-T	0.03006	1E-9		0.04010748	[0.027-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr13	50760124	50760125	rs182234180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.2	DLEU1	rs182234180-T	0.030056	3E-18		0.057717808	[0.045-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr13	50764481	50764482	rs2066634	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	13q14.2		rs2066634-A	0.529	1E-8				Affymetrix [10369434] (imputed)	N
972	chr13	50764621	50764621	rs386379169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q14.2	DLEU1	rs386379169-CTT	0.336257	4E-14		0.018122185	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr13	50771234	50771235	rs2703087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.2	DLEU1	rs2703087-A	NR	1E-9		0.0440122	[0.03-0.058] unit increase	Affymetrix [321016] (imputed)	N
972	chr13	50771234	50771235	rs2703087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs2703087-A	NR	7E-22		0.0757447	[0.06-0.091] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	9E-17	(38 ms)	0.046006	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	9E-13	(42 ms)	0.0398254	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	6E-17	(16 ms)	0.0466726	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	5E-9	(46 ms)	0.0325416	[0.022-0.043] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	4E-17	(6 ms)	0.0463035	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	4E-16	(-6 ms)	0.0440788	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	4E-15	(-4 ms)	0.0424159	[0.032-0.053] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	3E-19	(12 ms)	0.0495536	[0.039-0.06] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	3E-15	(-12 ms)	0.0433692	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	3E-13	(0 ms)	0.0405861	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-19	(34 ms)	0.0496641	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-18	(8 ms)	0.048213	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-18	(36 ms)	0.0485536	[0.038-0.059] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-18	(10 ms)	0.0487279	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-17	(28 ms)	0.0471363	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-16	(-8 ms)	0.045041	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-14	(2 ms)	0.0416023	[0.031-0.052] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-13	(-2 ms)	0.0408416	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	2E-11	(44 ms)	0.0378889	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	1E-19	(32 ms)	0.0502577	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	1E-18	(30 ms)	0.0492982	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	1E-18	(14 ms)	0.049198	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	1E-16	(-10 ms)	0.0451242	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50784734	50784735	rs1965800	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q14.2	DLEU1	rs1965800-C	0.520835	1E-14	(40 ms)	0.0425129	[0.032-0.053] unit increase	Affymetrix [10000000] (imputed)	N
972	chr13	50787555	50787556	rs2066650	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	13q14.2	DLEU1	rs2066650-A	0.3202	3E-6		0.0403	[0.023-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
972	chr13	50794227	50794228	rs74899623	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	13q14.2	NR	rs74899623-G		3E-8		1.17		NR [8016731] (imputed)	N
972	chr13	50794756	50794756	rs759369576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs759369576-T	NR	1E-14		0.025639	[0.019-0.032] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50798729	50798730	rs2580188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs2580188-C	NR	2E-8		0.019438	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50807920	50807921	rs9596264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9596264-A	NR	4E-9		0.0498055	[0.033-0.066] unit decrease	Affymetrix [323858] (imputed)	N
972	chr13	50807920	50807921	rs9596264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9596264-A	NR	2E-9		0.0504803	[0.034-0.067] unit decrease	Affymetrix [127266] (imputed)	N
972	chr13	50808876	50808877	rs3116590	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	13q14.2	NR	rs3116590-G	0.2145	1E-8		1.042	[1.028-1.056]	Affymetrix [15688218] (imputed)	N
972	chr13	50808876	50808877	rs3116590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q14.2		rs3116590-?	NR	3E-8				NR [~ 8900000] (imputed)	N
972	chr13	50811154	50811155	rs9562955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q14.2		rs9562955-?	NR	1E-8				NR [~ 8900000] (imputed)	N
972	chr13	50811219	50811220	rs9591325	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	13q14.2		rs9591325-C	NR	2E-19		0.451884	[0.35-0.55] unit decrease	NR [5054572] (imputed)	N
972	chr13	50811219	50811220	rs9591325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9591325-C	NR	2E-11		0.041934	[0.03-0.054] unit decrease	Affymetrix [323858] (imputed)	N
972	chr13	50811219	50811220	rs9591325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9591325-C	NR	1E-11		0.0425371	[0.03-0.055] unit decrease	Affymetrix [127266] (imputed)	N
972	chr13	50811219	50811220	rs9591325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9591325-C	NR	6E-9		0.037264	[0.025-0.05] unit increase	Affymetrix [323858] (imputed)	N
972	chr13	50811219	50811220	rs9591325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs9591325-C	NR	2E-8		0.0344041	[0.022-0.046] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50811219	50811220	rs9591325	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	13q14.2	NR	rs9591325-T	NR	2E-10		1.14	NR	NR [8016731] (imputed)	N
972	chr13	50811219	50811220	rs9591325	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	13q14.2	DLEU1	rs9591325-T	NR	1E-19		1.2276	NR	Affymetrix, Illumina [8278136] (imputed)	N
972	chr13	50811219	50811220	rs9591325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	13q14.2		rs9591325-?	NR	1E-10				NR [~ 8900000] (imputed)	N
972	chr13	50811219	50811220	rs9591325	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	13q14.2	DLEU1	rs9591325--T	0.94	1E-10		1.63	NR	Illumina [1143634] (imputed)	N
972	chr13	50811672	50811673	rs9526646	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	13q14.2	NR	rs9526646-C	0.232635	5E-9		0.0683585	[0.045-0.091] unit decrease	Affymetrix [21375087] (imputed)	N
972	chr13	50811672	50811673	rs9526646	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q14.2	NR	rs9526646-C	0.231396	4E-9		0.0459496	[0.03-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
972	chr13	50812981	50812982	rs806293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	13q14.2		rs806293-A	0.722583	2E-8		0.0195293	[0.013-0.026] unit decrease	Illumina [13479135] (imputed)	N
972	chr13	50812981	50812982	rs806293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	13q14.2		rs806293-A	0.722876	2E-11		0.0230369	[0.016-0.03] unit decrease	Illumina [13478948] (imputed)	N
972	chr13	50812981	50812982	rs806293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	13q14.2		rs806293-A	0.722525	4E-12		0.0241793	[0.017-0.031] unit decrease	Illumina [13478961] (imputed)	N
972	chr13	50812981	50812982	rs806293	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	13q14.2	DLEU1	rs806293-?	NR	2E-10		0.03023	[0.021-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
972	chr13	50812981	50812982	rs806293	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	13q14.2	DLEU1	rs806293-?	NR	5E-10		0.02937	[0.02-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
972	chr13	50817825	50817826	rs2812197	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	13q14.2	DLEU1	rs2812197-?	NR	3E-10		1.1494253	[1.1-1.2]	Illumina [at least 8143088] (imputed)	N
972	chr13	50820237	50820238	rs9596267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q14.2		rs9596267-T	NR	8E-9		0.0264	[0.017-0.035] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
972	chr13	50822362	50822363	rs2762049	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	13q14.2	NR	rs2762049-C	0.3914	9E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
972	chr13	50822362	50822363	rs2762049	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	13q14.2	KCNRG	rs2762049-?	0.61	2E-15		0.021	[0.015-0.027] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
972	chr13	50826238	50826239	rs11618126	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	13q14.2	NR	rs11618126-G		1E-6		0.8908	[0.52-1.27] SD units decrease	NR [10700000] (imputed)	N
972	chr13	50830001	50830002	rs2762060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q14.2		rs2762060-A	NR	3E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
972	chr13	50830001	50830002	rs2762060	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	13q14.2		rs2762060-G	0.54	1E-13				Affymetrix [10369434] (imputed)	N
972	chr13	50830001	50830002	rs2762060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q14.2		rs2762060-?	NR	2E-15				NR [~ 8900000] (imputed)	N
972	chr13	50835714	50835715	rs2762051	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	13q14.2	intergenic	rs2762051-A	0.18	7E-7		1.13	[1.08-1.18]	Illumina [292387]	N
972	chr13	50840656	50840657	rs806319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	13q14.2	NR	rs806319-C	0.287955	1E-11		0.027712	[0.02-0.036] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
972	chr13	50840656	50840657	rs806319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	13q14.2	NR	rs806319-C	0.289592	3E-12		0.029048	[0.021-0.037] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
972	chr13	50841322	50841323	rs806321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.2	DLEU1	rs806321-C	NR	2E-18		0.0270575	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
972	chr13	50841322	50841323	rs806321	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or multiple sclerosis	3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls	NA	13q14.2	Intergenic	rs806321-?	NR	5E-8		1.0869565		Illumina [~ 460000] (imputed)	N
972	chr13	50841322	50841323	rs806321	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	13q14.2	Intergenic	rs806321-?	NR	2E-8		1.0863662		Illumina [~ 460000] (imputed)	N
972	chr13	50841322	50841323	rs806321	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	13q14.2	DLEU1	rs806321-?	NR	4E-6			[1.0466-1.1118]	NR [2487152]	N
972	chr13	50841322	50841323	rs806321	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	13q14.2	DLEU1	rs806321-A	NR	5E-7		1.08	[1.07-1.1]	Illumina [465434]	N
972	chr13	50842439	50842440	rs9596270	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	13q14.2	intergenic	rs9596270-T	0.93	7E-7		1.35	[NR]	Affymetrix, Illumina [2529394]	N
972	chr13	50851885	50851886	rs143794540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.2		rs143794540-?	NR	8E-9				NR [~ 8900000] (imputed)	N
972	chr13	50855022	50855023	rs706603	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.2	NR	rs706603-?	NR	2E-8		0.0201	[0.013-0.027] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50859989	50859990	rs806349	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	13q14.2	ST13P4, DLEU7	rs806349-A	0.48	8E-7		1.06	[1.04-1.08]	Illumina [161311]	N
973	chr13	50863918	50863919	rs806352	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.2	DLEU1	rs806352-T	0.4524	7E-7		0.0337	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
973	chr13	50885409	50885410	rs1326128	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	13q14.3	DLEU1	rs1326128-G	NR	1E-6	(men)	0.204	[0.12-0.29] unit increase	Illumina [5527232] (imputed)	N
973	chr13	50888702	50888703	rs17074093	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs17074093-?	NR	1E-8		0.0214	[0.014-0.029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50891046	50891047	rs1262867	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1262867-C	NR	5E-10		0.0176574	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
973	chr13	50900735	50900736	rs12874827	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs12874827-?	NR	1E-8		0.0212	[0.014-0.029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50906027	50906028	rs7331258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs7331258-G	NR	2E-9		0.0186727	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
973	chr13	50910524	50910525	rs2812212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs2812212-G	NR	2E-8		0.0180196	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
973	chr13	50913655	50913656	rs767873499	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.3	DLEU1	rs767873499-C	NR	1E-6		1.235	[0.74-1.73] unit increase	Illumina [212505] (imputed)	N
973	chr13	50913873	50913874	rs12853498	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs12853498-?	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50922772	50922773	rs17074143	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs17074143-?	NR	1E-8		0.0213	[0.014-0.029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50924447	50924448	rs11842790	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs11842790-?	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50925420	50925421	rs3118089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.3	NR	rs3118089-T	NR	3E-10		0.038	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
973	chr13	50925420	50925421	rs3118089	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q14.3	NR	rs3118089-T	NR	8E-11		0.0395	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
973	chr13	50929388	50929389	rs17074145	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs17074145-?	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50931564	50931565	rs12871645	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	NR	rs12871645-?	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50931767	50931768	rs150801689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs150801689-C	NR	6E-11		0.047182	[0.033-0.061] unit decrease	Affymetrix [319769] (imputed)	N
973	chr13	50931767	50931768	rs150801689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs150801689-C	NR	4E-11		0.0477111	[0.034-0.062] unit decrease	Affymetrix [319769] (imputed)	N
973	chr13	50934169	50934170	rs752213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs752213-A	NR	8E-18		0.0265276	[0.02-0.033] unit decrease	Affymetrix [323123] (imputed)	N
973	chr13	50934891	50934892	rs17363566	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	DLEU1	rs17363566-?	NR	7E-9		0.0199	[0.013-0.027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50935921	50935922	rs12874278	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C19:0)	1,910 European ancestry individuals	NA	13q14.3	DLEU1	rs12874278-?	NR	7E-9		0.0199	[0.013-0.027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr13	50945250	50945251	rs3116625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q14.3	NR	rs3116625-C	0.799721	1E-13		0.00711036	[0.005-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
973	chr13	50945250	50945251	rs3116625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q14.3	NR	rs3116625-C	0.799721	4E-10		0.00680088	[0.0045-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
973	chr13	50953244	50953245	rs201801	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q14.3	NR	rs201801-T	0.271527	3E-9		0.0442752	[0.029-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
973	chr13	50954720	50954721	rs201798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q14.3	DLEU1	rs201798-A	0.615011	5E-19		0.020348398	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
973	chr13	50954720	50954721	rs201798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q14.3	DLEU1	rs201798-A	0.615005	6E-18		0.019737808	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
973	chr13	50954720	50954721	rs201798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs201798-A	0.551985	4E-21				Affymetrix, Illumina [19872809] (imputed)	N
973	chr13	50954720	50954721	rs201798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q14.3	NR	rs201798-A	0.614944	6E-23		0.020184	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
973	chr13	50954720	50954721	rs201798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q14.3		rs201798-?	NR	2E-23				NR [~ 8900000] (imputed)	N
973	chr13	50954720	50954721	rs201798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	13q14.3	DLEU1	rs201798-A	0.6158	5E-10		0.02283987	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
973	chr13	50954720	50954721	rs201798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	13q14.3	DLEU1	rs201798-A	0.6157	8E-9		0.02132079	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
973	chr13	50956095	50956096	rs201796	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	13q14.3	DLEU1	rs201796-?	NR	2E-8		0.015	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
973	chr13	50960377	50960378	rs200220	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels (BMI-adjusted)	737 European ancestry females	NA	13q14.3	DLEU1	rs200220-?	NR	7E-7				Illumina [up to 550000]	N
973	chr13	50961492	50961493	rs471315	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs471315-C	0.6837	1E-10		0.047	[0.033-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
973	chr13	50961956	50961957	rs9568402	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	13q14.3	DLEU1	rs9568402-T	NR	5E-9		1.0899183	NR	Affymetrix, Illumina [8278136] (imputed)	N
973	chr13	50963684	50963685	rs41284828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs41284828-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
973	chr13	50963684	50963685	rs41284828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs41284828-?	NR	3E-9				NR [~ 8900000] (imputed)	N
973	chr13	50963684	50963685	rs41284828	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q14.3	NA	rs41284828-A	0.0302	3E-9		0.0341	[0.023-0.045] unit decrease	NR [~ 27400000] (imputed)	N
973	chr13	50969922	50969923	rs188014	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels	737 European ancestry females	NA	13q14.3	DLEU1	rs188014-?		5E-6				Illumina [up to 550000]	N
973	chr13	50980821	50980822	rs2532972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs2532972-C	NR	4E-10		0.0180944	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
973	chr13	50980821	50980822	rs2532972	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs2532972-C	NR	3E-18		0.0273598	[0.021-0.034] unit decrease	Affymetrix [323123] (imputed)	N
973	chr13	50980821	50980822	rs2532972	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs2532972-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
973	chr13	50986117	50986118	rs201789	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	13q14.3	XTP6	rs201789-?	0.28	6E-6	(brachial circumference)	0.17	[0.10-0.24] mm increase	Illumina [316730]	N
974	chr13	50993082	50993083	rs143280072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs143280072-C	NR	2E-12		0.0586049	[0.042-0.075] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	50993082	50993083	rs143280072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs143280072-C	NR	2E-22		0.0881972	[0.07-0.106] unit increase	Affymetrix [323123] (imputed)	N
974	chr13	50997955	50997956	rs7334566	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs7334566-C	0.5965	9E-6		0.0287	[0.016-0.041] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr13	51007525	51007526	rs375519927	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q14.3	DLEU1	rs375519927-?	0.1456	7E-9		0.0237	[0.016-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
974	chr13	51028628	51028629	rs201779	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	13q14.3	NR	rs201779-T	0.0273	7E-6		0.054	[0.03-0.078] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
974	chr13	51035163	51035164	rs9568416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9568416-T	NR	1E-12		0.0290349	[0.021-0.037] unit increase	Affymetrix [319769] (imputed)	N
974	chr13	51035163	51035164	rs9568416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9568416-T	NR	3E-13		0.0298807	[0.022-0.038] unit increase	Affymetrix [319769] (imputed)	N
974	chr13	51037893	51037894	rs9568417	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs9568417-G	NR	8E-9		0.0300407	[0.02-0.04] unit decrease	Affymetrix [323858] (imputed)	N
974	chr13	51042257	51042258	rs10492410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs10492410-G	0.283486	3E-12				Affymetrix, Illumina [24653286] (imputed)	N
974	chr13	51045297	51045297	rs67854369	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q14.3	NR	rs67854369-G	0.303242	4E-9		0.0124182	[0.0083-0.0166] unit increase	Affymetrix [15000001]	N
974	chr13	51047530	51047531	rs201770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs201770-G	NR	6E-13		0.0256001	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
974	chr13	51050826	51050827	rs112664965	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	13q14.3	NR	rs112664965-A	0.04	2E-6		1.88	unit decrease	Illumina [8591557] (imputed)	N
974	chr13	51051310	51051311	rs9568427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9568427-G	NR	5E-11		0.029858	[0.021-0.039] unit decrease	Affymetrix [321788] (imputed)	N
974	chr13	51060808	51060809	rs149872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q14.3		rs149872-C	NR	2E-14		0.0217	[0.016-0.027] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
974	chr13	51061979	51061980	rs61964388	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs61964388-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
974	chr13	51065835	51065836	rs201762	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	RNASEH2B	rs201762-?	NR	7E-6	(gamma aminoisobutyric acid)	0.1918443	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr13	51066622	51066623	rs1262778	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	13q14.3	intergenic	rs1262778-?	NR	8E-6				Affymetrix, Perlegen [1472580] (imputed)	N
974	chr13	51067233	51067234	rs7991128	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q14.3	NR	rs7991128-G	NR	2E-9		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
974	chr13	51068895	51068896	rs1262774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1262774-G	NR	8E-9		0.0178126	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
974	chr13	51076439	51076440	rs1327653	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	13q14.3	NR	rs1327653-T	NR	1E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
974	chr13	51078445	51078446	rs201754	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	13q14.3	DLEU1	rs201754-C	0.22	4E-10		0.0668	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
974	chr13	51081990	51081991	rs9596300	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	13q14.3	intergenic	rs9596300-?	0.853	1E-8	(conditional on Round 1 SNPs)	0.045	unit increase	Affymetrix [10109774] (imputed)	N
974	chr13	51082454	51082455	rs157170	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs157170-A	0.301	3E-12		0.0513	[0.037-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr13	51082803	51082804	rs61962260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q14.3	NR	rs61962260-A	NR	2E-9		0.0167	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
974	chr13	51082943	51082944	rs157165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.3		rs157165-?	NR	3E-42				NR [~ 8900000] (imputed)	N
974	chr13	51083517	51083518	rs12872671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs12872671-A	NR	9E-13		0.0307516	[0.022-0.039] unit decrease	Affymetrix [323123] (imputed)	N
974	chr13	51086363	51086364	rs3116597	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	13q14.3	DLEU1	rs3116597-C	0.23	9E-6		3.54	NR mg increase	NR [NR] (imputed)	N
974	chr13	51087442	51087443	rs202346	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	13q14.3	DLEU1	rs202346-A	0.25	3E-22		0.061691	[0.049-0.074] unit increase	Affymetrix [10109774] (imputed)	N
974	chr13	51088193	51088194	rs79644175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs79644175-G	NR	8E-14		0.0891356	[0.066-0.113] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	51088193	51088194	rs79644175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs79644175-G	NR	4E-16		0.104839	[0.08-0.13] unit increase	Affymetrix [323123] (imputed)	N
974	chr13	51088355	51088356	rs1638703	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	13q14.3		rs1638703-C	0.256	1E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
974	chr13	51088355	51088356	rs1638703	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	13q14.3	DLEU1	rs1638703-C	0.256	2E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
974	chr13	51088808	51088809	rs123378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q14.3		rs123378-A	0.781272113	2E-8		0.06226794	[0.041-0.084] unit decrease	Illumina [13429769] (imputed)	N
974	chr13	51088808	51088809	rs123378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs123378-G	NR	4E-8		0.0169381	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	51088808	51088809	rs123378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs123378-G	NR	6E-11		0.0219235	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
974	chr13	51088808	51088809	rs123378	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	13q14.3	NR	rs123378-G	0.2204	2E-9		0.063	[0.043-0.083] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
974	chr13	51088808	51088809	rs123378	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q14.3	DLEU1	rs123378-G	0.195	2E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
974	chr13	51088808	51088809	rs123378	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	13q14.3	DLEU7, KCNRG	rs123378-G	0.22	5E-9		1.06	1.04-1.09	Illumina [12557761] (imputed)	N
974	chr13	51094113	51094114	rs9316500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q14.3		rs9316500-G	NR	1E-16		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
974	chr13	51094113	51094114	rs9316500	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q14.3	NR	rs9316500-G	0.2924	1E-20		0.0473	[0.037-0.057] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
974	chr13	51094113	51094114	rs9316500	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q14.3	NR	rs9316500-G	0.3528	1E-22		0.0401	[0.032-0.048] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
974	chr13	51094113	51094114	rs9316500	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	13q14.3	DLEU7	rs9316500-?	NR	5E-6	(FEV1 decline in non-asthmatics)	0.1352	[0.077-0.193] unit increase	Illumina [~ 2500000] (imputed)	N
974	chr13	51095907	51095908	rs9562987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q14.3		rs9562987-A	NR	2E-9		0.0413	[0.028-0.055] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
974	chr13	51095907	51095908	rs9562987	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q14.3	NR	rs9562987-A	0.3219	4E-6	(EA)	0.0305	[0.018-0.043] unit decrease	Illumina [~ 11800000] (imputed)	N
974	chr13	51096094	51096095	rs963740	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	13q14.3	DLEU1	rs963740-A	0.6024	4E-13		0.0052	[0.0038-0.0066] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
974	chr13	51096094	51096095	rs963740	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q14.3	DLEU1	rs963740-A	0.7128	2E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
974	chr13	51096094	51096095	rs963740	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	13q14.3	DLEU1	rs963740-T	0.294299268188761	2E-8		0.0479	[0.031-0.065] unit decrease	NR [5035015] (imputed)	N
974	chr13	51099576	51099577	rs3118903	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	13q14.3	DLEU1	rs3118903-A	0.2185	7E-11		0.0575	[0.04-0.075] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
974	chr13	51099576	51099577	rs3118903	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q14.3	NR	rs3118903-A	0.219568	3E-23		0.0813086	[0.065-0.097] unit decrease	Affymetrix [17914406] (imputed)	N
974	chr13	51100096	51100097	rs3118904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1, RP11-175B12.2	rs3118904-A	NR	9E-9		0.0188319	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
974	chr13	51100096	51100097	rs3118904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1, RP11-175B12.2	rs3118904-A	NR	6E-14		0.024222	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
974	chr13	51102241	51102242	rs41284832	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q14.3	LOC101929481	rs41284832-?		4E-6				Illumina [4322238] (imputed)	N
974	chr13	51103460	51103461	rs536338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs536338-C	NR	3E-12		0.0220027	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	51103460	51103461	rs536338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs536338-C	NR	8E-14		0.0257337	[0.019-0.032] unit increase	Affymetrix [323123] (imputed)	N
974	chr13	51105333	51105334	rs3118905	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q14.3		rs3118905-A	0.2768	1E-8		0.14830346	[0.099-0.197] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
974	chr13	51105333	51105334	rs3118905	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	13q14.3		rs3118905-A	0.2767	4E-12		0.10892455	[0.078-0.139] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
974	chr13	51105333	51105334	rs3118905	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.3	NR	rs3118905-?	NR	8E-10		0.05198712	[0.035-0.069] unit decrease	Illumina [34656550] (imputed)	N
974	chr13	51105333	51105334	rs3118905	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	13q14.3	DLEU7	rs3118905-A	0.02	5E-6		0.1	[0.055-0.145] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
974	chr13	51105333	51105334	rs3118905	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	13q14.3	DLEU7	rs3118905-A	0.281	1E-69		0.058	[0.052-0.064] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
974	chr13	51105333	51105334	rs3118905	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q14.3	DLEU7	rs3118905-A	0.29	1E-45		0.056	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
974	chr13	51106521	51106522	rs1239948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1239948-A	NR	7E-19		0.0256675	[0.02-0.031] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	51106521	51106522	rs1239948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1239948-A	NR	3E-20		0.0290328	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
974	chr13	51106521	51106522	rs1239948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q14.3		rs1239948-?	NR	3E-8				NR [~ 8900000] (imputed)	N
974	chr13	51106521	51106522	rs1239948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q14.3		rs1239948-?	NR	1E-8				NR [~ 8900000] (imputed)	N
974	chr13	51106521	51106522	rs1239948	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs1239948-A	0.3973	5E-10		0.043	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr13	51106554	51106555	rs1239947	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	13q14.3	DLEU7	rs1239947-G	0.35	8E-6		3.8	[2.23-5.37] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
974	chr13	51106787	51106788	rs3118906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs3118906-A	NR	1E-15		0.0252163	[0.019-0.031] unit decrease	Affymetrix [321016] (imputed)	N
974	chr13	51106787	51106788	rs3118906	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.3	NR	rs3118906-?	NR	1E-9		0.05151528	[0.035-0.068] unit decrease	Illumina [34656550] (imputed)	N
974	chr13	51106787	51106788	rs3118906	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.3	DLEU1	rs3118906-G	0.723255	2E-29		0.0236465	[0.02-0.028] unit decrease	NR [13737936] (imputed)	N
974	chr13	51106787	51106788	rs3118906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.3		rs3118906-?	NR	2E-174				NR [~ 8900000] (imputed)	N
974	chr13	51106787	51106788	rs3118906	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.3		rs3118906-?	NR	7E-33		0.0272393	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
974	chr13	51106787	51106788	rs3118906	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	13q14.3	DLEU7	rs3118906-G	0.72	2E-24		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
974	chr13	51106787	51106788	rs3118906	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	13q14.3	DLEU7	rs3118906-G	0.69	5E-6	(Pubertal growth)	0.07	[0.043-0.097] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
974	chr13	51107756	51107757	rs1239945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1239945-G	NR	2E-10		0.0200698	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
974	chr13	51107756	51107757	rs1239945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1239945-G	NR	7E-10		0.0193539	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
974	chr13	51107756	51107757	rs1239945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1239945-G	NR	5E-8		0.0175178	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
974	chr13	51107756	51107757	rs1239945	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs1239945-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
974	chr13	51109954	51109955	rs3118910	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	DLEU7	rs3118910-T	0.226	3E-12	(EA, men)	0.0407	[0.029-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
974	chr13	51109954	51109955	rs3118910	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	DLEU7	rs3118910-T	0.226	2E-7	(EA)	0.0218	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
974	chr13	51111354	51111355	rs3116602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q14.3		rs3116602-G	NR	4E-112		0.0437	[0.04-0.047] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
974	chr13	51111354	51111355	rs3116602	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.3	DLEU1	rs3116602-T	0.7847	1E-154		0.0612	[0.057-0.066] unit increase	Affymetrix [18391927] (imputed)	N
974	chr13	51111354	51111355	rs3116602	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.3	NR	rs3116602-?	NR	7E-7		0.0503148	[0.03-0.07] unit decrease	Illumina [34656550] (imputed)	N
974	chr13	51111354	51111355	rs3116602	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	13q14.3	DLEU7	rs3116602-G	0.21	7E-9		0.04	[0.00-0.07] s.d. decrease (males)	Affymetrix [402951]	N
974	chr13	51111765	51111766	rs1239941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1239941-A	NR	1E-13		0.0275781	[0.02-0.035] unit increase	Affymetrix [321016] (imputed)	N
974	chr13	51116900	51116901	rs3118914	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	13q14.3	NR	rs3118914-?	NR	2E-6		0.0482781	[0.028-0.068] unit decrease	Illumina [34656550] (imputed)	N
974	chr13	51116900	51116901	rs3118914	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	13q14.3	DLEU7	rs3118914-?	0.39	4E-10		0.08	[0.05-0.11] s.d. decrease	Illumina [229216]	N
974	chr13	51117597	51117597	rs111564848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs111564848-C	NR	2E-16		0.0289899	[0.022-0.036] unit increase	Affymetrix [323123] (imputed)	N
975	chr13	51119136	51119137	rs1239954	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.3	intergenic	rs1239954-A	0.0060	9E-6	(TBF-b1 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
975	chr13	51120097	51120097	rs71190381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs71190381-GAGTGA	NR	5E-28		0.0410483	[0.034-0.048] unit decrease	Affymetrix [323123] (imputed)	N
975	chr13	51120097	51120097	rs71190381	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	13q14.3	NR	rs71190381-GAGTGA	0.212953	5E-12		0.0824584	[0.059-0.106] unit decrease	Affymetrix [21375087] (imputed)	N
975	chr13	51121377	51121378	rs199565066	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	13q14.3		rs199565066-C	NR	7E-8		0.217084	[0.14-0.3] unit decrease	NR [2787054] (imputed)	N
975	chr13	51121546	51121547	rs9535463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q14.3		rs9535463-A	NR	3E-28		0.0269	[0.022-0.032] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
975	chr13	51121743	51121744	rs7990677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs7990677-T	NR	4E-9		0.0174614	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
975	chr13	51122117	51122118	rs3116607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs3116607-A	NR	2E-10		0.0232811	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
975	chr13	51122364	51122365	rs1327646	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs1327646-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51122502	51122503	rs1327645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1327645-G	NR	2E-20		0.0298492	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51123927	51123928	rs2297001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs2297001-A	NR	3E-11		0.0247466	[0.017-0.032] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51128799	51128800	rs4643207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs4643207-G	NR	3E-11		0.0189972	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51128799	51128800	rs4643207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs4643207-G	NR	2E-13		0.022904	[0.017-0.029] unit increase	Affymetrix [323123] (imputed)	N
975	chr13	51129734	51129735	rs4531637	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.3	DLEU1	rs4531637-A	0.853	1E-12		0.0208	[0.015-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
975	chr13	51130374	51130374	rs35681675	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	13q14.3	NR	rs35681675-TC	0.388614	2E-8		0.0567087	[0.037-0.076] unit decrease	Affymetrix [21375087] (imputed)	N
975	chr13	51132902	51132903	rs9568448	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	13q14.3	NR	rs9568448-T	0.133791	9E-10		0.0891224	[0.061-0.118] unit increase	Affymetrix [21375087] (imputed)	N
975	chr13	51133297	51133298	rs17074568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs17074568-A	NR	3E-14		0.0557078	[0.041-0.07] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51133654	51133655	rs279070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q14.3		rs279070-G	NR	1E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
975	chr13	51135741	51135742	rs117496431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs117496431-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51135741	51135742	rs117496431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q14.3		rs117496431-?	NR	1E-14				NR [~ 8900000] (imputed)	N
975	chr13	51136738	51136739	rs978332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs978332-C	NR	1E-10		0.0221318	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
975	chr13	51136738	51136739	rs978332	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs978332-T	0.7211	6E-8		0.0413	[0.026-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51136807	51136808	rs3118916	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q14.3	DLEU1	rs3118916-A	0.2105	6E-6		0.0379	[0.021-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51137528	51137529	rs1149821	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.3		rs1149821-?	NR	2E-20		0.0189142	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
975	chr13	51137528	51137529	rs1149821	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q14.3	DLEU1	rs1149821-T	0.455872	4E-10		0.0219505	[0.015-0.029] unit increase	NR [17166351] (imputed)	N
975	chr13	51137528	51137529	rs1149821	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q14.3	DLEU1	rs1149821-T	0.455598	3E-6	(men)	0.0250868	[0.015-0.035] unit increase	NR [17166351] (imputed)	N
975	chr13	51139114	51139115	rs7337242	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.3	NR	rs7337242-G	0.01568	7E-9	(CSTA)	0.02549	NR unit increase	Illumina [1671387] (imputed)	N
975	chr13	51141996	51141997	rs17074575	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Tumor necrosis factor alpha levels	13,577 Finnish ancestry individuals	NA	13q14.3	DLEU1	rs17074575-G	0.002	3E-9		2.131	unit increase	Illumina [NR] (imputed)	N
975	chr13	51143054	51143055	rs3116613	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	13q14.3	DLEU1, BCMS	rs3116613-G	0.211	4E-8	(EA)	0.014	[0.01-0.018] unit increase	NR [12082474] (imputed)	N
975	chr13	51146068	51146069	rs3118917	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs3118917-T	0.0433	1E-9		0.107	[0.073-0.141] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51147468	51147469	rs113676749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs113676749-?	NR	5E-22				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51147468	51147469	rs113676749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q14.3	NR	rs113676749-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51150721	51150721	rs796758829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs796758829-C	NR	4E-8		0.0474327	[0.03-0.064] unit decrease	Affymetrix [323858] (imputed)	N
975	chr13	51150721	51150721	rs796758829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs796758829-C	NR	4E-8		0.0475581	[0.031-0.065] unit decrease	Affymetrix [127266] (imputed)	N
975	chr13	51150729	51150730	rs3116614	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	13q14.3	DLEU1	rs3116614-A	0.7941	7E-8		0.0553	[0.035-0.075] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51150729	51150730	rs3116614	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs3116614-A	0.7843	6E-24		0.0797	[0.064-0.095] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51151860	51151861	rs1239706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q14.3	DLEU1	rs1239706-G	0.421395	2E-9		0.013586088	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr13	51152421	51152422	rs1239705	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.3		rs1239705-?	NR	1E-19		0.0183924	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
975	chr13	51152553	51152554	rs73485691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs73485691-A	NR	5E-14		0.0548958	[0.041-0.069] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51152610	51152611	rs1239704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q14.3		rs1239704-A	0.757326	6E-16		0.0190944	[0.014-0.024] unit decrease	Illumina [13479295] (imputed)	N
975	chr13	51152610	51152611	rs1239704	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	13q14.3	DLEU1, DLEU7	rs1239704-G	0.324	8E-8				Affymetrix [432921]	N
975	chr13	51152610	51152611	rs1239704	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q14.3	DLEU1, DLEU7	rs1239704-?	NR	1E-20		0.031107347	[0.025-0.038] unit decrease	Illumina [27896057] (imputed)	N
975	chr13	51153474	51153475	rs17074618	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q14.3	DLEU1	rs17074618-T	0.1535	2E-24		0.0269	[0.022-0.032] unit increase	Affymetrix [18391927] (imputed)	N
975	chr13	51162968	51162969	rs7332114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs7332114-T	NR	5E-8		0.020018	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
975	chr13	51163180	51163180	rs11391312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q14.3	NR	rs11391312-I	0.535905	8E-15		0.015984	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
975	chr13	51165493	51165494	rs1239682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q14.3		rs1239682-T	NR	3E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
975	chr13	51165493	51165494	rs1239682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q14.3	DLEU1	rs1239682-T	0.534605	2E-12		0.015573256	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr13	51168966	51168967	rs35916479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs35916479-A	NR	1E-8		0.0424121	[0.028-0.057] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51170791	51170792	rs116346582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs116346582-A	NR	1E-12		0.0280361	[0.02-0.036] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51170791	51170792	rs116346582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs116346582-A	NR	5E-11		0.0258865	[0.018-0.034] unit increase	Affymetrix [127266] (imputed)	N
975	chr13	51170791	51170792	rs116346582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs116346582-A	NR	9E-9		0.0224233	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51171710	51171711	rs7997464	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs7997464-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51172023	51172024	rs797520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs797520-A	NR	5E-8		0.0155812	[0.01-0.0212] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51172023	51172024	rs797520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs797520-A	NR	2E-17		0.0250668	[0.019-0.031] unit increase	Affymetrix [321788] (imputed)	N
975	chr13	51172614	51172615	rs590797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs590797-T	NR	3E-22		0.0470406	[0.038-0.057] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51172962	51172963	rs558003	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	DLEU7	rs558003-A	0.0969	5E-11	(EA, women)	0.0527	[0.037-0.068] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr13	51172962	51172963	rs558003	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	DLEU7	rs558003-A	0.0969	4E-15	(EA)	0.0493	[0.037-0.062] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr13	51172962	51172963	rs558003	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	DLEU7	rs558003-A	0.0969	3E-7	(EA,men)	0.0459	[0.028-0.064] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
975	chr13	51173731	51173732	rs475883	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs475883-C	0.0983	8E-7		0.0543	[0.033-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51174637	51174638	rs9535468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9535468-T	NR	3E-10		0.0178183	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51176677	51176678	rs1341635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1341635-T	NR	2E-11		0.0248458	[0.018-0.032] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51176677	51176678	rs1341635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1341635-T	NR	3E-10		0.0235002	[0.016-0.031] unit increase	Affymetrix [127266] (imputed)	N
975	chr13	51176677	51176678	rs1341635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1341635-T	NR	8E-10		0.0225792	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51178369	51178370	rs484304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs484304-C	NR	1E-8		0.0184554	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51181491	51181492	rs759395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs759395-T	NR	5E-12		0.0399791	[0.029-0.051] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51181491	51181492	rs759395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs759395-T	NR	1E-10		0.0373765	[0.026-0.049] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51181491	51181492	rs759395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs759395-T	NR	2E-18		0.0508216	[0.039-0.062] unit increase	Affymetrix [321016] (imputed)	N
975	chr13	51181491	51181492	rs759395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs759395-T	NR	2E-16		0.0518466	[0.039-0.064] unit increase	Affymetrix [323123] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1262720-A	NR	3E-25		0.0451085	[0.037-0.054] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1262720-A	NR	7E-24		0.0437668	[0.035-0.052] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1262720-A	NR	1E-15		0.0359442	[0.027-0.045] unit increase	Affymetrix [321788] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1262720-A	NR	3E-14		0.0375992	[0.028-0.047] unit increase	Affymetrix [323858] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs1262720-A	NR	1E-20		0.044163	[0.035-0.053] unit increase	Affymetrix [323123] (imputed)	N
975	chr13	51184424	51184425	rs1262720	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs1262720-A	NR	6E-11		0.028722	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
975	chr13	51184424	51184425	rs1262720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs1262720-?	NR	8E-40				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51184424	51184425	rs1262720	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q14.3		rs1262720-?	NR	2E-40				NR [~ 8900000] (imputed)	N
975	chr13	51184927	51184928	rs2039100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs2039100-A	NR	3E-9		0.019003	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
975	chr13	51184927	51184928	rs2039100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs2039100-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
975	chr13	51187226	51187227	rs117906015	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	13q14.3	NR	rs117906015-G		8E-6		0.716	[0.4-1.03] SD units decrease	NR [10700000] (imputed)	N
975	chr13	51187370	51187371	rs17383309	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	13q14.3	DLEU1	rs17383309-T	0.226	1E-6		0.0519	[0.031-0.073] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51187370	51187371	rs17383309	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	13q14.3	DLEU1	rs17383309-T	0.226	2E-6		0.0505	[0.03-0.071] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51192070	51192071	rs7325508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs7325508-T	NR	1E-16		0.0233973	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
975	chr13	51192070	51192071	rs7325508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs7325508-T	NR	8E-12		0.0192915	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
975	chr13	51192228	51192228	rs138136987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs138136987-GA	NR	1E-28		0.0328207	[0.027-0.039] unit decrease	Affymetrix [321788] (imputed)	N
975	chr13	51194404	51194405	rs573666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	13q14.3		rs573666-T	NR	2E-9		0.0723	[0.049-0.096] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
975	chr13	51194404	51194405	rs573666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs573666-T	NR	5E-9		0.0174187	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51194404	51194405	rs573666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs573666-T	NR	1E-9		0.018012	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51194404	51194405	rs573666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs573666-T	NR	2E-15		0.0245703	[0.019-0.031] unit increase	Affymetrix [321788] (imputed)	N
975	chr13	51194404	51194405	rs573666	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	13q14.3	AJ412031	rs573666-G	NR	9E-6		1.3	[1.16-1.47]	Illumina [698968]	N
975	chr13	51201044	51201045	rs549058	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q14.3	DLEU1	rs549058-G	0.879681	5E-9		0.0171598	[0.011-0.023] unit decrease	Affymetrix [NR] (imputed)	N
975	chr13	51207074	51207075	rs112501164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs112501164-G	NR	8E-10		0.047787	[0.033-0.063] unit increase	Affymetrix [321788] (imputed)	N
975	chr13	51211742	51211742	rs537814862	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs537814862-A	NR	4E-17		0.0238858	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
975	chr13	51216270	51216271	rs751733865	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.3	BCMS	rs751733865-A	NR	1E-6		1.242	[0.74-1.74] unit increase	Illumina [212505] (imputed)	N
975	chr13	51221270	51221271	rs3121213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs3121213-A	NR	1E-9		0.0189656	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
975	chr13	51221617	51221618	rs797486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1	rs797486-C	NR	8E-14		0.0359133	[0.026-0.045] unit decrease	Affymetrix [323858] (imputed)	N
975	chr13	51221617	51221618	rs797486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q14.3	DLEU1	rs797486-C	NR	2E-13		0.0354116	[0.026-0.045] unit decrease	Affymetrix [127266] (imputed)	N
975	chr13	51221617	51221618	rs797486	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	13q14.3	NR	rs797486-A	0.9	7E-44		0.037	[0.032-0.042] unit increase	Affymetrix [2446094] (imputed)	N
975	chr13	51221617	51221618	rs797486	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	13q14.3	NR	rs797486-A	0.9	5E-8				Affymetrix [2446094] (imputed)	N
975	chr13	51221617	51221618	rs797486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	13q14.3	NR	rs797486-A	0.893	4E-46		0.0373	[0.032-0.042] unit increase	NR [~ 27400000] (imputed)	N
975	chr13	51221617	51221618	rs797486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	13q14.3	NR	rs797486-A	0.893	4E-46		0.0373	[0.032-0.042] unit increase	NR [~ 27400000] (imputed)	N
975	chr13	51221617	51221618	rs797486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q14.3	NA	rs797486-A	0.8938	1E-34		0.0316	[0.027-0.037] unit increase	NR [~ 27400000] (imputed)	N
975	chr13	51221617	51221618	rs797486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	13q14.3	NR	rs797486-A	0.8938	1E-34		0.0316	[0.027-0.037] unit increase	NR [~ 27400000] (imputed)	N
975	chr13	51221617	51221618	rs797486	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	13q14.3	NR	rs797486-A	0.8938	1E-34		0.0316	[0.027-0.037] unit increase	NR [~ 27400000] (imputed)	N
975	chr13	51221617	51221618	rs797486	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	13q14.3	DLEU7	rs797486-A	NR	1E-8		0.016133958	[0.011-0.022] unit increase	Illumina [242289]	N
975	chr13	51221617	51221618	rs797486	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	13q14.3	NR	rs797486-A	0.88	7E-6		0.021	unit increase	Illumina [242289]	N
975	chr13	51224308	51224309	rs797487	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.3	NR	rs797487-?	NR	1E-8				Affymetrix [NR]	N
975	chr13	51226953	51226954	rs797512	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	13q14.3	NR	rs797512-C	0.409982	8E-9		0.058917	[0.039-0.078] unit decrease	Affymetrix [21375087] (imputed)	N
975	chr13	51231388	51231388	rs386363597	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs386363597-A	0.5942	1E-7		0.0365	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr13	51234239	51234240	rs2408111	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	13q14.3	NR	rs2408111-A	0.1329	3E-9		1.05	[1.04-1.06]	Affymetrix, Illumina [10862568] (imputed)	N
976	chr13	51252980	51252981	rs9535475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9535475-A	NR	3E-10		0.0468557	[0.032-0.061] unit decrease	Affymetrix [319769] (imputed)	N
976	chr13	51252980	51252981	rs9535475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q14.3	DLEU1	rs9535475-A	NR	2E-10		0.0472284	[0.033-0.062] unit decrease	Affymetrix [319769] (imputed)	N
976	chr13	51273203	51273204	rs2706236	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	RNASEH2B	rs2706236-?	NR	3E-6	(SM 22:0)	0.17641024	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
976	chr13	51278082	51278083	rs193276105	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU1	rs193276105-C	0.9923	5E-6		0.2262	[0.13-0.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
976	chr13	51286082	51286083	rs2540523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU1, DLEU7	rs2540523-T	NR	2E-8		0.0297771	[0.019-0.04] unit decrease	Affymetrix [323123] (imputed)	N
976	chr13	51293036	51293037	rs2761843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q14.3	DLEU1, DLEU7	rs2761843-C	0.157645	3E-10		0.019506112	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
976	chr13	51299119	51299120	rs2812237	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU7	rs2812237-A	NR	4E-8		0.0230437	[0.015-0.031] unit decrease	Affymetrix [323123] (imputed)	N
976	chr13	51300277	51300278	rs2812238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q14.3	DLEU7	rs2812238-C	0.148621	5E-15		0.024464242	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
976	chr13	51302309	51302310	rs3118077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.3		rs3118077-?	NR	5E-21				NR [~ 8900000] (imputed)	N
976	chr13	51308499	51308500	rs79528914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q14.3	DLEU7	rs79528914-T	NR	8E-10		0.0326372	[0.022-0.043] unit increase	Affymetrix [321016] (imputed)	N
976	chr13	51308499	51308500	rs79528914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q14.3	DLEU7	rs79528914-T	NR	1E-9		0.0353825	[0.024-0.047] unit increase	Affymetrix [323123] (imputed)	N
976	chr13	51313407	51313408	rs2812251	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q14.3	DLEU7	rs2812251-A	0.9065	2E-6		0.0558	[0.033-0.079] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
976	chr13	51340314	51340315	rs592333	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	13q14.3	NR	rs592333-A	NR	4E-7		0.00823	[0.005-0.0114] unit decrease	NR [11010159] (imputed)	N
976	chr13	51340314	51340315	rs592333	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	13q14.3	NR	rs592333-A	NR	7E-12		0.00947	[0.0068-0.0121] unit decrease	NR [11010159] (imputed)	N
976	chr13	51340314	51340315	rs592333	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	13q14.3	NR	rs592333-A	NR	1E-17		0.00905794	[0.007-0.0111] unit decrease	NR [11010159] (imputed)	N
976	chr13	51340314	51340315	rs592333	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	13q14.3	NR	rs592333-A	NR	8E-18	(adjusted for BMI)	0.00893	[0.0069-0.011] unit decrease	NR [11010159] (imputed)	N
976	chr13	51340314	51340315	rs592333	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	13q14.3	NR	rs592333-G	0.4433	1E-16		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
976	chr13	51368437	51368438	rs11287814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q14.3		rs11287814-C	NR	4E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
977	chr13	51383942	51383943	rs7989991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q14.3		rs7989991-G	NR	2E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
977	chr13	51384009	51384010	rs7990306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs7990306-T	0.545265	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
977	chr13	51384009	51384010	rs7990306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q14.3	NR	rs7990306-T	0.571201	4E-13		0.013475	[0.0098-0.0171] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
977	chr13	51384737	51384738	rs780360029	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs780360029-T	NR	4E-7		1.253	[0.77-1.74] unit increase	Illumina [212505] (imputed)	N
977	chr13	51386888	51386889	rs1841677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs1841677-T	0.5671	6E-10		0.013900376	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
977	chr13	51386888	51386889	rs1841677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs1841677-T	0.567068	5E-11		0.014753944	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
977	chr13	51386888	51386889	rs1841677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q14.3	NR	rs1841677-T	0.566792	5E-13		0.013518	[0.0099-0.0172] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
977	chr13	51387023	51387024	rs11617827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	13q14.3	NR	rs11617827-A	NR	4E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr13	51388959	51388960	rs9535495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs9535495-T	0.558083	5E-22		0.021851143	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51388959	51388960	rs9535495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs9535495-T	0.558076	1E-17		0.019326836	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51388959	51388960	rs9535495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs9535495-T	0.558059	2E-21		0.021432204	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51388959	51388960	rs9535495	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	13q14.3	DLEU7-AS1, DLEU7	rs9535495-T	0.5569	3E-11		0.02426266	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
977	chr13	51388959	51388960	rs9535495	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	13q14.3	DLEU7-AS1, DLEU7	rs9535495-T	0.5568	1E-9		0.02220029	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
977	chr13	51388959	51388960	rs9535495	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	13q14.3	DLEU7-AS1, DLEU7	rs9535495-T	0.5569	1E-13		0.02694815	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
977	chr13	51388959	51388960	rs9535495	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	13q14.3	DLEU7-AS1, DLEU7	rs9535495-T	0.5569	1E-12		0.02588124	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
977	chr13	51390597	51390598	rs9316505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs9316505-A	0.556391	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
977	chr13	51390597	51390598	rs9316505	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		13q14.3	DLEU7	rs9316505-A	NR	3E-8		0.133	[0.086-0.18] unit increase	Illumina [2446724] (imputed)	N
977	chr13	51391995	51391996	rs595035	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q14.3	NR	rs595035-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
977	chr13	51392584	51392585	rs7326822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs7326822-G	0.561056	6E-25		0.023254097	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51409790	51409791	rs9568481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	13q14.3	DLEU7, DLEU7-AS1	rs9568481-T	0.493312	3E-14		0.017144727	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51445559	51445560	rs7994724	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	13q14.3	DLEU7	rs7994724-?	0.3706	2E-17		1.04	[1.03-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
977	chr13	51446113	51446114	rs12429206	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	13q14.3	intergenic	rs12429206-?	0.343	7E-8	(conditional on Round 3 SNPs)	0.031	unit increase	Affymetrix [10109774] (imputed)	N
977	chr13	51452527	51452528	rs76898533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs76898533-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
977	chr13	51464000	51464001	rs9568486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	13q14.3	RNASEH2B-AS1	rs9568486-C	NR	1E-8		0.0224191	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
977	chr13	51464000	51464001	rs9568486	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs9568486-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
977	chr13	51478917	51478918	rs6561599	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	13q14.3		rs6561599-G	0.629	6E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [42907111] (imputed)	N
977	chr13	51478917	51478918	rs6561599	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	13q14.3	RNASEH2B	rs6561599-G	0.371	1E-8		1.0752687	[1.04-1.1]	Affymetrix, Illumina [42907111] (imputed)	N
977	chr13	51483183	51483184	rs61962192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q14.3	RNASEH2B-AS1	rs61962192-C	0.026384	2E-11		0.047099818	[0.033-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr13	51489185	51489186	rs9526707	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q14.3	RNASEH2B	rs9526707-A	0.3167	2E-13		0.1939	[0.14-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
977	chr13	51491961	51491962	rs17074987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q14.3		rs17074987-?	NR	2E-8				NR [~ 8900000] (imputed)	N
977	chr13	51509800	51509801	rs183159852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.3		rs183159852-?	NR	2E-8				NR [~ 8900000] (imputed)	N
978	chr13	51511348	51511358	rs149628744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q14.3	RNASEH2B	rs149628744-A	0.026203	9E-14		0.0490703	[0.036-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
978	chr13	51511348	51511358	rs149628744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q14.3	RNASEH2B	rs149628744-A	0.026215	4E-11		0.045795664	[0.032-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
978	chr13	51511348	51511348	rs750931137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q14.3	NR	rs750931137-D	0.026189	4E-14		0.04722	[0.035-0.059] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
978	chr13	51511348	51511348	rs750931137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q14.3	NR	rs750931137-D	0.026199	6E-11		0.041242	[0.029-0.054] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
978	chr13	51516309	51516310	rs57199709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q14.3		rs57199709-G	NR	3E-9		0.0441	[0.03-0.059] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
978	chr13	51516309	51516310	rs57199709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q14.3		rs57199709-?	NR	1E-12				NR [~ 8900000] (imputed)	N
978	chr13	51539697	51539698	rs61962202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs61962202-C	0.0270723	3E-13				Affymetrix, Illumina [24246363] (imputed)	N
978	chr13	51576169	51576170	rs3790022	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	13q14.3	RNASEH2B, FAM124A	rs3790022-?		1E-6		1.4925	[NR]	Illumina [452367]	N
978	chr13	51576983	51576984	rs17650569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q14.3	NR	rs17650569-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
978	chr13	51637036	51637037	rs9535564	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	FAM124A	rs9535564-?	NR	1E-6	(oxalate)	0.23244838	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
978	chr13	51640424	51640425	rs9535566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.3		rs9535566-?	NR	3E-16				NR [~ 8900000] (imputed)	N
979	chr13	51689585	51689586	rs11618218	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	13q14.3	LINC00371	rs11618218-T	0.192	8E-6		0.147	[NR] unit increase	Illumina [625127]	N
979	chr13	51708405	51708406	rs9563027	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative atrial fibrillation after cardiac surgery	242 cases, 640 controls	NA	13q14.3	LINC00371	rs9563027-?	NR	1E-6	(adjusted for delirium, myocardial infarction, renal failure and stroke)	1.7857143	[1.41-2.22]	Illumina [9007469] (imputed)	N
979	chr13	51724663	51724664	rs7325564	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	13q14.3	LINC00371	rs7325564-T	0.27	1E-8	(nasion-pronasale distance)	0.094	NR unit increase	Illumina [7029494] (imputed)	N
979	chr13	51724663	51724664	rs7325564	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q14.3	NR	rs7325564-C	0.748729805345211	5E-6	(IGP9)	0.2463	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
980	chr13	51799496	51799497	rs9526736	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q14.3	GUCY1B2, FAM124A, SERPINE3	rs9526736-?		9E-9				Affymetrix, Illumina [NR] (imputed)	N
980	chr13	51807787	51807788	rs77733101	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		FAM124A	rs77733101-T	0.19	7E-6				Illumina [1679420] (imputed)	N
980	chr13	51846604	51846605	rs1006064	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	13q14.3	FAM124A	rs1006064-?		5E-6		0.252	[NR] unit decrease	Illumina [5970354] (imputed)	N
980	chr13	51856009	51856010	rs17837210	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	13q14.3	FAM124A	rs17837210-A		9E-6		1.8	[1.39-2.33]	Illumina [up to 4983952] (imputed)	N
980	chr13	51871869	51871870	rs766345636	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Lipoprotein (a) levels	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	NA	13q14.3	FAM124A	rs766345636-C	NR	5E-7		1.275	[0.78-1.77] unit increase	Illumina [212505] (imputed)	N
980	chr13	51900441	51900442	rs1028727	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	13q14.3	SERPINE3	rs1028727-T	0.16	2E-8	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
980	chr13	51900441	51900442	rs1028727	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	13q14.3	SERPINE3	rs1028727-T	0.16	9E-8		0.0285	NR mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
981	chr13	51924374	51924375	rs7338174	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	13q14.3	SERPINE3, MIR5693	rs7338174-?	NR	6E-6			[NR]	Illumina [283437]	N
981	chr13	52006644	52006645	rs7327381	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	13q14.3		rs7327381-T	NR	3E-10		0.0138	[0.0097-0.0179] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
981	chr13	52006644	52006645	rs7327381	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	13q14.3		rs7327381-T	0.41	4E-34		0.012	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
981	chr13	52006644	52006645	rs7327381	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	13q14.3		rs7327381-T	0.4	2E-9		0.015	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
982	chr13	52132230	52132231	rs79083736	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.3	NR	rs79083736-G	0.01045	2E-8	(LASP1)	0.04828	NR unit increase	Illumina [1671387] (imputed)	N
982	chr13	52145803	52145804	rs2477604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q14.3		rs2477604-C	NR	1E-8		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
984	chr13	52327230	52327231	rs7328695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q14.3		rs7328695-A	NR	3E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
984	chr13	52335200	52335201	rs9535753	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	13q14.3	WDFY2	rs9535753-C	0.18	4E-8		0.28	unit increase	Illumina [5600000] (imputed)	N
984	chr13	52343003	52343004	rs41292776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q14.3		rs41292776-G	NR	2E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
984	chr13	52343003	52343004	rs41292776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q14.3		rs41292776-?	NR	8E-15				NR [~ 8900000] (imputed)	N
984	chr13	52344003	52344004	rs77733744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q14.3		rs77733744-A	NR	6E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
984	chr13	52344003	52344004	rs77733744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q14.3	DHRS12	rs77733744-A	0.173026	2E-11		0.019658744	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
984	chr13	52345636	52345637	rs2296028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs2296028-C	0.173799	6E-13				Affymetrix, Illumina [24649327] (imputed)	N
984	chr13	52345636	52345637	rs2296028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q14.3	NR	rs2296028-C	0.174415	7E-14		0.018404	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
984	chr13	52345636	52345637	rs2296028	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q14.3	DHRS12	rs2296028-G	0.827659	1E-9		0.014911	[0.01-0.02] unit increase	NR [13737936] (imputed)	N
984	chr13	52345636	52345637	rs2296028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q14.3		rs2296028-?	NR	4E-11				NR [~ 8900000] (imputed)	N
984	chr13	52345636	52345637	rs2296028	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q14.3		rs2296028-?	NR	4E-11		0.0186437	[0.013-0.024] unit increase	Affymetrix [20259828] (imputed)	N
984	chr13	52374488	52374489	rs512948	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	13q14.3	DHRS12	rs512948-C	NR	1E-8	(LPE(18:2;0))	0.2162	[0.14-0.29] unit decrease	Illumina [~ 9300000] (imputed)	N
984	chr13	52421449	52421450	rs12874582	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	DHRS12	rs12874582-?	NR	8E-6	(SM 24:1)	0.77998215	[0.44-1.12] unit increase	Affymetrix [at least 2500000] (imputed)	N
985	chr13	52495389	52495390	rs144942726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q14.3		rs144942726-T	NR	3E-8		0.0364	[0.024-0.049] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
985	chr13	52495389	52495390	rs144942726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q14.3		rs144942726-?	NR	2E-9				NR [~ 8900000] (imputed)	N
985	chr13	52495389	52495390	rs144942726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q14.3		rs144942726-?	NR	2E-13				NR [~ 8900000] (imputed)	N
985	chr13	52510219	52510220	rs544937844	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	13q14.3	ATP7B	rs544937844-T	0.0051	2E-6		0.4174	[0.25-0.59] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
985	chr13	52520434	52520435	rs1801248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q14.3		rs1801248-T	NR	5E-9		0.0346	[0.023-0.046] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
985	chr13	52520434	52520435	rs1801248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q14.3	ATP7B	rs1801248-T	0.041515	6E-12		0.03858958	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr13	52520434	52520435	rs1801248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q14.3	NR	rs1801248-T	0.0352122	4E-11				Affymetrix, Illumina [24246363] (imputed)	N
985	chr13	52520434	52520435	rs1801248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q14.3	NR	rs1801248-T	0.04091	2E-13		0.033986	[0.025-0.043] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
985	chr13	52520434	52520435	rs1801248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q14.3	NR	rs1801248-T	0.041254	3E-10		0.030585	[0.021-0.04] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
986	chr13	52586751	52586752	rs111871296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q14.3		rs111871296-?	NR	6E-10				NR [~ 8900000] (imputed)	N
986	chr13	52609207	52609208	rs12430077	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q14.3	NR	rs12430077-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
986	chr13	52658459	52658460	rs116924021	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	13q14.3	NR	rs116924021-?	NR	7E-6		0.07186	[0.041-0.103] unit decrease	Affymetrix [9658292] (imputed)	N
987	chr13	52794785	52794786	rs61957300	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Chlamydia trachomatis PorB antibody levels	273 White British ancestry individuals	NA	13q14.3	TPTE2P2	rs61957300-A	0.975	4E-8		1.28	[0.83-1.73] unit decrease	NR [25472218] (imputed)	N
989	chr13	52971516	52971517	rs41292808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q14.3	THSD1	rs41292808-T	0.027	6E-33	(Thrombospondin type-1 domain-containing protein 1, THSD1.5621.64.3)	0.91	[0.75-1.07] unit increase	Affymetrix [10572788] (imputed)	N
989	chr13	53009047	53009048	rs11148252	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	13q14.3	VPS36	rs11148252-C	0.5913	9E-6	(Ordinal I)	0.2351	[0.13-0.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
990	chr13	53091599	53091600	rs141118132	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q14.3	Intergenic	rs141118132-?		8E-6		3.12	[1.89-5.14]	Illumina [7645193] (imputed)	N
990	chr13	53132026	53132027	rs61960582	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q14.3	Intergenic	rs61960582-A	NR	8E-7	(between families)	4.927	unit increase	Affymetrix [up to 15107142] (imputed)	N
991	chr13	53286949	53286950	rs7330220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q14.3		rs7330220-?	NR	7E-8				NR [~ 8900000] (imputed)	N
992	chr13	53388884	53388885	rs9568764	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	13q14.3	NR	rs9568764-G		9E-6		0.0801	[0.045-0.116] SD units decrease	NR [10700000] (imputed)	N
993	chr13	53493727	53493728	rs2146641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs2146641-?	NR	3E-8				NR [~ 8900000] (imputed)	N
993	chr13	53494693	53494694	rs9536318	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	13q14.3	PCDH8	rs9536318-?	0.17	8E-7	(No asthma)	1.25	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
993	chr13	53498446	53498447	rs9596720	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.3	NR	rs9596720-?	NR	1E-6	(AA)	35.15	[32.97-37.33]	Illumina [905956]	N
993	chr13	53501306	53501307	rs10467515	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q14.3	NR	rs10467515-?	NR	1E-6	(AA)	35.43	[33.27-37.59]	Illumina [905956]	N
993	chr13	53504674	53504675	rs9527039	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	13q14.3	PCDH8, OLFM4	rs9527039-C	0.069	6E-9		0.061	[0.041-0.081] unit decrease	Illumina [7358575] (imputed)	N
993	chr13	53517883	53517884	rs732949	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	13q14.3	OLFM4, PCDH8	rs732949-C	NR	8E-6		0.166	[0.093-0.239] unit increase	Affymetrix [736996]	N
993	chr13	53526033	53526034	rs12430558	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	13q14.3	NR	rs12430558-?	NR	2E-6		0.1927	[0.11-0.27] unit increase	Illumina [at least 560000] (imputed)	N
993	chr13	53605234	53605235	rs8000124	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs8000124-A	0.564	4E-6	(Trans-16:1n-7, EA)	0.0026	[0.0014-0.0038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53613330	53613331	rs3803259	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q14.3	NR	rs3803259-?	NR	3E-6		4.682	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
994	chr13	53613558	53613559	rs9568797	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	13q14.3	OLFM4	rs9568797-?		1E-7				Illumina [859311]	N
994	chr13	53613989	53613990	rs8181889	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs8181889-G	0.6008	9E-10		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
994	chr13	53613989	53613990	rs8181889	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q14.3	NR	rs8181889-A	NR	4E-8		5.489	z score decrease	Affymetrix [10847151] (imputed)	N
994	chr13	53614553	53614554	rs9568798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q14.3		rs9568798-T	0.2912	2E-9		0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
994	chr13	53625780	53625781	rs12552	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	13q14.3	NR	rs12552-?		4E-11				NR [520857]	N
994	chr13	53625780	53625781	rs12552	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	13q14.3	NR	rs12552-?		2E-10				NR [11140414]	N
994	chr13	53625780	53625781	rs12552	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	13q14.3	NR	rs12552-A	NR	1E-23		1.04	[1.03-1.05]	NR [NR] (imputed)	N
994	chr13	53625780	53625781	rs12552	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	13q14.3	OLFM4	rs12552-?		1E-8				NR [6786993] (imputed)	N
994	chr13	53625780	53625781	rs12552	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	13q14.3		rs12552-A	0.424	4E-8		0.047	[0.029-0.065] unit increase	Illumina [NR] (imputed)	N
994	chr13	53625780	53625781	rs12552	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q14.3		rs12552-A	0.4412	5E-9	(conditional-joint)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
994	chr13	53625780	53625781	rs12552	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q14.3	NR	rs12552-A	NR	2E-10		6.366	z score increase	Affymetrix [10847151] (imputed)	N
994	chr13	53625780	53625781	rs12552	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	13q14.3	OLFM4, LINC01065	rs12552-A	0.44	6E-19		1.04	[1.03-1.05]	NR [9622763] (imputed)	N
994	chr13	53625780	53625781	rs12552	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q14.3	OLFM4	rs12552-A	NR	3E-8		0.016274216	[0.011-0.022] unit increase	Affymetrix [NR]	N
994	chr13	53625780	53625781	rs12552	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	13q14.3	OLFM4	rs12552-G	0.554993	8E-9		0.0433	[0.032-0.055] unit decrease	Illumina [1220000] (imputed)	N
994	chr13	53635836	53635837	rs1891946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs1891946-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
994	chr13	53643369	53643370	rs2806933	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	13q14.3		rs2806933-?	NR	5E-15		0.0236	unit increase	NR [NR]	N
994	chr13	53643369	53643370	rs2806933	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2806933-A	0.3791	3E-6	(Trans-16:1n-7, EA)	0.0025	[0.0015-0.0035] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53644106	53644107	rs2806934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q14.3	Intergenic	rs2806934-A	0.6062	2E-9	(MTAG)	0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
994	chr13	53644106	53644107	rs2806934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q14.3	Intergenic	rs2806934-A	0.6034	2E-11	(MTAG)	0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
994	chr13	53645447	53645448	rs1343607	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	13q14.3	NR	rs1343607-A	0.374666	1E-6		1.0764263	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
994	chr13	53645447	53645448	rs1343607	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs1343607-A	0.3747	2E-6	(Trans-16:1n-7, EA)	0.0026	[0.0016-0.0036] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53645932	53645933	rs2806946	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2806946-A	0.366	1E-6	(Trans-16:1n-7, EA)	0.0026	[0.0016-0.0036] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53646137	53646138	rs2806949	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2806949-A	0.3738	1E-6	(Trans-16:1n-7, EA)	0.0026	[0.0016-0.0036] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53647047	53647048	rs1343605	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	13q14.3	NR	rs1343605-A	0.384	2E-25		1.023	[1.019-1.028]	NR [8098588] (imputed)	N
994	chr13	53647668	53647668	rs11459825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q14.3		rs11459825-CT	NR	3E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
994	chr13	53652127	53652128	rs2246208	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs2246208-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
994	chr13	53652127	53652128	rs2246208	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2246208-T	0.6303	3E-6	(Trans-16:1n-7, EA)	0.0025	[0.0015-0.0035] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53653855	53653856	rs2806971	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2806971-A	0.37	3E-6	(Trans-16:1n-7, EA)	0.0025	[0.0015-0.0035] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53659929	53659930	rs2806974	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q14.3	NR	rs2806974-T	0.6291	3E-6	(Trans-16:1n-7, EA)	0.0025	[0.0015-0.0035] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
994	chr13	53677722	53677723	rs2806985	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q14.3	NR	rs2806985-C	NR	2E-8		5.631	z score increase	Affymetrix [10847151] (imputed)	N
994	chr13	53678904	53678905	rs1923767	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	13q14.3	NR	rs1923767-T	0.4633	1E-9		0.013	[0.0089-0.0171] unit increase	Illumina [NR] (imputed)	N
994	chr13	53679746	53679747	rs1951722	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	13q14.3	NR	rs1951722-A	0.4644	2E-13		0.0175	[0.013-0.022] unit increase	Illumina [NR] (imputed)	N
994	chr13	53683162	53683163	rs1322944	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q14.3	NR	rs1322944-A	NR	2E-9		5.979	z score increase	Affymetrix [10847151] (imputed)	N
994	chr13	53686880	53686881	rs2408766	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	13q14.3	LINC01065	rs2408766-T	0.4523	1E-10				Illumina [5508534] (imputed)	N
994	chr13	53695377	53695378	rs2759694	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	OLFM4, LINC01065	rs2759694-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
995	chr13	53763714	53763715	rs61950116	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B ruminis abundance in stool	5,959 Finnish ancestry individuals	NA	13q14.3		rs61950116-C	0.0110962	5E-9		0.35265	[0.23-0.47] unit increase	Illumina [7980478] (imputed)	N
995	chr13	53763714	53763715	rs61950116	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B abundance in stool	5,959 Finnish ancestry individuals	NA	13q14.3		rs61950116-C	0.0110962	9E-9		0.303348	[0.2-0.41] unit increase	Illumina [7980478] (imputed)	N
995	chr13	53783354	53783355	rs2038648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q14.3		rs2038648-T	NR	3E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
995	chr13	53784082	53784083	rs2491124	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs2491124-T	0.5758	9E-16		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
995	chr13	53786567	53786568	rs1923770	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q14.3	OLFM4/RP11-365K22.1	rs1923770-T	0.383028	1E-12		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
995	chr13	53786567	53786568	rs1923770	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q14.3	OLFM4/RP11-365K22.1	rs1923770-T	0.383028	2E-9		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
995	chr13	53865140	53865141	rs9536382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs9536382-?	NR	7E-9				NR [~ 8900000] (imputed)	N
995	chr13	53865562	53865563	rs9536383	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q14.3	NR	rs9536383-T	0.314332586656566	4E-8		0.0073982985	[0.0048-0.01] unit increase	NR [NR]	N
996	chr13	53879061	53879062	rs4884400	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NA	rs4884400-C	0.4554	3E-21	(Male)	1.0964912	[1.08-1.12]	Affymetrix, Illumina [NR] (imputed)	N
996	chr13	53880787	53880788	rs7997881	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	13q14.3	NR	rs7997881-G	NR	5E-7		0.0103	[0.0063-0.0143] unit decrease	Illumina [~ 540852]	N
996	chr13	53888525	53888526	rs6561715	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	13q14.3	AL450423.1	rs6561715-A	0.3628	2E-11				Illumina [5508534] (imputed)	N
996	chr13	53889000	53889000	rs67128127	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	RN7SL618P, AL450423.1	rs67128127-?	NR	7E-9			[NR]	NR [NR] (imputed)	N
996	chr13	53902875	53902876	rs34003284	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	13q14.3	RN7SL618P, AL450423.1	rs34003284-C	NR	3E-10		0.024	[0.016-0.032] unit decrease	NR [NR] (imputed)	N
996	chr13	53903510	53903511	rs1867368	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	13q14.3	NR	rs1867368-C	0.317	5E-8		1.0330578	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
996	chr13	53917229	53917230	rs1443914	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	RN7SL618P, AL450423.1	rs1443914-?	NR	5E-10			[NR]	NR [NR] (imputed)	N
996	chr13	53917229	53917230	rs1443914	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	AL450423.1	rs1443914-T	0.475	3E-11		0.0162	[0.011-0.021] unit increase	NR [NR]	N
996	chr13	53939598	53939598	rs5803650	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	13q14.3	NR	rs5803650-C	0.4794	6E-14		0.025507946	[0.019-0.032] unit increase	Illumina [9885498] (imputed)	N
996	chr13	53942656	53942657	rs7337692	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NA	rs7337692-T	0.2896	1E-18	(Female)	1.075	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
996	chr13	53968090	53968091	rs10507577	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	13q14.3	intergenic	rs10507577-?	NR	3E-6	(VitD25OH)			Affymetrix [70897]	N
996	chr13	53969795	53969796	rs79204944	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs79204944-A	0.0449	4E-8		1.082	[1.05-1.11]	Affymetrix, Illumina [NR] (imputed)	N
996	chr13	53971827	53971828	rs9536410	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q14.3		rs9536410-C	0.391	5E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
996	chr13	53972784	53972785	rs73184216	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	13q14.3		rs73184216-A	NR	4E-6		3.8022	[2.22-5.38] unit increase	Illumina [NR] (imputed)	N
996	chr13	53978627	53978628	rs9316619	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs9316619-T	0.8249	6E-9		1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
996	chr13	53983444	53983445	rs7987501	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q14.3	LINC01065	rs7987501-G	0.548085	4E-11		0.0138109	[0.0097-0.0179] unit decrease	NR [16516521] (imputed)	N
996	chr13	53989974	53989975	rs7335163	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	AL450423.1, LINC00558	rs7335163-?	NR	7E-9			[NR]	NR [NR] (imputed)	N
996	chr13	53991124	53991125	rs9527083	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs9527083-G	0.3295	2E-32		1.0787487	[1.07-1.09]	Affymetrix, Illumina [NR] (imputed)	N
997	chr13	54018866	54018867	rs117630493	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs117630493-G	0.0274	4E-8		1.1061947	[1.07-1.14]	Affymetrix, Illumina [NR] (imputed)	N
997	chr13	54019092	54019093	rs4883690	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	13q14.3	AL450423.1	rs4883690-G	0.3698	2E-8				Illumina [5508534] (imputed)	N
997	chr13	54035334	54035335	rs4884468	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	13q14.3	NR	rs4884468-G	0.561	1E-8		0.0132652	[0.0087-0.0178] unit decrease	NR [9732723] (imputed)	N
997	chr13	54049488	54049489	rs17574479	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	13q14.3	AL450423.1, LINC00558	rs17574479-?	NR	3E-9			[NR]	NR [NR] (imputed)	N
997	chr13	54049488	54049489	rs17574479	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	13q14.3	NR	rs17574479-C	NR	4E-6		0.009832	[0.0056-0.014] unit decrease	Illumina [~ 540852]	N
997	chr13	54056552	54056553	rs9596810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs9596810-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
997	chr13	54064980	54064981	rs9568856	22484627	Bradfield JP	2012-04-08	Nat Genet	A genome-wide association meta-analysis identifies new childhood  obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	13q14.3	OLFM4	rs9568856-?	NR	2E-9		1.215	[1.140-1.294]	Affymetrix, Illumina [2700000] (imputed)	N
997	chr13	54066895	54066896	rs1927860	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	13q14.3	OLFM4	rs1927860-A	0.6009	4E-9		0.011684407	[0.0078-0.0156] unit decrease	Illumina [9339358] (imputed)	N
997	chr13	54075724	54075725	rs9536442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q14.3	Intergenic	rs9536442-C	0.8789	2E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
997	chr13	54076183	54076184	rs9568859	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q14.3	RP11-384G23.1	rs9568859-A	0.8637	6E-6		0.0447	[0.025-0.064] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
997	chr13	54076183	54076184	rs9568859	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q14.3	RP11-384G23.1	rs9568859-A	0.8637	6E-6		0.0447	[0.025-0.064] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
997	chr13	54084031	54084032	rs4883723	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	OLFM4	rs4883723-A	0.1454	7E-8	(EA, men)	0.0387	[0.025-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
997	chr13	54084031	54084032	rs4883723	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	OLFM4	rs4883723-A	0.1454	5E-10	(EA)	0.0319	[0.022-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
997	chr13	54089259	54089260	rs9527094	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q14.3	Intergenic	rs9527094-A	0.5708	3E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
997	chr13	54098397	54098398	rs1927855	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs1927855-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q14.3	OLFM4	rs12429545-G	0.870646	1E-22		0.0206347	[0.017-0.025] unit decrease	Affymetrix [12370749]	N
997	chr13	54102205	54102206	rs12429545	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q14.3	OLFM4	rs12429545-G	0.870646	3E-22		0.0200311	[0.016-0.024] unit decrease	Affymetrix [12370749]	N
997	chr13	54102205	54102206	rs12429545	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	13q14.3	NR	rs12429545-?	NR	2E-8		0.04890055	[0.032-0.066] unit increase	Illumina [32062178] (imputed)	N
997	chr13	54102205	54102206	rs12429545	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q14.3	NA	rs12429545-A	0.1218	1E-37		0.0313	[0.027-0.036] unit increase	NR [~ 27400000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q14.3	NA	rs12429545-A	0.1218	1E-37		0.0313	[0.027-0.036] unit increase	NR [~ 27400000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q14.3	NA	rs12429545-A	0.1218	1E-37		0.0313	[0.027-0.036] unit increase	NR [~ 27400000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q14.3	NR	rs12429545-G	NR	5E-18		0.032	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
997	chr13	54102205	54102206	rs12429545	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	13q14.3	OLFM4	rs12429545-A		1E-7		0.0063	unit increase	Illumina [at least 200000]	N
997	chr13	54102205	54102206	rs12429545	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q14.3	LINC01065, LINC00558	rs12429545-A	0.12	1E-24		0.032	[0.026-0.038] unit increase	Illumina [6108953] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-?	NR	8E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-?	NR	5E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-?	NR	1E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-A	0.1325	5E-8		0.0292	[0.019-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-A	0.1325	4E-6	(women)	0.0319	[0.018-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-A	0.1319	4E-8	(EA)	0.031	[0.02-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	13q14.3	RP11-365K22.1, OLFM4	rs12429545-A	0.1319	3E-6	(EA, women)	0.034	[0.02-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q14.3	OLFM4	rs12429545-A	0.1374	3E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q14.3	OLFM4	rs12429545-A	0.1374	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	13q14.3	OLFM4	rs12429545-A	0.1374	6E-8		0.0313	[0.02-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q14.3	OLFM4	rs12429545-A	0.1374	4E-9		0.0296	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q14.3	OLFM4	rs12429545-A	0.1374	2E-6	(women)	0.0329	[0.019-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	13q14.3	OLFM4	rs12429545-A	NR	7E-6	(additive model)	0.028	[0.016-0.04] unit increase	NR [9288881] (imputed)	N
997	chr13	54102205	54102206	rs12429545	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	13q14.3	OLFM4	rs12429545-A	0.13	2E-14		0.076	[0.056-0.096] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
997	chr13	54102205	54102206	rs12429545	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	13q14.3	NR	rs12429545-A	0.133208977081223	7E-17		0.033930767	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	13q14.3	OLFM4	rs12429545-A	0.128	6E-9	(age 1-17)			Illumina [~ 2200000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	13q14.3	OLFM4	rs12429545-A	0.128	1E-8	(age 8)	0.018	[0.012-0.024] unit increase	Illumina [~ 2200000] (imputed)	N
997	chr13	54102205	54102206	rs12429545	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q14.3	OLFM4	rs12429545-A	0.135	3E-13		0.032	[0.024-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
997	chr13	54102205	54102206	rs12429545	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q14.3	OLFM4	rs12429545-A	0.134	9E-8	(EA, women)	0.032	[0.02-0.044] kg/m2 increase	Affymetrix, Illumina [2550021]	N
997	chr13	54102205	54102206	rs12429545	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q14.3	OLFM4	rs12429545-A	0.133	2E-8	(EA, men)	0.035	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina [2550021]	N
997	chr13	54102205	54102206	rs12429545	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q14.3	OLFM4	rs12429545-A	0.133	1E-12	(EA)	0.033	[0.024-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
997	chr13	54102205	54102206	rs12429545	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	OLFM4	rs12429545-A	0.134	3E-6	(EA, men)	0.0336	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
997	chr13	54102205	54102206	rs12429545	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q14.3	OLFM4	rs12429545-A	0.134	2E-9	(EA)	0.0309	[0.021-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
997	chr13	54104967	54104968	rs4477562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q14.3		rs4477562-T	NR	7E-32		0.0264	[0.022-0.031] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
997	chr13	54104967	54104968	rs4477562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q14.3		rs4477562-T	NR	3E-27		0.0279	[0.023-0.033] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
997	chr13	54104967	54104968	rs4477562	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	13q14.3	LINC00558	rs4477562-T	0.13	8E-13		0.08	[0.058-0.102] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
997	chr13	54104967	54104968	rs4477562	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs4477562-?	NR	4E-24				Affymetrix [~ 8270000] (imputed)	N
997	chr13	54104967	54104968	rs4477562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs4477562-?	NR	1E-24				NR [~ 8900000] (imputed)	N
997	chr13	54104967	54104968	rs4477562	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q14.3	RP11-384G23.1	rs4477562-T	0.1301	5E-9		0.0556	[0.037-0.074] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
997	chr13	54104967	54104968	rs4477562	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	13q14.3	RP11-384G23.1	rs4477562-T	0.1301	3E-8		0.0527	[0.034-0.072] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
997	chr13	54107351	54107352	rs9568867	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	13q14.3	NR	rs9568867-?	NR	3E-8		0.04846094	[0.031-0.066] unit increase	Illumina [32062178] (imputed)	N
997	chr13	54107351	54107352	rs9568867	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q14.3	LINC01065, LINC00558	rs9568867-A	0.225	1E-14	(Japanese)	0.031	[0.023-0.039] unit increase	Illumina [6108953] (imputed)	N
997	chr13	54107351	54107352	rs9568867	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	13q14.3	OLFM4	rs9568867-A	0.23	4E-6		0.031	[0.018-0.044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
997	chr13	54107351	54107352	rs9568867	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	13q14.3	OLFM4	rs9568867-A	0.13	2E-9	(Obesity class II)	1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
997	chr13	54107582	54107583	rs9568868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	13q14.3		rs9568868-T	0.223636	2E-15		0.0259267	[0.02-0.032] unit increase	Illumina [13479924] (imputed)	N
997	chr13	54107582	54107583	rs9568868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	13q14.3		rs9568868-T	0.223959	2E-14		0.0292359	[0.022-0.037] unit increase	Illumina [13479178] (imputed)	N
997	chr13	54107582	54107583	rs9568868	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q14.3	NR	rs9568868-G	0.8396	6E-11		0.035	[0.025-0.045] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
997	chr13	54124649	54124650	rs9536462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q14.3	Intergenic	rs9536462-A	0.1398	4E-12	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
997	chr13	54124649	54124650	rs9536462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q14.3		rs9536462-A	0.1454	2E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
997	chr13	54124649	54124650	rs9536462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q14.3	Intergenic	rs9536462-A	0.1454	4E-14	(MTAG)	0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
997	chr13	54131915	54131916	rs55949311	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	13q14.3	LINC00558	rs55949311-?	0.01	8E-9		9.7	[NR]	Affymetrix [4893794] (imputed)	N
997	chr13	54132246	54132247	rs9536463	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	13q14.3	Intergenic	rs9536463-A	0.95	2E-6		0.112	NR unit decrease	Illumina [NR] (imputed)	N
998	chr13	54137748	54137749	rs150841795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	13q14.3	Intergenic	rs150841795-A	0.05	3E-6		0.112	NR unit increase	Illumina [NR] (imputed)	N
998	chr13	54150906	54150907	rs7328626	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	13q14.3	LINC00558	rs7328626-?	0.01	8E-9		9.7	[NR]	Affymetrix [4893794] (imputed)	N
998	chr13	54192029	54192030	rs9536482	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	PCDH8	rs9536482-?	NR	5E-6	(5-hydroxyindoleacetic acid)	0.20539404	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
998	chr13	54247826	54247827	rs9563168	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	13q14.3	NR	rs9563168-?		4E-11		0.0175868	[0.012-0.023] unit increase	Affymetrix [19400418] (imputed)	N
998	chr13	54247826	54247827	rs9563168	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q14.3		rs9563168-A	0.2117	4E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
998	chr13	54258062	54258063	rs9596837	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	13q14.3	LINC00558	rs9596837-?	0.01	4E-9		10.1	[NR]	Affymetrix [4893794] (imputed)	N
999	chr13	54290332	54290333	rs2806731	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q14.3	OLFM4	rs2806731-G	0.202	5E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
999	chr13	54319326	54319327	rs7321285	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q14.3	OLFM4	rs7321285-A	0.200937	4E-11		0.0113478	[0.008-0.0147] unit increase	Affymetrix [12370749]	N
999	chr13	54319326	54319327	rs7321285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q14.3	Intergenic	rs7321285-A	0.2	6E-9	(MTAG)	0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
999	chr13	54342122	54342123	rs111530150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q14.3		rs111530150-T	0.0228	2E-8		0.0269	[0.017-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
999	chr13	54342122	54342123	rs111530150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q14.3	Intergenic	rs111530150-T	0.0228	1E-9	(MTAG)	0.027	[0.018-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
999	chr13	54363001	54363002	rs9568926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q14.3	Intergenic	rs9568926-A	0.1983	1E-11	(MTAG)	0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
999	chr13	54363001	54363002	rs9568926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q14.3	Intergenic	rs9568926-C	0.8017	5E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
999	chr13	54379456	54379457	rs4632022	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	PCDH8	rs4632022-?	NR	5E-6	(fructose; glucose; galactose)	0.22225581	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
999	chr13	54382034	54382035	rs1031654	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q14.3	LOC100133285/RP11-365K22.1	rs1031654-C	0.201527	1E-9		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
999	chr13	54382034	54382035	rs1031654	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q14.3	LOC100133285/RP11-365K22.1	rs1031654-C	0.201527	4E-7		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
999	chr13	54382034	54382035	rs1031654	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs1031654-C	0.2004	4E-12		1.0526316	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
999	chr13	54382034	54382035	rs1031654	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NA	rs1031654-C	0.2089	1E-9	(Female)	1.0570824	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
999	chr13	54388051	54388052	rs17088934	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q14.3	NR	rs17088934-?	NR	2E-6				Affymetrix [NR]	N
999	chr13	54389798	54389799	rs149504888	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	13q14.3	NR	rs149504888-?	NR	5E-7		5.4388	[0.053-10.824] unit decrease	Illumina [at least 560000] (imputed)	N
999	chr13	54392410	54392411	rs17088940	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q14.3	PCDH8	rs17088940-?	NR	2E-6	(5-hydroxyindoleacetic acid)	0.2213004	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1000	chr13	54396601	54396602	rs1379828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs1379828-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1000	chr13	54413852	54413853	rs114375292	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	13q14.3	LINC00558	rs114375292-?		7E-7	(French Canadians)	2.7747948		Illumina [7614484] (imputed)	N
1000	chr13	54434646	54434647	rs9596863	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	13q14.3	LINC00558	rs9596863-G	0.01	8E-11		15.2	[NR]	Affymetrix [4893794] (imputed)	N
1000	chr13	54435236	54435237	rs6561750	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q14.3	NR	rs6561750-?	NR	9E-6		1.2266	[NR]	Affymetrix [722112]	N
1000	chr13	54453810	54453811	rs7982447	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs7982447-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1000	chr13	54453810	54453811	rs7982447	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	13q14.3	NR	rs7982447-C	0.2051	2E-11		0.020753935	[0.015-0.027] unit increase	Affymetrix [10549349] (imputed)	N
1001	chr13	54547573	54547574	rs147182487	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	13q14.3	LINC00558	rs147182487-?		3E-6		2.35	unit increase	Illumina [4751257] (imputed)	N
1001	chr13	54581086	54581087	rs9536591	17434096	Matarin M	2007-05-06	Lancet Neurol	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	249 European ancestry cases, 268 European ancestry controls	NA	13q14.3	intergenic	rs9536591-?	0.10	6E-6		1.92	[1.41-2.63]	Illumina [408803]	N
1001	chr13	54593716	54593717	rs73197788	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q14.3	NR	rs73197788-?	NR	2E-6	(Japanese)	0.7369	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1001	chr13	54615772	54615773	rs9316695	31597885	Nakano MH	2019-10-09	Biol Pharm Bull	A Genome-Wide Association Study Identifies Five Novel Genetic Markers for Trastuzumab-Induced Cardiotoxicity in Japanese Population.	Trastuzumab-induced cardiotoxicity in cancer	11 Japanese ancestry cases, 257 Japanese ancestry controls	14 Japanese ancestry cases, 199 Japanese ancestry controls	13q14.3	NR	rs9316695-A	0.12	6E-6		4.46	[2.30-8.47]	Illumina [543807]	N
1001	chr13	54633372	54633373	rs9596905	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	13q14.3	LINC00458	rs9596905-A	0.06	2E-6	(IGF2-DMR)			Illumina [515966]	N
1002	chr13	54691441	54691442	rs2576135	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q14.3	OLFM4	rs2576135-T	0.0929638	4E-8		0.0131674	[0.0085-0.0178] unit increase	Affymetrix [12370749]	N
1002	chr13	54691483	54691484	rs6561766	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs6561766-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1002	chr13	54691483	54691484	rs6561766	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q14.3	NA	rs6561766-A	0.1301	7E-11		0.0175	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
1002	chr13	54708943	54708944	rs4883855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs4883855-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1002	chr13	54721698	54721699	rs7992992	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q14.3	NR	rs7992992-A	0.1286	1E-8		1.052	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1002	chr13	54748665	54748666	rs9536647	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q14.3	NR	rs9536647-T	0.05052	2E-8	(AGT)	0.03503	NR unit increase	Illumina [1671387] (imputed)	N
1002	chr13	54756073	54756074	rs564930	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q14.3	NA	rs564930-T	0.1229	2E-11		0.0202	[0.014-0.026] unit increase	NR [~ 27400000] (imputed)	N
1003	chr13	54806822	54806823	rs142698558	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q14.3	NR	rs142698558-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1003	chr13	54828960	54828961	rs7995015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q14.3		rs7995015-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1004	chr13	54929197	54929198	rs2785946	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	13q14.3	intergenic	rs2785946-A	0.264	8E-7		2.291	[NR]	Affymetrix [633420]	N
1005	chr13	55073056	55073057	rs1807797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q14.3		rs1807797-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1005	chr13	55076957	55076958	rs117179287	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q14.3	NR	rs117179287-?	NR	2E-6		6298.841	NR unit decrease	Illumina [2379855]	N
1005	chr13	55143425	55143426	rs1360935	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	13q14.3	NR	rs1360935-?	NR	2E-6	(AA)	3.7037036	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1006	chr13	55232585	55232586	rs80323129	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	13q14.3	NR	rs80323129-A	0.0112	5E-7		3.3782	[2.06-4.69] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1006	chr13	55232585	55232586	rs80323129	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q14.3	NR	rs80323129-A	0.0112	5E-7		3.3782	[2.06-4.69] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1006	chr13	55244855	55244856	rs1471450	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	13q14.3	intergenic	rs1471450-G	0.25	2E-6	(AA)	0.789	unit increase	Illumina [at least 5086170] (imputed)	N
1007	chr13	55314924	55314925	rs188360948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.1	Intergenic	rs188360948-T	0.949	2E-6	(AA)	0.043	unit decrease	Illumina [NR] (imputed)	N
1007	chr13	55391809	55391810	rs9569097	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q21.1	intergenic	rs9569097-T	0.123991474443137	2E-6	(C_Gammaproteobacteria_HB)	0.455928	[0.27-0.64] unit decrease	Illumina [7711310] (imputed)	N
1007	chr13	55400706	55400707	rs35135828	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	13q21.1	AL512655.1	rs35135828-G	0.8585	3E-6		0.0451	[0.026-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1008	chr13	55457501	55457502	rs75104126	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	13q21.1	intergenic	rs75104126-C	0.878	3E-6	(AA)	1.011	unit decrease	Illumina [at least 5086170] (imputed)	N
1008	chr13	55466382	55466383	rs145461961	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	13q21.1	NR	rs145461961-T	0.979	7E-6		0.067795515	[0.038-0.097] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1008	chr13	55489004	55489005	rs1116255	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	13q21.1	intergenic	rs1116255-?	NR	5E-6	EA	2.19	[NR]	Illumina [up to 5616481] (imputed)	N
1009	chr13	55602782	55602783	rs1028772	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.1	Intergenic	rs1028772-A	0.63	4E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1009	chr13	55627480	55627481	rs12428820	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q21.1	NR	rs12428820-A	0.07	4E-6		0.30272	[0.17-0.43] unit increase	Illumina [~ 6600000] (imputed)	N
1009	chr13	55678331	55678332	rs9536961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q21.1		rs9536961-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1009	chr13	55687062	55687063	rs12866091	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q21.1	NR	rs12866091-?	NR	8E-6				Illumina [NR] (imputed)	N
1009	chr13	55690571	55690572	rs9536965	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q21.1	NR	rs9536965-?	NR	6E-6				Illumina [NR] (imputed)	N
1009	chr13	55702645	55702646	rs4580037	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	13q21.1		rs4580037-?	NR	2E-9		0.0135627	[0.0092-0.018] unit decrease	NR [6912294] (imputed)	N
1009	chr13	55703217	55703218	rs9569206	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q21.1	NR	rs9569206-A	NR	5E-8		5.457	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1010	chr13	55705805	55705806	rs36180537	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q21.1	NR	rs36180537-T	NR	2E-6	(GEE model)	0.88672	[0.52-1.26] unit decrease	NR [NR] (imputed)	N
1010	chr13	55721846	55721847	rs9597121	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs9597121-?	NR	5E-6		4.58	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1010	chr13	55722032	55722033	rs12875339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.1	Intergenic	rs12875339-A	0.6445	2E-18	(MTAG)	0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1010	chr13	55722032	55722033	rs12875339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs12875339-A	0.6449	2E-13		0.0108	[0.0079-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1010	chr13	55722032	55722033	rs12875339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs12875339-A	0.6449	5E-18	(MTAG)	0.0118	[0.0091-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1010	chr13	55724075	55724076	rs3120852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.1	Intergenic	rs3120852-A	0.4916	1E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1010	chr13	55728750	55728751	rs7334060	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	13q21.1	NR	rs7334060-T	0.357385	5E-8		5.47	z score increase	NR [10847151] (imputed)	N
1010	chr13	55759208	55759209	rs115539978	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	13q21.1	NR	rs115539978-T	NR	3E-8	(African)	1.33	[1.20-1.47]	Affymetrix, Illumina [~ 1175791] (imputed)	N
1010	chr13	55769144	55769145	rs4884166	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	13q21.1	NR	rs4884166-A	0.1984	1E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1010	chr13	55783041	55783042	rs9527336	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	13q21.1	NR	rs9527336-A	0.277238	2E-9		5.99	z score decrease	NR [~ 10847151] (imputed)	N
1010	chr13	55783041	55783042	rs9527336	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	13q21.1	NR	rs9527336-A	0.277238	4E-9		5.89	z score decrease	NR [10847151] (imputed)	N
1010	chr13	55786954	55786955	rs9569233	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.1	Intergenic	rs9569233-A	0.3542	5E-13	(MTAG)	0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1010	chr13	55816141	55816142	rs9527342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q21.1	Intergenic	rs9527342-C	0.6418	2E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1010	chr13	55822470	55822471	rs7329873	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.1		rs7329873-C	0.709	4E-16		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1010	chr13	55822734	55822735	rs9527345	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	13q21.1	MIR5007	rs9527345-C	NR	2E-8		0.0076671	[0.005-0.0103] unit decrease	Affymetrix [18485882] (imputed)	N
1010	chr13	55834928	55834929	rs61959481	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	13q21.1	MIR5007, PRR20D	rs61959481-A		3E-8		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
1010	chr13	55834928	55834929	rs61959481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.1	NR	rs61959481-A	0.21	3E-15		0.0105913	[0.008-0.0132] unit decrease	NR [9732723] (imputed)	N
1010	chr13	55834928	55834929	rs61959481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.1	NR	rs61959481-A	0.21	8E-11		0.0203442	[0.014-0.026] unit decrease	NR [~ 10000000] (imputed)	N
1011	chr13	55845384	55845385	rs7997034	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.1	Intergenic	rs7997034-T	0.6419	9E-13	(MTAG)	0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1011	chr13	55852518	55852519	rs7325545	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q21.1	NR	rs7325545-T	0.068	6E-6	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
1011	chr13	55888920	55888921	rs570382832	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	13q21.1	MIR5007	rs570382832-T	0.998	1E-6		0.5261	[0.31-0.74] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1011	chr13	55888920	55888921	rs570382832	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	13q21.1	MIR5007	rs570382832-T	0.9979	4E-6		0.4976	[0.28-0.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1011	chr13	55931423	55931424	rs3098272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.1	NR	rs3098272-C	0.798794	2E-8	(Conditioned on chr13:55834929)	0.017808221	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1011	chr13	55931657	55931658	rs7988208	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.1	NR	rs7988208-C	0.797	9E-15		0.010378	[0.0078-0.013] unit decrease	NR [9732723] (imputed)	N
1011	chr13	55937345	55937346	rs3124426	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	13q21.1	NR	rs3124426-C	NR	2E-8		0.01577	NR unit increase	NR [7259579]	N
1011	chr13	55937345	55937346	rs3124426	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.1	NR	rs3124426-T	NR	1E-8		5.691	z score decrease	Affymetrix [10847151] (imputed)	N
1011	chr13	55937345	55937346	rs3124426	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q21.1	NR	rs3124426-T	0.230468	2E-8		5.62	z score decrease	NR [10847151] (imputed)	N
1011	chr13	55937826	55937827	rs150236091	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	13q21.1	intergenic	rs150236091-?	NR	1E-9		0.0166706	[0.011-0.022] unit increase	Affymetrix [25921788] (imputed)	N
1011	chr13	55938448	55938449	rs1370063	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	intergenic	rs1370063-?	NR	9E-12	(male)	0.0277963	[0.02-0.036] unit increase	Affymetrix [25921788] (imputed)	N
1011	chr13	55938448	55938449	rs1370063	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	intergenic	rs1370063-?	NR	2E-18		0.0240792	[0.019-0.029] unit increase	Affymetrix [25921788] (imputed)	N
1011	chr13	55946151	55946152	rs3105056	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	13q21.1	intergenic	rs3105056-?	NR	4E-18		0.00776034	[0.0024-0.0131] unit increase	Affymetrix [25921788] (imputed)	N
1011	chr13	55946151	55946152	rs3105056	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	13q21.1	intergenic	rs3105056-?	NR	4E-18		0.0237366	[0.018-0.029] unit increase	Affymetrix [25921788] (imputed)	N
1011	chr13	55952683	55952684	rs12872990	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	13q21.1		rs12872990-A	0.293198	4E-8		0.0247993	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1011	chr13	55952683	55952684	rs12872990	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	13q21.1	MIR5007	rs12872990-A	0.2455	2E-6		0.012257694	[0.0065-0.018] unit increase	NR [9417325] (imputed)	N
1012	chr13	55970996	55970997	rs3124405	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	13q21.1	NR	rs3124405-T	0.277105	9E-11		6.48	z score decrease	NR [~ 10847151] (imputed)	N
1012	chr13	55984995	55984996	rs2315885	24001895	Kelly TN	2013-09-03	Hypertension	Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci.	Blood pressure	22,275 East Asian ancestry individuals, 4,325 South East Asian ancestry individuals	28,783 East Asian ancestry individuals	13q21.1	MIR5007	rs2315885-T	0.06	2E-6	(PP)	1.41	[0.84-1.98] mm of mercury increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1012	chr13	55985611	55985612	rs3124377	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	13q21.1	NR	rs3124377-C	NR	3E-8		0.01491	[0.0096-0.0202] unit increase	Affymetrix [10847151] (imputed)	N
1012	chr13	55998647	55998648	rs2937336	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	13q21.1	NR	rs2937336-A	0.278423	1E-8		5.71	z score decrease	NR [10847151] (imputed)	N
1012	chr13	56009893	56009894	rs2860457	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q21.1		rs2860457-T	0.7895	1E-13		1.0336		Affymetrix [11880941] (imputed)	N
1012	chr13	56021974	56021975	rs9597183	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q21.1	NR	rs9597183-T	0.07	9E-6	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
1012	chr13	56052508	56052509	rs150688177	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	13q21.1	NR	rs150688177-G	0.01101	2E-6		0.6895	[0.4-0.97] unit decrease	Illumina [10677593] (imputed)	N
1012	chr13	56068606	56068607	rs4378518	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	13q21.1		rs4378518-C	NR	4E-6		0.0945	[0.054-0.135] unit decrease	NR [4841651] (imputed)	N
1012	chr13	56069704	56069705	rs9563335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	13q21.1		rs9563335-A	0.138428	8E-9		0.0444873	[0.029-0.06] unit increase	NR [11722792] (imputed)	N
1012	chr13	56069704	56069705	rs9563335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	13q21.1		rs9563335-A	0.138428	9E-9		0.0446766	[0.029-0.06] unit increase	NR [11722792] (imputed)	N
1012	chr13	56081391	56081392	rs9316807	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	intergenic	rs9316807-?	NR	1E-8	(female)	0.022172	[0.015-0.03] unit increase	Affymetrix [25921788] (imputed)	N
1013	chr13	56109837	56109838	rs9537160	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	13q21.1	MIR2113	rs9537160-C	0.721695	2E-10	(EA)	0.00877585	[0.0061-0.0115] unit increase	Affymetrix [~ 8800000] (imputed)	N
1013	chr13	56122738	56122739	rs1494214	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs1494214-?	NR	8E-6		4.473	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1013	chr13	56135111	56135112	rs631140	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	13q21.1	NR	rs631140-A	0.275694	4E-10		6.27	z score increase	NR [~ 10847151] (imputed)	N
1013	chr13	56156902	56156903	rs189596490	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q21.1	NR	rs189596490-?	NR	6E-6				Illumina [NR] (imputed)	N
1013	chr13	56159008	56159009	rs9527419	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	13q21.1	intergenic	rs9527419-?		6E-6				NR [~ 3000000] (imputed)	N
1013	chr13	56204044	56204045	rs988257	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	13q21.1	NR	rs988257-A	0.27031	4E-8		5.48	z score decrease	NR [10847151] (imputed)	N
1013	chr13	56214399	56214400	rs651636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	13q21.1	NR	rs651636-T	0.802	4E-11		0.0120397	[0.0085-0.0156] unit increase	NR [9732723] (imputed)	N
1014	chr13	56238870	56238871	rs57840627	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q21.1	NR	rs57840627-?	NR	8E-6				Illumina [NR] (imputed)	N
1014	chr13	56275514	56275515	rs17592462	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	13q21.1	NR	rs17592462-T	0.188907	1E-8		5.73	z score increase	NR [~ 10847151] (imputed)	N
1014	chr13	56281270	56281271	rs9597241	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q21.1		rs9597241-A	0.8106	9E-14		1.0344		Affymetrix [11880941] (imputed)	N
1014	chr13	56281270	56281271	rs9597241	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.1	intergenic	rs9597241-A	0.8106	9E-14		1.0337573		Affymetrix [11880941] (imputed)	N
1014	chr13	56281270	56281271	rs9597241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	13q21.1		rs9597241-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1014	chr13	56303708	56303709	rs9597250	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q21.1		rs9597250-A	0.188	3E-12		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1014	chr13	56314964	56314965	rs2252932	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	13q21.1	MIR5007	rs2252932-A	0.7384	2E-6	(AA)			Illumina [NR] (imputed)	N
1014	chr13	56325290	56325291	rs9597253	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	13q21.1		rs9597253-?	NR	7E-9				NR [7857346] (imputed)	N
1014	chr13	56325336	56325337	rs9597254	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	HNF4GP1	rs9597254-A	NR	9E-12		6.817	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1015	chr13	56378423	56378424	rs2997105	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	13q21.1	intergenic	rs2997105-?		4E-6				NR [~ 3000000] (imputed)	N
1015	chr13	56393899	56393900	rs2997119	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	13q21.1	MIR5007	rs2997119-?	NR	3E-7	(EA)			Illumina [4404269] (imputed)	N
1015	chr13	56398285	56398286	rs75961402	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	13q21.1	PRR20A	rs75961402-G	0.8466	2E-10		0.2659	[0.18-0.35] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1015	chr13	56411438	56411439	rs117935913	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q21.1	NR	rs117935913-?	NR	3E-6		7633.5864	NR unit decrease	Illumina [2379855]	N
1015	chr13	56465596	56465597	rs9527455	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.1	NA	rs9527455-A	0.2325	2E-9		0.0121	[0.0082-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1015	chr13	56470840	56470841	rs2801617	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass (MTAG)	19,260 European ancestry individuals	NA	13q21.1	PRR20A	rs2801617-C	0.0754	8E-6		1.0105	[0.57-1.45] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1015	chr13	56470840	56470841	rs2801617	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume (MTAG)	19,260 European ancestry individuals	NA	13q21.1	PRR20A	rs2801617-C	0.0754	2E-6		1.2153	[0.71-1.72] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1015	chr13	56470840	56470841	rs2801617	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume (MTAG)	19,260 European ancestry individuals	NA	13q21.1	PRR20A	rs2801617-C	0.0754	1E-8		2.5197	[1.65-3.39] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1016	chr13	56548942	56548943	rs118137757	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	13q21.1		rs118137757-?	NR	2E-7		0.7032492	[0.44-0.97] unit decrease	Illumina [9906551] (imputed)	N
1016	chr13	56548942	56548943	rs118137757	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	13q21.1		rs118137757-?	NR	7E-7		0.7096201	[0.43-0.99] unit decrease	Illumina [9901720] (imputed)	N
1016	chr13	56577179	56577180	rs144509677	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	13q21.1	NR	rs144509677-A	0.008941	1E-6		0.7881	[0.47-1.1] unit decrease	Illumina [10677593] (imputed)	N
1016	chr13	56590134	56590135	rs396318	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	13q21.1	intergenic	rs396318-G	0.129	3E-6		0.247	[NR] unit increase	Illumina [625127]	N
1018	chr13	56761627	56761628	rs146723370	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	13q21.1	NR	rs146723370-T	0.007798	1E-6		0.8428	[0.51-1.18] unit decrease	Illumina [10677593] (imputed)	N
1018	chr13	56772695	56772696	rs1512651	20833655	Cha PC	2010-09-10	Hum Mol Genet	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 Japanese ancestry low dose individuals, 701 Japanese ancestry high dose individuals	444 Japanese ancestry individuals	13q21.1	NR	rs1512651-?	NR	6E-6				Illumina [485227]	N
1018	chr13	56810579	56810580	rs9569447	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	13q21.1	PCDH17	rs9569447-T	0.64648980829434	8E-6		0.0025101	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1018	chr13	56832271	56832272	rs1335882	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q21.1	NR	rs1335882-T	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1019	chr13	56948259	56948260	rs71428218	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	13q21.1	NR	rs71428218-?	NR	6E-10		1.0711111	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1019	chr13	56988083	56988084	rs4885968	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs4885968-?	NR	4E-6		4.598	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1020	chr13	57112723	57112724	rs953618	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	13q21.1		rs953618-G	0.398041	3E-8		0.0222806	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1020	chr13	57119252	57119253	rs117093004	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	13q21.1	NR	rs117093004-?		5E-7	(PCB170)	1.64	[0.99-2.29] unit decrease	Illumina [8736858] (imputed)	N
1020	chr13	57128453	57128454	rs10781829	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	13q21.1	NA	rs10781829-T	0.6242	4E-6		0.0364	[0.022-0.051] unit decrease	Affymetrix, Illumina [27843817] (imputed)	N
1021	chr13	57158631	57158632	rs12427622	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	ENSG00000238455	rs12427622-T	NR	3E-8		0.02029624	[0.013-0.028] unit increase	Affymetrix [NR]	N
1021	chr13	57160554	57160555	rs75921238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q21.1		rs75921238-A	NR	7E-10		0.0615	[0.042-0.081] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1021	chr13	57160554	57160555	rs75921238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	13q21.1		rs75921238-A	0.021429	7E-10		0.0615337	[0.042-0.081] unit decrease	Illumina [13479924] (imputed)	N
1021	chr13	57160554	57160555	rs75921238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q21.1		rs75921238-A	NR	4E-9		0.069	[0.046-0.092] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1021	chr13	57160554	57160555	rs75921238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	13q21.1		rs75921238-A	0.021476	4E-9		0.0689607	[0.046-0.092] unit decrease	Illumina [13479178] (imputed)	N
1021	chr13	57185215	57185216	rs117189591	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q21.1	NR	rs117189591-?	NR	4E-12		15740.972	NR unit decrease	Illumina [2379855]	N
1021	chr13	57263197	57263198	rs61960827	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.1		rs61960827-A	0.912	3E-11		0.015	[0.011-0.019] unit decrease	NR [NR] (imputed)	N
1021	chr13	57267104	57267105	rs61960829	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q21.1	intergenic	rs61960829-G	0.940844	4E-9		0.0254908	[0.017-0.034] unit increase	NR [16516521] (imputed)	N
1022	chr13	57380416	57380417	rs75762663	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	13q21.1	PRR20E	rs75762663-A	0.99	5E-7	(BDRBASE, AA)	19.22	[11.77-26.67] unit decrease	Illumina [NR] (imputed)	N
1023	chr13	57477705	57477706	rs113720505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs113720505-A	0.0659	2E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1023	chr13	57488227	57488228	rs112959610	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	13q21.1	RN7SKP6, PRR20A	rs112959610-A	0.465	3E-8				Illumina [5088365] (imputed)	N
1023	chr13	57522538	57522539	rs9537514	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	13q21.1	PRR20	rs9537514-T	0.21	4E-6		0.11	[0.071-0.149] unit increase	Illumina [~ 6300000] (imputed)	N
1023	chr13	57529601	57529602	rs9527561	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	13q21.1	intergenic	rs9527561-A	0.46	2E-6		0.21	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
1023	chr13	57538350	57538351	rs73512407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs73512407-A	0.2584	5E-9	(MTAG)	0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1024	chr13	57601900	57601900	rs548509555	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	13q21.1	MIR5007, PRR20B	rs548509555-TA	0.2	8E-9		0.032	NR unit increase	Illumina [9591901] (imputed)	N
1026	chr13	57923456	57923457	rs9527647	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.1	NR	rs9527647-?	NR	5E-8				Affymetrix [NR]	N
1026	chr13	57926433	57926434	rs6561930	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Subscapular skin fold thickness	8,842 Korean ancestry individuals	NA	13q21.1	LOC100131027	rs6561930-?		3E-7				NR [327872]	N
1027	chr13	57994709	57994710	rs17649135	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lower facial height	2,447 European ancestry individuals	671 European ancestry individuals	13q21.1	Intergenic	rs17649135-A	0.03004	1E-7		1.428	[0.82-2.03] unit increase	Illumina [34985077] (imputed)	N
1027	chr13	58020264	58020265	rs9527662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs9527662-A	0.4193	3E-11		0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1027	chr13	58020264	58020265	rs9527662	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs9527662-A	0.4193	2E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1027	chr13	58037031	58037032	rs77370942	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs77370942-A	0.0751	4E-8		0.0147	[0.0094-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr13	58114747	58114748	rs11840092	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	13q21.1	NR	rs11840092-C	0.16	2E-6		1.37	[1.23-1.51]	Illumina [4058415] (imputed)	N
1029	chr13	58225616	58225617	rs113943071	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PCDH17	rs113943071-?	NR	1E-8		0.705935	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1029	chr13	58248731	58248732	rs8002164	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q21.1	NR	rs8002164-A	0.16	8E-6		1.12	[1.06-1.18]	Illumina [8468885] (imputed)	N
1029	chr13	58252800	58252801	rs7319102	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	13q21.1	NR	rs7319102-G	0.229438	7E-12		0.0168431	[0.012-0.022] unit increase	NR [NR]	N
1029	chr13	58252800	58252801	rs7319102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs7319102-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1029	chr13	58252800	58252801	rs7319102	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q21.1	PCDH17	rs7319102-?	NR	1E-15		0.020173358	[0.015-0.025] unit increase	NR [7306098]	N
1029	chr13	58252800	58252801	rs7319102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.1		rs7319102-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1029	chr13	58257164	58257165	rs7997462	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	13q21.1	PCDH17	rs7997462-?	NR	2E-6		0.0299	[0.018-0.042] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1029	chr13	58257666	58257667	rs6561937	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	13q21.1	NR	rs6561937-T	0.2478	7E-10		0.017751683	[0.012-0.023] unit increase	Affymetrix [10549349] (imputed)	N
1029	chr13	58263289	58263290	rs4353386	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	NR	rs4353386-?	NR	5E-8		0.0094812	[0.0061-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
1029	chr13	58266221	58266222	rs6561938	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	PCDH17	rs6561938-T	NR	2E-9		0.019308496	[0.013-0.026] unit increase	Affymetrix [NR]	N
1029	chr13	58271460	58271461	rs142747148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs142747148-A	0.9811	3E-10		0.0329	[0.023-0.043] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr13	58276364	58276365	rs7984442	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	PCDH17	rs7984442-A	NR	1E-10		0.023172854	[0.016-0.03] unit increase	Affymetrix [NR]	N
1029	chr13	58278526	58278527	rs7338138	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	PCDH17	rs7338138-A	NR	4E-8		0.021259146	[0.014-0.029] unit decrease	Affymetrix [NR]	N
1029	chr13	58288879	58288880	rs9537782	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs9537782-?	NR	6E-8		5.41	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1029	chr13	58288879	58288880	rs9537782	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	PCDH17	rs9537782-T	NR	4E-10		0.019580605	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1029	chr13	58303475	58303476	rs9563526	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	13q21.1	NR	rs9563526-C	0.206759	2E-17		0.07385275	[0.057-0.091] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1029	chr13	58313301	58313302	rs17262885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.1	Intergenic	rs17262885-A	0.2524	1E-30	(MTAG)	0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr13	58314177	58314177	rs67862727	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	13q21.1	NR	rs67862727-G	0.737202	5E-8		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
1029	chr13	58314195	58314196	rs7325960	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q21.1	PCDH17	rs7325960-T	0.2645	7E-12		0.015749019	[0.011-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
1029	chr13	58314195	58314196	rs7325960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs7325960-T	0.7367	1E-59	(MTAG)	0.0242	[0.021-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr13	58314195	58314196	rs7325960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.1	Intergenic	rs7325960-T	0.736	4E-19	(MTAG)	0.0232	[0.018-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr13	58316636	58316637	rs9563529	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q21.1	PCDH17	rs9563529-T	0.2058	4E-10		0.1173	[0.08-0.154] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1029	chr13	58319475	58319476	rs9569734	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	13q21.1	NR	rs9569734-?		3E-10		0.0188846	[0.013-0.025] unit increase	Affymetrix [19400418] (imputed)	N
1030	chr13	58335374	58335375	rs1334297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q21.1		rs1334297-?	NR	4E-22				NR [~ 8900000] (imputed)	N
1030	chr13	58335374	58335375	rs1334297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs1334297-A	0.7375	3E-58		0.0257	[0.023-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1030	chr13	58358158	58358159	rs8002014	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	13q21.1	NR	rs8002014-A	0.255252	1E-9		6.1	z score increase	NR [10847151] (imputed)	N
1030	chr13	58358158	58358159	rs8002014	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	13q21.1	PCDH17	rs8002014-?	NR	2E-11		6.68	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1030	chr13	58358158	58358159	rs8002014	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	13q21.1	NR	rs8002014-A	0.2685	4E-21		0.023683544	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1030	chr13	58358158	58358159	rs8002014	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	13q21.1	NR	rs8002014-?	0.7298	1E-13		1.0501208	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1030	chr13	58366633	58366634	rs9537803	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q21.1	PCDH17	rs9537803-C	0.2771	5E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1030	chr13	58371671	58371672	rs9537814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q21.1	Intergenic	rs9537814-T	0.7561	7E-12		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1030	chr13	58379497	58379498	rs1334299	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	13q21.1	PCDH17	rs1334299-?	NR	3E-9		0.00193352	[-0.00341-0.00727] unit decrease	Affymetrix [25921788] (imputed)	N
1030	chr13	58379497	58379498	rs1334299	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	13q21.1	PCDH17	rs1334299-?	NR	3E-9		0.0160567	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1030	chr13	58384391	58384392	rs9527702	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	13q21.1		rs9527702-A	0.7631	2E-15		75.57651	z score increase	NR [6814003]	N
1030	chr13	58385379	58385380	rs2320925	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	PCDH17	rs2320925-?	NR	4E-8		0.0148081	[0.0095-0.0201] unit increase	Affymetrix [25921788] (imputed)	N
1030	chr13	58405858	58405859	rs7982404	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	PCDH17	rs7982404-T	NR	2E-8		0.024989001	[0.016-0.034] unit increase	Affymetrix [NR]	N
1030	chr13	58416694	58416695	rs35207189	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q21.1	PCDH17	rs35207189-G	0.4679	3E-9		0.012336536	[0.0083-0.0164] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1030	chr13	58418905	58418906	rs7399616	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	13q21.1		rs7399616-?	NR	2E-9				NR [7857346] (imputed)	N
1030	chr13	58455527	58455528	rs1595217	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	RNA5SP30	rs1595217-?	NR	2E-9		0.010425	[0.007-0.0138] unit increase	Affymetrix [805426] (imputed)	N
1031	chr13	58466433	58466434	rs116967397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs116967397-A	0.9829	2E-8		0.0315	[0.021-0.042] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1031	chr13	58466433	58466434	rs116967397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs116967397-A	0.9829	3E-8	(MTAG)	0.0286	[0.018-0.039] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr13	58472641	58472642	rs9527727	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q21.1	RNA5SP30	rs9527727-C	0.2989	3E-9		0.013144938	[0.0088-0.0175] unit increase	Affymetrix [up to 18485882] (imputed)	N
1031	chr13	58472641	58472642	rs9527727	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	RNA5SP30	rs9527727-A	NR	3E-12		0.023339195	[0.017-0.03] unit decrease	Affymetrix [NR]	N
1031	chr13	58473865	58473866	rs7998050	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	13q21.1	PCDH17	rs7998050-A	0.296953	2E-8		0.0045089	[0.0029-0.0061] unit decrease	NR [NR] (imputed)	N
1031	chr13	58473865	58473866	rs7998050	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	RNA5SP30	rs7998050-A	NR	3E-8		5.558	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1031	chr13	58504263	58504264	rs9537869	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q21.1	intergenic	rs9537869-G	0.934983188210423	5E-6	(G_Streptococcus_HB)	0.767707	[0.44-1.1] unit increase	Illumina [7711310] (imputed)	N
1031	chr13	58504263	58504264	rs9537869	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q21.1	intergenic	rs9537869-G	0.934983188210423	5E-6	(F_Streptococcaceae_HB)	0.787298	[0.45-1.12] unit increase	Illumina [7711310] (imputed)	N
1031	chr13	58514664	58514665	rs1370053	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	13q21.1	PCDH17	rs1370053-T	0.02	6E-7	(men)	383.17	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1031	chr13	58523925	58523926	rs9563562	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q21.1		rs9563562-C	0.48	3E-17		8.44	z score increase	Affymetrix [9061022] (imputed)	N
1031	chr13	58523925	58523926	rs9563562	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q21.1	NR	rs9563562-C	0.457	4E-17				NR [9056863] (imputed)	N
1031	chr13	58548510	58548511	rs3843954	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	13q21.1	NR	rs3843954-G	0.249503	8E-10		0.044575088	[0.03-0.059] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1031	chr13	58548510	58548511	rs3843954	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	13q21.1	PCDH17, FARP1	rs3843954-?	NR	1E-12		0.00892582	[0.0065-0.0114] unit decrease	Affymetrix [NR] (imputed)	N
1031	chr13	58548510	58548511	rs3843954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	13q21.1	Intergenic	rs3843954-C	0.2919	6E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1031	chr13	58548510	58548511	rs3843954	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q21.1	NR	rs3843954-C	NR	5E-10		6.21	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1031	chr13	58548510	58548511	rs3843954	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	13q21.1	NR	rs3843954-C	NR	4E-8		0.01402	[0.009-0.019] unit increase	Affymetrix [10847151] (imputed)	N
1031	chr13	58565875	58565876	rs1036449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	NR	rs1036449-?	NR	5E-8		0.0095064	[0.0061-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
1032	chr13	58591050	58591051	rs9537915	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	13q21.1	NR	rs9537915-T	0.5836	1E-7	(Lingual)	0.002993919	[0.0019-0.0041] unit decrease	Affymetrix, Illumina [NR]	N
1032	chr13	58595042	58595043	rs1581853	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q21.1		rs1581853-A	0.5	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
1032	chr13	58595042	58595043	rs1581853	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q21.1	NR	rs1581853-A	0.4296	2E-10				NR [9056863] (imputed)	N
1032	chr13	58606354	58606355	rs9537923	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs9537923-?	NR	1E-7		5.294	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1032	chr13	58623782	58623783	rs12866691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q21.1		rs12866691-T	NR	3E-17		0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1032	chr13	58626187	58626188	rs11148421	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs11148421-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1032	chr13	58630650	58630651	rs12431244	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q21.1	NA	rs12431244-T	0.2441	2E-22		0.0195	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1032	chr13	58634822	58634823	rs1373921	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	13q21.1	PCDH17	rs1373921-A	0.230326	1E-12		7.08	z score decrease	NR [10847151] (imputed)	N
1032	chr13	58653020	58653021	rs2590996	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	13q21.1	NR	rs2590996-A	0.266402	3E-16		0.06513279	[0.05-0.081] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1032	chr13	58653694	58653695	rs9537938	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	13q21.1	intergenic	rs9537938-A	0.672	5E-7		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr13	58656598	58656599	rs9563574	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q21.1	NR	rs9563574-C	0.177	2E-11		0.0406	[0.029-0.052] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1032	chr13	58670146	58670147	rs9563576	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q21.1	NR	rs9563576-C	NR	6E-28		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1032	chr13	58670146	58670147	rs9563576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q21.1	PCDH17	rs9563576-C	0.813	5E-6	(EA)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1032	chr13	58670146	58670147	rs9563576	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q21.1	PCDH17	rs9563576-C	0.81	6E-6		0.017	[0.0098-0.0246] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1032	chr13	58680249	58680250	rs61958175	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs61958175-A	0.9538	8E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1032	chr13	58680249	58680250	rs61958175	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.1	Intergenic	rs61958175-A	0.9512	5E-10	(MTAG)	0.0332	[0.023-0.044] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr13	58691106	58691107	rs7991679	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q21.1	NR	rs7991679-T	0.7562	1E-8		0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1032	chr13	58691607	58691608	rs2321388	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	LINC00374	rs2321388-?	NR	3E-8		0.0096873	[0.0063-0.0131] unit decrease	Affymetrix [805426] (imputed)	N
1032	chr13	58691607	58691608	rs2321388	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	LINC00374	rs2321388-T	NR	9E-9		0.017191648	[0.011-0.023] unit increase	Affymetrix [NR]	N
1032	chr13	58693789	58693790	rs7323027	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs7323027-A	0.3719	4E-19		0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1032	chr13	58693789	58693790	rs7323027	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs7323027-A	0.3719	6E-17	(MTAG)	0.0113	[0.0086-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr13	58698034	58698035	rs186456786	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs186456786-A	0.9906	7E-9		0.0455	[0.03-0.061] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1032	chr13	58701433	58701434	rs920990	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q21.1	LINC00374	rs920990-T	0.4635	8E-11		0.013165827	[0.0092-0.0171] unit increase	Affymetrix [up to 18485882] (imputed)	N
1032	chr13	58701433	58701434	rs920990	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	LINC00374	rs920990-T	NR	3E-10		0.018384816	[0.013-0.024] unit increase	Affymetrix [NR]	N
1032	chr13	58702745	58702746	rs9569820	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	13q21.1	NR	rs9569820-?	NR	3E-8		1.0662	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1032	chr13	58709910	58709911	rs716907	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs716907-?	NR	3E-6		4.644	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1032	chr13	58711141	58711142	rs9569823	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.1	LINC00374	rs9569823-T	NR	1E-8		0.017864179	[0.012-0.024] unit increase	Affymetrix [NR]	N
1032	chr13	58712637	58712638	rs1348675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	13q21.1		rs1348675-A	NR	1E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1032	chr13	58713359	58713360	rs3012850	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	13q21.1	PCDH17, FARP1	rs3012850-?	NR	8E-12		0.00929193	[0.0066-0.012] unit decrease	Affymetrix [NR] (imputed)	N
1032	chr13	58720187	58720188	rs9527765	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	13q21.1		rs9527765-T	0.200377225	5E-6		0.014819851	[0.0085-0.0212] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1033	chr13	58736900	58736901	rs2321157	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs2321157-A	0.5303	8E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1033	chr13	58746131	58746132	rs17190418	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs17190418-T	0.0537	8E-12		0.0213	[0.015-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1033	chr13	58749075	58749076	rs4423317	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	13q21.1	Intergenic	rs4423317-G	0.665944286	5E-6		0.144589	[0.083-0.207] unit decrease	Illumina [6969139] (imputed)	N
1033	chr13	58822050	58822051	rs4627212	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	LINC00374	rs4627212-?	NR	2E-9		0.01047	[0.0071-0.0139] unit increase	Affymetrix [805426] (imputed)	N
1033	chr13	58829325	58829326	rs9537985	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	13q21.1		rs9537985-C	0.202833994	4E-6		0.015123947	[0.0087-0.0216] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1034	chr13	58878284	58878285	rs150502290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs150502290-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1034	chr13	58904312	58904313	rs10492604	17903308	Gottlieb DJ	2007-09-19	BMC Med Genet	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	13q21.1	intergenic	rs10492604-?	NR	4E-6	(Sleep duration)			Affymetrix [70897]	N
1034	chr13	58965434	58965435	rs9569864	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q21.1	PCDH17	rs9569864-C	0.8247	9E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1035	chr13	58983957	58983958	rs61957597	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	13q21.1	NR	rs61957597-A	0.23255	1E-9		6.11	unit increase	NR [10847151] (imputed)	N
1035	chr13	58988270	58988271	rs7988007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	13q21.1		rs7988007-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1035	chr13	59077405	59077406	rs9563615	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q21.1	SRGAP2D	rs9563615-A	0.7101	6E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1035	chr13	59083220	59083221	rs80074654	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs80074654-?	NR	3E-6		4.647	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1035	chr13	59085318	59085319	rs1854788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q21.1		rs1854788-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1036	chr13	59116159	59116160	rs4444227	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.1	NR	rs4444227-T	NR	1E-10		6.468	z score decrease	Affymetrix [10847151] (imputed)	N
1036	chr13	59116159	59116160	rs4444227	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q21.1	NR	rs4444227-T	0.214472	2E-9		6.04	z score decrease	NR [10847151] (imputed)	N
1036	chr13	59116159	59116160	rs4444227	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	13q21.1	NR	rs4444227-T	0.214472	1E-9		6.105	unit decrease	NR [10847151] (imputed)	N
1036	chr13	59117685	59117686	rs183877724	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.1	NR	rs183877724-?	NR	3E-6		0.0080013	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
1036	chr13	59128525	59128526	rs4886088	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q21.1	PCDH17	rs4886088-A	0.80	8E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1036	chr13	59130291	59130292	rs9527836	28128768	Ferrari R	2017-01-23	J Alzheimers Dis	Effects of Multiple Genetic Loci on Age at Onset in Frontotemporal Dementia.	Frontotemporal dementia (age at onset)	411 Italian ancestry cases	NA	13q21.1	LOC101926897, LOC105370219, LOC105370220	rs9527836-?	NR	8E-6		1.23		Illumina [~ 2500000] (imputed)	N
1036	chr13	59141521	59141522	rs11619066	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	13q21.1	NR	rs11619066-C	0.215297	1E-8		5.69	z score decrease	NR [10847151] (imputed)	N
1036	chr13	59159948	59159949	rs1330745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	13q21.1		rs1330745-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1036	chr13	59159948	59159949	rs1330745	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	13q21.1	NR	rs1330745-C	NR	3E-10		0.01819	[0.013-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
1036	chr13	59159949	59159950	rs1330746	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	13q21.1	CTAGE16P	rs1330746-G	0.2117	2E-8		0.015693484	[0.0095-0.0219] unit increase	NR [9417325] (imputed)	N
1036	chr13	59172649	59172650	rs9538136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs9538136-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1036	chr13	59175726	59175727	rs9317002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q21.1		rs9317002-A	NR	4E-13		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1036	chr13	59175726	59175727	rs9317002	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q21.1	PCDH17	rs9317002-C	0.485411	2E-16		0.0113783	[0.0087-0.0141] unit decrease	Affymetrix [12370749]	N
1036	chr13	59175726	59175727	rs9317002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs9317002-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1036	chr13	59175726	59175727	rs9317002	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.1	NA	rs9317002-A	0.5094	5E-19		0.0171	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1036	chr13	59184233	59184234	rs76251711	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q21.1	SRGAP2D	rs76251711-G	0.0126	2E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1036	chr13	59197535	59197536	rs4432163	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q21.1	NA	rs4432163-T	0.5037	6E-18		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1036	chr13	59199460	59199461	rs9538146	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q21.1	PCDH17	rs9538146-A	0.502937	2E-16		0.0115642	[0.0088-0.0143] unit decrease	Affymetrix [12370749]	N
1036	chr13	59212451	59212452	rs944875	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.1	NR	rs944875-?	NR	7E-7		4.957	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1037	chr13	59254158	59254159	rs9538160	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	13q21.1	NR	rs9538160-A		3E-8		0.0238311	[0.015-0.032] unit decrease	NR [6694342]	N
1037	chr13	59261224	59261225	rs4886100	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.1	NR	rs4886100-G	0.422	2E-9		0.0065598	[0.0044-0.0087] unit increase	NR [9732723] (imputed)	N
1037	chr13	59265042	59265043	rs9538162	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.1	NR	rs9538162-C	0.415874	2E-11	(Conditioned on chr13:59339281, chr13:59454139)	0.017379155	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
1037	chr13	59266052	59266053	rs4055791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.1		rs4055791-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1037	chr13	59280704	59280705	rs11839227	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs11839227-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1037	chr13	59296666	59296667	rs9527864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs9527864-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1037	chr13	59334075	59334076	rs9597833	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14- CD16-	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q21.1		rs9597833-G	0.42051	4E-8		0.1381	[0.089-0.187] unit decrease	Illumina [18215199] (imputed)	N
1037	chr13	59339280	59339281	rs1413119	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.1	NR	rs1413119-T	0.396	1E-7		0.00582689	[0.0037-0.008] unit decrease	NR [9732723] (imputed)	N
1037	chr13	59339280	59339281	rs1413119	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.1	NR	rs1413119-T	0.396318	5E-9	(Conditioned on chr13:59454139)	0.015255086	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1037	chr13	59340639	59340640	rs9538190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.1	Intergenic	rs9538190-C	0.178	1E-8	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1037	chr13	59342147	59342148	rs9527875	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	13q21.1	DIAPH3, PCDH17	rs9527875-?	NR	7E-8		0.59	[0.37-0.81] unit increase	Affymetrix [629686]	N
1037	chr13	59368056	59368057	rs9569968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.1	Intergenic	rs9569968-T	0.6608	4E-8	(MTAG)	0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1038	chr13	59377268	59377269	rs7989039	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	13q21.1	NR	rs7989039-?	0.0551	4E-6		0.164649	[0.095-0.235] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1038	chr13	59399033	59399034	rs722122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.1	NR	rs722122-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1038	chr13	59403032	59403033	rs9527905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.1	Intergenic	rs9527905-A	0.5883	4E-11	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1038	chr13	59403032	59403033	rs9527905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs9527905-A	0.5828	4E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1038	chr13	59403032	59403033	rs9527905	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.1	Intergenic	rs9527905-A	0.5828	2E-12	(MTAG)	0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1038	chr13	59405266	59405267	rs11620044	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q21.1	NR	rs11620044-G	NR	7E-6	(GEE model)	0.98684	[0.56-1.42] unit decrease	NR [NR] (imputed)	N
1038	chr13	59451988	59451989	rs2321882	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q21.1	NR	rs2321882-G	NR	8E-12		0.024	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1038	chr13	59451988	59451989	rs2321882	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q21.1	LOC101926897, DIAPH3	rs2321882-C	0.24	1E-8		0.02	[0.012-0.028] unit increase	Illumina [6108953] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.1		rs56367474-C	0.685	4E-16		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	intergenic	rs56367474-?	NR	8E-13		0.0187374	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	13q21.1	intergenic	rs56367474-?	NR	4E-12	(female)	0.0247972	[0.018-0.032] unit increase	Affymetrix [25921788] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.1	NR	rs56367474-T	0.304	1E-13		0.00873265	[0.0064-0.011] unit decrease	NR [9732723] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.1	NR	rs56367474-T	0.304	4E-10		0.017297545	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1038	chr13	59454138	59454139	rs56367474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	13q21.1	NR	rs56367474-T	0.301	5E-9		0.00929099	[0.0062-0.0124] unit increase	NR [9732723] (imputed)	N
1038	chr13	59454139	59454140	rs56081685	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	13q21.1	NR	rs56081685-T	0.686	3E-8		1.0305029	NR	NR [8968716] (imputed)	N
1038	chr13	59454139	59454140	rs56081685	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q21.1	DIAPH3	rs56081685-T	0.6856	2E-8		0.013031693	[0.0085-0.0176] unit increase	Affymetrix [11514654] (imputed)	N
1038	chr13	59454167	59454168	rs17055603	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	13q21.1	LINC00374, DIAPH3	rs17055603-A		4E-8		0.979	[NR]	Affymetrix [up to 79000000] (imputed)	N
1038	chr13	59458184	59458185	rs1538859	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs1538859-A	0.1647	7E-9	(conditional-joint)	0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1038	chr13	59483582	59483583	rs2153515	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q21.1	DIAPH3	rs2153515-A	0.745	3E-11		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1038	chr13	59492827	59492828	rs9538248	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q21.1	intergenic	rs9538248-C	0.678311	3E-13		0.0159356	[0.012-0.02] unit increase	NR [16516521] (imputed)	N
1038	chr13	59496461	59496462	rs9597907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.1		rs9597907-T	0.0738	2E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1039	chr13	59510700	59510701	rs9645945	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.1		rs9645945-T	0.614	8E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1039	chr13	59576364	59576365	rs12871550	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.2	DIAPH3	rs12871550-A	0.3229	1E-12		1.0271623		Affymetrix [11880941] (imputed)	N
1039	chr13	59579625	59579626	rs118102991	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q21.2	NR	rs118102991-A	NR	5E-6	(GEE model)	1.0582	[0.6-1.51] unit decrease	NR [NR] (imputed)	N
1039	chr13	59594989	59594990	rs111839202	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.2	Intergenic	rs111839202-A	0.9593	5E-8		0.0269	[0.017-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1039	chr13	59630037	59630038	rs9317045	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	13q21.2	NR	rs9317045-C		2E-6		0.1134	[0.067-0.16] SD units decrease	NR [10700000] (imputed)	N
1039	chr13	59630037	59630038	rs9317045	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	13q21.2	NR	rs9317045-C	NR	6E-7		0.1182	[0.072-0.165] SD units decrease	NR [10700000] (imputed)	N
1039	chr13	59632028	59632029	rs9570035	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	13q21.2	DIAPH3	rs9570035-C	0.6028	2E-9		0.014562734	[0.0098-0.0193] unit increase	Affymetrix [11515109] (imputed)	N
1040	chr13	59648693	59648694	rs1080225	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	13q21.2	intergenic	rs1080225-?	NR	5E-9		0.0162789	[0.011-0.022] unit increase	Affymetrix [25921788] (imputed)	N
1040	chr13	59677664	59677665	rs11620425	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.2	NR	rs11620425-?	NR	4E-6		4.59	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1040	chr13	59681145	59681146	rs2321993	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q21.2		rs2321993-A	0.5691	3E-11		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1040	chr13	59681145	59681146	rs2321993	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.2	DIAPH3	rs2321993-A	0.567	3E-12		0.0119341	[0.0086-0.0153] unit decrease	Affymetrix [11880941] (imputed)	N
1040	chr13	59758222	59758223	rs111869589	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	13q21.2	NR	rs111869589-?	NR	9E-6		6.1964	[1.83-10.56] unit increase	Illumina [at least 560000] (imputed)	N
1040	chr13	59763539	59763540	rs117760252	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	13q21.2		rs117760252-G	0.04684	8E-6		2.38	[1.628-3.478]	Affymetrix [7975321] (imputed)	N
1041	chr13	59832478	59832479	rs11842439	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q21.2	NR	rs11842439-C	0.062	6E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1041	chr13	59833109	59833110	rs1327942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q21.2		rs1327942-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1041	chr13	59833518	59833519	rs4886140	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q21.2	LOC100129308/DIAPH3	rs4886140-G	0.668277	4E-10		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1041	chr13	59833518	59833519	rs4886140	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q21.2	LOC100129308/DIAPH3	rs4886140-G	0.668277	1E-6		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1041	chr13	59859957	59859958	rs17056310	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q21.2	NR	rs17056310-?	NR	4E-6		10661.92	NR unit decrease	Illumina [2379855]	N
1041	chr13	59871583	59871584	rs55786907	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.2	NR	rs55786907-G	0.162492	2E-8	(Conditioned on chr13:59265043, chr13:59339281, chr13:59454139)	0.019445216	[0.013-0.026] unit increase	NR [~ 10000000] (imputed)	N
1041	chr13	59887700	59887701	rs9563710	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.2	NR	rs9563710-A	0.159	2E-9		0.00882841	[0.0059-0.0117] unit increase	NR [9732723] (imputed)	N
1042	chr13	59900364	59900365	rs4884332	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	13q21.2	RPP40P2	rs4884332-A	0.3489	9E-9				Illumina [5508534] (imputed)	N
1042	chr13	59953465	59953466	rs12585963	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	13q21.2	TDRD3	rs12585963-A	0.312	2E-6		0.08	[0.047-0.113] cup size increase	Illumina [7422970] (imputed)	N
1042	chr13	59963078	59963079	rs11839824	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.2	Intergenic	rs11839824-C	0.8051	3E-8		0.0136	[0.0087-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1042	chr13	59970347	59970348	rs113515519	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	13q21.2		rs113515519-T	NR	6E-6		3.79	[2.13-6.74]	Illumina [7488175] (imputed)	N
1042	chr13	59974438	59974439	rs11839321	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q21.2	NR	rs11839321-?	NR	3E-6		0.0081851	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
1043	chr13	60049690	60049691	rs7990995	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.2		rs7990995-C	0.401	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1043	chr13	60059712	60059713	rs4886166	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q21.2	NR	rs4886166-?	NR	2E-6				Illumina [NR] (imputed)	N
1043	chr13	60066559	60066560	rs9538439	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	13q21.2	NR	rs9538439-G	0.1413	8E-6		0.1	[0.056-0.144] unit decrease	Illumina [up to 1980188] (imputed)	N
1043	chr13	60070064	60070065	rs73206603	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	End-stage renal disease in type 2 diabetes	371 European ancestry cases, 2,076 European ancestry controls	1,089 European ancestry cases, 5,311 European ancestry controls, 877 Asian cases, 4,861 Asian controls, 20 Chinese ancestry cases, 149 Chinese ancestry controls	13q21.2	NR	rs73206603-?		1E-7	(EA)	1.83	[1.17-2.87]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1043	chr13	60070064	60070065	rs73206603	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	13q21.2	NR	rs73206603-?		1E-7	(EA)	1.83	[1.17-2.87]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1043	chr13	60089242	60089243	rs1711774	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	13q21.2	NR	rs1711774-G	0.597	8E-6		1.724138	[1.36-2.19]	Illumina [7585599] (imputed)	N
1043	chr13	60116103	60116104	rs831223	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	13q21.2	intergenic	rs831223-T	0.20	3E-6	(male)	0.733	[0.43-1.04] unit increase	Illumina [6380737] (imputed)	N
1043	chr13	60146533	60146534	rs79757778	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	13q21.2	RNU7-88P	rs79757778-A	0.0022	7E-6		0.6543	[0.37-0.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1043	chr13	60153622	60153623	rs862728	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q21.2	NR	rs862728-?		3E-6				Illumina [4322238] (imputed)	N
1044	chr13	60279545	60279546	rs7986704	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q21.2	NR	rs7986704-T	0.0562	4E-6	(Trans-16:1n-7, EA)	0.0051	[0.0029-0.0073] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1044	chr13	60279817	60279818	rs7987251	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	13q21.2	NR	rs7987251-T	0.0557	4E-6	(Trans-16:1n-7, EA)	0.0051	[0.0029-0.0073] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1045	chr13	60308090	60308091	rs1417329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q21.2		rs1417329-T	0.31	6E-15		7.8	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr13	60308090	60308091	rs1417329	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q21.2	NR	rs1417329-T	0.3159	1E-17				NR [9056863] (imputed)	N
1045	chr13	60310680	60310681	rs2453863	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q21.2		rs2453863-T	0.31	3E-16		8.18	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr13	60310680	60310681	rs2453863	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q21.2	NR	rs2453863-T	0.3203	4E-17				NR [9056863] (imputed)	N
1045	chr13	60315849	60315850	rs7991732	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 12)	19,670 European ancestry individuals	NA	13q21.2		rs7991732-?	NR	5E-14				NR [9705931] (imputed)	N
1045	chr13	60322247	60322248	rs7985860	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q21.2		rs7985860-A	0.31	1E-25		10.49	z score increase	Affymetrix [9061022] (imputed)	N
1045	chr13	60362012	60362013	rs11838830	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.2	NR	rs11838830-G	0.0564	5E-10		1.0834236	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
1045	chr13	60373703	60373704	rs76065946	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	13q21.2	DIAPH3	rs76065946-A	0.93	5E-9	(docosapentaenoic-n6)	0.69	[-1.4072-2.7872] unit increase	Illumina [~ 932000] (imputed)	N
1045	chr13	60373703	60373704	rs76065946	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	13q21.2	DIAPH3	rs76065946-A	0.93	5E-7	(docosapentaenoic-n6)			Illumina [~ 932000]	N
1045	chr13	60376906	60376907	rs341535	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	13q21.2		rs341535-G	NR	6E-6		0.95983		Affymetrix, Illumina [62056310] (imputed)	N
1045	chr13	60399044	60399045	rs341521	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q21.2	DIAPH3	rs341521-G	0.297777	9E-13		0.0159255	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
1045	chr13	60399044	60399045	rs341521	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	13q21.2	DIAPH3	rs341521-G	0.297761	6E-15		0.0327765	[0.025-0.041] unit increase	Affymetrix [641018] (imputed)	N
1045	chr13	60420105	60420106	rs341508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q21.2		rs341508-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1045	chr13	60421218	60421219	rs341504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.2	Intergenic	rs341504-A	0.3704	3E-11	(MTAG)	0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1045	chr13	60421218	60421219	rs341504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.2		rs341504-A	0.362	2E-11		0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1045	chr13	60421218	60421219	rs341504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.2	Intergenic	rs341504-A	0.362	8E-14	(MTAG)	0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1045	chr13	60421218	60421219	rs341504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.2	Intergenic	rs341504-A	0.3638	8E-9	(MTAG)	0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1046	chr13	60497330	60497331	rs2322622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q21.2		rs2322622-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1046	chr13	60497330	60497331	rs2322622	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.2	NA	rs2322622-T	0.6472	5E-9		0.0098	[0.0065-0.0131] unit decrease	NR [~ 27400000] (imputed)	N
1046	chr13	60532795	60532796	rs6562066	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.2	NR	rs6562066-T	0.3688	1E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1046	chr13	60536320	60536321	rs9538536	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	13q21.2	NR	rs9538536-T	0.331014	9E-11		0.04845775	[0.034-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1047	chr13	60610505	60610506	rs9538557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA			rs9538557-A	0.7466	5E-11	(conditional-joint)	0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1047	chr13	60614521	60614522	rs9528056	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q21.2	Intergenic	rs9528056-?	NR	6E-6		2.615063	[NR]	Affymetrix [492217] (imputed)	N
1048	chr13	60705791	60705792	rs4886207	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.2	NR	rs4886207-C	0.637	9E-10		0.016246675	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1048	chr13	60730502	60730503	rs9528062	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.2	NR	rs9528062-C	0.636	6E-12		0.00774462	[0.0055-0.0099] unit decrease	NR [9732723] (imputed)	N
1048	chr13	60730502	60730503	rs9528062	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	13q21.2	DIAPH3	rs9528062-?	0.28	3E-7		18.51	unit decrease	Illumina [120975] (imputed)	N
1048	chr13	60789906	60789907	rs4886217	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	13q21.2	NR	rs4886217-G	0.390656	2E-9		0.04319135	[0.029-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1049	chr13	60824701	60824702	rs7992913	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	13q21.2	DIAPH3	rs7992913-C	NR	3E-8	(PWY-3001_superpathway_of_L-isoleucine_biosynthesis_I)	5.55539	NR Z-score increase	Illumina [8100000] (imputed)	N
1049	chr13	60910290	60910291	rs2039970	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.2	DIAPH3	rs2039970-?	NR	5E-7	(phenylalanine)	0.19028907	[0.12-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1050	chr13	61061455	61061456	rs7322160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	13q21.2		rs7322160-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1051	chr13	61113738	61113739	rs4886238	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	13q21.2	TDRD3	rs4886238-G	0.66	3E-16		0.18	[0.14-0.22] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1051	chr13	61113738	61113739	rs4886238	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	13q21.2	TDRD3	rs4886238-A	0.334	1E-10		0.17	[0.12-0.22] years increase	Affymetrix, Illumina [2551160] (imputed)	N
1051	chr13	61191813	61191814	rs35780415	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q21.2	RNA5SP31	rs35780415-A	0.002	9E-6		1.0112	[0.57-1.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr13	61236354	61236355	rs7339373	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q21.2	intergenic	rs7339373-?	NR	7E-6		0.106	[0.055-0.157] unit increase	Illumina [at least 13000000] (imputed)	N
1052	chr13	61260523	61260524	rs1576377	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	13q21.2	NR	rs1576377-C	NR	4E-6				Illumina [10806625] (imputed)	N
1052	chr13	61281116	61281117	rs1041331	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	13q21.2	intergenic	rs1041331-A	NR	1E-6	(adjusted for clinical variables)			Illumina [up to 3951530] (imputed)	N
1054	chr13	61477830	61477831	rs9317149	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	13q21.2	LOC390407, PCDH20	rs9317149-?		5E-6		1.91	[1.30-2.51]	Illumina [5352724] (imputed)	N
1054	chr13	61513668	61513669	rs7337573	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	13q21.2	PCDH20	rs7337573-?	NR	2E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1054	chr13	61532596	61532597	rs1847505	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	13q21.2	NR	rs1847505-?		1E-6	(PCB170)	0.25	[0.15-0.35] unit increase	Illumina [8736858] (imputed)	N
1054	chr13	61591151	61591152	rs189571784	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	13q21.2	NR	rs189571784-A	0.02708	3E-6		1.658	[0.54-2.77] unit decrease	Illumina [at least 567677] (imputed)	N
1055	chr13	61676918	61676919	rs3121779	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.2	NR	rs3121779-?	NR	3E-8				Affymetrix [NR]	N
1055	chr13	61678911	61678912	rs3106598	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q21.2	PCDH20	rs3106598-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1055	chr13	61720065	61720066	rs9563886	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.2	NR	rs9563886-C	0.3937	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1055	chr13	61720065	61720066	rs9563886	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.2	NA	rs9563886-C	0.3923	2E-8	(Female)	1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1056	chr13	61742144	61742144	rs10637722	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	13q21.2	NR	rs10637722-ACT		8E-6		0.1043	[0.058-0.15] SD units decrease	NR [10700000] (imputed)	N
1056	chr13	61819168	61819169	rs117372720	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	13q21.2	intergenic	rs117372720-T	0.0149	9E-6		0.1092	NR unit increase	NR [NR] (imputed)	N
1057	chr13	61892075	61892075	rs10674174	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin and paclitaxel in ovarian cancer (Caspase 3/7 EC50)	74 lymphoblastoid cell lines	NA	13q21.2	PCDH20	rs10674174-?	NR	8E-7				Illumina [6243550] (imputed)	N
1057	chr13	61933130	61933131	rs1330598	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	13q21.2	Intergenic	rs1330598-C	NR	1E-6	(Defiant/Vindictive dimension)	1.172	[0.7-1.64] unit decrease	Illumina [1871025] (imputed)	N
1057	chr13	61941815	61941816	rs75933622	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q21.2	NR	rs75933622-?	NR	1E-8	(right inferior temporal)			NR [9227495] (imputed)	N
1057	chr13	61965302	61965303	rs2323266	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	13q21.2	PCDH20	rs2323266-?	NR	3E-6	(Positive symptoms)	0.1032	[NR] unit decrease	Affymetrix [696491]	N
1057	chr13	61984780	61984781	rs3829388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q21.2		rs3829388-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1058	chr13	62070818	62070819	rs2329317	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	13q21.2	Intergenic	rs2329317-C	0.590865714	2E-6		0.161001	[0.095-0.227] unit decrease	Illumina [6952813] (imputed)	N
1060	chr13	62302564	62302565	rs9528384	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	13q21.2	PCDH20, TDRD3	rs9528384-G	0.29	1E-6	(PAR-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
1060	chr13	62302564	62302565	rs9528384	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	13q21.2	PCDH20, TDRD3	rs9528384-G	0.29	1E-6	(PAR-dr)			Affymetrix, Illumina [NR] (imputed)	N
1060	chr13	62362155	62362156	rs2323533	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.2	NR	rs2323533-?	NR	1E-15				Affymetrix [NR]	N
1062	chr13	62595609	62595610	rs10161939	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	13q21.31	LINC00358	rs10161939-G	0.19	8E-6	(female)	0.0982	[0.055-0.141] unit increase	Illumina [6380737] (imputed)	N
1062	chr13	62602476	62602477	rs66468848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.31	Intergenic	rs66468848-T	0.7138	2E-10	(MTAG)	0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1062	chr13	62607637	62607638	rs17208030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q21.31		rs17208030-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1062	chr13	62612603	62612604	rs4497562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.31		rs4497562-A	0.7295	1E-12		0.0112	[0.0081-0.0143] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1062	chr13	62612603	62612604	rs4497562	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.31	Intergenic	rs4497562-A	0.7295	4E-14	(MTAG)	0.0112	[0.0083-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1062	chr13	62613844	62613845	rs9317213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.31	Intergenic	rs9317213-T	0.7264	2E-8	(MTAG)	0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1062	chr13	62613844	62613845	rs9317213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.31	Intergenic	rs9317213-T	0.7269	7E-12	(MTAG)	0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1063	chr13	62683658	62683659	rs1394879	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.31	NA	rs1394879-C	0.3998	2E-10		0.011	[0.0077-0.0143] unit increase	NR [~ 27400000] (imputed)	N
1063	chr13	62684449	62684450	rs1394877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.31		rs1394877-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1063	chr13	62685622	62685622	rs752047462	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q21.31		rs752047462-C	0.2338	9E-7		0.038934	[0.023-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
1063	chr13	62698014	62698015	rs192688594	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever in mesalamine-treated irritable bowel disease	90 Japanese ancestry cases, 1,433 Japanese ancestry controls	22 Japanese ancestry cases, 766 Japanese ancestry controls	13q21.31	NR	rs192688594-G	0.0134	3E-7		5.29	[4.65-5.92]	NR [7215020] (imputed)	N
1063	chr13	62721159	62721160	rs66674732	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q21.31	PCDH20	rs66674732-G	0.61748	7E-9		0.00816409	[0.0054-0.0109] unit decrease	Affymetrix [12370749]	N
1063	chr13	62721371	62721372	rs66761698	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.31	NR	rs66761698-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1064	chr13	62890656	62890657	rs9539479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q21.31	PCDH20	rs9539479-A	0.471	5E-9		0.0069	[0.0045-0.0093] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1065	chr13	62925138	62925139	rs373447	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	13q21.31		rs373447-A	NR	1E-5		1.8747	[1.06-2.69] unit increase	Illumina [NR] (imputed)	N
1065	chr13	62930299	62930300	rs9563960	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q21.31	NR	rs9563960-G	0.296508162707306	4E-6	(IGP51)	0.1591	[0.092-0.226] unit increase	Illumina [~ 2500000] (imputed)	N
1065	chr13	62930299	62930300	rs9563960	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q21.31	NR	rs9563960-G	0.296353501567398	7E-6	(IGP11)	0.1546	[0.087-0.222] unit increase	Illumina [~ 2500000] (imputed)	N
1065	chr13	62992696	62992697	rs993158	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.31	NR	rs993158-?	NR	5E-7				Affymetrix [NR]	N
1066	chr13	63169265	63169266	rs10507678	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	13q21.31	PCDH20, LOC101926951, LINC00358, LINC01075	rs10507678-?	NR	4E-7	(African)	0.0719	[0.043-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1067	chr13	63216678	63216679	rs61950818	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	13q21.31	NR	rs61950818-?		3E-6		15.35	[10.75-19.95] unit increase	Illumina [~ 4900000] (imputed)	N
1067	chr13	63219476	63219477	rs1603949	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	13q21.31	NR	rs1603949-T	0.115551	2E-6				Illumina [5378266] (imputed)	N
1067	chr13	63282833	63282834	rs9528554	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q21.31	NR	rs9528554-T	0.7493	3E-7		0.0155	[0.0096-0.0214] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1067	chr13	63282833	63282834	rs9528554	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q21.31	NR	rs9528554-T	0.7509	9E-6		0.0174	[0.0097-0.0251] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1067	chr13	63284037	63284038	rs116571008	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q21.31	NR	rs116571008-?	NR	7E-7	(Latino)	1.0121	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1068	chr13	63340984	63340985	rs140687271	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	13q21.31	LINC00448	rs140687271-C	0.99	5E-6		7.692308	[3.23-20]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1068	chr13	63394792	63394793	rs1335688	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	13q21.31	intergenic	rs1335688-C	0.153	1E-6		0.14	[0.081-0.199] unit increase	Illumina [2316178] (imputed)	N
1068	chr13	63436799	63436800	rs2204037	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	13q21.31	NR	rs2204037-A	0.39	5E-7		1.38	[0.85-1.91] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1069	chr13	63495852	63495853	rs73200886	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	13q21.31	RPL32P28, OR7E156P	rs73200886-C	0.208	2E-7		0.38	[0.24-0.52] unit decrease	Illumina [7938386] (imputed)	N
1069	chr13	63507481	63507482	rs79340079	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q21.31	NR	rs79340079-?	NR	3E-6	(Latino)	0.8904	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1070	chr13	63634349	63634350	rs9317284	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	13q21.31	intergenic	rs9317284-?	NR	2E-7	(FNBMDm)			Affymetrix [70897]	N
1070	chr13	63638328	63638329	rs3119939	21907864	Ferreira MA	2011-09-10	Lancet	Identification of IL6R and chromosome 11q13.5 as risk loci for asthma.	Asthma	12,475 European ancestry cases, 19,967 European ancestry controls	3,322 European ancestry cases, 22,036 European ancestry controls	13q21.31	PCDH20	rs3119939-?	0.51	8E-6		1.08	[1.04-1.10]	Illumina [NR] (imputed)	N
1071	chr13	63738723	63738724	rs73505772	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q21.31	NR	rs73505772-?	NR	3E-7	(Latino)	1.3909	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1071	chr13	63805715	63805716	rs9598562	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	13q21.31	NR	rs9598562-T	0.212546	4E-6		1.15	[1.09-1.23]	Illumina [8992756] (imputed)	N
1071	chr13	63807824	63807825	rs139898495	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.31	NR	rs139898495-?	NR	6E-6		4.54	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1073	chr13	64048488	64048489	rs185603859	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.31	Intergenic	rs185603859-G	0.999	5E-6	(AA)	0.229	unit increase	Illumina [NR] (imputed)	N
1073	chr13	64064587	64064588	rs1340490	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	13q21.31	intergenic	rs1340490-?		3E-6				NR [~ 3000000] (imputed)	N
1073	chr13	64093344	64093345	rs182426545	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.31	Intergenic	rs182426545-T	0.999	3E-6	(AA)	0.24	unit increase	Illumina [NR] (imputed)	N
1074	chr13	64108287	64108288	rs11840815	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	13q21.31	OR7E156P	rs11840815-?		7E-10				Affymetrix, Illumina [2374420] (imputed)	N
1074	chr13	64116573	64116574	rs1352757	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q21.31	intergenic	rs1352757-G	NR	4E-6		1.35	[1.19-1.53]	NR [7738399] (imputed)	N
1074	chr13	64122618	64122619	rs9539806	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q21.31	intergenic	rs9539806-G	NR	6E-6		1.32	[1.17-1.50]	NR [7738399] (imputed)	N
1074	chr13	64124602	64124603	rs182755327	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.31	Intergenic	rs182755327-T	0.999	4E-6	(AA)	0.236	unit increase	Illumina [NR] (imputed)	N
1074	chr13	64139073	64139074	rs2218400	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q21.31	intergenic	rs2218400-A	NR	1E-6		1.38	[1.21-1.57]	NR [7738399] (imputed)	N
1074	chr13	64141912	64141913	rs1000589	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q21.31	intergenic	rs1000589-T	NR	8E-6		1.31	[1.17-1.48]	NR [7738399] (imputed)	N
1074	chr13	64141912	64141913	rs1000589	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	13q21.31	intergenic	rs1000589-T	0.53	3E-6		1.27	[1.15-1.39]	Illumina [2731086] (imputed)	N
1074	chr13	64148070	64148071	rs7330800	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q21.31	intergenic	rs7330800-C	NR	1E-6		1.38	[1.21-1.58]	NR [7738399] (imputed)	N
1074	chr13	64163635	64163636	rs7994551	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.31	NR	rs7994551-?	NR	7E-7				Affymetrix [NR]	N
1074	chr13	64210397	64210398	rs4884502	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	13q21.31	OR7E156P	rs4884502-?		9E-6		0.32	[NR] unit increase	Illumina [430487]	N
1079	chr13	64836487	64836488	rs61949650	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	13q21.31	Intergenic	rs61949650-T	0.938	3E-8		0.0251	[0.016-0.034] unit increase	Affymetrix [11535925] (imputed)	N
1079	chr13	64872002	64872003	rs1856765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.31	Intergenic	rs1856765-A	0.5473	3E-16	(MTAG)	0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1079	chr13	64872002	64872003	rs1856765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.31	Intergenic	rs1856765-A	0.5473	2E-14	(MTAG)	0.0126	[0.0093-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1079	chr13	64872386	64872387	rs61951503	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	13q21.31	intergenic	rs61951503-A	0.0122455	5E-6		2.75224	[1.78166-4.25155]	NR [7263501] (imputed)	N
1079	chr13	64872635	64872636	rs3947609	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.31	Intergenic	rs3947609-T	0.5512	8E-15		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1079	chr13	64872635	64872636	rs3947609	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q21.31	Intergenic	rs3947609-T	0.5512	7E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1080	chr13	64881953	64881954	rs9540044	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q21.31	NR	rs9540044-?		7E-6				Illumina [4322238] (imputed)	N
1080	chr13	64891196	64891197	rs11148643	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs11148643-?	NR	5E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64900800	64900801	rs7989250	30745170	Strawbridge RJ	2019-02-07	EBioMedicine	Identification of novel genome-wide associations for suicidality in UK Biobank, genetic correlation with psychiatric disorders and polygenic association with completed suicide.	Suicidality	122,808 British ancestry individuals	NA	13q21.31	NR	rs7989250-A	0.322	3E-8		0.052	[0.034-0.07] unit decrease	Affymetrix [9481578] (imputed)	N
1080	chr13	64930994	64930995	rs1340317	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs1340317-?	NR	3E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64936242	64936243	rs9571178	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs9571178-?	NR	3E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64945173	64945174	rs9598783	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs9598783-?	NR	3E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64946697	64946698	rs2220327	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs2220327-?	NR	1E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64950421	64950422	rs1340319	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	13q21.31	NR	rs1340319-?	NR	3E-7	(ACPA-positive RA vs controls)			Illumina [1723056] (imputed)	N
1080	chr13	64953524	64953525	rs116489739	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	13q21.31	NR	rs116489739-?	NR	9E-6		0.01099	[0.0061-0.0159] unit decrease	Affymetrix [9658292] (imputed)	N
1080	chr13	64980268	64980269	rs9528753	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	13q21.31	NR	rs9528753-A	NR	2E-7		0.01233	[0.0077-0.017] unit decrease	Illumina [~ 540852]	N
1080	chr13	64991620	64991621	rs61951392	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	13q21.31	intergenic	rs61951392-T	0.0123489	8E-6		2.60856	[1.71111-3.97672]	NR [7263501] (imputed)	N
1081	chr13	65046796	65046797	rs77261131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.31	Intergenic	rs77261131-A	0.0982	3E-9	(MTAG)	0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1081	chr13	65046796	65046797	rs77261131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.31	Intergenic	rs77261131-G	0.9018	9E-10		0.0201	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1081	chr13	65067919	65067920	rs10507710	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	13q21.31	NR	rs10507710-G	0.219206	2E-7		1.074	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
1081	chr13	65078466	65078467	rs9540128	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	13q21.31	chr13q21	rs9540128-T	NR	2E-8		2.0193	NR	Illumina [up to 4495750] (imputed)	N
1081	chr13	65078466	65078467	rs9540128	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	13q21.31	NR	rs9540128-T	0.1176	1E-7		2.046	[1.571-2.664]	Illumina [4388215] (imputed)	N
1081	chr13	65116310	65116311	rs12870105	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	13q21.31	NR	rs12870105-G	0.12463783901063136	2E-7	(EA)	1.37	[1.25-1.49]	Illumina [6576307] (imputed)	N
1082	chr13	65147911	65147912	rs80306305	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q21.31	NR	rs80306305-A	0.01394	8E-9	(UGT2B15)	0.3745	NR unit increase	Illumina [1671387] (imputed)	N
1082	chr13	65165837	65165838	rs61950023	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	13q21.31	intergenic	rs61950023-G	0.0132789	2E-6		2.74006	[1.80165-4.16726]	NR [7263501] (imputed)	N
1082	chr13	65179585	65179586	rs17088924	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	13q21.31	LGMNP1	rs17088924-C	NR	3E-9		1.14425	[0.77-1.52] unit increase	Illumina [NR] (imputed)	N
1082	chr13	65245339	65245340	rs359364	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus D bicirculans abundance in stool	5,959 Finnish ancestry individuals	NA	13q21.31		rs359364-T	0.329252	5E-8		0.0977203	[0.063-0.133] unit decrease	Illumina [7980478] (imputed)	N
1082	chr13	65245339	65245340	rs359364	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus D abundance in stool	5,959 Finnish ancestry individuals	NA	13q21.31		rs359364-T	0.329252	4E-8		0.0984533	[0.063-0.134] unit decrease	Illumina [7980478] (imputed)	N
1083	chr13	65340420	65340421	rs66481224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.31	Intergenic	rs66481224-A	0.735	2E-8	(MTAG)	0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1083	chr13	65340420	65340421	rs66481224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.31	Intergenic	rs66481224-A	0.735	1E-8		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1083	chr13	65345614	65345615	rs113125970	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	13q21.31	LINC00355, LINC01052	rs113125970-G	0.037699	4E-6		0.751826	[0.43-1.07] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1083	chr13	65370522	65370523	rs1913223	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	13q21.31	intergenic	rs1913223-T	0.8943	7E-7		0.069	[0.096-0.042] unit decrease	Illumina [11434023] (imputed)	N
1084	chr13	65477939	65477940	rs8181823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.31	NA	rs8181823-A	0.2344	4E-10		0.0125	[0.0086-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
1084	chr13	65480475	65480476	rs4435118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.31	NR	rs4435118-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1084	chr13	65480475	65480476	rs4435118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.31		rs4435118-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1084	chr13	65494776	65494776	rs11454281	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	13q21.31	intergenic	rs11454281-?	NR	9E-6		0.6	[0.33-0.87] unit increase	Illumina [1075436] (imputed)	N
1084	chr13	65497207	65497208	rs28447350	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	13q21.31	intergenic	rs28447350-?	NR	5E-7		3.66	[2.23-6.0]	Illumina [654642] (imputed)	N
1085	chr13	65564030	65564031	rs9540294	25935106	Kim KW	2015-04-30	J Allergy Clin Immunol	Genome-wide association study of recalcitrant atopic dermatitis in Korean children.	Recalcitrant atopic dermatitis	246 Korean ancestry child cases, 551 Korean ancestry adult controls	NA	13q21.31	PCDH9	rs9540294-G	0.083	1E-8		2.655	[1.904-3.717]	Affymetrix [2501352] (imputed)	N
1086	chr13	65744891	65744892	rs7995814	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	13q21.31	PCDH0	rs7995814-G	0.419514	1E-9		1.0271591	NR	Affymetrix [~ 9600000] (imputed)	N
1087	chr13	65807282	65807283	rs778433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q21.32		rs778433-A	NR	1E-11		0.013	[0.0093-0.0167] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1087	chr13	65807282	65807283	rs778433	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	13q21.32	intergenic	rs778433-A	0.435	7E-7		1.05802	[1.04-1.08]	NR [9372253] (imputed)	N
1087	chr13	65810570	65810571	rs2117002	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	13q21.32	LINC00355, LINC01052	rs2117002-A	0.4144	1E-7	(female)	0.1187	[0.074-0.163] unit increase	NR [NR] (imputed)	N
1087	chr13	65827986	65827987	rs116902978	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score)	3,991 European and unknown ancestry individuals	NA	13q21.32	intergenic	rs116902978-G	0.033	6E-7		2.81	[2.4-3.22]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1088	chr13	65991905	65991906	rs9598973	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	13q21.32	LINC01052	rs9598973-?		5E-7	(dominant)	0.226	[0.16-0.29] unit increase	Illumina [1492601] (imputed)	N
1088	chr13	65991905	65991906	rs9598973	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	13q21.32	LINC01052	rs9598973-?		4E-6	(additive)	0.11	[0.063-0.157] unit increase	Illumina [1492601] (imputed)	N
1088	chr13	66044805	66044806	rs35528533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.32	NR	rs35528533-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1089	chr13	66120783	66120784	rs1333026	17903300	Fox CS	2007-09-19	BMC Med Genet	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Body mass index	1,341 European ancestry individuals from 310 families	NA	13q21.32	intergenic	rs1333026-?	NR	8E-6				Affymetrix [70897]	N
1089	chr13	66189635	66189636	rs75113042	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	13q21.32	NR	rs75113042-C	0.091	4E-7	(Bray-Curtis metric)	4.9414496	NR z-score increase	Illumina [5293637] (imputed)	N
1090	chr13	66204134	66204134	rs371090030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q21.32		rs371090030-CT	NR	5E-13		0.0131	[0.0096-0.0166] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1090	chr13	66204879	66204880	rs9564268	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q21.32	NR	rs9564268-C	0.544	8E-10		0.0243	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1090	chr13	66205227	66205228	rs1333010	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q21.32	PCDH9	rs1333010-G	0.389639	5E-17		0.0120684	[0.0092-0.0149] unit increase	Affymetrix [12370749]	N
1090	chr13	66205703	66205704	rs9540493	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.32	NR	rs9540493-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.32		rs9540493-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.32	NA	rs9540493-A	0.458	8E-15		0.0129	[0.0096-0.0162] unit increase	NR [~ 27400000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q21.32	NA	rs9540493-A	0.458	8E-15		0.0129	[0.0096-0.0162] unit increase	NR [~ 27400000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q21.32	NR	rs9540493-A	NR	2E-10		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q21.32	LOC102723968, MIR548X2	rs9540493-G	0.53	6E-10		0.017	[0.011-0.023] unit decrease	Illumina [6108953] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q21.32	STARP1	rs9540493-A	0.469	8E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	13q21.32	STARP1	rs9540493-A	0.469	7E-7		0.0192	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q21.32	STARP1	rs9540493-A	0.469	8E-8		0.0184	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q21.32	STARP1	rs9540493-A	0.469	3E-6	(women)	0.0206	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	13q21.32	NR	rs9540493-A	0.451974617419625	2E-9		0.017341554	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr13	66205703	66205704	rs9540493	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q21.32	MIR548X2	rs9540493-A	0.464	4E-9		0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1090	chr13	66205703	66205704	rs9540493	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q21.32	MIR548X2	rs9540493-A	0.456	1E-7	(EA)	0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1090	chr13	66212019	66212020	rs11619878	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q21.32	NR	rs11619878-G	0.510985562333036	1E-7	(IGP15)	0.1632	[0.1-0.22] unit decrease	Illumina [~ 2500000] (imputed)	N
1091	chr13	66346046	66346047	rs1953124	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	13q21.32	intergenic	rs1953124-C	0.255411	4E-7		0.557501	[0.35-0.77] unit increase	NR [7263501] (imputed)	N
1091	chr13	66356340	66356341	rs17077331	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	13q21.32	PCDH9	rs17077331-?	NR	4E-6	(FEV1/FVC decline in non-asthmatics)	0.5048	[0.29-0.72] unit increase	Illumina [~ 2500000] (imputed)	N
1091	chr13	66372496	66372497	rs17077666	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	13q21.32		rs17077666-?	NR	5E-9				Illumina [1128286]	N
1092	chr13	66481814	66481815	rs1585440	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q21.32	LOC387933	rs1585440-C	0.71	9E-6	(allelic)	1.3	[1.16-1.45]	Illumina [420236]	N
1092	chr13	66519777	66519778	rs17790868	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	13q21.32		rs17790868-?	NR	5E-9				Illumina [1128286]	N
1092	chr13	66542714	66542715	rs61361413	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	13q21.32	intergenic	rs61361413-?	NR	7E-9		0.00941325	[0.0062-0.0126] unit decrease	Affymetrix [NR] (imputed)	N
1092	chr13	66561273	66561274	rs111205626	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	13q21.32	intergenic	rs111205626-T	0.85095	1E-8		5.718	z score decrease	Illumina [18485882] (imputed)	N
1092	chr13	66582409	66582410	rs58446129	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	13q21.32	NR	rs58446129-T	0.156004	2E-8		5.62	z score increase	NR [~ 10847151] (imputed)	N
1093	chr13	66590867	66590868	rs9571526	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.32	PCDH9	rs9571526-G	0.22940000000000005	5E-9		1.0275733		Affymetrix [11880941] (imputed)	N
1093	chr13	66678059	66678060	rs73201756	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	13q21.32		rs73201756-?	NR	5E-9				Illumina [1128286]	N
1093	chr13	66704212	66704213	rs9571548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.32	NR	rs9571548-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1094	chr13	66726902	66726903	rs17490056	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	13q21.32	PCDH9	rs17490056-T	0.5	1E-6	Biological dust	133.8	[NR] unit decrease	Illumina [up to 221663]	N
1094	chr13	66731476	66731477	rs9599076	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Waist circumference	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	13q21.32	MIR548X2, MIR4704	rs9599076-?	NR	6E-8	(TransMeta)			Illumina [3153931] (imputed)	N
1095	chr13	66908398	66908399	rs1982305	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	13q21.32	PCDH9	rs1982305-G	0.2358	4E-6		1.25	[1.14-1.37]	Illumina [64973696] (imputed)	N
1095	chr13	66913377	66913378	rs9540715	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	13q21.32	PCDH9	rs9540715-A	0.4645	5E-9		0.0588	[0.039-0.078] unit increase	NR [9744772] (imputed)	N
1095	chr13	66920914	66920915	rs9540718	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.32		rs9540718-A	0.4893	2E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1095	chr13	66922704	66922705	rs9540720	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	13q21.32	PCDH9	rs9540720-A	0.52	3E-8		0.027	unit decrease	NR [2324712] (imputed)	N
1095	chr13	66922704	66922705	rs9540720	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.32		rs9540720-A	0.5101	6E-11	(conditional-joint)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1095	chr13	66922704	66922705	rs9540720	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	13q21.32	PCDH9	rs9540720-G	0.499908	9E-7		0.0305	[0.019-0.042] unit increase	Illumina [1220000] (imputed)	N
1095	chr13	66936132	66936133	rs9571576	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q21.32	PCDH9	rs9571576-T	0.5056	1E-8		0.011463561	[0.0075-0.0154] unit decrease	Affymetrix [11514654] (imputed)	N
1095	chr13	66941791	66941792	rs9592461	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	13q21.32	NR	rs9592461-?		2E-12				NR [520857]	N
1095	chr13	66941791	66941792	rs9592461	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	13q21.32	NR	rs9592461-?		2E-12				NR [11140414]	N
1095	chr13	66941791	66941792	rs9592461	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	13q21.32	NR	rs9592461-A	0.4874	1E-28		1.025	[1.02-1.029]	NR [8098588] (imputed)	N
1095	chr13	66941791	66941792	rs9592461	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.32	NR	rs9592461-G	0.515592819736053	5E-9		0.005373029	[0.0036-0.0072] unit decrease	NR [NR]	N
1095	chr13	66941791	66941792	rs9592461	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q21.32	NR	rs9592461-G	0.515592819736053	2E-8		0.00597503	[0.0039-0.0081] unit decrease	NR [NR]	N
1095	chr13	66941791	66941792	rs9592461	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q21.32	NR	rs9592461-A	NR	2E-12		7.062	z score increase	Affymetrix [10847151] (imputed)	N
1095	chr13	66946476	66946477	rs7988498	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	13q21.32		rs7988498-?	NR	5E-24		0.0271	unit decrease	NR [NR]	N
1095	chr13	66947123	66947124	rs9540729	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.32	NR	rs9540729-A	0.4794	1E-9		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1095	chr13	66949369	66949370	rs9540731	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	13q21.32	PCDH9	rs9540731-C		4E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
1095	chr13	66949369	66949370	rs9540731	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q21.32	NR	rs9540731-T	0.509	3E-12		0.017730324	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1095	chr13	66951828	66951829	rs1413573	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	13q21.32	NR	rs1413573-A	0.492	2E-8		1.0319917	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1095	chr13	66957532	66957533	rs9529055	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.32	NR	rs9529055-A	0.485	2E-16		0.0088811	[0.0068-0.011] unit increase	NR [9732723] (imputed)	N
1095	chr13	66957532	66957533	rs9529055	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	13q21.32	NR	rs9529055-A	0.48	3E-12		0.0101954	[0.0073-0.0131] unit decrease	NR [9732723] (imputed)	N
1095	chr13	66957532	66957533	rs9529055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.32	Intergenic	rs9529055-A	0.4958	2E-9	(MTAG)	0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1095	chr13	66957532	66957533	rs9529055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.32	Intergenic	rs9529055-A	0.4849	4E-11	(MTAG)	0.0087	[0.0062-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1095	chr13	66967621	66967622	rs17081231	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	13q21.32	PCDH9	rs17081231-?	NR	7E-7	(weight)			Illumina [~ 550000]	N
1095	chr13	66970211	66970212	rs77691144	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	13q21.32	NR	rs77691144-T	0.9682	2E-8		0.20954372	[0.14-0.28] unit decrease	NR [NR]	N
1095	chr13	66970211	66970212	rs77691144	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	13q21.32	Intergenic	rs77691144-C	0.025	6E-7		1.2330457	[NR]	Illumina [9112387] (imputed)	N
1095	chr13	66974705	66974706	rs4883777	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q21.32	NR	rs4883777-T	NR	1E-8		5.712	z score increase	Affymetrix [10847151] (imputed)	N
1096	chr13	66980120	66980121	rs9599110	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q21.32	NR	rs9599110-T	NR	2E-6	(GEE model)	0.8945	[0.53-1.26] unit decrease	NR [NR] (imputed)	N
1096	chr13	66987130	66987131	rs9599114	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Current cigarettes per day in chronic obstructive pulmonary disease	2,854 European ancestry individuals	NA	13q21.32	PCDH9	rs9599114-?	NR	8E-8		0.11	[0.071-0.149] unit increase	Illumina [7807992] (imputed)	N
1096	chr13	66996043	66996044	rs147861665	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.32	PCDH9	rs147861665-C	NR	1E-9		0.010263	[0.007-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
1096	chr13	67013048	67013049	rs9592470	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q21.32	NR	rs9592470-C	0.450451785199201	3E-8		0.008199534	[0.0053-0.0111] unit increase	NR [NR]	N
1096	chr13	67043091	67043092	rs2027099	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q21.32	NR	rs2027099-?	NR	5E-6	(Native Hawaiian)	0.2073	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1096	chr13	67054044	67054045	rs35560901	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	13q21.32	NR	rs35560901-A	0.32	5E-11		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1097	chr13	67140842	67140843	rs9529095	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs9529095-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1097	chr13	67141931	67141932	rs76876592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.32		rs76876592-A	0.8609	6E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1097	chr13	67141931	67141932	rs76876592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.32	Intergenic	rs76876592-A	0.8609	2E-10	(MTAG)	0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1097	chr13	67160680	67160681	rs11148708	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	13q21.32	PCDH9	rs11148708-?		3E-6				NR [~ 3000000] (imputed)	N
1097	chr13	67221375	67221376	rs78643921	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	13q21.32	NR	rs78643921-C	0.896425	1E-6		1.0764263	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1098	chr13	67332811	67332812	rs6562474	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	13q21.32		rs6562474-C	0.651	1E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1098	chr13	67341774	67341775	rs1885949	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.32	NR	rs1885949-C	0.192	2E-9		0.0082719	[0.0056-0.011] unit decrease	NR [9732723] (imputed)	N
1098	chr13	67348551	67348556	rs71787773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q21.32		rs71787773-A	NR	2E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1099	chr13	67380167	67380168	rs7319172	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	13q21.32	intergenic	rs7319172-G	0.432439	7E-9	(EA)	0.00699888	[0.0046-0.0094] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1099	chr13	67383678	67383679	rs114296142	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q21.32	NR	rs114296142-C	0.0122	3E-9	(ALDH5A1)	0.268	NR unit increase	Illumina [1671387] (imputed)	N
1099	chr13	67419494	67419495	rs9529148	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q21.32	PCDH9	rs9529148-G	0.377206	2E-8		0.00800109	[0.0052-0.0108] unit decrease	Affymetrix [12370749]	N
1099	chr13	67441724	67441725	rs9540938	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Latent naming speed	883 Hispanic American children, 441 African American children	NA	13q21.32	PCDH9	rs9540938-A	NR	5E-7		5.025	NR z score decrease	Illumina [1265623]	N
1099	chr13	67472712	67472713	rs9571687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q21.32	NR	rs9571687-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1099	chr13	67472712	67472713	rs9571687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q21.32		rs9571687-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1099	chr13	67472712	67472713	rs9571687	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q21.32	NA	rs9571687-A	0.3404	2E-11		0.0122	[0.0087-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
1099	chr13	67472712	67472713	rs9571687	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q21.32	NA	rs9571687-A	0.3404	2E-11		0.0122	[0.0087-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
1099	chr13	67486401	67486402	rs41386946	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs41386946-?	NR	5E-9				Affymetrix [NR] (imputed)	N
1099	chr13	67486923	67486924	rs73208976	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs73208976-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1099	chr13	67487070	67487071	rs12428945	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs12428945-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1099	chr13	67487071	67487072	rs12430913	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs12430913-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1099	chr13	67487412	67487413	rs1323922	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q21.32		rs1323922-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1100	chr13	67550995	67550996	rs1359191	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	13q21.32	PCDH9-AS3	rs1359191-C	0.35	2E-6		1.32		Illumina [8974355] (imputed)	N
1100	chr13	67560611	67560612	rs17252438	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	13q21.32	PCDH9	rs17252438-T	0.06	3E-6	(Ajusted for ApoE)	0.05	[0.03-0.07] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1100	chr13	67560611	67560612	rs17252438	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	13q21.32	PCDH9	rs17252438-T	0.05	4E-6		0.05	[0.03-0.07] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1101	chr13	67639140	67639141	rs9571710	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDH9	5,359 Icelandic ancestry individuals	NA	13q21.32		rs9571710-T	0.2653	1E-19		0.190551	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1101	chr13	67686839	67686840	rs9317639	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q21.32	NR	rs9317639-C	NR	5E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
1101	chr13	67692534	67692535	rs7999949	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.32	NR	rs7999949-?	NR	5E-6				Affymetrix [NR]	N
1101	chr13	67696144	67696145	rs2875517	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	13q21.32	PCDH9	rs2875517-?	NR	3E-6	(DMFS3)			Illumina [518997]	N
1101	chr13	67696671	67696672	rs9541009	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	13q21.32	PCDH9	rs9541009-T	NR	1E-6		0.0463086	[0.028-0.065] unit decrease	Illumina [13519193] (imputed)	N
1101	chr13	67696671	67696672	rs9541009	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q21.32	PCDH9	rs9541009-T	0.042	5E-7		0.0434008	[0.026-0.06] unit decrease	Illumina [13520550] (imputed)	N
1101	chr13	67696671	67696672	rs9541009	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	13q21.32	PCDH9	rs9541009-T	NR	4E-7		0.0508019	[0.031-0.07] unit decrease	Illumina [13520550] (imputed)	N
1101	chr13	67722204	67722205	rs913493	30945699	Wei J	2019-04-04	Med Sci Monit	Genome-Wide Association Study Identifies a Genetic Prediction Model for Postoperative Survival in Patients with Hepatocellular Carcinoma.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry cases	758 East Asian ancestry cases	13q21.32	PCDH9	rs913493-?	NR	5E-20				Affymetrix [630573]	N
1101	chr13	67722204	67722205	rs913493	30945673	Prasad G	2019-03-01	J Genet	Genomewide association study for C-reactive protein in Indians replicates known associations of common variants.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry individuals	758 East Asian ancestry individuals	13q21.32	PCDH9	rs913493-?	NR	5E-20				Affymetrix [630573]	N
1101	chr13	67726829	67726830	rs36080062	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q21.32	PCDH9	rs36080062-?		7E-13				Affymetrix, Illumina [NR] (imputed)	N
1101	chr13	67762287	67762288	rs9529199	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.32	NR	rs9529199-?	NR	3E-35				Affymetrix [NR]	N
1102	chr13	67771723	67771724	rs1983949	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.32	NR	rs1983949-A	0.535317591061467	2E-8		0.0051738913	[0.0034-0.007] unit increase	NR [NR]	N
1102	chr13	67771723	67771724	rs1983949	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q21.32	NR	rs1983949-A	0.535317591061467	2E-8		0.008316609	[0.0054-0.0112] unit increase	NR [NR]	N
1102	chr13	67771723	67771724	rs1983949	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q21.32	NR	rs1983949-A	0.535317591061467	2E-8		0.005295404	[0.0034-0.0071] unit increase	NR [NR]	N
1102	chr13	67774645	67774646	rs1927820	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q21.32	PCDH9	rs1927820-G	0.845625	2E-15	(PCDH9, 10558_26_3)	0.26567602	[0.2-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1102	chr13	67799296	67799297	rs150733161	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	13q21.32	NR	rs150733161-C		7E-6		0.5354	[0.32-0.76] SD units increase	NR [10700000] (imputed)	N
1102	chr13	67808182	67808183	rs73196184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDH9	5,359 Icelandic ancestry individuals	NA	13q21.32		rs73196184-A	0.1153	2E-24		0.294337	[0.24-0.35] unit increase	Illumina [7506463] (imputed)	N
1102	chr13	67889385	67889386	rs2991396	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	13q21.32	PCDH9	rs2991396-G	0.15	4E-6	(Family size, additive model)			Affymetrix [248210]	N
1103	chr13	67903615	67903616	rs3013580	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 24 weeks)	98 European ancestry cases and controls	NA	13q21.32	intergenic	rs3013580-G	0.59	2E-6	(CGI)	6.23		Illumina [266820] (imputed)	N
1103	chr13	67905236	67905237	rs9571757	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	13q21.32	PCDH9	rs9571757-?	NR	9E-74		1.206	[1.182-1.231]	Illumina [13729857] (imputed)	N
1103	chr13	67933045	67933046	rs146268287	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q21.32	LINC00364	rs146268287-T	0.9917	3E-6		0.1862	[0.11-0.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1103	chr13	67933130	67933131	rs9571771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	13q21.32	PCDH9	rs9571771-A	0.418067	3E-8		5.55	z score increase	NR [10847151] (imputed)	N
1104	chr13	68080613	68080614	rs1892350	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.32	NR	rs1892350-G	0.49085649877145	4E-8		0.005034574	[0.0032-0.0068] unit increase	NR [NR]	N
1104	chr13	68080613	68080614	rs1892350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	13q21.32		rs1892350-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1104	chr13	68080613	68080614	rs1892350	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.32	NR	rs1892350-A	NR	1E-8		5.669	z score decrease	Affymetrix [10847151] (imputed)	N
1104	chr13	68080613	68080614	rs1892350	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q21.32	NR	rs1892350-A	0.490613	7E-10		6.17	z score decrease	NR [10847151] (imputed)	N
1104	chr13	68089044	68089045	rs12869810	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	13q21.32	NR	rs12869810-C	0.5	2E-8		0.009684276	[0.0063-0.0131] unit decrease	Affymetrix [NR] (imputed)	N
1104	chr13	68107860	68107861	rs1937529	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	13q21.32	NR	rs1937529-T	0.521	1E-9		0.00797547	[0.0054-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
1104	chr13	68153204	68153205	rs73504401	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q21.32		rs73504401-?	NR	8E-6		1.0810043	[1.04470231894637-1.1185675713887]	Illumina [up to 7827597] (imputed)	N
1105	chr13	68187402	68187403	rs7336709	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q21.32		rs7336709-A	0.81201	9E-6		0.038184	[0.021-0.055] unit increase	Affymetrix [15580782] (imputed)	N
1105	chr13	68187402	68187403	rs7336709	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q21.32		rs7336709-A	0.81201	7E-8		0.047057	[0.03-0.064] unit increase	Affymetrix [15580782] (imputed)	N
1105	chr13	68202086	68202087	rs6562505	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	13q21.32	NR	rs6562505-?		5E-8				NR [520857]	N
1105	chr13	68202086	68202087	rs6562505	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	13q21.32	NR	rs6562505-?		5E-8				NR [11140414]	N
1105	chr13	68202086	68202087	rs6562505	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	13q21.32	NR	rs6562505-A	NR	5E-8		5.467	z score decrease	Affymetrix [10847151] (imputed)	N
1105	chr13	68234958	68234959	rs141318698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs141318698-G	0.989	4E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1105	chr13	68263278	68263279	rs148342344	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs148342344-G	0.989	4E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1105	chr13	68268011	68268012	rs138607199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs138607199-A	0.989	4E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1105	chr13	68269910	68269911	rs7337043	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,212 White ancestry individuals	NA	13q21.32		rs7337043-?	NR	4E-6		0.02	[0.01-0.03] unit increase	Illumina [7066544] (imputed)	N
1105	chr13	68285491	68285492	rs141455065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs141455065-T	0.992	3E-6	(AA)	0.087	unit increase	Illumina [NR] (imputed)	N
1106	chr13	68309044	68309045	rs141008343	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs141008343-A	0.989	4E-7	(AA)	0.08	unit increase	Illumina [NR] (imputed)	N
1106	chr13	68366200	68366201	rs148788110	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.32	Intergenic	rs148788110-C	0.99	2E-7	(AA)	0.086	unit increase	Illumina [NR] (imputed)	N
1107	chr13	68464762	68464763	rs289055	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	13q21.32	Intergenic	rs289055-G	NR	3E-6		0.134	unit increase	Affymetrix [7969123] (imputed)	N
1107	chr13	68470708	68470709	rs149687631	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	13q21.32	intergenic	rs149687631-G	NR	5E-6		0.7018257	[0.4-1] unit decrease	Illumina [> 6200000] (imputed)	N
1108	chr13	68572036	68572037	rs7318913	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	13q21.32	NR	rs7318913-G	0.049	4E-6		0.242	[0.14-0.34] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1108	chr13	68582969	68582970	rs9630337	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	13q21.32	NR	rs9630337-?		4E-6		6.97	[4.76-9.18] unit increase	Illumina [~ 4900000] (imputed)	N
1108	chr13	68667119	68667120	rs182769203	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	13q21.32	Intergenic	rs182769203-T	NR	6E-6		0.0757377	[0.043-0.109] unit increase	Illumina [13519193] (imputed)	N
1109	chr13	68765049	68765050	rs75670712	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	13q21.33	NR	rs75670712-C	NR	9E-6		1.4932		Affymetrix [8183964] (imputed)	N
1109	chr13	68780209	68780210	rs116982069	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	13q21.33	ELL2P3	rs116982069-G	0.978	6E-6	(Stability score)	2.1584	[1.23-3.09] unit increase	Affymetrix [8042262] (imputed)	N
1112	chr13	69095821	69095822	rs513910	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		13q21.33	RPS3AP52	rs513910-T	0.726	9E-6		0.014	[0.0081-0.0199] dioptres increase	NR [5900115] (imputed)	N
1112	chr13	69111697	69111698	rs479051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q21.33	Intergenic	rs479051-A	0.6754	2E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1112	chr13	69126007	69126008	rs17557610	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.33	Intergenic	rs17557610-C	0.805	1E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1112	chr13	69146185	69146186	rs7321274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.33	Intergenic	rs7321274-A	0.8046	6E-14	(MTAG)	0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1112	chr13	69146185	69146186	rs7321274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.33		rs7321274-A	0.7999	8E-11		0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1112	chr13	69146185	69146186	rs7321274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.33	Intergenic	rs7321274-A	0.7999	3E-13	(MTAG)	0.0119	[0.0088-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1112	chr13	69147327	69147328	rs12863981	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.33	Intergenic	rs12863981-C	0.1952	1E-11	(MTAG)	0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1112	chr13	69147327	69147328	rs12863981	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.33	Intergenic	rs12863981-C	0.2006	7E-11	(MTAG)	0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1113	chr13	69221550	69221551	rs9541479	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q21.33	RPL12P34	rs9541479-T	NR	5E-8		5.463	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1113	chr13	69236477	69236478	rs73206137	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.33		rs73206137-T	0.613	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1113	chr13	69332014	69332015	rs2174752	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q21.33	LINC00550	rs2174752-G	0.547355	6E-10		0.0127713	[0.0087-0.0168] unit increase	NR [16516521] (imputed)	N
1114	chr13	69344133	69344134	rs7338774	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q21.33	NA	rs7338774-G	0.3298	5E-9	(Female)	1.0471205	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1114	chr13	69344133	69344134	rs7338774	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q21.33	NR	rs7338774-A	0.329767	2E-9		6.01	z score decrease	NR [10847151] (imputed)	N
1114	chr13	69347900	69347901	rs7993004	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.33	RN7SL761P	rs7993004-A	NR	2E-8		0.0097843	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
1114	chr13	69370300	69370301	rs7999314	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs7999314-T	NR	7E-10		6.172	z score increase	Affymetrix [10847151] (imputed)	N
1114	chr13	69370300	69370301	rs7999314	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	13q21.33	intergenic	rs7999314-T	0.31908	2E-10		6.37	z score increase	Illumina [18485882] (imputed)	N
1114	chr13	69372699	69372700	rs9564496	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.33	NR	rs9564496-A	0.318386555429878	2E-11		0.0066501196	[0.0047-0.0086] unit increase	NR [NR]	N
1114	chr13	69372699	69372700	rs9564496	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q21.33	NR	rs9564496-A	0.318386555429878	6E-11		0.008058801	[0.0056-0.0105] unit increase	NR [NR]	N
1114	chr13	69372699	69372700	rs9564496	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q21.33	NR	rs9564496-A	0.318386555429878	3E-11		0.010474703	[0.0074-0.0136] unit increase	NR [NR]	N
1114	chr13	69372699	69372700	rs9564496	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q21.33	NR	rs9564496-A	0.318386555429878	1E-10		0.008539927	[0.0059-0.0111] unit increase	NR [NR]	N
1114	chr13	69372699	69372700	rs9564496	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q21.33	NR	rs9564496-A	0.318386555429878	3E-11		0.006675278	[0.0047-0.0086] unit increase	NR [NR]	N
1114	chr13	69412819	69412820	rs9572028	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	13q21.33	NR	rs9572028-A	NR	4E-7		0.021122977	[0.013-0.029] unit increase	Illumina [NR] (imputed)	N
1115	chr13	69473318	69473319	rs13313261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q21.33		rs13313261-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1115	chr13	69488907	69488908	rs716513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q21.33		rs716513-A	0.536	3E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1115	chr13	69488907	69488908	rs716513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q21.33	Intergenic	rs716513-A	0.536	4E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1115	chr13	69489758	69489759	rs6562541	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	PCDH9	rs6562541-?	NR	8E-7	(arginine)	0.21326911	[0.13-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1115	chr13	69518578	69518579	rs8002150	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.33	ZDHHC20P4	rs8002150-A	NR	2E-9		0.010424	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
1115	chr13	69524674	69524675	rs9541641	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	13q21.33	NR	rs9541641-T	NR	3E-6		0.087	[0.05-0.124] unit decrease	Illumina [6319684] (imputed)	N
1115	chr13	69525778	69525779	rs71427690	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.33	NR	rs71427690-T	0.167	3E-10		0.00911314	[0.0063-0.012] unit increase	NR [9732723] (imputed)	N
1115	chr13	69530663	69530664	rs2066219	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	13q21.33	intergenic	rs2066219-?	NR	9E-6	(ISI_0-120)			Affymetrix [70897]	N
1115	chr13	69533072	69533073	rs9572053	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q21.33	NR	rs9572053-A	0.2239	7E-6		0.0139	[0.0078-0.02] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1115	chr13	69535359	69535360	rs9541650	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.33	ZDHHC20P4	rs9541650-C	NR	7E-9		0.010098	[0.0067-0.0135] unit increase	Affymetrix [18485882] (imputed)	N
1115	chr13	69537550	69537551	rs2096031	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	13q21.33	NR	rs2096031-T	0.7316	5E-6		0.0178	[0.01-0.025] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1115	chr13	69541136	69541137	rs8001018	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q21.33	NR	rs8001018-T	0.7248	3E-6		0.0154078845	[0.0089-0.0219] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1115	chr13	69568435	69568436	rs9541683	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	13q21.33	intergenic	rs9541683-C	0.70157	9E-10		6.134	z score increase	Illumina [18485882] (imputed)	N
1115	chr13	69568611	69568612	rs9541684	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.33	ZDHHC20P4	rs9541684-A	NR	6E-9		0.010059	[0.0067-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
1115	chr13	69571603	69571604	rs9541694	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	13q21.33	ZDHHC20P4	rs9541694-A	0.3072	3E-12		0.017740354	[0.012-0.023] unit decrease	NR [9417325] (imputed)	N
1115	chr13	69575183	69575184	rs77607745	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	13q21.33	NR	rs77607745-C	NR	5E-8		0.01614	[0.01-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1115	chr13	69576366	69576367	rs9317758	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	13q21.33	ZDHHC20P4	rs9317758-T	0.4304	2E-15		0.018032202	[0.013-0.023] unit decrease	NR [9417325] (imputed)	N
1115	chr13	69576366	69576367	rs9317758	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs9317758-T	NR	4E-9		5.895	z score decrease	Affymetrix [10847151] (imputed)	N
1115	chr13	69576974	69576975	rs2210903	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	13q21.33	NR	rs2210903-G	0.3692	1E-9		0.01168	[0.0079-0.0154] unit decrease	NR [8968716] (imputed)	N
1115	chr13	69576974	69576975	rs2210903	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q21.33	ZDHHC20P4	rs2210903-G	NR	2E-9		0.01041	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
1115	chr13	69580505	69580506	rs8002479	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs8002479-T	NR	1E-9		6.08	z score decrease	Affymetrix [10847151] (imputed)	N
1115	chr13	69581084	69581085	rs11841876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	13q21.33		rs11841876-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1115	chr13	69581551	69581552	rs9541703	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q21.33	NR	rs9541703-T	0.297882	7E-9		5.79	z score increase	NR [10847151] (imputed)	N
1115	chr13	69583613	69583614	rs77129413	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.33	NR	rs77129413-A	0.102142723908443	4E-8		0.008336311	[0.0054-0.0113] unit decrease	NR [NR]	N
1116	chr13	69606141	69606142	rs74677756	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	13q21.33	KLHL1	rs74677756-?	NR	6E-15		1.089	[1.066-1.113]	Illumina [13729857] (imputed)	N
1116	chr13	69619665	69619666	rs9529502	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs9529502-A	NR	4E-8		5.47	z score decrease	Affymetrix [10847151] (imputed)	N
1116	chr13	69624386	69624387	rs182667038	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	13q21.33	intergenic	rs182667038-A	0.0044	3E-6		0.2977	[0.17-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1116	chr13	69642933	69642934	rs945617	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs945617-T	NR	1E-8		5.711	z score increase	Affymetrix [10847151] (imputed)	N
1116	chr13	69659759	69659760	rs9599394	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.33	Intergenic	rs9599394-T	0.951	3E-6	(AA)	0.034	unit increase	Illumina [NR] (imputed)	N
1116	chr13	69669256	69669257	rs2152701	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs2152701-A	NR	1E-8		5.686	z score decrease	Affymetrix [10847151] (imputed)	N
1116	chr13	69676333	69676334	rs9599403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q21.33	Intergenic	rs9599403-A	0.934	3E-6	(AA)	0.03	unit increase	Illumina [NR] (imputed)	N
1116	chr13	69683173	69683174	rs10220253	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	13q21.33	LOC7302394, LOC100128625	rs10220253-?	NR	6E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1116	chr13	69720693	69720694	rs4883839	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	13q21.33	intergenic	rs4883839-T	0.28153333333333336	8E-6		0.8519	[0.48-1.23] unit increase	Affymetrix [NR] (imputed)	N
1117	chr13	69748309	69748310	rs555898082	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	13q21.33	LINC00383	rs555898082-A	0.9986	4E-7		1.0901	[0.67-1.51] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1117	chr13	69810230	69810231	rs9541841	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.33	NR	rs9541841-?	NR	8E-8				Affymetrix [NR]	N
1117	chr13	69847017	69847018	rs117823901	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	13q21.33	LINC00383	rs117823901-C	0.028043892	4E-6		1.5131308	[1.268374289-1.805117729]	Illumina [10439017] (imputed)	N
1117	chr13	69857607	69857608	rs7989827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q21.33	NR	rs7989827-G	0.491061030600168	1E-10		0.005934807	[0.0041-0.0077] unit decrease	NR [NR]	N
1117	chr13	69857607	69857608	rs7989827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q21.33	NR	rs7989827-G	0.491061030600168	1E-10		0.0072609005	[0.005-0.0095] unit decrease	NR [NR]	N
1117	chr13	69857607	69857608	rs7989827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q21.33	NR	rs7989827-G	0.491061030600168	1E-10		0.009457398	[0.0066-0.0123] unit decrease	NR [NR]	N
1117	chr13	69857607	69857608	rs7989827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q21.33	NR	rs7989827-G	0.491061030600168	3E-10		0.0077179144	[0.0053-0.0101] unit decrease	NR [NR]	N
1117	chr13	69857607	69857608	rs7989827	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q21.33	NR	rs7989827-G	0.491061030600168	1E-10		0.0060469275	[0.0042-0.0079] unit decrease	NR [NR]	N
1118	chr13	69885690	69885691	rs1249773	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q21.33	NR	rs1249773-T	NR	5E-8		5.456	z score decrease	Affymetrix [10847151] (imputed)	N
1118	chr13	69899505	69899506	rs9529561	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	13q21.33	LINC00550, KLHL1	rs9529561-G	0.08	3E-7	(European)	3.9		Illumina [7993459] (imputed)	N
1118	chr13	69903057	69903058	rs2593487	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q21.33		rs2593487-A	0.3388	3E-10		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1118	chr13	69903057	69903058	rs2593487	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.33	KLHL1	rs2593487-G	0.6638999999999999	2E-12		1.02891		Affymetrix [11880941] (imputed)	N
1118	chr13	69919398	69919399	rs2593525	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q21.33	KLHL1	rs2593525-C	0.01	2E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1118	chr13	69948908	69948908	rs200799735	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q21.33	intergenic	rs200799735-CA	NR	3E-7	(AA)			Illumina [up to 11995908] (imputed)	N
1118	chr13	69953490	69953491	rs9599459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	DACH1	rs9599459-?	NR	3E-6	(choline)	1.0154067	[0.59-1.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1119	chr13	70019367	70019368	rs352242	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	13q21.33	NR	rs352242-C	0.6025	4E-6		0.0163	[0.0094-0.0232] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1119	chr13	70023684	70023685	rs352236	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q21.33	KLHL1	rs352236-G	0.01	2E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1119	chr13	70086329	70086330	rs9572182	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	13q21.33	KLHL1, LOC100128625	rs9572182-T	0.499	4E-7	(Protein (control))			Affymetrix [590000]	N
1120	chr13	70190188	70190188	rs34720604	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	13q21.33	NR	rs34720604-?	NR	4E-6		0.143934	[0.083-0.205] unit decrease	NR [13958389] (imputed)	N
1121	chr13	70294941	70294942	rs116945011	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	13q21.33		rs116945011-?	NR	1E-5		0.41	[0.23-0.59] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1121	chr13	70302177	70302178	rs9572250	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	13q21.33	KLHL1	rs9572250-?	NR	8E-6		0.44	[0.31-0.63]	NR [341191]	N
1121	chr13	70304642	70304643	rs12021017	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q21.33	NR	rs12021017-?	NR	2E-6				Affymetrix [NR]	N
1121	chr13	70320254	70320255	rs73504006	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	13q21.33	NR	rs73504006-?	NR	7E-6		0.3433	[0.19-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1122	chr13	70399002	70399003	rs9542094	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q21.33	Intergenic	rs9542094-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
1122	chr13	70422661	70422662	rs61963755	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	13q21.33	KLHL1	rs61963755-?		2E-6		0.674	[NR] unit increase	Illumina [6030476] (imputed)	N
1122	chr13	70430092	70430093	rs2325244	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	13q21.33	KLHL1	rs2325244-?	NR	8E-7	(SF3)			Affymetrix [5476100] (imputed)	N
1122	chr13	70454959	70454960	rs11843309	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	13q21.33	KLHL1	rs11843309-T	0.062	7E-6		0.212	[0.12-0.304] unit increase	Affymetrix [808465]	N
1122	chr13	70455660	70455661	rs7984606	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q21.33	KLHL1	rs7984606-?	0.01081	8E-6	(PAL6)			Illumina [475971]	N
1122	chr13	70474254	70474255	rs59988404	32740585	Sood RF	2020-08-01	Plast Reconstr Surg	Genetic Risk of Trigger Finger: Results of a Genomewide Association Study.	Trigger finger	942 European ancestry cases, 24,472 European ancestry controls	NA	13q21.33	KLHL1, PSMC1P13	rs59988404-C	0.05	2E-10		1.74	[1.47-2.07]	Illumina [7846471] (imputed)	N
1122	chr13	70486965	70486966	rs148383881	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-269 sp001916065 abundance in stool	5,959 Finnish ancestry individuals	NA	13q21.33		rs148383881-A	0.0165324	1E-8		0.355736	[0.23-0.48] unit increase	Illumina [7980478] (imputed)	N
1122	chr13	70507435	70507436	rs146080637	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q21.33	NR	rs146080637-G	0.0122	1E-8	(JAK3)	0.0848	NR unit increase	Illumina [1671387] (imputed)	N
1123	chr13	70526245	70526246	rs73212551	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	13q21.33	KLHL1	rs73212551-?	NR	9E-6		2.87		Illumina [6778521] (imputed)	N
1123	chr13	70579526	70579527	rs9542155	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q21.33	KLHL1	rs9542155-T	0.32	2E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1123	chr13	70579526	70579527	rs9542155	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q21.33	KLHL1	rs9542155-?	NR	2E-11		1.06	[1.042-1.078]	Illumina [13757430] (imputed)	N
1123	chr13	70635409	70635410	rs17742723	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (time to childhood onset) in early life tobacco smoke exposure	3,187 European ancestry individuals	NA	13q21.33	KLHL1	rs17742723-T	0.14	2E-6		1.35	[1.20-1.54]	Illumina [2110000] (imputed)	N
1123	chr13	70645871	70645872	rs7334050	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (time to childhood onset) x early life tobacco smoke interaction	3,187 European ancestry exposed individuals, 5,086 European ancestry unexposed individuals	NA	13q21.33	KLHL1	rs7334050-G	0.14	4E-8		1.58	[1.34-1.86]	Illumina [2110000] (imputed)	N
1124	chr13	70658403	70658404	rs1550546	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	13q21.33	KLHL1, DACH1	rs1550546-T	0.57	4E-6	(VPWL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
1124	chr13	70703214	70703215	rs9564655	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	13q21.33	ATXN8OS	rs9564655-?	NR	2E-6		0.3	[0.18-0.42] unit decrease	Illumina [5574300] (imputed)	N
1124	chr13	70719461	70719462	rs302010	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q21.33	NR	rs302010-G	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1124	chr13	70726817	70726818	rs148252511	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	13q21.33	NR	rs148252511-?	NR	2E-6		0.1229	[0.072-0.174] unit decrease	Illumina [at least 560000] (imputed)	N
1124	chr13	70749168	70749169	rs2479921	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	13q21.33	intergenic	rs2479921-?	0.18	3E-6	(adjusted for CYP2C19*2)	0.16	NR unit increase	Illumina [5009928] (imputed)	N
1125	chr13	70810222	70810223	rs1928007	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		13q21.33	intergenic	rs1928007-A	0.91	5E-6		0.108	[0.061-0.155] unit decrease	Illumina [~ 2400000] (imputed)	N
1125	chr13	70846202	70846203	rs9572423	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	13q21.33	intergenic	rs9572423-G	0.88	9E-6		1.54		Affymetrix [671424]	N
1125	chr13	70880317	70880318	rs74954997	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q21.33	NR	rs74954997-C	0.01045	3E-8	(COQ9)	0.01649	NR unit increase	Illumina [1671387] (imputed)	N
1125	chr13	70894607	70894608	rs74239711	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q21.33	NR	rs74239711-T	0.01045	3E-8	(COQ9)	0.01649	NR unit increase	Illumina [1671387] (imputed)	N
1127	chr13	71143778	71143779	rs77977972	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lachnoanaerobaculum saburreum abundance in stool	5,959 Finnish ancestry individuals	NA	13q21.33		rs77977972-A	0.055621	3E-8		0.0764924	[0.049-0.104] unit increase	Illumina [7980478] (imputed)	N
1128	chr13	71229045	71229046	rs79386556	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	13q21.33	LINC00348	rs79386556-A	0.04	2E-6		0.113	[0.068-0.158] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1128	chr13	71236606	71236607	rs670179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q21.33		rs670179-A	NR	6E-23		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1128	chr13	71236606	71236607	rs670179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q21.33		rs670179-A	0.574298	6E-49		0.03367816	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr13	71236606	71236607	rs670179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q21.33		rs670179-A	0.574295	1E-23		0.022919087	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr13	71236606	71236607	rs670179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs670179-A	0.485435	4E-36				Affymetrix, Illumina [24588908] (imputed)	N
1128	chr13	71236606	71236607	rs670179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q21.33	NR	rs670179-A	0.575332	5E-32		0.021935	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1128	chr13	71236606	71236607	rs670179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q21.33	intergenic	rs670179-A	0.5722	3E-14		0.02821364	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1128	chr13	71236610	71236611	rs670180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q21.33		rs670180-A	NR	4E-8		0.0119	[0.0076-0.0162] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q21.33		rs670180-A	0.57449	3E-9		0.013531686	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q21.33		rs670180-A	0.574622	3E-11		0.014885776	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs670180-T	0.431546	1E-13				Affymetrix, Illumina [17210439] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q21.33	NR	rs670180-T	0.425531	4E-14		0.014772	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs670180-A	0.497226	4E-11				Affymetrix, Illumina [24246363] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q21.33	NR	rs670180-A	0.575108	5E-11		0.012149	[0.0085-0.0158] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs670180-A	0.490199	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
1128	chr13	71236610	71236611	rs670180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q21.33	NR	rs670180-A	0.574353	4E-14		0.014773	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1128	chr13	71236610	71236611	rs670180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q21.33		rs670180-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1128	chr13	71236610	71236611	rs670180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q21.33	intergenic	rs670180-A	0.5723	3E-24		0.03792309	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1128	chr13	71249528	71249529	rs186967887	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q21.33	NR	rs186967887-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1128	chr13	71257302	71257303	rs337939	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q21.33	RNU6-54P	rs337939-T	NR	3E-8		0.016314344	[0.011-0.022] unit increase	Affymetrix [NR]	N
1128	chr13	71257993	71257994	rs337940	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q21.33	RNU6-54P	rs337940-T	0.4267	3E-8		0.011320835	[0.0073-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1128	chr13	71280382	71280383	rs9572533	34815687	Wu SE	2021-11-16	J Inflamm Res	A Genome-Wide Association Study Identifies Novel Risk Loci for Sarcopenia in a Taiwanese Population.	Low hand grip strength	34 Taiwanese ancestry cases, 62 Taiwanese ancestry controls	NA	13q21.33		rs9572533-?	0.1562	5E-6		5.997		Affymetrix [NR]	N
1128	chr13	71294828	71294829	rs12854077	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	13q21.33	DACH1, ATXN80S	rs12854077-T	0.395511	5E-7		0.765	[0.69 - 0.85]	Illumina [5400100] (imputed)	N
1128	chr13	71299814	71299817	rs145427387	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	13q21.33	intergenic	rs145427387-?	NR	4E-6		2.33	[1.66-3.29]	Illumina [654642] (imputed)	N
1129	chr13	71340653	71340654	rs77584330	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	13q21.33		rs77584330-G	NR	3E-6	(GLM)	9.5184	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1129	chr13	71357989	71357990	rs139612726	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q21.33	NR	rs139612726-?	NR	8E-8	(Japanese)	0.8006	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1130	chr13	71520832	71520833	rs79538982	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q21.33	NR	rs79538982-G	NR	2E-9	(GEE model)	1.4337	[0.96-1.9] unit decrease	NR [NR] (imputed)	N
1130	chr13	71547511	71547512	rs9542550	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	13q21.33	NR	rs9542550-C	NR	7E-6		2730.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1130	chr13	71553747	71553748	rs34399104	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	13q21.33	NR	rs34399104-?	NR	4E-11		0.09752612	[0.069-0.126] unit increase	Illumina [7519308] (imputed)	N
1130	chr13	71559008	71559009	rs803821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q21.33		rs803821-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1130	chr13	71560370	71560371	rs803823	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	13q21.33	CCDC165P1, RABEPKP1	rs803823-A	0.06	2E-7		0.53	[0.33-0.73] unit increase	Illumina [8056701] (imputed)	N
1131	chr13	71595309	71595310	rs78319313	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	13q21.33	LINC00348	rs78319313-?	NR	3E-6		0.49	[0.27-0.71] unit increase	Illumina [1075436] (imputed)	N
1131	chr13	71599301	71599302	rs803804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q21.33	Intergenic	rs803804-T	0.6381	3E-8	(MTAG)	0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr13	71621123	71621124	rs803786	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q21.33	Intergenic	rs803786-A	0.6112	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr13	71646253	71646254	rs1467627	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q21.33	NR	rs1467627-?		5E-7				Illumina [4322238] (imputed)	N
1131	chr13	71646253	71646254	rs1467627	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q21.33	NR	rs1467627-?		2E-6				Illumina [4322238] (imputed)	N
1131	chr13	71646253	71646254	rs1467627	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q21.33	NR	rs1467627-?		9E-6				Illumina [4322238] (imputed)	N
1131	chr13	71646253	71646254	rs1467627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.33	Intergenic	rs1467627-A	0.6443	3E-11	(MTAG)	0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr13	71647587	71647588	rs803765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q21.33		rs803765-A	NR	5E-9		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1131	chr13	71647587	71647588	rs803765	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs803765-A	0.327316	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1131	chr13	71647587	71647588	rs803765	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs803765-A	0.328446	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1131	chr13	71647587	71647588	rs803765	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q21.33	LINC00348	rs803765-A	0.3452	2E-23		0.0245	[0.02-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1131	chr13	71647587	71647588	rs803765	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	13q21.33	LINC00348	rs803765-A	0.3452	1E-15		0.0195	[0.015-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1131	chr13	71647587	71647588	rs803765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q21.33		rs803765-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1131	chr13	71656672	71656673	rs803867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q21.33		rs803867-T	NR	3E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1131	chr13	71658550	71658551	rs144654648	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	13q21.33	NR	rs144654648-C	0.987974	7E-6		0.389	[0.22-0.56] unit increase	NR [9260588] (imputed)	N
1131	chr13	71689026	71689027	rs35756579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.33	Intergenic	rs35756579-T	0.3165	2E-11	(MTAG)	0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr13	71689026	71689027	rs35756579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q21.33	Intergenic	rs35756579-C	0.6835	6E-11		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr13	71694684	71694685	rs61957926	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	13q21.33	LINC00348	rs61957926-T	0.399	4E-6		0.019	[0.011-0.027] unit increase	Illumina [7358575] (imputed)	N
1132	chr13	71714716	71714717	rs8000803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q21.33	LINC00348	rs8000803-T	0.595352	3E-12		0.015721178	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr13	71714716	71714717	rs8000803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q21.33	LINC00348	rs8000803-T	0.595359	2E-13		0.016620254	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1132	chr13	71718556	71718557	rs9542593	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q21.33	NR	rs9542593-A	0.59307	9E-11		0.012254	[0.0086-0.016] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1132	chr13	71718556	71718557	rs9542593	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q21.33	NR	rs9542593-A	0.592938	3E-12		0.01316	[0.0095-0.0169] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1132	chr13	71808424	71808425	rs9542622	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q21.33	NR	rs9542622-?	NR	4E-6		4.86	[3.66-6.45]	Illumina [539000] (imputed)	N
1133	chr13	71852182	71852183	rs190849714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q21.33	RABEPKP1	rs190849714-A	0.9954	4E-6		1.1892	[0.68-1.7] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1133	chr13	71871525	71871526	rs61956285	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q21.33	Intergenic	rs61956285-T	NR	1E-6	(between families)	4.902	unit increase	Affymetrix [up to 15107142] (imputed)	N
1133	chr13	71883213	71883214	rs9592783	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q21.33	DACH1	rs9592783-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1133	chr13	71895297	71895298	rs2325377	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	13q21.33	DACH1	rs2325377-?	NR	3E-7		5.105	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1134	chr13	71984565	71984566	rs9564825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9564825-?	NR	8E-6	(TAG 50:4)	0.22745359	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72001347	72001348	rs9592793	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9592793-?	NR	6E-6	(TAG 52:6)	0.75351936	[0.43-1.08] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72001347	72001348	rs9592793	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9592793-?	NR	2E-6	(TAG 48:3)	0.7948211	[0.47-1.12] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72001660	72001661	rs74095902	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	13q21.33	intergenic	rs74095902-?	NR	8E-6		2.3337548	[1.61-3.39]	Illumina [at least 4483243] (imputed)	N
1134	chr13	72016056	72016057	rs9318024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9318024-?	NR	2E-6	(TAG 52:5)	0.27203262	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72016056	72016057	rs9318024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9318024-?	NR	2E-6	(TAG 52:4)	0.2730468	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72016056	72016057	rs9318024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9318024-?	NR	2E-6	(TAG 50:5)	0.27472022	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72039079	72039080	rs9652235	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9652235-?	NR	3E-6	(PC 34:4)	0.7965447	[0.46-1.13] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1134	chr13	72048095	72048096	rs9599848	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	13q21.33	DACH1	rs9599848-?		9E-6				Illumina [859311]	N
1135	chr13	72096528	72096529	rs9599853	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9599853-?	NR	8E-7	(TAG 50:4)	0.7607203	[0.46-1.06] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1135	chr13	72096528	72096529	rs9599853	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs9599853-?	NR	4E-6	(TAG 48:4)	0.7070389	[0.41-1.01] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1135	chr13	72174352	72174353	rs9919839	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	13q21.33	DACH1	rs9919839-?	NR	2E-6	(Total LTG and PHT)			Illumina [NR]	N
1136	chr13	72237747	72237748	rs7982150	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	13q21.33	DACH1	rs7982150-C	NR	5E-6		0.962	[0.946- 0.978]	Illumina [6740241] (imputed)	N
1136	chr13	72337753	72337754	rs1325339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	13q21.33		rs1325339-C	0.852189	1E-10		0.0306123	[0.021-0.04] unit decrease	Illumina [13478792] (imputed)	N
1136	chr13	72337753	72337754	rs1325339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	13q21.33	DACH1	rs1325339-?	NR	2E-12		0.03503	[0.025-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1136	chr13	72340142	72340143	rs303968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q21.33	DACH1	rs303968-C	0.398446	8E-22		0.022231411	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1136	chr13	72340142	72340143	rs303968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q21.33	DACH1	rs303968-C	0.39844	4E-15		0.018207438	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1136	chr13	72340261	72340262	rs7331398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	13q21.33		rs7331398-C	NR	1E-14		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1136	chr13	72340261	72340262	rs7331398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q21.33		rs7331398-C	NR	4E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1136	chr13	72342604	72342605	rs9572786	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	13q21.33	NR	rs9572786-A	0.62	1E-18		0.0166	[0.013-0.02] unit increase	NR [NR]	N
1136	chr13	72342604	72342605	rs9572786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q21.33	DACH1	rs9572786-G	0.3775	2E-11		0.02523779	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1136	chr13	72345088	72345089	rs9529913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q21.33		rs9529913-T	NR	2E-28		0.0197	[0.016-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1136	chr13	72345088	72345089	rs9529913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	13q21.33		rs9529913-T	0.147725	3E-14		0.0304928	[0.023-0.038] unit increase	Illumina [13478778] (imputed)	N
1136	chr13	72345088	72345089	rs9529913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q21.33		rs9529913-T	NR	8E-36		0.0263	[0.022-0.03] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1136	chr13	72345088	72345089	rs9529913	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	13q21.33	DACH1	rs9529913-C	0.6907	2E-26		10.658	NR z score increase	Illumina [26237160] (imputed)	N
1136	chr13	72345088	72345089	rs9529913	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		13q21.33	DACH1	rs9529913-T	NR	3E-11		0.0066	[0.0048-0.0084] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1136	chr13	72345504	72345505	rs584480	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	13q21.33	DACH1	rs584480-T	0.5001	1E-15		0.006	[0.0046-0.0074] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1136	chr13	72345504	72345505	rs584480	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	13q21.33	DACH1	rs584480-C	0.369	2E-19		0.298	[0.11-0.48] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1136	chr13	72345504	72345505	rs584480	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	13q21.33	DACH1	rs584480-T	0.40	9E-6		0.023	[0.013-0.033] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1136	chr13	72347447	72347448	rs716877	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	13q21.33	DACH1	rs716877-?	NR	4E-13		0.03724	[0.027-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1136	chr13	72347447	72347448	rs716877	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	13q21.33	DACH1	rs716877-C	0.4	6E-8	(EA)	0.0049	[0.0031-0.0067] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1136	chr13	72347695	72347696	rs626277	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	13q21.33	DACH1	rs626277-A	0.4985	4E-14		0.0253	[0.019-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1136	chr13	72347695	72347696	rs626277	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	13q21.33	DACH1	rs626277-A	0.5938	3E-11		0.025914	[0.018-0.034] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1136	chr13	72347695	72347696	rs626277	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	13q21.33	NR	rs626277-A	0.5344	3E-7	(men)	0.0282	[0.017-0.039] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1136	chr13	72347695	72347696	rs626277	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	13q21.33	DACH1	rs626277-A	0.558	7E-8	(EA)	0.021428572	[0.014-0.029] unit increase	Illumina [1986983] (imputed)	N
1136	chr13	72347695	72347696	rs626277	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	13q21.33	DACH1	rs626277-?	NR	4E-13		0.03798	[0.028-0.048] unit increase novel	Illumina [6108953] (imputed)	N
1136	chr13	72347695	72347696	rs626277	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	13q21.33	DACH1	rs626277-A	NR	1E-7		0.0049	[0.0031-0.0067] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1136	chr13	72347695	72347696	rs626277	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	13q21.33	DACH1	rs626277-C	0.4	3E-11	(eGFRcrea)	0.01	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1136	chr13	72348767	72348768	rs500830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs500830-T	0.49425	6E-17				Affymetrix, Illumina [24588908] (imputed)	N
1136	chr13	72348767	72348768	rs500830	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	13q21.33	DACH1	rs500830-T	0.4603	5E-28		0.0029	[0.0023-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1136	chr13	72348767	72348768	rs500830	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	13q21.33	DACH1	rs500830-T	0.8517	3E-8		0.0052	[0.0034-0.007] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1137	chr13	72364381	72364382	rs3861113	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	13q21.33	DACH1	rs3861113-C	0.9175	4E-11		0.2126	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1137	chr13	72365325	72365326	rs303949	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	13q21.33	DACH1	rs303949-C	0.091547	4E-8		0.075260244	[0.048-0.102] unit increase	Affymetrix [7288503] (imputed)	N
1137	chr13	72366051	72366052	rs303948	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q21.33		rs303948-A	0.907	2E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1137	chr13	72366051	72366052	rs303948	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q21.33	NR	rs303948-G	0.0974	3E-10		0.0114377	[0.0079-0.015] unit increase	NR [9732723] (imputed)	N
1137	chr13	72367371	72367372	rs9572788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q21.33	NR	rs9572788-T	0.376423	2E-19		0.017178	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1137	chr13	72369158	72369159	rs487107	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	13q21.33	DACH1	rs487107-T	0.441	2E-11		0.358	[0.25-0.46] unit increase	Affymetrix [NR] (imputed)	N
1137	chr13	72371414	72371415	rs303940	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q21.33		rs303940-G	0.605	2E-9				Affymetrix [10369434] (imputed)	N
1137	chr13	72371720	72371721	rs9599885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q21.33	NR	rs9599885-A	NR	6E-17		0.0219	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr13	72371720	72371721	rs9599885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	13q21.33	NR	rs9599885-A	NR	4E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr13	72371720	72371721	rs9599885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q21.33	NR	rs9599885-A	NR	2E-22		0.0255	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr13	72372523	72372524	rs303937	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	13q21.33	DACH1	rs303937-A	0.4103	3E-14	(EA)	0.0027	[0.0019-0.0035] unit increase	Affymetrix [NR] (imputed)	N
1137	chr13	72372523	72372524	rs303937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	13q21.33	DACH1	rs303937-A	0.4103	1E-23		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1137	chr13	72374848	72374849	rs9318032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	13q21.33		rs9318032-A	NR	4E-9		0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1137	chr13	72375010	72375010	rs5804584	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q21.33	NR	rs5804584-?	NR	7E-9	(right vessel)			NR [9227495] (imputed)	N
1137	chr13	72403249	72403250	rs73215273	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	13q21.33	NR	rs73215273-C	0.09999999999999998	9E-6		1.5151515	[1.27-1.85]	NR [8814543] (imputed)	N
1137	chr13	72406727	72406728	rs17088512	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	13q21.33	DACH1	rs17088512-?	NR	7E-9		0.025	[0.017-0.033] unit decrease	Illumina [30613845] (imputed)	N
1137	chr13	72450626	72450627	rs117953762	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	13q21.33		rs117953762-T	0.98	2E-6		0.1806	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1137	chr13	72461128	72461129	rs1853791	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	13q21.33	DACH1	rs1853791-?	NR	2E-6				Affymetrix [753382]	N
1137	chr13	72480879	72480880	rs2061543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q21.33		rs2061543-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1138	chr13	72503637	72503638	rs67483792	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q21.33		rs67483792-C	0.957	2E-23				Affymetrix [10369434] (imputed)	N
1138	chr13	72503637	72503638	rs67483792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs67483792-T	0.0440466	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
1138	chr13	72503637	72503638	rs67483792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q21.33	NR	rs67483792-T	0.042874	8E-14		0.035358	[0.026-0.045] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1138	chr13	72505307	72505308	rs1824465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q21.33		rs1824465-C	NR	8E-12		0.0352	[0.025-0.045] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1138	chr13	72506854	72506854	rs557871456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q21.33		rs557871456-CA	0.047942	4E-12		0.036524627	[0.026-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1138	chr13	72506854	72506854	rs557871456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q21.33		rs557871456-CA	0.047941	4E-10		0.032925386	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q21.33		rs73217470-G	NR	4E-19		0.0494	[0.039-0.06] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q21.33		rs73217470-G	0.046956	3E-40		0.07016821	[0.06-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q21.33		rs73217470-G	0.046953	2E-33		0.06342256	[0.053-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q21.33	NR	rs73217470-G	0.0456157	6E-45				Affymetrix, Illumina [23467995] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q21.33	NR	rs73217470-G	0.046722	2E-47		0.064788	[0.056-0.074] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q21.33	intergenic	rs73217470-G	0.0476	1E-23		0.08493428	[0.068-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q21.33	intergenic	rs73217470-G	0.0476	1E-16		0.07056657	[0.054-0.087] unit increase	Affymetrix [~ 2500000] (imputed)	N
1138	chr13	72513419	72513420	rs73217470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q21.33	intergenic	rs73217470-G	0.0476	4E-14		0.06430747	[0.048-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1138	chr13	72521835	72521836	rs9542788	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q21.33	NR	rs9542788-?	NR	5E-8				Illumina [7760689] (imputed)	N
1139	chr13	72667744	72667747	rs149955361	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	13q21.33		rs149955361-T	NR	3E-7		1.04917		Affymetrix, Illumina [62056310] (imputed)	N
1139	chr13	72688773	72688774	rs9652236	22889921	Stewart SE	2012-08-14	Mol Psychiatry	Genome-wide association study of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,279 European ancestry cases, 5,139 European ancestry controls, 299 European ancestry trios, 93 South African Afrikaner ancestry cases, 158  South African Afrikaner ancestry controls, 93 Ashkenazi Jewish cases, 260 Ashkenazi Jewish controls, 101 Hispanic and unknown ancestry trios	NA	13q21.33	DACH1, MZT1	rs9652236-?	NR	5E-6		1.4	NR	Illumina [479067]	N
1139	chr13	72733907	72733908	rs339800	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	13q21.33	DACH1	rs339800-T	0.28	7E-8		1.06	[1.04-1.08]	NR [~ 8000000] (imputed)	N
1140	chr13	72767168	72767168	rs147010738	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	13q21.33	DACH1	rs147010738-?		1E-6				Illumina [7405822] (imputed)	N
1140	chr13	72768708	72768709	rs4083578	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q21.33	AL445923.10	rs4083578-?	0.2874	8E-6	(SWM strategy)			Illumina [475971]	N
1140	chr13	72799173	72799174	rs11617316	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q21.33	LOC440145	rs11617316-?	NR	5E-8	(CE 14:0)	0.24632245	[0.16-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1140	chr13	72802378	72802379	rs57355895	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	13q21.33		rs57355895-C	0.12	1E-9		1.24		NR [NR] (imputed)	N
1140	chr13	72848155	72848156	rs340561	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	13q21.33	NR	rs340561-T	0.2	3E-10		1.08	[1.06-1.10]	Affymetrix, Illumina [15838848] (imputed)	N
1140	chr13	72848155	72848156	rs340561	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	13q21.33	DACH1, DIS3	rs340561-T	0.2	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6864281] (imputed)	N
1140	chr13	72872205	72872206	rs1146849	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (sad faces)	4,097 European ancestry individuals	NA	13q21.33	intergenic	rs1146849-A	0.278	4E-6		4.6	z score decrease	Illumina [2487351] (imputed)	N
1141	chr13	72919799	72919800	rs495593	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q21.33	DACH1, MZT1	rs495593-A	0.7383	4E-9		1.0228573		Affymetrix [11880941] (imputed)	N
1141	chr13	72933969	72933970	rs529059	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	13q21.33		rs529059-A	NR	2E-8		0.0308	[0.02-0.042] unit decrease	Affymetrix [6193476] (imputed)	N
1141	chr13	72938377	72938378	rs190265096	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	13q21.33		rs190265096-C	NR	1E-5		5.011	[2.83-7.19] unit decrease	Illumina [NR] (imputed)	N
1141	chr13	72958252	72958253	rs73525753	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	13q21.33		rs73525753-G	0.970573	6E-6		0.0255715	[0.015-0.036] unit decrease	Illumina [13900000] (imputed)	N
1141	chr13	72965306	72965307	rs17240498	29343252	Hendry LM	2018-01-17	BMC Med Genomics	Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort.	Diastolic blood pressure	1,947 African ancestry individuals	NA	13q21.33	LOC440145, DACH1	rs17240498-C	0.01	5E-6		7.93	unit increase	Illumina [125906]	N
1141	chr13	73000378	73000379	rs1340172	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy (pathologically confirmed)	295 European ancestry cases, 3,864 European ancestry controls	NA	13q21.33	MIR548I4	rs1340172-?	NR	6E-6		5.62	NR	Illumina [4903804] (imputed)	N
1142	chr13	73013053	73013054	rs117076724	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		13q21.33	intergenic	rs117076724-A	0.03	3E-6		1.17	[0.69-1.65] unit increase	Illumina [640625] (imputed)	N
1142	chr13	73064150	73064151	rs61971490	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	13q21.33		rs61971490-T	0.045	8E-6		24.11	[13.77-34.45] unit decrease	Affymetrix [6939676] (imputed)	N
1142	chr13	73065165	73065166	rs17089409	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	13q21.33	NR	rs17089409-?		7E-6				NR [327872]	N
1142	chr13	73065494	73065495	rs17089410	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	13q21.33	NR	rs17089410-?		6E-6				NR [327872]	N
1142	chr13	73102547	73102548	rs17833217	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q21.33		rs17833217-G	0.17199	3E-6		0.042072	[0.024-0.06] unit decrease	Affymetrix [15580782] (imputed)	N
1142	chr13	73104489	73104490	rs17244735	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	13q21.33	NR	rs17244735-G	0.04892	8E-7		0.1177909	NR unit increase	Illumina [560351]	N
1142	chr13	73110301	73110302	rs6562713	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Endozoicomonadaceae abundance in stool	5,959 Finnish ancestry individuals	NA	13q21.33		rs6562713-A	0.0140625	3E-8		0.113798	[0.074-0.154] unit decrease	Illumina [7980478] (imputed)	N
1142	chr13	73131693	73131694	rs17245822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q21.33	NR	rs17245822-C	0.37272799999999995	2E-23		0.0283937	[0.023-0.034] unit increase	Affymetrix [16580851] (imputed)	N
1142	chr13	73131693	73131694	rs17245822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	13q21.33	NR	rs17245822-C	0.373082	4E-8		0.013936	[0.0087-0.0191] unit increase	Affymetrix [16585745] (imputed)	N
1142	chr13	73131693	73131694	rs17245822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q21.33		rs17245822-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1142	chr13	73131693	73131694	rs17245822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q21.33	Intergenic	rs17245822-A	0.632	8E-9	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr13	73131693	73131694	rs17245822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q21.33	Intergenic	rs17245822-A	0.6318	3E-8	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1142	chr13	73132631	73132632	rs6562715	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q21.33		rs6562715-C	0.17	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
1142	chr13	73132631	73132632	rs6562715	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q21.33	NR	rs6562715-C	0.1683	2E-9				NR [9056863] (imputed)	N
1142	chr13	73138148	73138149	rs9599979	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q21.33		rs9599979-C	0.17	9E-12		6.82	z score increase	Affymetrix [9061022] (imputed)	N
1142	chr13	73138148	73138149	rs9599979	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q21.33	NR	rs9599979-C	0.1702	3E-13				NR [9056863] (imputed)	N
1143	chr13	73138861	73138862	rs9805625	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q21.33		rs9805625-T	0.17	1E-16		8.28	z score increase	Affymetrix [9061022] (imputed)	N
1143	chr13	73146649	73146657	rs145470743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q21.33		rs145470743-C	NR	9E-9		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1143	chr13	73146649	73146657	rs145470743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	13q21.33		rs145470743-C	NR	7E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1143	chr13	73172647	73172648	rs9543012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	13q21.33	NR	rs9543012-C	0.352587	3E-10		0.00806298	[0.0054-0.0107] unit increase	Affymetrix [16578495] (imputed)	N
1143	chr13	73203810	73203811	rs9599996	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q21.33	NR	rs9599996-T	0.598724	2E-10		0.0174262	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1144	chr13	73274871	73274872	rs875589	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	13q21.33	intergenic	rs875589-T	0.263	5E-7	(EA, initial)	0.25	[0.15-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1144	chr13	73274871	73274872	rs875589	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	13q21.33	intergenic	rs875589-T	0.263	3E-6		0.131	[0.076-0.186] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1144	chr13	73275606	73275607	rs184739375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q21.33	NR	rs184739375-T	0.996239	2E-28		0.173135	[0.14-0.2] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1144	chr13	73275606	73275607	rs184739375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q21.33	NR	rs184739375-T	0.996158	2E-21		0.15632	[0.12-0.19] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1144	chr13	73275606	73275607	rs184739375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q21.33	RPL21P110	rs184739375-C	0.0042	1E-12		0.203185	[0.15-0.26] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	13q21.33		rs182782800-?	NR	1E-11		0.111703	[0.08-0.143] unit increase	NR [9800000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	13q21.33		rs182782800-?	NR	3E-21		0.143039	[0.11-0.17] unit decrease	NR [9800000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	13q21.33		rs182782800-?	NR	1E-22		0.148814	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	13q21.33		rs182782800-?	NR	7E-26		0.155972	[0.13-0.19] unit decrease	NR [9800000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	13q21.33		rs182782800-?	NR	3E-23		0.150094	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
1144	chr13	73319138	73319139	rs182782800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q21.33	BORA	rs182782800-A	0.00387499999999996	5E-19		0.16867794	[0.13-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1144	chr13	73330941	73330942	rs6562728	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q21.33	NR	rs6562728-A	0.9979	5E-6		0.21967527	[0.13-0.31] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1144	chr13	73339400	73339401	rs191078878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q21.33		rs191078878-A	NR	1E-11		0.1144	[0.081-0.147] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1144	chr13	73350078	73350079	rs4883918	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	13q21.33		rs4883918-?	NR	7E-6		1.08636	[1.05-1.12]	NR [680312]	N
1145	chr13	73434124	73434125	rs144254157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q22.1		rs144254157-A	NR	7E-17		0.1629	[0.12-0.2] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q22.1		rs144254157-A	NR	5E-15		0.1525	[0.11-0.19] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q22.1	PIBF1	rs144254157-A	0.00390900000000005	2E-9		0.11094519	[0.075-0.147] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q22.1	PIBF1	rs144254157-A	0.00391699999999995	5E-12		0.12705871	[0.091-0.163] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q22.1	PIBF1	rs144254157-A	0.00391699999999995	3E-20		0.17229447	[0.14-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q22.1	PIBF1	rs144254157-A	0.00391399999999997	2E-23		0.175862	[0.14-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q22.1	PIBF1	rs144254157-A	0.00391699999999995	2E-20		0.17124623	[0.14-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs144254157-G	0.996299	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q22.1	NR	rs144254157-G	0.996173	8E-13		0.112688	[0.082-0.144] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs144254157-G	0.996301	2E-26				Affymetrix, Illumina [24246363] (imputed)	N
1145	chr13	73434124	73434125	rs144254157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs144254157-G	0.996201	8E-21				Affymetrix, Illumina [20825802] (imputed)	N
1145	chr13	73444484	73444485	rs117084279	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	13q22.1		rs117084279-?	NR	9E-9		1.37	[0.91-1.83] unit decrease	NR [599248] (imputed)	N
1146	chr13	73554145	73554146	rs189927041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q22.1	PIBF1	rs189927041-A	0.9937	6E-6		0.236	[0.13-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1146	chr13	73554145	73554146	rs189927041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q22.1	PIBF1	rs189927041-A	0.9937	6E-6		0.236	[0.13-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1146	chr13	73559981	73559982	rs8002688	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	13q22.1	PIBF1	rs8002688-T	0.04	2E-9	(SBP, response to intervention)	2.04	[1.37-2.71] mmHg increase	Affymetrix [2216774] (imputed)	N
1146	chr13	73567190	73567191	rs561619482	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q22.1	PIBF1	rs561619482-A	0.0045	6E-11		0.1817326	[0.13-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1146	chr13	73568510	73568511	rs76499759	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	13q22.1	PIBF1	rs76499759-A	0.18	3E-8		1.27	[1.17-1.38]	Illumina [7206774] (imputed)	N
1146	chr13	73608707	73608708	rs9600062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q22.1		rs9600062-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1146	chr13	73619287	73619288	rs12431227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q22.1		rs12431227-T	NR	5E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1146	chr13	73624533	73624534	rs12584892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.1		rs12584892-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1146	chr13	73626551	73626552	rs7318746	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q22.1	NR	rs7318746-T	0.299111	1E-8		0.0194671	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1146	chr13	73627274	73627275	rs9573092	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	13q22.1	PIBF1, KLF5	rs9573092-A	0.7	3E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1146	chr13	73627675	73627676	rs7989041	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	13q22.1	NR	rs7989041-T	0.6506	2E-12		1.0449321	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1146	chr13	73627675	73627676	rs7989041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q22.1		rs7989041-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1146	chr13	73628707	73628708	rs9530141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q22.1		rs9530141-G	NR	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1146	chr13	73630058	73630059	rs11841945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q22.1	KLF5	rs11841945-C	0.57892	1E-9		0.013719325	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1146	chr13	73630058	73630059	rs11841945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q22.1	KLF5	rs11841945-C	0.578902	3E-9		0.013367451	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1146	chr13	73634050	73634051	rs73220641	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	13q22.1	NR	rs73220641-C	NR	5E-9		0.12	unit decrease	Illumina [NR]	N
1146	chr13	73634858	73634859	rs41286076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q22.1		rs41286076-T	NR	6E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1146	chr13	73634858	73634859	rs41286076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q22.1	KLF5	rs41286076-T	0.255666	2E-9		0.01518803	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1146	chr13	73634858	73634859	rs41286076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs41286076-T	0.234864	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1146	chr13	73634858	73634859	rs41286076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q22.1	NR	rs41286076-T	0.255123	2E-11		0.014473	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1146	chr13	73638477	73638478	rs9543219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q22.1	NR	rs9543219-T	0.574059	5E-11		0.012822	[0.009-0.0166] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1146	chr13	73639370	73639371	rs9530143	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	13q22.1	KLF5	rs9530143-A	NR	3E-7		0.0392	unit decrease	Illumina [15409056] (imputed)	N
1146	chr13	73639370	73639371	rs9530143	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	13q22.1	KLF5	rs9530143-G	0.68	8E-6				Affymetrix, Illumina [8002429] (imputed)	N
1146	chr13	73639370	73639371	rs9530143	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	13q22.1	KLF5	rs9530143-G	0.682	2E-8		0.077	[0.05-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1146	chr13	73644892	73644893	rs17285550	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	13q22.1	KLF5	rs17285550-A	NR	3E-12		0.181	[0.13-0.23] unit decrease	Affymetrix [7701190] (imputed)	N
1146	chr13	73647029	73647030	rs56049626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q22.1		rs56049626-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1146	chr13	73649151	73649152	rs45597035	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	13q22.1	NR	rs45597035-A	0.64	2E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1146	chr13	73649151	73649152	rs45597035	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q22.1	KLF5	rs45597035-G	0.35309999999999997	2E-8		1.0224482		Affymetrix [11880941] (imputed)	N
1146	chr13	73649151	73649152	rs45597035	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	13q22.1	KLF5	rs45597035-A	0.6506	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1147	chr13	73690620	73690621	rs7319964	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	13q22.1	KLF5	rs7319964-T	0.539	7E-12		0.006	[0.004-0.008] unit decrease	NR [57525634] (imputed)	N
1147	chr13	73699402	73699403	rs79879780	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	13q22.1		rs79879780-?	NR	2E-6		1.0	[0.59-1.41] unit decrease	NR [599248] (imputed)	N
1147	chr13	73704118	73704119	rs2990870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q22.1		rs2990870-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1147	chr13	73713446	73713447	rs7327286	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	13q22.1	KLF5	rs7327286-A	0.7192	7E-11		0.0052	[0.0036-0.0068] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1147	chr13	73715340	73715341	rs943559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q22.1	NR	rs943559-C	NR	2E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1147	chr13	73716316	73716317	rs1108921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q22.1		rs1108921-G	NR	2E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1147	chr13	73716823	73716824	rs7489384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	13q22.1		rs7489384-G	NR	5E-16		0.1211	[0.092-0.15] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1147	chr13	73716860	73716861	rs7489409	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	13q22.1	NR	rs7489409-C	NR	4E-24		1.086	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1147	chr13	73716860	73716861	rs7489409	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	13q22.1	NR	rs7489409-C	0.401	9E-14		1.144	[1.10-1.19]	Affymetrix, Illumina [10186136] (imputed)	N
1147	chr13	73717800	73717800	rs147707062	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	13q22.1	NR	rs147707062-CCTT	0.73	7E-6		0.82	[NR]	Affymetrix [87696888] (imputed)	N
1147	chr13	73719776	73719777	rs9543236	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	13q22.1		rs9543236-?	NR	5E-6		1.10364	[1.06-1.15]	NR [680312]	N
1147	chr13	73721598	73721599	rs61967422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.1		rs61967422-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1147	chr13	73725350	73725350	rs397704695	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	13q22.1		rs397704695-TAC	0.36682217	2E-14		1.1787953	[1.129993313-1.229704938]	Illumina [8919992] (imputed)	N
1147	chr13	73728138	73728139	rs9600079	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	13q22.1	KLF5	rs9600079-T	0.386	7E-8		1.1428571	NR	Illumina [7742602] (imputed)	N
1147	chr13	73728138	73728139	rs9600079	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	13q22.1	KLF5	rs9600079-T	NR	1E-6		1.1904762	[NR]	Illumina [4550396] (imputed)	N
1147	chr13	73728138	73728139	rs9600079	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	13q22.1	intergenic	rs9600079-T	0.38	3E-9		1.18	[1.12-1.24]	Illumina [510687]	N
1147	chr13	73741148	73741149	rs11838472	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q22.1	intergenic	rs11838472-?	0.031	3E-17			[NR]	Affymetrix, Illumina [152234]	N
1147	chr13	73741376	73741377	rs61390061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	13q22.1		rs61390061-T	0.039227128	4E-13		0.439876	[0.32-0.56] unit increase	Illumina [13406905] (imputed)	N
1147	chr13	73764624	73764625	rs138128600	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	13q22.1	KLF5, KLF12	rs138128600-?	NR	2E-7		0.53	[0.33-0.73] unit increase	Illumina [1075436] (imputed)	N
1147	chr13	73775554	73775555	rs11842910	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.1	NR	rs11842910-T	0.02091	1E-8	(MYO1B)	0.1135	NR unit increase	Illumina [1671387] (imputed)	N
1147	chr13	73791553	73791554	rs78341008	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	13q22.1	NR	rs78341008-C	0.0692	3E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [16900397] (imputed)	N
1148	chr13	73806981	73806982	rs12870942	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q22.1	NR	rs12870942-C	0.3182	4E-9	(EA)	0.0391	[0.026-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
1148	chr13	73806981	73806982	rs12870942	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	13q22.1	KLF5, KLF12	rs12870942-?	0.32	3E-7		1.09	[1.05-1.13]	Illumina [10909381] (imputed)	N
1148	chr13	73806981	73806982	rs12870942	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	13q22.1	KLF12, KLF5	rs12870942-?	0.3	4E-8		1.06	[1.01-1.10] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1148	chr13	73811790	73811791	rs12428857	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	13q22.1	RNY1P8	rs12428857-T	0.0495341	2E-9		0.108705014	[0.073-0.144] unit increase	Affymetrix [7288503] (imputed)	N
1148	chr13	73811878	73811879	rs9600103	27008869	Chen MM	2016-03-23	Hum Mol Genet	GWAS meta-analysis of 16 852 women identifies new susceptibility locus for endometrial cancer.	Endometrial cancer	4,907 European ancestry cases, 11,945 European ancestry controls	NA	13q22.1	KLF5	rs9600103-?	0.722	4E-12		1.23	[NR]	Illumina [9486271] (imputed)	N
1148	chr13	73812140	73812141	rs7981863	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	13q22.1	KLF5, KLF12	rs7981863-C	0.715876	5E-15		1.17	[1.13-1.22]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1148	chr13	73812140	73812141	rs7981863	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	13q22.1	KLF5, KLF12	rs7981863-C	0.72	3E-17		1.16	[1.12-1.20]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1148	chr13	73812531	73812532	rs149617015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	13q22.1		rs149617015-T	NR	3E-9		0.1082	[0.073-0.144] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1148	chr13	73814890	73814891	rs11841589	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	13q22.1	KLF12	rs11841589-G	0.74	6E-10		1.16	[1.10-1.21]	Illumina [up to 2300000] (imputed)	N
1148	chr13	73814890	73814891	rs11841589	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	13q22.1	KLF12	rs11841589-G	0.74	5E-11		1.15	[1.11-1.21]	Illumina [up to 2300000] (imputed)	N
1148	chr13	73824423	73824424	rs8002127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q22.1		rs8002127-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1148	chr13	73825918	73825919	rs79944483	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q22.1	intergenic	rs79944483-G	0.9583	2E-10		0.5679	[0.39-0.74] mmHg decrease	Affymetrix [NR] (imputed)	N
1148	chr13	73826900	73826901	rs78474310	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q22.1	KLF5	rs78474310-A	0.9564	8E-16		0.4828	[0.37-0.6] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1148	chr13	73847474	73847475	rs77792117	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	13q22.1	Intergenic	rs77792117-AT	0.1336	6E-6		0.7129	[0.4-1.02] unit decrease	Illumina [9520174] (imputed)	N
1148	chr13	73859957	73859958	rs9543310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.1		rs9543310-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1148	chr13	73887110	73887111	rs4885090	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.1	NR	rs4885090-T	0.1359	3E-8	(GCLM)	0.002605	NR unit decrease	Illumina [1671387] (imputed)	N
1148	chr13	73908845	73908846	rs9573163	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	13q22.1	NR	rs9573163-G	0.43	5E-13		1.26	[1.18-1.34]	Affymetrix [666141]	N
1148	chr13	73916627	73916628	rs9543325	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	13q22.1		rs9543325-?	NR	1E-6		1.28731	[1.19-1.39]	NR [663102]	N
1148	chr13	73916627	73916628	rs9543325	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	13q22.1	KLF5, KLF12	rs9543325-C	0.37	1E-22	(EA)	1.24	[1.19-1.28]	Illumina [11381182] (imputed)	N
1148	chr13	73916627	73916628	rs9543325	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	13q22.1	KLF5, KLF12	rs9543325-?	NR	2E-10		1.24	[1.16-1.32]	Illumina [866891] (imputed)	N
1148	chr13	73916627	73916628	rs9543325	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	13q22.1	KLF12, KLF5	rs9543325-?	NR	4E-14		1.23	[1.18-1.30]	Illumina [608202]	N
1148	chr13	73916627	73916628	rs9543325	20101243	Petersen GM	2010-01-24	Nat Genet	A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.	Pancreatic cancer	3,851 European, Chinese and other ancestry cases, 3,934 European, Chinese and other ancestry controls	NA	13q22.1	KLF12, KLF5	rs9543325-C	0.37	3E-11		1.26	[1.18-1.35]	Illumina [551766]	N
1148	chr13	73920463	73920464	rs9530186	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	13q22.1	NR	rs9530186-C	0.2416	6E-8		0.1912	[0.12-0.26] unit decrease	Illumina [10677593] (imputed)	N
1149	chr13	73932113	73932114	rs1886449	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q22.1	LOC730242	rs1886449-A	0.38	9E-6	(recessive)	1.51	[1.26-1.80]	Illumina [420236]	N
1149	chr13	73957680	73957681	rs6562760	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	13q22.1		rs6562760-A	NR	1E-9		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1149	chr13	73957680	73957681	rs6562760	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q22.1	intergenic	rs6562760-G	0.76	2E-9	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1149	chr13	73957680	73957681	rs6562760	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	13q22.1	KLF5	rs6562760-G	0.76	9E-10		1.0869565	[1.05-1.11]	Illumina [~ 11500000] (imputed)	N
1149	chr13	73957680	73957681	rs6562760	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	13q22.1	KLF5	rs6562760-G	0.76	4E-7		1.1235955	[1.08-1.16]	Illumina [~ 11500000] (imputed)	N
1149	chr13	73957680	73957681	rs6562760	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	13q22.1	KLF5, KLF12	rs6562760-?	0.8	5E-10		1.1235955	[1.06-1.18] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1149	chr13	73986627	73986628	rs1886450	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	13q22.1	KLF5, KLF12	rs1886450-G	0.593	6E-12		1.09	[1.07-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1149	chr13	73991461	73991462	rs7316968	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	13q22.1		rs7316968-?	NR	5E-8	(Colorectal polyp)	1.07	[1.04-1.1]	Illumina [NR] (imputed)	N
1149	chr13	73991461	73991462	rs7316968	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	13q22.1		rs7316968-?	NR	3E-8	(Colorectal cancer)	1.1	[1.06-1.14]	Illumina [NR] (imputed)	N
1149	chr13	73995193	73995194	rs61957178	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	13q22.1	KLF12	rs61957178-T	0.165339	3E-10		1.0521557	[1.03562224020029-1.06895330034983]	NR [9572556] (imputed)	N
1149	chr13	73995193	73995194	rs61957178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	13q22.1		rs61957178-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1149	chr13	73995876	73995877	rs7336001	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	13q22.1	NR	rs7336001-G	0.907376215	2E-6		1.1640729	[1.09-1.24]	Affymetrix, Illumina [20400945] (imputed)	N
1149	chr13	73995876	73995877	rs7336001	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	13q22.1	NR	rs7336001-G	NR	2E-10		1.099	[1.07-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
1149	chr13	73997960	73997961	rs1924816	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	13q22.1	KLF5	rs1924816-A	0.7737	6E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1149	chr13	74004375	74004376	rs9573194	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	13q22.1	KLF12	rs9573194-T	0.82	3E-6	(Right HG area)	2.52	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1149	chr13	74039056	74039057	rs17090215	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	13q22.1	KLF12	rs17090215-?	NR	3E-6		3.9	2.20-6.92	Illumina [~ 18000000] (imputed)	N
1149	chr13	74039934	74039935	rs981625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	13q22.1		rs981625-G	NR	1E-8		0.1068	[0.07-0.144] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1149	chr13	74039934	74039935	rs981625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	13q22.1		rs981625-G	NR	4E-8		0.0842	[0.054-0.114] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1149	chr13	74039934	74039935	rs981625	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	13q22.1	KLF5, KLF12	rs981625-G	0.0649499782088134	4E-8		0.07247254	[0.047-0.098] unit increase	Affymetrix [35186738] (imputed)	N
1149	chr13	74039934	74039935	rs981625	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	13q22.1	KLF12	rs981625-G	0.06	2E-9				NR [> 9500000] (imputed)	N
1149	chr13	74039934	74039935	rs981625	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	13q22.1	NR	rs981625-G	0.06511	9E-13		1.088	[1.064-1.113]	Affymetrix [15688218] (imputed)	N
1149	chr13	74039934	74039935	rs981625	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	13q22.1	LINC00393	rs981625-G	0.06511	2E-8				Affymetrix [15688218] (imputed)	N
1149	chr13	74039934	74039935	rs981625	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	13q22.1	NR	rs981625-G	0.06511	3E-14		1.086	[1.064-1.109]	Affymetrix [15688218] (imputed)	N
1149	chr13	74039934	74039935	rs981625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q22.1		rs981625-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1150	chr13	74066625	74066626	rs9573227	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q22.1		rs9573227-T	0.05	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
1150	chr13	74083354	74083355	rs117619390	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	13q22.1	NR	rs117619390-A	0.977789	2E-6		0.293	[0.17-0.41] unit decrease	NR [9260588] (imputed)	N
1150	chr13	74084683	74084684	rs61957204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q22.1	NR	rs61957204-A	NR	4E-11		0.0295	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1150	chr13	74090414	74090415	rs9600128	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	13q22.1	KLF12	rs9600128-A	0.63	3E-6		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
1150	chr13	74105188	74105189	rs9600129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	13q22.1	KLF5, LINC00392	rs9600129-?	NR	2E-9		0.0354	[0.024-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1150	chr13	74106130	74106131	rs7318906	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	13q22.1		rs7318906-A	0.4708	3E-13		0.041	unit decrease	Illumina [28300000] (imputed)	N
1150	chr13	74106938	74106939	rs9318186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q22.1		rs9318186-G	NR	3E-11		0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1150	chr13	74108586	74108587	rs1028883	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	13q22.1	KLF12	rs1028883-?	0.43	7E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
1150	chr13	74116109	74116110	rs34527101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q22.1		rs34527101-C	NR	1E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1150	chr13	74124675	74124676	rs12876036	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	13q22.1	KLF5, KLF12	rs12876036-G	0.56	1E-10		6.46	z-score increase	Affymetrix [4314223] (imputed)	N
1150	chr13	74125797	74125798	rs1887646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q22.1	NR	rs1887646-A	NR	5E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1150	chr13	74125797	74125798	rs1887646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	13q22.1	NR	rs1887646-A	NR	6E-10		0.0148	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1150	chr13	74126152	74126153	rs7326020	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Motor composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	13q22.1	NR	rs7326020-?	NR	4E-6		1.64	[0.94-2.34] unit increase	Illumina [552487]	N
1150	chr13	74157450	74157451	rs17090300	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	13q22.1	KLF12, TCONS_00021669, TCONS_00021670, TCONS_I2_00006907, TCONS_I2_00007425	rs17090300-G	0.05	1E-11	(left-side-affected)	2.31	[1.81-2.93]	Illumina [792342]	N
1151	chr13	74188013	74188014	rs9600143	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q22.1	KLF12	rs9600143-A	0.457046	6E-10		0.0125791	[0.0086-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1151	chr13	74189973	74189974	rs7328187	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q22.1	LINC00393	rs7328187-T	0.5024	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix [18391927] (imputed)	N
1151	chr13	74246426	74246427	rs11619505	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q22.1	NR	rs11619505-C	0.429359	6E-9		0.0182418	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
1151	chr13	74274846	74274847	rs7984233	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	13q22.1	NR	rs7984233-?	NR	5E-6		0.0782	[0.045-0.112] unit increase	Illumina [1224134] (imputed)	N
1151	chr13	74278964	74278965	rs7333671	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	13q22.1	KLF12	rs7333671-G	0.08	2E-6		1.22	[1.11-1.34]	Illumina [~ 2100000] (imputed)	N
1151	chr13	74295766	74295767	rs149473200	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	13q22.1	KLF12	rs149473200-?	NR	1E-6		7.06	3.19-15.63	Illumina [~ 18000000] (imputed)	N
1151	chr13	74298865	74298866	rs2025424	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q22.1	NR	rs2025424-?	NR	1E-13				Affymetrix [NR]	N
1151	chr13	74299404	74299405	rs151071053	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	13q22.1	KLF12	rs151071053-?	NR	1E-6		7.06	3.19-15.63	Illumina [~ 18000000] (imputed)	N
1152	chr13	74325498	74325499	rs12877581	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q22.1	NR	rs12877581-C	NR	4E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1152	chr13	74337217	74337218	rs9318213	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	13q22.1	KLF12	rs9318213-?	NR	3E-8		1.059	[1.038-1.081]	Illumina [13729857] (imputed)	N
1152	chr13	74350127	74350128	rs7339277	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	13q22.1		rs7339277-?	NR	1E-7		0.76	[0.48-1.04] unit decrease	NR [599248] (imputed)	N
1152	chr13	74360339	74360340	rs117059932	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q22.1	NR	rs117059932-?	NR	3E-6		0.0078417	[0.0045-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1152	chr13	74400572	74400573	rs61957289	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	13q22.1	KLF12	rs61957289-C	0.99	2E-7		46.0	[29-63] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
1152	chr13	74400572	74400573	rs61957289	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	13q22.1	KLF12	rs61957289-C	0.99	1E-8	(Women)	53.0	[35-72] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
1152	chr13	74417767	74417768	rs74717172	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KLF12	rs74717172-?	NR	3E-11		1.40587	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1152	chr13	74417767	74417768	rs74717172	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KLF12	rs74717172-?	NR	2E-8	(male)	2.05412	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1152	chr13	74433806	74433807	rs4883955	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	13q22.1	KLF12	rs4883955-?	0.72	3E-6	(EA)	2.0	[NR]	Illumina [1795103]	N
1153	chr13	74461870	74461870	rs58598658	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	13q22.1	intergenic	rs58598658-C	0.446	1E-6	(AA)	0.465	unit increase	Illumina [at least 5086170] (imputed)	N
1153	chr13	74480707	74480708	rs146264611	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	13q22.1	NR	rs146264611-?	NR	6E-6		12.864	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1153	chr13	74509345	74509346	rs7992314	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	13q22.1	KLF12	rs7992314-G	0.631	3E-8		0.035	[0.023-0.047] unit decrease	NR [~ 9000000] (imputed)	N
1153	chr13	74509345	74509346	rs7992314	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	13q22.1	KLF12	rs7992314-G	0.631	6E-8		0.027	[0.017-0.037] unit decrease	NR [~ 9000000] (imputed)	N
1153	chr13	74511053	74511054	rs4883958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q22.1	NR	rs4883958-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1153	chr13	74511990	74511991	rs17061696	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	13q22.1	KLF12	rs17061696-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1153	chr13	74511990	74511991	rs17061696	32429735	Lahrouchi N	2020-05-20	Circulation	Transethnic Genome-Wide Association Study Provides Insights in the Genetic Architecture and Heritability of Long QT Syndrome.	Long QT syndrome	1,238 European ancestry cases, 8,219 European ancestry controls, 418 Japanese cases, 1,617 Japanese controls	NA	13q22.1	KLF12	rs17061696-?		4E-8		1.25	[1.15-1.35]	Illumina [NR] (imputed)	N
1153	chr13	74513121	74513122	rs728926	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	13q22.1	KLF12	rs728926-T	0.375	6E-10		0.581	[0.4-0.77] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1153	chr13	74513121	74513122	rs728926	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	13q22.1	KLF12	rs728926-?	NR	6E-11	(EA)	0.4	[0.28-0.52] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1153	chr13	74513121	74513122	rs728926	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	13q22.1	KLF12	rs728926-T	0.362	2E-8		0.57	[0.37-0.77] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1153	chr13	74518209	74518210	rs9573330	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	13q22.1	KLF12	rs9573330-A	0.37	5E-8	(European)	0.4	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1153	chr13	74518209	74518210	rs9573330	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	13q22.1	KLF12	rs9573330-A		4E-10		0.4	[0.28-0.52] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	13q22.1		rs1886512-T	0.63	4E-6		0.028	[0.016-0.04] unit decrease	Affymetrix [NR]	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	9E-9	(134 ms)	0.0320665	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	9E-36	(246 ms)	0.0713043	[0.06-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	9E-35	(248 ms)	0.0701376	[0.059-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	9E-22	(178 ms)	0.0531022	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	8E-40	(234 ms)	0.0760901	[0.065-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	8E-39	(242 ms)	0.0743822	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	8E-13	(276 ms)	0.0416536	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	8E-11	(280 ms)	0.037837	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-9	(-100 ms)	0.0325229	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-40	(230 ms)	0.0751504	[0.064-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-37	(216 ms)	0.0721109	[0.061-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-35	(204 ms)	0.0694758	[0.058-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-20	(268 ms)	0.0522906	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	7E-16	(160 ms)	0.0445108	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-9	(-94 ms)	0.032309	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-9	(-106 ms)	0.032367	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-39	(238 ms)	0.0744761	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-37	(244 ms)	0.0729328	[0.062-0.084] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-37	(212 ms)	0.0722043	[0.061-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	6E-12	(278 ms)	0.0400397	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	5E-40	(224 ms)	0.0749567	[0.064-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	5E-27	(186 ms)	0.0598813	[0.049-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	5E-17	(166 ms)	0.0468566	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	5E-11	(144 ms)	0.0367438	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-8	(284 ms)	0.0320498	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-32	(254 ms)	0.0674851	[0.056-0.079] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-32	(200 ms)	0.0661904	[0.055-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-25	(260 ms)	0.0593587	[0.048-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-18	(270 ms)	0.0504848	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-14	(274 ms)	0.044025	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	4E-10	(138 ms)	0.0342093	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-9	(282 ms)	0.0346367	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-9	(-104 ms)	0.0322778	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-8	(-90 ms)	0.0310174	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-39	(220 ms)	0.0745014	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-38	(222 ms)	0.0744974	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-38	(218 ms)	0.073295	[0.062-0.085] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-37	(210 ms)	0.0722722	[0.061-0.084] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-35	(202 ms)	0.0691285	[0.058-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-33	(252 ms)	0.068637	[0.057-0.08] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-23	(264 ms)	0.0568203	[0.045-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-19	(168 ms)	0.0499265	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-16	(272 ms)	0.0475392	[0.036-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-16	(164 ms)	0.0459229	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-16	(158 ms)	0.0460715	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	3E-10	(136 ms)	0.0342208	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-9	(-98 ms)	0.0331802	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-41	(228 ms)	0.0764037	[0.065-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-40	(236 ms)	0.0757603	[0.064-0.087] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-36	(214 ms)	0.0717013	[0.06-0.083] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-34	(250 ms)	0.0695665	[0.058-0.081] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-30	(256 ms)	0.0655986	[0.054-0.077] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-27	(258 ms)	0.0622386	[0.051-0.074] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	2E-13	(154 ms)	0.0413256	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-9	(-96 ms)	0.0336352	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-8	(-88 ms)	0.0322722	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-8	(-108 ms)	0.0318005	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-41	(226 ms)	0.0763708	[0.065-0.088] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-39	(232 ms)	0.0750594	[0.064-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-38	(240 ms)	0.0742953	[0.063-0.086] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-35	(208 ms)	0.0710949	[0.06-0.082] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-24	(262 ms)	0.0585648	[0.047-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-20	(266 ms)	0.0541504	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q22.1	KLF12	rs1886512-T	0.62766	1E-15	(156 ms)	0.0450419	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	13q22.1	NR	rs1886512-?	NR	3E-6		0.4413941	[0.26-0.63] unit decrease	Illumina [26566045] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	13q22.1	KLF12	rs1886512-A	0.356152	5E-26		0.374996	[0.31-0.44] ms decrease	Illumina [162199]	N
1153	chr13	74520185	74520186	rs1886512	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	13q22.1	KLF12	rs1886512-A	0.369388949495636	2E-14		0.39505228	[0.29-0.5] ms decrease	Illumina [213295]	N
1153	chr13	74520185	74520186	rs1886512	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	13q22.1	NR	rs1886512-?	NR	6E-10	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1153	chr13	74520185	74520186	rs1886512	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	13q22.1	KLF12	rs1886512-A	0.37	1E-8		0.4	[0.26-0.54] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1153	chr13	74549100	74549101	rs4454843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.1		rs4454843-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1153	chr13	74553462	74553463	rs13378861	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q22.1	NR	rs13378861-C		4E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
1153	chr13	74556101	74556102	rs74095939	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q22.1		rs74095939-?	NR	6E-8		1.1717178	[1.10651757512896-1.24075991041499]	Illumina [up to 7827597] (imputed)	N
1153	chr13	74556224	74556225	rs7339349	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	13q22.1	KLF12	rs7339349-T	0.106	8E-6	(Ordinal II)	0.3467	[0.19-0.5] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1153	chr13	74561705	74561706	rs7329599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q22.1		rs7329599-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1153	chr13	74567710	74567711	rs76617118	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	13q22.1	Intergenic	rs76617118-A		8E-6		0.111	[0.063-0.160] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1154	chr13	74599873	74599874	rs7324708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q22.1	KLF12	rs7324708-A	0.227094	4E-11		0.017672984	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr13	74628681	74628682	rs10507824	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q22.1	Intergenic	rs10507824-?	NR	4E-6		2.265	[NR]	Affymetrix [492217] (imputed)	N
1154	chr13	74631239	74631240	rs75012440	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q22.1	KLF12	rs75012440-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1154	chr13	74631239	74631240	rs75012440	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	13q22.1	NR	rs75012440-A	0.077808	5E-6		0.1466377	[0.08-0.21] unit increase	Illumina [9469131] (imputed)	N
1154	chr13	74635587	74635588	rs1324913	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	13q22.1	KLF12	rs1324913-G	0.65	3E-10		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1154	chr13	74674870	74674871	rs4885150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	13q22.1	KLF12	rs4885150-C	0.7258	4E-16		0.03291409	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr13	74677445	74677446	rs9530279	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q22.1	KLF12	rs9530279-T	0.734291	2E-18		0.0184783	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
1154	chr13	74679160	74679161	rs9530281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q22.1	KLF12	rs9530281-A	0.715713	4E-19		0.02194844	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr13	74681259	74681260	rs9565076	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	13q22.1		rs9565076-T	0.282	2E-24				Affymetrix [10369434] (imputed)	N
1154	chr13	74682891	74682892	rs7327960	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q22.1		rs7327960-T	0.174	4E-16				Affymetrix [10369434] (imputed)	N
1154	chr13	74682891	74682892	rs7327960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q22.1	KLF12	rs7327960-C	0.826235	3E-9		0.01745135	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr13	74682891	74682892	rs7327960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q22.1	NR	rs7327960-C	0.826621	2E-11		0.017659	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1154	chr13	74686327	74686341	rs773210894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q22.1		rs773210894-?	NR	6E-20		0.021103	[0.016-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1154	chr13	74686341	74686341	rs10637379	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q22.1		rs10637379-?	NR	2E-17		0.0191933	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1154	chr13	74686341	74686341	rs10637379	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q22.1	KLF12	rs10637379-C	0.282382	1E-7	(women)	0.0274873	[0.017-0.038] unit decrease	NR [17166351] (imputed)	N
1154	chr13	74686341	74686341	rs10637379	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q22.1	KLF12	rs10637379-C	0.282212	4E-9		0.0230601	[0.016-0.031] unit decrease	NR [17166351] (imputed)	N
1154	chr13	74688720	74688721	rs7995760	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q22.1	NR	rs7995760-?	NR	4E-7				Affymetrix [NR]	N
1154	chr13	74693400	74693401	rs9600233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q22.1		rs9600233-A	NR	1E-13		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1154	chr13	74693400	74693401	rs9600233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q22.1	KLF12	rs9600233-A	0.159415	4E-18		0.02635975	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr13	74693400	74693401	rs9600233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q22.1		rs9600233-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1154	chr13	74697855	74697856	rs4885151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q22.1	KLF12	rs4885151-G	0.715665	6E-38		0.031632476	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	13q22.1		rs3812849-A	0.736	2E-36				Affymetrix [10369434] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q22.1	KLF12	rs3812849-C	0.264449	8E-17		0.020929348	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs3812849-C	0.247233	2E-19				Affymetrix, Illumina [24649327] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q22.1	NR	rs3812849-C	0.266532	6E-21		0.01961	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs3812849-C	0.257417	2E-91				Affymetrix, Illumina [23472807] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q22.1	NR	rs3812849-C	0.266158	1E-91		0.04349	[0.039-0.048] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1154	chr13	74701735	74701736	rs3812849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q22.1		rs3812849-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1154	chr13	74702104	74702105	rs7335976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q22.1		rs7335976-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1154	chr13	74702540	74702541	rs66504755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q22.1	KLF12	rs66504755-C	0.732888	9E-14		0.02598406	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr13	74702540	74702541	rs66504755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	13q22.1	KLF12	rs66504755-C	0.7338	7E-25		0.04216536	[0.034-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr13	74704286	74704287	rs9600235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	13q22.1	KLF12	rs9600235-T	0.1521	6E-9		0.02894421	[0.019-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr13	74705178	74705179	rs7995668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q22.1		rs7995668-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1154	chr13	74705198	74705199	rs9600236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q22.1	NR	rs9600236-T	0.152108	4E-12		0.018002	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1154	chr13	74705250	74705251	rs9600237	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs9600237-T	0.132665	3E-10				Affymetrix, Illumina [24332387] (imputed)	N
1154	chr13	74706950	74706951	rs112679104	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q22.1	NR	rs112679104-C	0.981785	6E-10		0.0475502	[0.032-0.063] unit increase	Affymetrix [15000001]	N
1154	chr13	74707429	74707430	rs77919370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q22.1		rs77919370-A	NR	5E-52		0.0477	[0.042-0.054] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1154	chr13	74707429	74707430	rs77919370	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	13q22.1		rs77919370-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1154	chr13	74707429	74707430	rs77919370	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q22.1		rs77919370-G	0.85	1E-17				Affymetrix [10369434] (imputed)	N
1154	chr13	74707429	74707430	rs77919370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q22.1	KLF12	rs77919370-A	0.150369	4E-13		0.031065602	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr13	74708695	74708696	rs9543534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q22.1	KLF12	rs9543534-T	0.730891	5E-14		0.019350335	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr13	74708695	74708696	rs9543534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs9543534-T	0.750368	7E-10				Affymetrix, Illumina [24588908] (imputed)	N
1154	chr13	74708695	74708696	rs9543534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q22.1	NR	rs9543534-T	0.729059	2E-10		0.013416	[0.0093-0.0175] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1154	chr13	74708695	74708696	rs9543534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.1	NR	rs9543534-C	0.286885	2E-15				Affymetrix, Illumina [17210439] (imputed)	N
1154	chr13	74708695	74708696	rs9543534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q22.1	NR	rs9543534-C	0.26981	1E-18		0.019335	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1155	chr13	74717307	74717308	rs35185444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q22.1	Intergenic	rs35185444-T	0.8602	7E-9	(MTAG)	0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1155	chr13	74717307	74717308	rs35185444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q22.1	Intergenic	rs35185444-T	0.8602	7E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1155	chr13	74730391	74730392	rs8000245	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	13q22.1	LOC730245	rs8000245-C	NR	8E-6		0.212	[0.090-0.334] unit increase	Illumina [~ 2740000] (imputed)	N
1155	chr13	74735829	74735830	rs1856066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q22.1	NR	rs1856066-T	NR	4E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr13	74735829	74735830	rs1856066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q22.1	NR	rs1856066-T	NR	4E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr13	74737624	74737625	rs9565082	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q22.1	KLF12	rs9565082-C	0.469188	8E-27		0.00246688	[0.002-0.0029] unit decrease	Affymetrix [13995440] (imputed)	N
1155	chr13	74738040	74738040	rs748244464	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q22.1	NR	rs748244464-AAAG	0.337723	4E-8		0.00449883	[0.0027-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
1155	chr13	74738040	74738040	rs748244464	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q22.1	NR	rs748244464-AAAG	0.337723	2E-6		0.00458161	[0.0026-0.0066] unit increase	Affymetrix [16582965] (imputed)	N
1155	chr13	74742321	74742322	rs12429889	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	13q22.1	intergenic	rs12429889-?	0.16	5E-20	(Recessive)	1.64	[1.48-1.81]	Affymetrix [319222]	N
1155	chr13	74767885	74767886	rs9530288	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	13q22.1	KLF12, TBC1D4	rs9530288-A	0.54	6E-13		7.2	z-score increase	Affymetrix [4311822] (imputed)	N
1155	chr13	74810070	74810071	rs67889841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q22.1	NR	rs67889841-A	NR	2E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1155	chr13	74840711	74840712	rs1016447	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q22.1	Intergenic	rs1016447-T	0.19	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr13	74862225	74862225	rs397771807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q22.1		rs397771807-GA	NR	2E-14		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1156	chr13	74865634	74865635	rs9543559	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	13q22.1	NR	rs9543559-G	NR	4E-6		1.1606	NR	Illumina [at least 560000] (imputed)	N
1156	chr13	74868706	74868707	rs118053310	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q22.1	NR	rs118053310-?	NR	9E-9				Illumina [7760689] (imputed)	N
1156	chr13	74872155	74872156	rs17062507	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	13q22.1	NR	rs17062507-?	0.069	3E-6		1.93	[1.46-2.54]	Illumina [5934489] (imputed)	N
1156	chr13	74899632	74899633	rs9600261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q22.1		rs9600261-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1156	chr13	74920185	74920186	rs10492494	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	13q22.1	LINC00347, KLF12	rs10492494-?		5E-7	(M)	22.02	[13.1-30.94] unit decrease	Illumina [693128]	N
1157	chr13	74995659	74995660	rs17714988	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	13q22.1	hCG_1820717	rs17714988-G		3E-7	(AA)			Illumina [NR]	N
1157	chr13	74996636	74996636	rs11454570	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Left-handed vs. non-left-handed)	31,856 British ancestry cases, 299,181 British ancestry controls	NA	13q22.1	LINC00381	rs11454570-?	NR	5E-8				Affymetrix [~ 15000000] (imputed)	N
1157	chr13	74998657	74998658	rs9530313	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	13q22.1	LINC00381	rs9530313-A	0.05122	6E-7		3.041	[2.58-3.5]	Illumina [281811]	N
1157	chr13	75095566	75095567	rs1536407	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	13q22.1	KLF12	rs1536407-A	0.646	4E-6				Affymetrix, Illumina [NR] (imputed)	N
1158	chr13	75128113	75128114	rs17718828	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	13q22.1	KLF12	rs17718828-?	NR	1E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1158	chr13	75147659	75147660	rs117420306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q22.1	Intergenic	rs117420306-T	NR	6E-7		0.0640286	[0.039-0.089] unit increase	Illumina [13520550] (imputed)	N
1158	chr13	75211672	75211673	rs9543733	32047264	Cordova-Palomera A	2020-02-11	Mol Psychiatry	Genetic control of variability in subcortical and intracranial volumes.	Brain imaging measurements (variance)	25,575 European ancestry individuals	NA	13q22.1	LINC00347	rs9543733-?	0.34	7E-8	(thalamus volume variance)			NR [~ 5000000] (imputed)	N
1158	chr13	75216203	75216204	rs4885216	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	13q22.1	intergenic	rs4885216-?	NR	3E-6		1.118451	[1.067431-1.171911]	Illumina [at least 4756722] (imputed)	N
1158	chr13	75216203	75216204	rs4885216	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	13q22.1	intergenic	rs4885216-?	NR	8E-6		1.109866	[1.060398-1.161642]	Illumina [at least 4756722] (imputed)	N
1159	chr13	75292694	75292695	rs9573435	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q22.1	NR	rs9573435-C	0.393	3E-6		0.17238	[0.1-0.245] unit increase	Illumina [~ 6600000] (imputed)	N
1159	chr13	75292694	75292695	rs9573435	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q22.1	NR	rs9573435-C	0.393	5E-6		0.154807	[0.088-0.221] unit increase	Illumina [~ 6600000] (imputed)	N
1159	chr13	75315872	75315873	rs11842690	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	13q22.1	intergenic	rs11842690-G	0.207	1E-6				Illumina [331281]	N
1160	chr13	75487170	75487171	rs550532151	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	13q22.2	NR	rs550532151-C	0.01	3E-7		0.037	[0.023-0.051] unit increase	Affymetrix [NR] (imputed)	N
1162	chr13	75726934	75726935	rs138974444	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q22.2	TBC1D4	rs138974444-G	0.00896408104088356	9E-7	(F_Desulfovibrionaceae_HB)	1.64373	[0.99-2.3] unit decrease	Illumina [7711310] (imputed)	N
1163	chr13	75776267	75776268	rs548097	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	13q22.2	TBC1D4	rs548097-?	0.02	6E-7	(EA)	1.62	[1.00-2.63]	Affymetrix, Illumina [2478304] (imputed)	N
1163	chr13	75792022	75792023	rs75424961	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	13q22.2	NR	rs75424961-?	NR	7E-6		0.6381	[0.37-0.91] unit decrease	Illumina [at least 560000] (imputed)	N
1163	chr13	75795903	75795904	rs9573493	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q22.2	AL162571.1	rs9573493-C	0.5674	2E-6		0.0323	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1163	chr13	75804473	75804474	rs501674	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q22.2	CTAGE11P	rs501674-A	0.6674	8E-6		0.0363	[0.02-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1163	chr13	75864516	75864517	rs529638	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q22.2	COMMD6	rs529638-?	NR	3E-6	(guanosine diphosphate)	0.21586399	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr13	75869161	75869162	rs74096215	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	13q22.2	TBC1D4	rs74096215-C	0.0365	2E-6		2.276	[1.627-3.183]	Affymetrix, Illumina [14074516] (imputed)	N
1163	chr13	75874521	75874522	rs11332300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q22.2	TBC1D4	rs11332300-G	0.569862	2E-9		0.013441772	[0.0091-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr13	75897634	75897635	rs573525	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q22.2	NR	rs573525-T	0.081	6E-6	(IFNalpha_STAT4_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1164	chr13	75898162	75898163	rs7330796	29926116	Grarup N	2018-06-20	Diabetologia	Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.	Type 2 diabetes	317 Greenlandic ancestry cases, 2,631 Greenlandic ancestry controls	NA	13q22.2	TBC1D4	rs7330796-T	0.22	1E-14		4.43		Illumina [115182]	N
1164	chr13	75898162	75898163	rs7330796	25043022	Moltke I	2014-06-18	Nature	A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes.	Two-hour glucose	2,540 Greenlandic ancestry individuals	845 Greenlandic ancestry individuals	13q22.2	TBC1D4	rs7330796-?	NR	4E-17				Illumina [up to 196725]	N
1164	chr13	75903367	75903368	rs8002811	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	13q22.2		rs8002811-T	NR	5E-6		1.311		Illumina [up to 7574753] (imputed)	N
1165	chr13	76055095	76055096	rs9573563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	13q22.2		rs9573563-C	0.136023	2E-14		0.0400097	[0.03-0.05] unit decrease	Illumina [13476266] (imputed)	N
1165	chr13	76055095	76055096	rs9573563	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	13q22.2	TBC1D4	rs9573563-?	NR	4E-10		0.03898	[0.027-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1165	chr13	76055095	76055096	rs9573563	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	13q22.2	TBC1D4	rs9573563-?	NR	4E-8		0.03404	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1165	chr13	76055396	76055397	rs9573565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.2	NR	rs9573565-C	0.738293	1E-19				Affymetrix, Illumina [17210439] (imputed)	N
1165	chr13	76055396	76055397	rs9573565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q22.2	NR	rs9573565-C	0.733465	9E-18		0.018836	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q22.2		rs77685055-A	NR	1E-48		0.038	[0.033-0.043] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	13q22.2		rs77685055-A	0.191601	3E-12		0.0322343	[0.023-0.041] unit decrease	Illumina [13476299] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q22.2		rs77685055-A	NR	7E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q22.2	TBC1D4	rs77685055-A	0.0991919999999999	5E-45		0.05245279	[0.045-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.2	NR	rs77685055-A	0.117016	3E-67				Affymetrix, Illumina [24332387] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	13q22.2	NR	rs77685055-G	0.801256	2E-15		0.036214	[0.027-0.045] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1165	chr13	76055601	76055602	rs77685055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	13q22.2	NR	rs77685055-G	0.806493	2E-10		0.032861	[0.023-0.043] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1165	chr13	76057042	76057043	rs9573566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	13q22.2		rs9573566-C	0.15836	6E-16		0.0345054	[0.026-0.043] unit increase	Illumina [13479135] (imputed)	N
1165	chr13	76057042	76057043	rs9573566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q22.2		rs9573566-C	NR	2E-8		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.2	NR	rs9573567-A	0.105752	2E-88				Affymetrix, Illumina [24246363] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q22.2	NR	rs9573567-A	0.096952	2E-80		0.058784	[0.053-0.065] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q22.2		rs9573567-?	NR	8E-50				NR [~ 8900000] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	13q22.2	TBC1D4, COMMD6	rs9573567-?	NR	9E-9		0.0333	[0.022-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	13q22.2	TBC1D4	rs9573567-A	0.0992	1E-17		0.05118846	[0.039-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr13	76057382	76057383	rs9573567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q22.2	TBC1D4	rs9573567-A	0.0991	6E-22		0.0573649	[0.046-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr13	76058348	76058349	rs60343330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q22.2	NR	rs60343330-T	0.097846	1E-57		0.052535	[0.046-0.059] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1165	chr13	76058348	76058349	rs60343330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q22.2	NR	rs60343330-T	0.097593	3E-10		0.020751	[0.014-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1165	chr13	76058970	76058971	rs9573569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q22.2	TBC1D4	rs9573569-C	0.3058	6E-10		0.02473143	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr13	76059152	76059154	rs146129930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q22.2	TBC1D4	rs146129930-C	0.099008	9E-40		0.05074327	[0.043-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr13	76059852	76059853	rs75240282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q22.2	TBC1D4	rs75240282-G	0.099039	2E-61		0.0621178	[0.055-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr13	76059852	76059853	rs75240282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q22.2	TBC1D4	rs75240282-G	0.0990450000000001	2E-45		0.05368693	[0.046-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr13	76061012	76061013	rs74433716	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q22.2		rs74433716-A	NR	2E-49		0.0461	[0.04-0.052] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1165	chr13	76064658	76064659	rs9565170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	13q22.2	NR	rs9565170-G	0.840781	1E-11		0.03757	[0.027-0.048] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1165	chr13	76064658	76064659	rs9565170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.2	NR	rs9565170-C	0.108285	1E-72				Affymetrix, Illumina [20825802] (imputed)	N
1165	chr13	76064658	76064659	rs9565170	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q22.2	NR	rs9565170-C	0.098299	2E-67		0.05656	[0.05-0.063] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1165	chr13	76064658	76064659	rs9565170	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q22.2	intergenic	rs9565170-C	0.1002	1E-21		0.05687172	[0.045-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr13	76067324	76067324	rs112304816	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q22.2		rs112304816-CATT	0.737175	1E-12		0.018434413	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr13	76068924	76068925	rs4142591	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.2	NR	rs4142591-T	0.107454	7E-11				Affymetrix, Illumina [24558453] (imputed)	N
1165	chr13	76070641	76070642	rs79011584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q22.2		rs79011584-C	NR	1E-55		0.0493	[0.043-0.055] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1165	chr13	76075152	76075153	rs2328945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q22.2		rs2328945-?	NR	5E-61				NR [~ 8900000] (imputed)	N
1165	chr13	76079801	76079802	rs75175706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q22.2		rs75175706-T	0.100762	9E-42		0.05079519	[0.043-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr13	76097290	76097291	rs7319334	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q22.2	COMMD6	rs7319334-A	0.5194	4E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix [18391927] (imputed)	N
1165	chr13	76136647	76136648	rs9543976	23562823	Sheu WH	2013-04-19	Hum Mol Genet	Genome-wide association study in a Chinese population with diabetic retinopathy.	Diabetic retinopathy	437 Chinese ancestry cases, 570 Chinese ancestry controls	329  Hispanic cases, 256 Hispanic controls	13q22.2	TBC1D4, COMMD6, UCHL3	rs9543976-G	0.30	7E-6		1.6	[NR]	Illumina [~ 2166765] (imputed)	N
1166	chr13	76200570	76200571	rs142453120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q22.2	RP11-29G8.3, RP11-173B14.5, LMO7	rs142453120-A	0.249727	1E-10		0.016922224	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr13	76210741	76210742	rs2224797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q22.2		rs2224797-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1166	chr13	76210741	76210742	rs2224797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q22.2		rs2224797-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1166	chr13	76245541	76245542	rs7338461	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	13q22.2	LMO7	rs7338461-?	NR	2E-12		0.0891	[0.064-0.114] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1166	chr13	76249102	76249103	rs11841001	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		13q22.2	NR	rs11841001-A	NR	4E-6		0.208	[0.12-0.30] unit increase	Illumina [~ 2500000] (imputed)	N
1166	chr13	76249274	76249275	rs9530458	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Glaucoma (primary open-angle)	3,071 European ancestry cases, 6,750 European ancestry controls	3,853 cases, 33,480 controls	13q22.2	LMO7	rs9530458-T	NR	3E-9		1.148	[1.11-1.19]	Illumina [NR] (imputed)	N
1166	chr13	76253246	76253247	rs9544020	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q22.2	LMO7	rs9544020-A	0.4994	8E-13		0.098	[0.071-0.125] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1166	chr13	76254432	76254433	rs111439095	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	13q22.2	LMO7	rs111439095-A	NR	5E-6		0.923763	[0.89-0.96]	Illumina [NR] (imputed)	N
1166	chr13	76254432	76254433	rs111439095	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	13q22.2	LMO7	rs111439095-A	NR	3E-8		0.911011	[0.88-0.94]	Illumina [NR] (imputed)	N
1166	chr13	76254432	76254433	rs111439095	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	13q22.2	NR	rs111439095-G		1E-13		0.11	[0.09-0.13] unit increase	NR [NR]	N
1166	chr13	76254707	76254707	rs111870938	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q22.2	LMO7	rs111870938-C	0.5038	2E-13		0.102	[0.074-0.13] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1166	chr13	76257265	76257266	rs9544022	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	13q22.2	LMO7	rs9544022-G	0.498	1E-10		0.081	[0.056-0.106] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1166	chr13	76258719	76258720	rs9544024	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	13q22.2	LMO7	rs9544024-A	NR	3E-16		0.0579	unit decrease	Illumina [15409056] (imputed)	N
1166	chr13	76258719	76258720	rs9544024	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	13q22.2	LMO7	rs9544024-A	0.5	1E-12				Affymetrix, Illumina [8002429] (imputed)	N
1166	chr13	76258719	76258720	rs9544024	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	13q22.2	LMO7	rs9544024-G	0.5	1E-12		1.0752687	NR	Affymetrix, Illumina [8002429] (imputed)	N
1166	chr13	76281807	76281808	rs186102686	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hemorrhoids	9,129 European ancestry cases, 47,508 European ancestry controls	NA	13q22.2		rs186102686-T	0.0037892	2E-8		1.99		Affymetrix [15168441] (imputed)	N
1167	chr13	76326281	76326282	rs539514	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	13q22.2	LMO7	rs539514-?	0.50	6E-11		1.43	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
1167	chr13	76351285	76351286	rs474240	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	13q22.2	LMO7	rs474240-A	0.35445	9E-9				Affymetrix, Illumina [NR] (imputed)	N
1167	chr13	76363720	76363721	rs9318373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.2		rs9318373-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1167	chr13	76395341	76395342	rs76082815	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	13q22.2	LMO7	rs76082815-?	NR	6E-9	(African)			Illumina [4404269] (imputed)	N
1167	chr13	76395341	76395342	rs76082815	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	13q22.2	LMO7	rs76082815-?	NR	4E-8				Illumina [4404269] (imputed)	N
1167	chr13	76395341	76395342	rs76082815	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	13q22.2	LMO7	rs76082815-T	0.003125	7E-8	(African)			Illumina [4404269] (imputed)	N
1168	chr13	76415378	76415379	rs3736858	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	13q22.2	NR	rs3736858-G		3E-6		0.1374	[0.08-0.195] SD units increase	NR [10700000] (imputed)	N
1168	chr13	76417100	76417101	rs920701	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	13q22.2	LMO7	rs920701-C	36.67	2E-9	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1168	chr13	76431019	76431020	rs75502311	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	13q22.2	LMO7	rs75502311-?		3E-6	(female)	0.397	[0.23-0.56] unit increase	NR [~ 5500000] (imputed)	N
1168	chr13	76445315	76445316	rs9600567	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	13q22.2	C13orf45	rs9600567-T	0.29	5E-6	(male)	0.293	[0.17-0.42] unit decrease	Illumina [6380737] (imputed)	N
1168	chr13	76456576	76456577	rs61959596	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q22.2	Intergenic	rs61959596-T	0.1123	7E-9	(MTAG)	0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr13	76456576	76456577	rs61959596	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q22.2	Intergenic	rs61959596-C	0.8877	3E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1168	chr13	76490882	76490883	rs12875562	32699080	Brhane Y	2020-07-22	Cancer Epidemiol Biomarkers Prev	Genetic determinants of lung cancer prognosis in never smokers: A pooled analysis in the International Lung Cancer Consortium.	Lung adenocarcinoma (survival time) in never smokers	1,065 European ancestry individuals	871 Japanese ancestry individuals	13q22.2	Intergenic	rs12875562-T	NR	4E-8	(EA)	1.71	[1.41-2.07]	Illumina [629283] (imputed)	N
1169	chr13	76666533	76666534	rs4312185	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q22.2	UCHL3	rs4312185-?	NR	7E-6	(choline)	0.15587479	[0.088-0.224] unit increase	Affymetrix [at least 2500000] (imputed)	N
1171	chr13	76882050	76882051	rs1505141	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Incident chronic kidney disease	281 Korean ancestry cases, 3,336 Korean ancestry controls	NA	13q22.2	LMO7DN, KCTD12	rs1505141-C	0.675	6E-7		1.61	[NR]	Affymetrix [up to 1590162] (imputed)	N
1171	chr13	76919959	76919960	rs182404991	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q22.2	NR	rs182404991-C	0.01	3E-6		2.14	[1.83-2.45]	Illumina [8468885] (imputed)	N
1171	chr13	76938816	76938817	rs118149920	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics individuals	NA	13q22.2	NR	rs118149920-?	NR	1E-8		12.5	unit decrease	NR [14100000] (imputed)	N
1172	chr13	76956524	76956525	rs9565267	32650023	Gabryszewski SJ	2020-07-07	J Allergy Clin Immunol	Unsupervised Modeling and Genome-Wide Association Identify Novel Features of Allergic March Trajectories.	Allergic march (atopic dermatitis to allergic rhinitis)	225 African American child cases, 963 African American child controls	148 African American child cases, 1,151 African American child controls	13q22.2	intergenic	rs9565267-?	NR	5E-8				Illumina [52127467] (imputed)	N
1174	chr13	77218572	77218573	rs9573902	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	13q22.2	intergenic	rs9573902-C		9E-6				Illumina [1690491] (imputed)	N
1174	chr13	77246518	77246519	rs181987887	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q22.2	Intergenic	rs181987887-A	0.999	2E-6	(AA)	1.85	NR unit increase	Illumina [NR] (imputed)	N
1175	chr13	77336177	77336178	rs144999906	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	13q22.3	LMO7DN, KCTD12	rs144999906-T	0.1197	6E-6		0.252	[0.14-0.36] unit increase	NR [NR] (imputed)	N
1175	chr13	77390320	77390321	rs1342884	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	13q22.3		rs1342884-C	0.24	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1175	chr13	77421472	77421473	rs4536347	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 270)	19,670 European ancestry individuals	NA	13q22.3		rs4536347-?	NR	3E-8				NR [9705931] (imputed)	N
1176	chr13	77464008	77464009	rs17066873	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antiepileptic drugs in severe mental disorder (concentration drug ratio)	Up to 185 European ancestry cases	NA	13q22.3	intergenic	rs17066873-C	0.039	2E-7		0.9277	[NR] unit decrease	Affymetrix [686595]	N
1176	chr13	77464074	77464075	rs17066875	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q22.3	NR	rs17066875-?	NR	1E-9				Affymetrix [NR]	N
1176	chr13	77475970	77475971	rs674041	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Rumination (response to stress)	1,758 European ancestry individuals	NA	13q22.3	intergenic	rs674041-T	NR	9E-6		0.0937	NR unit decrease	Illumina [3474641] (imputed)	N
1176	chr13	77507587	77507588	rs118052927	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	13q22.3		rs118052927-A	0.0235284	3E-8		0.0818505	[0.053-0.111] unit increase	Illumina [7980478] (imputed)	N
1176	chr13	77516575	77516576	rs589636	25060954	Wolber LE	2014-07-24	Hum Mol Genet	Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.	Hearing function	1,022 European ancestry individuals, 280 Carlantino (founder/genetic isolate) individuals, 1,097 Friuli Venezia Giulia (founder/genetic isolate) individuals, 804 Korcula (founder/genetic isolate) individuals, 497 Split (founder/genetic isolate) individuals, 421 Cilento (founder/genetic isolate) individuals, 470 Talana (founder/genetic isolate) individuals, 348 Silk Road individuals	NA	13q22.3	IRG1, BTF3L1, LOC390413	rs589636-C	NR	7E-8	(PC1)			Affymetrix, Illumina [> 2300000] (imputed)	N
1176	chr13	77537306	77537307	rs598068	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	13q22.3	ACOD1, CLN5	rs598068-A	0.245	2E-6	(male)	0.1122	[0.066-0.159] unit increase	NR [NR] (imputed)	N
1176	chr13	77552270	77552271	rs11149058	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	13q22.3	Mir_633, MYCBP2, KCTD12, FBXL3, DKFZp586G0322, CLN5, BTF3P11, IRG1	rs11149058-T	0.78	1E-6		1.22	[NR]	Illumina [7659573] (imputed)	N
1176	chr13	77557041	77557041	rs34557236	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q22.3	NR	rs34557236-?	NR	9E-9	(right pars triangularis)			NR [9227495] (imputed)	N
1176	chr13	77562491	77562492	rs7996555	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q22.3	CLN5	rs7996555-C	0.945625	1E-10	(CLN5, 8874_53_3)	0.35042074	[0.24-0.46] unit increase	Illumina [> 1000000] (imputed)	N
1176	chr13	77568731	77568732	rs9573971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	13q22.3		rs9573971-?	NR	9E-18				NR [~ 8900000] (imputed)	N
1176	chr13	77570676	77570677	rs7332608	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	13q22.3	NR	rs7332608-G	0.03381	5E-11		0.0313	[0.022-0.041] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1176	chr13	77577026	77577027	rs9565309	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q22.3		rs9565309-T	0.96619	1E-28		0.066	[0.054-0.078] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1176	chr13	77577026	77577027	rs9565309	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	13q22.3	FBXL3, CLN5	rs9565309-T	0.97	4E-8		1.19	[1.12-1.26]	Illumina [7427422] (imputed)	N
1176	chr13	77590740	77590741	rs9573980	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q22.3	FBXL3	rs9573980-A	0.9659	5E-36		1.1311		Affymetrix [11880941] (imputed)	N
1176	chr13	77590740	77590741	rs9573980	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q22.3	FBXL3	rs9573980-A	0.9659	5E-36		1.1348494		Affymetrix [11880941] (imputed)	N
1177	chr13	77696255	77696256	rs9573999	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q22.3	MYCBP2	rs9573999-C	0.9802	1E-18		1.1128422		Affymetrix [11880941] (imputed)	N
1178	chr13	77809253	77809254	rs17750294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q22.3	FBXL3	rs17750294-?	NR	5E-6	(LPC 20:4)	0.33358046	[0.19-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
1178	chr13	77813333	77813334	rs9574021	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q22.3	MYCBP2	rs9574021-A	0.98	8E-19		1.1135		Affymetrix [11880941] (imputed)	N
1178	chr13	77817789	77817790	rs4884060	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		13q22.3	RP11-341G5.1	rs4884060-C	0.021	9E-6		1.575	[0.89-2.26] unit decrease	Illumina [640625] (imputed)	N
1179	chr13	77879375	77879376	rs7322722	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q22.3	MYCBP2	rs7322722-?	NR	1E-6	(EA)	2.93	[1.90-4.52]	Illumina [2485249] (imputed)	N
1179	chr13	77944635	77944636	rs61963491	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q22.3		rs61963491-A	0.994247	2E-12		0.112	[0.081-0.143] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1179	chr13	77944635	77944636	rs61963491	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	13q22.3	NR	rs61963491-G	0.005753	5E-9		0.0313	[0.022-0.041] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1179	chr13	77944635	77944636	rs61963491	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q22.3	MYCBP2, SCEL	rs61963491-A	0.9931	4E-19		1.254		Affymetrix [11880941] (imputed)	N
1179	chr13	77944635	77944636	rs61963491	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q22.3	MYCBP2, SCEL	rs61963491-A	0.9931	4E-19		0.100919	[0.079-0.123] unit increase	Affymetrix [11880941] (imputed)	N
1179	chr13	77944635	77944636	rs61963491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	13q22.3		rs61963491-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1180	chr13	78006779	78006780	rs9600887	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Accommodative esotropia	224 European ancestry cases, 749 European ancestry controls	66 European ancestry cases, 264 European ancestry controls	13q22.3	intergenic	rs9600887-T	0.3	7E-6		1.64	NR	Illumina [6470615] (imputed)	N
1180	chr13	78021217	78021218	rs7317940	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	13q22.3	NR	rs7317940-?		2E-6				Illumina [1211988] (imputed)	N
1180	chr13	78032020	78032021	rs17067745	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	13q22.3	SCEL	rs17067745-A	NR	6E-6		0.191	[0.11-0.27] unit decrease	Illumina [NR] (imputed)	N
1181	chr13	78177845	78177846	rs117778740	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.3	NR	rs117778740-T	0.01916	3E-8	(LTF)	0.2823	NR unit increase	Illumina [1671387] (imputed)	N
1181	chr13	78177845	78177846	rs117778740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q22.3		rs117778740-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1181	chr13	78195412	78195413	rs73229101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q22.3	NR	rs73229101-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1181	chr13	78195412	78195413	rs73229101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q22.3		rs73229101-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1182	chr13	78314418	78314419	rs1144379	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q22.3	NR	rs1144379-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1182	chr13	78314418	78314419	rs1144379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q22.3		rs1144379-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1182	chr13	78354650	78354651	rs7326773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q22.3		rs7326773-G	0.105242	1E-9		0.022112152	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1182	chr13	78354650	78354651	rs7326773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q22.3	NR	rs7326773-G	0.104973	2E-10		0.019909	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1182	chr13	78377833	78377834	rs765377	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	13q22.3	SLAIN1	rs765377-?	NR	3E-34		1.1609008	NR	Affymetrix [9154080] (imputed)	N
1183	chr13	78381145	78381146	rs975739	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	13q22.3	EDNRB	rs975739-G	NR	2E-14		0.08	[0.060-0.100] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1183	chr13	78385207	78385208	rs1759977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q22.3		rs1759977-?	NR	7E-271				NR [~ 8900000] (imputed)	N
1183	chr13	78390742	78390743	rs750192	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	13q22.3	SLAIN1	rs750192-?	NR	7E-145		1.2268434	NR	Affymetrix [9154080] (imputed)	N
1183	chr13	78391756	78391757	rs1279403	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	13q22.3	EDNRB	rs1279403-T	0.406	1E-100		0.079	[0.073-0.085] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
1183	chr13	78399582	78399583	rs9318499	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.3	NR	rs9318499-A	0.01916	6E-12	(LTF)	0.2889	NR unit increase	Illumina [1671387] (imputed)	N
1183	chr13	78403686	78403687	rs1146932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q22.3	EDNRB-AS1	rs1146932-C	0.786378	7E-9		0.015640728	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1183	chr13	78403686	78403687	rs1146932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q22.3	NR	rs1146932-C	0.788315	2E-12		0.015807	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1183	chr13	78403686	78403687	rs1146932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q22.3		rs1146932-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1183	chr13	78404048	78404049	rs1146933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q22.3	EDNRB-AS1	rs1146933-C	0.785561	2E-9		0.016479056	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1183	chr13	78404048	78404049	rs1146933	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q22.3	NR	rs1146933-C	0.785076	2E-11		0.0563967	[0.04-0.073] unit increase	Affymetrix [17914406] (imputed)	N
1183	chr13	78418130	78418131	rs9574113	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	13q22.3	SLAIN1, EDNRB, SCEL, LINC00446, LINC01069	rs9574113-G	0.77	8E-6		1.2658228	[1.14-1.41]	Illumina [792342]	N
1183	chr13	78447372	78447373	rs1924930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q22.3		rs1924930-A	NR	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1183	chr13	78447372	78447373	rs1924930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q22.3		rs1924930-A	0.775388	5E-10		0.016478492	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1183	chr13	78447372	78447373	rs1924930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q22.3		rs1924930-A	0.775383	7E-11		0.017321635	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1183	chr13	78447373	78447374	rs1924929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q22.3	NR	rs1924929-G	0.775881	8E-12		0.015114	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q22.3	EDNRB	rs3818416-A	0.2355	2E-35		0.0279	[0.024-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.3	NR	rs3818416-C	0.80005	5E-11				Affymetrix, Illumina [24588908] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q22.3		rs3818416-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q22.3	NR	rs3818416-?	NR	7E-8	(female)	0.15324	[0.097-0.209] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q22.3	NR	rs3818416-?	NR	3E-6	(male)	0.19075	[0.11-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q22.3	NR	rs3818416-?	NR	3E-11		0.17269	[0.12-0.22] unit increase	Affymetrix [7794483] (imputed)	N
1183	chr13	78474467	78474468	rs3818416	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q22.3	NR	rs3818416-A	0.233809	5E-9		0.0214024	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
1183	chr13	78506125	78506126	rs1924917	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q22.3	NR	rs1924917-C	0.881271	6E-9		0.0608529	[0.04-0.082] unit increase	Affymetrix [17914406] (imputed)	N
1183	chr13	78507150	78507151	rs9318502	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	13q22.3		rs9318502-C	NR	5E-8		0.228403	[0.15-0.31] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1184	chr13	78580282	78580283	rs1819436	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	13q22.3	RNF219, AS1	rs1819436-C	0.87	2E-9		0.0329	[0.022-0.044] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1184	chr13	78589551	78589552	rs9565375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q22.3		rs9565375-G	NR	1E-14		0.013	[0.0097-0.0163] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1184	chr13	78594808	78594809	rs7992650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q22.3		rs7992650-A	NR	3E-12		0.0108	[0.0079-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1184	chr13	78601412	78601413	rs9318511	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q22.3	LINC00446	rs9318511-C	0.873248	6E-12		0.026864	[0.019-0.035] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1184	chr13	78607471	78607472	rs4885512	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	13q22.3	NR	rs4885512-T	0.13	5E-9		0.03311276	[0.022-0.044] unit decrease	NR [1977400] (imputed)	N
1184	chr13	78609614	78609615	rs1330889	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	13q22.3	NR	rs1330889-C	0.87	7E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
1184	chr13	78609803	78609804	rs1330887	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	13q22.3	NR	rs1330887-A	0.123	1E-8		0.0531191	[0.035-0.071] unit decrease	NR [1977400] (imputed)	N
1184	chr13	78620256	78620257	rs4884084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.3	NR	rs4884084-C	0.862002	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
1184	chr13	78620256	78620257	rs4884084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q22.3	NR	rs4884084-C	0.861822	9E-12				Affymetrix, Illumina [24558453] (imputed)	N
1185	chr13	78653947	78653948	rs2439958	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	13q22.3	NR	rs2439958-A	0.888378	4E-9		0.0628157	[0.042-0.084] unit increase	Affymetrix [17914406] (imputed)	N
1185	chr13	78666643	78666644	rs75994395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q22.3		rs75994395-T	NR	1E-8		0.0269	[0.018-0.036] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1185	chr13	78666643	78666644	rs75994395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q22.3	NR	rs75994395-T	0.06635	2E-11		0.025144	[0.018-0.032] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1185	chr13	78672950	78672951	rs2775109	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	13q22.3	NR	rs2775109-?	NR	4E-6		0.0812838	[0.047-0.116] unit decrease	NR [13958389] (imputed)	N
1185	chr13	78693465	78693466	rs188310489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q22.3		rs188310489-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1185	chr13	78693758	78693759	rs1888357	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q22.3	SLAIN1	rs1888357-?	NR	9E-6	(creatinine)	0.16882975	[0.094-0.243] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1185	chr13	78702803	78702804	rs9530730	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	13q22.3	NR	rs9530730-?	NR	9E-6		0.0417	[0.023-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
1185	chr13	78741030	78741031	rs73224739	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RFXAP	5,357 Icelandic ancestry individuals	NA	13q22.3		rs73224739-G	0.01123	2E-12		0.133515	[0.096-0.171] unit increase	Illumina [7506463] (imputed)	N
1185	chr13	78741619	78741620	rs2254690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q22.3		rs2254690-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1186	chr13	78808812	78808813	rs12583965	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q22.3	RNF219-AS1, RP11-203P2.1, RNY3P3, RPL31P54	rs12583965-G	NR	9E-6	(sleep duration)	0.4226	[0.24-0.61] unit increase	Affymetrix [7141204] (imputed)	N
1186	chr13	78808913	78808914	rs9574199	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	13q22.3	EDNRB, POU4F1	rs9574199-?	NR	7E-6		0.004	[NR] unit increase	Illumina [478011]	N
1186	chr13	78836978	78836979	rs117305609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.3	NR	rs117305609-T	0.02439	7E-9	(KRT8)	3.607	NR unit increase	Illumina [1671387] (imputed)	N
1186	chr13	78836978	78836979	rs117305609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.3	NR	rs117305609-T	0.02439	6E-9	(COL14A1)	0.09017	NR unit increase	Illumina [1671387] (imputed)	N
1186	chr13	78836978	78836979	rs117305609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q22.3	NR	rs117305609-T	0.02439	5E-9	(KRT18)	2.155	NR unit increase	Illumina [1671387] (imputed)	N
1186	chr13	78842379	78842380	rs7998826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q22.3		rs7998826-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1186	chr13	78860497	78860498	rs60721117	33453761	Jorgensen CS	2021-01-14	Lancet Child Adolesc Health	Identification of genetic loci associated with nocturnal enuresis: a genome-wide association study.	Nocturnal enuresis	3,882 European ancestry cases, 31,073 European ancestry controls	5,475 European ancestry cases, 303,996 European ancestry controls	13q22.3	NR	rs60721117-CT	0.48	6E-9		1.117	1.076-1.159	NR [496370] (imputed)	N
1186	chr13	78904796	78904797	rs2243517	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	13q22.3	NR	rs2243517-?		1E-8				NR [520857]	N
1186	chr13	78904796	78904797	rs2243517	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	13q22.3	RNF219-AS1	rs2243517-C	NR	4E-8		1.035	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
1187	chr13	78967689	78967690	rs117433199	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	13q22.3	POU4F1	rs117433199-?		2E-6	(EA)	0.397	unit increase	Illumina [1819374] (imputed)	N
1187	chr13	78973222	78973223	rs4884091	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	13q22.3	NR	rs4884091-G	NR	2E-7		1.1553	NR	Illumina [at least 560000] (imputed)	N
1187	chr13	78998938	78998939	rs56910685	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	13q22.3	POU4F1	rs56910685-?	NR	6E-6		4.512	z-score increase	Illumina [1819374] (imputed)	N
1187	chr13	79006201	79006202	rs73228881	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	13q22.3	NR	rs73228881-C	0.1431	3E-6		0.2026	[0.12-0.29] unit increase	Illumina [10677593] (imputed)	N
1187	chr13	79013001	79013002	rs2329086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q22.3	RNF219-AS1	rs2329086-C	0.689501	3E-12		0.01704897	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1187	chr13	79025786	79025787	rs9318552	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	13q22.3	RNF219-AS1	rs9318552-T	0.79	5E-8	(Oz alcohol/week)	0.389	[0.25-0.53] unit increase	Affymetrix [2500000] (imputed)	N
1188	chr13	79038428	79038429	rs9574246	26422391	Yellin JL	2015-09-28	J Pediatr Orthop	Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.	Juvenile osteochondritis dissecans	209 European ancestry cases, 1,855 European ancestry controls	NA	13q22.3	POU4F1-AS1	rs9574246-?		2E-6		1.699	[NR]	Illumina [NR]	N
1188	chr13	79057997	79057998	rs6563046	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	13q22.3	NR	rs6563046-T	0.53	4E-6		2.12	[NR]	Illumina [5326313] (imputed)	N
1188	chr13	79064276	79064277	rs9565423	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q22.3	NR	rs9565423-A	0.411	2E-10		0.007102	[0.0049-0.0093] unit increase	NR [9732723] (imputed)	N
1188	chr13	79097726	79097727	rs9530800	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.1	C13orf7	rs9530800-?	NR	6E-6	(carnosine)	0.8265489	[0.47-1.18] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1188	chr13	79098805	79098806	rs192897046	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q31.1	Intergenic	rs192897046-?		6E-6		1.1	[1.06-1.15]	Illumina [7645193] (imputed)	N
1188	chr13	79098805	79098806	rs192897046	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q31.1	Intergenic	rs192897046-?		6E-6		2.5	[1.68-3.71]	Illumina [7645193] (imputed)	N
1188	chr13	79155611	79155612	rs1409005	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	13q31.1	POU4F1-AS1	rs1409005-T	0.2	5E-7	(AA)	0.25	[0.15-0.35] unit increase	Illumina [up to 905285]	N
1189	chr13	79238924	79238925	rs4304924	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q31.1	RNF219	rs4304924-A	0.568	3E-11		0.116	[0.082-0.15] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1189	chr13	79238924	79238925	rs4304924	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	13q31.1	RNF219	rs4304924-?	NR	5E-6		1.1765	[1.1-1.27]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1189	chr13	79251405	79251406	rs9601116	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q31.1	NR	rs9601116-A	0.183351229610739	4E-9		0.008635822	[0.0058-0.0115] unit increase	NR [NR]	N
1189	chr13	79251405	79251406	rs9601116	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q31.1	NR	rs9601116-A	0.183351229610739	3E-9		0.011243656	[0.0075-0.015] unit increase	NR [NR]	N
1189	chr13	79251405	79251406	rs9601116	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q31.1	NR	rs9601116-A	0.183351229610739	3E-9		0.007200593	[0.0048-0.0096] unit increase	NR [NR]	N
1189	chr13	79285727	79285728	rs9530814	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference	298 individuals	NA	13q31.1	NR	rs9530814-?	NR	2E-8			[NR]	NR [1665663]	N
1190	chr13	79344963	79344964	rs9601120	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q31.1	NR	rs9601120-T	0.186078275522774	4E-9		0.0069396216	[0.0046-0.0093] unit increase	NR [NR]	N
1190	chr13	79344963	79344964	rs9601120	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q31.1	NR	rs9601120-T	0.186078275522774	1E-8		0.009087366	[0.006-0.0122] unit increase	NR [NR]	N
1190	chr13	79359423	79359424	rs17070284	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	13q31.1	RP11-600P1.2	rs17070284-?	NR	3E-6	(COWA)			Illumina [up to 563855]	N
1190	chr13	79380815	79380816	rs2184180	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q31.1	NR	rs2184180-G	0.362504259025271	5E-6	(IGP52)	0.1637	[0.093-0.234] unit increase	Illumina [~ 2500000] (imputed)	N
1190	chr13	79382100	79382101	rs9574309	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q31.1	NR	rs9574309-C	0.432876341880342	2E-6	(IGP12)	0.1596	[0.093-0.226] unit increase	Illumina [~ 2500000] (imputed)	N
1190	chr13	79410573	79410574	rs11838918	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	13q31.1	intergenic	rs11838918-C	0.066	3E-7	(AA)	0.278	[NR] unit increase	Illumina [948658]	N
1190	chr13	79410573	79410574	rs11838918	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	13q31.1	intergenic	rs11838918-C	0.022	1E-8		0.28	[NR] unit increase	Illumina [948658]	N
1190	chr13	79410573	79410574	rs11838918	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	13q31.1	intergenic	rs11838918-C	0.022	3E-6		2.26	[1.61-3.18]	Illumina [948658]	N
1191	chr13	79433940	79433941	rs9565451	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	13q31.1	intergenic	rs9565451-A	0.42	1E-6		7.43	NR mg increase	NR [NR] (imputed)	N
1191	chr13	79455831	79455832	rs1218282	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	13q31.1	LOC390415, LOC647298, C13orf7	rs1218282-C	0.06	5E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1191	chr13	79550933	79550934	rs7319358	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	13q31.1	intergenic	rs7319358-A	NR	3E-6	(Analysis II)			Illumina [313720]	N
1191	chr13	79554393	79554394	rs1980992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs1980992-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1192	chr13	79561961	79561962	rs4421883	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q31.1	NA	rs4421883-T	0.4946	2E-9		0.0103	[0.007-0.0136] unit decrease	NR [~ 27400000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	13q31.1		rs1441264-A	0.59	2E-9				NR [NR] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	13q31.1		rs1441264-A	0.59	9E-14		0.012	% increase	NR [NR] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs1441264-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q31.1		rs1441264-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q31.1	NR	rs1441264-G	NR	2E-12		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q31.1	RBM26	rs1441264-A	0.6192	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	13q31.1	RBM26	rs1441264-A	0.6192	9E-6		0.016	[0.0089-0.0231] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	13q31.1	NR	rs1441264-A	0.60643368554297	1E-7		0.015219978	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1192	chr13	79580918	79580919	rs1441264	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q31.1	MIR548A2	rs1441264-A	0.613	3E-8		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1192	chr13	79580918	79580919	rs1441264	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q31.1	MIR548A2	rs1441264-A	0.609	6E-8	(EA)	0.018	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1192	chr13	79587840	79587841	rs1576655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q31.1		rs1576655-C	NR	3E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1192	chr13	79587840	79587841	rs1576655	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	13q31.1	RBM26	rs1576655-A	0.404079	4E-16		0.0118472	[0.009-0.0147] unit decrease	Affymetrix [12370749]	N
1192	chr13	79587840	79587841	rs1576655	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q31.1	RBM26	rs1576655-A	0.404079	2E-15		0.0113489	[0.0086-0.0141] unit decrease	Affymetrix [12370749]	N
1192	chr13	79588107	79588108	rs61967118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs61967118-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1193	chr13	79791119	79791120	rs79995736	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q31.1	NR	rs79995736-?	NR	4E-8		5.481	NR z score decrease	Illumina [at least 830937] (imputed)	N
1193	chr13	79808654	79808655	rs7988232	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q31.1	RBM26	rs7988232-A	0.416	3E-9		0.148	[0.099-0.197] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1194	chr13	79837908	79837909	rs140450941	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	13q31.1	RBM26	rs140450941-C	0.0133	6E-6		0.2072	[0.12-0.3] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1194	chr13	79859455	79859456	rs9545047	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q31.1	NR	rs9545047-A	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1194	chr13	79888475	79888476	rs1155848	20014019	Dubinsky MC	2010-08-01	Inflamm Bowel Dis	Genome wide association (GWA) predictors of anti-TNFalpha therapeutic responsiveness in pediatric inflammatory bowel disease.	Response to anti-TNF alpha therapy in inflammatory bowel disease	94 pediatric cases	NA	13q31.1	RBM26	rs1155848-?	NR	5E-7		35.73	[NR]	Illumina [301742]	N
1194	chr13	79940528	79940529	rs2274554	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	13q31.1		rs2274554-A	0.41	3E-10		0.08	unit decrease	Illumina [2093892] (imputed)	N
1194	chr13	79940528	79940529	rs2274554	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	13q31.1		rs2274554-A	0.41	9E-8		0.08	unit decrease	Illumina [2398641] (imputed)	N
1195	chr13	80006809	80006810	rs418150	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs418150-?	NR	2E-31				Affymetrix [NR]	N
1196	chr13	80162554	80162555	rs9545142	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	13q31.1	LINC01068	rs9545142-?	NR	2E-8	(EA)	0.0737	[0.048-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80165759	80165760	rs9530936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.1	RBM26	rs9530936-?	NR	6E-6	(LPC 20:5)	0.2211627	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1196	chr13	80168005	80168006	rs1414154	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q31.1	LINC01068, LINC01038	rs1414154-C	0.3841	2E-10		0.0912	[0.063-0.12] unit increase	Affymetrix [~ 11900000] (imputed)	N
1196	chr13	80168719	80168720	rs2783129	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	13q31.1	LINC01068	rs2783129-C	0.5145	5E-7		0.0077	[0.0048-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1196	chr13	80169003	80169004	rs9601248	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	13q31.1	NDFIP2	rs9601248-C	0.498	2E-6	(remission - 12 weeks)	1.3841	[1.25-1.52]	Affymetrix, Illumina [1200000] (imputed)	N
1196	chr13	80170159	80170160	rs2783130	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q31.1		rs2783130-A	0.516	2E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1196	chr13	80170159	80170160	rs2783130	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q31.1	NDFIP2	rs2783130-A	0.5229	1E-8		0.011386399	[0.0074-0.0153] unit increase	Affymetrix [11514654] (imputed)	N
1196	chr13	80173759	80173760	rs9545145	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	13q31.1	NR	rs9545145-A	0.4941	1E-7	(Lingual)	9.32484	[5.9-12.75] unit decrease	Affymetrix, Illumina [NR]	N
1196	chr13	80183352	80183353	rs1932197	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	13q31.1		rs1932197-?	NR	2E-8				NR [9705931] (imputed)	N
1196	chr13	80188701	80188702	rs9601250	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	13q31.1	LINC01068	rs9601250-?	NR	2E-13	(EA)	0.1037	[0.076-0.131] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80190069	80190070	rs11350613	30102679	Hara M	2018-08-10	Med Sci Sports Exerc	Genome-wide Association Study of Leisure-Time Exercise Behavior in Japanese Adults.	Leisure-time exercise behaviour (age-stratified)	6,749 Japanese ancestry active and inactive individuals aged over 56, 7,231 Japanese ancestry active and inactive individuals aged under 56	1,129 Japanese ancestry active and inactive individuals aged over 56, 907 Japanese ancestry active and inactive individuals aged under 56	13q31.1	NDFIP2, SPRY2	rs11350613-CT	0.468	4E-6	(over 56 years)	0.0283	[0.016-0.040] unit increase	Illumina [up to 7094228] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q31.1		rs9545155-C	0.5	6E-16		8.09	z score increase	Affymetrix [9061022] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q31.1	NR	rs9545155-C	0.4783	3E-14				NR [9056863] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	13q31.1	LINC01068	rs9545155-?		2E-13	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	13q31.1	LINC01068	rs9545155-?		4E-17	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	13q31.1	LINC01038	rs9545155-?		4E-13	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	13q31.1	RDH14, NT5C1B-RDH14, NT5C1B	rs9545155-?		9E-11				NR [7428630] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	13q31.1	MAGI1	rs9545155-?		3E-10				NR [7428630] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q31.1	NR	rs9545155-C	0.478	9E-13		0.00769768	[0.0056-0.0098] unit decrease	NR [9732723] (imputed)	N
1196	chr13	80191872	80191873	rs9545155	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q31.1	NR	rs9545155-C	0.478	3E-10		0.01607088	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1196	chr13	80192235	80192236	rs9545156	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	13q31.1	LINC01068	rs9545156-?		4E-10	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
1196	chr13	80192905	80192906	rs9545158	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q31.1		rs9545158-A	0.5	5E-22		9.65	z score increase	Affymetrix [9061022] (imputed)	N
1196	chr13	80192905	80192906	rs9545158	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q31.1	NR	rs9545158-A	0.4784	1E-17				NR [9056863] (imputed)	N
1196	chr13	80192905	80192906	rs9545158	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	13q31.1	NR	rs9545158-?		1E-9				NR [7428630] (imputed)	N
1196	chr13	80192905	80192906	rs9545158	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	13q31.1	NR	rs9545158-A	0.4642	2E-15	(Pericalcarine)	8.184794	[6.16-10.2] unit increase	Affymetrix, Illumina [NR]	N
1197	chr13	80219664	80219665	rs9574450	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	13q31.1	LINC01068, LINC01038	rs9574450-C	0.6388	1E-9		0.089	[0.06-0.118] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1197	chr13	80244120	80244121	rs61291112	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	13q31.1	NR	rs61291112-T	0.09	9E-6		1.19	NR	Affymetrix, Illumina [6957974] (imputed)	N
1197	chr13	80297015	80297016	rs7317102	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs7317102-?	NR	2E-7				Affymetrix [NR]	N
1197	chr13	80299721	80299722	rs2039553	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	13q31.1	NDFIP2	rs2039553-A	0.27	7E-6	(recessive)	1.73	[1.36-2.19]	Illumina [420236]	N
1198	chr13	80358318	80358319	rs17071846	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	13q31.1	NR	rs17071846-G	0.0930667	6E-6		1.064	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1198	chr13	80361075	80361076	rs111336231	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs111336231-G	0.01568	3E-8	(HEBP1)	0.05509	NR unit increase	Illumina [1671387] (imputed)	N
1198	chr13	80376003	80376004	rs12584389	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	13q31.1	NR	rs12584389-?		1E-6				Illumina [892589]	N
1198	chr13	80406219	80406220	rs1889642	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q31.1	Intergenic	rs1889642-?	NR	3E-6		1.361	[NR]	Affymetrix [492217] (imputed)	N
1198	chr13	80426641	80426642	rs187319756	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	13q31.1	NR	rs187319756-?	NR	7E-6		0.1255	[0.071-0.18] unit increase	Illumina [at least 560000] (imputed)	N
1198	chr13	80456951	80456952	rs9601280	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	13q31.1	NDFIP2	rs9601280-T	0.795173	1E-8		0.9697707	NR	Affymetrix [~ 9600000] (imputed)	N
1198	chr13	80465616	80465617	rs9601285	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q31.1	NR	rs9601285-T		4E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
1198	chr13	80467234	80467235	rs4885681	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	13q31.1	LINC00382	rs4885681-T	0.7248	2E-9		0.0171	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1198	chr13	80467234	80467235	rs4885681	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q31.1	LINC00382	rs4885681-T	0.7248	1E-11		0.018	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1198	chr13	80467234	80467235	rs4885681	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	13q31.1	LINC00382	rs4885681-T	0.7248	2E-12		0.0186	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
1198	chr13	80467234	80467235	rs4885681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q31.1		rs4885681-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1199	chr13	80489124	80489126	rs66516258	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	13q31.1		rs66516258-T	0.180894748	1E-9				Illumina [7417619] (imputed)	N
1199	chr13	80512486	80512487	rs4052505	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q31.1	NA	rs4052505-?		8E-20				Affymetrix, Illumina [NR] (imputed)	N
1199	chr13	80551562	80551563	rs9531006	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	13q31.1	SPRY2	rs9531006-?	NR	4E-7	(EA)	2.43	[1.49-3.37] unit increase	Affymetrix, Illumina [2033301]	N
1199	chr13	80603181	80603182	rs17072133	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q31.1	Intergenic	rs17072133-T	NR	5E-6	(men)	0.0382184	[0.022-0.055] unit decrease	Illumina [13520550] (imputed)	N
1200	chr13	80616204	80616205	rs3764106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q31.1		rs3764106-T	0.46	1E-11		6.78	z score increase	Affymetrix [9061022] (imputed)	N
1200	chr13	80616204	80616205	rs3764106	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q31.1	NR	rs3764106-T	0.4513	3E-10				NR [9056863] (imputed)	N
1200	chr13	80623345	80623346	rs7981942	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	13q31.1	SPRY2	rs7981942-A	0.7782	2E-6		9.71E-4	[-0.0004-0.00234] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1200	chr13	80626421	80626422	rs11303055	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	13q31.1		rs11303055-T	NR	2E-6	(additive)	0.595	[0.35-0.841] unit increase	Illumina [5894709] (imputed)	N
1200	chr13	80631416	80631417	rs9574547	30103242	Karhausen JA	2018-08-13	Thromb Haemost	Genome-Wide Association Study Links Receptor Tyrosine Kinase Inhibitor Sprouty 2 to Thrombocytopenia after Coronary Artery Bypass Surgery.	Thrombocytopenia in coronary artery bypass surgery	176 European ancestry cases, 268 European ancestry cases	76 European ancestry cases, 70 European ancestry cases	13q31.1	LOC729479, SPRY2	rs9574547-A	0.72	8E-6		2.2222223	[1.49-3.33]	Illumina [525066]	N
1200	chr13	80639404	80639405	rs9545308	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	13q31.1	SPRY2	rs9545308-A	0.12	2E-9		1.29		Illumina [803202]	N
1200	chr13	80644617	80644618	rs12431307	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	intergenic	rs12431307-G	0.412	5E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1200	chr13	80646365	80646366	rs9574556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.1		rs9574556-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1200	chr13	80668873	80668874	rs9574565	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	13q31.1	SPRY2	rs9574565-C	0.74	3E-7		1.31	[1.01-1.70]	Illumina [521288]	N
1200	chr13	80679301	80679302	rs11841646	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q31.1	NR	rs11841646-?	NR	6E-6		1.08	[1.02-1.14]	Illumina [539000] (imputed)	N
1200	chr13	80679301	80679302	rs11841646	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	13q31.1	SPRY2	rs11841646-?	NR	3E-8		1.19	[1.07-1.33] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1200	chr13	80679301	80679302	rs11841646	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	13q31.1	SPRY2	rs11841646-?	NR	4E-10		1.33	[1.17-1.50] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1200	chr13	80689618	80689619	rs73241024	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	13q31.1	NR	rs73241024-?		3E-7		1.53	[1.30-1.81]	Illumina [539473] (imputed)	N
1200	chr13	80691351	80691352	rs1215465	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	13q31.1	NR	rs1215465-?	NR	9E-11		0.32	[0.22-0.42] unit decrease	NR [7618724] (imputed)	N
1200	chr13	80692810	80692811	rs8001641	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	13q31.1		rs8001641-?		4E-8				Illumina [NR]	N
1200	chr13	80692810	80692811	rs8001641	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q31.1	SPRY2	rs8001641-A	NR	9E-11	(Meta-All, NSCLP)	1.354	[1.141-1.607]	NR [497084]	N
1200	chr13	80692810	80692811	rs8001641	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q31.1	SPRY2	rs8001641-A	NR	3E-10	(Meta-All, NSCL/P)	1.307	[1.13-1.511]	NR [497084]	N
1200	chr13	80696759	80696760	rs1215461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q31.1		rs1215461-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q31.1		rs11616380-T	NR	2E-14		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	13q31.1		rs11616380-T	NR	9E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q31.1	NR	rs11616380-G	0.7206	8E-54		0.0793	[0.069-0.089] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q31.1	NR	rs11616380-G	0.7299	1E-69		0.0764	[0.068-0.085] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		13q31.1	SPRY2	rs11616380-G	NR	1E-7		1.0974618		Affymetrix, Illumina [1918233] (imputed)	N
1200	chr13	80705314	80705315	rs11616380	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	13q31.1	SPRY2	rs11616380-G	NR	3E-6	(Japanese)	1.08429	[1.04812-1.12172]	Illumina [7521072] (imputed)	N
1200	chr13	80705729	80705730	rs17072370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q31.1		rs17072370-A	0.273034018	3E-15		0.08201188	[0.062-0.102] unit decrease	Illumina [13429769] (imputed)	N
1200	chr13	80705729	80705730	rs17072370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q31.1		rs17072370-A	0.26889502	4E-9		0.06554157	[0.044-0.087] unit decrease	Illumina [13134967] (imputed)	N
1200	chr13	80707407	80707408	rs1215469	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	13q31.1	SPRY2	rs1215469-A	0.2295	5E-11		0.1383	[0.097-0.18] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1200	chr13	80707428	80707429	rs1215468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q31.1		rs1215468-G	NR	4E-27		0.0749	[0.061-0.088] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1200	chr13	80707428	80707429	rs1215468	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q31.1	SPRY2	rs1215468-A	0.719	1E-31		1.09	[1.08-1.11]	Affymetrix, Illumina [11800000] (imputed)	N
1200	chr13	80707428	80707429	rs1215468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	13q31.1		rs1215468-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1200	chr13	80708731	80708732	rs1327315	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	13q31.1	NR	rs1327315-C	0.7342	6E-19		0.0908	[0.071-0.111] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1200	chr13	80708731	80708732	rs1327315	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	13q31.1	SPRY2	rs1327315-C	0.73	2E-19		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q31.1		rs1359790-A	NR	1E-21		0.08	[0.064-0.096] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	13q31.1	SPRY2	rs1359790-G	0.31	2E-8		1.1160713	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	13q31.1	SPRY2	rs1359790-A	0.288114	1E-15		0.10285531	[0.078-0.128] unit decrease	Affymetrix [7288503] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q31.1	SPRY2	rs1359790-G	0.7201	2E-31		1.09	[1.07-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	13q31.1	LOC105370275, SPRY2	rs1359790-A	0.286699863937315	3E-23		0.0796	[0.064-0.095] unit decrease	NR [5035015] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q31.1	SPRY2	rs1359790-A	0.2674	8E-12	(EA)	0.0766	[0.055-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q31.1	SPRY2	rs1359790-A	0.2674	1E-15		0.071	[0.053-0.089] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	13q31.1	SPRY2	rs1359790-G	0.73	6E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [2500000] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	13q31.1	SPRY2	rs1359790-G	0.718542080796193	1E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1200	chr13	80717155	80717156	rs1359790	20862305	Shu XO	2010-09-16	PLoS Genet	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	13q31.1	SPRY2	rs1359790-G	0.71	6E-9		1.15	[1.10-1.20]	Affymetrix [590887]	N
1200	chr13	80717841	80717843	rs200752045	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	13q31.1		rs200752045-A	0.283632571	2E-18		0.9213114	[0.904556459-0.938376648]	Illumina [8919992] (imputed)	N
1200	chr13	80725416	80725417	rs55713740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q31.1		rs55713740-G	NR	2E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1200	chr13	80725416	80725417	rs55713740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	13q31.1		rs55713740-G	NR	6E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1200	chr13	80732598	80732598	rs56866051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	13q31.1		rs56866051-AG	NR	7E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1201	chr13	80771406	80771407	rs2183342	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	NA	13q31.1	NR	rs2183342-C	NR	8E-6	(EA)	2.607	[1.686-4.031]	Illumina [34985077] (imputed)	N
1201	chr13	80797106	80797107	rs1146937	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	13q31.1	SPRY2	rs1146937-?	NR	7E-7				NR [3144808] (imputed)	N
1201	chr13	80818415	80818416	rs390195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.1		rs390195-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1201	chr13	80818924	80818926	rs371173016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q31.1		rs371173016-T	NR	3E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1201	chr13	80819728	80819729	rs1146942	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	13q31.1	intergenic	rs1146942-?	NR	5E-6	(Male, Post-puberty)	0.136	[0.077-0.195] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1201	chr13	80822755	80822756	rs9545359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q31.1	NR	rs9545359-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1201	chr13	80826372	80826373	rs9545360	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	13q31.1	NR	rs9545360-C	0.8193	7E-9		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
1201	chr13	80845640	80845641	rs171156	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	13q31.1	NR	rs171156-?		1E-7	(PCB180)	0.62	[0.38-0.86] unit decrease	Illumina [8736858] (imputed)	N
1201	chr13	80870877	80870878	rs2988114	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	13q31.1	NR	rs2988114-?	NR	3E-8	(Clostridium_jejuense)	2.47432	[2.15-2.79]	Illumina [5293637] (imputed)	N
1202	chr13	80875421	80875422	rs1755255	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	13q31.1	NR	rs1755255-C	0.7119	8E-7		0.0064	[0.0039-0.0089] unit increase	NR [7666894] (imputed)	N
1202	chr13	80916855	80916856	rs7981906	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q31.1	SPRY2, LINC00377	rs7981906-?	NR	1E-6		0.014547615	[0.0087-0.0204] unit decrease	Illumina [27896057] (imputed)	N
1202	chr13	80918116	80918117	rs524278	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q31.1	SPRY2	rs524278-T	0.718	3E-9		0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1202	chr13	80918116	80918117	rs524278	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	13q31.1	SPRY2	rs524278-T	0.7255	8E-9		0.012545946	[0.0083-0.0168] unit increase	Illumina [9339358] (imputed)	N
1202	chr13	80958287	80958288	rs693839	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	13q31.1	SPRY2	rs693839-C	0.32	7E-9		0.028	[0.018-0.038] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1202	chr13	80958287	80958288	rs693839	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	13q31.1	SPRY2	rs693839-C	0.32	4E-7	(men)	0.034	[0.021-0.047] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1202	chr13	80958287	80958288	rs693839	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	13q31.1	SPRY2	rs693839-C	0.31	9E-9	(European)	0.03	[0.02-0.04] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1202	chr13	80958287	80958288	rs693839	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	13q31.1	SPRY2	rs693839-C	0.31	2E-7	(European men)	0.038	[0.024-0.052] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1202	chr13	80959206	80959207	rs534870	21706003	Kilpelainen TO	2011-06-26	Nat Genet	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	13q31.1	SPRY2	rs534870-A	0.68	7E-8		0.03	[NR] % decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1203	chr13	81062940	81062941	rs1930336	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	13q31.1	SPRY2	rs1930336-?		3E-6		0.346	[NR] unit increase	Illumina [430487]	N
1203	chr13	81076191	81076192	rs1930326	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs1930326-?	NR	1E-11				Affymetrix [NR]	N
1203	chr13	81104259	81104260	rs68177066	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	13q31.1		rs68177066-C	0.34	7E-12				NR [NR] (imputed)	N
1203	chr13	81104259	81104260	rs68177066	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	13q31.1		rs68177066-C	0.34	3E-10		0.01	% increase	NR [NR] (imputed)	N
1203	chr13	81104259	81104260	rs68177066	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	13q31.1		rs68177066-C	0.34	6E-12		0.014	U/L decrease	NR [NR] (imputed)	N
1203	chr13	81120550	81120550	rs33942389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q31.1		rs33942389-CT	NR	4E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1203	chr13	81127381	81127382	rs9574682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q31.1		rs9574682-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1204	chr13	81161097	81161098	rs17072871	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q31.1	NR	rs17072871-?		9E-6				Illumina [4322238] (imputed)	N
1204	chr13	81167980	81167981	rs9545502	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q31.1	NR	rs9545502-?	NR	8E-10	(left precentral)			NR [9227495] (imputed)	N
1204	chr13	81188247	81188248	rs1772578	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	13q31.1	SPRY2	rs1772578-G	0.424498955613577	1E-6	(AA)	0.3538	[0.21-0.5] unit decrease	Illumina [at least 988306] (imputed)	N
1204	chr13	81190352	81190353	rs9574700	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q31.1	NR	rs9574700-?		4E-6				Illumina [4322238] (imputed)	N
1204	chr13	81191175	81191176	rs1772572	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q31.1	NR	rs1772572-A	0.324132	6E-10	(Conditioned on chr13:80191873)	0.016868144	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1204	chr13	81193432	81193433	rs1772570	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	13q31.1		rs1772570-G	0.66974	6E-14		0.0684018	[0.049-0.087] increase	Affymetrix [11014269] (imputed)	N
1204	chr13	81193432	81193433	rs1772570	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	13q31.1	HNRNPA1P31	rs1772570-C	0.315	2E-8		2.368	[1.54-3.19] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1204	chr13	81198666	81198667	rs7996803	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	13q31.1	NR	rs7996803-T	0.7302	2E-7	(Pars Triangularis)	5.3703814	[3.36-7.38] unit decrease	Affymetrix, Illumina [NR]	N
1204	chr13	81205227	81205228	rs9574705	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9574705-G	0.797173	4E-8		0.0617842	[0.039-0.084] decrease	Affymetrix [11014269] (imputed)	N
1204	chr13	81227242	81227243	rs1176321	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	13q31.1	SPRY2	rs1176321-?	NA	9E-12		1.77	[1.26-2.28] unit increase	Affymetrix [5541230] (imputed)	N
1204	chr13	81260149	81260150	rs9531104	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q31.1		rs9531104-T	0.23	2E-37		12.8	z score increase	Affymetrix [9061022] (imputed)	N
1204	chr13	81260149	81260150	rs9531104	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 281)	19,670 European ancestry individuals	NA	13q31.1		rs9531104-?	NR	5E-12				NR [9705931] (imputed)	N
1204	chr13	81260149	81260150	rs9531104	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	13q31.1	AC021860.1, KLF3	rs9531104-?		6E-16				NR [7428630] (imputed)	N
1205	chr13	81274649	81274650	rs9545537	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q31.1	NR	rs9545537-G	0.223	4E-10		0.00818229	[0.0056-0.0107] unit decrease	NR [9732723] (imputed)	N
1205	chr13	81291961	81291962	rs1361580	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q31.1		rs1361580-C	0.21	4E-35		12.36	z score increase	Affymetrix [9061022] (imputed)	N
1205	chr13	81291961	81291962	rs1361580	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q31.1	NR	rs1361580-C	0.2048	1E-17				NR [9056863] (imputed)	N
1205	chr13	81292392	81292393	rs9531107	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q31.1	NR	rs9531107-?	NR	2E-8	(right pars triangularis)			NR [9227495] (imputed)	N
1205	chr13	81309565	81309566	rs7984594	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q31.1		rs7984594-G	0.18	7E-28		10.94	z score increase	Affymetrix [9061022] (imputed)	N
1205	chr13	81309565	81309566	rs7984594	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q31.1	NR	rs7984594-G	0.185	1E-17				NR [9056863] (imputed)	N
1205	chr13	81316879	81316879	rs775918206	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q31.1	NR	rs775918206-?	NR	1E-8	(left precentral)			NR [9227495] (imputed)	N
1205	chr13	81329577	81329578	rs9545549	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	13q31.1	NCKAP5	rs9545549-?		3E-10				NR [7428630] (imputed)	N
1205	chr13	81329577	81329578	rs9545549	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	13q31.1	NR	rs9545549-?		2E-19				NR [7428630] (imputed)	N
1205	chr13	81357670	81357671	rs11149178	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q31.1	NR	rs11149178-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1205	chr13	81357670	81357671	rs11149178	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	13q31.1	intergenic	rs11149178-A	0.3560899	7E-6	(% improvement - SSRI treated - 12 weeks)	0.1777	[0.1-0.26] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
1205	chr13	81373619	81373620	rs17073357	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	13q31.1	NR	rs17073357-?	NR	5E-8	(left precentral)			NR [9227495] (imputed)	N
1206	chr13	81441794	81441795	rs1342583	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	13q31.1	NR	rs1342583-A	0.5695	5E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
1206	chr13	81471112	81471113	rs2478208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.1	Intergenic	rs2478208-C	0.518	9E-9	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1206	chr13	81471112	81471113	rs2478208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q31.1		rs2478208-C	0.5204	3E-13		0.0103	[0.0076-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1206	chr13	81471112	81471113	rs2478208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q31.1	Intergenic	rs2478208-C	0.5204	5E-14	(MTAG)	0.0099	[0.0074-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1206	chr13	81475441	81475442	rs9601485	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	13q31.1	intergenic	rs9601485-?	NR	3E-7				Illumina [659211]	N
1206	chr13	81494097	81494098	rs4278628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.1		rs4278628-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1206	chr13	81504842	81504843	rs7332642	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs7332642-?	NR	6E-8				Affymetrix [NR]	N
1207	chr13	81536364	81536365	rs189465671	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q31.1	Intergenic	rs189465671-T	NR	2E-7	(between families)	5.246	unit increase	Affymetrix [up to 15107142] (imputed)	N
1207	chr13	81550448	81550449	rs6563199	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	13q31.1	SPRY2	rs6563199-T	0.352	1E-8		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1207	chr13	81631781	81631782	rs7988627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	13q31.1		rs7988627-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1208	chr13	81697058	81697059	rs116963302	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	13q31.1	HIGD1AP2	rs116963302-A	0.468	4E-6		0.2633	[0.15-0.38] unit increase	Illumina [up to 38043574] (imputed)	N
1208	chr13	81734531	81734534	rs66583767	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	13q31.1	NR	rs66583767-C		5E-6		0.3418	[0.19-0.49] SD units increase	NR [10700000] (imputed)	N
1208	chr13	81744379	81744380	rs7985509	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q31.1	NR	rs7985509-G	NR	1E-8	(GEE model)	0.81664	[0.54-1.1] unit increase	NR [NR] (imputed)	N
1208	chr13	81758645	81758646	rs11838885	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs11838885-?	NR	7E-6				Affymetrix [NR]	N
1208	chr13	81779869	81779870	rs73525667	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	13q31.1	Intergenic	rs73525667-A		4E-7		0.243	[NR] unit increase	Illumina [24111857] (imputed)	N
1209	chr13	81801667	81801668	rs9574793	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q31.1	NR	rs9574793-G	0.436	3E-6	(Females)	0.234561	[0.14-0.33] unit decrease	Illumina [~ 6600000] (imputed)	N
1209	chr13	81854871	81854872	rs375852527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	13q31.1		rs375852527-C	0.001823592	9E-9		1.2898817	[0.85-1.73] unit increase	Illumina [13428249] (imputed)	N
1209	chr13	81854871	81854872	rs375852527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric cancer	1,029 European ancestry cases, 475,087 European ancestry controls, 7,921 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	13q31.1		rs375852527-C	NR	9E-9		1.2899	[0.85-1.73] unit increase	Affymetrix, Illumina [25843697] (imputed)	N
1210	chr13	82027099	82027100	rs9574883	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q31.1	NR	rs9574883-A	0.48	6E-6		0.94	[0.9-0.98]	Illumina [8468885] (imputed)	N
1211	chr13	82060793	82060794	rs9545729	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.1	NDFIP2	rs9545729-?	NR	2E-6	(thyroxine)	0.29536685	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1211	chr13	82075591	82075592	rs9545740	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	intergenic	rs9545740-A	0.408	7E-7	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1211	chr13	82087144	82087145	rs61483094	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	13q31.1		rs61483094-A	0.0606	7E-7		0.2	[0.12-0.28] unit increase	Illumina [21233433] (imputed)	N
1211	chr13	82161898	82161899	rs17074492	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	13q31.1	LOC105370283, PTMAP5	rs17074492-?		2E-6		1.37	[1.20-1.56]	Illumina [1444884]	N
1211	chr13	82161898	82161899	rs17074492	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	13q31.1	LOC105370283, PTMAP5	rs17074492-?		6E-8		1.53	[1.31-1.79]	Illumina [1444884]	N
1212	chr13	82200649	82200650	rs74472919	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	13q31.1	NR	rs74472919-C		4E-8		0.3313	[0.21-0.45] SD units decrease	NR [10700000] (imputed)	N
1212	chr13	82210024	82210025	rs9545807	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.1	NDFIP2	rs9545807-?	NR	2E-6	(thyroxine)	0.30218378	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1213	chr13	82400302	82400303	rs79249484	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs79249484-?	NR	7E-6		2630.757	NR unit decrease	Illumina [2379855]	N
1213	chr13	82412625	82412626	rs9601722	34270794	Watts K	2021-07-16	Int J Cancer	Genome-wide association studies of toxicity to oxaliplatin and fluoropyrimidine chemotherapy with or without cetuximab in 1800 patients with advanced colorectal cancer.	Adverse response to chemotherapy in colorectal cancer (FOLFOX,Cetuximab) (Neutropenia)	360 European ancestry individuals	NA	13q31.1		rs9601722-?		5E-6		3.4	[2.0-5.7]	NR [4178858] (imputed)	N
1213	chr13	82425592	82425593	rs562150915	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	13q31.1	PTMAP5	rs562150915-T	0.0126	1E-6		0.2711	[0.16-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1213	chr13	82439896	82439897	rs9593609	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	13q31.1		rs9593609-C	0.053593226	2E-6		0.03046702	[0.018-0.043] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1214	chr13	82446912	82446913	rs9545903	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	13q31.1	intergenic	rs9545903-C	NR	7E-6		1.747	[1.37-2.228]	Illumina [5407269] (imputed)	N
1214	chr13	82471870	82471871	rs7337123	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	3,608 European ancestry individuals, 838 African American individuals	NA	13q31.1		rs7337123-A	0.05	7E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1214	chr13	82511121	82511122	rs4885797	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	13q31.1	NR	rs4885797-G		9E-6		0.1063	[0.059-0.153] SD units increase	NR [10700000] (imputed)	N
1215	chr13	82581441	82581442	rs1497062	26194203	Ramachandran D	2015-07-20	G3 (Bethesda)	Genome-Wide Association Study of Down Syndrome-Associated Atrioventricular Septal Defects.	Atrioventricular septal defects in Down syndrome	210 European ancestry cases with atrioventricular septal defects, 242 European ancestry cases with normal hearts	NA	13q31.1	NR	rs1497062-?	NR	5E-6		1.946	[1.46-2.59]	Affymetrix [606195]	N
1215	chr13	82692287	82692288	rs9601838	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	13q31.1	NR	rs9601838-T	0.0673	7E-6		0.0323	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1216	chr13	82716162	82716163	rs1475622	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	13q31.1	intergenic	rs1475622-C		6E-6		221.18	[125.49-316.87] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
1216	chr13	82722728	82722729	rs75250417	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q31.1	NR	rs75250417-?	NR	3E-8				Illumina [7760689] (imputed)	N
1216	chr13	82769793	82769794	rs535587181	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	13q31.1	PTMAP5	rs535587181-T	0.0023	8E-6		0.4615	[0.26-0.66] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1216	chr13	82792991	82792992	rs6563275	31791255	Vicente M	2019-12-02	BMC Genomics	Population history and genetic adaptation of the Fulani nomads: inferences from genome-wide data and the lactase persistence trait.	Lactose tolerance test	53 Fulani individuals, 7 Czech or Slovak individuals	NA	13q31.1	SPRY2	rs6563275-?	NR	1E-6				Illumina [2359821]	N
1217	chr13	82920245	82920246	rs549976111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	13q31.1	GYG1P2	rs549976111-T	0.0012	2E-6		2.209	[1.31-3.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1218	chr13	82969479	82969480	rs150369165	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q31.1	Intergenic	rs150369165-G	0.995	3E-6	(AA)	0.187	unit increase	Illumina [NR] (imputed)	N
1219	chr13	83211754	83211755	rs141121969	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs141121969-G	0.01045	9E-9	(CALD1)	0.1101	NR unit increase	Illumina [1671387] (imputed)	N
1220	chr13	83321641	83321642	rs113787062	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs113787062-?	NR	5E-10		3720.9768	NR unit decrease	Illumina [2379855]	N
1221	chr13	83407023	83407024	rs9575182	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q31.1	intergenic	rs9575182-?	NR	6E-6		0.148	[0.066-0.23] unit decrease	Illumina [at least 13000000] (imputed)	N
1222	chr13	83537532	83537533	rs976078	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (maternal genetic effects)	588 European ancestry complete and incomplete trios	NA	13q31.1	GYG1P2, RNU6-67P	rs976078-?	NR	4E-7				Illumina [NR]	N
1222	chr13	83542404	83542405	rs75272374	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs75272374-G	0.0122	2E-9	(ORM1)	0.8998	NR unit increase	Illumina [1671387] (imputed)	N
1223	chr13	83746950	83746951	rs9546312	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q31.1	Intergenic	rs9546312-T	NR	9E-7	(between families)	4.92	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1224	chr13	83790799	83790800	rs112259525	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs112259525-?	NR	4E-9		3411.1746	NR unit decrease	Illumina [2379855]	N
1224	chr13	83796079	83796080	rs35227913	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	13q31.1	RP11-464I4.1	rs35227913-A	0.952	8E-6		0.0948	[0.053-0.136] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1226	chr13	84069169	84069170	rs17076837	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	13q31.1	SLITRK1	rs17076837-?		2E-6		0.578	[NR] unit increase	Illumina [6030476] (imputed)	N
1226	chr13	84094164	84094165	rs112852416	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs112852416-?	NR	3E-9		3091.535	NR unit decrease	Illumina [2379855]	N
1226	chr13	84130231	84130232	rs6563353	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	13q31.1	intergenic	rs6563353-A	0.177	2E-6	(EA + AA - GSE)			Affymetrix [421789]	N
1226	chr13	84131395	84131396	rs34073438	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	13q31.1	SLITRK1	rs34073438-A	0.21	5E-6	(Left HG thickness)	0.0401	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1226	chr13	84132585	84132586	rs7323076	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs7323076-?	NR	5E-8				Affymetrix [NR]	N
1227	chr13	84244872	84244873	rs9531483	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	13q31.1	SLITRK1	rs9531483-A	0.31	4E-6		0.06	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
1227	chr13	84254971	84254972	rs575795888	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	13q31.1	NR	rs575795888-?	NR	2E-6		0.537948	[0.31-0.76] unit increase	NR [13958389] (imputed)	N
1227	chr13	84258580	84258581	rs7492237	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	13q31.1	NONE, SLITRK1	rs7492237-C	NR	7E-7		4.962	NR z score increase	Illumina [7839440] (imputed)	N
1228	chr13	84281062	84281063	rs9602270	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q31.1	NONE, SLITRK1	rs9602270-T	0.048608633	3E-7		1.2693835	[1.158336115-1.391076925]	Illumina [10439017] (imputed)	N
1228	chr13	84372483	84372484	rs116885980	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	13q31.1	SLITRK1	rs116885980-T	0.9438	2E-6	(Subset)	0.224	[0.13-0.32] unit increase	Illumina [up to 38043574] (imputed)	N
1228	chr13	84379118	84379119	rs9593831	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q31.1	intergenic	rs9593831-T	NR	7E-6		1.55	[1.28-1.87]	NR [7738399] (imputed)	N
1229	chr13	84435346	84435347	rs17077369	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q31.1	intergenic	rs17077369-G	NR	3E-6		1.63	[1.33-2.00]	NR [7738399] (imputed)	N
1229	chr13	84438087	84438088	rs80208670	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	13q31.1	SLITRK1	rs80208670-C	0.0124	2E-7		4.6904316		Illumina [7559010] (imputed)	N
1230	chr13	84559496	84559497	rs10450860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.1	Intergenic	rs10450860-A	0.2043	2E-8	(MTAG)	0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1231	chr13	84695186	84695187	rs12583722	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	13q31.1		rs12583722-?	NR	1E-6				Illumina [7401356] (imputed)	N
1231	chr13	84727523	84727524	rs2809154	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	13q31.1	NR	rs2809154-C		4E-6		0.1786	[0.1-0.25] SD units increase	NR [10700000] (imputed)	N
1231	chr13	84768269	84768271	rs71699285	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	13q31.1	intergenic	rs71699285-D	0.3153	9E-6		0.0295	[0.017-0.042] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1232	chr13	84842057	84842058	rs181673553	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Niacinamide levels	1,937 individuals	NA	13q31.1	intergenic	rs181673553-A	0.998	3E-7		3.0048	[1.86-4.15] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1232	chr13	84870636	84870637	rs79598670	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs79598670-?	NR	4E-6		10667.332	unit decrease	Illumina [2379855]	N
1233	chr13	84995406	84995407	rs61960346	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		13q31.1	LINC00333	rs61960346-?	NR	5E-8	(AA)	0.162	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1233	chr13	85032326	85032327	rs17371334	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	13q31.1	SLITRK1	rs17371334-?	NR	2E-6	(Cyclothymic)	1.05	[NR] unit decrease	Affymetrix [703012]	N
1233	chr13	85054265	85054266	rs9546711	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Coronary heart disease	260 African American cases, 5,053 African American controls	621 African American cases, 1,629 African American controls	13q31.1	intergenic	rs9546711-A	0.42	2E-6		1.66	[1.35-2.04]	Affymetrix [~ 2740000] (imputed)	N
1233	chr13	85059599	85059600	rs1900362	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	13q31.1		rs1900362-G	0.339	1E-6		0.102358	[0.061-0.144] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
1234	chr13	85078527	85078528	rs4397989	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	13q31.1	Intergenic	rs4397989-?		3E-6		1.3208295	[NR]	Affymetrix [492217] (imputed)	N
1234	chr13	85178875	85178876	rs191650849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	13q31.1		rs191650849-C	NR	3E-8		0.3875	[0.25-0.52] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1235	chr13	85251711	85251712	rs9319064	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.1	LOC387939	rs9319064-A	0.0060	3E-6	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
1235	chr13	85257934	85257935	rs9546806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q31.1	NR	rs9546806-T	0.61120670771832	2E-8		0.0053221276	[0.0035-0.0072] unit increase	NR [NR]	N
1235	chr13	85257934	85257935	rs9546806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q31.1	NR	rs9546806-T	0.61120670771832	2E-8		0.0064963154	[0.0042-0.0088] unit increase	NR [NR]	N
1235	chr13	85257934	85257935	rs9546806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q31.1	NR	rs9546806-T	0.61120670771832	2E-8		0.008464913	[0.0055-0.0114] unit increase	NR [NR]	N
1235	chr13	85257934	85257935	rs9546806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q31.1	NR	rs9546806-T	0.61120670771832	3E-8		0.00690125	[0.0045-0.0094] unit increase	NR [NR]	N
1235	chr13	85257934	85257935	rs9546806	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q31.1	NR	rs9546806-T	0.61120670771832	2E-8		0.0054039806	[0.0035-0.0073] unit increase	NR [NR]	N
1235	chr13	85293111	85293112	rs11617058	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q31.1	LINC00333	rs11617058-?	NR	3E-11		0.018343437	[0.013-0.024] unit increase	NR [7306098]	N
1235	chr13	85293111	85293112	rs11617058	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q31.1	NR	rs11617058-T	NR	1E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1235	chr13	85294880	85294881	rs11149313	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q31.1	NR	rs11149313-A	0.7297	2E-9		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1235	chr13	85316141	85316142	rs78151815	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs78151815-C	0.01568	1E-8	(SH3BGRL3)	0.01723	NR unit increase	Illumina [1671387] (imputed)	N
1236	chr13	85329153	85329154	rs3013648	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	13q31.1	Intergenic	rs3013648-?	NR	9E-6				Illumina [9650000] (imputed)	N
1236	chr13	85391072	85391073	rs12018439	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	13q31.1	LINC00333	rs12018439-G	0.63	2E-6		1.3333333		Affymetrix [at least 730985] (imputed)	N
1236	chr13	85421524	85421525	rs55997566	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q31.1	NR	rs55997566-?	NR	4E-6		10667.031	NR unit decrease	Illumina [2379855]	N
1237	chr13	85487186	85487187	rs112313783	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs112313783-T	0.01394	2E-8	(CTH)	0.8024	NR unit increase	Illumina [1671387] (imputed)	N
1237	chr13	85549735	85549736	rs9531686	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	13q31.1	intergenic	rs9531686-T	0.571	9E-6		0.038	[0.022-0.054] unit decrease	Illumina [6150213] (imputed)	N
1237	chr13	85567748	85567749	rs9531697	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	13q31.1	NR	rs9531697-?	NR	5E-6		0.113007	[0.064-0.162] unit increase	NR [13958389] (imputed)	N
1237	chr13	85573495	85573496	rs9547035	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q31.1	NA	rs9547035-?		7E-32				Affymetrix, Illumina [NR] (imputed)	N
1237	chr13	85573495	85573496	rs9547035	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q31.1	LINC00333, LINC00351	rs9547035-T	0.716	1E-8		5.687	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1238	chr13	85607847	85607848	rs12853508	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q31.1	NR	rs12853508-G		1E-11		0.09	[0.07-0.11] unit increase	NR [NR]	N
1238	chr13	85665878	85665879	rs17079247	23326512	Greenwood TA	2013-01-10	PLoS One	Genome-wide association study of irritable vs. elated mania suggests genetic differences between clinical subtypes of bipolar disorder.	Bipolar disorder (mania)	117 European ancestry Irritable mania cases, 843 European ancestry Elated mania cases, 1033 European ancestry controls	121 European ancestry Irritable maniacases, 1026 European ancestry Elated mania cases	13q31.1	SLITRK1, SLITRK6	rs17079247-T	NR	8E-6	(IM vs. EM)	1.75		Affymetrix [703012]	N
1238	chr13	85703648	85703649	rs10161821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.1	Intergenic	rs10161821-C	0.1912	3E-9	(MTAG)	0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1239	chr13	85726582	85726583	rs8001810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q31.1	Intergenic	rs8001810-C	0.1303	3E-9	(MTAG)	0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1239	chr13	85845179	85845180	rs2497414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q31.1	Intergenic	rs2497414-A	0.791	6E-9	(MTAG)	0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1239	chr13	85845179	85845180	rs2497414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q31.1	Intergenic	rs2497414-A	0.7937	6E-9	(MTAG)	0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1239	chr13	85848000	85848001	rs2497410	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.1	SLITRK1	rs2497410-?	NR	9E-6	(SM 22:0)	0.156776	[0.088-0.226] unit increase	Affymetrix [at least 2500000] (imputed)	N
1240	chr13	85865450	85865451	rs74656822	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs74656822-C	0.0122	1E-9	(MAP4)	0.0236	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr13	85868677	85868678	rs77832761	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs77832761-A	0.01742	9E-16	(TPM4)	0.1483	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr13	85868677	85868678	rs77832761	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q31.1	NR	rs77832761-A	0.01742	5E-12	(MAP4)	0.02048	NR unit increase	Illumina [1671387] (imputed)	N
1240	chr13	85909887	85909887	rs369063511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q31.1		rs369063511-GT	NR	6E-12		0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1240	chr13	85918103	85918104	rs7985381	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q31.1	NR	rs7985381-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1240	chr13	85926036	85926037	rs2183749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	13q31.1		rs2183749-C	NR	3E-9		0.0896	[0.06-0.119] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
1240	chr13	85936250	85936251	rs7337175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.1		rs7337175-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1241	chr13	86104088	86104089	rs4482178	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	13q31.1	SLITRK1	rs4482178-?		2E-7				Illumina [859311]	N
1242	chr13	86178103	86178104	rs9594037	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs9594037-?	NR	4E-94				Affymetrix [NR]	N
1242	chr13	86238349	86238350	rs2039659	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	13q31.1	NR	rs2039659-A	0.54	8E-6	(AA)	0.08	[0.045-0.115] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1243	chr13	86322245	86322246	rs672187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs672187-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1243	chr13	86362902	86362903	rs674833	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	13q31.1	NR	rs674833-G	0.77388	5E-10		0.0148661	[0.01-0.02] unit increase	NR [NR]	N
1244	chr13	86386111	86386112	rs34832729	32998964	Trendowski MR	2020-09-30	Clin Cancer Res	Clinical and Genome-Wide Analysis of Multiple Severe Cisplatin-Induced Neurotoxicities in Adult-Onset Cancer Survivors.	Multiple severe cisplatin-induced neurotixicitiies in testicular cancer survivors	104 European ancestry cases, 196 European ancestry controls	NA	13q31.1	NR	rs34832729-G		1E-6		5.554	[NR]	Illumina [5385324] (imputed)	N
1244	chr13	86408520	86408521	rs10220124	31269844	Wu NN	2019-07-03	J Matern Fetal Neonatal Med	A genome-wide association study of gestational diabetes mellitus in Chinese women.	Diabetes (gestational)	103 Han Chinese ancestry cases, 115 Han Chinese ancestry controls		13q31.1	intergenic	rs10220124-A	0.008696	3E-6		14.65	[NR]	Illumina [65535]	N
1244	chr13	86417639	86417640	rs9547398	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	13q31.1	SLITRK6	rs9547398-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1244	chr13	86477071	86477072	rs116394958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q31.1		rs116394958-T	NR	6E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1244	chr13	86484024	86484025	rs61969510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs61969510-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1244	chr13	86484024	86484025	rs61969510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q31.1		rs61969510-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1244	chr13	86484024	86484025	rs61969510	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q31.1	NR	rs61969510-?	NR	8E-7	(female)	0.19066	[0.11-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1244	chr13	86484024	86484025	rs61969510	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q31.1	NR	rs61969510-?	NR	2E-9		0.14189	[0.095-0.188] unit increase	Affymetrix [7794483] (imputed)	N
1244	chr13	86490589	86490590	rs112108364	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	13q31.1	NR	rs112108364-G	0.2827	3E-10		0.017346134	[0.012-0.023] unit increase	Affymetrix [10549349] (imputed)	N
1244	chr13	86494666	86494667	rs61971082	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q31.1	SLITRK6	rs61971082-T	0.716165	3E-11		0.0101252	[0.0071-0.0131] unit decrease	Affymetrix [12370749]	N
1244	chr13	86494816	86494817	rs77432547	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q31.1	NA	rs77432547-A	0.7229	1E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1244	chr13	86494816	86494817	rs77432547	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q31.1	NA	rs77432547-A	0.7229	1E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1244	chr13	86504576	86504577	rs9547443	29217827	Sanders AR	2017-12-07	Sci Rep	Genome-Wide Association Study of Male Sexual Orientation.	Male sexual orientation	1,077 European ancestry homosexual men, 1,231 European ancestry heterosexual men	NA	13q31.1	SLITRK6, SLITRK5	rs9547443-C	0.719	8E-7		0.371	[0.22-0.52] unit increase	Affymetrix [5642880] (imputed)	N
1244	chr13	86504714	86504715	rs75644638	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	13q31.1	intergenic	rs75644638-?	NR	4E-6				Illumina [1539908]	N
1245	chr13	86511729	86511730	rs56858768	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	13q31.1	NR	rs56858768-?		3E-10		0.0148792	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1245	chr13	86585123	86585124	rs148386411	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	13q31.1	NR	rs148386411-C		6E-6		0.4564	[0.26-0.65] SD units decrease	NR [10700000] (imputed)	N
1245	chr13	86605527	86605528	rs9602955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs9602955-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1246	chr13	86661431	86661432	rs7986705	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.1	NR	rs7986705-?	NR	4E-7				Affymetrix [NR]	N
1246	chr13	86690526	86690527	rs7984869	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	13q31.1	intergenic	rs7984869-T	NR	3E-6		0.115	[0.066-0.164] unit increase	Illumina [628922]	N
1246	chr13	86692806	86692807	rs9531917	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.1	NR	rs9531917-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1246	chr13	86708778	86708779	rs12428625	29379196	Fadista J	2018-01-29	Eur J Hum Genet	Genome-wide association study of Hirschsprung disease detects a novel low-frequency variant at the RET locus.	Hirschsprung disease	170 Danish ancestry cases, 4717 Danish ancestry controls	416 European ancestry cases, 903 European ancestry controls	13q31.1	NR	rs12428625-T	0.01	4E-11		3.63	[NR]	Illumina [6162479] (imputed)	N
1248	chr13	86997483	86997484	rs9524720	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	13q31.1		rs9524720-T	NR	6E-6		0.57535	[0.33-0.82] unit increase	Illumina [NR] (imputed)	N
1250	chr13	87163120	87163121	rs74848444	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q31.1	intergenic	rs74848444-A	0.0125943792453115	4E-6	(G_Ruminococcus_HB)	1.42031	[0.82-2.02] unit decrease	Illumina [7711310] (imputed)	N
1250	chr13	87242856	87242857	rs4773460	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	13q31.1	intergenic	rs4773460-?	NR	2E-6				Illumina [516645]	N
1251	chr13	87402272	87402273	rs189868233	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	13q31.1	TXNL1P1	rs189868233-T	0.0018	5E-6		0.7553	[0.43-1.08] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1253	chr13	87651257	87651258	rs139073054	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	13q31.1	intergenic	rs139073054-T	NR	2E-6	(females)	0.35	[0.21-0.49] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1253	chr13	87675071	87675072	rs9589866	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	13q31.1	LOC100130117, hCG_1795283	rs9589866-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1255	chr13	87860051	87860052	rs913970	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q31.2	intergenic	rs913970-?	NR	6E-6		0.221	[0.13-0.32] unit increase	Illumina [at least 13000000] (imputed)	N
1255	chr13	87927122	87927123	rs72636490	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	13q31.2	MIR4500HG	rs72636490-A	0.08	9E-6		0.21	[0.11-0.31] unit decrease	Illumina [14638245] (imputed)	N
1256	chr13	87994035	87994036	rs369240153	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	13q31.2	SLITRK6	rs369240153-T	NR	7E-6		0.4	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
1256	chr13	87994035	87994036	rs369240153	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	13q31.2	SLITRK6	rs369240153-T	NR	3E-7				Affymetrix, Illumina [12061510] (imputed)	N
1257	chr13	88150883	88150884	rs7332726	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	13q31.2	intergenic	rs7332726-A	NR	7E-6		0.5565	[0.31-0.8] unit increase	Illumina [9290362] (imputed)	N
1259	chr13	88346616	88346617	rs117798068	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Varicose veins	2,483 European ancestry cases, 54,154 European ancestry controls	NA	13q31.2		rs117798068-C	0.0113555	2E-8		2.03		Affymetrix [15348957] (imputed)	N
1259	chr13	88439820	88439821	rs4482135	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	13q31.2	Intergenic	rs4482135-A	NR	1E-6	(adjusted for total body fat)	0.246	[0.15-0.35] unit decrease	Illumina [8511049] (imputed)	N
1260	chr13	88539102	88539103	rs12858850	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	13q31.2		rs12858850-?	NR	7E-6		0.782456	[0.68-0.89]	NR [674885]	N
1261	chr13	88704705	88704706	rs7323893	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	13q31.2	intergenic	rs7323893-T	0.91	1E-7		0.136	[0.086-0.186] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1262	chr13	88762345	88762346	rs969962	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q31.2	AL354896.16	rs969962-?	0.1398	9E-6	(PAL8)			Illumina [475971]	N
1262	chr13	88789200	88789201	rs138788250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q31.2	NR	rs138788250-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1262	chr13	88838029	88838030	rs9586881	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	13q31.2	intergenic	rs9586881-?	NR	4E-6		1.06833	[1.038647-1.098862]	Illumina [at least 4756722] (imputed)	N
1262	chr13	88838029	88838030	rs9586881	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	13q31.2	intergenic	rs9586881-?	NR	5E-6		1.067919	[1.038363-1.098317]	Illumina [at least 4756722] (imputed)	N
1263	chr13	88930652	88930653	rs72632563	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	13q31.2	RPL29P29	rs72632563-?	NR	8E-6		0.187	[0.11-0.27] unit increase	Illumina [6319684] (imputed)	N
1264	chr13	89015932	89015933	rs1335485	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q31.2	NR	rs1335485-?	NR	4E-6		0.0080051	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1264	chr13	89016991	89016992	rs9520384	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q31.2	RPL29P29	rs9520384-A	NR	6E-9		5.828	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1264	chr13	89109234	89109235	rs113855621	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	13q31.2	NR	rs113855621-?	NR	2E-6		0.0754	[0.045-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
1264	chr13	89128438	89128439	rs338767	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	13q31.2	intergenic	rs338767-A	0.1179	2E-6		1.15673	NR	Affymetrix, Illumina [30341632] (imputed)	N
1265	chr13	89229110	89229111	rs1577146	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	13q31.2	LINC00433	rs1577146-T	0.5633	3E-6		0.0072	[0.0043-0.0101] unit increase	Affymetrix [~ 7740000] (imputed)	N
1265	chr13	89234114	89234115	rs9521405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q31.2	Intergenic	rs9521405-A	0.3615	3E-12	(MTAG)	0.013	[0.0093-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1265	chr13	89234114	89234115	rs9521405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q31.2	Intergenic	rs9521405-A	0.3615	3E-11		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1265	chr13	89234114	89234115	rs9521405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.2	Intergenic	rs9521405-A	0.3611	1E-12	(MTAG)	0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1265	chr13	89234114	89234115	rs9521405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q31.2	Intergenic	rs9521405-A	0.3611	2E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1266	chr13	89275534	89275535	rs111623082	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q31.2	NR	rs111623082-?	NR	2E-8				Illumina [7760689] (imputed)	N
1266	chr13	89300155	89300156	rs4517639	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q31.2	intergenic	rs4517639-C	NR	2E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1266	chr13	89348356	89348357	rs142163225	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q31.2	NR	rs142163225-?	NR	3E-10				Illumina [7760689] (imputed)	N
1266	chr13	89380342	89380343	rs117619959	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	13q31.2	LINC00560	rs117619959-T	0.0168	4E-6		0.1318	[0.076-0.188] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1267	chr13	89420083	89420084	rs9515411	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	13q31.2	intergenic	rs9515411-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
1270	chr13	89894119	89894120	rs405795	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	13q31.2	NR	rs405795-?	NR	5E-6		0.1146	[0.065-0.164] unit increase	Illumina [at least 560000] (imputed)	N
1270	chr13	89911703	89911704	rs314580	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	13q31.2	NR	rs314580-G	0.04	8E-6		2.41	[NR]	Affymetrix [703012]	N
1271	chr13	90014488	90014489	rs7995618	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	13q31.2	LOC160824	rs7995618-?		4E-6				Illumina [5970354] (imputed)	N
1272	chr13	90077355	90077356	rs16942927	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q31.3	NR	rs16942927-?	NR	3E-39				Affymetrix [NR]	N
1273	chr13	90188021	90188022	rs9555910	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	13q31.3		rs9555910-?	NR	2E-8				Affymetrix [11524071] (imputed)	N
1274	chr13	90361715	90361716	rs9560417	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	13q31.3	MIR622, SLITRK5	rs9560417-?	0.04503	4E-11		4.611	[4.12-5.1]	Affymetrix [547296]	N
1274	chr13	90395287	90395288	rs76134593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q31.3		rs76134593-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1274	chr13	90409090	90409091	rs4773505	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	13q31.3	LINC00353, LINC00559	rs4773505-?	NR	7E-6	(EA)			Illumina [7205781] (imputed)	N
1274	chr13	90409397	90409398	rs317962	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	13q31.3	LINC00353, LINC00559	rs317962-?	NR	6E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1275	chr13	90465112	90465113	rs142574980	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	13q31.3	NR	rs142574980-G		9E-6		0.2521	[0.14-0.36] SD units decrease	NR [10700000] (imputed)	N
1275	chr13	90486791	90486792	rs61961310	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	13q31.3	NR	rs61961310-G	0.9648	6E-6		0.3139	[0.18-0.45] unit increase	Illumina [8348463] (imputed)	N
1275	chr13	90505139	90505140	rs9515642	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q31.3	NR	rs9515642-?	NR	5E-8				Illumina [7760689] (imputed)	N
1275	chr13	90513817	90513818	rs9588787	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	13q31.3	NR	rs9588787-C	0.421316	2E-6		0.086	[0.051-0.121] unit decrease	NR [9260588] (imputed)	N
1275	chr13	90520477	90520478	rs143699509	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q31.3	NR	rs143699509-?	NR	3E-8				Illumina [7760689] (imputed)	N
1276	chr13	90622454	90622455	rs2882281	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q31.3	RP11-388D4.1	rs2882281-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1277	chr13	90798215	90798216	rs117755565	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	13q31.3	NR	rs117755565-A	NR	9E-6	(male)	0.416	[0.23-0.6] unit decrease	Illumina [11133794] (imputed)	N
1278	chr13	90906741	90906742	rs4537874	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.3	SLITRK5	rs4537874-?	NR	9E-6	(LPE 22:6)	0.5122727	[0.29-0.74] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1279	chr13	91057758	91057759	rs80092143	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait rhythm	2,946 individuals	NA	13q31.3	MIR622	rs80092143-C	0.89	7E-7	(Single support time)	0.0065	[0.004-0.009] unit decrease	Illumina [6200000] (imputed)	N
1280	chr13	91182555	91182556	rs77681628	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q31.3		rs77681628-C	NR	3E-7		5.144079	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr13	91498798	91498799	rs75900232	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	13q31.3	Intergenic	rs75900232-G		7E-7	(men)	0.307	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr13	91532239	91532240	rs368674043	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	13q31.3	NR	rs368674043-?	NR	3E-6		0.11862522	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1283	chr13	91536433	91536439	rs140884924	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	13q31.3		rs140884924-?	NR	8E-6	(lmp)	1.76		Illumina [11595112] (imputed)	N
1283	chr13	91559811	91559812	rs1031396	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	13q31.3	LINC00410	rs1031396-T	NR	5E-6		0.4	[0.22-0.58] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1283	chr13	91615837	91615838	rs7326331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.3	Intergenic	rs7326331-A	0.2694	1E-14	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr13	91615837	91615838	rs7326331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q31.3		rs7326331-A	0.2761	3E-16		0.0128	[0.0097-0.0159] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1283	chr13	91615837	91615838	rs7326331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q31.3	Intergenic	rs7326331-A	0.2761	7E-17	(MTAG)	0.0122	[0.0093-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1283	chr13	91619228	91619229	rs17667497	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	13q31.3	NR	rs17667497-T	0.6231	7E-6		0.0619	[0.035-0.089] unit decrease	Illumina [up to 1980188] (imputed)	N
1284	chr13	91629271	91629272	rs7332724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q31.3		rs7332724-T	0.2767	8E-15	(conditional-joint)	0.0122	[0.0091-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1284	chr13	91645252	91645253	rs9284262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q31.3	Intergenic	rs9284262-A	0.2016	8E-11	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1284	chr13	91645252	91645253	rs9284262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q31.3	Intergenic	rs9284262-G	0.7984	6E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1284	chr13	91679473	91679474	rs6492519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q31.3	Intergenic	rs6492519-A	0.7574	6E-10	(MTAG)	0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1284	chr13	91710986	91710987	rs9560748	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q31.3	NR	rs9560748-?	NR	4E-6		4.601	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1284	chr13	91732769	91732770	rs61970269	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	13q31.3	intergenic	rs61970269-T	NR	3E-6		0.2234	unit increase	Illumina [5767231] (imputed)	N
1284	chr13	91734982	91734983	rs10492554	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q31.3	NR	rs10492554-?		9E-6				Illumina [4322238] (imputed)	N
1284	chr13	91749955	91749956	rs7992120	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q31.3	GPC5	rs7992120-?	NR	5E-6	(indoxyl sulfate)	0.4080859	[0.23-0.58] unit increase	Affymetrix [at least 2500000] (imputed)	N
1285	chr13	91755198	91755199	rs16945184	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident coronary heart disease	2406 European ancestry cases, 21,618 European ancestry controls	3059 European ancestry cases, 28,087 European ancestry controls	13q31.3	GPC5	rs16945184-C	NR	6E-6		1.2048193	[1.11-1.3]	Affymetrix, Illumina [2543842] (imputed)	N
1285	chr13	91797550	91797551	rs287527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.3		rs287527-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1285	chr13	91836743	91836744	rs287532	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	13q31.3	NR	rs287532-A		6E-6				Illumina [458525]	N
1286	chr13	91899979	91899980	rs117333740	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Cyanobacteria abundance in stool	5,959 Finnish ancestry individuals	NA	13q31.3		rs117333740-G	0.0203444	3E-8		0.103208	[0.067-0.14] unit increase	Illumina [7980478] (imputed)	N
1286	chr13	91902023	91902024	rs138138565	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	13q31.3	NR	rs138138565-?	NR	4E-6		0.324718	[0.19-0.46] unit increase	NR [13958389] (imputed)	N
1286	chr13	91939269	91939270	rs9583907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q31.3		rs9583907-T	0.180182879	6E-11		0.078556515	[0.055-0.102] unit decrease	Illumina [13429769] (imputed)	N
1286	chr13	91940168	91940169	rs7985179	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	13q31.3	MIR17HG	rs7985179-T	0.82	4E-7		1.06	1.04-1.09	Illumina [12557761] (imputed)	N
1286	chr13	91940168	91940169	rs7985179	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q31.3	MIR17HG	rs7985179-T	0.72	4E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1286	chr13	91940168	91940169	rs7985179	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	13q31.3	MIR17HG	rs7985179-A	0.2783	6E-7	(EA)	0.089	[0.054-0.124] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1286	chr13	91942918	91942919	rs34165267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q31.3		rs34165267-T	NR	3E-8		0.0511	[0.033-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1286	chr13	91949561	91949562	rs9515905	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q31.3	NR	rs9515905-G	0.2606	2E-27		0.0472	[0.039-0.056] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1286	chr13	91949561	91949562	rs9515905	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	13q31.3	MIR17HG	rs9515905-A	0.831	7E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1286	chr13	91950180	91950181	rs72640313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	13q31.3		rs72640313-A	NR	7E-11		0.0615	[0.043-0.08] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1286	chr13	91960885	91960886	rs12873378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q31.3	Intergenic	rs12873378-T	0.7061	2E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1286	chr13	91963079	91963080	rs1475655	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q31.3	NR	rs1475655-T	0.2527	2E-16		0.0436	[0.033-0.054] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1286	chr13	91984401	91984402	rs55783125	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		13q31.3	intergenic	rs55783125-A	0.093	7E-6		0.603	[0.34-0.86] unit decrease	Illumina [640625] (imputed)	N
1286	chr13	91984401	91984402	rs55783125	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		13q31.3	intergenic	rs55783125-A	0.0931893	3E-6		0.629335	[0.37-0.89] unit decrease	Illumina [640625] (imputed)	N
1286	chr13	91985970	91985971	rs7327945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q31.3		rs7327945-C	NR	3E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1286	chr13	91985970	91985971	rs7327945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q31.3		rs7327945-C	0.678119	1E-18		0.0192217	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
1286	chr13	91985970	91985971	rs7327945	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q31.3	LINC00379, MIR17HG	rs7327945-?	NR	2E-20		0.028661119	[0.023-0.035] unit decrease	Illumina [27896057] (imputed)	N
1286	chr13	91987064	91987065	rs11843816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q31.3	NR	rs11843816-C	0.965111	3E-8		0.0133466	[0.0088-0.0179] unit increase	Affymetrix [16582909] (imputed)	N
1286	chr13	91987064	91987065	rs11843816	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q31.3	NR	rs11843816-C	0.965111	1E-5		0.0122143	[0.0072-0.0173] unit increase	Affymetrix [16582965] (imputed)	N
1286	chr13	91990798	91990799	rs7324952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q31.3		rs7324952-T	0.117125	6E-10		0.021424975	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr13	91991742	91991743	rs7995591	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q31.3	NR	rs7995591-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1286	chr13	91991742	91991743	rs7995591	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q31.3	NR	rs7995591-G	0.772	2E-8		0.00728372	[0.0048-0.0098] unit decrease	NR [9732723] (imputed)	N
1286	chr13	91991744	91991745	rs7995597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q31.3	MIR17HG	rs7995597-A	NR	2E-8		0.0176941	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
1286	chr13	91993626	91993627	rs76115890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q31.3	NR	rs76115890-C	0.12887	3E-12				Affymetrix, Illumina [23467995] (imputed)	N
1286	chr13	91993745	91993746	rs6492538	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	13q31.3	intergenic	rs6492538-A	0.216629	4E-6		0.01009	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1286	chr13	91993745	91993746	rs6492538	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	13q31.3	intergenic	rs6492538-A	0.216629	1E-11	(females)	0.02105	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1286	chr13	91993745	91993746	rs6492538	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	13q31.3	intergenic	rs6492538-A	0.216629	5E-10	(females)	0.01912	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1286	chr13	91993745	91993746	rs6492538	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q31.3	Intergenic	rs6492538-A	0.2239	6E-10	(MTAG)	0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1286	chr13	92000025	92000026	rs138151712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q31.3	MIR17HG	rs138151712-C	0.031033	3E-9		0.037846442	[0.025-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr13	92005133	92005134	rs111371822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q31.3	MIR17HG	rs111371822-G	0.116925	5E-17		0.02911568	[0.022-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr13	92009192	92009193	rs60699901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q31.3	NR	rs60699901-C	0.118119	2E-13		0.021517	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1287	chr13	92013943	92013944	rs9523312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q31.3	MIR17HG	rs9523312-G	NR	1E-9		0.0174854	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1287	chr13	92015976	92015977	rs8002779	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	13q31.3	GPC5	rs8002779-A	0.48	3E-6		0.05	[0.03-0.07] cm decrease	Illumina [420885]	N
1287	chr13	92018649	92018650	rs78084721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q31.3		rs78084721-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1287	chr13	92019154	92019155	rs8001781	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q31.3	NR	rs8001781-G	0.676	6E-19	(Glypican-5, GPC5.4991.12.1)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1287	chr13	92019616	92019617	rs1330062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q31.3		rs1330062-G	NR	6E-49		0.0192	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1287	chr13	92019616	92019617	rs1330062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	13q31.3	MIR17HG	rs1330062-C	NR	3E-8		0.0163292	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1287	chr13	92024327	92024328	rs9515919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q31.3	intergenic	rs9515919-A	0.3693	6E-16		0.0159	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1287	chr13	92024573	92024574	rs7319045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	13q31.3	MIR17HG	rs7319045-A	NR	5E-10		0.0198309	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1287	chr13	92024573	92024574	rs7319045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q31.3		rs7319045-?	NR	3E-63				NR [~ 8900000] (imputed)	N
1287	chr13	92024573	92024574	rs7319045	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	13q31.3	GPC5	rs7319045-A	0.47	1E-10		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1287	chr13	92024573	92024574	rs7319045	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	13q31.3	GPC5	rs7319045-A	0.392	8E-15		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1287	chr13	92024573	92024574	rs7319045	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	13q31.3	GPC5	rs7319045-A	0.4	1E-11		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1287	chr13	92025778	92025779	rs6492539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q31.3	Intergenic	rs6492539-T	0.1515	5E-11	(MTAG)	0.0211	[0.015-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr13	92025778	92025779	rs6492539	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	13q31.3	MIR17HG	rs6492539-?	NR	1E-8		5.699	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1287	chr13	92025778	92025779	rs6492539	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	13q31.3	MIR17HG	rs6492539-?	NR	1E-7		5.334	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1287	chr13	92027911	92027912	rs57684439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q31.3	NR	rs57684439-G	0.968732	1E-11		0.036821	[0.026-0.047] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1287	chr13	92028252	92028253	rs17556717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.3	Intergenic	rs17556717-A	0.9068	3E-14	(MTAG)	0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr13	92029240	92029241	rs9634624	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q31.3	GPC5	rs9634624-?	NR	3E-8		0.01409095	[0.0091-0.019] unit decrease	NR [7306098]	N
1287	chr13	92029240	92029241	rs9634624	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	13q31.3	GPC5	rs9634624-?	NR	2E-8		5.637	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1287	chr13	92044586	92044587	rs11620355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q31.3		rs11620355-A	0.0912	1E-13		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1287	chr13	92044586	92044587	rs11620355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q31.3	Intergenic	rs11620355-A	0.0912	7E-16	(MTAG)	0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1287	chr13	92058887	92058888	rs2147190	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q31.3	GPC5, AL138714.1	rs2147190-T	0.3363545	2E-13	(EA, Glypican-5)	0.3335	[0.25-0.42] unit increase	Affymetrix [509946]	N
1287	chr13	92069073	92069074	rs7328259	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	13q31.3	GPC5	rs7328259-G	0.401695714	8E-6		0.148599	[0.084-0.214] unit increase	Illumina [6952813] (imputed)	N
1287	chr13	92083634	92083635	rs118000667	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPC5	5,363 Icelandic ancestry individuals	NA	13q31.3		rs118000667-T	0.02838	2E-56		0.888561	[0.78-1] unit increase	Illumina [7506463] (imputed)	N
1288	chr13	92203812	92203813	rs16946160	21441931	Okamoto K	2011-03-27	Nat Genet	Common variation in GPC5 is associated with acquired nephrotic syndrome.	Nephrotic syndrome (acquired)	195 Japanese ancestry cases, 1,546 Japanese ancestry controls	662 Japanese ancestry cases, 4,919 Japanese ancestry controls	13q31.3	GPC5	rs16946160-A	0.17	3E-7		1.39	[1.22-1.57]	Perlegen [205203]	N
1288	chr13	92270676	92270677	rs68058549	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	13q31.3	NR	rs68058549-G	0.0421	3E-6		26.613	[26.2-27.03]	Illumina [10000612] (imputed)	N
1290	chr13	92417057	92417058	rs342706	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	13q31.3	NR	rs342706-?	NR	2E-17	(GPC5)			Illumina [~ 4000000] (imputed)	N
1290	chr13	92417057	92417058	rs342706	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q31.3	GPC5	rs342706-C	0.274323	1E-83	(Glypican-5)	0.8611	[0.78-0.94] unit decrease	Affymetrix [509946]	N
1290	chr13	92422945	92422946	rs342702	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q31.3	GPC5	rs342702-G	0.73953125	2E-218	(GPC5, 4991_12_1)	0.83343035	[0.79-0.88] unit increase	Illumina [> 1000000] (imputed)	N
1290	chr13	92422945	92422946	rs342702	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q31.3	GPC5	rs342702-T	0.274	5E-233	(Glypican-5, GPC5.4991.12.1)	0.8	[0.76-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
1290	chr13	92436875	92436876	rs574583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q31.3		rs574583-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1290	chr13	92444777	92444778	rs528366	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	13q31.3		rs528366-T	0.78	2E-8		0.03	[0.02-0.04] L decrease	Affymetrix [NR] (imputed)	N
1290	chr13	92445228	92445229	rs2352028	20304703	Li Y	2010-03-19	Lancet Oncol	Genetic variants and risk of lung cancer in never smokers: a genome-wide association study.	Lung cancer	364 European ancestry cases, 364 European ancestry controls, 13 cases, 13 controls	446 European ancestry cases, 853 European ancestry controls, 65 cases, 154 controls	13q31.3	GPC5	rs2352028-A	0.26	6E-6		1.46	[1.26-1.70]	Illumina [331918]	N
1290	chr13	92451882	92451883	rs1929922	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	13q31.3	GPC5	rs1929922-A	0.2542	1E-36	(GPC5)	0.77307	[0.65-0.89] unit decrease	Illumina [8683751] (imputed)	N
1290	chr13	92501663	92501664	rs7328464	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	GPC5	rs7328464-A	0.053	5E-6	(Sedentary activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1290	chr13	92501663	92501664	rs7328464	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	GPC5	rs7328464-A	0.053	4E-7	(Sedentary activity )	0.04	[NR] %awake time increase	Illumina [899892]	N
1291	chr13	92549423	92549424	rs9301758	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q31.3	NR	rs9301758-T	0.479	6E-6	(Males)	0.230623	[0.13-0.33] unit decrease	Illumina [~ 6600000] (imputed)	N
1291	chr13	92555285	92555285	rs3029748	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q31.3	NR	rs3029748-CTT	0.535	4E-6	(EA)	0.0298	[0.017-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
1291	chr13	92558143	92558144	rs545574692	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	13q31.3	GPC5	rs545574692-T	0.004	3E-6		0.4293	[0.25-0.61] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1291	chr13	92592554	92592555	rs7325116	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q31.3	GPC5	rs7325116-C	0.4171687	3E-15	(EA, Glypican-5)	0.3481	[0.26-0.43] unit decrease	Affymetrix [509946]	N
1291	chr13	92596701	92596702	rs116846463	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GPC5	rs116846463-?	NR	3E-13	(female)	2.55873	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1291	chr13	92637583	92637584	rs576308820	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q31.3	Intergenic	rs576308820-?		7E-6		3.41	[2.00-5.81]	Illumina [7645193] (imputed)	N
1292	chr13	92680457	92680458	rs138994828	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	13q31.3	GPC5	rs138994828-A	0.0736	1E-10	(GPC5)	0.80653	[0.56-1.05] unit decrease	Illumina [8683751] (imputed)	N
1293	chr13	92851967	92851968	rs4771854	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q31.3		rs4771854-C	0.19	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
1294	chr13	92945883	92945884	rs9516053	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	13q31.3	GPC5	rs9516053-C	NR	3E-9	(AA)			Illumina [8380626] (imputed)	N
1294	chr13	92945883	92945884	rs9516053	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	13q31.3	GPC5	rs9516053-C	NR	3E-6				Illumina [8380626] (imputed)	N
1294	chr13	92988322	92988323	rs7982677	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	13q31.3	GPC5	rs7982677-A	0.281	3E-9		1.288	[1.152-1.441]	Illumina [516131]	N
1295	chr13	93077982	93077983	rs7994769	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	13q31.3	NR	rs7994769-?		2E-6	(KITLG)	0.3134	[NR] unit decrease	Illumina [NR]	N
1295	chr13	93088650	93088651	rs4771859	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	13q31.3	GPC5	rs4771859-G	0.709	1E-6	(Recessive model)	1.328	[1.088-1.623]	Illumina [733202]	N
1295	chr13	93142361	93142362	rs722178	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	13q31.3	NR	rs722178-C		6E-6		0.126	[0.071-0.181] SD units decrease	NR [10700000] (imputed)	N
1295	chr13	93152457	93152458	rs974420	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		13q31.3	GPC5	rs974420-G	0.621	8E-6		0.013	[0.0071-0.0189] dioptres increase	NR [5900115] (imputed)	N
1296	chr13	93213475	93213476	rs1413191	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	13q31.3	GPC5	rs1413191-?	0.18	5E-6				Illumina [1212217]	N
1296	chr13	93323145	93323146	rs17267292	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	13q31.3	GPC5	rs17267292-?	0.28	1E-7	(Docosahexaonic acid)			Affymetrix [187454]	N
1297	chr13	93331221	93331222	rs9516120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q31.3	Intergenic	rs9516120-A	0.2054	4E-9	(MTAG)	0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1297	chr13	93331885	93331886	rs9523762	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	13q31.3	GPC5	rs9523762-?	0.35	1E-6		1.36	[NR]	Illumina [551642]	N
1297	chr13	93343807	93343808	rs12429761	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q31.3	NR	rs12429761-?	NR	8E-6		5.05	[3.87-6.59]	Illumina [539000] (imputed)	N
1297	chr13	93366176	93366177	rs4643170	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q31.3	Intergenic	rs4643170-A	0.543	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr13	93460721	93460722	rs9556218	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q31.3	NA	rs9556218-T		2E-8		0.0175007	[0.011-0.024] unit increase	Illumina [13288253] (imputed)	N
1298	chr13	93516619	93516620	rs9523817	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q31.3	GPC5	rs9523817-A	0.7239	3E-9		0.0112048	[0.0075-0.0149] unit decrease	Affymetrix [11880941] (imputed)	N
1298	chr13	93536280	93536281	rs143211586	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	13q31.3		rs143211586-A	0.989572	8E-6		0.0340123	[0.0091-0.0589] unit increase	Illumina [7666802] (imputed)	N
1298	chr13	93581790	93581791	rs9523848	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	13q31.3	GPC6	rs9523848-T	0.293	3E-6		0.081	[0.048-0.114] cup size decrease	Illumina [7422970] (imputed)	N
1299	chr13	93668067	93668068	rs149037841	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	13q31.3		rs149037841-A	0.9988	2E-8		0.8411	[0.55-1.14] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1300	chr13	93718007	93718008	rs696931	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	13q31.3	GPC5, GPC6	rs696931-T	0.189163	1E-5		0.025656	[0.015-0.037] unit decrease	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1300	chr13	93729284	93729285	rs9561252	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	13q31.3	GPC6, GPC5	rs9561252-?	NR	6E-7	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
1300	chr13	93729284	93729285	rs9561252	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	13q31.3	GPC6, GPC5	rs9561252-?	NR	2E-6	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1300	chr13	93816032	93816033	rs319534	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q31.3	NR	rs319534-G	0.153	8E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1300	chr13	93832878	93832879	rs319564	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q31.3	GPC6	rs319564-C	0.4567	8E-6	(men)	0.0218	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1300	chr13	93832878	93832879	rs319564	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q31.3	GPC6	rs319564-C	0.4499	2E-6	(EA, men)	0.0238	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1300	chr13	93832878	93832879	rs319564	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	13q31.3	GPC6	rs319564-T	0.5496	2E-8	(EA, men)	0.0274	[0.018-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1300	chr13	93843216	93843217	rs117920416	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	13q31.3	GPC6	rs117920416-A	0.024	3E-7		0.0173	[0.011-0.024] unit increase	Affymetrix [~ 7740000] (imputed)	N
1301	chr13	93853595	93853596	rs12583336	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q31.3	NR	rs12583336-?	NR	5E-6		1.85	[1.61-2.13]	Illumina [539000] (imputed)	N
1301	chr13	93859497	93859498	rs9516194	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q31.3	GPC5, GPC6	rs9516194-A	0.4901	4E-10		6.245	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1301	chr13	93879030	93879031	rs7985891	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	13q31.3	GPC6	rs7985891-?		2E-7	(EA)	38.2	[NR]	Illumina [936149]	N
1301	chr13	93896934	93896935	rs12430764	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q31.3	NA	rs12430764-A	0.5164	2E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1301	chr13	93896934	93896935	rs12430764	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	13q31.3	NR	rs12430764-A	0.5164	2E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1301	chr13	93898696	93898697	rs72635657	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q31.3		rs72635657-?	NR	4E-21		0.0825678	[0.065-0.1] unit increase	Affymetrix [20259828] (imputed)	N
1301	chr13	93898696	93898697	rs72635657	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q31.3	GPC6	rs72635657-G	0.986416	6E-9		0.0846319	[0.056-0.113] unit increase	NR [17166351] (imputed)	N
1301	chr13	93912784	93912785	rs1328371	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q31.3	GPC6	rs1328371-?		4E-23				Affymetrix, Illumina [NR] (imputed)	N
1301	chr13	93912989	93912990	rs1328369	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	13q31.3	NR	rs1328369-T	0.51	3E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix [2446094] (imputed)	N
1301	chr13	93912989	93912990	rs1328369	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	13q31.3	NR	rs1328369-T	0.51	5E-8				Affymetrix [2446094] (imputed)	N
1301	chr13	93938705	93938706	rs11839514	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q31.3	GPC6	rs11839514-G	0.34	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1301	chr13	93945857	93945858	rs143258881	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		13q31.3	GPC6	rs143258881-?	0.03	7E-8		0.29	unit decrease	Illumina [NR] (imputed)	N
1301	chr13	93975642	93975643	rs140305578	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	3,405 European ancestry mothers	NA	13q31.3	GPC6	rs140305578-G	NR	9E-7		0.404	[0.24-0.56] unit decrease	Illumina [7360988] (imputed)	N
1302	chr13	93978697	93978697	rs141012826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q31.3		rs141012826-?	NR	2E-12		0.022939	[0.017-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1302	chr13	94011168	94011169	rs9561329	20634892	Calboli FC	2010-07-09	PLoS One	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism (age interaction)	2,235 European ancestry individuals	NA	13q31.3	GPC6	rs9561329-?	0.09	1E-7		0.17	[0.11-0.23] unit decrease	Affymetrix [1705237] (imputed)	N
1302	chr13	94012099	94012100	rs2038726	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q31.3	GPC6	rs2038726-T	0.934863	8E-16		0.0302343	[0.023-0.038] unit decrease	NR [13737936] (imputed)	N
1302	chr13	94015804	94015805	rs34375635	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q31.3		rs34375635-?	NR	3E-18		0.0336496	[0.025-0.042] unit decrease	Affymetrix [20259828] (imputed)	N
1302	chr13	94017475	94017476	rs9561331	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q31.3	GPC6	rs9561331-G	0.869863	2E-14		0.0215024	[0.016-0.027] unit increase	NR [13737936] (imputed)	N
1302	chr13	94027892	94027893	rs1323971	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q31.3	NR	rs1323971-G		7E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1302	chr13	94041034	94041035	rs8001600	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q31.3	NR	rs8001600-C	0.346269094825123	5E-10		0.005999109	[0.0041-0.0079] unit increase	NR [NR]	N
1302	chr13	94041034	94041035	rs8001600	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q31.3	NR	rs8001600-C	0.346269094825123	6E-10		0.0074117207	[0.0051-0.0098] unit increase	NR [NR]	N
1302	chr13	94041034	94041035	rs8001600	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q31.3	NR	rs8001600-C	0.346269094825123	4E-10		0.009654392	[0.0066-0.0127] unit increase	NR [NR]	N
1302	chr13	94041034	94041035	rs8001600	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q31.3	NR	rs8001600-C	0.346269094825123	4E-10		0.00618345	[0.0042-0.0081] unit increase	NR [NR]	N
1302	chr13	94054089	94054090	rs2813608	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q31.3	NR	rs2813608-A	0.654509516567175	5E-9		0.0077176807	[0.0051-0.0103] unit decrease	NR [NR]	N
1302	chr13	94062094	94062095	rs1886205	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	13q31.3	GPC6	rs1886205-A	0.7604	6E-14		1.0307		Affymetrix [11880941] (imputed)	N
1302	chr13	94062094	94062095	rs1886205	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q31.3	GPC6	rs1886205-A	0.7604	6E-14		1.0297334		Affymetrix [11880941] (imputed)	N
1302	chr13	94066951	94066952	rs72640504	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q31.3	GPC6	rs72640504-T	0.991832	8E-35		0.114206	[0.096-0.132] unit increase	NR [13737936] (imputed)	N
1302	chr13	94066951	94066952	rs72640504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q31.3		rs72640504-?	NR	8E-31				NR [~ 8900000] (imputed)	N
1302	chr13	94066951	94066952	rs72640504	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q31.3		rs72640504-?	NR	4E-28		0.111914	[0.091-0.132] unit increase	Affymetrix [20259828] (imputed)	N
1302	chr13	94084180	94084181	rs143290532	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q31.3	GPC6	rs143290532-C	0.996002	6E-10		0.0907801	[0.062-0.119] unit decrease	NR [13737936] (imputed)	N
1302	chr13	94099216	94099217	rs4270038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	13q31.3		rs4270038-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1302	chr13	94102074	94102074	rs35104410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q31.3		rs35104410-CA	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1303	chr13	94111842	94111843	rs7337911	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q31.3		rs7337911-A	0.7471	1E-9		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1303	chr13	94159799	94159800	rs9516245	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	13q31.3	GPC6	rs9516245-?		4E-7	(model 2)	1.73	[1.39-2.15]	Illumina [29610185] (imputed)	N
1303	chr13	94208648	94208649	rs190494527	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	13q31.3	NR	rs190494527-G	0.102	7E-6		0.175	[0.099-0.251] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1303	chr13	94233128	94233129	rs7998314	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	GPC6	rs7998314-A	0.487	7E-7	(Energy storage )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1303	chr13	94233128	94233129	rs7998314	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	GPC6	rs7998314-A	0.487	4E-7	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1303	chr13	94233128	94233129	rs7998314	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q31.3	GPC6	rs7998314-A	0.487	4E-7	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
1304	chr13	94341095	94341096	rs9561428	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q31.3	NR	rs9561428-?	NR	9E-6		1.8346	[NR]	Affymetrix [722112]	N
1305	chr13	94380135	94380136	rs1320551	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q31.3	GPC6	rs1320551-A	0.0514317	2E-22		0.0412953	[0.033-0.05] unit decrease	NR [13737936] (imputed)	N
1305	chr13	94380135	94380136	rs1320551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q31.3		rs1320551-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1305	chr13	94380457	94380457	rs147720516	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q31.3		rs147720516-?	NR	6E-25		0.0462565	[0.037-0.055] unit decrease	Affymetrix [20259828] (imputed)	N
1305	chr13	94380457	94380457	rs147720516	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q31.3	GPC6	rs147720516-T	0.0545925	2E-6	(women)	0.0464764	[0.026-0.067] unit decrease	NR [17166351] (imputed)	N
1305	chr13	94380457	94380457	rs147720516	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q31.3	GPC6	rs147720516-T	0.0543494	1E-10		0.0487735	[0.034-0.064] unit decrease	NR [17166351] (imputed)	N
1305	chr13	94380457	94380457	rs147720516	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q31.3	GPC6	rs147720516-T	0.0540709	8E-6	(men)	0.0516487	[0.029-0.074] unit decrease	NR [17166351] (imputed)	N
1305	chr13	94408505	94408506	rs7995215	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	13q31.3	GPC6	rs7995215-?	NR	1E-8				Affymetrix [504219]	N
1305	chr13	94426352	94426353	rs9584154	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q31.3	NR	rs9584154-A	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
1306	chr13	94610985	94610986	rs1591697	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q31.3	NA	rs1591697-T		2E-8		0.0110998	[0.0072-0.015] unit decrease	Illumina [13288253] (imputed)	N
1307	chr13	94708382	94708383	rs9301928	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q31.3		rs9301928-?	NR	5E-9				Affymetrix [NR] (imputed)	N
1308	chr13	94826619	94826620	rs9589924	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	13q31.3		rs9589924-G	0.932281	1E-6		0.0185289	[0.011-0.026] unit decrease	Illumina [13900000] (imputed)	N
1308	chr13	94870764	94870765	rs1572050	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	13q31.3	GPC6	rs1572050-A	0.10	6E-6		0.313	[0.18-0.45] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1309	chr13	94940308	94940309	rs1409173	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q31.3	GPC6, GPC6-AS1, DCT	rs1409173-C	NR	7E-6	(sleep onset irregularity)	0.04399	[0.025-0.063] unit increase	Affymetrix [7141204] (imputed)	N
1309	chr13	94952831	94952832	rs9301951	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	13q31.3	GPC6	rs9301951-C	0.04	9E-7		0.26	[0.15-0.37] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
1309	chr13	94983444	94983445	rs68151129	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lower facial height	2,447 European ancestry individuals	671 European ancestry individuals	13q31.3	Intergenic	rs68151129-T	0.1226	1E-7		0.7802	[0.47-1.09] unit increase	Illumina [34985077] (imputed)	N
1309	chr13	95003485	95003486	rs9524452	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	13q31.3	GPC6	rs9524452-G	0.712	1E-6		0.021	[0.013-0.029] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1309	chr13	95019637	95019638	rs66781047	32766473	Yoshida K	2020-05-19	Hepatol Commun	Genome-Wide Association Study of Lean Nonalcoholic Fatty Liver Disease Suggests Human Leukocyte Antigen as a Novel Candidate Locus.	Lean nonalcoholic fatty liver disease	275 Japanese ancestry cases, 1,411 Japanese ancestry controls	NA	13q31.3	NR	rs66781047-?	NR	1E-6		1.74	[1.39-2.17]	Affymetrix [NR]	N
1310	chr13	95067120	95067121	rs191275341	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q32.1	Intergenic	rs191275341-C	1.0	2E-7	(AA)	0.481	unit increase	Illumina [NR] (imputed)	N
1310	chr13	95067120	95067121	rs191275341	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q32.1	Intergenic	rs191275341-C	1.0	1E-8	(AA)	2.669	NR unit increase	Illumina [NR] (imputed)	N
1310	chr13	95072135	95072136	rs9590003	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	13q32.1		rs9590003-A	NR	1E-6		5.24	[2.73-10.07]	Illumina [10838245] (imputed)	N
1310	chr13	95075218	95075219	rs72636617	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	13q32.1	DCT, GPC6	rs72636617-A	0.09	6E-6		1.49		Affymetrix [at least 730985] (imputed)	N
1310	chr13	95156197	95156198	rs9561570	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	13q32.1	DCT	rs9561570-T	NR	1E-9		0.055	[0.012-0.098] unit increase	Affymetrix [8351141] (imputed)	N
1311	chr13	95162361	95162362	rs717769	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	13q32.1	DCT	rs717769-T	0.338	6E-68		0.048	[0.042-0.054] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1311	chr13	95172522	95172523	rs16949906	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q32.1	NR	rs16949906-?	NR	1E-7				Affymetrix [NR]	N
1311	chr13	95196558	95196559	rs6492711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q32.1		rs6492711-?	NR	6E-110				NR [~ 8900000] (imputed)	N
1311	chr13	95196558	95196559	rs6492711	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	13q32.1	DCT	rs6492711-T	0.343	3E-92		1.175	NR	Affymetrix [9154080] (imputed)	N
1311	chr13	95217851	95217852	rs7997628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	13q32.1	NR	rs7997628-A	0.350074	3E-8		0.0172862	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1311	chr13	95218013	95218014	rs9524537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q32.1	NR	rs9524537-C	NR	2E-22		0.0272	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1311	chr13	95222889	95222890	rs35678857	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs35678857-C	0.648162	1E-8		0.0235497	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95222889	95222890	rs35678857	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs35678857-C	0.648162	1E-8		0.0235805	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95222889	95222890	rs35678857	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	13q32.1		rs35678857-C	0.648155	4E-8		0.0221045	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95222889	95222890	rs35678857	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs35678857-C	0.648162	8E-13		0.0297217	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95222889	95222890	rs35678857	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	13q32.1		rs35678857-C	0.648162	2E-9		0.024132	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	5E-12		0.0288084	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	2E-12		0.0293788	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	5E-9		0.0242767	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	4E-11		0.027191	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	7E-9		0.0242318	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	8E-13		0.029735	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	5E-8		0.0226443	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	8E-12		0.0283278	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	3E-10		0.0270821	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	1E-10		0.0278156	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	2E-11		0.0281261	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95231824	95231825	rs2275647	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q32.1		rs2275647-G	0.648116	2E-12		0.0291484	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	9E-15		0.0316988	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	1E-11		0.0281817	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	7E-12		0.0279822	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	9E-10		0.0255026	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	4E-10		0.026453	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	13q32.1		rs9556403-A	0.647577	8E-11		0.0266419	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	13q32.1	NR	rs9556403-G	0.350483	7E-10		0.00722628	[0.0047-0.0098] unit increase	Affymetrix [16585854] (imputed)	N
1311	chr13	95236824	95236825	rs9556403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	13q32.1	NR	rs9556403-G	0.350483	7E-7		0.00676036	[0.0038-0.0097] unit increase	Affymetrix [16585866] (imputed)	N
1311	chr13	95247137	95247137	rs769447487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q32.1	NR	rs769447487-T	0.30673799999999996	2E-24		0.00852959	[0.0067-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
1311	chr13	95247137	95247137	rs769447487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	13q32.1	NR	rs769447487-T	0.307125	2E-19		0.0108424	[0.0084-0.0133] unit increase	Affymetrix [16582621] (imputed)	N
1311	chr13	95247137	95247137	rs769447487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q32.1	NR	rs769447487-T	0.30673799999999996	3E-20		0.00858616	[0.0066-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
1311	chr13	95247137	95247137	rs769447487	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	13q32.1	NR	rs769447487-T	0.307125	9E-19		0.0112871	[0.0087-0.0139] unit increase	Affymetrix [16582614] (imputed)	N
1311	chr13	95248565	95248566	rs2298058	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q32.1	TGDS	rs2298058-C	0.69325	6E-92		0.00509063	[0.0046-0.0056] unit decrease	Affymetrix [13995440] (imputed)	N
1311	chr13	95248565	95248566	rs2298058	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q32.1	intergenic	rs2298058-T	0.3135	3E-20		0.0245	[0.019-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1311	chr13	95253130	95253131	rs9561643	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q32.1	GPR180	rs9561643-A	0.685274	2E-14		0.016521	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1311	chr13	95253919	95253920	rs3897473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	13q32.1		rs3897473-G	0.636903	2E-8		0.0225376	[0.015-0.03] unit increase	Illumina [13474352] (imputed)	N
1311	chr13	95253919	95253920	rs3897473	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q32.1	GPR180	rs3897473-T	0.379231	1E-8		0.0115617	[0.0076-0.0155] unit increase	Affymetrix [NR] (imputed)	N
1311	chr13	95254381	95254382	rs9556404	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q32.1		rs9556404-A	NR	9E-7		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1311	chr13	95254381	95254382	rs9556404	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q32.1	NR	rs9556404-A	NR	5E-9		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1311	chr13	95256304	95256305	rs6492720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q32.1		rs6492720-C	NR	2E-63		0.0358	[0.032-0.04] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1311	chr13	95256304	95256305	rs6492720	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	13q32.1	GPR180	rs6492720-T	0.31	2E-52		15.2	z-score increase	Affymetrix [4311822] (imputed)	N
1311	chr13	95256304	95256305	rs6492720	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	13q32.1	GPR180	rs6492720-?		7E-14		0.0312	[0.023-0.039] unit decrease	Illumina [31500000] (imputed)	N
1311	chr13	95258943	95258944	rs6492721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	13q32.1		rs6492721-C	NR	2E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1311	chr13	95258943	95258944	rs6492721	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	13q32.1	GPR180	rs6492721-?	NR	3E-11		0.0188	[0.014-0.024] unit increase	Affymetrix [5701386] (imputed)	N
1311	chr13	95279504	95279505	rs9524568	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	13q32.1	GPR180	rs9524568-?	NR	2E-8		0.0258	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1311	chr13	95280832	95280833	rs187295598	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		13q32.1	GPR180	rs187295598-T	0.988	6E-6	(liability model)	0.34	[0.18-0.5] unit decrease	NR [19725427] (imputed)	N
1311	chr13	95284979	95284980	rs1341267	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	13q32.1	GPR180	rs1341267-A	0.4222	3E-8	(Trans-ethnic initial)	0.0184	[0.012-0.025] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1312	chr13	95297875	95297876	rs9516452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	13q32.1	NR	rs9516452-C	NR	8E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1312	chr13	95376448	95376449	rs4454832	33606446	Kim SK	2021-02-18	Med Sci Sports Exerc	Identification of Three Loci Associated with Achilles Tendon Injury Risk from a Genome-wide Association Study.	Achilles tendon injury	12,354 European ancestry cases, 483,080 European ancestry controls	NA	13q32.1	SOX21, GPR180	rs4454832-A	0.21	3E-8		1.1	[NR]	Affymetrix [10183576] (imputed)	N
1312	chr13	95388116	95388117	rs184488877	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	13q32.1	NR	rs184488877-A	0.007	2E-6		0.89	[-0.18048-0.55648] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1313	chr13	95463391	95463392	rs9302001	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	13q32.1	intergenic	rs9302001-?	0.20	3E-7				Affymetrix [253903]	N
1313	chr13	95466233	95466237	rs775754127	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	13q32.1	RPL21P112	rs775754127-CTAAA	0.9984	4E-6		0.9577	[0.55-1.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1313	chr13	95505261	95505262	rs11070098	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	intergenic	rs11070098-G	0.204	8E-6	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
1313	chr13	95505261	95505262	rs11070098	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	intergenic	rs11070098-G	0.204	5E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1313	chr13	95508653	95508654	rs11842203	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	3,566 European ancestry individuals	4,680 European ancestry individuals	13q32.1		rs11842203-G	0.053414565	7E-11				Illumina [7417619] (imputed)	N
1313	chr13	95517621	95517622	rs2209852	24571439	Nudel R	2014-02-26	Genes Brain Behav	Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment.	Parent of origin effect on language impairment (paternal)	153 European ancestry case-parent trios, 54 European ancestry case-mother duos, 12 European ancestry case-father duos, 18 European ancestry cases	NA	13q32.1	LOC100129259, ABCC4	rs2209852-?		6E-6				Illumina [614937]	N
1313	chr13	95531310	95531311	rs73547640	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema in chronic obstructive pulmonary disease	514 Korean ancestry individuals	NA	13q32.1		rs73547640-?	NR	2E-7		1.4	[0.88-1.92] unit decrease	NR [599248] (imputed)	N
1313	chr13	95531310	95531311	rs73547640	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	13q32.1		rs73547640-?	NR	2E-6		1.34	[0.79-1.89] unit decrease	NR [599248] (imputed)	N
1314	chr13	95571785	95571786	rs61965473	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	13q32.1		rs61965473-T	0.023429	4E-8		2.034588	NR	Affymetrix [7846216] (imputed)	N
1314	chr13	95575450	95575451	rs76490768	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute xerostomia)	802 Dutch ancestry individuals	241 Dutch ancestry individuals	NA		rs76490768-T	NR	8E-6		0.33146393	[0.19-0.48] decrease	Illumina [6334277] (imputed)	N
1314	chr13	95592805	95592806	rs61965478	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q32.1		rs61965478-?	NR	3E-6		1.2594622	[1.14332992779629-1.38739057096706]	Illumina [up to 7827597] (imputed)	N
1314	chr13	95650054	95650055	rs9524742	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	13q32.1		rs9524742-T	0.433583691	3E-15				Illumina [7417619] (imputed)	N
1314	chr13	95680131	95680132	rs4584690	31196165	Lee E	2019-06-13	Hum Genomics	Genome-wide enriched pathway analysis of acute post-radiotherapy pain in breast cancer patients: a prospective cohort study.	Acute post-radiotherapy pain in breast cancer	136 Hispanic cases, 75 European ancestry cases, 102 African ancestry cases, 45 cases, 265 Hispanic controls, 282 European ancestry controls, 194 African ancestry controls, 45 controls	NA	13q32.1	ABCC4, MRP4	rs4584690-T	0.18	5E-6		1.85	[1.85-2.42]	Illumina [1344832] (imputed)	N
1314	chr13	95680284	95680285	rs4148546	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q32.1	ABCC4	rs4148546-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1315	chr13	95734096	95734097	rs11620327	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.1	CLDN10	rs11620327-?	NR	2E-6	(alpha hydroxybutyric acid)	0.40619656	[0.24-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
1315	chr13	95770424	95770425	rs4773840	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Postherpetic neuralgia	89 Japanese ancestry cases, 282 Japanese ancestry controls	NA	13q32.1	ABCC4	rs4773840-?	NR	2E-7				Illumina [445723]	N
1315	chr13	95775431	95775432	rs16950650	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	13q32.1	ABCC4	rs16950650-T	NR	2E-7	(Dominant model)	30.2	[8.4-109.0]	Affymetrix [334127]	N
1316	chr13	95815534	95815535	rs3765535	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	13q32.1	ABCC4	rs3765535-G	0.097	7E-6	(O'Connor Slope)	0.065	[NR] unit increase	Illumina [546355]	N
1316	chr13	95874955	95874956	rs1926657	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	13q32.1	ABCC4	rs1926657-?	NR	2E-6				Affymetrix [70897]	N
1316	chr13	95893511	95893512	rs2892714	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q32.1		rs2892714-A	0.505	5E-15				Affymetrix [10369434] (imputed)	N
1316	chr13	95894626	95894627	rs9524862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q32.1	ABCC4	rs9524862-A	0.4933	9E-22		0.03508941	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1316	chr13	95894922	95894923	rs9302051	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	13q32.1		rs9302051-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1316	chr13	95894936	95894937	rs9516547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q32.1	ABCC4	rs9516547-T	0.9241	2E-28		0.07672933	[0.063-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1316	chr13	95896320	95896321	rs6492772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	13q32.1	NR	rs6492772-T	0.278683	8E-44		0.057292	[0.049-0.065] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1316	chr13	95896498	95896499	rs7324464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q32.1	ABCC4	rs7324464-G	0.9165688	8E-93		0.08573775	[0.078-0.094] unit increase	Affymetrix [93095623] (imputed)	N
1316	chr13	95896498	95896499	rs7324464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q32.1	NR	rs7324464-G	0.873097	1E-138				Affymetrix, Illumina [24588908] (imputed)	N
1316	chr13	95896498	95896499	rs7324464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q32.1	NR	rs7324464-G	0.914227	6E-100		0.069386	[0.063-0.076] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1316	chr13	95897189	95897190	rs4148448	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q32.1		rs4148448-A	0.083	2E-16				Affymetrix [10369434] (imputed)	N
1316	chr13	95897189	95897190	rs4148448	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q32.1		rs4148448-A	0.083	5E-33				Affymetrix [10369434] (imputed)	N
1316	chr13	95897358	95897359	rs4148445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q32.1	ABCC4	rs4148445-T	0.9165489	2E-101		0.08975439	[0.082-0.098] unit increase	Affymetrix [93095623] (imputed)	N
1316	chr13	95898206	95898207	rs4148441	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	13q32.1	NR	rs4148441-?	NR	5E-6		3.650684	[2.09-5.21] unit increase	Illumina [30743395] (imputed)	N
1316	chr13	95898206	95898207	rs4148441	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	13q32.1	ABCC4	rs4148441-G	NR	7E-12		4.117	[2.94-5.29] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1316	chr13	95899606	95899607	rs4148436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q32.1	ABCC4	rs4148436-G	0.379158	4E-38		0.031054402	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr13	95899606	95899607	rs4148436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q32.1	ABCC4	rs4148436-G	0.37914	1E-28		0.026695017	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1316	chr13	95899715	95899716	rs4148435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q32.1		rs4148435-A	NR	1E-101		0.0592	[0.054-0.065] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1316	chr13	95899715	95899716	rs4148435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	13q32.1		rs4148435-A	0.714186	2E-51		0.0553053	[0.048-0.062] unit increase	Illumina [13478928] (imputed)	N
1316	chr13	95899715	95899716	rs4148435	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	13q32.1	ABCC4	rs4148435-?	NR	7E-36		0.05872	[0.05-0.068] unit increase novel	Illumina [6108953] (imputed)	N
1316	chr13	95899715	95899716	rs4148435	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q32.1	ABCC4	rs4148435-A	0.9161	9E-30		0.07469402	[0.062-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
1316	chr13	95901075	95901076	rs12855244	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	13q32.1		rs12855244-A	0.2004	9E-6	(East Asian)	1.08	[1.04-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1316	chr13	95901240	95901241	rs4773860	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q32.1	ABCC4	rs4773860-T	0.5186	3E-30		0.04226349	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1316	chr13	95909660	95909661	rs9524868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	13q32.1		rs9524868-T	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1316	chr13	95913674	95913675	rs9524869	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	13q32.1	ABCC4	rs9524869-C	0.703052	6E-32	(N-acetylcarnosine)	0.296	[0.25-0.35] unit decrease	Illumina [13039987] (imputed)	N
1316	chr13	95922764	95922765	rs8002180	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	13q32.1	ABCC4	rs8002180-T	0.72	8E-23	(X-12244--N-acetylcarnosine)	0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1317	chr13	95971015	95971016	rs9302065	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	13q32.1	ABCC4	rs9302065-A	0.37	1E-19	(X-12244--N-acetylcarnosine)	0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1317	chr13	96011247	96011248	rs35980751	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q32.1	ABCC4	rs35980751-T	0.258618609818979	5E-9	(G_unclassified_F_Porphyromonadaceae_RNT)	0.196333	[0.13-0.26] unit increase	Illumina [7711310] (imputed)	N
1317	chr13	96050862	96050863	rs61972997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q32.1	NR	rs61972997-G	NR	3E-10		0.0216	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1317	chr13	96068203	96068204	rs7326821	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	13q32.1	CLDN10	rs7326821-A	0.8267	1E-7		0.0026	[0.0016-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1317	chr13	96071344	96071345	rs17235257	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	13q32.1	CLDN10	rs17235257-?		1E-6				Illumina [~ 9600000] (imputed)	N
1318	chr13	96094780	96094781	rs2066033	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q32.1	NR	rs2066033-C	NR	6E-13		0.0174	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1318	chr13	96109868	96109869	rs77008184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	13q32.1		rs77008184-G	NR	2E-10		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1318	chr13	96128874	96128875	rs17189719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	13q32.1	NR	rs17189719-G	NR	2E-9		0.0232	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1318	chr13	96128874	96128875	rs17189719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q32.1	NR	rs17189719-G	NR	7E-27		0.0416	[0.034-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1318	chr13	96130394	96130395	rs2095774	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	13q32.1	NR	rs2095774-A	0.1	2E-11		0.02	[0.014-0.026] unit increase	NR [NR]	N
1318	chr13	96132318	96132319	rs113036595	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	13q32.1	CLDN10-AS1	rs113036595-T	NR	4E-7		0.029	[0.017-0.041] unit increase	Illumina [27700000] (imputed)	N
1318	chr13	96133017	96133018	rs946228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q32.1		rs946228-A	NR	2E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1318	chr13	96145378	96145379	rs35058679	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q32.1	NR	rs35058679-T	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1318	chr13	96157115	96157116	rs4773912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	13q32.1	NR	rs4773912-C	NR	7E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1318	chr13	96193270	96193271	rs9525016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	13q32.1		rs9525016-A	NR	5E-10		0.0755	[0.052-0.099] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1319	chr13	96300871	96300872	rs12428035	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (cystatin C)	32,834 European ancestry individuals	14,930 European ancestry individuals	13q32.1	DZIP1	rs12428035-T	0.12	6E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1319	chr13	96300871	96300872	rs12428035	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	13q32.1	DZIP1	rs12428035-T	0.110	8E-7		0.013	[0.0071-0.0189] unit decrease	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
1319	chr13	96310013	96310014	rs9561925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q32.1		rs9561925-T	NR	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1319	chr13	96333578	96333579	rs149064544	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	13q32.1	NR	rs149064544-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1320	chr13	96408429	96408430	rs565570372	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	13q32.1	DNAJC3	rs565570372-T	0.0044	4E-6		0.9027	[0.52-1.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1321	chr13	96514304	96514305	rs4526890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	13q32.1	NR	rs4526890-T	NR	3E-9		0.0217	[0.014-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1321	chr13	96530536	96530537	rs8000018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q32.1		rs8000018-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1321	chr13	96546849	96546850	rs143508056	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FEV1/FVC)	371,898 European ancestry individuals	NA	13q32.1		rs143508056-?	NR	4E-8		0.104497	[0.067-0.142] unit decrease	NR [9800000] (imputed)	N
1321	chr13	96551951	96551952	rs72636558	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UGGT2	rs72636558-?	NR	1E-8		2.32282	[NR] unit increase	Affymetrix [NR] (imputed)	N
1321	chr13	96580857	96580858	rs7992824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q32.1		rs7992824-A	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1322	chr13	96609477	96609478	rs9556514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q32.1	NR	rs9556514-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1322	chr13	96665696	96665697	rs148108950	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	13q32.1	UGGT2	rs148108950-A	0.0055	6E-8		0.1299	[0.083-0.177] unit increase	Affymetrix, Illumina [at least 228985]	N
1322	chr13	96665696	96665697	rs148108950	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	13q32.1	UGGT2	rs148108950-A	0.007	7E-8		0.1293	[0.082-0.176] unit increase	Affymetrix, Illumina [at least 228985]	N
1323	chr13	96814455	96814456	rs7318247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q32.1		rs7318247-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1323	chr13	96823723	96823724	rs75674569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q32.1	NR	rs75674569-A	0.0997	3E-9		0.025337664	[0.017-0.034] unit decrease	NR [~ 10000000] (imputed)	N
1324	chr13	96873358	96873359	rs117363462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q32.1		rs117363462-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1324	chr13	96897855	96897856	rs9562057	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q32.1	HS6ST3	rs9562057-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1324	chr13	96922190	96922191	rs1927790	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q32.1	NA	rs1927790-T	0.606	2E-17		0.014	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1324	chr13	96922190	96922191	rs1927790	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q32.1	NA	rs1927790-T	0.606	2E-17		0.014	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1324	chr13	96922190	96922191	rs1927790	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q32.1	NR	rs1927790-T	NR	2E-10		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1324	chr13	96922190	96922191	rs1927790	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	13q32.1	HS6ST3	rs1927790-C	0.45	3E-8		0.013	[0.0091-0.0169] unit increase	Illumina [6108953] (imputed)	N
1324	chr13	96932867	96932868	rs2389631	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q32.1	NR	rs2389631-C	0.3334	2E-10		1.0405828	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1324	chr13	96951432	96951433	rs2038823	21310492	Huang YC	2011-02-08	Ophthalmology	Genome-wide association study of diabetic retinopathy in a Taiwanese population.	Diabetic retinopathy	174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls	NA	13q32.1	HS6ST3	rs2038823-C	NR	5E-11				Illumina [~ 550000]	N
1324	chr13	96970875	96970876	rs2182066	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q32.1	Intergenic	rs2182066-C	0.0831	5E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1324	chr13	96977694	96977695	rs1925113	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q32.1	NA	rs1925113-A	0.4347	3E-9	(Female)	1.045	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1324	chr13	96982540	96982541	rs7990098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q32.1		rs7990098-G	NR	6E-13		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1324	chr13	96982540	96982541	rs7990098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q32.1		rs7990098-G	NR	2E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1324	chr13	96982540	96982541	rs7990098	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q32.1	HS6ST3	rs7990098-T	0.587612	5E-11		0.00915821	[0.0064-0.0119] unit decrease	Affymetrix [12370749]	N
1325	chr13	96993464	96993465	rs61966940	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q32.1		rs61966940-A	0.9	6E-13		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
1325	chr13	97012354	97012355	rs9554348	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q32.1	NR	rs9554348-T	NR	3E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1325	chr13	97014566	97014567	rs146838878	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	13q32.1	NR	rs146838878-?		6E-6		5.08	[NR]	Illumina [NR] (imputed)	N
1325	chr13	97017547	97017548	rs7989336	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	13q32.1	HS6ST3	rs7989336-A	0.47	1E-8	(Obesity class II)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1325	chr13	97019089	97019090	rs7996639	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q32.1	NR	rs7996639-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1325	chr13	97019089	97019090	rs7996639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q32.1		rs7996639-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1325	chr13	97019089	97019090	rs7996639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q32.1		rs7996639-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1325	chr13	97019089	97019090	rs7996639	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q32.1	NR	rs7996639-?	NR	2E-8		0.12511	[0.082-0.169] unit increase	Affymetrix [7794483] (imputed)	N
1325	chr13	97020704	97020705	rs912690	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q32.1	NA	rs912690-C	0.5556	2E-17		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1325	chr13	97043717	97043718	rs1164587	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	13q32.1		rs1164587-?	NR	3E-6	(mucinous_all)	1.53		Illumina [11595112] (imputed)	N
1325	chr13	97049003	97049004	rs9634489	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	13q32.1	NR	rs9634489-A	NR	7E-11		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1325	chr13	97049003	97049004	rs9634489	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	13q32.1	UGGT2	rs9634489-A	0.507422040189157	3E-10		0.017616455	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1325	chr13	97049003	97049004	rs9634489	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q32.1	HS6ST3	rs9634489-G	0.502	1E-6		0.015	[0.0087-0.0209] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1325	chr13	97049003	97049004	rs9634489	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q32.1	HS6ST3	rs9634489-G	0.499	2E-6	(EA, men)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1325	chr13	97049003	97049004	rs9634489	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	13q32.1	HS6ST3	rs9634489-G	0.497	4E-7	(EA)	0.016	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1325	chr13	97076076	97076077	rs9513142	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	13q32.1	NR	rs9513142-G	NR	4E-7		0.01452	[0.0089-0.0201] unit decrease	Illumina [541493]	N
1325	chr13	97076829	97076830	rs404177	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q32.1		rs404177-?	NR	2E-8				NR [NR]	N
1325	chr13	97076829	97076830	rs404177	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q32.1		rs404177-?	NR	4E-8				NR [NR]	N
1325	chr13	97081243	97081244	rs4341632	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	13q32.1		rs4341632-?	NR	2E-6				Illumina [7401356] (imputed)	N
1325	chr13	97101570	97101571	rs1164598	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q32.1		rs1164598-A	0.627	4E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1325	chr13	97101570	97101571	rs1164598	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q32.1	HS6ST3	rs1164598-A	0.6207	6E-9		0.012046104	[0.008-0.0161] unit decrease	Affymetrix [11514654] (imputed)	N
1325	chr13	97101570	97101571	rs1164598	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q32.1	NR	rs1164598-T	0.39	9E-12		0.00753466	[0.0054-0.0097] unit increase	NR [9732723] (imputed)	N
1325	chr13	97101570	97101571	rs1164598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	13q32.1		rs1164598-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1326	chr13	97165138	97165139	rs9513157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q32.1		rs9513157-T	NR	3E-8		0.0303	[0.02-0.041] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1326	chr13	97166482	97166483	rs117358016	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q32.1	NR	rs117358016-A	NR	8E-6		1.16	[NR]	Illumina [7158791] (imputed)	N
1326	chr13	97176584	97176585	rs61967710	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q32.1	NR	rs61967710-G	0.9413	3E-8		0.0554	[0.036-0.075] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	8E-9	(GMFB)	0.009527	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	7E-10	(SH3BGRL3)	0.02274	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	4E-9	(TOM1)	0.009849	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	3E-9	(CLTC)	0.6974	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	3E-8	(TWF1)	0.05554	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	3E-8	(DDX39B)	0.1731	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	3E-12	(NARS)	0.07678	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	2E-8	(SNRPD3)	0.05354	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	1E-9	(CLTCL1)	0.245	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	1E-9	(ATP6V1E1)	0.01335	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	1E-9	(ABRACL)	0.04875	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97196529	97196530	rs117226492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.1	NR	rs117226492-A	0.01045	1E-8	(HNRNPAB)	0.04604	NR unit increase	Illumina [1671387] (imputed)	N
1326	chr13	97208897	97208898	rs1414622	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	13q32.1	HS6ST3	rs1414622-T	0.9222	3E-8		0.042684127	[0.028-0.058] unit increase	NR [NR]	N
1327	chr13	97330694	97330695	rs138526838	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	13q32.1		rs138526838-G	0.982362	5E-6		0.0362983	[0.017-0.056] unit increase	Illumina [7666802] (imputed)	N
1327	chr13	97344737	97344738	rs490016	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	13q32.1	NR	rs490016-A	0.79	3E-9		0.0133	[0.0088-0.0178] unit decrease	NR [NR]	N
1328	chr13	97395300	97395301	rs9584408	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	13q32.1	HS6ST3	rs9584408-G		8E-6		2.69	[NR] unit increase	Illumina [up to 5481607] (imputed)	N
1328	chr13	97449257	97449258	rs112065802	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	13q32.1	NR	rs112065802-C	0.02304	4E-7		2.254	[1.25-3.26] unit increase	Illumina [at least 567677] (imputed)	N
1328	chr13	97460898	97460899	rs7333329	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q32.1	NR	rs7333329-C	0.0196	2E-7		7.7018	[4.79-10.62] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1328	chr13	97460898	97460899	rs7333329	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	13q32.1	NR	rs7333329-C	0.0196	2E-7		7.7018	[4.79-10.62] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1328	chr13	97508452	97508453	rs16953620	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	13q32.1	HS6ST3	rs16953620-A	0.86	3E-6		0.218	[0.13-0.31] unit decrease	Illumina [NR] (imputed)	N
1328	chr13	97508738	97508739	rs16953622	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	13q32.1	HS6ST3	rs16953622-T	0.015	7E-6	(3MSE)	6.9917	[3.97-10.01] unit decrease	Affymetrix [> 371951] (imputed)	N
1328	chr13	97511936	97511937	rs72646783	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	13q32.1	NR	rs72646783-T	0.0377415	6E-6		1.35	[1.19-1.55]	Illumina [8992756] (imputed)	N
1329	chr13	97518284	97518285	rs9516776	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	13q32.1	HS6ST3	rs9516776-A	0.33849700000000005	3E-8		0.0234035	[0.015-0.032] unit increase	Affymetrix [641018] (imputed)	N
1329	chr13	97548412	97548413	rs146306098	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	13q32.1	NR	rs146306098-G	0.98279	8E-6		0.325	[0.18-0.47] unit increase	NR [9260588] (imputed)	N
1329	chr13	97603582	97603583	rs118154962	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT3	5,358 Icelandic ancestry individuals	NA	13q32.1		rs118154962-C	0.02219	2E-12		0.0958184	[0.069-0.123] unit increase	Illumina [7506463] (imputed)	N
1329	chr13	97612538	97612539	rs1007175	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	13q32.1	LINC00359	rs1007175-?		1E-6				Illumina [301908]	N
1330	chr13	97727950	97727951	rs149528824	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	13q32.1	NR	rs149528824-C	0.989684	3E-6		0.417	[0.24-0.59] unit increase	NR [9260588] (imputed)	N
1331	chr13	97847991	97847992	rs9516855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q32.1	Intergenic	rs9516855-A	0.9475	6E-9	(MTAG)	0.0298	[0.02-0.04] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr13	97847991	97847992	rs9516855	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q32.1	NR	rs9516855-A	NR	4E-8		5.483	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1331	chr13	97849279	97849280	rs9516857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q32.1	Intergenic	rs9516857-T	0.9364	1E-12	(MTAG)	0.026	[0.019-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr13	97849279	97849280	rs9516857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q32.1	Intergenic	rs9516857-T	0.9364	1E-10		0.0257	[0.018-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1331	chr13	97854599	97854600	rs72637434	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	13q32.1	OXGR1, MBNL2	rs72637434-A	0.15	4E-6		69.783646	[40.28-99.29] kcal/day decrease	Affymetrix [491265]	N
1331	chr13	97854888	97854889	rs9516861	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q32.1	NR	rs9516861-A	NR	3E-10		6.29	z score increase	Affymetrix [10847151] (imputed)	N
1331	chr13	97854888	97854889	rs9516861	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	13q32.1	MBNL2	rs9516861-A	0.141405	2E-8		5.58	z score increase	NR [10847151] (imputed)	N
1331	chr13	97857492	97857492	rs57422381	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	13q32.1	NR	rs57422381-?	0.07	3E-6		1.2195122	[1.12-1.33]	Illumina [~ 1113287] (imputed)	N
1331	chr13	97861010	97861011	rs9516865	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q32.1	Intergenic	rs9516865-A	0.9364	1E-10	(MTAG)	0.0217	[0.015-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1331	chr13	97865020	97865021	rs4771268	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	13q32.1	MBNL2	rs4771268-T	0.2295	1E-9		0.0675	[0.046-0.089] unit increase	NR [7784415] (imputed)	N
1331	chr13	97880758	97880759	rs76920930	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	13q32.1		rs76920930-?	NR	5E-6		0.54	[0.31-0.77] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1331	chr13	97901004	97901005	rs75122859	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	13q32.1	MBNL2	rs75122859-T	0.065	3E-18		0.45	[0.35-0.55] unit decrease	Affymetrix [339439]	N
1332	chr13	97918927	97918928	rs117956006	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	13q32.1	MBNL2	rs117956006-?	NR	6E-6	(adjusted for CYP2C19*2)	1.19	NR unit increase	Illumina [5009928] (imputed)	N
1332	chr13	97968000	97968001	rs12019957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q32.1		rs12019957-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1332	chr13	97988688	97988689	rs55684003	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	13q32.1	MBNL2	rs55684003-A	0.6991	4E-13		0.1193	[0.087-0.151] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1332	chr13	97989720	97989721	rs9556702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q32.1	Intergenic	rs9556702-A	0.5107	1E-11	(MTAG)	0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1332	chr13	97989720	97989721	rs9556702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q32.1	Intergenic	rs9556702-A	0.5107	3E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1332	chr13	98002507	98002508	rs7318250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q32.1	Intergenic	rs7318250-A	0.4708	2E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1332	chr13	98016382	98016383	rs144506210	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	13q32.1	MBNL2	rs144506210-C	0.13	6E-7		77.91416	[47.29-108.53] kcal/day decrease	Affymetrix [491265]	N
1332	chr13	98016415	98016416	rs9556711	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q32.1	MBNL2	rs9556711-G	0.08	2E-6		0.163	[NR] unit decrease	Illumina [~ 300000]	N
1332	chr13	98016415	98016416	rs9556711	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	13q32.1	MBNL2	rs9556711-G	0.08	8E-7		0.167	[NR] unit decrease	Illumina [~ 300000]	N
1333	chr13	98053791	98053792	rs4771996	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.1	MBNL2	rs4771996-G	0.232	6E-6	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
1334	chr13	98200571	98200572	rs2770228	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	13q32.2	LOC121906	rs2770228-A		9E-6		0.08	[0.05-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1334	chr13	98203726	98203727	rs349114	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.2	LOC121906	rs349114-A	0.224	3E-6	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
1334	chr13	98244888	98244889	rs9516970	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	13q32.2	NR	rs9516970-A	NR	5E-7		1.065	[1.04-1.09]	Illumina [11933700] (imputed)	N
1334	chr13	98272901	98272902	rs9300430	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	13q32.2	RAP2A	rs9300430-C	NR	1E-9	(Gammaproteobacteria class)	0.61	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1335	chr13	98363481	98363482	rs9584669	26488411	Matsukura M	2015-10-21	PLoS One	Genome-Wide Association Study of Peripheral Arterial Disease in a Japanese Population.	Peripheral artery disease	785 Japanese ancestry cases, 3,383 Japanese ancestry controls	2,379 Japanese ancestry cases, 16,752 Japanese ancestry controls	13q32.2	IPO5, RAP2A	rs9584669-C	NR	7E-14		1.72	[1.52-2.00]	Illumina [431666]	N
1335	chr13	98379880	98379881	rs147843840	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD16-CD56 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q32.2		rs147843840-T	0.01025	1E-8		0.7521	[0.5-1.01] unit decrease	Illumina [18030777] (imputed)	N
1336	chr13	98503978	98503979	rs185342442	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Cognitive function	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	13q32.2	intergenic	rs185342442-G		4E-7		3.1	[NR] unit decrease	Illumina [NR] (imputed)	N
1336	chr13	98556787	98556788	rs78767555	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.2	NR	rs78767555-C	0.01394	4E-9	(NIPSNAP1)	0.2669	NR unit increase	Illumina [1671387] (imputed)	N
1336	chr13	98556787	98556788	rs78767555	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.2	NR	rs78767555-C	0.01394	3E-10	(LONP1)	0.1629	NR unit increase	Illumina [1671387] (imputed)	N
1336	chr13	98556787	98556788	rs78767555	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.2	NR	rs78767555-C	0.01394	2E-8	(AK4)	0.279	NR unit increase	Illumina [1671387] (imputed)	N
1336	chr13	98556787	98556788	rs78767555	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.2	NR	rs78767555-C	0.01394	2E-8	(ACSM2A)	0.245	NR unit increase	Illumina [1671387] (imputed)	N
1336	chr13	98561060	98561061	rs61970410	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q32.2	NR	rs61970410-?	NR	2E-9		6.042	NR z score increase	Illumina [at least 830937] (imputed)	N
1337	chr13	98575842	98575843	rs9517132	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	13q32.2	RANBP5	rs9517132-?	NR	3E-6	(EA)	2.62	[1.52-3.72] unit decrease	Affymetrix, Illumina [2033301]	N
1337	chr13	98641857	98641858	rs117023938	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	13q32.2	NR	rs117023938-T	0.052	5E-6		0.482788	[0.28-0.69] unit increase	Illumina [~ 6600000] (imputed)	N
1338	chr13	98700616	98700617	rs16954776	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	13q32.2	IPO5	rs16954776-A	0.0156	9E-7		5.1206	[NR] unit decrease	Illumina [1216189] (imputed)	N
1338	chr13	98757344	98757345	rs9556880	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	13q32.2		rs9556880-?	NR	7E-7		1.08384	[1.05-1.12]	NR [685523]	N
1338	chr13	98791935	98791936	rs16954976	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.2	RNF113B	rs16954976-?	NR	3E-6	(LPE 22:6)	0.35931244	[0.21-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1338	chr13	98823145	98823146	rs72655104	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	13q32.2	FARP1	rs72655104-G	0.14	7E-6		1.45		Affymetrix [at least 730985] (imputed)	N
1338	chr13	98827034	98827035	rs285098	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	13q32.2	intergenic	rs285098-?	0.67	7E-6		1.05	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1339	chr13	98831594	98831595	rs9556893	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	13q32.2	FARP1	rs9556893-?	NR	6E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1339	chr13	98859334	98859335	rs9556903	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	13q32.2	FARP1	rs9556903-?	NR	8E-11		0.0440569	[0.031-0.057] unit decrease	Illumina [4804024] (imputed)	N
1339	chr13	98863094	98863095	rs9556908	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	13q32.2	FARP1	rs9556908-A	0.2918	3E-7		1.12513	NR	Affymetrix, Illumina [30341632] (imputed)	N
1339	chr13	98866995	98866996	rs9513373	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	13q32.2	FARP1, RNF113B, MIR3170	rs9513373-C	0.02	8E-6		4.18	[3.55-4.81]	Illumina [8809853] (imputed)	N
1339	chr13	98869341	98869342	rs4238213	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology and risky substance use	604 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	13q32.2		rs4238213-T	0.4436	4E-6		1.42	[1.22-1.65]	Illumina [248101]	N
1339	chr13	98879906	98879907	rs61970167	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium kashiwanohense abundance in stool	5,959 Finnish ancestry individuals	NA	13q32.2		rs61970167-T	0.235976	4E-8		0.0934918	[0.06-0.127] unit decrease	Illumina [7980478] (imputed)	N
1339	chr13	98904567	98904568	rs6491411	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q32.2	FARP1	rs6491411-A	NR	9E-7	(between families)	4.911	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1339	chr13	98943229	98943230	rs145103971	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FARP1	rs145103971-?	NR	6E-12	(female)	0.724388	[NR] unit increase	Affymetrix [NR] (imputed)	N
1339	chr13	98943638	98943639	rs1564454	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls, 1,626 East Asian ancestry cases, 28,195 East Asian ancestry controls, 355 South Asian ancestry cases, 6,707 South Asian ancestry controls, 259 African American cases, 15,146 African American controls, 34 Asian ancestry cases, 333 Asian ancestry controls, 41 Latin American cases, 692 Latin American controls	NA	13q32.2	FARP1	rs1564454-G	0.42	1E-7		1.11	[1.07-1.16]	NR [~ 8000000] (imputed)	N
1339	chr13	98944592	98944593	rs610042	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	13q32.2		rs610042-?	NR	4E-7		0.917083	[0.88-0.95]	NR [688737]	N
1340	chr13	98960761	98960762	rs4318070	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	13q32.2	FARP1	rs4318070-?	NR	7E-6		0.004	[NR] unit decrease	Illumina [478011]	N
1340	chr13	98966316	98966317	rs688872	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	13q32.2	FARP1	rs688872-?	0.38	1E-6				Illumina [448293]	N
1340	chr13	98994029	98994030	rs9584805	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	13q32.2	FARP1	rs9584805-G	0.35	2E-6		0.44	[NR] unit decrease	Illumina [324623]	N
1340	chr13	99002031	99002032	rs17568378	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q32.2	NR	rs17568378-?	NR	1E-6		0.0084297	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1340	chr13	99051117	99051118	rs553397860	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	13q32.2	NR	rs553397860-?		9E-9		0.0172491	[0.011-0.023] unit increase	Affymetrix [19400418] (imputed)	N
1340	chr13	99052720	99052721	rs9513414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q32.2	Intergenic	rs9513414-C	0.8488	6E-16	(MTAG)	0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1340	chr13	99052720	99052721	rs9513414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q32.2	Intergenic	rs9513414-C	0.8488	2E-14		0.0208	[0.016-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1340	chr13	99055773	99055774	rs9513416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.2		rs9513416-A	0.8437	2E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1340	chr13	99080157	99080158	rs188975460	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	13q32.2	USP46, ERVMER34-1, RASL11B, SCFD2	rs188975460-?		2E-9				NR [7428630] (imputed)	N
1340	chr13	99081096	99081097	rs3825435	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q32.2	NR	rs3825435-?	NR	5E-12		6.902	NR z score increase	Illumina [at least 830937] (imputed)	N
1341	chr13	99092867	99092868	rs118156301	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	13q32.2	NR	rs118156301-?	NR	7E-6		0.5127	[0.3-0.72] unit increase	Illumina [at least 560000] (imputed)	N
1341	chr13	99094366	99094367	rs71437964	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	13q32.2	DOCK9-AS2	rs71437964-T	0.294	2E-7		0.133	[0.084-0.183] unit increase	Affymetrix [7519176] (imputed)	N
1341	chr13	99095030	99095031	rs9517299	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q32.2	FARP1	rs9517299-C	NR	2E-8		0.0097528	[0.0064-0.0132] unit decrease	Affymetrix [18485882] (imputed)	N
1341	chr13	99096033	99096034	rs9517302	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.2	FARP1	rs9517302-A	0.342	5E-6	(Sedentary&light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1341	chr13	99100045	99100046	rs9556958	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	13q32.2		rs9556958-T	0.5019	5E-9		44.51193	z score increase	NR [6814003]	N
1341	chr13	99100045	99100046	rs9556958	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q32.2	FARP1	rs9556958-T	0.4852	6E-17		0.016919889	[0.013-0.021] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	13q32.2	FARP1	rs9556958-T	NR	4E-8		0.011162	[0.0072-0.0151] unit decrease	Affymetrix [18485882] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q32.2	FARP1	rs9556958-?	NR	8E-10		0.012444864	[0.0085-0.0164] unit decrease	NR [7306098]	N
1341	chr13	99100045	99100046	rs9556958	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	13q32.2	STK24	rs9556958-T	0.5202	9E-13		0.013883109	[0.01-0.018] unit decrease	Illumina [9339358] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q32.2	Intergenic	rs9556958-T	0.5206	6E-18	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.2		rs9556958-T	0.5233	6E-15		0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q32.2	Intergenic	rs9556958-T	0.5233	5E-18	(MTAG)	0.0113	[0.0088-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q32.2	Intergenic	rs9556958-T	0.5243	1E-9	(MTAG)	0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr13	99100045	99100046	rs9556958	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	13q32.2	NR	rs9556958-T	0.5275	1E-11		0.015137261	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1341	chr13	99100473	99100474	rs9517310	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	13q32.2	FARP1	rs9517310-T	NR	3E-8		0.011125	[0.0072-0.0151] unit increase	Affymetrix [18485882] (imputed)	N
1341	chr13	99101057	99101057	rs144511092	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	13q32.2	STK24	rs144511092-?	NR	9E-9		0.00677149	[0.0045-0.0091] unit decrease	Affymetrix [NR] (imputed)	N
1341	chr13	99101425	99101426	rs9584850	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	13q32.2	FARP1	rs9584850-?	NR	7E-10				NR [2100000]	N
1341	chr13	99101425	99101426	rs9584850	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	13q32.2	NR	rs9584850-C	0.272	7E-8		0.021279898	[0.014-0.029] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1341	chr13	99105301	99105302	rs12463	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q32.2	STK24	rs12463-A	0.3001	9E-11		0.014448292	[0.01-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1341	chr13	99105891	99105892	rs9517313	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	13q32.2	STK24, FARP1	rs9517313-G	0.62	2E-11		0.033	unit decrease	NR [2324712] (imputed)	N
1341	chr13	99105891	99105892	rs9517313	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	13q32.2		rs9517313-?	NR	2E-14		0.0214	unit increase	NR [NR]	N
1341	chr13	99105891	99105892	rs9517313	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q32.2	STK24	rs9517313-G	NR	4E-10		0.010864	[0.0075-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
1341	chr13	99105891	99105892	rs9517313	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	13q32.2	NR	rs9517313-C	0.378737472698586	4E-13		0.011334392	[0.0083-0.0144] unit increase	NR [NR]	N
1341	chr13	99105891	99105892	rs9517313	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	13q32.2	NR	rs9517313-C	0.378737472698586	4E-13		0.007230617	[0.0053-0.0092] unit increase	NR [NR]	N
1341	chr13	99105891	99105892	rs9517313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	13q32.2		rs9517313-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1341	chr13	99105891	99105892	rs9517313	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	13q32.2	intergenic	rs9517313-C	0.37213	7E-13		7.174	z score increase	Illumina [18485882] (imputed)	N
1341	chr13	99109815	99109816	rs3783007	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	13q32.2	STK24	rs3783007-T	0.621	1E-12		0.0086	[0.0062-0.011] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1341	chr13	99109815	99109816	rs3783007	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	13q32.2	NR	rs3783007-G	0.378308974598675	8E-13		0.006780857	[0.0049-0.0086] unit increase	NR [NR]	N
1341	chr13	99109815	99109816	rs3783007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	13q32.2	Intergenic	rs3783007-T	0.625	1E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1341	chr13	99109815	99109816	rs3783007	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q32.2	NR	rs3783007-T	NR	3E-8		5.546	z score decrease	Affymetrix [10847151] (imputed)	N
1341	chr13	99111208	99111209	rs3783006	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q32.2		rs3783006-?	NR	5E-8				NR [NR]	N
1341	chr13	99111208	99111209	rs3783006	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	13q32.2	STK24, FARP1, SLC15A1	rs3783006-C	0.457	3E-7		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1341	chr13	99111208	99111209	rs3783006	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	13q32.2	STK24	rs3783006-C	0.454	8E-8	(Edu Years)	0.088	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
1341	chr13	99115040	99115041	rs4772087	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	13q32.2	NR	rs4772087-T	0.3732	2E-20		1.021	[1.017-1.026]	NR [8098588] (imputed)	N
1341	chr13	99116383	99116384	rs17574378	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q32.2	NA	rs17574378-T	0.7267	7E-14		0.014	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1341	chr13	99119159	99119160	rs61969407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q32.2		rs61969407-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1341	chr13	99120271	99120272	rs7339274	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q32.2	NR	rs7339274-?	NR	8E-10		0.14263	[0.097-0.188] unit decrease	Affymetrix [7794483] (imputed)	N
1341	chr13	99120271	99120272	rs7339274	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	13q32.2	NR	rs7339274-?	NR	2E-7	(male)	0.14825	[0.093-0.204] unit decrease	Affymetrix [7794483] (imputed)	N
1341	chr13	99120483	99120484	rs7334078	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	13q32.2	LINC01288	rs7334078-T	0.717026	4E-11	(EA)	0.0090649	[0.0064-0.0118] unit increase	Affymetrix [~ 8800000] (imputed)	N
1341	chr13	99120483	99120484	rs7334078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q32.2		rs7334078-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1341	chr13	99121346	99121347	rs35368417	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q32.2	STK24	rs35368417-C	0.4518	2E-9		0.012263741	[0.0083-0.0162] unit increase	Affymetrix [up to 18485882] (imputed)	N
1341	chr13	99121346	99121347	rs35368417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	13q32.2	NR	rs35368417-C	0.44036364587477	5E-9		0.007355543	[0.0049-0.0098] unit decrease	NR [NR]	N
1341	chr13	99121346	99121347	rs35368417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	13q32.2	NR	rs35368417-C	0.44036364587477	1E-9		0.007866881	[0.0053-0.0104] unit decrease	NR [NR]	N
1341	chr13	99122570	99122571	rs796617595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	13q32.2	NR	rs796617595-A	NR	3E-10		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1341	chr13	99123197	99123198	rs56294784	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	13q32.2	STK24	rs56294784-C	NR	3E-8		0.0096123	[0.0062-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
1341	chr13	99126302	99126303	rs9517320	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	13q32.2	STK24	rs9517320-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1341	chr13	99129652	99129653	rs3825430	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q32.2	NR	rs3825430-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1341	chr13	99131293	99131294	rs912330	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	13q32.2	STK24	rs912330-?	NR	4E-6		1.85	[1.43-2.44]	Illumina [2505093] (imputed)	N
1341	chr13	99166613	99166614	rs4772092	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q32.2	STK24	rs4772092-G	0.3752	1E-9		0.012587978	[0.0085-0.0167] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1341	chr13	99166613	99166614	rs4772092	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	13q32.2	NR	rs4772092-A	0.3793	4E-8		0.01	[0.0065-0.0135] unit decrease	NR [~ 27400000] (imputed)	N
1341	chr13	99169670	99169671	rs3858777	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	13q32.2	STK24	rs3858777-C	0.2966634464751958	3E-6	(AA)	0.3693	[0.21-0.52] unit increase	Illumina [at least 988306] (imputed)	N
1341	chr13	99177585	99177586	rs912336	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	13q32.2	STK24	rs912336-G	0.9095	3E-8		0.8591	NR	Affymetrix [up to 17556449] (imputed)	N
1341	chr13	99194124	99194125	rs4772094	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	13q32.2	STK24	rs4772094-T	0.4843	5E-10		0.012587472	[0.0086-0.0165] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1342	chr13	99222421	99222422	rs141994868	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	13q32.2	STK24	rs141994868-T	0.027	7E-6		4.508	z score increase	Illumina [at least 6190549] (imputed)	N
1342	chr13	99236470	99236471	rs7331420	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q32.2	STK24	rs7331420-G	0.714677	2E-9		0.00914179	[0.0062-0.0121] unit increase	Affymetrix [12370749]	N
1342	chr13	99236470	99236471	rs7331420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q32.2	NR	rs7331420-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1342	chr13	99243582	99243582	rs397965193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q32.2		rs397965193-GA	NR	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1342	chr13	99245865	99245866	rs9584870	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	13q32.2		rs9584870-T	0.634068	2E-8		0.0231552	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1342	chr13	99245865	99245866	rs9584870	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	13q32.2		rs9584870-T	0.634068	2E-8		0.0230984	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1342	chr13	99245865	99245866	rs9584870	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	13q32.2		rs9584870-T	0.634068	2E-8		0.0229915	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1342	chr13	99245865	99245866	rs9584870	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q32.2	STK24	rs9584870-T	0.633824	8E-9		0.0121656	[0.008-0.0163] unit increase	Affymetrix [NR] (imputed)	N
1342	chr13	99252698	99252699	rs72648719	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Methanobrevibacter B abundance in stool	5,959 Finnish ancestry individuals	NA	13q32.2		rs72648719-T	0.336136	4E-8		0.0360872	[0.023-0.049] unit increase	Illumina [7980478] (imputed)	N
1342	chr13	99264025	99264026	rs7998699	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q32.2	NR	rs7998699-?	NR	6E-10		0.31	[0.21-0.41] unit increase	Illumina [at least 830937] (imputed)	N
1342	chr13	99318357	99318358	rs57049649	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.2	NR	rs57049649-G	0.0122	9E-9	(GALE)	0.1548	NR unit decrease	Illumina [1671387] (imputed)	N
1343	chr13	99385989	99385990	rs9582259	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	13q32.3	SLC15A1	rs9582259-C		3E-8	(EA)			Illumina [NR]	N
1343	chr13	99395593	99395594	rs4646211	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	13q32.3	DOCK9	rs4646211-C	0.346	5E-12		1.28	NR	Illumina [at least 870261] (imputed)	N
1343	chr13	99426428	99426429	rs9557052	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q32.3	NR	rs9557052-?		5E-6				Illumina [4322238] (imputed)	N
1343	chr13	99427729	99427730	rs12430683	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	13q32.3	DOCK9, SLC15A1	rs12430683-?	NR	2E-7	(AA)	3.2	[2.02-4.38] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1343	chr13	99434809	99434810	rs8000794	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	13q32.3	DOCK9	rs8000794-G	0.46582	7E-7		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1343	chr13	99438617	99438618	rs9517448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q32.3		rs9517448-C	NR	2E-14		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1343	chr13	99438617	99438618	rs9517448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	13q32.3		rs9517448-C	0.340482	5E-14		0.0267665	[0.02-0.034] unit increase	Illumina [13478792] (imputed)	N
1343	chr13	99438617	99438618	rs9517448	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	13q32.3	DOCK9	rs9517448-A	0.7605	6E-16		0.007	[0.0052-0.0088] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1343	chr13	99438617	99438618	rs9517448	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	13q32.3	SLC15A1, DOCK9	rs9517448-?	NR	1E-13		0.02774	[0.02-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1344	chr13	99507188	99507204	rs147327821	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	13q32.3	NR	rs147327821-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1344	chr13	99517921	99517922	rs12875139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q32.3		rs12875139-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1344	chr13	99559134	99559135	rs4771320	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q32.3		rs4771320-?	NR	1E-57		0.0385993	[0.034-0.044] unit increase	Affymetrix [20259828] (imputed)	N
1344	chr13	99571921	99571922	rs9513510	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q32.3	DOCK9	rs9513510-G	0.301802	9E-67		0.0348838	[0.031-0.039] unit increase	NR [13737936] (imputed)	N
1344	chr13	99572711	99572712	rs9517483	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q32.3	DOCK9	rs9517483-A	0.301	2E-18		0.0181	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1344	chr13	99574523	99574524	rs7983462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q32.3		rs7983462-?	NR	8E-66				NR [~ 8900000] (imputed)	N
1344	chr13	99577632	99577633	rs10467260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q32.3		rs10467260-G	NR	7E-17		0.0121	[0.0094-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1344	chr13	99579195	99579195	rs35960614	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	13q32.3	NR	rs35960614-?	NR	5E-6		0.101811	[0.058-0.146] unit decrease	NR [13958389] (imputed)	N
1344	chr13	99584304	99584305	rs9517490	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		13q32.3	DOCK9	rs9517490-T	0.3	7E-7		0.015	[0.0091-0.0209] dioptres increase	NR [5901671] (imputed)	N
1344	chr13	99586237	99586238	rs7998317	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q32.3		rs7998317-?	NR	2E-66		0.0378023	[0.033-0.042] unit increase	Affymetrix [20259828] (imputed)	N
1344	chr13	99587928	99587929	rs2008411	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q32.3		rs2008411-?	NR	3E-66		0.0377825	[0.033-0.042] unit increase	Affymetrix [20259828] (imputed)	N
1344	chr13	99587928	99587929	rs2008411	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q32.3	DOCK9	rs2008411-C	0.30291	4E-13	(women)	0.0357727	[0.026-0.046] unit increase	NR [17166351] (imputed)	N
1344	chr13	99587928	99587929	rs2008411	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q32.3	DOCK9	rs2008411-C	0.301914	8E-29		0.0388638	[0.032-0.046] unit increase	NR [17166351] (imputed)	N
1344	chr13	99587928	99587929	rs2008411	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q32.3	DOCK9	rs2008411-C	0.300774	1E-16	(men)	0.0423794	[0.031-0.053] unit increase	NR [17166351] (imputed)	N
1344	chr13	99610145	99610146	rs9513519	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	13q32.3	NR	rs9513519-A	0.6168	2E-10		0.020658797	[0.014-0.027] unit increase	Illumina [9885498] (imputed)	N
1345	chr13	99624667	99624668	rs9557107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q32.3	DOCK9	rs9557107-T	0.463776	3E-9		0.0134418495	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1345	chr13	99635610	99635611	rs17785077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q32.3	DOCK9	rs17785077-A	0.102811	1E-9		0.022100722	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1345	chr13	99635610	99635611	rs17785077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q32.3		rs17785077-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1345	chr13	99639172	99639173	rs72651859	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q32.3		rs72651859-G	0.12	9E-12		6.83	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr13	99665511	99665512	rs11620380	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q32.3	DOCK9	rs11620380-A	0.1046	5E-12		0.027	[0.019-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1345	chr13	99665511	99665512	rs11620380	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	13q32.3	DOCK9	rs11620380-A	0.1046	2E-6		0.0183	[0.011-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1345	chr13	99673133	99673134	rs61968919	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q32.3		rs61968919-T	0.12	5E-15		7.83	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr13	99676717	99676718	rs79624091	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	13q32.3	NR	rs79624091-?		3E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
1345	chr13	99691184	99691185	rs61968944	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q32.3		rs61968944-C	0.12	8E-16		8.06	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr13	99705826	99705827	rs12428588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q32.3		rs12428588-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1345	chr13	99708569	99708570	rs201661014	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	13q32.3	NR	rs201661014-A	0.61	3E-14		1.4084507	[NR]	Illumina [747089]	N
1345	chr13	99738553	99738554	rs117633128	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q32.3	NR	rs117633128-A	0.1046	4E-14				NR [9056863] (imputed)	N
1345	chr13	99738553	99738554	rs117633128	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q32.3	NR	rs117633128-A	0.1046	5E-13				NR [9056863] (imputed)	N
1346	chr13	99760420	99760421	rs9513557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q32.3		rs9513557-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1346	chr13	99770327	99770328	rs55984493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q32.3		rs55984493-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1346	chr13	99770327	99770328	rs55984493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	13q32.3		rs55984493-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1346	chr13	99774646	99774647	rs11069349	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	13q32.3	intergenic	rs11069349-A	0.2066	5E-6		0.0677	[0.039-0.097] unit decrease	Illumina [2400000] (imputed)	N
1346	chr13	99776083	99776084	rs10459299	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	13q32.3	DOCK9-AS2	rs10459299-?		2E-6				NR [7405822] (imputed)	N
1346	chr13	99788427	99788428	rs55721405	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	13q32.3	NR	rs55721405-T	0.01719	3E-6		0.5292	[0.31-0.75] unit increase	Illumina [10677593] (imputed)	N
1346	chr13	99815897	99815898	rs9513573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q32.3		rs9513573-A	0.278892	1E-9		0.015303534	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1346	chr13	99815897	99815898	rs9513573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q32.3	NR	rs9513573-A	0.266557	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
1346	chr13	99815897	99815898	rs9513573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q32.3	NR	rs9513573-A	0.279129	3E-12		0.01542	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1346	chr13	99853912	99853916	rs34924388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q32.3	UBAC2	rs34924388-C	0.604241	2E-25		0.02385715	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr13	99853912	99853912	rs773704914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q32.3	NR	rs773704914-D	0.604223	4E-39		0.027402	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1346	chr13	99855123	99855124	rs2182885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	13q32.3	UBAC2	rs2182885-A	0.6078	2E-16		0.0299829	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1346	chr13	99855123	99855124	rs2182885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	13q32.3	UBAC2	rs2182885-A	0.6078	1E-12		0.0259031	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1346	chr13	99855123	99855124	rs2182885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	13q32.3	UBAC2	rs2182885-A	0.6079	1E-17		0.03118364	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1346	chr13	99855123	99855124	rs2182885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	13q32.3	UBAC2	rs2182885-A	0.6078	5E-15		0.02862923	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1347	chr13	99877470	99877471	rs7332672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	13q32.3	UBAC2	rs7332672-T	0.6171	1E-18		0.0321165	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1347	chr13	99907340	99907341	rs3742130	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q32.3	NR	rs3742130-G	0.78	6E-7	(EA)	1.0792593		Affymetrix, Illumina [~ 9000000] (imputed)	N
1347	chr13	99907340	99907341	rs3742130	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q32.3	NR	rs3742130-G	0.78	9E-13	(EA)	1.0902634		Affymetrix, Illumina [~ 9000000] (imputed)	N
1347	chr13	99907340	99907341	rs3742130	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q32.3	NR	rs3742130-G	0.78	1E-10	(EA)	1.0992312	[1.07-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1347	chr13	99934479	99934479	rs11406335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	13q32.3		rs11406335-TG	NR	3E-8		0.057	[0.037-0.077] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1347	chr13	99939900	99939901	rs7336872	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	13q32.3	UBAC2	rs7336872-T	0.84	6E-8		0.072	[0.047-0.097] unit increase	Affymetrix [9740198] (imputed)	N
1347	chr13	99950259	99950260	rs9513593	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	13q32.3	UBAC2, RN7SKP9	rs9513593-G	0.18	4E-8		1.12		Illumina, Perlegen [9113515] (imputed)	N
1347	chr13	99955797	99955798	rs1927729	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	13q32.3	CCR12P	rs1927729-A	0.795627	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1347	chr13	99956621	99956622	rs9557195	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	13q32.3	GPR18, GPR183, UBAC2	rs9557195-?		1E-6				Illumina [9725440] (imputed)	N
1347	chr13	99956621	99956622	rs9557195	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	13q32.3	GPR183, GPR18	rs9557195-T	0.772	2E-14		1.112	[1.075-1.151]	Affymetrix, Illumina [1230000] (imputed)	N
1347	chr13	99974491	99974492	rs1887704	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	13q32.3	UBAC2, DOCK9, TM9SF2	rs1887704-G	0.681	5E-13		1.124	[1.089-1.161]	Affymetrix [10894596] (imputed)	N
1347	chr13	99974491	99974492	rs1887704	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	13q32.3	UBAC2	rs1887704-?	NR	5E-20		1.075	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1347	chr13	99974491	99974492	rs1887704	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	13q32.3	UBAC2	rs1887704-G	NR	3E-17		1.063	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1347	chr13	99977751	99977752	rs9517686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q32.3		rs9517686-A	NR	2E-24		0.0183	[0.015-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1347	chr13	99977751	99977752	rs9517686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q32.3	NR	rs9517686-A	0.681175	2E-37				Affymetrix, Illumina [19872809] (imputed)	N
1347	chr13	99986237	99986238	rs59186511	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	13q32.3	FKSG29, GPR18, GPR183, LINC01232, MIR548AN, MIR623, TM9SF2, UBAC2, UBAC2-AS1	rs59186511-C	0.880089	4E-13		1.0714709	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
1347	chr13	99993680	99993681	rs59704974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	13q32.3		rs59704974-A	NR	9E-12		0.0601	[0.043-0.077] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1347	chr13	99994572	99994573	rs4772189	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	13q32.3	NR	rs4772189-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1348	chr13	100029463	100029464	rs34259893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	13q32.3		rs34259893-C	NR	2E-11		0.0672	[0.048-0.087] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1348	chr13	100029463	100029464	rs34259893	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	13q32.3	GPR183, TM9SF2	rs34259893-C	0.703330455686883	1E-16		0.05946135	[0.045-0.074] unit increase	Affymetrix [35186738] (imputed)	N
1348	chr13	100029463	100029464	rs34259893	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	13q32.3	UBAC2	rs34259893-C	0.6863779999999999	9E-19		1.0596404	[1.04612209898223-1.07333330109394]	NR [9572556] (imputed)	N
1348	chr13	100029931	100029932	rs7325747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	13q32.3	NR	rs7325747-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1348	chr13	100029931	100029932	rs7325747	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	13q32.3	MIR548AN	rs7325747-?	NR	4E-6		1.5384616	[1.27-1.89]	Illumina [at least 5000000] (imputed)	N
1348	chr13	100032345	100032346	rs912131	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	13q32.3		rs912131-A	0.296	4E-16				Affymetrix [10369434] (imputed)	N
1348	chr13	100032345	100032346	rs912131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q32.3	UBAC2	rs912131-G	0.702179	2E-28		0.026829107	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr13	100032345	100032346	rs912131	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	13q32.3	UBAC2, MIR623, FKSG29, GPR183, LINC01232, GPR18	rs912131-G	0.70387	3E-16		1.05852	[1.04-1.07]	Affymetrix [32463443] (imputed)	N
1348	chr13	100032345	100032346	rs912131	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	13q32.3	UBAC2	rs912131-A	0.2957	8E-17				Affymetrix [15688218] (imputed)	N
1348	chr13	100032345	100032346	rs912131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	13q32.3		rs912131-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1348	chr13	100032345	100032346	rs912131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q32.3		rs912131-?	NR	7E-33				NR [~ 8900000] (imputed)	N
1348	chr13	100036417	100036418	rs9557207	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q32.3	NR	rs9557207-?	NR	7E-7	(AA)	31.19	[29.13-33.25]	Illumina [905956]	N
1348	chr13	100036417	100036418	rs9557207	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	13q32.3	NR	rs9557207-?	NR	4E-13	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1348	chr13	100040653	100040654	rs9554587	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	13q32.3	UBAC2	rs9554587-?	NR	9E-10	(subset analysis)			Illumina [130052]	N
1348	chr13	100040978	100040979	rs7992229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	13q32.3		rs7992229-A	NR	1E-11		0.0598	[0.043-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1348	chr13	100040978	100040979	rs7992229	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	13q32.3	UBAC2	rs7992229-G	0.296065	7E-12		0.06777649	[0.048-0.087] unit decrease	Affymetrix [7288503] (imputed)	N
1348	chr13	100041737	100041738	rs7335046	21700618	Nan H	2011-06-23	Hum Mol Genet	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	13q32.3	UBAC2	rs7335046-G	0.12	3E-8		1.26	[1.18-1.34]	Affymetrix, Illumina [2318094] (imputed)	N
1348	chr13	100047503	100047504	rs9557210	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	13q32.3	CCR12P	rs9557210-G	NR	1E-6		1.09	[1.06-1.13]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1348	chr13	100047503	100047504	rs9557210	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	13q32.3	CCR12P	rs9557210-G	0.790859	3E-10		1.07	[1.05-1.09]	Affymetrix [7600000] (imputed)	N
1348	chr13	100058518	100058519	rs2390277	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	13q32.3	intergenic	rs2390277-A	0.359	1E-6		0.025	[0.015-0.035] unit decrease	Illumina [621723]	N
1348	chr13	100063228	100063229	rs72651032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q32.3		rs72651032-T	NR	1E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1348	chr13	100063854	100063855	rs77119468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q32.3	NR	rs77119468-A	NR	4E-9		0.0243	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1348	chr13	100070456	100070457	rs4771332	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	13q32.3	UBAC2	rs4771332-T	NR	8E-6		1.1841	NR	Illumina [up to 1244428] (imputed)	N
1348	chr13	100070456	100070457	rs4771332	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	13q32.3	NR	rs4771332-C	0.6868	6E-9		1.0384216	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1348	chr13	100070456	100070457	rs4771332	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	13q32.3	MIR548AN, TM9SF2	rs4771332-?	NR	6E-12		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1348	chr13	100070456	100070457	rs4771332	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	13q32.3	MIR548AN, TM9SF2	rs4771332-C	NR	5E-18		1.066	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1348	chr13	100072054	100072057	rs71118474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q32.3		rs71118474-T	0.21354	5E-14		0.020826036	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr13	100072054	100072057	rs71118474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q32.3		rs71118474-T	0.213524	2E-15		0.022061285	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1348	chr13	100073341	100073342	rs7987173	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	13q32.3	UBAC2, TM9SF2	rs7987173-C	0.54	8E-20				NR [> 9500000] (imputed)	N
1348	chr13	100081765	100081766	rs9585056	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	13q32.3	GPR183	rs9585056-C	0.24	3E-8		1.12		Illumina [135870]	N
1348	chr13	100085132	100085133	rs9517725	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	TM9SF2	rs9517725-?	NR	1E-6	(tyrosine)	0.2772521	[0.17-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1348	chr13	100086258	100086259	rs4772201	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	13q32.3	MIR548AN	rs4772201-A	0.83	1E-10		1.1		Illumina [161311]	N
1348	chr13	100087718	100087719	rs9300546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	13q32.3		rs9300546-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1348	chr13	100091299	100091300	rs1885889	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	13q32.3	UBAC2	rs1885889-G	NR	2E-13		0.87	[0.83-0.91]	Illumina [NR] (imputed)	N
1348	chr13	100091299	100091300	rs1885889	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	13q32.3	UBAC2, LINC01232	rs1885889-G	NR	8E-10		0.87	[0.82-0.92]	Illumina [5719137] (imputed)	N
1348	chr13	100110909	100110910	rs9557237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q32.3	NR	rs9557237-C	NR	8E-10		0.0326	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1348	chr13	100110909	100110910	rs9557237	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	13q32.3	TM9SF2	rs9557237-?	NR	1E-8		1.33	[0.86-1.8] unit increase	Affymetrix [2135235] (imputed)	N
1348	chr13	100112521	100112522	rs9517738	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	13q32.3	LINC01232	rs9517738-A	0.7024	3E-6		1.08	[1.05-1.12]	Affymetrix [33771858] (imputed)	N
1348	chr13	100114341	100114342	rs17656454	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	UBAC2	rs17656454-?	NR	7E-6	(glycocholate)	0.31726587	[0.18-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1349	chr13	100184790	100184791	rs150441681	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Free cholesterol in small HDL meal response (OrNLSr)	4,292 individuals	NA	13q32.3		rs150441681-G	0.036989919	4E-8		0.322863	[0.21-0.44] unit increase	Illumina [7701709] (imputed)	N
1349	chr13	100196951	100196952	rs9513627	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.3	TM9SF2	rs9513627-G	0.057	4E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
1349	chr13	100226813	100226814	rs76713055	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	13q32.3		rs76713055-A	NR	4E-6		0.033	[0.019-0.047] unit decrease	NR [7831927]	N
1349	chr13	100249480	100249481	rs17611025	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	TM9SF2	rs17611025-?	NR	3E-7	(glycocholate)	0.31072602	[0.19-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1349	chr13	100265403	100265404	rs61361629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q32.3		rs61361629-?	NR	1E-9		0.0204093	[0.014-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1350	chr13	100277142	100277143	rs2763948	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q32.3		rs2763948-T	0.4	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
1350	chr13	100288788	100288789	rs4564437	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q32.3	NR	rs4564437-G	0.4049	9E-10				NR [9056863] (imputed)	N
1350	chr13	100300941	100300942	rs2153672	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q32.3	CLYBL	rs2153672-C	0.900568	3E-13		0.0226619	[0.017-0.029] unit decrease	NR [13737936] (imputed)	N
1350	chr13	100332707	100332708	rs2027442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q32.3		rs2027442-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1350	chr13	100377958	100377959	rs74773246	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	13q32.3		rs74773246-?	NR	3E-6		0.8911904	[0.52-1.27] unit decrease	Illumina [9875426] (imputed)	N
1350	chr13	100377958	100377959	rs74773246	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	13q32.3		rs74773246-?	NR	9E-7		0.9851228	[0.59-1.38] unit decrease	Illumina [9842460] (imputed)	N
1351	chr13	100444737	100444738	rs138042987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	13q32.3		rs138042987-A	NR	2E-8		0.3049	[0.2-0.41] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1351	chr13	100444737	100444738	rs138042987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	13q32.3		rs138042987-A	0.020614116	2E-8		0.30489781	[0.2-0.41] unit increase	Illumina [13429980] (imputed)	N
1351	chr13	100456121	100456122	rs2390357	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	13q32.3	NR	rs2390357-G	0.354	2E-6		0.1529	[0.09-0.215] unit decrease	Illumina [10677593] (imputed)	N
1351	chr13	100456511	100456512	rs75327846	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q32.3	NR	rs75327846-?	NR	1E-6	(Native Hawaiian)	0.9315	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1351	chr13	100487619	100487620	rs34727243	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q32.3		rs34727243-?	NR	5E-6		1.1534009	[1.08494918647789-1.22617142803582]	Illumina [up to 7827597] (imputed)	N
1351	chr13	100493159	100493160	rs9513675	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q32.3	CLYBL	rs9513675-G	0.464	5E-6	(Hip circumference change )	0.03	[NR] cm/y increase	Illumina [899892]	N
1351	chr13	100518633	100518634	rs41281112	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	13q32.3	CLYBL	rs41281112-?	NR	9E-10		83.6	[56.90-110.30] pg/ml decrease	Illumina [1940245] (imputed)	N
1351	chr13	100521100	100521101	rs9557321	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	13q32.3	CLYBL	rs9557321-?		6E-8		1.73	[NR]	Illumina [452367]	N
1352	chr13	100542947	100542948	rs148390647	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 59)	2,595 Tanzanian ancestry individuals	NA	13q32.3		rs148390647-?	NR	1E-8				Illumina [NR] (imputed)	N
1352	chr13	100543050	100543051	rs9517906	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	13q32.3	CLYBL	rs9517906-?	NR	8E-6		1.3333333	[1.18-1.52]	NR [7738399] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	13q32.3		rs7333559-G	0.212	3E-10		0.015	[0.011-0.019] unit increase	Affymetrix [up to 90000000] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q32.3	ZIC5	rs7333559-A	0.7902	3E-9		0.015744165	[0.011-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q32.3	NR	rs7333559-A	0.783	1E-18		0.0116935	[0.0091-0.0143] unit decrease	NR [9732723] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q32.3	NR	rs7333559-A	0.783	6E-14		0.023212526	[0.017-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	13q32.3	NR	rs7333559-A	0.78	8E-15		0.013817	[0.01-0.017] unit increase	NR [9732723] (imputed)	N
1352	chr13	100546449	100546450	rs7333559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	13q32.3		rs7333559-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1352	chr13	100546788	100546789	rs1924105	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	13q32.3		rs1924105-?	NR	4E-6		1.24813	[1.15-1.34]	NR [673172]	N
1352	chr13	100548328	100548329	rs7322872	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	13q32.3	CLYBL	rs7322872-T	0.791	6E-9		0.0164	[0.011-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
1352	chr13	100549884	100549885	rs9517908	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q32.3		rs9517908-G	0.211	6E-12		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1352	chr13	100549884	100549885	rs9517908	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q32.3	NA	rs9517908-G		3E-8		0.0121601	[0.0078-0.0165] unit increase	Illumina [13288253] (imputed)	N
1352	chr13	100549884	100549885	rs9517908	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	13q32.3	LOC101927437	rs9517908-G		4E-9		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
1352	chr13	100555037	100555038	rs7992643	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	13q32.3	CLYBL	rs7992643-?	NR	5E-6	(count)			Perlegen [429981]	N
1352	chr13	100559122	100559123	rs2038695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	13q32.3	NR	rs2038695-C	0.44918	2E-8		0.00719174	[0.0046-0.0098] unit increase	Affymetrix [16578495] (imputed)	N
1352	chr13	100559122	100559123	rs2038695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	13q32.3	NR	rs2038695-C	0.449499	1E-12		0.0209761	[0.015-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1352	chr13	100559122	100559123	rs2038695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	13q32.3	NR	rs2038695-C	0.449248	5E-9		0.0113985	[0.0074-0.0154] unit increase	Affymetrix [16583148] (imputed)	N
1352	chr13	100559122	100559123	rs2038695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	13q32.3	NR	rs2038695-C	0.449673	3E-15		0.0227854	[0.017-0.029] unit increase	Affymetrix [16577424] (imputed)	N
1352	chr13	100564507	100564508	rs9517913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q32.3		rs9517913-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1352	chr13	100580684	100580685	rs61972394	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	13q32.3		rs61972394-?	NR	6E-6		3.159		Illumina [5932083] (imputed)	N
1352	chr13	100601326	100601327	rs7324365	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q32.3	LOC101927437	rs7324365-T	0.196623	1E-19		0.021119	[0.017-0.026] unit increase	NR [13737936] (imputed)	N
1352	chr13	100603258	100603259	rs9557349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q32.3		rs9557349-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1352	chr13	100608334	100608335	rs892254	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q32.3		rs892254-?	NR	2E-20		0.0232164	[0.018-0.028] unit increase	Affymetrix [20259828] (imputed)	N
1352	chr13	100638391	100638392	rs13542	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	13q32.3	NR	rs13542-?	NR	1E-6	(Meta-All, NSCL/P)			NR [497084]	N
1352	chr13	100648098	100648099	rs1347190	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Hyperopia	7,068 European ancestry cases, 6,844 European ancestry controls	1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls	13q32.3	ZIC2, ZIC5	rs1347190-?		7E-6				Affymetrix, Illumina [up to 3397980] (imputed)	N
1352	chr13	100648355	100648356	rs1108130	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q32.3	NR	rs1108130-A	0.212	2E-14	(Conditioned on chr13:100546450)	0.023943553	[0.018-0.03] unit increase	NR [~ 10000000] (imputed)	N
1352	chr13	100649196	100649197	rs17474781	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	13q32.3	NR	rs17474781-?	NR	7E-6		0.0790584	[0.044-0.114] unit decrease	NR [13958389] (imputed)	N
1353	chr13	100671868	100671869	rs7323466	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q32.3	intergenic	rs7323466-T	0.3488	6E-14		0.015	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1353	chr13	100671868	100671869	rs7323466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q32.3	NR	rs7323466-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1353	chr13	100671868	100671869	rs7323466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q32.3		rs7323466-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1353	chr13	100673615	100673616	rs724154	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q32.3	SLC15A1, DOCK9, CLYBL, ZIC2, PCCA, GGACT, TMTC4, NALCN	rs724154-?		2E-76				Affymetrix, Illumina [NR] (imputed)	N
1353	chr13	100689353	100689354	rs9585327	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	13q32.3	NR	rs9585327-?	NR	1E-6		0.132072	[0.079-0.185] unit increase	NR [13958389] (imputed)	N
1353	chr13	100689353	100689354	rs9585327	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q32.3	NR	rs9585327-G		2E-24		0.12	[0.1-0.14] unit increase	NR [NR]	N
1353	chr13	100689353	100689354	rs9585327	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	13q32.3	ZIC2, PCCA	rs9585327-?	NR	9E-25		1.0775862	[1.06-1.09]	Illumina [13762925] (imputed)	N
1353	chr13	100690003	100690003	rs368893443	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	13q32.3	NR	rs368893443-?	NR	1E-7		0.108774	[0.068-0.149] unit increase	NR [13958389] (imputed)	N
1353	chr13	100693001	100693002	rs9513696	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	13q32.3	NR	rs9513696-A	0.4444	2E-15		0.0558	[0.042-0.07] unit decrease	Illumina [~ 10600000] (imputed)	N
1353	chr13	100713193	100713194	rs7991062	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	13q32.3	NR	rs7991062-?		9E-15		0.0177381	[0.013-0.022] unit decrease	Affymetrix [19400418] (imputed)	N
1353	chr13	100717832	100717833	rs9517964	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q32.3	ZIC2, PCCA	rs9517964-T	0.589	4E-17		8.423	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1353	chr13	100729362	100729363	rs9557376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q32.3	NR	rs9557376-T	0.265	1E-17		0.0104768	[0.0081-0.0129] unit increase	NR [9732723] (imputed)	N
1353	chr13	100730029	100730030	rs9554664	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q32.3		rs9554664-C	0.747	4E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1353	chr13	100734523	100734524	rs59876823	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	13q32.3	NR	rs59876823-?	NR	7E-9	(Japanese)	0.9446	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1353	chr13	100745477	100745478	rs7986115	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	13q32.3	PCCA	rs7986115-A	0.636	1E-8		0.015178941	[0.0099-0.0204] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1353	chr13	100745477	100745478	rs7986115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.3		rs7986115-A	0.6332	4E-10	(conditional-joint)	0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1353	chr13	100753795	100753796	rs7317761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.3		rs7317761-C	0.7355	8E-12		0.0109	[0.0078-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1353	chr13	100753795	100753796	rs7317761	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q32.3	Intergenic	rs7317761-C	0.7355	1E-12	(MTAG)	0.0105	[0.0076-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1353	chr13	100756697	100756698	rs9585348	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	13q32.3	NR	rs9585348-T	0.367	6E-12		0.0104284	[0.0075-0.0134] unit decrease	NR [9732723] (imputed)	N
1353	chr13	100767340	100767341	rs9557386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q32.3	Intergenic	rs9557386-C	0.7359	8E-11	(MTAG)	0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr13	100818091	100818092	rs2184971	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	13q32.3	PCCA, ZIC2	rs2184971-G	0.44	2E-8		0.085	[0.056-0.114] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1354	chr13	100870059	100870060	rs141606281	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	13q32.3	NR	rs141606281-T	0.02957	2E-6		0.4203	[0.25-0.59] unit decrease	Illumina [10677593] (imputed)	N
1354	chr13	100895426	100895427	rs629509	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q32.3	PCCA	rs629509-?		6E-6				Illumina [4322238] (imputed)	N
1355	chr13	100936905	100936906	rs7981883	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q32.3		rs7981883-G	0.42	5E-22		9.66	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr13	100936905	100936906	rs7981883	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q32.3		rs7981883-G	0.42	1E-24		10.25	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr13	100936905	100936906	rs7981883	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q32.3	NR	rs7981883-G	0.3787	1E-17				NR [9056863] (imputed)	N
1355	chr13	100936905	100936906	rs7981883	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q32.3	NR	rs7981883-G	0.3787	1E-17				NR [9056863] (imputed)	N
1355	chr13	100947803	100947804	rs34909389	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	13q32.3	NR	rs34909389-T	0.03416	5E-6		0.383	[0.22-0.55] unit decrease	Illumina [10677593] (imputed)	N
1355	chr13	100974097	100974098	rs2390383	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 14)	3,566 European ancestry individuals	4,680 European ancestry individuals	13q32.3		rs2390383-A	0.411067194	2E-8				Illumina [7417619] (imputed)	N
1355	chr13	100976090	100976091	rs75870422	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	13q32.3	NR	rs75870422-C	0.02913	3E-6		0.4196	[0.24-0.59] unit decrease	Illumina [10677593] (imputed)	N
1355	chr13	101014451	101014452	rs757377682	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Coffee type: Instant coffee (UKB data field 1508_2)	200,087 European ancestry cases, 157,338 European ancestry controls	NA	13q32.3		rs757377682-C	6.147E-4	5E-10		0.51	[0.35-0.67] unit increase	NR [11842647] (imputed)	N
1355	chr13	101040312	101040313	rs542162517	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q32.3		rs542162517-?	NR	1E-6		1.2063314	[1.11908064586962-1.3003848398602]	Illumina [up to 7827597] (imputed)	N
1355	chr13	101043419	101043420	rs9513754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.3		rs9513754-T	0.2906	7E-10		0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1355	chr13	101043419	101043420	rs9513754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q32.3	Intergenic	rs9513754-T	0.2906	7E-10	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1355	chr13	101045358	101045359	rs2254579	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q32.3		rs2254579-C	0.39	4E-54		15.48	z score increase	Affymetrix [9061022] (imputed)	N
1355	chr13	101045358	101045359	rs2254579	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	13q32.3		rs2254579-?	NR	9E-16				NR [9705931] (imputed)	N
1356	chr13	101103513	101103514	rs9518075	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	13q32.3	NR	rs9518075-A		2E-12		0.09	[0.07-0.11] unit increase	NR [NR]	N
1356	chr13	101115619	101115620	rs3783170	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	13q32.3	PCCA	rs3783170-?	NR	5E-6		0.18	[0.10-0.25] unit increase	Illumina [> 2600000] (imputed)	N
1356	chr13	101142908	101142909	rs768476991	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	13q32.3		rs768476991-?	NR	4E-8				Illumina [19057004] (imputed)	N
1356	chr13	101151359	101151360	rs3783177	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	13q32.3	GGACT	rs3783177-T	0.7579	2E-9		0.014104667	[0.0095-0.0187] unit increase	Affymetrix [11514654] (imputed)	N
1356	chr13	101175663	101175664	rs837323	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	13q32.3	PCCA	rs837323-T	0.5115	3E-10		6.318	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1356	chr13	101179011	101179012	rs837333	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	13q32.3	NR	rs837333-C	0.4763	1E-8		1.029	[1.02-1.04]	NR [8968716] (imputed)	N
1356	chr13	101179011	101179012	rs837333	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	13q32.3	PCCA	rs837333-C	0.477	2E-9		0.0137	[0.0092-0.0182] unit increase	Illumina [~ 250000] (imputed)	N
1356	chr13	101180196	101180197	rs837335	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	13q32.3	NR	rs837335-C	0.5164	2E-8		0.04	[0.026-0.054] unit increase	Illumina [~ 10600000] (imputed)	N
1357	chr13	101189703	101189704	rs4772303	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q32.3	NR	rs4772303-T	0.413	6E-13		0.00794402	[0.0058-0.0101] unit increase	NR [9732723] (imputed)	N
1357	chr13	101193704	101193705	rs837305	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	13q32.3		rs837305-?	NR	6E-7		0.1	[0.063-0.137] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1357	chr13	101205427	101205428	rs837313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q32.3		rs837313-T	NR	3E-9		0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1357	chr13	101211188	101211189	rs117969561	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q32.3	Intergenic	rs117969561-T	NR	9E-7	(between families)	4.909	unit increase	Affymetrix [up to 15107142] (imputed)	N
1357	chr13	101212299	101212300	rs11616731	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	13q32.3		rs11616731-A	0.517	8E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1357	chr13	101223458	101223459	rs9300607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q32.3		rs9300607-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1357	chr13	101252634	101252635	rs12855717	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	13q32.3	NR	rs12855717-T	0.538	1E-9	(Conditioned on chr13:100648356, chr13:100546450)	0.015523679	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1357	chr13	101280290	101280291	rs2050686	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	PCCA	rs2050686-?	NR	3E-6	(PC 38:6)	0.22679889	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1357	chr13	101283218	101283219	rs9300612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	13q32.3		rs9300612-T	0.6944	3E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1357	chr13	101283218	101283219	rs9300612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q32.3	Intergenic	rs9300612-T	0.6944	2E-9	(MTAG)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1357	chr13	101287364	101287365	rs946838	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	PCCA	rs946838-?	NR	4E-6	(PC 40:6)	0.22298963	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1358	chr13	101319180	101319181	rs9513780	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q32.3	Intergenic	rs9513780-T	0.4627	3E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1358	chr13	101324299	101324300	rs1283198	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q32.3	NR	rs1283198-?	NR	2E-36				Affymetrix [NR]	N
1358	chr13	101333858	101333859	rs9518135	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q32.3	NR	rs9518135-?		8E-6				Illumina [4322238] (imputed)	N
1358	chr13	101395795	101395796	rs535535747	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	13q32.3		rs535535747-?	NR	3E-7				Illumina [19057004] (imputed)	N
1358	chr13	101400281	101400282	rs7991835	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	13q32.3		rs7991835-T	0.02414	9E-6		2.351	[1.611-3.429]	Affymetrix [7975321] (imputed)	N
1358	chr13	101402223	101402224	rs9513794	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	13q32.3	NALCN-AS1	rs9513794-T	0.326	8E-6				Affymetrix [525356]	N
1358	chr13	101424570	101424571	rs1621374	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	13q32.3		rs1621374-?	NR	1E-6		1.67	[1.37-2.02]	Affymetrix, Illumina [29826485] (imputed)	N
1358	chr13	101442750	101442751	rs115575545	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	13q32.3		rs115575545-C	0.978734	2E-6		0.0329989	[0.019-0.047] unit decrease	Illumina [13900000] (imputed)	N
1359	chr13	101521286	101521287	rs667502	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	13q32.3		rs667502-?	NR	6E-6		1.37675	[1.24-1.51]	NR [675173]	N
1359	chr13	101569770	101569771	rs57545017	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q32.3	NR	rs57545017-G	0.02265	2E-8	(ACO1)	0.7384	NR unit increase	Illumina [1671387] (imputed)	N
1360	chr13	101631431	101631432	rs9518259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	TMTC4	rs9518259-?	NR	5E-6	(glutamate)	0.17699133	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1360	chr13	101706192	101706193	rs8922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q32.3		rs8922-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1360	chr13	101708309	101708310	rs2044117	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q32.3	NALCN	rs2044117-?	NR	5E-7		1.3006	[NR]	Affymetrix [722112]	N
1361	chr13	101716365	101716366	rs7329632	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q32.3	ITGBL1	rs7329632-?	NR	7E-6	(uridine)	5.5083714	[3.1-7.92] unit increase	Affymetrix [at least 2500000] (imputed)	N
1361	chr13	101726312	101726313	rs9554752	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	13q32.3	NALCN	rs9554752-T	0.36	6E-6		1.65	[NR]	Affymetrix [703012]	N
1361	chr13	101733416	101733417	rs621332	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q32.3	NR	rs621332-?	NR	1E-6				Affymetrix [NR]	N
1361	chr13	101759339	101759340	rs9300648	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	13q33.1	NALCN	rs9300648-T	NR	6E-6		0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1361	chr13	101769545	101769546	rs658424	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	13q33.1	NALCN	rs658424-C	0.14	4E-6		0.26	unit decrease	Illumina [5600000] (imputed)	N
1361	chr13	101797033	101797034	rs17621578	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	13q33.1	NALCN	rs17621578-?		5E-7		1.488	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1361	chr13	101797842	101797843	rs116123555	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	13q33.1	NALCN	rs116123555-C	0.01	3E-7	(African American)	2.25	[1.39-3.11] unit increase	Illumina [up to 13042663] (imputed)	N
1361	chr13	101831747	101831748	rs79972364	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q33.1	NALCN, NALCN-AS1, LINC00411	rs79972364-C	NR	7E-6	(sleep duration, weekdays)	0.5811	[0.33-0.84] unit decrease	Affymetrix [7141204] (imputed)	N
1362	chr13	101869225	101869226	rs9513868	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	13q33.1	NALCN	rs9513868-?		7E-6				Illumina [2668805]	N
1362	chr13	101940642	101940643	rs7332702	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	13q33.1	NALCN	rs7332702-C	0.19	3E-6		0.24	unit decrease	Illumina [5600000] (imputed)	N
1363	chr13	102000944	102000945	rs7996217	22628157	Levine AJ	2012-05-24	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia	1,287 European ancestry HIV-infected male individuals	NA	13q33.1	NALCN	rs7996217-T	NR	7E-7	(SPEED)			Illumina [~ 2500000] (imputed)	N
1363	chr13	102051089	102051090	rs9557635	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	13q33.1	NALCN	rs9557635-A	0.146	9E-6	(Additive model)			Affymetrix [271817]	N
1363	chr13	102060075	102060076	rs1572591	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	13q33.1	ITGBL1, NALCN	rs1572591-?		3E-6				Affymetrix [545513]	N
1363	chr13	102100038	102100039	rs933089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q33.1		rs933089-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1364	chr13	102145559	102145560	rs1335587	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.1	ITGBL1	rs1335587-G	0.404	9E-6	(BMI z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1364	chr13	102202163	102202164	rs141357679	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ITGBL1	rs141357679-?	NR	1E-8	(female)	0.577266	[NR] unit increase	Affymetrix [NR] (imputed)	N
1364	chr13	102227494	102227495	rs9557704	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	13q33.1	ITGBL1	rs9557704-A	0.13	2E-7	(AA)	0.04	[0.03-0.06] unit decrease	Affymetrix [706791]	N
1366	chr13	102425709	102425710	rs118093682	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FGF14	rs118093682-?	NR	3E-8	(male)	0.884039	[NR] unit increase	Affymetrix [NR] (imputed)	N
1367	chr13	102533397	102533398	rs7330155	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	13q33.1	NR	rs7330155-T	0.41	8E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
1367	chr13	102553247	102553248	rs9557754	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	13q33.1	NR	rs9557754-G	0.62	8E-6		1.23	[0.70-1.76] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1368	chr13	102680125	102680126	rs11617740	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	13q33.1	FGF14	rs11617740-?	NR	7E-7	(Afro-Caribbean)	16.69	[5.53-51.97]	Illumina [2485249] (imputed)	N
1368	chr13	102718663	102718664	rs2607653	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		13q33.1	FGF14	rs2607653-?	NR	1E-7		0.023	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1368	chr13	102718663	102718664	rs2607653	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		13q33.1	FGF14	rs2607653-?	NR	4E-7		0.038	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1368	chr13	102759324	102759325	rs7997888	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	13q33.1	FGF14	rs7997888-A	0.04	2E-6	(female)	0.49	[0.29-0.69] unit increase	Illumina [7411206] (imputed)	N
1369	chr13	102781654	102781655	rs9557810	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	13q33.1	FGF14	rs9557810-?	NR	5E-7				Affymetrix [753382]	N
1369	chr13	102802425	102802426	rs72665334	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	13q33.1	FGF14	rs72665334-T	0.074	2E-8		4.3	[2.60-7.13]	Illumina [7759885] (imputed)	N
1369	chr13	102849264	102849265	rs544434	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	13q33.1	FGF14	rs544434-C	0.014	6E-6				Affymetrix [316934]	N
1369	chr13	102862430	102862431	rs1336702	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	13q33.1	NR	rs1336702-C	NR	1E-6	(AA)	0.169759	[0.1-0.24] unit increase	Affymetrix [up to 6007810] (imputed)	N
1369	chr13	102868107	102868108	rs1360983	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	13q33.1	FGF14	rs1360983-?	NR	1E-8		5.733	NR z score increase	Affymetrix [up to 6007810] (imputed)	N
1369	chr13	102878268	102878269	rs9513995	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q33.1	FGF14	rs9513995-T	0.74	2E-11		0.5	[0.36-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1369	chr13	102878268	102878269	rs9513995	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	13q33.1	FGF14	rs9513995-T	0.7386	1E-9		0.4686	[0.32-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1370	chr13	102972810	102972811	rs7986060	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	13q33.1	FGF14-IT1	rs7986060-G	0.687784286	2E-6		0.162665	[0.095-0.23] unit increase	Illumina [6952813] (imputed)	N
1370	chr13	103004966	103004967	rs9518710	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q33.1		rs9518710-?	NR	3E-8				NR [NR]	N
1370	chr13	103004966	103004967	rs9518710	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q33.1		rs9518710-?	NR	2E-8				NR [NR]	N
1370	chr13	103004966	103004967	rs9518710	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	13q33.1		rs9518710-?	NR	5E-8				NR [NR]	N
1371	chr13	103076492	103076493	rs2209842	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder or asymptomatic neurocognitive impairment)	155 African American asymptomatic neurocognitive impairment cases, 150 European ancestry asymptomatic neurocognitive impairment cases, 49 Hispanic asymptomatic neurocognitive impairment cases, 5 asymptomatic neurocognitive impairment cases, 30 African American mild neurocognitive disorder cases, 45 European ancestry mild neurocognitive disorder cases, 17 Hispanic mild neurocognitive disorder cases, 297 African American controls,  230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	13q33.1	NR	rs2209842-G		8E-6		1.671	[NR]	Affymetrix [NR]	N
1371	chr13	103087347	103087348	rs192260456	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs192260456-?	NR	1E-12	(Ep-CAM)	1.01562	[0.74-1.3] unit decrease	Illumina [11901634] (imputed)	N
1371	chr13	103093066	103093067	rs117565771	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	13q33.1	NR	rs117565771-?	NR	6E-6		0.3571	[0.2-0.51] unit decrease	Illumina [at least 560000] (imputed)	N
1371	chr13	103093704	103093705	rs1927358	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	13q33.1	WLS	rs1927358-?		7E-9				NR [7428630] (imputed)	N
1371	chr13	103093704	103093705	rs1927358	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	13q33.1	MITF	rs1927358-?		2E-8				NR [7428630] (imputed)	N
1372	chr13	103239419	103239420	rs9585949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q33.1		rs9585949-C	NR	1E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1372	chr13	103249220	103249221	rs7995964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.1	NR	rs7995964-G	NR	4E-12		0.0174	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1372	chr13	103256295	103256296	rs4772494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q33.1		rs4772494-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1372	chr13	103263860	103263861	rs9300750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q33.1	TPP2	rs9300750-A	0.586812	3E-11		0.014918999	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr13	103281582	103281583	rs182337697	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs182337697-?	NR	8E-13	(Ep-CAM)	1.02402	[0.74-1.3] unit decrease	Illumina [11901634] (imputed)	N
1373	chr13	103284766	103284767	rs8000920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.1	NR	rs8000920-T	0.621363	6E-13				Affymetrix, Illumina [22063850] (imputed)	N
1373	chr13	103284766	103284767	rs8000920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q33.1	NR	rs8000920-T	0.614549	4E-14		0.014615	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1373	chr13	103342639	103342640	rs9514041	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	13q33.1	NR	rs9514041-?	NR	1E-7	(alphaCz)	5.269	z score decrease	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
1373	chr13	103343427	103343428	rs9518810	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	13q33.1	METTL21C	rs9518810-?	NR	2E-6	(Alpha power, Cz)	0.174	[0.1-0.25] unit decrease	Illumina [527829]	N
1373	chr13	103348215	103348216	rs599976	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	13q33.1		rs599976-G	NR	9E-6		0.37	[0.24-1.22]	Illumina [9175654] (imputed)	N
1373	chr13	103350732	103350733	rs675828	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	13q33.1	METTL21C	rs675828-G	0.49	8E-6		1.3340448	[1.21-1.46]	Illumina [10736316] (imputed)	N
1373	chr13	103355326	103355327	rs603894	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	13q33.1	NR	rs603894-A	NR	8E-6	(EA)	0.03641	(-0.05232--0.02049) mg/dl decrease	Illumina [up to 509150]	N
1373	chr13	103362289	103362290	rs7323315	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs7323315-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103363891	103363892	rs7335798	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs7335798-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103364789	103364790	rs7319093	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs7319093-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103364937	103364938	rs7319746	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs7319746-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103365564	103365565	rs61965998	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs61965998-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103365705	103365706	rs9557921	34309201	Yu Y	2021-07-26	Mol Oncol	A comprehensive analysis of SNPs and CNVs identifies novel markers associated with disease outcomes in colorectal cancer.	Disease free survival in colorectal cancer	505 European ancestry individuals	NA	13q33.1		rs9557921-?	NR	5E-6				Illumina [4711309] (imputed)	N
1373	chr13	103411452	103411453	rs75217416	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q33.1	NR	rs75217416-?	NR	5E-6		4.74	[3.58-6.28]	Illumina [539000] (imputed)	N
1374	chr13	103479807	103479808	rs11367469	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q33.1	NR	rs11367469-A	0.8688	7E-7		0.1494	[0.09-0.208] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1374	chr13	103503790	103503791	rs4150258	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	13q33.1	ERCC5, BIVM-ERCC5	rs4150258-T	0.39	4E-6		6.97	NR mg increase	NR [NR] (imputed)	N
1374	chr13	103514458	103514459	rs4150314	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs4150314-?	NR	1E-14	(Ep-CAM)	1.09634	[0.82-1.37] unit decrease	Illumina [11901634] (imputed)	N
1374	chr13	103535827	103535828	rs1886087	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	13q33.1	NR	rs1886087-T	0.492	6E-6	(Jaccard metric)	4.3881283	NR z-score increase	Illumina [5293637] (imputed)	N
1375	chr13	103553566	103553567	rs79506257	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q33.1	ERCC5	rs79506257-G	0.952214	1E-9		0.0282748	[0.019-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1375	chr13	103617057	103617058	rs4142322	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	13q33.1		rs4142322-?	NR	5E-6				Affymetrix [710007]	N
1375	chr13	103663944	103663945	rs16961023	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		13q33.1	SLC10A2	rs16961023-C	0.985	5E-8	(liability model)	0.41	[0.27-0.55] unit decrease	NR [19725427] (imputed)	N
1376	chr13	103701689	103701690	rs56398830	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	13q33.1	SLC10A2	rs56398830-?		2E-12		1.36	[1.25-1.49]	Affymetrix, Illumina [43000000] (imputed)	N
1376	chr13	103701689	103701690	rs56398830	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs56398830-?	NR	3E-17	(Ep-CAM)	1.01445	[0.78-1.25] unit decrease	Illumina [11901634] (imputed)	N
1376	chr13	103701689	103701690	rs56398830	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	epithelial cell adhesion molecule levels	up to 653 individuals	up to 317 individuals	13q33.1	SLC10A2	rs56398830-A	0.047734	1E-15		0.94	[0.7-1.18] unit decrease	Illumina [4840842] (imputed)	N
1376	chr13	103710241	103710242	rs157380	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	13q33.1	NR	rs157380-A	0.3311	5E-7		1.0352	[0.63-1.44] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1376	chr13	103716768	103716769	rs10508101	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	13q33.1		rs10508101-?	NR	8E-6		1.07278	[1.04-1.1]	NR [685523]	N
1376	chr13	103716822	103716823	rs16961277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	13q33.1		rs16961277-G	NR	1E-9		0.0757	[0.051-0.1] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1376	chr13	103718307	103718308	rs55971546	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	13q33.1	SLC10A2	rs55971546-C	0.968925	4E-12	(glycodeoxycholate sulfate)	0.445	[0.32-0.57] unit decrease	Illumina [13039987] (imputed)	N
1377	chr13	103867103	103867104	rs912969	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	13q33.1	intergenic	rs912969-?	0.07	8E-6	(SMKDU)	0.14	[NR] years decrease	Illumina [~ 518000]	N
1377	chr13	103876860	103876861	rs113966252	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs113966252-?	NR	2E-14	(Ep-CAM)	1.10448	[0.82-1.39] unit decrease	Illumina [11901634] (imputed)	N
1377	chr13	103928006	103928007	rs1529276	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	13q33.1	intergenic	rs1529276-?	NR	2E-6				Affymetrix [70897]	N
1378	chr13	103969490	103969491	rs4771450	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	13q33.1	NR	rs4771450-?	NR	2E-6		0.23	[NR] mg/dl decrease in uric acid levels	Affymetrix [361034]	N
1378	chr13	103975516	103975517	rs189991880	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q33.1	LINC01309	rs189991880-A	0.0011	5E-6		1.5924	[0.91-2.27] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1378	chr13	103975516	103975517	rs189991880	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	13q33.1	LINC01309	rs189991880-A	0.0011	5E-6		1.5924	[0.91-2.27] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1378	chr13	103978261	103978262	rs7333033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.1	ERCC5	rs7333033-?	NR	2E-6	(kynurenine)	0.17976749	[0.11-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1378	chr13	104060086	104060087	rs9586179	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	13q33.1	SLC10A2	rs9586179-T	NR	4E-7		0.05	[NR] % increase	Affymetrix, Illumina [NR]	N
1378	chr13	104062177	104062178	rs16962242	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	13q33.1	NR	rs16962242-?	NR	9E-6	(AA)	18.29	[16.57-20.01]	Illumina [905956]	N
1379	chr13	104081601	104081602	rs191466475	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs191466475-?	NR	2E-13	(Ep-CAM)	1.44739	[1.06-1.83] unit decrease	Illumina [11901634] (imputed)	N
1379	chr13	104090165	104090166	rs1571628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q33.1		rs1571628-C	NR	3E-8		0.0139	[0.009-0.0188] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1379	chr13	104090847	104090848	rs9514131	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q33.1	NA	rs9514131-T	0.1289	3E-9		0.0155	[0.01-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1379	chr13	104091544	104091545	rs583464	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	13q33.1	intergenic	rs583464-?	NR	3E-6	(SF2)			Affymetrix [5476100] (imputed)	N
1379	chr13	104091755	104091756	rs61966983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q33.1		rs61966983-A	NR	3E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1379	chr13	104092349	104092350	rs72665129	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q33.1	NR	rs72665129-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1379	chr13	104092349	104092350	rs72665129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q33.1		rs72665129-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1379	chr13	104100525	104100526	rs9554958	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	13q33.1	SLC10A2	rs9554958-A	NR	1E-6		8.9266	[5.4-12.46] unit decrease	Illumina [6097251] (imputed)	N
1379	chr13	104101131	104101132	rs16962387	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	13q33.1	ATP6V1G1P7	rs16962387-C	0.861847143	3E-6		0.215377	unit increase	Illumina [6969139] (imputed)	N
1379	chr13	104143611	104143612	rs6491750	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	13q33.1	SLC10A2	rs6491750-C	0.0693	5E-6		1.87	[1.428-2.448]	Affymetrix, Illumina [14074516] (imputed)	N
1379	chr13	104186918	104186919	rs16962638	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	13q33.1	intergenic	rs16962638-C	0.11	6E-6	(HOMA-IR)	15.0	[8.00 - 22.00] % increase	Affymetrix [872243]	N
1379	chr13	104188614	104188615	rs10508115	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.1	NR	rs10508115-?	NR	4E-10				Affymetrix [NR]	N
1380	chr13	104311155	104311156	rs7989397	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q33.1	Intergenic	rs7989397-?	NR	8E-6		1.957	[NR]	Affymetrix [492217] (imputed)	N
1381	chr13	104365225	104365226	rs1772557	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q33.1	Intergenic	rs1772557-?		4E-6		1.34	[1.18-1.52]	Illumina [7645193] (imputed)	N
1381	chr13	104374727	104374728	rs1772560	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.1	ERCC5	rs1772560-?	NR	7E-6	(PC 40:6)	0.56776386	[0.32-0.82] unit increase	Affymetrix [at least 2500000] (imputed)	N
1381	chr13	104462526	104462527	rs9554995	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	13q33.1	NR	rs9554995-?	NR	8E-6		0.5024	[0.2-0.8]	Illumina [NR] (imputed)	N
1382	chr13	104467028	104467029	rs80112458	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q33.1	intergenic	rs80112458-A	0.0371696356473622	5E-6	(G_unclassified_P_Firmicutes_HB)	0.850791	[0.49-1.22] unit decrease	Illumina [7711310] (imputed)	N
1382	chr13	104484342	104484343	rs146209479	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.1	NR	rs146209479-?	NR	5E-13	(Ep-CAM)	1.94761	[1.42-2.48] unit decrease	Illumina [11901634] (imputed)	N
1382	chr13	104520137	104520138	rs9514191	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	13q33.1	LINC01309, DAOA-AS1	rs9514191-C	0.312	3E-8		0.034	[0.022-0.046] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1382	chr13	104525389	104525390	rs2184795	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q33.1	NR	rs2184795-?		2E-6				Illumina [4322238] (imputed)	N
1382	chr13	104540198	104540199	rs9586307	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	13q33.1	AL136524.1	rs9586307-?	NR	2E-6		0.4	[0.24-0.56] unit decrease	Illumina [7870334] (imputed)	N
1382	chr13	104581378	104581379	rs60181108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.1	NR	rs60181108-T	0.02265	4E-9	(GSTK1)	0.205	NR unit increase	Illumina [1671387] (imputed)	N
1383	chr13	104606185	104606186	rs2785504	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.1	NR	rs2785504-T	0.01045	1E-8	(HINT2)	0.1009	NR unit increase	Illumina [1671387] (imputed)	N
1383	chr13	104628384	104628385	rs114499642	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Reasoning	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	13q33.1	intergenic	rs114499642-G		6E-8		2.6	[NR] unit decrease	Illumina [NR] (imputed)	N
1383	chr13	104677938	104677939	rs2806747	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	13q33.1	NR	rs2806747-?		1E-6		1.97	[NR]	Illumina [NR] (imputed)	N
1384	chr13	104749835	104749836	rs149773673	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	13q33.1	NR	rs149773673-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1384	chr13	104810436	104810437	rs12873707	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	5,461 European ancestry mothers	NA	13q33.1	LINC01309, DAOA-AS1	rs12873707-C	NR	4E-7		0.165	[0.1-0.23] unit increase	Illumina [7360988] (imputed)	N
1384	chr13	104810436	104810437	rs12873707	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	5,461 European ancestry females, 1,338 females	NA	13q33.1	DAOA-AS1, LINC01309	rs12873707-C	NR	9E-8		0.159	[0.1-0.22] unit increase	Illumina [up to 7373492] (imputed)	N
1384	chr13	104856787	104856788	rs7337788	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	13q33.2	NR	rs7337788-C	NR	2E-6		0.05142	[0.03-0.073] unit decrease	Illumina [~ 540852]	N
1385	chr13	104966769	104966770	rs7983024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.2	SLC10A2	rs7983024-?	NR	2E-6	(uric acid)	0.21843904	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1385	chr13	104972235	104972236	rs182358431	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	13q33.2		rs182358431-G	NR	4E-7		0.4614	[0.28-0.64] increase	Illumina [6334277] (imputed)	N
1386	chr13	105015130	105015131	rs112654766	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.2	NR	rs112654766-?	NR	1E-11	(Ep-CAM)	1.00703	[0.71-1.3] unit decrease	Illumina [11901634] (imputed)	N
1386	chr13	105033062	105033063	rs16964673	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_physician)	881 Dutch ancestry individuals	246 Dutch ancestry individuals	13q33.2		rs16964673-G	NR	7E-6		0.13735364	[0.077-0.197] decrease	Illumina [6334277] (imputed)	N
1386	chr13	105039145	105039146	rs17450420	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	13q33.2	SLC10A2	rs17450420-?	0.04	5E-8		1.7	[1.41-2.06]	NR [NR]	N
1386	chr13	105045291	105045292	rs11617974	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	13q33.2	NR	rs11617974-C	0.3288	4E-6		1.22	[1.12-1.33]	Illumina [64973696] (imputed)	N
1386	chr13	105052305	105052306	rs117642896	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q33.2	NR	rs117642896-?	NR	9E-9		5390.3027	NR unit decrease	Illumina [2379855]	N
1386	chr13	105078156	105078157	rs184940006	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q33.2	Intergenic	rs184940006-G	1.0	5E-8	(AA)	0.577	unit increase	Illumina [NR] (imputed)	N
1386	chr13	105082110	105082111	rs7986969	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	13q33.2		rs7986969-A	NR	4E-7		1.04331		Affymetrix, Illumina [62056310] (imputed)	N
1386	chr13	105088916	105088917	rs117556572	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	13q33.2	NR	rs117556572-C		3E-6		0.5102	[0.29-0.73] SD units increase	NR [10700000] (imputed)	N
1386	chr13	105092528	105092529	rs1360189	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	13q33.2		rs1360189-?	NR	2E-10				Illumina [1128286]	N
1387	chr13	105137528	105137529	rs4772629	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	13q33.2	NR	rs4772629-T	0.1813	3E-6		0.79	[0.72-0.87]	Illumina [64973696] (imputed)	N
1387	chr13	105144447	105144448	rs9558301	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	13q33.2	NR	rs9558301-T	0.594	2E-8		0.00614189	[0.004-0.0083] unit increase	NR [9732723] (imputed)	N
1387	chr13	105153815	105153816	rs1434351	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	13q33.2	NR	rs1434351-T	0.3535	3E-6		1.22	[1.12-1.32]	Illumina [64973696] (imputed)	N
1388	chr13	105275929	105275930	rs7337127	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour and bipolar disorder	398 European ancestry cases, 1,811 European ancestry controls	NA	13q33.2	intergenic	rs7337127-T	0.15	3E-7		1.754386	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1388	chr13	105278210	105278211	rs114995101	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	13q33.2	NR	rs114995101-G	0.02	5E-7		2.42	[1.8-3.17]	Illumina [64973696] (imputed)	N
1388	chr13	105329740	105329741	rs76611431	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.2	NR	rs76611431-C	0.01045	1E-10	(PLD3)	0.03223	NR unit increase	Illumina [1671387] (imputed)	N
1388	chr13	105359643	105359644	rs323473	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	13q33.2	Intergenic	rs323473-?		3E-6		1.498	[NR]	Affymetrix [492217] (imputed)	N
1388	chr13	105359643	105359644	rs323473	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	13q33.2	Intergenic	rs323473-?		4E-6		1.578	[NR]	Affymetrix [492217] (imputed)	N
1389	chr13	105414900	105414901	rs76357549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.2	NR	rs76357549-G	0.05401	3E-8	(LTF)	0.1581	NR unit increase	Illumina [1671387] (imputed)	N
1390	chr13	105597970	105597971	rs187119650	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	13q33.2	NR	rs187119650-?	NR	2E-11	(Ep-CAM)	2.31968	[1.64-3] unit decrease	Illumina [11901634] (imputed)	N
1391	chr13	105703263	105703264	rs74690524	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q33.2	NR	rs74690524-?	NR	1E-6		0.020279	[0.012-0.029] unit increase	Affymetrix [805426] (imputed)	N
1392	chr13	105798726	105798727	rs9558487	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	13q33.2	NR	rs9558487-?		3E-7		0.63	[0.53-0.75]	Illumina [539473] (imputed)	N
1392	chr13	105806953	105806954	rs3007243	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	13q33.2	intergenic	rs3007243-G	0.959	2E-6		0.8386	[0.5-1.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1392	chr13	105807022	105807023	rs16965962	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	13q33.2	intergenic	rs16965962-T	NR	3E-7	(AA - GSE)			Affymetrix [421789]	N
1392	chr13	105807022	105807023	rs16965962	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	13q33.2	intergenic	rs16965962-T	0.03	3E-7	(EA + AA - GSE)			Affymetrix [421789]	N
1392	chr13	105811197	105811198	rs75065922	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	13q33.2		rs75065922-A	0.0101	4E-7		4.89	[2.646-9.037]	Affymetrix [7975321] (imputed)	N
1392	chr13	105835169	105835170	rs16966085	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.2	DAOA	rs16966085-A	0.096	3E-6	(HRmax )	0.04	[NR] bpm increase	Illumina [899892]	N
1393	chr13	105908001	105908002	rs7337397	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	13q33.2	NR	rs7337397-?	NR	8E-6		0.229348	[0.13-0.33] unit increase	NR [13958389] (imputed)	N
1393	chr13	105927431	105927432	rs4771493	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	13q33.2	LOC105370344	rs4771493-?	NR	9E-6		5.24	[2.97-7.51] unit increase	Illumina [285340]	N
1393	chr13	106007554	106007555	rs7332766	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	13q33.2	NR	rs7332766-?	NR	3E-6	(AA)	1.4925373	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1394	chr13	106065077	106065078	rs12865469	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q33.2	NR	rs12865469-?	NR	8E-32		11.743	NR z score decrease	Illumina [at least 830937] (imputed)	N
1394	chr13	106067919	106067920	rs17655948	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	13q33.2	DAOA	rs17655948-T	0.64	7E-6	(Age 20-60 years)	0.1638	[0.093-0.234] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1394	chr13	106074895	106074896	rs2147479	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	13q33.2	LINC01309, DAOA-AS1	rs2147479-T	0.66	4E-6		1.19	[1.10-1.29]	Affymetrix, Illumina [12148595] (imputed)	N
1394	chr13	106096811	106096812	rs11618212	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		13q33.2	intergenic	rs11618212-?	0.213	5E-12			[NR]	Affymetrix, Illumina [152234]	N
1394	chr13	106100392	106100393	rs7331194	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	13q33.2	DAOA	rs7331194-?		4E-6	(PC2)	0.0588	[NR] unit increase	Illumina [4167292] (imputed)	N
1394	chr13	106151149	106151150	rs192381057	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	13q33.2	NR	rs192381057-A	0.007107	3E-6		0.8382	[0.49-1.19] unit increase	Illumina [10677593] (imputed)	N
1395	chr13	106205802	106205803	rs80104239	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.2	NR	rs80104239-A	0.01394	3E-8	(WARS)	0.05627	NR unit increase	Illumina [1671387] (imputed)	N
1395	chr13	106220786	106220787	rs16966870	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	13q33.2	NR	rs16966870-?	NR	2E-6		1.6639	[1.03-2.3] unit increase	Illumina [at least 560000] (imputed)	N
1395	chr13	106248032	106248033	rs16966918	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	13q33.2	NR	rs16966918-A	NR	5E-6	(phenotype 1)	4.01	[NR]	Illumina [> 8000000] (imputed)	N
1395	chr13	106248032	106248033	rs16966918	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	13q33.2	NR	rs16966918-A	NR	5E-6	(phenotype 3)	4.01	[NR]	Illumina [> 8000000] (imputed)	N
1395	chr13	106249308	106249309	rs1549059	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.2	DAOA	rs1549059-A	0.458	4E-6	(Energy balance )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1395	chr13	106263704	106263705	rs1549061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	13q33.2		rs1549061-C	NR	5E-12		0.0762	[0.055-0.098] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1395	chr13	106264082	106264083	rs1549063	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	13q33.2	NR	rs1549063-T	0.36	2E-9		0.091	[0.062-0.12] unit increase	Affymetrix [10972371] (imputed)	N
1396	chr13	106316977	106316978	rs9586939	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q33.2	NR	rs9586939-?	NR	8E-6		1945.481	NR unit increase	Illumina [2379855]	N
1396	chr13	106369082	106369082	rs202209255	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	13q33.2	LINC00343	rs202209255-TC	0.036	2E-6		1.81	[1.32-2.48]	Affymetrix [up to 27494467] (imputed)	N
1396	chr13	106392363	106392364	rs7993290	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	13q33.2	NR	rs7993290-?		6E-6				Illumina [892589]	N
1396	chr13	106392578	106392579	rs115694210	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q33.2	Intergenic	rs115694210-A	NR	1E-7	(between families)	5.336	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1396	chr13	106399306	106399307	rs61968809	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.2		rs61968809-A	0.09784	4E-8		0.2565	[0.16-0.35] unit increase	Illumina [17945511] (imputed)	N
1396	chr13	106400524	106400525	rs56057401	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q33.2	LINC00343	rs56057401-C	0.06568129	7E-6		1.2347617	[1.125999644-1.354029409]	Illumina [10439017] (imputed)	N
1396	chr13	106401531	106401532	rs9519778	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.2	EFNB2	rs9519778-?	NR	4E-6	(SM 24:0)	0.16852716	[0.097-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1396	chr13	106402819	106402820	rs10508164	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	13q33.2	LINC00343	rs10508164-A	0.20	7E-6		0.181	[0.1-0.26] unit decrease	Illumina [6380737] (imputed)	N
1396	chr13	106425478	106425479	rs138549626	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	13q33.2		rs138549626-C	0.985731	2E-8		0.0999651	[0.065-0.135] unit increase	NR [11722792] (imputed)	N
1397	chr13	106439365	106439366	rs7327673	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	13q33.2	NR	rs7327673-?		4E-6	(females)			Illumina [1211988] (imputed)	N
1397	chr13	106446476	106446477	rs2025924	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	13q33.2	LINC00343	rs2025924-?	NR	6E-7				Illumina [7401356] (imputed)	N
1397	chr13	106446476	106446477	rs2025924	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	13q33.2	LINC00343	rs2025924-?	NR	3E-7				Illumina [7401356] (imputed)	N
1397	chr13	106446476	106446477	rs2025924	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	13q33.2	LINC00343	rs2025924-?	NR	4E-7		0.8	[NR] unit increase	Illumina [1365181]	N
1397	chr13	106447830	106447831	rs7988446	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	13q33.2	NR	rs7988446-?	NR	1E-5				Illumina [7401356] (imputed)	N
1397	chr13	106495999	106496000	rs4771506	29739359	Graham PS	2018-05-08	BMC Med Genet	Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy.	Diabetic macular edema in type 2 diabetes	270 European ancestry cases, 435 European ancestry controls	NA	13q33.2	LINC00343	rs4771506-C	0.263	7E-6		1.97	[1.46-2.64]	Illumina [617130]	N
1398	chr13	106583539	106583540	rs9587024	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs9587024-T	NR	2E-12		7.007	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106589140	106589141	rs7336109	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	13q33.2	DAOA	rs7336109-T	0.29	9E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1398	chr13	106593391	106593392	rs17514375	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs17514375-T	NR	4E-8		5.511	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106596118	106596119	rs2253855	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	13q33.2		rs2253855-?	NR	1E-8				NR [7857346] (imputed)	N
1398	chr13	106596718	106596719	rs488248	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	13q33.2	LOC728192	rs488248-T	0.795	3E-6	(Allelic model)	2.896	[1.802-4.665]	Illumina [733202]	N
1398	chr13	106604470	106604471	rs2476729	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs2476729-A	NR	2E-9		5.981	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106616282	106616283	rs7993710	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs7993710-T	NR	9E-10		6.134	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106617232	106617233	rs9558651	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q33.2	SNORA25	rs9558651-A	NR	1E-8		5.698	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1398	chr13	106631573	106631574	rs942353	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs942353-T	NR	9E-16		8.041	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106631573	106631574	rs942353	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q33.2	SNORA25	rs942353-T	NR	1E-8		5.672	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1398	chr13	106631573	106631574	rs942353	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q33.2	SNORA25	rs942353-T	NR	2E-8		0.016748335	[0.011-0.023] unit increase	Affymetrix [NR]	N
1398	chr13	106632498	106632499	rs1924399	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs1924399-T	NR	8E-9		5.771	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106635350	106635351	rs2252003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q33.2	Intergenic	rs2252003-T	0.7436	5E-15	(MTAG)	0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr13	106635350	106635351	rs2252003	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	13q33.2	SNORA25	rs2252003-?	NR	3E-11		6.673	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1398	chr13	106635350	106635351	rs2252003	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	13q33.2	SNORA25	rs2252003-?	NR	2E-10		6.367	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1398	chr13	106635504	106635505	rs2478295	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q33.2	SNORA25	rs2478295-C	NR	8E-13		7.17	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1398	chr13	106635518	106635519	rs2476733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q33.2	Intergenic	rs2476733-T	0.2579	8E-13	(MTAG)	0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr13	106635518	106635519	rs2476733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q33.2	Intergenic	rs2476733-T	0.2579	9E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1398	chr13	106637456	106637457	rs2251732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q33.2	Intergenic	rs2251732-T	0.2561	2E-11	(MTAG)	0.0127	[0.009-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1398	chr13	106638738	106638739	rs2478286	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs2478286-C	NR	2E-16		8.246	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106639855	106639856	rs2251499	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	13q33.2	SNORA25	rs2251499-?	NR	6E-9		0.013049886	[0.0086-0.0175] unit increase	NR [7306098]	N
1398	chr13	106639855	106639856	rs2251499	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	13q33.2	NR	rs2251499-T	0.25	8E-12		6.85	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1398	chr13	106639855	106639856	rs2251499	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	13q33.2	SNORA25	rs2251499-?	NR	1E-10		6.457	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1398	chr13	106639855	106639856	rs2251499	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	13q33.2	LINC00343, LINC00460	rs2251499-T	0.2567	4E-9	(Adults)	5.866	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1398	chr13	106639855	106639856	rs2251499	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	13q33.2	LINC00343, LINC00460	rs2251499-T	0.2567	3E-10		6.313	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1398	chr13	106640323	106640324	rs2478281	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	13q33.2	NR	rs2478281-G	0.258449	5E-12		0.049703777	[0.036-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1398	chr13	106640323	106640324	rs2478281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	13q33.2	Intergenic	rs2478281-A	0.7431	3E-12		0.0227	[0.016-0.029] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1398	chr13	106640633	106640634	rs2265097	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	13q33.2	SNORA25	rs2265097-T	NR	3E-12		0.023376854	[0.017-0.03] unit increase	Affymetrix [NR]	N
1398	chr13	106644321	106644322	rs2248179	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	13q33.2	NR	rs2248179-A	NR	7E-11		6.517	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1398	chr13	106647577	106647578	rs4772729	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q33.2	SNORA25	rs4772729-C	NR	1E-8		5.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1398	chr13	106651660	106651661	rs4996815	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q33.2	DAOA	rs4996815-?	NR	1E-7		1.2764	[NR]	Affymetrix [722112]	N
1398	chr13	106657919	106657920	rs140008767	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	13q33.2	NR	rs140008767-G	0.05456	4E-7		0.3317	[0.2-0.46] unit increase	Illumina [10677593] (imputed)	N
1399	chr13	106703619	106703620	rs17460862	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q33.2	NR	rs17460862-?		9E-6				Illumina [4322238] (imputed)	N
1399	chr13	106743243	106743244	rs188019015	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	13q33.2	NR	rs188019015-T	NR	7E-6	(Hispanic)	9.33	[5.35-13.31] unit increase	Affymetrix [14000000] (imputed)	N
1399	chr13	106768382	106768383	rs61974891	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs61974891-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106772807	106772807	rs142149611	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs142149611-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1399	chr13	106781780	106781781	rs9555222	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs9555222-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106783728	106783729	rs9519965	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs9519965-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106785264	106785265	rs1372791	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	13q33.2	LOC341604	rs1372791-A		4E-7	(EA)			Illumina [NR]	N
1399	chr13	106786720	106786721	rs11069629	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs11069629-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106786760	106786761	rs7982010	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs7982010-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106797669	106797670	rs2893249	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs2893249-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106806344	106806345	rs9558689	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs9558689-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106810380	106810381	rs7338392	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	13q33.2		rs7338392-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1399	chr13	106816233	106816233	rs34833487	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	13q33.2	NR	rs34833487-CT	0.1304	8E-6		0.242	[0.15-0.33] unit increase	Illumina [10677593] (imputed)	N
1399	chr13	106821579	106821580	rs9558696	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	13q33.2		rs9558696-T	0.097317597	1E-9				Illumina [7417619] (imputed)	N
1400	chr13	106846272	106846273	rs59264502	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	13q33.2	Intergenic	rs59264502-A	0.46	2E-6		0.37	[0.21-0.53] unit increase	Illumina [~ 31000000] (imputed)	N
1400	chr13	106927119	106927120	rs9514523	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	13q33.2	intergenic	rs9514523-T	0.1871	9E-6		0.0386	NR unit decrease	NR [NR] (imputed)	N
1401	chr13	106967226	106967227	rs354419	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q33.2	NA	rs354419-G		2E-8		0.0108239	[0.0071-0.0146] unit decrease	Illumina [13288253] (imputed)	N
1401	chr13	107018152	107018153	rs1477921	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.2	FLJ10154	rs1477921-?	NR	5E-6	(TAG 54:7)	0.17887808	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1401	chr13	107037343	107037344	rs17254590	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance in more-fat diet	10,707 European ancestry women	NA	13q33.2	LINC00460	rs17254590-?	NR	9E-9		2.67	[NR]	NR [18717781] (imputed)	N
1401	chr13	107037343	107037344	rs17254590	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance	11,794 European ancestry women	NA	13q33.2	LINC00460	rs17254590-?	NR	2E-8		2.52	[NR]	NR [18717781] (imputed)	N
1401	chr13	107045073	107045074	rs12866352	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	13q33.2	EFNB2	rs12866352-A	0.02	8E-7	(women)	219.72	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1401	chr13	107050101	107050102	rs9587128	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.2	NR	rs9587128-?	NR	1E-7				Affymetrix [NR]	N
1401	chr13	107061427	107061428	rs12857574	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	13q33.3	LOC728192, LOC341604	rs12857574-A	0.3397	9E-6		4.441	z score increase	Affymetrix, Illumina [up to 1994688]	N
1401	chr13	107063041	107063042	rs11839053	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	13q33.3	EFNB2	rs11839053-C	0.02	1E-6				Illumina [7347414] (imputed)	N
1401	chr13	107075011	107075012	rs141629209	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q33.3	Intergenic	rs141629209-?		4E-7		1.17	[1.10-1.25]	Illumina [7645193] (imputed)	N
1401	chr13	107075011	107075012	rs141629209	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	13q33.3	Intergenic	rs141629209-?		9E-8		4.67	[2.65-8.22]	Illumina [7645193] (imputed)	N
1401	chr13	107082903	107082904	rs1973985	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	13q33.3	EFNB2	rs1973985-A		1E-6		0.443	[NR] unit decrease	Illumina [1067955] (imputed)	N
1402	chr13	107091073	107091074	rs116831470	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q33.3	RPL35P7	rs116831470-?		3E-6				Illumina [4322238] (imputed)	N
1402	chr13	107157708	107157709	rs2391331	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	13q33.3	EFNB2	rs2391331-?	NR	7E-6				Affymetrix [5908111] (imputed)	N
1402	chr13	107166693	107166694	rs2391333	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	13q33.3	EFNB2	rs2391333-?	NR	9E-8				Affymetrix [5908111] (imputed)	N
1402	chr13	107179351	107179352	rs1886178	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q33.3	NR	rs1886178-A	0.4862	4E-17				NR [9056863] (imputed)	N
1402	chr13	107182435	107182436	rs9301142	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q33.3		rs9301142-C	0.48	1E-14		7.71	z score increase	Affymetrix [9061022] (imputed)	N
1402	chr13	107182435	107182436	rs9301142	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q33.3	NR	rs9301142-C	0.4917	5E-9				NR [9056863] (imputed)	N
1402	chr13	107188133	107188134	rs74576663	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	13q33.3	NR	rs74576663-G	NR	5E-6		1.2271		Affymetrix [8183964] (imputed)	N
1403	chr13	107223315	107223316	rs61965347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q33.3		rs61965347-A	NR	3E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1403	chr13	107289295	107289296	rs9520130	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	13q33.3	ARGLU1	rs9520130-C	NR	9E-6		0.13993427	[0.078-0.202] unit decrease	Illumina [> 6200000] (imputed)	N
1403	chr13	107338800	107338801	rs1330950	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	13q33.3	LINCOO443	rs1330950-?		8E-7	(Hispanic)	17.5	[NR]	Illumina [936149]	N
1404	chr13	107377935	107377936	rs9301159	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 205)	19,670 European ancestry individuals	NA	13q33.3		rs9301159-?	NR	2E-9				NR [9705931] (imputed)	N
1404	chr13	107457288	107457289	rs75471160	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	13q33.3		rs75471160-?	NR	7E-6				Illumina [7401356] (imputed)	N
1405	chr13	107516246	107516247	rs9520222	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs9520222-?	NR	3E-9				Affymetrix [NR]	N
1405	chr13	107518895	107518896	rs74113717	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	13q33.3	NR	rs74113717-?	NR	3E-8	(Clostridium_xylanovorans)	0.623441	[0.41-0.84] unit increase	Illumina [5293637] (imputed)	N
1405	chr13	107561331	107561332	rs9558896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q33.3		rs9558896-C	NR	8E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1405	chr13	107566857	107566858	rs840225	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	13q33.3	LINC00443, FAM155A	rs840225-T	0.36	7E-6		0.22	unit decrease	Illumina [5600000] (imputed)	N
1405	chr13	107585641	107585642	rs4772828	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	13q33.3		rs4772828-?	NR	3E-9				NR [9705931] (imputed)	N
1405	chr13	107588706	107588707	rs7327539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	13q33.3	Intergenic	rs7327539-A	0.6882	5E-9	(MTAG)	0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr13	107613087	107613088	rs965628	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	13q33.3	FAM155A	rs965628-C	0.5863	9E-7		0.0051	[0.0031-0.0071] unit increase	Affymetrix [~ 7740000] (imputed)	N
1406	chr13	107621618	107621619	rs9520255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q33.3	NR	rs9520255-T	0.564356	2E-12		0.013072	[0.0094-0.0167] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1406	chr13	107631393	107631394	rs9520257	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 21 levels	4,201 Taiwanese ancestry individuals	NA	13q33.3		rs9520257-C	0.85	6E-7		0.062	[0.038-0.086] unit increase	Affymetrix [7897704] (imputed)	N
1406	chr13	107633311	107633312	rs7320168	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs7320168-C	0.44764	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
1406	chr13	107642200	107642201	rs9555309	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q33.3		rs9555309-T	0.37	5E-20		9.17	z score increase	Affymetrix [9061022] (imputed)	N
1406	chr13	107642200	107642201	rs9555309	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	13q33.3		rs9555309-T	0.37	5E-10		6.21	z score increase	Affymetrix [9061022] (imputed)	N
1406	chr13	107642489	107642490	rs9555311	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q33.3		rs9555311-A	0.37	5E-12		6.91	z score increase	Affymetrix [9061022] (imputed)	N
1406	chr13	107642489	107642490	rs9555311	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q33.3	NR	rs9555311-A	0.3783	2E-10				NR [9056863] (imputed)	N
1406	chr13	107646032	107646034	rs10612751	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	13q33.3	NR	rs10612751-?	NR	3E-6				Illumina [at least 7383741] (imputed)	N
1406	chr13	107655309	107655309	rs10646652	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	13q33.3	FAM155A	rs10646652-T	0.502987	2E-8		0.0115393	[0.0075-0.0156] unit decrease	NR [16516521] (imputed)	N
1406	chr13	107662784	107662787	rs755742923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q33.3		rs755742923-T	0.403652	1E-11		0.016112482	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1406	chr13	107666256	107666257	rs9583151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs9583151-T	0.497948	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
1406	chr13	107666256	107666257	rs9583151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q33.3	NR	rs9583151-T	0.504507	3E-15		0.015266	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1406	chr13	107670971	107670972	rs17428393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q33.3	Intergenic	rs17428393-T	0.4403	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr13	107677079	107677080	rs4291791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q33.3	Intergenic	rs4291791-A	0.3723	1E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr13	107682586	107682587	rs16969611	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	13q33.3	ARGLU1, FAM155A	rs16969611-?	NR	7E-6	(adjusted for dose, GFR & AST)	3.629	unit increase (EA, Australian cohort)	Illumina [610255]	N
1406	chr13	107683518	107683518	rs148731571	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	13q33.3	NR	rs148731571-GCTTAGATATTAC	0.0639	6E-6	(EA)	0.0712	[0.04-0.102] unit decrease	Illumina [~ 11800000] (imputed)	N
1406	chr13	107700217	107700218	rs9558942	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q33.3	ARGLU1, FAM155A	rs9558942-C	0.3278	4E-8		1.0193856		Affymetrix [11880941] (imputed)	N
1406	chr13	107700217	107700218	rs9558942	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	FAM155A	rs9558942-G	0.46	7E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
1406	chr13	107734877	107734878	rs72662902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q33.3		rs72662902-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1407	chr13	107780315	107780316	rs1927745	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	13q33.3	FAM155A	rs1927745-A	0.24	5E-6		0.16	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	9E-9	(-162 ms)	0.0322073	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	8E-9	(-166 ms)	0.0322502	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	8E-9	(-164 ms)	0.0321527	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	5E-9	(-156 ms)	0.033083	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	5E-8	(-168 ms)	0.0312043	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	4E-8	(-170 ms)	0.031026	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	3E-8	(-172 ms)	0.0311674	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	3E-8	(-154 ms)	0.031812	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	2E-8	(-160 ms)	0.031807	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107788537	107788538	rs2769884	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q33.3	FAM155A	rs2769884-G	0.611143	1E-8	(-158 ms)	0.0322592	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1407	chr13	107790400	107790401	rs35669975	25963547	Wilson CL	2015-05-11	Cancer	Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.	Obesity in adult survivors of childhood cancer exposed to cranial radiation	365 obese individuals, 411 non-obese individuals	NA	13q33.3	FAM155A	rs35669975-C	0.61	3E-8		1.92	[1.52-2.44]	Affymetrix [NR] (imputed)	N
1407	chr13	107817668	107817669	rs4772857	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	13q33.3	FAM155A	rs4772857-G		2E-6		1.604	[NR]	Affymetrix [NR]	N
1407	chr13	107819096	107819097	rs2806519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q33.3	Intergenic	rs2806519-T	0.6954	7E-9	(MTAG)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1407	chr13	107819096	107819097	rs2806519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	13q33.3	Intergenic	rs2806519-C	0.3046	2E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1407	chr13	107820388	107820389	rs2769916	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	13q33.3	FAM155A	rs2769916-A		1E-19		0.0084	[0.0066-0.0102] unit increase	Affymetrix [13304133] (imputed)	N
1407	chr13	107854611	107854612	rs9888533	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q33.3	FAM155A	rs9888533-C	0.461906	5E-8		0.00765412	[0.0049-0.0104] unit decrease	Affymetrix [12370749]	N
1407	chr13	107854611	107854612	rs9888533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q33.3	NR	rs9888533-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1407	chr13	107854611	107854612	rs9888533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q33.3		rs9888533-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1407	chr13	107865441	107865442	rs9520326	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	13q33.3	FAM155A	rs9520326-T	NR	6E-6		0.4326	unit decrease	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1408	chr13	107902241	107902242	rs9514637	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	13q33.3	FAM155A	rs9514637-G	0.724	5E-8		1.2195122	[1.14-1.32]	Illumina [32463443] (imputed)	N
1408	chr13	107902769	107902770	rs9520344	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	13q33.3	FAM155A	rs9520344-A	0.241527556382246	5E-12		0.0043373	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1408	chr13	107942431	107942432	rs9558996	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	13q33.3	FAM155A	rs9558996-?	NR	5E-6		1.285	unit increase (EA)	Illumina [610255]	N
1408	chr13	107995342	107995343	rs61967180	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	13q33.3	FAM155A	rs61967180-A	0.9352	2E-7		0.0753	[0.047-0.104] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1409	chr13	108020514	108020515	rs9301215	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q33.3	NR	rs9301215-T	0.13	3E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1409	chr13	108030520	108030521	rs36067904	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q33.3	FAM155A	rs36067904-?	NR	1E-6		2.7	[1.75-4.15]	Illumina [NR] (imputed)	N
1409	chr13	108123108	108123109	rs75244278	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	13q33.3		rs75244278-G	0.9849	3E-6		0.162	[0.093-0.231] unit decrease	Illumina [7778465] (imputed)	N
1410	chr13	108134908	108134909	rs9520462	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	13q33.3	FAM155A	rs9520462-?	NR	7E-6				Illumina [~ 2400000] (imputed)	N
1410	chr13	108152560	108152561	rs1018597	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs1018597-?	NR	2E-10				Affymetrix [NR]	N
1410	chr13	108215403	108215404	rs9555371	30661054	Schafmayer C	2019-01-19	Gut	Genome-wide association analysis of diverticular disease points towards neuromuscular, connective tissue and epithelial pathomechanisms.	Diverticular disease	31,964 European ancestry cases, 419,135 European ancestry controls	4,611 European ancestry cases, 31,478 European ancestry controls	13q33.3	FAM155A	rs9555371-A	0.802	1E-13		1.0752687	[1.05-1.1]	Affymetrix [11977111] (imputed)	N
1410	chr13	108218957	108218958	rs11619840	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	13q33.3	FAM155A	rs11619840-A	0.18534150187987	2E-9		0.0041742	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1410	chr13	108224983	108224984	rs67153654	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	13q33.3	FAM155A	rs67153654-T	0.814	2E-7		1.25	[1.15-1.35]	Illumina [32463443] (imputed)	N
1410	chr13	108224983	108224984	rs67153654	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticular disease	5,426 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	5,970 Danish ancestry cases, 3,020 Danish ancestry controls	13q33.3	FAM155A	rs67153654-T	0.814	1E-8		1.1494253	[1.1-1.2]	Illumina [32463443] (imputed)	N
1410	chr13	108228012	108228013	rs144312179	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	13q33.3	FAM155A	rs144312179-?	NR	3E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
1410	chr13	108228012	108228013	rs144312179	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	13q33.3	FAM155A	rs144312179-?	NR	6E-7	(Additive)	4.830918	[NR]	Illumina [15200000] (imputed)	N
1410	chr13	108257219	108257220	rs957788	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	13q33.3	FAM155A	rs957788-?	0.31	8E-6				Illumina [~ 598000]	N
1411	chr13	108313450	108313451	rs140781040	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	13q33.3	FAM155A	rs140781040-T	0.008	7E-7		5.69	[2.86-11.33]	Illumina [7959153] (imputed)	N
1412	chr13	108402550	108402551	rs9520569	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	13q33.3	FAM155A	rs9520569-T	0.7353	8E-6		1.4449	[1.28-1.61]	Illumina [10736316] (imputed)	N
1412	chr13	108405821	108405822	rs57651997	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	13q33.3	NR	rs57651997-T	NR	7E-6	(male)	0.3492	[0.2-0.5] unit decrease	Illumina [11133794] (imputed)	N
1412	chr13	108479965	108479966	rs10508196	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	13q33.3	FAM155A	rs10508196-A	0.11	2E-6	(Age 6)	1.08	[1.05-1.12] unit increase	Illumina [2461244] (imputed)	N
1412	chr13	108484453	108484454	rs2036707	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	FAM155A	rs2036707-A	0.142	7E-6	(Fat mass )	0.02	[NR] % increase	Illumina [899892]	N
1412	chr13	108491591	108491592	rs1509091	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	13q33.3	FAM155A	rs1509091-C		3E-6		0.11	[0.06-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1412	chr13	108507570	108507571	rs145173555	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.3	NR	rs145173555-C	0.0122	6E-14	(IGHA1)	1.155	NR unit increase	Illumina [1671387] (imputed)	N
1412	chr13	108522520	108522521	rs816960	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	13q33.3	NR	rs816960-C	NR	5E-7		0.1224	[0.075-0.17] SD units increase	NR [10700000] (imputed)	N
1413	chr13	108563527	108563528	rs2391585	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	13q33.3	FAM155A	rs2391585-A	NR	5E-6		1.057	[1.032- 1.082]	Illumina [6740241] (imputed)	N
1413	chr13	108583892	108583893	rs75141555	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q33.3	Intergenic	rs75141555-A	0.2089	2E-10	(MTAG)	0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1413	chr13	108583892	108583893	rs75141555	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	13q33.3	Intergenic	rs75141555-A	0.2163	4E-8	(MTAG)	0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1414	chr13	108664753	108664754	rs9559203	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	13q33.3	Intergenic	rs9559203-C	NR	8E-6	(Irritable dimension)	0.3784	[0.21-0.54] unit decrease	Illumina [1871025] (imputed)	N
1414	chr13	108668546	108668547	rs12871532	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	13q33.3	FAM155A	rs12871532-T		1E-6	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
1414	chr13	108672384	108672385	rs9520713	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	13q33.3	FAM155A	rs9520713-?	NR	4E-6			NR	Affymetrix [2067592] (imputed)	N
1414	chr13	108681129	108681130	rs7985095	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	13q33.3	Intergenic	rs7985095-?	NR	8E-6		1.3544629	[NR]	Affymetrix [492217] (imputed)	N
1414	chr13	108694175	108694176	rs17674880	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs17674880-?	NR	3E-7				Affymetrix [NR]	N
1414	chr13	108774788	108774789	rs147085754	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	13q33.3	LIG4, FAM155A	rs147085754-A	0.025	5E-6		0.198	[0.11-0.28] unit increase	Affymetrix [7287191] (imputed)	N
1415	chr13	108816224	108816225	rs10492664	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	13q33.3	LIG4, ABHD13	rs10492664-C	0.84	1E-6				Perlegen [378332]	N
1415	chr13	108831615	108831616	rs9514822	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	13q33.3	NA	rs9514822-T		4E-11		0.0178964	[0.013-0.023] unit increase	Illumina [13288253] (imputed)	N
1415	chr13	108915393	108915394	rs111727450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q33.3	TNFSF13B	rs111727450-T	0.025877	3E-14		0.052997224	[0.039-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1415	chr13	108916650	108916651	rs73609093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs73609093-T	NR	3E-12		0.0526	[0.038-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr13	108934295	108934296	rs74399908	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TNFSF13B	rs74399908-?	NR	1E-8	(female)	2.79838	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1416	chr13	108935688	108935689	rs16972222	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	13q33.3	TNFSF13B	rs16972222-?	NR	1E-9		0.02789	[0.019-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q33.3		rs200748895-T	NR	2E-9		0.053	[0.036-0.07] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q33.3		rs200748895-T	NR	1E-9		0.0528	[0.036-0.07] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	13q33.3	NR	rs200748895-T	NR	2E-9		0.0567	[0.038-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-10		0.1749	[0.12-0.23] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-14		0.209	[0.16-0.26] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T/B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.29241	2E-21		0.2637	[0.21-0.32] unit decrease	Illumina [18427377] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Switched memory B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	2E-8		0.1539	[0.1-0.21] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Switched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-12		0.1968	[0.14-0.25] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.29209	2E-11		0.1803	[0.13-0.23] unit decrease	Illumina [18430820] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-14		0.212	[0.16-0.27] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	3E-23		0.2693	[0.22-0.32] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38dim B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	2E-9		0.1611	[0.11-0.21] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	4E-10		0.1719	[0.12-0.23] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38dim B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	9E-9		0.1556	[0.1-0.21] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-11		0.1877	[0.13-0.24] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	3E-17		0.2322	[0.18-0.29] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	5E-24		0.2756	[0.22-0.33] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell Absolute Count	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30013	2E-10		0.1743	[0.12-0.23] unit increase	Illumina [18238316] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell %Lymphocyte	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30013	4E-19		0.24	[0.19-0.29] unit increase	Illumina [18238316] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	1E-13		0.2036	[0.15-0.26] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.30007	8E-21		0.2531	[0.2-0.31] unit increase	Illumina [18238287] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.29241	4E-12		0.1884	[0.14-0.24] unit increase	Illumina [18427377] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.29209	6E-23		0.2709	[0.22-0.32] unit increase	Illumina [18430820] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs200748895-T	0.29209	2E-11		0.1782	[0.13-0.23] unit increase	Illumina [18430820] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.020423	9E-17		0.07095439	[0.054-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.0204299999999999	4E-9		0.05026579	[0.034-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q33.3	TNFSF13B	rs200748895-?	0.03	1E-17		1.26	[1.23-1.29]	Illumina [at least 560000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.0213	9E-11		0.08764268	[0.061-0.114] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.0214	2E-12		0.0970577	[0.07-0.124] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.0214	1E-9		0.08309036	[0.056-0.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	13q33.3	TNFSF13B	rs200748895-T	0.0214	1E-10		0.08709248	[0.06-0.114] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108960380	108960384	rs200748895	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q33.3	TNFSF13B	rs200748895-?	NR	1E-17		1.2594458	[1.19-1.33]	Illumina [13757430] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q33.3		rs374039502-A	NR	9E-12		0.0604	[0.043-0.078] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q33.3		rs374039502-A	NR	3E-30		0.1069	[0.088-0.125] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q33.3		rs374039502-A	NR	2E-8		0.0499	[0.033-0.067] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q33.3		rs374039502-A	NR	3E-35		0.1067	[0.09-0.124] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q33.3	TNFSF13B	rs374039502-A	0.020936	3E-14		0.063445285	[0.047-0.08] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q33.3	TNFSF13B	rs374039502-A	0.020906	4E-24		0.08303279	[0.067-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q33.3	TNFSF13B	rs374039502-A	0.020899	5E-37		0.10606379	[0.09-0.122] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.0216163	6E-20				Affymetrix, Illumina [24649327] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.022018	2E-20		0.065211	[0.051-0.079] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.0216698	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.022093	8E-16		0.056561	[0.043-0.07] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.0214297	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.021428	5E-58				Affymetrix, Illumina [23467995] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q33.3	NR	rs374039502-A	0.02184	4E-61		0.116206	[0.1-0.13] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q33.3	TNFSF13B	rs374039502-T	0.97895	2E-11		0.047464	[0.034-0.061] unit increase	Affymetrix [NR] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q33.3	TNFSF13B	rs374039502-T	0.978937	1E-9		0.0439974	[0.03-0.058] unit increase	Affymetrix [NR] (imputed)	N
1416	chr13	108960384	108960385	rs374039502	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q33.3	TNFSF13B	rs374039502-A	0.021	2E-10		0.08551606	[0.059-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108966168	108966169	rs1232641	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q33.3	TNFSF13B	rs1232641-C	0.70640625	3E-7	(TNFSF13B, 3059_50_2)	0.13951504	[0.087-0.192] unit increase	Illumina [> 1000000] (imputed)	N
1416	chr13	108991672	108991673	rs1326406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q33.3		rs1326406-A	0.35671	2E-11		0.01580456	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1416	chr13	108993493	108993494	rs12874404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs12874404-G	NR	6E-22		0.0539	[0.043-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1416	chr13	108993493	108993494	rs12874404	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs12874404-G	NR	4E-35		0.0693	[0.058-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1416	chr13	108993493	108993494	rs12874404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q33.3		rs12874404-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1416	chr13	108993493	108993494	rs12874404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q33.3	intergenic	rs12874404-G	0.0544	3E-13		0.05778536	[0.042-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108993493	108993494	rs12874404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q33.3	intergenic	rs12874404-G	0.0543	4E-9		0.04654519	[0.031-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	108994358	108994359	rs9514836	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q33.3		rs9514836-A	0.757	2E-8				Affymetrix [10369434] (imputed)	N
1416	chr13	108998504	108998505	rs9559300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs9559300-G	NR	7E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1416	chr13	109003513	109003514	rs114167228	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	13q33.3	TNFSF13B	rs114167228-A	0.0214	5E-6		2.818	[1.809-4.391]	Affymetrix, Illumina [14074516] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q33.3		rs150861794-C	0.982	2E-20				Affymetrix [10369434] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q33.3		rs150861794-C	0.982	1E-12				Affymetrix [10369434] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q33.3	NR	rs150861794-T	0.018029	3E-15		0.06999968	[0.053-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q33.3		rs150861794-T	0.018033	2E-10		0.056254104	[0.039-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q33.3	NR	rs150861794-C	0.980223	2E-12		0.052592	[0.038-0.067] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1416	chr13	109003804	109003805	rs150861794	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q33.3	intergenic	rs150861794-T	0.0202	3E-25		0.1435155	[0.12-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1416	chr13	109033270	109033271	rs146346907	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	13q33.3	Intergenic	rs146346907-G	1.0	3E-6	(AA)	0.75	unit increase	Illumina [NR] (imputed)	N
1417	chr13	109066030	109066031	rs78748598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	13q33.3	NR	rs78748598-?	NR	3E-11		0.1079	[0.076-0.14] unit decrease	Illumina [at least 560000] (imputed)	N
1417	chr13	109076460	109076461	rs17468013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs17468013-T	NR	2E-10		0.0301	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1417	chr13	109076460	109076461	rs17468013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q33.3	NR	rs17468013-T	NR	1E-11		0.0322	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1417	chr13	109171414	109171415	rs11616603	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	13q33.3	intergenic	rs11616603-A	0.848	9E-6		0.8767	[0.49-1.26] unit decrease	Illumina [at least 4683137] (imputed)	N
1418	chr13	109235411	109235412	rs150949191	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	13q33.3	intergenic	rs150949191-A	0.015	5E-10	(YKL-40)	37.114	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1418	chr13	109264869	109264870	rs9559377	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	13q33.3	MYO16	rs9559377-A	NR	5E-6		0.49	[0.27-0.71] unit increase	Affymetrix, Illumina [2354422] (imputed)	N
1418	chr13	109267465	109267466	rs75764673	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	13q33.3	MYO16	rs75764673-A	0.73	2E-12		0.0068	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1418	chr13	109267984	109267985	rs10162202	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	13q33.3	MYO16	rs10162202-T	0.72	9E-13		0.00711	[0.0052-0.0091] unit increase	Affymetrix [at least 8002429] (imputed)	N
1418	chr13	109282301	109282302	rs9284241	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs9284241-?	NR	5E-20				Affymetrix [NR]	N
1418	chr13	109283029	109283030	rs9583269	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	13q33.3	MYO16	rs9583269-?		6E-7		1.4427933	[NR]	Affymetrix [492217] (imputed)	N
1418	chr13	109286727	109286728	rs11069745	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q33.3		rs11069745-C	0.36	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
1419	chr13	109341440	109341441	rs9559382	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	13q33.3	NR	rs9559382-?	NR	9E-6		0.019	[0.011-0.027] unit decrease	Illumina [at least 560000] (imputed)	N
1419	chr13	109347658	109347659	rs7984522	22763476	Zhang D	2012-07-05	Hypertens Res	Genome-wide linkage and association scans for pulse pressure in Chinese twins.	Blood pressure	63 Chinese ancestry dizygotic twin pairs	NA	13q33.3	MYO16	rs7984522-?	NR	7E-7				Affymetrix [~ 900000]	N
1419	chr13	109355935	109355936	rs1926511	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	13q33.3	MYO16	rs1926511-?	NR	1E-7	(EA)	0.0107	[0.011-0.011] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1419	chr13	109358404	109358405	rs1926528	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	13q33.3	MYO16	rs1926528-T	0.785	2E-6	(Stability score)	0.7414	[0.44-1.05] unit decrease	Affymetrix [8042262] (imputed)	N
1419	chr13	109380725	109380726	rs10492418	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	13q33.3	MYO16	rs10492418-?	0.4292	2E-6	(anti-B2 GPI)	2.172	[NR]	Affymetrix [906600]	N
1419	chr13	109383268	109383269	rs151235076	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	13q33.3	NR	rs151235076-T	0.0097	4E-6		188.0	[108-267] unit increase	NR [9714326] (imputed)	N
1419	chr13	109411141	109411142	rs78916474	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	13q33.3	NR	rs78916474-A	0.017	3E-8		0.04	[0.026-0.054] unit decrease	NR [NR] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q33.3	MYO16	rs9521010-A	0.526953	3E-9		0.013148935	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q33.3	MYO16	rs9521010-A	0.527029	3E-24		0.0213357	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q33.3	MYO16	rs9521010-A	0.526984	3E-20		0.02042173	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs9521010-A	0.528049	3E-30				Affymetrix, Illumina [24246363] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q33.3	NR	rs9521010-A	0.526031	2E-25		0.018979	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs9521010-A	0.529322	4E-25				Affymetrix, Illumina [20825802] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q33.3	NR	rs9521010-A	0.526828	3E-21		0.018298	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1419	chr13	109412638	109412639	rs9521010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q33.3		rs9521010-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1419	chr13	109412703	109412704	rs9521011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	13q33.3	MYO16	rs9521011-G	0.5272	3E-11		0.02376264	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1419	chr13	109412733	109412733	rs67282839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q33.3	NR	rs67282839-I	0.586979	3E-10		0.013157	[0.0091-0.0172] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1419	chr13	109419158	109419159	rs9521017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q33.3	MYO16	rs9521017-T	0.3647	1E-11		0.02492886	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1419	chr13	109419158	109419159	rs9521017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q33.3	MYO16	rs9521017-T	0.3647	3E-12		0.02575249	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	13q33.3		rs9521025-C	NR	2E-7		0.19930555	[0.12-0.27] increase	Illumina [6334277] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q33.3		rs9521025-C	NR	4E-19		0.0158	[0.012-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q33.3	MYO16	rs9521025-C	0.359775	5E-16		0.018692065	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q33.3	MYO16	rs9521025-C	0.359721	1E-16		0.019297315	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q33.3	MYO16	rs9521025-C	0.359805	2E-18		0.020556737	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1419	chr13	109422125	109422126	rs9521025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q33.3		rs9521025-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1419	chr13	109423088	109423089	rs9521026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q33.3		rs9521026-A	NR	3E-23		0.0203	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1419	chr13	109423088	109423089	rs9521026	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs9521026-A	0.403296	2E-18				Affymetrix, Illumina [24332387] (imputed)	N
1419	chr13	109423088	109423089	rs9521026	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q33.3	NR	rs9521026-A	0.359207	1E-17		0.01709	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1419	chr13	109425905	109425906	rs2893329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	13q33.3		rs2893329-C	0.576226	2E-8		0.0206172	[0.013-0.028] unit decrease	Illumina [13476299] (imputed)	N
1419	chr13	109428830	109428831	rs71435301	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MYO16	rs71435301-?	NR	3E-10	(female)	1.75846	[NR] unit increase	Affymetrix [NR] (imputed)	N
1419	chr13	109431194	109431195	rs12870446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	13q33.3		rs12870446-G	0.414642	2E-10		0.0232903	[0.016-0.03] unit increase	Illumina [13476266] (imputed)	N
1420	chr13	109455834	109455835	rs984300	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q33.3	MYO16	rs984300-G	0.373	3E-6	(Urinary free dopamine )	0.02	[NR] nmol/d increase	Illumina [899892]	N
1420	chr13	109457504	109457505	rs9587691	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	13q33.3		rs9587691-C	0.972761	5E-6		0.0267179	[0.015-0.038] unit decrease	Illumina [13900000] (imputed)	N
1420	chr13	109473945	109473946	rs17393344	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		13q33.3	MYO16	rs17393344-?	0.06	2E-8		0.26	unit decrease	Illumina [NR] (imputed)	N
1420	chr13	109502848	109502849	rs17485138	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	13q33.3	MYO16	rs17485138-?	NR	7E-6	(DMFS2)			Illumina [518997]	N
1420	chr13	109511058	109511059	rs814141	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	13q33.3	NR	rs814141-?		5E-6	(AA)			Illumina [up to 524000]	N
1420	chr13	109512737	109512738	rs196154	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs196154-?	NR	7E-6				Affymetrix [NR]	N
1420	chr13	109547383	109547384	rs73614646	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	13q33.3		rs73614646-G	NR	2E-6		0.26718614	[0.16-0.38] increase	Illumina [6334277] (imputed)	N
1420	chr13	109550560	109550561	rs7322768	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	13q33.3	NR	rs7322768-A	0.2464	2E-6		0.1682	[0.099-0.237] unit increase	Illumina [10677593] (imputed)	N
1420	chr13	109556518	109556519	rs78553789	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	13q33.3	NR	rs78553789-?	NR	6E-7	(EA)	0.6956	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1421	chr13	109577281	109577282	rs9587723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q33.3	TNFSF13B	rs9587723-?	NR	6E-6	(betaine)	3.2835424	[1.86-4.7] unit increase	Affymetrix [at least 2500000] (imputed)	N
1421	chr13	109579843	109579844	rs2391677	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q33.3	NR	rs2391677-?	NR	3E-10		0.2	[0.14-0.26] unit increase	Illumina [at least 830937] (imputed)	N
1421	chr13	109609950	109609951	rs9559450	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	13q33.3	NR	rs9559450-?	NR	6E-6		3.88	[2.94-5.11]	Illumina [539000] (imputed)	N
1421	chr13	109624454	109624455	rs4771622	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	13q33.3	MYO16	rs4771622-C	0.812	3E-6		0.13	[0.18-0.08] unit decrease	Affymetrix [7435577] (imputed)	N
1421	chr13	109642864	109642864	rs5806773	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	13q33.3		rs5806773-GA	0.25074	1E-6		0.037728	[0.023-0.053] unit increase	Affymetrix [15580782] (imputed)	N
1421	chr13	109642864	109642864	rs5806773	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	13q33.3		rs5806773-GA	0.25074	1E-6		0.03798	[0.023-0.053] unit increase	Affymetrix [15580782] (imputed)	N
1421	chr13	109681835	109681836	rs9521133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	13q33.3	Intergenic	rs9521133-A	0.9544	4E-8	(MTAG)	0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1421	chr13	109690302	109690303	rs7334647	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	13q33.3	NR	rs7334647-G	0.3371	7E-14				NR [9056863] (imputed)	N
1421	chr13	109706966	109706967	rs78667595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	13q33.3	Intergenic	rs78667595-A	0.093	4E-8	(MTAG)	0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1422	chr13	109707826	109707827	rs9521141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q33.3		rs9521141-C	0.14	5E-16		8.11	z score increase	Affymetrix [9061022] (imputed)	N
1422	chr13	109707826	109707827	rs9521141	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	13q33.3		rs9521141-C	0.14	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1422	chr13	109707826	109707827	rs9521141	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	13q33.3	NR	rs9521141-C	0.1354	8E-9				NR [9056863] (imputed)	N
1422	chr13	109707826	109707827	rs9521141	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	13q33.3		rs9521141-?	NR	4E-8				NR [9705931] (imputed)	N
1422	chr13	109729169	109729170	rs9521159	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	13q33.3	NR	rs9521159-G	0.604	8E-7		1.0793891	[NR]	NR [9372253] (imputed)	N
1422	chr13	109779905	109779906	rs3815983	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q33.3	MYO16	rs3815983-C	0.6396	4E-10		1.021835		Affymetrix [11880941] (imputed)	N
1422	chr13	109782567	109782568	rs9521184	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	13q33.3		rs9521184-T	0.4871	8E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1422	chr13	109793176	109793177	rs150813880	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q33.3	Intergenic	rs150813880-A	NR	1E-6	(between families)	4.895	unit increase	Affymetrix [up to 15107142] (imputed)	N
1422	chr13	109799450	109799451	rs275945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q33.3	NR	rs275945-G	0.348909	5E-11		0.01369	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1422	chr13	109799450	109799451	rs275945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q33.3		rs275945-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1422	chr13	109800040	109800041	rs275943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q33.3	MYO16	rs275943-T	0.348877	5E-15		0.018148635	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr13	109808285	109808286	rs912322	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	13q33.3	MYO16	rs912322-A	0.73251	1E-6		1.259729	[1.15-1.37]	Affymetrix, Illumina [2928658] (imputed)	N
1422	chr13	109809621	109809622	rs11618532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q33.3	MYO16	rs11618532-C	0.652926	6E-10		0.014435198	[0.0099-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1422	chr13	109809621	109809622	rs11618532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs11618532-C	0.638302	4E-10				Affymetrix, Illumina [19872809] (imputed)	N
1422	chr13	109812085	109812085	rs75900305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q33.3	MYO16	rs75900305-GC	0.30535	3E-10		0.015628936	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1422	chr13	109812085	109812085	rs75900305	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q33.3	MYO16	rs75900305-GC	0.3059	9E-11		0.02570513	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1422	chr13	109815111	109815112	rs55864736	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	13q33.3		rs55864736-A	NR	2E-7		1.45		Illumina [7574753] (imputed)	N
1422	chr13	109826295	109826295	rs35729053	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	13q33.3	NR	rs35729053-TGCG	0.170374	8E-6		0.80638254	[0.47-1.14] unit decrease	Illumina [at least 621854] (imputed)	N
1423	chr13	109901996	109901997	rs8002089	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	13q33.3	intergenic	rs8002089-A	0.32	9E-6		0.146	[0.081-0.211] unit increase	Illumina [6380737] (imputed)	N
1423	chr13	109908403	109908404	rs8000682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	13q33.3		rs8000682-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1423	chr13	109918214	109918215	rs111345531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q33.3		rs111345531-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1423	chr13	109918492	109918493	rs9634470	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	13q33.3	MYO16	rs9634470-T	0.7347	3E-14		0.0208	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1423	chr13	109922853	109922854	rs188250047	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	13q33.3		rs188250047-?	NR	1E-10		0.6294	[0.44-0.82] unit increase	Affymetrix [NR] (imputed)	N
1423	chr13	109940862	109940863	rs4287436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	13q33.3		rs4287436-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1423	chr13	109940938	109940939	rs9515039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	13q33.3		rs9515039-C	NR	3E-8		0.0427	[0.028-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1423	chr13	109944191	109944192	rs9555581	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	13q33.3	NR	rs9555581-C	0.6102	4E-10		0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1423	chr13	109946881	109946882	rs9587811	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q33.3	NR	rs9587811-C	0.5464	5E-11		0.0248	[0.017-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1423	chr13	109947212	109947213	rs7987740	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q33.3	IRS2	rs7987740-T	0.6094	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1423	chr13	109960306	109960307	rs72660136	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	13q33.3	NR	rs72660136-T	0.965765	9E-10		0.0212318	[0.014-0.028] unit increase	Affymetrix [16578495] (imputed)	N
1423	chr13	109960306	109960307	rs72660136	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	13q33.3	NR	rs72660136-T	0.965948	5E-16		0.0604855	[0.045-0.076] unit increase	Affymetrix [16580851] (imputed)	N
1423	chr13	109962578	109962579	rs7335249	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	13q33.3	NA	rs7335249-T	0.5617	2E-7		0.009	[0.0057-0.0123] unit increase	NR [~ 27400000] (imputed)	N
1424	chr13	109976272	109976273	rs7139370	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	13q33.3		rs7139370-T	0.06753	5E-8		0.2947	[0.19-0.4] unit increase	Illumina [18132558] (imputed)	N
1424	chr13	110011838	110011839	rs9555596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	13q33.3	intergenic	rs9555596-C	0.384	7E-13		0.02645999	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1424	chr13	110011838	110011839	rs9555596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	13q33.3	intergenic	rs9555596-C	0.384	3E-11		0.02454555	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1424	chr13	110019359	110019360	rs56394481	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	13q33.3		rs56394481-?	NR	9E-6				Illumina [1365315]	N
1424	chr13	110023730	110023731	rs9521336	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	13q33.3	MYO16-AS1, LINC00399	rs9521336-C	0.2146	2E-6		0.0378	NR unit increase	NR [NR] (imputed)	N
1424	chr13	110026927	110026928	rs1887639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q33.3	intergenic	rs1887639-C	0.5256	4E-11		0.02382637	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1424	chr13	110036688	110036689	rs9521344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q33.3		rs9521344-T	NR	9E-28		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1424	chr13	110036688	110036689	rs9521344	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	13q33.3		rs9521344-C	0.646	3E-10				Affymetrix [10369434] (imputed)	N
1424	chr13	110039213	110039214	rs36055714	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	13q33.3		rs36055714-T	0.646	2E-9				Affymetrix [10369434] (imputed)	N
1424	chr13	110039213	110039214	rs36055714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q33.3	NR	rs36055714-C	0.354396	1E-41		0.026467	[0.023-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1424	chr13	110039904	110039905	rs9521345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q33.3		rs9521345-A	0.354377	4E-25		0.024151707	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1424	chr13	110039904	110039905	rs9521345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q33.3		rs9521345-A	0.354412	6E-26		0.024367198	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1424	chr13	110039904	110039905	rs9521345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q33.3	NR	rs9521345-A	0.367685	4E-45				Affymetrix, Illumina [23467995] (imputed)	N
1424	chr13	110050242	110050246	rs534669156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	13q33.3		rs534669156-A	0.468838	2E-8		0.024612	[0.016-0.033] unit increase	Illumina [13471440] (imputed)	N
1424	chr13	110061820	110061821	rs7325477	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	13q33.3	NR	rs7325477-C	NR	7E-6				NR [NR] (imputed)	N
1424	chr13	110061820	110061821	rs7325477	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	13q33.3	NR	rs7325477-C	NR	8E-6				NR [NR] (imputed)	N
1424	chr13	110061820	110061821	rs7325477	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	13q33.3	LINC00399, LINC00676	rs7325477-A	0.6739	9E-6		0.1518	[0.085-0.219] unit increase	NR [NR] (imputed)	N
1424	chr13	110069736	110069737	rs9521357	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	13q33.3	NR	rs9521357-?	NR	1E-8				Illumina [7760689] (imputed)	N
1424	chr13	110076770	110076771	rs1077572	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	13q33.3	NR	rs1077572-C	0.148	3E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1425	chr13	110127964	110127965	rs17488950	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	13q33.3	LINC00676	rs17488950-T	0.07	1E-6		0.27	[0.15-0.39] unit decrease	Illumina [14638245] (imputed)	N
1425	chr13	110140821	110140822	rs61115127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q33.3	NR	rs61115127-C	0.0122	2E-8	(C4B)	0.4342	NR unit increase	Illumina [1671387] (imputed)	N
1425	chr13	110154027	110154028	rs4773054	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	13q33.3	intergenic	rs4773054-?	NR	7E-8	(Autism paternal model)	2.9	[1.91-4.39]	Illumina [up to 2017939]	N
1425	chr13	110154027	110154028	rs4773054	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	13q33.3	intergenic	rs4773054-?	NR	5E-8	(ASD paternal model)	2.66	[1.83-3.86]	Illumina [up to 2017939]	N
1425	chr13	110212282	110212283	rs9972050	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q33.3	NR	rs9972050-?	NR	4E-14				Affymetrix [NR]	N
1425	chr13	110229807	110229808	rs952614	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	13q33.3	LINC00676	rs952614-A	0.31	2E-6		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
1426	chr13	110243424	110243425	rs2391776	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	13q33.3	IRS2	rs2391776-C	0.14	1E-6		1.8518518	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1426	chr13	110243424	110243425	rs2391776	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	13q33.3	IRS2	rs2391776-C	0.143	4E-6		1.724138	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1426	chr13	110267248	110267249	rs2094900	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q34	NR	rs2094900-A	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1426	chr13	110303861	110303862	rs331631	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	13q34	LINC00676	rs331631-G	0.915	4E-6	(Mean vigilance)	0.2543	[0.15-0.36] unit increase	Affymetrix [8042262] (imputed)	N
1426	chr13	110305714	110305715	rs9555620	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	13q34	intergenic	rs9555620-?	NR	8E-6		0.31	[0.13-0.49] unit decrease	Illumina [at least 13000000] (imputed)	N
1426	chr13	110309379	110309380	rs11840576	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	13q34	MYO16, IRS2	rs11840576-?	NR	2E-6		8.684	unit increase (EA, Australian cohort)	Illumina [610255]	N
1426	chr13	110331639	110331640	rs9521470	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q34	COL4A1	rs9521470-?	NR	4E-6	(TAG 52:5)	0.64338595	[0.37-0.92] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1426	chr13	110350460	110350461	rs719739	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	13q34	NR	rs719739-C	0.57	3E-7		0.92	[0.89-0.95]	NR [NR] (imputed)	N
1426	chr13	110360783	110360784	rs75823044	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	13q34	NR	rs75823044-T	NR	2E-11		1.525	[1.35-1.73]	Affymetrix, Illumina [29235255] (imputed)	N
1426	chr13	110360783	110360784	rs75823044	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	13q34	NR	rs75823044-T	0.021	2E-11		1.53	[1.35-1.73]	Affymetrix, Illumina [18877980] (imputed)	N
1426	chr13	110360783	110360784	rs75823044	29117387	Conti DV	2017-08-01	J Natl Cancer Inst	Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry.	Prostate cancer	5,454 African American cases, 474 West African cases, 4,274 African American and African ancestry cases, 6,328 African American controls, 458 West African controls, 4,024 African American and African ancestry controls	NA	13q34	IRS2	rs75823044-T	0.02	6E-12		1.55	[1.37-1.76]	Affymetrix, Illumina [17013228] (imputed)	N
1427	chr13	110363534	110363535	rs12427884	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose size)	6,169 Latin American individuals	NA	13q34		rs12427884-?	NR	4E-10				Illumina [8703729] (imputed)	N
1427	chr13	110363534	110363535	rs12427884	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	13q34		rs12427884-?	NR	5E-6				Illumina [8703729] (imputed)	N
1427	chr13	110363534	110363535	rs12427884	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose protrusion)	6,169 Latin American individuals	NA	13q34		rs12427884-?	NR	2E-9				Illumina [8703729] (imputed)	N
1427	chr13	110367813	110367814	rs714828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q34		rs714828-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1427	chr13	110371263	110371264	rs1411552	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	13q34	IRS2	rs1411552-?	NR	7E-6		4.491	z-score increase	Illumina [1819374] (imputed)	N
1427	chr13	110372269	110372270	rs4773073	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	13q34	IRS2	rs4773073-?	NR	1E-11		0.0023	[0.0015-0.0031] unit decrease	Affymetrix [21347608] (imputed)	N
1427	chr13	110372269	110372270	rs4773073	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	13q34	IRS2	rs4773073-?	NR	2E-8		0.003	[0.0016-0.0044] unit decrease	Affymetrix [21347608] (imputed)	N
1427	chr13	110372691	110372691	rs146188897	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	13q34	MYO16, IRS2	rs146188897-?	NR	3E-10		0.03	[0.021-0.039] unit increase	Illumina [12039491] (imputed)	N
1427	chr13	110373034	110373035	rs1411551	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 20)	4,680 European ancestry individuals	3,566 European ancestry individuals	13q34		rs1411551-A	0.249677558	4E-12				Illumina [7417619] (imputed)	N
1427	chr13	110373668	110373668	rs553586720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q34	NR	rs553586720-TAA	NR	1E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1427	chr13	110373669	110373669	rs10652816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	13q34		rs10652816-TAA	NR	1E-9		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1427	chr13	110381690	110381691	rs9521492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	13q34		rs9521492-G	NR	5E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1427	chr13	110393184	110393185	rs9521499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	13q34	NR	rs9521499-C	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
1427	chr13	110402065	110402066	rs61358232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q34	IRS2	rs61358232-T	0.3241	5E-12		0.02616047	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr13	110402065	110402066	rs61358232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q34	IRS2	rs61358232-T	0.3241	4E-13		0.02754935	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr13	110407814	110407815	rs2289047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q34		rs2289047-A	NR	1E-24		0.0213	[0.017-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1427	chr13	110407814	110407815	rs2289047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q34	IRS2	rs2289047-A	0.323139	6E-13		0.017224343	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110407814	110407815	rs2289047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q34	IRS2	rs2289047-A	0.323109	4E-26		0.025417926	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110407814	110407815	rs2289047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q34	IRS2	rs2289047-A	0.323274	3E-30		0.0270699	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110407814	110407815	rs2289047	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs2289047-A	0.341539	9E-48				Affymetrix, Illumina [24246363] (imputed)	N
1427	chr13	110410888	110410889	rs112759492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs112759492-C	0.0496333	7E-10				Affymetrix, Illumina [24653286] (imputed)	N
1427	chr13	110410888	110410889	rs112759492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs112759492-C	0.0496713	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q34	IRS2	rs754205-C	0.383456	2E-16		0.01908515	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	IRS2	rs754205-C	0.383445	1E-14		0.017656272	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q34	IRS2	rs754205-C	0.38358	2E-33		0.027493773	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs754205-A	0.613169	3E-17				Affymetrix, Illumina [22063850] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q34	NR	rs754205-A	0.61663	5E-19		0.017341	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q34	NR	rs754205-C	0.383408	1E-44		0.026334	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs754205-C	0.405632	4E-46				Affymetrix, Illumina [20825802] (imputed)	N
1427	chr13	110411641	110411642	rs754205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q34	NR	rs754205-C	0.383379	8E-45		0.027992	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1427	chr13	110411641	110411642	rs754205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q34		rs754205-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1427	chr13	110411641	110411642	rs754205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q34		rs754205-?	NR	6E-32				NR [~ 8900000] (imputed)	N
1427	chr13	110411641	110411642	rs754205	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	13q34	IRS2	rs754205-C	0.3804	5E-10		0.02318425	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1427	chr13	110413034	110413035	rs75908536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q34		rs75908536-A	NR	1E-9		0.0281	[0.019-0.037] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1427	chr13	110413431	110413432	rs74789436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q34	IRS2	rs74789436-A	0.05388	5E-10		0.030690925	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110413513	110413514	rs58120907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q34	IRS2	rs58120907-A	0.325169	5E-13		0.017635822	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110414205	110414206	rs80326876	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	13q34	IRS2	rs80326876-T		1E-10		0.031	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1427	chr13	110419353	110419354	rs12584136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q34	NR	rs12584136-A	0.053056	4E-11		0.02737	[0.019-0.035] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1427	chr13	110424933	110424933	rs34939651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q34	IRS2	rs34939651-AG	0.055358	2E-18		0.04435485	[0.034-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110424933	110424933	rs34939651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q34	IRS2	rs34939651-AG	0.055329	5E-10		0.030622587	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110425218	110425219	rs12584954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q34	IRS2	rs12584954-A	0.053999	2E-9		0.029605199	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110426870	110426871	rs9521510	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	13q34	IRS2	rs9521510-T	0.67452	8E-28		0.0217744	[0.018-0.026] unit increase	NR [13737936] (imputed)	N
1427	chr13	110426870	110426871	rs9521510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	13q34		rs9521510-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1427	chr13	110431625	110431626	rs4771648	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	13q34	IRS2	rs4771648-G	0.6685	9E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1427	chr13	110448500	110448501	rs7987651	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	intergenic	rs7987651-T	0.1763	2E-8		0.1329	[0.086-0.179] mmHg decrease	Affymetrix [NR] (imputed)	N
1427	chr13	110451905	110451906	rs77719795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs77719795-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1427	chr13	110454701	110454702	rs1966662	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q34		rs1966662-?	NR	8E-27		0.0229865	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1427	chr13	110455927	110455934	rs67439138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q34		rs67439138-T	0.400838	1E-9		0.013954976	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110455940	110455940	rs397798894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	13q34		rs397798894-CT	0.388165	1E-8		0.0212126	[0.014-0.029] unit decrease	Illumina [13476266] (imputed)	N
1427	chr13	110456687	110456688	rs4771651	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	13q34	IRS2, LINC00396	rs4771651-?	NR	2E-8		0.0244	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr13	110456687	110456688	rs4771651	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	13q34	IRS2, LINC00396	rs4771651-?	NR	2E-8		0.02417	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr13	110463167	110463168	rs1078514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs1078514-T	0.341077	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
1427	chr13	110463167	110463168	rs1078514	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	13q34		rs1078514-?	NR	1E-26		0.0229635	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1427	chr13	110463167	110463168	rs1078514	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q34	IRS2	rs1078514-C	0.671616	1E-7	(women)	0.0234534	[0.014-0.033] unit increase	NR [17166351] (imputed)	N
1427	chr13	110463167	110463168	rs1078514	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	13q34	IRS2	rs1078514-C	0.671008	1E-11		0.0238453	[0.017-0.031] unit increase	NR [17166351] (imputed)	N
1427	chr13	110470767	110470768	rs72667768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	13q34		rs72667768-T	0.130017	1E-11		0.0347146	[0.025-0.045] unit decrease	Illumina [13478928] (imputed)	N
1427	chr13	110476670	110476671	rs336247	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	13q34	IRS2	rs336247-?	NR	4E-9				NR [3144808] (imputed)	N
1427	chr13	110478898	110478899	rs144344009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34		rs144344009-C	0.065058	6E-9		0.027040131	[0.018-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110481296	110481297	rs11616491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	13q34	NR	rs11616491-C	0.869598	3E-11		0.038267	[0.027-0.05] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1427	chr13	110489151	110489152	rs11618989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q34		rs11618989-T	NR	5E-63		0.0505	[0.045-0.056] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1427	chr13	110489151	110489152	rs11618989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34		rs11618989-T	0.101881	1E-11		0.025260016	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1427	chr13	110489151	110489152	rs11618989	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	13q34	IRS2, LINC00396	rs11618989-?	NR	1E-9		0.0378	[0.026-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q34		rs11841319-C	0.898	1E-13				Affymetrix [10369434] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q34		rs11841319-C	0.898	1E-35				Affymetrix [10369434] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q34		rs11841319-T	0.102187	1E-50		0.056590535	[0.049-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34		rs11841319-T	0.102193	3E-59		0.061341096	[0.054-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs11841319-T	0.106422	1E-89				Affymetrix, Illumina [24588908] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q34	NR	rs11841319-T	0.101445	7E-82		0.058421	[0.052-0.064] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	13q34	intergenic	rs11841319-T	0.1027	2E-22		0.0594791	[0.048-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1427	chr13	110492625	110492626	rs11841319	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q34	intergenic	rs11841319-T	0.1028	2E-27		0.06585331	[0.054-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1428	chr13	110497531	110497532	rs1577452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	13q34		rs1577452-G	NR	5E-17		0.0212	[0.016-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1428	chr13	110504963	110504964	rs12583851	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	13q34	NR	rs12583851-C	0.7503	6E-15		0.002021	[0.0015-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
1428	chr13	110511559	110511560	rs336248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q34		rs336248-C	0.837031	6E-10		0.019105129	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr13	110511559	110511560	rs336248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34		rs336248-C	0.837034	2E-11		0.020771902	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr13	110517669	110517670	rs9521533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q34		rs9521533-G	0.305768	3E-11		0.015969161	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1428	chr13	110522068	110522069	rs78366942	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs78366942-A	0.01045	2E-9	(CYP1A2)	0.8691	NR unit increase	Illumina [1671387] (imputed)	N
1428	chr13	110572209	110572210	rs7323507	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	13q34	NR	rs7323507-?		8E-6	(AA)			Illumina [up to 524000]	N
1429	chr13	110660189	110660190	rs111859823	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	13q34	NR	rs111859823-?	NR	4E-6		0.10961	[0.063-0.156] unit decrease	Affymetrix [9658292] (imputed)	N
1429	chr13	110727762	110727763	rs112114055	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q34	NR	rs112114055-?	NR	3E-6				Illumina [NR] (imputed)	N
1429	chr13	110754666	110754667	rs9521597	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q34	Metazoa_SRP, COL4A1, RN7SKP10, COL4A2	rs9521597-C	NR	8E-6	(sleep duration, weekdays)	0.2616	[0.15-0.38] unit increase	Affymetrix [7141204] (imputed)	N
1429	chr13	110755831	110755832	rs16854	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q34	COL4A1, RN7SKP10, COL4A2	rs16854-C	NR	1E-6	(sleep duration)	0.3088	[0.18-0.43] unit decrease	Affymetrix [7141204] (imputed)	N
1430	chr13	110766613	110766614	rs9521601	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	13q34	IRS2, COL4A1	rs9521601-G	0.47	8E-11		0.0056	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1430	chr13	110783931	110783932	rs118131161	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Diastolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	13q34	COL4A1	rs118131161-G	NR	1E-8	(EA)	7.3599	NR unit increase	Illumina [NR] (imputed)	N
1430	chr13	110790231	110790232	rs641862	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	COL4A1	rs641862-G	0.062	7E-7	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1430	chr13	110792742	110792743	rs12875271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q34		rs12875271-G	NR	8E-10		0.0227	[0.015-0.03] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1430	chr13	110792742	110792743	rs12875271	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	13q34	NR	rs12875271-?	NR	6E-12				NR [up to 7000000]	N
1430	chr13	110801871	110801872	rs143486029	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q34	COL4A1	rs143486029-?	NR	6E-6		0.253851	[0.14-0.36] unit decrease	Illumina [19707525] (imputed)	N
1430	chr13	110802122	110802123	rs13260	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	13q34	NR	rs13260-?	NR	9E-15				NR [up to 7000000]	N
1430	chr13	110802122	110802123	rs13260	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	COL4A1	rs13260-T	0.1314	2E-10		0.2548	[0.18-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
1430	chr13	110804808	110804809	rs650724	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	13q34	COL4A1	rs650724-?	NR	2E-7		1.1111112	[1.08-1.16]	Affymetrix, Illumina [39235000] (imputed)	N
1430	chr13	110806489	110806490	rs1192201	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	13q34	COL4A1	rs1192201-G	NR	2E-6	(Fixed effect)	0.08	[0.041-0.119] unit decrease	Illumina [4736131] (imputed)	N
1430	chr13	110818101	110818102	rs11617955	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	13q34	COL4A1	rs11617955-T	0.892605	4E-14		1.1	[1.07-1.13]	NR [8126035] (imputed)	N
1430	chr13	110818101	110818102	rs11617955	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	13q34	COL4A1	rs11617955-T	0.888935	2E-9		1.11	[1.07-1.15]	NR [10903881] (imputed)	N
1430	chr13	110818101	110818102	rs11617955	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q34	COL4A1	rs11617955-A	0.118	4E-17		0.081	[0.061-0.101] unit decrease	Affymetrix [7947838] (imputed)	N
1430	chr13	110818101	110818102	rs11617955	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	13q34	COL4A1, COL4A2	rs11617955-T	0.891	4E-10		1.09	[1.06-1.12]	Affymetrix [9149595] (imputed)	N
1430	chr13	110818101	110818102	rs11617955	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	13q34	COL4A1/A2	rs11617955-T	0.9	3E-6		1.09	[1.05-1.12]	Affymetrix, Illumina [8600000] (imputed)	N
1430	chr13	110818597	110818598	rs3742207	20031579	Tarasov KV	2009-04-01	Circ Cardiovasc Genet	COL4A1 is associated with arterial stiffness by genome-wide association scan.	Arterial stiffness	4,221 Sardinian individuals	1,828 Sardinian individuals, 813 Old Order Amish individuals	13q34	COL4A1	rs3742207-C	0.44	5E-8		21.0	[11.79-30.21] cm/s increase	Affymetrix [362129] (imputed)	N
1430	chr13	110820254	110820255	rs58814158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q34	COL4A1	rs58814158-G	0.156129	6E-14		0.023238085	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr13	110820254	110820255	rs58814158	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	13q34	COL4A1	rs58814158-G	0.1587	1E-9		0.03051207	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1430	chr13	110821523	110821524	rs75372280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q34	COL4A1	rs75372280-C	NR	4E-8		0.0203902	[0.013-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1430	chr13	110828890	110828891	rs1975514	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	13q34		rs1975514-C	0.36	2E-23		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1430	chr13	110828890	110828891	rs1975514	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	13q34	COL4A1	rs1975514-C	0.3534	8E-10		1.05	[1.04-1.07]	Affymetrix [at least 20323458] (imputed)	N
1430	chr13	110829881	110829882	rs71440053	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	13q34	COL4A1, COL4A2	rs71440053-T	NR	1E-6	(sleep onset, weekdays)	0.5621	[0.33-0.79] unit increase	Affymetrix [7141204] (imputed)	N
1430	chr13	110833898	110833899	rs9521634	30383316	Malik R	2018-11-01	Ann Neurol	Genome-Wide Meta-analysis identifies three novel loci associated with stroke.	Stroke	45,570 European ancestry cases, 26,577 cases, 775,530 European ancestry controls, 48,339 controls	NA	13q34	COL4A1	rs9521634-C	0.36	4E-8		1.04	[1.03-1.06]	NR [NR]	N
1430	chr13	110833898	110833899	rs9521634	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	13q34	COL4A1	rs9521634-C	0.34	1E-7		1.04	[1.03-1.06]	NR [~ 8000000] (imputed)	N
1430	chr13	110834965	110834966	rs12866570	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q34	COL4A1	rs12866570-T	0.1215	3E-15		0.0828	[0.062-0.103] unit decrease	NR [8041861] (imputed)	N
1430	chr13	110837552	110837553	rs638634	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	13q34	COL4A1	rs638634-T	0.302	1E-8				Affymetrix [28000000] (imputed)	N
1430	chr13	110842101	110842102	rs3783107	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	13q34	COL4A1	rs3783107-A	NR	8E-7				Illumina [up to 3791089] (imputed)	N
1430	chr13	110847745	110847746	rs12184772	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	13q34	NR	rs12184772-A		8E-8				Illumina [458865]	N
1430	chr13	110867234	110867235	rs1143914	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in diabetes	2,795 European ancestry cases, 4,831 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	13q34	NR	rs1143914-?		3E-6	(EA)	1.15	[1.09-1.22]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1430	chr13	110873555	110873556	rs675605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q34		rs675605-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1430	chr13	110878638	110878639	rs544012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34	COL4A1	rs544012-G	0.735164	1E-12		0.018537985	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1430	chr13	110878638	110878639	rs544012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	COL4A1	rs544012-G	0.735151	4E-12		0.01811899	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1430	chr13	110878638	110878639	rs544012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs544012-T	0.269328	1E-14				Affymetrix, Illumina [17210439] (imputed)	N
1430	chr13	110878638	110878639	rs544012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q34	NR	rs544012-T	0.265356	2E-15		0.017807	[0.013-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1431	chr13	110893840	110893841	rs56152426	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	13q34	COL4A1	rs56152426-A	0.82	5E-8				Affymetrix, Illumina [8002429] (imputed)	N
1431	chr13	110900792	110900793	rs7333277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34	COL4A1	rs7333277-A	0.529806	2E-9		0.013208905	[0.0089-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1431	chr13	110900792	110900793	rs7333277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs7333277-A	0.518805	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
1431	chr13	110900792	110900793	rs7333277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q34	NR	rs7333277-A	0.528593	2E-11		0.012952	[0.0092-0.0167] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1431	chr13	110900994	110900995	rs56294756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PARP11	5,353 Icelandic ancestry individuals	NA	13q34		rs56294756-T	0.02661	1E-16		0.111637	[0.085-0.138] unit increase	Illumina [7506463] (imputed)	N
1431	chr13	110907855	110907856	rs66656189	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	13q34	NR	rs66656189-?	NR	4E-6		0.05803292	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1431	chr13	110908930	110908931	rs112972174	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	13q34	COL4A1	rs112972174-G	0.981	2E-9		0.314	[0.21-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1431	chr13	110915134	110915135	rs627527	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q34	NR	rs627527-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1431	chr13	110915134	110915135	rs627527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q34		rs627527-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1431	chr13	110916117	110916118	rs9521678	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q34	COL4A1	rs9521678-T	0.7373	2E-10		0.0408	[0.028-0.053] unit increase	NR [8041861] (imputed)	N
1431	chr13	110918620	110918621	rs61963337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	COL4A1	rs61963337-A	0.19714	2E-16		0.023482943	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1431	chr13	110918659	110918660	rs11619113	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q34	COL4A1	rs11619113-?		4E-6				Illumina [4322238] (imputed)	N
1431	chr13	110925951	110925952	rs61963358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q34	COL4A1	rs61963358-T	NR	1E-9		0.0218939	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1431	chr13	110925951	110925952	rs61963358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q34	COL4A1	rs61963358-T	NR	1E-9		0.0219146	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1431	chr13	110928209	110928210	rs1193069	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q34	COL4A1	rs1193069-?	NR	4E-8		0.059841	[0.039-0.081] unit increase	Illumina [19707525] (imputed)	N
1431	chr13	110928438	110928439	rs2847468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q34	COL4A1	rs2847468-T	NR	1E-9		0.0202006	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1431	chr13	110929161	110929162	rs494558	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	COL4A1	rs494558-G	0.078	5E-8	(Weight z-score change )	0.05	[NR] SD/y increase	Illumina [899892]	N
1431	chr13	110930453	110930454	rs9588131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q34	COL4A1	rs9588131-A	0.343318	2E-9		0.0143404165	[0.0097-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1431	chr13	110930453	110930454	rs9588131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q34		rs9588131-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1431	chr13	110931437	110931438	rs73617438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	13q34	COL4A1	rs73617438-A	NR	2E-9		0.025666	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1431	chr13	110931437	110931438	rs73617438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	13q34	COL4A1	rs73617438-A	NR	2E-9		0.0253825	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1431	chr13	110932362	110932363	rs664532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	13q34	COL4A1	rs664532-T	NR	6E-11		0.0194572	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1431	chr13	110932362	110932363	rs664532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q34	NR	rs664532-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1431	chr13	110932362	110932363	rs664532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q34		rs664532-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1431	chr13	110932362	110932363	rs664532	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q34	NA	rs664532-T	0.3787	2E-9		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
1431	chr13	110936226	110936227	rs561437	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Behavioral disturbance or psychiatric symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	13q34	COL4A1	rs561437-?	0.499	5E-6		2.04	[1.49-2.86]	Illumina [518938]	N
1431	chr13	110937564	110937565	rs66500342	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	13q34	COL4A1	rs66500342-G	0.799347	4E-22		0.00608454	[0.0048-0.0073] unit increase	Affymetrix [13995440] (imputed)	N
1431	chr13	110938812	110938813	rs552125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q34	NR	rs552125-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1431	chr13	110938812	110938813	rs552125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	13q34	NR	rs552125-T	0.1181	2E-12		0.018	[0.013-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1431	chr13	110940361	110940361	rs151182529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	13q34		rs151182529-TGGGAGGCTGAG	NR	2E-15		0.0216	[0.016-0.027] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1431	chr13	110941502	110941503	rs59245704	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	13q34	COL4A1	rs59245704-T	0.837	5E-6		0.0561	[0.032-0.08] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1431	chr13	110954168	110954169	rs57225762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q34	NR	rs57225762-T	NR	4E-9		0.0157	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1431	chr13	110954168	110954169	rs57225762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	13q34	NR	rs57225762-T	NR	1E-9		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1431	chr13	110954236	110954237	rs4773140	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q34	COL4A1	rs4773140-?	NR	5E-15		0.0867953	[0.065-0.109] unit increase	Illumina [19707525] (imputed)	N
1431	chr13	110954236	110954237	rs4773140	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	13q34	COL4A1	rs4773140-G	0.7	3E-9		1.14	[1.09-1.19]	Illumina [5932413] (imputed)	N
1431	chr13	110954352	110954353	rs4773141	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q34	COL4A1, COL4A2	rs4773141-C	0.637	4E-17		0.06	[0.046-0.074] unit decrease	Affymetrix [7947838] (imputed)	N
1431	chr13	110954509	110954510	rs9521686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q34		rs9521686-C	0.688293938	6E-15		0.112868786	[0.085-0.141] unit increase	Illumina [13427135] (imputed)	N
1431	chr13	110954509	110954510	rs9521686	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Ischemic stroke	17,671 Japanese ancestry cases, 192,383 Japanese ancestry controls	NA	13q34		rs9521686-C	0.689587232	5E-9		1.0754218	[1.049576556-1.101903499]	Illumina [8919992] (imputed)	N
1431	chr13	110957871	110957872	rs72655742	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	13q34		rs72655742-G	0.27	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	13q34		rs7989823-C	NR	8E-11		0.0589	[0.041-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	13q34		rs7989823-C	0.625867738	8E-11		0.058856364	[0.041-0.077] unit increase	Illumina [13429980] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	13q34		rs7989823-C	NR	1E-13		0.0627	[0.046-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	13q34		rs7989823-C	0.625867738	1E-13		0.0627215	[0.046-0.079] unit increase	Illumina [13429980] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	13q34		rs7989823-C	0.623443691	4E-10		0.07169753	[0.049-0.094] unit increase	Illumina [13429439] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	13q34		rs7989823-C	NR	4E-9		0.0527	[0.035-0.07] unit increase	Affymetrix, Illumina [25844498] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	13q34	chr13mb110	rs7989823-C	0.565985719	3E-7		0.1654	[0.1-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
1431	chr13	110959642	110959643	rs7989823	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	COL4A2	rs7989823-A		6E-9		0.15	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1431	chr13	110959716	110959717	rs7991332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	13q34		rs7991332-C	NR	7E-20		0.0212	[0.017-0.026] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1431	chr13	110960711	110960712	rs4773144	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	13q34	COL4A1, COL4A2	rs4773144-G	NR	2E-6		1.08	[1.05-1.12]	Illumina [575000] (imputed)	N
1431	chr13	110960711	110960712	rs4773144	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	13q34	COL4A1, COL4A2	rs4773144-G	0.44	4E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1431	chr13	110960942	110960943	rs3809346	22144573	O'Donnell CJ	2011-12-05	Circulation	Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.	Coronary artery calcification	9,961 European ancestry individuals	6,032 European ancestry individuals	13q34	COL4A2	rs3809346-A	NR	9E-7		0.102	[0.061-0.143] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1431	chr13	110991188	110991189	rs1556124	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q34	COL4A2	rs1556124-G	0.225549	2E-8		0.0133027	[0.0086-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1431	chr13	111014432	111014433	rs12867262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q34	COL4A2	rs12867262-G	NR	5E-9		0.0192893	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1431	chr13	111014432	111014433	rs12867262	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q34	COL4A2	rs12867262-G	NR	5E-9		0.0192552	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1431	chr13	111014825	111014826	rs9559779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	13q34		rs9559779-A	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1431	chr13	111015876	111015877	rs872588	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	13q34	COL4A2	rs872588-?	NR	2E-7		0.02	[0.013-0.027] SD units decrease	Affymetrix [13995214] (imputed)	N
1431	chr13	111016885	111016886	rs928111	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q34	NR	rs928111-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1431	chr13	111017783	111017784	rs9521719	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	13q34	COL4A2	rs9521719-G	0.596	1E-7		0.022	[0.014-0.03] unit increase	Affymetrix [~ 10446505] (imputed)	N
1432	chr13	111018728	111018729	rs7333748	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q34	NR	rs7333748-C	NR	5E-8		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1432	chr13	111018728	111018729	rs7333748	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q34	NR	rs7333748-C	NR	2E-6		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1432	chr13	111018728	111018729	rs7333748	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	13q34	NR	rs7333748-C	NR	9E-7		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1432	chr13	111019461	111019462	rs4773169	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	13q34	COL4A2	rs4773169-A	0.6	2E-9		6.02	z-score increase	Affymetrix [4312306] (imputed)	N
1432	chr13	111019786	111019787	rs11617097	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	13q34	COL4A2	rs11617097-G	0.11	7E-6		0.07	[0.031-0.109] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1432	chr13	111020877	111020878	rs7999034	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q34	COL4A2	rs7999034-A	NR	1E-9		0.0193603	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1432	chr13	111025117	111025118	rs4773173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	13q34		rs4773173-G	NR	3E-18		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1432	chr13	111025117	111025118	rs4773173	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q34	COL4A2	rs4773173-A	0.657	5E-13		0.0161	[0.012-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1432	chr13	111025117	111025118	rs4773173	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q34	COL4A2	rs4773173-A	0.657	5E-12		0.0157	[0.011-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1432	chr13	111026733	111026734	rs952359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	13q34	COL4A2	rs952359-A	NR	2E-8		0.0168412	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1432	chr13	111026733	111026734	rs952359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q34	NR	rs952359-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1432	chr13	111028977	111028978	rs750598	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q34	NR	rs750598-A	0.338155	1E-8		0.00516877	[0.0034-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
1432	chr13	111028977	111028978	rs750598	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q34	NR	rs750598-A	0.338155	6E-6		0.00453137	[0.0026-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
1432	chr13	111030577	111030578	rs7319311	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	13q34	NR	rs7319311-?	NR	4E-6		1.2452	[NR]	Affymetrix [722112]	N
1432	chr13	111031179	111031180	rs9521730	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	13q34	COL4A2	rs9521730-A	0.3389	1E-6		0.0086	[0.0047-0.0125] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1432	chr13	111032832	111032833	rs9583489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q34	COL4A2	rs9583489-T	NR	1E-11		0.0236647	[0.017-0.031] unit decrease	Affymetrix [127266] (imputed)	N
1432	chr13	111032832	111032833	rs9583489	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	13q34	NR	rs9583489-C	0.73	1E-17		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
1432	chr13	111032832	111032833	rs9583489	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	13q34	NR	rs9583489-C	0.73	5E-8				Affymetrix [2446094] (imputed)	N
1432	chr13	111033124	111033125	rs9555695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	13q34	COL4A2	rs9555695-T	0.361463	7E-16		0.01897067	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr13	111033124	111033125	rs9555695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34	COL4A2	rs9555695-T	0.361421	7E-12		0.01609814	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1432	chr13	111033124	111033125	rs9555695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	13q34	NR	rs9555695-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1432	chr13	111033124	111033125	rs9555695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	13q34		rs9555695-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1432	chr13	111033703	111033704	rs9515199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q34	COL4A2	rs9515199-C	0.382315	2E-9		0.013606519	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1432	chr13	111036021	111036022	rs9515200	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	13q34	NR	rs9515200-?	NR	3E-7			[NR]	Illumina [5432814] (imputed)	N
1432	chr13	111038324	111038325	rs551473284	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	13q34	COL4A2	rs551473284-T	0.3653	1E-9		0.0132708	[0.009-0.0176] unit decrease	Affymetrix [NR] (imputed)	N
1432	chr13	111038324	111038325	rs551473284	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	13q34	COL4A2	rs551473284-?	NR	2E-9		0.0163	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1432	chr13	111038325	111038326	rs75816352	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q34	NR	rs75816352-C	0.364969	7E-14		0.0151199	[0.011-0.019] unit decrease	Affymetrix [15000001]	N
1432	chr13	111038330	111038331	rs78525785	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q34	COL4A2	rs78525785-T	0.62	1E-17		0.0169	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1432	chr13	111038394	111038395	rs61963197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q34	COL4A2	rs61963197-A	NR	4E-10		0.020335	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1432	chr13	111038802	111038803	rs9521739	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage	1,005 European ancestry cases, 1,711 European ancestry controls	NA	13q34	COL4A2	rs9521739-?	NR	3E-7		1.35	[1.20-1.52]	Affymetrix, Illumina [39235000] (imputed)	N
1432	chr13	111039069	111039070	rs4771674	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	13q34	COL4A2	rs4771674-A	0.378296	1E-10		0.0138161	[0.0096-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1432	chr13	111039948	111039949	rs1999013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	13q34	COL4A2	rs1999013-G	NR	8E-11		0.021236	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1432	chr13	111040680	111040681	rs11838776	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	13q34	COL4A2	rs11838776-A	0.2793	3E-8		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1432	chr13	111040680	111040681	rs11838776	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	13q34	COL4A2	rs11838776-A		8E-11		5.561	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1432	chr13	111040680	111040681	rs11838776	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	13q34	COL4A1, COL4A2	rs11838776-A	0.263277	1E-10		1.07	[1.05- 1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	13q34	COL4A2	rs9515201-A	NR	1E-11		0.0233581	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	13q34	COL4A2	rs9515201-A	0.33	5E-10		1.08	[1.06-1.10]	Affymetrix, Illumina [39235000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	13q34	NR	rs9515201-A	0.3067	5E-15		0.0146	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q34	NA	rs9515201-A	0.3068	7E-11		0.0121	[0.0086-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	13q34	NR	rs9515201-A	0.3068	7E-11		0.0121	[0.0086-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	13q34	COL4A2	rs9515201-A	0.29	1E-7		1.11	[1.07-1.16]	NR [~ 8000000] (imputed)	N
1432	chr13	111040797	111040798	rs9515201	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	13q34	COL4A2	rs9515201-A	0.3	7E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	13q34	COL4A2	rs55940034-G	0.2957	4E-8				Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	13q34	COL4A2	rs55940034-G	0.29	3E-8				Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	13q34	COL4A2	rs55940034-G	NR	1E-8		0.0368	[0.024-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	13q34	COL4A2	rs55940034-G	0.29	5E-9		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	13q34	COL4A2	rs55940034-G	NR	4E-9		0.0368	[0.024-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	13q34	COL4A2	rs55940034-G	0.2962	9E-9		0.0366	[0.024-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	13q34	COL4A2	rs55940034-G	0.26	4E-10		1.06	[1.04-1.07]	Illumina [5167567] (imputed)	N
1432	chr13	111043308	111043309	rs55940034	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	13q34	COL4A2, COL4A1	rs55940034-G	0.27	8E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1432	chr13	111045744	111045745	rs78368565	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q34	COL4A2	rs78368565-?	NR	6E-11		0.0727065	[0.051-0.094] unit decrease	Illumina [19707525] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	13q34		rs9515203-C	NR	2E-14		0.0809	[0.06-0.102] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	13q34		rs9515203-C	NR	5E-10		0.0584	[0.04-0.077] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	13q34	COL4A2	rs9515203-?	NR	5E-27		0.0637295	[0.052-0.075] unit decrease	Illumina [4804024] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	13q34	COL4A2	rs9515203-?	NR	4E-11		0.0922289	[0.065-0.12] unit decrease	Illumina [19707525] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Coronary atherosclerosis (time to event)	19,079 British ancestry cases, 263,792 British ancestry controls	NA	13q34	COL4A241	rs9515203-?	NR	1E-8				NR [~ 24000000] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	13q34	NR	rs9515203-T	0.74	2E-7		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	13q34	COL4A2	rs9515203-T	0.7392	4E-23		0.0596	[0.048-0.071] unit increase	Affymetrix [at least 7947838] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q34	COL4A2	rs9515203-T	0.7393	6E-24		0.0675	[0.054-0.081] unit increase	NR [8041861] (imputed)	N
1432	chr13	111049622	111049623	rs9515203	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q34	COL4A2	rs9515203-T	0.739	6E-24		0.068	[0.054-0.082] unit increase	Affymetrix [7947838] (imputed)	N
1432	chr13	111059566	111059567	rs9559793	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q34	NR	rs9559793-A	0.0959606	5E-10		0.0329905	[0.023-0.043] unit increase	NR [19129689] (imputed)	N
1432	chr13	111062014	111062015	rs4773180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	13q34		rs4773180-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1432	chr13	111064525	111064526	rs1536622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	13q34		rs1536622-C	0.682377	2E-8		0.0171119	[0.011-0.023] unit decrease	Illumina [13478778] (imputed)	N
1432	chr13	111064525	111064526	rs1536622	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	13q34	COL4A2	rs1536622-?	NR	1E-8		0.02285	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
1432	chr13	111067992	111067993	rs1927355	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	13q34	NR	rs1927355-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1432	chr13	111074914	111074915	rs7993934	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	13q34	NR	rs7993934-T	0.65	3E-11		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1432	chr13	111075657	111075658	rs8001158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	13q34		rs8001158-G	NR	3E-10		0.1274	[0.088-0.167] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1432	chr13	111075880	111075881	rs8000189	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	13q34	NR	rs8000189-T	0.64	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1432	chr13	111077244	111077245	rs115760431	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs115760431-C	0.01045	3E-10	(EIF2B1)	0.0319	NR unit increase	Illumina [1671387] (imputed)	N
1432	chr13	111087562	111087563	rs9515212	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Maximum retinal arteriolar tortuosity	3,094 European ancestry individuals	NA	13q34	COL4A2	rs9515212-G	NR	7E-7		0.127	[0.078-0.176] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1432	chr13	111091994	111091995	rs7991229	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Retinal arteriolar tortuosity	3,094 European ancestry individuals	1,413 European ancestry individuals	13q34	COL4A2	rs7991229-G	0.42	5E-12		0.103	[0.059-0.117] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1432	chr13	111094488	111094489	rs12856221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q34	NR	rs12856221-A	0.276081	8E-12		0.014183	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1432	chr13	111094488	111094489	rs12856221	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	13q34	COL4A2	rs12856221-A	0.2624	4E-8		0.0052	[0.0032-0.0072] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1432	chr13	111096036	111096037	rs61963240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	13q34		rs61963240-G	NR	2E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1432	chr13	111107639	111107640	rs9515214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q34		rs9515214-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1432	chr13	111114553	111114554	rs41275110	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	13q34	NR	rs41275110-A	0.197374	2E-9		0.0232512	[0.016-0.031] unit decrease	NR [19129689] (imputed)	N
1432	chr13	111115557	111115558	rs9521787	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	13q34	COL4A2	rs9521787-C	0.39	2E-17		8.5	z-score increase	Affymetrix [4311822] (imputed)	N
1432	chr13	111116989	111116990	rs9555704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q34		rs9555704-G	NR	6E-23		0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1432	chr13	111117517	111117518	rs117883920	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	13q34	NR	rs117883920-G	0.02178	3E-7		0.5363	[0.33-0.74] unit decrease	Illumina [10677593] (imputed)	N
1432	chr13	111121619	111121620	rs9583500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q34	NR	rs9583500-T	NR	2E-9		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1432	chr13	111123111	111123112	rs9555705	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q34	COL4A2	rs9555705-?		5E-6				Illumina [4322238] (imputed)	N
1432	chr13	111124970	111124971	rs9559817	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	13q34	NR	rs9559817-A	NR	1E-6	(GEE model)	0.45677	[0.27-0.64] unit decrease	NR [NR] (imputed)	N
1432	chr13	111143600	111143601	rs117412802	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	13q34		rs117412802-?	NR	4E-7		1.56648	[1.39-1.74]	NR [674885]	N
1432	chr13	111145072	111145073	rs368584	32755526	D'Urso S	2020-08-05	Twin Res Hum Genet	Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.	Septic shock (28-day mortality)	90 European ancestry cases, 403 European ancestry controls	NA	13q34	COL4A2	rs368584-G	0.39	3E-7		2.56	[2.21-2.91]	Illumina [7590211] (imputed)	N
1432	chr13	111145309	111145310	rs2274545	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	13q34	COL4A2	rs2274545-?	NR	8E-6				Illumina [622468]	N
1433	chr13	111186336	111186337	rs58927807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q34		rs58927807-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1433	chr13	111189672	111189673	rs56378310	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	13q34	RAB20	rs56378310-?		2E-6		2.98	[1.8-4.16] unit decrease	Illumina [5908215] (imputed)	N
1433	chr13	111191812	111191813	rs4393429	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	13q34	RAB20	rs4393429-C	0.25643279922455	9E-9		0.03	[0.02-0.04] SD decrease	Illumina [22400000] (imputed)	N
1433	chr13	111206225	111206226	rs9521838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	13q34		rs9521838-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1433	chr13	111215536	111215537	rs67721460	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q34	ING1	rs67721460-T	0.74140625	4E-6	(ING1, 3888_8_1)	0.12986	[0.075-0.185] unit decrease	Illumina [> 1000000] (imputed)	N
1433	chr13	111222001	111222002	rs11618113	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	13q34	Intergenic	rs11618113-T	NR	1E-6		0.0284901	[0.017-0.04] unit decrease	Illumina [13519193] (imputed)	N
1433	chr13	111222001	111222002	rs11618113	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	13q34	Intergenic	rs11618113-T	NR	7E-7		0.0264301	[0.016-0.037] unit decrease	Illumina [13520550] (imputed)	N
1434	chr13	111295694	111295695	rs7324648	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	13q34	NR	rs7324648-A	NR	5E-10		0.0305	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1434	chr13	111297951	111297952	rs373373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q34		rs373373-A	NR	2E-10		0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1434	chr13	111297951	111297952	rs373373	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q34	NR	rs373373-A	0.9480808000000001	1E-9		0.011126	[0.0074-0.0149] unit increase	Affymetrix [16582909] (imputed)	N
1434	chr13	111299999	111300000	rs421491	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	13q34	CARS2	rs421491-T	0.95	3E-11		6.65	z-score increase	Affymetrix [4314223] (imputed)	N
1434	chr13	111308792	111308793	rs9670064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	13q34		rs9670064-A	NR	6E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1434	chr13	111329588	111329589	rs74125032	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		CARS2	rs74125032-T	0.002	2E-10		4.49847E-10	[0.000000000000577807-0.000000350225}	Illumina [1465938] (imputed)	N
1434	chr13	111343887	111343888	rs2119480	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	13q34	CARS2	rs2119480-?	NR	2E-6	(Male, Post-puberty)	0.131	[0.076-0.186] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1434	chr13	111367649	111367650	rs1441043	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	13q34	NR	rs1441043-A	0.253985	6E-10		0.0142456	[0.0097-0.0188] unit decrease	NR [NR]	N
1434	chr13	111369621	111369622	rs61969071	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q34	ING1	rs61969071-?	NR	3E-9	(female)	6.0	[2.90-12.56]	Illumina [NR] (imputed)	N
1434	chr13	111372679	111372680	rs74125084	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	13q34	CARS2	rs74125084-T	0.0058	1E-7		1.058E-4	NR	Illumina [1465938] (imputed)	N
1434	chr13	111377098	111377099	rs9559864	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q34	ING1	rs9559864-?	NR	8E-8	(female)	5.0	[2.63-12.5]	Illumina [NR] (imputed)	N
1434	chr13	111383426	111383427	rs9515273	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q34	NR	rs9515273-C	NR	5E-10		0.0176	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1434	chr13	111385160	111385161	rs9583531	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q34	intergenic	rs9583531-T	0.8203	5E-8		0.0448	[0.029-0.061] unit decrease	NR [8041861] (imputed)	N
1434	chr13	111390266	111390267	rs61969075	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	13q34	ING1	rs61969075-?	NR	2E-9	(female)	5.9	[2.83-12.40]	Illumina [NR] (imputed)	N
1435	chr13	111448657	111448658	rs4438172	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	13q34	intergenic	rs4438172-A	0.25	9E-7		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1435	chr13	111449114	111449115	rs167890	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	13q34	C13orf29	rs167890-A	0.042	5E-6	(Diet fat )	0.0	[NR] %energy increase	Illumina [899892]	N
1435	chr13	111470037	111470038	rs767210	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	13q34	RP11-120J20.1	rs767210-?	0.1089	3E-7	(PAL6)			Illumina [475971]	N
1435	chr13	111522257	111522258	rs2277425	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	13q34	NR	rs2277425-G	0.109	8E-6	(EA)	0.075	[0.042-0.108] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1435	chr13	111522419	111522420	rs2277424	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Paceibacteria abundance in stool	5,959 Finnish ancestry individuals	NA	13q34		rs2277424-T	0.0747528	3E-8		0.0245989	[0.016-0.033] unit decrease	Illumina [7980478] (imputed)	N
1435	chr13	111529618	111529619	rs9559901	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q34	ANKRD10	rs9559901-A	0.661359	2E-8		0.0116984	[0.0076-0.0158] unit decrease	Affymetrix [NR] (imputed)	N
1435	chr13	111539924	111539925	rs9521975	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	13q34	ANKRD10	rs9521975-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1436	chr13	111549457	111549458	rs67357970	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	13q34	NR	rs67357970-G	0.123	1E-6		615.76	[369.98-861.54] unit increase	Illumina [27449291] (imputed)	N
1436	chr13	111555591	111555592	rs9521987	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	13q34	NR	rs9521987-A	NR	3E-8		5.543	z score increase	Affymetrix [10847151] (imputed)	N
1436	chr13	111557398	111557399	rs7987467	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	13q34	LINC00346	rs7987467-A	0.407619	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
1436	chr13	111559790	111559791	rs60868252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs60868252-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1436	chr13	111566411	111566412	rs9583546	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	13q34	NR	rs9583546-G	NR	3E-6		0.00661	[0.0039-0.0094] unit decrease	NR [11010159] (imputed)	N
1436	chr13	111566411	111566412	rs9583546	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	13q34	NR	rs9583546-G	NR	4E-8		0.00586789	[0.0038-0.008] unit decrease	NR [11010159] (imputed)	N
1436	chr13	111566411	111566412	rs9583546	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	13q34	NR	rs9583546-G	NR	5E-8	(adjusted for BMI)	0.00576	[0.0037-0.0078] unit decrease	NR [11010159] (imputed)	N
1436	chr13	111574089	111574090	rs74685498	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	13q34	ANKRD10	rs74685498-A	0.0152751920871364	8E-6	(F_Desulfovibrionaceae_HB)	1.04671	[0.59-1.51] unit decrease	Illumina [7711310] (imputed)	N
1436	chr13	111583421	111583422	rs9521997	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	13q34	NR	rs9521997-G	0.145542	2E-6				Illumina [5378266] (imputed)	N
1437	chr13	111678641	111678642	rs11490380	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	13q34	ARHGEF, LINC00431	rs11490380-?	NR	4E-6		2.16		Illumina [6778521] (imputed)	N
1437	chr13	111723193	111723194	rs914554	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	13q34	NR	rs914554-?	NR	4E-21				Affymetrix [NR]	N
1437	chr13	111781059	111781060	rs12853515	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA		ARHGEF7	rs12853515-G	0.14	2E-6	(Carbohydrate)			Affymetrix [590000]	N
1437	chr13	111781059	111781060	rs12853515	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA		ARHGEF7	rs12853515-G	0.14	4E-6	(Carbohydrate)			Affymetrix [590000]	N
1438	chr13	111807631	111807632	rs72670024	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	13q34	ARHGEF7	rs72670024-C	0.01	9E-7	(EA)	1.33	[0.8-1.86] unit decrease	Illumina [up to 13042663] (imputed)	N
1438	chr13	111818831	111818832	rs4773330	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	13q34	ARHGEF7	rs4773330-A	0.12	8E-6		0.04	[0.02-0.06] umol/l decrease in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
1438	chr13	111834030	111834031	rs942653	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q34	NR	rs942653-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1438	chr13	111848419	111848420	rs9522155	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	13q34	NR	rs9522155-?	NR	9E-6		0.0077209	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1438	chr13	111849486	111849487	rs11618508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q34		rs11618508-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1438	chr13	111893412	111893413	rs7985441	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	13q34	ARHGEF7	rs7985441-?	NR	9E-12		0.4621	[0.32-0.6] unit increase	Affymetrix [11100000] (imputed)	N
1438	chr13	111933997	111933998	rs7983485	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Choroid plexus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q34	ARHGEF7	rs7983485-?		3E-6				Illumina [4322238] (imputed)	N
1439	chr13	111955941	111955942	rs3825460	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,534 Han Chinese ancestry women	964 European ancestry women	13q34	ARHGEF7	rs3825460-?	0.07	4E-8	(Dominant, size of pigmented spots on cheek, East Asian)	0.53	NR unit increase	Illumina [6328611] (imputed)	N
1439	chr13	111970211	111970212	rs9522180	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q34	TEX29	rs9522180-C	0.446551	2E-11		0.00923593	[0.0065-0.0119] unit increase	Affymetrix [12370749]	N
1439	chr13	111971622	111971623	rs2477467	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	13q34	NR	rs2477467-T	0.2353	5E-10		0.018092714	[0.012-0.024] unit increase	Affymetrix [10549349] (imputed)	N
1439	chr13	111977279	111977280	rs9522183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q34		rs9522183-T	NR	2E-11		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1439	chr13	111982290	111982291	rs1536053	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	13q34	NR	rs1536053-C	0.6843	6E-9		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1439	chr13	111982290	111982291	rs1536053	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q34	NA	rs1536053-T	0.3104	8E-11		0.0122	[0.0085-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1439	chr13	111984243	111984244	rs2479958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q34	NR	rs2479958-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1439	chr13	112008726	112008727	rs72655828	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	13q34	TEX29	rs72655828-T	0.06376	7E-6	(African)			Illumina [4404269] (imputed)	N
1439	chr13	112023918	112023919	rs75188657	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs75188657-A	0.01568	2E-10	(PREP)	0.04008	NR unit increase	Illumina [1671387] (imputed)	N
1439	chr13	112056063	112056064	rs7324141	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	13q34		rs7324141-A	0.5	2E-6				Illumina [NR] (imputed)	N
1440	chr13	112075343	112075344	rs7336690	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	13q34	NR	rs7336690-G	0.0542	7E-6		0.1387	[0.078-0.199] unit decrease	Illumina [up to 1980188] (imputed)	N
1440	chr13	112082512	112082513	rs11619721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q34		rs11619721-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1440	chr13	112103901	112103902	rs118166185	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	13q34	TEX29, LINC00354	rs118166185-G	0.956338421	5E-6		1.2207745	[1.12-1.33]	Illumina [10439017] (imputed)	N
1440	chr13	112115590	112115591	rs138646839	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	13q34		rs138646839-T	0.0052199	1E-7		1.68		Affymetrix [15611556] (imputed)	N
1440	chr13	112143706	112143707	rs1163825	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	13q34	NR	rs1163825-A	NR	2E-6		29700.0	unit increase	Affymetrix, Perlegen [1785543] (imputed)	N
1440	chr13	112179952	112179953	rs2026174	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	13q34	C13orf16	rs2026174-T	0.504	8E-10		0.0227	[0.015-0.03] unit increase	Illumina [~ 250000] (imputed)	N
1440	chr13	112181436	112181437	rs9555810	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	13q34	C13orf16, ARHGEF7	rs9555810-G	0.28	6E-8		2.3	[1.52-3.08] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1440	chr13	112183347	112183348	rs9560113	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	13q34	TEX29	rs9560113-G	0.28	2E-17		0.05	[0.038-0.062] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1440	chr13	112187881	112187882	rs9560114	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	13q34	NR	rs9560114-T	0.2435	3E-8		0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1440	chr13	112187881	112187882	rs9560114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	13q34		rs9560114-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1440	chr13	112188235	112188236	rs2528787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	13q34		rs2528787-T	NR	5E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1440	chr13	112188235	112188236	rs2528787	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	13q34	NR	rs2528787-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1440	chr13	112188235	112188236	rs2528787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	13q34		rs2528787-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1440	chr13	112191777	112191778	rs35413307	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	13q34	TEX29, SOX1	rs35413307-?	NR	1E-8		0.026	[0.017-0.034] unit increase	Illumina [12039492]	N
1440	chr13	112196366	112196367	rs9522267	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	13q34	intergenic	rs9522267-?	NR	4E-10		1.0869565	[NR]	NR [352000]	N
1441	chr13	112217107	112217108	rs9515446	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		13q34	RP11-65D24.2	rs9515446-A	0.552223	2E-12		0.00969209	[0.007-0.0124] unit decrease	Affymetrix [12370749]	N
1441	chr13	112218923	112218924	rs12868881	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	13q34	NR	rs12868881-A	0.4074	5E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1441	chr13	112218923	112218924	rs12868881	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	13q34	NA	rs12868881-A	0.4066	1E-15		0.0138	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1441	chr13	112218923	112218924	rs12868881	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	13q34	NA	rs12868881-A	0.4066	1E-15		0.0138	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1441	chr13	112221296	112221297	rs7333181	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	13q34	ARHGEF7, LOC121793	rs7333181-A	0.12	3E-8		0.52	[0.34-0.70] years increase	Illumina [315418]	N
1441	chr13	112225700	112225701	rs1163627	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	13q34	NA	rs1163627-A	0.5446	3E-9		0.0104	[0.0071-0.0137] unit increase	NR [~ 27400000] (imputed)	N
1441	chr13	112226419	112226420	rs1163628	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	13q34	TEX29, SOX1	rs1163628-C	0.14280000000000004	4E-9		1.0291158		Affymetrix [11880941] (imputed)	N
1441	chr13	112228862	112228863	rs2481118	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	13q34	NR	rs2481118-C	0.56	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1441	chr13	112238858	112238858	rs11392435	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	13q34	LOC105370369	rs11392435-C	0.472369	4E-8		0.0173023	[0.011-0.023] unit increase	NR [16426330] (imputed)	N
1441	chr13	112245312	112245313	rs2774430	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q34	RP11-65D24.2	rs2774430-A	0.439394	4E-8		0.0112023	[0.0072-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1441	chr13	112250414	112250415	rs77197064	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	13q34		rs77197064-G	0.942	3E-6		0.116	[0.067-0.165] unit increase	Affymetrix [6030650] (imputed)	N
1443	chr13	112550951	112550952	rs7329216	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Barnesiellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	13q34		rs7329216-A	0.438619	3E-8		0.11095	[0.072-0.15] unit decrease	Illumina [7980478] (imputed)	N
1443	chr13	112550951	112550952	rs7329216	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Barnesiella abundance in stool	5,959 Finnish ancestry individuals	NA	13q34		rs7329216-A	0.438619	3E-8		0.116705	[0.075-0.158] unit decrease	Illumina [7980478] (imputed)	N
1443	chr13	112575603	112575604	rs9577381	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	13q34	intergenic	rs9577381-A	0.3263	2E-6		0.0714	[0.042-0.101] unit decrease	Illumina [2500000] (imputed)	N
1443	chr13	112585031	112585032	rs149383020	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	13q34	intergenic	rs149383020-A	0.0341	5E-7		0.0787	NR unit increase	NR [NR] (imputed)	N
1444	chr13	112614833	112614837	rs142808372	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	13q34	AL136302.1	rs142808372-T	0.0217	5E-6		0.3385	[0.19-0.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1444	chr13	112707953	112707954	rs2147141	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q34	C13orf16/SOX1	rs2147141-G	0.543173	1E-7		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1444	chr13	112707953	112707954	rs2147141	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	13q34	C13orf16/SOX1	rs2147141-G	0.543173	7E-9		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
1445	chr13	112723111	112723111	rs137969745	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	13q34	NR	rs137969745-C	0.910654	7E-17		0.0446981	[0.034-0.055] unit increase	Affymetrix [16577424] (imputed)	N
1445	chr13	112725195	112725196	rs3742223	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	13q34	NR	rs3742223-T	0.903519	3E-10		0.0299981	[0.02-0.04] unit increase	Affymetrix [16577313] (imputed)	N
1445	chr13	112750960	112750961	rs944899	25234806	Dijkstra AE	2014-09-18	Eur Respir J	Dissecting the genetics of chronic mucus hypersecretion in smokers with and without COPD.	Chronic mucus hypersecretion	342 European ancestry cases, 1,006 European ancestry controls	130 European ancestry cases, 2,313 European ancestry controls	13q34	SOX1	rs944899-A	0.46	8E-6		1.4	[NR]	Illumina [522636]	N
1445	chr13	112836654	112836655	rs9324268	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	13q34	intergenic	rs9324268-C	0.4564	5E-6		0.3737	[0.21-0.53] unit increase	Illumina [at least 4683137] (imputed)	N
1445	chr13	112836654	112836655	rs9324268	23432519	O'Brien RP	2013-02-21	Clin Transplant	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		13q34	NR	rs9324268-A	NR	2E-6	(Five-year creatinine)	0.1738	[NR] unit increase	Illumina [511662]	N
1446	chr13	112859828	112859829	rs7322849	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q34		rs7322849-T	NR	2E-8		5.6360135	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1446	chr13	112859828	112859829	rs7322849	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q34		rs7322849-T	NR	1E-8		5.7170835	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1446	chr13	112859828	112859829	rs7322849	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q34		rs7322849-T	NR	2E-8		5.6360135	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1446	chr13	112859828	112859829	rs7322849	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	13q34		rs7322849-T	NR	6E-7		4.9846334	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1446	chr13	112876942	112876943	rs2118226	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	13q34	NR	rs2118226-G		9E-6		0.1494	[0.084-0.215] SD units increase	NR [10700000] (imputed)	N
1446	chr13	112900218	112900219	rs865897814	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Prothrombin time	5,989 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	13q34		rs865897814-C	0.012	6E-13		0.58	[0.42-0.74] unit increase	Illumina [7880617]	N
1446	chr13	112900218	112900219	rs865897814	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	International normalisation ratio	5,987 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	13q34		rs865897814-C	0.012	2E-11		0.55	[0.39-0.71] unit increase	Illumina [7880617]	N
1446	chr13	112983287	112983288	rs754168	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	smoking initiation in schizophrenia	5,255 European ancestry individuals	1,802 East Asian individuals	13q34	LINC01044	rs754168-?	NR	5E-7				NR [9500000] (imputed)	N
1447	chr13	113020756	113020757	rs9577729	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	13q34	SOX1, C13orf28	rs9577729-G	0.01	6E-6		5.91	[2.48-14.05]	Illumina [1556551]	N
1448	chr13	113115555	113115556	rs75590369	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	13q34	NR	rs75590369-?	NR	5E-7		5.031	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1448	chr13	113124320	113124321	rs7329323	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	13q34	NR	rs7329323-C	0.0597	4E-7		0.8352	[0.51-1.16] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1449	chr13	113274811	113274812	rs7325069	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	13q34	NR	rs7325069-G	0.62	3E-6		1.63	[1.33-1.99]	Illumina [17125421] (imputed)	N
1449	chr13	113279597	113279598	rs114233315	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	13q34		rs114233315-?	NR	9E-6		1.0829327	[1.04553621064164-1.12166682856826]	Illumina [up to 7827597] (imputed)	N
1449	chr13	113308399	113308400	rs61961079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q34	NR	rs61961079-G	NR	9E-12		0.04	[0.028-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1449	chr13	113331867	113331868	rs7998202	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	13q34	ATP11A, TUBGCP3	rs7998202-G	0.14	5E-9		0.03	[0.02-0.04] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1449	chr13	113351661	113351662	rs282587	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	13q34	ATP11A	rs282587-G	0.1513	2E-12		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q34		rs76533333-G	NR	5E-9		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q34		rs76533333-G	NR	3E-92		0.0801	[0.072-0.088] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	13q34	ATP11A	rs76533333-A	0.9153	3E-29		0.0265	[0.022-0.031] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q34	ATP11A	rs76533333-G	0.088693	2E-14		0.029812468	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q34	ATP11A	rs76533333-G	0.0886980000000001	5E-10		0.024490949	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs76533333-A	0.912056	8E-107				Affymetrix, Illumina [22063850] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q34	NR	rs76533333-A	0.911546	2E-108		0.073694	[0.067-0.08] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs76533333-G	0.0731009	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q34	NR	rs76533333-G	0.088008	2E-17		0.027894	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	13q34	ATP11A	rs76533333-G	NR	8E-22		0.0634789	[0.05-0.077] unit increase	Affymetrix [16832071] (imputed)	N
1449	chr13	113352915	113352916	rs76533333	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	13q34	ATP11A	rs76533333-G	0.0896	4E-28		0.06819043	[0.056-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1449	chr13	113360937	113360938	rs34011672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q34	ATP11A	rs34011672-G	0.088548	4E-10		0.024508538	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113360937	113360938	rs34011672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs34011672-G	0.0739884	1E-24				Affymetrix, Illumina [24246363] (imputed)	N
1449	chr13	113360937	113360938	rs34011672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	13q34	ATP11A	rs34011672-G	0.0894	1E-9		0.038104	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	13q34		rs71446622-G	0.91	6E-12		0.13	[0.1-0.17] % increase	Affymetrix [NR] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q34	ATP11A	rs71446622-A	0.089341	4E-21		0.0357488	[0.029-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q34	ATP11A	rs71446622-A	0.089325	1E-20		0.03615953	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	13q34	NR	rs71446622-A	0.088588	2E-26		0.034282	[0.028-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q34		rs71446622-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1449	chr13	113365479	113365480	rs71446622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q34	ATP11A	rs71446622-A	0.0904	6E-10		0.0380314	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q34	ATP11A	rs12876143-C	0.088653	4E-17		0.033254474	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	13q34	ATP11A	rs12876143-C	0.088654	2E-12		0.027737543	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	ATP11A	rs12876143-C	0.08861	5E-81		0.07459317	[0.067-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q34	ATP11A	rs12876143-C	0.088631	1E-12		0.027833812	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q34		rs12876143-?	NR	4E-97				NR [~ 8900000] (imputed)	N
1449	chr13	113366290	113366291	rs12876143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs12876143-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1449	chr13	113369974	113369975	rs35745507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q34	NR	rs35745507-G	0.093199	4E-12		0.02214	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1450	chr13	113378289	113378290	rs73576459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs73576459-G	0.0122	2E-8	(LYPLAL1)	0.02742	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113378289	113378290	rs73576459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs73576459-G	0.0122	1E-8	(UCHL3)	0.01846	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113378289	113378290	rs73576459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs73576459-G	0.0122	1E-8	(PRDX5)	0.5474	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113378289	113378290	rs73576459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs73576459-G	0.0122	1E-8	(MACROD1)	0.01515	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113379929	113379930	rs282595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q34	NR	rs282595-A	NR	1E-47		0.0478	[0.041-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	7E-9	(MACROD1)	0.01725	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	6E-9	(PRDX5)	0.6266	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	6E-9	(CFL2)	0.1436	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	4E-9	(RAB11B)	0.1393	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	3E-10	(UCHL3)	0.02272	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	2E-9	(DUSP3)	0.07485	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	1E-9	(HINT1)	0.3261	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	1E-8	(RHOA)	0.2273	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113432438	113432440	rs151169120	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs151169120-A	0.01045	1E-8	(GCLC)	0.1344	NR unit decrease	Illumina [1671387] (imputed)	N
1450	chr13	113479819	113479820	rs368865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q34	ATP11A	rs368865-G	0.725485	2E-10		0.015990846	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr13	113479819	113479820	rs368865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	ATP11A	rs368865-G	0.725527	1E-29		0.028148087	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1450	chr13	113479819	113479820	rs368865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q34	ATP11A	rs368865-G	0.725535	2E-12		0.0172592	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr13	113479819	113479820	rs368865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q34	ATP11A	rs368865-G	0.725494	8E-11		0.016104199	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr13	113479819	113479820	rs368865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q34	ATP11A	rs368865-G	0.725546	2E-10		0.015975399	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr13	113479819	113479820	rs368865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q34		rs368865-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1450	chr13	113479819	113479820	rs368865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs368865-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1450	chr13	113479819	113479820	rs368865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q34		rs368865-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1450	chr13	113479819	113479820	rs368865	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	13q34	ATP11A	rs368865-G	0.724	2E-9		0.0247561	[0.016-0.033] unit increase	Affymetrix [16832071] (imputed)	N
1450	chr13	113507542	113507543	rs72660056	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	13q34	ATP11A	rs72660056-A	0.06823	4E-6		3.29105	[1.89-4.69] unit decrease	Illumina [6716580] (imputed)	N
1451	chr13	113533650	113533651	rs1765871	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	13q34	ATP11A	rs1765871-A	0.547416	3E-8		1.0526316	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
1451	chr13	113533650	113533651	rs1765871	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	13q34	ATP11A	rs1765871-A	0.533893	2E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1451	chr13	113534381	113534382	rs1278766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	13q34		rs1278766-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1451	chr13	113534906	113534907	rs9577174	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	13q34	ATP11A	rs9577174-T	0.558531	2E-8				Affymetrix, Illumina [NR] (imputed)	N
1451	chr13	113534983	113534984	rs9577395	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	13q34	ATP11A	rs9577395-C	0.793	1E-10		1.2987013	[1.2-1.41]	Affymetrix, Illumina [10790934] (imputed)	N
1451	chr13	113535948	113535949	rs1278768	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	13q34	MCF2L	rs1278768-C	0.512396	6E-12		1.0686044	NR	Affymetrix, Illumina [NR] (imputed)	N
1451	chr13	113536626	113536627	rs1278769	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	13q34	ATP11A	rs1278769-G	0.76	7E-9		1.27	[1.14-1.39]	Illumina [439828]	N
1451	chr13	113537447	113537448	rs3742233	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	13q34	NR	rs3742233-A	NR	1E-16		0.071	[0.022-0.12] unit decrease	Affymetrix [8351141] (imputed)	N
1451	chr13	113568199	113568200	rs3011504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q34	NR	rs3011504-A	NR	1E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1451	chr13	113582129	113582130	rs1933199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	MCF2L	rs1933199-C	0.41424	1E-10		0.014708512	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1451	chr13	113631779	113631780	rs1317507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	13q34	MCF2L, MCF2L-AS1	rs1317507-A	0.2608	8E-12		0.0398	[0.028-0.051] unit increase	Affymetrix [at least 7947838] (imputed)	N
1451	chr13	113631779	113631780	rs1317507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	13q34	MCF2L, MCF2L-AS1	rs1317507-A	0.2619	8E-12		0.0434	[0.031-0.056] unit increase	NR [8041861] (imputed)	N
1451	chr13	113634936	113634937	rs3011549	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	MCF2L	rs3011549-A		1E-11		0.326	unit increase	Affymetrix [at least 2696785] (imputed)	N
1451	chr13	113634936	113634937	rs3011549	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	MCF2L	rs3011549-A		5E-8		0.174	unit increase	Affymetrix [at least 2696785] (imputed)	N
1451	chr13	113634936	113634937	rs3011549	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	MCF2L	rs3011549-A		3E-6		0.137	unit increase	Affymetrix [at least 2696785] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q34		rs9549328-T	NR	4E-11		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q34		rs9549328-T	NR	5E-17		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	13q34	MCF2L	rs9549328-?	NR	9E-9		0.0328954	[0.022-0.044] unit increase	Illumina [4804024] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q34		rs9549328-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q34		rs9549328-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	MCF2L	rs9549328-T	0.2246	1E-11		0.2665	[0.19-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	MCF2L	rs9549328-T	0.2244	1E-11		0.1996	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
1451	chr13	113636155	113636156	rs9549328	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	13q34	MCF2L	rs9549328-T	0.23	2E-8		0.318	[0.2-0.44] unit increase	Affymetrix [~ 9800000] (imputed)	N
1452	chr13	113659107	113659108	rs4907479	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	13q34	NR	rs4907479-?	NR	3E-6		1.13	[1.07-1.18]	Illumina [462190]	N
1452	chr13	113659705	113659706	rs12019546	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	13q34	MCF2L	rs12019546-A	0.256	5E-7		0.038	[0.022-0.054] unit increase	Affymetrix [7947838] (imputed)	N
1452	chr13	113694508	113694509	rs11842874	21871595	Day-Williams AG	2011-08-25	Am J Hum Genet	A variant in MCF2L is associated with osteoarthritis.	Osteoarthritis	3,177 European ancestry cases, 4,894 European ancestry controls	15,864 European ancestry cases, 19,610 European ancestry controls	13q34	MCF2L	rs11842874-A	0.07	2E-8		1.17	[1.11-1.23]	NR [7258070] (imputed)	N
1452	chr13	113697670	113697671	rs117989138	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs117989138-A	0.02	4E-22		0.086	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113697963	113697964	rs75004145	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs75004145-A	0.0122	7E-9	(PCBD1)	0.1066	NR unit increase	Illumina [1671387] (imputed)	N
1452	chr13	113728497	113728498	rs36086577	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs36086577-C	0.87	2E-19		0.035	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113734375	113734376	rs71446935	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs71446935-A	0.31	6E-38		0.035	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113752056	113752057	rs1046205	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs1046205-A	0.79	4E-573		0.121	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113752830	113752831	rs10665	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	13q34	NR	rs10665-?		4E-10	(IL23A)			Illumina [NR]	N
1452	chr13	113752830	113752831	rs10665	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	13q34	NR	rs10665-?		1E-26	(F7)	0.5965	[NR] unit decrease	Illumina [NR]	N
1452	chr13	113752830	113752831	rs10665	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q34	F7/F10	rs10665-A	0.878	2E-47	(FVII:C)	0.847	[0.73-0.96] unit increase	Illumina [NR] (imputed)	N
1452	chr13	113753163	113753164	rs2181540	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q34	F7/F10	rs2181540-T	0.876	1E-46	(FVII:C)	0.834	[0.72-0.95] unit increase	Illumina [NR] (imputed)	N
1452	chr13	113753238	113753239	rs2480952	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs2480952-T	0.82	1E-478	(EA)	0.147	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113755443	113755444	rs2476322	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	13q34	NR	rs2476322-?	NR	9E-48		0.08743	[0.076-0.099] unit decrease novel	Illumina [6108953] (imputed)	N
1452	chr13	113756539	113756540	rs555212	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F7	5,337 Icelandic ancestry individuals	NA	13q34		rs555212-A	0.2706	4E-66		0.3165	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
1452	chr13	113756539	113756540	rs555212	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q34	F7/F10	rs555212-G	0.768	1E-15	(FVII:C)	0.367	[0.28-0.46] unit decrease	Illumina [NR] (imputed)	N
1452	chr13	113757191	113757192	rs1755685	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	13q34	NR	rs1755685-?	NR	1E-92	(Coagulation Factor VII)			Illumina [~ 4000000] (imputed)	N
1452	chr13	113757191	113757192	rs1755685	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs1755685-C	0.82	2E-58	(AA)	0.111	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113760033	113760034	rs561241	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs561241-T	0.87	7E-654		0.15	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1452	chr13	113760033	113760034	rs561241	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Prothrombin time	2,583 European ancestry individuals	986 European ancestry individuals	13q34	F7	rs561241-C	NR	4E-56		0.035	[0.029-0.041] unit increase	Illumina [~ 2500000] (imputed)	N
1452	chr13	113760033	113760034	rs561241	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	13q34	MCF2L, AB116074, AK092739, AK123267, AB002360, F7, CR603372, F10, PROZ	rs561241-?	0.12	5E-16				Affymetrix [70897]	N
1452	chr13	113763925	113763926	rs1475931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q34	F10	rs1475931-G	0.82546875	6E-6	(F10, 3077_66_2)	0.14360902	[0.081-0.206] unit decrease	Illumina [> 1000000] (imputed)	N
1452	chr13	113763925	113763926	rs1475931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q34	F10	rs1475931-G	0.82546875	2E-6	(F10, 4878_3_1)	0.15178676	[0.089-0.214] unit decrease	Illumina [> 1000000] (imputed)	N
1452	chr13	113769916	113769917	rs569557	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	13q34	F7	rs569557-G	0.88	6E-600		0.157	[0.15-0.16] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1453	chr13	113770875	113770876	rs488703	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	13q34	F7	rs488703-G	0.89046875	2E-191	(F7, 3184_25_2)	1.0860726	[1.02-1.15] unit increase	Illumina [> 1000000] (imputed)	N
1453	chr13	113770875	113770876	rs488703	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	NR	rs488703-?	NR	1E-63	(EA, Coagulation Factor VII)			Affymetrix [509946]	N
1453	chr13	113770875	113770876	rs488703	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Factor VII levels	15,422 European ancestry individuals	Up to 7,604 European ancestry individuals	13q34	F7	rs488703-?	NR	9E-256				Affymetrix, Illumina [2734954] (imputed)	N
1453	chr13	113772706	113772707	rs6041	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	13q34		rs6041-A	0.11	4E-13		0.1011	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1453	chr13	113772706	113772707	rs6041	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	13q34	F7	rs6041-?	NR	5E-246		0.3987	[0.38-0.42] unit increase novel	Illumina [6108953] (imputed)	N
1453	chr13	113772706	113772707	rs6041	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q34	F7/F10	rs6041-G	0.892	2E-45	(FVII:C)	0.877	[0.76-1] unit increase	Illumina [NR] (imputed)	N
1453	chr13	113776217	113776218	rs474671	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	NR	rs474671-?	NR	6E-65	(EA, Coagulation Factor VII)			Affymetrix [509946]	N
1453	chr13	113776370	113776371	rs563064	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	13q34		rs563064-A	0.01	5E-8		2.98	[2.01-4.41]	Illumina [9962324] (imputed)	N
1453	chr13	113777508	113777509	rs3211719	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	13q34	NR	rs3211719-?	NR	1E-12		0.0454	[0.033-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1453	chr13	113781941	113781942	rs776905	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	F10, F10-AS1, KARSP2	rs776905-C	0.1128385	9E-65	(Coagulation Factor VII)	1.104	[0.99-1.22] unit decrease	Affymetrix [509946]	N
1453	chr13	113784997	113784998	rs3211744	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	13q34	NR	rs3211744-?	NR	2E-11		0.05214	[0.037-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1453	chr13	113786946	113786947	rs483743	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	13q34	NR	rs483743-?		1E-6		3.82	[2.36-5.28] unit increase	Illumina [~ 4900000] (imputed)	N
1453	chr13	113786946	113786947	rs483743	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	13q34	NR	rs483743-?	NR	1E-6		0.05715	[0.034-0.08] unit increase novel	Illumina [6108953] (imputed)	N
1453	chr13	113787458	113787459	rs3211752	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	13q34	NR	rs3211752-?	NR	1E-7		0.0582	[0.037-0.08] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1453	chr13	113792169	113792170	rs547138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F10	5,366 Icelandic ancestry individuals	NA	13q34		rs547138-T	0.4404	6E-20		0.168073	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113792169	113792170	rs547138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F10	5,364 Icelandic ancestry individuals	NA	13q34		rs547138-T	0.4404	8E-21		0.171126	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113792169	113792170	rs547138	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	F10	rs547138-A	0.615	9E-20	(Coagulation Factor X, F10.4878.3.1)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1453	chr13	113792169	113792170	rs547138	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	F10	rs547138-A	0.615	6E-22	(Coagulation factor Xa, F10.3077.66.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1453	chr13	113793848	113793849	rs3211770	23381943	Williams FM	2013-01-01	Ann Neurol	Ischemic stroke is associated with the ABO locus: the EuroCLOT study.	End-stage coagulation	2,100 European ancestry individuals	NA	13q34	F7/F10	rs3211770-G	0.879	3E-19	(FVII:C)	0.534	[0.42-0.65] unit increase	Illumina [NR] (imputed)	N
1453	chr13	113795285	113795286	rs61753266	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs61753266-A	0.004	8E-15	(Coagulation factor Xa, F10.3077.66.2)	1.54	[1.15-1.93] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113800621	113800622	rs559054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	13q34	F10	rs559054-C	0.637751	3E-11		0.015869472	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113800621	113800622	rs559054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	13q34	F10	rs559054-C	0.637755	1E-9		0.014524658	[0.0099-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113800621	113800622	rs559054	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	F10	rs559054-C	0.624	6E-100	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1453	chr13	113800621	113800622	rs559054	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	F10	rs559054-C	0.624	2E-67	(Protein Z-dependent protease inhibitor, SERPINA10.13119.26.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
1453	chr13	113808273	113808274	rs12858483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	13q34	PROZ	rs12858483-G	0.203214	1E-9		0.017428644	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr13	113812961	113812962	rs2273971	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	13q34	PROZ	rs2273971-?	NR	4E-6				Illumina [NR]	N
1453	chr13	113813320	113813321	rs3024713	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs3024713-A	0.17	6E-19	(Coagulation Factor X, F10.4878.3.1)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113813320	113813321	rs3024713	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs3024713-A	0.17	1E-13	(Coagulation factor Xa, F10.3077.66.2)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113819008	113819009	rs494860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,339 Icelandic ancestry individuals	NA	13q34		rs494860-A	0.1898	4E-63		0.352307	[0.31-0.39] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113819008	113819009	rs494860	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K2	5,360 Icelandic ancestry individuals	NA	13q34		rs494860-A	0.1898	1E-57		0.359026	[0.32-0.4] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113819784	113819785	rs3024737	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	13q34	NR	rs3024737-G	NR	1E-6	(Hispanic)	11.26	[6.79-15.73] unit increase	Affymetrix [14000000] (imputed)	N
1453	chr13	113819947	113819948	rs3024739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q34		rs3024739-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1453	chr13	113829560	113829561	rs114687559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs114687559-C	0.01045	1E-8	(PON1)	0.1389	NR unit increase	Illumina [1671387] (imputed)	N
1453	chr13	113830328	113830329	rs34201467	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs34201467-C	0.184	8E-57	(Protein Z-dependent protease inhibitor, SERPINA10.13119.26.3)	0.51	[0.45-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113833931	113833932	rs116359265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs116359265-C	0.01045	5E-9	(UGT1A1)	0.1852	NR unit increase	Illumina [1671387] (imputed)	N
1453	chr13	113833931	113833932	rs116359265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs116359265-C	0.01045	5E-10	(PON1)	0.149	NR unit increase	Illumina [1671387] (imputed)	N
1453	chr13	113833931	113833932	rs116359265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	13q34	NR	rs116359265-C	0.01045	2E-8	(EPHX1)	4.479	NR unit increase	Illumina [1671387] (imputed)	N
1453	chr13	113836131	113836132	rs76648698	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	13q34	NR	rs76648698-?	NR	6E-11		6.554	NR z score increase	Illumina [at least 830937] (imputed)	N
1453	chr13	113838014	113838015	rs553316	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs553316-G	0.802	4E-58	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
1453	chr13	113839746	113839747	rs515863	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,364 Icelandic ancestry individuals	NA	13q34		rs515863-T	0.1528	8E-65		0.431559	[0.38-0.48] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113839746	113839747	rs515863	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	PROZ, PCID2, CUL4A	rs515863-T	0.1696787	3E-26	(Dual specificity mitogen-activated protein kinase kinase 2)	0.5917	[0.49-0.7] unit decrease	Affymetrix [509946]	N
1453	chr13	113845058	113845059	rs556990	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	PROZ, PCID2, CUL4A, RP11-98F14.11	rs556990-T	0.225677	2E-33	(EA, Dual specificity mitogen-activated protein kinase kinase 2)	0.5944	[0.5-0.69] unit decrease	Affymetrix [509946]	N
1453	chr13	113848134	113848135	rs7329583	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	13q34	NR	rs7329583-?		3E-6				Illumina [892589]	N
1453	chr13	113853034	113853035	rs61966459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	13q34	PCID2	rs61966459-G	0.3159	2E-10		0.02415953	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1453	chr13	113853034	113853035	rs61966459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	13q34	PCID2	rs61966459-G	0.3159	3E-14		0.02900448	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1453	chr13	113860120	113860121	rs9549357	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs9549357-A	0.195	4E-41	(Protein Z-dependent protease inhibitor, SERPINA10.13119.26.3)	0.41	[0.35-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113860300	113860301	rs35708060	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	13q34	NR	rs35708060-A	0.177	1E-83	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr13	113860899	113860900	rs9577481	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	13q34	PCID2, CUL4A	rs9577481-A	0.1686747	1E-13	(EA, Dual specificity mitogen-activated protein kinase kinase 2)	0.4212	[0.31-0.53] unit increase	Affymetrix [509946]	N
1453	chr13	113861384	113861385	rs4907598	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,364 Icelandic ancestry individuals	NA	13q34		rs4907598-C	0.1681	2E-43		0.34211	[0.29-0.39] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113869044	113869045	rs35306827	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	13q34	CUL4A	rs35306827-G	0.775	4E-9		1.06812	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1453	chr13	113872551	113872551	rs34265141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	CUL4A	rs34265141-CA	0.224113	3E-16		0.022489114	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113872551	113872551	rs34265141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	13q34	CUL4A	rs34265141-CA	0.223761	5E-14		0.020372652	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr13	113872711	113872712	rs35569628	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	13q34	CUL4A	rs35569628-T	0.777	1E-8		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	13q34		rs56129102-T	NR	3E-18		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	13q34		rs56129102-T	NR	3E-20		0.0218	[0.017-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	CUL4A	rs56129102-T	0.274295	2E-13		0.018266264	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q34	CUL4A	rs56129102-T	0.274308	4E-18		0.020418	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q34	CUL4A	rs56129102-T	0.274292	4E-21		0.023437757	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs56129102-T	0.243278	2E-24				Affymetrix, Illumina [20825802] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	13q34	NR	rs56129102-T	0.275187	1E-24		0.02233	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q34		rs56129102-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1453	chr13	113875079	113875080	rs56129102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q34		rs56129102-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1453	chr13	113877700	113877701	rs9549698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	CUL4A	rs9549698-G	0.25946	3E-13		0.019201133	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr13	113883314	113883315	rs1819204	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	13q34	F7, F10, PROZ, PCID2, CUL4A, LAMP1	rs1819204-A	0.731	1E-6		1.06823	[1.04-1.09]	NR [9372253] (imputed)	N
1453	chr13	113888720	113888721	rs56119221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,339 Icelandic ancestry individuals	NA	13q34		rs56119221-G	0.1563	3E-65		0.388044	[0.34-0.43] unit decrease	Illumina [7506463] (imputed)	N
1453	chr13	113891358	113891359	rs2287254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q34	CUL4A	rs2287254-G	0.406067	1E-13		0.016898261	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	113909338	113909339	rs2302757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q34	CUL4A	rs2302757-G	0.226163	6E-18		0.023212697	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	113911531	113911532	rs9549367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q34	CUL4A	rs9549367-G	0.2432	4E-10		0.02646397	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr13	113911650	113911651	rs12876365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K2	5,360 Icelandic ancestry individuals	NA	13q34		rs12876365-T	0.1538	3E-60		0.400267	[0.35-0.45] unit decrease	Illumina [7506463] (imputed)	N
1454	chr13	113911650	113911651	rs12876365	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	13q34	NR	rs12876365-?	NR	3E-10	(MP2K2)	0.2	[0.14-0.26] unit decrease	Illumina [4020654] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	13q34		rs9604045-T	NR	2E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	13q34		rs9604045-T	NR	9E-13		0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	13q34	NR	rs9604045-T	NR	4E-10		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	13q34	NR	rs9604045-T	NR	4E-15		0.0229	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q34	LDHBP1	rs9604045-T	0.252118	2E-11		0.017848544	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q34	LDHBP1	rs9604045-T	0.252124	1E-10		0.017157337	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	13q34	CUL4A	rs9604045-G	0.746424	2E-14		0.0175533	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	13q34	CUL4A	rs9604045-G	0.746466	6E-11		0.0154374	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1454	chr13	113927207	113927208	rs9604045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q34		rs9604045-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1454	chr13	113931853	113931854	rs74115822	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	13q34	CUL4A	rs74115822-A	0.03	1E-10		6.25	[3.58-10.9]	Affymetrix [508192]	N
1454	chr13	113931949	113931950	rs9603820	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	13q34	NR	rs9603820-?	NR	3E-6		2087.3103	NR unit increase	Illumina [2379855]	N
1454	chr13	113966988	113966989	rs146168866	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	13q34	Intergenic	rs146168866-A	NR	9E-8	(within families)	5.348	unit increase	Affymetrix [up to 15107142] (imputed)	N
1454	chr13	113979972	113979972	rs150462856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	13q34	NR	rs150462856-?	0.462659	2E-9		0.106558	[0.072-0.141] SD units decrease	Affymetrix, Illumina [36042313] (imputed)	N
1454	chr13	113980463	113980464	rs2302758	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	13q34	NR	rs2302758-A	0.954117	1E-8		0.0282873	[0.019-0.038] unit increase	NR [NR]	N
1454	chr13	113991822	113991823	rs9577511	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	13q34	NR	rs9577511-G	0.13	6E-7		1.2048193	[1.12-1.3]	NR [at least 8482392] (imputed)	N
1454	chr13	113991822	113991823	rs9577511	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	13q34	NR	rs9577511-G	0.13	6E-7		1.2048193	[1.12-1.3]	NR [at least 8482392] (imputed)	N
1454	chr13	114003458	114003459	rs79079163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	GRTP1	rs79079163-C	0.0508110000000001	2E-37		0.06968535	[0.059-0.08] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	114003458	114003459	rs79079163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	GRTP1	rs79079163-C	0.050825	9E-48		0.07911082	[0.068-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	114007721	114007722	rs9324233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34	GRTP1-AS1, GRTP1	rs9324233-T	0.9488634	2E-22		0.05203359	[0.042-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	114012508	114012509	rs117748422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q34	GRTP1, GRTP1-AS1	rs117748422-T	0.0487	5E-9		0.04948883	[0.033-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr13	114012897	114012898	rs7317038	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	13q34	GRTP1	rs7317038-C	NR	8E-12		0.006	[0.004-0.008] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1454	chr13	114015014	114015015	rs4907618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q34		rs4907618-A	0.466	1E-9				Affymetrix [10369434] (imputed)	N
1454	chr13	114015014	114015015	rs4907618	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	13q34		rs4907618-A	0.466	9E-25				Affymetrix [10369434] (imputed)	N
1454	chr13	114016011	114016012	rs80014372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	GRTP1-AS1	rs80014372-G	0.060194	1E-20		0.0467782	[0.037-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs4907622-C	0.487973	3E-50				Affymetrix, Illumina [24588908] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	13q34	NR	rs4907622-C	0.53518	2E-50		0.028803	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs4907622-G	0.468812	3E-133				Affymetrix, Illumina [17210439] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	13q34	NR	rs4907622-G	0.466202	9E-130		0.046864	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	13q34	GRTP1	rs4907622-C	0.5311	4E-45		0.05075002	[0.044-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	13q34	GRTP1	rs4907622-C	0.5314	8E-17		0.03043185	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1454	chr13	114016885	114016886	rs4907622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q34	GRTP1	rs4907622-C	0.531	2E-40		0.04834393	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr13	114018037	114018038	rs9549753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	13q34		rs9549753-A	NR	2E-42		0.0316	[0.027-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1454	chr13	114018037	114018038	rs9549753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	GRTP1	rs9549753-A	0.531955	2E-86		0.04819743	[0.043-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	114018037	114018038	rs9549753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	13q34	GRTP1	rs9549753-A	0.531943	4E-50		0.034763712	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr13	114018037	114018038	rs9549753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	13q34	GRTP1	rs9549753-A	0.531955	2E-78		0.045926712	[0.041-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr13	114019163	114019164	rs78290674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	GRTP1	rs78290674-C	0.061698	9E-14		0.03708858	[0.027-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1454	chr13	114021804	114021805	rs59255646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	13q34		rs59255646-A	0.587785	2E-8		0.0192839	[0.013-0.026] unit increase	Illumina [13478928] (imputed)	N
1454	chr13	114024867	114024868	rs57567837	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	13q34	intergenic	rs57567837-C	0.04	9E-12		0.06311158	[0.045-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
1455	chr13	114050361	114050362	rs73571445	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	13q34	GRTP1, LOC101928841	rs73571445-G	0.13	8E-17		8.33	NR z score increase	Illumina [at least 900015] (imputed)	N
1455	chr13	114066079	114066080	rs140613904	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ADPRHL1	rs140613904-?	NR	3E-8	(female)	0.432588	[NR] unit increase	Affymetrix [NR] (imputed)	N
1455	chr13	114078557	114078558	rs41306688	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	13q34	ADPRHL1	rs41306688-A	0.966963	4E-9		0.629527	[0.42-0.84] unit decrease	Affymetrix [8590397] (imputed)	N
1455	chr13	114078557	114078558	rs41306688	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	13q34	ADPRHL1	rs41306688-C	0.0467	4E-19		1.6546	[1.29-2.02] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1455	chr13	114134106	114134107	rs2265158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	13q34	DCUN1D2	rs2265158-G	0.288836	4E-23		0.02424324	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr13	114134106	114134107	rs2265158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q34	DCUN1D2	rs2265158-G	0.288772	5E-11		0.016086975	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1455	chr13	114135373	114135374	rs78649302	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	13q34		rs78649302-?	NR	3E-6	(lmp)	1.86		Illumina [11595112] (imputed)	N
1455	chr13	114136109	114136110	rs2262207	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	13q34	DCUN1D2	rs2262207-A	0.748194	1E-8		0.01746	[0.011-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1455	chr13	114160505	114160506	rs2997995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q34	TMCO3	rs2997995-T	0.294686	4E-13		0.017839903	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1455	chr13	114161253	114161254	rs76004204	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction (COJO adjusted)	120,590 European ancestry individuals	NA	13q34		rs76004204-?	NR	6E-9		2.17	[1.44-2.9] unit increase	Affymetrix [NR] (imputed)	N
1455	chr13	114161253	114161254	rs76004204	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety score x vitamin D PRS interaction	120,590 European ancestry individuals	NA	13q34		rs76004204-?	NR	9E-9		1.97	[1.3-2.64] unit increase	Affymetrix [NR] (imputed)	N
1455	chr13	114163626	114163627	rs111403728	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q34	TMCO3	rs111403728-A	0.892695	4E-8	(142 ms)	0.0479663	[0.03-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1455	chr13	114163626	114163627	rs111403728	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	13q34	TMCO3	rs111403728-A	0.892695	2E-8	(118 ms)	0.0506127	[0.032-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1456	chr13	114178221	114178222	rs2265146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs2265146-A	0.299899	5E-29				Affymetrix, Illumina [24649327] (imputed)	N
1456	chr13	114181495	114181496	rs2261003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs2261003-T	0.295409	1E-28				Affymetrix, Illumina [23114412] (imputed)	N
1456	chr13	114185565	114185566	rs2260850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	13q34	NR	rs2260850-G	0.280997	2E-29		0.023885	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1456	chr13	114185565	114185566	rs2260850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	13q34	NR	rs2260850-G	0.280458	4E-28		0.02432	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1456	chr13	114192535	114192536	rs2479755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	13q34		rs2479755-T	NR	1E-15		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1456	chr13	114192557	114192557	rs375794930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	13q34	TMCO3	rs375794930-GTGCGTGTGGTGTATA	0.221762	2E-11		0.018660512	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr13	114195160	114195161	rs2265155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q34		rs2265155-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1456	chr13	114197518	114197520	rs547500393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	13q34		rs547500393-C	NR	2E-17		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1456	chr13	114197518	114197520	rs547500393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q34	TMCO3	rs547500393-C	0.260977	3E-21		0.024117386	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1456	chr13	114197518	114197520	rs547500393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q34	TMCO3	rs547500393-C	0.261044	6E-9		0.015095787	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr13	114207112	114207113	rs182147357	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	13q34	TMCO3	rs182147357-A	NR	8E-9		0.454	[0.3-0.61] unit increase	NR [11024754] (imputed)	N
1456	chr13	114214124	114214125	rs9604153	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	13q34	TMC03, TFDP1	rs9604153-?	0.0	1E-9				Affymetrix [547296]	N
1456	chr13	114214124	114214125	rs9604153	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	13q34	TMCO3	rs9604153-?	NR	5E-8				Affymetrix [547296]	N
1456	chr13	114249806	114249807	rs2316121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q34	TFDP1	rs2316121-T	0.359453	6E-10		0.014438602	[0.0099-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr13	114249806	114249807	rs2316121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	13q34	TFDP1	rs2316121-T	0.359422	5E-13		0.0163264	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1456	chr13	114249806	114249807	rs2316121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	13q34		rs2316121-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1456	chr13	114289148	114289149	rs4150794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs4150794-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1457	chr13	114301337	114301338	rs75779304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	13q34		rs75779304-A	0.037721	2E-9		0.0329576	[0.022-0.044] unit increase	Illumina [13479295] (imputed)	N
1457	chr13	114301337	114301338	rs75779304	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q34	TFDP1, ATP4B	rs75779304-?	NR	1E-10		0.04985271	[0.035-0.065] unit increase	Illumina [27896057] (imputed)	N
1458	chr13	114460361	114460362	rs7326155	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	13q34	NR	rs7326155-C	NR	8E-6	(Hispanic)	9.78	[5.58-13.99] unit increase	Affymetrix [14000000] (imputed)	N
1458	chr13	114503989	114503990	rs3934939	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	FAM70B	rs3934939-A		8E-9		0.163	unit increase	Affymetrix [at least 2696785] (imputed)	N
1458	chr13	114504023	114504024	rs3934941	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	13q34	chr13mb114	rs3934941-G	0.462898738	4E-6		0.1434	[0.083-0.204] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1458	chr13	114507238	114507239	rs9329350	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	13q34	NR	rs9329350-G	0.941389270067114	8E-6	(IGP59)	0.3006	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
1458	chr13	114507838	114507839	rs77095672	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	13q34	NR	rs77095672-?	NR	9E-6		4.294	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1458	chr13	114507955	114507956	rs56032548	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	13q34	NR	rs56032548-?	NR	9E-6		4.294	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1458	chr13	114518788	114518789	rs9577874	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	13q34		rs9577874-G	0.637501	1E-8		0.0248147	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114524943	114524944	rs7400002	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q34	GAS6	rs7400002-A	0.769388	6E-9		0.0137859	[0.0091-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1458	chr13	114527837	114527838	rs7400722	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	13q34	GAS6	rs7400722-A	NR	9E-12		0.013994274	[0.01-0.018] unit increase	Illumina [242289]	N
1458	chr13	114527837	114527838	rs7400722	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	13q34	NR	rs7400722-A	0.4	7E-8		0.018	unit increase	Illumina [242289]	N
1458	chr13	114537620	114537621	rs78824256	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	13q34	GAS6, GAS6-AS1	rs78824256-T	0.0	1E-18				Illumina [239042]	N
1458	chr13	114541616	114541617	rs12868938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	13q34		rs12868938-G	NR	2E-13		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1458	chr13	114541616	114541617	rs12868938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	13q34	NR	rs12868938-G	0.370747	5E-19		0.019095	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1458	chr13	114542857	114542858	rs9604573	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	13q34	GAS6	rs9604573-T	0.2738	1E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	9E-10		0.0263975	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-12		0.0307279	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	6E-10		0.0268443	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-10		0.0275821	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	7E-11		0.0282941	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	1E-10		0.0281476	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	9E-11		0.0280994	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	8E-11		0.0282774	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	7E-11		0.0283276	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	3E-12		0.030901	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	13q34		rs7140110-T	0.700602	9E-9		0.0240182	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	13q34		rs7140110-T	0.700602	3E-8		0.0239699	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-11		0.0290931	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	1E-10		0.0280078	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-10		0.0275384	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs7140110-T	0.700602	4E-12		0.0308525	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	5E-12		0.0301484	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-11		0.0291479	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-11		0.0292314	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-10		0.0276407	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	6E-11		0.0284391	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	6E-11		0.0283421	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	2E-11		0.0293671	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	13q34		rs7140110-T	0.700635	1E-11		0.0294102	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	13q34		rs7140110-C	NR	3E-27		0.0245	[0.02-0.029] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	13q34		rs7140110-C	NR	3E-18		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	13q34		rs7140110-C	NR	2E-9		0.0323	[0.022-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	13q34		rs7140110-C	NR	1E-53		0.035	[0.03-0.04] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	13q34	GAS6	rs7140110-C	0.297495	2E-13		0.018076506	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q34	GAS6	rs7140110-T	0.701662	6E-38		0.0281089	[0.024-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	13q34	GAS6	rs7140110-?	NR	1E-23		0.0288	[0.024-0.034] unit increase	Affymetrix [5701386] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	13q34	GAS6	rs7140110-?	NR	2E-28		0.0311	[0.026-0.036] unit increase	Affymetrix [5701386] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	13q34	GAS6-AS1	rs7140110-C	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	13q34	GAS6-AS1	rs7140110-C	NR	1E-10				Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	13q34	GAS6-AS1	rs7140110-C	NR	4E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	13q34	GAS6-AS1	rs7140110-C	NR	3E-12				Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	13q34	GAS6-AS1	rs7140110-C	NR	9E-6		0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	13q34	GAS6-AS1	rs7140110-C	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	13q34	GAS6-AS1	rs7140110-C	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	13q34		rs7140110-?	NR	3E-33				NR [~ 8900000] (imputed)	N
1458	chr13	114544023	114544024	rs7140110	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	Triglycerides	41,142 European ancestry individuals, 705 East Asian ancestry individuals, 6,287 African American individuals, 1,415 Hispanic individuals	60,827 European ancestry individuals, 9,982 Indian Asian ancestry individuals, 2,710 African American/Afro-Caribbean individuals	13q34	GAS6	rs7140110-T	0.72	5E-7		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	2E-26		0.0286	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	1E-34		0.033	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	6E-31		0.0311	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	8E-13		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	8E-43		0.0378	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	2E-13		0.0197	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114545316	114545317	rs9577924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	13q34	NR	rs9577924-G	NR	2E-29		0.0303	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1458	chr13	114546548	114546549	rs6602912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	13q34	GAS6	rs6602912-G	0.28359	4E-13		0.018193724	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1458	chr13	114546548	114546549	rs6602912	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	13q34	GAS6	rs6602912-T	0.715148	6E-22		0.0222758	[0.018-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	2E-11		0.028165	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	3E-10		0.0262511	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	7E-11		0.0272009	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	1E-11		0.0285379	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	8E-11		0.0273556	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	2E-11		0.0283207	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	1E-11		0.0283928	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	1E-10		0.0270052	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	6E-13		0.0305287	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	2E-12		0.030055	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	3E-8		0.0238333	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	8E-10		0.0260018	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	4E-8		0.0230239	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	5E-12		0.0293366	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	6E-10		0.0262742	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	9E-9		0.0245499	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	1E-11		0.0282535	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	4E-10		0.0262676	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	2E-8		0.0231802	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	13q34		rs6602911-C	0.639926	9E-9		0.0242964	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	7E-10		0.0260458	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	6E-13		0.0304135	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	7E-13		0.0305822	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	13q34		rs6602911-C	0.639972	9E-9		0.0247729	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	13q34		rs6602911-T	NR	1E-23		0.0202	[0.016-0.024] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	13q34		rs6602911-T	NR	5E-11		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	13q34		rs6602911-T	NR	3E-20		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q34	GAS6	rs6602911-T	0.4294	1E-14		0.0216	[0.016-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1458	chr13	114547371	114547372	rs6602911	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	13q34	GAS6	rs6602911-T	0.4294	3E-8		0.0154	[0.0099-0.0209] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	1E-12		0.0312208	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-9		0.0264113	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	3E-9		0.0255798	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	1E-11		0.0293214	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	7E-13		0.0314729	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	6E-9		0.0255451	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	4E-12		0.0304456	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	5E-13		0.0313223	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	4E-10		0.0268767	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-11		0.0294062	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	1E-11		0.0297503	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	3E-13		0.0318366	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	7E-10		0.0271706	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	3E-12		0.0306824	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-10		0.0280671	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	3E-10		0.027814	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	6E-12		0.0297593	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	6E-12		0.0301248	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	1E-9		0.026777	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-12		0.0304436	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	9E-12		0.0300062	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	7E-12		0.0294703	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	7E-12		0.0301195	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-8		0.0247279	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	2E-9		0.0263949	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	6E-12		0.0295221	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	13q34		rs6602909-T	0.671058	6E-10		0.0272472	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	13q34		rs6602909-C	NR	2E-15		0.0138	[0.01-0.017] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	13q34	GAS6-AS1	rs6602909-T	0.672927	2E-10		0.00166666	[0.0012-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	13q34	GAS6	rs6602909-C	0.33	2E-10		6.33	z-score increase	Affymetrix [4311822] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	13q34	GAS6	rs6602909-C	0.33	7E-16		8.07	z-score increase	Affymetrix [4314223] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	GAS6	rs6602909-C	0.326464	3E-26		0.025224354	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	13q34	GAS6	rs6602909-C	0.326513	2E-24		0.024065861	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34	GAS6	rs6602909-C	0.32651	3E-12		0.01680318	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	13q34	GAS6	rs6602909-C	0.32652	9E-21		0.022102783	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	13q34	GAS6	rs6602909-C	0.326518	3E-18		0.020555224	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs6602909-T	0.663877	1E-34				Affymetrix, Illumina [22063850] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	13q34	NR	rs6602909-T	0.673312	2E-37		0.027202	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs6602909-C	0.328722	1E-24				Affymetrix, Illumina [24332387] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	13q34	NR	rs6602909-C	0.326971	2E-26		0.022197	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs6602909-C	0.3294	4E-21				Affymetrix, Illumina [24653286] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	13q34	NR	rs6602909-C	0.32743	9E-22		0.019932	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs6602909-C	0.329312	1E-17				Affymetrix, Illumina [24558453] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	13q34	NR	rs6602909-T	0.672976	3E-47		0.0296194	[0.026-0.034] unit decrease	Affymetrix [15000001]	N
1458	chr13	114551992	114551993	rs6602909	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	13q34	GAS6	rs6602909-T	0.672435	3E-22		0.0215663	[0.017-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	13q34		rs6602909-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	13q34	FLJ41484	rs6602909-C	NR	5E-10		0.0256522	[0.017-0.034] unit increase	Affymetrix [16832071] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	13q34	GAS6	rs6602909-C	0.3251	3E-17		0.03194904	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1458	chr13	114551992	114551993	rs6602909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	13q34	GAS6	rs6602909-C	0.3251	2E-10		0.02435825	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1458	chr13	114553133	114553134	rs7994900	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	13q34	GAS6	rs7994900-T	0.2691	7E-14		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1459	chr13	114565521	114565522	rs6602906	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	13q34	NR	rs6602906-A	0.3553	8E-12		0.0843	[0.06-0.108] unit increase	Illumina [~ 10600000] (imputed)	N
1459	chr13	114565713	114565714	rs6602904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	13q34		rs6602904-T	NR	2E-18		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1459	chr13	114622596	114622597	rs9604529	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	13q34	intergenic	rs9604529-?	0.19	7E-7	(CHAQ, RF-)	0.35	[NR] unit increase	Illumina [534053]	N
1459	chr13	114623820	114623821	rs41284486	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	13q34		rs41284486-G	0.888028	4E-8		0.0352759	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
1459	chr13	114623820	114623821	rs41284486	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	13q34		rs41284486-G	0.888028	5E-9		0.0371442	[0.025-0.05] unit decrease	NR [11722792] (imputed)	N
1459	chr13	114623820	114623821	rs41284486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	13q34	LINC00452	rs41284486-A	0.111595	7E-22		0.03459751	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chr13	114623820	114623821	rs41284486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q34		rs41284486-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1459	chr13	114625569	114625570	rs79192570	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	13q34	GAS6	rs79192570-G	0.855841	1E-18		0.0250946	[0.02-0.031] unit increase	Affymetrix [NR] (imputed)	N
1459	chr13	114631939	114631940	rs9604570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	13q34		rs9604570-A	0.813217	3E-9		0.0309059	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1459	chr13	114633329	114633330	rs73579370	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	13q34	LINC00565	rs73579370-C	0.2455	4E-10		0.02689215	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1459	chr13	114639119	114639120	rs73579354	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	13q34	NR	rs73579354-?		6E-6				Illumina [up to 6969139] (imputed)	N
1459	chr13	114639119	114639120	rs73579354	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	13q34	LINC00565	rs73579354-C	0.848942571	1E-6		0.206487	[0.12-0.29] unit decrease	Illumina [6969139] (imputed)	N
1460	chr13	114740053	114740054	rs28972181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q34		rs28972181-C	0.429011	1E-14		0.017485227	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr13	114740053	114740054	rs28972181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34		rs28972181-C	0.429009	4E-12		0.017567754	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1460	chr13	114741207	114741208	rs74406200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	13q34	NR	rs74406200-T	NR	1E-12		0.0219	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1460	chr13	114741207	114741208	rs74406200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	13q34	NR	rs74406200-T	NR	3E-36		0.0396	[0.034-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1460	chr13	114741207	114741208	rs74406200	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	13q34	RASA3	rs74406200-C	0.820888571	6E-6		0.172978	[0.098-0.248] unit decrease	Illumina [6969139] (imputed)	N
1460	chr13	114744545	114744546	rs75414584	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	13q34	RASA3	rs75414584-C	0.89963	5E-12				Affymetrix, Illumina [NR] (imputed)	N
1460	chr13	114749712	114749713	rs76140469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	13q34	RASA3	rs76140469-A	0.097046	1E-10		0.024683941	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1460	chr13	114753734	114753735	rs542675670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q34	RASA3	rs542675670-T	0.256795	8E-10		0.017422328	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1460	chr13	114756555	114756556	rs149014710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	13q34		rs149014710-C	0.569406	2E-8		0.0246389	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1460	chr13	114767039	114767040	rs116338429	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q34	NR	rs116338429-T	0.171091	2E-11		0.00759808	[0.0053-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
1460	chr13	114767039	114767040	rs116338429	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	13q34	NR	rs116338429-T	0.17075399999999996	2E-11		0.00960435	[0.0064-0.0128] unit increase	Affymetrix [16582621] (imputed)	N
1460	chr13	114767039	114767040	rs116338429	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q34	NR	rs116338429-T	0.171091	4E-9		0.00751242	[0.0049-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
1460	chr13	114767039	114767040	rs116338429	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	13q34	NR	rs116338429-T	0.17075399999999996	1E-9		0.00985678	[0.0065-0.0132] unit increase	Affymetrix [16582614] (imputed)	N
1460	chr13	114767454	114767455	rs142368394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	13q34		rs142368394-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1460	chr13	114768903	114768904	rs113183368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q34	RASA3	rs113183368-G	0.049069	2E-13		0.04127326	[0.03-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr13	114768903	114768904	rs113183368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34	RASA3	rs113183368-G	0.04906	3E-34		0.0700202	[0.059-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr13	114772070	114772071	rs552886585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34	RASA3	rs552886585-C	0.163853	9E-13		0.025557803	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1460	chr13	114804788	114804789	rs7983712	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	13q34		rs7983712-C	0.579	2E-11				Affymetrix [10369434] (imputed)	N
1460	chr13	114805120	114805121	rs7984414	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	13q34		rs7984414-C	0.579	1E-16				Affymetrix [10369434] (imputed)	N
1460	chr13	114807201	114807202	rs9562209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	13q34		rs9562209-T	NR	7E-9		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1460	chr13	114809100	114809101	rs67917624	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	13q34	NR	rs67917624-A	0.0273652	1E-6		1.162	[1.1-1.22]	Affymetrix [7791636] (imputed)	N
1460	chr13	114817260	114817261	rs6560957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	13q34		rs6560957-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1461	chr13	114824748	114824749	rs4883665	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	13q34		rs4883665-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1461	chr13	114833710	114833711	rs877426	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	13q34	NR	rs877426-T	0.2828	5E-7		0.1697	[0.1-0.24] unit decrease	Illumina [10677593] (imputed)	N
1461	chr13	114835801	114835802	rs7981577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q34	RASA3	rs7981577-C	0.437393	1E-17		0.019779377	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr13	114863841	114863842	rs1574170	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	13q34	NR	rs1574170-?	NR	2E-6		0.0187	[0.011-0.026] unit increase	Illumina [~ 7800000] (imputed)	N
1461	chr13	114867086	114867087	rs61971965	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	13q34	RASA3	rs61971965-?		3E-6				Illumina [4322238] (imputed)	N
1461	chr13	114882723	114882724	rs71437272	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-Epstein-Barr virus IgG seropositivity	8,735 White British ancestry individuals	NA	13q34	RASA3	rs71437272-C	0.980	2E-8		0.07	[0.046-0.094] unit increase	NR [25472218] (imputed)	N
1461	chr13	114900149	114900150	rs3812831	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	13q34	NR	rs3812831-C	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1461	chr13	114901187	114901188	rs2183246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	13q34	NR	rs2183246-T	0.68275	2E-11		0.01377	[0.0098-0.0178] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1461	chr13	114905630	114905630	rs34438197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	13q34		rs34438197-G	0.313641	3E-10		0.015076513	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr13	114913676	114913677	rs1536760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	13q34		rs1536760-T	NR	6E-27		0.0251	[0.021-0.03] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1461	chr13	114913676	114913677	rs1536760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs1536760-T	0.402967	5E-14				Affymetrix, Illumina [24649327] (imputed)	N
1461	chr13	114917126	114917127	rs9562128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	13q34		rs9562128-G	0.297196	9E-30		0.02911881	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr13	114918083	114918084	rs383599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	13q34		rs383599-G	NR	9E-9		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	13q34		rs9590390-G	0.706	1E-15				Affymetrix [10369434] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	13q34	NR	rs9590390-A	0.293689	2E-14		0.018641224	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	13q34		rs9590390-A	0.293726	8E-11		0.01594168	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	13q34		rs9590390-A	0.293701	2E-74		0.048282776	[0.043-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs9590390-A	0.293262	1E-45				Affymetrix, Illumina [23472807] (imputed)	N
1461	chr13	114920866	114920867	rs9590390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	13q34	NR	rs9590390-A	0.291922	3E-46		0.030122	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1461	chr13	114931768	114931769	rs3118896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	13q34	CDC16	rs3118896-?	NR	4E-6	(TAG 50:4)	0.15409005	[0.088-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1461	chr13	114936088	114936089	rs9590467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	13q34	NR	rs9590467-G	0.331546	1E-15				Affymetrix, Illumina [19872809] (imputed)	N
1461	chr13	114947509	114947510	rs547320937	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	13q34	intergenic	rs547320937-A	0.0064	3E-9		0.1614063	[0.11-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1462	chr13	114956772	114956773	rs12100034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	13q34	NR	rs12100034-A	0.359122	3E-16		0.017045	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1462	chr13	114960209	114960209	rs59430313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	13q34		rs59430313-CT	0.530848	3E-17		0.018814716	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1462	chr13	114961482	114961483	rs9590475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	13q34		rs9590475-A	0.412877	4E-14		0.017030237	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1462	chr13	114961482	114961483	rs9590475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	13q34		rs9590475-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1462	chr13	114996837	114996838	rs4883639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	13q34	CDC16	rs4883639-C	0.307798	3E-10		0.019030634	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr13	114998794	114998795	rs9590403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	13q34		rs9590403-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1462	chr13	114999058	114999059	rs9590404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	13q34		rs9590404-C	NR	2E-24		0.0155	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1462	chr13	114999635	114999636	rs10870597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	13q34		rs10870597-G	NR	6E-11		0.0377	[0.026-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1462	chr13	115000364	115000365	rs7321688	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	13q34	NR	rs7321688-C	0.766545	2E-9		0.00860832	[0.0057-0.0115] unit increase	Affymetrix [16585854] (imputed)	N
1462	chr13	115002304	115002305	rs8002514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	13q34		rs8002514-?	NR	3E-42				NR [~ 8900000] (imputed)	N
1462	chr13	115004043	115004044	rs9590406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	13q34		rs9590406-T	NR	2E-8		0.0169	[0.011-0.023] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1462	chr13	115008387	115008388	rs7994573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	13q34		rs7994573-C	NR	6E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1462	chr13	115008387	115008388	rs7994573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q34	CDC16	rs7994573-C	NR	3E-9		0.0198957	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1462	chr13	115015162	115015163	rs9314907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	CDC16	rs9314907-C		1E-10		0.292	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1462	chr13	115015162	115015163	rs9314907	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	13q34	CDC16	rs9314907-C		1E-7		0.16	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1462	chr13	115025397	115025398	rs11617448	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	CDC16	rs11617448-A	0.2889	6E-19		0.3324	[0.26-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
1462	chr13	115037012	115037013	rs7323748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	13q34		rs7323748-A	NR	2E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1462	chr13	115037376	115037377	rs17338417	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	13q34	CDC16	rs17338417-?		2E-6				Illumina [2668805]	N
1462	chr13	115039246	115039246	rs34154389	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	13q34	CDC16	rs34154389-CAA	0.2389	3E-14		0.0172	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1462	chr13	115047304	115047305	rs3752105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	13q34		rs3752105-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1462	chr13	115047463	115047464	rs112035922	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	13q34	NR	rs112035922-C	0.768404	2E-18		0.00832113	[0.0064-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
1462	chr13	115047463	115047464	rs112035922	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	13q34	NR	rs112035922-C	0.768404	1E-11		0.00728033	[0.0051-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
1462	chr13	115059728	115059729	rs112998813	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	13q34	UPF3A	rs112998813-C	0.07	5E-8		1.39	[1.23-1.56]	Illumina [> 10000000] (imputed)	N
1462	chr13	115059764	115059765	rs7320104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	13q34	UPF3A	rs7320104-G	NR	3E-9		0.0236922	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1462	chr13	115059764	115059765	rs7320104	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	13q34	UPF3A	rs7320104-G	0.7861	1E-9		0.2005	[0.14-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1462	chr13	115060767	115060768	rs11616710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	13q34		rs11616710-T	NR	1E-11		0.0268	[0.019-0.035] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1462	chr13	115060767	115060768	rs11616710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	13q34		rs11616710-T	NR	9E-11		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1462	chr13	115074877	115074878	rs7316983	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	13q34	UPF3A, CHAMP1	rs7316983-?	NR	1E-11		0.02503286	[0.018-0.032] unit decrease	Illumina [27896057] (imputed)	N
733	chr14	19462973	19462974	rs28701881	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	14q11.2	NR	rs28701881-C	0.988316	9E-6		0.366	[0.21-0.53] unit decrease	NR [9260588] (imputed)	N
733	chr14	19462973	19462974	rs28701881	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	14q11.2	NR	rs28701881-C	0.988316	4E-6		0.478	[0.28-0.68] unit increase	NR [9260588] (imputed)	N
740	chr14	20347303	20347304	rs1780933	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q11.2	NR	rs1780933-?	NR	4E-6				Affymetrix [NR]	N
741	chr14	20522720	20522721	rs4981053	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	14q11.2	OR4U1P	rs4981053-?	NR	1E-7				Affymetrix [905761]	N
742	chr14	20596802	20596803	rs4378533	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs4378533-?	NR	4E-9				Affymetrix [NR] (imputed)	N
742	chr14	20600398	20600399	rs11629020	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs11629020-?	NR	8E-9				Affymetrix [NR] (imputed)	N
742	chr14	20603181	20603182	rs11629197	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs11629197-?	NR	7E-9				Affymetrix [NR] (imputed)	N
742	chr14	20617202	20617203	rs114981764	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs114981764-?	NR	2E-8				Affymetrix [NR] (imputed)	N
742	chr14	20618248	20618249	rs80136827	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs80136827-?	NR	2E-8				Affymetrix [NR] (imputed)	N
742	chr14	20619720	20619721	rs115685888	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs115685888-?	NR	1E-8				Affymetrix [NR] (imputed)	N
742	chr14	20621715	20621716	rs148865018	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs148865018-?	NR	1E-8				Affymetrix [NR] (imputed)	N
742	chr14	20626623	20626624	rs144670330	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs144670330-?	NR	1E-8				Affymetrix [NR] (imputed)	N
742	chr14	20632397	20632398	rs75349257	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs75349257-?	NR	9E-9				Affymetrix [NR] (imputed)	N
742	chr14	20633540	20633541	rs6574204	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs6574204-?	NR	9E-9				Affymetrix [NR] (imputed)	N
742	chr14	20639209	20639210	rs8015787	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs8015787-?	NR	2E-8				Affymetrix [NR] (imputed)	N
742	chr14	20640401	20640402	rs75951132	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs75951132-?	NR	2E-8				Affymetrix [NR] (imputed)	N
742	chr14	20645189	20645190	rs114897734	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	14q11.2		rs114897734-A	0.985428	2E-6		0.0520277	[0.031-0.073] unit decrease	Illumina [13900000] (imputed)	N
742	chr14	20645453	20645454	rs182175739	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	14q11.2	NR	rs182175739-C		8E-6		0.2667	[0.15-0.38] SD units increase	NR [10700000] (imputed)	N
742	chr14	20649075	20649076	rs11624881	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q11.2		rs11624881-?	NR	1E-8				Affymetrix [NR] (imputed)	N
742	chr14	20656644	20656645	rs1188568	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q11.2	OR11H6	rs1188568-?	NR	8E-6	(asymmetric dimethylarginine)	0.17943536	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
743	chr14	20727466	20727467	rs145233920	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q11.2	Intergenic	rs145233920-?		2E-6		1.08	[1.05-1.11]	Illumina [7645193] (imputed)	N
743	chr14	20727466	20727467	rs145233920	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q11.2	Intergenic	rs145233920-?		1E-6		2.12	[1.57-2.87]	Illumina [7645193] (imputed)	N
743	chr14	20728062	20728063	rs1889809	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	14q11.2	TTC5	rs1889809-?		4E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
743	chr14	20824159	20824159	rs750147320	34626176	Malik R	2021-10-01	Brain	Whole-exome sequencing reveals a role of HTRA1 and EGFL8 in brain white matter hyperintensities.	White matter hyperintensity volume	17,830 individuals	NA	14q11.2		rs750147320-?	NR	3E-7		2.92	[1.8-4.04] unit decrease	NR [NR]	N
743	chr14	20836276	20836277	rs149049108	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q11.2	Intergenic	rs149049108-?		4E-6		1.09	[1.05-1.13]	Illumina [7645193] (imputed)	N
743	chr14	20836276	20836277	rs149049108	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q11.2	Intergenic	rs149049108-?		4E-6		2.22	[1.58-3.11]	Illumina [7645193] (imputed)	N
744	chr14	20854733	20854734	rs945011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q11.2	NR	rs945011-A	0.01045	2E-8	(AOC3)	0.02161	NR unit increase	Illumina [1671387] (imputed)	N
744	chr14	20854733	20854734	rs945011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q11.2	NR	rs945011-A	0.01045	2E-11	(HNRNPH3)	0.09719	NR unit increase	Illumina [1671387] (imputed)	N
744	chr14	20854733	20854734	rs945011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q11.2	NR	rs945011-A	0.01045	1E-8	(VTN)	0.09044	NR unit increase	Illumina [1671387] (imputed)	N
744	chr14	20871644	20871645	rs8009925	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	White matter microstructure in first episode schizophrenia (left anterior cingulate cortex)	93 Han Chinese cases, 134 Han Chinese controls	NA	14q11.2	TEP1	rs8009925-?	NR	7E-8		0.04	unit increase	Illumina [6055918] (imputed)	N
744	chr14	20896244	20896245	rs1713450	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	14q11.2	KLHL33	rs1713450-C	0.13	7E-9		1.55	[1.34-1.80]	Illumina [5878075] (imputed)	N
744	chr14	20907437	20907438	rs8003054	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	14q11.2	NR	rs8003054-G	0.3589	3E-6		0.1612	[0.1-0.22] unit increase	Illumina [10677593] (imputed)	N
744	chr14	20933614	20933615	rs1713460	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	14q11.2	APEX1, PARP2, PNP	rs1713460-G	0.3	2E-10		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
744	chr14	20938250	20938251	rs1760940	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	14q11.2	NR	rs1760940-C	0.180112	5E-27		0.0263	[0.022-0.031] unit increase	Affymetrix [23037915] (imputed)	N
744	chr14	20938250	20938251	rs1760940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q11.2		rs1760940-C	NR	2E-14		0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
744	chr14	20938250	20938251	rs1760940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q11.2		rs1760940-C	NR	2E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
744	chr14	20938250	20938251	rs1760940	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q11.2	PNP	rs1760940-?	NR	1E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix [21347608] (imputed)	N
744	chr14	20938250	20938251	rs1760940	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q11.2	PNP	rs1760940-?	NR	3E-8		0.0022	[0.0012-0.0032] unit increase	Affymetrix [21347608] (imputed)	N
744	chr14	20938250	20938251	rs1760940	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q11.2	PNP	rs1760940-C	0.25	1E-11		6.81	z-score increase	Affymetrix [4314223] (imputed)	N
744	chr14	20938250	20938251	rs1760940	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q11.2	PNP	rs1760940-C	0.25	2E-8		5.6	z-score increase	Affymetrix [4312306] (imputed)	N
744	chr14	20938250	20938251	rs1760940	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Guanosine levels	291 European ancestry individuals	NA	14q11.2		rs1760940-A	0.7637	6E-16		0.0768	unit decrease	Illumina [7049691] (imputed)	N
744	chr14	20938250	20938251	rs1760940	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	14q11.2	NR	rs1760940-C	0.2455	4E-21		0.0281134	[0.022-0.034] unit increase	Affymetrix [3505788] (imputed)	N
744	chr14	20938250	20938251	rs1760940	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q11.2	PNP	rs1760940-A	0.752978	4E-8		0.012146	[0.0078-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
744	chr14	20938250	20938251	rs1760940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	14q11.2		rs1760940-?	NR	1E-15				NR [~ 8900000] (imputed)	N
744	chr14	20939588	20939589	rs12147688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q11.2		rs12147688-T	NR	4E-16		0.0215	[0.016-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
744	chr14	20940605	20940606	rs1049564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNP	5,361 Icelandic ancestry individuals	NA	14q11.2		rs1049564-A	0.1674	7E-21		0.232748	[0.18-0.28] unit decrease	Illumina [7506463] (imputed)	N
744	chr14	20940605	20940606	rs1049564	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q11.2	NR	rs1049564-A	0.1829	1E-9	(PNP)	0.03394	NR unit decrease	Illumina [1671387] (imputed)	N
744	chr14	20940605	20940606	rs1049564	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	14q11.2	PNP, TMEM55B, GAFA1	rs1049564-T	NR	1E-7	(EA)	2.08	[1.34-3.21]	Illumina [291943]	N
744	chr14	20955694	20955695	rs1760928	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNP	5,361 Icelandic ancestry individuals	NA	14q11.2		rs1760928-G	0.2341	5E-47		0.310936	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
744	chr14	20955694	20955695	rs1760928	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	PNP	rs1760928-A	0.77625	1E-29	(PNP, 10039_32_3)	0.32745907	[0.27-0.38] unit increase	Illumina [> 1000000] (imputed)	N
744	chr14	20957432	20957433	rs12147450	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	14q11.2	intergenic	rs12147450-?	NR	6E-7	(BARS)			Affymetrix [492000]	N
744	chr14	20958055	20958056	rs4981211	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	14q11.2	PNP	rs4981211-?	0.572083	2E-6		1.3267844	[1.18-1.49]	Affymetrix, Illumina [NR] (imputed)	N
745	chr14	20994897	20994898	rs141830649	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	14q11.2		rs141830649-?	NR	8E-8		2.19941		NR [NR] (imputed)	N
745	chr14	21005061	21005062	rs1243704	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	14q11.2	RNASE9, RNASE10	rs1243704-?		7E-7	(IFN gamma response)			Illumina [NR]	N
745	chr14	21034835	21034836	rs61995582	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	14q11.2		rs61995582-?	NR	4E-6		0.18	unit decrease	Illumina [NR] (imputed)	N
745	chr14	21049558	21049559	rs1243607	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Milk allergy (parent-of-origin effect)	230 European ancestry trios, 10 European ancestry father-child pairs, 25 European ancestry mother-child pairs, 10 European ancestry affected child	NA	14q11.2	RNASE11, RNASE9	rs1243607-?	NR	5E-6				Illumina [NR]	N
745	chr14	21049558	21049559	rs1243607	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	14q11.2	RNASE9, RNASE11	rs1243607-?	NR	1E-6				Illumina [NR]	N
746	chr14	21128049	21128050	rs11624221	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q11.2	Intergenic	rs11624221-C	0.328987	9E-14	(EA, Angiogenin)	0.3347	[0.25-0.42] unit decrease	Affymetrix [509946]	N
746	chr14	21145054	21145055	rs11629118	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Angiogenin plasma levels	400 French ancestry individuals	NA	14q11.2		rs11629118-T	NR	1E-12		0.158	[0.11-0.2] ng/mL increase	Illumina [5201092] (imputed)	N
746	chr14	21145054	21145055	rs11629118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANG	5,365 Icelandic ancestry individuals	NA	14q11.2		rs11629118-C	0.2203	3E-177		0.593466	[0.55-0.63] unit increase	Illumina [7506463] (imputed)	N
746	chr14	21145075	21145076	rs28535078	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	ANG	rs28535078-G	0.80046875	9E-111	(ANG, 4874_3_1)	0.6753785	[0.62-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
746	chr14	21146583	21146584	rs12588573	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE4	5,362 Icelandic ancestry individuals	NA	14q11.2		rs12588573-T	0.2189	1E-33		0.261955	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
746	chr14	21146583	21146584	rs12588573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	RNASE4	rs12588573-T	0.224	9E-54	(Ribonuclease 4, RNASE4.5644.60.3)	0.45	[0.39-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
746	chr14	21150895	21150896	rs58132820	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANG	5,365 Icelandic ancestry individuals	NA	14q11.2		rs58132820-C	0.05384	4E-58		0.646733	[0.57-0.73] unit increase	Illumina [7506463] (imputed)	N
746	chr14	21151160	21151161	rs34121942	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	14q11.2	NR	rs34121942-?	NR	1E-17	(Angiogenin)			Illumina [~ 4000000] (imputed)	N
746	chr14	21155269	21155270	rs17114671	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q11.2	RNASE4, ANG, RP11-903H12.5, RP11-903H12.3, Y_RNA	rs17114671-C	0.1188566	2E-38	(Angiogenin)	0.8064	[0.69-0.92] unit increase	Affymetrix [509946]	N
746	chr14	21158909	21158910	rs17114699	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q11.2	RP11-903H12.3, RP11-903H12.5, RNASE4, ANG	rs17114699-T	0.1045226	7E-30	(EA, Angiogenin)	0.7532	[0.63-0.88] unit increase	Affymetrix [509946]	N
746	chr14	21159063	21159064	rs184297073	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	NR	rs184297073-T	0.006	1E-36	(Ribonuclease 4, RNASE4.5644.60.3)	2.11	[1.78-2.44] unit decrease	Affymetrix [10572788] (imputed)	N
746	chr14	21159265	21159266	rs36071889	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANG	5,365 Icelandic ancestry individuals	NA	14q11.2		rs36071889-T	0.2297	2E-86		0.427213	[0.38-0.47] unit decrease	Illumina [7506463] (imputed)	N
746	chr14	21162052	21162053	rs11701	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANG	5,365 Icelandic ancestry individuals	NA	14q11.2		rs11701-G	0.1542	3E-31		0.297737	[0.25-0.35] unit increase	Illumina [7506463] (imputed)	N
746	chr14	21162052	21162053	rs11701	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	14q11.2		rs11701-T	NR	2E-6		0.75	[0.66-0.84]	Illumina [7105229] (imputed)	N
746	chr14	21164244	21164245	rs1888560	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	RNASE4	rs1888560-C	0.6834375	1E-18	(RNASE4, 5644_60_3)	0.22301994	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
746	chr14	21164244	21164245	rs1888560	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q11.2	RP11-903H12.5, RNASE4, ANG, RP11-903H12.3	rs1888560-T	0.3214644	7E-15	(Angiogenin)	0.3446	[0.26-0.43] unit decrease	Affymetrix [509946]	N
746	chr14	21164535	21164536	rs1888562	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	NR	rs1888562-T	0.486	2E-29	(Ribonuclease 4, RNASE4.5644.60.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
746	chr14	21166282	21166283	rs17211649	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	14q11.2	RNASE4	rs17211649-?	NR	2E-6		14.22	unit increase (EA, Dutch cohort)	Illumina [610255]	N
746	chr14	21178386	21178387	rs7151941	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE6	5,368 Icelandic ancestry individuals	NA	14q11.2		rs7151941-C	0.4432	2E-17		0.156147	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
746	chr14	21179012	21179013	rs8003813	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	NR	rs8003813-C	0.526	1E-21	(Ribonuclease K6, RNASE6.5646.20.3)	0.24	[0.2-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
746	chr14	21207774	21207775	rs80073712	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	14q11.2	NR	rs80073712-?		7E-7	(PCB206)	0.76	[0.47-1.05] unit decrease	Illumina [8736858] (imputed)	N
746	chr14	21231660	21231661	rs10131142	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Aseptic loosening in total joint arthroplasty	97 cases, 289 controls	NA	14q11.2	LOC107984671	rs10131142-A	0.09	4E-7		6.47	[NR]	Illumina [up to 600000]	N
747	chr14	21246938	21246939	rs2319516	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	RNASE6	rs2319516-G	0.73703125	4E-164	(RNASE6, 5646_20_3)	0.6836817	[0.64-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
747	chr14	21250123	21250124	rs1045922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE6	5,368 Icelandic ancestry individuals	NA	14q11.2		rs1045922-A	0.2585	2E-306		0.688663	[0.65-0.72] unit increase	Illumina [7506463] (imputed)	N
747	chr14	21250845	21250846	rs11622942	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	RNASE6	rs11622942-T	0.233	6E-391	(Ribonuclease K6, RNASE6.5646.20.3)	1.0	[0.96-1.04] unit increase	Affymetrix [10572788] (imputed)	N
747	chr14	21261732	21261733	rs10131141	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	RNASE1	rs10131141-G	0.28	8E-8	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
747	chr14	21280677	21280678	rs17254387	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE1	5,366 Icelandic ancestry individuals	NA	14q11.2		rs17254387-G	0.2719	2E-35		0.24364	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
747	chr14	21280677	21280678	rs17254387	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	RNASE1	rs17254387-A	0.688	3E-17	(Ribonuclease pancreatic, RNASE1.7211.2.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
747	chr14	21280747	21280748	rs12885981	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	RNASE1	rs12885981-C	0.75078125	3E-25	(RNASE1, 7211_2_3)	0.27274823	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
747	chr14	21287222	21287223	rs56216219	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE1	5,366 Icelandic ancestry individuals	NA	14q11.2		rs56216219-G	0.03819	9E-19		0.404246	[0.31-0.49] unit decrease	Illumina [7506463] (imputed)	N
747	chr14	21287222	21287223	rs56216219	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	NR	rs56216219-G	0.038	4E-14	(Ribonuclease pancreatic, RNASE1.7211.2.3)	0.51	[0.37-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
747	chr14	21301281	21301282	rs12878080	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	14q11.2	NR	rs12878080-?	NR	8E-19		8.86	NR z score increase	Illumina [at least 830937] (imputed)	N
747	chr14	21359807	21359808	rs2233859	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE2	5,366 Icelandic ancestry individuals	NA	14q11.2		rs2233859-A	0.4609	1E-35		0.236127	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
748	chr14	21365800	21365801	rs8007643	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	14q11.2	intergenic	rs8007643-T	0.06667	3E-8	(Nasal ala length)	1.064	[0.70-1.43] unit increase	Illumina [34985077] (imputed)	N
748	chr14	21385990	21385991	rs147307766	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Eosinophil cationic protein levels	21,758 European ancestry individuals	9,173 individuals	14q11.2		rs147307766-T	0.041	6E-80		0.5345	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
748	chr14	21412050	21412051	rs55633173	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE3	5,367 Icelandic ancestry individuals	NA	14q11.2		rs55633173-C	0.05057	2E-22		0.421321	[0.34-0.51] unit increase	Illumina [7506463] (imputed)	N
748	chr14	21416422	21416423	rs2783800	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNASE3	5,367 Icelandic ancestry individuals	NA	14q11.2		rs2783800-C	0.2759	4E-20		0.195539	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
748	chr14	21430473	21430474	rs2771316	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	RNASE3	rs2771316-C	0.7228125	1E-14	(RNASE3, 5741_55_3)	0.21437995	[0.16-0.27] unit increase	Illumina [> 1000000] (imputed)	N
748	chr14	21431412	21431413	rs12897672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q11.2		rs12897672-?	NR	7E-9				NR [~ 8900000] (imputed)	N
748	chr14	21433366	21433367	rs56204594	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q11.2	RNASE2	rs56204594-C	0.464	3E-22	(Non-secretory ribonuclease, RNASE2.8394.56.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
748	chr14	21435051	21435052	rs7142386	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	RNASE2	rs7142386-A	0.5465625	2E-26	(RNASE2, 8394_56_3)	0.26401895	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
748	chr14	21449069	21449070	rs12589870	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q11.2	METTL17	rs12589870-T	NR	7E-6		0.18714094	[0.11-0.27] unit increase	Illumina [> 6200000] (imputed)	N
748	chr14	21492228	21492229	rs1998848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q11.2		rs1998848-G	0.989468	2E-15		0.166954	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
748	chr14	21492228	21492229	rs1998848	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	14q11.2	NDRG2	rs1998848-A	0.05	5E-10	(Histidine)	0.15	[0.11-0.19] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
748	chr14	21492373	21492374	rs147773754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	14q11.2		rs147773754-C	0.995832	3E-23		0.327152	[0.26-0.39] unit increase	NR [11722792] (imputed)	N
748	chr14	21492373	21492374	rs147773754	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q11.2		rs147773754-C	0.995843	1E-15		0.264975	[0.2-0.33] unit increase	NR [11722792] (imputed)	N
749	chr14	21497588	21497589	rs190897369	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	14q11.2	NDRG2, TPPP2	rs190897369-A	0.0086	9E-6		0.2442	[0.14-0.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
749	chr14	21505627	21505628	rs1261795	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q11.2	NR	rs1261795-G	0.316	9E-7	(Females)	0.246812	[0.15-0.34] unit increase	Illumina [~ 6600000] (imputed)	N
749	chr14	21516446	21516447	rs1958393	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	14q11.2		rs1958393-C	0.890981	4E-21		0.0631483	[0.05-0.076] unit decrease	NR [11722792] (imputed)	N
749	chr14	21531832	21531833	rs6571631	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Pediatric nonalcoholic steatohepatitis	46 Hispanic boy definite NASH cases, 110 Hispanic boy borderline NASH controls	NA	14q11.2	ARHGEF40	rs6571631-?	NR	7E-6				Illumina [up to 624297]	N
749	chr14	21532311	21532312	rs12881221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q11.2		rs12881221-C	0.84381	9E-12		0.0391032	[0.028-0.05] unit decrease	NR [11722792] (imputed)	N
749	chr14	21538066	21538067	rs8019890	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q11.2	ARHGEF40	rs8019890-A	0.5313	2E-38		0.025	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
749	chr14	21538066	21538067	rs8019890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs8019890-?	NR	2E-39				NR [~ 8900000] (imputed)	N
749	chr14	21539683	21539684	rs4982404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q11.2		rs4982404-T	NR	1E-24		0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q11.2		rs12889267-G	0.13	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q11.2		rs12889267-G	0.13	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q11.2		rs12889267-G	NR	5E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q11.2		rs12889267-G	NR	6E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q11.2		rs12889267-G	NR	2E-12		0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
749	chr14	21542765	21542766	rs12889267	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.1715	3E-9				NR [9056863] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.167658	9E-11		0.019141689	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.167556	2E-12		0.02116286	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.167693	6E-15		0.023106309	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.167659	3E-18		0.025793018	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.135291	2E-16				Affymetrix, Illumina [24332387] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.136013	1E-20				Affymetrix, Illumina [24653286] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.166485	2E-22		0.024321	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.13695	2E-23				Affymetrix, Illumina [24558453] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q11.2	NR	rs12889267-G	0.166459	2E-25		0.026042	[0.021-0.031] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.1662	3E-8		0.5196	[0.34-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
749	chr14	21542765	21542766	rs12889267	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q11.2	ARHGEF40	rs12889267-G		2E-14		0.022	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
749	chr14	21542765	21542766	rs12889267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q11.2		rs12889267-?	NR	2E-17				NR [~ 8900000] (imputed)	N
749	chr14	21542765	21542766	rs12889267	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q11.2	NR	rs12889267-?	NR	3E-7	(male)	0.23926	[0.15-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
749	chr14	21542765	21542766	rs12889267	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q11.2	NR	rs12889267-?	NR	2E-11		0.19695	[0.14-0.25] unit decrease	Affymetrix [7794483] (imputed)	N
749	chr14	21542765	21542766	rs12889267	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	14q11.2	NDRG2	rs12889267-A	0.8324	2E-6		0.388302	[0.23-0.55] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
749	chr14	21542765	21542766	rs12889267	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	14q11.2	ARHGEF40	rs12889267-G	0.1675	3E-9		0.02800671	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
749	chr14	21542765	21542766	rs12889267	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q11.2	NDRG2, ARHGEF40, ZNF219	rs12889267-G	0.16	4E-20		0.4164	[0.33-0.51] unit increase	Affymetrix [19941912] (imputed)	N
749	chr14	21545229	21545230	rs12885183	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q11.2	ARHGEF40	rs12885183-G	0.22	9E-10		0.49	[0.33-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
749	chr14	21550211	21550212	rs114591848	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	14q11.2	ARHGEF40	rs114591848-?		5E-16		7.0	[4.2-11.6]	Illumina [NR] (imputed)	N
749	chr14	21555062	21555063	rs7342537	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q11.2	NR	rs7342537-G	0.017932999999999977	6E-13		0.0357478	[0.026-0.045] unit increase	Affymetrix [16578495] (imputed)	N
749	chr14	21555062	21555063	rs7342537	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q11.2	NR	rs7342537-G	0.018067000000000055	3E-24		0.106873	[0.086-0.128] unit increase	Affymetrix [16580851] (imputed)	N
749	chr14	21565148	21565149	rs2319626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q11.2	NR	rs2319626-C	0.171356	6E-18		0.021223	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
749	chr14	21588264	21588265	rs115080167	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q11.2	NR	rs115080167-?	NR	7E-6		0.051225	[0.029-0.074] unit increase	Affymetrix [805426] (imputed)	N
749	chr14	21608985	21608986	rs8022689	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	14q11.2	NR	rs8022689-A	0.35	9E-6		1.14	1.07-1.20	NR [at least 8807005] (imputed)	N
749	chr14	21623647	21623648	rs7161544	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q11.2	ZNF219	rs7161544-?	NR	7E-6	(glycerol-3-phosphate)	0.17614548	[0.099-0.253] unit decrease	Affymetrix [at least 2500000] (imputed)	N
750	chr14	21673368	21673369	rs72673100	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q11.2	OR5AU1, LINC00641, HNRNPC	rs72673100-C	0.544	6E-6		1.0574961		NR [9372253] (imputed)	N
750	chr14	21721550	21721551	rs111571004	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q11.2	NR	rs111571004-T	0.9678012	7E-6		1.0638298	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
750	chr14	21725653	21725654	rs17197037	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	14q11.2	HNRNPC	rs17197037-A	NR	2E-6		1.17	[NR]	Affymetrix [703019]	N
750	chr14	21741940	21741941	rs8008748	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q11.2	NR	rs8008748-C	0.795225	9E-9		0.014881	[0.0098-0.02] unit increase	NR [NR]	N
750	chr14	21741940	21741941	rs8008748	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q11.2	HNRNPC, RPGRIP1	rs8008748-?	NR	2E-12		0.027604304	[0.02-0.035] unit increase	Illumina [27896057] (imputed)	N
750	chr14	21754185	21754186	rs150685865	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	14q11.2	NR	rs150685865-C	0.01	6E-6	(EA)	1.82	[1.40-2.36]	Affymetrix [7469170] (imputed)	N
751	chr14	21779494	21779495	rs4981370	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q11.2	RPGRIP1	rs4981370-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
751	chr14	21812333	21812334	rs6571769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	RPGRIP1, SUPT16H	rs6571769-G	0.675849	5E-8	(-108 ms)	0.0338676	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
751	chr14	21824282	21824283	rs8004294	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q11.2	Intergenic	rs8004294-A	0.9098	1E-9	(MTAG)	0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
751	chr14	21824282	21824283	rs8004294	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q11.2		rs8004294-A	0.9079	8E-12	(conditional-joint)	0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
751	chr14	21864123	21864124	rs10134108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q11.2		rs10134108-A	NR	3E-9		0.0228	[0.015-0.03] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
751	chr14	21871998	21871999	rs8011945	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q11.2	NR	rs8011945-G	0.9093	9E-11		0.002638	[0.0019-0.0034] unit increase	Affymetrix [NR] (imputed)	N
752	chr14	21892164	21892165	rs7148741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q11.2	CHD8	rs7148741-G	NR	4E-11		0.0236852	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
752	chr14	21921224	21921225	rs28663442	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q11.2	CHD8	rs28663442-T	0.1761	1E-19		0.0227	[0.018-0.028] unit increase	Affymetrix [18391927] (imputed)	N
752	chr14	21921224	21921225	rs28663442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs28663442-?	NR	3E-35				NR [~ 8900000] (imputed)	N
752	chr14	21924224	21924225	rs78484822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	14q11.2		rs78484822-A	0.061473	4E-10		0.0366775	[0.025-0.048] unit increase	Illumina [13479924] (imputed)	N
752	chr14	21924224	21924225	rs78484822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q11.2		rs78484822-A	0.061586	5E-23		0.0430155	[0.034-0.052] unit increase	Illumina [13479295] (imputed)	N
752	chr14	21924224	21924225	rs78484822	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q11.2	CHD8, RAB2B	rs78484822-?	NR	1E-26		0.065595776	[0.054-0.078] unit increase	Illumina [27896057] (imputed)	N
752	chr14	21930931	21930932	rs10145520	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q11.2	NR	rs10145520-T	0.804	4E-8		0.00748696	[0.0048-0.0102] unit increase	NR [9732723] (imputed)	N
752	chr14	21930931	21930932	rs10145520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q11.2		rs10145520-T	0.8031	5E-12		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
752	chr14	21930931	21930932	rs10145520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q11.2	Intergenic	rs10145520-T	0.8031	1E-13	(MTAG)	0.0122	[0.0091-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
752	chr14	21967108	21967109	rs1061026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q11.2		rs1061026-G	NR	5E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
752	chr14	21982956	21982957	rs1263806	25628645	Tong Y	2015-01-13	Front Genet	Identification of genetic variants or genes that are associated with Homoharringtonine (HHT) response through a genome-wide association study in human lymphoblastoid cell lines (LCLs).	Response to Homoharringtonine (cytotoxicity)	93 African American ancestry lymphoblastoid cell lines, 91 European ancestry lymphoblastoid cell lines, 94 Han Chinese ancestry lymphoblastoid cell lines	NA	14q11.2	SALL2, METTL3	rs1263806-?		9E-7				Affymetrix, Illumina [6750581] (imputed)	N
752	chr14	21999902	21999903	rs755721182	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SALL2	rs755721182-?	NR	1E-11		4.22349	[NR] unit increase	Affymetrix [NR] (imputed)	N
752	chr14	22002460	22002461	rs8016621	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	14q11.2	SALL2	rs8016621-?	NR	6E-6	(Male)	3.9682539		Illumina [848325]	N
752	chr14	22015046	22015047	rs113065532	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	14q11.2	NR	rs113065532-C		6E-6		0.5695	[0.32-0.82] SD units decrease	NR [10700000] (imputed)	N
753	chr14	22038124	22038125	rs34162196	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	14q11.2	SALL2, OR10G3	rs34162196-?	NR	5E-19		0.0358507	[0.028-0.044] unit increase	Affymetrix [25921788] (imputed)	N
753	chr14	22051518	22051519	rs17182599	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	14q11.2	intergenic	rs17182599-?	NR	3E-6				Illumina [501584]	N
753	chr14	22057504	22057505	rs61971809	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	14q11.2	Intergenic	rs61971809-C		6E-8		0.16	[NR] unit decrease	Illumina [24111857] (imputed)	N
753	chr14	22084331	22084332	rs4405470	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	14q11.2	NR	rs4405470-T	0.357	8E-6	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
753	chr14	22125952	22125953	rs10133132	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	14q11.2	NR	rs10133132-?	NR	7E-6		1.268	[1.16-1.37]	Illumina [NR] (imputed)	N
754	chr14	22166092	22166093	rs189825457	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	14q11.2		rs189825457-T	0.0105	3E-6		2.802	[1.817-4.321]	Affymetrix [7975321] (imputed)	N
754	chr14	22196540	22196541	rs10132760	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	14q11.2	NR	rs10132760-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
754	chr14	22235889	22235890	rs718433	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	14q11.2	TRAJ17	rs718433-G	0.39	8E-6		0.59	[0.32-0.86] mmHg decrease	Illumina [466573]	N
755	chr14	22372303	22372304	rs8015861	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q11.2	NR	rs8015861-?	NR	5E-18		0.046	[0.036-0.056] unit increase	Illumina [7760689] (imputed)	N
756	chr14	22460286	22460287	rs79501380	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q11.2	NR	rs79501380-A	0.0162	5E-8		0.2733	[0.18-0.37] unit increase	Illumina [~ 10600000] (imputed)	N
756	chr14	22478960	22478961	rs11846015	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	14q11.2	NR	rs11846015-?	NR	3E-6		0.8028945	[0.73-0.88]	Affymetrix, Illumina [~ 10400000] (imputed)	N
756	chr14	22481823	22481824	rs3811321	23432519	O'Brien RP	2013-02-21	Clin Transplant	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		14q11.2	TRAV19, TRAV20	rs3811321-C	NR	8E-8	(Five-year creatinine)	0.481	[NR] unit increase	Illumina [511662]	N
757	chr14	22549885	22549886	rs11157393	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	14q11.2	NR	rs11157393-T	0.5932	9E-6		0.1465	[0.082-0.211] unit increase	Illumina [NR] (imputed)	N
757	chr14	22575972	22575973	rs73586669	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep activity levels	90,515 individuals	NA	14q11.2	OR4E1	rs73586669-T	NR	2E-8		0.401	[0.26-0.54] unit decrease	NR [11024754] (imputed)	N
757	chr14	22607501	22607502	rs1474476	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	TRAV8-7	rs1474476-A	0.108	5E-6	(Urinary free dopamine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
757	chr14	22636873	22636874	rs11157436	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q11.2	NR	rs11157436-?	NR	4E-71				Affymetrix [NR]	N
757	chr14	22636873	22636874	rs11157436	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	14q11.2	TRA-alpha	rs11157436-T	NR	2E-7		0.155	unit increase	Affymetrix [NR]	N
758	chr14	22715157	22715158	rs3811273	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	14q11.2	TRA	rs3811273-?	NR	2E-9		1.22	[0.83-1.61] unit increase	Affymetrix [2135235] (imputed)	N
758	chr14	22738941	22738942	rs11847963	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	14q11.2	LOC101929755	rs11847963-T	0.082	4E-6		0.1879	[0.11-0.27] unit increase	Illumina [up to 38043574] (imputed)	N
758	chr14	22755574	22755575	rs4981419	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	14q11.2	NR	rs4981419-?		4E-6				Illumina [up to 6969139] (imputed)	N
758	chr14	22755574	22755575	rs4981419	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	14q11.2	TRAV38-2DV8	rs4981419-G	0.832275	6E-7		0.376497	[0.23-0.52] unit increase	Illumina [6952813] (imputed)	N
758	chr14	22769924	22769925	rs7161270	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q11.2	ABHD4	rs7161270-?	NR	2E-6	(LPC 14:0)	0.3155248	[0.19-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
758	chr14	22782314	22782315	rs184336780	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	14q11.2		rs184336780-A	0.0017851	4E-6		0.36794	[0.21-0.52] unit decrease	Affymetrix [15580782] (imputed)	N
758	chr14	22782376	22782377	rs11845134	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q11.2	TRAV40	rs11845134-A	0.181	6E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
758	chr14	22801078	22801079	rs10136383	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q11.2	NR	rs10136383-?	NR	4E-12				Affymetrix [NR]	N
759	chr14	22864267	22864268	rs8017559	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	14q11.2	MMP14, SLC7A7, LRP10, REM2, MRPL52, RBM23	rs8017559-?	0.36822	5E-6		2.478749	NR	Illumina [5009928] (imputed)	N
760	chr14	22937655	22937656	rs12589282	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	14q11.2	TRA	rs12589282-G	0.437	4E-6	(Recessive model)	1.48	[1.25-1.752]	Illumina [733202]	N
760	chr14	22943704	22943705	rs77000164	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	14q11.2	NR	rs77000164-?	NR	1E-6		0.096	[0.057-0.135] unit decrease	Illumina [at least 560000] (imputed)	N
760	chr14	22956709	22956710	rs227869	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	14q11.2	DAD1	rs227869-?	0.32	4E-6		0.25	[0.14-0.36] unit decrease	Illumina [2095209]	N
760	chr14	23002683	23002684	rs1154155	25986216	Toyoda H	2015-05-15	Brain Behav Immun	A polymorphism in CCR1/CCR3 is associated with narcolepsy.	Narcolepsy with cataplexy	409 Japanese ancestry cases, 1,562 Japanese ancestry controls	240 Japanese ancestry cases, 869 Japanese ancestry controls	14q11.2	TCRA	rs1154155-C	0.431	1E-11		1.71	[NR]	Affymetrix [525196]	N
760	chr14	23002683	23002684	rs1154155	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	14q11.2	TRA	rs1154155-G	0.148	5E-49		1.64	[1.53-1.75]	Affymetrix [603382]	N
760	chr14	23002683	23002684	rs1154155	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	14q11.2	TCRA	rs1154155-G	0.148	9E-30		1.72	[1.54-1.91]	Illumina [111240]	N
760	chr14	23002683	23002684	rs1154155	20711174	Hor H	2010-08-15	Nat Genet	Genome-wide association study identifies new HLA class II haplotypes strongly protective against narcolepsy.	Narcolepsy	562 European ancestry cases, 702 European ancestry controls	370 cases, 495 controls	14q11.2	TRA@	rs1154155-G	0.15	5E-7		1.54	[1.30-1.95]	Affymetrix [392949]	N
760	chr14	23002683	23002684	rs1154155	19412176	Hallmayer J	2009-05-03	Nat Genet	Narcolepsy is strongly associated with the T-cell receptor alpha locus.	Narcolepsy	807 European ancestry cases, 1,074 European ancestry controls	363 European ancestry cases, 355 European ancestry  controls, 133 African American cases, 144 African American controls, 561 Asian ancestry cases, 605 Asian ancestry controls	14q11.2	TRA-alpha, TRAJ10	rs1154155-C	0.14	3E-22		1.69	[1.52-1.88]	Affymetrix [549596]	N
760	chr14	23039135	23039136	rs5742831	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	14q11.2	NR	rs5742831-A	0.411713	5E-6				Illumina [5378266] (imputed)	N
761	chr14	23092104	23092105	rs7145202	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	14q11.2	ABHD4, DAD1	rs7145202-T	0.62	4E-6		0.1	[0.057-0.143] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
762	chr14	23241503	23241504	rs11157810	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	14q11.2	OXA1L, SLC7A7	rs11157810-C	0.33	6E-17		8.37	NR z score decrease	Illumina [at least 900015] (imputed)	N
762	chr14	23244137	23244138	rs12436256	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q11.2	OXA1L	rs12436256-?	NR	6E-7	(kynurenic acid)	0.28728163	[0.17-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
762	chr14	23249538	23249539	rs12433985	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	14q11.2		rs12433985-G	NR	4E-6		1.38		Illumina [7574753] (imputed)	N
762	chr14	23262388	23262389	rs35718984	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based) in high deployment stress exposure	581 European ancestry cases and controls	NA	14q11.2	SLC7A7	rs35718984-A	0.1578	8E-7		2.4576		Illumina [at least 664457] (imputed)	N
762	chr14	23279172	23279173	rs11157836	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		14q11.2	SLC7A7	rs11157836-A	0.178	5E-6		0.484	[0.28-0.69] unit decrease	Illumina [640625] (imputed)	N
762	chr14	23284903	23284904	rs28364570	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	14q11.2	SLC7A7	rs28364570-A	0.902	1E-6	(Stability score)	1.0487	[0.63-1.47] unit decrease	Affymetrix [8042262] (imputed)	N
762	chr14	23288934	23288935	rs17122772	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q11.2	SLC7A7	rs17122772-G	0.228	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
762	chr14	23288952	23288953	rs17122776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q11.2	NR	rs17122776-G	NR	4E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
762	chr14	23305648	23305649	rs1004030	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q11.2	NR	rs1004030-T	NR	1E-8		1.039	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
762	chr14	23305648	23305649	rs1004030	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q11.2	MMP14	rs1004030-T	0.5751	2E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix [18391927] (imputed)	N
762	chr14	23305648	23305649	rs1004030	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	14q11.2	MMP14	rs1004030-T	0.58	2E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
762	chr14	23312593	23312594	rs1042704	34111113	Green HD	2021-06-10	PLoS Genet	A genome-wide association study identifies 5 loci associated with frozen shoulder and implicates diabetes as a causal risk factor.	Frozen shoulder	627,998 European ancestry individuals	NA	14q11.2	NR	rs1042704-A	0.215	1E-12		1.12	[1.15-1.08]	NR [16689279] (imputed)	N
762	chr14	23312593	23312594	rs1042704	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	14q11.2	MMP14	rs1042704-A	0.2017	3E-8		0.0206	[0.013-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
762	chr14	23312593	23312594	rs1042704	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	14q11.2	MMP14	rs1042704-A	0.2067	1E-7		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
762	chr14	23312593	23312594	rs1042704	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q11.2	MMP14	rs1042704-G	0.7852	1E-34		0.027732	[0.023-0.032] unit increase	NR [13737936] (imputed)	N
762	chr14	23312593	23312594	rs1042704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q11.2		rs1042704-?	NR	2E-34				NR [~ 8900000] (imputed)	N
762	chr14	23312593	23312594	rs1042704	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q11.2		rs1042704-?	NR	6E-30		0.0289553	[0.024-0.034] unit increase	Affymetrix [20259828] (imputed)	N
762	chr14	23312593	23312594	rs1042704	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	14q11.2	MMP14	rs1042704-A	0.248	2E-19		1.259	[1.198-1.324]	Illumina [238825]	N
762	chr14	23312593	23312594	rs1042704	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q11.2	MMP14	rs1042704-G	0.785886	6E-7	(women)	0.0286749	[0.018-0.04] unit increase	NR [17166351] (imputed)	N
762	chr14	23312593	23312594	rs1042704	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q11.2	MMP14	rs1042704-G	0.785054	9E-14		0.0325322	[0.024-0.041] unit increase	NR [17166351] (imputed)	N
762	chr14	23312593	23312594	rs1042704	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q11.2	MMP14	rs1042704-G	0.784101	4E-7	(men)	0.0353041	[0.023-0.047] unit increase	NR [17166351] (imputed)	N
762	chr14	23313632	23313633	rs17880989	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	14q11.2		rs17880989-A	0.0264	3E-8		0.36452645	[0.23-0.5] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
762	chr14	23313632	23313633	rs17880989	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q11.2		rs17880989-A	0.027	2E-14		0.32343766	[0.24-0.41] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
762	chr14	23313632	23313633	rs17880989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs17880989-?	NR	5E-15				NR [~ 8900000] (imputed)	N
762	chr14	23313632	23313633	rs17880989	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q11.2	MMP14	rs17880989-A	0.0256	6E-13		0.3648	[0.27-0.46] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
763	chr14	23346278	23346279	rs142153001	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	14q11.2		rs142153001-?	NR	1E-11		0.0568272	[0.04-0.074] unit increase	NR [9800000] (imputed)	N
763	chr14	23349952	23349953	rs35956093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q11.2	LRP10	rs35956093-G	0.320287	3E-9		0.014252801	[0.0095-0.019] unit increase	Affymetrix [93095623] (imputed)	N
763	chr14	23368184	23368185	rs1570342	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	14q11.2	RBM23, PRMT5, HAUS4, C14orf93, SAMD4A	rs1570342-?		6E-6	(corrected for APOE4 status)	0.1	[NR] unit increase	Illumina [5137218] (imputed)	N
763	chr14	23372912	23372913	rs12437151	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q11.2	RBM23	rs12437151-G	0.43	2E-16		0.0071	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
763	chr14	23376677	23376678	rs8005677	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	14q11.2	RBM23	rs8005677-?	NR	9E-9		5.747	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
763	chr14	23381412	23381413	rs4981446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q11.2	Intergenic	rs4981446-A	0.3882	2E-20	(MTAG)	0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr14	23381979	23381980	rs9989230	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q11.2	RBM23	rs9989230-?	NR	4E-12		0.014386957	[0.01-0.018] unit increase	NR [7306098]	N
763	chr14	23382639	23382640	rs10137343	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q11.2	Intergenic	rs10137343-A	0.4692	1E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr14	23382639	23382640	rs10137343	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q11.2	Intergenic	rs10137343-A	0.469	1E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr14	23384721	23384722	rs398024546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q11.2		rs398024546-C	NR	1E-9		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
763	chr14	23386411	23386412	rs561256539	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BRPF1	5,349 Icelandic ancestry individuals	NA	14q11.2		rs561256539-C	0.01609	1E-15		0.123774	[0.093-0.154] unit increase	Illumina [7506463] (imputed)	N
763	chr14	23387584	23387585	rs34344888	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	14q11.2		rs34344888-A	0.3974	3E-9		45.858845	z score increase	NR [6814003]	N
763	chr14	23387584	23387585	rs34344888	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	14q11.2	NR	rs34344888-A	0.3926	9E-13		0.016260339	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
763	chr14	23387608	23387609	rs55898715	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q11.2		rs55898715-T	0.39	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
763	chr14	23388230	23388231	rs11557895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q11.2		rs11557895-?	NR	3E-9				NR [~ 8900000] (imputed)	N
763	chr14	23391085	23391086	rs4982708	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q11.2	PRMT5	rs4982708-G	0.43	1E-13		0.00644	[0.0047-0.0081] unit increase	Affymetrix [at least 8002429] (imputed)	N
763	chr14	23403170	23403171	rs11157930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q11.2	Intergenic	rs11157930-T	0.3924	6E-24	(MTAG)	0.0135	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr14	23403170	23403171	rs11157930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q11.2	Intergenic	rs11157930-T	0.3944	3E-11	(MTAG)	0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
763	chr14	23403192	23403193	rs11157931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q11.2		rs11157931-A	0.3924	4E-22		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
763	chr14	23403727	23403728	rs4982712	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q11.2	RP11-298I3.1	rs4982712-G	0.387	3E-13		0.01505347	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
763	chr14	23403727	23403728	rs4982712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q11.2		rs4982712-?	NR	9E-10				NR [~ 8900000] (imputed)	N
763	chr14	23405219	23405220	rs8006875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q11.2		rs8006875-?	NR	2E-15				NR [~ 8900000] (imputed)	N
763	chr14	23408836	23408837	rs55894132	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q11.2	RP11-298I3.1	rs55894132-C	NR	5E-10		0.027741179	[0.019-0.036] unit decrease	Affymetrix [NR]	N
763	chr14	23409908	23409909	rs35085068	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	14q11.2	LOC101926933	rs35085068-?	NR	4E-9		0.036399	NR unit decrease	Affymetrix [464137]	N
763	chr14	23429712	23429713	rs1951120	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	14q11.2	RBM23, PRMT5, HAUS4, C14orf93, SAMD4A	rs1951120-?		4E-7	(corrected for APOE4 status)	0.14	[NR] unit decrease	Illumina [5137218] (imputed)	N
763	chr14	23429728	23429729	rs1951121	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	14q11.2	HAUS4	rs1951121-T	0.6011	5E-6		0.0117	[0.0066-0.0168] unit increase	Affymetrix [19819130] (imputed)	N
763	chr14	23429728	23429729	rs1951121	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q11.2	HAUS4	rs1951121-T	0.6011	8E-15		0.0189	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
763	chr14	23429728	23429729	rs1951121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q11.2		rs1951121-?	NR	2E-10				NR [~ 8900000] (imputed)	N
763	chr14	23435332	23435333	rs6572878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	RP11-298I3.5	rs6572878-C	0.397908	3E-11		0.015220485	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr14	23435332	23435333	rs6572878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q11.2	RP11-298I3.5	rs6572878-C	0.397924	5E-11		0.015014864	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
763	chr14	23439554	23439555	rs34664079	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q11.2	Intergenic	rs34664079-T	0.6053	1E-12	(MTAG)	0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
763	chr14	23450143	23450144	rs8009811	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q11.2		rs8009811-T	0.4	9E-10		6.12	z score increase	Affymetrix [9061022] (imputed)	N
763	chr14	23451344	23451345	rs45543740	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q11.2	AJUBA	rs45543740-A	NR	2E-8		0.61596847	[0.41-0.82] unit decrease	Illumina [> 6200000] (imputed)	N
763	chr14	23452127	23452128	rs3811183	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q11.2	AJUBA	rs3811183-?	NR	7E-10		0.4197	[0.28-0.56] unit increase	Affymetrix [11100000] (imputed)	N
763	chr14	23453796	23453797	rs117489404	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q11.2	AJUBA	rs117489404-A	0.0113826793199133	3E-7	(G_Ruminococcus_HB)	1.98668	[1.23-2.74] unit decrease	Illumina [7711310] (imputed)	N
763	chr14	23458456	23458457	rs11629120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q11.2		rs11629120-?	NR	2E-8				NR [~ 8900000] (imputed)	N
764	chr14	23464481	23464482	rs997154	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		14q11.2	AJUBA, C14orf93	rs997154-G	NR	7E-6		0.138	[0.077-0.199] unit increase	Illumina [2446724] (imputed)	N
764	chr14	23464481	23464482	rs997154	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		14q11.2	AJUBA, C14orf93	rs997154-G	NR	3E-8		0.15	[0.097-0.203] unit increase	Illumina [2446724] (imputed)	N
764	chr14	23491283	23491284	rs11846575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q11.2	PSMB5	rs11846575-G	0.280074	3E-11		0.01655318	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23493455	23493456	rs11339398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q11.2	PSMB5	rs11339398-A	0.275311	2E-72		0.045329105	[0.04-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23493455	23493456	rs11339398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q11.2	PSMB5	rs11339398-A	0.275346	2E-70		0.04449096	[0.04-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q11.2		rs8013143-G	NR	2E-28		0.0281	[0.023-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
764	chr14	23494276	23494277	rs8013143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q11.2		rs8013143-G	NR	1E-15		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
764	chr14	23494276	23494277	rs8013143	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	14q11.2		rs8013143-G	NR	6E-15		0.1	[0.08-0.12] unit increase	Illumina [76131582]	N
764	chr14	23494276	23494277	rs8013143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q11.2	PSMB5	rs8013143-G	0.279775	2E-84		0.04863154	[0.044-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q11.2	PSMB5	rs8013143-G	0.279867	3E-243		0.091999404	[0.087-0.097] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q11.2	PSMB5	rs8013143-G	0.279936	2E-38		0.0334574	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q11.2	PSMB5	rs8013143-G	0.279935	2E-45		0.03479351	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q11.2	PSMB5	rs8013143-G	0.279802	1E-76		0.046072017	[0.041-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs8013143-A	0.706678	1E-354				Affymetrix, Illumina [22063850] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs8013143-G	0.24951	1E-53				Affymetrix, Illumina [24246363] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q11.2	NR	rs8013143-G	0.281754	2E-55		0.031737	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	14q11.2	NR	rs8013143-G	0.28088	2E-15		0.017727	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs8013143-G	0.245101	4E-60				Affymetrix, Illumina [20825802] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q11.2	NR	rs8013143-G	0.28078	6E-61		0.035375	[0.031-0.04] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	14q11.2		rs8013143-?	0.2907	2E-6		0.1114	[0.066-0.157] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	14q11.2		rs8013143-?	0.3802	1E-26		0.0923	[0.075-0.109] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	14q11.2		rs8013143-?	0.3042	3E-16		0.0961	[0.073-0.119] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q11.2		rs8013143-?	NR	1E-283				NR [~ 8900000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q11.2		rs8013143-?	NR	1E-45				NR [~ 8900000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q11.2	PSMB5	rs8013143-G	NR	2E-85		0.0836895	[0.075-0.092] unit increase	Affymetrix [16832071] (imputed)	N
764	chr14	23494276	23494277	rs8013143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	14q11.2	PSMB5	rs8013143-G	0.2794	4E-39		0.05232083	[0.044-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	14q11.2	PSMB5	rs8013143-G	0.2794	4E-34		0.04867016	[0.041-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23494276	23494277	rs8013143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q11.2	PSMB5	rs8013143-G	0.2794	2E-96		0.08212154	[0.074-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23495047	23495048	rs941718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q11.2		rs941718-C	NR	1E-31		0.0298	[0.025-0.035] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
764	chr14	23495047	23495048	rs941718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q11.2	PSMB5	rs941718-C	0.279737	3E-12		0.0173424	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23495047	23495048	rs941718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q11.2	NR	rs941718-T	0.718672	1E-350		0.083899	[0.08-0.088] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
764	chr14	23495047	23495048	rs941718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs941718-C	0.243818	1E-14				Affymetrix, Illumina [21126107] (imputed)	N
764	chr14	23497355	23497355	rs113107529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q11.2	PSMB5	rs113107529-AAAAC	0.2798	3E-15		0.03104257	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23497628	23497629	rs7147308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q11.2	PSMB5	rs7147308-T	0.279603	2E-22		0.024444204	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23499320	23499321	rs113525195	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q11.2	PSMB5	rs113525195-A	0.2767	1E-15		0.03166069	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23499320	23499321	rs113525195	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	14q11.2	PSMB5	rs113525195-A	0.2766	3E-26		0.04259004	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23499320	23499321	rs113525195	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	14q11.2	PSMB5	rs113525195-A	0.2767	1E-23		0.04020318	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23504020	23504021	rs11543947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q11.2	PSMB5	rs11543947-A	0.076078	1E-14		0.037115093	[0.028-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23511578	23511579	rs34457782	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q11.2		rs34457782-A	0.0372	3E-8		0.2501	[0.16-0.34] unit decrease	Illumina [18357815] (imputed)	N
764	chr14	23514234	23514235	rs60432013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q11.2	CDH24, PSMB11	rs60432013-T	0.1683	2E-20		0.04434039	[0.035-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23515374	23515375	rs11845708	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q11.2	PSMB11	rs11845708-T	NR	2E-8		0.0300641	[0.019-0.041] unit increase	Affymetrix [16832071] (imputed)	N
764	chr14	23516091	23516092	rs1078451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q11.2	CDH24, PSMB11	rs1078451-A	0.168483	3E-23		0.03088139	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23529773	23529774	rs187176132	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q11.2		rs187176132-G	0.0078211	5E-7		0.1943	[0.12-0.27] unit decrease	Affymetrix [15580782] (imputed)	N
764	chr14	23551364	23551365	rs11851603	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q11.2	NR	rs11851603-?	NR	2E-11				Affymetrix [NR]	N
764	chr14	23568493	23568494	rs9972278	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q11.2	NR	rs9972278-?	NR	5E-6				Affymetrix [NR]	N
764	chr14	23577197	23577198	rs9743723	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (basophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	14q11.2	CEBPE	rs9743723-C	0.474	6E-6		0.086	[0.049-0.123] unit decrease	Illumina [27887661] (imputed)	N
764	chr14	23577197	23577198	rs9743723	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	14q11.2	intergenic	rs9743723-T	0.7198	4E-39		0.05143034	[0.044-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23582400	23582401	rs12892722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs12892722-A	0.506439	5E-9		0.020021033	[0.013-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23585332	23585333	rs4982731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	14q11.2	CEBPE	rs4982731-T	0.7343	2E-41		0.05353112	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23585332	23585333	rs4982731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	14q11.2	CEBPE	rs4982731-T	0.7342	1E-38		0.05210084	[0.044-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23585332	23585333	rs4982731	23512250	Xu H	2013-03-19	J Natl Cancer Inst	Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.	Acute lymphoblastic leukemia (childhood)	972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls	574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls	14q11.2	CEBPE	rs4982731-C	0.28	9E-12		1.36	[1.24-1.48]	Affymetrix [709059]	N
764	chr14	23586017	23586018	rs8015478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	14q11.2		rs8015478-C	NR	4E-20		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
764	chr14	23586017	23586018	rs8015478	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	14q11.2	NR	rs8015478-?	NR	3E-14		0.06509	[0.048-0.082] unit decrease novel	Illumina [6108953] (imputed)	N
764	chr14	23587045	23587046	rs147453535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs147453535-C	0.00883699999999998	3E-40		0.16639988	[0.14-0.19] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587045	23587046	rs147453535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q11.2	CEBPE	rs147453535-C	0.00883699999999998	4E-39		0.16392736	[0.14-0.19] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587045	23587046	rs147453535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs147453535-C	0.00882700000000003	2E-16		0.10397712	[0.079-0.129] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587045	23587046	rs147453535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q11.2	CEBPE	rs147453535-C	0.00882799999999995	3E-14		0.0959792	[0.071-0.121] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587045	23587046	rs147453535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q11.2	CEBPE	rs147453535-C	0.0095	1E-11		0.129889	[0.092-0.168] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23587045	23587046	rs147453535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	14q11.2	CEBPE	rs147453535-C	0.0095	7E-12		0.1322001	[0.094-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23587045	23587046	rs147453535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	14q11.2	CEBPE	rs147453535-C	0.0095	8E-9		0.1106741	[0.073-0.148] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23587230	23587231	rs2144827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs2144827-A	0.182472	2E-24		0.034254562	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23587230	23587231	rs2144827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q11.2	CEBPE	rs2144827-A	0.182476	4E-16		0.026763327	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23587554	23587555	rs1474920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	14q11.2		rs1474920-T	0.285226	2E-33		0.0604477	[0.051-0.07] unit increase	Illumina [13469940] (imputed)	N
764	chr14	23587554	23587555	rs1474920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs1474920-T	0.198875	5E-13		0.021128653	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587554	23587555	rs1474920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q11.2	CEBPE	rs1474920-T	0.198898	2E-12		0.020666536	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587554	23587555	rs1474920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	14q11.2	NR	rs1474920-G	0.708561	1E-29		0.062568	[0.052-0.073] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
764	chr14	23587554	23587555	rs1474920	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	14q11.2	CEBPE	rs1474920-?	NR	6E-21		0.05917	[0.047-0.072] unit increase novel	Illumina [6108953] (imputed)	N
764	chr14	23587837	23587838	rs141903485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	14q11.2		rs141903485-?	NR	3E-8		0.0606836	[0.038-0.084] unit decrease	NR [9800000] (imputed)	N
764	chr14	23587837	23587838	rs141903485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	14q11.2		rs141903485-?	NR	2E-13		0.0838623	[0.061-0.106] unit increase	NR [9800000] (imputed)	N
764	chr14	23587837	23587838	rs141903485	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	14q11.2		rs141903485-?	NR	6E-18		0.0922664	[0.069-0.115] unit decrease	NR [9800000] (imputed)	N
764	chr14	23587837	23587838	rs141903485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs141903485-T	0.00713600000000003	3E-18		0.12936352	[0.1-0.16] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23587837	23587838	rs141903485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs141903485-T	0.00713299999999995	9E-16		0.118989944	[0.09-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23587837	23587838	rs141903485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q11.2	CEBPE	rs141903485-T	0.00713200000000003	2E-20		0.13733086	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23587837	23587838	rs141903485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	14q11.2	CEBPE	rs141903485-T	0.0087	1E-12		0.1501399	[0.11-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23588319	23588320	rs78537674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs78537674-T	0.021296	1E-10		0.051549867	[0.036-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23588730	23588731	rs2239635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs2239635-C	0.721812	2E-69				Affymetrix, Illumina [19905671] (imputed)	N
764	chr14	23588730	23588731	rs2239635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q11.2	NR	rs2239635-C	0.70425	2E-52		0.034388	[0.03-0.039] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
764	chr14	23589056	23589057	rs2239633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q11.2		rs2239633-A	NR	2E-40		0.0217	[0.019-0.025] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
764	chr14	23589056	23589057	rs2239633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs2239633-A	0.483877	2E-29		0.039200835	[0.032-0.046] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589056	23589057	rs2239633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q11.2	CEBPE	rs2239633-A	0.483859	1E-30		0.028615545	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589056	23589057	rs2239633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs2239633-A	0.473412	3E-66				Affymetrix, Illumina [19872809] (imputed)	N
764	chr14	23589056	23589057	rs2239633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q11.2	NR	rs2239633-A	0.483519	2E-68		0.034771	[0.031-0.039] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
764	chr14	23589056	23589057	rs2239633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q11.2		rs2239633-?	NR	4E-54				NR [~ 8900000] (imputed)	N
764	chr14	23589056	23589057	rs2239633	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	14q11.2	CEBPE	rs2239633-?	NR	5E-14		1.369863	[1.28-1.45]	Illumina [6755715] (imputed)	N
764	chr14	23589056	23589057	rs2239633	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	14q11.2	CEBPE	rs2239633-T	NR	7E-13		1.2658228	[NR]	Affymetrix [757935]	N
764	chr14	23589056	23589057	rs2239633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	14q11.2	CEBPE	rs2239633-A	0.4845	4E-29		0.03982814	[0.033-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589056	23589057	rs2239633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	14q11.2	CEBPE	rs2239633-A	0.4845	3E-31		0.04152842	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589056	23589057	rs2239633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q11.2	CEBPE	rs2239633-A	0.4844	1E-32		0.04239293	[0.035-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589056	23589057	rs2239633	23996088	Migliorini G	2013-08-30	Blood	Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype.	Acute lymphoblastic leukemia (B-cell precursor)	1,658 European ancestry child cases, 4,723 European ancestry controls	1,449 European ancestry child cases, 1,488 European ancestry controls	14q11.2	CEBPE	rs2239633-?	NR	1E-16				Illumina [382776] (imputed)	N
764	chr14	23589056	23589057	rs2239633	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	14q11.2	CEBPE	rs2239633-C	0.5	4E-10		1.3513513	[1.22-1.47]	Affymetrix [355750]	N
764	chr14	23589056	23589057	rs2239633	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	14q11.2	CEBPE	rs2239633-C	0.5	2E-8	(ETV6-RUNX1 positive)	1.3333333	[1.2-1.49]	Affymetrix [355750]	N
764	chr14	23589056	23589057	rs2239633	19684604	Papaemmanuil E	2009-08-16	Nat Genet	Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	907 European ancestry cases, 2,398 European ancestry controls	NA	14q11.2	CEBPE	rs2239633-G	0.52	3E-7		1.34	[1.22-1.45]	Illumina [291473]	N
764	chr14	23589348	23589349	rs2239630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	14q11.2		rs2239630-G	0.488963	1E-17		0.0383565	[0.03-0.047] unit increase	Illumina [13471440] (imputed)	N
764	chr14	23589348	23589349	rs2239630	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q11.2		rs2239630-G	NR	6E-87		0.0409	[0.037-0.045] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
764	chr14	23589348	23589349	rs2239630	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	14q11.2		rs2239630-A	0.441	1E-34				Affymetrix [10369434] (imputed)	N
764	chr14	23589348	23589349	rs2239630	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	14q11.2		rs2239630-A	0.441	2E-36				Affymetrix [10369434] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs2239630-G	0.558309	2E-21		0.021232089	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs2239630-G	0.558341	2E-107		0.04968078	[0.045-0.054] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q11.2	CEBPE	rs2239630-A	0.441673	2E-95		0.046481524	[0.042-0.051] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q11.2	CEBPE	rs2239630-G	0.558277	3E-39		0.030186955	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q11.2	CEBPE	rs2239630-G	0.558274	6E-38		0.029650895	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	14q11.2	NR	rs2239630-A	0.51778	4E-12		0.034378	[0.025-0.044] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs2239630-G	0.533964	6E-156				Affymetrix, Illumina [23467995] (imputed)	N
764	chr14	23589348	23589349	rs2239630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	14q11.2	NR	rs2239630-G	0.555952	5E-146		0.048843	[0.045-0.053] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
764	chr14	23589348	23589349	rs2239630	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	14q11.2	CEBPE	rs2239630-A	0.45	2E-21		1.28	[1.22-1.35]	Affymetrix, Illumina [~ 6118121] (imputed)	N
764	chr14	23589348	23589349	rs2239630	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	14q11.2	CEBPE	rs2239630-?	NR	4E-10		0.03734	[0.026-0.049] unit increase novel	Illumina [6108953] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5597	2E-38		0.04679493	[0.04-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5597	4E-9		0.02120819	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5597	2E-37		0.04630718	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5596	3E-53		0.05541895	[0.048-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5595	1E-52		0.05522716	[0.048-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23589348	23589349	rs2239630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	14q11.2	CEBPE	rs2239630-G	0.5596	6E-41		0.04845306	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23592516	23592517	rs28479481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	14q11.2	CEBPE	rs28479481-T	0.0616	3E-22		0.07067546	[0.056-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23592516	23592517	rs28479481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	14q11.2	CEBPE	rs28479481-T	0.0616	6E-28		0.07908951	[0.065-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
764	chr14	23592516	23592517	rs28479481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	14q11.2	CEBPE	rs28479481-T	0.0615	5E-27		0.07840615	[0.064-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
765	chr14	23597734	23597735	rs10132060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q11.2		rs10132060-?	NR	2E-9				NR [~ 8900000] (imputed)	N
765	chr14	23605972	23605973	rs3783436	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q11.2	NR	rs3783436-T	NR	8E-9		5.767	z score increase	Affymetrix [10847151] (imputed)	N
765	chr14	23649892	23649893	rs55778614	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC7A8	rs55778614-?	NR	5E-9	(female)	1.39813	[NR] unit decrease	Affymetrix [NR] (imputed)	N
765	chr14	23689023	23689024	rs74633866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q11.2		rs74633866-A	NR	3E-14		0.0207	[0.015-0.026] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
765	chr14	23690442	23690442	rs569275216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q11.2		rs569275216-GA	NR	3E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
765	chr14	23698565	23698566	rs75170914	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q11.2	NR	rs75170914-T	0.255255	5E-26		0.012514	[0.0099-0.0151] unit increase	Affymetrix [16582621] (imputed)	N
765	chr14	23698565	23698566	rs75170914	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q11.2	NR	rs75170914-T	0.255255	6E-22		0.0124814	[0.0097-0.0152] unit increase	Affymetrix [16582614] (imputed)	N
765	chr14	23702055	23702056	rs178761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs178761-G	0.273801	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
765	chr14	23709314	23709315	rs2064482	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q11.2	NR	rs2064482-T	0.25504499999999997	2E-43		0.012486	[0.011-0.014] unit increase	Affymetrix [16582909] (imputed)	N
765	chr14	23709314	23709315	rs2064482	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q11.2	NR	rs2064482-T	0.25504499999999997	2E-33		0.0123147	[0.01-0.014] unit increase	Affymetrix [16582965] (imputed)	N
765	chr14	23714681	23714682	rs17128091	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q11.2	NR	rs17128091-C	0.25586	3E-20		0.0126346	[0.0099-0.0154] unit increase	Affymetrix [16585854] (imputed)	N
765	chr14	23714681	23714682	rs17128091	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q11.2	NR	rs17128091-C	0.25586	6E-15		0.0122557	[0.0091-0.0155] unit increase	Affymetrix [16585866] (imputed)	N
765	chr14	23714681	23714682	rs17128091	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	14q11.2	NR	rs17128091-G	0.744091	7E-9		0.0162945	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
765	chr14	23719691	23719691	rs71425078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q11.2	NR	rs71425078-I	0.393634	5E-16		0.017141	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
765	chr14	23719692	23719692	rs34825470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q11.2	C14orf164	rs34825470-CA	0.393758	8E-9		0.013822219	[0.0091-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr14	23725146	23725147	rs977870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs977870-G	0.492524	3E-14				Affymetrix, Illumina [17210439] (imputed)	N
766	chr14	23731855	23731855	rs139713000	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q11.2	NR	rs139713000-CT	0.19637099999999996	1E-15		0.0282908	[0.021-0.036] unit increase	Affymetrix [16577313] (imputed)	N
766	chr14	23733113	23733114	rs56902258	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q11.2	C14orf164	rs56902258-T	0.803803	2E-9		0.0150826	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
766	chr14	23746268	23746269	rs1057119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q11.2		rs1057119-G	0.18068	8E-12		0.0182439	[0.013-0.023] unit increase	Illumina [13479295] (imputed)	N
766	chr14	23746268	23746269	rs1057119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q11.2	NR	rs1057119-G	NR	2E-12		0.0208	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
766	chr14	23746268	23746269	rs1057119	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q11.2	HOMEZ	rs1057119-?	NR	9E-14		0.028170269	[0.021-0.036] unit increase	Illumina [27896057] (imputed)	N
766	chr14	23746268	23746269	rs1057119	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	14q11.2	NR	rs1057119-C	0.7725	9E-10		0.0134	[0.0091-0.0177] unit increase	NR [~ 27400000] (imputed)	N
766	chr14	23749036	23749037	rs35759537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q11.2		rs35759537-T	NR	2E-31		0.0191	[0.016-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
766	chr14	23749036	23749037	rs35759537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	HOMEZ	rs35759537-T	NR	2E-14		0.0272827	[0.02-0.034] unit increase	Affymetrix [321016] (imputed)	N
766	chr14	23749036	23749037	rs35759537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q11.2	HOMEZ	rs35759537-T	NR	2E-11		0.0259047	[0.018-0.033] unit increase	Affymetrix [323123] (imputed)	N
766	chr14	23754579	23754580	rs17256211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q11.2		rs17256211-G	NR	8E-21		0.0159	[0.013-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
766	chr14	23754579	23754580	rs17256211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q11.2		rs17256211-G	NR	4E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
766	chr14	23754579	23754580	rs17256211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	HOMEZ	rs17256211-A	NR	4E-8		0.0162959	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
766	chr14	23754579	23754580	rs17256211	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	14q11.2		rs17256211-G	0.65	2E-6		0.01	nmol/L increase	NR [NR] (imputed)	N
766	chr14	23754579	23754580	rs17256211	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q11.2		rs17256211-G	0.65	5E-12				NR [NR] (imputed)	N
766	chr14	23754579	23754580	rs17256211	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q11.2		rs17256211-G	0.65	1E-8		0.009	% increase	NR [NR] (imputed)	N
766	chr14	23754579	23754580	rs17256211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q11.2	HOMEZ	rs17256211-G	0.648534	3E-13		0.017267516	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
766	chr14	23755597	23755598	rs2295124	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q11.2	HOMEZ, PPP1R3E	rs2295124-G	0.72	5E-10		6.21	z-score increase	Affymetrix [4311822] (imputed)	N
766	chr14	23755597	23755598	rs2295124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q11.2		rs2295124-?	NR	8E-9				NR [~ 8900000] (imputed)	N
766	chr14	23755606	23755607	rs2295125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q11.2	HOMEZ	rs2295125-G	0.708327	2E-12		0.017426321	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr14	23755606	23755607	rs2295125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q11.2	HOMEZ	rs2295125-G	0.708334	3E-16		0.020049263	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr14	23755606	23755607	rs2295125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q11.2	HOMEZ	rs2295125-G	0.708339	1E-15		0.019605678	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr14	23756603	23756604	rs7159281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	14q11.2		rs7159281-G	0.509823	6E-9		0.0158272	[0.01-0.021] unit increase	Illumina [13479924] (imputed)	N
766	chr14	23756603	23756604	rs7159281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	HOMEZ	rs7159281-A	NR	3E-9		0.0178837	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
766	chr14	23756603	23756604	rs7159281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q11.2	NR	rs7159281-G	0.671662	1E-11		0.013476	[0.0096-0.0174] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
766	chr14	23761093	23761094	rs12050260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q11.2		rs12050260-?	NR	8E-12				NR [~ 8900000] (imputed)	N
766	chr14	23761093	23761094	rs12050260	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	14q11.2	MYH6	rs12050260-T	0.35	3E-8		0.19	[0.13-0.25] unit increase	Affymetrix [~ 9800000] (imputed)	N
766	chr14	23761093	23761094	rs12050260	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q11.2	HOMEZ, PPP1R3E	rs12050260-T		3E-7		0.21	unit increase	Affymetrix [at least 2696785] (imputed)	N
766	chr14	23761093	23761094	rs12050260	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q11.2	HOMEZ, PPP1R3E	rs12050260-T		5E-8	(EA)	0.244	unit increase	Affymetrix [at least 2696785] (imputed)	N
766	chr14	23761093	23761094	rs12050260	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q11.2	HOMEZ, PPP1R3E	rs12050260-T		2E-8		0.223	unit increase	Affymetrix [at least 2696785] (imputed)	N
766	chr14	23761093	23761094	rs12050260	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q11.2	HOMEZ, PPP1R3E	rs12050260-T		2E-12		0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
766	chr14	23774680	23774680	rs575640207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	BCL2L2	rs575640207-CTT	NR	4E-8		0.0175587	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
766	chr14	23774915	23774916	rs71413981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	BCL2L2	rs71413981-A	NR	5E-17		0.0319857	[0.025-0.039] unit increase	Affymetrix [321016] (imputed)	N
766	chr14	23777098	23777099	rs2231301	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q11.2	BCL2L2, BCL2L2-PABPN1	rs2231301-A	0.224	3E-7		0.0425	[0.026-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
766	chr14	23779876	23779877	rs3210043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q11.2	BCL2L2, BCL2L2-PABPN1	rs3210043-A	NR	5E-12		0.0287692	[0.021-0.037] unit increase	Affymetrix [323123] (imputed)	N
766	chr14	23779876	23779877	rs3210043	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q11.2	BCL2L2, BCL2L2-PABPN1	rs3210043-A	0.1615	4E-9		0.0524	[0.035-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
766	chr14	23793304	23793305	rs45528934	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q11.2	PABPN1	rs45528934-T	0.1623	2E-24		0.0262	[0.021-0.031] unit increase	Affymetrix [18391927] (imputed)	N
766	chr14	23793304	23793305	rs45528934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q11.2	PABPN1, BCL2L2-PABPN1	rs45528934-T	0.162413	2E-9		0.018052436	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr14	23793304	23793305	rs45528934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q11.2	NR	rs45528934-T	0.146839	3E-13				Affymetrix, Illumina [23472807] (imputed)	N
766	chr14	23793304	23793305	rs45528934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q11.2	NR	rs45528934-T	0.161765	2E-15		0.020532	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
766	chr14	23793304	23793305	rs45528934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs45528934-?	NR	6E-52				NR [~ 8900000] (imputed)	N
766	chr14	23798725	23798726	rs12885071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q11.2	PABPN1, BCL2L2-PABPN1	rs12885071-G	0.24498	2E-14		0.019929202	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
766	chr14	23802297	23802298	rs2331978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q11.2		rs2331978-G	0.490141	1E-9		0.01370896	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
766	chr14	23812236	23812237	rs12882406	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Body mass index	40 Korean ancestry low BMI individuals, 37 Korean ancestry high BMI individuals	NA	14q11.2	BCL2L2-PABPN1, PABPN1, SLC22A17	rs12882406-C	0.457	3E-6				Affymetrix [at least 710679] (imputed)	N
766	chr14	23814568	23814569	rs4982753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q11.2	SLC22A17	rs4982753-T	NR	4E-9		0.0192358	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
766	chr14	23814568	23814569	rs4982753	33281188	Suzuki H	2020-12-06	Eur J Clin Nutr	A genome-wide association study in Japanese identified one variant associated with a preference for a Japanese dietary pattern.	Adherence to a Japanese dietary pattern	14,079 Japanese ancestry individuals	NA	14q11.2		rs4982753-T	0.468	4E-8		0.105	[0.068-0.142] unit increase	Illumina [7915996] (imputed)	N
766	chr14	23821776	23821777	rs116875861	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	14q11.2		rs116875861-?	NR	7E-6		1.2065377	[1.1115704251246-1.3096185800641]	Illumina [up to 7827597] (imputed)	N
766	chr14	23829163	23829164	rs2231805	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q11.2		rs2231805-A	0.1	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
766	chr14	23831176	23831177	rs2284652	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q11.2		rs2284652-T	0.27	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
766	chr14	23840032	23840033	rs10137082	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	14q11.2	NR	rs10137082-?	NR	6E-6		1.1	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
766	chr14	23842660	23842661	rs11465506	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	14q11.2	IL25, MYH6	rs11465506-A	0.02	7E-10		6.4	[4.36-8.44] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
766	chr14	23847193	23847194	rs74037001	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	14q11.2		rs74037001-G	NR	7E-7		4.9695053	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
766	chr14	23848310	23848311	rs723840	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	14q11.2	CMTM	rs723840-C	NR	4E-6		1.63	[1.33-2.00]	Illumina [2777520] (imputed)	N
767	chr14	23861810	23861811	rs365990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q11.2		rs365990-G	NR	7E-35		0.0248	[0.021-0.029] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
767	chr14	23861810	23861811	rs365990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	14q11.2		rs365990-G	NR	9E-15		0.0903	[0.067-0.113] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	9E-9	(72 ms)	0.0338332	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	9E-13	(364 ms)	0.0414471	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	7E-9	(70 ms)	0.03331	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	7E-40	(-106 ms)	0.0749408	[0.064-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	7E-16	(322 ms)	0.0444274	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-9	(66 ms)	0.0343025	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-9	(54 ms)	0.033474	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-41	(-118 ms)	0.076026	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-35	(-100 ms)	0.0695808	[0.058-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-17	(334 ms)	0.046413	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-14	(348 ms)	0.043476	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	6E-11	(356 ms)	0.0379647	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	5E-35	(-122 ms)	0.0705875	[0.059-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	5E-28	(-96 ms)	0.0617562	[0.05-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	5E-27	(-126 ms)	0.0624475	[0.051-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-8	(82 ms)	0.0328076	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-45	(-112 ms)	0.0790333	[0.068-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-13	(310 ms)	0.040671	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-12	(362 ms)	0.0403563	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-12	(350 ms)	0.0402949	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-11	(352 ms)	0.0383259	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	4E-10	(298 ms)	0.0348991	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-9	(60 ms)	0.0349384	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-9	(296 ms)	0.0330085	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-8	(78 ms)	0.0321739	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-31	(-98 ms)	0.065298	[0.054-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-23	(-128 ms)	0.057464	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-17	(-132 ms)	0.0489491	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-15	(336 ms)	0.0442503	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-14	(338 ms)	0.0424213	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-13	(316 ms)	0.0407355	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-12	(368 ms)	0.0406562	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	3E-11	(354 ms)	0.0384848	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-9	(80 ms)	0.035929	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-9	(64 ms)	0.0356839	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-9	(62 ms)	0.0351106	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-8	(68 ms)	0.0329675	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-8	(294 ms)	0.0315015	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-44	(-114 ms)	0.0786724	[0.067-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-43	(-116 ms)	0.0781896	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-38	(-104 ms)	0.0729901	[0.062-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-37	(-120 ms)	0.0729761	[0.062-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-20	(-130 ms)	0.0539318	[0.043-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-15	(320 ms)	0.0447273	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-14	(318 ms)	0.0425954	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-13	(366 ms)	0.0425313	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-13	(-134 ms)	0.0427966	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-12	(308 ms)	0.0390128	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-11	(306 ms)	0.037373	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-10	(302 ms)	0.0352442	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	2E-10	(300 ms)	0.0355243	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-9	(58 ms)	0.0347477	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-9	(56 ms)	0.0348023	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-8	(52 ms)	0.0326699	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-44	(-110 ms)	0.0786055	[0.067-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-41	(-108 ms)	0.0767106	[0.065-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-31	(-124 ms)	0.0671059	[0.056-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-14	(346 ms)	0.0449468	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-14	(344 ms)	0.0434968	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-13	(312 ms)	0.0407047	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q11.2	MYH6	rs365990-A	0.624031	1E-10	(304 ms)	0.0355081	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
767	chr14	23861810	23861811	rs365990	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q11.2	MYH6	rs365990-G	0.5933	2E-19		0.2302	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
767	chr14	23861810	23861811	rs365990	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q11.2	MYH6	rs365990-G	0.5291	9E-15		0.1937	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
767	chr14	23861810	23861811	rs365990	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	14q11.2	MYH6	rs365990-G	0.363693	4E-10		0.7840639	[0.54-1.03] beats per minute increase	Illumina [24111857] (imputed)	N
767	chr14	23861810	23861811	rs365990	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	14q11.2	MYH6	rs365990-G	0.353	5E-45		0.564	[0.47-0.66] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
767	chr14	23861810	23861811	rs365990	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	14q11.2	MYH6	rs365990-G	0.34	9E-11	(HR)	5.25	[3.66-6.83] % s.d. increase	Illumina [306060]	N
767	chr14	23863801	23863802	rs445754	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	14q11.2	MYH6	rs445754-T	0.24	4E-22		136.0	[108.56-163.44] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
767	chr14	23863801	23863802	rs445754	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	14q11.2	MYH6	rs445754-T	0.23	3E-18	(EA)	131.0	[101.6-160.4] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
767	chr14	23864803	23864804	rs422068	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q11.2	MYH6, MYH7	rs422068-C	0.349	4E-10		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
767	chr14	23864803	23864804	rs422068	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	14q11.2	MYH6	rs422068-T	0.63962	1E-26		0.714576	[0.58-0.85] unit decrease	Affymetrix [~ 7800000] (imputed)	N
767	chr14	23864803	23864804	rs422068	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q11.2	MYH6, MYH7	rs422068-C	0.36	2E-100		0.7307	[0.66-0.8] unit increase	Affymetrix [19941912] (imputed)	N
767	chr14	23865884	23865885	rs452036	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	14q11.2	MYH6	rs452036-?	NR	4E-11				Affymetrix, Illumina [22000000] (imputed)	N
767	chr14	23865884	23865885	rs452036	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	14q11.2	MYH6	rs452036-A	0.38	4E-13		0.64	[0.46-0.82] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
767	chr14	23865884	23865885	rs452036	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	14q11.2	MYH6	rs452036-A	0.36	6E-10	(EA)	0.59	[0.39-0.79] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
767	chr14	23865884	23865885	rs452036	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	14q11.2	MYH6	rs452036-A	0.4	2E-16		0.27	[0.21-0.33] unit decrease	Illumina [247039]	N
767	chr14	23865884	23865885	rs452036	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	14q11.2	MYH6	rs452036-A	0.3588	1E-6		0.2225	[0.13-0.31] mmHg decrease	Illumina [242296]	N
767	chr14	23865884	23865885	rs452036	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	14q11.2	MYH6	rs452036-A	0.3565	4E-16		0.2612	[0.2-0.32] mmHg decrease	Illumina [242296]	N
767	chr14	23865884	23865885	rs452036	23183192	Deo R	2012-11-23	Heart Rhythm	Common genetic variation near the connexin-43 gene is associated with resting heart rate in African Americans: a genome-wide association study of 13,372 participants.	Resting heart rate	13,372 African American individuals		14q11.2	MYH6	rs452036-G	0.38	8E-7	Fixed effects analysis	9.6	[5.68-13.52] ms increase	Affymetrix, Illumina [2954965] (imputed)	N
767	chr14	23865884	23865885	rs452036	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	14q11.2	MYH6	rs452036-A	0.36	4E-14		7.8	[5.84-9.76] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
767	chr14	23866712	23866713	rs412768	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Cardiac dysrhythmias (time to event)	25,585 British ancestry cases, 257,286 British ancestry controls	NA	14q11.2	MYH645	rs412768-?	NR	2E-8				NR [~ 24000000] (imputed)	N
767	chr14	23870751	23870752	rs432256	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	14q11.2	MYH6	rs432256-A	0.25	7E-11		8.122	[5.68-10.56] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
767	chr14	23874116	23874117	rs440466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q11.2		rs440466-C	NR	1E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
767	chr14	23888182	23888183	rs28631169	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q11.2	MYH7	rs28631169-T	0.2	7E-15	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
767	chr14	23888182	23888183	rs28631169	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q11.2	MYH7	rs28631169-T	0.2	4E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
767	chr14	23904987	23904988	rs2754171	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q11.2	IL25, MYH6	rs2754171-C	0.9759	5E-55		4.2627	[3.73-4.8] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
767	chr14	23907607	23907608	rs875908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs875908-?	NR	1E-14				NR [~ 8900000] (imputed)	N
767	chr14	23977009	23977010	rs223116	20639392	Eijgelsheim M	2010-07-16	Hum Mol Genet	Genome-wide association analysis identifies multiple loci related to resting heart rate.	Resting heart rate	38,991 European ancestry individuals	NA	14q11.2	MYH7, NDNG	rs223116-A	0.24	3E-8		7.4	[4.85-9.95] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
768	chr14	24025339	24025340	rs28403575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AP1G2	5,361 Icelandic ancestry individuals	NA	14q11.2		rs28403575-T	0.08725	2E-19		0.291426	[0.23-0.35] unit decrease	Illumina [7506463] (imputed)	N
768	chr14	24033026	24033027	rs12897422	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q11.2	AP1G2	rs12897422-G	0.8584375	1E-14	(AP1G2, 12714_38_3)	0.2681533	[0.2-0.34] unit increase	Illumina [> 1000000] (imputed)	N
768	chr14	24033069	24033070	rs2281680	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q11.2	AP1G2	rs2281680-?	0.21	6E-8	(Recessive)	1.38	[1.23-1.54]	Affymetrix [319222]	N
768	chr14	24035015	24035016	rs77436356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q11.2		rs77436356-?	NR	3E-8				NR [~ 8900000] (imputed)	N
770	chr14	24253695	24253696	rs10483282	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	14q11.2	Intergenic	rs10483282-T	0.437	9E-6	(AA)	1.32	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
770	chr14	24306536	24306537	rs12889813	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	14q11.2	LOC728667	rs12889813-T	0.152	8E-7	(Cytomegalovirus)	0.2	[NR] unit decrease	Illumina [944565]	N
771	chr14	24381514	24381515	rs12436436	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	14q11.2	C14orf165, C14orf167, DHRS4	rs12436436-?	NR	5E-6				Affymetrix [1769948] (imputed)	N
771	chr14	24381514	24381515	rs12436436	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	14q11.2	NR	rs12436436-C	0.08	5E-6		1.3	[NR]	Affymetrix [1769948] (imputed)	N
771	chr14	24504120	24504121	rs140436982	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	14q11.2	NR	rs140436982-?	NR	5E-6	(AA)	1.4246	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
772	chr14	24545374	24545375	rs2070341	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q11.2	CPNE6	rs2070341-C	0.396907	4E-8		0.0112103	[0.0072-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
772	chr14	24548566	24548567	rs743271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q11.2		rs743271-?	NR	3E-14				NR [~ 8900000] (imputed)	N
772	chr14	24557641	24557642	rs11623285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q11.2		rs11623285-T	0.863	6E-11		0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
772	chr14	24557641	24557642	rs11623285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q11.2	Intergenic	rs11623285-T	0.863	1E-12	(MTAG)	0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr14	24557641	24557642	rs11623285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q11.2	Intergenic	rs11623285-T	0.8602	3E-8	(MTAG)	0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr14	24567303	24567304	rs2759409	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q11.2	NR	rs2759409-A	0.746	5E-8		0.00681395	[0.0044-0.0093] unit increase	NR [9732723] (imputed)	N
772	chr14	24572494	24572495	rs2071586	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs2071586-?	NR	2E-7		5.228	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
772	chr14	24572931	24572932	rs111723834	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	14q12	PCK2, NRL	rs111723834-A	0.02	3E-11		0.291	[0.2-0.38] unit increase	Affymetrix [~ 12000000] (imputed)	N
772	chr14	24574915	24574916	rs146868790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	NRL	rs146868790-C	0.999	5E-6	(AA)	0.34	unit increase	Illumina [NR] (imputed)	N
772	chr14	24578915	24578916	rs61227778	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	14q12	NRL	rs61227778-A	0.95	9E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
772	chr14	24609146	24609147	rs8010715	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q12	NR	rs8010715-C	0.262775408381632	9E-6	(IGP75)	0.1664	[0.093-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
772	chr14	24615434	24615435	rs4575	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide behavior	577 European ancestry cases, 1,233 European ancestry controls	NA	14q12	PSME2, RNF31	rs4575-G	0.27	8E-6		1.492	[1.252-1.778]	Illumina [794207]	N
772	chr14	24634824	24634825	rs12436555	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q12	RP11-468E2.4	rs12436555-G	0.826815	2E-8		0.0147022	[0.0096-0.0198] unit increase	Affymetrix [NR] (imputed)	N
773	chr14	24647521	24647522	rs3736840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q12	REC8	rs3736840-?	NR	4E-6	(lysine)	0.19237694	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
773	chr14	24669145	24669146	rs140677890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	14q12	NR	rs140677890-C	0.922116	8E-12		0.048056	[0.034-0.062] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
773	chr14	24669145	24669146	rs140677890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	14q12	NR	rs140677890-C	0.92296	1E-13		0.058533	[0.043-0.074] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
773	chr14	24688813	24688814	rs11158609	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	14q12	NEDD8	rs11158609-G	0.079	3E-8				Affymetrix [761050]	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q12		rs117531891-T	NR	3E-12		0.0419	[0.03-0.054] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	14q12		rs117531891-T	0.074478	3E-12		0.0418532	[0.03-0.054] unit increase	Illumina [13479135] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q12		rs117531891-T	NR	1E-18		0.0559	[0.043-0.068] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q12		rs117531891-T	0.074467	1E-18		0.0559021	[0.043-0.068] unit increase	Illumina [13478928] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q12		rs117531891-T	NR	3E-13		0.0503	[0.037-0.064] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	14q12		rs117531891-T	0.074508	3E-13		0.0503389	[0.037-0.064] unit decrease	Illumina [13476266] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q12		rs117531891-T	NR	6E-9		0.0406	[0.027-0.054] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
773	chr14	24691150	24691151	rs117531891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	14q12		rs117531891-T	0.074424	6E-9		0.0406028	[0.027-0.054] unit decrease	Illumina [13476299] (imputed)	N
773	chr14	24691150	24691151	rs117531891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs117531891-T	0.0164344	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
773	chr14	24691150	24691151	rs117531891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs117531891-T	0.0137881	4E-11				Affymetrix, Illumina [24246363] (imputed)	N
773	chr14	24691150	24691151	rs117531891	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	14q12	NEDD8, NEDD8-MDP1	rs117531891-?	NR	2E-10		0.05117	[0.035-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
773	chr14	24693223	24693224	rs34655126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	14q12	NR	rs34655126-C	0.92621	5E-15		0.056838	[0.043-0.071] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
773	chr14	24707478	24707479	rs34354104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q12	GMPR2	rs34354104-A	0.048099	3E-9		0.030628297	[0.021-0.041] unit increase	Affymetrix [93095623] (imputed)	N
773	chr14	24707478	24707479	rs34354104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q12	NR	rs34354104-A	0.048342	1E-12		0.031815	[0.023-0.041] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
773	chr14	24707478	24707479	rs34354104	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q12	NEDD8-MDP1, GMPR2	rs34354104-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
773	chr14	24707478	24707479	rs34354104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q12		rs34354104-?	NR	8E-10				NR [~ 8900000] (imputed)	N
773	chr14	24711797	24711798	rs28372734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q12	TINF2	rs28372734-?	NR	6E-15		0.06324	[0.047-0.079] unit increase novel	Illumina [6108953] (imputed)	N
773	chr14	24721326	24721327	rs41293836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	14q12		rs41293836-T	NR	6E-9		0.1523	[0.1-0.2] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
773	chr14	24721326	24721327	rs41293836	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	14q12	TINF2	rs41293836-C	NR	2E-42	(East Asian)	0.233	NR unit decrease	Illumina [6407959] (imputed)	N
773	chr14	24725140	24725141	rs3742506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs3742506-A	0.0474429	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
773	chr14	24730099	24730100	rs7151201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q12		rs7151201-?	NR	6E-9				NR [~ 8900000] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	1E-8		0.0220218	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	2E-8		0.0208854	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	1E-8		0.0220373	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	1E-8		0.0212765	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	5E-8		0.0203116	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	1E-8		0.0214452	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	1E-8		0.0217105	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	9E-9		0.0220786	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	4E-8		0.0204215	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	8E-9		0.0220766	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
773	chr14	24759318	24759319	rs941507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	14q12		rs941507-G	0.53919	4E-8		0.0209032	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
773	chr14	24771284	24771285	rs4280164	24571439	Nudel R	2014-02-26	Genes Brain Behav	Genome-wide association analyses of child genotype effects and parent-of-origin effects in specific language impairment.	Parent of origin effect on language impairment (paternal)	153 European ancestry case-parent trios, 54 European ancestry case-mother duos, 12 European ancestry case-father duos, 18 European ancestry cases	NA	14q12	C14orf21, DHRS1, CIDEB, ADCY4, LTB4R	rs4280164-G	0.767	4E-8		3.872	[NR] unit increase	Illumina [614937]	N
774	chr14	24776456	24776457	rs11158634	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q12	CIDEB, LTB4R2, NOP9	rs11158634-C	0.7949	4E-6		0.0363	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
774	chr14	24780215	24780216	rs201778907	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	14q12	CIDEB, LTB4R2	rs201778907-G	0.027	4E-16				Illumina [239042]	N
774	chr14	24789309	24789310	rs3181382	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	14q12	NR	rs3181382-?	NR	1E-7				Illumina [8270200] (imputed)	N
774	chr14	24790758	24790759	rs74385226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q12		rs74385226-?	NR	9E-8				NR [~ 8900000] (imputed)	N
774	chr14	24794439	24794440	rs17184689	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q12	ADCY4	rs17184689-T	0.7452	8E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix [18391927] (imputed)	N
774	chr14	24797460	24797461	rs2092866	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	14q12	NR	rs2092866-?	NR	9E-6		4.239	NR unit increase	Affymetrix [at least 600000] (imputed)	N
774	chr14	24804087	24804088	rs3212260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q12	ADCY4, RP11-934B9.3	rs3212260-T	NR	4E-8		0.0193096	[0.012-0.026] unit increase	Affymetrix [323123] (imputed)	N
774	chr14	24808923	24808924	rs3212253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q12		rs3212253-T	NR	3E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
774	chr14	24808923	24808924	rs3212253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q12		rs3212253-T	NR	6E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
774	chr14	24808960	24808961	rs11844732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q12	RIPK3	rs11844732-G	0.045221	5E-9		0.031152742	[0.021-0.042] unit increase	Affymetrix [93095623] (imputed)	N
774	chr14	24808960	24808961	rs11844732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q12	RIPK3	rs11844732-G	0.045238	2E-9		0.032033134	[0.022-0.042] unit increase	Affymetrix [93095623] (imputed)	N
774	chr14	24810897	24810898	rs3212240	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q12	RIPK3	rs3212240-C	0.431246	4E-15		0.0147517	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
774	chr14	24810897	24810898	rs3212240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q12		rs3212240-?	NR	2E-17				NR [~ 8900000] (imputed)	N
774	chr14	24825676	24825677	rs28637873	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	14q12	U6	rs28637873-T	0.0771092	3E-8		0.06273232	[0.041-0.085] unit decrease	Affymetrix [7288503] (imputed)	N
774	chr14	24826198	24826199	rs12878212	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	14q12		rs12878212-T	0.328173	1E-8		0.0236435	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24826200	24826201	rs12878213	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	14q12		rs12878213-T	0.329826	5E-10		0.0257748	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24826200	24826201	rs12878213	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	14q12		rs12878213-T	0.329861	2E-8		0.023284	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24826200	24826201	rs12878213	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	14q12		rs12878213-T	0.329861	2E-8		0.0233048	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24826200	24826201	rs12878213	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	14q12		rs12878213-T	0.329826	3E-9		0.0247093	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24830849	24830850	rs1950500	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	14q12	NFATC4	rs1950500-T	0.296	3E-22		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
774	chr14	24830849	24830850	rs1950500	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	14q12	NFATC4	rs1950500-T	0.3	1E-11		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
774	chr14	24830849	24830850	rs1950500	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q12	NFATC4	rs1950500-T	0.29	2E-18		0.034	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
774	chr14	24831967	24831968	rs10139343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	14q12		rs10139343-C	NR	3E-8		0.0708	[0.046-0.096] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
774	chr14	24835114	24835115	rs12590407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q12		rs12590407-A	NR	2E-10		0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
774	chr14	24835499	24835500	rs36226649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q12	NFATC4	rs36226649-C	NR	1E-8		0.0325211	[0.021-0.044] unit increase	Affymetrix [321114] (imputed)	N
774	chr14	24835499	24835500	rs36226649	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q12	NFATC4	rs36226649-T	0.9333	3E-37		0.0485	[0.041-0.056] unit decrease	Affymetrix [18391927] (imputed)	N
774	chr14	24835499	24835500	rs36226649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q12		rs36226649-?	NR	8E-64				NR [~ 8900000] (imputed)	N
774	chr14	24835499	24835500	rs36226649	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q12	RIPK3, NFATC4	rs36226649-T		3E-9		0.297	unit decrease	Affymetrix [at least 2696785] (imputed)	N
774	chr14	24848913	24848917	rs140152384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q12		rs140152384-T	NR	1E-30		0.0201	[0.017-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
774	chr14	24849126	24849127	rs8008583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q12	NR	rs8008583-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
774	chr14	24859116	24859117	rs116309956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q12	NYNRIN	rs116309956-A	NR	3E-8		0.0392603	[0.025-0.053] unit increase	Affymetrix [321114] (imputed)	N
774	chr14	24860792	24860793	rs117684527	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q12	NR	rs117684527-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
774	chr14	24860886	24860887	rs11629005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q12	NR	rs11629005-C	NR	3E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix [9000000] (imputed)	N
774	chr14	24860886	24860887	rs11629005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q12	NR	rs11629005-C	NR	1E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
774	chr14	24860886	24860887	rs11629005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q12	NR	rs11629005-C	NR	2E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
774	chr14	24869745	24869746	rs11625026	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q12	NR	rs11625026-T	0.3309	1E-9		0.001541	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
774	chr14	24869745	24869746	rs11625026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q12	NYNRIN	rs11625026-T	0.330293	8E-12		0.016619466	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
774	chr14	24871050	24871051	rs7160316	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	14q12	NR	rs7160316-?	NR	2E-6		0.61414945	[0.50-0.75]	Affymetrix, Illumina [~ 10400000] (imputed)	N
774	chr14	24871529	24871530	rs11620783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	14q12		rs11620783-C	0.568442	4E-11		0.0275605	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871529	24871530	rs11620783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	14q12		rs11620783-C	0.568442	1E-9		0.0252261	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871529	24871530	rs11620783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	14q12		rs11620783-C	0.568442	2E-12		0.0287969	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871529	24871530	rs11620783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q12		rs11620783-T	NR	1E-13		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-8		0.0224845	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	8E-12		0.0284752	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	8E-13		0.0299337	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0278892	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	4E-12		0.0288877	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-9		0.0244731	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-9		0.0245	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	5E-12		0.0287699	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	8E-14		0.0312207	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	6E-11		0.0271323	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	3E-12		0.029027	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0280458	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	14q12		rs11621792-C	0.546182	5E-11		0.0273357	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-10		0.0268682	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0283451	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-8		0.023496	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	8E-10		0.0253677	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	4E-12		0.0290232	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	2E-10		0.0264839	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	8E-11		0.0271249	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	2E-10		0.0266811	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0284386	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0281334	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	6E-12		0.0286491	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	2E-11		0.0279024	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	1E-11		0.0282754	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	4E-12		0.0290116	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs11621792-C	0.546187	5E-11		0.0270704	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
774	chr14	24871925	24871926	rs11621792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	14q12		rs11621792-T	NR	7E-15		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
774	chr14	24871925	24871926	rs11621792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q12		rs11621792-T	NR	3E-13		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
774	chr14	24871925	24871926	rs11621792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	14q12		rs11621792-T	NR	2E-15		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
774	chr14	24871925	24871926	rs11621792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q12		rs11621792-T	NR	2E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
774	chr14	24871925	24871926	rs11621792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q12		rs11621792-T	NR	1E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
774	chr14	24871925	24871926	rs11621792	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	14q12	NYNRIN	rs11621792-C	0.54696	4E-19		0.00364212	[0.0029-0.0044] unit decrease	Affymetrix [13995440] (imputed)	N
774	chr14	24871925	24871926	rs11621792	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q12	NYNRIN	rs11621792-C	0.55	2E-29		11.2	z-score increase	Affymetrix [4311822] (imputed)	N
774	chr14	24871925	24871926	rs11621792	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q12	NYNRIN	rs11621792-T	0.45	6E-13		7.2	z-score increase	Affymetrix [4312306] (imputed)	N
774	chr14	24871925	24871926	rs11621792	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q12	NR	rs11621792-T	NR	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q12	NR	rs11621792-C	0.547101	5E-43		0.0267004	[0.023-0.031] unit decrease	Affymetrix [15000001]	N
774	chr14	24871925	24871926	rs11621792	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	14q12	NYNRIN	rs11621792-C	0.547127	1E-19		0.0191305	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	14q12	NYNRIN	rs11621792-C	0.547088	2E-23		0.0210426	[0.017-0.025] unit decrease	Affymetrix [NR] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	14q12	NYNRIN	rs11621792-?	NR	9E-23		0.0255	[0.021-0.03] unit increase	Affymetrix [5701386] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q12	NR	rs11621792-C	0.546261	7E-9		0.0176248	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q12	NR	rs11621792-C	0.547031	2E-117		0.0188283	[0.017-0.02] unit increase	Affymetrix [16582909] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q12	NR	rs11621792-C	0.547669	4E-102		0.0261123	[0.024-0.029] unit increase	Affymetrix [16585854] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q12	NR	rs11621792-C	0.546324	2E-28		0.0127693	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q12	NR	rs11621792-C	0.547031	7E-90		0.0182549	[0.016-0.02] unit increase	Affymetrix [16582965] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q12	NR	rs11621792-C	0.547669	5E-71		0.0248477	[0.022-0.028] unit increase	Affymetrix [16585866] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q12	NR	rs11621792-C	0.546324	1E-25		0.012749	[0.01-0.015] unit increase	Affymetrix [16582614] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q12	NR	rs11621792-T	0.453191	2E-10		0.01275	[0.0088-0.0167] unit increase	Affymetrix [16583148] (imputed)	N
774	chr14	24871925	24871926	rs11621792	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	14q12	NR	rs11621792-T	0.452392	1E-22		0.0245363	[0.02-0.03] unit increase	Affymetrix [16585745] (imputed)	N
774	chr14	24871925	24871926	rs11621792	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs11621792-C	NR	3E-12		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24871925	24871926	rs11621792	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs11621792-C	0.551	2E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24871925	24871926	rs11621792	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs11621792-C	NR	1E-13		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24871925	24871926	rs11621792	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs11621792-C	0.551	6E-12	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24871925	24871926	rs11621792	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	14q12	NYNRIN, CBLN3	rs11621792-T	0.42	2E-8		0.037	[0.023-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
774	chr14	24872208	24872209	rs6573778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	14q12		rs6573778-T	0.482664	6E-11		0.0265302	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
774	chr14	24872208	24872209	rs6573778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	14q12		rs6573778-T	0.482664	3E-8		0.0223836	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
774	chr14	24872208	24872209	rs6573778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q12		rs6573778-C	NR	8E-41		0.0301	[0.026-0.034] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
774	chr14	24872208	24872209	rs6573778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	14q12	NR	rs6573778-C	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
774	chr14	24872208	24872209	rs6573778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	14q12	NR	rs6573778-C	NR	2E-10		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	14q12	NYNRIN	rs6573778-C	NR	9E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	14q12	NYNRIN	rs6573778-C	NR	2E-19				Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	14q12	NYNRIN	rs6573778-C	NR	2E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	14q12	NYNRIN	rs6573778-C	NR	6E-21				Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	14q12	NYNRIN	rs6573778-C	NR	4E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	14q12	NYNRIN	rs6573778-C	NR	6E-8	(EA)	1.05	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	14q12	NYNRIN	rs6573778-C	NR	1E-12		1.197	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	14q12	NYNRIN	rs6573778-C	NR	3E-9		1.253	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
774	chr14	24872208	24872209	rs6573778	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	14q12	NR	rs6573778-T	0.4152	2E-13				Affymetrix, Illumina [at least 2500000] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	3E-8		0.0226902	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	9E-10		0.0249139	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	4E-9		0.0238602	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	5E-10		0.025598	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	4E-8		0.0226707	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	1E-9		0.0250712	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	3E-8		0.0230314	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	2E-9		0.0248084	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	3E-8		0.0228717	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	1E-8		0.0235377	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	4E-8		0.0227263	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	1E-8		0.0236407	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	4E-10		0.0258546	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	7E-10		0.0255783	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	2E-8		0.0230961	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	8E-9		0.02389	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	14q12		rs72694391-T	0.517892	2E-9		0.0249671	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
774	chr14	24874025	24874026	rs72694391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	14q12		rs72694391-C	NR	7E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
774	chr14	24874192	24874193	rs72694393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q12	NYNRIN	rs72694393-T	0.480529	2E-9		0.013567313	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
774	chr14	24874192	24874193	rs72694393	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q12	NR	rs72694393-G	0.519148	2E-14		0.0161559	[0.012-0.02] unit increase	NR [NR]	N
774	chr14	24874458	24874459	rs58338807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q12	NR	rs58338807-A	NR	3E-10		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
774	chr14	24875831	24875832	rs11621594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	14q12		rs11621594-A	0.559556	8E-10		0.0254411	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24875831	24875832	rs11621594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	14q12		rs11621594-A	0.559556	5E-10		0.0258419	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
774	chr14	24876236	24876237	rs11626929	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	14q12		rs11626929-C	NR	1E-5		0.4291	unit increase	Illumina [8524982] (imputed)	N
774	chr14	24878369	24878370	rs12437434	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	14q12	NYNRIN	rs12437434-C	0.713	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
774	chr14	24878398	24878399	rs149771079	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	14q12	NYNRIN	rs149771079-A	0.012	5E-8		3.33		Illumina [31245]	N
774	chr14	24881985	24881986	rs36012880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q12	NYNRIN	rs36012880-C	0.476547	1E-9		0.01356346	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
774	chr14	24881985	24881986	rs36012880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs36012880-C	0.379216	7E-10				Affymetrix, Illumina [24653286] (imputed)	N
774	chr14	24881985	24881986	rs36012880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q12	NR	rs36012880-C	0.474437	1E-12		0.013214	[0.0096-0.0169] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
774	chr14	24883057	24883058	rs2332328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs2332328-C	NR	2E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883057	24883058	rs2332328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs2332328-C	0.533	4E-10	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883057	24883058	rs2332328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs2332328-C	NR	7E-14		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883057	24883058	rs2332328	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs2332328-C	0.533	2E-12	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883886	24883887	rs8017377	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	14q12		rs8017377-A	0.4266	1E-7		0.9699	[0.61-1.33] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
774	chr14	24883886	24883887	rs8017377	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs8017377-G	NR	2E-11		0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883886	24883887	rs8017377	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs8017377-G	0.533	4E-10	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883886	24883887	rs8017377	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs8017377-G	NR	7E-14		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883886	24883887	rs8017377	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q12	NR	rs8017377-G	0.533	2E-12	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
774	chr14	24883886	24883887	rs8017377	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	14q12	NYNRIN	rs8017377-A	0.459	2E-14	(Trans-ethnic initial)	0.0303	[0.023-0.038] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
774	chr14	24883886	24883887	rs8017377	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	14q12	NYNRIN	rs8017377-A	0.46	3E-15		0.03	[NR] unit increase	NR [NR] (imputed)	N
774	chr14	24883886	24883887	rs8017377	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	14q12	CBLN3, KIAA0323	rs8017377-T	0.48	4E-11		1.17	[0.8-1.54] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
774	chr14	24899363	24899364	rs4344657	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs4344657-G	0.24	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
774	chr14	24899363	24899364	rs4344657	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs4344657-G	0.2712	2E-9				NR [9056863] (imputed)	N
774	chr14	24899363	24899364	rs4344657	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q12	KHNYN	rs4344657-C	0.7292	8E-14		0.0168	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
774	chr14	24901843	24901844	rs2255591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q12		rs2255591-?	NR	3E-8				NR [~ 8900000] (imputed)	N
774	chr14	24903244	24903245	rs7143804	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q12		rs7143804-C	0.24	3E-13		7.31	z score increase	Affymetrix [9061022] (imputed)	N
775	chr14	24954001	24954002	rs2877649	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	14q12	AK056368	rs2877649-T	0.0339	2E-6		0.1877	[NR] unit increase	Illumina [1216189] (imputed)	N
776	chr14	25044211	25044212	rs11623400	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	14q12	CTSG	rs11623400-?	NR	8E-6		1.012001	[1.006711-1.017319]	Illumina [at least 4756722] (imputed)	N
776	chr14	25044211	25044212	rs11623400	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	14q12	CTSG	rs11623400-?	NR	8E-6		1.012026	[1.006737-1.017342]	Illumina [at least 4756722] (imputed)	N
776	chr14	25101588	25101589	rs11539752	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q12	GZMB	rs11539752-G	0.7759375	3E-83	(GZMB, 14041_13_3)	0.56367886	[0.51-0.62] unit increase	Illumina [> 1000000] (imputed)	N
776	chr14	25102159	25102160	rs8192917	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GZMB	5,361 Icelandic ancestry individuals	NA	14q12		rs8192917-C	0.2211	5E-131		0.52282	[0.48-0.56] unit decrease	Illumina [7506463] (imputed)	N
776	chr14	25102159	25102160	rs8192917	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q12	GZMB	rs8192917-T	0.787	7E-124	(Granzyme B, GZMB.4133.54.2)	0.67	[0.61-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
776	chr14	25102159	25102160	rs8192917	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q12	GZMB	rs8192917-T	0.787	6E-352	(Granzyme B, GZMB.14041.13.3)	1.01	[0.95-1.07] unit increase	Affymetrix [10572788] (imputed)	N
776	chr14	25102159	25102160	rs8192917	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	14q12	GZMB	rs8192917-C	0.2374	9E-16		1.247	[1.18-1.32]	Illumina [8966411] (imputed)	N
776	chr14	25102159	25102160	rs8192917	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	14q12	GZMB	rs8192917-G	0.236	3E-8		1.28	[1.17-1.39]	Illumina [520460]	N
776	chr14	25103413	25103414	rs2273844	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q12	GZMB	rs2273844-G	0.775	2E-8	(GZMB, 4133_54_2)	0.16553229	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
776	chr14	25109629	25109630	rs8021058	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Interleukin-10 levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 51 European or unknown ancestry unexposed individuals	NA	14q12	GZMB	rs8021058-C	0.6	4E-8		1.483	[0.95-2.01] unit increase	Illumina [10307610] (imputed)	N
776	chr14	25120381	25120382	rs7154975	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	14q12	GZMB	rs7154975-G	0.531	3E-6	(EA)	0.094	[0.055-0.133] unit decrease	Illumina [NR] (imputed)	N
777	chr14	25271519	25271520	rs854384	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Hippocampal volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	14q12	STXBP6	rs854384-?	NR	1E-6		2.0E-4	[NR] unit increase	Illumina [478011]	N
777	chr14	25273900	25273901	rs57611377	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	14q12	NR	rs57611377-T	NR	1E-7	(GEE model)	0.95611	[0.6-1.31] unit increase	NR [NR] (imputed)	N
778	chr14	25364701	25364702	rs76517716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs76517716-A	0.02091	2E-8	(NPC2)	0.05034	NR unit increase	Illumina [1671387] (imputed)	N
779	chr14	25438249	25438250	rs7141943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q12	NR	rs7141943-G	0.394677	7E-15		0.015879	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
779	chr14	25438249	25438250	rs7141943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q12	NR	rs7141943-G	0.394675	3E-10		0.013269	[0.0091-0.0174] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
779	chr14	25438249	25438250	rs7141943	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	14q12	STXBP6	rs7141943-?	NR	1E-8		0.03236	[0.021-0.043] unit increase novel	Illumina [6108953] (imputed)	N
779	chr14	25438249	25438250	rs7141943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q12	STXBP6	rs7141943-G	0.394	4E-10		0.02298218	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25443739	25443740	rs9323580	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs9323580-G	0.32	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
779	chr14	25443739	25443740	rs9323580	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs9323580-G	0.2978	4E-8				NR [9056863] (imputed)	N
779	chr14	25445361	25445362	rs2004925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	14q12		rs2004925-A	0.484762	1E-22		0.0331779	[0.027-0.04] unit increase	Illumina [13479091] (imputed)	N
779	chr14	25445361	25445362	rs2004925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	14q12		rs2004925-A	0.482915	3E-18		0.0381322	[0.03-0.047] unit increase	Illumina [13471440] (imputed)	N
779	chr14	25445361	25445362	rs2004925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q12		rs2004925-A	NR	2E-11		0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q12	STXBP6	rs2004925-A	0.393349	1E-32		0.027052576	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q12	STXBP6	rs2004925-A	0.39326	8E-18		0.01980514	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q12	STXBP6	rs2004925-A	0.393326	1E-25		0.02397862	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q12	STXBP6	rs2004925-A	0.393311	7E-24		0.023068883	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q12	STXBP6	rs2004925-A	0.393427	5E-14		0.017115716	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	14q12	NR	rs2004925-G	0.51364	8E-22		0.045609	[0.036-0.055] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2004925-A	0.417411	3E-17				Affymetrix, Illumina [19872809] (imputed)	N
779	chr14	25445361	25445362	rs2004925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2004925-A	0.416673	6E-11				Affymetrix, Illumina [19905671] (imputed)	N
779	chr14	25445361	25445362	rs2004925	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	14q12	STXBP6	rs2004925-?	NR	2E-16		0.04678	[0.036-0.058] unit increase novel	Illumina [6108953] (imputed)	N
779	chr14	25447079	25447080	rs75772222	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	14q12		rs75772222-T	NR	1E-10		0.0226	[0.016-0.029] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
779	chr14	25447079	25447080	rs75772222	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	14q12		rs75772222-T	0.11	1E-37		0.02	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
779	chr14	25447079	25447080	rs75772222	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	14q12		rs75772222-T	0.11	3E-8		0.021	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	14q12		rs8017228-C	0.474728	4E-11		0.0307028	[0.022-0.04] unit increase	Illumina [13467171] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q12		rs8017228-C	NR	8E-53		0.033	[0.029-0.037] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q12		rs8017228-C	NR	1E-67		0.0363	[0.032-0.04] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	14q12		rs8017228-A	0.606	3E-27				Affymetrix [10369434] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	14q12		rs8017228-A	0.606	3E-33				Affymetrix [10369434] (imputed)	N
779	chr14	25449225	25449226	rs8017228	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	14q12		rs8017228-A	0.606	8E-9				Affymetrix [10369434] (imputed)	N
779	chr14	25449225	25449226	rs8017228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q12		rs8017228-?	NR	7E-17				NR [~ 8900000] (imputed)	N
779	chr14	25449225	25449226	rs8017228	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	14q12	STXBP6	rs8017228-?	NR	4E-15		0.0333	[0.025-0.042] unit increase novel	Illumina [6108953] (imputed)	N
779	chr14	25459481	25459482	rs2332462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	14q12	NR	rs2332462-T	0.523494	3E-21		0.034581	[0.027-0.042] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
779	chr14	25459481	25459482	rs2332462	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	14q12	STXBP6	rs2332462-C	0.3932	3E-12		0.02558319	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q12		rs2038700-C	NR	3E-63		0.0333	[0.029-0.037] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
779	chr14	25461988	25461989	rs2038700	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	14q12		rs2038700-T	0.607	2E-20				Affymetrix [10369434] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393752	3E-53		0.034834348	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393636	1E-20		0.021337865	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.39363	5E-18		0.019887181	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393897	6E-17		0.019346988	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393891	7E-13		0.016578134	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393679	2E-16		0.018624494	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393707	5E-53		0.03480425	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393687	9E-14		0.016997041	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q12	STXBP6	rs2038700-C	0.393709	4E-70		0.04028433	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2038700-C	0.421037	2E-91				Affymetrix, Illumina [24649327] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q12	NR	rs2038700-C	0.394624	5E-74		0.034424	[0.031-0.038] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2038700-C	0.421402	8E-15				Affymetrix, Illumina [24588908] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q12	NR	rs2038700-C	0.394751	2E-14		0.014349	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2038700-C	0.415272	3E-69				Affymetrix, Illumina [23114412] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q12	NR	rs2038700-C	0.394281	1E-64		0.033462	[0.03-0.037] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs2038700-C	0.416148	1E-116				Affymetrix, Illumina [23467995] (imputed)	N
779	chr14	25461988	25461989	rs2038700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	14q12	NR	rs2038700-C	0.394192	3E-96		0.039975	[0.036-0.044] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
779	chr14	25461988	25461989	rs2038700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q12		rs2038700-?	NR	1E-58				NR [~ 8900000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3934	3E-24		0.0373641	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3933	5E-24		0.03721548	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3933	1E-21		0.03521934	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3934	6E-22		0.03538628	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3933	6E-27		0.03973596	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3933	2E-35		0.04558519	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3933	1E-23		0.03695481	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25461988	25461989	rs2038700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q12	STXBP6	rs2038700-C	0.3935	2E-9		0.02187056	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr14	25472082	25472083	rs7154613	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		STXBP6	rs7154613-T	NR	1E-6		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
779	chr14	25479541	25479542	rs11850957	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	14q12	STXBP6	rs11850957-T	0.21	6E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
779	chr14	25480234	25480235	rs8004566	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs8004566-G	NR	4E-9		1.0618		Affymetrix [9869154] (imputed)	N
779	chr14	25494069	25494070	rs148797562	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	14q12	NR	rs148797562-G	NR	4E-6		2.235	[1.59-3.15]	Illumina [13976150] (imputed)	N
779	chr14	25503798	25503799	rs10147992	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	14q12	STXBP6	rs10147992-G	0.47	1E-8	(monocyte count)	0.061	[0.04-0.08] unit increase	Illumina [2178645] (imputed)	N
779	chr14	25549072	25549073	rs117247272	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	14q12	STXBP6	rs117247272-A	0.0038	7E-6		0.3901	[0.22-0.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
780	chr14	25631041	25631042	rs10142105	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	14q12	STXBP6, NOVA1	rs10142105-C	0.086968	7E-8		0.603414	[0.38-0.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
782	chr14	25888676	25888677	rs2754084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q12	NA	rs2754084-A	0.5247	2E-20		0.0158	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
782	chr14	25889338	25889339	rs2754087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs2754087-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
782	chr14	25893031	25893032	rs144190017	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs144190017-T	0.004	2E-7		0.127	unit decrease	Illumina [NR] (imputed)	N
782	chr14	25896758	25896759	rs770643275	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	14q12	NR	rs770643275-?	NR	2E-6		1.34891	[0.79-1.91] unit increase	NR [13958389] (imputed)	N
782	chr14	25927831	25927832	rs12879423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q12		rs12879423-?	NR	6E-26				NR [~ 8900000] (imputed)	N
782	chr14	25927831	25927832	rs12879423	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q12	NR	rs12879423-?	NR	5E-6	(female)	0.11886	[0.068-0.17] unit increase	Affymetrix [7794483] (imputed)	N
782	chr14	25927831	25927832	rs12879423	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q12	NR	rs12879423-?	NR	4E-7	(male)	0.19022	[0.12-0.26] unit increase	Affymetrix [7794483] (imputed)	N
782	chr14	25927831	25927832	rs12879423	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q12	NR	rs12879423-?	NR	2E-11		0.1583	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
782	chr14	25928178	25928179	rs10132280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q12	NA	rs10132280-A	0.3106	3E-10		0.0116	[0.0081-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	14q12	NR	rs10132280-A	0.3106	3E-10		0.0116	[0.0081-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q12	NA	rs10132280-A	0.311	2E-33		0.0214	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q12	NA	rs10132280-A	0.311	2E-33		0.0214	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q12	NR	rs10132280-C	NR	6E-15		0.022	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
782	chr14	25928178	25928179	rs10132280	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	14q12	STXBP6	rs10132280-?	NR	4E-6	(NXPH1)	0.117248	[0.067-0.167] unit decrease	Illumina [4020654] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q12	STXBP6, NOVA1	rs10132280-A	0.32	6E-13		0.022	[0.016-0.028] unit decrease	Illumina [6108953] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	STXBP6	rs10132280-C	0.6826	9E-7	(EA)	0.0228	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	STXBP6	rs10132280-C	0.6700999999999999	6E-7		0.0222	[0.014-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	STXBP6	rs10132280-?	NR	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	STXBP6	rs10132280-?	NR	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	STXBP6	rs10132280-C	0.6826	4E-8	(EA)	0.0231	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	STXBP6	rs10132280-C	0.6700999999999999	3E-8		0.0221	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q12	NOVA1	rs10132280-A	0.3316	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	14q12	NOVA1	rs10132280-A	0.3316	9E-6		0.018	[0.01-0.026] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q12	NOVA1	rs10132280-A	0.3316	2E-7		0.0183	[0.011-0.025] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	14q12	STXBP6	rs10132280-C	NR	8E-6	(additive model)	0.02	[0.01-0.03] unit increase	NR [9288881] (imputed)	N
782	chr14	25928178	25928179	rs10132280	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q12	NR	rs10132280-A	0.319714929358119	5E-13		0.021317558	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
782	chr14	25928178	25928179	rs10132280	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	STXBP6	rs10132280-C	0.682	1E-11	(EA)	0.023	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
782	chr14	25928178	25928179	rs10132280	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	STXBP6	rs10132280-C	0.68	5E-11	(EA, men)	0.029	[0.02-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
782	chr14	25928178	25928179	rs10132280	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	STXBP6	rs10132280-C	0.674	1E-11		0.022	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
782	chr14	25928178	25928179	rs10132280	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	STXBP6	rs10132280-A	0.3191	2E-9	(EA)	0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr14	25928178	25928179	rs10132280	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	STXBP6	rs10132280-A	0.3191	1E-7	(EA, men)	0.0272	[0.017-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr14	25928178	25928179	rs10132280	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	STXBP6	rs10132280-A	0.3212	5E-9	(EA)	0.0224	[0.015-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr14	25928178	25928179	rs10132280	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	STXBP6	rs10132280-A	0.3212	1E-6	(EA, men)	0.0257	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
782	chr14	25930987	25930988	rs8015400	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q12	STXBP6	rs8015400-C	0.323165	7E-18		0.0126459	[0.0098-0.0155] unit decrease	Affymetrix [12370749]	N
782	chr14	25930987	25930988	rs8015400	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q12	NR	rs8015400-C	0.3218	5E-14		0.019945798	[0.015-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
782	chr14	25932584	25932585	rs1950436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q12		rs1950436-G	NR	1E-22		0.0208	[0.017-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
782	chr14	25935160	25935161	rs7154982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs7154982-?	NR	2E-24				Affymetrix [~ 8270000] (imputed)	N
782	chr14	25947435	25947436	rs11159347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q12		rs11159347-T	NR	2E-22		0.0179	[0.014-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
782	chr14	25947435	25947436	rs11159347	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q12	NR	rs11159347-C	0.3435	1E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
782	chr14	25947435	25947436	rs11159347	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q12	NR	rs11159347-T	0.677764	2E-10		0.0461324	[0.032-0.06] unit increase	Affymetrix [17914406] (imputed)	N
783	chr14	25955501	25955502	rs1950427	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Finger osteoarthritis severity (hand Klsum)	1,791 Dutch ancestry individuals	1,203 individuals	14q12	STXBP6, NOVA1	rs1950427-T	0.12	3E-7		0.66	[0.41-0.91] unit increase	Illumina [10500000] (imputed)	N
783	chr14	25972955	25972956	rs77008653	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	14q12		rs77008653-A	0.988635	2E-6		0.0654328	[0.039-0.092] unit decrease	Illumina [13900000] (imputed)	N
783	chr14	26004711	26004712	rs61983410	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	14q12	STXBP6	rs61983410-C	0.787	1E-7		1.2658228	[NR]	Illumina [up to 49000000] (imputed)	N
783	chr14	26021984	26021985	rs12435940	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q12	STXBP6, NOVA1	rs12435940-A	0.96	4E-7		0.485	[0.3-0.67] unit decrease	Illumina [~ 9000000] (imputed)	N
783	chr14	26042993	26042994	rs1955873	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q12	STXBP6, NOVA1	rs1955873-A	0.94	2E-7	(EA)	0.5923	[0.37-0.81] unit decrease	Illumina [~ 9000000] (imputed)	N
783	chr14	26049728	26049729	rs56244258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs56244258-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
784	chr14	26108663	26108664	rs8011829	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	14q12	NR	rs8011829-G	0.471	4E-7		0.37	[0.23-0.51] unit increase	Illumina [9469131] (imputed)	N
784	chr14	26108663	26108664	rs8011829	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	14q12	NR	rs8011829-G	0.47063	2E-6		0.07771571	[0.046-0.11] unit increase	Illumina [9469131] (imputed)	N
784	chr14	26129565	26129566	rs12586774	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q12	LOC401767	rs12586774-A	0.094	4E-7	(Total cysteine )	0.03	[NR] umol/L increase	Illumina [899892]	N
784	chr14	26130023	26130024	rs8005092	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	26,063 European ancestry men	NA	14q12	SNORD37	rs8005092-T	NR	4E-8		3.02835	[1.95-4.11] unit increase	NR [9955952] (imputed)	N
784	chr14	26136610	26136611	rs1475010	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Overweight status	531 Bangladeshi ancestry overweight females, 1,269 Bangladeshi ancestry normal weight females, 338 Bangladeshi ancestry overweight males, 1,106 Bangladeshi ancestry normal weight males	NA	14q12	STXBP6, NOVA1	rs1475010-C	0.307	6E-7		0.06	[0.036-0.084] unit increase	Illumina [1208102] (imputed)	N
784	chr14	26141026	26141027	rs8015760	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q12	NR	rs8015760-?	NR	2E-8				Affymetrix [NR]	N
784	chr14	26164758	26164759	rs17110309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q12	NOVA1	rs17110309-?	NR	7E-6	(taurine)	0.36736205	[0.21-0.53] unit decrease	Affymetrix [at least 2500000] (imputed)	N
785	chr14	26235469	26235470	rs10148451	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	14q12	NR	rs10148451-?		3E-6				Illumina [892589]	N
787	chr14	26488466	26488467	rs862946	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	14q12	CYB5AP5	rs862946-A	0.112	2E-7		0.043	[0.027-0.059] unit increase	Illumina [747076]	N
787	chr14	26492232	26492233	rs862942	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	14q12	STXBP6, NOVA1	rs862942-?		3E-6				Illumina [7830195] (imputed)	N
787	chr14	26550404	26550405	rs34926168	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	14q12	NOVA1	rs34926168-C	NR	4E-6		0.14	[0.081-0.199] unit increase	Illumina [5527232] (imputed)	N
788	chr14	26670924	26670925	rs1546939	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (non-dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	14q12	intergenic	rs1546939-T	0.37	9E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
788	chr14	26672552	26672553	rs199849618	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	14q12	NR	rs199849618-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
788	chr14	26679399	26679400	rs1016246	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	14q12	CYB5AP5	rs1016246-?	NR	2E-6				Affymetrix, Illumina [15642250] (imputed)	N
789	chr14	26825446	26825447	rs73597906	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	14q12	NR	rs73597906-A	NR	8E-6		2.005	[1.48-2.72]	Illumina [13976150] (imputed)	N
789	chr14	26854295	26854296	rs10131410	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs10131410-G	0.18	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
789	chr14	26854295	26854296	rs10131410	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs10131410-G	0.1945	3E-9				NR [9056863] (imputed)	N
790	chr14	26870127	26870128	rs1474966	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q12		rs1474966-G	0.17	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
790	chr14	26905736	26905737	rs1245194	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q12		rs1245194-?	NR	4E-9				Affymetrix [NR] (imputed)	N
790	chr14	26918467	26918468	rs1245193	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs1245193-?	NR	1E-6		4.853	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
790	chr14	26919588	26919588	rs149590260	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	14q12	NR	rs149590260-?		5E-10		0.0156886	[0.011-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
790	chr14	26935220	26935221	rs1245214	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q12	NR	rs1245214-G	0.250497	1E-8		0.04131682	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
790	chr14	26935220	26935221	rs1245214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q12	Intergenic	rs1245214-A	0.7517	1E-8		0.0189	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
790	chr14	26935304	26935305	rs12101183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs12101183-A	0.2392	3E-18	(conditional-joint)	0.0143	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
790	chr14	26939473	26939474	rs1245213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs1245213-A	0.7404	1E-13	(MTAG)	0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
790	chr14	26954077	26954078	rs6575005	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	14q12	NR	rs6575005-T	NR	4E-9		0.858	unit increase	Affymetrix [14661600] (imputed)	N
790	chr14	26959321	26959322	rs178203	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q12	Intergenic	rs178203-T	0.2505	6E-14	(MTAG)	0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
790	chr14	26979192	26979193	rs178184	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs178184-T	0.2455	1E-21	(MTAG)	0.0146	[0.012-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
790	chr14	26979411	26979412	rs178183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs178183-T	0.2455	5E-19		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
790	chr14	26981099	26981100	rs8020034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q12		rs8020034-?	NR	3E-12				NR [~ 8900000] (imputed)	N
791	chr14	27028188	27028189	rs178165	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs178165-A	NR	3E-9		5.934	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
791	chr14	27043303	27043304	rs1885076	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs1885076-?	NR	3E-6		4.657	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
791	chr14	27048464	27048465	rs77092939	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	14q12	NR	rs77092939-?	0.1169	4E-8		1.0526897	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
791	chr14	27073423	27073424	rs112098641	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Trunk bone mineral content	2,294 White British ancestry female individuals	NA	14q12		rs112098641-G	NR	4E-8		107.64	g increase	NR [6137607] (imputed)	N
791	chr14	27073423	27073424	rs112098641	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Gynoid bone mass	2,294 White British ancestry female individuals	NA	14q12		rs112098641-G	NR	5E-8		30.62	g increase	NR [6137607] (imputed)	N
791	chr14	27090387	27090388	rs1115240	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	14q12	NR	rs1115240-C	0.7462	7E-10		0.015739031	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
791	chr14	27107165	27107166	rs7140993	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	14q12	MLLT10	rs7140993-G	0.738394	4E-11	(EA)	0.00933716	[0.0066-0.0121] unit increase	Affymetrix [~ 8800000] (imputed)	N
791	chr14	27125764	27125765	rs8008716	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	14q12	NOVA1	rs8008716-G	0.087	7E-8		1.712	[1.52-1.91]	Illumina [~ 2300000] (imputed)	N
791	chr14	27126789	27126790	rs61989671	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q12	NOVA1-AS1	rs61989671-C	0.1613	2E-8		0.015221139	[0.0099-0.0205] unit increase	Affymetrix [up to 18485882] (imputed)	N
792	chr14	27162903	27162904	rs8006700	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs8006700-A	NR	5E-10		6.22	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
792	chr14	27170461	27170462	rs1950416	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs1950416-?	NR	3E-6		4.668	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
792	chr14	27209692	27209693	rs61974021	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	14q12		rs61974021-?	NR	4E-6	(ser_lg_lmp)	4.17		Illumina [11595112] (imputed)	N
792	chr14	27219913	27219914	rs1956822	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Entorhinal cortical thickness	2,643 Korean ancestry individuals	NA	14q12		rs1956822-G	0.39	5E-7		0.14	[0.081-0.199] unit decrease	NR [3930740] (imputed)	N
792	chr14	27226485	27226486	rs151041106	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q12	NOVA1-AS1	rs151041106-A	0.9815	5E-6		0.1191	[0.068-0.17] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
792	chr14	27246846	27246847	rs192030704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs192030704-C	0.998	3E-6	(AA)	0.258	unit increase	Illumina [NR] (imputed)	N
792	chr14	27260042	27260043	rs1951082	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	14q12	intergenic	rs1951082-T	0.43	5E-6				Perlegen [378332]	N
794	chr14	27406891	27406892	rs17111920	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q12	NR	rs17111920-?	NR	3E-6		2.4079	[NR]	Affymetrix [722112]	N
794	chr14	27492639	27492640	rs1245314	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	14q12	intergenic	rs1245314-?	NR	2E-6		1.119978	[1.068869-1.173531]	Illumina [at least 4756722] (imputed)	N
794	chr14	27492639	27492640	rs1245314	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	14q12	intergenic	rs1245314-?	NR	9E-7		1.121056	[1.071209-1.173223]	Illumina [at least 4756722] (imputed)	N
794	chr14	27519791	27519792	rs77192485	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs77192485-G	0.02091	3E-8	(S100A4)	0.07436	NR unit increase	Illumina [1671387] (imputed)	N
795	chr14	27611871	27611872	rs12894029	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q12	MIR4307HG	rs12894029-T	0.714498	4E-8		0.0122072	[0.0077-0.0167] unit increase	NR [16516521] (imputed)	N
796	chr14	27660858	27660859	rs1245465	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	14q12	NOVA1	rs1245465-?	NR	3E-9		1.046	[1.031-1.062]	Illumina [13763073] (imputed)	N
796	chr14	27679751	27679752	rs202927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q12		rs202927-?	NR	3E-8				NR [~ 8900000] (imputed)	N
796	chr14	27686204	27686205	rs202941	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	14q12	NOVA1	rs202941-T	0.6156	4E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
796	chr14	27732975	27732976	rs202970	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	14q12	NR	rs202970-?	NR	7E-9	(Calcineurin subunit B type 1)			Illumina [514227]	N
796	chr14	27753538	27753539	rs75870332	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	14q12	Intergenic	rs75870332-A		5E-6		1.51	[1.04-2.19]	Affymetrix, Illumina [NR] (imputed)	N
797	chr14	27800176	27800177	rs2877832	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	14q12	intergenic	rs2877832-?	NR	3E-6	(HOMA-IR)			Affymetrix [70897]	N
797	chr14	27800176	27800177	rs2877832	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes related insulin traits	Up to 982 individuals	NA	14q12	intergenic	rs2877832-?	NR	2E-6	(FI)			Affymetrix [70897]	N
797	chr14	27821398	27821399	rs17112580	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Cellular adhesion molecule (red blood cell fatty acid level interaction)	2,703 individuals	NA	14q12	CTD-3006G17.2, LOC728755	rs17112580-?	0.24883988	4E-8	(OA)	0.5738272	[0.37-0.78] unit decrease	Affymetrix [2500000] (imputed)	N
800	chr14	28206649	28206650	rs115962808	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	14q12	NR	rs115962808-C	NR	6E-6		0.2132	[0.12-0.31] SD units increase	NR [10700000] (imputed)	N
800	chr14	28275763	28275764	rs111668083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs111668083-G	0.937	5E-6	(AA)	0.036	unit increase	Illumina [NR] (imputed)	N
800	chr14	28282556	28282557	rs10138911	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q12	FOXG1	rs10138911-T	0.4539	4E-8		0.013086808	[0.0084-0.0177] unit decrease	Affymetrix [11515109] (imputed)	N
800	chr14	28291916	28291917	rs10130576	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q12	NR	rs10130576-A	0.369	1E-10		0.00740195	[0.0052-0.0096] unit increase	NR [9732723] (imputed)	N
801	chr14	28314926	28314927	rs8015916	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q12	intergenic	rs8015916-C	0.221890456613271	3E-6	(G_Desulfovibrio_RNT)	0.212047	[0.12-0.3] unit decrease	Illumina [7711310] (imputed)	N
801	chr14	28346501	28346502	rs12878369	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q12	NR	rs12878369-A	0.414762	2E-11	(Conditioned on chr14:29316842)	0.017437266	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
801	chr14	28353130	28353131	rs12147172	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		14q12	NR	rs12147172-A	NR	7E-6	(conditioned on rs1426654)	0.436113	[0.25-0.63] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
801	chr14	28363903	28363904	rs61972815	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q12		rs61972815-C	0.665	1E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
802	chr14	28497570	28497571	rs2807820	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	14q12	LOC728755, LINC00645	rs2807820-?	NR	7E-6		1.9607843		Illumina [6778521] (imputed)	N
802	chr14	28538990	28538991	rs116590076	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs116590076-C	0.999	3E-6	(AA)	0.285	unit increase	Illumina [NR] (imputed)	N
802	chr14	28543475	28543476	rs190971703	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs190971703-T	0.999	3E-6	(AA)	0.285	unit increase	Illumina [NR] (imputed)	N
803	chr14	28586847	28586848	rs115034739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs115034739-G	0.999	2E-6	(AA)	0.285	unit increase	Illumina [NR] (imputed)	N
803	chr14	28591882	28591883	rs74492808	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs74492808-G	0.999	2E-6	(AA)	0.285	unit increase	Illumina [NR] (imputed)	N
803	chr14	28598026	28598027	rs114791918	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs114791918-A	0.999	2E-6	(AA)	0.284	unit increase	Illumina [NR] (imputed)	N
803	chr14	28601043	28601044	rs11844859	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q12	NR	rs11844859-?	NR	2E-6				Affymetrix [NR]	N
803	chr14	28604707	28604708	rs8020589	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q12	NR	rs8020589-?	NR	5E-6				Affymetrix [NR]	N
803	chr14	28605685	28605686	rs78242550	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs78242550-A	0.999	2E-6	(AA)	0.284	unit increase	Illumina [NR] (imputed)	N
803	chr14	28614387	28614388	rs116335274	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs116335274-G	0.999	3E-6	(AA)	0.286	unit increase	Illumina [NR] (imputed)	N
803	chr14	28651070	28651071	rs138828109	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	14q12	LINC00645	rs138828109-T	0.0318	1E-6		0.0228	[0.014-0.032] unit increase	Affymetrix [~ 7740000] (imputed)	N
803	chr14	28669855	28669856	rs532278511	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Hip circumference	14,126 African ancestry individuals	NA	14q12		rs532278511-A	1	3E-9		1.23	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
803	chr14	28681215	28681216	rs10131751	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	14q12	NR	rs10131751-A	0.05641	9E-7		2.495	[1.711-3.637]	Illumina [274400]	N
804	chr14	28728110	28728111	rs6576132	24825563	McDonald ML	2014-05-13	Am J Respir Cell Mol Biol	Common genetic variants associated with resting oxygenation in chronic obstructive pulmonary disease.	Resting oxygen saturation in chronic osbtructive pulmonary disease (pulse oxymetry)	820 African American cases	4,568 European ancestry cases	14q12	FOXG1	rs6576132-A	0.434	5E-8	(AA)	0.004	[0.003-0.005] unit increase	Illumina [6160662] (imputed)	N
804	chr14	28744736	28744737	rs11160943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs11160943-A	0.1895	5E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
804	chr14	28799166	28799167	rs186228570	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	14q12	CTD-2591A6.2	rs186228570-A	0.9916	7E-6		0.286	[0.16-0.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
804	chr14	28802050	28802051	rs17113878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q12	Intergenic	rs17113878-G	0.7994	3E-11		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
804	chr14	28803551	28803552	rs17113882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs17113882-T	0.8007	8E-11	(MTAG)	0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
806	chr14	29021927	29021928	rs7493138	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	14q12	FOXG1	rs7493138-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
807	chr14	29116694	29116695	rs12587311	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	14q12	FOXG1	rs12587311-T	NR	5E-7		0.01	[NR] % decrease	Affymetrix, Illumina [NR]	N
807	chr14	29117255	29117256	rs8011850	33967749	Ooi BNS	2021-04-22	Front Pharmacol	Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia.	Atorvastatin-induced myalgia	14 Chinese ancestry cases, 74 Chinese ancestry controls, 12 Indian ancestry cases, 45 Indian ancestry controls, 4 Malay ancestry cases, 34 Malay ancestry controls	NA			rs8011850-?	NR	7E-6		9.648	[3.593-25.91]	Illumina [4554532]	N
807	chr14	29132876	29132877	rs1956388	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	14q12	intergenic	rs1956388-A	NR	2E-6	(Analysis II)			Illumina [313720]	N
807	chr14	29178685	29178686	rs77789294	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q12		rs77789294-C	0.09612	5E-8		0.2186	[0.14-0.3] unit increase	Illumina [18030777] (imputed)	N
807	chr14	29213395	29213396	rs4981676	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	14q12	LOC728755, FOXG1	rs4981676-G	0.11	5E-6	(EA)	2.17	[1.55-3.04]	Illumina [up to 547389]	N
807	chr14	29218472	29218473	rs4983329	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	14q12	FOXG1	rs4983329-A		6E-16		0.0069	[0.0051-0.0087] unit increase	Affymetrix [13304133] (imputed)	N
807	chr14	29220086	29220087	rs7154769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q12	Intergenic	rs7154769-A	0.2623	3E-11	(MTAG)	0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
807	chr14	29220086	29220087	rs7154769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q12	Intergenic	rs7154769-G	0.7377	3E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
807	chr14	29226193	29226194	rs1955454	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q12		rs1955454-T	0.41	2E-50		14.94	z score increase	Affymetrix [9061022] (imputed)	N
807	chr14	29226193	29226194	rs1955454	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q12		rs1955454-T	0.41	1E-20		9.34	z score increase	Affymetrix [9061022] (imputed)	N
807	chr14	29226193	29226194	rs1955454	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q12	NR	rs1955454-T	0.4333	1E-17				NR [9056863] (imputed)	N
807	chr14	29228426	29228427	rs35342371	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q12	NR	rs35342371-A	0.2946	3E-9	(Pericalcarine)	6.7358747	[4.51-8.96] unit decrease	Affymetrix, Illumina [NR]	N
808	chr14	29235536	29235537	rs12888467	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs12888467-G	0.5	1E-23		10.05	z score increase	Affymetrix [9061022] (imputed)	N
808	chr14	29235536	29235537	rs12888467	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs12888467-G	0.4739	1E-17				NR [9056863] (imputed)	N
808	chr14	29235536	29235537	rs12888467	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q12		rs12888467-?	NR	9E-12				NR [9705931] (imputed)	N
808	chr14	29249348	29249349	rs2038256	20802204	Baranzini SE	2010-09-01	Brain	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	14q12	FOXG1B	rs2038256-?	NR	2E-6				Illumina [~ 500000]	N
808	chr14	29272895	29272896	rs10459584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs10459584-A	0.324	3E-10	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
808	chr14	29306624	29306625	rs71436368	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02327	rs71436368-?	NR	3E-8		0.894575	[NR] unit decrease	Affymetrix [NR] (imputed)	N
808	chr14	29306624	29306625	rs71436368	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02327	rs71436368-?	NR	3E-11	(male)	2.2079	[NR] unit decrease	Affymetrix [NR] (imputed)	N
808	chr14	29316841	29316842	rs2145451	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q12	NR	rs2145451-C	0.193	5E-10		0.020046158	[0.014-0.026] unit decrease	NR [~ 10000000] (imputed)	N
808	chr14	29349598	29349599	rs1956589	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q12	NR	rs1956589-T	0.192	1E-11		0.00936749	[0.0066-0.0121] unit decrease	NR [9732723] (imputed)	N
809	chr14	29466076	29466077	rs138677612	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q12	intergenic	rs138677612-C	NR	5E-6		0.8330985	[0.43-1.23] unit decrease	Illumina [> 6200000] (imputed)	N
809	chr14	29469372	29469373	rs10148671	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q12		rs10148671-T	0.347	2E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
809	chr14	29469372	29469373	rs10148671	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	14q12		rs10148671-?	NR	6E-9		0.0175	NR unit increase	NR [4484088] (imputed)	N
809	chr14	29469372	29469373	rs10148671	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q12	LOC10050600	rs10148671-C	NR	3E-7		1.0526316	[1.03-1.07]	Illumina [6627481] (imputed)	N
809	chr14	29469372	29469373	rs10148671	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q12	LINC01551	rs10148671-C	NR	4E-8		1.0559661	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
809	chr14	29469372	29469373	rs10148671	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q12	NR	rs10148671-C	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
809	chr14	29473658	29473659	rs75365967	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q12	NR	rs75365967-?	NR	8E-9		1.0550637	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
809	chr14	29487468	29487469	rs117674943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q12	Intergenic	rs117674943-G	0.8894	4E-10		0.0195	[0.013-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
809	chr14	29487667	29487668	rs11844846	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	14q12		rs11844846-?	NR	4E-8		0.0188	NR unit increase	NR [4428082] (imputed)	N
809	chr14	29487667	29487668	rs11844846	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	14q12	FOXG1	rs11844846-A	0.3459	2E-8		0.012888573	[0.0084-0.0174] unit decrease	Affymetrix [11514654] (imputed)	N
809	chr14	29489229	29489230	rs34882112	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC02326	rs34882112-?	NR	4E-11	(male)	2.04545	[NR] unit decrease	Affymetrix [NR] (imputed)	N
809	chr14	29490299	29490300	rs12886628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	14q12		rs12886628-?	NR	8E-9				NR [~ 8900000] (imputed)	N
810	chr14	29500105	29500106	rs7141236	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	14q12	C14orf23	rs7141236-C	0.187	4E-9		0.0172	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
810	chr14	29555510	29555511	rs192035884	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	14q12	NR	rs192035884-T		3E-7		0.8632	[0.53-1.2] SD units decrease	NR [10700000] (imputed)	N
810	chr14	29563935	29563936	rs1951536	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs1951536-?	NR	4E-7		5.064	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
810	chr14	29569236	29569237	rs1998358	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	ENSG00000258028	rs1998358-A	NR	4E-10		0.025984779	[0.018-0.034] unit increase	Affymetrix [NR]	N
810	chr14	29569259	29569260	rs12586987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs12586987-T	0.1982	4E-16	(MTAG)	0.0168	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
810	chr14	29579557	29579558	rs35091253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q12		rs35091253-?	NR	8E-14				NR [~ 8900000] (imputed)	N
810	chr14	29599986	29599987	rs115146346	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	14q12	NR	rs115146346-?	NR	3E-6		0.4774	[0.28-0.68] unit decrease	Illumina [at least 560000] (imputed)	N
810	chr14	29600358	29600359	rs176217	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs176217-T	NR	6E-11		6.553	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
810	chr14	29600505	29600506	rs176218	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	14q12	NR	rs176218-G	0.191849	2E-8		0.050145738	[0.033-0.068] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
810	chr14	29600505	29600506	rs176218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs176218-T	0.1958	1E-29		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
810	chr14	29600505	29600506	rs176218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs176218-T	0.1958	1E-30	(MTAG)	0.019	[0.016-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
810	chr14	29600505	29600506	rs176218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q12	Intergenic	rs176218-T	0.1919	4E-11	(MTAG)	0.0192	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
811	chr14	29628114	29628115	rs8016028	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA		AL133166.1	rs8016028-T	0.8107	2E-10		0.9730226	[NR]	Illumina [12493444] (imputed)	N
811	chr14	29629455	29629456	rs10483349	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	14q12		rs10483349-A	0.8302	1E-8		42.50047	z score increase	NR [6814003]	N
811	chr14	29629455	29629456	rs10483349	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q12	RP11-562L8.1	rs10483349-G	0.1797	2E-10		0.016772145	[0.012-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
811	chr14	29629455	29629456	rs10483349	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	ENSG00000257522	rs10483349-A	NR	1E-9		0.023095235	[0.016-0.031] unit decrease	Affymetrix [NR]	N
811	chr14	29629455	29629456	rs10483349	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	14q12	NR	rs10483349-A	0.809	7E-10		0.01742168	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
811	chr14	29638937	29638938	rs12897763	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q12	ENSG00000257522	rs12897763-?	NR	3E-9		0.015836988	[0.011-0.021] unit increase	NR [7306098]	N
811	chr14	29650364	29650365	rs9788566	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	14q12	ENSG00000257522	rs9788566-?	NR	1E-8		5.676	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
811	chr14	29650364	29650365	rs9788566	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	14q12	ENSG00000257522	rs9788566-?	NR	7E-6		4.484	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
811	chr14	29662736	29662737	rs72671456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs72671456-A	0.1374	1E-17		0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
811	chr14	29663280	29663281	rs17114593	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		FOXG1	rs17114593-?	NR	9E-6	(glycodeoxycholate)	0.18482846	[0.1-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
811	chr14	29681137	29681138	rs9788550	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q12		rs9788550-G	0.75	3E-11				NR [NR] (imputed)	N
811	chr14	29681137	29681138	rs9788550	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q12		rs9788550-G	0.75	9E-20		0.015	% increase	NR [NR] (imputed)	N
811	chr14	29681137	29681138	rs9788550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	14q12	NR	rs9788550-C	NR	4E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
811	chr14	29681137	29681138	rs9788550	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q12	PRKD1	rs9788550-G	0.75258	6E-18		0.0137871	[0.011-0.017] unit increase	Affymetrix [12370749]	N
811	chr14	29681137	29681138	rs9788550	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs9788550-?	NR	5E-20				Affymetrix [~ 8270000] (imputed)	N
811	chr14	29681137	29681138	rs9788550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q12		rs9788550-?	NR	2E-20				NR [~ 8900000] (imputed)	N
811	chr14	29681293	29681294	rs1569979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q12	NA	rs1569979-A	0.7737	3E-24		0.0204	[0.016-0.024] unit increase	NR [~ 27400000] (imputed)	N
811	chr14	29683173	29683177	rs144355275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q12		rs144355275-A	NR	2E-15		0.0196	[0.015-0.025] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
811	chr14	29683173	29683177	rs144355275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q12		rs144355275-A	NR	8E-14		0.0207	[0.015-0.026] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
811	chr14	29684520	29684521	rs1569980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	PRKD1, MIR548AI	rs1569980-C	0.7524	5E-6	(women)	0.03	[0.017-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29684520	29684521	rs1569980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs1569980-?	NR	1E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29684520	29684521	rs1569980	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs1569980-C	0.7503	2E-8	(women)	0.0335	[0.022-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29685327	29685328	rs974471	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	ENSG00000257522	rs974471-A	NR	2E-8		0.0193698	[0.013-0.026] unit decrease	Affymetrix [NR]	N
811	chr14	29685327	29685328	rs974471	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	14q12	ENSG00000257522	rs974471-?	NR	2E-8		5.658	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
811	chr14	29685327	29685328	rs974471	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	PRKD1, MIR548AI	rs974471-A	0.756	4E-6	(EA,women)	0.0314	[0.018-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29685327	29685328	rs974471	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs974471-?	NR	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29685327	29685328	rs974471	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs974471-A	0.7532	3E-8	(EA, women)	0.035	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29690512	29690513	rs2180454	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q12	NR	rs2180454-T	0.2277	1E-10		0.019021263	[0.013-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
811	chr14	29694033	29694034	rs17641673	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	ENSG00000257522	rs17641673-A	NR	2E-8		0.027391637	[0.018-0.037] unit increase	Affymetrix [NR]	N
811	chr14	29697708	29697709	rs72671483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs72671483-A	0.1145	2E-11	(MTAG)	0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr14	29702589	29702590	rs12887636	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q12		rs12887636-G	0.34	1E-8		5.69	z score increase	Affymetrix [9061022] (imputed)	N
811	chr14	29702589	29702590	rs12887636	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs12887636-G	0.34	6E-16		8.1	z score increase	Affymetrix [9061022] (imputed)	N
811	chr14	29702589	29702590	rs12887636	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q12	NR	rs12887636-G	0.3433	9E-9				NR [9056863] (imputed)	N
811	chr14	29702589	29702590	rs12887636	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs12887636-G	0.3433	1E-17				NR [9056863] (imputed)	N
811	chr14	29702589	29702590	rs12887636	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q12	NR	rs12887636-?		1E-8				NR [7428630] (imputed)	N
811	chr14	29708119	29708120	rs181479584	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	14q12	NR	rs181479584-G		3E-7		0.8528	[0.52-1.18] SD units increase	NR [10700000] (imputed)	N
811	chr14	29710452	29710453	rs117787553	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs117787553-?	NR	3E-7		5.149	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
811	chr14	29710452	29710453	rs117787553	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	ENSG00000257522	rs117787553-A	NR	2E-8		0.03870541	[0.025-0.052] unit increase	Affymetrix [NR]	N
811	chr14	29715514	29715515	rs10145644	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q12	PRKD1	rs10145644-A	0.36	3E-8		0.0068	[0.0044-0.0092] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
811	chr14	29718895	29718896	rs10132779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q12	Intergenic	rs10132779-A	0.8115	2E-10	(MTAG)	0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr14	29718895	29718896	rs10132779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q12	Intergenic	rs10132779-A	0.8115	2E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
811	chr14	29721043	29721044	rs10149986	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	14q12	PRKD1, FOXG1	rs10149986-G		1E-14		0.0086	[0.0064-0.0108] unit increase	Affymetrix [13304133] (imputed)	N
811	chr14	29729002	29729003	rs2877960	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q12	NR	rs2877960-?	NR	6E-6		0.0078933	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
811	chr14	29736837	29736838	rs12885454	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q12	NA	rs12885454-A	0.3559	5E-26		0.018	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q12	NA	rs12885454-A	0.3559	5E-26		0.018	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q12	NR	rs12885454-C	NR	4E-14		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	PRKD1, MIR548AI	rs12885454-C	0.6404000000000001	9E-6	(EA)	0.0191	[0.011-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs12885454-?	NR	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs12885454-?	NR	1E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs12885454-C	0.6468	1E-8		0.0211	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	PRKD1, MIR548AI	rs12885454-C	0.6404000000000001	2E-8	(EA)	0.0219	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q12	PRKD1	rs12885454-A	0.3494	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q12	PRKD1	rs12885454-A	0.3494	1E-6		0.0165	[0.0098-0.0232] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q12	NR	rs12885454-A	0.359525724658445	5E-14		0.021277636	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
811	chr14	29736837	29736838	rs12885454	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs12885454-C	0.646	9E-11		0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
811	chr14	29736837	29736838	rs12885454	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs12885454-C	0.642	2E-10	(EA)	0.021	[0.014-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
811	chr14	29736837	29736838	rs12885454	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs12885454-C	0.639	3E-8	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
811	chr14	29736837	29736838	rs12885454	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	PRKD1	rs12885454-A	0.3574	3E-8	(EA)	0.0197	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
811	chr14	29736837	29736838	rs12885454	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q12	PRKD1	rs12885454-A	0.3574	1E-6	(EA, women)	0.0221	[0.013-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
811	chr14	29737465	29737466	rs11624548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs11624548-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
811	chr14	29742408	29742409	rs117896175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs117896175-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
811	chr14	29742408	29742409	rs117896175	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs117896175-A	0.9678	4E-8	(MTAG)	0.0207	[0.013-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
811	chr14	29744531	29744532	rs8005994	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q12	NR	rs8005994-G	0.3455	5E-8		0.0265	[0.017-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
811	chr14	29750243	29750244	rs7146955	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q12	RP11-562L8.1	rs7146955-G	0.59	7E-12		0.44	[0.32-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
812	chr14	29753714	29753715	rs74549401	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	14q12	intergenic	rs74549401-?	NR	5E-14		0.00796329	[0.0029-0.0131] unit increase	Affymetrix [25921788] (imputed)	N
812	chr14	29753714	29753715	rs74549401	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	14q12	intergenic	rs74549401-?	NR	5E-14		0.0194769	[0.014-0.025] unit increase	Affymetrix [25921788] (imputed)	N
812	chr14	29754595	29754596	rs28768443	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	14q12	NR	rs28768443-?	0.81	6E-7		1.1494253	[1.09-1.22]	Illumina [~ 1113287] (imputed)	N
812	chr14	29758166	29758166	rs761393131	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	14q12	intergenic	rs761393131-?	NR	1E-8		0.0140988	[0.0092-0.019] unit increase	Affymetrix [25921788] (imputed)	N
812	chr14	29772184	29772185	rs10162525	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q12	RP11-562L8.1	rs10162525-T	0.5934	2E-10		0.4309	[0.3-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
812	chr14	29781177	29781178	rs1957111	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	14q12	PRKD1	rs1957111-C	0.947639	1E-11	(EA)	0.018951	[0.013-0.024] unit decrease	Affymetrix [~ 8800000] (imputed)	N
812	chr14	29781177	29781178	rs1957111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q12		rs1957111-?	NR	1E-12				NR [~ 8900000] (imputed)	N
812	chr14	29802177	29802178	rs12880187	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	14q12	LINC01551, PRKD1	rs12880187-A	0.621	1E-6	(female)	0.1136	[0.067-0.16] unit increase	NR [NR] (imputed)	N
812	chr14	29807594	29807595	rs75639464	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs75639464-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
812	chr14	29816154	29816155	rs10483350	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	14q12	NR	rs10483350-G	NR	6E-8		0.858	unit increase	Affymetrix [14661600] (imputed)	N
812	chr14	29822263	29822264	rs72673540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs72673540-T	0.0919	2E-12	(conditional-joint)	0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
812	chr14	29822420	29822421	rs8019612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs8019612-A	0.3596	3E-11	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
812	chr14	29822420	29822421	rs8019612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q12	Intergenic	rs8019612-A	0.3683	5E-8	(MTAG)	0.013	[0.0083-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
812	chr14	29840612	29840613	rs1951289	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	NR	rs1951289-?	NR	8E-6		4.473	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
812	chr14	29882862	29882863	rs12885099	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs12885099-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
813	chr14	29886861	29886862	rs186977274	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	14q12	NR	rs186977274-C		3E-6		0.7274	[0.42-1.04] SD units increase	NR [10700000] (imputed)	N
813	chr14	29907102	29907103	rs146652416	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	14q12	NR	rs146652416-G	0.03	4E-8		0.62	[0.4-0.84] unit increase	Affymetrix [9231066] (imputed)	N
813	chr14	29907102	29907103	rs146652416	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	14q12	NR	rs146652416-G	0.03	4E-8		0.62	[0.4-0.84] unit increase	Affymetrix [9231066] (imputed)	N
813	chr14	29969981	29969982	rs77989445	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	14q12	PRKD1, MIR548AI	rs77989445-G	0.1436	9E-7		17.692		Affymetrix [757439]	N
813	chr14	29970371	29970372	rs1887348	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	14q12	RNU11-5P	rs1887348-C	0.5878	7E-6		0.0371	[0.021-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
813	chr14	30000404	30000405	rs1191551	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q12	NR	rs1191551-?	NR	3E-8		1.07251	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
813	chr14	30000404	30000405	rs1191551	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q12	Intergenic	rs1191551-T	NR	4E-8	(EA)	1.0743	[1.05-1.1]	Illumina [6627481] (imputed)	N
813	chr14	30000404	30000405	rs1191551	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	14q12	MIR548AI, PRKD1	rs1191551-?	NR	4E-10		1.076	[1.05-1.1]	Illumina [8000000] (imputed)	N
813	chr14	30000404	30000405	rs1191551	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q12	MIR548AI	rs1191551-T	NR	2E-8		1.074	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
813	chr14	30000404	30000405	rs1191551	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q12	NR	rs1191551-T	NR	8E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
814	chr14	30028490	30028491	rs12436091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q12	NR	rs12436091-C	0.760005541309597	8E-10		0.0066069886	[0.0045-0.0087] unit increase	NR [NR]	N
814	chr14	30028490	30028491	rs12436091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q12	NR	rs12436091-C	0.760005541309597	1E-9		0.008019313	[0.0054-0.0106] unit increase	NR [NR]	N
814	chr14	30028490	30028491	rs12436091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q12	NR	rs12436091-C	0.760005541309597	1E-9		0.0104343705	[0.0071-0.0138] unit increase	NR [NR]	N
814	chr14	30028490	30028491	rs12436091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	14q12	NR	rs12436091-C	0.760005541309597	3E-9		0.008510013	[0.0057-0.0113] unit increase	NR [NR]	N
814	chr14	30028490	30028491	rs12436091	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q12	NR	rs12436091-C	0.760005541309597	1E-9		0.0066675	[0.0045-0.0088] unit increase	NR [NR]	N
814	chr14	30029321	30029322	rs138940224	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q12	PRKD1	rs138940224-C	NR	9E-6		0.24774091	[0.13-0.36] unit decrease	Illumina [> 6200000] (imputed)	N
814	chr14	30041272	30041273	rs78788422	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	14q12	MIR548AI	rs78788422-A	0.014	7E-6		0.32	[0.18-0.46] unit increase	Affymetrix [7435577] (imputed)	N
814	chr14	30070658	30070659	rs3783300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs3783300-A	0.3844	1E-9	(conditional-joint)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
814	chr14	30071737	30071738	rs2333604	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	PRKD1	rs2333604-A	NR	2E-10		6.372	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
814	chr14	30072381	30072382	rs1108732	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q12	NR	rs1108732-C	0.399602	5E-8		0.034916636	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
814	chr14	30072381	30072382	rs1108732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q12	Intergenic	rs1108732-T	0.3842	4E-8		0.0161	[0.01-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
814	chr14	30074686	30074687	rs971681	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs971681-T	NR	2E-9		5.966	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
814	chr14	30074686	30074687	rs971681	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	PRKD1	rs971681-T	NR	4E-9		0.017618373	[0.012-0.023] unit decrease	Affymetrix [NR]	N
814	chr14	30078919	30078920	rs2333607	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q12	PRKD1	rs2333607-A	0.380725	1E-8		0.00817046	[0.0054-0.011] unit increase	Affymetrix [12370749]	N
814	chr14	30086480	30086481	rs12433335	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q12	NR	rs12433335-C	0.568	2E-8		0.0213	[0.014-0.029] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
814	chr14	30086480	30086481	rs12433335	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs12433335-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
814	chr14	30088137	30088138	rs12431702	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q12	NR	rs12431702-C	0.380447777481086	8E-6	(IGP17)	0.1459	[0.082-0.21] unit increase	Illumina [~ 2500000] (imputed)	N
814	chr14	30101640	30101641	rs1191600	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q12	NR	rs1191600-A	0.590323085642628	2E-8		0.005256685	[0.0034-0.0071] unit decrease	NR [NR]	N
814	chr14	30101640	30101641	rs1191600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q12		rs1191600-?	NR	1E-8				NR [~ 8900000] (imputed)	N
814	chr14	30114246	30114247	rs73255547	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs73255547-T	0.01568	5E-10	(ACADS)	0.8364	NR unit increase	Illumina [1671387] (imputed)	N
814	chr14	30122408	30122409	rs17115145	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q12	PRKD1	rs17115145-T	0.397	4E-10		0.1569	[0.11-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
815	chr14	30158472	30158473	rs60680162	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs60680162-?	NR	3E-8				NR [2625067]	N
815	chr14	30174077	30174078	rs28645341	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	PRKD1	rs28645341-T	NR	8E-10		6.149	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
815	chr14	30187404	30187405	rs10149407	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	14q12	NR	rs10149407-T	0.3151	2E-8		0.06613539	[0.043-0.089] unit increase	NR [NR]	N
815	chr14	30187404	30187405	rs10149407	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	14q12	NR	rs10149407-?		4E-9				NR [8377093]	N
815	chr14	30187404	30187405	rs10149407	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	14q12	NR	rs10149407-?		2E-8				NR [520857]	N
815	chr14	30190315	30190316	rs2068012	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	14q12	NR	rs2068012-?		3E-8				NR [8377093]	N
815	chr14	30190315	30190316	rs2068012	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q12	PRKD1	rs2068012-C	0.2276	1E-8		0.013486382	[0.0088-0.0181] unit decrease	Affymetrix [up to 18485882] (imputed)	N
815	chr14	30190315	30190316	rs2068012	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	14q12	NR	rs2068012-?	NR	3E-7				Illumina [up to 5582932] (imputed)	N
815	chr14	30190315	30190316	rs2068012	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q12	PRKD1	rs2068012-C	NR	6E-8	(EA)	1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
815	chr14	30190315	30190316	rs2068012	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	PRKD1	rs2068012-T	NR	7E-9		0.019843413	[0.013-0.027] unit increase	Affymetrix [NR]	N
815	chr14	30190315	30190316	rs2068012	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q12	NR	rs2068012-C	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
815	chr14	30190315	30190316	rs2068012	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	14q12	PRKD1	rs2068012-C	0.229	1E-8		1.0718113	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
815	chr14	30208629	30208630	rs1959440	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q12	PRKD1	rs1959440-?	NR	4E-10		0.012606909	[0.0086-0.0166] unit decrease	NR [7306098]	N
815	chr14	30268870	30268871	rs36006259	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q12	PRKD1	rs36006259-T	0.157665	2E-8		5.58	z score decrease	NR [10847151] (imputed)	N
816	chr14	30313767	30313768	rs71415914	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs71415914-T	0.02091	3E-10	(CNN2)	0.0153	NR unit increase	Illumina [1671387] (imputed)	N
816	chr14	30313767	30313768	rs71415914	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs71415914-T	0.02091	2E-8	(FLNA)	0.8206	NR unit increase	Illumina [1671387] (imputed)	N
816	chr14	30313767	30313768	rs71415914	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs71415914-T	0.02091	2E-8	(CORO1A)	0.06967	NR unit increase	Illumina [1671387] (imputed)	N
816	chr14	30314077	30314078	rs11847351	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	14q12	PRKD1	rs11847351-A	0.3011	5E-8		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
816	chr14	30317501	30317503	rs554891028	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q12		rs554891028-A	0.0125	2E-8		0.7014	[0.46-0.94] unit increase	Illumina [18132558] (imputed)	N
816	chr14	30334526	30334527	rs45525431	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q12	PRKD1	rs45525431-A	NR	6E-6		5.9879413	[3.44-8.53] unit decrease	Illumina [> 6200000] (imputed)	N
816	chr14	30346258	30346259	rs2095309	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	14q12	NR	rs2095309-G		8E-6		0.1191	[0.067-0.171] SD units decrease	NR [10700000] (imputed)	N
816	chr14	30383155	30383156	rs8012958	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	14q12	NR	rs8012958-?	NR	3E-6		2056.3232	NR unit decrease	Illumina [2379855]	N
817	chr14	30430682	30430683	rs61980001	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs61980001-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
817	chr14	30430682	30430683	rs61980001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q12		rs61980001-?	NR	1E-11				NR [~ 8900000] (imputed)	N
817	chr14	30443870	30443871	rs225917	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	14q12	PRKD1	rs225917-T	NR	4E-6		0.084300466	[0.048-0.12] unit decrease	Affymetrix [9576485] (imputed)	N
817	chr14	30459450	30459451	rs225902	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	14q12	NR	rs225902-A	0.8458	1E-7		0.4724	[0.2-0.75]	Illumina [10000612] (imputed)	N
817	chr14	30464715	30464716	rs61980008	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	14q12	CTD-2251F13.1, PRKD1	rs61980008-A	0.0423	2E-6		0.0778	[0.046-0.11] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr14	30466465	30466466	rs10151686	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	14q12	PRKD1	rs10151686-A	0.04	7E-7		0.096	[0.059-0.133] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
817	chr14	30469703	30469704	rs55906749	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	14q12	CTD-2251F13.1, PRKD1	rs55906749-T	0.958	8E-8		0.1097	[0.07-0.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr14	30484721	30484722	rs8016859	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q12	NA	rs8016859-C	0.0377	7E-16		0.0344	[0.026-0.043] unit increase	NR [~ 27400000] (imputed)	N
817	chr14	30484721	30484722	rs8016859	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q12	NA	rs8016859-C	0.0377	7E-16		0.0344	[0.026-0.043] unit increase	NR [~ 27400000] (imputed)	N
817	chr14	30489622	30489623	rs718545	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q12	PRKD1	rs718545-G	0.139	9E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
817	chr14	30491806	30491807	rs61978655	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q12	PRKD1	rs61978655-G	0.961364	1E-20		0.033933	[0.027-0.041] unit decrease	Affymetrix [12370749]	N
817	chr14	30514334	30514335	rs10136330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q12		rs10136330-?	NR	4E-12				NR [~ 8900000] (imputed)	N
817	chr14	30515111	30515112	rs11847697	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q12	NR	rs11847697-C	NR	9E-11		0.042	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
817	chr14	30515111	30515112	rs11847697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	14q12	CTD-2251F13.1, PRKD1	rs11847697-T	0.0468	2E-8		0.0871	[0.057-0.118] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr14	30515111	30515112	rs11847697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q12	CTD-2251F13.1, PRKD1	rs11847697-T	0.047	7E-7		0.0809	[0.049-0.113] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr14	30515111	30515112	rs11847697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q12	CTD-2251F13.1, PRKD1	rs11847697-T	0.047	7E-7		0.0809	[0.049-0.113] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr14	30515111	30515112	rs11847697	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q12	NR	rs11847697-T	0.0419583872651932	2E-10		0.046948265	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
817	chr14	30515111	30515112	rs11847697	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs11847697-T	0.098	3E-7		0.037	[0.023-0.052] kg/m2 increase	Affymetrix, Illumina [2550021]	N
817	chr14	30515111	30515112	rs11847697	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs11847697-T	0.043	6E-7	(EA, women)	0.053	[0.032-0.074] kg/m2 increase	Affymetrix, Illumina [2550021]	N
817	chr14	30515111	30515112	rs11847697	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	PRKD1	rs11847697-T	0.042	4E-9	(EA)	0.049	[0.033-0.066] kg/m2 increase	Affymetrix, Illumina [2550021]	N
817	chr14	30515111	30515112	rs11847697	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	14q12	PRKD1	rs11847697-T	0.04	2E-6		0.107	[0.062-0.152] unit increase	Affymetrix, Illumina [557887] (imputed)	N
817	chr14	30515111	30515112	rs11847697	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	14q12	PRKD1	rs11847697-T	0.04	6E-11		0.17	[0.07-0.27] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
817	chr14	30535725	30535726	rs9707389	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	14q12	PRKD1	rs9707389-T	NR	1E-6		0.332	[0.2-0.47] unit increase	Illumina [6319684] (imputed)	N
818	chr14	30541678	30541679	rs72662233	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	14q12	PRKD1, G2E3	rs72662233-G	0.34	7E-7		0.0761	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
818	chr14	30548134	30548135	rs417054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q12		rs417054-?	NR	3E-10				NR [~ 8900000] (imputed)	N
818	chr14	30549847	30549848	rs225847	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q12	NR	rs225847-T	0.210498	2E-24		0.038781	[0.031-0.046] unit increase	NR [19129689] (imputed)	N
818	chr14	30562925	30562926	rs72662240	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		14q12	NR	rs72662240-A	NR	1E-9		0.0491372	NR unit increase	NR [NR] (imputed)	N
818	chr14	30573152	30573153	rs225872	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q12	NR	rs225872-?	NR	6E-6	(AA)	23.61	[21.3-25.92]	Illumina [905956]	N
818	chr14	30594656	30594657	rs225848	22445761	Kurose K	2012-03-23	Psychiatry Res	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NA	14q12	RP11-269 C4.1	rs225848-G	0.028	1E-6		4.42	[2.12-9.26]	Affymetrix [186320]	N
818	chr14	30601501	30601502	rs10133323	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs10133323-G	0.2239	1E-8				NR [9056863] (imputed)	N
818	chr14	30606425	30606426	rs8019932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs8019932-T	0.6771	1E-13	(MTAG)	0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
818	chr14	30608326	30608327	rs7147566	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs7147566-T	0.2798	2E-11	(conditional-joint)	0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
818	chr14	30608537	30608538	rs7147473	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs7147473-A	0.6719	6E-12		0.0103	[0.0074-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
819	chr14	30727611	30727612	rs139881447	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q12	intergenic	rs139881447-A	0.975666	1E-9		0.0408184	[0.028-0.054] unit decrease	NR [16516521] (imputed)	N
819	chr14	30784414	30784415	rs58622005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs58622005-A	0.2794	3E-10	(MTAG)	0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
819	chr14	30784414	30784415	rs58622005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs58622005-A	0.2816	2E-11	(MTAG)	0.0099	[0.007-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
819	chr14	30785167	30785168	rs59348558	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q12	intergenic	rs59348558-C	NR	8E-7	(AA)			Illumina [up to 11995908] (imputed)	N
819	chr14	30785167	30785168	rs59348558	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q12	intergenic	rs59348558-C	NR	8E-7				Illumina [up to 11995908] (imputed)	N
819	chr14	30792117	30792118	rs72664305	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q12	Intergenic	rs72664305-G	0.7219	2E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
820	chr14	30840015	30840016	rs10131977	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	14q12	NR	rs10131977-C		9E-6		0.1208	[0.067-0.174] SD units increase	NR [10700000] (imputed)	N
820	chr14	30893511	30893512	rs7147298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q12	SCFD1	rs7147298-?	NR	8E-6	(LPC 20:3)	0.8271102	[0.46-1.19] unit increase	Affymetrix [at least 2500000] (imputed)	N
820	chr14	30916249	30916250	rs17096758	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs17096758-C	0.181	2E-8	(conditional-joint)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
821	chr14	31014159	31014160	rs229168	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q12	Intergenic	rs229168-C	0.7123	5E-11		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
821	chr14	31016551	31016552	rs7156431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q12	Intergenic	rs7156431-C	0.7125	7E-10	(MTAG)	0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
821	chr14	31030303	31030304	rs117309559	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	14q12		rs117309559-G	0.02219	6E-14		0.486264	[0.36-0.61] unit increase	Illumina [7506463] (imputed)	N
821	chr14	31040086	31040087	rs229190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q12		rs229190-C	NR	5E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
821	chr14	31045180	31045181	rs229194	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	14q12		rs229194-A	0.337	9E-15		0.091	[0.067-0.115] unit increase	Illumina [10461755] (imputed)	N
821	chr14	31045595	31045596	rs229195	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	14q12		rs229195-A	0.337	9E-15		0.091	[0.067-0.115] unit increase	Illumina [10461755] (imputed)	N
822	chr14	31078501	31078502	rs2045180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q12		rs2045180-?	NR	3E-12				NR [~ 8900000] (imputed)	N
822	chr14	31078573	31078574	rs12885353	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	14q12		rs12885353-C	NR	4E-8		1.55	[1.33-1.82]	Illumina [7591411] (imputed)	N
822	chr14	31097256	31097257	rs79704906	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q12	NR	rs79704906-G	0.07	3E-13	(Cochlin, COCH.7227.75.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
822	chr14	31147497	31147498	rs10139154	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	14q12	SCFD1	rs10139154-?	0.339	1E-7	(EA)	1.08	[1.05-1.11]	Illumina [10031630] (imputed)	N
822	chr14	31147497	31147498	rs10139154	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	14q12	SCFD1	rs10139154-?	0.31	3E-8		1.09	[1.06-1.12]	Illumina [8697640] (imputed)	N
823	chr14	31195869	31195870	rs10483364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q12	SCFD1	rs10483364-T	0.014127	6E-9		0.05492831	[0.036-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr14	31222142	31222143	rs79903896	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q12	RP11-159L20.2, SCFD1, UBE2CP1, COCH	rs79903896-C	NR	3E-6	(mid-sleep time)	0.6032	[0.35-0.86] unit decrease	Affymetrix [7141204] (imputed)	N
823	chr14	31224393	31224394	rs75281632	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL121852.1	rs75281632-?	NR	3E-10	(female)	1.54643	[NR] unit decrease	Affymetrix [NR] (imputed)	N
823	chr14	31237169	31237170	rs7149414	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-3 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	14q12	intergenic	rs7149414-A	0.133	2E-6		0.381	[0.22-0.54] unit increase	Illumina [621723]	N
823	chr14	31255026	31255027	rs77762911	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	14q12	NR	rs77762911-T	NR	2E-7		5.18	z score increase	NR [9015039] (imputed)	N
823	chr14	31314354	31314355	rs7159420	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COCH	5,367 Icelandic ancestry individuals	NA	14q12		rs7159420-G	0.1191	5E-69		0.512577	[0.46-0.57] unit increase	Illumina [7506463] (imputed)	N
824	chr14	31330412	31330413	rs34907608	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q12	COCH	rs34907608-A	0.119	1E-38	(Cochlin, COCH.7227.75.3)	0.48	[0.4-0.56] unit increase	Affymetrix [10572788] (imputed)	N
824	chr14	31339072	31339073	rs35561078	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q12	COCH	rs35561078-A	0.881875	2E-38	(COCH, 7227_75_3)	0.49449188	[0.42-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
824	chr14	31351675	31351676	rs7148651	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q12	NR	rs7148651-T	0.0122	3E-9	(EMILIN2)	0.1297	NR unit increase	Illumina [1671387] (imputed)	N
824	chr14	31362384	31362385	rs8022032	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q12		rs8022032-G	0.44	2E-17		8.5	z score increase	Affymetrix [9061022] (imputed)	N
824	chr14	31362384	31362385	rs8022032	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q12		rs8022032-G	0.44	1E-20		9.34	z score increase	Affymetrix [9061022] (imputed)	N
824	chr14	31362384	31362385	rs8022032	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q12	NR	rs8022032-G	0.3966	1E-17				NR [9056863] (imputed)	N
824	chr14	31362509	31362510	rs12897108	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q12	COCH	rs12897108-T	0.2644	2E-9		0.02523328	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr14	31368062	31368063	rs10047928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q12	NR	rs10047928-A	0.254702	3E-15		0.016808	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
824	chr14	31372321	31372323	rs34723659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q12		rs34723659-G	NR	3E-12		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
824	chr14	31372321	31372323	rs34723659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q12	STRN3	rs34723659-G	0.253166	2E-30		0.029664155	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
824	chr14	31375321	31375322	rs766146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs766146-T	0.452761	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
824	chr14	31376928	31376929	rs34284209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs34284209-G	0.743546	1E-36				Affymetrix, Illumina [17210439] (imputed)	N
824	chr14	31376928	31376929	rs34284209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q12	NR	rs34284209-G	0.737259	3E-40		0.029131	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
824	chr14	31381350	31381351	rs2273171	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q12		rs2273171-T	0.5255	1E-11		0.1408815	[0.097-0.184] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
824	chr14	31381350	31381351	rs2273171	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q12		rs2273171-T	0.5254	1E-8		0.07788441	[0.051-0.105] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
824	chr14	31381350	31381351	rs2273171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q12	STRN3	rs2273171-C	0.476577	6E-12		0.0154994475	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
824	chr14	31381350	31381351	rs2273171	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	14q12	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs2273171-?		2E-8				NR [7428630] (imputed)	N
824	chr14	31385143	31385144	rs67648672	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	14q12	NR	rs67648672-?		2E-12				NR [7428630] (imputed)	N
824	chr14	31385732	31385733	rs1967699	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q12	NR	rs1967699-A	0.4508	1E-17				NR [9056863] (imputed)	N
824	chr14	31386425	31386426	rs9322866	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q12		rs9322866-T	0.44	1E-41		13.53	z score increase	Affymetrix [9061022] (imputed)	N
824	chr14	31392605	31392606	rs7153028	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	14q12	NA	rs7153028-T		3E-9		0.0134224	[0.009-0.0179] unit decrease	Illumina [13288253] (imputed)	N
824	chr14	31393056	31393057	rs10138011	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 237)	19,670 European ancestry individuals	NA	14q12		rs10138011-?	NR	3E-9				NR [9705931] (imputed)	N
825	chr14	31492094	31492095	rs12886365	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q12	FIP1L1, CHIC2, AC110792.1	rs12886365-?		2E-10				NR [7428630] (imputed)	N
825	chr14	31496211	31496212	rs179744	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q12	COCH, STRN3, AP4S1	rs179744-?		1E-12				NR [7428630] (imputed)	N
825	chr14	31496211	31496212	rs179744	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	14q12	NR	rs179744-?		8E-9	(Hippocampus )			NR [8955960] (imputed)	N
825	chr14	31510336	31510337	rs72670321	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	14q12	NR	rs72670321-?		6E-9	(Hippocampus )			NR [8955960] (imputed)	N
825	chr14	31515115	31515116	rs74742132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q12	AP4S1	rs74742132-G	0.10077	1E-9		0.0206223	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr14	31531332	31531333	rs111721514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q12	NR	rs111721514-C	0.099478	2E-11		0.020511	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
825	chr14	31541622	31541623	rs4981087	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	14q12	NR	rs4981087-?		1E-9	(Hippocampus )			NR [8955960] (imputed)	N
825	chr14	31541909	31541910	rs138656258	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	14q12	AP4S1	rs138656258-G	0.0073	1E-8		0.05885686	[0.039-0.079] unit decrease	Affymetrix [up to 29454346] (imputed)	N
825	chr14	31546792	31546793	rs58320021	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	14q12	NR	rs58320021-?	NR	6E-6		1.735	[1.09-2.38] unit increase	Illumina [at least 560000] (imputed)	N
825	chr14	31552619	31552620	rs10483353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q12		rs10483353-?	NR	3E-8				NR [~ 8900000] (imputed)	N
825	chr14	31583511	31583512	rs61976859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q12	NR	rs61976859-T	0.0855646	2E-11				Affymetrix, Illumina [24246363] (imputed)	N
826	chr14	31601804	31601805	rs11626909	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	14q12		rs11626909-G	0.0298892	8E-6		0.06599055	[0.037-0.095] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
827	chr14	31719956	31719957	rs12434266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q12		rs12434266-G	NR	2E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
827	chr14	31725110	31725111	rs139262716	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q12	NR	rs139262716-G	0.982544	1E-8		0.0420476	[0.028-0.056] unit increase	Affymetrix [15000001]	N
827	chr14	31774323	31774324	rs61754158	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q12		rs61754158-T	0.0086	6E-9		0.69729924	[0.45-0.95] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
827	chr14	31774323	31774324	rs61754158	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q12		rs61754158-T	0.0086	5E-8		0.4954361	[0.32-0.67] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
827	chr14	31774323	31774324	rs61754158	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	14q12	HEATR5A	rs61754158-T	0.01	1E-8		0.055	[0.033-0.077] unit decrease	Illumina [~ 250000] (imputed)	N
827	chr14	31818568	31818569	rs142914081	34212547	An J	2021-07-01	Allergy Asthma Immunol Res	Genome-Wide Association Study of Korean Asthmatics: A Comparison With UK Asthmatics.	Adult asthma	1,386 Korean ancestry cases, 5,205 Korean ancestry controls	NA	14q12		rs142914081-A	0.05	2E-6		1.51	[1.27-1.78]	Affymetrix [4922160] (imputed)	N
828	chr14	31885950	31885951	rs10147938	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	14q12	HEATR5A	rs10147938-T	0.386551	4E-8		0.014516	[0.0093-0.0197] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
829	chr14	31993500	31993501	rs117308259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20- CD38- B cell %B cell	3,659 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q12		rs117308259-C	0.00664	2E-8		0.8348	[0.54-1.13] unit decrease	Illumina [18238368] (imputed)	N
829	chr14	32021437	32021438	rs1952896	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	14q12	NR	rs1952896-C	0.12	3E-6	(IFNAR2_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
829	chr14	32029381	32029382	rs28754845	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Obsessive compulsive disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	2,688 OCD cases, 4,819 Tourette's syndrome cases	NA	14q12		rs28754845-?	NR	1E-8		0.0131	NR unit increase	NR [6349486] (imputed)	N
829	chr14	32093547	32093548	rs7142881	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	14q12	NUBPL	rs7142881-A	NR	2E-6				Affymetrix [339272]	N
830	chr14	32225500	32225501	rs77828254	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	14q12	NR	rs77828254-?		8E-7	(PCB126)	0.23	[0.13-0.33] unit decrease	Illumina [8736858] (imputed)	N
831	chr14	32248443	32248444	rs189801708	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q12	NR	rs189801708-?	NR	2E-6		0.0080942	[0.0048-0.0114] unit increase	Affymetrix [805426] (imputed)	N
831	chr14	32270650	32270651	rs73257280	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	14q12	NR	rs73257280-?	NR	6E-7		0.101285666	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
831	chr14	32319144	32319145	rs113235453	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	14q12	NR	rs113235453-?	NR	1E-6	(EA)	7.304487	[4.37-10.24] unit decrease	Affymetrix [at least 600000] (imputed)	N
831	chr14	32353249	32353250	rs2039485	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	14q12	NUBPL	rs2039485-?	0.22	6E-6			[NR]	Illumina [551642]	N
831	chr14	32369602	32369603	rs28525613	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q12	NUBPL	rs28525613-C	0.8482	9E-7		0.007	[0.0043-0.0097] unit increase	Affymetrix [~ 7740000] (imputed)	N
832	chr14	32433506	32433507	rs11848760	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q12	NR	rs11848760-G	0.482	2E-8		0.00610286	[0.004-0.0082] unit decrease	NR [9732723] (imputed)	N
832	chr14	32433857	32433858	rs915071	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q12	NR	rs915071-?	NR	2E-6		1.2346	[NR]	Affymetrix [722112]	N
832	chr14	32446248	32446249	rs2150544	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q12		rs2150544-G	0.528	6E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
832	chr14	32500170	32500171	rs146750542	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q12	Intergenic	rs146750542-A	0.998	3E-6	(AA)	0.214	unit increase	Illumina [NR] (imputed)	N
833	chr14	32596648	32596649	rs140783387	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q12	NR	rs140783387-C	0.0885	3E-7	(EA)	0.0602	[0.037-0.083] unit increase	Illumina [~ 11800000] (imputed)	N
834	chr14	32691784	32691785	rs10141207	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	14q12	ARHGAP5, AKAP6	rs10141207-A	0.35	4E-6	(African)	1.24	[1.13-1.36]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
835	chr14	32802754	32802755	rs3784169	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q12	NR	rs3784169-?	NR	6E-9				Affymetrix [NR]	N
835	chr14	32851024	32851025	rs1951681	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	14q12	AKAP6	rs1951681-G	NR	6E-6		0.194	[0.11-0.28] unit increase	Illumina [628922]	N
835	chr14	32857893	32857894	rs1957645	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AKAP6	rs1957645-?	NR	4E-8		1.57895	[NR] unit decrease	Affymetrix [NR] (imputed)	N
835	chr14	32897336	32897337	rs11622988	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AKAP6	rs11622988-?	NR	2E-8	(female)	3.38198	[NR] unit decrease	Affymetrix [NR] (imputed)	N
836	chr14	32902251	32902252	rs79187523	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q12		rs79187523-?	NR	2E-8		1.6041	[1.04-2.16] unit decrease	Affymetrix [NR] (imputed)	N
836	chr14	32916979	32916980	rs34976846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q12		rs34976846-?	NR	6E-13				NR [~ 8900000] (imputed)	N
836	chr14	32923079	32923080	rs8011444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	14q12		rs8011444-C	NR	2E-11		0.0732	[0.052-0.095] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
836	chr14	32923335	32923336	rs3784192	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q12	AKAP6	rs3784192-A	0.2	3E-11		0.55	[0.39-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
836	chr14	32923676	32923677	rs3825751	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q12	AKAP6	rs3825751-T	0.1791	3E-10		0.5411	[0.37-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
836	chr14	32923824	32923824	rs145451266	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	14q12		rs145451266-ACCTT	0.382823069	5E-9		1.0723666	[1.047517177-1.097805416]	Illumina [8919992] (imputed)	N
836	chr14	32924504	32924505	rs1957021	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q12	AKAP6	rs1957021-C	0.222	5E-15		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
836	chr14	32924504	32924505	rs1957021	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q12	AKAP6	rs1957021-C	0.23	1E-13	(EA)	1.07		Affymetrix, Illumina [up to 12149979] (imputed)	N
836	chr14	32951555	32951556	rs1957032	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	14q12		rs1957032-?	NR	5E-6		1.12089	[1.07-1.17]	NR [675173]	N
836	chr14	32981483	32981484	rs2145587	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q12	AKAP6	rs2145587-A	0.28	2E-21		1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
836	chr14	32981483	32981484	rs2145587	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q12	AKAP6	rs2145587-A	0.28	2E-17	(EA)	1.07	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
836	chr14	32990436	32990437	rs11156751	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q12	AKAP6	rs11156751-C	0.285	7E-21		1.07	[1.06-1.09]	Illumina [34740186] (imputed)	N
837	chr14	33038860	33038861	rs9322905	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	14q12	NR	rs9322905-C	0.3955	1E-6		0.1526	[0.091-0.214] unit increase	Illumina [34985077] (imputed)	N
837	chr14	33043062	33043063	rs75806051	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q12		rs75806051-G	NR	7E-8		6.9548	[4.5-9.41] unit increase	Illumina [NR] (imputed)	N
837	chr14	33063247	33063248	rs733978	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	14q12	NR	rs733978-?	NR	3E-7		0.47	[0.36-0.61]	Illumina [539000] (imputed)	N
837	chr14	33075242	33075243	rs1956218	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	14q12	AKAP6	rs1956218-G	0.5587	2E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix [~ 7740000] (imputed)	N
837	chr14	33124160	33124161	rs17099418	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q12	NPAS3	rs17099418-?	NR	7E-6	(adenosine)	0.37045637	[0.21-0.53] unit increase	Affymetrix [at least 2500000] (imputed)	N
837	chr14	33137219	33137220	rs11850550	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	14q12	AKAP6	rs11850550-?	NR	6E-16		1.0881393	[1.07-1.11]	Illumina [13729857] (imputed)	N
837	chr14	33156121	33156122	rs1884622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q12		rs1884622-T	NR	6E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
838	chr14	33175099	33175100	rs1279143	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	14q12	AKAP6	rs1279143-?	NR	1E-10		0.03168	[0.022-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
838	chr14	33175821	33175822	rs1955512	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q12	AKAP6	rs1955512-G	0.4242	2E-8		0.0110036	[0.0071-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
838	chr14	33200622	33200623	rs11627423	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	14q12	NR	rs11627423-C		2E-6		0.1171	[0.069-0.166] SD units decrease	NR [10700000] (imputed)	N
838	chr14	33207521	33207522	rs2300835	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	14q12	AKAP6	rs2300835-A	0.1595	5E-7		0.004471	[0.0028-0.0061] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
838	chr14	33212319	33212320	rs28815022	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	14q12		rs28815022-T	0.58	2E-8		0.0553	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
838	chr14	33218292	33218293	rs142370491	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q12	AKAP6	rs142370491-C	0.018000000000000016	1E-6		1.2743075		NR [9372253] (imputed)	N
838	chr14	33230138	33230139	rs1955510	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q12	AKAP6, NPAS3	rs1955510-G	NR	7E-6	(number of awakenings after sleep onset, weekdays)	0.1396	[0.079-0.2] unit increase	Affymetrix [7141204] (imputed)	N
838	chr14	33250080	33250081	rs10131032	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	14q12	AKAP6	rs10131032-G	0.916	5E-11		1.33	1.22-1.44	Illumina [at least 6769856] (imputed)	N
838	chr14	33250080	33250081	rs10131032	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	14q12	AKAP6	rs10131032-G	0.916	2E-6		1.17	1.09-1.24	Illumina [at least 6887412] (imputed)	N
838	chr14	33257913	33257914	rs2383377	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q12	AKAP6	rs2383377-A	NR	1E-9		1.09	[1.06-1.12]	Illumina [6627481] (imputed)	N
838	chr14	33257913	33257914	rs2383377	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q12	AKAP6	rs2383377-A	NR	1E-6	(EA)	1.0862	[1.05-1.12]	Illumina [6627481] (imputed)	N
838	chr14	33257913	33257914	rs2383377	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q12	AKAP6, NPAS3	rs2383377-A	NR	2E-8		1.081	[1.05-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
838	chr14	33279009	33279010	rs12885221	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs12885221-C	NR	9E-10		6.134	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
838	chr14	33279009	33279010	rs12885221	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	AKAP6	rs12885221-C	NR	1E-9		6.09	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
838	chr14	33279009	33279010	rs12885221	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	AKAP6	rs12885221-C	NR	2E-9		0.01973684	[0.013-0.026] unit decrease	Affymetrix [NR]	N
838	chr14	33282231	33282232	rs10133551	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	AKAP6	rs10133551-T	NR	2E-8		5.613	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
838	chr14	33282469	33282470	rs2383378	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	14q12	AKAP6	rs2383378-?	0.41	6E-6				Illumina [~ 598000]	N
838	chr14	33289006	33289007	rs2007669	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs2007669-A	NR	5E-8		5.465	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
839	chr14	33292742	33292743	rs2239647	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q12		rs2239647-A	0.46	3E-9		5.96	z score increase	Affymetrix [9061022] (imputed)	N
839	chr14	33292742	33292743	rs2239647	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q12	NR	rs2239647-A	0.4453	7E-11				NR [9056863] (imputed)	N
839	chr14	33292742	33292743	rs2239647	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q12	NR	rs2239647-A	0.457256	7E-13		0.04531086	[0.033-0.058] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
839	chr14	33292742	33292743	rs2239647	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q12		rs2239647-?	NR	3E-9				NR [7857346] (imputed)	N
839	chr14	33292742	33292743	rs2239647	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	14q12		rs2239647-?	NR	1E-8				NR [7857346] (imputed)	N
839	chr14	33292742	33292743	rs2239647	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q12	NR	rs2239647-A	0.4485	3E-12		0.017439943	[0.013-0.022] unit increase	Affymetrix [10549349] (imputed)	N
839	chr14	33292742	33292743	rs2239647	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q12	AKAP6	rs2239647-?	NR	3E-11		0.013295427	[0.0094-0.0172] unit decrease	NR [7306098]	N
839	chr14	33292742	33292743	rs2239647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q12		rs2239647-?	NR	1E-21				NR [~ 8900000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4605	6E-15	(MTAG)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4605	4E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4599	7E-18	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4599	1E-9		0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4555	9E-15	(MTAG)	0.0102	[0.0077-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4481	2E-18	(MTAG)	0.0203	[0.016-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q12	Intergenic	rs2239647-A	0.4481	5E-13		0.0209	[0.015-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs2239647-A	NR	1E-13		7.424	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
839	chr14	33292742	33292743	rs2239647	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	AKAP6	rs2239647-A	NR	3E-13		7.317	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
839	chr14	33292742	33292743	rs2239647	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	AKAP6	rs2239647-A	NR	2E-12		0.020584986	[0.015-0.026] unit decrease	Affymetrix [NR]	N
839	chr14	33293121	33293122	rs1051695	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	14q12	AKAP6	rs1051695-A	0.4472	1E-18		0.0155	[0.012-0.019] unit increase	Illumina [246328]	N
839	chr14	33293530	33293531	rs4647899	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q12	NR	rs4647899-?	NR	4E-6		0.0079713	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
839	chr14	33294780	33294781	rs2300861	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q12	AKAP6	rs2300861-?		8E-9				NR [6786993] (imputed)	N
839	chr14	33297397	33297398	rs2143975	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q12	NA	rs2143975-C	0.4578	8E-21		0.0162	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
839	chr14	33298731	33298732	rs34179565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q12		rs34179565-C	NR	7E-16		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
839	chr14	33298731	33298732	rs34179565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q12		rs34179565-C	NR	4E-20		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
839	chr14	33298823	33298823	rs34902169	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q12	AKAP6	rs34902169-T	0.61101	2E-8		0.0131289	[0.0086-0.0176] unit decrease	NR [16516521] (imputed)	N
839	chr14	33299481	33299482	rs4261436	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	AKAP6	rs4261436-T	NR	1E-10		0.018776374	[0.013-0.024] unit increase	Affymetrix [NR]	N
839	chr14	33302881	33302882	rs17522122	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	14q12	AKAP6	rs17522122-T	0.4891	5E-9				Affymetrix, Illumina [2331072] (imputed)	N
839	chr14	33302881	33302882	rs17522122	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	14q12	AKAP6	rs17522122-T	0.48	4E-9				Illumina [5041948] (imputed)	N
839	chr14	33302881	33302882	rs17522122	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q12	NR	rs17522122-G	0.5238	1E-13		0.0343	[0.025-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
839	chr14	33302881	33302882	rs17522122	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q12	AKAP6	rs17522122-T	0.4742	3E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q12	NA	rs17522122-T	0.4667	8E-24		0.0167	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q12	NA	rs17522122-T	0.4667	8E-24		0.0167	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q12	NR	rs17522122-G	NR	8E-12		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-T	0.4726	6E-8	(EA)	0.0237	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-T	0.4665	3E-8		0.0233	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-?	NR	7E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-?	NR	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-T	0.4726	3E-8	(EA)	0.0212	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-T	0.4665	4E-6	(men)	0.0246	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q12	AKAP6, NPAS3	rs17522122-T	0.4665	2E-8		0.0208	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q12	NPAS3	rs17522122-T	0.476273203205528	9E-9		0.016266428	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
839	chr14	33302881	33302882	rs17522122	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	AKAP6	rs17522122-T	0.478	6E-6	(EA, women)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
839	chr14	33302881	33302882	rs17522122	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	AKAP6	rs17522122-T	0.476	3E-6	(EA)	0.015	[0.0087-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
839	chr14	33302881	33302882	rs17522122	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q12	AKAP6	rs17522122-T	0.471	3E-6		0.015	[0.0084-0.0206] kg/m2 increase	Affymetrix, Illumina [2550021]	N
839	chr14	33302881	33302882	rs17522122	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	14q12	AKAP6	rs17522122-?	NR	3E-8		0.0311	[0.020-0.042] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
839	chr14	33303273	33303274	rs7146265	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q12		rs7146265-G	0.517	5E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
839	chr14	33303516	33303517	rs7146202	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q12	NR	rs7146202-A	NR	1E-13		7.396	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
839	chr14	33303516	33303517	rs7146202	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	AKAP6	rs7146202-A	NR	4E-11		6.608	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
839	chr14	33303539	33303540	rs12883788	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q12	AKAP6	rs12883788-C	NR	2E-9		0.00744368	[0.005-0.0099] unit increase	Affymetrix [10061374] (imputed)	N
839	chr14	33303539	33303540	rs12883788	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q12	NR	rs12883788-C	0.5887	3E-16		0.0327	[0.025-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
839	chr14	33303539	33303540	rs12883788	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q12	AKAP6	rs12883788-C	0.540271	2E-19		0.0124311	[0.0097-0.0151] unit decrease	Affymetrix [12370749]	N
839	chr14	33303539	33303540	rs12883788	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q12	NR	rs12883788-T		2E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
839	chr14	33303539	33303540	rs12883788	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q12	AKAP6	rs12883788-?		2E-33				Affymetrix, Illumina [NR] (imputed)	N
839	chr14	33303539	33303540	rs12883788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q12	NR	rs12883788-?	NR	5E-20				Affymetrix [~ 8270000] (imputed)	N
839	chr14	33303539	33303540	rs12883788	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q12	AKAP6, NPAS3	rs12883788-T	0.425	4E-10		6.244	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
839	chr14	33303539	33303540	rs12883788	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q12	NR	rs12883788-T	0.4319	4E-11		0.0491	[0.035-0.064] unit increase	Illumina [~ 10600000] (imputed)	N
839	chr14	33303539	33303540	rs12883788	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q12	NR	rs12883788-T	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
839	chr14	33304430	33304431	rs10147849	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q12	AKAP6	rs10147849-T	NR	1E-9		0.01785439	[0.012-0.024] unit increase	Affymetrix [NR]	N
839	chr14	33305342	33305343	rs12895330	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q12	NR	rs12895330-?	NR	6E-7		0.101138	[0.061-0.141] unit decrease	NR [13958389] (imputed)	N
839	chr14	33305342	33305343	rs12895330	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q12	AKAP6, NPAS3	rs12895330-C	0.49	4E-9		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
839	chr14	33308020	33308021	rs8016504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q12		rs8016504-A	0.5427	7E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
839	chr14	33308020	33308021	rs8016504	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q12	AKAP6	rs8016504-A	NR	1E-8		5.729	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
839	chr14	33309273	33309274	rs7161424	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q12	AKAP6	rs7161424-G	0.520764	5E-13		0.0102364	[0.0075-0.013] unit decrease	Affymetrix [12370749]	N
839	chr14	33381097	33381098	rs12146962	22138694	Lin Z	2011-12-04	Nat Genet	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls	2,100 Han Chinese ancestry cases, 3,496 Han Chinese ancestry controls	14q13.1	NR	rs12146962-?	NR	9E-6		1.14	[1.08-1.20]	Illumina [1356350] (imputed)	N
839	chr14	33382974	33382974	rs1408054791	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q13.1	NR	rs1408054791-T	0.05749	3E-9	(NNT)	0.1828	NR unit increase	Illumina [1671387] (imputed)	N
839	chr14	33395059	33395060	rs35955717	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q13.1	NPAS3	rs35955717-T	0.851	1E-6		1.08134	[1.05-1.11]	NR [9372253] (imputed)	N
839	chr14	33407544	33407545	rs8009934	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q13.1	NR	rs8009934-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
839	chr14	33409811	33409812	rs36063234	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q13.1	NPAS3	rs36063234-?		5E-10				NR [6786993] (imputed)	N
839	chr14	33410748	33410749	rs1956002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q13.1		rs1956002-?	NR	3E-9				NR [~ 8900000] (imputed)	N
839	chr14	33412995	33412996	rs4981170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q13.1		rs4981170-G	NR	3E-8		0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
839	chr14	33412995	33412996	rs4981170	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q13.1	NR	rs4981170-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
839	chr14	33412995	33412996	rs4981170	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	14q13.1	NR	rs4981170-G	0.8057	7E-13		1.0559661	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
839	chr14	33412995	33412996	rs4981170	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	14q13.1	NA	rs4981170-G	0.802	3E-10	(Female)	1.0604454	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
840	chr14	33476265	33476266	rs4982029	20713499	Huang J	2010-08-16	Am J Psychiatry	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	14q13.1	NPAS3	rs4982029-A	0.02	4E-6				Affymetrix, Perlegen [1574154] (imputed)	N
840	chr14	33480921	33480922	rs8015959	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	14q13.1	NR	rs8015959-T	0.02	5E-6		1.59	[NR]	Affymetrix [1769948] (imputed)	N
840	chr14	33498875	33498876	rs17455969	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	14q13.1		rs17455969-A	NR	8E-6		4.476468	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
840	chr14	33498875	33498876	rs17455969	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	14q13.1	NR	rs17455969-?	NR	1E-7	(Japanese)	1.1128	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
841	chr14	33586562	33586563	rs17460823	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	14q13.1	NPAS3	rs17460823-?	NR	2E-6	(C-reactive protein)			Affymetrix [2543887] (imputed)	N
841	chr14	33591104	33591105	rs8005131	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q13.1	NPAS3	rs8005131-G	NR	5E-8		0.00727687	[0.0047-0.0099] unit decrease	Affymetrix [10061374] (imputed)	N
841	chr14	33603568	33603569	rs781419737	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	14q13.1	NPAS3	rs781419737-A	0.0011	5E-6		1.9619	[1.12-2.8] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
841	chr14	33614548	33614549	rs72676787	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Tyrosine meal response (LMM)	11,410 individuals	NA	14q13.1		rs72676787-C	0.0199899	4E-8		0.337512	[0.17-0.5] unit decrease	Illumina [7568622] (imputed)	N
841	chr14	33617125	33617126	rs114076267	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q13.1	NR	rs114076267-G	0.02265	3E-8	(ACADM)	0.9764	NR unit increase	Illumina [1671387] (imputed)	N
841	chr14	33658744	33658745	rs912855	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q13.1	NR	rs912855-T	0.592	8E-12		0.00751091	[0.0054-0.0097] unit increase	NR [9732723] (imputed)	N
841	chr14	33658744	33658745	rs912855	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	14q13.1	NR	rs912855-T	0.593	3E-9		0.00878598	[0.0059-0.0117] unit decrease	NR [9732723] (imputed)	N
841	chr14	33673212	33673213	rs373408008	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q13.1		rs373408008-G	0.72	4E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
841	chr14	33677202	33677203	rs1958023	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	14q13.1	NPAS3	rs1958023-?	NR	4E-6			[NR]	Illumina [283437]	N
841	chr14	33684116	33684117	rs7151302	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	14q13.1	NPAS3	rs7151302-C	0.136	2E-6		0.14	[0.081-0.199] unit decrease	Illumina [2316178] (imputed)	N
842	chr14	33727125	33727126	rs10148610	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	14q13.1	NPAS3	rs10148610-?		9E-6		1.2167	[1.12-1.32]	Illumina [9389922] (imputed)	N
842	chr14	33769911	33769912	rs11627967	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	14q13.1	NPAS3	rs11627967-T	0.016	2E-7		0.0396	[0.024-0.055] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
842	chr14	33795590	33795591	rs80221072	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	14q13.1	NPAS3, AKAP6, LOC728925	rs80221072-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
842	chr14	33801148	33801149	rs118161330	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	14q13.1	NPAS3	rs118161330-A	0.017	3E-8	(TIMP-1)	140.235	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
843	chr14	33819654	33819655	rs7159440	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	14q13.1	NPAS3	rs7159440-G	0.3046	2E-6		0.0076	[0.0045-0.0107] unit increase	Affymetrix [~ 7740000] (imputed)	N
843	chr14	33825531	33825532	rs11156786	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	14q13.1	NPAS3	rs11156786-A		6E-9		0.92	[NR]	Affymetrix [~ 79000000] (imputed)	N
843	chr14	33829319	33829320	rs2274511	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q13.1	NPAS3	rs2274511-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
843	chr14	33847225	33847226	rs17100890	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NPAS3	rs17100890-?	NR	6E-11	(female)	2.77357	[NR] unit increase	Affymetrix [NR] (imputed)	N
843	chr14	33918037	33918038	rs11845867	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	14q13.1	intergenic	rs11845867-C	0.2642	6E-6		0.0626	[0.036-0.090] unit increase	Illumina [2400000] (imputed)	N
844	chr14	33949919	33949920	rs573781520	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q13.1	NPAS3	rs573781520-A	0.0029	6E-6		0.5707	[0.32-0.82] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
844	chr14	33993517	33993518	rs1957316	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q13.1	NR	rs1957316-A	0.253271	5E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
844	chr14	34001963	34001964	rs75422372	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	14q13.1	NR	rs75422372-?	NR	4E-6		3563.542	NR unit decrease	Illumina [2379855]	N
844	chr14	34013720	34013721	rs8003466	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	14q13.1	NR	rs8003466-A	0.19	3E-6		0.92	[0.88-0.96]	Illumina [8468885] (imputed)	N
844	chr14	34015020	34015021	rs10146472	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	14q13.1	NPAS3	rs10146472-A	0.802325969	4E-7		1.125447	[1.08-1.18]	Illumina [10439017] (imputed)	N
844	chr14	34016463	34016464	rs12590660	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q13.1	NPAS3	rs12590660-C	0.5787	3E-8		0.072	[0.044-0.1] unit decrease	Affymetrix [~ 11900000] (imputed)	N
844	chr14	34018985	34018986	rs12891042	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q13.1		rs12891042-T	0.5853	1E-10		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
844	chr14	34021027	34021028	rs17101520	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q13.1	NPAS3	rs17101520-G	0.5801	4E-8		0.071	[0.043-0.099] unit decrease	Affymetrix [~ 11900000] (imputed)	N
844	chr14	34022138	34022139	rs2210054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q13.1	Intergenic	rs2210054-A	0.5847	2E-10	(MTAG)	0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
845	chr14	34144829	34144830	rs2383522	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	14q13.1	NPAS3	rs2383522-T	0.415	8E-6		0.018	[0.01-0.026] unit increase	Affymetrix [~ 10446505] (imputed)	N
845	chr14	34153073	34153074	rs8006719	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	14q13.1	SNX6	rs8006719-?	NR	3E-10				Illumina [747780]	N
845	chr14	34160161	34160162	rs4627235	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	14q13.1	NPAS3	rs4627235-?	NR	6E-6		2.32		Illumina [6778521] (imputed)	N
845	chr14	34170241	34170242	rs12148012	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	14q13.1	NPAS3	rs12148012-G	0.128	4E-6		1.62	[1.32-1.99]	Illumina [7959153] (imputed)	N
845	chr14	34190981	34190982	rs17101773	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	14q13.1	NR	rs17101773-A		6E-6				NR [525577]	N
846	chr14	34237952	34237953	rs36059107	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q13.1	NR	rs36059107-A	NR	7E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
846	chr14	34276506	34276507	rs57900878	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	14q13.1	NR	rs57900878-?	NR	1E-6		0.12199457	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
846	chr14	34276954	34276955	rs77276680	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	14q13.1	NR	rs77276680-?	NR	3E-7		2689.7183	NR unit decrease	Illumina [2379855]	N
846	chr14	34283802	34283803	rs58842363	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q13.1	NR	rs58842363-?		3E-6				Illumina [4322238] (imputed)	N
846	chr14	34289437	34289438	rs1952157	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	14q13.1	NPAS3	rs1952157-C	0.69	6E-6	(opposite direction)	1.08	[1.05-1.12]	Illumina [up to 6000000] (imputed)	N
846	chr14	34304069	34304070	rs10147155	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	14q13.1		rs10147155-T	0.36	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
846	chr14	34310412	34310413	rs10149826	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	14q13.1		rs10149826-C	0.88	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
846	chr14	34340238	34340239	rs148703984	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	14q13.1	NR	rs148703984-?	NR	4E-6		0.4263	[0.24-0.61] unit increase	Illumina [at least 560000] (imputed)	N
847	chr14	34410891	34410892	rs996347	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	14q13.1	EGLN3	rs996347-C	0.355	3E-41		0.049	[0.042-0.056] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
847	chr14	34443925	34443928	rs35833468	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	14q13.1	EGLN3	rs35833468-?	NR	3E-6		1.0869565	[1.04-1.12]	Affymetrix, Illumina [11480632] (imputed)	N
848	chr14	34493423	34493424	rs60225398	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	14q13.1	NR	rs60225398-T	0.761321	2E-6		1.0752687	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
848	chr14	34496451	34496452	rs191936903	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q13.1	NR	rs191936903-?	NR	3E-6	(Native Hawaiian)	1.1003	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
848	chr14	34522903	34522904	rs74412765	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Reasoning	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	14q13.1	LOC102724945	rs74412765-T		3E-8		1.7	[NR] unit decrease	Illumina [NR] (imputed)	N
848	chr14	34552651	34552652	rs75617063	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q13.1	NR	rs75617063-C	0.01045	2E-9	(CYP2E1)	0.5343	NR unit increase	Illumina [1671387] (imputed)	N
849	chr14	34605452	34605453	rs797324	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	14q13.1	EGLN3	rs797324-C	NR	8E-7	(daytime resting, weekdays)	0.5679	[0.34-0.79] unit increase	Affymetrix [7141204] (imputed)	N
849	chr14	34645543	34645544	rs797344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.1	NR	rs797344-C	0.705594	3E-19				Affymetrix, Illumina [24653286] (imputed)	N
849	chr14	34645543	34645544	rs797344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q13.1	NR	rs797344-C	0.685065	3E-21		0.018941	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
849	chr14	34645543	34645544	rs797344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.1	NR	rs797344-C	0.705086	3E-23				Affymetrix, Illumina [24558453] (imputed)	N
849	chr14	34645543	34645544	rs797344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q13.1	NR	rs797344-C	0.685016	1E-24		0.020532	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
849	chr14	34646268	34646269	rs797343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q13.1		rs797343-T	NR	7E-12		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
849	chr14	34646268	34646269	rs797343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q13.1	EGLN3	rs797343-T	0.682107	5E-13		0.017167674	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
849	chr14	34646268	34646269	rs797343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q13.1	EGLN3	rs797343-T	0.682101	3E-19		0.021341264	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
849	chr14	34646268	34646269	rs797343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q13.1	EGLN3	rs797343-T	0.68209	3E-21		0.022508562	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
849	chr14	34646268	34646269	rs797343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q13.1		rs797343-?	NR	2E-10				NR [~ 8900000] (imputed)	N
849	chr14	34646268	34646269	rs797343	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	14q13.1	EGLN3	rs797343-T	0.6828	3E-9		0.02249192	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
849	chr14	34646542	34646543	rs797342	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q13.1	intergenic	rs797342-G		1E-16		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
849	chr14	34654539	34654540	rs12437397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q13.1		rs12437397-G	NR	6E-12		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
849	chr14	34715770	34715771	rs72669675	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	14q13.1	SPTSSA	rs72669675-A	0.63	4E-6				Affymetrix, Illumina [8002429] (imputed)	N
849	chr14	34716193	34716194	rs12881460	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q13.1		rs12881460-C	0.35	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
849	chr14	34717130	34717131	rs35590770	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q13.1	NR	rs35590770-G	0.3684	1E-10				NR [9056863] (imputed)	N
849	chr14	34721133	34721134	rs12879626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q13.1		rs12879626-G	NR	4E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
849	chr14	34721133	34721134	rs12879626	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	14q13.1	SPTSSA	rs12879626-T	0.386	2E-9		0.079	[0.054-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
849	chr14	34723470	34723471	rs17520143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q13.1		rs17520143-C	0.26	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
849	chr14	34724549	34724550	rs12897414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q13.1	EGLN3	rs12897414-C	0.384378	9E-13		0.01641362	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
849	chr14	34724549	34724550	rs12897414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q13.1	EGLN3	rs12897414-C	0.384387	3E-11		0.015266775	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
849	chr14	34724549	34724550	rs12897414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q13.1	EGLN3	rs12897414-C	0.384382	2E-13		0.016935857	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
850	chr14	34767099	34767100	rs75459295	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Primary dental caries (decayed and filled teeth)	1,116 children	NA	14q13.1		rs75459295-?	NR	6E-8		2.26	unit decrease	Illumina [8859951] (imputed)	N
850	chr14	34793838	34793839	rs76827035	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	14q13.1	NR	rs76827035-G	NR	7E-6		0.1776	[0.1-0.255] SD units increase	NR [10700000] (imputed)	N
850	chr14	34801598	34801599	rs1958581	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	14q13.1	intergenic	rs1958581-?		8E-6	(PC3)	0.1353	[NR] unit decrease	Illumina [4167292] (imputed)	N
850	chr14	34801598	34801599	rs1958581	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q13.1	EAPP	rs1958581-?	NR	3E-6	(2-hydroxyglutaric acid)	1.2960865	[0.76-1.84] unit decrease	Affymetrix [at least 2500000] (imputed)	N
850	chr14	34844375	34844376	rs1958589	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	14q13.1	EAPP, SNX6, C14orf147	rs1958589-C		4E-6				Illumina [944512] (imputed)	N
851	chr14	34892606	34892607	rs10142635	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	14q13.1	NR	rs10142635-A	0.88	6E-7	(AA)	6.61	[4.16-9.06] bpm decrease	Illumina [at least 1100000] (imputed)	N
851	chr14	34995774	34995775	rs770642394	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q13.1	NR	rs770642394-?	NR	6E-6		0.0076763	[0.0044-0.011] unit increase	Affymetrix [805426] (imputed)	N
852	chr14	34997279	34997280	rs8013954	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	14q13.1	EAPP	rs8013954-?	NR	6E-9				NR [3144808] (imputed)	N
852	chr14	35088634	35088635	rs4981245	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q13.1		rs4981245-A	0.5687	2E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
852	chr14	35088634	35088635	rs4981245	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q13.1	Intergenic	rs4981245-A	0.5687	4E-8	(MTAG)	0.0073	[0.0048-0.0098] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
852	chr14	35110856	35110857	rs4424827	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q13.1	SNX6	rs4424827-T	0.5663	4E-10		0.0948	[0.065-0.125] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
853	chr14	35135185	35135186	rs7141276	23555300	Cui J	2013-03-28	PLoS Genet	Genome-wide association study and gene expression analysis identifies CD84 as a predictor of response to etanercept therapy in rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	Up to 2,706 European ancestry cases	NA	14q13.1	NR	rs7141276-A	0.41	2E-6	(all patients, EULAR response analysis)	0.37	[NR] unit increase	Affymetrix, Illumina [~ 2000000] (imputed)	N
853	chr14	35154380	35154381	rs12435790	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q13.1	NR	rs12435790-G	0.07813199999999998	6E-10		0.0102458	[0.0071-0.0134] unit increase	Affymetrix [16582909] (imputed)	N
853	chr14	35154380	35154381	rs12435790	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q13.1	NR	rs12435790-G	0.07813199999999998	2E-6		0.00853358	[0.0051-0.012] unit increase	Affymetrix [16582965] (imputed)	N
853	chr14	35154380	35154381	rs12435790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q13.1	NR	rs12435790-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
853	chr14	35154380	35154381	rs12435790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q13.1		rs12435790-?	NR	8E-9				NR [~ 8900000] (imputed)	N
853	chr14	35158183	35158184	rs35273436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q13.1	NR	rs35273436-C	NR	3E-9		0.0244	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
853	chr14	35164494	35164495	rs2383635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q13.1		rs2383635-G	NR	5E-15		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
853	chr14	35164548	35164549	rs12894146	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	14q13.1	CFL2	rs12894146-C	0.548324	1E-18		0.00337475	[0.0026-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
853	chr14	35173774	35173775	rs73241997	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q13.1	CFL2	rs73241997-T	0.142	3E-15		1.08	[1.06-1.10]	Illumina [34740186] (imputed)	N
853	chr14	35173774	35173775	rs73241997	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q13.1	SNX6, CFL2	rs73241997-T	0.16	1E-13		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
853	chr14	35178296	35178297	rs12882669	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q13.1	CFL2	rs12882669-?	NR	5E-13		0.0021	[0.0015-0.0027] unit increase	Affymetrix [21347608] (imputed)	N
853	chr14	35178296	35178297	rs12882669	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q13.1	CFL2	rs12882669-?	NR	1E-14		0.0033	[0.0025-0.0041] unit increase	Affymetrix [21347608] (imputed)	N
853	chr14	35182406	35182409	rs35219728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	14q13.1		rs35219728-G	NR	3E-10		0.0607	[0.042-0.08] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
853	chr14	35182406	35182409	rs35219728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q13.1		rs35219728-G	NR	9E-16		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
853	chr14	35184322	35184323	rs10141892	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q13.1	CFL2, BAZ1A	rs10141892-C	0.59	1E-10		6.45	z-score increase	Affymetrix [4314223] (imputed)	N
853	chr14	35184322	35184323	rs10141892	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q13.1	CFL2, BAZ1A	rs10141892-C	0.59	9E-13		7.14	z-score increase	Affymetrix [4312306] (imputed)	N
853	chr14	35186693	35186694	rs11846704	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q13.1	NR	rs11846704-C	0.73116	3E-9		0.0128621	[0.0086-0.0171] unit increase	Affymetrix [15000001]	N
853	chr14	35186693	35186694	rs11846704	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q13.1	CFL2	rs11846704-T	0.27	9E-13	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
853	chr14	35187251	35187252	rs10151517	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	14q13.1	KRT18P6	rs10151517-?	NR	5E-8		0.0158	[0.011-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
853	chr14	35189913	35189914	rs76457959	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	14q13.1	CFL2	rs76457959-T	NR	3E-9		1.62	NR	Illumina [up to 4495750] (imputed)	N
853	chr14	35193326	35193327	rs538979621	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	14q13.1	CFL2	rs538979621-CT	0.9988	8E-6		1.8873	[1.06-2.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
853	chr14	35215563	35215564	rs12432434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q13.1		rs12432434-T	0.129586	7E-19		0.029868271	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
853	chr14	35215601	35215602	rs10145299	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q13.1	BAZ1A	rs10145299-T	0.506783	6E-17		0.0169153	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
853	chr14	35215601	35215602	rs10145299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q13.1		rs10145299-?	NR	5E-32				NR [~ 8900000] (imputed)	N
853	chr14	35215601	35215602	rs10145299	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.1		rs10145299-?	NR	6E-30		0.0243368	[0.02-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
853	chr14	35215601	35215602	rs10145299	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q13.1	BAZ1A	rs10145299-T	0.512195	9E-8	(women)	0.0237714	[0.015-0.033] unit decrease	NR [17166351] (imputed)	N
853	chr14	35215601	35215602	rs10145299	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q13.1	BAZ1A	rs10145299-T	0.512142	2E-12		0.0241396	[0.017-0.031] unit decrease	NR [17166351] (imputed)	N
853	chr14	35216853	35216854	rs7155348	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.1		rs7155348-?	NR	1E-16		0.0184732	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
853	chr14	35224429	35224430	rs13379337	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.1		rs13379337-?	NR	3E-30		0.0243281	[0.02-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
853	chr14	35225321	35225322	rs548364033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q13.1		rs548364033-C	NR	2E-15		0.0289	[0.022-0.036] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
853	chr14	35225321	35225322	rs548364033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q13.1		rs548364033-C	NR	6E-15		0.0283	[0.021-0.035] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
853	chr14	35225615	35225616	rs113731836	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.0977	2E-8				NR [9056863] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q13.1	BAZ1A	rs113731836-C	0.100939	6E-20		0.0338112	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.0987003	5E-15				Affymetrix, Illumina [24332387] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.100351	8E-18		0.027664	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.100025	1E-23				Affymetrix, Illumina [24246363] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.100357	2E-27		0.034246	[0.028-0.04] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.0995194	6E-21				Affymetrix, Illumina [20825802] (imputed)	N
853	chr14	35225615	35225616	rs113731836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q13.1	NR	rs113731836-C	0.100878	7E-24		0.033779	[0.027-0.04] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
853	chr14	35225646	35225647	rs112513907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q13.1		rs112513907-T	NR	4E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
853	chr14	35225646	35225647	rs112513907	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.1	BAZ1A	rs112513907-T	NR	2E-9		0.0281666	[0.019-0.037] unit increase	Affymetrix [321016] (imputed)	N
853	chr14	35225646	35225647	rs112513907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q13.1	BAZ1A	rs112513907-T	0.101047	6E-12		0.025389703	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
853	chr14	35225646	35225647	rs112513907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q13.1		rs112513907-?	NR	2E-20				NR [~ 8900000] (imputed)	N
853	chr14	35226810	35226811	rs151102833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	14q13.1	BAZ1A	rs151102833-T	0.103	5E-17		0.04984513	[0.038-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr14	35237676	35237677	rs10147194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q13.1	BAZ1A	rs10147194-G	0.123618	5E-10		0.021378307	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
853	chr14	35241253	35241254	rs113131010	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q13.1		rs113131010-A	0.12	3E-10		6.32	z score increase	Affymetrix [9061022] (imputed)	N
853	chr14	35241253	35241254	rs113131010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	14q13.1	BAZ1A	rs113131010-A	0.1006	1E-12		0.04283507	[0.031-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr14	35241253	35241254	rs113131010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q13.1	BAZ1A	rs113131010-A	0.1005	8E-9		0.03412656	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr14	35241253	35241254	rs113131010	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	14q13.1	BAZ1A	rs113131010-A	0.1006	2E-18		0.05259724	[0.041-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr14	35246471	35246472	rs8015303	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	14q13.1	BAZ1A	rs8015303-G	0.06967	4E-7		0.7229	[0.47-0.98] unit decrease	Illumina [533687]	N
853	chr14	35246533	35246534	rs7153289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.1	BAZ1A	rs7153289-T	NR	2E-11		0.0217958	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
854	chr14	35259150	35259151	rs4982211	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q13.1		rs4982211-A	0.12	6E-18		8.63	z score increase	Affymetrix [9061022] (imputed)	N
854	chr14	35259150	35259151	rs4982211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q13.1	BAZ1A	rs4982211-A	0.100848	2E-11		0.024891814	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35259150	35259151	rs4982211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q13.1		rs4982211-?	NR	2E-15				NR [~ 8900000] (imputed)	N
854	chr14	35267335	35267336	rs10146956	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	14q13.1		rs10146956-?	NR	3E-6	(adjusted)	0.05	[0.03-0.07] unit increase	Illumina [7066534] (imputed)	N
854	chr14	35286161	35286162	rs17592366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q13.2	BAZ1A	rs17592366-A	0.100627	2E-19		0.033526167	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35286161	35286162	rs17592366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q13.2	BAZ1A	rs17592366-A	0.100603	8E-33		0.044540863	[0.037-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35286161	35286162	rs17592366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q13.2	BAZ1A	rs17592366-A	0.100567	2E-32		0.04399065	[0.037-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35286161	35286162	rs17592366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	14q13.2	BAZ1A	rs17592366-A	0.0998	3E-17		0.05055917	[0.039-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr14	35286161	35286162	rs17592366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	14q13.2	BAZ1A	rs17592366-A	0.0998	2E-21		0.05674984	[0.045-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr14	35293184	35293185	rs1200399	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	14q13.2	NR	rs1200399-C	NR	3E-9		0.9	[0.87-0.93]	NR [NR] (imputed)	N
854	chr14	35293184	35293185	rs1200399	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	14q13.2	NR	rs1200399-C	NR	3E-10		0.88	[0.85-0.92]	NR [NR] (imputed)	N
854	chr14	35293184	35293185	rs1200399	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	14q13.2	NR	rs1200399-C	0.49	4E-7	(East Asian)	1.11	[1.06-1.15]	Illumina [~ 11000000] (imputed)	N
854	chr14	35293184	35293185	rs1200399	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	14q13.2	BAZ1A	rs1200399-C	0.405	3E-9		1.11	[1.07-1.15]	Illumina [~ 11000000] (imputed)	N
854	chr14	35293184	35293185	rs1200399	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	14q13.2	NR	rs1200399-C	0.49	9E-8	(East Asian)	1.12	[1.08-1.17]	Illumina [~ 11000000] (imputed)	N
854	chr14	35293184	35293185	rs1200399	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	14q13.2	NR	rs1200399-C	0.42	3E-10		1.13	[1.09-1.18]	Illumina [~ 11000000] (imputed)	N
854	chr14	35310174	35310175	rs77945277	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion in depression	2,675 European ancestry responder cases, 1,861 European ancestry non-responder cases	NA	14q13.2	BAZ1A	rs77945277-?		2E-7		11.111111	[3.83-32.26]	Illumina [~ 12000000] (imputed)	N
854	chr14	35312131	35312132	rs56996825	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs56996825-?	NR	2E-19		0.019994	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
854	chr14	35319832	35319833	rs7148739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs7148739-T	0.0895265	5E-24				Affymetrix, Illumina [23467995] (imputed)	N
854	chr14	35319832	35319833	rs7148739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	14q13.2	NR	rs7148739-T	0.096923	1E-21		0.03038	[0.024-0.037] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
854	chr14	35334327	35334328	rs35265117	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs35265117-?	NR	2E-13		0.0192806	[0.014-0.024] unit increase	Affymetrix [20259828] (imputed)	N
854	chr14	35338093	35338097	rs201894973	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs201894973-?	NR	2E-20		0.0200985	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
854	chr14	35342738	35342739	rs80306194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q13.2	BAZ1A	rs80306194-C	0.100486	2E-26		0.039615173	[0.032-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35342738	35342739	rs80306194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q13.2	BAZ1A	rs80306194-C	0.100424	7E-39		0.048416246	[0.041-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr14	35344039	35344040	rs113235072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q13.2		rs113235072-C	NR	2E-16		0.0357	[0.027-0.044] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
854	chr14	35354552	35354552	rs71435825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q13.2	NR	rs71435825-CAAAT	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
854	chr14	35354583	35354583	rs71121235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q13.2		rs71121235-CAAAT	NR	8E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
854	chr14	35355299	35355300	rs1400745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	14q13.2		rs1400745-A	0.471	7E-11				Affymetrix [10369434] (imputed)	N
854	chr14	35355299	35355300	rs1400745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q13.2		rs1400745-A	0.471696	3E-14		0.017267479	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
854	chr14	35355299	35355300	rs1400745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	14q13.2	intergenic	rs1400745-G	0.528	3E-9		0.02142296	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
854	chr14	35359723	35359723	rs201613983	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs201613983-?	NR	2E-22		0.0214745	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
854	chr14	35362138	35362139	rs113321876	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs113321876-?	NR	2E-18		0.0193747	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
854	chr14	35363903	35363904	rs17102823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.2	RP11-73E17.2	rs17102823-C	NR	1E-8		0.0253999	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
854	chr14	35363903	35363904	rs17102823	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Colorectal carcinoma in primary sclerosing cholangitis	127 European ancestry cases, 2,822 European ancestry controls	NA	14q13.2	FAM177A1, LOC101927178, PPP2R3C	rs17102823-C	0.139	7E-7		2.29	[1.65-3.17]	Illumina [130422]	N
854	chr14	35366849	35366850	rs34638654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q13.2		rs34638654-C	0.354199	3E-9		0.013855518	[0.0093-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
854	chr14	35371696	35371697	rs6571690	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	14q13.2	BAZ1A, IGBP1P1	rs6571690-A	0.09	6E-6		1.51		Illumina [8974355] (imputed)	N
854	chr14	35380939	35380940	rs60306822	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2	rs60306822-T	NR	4E-8		0.0181975	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
854	chr14	35380939	35380940	rs60306822	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2	rs60306822-T	NR	3E-8		0.0177019	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
855	chr14	35390145	35390146	rs799661	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q13.2	NR	rs799661-C	0.8706	7E-9		0.043	[0.028-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
855	chr14	35409700	35409701	rs712315	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	14q13.2		rs712315-A	NR	6E-7		0.148464	[0.09-0.207] unit increase	NR [5054572] (imputed)	N
855	chr14	35409700	35409701	rs712315	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q13.2	NR	rs712315-T	0.783	4E-8		0.0282	[0.018-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
855	chr14	35412360	35412361	rs7146776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2	rs7146776-A	NR	2E-11		0.02139	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
855	chr14	35420371	35420372	rs8004237	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q13.2		rs8004237-?	NR	2E-21		0.0205943	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
855	chr14	35425011	35425012	rs10134914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2	rs10134914-G	NR	5E-10		0.019895	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
855	chr14	35438798	35438799	rs2273156	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	14q13.2	RP11-85K15.2, SRP54	rs2273156-C	0.19	3E-6		1.29	[1.16-1.44]	Affymetrix, Illumina [NR] (imputed)	N
855	chr14	35444424	35444425	rs799469	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	14q13.2		rs799469-G	NR	2E-9		0.154368	[0.1-0.2] unit increase	NR [2787054] (imputed)	N
855	chr14	35448608	35448608	rs71435836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2	rs71435836-C	NR	5E-8		0.0183443	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
855	chr14	35450293	35450294	rs3759549	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q13.2	SRP54	rs3759549-A	0.506883	4E-12		0.0139106	[0.01-0.0178] unit decrease	NR [13737936] (imputed)	N
855	chr14	35451364	35451365	rs8009854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2, SRP54	rs8009854-G	NR	4E-14		0.0222819	[0.017-0.028] unit decrease	Affymetrix [321788] (imputed)	N
855	chr14	35451364	35451365	rs8009854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.2	RP11-85K15.2, SRP54	rs8009854-G	NR	2E-9		0.0169948	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
855	chr14	35460490	35460491	rs34793309	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	14q13.2	NR	rs34793309-G	0.475	3E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
855	chr14	35465635	35465636	rs799498	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q13.2	FAM177A1	rs799498-T	0.8515625	2E-83	(FAM177A1, 8039_41_3)	0.66150457	[0.6-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
855	chr14	35504691	35504691	rs142303797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.2	SRP54	rs142303797-T	NR	4E-8		0.0266259	[0.017-0.036] unit increase	Affymetrix [323123] (imputed)	N
855	chr14	35515095	35515096	rs3809448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.2	FAM177A1	rs3809448-T	NR	5E-9		0.0218751	[0.015-0.029] unit decrease	Affymetrix [321788] (imputed)	N
855	chr14	35515606	35515608	rs4007475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q13.2	FAM177A1	rs4007475-T	0.851	1E-144	(Protein FAM177A1, FAM177A1.8039.41.3)	0.81	[0.75-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
855	chr14	35516212	35516213	rs799473	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM177A1	5,362 Icelandic ancestry individuals	NA	14q13.2		rs799473-G	0.142	4E-155		0.68406	[0.63-0.73] unit increase	Illumina [7506463] (imputed)	N
856	chr14	35528022	35528023	rs58770366	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q13.2	NR	rs58770366-A	0.793436	2E-8		0.0143101	[0.0094-0.0193] unit decrease	NR [NR]	N
856	chr14	35539130	35539131	rs79403677	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	14q13.2	FAM177A1	rs79403677-T		2E-8				NR [NR] (imputed)	N
856	chr14	35556186	35556186	rs146021364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q13.2		rs146021364-AT	NR	2E-23		0.026	[0.021-0.031] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
856	chr14	35559125	35559126	rs2038255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	14q13.2	PPP2R3C, FAM177A1	rs2038255-T	0.1896	8E-13		0.03343626	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr14	35563210	35563211	rs8006884	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	14q13.2	PPP2R3C	rs8006884-?	NR	7E-10	(subset analysis)			Illumina [130052]	N
856	chr14	35565855	35565856	rs17091786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q13.2	PPP2R3C, FAM177A1	rs17091786-T	0.199532	1E-13		0.020650152	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr14	35568787	35568788	rs8015119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q13.2	PPP2R3C, FAM177A1	rs8015119-T	0.109174	1E-19		0.03228906	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr14	35572162	35572163	rs111778408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	14q13.2	PPP2R3C, FAM177A1	rs111778408-A	0.1097	1E-10		0.03693594	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr14	35572356	35572357	rs2143950	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	14q13.2	PPP2R3C	rs2143950-T	0.17	9E-10	(random effects)		NR	Illumina [15539996] (imputed)	N
856	chr14	35572356	35572357	rs2143950	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	14q13.2	PPP2R3C	rs2143950-T	0.17	2E-15	(EA, fixed effects)	1.08	[1.06-1.10]	Illumina [15539996] (imputed)	N
856	chr14	35577800	35577801	rs57075379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q13.2	PPP2R3C, FAM177A1	rs57075379-G	0.166991	9E-21		0.027978797	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr14	35581147	35581148	rs72664816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q13.2		rs72664816-T	NR	3E-12		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
856	chr14	35581150	35581151	rs1980513	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	14q13.2	FAM177A1	rs1980513-T	0.0769	5E-6	(EA)	0.0366	[0.021-0.052] unit increase	Affymetrix, Illumina [NR] (imputed)	N
856	chr14	35585628	35585629	rs72664829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q13.2		rs72664829-?	NR	2E-11				NR [~ 8900000] (imputed)	N
856	chr14	35596322	35596323	rs72664840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q13.2	KIAA0391	rs72664840-T	0.178305	6E-15		0.022584517	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
856	chr14	35596604	35596604	rs770250902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q13.2	NR	rs770250902-D	0.178508	2E-18		0.023369	[0.018-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
856	chr14	35596604	35596604	rs770250902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q13.2	NR	rs770250902-D	0.178515	2E-18		0.023602	[0.018-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
856	chr14	35599690	35599691	rs58327846	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q13.2	NR	rs58327846-C	0.3512	4E-6	(EA)	0.0311	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
856	chr14	35600021	35600022	rs11621710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	14q13.2	KIAA0391	rs11621710-A	0.4906	2E-10		0.02308818	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr14	35602086	35602087	rs17386684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q13.2	KIAA0391	rs17386684-G	0.178467	6E-16		0.023360396	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
856	chr14	35602086	35602087	rs17386684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs17386684-G	0.152276	6E-16				Affymetrix, Illumina [24649327] (imputed)	N
856	chr14	35602086	35602087	rs17386684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs17386684-G	0.163011	2E-15				Affymetrix, Illumina [23114412] (imputed)	N
856	chr14	35605875	35605876	rs4981267	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q13.2	KIAA0391	rs4981267-?		8E-6				Illumina [4322238] (imputed)	N
856	chr14	35619815	35619816	rs11156875	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q13.2	NR	rs11156875-A	NR	3E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
856	chr14	35620358	35620359	rs10150899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.2	KIAA0391	rs10150899-G	NR	1E-8		0.0240949	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
856	chr14	35628728	35628729	rs76420714	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q13.2	NA	rs76420714-T	0.9018	4E-9		0.019	[0.013-0.025] unit increase	NR [~ 27400000] (imputed)	N
856	chr14	35630174	35630175	rs6571696	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q13.2	KIAA0391	rs6571696-G	NR	9E-9		0.0170081	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
856	chr14	35630468	35630469	rs74043845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q13.2	NR	rs74043845-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
856	chr14	35630468	35630469	rs74043845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q13.2		rs74043845-?	NR	2E-10				NR [~ 8900000] (imputed)	N
856	chr14	35631293	35631294	rs10146133	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	14q13.2		rs10146133-?	NR	2E-6		0.8101804	[0.47-1.15] unit increase	Illumina [9842460] (imputed)	N
856	chr14	35638936	35638937	rs2415269	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	14q13.2		rs2415269-A	0.2731	3E-12		0.92		Affymetrix, Illumina [9397031] (imputed)	N
856	chr14	35639119	35639120	rs12436663	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	14q13.2	MRPP3	rs12436663-?	NR	6E-8	(Recessive model)	1.54	unit decrease	Illumina [542562]	N
856	chr14	35646404	35646405	rs199892962	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	14q13.2		rs199892962-AT	NR	4E-6		0.198217	[0.11-0.28] unit increase	NR [5275424] (imputed)	N
856	chr14	35649430	35649431	rs7141912	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q13.2	KIAA0391	rs7141912-A	0.873721	1E-8		0.0118214	[0.0078-0.0159] unit increase	Affymetrix [12370749]	N
857	chr14	35654466	35654467	rs12586305	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	14q13.2	NR	rs12586305-t	0.841	8E-11		0.91	[0.89-0.94]	Affymetrix, Illumina [16201029] (imputed)	N
857	chr14	35659170	35659171	rs10444669	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	14q13.2		rs10444669-?	NR	5E-7				Affymetrix [11524071] (imputed)	N
857	chr14	35673469	35673470	rs9806058	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q13.2	NR	rs9806058-?	NR	2E-8	(male)	0.2939	[0.19-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
857	chr14	35673469	35673470	rs9806058	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q13.2	NR	rs9806058-?	NR	2E-7		0.17408	[0.11-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
857	chr14	35682171	35682172	rs12586317	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	14q13.2	NFKBIA	rs12586317-T	NR	4E-9		1.1904762	[1.16-1.23]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
857	chr14	35682171	35682172	rs12586317	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	14q13.2	PSMA6, NFKBIA	rs12586317-T	0.75	2E-8		1.15	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
857	chr14	35736272	35736273	rs2295463	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	14q13.2	KIAA0391	rs2295463-?		3E-8	(Adalimumab)	0.84	[0.55-1.13] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
857	chr14	35740940	35740941	rs2899832	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	14q13.2	MRPP3	rs2899832-?	NR	6E-6	(Recessive model)	1.47	unit decrease	Illumina [542562]	N
857	chr14	35761674	35761675	rs1048990	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	14q13.2	PSMA6	rs1048990-G	0.16	1E-8		1.039	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
857	chr14	35762990	35762991	rs78426265	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	14q13.2	NFKBIA	rs78426265-T	0.1635	3E-9		1.139	[1.093-1.188]	Affymetrix [15688218] (imputed)	N
857	chr14	35771189	35771190	rs11285398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q13.2		rs11285398-A	NR	2E-9		0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
858	chr14	35797121	35797122	rs10137488	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	14q13.2	NR	rs10137488-C	0.02669699999999997	2E-8		0.0532906	[0.035-0.072] unit increase	Affymetrix [16577424] (imputed)	N
858	chr14	35797878	35797879	rs111749255	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q13.2	NR	rs111749255-G	0.919992	2E-7		1.0741138	[1.05-1.1]	Affymetrix [7791636] (imputed)	N
858	chr14	35808261	35808262	rs10162508	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	14q13.2	PSMA6, NFKBIA	rs10162508-?	NR	3E-11		0.03118	[0.022-0.04] unit increase novel	Illumina [6108953] (imputed)	N
858	chr14	35811698	35811699	rs4981285	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q13.2	RP11-561B11.3	rs4981285-T	NR	2E-8		0.0160755	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
858	chr14	35813501	35813502	rs74780291	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-390 sp003523225 abundance in stool	5,959 Finnish ancestry individuals	NA	14q13.2		rs74780291-A	0.046623	4E-8		0.119731	[0.077-0.162] unit increase	Illumina [7980478] (imputed)	N
858	chr14	35828197	35828198	rs4981287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q13.2		rs4981287-?	NR	4E-13				NR [~ 8900000] (imputed)	N
858	chr14	35828740	35828741	rs12879003	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	14q13.2	NFKBIA	rs12879003-?	NR	3E-7	(subset analysis)			Illumina [130052]	N
858	chr14	35830113	35830114	rs10140922	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q13.2	NFKBIA	rs10140922-T	0.4194	5E-11	(EA)	0.0301	[0.021-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
858	chr14	35830113	35830114	rs10140922	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q13.2	NFKBIA	rs10140922-T	0.4194	3E-9	(EA, women)	0.0336	[0.022-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
858	chr14	35832665	35832666	rs8016947	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	14q13.2	NR	rs8016947-G		9E-14		1.08		NR [8016731] (imputed)	N
858	chr14	35832665	35832666	rs8016947	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	14q13.2	PSMA6, NFKBIA	rs8016947-G	0.555	5E-6	(Chinese)	1.26	[1.14-1.39]	Illumina [up to 4778154] (imputed)	N
858	chr14	35832665	35832666	rs8016947	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	14q13.2	PSMA6, NFKBIA	rs8016947-G	0.553	3E-6	(EA)	1.16	[1.09-1.24]	Illumina [up to 4778154] (imputed)	N
858	chr14	35832665	35832666	rs8016947	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	14q13.2	PSMA6, NFKBIA	rs8016947-G	0.553	2E-10		1.19	[1.13-1.25]	Illumina [up to 4778154] (imputed)	N
858	chr14	35832665	35832666	rs8016947	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	14q13.2	NFKBIA	rs8016947-G	0.564	3E-17		1.16		Illumina [111236] (imputed)	N
858	chr14	35832665	35832666	rs8016947	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	14q13.2	NFKBIA	rs8016947-C	0.57	2E-11		1.19	[1.11-1.27]	Illumina [535475]	N
858	chr14	35839235	35839236	rs2145623	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	14q13.2	NFKBIA	rs2145623-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
858	chr14	35852485	35852486	rs12884468	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs12884468-C	NR	2E-12		1.08	NR	NR [8016731] (imputed)	N
858	chr14	35852485	35852486	rs12884468	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls		NFKBIA	rs12884468-G	NR	3E-11		1.159	NR	Illumina [up to 11532644] (imputed)	N
858	chr14	35852485	35852486	rs12884468	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls		NFKBIA	rs12884468-?		1E-8		1.14	[1.11-1.16]	Illumina [87827]	N
858	chr14	35852485	35852486	rs12884468	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA		NFKBIA	rs12884468-?	NR	9E-9	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
858	chr14	35856347	35856348	rs2013724	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	14q13.2	NR	rs2013724-A	0.2644	2E-8		1.039	[1.026-1.053]	Affymetrix [15688218] (imputed)	N
858	chr14	35856347	35856348	rs2013724	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	14q13.2	NR	rs2013724-?	NR	1E-8			NR	Affymetrix [15688218] (imputed)	N
858	chr14	35857713	35857714	rs75426604	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	14q13.2	NR	rs75426604-C	NR	3E-6		0.1366	[0.08-0.194] SD units increase	NR [10700000] (imputed)	N
858	chr14	35861799	35861800	rs111597524	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	14q13.2	NFKBIA	rs111597524-?		5E-9		1.18	[1.12-1.24]	Illumina [NR] (imputed)	N
858	chr14	35864877	35864878	rs10131567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q13.2		rs10131567-T	0.284987	1E-14		0.01917269	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr14	35864877	35864878	rs10131567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	14q13.2		rs10131567-?	NR	4E-10				NR [~ 8900000] (imputed)	N
858	chr14	35871092	35871093	rs696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	14q13.2		rs696-C	0.637	3E-17				Affymetrix [10369434] (imputed)	N
858	chr14	35871092	35871093	rs696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q13.2	NFKBIA	rs696-T	0.362993	4E-15		0.018097406	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
858	chr14	35871092	35871093	rs696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q13.2	NFKBIA	rs696-T	0.362994	1E-24		0.023862628	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
858	chr14	35871092	35871093	rs696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs696-T	0.362453	2E-36				Affymetrix, Illumina [23472807] (imputed)	N
858	chr14	35871092	35871093	rs696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q13.2	NR	rs696-T	0.364762	5E-38		0.025359	[0.022-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
858	chr14	35871092	35871093	rs696	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q13.2	NFKBIA	rs696-C	0.6309	2E-10		0.4438	[0.31-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
858	chr14	35871092	35871093	rs696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q13.2		rs696-?	NR	4E-13				NR [~ 8900000] (imputed)	N
858	chr14	35871092	35871093	rs696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	14q13.2		rs696-?	NR	2E-11				NR [~ 8900000] (imputed)	N
858	chr14	35871092	35871093	rs696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	14q13.2	NFKBIA	rs696-T	0.3633	5E-13		0.0270596	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35871216	35871217	rs8904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q13.2		rs8904-A	NR	3E-12		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
858	chr14	35871216	35871217	rs8904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q13.2		rs8904-A	NR	8E-9		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
858	chr14	35871216	35871217	rs8904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q13.2		rs8904-A	NR	2E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
858	chr14	35871216	35871217	rs8904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q13.2		rs8904-A	NR	1E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
858	chr14	35871216	35871217	rs8904	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q13.2	NFKBIA	rs8904-A	0.363	2E-15		0.0157	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
858	chr14	35871216	35871217	rs8904	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q13.2	NFKBIA	rs8904-G	0.63	2E-9		0.4	[0.26-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
858	chr14	35871216	35871217	rs8904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q13.2		rs8904-?	NR	7E-13				NR [~ 8900000] (imputed)	N
858	chr14	35871216	35871217	rs8904	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q13.2	NFKBIA	rs8904-A	0.4023	2E-10		0.2118	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
858	chr14	35871216	35871217	rs8904	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q13.2	NFKBIA	rs8904-A	0.4011	5E-12		0.1714	[0.12-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
858	chr14	35871216	35871217	rs8904	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	14q13.2	NFKBIA	rs8904-A	0.375	7E-7	(EA, initial)	0.377	[0.23-0.53] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
858	chr14	35871216	35871217	rs8904	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	14q13.2	NFKBIA	rs8904-A	0.375	1E-12		0.311	[0.22-0.4] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
858	chr14	35871216	35871217	rs8904	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q13.2	NFKBIA	rs8904-G		4E-11		0.259	unit decrease	Affymetrix [at least 2696785] (imputed)	N
858	chr14	35871216	35871217	rs8904	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q13.2	NFKBIA	rs8904-G		2E-10		0.167	unit decrease	Affymetrix [at least 2696785] (imputed)	N
858	chr14	35881966	35881966	rs34332679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q13.2		rs34332679-GA	NR	3E-17		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
858	chr14	35881966	35881966	rs34332679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q13.2		rs34332679-GA	0.643557	3E-24		0.023681803	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
858	chr14	35881966	35881966	rs34332679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q13.2		rs34332679-GA	0.64356	9E-28		0.025475282	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
858	chr14	35881966	35881966	rs34332679	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	14q13.2	NFKBIA	rs34332679-GA	0.64	6E-11				NR [> 9500000] (imputed)	N
858	chr14	35881966	35881966	rs34332679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q13.2	intergenic	rs34332679-GA	0.6434	1E-12		0.02673784	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35881966	35881966	rs34332679	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q13.2	intergenic	rs34332679-GA	0.6434	9E-14		0.02791439	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35882491	35882492	rs8020739	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	14q13.2		rs8020739-G	0.357	2E-11				Affymetrix [10369434] (imputed)	N
858	chr14	35882491	35882492	rs8020739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs8020739-T	0.649449	8E-32				Affymetrix, Illumina [19872809] (imputed)	N
858	chr14	35882491	35882492	rs8020739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q13.2	NR	rs8020739-T	0.64383	3E-32		0.02471	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
858	chr14	35882491	35882492	rs8020739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	14q13.2		rs8020739-?	NR	4E-8				NR [~ 8900000] (imputed)	N
858	chr14	35882491	35882492	rs8020739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q13.2		rs8020739-?	NR	5E-25				NR [~ 8900000] (imputed)	N
858	chr14	35882491	35882492	rs8020739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	14q13.2	intergenic	rs8020739-T	0.6429	3E-9		0.02223488	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35882491	35882492	rs8020739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	14q13.2	intergenic	rs8020739-T	0.643	3E-12		0.02611942	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35882491	35882492	rs8020739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	14q13.2	intergenic	rs8020739-T	0.643	1E-10		0.02412099	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
858	chr14	35882934	35882935	rs2007960	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	14q13.2	NFKBIA	rs2007960-T	0.6061030000000001	7E-11		1.0409938	[1.02849473767269-1.05364468199319]	NR [9572556] (imputed)	N
858	chr14	35885040	35885041	rs17103286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	14q13.2	NR	rs17103286-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
858	chr14	35885040	35885041	rs17103286	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	14q13.2	NFKBIA, INSM2	rs17103286-G	0.521	4E-7		1.038	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
858	chr14	35885040	35885041	rs17103286	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	14q13.2	NFKBIA, INSM2	rs17103286-G	NR	1E-9		1.042	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
858	chr14	35889522	35889523	rs12434023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q13.2		rs12434023-?	NR	2E-14				NR [~ 8900000] (imputed)	N
860	chr14	36050216	36050217	rs77406312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q13.2	NR	rs77406312-C	0.086878	2E-18		0.029025	[0.023-0.036] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
860	chr14	36050216	36050217	rs77406312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q13.2	NR	rs77406312-C	0.08692	2E-20		0.030774	[0.024-0.037] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
860	chr14	36081513	36081514	rs143750014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	14q13.2	RALGAPA1	rs143750014-A	NR	1E-9		0.0902669	[0.061-0.119] unit decrease	Affymetrix [323858] (imputed)	N
860	chr14	36096361	36096362	rs140406088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.2	RALGAPA1	rs140406088-A	NR	4E-8		0.0782001	[0.05-0.106] unit decrease	Affymetrix [323123] (imputed)	N
860	chr14	36099365	36099366	rs113670117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q13.2		rs113670117-T	NR	2E-10		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
860	chr14	36099365	36099366	rs113670117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q13.2		rs113670117-T	NR	4E-15		0.0262	[0.02-0.033] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
860	chr14	36099365	36099366	rs113670117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q13.2		rs113670117-T	NR	4E-14		0.0259	[0.019-0.033] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
860	chr14	36099365	36099366	rs113670117	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q13.2	RALGAPA1	rs113670117-C	0.91189	3E-12		0.00292996	[0.0021-0.0037] unit increase	Affymetrix [13995440] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q13.2	RALGAPA1	rs113670117-T	0.088208	4E-11		0.025645845	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q13.2	RALGAPA1	rs113670117-T	0.088237	5E-9		0.022898855	[0.015-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q13.2	RALGAPA1	rs113670117-T	0.088204	7E-16		0.031424902	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q13.2	RALGAPA1	rs113670117-T	0.088214	1E-17		0.033303034	[0.026-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs113670117-T	0.0854998	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q13.2	NR	rs113670117-T	0.087896	5E-15		0.025658	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs113670117-T	0.0855393	4E-16				Affymetrix, Illumina [24653286] (imputed)	N
860	chr14	36099365	36099366	rs113670117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.2	NR	rs113670117-T	0.0855771	6E-18				Affymetrix, Illumina [24558453] (imputed)	N
860	chr14	36099365	36099366	rs113670117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q13.2		rs113670117-?	NR	2E-15				NR [~ 8900000] (imputed)	N
860	chr14	36147011	36147012	rs1957830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q13.2		rs1957830-?	NR	2E-9				NR [~ 8900000] (imputed)	N
860	chr14	36158827	36158828	rs7155504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q13.2		rs7155504-?	NR	3E-9				NR [~ 8900000] (imputed)	N
861	chr14	36213441	36213442	rs148114321	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q13.2	NR	rs148114321-T	NR	9E-6		1.2	[NR]	Illumina [7158791] (imputed)	N
861	chr14	36220875	36220876	rs112957890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q13.2		rs112957890-G	NR	8E-9		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
861	chr14	36220875	36220876	rs112957890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q13.2		rs112957890-?	NR	3E-21				NR [~ 8900000] (imputed)	N
862	chr14	36358237	36358238	rs77052388	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	14q13.2	NR	rs77052388-T	NR	5E-6	(AA)	0.168044	[0.096-0.24] unit increase	Affymetrix [up to 6007810] (imputed)	N
862	chr14	36378202	36378203	rs529699157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Meniere's disease	1,526 European ancestry cases, 481,248 European ancestry controls, 1,290 East Asian ancestry cases, 177,436 East Asian ancestry controls	NA	14q13.2		rs529699157-T	NR	2E-8		2.9608	[1.93-4] unit increase	Affymetrix, Illumina [25844443] (imputed)	N
862	chr14	36378202	36378203	rs529699157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Meniere's disease	1,290 East Asian ancestry cases, 177,436 East Asian ancestry controls	NA	14q13.2		rs529699157-T	0.002725877	2E-8		2.9608433	[1.93-4] unit increase	Illumina [13429980] (imputed)	N
862	chr14	36382800	36382801	rs7148335	30563176	Westermair AL	2018-12-05	Biomolecules	Association of Genetic Variation at AQP4 Locus with Vascular Depression.	Severe depressive disorders in coronary artery disease	78 European ancestry cases, 264 European ancestry controls	NA	14q13.2	NR	rs7148335-G	0.08	5E-6		2.9411764	[1.79-5]	Affymetrix [6341066] (imputed)	N
862	chr14	36397679	36397680	rs1168987	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	14q13.2	intergenic	rs1168987-A	NR	5E-6		2.27	[0.31-0.63]	Illumina [326385]	N
863	chr14	36477953	36477954	rs11851309	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	14q13.2	NR	rs11851309-T	0.38	3E-7		0.89	NR	Affymetrix, Illumina [6957974] (imputed)	N
863	chr14	36502542	36502543	rs7159802	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	14q13.2		rs7159802-G	0.1741	8E-6		1.551	[1.28-1.879]	Affymetrix [7975321] (imputed)	N
863	chr14	36532575	36532576	rs368187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q13.2		rs368187-C	NR	2E-17		0.2031	[0.16-0.25] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
863	chr14	36532575	36532576	rs368187	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	14q13.2	NR	rs368187-G	0.63	4E-13		1.47	[1.32-1.63]	Illumina [9673063] (imputed)	N
863	chr14	36532575	36532576	rs368187	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	14q13.2	NR	rs368187-G	0.581	5E-23		1.39	1.30-1.47	Illumina [7100000] (imputed)	N
863	chr14	36559530	36559531	rs34081947	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	14q13.2	NKX2-1	rs34081947-T	0.41	2E-6		1.25	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
863	chr14	36559530	36559531	rs34081947	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	14q13.2	NKX2-1	rs34081947-T	0.41	1E-7		1.27	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
864	chr14	36569519	36569520	rs11156905	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q13.3	LINC00609	rs11156905-A	0.623382768898146	4E-21		0.0441	[0.035-0.053] SD decrease	Illumina [22400000] (imputed)	N
864	chr14	36574017	36574018	rs1537424	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	14q13.3	MBIP	rs1537424-T	0.608	1E-8	(TSH)	0.052	[0.034-0.07] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
864	chr14	36588962	36588963	rs12881152	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	14q13.3	LINC00609	rs12881152-T	0.326337143	1E-6		0.142633	[0.085-0.2] unit decrease	Illumina [6969139] (imputed)	N
864	chr14	36588962	36588963	rs12881152	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	14q13.3	NR	rs12881152-?		9E-6				Illumina [up to 6969139] (imputed)	N
864	chr14	36640600	36640601	rs1169151	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	14q13.3	PTCSC3	rs1169151-G	0.419	5E-8		0.1197	[0.077-0.163] kg increase	Affymetrix [at least 17000000] (imputed)	N
864	chr14	36649245	36649246	rs944289	19198613	Gudmundsson J	2009-02-06	Nat Genet	Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations.	Thyroid cancer	192 European ancestry cases, 37,196 European ancestry controls	432 European ancestry cases, 1,727 European ancestry controls	14q13.3	NKX2-1	rs944289-T	0.57	2E-9		1.37	[1.24-1.52]	Illumina [304083]	N
864	chr14	36670114	36670115	rs17553276	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	14q13.3		rs17553276-?	NR	3E-6		1.35317	[1.23-1.48]	NR [674885]	N
865	chr14	36713153	36713154	rs2254613	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Hypertension	8,842 Korean ancestry individuals	NA	14q13.3	MBIP	rs2254613-?		7E-6				NR [327872]	N
865	chr14	36728530	36728531	rs2761336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q13.3		rs2761336-?	NR	3E-11				NR [~ 8900000] (imputed)	N
865	chr14	36738360	36738361	rs116909374	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	14q13.3	NR	rs116909374-C	0.94	2E-10		0.43	[0.33-0.55]	Illumina [9673063] (imputed)	N
865	chr14	36738360	36738361	rs116909374	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q13.3	PTCSC3, MBIP	rs116909374-T	0.0347963275296165	8E-30		0.1692	[0.14-0.2] SD decrease	Illumina [22400000] (imputed)	N
865	chr14	36738360	36738361	rs116909374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	14q13.3		rs116909374-?	NR	3E-8				NR [~ 8900000] (imputed)	N
865	chr14	36738360	36738361	rs116909374	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	14q13.3	NR	rs116909374-T	0.034	1E-16		1.81	1.57-2.08	Illumina [7100000] (imputed)	N
865	chr14	36738360	36738361	rs116909374	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	14q13.3	MBIP	rs116909374-T	0.043	5E-11		0.208	[0.15-0.27] unit decrease	Illumina [at least 9558836] (imputed)	N
865	chr14	36738360	36738361	rs116909374	22267200	Gudmundsson J	2012-01-22	Nat Genet	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	14q13.3	MBIP	rs116909374-T	0.017	5E-11		2.09	[1.68-2.60]	Illumina [~ 16000000] (imputed)	N
865	chr14	36754890	36754891	rs4900716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q13.3	Intergenic	rs4900716-A	0.0638	1E-8	(MTAG)	0.0154	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
865	chr14	36755982	36755983	rs9788479	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q13.3		rs9788479-C	0.062	5E-8		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
866	chr14	36854135	36854136	rs12590640	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	14q13.3	NR	rs12590640-T	NR	4E-6		1.15	[1.09-1.23]	Illumina [1300000] (imputed)	N
866	chr14	36870341	36870342	rs117059939	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	14q13.3	chr14mb36	rs117059939-T	0.013699408	3E-7		0.7517	[0.46-1.04] unit decrease	Affymetrix [~ 9800000] (imputed)	N
866	chr14	36899645	36899646	rs559651557	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	14q13.3	SFTA3	rs559651557-C	2.3E-4	3E-8		2.67	[1.72-3.62]	NR [10849711] (imputed)	N
867	chr14	36980699	36980700	rs11626201	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	14q13.3	NR	rs11626201-C		2E-6		0.1162	[0.068-0.164] SD units decrease	NR [10700000] (imputed)	N
867	chr14	36984398	36984399	rs4548774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.3	RP11-896J10.3	rs4548774-C	NR	3E-8		0.017526	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
867	chr14	36989418	36989419	rs2076751	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	14q13.3	NKX2-1	rs2076751-C	0.75	2E-15				Illumina [at least 532488] (imputed)	N
867	chr14	36989418	36989419	rs2076751	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	14q13.3	NKX2-1	rs2076751-C	0.75	1E-11	(japanese)	0.07	[0.05-0.09] year increase	Illumina [at least 532488] (imputed)	N
867	chr14	36989418	36989419	rs2076751	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	14q13.3	NKX2-1	rs2076751-A	0.23377	7E-6		0.087	[0.049-0.125] year decrease	Illumina [2310762] (imputed)	N
867	chr14	36989595	36989596	rs56249733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q13.3		rs56249733-G	NR	3E-26		0.0138	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
867	chr14	36994397	36994398	rs11623992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q13.3	NKX2-1-AS1	rs11623992-T	NR	6E-10		0.0191476	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
867	chr14	36994708	36994709	rs11628208	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q13.3	NKX2-1-AS1	rs11628208-A	NR	4E-9		5.905	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
867	chr14	36994801	36994802	rs17176043	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	14q13.3	intergenic	rs17176043-A	0.946	7E-6		0.043	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
867	chr14	36998949	36998950	rs12895406	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	14q13.3		rs12895406-A	NR	3E-10		0.020527372	[0.014-0.027] years increase	NR [7400000] (imputed)	N
867	chr14	37000048	37000049	rs17104630	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	14q13.3	NKX2-1	rs17104630-G	0.04	8E-6		0.42	[0.61-1.10] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
867	chr14	37001925	37001926	rs35539723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q13.3	Intergenic	rs35539723-A	0.588	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
867	chr14	37001925	37001926	rs35539723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q13.3	Intergenic	rs35539723-A	0.5922	5E-10	(MTAG)	0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
867	chr14	37002134	37002135	rs11622558	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q13.3	NR	rs11622558-T	NR	6E-10		6.2	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
867	chr14	37003837	37003838	rs12433775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q13.3		rs12433775-?	NR	3E-8				NR [~ 8900000] (imputed)	N
867	chr14	37004548	37004549	rs4899401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q13.3	PHKBP2	rs4899401-A	NR	1E-9		0.0189571	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
867	chr14	37008148	37008149	rs1951167	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q13.3	NR	rs1951167-A	NR	2E-8		5.575	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
867	chr14	37008148	37008149	rs1951167	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q13.3	PHKBP2	rs1951167-A	NR	3E-8		5.519	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
867	chr14	37014075	37014076	rs12885642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q13.3		rs12885642-C	0.373752	3E-15		0.0164653	[0.012-0.021] unit decrease	Illumina [13479295] (imputed)	N
867	chr14	37014075	37014076	rs12885642	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q13.3	NKX2-1-AS1, NKX2-8	rs12885642-?	NR	2E-15		0.02349339	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
867	chr14	37016367	37016368	rs2038506	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q13.3	Intergenic	rs2038506-A	0.1477	5E-8	(MTAG)	0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
867	chr14	37028045	37028046	rs10047954	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q13.3		rs10047954-?	NR	2E-9				NR [7857346] (imputed)	N
867	chr14	37030244	37030245	rs7159131	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q13.3	RPL29P3	rs7159131-A	NR	3E-8		0.017337522	[0.011-0.023] unit decrease	Affymetrix [NR]	N
867	chr14	37035011	37035012	rs77290882	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	14q13.3	SLC25A21	rs77290882-A	0.05	1E-6		0.268	[0.161-0.375] unit decrease	Affymetrix [7519176] (imputed)	N
867	chr14	37038309	37038310	rs7144325	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	14q13.3	RPL29P3	rs7144325-?	NR	7E-6		0.095	[0.056-0.134] unit decrease	Illumina [6319684] (imputed)	N
867	chr14	37042458	37042459	rs11628556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q13.3	RPL29P3	rs11628556-A	NR	3E-8		0.0172724	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
867	chr14	37045491	37045492	rs11623436	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	14q13.3	NR	rs11623436-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
867	chr14	37054589	37054590	rs1007731	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q13.3		rs1007731-A	0.1159	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
867	chr14	37054589	37054590	rs1007731	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q13.3	Intergenic	rs1007731-A	0.1159	1E-12	(MTAG)	0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
867	chr14	37058608	37058609	rs11624322	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	14q13.3	NR	rs11624322-?	0.37	4E-7		1.51	[1.29-1.77]	Affymetrix, Illumina [~ 6000000] (imputed)	N
868	chr14	37127409	37127410	rs12885612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	14q13.3		rs12885612-A	NR	8E-9		0.069	[0.045-0.093] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
868	chr14	37132768	37132769	rs2236007	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	14q13.3		rs2236007-G	NR	2E-9		1.0873	NR	Affymetrix [7846216] (imputed)	N
868	chr14	37132768	37132769	rs2236007	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q13.3		rs2236007-A	NR	1E-25		0.93	[0.92-0.94]	Affymetrix, Illumina [NR] (imputed)	N
868	chr14	37132768	37132769	rs2236007	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q13.3	PAX9	rs2236007-G	0.79	4E-21	(EA)	1.0752687	[1.05-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
868	chr14	37132768	37132769	rs2236007	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	14q13.3	NR	rs2236007-G	0.79	5E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 14000000] (imputed)	N
868	chr14	37132768	37132769	rs2236007	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	14q13.3	NR	rs2236007-G	0.79	9E-13		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
868	chr14	37132768	37132769	rs2236007	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q13.3	PAX9, SLC25A21	rs2236007-G	0.79	2E-13		1.08	[1.05-1.1]	Affymetrix, Illumina [~ 2600000] (imputed)	N
868	chr14	37136193	37136194	rs6571758	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q13.3	NR	rs6571758-G	NR	3E-19		1.063	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
868	chr14	37136544	37136545	rs7149262	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q13.3	NR	rs7149262-A	0.2113	2E-21	(EA)	0.0724	[0.058-0.087] unit decrease	Illumina [~ 11800000] (imputed)	N
868	chr14	37138293	37138294	rs11629412	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	14q13.3	PAX9	rs11629412-C	0.58	2E-12		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
868	chr14	37144515	37144516	rs10131337	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q13.3	NR	rs10131337-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
868	chr14	37144515	37144516	rs10131337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q13.3		rs10131337-?	NR	1E-25				NR [~ 8900000] (imputed)	N
868	chr14	37144515	37144516	rs10131337	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q13.3	PAX9	rs10131337-T	0.2416	2E-6		0.0354	[0.021-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
868	chr14	37149792	37149793	rs17104988	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	14q13.3	NR	rs17104988-?		3E-6				Illumina [892589]	N
868	chr14	37152349	37152350	rs8003014	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	14q13.3		rs8003014-?	NR	5E-6		1.0682	[1.04-1.1]	NR [682398]	N
868	chr14	37152349	37152350	rs8003014	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q13.3	SLC25A21	rs8003014-?	NR	7E-15		0.022323117	[0.017-0.028] unit increase	Illumina [27896057] (imputed)	N
868	chr14	37209697	37209698	rs1950357	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	14q13.3	PAX9, NKX2-8	rs1950357-?	NR	3E-66				Illumina [at least 7383741] (imputed)	N
868	chr14	37209697	37209698	rs1950357	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	14q13.3	PAX9, NKX2-8	rs1950357-?	NR	5E-9				Illumina [at least 7383741] (imputed)	N
869	chr14	37239146	37239147	rs730643	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	14q13.3	PAX9	rs730643-A	0.662	3E-16		1.3513513	NR	Illumina [at least 870261] (imputed)	N
869	chr14	37277642	37277643	rs848087	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q13.3	NR	rs848087-G	0.5682	6E-11	(EA)	0.0427	[0.03-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
869	chr14	37335712	37335713	rs74315875	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	14q13.3	SLC25A21	rs74315875-G	0.033	3E-9	(AA)	0.116	[0.079-0.153] unit increase	Affymetrix [at least 897981] (imputed)	N
869	chr14	37350478	37350479	rs78007224	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	14q13.3	NR	rs78007224-T		2E-6		0.3126	[0.18-0.44] unit decrease	Illumina [12770451] (imputed)	N
870	chr14	37357411	37357412	rs17177725	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	14q13.3	Intergenic	rs17177725-?		8E-6		1.6447369	[NR]	Affymetrix [492217] (imputed)	N
870	chr14	37446602	37446603	rs60724295	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q13.3	SLC25A21	rs60724295-A	0.912	7E-6		0.059	[0.034-0.084] unit decrease	Affymetrix [7947838] (imputed)	N
870	chr14	37462756	37462757	rs911009	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q13.3	MIPOL1	rs911009-?	NR	7E-6	(PC 38:6)	0.30541724	[0.17-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
871	chr14	37486925	37486926	rs117686586	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q13.3	NR	rs117686586-C	0.0122	1E-8	(RBP1)	0.06462	NR unit increase	Illumina [1671387] (imputed)	N
871	chr14	37513151	37513151	rs59081965	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	14q13.3		rs59081965-TC	0.336678201	7E-9				Illumina [7417619] (imputed)	N
871	chr14	37521516	37521517	rs35215132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q13.3		rs35215132-?	NR	1E-12				NR [~ 8900000] (imputed)	N
871	chr14	37537351	37537352	rs10133673	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	14q13.3	NR	rs10133673-G	0.24	1E-6		1.17		Illumina [803202]	N
871	chr14	37571941	37571942	rs57810692	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q13.3	NR	rs57810692-A	0.02613	2E-8	(SND1)	0.213	NR unit increase	Illumina [1671387] (imputed)	N
871	chr14	37604314	37604315	rs35130743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q13.3	SLC25A21	rs35130743-C	0.267752	2E-14		0.019410465	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr14	37623674	37623676	rs57438482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q13.3	SLC25A21	rs57438482-A	0.296313	2E-30		0.028059429	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
872	chr14	37623674	37623676	rs57438482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q13.3	SLC25A21	rs57438482-A	0.29639	6E-39		0.0309467	[0.027-0.035] unit increase	Affymetrix [93095623] (imputed)	N
872	chr14	37623674	37623676	rs57438482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q13.3	SLC25A21	rs57438482-A	0.296422	3E-35		0.029989658	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
872	chr14	37644791	37644792	rs8018493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q13.3	SLC25A21	rs8018493-G	0.267487	2E-10		0.016100459	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr14	37644791	37644792	rs8018493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q13.3	SLC25A21	rs8018493-G	0.267489	8E-12		0.017238375	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr14	37644791	37644792	rs8018493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q13.3	SLC25A21	rs8018493-G	0.267502	3E-15		0.019902434	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr14	37648272	37648273	rs12895578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	14q13.3		rs12895578-A	0.367109	5E-8		0.020839	[0.013-0.028] unit increase	Illumina [13476299] (imputed)	N
872	chr14	37660201	37660202	rs117137044	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q13.3	NR	rs117137044-?	NR	5E-8		0.0791	[0.051-0.108] unit decrease	Illumina [at least 560000] (imputed)	N
872	chr14	37660201	37660202	rs117137044	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Cranial base width	2,447 European ancestry individuals	671 European ancestry individuals	14q13.3	Intergenic	rs117137044-A	0.1066	1E-7		1.058	[0.66-1.46] unit decrease	Illumina [34985077] (imputed)	N
872	chr14	37677426	37677427	rs8015022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.3	NR	rs8015022-A	0.265905	4E-46				Affymetrix, Illumina [24246363] (imputed)	N
872	chr14	37677426	37677427	rs8015022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q13.3	NR	rs8015022-A	0.285709	2E-48		0.0294	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
872	chr14	37685085	37685086	rs34138206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.3	NR	rs34138206-A	0.262275	2E-20				Affymetrix, Illumina [24332387] (imputed)	N
872	chr14	37687662	37687663	rs10135427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	14q13.3		rs10135427-T	0.492096	2E-9		0.0215371	[0.014-0.029] unit decrease	Illumina [13476266] (imputed)	N
872	chr14	37688129	37688131	rs150658949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q13.3	MIPOL1	rs150658949-C	0.287317	1E-40		0.03322218	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
872	chr14	37688129	37688131	rs150658949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q13.3	MIPOL1	rs150658949-C	0.2879	3E-14		0.02967789	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
872	chr14	37688129	37688131	rs150658949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q13.3	MIPOL1	rs150658949-C	0.2879	8E-15		0.03036032	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
872	chr14	37692863	37692864	rs8012643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.3	NR	rs8012643-T	0.264144	3E-41				Affymetrix, Illumina [20825802] (imputed)	N
872	chr14	37692863	37692864	rs8012643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q13.3	NR	rs8012643-T	0.286004	3E-43		0.029339	[0.025-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
872	chr14	37692863	37692864	rs8012643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q13.3	NR	rs8012643-T	0.286432	2E-12		0.015461	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
872	chr14	37699543	37699544	rs61988304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q13.3	MIPOL1	rs61988304-G	0.286965	6E-11		0.01604398	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
872	chr14	37705023	37705024	rs72671718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q13.3	NR	rs72671718-G	0.283399	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
872	chr14	37708005	37708006	rs8011459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q13.3	MIPOL1	rs8011459-T	0.27289	1E-15		0.020177713	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr14	37716057	37716058	rs7143938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q13.3		rs7143938-G	NR	4E-15		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
872	chr14	37716057	37716058	rs7143938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q13.3		rs7143938-G	NR	4E-26		0.0223	[0.018-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
872	chr14	37716057	37716058	rs7143938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q13.3		rs7143938-G	NR	6E-25		0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
872	chr14	37718176	37718177	rs8018823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q13.3	NR	rs8018823-A	0.286092	5E-21		0.019334	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
872	chr14	37718176	37718177	rs8018823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q13.3		rs8018823-?	NR	2E-17				NR [~ 8900000] (imputed)	N
872	chr14	37718176	37718177	rs8018823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q13.3		rs8018823-?	NR	2E-33				NR [~ 8900000] (imputed)	N
873	chr14	37783089	37783090	rs55995849	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q13.3	NR	rs55995849-?	NR	3E-7		0.0738	[0.046-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
873	chr14	37783089	37783090	rs55995849	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Cranial base width	2,447 European ancestry individuals	671 European ancestry individuals	14q13.3	Intergenic	rs55995849-A	0.1066	1E-7		1.083	[0.68-1.48] unit decrease	Illumina [34985077] (imputed)	N
873	chr14	37785827	37785828	rs1950526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	14q13.3		rs1950526-A	NR	1E-9		0.1062	[0.072-0.14] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
874	chr14	37890432	37890433	rs1955949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q21.1		rs1955949-C	NR	2E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
874	chr14	37890432	37890433	rs1955949	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	14q21.1	NR	rs1955949-T	0.29	3E-13		0.0146	[0.011-0.019] unit increase	NR [NR]	N
874	chr14	37925119	37925120	rs1955943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q21.1		rs1955943-C	NR	1E-15		0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
874	chr14	37989269	37989270	rs12147950	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	14q21.1	MIPOL1	rs12147950-T	0.4376	4E-8		0.0529	[0.034-0.072] unit decrease	NR [7784415] (imputed)	N
874	chr14	37989883	37989884	rs143458035	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x experiences in childhood (felt loved by family member) interaction	11,465 European ancestry individuals	NA	14q21.1		rs143458035-?	NR	8E-9		2.2825	[1.51-3.06] unit decrease	Affymetrix [NR] (imputed)	N
874	chr14	38008214	38008215	rs1956438	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q21.1	MIPOL1	rs1956438-A	0.6233	2E-7		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
875	chr14	38013786	38013787	rs4898641	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	14q21.1	MIPOL1	rs4898641-G	0.06	1E-6	(mean)	4.88	z-score decrease	Illumina [866099] (imputed)	N
875	chr14	38025097	38025098	rs148131694	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q21.1	MIPOL1, FOXA1	rs148131694-T	0.44	8E-13		1.07	[1.06-1.08]	Illumina [at least 560000] (imputed)	N
875	chr14	38025097	38025098	rs148131694	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q21.1	MIPOL1, FOXA1	rs148131694-?	NR	8E-13		1.066	[1.047-1.084]	Illumina [13757430] (imputed)	N
875	chr14	38025711	38025712	rs75164522	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q21.1	MIPOL1, FOXA1	rs75164522-C	0.3141	2E-11		0.102	[0.072-0.132] unit decrease	Affymetrix [~ 11900000] (imputed)	N
875	chr14	38038467	38038468	rs17106852	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Cranial base width	2,447 European ancestry individuals	671 European ancestry individuals	14q21.1	Intergenic	rs17106852-G	0.1058	1E-8		1.104	[0.7-1.51] unit decrease	Illumina [34985077] (imputed)	N
875	chr14	38053333	38053334	rs12432697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q21.1		rs12432697-T	0.253795	5E-10		0.016114734	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr14	38053333	38053334	rs12432697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q21.1		rs12432697-?	NR	3E-14				NR [~ 8900000] (imputed)	N
875	chr14	38055444	38055445	rs4901012	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	14q21.1		rs4901012-C	0.316682	5E-15		0.0784899	[0.059-0.098] decrease	Affymetrix [11014269] (imputed)	N
875	chr14	38055444	38055445	rs4901012	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q21.1	MIPOL1, FOXA1	rs4901012-C	0.3166	4E-11		0.1	[0.07-0.13] unit decrease	Affymetrix [~ 11900000] (imputed)	N
875	chr14	38065251	38065252	rs144611453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q21.1		rs144611453-C	NR	1E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
875	chr14	38066574	38066575	rs12587630	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	14q21.1	FOXA1	rs12587630-A	0.98	7E-6	(Age 20-60 years)	2.69	[1.75-4.15]	Affymetrix, Illumina [up to 17585496] (imputed)	N
875	chr14	38077147	38077148	rs1998359	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	14q21.1	FOXA1, TTC6	rs1998359-G	0.2491	5E-8		0.0809	[0.052-0.110] unit increase	Illumina [2400000] (imputed)	N
875	chr14	38097001	38097001	rs111914382	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	14q21.1	FOXA1, TTC6	rs111914382-TG	0.27	8E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
875	chr14	38104005	38104006	rs177848	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	14q21.1	TTC6, FOXA1	rs177848-A	0.59	6E-6	(EA)	0.6	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
876	chr14	38144591	38144592	rs11849126	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q21.1	NR	rs11849126-G	NR	2E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
876	chr14	38146747	38146748	rs1951646	32869517	Sung H	2020-08-31	Mol Genet Genomic Med	Genome-wide association study of cafe-au-lait macule number in neurofibromatosis type 1.	Cafe-au-lait macule number in neurofibromatosis type1	112 European ancestry individuals	59 European ancestry individuals	14q21.1	TTC6	rs1951646-?		8E-6		0.073	[NR] unit increase	Illumina [608561]	N
876	chr14	38151254	38151255	rs61977073	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	14q21.1	TTC6	rs61977073-G	0.2228	6E-9		1.06	[1.04-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
876	chr14	38151254	38151255	rs61977073	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	14q21.1	FOXA1, TTC6	rs61977073-?	NR	4E-10		1.061	[1.041-1.080]	Illumina [12845910] (imputed)	N
876	chr14	38210285	38210286	rs74731421	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.1	C14orf25	rs74731421-A	0.993	1E-6	(AA)	0.568	NR unit increase	Illumina [NR] (imputed)	N
877	chr14	38301987	38301988	rs7142469	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q21.1	LOC101059957	rs7142469-?		3E-6				Illumina [4322238] (imputed)	N
877	chr14	38334750	38334751	rs143510029	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	14q21.1	TTC6	rs143510029-?	NR	5E-7		9.11	[3.86-21.50]	Illumina [9380034] (imputed)	N
877	chr14	38401668	38401669	rs73266512	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	14q21.1	NR	rs73266512-?	NR	5E-6		0.0747	[0.043-0.106] unit increase	Illumina [~ 7800000] (imputed)	N
878	chr14	38447091	38447092	rs12590437	26434682	Lin YJ	2015-11-01	Sci Rep	Genetic variants in PLCB4/PLCB1 as susceptibility loci for coronary artery aneurysm formation in Kawasaki disease in Han Chinese in Taiwan.	Coronary artery aneurysm in Kawasaki disease	76 Han Chinese ancestry child cases, 186 Han Chinese ancestry child controls	NA	14q21.1	FOXA1, SSTR1, LOC100652860	rs12590437-?	NR	9E-6		4.009	[NR]	Affymetrix [906600]	N
879	chr14	38641705	38641706	rs2803904	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	14q21.1	intergenic	rs2803904-C	0.5791	5E-6	(Case/control)	0.2574	[0.15-0.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
879	chr14	38652716	38652717	rs2257050	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q21.1	NR	rs2257050-?	NR	2E-6				Affymetrix [NR]	N
880	chr14	38683260	38683261	rs11622412	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	14q21.1	SSTR1, CLEC14A	rs11622412-T		5E-8		0.323	unit increase	Illumina [5767231] (imputed)	N
880	chr14	38782341	38782342	rs35372009	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	14q21.1	CLEC14A, LINC00639	rs35372009-?	NR	9E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
880	chr14	38782341	38782342	rs35372009	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	14q21.1	CLEC14A, LINC00639	rs35372009-?	NR	3E-6				Affymetrix [5045527] (imputed)	N
880	chr14	38793720	38793721	rs35009729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q21.1		rs35009729-C	NR	7E-19		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
881	chr14	38800703	38800704	rs4901812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	14q21.1		rs4901812-A	NR	1E-9		0.0408	[0.028-0.054] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
881	chr14	38804674	38804675	rs7147483	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q21.1	NR	rs7147483-C	0.3364	9E-18		0.0352	[0.027-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
881	chr14	38809660	38809661	rs61975988	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	14q21.1	CLEC14A	rs61975988-A	0.457	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
881	chr14	38818722	38818723	rs8018512	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q21.1	NR	rs8018512-G	0.7417	1E-12		0.0369	[0.027-0.047] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
881	chr14	38842758	38842759	rs112824462	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	14q21.1	CLEC14A	rs112824462-A	0.248	7E-9		0.0584	[0.038-0.078] unit decrease	Affymetrix, Illumina [30098705] (imputed)	N
881	chr14	38848002	38848003	rs1754680	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	14q21.1	CLEC14A, LINC00639	rs1754680-?	NR	8E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
881	chr14	38848418	38848419	rs8017808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	14q21.1		rs8017808-T	NR	2E-8		0.0469	[0.031-0.063] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
881	chr14	38848418	38848419	rs8017808	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	14q21.1	RP11-96D24.1	rs8017808-T	0.242765	7E-9		0.07948999	[0.053-0.106] unit decrease	Affymetrix [7288503] (imputed)	N
881	chr14	38848418	38848419	rs8017808	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q21.1	CLEC14A	rs8017808-G	0.7431	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
881	chr14	38912394	38912395	rs34310550	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q21.1	NR	rs34310550-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
882	chr14	39016229	39016230	rs17108156	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.1	intergenic	rs17108156-G	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
882	chr14	39020504	39020505	rs10498345	18075462	Suzuki S	2007-11-17	Pharmacogenet Genomics	A novel genetic marker for coronary spasm in women from a genome-wide single nucleotide polymorphism analysis.	Coronary spasm	50 Japanese ancestry female cases, 50 Japanese ancestry female controls	151 Japanese ancestry female cases, 160 Japanese ancestry female controls	14q21.1	intergenic	rs10498345-T	0.30	9E-7		2.33	[1.64-3.23]	Affymetrix [97552]	N
882	chr14	39021828	39021828	rs10656655	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q21.1	RP11-14N4.1	rs10656655-A	0.5287	2E-6		0.0354	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
882	chr14	39021828	39021828	rs10656655	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q21.1	RP11-14N4.1	rs10656655-A	0.5287	2E-6		0.0354	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
882	chr14	39025119	39025120	rs2415487	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q21.1	LOC283547	rs2415487-G	0.274	6E-6	(EA, women)	0.02	[0.011-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
884	chr14	39306808	39306809	rs8009993	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcaceae UCG009 id.11366)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	14q21.1		rs8009993-G	NR	4E-8		5.473122	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
885	chr14	39335814	39335815	rs8003775	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	14q21.1	LINC00639	rs8003775-?	NR	6E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
885	chr14	39368077	39368078	rs80093141	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	14q21.1	LINC00639	rs80093141-T	NR	8E-6		0.02664	[NR] unit increase	Illumina [1124301]	N
885	chr14	39437343	39437344	rs147032157	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q21.1	NR	rs147032157-A	0.1018	4E-6	(EA)	0.0483	[0.028-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
886	chr14	39477995	39477996	rs56869057	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q21.1	intergenic	rs56869057-?	NR	9E-6		0.139	[0.072-0.206] unit decrease	Illumina [at least 13000000] (imputed)	N
886	chr14	39480124	39480125	rs17108737	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.1	SIP1	rs17108737-?	NR	5E-7	(LPE 20:4)	0.24923655	[0.15-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
886	chr14	39531991	39531992	rs8022510	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels x season interaction	339,673 European ancestry individuals	NA	14q21.1		rs8022510-?	NR	3E-12		6.985	z score decrease	NR [6098063] (imputed)	N
886	chr14	39552483	39552484	rs2144530	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	14q21.1		rs2144530-C	0.18	4E-55		0.0676	[0.059-0.076] unit increase	NR [8806780] (imputed)	N
886	chr14	39552483	39552484	rs2144530	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	14q21.1		rs2144530-C	0.18	5E-53		0.0503	[0.044-0.057] unit increase	NR [6098063] (imputed)	N
886	chr14	39556184	39556185	rs8018720	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	14q21.1		rs8018720-?	NR	2E-38		0.0344962	[0.029-0.04] unit increase	NR [6912294] (imputed)	N
886	chr14	39556184	39556185	rs8018720	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	14q21.1		rs8018720-G	0.176673	2E-49		0.038	[0.032-0.044] unit increase	NR [7250403] (imputed)	N
886	chr14	39556184	39556185	rs8018720	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	14q21.1	NR	rs8018720-C	0.820235	4E-36		0.031949	[0.027-0.037] unit decrease	Affymetrix [16668957] (imputed)	N
886	chr14	39556184	39556185	rs8018720	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	14q21.1	SEC23A	rs8018720-C	NR	1E-11		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [up to 3600000] (imputed)	N
886	chr14	39583480	39583481	rs2277458	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	14q21.1	GEMIN2	rs2277458-G	0.786	6E-9		0.05	[0.03-0.07] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
887	chr14	39587437	39587438	rs6571897	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.1	SEC23A	rs6571897-?	NR	9E-6	(LPC 18:2)	0.21842806	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
887	chr14	39600211	39600212	rs8009933	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q21.1		rs8009933-A	0.6783	5E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
887	chr14	39600211	39600212	rs8009933	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q21.1	Intergenic	rs8009933-A	0.6783	1E-9	(MTAG)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
887	chr14	39647187	39647188	rs68193573	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 220)	19,670 European ancestry individuals	NA	14q21.1		rs68193573-?	NR	7E-10				NR [9705931] (imputed)	N
887	chr14	39681156	39681157	rs10138869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	14q21.1	NR	rs10138869-T	NR	1E-13		0.0281	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
887	chr14	39711528	39711528	rs71435622	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	14q21.1		rs71435622-A,rs71435622-A	0.711922	3E-8		0.0261991	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr14	39711528	39711528	rs71435622	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	14q21.1		rs71435622-A,rs71435622-A	0.711922	3E-8		0.0261991	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr14	39712100	39712101	rs61998509	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	14q21.1	NR	rs61998509-T	0.9648	8E-7		2.6366	[1.59-3.68] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
888	chr14	39742101	39742102	rs12881376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q21.1	CTAGE5, RP11-407N17.3	rs12881376-C	0.46612	8E-9		0.0130748125	[0.0086-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
888	chr14	39754592	39754593	rs187553507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q21.1		rs187553507-T	NR	4E-8		0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
888	chr14	39766073	39766074	rs62000665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q21.1		rs62000665-?	NR	1E-8				NR [~ 8900000] (imputed)	N
888	chr14	39794731	39794732	rs12897841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q21.1	NR	rs12897841-T	0.52735	1E-10		0.011901	[0.0083-0.0155] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
889	chr14	39858441	39858442	rs34983854	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	14q21.1	FBXO33	rs34983854-A	0.6028	2E-11		0.2056	[0.15-0.27] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
889	chr14	39888438	39888439	rs10136852	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.1	CTAGE5	rs10136852-?	NR	4E-6	(LPE 20:4)	0.19015753	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
889	chr14	39927604	39927605	rs6571939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q21.1		rs6571939-?	NR	9E-9				NR [~ 8900000] (imputed)	N
890	chr14	39983127	39983128	rs2038280	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	14q21.1		rs2038280-G	0.2	1E-7		2.15	[1.35-2.95] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
890	chr14	39998457	39998458	rs11624961	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	14q21.1	NR	rs11624961-G	NR	6E-6		0.01102	[0.0062-0.0158] unit decrease	Illumina [~ 540852]	N
890	chr14	40025245	40025246	rs6571943	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	14q21.1	NR	rs6571943-A	NR	1E-6			unit increase	Illumina [at least 1198956] (imputed)	N
890	chr14	40039315	40039316	rs1950326	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	14q21.1	NR	rs1950326-T	NR	2E-6			unit increase	Illumina [at least 1198956] (imputed)	N
890	chr14	40077472	40077473	rs546301734	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	14q21.1		rs546301734-G	0.01385	5E-6		2.865	[1.82-4.50899999999999]	Affymetrix [7975321] (imputed)	N
890	chr14	40085558	40085559	rs56001627	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	14q21.1	NR	rs56001627-G	0.0631068	5E-6		1.3018842	[0.77-1.83] unit increase	Illumina [at least 621854] (imputed)	N
890	chr14	40101744	40101745	rs1956152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q21.1		rs1956152-?	NR	4E-9				NR [~ 8900000] (imputed)	N
890	chr14	40104717	40104718	rs369461388	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q21.1	FBXO33	rs369461388-G	0.854953	4E-10		0.0126017	[0.0087-0.0165] unit decrease	Affymetrix [12370749]	N
890	chr14	40105993	40105994	rs9805893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q21.1	NR	rs9805893-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
890	chr14	40105993	40105994	rs9805893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q21.1	NA	rs9805893-A	0.7978	9E-10		0.0155	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
891	chr14	40115096	40115097	rs17109505	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	14q21.1	NR	rs17109505-G	NR	3E-6		0.04122	[0.024-0.059] unit decrease	Illumina [~ 540852]	N
891	chr14	40153202	40153203	rs1546993	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	14q21.1	FBXO33, LOC644919	rs1546993-G	NR	2E-6		4.758	NR z score increase	Illumina [7839440] (imputed)	N
892	chr14	40305573	40305574	rs181881613	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.1	Intergenic	rs181881613-T	0.999	4E-6	(AA)	0.363	unit increase	Illumina [NR] (imputed)	N
892	chr14	40305573	40305574	rs181881613	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.1	Intergenic	rs181881613-T	0.999	4E-6	(AA)	1.826	NR unit increase	Illumina [NR] (imputed)	N
892	chr14	40369085	40369086	rs148431766	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	14q21.1	Intergenic	rs148431766-C	NR	2E-7	(AA)	2.0833335		Illumina [at least 360704] (imputed)	N
893	chr14	40391172	40391173	rs192336334	29097388	Magvanjav O	2017-11-02	J Am Heart Assoc	Genetic Variants Associated With Uncontrolled Blood Pressure on Thiazide Diuretic/?-Blocker Combination Therapy in the PEAR (Pharmacogenomic Evaluation of Antihypertensive Responses) and INVEST (International Verapamil-SR Trandolapril Study) Trials.	Diastolic blood pressure in combination therapy (beta blocker and thiazide diuretic)	314 European ancestry individuals	221 European ancestry individuals, 193 Hispanic individuals	14q21.1	RP11-111A21.1	rs192336334-T	0.05	9E-6		5.35	unit increase	Illumina [NR] (imputed)	N
893	chr14	40397796	40397797	rs187962714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q21.1	RP11-111A21.1	rs187962714-A	0.9919	5E-6		0.8056	[0.46-1.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
893	chr14	40397796	40397797	rs187962714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	14q21.1	RP11-111A21.1	rs187962714-A	0.9919	5E-6		0.8056	[0.46-1.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr14	40663383	40663384	rs78035260	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.1	NR	rs78035260-G	0.0122	3E-10	(SELENBP1)	1.866	NR unit increase	Illumina [1671387] (imputed)	N
895	chr14	40676917	40676918	rs4454866	26915486	Adams JN	2016-02-23	Gene	Genetic analysis of advanced glycation end products in the DHS MIND study.	Advanced glycation end-product levels	399 diabetes cases, 107 non-diabetes controls from 240 families	NA	14q21.1	FBXO33	rs4454866-?	NR	5E-6		0.281	[0.16-0.4] unit increase	Affymetrix [371951]	N
895	chr14	40737058	40737059	rs147544940	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus B abundance in stool	5,959 Finnish ancestry individuals	NA	14q21.1		rs147544940-C	0.0130055	2E-8		0.141839	[0.092-0.191] unit increase	Illumina [7980478] (imputed)	N
895	chr14	40737058	40737059	rs147544940	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcaceae abundance in stool	5,959 Finnish ancestry individuals	NA	14q21.1		rs147544940-C	0.0130055	4E-9		0.119813	[0.08-0.16] unit increase	Illumina [7980478] (imputed)	N
895	chr14	40762263	40762264	rs68069729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q21.1	NR	rs68069729-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
896	chr14	40801750	40801751	rs1955540	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q21.1	NA	rs1955540-T	0.1937	2E-11		0.0145	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
896	chr14	40834176	40834177	rs872281	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q21.1	NA	rs872281-T	0.1755	2E-11		0.0152	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
896	chr14	40845124	40845125	rs67272968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q21.1		rs67272968-?	NR	8E-11				NR [~ 8900000] (imputed)	N
897	chr14	40910679	40910680	rs11157138	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q21.1	FBXO33	rs11157138-A	0.2881	1E-8		0.014956266	[0.0098-0.0201] unit increase	Affymetrix [11515109] (imputed)	N
897	chr14	40925880	40925881	rs10150590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q21.1		rs10150590-?	NR	1E-8				NR [~ 8900000] (imputed)	N
897	chr14	41010555	41010556	rs11157143	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	14q21.1		rs11157143-A	0.7264	8E-10		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
898	chr14	41052540	41052541	rs11847782	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q21.1	NR	rs11847782-A	NR	9E-9		5.74	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
898	chr14	41059927	41059928	rs12147463	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q21.1	intergenic	rs12147463-G	0.807274	4E-14		0.0201657	[0.015-0.025] unit increase	NR [16516521] (imputed)	N
898	chr14	41081972	41081973	rs12886584	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q21.1	NR	rs12886584-T	NR	9E-9		5.741	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
898	chr14	41134167	41134168	rs35760956	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q21.1	NR	rs35760956-A	0.375746	3E-10		0.04097344	[0.028-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
898	chr14	41134167	41134168	rs35760956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q21.1	Intergenic	rs35760956-A	0.5969	2E-9	(MTAG)	0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
898	chr14	41134167	41134168	rs35760956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q21.1	Intergenic	rs35760956-A	0.5969	2E-10		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
898	chr14	41134167	41134168	rs35760956	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q21.1	NR	rs35760956-A	NR	2E-12		7.012	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
898	chr14	41134167	41134168	rs35760956	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q21.1	NR	rs35760956-?	NR	9E-8		5.343	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
899	chr14	41276425	41276426	rs1176869	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	14q21.1	intergenic	rs1176869-?	NR	9E-7		1.350929	[1.198098-1.523256]	Illumina [at least 4756772] (imputed)	N
900	chr14	41336101	41336102	rs61985411	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q21.1	LRFN5	rs61985411-T	0.928673	2E-9		0.0165324	[0.011-0.022] unit decrease	Affymetrix [12370749]	N
900	chr14	41391251	41391252	rs17111230	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	14q21.1	intergenic	rs17111230-?	NR	1E-6		1.300763	[1.170317-1.445749]	Illumina [at least 4756772] (imputed)	N
900	chr14	41403159	41403160	rs1349573	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	14q21.1	LOC644919	rs1349573-G	0.06	2E-6	(female)	0.45	[0.25-0.65] unit increase	Illumina [7411206] (imputed)	N
901	chr14	41491695	41491696	rs146026629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	14q21.1		rs146026629-T	NR	2E-8		0.1414	[0.092-0.191] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
901	chr14	41491695	41491696	rs146026629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	14q21.1		rs146026629-T	0.005658	2E-8		0.141374	[0.092-0.191] unit increase	Illumina [13477028] (imputed)	N
901	chr14	41523461	41523462	rs1959947	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	14q21.1	LRFN5	rs1959947-A	0.27	7E-6	(PS levels)	4.76	[2.68-6.84] iu/ml increase	Illumina [472123]	N
902	chr14	41653330	41653331	rs56353074	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	14q21.1	NR	rs56353074-A	0.6905	8E-7		0.5531	[0.33-0.77] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
902	chr14	41674902	41674903	rs1782170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q21.1		rs1782170-?	NR	7E-9				NR [~ 8900000] (imputed)	N
903	chr14	41693939	41693940	rs1782179	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	14q21.1	NR	rs1782179-T	NR	2E-8		0.01471	[0.0096-0.0198] unit decrease	Affymetrix [10847151] (imputed)	N
903	chr14	41694017	41694018	rs1778377	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q21.1	NR	rs1778377-A	NR	2E-8		5.576	z score decrease	Affymetrix [10847151] (imputed)	N
903	chr14	41694017	41694018	rs1778377	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q21.1	NR	rs1778377-A	0.271168	2E-9		6.04	z score decrease	NR [10847151] (imputed)	N
903	chr14	41702597	41702598	rs1612141	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	14q21.1	LRFN5	rs1612141-A	0.21	5E-6	(Sulfonylurea Hypoglycemic agents)			Affymetrix, Illumina [~ 2500000] (imputed)	N
903	chr14	41794461	41794462	rs140092241	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q21.1	NR	rs140092241-T	0.286338	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
903	chr14	41803290	41803291	rs1006417	27957625	Bacchelli E	2016-12-13	J Headache Pain	A genome-wide analysis in cluster headache points to neprilysin and PACAP receptor gene variants.	Cluster headache	99 Italian ancestry cases, 359 Italian ancestry smoker controls		14q21.1	intergenic	rs1006417-A	0.74	1E-6		2.94	[1.82-4.76]	Illumina [290505]	N
904	chr14	41820080	41820081	rs185812109	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	14q21.1		rs185812109-T	0.988266	1E-5		0.0560984	[0.031-0.081] unit decrease	Illumina [13900000] (imputed)	N
904	chr14	41824443	41824444	rs7154329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q21.1	NR	rs7154329-G	0.499543509176449	1E-8		0.005207144	[0.0034-0.007] unit decrease	NR [NR]	N
904	chr14	41824443	41824444	rs7154329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q21.1	NR	rs7154329-G	0.499543509176449	3E-8		0.0063259783	[0.0041-0.0086] unit decrease	NR [NR]	N
904	chr14	41824443	41824444	rs7154329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q21.1	NR	rs7154329-G	0.499543509176449	2E-8		0.008201325	[0.0053-0.0111] unit decrease	NR [NR]	N
904	chr14	41824443	41824444	rs7154329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	14q21.1	NR	rs7154329-G	0.499543509176449	5E-8		0.0067091063	[0.0043-0.0091] unit decrease	NR [NR]	N
904	chr14	41824443	41824444	rs7154329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q21.1	NR	rs7154329-G	0.499543509176449	2E-8		0.0052586584	[0.0034-0.0071] unit decrease	NR [NR]	N
904	chr14	41837615	41837617	rs35071394	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	14q21.1	FBXO33, LRFN5	rs35071394-C	0.92	7E-7	(EA)	2.93	[1.92-4.48]	Affymetrix [up to 9627525] (imputed)	N
904	chr14	41898816	41898817	rs28776624	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in epilepsy	471 European ancestry cases, 929 European ancestry controls	NA			rs28776624-?	NR	4E-6				Illumina [NR] (imputed)	N
905	chr14	41945441	41945442	rs61991628	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q21.1	NR	rs61991628-A	0.874	2E-8		0.0608	[0.04-0.082] unit increase	Illumina [~ 10600000] (imputed)	N
905	chr14	41965939	41965940	rs10131690	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q21.1	NR	rs10131690-?		8E-6				Illumina [4322238] (imputed)	N
905	chr14	41980597	41980598	rs9806026	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	14q21.1		rs9806026-?	NR	5E-8				NR [NR]	N
905	chr14	41980597	41980598	rs9806026	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	14q21.1		rs9806026-?	NR	1E-8		0.9498	[0.93-0.97]	NR [NR]	N
905	chr14	42053630	42053631	rs76417744	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.1	NR	rs76417744-A	0.0122	1E-8	(CES2)	0.3482	NR unit increase	Illumina [1671387] (imputed)	N
905	chr14	42053900	42053901	rs1950832	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	14q21.1	LRFN5	rs1950832-C	0.78	9E-6	(men)	0.121	[0.068-0.174] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
905	chr14	42069888	42069889	rs61990287	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q21.1	LRFN5	rs61990287-A	0.2742	6E-9		1.0251101		Affymetrix [11880941] (imputed)	N
906	chr14	42074725	42074726	rs61990288	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	14q21.1	NR	rs61990288-G	NR	2E-10		1.0309278		NR [NR] (imputed)	N
906	chr14	42074725	42074726	rs61990288	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	14q21.1	NR	rs61990288-G	0.4917	2E-31		1.025641	[1.02-1.03]	NR [8098588] (imputed)	N
906	chr14	42075951	42075952	rs1111179	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q21.1	NR	rs1111179-T	0.511500935950343	3E-8		0.008134178	[0.0052-0.011] unit decrease	NR [NR]	N
906	chr14	42075951	42075952	rs1111179	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q21.1	NR	rs1111179-T	0.511500935950343	3E-8		0.005224298	[0.0034-0.0071] unit decrease	NR [NR]	N
906	chr14	42076639	42076640	rs1950835	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q21.1	NR	rs1950835-T	0.512651696563114	2E-8		0.0051443544	[0.0033-0.0069] unit decrease	NR [NR]	N
906	chr14	42076639	42076640	rs1950835	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q21.1	NR	rs1950835-T	0.512651696563114	4E-8		0.006271684	[0.004-0.0085] unit decrease	NR [NR]	N
906	chr14	42077287	42077288	rs1137567	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	14q21.1		rs1137567-?	NR	4E-6		1.753	[1.381-2.226]	Affymetrix [7975321] (imputed)	N
906	chr14	42097936	42097937	rs1950829	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder or stress-related disorder	16,823 European ancestry cases, 25,632 European ancestry controls, 12,665 European ancestry cases, 19,225 European ancestry controls	NA	14q21.1		rs1950829-?	NR	3E-8				NR [NR]	N
906	chr14	42097936	42097937	rs1950829	34634379	Mei L	2021-10-08	Prog Neuropsychopharmacol Biol Psychiatry	Overlapping common genetic architecture between major depressive disorders and anxiety and stress-related disorders.	Major depressive disorder	16,823 European ancestry cases, 25,632 European ancestry controls	NA	14q21.1		rs1950829-?	NR	8E-9		1.04645	[1.03-1.06]	NR [NR]	N
906	chr14	42097936	42097937	rs1950829	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	14q21.1		rs1950829-?	NR	3E-16		0.0239	unit increase	NR [NR]	N
906	chr14	42097936	42097937	rs1950829	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q21.1	NR	rs1950829-A	0.4827	1E-11		0.027922139	[0.02-0.036] unit increase	NR [NR]	N
906	chr14	42097936	42097937	rs1950829	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q21.1	LRFN5	rs1950829-?		2E-8				NR [6786993] (imputed)	N
906	chr14	42141200	42141201	rs1900599	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	14q21.1	NR	rs1900599-A	0.2782	6E-7		0.0065	[0.004-0.009] unit increase	NR [7666894] (imputed)	N
906	chr14	42179731	42179732	rs4904738	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	14q21.1	LRFN5	rs4904738-C	0.43	3E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
907	chr14	42224393	42224394	rs138523818	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q21.1	Intergenic	rs138523818-?		2E-6		1.14	[1.08-1.20]	Illumina [7645193] (imputed)	N
907	chr14	42224393	42224394	rs138523818	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q21.1	Intergenic	rs138523818-?		3E-7		3.57	[2.19-5.83]	Illumina [7645193] (imputed)	N
907	chr14	42273569	42273570	rs34217772	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q21.1	LRFN5	rs34217772-?		1E-39				Affymetrix, Illumina [NR] (imputed)	N
907	chr14	42273569	42273570	rs34217772	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	14q21.1	LRFN5	rs34217772-?	NR	2E-16		1.081	[1.061-1.102]	Illumina [13762925] (imputed)	N
907	chr14	42277660	42277661	rs2180231	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q21.1	NR	rs2180231-A		2E-13		0.1	[0.08-0.12] unit increase	NR [NR]	N
907	chr14	42294992	42294993	rs36024104	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q21.1	LRFN5	rs36024104-A	0.8227	1E-19		9.09	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
907	chr14	42294992	42294993	rs36024104	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q21.1	NR	rs36024104-A	0.8258	8E-17		0.0761	[0.058-0.094] unit increase	Illumina [~ 10600000] (imputed)	N
908	chr14	42341056	42341057	rs2147112	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q21.1	NR	rs2147112-?	NR	1E-10				Illumina [7760689] (imputed)	N
908	chr14	42424473	42424474	rs1957868	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.1	FBXO33	rs1957868-?	NR	9E-6	(CE 18:0)	0.1562668	[0.087-0.225] unit increase	Affymetrix [at least 2500000] (imputed)	N
910	chr14	42655274	42655275	rs2154294	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (12-month weekly alcohol consumption)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	14q21.1	intergenic	rs2154294-G	0.44	3E-6		0.08	[NR] unit increase	Illumina [~ 300000]	N
910	chr14	42700538	42700539	rs117662630	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q21.1	intergenic	rs117662630-T	0.0148489770151395	1E-7	(G_Anaerostipes_RNT)	0.51683	[0.33-0.71] unit decrease	Illumina [7711310] (imputed)	N
910	chr14	42721156	42721157	rs1393840	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	14q21.1	LRFN5	rs1393840-T	0.4069	8E-10		0.01213559	[0.0083-0.016] unit decrease	Illumina [9339358] (imputed)	N
911	chr14	42773174	42773175	rs2415725	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q21.1	LRFN5	rs2415725-T	0.675	2E-11		0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
911	chr14	42805904	42805905	rs1483898	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	14q21.1	LRFN5	rs1483898-A	0.236	8E-8		0.148	[0.094-0.2] unit increase	Affymetrix [7519176] (imputed)	N
911	chr14	42823073	42823074	rs1484081	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	14q21.1	NR	rs1484081-G	NR	4E-6	(EA)	0.00205	NR unit increase	Illumina [3262988] (imputed)	N
912	chr14	42879734	42879735	rs2626454	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	14q21.1	LRFN5	rs2626454-?	NR	5E-8				NR [3144808] (imputed)	N
912	chr14	42885335	42885336	rs12889085	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q21.1	NA	rs12889085-A	0.5777	8E-12		0.0132	[0.0095-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
912	chr14	42924811	42924812	rs74513917	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	14q21.1	NR	rs74513917-T	0.01123	3E-7		0.7445	[0.46-1.03] unit increase	Illumina [10677593] (imputed)	N
912	chr14	42939470	42939471	rs8011566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q21.1		rs8011566-A	NR	4E-10		0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
912	chr14	42939470	42939471	rs8011566	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q21.1	LRFN5	rs8011566-T	0.574127	4E-10		0.00873021	[0.006-0.0115] unit decrease	Affymetrix [12370749]	N
912	chr14	42939470	42939471	rs8011566	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q21.1	NR	rs8011566-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
912	chr14	42939470	42939471	rs8011566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q21.1		rs8011566-?	NR	2E-11				NR [~ 8900000] (imputed)	N
914	chr14	43178406	43178407	rs1777084	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	14q21.1	intergenic	rs1777084-?	NR	1E-6	(Hispanic/Latino)	3.3	[1.93-4.67] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
915	chr14	43282413	43282414	rs8009169	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (lumbar spine) in inflammatory bowel disease	254 Japanese ancestry cases	NA	14q21.1	Intergenic	rs8009169-C	NR	1E-6		0.5	[NR] unit decrease	Affymetrix [4384682] (imputed)	N
915	chr14	43315593	43315594	rs10130902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.1	C14orf155	rs10130902-?	NR	9E-7	(pyruvate)	0.4399645	[0.26-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
915	chr14	43317611	43317612	rs6572180	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q21.1	NR	rs6572180-?	NR	8E-8				Affymetrix [NR]	N
915	chr14	43382361	43382362	rs1624005	28500057	Bluett J	2017-05-12	Ann Rheum Dis	HLA-A 31:01 is not associated with the development of methotrexate pneumonitis in the UK population: results from a genome-wide association study.	Methotrexate-induced interstitial lung disease in rheumatoid arthritis	62 European ancestry cases, 175 European ancestry controls	NA	14q21.1	NR	rs1624005-?		7E-6		2.59	[NR]	Illumina [NR]	N
916	chr14	43403458	43403459	rs11157317	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		14q21.1	NR	rs11157317-A	0.25	9E-6	(HD vs. controls)	1.29	[1.15-1.44]	Illumina [414804]	N
916	chr14	43493824	43493825	rs76686504	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.2	NR	rs76686504-G	0.0122	3E-8	(MAP4)	0.0218	NR unit increase	Illumina [1671387] (imputed)	N
916	chr14	43493824	43493825	rs76686504	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.2	NR	rs76686504-G	0.0122	3E-8	(AHNAK)	0.1264	NR unit increase	Illumina [1671387] (imputed)	N
916	chr14	43493824	43493825	rs76686504	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.2	NR	rs76686504-G	0.0122	1E-8	(TMSB4X)	0.2463	NR unit increase	Illumina [1671387] (imputed)	N
917	chr14	43529764	43529765	rs117097805	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	14q21.2		rs117097805-A	NR	7E-8	(daytime napping)	1.783	[1.13-2.43] unit decrease	Affymetrix [7141204] (imputed)	N
917	chr14	43531401	43531402	rs2488856	25080503	Kwan JS	2014-07-30	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies two loci associated with circulating osteoprotegerin levels.	Osteoprotegerin levels	4,158 European ancestry males, 531 South Tyrol males, 4,253 European ancestry females, 692 South Tyrol females, 702 Han Chinese ancestry females	NA	14q21.2	intergenic	rs2488856-A	0.898	5E-8	(Sex-combined)	0.044	[0.028-0.060] unit decrease	Affymetrix, Illumina [up to 2544063] (imputed)	N
917	chr14	43536181	43536182	rs188176346	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q21.2		rs188176346-T	NR	5E-7		1.8063	[1.12-2.49] unit decrease	Illumina [NR] (imputed)	N
918	chr14	43700189	43700189	rs200481868	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q21.2		rs200481868-TA	NR	5E-6		1.8368	[1.06-2.61] unit increase	Illumina [NR] (imputed)	N
918	chr14	43728515	43728516	rs139814511	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q21.2	RP11-88E18.1	rs139814511-T	0.9954	6E-6		0.3123	[0.18-0.45] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
919	chr14	43827003	43827004	rs2029727	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q21.2	NR	rs2029727-?	NR	2E-6				Affymetrix [NR]	N
919	chr14	43851875	43851876	rs185668096	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q21.2		rs185668096-A	NR	8E-7		2.5521	[1.57-3.54] unit increase	Illumina [NR] (imputed)	N
920	chr14	43962030	43962031	rs150026115	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q21.2		rs150026115-T	NR	5E-6		1.9088	[1.11-2.71] unit increase	Illumina [NR] (imputed)	N
920	chr14	43974996	43974997	rs62002181	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q21.2	intergenic	rs62002181-C	0.14	2E-6		1.07972	[1.05-1.11]	NR [9372253] (imputed)	N
921	chr14	44055538	44055539	rs8019581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q21.2		rs8019581-?	NR	8E-8				NR [~ 8900000] (imputed)	N
921	chr14	44115124	44115125	rs7147984	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	14q21.2	NR	rs7147984-?	NR	1E-6		0.0908817	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
921	chr14	44170625	44170626	rs8021600	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	14q21.2	NR	rs8021600-G	0.08	3E-6		1.9607843	[1.69-2.24]	NR [up to 6398204] (imputed)	N
924	chr14	44434336	44434337	rs1957497	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	14q21.2	NR	rs1957497-?	NR	5E-6		0.0205	[0.012-0.029] unit decrease	Illumina [at least 560000] (imputed)	N
925	chr14	44650410	44650411	rs2415841	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Diastolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	14q21.2	LINC02307	rs2415841-C	0.04655	2E-6		1.8244	[1.07-2.58] unit increase	Affymetrix [NR] (imputed)	N
925	chr14	44682863	44682864	rs12590995	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	14q21.2	intergenic	rs12590995-C	0.9192	5E-6	(Ordinal II)	0.4532	[0.26-0.65] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
925	chr14	44682863	44682864	rs12590995	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	14q21.2	intergenic	rs12590995-C	0.9191	3E-6	(Ordinal I)	0.4494	[0.26-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
928	chr14	45020938	45020939	rs9805933	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	14q21.2	FSCB	rs9805933-C	0.21	1E-6		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
928	chr14	45046628	45046629	rs113317269	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q21.2	NR	rs113317269-?	NR	6E-7				Affymetrix [5486770] (imputed)	N
929	chr14	45106631	45106632	rs12884395	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q21.2	FSCB	rs12884395-G	0.178	9E-6	(IGFBP-1 )	0.02	[NR] ng/mL increase	Illumina [899892]	N
929	chr14	45203475	45203476	rs712419	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in lung cancer	112 cases	NA	14q21.2	C14orf28	rs712419-?		2E-6		0.076	[0.047-0.105] unit increase	Affymetrix [418365]	N
929	chr14	45205942	45205943	rs17703846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pyelonephritis	1,811 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	14q21.2		rs17703846-T	0.016129254	2E-8		0.83403707	[0.54-1.13] unit increase	Illumina [13429797] (imputed)	N
929	chr14	45214873	45214874	rs140283841	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q21.2	intergenic	rs140283841-T	0.0118379791012871	5E-6	(G_Acidaminococcus_HB)	1.20333	[0.69-1.72] unit increase	Illumina [7711310] (imputed)	N
930	chr14	45285208	45285209	rs190152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q21.2	Intergenic	rs190152-T	0.6465	5E-8	(MTAG)	0.0075	[0.0048-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
930	chr14	45323580	45323581	rs144667340	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs144667340-T	NR	3E-10	(AA)			Illumina [up to 11995908] (imputed)	N
930	chr14	45323580	45323581	rs144667340	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs144667340-T	NR	3E-10				Illumina [up to 11995908] (imputed)	N
930	chr14	45333375	45333376	rs141232514	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs141232514-T	NR	3E-10	(AA)			Illumina [up to 11995908] (imputed)	N
930	chr14	45333375	45333376	rs141232514	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs141232514-T	NR	3E-10				Illumina [up to 11995908] (imputed)	N
931	chr14	45450478	45450479	rs78592865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q21.2		rs78592865-?	NR	1E-9				NR [~ 8900000] (imputed)	N
932	chr14	45547336	45547337	rs115837469	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs115837469-A	NR	4E-10	(AA)			Illumina [up to 11995908] (imputed)	N
932	chr14	45547336	45547337	rs115837469	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs115837469-A	NR	4E-10				Illumina [up to 11995908] (imputed)	N
932	chr14	45598753	45598754	rs3783702	34067580	Kim HR	2021-05-17	Genes (Basel)	A Genome-Wide Association Study for Hypertensive Kidney Disease in Korean Men.	Hypertensive renal disease	310 Korean ancestry male cases, 2,294 Korean ancestry male controls	43 Korean ancestry male cases, 636 Korean ancestry male controls	14q21.2	FKBP3	rs3783702-A	0.125	7E-7		1.77	[1.41 - 2.21]	Affymetrix [NR] (imputed)	N
933	chr14	45651459	45651459	rs148174010	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	FANCM	rs148174010-AT	NR	2E-7	(AA)			Illumina [up to 11995908] (imputed)	N
933	chr14	45651459	45651459	rs148174010	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	FANCM	rs148174010-AT	NR	2E-7				Illumina [up to 11995908] (imputed)	N
933	chr14	45665467	45665468	rs3736772	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	14q21.2		rs3736772-C	0.92	3E-11		0.13	unit decrease	Illumina [2093892] (imputed)	N
933	chr14	45665467	45665468	rs3736772	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	14q21.2		rs3736772-C	0.92	2E-9		0.14	unit decrease	Illumina [2398641] (imputed)	N
933	chr14	45732323	45732324	rs12890924	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	14q21.2	NR	rs12890924-G	0.439364	3E-8		0.0391225	[0.025-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
935	chr14	45880295	45880296	rs117293193	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q21.2	NR	rs117293193-?	NR	2E-9				Illumina [7760689] (imputed)	N
935	chr14	46006239	46006240	rs12100649	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	14q21.2	RPL10L, FANCM	rs12100649-?	0.0	3E-10				Affymetrix [547296]	N
936	chr14	46029686	46029687	rs7140958	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	14q21.2	intergenic	rs7140958-?	0.02	2E-7		0.085	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
937	chr14	46212439	46212440	rs10134261	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.2	FANCM	rs10134261-?	NR	8E-6	(adenosine monophosphate)	0.6146613	[0.34-0.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
937	chr14	46221654	46221655	rs555376144	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement	3,864 European ancestry cases, 208,258 European ancestry controls	NA	14q21.2	MIS18BP1, LINC00873	rs555376144-T	0.0024	1E-9		2.91	[2.06-4.12]	Affymetrix [17556449] (imputed)	N
937	chr14	46222845	46222846	rs143370239	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q21.2	NR	rs143370239-?		6E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
937	chr14	46239365	46239366	rs12879808	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q21.2	NR	rs12879808-?		4E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
938	chr14	46341416	46341417	rs61668520	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q21.2	intergenic	rs61668520-T	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
938	chr14	46370529	46370530	rs10149694	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	14q21.2	NR	rs10149694-C	0.3392	4E-6		0.1456	[0.084-0.207] unit increase	Illumina [10677593] (imputed)	N
939	chr14	46406915	46406916	rs1957173	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	14q21.2	MIS18BP1, LINC00871	rs1957173-?		7E-7		1.6393442	[1.35-2]	Illumina [1444884]	N
939	chr14	46412712	46412713	rs191739273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs191739273-G	1.0	3E-9	(AA)	0.495	unit increase	Illumina [NR] (imputed)	N
939	chr14	46412712	46412713	rs191739273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs191739273-G	1.0	2E-7	(AA)	2.177	NR unit increase	Illumina [NR] (imputed)	N
939	chr14	46476983	46476984	rs186152940	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs186152940-A	0.999	3E-6	(AA)	1.62	NR unit increase	Illumina [NR] (imputed)	N
940	chr14	46564654	46564655	rs191755093	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs191755093-T	1.0	3E-9	(AA)	0.5	unit increase	Illumina [NR] (imputed)	N
940	chr14	46564654	46564655	rs191755093	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs191755093-T	1.0	2E-7	(AA)	2.206	NR unit increase	Illumina [NR] (imputed)	N
940	chr14	46571152	46571153	rs34200710	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q21.2	NR	rs34200710-C	0.144	3E-8		0.0088112	[0.0057-0.0119] unit decrease	NR [9732723] (imputed)	N
940	chr14	46592752	46592753	rs7151257	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels in polycystic ovary syndrome	1,882 Han Chinese ancestry individuals	NA	14q21.2	NR	rs7151257-A	0.3538	8E-6		0.2607	NR unit decrease	Affymetrix [3101376] (imputed)	N
941	chr14	46762469	46762470	rs111295476	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q21.2	LINC00871	rs111295476-?		9E-6				Illumina [4322238] (imputed)	N
942	chr14	46803674	46803675	rs2415955	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	14q21.2	NR	rs2415955-T	NR	7E-6		0.081	[0.046-0.116] unit decrease	Illumina [6319684] (imputed)	N
942	chr14	46873775	46873776	rs2415984	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Number of children ever born	225,230 European ancestry women, 103,909 European ancestry men		14q21.2	LINC00871	rs2415984-A	0.47	2E-8		0.02	NR unit decrease	NR [2400000] (imputed)	N
942	chr14	46873775	46873776	rs2415984	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Number of children ever born	103,909 European ancestry men		14q21.2	AFF3, LINC01104	rs2415984-A	0.47	2E-6		0.029	NR unit decrease	NR [2400000] (imputed)	N
943	chr14	46926169	46926170	rs188623516	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative delirium after cardiac surgery	148 cases, 819 controls	NA	14q21.2	LINC00871	rs188623516-?	NR	4E-6	(adjusted for atrial fibrillation, myocardial infarction, renal failure and stroke)	50.0	[10-?]	Illumina [9007469] (imputed)	N
943	chr14	46956862	46956863	rs8010773	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q21.2	RPL10L	rs8010773-T	NR	1E-9		0.00778547	[0.0053-0.0103] unit increase	Affymetrix [10061374] (imputed)	N
943	chr14	46976022	46976023	rs12323609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q21.2	NR	rs12323609-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
943	chr14	46984873	46984874	rs12884871	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	14q21.2	RPL10L	rs12884871-C	0.03	1E-7		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
943	chr14	47002223	47002224	rs138828454	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	14q21.2	NR	rs138828454-A	0.99	5E-6		1.11	[-0.9872-3.2072]	Affymetrix [at least 143006] (imputed)	N
944	chr14	47082470	47082471	rs192522312	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs192522312-C	1.0	3E-9	(AA)	0.579	unit increase	Illumina [NR] (imputed)	N
944	chr14	47082470	47082471	rs192522312	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.2	Intergenic	rs192522312-C	1.0	2E-7	(AA)	2.547	NR unit increase	Illumina [NR] (imputed)	N
944	chr14	47094645	47094646	rs360178	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	14q21.2	RPL10L	rs360178-T		9E-6		0.03053	[NR] unit increase	Illumina [635970]	N
945	chr14	47199332	47199333	rs185449237	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	Intergenic	rs185449237-A	1.0	4E-9	(AA)	0.632	unit increase	Illumina [NR] (imputed)	N
945	chr14	47199332	47199333	rs185449237	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	Intergenic	rs185449237-A	1.0	3E-7	(AA)	2.782	NR unit increase	Illumina [NR] (imputed)	N
945	chr14	47200861	47200862	rs192383543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	Intergenic	rs192383543-C	1.0	4E-9	(AA)	0.633	unit increase	Illumina [NR] (imputed)	N
945	chr14	47200861	47200862	rs192383543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	Intergenic	rs192383543-C	1.0	3E-7	(AA)	2.784	NR unit increase	Illumina [NR] (imputed)	N
945	chr14	47229011	47229012	rs75477320	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	14q21.3	RPL10L	rs75477320-T	0.13	9E-6		0.16	[0.082-0.238] unit increase	Illumina [14638245] (imputed)	N
945	chr14	47235444	47235445	rs11848063	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	14q21.3	RPL10L, MDGA2	rs11848063-A	0.591682226	3E-6		1.0807451	[1.05-1.12]	Illumina [10439017] (imputed)	N
945	chr14	47242424	47242425	rs8012767	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q21.3	NR	rs8012767-C	0.524259	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
945	chr14	47296285	47296286	rs1491905	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q21.3	NA	rs1491905-T	0.4725	4E-18		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
945	chr14	47298504	47298505	rs35697587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q21.3	NR	rs35697587-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
945	chr14	47298504	47298505	rs35697587	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q21.3	NR	rs35697587-G	0.49	2E-11		0.016689584	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
945	chr14	47303113	47303114	rs12885458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q21.3		rs12885458-?	NR	9E-19				NR [~ 8900000] (imputed)	N
945	chr14	47303576	47303577	rs724623	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q21.3	MDGA2	rs724623-A	0.492239	9E-14		0.0102441	[0.0076-0.0129] unit increase	Affymetrix [12370749]	N
945	chr14	47304090	47304091	rs723355	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q21.3	NR	rs723355-G	0.5624	2E-9		0.0237	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
945	chr14	47306417	47306418	rs4900715	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q21.3	NA	rs4900715-A	0.5275	5E-18		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
945	chr14	47309878	47309879	rs12879453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q21.3		rs12879453-G	NR	3E-13		0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
945	chr14	47313540	47313541	rs2933211	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q21.3	NR	rs2933211-G	0.499	6E-9		0.0268	[0.018-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
946	chr14	47318776	47318777	rs2933213	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q21.3		rs2933213-C	0.581	9E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
946	chr14	47351021	47351022	rs188669819	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	MDGA2	rs188669819-T	1.0	8E-8	(AA)	0.799	unit increase	Illumina [NR] (imputed)	N
946	chr14	47351021	47351022	rs188669819	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q21.3	MDGA2	rs188669819-T	1.0	3E-6	(AA)	3.495	NR unit increase	Illumina [NR] (imputed)	N
946	chr14	47358473	47358474	rs2933223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q21.3		rs2933223-C	NR	1E-14		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
946	chr14	47367433	47367434	rs3007104	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q21.3	MDGA2	rs3007104-G	0.576728	2E-12		0.0148129	[0.011-0.019] unit increase	NR [16516521] (imputed)	N
946	chr14	47382491	47382492	rs2933188	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	14q21.3	NR	rs2933188-G	NR	5E-6		0.2317	[0.13-0.33] SD units increase	NR [10700000] (imputed)	N
946	chr14	47403683	47403684	rs12883384	18762592	van den Oord EJ	2008-09-01	Arch Gen Psychiatry	Genomewide association analysis followed by a replication study implicates a novel candidate gene for neuroticism.	Neuroticism	1,227 European ancestry individuals	1,880 European ancestry individuals	14q21.3	MAMDC1	rs12883384-?	NR	7E-7				Affymetrix [420287]	N
947	chr14	47454985	47454986	rs11627056	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q21.3	MDGA2	rs11627056-A	0.281	3E-7	(IL6 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
947	chr14	47459908	47459909	rs8016110	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	14q21.3	MDGA2	rs8016110-A	NR	3E-6		3.5		Affymetrix [8800000] (imputed)	N
947	chr14	47466176	47466177	rs9323124	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	14q21.3	MDGA2	rs9323124-?	NR	1E-6		3.97	[2.91-5.42]	Illumina [862198]	N
947	chr14	47530840	47530841	rs7147260	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	14q21.3	NR	rs7147260-C	NR	8E-6		1.54	[1.27-1.86]	Illumina [13976150] (imputed)	N
948	chr14	47685858	47685859	rs17118176	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	14q21.3	MDGA2	rs17118176-A	0.9373	4E-6	(EA)			Illumina [NR] (imputed)	N
949	chr14	47782655	47782655	rs141181598	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	14q21.3	NR	rs141181598-?		5E-6		2.09	[1.52-2.87]	Illumina [539473] (imputed)	N
949	chr14	47837748	47837749	rs10459501	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q21.3	Intergenic	rs10459501-T	0.3742	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
950	chr14	47863834	47863835	rs7159841	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	14q21.3	MAMDC1	rs7159841-?	0.21	2E-7	(Viscosity)			Affymetrix [70897]	N
950	chr14	47874556	47874557	rs17118552	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	14q21.3	MDGA2	rs17118552-?	0.014	2E-7	(CTJC , EA, RF+)	17.19	[NR] unit increase	Illumina [534053]	N
950	chr14	47882653	47882654	rs10139432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q21.3	Intergenic	rs10139432-T	0.6038	4E-8	(MTAG)	0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
950	chr14	47883745	47883746	rs4900759	31606302	Schijven D	2019-10-09	Eur Neuropsychopharmacol	Multivariate genome-wide analysis of stress-related quantitative phenotypes.	Stress-related phenotypes (multivariate analysis)	583 European and other ancestry individuals	NA	14q21.3	NR	rs4900759-T	NR	2E-8	(mental health and PTSD symptom scores)			Illumina [5361288] (imputed)	N
950	chr14	47930471	47930472	rs78274439	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	14q21.3	MDGA2	rs78274439-A	0.85	4E-6		1.73		Illumina [4903804] (imputed)	N
951	chr14	47986364	47986364	rs533475206	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		14q21.3	intergenic	rs533475206-AT	0.0569712	3E-6		0.886212	[0.52-1.25] unit increase	Illumina [640625] (imputed)	N
951	chr14	48015981	48015982	rs1160351	22445761	Kurose K	2012-03-23	Psychiatry Res	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NA	14q21.3	MDGA2	rs1160351-T	0.381	3E-7		2.92	[1.79-4.76]	Affymetrix [186320]	N
951	chr14	48040374	48040375	rs7144383	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	14q21.3	MDGA2	rs7144383-G	0.11	4E-6		1.44	[1.23-1.69]	Affymetrix [10601812] (imputed)	N
951	chr14	48054158	48054159	rs4143912	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q21.3	NR	rs4143912-G	0.417046732532265	7E-6	(IGP45)	0.1425	[0.08-0.205] unit increase	Illumina [~ 2500000] (imputed)	N
951	chr14	48054158	48054159	rs4143912	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q21.3	NR	rs4143912-G	0.416787130454141	6E-6	(IGP5)	0.1434	[0.081-0.206] unit increase	Illumina [~ 2500000] (imputed)	N
952	chr14	48149513	48149514	rs76049381	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	14q21.3	MDGA2	rs76049381-C	NR	3E-7		1.23		Illumina [at least 360704] (imputed)	N
952	chr14	48206683	48206684	rs150061627	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		14q21.3	Intergenic	rs150061627-T	0.004	5E-6	(liability model)	0.68	[0.39-0.97] unit increase	NR [19725427] (imputed)	N
953	chr14	48264049	48264050	rs2416114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q21.3	Intergenic	rs2416114-T	0.2112	1E-9	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
953	chr14	48310240	48310241	rs1956334	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q21.3	Intergenic	rs1956334-A	0.5228	8E-12	(MTAG)	0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
953	chr14	48310240	48310241	rs1956334	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q21.3	Intergenic	rs1956334-T	0.4772	2E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
953	chr14	48339517	48339518	rs7141457	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q21.3	RP11-479H16.1	rs7141457-?	NR	4E-8	(African)	0.2462	[0.16-0.33] unit increase	Affymetrix, Illumina [NR] (imputed)	N
954	chr14	48377424	48377425	rs144251028	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	14q21.3	MDGA2	rs144251028-T	NR	8E-6		0.223	[0.13-0.32] unit increase	Illumina [NR] (imputed)	N
954	chr14	48430793	48430794	rs8012503	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	14q21.3	LINC00648	rs8012503-C	0.8755	4E-8		1.0306476	[NR]	Illumina [12493444] (imputed)	N
954	chr14	48433264	48433265	rs1521162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q21.3	Intergenic	rs1521162-C	0.3478	5E-8	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
954	chr14	48455420	48455421	rs784819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q21.3	Intergenic	rs784819-A	0.3099	2E-8	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
955	chr14	48557308	48557309	rs189015517	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	14q21.3	MDGA2, RPL18P1	rs189015517-A	0.01	5E-7		2.18	[1.34-3.02] unit decrease	Illumina [8257341] (imputed)	N
955	chr14	48564955	48564956	rs7151223	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q21.3	AL358335.4	rs7151223-?	NR	1E-6	(Digit Span Forward)			Illumina [up to 563855]	N
955	chr14	48571085	48571086	rs10151354	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q21.3		rs10151354-G	0.363	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
955	chr14	48573235	48573236	rs62011985	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.3	NR	rs62011985-C	0.02962	2E-8	(AKR1B1)	0.0193	NR unit increase	Illumina [1671387] (imputed)	N
955	chr14	48601435	48601436	rs7151968	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Behavioral disturbance or psychiatric symptoms and prion disease	Up to 170 cases, 5,200 controls	NA	14q21.3	LOC100506433	rs7151968-?	0.205	6E-6		2.12	[1.55-2.90]	Illumina [518938]	N
957	chr14	48774379	48774380	rs12590206	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.3	RPS29	rs12590206-?	NR	6E-6	(SM 22:1)	0.20973484	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
957	chr14	48823884	48823885	rs117167774	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	14q21.3	LOC100506433	rs117167774-T	NR	2E-7	(%LAA-950, All)	0.47	[0.019-0.921] unit increase	Illumina [7600000] (imputed)	N
957	chr14	48868480	48868481	rs7147386	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	14q21.3	Intergenic	rs7147386-A	0.06275	4E-7		0.325	unit increase	Illumina [519442]	N
957	chr14	48879299	48879300	rs139795364	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	14q21.3	NR	rs139795364-G	0.009	5E-8	(Unifrac metric)	5.312509	NR z-score increase	Illumina [5293637] (imputed)	N
957	chr14	48879361	48879362	rs2900031	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Visual memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	14q21.3	intergenic	rs2900031-T		1E-6		0.59	[NR] unit increase	Illumina [NR] (imputed)	N
958	chr14	48940258	48940259	rs140269559	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	14q21.3		rs140269559-A	0.02551	2E-6		2.382	[1.669-3.4]	Affymetrix [7975321] (imputed)	N
958	chr14	48963629	48963630	rs1385594	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q21.3	NR	rs1385594-?		4E-6				Illumina [4322238] (imputed)	N
958	chr14	49019991	49019992	rs139624990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	14q21.3		rs139624990-T	NR	4E-8		0.0686	[0.044-0.093] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
959	chr14	49027093	49027094	rs34232405	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q21.3	NR	rs34232405-A	0.01568	2E-10	(NME8)	0.06018	NR unit increase	Illumina [1671387] (imputed)	N
959	chr14	49101832	49101833	rs1890709	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	14q21.3	LINC00648	rs1890709-A	0.33	7E-8	(female)	0.2	[0.12-0.28] unit increase	Illumina [7411206] (imputed)	N
959	chr14	49124884	49124885	rs2585349	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q21.3	PPIL5	rs2585349-?	NR	8E-6	(tryptophan)	0.31579173	[0.18-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
960	chr14	49153811	49153814	rs199820947	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	14q21.3	NR	rs199820947-GGCT	NR	9E-6		0.3206	[0.18-0.47] SD units increase	NR [10700000] (imputed)	N
960	chr14	49187909	49187910	rs60061574	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		14q21.3	NR	rs60061574-C	NR	5E-6		1.22731	[1.12407-1.34002]	Affymetrix [5734850] (imputed)	N
960	chr14	49251334	49251335	rs17120593	31794020	Matana A	2019-12-03	J Clin Endocrinol Metab	Genome-wide analysis identifies two susceptibility loci for positive thyroid peroxidase and thyroglobulin antibodies.	Thyroid autoantibody positivity (anti-thyroglobulin (TgAb) and/or anti-thyroid peroxidase  (TPOAb) levels)	619 Croatian ancestry cases, 1,994 Croatian ancestry controls	NA	14q21.3	AL512360.1	rs17120593-A	0.03	8E-7		0.23	[0.13-0.33] unit increase	Illumina [7411206] (imputed)	N
961	chr14	49372800	49372801	rs2352904	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	14q21.3	intergenic	rs2352904-?	NR	2E-6	(F2)			Affymetrix [70897]	N
961	chr14	49373397	49373398	rs185236232	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	14q21.3	RPS29	rs185236232-G	NR	5E-7		0.812022	[0.49-1.13] unit increase	Illumina [at least 950000] (imputed)	N
962	chr14	49426841	49426842	rs7158872	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	14q21.3	RPS29	rs7158872-?	NR	3E-6	(Trauma exposed controls; AA)			Illumina [up to 871502]	N
962	chr14	49426841	49426842	rs7158872	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	14q21.3	RPS29	rs7158872-?	NR	2E-6	(Whole cohort; AA)			Illumina [up to 871502]	N
962	chr14	49437930	49437931	rs2352908	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	14q21.3	intergenic	rs2352908-G	0.84	1E-6		0.12	[0.071-0.169] unit increase	Illumina [~ 2500000] (imputed)	N
962	chr14	49463483	49463484	rs11845208	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	14q21.3	ATP5GP2	rs11845208-G		1E-7	(AA)			Illumina [NR]	N
962	chr14	49490301	49490302	rs2790569	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	14q21.3	RP11-816J8.1	rs2790569-T	NR	9E-6		1.024	[1.013- 1.035]	Illumina [6740241] (imputed)	N
962	chr14	49534424	49534425	rs8013477	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	14q21.3	RPS29	rs8013477-C	0.24	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
962	chr14	49537618	49537619	rs118177209	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	14q21.3	NR	rs118177209-A	0.04	5E-21		3.59	[NR]	Illumina [747089]	N
963	chr14	49595244	49595245	rs6572548	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	14q21.3	NR	rs6572548-T	0.2807	3E-7		0.016797926	[0.01-0.023] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
963	chr14	49623838	49623839	rs4357853	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	14q21.3	NR	rs4357853-C	0.2932	1E-8		0.0142	[0.0093-0.0191] unit increase	Illumina [NR] (imputed)	N
964	chr14	49778542	49778543	rs10138228	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	14q21.3	NR	rs10138228-?	NR	9E-6		4.44	[NR] z-score increase	Illumina [1387382] (imputed)	N
964	chr14	49787890	49787891	rs149625893	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	14q21.3	RP11-326E7.1	rs149625893-T	0.9973	6E-6		1.368	[0.78-1.96] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
964	chr14	49803163	49803164	rs7160151	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	C-reactive protein (red blood cell fatty acid level interaction)	2,703 individuals	NA	14q21.3	LOC105378178	rs7160151-?	0.290015234	3E-8	(EDA)	1.189542	[0.77-1.61] unit increase	Affymetrix [2500000] (imputed)	N
965	chr14	49831094	49831095	rs10483554	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	14q21.3	ATP5G2P2	rs10483554-G	NR	5E-6	(Defiant/Vindictive dimension)	1.482	[0.85-2.11] unit decrease	Illumina [1871025] (imputed)	N
965	chr14	49861855	49861856	rs150315280	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	14q21.3	RP11-326E7.1	rs150315280-T	0.982	9E-6		0.2182	[0.12-0.31] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
966	chr14	49939528	49939529	rs11846595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q21.3	Intergenic	rs11846595-T	0.8931	5E-11		0.0241	[0.017-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
966	chr14	49940824	49940825	rs57679537	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q21.3	Intergenic	rs57679537-T	0.8984	2E-9	(MTAG)	0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
966	chr14	49941646	49941647	rs57810758	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q21.3	Intergenic	rs57810758-A	0.895	6E-14	(MTAG)	0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
966	chr14	49945240	49945241	rs944433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q21.3	Intergenic	rs944433-T	0.1052	2E-11	(MTAG)	0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
966	chr14	49945240	49945241	rs944433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q21.3	Intergenic	rs944433-C	0.8948	1E-8		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
966	chr14	49951349	49951350	rs1530947	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	14q21.3	RPS29	rs1530947-T	0.80	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
967	chr14	50075318	50075319	rs28396798	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q21.3	MGAT2	rs28396798-T	0.547	1E-15	(Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, MGAT2.6909.40.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
967	chr14	50092470	50092471	rs9989177	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGAT2	5,360 Icelandic ancestry individuals	NA	14q21.3		rs9989177-T	0.4404	1E-20		0.175415	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
967	chr14	50101681	50101682	rs2985684	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	14q21.3	DNAAF2	rs2985684-?	NR	2E-6	(Age-sex-adjusted)			Illumina [32817]	N
967	chr14	50102652	50102653	rs113170157	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q21.3	MGAT2	rs113170157-G	0.441875	1E-9	(MGAT2, 6909_40_3)	0.14986004	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
967	chr14	50131845	50131846	rs3218791	32740585	Sood RF	2020-08-01	Plast Reconstr Surg	Genetic Risk of Trigger Finger: Results of a Genomewide Association Study.	Trigger finger	942 European ancestry cases, 24,472 European ancestry controls	NA	14q21.3	POLE2	rs3218791-T	0.202	1E-7		1.34	[1.20-1.49]	Illumina [7846471] (imputed)	N
967	chr14	50159178	50159179	rs4296170	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	14q21.3	TSPG3A	rs4296170-?	NR	8E-10				Illumina [747780]	N
967	chr14	50181227	50181228	rs186112202	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	14q21.3	NR	rs186112202-G		5E-6		0.3336	[0.19-0.48] SD units increase	NR [10700000] (imputed)	N
968	chr14	50206169	50206170	rs79503702	27402877	Hill-Burns EM	2016-07-11	Hum Mol Genet	Identification of genetic modifiers of age-at-onset for familial Parkinson's disease.	Parkinson's disease (familial, age at onset)	431 European ancestry cases	737 European ancestry cases	14q21.3	KLHDC1	rs79503702-?		5E-8		3.82	[NR]	Illumina [7200000] (imputed)	N
968	chr14	50293679	50293680	rs74496085	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	14q21.3	NR	rs74496085-G		7E-6		0.3187	[0.18-0.46] SD units decrease	NR [10700000] (imputed)	N
968	chr14	50310400	50310401	rs55846421	35047121	Gao Y	2021-12-01	World J Diabetes	Genome-wide association study reveals novel loci for adult type 1 diabetes in a 5-year nested case-control study.	Type 1 diabetes	381 Chinese ancestry cases, 377 Chinese ancestry controls	404 Chinese ancestry cases, 427 Chinese ancestry controls	14q21.3		rs55846421-?	NR	2E-9		0.113	[0.081-0.156]	NR [920636] (imputed)	N
969	chr14	50385981	50385982	rs58936650	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	14q21.3	ARF6	rs58936650-A	0.094	1E-5		0.16	[0.09-0.24] unit decrease	Affymetrix [7435577] (imputed)	N
969	chr14	50406176	50406177	rs565937031	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	14q21.3	LINC01588	rs565937031-A	0.0015	6E-6		0.9736	[0.55-1.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
969	chr14	50440473	50440474	rs3861491	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	14q21.3	MIR6076	rs3861491-A	0.361407	1E-26		0.00556571	[0.0045-0.0066] unit decrease	Affymetrix [13995440] (imputed)	N
969	chr14	50440473	50440474	rs3861491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q21.3	NR	rs3861491-G	NR	7E-14		0.0185	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
969	chr14	50441839	50441840	rs4271522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q21.3		rs4271522-T	NR	5E-14		0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
970	chr14	50464497	50464498	rs72680082	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	14q21.3	NR	rs72680082-?	NR	9E-6	(EA)			Illumina [1735619]	N
970	chr14	50469251	50469252	rs1956227	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01588	rs1956227-?	NR	3E-9	(male)	1.84026	[NR] unit decrease	Affymetrix [NR] (imputed)	N
970	chr14	50483446	50483450	rs142735410	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	14q21.3	NR	rs142735410-?	NR	1E-6		0.053866446	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
970	chr14	50485326	50485327	rs10138297	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Erythema nodosum in inflammatory bowel disease	103 European ancestry cases, 5,653 European ancestry controls	NA	14q21.3	ARF6, METTL21D, SOS2	rs10138297-G	NR	7E-6		2.63	[1.70-4.00]	Illumina [2017629] (imputed)	N
970	chr14	50486790	50486791	rs55643152	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	14q21.3	intergenic	rs55643152-T	0.0402	3E-6	(Primary)	1.0479	[0.61-1.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
970	chr14	50512110	50512111	rs72680099	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q21.3	VCPKMT	rs72680099-?	NR	4E-16		0.0036	[0.0026-0.0046] unit decrease	Affymetrix [21347608] (imputed)	N
970	chr14	50512110	50512111	rs72680099	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q21.3	VCPKMT	rs72680099-?	NR	1E-8		0.004	[0.0024-0.0056] unit decrease	Affymetrix [21347608] (imputed)	N
970	chr14	50512346	50512347	rs72680100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q21.3	NR	rs72680100-G	NR	7E-11		0.0426	[0.03-0.055] unit increase	Affymetrix [9000000] (imputed)	N
970	chr14	50512346	50512347	rs72680100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q21.3	NR	rs72680100-G	NR	3E-25		0.0647	[0.053-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
970	chr14	50512346	50512347	rs72680100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q21.3	NR	rs72680100-G	NR	1E-15		0.0496	[0.037-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
970	chr14	50523206	50523207	rs149386674	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q21.3	NR	rs149386674-?	NR	9E-9				Illumina [7760689] (imputed)	N
970	chr14	50567471	50567472	rs12586183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	14q21.3		rs12586183-T	0.447989	2E-8		0.0162545	[0.011-0.022] unit decrease	Illumina [13478778] (imputed)	N
971	chr14	50639994	50639995	rs147168872	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q21.3	NR	rs147168872-?	NR	9E-7	(Native Hawaiian)	1.1117	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
971	chr14	50655306	50655307	rs61755579	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q21.3	NR	rs61755579-T	0.0309	4E-9				NR [9056863] (imputed)	N
971	chr14	50655306	50655307	rs61755579	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	14q21.3	NR	rs61755579-C		1E-9		0.26	[0.18-0.34] unit increase	NR [NR]	N
971	chr14	50655306	50655307	rs61755579	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	14q21.3	SOS2	rs61755579-C	0.97	2E-10				Affymetrix, Illumina [8002429] (imputed)	N
971	chr14	50655306	50655307	rs61755579	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q21.3	SOS2	rs61755579-T	0.0277	1E-10		0.4186	[0.29-0.55] mmHg decrease	Affymetrix [NR] (imputed)	N
971	chr14	50655306	50655307	rs61755579	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	14q21.3	SOS2	rs61755579-?	NR	2E-10		0.245	[0.17-0.32] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
971	chr14	50655306	50655307	rs61755579	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	14q21.3	SOS2	rs61755579-C	0.97	4E-11		0.253	[0.18-0.33] unit increase	Affymetrix, Illumina [NR] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q21.3		rs72681869-C	0.01	6E-17		8.36	z score increase	Affymetrix [9061022] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q21.3		rs72681869-C	0.01	7E-12		6.87	z score increase	Affymetrix [9061022] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q21.3		rs72681869-C	0.01	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	6E-11		0.0705	[0.049-0.092] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	1E-16		0.0798	[0.061-0.099] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	5E-16		0.0747	[0.057-0.093] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	14q21.3		rs72681869-C	NR	1E-10		0.2411	[0.17-0.31] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	14q21.3		rs72681869-C	NR	3E-8		0.211	[0.14-0.29] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	14q21.3		rs72681869-C	NR	2E-14		0.2221	[0.17-0.28] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	3E-13		0.08	[0.059-0.101] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	4E-12		0.0789	[0.057-0.101] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q21.3		rs72681869-C	NR	2E-21		0.1011	[0.08-0.122] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q21.3	NR	rs72681869-C	0.0108	5E-10				NR [9056863] (imputed)	N
971	chr14	50655356	50655357	rs72681869	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	14q21.3		rs72681869-?	NR	1E-8		0.05	[0.03-0.07] unit decrease	Illumina [NR]	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	7E-16		0.0938	[0.071-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	4E-11		0.0768	[0.054-0.1] unit increase	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	4E-21		0.115	[0.091-0.139] unit increase	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	1E-10		0.0777	[0.054-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	5E-12		0.0818	[0.058-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	3E-16		0.0947	[0.072-0.117] unit increase	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	2E-16		0.0957	[0.073-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	3E-32		0.1374	[0.11-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q21.3	NR	rs72681869-C	NR	4E-21		0.1095	[0.087-0.132] unit decrease	Affymetrix [9000000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q21.3		rs72681869-C	0.01	2E-22		1.1048445	[0.88-1.33] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q21.3		rs72681869-C	0.0101	4E-10		0.5196944	[0.36-0.68] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	14q21.3		rs72681869-C	0.0099	1E-14		7.69193	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
971	chr14	50655356	50655357	rs72681869	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q21.3		rs72681869-C	0.01	2E-17		0.5982217	[0.46-0.74] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q21.3	SOS2	rs72681869-C	0.010982	6E-9		0.06150626	[0.041-0.082] unit increase	Affymetrix [93095623] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q21.3	SOS2	rs72681869-C	0.010983	8E-10		0.0652517	[0.044-0.086] unit increase	Affymetrix [93095623] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q21.3	NR	rs72681869-C	0.011073	9E-12		0.0419559	[0.03-0.054] unit increase	Affymetrix [16578495] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q21.3	NR	rs72681869-C	0.010925999999999991	4E-14		0.103393	[0.075-0.132] unit increase	Affymetrix [16577313] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q21.3	NR	rs72681869-C	0.011099999999999999	2E-25		0.0409435	[0.033-0.049] unit increase	Affymetrix [16582909] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q21.3	NR	rs72681869-C	0.01122500000000004	4E-16		0.0471611	[0.036-0.059] unit increase	Affymetrix [16585854] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q21.3	NR	rs72681869-C	0.011099999999999999	3E-31		0.0508521	[0.042-0.06] unit increase	Affymetrix [16582965] (imputed)	N
971	chr14	50655356	50655357	rs72681869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q21.3	NR	rs72681869-C	0.01122500000000004	1E-18		0.0594923	[0.046-0.073] unit increase	Affymetrix [16585866] (imputed)	N
971	chr14	50655356	50655357	rs72681869	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	14q21.3	SOS2	rs72681869-C	0.010732	6E-10		0.083626	[0.057-0.11] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
971	chr14	50655356	50655357	rs72681869	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	14q21.3	SOS2	rs72681869-C	0.0111769	1E-10		0.2410932	[0.17-0.31] unit decrease	Affymetrix [7288503] (imputed)	N
971	chr14	50655356	50655357	rs72681869	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	14q21.3	SOS2	rs72681869-C	0.0112732	3E-8		0.21103917	[0.14-0.29] unit decrease	Affymetrix [7288503] (imputed)	N
971	chr14	50655356	50655357	rs72681869	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	14q21.3	SOS2	rs72681869-C	0.0109838	2E-14		0.22207454	[0.17-0.28] unit decrease	Affymetrix [7288503] (imputed)	N
971	chr14	50655356	50655357	rs72681869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q21.3		rs72681869-?	NR	2E-17				NR [~ 8900000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q21.3		rs72681869-?	NR	4E-11				NR [~ 8900000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	14q21.3		rs72681869-?	NR	2E-18				NR [~ 8900000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q21.3		rs72681869-?	NR	2E-8				NR [~ 8900000] (imputed)	N
971	chr14	50655356	50655357	rs72681869	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q21.3	SOS2	rs72681869-G	0.9891	6E-11		0.4343	[0.3-0.57] unit increase	Affymetrix [~ 11900000] (imputed)	N
972	chr14	50730398	50730399	rs150821445	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	14q21.3	NR	rs150821445-AG		2E-6		0.5051	[0.3-0.71] SD units increase	NR [10700000] (imputed)	N
972	chr14	50735946	50735947	rs72683923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q21.3		rs72683923-C	NR	2E-12		0.0573	[0.041-0.073] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
972	chr14	50735946	50735947	rs72683923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q21.3		rs72683923-C	NR	5E-36		0.102	[0.086-0.118] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
972	chr14	50735946	50735947	rs72683923	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	14q21.3	L2HGDH	rs72683923-T	0.980228	3E-25		0.0143899	[0.012-0.017] unit increase	Affymetrix [13995440] (imputed)	N
972	chr14	50735946	50735947	rs72683923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q21.3	NR	rs72683923-C	0.019684000000000035	6E-15		0.0290782	[0.021-0.037] unit increase	Affymetrix [16582621] (imputed)	N
972	chr14	50735946	50735947	rs72683923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q21.3	NR	rs72683923-C	0.019684000000000035	3E-16		0.0339786	[0.025-0.043] unit increase	Affymetrix [16582614] (imputed)	N
972	chr14	50735946	50735947	rs72683923	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	14q21.3	L2HGDH	rs72683923-T	0.979	8E-9		0.0074	[0.0049-0.0099] unit decrease	Affymetrix [NR] (imputed)	N
972	chr14	50735946	50735947	rs72683923	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	14q21.3	L2HGDH	rs72683923-T	0.979	2E-8	(EA)	0.0076	[0.0049-0.0103] unit decrease	Affymetrix [NR] (imputed)	N
972	chr14	50735946	50735947	rs72683923	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q21.3	L2HGDH	rs72683923-T	0.9791	3E-15		0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
972	chr14	50735946	50735947	rs72683923	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q21.3	L2HGDH	rs72683923-T	0.979	1E-15		0.0076	[0.0049-0.0103] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
972	chr14	50735946	50735947	rs72683923	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	14q21.3	SOS2, L2HGDH	rs72683923-C	0.0109	3E-8		5.542	NR z score increase	Illumina [26237160] (imputed)	N
972	chr14	50735946	50735947	rs72683923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q21.3		rs72683923-?	NR	1E-14				NR [~ 8900000] (imputed)	N
972	chr14	50735946	50735947	rs72683923	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q21.3	L2HGDH	rs72683923-T	0.9797	1E-25		0.9769	[0.79-1.16] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
972	chr14	50749923	50749924	rs8019274	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q21.3	L2HGDH	rs8019274-G	0.546998	2E-11	(2-hydroxyglutarate)	0.156	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
972	chr14	50749923	50749924	rs8019274	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	14q21.3	L2HGDH	rs8019274-G	0.546998	2E-11	(2-hydroxyglutarate)	0.156	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
972	chr14	50808253	50808254	rs11625524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q21.3	NR	rs11625524-C	0.50023	1E-13		0.014347	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
972	chr14	50811024	50811025	rs1465160	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q21.3	NR	rs1465160-T	0.561453	4E-11				Affymetrix, Illumina [20825802] (imputed)	N
972	chr14	50811024	50811025	rs1465160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q21.3		rs1465160-?	NR	2E-12				NR [~ 8900000] (imputed)	N
972	chr14	50813975	50813976	rs12432093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q21.3	CDKL1	rs12432093-A	0.501001	9E-10		0.0136274	[0.0096-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr14	50813975	50813976	rs12432093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q21.3	CDKL1	rs12432093-A	0.501001	1E-10		0.014231678	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr14	50814529	50814530	rs11621764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q21.3	NR	rs11621764-T	0.500212	1E-12		0.013603	[0.0099-0.0173] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
972	chr14	50829559	50829560	rs142004400	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	14q21.3		rs142004400-?	NR	3E-8		0.0310034	[0.02-0.042] unit decrease	NR [6912294] (imputed)	N
972	chr14	50849396	50849397	rs72677850	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q21.3	CDKL1	rs72677850-A	0.0197	2E-16		0.9133	[0.7-1.13] mmHg decrease	Affymetrix [NR] (imputed)	N
973	chr14	50856640	50856641	rs3783412	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	14q21.3	CDKL1, MAP4K5, ATL1, NIN, SOS2, L2HGDH, ATP5S, SAV1	rs3783412-?	0.53	8E-6	(PD2)	1.85	[NR]	Illumina [~ 1400000] (imputed)	N
973	chr14	50856881	50856882	rs61981931	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) (adjusted for APOE e4 carrier status)	10,216 European ancestry individuals	9,261 European ancestry individuals	14q21.3		rs61981931-?	NR	2E-6		0.824		NR [110450]	N
973	chr14	50857631	50857632	rs10134101	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q21.3	CDKL1	rs10134101-A	0.96	3E-13		7.28	z-score increase	Affymetrix [4314223] (imputed)	N
973	chr14	50877982	50877983	rs1265879	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	CDKL1	rs1265879-?	NR	4E-6	(TrailsA)			Illumina [up to 563855]	N
973	chr14	50923248	50923249	rs12881869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q22.1		rs12881869-T	NR	8E-12		0.033	[0.024-0.042] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
973	chr14	50923248	50923249	rs12881869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q22.1		rs12881869-T	NR	3E-25		0.0492	[0.04-0.058] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
973	chr14	50923248	50923249	rs12881869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q22.1		rs12881869-T	NR	2E-14		0.0299	[0.022-0.038] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
973	chr14	50923248	50923249	rs12881869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q22.1	MAP4K5, RP11-406H23.2	rs12881869-T	NR	9E-10		0.0348689	[0.024-0.046] unit increase	Affymetrix [321788] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q22.1	MAP4K5	rs12881869-T	0.070866	4E-16		0.03508435	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q22.1	MAP4K5	rs12881869-T	0.070873	2E-11		0.02888039	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs12881869-T	0.0550644	6E-17				Affymetrix, Illumina [24332387] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q22.1	NR	rs12881869-T	0.070387	1E-19		0.032707	[0.026-0.04] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs12881869-T	0.0554537	9E-14				Affymetrix, Illumina [24653286] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q22.1	NR	rs12881869-T	0.070375	3E-16		0.029525	[0.022-0.037] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
973	chr14	50923248	50923249	rs12881869	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q22.1	MAP4K5	rs12881869-T		2E-14		0.033	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
973	chr14	50923248	50923249	rs12881869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q22.1		rs12881869-?	NR	6E-20				NR [~ 8900000] (imputed)	N
973	chr14	50941643	50941644	rs2356251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q22.1	NR	rs2356251-C	NR	3E-12		0.0398	[0.029-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
973	chr14	50941643	50941644	rs2356251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q22.1	NR	rs2356251-C	NR	4E-10		0.0356	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
973	chr14	50948009	50948010	rs138885196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.1	MAP4K5	rs138885196-A	0.049556	4E-13		0.039524764	[0.029-0.05] unit increase	Affymetrix [93095623] (imputed)	N
973	chr14	50960169	50960170	rs72679504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	14q22.1		rs72679504-A	NR	6E-13		0.042	[0.031-0.053] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
973	chr14	50960169	50960170	rs72679504	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	14q22.1	NR	rs72679504-A	0.040366	5E-10		0.031759	[0.022-0.042] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
973	chr14	50960917	50960918	rs71420186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q22.1		rs71420186-A	NR	2E-10		0.0241	[0.017-0.032] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	8E-6	(females)	0.02821	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	3E-8	(males)	0.03807	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	1E-12		0.03296	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	3E-8	(females)	0.03284	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	2E-18		0.03842	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	14q22.1	MAP4K5, SAV1, SPG3A	rs71420186-A	0.0644886	1E-11	(males)	0.04477	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
973	chr14	50960917	50960918	rs71420186	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.1	MAP4K5	rs71420186-G	0.933864	2E-9		0.0224927	[0.015-0.03] unit increase	NR [13737936] (imputed)	N
973	chr14	50973631	50973632	rs17718580	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	MAP4K5	rs17718580-?	NR	8E-7	(TrailsA)			Illumina [up to 563855]	N
974	chr14	50987196	50987197	rs61984297	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MAP4K5	rs61984297-?	NR	2E-9	(female)	1.49787	[NR] unit increase	Affymetrix [NR] (imputed)	N
974	chr14	51000769	51000770	rs17718872	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q22.1	NR	rs17718872-T	0.1445	1E-8		0.001733	[0.0011-0.0024] unit increase	Affymetrix [NR] (imputed)	N
974	chr14	51041043	51041044	rs112667879	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ATL1	rs112667879-?	NR	2E-9	(female)	1.49861	[NR] unit increase	Affymetrix [NR] (imputed)	N
974	chr14	51062161	51062162	rs3015455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q22.1		rs3015455-?	NR	1E-9				NR [~ 8900000] (imputed)	N
974	chr14	51074460	51074461	rs1032466	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	14q22.1	ATL1, MAP4K5, SAV1	rs1032466-?	0.694	2E-17		1.2224939	[1.17-1.28]	Illumina [238825]	N
974	chr14	51084234	51084235	rs17122693	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	ATL1, SPG3A	rs17122693-?	NR	3E-7	(TrailsA)			Illumina [up to 563855]	N
974	chr14	51093141	51093142	rs2356455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	14q22.1		rs2356455-?	NR	9E-8				NR [~ 8900000] (imputed)	N
974	chr14	51093744	51093745	rs2934679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.1		rs2934679-?	NR	5E-9				NR [~ 8900000] (imputed)	N
974	chr14	51108109	51108110	rs33964457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q22.1		rs33964457-T	NR	9E-13		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
974	chr14	51108523	51108524	rs3015501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs3015501-C	0.437566	3E-70				Affymetrix, Illumina [17210439] (imputed)	N
974	chr14	51108523	51108524	rs3015501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q22.1	NR	rs3015501-C	0.437369	3E-67		0.033549	[0.03-0.037] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
974	chr14	51113397	51113398	rs3015497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q22.1	SAV1	rs3015497-C	0.563	6E-18		0.03151499	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
975	chr14	51122632	51122633	rs8018308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.1	SAV1	rs8018308-C	0.562498	4E-41		0.03107132	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
975	chr14	51132621	51132622	rs550463489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q22.1	SAV1	rs550463489-C	8.04999999999945E-4	6E-13		0.30646914	[0.22-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr14	51132621	51132622	rs550463489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.1	SAV1	rs550463489-C	8.04000000000027E-4	1E-29		0.48068482	[0.4-0.56] unit increase	Affymetrix [93095623] (imputed)	N
975	chr14	51133286	51133287	rs2934701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q22.1	SAV1	rs2934701-T	0.426215	3E-12		0.01592247	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr14	51133286	51133287	rs2934701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs2934701-T	0.374703	4E-19				Affymetrix, Illumina [24588908] (imputed)	N
975	chr14	51133286	51133287	rs2934701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q22.1	NR	rs2934701-T	0.425844	2E-20		0.017247	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
975	chr14	51139790	51139790	rs5808566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q22.1	SAV1	rs5808566-GC	0.561229	2E-14		0.017457504	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr14	51143138	51143139	rs12889834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q22.1	NR	rs12889834-G	NR	2E-14		0.0344	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr14	51143138	51143139	rs12889834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	14q22.1	NR	rs12889834-G	NR	2E-10		0.0276	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
975	chr14	51154361	51154362	rs12323717	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.1	SAV1	rs12323717-A	0.641231	4E-11		0.0130167	[0.0091-0.0169] unit decrease	NR [13737936] (imputed)	N
975	chr14	51154361	51154362	rs12323717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.1		rs12323717-?	NR	4E-14				NR [~ 8900000] (imputed)	N
975	chr14	51154361	51154362	rs12323717	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.1		rs12323717-?	NR	2E-14		0.0165738	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
975	chr14	51157159	51157160	rs3015469	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-40)	3,528 European ancestry individuals	NA	14q22.1	SAV1	rs3015469-G	0.314	8E-7		0.11	[0.071-0.149] unit increase	Illumina [2316178] (imputed)	N
975	chr14	51170878	51170879	rs8020441	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q22.1	NIN	rs8020441-?	NR	5E-7	(TrailsA)			Illumina [up to 563855]	N
975	chr14	51186412	51186413	rs183132916	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	14q22.1	Intergenic	rs183132916-G	NR	3E-6		0.157487	[0.092-0.223] unit decrease	Illumina [13520550] (imputed)	N
975	chr14	51201710	51201711	rs10148309	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q22.1	NIN	rs10148309-C	0.85	6E-12		6.88	z-score increase	Affymetrix [4312306] (imputed)	N
975	chr14	51201710	51201711	rs10148309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q22.1		rs10148309-?	NR	1E-9				NR [~ 8900000] (imputed)	N
975	chr14	51201710	51201711	rs10148309	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q22.1	NR	rs10148309-T	0.147683	1E-9		0.0266137	[0.018-0.035] unit decrease	NR [19129689] (imputed)	N
975	chr14	51207740	51207741	rs72681698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	14q22.1	NIN	rs72681698-C	0.0349	4E-18		1.276	[0.99-1.56] mmHg decrease	Affymetrix [NR] (imputed)	N
975	chr14	51207740	51207741	rs72681698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	14q22.1	NIN	rs72681698-C	0.0349	1E-9		0.6411	[0.43-0.85] mmHg decrease	Affymetrix [NR] (imputed)	N
975	chr14	51207740	51207741	rs72681698	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	14q22.1	NIN	rs72681698-C	0.0349	4E-13		0.65	[0.47-0.83] mmHg decrease	Affymetrix [NR] (imputed)	N
975	chr14	51208672	51208673	rs146291102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q22.1	NIN	rs146291102-A	9.0E-4	2E-11		0.4472736	[0.32-0.58] unit increase	Affymetrix [~ 2500000] (imputed)	N
975	chr14	51218770	51218771	rs7494766	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	14q22.1	NIN	rs7494766-G	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
975	chr14	51228911	51228912	rs77155321	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	14q22.1	NIN	rs77155321-A	NR	3E-7	(sample size weighted)	5.154	NR z score increase	Affymetrix, Illumina [~ 16900000] (imputed)	N
975	chr14	51234159	51234160	rs8012283	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	14q22.1	MAP4K5, NIN, SPG3A, SAV1	rs8012283-G		3E-7	(Additive)	1.64	[1.35-1.98]	Affymetrix, Illumina [1621689] (imputed)	N
975	chr14	51239180	51239181	rs61755581	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	14q22.1	NR	rs61755581-?	NR	1E-6		1.3394284	[1.19-1.51]	Affymetrix, Illumina [~ 10400000] (imputed)	N
976	chr14	51264125	51264126	rs76096589	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	14q22.1	intergenic	rs76096589-A	0.01	7E-6		5.83	[2.45-13.86]	Illumina [1556551]	N
976	chr14	51270266	51270267	rs9788504	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q22.1	SAV1, NIN	rs9788504-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
976	chr14	51283147	51283148	rs7149295	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Delta electroencephalogram power	191 European ancestry individuals	NA	14q22.1	NR	rs7149295-?	NR	5E-6		0.09	NR unit increase	Affymetrix [388620]	N
976	chr14	51313589	51313590	rs11627172	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q22.1	NR	rs11627172-?		6E-6				Illumina [4322238] (imputed)	N
976	chr14	51317417	51317418	rs7493885	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (time to childhood onset) x early life tobacco smoke interaction	3,187 European ancestry exposed individuals, 5,086 European ancestry unexposed individuals	NA	14q22.1	NIN	rs7493885-G	0.27	3E-6		1.37	[1.20-1.56]	Illumina [2110000] (imputed)	N
976	chr14	51323741	51323742	rs8019546	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	14q22.1	NR	rs8019546-A	0.3	5E-6	(Carbohydrate)	0.22	[0.12-0.32] % increase	Affymetrix, Illumina [2500000] (imputed)	N
976	chr14	51326165	51326166	rs1953884	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	14q22.1	NR	rs1953884-?		4E-7	(PCB169)	0.25	[0.15-0.35] unit increase	Illumina [8736858] (imputed)	N
976	chr14	51332334	51332335	rs17123039	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	14q22.1	ABHD12B	rs17123039-T	0.581866	8E-9	(EA)	0.00725318	[0.0048-0.0097] unit increase	Affymetrix [~ 8800000] (imputed)	N
976	chr14	51359657	51359658	rs28611105	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Rectal cancer	16,212 European ancestry cases, 64,159 European ancestry controls	NA	14q22.1	PYGL, NIN, ABHD12B	rs28611105-G	0.215	5E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [11358342] (imputed)	N
976	chr14	51378516	51378517	rs35026927	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q22.1	PYGL	rs35026927-G	0.008	7E-13	(Glycogen phosphorylase, liver form, PYGL.11441.11.3)	1.11	[0.82-1.4] unit decrease	Affymetrix [10572788] (imputed)	N
977	chr14	51394479	51394480	rs8022952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	14q22.1		rs8022952-T	NR	1E-9		0.0798	[0.054-0.106] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
977	chr14	51403530	51403531	rs7142143	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	14q22.1	PYGL	rs7142143-C	0.01	7E-9		3.61	[2.34-5.57]	Affymetrix [444044]	N
977	chr14	51404266	51404267	rs17123212	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q22.1	NR	rs17123212-C	NR	5E-9		0.0501	[0.033-0.067] unit increase	Affymetrix [9000000] (imputed)	N
977	chr14	51411478	51411479	rs2297890	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q22.1	PYGL	rs2297890-C	0.3578125	3E-6	(PYGL, 11441_11_3)	0.12196548	[0.071-0.173] unit decrease	Illumina [> 1000000] (imputed)	N
977	chr14	51446770	51446771	rs1959536	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	14q22.1	PYGL, TRIM9	rs1959536-?		8E-7				Affymetrix [545513]	N
977	chr14	51495697	51495698	rs1556929	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	14q22.1	TRIM9	rs1556929-C	0.13	9E-6	(Women)	0.014684178	[0.0082-0.0212] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
978	chr14	51530852	51530853	rs4077265	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q22.1	TRIM9	rs4077265-?	NR	9E-6		0.169	[0.093-0.245] unit increase	Illumina [at least 13000000] (imputed)	N
978	chr14	51536145	51536146	rs4243569	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to carbamazepine in focal epilepsy	424 European ancestry cases, 591 European ancestry controls	NA			rs4243569-?	NR	5E-6				Illumina [NR] (imputed)	N
978	chr14	51568945	51568946	rs12589468	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	14q22.1		rs12589468-?	NR	6E-6		0.229	[0.13-0.33] unit increase	Illumina [5082878] (imputed)	N
979	chr14	51647661	51647662	rs3007163	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.1	NR	rs3007163-?	NR	5E-148				Affymetrix [NR]	N
979	chr14	51704789	51704790	rs10142203	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	14q22.1	TRIM9, TMX1	rs10142203-?	NR	7E-6				Illumina [491617]	N
979	chr14	51769015	51769016	rs10145269	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	14q22.1	NR	rs10145269-T	0.2507	5E-6		1.185677	[1.11-1.26]	Illumina [8567708] (imputed)	N
980	chr14	51827797	51827798	rs139706713	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	14q22.1		rs139706713-A	0.01137	3E-6		2.771	[1.809-4.245]	Affymetrix [7975321] (imputed)	N
980	chr14	51839644	51839645	rs7148069	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	14q22.1	LOC283553	rs7148069-A	0.19	2E-8		1.22		Illumina [803202]	N
980	chr14	51856108	51856109	rs4901118	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	14q22.1	RP11-255G12.2, TMX1, FRMD6, LINC00640	rs4901118-A		7E-10	(All)			NR [8012124] (imputed)	N
980	chr14	51856108	51856109	rs4901118	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	14q22.1	RP11-255G12.2, TMX1, FRMD6, LINC00640	rs4901118-A		2E-7	(EA)			NR [8012124] (imputed)	N
981	chr14	51919821	51919822	rs7153703	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	14q22.1	FRMD6	rs7153703-?	NR	3E-6		0.006	[NR] unit increase	Illumina [478011]	N
981	chr14	51956233	51956234	rs10484092	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	14q22.1	FRMD6-AS2	rs10484092-?	NR	5E-7				Illumina [622468]	N
981	chr14	52010798	52010799	rs7140150	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	14q22.1	FRMD6	rs7140150-?	0.46	5E-7				Illumina [448293]	N
982	chr14	52057061	52057062	rs113552661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs113552661-T	0.0122	3E-8	(ME1)	0.1329	NR unit decrease	Illumina [1671387] (imputed)	N
982	chr14	52074206	52074207	rs12879264	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	14q22.1	NR	rs12879264-?	NR	9E-6	(Native Hawaiian)	0.2555	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
982	chr14	52077088	52077089	rs1006973	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	14q22.1	FRMD6	rs1006973-?	NR	8E-6	(PC)			Illumina [283437]	N
982	chr14	52132235	52132236	rs12434533	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q22.1	FRMD6	rs12434533-T	0.0145698717402068	8E-7	(G_Sutterella_RNT)	0.655136	[0.4-0.92] unit increase	Illumina [7711310] (imputed)	N
983	chr14	52209868	52209869	rs8003600	33574088	Mocci E	2021-02-11	Cancer Res	Smoking modifies pancreatic cancer risk loci on 2q21.3.	Pancreatic ductal adenocarcinoma x smoking interaction	7,937  European ancestry cases, 11,774 European ancestry controls	NA	14q22.1	NR	rs8003600-T	NR	2E-7				Illumina [6769447] (imputed)	N
983	chr14	52233275	52233276	rs11626056	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	14q22.1	FRMD6	rs11626056-?	NR	1E-6				Illumina [516645]	N
983	chr14	52239509	52239510	rs148927240	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	14q22.1		rs148927240-?	NR	2E-8		4.23029	[2.55-7.01]	NR [NR] (imputed)	N
983	chr14	52266356	52266357	rs201612157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs201612157-C	NR	2E-8		0.0333164	[0.022-0.045] unit decrease	Affymetrix [319769] (imputed)	N
983	chr14	52266356	52266357	rs201612157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs201612157-C	NR	1E-8		0.0341244	[0.022-0.046] unit decrease	Affymetrix [319769] (imputed)	N
983	chr14	52275526	52275527	rs34706081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs34706081-T	NR	2E-8		0.0249957	[0.016-0.034] unit decrease	Affymetrix [319769] (imputed)	N
983	chr14	52275526	52275527	rs34706081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs34706081-T	NR	8E-9		0.0255245	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
983	chr14	52275526	52275527	rs34706081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs34706081-T	NR	2E-11		0.0297202	[0.021-0.038] unit decrease	Affymetrix [321114] (imputed)	N
983	chr14	52275526	52275527	rs34706081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q22.1	RP11-280K24.4	rs34706081-T	NR	2E-10		0.0284017	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
983	chr14	52286391	52286392	rs35072154	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q22.1	NR	rs35072154-T	0.3652	3E-6	(EA)	0.0301	[0.018-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
983	chr14	52288107	52288108	rs188838161	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.1	Intergenic	rs188838161-T	0.999	2E-6	(AA)	0.527	unit increase	Illumina [NR] (imputed)	N
983	chr14	52293778	52293779	rs192549394	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q22.1	FRMD6, GNG2	rs192549394-G	0.01	2E-6		0.3724	[0.22-0.53] unit increase	Illumina [~ 9000000] (imputed)	N
983	chr14	52293778	52293779	rs192549394	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q22.1	FRMD6, GNG2	rs192549394-G	0.01	1E-6	(EA)	0.3949	[0.24-0.55] unit increase	Illumina [~ 9000000] (imputed)	N
984	chr14	52306090	52306091	rs11852059	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q22.1	FRMD6	rs11852059-C	NR	1E-9		1.0950503	NR	Affymetrix, Illumina [8278136] (imputed)	N
984	chr14	52307477	52307478	rs183755958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.1	Intergenic	rs183755958-T	1.0	7E-7	(AA)	0.551	unit increase	Illumina [NR] (imputed)	N
984	chr14	52309212	52309213	rs2790503	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q22.1	FRMD6, FRMD6-AS1, GNG2, LOC102723604	rs2790503-?	NR	6E-6		0.0121	[0.012-0.012] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
984	chr14	52309212	52309213	rs2790503	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q22.1	FRMD6, FRMD6-AS1, GNG2, LOC102723604	rs2790503-?	NR	3E-7	(EA)	0.0126	[0.012-0.013] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
984	chr14	52310103	52310104	rs8015138	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	14q22.1	GNG2	rs8015138-C	NR	7E-8		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
984	chr14	52321986	52321987	rs140664623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q22.1	GNG2	rs140664623-T	NR	9E-12		0.0629327	[0.045-0.081] unit decrease	Affymetrix [319769] (imputed)	N
984	chr14	52321986	52321987	rs140664623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	GNG2	rs140664623-T	NR	2E-12		0.0650794	[0.047-0.083] unit decrease	Affymetrix [319769] (imputed)	N
984	chr14	52321986	52321987	rs140664623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q22.1	GNG2	rs140664623-T	NR	3E-8		0.0517315	[0.033-0.07] unit decrease	Affymetrix [321169] (imputed)	N
984	chr14	52321986	52321987	rs140664623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q22.1	NR	rs140664623-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
984	chr14	52321986	52321987	rs140664623	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	14q22.1	NR	rs140664623-T	0.023	4E-8		0.0366	[0.023-0.05] unit decrease	NR [~ 27400000] (imputed)	N
984	chr14	52332245	52332246	rs192180133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.1	GNG2	rs192180133-C	0.999	2E-6	(AA)	0.519	unit increase	Illumina [NR] (imputed)	N
984	chr14	52363936	52363937	rs117311385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q22.1	GNG2	rs117311385-G	NR	6E-9		0.0513731	[0.034-0.069] unit decrease	Affymetrix [319769] (imputed)	N
984	chr14	52363936	52363937	rs117311385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	GNG2	rs117311385-G	NR	3E-9		0.0522133	[0.035-0.07] unit decrease	Affymetrix [319769] (imputed)	N
984	chr14	52363936	52363937	rs117311385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q22.1	GNG2	rs117311385-G	NR	3E-8		0.0491592	[0.032-0.067] unit decrease	Affymetrix [321169] (imputed)	N
984	chr14	52365773	52365774	rs1316298	24658283	Zhang R	2014-03-22	Carcinogenesis	A genome-wide gene-environment interaction analysis for tobacco smoke and lung cancer susceptibility.	Lung cancer (smoking interaction)	1,506 Han Chinese ancestry smoker cases, 825 Han Chinese ancestry non-smoker cases, 1,309 Han Chinese ancestry smoker controls, 1,768 Han Chinese ancestry non-smoker controls	912 Han Chinese ancestry smoker cases, 622 Han Chinese ancestry non-smoker cases, 572 Han Chinese ancestry smoker controls, 917 Han Chinese ancestry non-smoker controls	14q22.1	GNG2, NID2, FRMD6	rs1316298-T		7E-6		1.41	[1.2-1.71]	Affymetrix [591370]	N
984	chr14	52371312	52371313	rs11157866	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	14q22.1	NR	rs11157866-?		6E-6		2.5	[1.68-3.73]	Illumina [539473] (imputed)	N
984	chr14	52384485	52384486	rs192692653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.1	GNG2	rs192692653-T	1.0	4E-7	(AA)	0.571	unit increase	Illumina [NR] (imputed)	N
984	chr14	52403683	52403684	rs11625461	25584925	Chen W	2015-01-13	Ann Am Thorac Soc	A genome-wide association study of chronic obstructive pulmonary disease in Hispanics.	Chronic obstructive pulmonary disease	94 Costa Rican founder population smoker cases, 412 Costa Rican founder population smoker controls, 63 Hispanic ancestry cases, 619 Hispanic ancestry controls	47 Hispanic ancestry smoker cases, 290 Hispanic ancestry smoker controls	14q22.1	GNG2	rs11625461-C	0.89	4E-6		1.5	[NR] unit decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
984	chr14	52425505	52425506	rs17124780	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	14q22.1	GNG2	rs17124780-G	0.289925	6E-8		6.73	[4.3-9.16] unit decrease	Affymetrix [NR] (imputed)	N
985	chr14	52436004	52436005	rs76213020	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	14q22.1	GNG2	rs76213020-?	NR	1E-8		0.04521	[0.03-0.061] unit increase novel	Illumina [6108953] (imputed)	N
985	chr14	52436734	52436735	rs950010	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	14q22.1	NR	rs950010-G	NR	2E-7	(GEE model)	0.96362	[0.6-1.33] unit decrease	NR [NR] (imputed)	N
985	chr14	52463152	52463153	rs1253682	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q22.1	NR	rs1253682-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
985	chr14	52476538	52476539	rs61971548	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	14q22.1	NR	rs61971548-T	0.2	1E-7		0.006	[0.004-0.008] unit decrease	Affymetrix [NR] (imputed)	N
985	chr14	52480620	52480621	rs6572807	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q22.1	NID2	rs6572807-A	0.732936	3E-8		0.0125047	[0.0081-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
985	chr14	52480620	52480621	rs6572807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q22.1	NR	rs6572807-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
985	chr14	52482767	52482768	rs1151582	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q22.1	NID2	rs1151582-T	0.457	3E-64	(Nidogen-2, NID2.3633.70.5)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
985	chr14	52490103	52490104	rs10137847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	14q22.1		rs10137847-T	NR	6E-11		0.0611	[0.043-0.079] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
985	chr14	52491753	52491754	rs2516599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q22.1		rs2516599-?	NR	4E-11				NR [~ 8900000] (imputed)	N
985	chr14	52493067	52493068	rs2749870	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q22.1	NR	rs2749870-G	0.44609375	3E-190	(NID2, 3633_70_5)	0.68224597	[0.64-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
985	chr14	52493067	52493068	rs2749870	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q22.1	NR	rs2749870-G	0.44609375	2E-9	(CGREF1, 6257_56_3)	0.14969832	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
985	chr14	52494636	52494637	rs55874437	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NID2	5,363 Icelandic ancestry individuals	NA	14q22.1		rs55874437-A	0.1021	7E-108		0.659284	[0.6-0.72] unit decrease	Illumina [7506463] (imputed)	N
985	chr14	52506440	52506441	rs142859682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	NID2	rs142859682-A	NR	4E-8		0.0515155	[0.033-0.07] unit decrease	Affymetrix [319769] (imputed)	N
985	chr14	52509062	52509063	rs17831525	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NID2	5,363 Icelandic ancestry individuals	NA	14q22.1		rs17831525-A	0.03907	2E-172		1.2813	[1.19-1.37] unit increase	Illumina [7506463] (imputed)	N
985	chr14	52509062	52509063	rs17831525	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q22.1	NR	rs17831525-A	0.032	6E-28	(Nidogen-2, NID2.3633.70.5)	0.76	[0.62-0.9] unit increase	Affymetrix [10572788] (imputed)	N
985	chr14	52509100	52509101	rs1982963	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	14q22.1	NID2	rs1982963-A	0.8082562429786551	9E-16	(East Asian women)	0.06257	[0.047-0.078] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
985	chr14	52509100	52509101	rs1982963	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist-to-hip ratio adjusted for body mass index	up to 39,869 East Asian individuals	up to 20,137 East Asian individuals, up to 209,947 individuals	14q22.1	NID2	rs1982963-A	0.808	1E-14	(East Asian)	0.048	[0.036-0.06] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
985	chr14	52511910	52511911	rs75766425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	14q22.1		rs75766425-C	0.130627	3E-13		0.0294035	[0.022-0.037] unit increase	Illumina [13479924] (imputed)	N
985	chr14	52511910	52511911	rs75766425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	14q22.1		rs75766425-C	NR	2E-8		0.0336	[0.022-0.045] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
985	chr14	52511910	52511911	rs75766425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	14q22.1		rs75766425-C	0.129617	2E-8		0.0335687	[0.022-0.045] unit decrease	Illumina [13471903] (imputed)	N
985	chr14	52511910	52511911	rs75766425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q22.1		rs75766425-C	NR	5E-11		0.0311	[0.022-0.04] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
985	chr14	52511910	52511911	rs75766425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	14q22.1		rs75766425-C	0.130549	5E-11		0.0310889	[0.022-0.04] unit increase	Illumina [13479178] (imputed)	N
985	chr14	52511910	52511911	rs75766425	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	14q22.1	NID2	rs75766425-?	NR	1E-8		0.0379	[0.025-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
985	chr14	52511910	52511911	rs75766425	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q22.1	NID2	rs75766425-C	0.127	1E-10	(Japanese)	0.034	[0.024-0.044] unit increase	Illumina [6108953] (imputed)	N
985	chr14	52511968	52511969	rs79823890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q22.1		rs79823890-T	NR	3E-13		0.0295	[0.022-0.037] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
985	chr14	52514911	52514912	rs1566129	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	14q22.1	NID2	rs1566129-T	41.62	4E-15	(additive)	1.04	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
985	chr14	52514911	52514912	rs1566129	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	14q22.1		rs1566129-?	NR	7E-11		6.517403	z score decrease	Affymetrix [NR] (imputed)	N
985	chr14	52516305	52516306	rs11316906	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	14q22.1	NR	rs11316906-CA	0.4279	5E-7		0.1546	[0.095-0.214] unit increase	Illumina [10677593] (imputed)	N
985	chr14	52518810	52518811	rs730532	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	14q22.1	NID2	rs730532-?	NR	6E-6	(ppFEF)			Affymetrix [70897]	N
985	chr14	52520745	52520746	rs35657569	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CGREF1	5,355 Icelandic ancestry individuals	NA	14q22.1		rs35657569-T	0.1045	2E-16		0.240546	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
985	chr14	52525561	52525562	rs12586602	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q22.1	NID2	rs12586602-G	0.0761006846131276	7E-7	(G_unclassified_K_Bacteria_HB)	0.472666	[0.29-0.66] unit decrease	Illumina [7711310] (imputed)	N
985	chr14	52527186	52527187	rs754423	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	14q22.1	NID2, GNG2, TCONS_00022504, TCONS_00022745, C14orf166	rs754423-C	0.47	1E-7		1.27	[1.16-1.38]	Illumina [792342]	N
985	chr14	52531407	52531408	rs146182298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q22.1	NID2	rs146182298-T	NR	4E-9		0.0427412	[0.028-0.057] unit increase	Affymetrix [319769] (imputed)	N
985	chr14	52531407	52531408	rs146182298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q22.1	NID2	rs146182298-T	NR	2E-9		0.043705	[0.029-0.058] unit increase	Affymetrix [319769] (imputed)	N
985	chr14	52531407	52531408	rs146182298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q22.1	NR	rs146182298-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
985	chr14	52531407	52531408	rs146182298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q22.1		rs146182298-?	NR	7E-11				NR [~ 8900000] (imputed)	N
985	chr14	52531994	52531995	rs1497083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q22.1	NID2	rs1497083-A	NR	2E-8		0.0184126	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
986	chr14	52574575	52574576	rs35828909	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q22.1	NID2	rs35828909-A	0.447405	2E-8		0.0110498	[0.0072-0.0149] unit increase	Affymetrix [NR] (imputed)	N
986	chr14	52581892	52581893	rs111849006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q22.1	NR	rs111849006-A	NR	5E-9		0.0195	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
986	chr14	52581892	52581893	rs111849006	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q22.1	NID2	rs111849006-G	0.818784	2E-8		0.0146667	[0.0096-0.0198] unit decrease	Affymetrix [NR] (imputed)	N
986	chr14	52604842	52604843	rs72680374	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	14q22.1	NID2	rs72680374-T	0.63	2E-6				Affymetrix, Illumina [9900000] (imputed)	N
986	chr14	52604842	52604843	rs72680374	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	14q22.1	NID2	rs72680374-T	0.63	1E-7		0.032	[0.02-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
986	chr14	52604842	52604843	rs72680374	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	14q22.1	NID2	rs72680374-T	NR	5E-8		0.0322	[0.021-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
986	chr14	52618826	52618827	rs62003467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q22.1		rs62003467-?	NR	8E-12				NR [~ 8900000] (imputed)	N
986	chr14	52621944	52621945	rs941616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs941616-T	0.538022	4E-10				Affymetrix, Illumina [19872809] (imputed)	N
986	chr14	52644006	52644007	rs10134414	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Salty taste perception in obesity with metabolic syndrome	378 individuals	NA	14q22.1	intergenic	rs10134414-A	0.132	8E-6	(adjusted for sex and age)	0.553	[0.29-0.82] unit decrease	Illumina [622468]	N
987	chr14	52696281	52696282	rs4901258	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	14q22.1	NR	rs4901258-?	NR	2E-6	(AA)	1.44	[NR]	Affymetrix, Illumina [NR] (imputed)	N
987	chr14	52721578	52721579	rs182584439	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	14q22.1	PTGDR	rs182584439-T	0.006	1E-6		0.2333	[0.14-0.33] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
987	chr14	52777612	52777613	rs1254603	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.1	NR	rs1254603-?	NR	1E-6				Affymetrix [NR]	N
988	chr14	52864236	52864237	rs6572843	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q22.1	NR	rs6572843-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
988	chr14	52884354	52884355	rs10143866	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	14q22.1	TXNDC16	rs10143866-T	0.117	2E-6		1.472	[NR] unit decrease	Illumina [1216189] (imputed)	N
988	chr14	52888412	52888413	rs1692041	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	14q22.1	NR	rs1692041-T	NR	6E-6	(male)	0.1202	[0.068-0.172] unit decrease	Illumina [11133794] (imputed)	N
988	chr14	52896930	52896931	rs2125249	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q22.1	NR	rs2125249-?	NR	9E-6		0.0077708	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
989	chr14	52961647	52961648	rs10129758	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q22.1	NR	rs10129758-?	NR	4E-6	(AA)	5.48	[4.52-6.44]	Illumina [905956]	N
989	chr14	52981663	52981664	rs117463339	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q22.1	TXNDC16	rs117463339-G	0.987572	5E-13	(5-bromotryptophan)	0.782	[0.57-0.99] unit increase	Illumina [13039987] (imputed)	N
989	chr14	52989227	52989228	rs745080	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	14q22.1	TXNDC16	rs745080-?	0.55	8E-7	(CP)	1.59	[1.32-1.92]	Illumina [NR]	N
989	chr14	53033147	53033148	rs10134584	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q22.1	NR	rs10134584-?	NR	7E-6	(AA)	5.23	[4.27-6.19]	Illumina [905956]	N
990	chr14	53115350	53115352	rs145600547	32572055	Sekula P	2020-06-22	Sci Rep	Urine 6-Bromotryptophan: Associations with Genetic Variants and Incident End-Stage Kidney Disease.	Urine 6-bromotryptophan levels in chronic kidney disease	4,863 European ancestry individuals	NA	14q22.1	ERO1A	rs145600547-A	0.03	3E-13		0.45	[0.33-0.57] unit decrease	NR [9281895] (imputed)	N
990	chr14	53151144	53151145	rs1570255	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.1		rs1570255-?	NR	1E-10		0.0210601	[0.014-0.028] unit increase	Affymetrix [20259828] (imputed)	N
990	chr14	53154349	53154350	rs3783449	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.1	ERO1A	rs3783449-G	0.899641	2E-11		0.0206861	[0.015-0.027] unit increase	NR [13737936] (imputed)	N
990	chr14	53154908	53154909	rs71422098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.1		rs71422098-?	NR	2E-10				NR [~ 8900000] (imputed)	N
990	chr14	53154908	53154909	rs71422098	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.1		rs71422098-?	NR	1E-10		0.021212	[0.015-0.028] unit increase	Affymetrix [20259828] (imputed)	N
990	chr14	53162048	53162049	rs78058068	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q22.1	NR	rs78058068-?	NR	1E-8				Illumina [7760689] (imputed)	N
990	chr14	53165077	53165078	rs10151414	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs10151414-C	0.4913	2E-9	(GNPNAT1)	0.01323	NR unit increase	Illumina [1671387] (imputed)	N
990	chr14	53168967	53168968	rs185126971	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		14q22.1	Intergenic	rs185126971-A	0.011	8E-6	(liability model)	0.37	[0.21-0.53] unit increase	NR [19725427] (imputed)	N
990	chr14	53197710	53197711	rs8004624	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs8004624-A	0.4895	9E-13	(GNPNAT1)	0.01524	NR unit decrease	Illumina [1671387] (imputed)	N
991	chr14	53218398	53218399	rs11625099	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs11625099-G	0.3693	4E-19	(GNPNAT1)	0.02002	NR unit decrease	Illumina [1671387] (imputed)	N
991	chr14	53265070	53265071	rs4898764	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	14q22.1	GNPNAT1	rs4898764-G	0.53	4E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
991	chr14	53276074	53276075	rs12589690	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNPNAT1	5,355 Icelandic ancestry individuals	NA	14q22.1		rs12589690-C	0.4014	5E-15		0.14591	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
991	chr14	53276074	53276075	rs12589690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q22.1	GNPNAT1	rs12589690-T	0.5959375	7E-11	(GNPNAT1, 13954_9_3)	0.1617632	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
991	chr14	53281882	53281883	rs4898765	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs4898765-T	0.4408	7E-19	(GNPNAT1)	0.01895	NR unit decrease	Illumina [1671387] (imputed)	N
991	chr14	53283564	53283565	rs2025631	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs2025631-A	0.4408	3E-14	(GNPNAT1)	0.01642	NR unit increase	Illumina [1671387] (imputed)	N
991	chr14	53288449	53288450	rs11624787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.1	NR	rs11624787-C	0.4634	1E-11	(GNPNAT1)	0.01509	NR unit increase	Illumina [1671387] (imputed)	N
991	chr14	53298852	53298853	rs7146179	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	14q22.1		rs7146179-?	NR	7E-11				Illumina [NR] (imputed)	N
991	chr14	53321272	53321273	rs62003514	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q22.1	FERMT2	rs62003514-C	0.8198	2E-12		0.6815	[0.49-0.87] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
991	chr14	53330719	53330720	rs745496705	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	14q22.1		rs745496705-AT	NR	6E-9		1.1424	NR	Affymetrix [7846216] (imputed)	N
992	chr14	53361874	53361875	rs12147852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q22.1		rs12147852-A	NR	4E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
992	chr14	53361874	53361875	rs12147852	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	14q22.1	NR	rs12147852-G		3E-15		0.13	[0.091-0.169] unit increase	NR [NR]	N
992	chr14	53361874	53361875	rs12147852	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	14q22.1	FERMT2	rs12147852-?	NR	2E-15		0.1211	[0.091-0.151] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
992	chr14	53366148	53366149	rs7161323	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q22.1	FERMT2	rs7161323-C		6E-11		0.275	unit decrease	Affymetrix [at least 2696785] (imputed)	N
992	chr14	53366148	53366149	rs7161323	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q22.1	FERMT2	rs7161323-C		2E-6		0.132	unit decrease	Affymetrix [at least 2696785] (imputed)	N
992	chr14	53366148	53366149	rs7161323	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q22.1	FERMT2	rs7161323-C		1E-8		0.147	unit decrease	Affymetrix [at least 2696785] (imputed)	N
992	chr14	53368231	53368232	rs12889169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	14q22.1		rs12889169-T	NR	3E-10		0.1182	[0.081-0.155] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
992	chr14	53368231	53368232	rs12889169	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	14q22.1		rs12889169-?	NR	4E-8		0.88059	[0.84-0.93]	NR [680312]	N
992	chr14	53372329	53372330	rs8008270	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	14q22.1	NR	rs8008270-G	NR	9E-9		1.11	NR	Affymetrix [at least 232408] (imputed)	N
992	chr14	53372329	53372330	rs8008270	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	14q22.1	NR	rs8008270-C	0.81	6E-16		1.09	[1.07-1.11]	Illumina [20370935] (imputed)	N
992	chr14	53372329	53372330	rs8008270	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	14q22.1	DDHD1, ERO1L, TXNDC16, FERMT2, GNPNAT1, GPR137C, PSMC6, STYX	rs8008270-G	0.82	2E-14		1.12	[1.08-1.16]	Illumina [~ 2600000] (imputed)	N
992	chr14	53373398	53373399	rs12887631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q22.1		rs12887631-?	NR	2E-17				NR [~ 8900000] (imputed)	N
992	chr14	53373741	53373741	rs397697481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q22.1		rs397697481-TA	NR	2E-10		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
992	chr14	53377539	53377540	rs9888615	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	14q22.1	FERMT2	rs9888615-T	0.29	4E-10		0.318	[0.22-0.42] unit decrease	Affymetrix [~ 9800000] (imputed)	N
992	chr14	53379924	53379925	rs4901308	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	14q22.1	FERMT2	rs4901308-T	0.19	2E-8		0.8	[0.51-1.09] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
992	chr14	53386441	53386442	rs79534246	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.1	FERMT2	rs79534246-A	0.996	5E-6	(AA)	0.17	unit increase	Illumina [NR] (imputed)	N
992	chr14	53386835	53386836	rs8009633	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	14q22.1	FERMT2	rs8009633-G	0.77	5E-16				Affymetrix, Illumina [8002429] (imputed)	N
992	chr14	53386835	53386836	rs8009633	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	14q22.1	FERMT2	rs8009633-G	0.768	7E-13		0.11	[0.081-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
992	chr14	53386835	53386836	rs8009633	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q22.1	FERMT2	rs8009633-G	0.7688	1E-13		0.1173	[0.085-0.15] unit increase	Affymetrix [~ 11900000] (imputed)	N
992	chr14	53387108	53387109	rs4901313	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	14q22.1	NR	rs4901313-G	0.812484485	1E-7		1.1266177	[1.08-1.18]	Affymetrix, Illumina [20400945] (imputed)	N
992	chr14	53387108	53387109	rs4901313	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q22.1	NR	rs4901313-G	NR	1E-19		1.083	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
992	chr14	53391679	53391680	rs17125924	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	14q22.1	NR	rs17125924-?	NR	6E-9				Affymetrix [7795605] (imputed)	N
992	chr14	53400628	53400629	rs17125944	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q22.1	FERMT2	rs17125944-C	0.092	8E-9		1.14	[1.09-1.19]	Illumina [7055881] (imputed)	N
992	chr14	53411390	53411391	rs7494379	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	14q22.1	FERMT2	rs7494379-G		5E-9	(Asian)	1.13	[NR]	Illumina [5245080] (imputed)	N
992	chr14	53411390	53411391	rs7494379	27064256	Khor CC	2016-04-04	Nat Genet	Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	5,612 East Asian ancestry cases, 12,451 East Asian ancestry controls, 337 Indian ancestry cases, 2,538 Indian ancestry controls, 576 European ancestry cases, 4,940 European ancestry controls	430 European ancestry cases, 3,133 European ancestry controls, 90 Nepalese ancestry cases, 205 Nepalese ancestry controls, 2,340 East Asian ancestry cases, 3,865 East Asian ancestry controls, 628 South Asian ancestry cases, 552 South Asian ancestry controls, 99 Latin American cases, 224 Latin American controls, 391 Saudi Arabian ancestry cases, 1,659 Saudi Arabian ancestry controls	14q22.1	FERMT2	rs7494379-G		3E-11		1.14	[NR]	Illumina [5245080] (imputed)	N
993	chr14	53480553	53480554	rs7150556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q22.1	NR	rs7150556-?	NR	8E-6		4.466	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
993	chr14	53494121	53494122	rs10139750	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	14q22.1	NR	rs10139750-C	0.345924	3E-8		0.04116785	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
993	chr14	53508590	53508591	rs78389413	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q22.1		rs78389413-?	NR	4E-8				Affymetrix [NR] (imputed)	N
993	chr14	53540248	53540249	rs1959351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs1959351-A	0.17086	4E-21				Affymetrix, Illumina [17210439] (imputed)	N
993	chr14	53577133	53577134	rs72688272	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q22.1		rs72688272-?	NR	4E-8				Affymetrix [NR] (imputed)	N
993	chr14	53582235	53582236	rs10140010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q22.1	DDHD1	rs10140010-A	0.832244	4E-12		0.020898815	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
993	chr14	53582919	53582920	rs10140668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q22.1	NR	rs10140668-T	0.83242	2E-19		0.022136	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
993	chr14	53589301	53589301	rs67808654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q22.1	DDHD1	rs67808654-GTT	0.817565	5E-11		0.019386778	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
993	chr14	53599023	53599024	rs11157951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q22.1		rs11157951-A	NR	1E-10		0.0199	[0.014-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
994	chr14	53613454	53613455	rs4901350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q22.1	NR	rs4901350-T	0.166762	3E-23		0.025644	[0.021-0.031] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
994	chr14	53619984	53619985	rs1959356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.1	NR	rs1959356-T	0.845882	3E-19				Affymetrix, Illumina [24588908] (imputed)	N
994	chr14	53627444	53627445	rs11157953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.1	RP11-547D23.1	rs11157953-G	0.833757	5E-18		0.026134774	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
995	chr14	53773524	53773525	rs7143361	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.1		rs7143361-?	NR	1E-19		0.0195628	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
995	chr14	53774624	53774625	rs4143691	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.1	LOC101927620	rs4143691-C	0.671926	9E-22		0.0189927	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
995	chr14	53774624	53774625	rs4143691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.1		rs4143691-?	NR	9E-23				NR [~ 8900000] (imputed)	N
995	chr14	53797382	53797383	rs75405126	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	14q22.1	AL163953.3	rs75405126-?	NR	3E-7	(Native Hawaiian)	14.1153	[8.74-19.5] unit increase	Illumina [31978362] (imputed)	N
995	chr14	53797382	53797383	rs75405126	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	14q22.1	AL163953.3	rs75405126-?	NR	2E-8		10.991	[7.15-14.83] unit increase	Illumina [31978362] (imputed)	N
995	chr14	53837484	53837485	rs12434047	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	14q22.1	intergenic	rs12434047-G	NR	3E-6		0.127	[0.074-0.180] unit decrease	Illumina [628922]	N
996	chr14	53914025	53914026	rs9323243	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q22.1	NR	rs9323243-?		9E-6				Illumina [4322238] (imputed)	N
996	chr14	53917807	53917808	rs10083313	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q22.1	NR	rs10083313-A	0.2688	1E-17				NR [9056863] (imputed)	N
996	chr14	53923170	53923171	rs61986118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q22.1	NR	rs61986118-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
996	chr14	53942787	53942788	rs17126556	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.1	NR	rs17126556-?	NR	6E-12	(CSF)			NR [9227495] (imputed)	N
996	chr14	53960219	53960220	rs12433690	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q22.1	NR	rs12433690-?		4E-9				NR [7428630] (imputed)	N
996	chr14	53964997	53964998	rs4901427	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q22.1		rs4901427-T	0.29	1E-39		13.16	z score increase	Affymetrix [9061022] (imputed)	N
996	chr14	53964997	53964998	rs4901427	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q22.1		rs4901427-T	0.29	1E-17		8.55	z score increase	Affymetrix [9061022] (imputed)	N
996	chr14	53970674	53970675	rs10130556	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	14q22.1	DDHD1, BMP4	rs10130556-G	0.41	7E-7	(EA)	0.013	[0.0071-0.0189] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
996	chr14	53970674	53970675	rs10130556	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	14q22.1	DDHD1, BMP4	rs10130556-G	0.41	5E-9		0.014	[0.010-0.018] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
996	chr14	53975569	53975570	rs1959830	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q22.1		rs1959830-T	0.29	4E-24		10.12	z score increase	Affymetrix [9061022] (imputed)	N
996	chr14	53975569	53975570	rs1959830	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q22.1	NR	rs1959830-T	0.3027	1E-17				NR [9056863] (imputed)	N
996	chr14	53975569	53975570	rs1959830	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	14q22.1		rs1959830-?	NR	1E-17				NR [9705931] (imputed)	N
996	chr14	53983232	53983233	rs1343920	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	14q22.1	DDHD1	rs1343920-A	0.432	2E-8		0.013	[0.0091-0.0169] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
996	chr14	53988049	53988050	rs2251069	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q22.1	LOC101927620, MIR5580	rs2251069-T	0.57	2E-14		0.0067	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
996	chr14	53988049	53988050	rs2251069	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	14q22.1	DDHD1	rs2251069-C	NR	6E-8	(EA)	0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
996	chr14	53988049	53988050	rs2251069	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	14q22.1	DDHD1	rs2251069-C	NR	1E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
996	chr14	53989446	53989447	rs2251171	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q22.1	DDHD1	rs2251171-G	0.6	8E-11		0.00571	[0.004-0.0074] unit increase	Affymetrix [at least 8002429] (imputed)	N
996	chr14	53989951	53989952	rs11623384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q22.1		rs11623384-?	NR	4E-8				NR [~ 8900000] (imputed)	N
997	chr14	54058909	54058910	rs17126672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.1		rs17126672-?	NR	9E-12				NR [~ 8900000] (imputed)	N
997	chr14	54072857	54072858	rs1380131	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	14q22.2	NR	rs1380131-A	0.1011	9E-6		2.087	[1.497-2.909]	Illumina [274400]	N
997	chr14	54072857	54072858	rs1380131	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	14q22.2	intergenic	rs1380131-C	0.07	9E-6		0.147	[NR] unit increase	Illumina [~ 300000]	N
997	chr14	54077801	54077802	rs12878658	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	14q22.2		rs12878658-A	0.169871095	5E-9				Illumina [7417619] (imputed)	N
997	chr14	54090076	54090077	rs10483623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.2		rs10483623-?	NR	1E-8				NR [~ 8900000] (imputed)	N
997	chr14	54107790	54107791	rs210381	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q22.2		rs210381-A	0.5652	2E-10		0.13663618	[0.092-0.181] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
997	chr14	54107790	54107791	rs210381	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q22.2		rs210381-A	0.5654	5E-19		0.13551074	[0.1-0.17] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
997	chr14	54107790	54107791	rs210381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q22.2		rs210381-?	NR	2E-17				NR [~ 8900000] (imputed)	N
997	chr14	54107790	54107791	rs210381	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q22.2	BMP4	rs210381-G	0.4268	4E-8		1.044	NR	Affymetrix [9154080] (imputed)	N
997	chr14	54107790	54107791	rs210381	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q22.2	AL163953.3	rs210381-A	0.5594	1E-17		0.1501	[0.12-0.18] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
997	chr14	54122400	54122401	rs210314	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q22.2	intergenic	rs210314-T	0.5558	4E-11		0.1278	[0.09-0.166] mmHg decrease	Affymetrix [NR] (imputed)	N
997	chr14	54125961	54125962	rs140613174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q22.2		rs140613174-?	NR	8E-13				NR [~ 8900000] (imputed)	N
997	chr14	54125961	54125962	rs140613174	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q22.2	NR	rs140613174-T	0.0350792	1E-12		0.0607368	[0.044-0.077] unit decrease	NR [19129689] (imputed)	N
998	chr14	54136007	54136008	rs210368	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	14q22.2	LOC101927620, MIR5580	rs210368-C	NR	4E-7		0.127	[0.078-0.176] unit decrease	Illumina [27700000] (imputed)	N
998	chr14	54155962	54155963	rs210374	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.2	MIR5580	rs210374-A	0.265386	8E-12		0.0144096	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
998	chr14	54155962	54155963	rs210374	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs210374-?	NR	2E-10		0.0144396	[0.0098-0.0191] unit decrease	Affymetrix [20259828] (imputed)	N
998	chr14	54161090	54161096	rs57620710	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	14q22.2	LOC101927620, MIR5580	rs57620710-GGGAGGT	NR	2E-7		0.084	[0.053-0.115] unit decrease	Illumina [27700000] (imputed)	N
998	chr14	54167471	54167472	rs210359	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	14q22.2	BMP4	rs210359-A		8E-8	(AA)			Illumina [NR]	N
998	chr14	54176739	54176739	rs138851738	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	14q22.2	NR	rs138851738-?		2E-6		0.6	[0.48-0.74]	Illumina [539473] (imputed)	N
998	chr14	54180962	54180963	rs112021184	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.2	NR	rs112021184-C	0.02962	3E-8	(USP5)	0.09383	NR unit increase	Illumina [1671387] (imputed)	N
998	chr14	54226687	54226688	rs12184995	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (Non-endometrioid histology)	1,230 European ancestry cases, 35,447 European ancestry controls	NA	14q22.2	CDKN3	rs12184995-A	0.17020400000000002	7E-7		1.31	[1.18-1.46]	Affymetrix, Illumina [~ 11700000] (imputed)	N
998	chr14	54237439	54237440	rs17126879	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.2	NR	rs17126879-?	NR	1E-36				Affymetrix [NR]	N
998	chr14	54246352	54246353	rs12589674	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	14q22.2	DDHD1, MIR5580	rs12589674-?	NR	2E-6				Illumina [491617]	N
998	chr14	54255509	54255510	rs72678242	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	14q22.2	DDHD1, BMP4	rs72678242-?	NR	6E-32		1.2738854	[1.22-1.32]	Illumina [13537761] (imputed)	N
999	chr14	54263850	54263851	rs8009420	26980576	Kim K	2016-03-15	J Rheumatol	Response to Intravenous Cyclophosphamide Treatment for Lupus Nephritis Associated with Polymorphisms in the FCGR2B-FCRLA Locus.	Response to cyclophosphamide in systemic lupus erythematosus with lupus nephritis	93 Korean ancestry responder cases, 16 Korean ancestry non-responder cases	NA	14q22.2	DDHD1, MIR5580	rs8009420-?	NR	2E-6				Illumina [491617]	N
999	chr14	54271267	54271268	rs117609474	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	14q22.2	RPS3AP46, BMP4	rs117609474-G	0.01	4E-7		0.98	[0.61-1.35] unit increase	Illumina [7797256] (imputed)	N
999	chr14	54289366	54289367	rs2358373	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	14q22.2	AL162759.1	rs2358373-T	0.8199	7E-6		0.0905	[0.051-0.13] unit increase	Affymetrix, Illumina [NR] (imputed)	N
999	chr14	54290829	54290830	rs12431733	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	14q22.2	BMP4	rs12431733-T	0.48	3E-6		1.13	[NR]	Illumina [463185]	N
999	chr14	54315228	54315229	rs944370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q22.2	NR	rs944370-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
999	chr14	54315228	54315229	rs944370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q22.2	NR	rs944370-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
999	chr14	54316606	54316607	rs7148896	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q22.2	NR	rs7148896-A	0.2974	9E-9	(Lingual)	10.950577	[7.21-14.69] unit increase	Affymetrix, Illumina [NR]	N
999	chr14	54339492	54339493	rs7160860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q22.2	AL162759.1	rs7160860-T	NR	5E-11		0.026994	[0.019-0.035] unit decrease	Affymetrix [321114] (imputed)	N
999	chr14	54339492	54339493	rs7160860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q22.2	AL162759.1	rs7160860-T	NR	3E-8		0.0229575	[0.015-0.031] unit decrease	Affymetrix [321169] (imputed)	N
999	chr14	54339492	54339493	rs7160860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.2		rs7160860-?	NR	8E-12				NR [~ 8900000] (imputed)	N
999	chr14	54343731	54343732	rs11846278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q22.2		rs11846278-?	NR	1E-9				NR [~ 8900000] (imputed)	N
999	chr14	54346009	54346010	rs74053129	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q22.2	MIR5580	rs74053129-A	0.0959	2E-22		0.0392	[0.031-0.047] unit increase	Affymetrix [19819130] (imputed)	N
999	chr14	54349975	54349976	rs11625034	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	14q22.2	BMP4	rs11625034-A	0.32	6E-6		0.07	[0.031-0.109] unit increase	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
999	chr14	54350150	54350151	rs72678285	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	14q22.2	NR	rs72678285-T		2E-6		0.1092	[0.064-0.155] SD units decrease	NR [10700000] (imputed)	N
999	chr14	54351896	54351897	rs731901	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs731901-A	0.141918	2E-8		0.0779924	[0.052-0.104] increase	Affymetrix [11014269] (imputed)	N
999	chr14	54352960	54352961	rs74053152	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q22.2	NR	rs74053152-G		1E-8		0.11	[0.071-0.149] unit increase	NR [NR]	N
999	chr14	54361222	54361223	rs4898815	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q22.2	NR	rs4898815-G	0.180867	1E-8		0.0230026	[0.015-0.031] unit increase	NR [19129689] (imputed)	N
1000	chr14	54410598	54410599	rs7154598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q22.2		rs7154598-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1000	chr14	54410918	54410919	rs4444235	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		14q22.2	DDHD1, MIR5580	rs4444235-T	0.54	4E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1000	chr14	54410918	54410919	rs4444235	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		14q22.2	DDHD1, MIR5580	rs4444235-T	0.54	2E-7	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1000	chr14	54410918	54410919	rs4444235	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	14q22.2	NR	rs4444235-C	0.493	1E-9	(EA)	1.0752687	[1.05-1.1]	Affymetrix, Illumina [12931465] (imputed)	N
1000	chr14	54410918	54410919	rs4444235	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	14q22.2	BMP4	rs4444235-C	0.49	5E-8		1.0869565	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1000	chr14	54410918	54410919	rs4444235	19011631	Houlston RS	2008-11-16	Nat Genet	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	14q22.2	BMP4	rs4444235-C	0.46	8E-10		1.11	[1.08-1.15]	Illumina [up to 548586]	N
1000	chr14	54413609	54413610	rs2358432	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	14q22.2	NR	rs2358432-?	NR	6E-7		0.134854	[0.082-0.188] unit increase	NR [13958389] (imputed)	N
1000	chr14	54414199	54414199	rs397721703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	14q22.2		rs397721703-AT	NR	7E-9		0.0631	[0.042-0.084] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1000	chr14	54414737	54414738	rs12893484	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q22.2	BMP4	rs12893484-?		1E-8				NR [7428630] (imputed)	N
1000	chr14	54417521	54417522	rs17563	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q22.2		rs17563-A	0.45	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
1000	chr14	54417521	54417522	rs17563	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q22.2	NR	rs17563-A	0.424	2E-10				NR [9056863] (imputed)	N
1000	chr14	54417521	54417522	rs17563	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.2	BMP4	rs17563-A	0.42611	2E-42		0.0343817	[0.029-0.039] unit increase	NR [13737936] (imputed)	N
1000	chr14	54417521	54417522	rs17563	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		14q22.2	BMP4	rs17563-G	NR	9E-17		0.239	[0.18-0.3] unit decrease	Illumina [2446724] (imputed)	N
1000	chr14	54418410	54418411	rs2071047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q22.2		rs2071047-A	NR	6E-12		0.0112	[0.0081-0.0143] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1000	chr14	54418410	54418411	rs2071047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	14q22.2		rs2071047-A	NR	8E-9		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1000	chr14	54418410	54418411	rs2071047	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q22.2	BMP4	rs2071047-A	0.4065	2E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1000	chr14	54418410	54418411	rs2071047	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q22.2	NR	rs2071047-A	0.407024	4E-8		0.0174507	[0.011-0.024] unit decrease	NR [19129689] (imputed)	N
1000	chr14	54418410	54418411	rs2071047	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	14q22.2	BMP4	rs2071047-A	0.41	3E-6	(EA)	0.0038	[0.0022-0.0054] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	14q22.2		rs35107139-C	NR	3E-16		0.0794	[0.06-0.098] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	14q22.2	NR	rs35107139-C	NR	1E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [> 10000000] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	14q22.2	BMP4	rs35107139-A	0.5962	1E-13		0.0196	[0.014-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q22.2	BMP4	rs35107139-A	0.5962	3E-36		0.0315	[0.027-0.036] unit increase	Affymetrix [19819130] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q22.2		rs35107139-?	NR	1E-41				NR [~ 8900000] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.2		rs35107139-?	NR	9E-197				NR [~ 8900000] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	14q22.2	BMP4	rs35107139-C	0.4235	2E-22		1.09	[1.07-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs35107139-?	NR	9E-196		0.0635749	[0.059-0.068] unit decrease	Affymetrix [20259828] (imputed)	N
1000	chr14	54419105	54419106	rs35107139	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	14q22.2	BMP4	rs35107139-C	0.4	2E-6		1.1	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1000	chr14	54419109	54419110	rs10130587	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs10130587-?	NR	7E-194		0.0634308	[0.059-0.068] unit decrease	Affymetrix [20259828] (imputed)	N
1000	chr14	54419109	54419110	rs10130587	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs10130587-G	0.595716	4E-28	(men)	0.0605856	[0.05-0.071] unit decrease	NR [17166351] (imputed)	N
1000	chr14	54419109	54419110	rs10130587	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs10130587-G	0.594353	3E-72		0.0629033	[0.056-0.07] unit decrease	NR [17166351] (imputed)	N
1000	chr14	54419109	54419110	rs10130587	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs10130587-G	0.593163	5E-39	(women)	0.0633921	[0.054-0.073] unit decrease	NR [17166351] (imputed)	N
1000	chr14	54419551	54419552	rs59035991	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.2	BMP4	rs59035991-T	0.952345	5E-17		0.038867	[0.03-0.048] unit decrease	NR [13737936] (imputed)	N
1000	chr14	54420308	54420309	rs2761882	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	14q22.2		rs2761882-C	0.502971	2E-8		0.0490969	[0.031-0.067] increase	Affymetrix [11014269] (imputed)	N
1000	chr14	54420308	54420309	rs2761882	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q22.2	NR	rs2761882-C		1E-26		0.12	[0.1-0.14] unit increase	NR [NR]	N
1000	chr14	54420308	54420309	rs2761882	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q22.2	BMP4	rs2761882-T	0.5	6E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1000	chr14	54420647	54420647	rs71446481	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs71446481-?	NR	8E-160		0.0550246	[0.051-0.059] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr14	54420647	54420647	rs71446481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs71446481-A	0.555345	3E-35	(women)	0.0576564	[0.048-0.067] unit increase	NR [17166351] (imputed)	N
1000	chr14	54420647	54420647	rs71446481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs71446481-A	0.553909	5E-58		0.0531113	[0.046-0.06] unit increase	NR [17166351] (imputed)	N
1000	chr14	54420647	54420647	rs71446481	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q22.2	BMP4	rs71446481-A	0.552263	9E-20	(men)	0.0473568	[0.037-0.057] unit increase	NR [17166351] (imputed)	N
1000	chr14	54421051	54421052	rs2761884	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.2	BMP4	rs2761884-G	0.547003	5E-29		0.0280415	[0.023-0.033] unit increase	NR [13737936] (imputed)	N
1000	chr14	54421916	54421917	rs2855530	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		BMP4	rs2855530-C	NR	7E-17		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1000	chr14	54421916	54421917	rs2855530	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA		BMP4, CDKN3	rs2855530-?		2E-59				Affymetrix, Illumina [NR] (imputed)	N
1000	chr14	54421916	54421917	rs2855530	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs2855530-?	NR	5E-8	(right lateral orbitofrontal)			NR [9227495] (imputed)	N
1000	chr14	54421916	54421917	rs2855530	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA		BMP4	rs2855530-C	0.5067	1E-17		8.575	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1000	chr14	54422398	54422399	rs2738265	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q22.2	BMP4	rs2738265-C	0.46	3E-8		0.0048	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1000	chr14	54422398	54422399	rs2738265	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q22.2	BMP4	rs2738265-C	0.46	9E-6		0.0039	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1000	chr14	54422398	54422399	rs2738265	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q22.2	NR	rs2738265-C	0.4351	1E-13		0.0525	[0.039-0.066] unit increase	Illumina [~ 10600000] (imputed)	N
1000	chr14	54431499	54431500	rs8014071	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	14q22.2	NR	rs8014071-G	NR	3E-9		1.044		Affymetrix [9869154] (imputed)	N
1000	chr14	54431499	54431500	rs8014071	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q22.2	NR	rs8014071-?	NR	1E-7		0.11172	[0.07-0.153] unit increase	NR [13958389] (imputed)	N
1000	chr14	54435048	54435049	rs7153662	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs7153662-?	NR	2E-110		0.0476138	[0.043-0.052] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr14	54437831	54437832	rs56312905	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs56312905-?	NR	2E-41		0.0371617	[0.032-0.043] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr14	54444084	54444084	rs531709987	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs531709987-?	NR	3E-17		0.0265529	[0.02-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr14	54445156	54445157	rs4901473	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	14q22.2	BMP4	rs4901473-G	0.378	5E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1000	chr14	54451108	54451109	rs8007821	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.2	NR	rs8007821-?	NR	8E-7				Affymetrix [NR]	N
1000	chr14	54457230	54457231	rs7160450	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	14q22.2	BMP4	rs7160450-T	0.3778	4E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1000	chr14	54489088	54489089	rs61984763	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs61984763-?	NR	3E-12		0.0167886	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr14	54515234	54515235	rs116848211	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q22.2	BMP4	rs116848211-C	0.95438	3E-11		0.030066	[0.021-0.039] unit decrease	NR [13737936] (imputed)	N
1001	chr14	54552427	54552428	rs2181346	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	14q22.2	BMP4, CDKN3	rs2181346-?	NR	5E-17		1.079	[1.060-1.098]	Illumina [13762925] (imputed)	N
1001	chr14	54554233	54554234	rs1570405	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	14q22.2	NR	rs1570405-G	0.31	1E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [> 10000000] (imputed)	N
1001	chr14	54562487	54562488	rs55694272	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.2	NR	rs55694272-?	NR	4E-8	(right lateral orbitofrontal)			NR [9227495] (imputed)	N
1001	chr14	54603800	54603801	rs12878451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q22.2		rs12878451-C	0.619981	3E-13		0.016874501	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1001	chr14	54613797	54613798	rs12884087	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	14q22.2	NR	rs12884087-?	NR	5E-7		0.146608	[0.089-0.204] unit increase	NR [13958389] (imputed)	N
1001	chr14	54634221	54634222	rs811142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.2		rs811142-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1001	chr14	54638400	54638401	rs10483628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q22.2	CDKN3	rs10483628-?	NR	9E-6	(phosphoenolpyruvic acid)	0.4057293	[0.23-0.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1001	chr14	54652478	54652479	rs1953743	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	14q22.2	ATP5C2	rs1953743-?	NR	2E-6	(Comparatively younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1002	chr14	54670325	54670326	rs371541208	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q22.2	NR	rs371541208-A		5E-23		0.12	[0.1-0.14] unit increase	NR [NR]	N
1002	chr14	54672732	54672733	rs547932535	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	14q22.2	BMP4, CDKN3	rs547932535-?	0.302	3E-8		1.1796292	[1.11-1.25]	Affymetrix [NR] (imputed)	N
1002	chr14	54704458	54704459	rs1187437	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	14q22.2	BMP4, CDKN3, CGRRF1, CNIH1, GMFB, MIR5580	rs1187437-?	NR	4E-7				Illumina [9143600] (imputed)	N
1002	chr14	54710349	54710350	rs368806373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q22.2		rs368806373-T	0.29	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
1002	chr14	54710349	54710350	rs368806373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q22.2	NR	rs368806373-T	0.2997	1E-11				NR [9056863] (imputed)	N
1002	chr14	54723922	54723923	rs2143963	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	14q22.2	CDKN3	rs2143963-C		9E-6		0.07	[0.04-0.10] unit increase	Affymetrix [~ 2500000] (imputed)	N
1002	chr14	54724053	54724054	rs2358483	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q22.2	NR	rs2358483-T	0.295	4E-16	(Lateral Orbitofrontal)	12.05522	[9.15-14.96] unit decrease	Affymetrix, Illumina [NR]	N
1002	chr14	54734188	54734189	rs7143516	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q22.2	NR	rs7143516-T	0.2767	4E-8		0.0824	[0.053-0.112] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1002	chr14	54734188	54734189	rs7143516	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q22.2	NR	rs7143516-T	0.2639	9E-9	(EA)	0.0959	[0.063-0.129] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1002	chr14	54754177	54754178	rs10483631	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q22.2		rs10483631-?	NR	5E-11				NR [9705931] (imputed)	N
1002	chr14	54769838	54769839	rs6572946	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q22.2	CDKN3	rs6572946-?		2E-10	(Lateral orbitofrontal)			Affymetrix, Illumina [NR] (imputed)	N
1002	chr14	54777744	54777745	rs7147119	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q22.2	NR	rs7147119-A	0.359	6E-14	(Pars Orbitalis)	3.0825503	[2.28-3.89] unit decrease	Affymetrix, Illumina [NR]	N
1002	chr14	54779522	54779522	rs10637890	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q22.2	intergenic	rs10637890-T	0.379	4E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix [18391927] (imputed)	N
1002	chr14	54781092	54781093	rs17646402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q22.2		rs17646402-T	0.349008	5E-12		0.016106132	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr14	54781092	54781093	rs17646402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q22.2		rs17646402-T	0.349014	2E-10		0.014896686	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr14	54835545	54835546	rs4901508	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q22.2		rs4901508-A	0.44	4E-32		11.8	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr14	54835999	54836000	rs4901509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q22.2		rs4901509-G	0.44	5E-12		6.9	z score increase	Affymetrix [9061022] (imputed)	N
1003	chr14	54835999	54836000	rs4901509	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q22.2	NR	rs4901509-G	0.4272	4E-10				NR [9056863] (imputed)	N
1003	chr14	54849018	54849019	rs7156028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.2		rs7156028-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1003	chr14	54851223	54851224	rs8019495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q22.2		rs8019495-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1003	chr14	54857285	54857286	rs4293296	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	14q22.2	CDKN3	rs4293296-?	0.29	3E-6	(quetiapine)			Affymetrix [492900]	N
1003	chr14	54866955	54866955	rs11281426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q22.2	NR	rs11281426-I	0.701296	3E-11		0.015079	[0.011-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1003	chr14	54866959	54866964	rs796953522	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q22.2		rs796953522-?	NR	2E-10		0.0137551	[0.0094-0.0181] unit increase	Affymetrix [20259828] (imputed)	N
1003	chr14	54876183	54876184	rs4251631	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	14q22.2	GMFB, BMP4, CGRRF1, CDKN3, CNIH	rs4251631-?	NR	2E-7	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1003	chr14	54876183	54876184	rs4251631	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	14q22.2	GMFB, BMP4, CGRRF1, CDKN3, CNIH	rs4251631-?	NR	2E-6				Affymetrix, Illumina [~ 1400000] (imputed)	N
1004	chr14	54974460	54974461	rs189580225	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	14q22.2	NR	rs189580225-T		2E-7		0.8096	[0.51-1.11] SD units decrease	NR [10700000] (imputed)	N
1004	chr14	55005749	55005750	rs151121230	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	14q22.2	NR	rs151121230-A	0.02362	4E-6		0.4661	[0.27-0.66] unit increase	Illumina [34985077] (imputed)	N
1005	chr14	55086403	55086404	rs189523270	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	14q22.2	NR	rs189523270-C		8E-6		0.3777	[0.21-0.54] SD units increase	NR [10700000] (imputed)	N
1005	chr14	55090816	55090817	rs2358884	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	14q22.2	NR	rs2358884-C	NR	9E-6		0.7086	NR	Illumina [at least 560000] (imputed)	N
1005	chr14	55122917	55122918	rs17127713	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	SAMD4A	rs17127713-G	0.018	3E-6	(SBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
1005	chr14	55167157	55167158	rs4901530	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q22.2	SAMD4A, GCH1, CGRRF1, MIR4308	rs4901530-G	NR	2E-6	(sleep onset irregularity, weekdays)	0.05168	[0.03-0.073] unit increase	Affymetrix [7141204] (imputed)	N
1005	chr14	55172428	55172429	rs8012145	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q22.2	SAMD4A	rs8012145-T	0.7325	3E-9		0.02463193	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1005	chr14	55176343	55176344	rs17657012	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	14q22.2	NR	rs17657012-?		9E-6	(AA)			Illumina [up to 524000]	N
1005	chr14	55180152	55180153	rs11624106	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	14q22.2	NR	rs11624106-?	NR	4E-14		0.03584	[0.027-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1006	chr14	55188148	55188149	rs11848381	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	14q22.2	RBM23, PRMT5, HAUS4, C14orf93, SAMD4A	rs11848381-?		5E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
1006	chr14	55195203	55195204	rs17127816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q22.2		rs17127816-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1006	chr14	55200533	55200534	rs4901536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q22.2	NR	rs4901536-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1006	chr14	55200533	55200534	rs4901536	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q22.2		rs4901536-?	NR	9E-6	(MLM)	0.1919267	[0.11-0.28] unit increase	Illumina [~ 9000000] (imputed)	N
1006	chr14	55200533	55200534	rs4901536	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	14q22.2		rs4901536-?	NR	1E-6	(MLM)	0.2108473	[0.13-0.3] unit increase	Illumina [~ 9000000] (imputed)	N
1006	chr14	55227151	55227152	rs149416017	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar percentage of high attenuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	3,013 European ancestry individuals	14q22.2	SAMD4A	rs149416017-T	0.011	3E-8	(AA)	0.411	[0.27-0.56] unit increase	Affymetrix [at least 897981] (imputed)	N
1006	chr14	55227199	55227200	rs201029932	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	14q22.2		rs201029932-?	NR	9E-13		0.0797857	[0.057-0.103] unit decrease	NR [9800000] (imputed)	N
1006	chr14	55233523	55233524	rs7147275	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	14q22.2	NR	rs7147275-?	NR	6E-9		0.03222	[0.021-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1006	chr14	55235281	55235282	rs4901541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q22.2		rs4901541-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1006	chr14	55238308	55238309	rs7155922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q22.2		rs7155922-A	NR	3E-18		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1006	chr14	55238308	55238309	rs7155922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q22.2	SAMD4A	rs7155922-G	NR	3E-9		0.0186912	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1006	chr14	55238308	55238309	rs7155922	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q22.2	SAMD4A	rs7155922-G	0.42	4E-16		8.14	z-score increase	Affymetrix [4314223] (imputed)	N
1006	chr14	55238308	55238309	rs7155922	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q22.2	NR	rs7155922-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1006	chr14	55242482	55242483	rs2181048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q22.2	NR	rs2181048-A	NR	2E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr14	55255672	55255673	rs11431	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	14q22.2	SAMD4A	rs11431-?	NR	5E-23		0.04164	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1006	chr14	55260665	55260666	rs6572975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q22.2		rs6572975-A	NR	1E-23		0.0129	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1006	chr14	55260665	55260666	rs6572975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q22.2		rs6572975-A	0.542058	6E-10		0.0126625	[0.0087-0.0167] unit increase	Illumina [13479295] (imputed)	N
1006	chr14	55260665	55260666	rs6572975	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q22.2	SAMD4A	rs6572975-?	NR	1E-13		0.021448465	[0.016-0.027] unit increase	Illumina [27896057] (imputed)	N
1006	chr14	55260784	55260785	rs7150628	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	14q22.2	SAMD4A	rs7150628-C	0.431	4E-6		0.1005	[0.058-0.143] kg increase	Affymetrix [at least 17000000] (imputed)	N
1006	chr14	55262779	55262780	rs12586289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.2		rs12586289-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1006	chr14	55276390	55276391	rs11158024	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	14q22.2	NR	rs11158024-?		8E-6		1.53	[1.27-1.85]	Illumina [539473] (imputed)	N
1006	chr14	55280980	55280981	rs7161374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	14q22.2		rs7161374-G	0.420864	2E-10		0.0260814	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1006	chr14	55281359	55281360	rs7161654	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	14q22.2	SAMD4A	rs7161654-T	0.7072	4E-6		0.0078	[0.0045-0.0111] unit increase	Affymetrix [~ 7740000] (imputed)	N
1006	chr14	55285587	55285588	rs7144602	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q22.2	SAMD4A	rs7144602-T	0.6451	3E-9		0.1094	[0.073-0.145] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1007	chr14	55336276	55336277	rs7141433	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q22.2	GCH1	rs7141433-C	0.884099	5E-15	(3-methoxytyramine sulfate)	0.272	[0.2-0.34] unit increase	Illumina [13039987] (imputed)	N
1007	chr14	55336276	55336277	rs7141433	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	14q22.2	GCH1	rs7141433-C	0.884099	5E-15	(3-methoxytyramine sulfate)	0.272	[0.2-0.34] unit increase	Illumina [13039987] (imputed)	N
1007	chr14	55337938	55337939	rs4363781	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	14q22.2		rs4363781-A	0.78	4E-8		0.0718	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1007	chr14	55348117	55348118	rs3783637	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	GCH1	rs3783637-A	0.121	6E-8	(Urinary free dopamine: creatinine)	0.05	[NR] unit increase	Illumina [899892]	N
1007	chr14	55348117	55348118	rs3783637	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.2	GCH1	rs3783637-A	0.121	1E-6	(Urinary free dopamine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1007	chr14	55348117	55348118	rs3783637	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q22.2	GCH1	rs3783637-C	0.74	2E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [1948139]	N
1007	chr14	55348868	55348869	rs11158026	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	14q22.2	GCH1	rs11158026-T		1E-10		0.0993	[0.069-0.129] unit decrease	Illumina [NR]	N
1007	chr14	55348868	55348869	rs11158026	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	14q22.2	GCH1	rs11158026-T	0.3245	2E-16		0.0842	[0.064-0.104] unit decrease	NR [7784415] (imputed)	N
1007	chr14	55348868	55348869	rs11158026	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	14q22.2	GCH1	rs11158026-C	0.669	4E-16		1.098901	[1.08-1.12]	Illumina [11933700] (imputed)	N
1007	chr14	55348868	55348869	rs11158026	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	14q22.2	GCH1	rs11158026-?	NR	9E-15		1.1454753	[1.11-1.18]	Illumina [12438219] (imputed)	N
1007	chr14	55348868	55348869	rs11158026	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	14q22.2	GCH1	rs11158026-C	0.665	6E-11		1.11	[1.08-1.14]	Illumina [7893274] (imputed)	N
1007	chr14	55351184	55351185	rs8010461	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q22.2	GCH1	rs8010461-T	0.837932	7E-48	(dopamine 3-O-sulfate)	0.439	[0.38-0.5] unit increase	Illumina [13039987] (imputed)	N
1007	chr14	55352862	55352863	rs10136545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q22.2	Intergenic	rs10136545-T	0.3214	2E-9	(MTAG)	0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1007	chr14	55357820	55357820	rs10645822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q22.2	NR	rs10645822-I	0.151417	2E-16		0.023272	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1007	chr14	55363320	55363321	rs10131633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q22.2		rs10131633-A	NR	3E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1007	chr14	55373669	55373670	rs2878172	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q22.2	GCH1, WDHD1	rs2878172-G	0.43069999999999997	7E-9		1.0215285		Affymetrix [11880941] (imputed)	N
1007	chr14	55384003	55384004	rs11628304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.2	NR	rs11628304-A	0.318824	3E-15				Affymetrix, Illumina [20825802] (imputed)	N
1007	chr14	55384339	55384340	rs1107960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q22.2		rs1107960-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1007	chr14	55384339	55384340	rs1107960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q22.2	Intergenic	rs1107960-A	0.3255	1E-8	(MTAG)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1007	chr14	55411743	55411744	rs17253619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	14q22.2		rs17253619-T	0.88124	4E-26		0.0673651	[0.055-0.08] unit decrease	NR [11722792] (imputed)	N
1007	chr14	55417215	55417216	rs6572992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.2	NR	rs6572992-G	0.326147	3E-18				Affymetrix, Illumina [24246363] (imputed)	N
1007	chr14	55439757	55439759	rs3074190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q22.2	WDHD1	rs3074190-T	0.33631	3E-12		0.016586592	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr14	55443601	55443602	rs878944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q22.2	WDHD1	rs878944-G	0.213946	1E-17		0.023164382	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr14	55459570	55459571	rs72715573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q22.2		rs72715573-T	NR	4E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1008	chr14	55462074	55462099	rs552414155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q22.2	NR	rs552414155-I	0.334517	3E-19		0.018861	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1008	chr14	55462099	55462099	rs34670443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q22.2	WDHD1	rs34670443-CTTCT	0.33468	3E-18		0.0199727	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr14	55483785	55483786	rs28489712	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	14q22.3	WDHD1	rs28489712-?		3E-6	(EA)	31.7	[NR]	Illumina [936149]	N
1008	chr14	55492664	55492665	rs146745713	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	14q22.3		rs146745713-C	0.98739	4E-6		0.0322383	[0.0081-0.0564] unit decrease	Illumina [7666802] (imputed)	N
1008	chr14	55530119	55530120	rs3742564	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	14q22.3		rs3742564-T	0.61	1E-115		0.1885	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1008	chr14	55552499	55552500	rs8012156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q22.3		rs8012156-T	0.418131	8E-11		0.014606688	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr14	55555367	55555368	rs67652508	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q22.3	MAPK1IP1L	rs67652508-?	NR	3E-8		0.014017323	[0.0091-0.019] unit decrease	NR [7306098]	N
1008	chr14	55557283	55557284	rs8019978	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	14q22.3	MAPK1IP1L, LGALS3	rs8019978-?	NR	9E-6		2.9411764	[1.79-5]	Illumina [1057565]	N
1009	chr14	55574792	55574793	rs28429419	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	14q22.3		rs28429419-T	NR	5E-6		0.5576	unit increase	Illumina [NR] (imputed)	N
1009	chr14	55582000	55582001	rs112796738	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3	5,360 Icelandic ancestry individuals	NA	14q22.3		rs112796738-A	0.08893	8E-84		0.606932	[0.55-0.67] unit decrease	Illumina [7506463] (imputed)	N
1009	chr14	55595259	55595259	rs750614951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	14q22.3		rs750614951-ATAAGGACCCTGC	0.580584	2E-9		0.0252368	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1009	chr14	55595259	55595259	rs750614951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	14q22.3		rs750614951-ATAAGGACCCTGC	0.580584	2E-8		0.0236402	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1009	chr14	55595259	55595259	rs750614951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	14q22.3		rs750614951-ATAAGGACCCTGC	0.580584	3E-8		0.0232869	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1009	chr14	55600938	55600939	rs76426991	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q22.3	LGALS3	rs76426991-G	0.91203125	3E-45	(LGALS3, 3066_12_1)	0.60643095	[0.52-0.69] unit increase	Illumina [> 1000000] (imputed)	N
1009	chr14	55610241	55610242	rs6573005	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Galectin 3 plasma levels	400 French ancestry individuals	NA	14q22.3		rs6573005-C	NR	1E-8		0.201	[0.14-0.27] ng/mL decrease	Illumina [5201092] (imputed)	N
1009	chr14	55614635	55614636	rs2274273	23056639	de Boer RA	2012-10-09	PLoS One	A genome-wide association study of circulating galectin-3.	Protein biomarker	3,776 European ancestry individuals	3,516 individuals	14q22.3	LGALS3, DLGAP5	rs2274273-A	0.41	2E-188	(Galectin-3)	0.185	[0.17-0.20] unit decrease	Illumina [2269099] (imputed)	N
1009	chr14	55636594	55636595	rs6650508	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	14q22.3		rs6650508-A	0.9	1E-173		0.5208	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1009	chr14	55660347	55660347	rs35710320	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	14q22.3	NR	rs35710320-?	NR	9E-10	(Galectin-3)	0.532993	[0.36-0.7] unit decrease	Illumina [11901634] (imputed)	N
1009	chr14	55664888	55664889	rs80226907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q22.3	RP11-698F20.3	rs80226907-C	0.0836	1E-36		0.08284297	[0.07-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1009	chr14	55668504	55668505	rs79485449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.3	RP11-698F20.3	rs79485449-C	0.083742	2E-73		0.07524751	[0.067-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr14	55708805	55708806	rs75068943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.3	NR	rs75068943-A	0.917611	2E-121				Affymetrix, Illumina [17210439] (imputed)	N
1010	chr14	55721862	55721863	rs79860430	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy	128 European ancestry cases, 2,501 controls	NA	14q22.3	ATG14	rs79860430-?	NR	8E-6		2.59	[1.75-3.83]	Illumina [654642] (imputed)	N
1010	chr14	55730403	55730404	rs10140801	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	14q22.3		rs10140801-T	0.42	8E-6		2.1	[1.51-2.91]	Illumina [9175654] (imputed)	N
1010	chr14	55731103	55731104	rs10715134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q22.3	RP11-665C16.6	rs10715134-C	0.433063	5E-23		0.022105532	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr14	55733657	55733658	rs10150699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q22.3		rs10150699-C	NR	1E-19		0.0149	[0.012-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1010	chr14	55735111	55735112	rs8011288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q22.3		rs8011288-T	NR	5E-18		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1010	chr14	55735111	55735112	rs8011288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.3	NR	rs8011288-C	0.564611	2E-11				Affymetrix, Illumina [22063850] (imputed)	N
1010	chr14	55735111	55735112	rs8011288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q22.3	NR	rs8011288-C	0.569021	9E-13		0.013628	[0.0099-0.0174] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1010	chr14	55735111	55735112	rs8011288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.3	NR	rs8011288-T	0.438831	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1010	chr14	55735111	55735112	rs8011288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q22.3		rs8011288-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1010	chr14	55744809	55744810	rs10146637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q22.3		rs10146637-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1010	chr14	55767068	55767069	rs8022225	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	14q22.3	FBXO34	rs8022225-A	0.5556	2E-8		0.0177	[0.012-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1010	chr14	55767068	55767069	rs8022225	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	14q22.3	FBXO34	rs8022225-A	0.5664	2E-6		0.018627	[0.011-0.026] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1010	chr14	55768154	55768154	rs536199747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q22.3	NR	rs536199747-I	0.105129	2E-13		0.02491	[0.018-0.032] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1010	chr14	55784736	55784737	rs2341534	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	14q22.3	NR	rs2341534-?	NR	3E-6				Illumina [7427422] (imputed)	N
1010	chr14	55787658	55787659	rs77021467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q22.3	FBXO34	rs77021467-A	0.082444	2E-11		0.027021736	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr14	55787658	55787659	rs77021467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q22.3	FBXO34	rs77021467-A	0.082432	2E-9		0.024166554	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr14	55801686	55801687	rs9323280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q22.3	FBXO34, RP11-665C16.5	rs9323280-C	0.092884	2E-12		0.027114354	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr14	55801686	55801687	rs9323280	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	14q22.3	LGALS3	rs9323280-A	0.87	7E-94		0.77	unit increase	Illumina [5270624] (imputed)	N
1010	chr14	55818402	55818403	rs35070799	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q22.3	LGALS3, FBXO34, RP11-665C16.6, RP11-454L9.2, DLGAP5, RP11-698F20.3, AL158801.1, RP11-665C16.8, RP11-665C16.1, Metazoa_SRP, CHMP4BP1, RP11-665C16.5, ATG14, TBPL2, RPL21P6	rs35070799-C	0.08014113	5E-16	(EA, Galectin-3)	0.6296	[0.48-0.78] unit decrease	Affymetrix [509946]	N
1010	chr14	55821527	55821528	rs79380532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q22.3		rs79380532-A	0.069721	1E-10		0.0470924	[0.033-0.061] unit decrease	Illumina [13478928] (imputed)	N
1010	chr14	55826634	55826636	rs556656573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q22.3	FBXO34	rs556656573-C	0.397365	2E-24		0.024224691	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1010	chr14	55831445	55831452	rs534426436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q22.3		rs534426436-C	NR	1E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1010	chr14	55831445	55831452	rs534426436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q22.3	FBXO34, ATG14	rs534426436-C	0.452845	1E-9		0.014074714	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr14	55831445	55831445	rs567477027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q22.3	NR	rs567477027-D	0.452118	7E-11		0.013947	[0.0098-0.0181] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1010	chr14	55832611	55832612	rs76480089	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	14q22.3		rs76480089-A	0.92	1E-512		0.6247	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1011	chr14	55838825	55838826	rs76997592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q22.3	NR	rs76997592-T	0.916089	2E-123		0.081866	[0.075-0.089] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1011	chr14	55839582	55839583	rs3825615	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	14q22.3		rs3825615-T	0.045	8E-22		0.208	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1011	chr14	55863197	55863198	rs72717751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	14q22.3	ATG14	rs72717751-C	0.0943	9E-10		0.03767276	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1011	chr14	55871451	55871452	rs6573020	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q22.3		rs6573020-T	0.43	4E-9		5.88	z score increase	Affymetrix [9061022] (imputed)	N
1011	chr14	55871451	55871452	rs6573020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q22.3	ATG14	rs6573020-T	0.433965	2E-17		0.019181043	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr14	55871451	55871452	rs6573020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.3	NR	rs6573020-T	0.441936	4E-24				Affymetrix, Illumina [19872809] (imputed)	N
1011	chr14	55871451	55871452	rs6573020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q22.3	NR	rs6573020-T	0.433436	2E-24		0.020574	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1011	chr14	55871451	55871452	rs6573020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q22.3		rs6573020-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1011	chr14	55880046	55880047	rs1009647	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	14q22.3	ATG14, DLGAP5, FBXO34, LGALS3, TBPL2	rs1009647-G	0.73	3E-8		1.15	[1.10-1.21]	Illumina [at least 371504] (imputed)	N
1011	chr14	55887702	55887703	rs9635231	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q22.3	NR	rs9635231-T	0.496	7E-7	(Females)	0.240479	[0.15-0.33] unit decrease	Illumina [~ 6600000] (imputed)	N
1011	chr14	55888212	55888213	rs12886310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q22.3	TBPL2	rs12886310-G	0.190737	6E-12		0.019795017	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr14	55897537	55897538	rs4470077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q22.3	TBPL2	rs4470077-G	0.1909	3E-10		0.02934587	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1011	chr14	55904425	55904426	rs713477	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q22.3	TBPL2	rs713477-A	0.49	2E-7		0.163972	[0.1-0.23] unit decrease	Illumina [~ 6600000] (imputed)	N
1011	chr14	55919479	55919480	rs34652660	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q22.3	TBPL2	rs34652660-A	0.476	4E-6		0.165014	[0.095-0.235] unit decrease	Illumina [~ 6600000] (imputed)	N
1011	chr14	55919479	55919480	rs34652660	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q22.3	TBPL2	rs34652660-A	0.476	1E-8		0.197509	[0.13-0.27] unit decrease	Illumina [~ 6600000] (imputed)	N
1011	chr14	55920869	55920870	rs72717793	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	14q22.3	NR	rs72717793-A	0.228085	6E-6		1.137	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1011	chr14	55921560	55921561	rs11851435	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs11851435-?	NR	9E-9	(right putamen)			NR [9227495] (imputed)	N
1011	chr14	55927032	55927033	rs141874014	34404248	Tsao YC	2021-08-18	Cephalalgia	Genome-wide association study reveals susceptibility loci for self-reported headache in a large community-based Asian population.	Headache	2,084 Taiwanese ancestry cases, 11,822 Taiwanese ancestry controls	NA	14q22.3		rs141874014-G	0.0016	1E-7		3.621	[2.167-6.049]	Affymetrix [7842171] (imputed)	N
1011	chr14	55940192	55940193	rs7144510	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs7144510-?	NR	1E-8	(right putamen)			NR [9227495] (imputed)	N
1011	chr14	55965723	55965724	rs7146055	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs7146055-?	NR	5E-9	(left putamen)			NR [9227495] (imputed)	N
1011	chr14	55965723	55965724	rs7146055	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs7146055-?	NR	2E-10	(right putamen)			NR [9227495] (imputed)	N
1012	chr14	55996638	55996639	rs117489850	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KTN1-AS1	rs117489850-?	NR	3E-11		2.0684	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1012	chr14	55999724	55999725	rs2181743	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	14q22.3	TBPL2, KTN1	rs2181743-?	NR	5E-6		2.173913		Illumina [6778521] (imputed)	N
1012	chr14	55999724	55999725	rs2181743	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	14q22.3	RPL7AP4	rs2181743-?	NR	4E-8		42.987	[27.65-58.33] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1012	chr14	56005242	56005243	rs28393008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q22.3		rs28393008-C	NR	2E-9		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1012	chr14	56015497	56015498	rs4901589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	14q22.3		rs4901589-C	NR	3E-8		0.0144	[0.0093-0.0195] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1012	chr14	56018828	56018829	rs6573037	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs6573037-?	NR	9E-13	(left putamen)			NR [9227495] (imputed)	N
1012	chr14	56018828	56018829	rs6573037	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs6573037-?	NR	8E-14	(right putamen)			NR [9227495] (imputed)	N
1012	chr14	56022791	56022792	rs6573038	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	14q22.3	KTN1	rs6573038-T	NR	4E-6	(women)	0.179	[0.1-0.26] unit increase	Illumina [5527232] (imputed)	N
1012	chr14	56027814	56027815	rs6573040	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs6573040-?	NR	3E-10	(right putamen)			NR [9227495] (imputed)	N
1012	chr14	56027814	56027815	rs6573040	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs6573040-?	NR	3E-10	(left putamen)			NR [9227495] (imputed)	N
1012	chr14	56031609	56031610	rs6573042	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	14q22.3	KTN1-AS1	rs6573042-C	0.5846	2E-6		0.0086	[0.0051-0.0121] unit increase	Affymetrix [~ 7740000] (imputed)	N
1012	chr14	56078738	56078739	rs1138345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.3		rs1138345-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1013	chr14	56105477	56105478	rs1951888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	14q22.3	KTN1	rs1951888-A	0.9983	6E-6		0.7913	[0.45-1.13] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr14	56136561	56136562	rs3783654	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs3783654-?	NR	5E-13	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56136561	56136562	rs3783654	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs3783654-?	NR	2E-14	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56181517	56181518	rs10130783	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs10130783-?	NR	8E-9	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56181517	56181518	rs10130783	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs10130783-?	NR	2E-10	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56186033	56186034	rs1953354	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs1953354-?	NR	1E-20	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56186033	56186034	rs1953354	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs1953354-?	NR	1E-20	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	14q22.3	NR	rs8014725-?		3E-32				NR [7428630] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	14q22.3	SNX2, SNX24, PPIC	rs8014725-?		8E-35				NR [7428630] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	14q22.3	FOXP1	rs8014725-?		2E-32				NR [7428630] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs8014725-?	NR	6E-10	(right pallidum)			NR [9227495] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs8014725-?	NR	4E-12	(left pallidum)			NR [9227495] (imputed)	N
1013	chr14	56186952	56186953	rs8014725	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs8014725-?	NR	1E-39	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56191412	56191413	rs8012377	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q22.3	KTN1	rs8012377-?		3E-17				NR [7428630] (imputed)	N
1013	chr14	56193271	56193272	rs10129414	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs10129414-A	0.4521	2E-50		14.92	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193271	56193272	rs10129414	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs10129414-A	0.4526	4E-14		7.572	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193271	56193272	rs10129414	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	14q22.3	NR	rs10129414-A	0.4465	9E-9		5.744	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193271	56193272	rs10129414	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs10129414-A	0.4522	1E-9		6.046	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193699	56193700	rs148470213	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs148470213-T	0.5308	6E-40		13.229	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193699	56193700	rs148470213	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs148470213-T	0.5297	2E-12		7.054	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193699	56193700	rs148470213	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	14q22.3	NR	rs148470213-T	0.5383	5E-7		5.043	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56193699	56193700	rs148470213	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs148470213-T	0.5308	1E-10		6.442	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56194952	56194953	rs34427491	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs34427491-?	NR	2E-14	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56194952	56194953	rs34427491	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs34427491-?	NR	1E-14	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56195761	56195762	rs868202	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs868202-T	0.5469	1E-49		14.807	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56195761	56195762	rs868202	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs868202-T	0.5464	8E-14		7.478	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56195761	56195762	rs868202	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	14q22.3	NR	rs868202-T	0.5529	7E-9		5.8	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56195761	56195762	rs868202	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs868202-T	0.547	1E-9		6.107	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56199047	56199048	rs8017172	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs8017172-?	NR	7E-37	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56199047	56199048	rs8017172	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	14q22.3	RPL13AP3	rs8017172-?	NR	2E-24		60.488	[48.78-72.20] mm3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1013	chr14	56199047	56199048	rs8017172	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	14q22.3	NR	rs8017172-G	NR	2E-7		1.0615711	[1.04-1.08]	Illumina [11933700] (imputed)	N
1013	chr14	56200472	56200473	rs945270	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs945270-C	0.5671	7E-53		15.305	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56200472	56200473	rs945270	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs945270-C	0.5671	1E-13		7.444	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56200472	56200473	rs945270	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	14q22.3	NR	rs945270-C	0.574	7E-9		5.785	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56200472	56200473	rs945270	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q22.3	NR	rs945270-C	0.5669	3E-9		5.923	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56200472	56200473	rs945270	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	14q22.3	KTN1	rs945270-C	0.58	1E-33	(Putamen, EA)	48.89	[40.97-56.81] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr14	56205029	56205030	rs17253792	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	14q22.3	RPL13AP3	rs17253792-?	NR	3E-7		51.776	[31.93-71.62] mm3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1013	chr14	56206213	56206214	rs11158050	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs11158050-?	NR	7E-12	(left putamen)			NR [9227495] (imputed)	N
1013	chr14	56206213	56206214	rs11158050	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q22.3	NR	rs11158050-?	NR	3E-13	(right putamen)			NR [9227495] (imputed)	N
1013	chr14	56221818	56221819	rs60409861	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	14q22.3		rs60409861-A	0.01	5E-8		1.0	[0.65-1.35] unit increase	NR [NR] (imputed)	N
1013	chr14	56225215	56225216	rs71412696	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	14q22.3	KTN1, RPL13AP3	rs71412696-G	0.057602	9E-6		0.640893	[0.36-0.92] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1014	chr14	56231799	56231800	rs7494275	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	14q22.3	RPL13AP3	rs7494275-C	0.406	9E-6	(Recessive model)	1.732	[1.232-2.433]	Illumina [733202]	N
1014	chr14	56233560	56233561	rs12589473	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	14q22.3		rs12589473-A	NR	5E-8		1.1389521	[1.09-1.19]	Affymetrix [7846216] (imputed)	N
1014	chr14	56245452	56245453	rs72622473	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	14q22.3		rs72622473-A	0.99	3E-15				NR [NR] (imputed)	N
1014	chr14	56245452	56245453	rs72622473	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	14q22.3		rs72622473-A	0.99	3E-10		0.93	[0.58-1.28] unit decrease	NR [NR] (imputed)	N
1014	chr14	56245452	56245453	rs72622473	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed)	9,567 European ancestry individuals	NA	14q22.3		rs72622473-A	0.99	2E-7		0.93	[0.58-1.28] unit decrease	NR [NR] (imputed)	N
1014	chr14	56253403	56253404	rs12898084	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	14q22.3	NR	rs12898084-?	NR	9E-6		0.01556	[0.0087-0.0224] unit decrease	Affymetrix [9658292] (imputed)	N
1014	chr14	56289039	56289040	rs117922352	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	14q22.3	NR	rs117922352-?	NR	2E-6		0.1708	[0.1-0.24] unit increase	Illumina [~ 7800000] (imputed)	N
1014	chr14	56333512	56333513	rs7350721	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	14q22.3	PELI2, LOC645687	rs7350721-C	0.09	2E-6	(AA, ever vs never smoking)	0.02	[0.01-0.02] unit increase	Affymetrix [706791]	N
1014	chr14	56333512	56333513	rs7350721	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index  (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	14q22.3	PELI2, LOC645687	rs7350721-C	0.09	6E-7	(AA)	0.41	[0.25-0.58] unit increase	Affymetrix [706791]	N
1014	chr14	56356920	56356921	rs73276024	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q22.3	Intergenic	rs73276024-A	0.825	3E-6	(AA)	0.02	unit decrease	Illumina [NR] (imputed)	N
1015	chr14	56361737	56361738	rs35862341	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	14q22.3	intergenic	rs35862341-C	0.9866	4E-6	(Complete)	1.521	[0.87-2.17] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1015	chr14	56393105	56393106	rs4898878	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Height	2,754 Bangladeshi ancestry females, 2,590 Bangladeshi ancestry males	NA	14q22.3	LINC00520, PELI2	rs4898878-A	0.709	9E-7		0.006	[0.0040-0.0080] m increase	Illumina [1208102] (imputed)	N
1015	chr14	56418118	56418119	rs10151037	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q22.3	LINC00520	rs10151037-A	0.24	8E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1016	chr14	56525568	56525569	rs398652	21460395	Gu J	2011-04-02	Cancer Prev Res (Phila)	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 individuals	1,160 individuals	14q22.3	PELI2	rs398652-?	NR	2E-6		0.12	[NR] unit increase	Illumina [312531]	N
1016	chr14	56550641	56550642	rs241558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q22.3	Intergenic	rs241558-A	0.5031	1E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr14	56550641	56550642	rs241558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q22.3	Intergenic	rs241558-G	0.4969	4E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1016	chr14	56554366	56554367	rs773282084	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	14q22.3	AL163952.2	rs773282084-A	0.0011	7E-6		0.9971	[0.56-1.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1016	chr14	56606549	56606550	rs242423	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q22.3	NR	rs242423-?	NR	2E-6	(AA)	6.72	[5.54-7.9]	Illumina [905956]	N
1016	chr14	56618155	56618156	rs117744226	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	14q22.3	PLI2	rs117744226-?	NR	5E-6	(PS matching analysis)	3.79	NR	Affymetrix [345072]	N
1017	chr14	56647743	56647744	rs12888678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.3		rs12888678-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1017	chr14	56663759	56663760	rs242402	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	14q22.3	NR	rs242402-?	NR	9E-7		0.03245	[0.019-0.045] unit decrease	Affymetrix [9658292] (imputed)	N
1018	chr14	56825070	56825071	rs115007604	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	14q22.3	PELI2	rs115007604-A	0.008	9E-7		2.67	[1.81-3.95]	Illumina [1438399] (imputed)	N
1018	chr14	56876958	56876959	rs1189020	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	14q22.3	PELI2	rs1189020-T	0.06	9E-7		1.61	[NR]	Illumina [5430816] (imputed)	N
1019	chr14	56886685	56886686	rs17832777	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	14q22.3	PELI2	rs17832777-C	0.17	6E-6	(TNFA)			Illumina [588352]	N
1019	chr14	56948758	56948759	rs17091524	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	14q22.3	NR	rs17091524-C		2E-6		0.4924	[0.29-0.69] SD units decrease	NR [10700000] (imputed)	N
1020	chr14	57066929	57066930	rs17091770	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	14q22.3	TMEM260	rs17091770-?		5E-6				Illumina [2668805]	N
1020	chr14	57067723	57067724	rs10149699	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	14q22.3	NR	rs10149699-G	NR	1E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1020	chr14	57067723	57067724	rs10149699	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	14q22.3	NR	rs10149699-G	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
1020	chr14	57112284	57112285	rs148485005	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q22.3	NR	rs148485005-?	NR	1E-9				Illumina [7760689] (imputed)	N
1020	chr14	57145061	57145062	rs2225291	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	14q22.3	NR	rs2225291-G	0.3308	5E-6		0.0511159	NR unit increase	Illumina [560351]	N
1021	chr14	57199081	57199082	rs144995469	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	14q22.3	Intergenic	rs144995469-T	0.03	1E-6		1.15	[0.7-1.6] unit decrease	Illumina [~ 31000000] (imputed)	N
1021	chr14	57221138	57221139	rs878889	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	14q22.3	intergenic	rs878889-A	0.13	8E-7	(ESRD)	1.43	[1.24-1.65]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1021	chr14	57269824	57269825	rs698015	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q22.3		rs698015-C	0.346	3E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1021	chr14	57271126	57271127	rs2277499	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	14q22.3	OTX2, RP11-1085N6.6	rs2277499-T	0.34	2E-12		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1021	chr14	57274518	57274519	rs1123285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q22.3	NR	rs1123285-G	0.335	2E-11		0.00944268	[0.0067-0.0122] unit decrease	NR [~ 9732723] (imputed)	N
1021	chr14	57274518	57274519	rs1123285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	14q22.3	NR	rs1123285-G	0.335	8E-9		0.008897365	[0.0059-0.0119] unit decrease	NR [~ 10000000] (imputed)	N
1021	chr14	57274518	57274519	rs1123285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q22.3		rs1123285-C	0.6659	2E-10		0.0094	[0.0065-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1022	chr14	57279582	57279583	rs928109	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q22.3	OTX2	rs928109-?		6E-11				Affymetrix, Illumina [NR] (imputed)	N
1022	chr14	57280045	57280046	rs61997667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q22.3	Intergenic	rs61997667-T	0.1525	2E-13	(MTAG)	0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr14	57280045	57280046	rs61997667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q22.3		rs61997667-T	0.1511	2E-13		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1022	chr14	57280045	57280046	rs61997667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q22.3	Intergenic	rs61997667-T	0.1511	2E-13	(MTAG)	0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr14	57281153	57281154	rs962961	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q22.3		rs962961-T	0.34	2E-20		9.24	z score increase	Affymetrix [9061022] (imputed)	N
1022	chr14	57281153	57281154	rs962961	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q22.3	OTX2, EXOC5	rs962961-C	0.6692	4E-11		1.0221416		Affymetrix [11880941] (imputed)	N
1022	chr14	57281153	57281154	rs962961	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	14q22.3	OTX2OS1	rs962961-T	0.326	4E-9		0.0159	[0.011-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1022	chr14	57283282	57283283	rs198262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q22.3		rs198262-T	0.9574	1E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1022	chr14	57283933	57283934	rs2274794	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q22.3	OTX2-AS1	rs2274794-C	0.6723	8E-7		0.0053	[0.0031-0.0075] unit increase	Affymetrix [~ 7740000] (imputed)	N
1022	chr14	57283967	57283968	rs2274793	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	14q22.3		rs2274793-?	NR	2E-12		0.0219	unit decrease	NR [NR]	N
1022	chr14	57283967	57283968	rs2274793	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	14q22.3	NR	rs2274793-T	0.3264	8E-10		0.013471862	[0.0092-0.0178] unit decrease	Affymetrix [10613246] (imputed)	N
1022	chr14	57283967	57283968	rs2274793	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	14q22.3	NR	rs2274793-T	0.329	1E-11		0.012425059	[0.0088-0.016] unit decrease	Affymetrix [NR] (imputed)	N
1022	chr14	57283967	57283968	rs2274793	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	14q22.3	OTX2	rs2274793-T	0.327	8E-9		0.013708469	[0.009-0.0184] unit decrease	Affymetrix [11514936] (imputed)	N
1022	chr14	57287963	57287964	rs12431576	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q22.3		rs12431576-C	0.34	6E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
1022	chr14	57287963	57287964	rs12431576	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q22.3	NR	rs12431576-C	0.3249	1E-11				NR [9056863] (imputed)	N
1022	chr14	57288595	57288596	rs2128673	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	14q22.3	NR	rs2128673-G	0.141153	1E-8		0.05773426	[0.038-0.077] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1022	chr14	57295403	57295404	rs11627348	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	14q22.3	NR	rs11627348-A	NR	1E-8		0.01887	NR unit increase	NR [7259579]	N
1022	chr14	57295403	57295404	rs11627348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q22.3		rs11627348-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1022	chr14	57295403	57295404	rs11627348	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q22.3	NR	rs11627348-A	NR	3E-8		5.57	z score increase	Affymetrix [10847151] (imputed)	N
1022	chr14	57295403	57295404	rs11627348	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q22.3	NR	rs11627348-A	0.151394	6E-9		5.8	z score increase	NR [10847151] (imputed)	N
1022	chr14	57297663	57297664	rs7143840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q22.3	Intergenic	rs7143840-T	0.52	3E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr14	57297663	57297664	rs7143840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q22.3	Intergenic	rs7143840-T	0.52	3E-12		0.0136	[0.0097-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1022	chr14	57314429	57314430	rs72717150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q22.3		rs72717150-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1022	chr14	57323524	57323525	rs34057993	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	14q22.3	OTX2, AS1	rs34057993-D	0.17	8E-8		0.9	[0.87-0.94]	Illumina [484196]	N
1022	chr14	57337017	57337018	rs76398229	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q22.3	NR	rs76398229-A	0.0455	4E-8	(Lateral Occipital)	34.879707	[22.42-47.34] unit decrease	Affymetrix, Illumina [NR]	N
1022	chr14	57342911	57342912	rs860326	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	14q22.3		rs860326-C	0.428	3E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1022	chr14	57348921	57348922	rs860324	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q22.3	NR	rs860324-T	0.666	2E-11		0.00766963	[0.0054-0.0099] unit decrease	NR [9732723] (imputed)	N
1022	chr14	57376297	57376298	rs2656108	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	14q22.3	NA	rs2656108-G		9E-12		0.0136615	[0.0097-0.0176] unit increase	Illumina [13288253] (imputed)	N
1022	chr14	57378911	57378912	rs56376592	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	14q22.3		rs56376592-A	0.8217	1E-9		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1022	chr14	57406950	57406951	rs709984	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.3	NR	rs709984-?	NR	8E-28				Affymetrix [NR]	N
1023	chr14	57433487	57433488	rs11621547	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q22.3	NR	rs11621547-?	NR	4E-6		4.625	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1023	chr14	57446272	57446273	rs11845537	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	14q22.3	OTX2-AS1	rs11845537-A	0.01467	6E-24		5.625	[5.25-6]	Illumina [281811]	N
1023	chr14	57446272	57446273	rs11845537	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	14q22.3	OTX2-AS1	rs11845537-A	0.01467	5E-12		6.195	[5.6-6.79]	Illumina [281811]	N
1023	chr14	57446272	57446273	rs11845537	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (adult)	65 European ancestry cases, 5,606 European ancestry controls	NA	14q22.3	OTX2-AS1	rs11845537-A	0.01467	4E-13		7.073	[6.46-7.69]	Illumina [281811]	N
1023	chr14	57446272	57446273	rs11845537	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	14q22.3	OTX2-AS1	rs11845537-A	0.01467	7E-22		6.587	[6.15-7.03]	Illumina [281811]	N
1023	chr14	57450863	57450864	rs57618243	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	14q22.3	RPL3P3	rs57618243-?		7E-6				Illumina [7405822] (imputed)	N
1023	chr14	57482540	57482541	rs4898923	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	14q22.3	NR	rs4898923-C		3E-6		0.2575	[0.15-0.37] unit decrease	Illumina [12759548] (imputed)	N
1023	chr14	57534144	57534145	rs2146858	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	14q22.3	OTX2, EXOCS5	rs2146858-?	NR	2E-7		2.44		Illumina [6778521] (imputed)	N
1024	chr14	57546028	57546029	rs1189835	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q22.3	NR	rs1189835-?		6E-7				Illumina [4322238] (imputed)	N
1024	chr14	57546327	57546328	rs41485546	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.3	NR	rs41485546-?	NR	3E-14				Affymetrix [NR]	N
1024	chr14	57607066	57607067	rs7144018	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		14q22.3	NR	rs7144018-G	0.1	9E-6	(t4;14 vs. controls)	1.85	[1.41-2.44]	Illumina [414804] (imputed)	N
1024	chr14	57618198	57618199	rs112548923	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	14q22.3	NR	rs112548923-T	0.9640619	6E-6		1.1299435	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
1024	chr14	57649430	57649431	rs79198292	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Physical health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	14q22.3	intergenic	rs79198292-A	0.022	2E-7		10.46	[6.52-14.4] unit decrease	Illumina [7254516] (imputed)	N
1024	chr14	57649553	57649554	rs11848373	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	14q22.3	OTX2-AS1, EXOC5	rs11848373-?		6E-6	(African American)	0.116439104	[0.066-0.167] unit decrease	Illumina [13620258] (imputed)	N
1024	chr14	57669532	57669533	rs11851015	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		14q22.3	EXOC5	rs11851015-?	0.15	9E-6		0.11	[0.071-0.149] unit increase	Illumina [4058415] (imputed)	N
1025	chr14	57687645	57687646	rs75165563	30054556	Akiyama M	2018-07-27	J Hum Genet	Genome-wide association study suggests four variants influencing outcomes with ranibizumab therapy in exudative age-related macular degeneration.	Response to ranibizumab in age-related macular degeneration (exudative)	361 Japanese ancestry responder cases, 73 Japanese ancestry non-responder controls	363 Japanese ancestry responder cases, 122 Japanese ancestry non-responder controls	14q22.3	EXOC5	rs75165563-C	0.070	7E-7		3.28	[2.02-5.33]	Illumina [6826359] (imputed)	N
1025	chr14	57741118	57741119	rs142171275	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	14q22.3	MUDENG	rs142171275-G	3.0E-4	9E-6		4.445	unit decrease	Illumina [179215]	N
1026	chr14	57822215	57822216	rs7144649	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		14q22.3	intergenic	rs7144649-?	0.23	4E-6		0.09	[0.051-0.129] unit increase	Illumina [4058415] (imputed)	N
1026	chr14	57852961	57852962	rs8012255	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q22.3	NR	rs8012255-?	NR	8E-11				Affymetrix [NR]	N
1026	chr14	57857161	57857162	rs11158159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	14q22.3		rs11158159-C	NR	2E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1026	chr14	57857161	57857162	rs11158159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q22.3	NAA30	rs11158159-C	0.773426	8E-27		0.029660685	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr14	57857161	57857162	rs11158159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q22.3	NAA30	rs11158159-C	0.773434	4E-30		0.03154812	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr14	57857161	57857162	rs11158159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q22.3	NR	rs11158159-C	0.744536	5E-25				Affymetrix, Illumina [19905671] (imputed)	N
1026	chr14	57857161	57857162	rs11158159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q22.3	NR	rs11158159-C	0.769788	5E-28		0.028179	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1026	chr14	57858193	57858194	rs45583845	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q22.3	NAA30	rs45583845-C	NR	1E-8		0.0205187	[0.013-0.028] unit increase	Affymetrix [10061374] (imputed)	N
1026	chr14	57890701	57890702	rs74988258	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q22.3	NR	rs74988258-A	0.0122	2E-8	(AKR1B10)	2.015	NR unit increase	Illumina [1671387] (imputed)	N
1027	chr14	58034569	58034570	rs1508945	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	14q22.3	SLC35F4	rs1508945-?	0	2E-6				Affymetrix [547296]	N
1027	chr14	58060483	58060484	rs140817157	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q22.3	NR	rs140817157-?	NR	3E-8				Illumina [7760689] (imputed)	N
1028	chr14	58100282	58100283	rs12891191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.1		rs12891191-C	0.5179	1E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr14	58102522	58102523	rs1998459	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q23.1	Intergenic	rs1998459-A	0.4837	1E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr14	58102522	58102523	rs1998459	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.1	Intergenic	rs1998459-A	0.4832	9E-10	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr14	58119195	58119196	rs10134944	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q23.1	NR	rs10134944-?	NR	1E-6	(dominant)			Affymetrix [NR]	N
1028	chr14	58119195	58119196	rs10134944	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q23.1	NR	rs10134944-T	0.09	7E-6		1.45	[1.24-1.68]	Affymetrix [469557]	N
1028	chr14	58175908	58175909	rs1092055	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	14q23.1	SLC35F4	rs1092055-T	NR	8E-7		0.88	percent increase	Affymetrix [8762422] (imputed)	N
1029	chr14	58200724	58200725	rs1092015	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	14q23.1	NR	rs1092015-?	NR	8E-6		2.0443	[NR]	Affymetrix [722112]	N
1029	chr14	58202428	58202429	rs1092013	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	14q23.1	NR	rs1092013-?		9E-6		10.7514	[6.04-15.46] unit decrease	NR [NR] (imputed)	N
1029	chr14	58295586	58295587	rs147222280	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q23.1		rs147222280-?	NR	2E-9		2.1167	[1.42-2.81] unit decrease	Affymetrix [NR] (imputed)	N
1029	chr14	58300172	58300173	rs76126356	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs76126356-C	0.01045	9E-9	(AKR1C3)	0.5767	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr14	58300172	58300173	rs76126356	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs76126356-C	0.01045	5E-10	(AKR1B10)	2.415	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr14	58311134	58311135	rs927251	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer	204 cases	NA	14q23.1	SLC35F4	rs927251-?		9E-6		0.083	[0.048-0.118] unit increase	Affymetrix [418365]	N
1029	chr14	58323244	58323245	rs74055819	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs74055819-C	0.02265	1E-8	(RAB14)	0.01624	NR unit increase	Illumina [1671387] (imputed)	N
1030	chr14	58355047	58355048	rs8013190	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	14q23.1	intergenic	rs8013190-?	NR	7E-8	(progression)			Illumina [NR]	N
1030	chr14	58369292	58369293	rs5002617	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q23.1	SLC35F4, C14orf37, UBA52P3	rs5002617-G	NR	1E-6	(mid-sleep time)	0.3423	[0.21-0.48] unit increase	Affymetrix [7141204] (imputed)	N
1030	chr14	58385364	58385365	rs1335515	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	14q23.1	intergenic	rs1335515-C	NR	8E-6	(earlier onset)			Perlegen [429981]	N
1030	chr14	58397915	58397916	rs808225	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	14q23.1	intergenic	rs808225-?	NR	7E-6	(ppfefrat)			Affymetrix [70897]	N
1030	chr14	58405678	58405679	rs878085	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	NA		rs878085-A	NR	6E-7	14	0.79	unit increase	Illumina [487523]	N
1031	chr14	58514672	58514673	rs11628732	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	14q23.1	C14orf37	rs11628732-G	0.1513	2E-6		0.0701941	NR unit increase	Illumina [560351]	N
1031	chr14	58526817	58526818	rs9323326	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	14q23.1	SLC35F4, C14orf37	rs9323326-A	NR	9E-10	(Proteobacteria phylum)	0.21	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1031	chr14	58559240	58559241	rs4901847	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	14q23.1	C14orf37	rs4901847-T	NR	2E-6	(Additive)	1.48	[1.28-1.71]	Affymetrix, Illumina [1621689] (imputed)	N
1031	chr14	58576319	58576320	rs11158198	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	14q23.1	C14orf37	rs11158198-C	0.492	2E-6	(Primary)	0.286	[0.17-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1032	chr14	58653513	58653514	rs9323328	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q23.1	NR	rs9323328-G	0.537	2E-10		0.00694448	[0.0048-0.0091] unit decrease	NR [9732723] (imputed)	N
1032	chr14	58653513	58653514	rs9323328	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q23.1	NR	rs9323328-G	0.537	3E-8		0.01423703	[0.0092-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
1032	chr14	58665282	58665283	rs61975915	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q23.1	C14orf37	rs61975915-C	0.70224	4E-8		0.0121152	[0.0078-0.0164] unit increase	Affymetrix [NR] (imputed)	N
1032	chr14	58669659	58669661	rs111562516	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	14q23.1		rs111562516-?	NR	9E-6		1.04928	[1.03-1.07]	NR [685523]	N
1032	chr14	58677448	58677449	rs58244431	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	14q23.1	NR	rs58244431-A		3E-6		0.2576	[0.15-0.37] unit decrease	Illumina [12770451] (imputed)	N
1032	chr14	58685300	58685301	rs71414193	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	14q23.1	ACTR10, C14orf37	rs71414193-A	0.19	2E-11		0.009	[0.007-0.011] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1032	chr14	58699590	58699591	rs5808964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q23.1	C14orf37, ACTR10	rs5808964-C	0.683219	1E-9		0.0149334045	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1032	chr14	58699590	58699591	rs5808964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q23.1	C14orf37, ACTR10	rs5808964-C	0.683396	2E-10		0.01545767	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1032	chr14	58701637	58701638	rs11627138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	14q23.1		rs11627138-T	0.346521	3E-8		0.0239938	[0.015-0.033] unit increase	NR [11722792] (imputed)	N
1032	chr14	58701637	58701638	rs11627138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	14q23.1		rs11627138-T	0.346521	3E-8		0.0240195	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1032	chr14	58706608	58706609	rs28411823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.1	NR	rs28411823-C	0.279518	1E-64				Affymetrix, Illumina [22063850] (imputed)	N
1032	chr14	58706608	58706609	rs28411823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q23.1	NR	rs28411823-C	0.277913	2E-66		0.036201	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1032	chr14	58706608	58706609	rs28411823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q23.1		rs28411823-?	NR	3E-52				NR [~ 8900000] (imputed)	N
1033	chr14	58721904	58721905	rs5808965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q23.1	PSMA3, C14orf37	rs5808965-G	0.72401	4E-13		0.018118534	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr14	58721915	58721916	rs398025232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q23.1		rs398025232-G	NR	4E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1033	chr14	58723545	58723546	rs9743908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.1	NR	rs9743908-T	0.644501	6E-14				Affymetrix, Illumina [24332387] (imputed)	N
1033	chr14	58723708	58723709	rs12890849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q23.1	NR	rs12890849-T	0.718359	3E-14		0.01561	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1033	chr14	58724207	58724208	rs6573197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q23.1	NR	rs6573197-T	0.717145	1E-37		0.027418	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1033	chr14	58725659	58725659	rs34616281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q23.1		rs34616281-TTA	NR	3E-21		0.0203	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1033	chr14	58727897	58727897	rs11402145	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q23.1	C14orf37, PSMA3	rs11402145-AT	0.7004	3E-11		0.02637997	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1033	chr14	58732747	58732748	rs12892257	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q23.1	NR	rs12892257-G	0.4862	1E-8		0.0288	[0.019-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1033	chr14	58737765	58737766	rs8005100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q23.1		rs8005100-T	NR	8E-32		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1033	chr14	58737765	58737766	rs8005100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q23.1	RP11-349A22.5, C14orf37, PSMA3	rs8005100-T	0.7206	5E-10		0.02455333	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1033	chr14	58739536	58739537	rs2180871	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	14q23.1	NR	rs2180871-?	NR	4E-7		0.0572	[0.035-0.079] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1033	chr14	58743751	58743752	rs2348072	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	14q23.1	NR	rs2348072-A	0.7247	3E-12		0.016113289	[0.012-0.021] unit decrease	Affymetrix [10613246] (imputed)	N
1033	chr14	58743751	58743752	rs2348072	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	14q23.1	NR	rs2348072-A	0.727	2E-12		0.013562599	[0.0098-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
1033	chr14	58743751	58743752	rs2348072	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q23.1	PSMA3-AS1	rs2348072-G	0.2827	5E-6		0.0051	[0.0029-0.0073] unit increase	Affymetrix [~ 7740000] (imputed)	N
1033	chr14	58749425	58749426	rs10151752	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	14q23.1	PSMA3-AS1	rs10151752-A	0.440689	1E-5		1.03	[1.02-1.05]	NR [8126035] (imputed)	N
1033	chr14	58750901	58750902	rs2145600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q23.1	RP11-349A22.5, C14orf37	rs2145600-C	0.763	1E-10		0.0172413	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr14	58750901	58750902	rs2145600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.1	NR	rs2145600-G	0.709372	1E-10				Affymetrix, Illumina [21126107] (imputed)	N
1033	chr14	58753773	58753773	rs35995659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	14q23.1		rs35995659-CTT	NR	2E-11		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1033	chr14	58753773	58753773	rs35995659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	14q23.1	NR	rs35995659-I	0.760488	6E-11		0.016124	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1033	chr14	58753773	58753773	rs35995659	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q23.1	C14orf37	rs35995659-CTT	NR	1E-15		0.0359976	[0.027-0.045] unit increase	Affymetrix [16832071] (imputed)	N
1033	chr14	58757493	58757493	rs57030829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q23.1	C14orf37, RP11-349A22.5	rs57030829-G	NR	5E-10		0.017731	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1033	chr14	58757493	58757493	rs57030829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q23.1	C14orf37, RP11-349A22.5	rs57030829-G	NR	1E-9		0.0173419	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1033	chr14	58759960	58759960	rs34782870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.1	RP11-349A22.5, C14orf37	rs34782870-AT	0.727915	3E-53		0.038646296	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr14	58762531	58762532	rs7154498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q23.1	RP11-349A22.5	rs7154498-G	0.716672	3E-36		0.030777104	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr14	58762531	58762532	rs7154498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.1		rs7154498-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1033	chr14	58762531	58762532	rs7154498	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	14q23.1	NR	rs7154498-C	0.2841	1E-13		0.0162	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1033	chr14	58764580	58764581	rs71414197	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q23.1	NR	rs71414197-T	0.945477	3E-9		0.0263893	[0.018-0.035] unit decrease	NR [NR]	N
1033	chr14	58765899	58765900	rs55791516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.1	ARID4A	rs55791516-G	0.735123	5E-10		0.01585666	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr14	58765899	58765900	rs55791516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.1	NR	rs55791516-G	0.661057	5E-33				Affymetrix, Illumina [24246363] (imputed)	N
1033	chr14	58765899	58765900	rs55791516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q23.1	NR	rs55791516-G	0.735535	7E-32		0.026431	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1033	chr14	58765899	58765900	rs55791516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.1	NR	rs55791516-G	0.660355	8E-41				Affymetrix, Illumina [20825802] (imputed)	N
1033	chr14	58765902	58765903	rs61974485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q23.1	ARID4A	rs61974485-C	0.734692	9E-31		0.0267958	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr14	58765902	58765903	rs61974485	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	14q23.1	ARID4A	rs61974485-T	0.2646	4E-8		5.506	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1033	chr14	58765902	58765903	rs61974485	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	14q23.1	NR	rs61974485-T	0.2662	4E-8		5.503	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1033	chr14	58779416	58779417	rs1951202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q23.1		rs1951202-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1033	chr14	58782778	58782779	rs2180870	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	14q23.1	NR	rs2180870-C	0.135	1E-8		0.012177537	[0.008-0.0164] unit decrease	NR [~ 10000000] (imputed)	N
1033	chr14	58784454	58784455	rs8012947	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	14q23.1	ARID4A	rs8012947-A	0.28	4E-8		0.017	[0.011-0.023] unit increase	Affymetrix [12489781] (imputed)	N
1033	chr14	58794000	58794001	rs2145598	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	14q23.1	ARID4A	rs2145598-A	0.5758	4E-8		0.0283	[0.018-0.038] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1033	chr14	58797952	58797953	rs10137475	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q23.1	NR	rs10137475-G	0.4257	4E-8		0.0255	[0.016-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1033	chr14	58797952	58797953	rs10137475	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.1		rs10137475-A	0.5808	2E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q23.1	ARID4A	rs1190982-C	0.694054	3E-9		0.014488634	[0.0097-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q23.1	NR	rs1190982-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q23.1		rs1190982-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	14q23.1	NR	rs1190982-T	0.3	7E-14		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	14q23.1	NR	rs1190982-T	0.3	5E-8				Affymetrix [2446094] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q23.1	NA	rs1190982-T	0.3027	5E-16		0.0157	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1033	chr14	58815838	58815839	rs1190982	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	14q23.1	NR	rs1190982-T	0.3027	5E-16		0.0157	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1033	chr14	58816211	58816212	rs12878359	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q23.1	ARID4A	rs12878359-A	0.465577	5E-10		0.0134448	[0.0092-0.0176] unit decrease	NR [16516521] (imputed)	N
1033	chr14	58829031	58829032	rs8008129	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	14q23.1	NR	rs8008129-?	NR	7E-10				NR [up to 7000000]	N
1033	chr14	58833908	58833909	rs57044214	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	14q23.1	ARID4A	rs57044214-A	0.284	3E-9		0.0166	[0.011-0.022] unit increase	Illumina [~ 250000] (imputed)	N
1033	chr14	58838667	58838668	rs1051860	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	14q23.1	ARID4A	rs1051860-?	NR	1E-8		0.028121	[0.018-0.038] unit decrease	Illumina [4804024] (imputed)	N
1033	chr14	58838667	58838668	rs1051860	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	14q23.1	ARID4A	rs1051860-A	0.4174	4E-6		0.0144	[0.0083-0.0205] unit increase	Affymetrix, Illumina [at least 228985]	N
1033	chr14	58838667	58838668	rs1051860	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	14q23.1	ARID4A	rs1051860-A	0.4086	3E-7		0.0168	[0.01-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
1033	chr14	58838667	58838668	rs1051860	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	14q23.1	ARID4A	rs1051860-A	0.4154	7E-7		0.0111	[0.0068-0.0154] unit increase	Affymetrix, Illumina [at least 228985]	N
1033	chr14	58838667	58838668	rs1051860	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	14q23.1	ARID4A	rs1051860-A	0.4108	2E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [at least 228985]	N
1033	chr14	58838667	58838668	rs1051860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q23.1	Intergenic	rs1051860-A	0.4067	1E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr14	58838667	58838668	rs1051860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.1		rs1051860-A	0.4071	3E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1033	chr14	58838667	58838668	rs1051860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.1	Intergenic	rs1051860-A	0.4071	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr14	58838700	58838701	rs1051861	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q23.1		rs1051861-C	0.41	2E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1033	chr14	58844525	58844526	rs11158204	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	14q23.1	ARID4A	rs11158204-C	NR	2E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [12923718] (imputed)	N
1033	chr14	58844525	58844526	rs11158204	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	14q23.1	NR	rs11158204-?	NR	2E-8		0.065	[0.042-0.088] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1034	chr14	58899156	58899157	rs534542684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	14q23.1	KIAA0586	rs534542684-A	0.0043	8E-6		0.2854	[0.16-0.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1034	chr14	58920449	58920450	rs61974535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q23.1		rs61974535-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1034	chr14	58937451	58937452	rs78511804	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q23.1		rs78511804-?	NR	8E-9		1.7996	[1.19-2.41] unit decrease	Affymetrix [NR] (imputed)	N
1034	chr14	58937833	58937834	rs1743714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q23.1	KIAA0586	rs1743714-C	NR	2E-9		0.0200132	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1035	chr14	59001271	59001272	rs8005231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q23.1	KIAA0586	rs8005231-C	NR	2E-9		0.0195305	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1035	chr14	59063841	59063842	rs7155669	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs7155669-A	0.3198	6E-9	(Inferior Temporal)	12.5956135	[8.35-16.84] unit increase	Affymetrix, Illumina [NR]	N
1035	chr14	59064738	59064739	rs170239	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs170239-T	0.4381	3E-10	(Cuneus)	5.7099524	[3.94-7.48] unit decrease	Affymetrix, Illumina [NR]	N
1035	chr14	59069052	59069053	rs221326	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	NR	rs221326-?		9E-22				NR [7428630] (imputed)	N
1035	chr14	59069052	59069053	rs221326	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs221326-T	0.4694	2E-13	(Supramarginal)	17.53651	[12.86-22.21] unit increase	Affymetrix, Illumina [NR]	N
1035	chr14	59071724	59071725	rs149142	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs149142-T	0.6045	6E-16	(Banks of the Superior Temporal Sulcus)	0.006469715	[0.0049-0.008] unit decrease	Affymetrix, Illumina [NR]	N
1035	chr14	59072143	59072144	rs10782438	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	KIAA0586	rs10782438-?		9E-21	(Middletemporal)			Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59072225	59072226	rs186347	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	14q23.1	DACT1	rs186347-G	0.458	2E-11		6.6996765	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1035	chr14	59072225	59072226	rs186347	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	KIAA0586	rs186347-?		1E-15	(Banksts)			Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59072225	59072226	rs186347	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	KIAA0586	rs186347-?		5E-18	(Banksts)			Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59074135	59074136	rs160459	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q23.1		rs160459-?	NR	9E-111				NR [9705931] (imputed)	N
1035	chr14	59074135	59074136	rs160459	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	14q23.1	DACT1	rs160459-C	0.46	5E-12				NR [9312144] (imputed)	N
1035	chr14	59074135	59074136	rs160459	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	14q23.1	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs160459-?		2E-9				NR [7428630] (imputed)	N
1035	chr14	59074135	59074136	rs160459	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	SRD5A3, TMEM165, CLOCK, PDCL2, NMU	rs160459-?		2E-31				NR [7428630] (imputed)	N
1035	chr14	59074135	59074136	rs160459	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	14q23.1	ROBO2	rs160459-?		6E-9				NR [7428630] (imputed)	N
1035	chr14	59074135	59074136	rs160459	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	C14orf37, ACTR10, PSMA3, AL132989.1, ARID4A, TOMM20L, TIMM9, KIAA0586, DACT1	rs160459-?		6E-54				NR [7428630] (imputed)	N
1035	chr14	59074135	59074136	rs160459	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs160459-A	0.5288	1E-16	(Middle Temporal)	0.006240365	[0.0048-0.0077] unit decrease	Affymetrix, Illumina [NR]	N
1035	chr14	59074135	59074136	rs160459	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	14q23.1	DACT1	rs160459-C	NR	2E-17		7.45	NR mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59074135	59074136	rs160459	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal subfield CA1 volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	14q23.1	DACT1	rs160459-C	NR	2E-10		2.98	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59074135	59074136	rs160459	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus granule cell layer volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	14q23.1	DACT1	rs160459-C	NR	2E-9		1.53	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59074877	59074878	rs160458	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	KIAA0586	rs160458-?		6E-18	(Banksts)			Affymetrix, Illumina [NR] (imputed)	N
1035	chr14	59074877	59074878	rs160458	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs160458-T	0.5082	6E-16	(Banks of the Superior Temporal Sulcus)	5.231486	[3.97-6.5] unit decrease	Affymetrix, Illumina [NR]	N
1035	chr14	59081085	59081086	rs3850300	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.1	NR	rs3850300-?	NR	5E-9				Affymetrix [NR]	N
1035	chr14	59082661	59082662	rs74326053	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q23.1		rs74326053-?	NR	3E-9		1.8907	[1.27-2.52] unit decrease	Affymetrix [NR] (imputed)	N
1035	chr14	59095284	59095285	rs160468	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	14q23.1	NR	rs160468-?		1E-8				NR [7428630] (imputed)	N
1035	chr14	59107962	59107962	rs139954761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q23.1	NR	rs139954761-T	0.94121	1E-8		0.015567	[0.01-0.021] unit increase	Affymetrix [16578495] (imputed)	N
1035	chr14	59111735	59111736	rs181625218	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q23.1		rs181625218-?	NR	2E-8		1.7689	[1.15-2.38] unit decrease	Affymetrix [NR] (imputed)	N
1036	chr14	59138970	59138971	rs311844	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.1	NR	rs311844-?	NR	4E-6				Affymetrix [NR]	N
1036	chr14	59144954	59144955	rs311837	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.1	KIAA0586	rs311837-?	NR	9E-6	(argininosuccinate)	0.7805107	[0.44-1.12] unit increase	Affymetrix [at least 2500000] (imputed)	N
1036	chr14	59145327	59145328	rs755036	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.1	KIAA0586	rs755036-?	NR	1E-6	(pyruvate)	4.258247	[2.52-5.99] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1036	chr14	59189360	59189361	rs17094983	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	14q23.1	NR	rs17094983-G	0.8809	5E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
1036	chr14	59189360	59189361	rs17094983	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	14q23.1	NR	rs17094983-G	0.879	8E-10	(EA)	1.1111112	[1.08-1.15]	Affymetrix, Illumina [12931465] (imputed)	N
1036	chr14	59189360	59189361	rs17094983	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	14q23.1	intergenic	rs17094983-?	0.13	3E-6		1.13	[1.08-1.20]	Affymetrix, Illumina [2708280] (imputed)	N
1036	chr14	59208436	59208437	rs8020436	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	14q23.1	DACT1	rs8020436-A	0.4016	5E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1036	chr14	59236306	59236307	rs7147087	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	14q23.1	RPL31P4, XR_429367.1	rs7147087-T	0.92	5E-6		1.5873016		Affymetrix [at least 730985] (imputed)	N
1037	chr14	59291040	59291041	rs85431	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.1	KIAA0586	rs85431-?	NR	6E-6	(glucuronate)	0.22213846	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1037	chr14	59300656	59300657	rs8013872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs8013872-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1037	chr14	59334127	59334128	rs4901869	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	14q23.1	intergenic	rs4901869-?	0.02	6E-6				Affymetrix [253903]	N
1037	chr14	59366314	59366315	rs405460	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.1	LOC440181	rs405460-A	0.418	6E-7	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1037	chr14	59372614	59372614	rs562161427	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q23.1	DACT1	rs562161427-G	0.975866	5E-8	(-348 ms)	0.110001	[0.071-0.149] unit increase	Affymetrix [10000000] (imputed)	N
1038	chr14	59461016	59461017	rs10047930	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	3,566 European ancestry individuals	4,680 European ancestry individuals	14q23.1		rs10047930-T	0.450369738	2E-8				Illumina [7417619] (imputed)	N
1038	chr14	59471070	59471071	rs68136176	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q23.1	NR	rs68136176-?		7E-6				Illumina [4322238] (imputed)	N
1038	chr14	59491211	59491212	rs10132018	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs10132018-?	NR	3E-11	(left pericalcarine)			NR [9227495] (imputed)	N
1038	chr14	59491395	59491396	rs6573235	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q23.1	NR	rs6573235-?		9E-7				Illumina [4322238] (imputed)	N
1038	chr14	59492186	59492187	rs6573237	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q23.1	NR	rs6573237-?	NR	6E-6		4.52	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1038	chr14	59492186	59492187	rs6573237	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.1	DACT1	rs6573237-?	NR	2E-7	(argininosuccinate)	0.90234065	[0.56-1.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1038	chr14	59504085	59504086	rs7149404	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q23.1	NR	rs7149404-?		7E-6				Illumina [4322238] (imputed)	N
1038	chr14	59505486	59505487	rs61975075	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q23.1	DAAM1	rs61975075-A	0.94	2E-14		0.03	unit increase	Affymetrix [8928767] (imputed)	N
1039	chr14	59519757	59519758	rs35285683	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q23.1	DAAM1	rs35285683-A	0.85	2E-12		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1039	chr14	59544616	59544617	rs932539	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (crow's feet)	6,254 Latin American individuals	NA	14q23.1		rs932539-T	NR	4E-8	(men)	0.1	unit increase	Illumina [8703729] (imputed)	N
1039	chr14	59578877	59578878	rs78601235	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs78601235-?	NR	4E-9	(left pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59591081	59591082	rs17833704	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17833704-?	NR	5E-10	(right cuneus)			NR [9227495] (imputed)	N
1039	chr14	59591081	59591082	rs17833704	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17833704-?	NR	4E-17	(left pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59591081	59591082	rs17833704	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17833704-?	NR	2E-8	(right pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59591081	59591082	rs17833704	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17833704-?	NR	2E-12	(left cuneus)			NR [9227495] (imputed)	N
1039	chr14	59598285	59598286	rs7143623	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs7143623-A	0.617	6E-10	(Precuneus)	14.017878	[9.58-18.46] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59598397	59598398	rs7144754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q23.1		rs7144754-C	NR	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1039	chr14	59605115	59605116	rs117461235	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs117461235-A	0.1283	2E-16	(Cuneus)	0.007306721	[0.0056-0.009] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59605115	59605116	rs117461235	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs117461235-A	0.1279	5E-12	(Pericalcarine)	0.005713818	[0.0041-0.0073] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59609281	59609282	rs4258526	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs4258526-?	NR	9E-9	(left pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59620968	59620969	rs17833740	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Parkinsonism in frontotemporal lobe dementia	184 European ancestry cases, 198 European ancestry controls	NA	14q23.1	DAAM1	rs17833740-T	0.29	9E-6		2.17	[1.84-2.50]	Illumina [7033776] (imputed)	N
1039	chr14	59621079	59621080	rs17833752	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	14q23.1	COL11A1	rs17833752-?		5E-17				NR [7428630] (imputed)	N
1039	chr14	59622766	59622767	rs76119478	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	CTD-2315A10.2	rs76119478-?	NR	9E-9	(EA)	0.176	[0.12-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59622766	59622767	rs76119478	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs76119478-?	NR	4E-8	(left inferior parietal)			NR [9227495] (imputed)	N
1039	chr14	59622766	59622767	rs76119478	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs76119478-?	NR	4E-11	(left pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59624316	59624317	rs4901904	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs4901904-?		3E-23	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625979	59625980	rs11158250	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	CTD-2315A10.1	rs11158250-?	NR	6E-18	(EA)	0.1414	[0.11-0.17] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625979	59625980	rs11158250	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs11158250-?	NR	7E-9	(left inferior parietal)			NR [9227495] (imputed)	N
1039	chr14	59625979	59625980	rs11158250	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs11158250-?	NR	2E-9	(left cuneus)			NR [9227495] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	14q23.1		rs73313052-A	0.13	7E-14				NR [13131314] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q23.1		rs73313052-A	0.13	5E-324				Affymetrix [9061022] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs73313052-?		5E-43	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs73313052-?		1E-20	(Lingual)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs73313052-?		3E-43	(Cuneus)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	CTD-2315A10.1	rs73313052-?	NR	2E-34		0.2388	[0.2-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59625996	59625997	rs73313052	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs73313052-A	0.1259	6E-36	(Pericalcarine)	19.574673	[16.51-22.64] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59625996	59625997	rs73313052	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs73313052-A	0.1259	2E-28	(Cuneus)	15.09496	[12.42-17.77] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59625996	59625997	rs73313052	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs73313052-A	0.1256	2E-36	(Precuneus)	42.22891	[35.66-48.8] unit increase	Affymetrix, Illumina [NR]	N
1039	chr14	59625996	59625997	rs73313052	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs73313052-?	NR	3E-13	(right cuneus)			NR [9227495] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs2164950-?		7E-16	(Lateral occipital)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs2164950-?		4E-20	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs2164950-?		3E-26	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs2164950-?		2E-38	(Lateral occipital)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	14q23.1	VIT, AC007382.1, STRN, HEATR5B	rs2164950-?		6E-31				NR [7428630] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	14q23.1	NR	rs2164950-?		4E-30				NR [7428630] (imputed)	N
1039	chr14	59627630	59627631	rs2164950	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs2164950-A	0.1232	1E-25	(Supramarginal)	38.303955	[31.13-45.48] unit increase	Affymetrix, Illumina [NR]	N
1039	chr14	59627630	59627631	rs2164950	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs2164950-?	NR	3E-9	(left lingual)			NR [9227495] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	14q23.1		rs74826997-C	0.13	6E-17				NR [13131314] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q23.1		rs74826997-C	0.13	2E-167		27.58	z score increase	Affymetrix [9061022] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	14q23.1		rs74826997-C	0.13	2E-18				NR [13131314] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	14q23.1		rs74826997-C	0.13	3E-12				Affymetrix [9061022] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q23.1		rs74826997-C	0.13	9E-205		30.54	z score increase	Affymetrix [9061022] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q23.1	NR	rs74826997-C	0.1227	1E-17				NR [9056863] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q23.1	NR	rs74826997-C	0.1227	1E-17				NR [9056863] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	14q23.1		rs74826997-?	NR	1E-71				NR [9705931] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs74826997-?		5E-20	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs74826997-?		5E-40	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	DAAM1, GPR135, L3HYPDH, JKAMP, CCDC175	rs74826997-?		1E-76				NR [7428630] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs74826997-?	NR	6E-13	(right precuneus)			NR [9227495] (imputed)	N
1039	chr14	59628608	59628609	rs74826997	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs74826997-?	NR	5E-11	(left inferior parietal)			NR [9227495] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs76341705-?		1E-29	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs76341705-?		3E-41	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	14q23.1	DAAM1	rs76341705-?		1E-30	(Lingual)			Affymetrix, Illumina [NR] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	NR	rs76341705-?		7E-33				NR [7428630] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	ADAMTS3	rs76341705-?		1E-69				NR [7428630] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs76341705-A	0.1235	8E-32	(Lateral Occipital)	47.53556	[39.6-55.47] unit decrease	Affymetrix, Illumina [NR]	N
1039	chr14	59628678	59628679	rs76341705	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs76341705-?	NR	5E-9	(left lateral occipital)			NR [9227495] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs76341705-?	NR	5E-29	(left pericalcarine)			NR [9227495] (imputed)	N
1039	chr14	59628678	59628679	rs76341705	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs76341705-?	NR	1E-16	(left cuneus)			NR [9227495] (imputed)	N
1039	chr14	59631074	59631077	rs201816193	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	14q23.1	DAAM1	rs201816193-G	0.12	4E-10				NR [9312144] (imputed)	N
1039	chr14	59631075	59631079	rs147148763	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Parietal lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	14q23.1	DACT1, DAAM1	rs147148763-G	0.127	2E-6		0.914	[0.53-1.29] cm3 increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1039	chr14	59631075	59631079	rs147148763	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	14q23.1	DACT1, DAAM1	rs147148763-G	0.128	3E-9		0.847	[0.57-1.13] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1039	chr14	59631075	59631079	rs147148763	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals	8,789 European ancestry individuals	14q23.1	DAAM1	rs147148763-G	0.13	7E-9		0.83	[0.56-1.1] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1039	chr14	59636408	59636409	rs1252914	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs1252914-?	NR	1E-8	(left cuneus)			NR [9227495] (imputed)	N
1039	chr14	59636408	59636409	rs1252914	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs1252914-?	NR	1E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1040	chr14	59648737	59648738	rs893516	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	CTD-2315A10.1	rs893516-?	NR	1E-21	(EA)	0.1354	[0.11-0.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1040	chr14	59658724	59658725	rs11844752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs11844752-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1040	chr14	59658859	59658860	rs55760851	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs55760851-?	NR	4E-8	(left cuneus)			NR [9227495] (imputed)	N
1040	chr14	59665285	59665286	rs1252992	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs1252992-?	NR	1E-9	(left pericalcarine)			NR [9227495] (imputed)	N
1040	chr14	59681379	59681380	rs79009632	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs79009632-?	NR	5E-15	(left pericalcarine)			NR [9227495] (imputed)	N
1040	chr14	59683085	59683086	rs78445564	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs78445564-T	0.9601	2E-12	(Lateral Occipital)	48.15231	[34.75-61.55] unit increase	Affymetrix, Illumina [NR]	N
1040	chr14	59684858	59684859	rs74874233	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	DAAM1	rs74874233-?	NR	4E-14	(EA)	0.1817	[0.13-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1040	chr14	59689942	59689943	rs2099637	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs2099637-?	NR	3E-8	(right pericalcarine)			NR [9227495] (imputed)	N
1040	chr14	59694642	59694643	rs2757117	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA		NR	rs2757117-?	NR	2E-9	(left pericalcarine)			NR [9227495] (imputed)	N
1040	chr14	59709312	59709313	rs144053467	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs144053467-?	NR	1E-9	(right precuneus)			NR [9227495] (imputed)	N
1040	chr14	59719392	59719393	rs17095953	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	14q23.1	NR	rs17095953-A	0.24	2E-10		0.28	[0.2-0.36] unit decrease	Affymetrix [9231066] (imputed)	N
1040	chr14	59719392	59719393	rs17095953	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	14q23.1	NR	rs17095953-A	0.24	2E-10		0.28	[0.2-0.36] unit decrease	Affymetrix [9231066] (imputed)	N
1040	chr14	59751829	59751830	rs35209784	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	14q23.1	DAAM1	rs35209784-T	0.01	5E-6		3.57	[1.92-6.25]	Illumina [5891794] (imputed)	N
1041	chr14	59800035	59800036	rs17096107	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17096107-?	NR	2E-8	(left precuneus)			NR [9227495] (imputed)	N
1041	chr14	59800320	59800321	rs1957408	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	14q23.1	NR	rs1957408-G	0.491191	2E-6		1.148	[1.09-1.21]	Affymetrix [7791636] (imputed)	N
1041	chr14	59801713	59801714	rs61984497	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs61984497-?	NR	2E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1041	chr14	59805479	59805480	rs75341124	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs75341124-T	0.0373	3E-12	(Pericalcarine)	19.28508	[13.86-24.71] unit decrease	Affymetrix, Illumina [NR]	N
1041	chr14	59814031	59814031	rs3830987	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q23.1		rs3830987-?	NR	3E-9				NR [9705931] (imputed)	N
1041	chr14	59815039	59815040	rs755011	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q23.1	DAAM1	rs755011-?		2E-6				Illumina [4322238] (imputed)	N
1041	chr14	59815096	59815097	rs61984499	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	14q23.1	DAAM1	rs61984499-?	NR	9E-10	(EA)	0.1418	[0.097-0.187] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1041	chr14	59816025	59816026	rs17834014	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs17834014-?	NR	8E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1041	chr14	59827305	59827306	rs17834032	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs17834032-T	0.5193	3E-12	(Fusiform)	12.593433	[9.05-16.13] unit increase	Affymetrix, Illumina [NR]	N
1041	chr14	59833171	59833172	rs1547199	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	14q23.1	DAAM1	rs1547199-?		5E-10	(Fusiform)			Affymetrix, Illumina [NR] (imputed)	N
1041	chr14	59836638	59836639	rs117932605	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q23.1	DAAM1	rs117932605-T	0.0191616630670451	6E-6	(G_Bifidobacterium_RNT)	0.448125	[0.25-0.64] unit decrease	Illumina [7711310] (imputed)	N
1041	chr14	59860704	59860705	rs7141150	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	14q23.1	NR	rs7141150-A	0.5199	1E-8	(Entorhinal)	1.8628767	[1.22-2.51] unit increase	Affymetrix, Illumina [NR]	N
1041	chr14	59885428	59885429	rs78547615	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	14q23.1	NR	rs78547615-G	0.95	2E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
1042	chr14	59907091	59907092	rs1755715	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	14q23.1	GPR135	rs1755715-?		9E-7	(female)	0.235	[0.14-0.33] unit decrease	NR [~ 5500000] (imputed)	N
1042	chr14	59913497	59913498	rs111541756	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs111541756-?	NR	9E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1042	chr14	59913510	59913511	rs10142337	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q23.1	NR	rs10142337-?	NR	8E-10	(left pericalcarine)			NR [9227495] (imputed)	N
1042	chr14	59913626	59913627	rs7143268	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q23.1		rs7143268-A	0.625	4E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1042	chr14	59965292	59965293	rs111803315	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q23.1	NR	rs111803315-G	NR	3E-6		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1042	chr14	59990473	59990474	rs10147008	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q23.1	NR	rs10147008-?	NR	1E-6		0.0439	[0.026-0.062] unit increase	Illumina [at least 560000] (imputed)	N
1043	chr14	60045596	60045597	rs34486957	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	14q23.1	CCDC175	rs34486957-?	NR	4E-7	(African)			Illumina [4404269] (imputed)	N
1043	chr14	60088614	60088615	rs1950781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs1950781-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1043	chr14	60099999	60100000	rs117332812	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	14q23.1	NR	rs117332812-?	NR	5E-6		0.597671	[0.34-0.86] unit increase	NR [13958389] (imputed)	N
1043	chr14	60112114	60112115	rs2349697	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Putamen volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q23.1	RTN1	rs2349697-?		5E-7				Illumina [4322238] (imputed)	N
1043	chr14	60141542	60141543	rs1956351	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	14q23.1	NR	rs1956351-?	NR	9E-8				NR [NR] (imputed)	N
1043	chr14	60141821	60141822	rs1956373	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	14q23.1	NR	rs1956373-G	0.2564	6E-12		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
1043	chr14	60149232	60149233	rs2182139	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	14q23.1	RTN1	rs2182139-T	0.75	8E-10				Affymetrix, Illumina [at least 918921] (imputed)	N
1043	chr14	60156692	60156693	rs12894153	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q23.1	RTN1	rs12894153-?		2E-8				NR [6786993] (imputed)	N
1044	chr14	60165069	60165070	rs4243617	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q23.1	NR	rs4243617-?	NR	6E-9		1.05432	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1044	chr14	60166021	60166022	rs12431410	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q23.1	RTN1	rs12431410-C	NR	8E-8		1.0548522	[1.04-1.07]	Illumina [6627481] (imputed)	N
1044	chr14	60166021	60166022	rs12431410	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q23.1	RTN1	rs12431410-C	NR	3E-6	(EA)	1.0539628	[1.03-1.08]	Illumina [6627481] (imputed)	N
1044	chr14	60166021	60166022	rs12431410	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q23.1	intergenic	rs12431410-C	NR	5E-7		1.0504202	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1044	chr14	60166021	60166022	rs12431410	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q23.1	NR	rs12431410-C	NR	6E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1044	chr14	60233840	60233841	rs61985058	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	14q23.1	NR	rs61985058-T	NR	2E-7		0.936	unit increase	Affymetrix [14661600] (imputed)	N
1044	chr14	60280824	60280825	rs150380031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs150380031-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1045	chr14	60363126	60363127	rs17256010	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q23.1	NR	rs17256010-?	NR	1E-7		5.324	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1046	chr14	60507311	60507312	rs11158274	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q23.1	NR	rs11158274-?	NR	2E-6		4.781	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1046	chr14	60538028	60538029	rs460452	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	14q23.1		rs460452-A	0.07224	8E-6		1.477	[1.245-1.75199999999999]	Affymetrix [7975321] (imputed)	N
1047	chr14	60558678	60558679	rs113053299	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q23.1	PCNX4	rs113053299-A	0.0467	4E-11		0.0301	[0.021-0.039] unit increase	Affymetrix [18391927] (imputed)	N
1047	chr14	60559238	60559239	rs79076914	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Disease-related mortality after unrelated donor allogeneic hematopoietic cell transplantation (donor effect)	2,799 European ancestry donors	NA	14q23.1		rs79076914-T	0.051	3E-8		1.6991022	[1.4082277515259494-2.0500578248573755]	Illumina [8515276] (imputed)	N
1047	chr14	60608353	60608358	rs148725355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q23.1		rs148725355-T	NR	7E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1047	chr14	60624160	60624161	rs77587000	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q23.1	DHRS7	rs77587000-T	0.01	3E-27		0.09	unit decrease	Affymetrix [8928767] (imputed)	N
1047	chr14	60642969	60642970	rs216531	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q23.1	NR	rs216531-?	NR	4E-7		5.082	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1047	chr14	60660733	60660734	rs12147505	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q23.1	NR	rs12147505-T		2E-9		0.29	[0.19-0.39] unit increase	NR [NR]	N
1047	chr14	60683429	60683430	rs216518	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	14q23.1	PPM1A, DHRS7	rs216518-A	0.15	2E-6		1.21	[1.12-1.31]	Affymetrix, Illumina [2217510] (imputed)	N
1048	chr14	60686466	60686467	rs216517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q23.1		rs216517-C	NR	2E-8		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1048	chr14	60690630	60690631	rs7150940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q23.1		rs7150940-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1048	chr14	60700902	60700903	rs11628933	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q23.1	PPM1A	rs11628933-C	0.2321	7E-14		0.1338	[0.099-0.169] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1048	chr14	60703988	60703989	rs7160041	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	14q23.1		rs7160041-T	0.06514	4E-6		1.51	[1.268-1.799]	Affymetrix [7975321] (imputed)	N
1048	chr14	60743218	60743219	rs1887103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q23.1		rs1887103-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1048	chr14	60743218	60743219	rs1887103	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q23.1	PPM1A	rs1887103-G	0.3564	1E-12		1.059	NR	Affymetrix [9154080] (imputed)	N
1048	chr14	60770696	60770696	rs34813910	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	14q23.1	PPM1A	rs34813910-D	0.351	3E-18		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1048	chr14	60789175	60789176	rs4901977	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	14q23.1	SIX6	rs4901977-T	0.309	3E-16		0.012	[0.01-0.014] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1048	chr14	60789175	60789176	rs4901977	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	14q23.1	SIX1, SIX6	rs4901977-T	NR	2E-16		0.011	[0.0090-0.0130] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1048	chr14	60792102	60792103	rs2350892	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q23.1	NR	rs2350892-G	0.382941	1E-12		0.014464	[0.01-0.019] unit increase	Affymetrix [16583148] (imputed)	N
1048	chr14	60798008	60798009	rs6573307	29452408	Shiga Y	2018-02-14	Hum Mol Genet	Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,980 Japanese ancestry cases, 18,815 Japanese ancestry controls	4,406 East Asian ancestry cases, 18,161 East Asian ancestry controls, 5,008 European ancestry cases, 35,472 European ancestry controls, 769 African American cases, 663 African American controls, 1,572 Sub-Saharan African ancestry cases, 1,374 Sub-Saharan African ancestry controls.	14q23.1	SIX6	rs6573307-G	0.73	2E-11	(Japanese discovery)	1.23	[1.16-1.30]	Illumina [6109376] (imputed)	N
1048	chr14	60806758	60806759	rs7493429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	CTD-2568P8.1	rs7493429-C	NR	3E-9		0.0183395	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1048	chr14	60806758	60806759	rs7493429	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q23.1	PPM1A, C14orf39	rs7493429-A	0.7	1E-35		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1048	chr14	60806867	60806868	rs12050359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q23.1	NR	rs12050359-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1048	chr14	60806975	60806976	rs6573308	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	14q23.1	SIX6	rs6573308-T	0.403	2E-24		0.023	[0.019-0.027] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1048	chr14	60806975	60806976	rs6573308	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q23.1	PPM1A, C14orf39	rs6573308-T	0.3941	1E-8		1.0251101		Affymetrix [11880941] (imputed)	N
1048	chr14	60808001	60808002	rs4436712	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	14q23.1	SIX6	rs4436712-T	NR	2E-29		0.025	[0.021-0.029] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1048	chr14	60808001	60808002	rs4436712	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	14q23.1	SIX6	rs4436712-T	NR	1E-19	(EA)	0.023	[0.017-0.029] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1048	chr14	60808552	60808553	rs10162287	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q23.1	PPM1A	rs10162287-C	0.7	4E-25		0.00999	[0.0081-0.0119] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1048	chr14	60808552	60808553	rs10162287	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q23.1	LINC02322, C14orf39	rs10162287-?	NR	3E-12		0.5155	[0.37-0.66] unit increase	Affymetrix [11100000] (imputed)	N
1048	chr14	60811203	60811204	rs7146988	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q23.1	CTD-2568P8.1	rs7146988-A	0.8912	8E-6		0.0455	[0.026-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1048	chr14	60811998	60811999	rs8015152	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	14q23.1	SIX6	rs8015152-T	NR	3E-18		0.01	[0.008-0.012] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1048	chr14	60811998	60811999	rs8015152	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	14q23.1	SIX6	rs8015152-T	NR	3E-13	(EA)	0.01	[0.008-0.012] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1049	chr14	60832178	60832179	rs1254257	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q23.1	PPM1A	rs1254257-T	0.7108	9E-10	(EA)	0.0294	[0.02-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1049	chr14	60832178	60832179	rs1254257	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q23.1	PPM1A	rs1254257-T	0.7108	7E-9	(EA, women)	0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	14q23.1	NR	rs1254276-T	0.39	8E-14		0.28	[0.2-0.36] unit decrease	Affymetrix [9231066] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	14q23.1	NR	rs1254276-T	0.39	8E-14		0.28	[0.2-0.36] unit decrease	Affymetrix [9231066] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	14q23.1	PPM1A-C14orf39	rs1254276-T	NR	1E-18		1.24508	[1.2-1.29]	Illumina [11610548] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q23.1	NR	rs1254276-T	0.390132	1E-8		0.0392656	[0.026-0.053] unit increase	Affymetrix [17914406] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q23.1	C14orf39	rs1254276-T	0.4056	4E-14		0.0492	[0.036-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1049	chr14	60847000	60847001	rs1254276	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		14q23.1	NR	rs1254276-T		2E-9				Affymetrix, Illumina [6425680] (imputed)	N
1049	chr14	60850702	60850703	rs2753462	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q23.1	JB175233, C14orf39	rs2753462-C	0.2955	8E-11		6.494	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1049	chr14	60850702	60850703	rs2753462	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q23.1	NR	rs2753462-C	0.3121	2E-9		0.0948	[0.064-0.126] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1049	chr14	60850702	60850703	rs2753462	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	14q23.1	SIX6	rs2753462-C	0.29	4E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
1049	chr14	60850702	60850703	rs2753462	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	14q23.1	SIX6	rs2753462-C	0.26	4E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1049	chr14	60858760	60858761	rs986417	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	14q23.1	SIX6, C14orf39, SIX1	rs986417-C	NR	3E-9	(Unclassified Acidaminococcaceae)	1.4	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1049	chr14	60883841	60883842	rs1254298	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	14q23.1	LYPD6B	rs1254298-?		3E-8				NR [7428630] (imputed)	N
1049	chr14	60884439	60884440	rs1254299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q23.1	Intergenic	rs1254299-A	0.2961	1E-10	(MTAG)	0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q23.1		rs1272131-C	NR	3E-87		0.0275	[0.025-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	14q23.1		rs1272131-C	0.768334627	4E-9		0.11519705	[0.077-0.154] unit increase	Illumina [13429686] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	14q23.1	NR	rs1272131-C	0.386695	1E-17		0.0267642	[0.021-0.033] unit increase	Affymetrix [16577424] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q23.1	C14orf39	rs1272131-T	0.614264	4E-18		0.0166516	[0.013-0.02] unit decrease	NR [13737936] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q23.1		rs1272131-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1049	chr14	60886149	60886150	rs1272131	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	14q23.1	C14orf39	rs1272131-T	0.5988	4E-6		0.0382	[0.022-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1049	chr14	60887899	60887900	rs1254306	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q23.1	Intergenic	rs1254306-C	0.704	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1049	chr14	60890421	60890422	rs1254309	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	14q23.1	PPM1A, C14orf39	rs1254309-?	NR	1E-12		0.038	[0.028-0.049] unit increase	Illumina [12039492]	N
1049	chr14	60896433	60896434	rs1254314	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q23.1	PPM1A, SIX6, SIX1, SIX4, MNAT1, SLC38A6	rs1254314-?		2E-40				Affymetrix, Illumina [NR] (imputed)	N
1049	chr14	60901423	60901423	rs565408205	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	14q23.1	NR	rs565408205-AT	0.25471	3E-8		0.0625461	[0.04-0.085] unit increase	Affymetrix [21375087] (imputed)	N
1049	chr14	60903756	60903757	rs1254319	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	14q23.1	NR	rs1254319-?	NR	7E-8		0.104659	[0.067-0.143] unit decrease	NR [13958389] (imputed)	N
1049	chr14	60903756	60903757	rs1254319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q23.1		rs1254319-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1049	chr14	60903756	60903757	rs1254319	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	14q23.1	SIX6	rs1254319-A	0.32	1E-8		0.088	[0.059-0.117] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1049	chr14	60920524	60920525	rs1254337	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	14q23.1	SIX6	rs1254337-T	0.31	2E-16		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1049	chr14	60921296	60921297	rs76053977	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs76053977-T	0.01045	5E-11	(ACSL4)	0.1301	NR unit increase	Illumina [1671387] (imputed)	N
1049	chr14	60944848	60944849	rs10130568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	C14orf39	rs10130568-A	NR	5E-12		0.0324536	[0.023-0.042] unit increase	Affymetrix [321016] (imputed)	N
1049	chr14	60948127	60948128	rs2350901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	C14orf39	rs2350901-A	NR	1E-14		0.0327977	[0.024-0.041] unit increase	Affymetrix [321016] (imputed)	N
1050	chr14	60952611	60952612	rs8020587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q23.1		rs8020587-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	14q23.1	C14orf39	rs2093210-T	NR	2E-23		0.847978	[0.82-0.88]	Illumina [NR] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	14q23.1	C14orf39	rs2093210-T	NR	7E-28		0.837864	[0.81-0.87]	Illumina [NR] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	14q23.1	C14orf39	rs2093210-T	NR	1E-24		0.72644	[0.67-0.79]	Illumina [NR] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	14q23.1	C14orf39	rs2093210-T	NR	5E-14		0.822588	[0.77-0.87]	Illumina [NR] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	14q23.1	NR	rs2093210-?	NR	8E-7		0.03315757	[0.02-0.046] unit decrease	Illumina [34656550] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	14q23.1	C14orf39, SIX6	rs2093210-T	NR	6E-22		1.1627907	[1.11-1.2]	Affymetrix [up to 40000000] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q23.1	Intergenic	rs2093210-T	0.589	5E-15	(MTAG)	0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	14q23.1	SIX6	rs2093210-T	0.25	2E-7		0.025	[0.011-0.039] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	14q23.1	C14orf39	rs2093210-T	0.581	3E-35		0.039	[0.033-0.045] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	14q23.1	C14orf39	rs2093210-C	0.42	8E-13		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1050	chr14	60957278	60957279	rs2093210	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q23.1	SIX6	rs2093210-T	0.58	6E-17		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1050	chr14	60963047	60963048	rs117594974	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs117594974-T	0.02265	1E-8	(IGHA2)	0.4998	NR unit increase	Illumina [1671387] (imputed)	N
1050	chr14	60976500	60976501	rs146737847	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q23.1	NR	rs146737847-?	NR	1E-7		0.714326	[0.45-0.98] unit increase	NR [13958389] (imputed)	N
1050	chr14	60976500	60976501	rs146737847	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	14q23.1	NR	rs146737847-?	NR	1E-7		0.693692	[0.44-0.95] unit increase	NR [13958389] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	14q23.1		rs33912345-A	NR	5E-18		0.1306	[0.1-0.16] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	14q23.1	SIX6	rs33912345-A	NR	3E-18		0.805735	[0.76-0.85]	Illumina [11610548] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	14q23.1	SIX6	rs33912345-A	NR	3E-54		0.113	unit decrease	Illumina [15409056] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	14q23.1	SIX6	rs33912345-A	NR	4E-39		0.841895	[0.82-0.87]	Affymetrix, Illumina [14822926] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q23.1	NR	rs33912345-A	0.609323	8E-9		0.0395088	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	14q23.1	SIX6	rs33912345-C	0.390214	1E-12		0.14568257	[0.11-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs33912345-?	NR	5E-125				NR [~ 8900000] (imputed)	N
1050	chr14	60976536	60976537	rs33912345	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		14q23.1	NR	rs33912345-A		1E-9				Affymetrix, Illumina [6425680] (imputed)	N
1050	chr14	60994212	60994213	rs4365199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q23.1		rs4365199-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1050	chr14	61003888	61003889	rs4899012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	14q23.1		rs4899012-C	NR	2E-18		0.1063	[0.083-0.13] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1050	chr14	61003888	61003889	rs4899012	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	14q23.1		rs4899012-C	0.229367743	2E-8		0.8793193	[0.840867093-0.919529934]	Illumina [8919992] (imputed)	N
1050	chr14	61003888	61003889	rs4899012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.1		rs4899012-C	0.6019	8E-13		0.0103	[0.0076-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1050	chr14	61003888	61003889	rs4899012	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.1	Intergenic	rs4899012-C	0.6019	6E-15	(MTAG)	0.0104	[0.0079-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr14	61005624	61005625	rs1010053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.1		rs1010053-A	0.7	6E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1050	chr14	61021890	61021891	rs1955695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q23.1		rs1955695-G	NR	2E-37		0.0228	[0.019-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1050	chr14	61025616	61025617	rs4442732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q23.1	RP11-1042B17.3	rs4442732-A	NR	1E-8		0.018135	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1050	chr14	61025616	61025617	rs4442732	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	14q23.1	SIX6	rs4442732-A	0.377013	1E-9	(EA)	0.00779507	[0.0053-0.0103] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1050	chr14	61025616	61025617	rs4442732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q23.1	Intergenic	rs4442732-A	0.3803	2E-8	(MTAG)	0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr14	61029935	61029936	rs1955698	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q23.1		rs1955698-C	0.09	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
1050	chr14	61029935	61029936	rs1955698	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q23.1	NR	rs1955698-C	0.0993	2E-12				NR [9056863] (imputed)	N
1050	chr14	61050396	61050397	rs11844841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	RP11-1042B17.1	rs11844841-C	NR	2E-11		0.0282785	[0.02-0.037] unit increase	Affymetrix [321016] (imputed)	N
1050	chr14	61059152	61059153	rs7156107	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	14q23.1	NR	rs7156107-G	0.1	9E-10		0.05	[0.034-0.066] unit increase	NR [9704453]	N
1050	chr14	61059152	61059153	rs7156107	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	14q23.1	NR	rs7156107-G	0.1	7E-9		0.03	[0.018-0.042] unit increase	NR [9704453]	N
1050	chr14	61072657	61072658	rs28711886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q23.1	U3	rs28711886-G	NR	5E-9		0.0179509	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1050	chr14	61072657	61072658	rs28711886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q23.1	U3	rs28711886-G	NR	3E-8		0.0169192	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1050	chr14	61072657	61072658	rs28711886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	U3	rs28711886-G	NR	3E-22		0.0296938	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1050	chr14	61072657	61072658	rs28711886	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q23.1	NR	rs28711886-A		5E-18		0.1	[0.08-0.12] unit increase	NR [NR]	N
1050	chr14	61072657	61072658	rs28711886	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q23.1		rs28711886-?	NR	1E-19		0.0205435	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q23.1	AL049874.1	rs10483727-T	0.3891	7E-80		0.0368	[0.033-0.041] unit increase	Affymetrix [18391927] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q23.1	SIX1	rs10483727-T	0.39	3E-21		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	1,868 European ancestry cases, 31,497 European ancestry controls		14q23.1	NR	rs10483727-T		2E-9				Affymetrix, Illumina [6425680] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	14q23.1	SIX6	rs10483727-T	0.40	1E-7		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	14q23.1	SIX6	rs10483727-T	0.4	4E-17	(EA)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	14q23.1	SIX6	rs10483727-T	0.4	2E-27		0.026	[0.022-0.030] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	14q23.1	SIX6	rs10483727-T	NR	2E-17		1.32	[1.26-1.38]	Illumina [7594768] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	22570617	Wiggs JL	2012-04-26	PLoS Genet	Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.	Glaucoma (primary open-angle)	3,146 European ancestry cases, 3,487 European ancestry controls	NA	14q23.1	SIX6, SIX1	rs10483727-A	NR	4E-11		1.32	[1.21-1.43]	Illumina [495132] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	22419738	Osman W	2012-03-22	Hum Mol Genet	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	14q23.1	SIX6, SIX1	rs10483727-T	0.768	9E-8		1.27	[1.18-1.37]	Illumina [602216]	N
1050	chr14	61072874	61072875	rs10483727	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	14q23.1	SIX1	rs10483727-T	0.41	1E-11		0.01	[0.008-0.016] mm2 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1050	chr14	61072874	61072875	rs10483727	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q23.1	SIX1	rs10483727-C	NR	9E-6		0.151	[0.063-0.239] unit increase	Illumina [~ 2740000] (imputed)	N
1051	chr14	61091400	61091401	rs34935520	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	14q23.1	SIX6-SALRNA1	rs34935520-A	NR	7E-24		0.846623	[0.81-0.88]	Illumina [NR] (imputed)	N
1051	chr14	61091400	61091401	rs34935520	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	14q23.1	SIX6-SALRNA1	rs34935520-A	NR	2E-27		0.839037	[0.81-0.87]	Illumina [NR] (imputed)	N
1051	chr14	61091400	61091401	rs34935520	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	14q23.1	SIX1, SIX6	rs34935520-G		4E-13		1.14	1.10-1.17	NR [NR] (imputed)	N
1051	chr14	61091400	61091401	rs34935520	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	14q23.1	SIX1, SIX6	rs34935520-G	NR	8E-24		1.15	1.12-1.18	Affymetrix [at least 665500] (imputed)	N
1051	chr14	61091400	61091401	rs34935520	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	14q23.1	SIX6	rs34935520-G		3E-8		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1051	chr14	61094365	61094365	rs140218129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q23.1	NR	rs140218129-T	0.138962	4E-8		0.0254272	[0.016-0.035] unit increase	Affymetrix [16577313] (imputed)	N
1051	chr14	61095173	61095174	rs35155027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q23.1		rs35155027-C	0.230775	1E-20		0.02245	[0.018-0.027] unit decrease	Illumina [13479295] (imputed)	N
1051	chr14	61095173	61095174	rs35155027	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	14q23.1	SIX1	rs35155027-G	0.39	6E-17		1.09	NR	Affymetrix, Illumina [8002429] (imputed)	N
1051	chr14	61095173	61095174	rs35155027	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	14q23.1	SIX1	rs35155027-G	0.39	6E-12		1.12	NR	Affymetrix [at least 8002429] (imputed)	N
1051	chr14	61095173	61095174	rs35155027	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	14q23.1	SIX1, SIX6	rs35155027-G		6E-13		1.13	[1.10-1.17]	Affymetrix [at least 665500] (imputed)	N
1051	chr14	61104737	61104738	rs8014133	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q23.1		rs8014133-?	NR	3E-16		0.0279732	[0.021-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1051	chr14	61105735	61105736	rs3783820	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	14q23.1	NR	rs3783820-T	0.225578	5E-8		0.0647671	[0.042-0.088] unit increase	Affymetrix [21375087] (imputed)	N
1051	chr14	61106698	61106699	rs8005621	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q23.1	NR	rs8005621-G	NR	6E-12		1.071	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	14q23.1		rs35320790-A	0.223896	3E-15		0.0259882	[0.02-0.032] unit decrease	Illumina [13479924] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q23.1	NR	rs35320790-?	NR	8E-10		0.127663	[0.087-0.168] unit increase	NR [13958389] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q23.1	NR	rs35320790-A	0.600948	9E-9		0.0390648	[0.025-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q23.1	SALRNA1, SIX1	rs35320790-?	NR	2E-25		0.03612164	[0.029-0.043] unit decrease	Illumina [27896057] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q23.1	NR	rs35320790-?	NR	8E-11	(female)	0.15977	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q23.1	NR	rs35320790-?	NR	2E-22		0.21865	[0.17-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
1051	chr14	61108824	61108825	rs35320790	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q23.1	NR	rs35320790-?	NR	1E-13	(male)	0.26441	[0.19-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
1051	chr14	61122525	61122526	rs7153648	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	14q23.1	SIX1	rs7153648-C	0.06	2E-9		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1051	chr14	61139116	61139117	rs61991661	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q23.1	SIX1	rs61991661-G	NR	6E-9		0.0193679	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
1051	chr14	61151424	61151425	rs140706189	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Exhaled carbon monoxide levels in smokers with chronic obstructive pulmonary disease	2,706 European ancestry individuals	NA	14q23.1	SIX1, SIX4, SIX6, MNAT1	rs140706189-?	NR	6E-8		0.49	[0.31-0.67] unit decrease	Illumina [7807992] (imputed)	N
1051	chr14	61160526	61160527	rs9671845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q23.1		rs9671845-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1051	chr14	61178278	61178279	rs11158303	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q23.1	SIX4	rs11158303-?	NR	2E-10		0.019888155	[0.014-0.026] unit decrease	Illumina [27896057] (imputed)	N
1052	chr14	61229410	61229411	rs4902002	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q23.1	NR	rs4902002-G	0.3474	1E-9		0.0246	[0.017-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1052	chr14	61238780	61238781	rs12147818	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	14q23.1	SIX6	rs12147818-A	0.007	3E-12		0.187	[0.13-0.24] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
1052	chr14	61284402	61284403	rs4151224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.1	NR	rs4151224-A	0.01568	4E-9	(ACSM2B)	1.4	NR unit increase	Illumina [1671387] (imputed)	N
1052	chr14	61308336	61308337	rs6573333	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	14q23.1	MNAT1	rs6573333-A		3E-10	(EA)			Illumina [NR]	N
1052	chr14	61322570	61322571	rs2093251	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	14q23.1	NR	rs2093251-?		3E-6		1.53	[1.28-1.84]	Illumina [539473] (imputed)	N
1053	chr14	61343617	61343618	rs72722286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.1		rs72722286-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1053	chr14	61361094	61361095	rs12888332	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q23.1	MNAT1	rs12888332-G	0.0421478183847017	2E-7	(G_Bifidobacterium_RNT)	0.351173	[0.22-0.48] unit decrease	Illumina [7711310] (imputed)	N
1053	chr14	61377122	61377123	rs61993025	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q23.1	NR	rs61993025-A	0.2831	1E-12				NR [9056863] (imputed)	N
1053	chr14	61421131	61421132	rs11158314	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	14q23.1		rs11158314-G	0.307187	5E-7		1.0814	NR	Affymetrix [7846216] (imputed)	N
1053	chr14	61436384	61436385	rs12894381	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	14q23.1	TRMT5	rs12894381-C	NR	2E-6	(adjusted for subcutaneous fat)	0.112	[0.066-0.158] unit increase	Illumina [8511049] (imputed)	N
1053	chr14	61465119	61465120	rs79755914	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	14q23.1	SLC38A6	rs79755914-?	NR	3E-6		6.49	[2.97-14.18]	Illumina [8600000] (imputed)	N
1054	chr14	61486862	61486863	rs10483729	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q23.1		rs10483729-C	0.24	5E-12		6.9	z score increase	Affymetrix [9061022] (imputed)	N
1054	chr14	61530513	61530514	rs145786277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q23.1		rs145786277-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1054	chr14	61536932	61536933	rs12893450	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12893450-C	0.850648	5E-8		0.0703353	[0.045-0.096] increase	Affymetrix [11014269] (imputed)	N
1054	chr14	61558425	61558426	rs71416086	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_physician)	881 Dutch ancestry individuals	246 Dutch ancestry individuals	14q23.1		rs71416086-A	NR	2E-6		0.24794017	[0.15-0.35] decrease	Illumina [6334277] (imputed)	N
1054	chr14	61561843	61561844	rs150138734	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q23.1		rs150138734-?	NR	3E-11		0.0341483	[0.024-0.044] unit increase	Affymetrix [20259828] (imputed)	N
1054	chr14	61564836	61564837	rs12881623	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 18)	3,566 European ancestry individuals	4,680 European ancestry individuals	14q23.1		rs12881623-C	0.309428571	1E-9				Illumina [7417619] (imputed)	N
1054	chr14	61572177	61572178	rs57561811	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	14q23.1	SLC38A6	rs57561811-T	0.74	2E-6		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
1054	chr14	61580073	61580074	rs57576075	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	14q23.1		rs57576075-C	NR	2E-6		0.3	[0.2-0.5]	Illumina [7629332] (imputed)	N
1054	chr14	61595746	61595747	rs79578553	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	Red wine liking	398 Carlantino (founder/genetic isolated) individuals, 751 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,122 Val Borbera (founder/genetic isolated) individuals	1,246 Erasmus Rucphen (founder/genetic isolated) individuals, 353 Silk Road individuals	14q23.1	NR	rs79578553-A	NR	5E-6		0.14	[NR] unit decrease	Illumina [6967159] (imputed)	N
1055	chr14	61607495	61607496	rs764411533	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q23.1	PRKCH	rs764411533-A	0.9957	9E-6		1.2364	[0.69-1.78] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1055	chr14	61699771	61699772	rs17098149	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	14q23.1	TMEM30B	rs17098149-C	0.3476	5E-7		1.514	[1.288-1.781]	Affymetrix, Illumina [14074516] (imputed)	N
1055	chr14	61709783	61709784	rs7149581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q23.1		rs7149581-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1055	chr14	61729492	61729493	rs76788097	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	14q23.1	intergenic	rs76788097-G	0.062	2E-6		1.53	[1.28-1.82]	Illumina [611856]	N
1055	chr14	61734639	61734640	rs7141238	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.1	TMEM30B	rs7141238-C	0.155	3E-6	(Hip circumference change )	0.04	[NR] cm/y increase	Illumina [899892]	N
1056	chr14	61748307	61748308	rs117955567	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_patient)	881 Dutch ancestry individuals	241 Dutch ancestry individuals	14q23.1		rs117955567-C	NR	6E-6		0.39159688	[0.22-0.56] increase	Illumina [6334277] (imputed)	N
1057	chr14	61880527	61880528	rs1536014	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.1	NR	rs1536014-?	NR	3E-19				Affymetrix [NR]	N
1057	chr14	61895044	61895045	rs11158345	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		14q23.1	PRKCH	rs11158345-T	0.82	3E-6		0.084	[0.049-0.119] unit increase	Illumina [~ 2400000] (imputed)	N
1057	chr14	61898838	61898839	rs17098356	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	14q23.1	PRKCH	rs17098356-?	NR	6E-6				Illumina [~ 2400000] (imputed)	N
1057	chr14	61908110	61908111	rs1957894	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	14q23.1	PRKCH	rs1957894-T	0.06	3E-10		1.5	[1.32-1.70]	Affymetrix [~ 2000000] (imputed)	N
1057	chr14	61908331	61908332	rs1957895	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q23.1	PRKCH	rs1957895-G	0.39	4E-7		1.09	[1.05-1.13]	Affymetrix, Illumina [1948139]	N
1057	chr14	61940674	61940675	rs3783782	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q23.1	PRKCH	rs3783782-A	NR	1E-7		0.151127	[0.095-0.207] unit increase	Illumina [8380626] (imputed)	N
1057	chr14	61940674	61940675	rs3783782	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q23.1	PRKCH	rs3783782-A	0.23	1E-7	(East Asian)	0.16062	[0.1-0.22] unit increase	Illumina [8380626] (imputed)	N
1057	chr14	61940674	61940675	rs3783782	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q23.1	PRKCH	rs3783782-A	0.22	4E-9	(East Asian)	1.14	[1.09-1.19]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1057	chr14	61940674	61940675	rs3783782	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q23.1	PRKCH	rs3783782-A	0.09	2E-9		1.14	[1.09-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1057	chr14	61945590	61945591	rs75455100	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	14q23.1	NR	rs75455100-G		2E-6		0.2195	[0.13-0.31] SD units increase	NR [10700000] (imputed)	N
1057	chr14	61983942	61983943	rs3751289	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	14q23.1	PRKCH	rs3751289-G	0.22	2E-8				NR [> 9500000] (imputed)	N
1058	chr14	62003901	62003902	rs1088670	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	14q23.1	NR	rs1088670-?	NR	4E-8	(Lentisphaerae)	0.445148	[0.3-0.59] unit increase	Illumina [5293637] (imputed)	N
1058	chr14	62017843	62017844	rs181293434	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q23.1	Intergenic	rs181293434-T	0.999	3E-6	(AA)	0.282	unit increase	Illumina [NR] (imputed)	N
1058	chr14	62023263	62023264	rs2251244	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	14q23.1	NR	rs2251244-?	NR	2E-9		0.0485	[0.033-0.064] unit decrease	Illumina [at least 560000] (imputed)	N
1058	chr14	62023766	62023767	rs2251260	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	14q23.1	PRKCH	rs2251260-T	0.17	3E-10		0.05	[0.04-0.06] unit increase	Illumina [at least 560000] (imputed)	N
1058	chr14	62080025	62080026	rs2253681	33093117	Yan Q	2020-10-22	Eur Respir J	A genome-wide association study of severe asthma exacerbations in Latino children and adolescents.	Severe exacerbations in childhood asthma	2,509 Latino cases, 1,501 Latino controls	NA	14q23.2	FLJ22447	rs2253681-A	0.16	6E-9		1.55	[1.34-1.79]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1059	chr14	62185294	62185295	rs8005745	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	14q23.2	intergenic	rs8005745-?	NR	4E-6	(CD40L)			Affymetrix [70897]	N
1059	chr14	62202798	62202799	rs7161527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q23.2		rs7161527-C	NR	2E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1060	chr14	62360074	62360075	rs217669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q23.2	NR	rs217669-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1060	chr14	62360074	62360075	rs217669	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q23.2	NR	rs217669-C	0.272	3E-10		0.017486177	[0.012-0.023] unit increase	Affymetrix [10549349] (imputed)	N
1060	chr14	62360074	62360075	rs217669	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q23.2	NA	rs217669-T	0.7224	6E-16		0.0172	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1060	chr14	62361020	62361021	rs217672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q23.2		rs217672-C	NR	7E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1060	chr14	62361020	62361021	rs217672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q23.2		rs217672-C	NR	7E-10		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1060	chr14	62361020	62361021	rs217672	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q23.2		rs217672-C	0.27	3E-8				NR [NR] (imputed)	N
1060	chr14	62361020	62361021	rs217672	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q23.2		rs217672-C	0.27	4E-15		0.013	% increase	NR [NR] (imputed)	N
1060	chr14	62361020	62361021	rs217672	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q23.2	SYT16	rs217672-A	0.72828	2E-14		0.0118089	[0.0088-0.0148] unit decrease	Affymetrix [12370749]	N
1060	chr14	62361020	62361021	rs217672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q23.2		rs217672-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1060	chr14	62361020	62361021	rs217672	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q23.2	NA	rs217672-A	0.7244	2E-15		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1061	chr14	62402978	62402979	rs11620735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SNAPC1	rs11620735-?	NR	7E-6	(pantothenic acid)	0.44648305	[0.25-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1061	chr14	62432012	62432013	rs2784505	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (90 years and older)	5,406 European ancestry cases, 15,112 European ancestry controls	7,330 European ancestry cases, 61,156 European ancestry controls	14q23.2	SYT16	rs2784505-G	0.066	9E-6		1.15	[1.08-1.22]	Illumina [2470825] (imputed)	N
1061	chr14	62460218	62460219	rs7143933	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q23.2	SNAPC1, SYT16	rs7143933-T	0.2615	7E-9		1.0249051		Affymetrix [11880941] (imputed)	N
1061	chr14	62463310	62463311	rs62639692	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	14q23.2	SYT16	rs62639692-G	0.047	6E-6		1.69	[1.33-2.16]	Illumina [15566900] (imputed)	N
1061	chr14	62479431	62479432	rs78904121	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	14q23.2		rs78904121-A	NR	3E-6		4.6570573	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1061	chr14	62518347	62518348	rs6573416	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	14q23.2	SYT16	rs6573416-G	0.13	3E-6		0.03	[NR] unit increase	Illumina [2380486] (imputed)	N
1062	chr14	62549818	62549819	rs4902100	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	14q23.2	SYT16	rs4902100-G	0.283	4E-6			[NR]	Illumina [9250000] (imputed)	N
1062	chr14	62553256	62553257	rs8014067	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	14q23.2	SYT16	rs8014067-?	NR	3E-9		1.6949153	[NR]	NR [352000]	N
1062	chr14	62554508	62554508	rs113730106	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	14q23.2	SYT16	rs113730106-T	NR	3E-6	(adjusted for clinical variables)			Illumina [up to 3803121] (imputed)	N
1062	chr14	62555522	62555523	rs4902103	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SNAPC1	rs4902103-?	NR	4E-7	(TAG 56:4)	0.22654696	[0.14-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1062	chr14	62555522	62555523	rs4902103	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SNAPC1	rs4902103-?	NR	3E-6	(TAG 56:3)	0.21369548	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1062	chr14	62557327	62557328	rs11846930	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SNAPC1	rs11846930-?	NR	8E-6	(5-hydroxyindoleacetic acid)	0.32501453	[0.18-0.47] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1062	chr14	62593296	62593297	rs1954494	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q23.2	NA	rs1954494-T	0.5608	2E-9		0.0097	[0.0066-0.0128] unit increase	NR [~ 27400000] (imputed)	N
1062	chr14	62606534	62606535	rs117807175	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	14q23.2	NR	rs117807175-G		4E-6		0.5143	[0.3-0.73] SD units increase	NR [10700000] (imputed)	N
1063	chr14	62654697	62654698	rs973968	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	14q23.2	Q6ZUR9	rs973968-?	NR	3E-6	(transferrin saturation)			Affymetrix [100846]	N
1063	chr14	62667443	62667444	rs77260760	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q23.2	intergenic	rs77260760-G	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1063	chr14	62678302	62678303	rs1514928	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	14q23.2	intergenic	rs1514928-?	NR	3E-6	(binary)			Perlegen [429981]	N
1063	chr14	62732663	62732664	rs10146615	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	14q23.2	intergenic	rs10146615-T	NR	7E-6		0.138	[0.077-0.199] unit decrease	Illumina [628922]	N
1064	chr14	62805482	62805483	rs8007381	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	KCNH5	rs8007381-?	NR	4E-6	(tryptophan)	2.111864	[1.22-3.01] unit increase	Affymetrix [at least 2500000] (imputed)	N
1064	chr14	62888069	62888070	rs35543418	31003110	Kim S	2019-04-08	J Affect Disord	Heritability estimates of individual psychological distress symptoms from genetic variation.	Psychological wellbeing index 12 (lack of enjoying daily life)	up to 12,680 Korean ancestry individuals	NA	14q23.2	NR	rs35543418-A	0.03	1E-8		0.4695	[0.31-0.63] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1065	chr14	62957109	62957110	rs11158418	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs11158418-T	0.4699	4E-6		4.633	z score increase	Illumina [7275796] (imputed)	N
1065	chr14	62968394	62968395	rs4902141	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	14q23.2	NR	rs4902141-?	0.026	1E-7		2.161	[1.629-2.867] unit increase	Illumina [563945]	N
1066	chr14	63047682	63047683	rs76513344	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	14q23.2	KCNH5	rs76513344-C	NR	2E-9		0.0995	[NR] unit decrease	Illumina [11892802] (imputed)	N
1066	chr14	63048447	63048448	rs11158434	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q23.2	NA	rs11158434-A	0.1963	4E-9		0.0126	[0.0085-0.0167] unit increase	NR [~ 27400000] (imputed)	N
1066	chr14	63062563	63062564	rs58720911	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.2	NR	rs58720911-A	0.02091	5E-11	(FBP1)	3.246	NR unit increase	Illumina [1671387] (imputed)	N
1066	chr14	63069468	63069469	rs79733879	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	163,984 British ancestry men	NA	14q23.2	NR	rs79733879-T	0.1086	1E-9		0.03402	[0.023-0.045] unit increase	Affymetrix [10549349] (imputed)	N
1066	chr14	63101675	63101678	rs1475869928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.2	NR	rs1475869928-C	0.01742	9E-9	(NUCB2)	0.01292	NR unit increase	Illumina [1671387] (imputed)	N
1066	chr14	63122798	63122799	rs17834779	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	14q23.2	NR	rs17834779-A	NR	7E-6		0.4471	NR unit increase	Illumina [4533042] (imputed)	N
1066	chr14	63162611	63162612	rs10129320	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	14q23.2	intergenic	rs10129320-?	NR	7E-6		1.4042025	[1.21-1.63]	Illumina [at least 4756722] (imputed)	N
1067	chr14	63177143	63177144	rs869834	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	14q23.2	KCNH5	rs869834-T	0.59	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1067	chr14	63248852	63248853	rs243167	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KCNH5	rs243167-?	NR	4E-9	(female)	1.29714	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1068	chr14	63318233	63318234	rs8020107	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	14q23.2	NR	rs8020107-C	NR	8E-7		0.00618029	[0.0037-0.0086] unit increase	Affymetrix [9740198] (imputed)	N
1068	chr14	63322346	63322347	rs8012941	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	14q23.2	KCNH5	rs8012941-G	0.4975174	4E-6	(remission - SSRI treated - 12 weeks)	1.5387	[1.35-1.72]	Affymetrix, Illumina [1200000] (imputed)	N
1068	chr14	63353478	63353479	rs10138240	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	14q23.2	KCNH5	rs10138240-G	0.513767	9E-6		0.020360729	[0.011-0.029] SD units increase	NR [9926106] (imputed)	N
1068	chr14	63356252	63356253	rs10136789	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	14q23.2	KCNH5	rs10136789-?	NR	5E-7		5.05	[NR] z score increase	Affymetrix, Illumina [up to 583824] (imputed)	N
1068	chr14	63369464	63369465	rs7157510	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q23.2	KCNH5	rs7157510-T	NR	5E-8		0.017288323	[0.011-0.023] unit increase	Affymetrix [NR]	N
1068	chr14	63388657	63388658	rs17223839	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	14q23.2	NR	rs17223839-G	0.454465482	9E-6		0.13206975	[0.074-0.19] unit decrease	Affymetrix [536506]	N
1069	chr14	63462030	63462031	rs17100612	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	14q23.2	NR	rs17100612-T	0.083	5E-7	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
1070	chr14	63582468	63582469	rs1957774	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	RHOJ	rs1957774-?	NR	4E-6	(inosine)	0.1837962	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1070	chr14	63600089	63600090	rs10129516	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	14q23.2	PARP1P2, RHOJ	rs10129516-T	0.1156	5E-16		3.104	[2.329-4.136]	Illumina [274400]	N
1070	chr14	63602958	63602959	rs8019718	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	RHOJ	rs8019718-?	NR	3E-6	(fum; mal; alpha keto)	0.19893071	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1070	chr14	63633508	63633509	rs10150416	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q23.2		rs10150416-G	0.61366	4E-6		0.032104	[0.018-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1070	chr14	63665234	63665235	rs13379119	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q23.2	RHOJ	rs13379119-C	0.532585	8E-19		0.0164922	[0.013-0.02] unit decrease	NR [13737936] (imputed)	N
1070	chr14	63665234	63665235	rs13379119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q23.2		rs13379119-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1070	chr14	63684074	63684075	rs59093387	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	14q23.2	intergenic	rs59093387-A	NR	7E-6		52.5822	[29.65-75.52] unit increase	Illumina [6995140] (imputed)	N
1071	chr14	63784377	63784378	rs34096978	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q23.2	GPHB5	rs34096978-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
1072	chr14	63839386	63839387	rs3742625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.2		rs3742625-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1072	chr14	63854686	63854687	rs3783747	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.2	NR	rs3783747-?	NR	3E-8				Affymetrix [NR]	N
1072	chr14	63891397	63891398	rs28402153	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	14q23.2		rs28402153-?	NR	4E-6		0.3796407	[0.22-0.54] unit decrease	Illumina [9901720] (imputed)	N
1072	chr14	63928545	63928546	rs8016306	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	14q23.2	PPP2R5E	rs8016306-A	0.8	4E-9		0.335	[0.22-0.45] unit increase	Affymetrix [~ 9800000] (imputed)	N
1072	chr14	63953521	63953522	rs11158493	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	14q23.2	PPP2R5E	rs11158493-?	NR	9E-7		2.0	[1.56-2.56]	Illumina [326385]	N
1073	chr14	63997709	63997710	rs76664468	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	14q23.2	PPP2R5E	rs76664468-T	NR	3E-8		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
1073	chr14	64008808	64008809	rs1255718	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q23.2	NR	rs1255718-T	0.2676	2E-8				NR [9056863] (imputed)	N
1073	chr14	64019983	64019984	rs181185304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchitis	4,483 European ancestry cases, 474,818 European ancestry controls, 1,465 East Asian ancestry cases, 170,000 East Asian ancestry controls	NA	14q23.2		rs181185304-C	NR	2E-8		2.1325	[1.39-2.87] unit increase	Affymetrix, Illumina [25844193] (imputed)	N
1073	chr14	64019983	64019984	rs181185304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchitis	1,465 East Asian ancestry cases, 170,000 East Asian ancestry controls	NA	14q23.2		rs181185304-C	0.004130738	2E-8		2.1325305	[1.39-2.87] unit increase	Illumina [13428877] (imputed)	N
1073	chr14	64024734	64024735	rs145964053	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	14q23.2		rs145964053-A	0.02576	2E-7		3.3	[2.096-5.193]	Affymetrix [7975321] (imputed)	N
1073	chr14	64034436	64034437	rs61984009	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984009-G	NR	8E-11		0.0524	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64036359	64036360	rs141104429	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs141104429-T	NR	2E-24		0.1782	[0.14-0.21] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64038067	64038068	rs61984012	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984012-A	NR	8E-11		0.0524	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64038520	64038521	rs78846564	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs78846564-T	NR	4E-10		0.0637	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64039482	64039483	rs150487314	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs150487314-C	NR	5E-24		0.1031	[0.083-0.123] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64043660	64043661	rs56021364	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56021364-G	NR	4E-11		0.0534	[0.038-0.069] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64043892	64043893	rs55758170	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55758170-T	NR	3E-11		0.0361	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64044096	64044097	rs1271565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1271565-C	NR	2E-18		0.115155	[0.089-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1073	chr14	64044096	64044097	rs1271565	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1271565-C	NR	4E-13		0.0912027	[0.067-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1073	chr14	64046483	64046484	rs11847033	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11847033-C	NR	1E-27		0.1396	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64047261	64047262	rs118166657	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	14q23.2	WDR89	rs118166657-?	0.02	1E-7		7.2	[NR]	Affymetrix [4893794] (imputed)	N
1073	chr14	64047776	64047777	rs11158497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158497-A	NR	3E-31		0.0946	[0.079-0.11] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64049967	64049968	rs59420981	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs59420981-A	NR	4E-11		0.1041	[0.073-0.135] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64050804	64050805	rs61984020	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984020-A	NR	8E-11		0.0729	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64051379	64051380	rs61984021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984021-C	NR	8E-11		0.0546	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64052463	64052464	rs61508917	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61508917-C	NR	7E-11		0.0854	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64052720	64052721	rs61984023	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984023-G	NR	8E-11		0.077	[0.054-0.1] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64052974	64052975	rs111452458	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs111452458-C	NR	3E-31		0.0938	[0.078-0.11] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64054556	64054557	rs61984024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984024-C	NR	8E-11		0.0323	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64059228	64059229	rs56169803	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56169803-G	NR	4E-11		0.0659	[0.046-0.085] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64061365	64061366	rs61984029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984029-G	NR	8E-11		0.1631	[0.11-0.21] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64070075	64070076	rs189198746	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	14q23.2		rs189198746-C	0.9891	3E-7		0.271	[0.17-0.37] unit decrease	Illumina [7778465] (imputed)	N
1073	chr14	64071095	64071096	rs61984031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984031-T	NR	9E-11		0.0577	[0.04-0.075] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64071998	64071999	rs61984033	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984033-G	NR	9E-11		0.0604	[0.042-0.079] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64075330	64075331	rs61984036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984036-T	NR	9E-11		0.2538	[0.18-0.33] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64077952	64077953	rs116977984	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs116977984-T	NR	3E-28		0.0786	[0.065-0.093] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64078846	64078847	rs7145740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7145740-A	NR	3E-18		0.211345	[0.16-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1073	chr14	64078846	64078847	rs7145740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7145740-A	NR	5E-17		0.195977	[0.15-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1073	chr14	64080636	64080637	rs118069495	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs118069495-G	NR	9E-28		0.0837	[0.069-0.099] unit decrease	Illumina [6720657] (imputed)	N
1073	chr14	64086358	64086359	rs12147764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12147764-T	NR	4E-27		0.1241	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1073	chr14	64089283	64089284	rs11845514	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11845514-G	NR	1E-27		0.1856	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64095504	64095505	rs61984044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984044-A	NR	9E-11		0.067	[0.047-0.087] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64095513	64095514	rs61984045	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984045-C	NR	9E-11		0.0555	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64097898	64097899	rs61984046	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984046-A	NR	9E-11		0.1709	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64099077	64099078	rs61984047	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984047-A	NR	9E-11		0.1709	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64099386	64099387	rs61984048	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984048-T	NR	9E-11		0.0318	[0.022-0.041] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64105178	64105179	rs8020893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8020893-G	NR	5E-10		0.071	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64105407	64105408	rs8020833	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8020833-T	NR	5E-10		0.0779	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64106043	64106044	rs61984051	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984051-C	NR	9E-11		0.0619	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64106414	64106415	rs55665448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55665448-C	NR	3E-11		0.0628	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64106928	64106929	rs61984055	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61984055-T	NR	9E-11		0.043	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64106997	64106998	rs10498510	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SGPP1	rs10498510-?	NR	3E-7	(SM 14:0)	0.5211528	[0.32-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1074	chr14	64107655	64107656	rs73263634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73263634-C	NR	3E-10		0.0802	[0.055-0.105] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64108334	64108335	rs8019057	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8019057-G	NR	5E-10		0.0739	[0.051-0.097] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64108347	64108348	rs8018194	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8018194-C	NR	5E-10		0.0486	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64108453	64108454	rs8018382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8018382-T	NR	5E-10		0.029	[0.02-0.038] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64108537	64108538	rs10498511	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs10498511-G	NR	1E-36		0.1181	[0.1-0.136] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64108581	64108582	rs61985669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985669-C	NR	9E-11		0.0519	[0.036-0.068] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64108883	64108884	rs8018872	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8018872-T	NR	2E-17		0.297673	[0.23-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64108883	64108884	rs8018872	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8018872-A	NR	5E-10		0.0798	[0.055-0.105] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64108883	64108884	rs8018872	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8018872-T	NR	6E-14		0.252841	[0.19-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	8E-19		0.255148	[0.2-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	6E-20		0.264865	[0.21-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	1E-12		0.205047	[0.15-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	6E-16		0.232741	[0.18-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	8E-33		0.341214	[0.29-0.4] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	2E-20		0.26394	[0.21-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	1E-15		0.217068	[0.16-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109020	64109021	rs12878926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878926-G	NR	3E-24		0.278436	[0.22-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64109285	64109286	rs8003101	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8003101-C	NR	5E-10		0.104	[0.071-0.137] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64109440	64109441	rs8003314	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8003314-T	NR	5E-10		0.0363	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64110436	64110437	rs56060943	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56060943-G	NR	4E-11		0.0933	[0.066-0.121] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64110591	64110592	rs112955922	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.2	NR	rs112955922-T	0.0122	2E-8	(EPHX1)	4.255	NR unit increase	Illumina [1671387] (imputed)	N
1074	chr14	64110783	64110784	rs61985670	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985670-G	NR	9E-11		0.0458	[0.032-0.06] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64112158	64112159	rs8010642	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8010642-T	NR	5E-10		0.122	[0.084-0.16] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64112218	64112219	rs56858295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56858295-A	NR	4E-11		0.0854	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64114159	64114160	rs77539437	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs77539437-A	NR	4E-10		0.104	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64114364	64114365	rs61985671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985671-C	NR	9E-11		0.0516	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64115097	64115098	rs6573528	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs6573528-G	NR	1E-10		0.0544	[0.038-0.071] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64115805	64115806	rs61985672	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985672-G	NR	9E-11		0.0848	[0.059-0.11] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64116824	64116825	rs56342043	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56342043-A	NR	4E-11		0.0625	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64117143	64117144	rs56094435	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56094435-G	NR	4E-11		0.0384	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64117801	64117802	rs61985674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985674-G	NR	9E-11		0.066	[0.046-0.086] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64119904	64119905	rs140126911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs140126911-C	NR	2E-24		0.063	[0.051-0.075] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64120205	64120206	rs7142737	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7142737-C	NR	2E-10		0.1465	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64120331	64120332	rs115226067	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs115226067-C	NR	1E-29		0.098	[0.081-0.115] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64120332	64120333	rs114961013	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs114961013-G	NR	8E-30		0.1254	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64121295	64121296	rs17101346	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101346-G	NR	4E-22		0.0589	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64121419	64121420	rs56113838	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56113838-T	NR	4E-11		0.0496	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64121890	64121891	rs56301550	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56301550-T	NR	4E-11		0.0636	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64123689	64123690	rs55763522	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55763522-C	NR	3E-11		0.0549	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64124367	64124368	rs61985677	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985677-A	NR	9E-11		0.0549	[0.038-0.072] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64124737	64124738	rs139289349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs139289349-G	NR	2E-24		0.1007	[0.081-0.12] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64124895	64124896	rs9671362	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs9671362-C	NR	8E-10		0.0926	[0.063-0.122] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64125194	64125195	rs55874427	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55874427-G	NR	3E-11		0.0423	[0.03-0.055] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64125495	64125496	rs55797516	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55797516-G	NR	3E-11		0.0763	[0.054-0.099] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64127230	64127231	rs17101348	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101348-G	NR	4E-22		0.0728	[0.058-0.088] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64129463	64129464	rs7154883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7154883-C	NR	2E-10		0.0754	[0.052-0.099] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64129484	64129485	rs7155351	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7155351-G	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64129613	64129614	rs8017282	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8017282-T	NR	5E-10		0.0485	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64130052	64130053	rs8013242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8013242-A	NR	5E-10		0.0715	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64131063	64131064	rs8018034	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8018034-C	NR	5E-10		0.0486	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64131576	64131577	rs11847188	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11847188-T	NR	1E-27		0.1226	[0.1-0.14] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64131723	64131724	rs11847332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11847332-T	NR	1E-27		0.1852	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64132230	64132231	rs61985680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985680-A	NR	9E-11		0.0974	[0.068-0.127] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64132375	64132376	rs61985681	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985681-T	NR	9E-11		0.0826	[0.058-0.107] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64132739	64132740	rs7141460	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7141460-G	NR	2E-10		0.0592	[0.041-0.077] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64133155	64133156	rs6573529	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs6573529-G	NR	1E-10		0.0217	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64133660	64133661	rs61985682	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985682-G	NR	9E-11		0.1553	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64133674	64133675	rs7148726	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7148726-A	NR	2E-10		0.051	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64133930	64133931	rs73263671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73263671-C	NR	3E-10		0.0661	[0.046-0.087] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64134140	64134141	rs61692440	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61692440-T	NR	7E-11		0.1139	[0.08-0.148] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64135724	64135725	rs10162453	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs10162453-C	NR	7E-40		0.0927	[0.079-0.106] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64136099	64136100	rs61985684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985684-T	NR	9E-11		0.0549	[0.038-0.072] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64136687	64136688	rs7144490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7144490-G	NR	2E-10		0.0518	[0.036-0.068] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64137218	64137219	rs7149625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7149625-C	NR	2E-10		0.0512	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64137470	64137471	rs56247501	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56247501-C	NR	4E-11		0.0619	[0.043-0.08] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64138221	64138222	rs61985687	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985687-G	NR	9E-11		0.0475	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64138971	64138972	rs56973820	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56973820-C	NR	4E-11		0.1521	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64140324	64140325	rs61985689	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985689-T	NR	9E-11		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64140950	64140951	rs73263676	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73263676-C	NR	3E-10		0.0693	[0.048-0.091] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64141739	64141740	rs61985690	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985690-T	NR	9E-11		0.0418	[0.029-0.054] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64141781	64141782	rs73263680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73263680-T	NR	3E-10		0.1059	[0.073-0.139] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64143392	64143393	rs113085196	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113085196-G	NR	5E-30		0.1495	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64143824	64143825	rs7154718	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7154718-C	NR	2E-10		0.0523	[0.036-0.068] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64144039	64144040	rs61985691	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs61985691-A	NR	9E-11		0.0633	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64145300	64145301	rs17101355	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101355-C	NR	4E-22		0.0749	[0.06-0.09] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64147576	64147577	rs12147926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12147926-T	NR	4E-27		0.1048	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64148291	64148292	rs147173826	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs147173826-G	NR	4E-24		0.0761	[0.061-0.091] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64151960	64151961	rs11850853	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11850853-C	NR	1E-27		0.1221	[0.1-0.14] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64154301	64154302	rs55706628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55706628-C	NR	3E-11		0.0938	[0.066-0.121] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64154979	64154980	rs11846081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11846081-T	NR	1E-27		0.1855	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64155425	64155426	rs113338490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs113338490-C	NR	4E-11		0.250307	[0.18-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64155425	64155426	rs113338490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs113338490-C	NR	2E-10		0.243531	[0.17-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64155425	64155426	rs113338490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs113338490-C	NR	5E-20		0.344091	[0.27-0.42] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64155425	64155426	rs113338490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113338490-C	NR	6E-30		0.1255	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64155425	64155426	rs113338490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs113338490-C	NR	2E-16		0.295211	[0.22-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64156217	64156218	rs8019280	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8019280-G	NR	5E-10		0.0453	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64161325	64161326	rs8017835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8017835-G	NR	5E-10		0.1028	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64163036	64163037	rs73265705	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73265705-C	NR	3E-10		0.0534	[0.037-0.07] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64163560	64163561	rs111406613	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs111406613-A	NR	3E-31		0.1377	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64163827	64163828	rs7148755	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7148755-C	NR	2E-10		0.0685	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64165025	64165026	rs3742622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs3742622-A	NR	5E-12		0.0639	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64165825	64165826	rs17101371	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101371-T	NR	4E-22		0.0684	[0.054-0.082] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64168836	64168837	rs7156468	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7156468-C	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64169992	64169993	rs73265719	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73265719-T	NR	3E-10		0.0485	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64170740	64170741	rs7157815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7157815-C	NR	2E-10		0.0411	[0.028-0.054] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64170749	64170750	rs113431361	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113431361-T	NR	6E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64172328	64172329	rs4346121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4346121-G	NR	1E-11		0.0559	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64172350	64172351	rs113023275	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113023275-A	NR	5E-30		0.0738	[0.061-0.087] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64173849	64173850	rs11158502	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158502-A	NR	3E-31		0.1006	[0.084-0.118] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64173924	64173925	rs11158503	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158503-G	NR	4E-31		0.1372	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64173949	64173950	rs11158504	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158504-T	NR	4E-31		0.0936	[0.078-0.109] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	2E-13		0.172228	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	2E-12		0.165335	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	5E-12		0.161735	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	1E-10		0.150888	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	1E-25		0.243439	[0.2-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	2E-11		0.155085	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174021	64174022	rs11158505	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11158505-T	NR	3E-21		0.210852	[0.17-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64174157	64174158	rs11158506	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158506-G	NR	4E-31		0.0747	[0.062-0.087] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64175790	64175791	rs11849082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11849082-G	NR	1E-27		0.0785	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64176331	64176332	rs17101374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101374-G	NR	4E-22		0.0976	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64177126	64177127	rs7156219	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7156219-G	NR	2E-10		0.0793	[0.055-0.104] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64177929	64177930	rs113406905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113406905-T	NR	6E-30		0.1062	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64183700	64183701	rs148590087	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs148590087-T	NR	4E-24		0.0763	[0.062-0.091] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64184648	64184649	rs73265743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs73265743-G	NR	7E-11		0.244143	[0.17-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64184648	64184649	rs73265743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs73265743-G	NR	3E-10		0.236325	[0.16-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64184648	64184649	rs73265743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs73265743-G	NR	3E-20		0.341888	[0.27-0.41] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64184648	64184649	rs73265743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73265743-C	NR	3E-10		0.0444	[0.031-0.058] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64184648	64184649	rs73265743	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs73265743-G	NR	2E-16		0.292317	[0.22-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64184734	64184735	rs111774795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs111774795-G	NR	6E-31		0.1192	[0.099-0.139] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64185300	64185301	rs73265745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73265745-G	NR	3E-10		0.051	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64188592	64188593	rs8003077	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8003077-G	NR	5E-10		0.0365	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64190868	64190869	rs189870469	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs189870469-C	NR	1E-13		0.0552	[0.041-0.07] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64190869	64190870	rs182319497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs182319497-C	NR	1E-13		0.13	[0.096-0.164] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64191749	64191750	rs11845765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11845765-T	NR	1E-27		0.0875	[0.072-0.103] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64192084	64192085	rs11850599	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11850599-T	NR	1E-27		0.0918	[0.075-0.108] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64192124	64192125	rs2031941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2031941-T	NR	1E-11		0.252549	[0.18-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64192124	64192125	rs2031941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2031941-T	NR	5E-11		0.246789	[0.17-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64192124	64192125	rs2031941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2031941-T	NR	2E-20		0.34403	[0.27-0.42] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64192124	64192125	rs2031941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs2031941-C	NR	1E-13		0.0629	[0.046-0.08] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64192124	64192125	rs2031941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2031941-T	NR	5E-16		0.288678	[0.22-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64192303	64192304	rs2031940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs2031940-T	NR	1E-13		0.1057	[0.078-0.134] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64192403	64192404	rs56015314	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56015314-G	NR	4E-11		0.119	[0.084-0.154] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64194458	64194459	rs8006901	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8006901-T	NR	5E-10		0.0775	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64195004	64195005	rs78629217	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs78629217-G	NR	4E-10		0.036	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64196134	64196135	rs113375480	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113375480-T	NR	6E-30		0.195	[0.16-0.23] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64196192	64196193	rs150113282	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs150113282-G	NR	5E-24		0.1029	[0.083-0.123] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64196336	64196337	rs56280069	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56280069-C	NR	4E-11		0.0533	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64196497	64196498	rs56388534	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56388534-A	NR	4E-11		0.0525	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64198063	64198064	rs141948304	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs141948304-G	NR	2E-24		0.0854	[0.069-0.102] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64199077	64199078	rs55919053	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs55919053-C	NR	3E-11		0.0609	[0.043-0.079] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64199145	64199146	rs56051693	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56051693-A	NR	4E-11		0.0699	[0.049-0.091] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64202492	64202493	rs73267621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs73267621-T	NR	3E-10		0.0406	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64206632	64206633	rs56105514	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs56105514-A	NR	4E-11		0.048	[0.034-0.062] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64206846	64206847	rs11844499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11844499-C	NR	1E-27		0.0834	[0.069-0.098] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64207235	64207236	rs11845405	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11845405-C	NR	1E-27		0.0609	[0.05-0.072] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64207269	64207270	rs11845471	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11845471-A	NR	1E-27		0.0742	[0.061-0.088] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64207796	64207797	rs114949136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs114949136-C	NR	8E-30		0.112	[0.093-0.131] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64209576	64209577	rs57107616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs57107616-C	NR	4E-11		0.0376	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64209800	64209801	rs111719803	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs111719803-C	NR	6E-31		0.0947	[0.079-0.111] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64213006	64213007	rs11850575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11850575-A	NR	1E-27		0.0643	[0.053-0.076] unit increase	Illumina [6720657] (imputed)	N
1074	chr14	64214836	64214837	rs8020831	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8020831-G	NR	5E-10		0.0712	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64216958	64216959	rs143286593	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs143286593-T	NR	2E-24		0.0676	[0.055-0.081] unit decrease	Illumina [6720657] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	1E-19		0.263084	[0.21-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	9E-21		0.273282	[0.22-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	1E-13		0.216096	[0.16-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	2E-17		0.246304	[0.19-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	8E-35		0.355108	[0.3-0.41] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	5E-21		0.270177	[0.21-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	3E-17		0.231812	[0.18-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64219918	64219919	rs36057372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs36057372-G	NR	2E-26		0.294609	[0.24-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64223910	64223911	rs118060024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs118060024-T	NR	1E-11		0.261626	[0.19-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64223910	64223911	rs118060024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs118060024-T	NR	8E-11		0.253318	[0.18-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64223910	64223911	rs118060024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs118060024-T	NR	4E-21		0.363193	[0.29-0.44] unit increase	Affymetrix [87696910] (imputed)	N
1074	chr14	64223910	64223911	rs118060024	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs118060024-T	NR	2E-17		0.313226	[0.24-0.39] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64227595	64227596	rs12879147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12879147-C	NR	5E-26		0.0758	[0.062-0.09] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64227595	64227596	rs12879147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12879147-G	NR	5E-26		0.0647	[0.053-0.077] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64230088	64230089	rs4902242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4902242-G	NR	2E-11		0.0646	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64230088	64230089	rs4902242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4902242-C	NR	2E-11		0.0443	[0.031-0.057] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7160525-A	NR	2E-10		0.0553	[0.038-0.072] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7160525-A	NR	2E-10		0.0504	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7160525-A	NR	2E-10		0.058	[0.04-0.076] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	14q23.2	NR	rs7160525-?	NR	6E-10	(N24S16)	0.36	[0.25-0.47] unit increase	Illumina [5280459] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs7160525-A	NR	1E-9	(SM(38:1;2))	0.2905	[0.2-0.38] unit increase	Illumina [~ 9300000] (imputed)	N
1075	chr14	64232219	64232220	rs7160525	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	14q23.2	SGPP1, SYNE2	rs7160525-A	NR	7E-15	(Phosphatidylcholine with diacyl residue sum C28:1)	0.415635	[0.31-0.52] unit increase	Illumina [up to 9281895] (imputed)	N
1075	chr14	64232385	64232386	rs17101394	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101394-C	NR	4E-22		0.0917	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64232385	64232386	rs17101394	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17101394-G	NR	4E-22		0.0823	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64232385	64232386	rs17101394	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	14q23.2	SGPP1	rs17101394-?	NR	3E-57	(levels)	0.0	[0.70-6.3] % increase	Illumina [NR] (imputed)	N
1075	chr14	64232799	64232800	rs543776173	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs543776173-A	0.2148	8E-9	(SM d16:1/24:0)	0.1454	[0.095-0.196] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008068-A	NR	5E-10		0.0503	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008068-T	NR	5E-10		0.1151	[0.079-0.151] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008068-G	NR	5E-10		0.0845	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SYNE2, SGPP1	rs8008068-A	0.76592	5E-18	(palmitoyl dihydrosphingomyelin (d18:0/16:0)*)	0.235	[0.18-0.29] unit increase	Illumina [13039987] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	14q23.2	SGPP1, SYNE2	rs8008068-A	0.76592	5E-18	(palmitoyl dihydrosphingomyelin (d18:0/16:0)*)	0.235	[0.18-0.29] unit increase	Illumina [13039987] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	14q23.2	SGPP1	rs8008068-A	0.839604	4E-8		0.0156944	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs8008068-G	NR	4E-11	(SM(34:0;2))	0.3091	[0.22-0.4] unit decrease	Illumina [~ 9300000] (imputed)	N
1075	chr14	64233716	64233717	rs8008068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q23.2	RP11-804M7.2	rs8008068-G	0.1597	6E-11		0.03161827	[0.022-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1075	chr14	64233719	64233720	rs8008070	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008070-G	NR	5E-10		0.077	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64233719	64233720	rs8008070	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008070-T	NR	5E-10		0.0947	[0.065-0.124] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64233719	64233720	rs8008070	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8008070-C	NR	5E-10		0.1029	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64233719	64233720	rs8008070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q23.2	RP11-804M7.2	rs8008070-T	0.15991	7E-12		0.021030452	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64233719	64233720	rs8008070	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q23.2	SGPP1, SYNE2	rs8008070-T	NR	5E-22	(Hydroxysphingomyelin with acyl residue sum C14:1/Hydroxysphingomyelin with acyl residue sum C16:1)	0.535136	[0.43-0.64] unit increase	Illumina [up to 9281895] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	2E-8		0.0314614	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	2E-9		0.0346035	[0.023-0.046] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	2E-11		0.0382369	[0.027-0.049] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	7E-11		0.0366083	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841536	5E-11		0.0373381	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	1E-9		0.0348054	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	1E-8		0.0323215	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	14q23.2		rs543290203-C	0.841534	9E-11		0.0368893	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs543290203-CT	0.1257	8E-11	(Hex2Cer d16:1/16:0)	0.1868	[0.13-0.24] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs543290203-CT	0.1257	2E-12	(SM d16:1/20:0)	0.1639	[0.12-0.21] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64233829	64233829	rs543290203	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs543290203-CT	0.1257	2E-10	(HexCer d16:1/22:0)	0.2062	[0.14-0.27] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64233979	64233980	rs8012828	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8012828-G	NR	5E-10		0.0349	[0.024-0.046] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64233979	64233980	rs8012828	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8012828-A	NR	5E-10		0.0471	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64234033	64234034	rs34609767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34609767-T	NR	2E-12		0.0758	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64234033	64234034	rs34609767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34609767-T	NR	2E-12		0.0948	[0.068-0.121] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64234033	64234034	rs34609767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34609767-C	NR	2E-12		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64234242	64234243	rs4902243	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4902243-T	NR	2E-11		0.0834	[0.059-0.108] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64234242	64234243	rs4902243	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4902243-T	NR	2E-11		0.0646	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64234242	64234243	rs4902243	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs4902243-G	NR	3E-26	(SM(32:1;2))	0.4837	[0.39-0.57] unit increase	Illumina [~ 9300000] (imputed)	N
1075	chr14	64234242	64234243	rs4902243	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	14q23.2	SGPP1	rs4902243-A	0.86	3E-37	(X-10510)	0.044	[0.036-0.052] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1075	chr14	64234699	64234700	rs147822428	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs147822428-G	NR	4E-24		0.0897	[0.072-0.107] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64234699	64234700	rs147822428	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs147822428-C	NR	4E-24		0.0805	[0.065-0.096] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64235069	64235070	rs17225497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs17225497-C	NR	4E-22		0.0594	[0.047-0.072] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	6E-10		0.0340166	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	1E-11		0.0373908	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	3E-11		0.0367811	[0.026-0.048] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	4E-11		0.0364533	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	2E-8		0.0304656	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	14q23.2		rs7157785-G	0.840079	4E-8		0.0295206	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	3E-25		0.192912	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	5E-90		0.318968	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	6E-18		0.157731	[0.12-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	7E-26		0.196572	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	1E-19		0.133601	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	4E-91		0.322755	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	1E-73		0.288522	[0.26-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	1E-26		0.171722	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	1E-11		0.105804	[0.075-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	4E-74		0.288106	[0.26-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	7E-172		0.439683	[0.41-0.47] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7157785-T	NR	2E-10		0.0735	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7157785-T	NR	2E-10		0.0392	[0.027-0.051] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs7157785-G	NR	2E-10		0.0706	[0.049-0.092] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	3E-57		0.198128	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	2E-12		0.0966041	[0.07-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	8E-15		0.115305	[0.086-0.144] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	7E-84		0.303766	[0.27-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	3E-27		0.170004	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	3E-70		0.264898	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	4E-23		0.160486	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	2E-20		0.146945	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	2E-136		0.375663	[0.35-0.41] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs7157785-T	NR	3E-11		0.0951552	[0.067-0.123] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q23.2	intergenic	rs7157785-T	0.2401	2E-10		0.0206	[0.014-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q23.2	SGPP1	rs7157785-T	NR	5E-15		0.02087153	[0.016-0.026] unit increase	Illumina [242289]	N
1075	chr14	64235555	64235556	rs7157785	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	14q23.2	NR	rs7157785-T	0.16	3E-9		0.025	unit increase	Illumina [242289]	N
1075	chr14	64235555	64235556	rs7157785	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	14q23.2	SGPP1	rs7157785-T	0.1547	4E-63	(Phosphatidylcholine diacyl C28:1)	0.1105	[0.098-0.123] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	14q23.2	SGPP1	rs7157785-T	0.16	1E-133	(X-08402/cholesterol)	0.065	[0.059-0.071] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	14q23.2	SGPP1	rs7157785-T	0.16	7E-87	(X-08402)	0.068	[0.062-0.074] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SYNE2	rs7157785-?	NR	8E-12	(SM 14:0)	0.38848966	[0.28-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
1075	chr14	64235555	64235556	rs7157785	19798445	Hicks AA	2009-10-02	PLoS Genet	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	14q23.2	SGPP1	rs7157785-A	0.19	9E-66	(SM 14:0Mol%)	0.0	[0.001-0.002] mol % increase	Illumina [318237]	N
1075	chr14	64236002	64236003	rs34817779	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34817779-T	NR	2E-12		0.0302	[0.022-0.039] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34817779-C	NR	2E-12		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34817779-T	NR	2E-12		0.0763	[0.055-0.098] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs34817779-C	0.765678	2E-16	(sphingomyelin (d18:1/19:0, d19:1/18:0)*)	0.22	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs34817779-T	0.1141	5E-12	(SM d16:1/22:0)	0.163	[0.12-0.21] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs34817779-T	0.1141	2E-23	(SM d16:1/16:0)	0.2193	[0.18-0.26] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs34817779-T	0.1141	1E-16	(Cer d16:1/16:0)	0.1951	[0.15-0.24] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236002	64236003	rs34817779	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs34817779-T	0.1141	1E-15	(S1P d16:1)	0.1611	[0.12-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs35372182-A	NR	2E-12		0.0651	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs35372182-T	NR	2E-12		0.0628	[0.045-0.08] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs35372182-G	NR	2E-12		0.0755	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs35372182-A	0.765868	2E-11	(sphingomyelin (d18:2/21:0, d16:2/23:0)*)	0.182	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs35372182-A	0.8867	2E-9	(Cer d16:1/23:0)	0.1887	[0.13-0.25] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236156	64236157	rs35372182	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs35372182-A	0.8867	1E-11	(Cer d16:1/24:0)	0.2	[0.14-0.26] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	14q23.2		rs12880341-T	0.841714	4E-8		0.0301748	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	14q23.2		rs12880341-T	0.841714	2E-8		0.0310691	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	14q23.2		rs12880341-T	0.841714	1E-10		0.0356995	[0.025-0.047] unit decrease	NR [11722792] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12880341-G	NR	6E-26		0.0564	[0.046-0.067] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12880341-G	NR	6E-26		0.0676	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q23.2	SGPP1	rs12880341-T	0.840979	3E-14		0.0208365	[0.015-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	14q23.2	PPP2R5E	rs12880341-?	NR	1E-8		0.0206	[0.014-0.027] unit increase	Affymetrix [5701386] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs12880341-T	0.8858	9E-11	(Cer d16:1/18:0)	0.2065	[0.14-0.27] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs12880341-T	0.8858	7E-9	(SM d16:1/24:1)	0.1313	[0.087-0.175] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236190	64236191	rs12880341	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs12880341-T	0.8858	3E-15	(SM d16:1/18:0)	0.183	[0.14-0.23] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64236342	64236343	rs183105427	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs183105427-T	NR	1E-13		0.0687	[0.051-0.087] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64236436	64236437	rs35285205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	14q23.2		rs35285205-T	NR	4E-8		0.019	[0.012-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1075	chr14	64236436	64236437	rs35285205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	14q23.2	NR	rs35285205-T	NR	2E-10		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1075	chr14	64239350	64239351	rs12897637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12897637-G	NR	7E-26		0.1114	[0.091-0.132] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64239350	64239351	rs12897637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12897637-C	NR	7E-26		0.0774	[0.063-0.092] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64239350	64239351	rs12897637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs12897637-T	0.83683	3E-26				Affymetrix, Illumina [17210439] (imputed)	N
1075	chr14	64239350	64239351	rs12897637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q23.2		rs12897637-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	14q23.2		rs12878001-G	NR	2E-11		0.0197	[0.014-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q23.2		rs12878001-G	NR	3E-12		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12878001-T	NR	5E-26		0.1017	[0.083-0.121] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12878001-G	NR	4E-26		0.0746	[0.061-0.089] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	9E-13	(sphingomyelin (d18:2/23:1)*)	0.193	[0.14-0.25] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	8E-12	(sphingomyelin (d18:1/22:1, d18:2/22:0, d16:1/24:1)*)	0.185	[0.13-0.24] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	5E-47	(sphingomyelin (d18:1/14:0, d16:1/16:0)*)	0.387	[0.33-0.44] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	5E-13	(sphingomyelin (d18:1/22:2, d18:2/22:1, d16:1/24:2)*)	0.196	[0.14-0.25] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	3E-18	(sphingomyelin (d18:1/20:0, d16:1/22:0)*)	0.236	[0.18-0.29] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	2E-18	(sphingomyelin (d17:2/16:0, d18:2/15:0)*)	0.232	[0.18-0.28] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	1E-36	(sphingomyelin (d17:1/16:0, d18:1/15:0, d16:1/17:0)*)	0.336	[0.28-0.39] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q23.2	SGPP1, SYNE2	rs12878001-T	0.766031	1E-24	(sphingomyelin (d18:1/21:0, d17:1/22:0, d16:1/23:0)*)	0.275	[0.22-0.33] unit decrease	Illumina [13039987] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q23.2	NR	rs12878001-G	0.160057	7E-12		0.021049712	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q23.2	NR	rs12878001-G	0.160047	2E-9		0.01834861	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q23.2		rs12878001-G	0.160354	6E-22		0.029613143	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q23.2		rs12878001-G	0.160101	5E-16		0.024779368	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q23.2		rs12878001-G	0.160095	7E-14		0.022866068	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs12878001-G	0.148947	1E-17				Affymetrix, Illumina [24588908] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q23.2	NR	rs12878001-G	0.16125	3E-17		0.021246	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1075	chr14	64239628	64239629	rs12878001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q23.2	NR	rs12878001-T	0.839536	1E-28		0.029205	[0.024-0.034] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q23.2		rs112329286-TTTTA	0.160827	1E-9		0.018802393	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs112329286-T	0.8849	9E-10	(Cer d16:1/22:0)	0.2033	[0.14-0.27] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs112329286-T	0.8849	8E-10	(Cer d16:1/20:0)	0.1974	[0.13-0.26] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs112329286-T	0.8849	6E-9	(Cer d16:1/24:1)	0.1876	[0.12-0.25] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	14q23.2	SGPP1, SYNE2	rs112329286-TTTTA	NR	5E-12	(Hydroxysphingomyelin with acyl residue sum C14:1)	0.363114	[0.26-0.47] unit increase	Illumina [up to 9281895] (imputed)	N
1075	chr14	64239877	64239877	rs112329286	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q23.2	NR	rs112329286-TTTTA	NR	4E-10		0.0338632	[0.023-0.045] unit increase	Affymetrix [16832071] (imputed)	N
1075	chr14	64239958	64239959	rs12891651	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12891651-C	NR	6E-26		0.0723	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64239958	64239959	rs12891651	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12891651-T	NR	6E-26		0.0613	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64240010	64240011	rs149096129	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs149096129-G	NR	5E-24		0.0845	[0.068-0.101] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64240675	64240676	rs79663590	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs79663590-A	NR	5E-10		0.0837	[0.057-0.11] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64240675	64240676	rs79663590	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs79663590-G	NR	5E-10		0.0322	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64240902	64240903	rs113188193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113188193-C	NR	6E-30		0.1341	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64240902	64240903	rs113188193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs113188193-C	NR	5E-30		0.0713	[0.059-0.084] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64241683	64241684	rs142969393	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs142969393-A	NR	2E-24		0.0793	[0.064-0.095] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64241913	64241914	rs4902244	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	14q23.2		rs4902244-A	0.843933	8E-9		0.0308707	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1075	chr14	64241913	64241914	rs4902244	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	14q23.2		rs4902244-A	0.843933	4E-8		0.0296836	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
1075	chr14	64241913	64241914	rs4902244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.2		rs4902244-G	0.156016	1E-13		0.022783497	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1075	chr14	64241913	64241914	rs4902244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs4902244-A	0.839913	1E-19				Affymetrix, Illumina [22063850] (imputed)	N
1075	chr14	64241913	64241914	rs4902244	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs4902244-A	0.8765	4E-13	(HexCer d16:1/16:0)	0.2016	[0.15-0.26] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64242854	64242855	rs116982134	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs116982134-G	NR	3E-28		0.0754	[0.062-0.089] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	5E-21		0.109963	[0.087-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	6E-20		0.107476	[0.084-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	8E-12		0.0799805	[0.057-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	1E-16		0.0965949	[0.074-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	3E-29		0.129995	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	9E-14		0.068105	[0.05-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	1E-18		0.101797	[0.079-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	2E-16		0.090722	[0.069-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64244295	64244296	rs61184877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs61184877-C	NR	6E-27		0.119687	[0.098-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64245432	64245433	rs12880477	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12880477-A	NR	6E-26		0.0874	[0.071-0.104] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64245432	64245433	rs12880477	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12880477-C	NR	6E-26		0.068	[0.055-0.081] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64245937	64245938	rs11848860	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11848860-C	NR	1E-27		0.0738	[0.06-0.087] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64246247	64246248	rs146236048	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs146236048-G	NR	4E-24		0.0817	[0.066-0.098] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64246328	64246329	rs2356994	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs2356994-A	NR	5E-13		0.1883	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64246328	64246329	rs2356994	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs2356994-G	NR	5E-13		0.1883	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64248548	64248549	rs8003797	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8003797-A	NR	5E-10		0.0684	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64248548	64248549	rs8003797	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8003797-G	NR	5E-10		0.0713	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64248928	64248929	rs35635100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs35635100-T	NR	2E-12		0.0723	[0.052-0.092] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64248928	64248929	rs35635100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs35635100-G	NR	2E-12		0.0824	[0.059-0.105] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64254521	64254522	rs141720811	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs141720811-T	NR	2E-24		0.0771	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64255410	64255411	rs114540020	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs114540020-G	NR	7E-30		0.1347	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	2E-17		0.313563	[0.24-0.39] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	1E-16		0.307833	[0.23-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	6E-13		0.26703	[0.19-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	2E-11		0.248636	[0.18-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	2E-31		0.428856	[0.36-0.5] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs115005660-G	NR	9E-30		0.1261	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	1E-14		0.281531	[0.21-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	1E-10		0.224301	[0.16-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64264457	64264458	rs115005660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs115005660-T	NR	4E-26		0.372941	[0.3-0.44] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64268358	64268359	rs186113455	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs186113455-C	NR	1E-13		0.0624	[0.046-0.079] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64272956	64272957	rs139820814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs139820814-C	NR	2E-24		0.0656	[0.053-0.078] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64274104	64274105	rs116931617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs116931617-A	NR	3E-28		0.1447	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64275811	64275812	rs7144584	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	14q23.2	SYNE2	rs7144584-?	NR	6E-7	(FEV1/FVC decline in asthmatics)	0.3177	[0.19-0.44] unit decrease	Illumina [~ 2500000] (imputed)	N
1075	chr14	64276191	64276192	rs7148584	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs7148584-G	NR	2E-12		0.0876828	[0.063-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64277474	64277475	rs143928911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs143928911-C	NR	2E-24		0.099	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64281815	64281816	rs142689528	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs142689528-C	NR	2E-24		0.0537	[0.043-0.064] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64281936	64281937	rs36144365	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs36144365-C	NR	3E-12		0.1846	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64281936	64281937	rs36144365	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs36144365-A	NR	3E-12		0.0523	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64287429	64287430	rs77115255	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs77115255-A	NR	4E-10		0.0581	[0.04-0.076] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64289628	64289629	rs8007407	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8007407-C	NR	5E-10		0.0633	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64289987	64289988	rs141002745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs141002745-T	NR	2E-24		0.0593	[0.048-0.071] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64297719	64297720	rs146819908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs146819908-G	NR	4E-24		0.1151	[0.093-0.137] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64299068	64299069	rs117393850	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs117393850-T	NR	7E-28		0.0926	[0.076-0.109] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64300827	64300828	rs117152834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs117152834-T	NR	3E-28		0.0677	[0.056-0.08] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64301004	64301005	rs149449980	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs149449980-C	NR	5E-24		0.1031	[0.083-0.123] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64301110	64301111	rs148202809	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs148202809-T	NR	4E-24		0.0987	[0.079-0.118] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64302824	64302825	rs144465871	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs144465871-A	NR	2E-24		0.1254	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64303834	64303835	rs117030110	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs117030110-A	NR	3E-28		0.0783	[0.064-0.092] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64306333	64306334	rs75958579	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs75958579-A	NR	3E-10		0.0501	[0.034-0.066] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64307927	64307928	rs145218204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs145218204-T	NR	3E-24		0.0535	[0.043-0.064] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64311813	64311814	rs139278298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs139278298-T	NR	2E-24		0.0847	[0.068-0.101] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64312496	64312497	rs117850402	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs117850402-T	NR	8E-28		0.0646	[0.053-0.076] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	2E-14		0.195656	[0.15-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	1E-13		0.190146	[0.14-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	1E-12		0.182393	[0.13-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	1E-12		0.180683	[0.13-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	6E-24		0.255688	[0.21-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	8E-14		0.188429	[0.14-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	1E-11		0.163577	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64315861	64315862	rs12879641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12879641-T	NR	2E-21		0.231992	[0.18-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64316179	64316180	rs138410811	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs138410811-G	NR	2E-24		0.082	[0.066-0.098] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64319688	64319689	rs143315154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs143315154-G	NR	2E-24		0.0991	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	2E-10		0.150763	[0.1-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	1E-29		0.229483	[0.19-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	2E-10		0.152181	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	2E-32		0.242873	[0.2-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	9E-26		0.21374	[0.17-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	5E-26		0.214165	[0.17-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	7E-60		0.329145	[0.29-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	3E-26		0.168353	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	4E-30		0.228783	[0.19-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	2E-18		0.176204	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	3E-24		0.194787	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	3E-15		0.163394	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	5E-15		0.159024	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64322063	64322064	rs35168922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35168922-G	NR	6E-51		0.290796	[0.25-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64326974	64326975	rs118024635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs118024635-T	NR	8E-28		0.068	[0.056-0.08] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64330195	64330196	rs954730	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs954730-A	NR	1E-12		0.0885447	[0.064-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64332487	64332488	rs144245540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs144245540-G	NR	2E-24		0.099	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64334877	64334878	rs12887573	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs12887573-T	0.0875	3E-9	(HexCer d16:1/22:0)	0.2046	[0.14-0.27] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64334877	64334878	rs12887573	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs12887573-T	0.0875	1E-8	(Hex2Cer d16:1/16:0)	0.1755	[0.12-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	3E-12		0.177958	[0.13-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	4E-36		0.273607	[0.23-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	3E-12		0.179227	[0.13-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	1E-39		0.289094	[0.25-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	2E-30		0.250471	[0.21-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	5E-31		0.252242	[0.21-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	1E-71		0.387639	[0.35-0.43] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	8E-30		0.193617	[0.16-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	1E-35		0.268859	[0.23-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	7E-21		0.202489	[0.16-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	3E-29		0.23101	[0.19-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	3E-17		0.187823	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	3E-16		0.178149	[0.14-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64336629	64336630	rs12878037	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12878037-G	NR	2E-57		0.33237	[0.29-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64339364	64339365	rs149809141	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs149809141-A	NR	5E-24		0.1206	[0.097-0.144] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64339766	64339767	rs79864379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs79864379-G	NR	5E-10		0.0754	[0.052-0.099] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64340343	64340344	rs112697414	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs112697414-T	NR	5E-30		0.0804	[0.066-0.094] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	1E-19		0.105342	[0.083-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	1E-18		0.102961	[0.08-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	2E-11		0.0783648	[0.056-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	4E-17		0.0974029	[0.075-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	3E-28		0.126597	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	1E-12		0.0647026	[0.047-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	2E-17		0.0969414	[0.075-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	1E-16		0.0905392	[0.069-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64340876	64340877	rs8016321	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8016321-A	NR	2E-27		0.120095	[0.098-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64341762	64341763	rs34978076	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs34978076-A	0.0981	8E-12	(S1P d16:1)	0.1549	[0.11-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
1075	chr14	64342741	64342741	rs35414672	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs35414672-G	0.912	1E-9	(HexCer d16:1/16:0)	0.1913	[0.13-0.25] unit decrease	Illumina [~ 47000000] (imputed)	N
1075	chr14	64343702	64343703	rs4902250	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4902250-T	NR	2E-11		0.035	[0.025-0.045] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64346189	64346190	rs4459477	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs4459477-T	NR	1E-11		0.0552	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64349594	64349595	rs66684280	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs66684280-A	NR	2E-10		0.0559	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64350774	64350775	rs8023195	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8023195-T	NR	5E-10		0.0455	[0.031-0.06] unit increase	Illumina [6720657] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-14		0.163243	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	6E-45		0.256718	[0.22-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	3E-10		0.132086	[0.091-0.173] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	1E-14		0.16658	[0.12-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	9E-48		0.26669	[0.23-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	1E-37		0.234565	[0.2-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	5E-13		0.133864	[0.098-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	3E-36		0.228953	[0.19-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-90		0.365352	[0.33-0.4] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34561759-C	NR	2E-12		0.0382	[0.028-0.049] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-12		0.0671	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-33		0.172271	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	8E-43		0.247147	[0.21-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	6E-20		0.16545	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-33		0.207737	[0.17-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	1E-16		0.154375	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	2E-16		0.149903	[0.11-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
1075	chr14	64351683	64351684	rs34561759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs34561759-A	NR	5E-76		0.320943	[0.29-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs11158519-G	NR	4E-31		0.1376	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	3E-9	(Cer d16:1/24:0)	0.1758	[0.12-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	3E-11	(SM d16:1/18:0)	0.1548	[0.11-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	2E-9	(SM d16:1/20:0)	0.1323	[0.088-0.177] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	2E-8	(SM d16:1/24:1)	0.1275	[0.084-0.171] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	2E-10	(Cer d16:1/16:0)	0.1511	[0.1-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	1E-8	(SM d16:1/22:0)	0.1347	[0.087-0.182] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	14q23.2	SGPP1	rs11158519-A	0.119	1E-17	(SM d16:1/16:0)	0.1897	[0.15-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs11158519-A	NR	7E-9	(SM(34:0;2))	0.2843	[0.19-0.38] unit decrease	Illumina [~ 9300000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs11158519-A	NR	1E-19	(SM(32:1;2))	0.4355	[0.34-0.53] unit increase	Illumina [~ 9300000] (imputed)	N
1076	chr14	64364584	64364585	rs11158519	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	SGPP1	rs11158519-?	NR	3E-10	(SM 14:0)	0.30975968	[0.21-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1076	chr14	64382349	64382350	rs12879919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12879919-A	NR	6E-26		0.0942	[0.077-0.112] unit decrease	Illumina [6720657] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	4E-34		0.185172	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	1E-35		0.190254	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	9E-29		0.169476	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	5E-28		0.166609	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	2E-64		0.255642	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8007889-T	NR	5E-10		0.0363	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	2E-23		0.118163	[0.095-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	3E-33		0.180129	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	2E-15		0.11963	[0.09-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	1E-25		0.149767	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	5E-14		0.117033	[0.087-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	7E-13		0.109125	[0.079-0.139] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64386451	64386452	rs8007889	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs8007889-C	NR	2E-53		0.222588	[0.19-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64386453	64386454	rs8007892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs8007892-G	NR	5E-10		0.0363	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1076	chr14	64387467	64387468	rs12889954	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q23.2		rs12889954-C	NR	6E-26		0.1324	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1076	chr14	64390029	64390030	rs10873172	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	14q23.2	SYNE2	rs10873172-G	0.289806	6E-13				Affymetrix, Illumina [NR] (imputed)	N
1076	chr14	64390029	64390030	rs10873172	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	14q23.2	SYNE2	rs10873172-G	0.289806	6E-27				Affymetrix, Illumina [NR] (imputed)	N
1076	chr14	64390029	64390030	rs10873172	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	14q23.2	SYNE2	rs10873172-?	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
1076	chr14	64390029	64390030	rs10873172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q23.2		rs10873172-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1076	chr14	64390029	64390030	rs10873172	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q23.2	SYNE2	rs10873172-G	0.2816	6E-15		1.068	NR	Affymetrix [9154080] (imputed)	N
1076	chr14	64403003	64403004	rs12878653	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	14q23.2	SYNE2	rs12878653-G	0.287919	3E-14		1.0372136	NR	Affymetrix [~ 9600000] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	8E-14		0.0876718	[0.065-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	5E-13		0.0852385	[0.062-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	7E-11		0.0764435	[0.053-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	1E-22		0.113972	[0.091-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	6E-13		0.0834693	[0.061-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	2E-10		0.0708102	[0.049-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64406689	64406690	rs4902258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4902258-A	NR	2E-23		0.111652	[0.09-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64409312	64409313	rs2357176	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	14q23.2	SYNE2	rs2357176-?	NR	4E-8				Affymetrix, Illumina [7850345] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	2E-35		0.207672	[0.17-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	2E-37		0.215179	[0.18-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	2E-27		0.181977	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	1E-11		0.114426	[0.081-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	2E-30		0.191591	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	4E-71		0.295854	[0.26-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	1E-26		0.139236	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	5E-34		0.200746	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	1E-18		0.146186	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	4E-29		0.176465	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	4E-17		0.143594	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	5E-17		0.140156	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64414679	64414680	rs4476102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4476102-T	NR	2E-60		0.261267	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	3E-13		0.0856584	[0.063-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	1E-12		0.0835756	[0.06-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	8E-11		0.0759128	[0.053-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	6E-22		0.111905	[0.089-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	2E-12		0.0812359	[0.059-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	2E-10		0.0701171	[0.048-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64432569	64432570	rs945029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs945029-G	NR	2E-22		0.109077	[0.087-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64457637	64457638	rs1255908	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q23.2	SYNE2	rs1255908-T	0.69	6E-14		0.52	[0.38-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1076	chr14	64457637	64457638	rs1255908	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q23.2	SYNE2	rs1255908-T	0.692	8E-14		0.5374	[0.4-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1076	chr14	64465350	64465351	rs8015210	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.2	ESR2	rs8015210-?	NR	1E-8	(SM 14:0)	0.37452403	[0.25-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
1076	chr14	64467650	64467651	rs35435882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35435882-G	NR	2E-11		0.159922	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64467650	64467651	rs35435882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs35435882-G	NR	2E-11		0.153753	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64467726	64467727	rs17824268	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.6612..superpathway.of.tetrahydrofolate.biosynthesis)	7,738 European ancestry individuals	NA	14q23.2		rs17824268-T	0.922465075237582	3E-8		0.2074471	[0.13-0.28] unit decrease	Illumina [5584686] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	3E-11		0.169672	[0.12-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	5E-35		0.270528	[0.23-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	2E-11		0.171657	[0.12-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	9E-39		0.287056	[0.24-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	1E-28		0.244004	[0.2-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	5E-29		0.244655	[0.2-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	1E-65		0.372276	[0.33-0.41] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	2E-24		0.175314	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	6E-35		0.266763	[0.22-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	7E-18		0.187082	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	9E-27		0.221258	[0.18-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	2E-14		0.171577	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	2E-15		0.173949	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1076	chr14	64469827	64469828	rs17751301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17751301-T	NR	2E-51		0.315197	[0.27-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64476679	64476680	rs7146588	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SYNE2	rs7146588-A	NR	4E-12	(SM(32:1;2))	0.2769	[0.2-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1076	chr14	64477862	64477863	rs11288088	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11288088-A	NR	4E-10		0.14008	[0.096-0.184] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64477862	64477863	rs11288088	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11288088-A	NR	3E-16		0.182311	[0.14-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1076	chr14	64477862	64477863	rs11288088	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs11288088-A	NR	2E-15		0.169926	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64498036	64498037	rs4027405	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4027405-G	NR	3E-15		0.175991	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64498036	64498037	rs4027405	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs4027405-G	NR	3E-14		0.162576	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64519034	64519035	rs1890908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1890908-A	NR	3E-21		0.229259	[0.18-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64519034	64519035	rs1890908	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1890908-A	NR	5E-18		0.200873	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64537656	64537657	rs1255964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1255964-G	NR	4E-10		0.154207	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64537656	64537657	rs1255964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1255964-G	NR	2E-21		0.231427	[0.18-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64537656	64537657	rs1255964	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs1255964-G	NR	2E-18		0.20581	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	1E-23		0.257479	[0.21-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	4E-25		0.267757	[0.22-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	4E-18		0.223628	[0.17-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	4E-20		0.235773	[0.19-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	1E-42		0.349139	[0.3-0.4] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	2E-19		0.181517	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	5E-21		0.239249	[0.19-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	3E-13		0.185789	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	1E-20		0.226129	[0.18-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	7E-11		0.171224	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	5E-11		0.169062	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
1077	chr14	64547045	64547046	rs17766178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs17766178-A	NR	7E-35		0.302111	[0.25-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64560090	64560091	rs2792205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2792205-C	NR	8E-18		0.202466	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64560090	64560091	rs2792205	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2792205-C	NR	1E-15		0.181359	[0.14-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64560091	64560092	rs2781377	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2781377-A	NR	7E-18		0.204608	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64560091	64560092	rs2781377	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs2781377-A	NR	5E-16		0.185014	[0.14-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64560091	64560092	rs2781377	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	14q23.2	SYNE2	rs2781377-?		4E-11		1.1764705	[1.15-1.27]	Illumina [87827]	N
1077	chr14	64595762	64595763	rs35852840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q23.2		rs35852840-A	NR	4E-8		0.029	[0.019-0.039] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1077	chr14	64595762	64595763	rs35852840	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q23.2	NR	rs35852840-A	0.05802	7E-9		0.002627	[0.0017-0.0036] unit increase	Affymetrix [NR] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	1E-21		0.240054	[0.19-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	3E-22		0.244994	[0.2-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	6E-16		0.203541	[0.15-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	3E-18		0.218927	[0.17-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	6E-37		0.316671	[0.27-0.37] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	1E-17		0.168201	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	9E-20		0.225655	[0.18-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	3E-18		0.205973	[0.16-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.2		rs12881815-A	NR	5E-31		0.277495	[0.23-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1077	chr14	64604594	64604595	rs12881815	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	14q23.2	SGPP1	rs12881815-A	0.0392	5E-6	(SM(34:0;2))	0.3726	[0.21-0.53] unit decrease	Illumina [~ 9300000] (imputed)	N
1078	chr14	64626958	64626959	rs148114281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.2		rs148114281-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1078	chr14	64650305	64650306	rs11846882	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	14q23.2	SYNE2	rs11846882-C	0.02	2E-7		0.32	[0.2-0.44] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1078	chr14	64656854	64656855	rs2256191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q23.2	NR	rs2256191-T	0.654644	7E-9		0.00750751	[0.0049-0.0102] unit increase	Affymetrix [16578495] (imputed)	N
1078	chr14	64663082	64663083	rs2781379	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q23.2	NR	rs2781379-T	0.650113	2E-8		0.0118666	[0.0078-0.016] unit increase	Affymetrix [16583148] (imputed)	N
1078	chr14	64674980	64674981	rs1152595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.2	Intergenic	rs1152595-T	0.5416	6E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1078	chr14	64676750	64676751	rs36215895	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	14q23.2		rs36215895-?	NR	1E-13		0.0737487	[0.053-0.094] unit decrease	NR [9800000] (imputed)	N
1078	chr14	64676750	64676751	rs36215895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	14q23.2	NR	rs36215895-T	NR	6E-11		0.0821	[0.057-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1078	chr14	64679959	64679960	rs2738413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	14q23.2		rs2738413-G	NR	3E-16		0.0764	[0.058-0.095] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1078	chr14	64679959	64679960	rs2738413	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q23.2	SYNE2, MIR548AZ, ESR2, MTHFD1	rs2738413-A	0.495	3E-31		1.08	[1.07-1.10]	Illumina [34740186] (imputed)	N
1078	chr14	64679959	64679960	rs2738413	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q23.2	SYNE2	rs2738413-A	0.48	1E-24	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1078	chr14	64679959	64679960	rs2738413	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q23.2	SYNE2	rs2738413-A	0.47	2E-29		1.08	[1.07-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1078	chr14	64680847	64680848	rs1152591	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	14q23.2	SYNE2	rs1152591-A	0.46	1E-10		1.09	[1.06-1.13]	Affymetrix, Illumina [11795432] (imputed)	N
1078	chr14	64680847	64680848	rs1152591	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	14q23.2	SYNE2	rs1152591-A	0.48	6E-13		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1078	chr14	64686206	64686207	rs915057	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	14q23.2	NR	rs915057-?		4E-8				NR [520857]	N
1078	chr14	64686206	64686207	rs915057	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	14q23.2	NR	rs915057-G	NR	2E-8		1.0204082		NR [NR] (imputed)	N
1078	chr14	64686206	64686207	rs915057	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q23.2	SYNE2, ESR2	rs915057-?		3E-9				NR [6786993] (imputed)	N
1078	chr14	64686206	64686207	rs915057	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	14q23.2	SYNE2, MIR548H1, ESR2	rs915057-G	0.58	8E-10		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1078	chr14	64687925	64687926	rs79133931	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	14q23.2	NR	rs79133931-T	0.088	1E-6		1.195	[1.11-1.28]	Affymetrix, Illumina [10186136] (imputed)	N
1078	chr14	64693384	64693385	rs2772163	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 273)	19,670 European ancestry individuals	NA	14q23.2		rs2772163-?	NR	1E-8				NR [9705931] (imputed)	N
1078	chr14	64693384	64693385	rs2772163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.2		rs2772163-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1078	chr14	64693911	64693912	rs58262369	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	14q23.2	ESR2	rs58262369-T	0.072	6E-10		1.28	[NR]	Illumina [4550396] (imputed)	N
1078	chr14	64697036	64697037	rs1152578	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	14q23.2	NR	rs1152578-C	0.5643	4E-12		1.0152284	[1.01-1.02]	NR [8098588] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q23.2		rs1256061-T	NR	6E-25		0.0167	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q23.2		rs1256061-T	NR	3E-28		0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q23.2	ESR2	rs1256061-T	0.475483	5E-25		0.022914719	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q23.2	ESR2	rs1256061-T	0.475483	6E-28		0.024399497	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q23.2	ESR2	rs1256061-T	0.475488	5E-30		0.025270645	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.464707	1E-35				Affymetrix, Illumina [24332387] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.474971	4E-33		0.022205	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.464958	4E-50				Affymetrix, Illumina [24653286] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.475101	6E-43		0.025386	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.464557	8E-50				Affymetrix, Illumina [24558453] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q23.2	NR	rs1256061-T	0.475022	1E-41		0.02502	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	14q23.2	NR	rs1256061-G	0.550652	1E-9		0.023101	[0.016-0.031] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q23.2	ESR2	rs1256061-T		2E-23		0.022	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q23.2		rs1256061-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	14q23.2	ESR2	rs1256061-T	0.4769	9E-10		0.02181115	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	14q23.2	ESR2	rs1256061-T	0.477	5E-12		0.02446817	[0.018-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1078	chr14	64703592	64703593	rs1256061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	14q23.2	ESR2	rs1256061-T	0.4769	3E-11		0.02343742	[0.017-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1078	chr14	64723524	64723525	rs12435857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q23.2	NR	rs12435857-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1078	chr14	64726502	64726503	rs7146434	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	14q23.2		rs7146434-A	0.5653	4E-7		35.309937	z score increase	NR [6814003]	N
1078	chr14	64726502	64726503	rs7146434	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q23.2	ESR2	rs7146434-?	NR	3E-11		0.013552505	[0.0096-0.0176] unit decrease	NR [7306098]	N
1079	chr14	64750232	64750233	rs6573552	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.2		rs6573552-T	0.496	1E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1079	chr14	64769073	64769074	rs2978382	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q23.3	ESR2, MTHFD1	rs2978382-T	0.5852	6E-9		1.0234712		Affymetrix [11880941] (imputed)	N
1079	chr14	64771404	64771405	rs12589834	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q23.3	NR	rs12589834-A	0.7443	2E-8		0.027699487	[0.018-0.037] unit increase	NR [NR]	N
1079	chr14	64791630	64791631	rs117171778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs117171778-T	NR	1E-15		0.281591	[0.21-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64791630	64791631	rs117171778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.3		rs117171778-T	NR	2E-10		0.177023	[0.12-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64791630	64791631	rs117171778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs117171778-T	NR	2E-14		0.258878	[0.19-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	6E-16		0.197676	[0.15-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	3E-16		0.201325	[0.15-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	4E-11		0.161593	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	5E-12		0.168455	[0.12-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	3E-26		0.25745	[0.21-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	1E-11		0.130212	[0.093-0.168] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	2E-14		0.185618	[0.14-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	5E-12		0.159641	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1079	chr14	64839006	64839007	rs12884767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	14q23.3		rs12884767-C	NR	5E-21		0.219198	[0.17-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1080	chr14	64881406	64881407	rs201368489	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q23.3	Intergenic	rs201368489-?		4E-6		2.8	[1.81-4.34]	Illumina [7645193] (imputed)	N
1080	chr14	64882379	64882380	rs1950902	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	14q23.3	MTHFD1	rs1950902-?	0.37	1E-7	(male)	1.595	[1.34-1.90]	Illumina [5595657] (imputed)	N
1080	chr14	64898075	64898076	rs59397130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q23.3	NR	rs59397130-G	0.02626099999999998	2E-10		0.056163	[0.039-0.073] unit increase	Affymetrix [16580851] (imputed)	N
1080	chr14	64899054	64899055	rs10498514	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	14q23.3	MTHFD1	rs10498514-?	0.01817	8E-7	(SWM strategy)			Illumina [475971]	N
1080	chr14	64901727	64901728	rs3783727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q23.3		rs3783727-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1080	chr14	64923165	64923166	rs6573559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.3		rs6573559-T	0.3152	3E-12		0.0105	[0.0076-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1080	chr14	64926096	64926097	rs2281603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	14q23.3	ZBTB25, MTHFD1	rs2281603-C	0.2428	2E-12		0.02984291	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1080	chr14	64930345	64930345	rs199975542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q23.3	ZBTB25	rs199975542-CA	0.320089	2E-26		0.025334708	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr14	64937032	64937033	rs3742608	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.3	Intergenic	rs3742608-C	0.3161	9E-12	(MTAG)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1080	chr14	64943220	64943221	rs68041326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q23.3		rs68041326-T	NR	1E-26		0.0239	[0.02-0.028] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1080	chr14	64947619	64947620	rs35262226	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	14q23.3	NR	rs35262226-A	0.1073	1E-6		0.7513	[0.45-1.05] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1080	chr14	64949195	64949196	rs10147522	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q23.3	ZBTB25	rs10147522-A	0.654389	2E-11		0.0131662	[0.0093-0.017] unit decrease	NR [13737936] (imputed)	N
1080	chr14	64953258	64953259	rs11626222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11626222-A	0.315522	2E-43				Affymetrix, Illumina [23472807] (imputed)	N
1080	chr14	64960562	64960562	rs34544996	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	14q23.3	ZBTB25	rs34544996-CA	0.2757	2E-9		0.02567833	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1080	chr14	64962294	64962295	rs28730549	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	14q23.3		rs28730549-A	0.6679	1E-6		33.08993	z score increase	NR [6814003]	N
1080	chr14	64974202	64974203	rs1453007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q23.3		rs1453007-A	0.6851	2E-12	(conditional-joint)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1080	chr14	64975860	64975861	rs1966865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q23.3	NR	rs1966865-A	0.317295	1E-40		0.027118	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1080	chr14	64977052	64977053	rs11848179	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	14q23.3		rs11848179-A	0.681	2E-16				Affymetrix [10369434] (imputed)	N
1080	chr14	64977052	64977053	rs11848179	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	14q23.3		rs11848179-A	0.681	2E-14				Affymetrix [10369434] (imputed)	N
1080	chr14	64977052	64977053	rs11848179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q23.3	ZBTB1	rs11848179-G	0.318144	5E-19		0.021211982	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr14	64977052	64977053	rs11848179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q23.3	ZBTB1	rs11848179-G	0.318118	8E-35		0.02930178	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr14	64977320	64977321	rs11625265	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	14q23.3		rs11625265-G	0.3157	7E-9		1.07		Affymetrix, Illumina [9397031] (imputed)	N
1080	chr14	64982939	64982940	rs4902288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.3		rs4902288-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1080	chr14	64983476	64983477	rs3783724	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	14q23.3		rs3783724-G	0.769	9E-11				Affymetrix [10369434] (imputed)	N
1080	chr14	65011210	65011210	rs34019502	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q23.3	HSPA2	rs34019502-CT	0.6757	3E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1081	chr14	65023569	65023570	rs10132033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q23.3		rs10132033-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1081	chr14	65081382	65081383	rs561271432	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q23.3		rs561271432-C	0.0027868	5E-6		0.29633	[0.17-0.42] unit decrease	Affymetrix [15580782] (imputed)	N
1081	chr14	65105858	65105859	rs11158547	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	14q23.3	PPP1R36-PLEKHG3	rs11158547-C	0.18	2E-6		0.0081	NR unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1081	chr14	65105858	65105859	rs11158547	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	14q23.3	PPP1R36-PLEKHG3	rs11158547-C	0.18	2E-8	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
1081	chr14	65113767	65113768	rs28761289	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q23.3	PPP1R36, PLEKHG3	rs28761289-A	0.83	5E-11		0.0075	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1081	chr14	65113767	65113768	rs28761289	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q23.3	PPP1R36, PLEKHG3	rs28761289-A	0.83	2E-7		0.0056	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1081	chr14	65116230	65116231	rs74056359	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q23.3	PLEKHG3	rs74056359-A	0.83	3E-16		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1081	chr14	65119695	65119696	rs7148810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.3		rs7148810-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1081	chr14	65119838	65119839	rs7148864	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q23.3	NR	rs7148864-A	NR	2E-8		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1081	chr14	65119838	65119839	rs7148864	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q23.3	NR	rs7148864-A	0.796	3E-10	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1081	chr14	65119838	65119839	rs7148864	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q23.3	NR	rs7148864-A	NR	1E-8		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1081	chr14	65119838	65119839	rs7148864	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q23.3	NR	rs7148864-A	0.796	7E-10	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1081	chr14	65138374	65138375	rs1956419	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.3	NR	rs1956419-?	NR	2E-8				Affymetrix [NR]	N
1082	chr14	65154914	65154915	rs117265206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.3		rs117265206-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1082	chr14	65174585	65174586	rs229660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q23.3	PLEKHG3	rs229660-C	0.141068	4E-11		0.021564554	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65209908	65209909	rs17180132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	PLEKHG3	rs17180132-A	0.014058	4E-14		0.07326092	[0.054-0.092] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65222216	65222217	rs74058210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q23.3	NR	rs74058210-A	NR	2E-10		0.0334	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr14	65228068	65228069	rs172966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs172966-T	0.213764	1E-12		0.024949837	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65228593	65228594	rs12885036	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	14q23.3	SPTB	rs12885036-C	0.91	7E-6		1.34	[1.18-1.53]	Affymetrix, Illumina [12148595] (imputed)	N
1082	chr14	65229005	65229006	rs1499517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q23.3	NR	rs1499517-G	NR	4E-13		0.0301	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1082	chr14	65240948	65240949	rs11158559	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	SPTB	rs11158559-A	0.148	6E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1082	chr14	65240948	65240949	rs11158559	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	SPTB	rs11158559-A	0.148	1E-6	(Leptin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1082	chr14	65242222	65242223	rs867837383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.3	SPTB	rs867837383-G	2.49999999999972E-4	2E-13		0.52397543	[0.38-0.66] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65244594	65244595	rs74331120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs74331120-A	0.084396	5E-18		0.044576112	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65249814	65249815	rs6573568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs6573568-T	0.139975	8E-72		0.063534155	[0.057-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65250755	65250756	rs229635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs229635-G	0.30276	1E-35		0.040089272	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q23.3	SPTB	rs11851199-G	0.074196	5E-14		0.03259724	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q23.3	SPTB	rs11851199-G	0.074203	1E-14		0.033464856	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.3	SPTB	rs11851199-G	0.074173	1E-15		0.034167014	[0.026-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q23.3	SPTB	rs11851199-G	0.074152	8E-9		0.0317479	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q23.3	SPTB	rs11851199-G	NR	9E-10		0.0465662	[0.031-0.062] unit decrease	Affymetrix [16832071] (imputed)	N
1082	chr14	65256187	65256188	rs11851199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q23.3	SPTB	rs11851199-G	0.074	9E-12		0.04652189	[0.033-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr14	65260226	65260227	rs229591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs229591-G	0.359311	3E-9		0.033173375	[0.022-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65263590	65263590	rs3215645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	14q23.3	SPTB	rs3215645-CT	0.3524	2E-11		0.0244477	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr14	65265684	65265685	rs1271040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q23.3		rs1271040-G	NR	8E-27		0.0258	[0.021-0.031] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1082	chr14	65265684	65265685	rs1271040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q23.3		rs1271040-?	NR	2E-73				NR [~ 8900000] (imputed)	N
1082	chr14	65266532	65266533	rs141060172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs141060172-A	0.00644299999999998	4E-13		0.102370545	[0.075-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr14	65268604	65268605	rs2273475	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	14q23.3	SPTB	rs2273475-A	0.898	2E-9		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1082	chr14	65268604	65268605	rs2273475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.3	SPTB	rs2273475-G	0.097075	2E-13		0.031682387	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65272856	65272857	rs2285005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs2285005-A	0.341125	1E-215		0.103639595	[0.097-0.11] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65272856	65272857	rs2285005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs2285005-A	0.341027	3E-78		0.120268665	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65272856	65272857	rs2285005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q23.3	SPTB	rs2285005-A	0.341181	7E-9		0.013530485	[0.0089-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr14	65272856	65272857	rs2285005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q23.3	NR	rs2285005-A	0.343046	1E-69		0.035963	[0.032-0.04] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1083	chr14	65280075	65280076	rs1741464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	14q23.3	SPTB	rs1741464-A	0.2895	3E-21		0.03759359	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr14	65280075	65280076	rs1741464	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	14q23.3	SPTB	rs1741464-A	0.2895	5E-21		0.03741142	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1083	chr14	65280823	65280824	rs17767662	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q23.3	SPTB	rs17767662-T	NR	3E-26		0.0442157	[0.036-0.053] unit increase	Affymetrix [16832071] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311109	3E-58		0.03928328	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311111	7E-59		0.039541643	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311083	7E-28		0.030072603	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311168	3E-27		0.0265723	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311122	3E-32		0.028595457	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q23.3	SPTB	rs229674-C	0.311132	8E-34		0.029294083	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65281471	65281472	rs229674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs229674-G	0.670517	6E-69				Affymetrix, Illumina [22063850] (imputed)	N
1083	chr14	65282306	65282307	rs75944157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q23.3	NR	rs75944157-A	NR	3E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr14	65282306	65282307	rs75944157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q23.3	NR	rs75944157-A	NR	1E-18		0.0366	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1083	chr14	65282841	65282842	rs74056034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs74056034-C	0.01678	3E-46		0.13286798	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65282952	65282953	rs17826201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs17826201-A	0.016738	2E-32		0.113856904	[0.095-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65283675	65283676	rs2285002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q23.3	SPTB	rs2285002-A	0.2839	1E-21		0.03807926	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1083	chr14	65292144	65292145	rs116988415	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	14q23.3	SPTB, PLEKHG3, CHURC1, CHURC1-FNTB	rs116988415-T	NR	4E-6	(daytime resting)	1.033	[0.59-1.47] unit decrease	Affymetrix [7141204] (imputed)	N
1083	chr14	65301791	65301792	rs423927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs423927-C	0.139487	7E-19		0.03543651	[0.028-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65301977	65301978	rs438035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs438035-C	0.234831	2E-18		0.03229274	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65319360	65319361	rs35955841	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	14q23.3	NR	rs35955841-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1083	chr14	65345669	65345670	rs7141985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	SPTB	rs7141985-T	0.9143566	3E-20		0.039819468	[0.031-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65347115	65347116	rs147598882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.3		rs147598882-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1083	chr14	65349805	65349806	rs79662192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q23.3	NR	rs79662192-A	NR	6E-11		0.0399	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1083	chr14	65349970	65349971	rs1003370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	SPTB	rs1003370-G	0.9797729	1E-17		0.06885316	[0.053-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr14	65354032	65354033	rs1957429	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q23.3	SPTB	rs1957429-T	0.126	6E-9	(Females)	0.444266	[0.3-0.59] unit decrease	Illumina [~ 6600000] (imputed)	N
1083	chr14	65398604	65398605	rs184075187	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.3	NR	rs184075187-A	0.0122	6E-9	(VTN)	0.08563	NR unit increase	Illumina [1671387] (imputed)	N
1083	chr14	65402507	65402508	rs370120147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, CHURC1, FNTB	rs370120147-G	0.027116	6E-10		0.049193826	[0.034-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65406278	65406279	rs148421193	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	14q23.3		rs148421193-?	NR	5E-6		2.91071	[2.45-3.37]	NR [673172]	N
1084	chr14	65421273	65421274	rs2898885	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q23.3	NA	rs2898885-T	0.809	9E-10		0.0138	[0.0093-0.0183] unit decrease	NR [~ 27400000] (imputed)	N
1084	chr14	65422795	65422796	rs4902352	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	14q23.3		rs4902352-G	0.19	3E-7		0.48	unit increase	Affymetrix [NR] (imputed)	N
1084	chr14	65422795	65422796	rs4902352	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	14q23.3		rs4902352-G	0.19	4E-6		0.62	unit increase	Affymetrix [NR] (imputed)	N
1084	chr14	65440123	65440124	rs150546699	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	14q23.3	CHURC1, FNTB	rs150546699-G	0.987	6E-7	(men)	0.120874	[0.073-0.168] unit increase	Illumina [13520550] (imputed)	N
1084	chr14	65443435	65443436	rs61160081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q23.3		rs61160081-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1084	chr14	65472240	65472241	rs11621325	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	14q23.3		rs11621325-?	0.4278	7E-8		0.207	[0.13-0.28] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1084	chr14	65472240	65472241	rs11621325	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	14q23.3		rs11621325-?	0.4278	5E-11		0.0967	[0.068-0.126] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1084	chr14	65472240	65472241	rs11621325	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	14q23.3		rs11621325-?	0.421	1E-6		0.1174	[0.07-0.165] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1084	chr14	65473195	65473196	rs7148590	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	14q23.3	MAX, FNTB	rs7148590-?	NR	1E-7		0.14	[0.089-0.191] unit increase	Illumina [> 2500000] (imputed)	N
1084	chr14	65475539	65475540	rs4466998	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	14q23.3	FNTB	rs4466998-A	NR	5E-8		0.0	[0.001-0.003] fl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1084	chr14	65478947	65478948	rs2296322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q23.3	FNTB	rs2296322-G	0.142812	6E-12		0.022188606	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65480043	65480043	rs11413261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11413261-C	0.508275	8E-35		0.0373845	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65481543	65481544	rs56197624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs56197624-A	0.142069	4E-16		0.0470444	[0.041-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q23.3		rs11627485-C	NR	1E-27		0.0253	[0.021-0.03] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q23.3		rs11627485-C	NR	2E-94		0.0492	[0.044-0.054] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	14q23.3		rs11627485-C	NR	3E-34		0.0291	[0.024-0.034] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q23.3		rs11627485-C	NR	1E-138		0.0596	[0.055-0.064] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q23.3		rs11627485-T	0.552	2E-17				Affymetrix [10369434] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.448426	2E-24		0.023195356	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447413	1E-22		0.023089064	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447402	3E-16		0.019487618	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.448427	2E-23		0.02256918	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447583	1E-12		0.0546285	[0.051-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447547	2E-140		0.057864096	[0.053-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447319	1E-14		0.017422203	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447344	2E-30		0.025827825	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627485-C	0.447345	2E-22		0.02191976	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.394162	3E-41				Affymetrix, Illumina [24588908] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.442332	8E-40		0.02442	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11627485-T	0.562492	2E-37				Affymetrix, Illumina [17210439] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q23.3	NR	rs11627485-T	0.553779	9E-39		0.025256	[0.021-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.400404	2E-178				Affymetrix, Illumina [24246363] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.442473	2E-178		0.052172	[0.049-0.056] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.397969	1E-83				Affymetrix, Illumina [21126107] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.445152	4E-79		0.03799	[0.034-0.042] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.399654	5E-244				Affymetrix, Illumina [20825802] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q23.3	NR	rs11627485-C	0.445393	4E-241		0.064381	[0.061-0.068] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.3		rs11627485-?	NR	6E-211				NR [~ 8900000] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	14q23.3	FNTB, CHURC1-FNTB, MAX	rs11627485-C	0.4468	2E-14		0.02750796	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q23.3	FNTB, CHURC1-FNTB, MAX	rs11627485-C	0.4479	7E-12		0.02510218	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q23.3	FNTB, CHURC1-FNTB, MAX	rs11627485-C	0.4468	4E-52		0.05422329	[0.047-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	14q23.3	FNTB, CHURC1-FNTB, MAX	rs11627485-C	0.4468	9E-26		0.03672477	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr14	65487693	65487694	rs11627485	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q23.3	FNTB, CHURC1-FNTB, MAX	rs11627485-C	0.4469	2E-74		0.06525411	[0.058-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1084	chr14	65487795	65487796	rs11627531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627531-C	0.512201	4E-25		0.023484468	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65487795	65487796	rs11627531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs11627531-C	0.5122	4E-15		0.01778489	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65497523	65497524	rs66817747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs66817747-A	0.204769	4E-27		0.030486813	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65502001	65502002	rs11850984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q23.3		rs11850984-C	0.279549	9E-9		0.0212067	[0.014-0.028] unit decrease	Illumina [13478928] (imputed)	N
1084	chr14	65502238	65502239	rs7155454	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	14q23.3	FNTB	rs7155454-?	NR	1E-8				NR [2500000] (imputed)	N
1084	chr14	65502238	65502239	rs7155454	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	14q23.3	FNTB	rs7155454-?	NR	1E-10				NR [2500000] (imputed)	N
1084	chr14	65502238	65502239	rs7155454	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q23.3	MAX, FNTB	rs7155454-A	0.51	2E-12	(EA, MCH)	0.002	[-0.00584-0.00984] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1084	chr14	65502270	65502271	rs7155275	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q23.3	CHURC1-FNTB, FNTB, MAX	rs7155275-C		1E-11		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1084	chr14	65505644	65505645	rs55918235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs55918235-C	0.138803	3E-26		0.0574213	[0.052-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65506974	65506975	rs76772442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs76772442-G	0.141515	4E-11		0.0211814	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65506974	65506975	rs76772442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs76772442-G	0.141707	8E-24				Affymetrix, Illumina [24653286] (imputed)	N
1084	chr14	65509877	65509878	rs11628273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs11628273-T	0.538439	3E-43				Affymetrix, Illumina [24332387] (imputed)	N
1084	chr14	65509877	65509878	rs11628273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q23.3	NR	rs11628273-T	0.510339	3E-40		0.024702	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1084	chr14	65509877	65509878	rs11628273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q23.3		rs11628273-?	NR	3E-36				NR [~ 8900000] (imputed)	N
1084	chr14	65510385	65510386	rs12587257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q23.3		rs12587257-G	NR	1E-25		0.0182	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1084	chr14	65513570	65513570	rs71444682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs71444682-GCTT	0.512243	4E-34		0.02724361	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1084	chr14	65520245	65520246	rs2296316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q23.3		rs2296316-C	NR	1E-35		0.0172	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1084	chr14	65520245	65520246	rs2296316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.3		rs2296316-?	NR	1E-59				NR [~ 8900000] (imputed)	N
1084	chr14	65520615	65520616	rs7158239	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	14q23.3	CHURC1-FNTB, FNTB, MAX	rs7158239-?	NR	2E-11		0.02854	[0.02-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1084	chr14	65521157	65521158	rs73270847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q23.3		rs73270847-C	NR	7E-11		0.0318	[0.022-0.041] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1084	chr14	65521157	65521158	rs73270847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs73270847-C	0.037411	7E-11		0.03816671	[0.027-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65522222	65522223	rs8011585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q23.3	CHURC1-FNTB, MAX, FNTB	rs8011585-A	0.39812	4E-10		0.014179016	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65522222	65522223	rs8011585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q23.3	NR	rs8011585-A	0.396721	2E-14		0.015701	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1084	chr14	65522994	65522995	rs76688468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q23.3		rs76688468-G	NR	3E-9		0.0321	[0.022-0.043] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1084	chr14	65523294	65523295	rs28886684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q23.3		rs28886684-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1084	chr14	65533554	65533555	rs55896900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q23.3	MAX	rs55896900-G	0.085136	2E-10		0.025262957	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1084	chr14	65534083	65534084	rs7145112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	14q23.3	NR	rs7145112-A	0.490019	2E-10		0.025522	[0.018-0.033] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1084	chr14	65535390	65535391	rs7152277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs7152277-C	0.415892	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1085	chr14	65538103	65538104	rs11626720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	14q23.3		rs11626720-T	0.297087	3E-11		0.0262624	[0.019-0.034] unit increase	Illumina [13477028] (imputed)	N
1085	chr14	65538103	65538104	rs11626720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	14q23.3		rs11626720-T	0.297523	5E-11		0.0261738	[0.018-0.034] unit increase	Illumina [13476299] (imputed)	N
1085	chr14	65538130	65538131	rs7147987	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q23.3	MAX	rs7147987-A	0.5387	1E-23		0.0191	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1085	chr14	65542476	65542477	rs4902358	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q23.3	MAX	rs4902358-?	NR	8E-10		0.020413036	[0.014-0.027] unit decrease	Illumina [27896057] (imputed)	N
1085	chr14	65544366	65544367	rs762810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q23.3	MAX	rs762810-A	0.361013	6E-10		0.014307299	[0.0098-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr14	65550081	65550082	rs942626	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAX	5,365 Icelandic ancestry individuals	NA	14q23.3		rs942626-T	0.4158	5E-12		0.129648	[0.093-0.166] unit decrease	Illumina [7506463] (imputed)	N
1085	chr14	65554637	65554638	rs55658675	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	14q23.3	NR	rs55658675-C	NR	5E-8		0.72	unit increase	Affymetrix [14661600] (imputed)	N
1085	chr14	65555470	65555471	rs10143198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q23.3	MAX, RP11-840I19.3	rs10143198-T	0.420488	9E-12		0.0373148	[0.033-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr14	65555757	65555758	rs8181939	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.3	FNTB	rs8181939-?	NR	7E-6	(alpha ketoglutarate)	0.19138616	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1085	chr14	65564702	65564703	rs1271582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q23.3		rs1271582-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1085	chr14	65566260	65566261	rs1007914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q23.3	MAX	rs1007914-C	0.61734375	3E-6	(MAX, 12411_60_3)	0.11961393	[0.07-0.169] unit increase	Illumina [> 1000000] (imputed)	N
1085	chr14	65587771	65587772	rs191245241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q23.3		rs191245241-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1085	chr14	65604727	65604728	rs17102423	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	MAX	rs17102423-A	0.2	4E-7	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1085	chr14	65606247	65606248	rs61987429	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q23.3	NR	rs61987429-C	0.64904	9E-10		0.0174663	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1085	chr14	65611504	65611505	rs78853790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q23.3		rs78853790-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1085	chr14	65613887	65613888	rs4325479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q23.3		rs4325479-T	0.299228	8E-10		0.015111275	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr14	65645249	65645250	rs7158173	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	14q23.3	MAX	rs7158173-?	0.48	4E-6	(waist circumference)	0.11	[0.06-0.16] mm decrease	Illumina [316730]	N
1085	chr14	65658240	65658241	rs12897052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.3	FNTB	rs12897052-?	NR	3E-6	(CE 20:4)	0.30083588	[0.18-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
1085	chr14	65659475	65659476	rs76358961	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	14q23.3	LINC02324	rs76358961-?		1E-6				NR [7405822] (imputed)	N
1086	chr14	65676005	65676006	rs7141109	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q23.3	FNTB	rs7141109-?	NR	6E-6	(CE 20:3)	0.30126923	[0.17-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
1086	chr14	65697139	65697140	rs61989804	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs (fetal genetic effect)	764 fetuses	NA	14q23.3	intergenic	rs61989804-?		1E-7	(PCB138/158)	0.38	[0.24-0.52] unit decrease	Affymetrix [622716]	N
1086	chr14	65713894	65713895	rs116844769	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q23.3		rs116844769-A	0.06631	2E-8		0.2839	[0.18-0.38] unit increase	Illumina [18238311] (imputed)	N
1086	chr14	65720578	65720579	rs76734026	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	14q23.3	SPTB	rs76734026-A	0.072	8E-6		0.316646	[0.18-0.45] unit increase	Illumina [~ 6600000] (imputed)	N
1086	chr14	65728315	65728316	rs899963	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.3	NR	rs899963-?	NR	1E-18				Affymetrix [NR]	N
1086	chr14	65734599	65734600	rs72712459	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs72712459-A	0.3201	1E-9	(IgG1_G1FN/IgG1_G1N)	0.2567	[0.17-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65747758	65747759	rs1256531	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	14q23.3	intergenic	rs1256531-G	0.234	4E-6		0.09	[NR] unit increase	Illumina [948658]	N
1086	chr14	65758641	65758642	rs7159888	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	NR	rs7159888-G	0.550559034728406	2E-6	(IGP62)	0.1465	[0.086-0.207] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65758641	65758642	rs7159888	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs7159888-A	0.45	2E-22	(A2)	0.26108062	[0.21-0.31] (zscore) increase	Illumina [NR]	N
1086	chr14	65758641	65758642	rs7159888	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs7159888-A	0.45	2E-21	(GP1)	0.25197738	[0.2-0.3] (zscore) increase	Illumina [NR]	N
1086	chr14	65758641	65758642	rs7159888	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs7159888-A	0.44	9E-11	(GP1, men)	0.26022577	[0.18-0.34] (zscore) increase	Illumina [NR]	N
1086	chr14	65758641	65758642	rs7159888	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	14q23.3	FUT8	rs7159888-A	0.44	3E-18	(DG1)	0.26	[0.20-0.32] unit increase	Illumina [~ 300000]	N
1086	chr14	65775694	65775695	rs11847263	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	14q23.3	FUT8	rs11847263-T	0.647	1E-58		0.283	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	9E-21	(IgG1 FG1n total/G1n)	0.3754	[0.3-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	9E-16	(IgG1_G1N)	0.3208	[0.24-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	7E-17	(IgG1 BG1n/G1n)	0.3328	[0.25-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	7E-15	(IgG1_G2)	0.3079	[0.23-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	6E-20	(IgG1_G1)	0.3671	[0.29-0.45] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	5E-20	(IgG1_G0)	0.366	[0.29-0.44] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	4E-23	(IgG1 FBn/Bn total)	0.3998	[0.32-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	3E-20	(IgG1_G0n)	0.3697	[0.29-0.45] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	3E-20	(IgG1 Fn total)	0.3703	[0.29-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	3E-17	(IgG1 Bn/Fn total)	0.3382	[0.26-0.42] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	3E-15	(IgG1 Fn/Bn)	0.3144	[0.24-0.39] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	3E-14	(IgG1_G2n)	0.2997	[0.22-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-24	(IgG1_G1FN/IgG1_G1N)	0.4091	[0.33-0.49] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-20	(IgG1_G2F/IgG1_G2)	0.3686	[0.29-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-20	(IgG1 Fucosylation)	0.3718	[0.29-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-20	(IgG1 FG2n total/G2n)	0.3708	[0.29-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-19	(IgG1_G1F/IgG1_G1)	0.362	[0.28-0.44] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-16	(IgG1 Bn)	0.3305	[0.25-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-15	(IgG1_G1Nn)	0.3155	[0.24-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	2E-12	(IgG1 FG2n/G2n)	0.2798	[0.2-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	1E-20	(IgG1_G0FN/IgG1_G0N)	0.375	[0.3-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	1E-19	(IgG1_G1n)	0.3647	[0.29-0.44] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	1E-18	(IgG1 FG0n total/G0n)	0.3541	[0.28-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11847263-G	0.3303	1E-17	(IgG1_G0F/IgG1_G0)	0.3434	[0.26-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	5E-15				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monosialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	6E-15				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	1E-17				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	1E-15				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	6E-10				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	3E-16				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q23.3	FUT8	rs11847263-G	0.35	3E-15				Illumina [NR]	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	NR	rs11847263-G	0.393307344254937	2E-13	(IGP46)	0.2328	[0.17-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.394040135631155	5E-15	(IGP6)	0.2482	[0.19-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.394003751805054	6E-6	(IGP77)	0.1425	[0.081-0.204] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393717723953695	1E-10	(IGP65)	0.2023	[0.14-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393668566146993	3E-8	(IGP63)	0.1747	[0.11-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393609222420723	2E-6	(IGP21)	0.1501	[0.089-0.211] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.39336899642538	2E-19	(IGP58)	0.2852	[0.22-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393211372416891	3E-14	(IGP60)	0.2402	[0.18-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393162371823451	3E-17	(IGP61)	0.2676	[0.21-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.393000049217002	1E-22	(IGP59)	0.3124	[0.25-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.392332365307037	2E-13	(IGP51)	0.2323	[0.17-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.391757509628303	7E-14	(IGP11)	0.2381	[0.18-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.391170597752809	3E-21	(IGP42)	0.3025	[0.24-0.37] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65775694	65775695	rs11847263	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q23.3	FUT8	rs11847263-G	0.390847885290148	8E-20	(IGP2)	0.2915	[0.23-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1086	chr14	65781233	65781234	rs10134589	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs10134589-T	0.1676	5E-18	(IgG1_G0Nn)	0.4289	[0.33-0.53] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65781233	65781234	rs10134589	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs10134589-T	0.1676	4E-10	(IgG1_G1N(20)/IgG2_G1N(20))	0.2982	[0.21-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65781233	65781234	rs10134589	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs10134589-T	0.1676	2E-16	(IgG1 BG0n/G0n)	0.4089	[0.31-0.51] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65781233	65781234	rs10134589	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs10134589-T	0.1676	1E-17	(IgG1_G0N)	0.4224	[0.33-0.52] unit increase	Affymetrix [up to 18185628] (imputed)	N
1086	chr14	65783803	65783804	rs73278043	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Tanning	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	14q23.3	NR	rs73278043-?	NR	1E-6				Illumina [at least 241929] (imputed)	N
1086	chr14	65787940	65787941	rs6573604	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs6573604-G	0.19	2E-12	(DG1, men)	0.35109982	[0.25-0.45] (zscore) increase	Illumina [NR]	N
1086	chr14	65787940	65787941	rs6573604	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs6573604-G	0.19	2E-12	(A2, men)	0.3526623	[0.25-0.45] (zscore) increase	Illumina [NR]	N
1086	chr14	65793223	65793224	rs4902389	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q23.3	NR	rs4902389-G	0.83671875	4E-719	(HTATIP2, 7753_21_3)	1.5322057	[1.49-1.57] unit decrease	Illumina [> 1000000] (imputed)	N
1086	chr14	65793223	65793224	rs4902389	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q23.3	NR	rs4902389-G	0.83671875	4E-10	(CTSA, 3179_51_2)	0.20683612	[0.14-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1086	chr14	65793223	65793224	rs4902389	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q23.3	NR	rs4902389-G	0.83671875	2E-690	(FUT8, 8244_16_3)	1.5080132	[1.47-1.55] unit decrease	Illumina [> 1000000] (imputed)	N
1086	chr14	65796845	65796846	rs2127870	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q23.3	FUT8	rs2127870-C	0.785	3E-123	(Oxidoreductase HTATIP2, HTATIP2.7753.21.3)	0.67	[0.61-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1086	chr14	65796845	65796846	rs2127870	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q23.3	FUT8	rs2127870-C	0.785	1E-395	(Alpha-(1,6)-fucosyltransferase, FUT8.8244.16.3)	1.05	[1.01-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
1086	chr14	65797783	65797784	rs9635249	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF12	5,365 Icelandic ancestry individuals	NA	14q23.3		rs9635249-A	0.1772	1E-13		0.184771	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
1086	chr14	65797783	65797784	rs9635249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q23.3	MIR4708	rs9635249-G	0.788423	3E-34		0.0339815	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr14	65799875	65799876	rs11158588	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSA	5,364 Icelandic ancestry individuals	NA	14q23.3		rs11158588-G	0.178	2E-14		0.187849	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
1087	chr14	65799875	65799876	rs11158588	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q23.3		rs11158588-G	0.213	6E-12				Affymetrix [10369434] (imputed)	N
1087	chr14	65799875	65799876	rs11158588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q23.3	MIR4708	rs11158588-A	0.786943	3E-25		0.028803168	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr14	65799875	65799876	rs11158588	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q23.3	MIR4708	rs11158588-A	0.7872	5E-12		0.03122528	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr14	65800320	65800321	rs899961	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q23.3	NR	rs899961-C	0.701	4E-291	(Alpha-(1,6)-fucosyltransferase, FUT8.8244.16.3)	0.85	[0.81-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
1087	chr14	65821993	65821994	rs7141874	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	14q23.3	Intergenic	rs7141874-A		4E-6		0.057	[0.033-0.082] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
1087	chr14	65822492	65822493	rs11621121	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs11621121-G	0.43	2E-23	(DG1)	0.26744887	[0.21-0.32] (zscore) increase	Illumina [NR]	N
1087	chr14	65822492	65822493	rs11621121	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs11621121-G	0.43	2E-16	(DG1, women)	0.28071183	[0.21-0.35] (zscore) increase	Illumina [NR]	N
1087	chr14	65828206	65828207	rs7157006	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7157006-T	0.6053	3E-16	(IgG2_G0n)	0.3121	[0.24-0.39] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65828524	65828525	rs11628611	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q23.3		rs11628611-T	0.47467	1E-9		0.1704	[0.12-0.23] unit increase	Illumina [17945888] (imputed)	N
1087	chr14	65833498	65833499	rs10149004	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	14q23.3	FUT8	rs10149004-C	0.13	9E-6		0.211	[0.12-0.31] unit decrease	Illumina [NR] (imputed)	N
1087	chr14	65840773	65840774	rs11621604	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11621604-G	0.593	9E-16	(IgG2_G0)	0.3085	[0.23-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65855761	65855762	rs11158591	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158591-T	0.5986	9E-7	(IgG1_G2(20)/IgG2_G2(20))	0.1839	[0.11-0.26] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	7E-15	(IgG2 FG0n total/G0n)	0.2952	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	5E-12	(IgG1_G2N/IgG1_G1N)	0.2572	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	4E-14	(IgG1_G1NS1/IgG1_G1N)	0.2833	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	3E-14	(IgG1 BG1S1/(BG1+BG1S1))	0.2837	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	3E-13	(IgG1_G1S1/IgG1_G1)	0.269	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	2E-14	(IgG2_G0F/IgG2_G0)	0.288	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	2E-13	(IgG1 G1S1/(G1+G1S1))	0.2704	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	2E-10	(IgG1 GS1/(G0+G+GS1))	0.237	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	1E-6	(IgG1 Fn)	0.1817	[0.11-0.26] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	1E-17	(IgG1_G2FS1/IgG1_G2S1)	0.3233	[0.25-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.531	1E-11	(IgG1 GS1/(G+GS1))	0.2543	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859967	65859968	rs11158592	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158592-T	0.5308	4E-15	(IgG1 BGS1/(BG0+BG+BGS1))	0.2968	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65859983	65859984	rs11158593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q23.3		rs11158593-A	0.47894	7E-13		0.1981	[0.14-0.25] unit increase	Illumina [17945511] (imputed)	N
1087	chr14	65859983	65859984	rs11158593	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158593-A	0.532	2E-6	(IgG1_G1Fn)	0.1729	[0.1-0.24] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65862986	65862987	rs4899178	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q23.3	FUT8	rs4899178-T	0.607	9E-22	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1087	chr14	65865254	65865255	rs6573611	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q23.3	NR	rs6573611-T	0.598	1E-21	(Advanced glycosylation end product-specific receptor, soluble, AGER.4125.52.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1087	chr14	65865624	65865625	rs7147624	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	14q23.3	FUT8	rs7147624-T	0.15	5E-6	(TNFA)			Illumina [588352]	N
1087	chr14	65871501	65871502	rs7150448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	14q23.3		rs7150448-T	NR	1E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1087	chr14	65878394	65878395	rs2411822	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2411822-G	0.4875	2E-13	(IgG2_G2/IgG2_G1)	0.2698	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65890602	65890603	rs7151561	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	14q23.3	FUT8	rs7151561-T	NR	3E-7		0.690253	[0.43-0.95] unit increase	NR [9955952] (imputed)	N
1087	chr14	65892441	65892442	rs144723379	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	14q23.3	FUT8	rs144723379-?	NR	5E-6				Illumina [NR] (imputed)	N
1087	chr14	65892441	65892442	rs144723379	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	14q23.3	FUT8	rs144723379-?	NR	1E-6		3.0	[1.84-4.90]	Illumina [NR] (imputed)	N
1087	chr14	65892694	65892695	rs144903947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q23.3	FUT8	rs144903947-C	0.21419	5E-12		0.018917698	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	9E-15	(IgG1_G1)	0.2918	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	9E-13	(IgG1_G0F/IgG1_G0)	0.2687	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	8E-16	(IgG1_G2F/IgG1_G2)	0.3013	[0.23-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	8E-12	(IgG1_G0Nn)	0.256	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	7E-12	(IgG1_G0N)	0.2566	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	6E-9	(IgG1 FG2n/G2n)	0.2175	[0.14-0.29] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	4E-14	(IgG1_G0FN/IgG1_G0N)	0.2867	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	4E-14	(IgG1 Fucosylation)	0.2849	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	4E-11	(IgG1_G1Nn)	0.2467	[0.17-0.32] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	3E-15	(IgG1 Fn total)	0.297	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	3E-13	(IgG1 FG0n total/G0n)	0.2747	[0.2-0.35] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	3E-12	(IgG1 Bn)	0.2619	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-17	(IgG1 FBn/Bn total)	0.322	[0.25-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-16	(IgG1 FG2n total/G2n)	0.3075	[0.23-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-15	(IgG1_G0n)	0.2993	[0.23-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-15	(IgG1_G0)	0.2989	[0.23-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-14	(IgG1_G1n)	0.2879	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-12	(IgG1 Bn/Fn total)	0.2653	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-11	(IgG1_G1N)	0.2521	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-11	(IgG1 Fn/Bn)	0.2506	[0.18-0.32] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	2E-10	(IgG1 BG0n/G0n)	0.2381	[0.16-0.31] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	1E-18	(IgG1_G1FN/IgG1_G1N)	0.3324	[0.26-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	1E-15	(IgG1 FG1n total/G1n)	0.3009	[0.23-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	1E-14	(IgG1_G1F/IgG1_G1)	0.2896	[0.22-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65895760	65895761	rs867972	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs867972-C	0.4875	1E-12	(IgG1 BG1n/G1n)	0.2657	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1087	chr14	65908469	65908474	rs556994851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q23.3	FUT8	rs556994851-C	0.650122	6E-10		0.014387495	[0.0098-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1087	chr14	65914866	65914867	rs10483776	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q23.3	FUT8	rs10483776-G	NR	3E-12		0.015969656	[0.011-0.02] unit decrease	Illumina [242289]	N
1087	chr14	65914866	65914867	rs10483776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	9E-10	(DG6)	0.2002157	[0.14-0.26] (zscore) decrease	Illumina [NR]	N
1087	chr14	65914866	65914867	rs10483776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	3E-11	(GP10, women)	0.28158513	[0.2-0.36] (zscore) decrease	Illumina [NR]	N
1087	chr14	65914866	65914867	rs10483776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	2E-8	(DG10)	0.18603349	[0.12-0.25] (zscore) decrease	Illumina [NR]	N
1087	chr14	65914866	65914867	rs10483776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	1E-8	(FUC-C)	0.18541694	[0.12-0.25] (zscore) decrease	Illumina [NR]	N
1087	chr14	65914866	65914867	rs10483776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	1E-14	(GP10)	0.25490817	[0.19-0.32] (zscore) decrease	Illumina [NR]	N
1087	chr14	65914866	65914867	rs10483776	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	14q23.3	FUT8	rs10483776-G	0.21	1E-8	(DG6)	0.22	[0.14-0.30] unit decrease	Illumina [~ 300000]	N
1088	chr14	65962283	65962284	rs138656381	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	14q23.3	NR	rs138656381-T	NR	2E-6	(GEE model)	0.93839	[0.55-1.33] unit decrease	NR [NR] (imputed)	N
1088	chr14	65972583	65972584	rs2898818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q23.3		rs2898818-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1088	chr14	65986175	65986176	rs186116546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q23.3	FUT8	rs186116546-T	1.0	3E-6	(AA)	0.559	unit increase	Illumina [NR] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	9E-15	(IgG1 Fn total)	0.2966	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	9E-13	(IgG1 FG0n total/G0n)	0.2733	[0.2-0.35] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	8E-9	(IgG1 GS1/(G0+G+GS1))	0.2146	[0.14-0.29] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	7E-17	(IgG1 FBn/Bn total)	0.3206	[0.25-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	7E-12	(IgG1 Bn)	0.2612	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	6E-16	(IgG1 FG2n total/G2n)	0.3071	[0.23-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	6E-15	(IgG1_G0)	0.2966	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	5E-15	(IgG1_G0n)	0.2974	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	4E-18	(IgG1_G1FN/IgG1_G1N)	0.3317	[0.26-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	4E-14	(IgG1_G1n)	0.2885	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	4E-12	(IgG1 Bn/Fn total)	0.2645	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	3E-15	(IgG1 FG1n total/G1n)	0.3009	[0.23-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	3E-14	(IgG1_G1F/IgG1_G1)	0.2898	[0.22-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	3E-11	(IgG1_G1N)	0.2524	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	3E-10	(IgG1 GS1/(G+GS1))	0.2368	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	2E-15	(IgG1_G2F/IgG1_G2)	0.301	[0.23-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	2E-14	(IgG1_G1)	0.292	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	2E-12	(IgG1_G0F/IgG1_G0)	0.2678	[0.19-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	2E-12	(IgG1 BG1n/G1n)	0.2657	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	1E-13	(IgG1_G0FN/IgG1_G0N)	0.2842	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66003465	66003466	rs7153297	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs7153297-A	0.4825	1E-13	(IgG1 Fucosylation)	0.2838	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	4E-12	(IgG1 BGS1/(BG0+BG+BGS1))	0.2577	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	4E-10	(IgG1 BG0n/G0n)	0.2349	[0.16-0.31] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	2E-12	(IgG1_G1NS1/IgG1_G1N)	0.2588	[0.19-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	2E-12	(IgG1 BG1S1/(BG1+BG1S1))	0.2593	[0.19-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	2E-11	(IgG1_G0Nn)	0.2516	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66010318	66010319	rs2149841	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs2149841-T	0.492	2E-11	(IgG1_G0N)	0.2516	[0.18-0.32] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66011183	66011184	rs7147636	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	14q23.3	FUT8	rs7147636-T	0.331	5E-37	(plasma glycan peak 20)	0.3933	[0.34-0.45] unit decrease	Illumina [8557543] (imputed)	N
1088	chr14	66014680	66014681	rs11621680	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11621680-G	0.5087	8E-14	(IgG1_G2FS1/IgG1_G2S1)	0.284	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66014680	66014681	rs11621680	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11621680-G	0.5087	6E-11	(IgG1_G1Nn)	0.2489	[0.17-0.32] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66014680	66014681	rs11621680	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11621680-G	0.5087	2E-9	(IgG1 FG2n/G2n)	0.2295	[0.16-0.3] unit increase	Affymetrix [up to 18185628] (imputed)	N
1088	chr14	66036794	66036795	rs1958560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGER	5,368 Icelandic ancestry individuals	NA	14q23.3		rs1958560-G	0.419	8E-21		0.180722	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1088	chr14	66036794	66036795	rs1958560	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	14q23.3	FUT8	rs1958560-A	0.59	4E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1088	chr14	66049928	66049929	rs182491339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q23.3	FUT8	rs182491339-G	1.0	2E-6	(AA)	0.581	unit increase	Illumina [NR] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.5061	9E-11	(IgG1 G1S1/(G1+G1S1))	0.2384	[0.17-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.5061	7E-14	(IgG2_G0F/IgG2_G0)	0.2834	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.5061	3E-11	(IgG1_G2	0.252	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.5061	2E-14	(IgG2_G0)	0.2911	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.5061	1E-10	(IgG1_G1S1/IgG1_G1)	0.236	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.506	2E-14	(IgG2 FG0n total/G0n)	0.2914	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66071732	66071733	rs11158602	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11158602-G	0.506	1E-14	(IgG2_G0n)	0.294	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66074634	66074635	rs4902407	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs4902407-G	0.5018	5E-9	(IgG1_G2N/IgG1_G1N)	0.2193	[0.15-0.29] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66074634	66074635	rs4902407	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs4902407-G	0.5018	4E-13	(IgG2_G2/IgG2_G1)	0.2713	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66075003	66075004	rs10145146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q23.3	NR	rs10145146-T	0.71182	3E-14				Affymetrix, Illumina [24558453] (imputed)	N
1089	chr14	66075003	66075004	rs10145146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q23.3	NR	rs10145146-T	0.67981	2E-17		0.016908	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1089	chr14	66110796	66110797	rs11158607	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	14q23.3	NR	rs11158607-T	0.34	7E-10		0.0118	[0.008-0.0156] unit increase	NR [NR]	N
1089	chr14	66117440	66117441	rs200603803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q23.3	FUT8	rs200603803-C	0.159408	5E-12		0.020925218	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr14	66121467	66121468	rs12435908	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke	2,567 European ancestry cases, 17,163 European ancestry controls, 381 African American ancestry cases, 352 African American ancestry controls, 678 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	1,003 European ancestry cases, 7,745 European ancestry controls	14q23.3	FUT8	rs12435908-A	0.93	7E-6	(EA)	1.29	[1.15-1.44]	Illumina [up to 13439215] (imputed)	N
1089	chr14	66137036	66137037	rs183228067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q23.3	FUT8	rs183228067-C	0.00183800000000001	3E-9		0.217765	[0.16-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr14	66137036	66137037	rs183228067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q23.3	FUT8	rs183228067-C	0.00183699999999998	5E-11		0.21184291	[0.15-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	8E-17	(IgG1 FBn/Bn total)	0.3145	[0.24-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	6E-16	(IgG1 FG2n total/G2n)	0.3019	[0.23-0.38] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	5E-14	(IgG1_G1n)	0.2824	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	4E-18	(IgG1_G1FN/IgG1_G1N)	0.3258	[0.25-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	4E-15	(IgG1 FG1n total/G1n)	0.2948	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	4E-14	(IgG1_G1F/IgG1_G1)	0.2837	[0.21-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	3E-14	(IgG1_G1)	0.2853	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	2E-15	(IgG1_G2F/IgG1_G2)	0.2956	[0.22-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	2E-13	(IgG1_G2FS1/IgG1_G2S1)	0.2724	[0.2-0.35] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	2E-12	(IgG1_G0F/IgG1_G0)	0.2634	[0.19-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	1E-14	(IgG1 Fn total)	0.2908	[0.22-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	1E-12	(IgG1_G1NS1/IgG1_G1N)	0.2591	[0.19-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66161798	66161799	rs12894902	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs12894902-T	0.4923	1E-12	(IgG1 BG1S1/(BG1+BG1S1))	0.2597	[0.19-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66180087	66180088	rs8018278	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018278-G	0.5025	3E-13	(IgG2 FG0n total/G0n)	0.2708	[0.2-0.34] unit increase	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66180087	66180088	rs8018278	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018278-G	0.5025	2E-13	(IgG2_G0)	0.2747	[0.2-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1089	chr14	66180087	66180088	rs8018278	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018278-G	0.5025	1E-12	(IgG2_G0F/IgG2_G0)	0.2621	[0.19-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66191781	66191782	rs11622829	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs11622829-A	0.5031	3E-12	(IgG2_G2/IgG2_G1)	0.2561	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66200176	66200177	rs3742597	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs3742597-G	0.28	1E-14	(A2, women)	0.29892227	[0.22-0.37] (zscore) increase	Illumina [NR]	N
1090	chr14	66219516	66219517	rs10483785	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs10483785-A	0.5094	1E-8	(IgG1 GS1/(G0+G+GS1))	0.2093	[0.14-0.28] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66222010	66222011	rs79666627	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	14q23.3	NR	rs79666627-C	NR	8E-6	(GEE model)	0.89637	[0.5-1.29] unit decrease	NR [NR] (imputed)	N
1090	chr14	66240694	66240695	rs6573626	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs6573626-C	0.5422	1E-13	(IgG2_G0n)	0.287	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66240694	66240695	rs6573626	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs6573626-C	0.542	5E-15	(IgG1_G0)	0.3026	[0.23-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66240694	66240695	rs6573626	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs6573626-C	0.542	5E-10	(IgG1_G1S1/IgG1_G1)	0.2324	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66240694	66240695	rs6573626	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs6573626-C	0.542	4E-15	(IgG1_G0n)	0.3042	[0.23-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66240694	66240695	rs6573626	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs6573626-C	0.542	3E-10	(IgG1 G1S1/(G1+G1S1))	0.2343	[0.16-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66244654	66244655	rs8022764	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8022764-G	0.5214	2E-10	(IgG1_G2N/IgG1_G1N)	0.244	[0.17-0.32] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250955	66250956	rs7143026	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	14q23.3	FUT8, FUT8-AS1	rs7143026-?	NR	3E-8				Affymetrix [up to 7325140] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	8E-12	(IgG1 Fn/Bn)	0.3079	[0.22-0.4] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	6E-14	(IgG1 Fucosylation)	0.3405	[0.25-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	5E-13	(IgG1 FG0n total/G0n)	0.3282	[0.24-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	4E-12	(IgG1_G1N)	0.3118	[0.22-0.4] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	3E-11	(IgG1 BG0n/G0n)	0.3001	[0.21-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	2E-12	(IgG1 Bn)	0.3166	[0.23-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	2E-12	(IgG1 BG1n/G1n)	0.3184	[0.23-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	1E-9	(IgG1 FG2n/G2n)	0.2734	[0.19-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	1E-14	(IgG1_G0FN/IgG1_G0N)	0.3521	[0.26-0.44] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	1E-12	(IgG1 Bn/Fn total)	0.3204	[0.23-0.41] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66250998	66250999	rs67662065	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs67662065-T	0.2339	1E-11	(IgG1_G1Nn)	0.3049	[0.22-0.39] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66251049	66251050	rs28470717	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs28470717-C	0.3984	9E-13	(IgG1_G0N)	0.2918	[0.21-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66251049	66251050	rs28470717	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs28470717-C	0.3984	8E-13	(IgG1_G0Nn)	0.2929	[0.21-0.37] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66259393	66259394	rs4073416	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	14q23.3	FUT8	rs4073416-G	0.43	7E-15	(GP1, women)	0.26750377	[0.2-0.33] (zscore) increase	Illumina [NR]	N
1090	chr14	66261936	66261937	rs8018379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.3		rs8018379-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	8E-14	(IgG1 FG2n total/G2n)	0.2859	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	5E-16	(IgG1_G1FN/IgG1_G1N)	0.3131	[0.24-0.39] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	3E-12	(IgG1 Fn total)	0.2681	[0.19-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	2E-14	(IgG1 FBn/Bn total)	0.297	[0.22-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	2E-13	(IgG1_G2F/IgG1_G2)	0.2808	[0.21-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	2E-11	(IgG1_G1n)	0.2574	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	2E-11	(IgG1_G1)	0.2591	[0.18-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	1E-9	(IgG1_G0F/IgG1_G0)	0.2334	[0.16-0.31] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	1E-12	(IgG1 FG1n total/G1n)	0.2727	[0.2-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66261936	66261937	rs8018379	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	14q23.3	NR	rs8018379-G	0.4055	1E-11	(IgG1_G1F/IgG1_G1)	0.2597	[0.18-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
1090	chr14	66262962	66262963	rs8007846	20802204	Baranzini SE	2010-09-01	Brain	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	14q23.3	FUT8	rs8007846-?	NR	9E-6				Illumina [~ 500000]	N
1090	chr14	66278991	66278992	rs9323466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q23.3		rs9323466-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1090	chr14	66287909	66287910	rs7494064	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q23.3	FUT8	rs7494064-G	0.048	8E-6	(Head circumference )	0.04	[NR] cm increase	Illumina [899892]	N
1090	chr14	66289349	66289350	rs12882879	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	14q23.3	NR	rs12882879-?	NR	2E-6		0.8099	[0.72-0.9]	Illumina [NR] (imputed)	N
1090	chr14	66315882	66315883	rs11625793	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q23.3	NCOA4P1	rs11625793-G	NR	2E-6		1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
1090	chr14	66315882	66315883	rs11625793	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q23.3	NCOA4P1	rs11625793-G	NR	1E-6	(EA)	1.0557432	[1.03-1.08]	Illumina [6627481] (imputed)	N
1090	chr14	66315882	66315883	rs11625793	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q23.3	intergenic	rs11625793-G	NR	2E-7		1.0526316	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1090	chr14	66315882	66315883	rs11625793	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q23.3	NR	rs11625793-G	NR	5E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1091	chr14	66402259	66402260	rs4902438	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	14q23.3	LOC729850	rs4902438-?	NR	4E-6				Illumina [1940243] (imputed)	N
1092	chr14	66468995	66468996	rs1815532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q23.3	Intergenic	rs1815532-C	0.6595	8E-9	(MTAG)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1092	chr14	66526304	66526305	rs148470522	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q23.3	NR	rs148470522-G	0.01045	4E-10	(DCN)	0.06867	NR unit increase	Illumina [1671387] (imputed)	N
1093	chr14	66591629	66591630	rs115335372	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	14q23.3	FUT8, CCDC196	rs115335372-T	NR	3E-6		0.8334	[0.49-1.18] unit decrease	Illumina [9377111] (imputed)	N
1094	chr14	66769408	66769409	rs6573662	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	14q23.3	NR	rs6573662-?	NR	3E-20	(conditional)	0.188	[0.15-0.23] unit increase (conditional)	Illumina [1770809] (imputed)	N
1094	chr14	66844742	66844743	rs1457436	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	14q23.3	NR	rs1457436-?	NR	2E-67	(conditional)	0.506	[0.45-0.56] unit decrease (conditional)	Illumina [1770809] (imputed)	N
1096	chr14	66985971	66985972	rs17103572	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q23.3	NR	rs17103572-?	NR	2E-8				Affymetrix [NR]	N
1097	chr14	67112420	67112421	rs190850598	33485957	Patrick MT	2021-01-21	J Allergy Clin Immunol	Associations between COVID-19 and skin conditions identified through epidemiology and genomic studies.	COVID-19 or atopic dermatitis (trans-disease meta-analysis)	30,937 COVID-19 cases, 21,000 atopic dermatitis cases, 1,566,815 controls	NA	14q23.3	NR	rs190850598-?	NR	2E-7				NR [NR]	N
1097	chr14	67228855	67228855	rs35926471	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q23.3	GPHN	rs35926471-T	0.9193	2E-12		0.0249	[0.018-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1097	chr14	67235721	67235722	rs6573723	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	14q23.3	NR	rs6573723-?	NR	2E-34	(conditional)	0.303	[0.25-0.35] unit increase (conditional)	Illumina [1770809] (imputed)	N
1098	chr14	67249420	67249421	rs113330417	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	14q23.3	NR	rs113330417-G	0.020000000000000018	2E-7		1.754386	[1.41-2.17]	NR [8482392] (imputed)	N
1098	chr14	67324459	67324460	rs6573725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q23.3		rs6573725-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1098	chr14	67353107	67353108	rs72728697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	14q23.3	GPHN	rs72728697-A	0.9128	6E-6		0.0568	[0.032-0.081] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr14	67453857	67453858	rs8020095	23290196	Hek K	2013-01-02	Biol Psychiatry	A genome-wide association study of depressive symptoms.	Depression (quantitative trait)	up to 34,549 European ancestry individuals	up to 16,709 European ancestry individuals	14q23.3	GPHN	rs8020095-A	0.17	3E-6				Affymetrix, Illumina [2391896] (imputed)	N
1100	chr14	67529619	67529620	rs146647518	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Tandem gait	2,946 individuals	NA	14q23.3	GPHN	rs146647518-A	0.06	2E-7	(Sum sidestep distance)	8.183	[5.12-11.24] unit increase	Illumina [6200000] (imputed)	N
1101	chr14	67654553	67654554	rs555218597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q23.3	FAM71D	rs555218597-C	0.00135799999999997	1E-10		0.22463128	[0.16-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1101	chr14	67670094	67670095	rs192465115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	14q23.3		rs192465115-G	NR	4E-8		1.1792	[0.76-1.6] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
1101	chr14	67670094	67670095	rs192465115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	14q23.3		rs192465115-G	0.003628107	4E-8		1.1792427	[0.76-1.6] unit increase	Illumina [13426486] (imputed)	N
1102	chr14	67873127	67873128	rs9323497	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or major depressive disorder (recurrent)	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 5,303 Chinese ancestry recurrent major depressive disorder cases, 5,337 Chinese ancestry recurrent major depressive disorder controls	322,580 individuals	14q24.1	PLEK2	rs9323497-T	0.05	4E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
1102	chr14	67873127	67873128	rs9323497	28049566	Direk N	2016-12-08	Biol Psychiatry	An Analysis of Two Genome-wide Association Meta-analyses Identifies a New Locus for Broad Depression Phenotype.	Depressive symptom measurement or major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls, 51,150 European ancestry individuals with depressive symptom measurement	6,879 European ancestry cases, 13,453 European ancestry controls, 5,303 Chinese ancestry cases, 5,337 Chinese ancestry controls, 8,157 European American individuals with depressive symptom measurement	14q24.1	PLEK2	rs9323497-?	NR	4E-6	(European)	4.61	Z score increase	Affymetrix, Illumina, Perlegen [918921] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q24.1	PLEK2	rs17248895-C	0.10302	9E-45		0.051994	[0.045-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q24.1	PLEK2	rs17248895-C	0.103028	1E-21		0.035057474	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q24.1	PLEK2	rs17248895-C	0.103027	2E-21		0.034832027	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	14q24.1	PLEK2	rs17248895-C	0.1031	7E-20		0.05328269	[0.042-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	14q24.1	PLEK2	rs17248895-C	0.1031	5E-12		0.04076049	[0.029-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1102	chr14	67883623	67883624	rs17248895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	14q24.1	PLEK2	rs17248895-C	0.1031	4E-12		0.040864	[0.029-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1103	chr14	67921638	67921639	rs8019177	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q24.1	NR	rs8019177-?	NR	3E-6		0.110826	[0.064-0.158] unit increase	NR [13958389] (imputed)	N
1103	chr14	67939482	67939483	rs17104363	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.1	TMEM229B	rs17104363-G	0.05	5E-8	(Dinner intake, adj EER )	0.04	[NR] kcal increase	Illumina [899892]	N
1103	chr14	67959099	67959100	rs10129316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10129316-A	NR	1E-40		0.0933	[0.08-0.107] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67959099	67959100	rs10129316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10129316-A	NR	1E-40		0.0949	[0.081-0.109] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67963699	67963700	rs10148645	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10148645-C	NR	5E-40		0.0929	[0.079-0.107] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67963699	67963700	rs10148645	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10148645-A	NR	4E-40		0.0819	[0.07-0.094] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67964170	67964171	rs12898179	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12898179-G	NR	7E-26		0.0819	[0.067-0.097] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964170	67964171	rs12898179	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12898179-A	NR	7E-26		0.0654	[0.053-0.078] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964170	67964171	rs12898179	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	14q24.1	TMEM229B	rs12898179-C	0.79	9E-6		0.08	[0.041-0.119] unit decrease	Illumina [~ 8300000] (imputed)	N
1103	chr14	67964354	67964355	rs12897380	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12897380-G	NR	6E-26		0.0587	[0.048-0.07] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964354	67964355	rs12897380	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12897380-G	NR	6E-26		0.0646	[0.053-0.077] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964687	67964688	rs12878807	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878807-T	NR	5E-26		0.0722	[0.059-0.086] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964687	67964688	rs12878807	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878807-T	NR	5E-26		0.1322	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964687	67964688	rs12878807	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878807-G	NR	5E-26		0.064	[0.052-0.076] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67964687	67964688	rs12878807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q24.1	TMEM229B	rs12878807-A	0.477954	1E-9		0.013451946	[0.0091-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1103	chr14	67965451	67965452	rs11158671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158671-A	NR	4E-31		0.1016	[0.084-0.119] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67965451	67965452	rs11158671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158671-G	NR	4E-31		0.0752	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67965451	67965452	rs11158671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158671-A	NR	4E-31		0.1376	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67965451	67965452	rs11158671	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	14q24.1	PLEKHH1	rs11158671-A	0.4473	9E-7	(PCO(16:1;0-16:0;0))	0.1649	[0.099-0.231] unit decrease	Illumina [~ 9300000] (imputed)	N
1103	chr14	67965850	67965851	rs11158672	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158672-C	NR	4E-31		0.0752	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67965850	67965851	rs11158672	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158672-T	NR	4E-31		0.0752	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67966598	67966599	rs10873201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873201-T	NR	2E-32		0.1722	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67966598	67966599	rs10873201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873201-C	NR	2E-32		0.0977	[0.082-0.114] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67966598	67966599	rs10873201	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873201-T	NR	2E-32		0.1739	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67966621	67966622	rs10873202	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873202-T	NR	2E-32		0.171	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67966621	67966622	rs10873202	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873202-G	NR	2E-32		0.1739	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67968839	67968840	rs61988187	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988187-T	NR	9E-11		0.1613	[0.11-0.21] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67968839	67968840	rs61988187	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988187-G	NR	9E-11		0.1647	[0.11-0.21] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67968937	67968938	rs11158674	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	14q24.1		rs11158674-?	NR	7E-7		0.25	[0.15-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs72719193-T	NR	3E-10		0.0355	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs72719193-C	NR	3E-10		0.0715	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:1_[M-H]1-/Phosphatidylethanolamine-P_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q24.1		rs72719193-A	NR	7E-25		0.0843008	[0.068-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs72719193-A	NR	4E-68		0.206017	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs72719193-G	NR	3E-10		0.0355	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs72719193-A	NR	1E-10		0.0548802	[0.038-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs72719193-A	NR	4E-21	(Phosphatidylcholine with acyl-alkyl residue sum C36:5/Phosphatidylcholine with acyl-alkyl residue sum C38:5)	0.376328	[0.3-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67969107	67969108	rs72719193	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs72719193-A	NR	3E-16	(Phosphatidylcholine with acyl-alkyl residue sum C32:2/Phosphatidylcholine with acyl-alkyl residue sum C34:1)	0.330504	[0.25-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67969293	67969294	rs11622515	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11622515-A	NR	7E-29		0.1219	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67969549	67969550	rs11622608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11622608-A	NR	8E-29		0.1025	[0.084-0.121] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67969549	67969550	rs11622608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11622608-T	NR	8E-29		0.1248	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67969760	67969761	rs11626910	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11626910-A	NR	8E-29		0.0888	[0.073-0.104] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67969760	67969761	rs11626910	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11626910-T	NR	8E-29		0.1242	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67970187	67970188	rs3818242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs3818242-G	NR	5E-12		0.0955	[0.068-0.123] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67970187	67970188	rs3818242	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs3818242-T	NR	5E-12		0.1076	[0.077-0.138] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67970973	67970974	rs61988189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988189-T	NR	9E-11		0.0427	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67970973	67970974	rs61988189	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988189-A	NR	9E-11		0.098	[0.068-0.128] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67971135	67971136	rs61988190	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988190-G	NR	9E-11		0.0713	[0.05-0.093] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67971135	67971136	rs61988190	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs61988190-G	NR	9E-11		0.0493	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67972762	67972763	rs28373080	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs28373080-C	NR	1E-12		0.0422	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67972762	67972763	rs28373080	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs28373080-T	NR	1E-12		0.0555	[0.04-0.071] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67972921	67972922	rs17093620	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs17093620-G	NR	4E-22		0.0581	[0.046-0.07] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67972921	67972922	rs17093620	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs17093620-C	NR	4E-22		0.0937	[0.075-0.113] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67973631	67973632	rs10140925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10140925-C	NR	2E-40		0.0932	[0.079-0.107] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67973631	67973632	rs10140925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10140925-C	NR	2E-40		0.1019	[0.087-0.117] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974504	67974505	rs10873203	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873203-C	NR	2E-32		0.1244	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974504	67974505	rs10873203	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873203-G	NR	2E-32		0.0974	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974504	67974505	rs10873203	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	14q24.1	TMEM229B	rs10873203-G	NR	1E-5			[NR]	NR [NR] (imputed)	N
1103	chr14	67974811	67974812	rs10144299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10144299-G	NR	4E-40		0.1405	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974811	67974812	rs10144299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10144299-T	NR	3E-40		0.1868	[0.16-0.21] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974927	67974928	rs10133655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10133655-A	NR	2E-40		0.0942	[0.08-0.108] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67974927	67974928	rs10133655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10133655-C	NR	2E-40		0.1397	[0.12-0.16] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67975035	67975036	rs34393725	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs34393725-G	NR	2E-13		0.145021	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67975327	67975328	rs11850406	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11850406-T	NR	1E-27		0.1219	[0.1-0.144] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67975327	67975328	rs11850406	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11850406-G	NR	1E-27		0.0816	[0.067-0.096] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67975327	67975328	rs11850406	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	14q24.1	NR	rs11850406-A	NR	9E-6				NR [NR] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1077989-G	NR	3E-34		0.0825	[0.069-0.096] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1077989-C	NR	3E-34		0.1385	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1077989-C	NR	2E-34		0.1245	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q24.1	TMEM229B	rs1077989-A	0.504203	6E-66	(1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1)*)	0.397	[0.35-0.44] unit increase	Illumina [13039987] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q24.1	TMEM229B	rs1077989-A	0.504203	4E-85	(1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)*)	0.443	[0.4-0.49] unit increase	Illumina [13039987] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q24.1	TMEM229B	rs1077989-A	0.504203	3E-30	(1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4)*)	0.258	[0.21-0.3] unit increase	Illumina [13039987] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q24.1	TMEM229B	rs1077989-A	0.504203	2E-14	(1-(1-enyl-palmitoyl)-2-oleoyl-GPC (P-16:0/18:1)*)	0.178	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1077989-C	NR	6E-16	(Phosphatidylcholine with acyl-alkyl residue sum C32:2/Sphingomyelin with acyl residue sum C16:1)	0.328811	[0.25-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1077989-C	NR	3E-14	(Phosphatidylcholine with acyl-alkyl residue sum C32:2/Hydroxysphingomyelin with acyl residue sum C22:2)	0.308987	[0.23-0.39] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1077989-C	NR	2E-20	(Phosphatidylcholine with acyl-alkyl residue sum C36:4/Phosphatidylcholine with acyl-alkyl residue sum C36:5)	0.368982	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1077989-C	NR	2E-8	(Phosphatidylcholine with acyl-alkyl residue sum C32:2)	0.212349	[0.14-0.29] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1077989-C	NR	2E-12	(Phosphatidylcholine with acyl-alkyl residue sum C32:1)	0.278589	[0.2-0.36] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	14q24.1	TMEM229B	rs1077989-A	0.5294	9E-57	(Phosphatidylcholine acyl-alkyl C32:1)	0.0653	[0.057-0.073] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	14q24.1	TMEM229B	rs1077989-A	0.5293	6E-40	(Phosphatidylcholine acyl-alkyl C36:5)	0.0636	[0.054-0.073] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	14q24.1	TMEM229B	rs1077989-A	0.5292	1E-45	(Phosphatidylcholine acyl-alkyl C32:2)	0.0603	[0.052-0.069] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
1103	chr14	67975821	67975822	rs1077989	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	14q24.1	PLEKHH1	rs1077989-?	NR	9E-18	(levels)	0.0	[0.80-1.80] % increase	Illumina [NR] (imputed)	N
1103	chr14	67976056	67976057	rs2004555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs2004555-A	NR	1E-13		0.0409	[0.03-0.052] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67976056	67976057	rs2004555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs2004555-C	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67976324	67976325	rs1885041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1885041-C	NR	1E-13		0.0813	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67976324	67976325	rs1885041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol-O(36:0)_[M-H]1-/Phosphatidylglycerol(37:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1885041-G	NR	1E-13		0.0417	[0.031-0.053] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67976324	67976325	rs1885041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1885041-G	NR	1E-13		0.1074	[0.079-0.136] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67976324	67976325	rs1885041	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1885041-T	NR	5E-30	(Phosphatidylcholine with acyl-alkyl residue sum C32:1/Phosphatidylcholine with acyl-alkyl residue sum C34:1)	0.452313	[0.38-0.53] unit decrease	Illumina [up to 9281895] (imputed)	N
1103	chr14	67976324	67976325	rs1885041	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	14q24.1	TMEM229B	rs1885041-T	NR	5E-22	(Phosphatidylcholine with diacyl residue sum C32:0/Phosphatidylcholine with acyl-alkyl residue sum C32:1)	0.384229	[0.31-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
1103	chr14	67976326	67976327	rs1885040	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1885040-G	NR	1E-13		0.0825	[0.061-0.104] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67976326	67976327	rs1885040	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1885040-C	NR	1E-13		0.0816	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67978641	67978642	rs2874093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs2874093-T	NR	1E-10		0.0909384	[0.063-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1103	chr14	67979556	67979557	rs7155830	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7155830-A	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979556	67979557	rs7155830	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7155830-A	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979712	67979713	rs7156144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7156144-T	NR	2E-10		0.0789	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979712	67979713	rs7156144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7156144-C	NR	2E-10		0.0219	[0.015-0.029] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979844	67979845	rs7155911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7155911-C	NR	2E-10		0.0566	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67979844	67979845	rs7155911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:1_[M-H]1-/Phosphatidylethanolamine-P_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q24.1		rs7155911-G	NR	1E-17		0.0707108	[0.054-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67979844	67979845	rs7155911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs7155911-G	NR	1E-54		0.18592	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67979844	67979845	rs7155911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7155911-T	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979844	67979845	rs7155911	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine-O_16:1_[M+H]1+/Lysophosphatidylcholine-P_16:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs7155911-G	NR	1E-10		0.0555513	[0.039-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67979976	67979977	rs12878949	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878949-G	NR	5E-26		0.1124	[0.091-0.133] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67979976	67979977	rs12878949	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878949-A	NR	5E-26		0.0786	[0.064-0.093] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67980030	67980031	rs12878981	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878981-T	NR	5E-26		0.0791	[0.064-0.094] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67980030	67980031	rs12878981	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12878981-G	NR	5E-26		0.0614	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67980073	67980074	rs12879556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12879556-G	NR	6E-26		0.1469	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67980073	67980074	rs12879556	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs12879556-C	NR	5E-26		0.0935	[0.076-0.111] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67981402	67981403	rs10133618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10133618-C	NR	2E-40		0.1063	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67981402	67981403	rs10133618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10133618-A	NR	2E-40		0.1053	[0.09-0.121] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67981869	67981870	rs2273596	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs2273596-G	NR	4E-13		0.0612	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67981869	67981870	rs2273596	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs2273596-A	NR	4E-13		0.0786	[0.057-0.1] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67983484	67983485	rs7160944	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7160944-T	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983484	67983485	rs7160944	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7160944-A	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983490	67983491	rs7160654	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7160654-G	NR	2E-10		0.1049	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983490	67983491	rs7160654	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7160654-G	NR	2E-10		0.101	[0.07-0.132] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983539	67983540	rs7140327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7140327-G	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983539	67983540	rs7140327	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7140327-T	NR	2E-10		0.0218	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983558	67983559	rs7140470	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7140470-C	NR	2E-10		0.0591	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67983558	67983559	rs7140470	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7140470-G	NR	2E-10		0.1415	[0.098-0.185] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67983867	67983868	rs7161368	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7161368-G	NR	2E-10		0.0575	[0.04-0.075] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67983867	67983868	rs7161368	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7161368-T	NR	2E-10		0.1096	[0.076-0.144] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984104	67984105	rs7144333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7144333-C	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984104	67984105	rs7144333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7144333-C	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984108	67984109	rs7144624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7144624-T	NR	2E-10		0.0542	[0.037-0.071] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984108	67984109	rs7144624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs7144624-G	NR	2E-10		0.0515	[0.036-0.067] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67984369	67984370	rs1555399	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555399-C	NR	2E-23		0.0777	[0.062-0.093] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984369	67984370	rs1555399	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555399-G	NR	2E-23		0.088	[0.071-0.105] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984369	67984370	rs1555399	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	14q24.1	TMEM229B	rs1555399-T	0.514	1E-10		1.09	[1.06-1.11]	Illumina [11933700] (imputed)	N
1103	chr14	67984369	67984370	rs1555399	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	14q24.1	TMEM229B	rs1555399-T	0.532	7E-14		1.1148	[1.09-1.14]	Illumina [7893274] (imputed)	N
1103	chr14	67984372	67984373	rs1555398	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555398-G	NR	2E-23		0.099	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984372	67984373	rs1555398	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555398-T	NR	2E-23		0.0781	[0.063-0.093] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67984539	67984540	rs1555397	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555397-T	NR	2E-23		0.1872	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984539	67984540	rs1555397	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1555397-G	NR	2E-23		0.1333	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984661	67984662	rs10143518	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10143518-G	NR	2E-40		0.0929	[0.079-0.107] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984661	67984662	rs10143518	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10143518-A	NR	2E-40		0.091	[0.078-0.104] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984736	67984737	rs11621977	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11621977-G	NR	7E-29		0.0884	[0.073-0.104] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984736	67984737	rs11621977	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11621977-G	NR	7E-29		0.0902	[0.074-0.106] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984999	67985000	rs11627207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11627207-G	NR	8E-29		0.103	[0.085-0.121] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67984999	67985000	rs11627207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:1_[M-H]1-/Phosphatidylethanolamine-P_34:0_[M-H]1- levels	13,814 British ancestry individuals	NA	14q24.1		rs11627207-T	NR	2E-13		0.0605378	[0.044-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67984999	67985000	rs11627207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs11627207-T	NR	2E-34		0.145253	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1103	chr14	67984999	67985000	rs11627207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11627207-A	NR	8E-29		0.0677	[0.056-0.08] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67985331	67985332	rs1980614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1980614-A	NR	1E-13		0.0812	[0.06-0.103] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985331	67985332	rs1980614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs1980614-C	NR	1E-13		0.1059	[0.078-0.134] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67985356	67985357	rs11158675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158675-T	NR	5E-31		0.1389	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985356	67985357	rs11158675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158675-C	NR	4E-31		0.0752	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67985532	67985533	rs11158676	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158676-G	NR	5E-31		0.0752	[0.062-0.088] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67985532	67985533	rs11158676	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158676-G	NR	5E-31		0.1389	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985702	67985703	rs11158677	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158677-G	NR	5E-31		0.0924	[0.077-0.108] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985702	67985703	rs11158677	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158677-G	NR	5E-31		0.1266	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985991	67985992	rs10873204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873204-G	NR	2E-32		0.0976	[0.082-0.114] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67985991	67985992	rs10873204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10873204-G	NR	2E-32		0.0973	[0.081-0.113] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67986274	67986275	rs8019974	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs8019974-G	NR	5E-10		0.0552	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67986274	67986275	rs8019974	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs8019974-C	NR	5E-10		0.047	[0.032-0.062] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67986548	67986549	rs8019176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs8019176-C	NR	5E-10		0.0712	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67986548	67986549	rs8019176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs8019176-C	NR	5E-10		0.0767	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67987542	67987543	rs11158678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158678-G	NR	5E-31		0.0864	[0.072-0.101] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67987542	67987543	rs11158678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs11158678-C	NR	5E-31		0.0899	[0.075-0.105] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67987652	67987653	rs10130096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10130096-C	NR	2E-40		0.1063	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67987652	67987653	rs10130096	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs10130096-T	NR	1E-40		0.1349	[0.12-0.15] unit decrease	Illumina [6720657] (imputed)	N
1103	chr14	67988611	67988612	rs4899206	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs4899206-A	NR	2E-11		0.0876	[0.062-0.113] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67988611	67988612	rs4899206	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs4899206-A	NR	2E-11		0.0477	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67989096	67989097	rs4902477	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(44:9)_[M+H]1- levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs4902477-T	NR	2E-11		0.0457	[0.032-0.059] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67989096	67989097	rs4902477	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:5)_[M+H]1+/Phosphatidylcholine-P(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	14q24.1		rs4902477-A	NR	2E-11		0.0522	[0.037-0.067] unit increase	Illumina [6720657] (imputed)	N
1103	chr14	67994382	67994383	rs17104402	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	14q24.1		rs17104402-A	NR	2E-17		0.107158	[0.082-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1103	chr14	67998434	67998435	rs140168167	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	14q24.1	TMEM229B	rs140168167-T	0.97	6E-6		1.7303	[0.98-2.48] unit decrease	Illumina [9520174] (imputed)	N
1103	chr14	68010223	68010224	rs731681	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	14q24.1	PLEKHH1	rs731681-G	0.4416	8E-10		0.1071	[0.073-0.141] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1103	chr14	68021116	68021117	rs12891886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q24.1		rs12891886-C	NR	3E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1104	chr14	68039026	68039027	rs2236231	29317604	Liu D	2018-01-10	Transl Psychiatry	Beta-defensin 1, aryl hydrocarbon receptor and plasma kynurenine in major depressive disorder: metabolomics-informed genomics.	Plasma kynurenine levels in major depressive disorder	290 European ancestry individuals	NA	14q24.1	PLEKHH1	rs2236231-A	0.32	5E-6		0.4	[NR] unit decrease	Illumina [~ 7500000] (imputed)	N
1104	chr14	68045007	68045008	rs8012679	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.1	NR	rs8012679-A	0.0331	2E-8	(SERPINA3)	0.1281	NR unit increase	Illumina [1671387] (imputed)	N
1104	chr14	68064655	68064656	rs10151023	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.1	NR	rs10151023-?	NR	4E-6				Affymetrix [NR]	N
1104	chr14	68065033	68065034	rs2319844	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.1	NR	rs2319844-?	NR	2E-6				Affymetrix [NR]	N
1104	chr14	68066488	68066489	rs7149859	25890600	Guo Q	2015-04-18	J Natl Cancer Inst	Identification of novel genetic markers of breast cancer survival.	Breast cancer (survival)	23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases		14q24.1	NR	rs7149859-?		7E-7	(ER +ve)	1.22	[1.13-1.33]	Affymetrix, Illumina [9000000] (imputed)	N
1104	chr14	68117005	68117006	rs10483801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q24.1		rs10483801-A	NR	2E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1104	chr14	68118420	68118421	rs3215578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q24.1	NR	rs3215578-T	NR	1E-9		0.0186	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1104	chr14	68118420	68118421	rs3215578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q24.1	NR	rs3215578-T	NR	1E-9		0.0186	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1105	chr14	68189735	68189736	rs7149221	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.1	VTI1B	rs7149221-G	0.82984375	9E-6	(VTI1B, 8963_8_3)	0.14816596	[0.083-0.213] unit decrease	Illumina [> 1000000] (imputed)	N
1105	chr14	68243074	68243075	rs12891047	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	14q24.1	ZFYVE26	rs12891047-?		6E-7				Illumina [859311]	N
1106	chr14	68329019	68329020	rs72725119	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q24.1	RAD51B	rs72725119-A	0.1699	4E-12		0.03258156	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1106	chr14	68343733	68343734	rs75861629	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	14q24.1	NR	rs75861629-?	NR	4E-6		0.0704	[0.04-0.1] unit decrease	Illumina [~ 7800000] (imputed)	N
1106	chr14	68362509	68362510	rs1033686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.1	RAD51B	rs1033686-A	0.1527	4E-35		0.038810365	[0.033-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1106	chr14	68401944	68401945	rs10136790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q24.1		rs10136790-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1106	chr14	68405243	68405244	rs72725141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	14q24.1		rs72725141-A	0.826	1E-24				Affymetrix [10369434] (imputed)	N
1106	chr14	68407499	68407499	rs551672892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q24.1	RAD51B	rs551672892-GA	0.213555	4E-18		0.024005873	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1106	chr14	68413768	68413769	rs7151917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q24.1		rs7151917-T	NR	1E-42		0.0404	[0.035-0.046] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1107	chr14	68423214	68423215	rs28649231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.1		rs28649231-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1107	chr14	68432114	68432114	rs560725045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q24.1	RAD51B	rs560725045-CT	0.198767	3E-9		0.016712902	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr14	68435809	68435810	rs113599586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs113599586-T	0.144351	3E-35				Affymetrix, Illumina [24332387] (imputed)	N
1107	chr14	68435809	68435810	rs113599586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q24.1	NR	rs113599586-T	0.175612	2E-33		0.029388	[0.025-0.034] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1107	chr14	68435809	68435810	rs113599586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs113599586-T	0.149514	1E-27				Affymetrix, Illumina [24246363] (imputed)	N
1107	chr14	68435809	68435810	rs113599586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q24.1	NR	rs113599586-T	0.175598	7E-30		0.027177	[0.022-0.032] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1107	chr14	68451247	68451248	rs17783304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.1	RAD51B	rs17783304-C	0.174389	1E-23		0.02921773	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1107	chr14	68461831	68461832	rs11850946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q24.1		rs11850946-C	NR	4E-20		0.0279	[0.022-0.034] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1107	chr14	68461831	68461832	rs11850946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.1	RAD51B	rs11850946-C	0.174583	2E-15		0.0233694	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr14	68462623	68462624	rs10139548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs10139548-A	0.177035	1E-12				Affymetrix, Illumina [24653286] (imputed)	N
1107	chr14	68463351	68463352	rs11848769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q24.1		rs11848769-G	0.829	8E-28				Affymetrix [10369434] (imputed)	N
1107	chr14	68463351	68463352	rs11848769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs11848769-A	0.142688	2E-77				Affymetrix, Illumina [24588908] (imputed)	N
1107	chr14	68463351	68463352	rs11848769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q24.1	NR	rs11848769-A	0.172269	9E-77		0.045006	[0.04-0.05] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1107	chr14	68466361	68466362	rs72725151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q24.1		rs72725151-A	NR	2E-23		0.0263	[0.021-0.031] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1107	chr14	68471069	68471070	rs60415085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	RAD51B	rs60415085-T	0.175774	6E-33		0.035508543	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1107	chr14	68474877	68474878	rs72725156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs72725156-C	0.134681	9E-13				Affymetrix, Illumina [24558453] (imputed)	N
1107	chr14	68476879	68476880	rs72725158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.1	RAD51B	rs72725158-C	0.156623	1E-59		0.05056973	[0.044-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr14	68481566	68481568	rs369495964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q24.1	RAD51B	rs369495964-C	0.1671	7E-19		0.04376755	[0.034-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1107	chr14	68481566	68481568	rs369495964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q24.1	RAD51B	rs369495964-C	0.1672	3E-30		0.05613456	[0.047-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1107	chr14	68488673	68488674	rs140825531	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	14q24.1	RAD51B	rs140825531-?		6E-10	(Infliximab)	1.44	[0.99-1.89] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1107	chr14	68493157	68493158	rs11158716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.1		rs11158716-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1107	chr14	68493157	68493158	rs11158716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.1		rs11158716-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1107	chr14	68500953	68500954	rs72725168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q24.1		rs72725168-T	NR	3E-17		0.0257	[0.02-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1107	chr14	68510772	68510773	rs72725174	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	14q24.1	RAD51B	rs72725174-T	0.1629	3E-15		0.03792288	[0.028-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1107	chr14	68514275	68514276	rs11158717	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q24.1	RAD51B	rs11158717-?	NR	2E-9		1.0619093	NR	Affymetrix [9154080] (imputed)	N
1107	chr14	68516985	68516985	rs147245086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.1	RAD51B	rs147245086-TTTTTC	0.171169	9E-20		0.0278429	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr14	68520905	68520906	rs8022206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	RAD51B	rs8022206-A	0.1712	5E-15		0.03752097	[0.028-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1107	chr14	68520905	68520906	rs8022206	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	14q24.1	RAD51L1	rs8022206-G	NR	2E-10		3.197	[2.22-4.18] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1107	chr14	68525096	68525097	rs1980655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q24.1		rs1980655-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1107	chr14	68528027	68528028	rs112764045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.1	RAD51B	rs112764045-T	0.157641	2E-17		0.02583046	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr14	68554768	68554769	rs74773190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs74773190-G	0.132463	3E-22				Affymetrix, Illumina [20825802] (imputed)	N
1108	chr14	68554768	68554769	rs74773190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q24.1	NR	rs74773190-G	0.157207	3E-25		0.0277	[0.022-0.033] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1108	chr14	68559335	68559336	rs144403523	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q24.1	RAD51B	rs144403523-C	0.1586	3E-9		0.02895707	[0.019-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr14	68599491	68599492	rs2588833	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	14q24.1		rs2588833-?	NR	8E-6		1.0883	[1.05-1.13]	NR [682398]	N
1108	chr14	68607022	68607023	rs2767365	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.1		rs2767365-?	NR	4E-10		0.0164242	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr14	68617268	68617269	rs6573817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q24.1		rs6573817-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1108	chr14	68617268	68617269	rs6573817	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.1		rs6573817-?	NR	3E-15		0.021074	[0.016-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr14	68629266	68629267	rs2478777	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q24.1	RAD51B	rs2478777-C	0.164008	2E-13		0.0184721	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
1108	chr14	68637905	68637906	rs1958113	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.1		rs1958113-?	NR	2E-12		0.019044	[0.013-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1108	chr14	68641096	68641096	rs5809370	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	14q24.1		rs5809370-C	NR	9E-7		1.084	NR	Affymetrix [7846216] (imputed)	N
1108	chr14	68651340	68651341	rs1536457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q24.1	RAD51B	rs1536457-A	0.783607	3E-9		0.016679782	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr14	68651341	68651342	rs59333573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q24.1	NR	rs59333573-A	0.781283	1E-10		0.015999	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1108	chr14	68651341	68651342	rs59333573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q24.1	NR	rs59333573-A	0.781292	3E-11		0.016398	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1108	chr14	68660427	68660428	rs2588809	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q24.1		rs2588809-T	NR	1E-14		1.07	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1108	chr14	68660427	68660428	rs2588809	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.1	RAD51B	rs2588809-T	0.17	6E-14	(EA)	1.06	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1108	chr14	68660427	68660428	rs2588809	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	14q24.1	NR	rs2588809-T	0.16	4E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1108	chr14	68660427	68660428	rs2588809	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	14q24.1	NR	rs2588809-T	0.16	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1108	chr14	68660427	68660428	rs2588809	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q24.1	RAD51L1	rs2588809-T	0.16	1E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1108	chr14	68662358	68662359	rs56267624	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	14q24.1	RAD51B	rs56267624-?	NR	2E-8		1.14	[1.09-1.2]	Affymetrix [74888535] (imputed)	N
1108	chr14	68681475	68681476	rs1744947	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.1	NR	rs1744947-T	0.16	2E-14	(EA)	0.0645	[0.048-0.081] unit increase	Illumina [~ 11800000] (imputed)	N
1109	chr14	68698229	68698230	rs1314911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q24.1	NR	rs1314911-A	0.858906	7E-10		0.0258707	[0.018-0.034] unit increase	Affymetrix [16580851] (imputed)	N
1109	chr14	68699593	68699594	rs1314913	23001122	Orr N	2012-09-23	Nat Genet	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male)	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	14q24.1	RAD51B	rs1314913-?	NR	3E-13		1.57	[1.39-1.77]	Illumina [447760]	N
1109	chr14	68728424	68728425	rs28498223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	14q24.1		rs28498223-T	NR	5E-9		0.0606	[0.04-0.081] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1109	chr14	68731457	68731458	rs4902562	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	14q24.1	RAD51B	rs4902562-A		2E-6		1.13	[NR]	Illumina [> 644674] (imputed)	N
1109	chr14	68731457	68731458	rs4902562	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	14q24.1	RAD51B	rs4902562-A		6E-10		1.14	[1.09-1.19]	Illumina [644674]	N
1109	chr14	68732305	68732307	rs10551501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	14q24.1		rs10551501-A	NR	3E-12		0.0575	[0.041-0.074] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1109	chr14	68732305	68732305	rs770792291	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	14q24.1	RAD51B	rs770792291-A	0.279035889541779	7E-12		0.05030541	[0.036-0.065] unit increase	Affymetrix [35186738] (imputed)	N
1109	chr14	68743306	68743307	rs10131490	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	14q24.1	RAD51B	rs10131490-G	0.279637	3E-12		1.049668	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	14q24.1		rs3784099-A	NR	3E-11		0.0654	[0.046-0.085] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	14q24.1		rs3784099-A	NR	2E-14		0.177104	[0.13-0.22] unit decrease	NR [2787054] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	14q24.1		rs3784099-A	NR	8E-17		0.203016	[0.16-0.25] unit decrease	NR [5054572] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	14q24.1	RAD51B	rs3784099-G	0.71	4E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	14q24.1	RAD51B	rs3784099-A	0.28051	2E-10		0.06491178	[0.045-0.085] unit decrease	Affymetrix [7288503] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	14q24.1		rs3784099-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	14q24.1	RAD51B	rs3784099-?	NR	2E-8		1.0615711	[1.04-1.08]	Illumina [13747813] (imputed)	N
1109	chr14	68749926	68749927	rs3784099	22232737	Shu XO	2012-01-09	Cancer Res	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	14q24.1	RAD51L1	rs3784099-A	NR	3E-7	(Recurrence)	1.43	[1.25-1.64]	Affymetrix [613031]	N
1109	chr14	68749926	68749927	rs3784099	22232737	Shu XO	2012-01-09	Cancer Res	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	14q24.1	RAD51L1	rs3784099-A	NR	1E-7	(Total Mortality)	1.49	[1.28-1.72]	Affymetrix [613031]	N
1109	chr14	68752642	68752643	rs8008961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	14q24.1	NR	rs8008961-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1109	chr14	68752642	68752643	rs8008961	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q24.1	RAD51B	rs8008961-?	NR	2E-16		0.605	[0.46-0.75] unit increase	Affymetrix [11100000] (imputed)	N
1109	chr14	68752642	68752643	rs8008961	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	14q24.1	RAD51B	rs8008961-?	NR	1E-8		1.05		NR [74888535] (imputed)	N
1109	chr14	68752642	68752643	rs8008961	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	14q24.1	RAD51L1	rs8008961-A	0.2944	6E-6	(EA)	2.44	[1.67-3.56]	Affymetrix [up to 644046]	N
1109	chr14	68753286	68753287	rs2208397	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	14q24.1	NR	rs2208397-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1109	chr14	68753592	68753593	rs911263	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	14q24.1	RAD51B	rs911263-T	0.71	3E-8		1.083		Illumina [715631] (imputed)	N
1109	chr14	68753592	68753593	rs911263	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	14q24.1	RAD51B	rs911263-T	0.71	3E-8		1.083		Illumina [715631] (imputed)	N
1109	chr14	68753592	68753593	rs911263	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	14q24.1	RAD51B	rs911263-C	0.29	5E-20				NR [> 9500000] (imputed)	N
1109	chr14	68753592	68753593	rs911263	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	14q24.1	RAD51B	rs911263-?	NR	3E-8		1.1235955	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
1109	chr14	68753592	68753593	rs911263	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	14q24.1	RAD51L1, RAD51B	rs911263-T	0.73	2E-9		1.24	NR	Illumina [1143634] (imputed)	N
1109	chr14	68753592	68753593	rs911263	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	14q24.1	RAD51B	rs911263-A	0.72	3E-8		1.1111112	[1.06-1.15]	Illumina [133816] (imputed)	N
1109	chr14	68753592	68753593	rs911263	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	14q24.1	ACTN1	rs911263-?	NR	2E-6		1.1205738		Illumina [129464] (imputed)	N
1109	chr14	68753592	68753593	rs911263	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	14q24.1	RAD51B	rs911263-A	0.71	1E-10		1.26	[1.17-1.35]	Illumina [237619] (imputed)	N
1109	chr14	68753592	68753593	rs911263	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	14q24.1	NR	rs911263-A		4E-6		1.25	[1.14-1.37]	Illumina [109812]	N
1109	chr14	68753592	68753593	rs911263	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	14q24.1	RAD51L1	rs911263-T	0.71	2E-11		1.29	[1.20-1.39]	Illumina [507467]	N
1109	chr14	68754416	68754417	rs2104047	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	14q24.1	RAD51B	rs2104047-T	0.36	2E-13		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1109	chr14	68754694	68754695	rs1885013	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	14q24.1	RAD51B	rs1885013-?	NR	3E-25		1.085	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1109	chr14	68754694	68754695	rs1885013	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	14q24.1	RAD51B	rs1885013-G	NR	3E-13		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	14q24.1		rs1950897-T	NR	1E-13		1.11	[1.08-1.14]	NR [13810676] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	14q24.1	RAD51B	rs1950897-C	0.296881	3E-16		1.0559747	[1.04227299178085-1.06985664256798]	NR [9572556] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	14q24.1	RAD51B	rs1950897-C	0.2869	8E-13				Affymetrix [15688218] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	14q24.1	NR	rs1950897-C	0.2869	3E-13		1.045	[1.033-1.057]	Affymetrix [15688218] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	14q24.1	RAD51B, ZFYVE26, ZFF36L1	rs1950897-C	0.287	1E-8		1.096	[1.062-1.131]	Affymetrix [10894596] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	14q24.1		rs1950897-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.1		rs1950897-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q24.1	RAD51B	rs1950897-T	NR	1E-9		0.099176	[0.058-0.14] unit increase	Illumina [8380626] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q24.1	RAD51B	rs1950897-T	0.71	3E-7	(EA)	0.08826	[0.055-0.122] unit increase	Illumina [8380626] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q24.1	RAD51B	rs1950897-T	0.76	8E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1109	chr14	68760140	68760141	rs1950897	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q24.1	RAD51B	rs1950897-T	0.71	5E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1109	chr14	68760526	68760527	rs7140939	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	14q24.1	RAD51B	rs7140939-A	0.403	2E-10		0.027	[0.019-0.035] unit decrease	NR [NR] (imputed)	N
1109	chr14	68760526	68760527	rs7140939	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	14q24.1	RAD51B	rs7140939-A	0.403	2E-10		0.027	[0.019-0.035] unit decrease	NR [7647814] (imputed)	N
1109	chr14	68760526	68760527	rs7140939	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	14q24.1	NR	rs7140939-A	0.3916	1E-12		1.045	[1.033-1.057]	Affymetrix [15688218] (imputed)	N
1109	chr14	68760526	68760527	rs7140939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	14q24.1		rs7140939-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1109	chr14	68769198	68769199	rs61985136	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	14q24.1	RAD51B	rs61985136-?	NR	2E-10	(EA)	1.1111112		Illumina [12023830] (imputed)	N
1109	chr14	68772609	68772610	rs1108590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q24.1		rs1108590-A	0.42	7E-14		7.49	z score increase	Affymetrix [9061022] (imputed)	N
1109	chr14	68772609	68772610	rs1108590	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q24.1	NR	rs1108590-A	0.3513	9E-16				NR [9056863] (imputed)	N
1109	chr14	68781594	68781595	rs12890110	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 17)	3,566 European ancestry individuals	4,680 European ancestry individuals	14q24.1		rs12890110-C	0.355542954	2E-9				Illumina [7417619] (imputed)	N
1109	chr14	68785076	68785077	rs8017304	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	14q24.1	RAD51B	rs8017304-A	0.61	9E-11		1.11	[1.08-1.14]	Affymetrix, Illumina [2442884] (imputed)	N
1109	chr14	68788923	68788924	rs1956529	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	14q24.1	RAD51L1	rs1956529-T	0.38	3E-8				Illumina [300766]	N
1109	chr14	68799101	68799102	rs2180769	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	14q24.1	RAD51B, LOC100996664, ZFP36L1, LOC105370548, ZFYVE26, ACTN1	rs2180769-A	0.36063	7E-13		1.0479324	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
1110	chr14	68813114	68813115	rs1570106	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q24.1	RAD51L1	rs1570106-T	0.2	8E-9		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1110	chr14	68836368	68836369	rs10483809	28011710	Benyamin B	2016-12-22	Hum Mol Genet	Identification of novel loci affecting circulating chromogranins and related peptides.	Circulating chromogranin peptide levels	up to 540 European American and Mexican American individuals, up to 1,267 individuals	NA	14q24.1	intergenic	rs10483809-?	NR	2E-6	(CHGA361-372)	0.295	[0.17-0.42] unit decrease	Illumina [at least 2587527] (imputed)	N
1110	chr14	68843604	68843605	rs2025009	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nonsteroidal anti-inflammatory drugs)	144 European ancestry cases, 10,588 European ancestry controls	NA	14q24.1		rs2025009-?		7E-7		1.81	1.43-2.29	Illumina [505740] (imputed)	N
1110	chr14	68856134	68856135	rs61039700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q24.1	NR	rs61039700-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1110	chr14	68864456	68864457	rs11625452	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	14q24.1	NR	rs11625452-T		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1110	chr14	68873526	68873527	rs12435046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q24.1		rs12435046-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1110	chr14	68875103	68875104	rs148855761	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TENM3	5,360 Icelandic ancestry individuals	NA	14q24.1		rs148855761-G	0.01087	2E-13		0.0986426	[0.072-0.125] unit increase	Illumina [7506463] (imputed)	N
1110	chr14	68877528	68877529	rs35190649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.1		rs35190649-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1110	chr14	68882383	68882384	rs17755674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q24.1	NR	rs17755674-G	NR	3E-9		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1110	chr14	68905973	68905974	rs11158743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.1		rs11158743-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1110	chr14	68913967	68913968	rs4902590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q24.1		rs4902590-G	NR	1E-17		0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1110	chr14	68922020	68922021	rs4902592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q24.1		rs4902592-C	0.509712	8E-12		0.0138187	[0.0099-0.0178] unit increase	Illumina [13479295] (imputed)	N
1110	chr14	68922020	68922021	rs4902592	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q24.1	RAD51B	rs4902592-?	NR	2E-13		0.021066267	[0.015-0.027] unit increase	Illumina [27896057] (imputed)	N
1110	chr14	68923907	68923908	rs2093202	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q24.1	NR	rs2093202-A	NR	2E-9		1.041	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1111	chr14	68962265	68962266	rs77651953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	14q24.1		rs77651953-T	NR	2E-8		0.0718	[0.047-0.097] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1111	chr14	68962839	68962840	rs12587231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q24.1	RAD51B	rs12587231-C	NR	8E-9		0.0163952	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1111	chr14	68971451	68971452	rs75197674	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	14q24.1		rs75197674-?	NR	6E-7		0.046	[0.028-0.064] unit decrease	Affymetrix [9906178] (imputed)	N
1111	chr14	68971451	68971452	rs75197674	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	14q24.1		rs75197674-?	NR	6E-9		0.064	[0.042-0.086] unit decrease	Affymetrix [9906178] (imputed)	N
1111	chr14	68978984	68978985	rs35378451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	14q24.1		rs35378451-C	NR	4E-15		0.095	[0.071-0.119] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1111	chr14	68979834	68979835	rs11624333	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	14q24.1		rs11624333-T	NR	5E-8		1.084	[1.053-1.116]	Affymetrix [7846216] (imputed)	N
1111	chr14	68979834	68979835	rs11624333	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	14q24.1		rs11624333-T	NR	4E-11		1.0875	NR	Affymetrix [7846216] (imputed)	N
1111	chr14	68979834	68979835	rs11624333	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.1	NR	rs11624333-C	0.2595	7E-42	(EA)	0.0968	[0.083-0.111] unit decrease	Illumina [~ 11800000] (imputed)	N
1111	chr14	68986156	68986157	rs11624164	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.1	RAD51L1	rs11624164-A	0.177	5E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1111	chr14	68986998	68986999	rs2842339	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	14q24.1	RAD51B	rs2842339-?	NR	1E-6	(EA)	1.14		Illumina [12023830] (imputed)	N
1111	chr14	68991747	68991747	rs34702092	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	14q24.1	RAD51B	rs34702092-?	NR	5E-8		0.026	[0.035-0.016] unit decrease	Illumina [12039491] (imputed)	N
1111	chr14	68997634	68997635	rs10134446	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q24.1	NR	rs10134446-G	0.42274	2E-9		0.018998	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1111	chr14	69004804	69004805	rs7140266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q24.1		rs7140266-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1111	chr14	69005886	69005887	rs71423318	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	14q24.1		rs71423318-?	NR	3E-7		0.921671	[0.89-0.95]	NR [682398]	N
1111	chr14	69026378	69026379	rs11844632	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	14q24.1	RAD51B	rs11844632-A	NR	3E-10	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
1111	chr14	69029202	69029203	rs2158357	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q24.1		rs2158357-?	NR	2E-8				NR [9705931] (imputed)	N
1111	chr14	69034681	69034682	rs999737	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	14q24.1		rs999737-?	NR	3E-6		0.963504	[0.95-0.98]	NR [688737]	N
1111	chr14	69034681	69034682	rs999737	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q24.1		rs999737-T	NR	1E-38		0.91	[0.9-0.92]	Affymetrix, Illumina [NR] (imputed)	N
1111	chr14	69034681	69034682	rs999737	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.1	RAD51B	rs999737-C	0.77	7E-39	(EA)	1.098901	[1.08-1.12] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1111	chr14	69034681	69034682	rs999737	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	14q24.1	NR	rs999737-C	0.77	3E-8		1.0869565	[1.04-1.12] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1111	chr14	69034681	69034682	rs999737	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	14q24.1	NR	rs999737-C	0.77	4E-13		1.0869565	[1.06-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1111	chr14	69034681	69034682	rs999737	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	14q24.1	NR	rs999737-C	0.77	2E-21		1.0869565	[1.06-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1111	chr14	69034681	69034682	rs999737	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q24.1	RAD51L1	rs999737-C	0.77	3E-19		1.09	[1.06-1.11]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1111	chr14	69034681	69034682	rs999737	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	14q24.1	RAD51L1	rs999737-C	0.76	2E-7		1.06	[1.01-1.14] (Het)	Illumina [528173]	N
1111	chr14	69037319	69037320	rs11628293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q24.1		rs11628293-G	0.23	5E-43		13.75	z score increase	Affymetrix [9061022] (imputed)	N
1111	chr14	69037319	69037320	rs11628293	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q24.1		rs11628293-G	0.23	4E-14		7.57	z score increase	Affymetrix [9061022] (imputed)	N
1111	chr14	69037319	69037320	rs11628293	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q24.1	NR	rs11628293-G	0.2825	6E-14				NR [9056863] (imputed)	N
1111	chr14	69045459	69045460	rs4902603	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.1	ZFP36L1	rs4902603-?	NR	6E-8	(xanthine)	0.23991948	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1111	chr14	69063563	69063564	rs10136315	33836062	Kong XZ	2021-04-09	Cereb Cortex	Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew.	Brain asymmetrical skew (vertical)	33,996 European ancestry individuals	NA	14q24.1	RAD51B	rs10136315-A		3E-7		6.0738E-4	[0.00037-0.00084] unit decrease	Affymetrix [9904141] (imputed)	N
1112	chr14	69078997	69078998	rs7153168	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	14q24.1	NR	rs7153168-?	NR	1E-6			[NR]	Illumina [5432814] (imputed)	N
1112	chr14	69108085	69108086	rs12436964	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	14q24.1	RAD51B	rs12436964-T		2E-6		1.31	[1.17-1.47]	Illumina [10258281] (imputed)	N
1112	chr14	69123759	69123760	rs8006682	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q24.1	RAD51B	rs8006682-?	NR	7E-6		0.138	[0.087-0.189] unit increase	Illumina [at least 13000000] (imputed)	N
1112	chr14	69126743	69126744	rs7141529	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	14q24.1	NR	rs7141529-C	0.5	2E-10		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
1112	chr14	69126743	69126744	rs7141529	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	14q24.1	RAD51B, ZFP36L1, ACTN1	rs7141529-G	0.5	3E-10		1.09	[1.06-1.12]	Illumina [~ 2600000] (imputed)	N
1112	chr14	69131592	69131593	rs11629144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.1		rs11629144-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1112	chr14	69134263	69134264	rs767127	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q24.1	NR	rs767127-G	NR	5E-14		1.052	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1112	chr14	69142389	69142390	rs4902630	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	14q24.1	RAD51B	rs4902630-G	0.21	4E-7	(male)	0.26	[0.16-0.36] unit increase	Illumina [6380737] (imputed)	N
1112	chr14	69142389	69142390	rs4902630	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q24.1	NR	rs4902630-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1112	chr14	69149371	69149372	rs72729582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q24.1		rs72729582-G	NR	2E-9		0.0234	[0.016-0.031] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1112	chr14	69149371	69149372	rs72729582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q24.1	RAD51B	rs72729582-A	0.927034	2E-11		0.0250334	[0.018-0.032] unit decrease	Affymetrix [NR] (imputed)	N
1112	chr14	69149427	69149428	rs4902632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q24.1		rs4902632-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1112	chr14	69149427	69149428	rs4902632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q24.1		rs4902632-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1112	chr14	69149427	69149428	rs4902632	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	14q24.1	NR	rs4902632-A	0.17	1E-16		0.021	[0.016-0.026] unit increase	Affymetrix [2446094] (imputed)	N
1112	chr14	69149427	69149428	rs4902632	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	14q24.1	NR	rs4902632-A	0.17	5E-8				Affymetrix [2446094] (imputed)	N
1112	chr14	69150884	69150885	rs10144968	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	14q24.1	RAD51B	rs10144968-?	NR	4E-7		1.31	[1.18-1.45]	Illumina [5768242] (imputed)	N
1112	chr14	69166107	69166108	rs117967122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q24.1	NR	rs117967122-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q24.1		rs10138752-T	NR	5E-16		0.0346	[0.026-0.043] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q24.1	RAD51B	rs10138752-T	0.077793	1E-19		0.037823085	[0.03-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs10138752-T	0.0638069	7E-28				Affymetrix, Illumina [24649327] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q24.1	NR	rs10138752-T	0.077277	2E-31		0.040319	[0.034-0.047] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0776	5E-12		0.04641403	[0.033-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0777	1E-11		0.04558894	[0.032-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0777	5E-11		0.04429008	[0.031-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0776	8E-12		0.04593487	[0.033-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0777	3E-10		0.04257004	[0.029-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69179970	69179971	rs10138752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	14q24.1	RAD51B	rs10138752-T	0.0777	5E-11		0.04425733	[0.031-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1112	chr14	69181421	69181422	rs10142607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q24.1		rs10142607-T	NR	3E-12		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1112	chr14	69181421	69181422	rs10142607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q24.1	RAD51B	rs10142607-T	0.147217	1E-12		0.022355862	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr14	69186660	69186661	rs55929214	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q24.1	NR	rs55929214-C	0.076146	2E-17		0.030342	[0.023-0.037] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1112	chr14	69199110	69199111	rs11623906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q24.1	RNU6-921P, RAD51B	rs11623906-A	0.07783	2E-20		0.038395897	[0.03-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1112	chr14	69199110	69199111	rs11623906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q24.1	RNU6-921P, RAD51B	rs11623906-A	0.077892	8E-12		0.02838439	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1112	chr14	69199110	69199111	rs11623906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q24.1	RNU6-921P, RAD51B	rs11623906-A	0.077898	4E-11		0.027445726	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1112	chr14	69199110	69199111	rs11623906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q24.1		rs11623906-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1112	chr14	69201189	69201190	rs8019389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs8019389-T	0.0732639	3E-15				Affymetrix, Illumina [23472807] (imputed)	N
1112	chr14	69203474	69203475	rs59744851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	RNU6-921P	rs59744851-A	0.188271	1E-31		0.03423678	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr14	69207725	69207726	rs112711312	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-977 abundance in stool	5,959 Finnish ancestry individuals	NA	14q24.1		rs112711312-A	0.0113464	4E-9		0.172066	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1113	chr14	69210198	69210199	rs4902642	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	14q24.1	ZFP36L1	rs4902642-G	0.584	2E-10		1.07	[1.11-1.04]	Affymetrix, Illumina [953241] (imputed)	N
1113	chr14	69212884	69212885	rs12589699	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	intergenic	rs12589699-G	0.1379	3E-14		0.04030572	[0.03-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1113	chr14	69213850	69213851	rs194757	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	14q24.1	ZFP36L1	rs194757-?		3E-8		0.86	[0.82-0.91]	Illumina [NR] (imputed)	N
1113	chr14	69224152	69224153	rs9635254	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	14q24.1		rs9635254-?	NR	8E-6		0.39	[0.22-0.56] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1113	chr14	69226930	69226931	rs11625064	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	14q24.1	RNU6-921P	rs11625064-T	0.633616	2E-10				Affymetrix, Illumina [NR] (imputed)	N
1113	chr14	69226930	69226931	rs11625064	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	14q24.1	RNU6-921P	rs11625064-T	0.633616	2E-19				Affymetrix, Illumina [NR] (imputed)	N
1113	chr14	69226930	69226931	rs11625064	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	14q24.1	ZFP36L1	rs11625064-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1113	chr14	69237901	69237902	rs72731535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q24.1	NR	rs72731535-A	0.176662	2E-10		0.018692948	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69237901	69237902	rs72731535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q24.1		rs72731535-A	0.176597	5E-9		0.01702258	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69237901	69237902	rs72731535	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q24.1	NR	rs72731535-G	0.822269	9E-12		0.0253928	[0.018-0.033] unit increase	Affymetrix [16580851] (imputed)	N
1113	chr14	69237924	69237925	rs72731537	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q24.1	ZFP36L1	rs72731537-?	NR	7E-12		1.0736526	NR	Affymetrix [9154080] (imputed)	N
1113	chr14	69239219	69239219	rs151130336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q24.1	NR	rs151130336-TAATAA	0.169017	6E-12		0.020647163	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69240078	69240079	rs11624310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.1		rs11624310-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1113	chr14	69247947	69247948	rs56232028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q24.1		rs56232028-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1113	chr14	69250914	69250915	rs7146217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q24.1	ZFP36L1	rs7146217-T	NR	3E-8		0.0157153	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1113	chr14	69250914	69250915	rs7146217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q24.1	ZFP36L1	rs7146217-T	NR	3E-8		0.0158007	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1113	chr14	69253342	69253343	rs11158763	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	14q24.1	ZFP36L1	rs11158763-T	NR	7E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1113	chr14	69253342	69253343	rs11158763	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	14q24.1	ZFP36L1	rs11158763-T	0.4637	1E-11		0.0134884	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1113	chr14	69253342	69253343	rs11158763	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	14q24.1	ZFP36L1	rs11158763-C	NR	6E-9		1.0400825	[1.03-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
1113	chr14	69253363	69253364	rs12434551	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q24.1	RAD51B	rs12434551-A	NR	4E-17		1.0822	NR	Affymetrix, Illumina [8278136] (imputed)	N
1113	chr14	69254190	69254191	rs4902647	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q24.1	ZFP36L1	rs4902647-G	NR	9E-12		1.11	[1.1-1.13]	Illumina [465434]	N
1113	chr14	69258840	69258841	rs927292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.1		rs927292-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1113	chr14	69259501	69259502	rs11851414	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	14q24.1	ZFP36L1	rs11851414-?	0.221	5E-8		1.13		Illumina [139553]	N
1113	chr14	69259661	69259662	rs1051533	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	14q24.1	ZFP36L1	rs1051533-A	NR	1E-8		1.16	[1.1-1.22]	Illumina [7461261] (imputed)	N
1113	chr14	69260027	69260028	rs57786342	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	14q24.1	ZFP36L1	rs57786342-G	0.7945	4E-11		0.1423	[0.1-0.185] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1113	chr14	69260027	69260028	rs57786342	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	14q24.1	NR	rs57786342-G	NR	4E-6		0.1314	[0.076-0.187] SD units decrease	NR [10700000] (imputed)	N
1113	chr14	69260562	69260563	rs12889006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	14q24.1		rs12889006-C	NR	4E-8		0.0457	[0.029-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1113	chr14	69260562	69260563	rs12889006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	14q24.1		rs12889006-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1113	chr14	69260587	69260588	rs3825568	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	14q24.1		rs3825568-T	NR	6E-12		1.08	[1.06-1.11]	NR [13810676] (imputed)	N
1113	chr14	69260587	69260588	rs3825568	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	14q24.1	ZFP36L1	rs3825568-?	0.56	1E-8	(dominant model)	1.2987013	[1.19-1.43]	Illumina [123003]	N
1113	chr14	69261161	69261162	rs2236263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.1	ZFP36L1	rs2236263-T	0.69252	2E-12		0.01705245	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr14	69261471	69261472	rs2236262	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	14q24.1	ZFP36L1	rs2236262-G	0.7424	6E-6		1.2674271	NR	Illumina [at least 870261] (imputed)	N
1113	chr14	69261471	69261472	rs2236262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.1		rs2236262-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1113	chr14	69261471	69261472	rs2236262	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	14q24.1	ZFP36L1	rs2236262-A	0.5	3E-12		1.08		Illumina [161311]	N
1113	chr14	69263598	69263599	rs1465788	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	14q24.1	intergenic	rs1465788-?	0.71	2E-12		1.16	[1.10-1.25]	Affymetrix, Illumina [841622] (imputed)	N
1113	chr14	69264564	69264564	rs34160920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q24.1		rs34160920-CT	NR	4E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1113	chr14	69264564	69264564	rs34160920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q24.1	ZFP36L1	rs34160920-CT	0.708229	8E-10		0.015081662	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69266022	69266023	rs36132266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	14q24.1		rs36132266-T	NR	2E-8		0.0484	[0.031-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1113	chr14	69267694	69267695	rs1595260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q24.1	ZFP36L1	rs1595260-T	0.713941	2E-9		0.014713109	[0.0099-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69271783	69271784	rs10142466	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q24.1	NR	rs10142466-?	NR	1E-8	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1113	chr14	69271968	69271969	rs971290	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	14q24.1	ZFP36L1	rs971290-?	NR	3E-8		0.1216	unit increase	Illumina [up to 143074]	N
1113	chr14	69272318	69272319	rs4899258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q24.1	NR	rs4899258-T	NR	4E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1113	chr14	69272318	69272319	rs4899258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.1		rs4899258-T	0.712252	1E-11		0.016634472	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1113	chr14	69272318	69272319	rs4899258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.1		rs4899258-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1113	chr14	69272642	69272643	rs7149271	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	14q24.1		rs7149271-C	0.285578	4E-8		0.0248532	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1113	chr14	69273089	69273090	rs367677	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q24.1		rs367677-A	0.76	4E-10				Affymetrix [10369434] (imputed)	N
1113	chr14	69273089	69273090	rs367677	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q24.1	ZFP36L1	rs367677-A	0.76	1E-13		0.0167198	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1113	chr14	69273089	69273090	rs367677	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q24.1	ZFP36L1	rs367677-A	0.759992	4E-14		0.0174973	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1113	chr14	69273089	69273090	rs367677	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	14q24.1	ZFP36L1	rs367677-G	0.22	2E-12		0.0077	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1113	chr14	69273904	69273905	rs194749	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q24.1	NR	rs194749-G	0.2289	1E-7	(EA)	1.0796018	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1113	chr14	69273904	69273905	rs194749	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q24.1	ZFP36L1	rs194749-C	0.226	3E-10		1.075	[1.039-1.111]	Affymetrix, Illumina [1230000] (imputed)	N
1113	chr14	69278203	69278204	rs4899260	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q24.1		rs4899260-T	0.2495	7E-9		0.14591219	[0.096-0.196] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1113	chr14	69278203	69278204	rs4899260	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q24.1		rs4899260-T	0.2496	3E-10		0.10106237	[0.07-0.132] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1113	chr14	69278203	69278204	rs4899260	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	14q24.1	intergenic	rs4899260-T	0.274018595167883	9E-6		0.22723566	[0.13-0.33] unit increase	Illumina [247039]	N
1113	chr14	69278203	69278204	rs4899260	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	14q24.1	ZFP36L1	rs4899260-A	0.26	4E-7		1.12	[1.07-1.16]	Illumina [292387]	N
1113	chr14	69285263	69285264	rs4899263	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	14q24.1	ZFP36L1	rs4899263-G	0.469	6E-9	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1113	chr14	69287482	69287483	rs194742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.1		rs194742-C	0.834382	1E-10		0.019553093	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr14	69288431	69288432	rs194741	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		14q24.1	ZFP36L1, ACTN1	rs194741-?	NR	8E-14		0.0092	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1113	chr14	69289311	69289312	rs1274955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q24.1	NR	rs1274955-C	0.779568	3E-15		0.018938	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1113	chr14	69290509	69290509	rs143550278	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	14q24.1		rs143550278-T	0.850045	2E-8		0.0324356	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
1113	chr14	69295447	69295448	rs194714	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		14q24.1	ZFP36L1, ACTN1	rs194714-?	NR	4E-13		0.0086	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1113	chr14	69297985	69297986	rs1296535	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	14q24.1		rs1296535-C	0.221518	2E-9		0.0287185	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1113	chr14	69297985	69297986	rs1296535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q24.1		rs1296535-T	0.778552	2E-10		0.017003896	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr14	69300798	69300799	rs117524719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	14q24.1	NR	rs117524719-A	0.961829	4E-13		0.085769	[0.063-0.109] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1113	chr14	69301834	69301835	rs194740	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	14q24.1		rs194740-T	0.221645	3E-8		0.0268827	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1113	chr14	69301834	69301835	rs194740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs194740-C	0.805532	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
1113	chr14	69302398	69302399	rs4288924	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	14q24.1	ZFP36L1, ACTN1	rs4288924-G	0.48	6E-9		0.0098	[0.0065-0.0131] unit increase	Affymetrix [11709857] (imputed)	N
1113	chr14	69307484	69307485	rs194730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.1		rs194730-G	0.258395	5E-15		0.02055669	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1113	chr14	69310511	69310512	rs174213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q24.1	NR	rs174213-T	0.328384	1E-11		0.013447	[0.0096-0.0173] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1113	chr14	69310511	69310512	rs174213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q24.1	NR	rs174213-T	0.328469	2E-11		0.013314	[0.0094-0.0172] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1113	chr14	69310511	69310512	rs174213	29654602	Laville V	2018-04-13	Exp Dermatol	A Genome-Wide Association Study identifies new genes potentially associated with eyelid sagging.	Upper eyelid sagging severity	29 French ancestry individuals with grade 0-I sagging, 107 French ancestry individuals with grade II sagging, 192 French ancestry individuals with grade III sagging, 174 French ancestry individuals with grade IV-V sagging	NA	14q24.1	Intergenic	rs174213-T	0.33	2E-6		1.6	[1.32-1.93]	Illumina [795063]	N
1113	chr14	69311340	69311341	rs79509103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	14q24.1		rs79509103-A	0.373344523	3E-9		0.08842661	[0.059-0.118] unit decrease	Illumina [13429513] (imputed)	N
1113	chr14	69314054	69314054	rs11376788	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	14q24.1		rs11376788-A	0.757806	2E-8		0.0267302	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1113	chr14	69314054	69314054	rs11376788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q24.1	NR	rs11376788-AC	0.24278	1E-8		0.00824157	[0.0053-0.0111] unit increase	Affymetrix [16585854] (imputed)	N
1113	chr14	69314054	69314054	rs11376788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q24.1	NR	rs11376788-AC	0.24278	3E-7		0.0084181	[0.0051-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
1113	chr14	69314058	69314059	rs434943	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	14q24.1	ACTN1	rs434943-A	0.31	1E-8	(EA)	0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
1113	chr14	69330727	69330728	rs7149926	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	14q24.1		rs7149926-?	NR	1E-6		4.771962		Affymetrix [710007]	N
1113	chr14	69336945	69336946	rs12586692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	BLZF2P	rs12586692-C	0.243328	4E-24		0.027442936	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr14	69342249	69342250	rs2073307	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q24.1		rs2073307-C	0.473	7E-17				Affymetrix [10369434] (imputed)	N
1114	chr14	69342249	69342250	rs2073307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	ACTN1	rs2073307-T	0.528	1E-28		0.03994193	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1114	chr14	69343405	69343406	rs117585062	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	14q24.1	ACTN1	rs117585062-G	0.0088	7E-7		0.263	[0.159-0.366] unit increase	Illumina [11914280] (imputed)	N
1114	chr14	69352763	69352764	rs17835769	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	14q24.1	ACTN1	rs17835769-T	NR	4E-6		0.0727107	[0.042-0.104] unit increase	Illumina [13520550] (imputed)	N
1114	chr14	69360630	69360631	rs12050161	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	14q24.1	ACTN1	rs12050161-T	0.84	4E-6	(Age 20-60 years)	0.07	[0.040-0.100] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1114	chr14	69364952	69364953	rs3784133	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.1	NR	rs3784133-G	0.01045	1E-8	(SERPINH1)	0.02851	NR unit increase	Illumina [1671387] (imputed)	N
1114	chr14	69369962	69369963	rs3784134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q24.1		rs3784134-T	0.1764	7E-15		0.0340732	[0.025-0.043] unit increase	Illumina [13478928] (imputed)	N
1114	chr14	69396388	69396389	rs3784138	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q24.1	ACTN1	rs3784138-?	NR	2E-11		0.03059	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1114	chr14	69408696	69408697	rs2268983	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	14q24.1	ACTN1	rs2268983-?	0.51	7E-6	(CPDBI)	1.52	[NR]	Illumina [~ 518000]	N
1114	chr14	69415322	69415323	rs2268981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	ACTN1	rs2268981-A	0.076403	7E-11		0.028004766	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1114	chr14	69424553	69424554	rs2268972	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	14q24.1	NR	rs2268972-T	NR	9E-6		1.1125	NR	Illumina [at least 560000] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q24.1		rs117672662-C	NR	2E-46		0.3857	[0.33-0.44] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	14q24.1		rs117672662-C	0.011601	2E-30		20.988445	[17.39-24.58] unit decrease	NR [NR]	N
1114	chr14	69425466	69425467	rs117672662	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	14q24.1		rs117672662-T	0.053	8E-45		0.3053	[0.26-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	14q24.1		rs117672662-T	0.0409	5E-23		0.4687	[0.38-0.56] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.1	ACTN1	rs117672662-C	0.00187400000000004	5E-11		0.17761326	[0.12-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q24.1	ACTN1	rs117672662-C	0.00187400000000004	6E-25		0.27916458	[0.23-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.1	ACTN1	rs117672662-C	0.00187300000000001	3E-36		0.33953863	[0.29-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	ACTN1	rs117672662-C	0.00187599999999999	3E-51		0.40656295	[0.35-0.46] unit increase	Affymetrix [93095623] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	9,367 Hispanic or Latin American individuals	NA	14q24.1	NR	rs117672662-T	0.960198	1E-18		0.317111	[0.25-0.39] SD units increase	Affymetrix, Illumina [26925389] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	2,810 Hispanic or Latin American individuals	NA	14q24.1	NR	rs117672662-T	0.969857651	3E-10		0.5063	[0.35-0.66] SD units decrease	Affymetrix, Illumina [24878602] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	14q24.1	NR	rs117672662-?	NR	4E-42		18.86567	[16.15-21.58] unit decrease	Illumina [30743395] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	14q24.1	ACTN1	rs117672662-C	0.0023	1E-16		0.3333976	[0.25-0.41] unit increase	Affymetrix [~ 2500000] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	ACTN1	rs117672662-C	0.0023	2E-27		0.4413049	[0.36-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
1114	chr14	69425466	69425467	rs117672662	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	14q24.1	ACTN1	rs117672662-T	0.94	1E-28		0.604	[0.50-0.71] unit increase	Illumina [2232944] (imputed)	N
1114	chr14	69426388	69426389	rs76745467	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q24.1	ACTN1	rs76745467-C	0.02	9E-7		0.2707	[0.16-0.38] unit increase	Illumina [~ 9000000] (imputed)	N
1114	chr14	69426388	69426389	rs76745467	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	14q24.1	ACTN1	rs76745467-C	0.02	2E-6	(EA)	0.2634	[0.16-0.37] unit increase	Illumina [~ 9000000] (imputed)	N
1114	chr14	69426616	69426617	rs4902681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.1	Intergenic	rs4902681-T	0.7283	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1114	chr14	69430369	69430370	rs2268967	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	14q24.1	ACTN1	rs2268967-A	0.228056	1E-8		0.08002151	[0.053-0.107] unit increase	Affymetrix [7288503] (imputed)	N
1114	chr14	69437140	69437141	rs35399713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	14q24.1		rs35399713-A	NR	3E-9		0.0604	[0.041-0.08] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1114	chr14	69446003	69446004	rs528259074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q24.1	ACTN1	rs528259074-T	0.00415200000000004	4E-9		0.10679093	[0.071-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr14	69452087	69452088	rs10220411	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q24.1		rs10220411-A	0.738	6E-15				Affymetrix [10369434] (imputed)	N
1114	chr14	69452087	69452088	rs10220411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.1	ACTN1-AS1	rs10220411-G	0.262612	5E-24		0.026299123	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1114	chr14	69452087	69452088	rs10220411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	ACTN1-AS1	rs10220411-G	0.262611	2E-54		0.04009481	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1114	chr14	69452087	69452088	rs10220411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q24.1	ACTN1-AS1	rs10220411-G	0.2615	2E-15		0.0329713	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1114	chr14	69452087	69452088	rs10220411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	ACTN1-AS1	rs10220411-G	0.2616	1E-22		0.04042315	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1114	chr14	69459228	69459229	rs242105	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q24.1	NR	rs242105-C	0.4085	4E-11		0.039	[0.027-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1115	chr14	69480380	69480381	rs761898	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	14q24.1	NR	rs761898-A	NR	2E-8		0.01362	NR unit decrease	NR [7259579]	N
1115	chr14	69480380	69480381	rs761898	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	14q24.1	NR	rs761898-A	0.366079	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
1115	chr14	69485346	69485347	rs440712	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	14q24.1	NR	rs440712-A	0.627	6E-10		0.00986341	[0.0067-0.013] unit increase	NR [9732723] (imputed)	N
1115	chr14	69486804	69486805	rs35101890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q24.1	RP11-226F19.1	rs35101890-A	0.199906	2E-12		0.021406593	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr14	69489055	69489056	rs191021045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q24.1	RP11-226F19.1	rs191021045-T	0.0021	3E-21		0.384014	[0.3-0.46] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1115	chr14	69490002	69490003	rs28535566	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	14q24.1	NR	rs28535566-C		9E-6		0.2589	[0.15-0.37] SD units increase	NR [10700000] (imputed)	N
1115	chr14	69490470	69490471	rs73275566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	14q24.1	RP11-226F19.1	rs73275566-G	0.0967	1E-15		0.04959673	[0.037-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1115	chr14	69495374	69495375	rs12885977	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	14q24.1	NR	rs12885977-T	0.331014	2E-8		0.041927572	[0.027-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1115	chr14	69496660	69496661	rs201959763	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.1	intergenic	rs201959763-G	0.2625	2E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix [18391927] (imputed)	N
1115	chr14	69526306	69526307	rs4899280	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q24.1	NR	rs4899280-C	0.67	1E-8		0.0276	[0.018-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1115	chr14	69553419	69553420	rs11158785	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q24.1	NR	rs11158785-?	NR	8E-7		4.926	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1115	chr14	69554234	69554235	rs116735454	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q24.1		rs116735454-T	0.967	4E-27				Affymetrix [10369434] (imputed)	N
1115	chr14	69554234	69554235	rs116735454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.1	DCAF5	rs116735454-C	0.033443	6E-46		0.09003827	[0.078-0.102] unit increase	Affymetrix [93095623] (imputed)	N
1115	chr14	69554234	69554235	rs116735454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q24.1	DCAF5	rs116735454-C	0.033443	1E-80		0.12317525	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1115	chr14	69554234	69554235	rs116735454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs116735454-T	0.966996	3E-139				Affymetrix, Illumina [17210439] (imputed)	N
1115	chr14	69554234	69554235	rs116735454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q24.1	NR	rs116735454-T	0.966657	2E-141		0.136276	[0.13-0.15] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1115	chr14	69575053	69575054	rs1710990	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q24.1	DCAF5	rs1710990-A	NR	5E-9		0.018934965	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1115	chr14	69577593	69577608	rs557869968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q24.1		rs557869968-C	NR	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1115	chr14	69577593	69577608	rs557869968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q24.1		rs557869968-C	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1115	chr14	69594181	69594182	rs1275408	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q24.1	NR	rs1275408-G	0.351	1E-7		0.00598777	[0.0038-0.0082] unit decrease	NR [9732723] (imputed)	N
1115	chr14	69594912	69594913	rs1275411	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.1	NR	rs1275411-T	NR	1E-8		5.667	z score increase	Affymetrix [10847151] (imputed)	N
1115	chr14	69594912	69594913	rs1275411	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q24.1	NR	rs1275411-T	0.341181	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
1115	chr14	69594912	69594913	rs1275411	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	14q24.1	ACTN1	rs1275411-T	0.341181	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
1115	chr14	69594912	69594913	rs1275411	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.1	DCAF5, EXD2, GALNT16	rs1275411-T	0.65882	4E-8		5.482	z score increase	Illumina [18485882] (imputed)	N
1115	chr14	69596082	69596083	rs77327054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q24.1	DCAF5	rs77327054-G	0.0338	8E-42		0.1365124	[0.12-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1116	chr14	69609497	69609498	rs1147479	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q24.1	NR	rs1147479-C	0.362162341113387	6E-9		0.009019024	[0.006-0.0121] unit decrease	NR [NR]	N
1116	chr14	69609497	69609498	rs1147479	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q24.1	NR	rs1147479-C	0.362162341113387	6E-9		0.005744826	[0.0038-0.0077] unit decrease	NR [NR]	N
1116	chr14	69614978	69614979	rs1147478	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q24.1	NR	rs1147478-A	0.362165063646268	9E-9		0.005493338	[0.0036-0.0074] unit decrease	NR [NR]	N
1116	chr14	69640774	69640775	rs79936776	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q24.1	intergenic	rs79936776-G	0.0333	1E-14		0.07871198	[0.059-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
1116	chr14	69662104	69662105	rs2102923	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	14q24.1	ACTN1	rs2102923-A	0.372392	8E-9		5.77	z score decrease	NR [10847151] (imputed)	N
1116	chr14	69702327	69702328	rs6573878	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q24.1	EXD2	rs6573878-T	NR	5E-9		0.021243362	[0.014-0.028] unit increase	Affymetrix [NR]	N
1116	chr14	69703157	69703158	rs3211166	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q24.1	TMEM229B, RAD51B, DCAF5, EXD2, SMOC1	rs3211166-?		6E-11				Affymetrix, Illumina [NR] (imputed)	N
1116	chr14	69703587	69703588	rs4902704	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.1	EXD2	rs4902704-G	NR	1E-8		0.0099571	[0.0066-0.0134] unit increase	Affymetrix [18485882] (imputed)	N
1116	chr14	69703587	69703588	rs4902704	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	14q24.1	NR	rs4902704-G	NR	1E-8		0.01353	[0.0089-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
1116	chr14	69703587	69703588	rs4902704	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q24.1	ACTN1	rs4902704-C	0.376173	2E-9		5.97	z score increase	NR [10847151] (imputed)	N
1116	chr14	69704051	69704052	rs4899292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q24.1		rs4899292-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1116	chr14	69704051	69704052	rs4899292	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	14q24.1	NR	rs4899292-A	0.340446	2E-8		5.61	z score decrease	NR [10847151] (imputed)	N
1116	chr14	69704051	69704052	rs4899292	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.1	intergenic	rs4899292-A	0.34045000000000003	6E-8		5.41	z score decrease	Illumina [18485882] (imputed)	N
1116	chr14	69708240	69708241	rs1043254	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q24.1	NR	rs1043254-G	0.244533	8E-9		0.04210653	[0.028-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1116	chr14	69708240	69708241	rs1043254	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q24.1	Intergenic	rs1043254-A	0.23	7E-9		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1116	chr14	69709372	69709373	rs3173	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q24.1		rs3173-?	NR	1E-8				NR [7857346] (imputed)	N
1116	chr14	69712436	69712437	rs28612284	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q24.1	ENSG00000258520	rs28612284-T	NR	4E-8		5.51	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1116	chr14	69716956	69716957	rs17106817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q24.1	Intergenic	rs17106817-T	0.7253	8E-12	(MTAG)	0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1116	chr14	69716956	69716957	rs17106817	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q24.1	NR	rs17106817-T	NR	2E-8		5.591	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1117	chr14	69739035	69739036	rs8016075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.1		rs8016075-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1117	chr14	69746890	69746891	rs8005903	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.1	EXDL2	rs8005903-?	NR	8E-6	(TAG 52:4)	0.16238412	[0.091-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
1117	chr14	69747045	69747046	rs11158800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q24.1		rs11158800-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1117	chr14	69747045	69747046	rs11158800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.1	Intergenic	rs11158800-A	0.5053	1E-10	(MTAG)	0.0107	[0.0076-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1117	chr14	69747045	69747046	rs11158800	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.1		rs11158800-A	0.5044	7E-11		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1117	chr14	69753368	69753369	rs12890931	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q24.1	NA	rs12890931-T	0.6324	4E-9		0.0103	[0.0068-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
1117	chr14	69753368	69753369	rs12890931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.1		rs12890931-T	0.6306	1E-10	(conditional-joint)	0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1117	chr14	69753368	69753369	rs12890931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.1	Intergenic	rs12890931-T	0.6306	3E-12	(MTAG)	0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1117	chr14	69773985	69773986	rs12435957	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.1	NR	rs12435957-?	NR	2E-53				Affymetrix [NR]	N
1117	chr14	69789754	69789755	rs3902951	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q24.1	GALNT16	rs3902951-T	0.762853	1E-10		0.010523	[0.0073-0.0137] unit decrease	Affymetrix [12370749]	N
1117	chr14	69789754	69789755	rs3902951	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine-ether levels	2,045 European ancestry individuals	NA	14q24.1	GALNT16	rs3902951-G	NR	2E-8	(PEO(18:1;0-18:2;0))	0.1892	[0.12-0.26] unit increase	Illumina [~ 9300000] (imputed)	N
1117	chr14	69789754	69789755	rs3902951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q24.1		rs3902951-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1117	chr14	69790777	69790778	rs35277540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q24.1	NR	rs35277540-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1117	chr14	69793474	69793475	rs12100668	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT16	5,365 Icelandic ancestry individuals	NA	14q24.1		rs12100668-G	0.4018	1E-20		0.173225	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
1117	chr14	69793474	69793475	rs12100668	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.1	GALNT16	rs12100668-G	0.40765625	4E-15	(GALNT16, 8923_94_3)	0.19383755	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1117	chr14	69794550	69794551	rs12894211	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q24.1	GALNTL1	rs12894211-C	0.757	5E-6		0.021	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1117	chr14	69794550	69794551	rs12894211	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q24.1	GALNTL1	rs12894211-C	0.756	7E-6	(EA)	0.021	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1117	chr14	69803199	69803200	rs1275679	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q24.1	NR	rs1275679-A	0.464	6E-9		0.00632623	[0.0042-0.0085] unit decrease	NR [9732723] (imputed)	N
1117	chr14	69832500	69832500	rs147678983	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.1	GALNT16	rs147678983-GA	0.14	1E-12	(Polypeptide N-acetylgalactosaminyltransferase 16, GALNT16.8923.94.3)	0.25	[0.17-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1117	chr14	69840901	69840902	rs34112413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs34112413-G	0.0685142	8E-17				Affymetrix, Illumina [24649327] (imputed)	N
1117	chr14	69840901	69840902	rs34112413	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.1	NR	rs34112413-G	0.0671125	1E-25				Affymetrix, Illumina [23114412] (imputed)	N
1117	chr14	69840901	69840902	rs34112413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q24.1		rs34112413-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1117	chr14	69852939	69852940	rs34765661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q24.1		rs34765661-C	NR	2E-17		0.0358	[0.028-0.044] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1117	chr14	69852939	69852940	rs34765661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q24.1	ERH	rs34765661-C	0.065121	2E-17		0.03812546	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr14	69852939	69852940	rs34765661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q24.1	ERH	rs34765661-C	0.065115	2E-12		0.031456925	[0.023-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr14	69852939	69852940	rs34765661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q24.1	NR	rs34765661-C	0.065516	2E-18		0.03261	[0.025-0.04] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1117	chr14	69852939	69852940	rs34765661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q24.1	NR	rs34765661-C	0.065332	9E-27		0.041722	[0.034-0.049] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1118	chr14	69870943	69870944	rs12884741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q24.1	SLC39A9	rs12884741-G	0.065483	2E-14		0.03412086	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr14	69870943	69870944	rs12884741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q24.1	SLC39A9	rs12884741-G	0.06548	2E-22		0.04358613	[0.035-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr14	69926057	69926058	rs8007933	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	14q24.1	SYNJ2BP	rs8007933-?	NR	2E-8				Illumina [747780]	N
1118	chr14	69965611	69965612	rs61982431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q24.1		rs61982431-A	NR	5E-8		0.0236	[0.015-0.032] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1119	chr14	70079299	70079300	rs3784143	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	14q24.1	KIAA0247	rs3784143-?		8E-6		0.31	[0.17-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1119	chr14	70083646	70083647	rs4902741	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q24.1	KIAA0247	rs4902741-C	0.174919	6E-19		0.026447456	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1119	chr14	70083646	70083647	rs4902741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.1		rs4902741-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1120	chr14	70133531	70133531	rs140339215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.1	KIAA0247	rs140339215-GT	0.174977	5E-10		0.018805617	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr14	70133531	70133531	rs140339215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.1	KIAA0247	rs140339215-GT	0.174945	9E-15		0.0238045	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr14	70133531	70133531	rs140339215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.1	KIAA0247	rs140339215-GT	0.17493	8E-13		0.021001898	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr14	70177552	70177553	rs45508397	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q24.1	KIAA0247	rs45508397-G	0.0111113940323792	7E-6	(G_Aestuariispira_RNT)	1.32377	[0.75-1.9] unit decrease	Illumina [7711310] (imputed)	N
1120	chr14	70178336	70178337	rs945310	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q24.1	NR	rs945310-T	0.104774	1E-15		0.0404576	[0.031-0.05] unit decrease	NR [19129689] (imputed)	N
1120	chr14	70186439	70186440	rs4902750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.1	KIAA0247	rs4902750-A	0.158635	3E-9		0.018446455	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr14	70192364	70192366	rs150860676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.1	SRSF5	rs150860676-C	0.851793	2E-9		0.019728474	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr14	70194562	70194563	rs1275824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.1	SRSF5	rs1275824-A	0.807549	3E-9		0.016679961	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr14	70194562	70194563	rs1275824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.1		rs1275824-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1120	chr14	70225363	70225364	rs2332166	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.1	SLC10A1	rs2332166-?	NR	3E-6	(pyridoxate)	2.532119	[1.47-3.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1120	chr14	70238312	70238313	rs147871553	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q24.1	NR	rs147871553-T	0.0179953	5E-8		0.14161	[0.089-0.194] unit increase	Affymetrix [17914406] (imputed)	N
1121	chr14	70327333	70327334	rs7156508	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	14q24.2	SLC10A1, SMOC1	rs7156508-T	NR	1E-9		6.079	z-score increase	Illumina [632375]	N
1121	chr14	70328409	70328410	rs55796722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.2	SMOC1	rs55796722-T	0.83253	1E-18		0.0286529	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr14	70328409	70328410	rs55796722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.2	SMOC1	rs55796722-T	0.832524	8E-23		0.029119551	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr14	70328409	70328410	rs55796722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	14q24.2	NR	rs55796722-T	0.83239	8E-10		0.017248	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1121	chr14	70328409	70328410	rs55796722	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q24.2	NR	rs55796722-T	NR	5E-12		0.03938	[0.029-0.05] unit decrease	Affymetrix [16832071] (imputed)	N
1121	chr14	70344722	70344723	rs749396	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.2	SMOC1	rs749396-G	0.92765625	4E-6	(SMOC1, 5694_57_3)	0.2170476	[0.13-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1121	chr14	70345410	70345411	rs2332175	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	14q24.2	SMOC1	rs2332175-A	0.529	2E-11		0.276	[0.2-0.36] unit increase	Illumina [8400000] (imputed)	N
1121	chr14	70345410	70345411	rs2332175	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	14q24.2	SMOC1	rs2332175-A	0.529	3E-22	(EA)	0.36	[0.29-0.43] unit increase	Illumina [8400000] (imputed)	N
1121	chr14	70345410	70345411	rs2332175	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	14q24.2	SMOC1	rs2332175-A	0.526	5E-23		0.346	[0.28-0.41] unit increase	Illumina [8400000] (imputed)	N
1121	chr14	70345410	70345411	rs2332175	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	14q24.2	SMOC1	rs2332175-A	0.529	2E-17		0.315	[0.24-0.39] unit increase	Illumina [8400000] (imputed)	N
1121	chr14	70347347	70347348	rs11158820	23263445	Lawrance-Owen AJ	2012-12-22	Hum Genet	Genetic association suggests that SMOC1 mediates between prenatal sex hormones and digit ratio.	Digit length ratio	979 European ancestry individuals	(see Medland, 2010)	14q24.2	SMOC	rs11158820-?	NR	2E-11				Illumina [642758]	N
1121	chr14	70348141	70348141	rs35230100	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.2	SMOC1	rs35230100-CATAT	0.4328	4E-40		0.0262	[0.022-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1121	chr14	70348141	70348141	rs35230100	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q24.2	NR	rs35230100-CATAT	0.431849	8E-14		0.0534772	[0.04-0.067] unit decrease	Affymetrix [17914406] (imputed)	N
1121	chr14	70348141	70348141	rs35230100	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.2		rs35230100-?	NR	1E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMOC1	5,366 Icelandic ancestry individuals	NA	14q24.2		rs1958078-A	0.1353	4E-22		0.235602	[0.19-0.28] unit decrease	Illumina [7506463] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q24.2		rs1958078-C	NR	6E-18		0.0286	[0.022-0.035] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q24.2		rs1958078-C	NR	1E-22		0.0324	[0.026-0.039] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	14q24.2		rs1958078-A	0.155	3E-13		0.11	[-0.14--0.08] % decrease	Affymetrix [NR] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.2	SMOC1	rs1958078-C	0.843574	2E-20		0.028693182	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs1958078-A	0.165193	2E-26				Affymetrix, Illumina [22063850] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q24.2	NR	rs1958078-A	0.15839	4E-27		0.028252	[0.023-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs1958078-C	0.863438	8E-26				Affymetrix, Illumina [24246363] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q24.2	NR	rs1958078-C	0.842197	2E-28		0.028033	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs1958078-C	0.866744	1E-29				Affymetrix, Illumina [20825802] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q24.2	NR	rs1958078-C	0.843128	1E-32		0.032088	[0.027-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.2		rs1958078-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.2		rs1958078-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.2	SMOC1	rs1958078-C	0.86421875	2E-15	(SMOC1, 13118_5_3)	0.2555848	[0.19-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.2	SMOC1	rs1958078-C	0.834	2E-30	(SPARC-related modular calcium-binding protein 1, SMOC1.13118.5.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q24.2	SMOC1	rs1958078-C	0.8428	3E-15		0.03868551	[0.029-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1121	chr14	70354857	70354858	rs1958078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q24.2	SMOC1	rs1958078-C	0.8428	2E-11		0.03292623	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1121	chr14	70365923	70365924	rs11627546	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q24.2	SMOC1	rs11627546-C	0.84	1E-9	(EA, MCV)	0.162	[0.099-0.225] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1122	chr14	70385706	70385707	rs75987388	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	14q24.2	SMOC1, RPL7AP6, SLC10A1, SLC8A3	rs75987388-T	NR	2E-6	(daytime resting duration, weekdays)	0.2994	[0.18-0.42] unit increase	Affymetrix [7141204] (imputed)	N
1122	chr14	70413045	70413046	rs1547088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.2		rs1547088-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1122	chr14	70418880	70418881	rs3742909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	14q24.2		rs3742909-A	NR	5E-8		0.0664	[0.042-0.09] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
1122	chr14	70426974	70426975	rs77041705	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	14q24.2	NR	rs77041705-G	NR	4E-6		0.2534	[0.15-0.36] SD units decrease	NR [10700000] (imputed)	N
1122	chr14	70439184	70439185	rs7152091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q24.2		rs7152091-A	NR	2E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1122	chr14	70439775	70439776	rs227448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.2		rs227448-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1122	chr14	70439855	70439856	rs227447	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.2	SMOC1	rs227447-C	0.6664	1E-24		0.0192	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1122	chr14	70455522	70455523	rs227427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q24.2		rs227427-A	NR	1E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1122	chr14	70456663	70456664	rs227426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.2		rs227426-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1122	chr14	70456698	70456699	rs227425	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	14q24.2	SMOC1	rs227425-G	0.53	4E-7	(spine, EA)			Affymetrix, Illumina [5842825] (imputed)	N
1122	chr14	70456698	70456699	rs227425	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	14q24.2	SMOC1	rs227425-G	0.53	4E-13	(spine)	2.2	[NR] unit decrease	Affymetrix, Illumina [5842825] (imputed)	N
1122	chr14	70456698	70456699	rs227425	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	14q24.2	SMOC1	rs227425-G	0.53	2E-6	(hip)	1.5	[NR] unit decrease	Affymetrix, Illumina [5842825] (imputed)	N
1122	chr14	70456698	70456699	rs227425	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	14q24.2	SMOC1	rs227425-G	0.48	1E-6	(spine, East Asian)			Affymetrix, Illumina [5842825] (imputed)	N
1122	chr14	70459369	70459370	rs227419	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMOC1	5,366 Icelandic ancestry individuals	NA	14q24.2		rs227419-T	0.415	7E-13		0.12192	[0.089-0.155] unit increase	Illumina [7506463] (imputed)	N
1122	chr14	70459369	70459370	rs227419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q24.2		rs227419-C	NR	3E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1122	chr14	70460553	70460554	rs227417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	14q24.2		rs227417-C	NR	4E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1122	chr14	70462360	70462361	rs12433177	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	SLC8A3	rs12433177-?	NR	6E-6	(fructose; glucose; galactose)	0.17460604	[0.099-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1122	chr14	70467289	70467290	rs56031625	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q24.2	SMOC1	rs56031625-C	0.805223	9E-10		0.0143989	[0.0098-0.019] unit increase	NR [13737936] (imputed)	N
1122	chr14	70467289	70467290	rs56031625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q24.2		rs56031625-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1122	chr14	70467946	70467947	rs7141378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q24.2		rs7141378-A	NR	2E-22		0.0127	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1122	chr14	70472811	70472812	rs7160726	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.2	NR	rs7160726-G	0.443	3E-16	(SPARC-related modular calcium-binding protein 1, SMOC1.13118.5.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1122	chr14	70474206	70474207	rs8012912	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	14q24.2	SMOC1	rs8012912-?		7E-6	(endpoint 5, East Asian, additive)	1.62	[NR]	Illumina [> 750000]	N
1122	chr14	70479173	70479174	rs11158827	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	14q24.2	Intergenic	rs11158827-?		8E-6	(endpoint 5, East Asian, additive)	1.62	[NR]	Illumina [> 750000]	N
1122	chr14	70487395	70487396	rs11626232	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	14q24.2		rs11626232-C	0.935068	5E-6		0.0162333	[0.0061-0.0264] unit decrease	Illumina [7666802] (imputed)	N
1122	chr14	70491382	70491383	rs227404	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.2	NR	rs227404-G	0.01045	1E-11	(ORM2)	0.2076	NR unit increase	Illumina [1671387] (imputed)	N
1122	chr14	70491452	70491453	rs7159934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	SLC8A3	rs7159934-?	NR	6E-7	(taurocholate)	0.26817906	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1122	chr14	70501363	70501364	rs55784307	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	14q24.2		rs55784307-A	0.19	1E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1122	chr14	70501363	70501364	rs55784307	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	14q24.2	SMOC1	rs55784307-A	0.1817	3E-8		1.06	[1.04-1.09]	Affymetrix [at least 20323458] (imputed)	N
1122	chr14	70502049	70502050	rs17175227	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	14q24.2	SMOC1	rs17175227-G	0.98	9E-9		7.1429	[NR]	Affymetrix [up to 4467279] (imputed)	N
1123	chr14	70517182	70517183	rs12883884	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	14q24.2	SLC8A3	rs12883884-T	0.61	8E-6				Illumina [~ 2609000] (imputed)	N
1123	chr14	70585268	70585269	rs10136228	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q24.2	SLC8A3	rs10136228-G	0.45999999999999996	2E-6		1.0539074		NR [9372253] (imputed)	N
1123	chr14	70591660	70591661	rs4902780	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	14q24.2	NA	rs4902780-C	0.5795	5E-6		0.3342	[0.2077-0.5379]	Illumina [243345]	N
1123	chr14	70619490	70619491	rs77086208	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	14q24.2	NR	rs77086208-C	NR	4E-6		0.3226	[0.19-0.46] SD units decrease	NR [10700000] (imputed)	N
1123	chr14	70620641	70620642	rs4899329	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q24.2	NR	rs4899329-C	0.399541382287494	5E-6	(IGP67)	0.142	[0.081-0.203] unit increase	Illumina [~ 2500000] (imputed)	N
1123	chr14	70633410	70633411	rs41286548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.2		rs41286548-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1123	chr14	70644168	70644169	rs7146198	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	14q24.2	SLC8A3	rs7146198-A	NR	4E-6		0.048	[0.028-0.068] mm increase	Illumina [1704858] (imputed)	N
1124	chr14	70679801	70679802	rs4899339	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.2	NR	rs4899339-?	NR	4E-12				Affymetrix [NR]	N
1124	chr14	70692454	70692455	rs58204263	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	14q24.2	NR	rs58204263-?	NR	9E-6		0.4574	[0.27-0.65] unit decrease	Illumina [at least 560000] (imputed)	N
1124	chr14	70706583	70706584	rs6650511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	14q24.2		rs6650511-G	0.659141	1E-8		0.0235836	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1124	chr14	70756332	70756333	rs17565772	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	14q24.2	NR	rs17565772-G	NR	6E-10		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1124	chr14	70770866	70770867	rs8005362	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q24.2	NR	rs8005362-A	0.527696	2E-25		0.0201149	[0.016-0.024] unit decrease	Affymetrix [15000001]	N
1125	chr14	70798288	70798289	rs8016418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q24.2		rs8016418-A	NR	3E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1125	chr14	70798288	70798289	rs8016418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q24.2	NR	rs8016418-A	NR	4E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1125	chr14	70810568	70810569	rs34767236	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	14q24.2	COX16	rs34767236-G	0.625479	3E-20		0.0198565	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1125	chr14	70813310	70813311	rs12588332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	14q24.2		rs12588332-C	NR	1E-9		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1125	chr14	70817140	70817141	rs11620731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.2	NR	rs11620731-T	NR	7E-9		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1125	chr14	70817140	70817141	rs11620731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.2	NR	rs11620731-T	0.147	2E-7	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1125	chr14	70817140	70817141	rs11620731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.2	NR	rs11620731-T	NR	1E-11		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1125	chr14	70817140	70817141	rs11620731	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.2	NR	rs11620731-T	0.147	4E-10	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1125	chr14	70847123	70847124	rs8022288	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q24.2	SYNJ2BP	rs8022288-T	0.8636	3E-11		0.0259	[0.018-0.034] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1125	chr14	70850011	70850012	rs2877660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q24.2	NR	rs2877660-G	NR	4E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr14	70850011	70850012	rs2877660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	14q24.2	NR	rs2877660-G	NR	8E-15		0.0268	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr14	70850011	70850012	rs2877660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	14q24.2	NR	rs2877660-G	NR	1E-19		0.0313	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1125	chr14	70851492	70851493	rs139448810	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q24.2	SYNJ2BP	rs139448810-C	NR	9E-6	(G_Faecalitalea_HB)	1.25651	[0.7-1.81] unit increase	Illumina [7711310] (imputed)	N
1125	chr14	70881488	70881489	rs10143078	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	14q24.2	SYNJ2BP	rs10143078-C	0.04	6E-7	(EA, SBP, Age 20-29)	4.06	[2.47-5.65] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1125	chr14	70890139	70890140	rs12586722	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma estrone levels in resected estrogen-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	14q24.2	ADAM21, LOC105370555, C14orf55	rs12586722-A	0.155	1E-6		0.3	[0.18-0.42] pg/mL increase	Illumina [8203257] (imputed)	N
1125	chr14	70890187	70890188	rs8008210	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	14q24.2	ADAM21, SYNJ2BP, ADAM20	rs8008210-G	NR	2E-6		1.115	[0.66-1.57] unit decrease	Illumina [4774020] (imputed)	N
1126	chr14	70919698	70919699	rs8014252	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma estrone levels in resected estrogen-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	14q24.2	PLEKHD1	rs8014252-G	0.1556	2E-6		0.2981	[0.18-0.42] pg/mL increase	Illumina [8203257] (imputed)	N
1126	chr14	70924248	70924249	rs3751521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	14q24.2		rs3751521-A	0.561204	3E-9		0.0247247	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1126	chr14	70924248	70924249	rs3751521	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	14q24.2		rs3751521-A	0.561204	1E-8		0.0237423	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1126	chr14	71011468	71011469	rs6573971	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	14q24.2	ADAM20	rs6573971-G	0.444622	3E-10		0.0133161	[0.0092-0.0175] unit increase	Affymetrix [NR] (imputed)	N
1127	chr14	71092255	71092256	rs8014671	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	14q24.2	NR	rs8014671-G	0.58	2E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1127	chr14	71092255	71092256	rs8014671	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	14q24.2	TTC9	rs8014671-G	0.59	3E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1127	chr14	71092255	71092256	rs8014671	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	14q24.2	TTC9	rs8014671-G	0.59	1E-8	(EA)	1.07	[1.05-1.10]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1127	chr14	71096343	71096344	rs9646133	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q24.2	TTC9	rs9646133-T	NR	5E-22		0.020087123	[0.016-0.024] unit increase	Illumina [242289]	N
1127	chr14	71096343	71096344	rs9646133	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	14q24.2	NR	rs9646133-T	0.3	1E-8		0.019	unit decrease	Illumina [242289]	N
1127	chr14	71104080	71104081	rs4902833	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	14q24.2	TTC9	rs4902833-G	0.0611107	1E-7		0.593	[0.489 - 0.721]	Illumina [5397657] (imputed)	N
1127	chr14	71120333	71120334	rs11629413	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TTC9	rs11629413-?	NR	8E-11	(female)	0.267219	[NR] unit increase	Affymetrix [NR] (imputed)	N
1127	chr14	71134942	71134943	rs148532338	34560606	Park S	2021-09-09	Clin Nutr	Association between polygenetic risk scores related to sarcopenia risk and their interactions with regular exercise in a large cohort of Korean adults.	sarcopenia	1,368 Korean ancestry cases, 15,742 Korean ancestry controls	NA	14q24.2		rs148532338-?	NR	6E-6		1.96	[1.47-2.63]	Affymetrix [NR]	N
1128	chr14	71249801	71249802	rs17108533	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	14q24.2	MAP3K9	rs17108533-?	0.10	1E-6	(quetiapine)			Affymetrix [492900]	N
1128	chr14	71268445	71268446	rs7151024	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	14q24.2	MAP3K9	rs7151024-?		6E-10				Illumina [9499600] (imputed)	N
1129	chr14	71352647	71352648	rs36563	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	14q24.2	intergenic	rs36563-A	0.15	5E-6		1.33	[1.18-1.50]	Illumina [524396]	N
1129	chr14	71359063	71359064	rs2526886	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q24.2	NR	rs2526886-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1129	chr14	71359063	71359064	rs2526886	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q24.2	NA	rs2526886-T	0.69	4E-9		0.0125	[0.0084-0.0166] unit increase	NR [~ 27400000] (imputed)	N
1129	chr14	71361413	71361414	rs989501	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q24.2	PCNX	rs989501-?	NR	1E-11		0.0138115985	[0.0098-0.0178] unit increase	NR [7306098]	N
1129	chr14	71361413	71361414	rs989501	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	14q24.2	PCNX	rs989501-G	0.351584	2E-8		0.035428744	[0.023-0.048] unit decrease	Affymetrix [7288503] (imputed)	N
1129	chr14	71374701	71374702	rs2526882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q24.2		rs2526882-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1129	chr14	71374701	71374702	rs2526882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q24.2		rs2526882-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1129	chr14	71374701	71374702	rs2526882	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q24.2	PCNX	rs2526882-G	NR	2E-7		1.0537407	[1.03-1.07]	Illumina [6627481] (imputed)	N
1129	chr14	71374701	71374702	rs2526882	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q24.2	intergenic	rs2526882-G	NR	1E-6		1.048218	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1129	chr14	71388397	71388398	rs2189806	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q24.2	NR	rs2189806-?	NR	5E-10		1.0609854	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1129	chr14	71391024	71391025	rs2810117	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2810117-?	NR	1E-8				NR [2625067]	N
1129	chr14	71391024	71391025	rs2810117	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs2810117-T	0.3579	3E-8		0.06384712	[0.041-0.086] unit increase	NR [NR]	N
1129	chr14	71395603	71395604	rs2810114	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	14q24.2	NR	rs2810114-?	NR	4E-6		1.29	[1.16-1.44]	Illumina [463044]	N
1129	chr14	71404246	71404246	rs143046984	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	14q24.2	NR	rs143046984-TA	0.04	4E-7		1.65	[1.36-2.01]	Illumina [9875636] (imputed)	N
1130	chr14	71456981	71456982	rs7154284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.2		rs7154284-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1130	chr14	71472225	71472226	rs67981189	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q24.2	PCNX	rs67981189-G	NR	4E-9	(EA)	1.072	[1.05-1.1]	Illumina [6627481] (imputed)	N
1130	chr14	71472225	71472226	rs67981189	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q24.2	NR	rs67981189-G	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1130	chr14	71507600	71507601	rs11848070	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	14q24.2	PCNX	rs11848070-C	0.25	6E-6				Affymetrix [614963]	N
1130	chr14	71514162	71514163	rs2286313	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	14q24.2	NR	rs2286313-G	0.04	4E-7		1.66	[1.36-2.02]	Illumina [9875636] (imputed)	N
1130	chr14	71535492	71535493	rs34542576	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	14q24.2	NR	rs34542576-?		2E-8				NR [8377093]	N
1130	chr14	71535492	71535493	rs34542576	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	14q24.2	NR	rs34542576-?		2E-8				NR [8377093]	N
1130	chr14	71541025	71541026	rs2240533	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q24.2	PCNX	rs2240533-T	0.690101	3E-9		0.0128299	[0.0086-0.0171] unit increase	Affymetrix [NR] (imputed)	N
1131	chr14	71596346	71596347	rs221907	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	14q24.2	RP1-292L20.1	rs221907-A	0.360751	1E-8		0.03336187	[0.022-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
1131	chr14	71596346	71596347	rs221907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	14q24.2		rs221907-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1131	chr14	71601078	71601079	rs221902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q24.2	PCNX	rs221902-?		4E-8		1.0526316	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1131	chr14	71624366	71624367	rs77846086	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	14q24.2		rs77846086-C	0.02468	6E-6		2.355	[1.624-3.41399999999999]	Affymetrix [7975321] (imputed)	N
1131	chr14	71647572	71647573	rs7144329	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q24.2	RP6-91H8.2	rs7144329-G	0.4236	3E-9		0.012105165	[0.0081-0.0161] unit increase	Affymetrix [up to 18485882] (imputed)	N
1131	chr14	71648071	71648072	rs917063	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	14q24.2	NR	rs917063-G		8E-6				NR [525577]	N
1131	chr14	71648071	71648072	rs917063	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	14q24.2	intergenic	rs917063-?	NR	1E-6	(Additive model)	0.34	unit decrease	Illumina [542562]	N
1131	chr14	71659608	71659609	rs11621135	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	14q24.2	LOC145474, PCNX, SNORD56B	rs11621135-?	NR	6E-6				Illumina [9143600] (imputed)	N
1131	chr14	71666296	71666297	rs17767225	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	14q24.2	intergenic	rs17767225-T	0.2	8E-6				Affymetrix [614963]	N
1131	chr14	71673151	71673152	rs56193103	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	14q24.2	PCNX	rs56193103-T	0.35	2E-6	(Right HG area)	5.52	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1132	chr14	71715862	71715863	rs1987778	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q24.2	NR	rs1987778-T	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1132	chr14	71728328	71728329	rs72726701	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	14q24.2	SIPA1L1, LOC145474	rs72726701-?	NR	5E-7				Affymetrix, Illumina [22000000] (imputed)	N
1132	chr14	71764776	71764777	rs17767392	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	14q24.2	PCNX, SIPA1L1	rs17767392-T	0.25	2E-8		1.23	[1.15-1.32]	Affymetrix, Illumina [~ 4800000] (imputed)	N
1132	chr14	71770484	71770485	rs17767398	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	14q24.2	SNORD56B, SIPA1L1	rs17767398-G	0.26	6E-13		1.0	[0.75-1.25] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1132	chr14	71799174	71799175	rs2108706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	SIPA1L1	rs2108706-T	0.743477	4E-11	(-26 ms)	0.0413283	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1132	chr14	71799174	71799175	rs2108706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	SIPA1L1	rs2108706-T	0.743477	3E-13	(-28 ms)	0.0459245	[0.033-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1132	chr14	71799174	71799175	rs2108706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	SIPA1L1	rs2108706-T	0.743477	2E-13	(-32 ms)	0.0459362	[0.033-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1132	chr14	71799174	71799175	rs2108706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	SIPA1L1	rs2108706-T	0.743477	1E-8	(-24 ms)	0.0356893	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1132	chr14	71799174	71799175	rs2108706	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	SIPA1L1	rs2108706-T	0.743477	1E-13	(-30 ms)	0.0473644	[0.035-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1132	chr14	71826546	71826547	rs75930676	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	14q24.2	SIPA1L1	rs75930676-?	0.05	2E-9		1.0752687		Affymetrix [11800000] (imputed)	N
1133	chr14	71834209	71834210	rs8019721	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	14q24.2	AC004817.1	rs8019721-A	0.261	1E-8		1.192	[0.78-1.6] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1133	chr14	71884566	71884567	rs12880291	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	14q24.2	SIPA1L1	rs12880291-?	NR	4E-14	(EA)	0.49	[0.37-0.61] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1133	chr14	71921575	71921576	rs34991781	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	14q24.2	SIPA1L1	rs34991781-A	0.264	2E-16		0.81	[0.62-1] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1133	chr14	71956269	71956270	rs12127	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	14q24.2	SIPA1L1	rs12127-T	0.74	2E-10	(European)	0.49	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1133	chr14	71956269	71956270	rs12127	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	14q24.2	SIPA1L1	rs12127-T		6E-13		0.5	[0.36-0.64] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1134	chr14	71983637	71983638	rs61989382	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q24.2	SNORD56B	rs61989382-C	0.2459	1E-31		0.8629	[0.72-1.01] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1134	chr14	71987064	71987065	rs11158907	24277619	Quillen EE	2013-11-26	Am J Med Genet B Neuropsychiatr Genet	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Response to alcohol consumption (flushing response)	108 Han Chinese ancestry cases, 190 Han Chinese ancestry controls	NA	14q24.2	intergenic	rs11158907-?		2E-6		0.556	unit increase	Illumina [247725]	N
1134	chr14	71990847	71990847	rs71105784	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		14q24.2	NR	rs71105784-CCTGT	0.24761	9E-7		0.059724	[0.036-0.084] unit decrease	Affymetrix [14134301] (imputed)	N
1134	chr14	71990847	71990847	rs71105784	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		14q24.2	NR	rs71105784-CCTGT	0.24761	3E-7		0.062569	[0.039-0.086] unit decrease	Affymetrix [14134301] (imputed)	N
1134	chr14	71990847	71990847	rs71105784	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		14q24.2	NR	rs71105784-CCTGT	0.24761	5E-6		0.055628	[0.032-0.079] unit decrease	Affymetrix [14134301] (imputed)	N
1134	chr14	71990847	71990847	rs71105784	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		14q24.2	NR	rs71105784-CCTGT	0.24761	2E-9		0.073386	[0.05-0.097] unit decrease	Affymetrix [14134301] (imputed)	N
1134	chr14	71990847	71990847	rs71105784	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		14q24.2	NR	rs71105784-CCTGT	0.24761	5E-8		0.066337	[0.043-0.09] unit decrease	Affymetrix [14134301] (imputed)	N
1134	chr14	72010664	72010665	rs28852403	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.2	intergenic	rs28852403-T	0.86593	1E-7		5.294	z score increase	Illumina [18485882] (imputed)	N
1134	chr14	72016788	72016789	rs117911949	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q24.2	SIPA1L1	rs117911949-A	0.999	4E-6	(AA)	0.42	unit increase	Illumina [NR] (imputed)	N
1134	chr14	72057354	72057355	rs11848785	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	14q24.2	SIPA1L1	rs11848785-G	0.239708	1E-30		0.436945	[0.36-0.51] ms decrease	Illumina [162199]	N
1134	chr14	72057354	72057355	rs11848785	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	14q24.2	SIPA1L1	rs11848785-G	0.252710661819518	2E-18		0.45414805	[0.35-0.56] ms decrease	Illumina [213295]	N
1134	chr14	72057354	72057355	rs11848785	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	14q24.2	NR	rs11848785-?	NR	6E-14	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1135	chr14	72101764	72101765	rs9972151	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.2	NR	rs9972151-T	NR	3E-8		5.538	z score decrease	Affymetrix [10847151] (imputed)	N
1135	chr14	72114137	72114138	rs3784060	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	14q24.2	SIPA1L1	rs3784060-G	NR	2E-8		0.01315	unit increase	Affymetrix [9327396] (imputed)	N
1135	chr14	72170968	72170969	rs4140799	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	14q24.2	NR	rs4140799-G	0.47	4E-11		0.01268	[0.0089-0.0164] unit increase	NR [8968716] (imputed)	N
1135	chr14	72170968	72170969	rs4140799	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.2	SIPA1L1	rs4140799-G	NR	1E-8		0.0099509	[0.0065-0.0134] unit decrease	Affymetrix [18485882] (imputed)	N
1135	chr14	72170968	72170969	rs4140799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q24.2		rs4140799-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1135	chr14	72170968	72170969	rs4140799	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.2	SIPA1L1	rs4140799-A	0.54415	1E-7		5.311	z score decrease	Illumina [18485882] (imputed)	N
1135	chr14	72194400	72194401	rs17100926	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.2	SIPA1L1	rs17100926-A	0.049	1E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
1135	chr14	72213257	72213258	rs6574018	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	14q24.2	SIPA1L1	rs6574018-T	0.3623	2E-8		0.0556	[0.036-0.075] unit increase	NR [9744772] (imputed)	N
1136	chr14	72284547	72284548	rs112850127	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.2	RGS6	rs112850127-A	0.959687	1E-6		4.83	z score increase	Illumina [18485882] (imputed)	N
1136	chr14	72335217	72335218	rs6574032	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	14q24.2	RGS6, SIPA1L1	rs6574032-?	NR	1E-10				Affymetrix [753382]	N
1137	chr14	72353201	72353202	rs36423	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6, SIPA1L1	rs36423-T	0.129193	2E-14		0.032977	[0.024-0.042] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72353201	72353202	rs36423	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6	rs36423-T	0.129193	6E-13	(EA)	0.032977	[0.024-0.042] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72353201	72353202	rs36423	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	RGS6, SIPA1L1	rs36423-T	0.127977	5E-11	(EA)	0.040464	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72353201	72353202	rs36423	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	RGS6, SIPA1L1	rs36423-T	0.127977	1E-11		0.040464	[0.028-0.053] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72357936	72357937	rs36405	25533513	Yao SL	2014-12-22	Chin J Integr Med	Genome-wide association study on susceptibility genes associated with yang-deficiency constitution: A small sample case-control study.	Yang-deficiency constitution	30 cases, 30 balanced constitution controls	NA	14q24.2	RGS6	rs36405-?	NR	4E-7				Affymetrix [668548]	N
1137	chr14	72365766	72365767	rs17178946	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,420 European ancestry individuals	NA	14q24.2		rs17178946-G	0.1	4E-7		0.74	[0.45-1.03] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
1137	chr14	72387639	72387640	rs36350	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q24.2	RGS6	rs36350-?		3E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [NR]	N
1137	chr14	72408637	72408638	rs35607894	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q24.2	RGS6	rs35607894-A	NR	6E-10		1.09	[1.06-1.12]	Illumina [6627481] (imputed)	N
1137	chr14	72408637	72408638	rs35607894	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q24.2	RGS6	rs35607894-A	NR	5E-11		1.094	[1.07-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1137	chr14	72416218	72416219	rs2190864	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q24.2	NR	rs2190864-?	NR	1E-12		1.06556	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	14q24.2	NR	rs2332700-?		4E-8				NR [8377093]	N
1137	chr14	72417325	72417326	rs2332700	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q24.2	RGS6	rs2332700-?		5E-10				NR [6786993] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	14q24.2	NR	rs2332700-?	NR	1E-9				Illumina [up to 5582932] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q24.2	RGS6	rs2332700-C	NR	7E-10	(EA)	1.0799136	[1.06-1.1]	Illumina [6627481] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	14q24.2	RGS6	rs2332700-?	NR	2E-10		1.073	[1.05-1.09]	Illumina [8000000] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q24.2	RGS6	rs2332700-C		2E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1137	chr14	72417325	72417326	rs2332700	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q24.2	NR	rs2332700-C	NR	1E-9		1.08	[NR]	Illumina [7158791] (imputed)	N
1137	chr14	72417325	72417326	rs2332700	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	14q24.2	AC005477.1, RGS6	rs2332700-C	0.249	5E-9		1.073	[1.048-1.098]	Affymetrix, Illumina [9005918] (imputed)	N
1137	chr14	72425521	72425522	rs2238280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q24.2		rs2238280-C	NR	5E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1137	chr14	72425521	72425522	rs2238280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.2		rs2238280-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1137	chr14	72429063	72429064	rs2190872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q24.2		rs2190872-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1137	chr14	72432148	72432149	rs4902960	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	14q24.2	RGS6	rs4902960-G	NR	1E-6		0.193	[0.11-0.27] unit increase	Illumina [628922]	N
1137	chr14	72434001	72434002	rs7143919	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7143919-?	NR	5E-9				NR [2625067]	N
1137	chr14	72434001	72434002	rs7143919	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7143919-A	0.3439	1E-8		0.0655338	[0.043-0.088] unit increase	NR [NR]	N
1137	chr14	72434001	72434002	rs7143919	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs7143919-?		9E-10				NR [8377093]	N
1137	chr14	72435704	72435705	rs12888615	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.2	Intergenic	rs12888615-T	0.1939	2E-13	(MTAG)	0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr14	72435704	72435705	rs12888615	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.2		rs12888615-T	0.1991	9E-12		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr14	72437276	72437277	rs4902961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q24.2	Intergenic	rs4902961-A	0.2442	1E-10	(MTAG)	0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr14	72437276	72437277	rs4902961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q24.2	Intergenic	rs4902961-G	0.7558	3E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr14	72437723	72437724	rs34328930	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q24.2	RGS6	rs34328930-?	NR	5E-11		0.017342182	[0.012-0.023] unit decrease	NR [7306098]	N
1137	chr14	72442611	72442612	rs7161596	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	14q24.2	NR	rs7161596-?		1E-8				NR [520857]	N
1137	chr14	72449590	72449591	rs12897542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.2		rs12897542-A	0.7988	3E-12	(conditional-joint)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr14	72449590	72449591	rs12897542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.2	Intergenic	rs12897542-A	0.7988	2E-13	(MTAG)	0.012	[0.0089-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr14	72462380	72462381	rs11623535	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q24.2	RGS6	rs11623535-A	0.7426	3E-13		0.2022	[0.15-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1137	chr14	72464261	72464262	rs4899412	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6	rs4899412-T	0.252324	6E-13		0.025882	[0.019-0.033] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72464261	72464262	rs4899412	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6	rs4899412-T	0.252324	3E-13	(EA)	0.025882	[0.019-0.033] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1137	chr14	72466284	72466285	rs1009017	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q24.2	RGS6	rs1009017-T	0.2515	9E-12		0.2055	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1138	chr14	72484155	72484156	rs36032616	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q24.2	RGS6, Y_RNA	rs36032616-G	NR	1E-6	(sleep onset irregularity)	0.1202	[0.072-0.168] unit decrease	Affymetrix [7141204] (imputed)	N
1138	chr14	72487052	72487053	rs2052015	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	RGSA	rs2052015-T	0.165091	4E-10	(EA)	0.036107	[0.025-0.047] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1138	chr14	72487052	72487053	rs2052015	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	RGS6	rs2052015-T	0.165091	4E-10	(EA)	0.036107	[0.025-0.047] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1138	chr14	72487052	72487053	rs2052015	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	RGS6	rs2052015-T	0.165091	2E-9		0.036107	[0.025-0.047] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1138	chr14	72586559	72586560	rs981975	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	14q24.2	RGS6	rs981975-T	NR	9E-7	(CPZe)	0.1941	[NR] unit decrease	Illumina [1190033]	N
1139	chr14	72618287	72618288	rs72719851	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RGS6	rs72719851-?	NR	8E-9	(male)	1.18225	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1139	chr14	72654252	72654253	rs149640	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	14q24.2	NR	rs149640-?	NR	1E-6				Illumina [1735619]	N
1139	chr14	72673096	72673097	rs847297	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	14q24.2		rs847297-G	NR	5E-6		0.83199	[0.48-1.18] unit increase	Illumina [NR] (imputed)	N
1139	chr14	72692492	72692493	rs699363	21935397	Paternoster L	2011-09-15	PLoS One	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adult cases, 2,740 European ancestry controls	29,181 European ancestry individuals	14q24.2	RGS6	rs699363-G	NR	5E-6				Illumina [545349]	N
1139	chr14	72694873	72694874	rs67327215	32884031	Chuang GT	2020-09-03	Sci Rep	Genome-wide association study for circulating fibroblast growth factor 21 and 23.	Circulating fibroblast growth factor 21 levels	4,201 Taiwanese ancestry individuals	NA	14q24.2		rs67327215-G	0.62	7E-7		0.046	[0.028-0.064] unit increase	Affymetrix [7897704] (imputed)	N
1139	chr14	72716514	72716515	rs12895275	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	14q24.2	RGS6	rs12895275-G	0.0393	4E-7		1.51	NR	Illumina [11532644] (imputed)	N
1139	chr14	72716685	72716686	rs847245	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	14q24.2	RGS6	rs847245-G	0.04109971	2E-6		1.5125053	[1.274042132-1.795601601]	Illumina [10439017] (imputed)	N
1140	chr14	72799002	72799003	rs2238199	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q24.2	RGS6	rs2238199-A	0.449	4E-9		0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1140	chr14	72799002	72799003	rs2238199	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	14q24.2	DPF3	rs2238199-A	0.4453	3E-10		0.012294073	[0.0085-0.0161] unit increase	Illumina [9339358] (imputed)	N
1140	chr14	72812524	72812525	rs2681735	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	14q24.2	NR	rs2681735-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1140	chr14	72813268	72813269	rs2529471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6	rs2529471-C	0.428286	2E-12	(EA)	0.02116	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1140	chr14	72813268	72813269	rs2529471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	14q24.2	RGS6	rs2529471-C	0.428286	2E-12		0.02116	[0.015-0.027] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1140	chr14	72813268	72813269	rs2529471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	14q24.2	intergenic	rs2529471-C	0.424941	3E-11	(EA)	0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1140	chr14	72834180	72834181	rs7158564	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q24.2	RGS6	rs7158564-?		8E-6				Illumina [4322238] (imputed)	N
1140	chr14	72844764	72844765	rs150330648	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	14q24.2	RGS6	rs150330648-G	0.987	4E-8		1.395	[0.9-1.89] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1141	chr14	72883873	72883874	rs7159300	20811658	Uhl GR	2010-08-24	Mol Med	Genome-wide association for smoking cessation success in a trial of precessation nicotine replacement.	Smoking cessation	369 European ancestry individuals	NA	14q24.2	RGS6	rs7159300-?	NR	4E-6				Affymetrix [905273]	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	9E-10	(322 ms)	0.0488021	[0.033-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	9E-10	(300 ms)	0.0495567	[0.034-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	9E-10	(294 ms)	0.0493844	[0.034-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	7E-11	(316 ms)	0.0525179	[0.037-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	5E-11	(312 ms)	0.0532488	[0.037-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	5E-10	(310 ms)	0.0505589	[0.035-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	5E-10	(296 ms)	0.0502037	[0.034-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-9	(292 ms)	0.0474988	[0.032-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-8	(342 ms)	0.0434715	[0.028-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-8	(288 ms)	0.0439331	[0.028-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-10	(328 ms)	0.0496733	[0.034-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-10	(306 ms)	0.050774	[0.035-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	4E-10	(298 ms)	0.0498715	[0.034-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	3E-8	(340 ms)	0.0442951	[0.029-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	3E-10	(326 ms)	0.0501329	[0.034-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	3E-10	(324 ms)	0.050019	[0.034-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	3E-10	(302 ms)	0.0510049	[0.035-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-9	(334 ms)	0.0473087	[0.032-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-9	(330 ms)	0.0476427	[0.032-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-9	(320 ms)	0.0477846	[0.032-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-9	(318 ms)	0.0481781	[0.032-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-9	(308 ms)	0.0490541	[0.033-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-8	(336 ms)	0.0447755	[0.029-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-8	(290 ms)	0.0455517	[0.03-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	2E-11	(314 ms)	0.0546963	[0.039-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	1E-9	(332 ms)	0.0478092	[0.032-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.859644	1E-10	(304 ms)	0.0517886	[0.036-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	14q24.2	RGS6	rs17180489-G	0.853031	2E-12		0.633687	[0.46-0.81] unit increase	Affymetrix [~ 7800000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	14q24.2	RGS6	rs17180489-?	NR	1E-6				Affymetrix [~ 7800000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	14q24.2	RGS6	rs17180489-G	0.85316	3E-6		0.401918	[0.23-0.57] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	14q24.2	RGS6	rs17180489-G	0.859798	1E-10		0.0537005	[0.037-0.07] unit decrease	Affymetrix [509255] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	14q24.2	RGS6	rs17180489-G	0.859838	2E-10		0.0533515	[0.037-0.07] unit decrease	Affymetrix [509255] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	14q24.2	RGS6	rs17180489-G	0.859798	3E-9		0.0496037	[0.033-0.066] unit decrease	Affymetrix [509255] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	14q24.2	RGS6	rs17180489-G	0.859766	3E-11		0.0553598	[0.039-0.072] unit decrease	Affymetrix [509255] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate	13,184 Hispanic/Latino individuals	7,073 European ancestry individuals, 4,771 African American individuals	14q24.2	RGS6	rs17180489-G	0.90	7E-7	(Hispanic)	1.2	[0.73-1.67] beats/min increase	Affymetrix, Illumina [16967914] (imputed)	N
1141	chr14	72885470	72885471	rs17180489	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q24.2	RGS6	rs17180489-C	0.14	9E-19		0.4896	[0.38-0.6] unit decrease	Affymetrix [19941912] (imputed)	N
1141	chr14	72902204	72902205	rs117272176	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	14q24.2	RGS6	rs117272176-?		3E-6	(French Canadians)	3.3881192		Illumina [7614484] (imputed)	N
1141	chr14	72903145	72903145	rs747044242	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	14q24.2		rs747044242-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1141	chr14	72925170	72925171	rs2238186	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	14q24.2	RGS6	rs2238186-G	NR	3E-6	(women)	0.209	[0.12-0.3] unit decrease	Illumina [5527232] (imputed)	N
1141	chr14	72925170	72925171	rs2238186	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	14q24.2	RGS6	rs2238186-?	NR	2E-6	(women)	0.02	[0.012-0.028] unit increase	Illumina [5527232] (imputed)	N
1141	chr14	72939494	72939495	rs10131300	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	14q24.2	RGS6	rs10131300-?		5E-6				Illumina [859311]	N
1141	chr14	72988566	72988567	rs34473506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q24.2	NR	rs34473506-T	NR	9E-11		0.0213	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1141	chr14	72988566	72988567	rs34473506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	14q24.2	NR	rs34473506-T	NR	3E-16		0.0268	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q24.2		rs2239222-G	NR	4E-26		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	14q24.2		rs2239222-G	NR	4E-41		0.0301	[0.026-0.034] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q24.2		rs2239222-G	NR	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q24.2	RGS6	rs2239222-A	0.65018	1E-39		0.00308358	[0.0026-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q24.2	RGS6	rs2239222-A	0.65	1E-24		10.2	z-score increase	Affymetrix [4311822] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q24.2	RGS6	rs2239222-A	0.65	2E-8		5.63	z-score increase	Affymetrix [4314223] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	14q24.2	RGS6	rs2239222-?		1E-9		0.0274	[0.019-0.036] unit increase	Illumina [31500000] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q24.2	NR	rs2239222-G	0.349182	2E-10		0.0206562	[0.014-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q24.2	NR	rs2239222-G	0.349476	9E-35		0.0105435	[0.0088-0.0123] unit increase	Affymetrix [16582909] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q24.2	NR	rs2239222-G	0.34933400000000003	2E-16		0.00998727	[0.0074-0.0125] unit increase	Affymetrix [16585854] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q24.2	NR	rs2239222-G	0.34961	9E-20		0.0115094	[0.0091-0.0139] unit increase	Affymetrix [16582621] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q24.2	NR	rs2239222-G	0.349476	8E-23		0.0097625	[0.0078-0.0117] unit increase	Affymetrix [16582965] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q24.2	NR	rs2239222-G	0.34933400000000003	6E-10		0.0088465	[0.0059-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q24.2	NR	rs2239222-G	0.34961	6E-17		0.0110595	[0.0085-0.0136] unit increase	Affymetrix [16582614] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q24.2	NR	rs2239222-A	0.651525	3E-57		0.0333438	[0.029-0.037] unit decrease	NR [NR]	N
1142	chr14	73011884	73011885	rs2239222	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	14q24.2	RGS6	rs2239222-G	0.36	1E-19		0.035	[0.027-0.043] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1142	chr14	73011884	73011885	rs2239222	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	14q24.2	RGS6	rs2239222-A	0.64	3E-18	(BMI-adjusted)	0.036	[0.028-0.044] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1142	chr14	73019235	73019236	rs4903031	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	14q24.2	RGS6	rs4903031-G	NR	5E-6		0.032	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1142	chr14	73049093	73049094	rs8011442	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	DPF3	rs8011442-?	NR	2E-6	(lysine)	1.9800227	[1.17-2.79] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1142	chr14	73081067	73081068	rs2526932	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	14q24.2	intergenic	rs2526932-G	0.012	6E-13	(CRP)	0.275	[NR] mg/dl increase	Affymetrix [1701735] (imputed)	N
1142	chr14	73107770	73107771	rs2526919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.2	DPF3	rs2526919-A	0.4704	6E-12		0.0131	[0.0094-0.0168] unit decrease	Affymetrix [18391927] (imputed)	N
1142	chr14	73132189	73132190	rs10140566	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q24.2	DPF3	rs10140566-T	0.5885	2E-8		0.077	[0.049-0.105] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1142	chr14	73137233	73137234	rs28667150	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	14q24.2	DPF3	rs28667150-?	NA	5E-11		1.64	[1.15-2.13] unit decrease	Affymetrix [5541230] (imputed)	N
1142	chr14	73137255	73137255	rs759509948	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs759509948-AT	0.639923	1E-14		0.0741115	[0.055-0.093] decrease	Affymetrix [11014269] (imputed)	N
1143	chr14	73138188	73138189	rs1060570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q24.2	NR	rs1060570-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1143	chr14	73139737	73139738	rs7160830	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.2	NR	rs7160830-?	NR	1E-6				Affymetrix [NR]	N
1143	chr14	73184099	73184100	rs10149272	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	14q24.2	NR	rs10149272-C	0.26	1E-10		0.0136	[0.0094-0.0178] unit decrease	NR [NR]	N
1143	chr14	73189152	73189153	rs4415952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q24.2		rs4415952-C	NR	5E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1143	chr14	73203917	73203918	rs11158975	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q24.2	NR	rs11158975-C	0.286481	2E-10		0.013846	[0.0096-0.0181] unit decrease	NR [NR]	N
1143	chr14	73222828	73222829	rs75575287	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q24.2	NR	rs75575287-?	NR	3E-6	(Latino)	1.0865	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1143	chr14	73249418	73249419	rs74884082	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q24.2	DPF3	rs74884082-C	0.75	3E-10		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
1143	chr14	73249418	73249419	rs74884082	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q24.2	DPF3	rs74884082-C	0.76	7E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1143	chr14	73250679	73250680	rs11629434	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	14q24.2	DPF3	rs11629434-?	NR	2E-6		1.4285715	[1.19-1.69]	Illumina [at least 5000000] (imputed)	N
1144	chr14	73279419	73279420	rs4903064	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	1,992 European ancestry female cases, 3,095 European ancestry female controls	1,399 European ancestry female cases, 1,575 European ancestry female controls	14q24.2	DPF3	rs4903064-C	NR	2E-14		1.38	[1.27-1.50]	Illumina [~ 6000000] (imputed)	N
1144	chr14	73279419	73279420	rs4903064	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	14q24.2	DPF3	rs4903064-C	0.23	2E-24		1.21	1.16-1.25	Illumina [7437091] (imputed)	N
1144	chr14	73280417	73280418	rs7152005	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	14q24.2	DPF3	rs7152005-T	NR	2E-6	(Female)	2.13	[1.66-2.90]	Illumina [848325]	N
1144	chr14	73280827	73280828	rs17181902	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	WDR21A	rs17181902-?	NR	8E-6	(tyrosine)	0.39885122	[0.22-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
1144	chr14	73290355	73290356	rs11628905	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	14q24.2	DPF3	rs11628905-C	NR	3E-6		0.208406	[0.12-0.3] unit increase	Illumina [at least 950000] (imputed)	N
1144	chr14	73297740	73297741	rs2215590	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q24.2	DPF3	rs2215590-C		2E-8		0.161	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1144	chr14	73301699	73301704	rs60233779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q24.2		rs60233779-C	NR	2E-12		0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1144	chr14	73301803	73301804	rs202075571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.2		rs202075571-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1144	chr14	73310372	73310373	rs12888977	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	14q24.2	NR	rs12888977-?	NR	5E-6		0.0934995	[0.053-0.134] unit increase	NR [13958389] (imputed)	N
1144	chr14	73314449	73314450	rs61986330	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q24.2	DPF3	rs61986330-C	0.725696	1E-8		0.00873325	[0.0057-0.0117] unit increase	Affymetrix [12370749]	N
1144	chr14	73314449	73314450	rs61986330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q24.2		rs61986330-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1144	chr14	73317876	73317877	rs11158984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q24.2	NR	rs11158984-T	NR	3E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1144	chr14	73317876	73317877	rs11158984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q24.2	NR	rs11158984-T	NR	4E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q24.2	DPF3	rs6574100-T	0.402557	4E-14		0.01710252	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs6574100-T	0.342562	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs6574100-T	0.344595	1E-17				Affymetrix, Illumina [24558453] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q24.2	NR	rs6574100-T	0.399588	4E-16		0.015373	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q24.2	NR	rs6574100-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1144	chr14	73323681	73323682	rs6574100	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q24.2	NA	rs6574100-A	0.5887	1E-11		0.0118	[0.0085-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1144	chr14	73329843	73329844	rs12887388	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	14q24.2	DPF3	rs12887388-G	0.45	3E-7		1.32		Illumina [8974355] (imputed)	N
1144	chr14	73331794	73331795	rs10146616	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	14q24.2	NR	rs10146616-C		9E-6		0.0815	[0.046-0.117] SD units decrease	NR [10700000] (imputed)	N
1144	chr14	73341654	73341655	rs35020117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q24.2		rs35020117-G	NR	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1144	chr14	73345857	73345858	rs72732444	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	14q24.2	DPF3	rs72732444-A	0.17	4E-6		0.06	[0.04-0.08] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1144	chr14	73361269	73361270	rs3814864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	14q24.2		rs3814864-A	NR	5E-8		0.0535	[0.034-0.073] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1144	chr14	73375672	73375673	rs741226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.2	snoU13	rs741226-G	0.326164	2E-9		0.0135678	[0.0093-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1144	chr14	73382621	73382622	rs72732487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q24.2		rs72732487-A	0.305162	2E-10		0.015493709	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1144	chr14	73391592	73391593	rs7142086	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	14q24.2	DCAF4	rs7142086-?		2E-6		1.4705882	[1.25-1.72]	Illumina [NR]	N
1144	chr14	73392095	73392096	rs17182090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q24.2	DCAF4	rs17182090-T	0.305099	3E-10		0.0155243175	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1144	chr14	73393283	73393284	rs2098322	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q24.2	NR	rs2098322-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1144	chr14	73394121	73394122	rs2098321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.2	DCAF4	rs2098321-T	0.812137	2E-10		0.018444395	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1144	chr14	73399836	73399837	rs76891117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.2		rs76891117-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1145	chr14	73404751	73404752	rs2302588	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	14q24.2		rs2302588-?	NR	4E-6		1.05235	[1.03-1.07]	NR [688737]	N
1145	chr14	73404751	73404752	rs2302588	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	14q24.2	DCAF4	rs2302588-C	0.1	2E-8		0.048	[0.032-0.064] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1145	chr14	73404751	73404752	rs2302588	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	14q24.2	DCAF4	rs2302588-G	NR	9E-9		0.053	NR unit decrease	Illumina [6407959] (imputed)	N
1145	chr14	73412780	73412787	rs72472806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q24.2	NR	rs72472806-G	NR	2E-11		0.0267	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q24.2		rs2806044-G	NR	3E-13		0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q24.2	DCAF4	rs2806044-G	0.696282	4E-15		0.018909214	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q24.2	DCAF4	rs2806044-G	0.696332	4E-13		0.017493274	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs2806044-G	0.689837	1E-12				Affymetrix, Illumina [19872809] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q24.2	NR	rs2806044-G	0.694888	2E-13		0.015953	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1145	chr14	73414315	73414316	rs2806044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.2		rs2806044-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1145	chr14	73429165	73429166	rs8010674	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	14q24.2	DCAF4	rs8010674-C	0.63	3E-8	(japanese)	0.15	[0.091-0.209] year increase	Illumina [at least 532488] (imputed)	N
1145	chr14	73429165	73429166	rs8010674	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	14q24.2	DCAF4	rs8010674-C	0.63	1E-8				Illumina [at least 532488] (imputed)	N
1145	chr14	73431459	73431460	rs2806029	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q24.2	TRNA_Cys	rs2806029-G	NR	1E-10		0.0781317	[0.053-0.103] unit increase	Affymetrix [16832071] (imputed)	N
1145	chr14	73434530	73434531	rs2535896	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2535896-T	0.279774	4E-8		0.0518177	[0.032-0.072] increase	Affymetrix [11014269] (imputed)	N
1145	chr14	73439257	73439258	rs61988556	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	14q24.2	ZFYVE1	rs61988556-T	0.913857	2E-9		0.0222954	[0.015-0.03] unit increase	Affymetrix [NR] (imputed)	N
1145	chr14	73447239	73447240	rs2535922	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	14q24.2		rs2535922-A	0.609	2E-9		0.07	[-0.09--0.05] % decrease	Affymetrix [NR] (imputed)	N
1145	chr14	73449098	73449098	rs200299540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q24.2		rs200299540-GA	NR	7E-10		0.0249	[0.017-0.033] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1145	chr14	73456237	73456238	rs28609654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.2		rs28609654-?	NR	6E-36				NR [~ 8900000] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q24.2		rs1007934-A	NR	4E-21		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q24.2		rs1007934-A	NR	3E-11		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.2	ZFYVE1	rs1007934-A	0.416236	3E-19		0.020055428	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.2	NR	rs1007934-A	0.344443	2E-21				Affymetrix, Illumina [24332387] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q24.2	NR	rs1007934-A	0.413873	2E-23		0.018787	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.2		rs1007934-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.2		rs1007934-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1145	chr14	73463478	73463479	rs1007934	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q24.2	NR	rs1007934-A	NR	1E-8		5.73	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1145	chr14	73477605	73477606	rs369497605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.2	ZFYVE1	rs369497605-A	0.022045	2E-27		0.08612153	[0.071-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr14	73484383	73484384	rs2333021	28628665	Sobota RS	2017-06-19	PLoS Genet	A chromosome 5q31.1 locus associates with tuberculin skin test reactivity in HIV-positive individuals from tuberculosis hyper-endemic regions in east Africa.	Resistance to Mycobacterium tuberculosis in HIV-positive individuals measured by a negative tuberculin skin test (continuous)	244 cases, 225 controls		14q24.2	ZFYVE1	rs2333021-A		6E-6	(recessive model)	5.159	[2.955-7.362] unit increase	Illumina [542585]	N
1145	chr14	73484785	73484786	rs2535918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q24.2		rs2535918-T	NR	2E-9		0.0238	[0.016-0.031] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1145	chr14	73484785	73484786	rs2535918	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q24.2	NR	rs2535918-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1145	chr14	73525120	73525121	rs17570658	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	ZFYVE1	rs17570658-?	NR	5E-6	(tyrosine)	0.3967962	[0.23-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
1145	chr14	73528243	73528243	rs1271276057	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.2	NR	rs1271276057-AT	0.0122	9E-9	(MYL6)	0.09668	NR unit increase	Illumina [1671387] (imputed)	N
1145	chr14	73529093	73529094	rs2806048	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q24.2	NR	rs2806048-A	0.364811	2E-10		0.041699134	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1145	chr14	73529093	73529094	rs2806048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q24.2	Intergenic	rs2806048-A	0.6194	1E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1146	chr14	73559565	73559566	rs8009347	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q24.2	NR	rs8009347-T	0.533507	5E-20		0.0190765	[0.015-0.023] unit decrease	NR [NR]	N
1146	chr14	73579121	73579121	rs11392696	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q24.2	RBM25	rs11392696-G	0.3152	5E-13		0.2049	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1146	chr14	73582300	73582301	rs362439	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	14q24.2		rs362439-?	NR	2E-6		1.05818	[1.04-1.08]	NR [688737]	N
1146	chr14	73598401	73598402	rs144003826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q24.2		rs144003826-A	NR	6E-14		0.023	[0.017-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1146	chr14	73600346	73600346	rs139155492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q24.2	PSEN1	rs139155492-CTGTCCTGGGTGCA	0.093866	4E-10		0.02435803	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1146	chr14	73616094	73616095	rs10151436	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	14q24.2	PSEN1	rs10151436-A	0.8901	4E-11		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1146	chr14	73616094	73616095	rs10151436	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	14q24.2	PSEN1	rs10151436-A	0.887898	1E-8		0.0188241	[0.012-0.025] unit increase	Affymetrix [NR] (imputed)	N
1146	chr14	73647173	73647174	rs214267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.2	PAPLN	rs214267-?	NR	1E-6	(tyrosine)	0.21831599	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1146	chr14	73658136	73658137	rs17125457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.2	Intergenic	rs17125457-T	0.184	1E-8	(MTAG)	0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1147	chr14	73669205	73669206	rs184859844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.2	PSEN1	rs184859844-C	0.090616	4E-15		0.030806895	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1147	chr14	73706168	73706169	rs1145949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q24.2	PAPLN	rs1145949-G	0.0117	2E-10		0.106661	[0.074-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1147	chr14	73711393	73711394	rs2280792	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	14q24.2	PAPLN	rs2280792-?	NR	2E-7		0.2284	NR	Illumina [802276]	N
1147	chr14	73711952	73711953	rs61986932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.2		rs61986932-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1147	chr14	73712921	73712922	rs12895249	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q24.2	LOC101928123	rs12895249-T	0.797658	8E-12		0.00205025	[0.0015-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
1147	chr14	73736322	73736323	rs1980413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.2		rs1980413-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1147	chr14	73740249	73740250	rs113554206	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Macroalbuminuria in type 1 diabetes	2,751 European ancestry cases, 12,124 European ancestry controls	NA	14q24.2	PAPLN	rs113554206-A	0.012	5E-7		4.6	[NR]	Illumina [up to 49000000] (imputed)	N
1147	chr14	73756298	73756299	rs10483853	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Coronary artery calcification	Up to 678 individuals	NA	14q24.2	NUMB	rs10483853-?	NR	6E-6				Affymetrix [70897]	N
1147	chr14	73763640	73763641	rs148280750	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PYRIDNUCSYN.PWY..NAD.biosynthesis.I..from.aspartate.)	7,738 European ancestry individuals	NA	14q24.2		rs148280750-C	0.9293349755567187	3E-8		0.18529625	[0.12-0.25] unit decrease	Illumina [5584686] (imputed)	N
1147	chr14	73767213	73767214	rs2333194	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	14q24.3	NUMB	rs2333194-?	NR	7E-7		1.2	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1147	chr14	73773608	73773609	rs10141031	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.3	NR	rs10141031-?	NR	7E-13				Affymetrix [NR]	N
1148	chr14	73797668	73797669	rs12435797	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	14q24.3	NUMB	rs12435797-G	0.1859	4E-8		0.0173	[0.011-0.023] unit decrease	NR [NR]	N
1148	chr14	73832318	73832318	rs34521521	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	14q24.3	NUMB	rs34521521-?	NR	5E-8			[NR]	NR [NR] (imputed)	N
1148	chr14	73884539	73884540	rs10142359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q24.3		rs10142359-G	NR	3E-15		0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1148	chr14	73884539	73884540	rs10142359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q24.3	NUMB	rs10142359-G	0.481701	7E-15		0.017240448	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1148	chr14	73884539	73884540	rs10142359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs10142359-G	0.576345	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
1148	chr14	73889955	73889956	rs7153038	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	2,469 African American individuals	NA	14q24.3	NUMB	rs7153038-A	0.1571	3E-8				Affymetrix, Illumina [9900000] (imputed)	N
1149	chr14	73924759	73924760	rs78042854	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q24.3	NUMB	rs78042854-?	NR	4E-10		1.01	[0.67-1.35] unit decrease	Affymetrix [11100000] (imputed)	N
1149	chr14	73934879	73934880	rs7158218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.3		rs7158218-A	0.7117	6E-9		0.009	[0.0061-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1149	chr14	73937064	73937065	rs56175115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q24.3	RP1-240K6.3	rs56175115-A	0.217086	5E-9		0.016064994	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr14	73943439	73943440	rs7158675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.3	RP1-240K6.3	rs7158675-T	0.21782	4E-10		0.017208243	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1149	chr14	73954463	73954464	rs8012614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.3	Intergenic	rs8012614-A	0.4908	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1149	chr14	73954463	73954464	rs8012614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q24.3	Intergenic	rs8012614-A	0.4856	4E-10	(MTAG)	0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1149	chr14	73972534	73972535	rs2041073	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	14q24.3	HEATR4	rs2041073-T	0.54	3E-13	(X-13671)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1149	chr14	73976933	73976934	rs8018967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q24.3		rs8018967-C	NR	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1149	chr14	73976933	73976934	rs8018967	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	14q24.3	HEATR4	rs8018967-T	0.66	6E-19	(X-13215/X-13671)	0.033	[0.025-0.041] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1149	chr14	73981772	73981773	rs552609473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.3	HEATR4	rs552609473-C	0.220553	2E-10		0.01752056	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1149	chr14	73993368	73993369	rs11621061	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	14q24.3	HEATR4	rs11621061-T	0.199	4E-8		0.381	[0.24-0.52] unit increase	Affymetrix [NR] (imputed)	N
1149	chr14	74033593	74033594	rs11626972	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	14q24.3	ACOT2	rs11626972-G	0.43	3E-145	(X - 21792)	1.021	[0.94-1.1] unit decrease	Illumina [7750367] (imputed)	N
1149	chr14	74036612	74036613	rs61987137	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	14q24.3	ACOT4	rs61987137-T	0.22	1E-52	(X - 24330)	0.636	[0.55-0.72] unit decrease	Illumina [7750367] (imputed)	N
1149	chr14	74037680	74037687	rs1477063564	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs1477063564-T	0.3118	6E-11	(ACOT1)	0.204	NR unit increase	Illumina [1671387] (imputed)	N
1150	chr14	74056147	74056148	rs7159760	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	14q24.3	ACOT4	rs7159760-T	0.22	2E-25	(nonenedioate (C9:1-DC))	0.296	[0.24-0.35] unit decrease	Illumina [7750367] (imputed)	N
1150	chr14	74074731	74074732	rs55951657	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	14q24.3	ACOT4	rs55951657-A		4E-6		158.61	[91.56-225.66] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
1150	chr14	74075738	74075739	rs147204125	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in placebo-treated cardiovascular disease (time to event)	1,440 European, African American, Asian and other ancestry cases	NA	14q24.3	ACOT6	rs147204125-G	0.008	2E-8		2.86	[1.96-4.17]	Affymetrix, Illumina [9334585] (imputed)	N
1150	chr14	74075738	74075739	rs147204125	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in cardiovascular disease (time to event) (darapladib treatment interaction)	1,318 European, African American, Asian and other ancestry darapladib-treated cases, 1,440 European, African American, Asian and other ancestry placebo-treated cases	NA	14q24.3	ACOT6	rs147204125-G	0.008	2E-6				Affymetrix, Illumina [9334585] (imputed)	N
1150	chr14	74093879	74093880	rs78476982	31587654	Torres-Aguila NP	2019-10-07	Stroke	Genome-Wide Association Study of White Blood Cell Counts in Patients With Ischemic Stroke.	Leukocyte count in ischemic stroke	2,064 Spanish ancestry individuals	407 European ancestry individuals	14q24.3	NR	rs78476982-C	0.016	8E-9		0.63	[0.43-0.83] unit increase	Illumina [7340003] (imputed)	N
1150	chr14	74128944	74128945	rs45508195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.3		rs45508195-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1150	chr14	74141428	74141429	rs7140570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.3		rs7140570-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1151	chr14	74196721	74196722	rs568125826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q24.3	ELMSAN1	rs568125826-A	0.013966	4E-23		0.095871724	[0.077-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74204685	74204686	rs72721770	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q24.3	NR	rs72721770-G	0.651793	1E-9		0.0191253	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	14q24.3		rs533217053-C	NR	3E-11		0.0979	[0.069-0.127] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q24.3		rs533217053-C	NR	1E-12		0.0835	[0.06-0.107] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.00691299999999995	4E-21		0.129009	[0.1-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.00691699999999995	2E-16		0.13325672	[0.1-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.00691799999999998	9E-16		0.11013862	[0.083-0.137] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.0071	2E-22		0.2123602	[0.17-0.26] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.0071	2E-22		0.2118735	[0.17-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.0071	6E-10		0.1333969	[0.091-0.176] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.0071	2E-21		0.206528	[0.16-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74208345	74208366	rs533217053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	14q24.3	ELMSAN1	rs533217053-C	0.0071	4E-22		0.2102778	[0.17-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74211445	74211446	rs75025690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q24.3	ELMSAN1	rs75025690-A	0.013747	2E-22		0.09465907	[0.076-0.114] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74211445	74211446	rs75025690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q24.3	ELMSAN1	rs75025690-A	0.013745	4E-18		0.08440403	[0.065-0.103] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74211445	74211446	rs75025690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q24.3	ELMSAN1	rs75025690-A	0.0137389999999999	1E-27		0.10518777	[0.086-0.124] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q24.3	ELMSAN1	rs544453779-T	0.00692999999999999	9E-66		0.23713775	[0.21-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q24.3	ELMSAN1	rs544453779-T	0.00693100000000002	5E-62		0.23036636	[0.2-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q24.3	ELMSAN1	rs544453779-T	0.00694300000000003	9E-67		0.23756953	[0.21-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q24.3	ELMSAN1	rs544453779-T	0.00694399999999995	9E-65		0.23424314	[0.21-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs544453779-T	0.00666889	4E-18				Affymetrix, Illumina [21126107] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs544453779-T	0.00667639	1E-13				Affymetrix, Illumina [24653286] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q24.3	HEATR4	rs544453779-T		9E-14		0.079	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1151	chr14	74218568	74218569	rs544453779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	14q24.3	ELMSAN1	rs544453779-T	0.007	2E-9		0.1305901	[0.088-0.173] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74223966	74223967	rs114609788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3	ELMSAN1	rs114609788-A	0.023929	1E-11		0.049885795	[0.035-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q24.3		rs114165892-G	NR	3E-30		0.0895	[0.074-0.105] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q24.3		rs114165892-G	NR	2E-38		0.1014	[0.086-0.117] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q24.3		rs114165892-G	NR	2E-9		0.0454	[0.031-0.06] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	14q24.3		rs114165892-C	0.976	6E-32		0.43	[-0.5--0.36] % decrease	Affymetrix [NR] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.3	ELMSAN1	rs114165892-G	0.0239430000000001	3E-42		0.101248	[0.088-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74223967	74223968	rs114165892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.3	ELMSAN1	rs114165892-G	0.0239470000000001	2E-16		0.07079765	[0.054-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74224576	74224577	rs11844552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q24.3	ELMSAN1	rs11844552-G	0.024112	1E-30		0.084520176	[0.07-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1151	chr14	74224576	74224577	rs11844552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q24.3	NR	rs11844552-G	0.024184	2E-56		0.095797	[0.084-0.108] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1151	chr14	74238029	74238030	rs144991697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs144991697-A	0.0210105	2E-53				Affymetrix, Illumina [24246363] (imputed)	N
1151	chr14	74238029	74238030	rs144991697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs144991697-A	0.0209862	2E-64				Affymetrix, Illumina [20825802] (imputed)	N
1151	chr14	74238029	74238030	rs144991697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q24.3	NR	rs144991697-A	0.023815	6E-67		0.109333	[0.097-0.122] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1151	chr14	74238029	74238030	rs144991697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.3		rs144991697-?	NR	6E-63				NR [~ 8900000] (imputed)	N
1151	chr14	74238029	74238030	rs144991697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q24.3	ELMSAN1	rs144991697-A	0.0236	8E-15		0.09101853	[0.068-0.114] unit increase	Affymetrix [~ 2500000] (imputed)	N
1151	chr14	74245085	74245086	rs145864106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.3		rs145864106-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1151	chr14	74249809	74249810	rs11626364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q24.3	NR	rs11626364-C	NR	1E-11		0.0237	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr14	74249809	74249810	rs11626364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	14q24.3	NR	rs11626364-C	NR	1E-14		0.0256	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1151	chr14	74249809	74249810	rs11626364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	14q24.3	NR	rs11626364-C	NR	1E-12		0.0246	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr14	74249809	74249810	rs11626364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	14q24.3	NR	rs11626364-C	NR	7E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1151	chr14	74249809	74249810	rs11626364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q24.3	NR	rs11626364-C	NR	7E-13		0.0249	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	14q24.3		rs13379043-T	0.720126	1E-8		0.0261962	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q24.3		rs13379043-C	NR	4E-16		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q24.3	NR	rs13379043-T	0.720018	8E-24		0.0219466	[0.018-0.026] unit increase	Affymetrix [15000001]	N
1151	chr14	74250125	74250126	rs13379043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q24.3	ELMSAN1	rs13379043-T	0.719582	6E-20		0.0198078	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	14q24.3	ELMSAN1	rs13379043-T	0.719529	8E-10		0.0145274	[0.0099-0.0192] unit increase	Affymetrix [NR] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q24.3	ELMSAN1	rs13379043-T	0.719628	2E-22		0.0217249	[0.017-0.026] unit decrease	Affymetrix [NR] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	14q24.3	C14orf43, ELMSAN1	rs13379043-?	NR	4E-13		0.0212	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q24.3	NR	rs13379043-C	0.27896200000000004	3E-28		0.0100981	[0.0082-0.012] unit increase	Affymetrix [16582909] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q24.3	NR	rs13379043-C	0.27799300000000005	2E-16		0.0112783	[0.0085-0.014] unit increase	Affymetrix [16585854] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q24.3	NR	rs13379043-C	0.279975	3E-11		0.00793506	[0.0054-0.0105] unit increase	Affymetrix [16582621] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q24.3	NR	rs13379043-C	0.27896200000000004	2E-21		0.00953255	[0.0075-0.0116] unit increase	Affymetrix [16582965] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q24.3	NR	rs13379043-C	0.27799300000000005	9E-11		0.0100214	[0.0069-0.0132] unit increase	Affymetrix [16585866] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q24.3	NR	rs13379043-C	0.279975	2E-10		0.00828852	[0.0055-0.011] unit increase	Affymetrix [16582614] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q24.3	RP5-1021I20.1	rs13379043-T	0.6293	1E-8		0.0168	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1151	chr14	74250125	74250126	rs13379043	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	14q24.3	NR	rs13379043-C	0.27	2E-6		0.017	unit decrease	Illumina [242289]	N
1151	chr14	74250125	74250126	rs13379043	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q24.3	C14orf43	rs13379043-C	NR	2E-22		0.020495102	[0.016-0.025] unit increase	Illumina [242289]	N
1151	chr14	74250125	74250126	rs13379043	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	14q24.3	NR	rs13379043-C	0.27	2E-9		0.02	unit increase	Illumina [242289]	N
1151	chr14	74251848	74251849	rs141747997	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	14q24.3		rs141747997-?	NR	7E-6		1.1540273	[1.08415829141456-1.22839923844471]	Illumina [up to 7827597] (imputed)	N
1151	chr14	74306013	74306014	rs12896104	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	14q24.3	PTGR2	rs12896104-G	0.674497	3E-8		0.01535	[0.0099-0.0208] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1151	chr14	74307245	74307246	rs11621523	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	14q24.3	PTGR2, ZNF410, ENTPD5, FAM161B	rs11621523-?	NR	3E-6				Illumina [1365181]	N
1151	chr14	74307480	74307481	rs140328462	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	14q24.3	ELMSAN1, PTGR2	rs140328462-G	NR	5E-6		0.150819	[0.086-0.216] unit decrease	Illumina [at least 950000] (imputed)	N
1152	chr14	74341684	74341685	rs142209667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q24.3	PTGR2, RP5-1021I20.4	rs142209667-T	0.0185	5E-9		0.07687079	[0.051-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
1152	chr14	74361200	74361201	rs144918786	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	14q24.3	NR	rs144918786-?	NR	2E-23	(ENTP5)			Illumina [~ 4000000] (imputed)	N
1152	chr14	74368330	74368331	rs72627123	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	14q24.3	NR	rs72627123-?	NR	4E-6				Illumina [7427422] (imputed)	N
1152	chr14	74368646	74368647	rs1476754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs1476754-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1152	chr14	74420439	74420440	rs17094182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	14q24.3		rs17094182-A	0.307404	1E-8		0.0220867	[0.014-0.03] unit increase	Illumina [13476266] (imputed)	N
1152	chr14	74428285	74428286	rs7141392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD5	5,357 Icelandic ancestry individuals	NA	14q24.3		rs7141392-A	0.1092	1E-30		0.339703	[0.28-0.4] unit increase	Illumina [7506463] (imputed)	N
1152	chr14	74440118	74440119	rs17094448	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.3	ENTPD5	rs17094448-A	0.94578125	9E-94	(ENTPD5, 4437_56_3)	1.1020083	[1-1.2] unit increase	Illumina [> 1000000] (imputed)	N
1152	chr14	74440118	74440119	rs17094448	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q24.3	ENTPD5, CCDC176, ALDH6A1, LIN52, RP5-1021I20.7, RP5-1021I20.4, PTGR2, Y_RNA, RP5-1021I20.8, ZNF410, RP5-1021I20.5, RP5-1021I20.6, FAM161B, COQ6, AC005480.1, RN7SL530P	rs17094448-G	0.06861756	1E-60	(Ectonucleoside triphosphate diphosphohydrolase 5)	1.339	[1.19-1.49] unit decrease	Affymetrix [509946]	N
1153	chr14	74467249	74467250	rs59429148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	14q24.3		rs59429148-A	0.230025	1E-10		0.0267374	[0.019-0.035] unit decrease	Illumina [13478956] (imputed)	N
1153	chr14	74474395	74474396	rs117818304	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD5	5,357 Icelandic ancestry individuals	NA	14q24.3		rs117818304-C	0.05437	5E-155		1.02264	[0.95-1.1] unit decrease	Illumina [7506463] (imputed)	N
1153	chr14	74487520	74487521	rs57731447	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.3	ENTPD5	rs57731447-A	0.059	8E-87	(Ectonucleoside triphosphate diphosphohydrolase 5, ENTPD5.4437.56.3)	0.97	[0.87-1.07] unit decrease	Affymetrix [10572788] (imputed)	N
1153	chr14	74493691	74493692	rs62005083	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q24.3	CCDC176	rs62005083-T	0.1015	2E-12		0.04126142	[0.03-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1153	chr14	74495653	74495653	rs759410236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q24.3	CCDC176	rs759410236-CCACA	0.115169	4E-10		0.02191568	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr14	74495653	74495653	rs759410236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q24.3	CCDC176	rs759410236-CCACA	0.115248	8E-9		0.020371366	[0.013-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr14	74514119	74514120	rs59192843	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	14q24.3	BBOF1 (CCDC176)	rs59192843-G	0.059151	4E-6		0.065497	[0.038-0.093] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1153	chr14	74528022	74528023	rs10140252	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	14q24.3	NR	rs10140252-T	0.16	1E-25		0.53	[0.43-0.63] unit increase	Affymetrix [9231066] (imputed)	N
1153	chr14	74528022	74528023	rs10140252	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	14q24.3	NR	rs10140252-T	0.16	1E-25		0.53	[0.43-0.63] unit increase	Affymetrix [9231066] (imputed)	N
1153	chr14	74528022	74528023	rs10140252	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	14q24.3	NR	rs10140252-T	0.16	1E-13		0.49	[0.35-0.63] unit increase	Affymetrix [9231066] (imputed)	N
1153	chr14	74536730	74536731	rs72725929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.3	ALDH6A1, AC005484.5, CCDC176	rs72725929-T	0.118072	9E-14		0.02548795	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1153	chr14	74536730	74536731	rs72725929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.3		rs72725929-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1153	chr14	74547317	74547318	rs7148979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q24.3	NR	rs7148979-T	0.879331	3E-141		0.072984	[0.067-0.079] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1153	chr14	74547317	74547318	rs7148979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.3		rs7148979-?	NR	7E-128				NR [~ 8900000] (imputed)	N
1153	chr14	74547317	74547318	rs7148979	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q24.3	CCDC176	rs7148979-A	NR	4E-38		0.0745125	[0.063-0.086] unit decrease	Affymetrix [16832071] (imputed)	N
1153	chr14	74547317	74547318	rs7148979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q24.3	ALDH6A1, CCDC176, AC005484.5	rs7148979-A	0.1212	5E-44		0.07528003	[0.065-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1153	chr14	74551969	74551970	rs2239557	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	14q24.3	NR	rs2239557-?	NR	3E-7	(morningness)			Illumina [535076]	N
1153	chr14	74572359	74572360	rs7160336	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q24.3	ALDH6A1, LIN52, CCDC176, ENTPD5, RN7SL530P, RP5-892G5.2	rs7160336-G	0.4939698	6E-18	(Ectonucleoside triphosphate diphosphohydrolase 5)	0.3849	[0.3-0.47] unit decrease	Affymetrix [509946]	N
1154	chr14	74585863	74585864	rs543503099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3	LIN52	rs543503099-C	0.348995	4E-12		0.020893566	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr14	74588428	74588429	rs11332437	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.3	NR	rs11332437-C	0.474	1E-27	(Ectonucleoside triphosphate diphosphohydrolase 5, ENTPD5.4437.56.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1154	chr14	74592755	74592758	rs763731423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q24.3		rs763731423-A	NR	2E-9		0.0257	[0.017-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1154	chr14	74631756	74631757	rs2358628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.3	Intergenic	rs2358628-A	0.3186	2E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1154	chr14	74631756	74631757	rs2358628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.3		rs2358628-A	0.3122	2E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1154	chr14	74631756	74631757	rs2358628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.3	Intergenic	rs2358628-A	0.3122	3E-10	(MTAG)	0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1154	chr14	74633285	74633286	rs4903199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3	LIN52	rs4903199-C	0.827845	1E-29		0.051035117	[0.042-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr14	74635748	74635749	rs62006777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs62006777-T	0.882094	9E-138				Affymetrix, Illumina [22063850] (imputed)	N
1154	chr14	74637584	74637585	rs58342051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q24.3	LIN52	rs58342051-A	0.706092	2E-19		0.023171315	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr14	74644894	74644895	rs565732042	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	14q24.3	LIN52	rs565732042-T	0.0017	5E-6		1.0956	[0.63-1.57] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1154	chr14	74660507	74660508	rs4903203	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q24.3	LIN52	rs4903203-A	0.3237	2E-10		1.0250076		Affymetrix [11880941] (imputed)	N
1154	chr14	74663597	74663598	rs62006791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.3		rs62006791-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1154	chr14	74665392	74665393	rs56220902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q24.3	LIN52	rs56220902-C	0.111984	2E-18		0.0334121	[0.027-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr14	74666224	74666225	rs45569432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3	LIN52	rs45569432-C	0.117353	4E-26		0.05081558	[0.041-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr14	74666640	74666641	rs887595	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q24.3	LIN52	rs887595-?	NR	8E-36		1.116	[0.94-1.29] unit decrease	Affymetrix [11100000] (imputed)	N
1154	chr14	74669892	74669893	rs4899502	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	14q24.3		rs4899502-A	0.6869	2E-11		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1154	chr14	74686557	74686558	rs1548770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.3		rs1548770-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1154	chr14	74689643	74689644	rs747324	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	14q24.3	NR	rs747324-C		2E-6		0.0855	[0.051-0.12] SD units increase	NR [10700000] (imputed)	N
1154	chr14	74690982	74690983	rs8019455	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Osteoporosis-related phenotypes (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	14q24.3	intergenic	rs8019455-?	NR	3E-6	(spine area MTAG)	0.189	[NR] unit decrease	Affymetrix [NR]	N
1155	chr14	74718798	74718799	rs4903214	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	14q24.3	VSX2	rs4903214-?	NR	8E-6		1.5393178	[1.27-1.87]	Illumina [2612357]	N
1155	chr14	74729206	74729207	rs6574170	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	14q24.3	VSX2	rs6574170-?	NR	3E-6		5.29	2.63-10.67	Illumina [~ 18000000] (imputed)	N
1155	chr14	74734162	74734163	rs149564368	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	14q24.3	NR	rs149564368-T	NR	9E-6		3.199	[1.91-5.35]	Illumina [13976150] (imputed)	N
1155	chr14	74813761	74813762	rs8003055	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	14q24.3		rs8003055-?	NR	4E-6		0.96080023	[0.944692427011188-0.977182676278188]	Illumina [up to 7827597] (imputed)	N
1155	chr14	74817417	74817418	rs10141786	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q24.3	VRTN	rs10141786-A	0.4017	1E-18		0.0213	[0.017-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1155	chr14	74817417	74817418	rs10141786	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	14q24.3	VRTN	rs10141786-A	0.4017	3E-14		0.0182	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1155	chr14	74817417	74817418	rs10141786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q24.3		rs10141786-?	NR	9E-26				NR [~ 8900000] (imputed)	N
1156	chr14	74856054	74856055	rs75448370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs75448370-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1156	chr14	74871735	74871736	rs72730160	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	14q24.3	NR	rs72730160-G	0.041	2E-7	(Unifrac metric)	5.0906305	NR z-score increase	Illumina [5293637] (imputed)	N
1156	chr14	74873225	74873226	rs2240621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q24.3	Intergenic	rs2240621-T	0.6296	3E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr14	74881832	74881833	rs10144920	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	14q24.3	NR	rs10144920-A	0.0245171	7E-6				Illumina [5378266] (imputed)	N
1156	chr14	74889869	74889870	rs730384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.3	Intergenic	rs730384-A	0.4398	4E-11	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr14	74889869	74889870	rs730384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q24.3		rs730384-A	0.4388	9E-13		0.0101	[0.0074-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1156	chr14	74889869	74889870	rs730384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.3	Intergenic	rs730384-A	0.4388	2E-15	(MTAG)	0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr14	74889869	74889870	rs730384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q24.3	Intergenic	rs730384-A	0.4406	2E-10	(MTAG)	0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr14	74918530	74918531	rs187178333	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	14q24.3	NR	rs187178333-G	0.01	1E-6		2.26	[1.93-2.59]	Illumina [8468885] (imputed)	N
1156	chr14	74925149	74925150	rs113625761	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	14q24.3	NR	rs113625761-G		2E-8		0.36	[0.24-0.48] unit increase	NR [NR]	N
1156	chr14	74929720	74929721	rs73294447	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	14q24.3	NPC2	rs73294447-T	0.99	3E-8				Affymetrix, Illumina [8002429] (imputed)	N
1156	chr14	74932640	74932641	rs12586772	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q24.3	NR	rs12586772-T	0.3963	6E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1156	chr14	74937455	74937456	rs73294470	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	14q24.3	NR	rs73294470-G		3E-10		0.3	[0.2-0.4] unit increase	NR [NR]	N
1156	chr14	74941080	74941081	rs10873267	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,367 Icelandic ancestry individuals	NA	14q24.3		rs10873267-A	0.3818	2E-13		0.137748	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
1156	chr14	74947403	74947404	rs140130028	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.3	NPC2	rs140130028-T	0.011	4E-30	(Cathepsin H, CTSH.3737.6.3)	1.31	[1.07-1.55] unit increase	Affymetrix [10572788] (imputed)	N
1156	chr14	74948179	74948180	rs8008540	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q24.3	NR	rs8008540-C	0.5688	8E-11		0.0301	[0.021-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1156	chr14	74949800	74949801	rs73294488	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q24.3	DPF3, DCAF4, ZFYVE1, RBM25, PSEN1, ENTPD5, CCDC176, ALDH6A1, LIN52, VSX2, VRTN, NPC2, LTBP2, FCF1, PGF, MLH3, ZC2HC1C, TMED10	rs73294488-?		7E-25				Affymetrix, Illumina [NR] (imputed)	N
1156	chr14	74960368	74960370	rs3047739	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q24.3	NR	rs3047739-T	0.595	6E-20	(Cathepsin H, CTSH.3737.6.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1156	chr14	74962274	74962275	rs11159086	26915486	Adams JN	2016-02-23	Gene	Genetic analysis of advanced glycation end products in the DHS MIND study.	Advanced glycation end-product levels	399 diabetes cases, 107 non-diabetes controls from 240 families	NA	14q24.3	NPC2, ISCA2	rs11159086-?	NR	3E-6		0.18	[0.11-0.25] unit decrease	Affymetrix [371951]	N
1156	chr14	74964902	74964903	rs74384554	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	14q24.3	LTBP2	rs74384554-T	0.986	1E-11		0.417	[0.3-0.54] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1156	chr14	74965629	74965630	rs73296215	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	14q24.3	LTBP2	rs73296215-?	NR	1E-8		0.3178	[0.21-0.43] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1157	chr14	74977381	74977382	rs12898083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q24.3		rs12898083-T	NR	5E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1157	chr14	74980979	74980980	rs862051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q24.3	NR	rs862051-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1157	chr14	74981881	74981882	rs862049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q24.3	LTBP2	rs862049-C	NR	6E-13		0.0234139	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1157	chr14	74982148	74982149	rs862048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q24.3	NR	rs862048-?	NR	7E-32				Affymetrix [~ 8270000] (imputed)	N
1157	chr14	74982148	74982149	rs862048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q24.3		rs862048-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1157	chr14	74983840	74983841	rs2302114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q24.3	LTBP2	rs2302114-T	NR	8E-9		0.0164537	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1157	chr14	74984367	74984368	rs862045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q24.3		rs862045-G	NR	5E-49		0.0206	[0.018-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1157	chr14	74984367	74984368	rs862045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q24.3		rs862045-G	0.753268	1E-12		0.016816	[0.012-0.021] unit increase	Illumina [13479295] (imputed)	N
1157	chr14	74984367	74984368	rs862045	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q24.3	LTBP2	rs862045-?	NR	2E-17		0.02837407	[0.022-0.035] unit increase	Illumina [27896057] (imputed)	N
1157	chr14	74986402	74986403	rs862041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs862041-?	NR	2E-66				NR [~ 8900000] (imputed)	N
1157	chr14	74987571	74987572	rs4899520	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	14q24.3	LTBP2	rs4899520-A	0.583	1E-10	(AA)	0.044	[0.03-0.058] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1157	chr14	74987571	74987572	rs4899520	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	14q24.3	LTBP2	rs4899520-A		5E-27				Affymetrix, Illumina [17972582] (imputed)	N
1157	chr14	74987571	74987572	rs4899520	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	14q24.3	LTBP2	rs4899520-A	0.584	4E-7	(AA)	0.042	[0.026-0.058] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1157	chr14	74987571	74987572	rs4899520	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q24.3	LTBP2	rs4899520-A	0.6262	3E-6		0.0307	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1157	chr14	74989432	74989433	rs699371	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	14q24.3	NR	rs699371-?	NR	4E-7		0.03274858	[0.02-0.045] unit increase	Illumina [34656550] (imputed)	N
1157	chr14	74989432	74989433	rs699371	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	14q24.3	LTBP2	rs699371-T	0.2	2E-12		0.043	[0.027-0.059] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1157	chr14	74990745	74990746	rs862034	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	14q24.3	NR	rs862034-?	NR	3E-6		0.02797843	[0.016-0.04] unit increase	Illumina [34656550] (imputed)	N
1157	chr14	74990745	74990746	rs862034	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	14q24.3	LTBP2	rs862034-A	0.361	6E-20		0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1157	chr14	74990745	74990746	rs862034	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q24.3	LTBP2	rs862034-A	0.36	7E-14		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1157	chr14	75018085	75018086	rs55971017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.3		rs55971017-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1157	chr14	75021463	75021464	rs61980882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q24.3		rs61980882-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1157	chr14	75034698	75034699	rs3825710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q24.3	LTBP2	rs3825710-A	NR	1E-8		0.017712	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1157	chr14	75047287	75047288	rs4903245	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q24.3		rs4903245-G	0.61978	5E-10		0.043711	[0.03-0.057] unit increase	Affymetrix [15580782] (imputed)	N
1157	chr14	75068920	75068921	rs79300315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q24.3	LTBP2	rs79300315-A	NR	6E-9		0.0469444	[0.031-0.063] unit decrease	Affymetrix [321114] (imputed)	N
1157	chr14	75074315	75074316	rs11159091	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q24.3	LTBP2	rs11159091-A	0.4602	3E-13		0.1793	[0.13-0.23] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1157	chr14	75079703	75079704	rs2165197	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q24.3	LTBP2	rs2165197-T	0.5111	6E-11		0.1245	[0.087-0.162] mmHg decrease	Affymetrix [NR] (imputed)	N
1157	chr14	75079703	75079704	rs2165197	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs2165197-T	NR	4E-8		5.502	z score decrease	Affymetrix [10847151] (imputed)	N
1157	chr14	75084828	75084829	rs754458	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	14q24.3	LTBP2, AREL1	rs754458-A	NR	2E-13		0.0522	unit increase	Illumina [15409056] (imputed)	N
1157	chr14	75091804	75091805	rs12100626	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	14q24.3	Intergenic	rs12100626-T	NR	1E-6		4.13		Illumina [2711511] (imputed)	N
1157	chr14	75095532	75095533	rs17101543	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	14q24.3	Intergenic	rs17101543-A	NR	3E-6		4.02		Illumina [2711511] (imputed)	N
1157	chr14	75098312	75098313	rs11159096	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q24.3	LTBP2	rs11159096-A	0.5221	2E-11		0.1777	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1157	chr14	75099882	75099883	rs11159097	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs11159097-C	NR	5E-8		0.01308	[0.0084-0.0178] unit increase	Affymetrix [10847151] (imputed)	N
1157	chr14	75101981	75101982	rs11852134	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	14q24.3		rs11852134-A	0.51	8E-9		1.14		NR [NR] (imputed)	N
1157	chr14	75101981	75101982	rs11852134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	14q24.3		rs11852134-G	NR	5E-9		0.0708	[0.047-0.095] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1158	chr14	75104904	75104905	rs888414	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	14q24.3		rs888414-G	0.61	9E-10		1.26		NR [NR] (imputed)	N
1158	chr14	75109194	75109195	rs888415	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs888415-A	NR	1E-8		0.01375	[0.009-0.0185] unit decrease	Affymetrix [10847151] (imputed)	N
1158	chr14	75113681	75113682	rs7154563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q24.3	Intergenic	rs7154563-T	0.5446	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr14	75123373	75123374	rs12434356	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	14q24.3	NR	rs12434356-A	0.492578	4E-12		6.94	z score increase	NR [10847151] (imputed)	N
1158	chr14	75125539	75125540	rs7152906	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	14q24.3		rs7152906-?	NR	4E-9				NR [8243736]	N
1158	chr14	75125539	75125540	rs7152906	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	14q24.3		rs7152906-?	NR	6E-15		0.0229	unit decrease	NR [NR]	N
1158	chr14	75125539	75125540	rs7152906	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q24.3	NR	rs7152906-T	0.4804	2E-9		0.024836998	[0.017-0.033] unit decrease	NR [NR]	N
1158	chr14	75125539	75125540	rs7152906	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs7152906-T	NR	1E-13		0.01765	[0.013-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1158	chr14	75125539	75125540	rs7152906	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	14q24.3	LTBP2	rs7152906-T	0.492806	1E-10		6.43	unit decrease	NR [10847151] (imputed)	N
1158	chr14	75128315	75128316	rs16661	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.3	AREL1	rs16661-A	NR	6E-9		0.01021	[0.0068-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
1158	chr14	75130234	75130235	rs1045430	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	14q24.3	NR	rs1045430-G	NR	1E-10		1.0309278		NR [NR] (imputed)	N
1158	chr14	75130234	75130235	rs1045430	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	14q24.3	NR	rs1045430-G	0.5208	4E-25		1.0224949	[1.02-1.03]	NR [8098588] (imputed)	N
1158	chr14	75130234	75130235	rs1045430	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs1045430-T	NR	1E-14		7.716	z score decrease	Affymetrix [10847151] (imputed)	N
1158	chr14	75137663	75137664	rs2302832	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q24.3	NR	rs2302832-C	0.523891930734665	1E-17		0.007886759	[0.0061-0.0097] unit increase	NR [NR]	N
1158	chr14	75151046	75151047	rs9671386	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.3	AREL1	rs9671386-G	NR	2E-10		0.011104	[0.0077-0.0145] unit increase	Affymetrix [18485882] (imputed)	N
1158	chr14	75151046	75151047	rs9671386	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs9671386-G	NR	7E-12		0.01875	[0.013-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
1158	chr14	75151046	75151047	rs9671386	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs9671386-A	NR	8E-16		8.047	z score increase	Affymetrix [10847151] (imputed)	N
1158	chr14	75151046	75151047	rs9671386	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	14q24.3	LTBP2	rs9671386-A	0.256164	2E-9		5.98	z score increase	NR [10847151] (imputed)	N
1158	chr14	75156294	75156295	rs2359142	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q24.3		rs2359142-T	0.45919	3E-9		0.040687	[0.027-0.054] unit increase	Affymetrix [15580782] (imputed)	N
1158	chr14	75164140	75164141	rs12587457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q24.3	NR	rs12587457-T	0.506078786895446	7E-12		0.009400034	[0.0067-0.0121] unit increase	NR [NR]	N
1158	chr14	75164140	75164141	rs12587457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q24.3	NR	rs12587457-T	0.506078786895446	4E-17		0.012463888	[0.0096-0.0154] unit increase	NR [NR]	N
1158	chr14	75164140	75164141	rs12587457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	14q24.3	NR	rs12587457-T	0.506078786895446	1E-11		0.01001217	[0.0071-0.0129] unit increase	NR [NR]	N
1158	chr14	75164140	75164141	rs12587457	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q24.3	NR	rs12587457-T	0.506078786895446	4E-17		0.007968288	[0.0061-0.0098] unit increase	NR [NR]	N
1158	chr14	75171682	75171683	rs8004430	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	14q24.3	NR	rs8004430-?	NR	4E-8		0.01426	[0.0092-0.0193] unit decrease	Affymetrix [10847151] (imputed)	N
1158	chr14	75186009	75186010	rs7147721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q24.3		rs7147721-A	0.537933	3E-10		0.026091	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1158	chr14	75186009	75186010	rs7147721	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	14q24.3	FCF1	rs7147721-A	0.4722	3E-18		0.019671042	[0.015-0.025] unit decrease	NR [9417325] (imputed)	N
1158	chr14	75186009	75186010	rs7147721	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	14q24.3	FCF1	rs7147721-A	0.4722	3E-16		0.018722247	[0.014-0.024] unit decrease	NR [9417325] (imputed)	N
1158	chr14	75186009	75186010	rs7147721	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q24.3		rs7147721-?	NR	1E-8				NR [NR]	N
1158	chr14	75186009	75186010	rs7147721	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q24.3		rs7147721-?	NR	2E-9				NR [NR]	N
1158	chr14	75186009	75186010	rs7147721	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	14q24.3	NR	rs7147721-A	0.528	3E-6		0.015989635	[0.0093-0.0227] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1158	chr14	75197111	75197112	rs78401867	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q24.3	FCF1	rs78401867-A	0.0309850386016032	7E-6	(F_Sutterellaceae_HB)	1.13051	[0.64-1.62] unit decrease	Illumina [7711310] (imputed)	N
1158	chr14	75204514	75204515	rs2111703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.3		rs2111703-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1158	chr14	75207262	75207263	rs35641442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	14q24.3		rs35641442-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1158	chr14	75228646	75228647	rs7146395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs7146395-C	0.686477	1E-14				Affymetrix, Illumina [24588908] (imputed)	N
1158	chr14	75228646	75228647	rs7146395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q24.3	NR	rs7146395-C	0.673017	1E-16		0.016248	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1158	chr14	75228646	75228647	rs7146395	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q24.3	YLPM1	rs7146395-C	0.6738	5E-9		0.02272439	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1158	chr14	75230952	75230953	rs45599947	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q24.3	NR	rs45599947-T	0.0744519405716642	3E-8		0.01190613	[0.0077-0.0161] unit increase	NR [NR]	N
1158	chr14	75230952	75230953	rs45599947	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	14q24.3	NR	rs45599947-T	0.0744519405716642	3E-8		0.015483722	[0.01-0.021] unit increase	NR [NR]	N
1158	chr14	75230952	75230953	rs45599947	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q24.3	NR	rs45599947-T	0.0744519405716642	3E-8		0.00990448	[0.0064-0.0134] unit increase	NR [NR]	N
1158	chr14	75234100	75234101	rs2193596	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	14q24.3	ACYP1	rs2193596-T	0.309866	5E-9		5.86	z score decrease	NR [10847151] (imputed)	N
1158	chr14	75234829	75234830	rs12889665	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	14q24.3	NR	rs12889665-G	0.538	3E-8		1.0288066	[1.02-1.04]	NR [5276842] (imputed)	N
1158	chr14	75234829	75234830	rs12889665	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.3	YLPM1	rs12889665-T	NR	1E-9		0.010556	[0.0071-0.014] unit increase	Affymetrix [18485882] (imputed)	N
1159	chr14	75237769	75237770	rs10144845	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	14q24.3	NR	rs10144845-C	0.317	4E-13		0.01389	[0.01-0.018] unit decrease	NR [8968716] (imputed)	N
1159	chr14	75237769	75237770	rs10144845	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	14q24.3	NR	rs10144845-C	NR	1E-10		0.01604	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1159	chr14	75237769	75237770	rs10144845	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q24.3	ZC2HC1C	rs10144845-T	0.320298	1E-13		7.4	z score increase	NR [10847151] (imputed)	N
1159	chr14	75237769	75237770	rs10144845	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	14q24.3	NEK9	rs10144845-T	0.320298	1E-9		6.12	z score increase	NR [10847151] (imputed)	N
1159	chr14	75252586	75252587	rs7154256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q24.3	YLPM1	rs7154256-C	0.469319	2E-13		0.016556565	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr14	75254166	75254167	rs34956813	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q24.3	NR	rs34956813-A	0.4624	7E-10				NR [9056863] (imputed)	N
1159	chr14	75254761	75254762	rs35809608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q24.3	YLPM1	rs35809608-G	0.469178	2E-12		0.015930537	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr14	75255114	75255115	rs35769520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q24.3		rs35769520-A	NR	7E-14		0.0154	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1159	chr14	75261640	75261641	rs2111705	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q24.3	YLPM1	rs2111705-G	0.456114	5E-14		0.0148521	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1159	chr14	75268920	75268921	rs397852991	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	53,525 European ancestry cases, 60,443 European ancestry controls	NA	14q24.3	LTBP2, AREL1, FCF1, YLPM1, PROX2, DLST, RPS6KL1, PGF, EIF2B2, MLH3	rs397852991-C	0.606	3E-9		0.053	[0.036-0.07] unit increase	Affymetrix [8797848] (imputed)	N
1159	chr14	75268920	75268921	rs397852991	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	43,660 European ancestry cases without a psychiatric disorder diagnosis, 60,443 European ancestry controls	NA	14q24.3	LTBP2, AREL1, FCF1, YLPM1, PROX2, DLST, RPS6KL1, PGF, EIF2B2, MLH3	rs397852991-C	0.673	1E-6		0.045	[0.027-0.063] unit increase	Affymetrix [8797848] (imputed)	N
1159	chr14	75270634	75270635	rs2270431	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.3	intergenic	rs2270431-T	0.32023	3E-13		7.292	z score decrease	Illumina [18485882] (imputed)	N
1159	chr14	75276078	75276079	rs957345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	14q24.3		rs957345-G	NR	1E-11		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1159	chr14	75276078	75276079	rs957345	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	14q24.3	YLPM1, PROX2, EIF2B2	rs957345-C	0.46	2E-9		0.029	unit decrease	NR [2324712] (imputed)	N
1159	chr14	75278180	75278181	rs12896360	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	14q24.3	YLPM1	rs12896360-A	NR	2E-11		0.011741	[0.0083-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1159	chr14	75278180	75278181	rs12896360	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	14q24.3	NR	rs12896360-A	0.320055	9E-9		5.76	z score decrease	NR [10847151] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3		rs12588415-G	NR	8E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3		rs12588415-G	0.531	3E-6	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3	NR	rs12588415-G	NR	1E-8		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3		rs12588415-G	NR	6E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3		rs12588415-G	NR	5E-6	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75278210	75278211	rs12588415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3	NR	rs12588415-G	NR	3E-6		0.015	unit increase	Affymetrix [at least 7091467] (imputed)	N
1159	chr14	75282115	75282116	rs12432026	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q24.3		rs12432026-G	0.54	1E-13				NR [NR] (imputed)	N
1159	chr14	75282115	75282116	rs12432026	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	14q24.3		rs12432026-G	0.54	2E-17		0.015	mmol/L decrease	NR [NR] (imputed)	N
1159	chr14	75282115	75282116	rs12432026	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q24.3		rs12432026-G	0.54	5E-10		0.009	% increase	NR [NR] (imputed)	N
1159	chr14	75282873	75282874	rs5809679	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	14q24.3	NR	rs5809679-?	NR	6E-6		0.037788	[0.021-0.054] unit increase	Affymetrix [9658292] (imputed)	N
1159	chr14	75296830	75296831	rs10148293	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	14q24.3	NR	rs10148293-G	0.5385	1E-7		0.0062	[0.0038-0.0086] unit increase	NR [7666894] (imputed)	N
1159	chr14	75297726	75297727	rs973879	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	14q24.3	YLPM1	rs973879-?	NR	4E-25		0.692	[0.56-0.83] unit decrease	Affymetrix [11100000] (imputed)	N
1159	chr14	75298636	75298637	rs7144654	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs7144654-A	NR	6E-13		7.208	z score decrease	Affymetrix [10847151] (imputed)	N
1159	chr14	75310811	75310812	rs2058919	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q24.3		rs2058919-?	NR	1E-9				NR [NR]	N
1159	chr14	75310811	75310812	rs2058919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.3		rs2058919-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1159	chr14	75321713	75321714	rs61978928	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	14q24.3	PROX2	rs61978928-T	NR	2E-7				Affymetrix [11535925] (imputed)	N
1159	chr14	75321713	75321714	rs61978928	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	14q24.3	PROX2	rs61978928-T	0.688	2E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix [11535925] (imputed)	N
1159	chr14	75321713	75321714	rs61978928	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	14q24.3	NR	rs61978928-T	NR	3E-7				Affymetrix [11535925] (imputed)	N
1159	chr14	75322793	75322794	rs8014204	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q24.3		rs8014204-A	0.5334	2E-10		0.13638785	[0.093-0.18] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1159	chr14	75322793	75322794	rs8014204	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q24.3	PROX2	rs8014204-A	NR	1E-7		0.01061505	[0.0067-0.0145] unit increase	Illumina [242289]	N
1159	chr14	75322793	75322794	rs8014204	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	14q24.3	NR	rs8014204-A	0.55	3E-8		0.016	unit increase	Illumina [242289]	N
1159	chr14	75322793	75322794	rs8014204	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	14q24.3	NR	rs8014204-A	0.53	5E-6		0.065	[0.04-0.10] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1159	chr14	75325545	75325549	rs367557046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q24.3	PROX2	rs367557046-T	0.294795	8E-17		0.02036338	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1159	chr14	75326770	75326771	rs2359239	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q24.3		rs2359239-?	NR	5E-9				NR [NR]	N
1159	chr14	75326770	75326771	rs2359239	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q24.3		rs2359239-?	NR	3E-9				NR [NR]	N
1159	chr14	75326770	75326771	rs2359239	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	14q24.3	NR	rs2359239-C	0.6144	6E-9		0.0166	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
1159	chr14	75327442	75327443	rs722599	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs722599-C	NR	3E-10		0.01534	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1159	chr14	75327442	75327443	rs722599	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs722599-T	NR	8E-14		7.476	z score increase	Affymetrix [10847151] (imputed)	N
1159	chr14	75327442	75327443	rs722599	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q24.3	NR	rs722599-C	0.4301501460374	8E-6	(IGP22)	0.1395	[0.078-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
1159	chr14	75334198	75334199	rs4553560	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	14q24.3	NR	rs4553560-C	0.5313	7E-9		0.0123	[0.0082-0.0164] unit decrease	Illumina [NR] (imputed)	N
1159	chr14	75341138	75341139	rs11159106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q24.3		rs11159106-G	0.47	9E-14		7.46	z score increase	Affymetrix [9061022] (imputed)	N
1159	chr14	75342953	75342954	rs61978932	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	14q24.3	NR	rs61978932-T	0.313433	2E-9		6.04	z score decrease	NR [10847151] (imputed)	N
1159	chr14	75343828	75343829	rs4903264	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	14q24.3		rs4903264-A	0.440526	4E-8		0.0230518	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1159	chr14	75343876	75343877	rs4903265	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	14q24.3	NR	rs4903265-T	0.312786	1E-12		7.08	z score decrease	NR [10847151] (imputed)	N
1159	chr14	75346739	75346740	rs28426374	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs28426374-T	NR	2E-12		0.01675	[0.012-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1159	chr14	75347040	75347041	rs3759741	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	14q24.3	NR	rs3759741-A	0.454476	2E-9		6.03	unit increase	NR [10847151] (imputed)	N
1159	chr14	75347584	75347585	rs10083386	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	14q24.3		rs10083386-A	0.4636	5E-9		0.0776844	[0.052-0.104] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1159	chr14	75347584	75347585	rs10083386	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	14q24.3	intergenic	rs10083386-A		7E-6		0.20537831	[0.12-0.29] unit decrease	Illumina [247039]	N
1159	chr14	75356809	75356809	rs398118380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q24.3		rs398118380-TA	NR	7E-11		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1159	chr14	75359228	75359229	rs2300598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs2300598-C	0.303167	1E-14				Affymetrix, Illumina [23467995] (imputed)	N
1159	chr14	75360905	75360906	rs2070598	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.3	DLST	rs2070598-A	0.4559	6E-27		0.0204	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1159	chr14	75360905	75360906	rs2070598	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q24.3	NR	rs2070598-A	0.456432	5E-10		0.0431227	[0.03-0.056] unit increase	Affymetrix [17914406] (imputed)	N
1159	chr14	75363640	75363641	rs17093914	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA		NR	rs17093914-T	0.312717	1E-8		5.69	z score decrease	NR [10847151] (imputed)	N
1159	chr14	75365728	75365729	rs732765	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	14q24.3	DLST	rs732765-G	0.257	7E-6	(Additive model)			Affymetrix [271817]	N
1160	chr14	75368507	75368508	rs2853779	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	14q24.3	LTBP2	rs2853779-A	0.45354	4E-12		6.94	z score decrease	NR [10847151] (imputed)	N
1160	chr14	75368547	75368548	rs11325303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q24.3	DLST	rs11325303-A	0.518402	5E-10		0.014284589	[0.0098-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr14	75373033	75373034	rs3742785	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	14q24.3	RPS6KL1	rs3742785-A	0.7866	2E-9		0.0707	[0.048-0.094] unit increase	NR [7784415] (imputed)	N
1160	chr14	75374898	75374899	rs17102884	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	14q24.3	intergenic	rs17102884-T	0.31299	4E-11		6.598	z score decrease	Illumina [18485882] (imputed)	N
1160	chr14	75377351	75377352	rs8014289	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q24.3	RPS6KL1	rs8014289-A	0.437716	6E-15		0.0150509	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1160	chr14	75377554	75377555	rs2003490	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q24.3	RPS6KL1, DLST	rs2003490-?		2E-8				NR [6786993] (imputed)	N
1160	chr14	75378184	75378185	rs3213716	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs3213716-A	NR	3E-10		0.01546	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
1160	chr14	75378184	75378185	rs3213716	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs3213716-A	NR	3E-9		5.916	z score increase	Affymetrix [10847151] (imputed)	N
1160	chr14	75380111	75380112	rs189327530	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	14q24.3	NR	rs189327530-C		8E-6		0.4771	[0.26-0.69] SD units increase	NR [10700000] (imputed)	N
1160	chr14	75382681	75382682	rs722685	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	14q24.3	NR	rs722685-T	NR	1E-8		5.721	z score increase	Affymetrix [10847151] (imputed)	N
1160	chr14	75402013	75402014	rs10148864	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q24.3	NR	rs10148864-?	NR	7E-6		0.0078352	[0.0044-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1160	chr14	75402377	75402378	rs880949	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	14q24.3	PGF	rs880949-G	0.58	3E-9		0.17	unit decrease	Illumina [5270624] (imputed)	N
1160	chr14	75404438	75404439	rs11845259	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q24.3		rs11845259-G	0.4	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr14	75404438	75404439	rs11845259	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q24.3	NR	rs11845259-G	0.4045	5E-10				NR [9056863] (imputed)	N
1160	chr14	75426249	75426250	rs11850328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q24.3	NR	rs11850328-A	NR	1E-9		0.0148	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1160	chr14	75429592	75429593	rs10162358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q24.3		rs10162358-G	NR	2E-19		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1160	chr14	75437071	75437072	rs12880739	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q24.3		rs12880739-A	0.48	4E-14		7.55	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr14	75441794	75441795	rs4903273	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q24.3	PGF, EIF2B2	rs4903273-A	0.51	4E-15		7.85	z-score increase	Affymetrix [4311822] (imputed)	N
1160	chr14	75443102	75443103	rs2012627	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	14q24.3	NR	rs2012627-G	0.46	5E-11		0.03	[0.02-0.04] unit decrease	NR [9704453]	N
1160	chr14	75443102	75443103	rs2012627	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	14q24.3	NR	rs2012627-G	0.46	4E-9		0.02	[0.012-0.028] unit decrease	NR [9704453]	N
1160	chr14	75446777	75446778	rs12882664	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	14q24.3	EIF2B2	rs12882664-C	0.475995	1E-10		0.97226536	NR	Affymetrix [~ 9600000] (imputed)	N
1160	chr14	75446878	75446879	rs10131894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q24.3		rs10131894-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1160	chr14	75446878	75446879	rs10131894	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q24.3	intergenic	rs10131894-C	0.453	4E-9		0.038	[0.024-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
1160	chr14	75469554	75469555	rs175040	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	14q24.3	EIF2B2	rs175040-?	NR	1E-12		0.0364734	[0.026-0.047] unit decrease	Illumina [4804024] (imputed)	N
1161	chr14	75524838	75524839	rs175510	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Placenta growth factor levels	21,758 European ancestry individuals	9,173 individuals	14q24.3		rs175510-A	0.46	1E-42		0.1123	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1161	chr14	75529359	75529362	rs572568967	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.3		rs572568967-?	NR	8E-19		0.0183733	[0.014-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1161	chr14	75537380	75537381	rs11546525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q24.3		rs11546525-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1161	chr14	75556370	75556371	rs175484	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q24.3	PGF	rs175484-T	0.5709375	4E-7	(PGF, 3078_1_2)	0.12642442	[0.078-0.175] unit decrease	Illumina [> 1000000] (imputed)	N
1161	chr14	75574086	75574087	rs10146482	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q24.3		rs10146482-T	0.4795	4E-9		0.13347071	[0.09-0.177] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1161	chr14	75574086	75574087	rs10146482	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q24.3		rs10146482-T	0.4796	4E-8		0.082782775	[0.052-0.114] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1161	chr14	75583267	75583268	rs7145159	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	14q24.3	NEK9	rs7145159-T	0.5234	4E-10		0.0319	[0.022-0.042] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1161	chr14	75583267	75583268	rs7145159	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	14q24.3	NEK9	rs7145159-T	0.522	4E-10		0.0348	[0.024-0.046] unit decrease	NR [8041861] (imputed)	N
1161	chr14	75593151	75593152	rs12887934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q24.3		rs12887934-T	NR	2E-9		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1161	chr14	75599154	75599155	rs13099	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	14q24.3	NR	rs13099-A		7E-6				Illumina [458865]	N
1161	chr14	75602833	75602834	rs876403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.3		rs876403-?	NR	4E-15		0.0158684	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1161	chr14	75619117	75619118	rs2098297	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	14q24.3	TMED10	rs2098297-G	0.51	4E-8		1.04	[1.02-1.07]	Illumina [5167567] (imputed)	N
1161	chr14	75624133	75624134	rs175426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs175426-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1161	chr14	75626041	75626042	rs910316	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	14q24.3	TMED10	rs910316-?	0.15	1E-7		0.05	[0.03-0.07] s.d. increase	Illumina [229216]	N
1162	chr14	75670210	75670211	rs7147775	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q24.3	TMED10	rs7147775-T	0.519161	2E-20		0.0172831	[0.014-0.021] unit increase	NR [13737936] (imputed)	N
1162	chr14	75670210	75670211	rs7147775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q24.3		rs7147775-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1162	chr14	75701220	75701221	rs4899554	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q24.3	FOS, MLH3	rs4899554-C	0.819	3E-8		1.083	[1.042-1.125]	Affymetrix, Illumina [1230000] (imputed)	N
1162	chr14	75737908	75737909	rs8021531	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q24.3	NR	rs8021531-?	NR	7E-8		0.12634	[0.08-0.172] unit decrease	Affymetrix [7794483] (imputed)	N
1162	chr14	75741750	75741751	rs1569328	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	14q24.3	FOS, RP11-293M10.1	rs1569328-?		1E-7				Illumina [9560910] (imputed)	N
1162	chr14	75741750	75741751	rs1569328	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	14q24.3	FOS	rs1569328-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
1162	chr14	75741750	75741751	rs1569328	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q24.3	NR	rs1569328-G	0.83	3E-9	(EA)	1.0843407		Affymetrix, Illumina [~ 9000000] (imputed)	N
1162	chr14	75741750	75741751	rs1569328	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q24.3	NR	rs1569328-G	0.83	6E-11	(EA)	1.1154022	[1.08-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1163	chr14	75765670	75765671	rs115319209	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	14q24.3	LOC731223	rs115319209-G	0.969	2E-7	(AA)			Illumina [NR] (imputed)	N
1163	chr14	75784721	75784722	rs56225285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q24.3	NR	rs56225285-G	NR	2E-13		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1163	chr14	75784721	75784722	rs56225285	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q24.3	LINC01220	rs56225285-A	0.70363	7E-20		0.0185665	[0.015-0.023] unit decrease	NR [13737936] (imputed)	N
1163	chr14	75784721	75784722	rs56225285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q24.3		rs56225285-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1163	chr14	75787010	75787011	rs75663481	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q24.3	LINC01220	rs75663481-A	0.711144	3E-24		0.0025352	[0.002-0.0031] unit decrease	Affymetrix [13995440] (imputed)	N
1163	chr14	75787010	75787011	rs75663481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q24.3		rs75663481-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1163	chr14	75787010	75787011	rs75663481	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q24.3		rs75663481-?	NR	7E-22		0.0224875	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1163	chr14	75792277	75792278	rs11625566	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	14q24.3		rs11625566-?	NR	2E-6		4.72	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1163	chr14	75792277	75792278	rs11625566	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	14q24.3		rs11625566-?	NR	2E-6		4.71	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1163	chr14	75807761	75807762	rs72721631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q24.3		rs72721631-A	0.238059	2E-16		0.021573503	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1163	chr14	75807761	75807762	rs72721631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q24.3		rs72721631-A	0.238058	1E-16		0.021703953	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1163	chr14	75807761	75807762	rs72721631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs72721631-A	0.227723	8E-13				Affymetrix, Illumina [19905671] (imputed)	N
1163	chr14	75807761	75807762	rs72721631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q24.3	NR	rs72721631-A	0.237093	2E-15		0.019316	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1163	chr14	75814027	75814028	rs11621969	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	14q24.3	FOS, JDP2	rs11621969-T	0.789	9E-7	(A. actino)	2.46	[1.68-3.62]	Affymetrix [~ 2500000] (imputed)	N
1163	chr14	75825149	75825150	rs11624585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q24.3		rs11624585-A	NR	4E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1163	chr14	75827840	75827841	rs4903311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q24.3		rs4903311-T	0.620502	6E-12		0.015842019	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1163	chr14	75865250	75865251	rs12323387	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	14q24.3		rs12323387-?	NR	6E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1163	chr14	75865682	75865683	rs8008002	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs8008002-?	NR	8E-7	(MLM)	0.1891768	[0.11-0.26] unit decrease	Illumina [~ 9000000] (imputed)	N
1163	chr14	75866634	75866635	rs4903318	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs4903318-G	NR	4E-7	(GLM)	1.0842	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1163	chr14	75866634	75866635	rs4903318	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	14q24.3		rs4903318-G	NR	8E-6	(GLM)	2.9084	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1163	chr14	75884387	75884388	rs10143115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q24.3		rs10143115-A	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1164	chr14	75906572	75906573	rs1125773	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.3	JDP2	rs1125773-A	0.48	6E-16		0.0153	[0.012-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1164	chr14	75909896	75909897	rs909223	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	14q24.3	JDP2	rs909223-G	0.444782	4E-9		0.0647101	[0.043-0.086] unit decrease	Affymetrix [7260263] (imputed)	N
1164	chr14	75916463	75916464	rs84044	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q24.3	JDP2	rs84044-A	0.175	7E-6	(GLU )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1164	chr14	75935175	75935176	rs61978940	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	14q24.3		rs61978940-?	NR	2E-9		1.12744	[1.09-1.17]	NR [685523]	N
1164	chr14	75935907	75935908	rs77100309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	14q24.3		rs77100309-A	NR	3E-8		0.103	[0.067-0.139] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1164	chr14	75935907	75935908	rs77100309	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	14q24.3	JDP2	rs77100309-A	0.070484	2E-8		1.098901	[1.06-1.12]	Affymetrix [7600000] (imputed)	N
1164	chr14	75937199	75937200	rs55818536	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	14q24.3	JDP2	rs55818536-C	0.057607	5E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1164	chr14	75960535	75960536	rs7155603	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	14q24.3	BATF	rs7155603-G	0.19	1E-7		1.16	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1164	chr14	75961510	75961511	rs4903324	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	14q24.3	JDP2, BATF	rs4903324-A	0.2	2E-7		1.08	[1.05-1.11]	Illumina [161311]	N
1164	chr14	75968607	75968608	rs9323612	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	14q24.3		rs9323612-A	0.669	5E-11				Affymetrix [10369434] (imputed)	N
1164	chr14	75968607	75968608	rs9323612	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	14q24.3		rs9323612-A	0.669	5E-15				Affymetrix [10369434] (imputed)	N
1164	chr14	75968607	75968608	rs9323612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q24.3		rs9323612-G	0.330951	2E-19		0.02119377	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr14	75968607	75968608	rs9323612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q24.3		rs9323612-G	0.330951	2E-33		0.028348424	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr14	75968607	75968608	rs9323612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs9323612-G	0.327512	1E-40				Affymetrix, Illumina [23472807] (imputed)	N
1164	chr14	75968607	75968608	rs9323612	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	14q24.3	JDP2, BATF	rs9323612-A	0.7	9E-9		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1164	chr14	75975647	75975648	rs175705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	14q24.3		rs175705-G	0.386251	4E-9		0.0267962	[0.018-0.036] unit increase	Illumina [13470073] (imputed)	N
1164	chr14	75975647	75975648	rs175705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q24.3		rs175705-G	NR	2E-52		0.0274	[0.024-0.031] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1164	chr14	75975647	75975648	rs175705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q24.3		rs175705-G	0.718864	1E-50		0.036896747	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr14	75975647	75975648	rs175705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q24.3		rs175705-G	0.718858	3E-58		0.03969469	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr14	75975647	75975648	rs175705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	14q24.3	NR	rs175705-C	0.612729	1E-9		0.030178	[0.02-0.04] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1164	chr14	75975647	75975648	rs175705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs175705-G	0.666686	3E-72				Affymetrix, Illumina [19872809] (imputed)	N
1164	chr14	75975647	75975648	rs175705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q24.3	NR	rs175705-G	0.718533	9E-67		0.03822	[0.034-0.043] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1164	chr14	75975647	75975648	rs175705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.3		rs175705-?	NR	8E-63				NR [~ 8900000] (imputed)	N
1164	chr14	75975647	75975648	rs175705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q24.3	intergenic	rs175705-G	0.7193	9E-17		0.0330537	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75975647	75975648	rs175705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	14q24.3	intergenic	rs175705-G	0.7193	3E-17		0.03372875	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75975647	75975648	rs175705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	14q24.3	intergenic	rs175705-G	0.7192	6E-19		0.03529421	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75975647	75975648	rs175705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	14q24.3	intergenic	rs175705-G	0.7192	4E-19		0.03555595	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75975647	75975648	rs175705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q24.3	intergenic	rs175705-G	0.7192	2E-18		0.03480881	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75978120	75978121	rs175707	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	14q24.3		rs175707-T	0.276	6E-21				Affymetrix [10369434] (imputed)	N
1164	chr14	75981855	75981856	rs175714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q24.3		rs175714-C	NR	2E-23		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1164	chr14	75981855	75981856	rs175714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q24.3	NR	rs175714-C	0.57749	5E-9		0.0131247975	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1164	chr14	75981855	75981856	rs175714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q24.3		rs175714-C	0.577522	1E-17		0.019214485	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1164	chr14	75981855	75981856	rs175714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q24.3	NR	rs175714-C	0.577477	9E-42		0.026141	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1164	chr14	75981855	75981856	rs175714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q24.3		rs175714-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1164	chr14	75981855	75981856	rs175714	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	14q24.3	intergenic	rs175714-C	0.579	3E-11		0.02436534	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1164	chr14	75990516	75990517	rs3784008	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.3	NR	rs3784008-?	NR	5E-7				Affymetrix [NR]	N
1164	chr14	76005556	76005557	rs2300603	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q24.3	BATF	rs2300603-A	NR	2E-8		1.11	[1.09-1.12]	Illumina [465434]	N
1164	chr14	76014297	76014298	rs34695601	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q24.3	BATF	rs34695601-T	NR	6E-13		1.0832	NR	Affymetrix, Illumina [8278136] (imputed)	N
1165	chr14	76022399	76022400	rs8021741	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	14q24.3	Intergenic	rs8021741-?	NR	2E-8		1.0946907		Illumina [~ 460000] (imputed)	N
1165	chr14	76023818	76023819	rs2359740	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q24.3	BATF, LOC102724153, FLVCR2	rs2359740-?	NR	1E-7	(EA)	0.1363	[0.074-0.199] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1165	chr14	76129590	76129591	rs724743	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	14q24.3	TTLL5	rs724743-A	0.94	1E-7		0.101	[0.064-0.138] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1166	chr14	76173859	76173860	rs1005224	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	14q24.3	TTLL5	rs1005224-?	NR	1E-7		1.2048	[1.11-1.3]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1166	chr14	76245905	76245906	rs72725608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	14q24.3		rs72725608-C	NR	1E-8		0.1569	[0.1-0.21] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1166	chr14	76245905	76245906	rs72725608	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	14q24.3	IFT43	rs72725608-C	0.044	1E-8		1.2	[1.13-1.27]	Affymetrix [84000000] (imputed)	N
1167	chr14	76411054	76411054	rs753819702	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q24.3	TTLL5	rs753819702-T	0.7672	8E-14		0.0168	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1168	chr14	76426722	76426723	rs3917211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs3917211-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1168	chr14	76444684	76444685	rs3917155	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	14q24.3	TGFB3	rs3917155-G	0.948	2E-10	(AA)	0.103	[0.072-0.134] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1168	chr14	76444684	76444685	rs3917155	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	14q24.3	TGFB3	rs3917155-G	0.95	2E-7	(AA)	0.104	[0.065-0.143] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1168	chr14	76500302	76500303	rs9323624	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	14q24.3	IFT43	rs9323624-A	0.6436	1E-6	(East Asian)	2.88	[1.84-4.51]	Affymetrix [up to 644046]	N
1168	chr14	76500302	76500303	rs9323624	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	14q24.3	IFT43	rs9323624-?		1E-6				Affymetrix [up to 644046]	N
1168	chr14	76516541	76516542	rs117358046	31085060	Gisbert L	2019-05-10	Eur Neuropsychopharmacol	Genome-wide analysis of emotional lability in adult attention deficit hyperactivity disorder (ADHD).	Emotional lability in attention deficit hyperactivity disorder	563 European ancestry individuals	NA	14q24.3	IFT43	rs117358046-T	NR	4E-6		4.65	[2.42-8.94]	Illumina [2777520] (imputed)	N
1169	chr14	76549376	76549377	rs7161722	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q24.3	C14orf118	rs7161722-?	NR	8E-6	(TAG 54:9)	0.16073877	[0.09-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
1169	chr14	76585870	76585871	rs11624297	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	14q24.3	GPATCH2L	rs11624297-G	0.428	3E-6		0.72	[0.63-0.83]	Affymetrix [7435577] (imputed)	N
1169	chr14	76592963	76592964	rs1009908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.3		rs1009908-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1169	chr14	76593853	76593854	rs7153959	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q24.3	NR	rs7153959-?	NR	9E-33				Affymetrix [NR]	N
1169	chr14	76606405	76606406	rs2543369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q24.3		rs2543369-C	NR	9E-11		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1169	chr14	76606405	76606406	rs2543369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q24.3		rs2543369-C	NR	9E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1169	chr14	76613677	76613678	rs935334	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	14q24.3	intergenic	rs935334-?	NR	3E-6	(DBP)			Affymetrix [70897]	N
1169	chr14	76618340	76618341	rs2289833	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q24.3	GPATCH2L	rs2289833-A		7E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1169	chr14	76624546	76624547	rs8020977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q24.3	GPATCH2L	rs8020977-G	0.529874	1E-9		0.013393232	[0.0091-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1169	chr14	76624546	76624547	rs8020977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q24.3	GPATCH2L	rs8020977-G	0.529856	2E-13		0.01633581	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1169	chr14	76624546	76624547	rs8020977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q24.3	GPATCH2L	rs8020977-G	0.529879	2E-12		0.015637128	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1169	chr14	76624546	76624547	rs8020977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q24.3	NR	rs8020977-G	0.528915	1E-11		0.012513	[0.0089-0.0161] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1169	chr14	76624546	76624547	rs8020977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.3		rs8020977-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1169	chr14	76650763	76650764	rs2121070	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	14q24.3	C14orf118	rs2121070-?	NR	5E-6	(DBP)			Affymetrix [70897]	N
1170	chr14	76689987	76689988	rs80235011	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q24.3	Intergenic	rs80235011-?		4E-6		1.08	[1.05-1.12]	Illumina [7645193] (imputed)	N
1170	chr14	76689987	76689988	rs80235011	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q24.3	Intergenic	rs80235011-?		4E-6		2.0	[1.49-2.69]	Illumina [7645193] (imputed)	N
1170	chr14	76703350	76703351	rs7156960	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	14q24.3	C14orf118	rs7156960-G	0.48	4E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1170	chr14	76703350	76703351	rs7156960	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	14q24.3	C14orf118	rs7156960-C	0.53	3E-6		1.2195122	[1.12-1.33]	Affymetrix [355750]	N
1170	chr14	76703350	76703351	rs7156960	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	14q24.3	C14orf118	rs7156960-C	0.52	1E-6	(ETV6-RUNX1 positive)	1.2048193	[1.09-1.33]	Affymetrix [355750]	N
1170	chr14	76709906	76709907	rs74977054	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q24.3	NR	rs74977054-?	NR	3E-9				Illumina [7760689] (imputed)	N
1171	chr14	76812490	76812491	rs2360997	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	14q24.3	intergenic	rs2360997-C	0.86	8E-6	(maternal warmth)	1.3	[NR] unit decrease	Perlegen [429981]	N
1171	chr14	76812694	76812695	rs12893597	25729143	Ahmetov I	2014-10-21	Biol Sport	Genome-wide association study identifies three novel genetic markers associated with elite endurance performance.	Maximal oxygen uptake response	15 Russian ancestry male long endurance athletes, 17 Russian ancestry female long endurance athletes, 31 Russian ancestry middle and short endurance athletes, 17 Russian ancestry middle and short endurance athletes	NA	14q24.3	ESRRB	rs12893597-T	NR	7E-6	(MLE, MMSE, FMSE)			Illumina [1140419]	N
1171	chr14	76815457	76815458	rs113462353	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs113462353-T	0.01742	2E-8	(ME1)	0.1129	NR unit decrease	Illumina [1671387] (imputed)	N
1171	chr14	76835634	76835635	rs201369005	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	14q24.3	Intergenic	rs201369005-G	0.051	9E-6		1.155	[NR]	Illumina [9112387] (imputed)	N
1172	chr14	76956706	76956707	rs12880920	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Sphingomyelin 24:0 levels	1,937 individuals	NA	14q24.3	ESRRB	rs12880920-A	0.182	6E-7		0.2452	[0.15-0.34] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1172	chr14	76983729	76983730	rs12437118	30287856	Zheng R	2018-10-04	Nat Commun	Genome-wide association study identifies two risk loci for tuberculosis in Han Chinese.	Tuberculosis	833 Han Chinese ancestry cases, 1,220 Han Chinese ancestry controls	2,116 Han Chinese ancestry cases, 3,870 Han Chinese ancestry controls	14q24.3	ESRRB	rs12437118-A	0.261	2E-11		1.277	[1.189-1.371]	Affymetrix [5374021] (imputed)	N
1172	chr14	77009233	77009234	rs150469170	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	14q24.3	NR	rs150469170-?	NR	1E-6		0.3413	[0.2-0.48] unit increase	Illumina [at least 560000] (imputed)	N
1173	chr14	77085229	77085230	rs72733628	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	14q24.3		rs72733628-?	NR	3E-7				Illumina [7401356] (imputed)	N
1173	chr14	77085229	77085230	rs72733628	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	14q24.3		rs72733628-?	NR	1E-6				Illumina [7401356] (imputed)	N
1173	chr14	77151067	77151068	rs7149321	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC008050.1	rs7149321-?	NR	4E-8	(female)	1.57972	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1174	chr14	77292092	77292093	rs7152947	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks)	98 European ancestry cases and controls	NA	14q24.3	intergenic	rs7152947-A	0.89	3E-6	(HAM-A)	5.88		Illumina [266820] (imputed)	N
1174	chr14	77293519	77293520	rs8020289	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (remitters vs non-remitters after 12 weeks)	98 European ancestry cases and controls	NA	14q24.3	C14orf166B	rs8020289-G	0.88	9E-6	(HAM-A)	5.26		Illumina [266820] (imputed)	N
1174	chr14	77300862	77300863	rs2056857	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q24.3	NR	rs2056857-C	0.5944	3E-8		0.0261	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1174	chr14	77300862	77300863	rs2056857	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q24.3	NR	rs2056857-C	0.5888	5E-11		0.0256	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1175	chr14	77375690	77375691	rs17105012	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	14q24.3		rs17105012-A	0.316946766	2E-8		1.0520282	[1.033701575-1.070679656]	Illumina [8919992] (imputed)	N
1175	chr14	77375690	77375691	rs17105012	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	14q24.3		rs17105012-?	0.2966	9E-9		1.0407834	[1.02670221020576-1.05505762111073]	Illumina [8919992] (imputed)	N
1175	chr14	77382502	77382503	rs58524310	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	14q24.3	LRRC74A	rs58524310-G	0.327	8E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1175	chr14	77403425	77403426	rs2056859	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	14q24.3	C14orf166B, IRF2BPL	rs2056859-?	NR	2E-6		11.03	unit increase (EA, Dutch cohort)	Illumina [610255]	N
1175	chr14	77426524	77426525	rs10873298	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	14q24.3	IRF2BPL	rs10873298-C	0.366	7E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1175	chr14	77426710	77426711	rs10873299	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q24.3	LRRC74, IRF2BPL	rs10873299-A	0.38	1E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1175	chr14	77427468	77427469	rs8181996	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	14q24.3	LRRC74, IRF2BPL	rs8181996-G	0.38	2E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1175	chr14	77428156	77428157	rs74922662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q24.3		rs74922662-A	NR	1E-8		0.0342	[0.022-0.046] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1175	chr14	77428156	77428157	rs74922662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q24.3	NR	rs74922662-A	NR	4E-9		0.035	[0.023-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1175	chr14	77437367	77437368	rs78898020	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs78898020-G	0.01916	2E-8	(PHYH)	0.02647	NR unit increase	Illumina [1671387] (imputed)	N
1176	chr14	77471578	77471579	rs9323635	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.3	NR	rs9323635-T	0.979	1E-6	(EA)	0.1122	[0.067-0.157] unit decrease	Illumina [~ 11800000] (imputed)	N
1176	chr14	77484708	77484709	rs61991614	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	14q24.3	NR	rs61991614-A	NR	2E-8		0.01517	[0.0098-0.0205] unit decrease	Affymetrix [10847151] (imputed)	N
1176	chr14	77490668	77490669	rs17105180	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	14q24.3	NR	rs17105180-A	0.064	6E-7		2.528	[1.53-3.52] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1176	chr14	77497665	77497666	rs6574349	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	14q24.3	IRF2BPL	rs6574349-A	0.31984	5E-10		6.21	z score decrease	NR [10847151] (imputed)	N
1176	chr14	77497974	77497975	rs183266	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	14q24.3	IRF2BPL	rs183266-?	NR	5E-6	(LTG)			Illumina [NR]	N
1176	chr14	77502545	77502546	rs7155595	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	14q24.3		rs7155595-A	0.674	3E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1176	chr14	77502545	77502546	rs7155595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	14q24.3		rs7155595-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1176	chr14	77503442	77503443	rs12431415	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q24.3	NR	rs12431415-G	NR	2E-8		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1176	chr14	77508276	77508277	rs35749957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q24.3		rs35749957-C	NR	5E-11		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1176	chr14	77509871	77509872	rs11159247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q24.3		rs11159247-A	NR	1E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1176	chr14	77509871	77509872	rs11159247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q24.3		rs11159247-A	NR	8E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1176	chr14	77509871	77509872	rs11159247	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q24.3	IRF2BPL, CIPC	rs11159247-G	0.69	3E-9		5.91	z-score increase	Affymetrix [4314223] (imputed)	N
1176	chr14	77513172	77513173	rs55715661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q24.3		rs55715661-T	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1176	chr14	77513843	77513844	rs1986116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q24.3	Intergenic	rs1986116-T	0.2404	3E-8	(MTAG)	0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1176	chr14	77513843	77513844	rs1986116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q24.3	Intergenic	rs1986116-T	0.2404	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1176	chr14	77513843	77513844	rs1986116	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	14q24.3	AC007686.1	rs1986116-T	0.24	1E-6		0.16	[0.10-0.22] unit increase	Illumina [2380486] (imputed)	N
1176	chr14	77517147	77517148	rs11622562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q24.3		rs11622562-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1176	chr14	77517147	77517148	rs11622562	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q24.3	BC038792	rs11622562-T	0.3202	6E-10		0.1756	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1176	chr14	77517785	77517786	rs75004998	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q24.3	IRF2BPL, CIPC	rs75004998-G	0.66	3E-8		5.56	z-score increase	Affymetrix [4312306] (imputed)	N
1176	chr14	77517893	77517894	rs205810	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q24.3	IRF2BPL	rs205810-?	NR	1E-8		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [21347608] (imputed)	N
1176	chr14	77517893	77517894	rs205810	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q24.3	IRF2BPL	rs205810-?	NR	4E-10		0.0026	[0.0016-0.0036] unit decrease	Affymetrix [21347608] (imputed)	N
1176	chr14	77518203	77518204	rs61991652	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q24.3		rs61991652-C	0.74	8E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1176	chr14	77518301	77518302	rs17105232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	14q24.3		rs17105232-G	0.752225	3E-10		0.0301066	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1176	chr14	77518301	77518302	rs17105232	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q24.3	NR	rs17105232-G	0.751341	6E-10		0.013971	[0.0095-0.0184] unit decrease	NR [NR]	N
1176	chr14	77529374	77529375	rs1811739	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q24.3	NR	rs1811739-A	0.248	2E-13		0.00922828	[0.0068-0.0117] unit increase	NR [9732723] (imputed)	N
1176	chr14	77529374	77529375	rs1811739	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q24.3	NR	rs1811739-A	0.248	6E-10		0.018271778	[0.012-0.024] unit increase	NR [~ 10000000] (imputed)	N
1176	chr14	77529782	77529783	rs17105272	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q24.3	NA	rs17105272-T	0.3189	2E-10		0.0117	[0.0082-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1176	chr14	77578366	77578367	rs2655995	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	14q24.3	CIPC	rs2655995-G	0.72	4E-6		0.85	[0.5-1.2] g/day increase	Affymetrix [10353649] (imputed)	N
1176	chr14	77583601	77583602	rs77001965	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	14q24.3	NR	rs77001965-?	NR	4E-6		10669.248	NR unit decrease	Illumina [2379855]	N
1177	chr14	77601818	77601819	rs1465330	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	14q24.3	ZDHHC22	rs1465330-?	NR	4E-7		1.1905	[1.1-1.28]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1177	chr14	77609297	77609298	rs12889974	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	14q24.3	ZDHHC22, TMEM63C	rs12889974-G	0.08	4E-6		0.05	[0.028-0.072] unit increase	Illumina [7358575] (imputed)	N
1177	chr14	77615440	77615441	rs12895462	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	14q24.3	ZDHHC22	rs12895462-T	0.8044	5E-8		0.013805939	[0.0088-0.0188] unit increase	Affymetrix [11514654] (imputed)	N
1177	chr14	77616321	77616322	rs74340145	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	14q24.3	ZDHHC22, TMEM63C	rs74340145-A	0.143	2E-6		0.08	[0.047-0.113] unit increase	Illumina [5299861] (imputed)	N
1177	chr14	77638209	77638210	rs560827183	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	14q24.3	RP11-463C8.4, TMEM63C	rs560827183-A	0.0022	1E-6		0.916	[0.55-1.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1177	chr14	77661041	77661042	rs4903557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q24.3	Intergenic	rs4903557-G	0.4338	2E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1177	chr14	77684669	77684670	rs4467006	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	14q24.3	intergenic	rs4467006-?	NR	7E-6	(NSM vs. Control)	1.593	[NR]	Affymetrix [703012]	N
1177	chr14	77684841	77684842	rs2287375	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	14q24.3	intergenic	rs2287375-?	NR	5E-6	(NSM vs. Control)	1.606	[NR]	Affymetrix [703012]	N
1177	chr14	77685378	77685379	rs4396457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q24.3	Intergenic	rs4396457-A	0.1562	1E-9	(MTAG)	0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1177	chr14	77685378	77685379	rs4396457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q24.3	Intergenic	rs4396457-A	0.1561	2E-9	(MTAG)	0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1177	chr14	77703963	77703964	rs67366981	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	14q24.3	TMEM63C	rs67366981-T	NR	9E-6		0.6535	unit decrease	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1178	chr14	77735792	77735793	rs10133981	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels in 22q.11.2 deletion syndrome	913 cases, 559 controls	NA	14q24.3		rs10133981-?	NR	5E-6				Affymetrix [3311160] (imputed)	N
1178	chr14	77749686	77749687	rs55922804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs55922804-T	0.0331	3E-9	(GSTZ1)	0.1353	NR unit increase	Illumina [1671387] (imputed)	N
1178	chr14	77750010	77750011	rs17105658	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs17105658-A	0.02439	5E-14	(GSTZ1)	0.1909	NR unit increase	Illumina [1671387] (imputed)	N
1178	chr14	77755461	77755462	rs142996120	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs142996120-?	NR	3E-6	(MLM)	0.702981	[0.41-1] unit increase	Illumina [~ 9000000] (imputed)	N
1178	chr14	77778850	77778851	rs8014716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q24.3		rs8014716-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1178	chr14	77798638	77798657	rs56884065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q24.3		rs56884065-A	NR	5E-9		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1178	chr14	77801469	77801470	rs74063328	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs74063328-A	0.01045	3E-8	(LRG1)	0.06414	NR unit increase	Illumina [1671387] (imputed)	N
1178	chr14	77845789	77845790	rs150125715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs150125715-A	0.01045	1E-8	(GSTZ1)	0.2366	NR unit increase	Illumina [1671387] (imputed)	N
1178	chr14	77847257	77847258	rs4903577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q24.3		rs4903577-T	NR	1E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1178	chr14	77848971	77848972	rs4899652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q24.3		rs4899652-G	NR	5E-13		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1178	chr14	77848971	77848972	rs4899652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs4899652-G	0.376514	2E-16				Affymetrix, Illumina [24649327] (imputed)	N
1178	chr14	77848986	77848986	rs113590793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q24.3	SAMD15	rs113590793-CCTCT	0.46015	1E-12		0.015825234	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1178	chr14	77848986	77848986	rs113590793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q24.3	SAMD15	rs113590793-CCTCT	0.460164	2E-14		0.017038872	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1178	chr14	77850977	77850978	rs4903580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q24.3	NR	rs4903580-T	0.456246	3E-18		0.016091	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1178	chr14	77850977	77850978	rs4903580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs4903580-T	0.409791	7E-16				Affymetrix, Illumina [23114412] (imputed)	N
1178	chr14	77850977	77850978	rs4903580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q24.3	NR	rs4903580-T	0.456084	1E-17		0.016519	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1178	chr14	77856183	77856184	rs12435136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q24.3		rs12435136-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1179	chr14	77858335	77858336	rs8018808	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	14q24.3	NOXRED1, SAMD15	rs8018808-G	0.4604	2E-11		0.02429424	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77862679	77862680	rs11361923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	14q24.3	NOXRED1	rs11361923-G	0.4525	2E-9		0.02156262	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77862679	77862680	rs11361923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	14q24.3	NOXRED1	rs11361923-G	0.4525	8E-12		0.02466417	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77862679	77862680	rs11361923	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	14q24.3	NOXRED1	rs11361923-G	0.4524	2E-12		0.02539337	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77895637	77895638	rs11624682	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q24.3		rs11624682-?	NR	9E-6	(MLM)	0.4273234	[0.24-0.62] unit increase	Illumina [~ 9000000] (imputed)	N
1179	chr14	77903847	77903848	rs117555229	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs117555229-A	0.01045	1E-8	(GSTZ1)	0.2366	NR unit increase	Illumina [1671387] (imputed)	N
1179	chr14	77921119	77921120	rs11159261	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q24.3	VIPAS39	rs11159261-T	0.466268	3E-9		0.0117711	[0.0079-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
1179	chr14	77939964	77939965	rs11620921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q24.3		rs11620921-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1179	chr14	77961608	77961609	rs11625487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	14q24.3	ISM2	rs11625487-C	0.8143	2E-12		0.03252267	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77961608	77961609	rs11625487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	14q24.3	ISM2	rs11625487-C	0.8143	5E-9		0.02678818	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1179	chr14	77961608	77961609	rs11625487	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	14q24.3	ISM2	rs11625487-C	0.8143	3E-12		0.0320822	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1180	chr14	78008690	78008691	rs56327799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs56327799-A	0.02265	2E-8	(HAL)	0.2001	NR unit increase	Illumina [1671387] (imputed)	N
1180	chr14	78028377	78028378	rs4903604	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	14q24.3	NR	rs4903604-?		3E-7	(genus_Fusobacterium)	0.9080629	[0.59-1.23] unit decrease	Affymetrix [211319]	N
1180	chr14	78033218	78033220	rs34750410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3	SPTLC2	rs34750410-G	0.51864	3E-12		0.015681138	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr14	78038194	78038195	rs35779417	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q24.3	SPTLC2	rs35779417-A	0.00937588081634935	1E-6	(F_Desulfovibrionaceae_HB)	1.41191	[0.84-1.98] unit decrease	Illumina [7711310] (imputed)	N
1180	chr14	78109343	78109344	rs12434701	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q24.3	NR	rs12434701-C	0.777493	6E-23		0.022262	[0.018-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1180	chr14	78109343	78109344	rs12434701	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs12434701-C	NR	1E-6	(GLM)	1.3434	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1180	chr14	78112044	78112045	rs58312042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q24.3		rs58312042-T	0.223624	5E-23		0.026352286	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr14	78112044	78112045	rs58312042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q24.3	NR	rs58312042-A	0.782225	1E-20				Affymetrix, Illumina [22063850] (imputed)	N
1180	chr14	78112044	78112045	rs58312042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q24.3		rs58312042-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q24.3	intergenic	rs59721556-A	0.2235	3E-9		0.02511692	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs59721556-?	NR	1E-7	(MLM)	0.2615917	[0.16-0.36] unit increase	Illumina [~ 9000000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	14q24.3		rs59721556-?	NR	4E-6	(MLM)	0.2285079	[0.13-0.33] unit increase	Illumina [~ 9000000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	14q24.3		rs59721556-?	NR	2E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q24.3		rs59721556-G	NR	2E-6	(GLM)	0.2371	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1180	chr14	78112392	78112393	rs59721556	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q24.3		rs59721556-?	NR	3E-7	(MLM)	0.2564292	[0.16-0.35] unit increase	Illumina [~ 9000000] (imputed)	N
1180	chr14	78114475	78114476	rs11620917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q24.3		rs11620917-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1181	chr14	78158075	78158076	rs118129757	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs118129757-C	0.0122	2E-8	(ORM2)	0.1582	NR unit increase	Illumina [1671387] (imputed)	N
1181	chr14	78233344	78233345	rs138529210	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	14q24.3	NR	rs138529210-?	NR	5E-6		0.1883	[0.11-0.27] unit increase	Illumina [at least 560000] (imputed)	N
1182	chr14	78284035	78284036	rs2364841	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	14q24.3	ADCK1	rs2364841-?		8E-7	(female)	0.322	[0.19-0.45] unit increase	NR [~ 5500000] (imputed)	N
1182	chr14	78299643	78299644	rs6574405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q24.3		rs6574405-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1182	chr14	78369284	78369285	rs74065827	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs74065827-?	NR	1E-7	(MLM)	0.3707302	[0.24-0.51] unit increase	Illumina [~ 9000000] (imputed)	N
1182	chr14	78369284	78369285	rs74065827	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	14q24.3		rs74065827-?	NR	7E-7	(MLM)			Illumina [~ 9000000] (imputed)	N
1182	chr14	78371402	78371403	rs56240334	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	14q24.3		rs56240334-A	NR	2E-7	(GLM)	2.0543	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1182	chr14	78371402	78371403	rs56240334	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	14q24.3		rs56240334-A	NR	9E-7	(GLM)	5.936	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1182	chr14	78371402	78371403	rs56240334	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q24.3		rs56240334-A	NR	8E-8	(GLM)	0.3808	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1182	chr14	78372500	78372501	rs61990749	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	14q24.3	NR	rs61990749-G		1E-6		0.1116	[0.067-0.156] SD units decrease	NR [10700000] (imputed)	N
1182	chr14	78374171	78374172	rs34272020	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	14q24.3		rs34272020-?	NR	3E-7	(MLM)	0.3507382	[0.22-0.48] unit increase	Illumina [~ 9000000] (imputed)	N
1182	chr14	78379155	78379156	rs17106604	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	14q24.3	NR	rs17106604-C		6E-7		0.1129	[0.069-0.157] SD units decrease	NR [10700000] (imputed)	N
1182	chr14	78379683	78379684	rs1549118	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q24.3	ADCK1	rs1549118-T	0.28	5E-8		0.2003	[0.13-0.27] unit increase	Affymetrix [19941912] (imputed)	N
1182	chr14	78380532	78380533	rs56374507	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q24.3		rs56374507-?	NR	3E-8	(MLM)	0.3768625	[0.24-0.51] unit increase	Illumina [~ 9000000] (imputed)	N
1183	chr14	78421057	78421058	rs4899685	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	14q24.3	ADCK1	rs4899685-?		4E-6	(Hispanic)	14.0	[NR]	Illumina [936149]	N
1183	chr14	78424782	78424783	rs12879819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q24.3		rs12879819-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1183	chr14	78476020	78476021	rs4903685	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	14q24.3	NR	rs4903685-G	0.274613	8E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1183	chr14	78495760	78495761	rs11621908	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	14q24.3	NR	rs11621908-C	NR	3E-8		1.266	unit increase	Affymetrix [14661600] (imputed)	N
1183	chr14	78495760	78495761	rs11621908	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	14q24.3		rs11621908-T	0.07962	5E-9		0.0266	[0.018-0.036] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1184	chr14	78527913	78527914	rs60311435	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q24.3	NR	rs60311435-C	0.803176	4E-6		1.0672358	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1184	chr14	78534905	78534906	rs3850370	22872573	Hu L	2012-08-07	Clin Cancer Res	Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.	Response to platinum-based chemotherapy in non-small-cell lung cancer	528 Han Chinese ancestry cases	340 Han Chinese ancestry cases, 409 European ancestry cases	14q24.3	NRXN3, SKIIP, SNW1, ALKBH1	rs3850370-C	NR	4E-6	(Han Chinese + EA)	1.31	[1.17-1.47]	NR [576351]	N
1184	chr14	78538805	78538806	rs177206	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	14q24.3		rs177206-C	0.466	3E-6		1.6		Illumina [5411261] (imputed)	N
1184	chr14	78548206	78548207	rs74735254	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	14q24.3	ADCK1	rs74735254-A	0.116	8E-6		0.042	[0.024-0.06] unit decrease	Illumina [7358575] (imputed)	N
1184	chr14	78555940	78555941	rs4903705	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	14q24.3	NRXN3	rs4903705-T	0.163	1E-6		0.222	[NR] unit increase	Illumina [625127]	N
1184	chr14	78556463	78556464	rs809	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment in bipolar disorder	323 European ancestry responder cases, 853 European ancestry non-responder cases	NA	14q24.3	NRXN3	rs809-T	0.47	4E-6		1.64	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1184	chr14	78580716	78580717	rs11627061	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	14q24.3	Intergenic	rs11627061-?	NR	4E-6		2.19	[NR]	Affymetrix [492217] (imputed)	N
1184	chr14	78594764	78594765	rs1950265	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q24.3	NR	rs1950265-A	0.442	5E-8		0.00592737	[0.0038-0.0081] unit decrease	NR [9732723] (imputed)	N
1184	chr14	78596120	78596121	rs446820	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs446820-T	0.09408	5E-9	(S100A11)	0.1853	NR unit increase	Illumina [1671387] (imputed)	N
1184	chr14	78596120	78596121	rs446820	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q24.3	NR	rs446820-T	0.09408	2E-8	(SERPINC1)	0.004997	NR unit increase	Illumina [1671387] (imputed)	N
1184	chr14	78609674	78609675	rs79413310	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	14q24.3	NRXN3	rs79413310-T	0.0118	5E-6		0.1663	[0.095-0.238] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1184	chr14	78609674	78609675	rs79413310	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	14q24.3	NRXN3	rs79413310-T	0.0118	4E-6		0.1681	[0.096-0.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1184	chr14	78625652	78625653	rs7144274	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q24.3		rs7144274-G	0.649	3E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1184	chr14	78640967	78640968	rs213563	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	14q24.3	NR	rs213563-A	0.3127	5E-6		0.1481	[0.085-0.211] unit increase	Illumina [10677593] (imputed)	N
1185	chr14	78646165	78646167	rs139584545	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	14q24.3	RNA5SP388	rs139584545-TTG	0.140138571	2E-6		0.222159	unit increase	Illumina [6969139] (imputed)	N
1185	chr14	78646765	78646766	rs213569	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	14q24.3	RBM23, PRMT5, HAUS4, C14orf93, SAMD4A	rs213569-?		4E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
1185	chr14	78691330	78691331	rs36182263	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	14q24.3	NR	rs36182263-G		8E-6		0.1273	[0.071-0.183] SD units decrease	NR [10700000] (imputed)	N
1185	chr14	78695067	78695068	rs10129666	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	14q24.3	NRXN3	rs10129666-?	NR	8E-6	(SCR Amplitude)	0.021	[0.011-0.031] unit increase	Illumina [527829]	N
1185	chr14	78750986	78750987	rs11159346	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	14q24.3	NRXN3	rs11159346-?	NR	5E-6	(EDA Factor scores)	0.108	[0.061-0.155] unit increase	Illumina [527829]	N
1185	chr14	78756080	78756081	rs112306229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	14q24.3		rs112306229-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1185	chr14	78773322	78773323	rs17107300	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression x maternal smoking during pregnancy interaction	2,310 cases, 4,539 controls	NA	14q24.3	NRXN3	rs17107300-?	NR	5E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
1186	chr14	78775305	78775306	rs7155434	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	14q24.3	KIAA0743	rs7155434-A	0.27	8E-6		3643.0	[NR] unit increase	Illumina [546314]	N
1186	chr14	78786076	78786077	rs11624704	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	14q24.3	NRXN3	rs11624704-?	0.0274	6E-6		10.44	[NR]	Affymetrix [559609]	N
1186	chr14	78786076	78786077	rs11624704	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	14q24.3	NRXN3	rs11624704-?	NR	3E-9	(WHR)			Illumina [~ 550000]	N
1186	chr14	78786158	78786159	rs6574433	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	14q24.3	AC007056.4-3	rs6574433-?	NR	6E-6	(Animals)			Illumina [up to 563855]	N
1186	chr14	78812182	78812183	rs17107396	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of deformation score)	3,186 European ancestry individuals	NA	14q24.3	NRXN3	rs17107396-?	NR	5E-6				Illumina [747780]	N
1186	chr14	78892141	78892142	rs17107548	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	14q24.3	NRXN3	rs17107548-?	NR	1E-6	(Hispanic/Latino)	6.6	[4.05-9.15] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1187	chr14	79013441	79013442	rs77377992	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q24.3	NR	rs77377992-G	0.9870104	3E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1188	chr14	79112218	79112219	rs11849937	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	14q24.3	NR	rs11849937-T	0.034	8E-7		1.80273	[NR]	NR [9372253] (imputed)	N
1188	chr14	79115181	79115182	rs72683573	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	14q24.3	NR	rs72683573-?	NR	3E-6		0.1131	[0.065-0.161] unit decrease	Illumina [at least 560000] (imputed)	N
1189	chr14	79209408	79209409	rs17835706	26865924	Lee M	2015-12-21	Nutr Res Pract	Genome-wide association study for the interaction between BMR and BMI in obese Korean women including overweight.	Body mass index	40 Korean ancestry low BMI individuals, 37 Korean ancestry high BMI individuals	NA	14q24.3	NRXN3	rs17835706-G	0.2	2E-6				Affymetrix [at least 710679] (imputed)	N
1189	chr14	79209738	79209739	rs112056657	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q24.3	NR	rs112056657-G	0.0103	2E-6	(EA)	0.1986	[0.12-0.28] unit decrease	Illumina [~ 11800000] (imputed)	N
1190	chr14	79412454	79412455	rs7144101	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	14q31.1	NRXN3	rs7144101-?	NR	8E-6				Affymetrix [753382]	N
1191	chr14	79448957	79448958	rs183288119	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	14q31.1		rs183288119-?	NR	3E-8		0.9029	[0.58-1.22] unit increase	Affymetrix [NR] (imputed)	N
1191	chr14	79452018	79452019	rs12436039	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q31.1	NRXN3	rs12436039-T	0.8801	3E-8		1.0337573		Affymetrix [11880941] (imputed)	N
1191	chr14	79495684	79495685	rs8009329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs8009329-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1191	chr14	79495684	79495685	rs8009329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q31.1		rs8009329-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1191	chr14	79516523	79516524	rs1995411	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,365 Icelandic ancestry individuals	NA	14q31.1		rs1995411-C	0.3368	3E-21		0.183082	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
1192	chr14	79563653	79563654	rs8005334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q31.1	NR	rs8005334-G	0.36	7E-13		0.00806048	[0.0059-0.0103] unit increase	NR [9732723] (imputed)	N
1192	chr14	79563653	79563654	rs8005334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q31.1	NR	rs8005334-G	0.36	3E-10		0.016673358	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1192	chr14	79570609	79570610	rs11623049	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.1	DIO2	rs11623049-?	NR	8E-6	(TAG 58:12)	0.27204436	[0.15-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr14	79572030	79572031	rs2370901	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q31.1	NRXN3	rs2370901-T	0.6540625	6E-14	(NRXN3, 5111_15_3)	0.18930838	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1192	chr14	79580217	79580218	rs34121288	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	14q31.1	NRXN3	rs34121288-T		5E-8		1.02	[NR]	Affymetrix [up to 79000000] (imputed)	N
1192	chr14	79602541	79602542	rs2370926	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	14q31.1	NRXN3	rs2370926-T		7E-10		0.0056	[0.0038-0.0074] unit increase	Affymetrix [13304133] (imputed)	N
1192	chr14	79618749	79618750	rs17594561	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q31.1		rs17594561-A	0.556	4E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
1192	chr14	79663898	79663898	rs564134655	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	14q31.1		rs564134655-?	NR	1E-8		0.482	[0.32-0.65] unit increase	Affymetrix [NR] (imputed)	N
1193	chr14	79709509	79709510	rs4899737	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.1	Intergenic	rs4899737-T	0.3093	3E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr14	79713596	79713597	rs12882688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q31.1	Intergenic	rs12882688-A	0.2965	5E-9	(MTAG)	0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1193	chr14	79718461	79718462	rs76191705	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	14q31.1	NRXN3	rs76191705-?	NR	2E-6		0.1863	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1193	chr14	79785698	79785699	rs2218786	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q31.1	NRXN3	rs2218786-?		6E-6				Illumina [4322238] (imputed)	N
1194	chr14	79830066	79830067	rs74811276	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	14q31.1	NR	rs74811276-G		6E-6		0.2152	[0.12-0.31] SD units decrease	NR [10700000] (imputed)	N
1194	chr14	79841685	79841686	rs35993073	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs35993073-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1194	chr14	79847237	79847238	rs12882679	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Underweight status	953 Bangladeshi ancestry underweight females, 1,269 Bangladeshi ancestry normal weight females, 1,146 Bangladeshi ancestry underweight males, 1,106 normal weight males	NA	14q31.1	NRXN3	rs12882679-G	0.687	1E-6		0.057	[0.033-0.081] unit increase	Illumina [1208102] (imputed)	N
1194	chr14	79863332	79863333	rs2167151	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Postherpetic neuralgia	89 Japanese ancestry cases, 282 Japanese ancestry controls	NA	14q31.1	NRXN3	rs2167151-?	NR	6E-6				Illumina [445723]	N
1194	chr14	79890676	79890677	rs2370982	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	14q31.1	NRXN3	rs2370982-T	0.2031	5E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1194	chr14	79894045	79894046	rs10136360	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	14q31.1	NRXN3	rs10136360-G	0.779217	2E-10	(EA)	0.00957388	[0.0066-0.0125] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q31.1		rs7141420-T	NR	4E-19		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q31.1		rs7141420-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q31.1	NA	rs7141420-T	0.5463	2E-37		0.0209	[0.018-0.024] unit increase	NR [~ 27400000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q31.1	NRXN3	rs7141420-T	0.52	7E-15		0.019	[0.015-0.023] unit increase	Illumina [6108953] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.533	4E-10		0.025	[0.017-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.5325	2E-10	(women)	0.0315	[0.022-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.5291	4E-9	(EA)	0.0246	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.5275	1E-8	(EA,women)	0.0306	[0.02-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-?	NR	5E-11	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-?	NR	3E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-?	NR	2E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-?	NR	2E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.533	2E-12		0.0248	[0.018-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.533	1E-11	(women)	0.0303	[0.021-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.5291	6E-10	(EA, women)	0.0297	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q31.1	NRXN3	rs7141420-T	0.5291	1E-10	(EA)	0.0241	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	3E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	1E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	4E-11		0.0237	[0.017-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	1E-8	(women)	0.0263	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	5E-12		0.022	[0.016-0.028] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q31.1	NRXN3	rs7141420-T	0.5299	3E-11	(women)	0.0278	[0.02-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q31.1	NR	rs7141420-T	0.523140564168958	1E-24		0.027489452	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1194	chr14	79899453	79899454	rs7141420	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q31.1	NRXN3	rs7141420-T	0.529	9E-15		0.023	[0.017-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1194	chr14	79899453	79899454	rs7141420	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q31.1	NRXN3	rs7141420-T	0.528	6E-8	(EA, men)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1194	chr14	79899453	79899454	rs7141420	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q31.1	NRXN3	rs7141420-T	0.527	1E-14	(EA)	0.024	[0.017-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1194	chr14	79899453	79899454	rs7141420	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q31.1	NRXN3	rs7141420-T	0.526	1E-11	(EA, women)	0.026	[0.019-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1194	chr14	79899453	79899454	rs7141420	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	14q31.1	NRXN3	rs7141420-T	0.52	1E-17	(Obesity class I)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1194	chr14	79903375	79903376	rs2370983	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	14q31.1	NRXN3	rs2370983-A	0.62	3E-9	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1194	chr14	79910118	79910119	rs17109221	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	14q31.1	NRXN3	rs17109221-T	0.2071	3E-9		0.0469	[0.031-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1194	chr14	79923666	79923667	rs1865719	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q31.1	NRXN3	rs1865719-A	0.367072	9E-14		0.0109005	[0.008-0.0138] unit decrease	Affymetrix [12370749]	N
1194	chr14	79930643	79930644	rs72690737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q31.1		rs72690737-?	NR	1E-32				NR [~ 8900000] (imputed)	N
1194	chr14	79932040	79932041	rs17836088	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q31.1	NRXN3	rs17836088-C	0.2171	7E-14		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1194	chr14	79932822	79932823	rs111908763	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q31.1	NR	rs111908763-T	0.193	2E-8		0.00934652	[0.0061-0.0126] unit decrease	NR [~ 9732723] (imputed)	N
1194	chr14	79936963	79936964	rs10150332	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	14q31.1	NR	rs10150332-?	NR	4E-7		0.03803425	[0.023-0.053] unit increase	Illumina [32062178] (imputed)	N
1194	chr14	79936963	79936964	rs10150332	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	14q31.1	NRXN3	rs10150332-C	0.21	3E-11		0.13	[0.07-0.19] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1194	chr14	79937215	79937216	rs8020365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q31.1		rs8020365-A	NR	1E-23		0.0252	[0.02-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1194	chr14	79939524	79939525	rs10145154	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q31.1	NR	rs10145154-C	0.7838	1E-22		0.0546	[0.044-0.066] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1194	chr14	79939524	79939525	rs10145154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs10145154-?	NR	2E-32				Affymetrix [~ 8270000] (imputed)	N
1194	chr14	79939992	79939993	rs17109256	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q31.1	NA	rs17109256-A	0.2324	2E-16		0.0169	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1194	chr14	79939992	79939993	rs17109256	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	14q31.1	NR	rs17109256-A	0.2324	2E-16		0.0169	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1194	chr14	79939992	79939993	rs17109256	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q31.1	NA	rs17109256-A	0.2335	1E-39		0.0261	[0.022-0.03] unit increase	NR [~ 27400000] (imputed)	N
1194	chr14	79939992	79939993	rs17109256	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs17109256-A	0.2193	9E-7	(EA, men)	0.0289	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79939992	79939993	rs17109256	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs17109256-A	0.2193	3E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q31.1	NA	rs7144011-T	0.2334	2E-40		0.0263	[0.022-0.03] unit increase	NR [~ 27400000] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q31.1	NR	rs7144011-G	NR	3E-20		0.029	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	14q31.1	NRXN3	rs7144011-T	0.221063370925376	2E-8		0.0482	[0.032-0.065] unit increase	NR [5035015] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs7144011-T	0.2191	9E-16	(EA)	0.033	[0.025-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs7144011-T	0.2191	7E-13	(EA, men)	0.0406	[0.029-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs7144011-T	0.2191	2E-7	(EA, women)	0.0277	[0.017-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs7144011-T	0.219	9E-13	(EA)	0.0304	[0.022-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79940382	79940383	rs7144011	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q31.1	NRXN3	rs7144011-T	0.219	2E-11	(EA, men)	0.0395	[0.028-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1194	chr14	79942646	79942647	rs7156625	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q31.1	NR	rs7156625-G	0.7662	5E-27		0.053	[0.043-0.063] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1194	chr14	79942646	79942647	rs7156625	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q31.1	NR	rs7156625-A	0.2224	2E-19		0.026865091	[0.021-0.033] unit increase	Affymetrix [10549349] (imputed)	N
1194	chr14	79943926	79943927	rs4899746	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs4899746-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
1194	chr14	79945161	79945162	rs10146997	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q31.1	NRXN3	rs10146997-A	0.778004	3E-22		0.0159997	[0.013-0.019] unit decrease	Affymetrix [12370749]	N
1194	chr14	79945161	79945162	rs10146997	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	14q31.1	NRXN3	rs10146997-G	0.21	2E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1194	chr14	79945161	79945162	rs10146997	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	14q31.1	NRXN3	rs10146997-G	NR	5E-8		0.65	[NR] cm increase	Affymetrix, Illumina [up to 512349]	N
1195	chr14	80002095	80002096	rs7147705	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis (age of onset)	4,243 European ancestry cases	NA	14q31.1	NRXN3	rs7147705-T	0.29	6E-6	(Meta)			Illumina [254145]	N
1195	chr14	80071185	80071186	rs139502972	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Syntrophomonadia abundance in stool	5,959 Finnish ancestry individuals	NA	14q31.1		rs139502972-A	0.0362712	4E-8		0.0408048	[0.026-0.055] unit decrease	Illumina [7980478] (imputed)	N
1195	chr14	80077681	80077682	rs56212745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs56212745-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1196	chr14	80102232	80102233	rs34940743	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	14q31.1	NRXN3	rs34940743-G	0.3467	3E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1196	chr14	80102232	80102233	rs34940743	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q31.1	NR	rs34940743-G	0.346	2E-11		0.00771934	[0.0055-0.01] unit increase	NR [9732723] (imputed)	N
1196	chr14	80102232	80102233	rs34940743	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q31.1	NR	rs34940743-G	0.346	3E-9	(Conditioned on chr14:79563654)	0.015924897	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1196	chr14	80173396	80173397	rs8011870	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q31.1	NRXN3	rs8011870-G	NR	3E-8		0.00772745	[0.005-0.0105] unit increase	Affymetrix [10061374] (imputed)	N
1196	chr14	80205540	80205541	rs117922293	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	14q31.1		rs117922293-?	NR	3E-7		0.04239	unit decrease	Illumina [at least 2500000] (imputed)	N
1197	chr14	80222030	80222031	rs79654683	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	14q31.1		rs79654683-?	NR	9E-7		0.04165	unit decrease	Illumina [at least 2500000] (imputed)	N
1197	chr14	80242505	80242506	rs117556367	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	14q31.1		rs117556367-?	NR	9E-7		0.04165	unit decrease	Illumina [at least 2500000] (imputed)	N
1197	chr14	80288665	80288666	rs8017057	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q31.1	NR	rs8017057-T	0.9	1E-10		0.0116593	[0.0081-0.0152] unit increase	NR [9732723] (imputed)	N
1197	chr14	80327081	80327082	rs2293847	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	14q31.1	NR	rs2293847-?	NR	4E-9	(ATP synthase subunit beta, mitochondrial)			Illumina [514227]	N
1197	chr14	80346532	80346533	rs12881175	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q31.1	NR	rs12881175-C	0.906	5E-7		0.0113529	[0.0069-0.0158] unit increase	NR [~ 9732723] (imputed)	N
1198	chr14	80355340	80355341	rs2205226	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	14q31.1	NRXN3, DIO2	rs2205226-?	NR	5E-6		4.956	unit increase (EA, Australian cohort)	Illumina [610255]	N
1198	chr14	80358261	80358262	rs4899753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	14q31.1		rs4899753-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1198	chr14	80361007	80361008	rs56112531	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q31.1	NRXN3	rs56112531-C	0.0505584302972149	2E-6	(G_Dialister_HB)	0.574569	[0.34-0.81] unit decrease	Illumina [7711310] (imputed)	N
1198	chr14	80362581	80362582	rs12892107	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	14q31.1	NR	rs12892107-?	NR	6E-6		1.1953834	[1.11-1.29]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1198	chr14	80366269	80366270	rs61990820	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q31.1	NRXN3	rs61990820-A	NR	4E-6	(East Asian)	1.114	[1.07-1.16]	Illumina [6627481] (imputed)	N
1198	chr14	80366269	80366270	rs61990820	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q31.1	intergenic	rs61990820-G	NR	7E-7	(Chinese)	1.133	[1.08-1.18]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1198	chr14	80410440	80410441	rs8010717	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	14q31.1	NRXN3, LOC730007	rs8010717-?	NR	3E-7	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
1198	chr14	80410440	80410441	rs8010717	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	14q31.1	NRXN3, LOC730007	rs8010717-?	NR	1E-7	(SBP,Smoking)			Affymetrix [2485435] (imputed)	N
1198	chr14	80410440	80410441	rs8010717	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	14q31.1	NRXN3, LOC730007	rs8010717-?	NR	1E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1198	chr14	80427731	80427732	rs1158314	29739359	Graham PS	2018-05-08	BMC Med Genet	Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy.	Proliferative diabetic retinopathy in type 2 diabetes	176 European ancestry cases, 435 European ancestry controls	NA	14q31.1	NRXN3	rs1158314-G	0.400	4E-6		2.16	[1.56-3.00]	Illumina [617130]	N
1198	chr14	80450934	80450935	rs178462	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	14q31.1	intergenic	rs178462-C	0.8266	2E-6		0.5551	[0.33-0.78] unit decrease	Illumina [at least 4683137] (imputed)	N
1198	chr14	80464508	80464509	rs1160549	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Figural/spatial cognitive ability	354 Saudi Arabian ancestry children	NA	14q31.1	NRXN3	rs1160549-?	NR	5E-6		6.88	[3.96-9.8] unit increase	Illumina [285340]	N
1199	chr14	80493254	80493255	rs77168490	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (recovery after exercise)	51,503 European ancestry individuals	NA	14q31.1	NRXN3	rs77168490-A	0.98	4E-8	(women)	0.17	[0.11-0.23] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1199	chr14	80509103	80509104	rs149851565	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	14q31.1	NRXN3, DIO2	rs149851565-C	NR	4E-9		0.175165	[0.12-0.23] unit decrease	Illumina [at least 950000] (imputed)	N
1199	chr14	80540935	80540936	rs12323429	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Clostridiales)	1,068 Japanese ancestry individuals	NA	14q31.1	intergenic	rs12323429-C	0.22	7E-6	(female)	0.0717	[0.041-0.103] unit increase	Illumina [6380737] (imputed)	N
1199	chr14	80563086	80563087	rs55730008	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	14q31.1	intergenic	rs55730008-C	0.1567	1E-6		0.5794	[0.35-0.81] unit increase	Illumina [at least 4683137] (imputed)	N
1199	chr14	80573860	80573861	rs56740597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q31.1	NR	rs56740597-T	0.08893	1E-10		0.0775121	[0.054-0.101] unit increase	Affymetrix [17914406] (imputed)	N
1199	chr14	80587140	80587141	rs10220309	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	14q31.1	NR	rs10220309-?		6E-6	(AA)			Illumina [up to 524000]	N
1200	chr14	80669579	80669580	rs225014	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	14q31.1	DIO2	rs225014-T	0.64	5E-17		0.047	[0.035-0.059] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1200	chr14	80704418	80704418	rs534767059	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q31.1	NR	rs534767059-TA	0.0899711	1E-8		0.0695026	[0.046-0.093] unit increase	Affymetrix [17914406] (imputed)	N
1201	chr14	80812362	80812363	rs116975924	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	14q31.1	NR	rs116975924-?		7E-6		35.0775	[19.89-50.27] unit decrease	NR [NR] (imputed)	N
1202	chr14	80872020	80872021	rs11846182	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	14q31.1	DIO2-AS1	rs11846182-T	0.6069	9E-6		1.362	[1.185-1.565]	Affymetrix [552090] (imputed)	N
1202	chr14	80878117	80878118	rs10142839	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	14q31.1	DIO2-AS1	rs10142839-A	NR	8E-7				Illumina [up to 3803121] (imputed)	N
1202	chr14	80957922	80957923	rs935728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q31.1		rs935728-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1203	chr14	81030492	81030493	rs10162376	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	14q31.1	CEP128	rs10162376-?	0.0	3E-8				Affymetrix [547296]	N
1203	chr14	81107360	81107361	rs141751376	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	CEP128	rs141751376-C	5.52744080777989E-4	9E-17		1.3695	[1.05-1.69] SD increase	Illumina [22400000] (imputed)	N
1203	chr14	81124335	81124336	rs10498546	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	14q31.1	NR	rs10498546-?		7E-6	(genus_Fusobacterium)	0.6055721	[0.35-0.86] unit decrease	Affymetrix [211319]	N
1203	chr14	81130188	81130189	rs181902743	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.1	CEP128	rs181902743-G	1.0	3E-6	(AA)	0.503	unit increase	Illumina [NR] (imputed)	N
1204	chr14	81260376	81260377	rs162171	30299488	Wang TM	2018-10-08	J Natl Cancer Inst	Genome-Wide Association Study of Susceptibility Loci for Radiation-Induced Brain Injury.	Radiation-induced brain injury in nasopharyngeal carcinoma	243 cases, 839 controls	438 cases, 1,422 controls	14q31.1	CEP128	rs162171-A	0.182	6E-9		1.46	[1.29-1.66]	Illumina [445078]	N
1205	chr14	81375327	81375328	rs113811441	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	14q31.1	NR	rs113811441-?	NR	7E-6		0.017834153	[0.003-0.103]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1206	chr14	81405134	81405135	rs2114702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q31.1		rs2114702-A	NR	3E-10		0.07	[0.048-0.092] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1206	chr14	81405921	81405922	rs12587252	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		14q31.1	C14orf45	rs12587252-T	NR	2E-6		0.0785	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1206	chr14	81406340	81406341	rs17111237	30299488	Wang TM	2018-10-08	J Natl Cancer Inst	Genome-Wide Association Study of Susceptibility Loci for Radiation-Induced Brain Injury.	Radiation-induced brain injury in nasopharyngeal carcinoma	243 cases, 839 controls	438 cases, 1,422 controls	14q31.1	CEP128	rs17111237-G	0.137	3E-7		1.45	[1.26-1.66]	Illumina [445078]	N
1206	chr14	81438069	81438070	rs179256	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	TSHR	rs179256-G	0.910386027379806	3E-17		0.0668	[0.051-0.082] SD decrease	Illumina [22400000] (imputed)	N
1206	chr14	81445120	81445121	rs1035144	29217827	Sanders AR	2017-12-07	Sci Rep	Genome-Wide Association Study of Male Sexual Orientation.	Male sexual orientation	1,077 European ancestry homosexual men, 1,231 European ancestry heterosexual men	NA	14q31.1	TSHR	rs1035144-C	0.509	5E-7		0.328	[0.20-0.46] unit decrease	Affymetrix [5642880] (imputed)	N
1206	chr14	81451228	81451229	rs12101261	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	14q31.1	TSHR	rs12101261-T	0.64	7E-24		1.35	[1.28-1.43]	Illumina [486049]	N
1206	chr14	81457256	81457257	rs28414437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q31.1		rs28414437-C	0.603797555	2E-15		0.22512618	[0.17-0.28] unit increase	Illumina [13429311] (imputed)	N
1206	chr14	81457256	81457257	rs28414437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q31.1		rs28414437-C	NR	2E-36		0.2871	[0.24-0.33] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1206	chr14	81458761	81458762	rs2300519	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	14q31.1	TSHR	rs2300519-A	0.38	1E-38		1.54	[1.44-1.64]	Illumina [103875]	N
1206	chr14	81461471	81461472	rs2160215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q31.1		rs2160215-C	NR	4E-28		0.2483	[0.2-0.29] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
1206	chr14	81462648	81462649	rs4903961	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	14q31.1		rs4903961-G	0.612869767	2E-13		1.26409	[1.187528644-1.345587164]	Illumina [8919992] (imputed)	N
1206	chr14	81497392	81497393	rs2300525	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to anticonvulsants (pain relief efficacy)	99 Japanese ancestry individuals	NA	14q31.1	NR	rs2300525-?	NR	1E-6				Illumina [445723]	N
1206	chr14	81506820	81506821	rs116622332	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	14q31.1	TSHR	rs116622332-C	0.046	4E-10		30.67	[21.07-40.27] unit increase	Illumina [4962728] (imputed)	N
1206	chr14	81523127	81523128	rs17111394	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q31.1	TSHR	rs17111394-T	NR	4E-6		0.216	[0.11-0.32] unit increase	Illumina [~ 2740000] (imputed)	N
1206	chr14	81524053	81524054	rs17111396	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	14q31.1	TSHR	rs17111396-A	0.27	1E-6		0.192	[0.11-0.27] unit decrease	Affymetrix [2366856] (imputed)	N
1207	chr14	81575453	81575454	rs8017455	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	14q31.1	TSHR	rs8017455-T	NR	6E-6				Illumina [~ 1000000] (imputed)	N
1207	chr14	81578925	81578926	rs12888772	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	14q31.1	RP11-114 N19.3	rs12888772-A	0.18	8E-7		1.3	[1.17-1.44]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1207	chr14	81586673	81586674	rs8020969	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	TSHR	rs8020969-T	0.233898987722443	2E-27		0.0583	[0.048-0.069] SD decrease	Illumina [22400000] (imputed)	N
1207	chr14	81594379	81594380	rs3783938	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	14q31.1	TSHR	rs3783938-T	0.07	8E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1207	chr14	81598911	81598912	rs17111530	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	14q31.1	TSHR	rs17111530-T	0.0667	1E-6		2.529	[NR] unit decrease	Illumina [1216189] (imputed)	N
1207	chr14	81600203	81600204	rs66489957	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	14q31.1	TSHR	rs66489957-T	0.7692	4E-6		1.1447657		Illumina [8265319] (imputed)	N
1207	chr14	81610058	81610059	rs121908872	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	TSHR	rs121908872-A	6.96812465321051E-4	2E-31		1.6294	[1.36-1.9] SD increase	Illumina [22400000] (imputed)	N
1207	chr14	81610227	81610228	rs139352934	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	TSHR	rs139352934-A	0.00197123340330996	4E-40		1.1001	[0.94-1.26] SD increase	Illumina [22400000] (imputed)	N
1207	chr14	81610372	81610373	rs143773384	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Sorangium abundance in stool	5,959 Finnish ancestry individuals	NA	14q31.1		rs143773384-T	0.0121294	1E-8		0.131301	[0.086-0.176] unit decrease	Illumina [7980478] (imputed)	N
1207	chr14	81610372	81610373	rs143773384	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium I abundance in stool	5,959 Finnish ancestry individuals	NA	14q31.1		rs143773384-T	0.0121294	9E-9		0.140589	[0.093-0.189] unit increase	Illumina [7980478] (imputed)	N
1207	chr14	81610941	81610942	rs7144481	25729143	Ahmetov I	2014-10-21	Biol Sport	Genome-wide association study identifies three novel genetic markers associated with elite endurance performance.	Maximal oxygen uptake response	15 Russian ancestry male long endurance athletes, 17 Russian ancestry female long endurance athletes, 31 Russian ancestry middle and short endurance athletes, 17 Russian ancestry middle and short endurance athletes	NA	14q31.1	TSHR	rs7144481-C	NR	9E-8	(MLE, MA, FA)			Illumina [1140419]	N
1207	chr14	81611605	81611606	rs2288493	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	14q31.1	TSHR	rs2288493-T	0.24	8E-8		6.18	[2.95-13.0]	Affymetrix [426344]	N
1207	chr14	81617995	81617996	rs11622435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	14q31.1		rs11622435-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1207	chr14	81617995	81617996	rs11622435	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Chronic kidney disease in diabetes	5,447 European ancestry cases, 4,717 European ancestry controls	5,406 European ancestry cases, 8,744 European ancestry controls, 2,964 Asian cases, 3,323 Asian controls, 207 Chinese ancestry cases, 273 Chinese ancestry controls, 58 Indian ancestry cases, 107 Indian ancestry controls, 103 Malay ancestry cases, 56 Malay ancestry controls	14q31.1	NR	rs11622435-?		2E-7	(EA)	1.48	[1.20-1.81]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1207	chr14	81619944	81619945	rs12893151	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	TSHR, GTF2A1	rs12893151-A	0.207451791195655	7E-22		0.0556	[0.044-0.067] SD decrease	Illumina [22400000] (imputed)	N
1207	chr14	81619944	81619945	rs12893151	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	14q31.1	TSHR	rs12893151-A	0.22	2E-15		0.057	[0.043-0.071] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1207	chr14	81635322	81635323	rs10131728	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q31.1	NR	rs10131728-C	0.872444873552983	2E-7	(IGP31)	0.2398	[0.15-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1207	chr14	81635887	81635888	rs9646167	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q31.1	GTF2A1	rs9646167-C	0.477399	3E-13		0.0139878	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1207	chr14	81637073	81637074	rs1864167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q31.1		rs1864167-A	NR	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1207	chr14	81637073	81637074	rs1864167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q31.1		rs1864167-A	NR	3E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1207	chr14	81637073	81637074	rs1864167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q31.1		rs1864167-A	NR	3E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1207	chr14	81637073	81637074	rs1864167	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q31.1	GTF2A1	rs1864167-G	0.464605	7E-15		0.0154215	[0.012-0.019] unit increase	Affymetrix [NR] (imputed)	N
1207	chr14	81638878	81638879	rs5810015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q31.1	RP11-114N19.3	rs5810015-C	0.538398	1E-9		0.013690797	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr14	81639158	81639159	rs11159493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	14q31.1	NR	rs11159493-T	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr14	81639158	81639159	rs11159493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q31.1	NR	rs11159493-T	0.535817	3E-10		0.012147	[0.0084-0.0159] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1207	chr14	81639158	81639159	rs11159493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q31.1		rs11159493-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1208	chr14	81665356	81665357	rs191633940	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q31.1	GTF2A1	rs191633940-A	9.37494150237569E-4	1E-12		0.7868	[0.57-1] SD decrease	Illumina [22400000] (imputed)	N
1208	chr14	81668706	81668707	rs9806027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q31.1	GTF2A1	rs9806027-C	0.554488	3E-15		0.017594224	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1208	chr14	81668706	81668707	rs9806027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q31.1	GTF2A1	rs9806027-C	0.554483	8E-16		0.017968895	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1208	chr14	81668706	81668707	rs9806027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q31.1	NR	rs9806027-C	0.543932	6E-16				Affymetrix, Illumina [24649327] (imputed)	N
1208	chr14	81668706	81668707	rs9806027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q31.1	NR	rs9806027-C	0.554314	4E-18		0.016107	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1208	chr14	81668706	81668707	rs9806027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q31.1		rs9806027-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1208	chr14	81675419	81675420	rs2099108	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q31.1		rs2099108-C	NR	3E-8		1.05		Illumina [NR] (imputed)	N
1208	chr14	81686938	81686938	rs145594822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q31.1		rs145594822-AT	NR	9E-12		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1208	chr14	81686938	81686938	rs145594822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q31.1	NR	rs145594822-I	0.554362	5E-17		0.017522	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1208	chr14	81701081	81701082	rs8004096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q31.1	NR	rs8004096-G	0.544809	6E-14				Affymetrix, Illumina [23114412] (imputed)	N
1208	chr14	81702735	81702736	rs8011097	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q31.1	NR	rs8011097-T	0.445618	2E-8		0.017651	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
1208	chr14	81707056	81707057	rs8016982	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q31.1	NR	rs8016982-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1208	chr14	81715988	81715989	rs12892815	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	14q31.1		rs12892815-?	NR	4E-8		0.0166	NR unit increase	NR [4484088] (imputed)	N
1208	chr14	81719356	81719357	rs8015423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q31.1		rs8015423-T	NR	5E-8		0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1208	chr14	81719356	81719357	rs8015423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q31.1		rs8015423-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1208	chr14	81756478	81756479	rs2081988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.1	STON2	rs2081988-?	NR	2E-6	(indoxyl sulfate)	0.18711928	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1208	chr14	81778643	81778644	rs6574644	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	STON2	rs6574644-G	0.154	5E-6	(Urinary free norepinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1209	chr14	81810944	81810945	rs2012796	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q31.1	STON2, DYNLL1P1, GTF2A1, SEL1L	rs2012796-A	NR	4E-6	(sleep duration, weekdays)	0.2352	[0.14-0.34] unit decrease	Affymetrix [7141204] (imputed)	N
1209	chr14	81814753	81814754	rs56223983	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	14q31.1	STON2	rs56223983-?	NA	3E-13		1.89	[1.38-2.4] unit decrease	Affymetrix [5541230] (imputed)	N
1209	chr14	81814753	81814754	rs56223983	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	14q31.1	STON2	rs56223983-T	0.3	4E-9		2.0	[1.33-2.67] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1209	chr14	81850850	81850851	rs35317163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q31.1	STON2	rs35317163-G	0.308239	2E-13		0.018083904	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr14	81853290	81853291	rs1569011	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q31.1	STON2	rs1569011-A	0.4368	8E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1209	chr14	81853519	81853520	rs1569013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q31.1		rs1569013-T	0.544592	1E-10		0.0215736	[0.015-0.028] unit decrease	Illumina [13478928] (imputed)	N
1209	chr14	81855343	81855344	rs4275784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q31.1	NR	rs4275784-T	0.181077	4E-25				Affymetrix, Illumina [24588908] (imputed)	N
1209	chr14	81856322	81856323	rs4083463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q31.1		rs4083463-A	NR	5E-19		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1209	chr14	81856322	81856323	rs4083463	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	14q31.1		rs4083463-A	NR	3E-7		0.0117	[0.0074-0.016] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1209	chr14	81856322	81856323	rs4083463	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	14q31.1		rs4083463-A	0.33	3E-24		0.01	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1209	chr14	81856322	81856323	rs4083463	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	14q31.1		rs4083463-A	0.31	2E-6		0.012	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1209	chr14	81856864	81856865	rs61986598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q31.1	STON2	rs61986598-A	0.333861	6E-16		0.01940305	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr14	81859520	81859521	rs8020575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q31.1	NR	rs8020575-A	0.332426	3E-22		0.019035	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1209	chr14	81870099	81870100	rs6574652	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q31.1	STON2	rs6574652-T	0.5016	3E-10		0.0017	[0.0011-0.0023] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1209	chr14	81881734	81881735	rs7144547	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	14q31.1	STON2	rs7144547-?		7E-6				Illumina [2668805]	N
1209	chr14	81884514	81884515	rs3844535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q31.1	STON2	rs3844535-G	0.6999	2E-9		0.02390486	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1209	chr14	81884514	81884515	rs3844535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q31.1	STON2	rs3844535-G	0.6999	3E-9		0.02371963	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1210	chr14	81942928	81942929	rs17094188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q31.1		rs17094188-C	NR	2E-9		0.0307	[0.021-0.041] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1210	chr14	81942928	81942929	rs17094188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q31.1	NR	rs17094188-C	0.0410561	8E-10				Affymetrix, Illumina [23472807] (imputed)	N
1210	chr14	81972440	81972441	rs11499034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q31.1	SEL1L	rs11499034-C	0.014172	3E-10		0.058720067	[0.04-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
1210	chr14	81972440	81972441	rs11499034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q31.1	NR	rs11499034-C	0.014276	1E-10		0.051787	[0.036-0.068] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1210	chr14	81972440	81972441	rs11499034	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	14q31.1	SEL1L	rs11499034-T	0.9857	1E-8		0.328	[0.21-0.45] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1210	chr14	82031120	82031121	rs190480000	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q31.1	NR	rs190480000-?	NR	1E-6	(Latino)	0.9245	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1210	chr14	82039460	82039461	rs79073669	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q31.1	NR	rs79073669-?	NR	8E-6		0.097767	[0.055-0.141] unit increase	Affymetrix [805426] (imputed)	N
1211	chr14	82067690	82067691	rs12888449	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	14q31.1	NR	rs12888449-?	NR	5E-8	(Clostridium_celerecrescens)	0.229328	[0.15-0.31] unit decrease	Illumina [5293637] (imputed)	N
1212	chr14	82224789	82224790	rs72693367	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL355838.1	rs72693367-?	NR	1E-9	(female)	1.27507	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1212	chr14	82299172	82299173	rs12589327	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	14q31.1	SEL1L	rs12589327-?	0.39	7E-6	(PD2)	2.13	[NR]	Illumina [~ 1400000] (imputed)	N
1213	chr14	82337664	82337665	rs1959122	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	14q31.1	AL160192.2	rs1959122-?		9E-7	(EA, Inherited)	7.63	[2.92-19.95]	Illumina [2421290] (imputed)	N
1213	chr14	82429883	82429884	rs72695476	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	14q31.1		rs72695476-?	NR	2E-6				Illumina [7401356] (imputed)	N
1213	chr14	82437951	82437952	rs57037058	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	14q31.1		rs57037058-?	NR	7E-6				Illumina [7401356] (imputed)	N
1215	chr14	82702711	82702712	rs10133279	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q31.1	SEL1L	rs10133279-C	0.558438	3E-10		0.00896156	[0.0062-0.0117] unit decrease	Affymetrix [12370749]	N
1216	chr14	82804331	82804332	rs111625585	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	14q31.1	NR	rs111625585-T	0.06	7E-8		1.57	1.33-1.84	NR [8482392] (imputed)	N
1216	chr14	82812345	82812346	rs112971866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.1	NR	rs112971866-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1217	chr14	82910646	82910647	rs799248	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	14q31.1		rs799248-C	NR	4E-6		2.88	[1.78-4.67]	Illumina [10838245] (imputed)	N
1217	chr14	82941990	82941991	rs10145849	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	14q31.1	NR	rs10145849-G		3E-6		0.0755	[0.044-0.107] SD units increase	NR [10700000] (imputed)	N
1218	chr14	83013875	83013876	rs4517716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q31.1		rs4517716-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1220	chr14	83255171	83255172	rs746629	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	14q31.1	NR	rs746629-T	0.5251	2E-6		0.0237	[0.014-0.034] unit decrease	Illumina [up to 1980188] (imputed)	N
1220	chr14	83255204	83255205	rs746630	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	intergenic	rs746630-G	0.26	4E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1220	chr14	83272652	83272653	rs148071215	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	14q31.1	intergenic	rs148071215-A	0.0217	4E-7		4.3652	[3.80-4.93]	Illumina [8809853] (imputed)	N
1220	chr14	83313422	83313423	rs74762567	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q31.1	intergenic	rs74762567-C	NR	2E-6		0.1384716	[0.051-0.226] unit decrease	Illumina [> 6200000] (imputed)	N
1220	chr14	83316797	83316798	rs8008741	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Saccharomonospora abundance in stool	5,959 Finnish ancestry individuals	NA	14q31.1		rs8008741-G	0.141882	3E-8		0.0393844	[0.025-0.053] unit decrease	Illumina [7980478] (imputed)	N
1220	chr14	83342321	83342322	rs10130259	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.1	intergenic	rs10130259-G	0.066	4E-6	(Diet protein )	0.03	[NR] %energy increase	Illumina [899892]	N
1220	chr14	83347927	83347928	rs79110742	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	14q31.1	intergenic	rs79110742-?	0.06	8E-7		0.94	[0.57-1.31] unit increase	Illumina [6112217] (imputed)	N
1220	chr14	83354937	83354938	rs8023225	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	14q31.1	intergenic	rs8023225-?	0.08	4E-6		0.77	[0.44-1.10] unit increase	Illumina [6112217] (imputed)	N
1221	chr14	83378002	83378003	rs12050412	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		14q31.1	intergenic	rs12050412-T	0.80	5E-6		0.077	[0.044-0.11] unit increase	Illumina [~ 2400000] (imputed)	N
1221	chr14	83443694	83443695	rs10143718	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.1	STON2	rs10143718-?	NR	3E-6	(glycocholate)	0.2802445	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1222	chr14	83575602	83575603	rs17117973	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.2	STON2	rs17117973-?	NR	3E-6	(aspartate)	1.2359394	[0.72-1.75] unit increase	Affymetrix [at least 2500000] (imputed)	N
1222	chr14	83577466	83577467	rs10132493	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	14q31.2	NR	rs10132493-?		4E-6	(genus_Fusobacterium)	0.5951891	[0.36-0.83] unit increase	Affymetrix [211319]	N
1222	chr14	83589862	83589863	rs117113357	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q31.2	NR	rs117113357-?	NR	5E-9				Illumina [7760689] (imputed)	N
1223	chr14	83636865	83636866	rs182698104	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	14q31.2	NR	rs182698104-?	NR	5E-6		0.5535	[0.31-0.8] unit increase	Illumina [at least 560000] (imputed)	N
1224	chr14	83789344	83789345	rs10484157	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	14q31.2	LOC101928599	rs10484157-T	0.11	5E-6	(Right HG area)	10.01	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1224	chr14	83818718	83818719	rs11849687	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	14q31.2	NR	rs11849687-?	NR	4E-6		1.66	[1.51-1.83]	Illumina [539000] (imputed)	N
1224	chr14	83822725	83822726	rs11852029	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	14q31.2	intergenic	rs11852029-?	NR	8E-9		1.082	[1.053-1.111]	Illumina [13729857] (imputed)	N
1224	chr14	83867395	83867396	rs8016484	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.2	STON2	rs8016484-?	NR	4E-6	(histidine)	0.1763917	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1224	chr14	83867534	83867535	rs229836	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsessive compulsive disorder severity	376 Spanish ancestry individuals	NA	14q31.2	LOC100421611	rs229836-?	NR	8E-6		1.950295	NR unit increase	Illumina [338357]	N
1226	chr14	84050482	84050483	rs114808606	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.2	NR	rs114808606-C	0.01394	9E-12	(GGH)	0.09361	NR unit increase	Illumina [1671387] (imputed)	N
1226	chr14	84090067	84090068	rs945347	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q31.2	NR	rs945347-?	NR	3E-12				Affymetrix [NR]	N
1227	chr14	84253270	84253271	rs10149448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	14q31.2		rs10149448-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1228	chr14	84292262	84292263	rs140660435	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.2	Intergenic	rs140660435-C	1.0	2E-6	(AA)	0.51	unit increase	Illumina [NR] (imputed)	N
1228	chr14	84309663	84309664	rs1698268	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	14q31.2	LINC01467, LINC00911	rs1698268-T	0.29	3E-18		0.025	[0.015-0.035] unit decrease	Affymetrix [27624732] (imputed)	N
1228	chr14	84338430	84338431	rs1756281	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	14q31.2	LINC00911	rs1756281-A	0.6987	8E-16		0.0222	[0.017-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1228	chr14	84338430	84338431	rs1756281	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q31.2	LINC00911	rs1756281-A	0.6987	1E-19		0.0237	[0.019-0.029] unit increase	Affymetrix [19819130] (imputed)	N
1228	chr14	84338430	84338431	rs1756281	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	14q31.2	LINC00911	rs1756281-A	0.6987	1E-6		0.0125	[0.0074-0.0176] unit increase	Affymetrix [19819130] (imputed)	N
1228	chr14	84338430	84338431	rs1756281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q31.2		rs1756281-?	NR	6E-31				NR [~ 8900000] (imputed)	N
1228	chr14	84356185	84356186	rs1698249	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	14q31.2	NR	rs1698249-C		4E-6		0.1698	[0.097-0.243] SD units increase	NR [10700000] (imputed)	N
1228	chr14	84379112	84379113	rs12588746	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	14q31.2	RP11-353P15.1	rs12588746-T	0.37	3E-6	(male)	0.205	[0.12-0.29] unit increase	Illumina [6380737] (imputed)	N
1228	chr14	84379112	84379113	rs12588746	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	14q31.2	RP11-353P15.1	rs12588746-T	0.37	4E-6	(male)	50.1	[28.93-71.27] unit increase	Illumina [6380737] (imputed)	N
1229	chr14	84467961	84467962	rs8009336	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q31.2	NR	rs8009336-?	NR	2E-8				Affymetrix [NR]	N
1229	chr14	84474296	84474297	rs138048027	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.2	Intergenic	rs138048027-A	0.999	4E-6	(AA)	0.472	unit increase	Illumina [NR] (imputed)	N
1229	chr14	84477712	84477713	rs41379545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.2	Intergenic	rs41379545-T	0.0834	1E-8	(MTAG)	0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1229	chr14	84482155	84482156	rs144213213	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	14q31.2	NR	rs144213213-C	0.9809848	2E-7		1.0857763	[1.05-1.12]	Affymetrix [7791636] (imputed)	N
1230	chr14	84597384	84597385	rs7152554	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.2	intergenic	rs7152554-G	0.201	6E-6	(Diet carbohydrate )	0.02	[NR] g/d increase	Illumina [899892]	N
1230	chr14	84597572	84597573	rs117866409	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Aldosterone levels	3,549 individuals	NA	14q31.2		rs117866409-C	NR	2E-7		0.206116	[0.13-0.28] unit increase	Affymetrix [10900000] (imputed)	N
1230	chr14	84597572	84597573	rs117866409	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Aldosterone levels	2,220 men	NA	14q31.2		rs117866409-C	NR	3E-8		0.275455	[0.18-0.37] unit increase	Affymetrix [10900000] (imputed)	N
1230	chr14	84603162	84603163	rs7156510	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	14q31.2	intergenic	rs7156510-T	0.47	1E-6		0.21	[0.13-0.29] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1230	chr14	84613893	84613894	rs10400694	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	14q31.2	FLRT2	rs10400694-C	0.52	9E-7	(AA)	0.24	[0.14-0.34] unit increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1230	chr14	84625792	84625793	rs1564060	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	14q31.2	intergenic	rs1564060-A	0.43	3E-7		0.24	[0.14-0.34] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
1230	chr14	84640015	84640016	rs1779549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.2		rs1779549-A	0.46	8E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1230	chr14	84640015	84640016	rs1779549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.2	Intergenic	rs1779549-A	0.46	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1230	chr14	84644821	84644822	rs1676062	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q31.2	NR	rs1676062-?	NR	8E-9		1.054741	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1230	chr14	84669480	84669481	rs8012642	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q31.2	LOC10042161	rs8012642-C	NR	7E-8		1.056	[1.04-1.08]	Illumina [6627481] (imputed)	N
1230	chr14	84669480	84669481	rs8012642	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q31.2	LOC10042161	rs8012642-C	NR	4E-6	(EA)	1.0553	[1.03-1.08]	Illumina [6627481] (imputed)	N
1230	chr14	84669480	84669481	rs8012642	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q31.2	FLRT2	rs8012642-C	NR	5E-8		1.055	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1230	chr14	84669480	84669481	rs8012642	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q31.2	NR	rs8012642-C	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1231	chr14	84700743	84700744	rs4904167	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q31.2	intergenic	rs4904167-T		5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1231	chr14	84775208	84775209	rs11159647	18976728	Bertram L	2008-10-29	Am J Hum Genet	Genome-wide association analysis reveals putative Alzheimer's disease susceptibility loci in addition to APOE.	Alzheimer's disease	941 European ancestry cases and 404 European ancestry controls from 410 families	1,767 European ancestry cases and 838 European ancestry controls from 875 families	14q31.2	intergenic	rs11159647-?	NR	2E-6				Affymetrix [484522]	N
1231	chr14	84788152	84788153	rs7146625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.2		rs7146625-A	0.7313	8E-9		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1231	chr14	84788152	84788153	rs7146625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.2	Intergenic	rs7146625-A	0.7313	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1231	chr14	84800603	84800604	rs115366932	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	14q31.2	FLRT2	rs115366932-?		4E-6	(AA)	0.574	[0.34-0.8] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1232	chr14	84804487	84804488	rs117714106	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Myocardial infarction in darapladib-treated cardiovascular disease (time to event)	740 European, African American, Asian and other ancestry cases	NA	14q31.2	intergenic	rs117714106-T	0.007	5E-10		3.79	[2.5-5.88]	Affymetrix, Illumina [9334585] (imputed)	N
1232	chr14	84804487	84804488	rs117714106	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Myocardial infarction in cardiovascular disease (time to event) (darapladib treatment interaction)	740 European, African American, Asian and other ancestry darapladib-treated cases, 833 European, African American, Asian and other ancestry placebo-treated cases	NA	14q31.2	intergenic	rs117714106-T	0.007	2E-6				Affymetrix, Illumina [9334585] (imputed)	N
1232	chr14	84867756	84867757	rs3924099	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q31.3		rs3924099-A	0.46	8E-10		6.15	z score increase	Affymetrix [9061022] (imputed)	N
1232	chr14	84896823	84896824	rs143148393	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs143148393-T	0.035	5E-8		0.0211	[0.013-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1232	chr14	84909890	84909891	rs12883785	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q31.3	NR	rs12883785-C	0.3944	1E-9				NR [9056863] (imputed)	N
1232	chr14	84913110	84913111	rs17119973	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs17119973-A	0.2574	2E-16	(conditional-joint)	0.0132	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1232	chr14	84916510	84916511	rs58694847	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q31.3	ENSG00000259012	rs58694847-?	NR	1E-13		0.016648613	[0.012-0.021] unit decrease	NR [7306098]	N
1232	chr14	84916510	84916511	rs58694847	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	14q31.3	NR	rs58694847-C	0.2592	5E-12		0.017509628	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1232	chr14	84916510	84916511	rs58694847	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	14q31.3	NR	rs58694847-?	0.7414	3E-9		1.0404296	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1232	chr14	84916917	84916918	rs12892472	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q31.3		rs12892472-C	0.612	2E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1232	chr14	84917207	84917208	rs12434273	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	14q31.3	intergenic	rs12434273-C	0.4	6E-6		0.012	NR unit increase	Illumina [1231747]	N
1232	chr14	84920756	84920757	rs7147577	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q31.3	LOC105370605	rs7147577-G	0.627252	3E-10		0.0120669	[0.0083-0.0158] unit increase	NR [13737936] (imputed)	N
1232	chr14	84920959	84920960	rs9323746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q31.3		rs9323746-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1233	chr14	84955924	84955925	rs1947213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q31.3	Intergenic	rs1947213-T	0.7289	5E-10	(MTAG)	0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr14	84955924	84955925	rs1947213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q31.3	Intergenic	rs1947213-T	0.7289	5E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1233	chr14	84968700	84968701	rs3000038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q31.3	Intergenic	rs3000038-A	0.7169	2E-11	(MTAG)	0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr14	84973291	84973292	rs12894449	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	14q31.3	intergenic	rs12894449-G	0.48	3E-6		0.013	NR unit increase	Illumina [1231747]	N
1233	chr14	84976393	84976394	rs2998298	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	14q31.3	intergenic	rs2998298-A	0.47	3E-6		0.013	NR unit increase	Illumina [1231747]	N
1233	chr14	84977721	84977722	rs10047882	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q31.3		rs10047882-A	0.46	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1233	chr14	84980035	84980036	rs2053831	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	14q31.3	intergenic	rs2053831-A	0.776	8E-6		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1233	chr14	84987634	84987635	rs2922629	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	14q31.3	intergenic	rs2922629-T	0.3	7E-6		0.012	NR unit increase	Illumina [1231747]	N
1233	chr14	84994880	84994881	rs79497057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.3	Intergenic	rs79497057-T	0.2244	2E-14	(MTAG)	0.0121	[0.009-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr14	84997362	84997363	rs2998299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs2998299-T	0.2137	2E-15		0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1233	chr14	85018549	85018550	rs2998309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q31.3		rs2998309-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1233	chr14	85026058	85026059	rs2998314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q31.3	Intergenic	rs2998314-T	0.7106	4E-9	(MTAG)	0.0149	[0.01-0.0198] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr14	85062961	85062962	rs67853298	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q31.3	NR	rs67853298-?	NR	5E-6		4.563	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1234	chr14	85112637	85112638	rs72694479	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs72694479-T	0.1412	5E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1234	chr14	85114168	85114169	rs11159673	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	14q31.3	NR	rs11159673-A	NR	7E-6	(univariable, additive)	3.096	[1.879-5.073]	Illumina [729373]	N
1234	chr14	85136641	85136642	rs12147575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.3	Intergenic	rs12147575-A	0.1344	1E-10	(MTAG)	0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1234	chr14	85149298	85149299	rs148429573	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q31.3	intergenic	rs148429573-T	0.0119501377507489	9E-6	(O_Lactobacillales_HB)	1.27493	[0.71-1.84] unit decrease	Illumina [7711310] (imputed)	N
1235	chr14	85249557	85249558	rs1481412	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	14q31.3	intergenic	rs1481412-A	0.254655	3E-6		0.212287	[0.12-0.3] unit increase	NR [7263501] (imputed)	N
1236	chr14	85350141	85350142	rs4550384	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q31.3	FLRT2	rs4550384-T	0.758	2E-9		1.0239831		Affymetrix [11880941] (imputed)	N
1236	chr14	85388937	85388938	rs2199876	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	14q31.3		rs2199876-?	NR	5E-11				NR [9705931] (imputed)	N
1237	chr14	85508392	85508393	rs856621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q31.3		rs856621-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1237	chr14	85565926	85565927	rs12887386	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q31.3	NR	rs12887386-A	NR	7E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
1237	chr14	85577358	85577359	rs17120757	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q31.3	NR	rs17120757-?		7E-6				Illumina [4322238] (imputed)	N
1238	chr14	85598104	85598105	rs74071436	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	14q31.3		rs74071436-?	NR	1E-6		0.29	[0.17-0.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1238	chr14	85598791	85598792	rs79306025	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	14q31.3	intergenic	rs79306025-A	NR	2E-6	(females)	0.44	[0.26-0.62] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1238	chr14	85615939	85615940	rs10149105	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide output	229 European ancestry infants		14q31.3	NR	rs10149105-A	NR	7E-6	(adjusted)	0.1	nL/s decrease	Illumina [567864]	N
1238	chr14	85624262	85624262	rs551086366	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q31.3	LOC105370605	rs551086366-G	0.634472	2E-8		0.012072	[0.0078-0.0163] unit decrease	NR [16516521] (imputed)	N
1238	chr14	85642674	85642675	rs145956055	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q31.3	NR	rs145956055-?	NR	9E-6		4.444	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1238	chr14	85643639	85643640	rs9671744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q31.3	NR	rs9671744-?	NR	7E-7				Affymetrix [NR]	N
1238	chr14	85649164	85649165	rs79853982	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	14q31.3	NR	rs79853982-A	NR	4E-6				NR [NR] (imputed)	N
1238	chr14	85649164	85649165	rs79853982	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	14q31.3	NR	rs79853982-A	NR	4E-6				NR [NR] (imputed)	N
1238	chr14	85650464	85650465	rs1667525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.3	GALC	rs1667525-?	NR	8E-6	(TAG 54:5)	0.15512691	[0.087-0.223] unit increase	Affymetrix [at least 2500000] (imputed)	N
1238	chr14	85650464	85650465	rs1667525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.3	GALC	rs1667525-?	NR	4E-7	(TAG 52:4)	0.17810977	[0.11-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1238	chr14	85650464	85650465	rs1667525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.3	GALC	rs1667525-?	NR	3E-6	(TAG 52:3)	0.16611806	[0.097-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1238	chr14	85654018	85654019	rs12436689	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	14q31.3	FLRT2	rs12436689-?	NR	7E-6	(FEV1 decline in asthmatics)	0.2117	[0.12-0.30] unit decrease	Illumina [~ 2500000] (imputed)	N
1238	chr14	85669100	85669101	rs1627044	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	14q31.3	RP11-789A21.1	rs1627044-A	0.4768	8E-6		0.0359	[0.02-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1238	chr14	85683052	85683053	rs1550584	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q31.3	NR	rs1550584-C	0.469772138901295	7E-6	(IGP18)	0.1382	[0.078-0.198] unit decrease	Illumina [~ 2500000] (imputed)	N
1239	chr14	85727200	85727201	rs72687593	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q31.3		rs72687593-G	0.43	4E-17		8.42	z score increase	Affymetrix [9061022] (imputed)	N
1239	chr14	85727200	85727201	rs72687593	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q31.3		rs72687593-G	0.43	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
1239	chr14	85727903	85727904	rs12436074	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q31.3	SNORD3P3	rs12436074-A	0.56	2E-19		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1239	chr14	85731389	85731390	rs12880832	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q31.3		rs12880832-A	0.43	8E-14		7.47	z score increase	Affymetrix [9061022] (imputed)	N
1239	chr14	85731389	85731390	rs12880832	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q31.3	NR	rs12880832-A	0.4024	3E-12				NR [9056863] (imputed)	N
1239	chr14	85731389	85731390	rs12880832	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q31.3	NR	rs12880832-A	0.4024	7E-11				NR [9056863] (imputed)	N
1239	chr14	85731389	85731390	rs12880832	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	14q31.3		rs12880832-?	NR	2E-10				NR [9705931] (imputed)	N
1239	chr14	85737168	85737169	rs1867082	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	14q31.3	intergenic	rs1867082-A		1E-6		2.82	[NR] ms increase	Illumina [> 930000]	N
1239	chr14	85741241	85741242	rs8012486	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	14q31.3	NR	rs8012486-?	NR	2E-7		0.0488	[0.03-0.067] unit decrease	Illumina [at least 560000] (imputed)	N
1239	chr14	85785250	85785251	rs11627326	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	14q31.3	RP11-497E19.2	rs11627326-G	0.7129	1E-11		0.1546	[0.11-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1239	chr14	85796563	85796564	rs17201923	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	14q31.3	FLRT2	rs17201923-A	0.715401	3E-14		0.540845	[0.4-0.68] unit increase	Affymetrix [~ 7800000] (imputed)	N
1239	chr14	85796563	85796564	rs17201923	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q31.3	FLRT2	rs17201923-G	0.28	7E-29		0.4096	[0.34-0.48] unit decrease	Affymetrix [19941912] (imputed)	N
1239	chr14	85806773	85806774	rs17796777	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q31.3	FLRT2	rs17796777-C	0.286	2E-17	(Leucine-rich repeat transmembrane protein FLRT2, FLRT2.13122.19.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1239	chr14	85808117	85808118	rs12898075	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLRT2	5,362 Icelandic ancestry individuals	NA	14q31.3		rs12898075-G	0.282	2E-23		0.197827	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1239	chr14	85809910	85809911	rs17796783	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	14q31.3	FLRT2	rs17796783-T	0.716	3E-13		0.334	[0.24-0.43] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1239	chr14	85816581	85816581	rs36107167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q31.3		rs36107167-TAA	NR	2E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	7E-9	(324 ms)	0.0366538	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	3E-9	(322 ms)	0.0373504	[0.025-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	3E-8	(284 ms)	0.0352821	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	2E-9	(308 ms)	0.0381997	[0.026-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	2E-9	(294 ms)	0.0372923	[0.025-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	2E-9	(292 ms)	0.0368837	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	2E-9	(290 ms)	0.0366938	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	2E-9	(288 ms)	0.03679	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	1E-9	(310 ms)	0.0385815	[0.026-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	1E-9	(306 ms)	0.0380794	[0.026-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85840591	85840592	rs12880339	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q31.3	FLRT2	rs12880339-G	0.726176	1E-8	(286 ms)	0.0363391	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1239	chr14	85841671	85841672	rs74954137	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	14q31.3	LINC02329	rs74954137-?		9E-6				NR [7405822] (imputed)	N
1240	chr14	85854479	85854480	rs17796831	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	14q31.3	NR	rs17796831-?	NR	5E-10				Illumina [at least 7383741] (imputed)	N
1240	chr14	85858446	85858447	rs6574818	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q31.3	FLRT2	rs6574818-G	0.72921875	5E-16	(FLRT2, 13122_19_3)	0.21529359	[0.16-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1240	chr14	85942060	85942061	rs185677526	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.3	Intergenic	rs185677526-T	0.998	7E-7	(AA)	0.183	unit increase	Illumina [NR] (imputed)	N
1240	chr14	85949059	85949060	rs17709449	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	14q31.3	LINC00911, FLRT2	rs17709449-T	NR	5E-8		5.447	z-score increase	Illumina [632375]	N
1240	chr14	85956170	85956171	rs191926782	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.3	Intergenic	rs191926782-A	0.998	1E-6	(AA)	0.166	unit increase	Illumina [NR] (imputed)	N
1240	chr14	85963855	85963856	rs8014131	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	14q31.3	FLRT2	rs8014131-A	0.42	3E-7	(AA)	4.61	[2.85-6.37] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr14	85973399	85973400	rs192253363	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.3	Intergenic	rs192253363-G	0.998	2E-6	(AA)	0.161	unit increase	Illumina [NR] (imputed)	N
1241	chr14	86003360	86003361	rs1955406	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	14q31.3	NR	rs1955406-A	0.058	3E-7	(IFNalpha_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1241	chr14	86009141	86009142	rs984586	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	14q31.3	FLRT2	rs984586-G	0.76	3E-12		0.007	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1241	chr14	86009141	86009142	rs984586	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	14q31.3	FLRT2	rs984586-G	0.76	1E-8		0.0059	[0.0039-0.0079] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1241	chr14	86041159	86041160	rs17712080	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q31.3	FLRT2	rs17712080-G	0.75	2E-10		0.47	[0.33-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1241	chr14	86041159	86041160	rs17712080	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q31.3	FLRT2	rs17712080-G	0.7472	3E-10		0.4844	[0.33-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1241	chr14	86065406	86065407	rs2746995	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	14q31.3	FLRT2	rs2746995-T	0.1609	3E-17	(FLRT2)	0.59315	[0.46-0.73] unit decrease	Illumina [8683751] (imputed)	N
1241	chr14	86072523	86072524	rs12587268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q31.3		rs12587268-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1241	chr14	86096146	86096147	rs141669870	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	14q31.3		rs141669870-?	NR	2E-6				Illumina [7401356] (imputed)	N
1242	chr14	86119801	86119802	rs10483981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q31.3		rs10483981-T	0.2703	4E-9		0.014635843	[0.0098-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr14	86119801	86119802	rs10483981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q31.3		rs10483981-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1242	chr14	86192479	86192480	rs75812946	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cataracts	24,622 Japanese ancestry cases, 187,831 Japanese ancestry controls	NA	14q31.3		rs75812946-A	0.01148623	3E-9		1.353509	[1.224244982-1.496421528]	Illumina [8919992] (imputed)	N
1243	chr14	86315580	86315581	rs182981601	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q31.3	NR	rs182981601-?	NR	9E-10				Illumina [7760689] (imputed)	N
1243	chr14	86336503	86336504	rs144560641	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	14q31.3	Intergenic	rs144560641-A	0.012	2E-6		0.055	NR unit increase	Illumina [NR] (imputed)	N
1244	chr14	86387887	86387888	rs143309580	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	14q31.3	FLRT2, LOC283585	rs143309580-T	0.02	6E-7	(African American)	1.39	[0.84-1.94] unit decrease	Illumina [up to 13042663] (imputed)	N
1244	chr14	86460794	86460795	rs147949813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs147949813-T	0.01045	8E-9	(CAPNS1)	0.02991	NR unit increase	Illumina [1671387] (imputed)	N
1244	chr14	86460794	86460795	rs147949813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs147949813-T	0.01045	4E-9	(CNN2)	0.02001	NR unit increase	Illumina [1671387] (imputed)	N
1244	chr14	86460794	86460795	rs147949813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs147949813-T	0.01045	3E-10	(DCN)	0.06778	NR unit increase	Illumina [1671387] (imputed)	N
1244	chr14	86460794	86460795	rs147949813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs147949813-T	0.01045	3E-10	(CKB)	0.03564	NR unit increase	Illumina [1671387] (imputed)	N
1244	chr14	86460794	86460795	rs147949813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs147949813-T	0.01045	2E-10	(CAPN2)	0.06369	NR unit increase	Illumina [1671387] (imputed)	N
1245	chr14	86520945	86520946	rs79297743	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs79297743-C	0.01045	4E-9	(LRG1)	0.06246	NR unit increase	Illumina [1671387] (imputed)	N
1245	chr14	86577771	86577772	rs149008976	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	14q31.3	FLRT2, LOC283585	rs149008976-A	0.02	6E-7	(African American)	1.39	[0.84-1.94] unit decrease	Illumina [up to 13042663] (imputed)	N
1246	chr14	86768363	86768364	rs12586420	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.3	Intergenic	rs12586420-A	0.351	3E-7	(AA)	0.095	NR unit increase	Illumina [NR] (imputed)	N
1246	chr14	86768364	86768365	rs12586478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q31.3	Intergenic	rs12586478-G	0.352	3E-7	(AA)	0.095	NR unit increase	Illumina [NR] (imputed)	N
1247	chr14	86784567	86784568	rs146274783	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	14q31.3	NR	rs146274783-A	0.048372	1E-6		5.208298	[3.12-7.29] unit increase	Illumina [9469131] (imputed)	N
1247	chr14	86817095	86817096	rs10484100	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	14q31.3	FLRT2	rs10484100-?	NR	3E-6		0.209	[0.12-0.30] unit increase	Illumina [> 2500000] (imputed)	N
1248	chr14	86902053	86902054	rs12882718	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	14q31.3	LOC100421119	rs12882718-T	0.643	6E-6	(Dominant model)	1.555	[1.283-1.884]	Illumina [733202]	N
1248	chr14	86970135	86970136	rs199877031	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	14q31.3	NR	rs199877031-G	0.043456	2E-6		5.414756	[3.21-7.62] unit increase	Illumina [9469131] (imputed)	N
1249	chr14	87088041	87088042	rs5810331	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	14q31.3	Intergenic	rs5810331-TG	0.738471429	6E-6		0.168768	unit decrease	Illumina [6969139] (imputed)	N
1249	chr14	87114375	87114376	rs61323942	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	14q31.3	Intergenic	rs61323942-A	0.678597143	6E-6		0.157365	[0.089-0.226] unit decrease	Illumina [6952813] (imputed)	N
1249	chr14	87120820	87120821	rs12882183	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	14q31.3	LOC101928767, LOC283585	rs12882183-A	0.34	8E-6		0.18	unit increase	Illumina [5600000] (imputed)	N
1250	chr14	87224558	87224559	rs148533734	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	14q31.3		rs148533734-?	NR	9E-6		1.244719	[1.13006356318912-1.37100743518201]	Illumina [7827597] (imputed)	N
1251	chr14	87312713	87312714	rs112786236	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q31.3	RP11-322L20.1	rs112786236-T	0.0153922924617444	1E-6	(G_Coprococcus_HB)	1.19271	[0.71-1.67] unit decrease	Illumina [7711310] (imputed)	N
1251	chr14	87312972	87312973	rs79762263	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	14q31.3		rs79762263-G	0.05779	9E-6		1.464	[1.237-1.733]	Affymetrix [7975321] (imputed)	N
1252	chr14	87451837	87451838	rs186667699	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	14q31.3	NR	rs186667699-C	0.039322	1E-6		5.654238	[3.36-7.95] unit increase	Illumina [9469131] (imputed)	N
1252	chr14	87506247	87506248	rs11624056	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q31.3	intergenic	rs11624056-?	0.11	3E-8	(Recessive)	1.43	[1.26-1.62]	Affymetrix [319222]	N
1253	chr14	87627708	87627709	rs117240677	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	14q31.3		rs117240677-?	NR	8E-6		1.527	[1.268-1.839]	Affymetrix [7975321] (imputed)	N
1253	chr14	87641836	87641837	rs1682522	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	14q31.3	GALC, LOC283585	rs1682522-T	0.12	9E-7		3.16	[1.99-4.99]	Affymetrix, Illumina [at least 603042] (imputed)	N
1254	chr14	87741024	87741025	rs1756650	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	14q31.3	GALC	rs1756650-G	0.162	2E-6	(Recessive model)	1.386	[0.954-2.014]	Illumina [733202]	N
1254	chr14	87773652	87773653	rs17123289	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	14q31.3	LINC02296	rs17123289-?	NR	1E-10	(FreeC)	0.033076495	NR unit decrease	Illumina [609262]	N
1255	chr14	87896525	87896526	rs8004994	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	14q31.3	NR	rs8004994-?	NR	6E-7		0.04236247	[0.026-0.059] unit decrease	Illumina [7519308] (imputed)	N
1257	chr14	88203391	88203392	rs2153486	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	14q31.3	LOC283585, GALC	rs2153486-?	NR	1E-6	(East and South Asian)			NR [at least 880000]	N
1258	chr14	88295599	88295600	rs4322600	22923054	Chen F	2012-08-25	Hum Genet	A genome-wide association study of breast cancer in women of African ancestry.	Breast cancer	3,016 African American cases, 2,745 African American controls	3,533 African ancestry cases, 11,046 African ancestry controls	14q31.3	GALC	rs4322600-G	0.78	4E-6		1.18	[1.10-1.27]	Illumina [2067098] (imputed)	N
1258	chr14	88321883	88321884	rs8008772	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q31.3	GALC	rs8008772-A	0.749476	6E-9		0.00926237	[0.0061-0.0124] unit decrease	Affymetrix [12370749]	N
1258	chr14	88321883	88321884	rs8008772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.3	NR	rs8008772-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1258	chr14	88321883	88321884	rs8008772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q31.3		rs8008772-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1258	chr14	88321883	88321884	rs8008772	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q31.3	NA	rs8008772-A	0.7454	2E-11		0.0133	[0.0094-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
1258	chr14	88341659	88341659	rs377453624	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	14q31.3		rs377453624-?	NR	2E-8		2.1305	[1.39-2.87] unit decrease	Affymetrix [NR] (imputed)	N
1259	chr14	88358785	88358786	rs34539850	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs34539850-C	0.02091	1E-8	(PSMB6)	0.04846	NR unit increase	Illumina [1671387] (imputed)	N
1259	chr14	88375039	88375040	rs7141307	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q31.3	NA	rs7141307-T	0.7397	6E-13		0.0141	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1259	chr14	88383034	88383035	rs11845506	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	14q31.3	GALC	rs11845506-?	NR	5E-10	(Hispanic)	5.0	[3.03-8.33]	Illumina [at least 5000000] (imputed)	N
1259	chr14	88390503	88390504	rs10139547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q31.3		rs10139547-A	NR	8E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1259	chr14	88391373	88391374	rs386525	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			GALC	rs386525-G	0.4813	1E-9		0.0496007	[0.034-0.066] unit decrease	Affymetrix [8165723] (imputed)	N
1259	chr14	88403491	88403492	rs115256851	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Viral capsid antigen IgG seropositivity	1,344 Ugandan ancestry cases, 218 Ugandan ancestry controls	NA	14q31.3	GALC	rs115256851-?	0.989	7E-10		1.45	[1.23-1.75]	Illumina [~ 17000000] (imputed)	N
1259	chr14	88417820	88417821	rs408667	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q31.3	GALC	rs408667-A	NR	3E-7		1.0526316	NR	Affymetrix, Illumina [8278136] (imputed)	N
1259	chr14	88432327	88432328	rs74796499	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	14q31.3	GALC	rs74796499-C	0.95	2E-20		1.32		Illumina [161311]	N
1259	chr14	88444751	88444752	rs55808324	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q31.3	NR	rs55808324-?	NR	5E-17	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1259	chr14	88454909	88454910	rs2289511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	14q31.3	GALC	rs2289511-A	0.582058	8E-17		0.018776897	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1259	chr14	88454909	88454910	rs2289511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	14q31.3	GALC	rs2289511-A	0.582057	6E-15		0.017614482	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1259	chr14	88454909	88454910	rs2289511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q31.3	NR	rs2289511-A	0.582293	3E-15		0.016386	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1259	chr14	88456446	88456447	rs71423502	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q31.3	NR	rs71423502-A	0.01568	6E-9	(PSMB6)	0.0576	NR unit increase	Illumina [1671387] (imputed)	N
1259	chr14	88462987	88462988	rs7140285	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Pulmonary artery enlargement in chronic obstructive pulmonary disease	1,006 European ancestry cases, 260 African American cases, 3,281 European ancestry controls, 494 African American controls	NA	14q31.3	GALC	rs7140285-T	0.08	4E-8		1.55	[1.33-1.81]	Illumina [NR] (imputed)	N
1259	chr14	88464263	88464264	rs979812	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	14q31.3	GALC	rs979812-T	0.4421	6E-11		0.061	[0.043-0.079] unit increase	NR [7784415] (imputed)	N
1259	chr14	88470977	88470978	rs28533072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q31.3	NR	rs28533072-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q31.3		rs8005161-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	14q31.3	GALC, GPR65	rs8005161-?		3E-11				Illumina [9725440] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	14q31.3	GALC, GPR65	rs8005161-?		5E-12				Illumina [9560910] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q31.3	NR	rs8005161-A	0.08653	3E-9	(EA)	1.1371082	[1.09-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	14q31.3	NR	rs8005161-A	0.08653	9E-14	(EA)	1.1677363	[1.13-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	14q31.3	GALC, GPR65	rs8005161-T	0.089	2E-14		1.153	[1.097-1.211]	Affymetrix, Illumina [1230000] (imputed)	N
1259	chr14	88472594	88472595	rs8005161	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	14q31.3	GALC, GPR65	rs8005161-T	0.119	4E-18		1.23	[1.16-1.31]	Affymetrix, Illumina [953241] (imputed)	N
1259	chr14	88472611	88472612	rs8005172	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	14q31.3	GPR65	rs8005172-T		6E-10		0.086	[0.059-0.113] unit increase	Illumina [NR]	N
1259	chr14	88472611	88472612	rs8005172	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	14q31.3	GALC	rs8005172-T	0.424	9E-11		1.08	[1.05-1.10]	Illumina [11933700] (imputed)	N
1260	chr14	88475920	88475921	rs35355673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q31.3	NR	rs35355673-A	0.582613	6E-13				Affymetrix, Illumina [19905671] (imputed)	N
1260	chr14	88477881	88477882	rs3742704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q31.3	GPR65	rs3742704-C	0.091821	4E-9		0.022566918	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr14	88487688	88487689	rs2119704	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Diastolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	14q31.3	GPR65	rs2119704-A	0.07	3E-6		4.6	percent decrease	Illumina [631844]	N
1260	chr14	88487688	88487689	rs2119704	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q31.3	GALC	rs2119704-?	NR	3E-6	(glycocholate)	0.32264066	[0.19-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1260	chr14	88487688	88487689	rs2119704	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	14q31.3	GPR65	rs2119704-C	NR	2E-10		1.22	[1.19-1.25]	Illumina [465434]	N
1260	chr14	88488820	88488821	rs11624293	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	14q31.3	RP11-300J18.1	rs11624293-?	NR	2E-17	(subset analysis)			Illumina [130052]	N
1260	chr14	88488820	88488821	rs11624293	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	14q31.3	GPR65	rs11624293-C	0.087	2E-10	(EA)	1.23		Illumina [128935]	N
1260	chr14	88488820	88488821	rs11624293	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	14q31.3	GPR65	rs11624293-C	0.087	2E-10		1.2		Illumina [128935]	N
1260	chr14	88490140	88490143	rs372014862	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	14q31.3	GPR65	rs372014862-G	NR	3E-6		3.5639124	[2.11-5.02] unit decrease	Illumina [> 6200000] (imputed)	N
1260	chr14	88504940	88504941	rs10144053	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	14q31.3	GPR65, KCNK10	rs10144053-T	0.15	6E-6	(EA)	2.04	[1.49-2.79]	Illumina [up to 547389]	N
1260	chr14	88515948	88515949	rs1372356	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	14q31.3	GPR65	rs1372356-C	0.489	6E-7	(BSA-b)	0.2	[NR] unit decrease	Illumina [944565] (imputed)	N
1260	chr14	88556524	88556525	rs11159840	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	14q31.3	LOC283587	rs11159840-?	NR	2E-6		1.6105342	[1.32-1.96]	Illumina [at least 4483243] (imputed)	N
1260	chr14	88559991	88559992	rs6574988	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q31.3	NR	rs6574988-?	NR	4E-6	(dominant)			Affymetrix [NR]	N
1260	chr14	88560544	88560545	rs8005150	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	14q31.3	NR	rs8005150-?	NR	6E-6		0.3418	[0.19-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1260	chr14	88571906	88571907	rs72696020	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nitrofurantoin)	64 European ancestry cases, 10,588 European ancestry controls	NA	14q31.3		rs72696020-?		6E-8		7.8	3.52-14.66	Illumina [505740] (imputed)	N
1261	chr14	88605508	88605509	rs17124112	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q31.3	KCNK10	rs17124112-C	0.920067	4E-9		0.0207538	[0.014-0.028] unit increase	Affymetrix [NR] (imputed)	N
1261	chr14	88629867	88629868	rs144365885	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	14q31.3	NR	rs144365885-?	NR	8E-6		2.17	[1.95-2.41]	Illumina [539000] (imputed)	N
1261	chr14	88632320	88632321	rs2236267	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	14q31.3	KCNK10	rs2236267-C	0.462	4E-7	(BSA-b)	0.2	[NR] unit increase	Illumina [944565] (imputed)	N
1261	chr14	88646767	88646768	rs11848513	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	14q31.3	Intergenic	rs11848513-G	0.0888	7E-6		0.8693	[0.49-1.25] unit increase	Illumina [9520174] (imputed)	N
1261	chr14	88685075	88685076	rs17124276	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	14q31.3	KCNK10	rs17124276-T	NR	9E-6		1.36	[1.19-1.56]	NR [7738399] (imputed)	N
1262	chr14	88766824	88766825	rs17692117	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	14q31.3	KCNK10, GPR65, SPATA7	rs17692117-C	0.06	5E-7		1.05	[0.64-1.46] unit decrease	Illumina [8257341] (imputed)	N
1262	chr14	88802304	88802305	rs61977024	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q31.3		rs61977024-C	0.31	2E-10		6.34	z score increase	Affymetrix [9061022] (imputed)	N
1262	chr14	88802304	88802305	rs61977024	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q31.3	NR	rs61977024-C	0.3263	8E-11				NR [9056863] (imputed)	N
1262	chr14	88813929	88813930	rs12879287	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q31.3		rs12879287-T	0.45	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1262	chr14	88826481	88826482	rs17772222	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q31.3	SPATA7	rs17772222-A	0.81	3E-6	(AA)	0.21	[0.13-0.29] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1262	chr14	88826681	88826682	rs17124581	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	14q31.3	NR	rs17124581-C	0.05777	2E-6		0.3132	[0.19-0.44] unit increase	Illumina [10677593] (imputed)	N
1262	chr14	88826681	88826682	rs17124581	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	14q31.3	SPATA7	rs17124581-T	0.06	3E-6	(2-choice RT)	0.27	[0.15-0.39] unit decrease	Illumina [~ 610000]	N
1262	chr14	88829974	88829975	rs1028455	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q31.3	SPATA7	rs1028455-A	0.3273	1E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1262	chr14	88829974	88829975	rs1028455	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q31.3	SPATA7	rs1028455-A	0.3316	2E-13		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1262	chr14	88861850	88861852	rs71126982	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	14q31.3	SPATA7	rs71126982-A	0.427	7E-7	(EA)	0.0018	[0.001-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1262	chr14	88861850	88861852	rs71126982	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	14q31.3	SPATA7	rs71126982-A	0.405	3E-7		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
1263	chr14	88874914	88874915	rs60503594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q31.3		rs60503594-C	NR	4E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1263	chr14	88895940	88895941	rs61975260	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	14q31.3	SPATA7	rs61975260-?	NR	6E-7		2.0242915	[1.53-2.67]	Illumina [5407269] (imputed)	N
1263	chr14	88969690	88969691	rs77916371	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	14q31.3	PTPN21	rs77916371-?	NR	6E-6		4.522	[NR] z score decrease	Illumina [6737359] (imputed)	N
1263	chr14	88969690	88969691	rs77916371	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	14q31.3	PTPN21	rs77916371-?	NR	6E-6		4.522	z score decrease	Illumina [6737359] (imputed)	N
1264	chr14	89008545	89008546	rs112374894	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	14q31.3	PTPN21	rs112374894-?		7E-6				Illumina [2668805]	N
1264	chr14	89032297	89032298	rs9743523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q31.3		rs9743523-A	NR	6E-10		0.0293	[0.02-0.039] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1264	chr14	89051204	89051205	rs117561482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q31.3		rs117561482-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1264	chr14	89052426	89052427	rs12434162	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	14q31.3	ZC3H14	rs12434162-G	NR	3E-6	(adjusted for total body fat)	0.0878	[0.051-0.124] unit increase	Illumina [8511049] (imputed)	N
1264	chr14	89056698	89056699	rs6575012	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	14q31.3	NR	rs6575012-A	0.4819	3E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1266	chr14	89276430	89276431	rs11845781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs11845781-T	0.5552	2E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1266	chr14	89276430	89276431	rs11845781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.3	Intergenic	rs11845781-T	0.5552	1E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1266	chr14	89350335	89350336	rs57068616	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	14q31.3		rs57068616-A	0.02136	9E-6		2.213	[1.559-3.141]	Affymetrix [7975321] (imputed)	N
1266	chr14	89355720	89355721	rs1014894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	14q31.3		rs1014894-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1266	chr14	89372750	89372751	rs17124955	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q31.3	TTC8	rs17124955-G	0.086	9E-6	(HRmax )	0.05	[NR] bpm increase	Illumina [899892]	N
1266	chr14	89377507	89377508	rs4904473	30610941	Wang AW	2019-01-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk.	Anti-Toxoplasma gondii IgG seropositivity	256 Ashkenazi Jewish cases, 68 African American cases, 534 Ashkenazi Jewish controls, 217 African American controls	NA	14q31.3		rs4904473-?		3E-6	(Ashkenazi Jewish)			Affymetrix, Illumina [up to 1101633] (imputed)	N
1266	chr14	89382940	89382941	rs11159878	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	14q31.3	TTC8	rs11159878-?	NR	7E-6				Illumina [126270]	N
1267	chr14	89428947	89428948	rs17125093	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q31.3	TTC8, TRNA_Ala	rs17125093-A	0.2163	5E-10		6.232	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1267	chr14	89429229	89429230	rs56284621	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q31.3	TTC8	rs56284621-?		3E-19				Affymetrix, Illumina [NR] (imputed)	N
1267	chr14	89437415	89437416	rs12589060	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	14q31.3	NR	rs12589060-G	0.48	9E-6	(Oestradiol)			Illumina [709211]	N
1267	chr14	89504452	89504453	rs75603564	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	14q31.3	TTC8, FOXN3	rs75603564-T	0.03	9E-7	(IL-8)	0.42	[0.24-0.6] unit increase	Affymetrix [622716]	N
1267	chr14	89504989	89504990	rs60074425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q31.3		rs60074425-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1268	chr14	89542620	89542621	rs149065551	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	14q31.3	Intergenic	rs149065551-G	0.979	2E-6	(AA)	0.124	NR unit increase	Illumina [NR] (imputed)	N
1268	chr14	89565129	89565130	rs4904503	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	14q31.3	FOXN3	rs4904503-C	0.7027	3E-11		0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1268	chr14	89573234	89573235	rs11626342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q31.3		rs11626342-G	NR	2E-8		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1268	chr14	89594294	89594295	rs7158359	23643386	Hatoum IJ	2013-05-02	Am J Hum Genet	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	14q31.3	FOXN3	rs7158359-G	NR	5E-6		2.27	[1.29-3.25] unit decrease	Illumina [1943170] (imputed)	N
1269	chr14	89667916	89667917	rs77216150	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	14q31.3	FOXN3	rs77216150-T	0.029213786	6E-6		1.5436904	[1.278637808-1.863686591]	Illumina [10439017] (imputed)	N
1269	chr14	89715494	89715495	rs55985762	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q31.3		rs55985762-?	NR	4E-9				NR [7857346] (imputed)	N
1269	chr14	89715494	89715495	rs55985762	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q31.3	FOXN3	rs55985762-A	NR	1E-8		5.691	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1269	chr14	89715494	89715495	rs55985762	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q31.3	FOXN3	rs55985762-A	NR	3E-9		0.021865115	[0.015-0.029] unit increase	Affymetrix [NR]	N
1269	chr14	89723629	89723630	rs4904523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q31.3	Intergenic	rs4904523-A	0.5165	3E-9	(MTAG)	0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr14	89723629	89723630	rs4904523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q31.3		rs4904523-A	0.5208	6E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1269	chr14	89723629	89723630	rs4904523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q31.3	Intergenic	rs4904523-A	0.5208	8E-11	(MTAG)	0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr14	89723629	89723630	rs4904523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q31.3	Intergenic	rs4904523-A	0.5141	2E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr14	89723629	89723630	rs4904523	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q31.3	FOXN3	rs4904523-A	NR	1E-11		0.01971903	[0.014-0.025] unit decrease	Affymetrix [NR]	N
1269	chr14	89738354	89738355	rs4899973	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	14q31.3	FOXN3	rs4899973-?		1E-6				Illumina [301908]	N
1269	chr14	89776558	89776559	rs112599894	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.11	NR	rs112599894-A	0.01568	4E-9	(MYO1B)	0.1583	NR unit increase	Illumina [1671387] (imputed)	N
1269	chr14	89776744	89776745	rs3783863	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	14q32.11	FOXN3	rs3783863-?		5E-6		0.575	[NR] unit decrease	Illumina [5970354] (imputed)	N
1270	chr14	89796071	89796072	rs79162905	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	14q32.11	FOXN3	rs79162905-A	0.11	3E-6				Affymetrix, Illumina [at least 5260671] (imputed)	N
1270	chr14	89804275	89804276	rs3825669	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q32.11	FOXN3	rs3825669-A	0.195052	5E-9		0.0141866	[0.0094-0.0189] unit decrease	Affymetrix [NR] (imputed)	N
1270	chr14	89818631	89818632	rs112679955	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	14q32.11	RP11-356K23.1, FOXN3	rs112679955-A	0.9646	4E-6		0.0902	[0.052-0.129] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1270	chr14	89844110	89844111	rs1952183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q32.11		rs1952183-A	0.5078	3E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1270	chr14	89844110	89844111	rs1952183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.11	Intergenic	rs1952183-A	0.5078	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1270	chr14	89860385	89860386	rs72703614	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.11	FOXN3	rs72703614-G	0.785492	7E-11		0.0147411	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
1270	chr14	89860385	89860386	rs72703614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.11		rs72703614-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1270	chr14	89860385	89860386	rs72703614	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.11		rs72703614-?	NR	2E-11		0.0158282	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1270	chr14	89865923	89865924	rs741273	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q32.11	FOXN3	rs741273-A	0.501	8E-9		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1270	chr14	89884722	89884723	rs11626401	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q32.11	FOXN3	rs11626401-G	0.499158	4E-9	(-20 ms)	0.0349497	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1270	chr14	89884722	89884723	rs11626401	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q32.11	FOXN3	rs11626401-G	0.499158	4E-10	(-22 ms)	0.0359234	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1270	chr14	89884722	89884723	rs11626401	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	14q32.11	FOXN3	rs11626401-G	0.499158	1E-8	(-24 ms)	0.033195	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1270	chr14	89885100	89885102	rs141061110	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.11	NR	rs141061110-C	0.1578	5E-6	(EA)	0.0408	[0.023-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.11	NR	rs1005421-C	NR	2E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.11	NR	rs1005421-C	0.583995	8E-20		0.00741857	[0.0057-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.11	NR	rs1005421-C	0.583258	2E-12		0.00813611	[0.0057-0.0106] unit increase	Affymetrix [16585854] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q32.11	NR	rs1005421-C	0.584769	7E-9		0.00601505	[0.0037-0.0083] unit increase	Affymetrix [16582621] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.11	NR	rs1005421-C	0.583995	4E-17		0.00753179	[0.0057-0.0094] unit increase	Affymetrix [16582965] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.11	NR	rs1005421-C	0.583258	7E-11		0.00873311	[0.0059-0.0116] unit increase	Affymetrix [16585866] (imputed)	N
1270	chr14	89886939	89886940	rs1005421	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q32.11	NR	rs1005421-C	0.584769	2E-7		0.00618279	[0.0037-0.0086] unit increase	Affymetrix [16582614] (imputed)	N
1271	chr14	89917172	89917173	rs7141848	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	14q32.11		rs7141848-C	0.94	1E-5	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1271	chr14	89939101	89939102	rs7147812	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.11	C14orf143	rs7147812-?	NR	7E-6	(TAG 44:1)	0.1935398	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1271	chr14	89946508	89946509	rs4904585	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	14q32.11	FOXN3	rs4904585-C	0.158009	9E-6		0.594838	[0.34-0.85] unit decrease	NR [7263501] (imputed)	N
1271	chr14	90007636	90007637	rs1812755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.11	NR	rs1812755-T	0.799852	2E-11		0.0257744	[0.018-0.033] unit increase	Affymetrix [16577313] (imputed)	N
1271	chr14	90007636	90007637	rs1812755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q32.11	NR	rs1812755-T	0.800419	4E-8		0.0136023	[0.0086-0.0186] unit increase	Affymetrix [16583148] (imputed)	N
1271	chr14	90007636	90007637	rs1812755	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	14q32.11	NR	rs1812755-T	0.800056	5E-19		0.033863	[0.026-0.041] unit increase	Affymetrix [16577424] (imputed)	N
1271	chr14	90012562	90012563	rs243172	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	14q32.11		rs243172-?	NR	4E-6	(serous)	1.22		Illumina [11595112] (imputed)	N
1271	chr14	90030279	90030280	rs171460	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	14q32.11	FOXN3	rs171460-A	0.26	3E-8		0.0145	[0.0094-0.0196] unit decrease	Illumina [~ 250000] (imputed)	N
1271	chr14	90034971	90034972	rs8004664	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	14q32.11	FOXN3	rs8004664-A	0.6063	3E-6		6.45E-4	[-0.00044-0.00173] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1271	chr14	90034971	90034972	rs8004664	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	14q32.11	FOXN3	rs8004664-A	0.6063	1E-6		0.0124	[0.0075-0.0173] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1271	chr14	90036231	90036232	rs243192	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.11	NR	rs243192-G	0.237	7E-9		0.00734794	[0.0049-0.0098] unit decrease	NR [9732723] (imputed)	N
1271	chr14	90046069	90046070	rs10873398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q32.11		rs10873398-A	NR	2E-21		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1272	chr14	90048611	90048612	rs243202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	14q32.11	NR	rs243202-A	NR	1E-9		0.0242	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1272	chr14	90048933	90048934	rs11626777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	14q32.11		rs11626777-C	NR	2E-27		0.0255	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1272	chr14	90052944	90052945	rs243176	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q32.11	FOXN3	rs243176-?		3E-6				Illumina [4322238] (imputed)	N
1272	chr14	90055467	90055468	rs35889227	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	14q32.11	FOXN3	rs35889227-T	0.6184	3E-10		0.013	[0.0093-0.0167] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1272	chr14	90066450	90066451	rs17776811	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	14q32.11	FOXN3	rs17776811-A	0.8493	4E-6		0.0174	[0.01-0.0248] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1272	chr14	90108686	90108687	rs4900006	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy (pathologically confirmed)	295 European ancestry cases, 3,864 European ancestry controls	NA	14q32.11	FOXN3	rs4900006-?	NR	1E-7		4.166667	NR	Illumina [4903804] (imputed)	N
1272	chr14	90168955	90168955	rs796647867	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	14q32.11		rs796647867-ATT	0.592	3E-8		0.047	[0.031-0.063] bpm decrease	Affymetrix [9800000] (imputed)	N
1272	chr14	90168955	90168955	rs796647867	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	14q32.11		rs796647867-ATT	0.591566	3E-8	(male)	0.0467917	[0.030-0.063] bpm decrease	Affymetrix [9800000] (imputed)	N
1273	chr14	90196182	90196183	rs12887387	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	504 European ancestry high cardiovascular risk non-diabetic elderly individuals	NA	14q32.11	intergenic	rs12887387-T	0.162	2E-6		0.232	[NR] unit increase	Illumina [625127]	N
1273	chr14	90227250	90227251	rs2093746	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.11	NR	rs2093746-C	0.265059655250113	3E-7	(IGP4)	0.2878	[0.18-0.4] unit decrease	Illumina [~ 2500000] (imputed)	N
1273	chr14	90227250	90227251	rs2093746	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.11	NR	rs2093746-C	0.265047574785359	2E-7	(IGP44)	0.2917	[0.18-0.4] unit decrease	Illumina [~ 2500000] (imputed)	N
1273	chr14	90245408	90245409	rs7158327	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.11	FOXN3	rs7158327-?	NR	8E-6	(lactate)	0.25030288	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1273	chr14	90250091	90250092	rs17716780	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute xerostomia)	869 Dutch ancestry individuals	246 Dutch ancestry individuals	14q32.11		rs17716780-A	NR	7E-6		0.08798283	[0.05-0.126] increase	Illumina [6334277] (imputed)	N
1273	chr14	90298274	90298275	rs8021963	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	14q32.11	BX247991, EFCAB11	rs8021963-C		2E-6		0.3002	unit increase	Illumina [5767231] (imputed)	N
1273	chr14	90301034	90301035	rs12100561	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,	14q32.11	C14orf143	rs12100561-?	0.39	4E-6		1.52	[1.26-1.83]	Affymetrix [658897]	N
1274	chr14	90396573	90396574	rs7147996	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	14q32.11	c14ORF143	rs7147996-A	0.12	6E-6	(AA-triglyceride response)	28.09	[15.96-40.22] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1274	chr14	90407818	90407819	rs8022306	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Dysmenorrheic pain severity	5,734 Japanese ancestry female individuals	5,614 Japanese ancestry female individuals	14q32.11	NR	rs8022306-A	0.504987059	7E-6		0.20192496	[0.11-0.29] unit increase	Affymetrix [536506]	N
1274	chr14	90421557	90421558	rs3759710	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with epithelioid cells	285 European ancestry cases, 5,199 European ancestry controls	NA	14q32.11		rs3759710-C	0.05	9E-10		2.32		Illumina [10258281] (imputed)	N
1274	chr14	90421557	90421558	rs3759710	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with chromosome 3 loss	253 European ancestry cases, 5,199 European ancestry controls	NA	14q32.11		rs3759710-C	0.05	2E-7		2.14		Illumina [10258281] (imputed)	N
1274	chr14	90421557	90421558	rs3759710	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with any chromosomal aberration	417 European ancestry cases, 5,199 European ancestry controls	NA	14q32.11		rs3759710-C	0.05	7E-11		2.16		Illumina [10258281] (imputed)	N
1274	chr14	90421557	90421558	rs3759710	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	14q32.11		rs3759710-C	0.06	1E-7		1.78	[1.44-2.2]	Illumina [10258281] (imputed)	N
1274	chr14	90421557	90421558	rs3759710	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	14q32.11		rs3759710-C	0.05	3E-6		1.79		Illumina [10258281] (imputed)	N
1276	chr14	90605435	90605436	rs17799178	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	14q32.11	NR	rs17799178-G	0.0486	2E-6		0.1405	[0.082-0.199] unit decrease	Illumina [up to 1980188] (imputed)	N
1276	chr14	90605435	90605436	rs17799178	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	14q32.11	NR	rs17799178-G	0.0524	7E-6		0.1552	[0.088-0.223] unit decrease	Illumina [up to 1980188] (imputed)	N
1276	chr14	90615512	90615513	rs4900022	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q32.11	KCNK13	rs4900022-A	0.93	4E-6	(AA)	0.45	[0.25-0.65] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1276	chr14	90665688	90665689	rs4904644	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	14q32.11	KCNK13, PSMC1	rs4904644-A		2E-6		0.245	[0.14-0.35] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1276	chr14	90679909	90679910	rs8017423	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	14q32.11	KCNK13	rs8017423-T	0.62	7E-6	(AA)	1.64	[0.94-2.78]	Affymetrix [up to 2366858] (imputed)	N
1277	chr14	90754310	90754311	rs11626933	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	14q32.11	C14orf102	rs11626933-G	NR	2E-8	(Unclassified Erysipelotrichaceae)	0.24	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1277	chr14	90758890	90758891	rs2282032	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	14q32.11	C14orf102	rs2282032-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1277	chr14	90770209	90770210	rs4904670	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	14q32.11	NRDE2, C14orf102	rs4904670-?	0.13	2E-9	(females)	5.026	unit decrease	Affymetrix [429783]	N
1278	chr14	90849407	90849408	rs9806062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q32.11		rs9806062-T	NR	2E-14		0.0254	[0.019-0.032] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1278	chr14	90850228	90850229	rs7144433	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q32.11	NR	rs7144433-T	0.8923	1E-14		0.002755	[0.002-0.0035] unit decrease	Affymetrix [NR] (imputed)	N
1278	chr14	90869912	90869913	rs3213718	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	14q32.11	CALM1	rs3213718-T	0.582807	7E-6		0.022431	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1279	chr14	90970214	90970215	rs1299403	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	14q32.11	NR	rs1299403-?	NR	4E-8	(Erysipelothrix)	0.406307	[0.27-0.54] unit increase	Illumina [5293637] (imputed)	N
1279	chr14	90981505	90981506	rs1739988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q32.11		rs1739988-C	0.5607	3E-8		0.011745	[0.0076-0.0159] unit decrease	Illumina [13479295] (imputed)	N
1279	chr14	90989752	90989753	rs12884098	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	14q32.11	NR	rs12884098-?	NR	6E-6		0.1834	[0.1-0.26] unit increase	Illumina [at least 560000] (imputed)	N
1279	chr14	90996542	90996543	rs1294554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q32.11		rs1294554-C	NR	2E-9		0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1279	chr14	90996542	90996543	rs1294554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.11		rs1294554-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1279	chr14	91015839	91015840	rs61986994	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	14q32.11	TTC7B	rs61986994-C	0.918	3E-6		1.4925373	[1.32-1.66]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1279	chr14	91022184	91022185	rs17793829	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	14q32.11	TTC7B	rs17793829-A	0.26	9E-6		0.201	[0.11-0.29] unit increase	Illumina [546677]	N
1279	chr14	91085491	91085492	rs111677446	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	14q32.11		rs111677446-C	0.979973	7E-6		0.0459463	[0.026-0.066] unit increase	Illumina [13900000] (imputed)	N
1280	chr14	91123843	91123844	rs3742658	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	14q32.11	TTC7B	rs3742658-C	NR	6E-9		1.08	[1.06-1.1]	Affymetrix [up to 49134253] (imputed)	N
1280	chr14	91130762	91130763	rs2003253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.11		rs2003253-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1280	chr14	91165062	91165063	rs1742101	28120872	Li X	2017-01-25	Sci Rep	Genome-wide association study identifies four SNPs associated with response to platinum-based neoadjuvant chemotherapy for cervical cancer.	Response to platinum-based neoadjuvant chemotherapy in cervical cancer	66 Han Chinese ancestry non-responder cases, 160 Han Chinese ancestry responder cases	79 Han Chinese ancestry non-responder cases, 291 Han Chinese ancestry responder cases	14q32.11	CALM1, TTC7B, NRDE2, PSMC1, RPS18P2, RPS6KA5, RNU7- 30P, C14orf159, SNORA11B	rs1742101-G	0.5	7E-6		1.92	[1.45-2.56]	Affymetrix [657178]	N
1280	chr14	91185864	91185865	rs184628474	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	14q32.11	TTC7B	rs184628474-?	NR	4E-7				Affymetrix, Illumina [7850345] (imputed)	N
1280	chr14	91225072	91225073	rs11848870	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	14q32.11	TTC7B	rs11848870-T	NR	6E-6	(men)	0.127887	[0.073-0.183] unit decrease	Illumina [13520550] (imputed)	N
1281	chr14	91233871	91233872	rs72695515	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	14q32.11	TTC7B	rs72695515-C	0.0532709	4E-6		2.468	[1.682 - 3.622]	Illumina [5396854] (imputed)	N
1281	chr14	91257774	91257775	rs1286341	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	14q32.11	NR	rs1286341-?	NR	8E-6		0.0722	[0.04-0.104] unit decrease	Illumina [at least 560000] (imputed)	N
1281	chr14	91286227	91286228	rs7141336	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	14q32.11	TTC7B	rs7141336-C		6E-6	(AA, factor score analysis)	0.19	[NR] unit increase	Affymetrix [up to 730090]	N
1281	chr14	91313811	91313812	rs1286290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q32.11	NR	rs1286290-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1281	chr14	91329385	91329386	rs75055810	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	14q32.11	NR	rs75055810-T	0.7773	3E-8		0.0377	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1282	chr14	91361841	91361842	rs144434563	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	14q32.11	RPS6KA5	rs144434563-G	0.0135	7E-6		0.1265	NR unit increase	NR [NR] (imputed)	N
1282	chr14	91372958	91372959	rs1152430	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q32.11	RPS6KA5	rs1152430-C	NR	8E-6		1.0594	NR	Affymetrix, Illumina [8278136] (imputed)	N
1282	chr14	91377794	91377795	rs28675386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q32.11	NR	rs28675386-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1282	chr14	91390340	91390341	rs1286127	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q32.11	NR	rs1286127-T	0.551	5E-9		0.00776001	[0.0052-0.0104] unit decrease	NR [~ 9732723] (imputed)	N
1282	chr14	91435704	91435705	rs3783832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs3783832-C	NR	1E-14		0.0239547	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
1282	chr14	91435704	91435705	rs3783832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs3783832-C	NR	3E-15		0.0245727	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
1282	chr14	91435704	91435705	rs3783832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs3783832-C	NR	4E-9		0.0184378	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1282	chr14	91435704	91435705	rs3783832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs3783832-C	NR	3E-10		0.0197039	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1282	chr14	91442778	91442779	rs1286083	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	14q32.11	RPS6KA5	rs1286083-T	0.82	2E-17		1.05	[1.04-1.07]	Affymetrix, Illumina [2539801] (imputed)	N
1282	chr14	91442778	91442779	rs1286083	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	14q32.11	RPS6KA5	rs1286083-T	0.81	2E-15		0.05	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1282	chr14	91445161	91445162	rs1286079	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	14q32.11	NR	rs1286079-T	0.1882	5E-12	(European)	0.0552	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1282	chr14	91446795	91446796	rs1286075	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.11	RPS6KA5	rs1286075-C	0.828001	2E-36		0.0310889	[0.026-0.036] unit decrease	NR [13737936] (imputed)	N
1282	chr14	91446795	91446796	rs1286075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.11		rs1286075-?	NR	4E-35				NR [~ 8900000] (imputed)	N
1282	chr14	91446795	91446796	rs1286075	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.11		rs1286075-?	NR	3E-36		0.0326471	[0.027-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1282	chr14	91449393	91449394	rs1286070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q32.11		rs1286070-C	NR	7E-12		0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1282	chr14	91450153	91450153	rs765754428	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.11		rs765754428-?	NR	1E-31		0.0402437	[0.033-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
1282	chr14	91452515	91452517	rs35457116	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q32.11	NR	rs35457116-G	NR	4E-9		0.0183	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1282	chr14	91452840	91452841	rs1286063	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	14q32.11	RPS6KA5	rs1286063-T	0.802686	6E-12		0.066	[0.047-0.085] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1282	chr14	91452840	91452841	rs1286063	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	14q32.11	RPS6KA5	rs1286063-T	0.802686	4E-8		0.0468	[0.03-0.064] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1282	chr14	91464889	91464890	rs1286150	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	14q32.11	NR	rs1286150-T	0.8045	2E-14		0.0549	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1282	chr14	91467566	91467567	rs1286147	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q32.11	RPS6KA5	rs1286147-A	0.826623	3E-12		0.00206711	[0.0015-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1282	chr14	91473270	91473271	rs8005489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	14q32.11	NR	rs8005489-A	NR	2E-11		0.0238	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1282	chr14	91485444	91485445	rs1286138	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.11	RPS6KA5	rs1286138-T	0.325079	8E-10		0.00900388	[0.0061-0.0119] unit decrease	Affymetrix [12370749]	N
1282	chr14	91486878	91486898	rs34407471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q32.11		rs34407471-C	NR	1E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1283	chr14	91499131	91499132	rs34722618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q32.11		rs34722618-G	NR	4E-13		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1283	chr14	91502442	91502442	rs11432593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs11432593-T	NR	2E-13		0.0210181	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91502442	91502442	rs11432593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs11432593-T	NR	1E-13		0.0211212	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91510837	91510838	rs4904742	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs4904742-C	NR	5E-8		0.0176208	[0.011-0.024] unit increase	Affymetrix [321169] (imputed)	N
1283	chr14	91512338	91512339	rs1951455	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.11	NA	rs1951455-T	0.2813	6E-15		0.0148	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1283	chr14	91512598	91512599	rs7156757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs7156757-A	NR	2E-9		0.0185536	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1283	chr14	91512950	91512951	rs1285998	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs1285998-G	NR	2E-10		0.0204789	[0.014-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1283	chr14	91513028	91513029	rs1285997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.11	NR	rs1285997-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1283	chr14	91513028	91513029	rs1285997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.11		rs1285997-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1283	chr14	91513028	91513029	rs1285997	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q32.11	NA	rs1285997-C	0.2882	7E-15		0.0147	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1283	chr14	91515576	91515577	rs1285995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.11	RPS6KA5	rs1285995-G	NR	8E-9		0.017071	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q32.11	DGLUCY	rs11159989-?	NR	2E-8		0.0016	[0.001-0.0022] unit increase	Affymetrix [21347608] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q32.11	DGLUCY	rs11159989-?	NR	1E-9		0.0025	[0.0015-0.0035] unit increase	Affymetrix [21347608] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.11	C14orf159	rs11159989-T	NR	4E-22		0.0294737	[0.024-0.035] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs11159989-T	NR	9E-23		0.0299158	[0.024-0.036] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q32.11	NR	rs11159989-?	NR	2E-28				Affymetrix [~ 8270000] (imputed)	N
1283	chr14	91531841	91531842	rs11159989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q32.11		rs11159989-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1283	chr14	91533161	91533162	rs8016984	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q32.11	RPS6KA5	rs8016984-C	0.4942	8E-6		0.0046	[0.0026-0.0066] unit increase	Affymetrix [~ 7740000] (imputed)	N
1283	chr14	91544341	91544342	rs56703773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs56703773-C	NR	4E-13		0.0224268	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1283	chr14	91546641	91546642	rs4904744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q32.11	NR	rs4904744-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs7492628-G	NR	2E-13		0.0226777	[0.017-0.029] unit increase	Affymetrix [321169] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	14q32.11	NR	rs7492628-G	0.32	4E-32		0.024	[0.02-0.028] unit increase	Affymetrix [2446094] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	14q32.11	NR	rs7492628-G	0.32	5E-8				Affymetrix [2446094] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	14q32.11	NR	rs7492628-C	0.6801	5E-32		0.0229	[0.019-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q32.11	NA	rs7492628-C	0.6801	8E-11		0.0125	[0.0088-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	14q32.11	NR	rs7492628-C	0.6801	8E-11		0.0125	[0.0088-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	14q32.11	RPS6KA5, C14orf159, TTC7B, SNORA11B, GPR68, CCDC88C, SMEK1, CATSPERB	rs7492628-G	0.3018	7E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1283	chr14	91547135	91547136	rs7492628	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	14q32.11	RPS6KA5, C14orf159, TTC7B, SNORA11B, GPR68, CCDC88C, SMEK1, CATSPERB	rs7492628-G	0.3018	7E-7		0.0292	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1283	chr14	91556694	91556695	rs77314340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.11	C14orf159	rs77314340-A	NR	3E-8		0.0255875	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91556694	91556695	rs77314340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs77314340-A	NR	4E-8		0.0253607	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91556694	91556695	rs77314340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q32.11	NR	rs77314340-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1283	chr14	91560778	91560779	rs10139308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.11	C14orf159	rs10139308-A	NR	7E-12		0.022721	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91560778	91560779	rs10139308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs10139308-A	NR	3E-12		0.0231719	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
1283	chr14	91560778	91560779	rs10139308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs10139308-A	NR	4E-9		0.0197218	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1283	chr14	91560778	91560779	rs10139308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q32.11	C14orf159	rs10139308-A	NR	1E-9		0.0202907	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
1283	chr14	91583372	91583373	rs4900069	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	14q32.11	C14orf159	rs4900069-C	0.37	5E-9		0.1999	[0.13-0.27] unit increase	Affymetrix [19941912] (imputed)	N
1283	chr14	91608043	91608044	rs147203970	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex and smoking status)	3,906 Finnish ancestry individuals	NA	14q32.11		rs147203970-T	0.033	8E-7		0.37	[0.22-0.52] number of affected teeth increase	Illumina [NR] (imputed)	N
1284	chr14	91621153	91621154	rs10148571	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	14q32.11	DGLUCY	rs10148571-G	0.33	2E-37	(glutamate)	0.296	[0.25-0.34] unit increase	Illumina [7750367] (imputed)	N
1284	chr14	91675283	91675284	rs57592410	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.11	NR	rs57592410-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1284	chr14	91739080	91739081	rs941920	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	14q32.11	NA	rs941920-A	0.233	7E-6		0.1593	[0.06538-0.3883]	Illumina [243345]	N
1284	chr14	91749594	91749595	rs2277509	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	14q32.11	CCDC88C	rs2277509-A	0.69865	9E-12		0.0466	[0.033-0.06] unit increase	Illumina [NR]	N
1285	chr14	91830705	91830706	rs137899216	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	14q32.11	GPR68, CCDC88C, SMEK1	rs137899216-T	0.0277	3E-6		0.0911	NR unit increase	NR [NR] (imputed)	N
1285	chr14	91841068	91841069	rs941764	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	14q32.11		rs941764-?	NR	6E-8		1.08453	[1.06-1.11]	NR [682398]	N
1285	chr14	91841068	91841069	rs941764	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	14q32.11		rs941764-G	NR	2E-7		1.0626993	NR	Affymetrix [7846216] (imputed)	N
1285	chr14	91841068	91841069	rs941764	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q32.11		rs941764-A	NR	2E-13		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1285	chr14	91841068	91841069	rs941764	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.11	CCDC88C	rs941764-G	0.35	8E-13	(EA)	1.03	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1285	chr14	91841068	91841069	rs941764	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	14q32.11	NR	rs941764-G	0.34	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1285	chr14	91841068	91841069	rs941764	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	14q32.11	NR	rs941764-G	0.34	6E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1285	chr14	91841068	91841069	rs941764	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	14q32.11	CCDC88C	rs941764-G	0.34	4E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1285	chr14	91870329	91870330	rs117297873	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	14q32.12	CCDC88C, SMEK1, GPR68, CATSPERB	rs117297873-G	NR	8E-6	(daytime resting duration, weekdays)	0.3066	[0.17-0.44] unit increase	Affymetrix [7141204] (imputed)	N
1285	chr14	91871671	91871672	rs7146002	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.12	NR	rs7146002-G	0.4166	1E-9				NR [9056863] (imputed)	N
1285	chr14	91871671	91871672	rs7146002	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	14q32.12	NR	rs7146002-?	NR	6E-6		0.0805964	[0.046-0.116] unit decrease	NR [13958389] (imputed)	N
1285	chr14	91881386	91881387	rs1285841	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	14q32.12	CCDC88C	rs1285841-C	0.5423	5E-10				Affymetrix, Illumina [9900000] (imputed)	N
1285	chr14	91881386	91881387	rs1285841	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	14q32.12	CCDC88C	rs1285841-C	NR	5E-11		0.038	[0.027-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1285	chr14	91881386	91881387	rs1285841	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	14q32.12	CCDC88C	rs1285841-C	0.5438	7E-10		0.0358	[0.024-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1285	chr14	91881386	91881387	rs1285841	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	14q32.12	FBN2, SLC27A6	rs1285841-?		1E-17				NR [7428630] (imputed)	N
1285	chr14	91881386	91881387	rs1285841	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.12	CCDC88C, SMEK1, AL133373.1, CATSPERB	rs1285841-?		8E-21				NR [7428630] (imputed)	N
1286	chr14	91881907	91881908	rs1815237	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.12		rs1815237-G	0.45	4E-18		8.68	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr14	91884654	91884655	rs1285847	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	14q32.12	CCDC88C	rs1285847-T	NR	1E-10		0.0363	[0.025-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1286	chr14	91884654	91884655	rs1285847	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	14q32.12	RP11-895M11.3	rs1285847-T	0.548	2E-6		0.0269	[0.016-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1286	chr14	91885705	91885706	rs1285850	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs1285850-?	NR	3E-8	(right accumbens area)			NR [9227495] (imputed)	N
1286	chr14	91888924	91888924	rs150658557	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.12	NR	rs150658557-TA	0.2029	2E-13	(EA)	0.0605	[0.044-0.077] unit decrease	Illumina [~ 11800000] (imputed)	N
1286	chr14	91890212	91890213	rs529889896	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.12		rs529889896-T	0.45	1E-13		7.4	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr14	91890212	91890213	rs529889896	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.12		rs529889896-T	0.45	8E-13		7.17	z score increase	Affymetrix [9061022] (imputed)	N
1286	chr14	91890212	91890213	rs529889896	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.12	NR	rs529889896-T	0.4187	4E-10				NR [9056863] (imputed)	N
1286	chr14	91897224	91897225	rs7142902	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs7142902-?	NR	2E-9	(right accumbens area)			NR [9227495] (imputed)	N
1286	chr14	91908728	91908728	rs571318149	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	14q32.12		rs571318149-?	NR	3E-10				NR [9705931] (imputed)	N
1286	chr14	91908728	91908728	rs571318149	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.12	NR	rs571318149-T	0.560375	2E-8		0.00466155	[0.003-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
1286	chr14	91908728	91908728	rs571318149	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.12	NR	rs571318149-T	0.560375	8E-10		0.0056516	[0.0038-0.0075] unit increase	Affymetrix [16582965] (imputed)	N
1286	chr14	91913839	91913840	rs58616032	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q32.12	ABCG2	rs58616032-?		5E-8				NR [7428630] (imputed)	N
1286	chr14	91920100	91920101	rs56146971	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	14q32.12	SMEK1	rs56146971-A	NR	8E-7	(between families)	4.941	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1286	chr14	91928285	91928286	rs2273647	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	14q32.12	PPP4R3A	rs2273647-?	NR	4E-8		1.303	[0.84-1.76] unit increase	Illumina [2820932] (imputed)	N
1286	chr14	91930151	91930152	rs10134560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	14q32.12		rs10134560-T	NR	5E-8		0.0411	[0.026-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1286	chr14	91933644	91933649	rs60971485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q32.12		rs60971485-C	NR	2E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1286	chr14	91938875	91938876	rs35863382	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors in depression	6,348 European ancestry responder cases, 3,340 European ancestry non-responder cases	NA	14q32.12	SMEK1	rs35863382-?		7E-7		1.540832	[1.3-1.83]	Illumina [~ 12000000] (imputed)	N
1286	chr14	91939179	91939179	rs113833704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q32.12		rs113833704-ACAAC	NR	3E-11		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1286	chr14	91939179	91939179	rs113833704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q32.12		rs113833704-ACAAC	NR	7E-9		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1286	chr14	91939179	91939179	rs113833704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.12	SMEK1	rs113833704-ACAAC	0.474647	3E-13		0.016363284	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr14	91939179	91939179	rs113833704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.12	SMEK1	rs113833704-ACAAC	0.474527	8E-17		0.018839074	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr14	91941140	91941141	rs11625753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.12	NR	rs11625753-C	0.256305	3E-10		0.013482	[0.0093-0.0177] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1286	chr14	91941140	91941141	rs11625753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.12		rs11625753-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1286	chr14	91945078	91945084	rs142111559	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	14q32.12	PPP4R3A	rs142111559-?	NR	4E-8		1.303	[0.84-1.76] unit increase	Illumina [2820932] (imputed)	N
1286	chr14	91955496	91955497	rs6575198	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs6575198-?	NR	2E-9	(left accumbens area)			NR [9227495] (imputed)	N
1286	chr14	91962278	91962282	rs35119396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.12	SMEK1	rs35119396-A	0.570397	4E-10		0.0151907345	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1286	chr14	91963721	91963722	rs8010382	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q32.12	NR	rs8010382-G	0.4373	6E-12		0.0322	[0.023-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1286	chr14	91963721	91963722	rs8010382	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q32.12	NR	rs8010382-G	0.4692	3E-12		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1286	chr14	91963721	91963722	rs8010382	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q32.12	SMEK1	rs8010382-G	0.4214	7E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1286	chr14	91984537	91984538	rs11160010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.12		rs11160010-T	0.442881	6E-11		0.0136772	[0.0096-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1286	chr14	91984537	91984538	rs11160010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs11160010-T	0.449673	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
1286	chr14	91988575	91988576	rs11625512	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs11625512-?	NR	7E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
1286	chr14	91988575	91988576	rs11625512	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	14q32.12	NR	rs11625512-?		2E-11	(Fornix (column and body))			NR [8955960] (imputed)	N
1286	chr14	91988575	91988576	rs11625512	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	14q32.12	NR	rs11625512-?		1E-11	(Fornix (column and body))			NR [8955960] (imputed)	N
1286	chr14	91988575	91988576	rs11625512	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	14q32.12	NR	rs11625512-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1286	chr14	91988575	91988576	rs11625512	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	14q32.12	NR	rs11625512-?		9E-13	(Fornix (column and body))			NR [8955960] (imputed)	N
1286	chr14	92011796	92011800	rs139530473	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.12	NR	rs139530473-T	0.2511	1E-10	(EA)	0.0481	[0.033-0.063] unit decrease	Illumina [~ 11800000] (imputed)	N
1287	chr14	92012671	92012672	rs1743083	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	14q32.12	AL133373.1	rs1743083-A	0.4464	3E-6		0.0299	[0.017-0.042] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1287	chr14	92012671	92012672	rs1743083	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	14q32.12	NR	rs1743083-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1287	chr14	92012672	92012673	rs1704668	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	14q32.12	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs1704668-?		1E-8				NR [7428630] (imputed)	N
1287	chr14	92012672	92012673	rs1704668	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	14q32.12	EPHA3	rs1704668-?		4E-8				NR [7428630] (imputed)	N
1287	chr14	92013262	92013263	rs11627901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.12		rs11627901-G	0.447706	2E-10		0.014193849	[0.0098-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1287	chr14	92013262	92013263	rs11627901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.12		rs11627901-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1287	chr14	92021631	92021632	rs1704700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.12	NR	rs1704700-A	0.473351	1E-12		0.013073	[0.0095-0.0167] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1287	chr14	92046701	92046702	rs716872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs716872-?	NR	3E-8	(left accumbens area)			NR [9227495] (imputed)	N
1287	chr14	92046701	92046702	rs716872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.12	NR	rs716872-?	NR	1E-10	(right accumbens area)			NR [9227495] (imputed)	N
1287	chr14	92069488	92069489	rs139134142	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	14q32.12	CATSPERB	rs139134142-A	0.985	5E-6	(AA)	0.49	NR unit decrease	Illumina [NR] (imputed)	N
1287	chr14	92102041	92102042	rs75475571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs75475571-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1288	chr14	92158171	92158172	rs17127497	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA		CATSPERB	rs17127497-A	0.94	2E-6		0.1	[0.061-0.139] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1288	chr14	92167473	92167474	rs117539923	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	14q32.12	CATSPERB	rs117539923-A		4E-6		0.34	[0.2-0.48] unit increase	Illumina [11789982] (imputed)	N
1288	chr14	92191349	92191350	rs3814837	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	14q32.12	CATSPERB	rs3814837-?	0.247	3E-6		1.55521	[1.45-1.66]	NR [~ 2000000] (imputed)	N
1288	chr14	92198243	92198244	rs61988231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs61988231-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1288	chr14	92208120	92208121	rs116920326	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	14q32.12	NR	rs116920326-G		5E-6		0.2435	[0.14-0.35] SD units increase	NR [10700000] (imputed)	N
1288	chr14	92210919	92210920	rs67783323	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	14q32.12	intergenic	rs67783323-G	0.15	2E-6		0.018	NR unit increase	Illumina [1231747]	N
1288	chr14	92214471	92214472	rs551486793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.12		rs551486793-G	NR	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1288	chr14	92235038	92235039	rs57328376	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	14q32.12	CATSPERB	rs57328376-G	0.2993	9E-10		1.0628989	[1.04-1.08]	Affymetrix [up to 34000000] (imputed)	N
1288	chr14	92241351	92241352	rs61269268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	CATSPERB	rs61269268-C	0.17387	2E-28		0.033150546	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1288	chr14	92241351	92241352	rs61269268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.12	CATSPERB	rs61269268-C	0.173861	7E-43		0.040943265	[0.035-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1288	chr14	92243977	92243978	rs74403919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs74403919-A	0.16056	6E-10				Affymetrix, Illumina [24588908] (imputed)	N
1288	chr14	92243977	92243978	rs74403919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.12	NR	rs74403919-A	0.172422	3E-11		0.016277	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1288	chr14	92243977	92243978	rs74403919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs74403919-T	0.830458	2E-49				Affymetrix, Illumina [17210439] (imputed)	N
1288	chr14	92243977	92243978	rs74403919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q32.12	NR	rs74403919-T	0.827171	3E-52		0.038937	[0.034-0.044] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1288	chr14	92245982	92245983	rs61237505	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q32.12	CATSPERB	rs61237505-C	0.1709	9E-16		0.03908895	[0.03-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1288	chr14	92259808	92259809	rs113207090	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	14q32.12	NR	rs113207090-C	NR	4E-7		0.3924	[0.24-0.54] SD units decrease	NR [10700000] (imputed)	N
1288	chr14	92268530	92268531	rs10498631	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	14q32.12	TC2N	rs10498631-?	NR	7E-9	(EA)			Affymetrix, Illumina [13887196] (imputed)	N
1288	chr14	92268530	92268531	rs10498631	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	14q32.12	TC2N	rs10498631-?	NR	2E-8				Affymetrix, Illumina [13887196] (imputed)	N
1289	chr14	92279982	92279983	rs17127600	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q32.12	NR	rs17127600-G	0.171	8E-14		0.00233	[0.0017-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
1289	chr14	92280674	92280675	rs1998136	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	14q32.12		rs1998136-A	0.188	6E-7		0.5		Illumina [5411567] (imputed)	N
1289	chr14	92290743	92290744	rs10498632	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	14q32.12	NR	rs10498632-?	NR	6E-8		0.0576	[0.037-0.078] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1289	chr14	92290743	92290744	rs10498632	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	14q32.12	TCN2	rs10498632-?	NR	5E-18				Affymetrix, Illumina [10537485] (imputed)	N
1289	chr14	92290743	92290744	rs10498632	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	14q32.12	TCN2	rs10498632-?	NR	3E-18	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1289	chr14	92302971	92302972	rs58204830	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	14q32.12	TC2N	rs58204830-A	0.36	6E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1289	chr14	92302971	92302972	rs58204830	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	14q32.12	TC2N	rs58204830-A	0.36	3E-8	(EA)	0.0176	[0.011-0.024] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1289	chr14	92309228	92309229	rs1884841	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	14q32.12	TCN2	rs1884841-A	NR	9E-6		1.05	[NR]	Affymetrix, Illumina [12923718] (imputed)	N
1289	chr14	92318934	92318935	rs4904820	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	14q32.12	TCN2	rs4904820-A	0.47	6E-19		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1289	chr14	92318934	92318935	rs4904820	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	14q32.12	TCN2	rs4904820-A	0.46	8E-18	(EA)	0.0215	[0.017-0.026] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1289	chr14	92318934	92318935	rs4904820	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	14q32.12	TCN2	rs4904820-A	0.49	2E-8		0.014	NR unit increase	Affymetrix, Illumina [13887196] (imputed)	N
1289	chr14	92324457	92324458	rs10467747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs10467747-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1289	chr14	92330227	92330228	rs10129703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q32.12		rs10129703-A	NR	8E-20		0.0274	[0.022-0.033] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1289	chr14	92332867	92332868	rs1548817	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.12	TC2N	rs1548817-?	NR	3E-19		0.038663913	[0.03-0.047] unit increase	Illumina [27896057] (imputed)	N
1289	chr14	92333000	92333001	rs1548818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.12	NR	rs1548818-A	NR	1E-13		0.0234	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1289	chr14	92342796	92342797	rs117055435	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q32.12	FBLN5	rs117055435-T	0.0149148917863564	3E-6	(G_Streptococcus_HB)	1.29728	[0.75-1.84] unit decrease	Illumina [7711310] (imputed)	N
1289	chr14	92356288	92356289	rs2430356	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q32.12	FBLN5	rs2430356-A	0.77	3E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1289	chr14	92359021	92359022	rs2244643	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.12	FBLN5	rs2244643-C	0.6643	1E-12		0.1903	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1289	chr14	92359021	92359022	rs2244643	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q32.12	FBLN5	rs2244643-A		4E-9		0.232	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1289	chr14	92359021	92359022	rs2244643	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q32.12	FBLN5	rs2244643-A		1E-7	(EA)	0.23	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1289	chr14	92359021	92359022	rs2244643	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q32.12	FBLN5	rs2244643-A		4E-14		0.219	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1289	chr14	92359357	92359358	rs2430357	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	14q32.12	FBLN5	rs2430357-T	0.1158	2E-6		0.0531	[0.031-0.075] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1289	chr14	92380671	92380672	rs4904823	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.12	FBLN5	rs4904823-?	NR	3E-7		0.016095158	[0.0099-0.0222] unit decrease	Illumina [27896057] (imputed)	N
1289	chr14	92386378	92386379	rs17732513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q32.12		rs17732513-T	NR	2E-14		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1289	chr14	92391471	92391476	rs149364745	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.12	FBLN5	rs149364745-T	0.4099	3E-15		0.2163	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1290	chr14	92413986	92413987	rs7149187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.12	FBLN5	rs7149187-A	NR	1E-12		0.0219651	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1290	chr14	92421274	92421275	rs2498828	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	14q32.12	FBLN5, TRIP11	rs2498828-T	0.8798	2E-6		0.2341	[0.14-0.33] unit increase	NR [NR] (imputed)	N
1290	chr14	92421274	92421275	rs2498828	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder	10,865 European ancestry female cases, 12,753 European ancestry female controls, 5,105 European ancestry male cases, 12,231 European ancestry male controls	NA	14q32.12	FBLN5, TRIP11	rs2498828-T	0.8798	6E-6	(male)	0.1822	[0.1-0.26] unit decrease	NR [NR] (imputed)	N
1290	chr14	92422213	92422214	rs10142836	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.12	FBLN5	rs10142836-A	0.689809	4E-9		0.0118124	[0.0079-0.0158] unit decrease	NR [13737936] (imputed)	N
1290	chr14	92427221	92427222	rs7153027	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	14q32.12	FBLN5	rs7153027-A	0.74	2E-17		0.049	[0.037-0.061] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1290	chr14	92427221	92427222	rs7153027	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	14q32.12	TRIP11, ATXN3, FBLN5, CPSF2	rs7153027-A	0.52	1E-10		5.7	[3.94-7.46] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1290	chr14	92427347	92427348	rs7154721	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	14q32.12	TRIP11	rs7154721-T	0.573	5E-20		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	14q32.12	TRIP11	rs2160077-A	0.4322	8E-6		0.0172	[0.0098-0.0246] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q32.12	TRIP11	rs2160077-A	0.4322	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q32.12	TRIP11	rs2160077-A	0.4322	2E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q32.12	TRIP11	rs2160077-A	0.4322	7E-8	(men)	0.0264	[0.017-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	14q32.12	TRIP11	rs2160077-A	0.4322	2E-8		0.0196	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q32.12	TRIP11	rs2160077-A	0.4209	4E-8	(EA)	0.0181	[0.012-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1290	chr14	92428409	92428410	rs2160077	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	14q32.12	TRIP11	rs2160077-A	0.4209	3E-8	(EA, men)	0.0264	[0.017-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1290	chr14	92430183	92430184	rs10151561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q32.12		rs10151561-G	NR	1E-87		0.0259	[0.023-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1290	chr14	92430183	92430184	rs10151561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.12	TRIP11	rs10151561-G	NR	1E-13		0.0212789	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1290	chr14	92430830	92430831	rs10129429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs10129429-?	NR	4E-80				NR [~ 8900000] (imputed)	N
1290	chr14	92435064	92435065	rs1133441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q32.12		rs1133441-A	0.421173	7E-60		0.0332248	[0.029-0.037] unit decrease	Illumina [13479295] (imputed)	N
1290	chr14	92435064	92435065	rs1133441	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.12	TRIP11	rs1133441-?	NR	5E-64		0.048701942	[0.043-0.054] unit decrease	Illumina [27896057] (imputed)	N
1290	chr14	92435064	92435065	rs1133441	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.12		rs1133441-?	NR	1E-9		0.0132498	[0.0089-0.0176] unit decrease	Affymetrix [20259828] (imputed)	N
1290	chr14	92435586	92435587	rs12587248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.12	TRIP11	rs12587248-C	NR	2E-10		0.0193577	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1290	chr14	92436579	92436580	rs11160033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs11160033-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1290	chr14	92450383	92450384	rs2295164	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.12	TRIP11	rs2295164-T	0.4652	5E-14		0.0143	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1290	chr14	92459957	92459958	rs8007661	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q32.12	TRIP11	rs8007661-C	0.6098	2E-8	(EA)	0.0239	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1290	chr14	92459957	92459958	rs8007661	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	14q32.12	TRIP11	rs8007661-C	0.6098	1E-6	(EA)	0.0239	[0.014-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1290	chr14	92459957	92459958	rs8007661	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	14q32.12	TRIP11	rs8007661-?	0.6098	1E-6	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1290	chr14	92459957	92459958	rs8007661	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	14q32.12	TRIP11, ATXN3	rs8007661-T	0.3	6E-10		0.42	[0.30-0.54] cm decrease	Affymetrix, Illumina [2260683] (imputed)	N
1290	chr14	92461191	92461192	rs7145052	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.12	TRIP11	rs7145052-T	NR	2E-12		0.0200931	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1290	chr14	92461191	92461192	rs7145052	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q32.12	TRIP11	rs7145052-C	0.549319	4E-9		0.00831269	[0.0056-0.0111] unit decrease	Affymetrix [12370749]	N
1290	chr14	92461191	92461192	rs7145052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q32.12	NR	rs7145052-?	NR	3E-24				Affymetrix [~ 8270000] (imputed)	N
1290	chr14	92461963	92461964	rs34736578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q32.12	TRIP11	rs34736578-CT	0.5404	7E-6		0.0289	[0.016-0.041] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1290	chr14	92462496	92462497	rs10083510	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q32.12	FBLN5, TRIP11, ATXN3	rs10083510-?	NR	3E-7	(African)	0.053	[0.033-0.073] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1290	chr14	92464426	92464427	rs10083447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q32.12		rs10083447-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1290	chr14	92482947	92482948	rs7158300	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	14q32.12	TRIP11	rs7158300-T	0.31	4E-27		0.056	[0.044-0.068] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1290	chr14	92485880	92485881	rs7155279	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	14q32.12	TRIP11	rs7155279-G	NR	8E-7	(adults)	0.024	[0.014-0.034] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1290	chr14	92485880	92485881	rs7155279	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	14q32.12	TRIP11	rs7155279-G	NR	1E-9	(adults)	0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1290	chr14	92485880	92485881	rs7155279	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	14q32.12	TRIP11	rs7155279-T	0.36	1E-10		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1290	chr14	92512142	92512143	rs11160037	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q32.12	TRIP11	rs11160037-A	0.6206	5E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [19819130] (imputed)	N
1290	chr14	92512142	92512143	rs11160037	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	14q32.12	TRIP11	rs11160037-A	0.6206	5E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1290	chr14	92525612	92525613	rs10151945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q32.12		rs10151945-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1290	chr14	92532619	92532620	rs8012666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q32.12	ATXN3	rs8012666-T	NR	1E-11		0.0216019	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1291	chr14	92536958	92536959	rs12588287	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	14q32.12	ATXN3	rs12588287-T	0.83	9E-6	(AA)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1291	chr14	92540380	92540381	rs10143310	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	14q32.12	ATXN3	rs10143310-?	0.2436	3E-7	(EA)	1.09	[1.05-1.12]	Illumina [10031630] (imputed)	N
1291	chr14	92541778	92541779	rs3819779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.12	ATXN3	rs3819779-C	NR	2E-9		0.0215029	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1291	chr14	92544936	92544937	rs34207682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q32.12	ATXN3	rs34207682-C	NR	3E-10		0.023463	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1291	chr14	92556054	92556055	rs17807815	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	14q32.12	ATXN3	rs17807815-?	0.07	6E-6	(CP)	2.38	[1.59-3.57]	Illumina [NR]	N
1291	chr14	92562824	92562825	rs7493524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.12		rs7493524-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1291	chr14	92579415	92579416	rs72707344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q32.12	NR	rs72707344-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1291	chr14	92582654	92582655	rs11160044	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q32.12	NDUFB1	rs11160044-A	0.2086	7E-11		6.531	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1291	chr14	92615741	92615741	rs34016308	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	14q32.12	CPSF2	rs34016308-?	NR	4E-14		1.0764263	[1.06-1.1]	Illumina [13762925] (imputed)	N
1291	chr14	92625902	92625903	rs12896393	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q32.12	TRIP11, ATXN3, NDUFB1, CPSF2	rs12896393-?		4E-24				Affymetrix, Illumina [NR] (imputed)	N
1291	chr14	92625919	92625920	rs117843475	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	14q32.12		rs117843475-C	NR	3E-8		0.377	[0.24-0.51] unit decrease	Affymetrix [509886] (imputed)	N
1291	chr14	92625919	92625920	rs117843475	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	14q32.12	CPSF2	rs117843475-?	NR	6E-9	(male)	3.19687	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1291	chr14	92625919	92625920	rs117843475	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA	14q32.12	CPSF2	rs117843475-?	NR	1E-11		2.42945	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1291	chr14	92636712	92636713	rs1009170	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	14q32.12	SLC24A4, CPSF2	rs1009170-?	0.57	2E-6		2.0	[1.49-2.63]	Affymetrix [832357]	N
1292	chr14	92669797	92669798	rs80194260	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in lacunar ischaemic stroke (modified Rankin score)	992 European and unknown ancestry individuals	NA	14q32.12	CPSF2	rs80194260-A	0.25	8E-6		3.88	[3.29-4.47]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1292	chr14	92672883	92672884	rs536796893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs536796893-?	NR	3E-52				NR [~ 8900000] (imputed)	N
1292	chr14	92687625	92687626	rs139859695	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	14q32.12		rs139859695-A	0.005376	4E-9		0.17	[0.11-0.23] unit increase	NR [11842647] (imputed)	N
1292	chr14	92688679	92688680	rs1312663	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	14q32.12	TRIP11, ATXN3, NDUFB1, CPSF2, SLC24A4	rs1312663-?	NR	4E-7	(African)	0.691	[0.43-0.95] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1292	chr14	92697911	92697912	rs189434316	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (normal cytogenetics)	193 European ancestry cases, 3027 European ancestry controls	NA	14q32.12	CPSF2, SLC24A4	rs189434316-T	0.07	6E-9		3.7	[2.5-6.2]	Illumina [~ 8500000] (imputed)	N
1292	chr14	92697911	92697912	rs189434316	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (hyperdiploid negative)	410 European ancestry cases, 3027 European ancestry controls	NA	14q32.12	SLC24A4, CPSF2	rs189434316-T	NR	2E-6				Illumina [~ 8500000] (imputed)	N
1292	chr14	92697911	92697912	rs189434316	29296818	Clay-Gilmour AI	2017-09-08	Blood Adv	Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex.	B cell acute lymphoblastic leukaemia (Philadelphia chromosome negative)	333 European ancestry cases, 3,027 European ancestry controls	NA	14q32.12	CPSF2, SLC24A4	rs189434316-T	NR	3E-6				Illumina [~ 8500000] (imputed)	N
1292	chr14	92702595	92702596	rs1741439	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.12	CPSF2	rs1741439-A	0.0050	3E-6	(Amylin )	0.04	[NR] pM increase	Illumina [899892]	N
1292	chr14	92719755	92719756	rs74529144	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	14q32.12	RP11-472N19.3	rs74529144-A	0.0025	3E-6		0.4389	[0.25-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1292	chr14	92726293	92726294	rs75433889	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q32.12	SLC24A4	rs75433889-T	0.06872	9E-13		1.109	NR	Affymetrix [9154080] (imputed)	N
1292	chr14	92743582	92743583	rs146132542	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	14q32.12		rs146132542-A	0.007414	1E-24		0.28	[0.23-0.33] unit decrease	NR [11842647] (imputed)	N
1292	chr14	92743582	92743583	rs146132542	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	14q32.12		rs146132542-A	0.006268	8E-29		0.48	[0.4-0.56] unit increase	NR [11842647] (imputed)	N
1292	chr14	92754353	92754354	rs139844049	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	14q32.12		rs139844049-C	0.00608	2E-15		0.35	[0.26-0.44] unit increase	NR [11842647] (imputed)	N
1292	chr14	92759372	92759373	rs6575242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs6575242-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1292	chr14	92763390	92763391	rs4900109	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	14q32.12	SLC324A4	rs4900109-G		8E-21	(Pigmented Ring)	0.17	[0.13-0.21] unit increase	Illumina [274604] (imputed)	N
1292	chr14	92773662	92773663	rs12896399	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	14q32.12	LOC105370627	rs12896399-?		3E-8	(Hair color)	0.09375	[0.061-0.127] unit increase	Illumina [9499600] (imputed)	N
1292	chr14	92773662	92773663	rs12896399	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	14q32.12	SLC24A4	rs12896399-G	NR	2E-36		0.16	[0.14-0.18] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
1292	chr14	92773662	92773663	rs12896399	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	14q32.12	SLC24A4	rs12896399-G	NR	4E-11	(Blue eye color)	0.33	[0.23-0.43] unit increase	Affymetrix, Illumina [2469762] (imputed)	N
1292	chr14	92773662	92773663	rs12896399	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	14q32.12	SLC24A4	rs12896399-G	NR	3E-7	(Intermediate/Green eye color)	0.27	[0.17-0.37] unit decrease	Affymetrix, Illumina [2469762] (imputed)	N
1292	chr14	92773662	92773663	rs12896399	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	14q32.12	SLC24A4	rs12896399-T	0.44	5E-13	(hair color)	0.31	[NR] unit decrease	Illumina [535076]	N
1292	chr14	92773662	92773663	rs12896399	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	14q32.12	SLC24A4	rs12896399-T	0.44	1E-16	(eye color)	0.34	[NR] unit decrease	Illumina [535076]	N
1292	chr14	92773662	92773663	rs12896399	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	14q32.12	SLC24A4	rs12896399-G	0.44	2E-23	(green eyes)	1.73	[NR]	Illumina [535076]	N
1292	chr14	92773662	92773663	rs12896399	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	14q32.12	SLC24A4	rs12896399-G	NR	8E-21		0.18	[0.14-0.22] hair color score increase	Illumina [528173]	N
1292	chr14	92773662	92773663	rs12896399	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	14q32.12	SLC24A4	rs12896399-T	0.40	4E-38		2.06	[1.76-2.42]	Illumina [317511]	N
1292	chr14	92773662	92773663	rs12896399	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	14q32.12	SLC24A4	rs12896399-T	0.44	1E-48		2.56	[2.12-3.09]	Illumina [317511]	N
1292	chr14	92773902	92773903	rs12896471	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	14q32.12		rs12896471-C	NR	1E-30		0.476792	[0.4-0.56] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1292	chr14	92776824	92776825	rs941799	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q32.12	LOC105370627	rs941799-T	0.4533	2E-308		1.662	NR	Affymetrix [9154080] (imputed)	N
1292	chr14	92777461	92777462	rs1885194	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	14q32.12	NR	rs1885194-C	NR	1E-12		0.061	[0.016-0.106] unit increase	Affymetrix [8351141] (imputed)	N
1292	chr14	92780386	92780387	rs17184180	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	14q32.12		rs17184180-T	0.567	1E-284	(EA)	0.271	[0.26-0.29] unit increase	Illumina [11532091] (imputed)	N
1292	chr14	92780386	92780387	rs17184180	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	14q32.12	SLC24A4	rs17184180-A	0.442	1E-100		0.181	[0.18-0.19] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
1292	chr14	92784008	92784009	rs113945026	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	14q32.12		rs113945026-C	0.004295	4E-12		0.25	[0.18-0.32] unit decrease	NR [11842647] (imputed)	N
1292	chr14	92784008	92784009	rs113945026	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	14q32.12		rs113945026-C	0.003651	2E-19		0.5	[0.39-0.61] unit increase	NR [11842647] (imputed)	N
1292	chr14	92784405	92784406	rs75030936	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	14q32.12		rs75030936-T	0.002564	4E-13		0.34	[0.25-0.43] unit decrease	NR [11842647] (imputed)	N
1292	chr14	92789204	92789205	rs4144266	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	14q32.12	CPSF2, SLC24A4	rs4144266-?	NR	4E-21		0.036	[0.043-0.028] unit decrease	Illumina [12039491] (imputed)	N
1292	chr14	92790076	92790077	rs12883151	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	14q32.12	SLC24A4	rs12883151-G	0.4553	3E-128		1.355	NR	Affymetrix [9154080] (imputed)	N
1292	chr14	92791478	92791479	rs78598185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs78598185-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1292	chr14	92793205	92793206	rs77004437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	14q32.12	NR	rs77004437-T	NR	3E-10		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1292	chr14	92795911	92795912	rs4904871	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA		SLC24A4	rs4904871-A	0.435941	2E-278				Affymetrix, Illumina [NR] (imputed)	N
1293	chr14	92800003	92800004	rs8014907	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	14q32.12	SLC24A4	rs8014907-?	0.822	3E-10		1.4228799	[1.32-1.53]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1293	chr14	92800003	92800004	rs8014907	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	14q32.12	SLC24A4	rs8014907-?	0.822	3E-9		1.3770311	[1.27-1.48]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1293	chr14	92800003	92800004	rs8014907	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	14q32.12	SLC24A4	rs8014907-?	0.178	3E-10		1.4317	[1.32-1.54]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1293	chr14	92802559	92802560	rs11621581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs11621581-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1293	chr14	92816328	92816329	rs12890844	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	14q32.12	SLC24A4	rs12890844-G	NR	2E-6		0.151	[0.088-0.214] unit increase	Illumina [5527232] (imputed)	N
1293	chr14	92835972	92835973	rs35778179	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B salivarius abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.12		rs35778179-T	0.050584	2E-8		0.10339	[0.067-0.14] unit increase	Illumina [7980478] (imputed)	N
1293	chr14	92844369	92844370	rs4904886	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q32.12	SLC24A4	rs4904886-A	0.3211	1E-9		1.052	NR	Affymetrix [9154080] (imputed)	N
1293	chr14	92866904	92866905	rs10133804	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	14q32.12	NR	rs10133804-C	NR	2E-6	(Hispanic)	1.44	[-3.58-6.45] unit increase	Affymetrix [14000000] (imputed)	N
1293	chr14	92876002	92876003	rs28671668	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	14q32.12	SLC24A4	rs28671668-T	NR	5E-6		0.0915208	[0.052-0.131] unit increase	Illumina [at least 950000] (imputed)	N
1293	chr14	92882825	92882826	rs17128291	32755526	D'Urso S	2020-08-05	Twin Res Hum Genet	Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.	Septic shock resolution	459 European ancestry cases, 34 European ancestry controls	NA	14q32.12	SLC24A4	rs17128291-A	0.82	7E-7		4.5454545	NR	Illumina [7590211] (imputed)	N
1293	chr14	92885335	92885336	rs146453956	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	14q32.12		rs146453956-A	0.005656	3E-10		0.29	[0.2-0.38] unit decrease	NR [11842647] (imputed)	N
1293	chr14	92898587	92898588	rs75263396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs75263396-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1293	chr14	92926951	92926952	rs10498633	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	14q32.12	SLC2A4A, RIN3	rs10498633-?	NR	1E-6		1.0869565	[1.05-1.14]	Affymetrix [up to 7055881] (imputed)	N
1293	chr14	92926951	92926952	rs10498633	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	14q32.12	SLC24A4, RIN3	rs10498633-T	NR	2E-7		5.17	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1293	chr14	92926951	92926952	rs10498633	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	14q32.12	SLC24A4, RIN3	rs10498633-T	NR	1E-7		5.3	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1293	chr14	92926951	92926952	rs10498633	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	14q32.12	SLC24A4	rs10498633-G	0.78	4E-7		1.1494253	[1.09-1.22]	NR [NR]	N
1293	chr14	92926951	92926952	rs10498633	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q32.12	SLC24A4, RIN3	rs10498633-G	0.783	6E-9		1.0989	[1.06-1.14]	Illumina [7055881] (imputed)	N
1294	chr14	92931877	92931878	rs61977313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	SLC24A4	rs61977313-T	0.100795	3E-14		0.028673826	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1294	chr14	92932827	92932828	rs12881735	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	14q32.12	NR	rs12881735-?	NR	2E-8				Affymetrix [7795605] (imputed)	N
1294	chr14	92936689	92936690	rs8008388	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	14q32.12	NR	rs8008388-?	NR	2E-6				Affymetrix [7795605] (imputed)	N
1294	chr14	92936689	92936690	rs8008388	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	14q32.12	NR	rs8008388-?	NR	6E-11				Affymetrix [7795605] (imputed)	N
1294	chr14	92938854	92938855	rs12590654	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	14q32.12		rs12590654-A	0.3451	6E-9		44.299038	z score increase	NR [6814003]	N
1294	chr14	92938854	92938855	rs12590654	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	14q32.12		rs12590654-?	NR	7E-17				Illumina [NR] (imputed)	N
1294	chr14	92938854	92938855	rs12590654	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	14q32.12	SLC24A4	rs12590654-A	NR	4E-6		4.628	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1294	chr14	92938854	92938855	rs12590654	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	14q32.12	SLC24A4	rs12590654-A	0.344	2E-10		6.39	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1294	chr14	92938854	92938855	rs12590654	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	14q32.12	SLC24A4	rs12590654-A	NR	2E-8		5.614125	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1294	chr14	92938854	92938855	rs12590654	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	14q32.12	NR	rs12590654-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1294	chr14	92946782	92946783	rs4347561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	SLC24A4	rs4347561-A	0.146273	2E-9		0.019599095	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr14	92955384	92955385	rs17783630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs17783630-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1294	chr14	92955384	92955385	rs17783630	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q32.12	SLC24A4	rs17783630-A	0.441	9E-15		1.062	NR	Affymetrix [9154080] (imputed)	N
1294	chr14	92972161	92972162	rs4904947	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	14q32.12	SLC24A4, RIN3	rs4904947-?	0.05	8E-6		1.9	[1.43-2.52]	Affymetrix [832357]	N
1294	chr14	92978297	92978298	rs140514603	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	14q32.12	RIN3	rs140514603-?		3E-6		25.0	[6.25-100]	Illumina [NR] (imputed)	N
1294	chr14	93012624	93012625	rs61409971	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	14q32.12	RIN3	rs61409971-A	0.3359	1E-10		0.02464388	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1294	chr14	93013882	93013883	rs117324075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.12		rs117324075-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q32.12		rs61975764-A	NR	1E-16		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	14q32.12		rs61975764-G	0.534	1E-12				Affymetrix [10369434] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Proximal colorectal cancer	15,706 European ancestry cases, 64,159 European ancestry controls	NA	14q32.12	RIN3	rs61975764-G	0.553	3E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [11437803] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q32.12	RIN3	rs61975764-A	0.465149	1E-17		0.01908434	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.12	RIN3	rs61975764-A	0.465117	3E-23		0.022157153	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs61975764-A	0.39519	7E-31				Affymetrix, Illumina [19872809] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q32.12	NR	rs61975764-A	0.465184	3E-31		0.023235	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1294	chr14	93014928	93014929	rs61975764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.12		rs61975764-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1294	chr14	93015393	93015394	rs10131197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q32.12	RIN3	rs10131197-G	0.334547	4E-9		0.013877272	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1294	chr14	93015393	93015394	rs10131197	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	14q32.12	RIN3	rs10131197-G	0.33	5E-11				NR [> 9500000] (imputed)	N
1294	chr14	93015478	93015479	rs10131290	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	14q32.12	RIN3	rs10131290-C	0.32987599999999995	2E-10		1.0414252	[1.02847538109455-1.05453819620849]	NR [9572556] (imputed)	N
1294	chr14	93024461	93024462	rs11626205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	14q32.12		rs11626205-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1294	chr14	93027165	93027166	rs56098450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q32.12	RIN3	rs56098450-A	0.0980180000000001	4E-9		0.022347111	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1294	chr14	93027165	93027166	rs56098450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q32.12	RIN3	rs56098450-A	0.0980180000000001	5E-16		0.03075464	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1294	chr14	93043377	93043378	rs7154653	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs7154653-?		2E-7	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93044667	93044668	rs7160376	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs7160376-?		4E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93044667	93044668	rs7160376	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs7160376-?		2E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93044683	93044684	rs7159925	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs7159925-?		4E-6	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93046642	93046643	rs12587266	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs12587266-?		4E-7	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93047332	93047333	rs6575267	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs6575267-?		4E-7	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93047332	93047333	rs6575267	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	14q32.12	NR	rs6575267-?		2E-7	(EA)			Illumina [~ 5190000] (imputed)	N
1294	chr14	93047454	93047455	rs1885747	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	14q32.12	RIN3, LGMN	rs1885747-?		5E-6	(Additive)	1.4	[1.20-1.70]	Illumina [5600610] (imputed)	N
1295	chr14	93069979	93069980	rs72697295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	14q32.12	NR	rs72697295-C	0.180908	8E-11		0.017529	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1295	chr14	93069979	93069980	rs72697295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72697295-C	0.157	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93069988	93069989	rs72697297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q32.12		rs72697297-T	0.82	6E-11				NR [NR] (imputed)	N
1295	chr14	93069988	93069989	rs72697297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q32.12		rs72697297-T	0.82	8E-15		0.015	% increase	NR [NR] (imputed)	N
1295	chr14	93069988	93069989	rs72697297	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72697297-T	0.843	1E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93070285	93070286	rs78440108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q32.12	NR	rs78440108-C	0.820422	6E-21		0.023796	[0.019-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1295	chr14	93070285	93070286	rs78440108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs78440108-T	0.176295	2E-9				Affymetrix, Illumina [19905671] (imputed)	N
1295	chr14	93071535	93071536	rs77503186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs77503186-A	0.158	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93071805	93071806	rs72699804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72699804-A	0.842	1E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93072151	93072152	rs75662783	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs75662783-A	0.158	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93072268	93072269	rs2146498	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	14q32.12	NR	rs2146498-?		2E-7	(CDH1)	0.2172	[NR] unit decrease	Illumina [NR]	N
1295	chr14	93072316	93072317	rs35629566	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q32.12	RIN3	rs35629566-C	0.8276	2E-10		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1295	chr14	93072316	93072317	rs35629566	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs35629566-C	0.842	1E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93072475	93072476	rs75070309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs75070309-A	0.158	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93074446	93074447	rs79596128	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs79596128-T	0.156	8E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93077610	93077611	rs72699818	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	14q32.12	RIN3	rs72699818-C	0.1827	8E-14		0.03466629	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93077610	93077611	rs72699818	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q32.12	RIN3	rs72699818-C	0.1825	4E-13		0.03365624	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93077610	93077611	rs72699818	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72699818-T	0.844	7E-8		0.015	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93078332	93078333	rs112370326	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs112370326-C	0.158	9E-8		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93078532	93078533	rs9788533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.12	RIN3	rs9788533-G	NR	5E-9		0.0173127	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1295	chr14	93083371	93083372	rs10146142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	14q32.12	RIN3	rs10146142-T	NR	3E-8		0.0183139	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1295	chr14	93083571	93083572	rs10146346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.12	RIN3	rs10146346-A	NR	4E-10		0.0188352	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1295	chr14	93086917	93086918	rs8010344	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs8010344-A	0.844	2E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93088099	93088100	rs149187226	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (28-day mortality)	210 European ancestry cases, 1,827 European ancestry controls	NA	14q32.12	RIN3	rs149187226-G	0.99	4E-8		0.35	[0.22-0.48] unit decrease	NR [NR]	N
1295	chr14	93094297	93094298	rs7141996	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.12	NR	rs7141996-A	0.1839	3E-8				NR [9056863] (imputed)	N
1295	chr14	93094297	93094298	rs7141996	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs7141996-A	0.156	3E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93096390	93096391	rs11623779	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs11623779-T	0.363	2E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs11621587-C	0.176954	1E-35				Affymetrix, Illumina [24649327] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs11621587-C	0.177471	1E-30				Affymetrix, Illumina [23114412] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	14q32.12	RIN3	rs11621587-C	0.1821	1E-32		0.0363	[0.03-0.042] unit increase	Affymetrix [19819130] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	14q32.12	RIN3	rs11621587-C	0.1821	1E-29		0.0343	[0.028-0.04] unit increase	Affymetrix [19819130] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q32.12		rs11621587-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1295	chr14	93098338	93098339	rs11621587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs11621587-C	0.159	1E-7		0.014	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93098616	93098617	rs72699846	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72699846-A	0.156	3E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93099233	93099234	rs11627441	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs11627441-A	0.162	4E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93099866	93099867	rs4904964	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	14q32.12		rs4904964-C	NR	2E-8		0.116715	[0.076-0.158] unit decrease	NR [2787054] (imputed)	N
1295	chr14	93100023	93100024	rs7146689	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs7146689-T	0.823	2E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93102250	93102251	rs17184313	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q32.12	RIN3	rs17184313-T	0.1744	2E-11		0.0029	[0.0019-0.0039] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1295	chr14	93102250	93102251	rs17184313	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs17184313-T	0.648	1E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93103308	93103309	rs10498635	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	14q32.12		rs10498635-T	0.1793	1E-8		0.11441311	[0.074-0.155] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1295	chr14	93103308	93103309	rs10498635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q32.12	NR	rs10498635-T	0.18322	7E-39		0.031169	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1295	chr14	93103308	93103309	rs10498635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q32.12	NR	rs10498635-T	0.183683	9E-34		0.030199	[0.025-0.035] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1295	chr14	93103308	93103309	rs10498635	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs10498635-T	0.352	3E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93103308	93103309	rs10498635	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	14q32.12	RIN3	rs10498635-C	0.82	3E-11		1.44	[1.29-1.60]	Illumina [2487078] (imputed)	N
1295	chr14	93103728	93103729	rs7143806	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.12		rs7143806-?	NR	7E-28				NR [~ 8900000] (imputed)	N
1295	chr14	93103728	93103729	rs7143806	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs7143806-A	0.165	9E-8		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.12	NR	rs11627032-C	0.2529	2E-8				NR [9056863] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q32.12		rs11627032-T	NR	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.12	RIN3	rs11627032-T	0.75	4E-11	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	14q32.12	NR	rs11627032-T	0.75	2E-6		1.0526316	[1.01-1.09] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	14q32.12	RIN3	rs11627032-T	0.74	1E-6		1.0638298		Affymetrix, Illumina [~ 14000000] (imputed)	N
1295	chr14	93104071	93104072	rs11627032	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	14q32.12	RIN3	rs11627032-T	0.74	4E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1295	chr14	93105952	93105953	rs72699855	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	14q32.12	RIN3	rs72699855-G	0.81	5E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
1295	chr14	93105952	93105953	rs72699855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72699855-C	0.162	2E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93108130	93108131	rs1075472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs1075472-A	0.814538	8E-19				Affymetrix, Illumina [17210439] (imputed)	N
1295	chr14	93108130	93108131	rs1075472	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	14q32.12	MAP2	rs1075472-?		2E-9				NR [7428630] (imputed)	N
1295	chr14	93108130	93108131	rs1075472	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	14q32.12	NR	rs1075472-?		7E-9				NR [7428630] (imputed)	N
1295	chr14	93108130	93108131	rs1075472	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs1075472-A	0.839	9E-8		0.013	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93108463	93108464	rs734206	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q32.12	RIN3	rs734206-T	0.71	1E-8		5.7	z-score increase	Affymetrix [4311822] (imputed)	N
1295	chr14	93111119	93111120	rs11624512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	14q32.12	RIN3	rs11624512-T	0.1921	8E-14		0.03407996	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93111119	93111120	rs11624512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q32.12	RIN3	rs11624512-T	0.192	4E-14		0.03426759	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93111119	93111120	rs11624512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	14q32.12	RIN3	rs11624512-T	0.1921	4E-15		0.03593142	[0.027-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93111119	93111120	rs11624512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	14q32.12	RIN3	rs11624512-T	0.1921	2E-13		0.03341726	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93111119	93111120	rs11624512	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs11624512-T	0.166	2E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93111714	93111715	rs78242330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.12	RIN3	rs78242330-C	NR	1E-8		0.0279134	[0.018-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1295	chr14	93111714	93111715	rs78242330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	14q32.12	RIN3	rs78242330-C	NR	2E-8		0.0302503	[0.02-0.041] unit decrease	Affymetrix [323858] (imputed)	N
1295	chr14	93111714	93111715	rs78242330	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs78242330-T	0.918	3E-6		0.019	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93112101	93112102	rs11160085	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	14q32.12	RIN3	rs11160085-T	0.7034	9E-10		0.1398	[0.095-0.184] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1295	chr14	93112310	93112311	rs578113254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.12	RIN3	rs578113254-A	0.164228	7E-15		0.024121454	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1295	chr14	93112923	93112924	rs112560164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q32.12		rs112560164-A	NR	5E-19		0.0263	[0.021-0.032] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1295	chr14	93112923	93112924	rs112560164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.12	RIN3	rs112560164-A	0.1912	3E-14		0.03535423	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93112923	93112924	rs112560164	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs112560164-A	0.163	2E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93113546	93113547	rs7151531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.12	RIN3	rs7151531-C	NR	9E-9		0.0184624	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	14q32.12		rs72699866-A	NR	3E-11		0.195158	[0.14-0.25] unit decrease	NR [5054572] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q32.12	NR	rs72699866-A	0.190988	2E-20		0.0806894	[0.064-0.098] unit increase	Affymetrix [17914406] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	14q32.12	NR	rs72699866-G	0.8247	1E-8		0.0994	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	14q32.12	RIN3	rs72699866-A	0.1917	3E-13		0.03337944	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	14q32.12	RIN3	rs72699866-A	0.1918	9E-12		0.03111597	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93114786	93114787	rs72699866	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs72699866-A	0.162	1E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93115409	93115410	rs754388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	14q32.12	RIN3	rs754388-G	NR	1E-11		0.027936	[0.02-0.036] unit decrease	Affymetrix [323858] (imputed)	N
1295	chr14	93115409	93115410	rs754388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q32.12	RIN3	rs754388-G	0.188924	1E-20		0.026562894	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1295	chr14	93115409	93115410	rs754388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs754388-C	0.812622	9E-34				Affymetrix, Illumina [23467995] (imputed)	N
1295	chr14	93115409	93115410	rs754388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	14q32.12	NR	rs754388-C	0.810895	6E-36		0.030305	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1295	chr14	93115409	93115410	rs754388	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	14q32.12	RIN3	rs754388-?	NR	1E-11				Affymetrix [up to 7325140] (imputed)	N
1295	chr14	93115409	93115410	rs754388	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	14q32.12	Intergenic	rs754388-G	0.18	3E-8				Illumina [2276811] (imputed)	N
1295	chr14	93115409	93115410	rs754388	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	14q32.12	Intergenic	rs754388-G	0.18	3E-6		0.0862	[NR] unit decrease	Illumina [2276811] (imputed)	N
1295	chr14	93115409	93115410	rs754388	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	14q32.12	RIN3	rs754388-C	0.82	5E-14		1.15	[1.11,1.20]	Affymetrix, Illumina [NR] (imputed)	N
1295	chr14	93115409	93115410	rs754388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs754388-C	0.829	6E-9		0.014	unit decrease	Illumina [NR] (imputed)	N
1295	chr14	93115409	93115410	rs754388	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	14q32.12	RIN3	rs754388-C	NR	1E-6		1.29	[NR]	Illumina [NR] (imputed)	N
1295	chr14	93115409	93115410	rs754388	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	14q32.12	RIN3	rs754388-C		3E-7	(Severe Centrilobular)			Illumina [6942916] (imputed)	N
1295	chr14	93115409	93115410	rs754388	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	14q32.12	RIN3	rs754388-C		2E-7	(Moderate Centrilobular)			Illumina [6942916] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	14q32.12	RIN3	rs754388-C	NR	5E-8	(EA)	0.1219	[0.078-0.166] unit increase	Illumina [~ 2500000] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	14q32.12	RIN3	rs754388-C	0.82	3E-9		0.12	[0.081-0.159] unit increase	Illumina [~ 2500000] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	14q32.12	RIN3	rs754388-C	NR	2E-9	(EA)	0.1351	[0.091-0.179] unit increase	Illumina [~ 2500000] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	14q32.12	RIN3	rs754388-C	0.82	1E-10		0.13	[0.091-0.169] unit increase	Illumina [~ 2500000] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	14q32.12	RIN3	rs754388-C	0.83	7E-8				Illumina [up to 701491] (imputed)	N
1295	chr14	93115409	93115410	rs754388	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	14q32.12	RIN3	rs754388-C	0.83	5E-9				Illumina [up to 701491] (imputed)	N
1295	chr14	93116350	93116351	rs72699870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q32.12		rs72699870-C	NR	1E-15		0.0235	[0.018-0.029] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1295	chr14	93116350	93116351	rs72699870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q32.12	RIN3	rs72699870-C	0.195085	8E-22		0.026930885	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1295	chr14	93116350	93116351	rs72699870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q32.12	RIN3	rs72699870-C	0.19512	5E-16		0.022775374	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1295	chr14	93117428	93117429	rs942064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	RIN3	rs942064-C	0.67602	7E-11		0.016710013	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1295	chr14	93117442	93117443	rs7153192	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	14q32.12	RIN3	rs7153192-G	NR	2E-9		0.0194393	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1295	chr14	93118037	93118038	rs3829947	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	14q32.12	RIN3	rs3829947-A	0.45	5E-7		1.05	[1.03 -1.07]	Illumina [at least 109036]	N
1295	chr14	93118228	93118229	rs117068593	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.12		rs117068593-T	0.19	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q32.12		rs117068593-T	NR	5E-17		0.0255	[0.02-0.031] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q32.12		rs117068593-T	NR	4E-28		0.0346	[0.029-0.041] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q32.12		rs117068593-T	NR	1E-18		0.0268	[0.021-0.033] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.12	RIN3	rs117068593-T	NR	6E-11		0.0244958	[0.017-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.12	RIN3	rs117068593-T	0.1895	9E-62		0.0403	[0.036-0.045] unit increase	Affymetrix [18391927] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	14q32.12	RIN3	rs117068593-T	0.19	2E-33		0.04	[0.034-0.046] unit increase	Affymetrix [18391927] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	14q32.12	RIN3	rs117068593-T	0.19	6E-34		0.04	[0.032-0.048] unit increase	Affymetrix [18391927] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.12	RIN3	rs117068593-T	0.189251	4E-13		0.021840794	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.12	RIN3	rs117068593-T	0.189459	5E-24		0.029191256	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	RIN3	rs117068593-T	0.189469	4E-14		0.02321931	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.12	RIN3	rs117068593-T	0.189276	6E-14		0.021317586	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	14q32.12	ADAMTS19, KIAA1024L	rs117068593-?		1E-9				NR [7428630] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.12		rs117068593-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	14q32.12	RIN3	rs117068593-C	NR	8E-8	(adults)	0.033	[0.021-0.045] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	14q32.12	RIN3	rs117068593-C	NR	2E-8	(adults)	0.035	[0.023-0.047] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs117068593-T	0.168	2E-8		0.015	unit increase	Illumina [NR] (imputed)	N
1295	chr14	93118228	93118229	rs117068593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	RIN3	rs117068593-T	0.169	3E-6		0.06	NR unit increase	Illumina [NR] (imputed)	N
1295	chr14	93118668	93118669	rs3742716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.12	RIN3	rs3742716-A	0.324986	3E-9		0.0148507245	[0.0099-0.0198] unit increase	Affymetrix [93095623] (imputed)	N
1295	chr14	93118668	93118669	rs3742716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	14q32.12	RIN3	rs3742716-A	0.325	3E-12		0.0266721	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1295	chr14	93131569	93131570	rs112337562	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	14q32.12	NR	rs112337562-G	NR	3E-6		0.37	[0.21-0.53] SD units increase	NR [10700000] (imputed)	N
1295	chr14	93132079	93132080	rs12590630	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.12	RIN3	rs12590630-C	0.3038	1E-10		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
1295	chr14	93142860	93142861	rs147042536	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	14q32.12		rs147042536-?	NR	7E-9		0.0764047	[0.05-0.103] unit decrease	NR [9800000] (imputed)	N
1295	chr14	93142860	93142861	rs147042536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q32.12	RIN3	rs147042536-C	0.00575599999999998	2E-9		0.08807968	[0.059-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
1296	chr14	93200598	93200599	rs13379303	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	14q32.12	LGMN	rs13379303-?	NR	4E-8	(VLDL_C)	0.08185774	NR unit increase	Illumina [609262]	N
1296	chr14	93223989	93223990	rs7160685	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.12	NR	rs7160685-C	0.700909354954955	8E-6	(IGP20)	0.1565	[0.088-0.225] unit increase	Illumina [~ 2500000] (imputed)	N
1296	chr14	93224206	93224207	rs7140705	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.12	LGMN	rs7140705-T	0.9134375	4E-9	(LGMN, 7840_64_3)	0.26774976	[0.18-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1297	chr14	93354154	93354155	rs79116747	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	14q32.12	Intergenic	rs79116747-T	NR	3E-6	(women)	0.177912	[0.1-0.25] unit increase	Illumina [13520550] (imputed)	N
1297	chr14	93399049	93399050	rs9658667	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHGA	5,368 Icelandic ancestry individuals	NA	14q32.12		rs9658667-A	0.02502	2E-39		0.759973	[0.65-0.87] unit increase	Illumina [7506463] (imputed)	N
1297	chr14	93399049	93399050	rs9658667	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHGA	5,367 Icelandic ancestry individuals	NA	14q32.12		rs9658667-A	0.02502	6E-20		0.544679	[0.43-0.66] unit increase	Illumina [7506463] (imputed)	N
1297	chr14	93399049	93399050	rs9658667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.12	CHGA	rs9658667-G	0.98390625	6E-14	(CHGA, 11184_51_3)	0.71273804	[0.53-0.9] unit decrease	Illumina [> 1000000] (imputed)	N
1297	chr14	93399049	93399050	rs9658667	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.12	CHGA	rs9658667-G	0.98390625	1E-7	(CHGA, 8476_11_3)	0.5114224	[0.32-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
1297	chr14	93399100	93399101	rs729940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHGA	5,368 Icelandic ancestry individuals	NA	14q32.12		rs729940-T	0.1476	6E-29		0.290119	[0.24-0.34] unit decrease	Illumina [7506463] (imputed)	N
1297	chr14	93399100	93399101	rs729940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHGA	5,367 Icelandic ancestry individuals	NA	14q32.12		rs729940-T	0.1476	1E-19		0.24197	[0.19-0.29] unit decrease	Illumina [7506463] (imputed)	N
1297	chr14	93405675	93405676	rs57481308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q32.12		rs57481308-C	NR	1E-12		0.0127	[0.0092-0.0162] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1297	chr14	93406231	93406232	rs7156335	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.12	CHGA	rs7156335-T	0.9088	4E-18		0.0293	[0.023-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1297	chr14	93406231	93406232	rs7156335	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.12	ITPK1	rs7156335-?	NR	2E-12		0.036527425	[0.026-0.047] unit increase	Illumina [27896057] (imputed)	N
1297	chr14	93406231	93406232	rs7156335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs7156335-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1297	chr14	93407133	93407134	rs35502373	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q32.12	ITPK1	rs35502373-T	0.0773571577987853	4E-8	(G_Coprococcus_HB)	0.77319	[0.5-1.05] unit decrease	Illumina [7711310] (imputed)	N
1297	chr14	93407300	93407301	rs13316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q32.12		rs13316-A	NR	1E-8		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1297	chr14	93412030	93412031	rs4905014	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	14q32.12	NR	rs4905014-?	NR	9E-15				Affymetrix [NR]	N
1297	chr14	93412030	93412031	rs4905014	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	14q32.12	NR	rs4905014-?	NR	5E-16				Affymetrix [NR]	N
1298	chr14	93501025	93501026	rs8006385	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	14q32.12	ITPK1	rs8006385-G	NR	1E-10		3.587	[2.49-4.68] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1298	chr14	93503385	93503386	rs12894780	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	14q32.12	NR	rs12894780-C	0.14	1E-8			[NR]	Affymetrix [9886854] (imputed)	N
1298	chr14	93503385	93503386	rs12894780	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	14q32.12	NR	rs12894780-C	0.14	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
1298	chr14	93503385	93503386	rs12894780	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	14q32.12	NR	rs12894780-C	0.14	4E-8			[NR]	Affymetrix [9886854] (imputed)	N
1298	chr14	93503385	93503386	rs12894780	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	14q32.12	NR	rs12894780-C	0.14	1E-7		1.1	[1.06-1.14]	Affymetrix [9886854] (imputed)	N
1298	chr14	93503385	93503386	rs12894780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.12		rs12894780-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1298	chr14	93511640	93511641	rs35584079	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	14q32.12	ITPK1	rs35584079-A	0.14	2E-8	(conditional on rs72699855)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1298	chr14	93511784	93511785	rs28688110	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	14q32.12	ITPK1	rs28688110-?	NR	9E-11		0.0719	NR L decrease	Affymetrix [9390170] (imputed)	N
1298	chr14	93511784	93511785	rs28688110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q32.12	NR	rs28688110-T	0.110589	5E-11		0.020679	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.12		rs36084521-G	NR	4E-28		0.0344	[0.028-0.04] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.12	ITPK1	rs36084521-G	0.110567	3E-10		0.022232305	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.12	ITPK1	rs36084521-G	0.110725	1E-35		0.04488054	[0.038-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.12	ITPK1	rs36084521-G	0.110713	6E-23		0.03544749	[0.028-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.12		rs36084521-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1298	chr14	93516397	93516398	rs36084521	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.12	ITPK1	rs36084521-G	0.1097	2E-12		0.04147957	[0.03-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1298	chr14	93516464	93516465	rs2180369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q32.12		rs2180369-C	0.088032	2E-8		0.0327307	[0.021-0.044] unit increase	Illumina [13478928] (imputed)	N
1298	chr14	93516464	93516465	rs2180369	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.12		rs2180369-T	0.889	5E-11				Affymetrix [10369434] (imputed)	N
1298	chr14	93516464	93516465	rs2180369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs2180369-C	0.108626	9E-40				Affymetrix, Illumina [24588908] (imputed)	N
1298	chr14	93516464	93516465	rs2180369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.12	NR	rs2180369-C	0.110868	1E-38		0.03977	[0.034-0.046] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1298	chr14	93516464	93516465	rs2180369	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.12	NR	rs2180369-?	NR	8E-7				Affymetrix [NR]	N
1298	chr14	93519002	93519003	rs116626996	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs116626996-A	0.01045	7E-39	(FGA)	1.166	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr14	93519002	93519003	rs116626996	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs116626996-A	0.01045	7E-37	(FGG)	1.718	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr14	93519002	93519003	rs116626996	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs116626996-A	0.01045	7E-30	(FGB)	2.374	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr14	93519002	93519003	rs116626996	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs116626996-A	0.01045	3E-8	(ANP32A)	0.1031	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr14	93519002	93519003	rs116626996	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs116626996-A	0.01045	1E-8	(SERPINF1)	0.02673	NR unit increase	Illumina [1671387] (imputed)	N
1298	chr14	93522584	93522585	rs72706424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs72706424-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1298	chr14	93550008	93550009	rs4905043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q32.12	ITPK1	rs4905043-A	0.399418	2E-16		0.01877335	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1298	chr14	93565215	93565216	rs6575306	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q32.12	ITPK1	rs6575306-G	0.2014777253881	2E-42		0.0783	[0.067-0.089] SD increase	Illumina [22400000] (imputed)	N
1298	chr14	93569777	93569778	rs8013274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	14q32.12		rs8013274-T	NR	1E-10		0.207	[0.14-0.27] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
1298	chr14	93575661	93575662	rs34162105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	14q32.12	NR	rs34162105-C	NR	3E-10		0.0187	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1299	chr14	93595590	93595591	rs11624776	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	14q32.12	ITPK1	rs11624776-?	0.69	8E-9		1.0416667	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1299	chr14	93595590	93595591	rs11624776	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	14q32.12	ITPK1, MOAP1	rs11624776-?	NR	4E-9		1.049318	[1.03-1.07]	Illumina [13763073] (imputed)	N
1299	chr14	93595590	93595591	rs11624776	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	14q32.12	ITPK1	rs11624776-A	0.66	3E-6	(TSH - Males)	0.069	[0.04-0.098] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1299	chr14	93595590	93595591	rs11624776	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	14q32.12	ITPK1	rs11624776-A	0.66	2E-9	(TSH)	0.064	[0.042-0.086] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1299	chr14	93615914	93615915	rs56382209	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q32.12	RP11-371E8.2	rs56382209-A	0.0203	1E-6		0.1238	[0.074-0.174] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1299	chr14	93644378	93644379	rs1268843	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	14q32.12	ITPK1, MOAP1	rs1268843-A	0.263	3E-6		1.19	[NR]	Illumina [580699]	N
1299	chr14	93649998	93649999	rs142325905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs142325905-T	0.01568	5E-9	(AKR1C3)	0.4342	NR unit increase	Illumina [1671387] (imputed)	N
1299	chr14	93658349	93658350	rs8019199	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	14q32.12	TMEM251	rs8019199-?		3E-6				Illumina [1048575]	N
1300	chr14	93743475	93743476	rs182261775	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	14q32.12	NR	rs182261775-G	NR	5E-6		0.564	[0.32-0.8] SD units decrease	NR [10700000] (imputed)	N
1300	chr14	93750805	93750805	rs5810626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.12	BTBD7	rs5810626-CT	0.197714	7E-10		0.0178406	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1300	chr14	93766518	93766519	rs142853993	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.12	NR	rs142853993-?	NR	2E-6		4.753	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1300	chr14	93775027	93775028	rs76446292	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.12	NR	rs76446292-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1300	chr14	93783175	93783176	rs7159126	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q32.12	BTBD7	rs7159126-T	0.716531	2E-8		0.00867886	[0.0056-0.0117] unit increase	Affymetrix [12370749]	N
1300	chr14	93788855	93788856	rs113949028	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	14q32.12	BTBD7	rs113949028-?	NR	5E-7		1.22	[1.17-1.27]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1300	chr14	93790275	93790276	rs3783890	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q32.12	NR	rs3783890-T	NR	1E-8		0.018	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1300	chr14	93790275	93790276	rs3783890	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q32.12	BTBD7	rs3783890-C	0.15	5E-11		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
1300	chr14	93790275	93790276	rs3783890	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q32.12	GOLGA5, CHGA, ITPK1, ITPK1-AS1, MOAP1, C14orf142, TMEM251, UBR7, COX8C, UNC79, PRIMA1	rs3783890-T	0.813791328887708	4E-8		0.01887497	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1300	chr14	93790275	93790276	rs3783890	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.12	BTBD7	rs3783890-T	0.814	8E-7	(EA)	0.019	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1300	chr14	93790275	93790276	rs3783890	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.12	BTBD7	rs3783890-T	0.814	7E-6	(EA, men)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1300	chr14	93790275	93790276	rs3783890	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.12	BTBD7	rs3783890-T	0.814	1E-7		0.02	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1300	chr14	93799220	93799221	rs2273640	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	14q32.12	BTBD7	rs2273640-?	NR	8E-14		0.03188	[0.024-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1301	chr14	93900608	93900609	rs4900184	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	14q32.12		rs4900184-T	NR	1E-10		0.021245036	[0.015-0.028] years increase	NR [7400000] (imputed)	N
1301	chr14	93912667	93912668	rs10134692	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q32.12	UNC79	rs10134692-C	0.441897	2E-11		0.0142611	[0.01-0.018] unit increase	NR [16516521] (imputed)	N
1301	chr14	93918884	93918885	rs8007087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.12		rs8007087-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1301	chr14	93932257	93932258	rs11160119	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q32.12	NA	rs11160119-A	0.4111	9E-22		0.0186	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1301	chr14	93932804	93932805	rs1242765	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	14q32.12	UNC79	rs1242765-?	NR	1E-7				NR [~ 24000000] (imputed)	N
1301	chr14	93963562	93963563	rs79866114	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs79866114-G	0.01045	2E-9	(SERPINA3)	0.2231	NR unit increase	Illumina [1671387] (imputed)	N
1301	chr14	93963562	93963563	rs79866114	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.12	NR	rs79866114-?	NR	8E-7		4.932	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1302	chr14	94000941	94000942	rs7151505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q32.12	Intergenic	rs7151505-G	0.4355	1E-11		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1302	chr14	94006256	94006257	rs9989141	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q32.12	NR	rs9989141-C	0.3656	7E-15		0.020101054	[0.015-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1302	chr14	94007074	94007075	rs1951716	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	14q32.12	UNC79	rs1951716-T	0.634	2E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1302	chr14	94008079	94008080	rs9989178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.12		rs9989178-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1302	chr14	94010780	94010781	rs2402306	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Adult asthma	731 Korean ancestry cases, 5,915 Korean ancestry controls	NA	14q32.12	UNC79	rs2402306-?	NR	3E-6		1.255		NR [267429]	N
1302	chr14	94013478	94013479	rs79568967	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	14q32.12	NR	rs79568967-A	NR	3E-6	(male)	0.2247	[0.13-0.32] unit increase	Illumina [11133794] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q32.12		rs6575340-A	0.64	1E-12				NR [NR] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	14q32.12		rs6575340-A	0.64	4E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q32.12		rs6575340-A	0.64	9E-18		0.013	% increase	NR [NR] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.12	UNC79	rs6575340-G	0.363991	1E-20		0.0133217	[0.011-0.016] unit decrease	Affymetrix [12370749]	N
1302	chr14	94023971	94023972	rs6575340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.12	NR	rs6575340-?	NR	1E-25				Affymetrix [~ 8270000] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.12		rs6575340-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.12	Intergenic	rs6575340-A	0.6393	1E-14	(MTAG)	0.0132	[0.0099-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr14	94023971	94023972	rs6575340	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.12	Intergenic	rs6575340-A	0.6386	4E-10	(MTAG)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr14	94031913	94031914	rs942066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.12	NA	rs942066-A	0.373	2E-24		0.0202	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr14	94031913	94031914	rs942066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q32.12	NA	rs942066-A	0.373	2E-24		0.0202	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr14	94032064	94032065	rs942065	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	14q32.12	UNC79, COX8C	rs942065-G	0.37	8E-10		0.031	unit decrease	NR [2324712] (imputed)	N
1302	chr14	94039844	94039845	rs11848361	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q32.12	NR	rs11848361-G	0.9213	2E-8		0.0478	[0.031-0.064] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1302	chr14	94051169	94051170	rs1242889	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.12	NR	rs1242889-G	0.453	8E-9		0.00631861	[0.0042-0.0085] unit decrease	NR [9732723] (imputed)	N
1302	chr14	94051169	94051170	rs1242889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.12	Intergenic	rs1242889-C	0.5475	4E-12	(MTAG)	0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr14	94051169	94051170	rs1242889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	14q32.12	Intergenic	rs1242889-C	0.5475	1E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1302	chr14	94072303	94072304	rs12147136	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q32.12	NR	rs12147136-A	NR	1E-9		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1302	chr14	94075103	94075104	rs1887195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	14q32.12		rs1887195-T	0.412915	2E-8		0.0183225	[0.012-0.025] unit increase	Illumina [13479178] (imputed)	N
1302	chr14	94076977	94076978	rs11851122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q32.12		rs11851122-G	NR	5E-21		0.0188	[0.015-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1302	chr14	94077076	94077077	rs28671107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q32.12		rs28671107-A	NR	7E-18		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1302	chr14	94109501	94109502	rs729050	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q32.12	UNC79	rs729050-T	0.411	2E-9	(Japanese)	0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
1303	chr14	94120711	94120712	rs55882426	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q32.12	NR	rs55882426-?	NR	1E-8		0.12009	[0.079-0.162] unit increase	Affymetrix [7794483] (imputed)	N
1303	chr14	94145035	94145036	rs11848254	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q32.12		rs11848254-G	0.356	8E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1303	chr14	94182382	94182383	rs35914833	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	14q32.12	PRIMA1	rs35914833-T	0.68	5E-8		1.024	[1.015-1.033]	Affymetrix [7736308] (imputed)	N
1303	chr14	94182382	94182383	rs35914833	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Body mass index	772,825 individuals	NA	14q32.12	PRIMA1	rs35914833-?	NR	5E-14		0.02	[0.016-0.024] unit increase	Affymetrix [NR]	N
1303	chr14	94182382	94182383	rs35914833	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	14q32.12	NR	rs35914833-T	0.32	3E-7		0.028	[0.018-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1303	chr14	94184498	94184499	rs10137191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.12	NR	rs10137191-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1303	chr14	94186371	94186372	rs8008104	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	14q32.12	NR	rs8008104-G	0.0948978	6E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1303	chr14	94205344	94205345	rs6575353	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	14q32.12	PRIMA1	rs6575353-?	0.90	1E-6		1.47	[1.12-1.89]	Illumina [2380486] (imputed)	N
1303	chr14	94211332	94211333	rs8019730	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.12	KIAA1409	rs8019730-?	NR	7E-6	(TAG 54:4)	0.2623021	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1303	chr14	94218948	94218949	rs61980273	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Sleep duration	112,411 European ancestry male individuals	NA	14q32.12	NR	rs61980273-A	0.039	4E-8		0.06	[0.038-0.082] unit increase	Affymetrix [at least 12428592] (imputed)	N
1303	chr14	94218948	94218949	rs61980273	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	14q32.12	PRIMA1, UNC79	rs61980273-A	0.039	1E-7		0.058	[0.036-0.08] hours increase	Affymetrix [up to 73355677] (imputed)	N
1303	chr14	94221476	94221477	rs184953371	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	14q32.12	PRIMA1	rs184953371-T	NR	2E-6	(conditioned on rs61980273)	0.53	[0.31-0.75] unit decrease	Affymetrix [up to 73355677] (imputed)	N
1304	chr14	94287047	94287048	rs2402341	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	14q32.12	PRIMA1	rs2402341-C	0.4768	2E-8		0.0114288945	[0.0075-0.0154] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1304	chr14	94287214	94287215	rs10145592	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	14q32.12	NR	rs10145592-?		2E-11		0.014845	[0.011-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1304	chr14	94287829	94287830	rs736281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q32.12		rs736281-T	0.3931	2E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1304	chr14	94287829	94287830	rs736281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.12	Intergenic	rs736281-T	0.3931	4E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1304	chr14	94309299	94309300	rs10136987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	14q32.12		rs10136987-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1304	chr14	94341751	94341752	rs17129265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.12		rs17129265-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1304	chr14	94350638	94350639	rs181332274	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	14q32.12	NR	rs181332274-?	NR	3E-6		1.8705	[1.18-2.56] unit decrease	Illumina [at least 560000] (imputed)	N
1304	chr14	94358770	94358771	rs146748084	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	14q32.12	NR	rs146748084-T	NR	8E-6		0.5404	[0.3-0.78] SD units increase	NR [10700000] (imputed)	N
1305	chr14	94391704	94391705	rs117161928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.12	NR	rs117161928-T	0.01742	6E-10	(PTMA)	0.05679	NR unit increase	Illumina [1671387] (imputed)	N
1305	chr14	94391704	94391705	rs117161928	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	14q32.12	Intergenic	rs117161928-A	NR	1E-7	(between families)	5.294	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q32.12		rs11555542-C	NR	1E-28		0.0399	[0.033-0.047] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	14q32.12		rs11555542-T	0.937	2E-17				Affymetrix [10369434] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q32.12	ASB2	rs11555542-C	0.062843	2E-37		0.058599487	[0.05-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.12	ASB2	rs11555542-C	0.062839	1E-38		0.059651963	[0.051-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.12	NR	rs11555542-C	0.0603745	3E-50				Affymetrix, Illumina [19872809] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q32.12	NR	rs11555542-C	0.062749	2E-54		0.06384	[0.056-0.072] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.12		rs11555542-?	NR	4E-46				NR [~ 8900000] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	14q32.12	ASB2	rs11555542-C	0.0638	4E-20		0.0671807	[0.053-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	14q32.12	ASB2	rs11555542-C	0.0637	1E-15		0.05877262	[0.044-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	14q32.12	ASB2	rs11555542-C	0.0637	5E-19		0.06510191	[0.051-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	14q32.12	ASB2	rs11555542-C	0.0637	9E-17		0.06105243	[0.047-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr14	94417530	94417531	rs11555542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	14q32.12	ASB2	rs11555542-C	0.0638	1E-20		0.06814164	[0.054-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1305	chr14	94436738	94436739	rs79797842	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q32.12	NR	rs79797842-?	NR	5E-9	(Japanese)	0.9475	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1305	chr14	94444786	94444787	rs2180086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q32.12	ASB2	rs2180086-G	0.804138	4E-27		0.030245094	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr14	94444786	94444787	rs2180086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.12	ASB2	rs2180086-G	0.804135	8E-26		0.029463595	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1305	chr14	94447965	94447966	rs72700362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.12	NR	rs72700362-A	NR	2E-11		0.0411	[0.029-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1305	chr14	94447965	94447966	rs72700362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.12	NR	rs72700362-A	NR	6E-14		0.0461	[0.034-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1305	chr14	94449896	94449897	rs111450466	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	14q32.12	NR	rs111450466-?		5E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
1305	chr14	94455553	94455554	rs12434998	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	14q32.12	chr14mb94	rs12434998-C	0.365899476	2E-8		0.1894	[0.12-0.26] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1305	chr14	94455786	94455787	rs12431811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.12		rs12431811-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1305	chr14	94459844	94459845	rs4905134	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	14q32.12		rs4905134-A	0.50183	1E-15		0.0547382	[0.041-0.068] increase	Affymetrix [NR]	N
1305	chr14	94459844	94459845	rs4905134	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	14q32.12		rs4905134-A	0.501169	5E-17		0.0616534	[0.047-0.076] increase	Affymetrix [NR]	N
1305	chr14	94459844	94459845	rs4905134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q32.12		rs4905134-G	NR	3E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1305	chr14	94460528	94460529	rs11844114	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	14q32.12	DDX24, ASB2	rs11844114-?	NR	5E-6	(multivariate)			Perlegen [1871025] (imputed)	N
1305	chr14	94465208	94465209	rs10145626	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q32.12	ASB2, OTUB2	rs10145626-A	0.052	4E-10		6.25	z-score increase	Affymetrix [4314223] (imputed)	N
1305	chr14	94465788	94465789	rs8013933	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.12	LINC00521	rs8013933-T	0.703	1E-8		0.122	[0.08-0.164] mmHg increase	Affymetrix [NR] (imputed)	N
1305	chr14	94465788	94465789	rs8013933	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q32.12	LINC00521	rs8013933-T	0.695	4E-13		0.1369	[0.1-0.174] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1305	chr14	94466356	94466357	rs4905138	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	14q32.12	LINC00521	rs4905138-?	0.01712	8E-6		12.76	[NR]	Affymetrix [559609]	N
1305	chr14	94468290	94468291	rs10132476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.12		rs10132476-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1305	chr14	94475566	94475567	rs116977843	32895509	Suzuki T	2020-09-07	Eur J Clin Nutr	A genome-wide association study on fish consumption in a Japanese population-the Japan Multi-Institutional Collaborative Cohort study.	Fish consumption	13,739 Japanese ancestry individuals	2,845 Japanese ancestry individuals	14q32.12	CCDC197	rs116977843-C	0.012	8E-7		6.811	[4.11-9.51] unit increase	Illumina [8504983] (imputed)	N
1305	chr14	94497968	94497969	rs181157443	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.12	NR	rs181157443-G	0.006	1E-12	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	1.18	[0.85-1.51] unit decrease	Affymetrix [10572788] (imputed)	N
1306	chr14	94533734	94533735	rs111974986	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.12	DDX24	rs111974986-T	0.012	3E-6		0.051	unit decrease	Illumina [NR] (imputed)	N
1306	chr14	94552898	94552899	rs7145904	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.12	NR	rs7145904-G	NR	8E-10		0.026	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1306	chr14	94563192	94563193	rs7157940	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	14q32.12	LOC122509, FAM14B	rs7157940-?	0.46	3E-6	(weight)	0.12	[0.07-0.17] kg increase	Illumina [316730]	N
1307	chr14	94642961	94642962	rs1956456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.12	PPP4R4	rs1956456-T	0.836	6E-23	(Aspartate aminotransferase, cytoplasmic, GOT1.4912.17.1)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr14	94643206	94643207	rs72702354	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	14q32.12		rs72702354-A	0.958498	1E-8		0.0593161	[0.039-0.08] unit increase	NR [11722792] (imputed)	N
1307	chr14	94672730	94672731	rs112458284	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	14q32.13	PPP4R4	rs112458284-C	0.02	4E-6		1.099	[0.977-1.236] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
1307	chr14	94672730	94672731	rs112458284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	PPP4R4	rs112458284-T	0.965	9E-11		0.041	unit increase	Illumina [NR] (imputed)	N
1307	chr14	94672730	94672731	rs112458284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	PPP4R4	rs112458284-C	0.993	1E-6	(AA)	0.109	unit increase	Illumina [NR] (imputed)	N
1307	chr14	94672730	94672731	rs112458284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	PPP4R4	rs112458284-T	0.965	3E-7		0.158	NR unit increase	Illumina [NR] (imputed)	N
1307	chr14	94680829	94680830	rs11848686	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs11848686-T	0.006	8E-27	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	1.72	[1.41-2.03] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr14	94689199	94689200	rs11160165	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	PPP4R4	rs11160165-T	0.164	9E-18	(Cysteine-rich hydrophobic domain-containing protein 2, CHIC2.10914.4.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr14	94702132	94702133	rs73344808	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs73344808-A	0.006	2E-24	(Protein Z-dependent protease inhibitor, SERPINA10.13119.26.3)	1.63	[1.32-1.94] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	1E-10		0.0392	[0.027-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	2E-15		0.0509	[0.038-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	2E-39		0.0837	[0.071-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	2E-13		0.0447	[0.033-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	9E-13		0.0455	[0.033-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94710948	94710949	rs45581733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	14q32.13	NR	rs45581733-A	NR	4E-13		0.0442	[0.032-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1307	chr14	94720526	94720527	rs1956162	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GOT1	5,349 Icelandic ancestry individuals	NA	14q32.13		rs1956162-T	0.1944	5E-62		0.366747	[0.32-0.41] unit increase	Illumina [7506463] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,339 Icelandic ancestry individuals	NA	14q32.13		rs2232710-C	0.0282	5E-170		1.35467	[1.26-1.45] unit decrease	Illumina [7506463] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K2	5,360 Icelandic ancestry individuals	NA	14q32.13		rs2232710-C	0.0282	5E-109		1.18592	[1.08-1.29] unit decrease	Illumina [7506463] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GOT1	5,349 Icelandic ancestry individuals	NA	14q32.13		rs2232710-C	0.0282	2E-48		0.773879	[0.67-0.88] unit increase	Illumina [7506463] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHIC2	5,348 Icelandic ancestry individuals	NA	14q32.13		rs2232710-C	0.0282	6E-14		0.405597	[0.3-0.51] unit decrease	Illumina [7506463] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs2232710-T	0.988125	9E-30	(MAP2K2, 3628_3_4)	1.2705069	[1.05-1.49] unit increase	Illumina [> 1000000] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs2232710-T	0.988125	5E-54	(SERPINA10, 6583_67_3)	1.7060645	[1.49-1.92] unit increase	Illumina [> 1000000] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs2232710-T	0.988125	3E-15	(GOT1, 4912_17_1)	0.88926333	[0.67-1.11] unit decrease	Illumina [> 1000000] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs2232710-T	0.988125	2E-18	(SERPINA10, 13119_26_3)	0.97784823	[0.76-1.2] unit decrease	Illumina [> 1000000] (imputed)	N
1307	chr14	94750485	94750486	rs2232710	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA10	rs2232710-C	0.012	5E-50	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	1.63	[1.41-1.85] unit decrease	Affymetrix [10572788] (imputed)	N
1307	chr14	94751007	94751008	rs3790037	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA10	5,339 Icelandic ancestry individuals	NA	14q32.13		rs3790037-A	0.194	7E-6		0.0968673	[0.055-0.139] unit increase	Illumina [7506463] (imputed)	N
1307	chr14	94756749	94756750	rs941591	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs941591-T	0.8046875	7E-33	(GOT1, 4912_17_1)	0.36638764	[0.31-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
1307	chr14	94756749	94756750	rs941591	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs941591-T	0.8046875	4E-223	(SERPINA10, 13119_26_3)	0.90790784	[0.86-0.96] unit decrease	Illumina [> 1000000] (imputed)	N
1307	chr14	94756749	94756750	rs941591	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs941591-T	0.8046875	2E-9	(MRPL33, 13453_2_3)	0.18835714	[0.13-0.25] unit increase	Illumina [> 1000000] (imputed)	N
1307	chr14	94756749	94756750	rs941591	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA10	rs941591-C	0.162	7E-21	(Protein Z-dependent protease inhibitor, SERPINA10.6583.67.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1307	chr14	94756749	94756750	rs941591	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA10	rs941591-C	0.162	2E-163	(Protein Z-dependent protease inhibitor, SERPINA10.13119.26.3)	0.84	[0.78-0.9] unit increase	Affymetrix [10572788] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCF2	5,364 Icelandic ancestry individuals	NA	14q32.13		rs45505795-C	0.02245	7E-23		0.617615	[0.49-0.74] unit increase	Illumina [7506463] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL33	5,366 Icelandic ancestry individuals	NA	14q32.13		rs45505795-C	0.02245	4E-16		0.521825	[0.4-0.65] unit increase	Illumina [7506463] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.13	SERPINA10	rs45505795-C	NR	6E-9		0.0486541	[0.032-0.065] unit increase	Affymetrix [321016] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	SERPINA10	rs45505795-C	0.036	1E-10		0.039	unit decrease	Illumina [NR] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	SERPINA10	rs45505795-C	0.036	1E-7		0.155	NR unit decrease	Illumina [NR] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	14q32.13	SERPINA10	rs45505795-C	NR	1E-8	(%LAA-950, All)	0.31	[0.15-0.47] unit decrease	Illumina [7600000] (imputed)	N
1307	chr14	94756942	94756943	rs45505795	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	14q32.13	SERPINA10	rs45505795-C	NR	1E-6	(Perc15, All)	6.4	[1.11-11.69] unit increase	Illumina [7600000] (imputed)	N
1307	chr14	94762509	94762510	rs187209742	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Waist-to-hip ratio adjusted for body mass index	19,695 British ancestry individuals from 6863 families.	NA	14q32.13	SERPINA10	rs187209742-G	0.0023	5E-8		0.7211519	[0.46-0.98] unit decrease	Illumina [24111857] (imputed)	N
1308	chr14	94765671	94765672	rs2402444	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	Intergenic	rs2402444-G	0.907	2E-6	(AA)	0.028	unit increase	Illumina [NR] (imputed)	N
1308	chr14	94768195	94768196	rs145730801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	14q32.13		rs145730801-T	0.955564	2E-36		0.128047	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94768195	94768196	rs145730801	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	14q32.13		rs145730801-T	0.95554	2E-10		0.0643177	[0.044-0.084] unit increase	NR [11722792] (imputed)	N
1308	chr14	94768195	94768196	rs145730801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	14q32.13		rs145730801-C	NR	2E-9		0.0344	[0.023-0.046] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1308	chr14	94768195	94768196	rs145730801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	14q32.13	SERPINA6	rs145730801-T	0.955623	4E-12		0.0359582	[0.026-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr14	94768195	94768196	rs145730801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	14q32.13	SERPINA6	rs145730801-T	0.955616	4E-13		0.0374237	[0.027-0.048] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr14	94768391	94768392	rs11620763	33469137	Crawford AA	2021-01-20	J Hum Genet	Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease.	Plasma cortisol levels (morning)	25,314 European ancestry individuals	NA	14q32.13		rs11620763-?	NR	1E-6				Affymetrix, Illumina [8452427] (imputed)	N
1308	chr14	94769080	94769081	rs7146221	33469137	Crawford AA	2021-01-20	J Hum Genet	Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease.	Plasma cortisol levels (morning)	25,314 European ancestry individuals	NA	14q32.13		rs7146221-?	NR	1E-6				Affymetrix, Illumina [8452427] (imputed)	N
1308	chr14	94770183	94770184	rs78715582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs78715582-C	NR	1E-12		0.0232	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94770183	94770184	rs78715582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs78715582-C	NR	5E-18		0.0281	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94784617	94784618	rs61980636	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	14q32.13	SERPINA6	rs61980636-T	0.2	5E-12		6.91	z-score increase	Affymetrix [4312306] (imputed)	N
1308	chr14	94791952	94791954	rs372826270	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q32.13	intergenic	rs372826270-?	0.0011	5E-8		0.3676	[0.24-0.5] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1308	chr14	94795201	94795202	rs9989237	33469137	Crawford AA	2021-01-20	J Hum Genet	Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease.	Plasma cortisol levels (morning)	25,314 European ancestry individuals	NA	14q32.13		rs9989237-?	0.22	2E-19		0.11	NR z score increase	Affymetrix, Illumina [8452427] (imputed)	N
1308	chr14	94795201	94795202	rs9989237	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Cortisol levels (plasma)	4,301 European ancestry men, 3,366 European ancestry women	NA	14q32.13	NR	rs9989237-T	0.224	6E-9		0.0403298	[0.027-0.054] unit increase	Affymetrix [up to 8900000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	2E-29		0.0351	[0.029-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	2E-21		0.0294	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	9E-86		0.0609	[0.055-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	4E-23		0.0308	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	6E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	3E-10		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q32.13	NR	rs4905179-G	NR	4E-17		0.025	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94795491	94795492	rs4905179	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	SERPINA6	rs4905179-G	0.1926559	8E-14	(EA, Alpha-1-antitrypsin)	0.4042	[0.3-0.51] unit decrease	Affymetrix [509946]	N
1308	chr14	94795491	94795492	rs4905179	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	14q32.13	NR	rs4905179-?		2E-15	(SERPINA1)	0.3568	[NR] unit decrease	Illumina [NR]	N
1308	chr14	94796183	94796184	rs61280460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.13		rs61280460-T	0.205344	2E-12		0.019680485	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr14	94796183	94796184	rs61280460	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	14q32.13	SERPINA6, CLMN	rs61280460-T	0.199	8E-7		0.095	[0.058-0.132] cup size decrease	Illumina [7422970] (imputed)	N
1308	chr14	94809759	94809760	rs2749534	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	SERPINA1, SERPINA2	rs2749534-G	0.2011033	6E-15	(EA, Alpha-1-antitrypsin)	0.4267	[0.32-0.53] unit increase	Affymetrix [509946]	N
1308	chr14	94829061	94829062	rs4905192	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4905192-C	0.725625	4E-10	(SERPINA1, 3580_25_8)	0.16820717	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
1308	chr14	94829061	94829062	rs4905192	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4905192-C	0.725625	1E-23	(MRPL33, 13453_2_3)	0.27391645	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q32.13		rs112635299-T	NR	1E-9		0.0489	[0.033-0.065] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q32.13		rs112635299-T	NR	2E-84		0.1119	[0.1-0.12] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	14q32.13		rs112635299-T	NR	9E-9		0.223	[0.15-0.3] unit decrease	Affymetrix, Illumina [25844227] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	14q32.13	SERPINA1	rs112635299-T	NR	3E-13		0.0786663	[0.058-0.1] unit increase	Affymetrix [321114] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs autism spectrum disorder (ordinary least squares (OLS))	170,756 MDD cases, 18,381 autism spectrum disorder cases	NA	14q32.13		rs112635299-?	NR	2E-8		0.011	NR unit decrease	NR [6057537] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	14q32.13	SERPINA1	rs112635299-G	0.983201	6E-7		1.17	[1.10-1.25]	NR [8126035] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	C-reactive protein levels	8,318 European ancestry individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.03	3E-13		0.41	[0.3-0.52] unit decrease	Illumina [~ 9000000] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.020509	2E-18		0.069258004	[0.054-0.085] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.0205070000000001	4E-16		0.064367935	[0.049-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.020527	3E-19		0.07067639	[0.055-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.020528	4E-18		0.068399705	[0.053-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q32.13	NR	rs112635299-G	0.979102	3E-11		0.0621054	[0.043-0.081] unit increase	Affymetrix [16580851] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	14q32.13	NR	rs112635299-G	0.979033	1E-31		0.102348	[0.085-0.12] unit increase	Affymetrix [16585745] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.02	4E-12		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	14q32.13	Intergenic	rs112635299-T	0.025	2E-7		1.245	[NR]	Illumina [9112387] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	14q32.13	SERPINA6	rs112635299-T	0.02	1E-9	(BMI-adjusted)	0.096	[0.065-0.127] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	14q32.13	SERPINA1, SERPINA2	rs112635299-T	0.02	2E-10		0.107	[0.074-0.14] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.023	3E-33	(Synaptosomal-associated protein 25, SNAP25.13105.7.3)	0.99	[0.83-1.15] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs112635299-T	0.023	3E-12	(Complement C1q tumor necrosis factor-related protein 1, C1QTNF1.6304.8.3)	0.58	[0.42-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	14q32.13	SERPINA1, SERPINA2	rs112635299-T	0.0193	8E-10		0.1363	[0.093-0.18] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q32.13	SERPINA1, SERPINA2	rs112635299-T	0.019	5E-10		0.165	[0.11-0.22] unit decrease	Affymetrix [7947838] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	Intergenic	rs112635299-T	0.02	2E-9		0.045	unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	Intergenic	rs112635299-T	0.02	3E-7		0.186	NR unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94838141	94838142	rs112635299	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	14q32.13	SERPINA1	rs112635299-?	NR	3E-12	(Alpha-1 Globulin)			Illumina [up to 10879115] (imputed)	N
1308	chr14	94838201	94838202	rs145602600	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.13	NR	rs145602600-T	0.005345999999999962	8E-11		0.132605	[0.091-0.174] unit increase	Affymetrix [16577313] (imputed)	N
1308	chr14	94841640	94841641	rs1243167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA1	5,349 Icelandic ancestry individuals	NA	14q32.13		rs1243167-A	0.276	4E-15		0.158962	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94843454	94843455	rs11568814	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	14q32.13	SERPINA1	rs11568814-C	0.93	4E-6		0.84	[0.49-1.19] unit increase	Illumina [5833901] (imputed)	N
1308	chr14	94843718	94843719	rs11628917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs11628917-T	NR	2E-13		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94844561	94844562	rs2073333	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL33	5,366 Icelandic ancestry individuals	NA	14q32.13		rs2073333-T	0.2035	2E-175		0.619437	[0.58-0.66] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94844561	94844562	rs2073333	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KMT2C	5,365 Icelandic ancestry individuals	NA	14q32.13		rs2073333-T	0.2035	2E-42		0.309418	[0.26-0.35] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94844561	94844562	rs2073333	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSK3A;GSK3B	5,364 Icelandic ancestry individuals	NA	14q32.13		rs2073333-T	0.2035	6E-302		0.778041	[0.74-0.82] unit decrease	Illumina [7506463] (imputed)	N
1308	chr14	94844561	94844562	rs2073333	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCP1B	5,366 Icelandic ancestry individuals	NA	14q32.13		rs2073333-T	0.2035	2E-96		0.475767	[0.43-0.52] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94844842	94844843	rs1303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs1303-G	0.259	5E-39	(PH and SEC7 domain-containing protein 1, PSD.13055.53.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844842	94844843	rs1303	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	14q32.13	SERPINA1	rs1303-?	0.24	5E-48				Illumina [~ 2000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980025	9E-13		0.105202	[0.076-0.134] unit increase	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980015	2E-10		0.0943898	[0.065-0.123] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980027	4E-8		0.0781146	[0.05-0.106] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980027	3E-82		0.28097	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980022	9E-10		0.0905463	[0.062-0.12] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980015	6E-12		0.0984874	[0.07-0.127] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980029	1E-9		0.0884475	[0.06-0.117] unit increase	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980027	6E-11		0.095259	[0.067-0.124] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980025	8E-12		0.0967925	[0.069-0.125] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980025	1E-11		0.098454	[0.07-0.127] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	14q32.13		rs28929474-C	0.980024	3E-187		0.429046	[0.4-0.46] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	14q32.13		rs28929474-C	0.97999	1E-27		0.159726	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.13		rs28929474-T	0.02	2E-20		9.28	z score increase	Affymetrix [9061022] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.13		rs28929474-T	0.02	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.13		rs28929474-T	0.02	5E-12		6.9	z score increase	Affymetrix [9061022] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	2E-8		0.045	[0.029-0.061] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	6E-55		0.1393	[0.12-0.16] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	7E-51		0.1238	[0.11-0.14] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	2E-202		0.2651	[0.25-0.28] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	3E-8		0.0449	[0.029-0.061] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	4E-8		0.0434	[0.028-0.059] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	14q32.13		rs28929474-T	NR	9E-21		0.3236	[0.26-0.39] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	2E-44		0.1231	[0.11-0.14] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	2E-33		0.1027	[0.086-0.119] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	1E-9		0.0495	[0.034-0.065] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	8E-45		0.1139	[0.098-0.13] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q32.13		rs28929474-T	NR	6E-56		0.1249	[0.11-0.14] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0193	1E-9				NR [9056863] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0193	2E-12				NR [9056863] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	14q32.13		rs28929474-T	0.0195	1E-10		0.80993605	[0.75980396-0.863375844]	Affymetrix, Illumina [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	14q32.13	NR	rs28929474-C	0.98	2E-15		1.47	NR	NR [8853336] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?	NR	3E-50		0.0131	[0.011-0.015] unit increase	Affymetrix [21347608] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?	NR	1E-72		0.0246	[0.021-0.028] unit increase	Affymetrix [21347608] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-C	0.979905	1E-8		0.0415529	[0.027-0.056] unit decrease	NR [16516521] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.13	SERPINA1	rs28929474-T	NR	3E-12		0.0700137	[0.05-0.09] unit increase	Affymetrix [321016] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	14q32.13	SERPINA1	rs28929474-T	NR	7E-13		0.0782955	[0.057-0.1] unit increase	Affymetrix [323123] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	14q32.13	SERPINA1	rs28929474-C	0.980154	8E-12		0.01201	[0.0084-0.0156] unit decrease	Affymetrix [13995440] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q32.13	SERPINA1	rs28929474-C	0.980155	1E-71		0.0143178	[0.013-0.016] unit decrease	Affymetrix [13995440] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	14q32.13	SERPINA1	rs28929474-C	0.980146	4E-63		0.0230928	[0.02-0.026] unit decrease	Affymetrix [13995440] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.01967	2E-46		0.01164	[0.01-0.013] unit increase	Affymetrix [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	14q32.13		rs28929474-?	NR	6E-9				NR [9705931] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	2E-9		0.0519	[0.035-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	2E-11		0.0612	[0.043-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	6E-129		0.219	[0.2-0.24] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	3E-56		0.1428	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	3E-50		0.1285	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	8E-205		0.2755	[0.26-0.29] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	1E-12		0.0613	[0.044-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	1E-10		0.0558	[0.039-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	6E-11		0.0608	[0.043-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	3E-19		0.0775	[0.061-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	2E-46		0.1291	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	1E-31		0.1011	[0.084-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	5E-24		0.0874	[0.071-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	1E-48		0.1266	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	14q32.13	NR	rs28929474-T	NR	2E-60		0.1413	[0.12-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?		2E-9		0.1633	[0.11-0.22] unit decrease	Illumina [31500000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?		1E-17		0.2184	[0.17-0.27] unit decrease	Illumina [31500000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33310085	Emdin CA	2020-12-10	Gastroenterology	Association of genetic variation with cirrhosis: a multi-trait genome-wide association and gene-environment interaction study.	Cirrhosis (multi-trait analysis)	4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements	3,554 European, African, Asian and unknown ancestry cases, 343,286 European, African, Asian and unknown ancestry controls	14q32.13	SERPINA1	rs28929474-T	0.02	8E-56				Affymetrix, Illumina [3163456] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.0198	1E-14		0.0527	[0.039-0.066] unit increase	Affymetrix [18391927] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	14q32.13	SERPINA1	rs28929474-T	0.02	8E-9		0.05	[0.032-0.068] unit increase	Affymetrix [18391927] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	14q32.13	SERPINA1	rs28929474-T	0.02	3E-7		0.05	[0.03-0.07] unit increase	Affymetrix [18391927] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	14q32.13		rs28929474-T	0.02	5E-66		0.6011	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	14q32.13		rs28929474-T	0.023	4E-22		0.2684	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	14q32.13	SERPINA1	rs28929474-T	NR	1E-8		0.7193	[0.47-0.97] unit increase	Illumina [9377111] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?		2E-9				NR [7428630] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	14q32.13		rs28929474-?	0.02046	1E-6		0.01839	unit increase	NR [6200000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	14q32.13		rs28929474-?	0.02046	4E-8		0.0292	unit increase	NR [6200000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0184	2E-12		0.05428487	[0.039-0.069] unit decrease	Affymetrix [10613246] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0154	2E-14		0.053747147	[0.04-0.068] unit decrease	Affymetrix [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.020000000000000018	1E-17		0.0399493	[0.031-0.049] unit increase	Affymetrix [16578495] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.13	NR	rs28929474-T	0.019899	1E-95		0.221657	[0.2-0.24] unit increase	Affymetrix [16577313] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.019996000000000014	8E-240		0.0964206	[0.091-0.102] unit increase	Affymetrix [16582909] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.13	NR	rs28929474-T	0.02015	3E-43		0.0609132	[0.052-0.07] unit increase	Affymetrix [16585854] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q32.13	NR	rs28929474-T	0.019831000000000043	1E-252		0.133014	[0.12-0.14] unit increase	Affymetrix [16582621] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.019996000000000014	2E-205		0.100978	[0.094-0.108] unit increase	Affymetrix [16582965] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.13	NR	rs28929474-T	0.02015	1E-33		0.0627387	[0.053-0.073] unit increase	Affymetrix [16585866] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q32.13	NR	rs28929474-T	0.019831000000000043	1E-232		0.138303	[0.13-0.15] unit increase	Affymetrix [16582614] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q32.13	NR	rs28929474-C	0.980025	1E-38		0.0915661	[0.078-0.106] unit increase	Affymetrix [16583148] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q32.13	NR	rs28929474-C	0.979816	3E-49		0.103242	[0.09-0.117] unit increase	NR [NR]	N
1308	chr14	94844946	94844947	rs28929474	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alpha-fetoprotein levels	22,686 Icelandic ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.008	1E-47		0.85	[0.96-0.74] unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.008	3E-17		0.2	[0.15-0.24] unit increase	Illumina [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q32.13	SERPINA1	rs28929474-C	0.9798	9E-8		0.0193	[0.012-0.026] unit increase	Affymetrix [~ 7740000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.0198	2E-11		0.0568	[0.04-0.073] unit decrease	Illumina [~ 250000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.0201	7E-10		0.048947606	[0.033-0.065] unit decrease	Affymetrix [11514936] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0183	7E-13		0.0353946	[0.026-0.045] unit decrease	NR [~ 9732723] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.0183	1E-11		0.036799625	[0.026-0.047] unit decrease	NR [~ 10000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.13		rs28929474-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.13		rs28929474-?	NR	3E-120				NR [~ 8900000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.13		rs28929474-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q32.13	NR	rs28929474-?	NR	6E-9		0.4568	[0.3-0.61] unit increase	Affymetrix [7794483] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q32.13	NR	rs28929474-?	NR	2E-6	(male)	0.58858	[0.34-0.83] unit increase	Affymetrix [7794483] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	14q32.13	SERPINA1	rs28929474-?		2E-17		1.33	[1.25-1.42]	Affymetrix, Illumina [43000000] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	14q32.13	SERPINA1	rs28929474-T	0.029	4E-8		13.62	unit decrease	Illumina [635970]	N
1308	chr14	94844946	94844947	rs28929474	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	14q32.13	SERPINA1	rs28929474-T	0.029	1E-8		0.08749	[NR] unit decrease	Illumina [635970]	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	9E-14	(Glypican-6, GPC6.5350.14.2)	0.62	[0.46-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	7E-13	(Urea transporter 2, SLC14A2.12818.159.3)	0.6	[0.44-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	6E-49	(Lysosomal acid phosphatase, ACP2.9237.54.3)	1.2	[1.04-1.36] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	4E-36	(Serine/threonine-protein kinase pim-1, PIM1.5359.65.3)	1.03	[0.87-1.19] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	4E-109	(39S ribosomal protein L33, mitochondrial, MRPL33.13453.2.3)	1.74	[1.58-1.9] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	3E-66	(Zinc finger protein 175, ZNF175.12716.3.3)	1.38	[1.22-1.54] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	3E-37	(Neutrophil cytosol factor 2, NCF2.10047.12.3)	1.05	[0.89-1.21] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	3E-19	(WNT1-inducible-signaling pathway protein 3, WISP3.5927.4.3)	0.74	[0.58-0.9] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	2E-18	(DnaJ homolog subfamily B member 9, DNAJB9.11214.40.3)	0.73	[0.57-0.89] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	1E-18	(Thioredoxin domain-containing protein 5, TXNDC5.11212.7.3)	0.73	[0.57-0.89] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	1E-14	(Arfaptin-2, ARFIP2.12630.8.3)	0.64	[0.48-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	14q32.13	SERPINA1	rs28929474-T	0.0226130653266331	6E-78		0.03222141	unit increase	NR [9276018] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	14q32.13	NR	rs28929474-T	0.0226130653266331	2E-13				NR [9276018] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	14q32.13	SERPINA1	rs28929474-T	0.028	1E-6		0.067	[0.04-0.094] unit increase	Illumina [at least 81396]	N
1308	chr14	94844946	94844947	rs28929474	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	14q32.13	NR	rs28929474-T	NR	1E-21		0.07160802	[0.057-0.086] unit increase	Illumina [242289]	N
1308	chr14	94844946	94844947	rs28929474	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	14q32.13	NR	rs28929474-T	0.018	1E-11		0.078	unit increase	Illumina [242289]	N
1308	chr14	94844946	94844947	rs28929474	28887542	Prins BP	2017-09-08	Sci Rep	Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations.	Alanine transaminase levels	5,458 European ancestry women, 4,273 European ancestry men	up to 9,888 European ancestry individuals, up to 16,013 individuals	14q32.13	SERPINA1	rs28929474-T	0.02	2E-10		0.04	[0.020-0.060] unit increase	Illumina [at least 23756480] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q32.13	SERPINA1	rs28929474-T	0.0189	1E-7		0.1346	[0.085-0.184] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	14q32.13	SERPINA1	rs28929474-T	0.02	3E-12		2.18	1.75-2.71	Affymetrix [at least 333035] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-?	NR	5E-7		0.215	[0.299-0.131] unit decrease	Illumina [12039487] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.02	3E-13	(Glycoprotein acetyls)	0.29	[0.21-0.37] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.022	1E-8		0.039	unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94844946	94844947	rs28929474	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.13	SERPINA1	rs28929474-T	0.023	1E-6		0.162	NR unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94846315	94846316	rs11846959	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs11846959-A	0.259	7E-109	(39S ribosomal protein L33, mitochondrial, MRPL33.13453.2.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94846660	94846661	rs17090719	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP2	5,365 Icelandic ancestry individuals	NA	14q32.13		rs17090719-C	0.2107	5E-17		0.189588	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	14q32.13		rs17580-T	0.952133	4E-8		0.0509775	[0.033-0.069] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	14q32.13		rs17580-T	0.952143	1E-8		0.0528802	[0.035-0.071] unit increase	NR [11722792] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UCHL1	5,364 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	9E-127		1.18371	[1.09-1.28] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX2	5,363 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	5E-96		1.01023	[0.92-1.11] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC14A2	5,362 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	5E-94		1.03012	[0.93-1.13] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC8	5,359 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	6E-48		0.726474	[0.63-0.82] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB31	5,360 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	9E-42		0.672859	[0.58-0.77] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCF2	5,364 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	3E-234		1.52946	[1.44-1.62] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL33	5,366 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	3E-28		0.569195	[0.47-0.67] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRT5	5,363 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	2E-12		0.35826	[0.26-0.46] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALK1	5,361 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	2E-17		0.431049	[0.33-0.53] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERMAP	5,361 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	8E-25		0.5215	[0.42-0.62] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDHR1	5,361 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	1E-30		0.585462	[0.49-0.69] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDC42BPA	5,350 Icelandic ancestry individuals	NA	14q32.13		rs17580-A	0.03377	1E-43		0.676453	[0.58-0.77] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94847261	94847262	rs17580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.13		rs17580-A	NR	1E-9		0.0328	[0.022-0.043] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.0379	1E-10		0.076	[0.053-0.099] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	1E-11		0.0383	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	2E-19		0.0535	[0.042-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	1E-13		0.0437	[0.032-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	8E-63		0.0985	[0.087-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	3E-15		0.0446	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	4E-16		0.0479	[0.036-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	1E-9		0.0345	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	NR	8E-15		0.0439	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.13	SERPINA1	rs17580-A	0.047752	6E-12		0.03638124	[0.026-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.13	NR	rs17580-A	0.0449526	4E-13				Affymetrix, Illumina [24588908] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.13	NR	rs17580-A	0.04653	5E-16		0.035466	[0.027-0.044] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q32.13	NR	rs17580-T	0.952305	4E-30		0.0514106	[0.043-0.06] unit decrease	Affymetrix [15000001]	N
1308	chr14	94847261	94847262	rs17580	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	14q32.13	SERPINA1	rs17580-?	NR	2E-15		0.0472	[0.037-0.058] unit increase	Affymetrix [5701386] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.13	NR	rs17580-A	0.04824799999999996	2E-12		0.048637	[0.035-0.063] unit increase	Affymetrix [16577313] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.13	NR	rs17580-A	0.048223000000000016	2E-42		0.0257707	[0.022-0.03] unit increase	Affymetrix [16582909] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.13	NR	rs17580-A	0.04798100000000005	9E-18		0.024013	[0.018-0.03] unit increase	Affymetrix [16585854] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.13	NR	rs17580-A	0.048223000000000016	4E-35		0.0258533	[0.022-0.03] unit increase	Affymetrix [16582965] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.13	NR	rs17580-A	0.04798100000000005	4E-12		0.0231006	[0.017-0.03] unit increase	Affymetrix [16585866] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q32.13	NR	rs17580-T	0.951818	1E-8		0.0270762	[0.018-0.036] unit increase	Affymetrix [16583148] (imputed)	N
1308	chr14	94847261	94847262	rs17580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	14q32.13	NR	rs17580-T	0.952028	7E-12		0.0401832	[0.029-0.052] unit increase	Affymetrix [16585745] (imputed)	N
1308	chr14	94847261	94847262	rs17580	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alpha-fetoprotein levels	22,686 Icelandic ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.033	8E-38		0.38	[0.43-0.32] unit decrease	Illumina [NR] (imputed)	N
1308	chr14	94847261	94847262	rs17580	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q32.13	SERPINA1	rs17580-A	0.0412	3E-16		0.0571	[0.043-0.071] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q32.13	SERPINA1	rs17580-A	0.0413	1E-18		0.0615	[0.048-0.075] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	9E-12	(WNT1-inducible-signaling pathway protein 3, WISP3.5927.4.3)	0.39	[0.27-0.51] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	3E-23	(Serine/threonine-protein kinase MRCK alpha, CDC42BPA.12706.2.3)	0.56	[0.44-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	2E-75	(Syntaxin-2, STX2.7738.299.3)	1.0	[0.9-1.1] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-89	(Urea transporter 2, SLC14A2.12818.159.3)	1.08	[0.98-1.18] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-76	(Synaptosomal-associated protein 25, SNAP25.13105.7.3)	1.01	[0.91-1.11] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-51	(Cadherin-related family member 1, CDHR1.8372.29.3)	0.83	[0.71-0.95] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-37	(15-hydroxyprostaglandin dehydrogenase [NAD(+)], HPGD.4995.16.1)	0.71	[0.59-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-32	(Neutrophil cytosol factor 2, NCF2.10047.12.3)	0.66	[0.54-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.05	1E-30	(Sialic acid-binding Ig-like lectin 8, SIGLEC8.7864.3.3)	0.64	[0.52-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-T	NR	1E-9		0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-T	0.959	3E-7	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-T	NR	9E-11		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr14	94847261	94847262	rs17580	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	14q32.13	NR	rs17580-T	0.959	3E-8	(EA)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1308	chr14	94847261	94847262	rs17580	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q32.13	SERPINA1	rs17580-A	0.0482	4E-9		0.05004851	[0.033-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	14q32.13		rs28929470-G	0.995824	6E-9		0.185765	[0.12-0.25] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	14q32.13		rs28929470-?	NR	2E-30		0.172942	[0.14-0.2] unit increase	NR [9800000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	14q32.13		rs28929470-?	NR	5E-15		0.122493	[0.09-0.155] unit increase	NR [9800000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	14q32.13		rs28929470-?	NR	1E-37		0.204912	[0.17-0.24] unit increase	NR [9800000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	14q32.13		rs28929470-?	NR	6E-23		0.158052	[0.13-0.19] unit increase	NR [9800000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs28929470-A	NR	2E-15		0.1547	[0.12-0.19] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs28929470-A	NR	2E-10		0.1228	[0.085-0.161] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs28929470-A	NR	5E-21		0.182	[0.14-0.22] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.13	NR	rs28929470-A	NR	2E-13		0.1426	[0.1-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.13	NR	rs28929470-A	0.004264999999999963	7E-31		0.0700719	[0.057-0.083] unit increase	Affymetrix [16582909] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.13	NR	rs28929470-A	0.004237999999999964	4E-9		0.052322	[0.034-0.071] unit increase	Affymetrix [16585854] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.13	NR	rs28929470-A	0.004264999999999963	2E-24		0.0694464	[0.055-0.083] unit increase	Affymetrix [16582965] (imputed)	N
1308	chr14	94847385	94847386	rs28929470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.13	NR	rs28929470-A	0.004237999999999964	3E-7		0.0539327	[0.032-0.075] unit increase	Affymetrix [16585866] (imputed)	N
1308	chr14	94847414	94847415	rs6647	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	14q32.13	SERPINA1	rs6647-G	0.18	6E-9		1.22	[1.13-1.31]	Illumina [92772]	N
1308	chr14	94849200	94849201	rs709932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	14q32.13		rs709932-C	0.844213	3E-11		0.0379974	[0.027-0.049] unit decrease	NR [11722792] (imputed)	N
1308	chr14	94849200	94849201	rs709932	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	14q32.13		rs709932-C	0.844233	4E-8		0.031193	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
1308	chr14	94849200	94849201	rs709932	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP14	5,367 Icelandic ancestry individuals	NA	14q32.13		rs709932-T	0.1179	3E-12		0.204679	[0.15-0.26] unit decrease	Illumina [7506463] (imputed)	N
1308	chr14	94851545	94851546	rs73349067	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs73349067-A	NR	3E-28		0.0381	[0.031-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1308	chr14	94852218	94852219	rs72706301	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	14q32.13		rs72706301-?	NR	3E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1308	chr14	94863635	94863636	rs7151526	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	14q32.13	SERPINA11, SERPINA1	rs7151526-?	NR	2E-9		1.69	[NR]	Affymetrix [NR]	N
1308	chr14	94865707	94865708	rs2896268	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	14q32.13	Intergenic	rs2896268-?		2E-6				NR [NR]	N
1308	chr14	94866136	94866137	rs2402446	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alpha-fetoprotein levels	22,686 Icelandic ancestry individuals	NA	14q32.13	intergenic	rs2402446-T	0.476	8E-9		0.06	[0.04-0.08] unit increase	Illumina [NR] (imputed)	N
1308	chr14	94876405	94876406	rs151053242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,364 Icelandic ancestry individuals	NA	14q32.13		rs151053242-A	0.01149	3E-6		0.41869	[0.24-0.59] unit decrease	Illumina [7506463] (imputed)	N
1308	chr14	94876405	94876406	rs151053242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,361 Icelandic ancestry individuals	NA	14q32.13		rs151053242-A	0.01149	4E-18		0.766859	[0.59-0.94] unit decrease	Illumina [7506463] (imputed)	N
1308	chr14	94877867	94877868	rs112963922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIM1	5,329 Icelandic ancestry individuals	NA	14q32.13		rs112963922-T	0.01087	4E-15		0.598997	[0.45-0.75] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94877867	94877868	rs112963922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCF2	5,364 Icelandic ancestry individuals	NA	14q32.13		rs112963922-T	0.01087	1E-35		1.09405	[0.92-1.27] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94877867	94877868	rs112963922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL33	5,366 Icelandic ancestry individuals	NA	14q32.13		rs112963922-T	0.01087	6E-34		1.08615	[0.91-1.26] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94877867	94877868	rs112963922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP2	5,365 Icelandic ancestry individuals	NA	14q32.13		rs112963922-T	0.01087	1E-20		0.825292	[0.65-1] unit increase	Illumina [7506463] (imputed)	N
1308	chr14	94891782	94891783	rs55845302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs55845302-G	NR	1E-16		0.0433	[0.033-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1308	chr14	94891782	94891783	rs55845302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs55845302-G	NR	5E-12		0.036	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1309	chr14	94906821	94906822	rs76524332	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA9	rs76524332-G	0.8959375	6E-6	(SERPINA9, 7266_4_3)	0.18198374	[0.1-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1309	chr14	94913208	94913209	rs17090881	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA11	rs17090881-C	0.8353125	2E-20	(SERPINA11, 9002_36_3)	0.28799286	[0.23-0.35] unit increase	Illumina [> 1000000] (imputed)	N
1309	chr14	94913889	94913890	rs77278723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs77278723-T	NR	7E-10		0.0345	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1309	chr14	94913889	94913890	rs77278723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs77278723-T	NR	4E-10		0.0349	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1309	chr14	94928139	94928140	rs2180813	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA11	5,329 Icelandic ancestry individuals	NA	14q32.13		rs2180813-T	0.1645	6E-34		0.235681	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
1309	chr14	94949290	94949291	rs2038499	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA11	5,329 Icelandic ancestry individuals	NA	14q32.13		rs2038499-T	0.2517	1E-9		0.101343	[0.069-0.134] unit decrease	Illumina [7506463] (imputed)	N
1309	chr14	94957713	94957714	rs1998207	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	SERPINA12	rs1998207-A	0.22	7E-6	(Trunk fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1309	chr14	94957713	94957714	rs1998207	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	SERPINA12	rs1998207-A	0.22	3E-6	(Fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1309	chr14	94957713	94957714	rs1998207	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	SERPINA12	rs1998207-A	0.22	1E-6	(Fat mass )	0.04	[NR] % increase	Illumina [899892]	N
1309	chr14	94965836	94965837	rs17825787	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	14q32.13		rs17825787-?	NR	2E-8		1.3464	[0.88-1.82] unit increase	Affymetrix [NR] (imputed)	N
1309	chr14	94967640	94967641	rs57705361	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	14q32.13	NR	rs57705361-?	NR	5E-6				Illumina [5946283] (imputed)	N
1309	chr14	94972241	94972242	rs11627075	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	SERPINA12	rs11627075-A	0.046	3E-6	(C-peptide )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1309	chr14	94975886	94975887	rs60189618	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs60189618-T	0.081	2E-23	(Serpin A12, SERPINA12.6551.94.3)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr14	94981534	94981535	rs8006968	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Vaspin plasma levels	400 French ancestry individuals	NA	14q32.13		rs8006968-T	NR	4E-16		0.667	[0.48-0.85] pg/mL decrease	Illumina [5201092] (imputed)	N
1309	chr14	94982592	94982593	rs73338697	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs73338697-A	0.008	1E-13	(Serpin A12, SERPINA12.6551.94.3)	1.08	[0.79-1.37] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr14	94983723	94983724	rs76624128	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA12	5,364 Icelandic ancestry individuals	NA	14q32.13		rs76624128-G	0.06321	9E-36		0.482643	[0.41-0.56] unit increase	Illumina [7506463] (imputed)	N
1309	chr14	94988701	94988702	rs4900235	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA12	5,364 Icelandic ancestry individuals	NA	14q32.13		rs4900235-T	0.2334	3E-69		0.391522	[0.35-0.44] unit increase	Illumina [7506463] (imputed)	N
1309	chr14	94993935	94993936	rs7141746	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	14q32.13	NR	rs7141746-G	NR	1E-7		0.102	[0.065-0.139] unit decrease	Illumina [6319684] (imputed)	N
1309	chr14	94993935	94993936	rs7141746	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	14q32.13	NR	rs7141746-G	NR	5E-7		0.097	[0.06-0.134] unit decrease	Illumina [6319684] (imputed)	N
1309	chr14	94996734	94996735	rs34825443	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA12	rs34825443-G	0.221	7E-28	(Serpin A12, SERPINA12.6551.94.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr14	95000797	95000798	rs72694912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs72694912-G	NR	1E-17		0.0478	[0.037-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1309	chr14	95005152	95005153	rs4900236	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4900236-C	0.75828125	8E-9	(SERPINA11, 9002_36_3)	0.15706375	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1309	chr14	95005152	95005153	rs4900236	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4900236-C	0.75828125	2E-37	(SERPINA12, 6551_94_3)	0.3653897	[0.31-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
1309	chr14	95005152	95005153	rs4900236	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4900236-C	0.75828125	2E-18	(SERPINA4, 14105_5_3)	0.25221694	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1309	chr14	95005152	95005153	rs4900236	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs4900236-C	0.75828125	1E-24	(SERPINA4, 3449_58_2)	0.2950195	[0.24-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
1309	chr14	95007743	95007744	rs10135681	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	Intergenic	rs10135681-C	0.3951856	8E-11	(EA, Kallistatin)	0.2771	[0.19-0.36] unit increase	Affymetrix [509946]	N
1309	chr14	95012383	95012384	rs11160190	22907691	Breitfeld J	2012-08-21	Int J Obes (Lond)	Genetic variation in the vaspin gene affects circulating serum vaspin concentrations.	Vaspin levels	826 European ancestry individuals	1806 European ancestry individuals	14q32.13	vaspin, serpinA4	rs11160190-G	NR	4E-41		0.037	[NR] unit decrease	Affymetrix [390619]	N
1309	chr14	95022163	95022164	rs12147342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs12147342-T	0.435	2E-39	(Kallistatin, SERPINA4.14105.5.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
1309	chr14	95022163	95022164	rs12147342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs12147342-T	0.435	1E-68	(Kallistatin, SERPINA4.3449.58.2)	0.43	[0.39-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1310	chr14	95027721	95027722	rs882732	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	SERPINA5, SERPINA4	rs882732-A	0.246988	8E-48	(Kallistatin)	0.6674	[0.58-0.75] unit increase	Affymetrix [509946]	N
1310	chr14	95033355	95033356	rs5510	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	14q32.13	NR	rs5510-?	NR	9E-14	(Kallistatin)	0.11	[0.083-0.137] unit increase	Illumina [4020654] (imputed)	N
1310	chr14	95033594	95033595	rs5511	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,361 Icelandic ancestry individuals	NA	14q32.13		rs5511-T	0.2534	2E-135		0.508009	[0.47-0.55] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95034452	95034453	rs5512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,364 Icelandic ancestry individuals	NA	14q32.13		rs5512-G	0.01087	5E-27		0.971902	[0.8-1.15] unit decrease	Illumina [7506463] (imputed)	N
1310	chr14	95034452	95034453	rs5512	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,361 Icelandic ancestry individuals	NA	14q32.13		rs5512-G	0.01087	5E-43		1.21714	[1.04-1.39] unit decrease	Illumina [7506463] (imputed)	N
1310	chr14	95034452	95034453	rs5512	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs5512-G	0.013	8E-23	(Kallistatin, SERPINA4.3449.58.2)	1.14	[0.9-1.38] unit decrease	Affymetrix [10572788] (imputed)	N
1310	chr14	95034452	95034453	rs5512	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	NR	rs5512-G	0.013	1E-15	(Kallistatin, SERPINA4.14105.5.3)	0.93	[0.69-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
1310	chr14	95035373	95035374	rs10139745	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA4	rs10139745-A	0.221	5E-65	(Kallistatin, SERPINA4.14105.5.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
1310	chr14	95035373	95035374	rs10139745	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA4	rs10139745-A	0.221	5E-110	(Kallistatin, SERPINA4.3449.58.2)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1310	chr14	95037777	95037778	rs10146582	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA4	rs10146582-G	0.74078125	7E-49	(SERPINA4, 14105_5_3)	0.41249508	[0.36-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1310	chr14	95038367	95038368	rs10149354	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA4	rs10149354-C	0.74078125	2E-78	(SERPINA4, 3449_58_2)	0.521923	[0.47-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
1310	chr14	95040430	95040431	rs8019677	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA4	5,364 Icelandic ancestry individuals	NA	14q32.13		rs8019677-T	0.2527	9E-86		0.416316	[0.37-0.46] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95040430	95040431	rs8019677	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK13	5,349 Icelandic ancestry individuals	NA	14q32.13		rs8019677-T	0.2527	2E-13		0.150366	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95049083	95049084	rs8009930	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA5	rs8009930-A	0.864375	6E-8	(SERPINA5, 3389_7_2)	0.19109508	[0.12-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95049083	95049084	rs8009930	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs8009930-A	0.864375	1E-9	(SERPINA4, 14105_5_3)	0.21994542	[0.15-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95049083	95049084	rs8009930	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs8009930-A	0.864375	1E-15	(SERPINA4, 3449_58_2)	0.28897727	[0.22-0.36] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95049083	95049084	rs8009930	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs8009930-A	0.864375	1E-12	(GSK3A GSK3B, 3236_12_2)	0.25797832	[0.19-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1310	chr14	95051873	95051874	rs17091116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.13		rs17091116-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1310	chr14	95053862	95053863	rs6118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIGAR	5,357 Icelandic ancestry individuals	NA	14q32.13		rs6118-T	0.1073	8E-21		0.274692	[0.22-0.33] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95053862	95053863	rs6118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD27	5,357 Icelandic ancestry individuals	NA	14q32.13		rs6118-T	0.1073	8E-12		0.201019	[0.14-0.26] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95054011	95054012	rs6119	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MED1	5,360 Icelandic ancestry individuals	NA	14q32.13		rs6119-G	0.1086	6E-77		0.531719	[0.48-0.59] unit increase	Illumina [7506463] (imputed)	N
1310	chr14	95054011	95054012	rs6119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	14q32.13		rs6119-G	0.23746	2E-14		0.0336157	[0.025-0.042] unit decrease	Illumina [13474682] (imputed)	N
1310	chr14	95054011	95054012	rs6119	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.13	SERPINA5	rs6119-G	0.099	6E-70	(Mediator of RNA polymerase II transcription subunit 1, MED1.5470.69.2)	0.69	[0.61-0.77] unit increase	Affymetrix [10572788] (imputed)	N
1310	chr14	95054011	95054012	rs6119	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	14q32.13	SERPINA5	rs6119-?	NR	7E-14		0.03882	[0.029-0.049] unit decrease	Illumina [6108953] (imputed)	N
1310	chr14	95061125	95061126	rs60428566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	14q32.13	NR	rs60428566-T	NR	9E-10		0.0321	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1310	chr14	95061125	95061126	rs60428566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs60428566-T	NR	1E-15		0.0418	[0.032-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1310	chr14	95063173	95063174	rs4062	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA5	5,356 Icelandic ancestry individuals	NA	14q32.13		rs4062-A	0.324	7E-14		0.144302	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1310	chr14	95063173	95063174	rs4062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	14q32.13		rs4062-G	0.401843	4E-10		0.0243059	[0.017-0.032] unit decrease	Illumina [13477433] (imputed)	N
1310	chr14	95067217	95067218	rs10145747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.13	NR	rs10145747-T	NR	2E-11		0.0394	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1310	chr14	95070186	95070187	rs926788	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	14q32.13	SERPINA5, SERPINA3	rs926788-?	NR	2E-11		0.02907	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1310	chr14	95094013	95094014	rs56361564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WNT5A	5,365 Icelandic ancestry individuals	NA	14q32.13		rs56361564-C	0.1831	1E-18		0.206203	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
1310	chr14	95094396	95094397	rs8005845	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	14q32.13	SERPINA3	rs8005845-T	0.73	5E-6		0.047	[0.027-0.067] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1310	chr14	95097302	95097303	rs6575449	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	14q32.13		rs6575449-T	0.18	2E-64		0.1872	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1310	chr14	95097302	95097303	rs6575449	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	SERPINA3, ADIPOR1P2	rs6575449-T	0.1859296	3E-12	(EA, Alpha-1-antichymotrypsin)	0.3768	[0.27-0.48] unit decrease	Affymetrix [509946]	N
1310	chr14	95097302	95097303	rs6575449	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.13	SERPINA3, ADIPOR1P2	rs6575449-T	0.1859296	2E-15	(EA, Alpha-1-antichymotrypsin complex)	0.4323	[0.33-0.54] unit decrease	Affymetrix [509946]	N
1310	chr14	95097555	95097556	rs8023057	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	14q32.13	SERPINA3	rs8023057-A	0.82	2E-15		0.06069	[0.046-0.076] unit increase	Affymetrix [10109774] (imputed)	N
1310	chr14	95107144	95107145	rs56952063	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	14q32.13	SERPINA13P	rs56952063-C	0.08	1E-5		0.9	NR unit decrease	Illumina [336151] (imputed)	N
1310	chr14	95107972	95107973	rs4905226	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	14q32.13	SERPINA13	rs4905226-T	0.24	4E-6	(Age 8)	0.13	[0.071-0.189] unit increase	Illumina [2293137] (imputed)	N
1310	chr14	95112094	95112095	rs61976132	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs61976132-G	0.825	6E-12	(SERPINA3, 2879_9_2)	0.22491634	[0.16-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95112094	95112095	rs61976132	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs61976132-G	0.825	3E-12	(WNT5A, 13268_45_3)	0.22266093	[0.16-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95112094	95112095	rs61976132	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	NR	rs61976132-G	0.825	2E-11	(GSK3A GSK3B, 3236_12_2)	0.21859677	[0.15-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1310	chr14	95115223	95115224	rs56250610	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA3	5,345 Icelandic ancestry individuals	NA	14q32.13		rs56250610-G	0.1633	2E-24		0.244411	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
1310	chr14	95129046	95129047	rs7150987	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.13	SERPINA3	rs7150987-G	0.7353125	3E-7	(SERPINA3, 4153_11_2)	0.14617729	[0.091-0.202] unit increase	Illumina [> 1000000] (imputed)	N
1310	chr14	95143002	95143003	rs67271747	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	14q32.13	NR	rs67271747-?	NR	3E-6		5.21	[3.97-6.83]	Illumina [539000] (imputed)	N
1311	chr14	95186747	95186748	rs8009743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.13		rs8009743-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1311	chr14	95194251	95194252	rs17091358	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	14q32.13	NR	rs17091358-?	NR	8E-6		0.797	[0.7-0.9]	Illumina [NR] (imputed)	N
1311	chr14	95208411	95208412	rs8013382	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		14q32.13	GSC	rs8013382-G	NR	3E-9		0.0474667	NR unit decrease	NR [NR] (imputed)	N
1311	chr14	95222910	95222911	rs74898987	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	14q32.13	NR	rs74898987-A	0.006419	1E-6		0.916	[0.55-1.29] unit decrease	Illumina [10677593] (imputed)	N
1311	chr14	95237214	95237215	rs61977111	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q32.13	NR	rs61977111-C	0.133032	4E-14		0.0349266	[0.026-0.044] unit decrease	NR [19129689] (imputed)	N
1311	chr14	95283219	95283220	rs57602116	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	14q32.13	Intergenic	rs57602116-A	NR	3E-7	(between families)	5.136	unit increase	Affymetrix [up to 15107142] (imputed)	N
1312	chr14	95316778	95316779	rs116731241	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	14q32.13	intergenic	rs116731241-?	NR	2E-6		1.427	[0.7-2.16] unit increase	Illumina [at least 13000000] (imputed)	N
1312	chr14	95333677	95333678	rs2224309	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	14q32.13	GSC, DICER1	rs2224309-?	NR	4E-9		0.031	[0.041-0.021] unit decrease	Illumina [12039491] (imputed)	N
1312	chr14	95347760	95347761	rs1243550	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	14q32.13	NR	rs1243550-?	NR	3E-6		0.1714	[0.098-0.245] unit decrease	Illumina [at least 560000] (imputed)	N
1312	chr14	95370325	95370326	rs947116	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.13	DICER1	rs947116-?	NR	6E-6	(LPC 20:5)	0.16563658	[0.094-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
1312	chr14	95379498	95379499	rs1243572	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	14q32.13	GSC	rs1243572-G	0.42	4E-10		1.2		Illumina [803202]	N
1312	chr14	95383069	95383070	rs714286	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	14q32.13	NR	rs714286-?	NR	9E-6		3.5714285	[NR]	Illumina [5326313] (imputed)	N
1312	chr14	95385549	95385550	rs1243579	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	14q32.13	Intergenic	rs1243579-G	0.15	3E-14	(hip shape mode 1)	0.12	[0.091-0.149] unit increase	Illumina [7191926] (imputed)	N
1312	chr14	95410528	95410529	rs10133840	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	14q32.13	RPL15P2, DICER1	rs10133840-C	NR	4E-7		0.01	[NR] unit decrease	Affymetrix [706791]	N
1312	chr14	95410528	95410529	rs10133840	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	14q32.13	RPL15P2, DICER1	rs10133840-C	0.14	1E-6	(Hispanic)	0.01	[0.005-0.01] unit decrease	Affymetrix [706791]	N
1313	chr14	95474078	95474079	rs61976526	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	14q32.13	DICER1	rs61976526-G	NR	2E-6	(men)	0.221	[0.13-0.31] unit decrease	Illumina [5527232] (imputed)	N
1313	chr14	95479888	95479889	rs7161418	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	14q32.13	GSC, DICER1	rs7161418-?	NR	1E-9		1.106	[1.070-1.143]	Illumina [13537761] (imputed)	N
1313	chr14	95490824	95490825	rs34877263	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	14q32.13	NR	rs34877263-?	NR	2E-6		1.280489	[1.16-1.42]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1313	chr14	95535229	95535230	rs146768547	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	14q32.13	NR	rs146768547-?	NR	8E-7		1.9677978	[1.50-2.57]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1313	chr14	95539736	95539737	rs10146757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.13		rs10146757-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1314	chr14	95554141	95554142	rs1057035	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.13	CLMN	rs1057035-?	NR	7E-6	(PC 38:5)	0.21324398	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1314	chr14	95555386	95555386	rs35463377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.13	NR	rs35463377-C	0.520264	2E-10		0.0050107	[0.0033-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1314	chr14	95555386	95555386	rs35463377	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.13	NR	rs35463377-C	0.520264	7E-9		0.00528908	[0.0034-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
1314	chr14	95593956	95593957	rs55874297	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.13		rs55874297-?	NR	7E-14		0.0264271	[0.019-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1314	chr14	95593956	95593957	rs55874297	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q32.13	DICER1	rs55874297-G	0.914051	5E-7	(women)	0.0426014	[0.026-0.059] unit increase	NR [17166351] (imputed)	N
1314	chr14	95593956	95593957	rs55874297	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q32.13	DICER1	rs55874297-G	0.913081	3E-10		0.0384349	[0.027-0.05] unit increase	NR [17166351] (imputed)	N
1314	chr14	95596278	95596279	rs1953535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.13		rs1953535-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1314	chr14	95596278	95596279	rs1953535	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.13		rs1953535-?	NR	5E-14		0.0265895	[0.019-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1314	chr14	95610877	95610878	rs7146983	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.13	DICER1	rs7146983-T	0.0869439	3E-18		0.0286057	[0.022-0.035] unit decrease	NR [13737936] (imputed)	N
1314	chr14	95660379	95660380	rs73333233	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	14q32.13	CLMN	rs73333233-T	0.1247	5E-6		1.67	[1.341-2.079]	Affymetrix, Illumina [14074516] (imputed)	N
1314	chr14	95671870	95671871	rs1187614	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	14q32.13	CLMN	rs1187614-?	0.313	2E-7	(perphenazine-total cholesterol)			Affymetrix [492900]	N
1315	chr14	95720677	95720678	rs8014194	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	14q32.13	FLJ45244, DICER1, CLMN	rs8014194-A	0.24	2E-8	(chol, diff)			Illumina [~ 2500000] (imputed)	N
1315	chr14	95764563	95764564	rs115102486	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		14q32.13	CLMN	rs115102486-?	0.03	2E-8		0.31	unit decrease	Illumina [NR] (imputed)	N
1315	chr14	95777150	95777151	rs185938247	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q32.13	CLMN	rs185938247-A	0.0147432426058151	2E-6	(G_Coprococcus_HB)	1.24745	[0.73-1.76] unit decrease	Illumina [7711310] (imputed)	N
1315	chr14	95794913	95794914	rs187852559	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	14q32.13	DICER1, CLMN	rs187852559-?	NR	9E-10	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1316	chr14	95817783	95817784	rs61983008	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.13	NR	rs61983008-G	0.0331	2E-9	(TNC)	0.04261	NR unit increase	Illumina [1671387] (imputed)	N
1316	chr14	95838400	95838401	rs12897644	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	14q32.13	RPL15P2, CLMN, DICER1, SYNE3	rs12897644-?	NR	9E-7		1.54	[0.93-2.15] unit increase	Illumina [1075436] (imputed)	N
1316	chr14	95848293	95848294	rs12432260	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	C14orf139	rs12432260-A	0.056	8E-6	(Trunk fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
1316	chr14	95860796	95860797	rs114351729	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	14q32.13	NR	rs114351729-T	0.02178	3E-6		0.4941	[0.29-0.7] unit increase	Illumina [10677593] (imputed)	N
1316	chr14	95892273	95892274	rs12895389	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	14q32.13	NR	rs12895389-?	0.13	2E-7	(FSH)			Illumina [709211]	N
1316	chr14	95929546	95929547	rs10139467	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q32.13		rs10139467-?	NR	4E-8				NR [NR]	N
1316	chr14	95930457	95930458	rs76828844	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.13	NR	rs76828844-C	0.05749	1E-8	(TNC)	0.0288	NR unit increase	Illumina [1671387] (imputed)	N
1316	chr14	95930477	95930478	rs3783287	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	14q32.13		rs3783287-?	NR	3E-8				NR [NR]	N
1316	chr14	95942446	95942447	rs11622887	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	14q32.13	C14orf49	rs11622887-?	NR	3E-7	(Recessive model)	3.5	[2.20-5.60]	Affymetrix [334127]	N
1317	chr14	95972447	95972448	rs179159	30305637	McMaster ML	2018-10-10	Nat Commun	Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia.	Waldenstrom macroglobulinemia / lymphoplasmacytic lymphoma	217 European ancestry cases, 3,798 European ancestry controls	313 European ancestry cases, 564 European ancestry controls	14q32.13		rs179159-A	0.247	5E-7		1.54	[1.64-3.69]	Illumina [6440053] (imputed)	N
1317	chr14	95973609	95973610	rs179158	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.13	C14orf49	rs179158-?	NR	8E-6	(beta aminoisobutyric acid)	0.19706695	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1317	chr14	95983897	95983898	rs179146	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q32.13	RP11-1070N10.3	rs179146-T	0.2731	3E-10		0.4761	[0.33-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1317	chr14	95983974	95983975	rs179145	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q32.13	RP11-1070N10.3	rs179145-A	0.38	5E-10		0.41	[0.27-0.55] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1317	chr14	95988256	95988257	rs753094189	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	14q32.13	NR	rs753094189-A		4E-7		1.187	[NR] unit increase	Illumina [NR]	N
1317	chr14	95996410	95996411	rs179131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q32.13		rs179131-T	NR	4E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q32.13		rs35362007-A	NR	2E-23		0.0231	[0.019-0.028] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q32.13		rs35362007-A	NR	1E-25		0.0243	[0.02-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	14q32.13		rs35362007-G	0.749	8E-21		0.12	[-0.15--0.1] % decrease	Affymetrix [NR] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.13	GLRX5	rs35362007-A	0.250815	9E-16		0.020950722	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.13	GLRX5	rs35362007-A	0.250905	1E-11		0.01771992	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.13	GLRX5	rs35362007-A	0.250712	1E-29		0.0291152	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.13	GLRX5	rs35362007-A	0.250714	4E-31		0.029838104	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.249471	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.2499	4E-12		0.015057	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.250326	1E-37				Affymetrix, Illumina [24246363] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.249908	8E-38		0.027429	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.250267	2E-36				Affymetrix, Illumina [20825802] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q32.13	NR	rs35362007-A	0.250295	4E-35		0.027796	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.13		rs35362007-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.13		rs35362007-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q32.13	GLRX5	rs35362007-A	0.2513	2E-10		0.0264365	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1317	chr14	96003197	96003198	rs35362007	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q32.13	GLRX5	rs35362007-A	0.2512	5E-10		0.02571205	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1317	chr14	96010588	96010589	rs7120	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.13	GLRX5	rs7120-A	0.277	2E-6	(BMR RQ)	0.03	[NR] unit increase	Illumina [899892]	N
1317	chr14	96027152	96027153	rs8005962	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	14q32.13	NR	rs8005962-?	0.63	8E-6		1.2	[1.11-1.25]	Affymetrix [> 333754] (imputed)	N
1317	chr14	96029867	96029868	rs35436559	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q32.13	NR	rs35436559-?		6E-6				Illumina [4322238] (imputed)	N
1317	chr14	96043545	96043546	rs117972357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Malignant lymphoma	3,546 European ancestry cases, 487,257 European ancestry controls, 335 East Asian ancestry cases, 177,342 East Asian ancestry controls	NA	14q32.13		rs117972357-A	NR	3E-8		1.4366	[0.93-1.95] unit increase	Affymetrix, Illumina [25845276] (imputed)	N
1317	chr14	96043545	96043546	rs117972357	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.13		rs117972357-A	0.00798	4E-8		0.804	[0.52-1.09] unit increase	Illumina [18238287] (imputed)	N
1317	chr14	96051973	96051974	rs117410836	30305637	McMaster ML	2018-10-10	Nat Commun	Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenstrom macroglobulinemia.	Waldenstrom macroglobulinemia / lymphoplasmacytic lymphoma	217 European ancestry cases, 3,798 European ancestry controls	313 European ancestry cases, 564 European ancestry controls	14q32.13		rs117410836-C	0.027	9E-19		4.9	[3.45-6.96]	Illumina [6440053] (imputed)	N
1318	chr14	96088259	96088260	rs7161179	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	14q32.13	GLRX5, TCL6	rs7161179-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1318	chr14	96093846	96093847	rs115169421	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	14q32.13	NR	rs115169421-?	NR	5E-6	(Native Hawaiian)	0.9626	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1318	chr14	96103183	96103184	rs7144361	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q32.13	GLRX5, TCL1B, TCL1A	rs7144361-?		9E-11				Affymetrix, Illumina [NR] (imputed)	N
1318	chr14	96107954	96107955	rs7148498	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	14q32.13	GLRX5	rs7148498-?		1E-6				Illumina [859311]	N
1318	chr14	96122407	96122408	rs8015016	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	14q32.13	TCL6	rs8015016-G	0.20	5E-7		0.18	[0.10-0.26] unit decrease	Illumina [~ 318327]	N
1318	chr14	96158071	96158072	rs73348245	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	14q32.13	NR	rs73348245-G	0.06	2E-6		1.27	1.15-1.40	NR [at least 8482392] (imputed)	N
1318	chr14	96158071	96158072	rs73348245	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	14q32.13	NR	rs73348245-G	0.06	2E-6		1.27	1.15-1.40	NR [at least 8482392] (imputed)	N
1318	chr14	96169130	96169131	rs7158782	20876420	Ingle JN	2010-09-27	J Clin Oncol	Genome-wide associations and functional genomic studies of musculoskeletal adverse events in women receiving aromatase inhibitors.	Adverse response to aromatase inhibitors	293 cases, 585 controls	NA	14q32.13	TCL1A	rs7158782-?	0.11	8E-7		2.13	[1.58-2.87]	Illumina [551395]	N
1318	chr14	96178172	96178173	rs2296311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.13	TCL1A, RP11-164H13.1	rs2296311-A	0.149765	2E-16		0.026181601	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr14	96180241	96180242	rs1122138	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	14q32.13	TCL1A	rs1122138-C	0.84	6E-31		0.005	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1318	chr14	96180694	96180695	rs2887399	27064253	Zhou W	2016-04-11	Nat Genet	Mosaic loss of chromosome Y is associated with common variation near TCL1A.	Mosaic loss of chromosome Y	895 cases, 11,474 controls	NA	14q32.13	TCL1A	rs2887399-G	0.77	6E-11		1.57	[1.36-1.80]	Illumina [2595310]	N
1318	chr14	96180704	96180705	rs139012944	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	14q32.13	TCL1A	rs139012944-C	0.071	4E-8		0.051	NR unit decrease	Illumina [9591901] (imputed)	N
1318	chr14	96182061	96182062	rs728739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.13	NR	rs728739-G	0.149931	7E-12				Affymetrix, Illumina [24588908] (imputed)	N
1318	chr14	96182061	96182062	rs728739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.13	NR	rs728739-G	0.162366	7E-13		0.017989	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1318	chr14	96182061	96182062	rs728739	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	14q32.13	TCL1A, TUNAR	rs728739-G	0.055	4E-18		0.081	NR unit increase	Illumina [9591901] (imputed)	N
1318	chr14	96182061	96182062	rs728739	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	14q32.13	TCL1A, TUNA	rs728739-A	0.84	2E-106		0.035	unit increase	NR [NR]	N
1318	chr14	96198687	96198688	rs11849149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.13		rs11849149-A	NR	1E-10		0.0182	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1318	chr14	96204037	96204038	rs112417369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.13	RP11-164H13.1	rs112417369-C	0.165923	6E-11		0.020048106	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1318	chr14	96205837	96205838	rs77762131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.13		rs77762131-C	0.04503	9E-9		0.3287	[0.22-0.44] unit increase	Illumina [18238287] (imputed)	N
1318	chr14	96205837	96205838	rs77762131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.13		rs77762131-C	0.04503	3E-8		0.3229	[0.21-0.44] unit increase	Illumina [18238287] (imputed)	N
1318	chr14	96205837	96205838	rs77762131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.13		rs77762131-C	0.04503	1E-9		0.3532	[0.24-0.47] unit increase	Illumina [18238287] (imputed)	N
1318	chr14	96205837	96205838	rs77762131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.13		rs77762131-C	0.04502	4E-9		0.3388	[0.23-0.45] unit increase	Illumina [18238311] (imputed)	N
1318	chr14	96206069	96206070	rs2369304	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	14q32.13	AL139020.1	rs2369304-?	NR	9E-6				Illumina [874956]	N
1319	chr14	96278662	96278663	rs72698961	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	14q32.2	intergenic	rs72698961-G	0.027	6E-7		5.128	[2.701-9.734]	Illumina [7585874] (imputed)	N
1319	chr14	96306549	96306550	rs28576539	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	14q32.2	LINC00617	rs28576539-?	NR	3E-6		0.156	[0.097-0.215] unit decrease	Illumina [6319684] (imputed)	N
1319	chr14	96336961	96336962	rs72700909	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.2	NR	rs72700909-G	0.04878	1E-8	(CLIC4)	0.01578	NR unit increase	Illumina [1671387] (imputed)	N
1320	chr14	96343124	96343125	rs567154526	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	14q32.2		rs567154526-T	0.0065626	3E-6		0.19345	[0.11-0.27] unit increase	Affymetrix [15580782] (imputed)	N
1320	chr14	96389330	96389331	rs3811345	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	14q32.2	LINC00617	rs3811345-A	NR	4E-7	(%LAA-950, Cases)	0.16	[0.1-0.22] unit increase	Illumina [7600000] (imputed)	N
1320	chr14	96389330	96389331	rs3811345	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	14q32.2	LINC00617	rs3811345-A	NR	2E-6	(Perc15, Cases)	3.4	[2.03-4.77] unit decrease	Illumina [7600000] (imputed)	N
1320	chr14	96443957	96443958	rs71415016	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	14q32.2	C14orf132	rs71415016-?	NR	3E-7		1.38	[1.20-1.59]	Illumina [NR] (imputed)	N
1321	chr14	96508776	96508777	rs7147874	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	BDKRB1	rs7147874-?	NR	4E-6	(gentisic acid)	0.17947982	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1321	chr14	96510277	96510278	rs143569685	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	8674 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry women	NA	14q32.2		rs143569685-A	0.004	1E-8		3.92	kg decrease	NR [638486]	N
1321	chr14	96510277	96510278	rs143569685	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	3145 African American or Afro-Caribbean individuals	NA	14q32.2		rs143569685-A	0.014	8E-6		3.57	kg decrease	NR [638486]	N
1321	chr14	96510277	96510278	rs143569685	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	2158 African American or Afro-Caribbean women	NA	14q32.2		rs143569685-A	0.015	4E-7		3.93	kg decrease	NR [638486]	N
1321	chr14	96510277	96510278	rs143569685	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	13,552 European, African American or Afro-Caribbean, Hispanic or Latin American, Asian, Native American, Other ancestry individuals	NA	14q32.2		rs143569685-A	0.003	8E-7		3.57	kg decrease	NR [638486]	N
1321	chr14	96558912	96558913	rs34807349	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	14q32.2	C14orf132	rs34807349-?	NR	7E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1322	chr14	96611270	96611271	rs34485356	34384552	Ghouse J	2021-08-01	J Am Coll Cardiol	Association of Variants Near the Bradykinin Receptor B<sub>2</sub> Gene With Angioedema in Patients Taking ACE Inhibitors.	Angioedema in response to angiotensin-converting enzyme inhibitor	462 European ancestry ACE inhibitor-associated angioedema cases, 53,391 European ancestry ACE inhibitor-exposed controls	142 European ancestry ACE inhibitor-associated angioedema cases, 1,345 European ancestry ACE inhibitor-exposed controls	14q32.2		rs34485356-T	0.77	1E-10		1.62	[1.4-1.87]	Illumina [NR] (imputed)	N
1322	chr14	96632991	96632992	rs76881547	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	14q32.2	C14orf132, BDKRB2	rs76881547-T	0.091	5E-6		0.033	[0.019-0.047] unit decrease	Illumina [7358575] (imputed)	N
1322	chr14	96642646	96642647	rs7158214	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q32.2	intergenic	rs7158214-?	NR	4E-6		0.133	[0.06-0.206] unit increase	Illumina [at least 13000000] (imputed)	N
1322	chr14	96645142	96645143	rs4384548	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	14q32.2	BDKRB2	rs4384548-A	0.02	5E-8	(women)	232.19	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1322	chr14	96659918	96659919	rs11160318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q32.2		rs11160318-A	NR	1E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1322	chr14	96659918	96659919	rs11160318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	14q32.2	C14orf132, BDKRB2	rs11160318-G	0.68	5E-12		1.1	[1.08-1.11]	Illumina [at least 560000] (imputed)	N
1322	chr14	96678973	96678974	rs4900312	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	14q32.2	BDKRB2, RP11-404P21.8, RP11-404P21.5	rs4900312-A	0.02	5E-6	(male)	0.648	[0.37-0.92] unit increase	Illumina [6380737] (imputed)	N
1322	chr14	96678973	96678974	rs4900312	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	14q32.2	BDKRB2, RP11-404P21.8, RP11-404P21.5	rs4900312-A	0.02	9E-6	(male)	3.56	[2.01-5.11] unit increase	Illumina [6380737] (imputed)	N
1322	chr14	96690827	96690828	rs56274409	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		14q32.2	BDKRB2	rs56274409-A	0.944	7E-6		0.028	[0.016-0.04] dioptres decrease	NR [5901671] (imputed)	N
1322	chr14	96708781	96708782	rs2069590	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	14q32.2	BDKRB2	rs2069590-?		1E-7				Illumina [479403]	N
1323	chr14	96741570	96741571	rs189358636	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	14q32.2		rs189358636-A	0.013195	5E-7		2.2256844	NR	Affymetrix [7846216] (imputed)	N
1323	chr14	96829997	96829998	rs35946663	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	14q32.2		rs35946663-?	NR	9E-6				Illumina [3311160] (imputed)	N
1323	chr14	96829997	96829998	rs35946663	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	14q32.2	ATG2B, GSKIP	rs35946663-?	NR	5E-6		1.272462	[1.147109-1.411514]	Illumina [at least 4756722] (imputed)	N
1324	chr14	96864373	96864374	rs41317306	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	34,419 European ancestry men	NA	14q32.2		rs41317306-T	0.98	2E-8		0.137	[0.09-0.184] unit decrease	Affymetrix [8918919] (imputed)	N
1324	chr14	96869191	96869192	rs8008113	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	14q32.2	AK7	rs8008113-T	0.04	7E-6	(male)	0.113	[0.064-0.162] unit decrease	Illumina [6380737] (imputed)	N
1324	chr14	96872827	96872828	rs76034026	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	14q32.2	AK7	rs76034026-C	0.0066	2E-6		0.3829	[0.23-0.54] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1324	chr14	96906739	96906740	rs73349296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q32.2		rs73349296-T	NR	4E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1324	chr14	96933413	96933414	rs55981844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	14q32.2		rs55981844-C	NR	1E-12		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1324	chr14	96933413	96933414	rs55981844	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q32.2	NR	rs55981844-T	0.700021	1E-18		0.0196074	[0.015-0.024] unit increase	NR [NR]	N
1324	chr14	96957337	96957338	rs199610398	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	14q32.2	NR	rs199610398-?	NR	3E-6		0.4725	NR	Illumina [at least 560000] (imputed)	N
1324	chr14	96979313	96979314	rs11623142	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	AK7	rs11623142-?	NR	8E-7	(SM 14:0)	0.20026554	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1325	chr14	97045170	97045171	rs56960368	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	14q32.2	NR	rs56960368-G	0.808941	3E-10		0.0158818	[0.011-0.021] unit decrease	NR [NR]	N
1325	chr14	97053923	97053924	rs17280262	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	14q32.2	intergenic	rs17280262-?		4E-6	(overall survival)	2.66	[1.75-4.04]	Illumina [729737]	N
1325	chr14	97053923	97053924	rs17280262	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	14q32.2	intergenic	rs17280262-?		1E-7	(disease-free survival)	3.02	[2.00-4.55]	Illumina [729737]	N
1325	chr14	97103806	97103807	rs17094273	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	14q32.2	intergenic	rs17094273-A	NR	9E-8		0.2	[0.12-0.28] tanning ability score increase	Illumina [528173]	N
1325	chr14	97103852	97103853	rs234574	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	14q32.2	NR	rs234574-T	0.38	2E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
1326	chr14	97131991	97131992	rs1957819	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Number of stillbirths in continuous marriage	593 Tibetan ancestry individuals	NA	14q32.2	PAPOLA	rs1957819-T		8E-9		0.284	[NR] unit increase	Illumina [~ 3500000] (imputed)	N
1326	chr14	97171074	97171075	rs17244419	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	14q32.2	VRK1	rs17244419-T	0.03098	8E-6	(Phonemic Fluency)	8.6504	[4.89-12.41] unit decrease	Affymetrix [> 371951] (imputed)	N
1326	chr14	97171175	97171176	rs7140891	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	14q32.2	NR	rs7140891-?	NR	2E-6		0.0266	[0.016-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1326	chr14	97244454	97244455	rs17280534	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	14q32.2	PAPOLA, VRK1	rs17280534-?	NR	6E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
1327	chr14	97345805	97345806	rs4905558	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	14q32.2	VRK1	rs4905558-?	NR	8E-6				Illumina [874956]	N
1328	chr14	97393684	97393685	rs8016620	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.2	intergenic	rs8016620-G	0.033	5E-6	(Total cysteine )	0.03	[NR] umol/L increase	Illumina [899892]	N
1328	chr14	97394899	97394900	rs17191520	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.2	NR	rs17191520-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1328	chr14	97406570	97406571	rs113159747	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	14q32.2		rs113159747-C	NR	7E-7		1.532	unit increase	Illumina [NR] (imputed)	N
1328	chr14	97480713	97480714	rs142225302	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	14q32.2	intergenic	rs142225302-?	0.02	8E-6	(adjusted for CYP2C19*2)	0.5	NR unit increase	Illumina [5009928] (imputed)	N
1328	chr14	97483210	97483211	rs140497518	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	14q32.2	intergenic	rs140497518-?	0.02	9E-6	(adjusted for CYP2C19*2)	0.49	NR unit increase	Illumina [5009928] (imputed)	N
1328	chr14	97517061	97517062	rs17762577	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	14q32.2	VRK1	rs17762577-T	0.467	6E-6		0.955	[0.54-1.37] unit decrease	Illumina [3515000] (imputed)	N
1328	chr14	97517061	97517062	rs17762577	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	14q32.2	LINC00618	rs17762577-T	0.4514	2E-6		0.0073	[0.0044-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
1329	chr14	97523744	97523745	rs724210	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	14q32.2	intergenic	rs724210-C	0.33	8E-7	(NESPAS-ICR)			Illumina [515966]	N
1329	chr14	97525874	97525875	rs13379080	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	PAPOLA	rs13379080-?	NR	4E-6	(suberic acid)	0.2926464	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1329	chr14	97533361	97533362	rs8020941	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	14q32.2	NR	rs8020941-?	0.78	9E-6	(African American, dominant)	1.5625	[1.28-1.92]	Affymetrix [NR]	N
1329	chr14	97536466	97536467	rs2629514	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	14q32.2	VRK1	rs2629514-G	0.05	3E-7	(male)	0.2	[0.12-0.28] unit increase	Illumina [11973598] (imputed)	N
1329	chr14	97541629	97541630	rs78807545	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	14q32.2	LINC00618, VRK1	rs78807545-T	NR	8E-6	(sleep efficiency, weekdays)	4.7	[2.64-6.76] unit decrease	Affymetrix [7141204] (imputed)	N
1329	chr14	97544215	97544216	rs7151571	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	PAPOLA	rs7151571-?	NR	2E-6	(PC 36:4)	2.15748	[1.27-3.05] unit increase	Affymetrix [at least 2500000] (imputed)	N
1329	chr14	97544572	97544573	rs2144051	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	14q32.2	intergenic	rs2144051-G	NR	4E-6		3.56	[NR]	Illumina [up to 9792010] (imputed)	N
1329	chr14	97582350	97582351	rs59703356	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.2	NR	rs59703356-T	0.01394	2E-8	(CPQ)	0.02036	NR unit increase	Illumina [1671387] (imputed)	N
1329	chr14	97609901	97609902	rs138064340	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	14q32.2	Intergenic	rs138064340-C	0.997	6E-8	(AA)	1.07	NR unit increase	Illumina [NR] (imputed)	N
1329	chr14	97623217	97623218	rs60716536	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	14q32.2	intergenic	rs60716536-A	NR	3E-6		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1330	chr14	97661136	97661137	rs186511597	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	14q32.2	Intergenic	rs186511597-T	NR	3E-6		0.612448	[0.36-0.87] unit increase	Illumina [13519193] (imputed)	N
1330	chr14	97680818	97680819	rs1998998	33436679	Chou YC	2021-01-12	Sci Rep	Integration of genome-wide association study and expression quantitative trait locus mapping for identification of endometriosis-associated genes.	Endometriosis	126 Taiwanese ancestry cases, 96 Taiwanese ancestry controls	133 Taiwanese ancestry cases, 75 Taiwanese ancestry controls	14q32.2	NR	rs1998998-A	0.1294	7E-6		2.277	[1.567-3.31]	Affymetrix [4566885] (imputed)	N
1330	chr14	97762649	97762653	rs142252570	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	14q32.2	intergenic	rs142252570-CTAAT	0.82	2E-9	(japanese)	0.07	[0.05-0.09] year increase	Illumina [at least 532488] (imputed)	N
1330	chr14	97769833	97769834	rs10145469	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	14q32.2	NR	rs10145469-C	0.8157	3E-9	(Japanese)	0.068	[0.046-0.09] year increase	Illumina [at least 532488] (imputed)	N
1330	chr14	97773546	97773547	rs55658396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.2		rs55658396-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1331	chr14	97822864	97822865	rs234439	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	14q32.2	NR	rs234439-G	0.79	3E-6		1.78	[1.39-2.26]	Illumina [17125421] (imputed)	N
1331	chr14	97856377	97856378	rs73371357	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q32.2	intergenic	rs73371357-?	NR	3E-6		0.325	[0.17-0.48] unit decrease	Illumina [at least 13000000] (imputed)	N
1331	chr14	97908685	97908686	rs150511909	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	14q32.2	Intergenic	rs150511909-T	NR	4E-9	(between families)	5.892	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1332	chr14	97987856	97987857	rs8022296	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	14q32.2	LOC100129345	rs8022296-G	0.608	7E-6	(Recessive model)	1.269	[1.058-1.521]	Illumina [733202]	N
1332	chr14	98034568	98034569	rs117443878	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	14q32.2	Intergenic	rs117443878-?	NR	5E-6				Illumina [NR] (imputed)	N
1332	chr14	98034568	98034569	rs117443878	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	14q32.2	Intergenic	rs117443878-?	NR	8E-7		2.7	[1.74-4.17]	Illumina [NR] (imputed)	N
1333	chr14	98169325	98169326	rs10140052	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Taste perception (total score including phenylthiocarbamide) in obesity with metabolic syndrome	369 individuals	NA	14q32.2	intergenic	rs10140052-C	0.173	9E-6	(adjusted for sex and age)	1.746	[0.94-2.55] unit increase	Illumina [622468]	N
1334	chr14	98186212	98186213	rs147171116	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q32.2	RP11-204N11.1	rs147171116-A	0.0278745669589687	3E-6	(G_unclassified_P_Firmicutes_HB)	0.905757	[0.53-1.29] unit decrease	Illumina [7711310] (imputed)	N
1334	chr14	98237765	98237766	rs1462268	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.2	NR	rs1462268-?	NR	7E-33				Affymetrix [NR]	N
1334	chr14	98260875	98260876	rs1999613	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.2	NR	rs1999613-?	NR	5E-41				Affymetrix [NR]	N
1334	chr14	98300113	98300114	rs2781388	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	14q32.2	intergenic	rs2781388-G	NR	9E-6		1.1629936		Illumina [1233578] (imputed)	N
1334	chr14	98303330	98303331	rs1471356	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	14q32.2	LOC100132612	rs1471356-?	0.23	9E-6				Affymetrix, Illumina [1348798]	N
1335	chr14	98325345	98325346	rs2615453	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	14q32.2	NR	rs2615453-A	NR	2E-6		0.01187	[0.0069-0.0168] unit increase	Illumina [~ 540852]	N
1335	chr14	98342602	98342603	rs10130842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs10130842-C	NR	1E-11		0.019814	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98342602	98342603	rs10130842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs10130842-C	NR	2E-12		0.020519	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98344661	98344662	rs2124307	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	14q32.2	NR	rs2124307-T	0.3719	6E-7		0.0091	[0.0056-0.0126] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr14	98348506	98348507	rs2604988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	14q32.2	NR	rs2604988-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1335	chr14	98351289	98351290	rs1379227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	14q32.2		rs1379227-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1335	chr14	98351516	98351517	rs2859997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs2859997-T	NR	4E-8		0.0166791	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1335	chr14	98351516	98351517	rs2859997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs2859997-T	NR	5E-9		0.017721	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1335	chr14	98358463	98358464	rs145410457	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.2	NR	rs145410457-?	NR	3E-6		4.682	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1335	chr14	98359360	98359361	rs200469939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs200469939-G	NR	8E-14		0.022669	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
1335	chr14	98359360	98359361	rs200469939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs200469939-G	NR	3E-9		0.0174055	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1335	chr14	98362354	98362355	rs2925128	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs2925128-T	0.385	6E-10		0.00699912	[0.0048-0.0092] unit increase	NR [9732723] (imputed)	N
1335	chr14	98362354	98362355	rs2925128	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q32.2	NR	rs2925128-T	0.385191	4E-10	(Conditioned on chr14:98597552)	0.016819905	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
1335	chr14	98362354	98362355	rs2925128	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	14q32.2	NR	rs2925128-T	0.3698	1E-11		0.0125	[0.009-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1335	chr14	98378650	98378651	rs1563336	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	VRK1	rs1563336-?	NR	9E-6	(lysine)	0.32391796	[0.18-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
1335	chr14	98384536	98384537	rs1989285	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	14q32.2	C14orf64	rs1989285-G	NR	5E-8	(nasion-pronasale distance)	0.104	NR unit decrease	Illumina [7029494] (imputed)	N
1335	chr14	98390607	98390607	rs751706906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs751706906-CA	NR	1E-9		0.0172545	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98390607	98390607	rs751706906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs751706906-CA	NR	4E-10		0.0178215	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98396292	98396293	rs11622947	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q32.2	C14orf64	rs11622947-C	0.458866	3E-8		0.0105963	[0.0068-0.0144] unit increase	Affymetrix [NR] (imputed)	N
1335	chr14	98400745	98400746	rs1456998	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs1456998-C	NR	5E-9		0.0173241	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1335	chr14	98424700	98424701	rs12437330	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	14q32.2	LINC01550	rs12437330-A	NR	2E-6	(women)	0.209	[0.12-0.3] unit decrease	Illumina [5527232] (imputed)	N
1335	chr14	98431155	98431156	rs1551540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs1551540-T	NR	3E-8		0.0189237	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98431155	98431156	rs1551540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs1551540-T	NR	3E-8		0.0189863	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1335	chr14	98431155	98431156	rs1551540	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs1551540-T	NR	3E-8		0.0197664	[0.013-0.027] unit increase	Affymetrix [321788] (imputed)	N
1336	chr14	98436636	98436637	rs2616764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	14q32.2	C14orf64	rs2616764-A	NR	1E-9		0.0182819	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1336	chr14	98436636	98436637	rs2616764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	14q32.2	C14orf64	rs2616764-A	NR	4E-10		0.0189219	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1336	chr14	98437510	98437511	rs113127926	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	14q32.2	NR	rs113127926-C		2E-6		0.1982	[0.12-0.28] SD units decrease	NR [10700000] (imputed)	N
1336	chr14	98463156	98463157	rs7140601	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	14q32.2	LOC100132612	rs7140601-?		7E-7	(AA)			Illumina [NR]	N
1336	chr14	98486544	98486545	rs10142119	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.f. specific)	404 Korean ancestry D.f.-positive cases, 473 Korean ancestry D.f.-negative cases	NA	14q32.2	LOC730217	rs10142119-G	0.516	2E-7		1.96	[1.52-2.56]	Illumina [442089]	N
1336	chr14	98488006	98488007	rs1456988	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	14q32.2	Intergenic	rs1456988-G	0.27	3E-8		1.12		Illumina [135870]	N
1336	chr14	98488006	98488007	rs1456988	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	14q32.2	intergenic	rs1456988-?	0.53	5E-9		1.12	[1.09-1.18]	Illumina [8019905] (imputed)	N
1336	chr14	98498950	98498951	rs4900384	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	14q32.2	intergenic	rs4900384-G	0.29	4E-9		1.09	[1.02-1.16]	Affymetrix, Illumina [841622] (imputed)	N
1336	chr14	98499457	98499458	rs10144042	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	14q32.2	C14orf177	rs10144042-A	0.24	2E-6	(percent change)	1.4	[0.62-2.18] percent decrease	Illumina [796174]	N
1336	chr14	98501876	98501877	rs12886000	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	14q32.2	LINC01550	rs12886000-T	0.105538	3E-8		5.52	z score increase	NR [~ 10847151] (imputed)	N
1336	chr14	98522674	98522675	rs75989961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q32.2		rs75989961-G	NR	5E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1336	chr14	98532539	98532540	rs710284	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q32.2	C14orf177	rs710284-T	0.5797	2E-8		1.0222437		Affymetrix [11880941] (imputed)	N
1336	chr14	98532539	98532540	rs710284	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	14q32.2	NR	rs710284-C	0.416	4E-11		0.0146211	[0.01-0.019] unit increase	NR [9732723] (imputed)	N
1336	chr14	98538622	98538623	rs10484133	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.2		rs10484133-C	0.23	1E-22		9.78	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q32.2	NR	rs17698580-T	0.260437	3E-9		0.042623125	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q32.2		rs17698580-?	NR	2E-10				NR [7857346] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.2	Intergenic	rs17698580-T	0.7475	5E-8	(MTAG)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q32.2	Intergenic	rs17698580-T	0.7503	5E-11	(MTAG)	0.0174	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q32.2	Intergenic	rs17698580-T	0.7503	2E-9		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1336	chr14	98546910	98546911	rs17698580	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.2	NR	rs17698580-T	NR	2E-9		5.991	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1336	chr14	98547747	98547748	rs10145335	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.2	ENSG00000259097	rs10145335-A	NR	2E-9		6.029	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1336	chr14	98547747	98547748	rs10145335	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q32.2	ENSG00000259097	rs10145335-A	NR	1E-9		0.020634495	[0.014-0.027] unit decrease	Affymetrix [NR]	N
1336	chr14	98549382	98549383	rs10782490	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q32.2	C14orf177	rs10782490-T	0.5315	5E-19		0.021143857	[0.016-0.026] unit decrease	Affymetrix [11515109] (imputed)	N
1336	chr14	98550489	98550490	rs12436785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.2	NR	rs12436785-C	0.416258	7E-16		0.0105394	[0.008-0.0131] unit increase	Affymetrix [16578495] (imputed)	N
1336	chr14	98550489	98550490	rs12436785	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q32.2	NR	rs12436785-C	0.41672699999999996	3E-26		0.0300452	[0.024-0.036] unit increase	Affymetrix [16580851] (imputed)	N
1336	chr14	98550529	98550530	rs74078236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q32.2		rs74078236-T	NR	6E-16		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1336	chr14	98554683	98554684	rs28740872	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	14q32.2	NR	rs28740872-T	0.372523	1E-8		1.082	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1337	chr14	98582624	98582625	rs77987546	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	14q32.2	NR	rs77987546-T	0.38	7E-9		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [at least 500527] (imputed)	N
1337	chr14	98586161	98586162	rs7161578	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	14q32.2	C14orf177	rs7161578-T	0.39	4E-8		0.04	[0.03-0.04] unit increase	Illumina [at least 560000] (imputed)	N
1337	chr14	98587629	98587630	rs9323988	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	14q32.2	RP11-61O1.1	rs9323988-T	0.63	4E-11		0.212	[0.15-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1337	chr14	98587634	98587635	rs77556698	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.2		rs77556698-T	0.23	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
1337	chr14	98588320	98588321	rs7152623	22068335	Mitchell GF	2011-11-08	Circ Cardiovasc Genet	Common genetic variation in the 3'-BCL11B gene desert is associated with carotid-femoral pulse wave velocity and excess cardiovascular disease risk: the AortaGen Consortium.	Aortic stiffness	4,216 Sardinian individuals, 20,634 European ancestry individuals	5,306 European ancestry individuals	14q32.2	BCL11B	rs7152623-?	NR	3E-15		0.076	[0.056-0.096] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1337	chr14	98588459	98588460	rs7152970	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.2		rs7152970-A	0.23	3E-18		8.71	z score increase	Affymetrix [9061022] (imputed)	N
1337	chr14	98588734	98588735	rs10147464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.2		rs10147464-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1337	chr14	98589391	98589392	rs8020355	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.2	NR	rs8020355-T	0.2144	5E-8				NR [9056863] (imputed)	N
1337	chr14	98589391	98589392	rs8020355	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.2	NR	rs8020355-T	0.2144	1E-13				NR [9056863] (imputed)	N
1337	chr14	98596554	98596555	rs76659130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q32.2	RP11-61O1.1	rs76659130-A	0.207065	1E-9		0.01676607	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr14	98597419	98597420	rs76715069	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	14q32.2	LINC01550	rs76715069-G	0.791881	2E-14		0.0195856	[0.015-0.025] unit increase	NR [16516521] (imputed)	N
1337	chr14	98597422	98597422	rs367700296	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q32.2	C14orf64, C14orf177	rs367700296-G		1E-8		0.274	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q32.2		rs1381287-C	0.543	8E-30		0.014	[0.012-0.016] unit decrease	NR [NR] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q32.2	C14orf177	rs1381287-T	0.47	1E-16		0.0098	[0.0074-0.0122] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs1381287-T	0.467	3E-17		0.00921863	[0.0071-0.0114] unit increase	NR [9732723] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q32.2	NR	rs1381287-T	0.467	2E-12		0.01801658	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	14q32.2	NR	rs1381287-T	0.456905	1E-6		0.0050533	[0.003-0.0071] unit increase	Affymetrix [7736308] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	14q32.2	RP11-61O1.1	rs1381287-T	0.46	1E-8		1.023	[1.015-1.032]	Affymetrix [7736308] (imputed)	N
1337	chr14	98597551	98597552	rs1381287	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	14q32.2	NR	rs1381287-T	0.45	3E-6		0.025	[0.015-0.035] unit increase	Affymetrix [NR] (imputed)	N
1337	chr14	98603850	98603851	rs1461587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q32.2		rs1461587-G	NR	4E-11		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1337	chr14	98616921	98616922	rs28415454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	14q32.2		rs28415454-T	NR	1E-8		0.0571	[0.037-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1337	chr14	98619967	98619968	rs17700977	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	14q32.2	C14orf177	rs17700977-A	0.4069	6E-9		0.011473901	[0.0076-0.0153] unit increase	Illumina [9339358] (imputed)	N
1337	chr14	98621511	98621512	rs10139768	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	14q32.2	NR	rs10139768-T	0.396	3E-9		0.0092912	[0.0062-0.0124] unit increase	NR [9732723] (imputed)	N
1337	chr14	98631170	98631171	rs8009025	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	14q32.2	RP11-61O1.1	rs8009025-C	0.206232	1E-8		0.057095397	[0.038-0.077] unit increase	Affymetrix [7288503] (imputed)	N
1337	chr14	98631170	98631171	rs8009025	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.2	intergenic	rs8009025-C	0.7962	4E-12		0.2831	[0.2-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
1337	chr14	98632614	98632615	rs75791745	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	14q32.2	NA	rs75791745-T		1E-8		0.0128182	[0.0084-0.0172] unit decrease	Illumina [13288253] (imputed)	N
1337	chr14	98637994	98637995	rs1461583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.2	Intergenic	rs1461583-A	0.7996	4E-8	(MTAG)	0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1337	chr14	98637995	98637996	rs1461584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q32.2	RP11-61O1.1	rs1461584-G	0.204741	6E-9		0.016014736	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1337	chr14	98641214	98641215	rs7152530	24847357	Ye Z	2014-05-09	Front Genet	Genome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections.	Staphylococcus aureus infection	309 European ancestry cases, 2,925 European ancestry controls	NA	14q32.2	VRK1, BCL11B	rs7152530-G	0.633254	8E-7		1.61	[1.33-1.96]	Illumina [508921]	N
1337	chr14	98642571	98642572	rs10484128	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	14q32.2	intergenic	rs10484128-?	0.15	6E-6	(pltadp)			Affymetrix [70897]	N
1337	chr14	98643862	98643863	rs77653640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q32.2	NR	rs77653640-A	0.19368	6E-11		0.015717	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1337	chr14	98647549	98647550	rs17775184	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.2	intergenic	rs17775184-T	0.2024	5E-11		0.2067	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1337	chr14	98649128	98649129	rs79470265	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.2	ENSG00000259097	rs79470265-A	NR	6E-9		5.807	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1337	chr14	98650987	98650988	rs7160389	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	14q32.2	C14orf177	rs7160389-T	0.5355	4E-9		0.011882559	[0.0079-0.0158] unit decrease	Affymetrix [11514654] (imputed)	N
1337	chr14	98650987	98650988	rs7160389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.2		rs7160389-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q32.2		rs1381274-T	NR	2E-10		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q32.2	RP11-61O1.1	rs1381274-T	0.463081	5E-10		0.013811847	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.2	RP11-61O1.1	rs1381274-T	0.463085	2E-9		0.013235512	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	14q32.2	C14orf177	rs1381274-T	0.4628	6E-13		0.018584875	[0.014-0.024] unit increase	Affymetrix [~ 11515000] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	14q32.2	NR	rs1381274-T	0.474	1E-10		0.00944932	[0.0066-0.0123] unit decrease	NR [9732723] (imputed)	N
1337	chr14	98655130	98655131	rs1381274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	14q32.2		rs1381274-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1337	chr14	98668617	98668618	rs34440630	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q32.2	NR	rs34440630-?		7E-6				Illumina [4322238] (imputed)	N
1337	chr14	98668778	98668780	rs142903734	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	14q32.2	RP11-61O1.1	rs142903734-AAG	0.79	7E-9		1.12		Illumina, Perlegen [9113515] (imputed)	N
1337	chr14	98668778	98668778	rs775809675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q32.2	NR	rs775809675-D	0.208666	3E-10		0.015945	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1337	chr14	98670157	98670158	rs857228	22445761	Kurose K	2012-03-23	Psychiatry Res	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NA	14q32.2	AL163760.3	rs857228-T	0.354	3E-6		2.56	[1.60-4.08]	Affymetrix [186320]	N
1337	chr14	98690393	98690394	rs1257920	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	14q32.2	NR	rs1257920-T	0.479	5E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1337	chr14	98690922	98690923	rs76284431	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q32.2	C14orf177	rs76284431-A	0.1472	1E-9		0.020252265	[0.014-0.027] unit increase	Affymetrix [11515109] (imputed)	N
1337	chr14	98690922	98690923	rs76284431	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q32.2	C14orf177	rs76284431-A	0.153	4E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1337	chr14	98692995	98692996	rs1257926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	14q32.2		rs1257926-A	NR	1E-8		0.0493	[0.032-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1337	chr14	98692995	98692996	rs1257926	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	14q32.2	RP11-61O1.1	rs1257926-A	0.474691	3E-9		0.054403923	[0.036-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1337	chr14	98692995	98692996	rs1257926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	14q32.2		rs1257926-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1339	chr14	98840442	98840443	rs1459148	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	14q32.2	intergenic	rs1459148-?	NR	2E-6	(SAS)			Affymetrix [492000]	N
1339	chr14	98872109	98872110	rs1958801	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	14q32.2	intergenic	rs1958801-?	NR	3E-8		0.0149414	[0.0097-0.0202] unit increase	Affymetrix [25921788] (imputed)	N
1339	chr14	98873073	98873074	rs1542448	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	14q32.2		rs1542448-A	0.362384334	1E-13				Illumina [7417619] (imputed)	N
1339	chr14	98883533	98883534	rs8022455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.2		rs8022455-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1339	chr14	98897383	98897384	rs35099116	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	14q32.2	NR	rs35099116-?	NR	3E-6				Illumina [7427422] (imputed)	N
1339	chr14	98959053	98959054	rs117908734	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	14q32.2	C14orf64, C14orf177	rs117908734-T	0.02	1E-6		3.03	[1.89-4.17] unit decrease	Illumina [8344766] (imputed)	N
1340	chr14	99016765	99016766	rs8017036	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	prednisolone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	14q32.2	LOC105370657	rs8017036-A	0.349	9E-6				Illumina [331281]	N
1340	chr14	99018687	99018688	rs76810699	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	14q32.2		rs76810699-A	0.132640879	3E-9				Illumina [7417619] (imputed)	N
1340	chr14	99056280	99056281	rs78997616	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.2	NR	rs78997616-C	0.0122	1E-8	(CYP8B1)	0.0455	NR unit increase	Illumina [1671387] (imputed)	N
1340	chr14	99086164	99086165	rs8013913	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.2	BCL11B	rs8013913-?	NR	5E-6	(CE 18:0)	0.44478086	[0.25-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1341	chr14	99098932	99098933	rs11845825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.2	NR	rs11845825-A	0.02265	1E-8	(NPC2)	0.05298	NR unit increase	Illumina [1671387] (imputed)	N
1341	chr14	99155530	99155531	rs4905742	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	14q32.2	intergenic	rs4905742-A	0.227	2E-6		0.07	unit increase	Illumina [5510858] (imputed)	N
1341	chr14	99175955	99175956	rs8008898	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs8008898-G	0.694	7E-11		0.00764188	[0.0053-0.0099] unit increase	NR [9732723] (imputed)	N
1341	chr14	99191629	99191630	rs8009773	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate variability traits (RMSSD)	13,767 Hispanic/Latino individuals	4,730 European ancestry individuals, 2,908 African American individuals	14q32.2	C14orf177	rs8009773-A	0.74	3E-7	(Hispanic)	0.048	[0.030-0.066] unit increase	Affymetrix, Illumina [17209892] (imputed)	N
1341	chr14	99192439	99192440	rs17097744	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	14q32.2	C14orf177	rs17097744-C	NR	2E-8	(GO:0042823|BP|05|pyridoxal phosphate biosynthetic process)	5.6328077	NR Z-score increase	Illumina [8100000] (imputed)	N
1342	chr14	99240315	99240316	rs11623713	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	14q32.2	C14orf177	rs11623713-A	0.043	8E-6	(Free T3 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1342	chr14	99275536	99275537	rs188595723	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	14q32.2	NR	rs188595723-G	0.02	7E-6		0.99	[0.56-1.42] unit increase	Illumina [9469131] (imputed)	N
1342	chr14	99275536	99275537	rs188595723	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	14q32.2	NR	rs188595723-G	0.01956	2E-6		0.3098676	[0.18-0.44] unit increase	Illumina [9469131] (imputed)	N
1343	chr14	99366689	99366690	rs8022678	30242241	Hachiya T	2018-09-21	Sci Rep	Genome-wide analysis of polymorphism x sodium interaction effect on blood pressure identifies a novel 3'-BCL11B gene desert locus.	Systolic blood pressure x sodium interaction (1df test)	4,527 Japanese ancestry individuals	4,241 Japanese ancestry individuals	14q32.2	NR	rs8022678-G	0.534	4E-9	(recessive model)	0.056	[0.036-0.076] unit decrease	Illumina [7135436] (imputed)	N
1343	chr14	99376292	99376293	rs114666093	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.2	NR	rs114666093-C	0.01394	2E-8	(FNTA)	0.03423	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr14	99384849	99384850	rs11850942	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	14q32.2	Mir_320, BCL11B	rs11850942-G	0.01	7E-8	(Hispanic/Latino)	0.2	[0.12-0.28] unit increase	Illumina [up to 13042663] (imputed)	N
1343	chr14	99410919	99410920	rs148122749	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Thermoprotei abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.2		rs148122749-C	0.0304465	7E-9		0.0545738	[0.036-0.073] unit increase	Illumina [7980478] (imputed)	N
1343	chr14	99437063	99437064	rs151179736	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	14q32.2	Intergenic	rs151179736-?	NR	8E-6		1.26	[1.14-1.39]	Affymetrix, Illumina [39235000] (imputed)	N
1343	chr14	99457436	99457437	rs116002988	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	14q32.2	NR	rs116002988-C	NR	8E-6	(phenotype 2)	2.04	[NR]	Illumina [> 8000000] (imputed)	N
1343	chr14	99479668	99479669	rs4905794	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Systolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	14q32.2	BCL11B	rs4905794-G	0.08	1E-8		4.8	percent decrease	Illumina [631844]	N
1343	chr14	99479668	99479669	rs4905794	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Diastolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	14q32.2	BCL11B	rs4905794-G	0.08	2E-6		4.3	percent decrease	Illumina [631844]	N
1344	chr14	99521391	99521392	rs1257585	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 56)	3,566 European ancestry individuals	4,680 European ancestry individuals	14q32.2		rs1257585-A	0.32925801	7E-11				Illumina [7417619] (imputed)	N
1344	chr14	99547266	99547267	rs2029614	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	14q32.2	RPL3P4, BCL11B	rs2029614-?	NR	6E-6	(FEV1/FVC < 80%)	0.055	[NR] unit increase	Illumina [522636]	N
1344	chr14	99607479	99607480	rs2693676	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	14q32.2	BCL11B	rs2693676-A	NR	7E-6		0.0435	[0.025-0.062] mm decrease	Illumina [1704858] (imputed)	N
1345	chr14	99670790	99670791	rs12885251	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.2	BCL11B	rs12885251-G	0.54166	4E-8		0.00762803	[0.0049-0.0104] unit increase	Affymetrix [12370749]	N
1345	chr14	99672796	99672797	rs2693686	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.2	NA	rs2693686-C	0.6096	6E-11		0.0116	[0.0081-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
1345	chr14	99673277	99673278	rs2614471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.2	NR	rs2614471-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1345	chr14	99681011	99681012	rs7152190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q32.2		rs7152190-A	NR	1E-10		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1345	chr14	99687210	99687211	rs1257444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.2	BCL11B	rs1257444-G	0.540026	3E-14		0.016872443	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1345	chr14	99688669	99688670	rs807734	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs807734-A	0.531	1E-11		0.00733392	[0.0052-0.0094] unit decrease	NR [9732723] (imputed)	N
1345	chr14	99693842	99693843	rs55913542	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	14q32.2	NR	rs55913542-T	0.175	3E-8		0.018562263	[0.012-0.025] unit increase	NR [~ 10000000] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q32.2		rs1257415-A	NR	1E-12		0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q32.2		rs1257415-A	NR	5E-10		0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q32.2		rs1257415-A	NR	3E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q32.2	BCL11B	rs1257415-A	0.505518	3E-12		0.015521414	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	14q32.2	BCL11B	rs1257415-A	0.505532	4E-13		0.01609583	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs1257415-A	0.427288	6E-15				Affymetrix, Illumina [24653286] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs1257415-A	0.42377	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
1345	chr14	99698930	99698931	rs1257415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.2		rs1257415-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1345	chr14	99700079	99700080	rs4082793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q32.2		rs4082793-T	NR	1E-9		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1345	chr14	99700079	99700080	rs4082793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.2		rs4082793-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1345	chr14	99703967	99703968	rs10129264	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	14q32.2	NR	rs10129264-T	0.4314	1E-8		0.063447036	[0.042-0.085] unit decrease	NR [NR]	N
1345	chr14	99707932	99707933	rs3916222	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	14q32.2	NA	rs3916222-T		2E-11		0.0123359	[0.0087-0.0159] unit decrease	Illumina [13288253] (imputed)	N
1345	chr14	99707932	99707933	rs3916222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs3916222-T	0.348398	3E-16				Affymetrix, Illumina [24332387] (imputed)	N
1345	chr14	99707932	99707933	rs3916222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.2	NR	rs3916222-T	0.439684	6E-18		0.016213	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1345	chr14	99707932	99707933	rs3916222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q32.2	NR	rs3916222-T	0.439635	3E-16		0.015289	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1345	chr14	99707932	99707933	rs3916222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q32.2	NR	rs3916222-T	0.440738	5E-14		0.014751	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1345	chr14	99709701	99709702	rs941520	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals			BCL11B	rs941520-A	0.4951	2E-10		0.0523868	[0.036-0.069] unit increase	Affymetrix [8165723] (imputed)	N
1345	chr14	99709701	99709702	rs941520	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA		BCL11B	rs941520-A	0.4975	4E-9		0.011455808	[0.0077-0.0153] unit increase	Illumina [9339358] (imputed)	N
1345	chr14	99711952	99711953	rs1152794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.2		rs1152794-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1345	chr14	99712031	99712032	rs35604463	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	14q32.2	BCL11B	rs35604463-?	NR	2E-8		1.058	[1.04-1.08]	Illumina [8000000] (imputed)	N
1345	chr14	99712944	99712945	rs11624408	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs11624408-?	NR	9E-9				NR [2625067]	N
1345	chr14	99712944	99712945	rs11624408	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs11624408-?		3E-9				NR [520857]	N
1345	chr14	99712944	99712945	rs11624408	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls		BCL11B	rs11624408-A	0.558	5E-8		1.06407	[1.04-1.09]	NR [9372253] (imputed)	N
1345	chr14	99718172	99718173	rs28576256	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.2	NR	rs28576256-G	0.868523	9E-12		0.0133849	[0.0096-0.0171] unit increase	Affymetrix [16578495] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	14q32.2		rs2693698-?	NR	8E-9				NR [2625067]	N
1345	chr14	99719218	99719219	rs2693698	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals		14q32.2	BCL11B	rs2693698-A	0.4577	3E-9		0.049216	[0.033-0.065] unit increase	Affymetrix [8165723] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	14q32.2	BCL11B	rs2693698-A	0.449	2E-8		0.94838	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	14q32.2	NR	rs2693698-?		9E-10				NR [8377093]	N
1345	chr14	99719218	99719219	rs2693698	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q32.2	BCL11B	rs2693698-?		3E-10				NR [6786993] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	14q32.2	NR	rs2693698-?	NR	5E-8				Illumina [up to 5582932] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q32.2	BCL11B	rs2693698-G	NR	5E-8		1.0615711	[1.04-1.08]	Illumina [6627481] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q32.2	BCL11B	rs2693698-G	NR	3E-8	(EA)	1.0636035	[1.04-1.09]	Illumina [6627481] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	14q32.2	BCL11B	rs2693698-G	NR	2E-8		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q32.2	NR	rs2693698-G	NR	1E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1345	chr14	99719218	99719219	rs2693698	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	14q32.2	BCL11B	rs2693698-G	0.582	5E-9		1.0649627	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
1345	chr14	99719679	99719680	rs10150710	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	14q32.2	NR	rs10150710-T	0.4404	3E-8		0.06282982	[0.041-0.085] unit increase	NR [NR]	N
1345	chr14	99722289	99722290	rs34053174	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	14q32.2	NR	rs34053174-?		4E-8				NR [8377093]	N
1345	chr14	99727085	99727086	rs12888948	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	14q32.2	NR	rs12888948-A	0.351	3E-8		0.00866589	[0.0056-0.0117] unit increase	NR [9732723] (imputed)	N
1345	chr14	99727590	99727591	rs10147094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q32.2	NR	rs10147094-A	0.614111	7E-16		0.0219977	[0.016-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1345	chr14	99733953	99733954	rs1405238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.2	Intergenic	rs1405238-T	0.6026	7E-12	(MTAG)	0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr14	99733953	99733954	rs1405238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	14q32.2	Intergenic	rs1405238-C	0.3986	5E-15		0.0181	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1345	chr14	99734983	99734984	rs7146019	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.2		rs7146019-A	0.41	4E-42		13.6	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr14	99734983	99734984	rs7146019	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.2		rs7146019-A	0.41	2E-26		10.65	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr14	99734983	99734984	rs7146019	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.2	NR	rs7146019-A	0.4292	1E-17				NR [9056863] (imputed)	N
1345	chr14	99734983	99734984	rs7146019	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 139)	19,670 European ancestry individuals	NA	14q32.2		rs7146019-?	NR	4E-9				NR [9705931] (imputed)	N
1345	chr14	99734983	99734984	rs7146019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q32.2	NR	rs7146019-G	0.578	2E-8		0.00765154	[0.005-0.0103] unit increase	NR [~ 9732723] (imputed)	N
1345	chr14	99735232	99735233	rs2748809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.2	Intergenic	rs2748809-T	0.5914	7E-21	(MTAG)	0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr14	99735232	99735233	rs2748809	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q32.2	Intergenic	rs2748809-T	0.5698	3E-9	(MTAG)	0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1345	chr14	99741073	99741074	rs2693672	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs2693672-G	0.41	6E-10		0.00681052	[0.0047-0.009] unit decrease	NR [9732723] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.2	BCL11B	rs2664299-?		4E-12				NR [7428630] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	14q32.2	NR	rs2664299-T	NR	6E-9		0.008009	[0.0053-0.0107] unit increase	NR [11010159] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	14q32.2	NR	rs2664299-T	NR	1E-12		0.00750294	[0.0054-0.0096] unit increase	NR [11010159] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	14q32.2	NR	rs2664299-T	NR	4E-12	(adjusted for BMI)	0.00724	[0.0052-0.0093] unit increase	NR [11010159] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	14q32.2	NR	rs2664299-T	0.5813	4E-11		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1345	chr14	99742186	99742187	rs2664299	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.2	NR	rs2664299-C	0.404780828660436	9E-6	(IGP40)	0.1673	[0.094-0.241] unit increase	Illumina [~ 2500000] (imputed)	N
1345	chr14	99743112	99743113	rs2614464	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.2		rs2614464-A	0.42	6E-30		11.36	z score increase	Affymetrix [9061022] (imputed)	N
1345	chr14	99743112	99743113	rs2614464	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.2	NR	rs2614464-A	0.4247	1E-17				NR [9056863] (imputed)	N
1346	chr14	99746273	99746274	rs2614463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q32.2		rs2614463-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1346	chr14	99746273	99746274	rs2614463	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.2	NR	rs2614463-T	0.396310788487282	7E-6	(IGP39)	0.1731	[0.098-0.249] unit increase	Illumina [~ 2500000] (imputed)	N
1346	chr14	99750163	99750164	rs2496482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q32.2		rs2496482-T	0.4161	9E-17		0.0121	[0.0092-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1346	chr14	99750163	99750164	rs2496482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.2	Intergenic	rs2496482-T	0.4161	1E-20	(MTAG)	0.0126	[0.01-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1346	chr14	99782936	99782937	rs80158569	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Proximal colorectal cancer	15,706 European ancestry cases, 64,159 European ancestry controls	NA	14q32.2	BCL11B	rs80158569-A	0.075	9E-11		1.18	[1.12-1.24]	Affymetrix, Illumina [11437803] (imputed)	N
1346	chr14	99789900	99789906	rs57001569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q32.2		rs57001569-T	NR	5E-16		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1346	chr14	99793448	99793449	rs10145277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q32.2	CTD-2200A16.1	rs10145277-A	0.626573	7E-10		0.014112104	[0.0096-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1346	chr14	99793448	99793449	rs10145277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q32.2	CTD-2200A16.1	rs10145277-A	0.626604	6E-10		0.014176351	[0.0097-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1346	chr14	99793448	99793449	rs10145277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs10145277-A	0.617594	3E-14				Affymetrix, Illumina [23472807] (imputed)	N
1346	chr14	99793448	99793449	rs10145277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q32.2	NR	rs10145277-A	0.624665	3E-14		0.014861	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1346	chr14	99810426	99810427	rs1257310	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	14q32.2	SETD3, CCNK	rs1257310-?	NR	2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1346	chr14	99810426	99810427	rs1257310	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	14q32.2	SETD3, CCNK	rs1257310-?		5E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1346	chr14	99876521	99876522	rs148151659	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	14q32.2	SETD3	rs148151659-C	0.9999	2E-7		0.9283	[0.58-1.28] unit increase	Affymetrix, Illumina [at least 228985]	N
1346	chr14	99876521	99876522	rs148151659	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	14q32.2	SETD3	rs148151659-C	0.9999	2E-7		0.9768	[0.61-1.35] unit increase	Affymetrix, Illumina [at least 228985]	N
1346	chr14	99876521	99876522	rs148151659	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	14q32.2	SETD3	rs148151659-C	0.9999	9E-6		0.6329	[0.35-0.91] unit increase	Affymetrix, Illumina [at least 228985]	N
1346	chr14	99876521	99876522	rs148151659	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	14q32.2	SETD3	rs148151659-C	0.9999	9E-6		0.6594	[0.37-0.95] unit increase	Affymetrix, Illumina [at least 228985]	N
1348	chr14	100037017	100037018	rs2400749	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	14q32.2	CCDC85C	rs2400749-?		2E-6		1.3888888	[NR]	Illumina [803323]	N
1348	chr14	100086052	100086053	rs118022189	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	14q32.2	CCDC85C, HHIPL1	rs118022189-G	0.919459301	4E-6		1.1760969	[1.1-1.26]	Illumina [10439017] (imputed)	N
1348	chr14	100111051	100111052	rs4905875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.2		rs4905875-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1348	chr14	100111051	100111052	rs4905875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.2		rs4905875-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1348	chr14	100111564	100111565	rs12893887	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	14q32.2	HHIPL1	rs12893887-?	NR	2E-22		0.0600601	[0.048-0.072] unit decrease	Illumina [4804024] (imputed)	N
1348	chr14	100111564	100111565	rs12893887	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	14q32.2	HHIPL1	rs12893887-?	NR	6E-9		0.061026	[0.04-0.082] unit decrease	Illumina [19707525] (imputed)	N
1348	chr14	100111671	100111672	rs759098931	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	14q32.2	HHIPL1	rs759098931-?	NR	2E-6		0.315729	[0.18-0.45] unit increase	Illumina [19707525] (imputed)	N
1348	chr14	100111954	100111955	rs10149871	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.2	HHIPL1	rs10149871-T	0.3973	5E-10		0.2127	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1348	chr14	100114077	100114078	rs9788497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	14q32.2		rs9788497-A	NR	3E-14		0.0785	[0.058-0.099] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1348	chr14	100114077	100114078	rs9788497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	14q32.2		rs9788497-A	0.401750496	3E-11		0.095533445	[0.067-0.124] unit decrease	Illumina [13427135] (imputed)	N
1348	chr14	100124054	100124055	rs12897285	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	14q32.2	HHIPL1	rs12897285-T	0.830532	3E-9		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1348	chr14	100133249	100133250	rs17562391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.2		rs17562391-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1348	chr14	100133941	100133942	rs2895811	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	14q32.2	HHIPL1, MIR5698	rs2895811-T	0.5825	1E-14		0.0442	[0.033-0.055] unit decrease	NR [8041861] (imputed)	N
1348	chr14	100133941	100133942	rs2895811	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	14q32.2	HHIPL1	rs2895811-C	0.43	1E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1348	chr14	100135305	100135306	rs12436072	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	14q32.2	HHIPL1	rs12436072-A	0.39	5E-8		1.04	[1.03-1.06]	Illumina [5167567] (imputed)	N
1348	chr14	100136362	100136363	rs1952425	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	14q32.2	HHIPL1	rs1952425-A	0.1171	4E-6	(SBP)	0.00201	NR unit increase	Affymetrix [305158]	N
1349	chr14	100140369	100140370	rs11160538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q32.2		rs11160538-T	NR	4E-15		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1349	chr14	100141688	100141689	rs7158073	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.2	HHIPL1	rs7158073-T	0.453	2E-14		0.1877	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1349	chr14	100145709	100145710	rs10139550	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	14q32.2	HHIPL1	rs10139550-G	0.421	2E-9		1.05	[1.04-1.07]	Affymetrix [9149595] (imputed)	N
1349	chr14	100145709	100145710	rs10139550	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	14q32.2	HHIPL1	rs10139550-G	0.41	7E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [8600000] (imputed)	N
1349	chr14	100145709	100145710	rs10139550	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	14q32.2	HHIPL1	rs10139550-G	0.423033	1E-8		1.06	[1.04- 1.08]	Affymetrix, Illumina [8600000] (imputed)	N
1349	chr14	100148960	100148961	rs8003602	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Coronary atherosclerosis (time to event)	19,079 British ancestry cases, 263,792 British ancestry controls	NA	14q32.2	HHIPL1, CYP46A1	rs8003602-?	NR	6E-8				NR [~ 24000000] (imputed)	N
1349	chr14	100148960	100148961	rs8003602	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	14q32.2	CYP46A1, HHIPL1, MIR5698	rs8003602-T	0.2681	3E-16		0.0539	[0.041-0.067] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1349	chr14	100148960	100148961	rs8003602	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q32.2	CYP46A1, HHIPL1, MIR5698	rs8003602-T	0.269	5E-16		0.061	[0.045-0.077] unit decrease	Affymetrix [7947838] (imputed)	N
1349	chr14	100166227	100166228	rs3742377	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	14q32.2	CCDC85C, CCNK, CYP46A1, EML1, HHIPL1, MIR5698, SETD3	rs3742377-?	NR	1E-7				Illumina [9143600] (imputed)	N
1349	chr14	100182686	100182687	rs3752958	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	14q32.2		rs3752958-?	NR	1E-8		0.0702	[0.042-0.098] unit increase	NR [NR] (imputed)	N
1349	chr14	100223303	100223304	rs8014181	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.2	NR	rs8014181-?	NR	2E-8	(right inferior lateral ventricle)			NR [9227495] (imputed)	N
1349	chr14	100225143	100225144	rs1475130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	14q32.2		rs1475130-C	NR	2E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1349	chr14	100225143	100225144	rs1475130	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q32.2	CYP46A1, EML1	rs1475130-T		3E-8		0.215	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1349	chr14	100225143	100225144	rs1475130	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	14q32.2	CYP46A1, EML1	rs1475130-T		2E-6	(EA)	0.202	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1349	chr14	100225143	100225144	rs1475130	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	14q32.2	CYP46A1, EML1	rs1475130-T		7E-10		0.168	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1349	chr14	100233352	100233353	rs11160546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.2		rs11160546-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1349	chr14	100236868	100236869	rs61985998	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.2	EML1	rs61985998-T	0.4975	2E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix [18391927] (imputed)	N
1349	chr14	100237466	100237467	rs117486348	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	14q32.2	EML1	rs117486348-C	NR	3E-6	(adjusted for total body fat)	0.197	[0.11-0.28] unit increase	Illumina [8511049] (imputed)	N
1349	chr14	100249690	100249691	rs35426224	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	14q32.2	EML1	rs35426224-G	0.9255	1E-6	(EA)			Illumina [NR] (imputed)	N
1349	chr14	100269886	100269887	rs10136225	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	14q32.2		rs10136225-?	NR	5E-11				NR [9705931] (imputed)	N
1350	chr14	100283855	100283856	rs35522344	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.2		rs35522344-T	0.4	8E-49		14.68	z score increase	Affymetrix [9061022] (imputed)	N
1350	chr14	100283855	100283856	rs35522344	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.2		rs35522344-T	0.4	3E-28		11.04	z score increase	Affymetrix [9061022] (imputed)	N
1350	chr14	100283855	100283856	rs35522344	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.2	NR	rs35522344-T	0.3841	1E-17				NR [9056863] (imputed)	N
1350	chr14	100283855	100283856	rs35522344	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	14q32.2	HINT1, LYRM7, CDC42SE2, RAPGEF6, CTC-432M15.3, FNIP1, ACSL6, IL3, CSF2, P4HA2, PDLIM4, SLC22A4, SLC22A5, C5orf56	rs35522344-?		2E-8				NR [7428630] (imputed)	N
1350	chr14	100285179	100285180	rs4905899	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q32.2	SMARCAD1	rs4905899-?		3E-12				NR [7428630] (imputed)	N
1350	chr14	100350016	100350017	rs3783324	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	14q32.2		rs3783324-?	NR	3E-13				NR [9705931] (imputed)	N
1350	chr14	100352374	100352375	rs746698	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.2		rs746698-T	0.15	2E-52		15.24	z score increase	Affymetrix [9061022] (imputed)	N
1350	chr14	100352374	100352375	rs746698	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	14q32.2	TANK, PSMD14, TBR1	rs746698-?		1E-8				NR [7428630] (imputed)	N
1350	chr14	100352374	100352375	rs746698	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.2	EML1	rs746698-?		1E-20				NR [7428630] (imputed)	N
1350	chr14	100359293	100359294	rs10131519	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q32.2	EML1	rs10131519-T	0.801	4E-8		0.043	[0.027-0.059] unit decrease	Affymetrix [7947838] (imputed)	N
1350	chr14	100361885	100361886	rs1998385	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.2	NR	rs1998385-T	0.1746	1E-17				NR [9056863] (imputed)	N
1350	chr14	100363335	100363336	rs17652784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.2		rs17652784-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1351	chr14	100516840	100516841	rs34804741	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	14q32.2		rs34804741-C	NR	7E-6	(GLM)	0.5383	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1351	chr14	100526654	100526655	rs11621315	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.2	EVL	rs11621315-T	0.7125	3E-7	(EVL, 11656_110_3)	0.13991469	[0.086-0.193] unit increase	Illumina [> 1000000] (imputed)	N
1352	chr14	100581635	100581636	rs11160570	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	14q32.2	EVL, DEGS2	rs11160570-T		6E-13		6.673	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1352	chr14	100583348	100583349	rs7158754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.2		rs7158754-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1352	chr14	100599436	100599437	rs941898	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	14q32.2	EVL	rs941898-G	0.25	3E-7				Affymetrix, Illumina [14227402] (imputed)	N
1352	chr14	100599436	100599437	rs941898	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	14q32.2	EVL	rs941898-G	0.25	2E-6	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1352	chr14	100600802	100600803	rs10148930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.2		rs10148930-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1352	chr14	100611948	100611949	rs7147568	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	14q32.2	DEGS2	rs7147568-C	NR	3E-8		0.0378	[0.024-0.051] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1352	chr14	100620012	100620013	rs35257667	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	14q32.2	NR	rs35257667-?		3E-8	(MB)	0.2216	[NR] unit increase	Illumina [NR]	N
1352	chr14	100625901	100625902	rs7157599	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	14q32.2	DEGS2	rs7157599-C	NR	7E-9		0.0423	[0.028-0.057] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1352	chr14	100625901	100625902	rs7157599	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	14q32.2	DEGS2	rs7157599-C	0.2892	1E-8		0.0408	[0.027-0.055] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1352	chr14	100625901	100625902	rs7157599	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	14q32.2	DEGS2	rs7157599-?	0.31	1E-7	(Dominant)	1.13	[1.08-1.19]	Affymetrix [319222]	N
1352	chr14	100635221	100635222	rs55989340	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	14q32.2	NR	rs55989340-A	0.7389	8E-9		5.761	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1352	chr14	100639670	100639671	rs1957412	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	14q32.2	DEGS2	rs1957412-C	0.1399	2E-6		0.0429	[0.025-0.061] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1352	chr14	100642759	100642760	rs12891581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.2		rs12891581-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1352	chr14	100653847	100653848	rs8007562	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	14q32.2	NR	rs8007562-?	NR	6E-8		4.364	NR	Illumina [802276]	N
1352	chr14	100662329	100662330	rs2757529	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Parachlamydiales abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.2		rs2757529-C	0.435964	3E-8		0.0214165	[0.014-0.029] unit decrease	Illumina [7980478] (imputed)	N
1353	chr14	100684191	100684192	rs2766692	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	14q32.2	intergenic	rs2766692-G	0.691	2E-6		0.11	[NR] unit decrease	Illumina [634583]	N
1353	chr14	100691177	100691178	rs756055	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	14q32.2	NR	rs756055-C	NR	3E-8	(Recessive, Mixture cure model)	13.39	[5.37-33.43]	Illumina [810622]	N
1353	chr14	100701979	100701980	rs141516158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.2		rs141516158-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1353	chr14	100730919	100730920	rs7153665	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	14q32.2	NR	rs7153665-A	NR	3E-8	(Recessive, Mixture cure model)	13.39	[5.37-33.44]	Illumina [810622]	N
1353	chr14	100742657	100742658	rs28470843	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	14q32.2	YY1	rs28470843-T	0.619	2E-10		0.348	[0.24-0.46] unit increase	Affymetrix [NR] (imputed)	N
1353	chr14	100742657	100742658	rs28470843	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	14q32.2	YY1	rs28470843-T	0.622	2E-6		0.0011	[0.00051-0.00169] unit increase	Affymetrix [NR] (imputed)	N
1353	chr14	100742657	100742658	rs28470843	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q32.2	YY1	rs28470843-T	0.596	1E-13		0.1323	[0.097-0.167] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1353	chr14	100748843	100748844	rs9291	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.2	NR	rs9291-?	NR	5E-10				Affymetrix [NR]	N
1353	chr14	100752643	100752644	rs61993680	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	14q32.2	SLC25A29	rs61993680-A	0.6082	1E-14		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1353	chr14	100752643	100752644	rs61993680	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	14q32.2	SLC25A29	rs61993680-A	0.6477	9E-16		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1353	chr14	100765822	100765823	rs61993685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	14q32.2		rs61993685-C	NR	3E-8		0.0239	[0.015-0.032] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1353	chr14	100765822	100765823	rs61993685	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	14q32.2	SLC25A29	rs61993685-T	0.923588	4E-10		0.0234892	[0.016-0.031] unit increase	Affymetrix [NR] (imputed)	N
1353	chr14	100765822	100765823	rs61993685	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q32.2	SLC25A29	rs61993685-T	0.923551	3E-8		0.0198954	[0.013-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1353	chr14	100771532	100771541	rs376081938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q32.2		rs376081938-T	NR	4E-16		0.0137	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1353	chr14	100793430	100793431	rs1535464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	14q32.2		rs1535464-A	NR	2E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1353	chr14	100793430	100793431	rs1535464	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	14q32.2	NR	rs1535464-A	0.1013	4E-9	(East Asian)	0.6101	[0.41-0.81] unit decrease	Illumina [6200000] (imputed)	N
1353	chr14	100793430	100793431	rs1535464	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	14q32.2	NR	rs1535464-A	0.1013	4E-6	(East Asian)	0.322	[0.19-0.46] unit decrease	Illumina [6200000] (imputed)	N
1353	chr14	100793430	100793431	rs1535464	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	14q32.2	NR	rs1535464-A	0.1013	7E-8	(East Asian)	0.3931	[0.25-0.54] unit decrease	Illumina [6200000] (imputed)	N
1353	chr14	100793430	100793431	rs1535464	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	14q32.2	NR	rs1535464-A	0.1013	5E-6	(East Asian)	0.2982	[0.17-0.43] unit decrease	Illumina [6200000] (imputed)	N
1353	chr14	100794158	100794159	rs34184867	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.2	NR	rs34184867-C	0.504571	5E-16		0.00968074	[0.0072-0.0121] unit increase	Affymetrix [16585854] (imputed)	N
1353	chr14	100794158	100794159	rs34184867	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.2	NR	rs34184867-C	0.504571	2E-9		0.00818032	[0.0054-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1354	chr14	100794817	100794818	rs7147511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	14q32.2	NR	rs7147511-T	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1354	chr14	100795138	100795139	rs35007880	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	14q32.2		rs35007880-G	0.486414	2E-15		0.0331051	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1354	chr14	100795138	100795139	rs35007880	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q32.2	SLC25A47	rs35007880-G	0.485962	6E-14		0.0149106	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1354	chr14	100797199	100797200	rs7143025	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WARS	5,362 Icelandic ancestry individuals	NA	14q32.2		rs7143025-A	0.2456	8E-36		0.272792	[0.23-0.32] unit decrease	Illumina [7506463] (imputed)	N
1354	chr14	100797254	100797255	rs7143218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.2	NR	rs7143218-C	0.269131	5E-14		0.0246549	[0.018-0.031] unit increase	Affymetrix [16577313] (imputed)	N
1354	chr14	100798141	100798145	rs33952550	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	14q32.2	SLC25A47	rs33952550-C	0.7321	9E-9		0.009	[0.0057-0.0123] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1354	chr14	100801720	100801720	rs575471369	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	14q32.2		rs575471369-A,rs575471369-A	0.51306	9E-9		0.0229171	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1354	chr14	100801720	100801720	rs575471369	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	14q32.2		rs575471369-A,rs575471369-A	0.51306	9E-9		0.0229171	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1354	chr14	100805582	100805583	rs11629457	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.2	NR	rs11629457-T	0.264535	1E-8		0.00808494	[0.0052-0.0109] unit increase	Affymetrix [16578495] (imputed)	N
1354	chr14	100808725	100808726	rs149903755	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (global efficiency)	57 European ancestry individuals	NA	14q32.2	NR	rs149903755-A	NR	2E-6		4.77	z score decrease	NR [9015039] (imputed)	N
1354	chr14	100813076	100813077	rs941923	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.2	WARS	rs941923-C	0.76578125	7E-18	(WARS, 9870_17_3)	0.25511912	[0.2-0.31] unit increase	Illumina [> 1000000] (imputed)	N
1354	chr14	100825669	100825670	rs55869502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q32.2		rs55869502-T	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1354	chr14	100830258	100830259	rs7150701	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.2	NR	rs7150701-?	NR	4E-37				Affymetrix [NR]	N
1354	chr14	100830817	100830818	rs12888855	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	14q32.2	WARS	rs12888855-A	0.213	6E-12		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1354	chr14	100831607	100831607	rs773816354	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.2	NR	rs773816354-TAACAGGAGTTAAAAGTGTCG	0.511241	4E-34		0.00969981	[0.008-0.0114] unit increase	Affymetrix [16582909] (imputed)	N
1354	chr14	100831607	100831607	rs773816354	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q32.2	NR	rs773816354-TAACAGGAGTTAAAAGTGTCG	0.511054	8E-25		0.011388	[0.0091-0.0137] unit increase	Affymetrix [16582621] (imputed)	N
1354	chr14	100831607	100831607	rs773816354	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.2	NR	rs773816354-TAACAGGAGTTAAAAGTGTCG	0.511241	4E-23		0.00899429	[0.0071-0.0108] unit increase	Affymetrix [16582965] (imputed)	N
1354	chr14	100831607	100831607	rs773816354	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q32.2	NR	rs773816354-TAACAGGAGTTAAAAGTGTCG	0.511054	7E-23		0.0115634	[0.0091-0.014] unit increase	Affymetrix [16582614] (imputed)	N
1354	chr14	100839260	100839261	rs3783347	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	14q32.2	WARS	rs3783347-G	0.772265	4E-6		0.01649	[0.0095-0.0235] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1354	chr14	100839260	100839261	rs3783347	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	14q32.2	WARS	rs3783347-G	0.772265	2E-6		0.017814	[0.01-0.025] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1354	chr14	100839260	100839261	rs3783347	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	14q32.2	WARS	rs3783347-G	0.772265	2E-11		0.016837	[0.012-0.022] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1354	chr14	100842376	100842377	rs17554326	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	14q32.2	NR	rs17554326-A	0.8901	4E-8	(East Asian)	0.3838	[0.25-0.52] unit increase	Illumina [6200000] (imputed)	N
1354	chr14	100846990	100846991	rs12894936	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	14q32.2	WDR25	rs12894936-?	NR	1E-14		0.037	[0.046-0.028] unit decrease	Illumina [12039492]	N
1354	chr14	100882404	100882405	rs10144321	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	14q32.2	DLK1, WDR25	rs10144321-A	0.75	9E-15		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1354	chr14	100920415	100920416	rs78352137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.2		rs78352137-?	NR	5E-30				NR [~ 8900000] (imputed)	N
1354	chr14	100920415	100920416	rs78352137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.2		rs78352137-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1355	chr14	100985576	100985577	rs7492565	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	14q32.2	WDR25	rs7492565-G	NR	9E-10		0.00784751	[0.0053-0.0104] unit increase	Affymetrix [10061374] (imputed)	N
1355	chr14	101016823	101016824	rs11845599	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	14q32.2	BEGAIN	rs11845599-G	0.3647	5E-13		1.0277789		Affymetrix [11880941] (imputed)	N
1355	chr14	101021217	101021218	rs12432176	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	14q32.2		rs12432176-A	0.3781	1E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1355	chr14	101026147	101026148	rs10148448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	14q32.2		rs10148448-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1355	chr14	101032216	101032217	rs6575793	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	14q32.2	BEGAIN	rs6575793-C	0.42	1E-8		2.3	[1.52-3.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1356	chr14	101125069	101125070	rs755837	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	14q32.2	NA	rs755837-G	0.1758	3E-8	(Female)	1.0559661	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1356	chr14	101137383	101137384	rs7144375	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.2	NR	rs7144375-C	0.118	3E-37	(Semenogelin-2, SEMG2.6373.54.3)	0.49	[0.41-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
1356	chr14	101141543	101141544	rs2295659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG2	5,366 Icelandic ancestry individuals	NA	14q32.2		rs2295659-T	0.1323	3E-36		0.342835	[0.29-0.4] unit decrease	Illumina [7506463] (imputed)	N
1356	chr14	101141543	101141544	rs2295659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLK1	5,366 Icelandic ancestry individuals	NA	14q32.2		rs2295659-T	0.1323	3E-35		0.336022	[0.28-0.39] unit decrease	Illumina [7506463] (imputed)	N
1356	chr14	101141725	101141726	rs735241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q32.2		rs735241-A	NR	3E-12		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1356	chr14	101142889	101142890	rs730570	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	14q32.2	DLK1	rs730570-A	0.197	7E-10		1.28	NR	Illumina [at least 870261] (imputed)	N
1356	chr14	101142889	101142890	rs730570	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	14q32.2	DLK1	rs730570-A	0.197	3E-8		1.253	NR	Illumina [at least 870261] (imputed)	N
1356	chr14	101142889	101142890	rs730570	21573907	Parra EJ	2011-05-15	Diabetologia	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	European ancestry individuals	14q32.2	C14orf70	rs730570-G	NR	8E-6		1.14	[1.08-1.21]	Affymetrix [315658]	N
1356	chr14	101144595	101144596	rs12147845	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.2	DLK1	rs12147845-C	0.88381	3E-10		0.0135688	[0.0094-0.0178] unit decrease	Affymetrix [12370749]	N
1356	chr14	101144595	101144596	rs12147845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.2	NR	rs12147845-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1356	chr14	101144595	101144596	rs12147845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.2		rs12147845-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1356	chr14	101144595	101144596	rs12147845	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.2	NA	rs12147845-T	0.1115	5E-12		0.0187	[0.013-0.024] unit increase	NR [~ 27400000] (imputed)	N
1356	chr14	101146412	101146413	rs12881629	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	14q32.2	NR	rs12881629-G	NR	3E-9		0.0265	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1356	chr14	101154071	101154072	rs4905994	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	14q32.2	NR	rs4905994-T	NR	7E-6	(EA)	0.02871	(-0.04119--0.01623) mg/dl decrease	Illumina [up to 509150]	N
1356	chr14	101154071	101154072	rs4905994	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	14q32.2	NR	rs4905994-T	NR	4E-6		0.0234	[NR] mg/dl decrease	Illumina [up to 509150]	N
1356	chr14	101156145	101156155	rs200197449	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	14q32.2	NR	rs200197449-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.44	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1356	chr14	101159415	101159416	rs7149242	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	14q32.2	RP11-566J3.2	rs7149242-T	0.281233	4E-8		0.03672875	[0.024-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
1356	chr14	101159415	101159416	rs7149242	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	14q32.2	C14orf70, DLK1	rs7149242-G	NR	3E-8		2.142	[1.39-2.9] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1356	chr14	101161854	101161855	rs28473022	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q32.2	NR	rs28473022-A	0.0506	1E-9		0.03446812	[0.023-0.046] unit increase	Affymetrix [10549349] (imputed)	N
1356	chr14	101167631	101167632	rs17099614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q32.2		rs17099614-G	NR	6E-17		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1356	chr14	101167731	101167732	rs56011271	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	14q32.2	Intergenic	rs56011271-T	0.9075	6E-6		0.833	[0.47-1.19] unit increase	Illumina [9520174] (imputed)	N
1356	chr14	101168738	101168739	rs56349439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q32.2		rs56349439-A	NR	3E-14		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1356	chr14	101170539	101170540	rs10146962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q32.2		rs10146962-C	0.335362	4E-11		0.0154882325	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101170539	101170540	rs10146962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs10146962-C	0.436149	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
1356	chr14	101170539	101170540	rs10146962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q32.2	NR	rs10146962-C	0.338281	6E-15		0.015367	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1356	chr14	101170539	101170540	rs10146962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs10146962-C	0.402639	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1356	chr14	101170539	101170540	rs10146962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q32.2	NR	rs10146962-C	0.337467	5E-13		0.01479	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1356	chr14	101171479	101171480	rs7156824	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	14q32.2		rs7156824-C	0.874	1E-16				Affymetrix [10369434] (imputed)	N
1356	chr14	101172442	101172443	rs9324022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.2		rs9324022-C	0.210086	2E-17		0.027883587	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101172442	101172443	rs9324022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.2	intergenic	rs9324022-C	0.2105	3E-38		0.05957088	[0.051-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1356	chr14	101172541	101172542	rs9635298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q32.2		rs9635298-T	0.302184	1E-15		0.028824	[0.022-0.036] unit decrease	Illumina [13478928] (imputed)	N
1356	chr14	101172541	101172542	rs9635298	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q32.2	LINC00523, DLK1	rs9635298-?	NR	2E-10		0.02927	[0.02-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1356	chr14	101173123	101173124	rs17099623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.2		rs17099623-C	0.207647	4E-28		0.034536447	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101173123	101173124	rs17099623	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.2	NR	rs17099623-C	0.212	7E-11		0.00860089	[0.006-0.0112] unit increase	NR [9732723] (imputed)	N
1356	chr14	101173200	101173201	rs72698716	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	14q32.2		rs72698716-T	NR	1E-16		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1356	chr14	101173296	101173297	rs10144381	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.2	NR	rs10144381-T	0.37265625	6E-62	(SEMG2, 6373_54_3)	0.40629548	[0.36-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1356	chr14	101173296	101173297	rs10144381	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	14q32.2	NR	rs10144381-T	0.37265625	6E-58	(DLK1, 6496_60_3)	0.39199004	[0.35-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1356	chr14	101175755	101175763	rs147352336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q32.2	NR	rs147352336-C	0.191182	6E-11		0.018749962	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101175966	101175967	rs10873520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.2		rs10873520-A	NR	7E-69		0.04	[0.035-0.045] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1356	chr14	101176090	101176090	rs137952017	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	14q32.2	DLK1	rs137952017-C	0.85	4E-15		0.003	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1356	chr14	101176211	101176212	rs12881545	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	14q32.2		rs12881545-G	0.326561	3E-7		0.011	[0.0071-0.0149] unit decrease	NR [7250403] (imputed)	N
1356	chr14	101176334	101176335	rs12881760	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG2	5,366 Icelandic ancestry individuals	NA	14q32.2		rs12881760-G	0.3792	4E-115		0.420721	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
1356	chr14	101176334	101176335	rs12881760	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLK1	5,366 Icelandic ancestry individuals	NA	14q32.2		rs12881760-G	0.3792	3E-108		0.40705	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
1356	chr14	101176334	101176335	rs12881760	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	14q32.2	NR	rs12881760-C	0.649	3E-8		0.00849798	[0.0055-0.0115] unit increase	NR [9732723] (imputed)	N
1356	chr14	101176334	101176335	rs12881760	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.2	DLK1	rs12881760-C	0.676	4E-101	(Protein delta homolog 1, DLK1.6496.60.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
1356	chr14	101176334	101176335	rs12881760	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.2	DLK1	rs12881760-C	0.676	2E-106	(Semenogelin-2, SEMG2.6373.54.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.2		rs1555405-A	0.248535	5E-71		0.052571632	[0.047-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.2		rs1555405-A	0.248535	5E-36		0.038010243	[0.032-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.2		rs1555405-A	0.248356	2E-23		0.0261	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.2		rs1555405-A	0.248369	7E-16		0.020647107	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.32917	6E-10				Affymetrix, Illumina [24332387] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.248732	8E-11		0.014108	[0.0099-0.0184] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.248867	5E-128		0.051785	[0.048-0.056] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs1555405-G	0.746094	3E-11				Affymetrix, Illumina [17210439] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q32.2	NR	rs1555405-G	0.751668	4E-12		0.015514	[0.011-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.316777	2E-27				Affymetrix, Illumina [24246363] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.248775	2E-29		0.023978	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q32.2	NR	rs1555405-A	0.248777	2E-18		0.019622	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.2		rs1555405-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.2	intergenic	rs1555405-A	0.2489	4E-55		0.06643256	[0.058-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1356	chr14	101176768	101176769	rs1555405	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q32.2	intergenic	rs1555405-A	0.2489	9E-33		0.05046488	[0.042-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1356	chr14	101178554	101178555	rs72698718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	14q32.2	NR	rs72698718-G	0.703717	5E-12		0.028203	[0.02-0.036] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1356	chr14	101178714	101178715	rs72698720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs72698720-G	0.167246	8E-132				Affymetrix, Illumina [24588908] (imputed)	N
1356	chr14	101178803	101178804	rs12893790	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q32.2	NR	rs12893790-G	0.815662	1E-9		0.0209852	[0.014-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1356	chr14	101180040	101180041	rs59488041	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	14q32.2	NR	rs59488041-A	0.1511	1E-17		0.032236	[0.025-0.04] unit decrease	Affymetrix [3505788] (imputed)	N
1356	chr14	101181188	101181189	rs72698721	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	14q32.2	LINC00523, DLK1	rs72698721-A	0.32	4E-33		0.055	NR unit increase	Illumina [9591901] (imputed)	N
1356	chr14	101181188	101181189	rs72698721	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	14q32.2	LINC00523, DLK1	rs72698721-G	0.87	1E-52		0.026	unit increase	NR [NR]	N
1356	chr14	101181780	101181781	rs4905998	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.2		rs4905998-A	0.32	2E-44				Affymetrix [10369434] (imputed)	N
1356	chr14	101181780	101181781	rs4905998	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q32.2	WDR25, BEGAIN, DLK1	rs4905998-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
1356	chr14	101181880	101181881	rs72698722	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	14q32.2	NR	rs72698722-T	0.192891	1E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix [23037915] (imputed)	N
1356	chr14	101181880	101181881	rs72698722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.2		rs72698722-T	0.188844	4E-15		0.022682102	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr14	101181880	101181881	rs72698722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.2		rs72698722-T	0.188557	4E-34		0.034860436	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101181880	101181881	rs72698722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.2		rs72698722-T	0.188578	2E-30		0.033054255	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101181880	101181881	rs72698722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.2	NR	rs72698722-T	0.213643	3E-16				Affymetrix, Illumina [20825802] (imputed)	N
1356	chr14	101182469	101182470	rs7141210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.2	NR	rs7141210-C	0.678738	1E-11		0.015967809	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101182469	101182470	rs7141210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.2		rs7141210-C	0.678543	3E-11		0.015980605	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1356	chr14	101182469	101182470	rs7141210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.2		rs7141210-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1356	chr14	101182469	101182470	rs7141210	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	14q32.2	DLK1	rs7141210-T	0.34	6E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1356	chr14	101185186	101185187	rs59228823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.2		rs59228823-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1356	chr14	101186640	101186641	rs11160601	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.2	NR	rs11160601-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1356	chr14	101186640	101186641	rs11160601	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q32.2	NR	rs11160601-?	NR	2E-9	(female)	0.25359	[0.17-0.34] unit increase	Affymetrix [7794483] (imputed)	N
1356	chr14	101186640	101186641	rs11160601	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	14q32.2	NR	rs11160601-?	NR	2E-7		0.1998	[0.12-0.28] unit increase	Affymetrix [7794483] (imputed)	N
1357	chr14	101188617	101188618	rs72698726	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	14q32.2	NR	rs72698726-?	NR	7E-6		0.05109	[0.029-0.073] unit decrease	Affymetrix [9658292] (imputed)	N
1357	chr14	101188730	101188731	rs7155375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q32.2		rs7155375-T	NR	1E-8		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1357	chr14	101193138	101193139	rs28362570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q32.2		rs28362570-T	0.0672	3E-16		0.033297	[0.025-0.041] unit decrease	Illumina [13479295] (imputed)	N
1357	chr14	101196268	101196269	rs117182230	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.2	DLK1	rs117182230-?	NR	1E-18		0.049768448	[0.039-0.061] unit decrease	Illumina [27896057] (imputed)	N
1357	chr14	101199021	101199022	rs3783350	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.2	DLK1	rs3783350-A	0.7967	5E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1357	chr14	101199021	101199022	rs3783350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.2		rs3783350-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1357	chr14	101200859	101200860	rs1058009	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	14q32.2	DLK1	rs1058009-A	0.447	6E-12		0.01		Illumina [243345]	N
1357	chr14	101201686	101201687	rs78420139	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q32.2	DLK1	rs78420139-G	0.944649	4E-8		0.0170415	[0.011-0.023] unit increase	Affymetrix [12370749]	N
1357	chr14	101204234	101204235	rs1555406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.2		rs1555406-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1357	chr14	101207925	101207926	rs7142156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	14q32.2	NR	rs7142156-G	NR	3E-16		0.0214	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1357	chr14	101224921	101224922	rs2400940	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Diastolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	14q32.2	DLK1	rs2400940-T	NR	4E-8	(EA)	2.5285	NR unit increase	Illumina [NR] (imputed)	N
1357	chr14	101234004	101234005	rs58540528	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMG2	5,366 Icelandic ancestry individuals	NA	14q32.2		rs58540528-A	0.2182	1E-83		0.424268	[0.38-0.47] unit decrease	Illumina [7506463] (imputed)	N
1357	chr14	101234004	101234005	rs58540528	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLK1	5,366 Icelandic ancestry individuals	NA	14q32.2		rs58540528-A	0.2182	3E-79		0.41175	[0.37-0.45] unit decrease	Illumina [7506463] (imputed)	N
1357	chr14	101251988	101251989	rs1884537	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	14q32.2	MEG3	rs1884537-C	NR	2E-6		0.134	[0.052-0.216] unit increase	Illumina [~ 2740000] (imputed)	N
1357	chr14	101255171	101255172	rs73347525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	14q32.2		rs73347525-G	0.225679841	4E-8		0.06569593	[0.042-0.089] unit decrease	Illumina [13429769] (imputed)	N
1357	chr14	101255171	101255172	rs73347525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	14q32.2		rs73347525-G	NR	2E-11		0.0536	[0.038-0.069] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1357	chr14	101255171	101255172	rs73347525	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q32.2	NR	rs73347525-G	0.1897	7E-9		0.0485	[0.032-0.065] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1357	chr14	101255171	101255172	rs73347525	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	14q32.2	DLK1, MEG3, miRNA	rs73347525-A	0.756	7E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1357	chr14	101257754	101257755	rs6575803	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	14q32.2	MIR2392, DLK1	rs6575803-C	0.895496	1E-12		0.031625	[0.023-0.04] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1357	chr14	101258583	101258584	rs112324411	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q32.2	NR	rs112324411-C	0.9377	1E-12		0.0729	[0.053-0.093] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1357	chr14	101280660	101280661	rs11622263	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q32.2	NR	rs11622263-?	NR	4E-6	(AA)	194.87	[185.78-203.96]	Illumina [905956]	N
1357	chr14	101306044	101306045	rs941576	19966805	Wallace C	2009-12-06	Nat Genet	The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,840 European ancestry cases, 2,670 European ancestry controls, 5,766 European ancestry familial triads	14q32.2	DIO3, DLK1, MEG3, RTL1	rs941576-A	0.57	1E-10		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1357	chr14	101306446	101306447	rs56994090	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	14q32.2	intergenic	rs56994090-T	0.59	1E-11		1.1363636		Illumina [135870]	N
1357	chr14	101310878	101310879	rs12587062	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	14q32.2	RTL1	rs12587062-G	NR	8E-6		0.102	[0.057-0.147] unit decrease	Illumina [NR] (imputed)	N
1357	chr14	101310878	101310879	rs12587062	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	14q32.2	RTL1	rs12587062-G	0.763	6E-6	(EA)	0.11	[0.063-0.157] unit decrease	Illumina [NR] (imputed)	N
1357	chr14	101318310	101318311	rs2295389	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.2	NR	rs2295389-G	0.3539	2E-6	(EA)	0.0345	[0.02-0.049] unit decrease	Illumina [~ 11800000] (imputed)	N
1358	chr14	101342492	101342493	rs35853323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mastopathy	2,541 European ancestry cases, 257,308 European ancestry controls, 575 East Asian ancestry cases, 82,186 East Asian ancestry controls	NA	14q32.2		rs35853323-A	NR	2E-8		0.2164	[0.14-0.29] unit increase	Affymetrix, Illumina [25793968] (imputed)	N
1358	chr14	101346313	101346314	rs67585357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.2		rs67585357-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1358	chr14	101353210	101353211	rs6575806	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.2		rs6575806-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1358	chr14	101365264	101365265	rs2180386	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	14q32.2	MEG8	rs2180386-A	0.38	7E-6		0.21	[NR] unit decrease	Illumina [223580]	N
1358	chr14	101373972	101373973	rs1950626	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	14q32.31	AL132709.5, MIR370, RTL1	rs1950626-G	0.79	3E-7	(Hispanic)	2.96	[1.96-4.48]	Affymetrix [at least 730985] (imputed)	N
1359	chr14	101464983	101464984	rs10132309	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	14q32.31		rs10132309-?	NR	2E-6		1.1308855	[1.07543115875773-1.18919924283748]	Illumina [up to 7827597] (imputed)	N
1359	chr14	101474869	101474870	rs10145110	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	14q32.31	SNORD114-31	rs10145110-?		1E-7				Illumina [859311]	N
1359	chr14	101492223	101492224	rs7141987	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x gastroesophageal reflux disease interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	14q32.31	SNORD114-31, LOC100130814	rs7141987-G	0.42	7E-7		1.77	[NR]	Illumina [993501]	N
1359	chr14	101509286	101509287	rs7147329	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	14q32.31	intergenic	rs7147329-G	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1359	chr14	101526180	101526181	rs41286572	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q32.31	Intergenic	rs41286572-?		4E-6		1.09	[1.05-1.13]	Illumina [7645193] (imputed)	N
1359	chr14	101526180	101526181	rs41286572	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	14q32.31	Intergenic	rs41286572-?		4E-6		2.19	[1.57-3.06]	Illumina [7645193] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q32.31		rs7161194-G	NR	6E-11		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.31	NR	rs7161194-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	14q32.31		rs7161194-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.31		rs7161194-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q32.31	NR	rs7161194-A	NR	1E-22		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1359	chr14	101529004	101529005	rs7161194	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.31	BEGAIN	rs7161194-?	NR	6E-6	(tauro deoxycholate)	0.28781176	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1359	chr14	101531853	101531854	rs61992671	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.31	AL117190.3	rs61992671-A	0.507904	6E-12		0.00988005	[0.0071-0.0127] unit increase	Affymetrix [12370749]	N
1359	chr14	101531853	101531854	rs61992671	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	14q32.31	NA	rs61992671-A	0.5063	1E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1359	chr14	101537856	101537857	rs3742406	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.31	DIO3	rs3742406-?	NR	2E-7	(threonine)	0.18659452	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1359	chr14	101539383	101539384	rs7147503	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.31	NR	rs7147503-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1359	chr14	101539383	101539384	rs7147503	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q32.31	NA	rs7147503-T	0.3479	2E-10		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1359	chr14	101539383	101539384	rs7147503	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		14q32.31	NR	rs7147503-C		5E-6		0.051	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1359	chr14	101539998	101539999	rs12431682	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.31	NA	rs12431682-T	0.3416	2E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
1359	chr14	101539998	101539999	rs12431682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q32.31		rs12431682-T	0.3699	2E-10		0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1359	chr14	101539998	101539999	rs12431682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.31	Intergenic	rs12431682-T	0.3699	6E-11	(MTAG)	0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1359	chr14	101542479	101542480	rs4906037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.31	Intergenic	rs4906037-T	0.3499	4E-10	(MTAG)	0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1360	chr14	101585001	101585002	rs4906048	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.31	NR	rs4906048-?	NR	4E-15				Affymetrix [NR]	N
1360	chr14	101590668	101590669	rs77819737	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.31	NR	rs77819737-A	0.0122	8E-9	(CSTA)	0.0272	NR unit increase	Illumina [1671387] (imputed)	N
1360	chr14	101598941	101598942	rs915364	26058915	Tin A	2015-05-29	BMC Genet	Genetic loci for serum magnesium among African-Americans and gene-environment interaction at MUC1 and TRPM6 in European-Americans: the Atherosclerosis Risk in Communities (ARIC) study.	Magnesium levels	2,737 African American individuals	942 African American individuals	14q32.31	MIR379	rs915364-A	0.57	2E-7		0.009	[NR] mmol/L increase	Affymetrix [14825944] (imputed)	N
1360	chr14	101641833	101641834	rs559148602	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	14q32.31		rs559148602-G	0.0013099	2E-6		0.44601	[0.26-0.63] unit increase	Affymetrix [15580782] (imputed)	N
1360	chr14	101679254	101679255	rs6575836	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	14q32.31	SNORD114-31	rs6575836-G	0.79	8E-6		4.0	[NR]	Affymetrix [up to 4467279] (imputed)	N
1360	chr14	101690044	101690045	rs8008758	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	14q32.31	LOC100128373, DIO3OS	rs8008758-A	0.25	3E-6	(AA)	0.39	[0.23-0.55] unit increase	Affymetrix [706791]	N
1360	chr14	101691296	101691297	rs17587049	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.31	DLK1	rs17587049-?	NR	3E-7	(gamma aminoisobutyric acid)	0.76709396	[0.47-1.06] unit increase	Affymetrix [at least 2500000] (imputed)	N
1360	chr14	101702380	101702381	rs8006867	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	14q32.31		rs8006867-A	0.2591	8E-6		1.29	[1.154-1.443]	Affymetrix [7975321] (imputed)	N
1360	chr14	101707648	101707649	rs58933977	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs58933977-T	0.849841	2E-11		0.08671	[0.062-0.112] increase	Affymetrix [11014269] (imputed)	N
1360	chr14	101710194	101710195	rs73343828	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	14q32.31	Intergenic	rs73343828-G	0.015	9E-6		2.2912	[1.28-3.3] unit increase	Illumina [9520174] (imputed)	N
1361	chr14	101720668	101720669	rs17587609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.31		rs17587609-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1362	chr14	101855011	101855012	rs72709517	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.31	NR	rs72709517-A	0.0782	9E-10		0.0122878	[0.0084-0.0162] unit decrease	NR [9732723] (imputed)	N
1362	chr14	101888861	101888862	rs12586334	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	14q32.31	PPP2R5C	rs12586334-?	NR	8E-6	(malate)	0.37161607	[0.21-0.54] unit increase	Affymetrix [at least 2500000] (imputed)	N
1362	chr14	101910777	101910778	rs8019453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	14q32.31		rs8019453-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1362	chr14	101910777	101910778	rs8019453	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q32.31	NR	rs8019453-T	0.149619	4E-14		0.0329045	[0.024-0.041] unit decrease	NR [19129689] (imputed)	N
1362	chr14	101915880	101915881	rs7145420	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (4 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	14q32.31		rs7145420-?	NR	8E-6				Illumina [1365315]	N
1362	chr14	101941671	101941672	rs10130044	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.31		rs10130044-T	0.18	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
1362	chr14	101969658	101969659	rs11625079	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBP9 abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.31		rs11625079-G	0.457204	4E-8		0.0263582	[0.017-0.036] unit decrease	Illumina [7980478] (imputed)	N
1363	chr14	101986817	101986818	rs78520559	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q32.31		rs78520559-A	NR	8E-6		3.596	[2.06-5.14] unit increase	Illumina [NR] (imputed)	N
1363	chr14	101995398	101995399	rs10134381	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900199385 sp900320755 abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.31		rs10134381-C	0.183767	3E-8		0.0410375	[0.026-0.056] unit decrease	Illumina [7980478] (imputed)	N
1363	chr14	101995398	101995399	rs10134381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.31	Intergenic	rs10134381-C	0.1574	2E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1363	chr14	101998442	101998443	rs11626434	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	14q32.31	DIO3OS	rs11626434-C	0.36	2E-16		0.053	[0.039-0.067] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1363	chr14	101998442	101998443	rs11626434	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	14q32.31	DIO3	rs11626434-G	0.6384000000000001	8E-10		0.1345	[0.092-0.177] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1363	chr14	102031751	102031752	rs6575858	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.31	Intergenic	rs6575858-C	0.611	3E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1363	chr14	102052774	102052775	rs2895917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.31	Intergenic	rs2895917-T	0.3432	2E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1363	chr14	102090921	102090922	rs1955614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.31		rs1955614-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1363	chr14	102095835	102095836	rs11621975	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	14q32.31	intergenic	rs11621975-?	NR	5E-6		2.31		Illumina [636555]	N
1363	chr14	102101625	102101626	rs10459463	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	14q32.31	NR	rs10459463-?	NR	7E-6	(AA)	0.287426	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1364	chr14	102191467	102191468	rs186567091	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q32.31		rs186567091-G	NR	8E-6		2.5143	[1.43-3.6] unit increase	Illumina [NR] (imputed)	N
1364	chr14	102209562	102209563	rs144029336	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	14q32.31	NR	rs144029336-G	NR	9E-6		0.4551	[0.25-0.66] SD units decrease	NR [10700000] (imputed)	N
1365	chr14	102259213	102259219	rs370731758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q32.31		rs370731758-A	NR	2E-9		0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1365	chr14	102287939	102287940	rs113996630	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.31	NR	rs113996630-C	0.03659	6E-9	(ASAH1)	0.01954	NR unit increase	Illumina [1671387] (imputed)	N
1365	chr14	102287984	102287985	rs80152381	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-495 abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.31		rs80152381-A	0.0665114	2E-8		0.29119	[0.19-0.39] unit decrease	Illumina [7980478] (imputed)	N
1365	chr14	102319885	102319886	rs1678030	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q32.31		rs1678030-A	NR	5E-7		1.7623	[1.09-2.43] unit increase	Illumina [NR] (imputed)	N
1365	chr14	102350551	102350552	rs3783364	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	14q32.31	PPP2R5C	rs3783364-G	0.04902	8E-6	(EA)			Illumina [4404269] (imputed)	N
1365	chr14	102360744	102360745	rs7142002	20663923	Anney R	2010-07-27	Hum Mol Genet	A genome-wide scan for common alleles affecting risk for autism.	Autism	1,230 European ancestry child cases from 1,217 families, 155 African American Asian or Latino child cases from 152 families, 1,880 controls	783 European ancestry child cases from 440 families, 303 child cases from 155 families, 1,965 European, African American and other ancestry controls	14q32.31	PPP2R5C	rs7142002-?	0.94	3E-6	(Spc)	1.56	[1.28-1.89]	Illumina [842348]	N
1366	chr14	102385456	102385457	rs3783370	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	14q32.31	PPP2R5C	rs3783370-?	NR	2E-6		3.8	[2.1-6.8]	Illumina [1057565]	N
1366	chr14	102414766	102414767	rs2448241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.31		rs2448241-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1366	chr14	102438009	102438010	rs143265607	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf226	5,365 Icelandic ancestry individuals	NA	14q32.31		rs143265607-T	0.016	3E-15		0.5894	[0.44-0.74] unit increase	Illumina [7506463] (imputed)	N
1366	chr14	102454932	102454933	rs4906172	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	14q32.31	NR	rs4906172-?	NR	3E-6		0.36	[0.21-0.51] years decrease	Illumina [315418]	N
1367	chr14	102551928	102551929	rs35155249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs35155249-G	NR	4E-9		0.0322	[0.021-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1367	chr14	102595470	102595472	rs141479881	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q32.31	NR	rs141479881-A	NR	2E-9		0.0255	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1367	chr14	102595624	102595625	rs1190596	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	14q32.31	NR	rs1190596-A	0.18	4E-6	(Nicotine use)			Illumina [527829]	N
1367	chr14	102601053	102601054	rs187521274	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.31		rs187521274-T	0.01123	2E-28		1.02123	[0.84-1.2] unit increase	Illumina [7506463] (imputed)	N
1367	chr14	102601053	102601054	rs187521274	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	14q32.31		rs187521274-T	0.01123	3E-20		0.845631	[0.67-1.03] unit increase	Illumina [7506463] (imputed)	N
1367	chr14	102614877	102614878	rs57236717	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	14q32.31	WDR20	rs57236717-C	0.8154	1E-11		0.03322261	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1368	chr14	102629467	102629468	rs146613487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VCY	5,365 Icelandic ancestry individuals	NA	14q32.31		rs146613487-T	0.016	9E-12		0.525168	[0.37-0.68] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102629467	102629468	rs146613487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GC	5,368 Icelandic ancestry individuals	NA	14q32.31		rs146613487-T	0.016	1E-19		0.701876	[0.55-0.85] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102629467	102629468	rs146613487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD84	5,367 Icelandic ancestry individuals	NA	14q32.31		rs146613487-T	0.016	2E-11		0.523559	[0.37-0.68] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102637574	102637575	rs1190569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.31	WDR20	rs1190569-T	0.779001	2E-10		0.01745764	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102637585	102637585	rs147764722	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	14q32.31		rs147764722-C	0.20588	4E-10		0.0318364	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1368	chr14	102637585	102637585	rs147764722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q32.31	WDR20	rs147764722-CCT	0.795035	2E-9		0.01693575	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102637585	102637585	rs147764722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q32.31	WDR20	rs147764722-CCT	0.795029	1E-10		0.018244267	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102637585	102637585	rs147764722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.31	WDR20	rs147764722-CCT	0.795018	2E-10		0.017889466	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102637585	102637585	rs147764722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.31	WDR20	rs147764722-CCT	0.795021	4E-11		0.0185656	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102659987	102659988	rs56386186	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	14q32.31	DYNC1H1, HSP90AA1, MOK, WDR20, ZNF839	rs56386186-?	NR	1E-11				Affymetrix [up to 7325140] (imputed)	N
1368	chr14	102669021	102669022	rs12883091	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	14q32.31	WDR20	rs12883091-A	NR	1E-9		0.0310194	[0.021-0.041] unit increase	Affymetrix [16832071] (imputed)	N
1368	chr14	102675349	102675350	rs6575900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	14q32.31		rs6575900-G	0.79594	2E-10		0.0325661	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1368	chr14	102676238	102676239	rs45622942	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.31		rs45622942-G	0.01574	4E-24		0.78942	[0.64-0.94] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102676238	102676239	rs45622942	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.31		rs45622942-G	0.01574	6E-27		0.8375	[0.68-0.99] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102676238	102676239	rs45622942	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.31		rs45622942-G	0.01574	3E-24		0.790994	[0.64-0.94] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102676238	102676239	rs45622942	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FBN3	5,360 Icelandic ancestry individuals	NA	14q32.31		rs45622942-G	0.01574	2E-11		0.507787	[0.36-0.66] unit increase	Illumina [7506463] (imputed)	N
1368	chr14	102686182	102686183	rs7154553	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	14q32.31	NR	rs7154553-A	0.8	1E-14		0.0176	[0.013-0.022] unit decrease	NR [NR]	N
1368	chr14	102691853	102691854	rs6575901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	14q32.31	MOK	rs6575901-C	0.204643	6E-29		0.030635891	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1368	chr14	102695562	102695563	rs3087686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.31	NR	rs3087686-A	0.784001	3E-39				Affymetrix, Illumina [22063850] (imputed)	N
1368	chr14	102695562	102695563	rs3087686	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q32.31	NR	rs3087686-A	0.794221	5E-42		0.031673	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1368	chr14	102695562	102695563	rs3087686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q32.31		rs3087686-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1368	chr14	102703046	102703047	rs55780831	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	14q32.31	MOK	rs55780831-?		3E-6				Illumina [4322238] (imputed)	N
1368	chr14	102718051	102718052	rs2274815	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	14q32.31		rs2274815-G	0.794942	3E-8		0.0276771	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1368	chr14	102740274	102740275	rs8022504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	14q32.31	NR	rs8022504-C	NR	2E-9		0.0254	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1368	chr14	102740274	102740275	rs8022504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	14q32.31	NR	rs8022504-C	NR	2E-9		0.0251	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1368	chr14	102740274	102740275	rs8022504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.31		rs8022504-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1368	chr14	102740493	102740494	rs71421258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.31	NR	rs71421258-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1369	chr14	102764819	102764820	rs2210315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	14q32.31		rs2210315-T	NR	2E-11		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1369	chr14	102771146	102771147	rs3818666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.31		rs3818666-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1369	chr14	102783507	102783508	rs4906190	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	14q32.31	ZNF839	rs4906190-?	NR	2E-8		0.02643	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1369	chr14	102785628	102785629	rs150789694	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	14q32.31	ZNF839	rs150789694-A	0.985	9E-6	(EA)	0.434	[0.24-0.63] unit increase	Illumina [NR] (imputed)	N
1369	chr14	102785800	102785801	rs72635188	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q32.31	NR	rs72635188-?	NR	1E-11		0.03275	[0.023-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1369	chr14	102795852	102795853	rs117823280	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (delayed memory) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	14q32.31		rs117823280-T	0.01	2E-9				NR [NR] (imputed)	N
1369	chr14	102795852	102795853	rs117823280	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (delayed memory)	9,567 European ancestry individuals	NA	14q32.31		rs117823280-T	0.01	3E-7		0.87	[0.54-1.2] unit increase	NR [NR] (imputed)	N
1369	chr14	102803562	102803563	rs28561649	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	14q32.31	NR	rs28561649-?	NR	8E-9				Illumina [7760689] (imputed)	N
1369	chr14	102845866	102845867	rs150571175	24957906	Kuiper JJ	2014-06-22	Hum Mol Genet	A genome-wide association study identifies a functional ERAP2 haplotype associated with birdshot chorioretinopathy.	Birdshot chorioretinopathy	117 European ancestry cases, 693 European ancestry  controls	30 European ancestry cases, 2,793 European ancestry controls	14q32.31	TECPR2	rs150571175-A	0.017	2E-7		4.6	[2.60-8.30]	Illumina [9932851] (imputed)	N
1369	chr14	102879543	102879544	rs59741319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs59741319-T	NR	2E-9		0.0315	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1369	chr14	102879543	102879544	rs59741319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs59741319-T	NR	5E-10		0.0328	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1370	chr14	102896672	102896673	rs1005776	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.31	ZNF839, CINP, TECPR2, AL137229.1	rs1005776-A	0.2983952	3E-17	(EA, Inosine-5'-monophosphate dehydrogenase 2)	0.3987	[0.31-0.49] unit increase	Affymetrix [509946]	N
1370	chr14	102898857	102898858	rs1190543	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.31	TECPR2	rs1190543-A	0.2278	8E-14		0.0169	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1370	chr14	102904178	102904179	rs1190545	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q32.31	TECPR2	rs1190545-C	0.7364	5E-18		0.03594511	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1370	chr14	102911906	102911907	rs1190552	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	14q32.31	ANKRD9, TECPR2, RNU6-244P	rs1190552-A	0.2273642	2E-37	(EA, Inosine-5'-monophosphate dehydrogenase 1)	0.6535	[0.56-0.75] unit increase	Affymetrix [509946]	N
1370	chr14	102946561	102946561	rs71119705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q32.31		rs71119705-TA	NR	5E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1370	chr14	102949331	102949332	rs8011181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q32.31	NR	rs8011181-C	0.651583	8E-11		0.013469	[0.0094-0.0175] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1370	chr14	102969642	102969643	rs10141666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	14q32.31		rs10141666-C	0.690231	4E-10		0.0246665	[0.017-0.032] unit increase	Illumina [13476266] (imputed)	N
1370	chr14	102972169	102972170	rs942023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q32.31		rs942023-C	NR	4E-36		0.0269	[0.023-0.031] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1370	chr14	102974998	102974999	rs2273905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q32.31		rs2273905-C	NR	8E-10		0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1370	chr14	102974998	102974999	rs2273905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q32.31		rs2273905-C	NR	6E-31		0.0248	[0.021-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1370	chr14	102974998	102974999	rs2273905	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	14q32.31	ANKRD9	rs2273905-T	0.355	4E-11		0.61	[0.43-0.79] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1370	chr14	102975265	102975266	rs8007356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.31		rs8007356-?	NR	4E-29				NR [~ 8900000] (imputed)	N
1370	chr14	102975551	102975552	rs3742445	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	14q32.31	NR	rs3742445-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1370	chr14	102977875	102977876	rs10150698	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.31	ANKRD9, MIR4309	rs10150698-?	NR	2E-11		0.019714337	[0.014-0.025] unit decrease	Illumina [27896057] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	14q32.31		rs1998422-C	0.77188	2E-9		0.0265595	[0.018-0.035] unit increase	Illumina [13476299] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.31	NR	rs1998422-C	0.676652	9E-47				Affymetrix, Illumina [24246363] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.31	NR	rs1998422-C	0.64957	2E-43		0.026988	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.31	NR	rs1998422-C	0.67367	9E-50				Affymetrix, Illumina [20825802] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q32.31	NR	rs1998422-C	0.644035	4E-46		0.028765	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1370	chr14	102980992	102980993	rs1998422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.31		rs1998422-?	NR	4E-42				NR [~ 8900000] (imputed)	N
1370	chr14	102982486	102982486	rs35490268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.31		rs35490268-TC	0.264462	1E-13		0.019716615	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr14	102984273	102984274	rs3936840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.31	intergenic	rs3936840-C	0.3425	4E-12		0.02698156	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1370	chr14	102987883	102987884	rs12894354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q32.31		rs12894354-C	0.644532	3E-10		0.014586121	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102989876	102989877	rs11626438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.31		rs11626438-G	0.300365	8E-10		0.015146187	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102989876	102989877	rs11626438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.31		rs11626438-G	0.300372	6E-10		0.015196611	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102992147	102992147	rs10672196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.31		rs10672196-CTCTT	0.456515	3E-24		0.023453724	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102992147	102992147	rs10672196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.31		rs10672196-CTCTT	0.456557	1E-39		0.0289066	[0.025-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102992147	102992147	rs10672196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.31		rs10672196-CTCTT	0.456533	1E-39		0.030009627	[0.026-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102994064	102994065	rs4900538	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	14q32.31		rs4900538-T	0.355	9E-25		0.12	[-0.14--0.1] % decrease	Affymetrix [NR] (imputed)	N
1370	chr14	102994064	102994065	rs4900538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.31		rs4900538-C	0.645565	1E-15		0.019280674	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	102994064	102994065	rs4900538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q32.31	intergenic	rs4900538-C	0.6438	1E-15		0.02974053	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1370	chr14	102994064	102994065	rs4900538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q32.31	intergenic	rs4900538-C	0.6438	4E-18		0.03244305	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1370	chr14	102994548	102994549	rs8007105	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	14q32.31	NR	rs8007105-?	NR	1E-6		0.05294	[0.031-0.074] unit decrease novel	Illumina [6108953] (imputed)	N
1370	chr14	102995667	102995668	rs4906214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	14q32.31		rs4906214-A	NR	5E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1370	chr14	103007934	103007935	rs62006410	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	14q32.31	NR	rs62006410-C		3E-7		0.1557	[0.096-0.215] SD units increase	NR [10700000] (imputed)	N
1370	chr14	103009622	103009623	rs8022508	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	14q32.31	NR	rs8022508-G	0.4174	1E-6		0.1543	[0.092-0.217] unit increase	Illumina [10677593] (imputed)	N
1370	chr14	103018726	103018727	rs942017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	14q32.31	CTD-2555C10.3	rs942017-A	0.348191	2E-13		0.017290197	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr14	103018726	103018727	rs942017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.31	CTD-2555C10.3	rs942017-A	0.348186	4E-13		0.01713551	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr14	103018726	103018727	rs942017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.31	NR	rs942017-A	0.358566	2E-14				Affymetrix, Illumina [19872809] (imputed)	N
1370	chr14	103018726	103018727	rs942017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	14q32.31	NR	rs942017-A	0.348441	3E-16		0.017251	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1370	chr14	103018726	103018727	rs942017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.31		rs942017-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1370	chr14	103022447	103022447	rs534463003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.31	CTD-2555C10.3	rs534463003-GA	0.467072	2E-16		0.019156687	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr14	103022447	103022447	rs534463003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.31	CTD-2555C10.3	rs534463003-GA	0.467063	3E-16		0.019376704	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr14	103040086	103040087	rs11628318	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	14q32.31	RCOR1	rs11628318-A	NR	2E-10		2.572	[1.78-3.37] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1371	chr14	103044706	103044706	rs368679111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	14q32.31		rs368679111-ACATTCC	NR	4E-11		0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1371	chr14	103050763	103050764	rs4906228	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	14q32.31	RCOR1	rs4906228-A	0.39	2E-8		0.08	[0.053-0.107] unit increase	Affymetrix [9740198] (imputed)	N
1371	chr14	103052175	103052176	rs140754196	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.31		rs140754196-T	0.00778	2E-8		0.8824	[0.58-1.19] unit decrease	Illumina [17945511] (imputed)	N
1371	chr14	103058022	103058023	rs10132160	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q32.31	NR	rs10132160-?	NR	8E-19		0.03939	[0.031-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1371	chr14	103058768	103058769	rs35258120	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.31		rs35258120-G	0.181	5E-44				Affymetrix [10369434] (imputed)	N
1371	chr14	103060636	103060637	rs58507724	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	14q32.31	NR	rs58507724-A	0.01394	3E-9	(UGT2B15)	0.4854	NR unit increase	Illumina [1671387] (imputed)	N
1371	chr14	103076927	103076928	rs4906234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.31	RCOR1	rs4906234-C	0.709119	4E-12		0.017059386	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1371	chr14	103081465	103081465	rs11382616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.31	RCOR1	rs11382616-GC	0.70304	8E-39		0.03295915	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr14	103081465	103081465	rs11382616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.31	RCOR1	rs11382616-GC	0.703005	6E-49		0.03733644	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr14	103081465	103081465	rs11382616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.31	RCOR1	rs11382616-GC	0.7052	6E-26		0.04264941	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr14	103081465	103081465	rs11382616	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q32.31	RCOR1	rs11382616-GC	0.705	3E-35		0.05001955	[0.042-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr14	103082320	103082321	rs72702748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.31	NR	rs72702748-T	NR	2E-10		0.0349	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1371	chr14	103082543	103082567	rs66531927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.31	RCOR1	rs66531927-A	0.670897	4E-12		0.01740405	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1371	chr14	103096605	103096606	rs11627756	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q32.31	RCOR1	rs11627756-T	0.6983	3E-12		0.02754274	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1371	chr14	103100938	103100938	rs35215502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.31	RCOR1	rs35215502-CAT	0.776539	5E-24		0.027892219	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1371	chr14	103111357	103111358	rs1190335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q32.31		rs1190335-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1371	chr14	103113413	103113414	rs1190333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs1190333-C	NR	3E-10		0.0459	[0.032-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1371	chr14	103113551	103113552	rs714827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs714827-A	NR	2E-26		0.0488	[0.04-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1371	chr14	103113551	103113552	rs714827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.31	NR	rs714827-A	NR	9E-41		0.0613	[0.052-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1371	chr14	103115007	103115008	rs117281876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.31	NR	rs117281876-G	NR	9E-11		0.0502	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr14	103155464	103155465	rs12884198	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	14q32.31	RCOR1	rs12884198-A	0.02	1E-7		0.831	[0.52-1.14] unit increase	Illumina [NR] (imputed)	N
1372	chr14	103161200	103161201	rs8014003	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	14q32.31	RCOR1	rs8014003-?		9E-6	(EA)	0.31549707	[0.18-0.45] unit decrease	Illumina [13620258] (imputed)	N
1372	chr14	103161200	103161201	rs8014003	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	14q32.31	RCOR1	rs8014003-?		9E-6	(African American)	0.31549707	[0.18-0.45] unit decrease	Illumina [13620258] (imputed)	N
1372	chr14	103163454	103163455	rs4900550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.31	RCOR1	rs4900550-G	0.227997	2E-12		0.018764962	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr14	103190361	103190362	rs11628569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q32.32	RCOR1	rs11628569-G	0.28968	3E-23		0.024637207	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr14	103190361	103190362	rs11628569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	14q32.32	RCOR1	rs11628569-G	0.2892	2E-12		0.02775302	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1372	chr14	103190842	103190843	rs59457020	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	14q32.32	RCOR1	rs59457020-G	0.12	8E-9				NR [> 9500000] (imputed)	N
1372	chr14	103228416	103228417	rs4906259	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	14q32.32	TRAF3	rs4906259-C	0.17413100000000004	1E-9		1.0500475	[1.03374584627989-1.06660629287547]	NR [9572556] (imputed)	N
1372	chr14	103229432	103229433	rs144308953	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	14q32.32	NR	rs144308953-A	0.015	9E-7		1819.48	[1099-2539.96] unit decrease	Illumina [27449291] (imputed)	N
1372	chr14	103230757	103230758	rs12588969	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q32.32	RCOR1	rs12588969-G	NR	2E-9		1.0766581	NR	Affymetrix, Illumina [8278136] (imputed)	N
1372	chr14	103235011	103235012	rs9989163	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	14q32.32	RCOR1, TRAF3	rs9989163-A	0.49	2E-8		1.029	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1372	chr14	103237777	103237778	rs7143468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs7143468-A	NR	2E-11		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr14	103237777	103237778	rs7143468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs7143468-A	NR	7E-26		0.028	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1372	chr14	103237951	103237952	rs55700915	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	14q32.32	TRAF3	rs55700915-A	0.434	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1372	chr14	103238850	103238851	rs12887759	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	14q32.32	NR	rs12887759-A	0.2176	1E-12		1.048	[1.035-1.061]	Affymetrix [15688218] (imputed)	N
1372	chr14	103238933	103238934	rs12886625	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	14q32.32	NR	rs12886625-G	0.4688	2E-13		1.045	[1.033-1.056]	Affymetrix [15688218] (imputed)	N
1372	chr14	103238933	103238934	rs12886625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	14q32.32		rs12886625-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1372	chr14	103239629	103239630	rs12147883	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	14q32.32	TRAF3	rs12147883-?	0.5017	5E-10		1.1109877	[1.08-1.15]	Affymetrix [15688218] (imputed)	N
1372	chr14	103239629	103239630	rs12147883	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.32	TRAF3	rs12147883-C	0.483	4E-11		0.08	NR SD units increase	Illumina [21568490] (imputed)	N
1372	chr14	103241798	103241799	rs7158166	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q32.32	TRAF3	rs7158166-T	0.406145	6E-13		0.0140645	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1372	chr14	103241798	103241799	rs7158166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.32		rs7158166-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1372	chr14	103243118	103243119	rs75955078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q32.32	TRAF3, RP11-661D19.3	rs75955078-AG	0.25334	8E-11		0.01674367	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1372	chr14	103243407	103243408	rs71421262	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q32.32	TRAF3	rs71421262-A	0.406734	9E-9		0.0115301	[0.0076-0.0155] unit decrease	Affymetrix [NR] (imputed)	N
1372	chr14	103243945	103243946	rs1051750	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Immunoglobulin measurement (zinc sulfate turbidity test)	12,303 Japanese ancestry individuals	NA	14q32.32	TRAF3	rs1051750-?	NR	1E-9		0.08315	[0.056-0.11] unit decrease	Illumina [6108953] (imputed)	N
1372	chr14	103244069	103244070	rs71421264	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	14q32.32	TRAF3	rs71421264-?	NR	3E-11		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1372	chr14	103244069	103244070	rs71421264	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	14q32.32	TRAF3	rs71421264-?	NR	3E-19		0.04345	[0.034-0.053] unit increase novel	Illumina [6108953] (imputed)	N
1372	chr14	103246469	103246470	rs3803286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	14q32.32		rs3803286-G	NR	3E-17		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1372	chr14	103246469	103246470	rs3803286	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	14q32.32		rs3803286-A	0.33	1E-13				NR [NR] (imputed)	N
1372	chr14	103246469	103246470	rs3803286	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	14q32.32		rs3803286-A	0.33	3E-17		0.016	mmol/L decrease	NR [NR] (imputed)	N
1372	chr14	103246469	103246470	rs3803286	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	14q32.32		rs3803286-A	0.33	6E-15		0.012	% increase	NR [NR] (imputed)	N
1372	chr14	103246469	103246470	rs3803286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.32		rs3803286-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1372	chr14	103247843	103247844	rs12887521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q32.32		rs12887521-A	NR	9E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1372	chr14	103249126	103249127	rs4906263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	14q32.32	NR	rs4906263-C	NR	9E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1372	chr14	103249126	103249127	rs4906263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.32	NR	rs4906263-?	NR	7E-20				Affymetrix [~ 8270000] (imputed)	N
1372	chr14	103249126	103249127	rs4906263	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.32	NA	rs4906263-C	0.6562	8E-23		0.0176	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1372	chr14	103249126	103249127	rs4906263	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q32.32	NA	rs4906263-C	0.6562	8E-23		0.0176	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1372	chr14	103249126	103249127	rs4906263	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	14q32.32	NA	rs4906263-C	0.6562	8E-23		0.0176	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1372	chr14	103255460	103255461	rs7145882	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.32	TRAF3	rs7145882-T	0.34231	2E-15		0.0114597	[0.0086-0.0143] unit increase	Affymetrix [12370749]	N
1372	chr14	103256876	103256877	rs12888955	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	14q32.32		rs12888955-A	0.6541	1E-9		1.07		Affymetrix, Illumina [9397031] (imputed)	N
1372	chr14	103256876	103256877	rs12888955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	14q32.32		rs12888955-A	NR	2E-16		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1372	chr14	103256960	103256961	rs56101042	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	14q32.32		rs56101042-?	NR	2E-8		0.93	[0.91-0.96]	Illumina [5170515] (imputed)	N
1372	chr14	103256960	103256961	rs56101042	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	14q32.32	TRAF3	rs56101042-A	0.82	3E-11		0.036	[0.026-0.046] unit decrease	NR [NR] (imputed)	N
1372	chr14	103256960	103256961	rs56101042	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	14q32.32	TRAF3	rs56101042-A	0.82	3E-11		0.036	[0.026-0.046] unit decrease	NR [7647814] (imputed)	N
1372	chr14	103263019	103263020	rs8022180	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	14q32.32	TRAF3	rs8022180-?	NR	3E-20		0.03881	[0.031-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
1372	chr14	103263787	103263788	rs12148050	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	14q32.32	TRAF3	rs12148050-G	NR	1E-6		0.869	[0.81-0.93]	NR [NR] (imputed)	N
1372	chr14	103263787	103263788	rs12148050	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	14q32.32	TRAF3	rs12148050-G	NR	3E-8		0.91	[0.87-0.95]	Illumina [NR] (imputed)	N
1372	chr14	103263787	103263788	rs12148050	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	14q32.32	TRAF3	rs12148050-A	0.36	5E-13		1.09		Illumina [161311]	N
1372	chr14	103265843	103265844	rs12147246	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	14q32.32	TRAF3	rs12147246-A	NR	2E-15		1.0943314	NR	Affymetrix, Illumina [8278136] (imputed)	N
1372	chr14	103267402	103267403	rs3993347	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	14q32.32	TRAF3	rs3993347-T	0.352881	4E-9		0.00861473	[0.0057-0.0115] unit increase	Affymetrix [12370749]	N
1372	chr14	103268410	103268411	rs35919282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	14q32.32		rs35919282-T	0.536597	6E-23		0.0373253	[0.03-0.045] unit decrease	Illumina [13477433] (imputed)	N
1372	chr14	103269754	103269755	rs12436513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q32.32		rs12436513-A	NR	8E-87		0.0425	[0.038-0.047] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1372	chr14	103274546	103274547	rs2015407	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	14q32.32	TRAF3	rs2015407-?	NR	6E-6		1.11	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
1372	chr14	103274849	103274850	rs5811081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.32	TRAF3	rs5811081-C	0.854325	6E-10		0.020609591	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr14	103279794	103279795	rs12878532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q32.32		rs12878532-T	NR	9E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1372	chr14	103280656	103280657	rs12432676	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	14q32.32	TRAF3	rs12432676-?	NR	2E-24		0.04704	[0.038-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1372	chr14	103282601	103282602	rs12434396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.32	Intergenic	rs12434396-C	0.3437	3E-8	(MTAG)	0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1372	chr14	103283272	103283273	rs12882491	30692554	Bustos BI	2019-01-28	Sci Rep	Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry.	Gallstone disease	529 Chilean Latino cases, 566 Chilean Latino controls	626 Chilean Latino cases, 1,017 Chilean Latino controls, 1,909 European ancestry cases, 4,183 European ancestry controls	14q32.32	TRAF3	rs12882491-C	0.69	1E-7	(Chilean Latinos)	1.4	[1.20-1.60]	Affymetrix [9433911] (imputed)	N
1372	chr14	103284611	103284612	rs35471408	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.32	NR	rs35471408-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1373	chr14	103286601	103286602	rs149154820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.32	NR	rs149154820-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1373	chr14	103301071	103301072	rs7146581	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q32.32	TRAF3	rs7146581-T	0.2246	2E-8		0.027423386	[0.018-0.037] unit increase	NR [NR]	N
1373	chr14	103304424	103304425	rs7143963	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q32.32	NR	rs7143963-C	NR	8E-11		0.021	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1373	chr14	103304424	103304425	rs7143963	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q32.32	ZNF839, CINP, TECPR2, ANKRD9, MIR4309, RCOR1, AMN, CDC42BPB, TNFAIP2, EXOC3L4, LINC00605, SNORA28, EIF5	rs7143963-T	0.177574262936733	7E-9		0.020552438	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1373	chr14	103304424	103304425	rs7143963	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.32	TRAF3	rs7143963-T	0.204	1E-6		0.018	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1373	chr14	103304424	103304425	rs7143963	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.32	TRAF3	rs7143963-T	0.181	6E-7	(EA, men)	0.026	[0.016-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1373	chr14	103304424	103304425	rs7143963	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.32	TRAF3	rs7143963-T	0.18	3E-7	(EA)	0.02	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1373	chr14	103307777	103307778	rs78595253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs78595253-G	NR	3E-13		0.0555	[0.041-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103307777	103307778	rs78595253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs78595253-G	NR	5E-28		0.0834	[0.069-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103311855	103311855	rs573617232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	14q32.32	TRAF3	rs573617232-AT	0.2281	4E-13		0.03110942	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1373	chr14	103320047	103320048	rs8017944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	14q32.32		rs8017944-G	NR	7E-31		0.0342	[0.028-0.04] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1373	chr14	103320047	103320048	rs8017944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q32.32	TRAF3	rs8017944-G	0.201531	6E-30		0.031355426	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1373	chr14	103333254	103333255	rs76358155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.32		rs76358155-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1373	chr14	103342048	103342049	rs1131877	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	14q32.32	TRAF3, XRCC3	rs1131877-C	0.2518	2E-16		0.0172	[0.013-0.021] unit increase	Illumina [246328]	N
1373	chr14	103348918	103348918	rs368131309	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.32	NR	rs368131309-GT	0.2559	4E-6	(EA)	0.0371	[0.021-0.053] unit decrease	Illumina [~ 11800000] (imputed)	N
1373	chr14	103350196	103350197	rs12590238	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	14q32.32	NA	rs12590238-C	0.8339	2E-9		0.0141	[0.0096-0.0186] unit decrease	NR [~ 27400000] (imputed)	N
1373	chr14	103350812	103350813	rs7157267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	14q32.32	TRAF3	rs7157267-C	0.221114	3E-28		0.029380327	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1373	chr14	103350812	103350813	rs7157267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	14q32.32	NR	rs7157267-C	0.222096	2E-40		0.030407	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1373	chr14	103359491	103359492	rs8008502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q32.32	TRAF3	rs8008502-A	0.201525	9E-17		0.022971867	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1373	chr14	103361735	103361736	rs11160706	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	14q32.32		rs11160706-G	0.779	3E-19				Affymetrix [10369434] (imputed)	N
1373	chr14	103361735	103361736	rs11160706	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs11160706-A	0.259043	1E-38				Affymetrix, Illumina [23472807] (imputed)	N
1373	chr14	103361936	103361937	rs57521303	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	14q32.32		rs57521303-T	0.778	8E-18				Affymetrix [10369434] (imputed)	N
1373	chr14	103370162	103370163	rs9671376	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q32.32		rs9671376-C	0.776	9E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1373	chr14	103374159	103374160	rs117897999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs117897999-A	NR	2E-13		0.0494	[0.036-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1373	chr14	103376030	103376031	rs4906272	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q32.32	NR	rs4906272-C	0.7332	5E-11		0.0299	[0.021-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1373	chr14	103377320	103377321	rs10133111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs10133111-A	NR	3E-11		0.0222	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103377320	103377321	rs10133111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs10133111-A	NR	3E-17		0.0283	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103377320	103377321	rs10133111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs10133111-A	NR	6E-28		0.035	[0.029-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103377320	103377321	rs10133111	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	14q32.32	TRAF3	rs10133111-?	0.20	5E-6				Illumina [302783]	N
1373	chr14	103380402	103380403	rs76327888	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	14q32.32	NR	rs76327888-T	0.1721	3E-12		0.022949627	[0.017-0.029] unit increase	Affymetrix [10549349] (imputed)	N
1373	chr14	103382037	103382038	rs2224234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	14q32.32	TRAF3	rs2224234-C	0.2009	5E-15		0.0355251	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1373	chr14	103383203	103383203	rs111476533	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	14q32.32	TRAF3	rs111476533-G	0.7967	7E-12		0.0851	[0.061-0.109] unit increase	NR [9744772] (imputed)	N
1373	chr14	103388794	103388795	rs113016035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs113016035-T	NR	2E-24		0.0621	[0.05-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103398705	103398706	rs1190234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.32	NR	rs1190234-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1373	chr14	103401203	103401204	rs12432253	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.32	NR	rs12432253-G	0.122	1E-9		0.0102347	[0.0069-0.0135] unit increase	NR [9732723] (imputed)	N
1373	chr14	103406074	103406075	rs17101081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs17101081-A	NR	1E-15		0.0508	[0.038-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1373	chr14	103406074	103406075	rs17101081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs17101081-A	NR	7E-11		0.0395	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1373	chr14	103413533	103413534	rs34468732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs34468732-C	NR	3E-13		0.0627	[0.046-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1374	chr14	103416095	103416096	rs12590961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs12590961-A	NR	4E-24		0.0372	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr14	103429771	103429772	rs35162324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs35162324-A	NR	1E-18		0.0678	[0.053-0.083] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr14	103469232	103469233	rs36040787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs36040787-T	NR	2E-11		0.0343	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1374	chr14	103482780	103482781	rs72704754	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs72704754-A	NR	3E-13		0.0273	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1374	chr14	103484783	103484784	rs35030701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs35030701-A	NR	1E-84		0.1273	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr14	103484824	103484825	rs751837	21471979	Kumar V	2011-04-07	J Hum Genet	Common variants on 14q32 and 13q12 are associated with DLBCL susceptibility.	Large B-cell lymphoma	74 Japanese ancestry cases, 934 Japanese ancestry controls	325 Japanese ancestry cases, 3,309 Japanese ancestry controls	14q32.32	CDC42BPB	rs751837-?	NR	3E-7		3.51	[2.13-5.88]	Illumina [444361]	N
1374	chr14	103499430	103499431	rs113710685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.32	NR	rs113710685-A	NR	1E-10		0.0409	[0.028-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr14	103504086	103504087	rs117671917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs117671917-A	NR	2E-15		0.0681	[0.051-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1374	chr14	103504192	103504193	rs117911063	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	14q32.32	NR	rs117911063-T	0.031	4E-7		0.019	[0.012-0.026] unit increase	NR [7666894] (imputed)	N
1374	chr14	103511032	103511033	rs370308370	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	14q32.32		rs370308370-A	NR	3E-9		4.35	[2.9-5.8] unit decrease	Illumina [94681438]	N
1374	chr14	103516225	103516226	rs188255466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	CDC42BPB	rs188255466-C	0.00134000000000001	5E-20		0.31896096	[0.25-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
1374	chr14	103540098	103540099	rs7143479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	14q32.32	CDC42BPB	rs7143479-A	NR	4E-8		0.0186926	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1374	chr14	103540098	103540099	rs7143479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	14q32.32	CDC42BPB	rs7143479-A	NR	3E-8		0.018731	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1375	chr14	103548231	103548232	rs112432193	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.32		rs112432193-A	0.925	7E-9				Affymetrix [10369434] (imputed)	N
1375	chr14	103550387	103550388	rs28592811	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	14q32.32	NR	rs28592811-?	NR	1E-17	(conditional on round 3)	0.03641344	[0.028-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1375	chr14	103553200	103553201	rs117297360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs117297360-C	NR	4E-13		0.068	[0.05-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr14	103559201	103559202	rs57913635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	14q32.32	NR	rs57913635-T	0.537059	1E-23		0.038706	[0.031-0.046] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1375	chr14	103561400	103561401	rs12880500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs12880500-G	NR	2E-10		0.0606	[0.042-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr14	103561552	103561553	rs150110852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	RP11-736N17.8	rs150110852-A	0.00222900000000004	4E-9		0.14254853	[0.095-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr14	103563194	103563195	rs8017161	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	14q32.32	EXOC3L4	rs8017161-G	0.599504	1E-300		0.0247453	[0.024-0.026] unit decrease	Affymetrix [13995440] (imputed)	N
1375	chr14	103563194	103563195	rs8017161	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	14q32.32	TNFAIP2	rs8017161-A	0.40	3E-13		1.22	[1.16-1.27]	Illumina [507467]	N
1375	chr14	103563420	103563421	rs11628185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	14q32.32		rs11628185-A	NR	2E-467		0.0887	[0.085-0.092] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1375	chr14	103563546	103563547	rs11624069	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	14q32.32		rs11624069-C	NR	2E-17		0.0174	[0.013-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1375	chr14	103563546	103563547	rs11624069	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	14q32.32	EXOC3L4	rs11624069-T	0.590315	3E-23		0.00219078	[0.0017-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1375	chr14	103563546	103563547	rs11624069	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	14q32.32	LOC107984640, EXOC3L4	rs11624069-?		2E-88		0.0835	[0.075-0.092] unit increase	Illumina [31500000] (imputed)	N
1375	chr14	103564806	103564807	rs59643720	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	14q32.32		rs59643720-C	NR	3E-38		0.316412	[0.27-0.36] unit increase	NR [5054572] (imputed)	N
1375	chr14	103564819	103564820	rs17101241	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	14q32.32	CDC42BPB, EXOC3L4	rs17101241-T	0.25	2E-11		6.7	z-score increase	Affymetrix [4311822] (imputed)	N
1375	chr14	103564819	103564820	rs17101241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	14q32.32	NR	rs17101241-A	0.740963	5E-10		0.110296	[0.076-0.145] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1375	chr14	103564934	103564935	rs61462345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs61462345-C	0.754835	3E-267				Affymetrix, Illumina [17210439] (imputed)	N
1375	chr14	103565369	103565370	rs62006947	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q32.32	NR	rs62006947-A	0.753753	2E-259		0.076701	[0.072-0.081] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1375	chr14	103566161	103566162	rs7151779	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	14q32.32		rs7151779-?	NR	4E-6		1.318	[1.172-1.483]	Affymetrix [7975321] (imputed)	N
1375	chr14	103566161	103566162	rs7151779	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	14q32.32	NR	rs7151779-?	NR	2E-12		0.0342	[0.025-0.044] unit increase	Illumina [~ 7800000] (imputed)	N
1375	chr14	103566784	103566785	rs2297067	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	14q32.32	NR	rs2297067-?	NR	3E-6		3.109456	[1.8-4.42] unit increase	Illumina [30743395] (imputed)	N
1375	chr14	103566784	103566785	rs2297067	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	14q32.32	EXOC3L4, TNFAIP2	rs2297067-T	0.18000000000000005	6E-19		1.3888888	NR	Illumina [1143634] (imputed)	N
1375	chr14	103566784	103566785	rs2297067	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	14q32.32	C14orf73	rs2297067-T	NR	2E-10		3.538	[2.45-4.62] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.32		rs2297066-G	NR	3E-107		0.0485	[0.044-0.053] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	14q32.32	NR	rs2297066-G	NR	7E-12		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs2297066-G	NR	6E-427		0.1222	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.32	EXOC3L4	rs2297066-G	0.243019	3E-11		0.01745266	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.32	EXOC3L4	rs2297066-G	0.243018	8E-79		0.04969408	[0.045-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	EXOC3L4	rs2297066-G	0.243003	5E-172		0.07393845	[0.069-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs2297066-G	0.241816	2E-131				Affymetrix, Illumina [24588908] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.32	NR	rs2297066-G	0.242713	4E-112		0.050462	[0.046-0.055] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1375	chr14	103566834	103566835	rs2297066	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	14q32.32	EXOC3L4	rs2297066-G	0.219	8E-9		0.03	[0.02-0.04] unit increase	Illumina [NR] (imputed)	N
1375	chr14	103568487	103568488	rs138887682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	EXOC3L4	rs138887682-A	0.00158999999999998	2E-13		0.23436053	[0.17-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr14	103568633	103568634	rs370648114	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	14q32.32		rs370648114-?	NR	7E-11		0.467049	[0.32-0.61] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103570131	103570132	rs151184170	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.32		rs151184170-C	0.755	5E-55				Affymetrix [10369434] (imputed)	N
1375	chr14	103570384	103570385	rs572934887	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	14q32.32		rs572934887-?	NR	4E-9		0.45548	[0.3-0.61] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103570693	103570694	rs373755145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	14q32.32		rs373755145-?	NR	7E-11		0.360528	[0.26-0.46] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103570934	103570935	rs9324058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.32		rs9324058-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1375	chr14	103571697	103571697	rs765807623	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	14q32.32	EXOC3L4	rs765807623-CTG	0.2495	7E-9		0.02500223	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1375	chr14	103571836	103571837	rs78702790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	14q32.32		rs78702790-C	0.221259	2E-89		0.0840566	[0.076-0.092] unit decrease	Illumina [13476165] (imputed)	N
1375	chr14	103572814	103572815	rs944002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q32.32		rs944002-G	0.246606	3E-28		0.0423115	[0.035-0.05] unit increase	Illumina [13478928] (imputed)	N
1375	chr14	103572814	103572815	rs944002	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q32.32	EXOC3L4	rs944002-?	NR	9E-22		0.04699	[0.037-0.057] unit increase novel	Illumina [6108953] (imputed)	N
1375	chr14	103572814	103572815	rs944002	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	14q32.32	C14orf73	rs944002-A	NR	5E-11		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1375	chr14	103572814	103572815	rs944002	22010049	Middelberg RP	2011-11-01	Hum Mol Genet	Loci affecting gamma-glutamyl transferase in adults and adolescents show age x SNP interaction and cardiometabolic disease associations.	Gamma glutamyl transferase levels	12,526 European ancestry individuals	NA	14q32.32	C14orf73	rs944002-G	0.22	5E-13		0.129	[0.094-0.164] unit increase	Illumina [2380486] (imputed)	N
1375	chr14	103572814	103572815	rs944002	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	14q32.32	C14orf73	rs944002-G	0.21	6E-29		6.3	[4.90-7.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1375	chr14	103573120	103573121	rs759832196	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	14q32.32		rs759832196-?	NR	4E-16		0.409483	[0.3-0.52] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103573120	103573121	rs759832196	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	14q32.32		rs759832196-?	NR	3E-10		0.412194	[0.29-0.54] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103575069	103575070	rs2274685	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	14q32.32		rs2274685-?	NR	2E-9		0.00556103	[0.0037-0.0074] unit decrease	NR [NR]	N
1375	chr14	103575069	103575070	rs2274685	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	14q32.32	EXOC3L4	rs2274685-?	NR	1E-78		0.09285	[0.083-0.103] unit increase novel	Illumina [6108953] (imputed)	N
1375	chr14	103575520	103575521	rs149136706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.32	EXOC3L4	rs149136706-C	0.231576	2E-36		0.03536091	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr14	103576399	103576400	rs138615574	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	14q32.32		rs138615574-?	NR	3E-40		0.383302	[0.32-0.44] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103576399	103576400	rs138615574	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	14q32.32		rs138615574-?	NR	6E-21		0.327792	[0.26-0.4] unit decrease	NR [9800000] (imputed)	N
1375	chr14	103576414	103576415	rs729184	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs729184-G	NR	8E-14		0.0321	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr14	103576442	103576443	rs729183	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.32	EXOC3L4	rs729183-C	0.218733	2E-10		0.018458758	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1375	chr14	103576443	103576444	rs744153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	EXOC3L4	rs744153-G	0.218324	1E-20		0.027121728	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1375	chr14	103588381	103588382	rs62007496	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	14q32.32	LOC105370683	rs62007496-?	NR	3E-6		0.262	[0.15-0.37] unit decrease	Illumina [5574300] (imputed)	N
1375	chr14	103588514	103588515	rs2282037	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Firmicutes.c_Negativicutes.o_Selenomonadales)	7,738 European ancestry individuals	NA	14q32.32		rs2282037-C	0.47803130491494294	4E-8		0.102228515	[0.066-0.139] unit decrease	Illumina [5584686] (imputed)	N
1375	chr14	103588514	103588515	rs2282037	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Firmicutes.c_Negativicutes)	7,738 European ancestry individuals	NA	14q32.32		rs2282037-C	0.47803130491494294	4E-8		0.10223344	[0.066-0.139] unit decrease	Illumina [5584686] (imputed)	N
1375	chr14	103597203	103597204	rs2297065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs2297065-G	NR	9E-12		0.0492	[0.035-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1375	chr14	103601137	103601138	rs8176396	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	14q32.32		rs8176396-T	0.032	1E-16		0.2126	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1375	chr14	103603494	103603495	rs4283165	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	14q32.32		rs4283165-A	0.6455	7E-9		0.04	[0.02-0.06] unit increase	Illumina [26711992] (imputed)	N
1375	chr14	103603652	103603653	rs1052912	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	14q32.32		rs1052912-A	NR	1E-6		1.2122	[0.73-1.69] unit increase	Illumina [NR] (imputed)	N
1375	chr14	103612586	103612587	rs117124915	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	14q32.32		rs117124915-G	0.014632882	6E-6		0.13335106	[0.076-0.191] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1375	chr14	103650918	103650919	rs118140944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs118140944-G	NR	2E-11		0.0458	[0.032-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr14	103660182	103660183	rs56223657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	14q32.32	NR	rs56223657-A	NR	3E-11		0.0386	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1375	chr14	103677239	103677240	rs71417845	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	14q32.32	NR	rs71417845-?	NR	1E-6		0.52	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1376	chr14	103681173	103681174	rs72706669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.32		rs72706669-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1376	chr14	103689331	103689332	rs1033904	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	14q32.32	AL161669.1	rs1033904-?	NR	7E-6				Affymetrix, Illumina [1184972]	N
1376	chr14	103721705	103721706	rs57130351	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	14q32.32	NR	rs57130351-C	0.43	9E-7		0.3	[0.18-0.42] unit decrease	Illumina [9469131] (imputed)	N
1376	chr14	103781815	103781816	rs10144261	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs10144261-C	0.467965	1E-12				Affymetrix, Illumina [19872809] (imputed)	N
1376	chr14	103782840	103782841	rs10135205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	14q32.32		rs10135205-G	0.451904	3E-11		0.01494773	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1376	chr14	103782840	103782841	rs10135205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.32		rs10135205-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1376	chr14	103789799	103789800	rs7401414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.32		rs7401414-A	0.11445	2E-10		0.022921728	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1376	chr14	103789799	103789800	rs7401414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.32		rs7401414-A	0.114452	2E-9		0.021758197	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1376	chr14	103792841	103792842	rs73354327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q32.32		rs73354327-C	0.114873	1E-13		0.026166612	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr14	103812319	103812320	rs12432904	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q32.32	EIF5	rs12432904-T	0.3359	8E-10		0.015387827	[0.01-0.02] unit decrease	Affymetrix [11515109] (imputed)	N
1377	chr14	103812319	103812320	rs12432904	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q32.32	NR	rs12432904-G	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1377	chr14	103814574	103814575	rs138871903	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	14q32.32	NR	rs138871903-?	NR	2E-41		0.1988	[0.17-0.23] unit decrease novel	Illumina [6108953] (imputed)	N
1377	chr14	103822761	103822762	rs17616316	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	14q32.32	EIF5	rs17616316-G	0.07	8E-11	(MCH)	0.014	[-0.00364-0.03164] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1377	chr14	103833064	103833065	rs7149169	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.32	NR	rs7149169-A	NR	2E-8		5.649	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1377	chr14	103835127	103835128	rs12898000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs12898000-C	0.623231	1E-19				Affymetrix, Illumina [24649327] (imputed)	N
1377	chr14	103835127	103835128	rs12898000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q32.32	NR	rs12898000-C	0.700918	8E-20		0.018686	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1377	chr14	103835127	103835128	rs12898000	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	14q32.32	EIF5, MARK3	rs12898000-?	NR	4E-12		0.04332	[0.031-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1377	chr14	103838908	103838909	rs62006258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.32	RP11-600F24.1	rs62006258-C	0.226361	1E-13		0.020088589	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr14	103839997	103839998	rs17616464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs17616464-C	0.940629	3E-11				Affymetrix, Illumina [22063850] (imputed)	N
1377	chr14	103839997	103839998	rs17616464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	14q32.32		rs17616464-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1377	chr14	103840903	103840904	rs11629297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	14q32.32	NR	rs11629297-G	0.732661	4E-178		0.061045	[0.057-0.065] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1377	chr14	103840903	103840904	rs11629297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.32	NR	rs11629297-?	NR	1E-6		4.867	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1377	chr14	103841295	103841296	rs8006994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	14q32.32		rs8006994-T	NR	2E-108		0.0503	[0.046-0.055] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1377	chr14	103841295	103841296	rs8006994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	14q32.32	NR	rs8006994-C	0.627875	1E-13		0.037031	[0.027-0.047] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1377	chr14	103841295	103841296	rs8006994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs8006994-T	0.672855	4E-195				Affymetrix, Illumina [23467995] (imputed)	N
1377	chr14	103841352	103841354	rs375246367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	14q32.32	RP11-600F24.1	rs375246367-C	0.7329	3E-37		0.05145047	[0.044-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1377	chr14	103846715	103846716	rs8016326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	14q32.32		rs8016326-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1377	chr14	103846715	103846716	rs8016326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	14q32.32		rs8016326-G	0.263	4E-29				Affymetrix [10369434] (imputed)	N
1377	chr14	103846715	103846716	rs8016326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	14q32.32		rs8016326-G	0.263143	2E-145		0.06483955	[0.06-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr14	103846798	103846799	rs77697190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.32		rs77697190-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1377	chr14	103846798	103846799	rs77697190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	14q32.32	MARK3	rs77697190-T	0.0594	2E-14		0.05700798	[0.042-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1377	chr14	103847054	103847055	rs59669989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.32	MARK3	rs59669989-A	0.058721	3E-20		0.043361492	[0.034-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr14	103847273	103847274	rs8020912	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	14q32.32		rs8020912-C	0.262	5E-60				Affymetrix [10369434] (imputed)	N
1377	chr14	103847273	103847274	rs8020912	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	14q32.32	MARK3	rs8020912-T	0.7363	7E-31		0.04676427	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1377	chr14	103847286	103847287	rs8022179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q32.32	MARK3	rs8022179-A	0.73727	2E-105		0.055187855	[0.05-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr14	103847286	103847287	rs8022179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	14q32.32	MARK3	rs8022179-A	0.7364	3E-50		0.06036326	[0.052-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1377	chr14	103847759	103847760	rs74392582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	14q32.32	NR	rs74392582-C	0.942118	2E-13		0.030074	[0.022-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1377	chr14	103847759	103847760	rs74392582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.32	NR	rs74392582-T	0.0554016	8E-33				Affymetrix, Illumina [20825802] (imputed)	N
1377	chr14	103848781	103848782	rs117998971	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.32	NR	rs117998971-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1377	chr14	103851271	103851272	rs3759579	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	14q32.32	NR	rs3759579-A	0.41	9E-11		0.0119	[0.0082-0.0156] unit decrease	NR [NR]	N
1377	chr14	103851271	103851272	rs3759579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.32	MARK3	rs3759579-G	0.589865	6E-14		0.017032433	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr14	103851271	103851272	rs3759579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.32	MARK3	rs3759579-G	0.589871	4E-9		0.013452962	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr14	103851271	103851272	rs3759579	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	14q32.32	MARK3	rs3759579-A	0.41	1E-10		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1377	chr14	103851774	103851775	rs11627567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	14q32.32		rs11627567-T	NR	2E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1377	chr14	103852724	103852725	rs3825566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.32		rs3825566-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1377	chr14	103859143	103859143	rs527864481	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	14q32.32	MARK3	rs527864481-CT	0.3538	6E-26		0.0215	[0.018-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1377	chr14	103859143	103859143	rs527864481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.32	MARK3	rs527864481-CT	0.354221	7E-17		0.019879343	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr14	103859961	103859962	rs8014182	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	14q32.32	MARK3	rs8014182-T	0.1357	5E-21		0.3397	[0.27-0.41] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1377	chr14	103860099	103860100	rs36003065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	14q32.32	MARK3	rs36003065-C	0.506284	1E-10		0.014590061	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1377	chr14	103860205	103860206	rs12889639	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	14q32.32	MARK3	rs12889639-A	0.65	1E-10		6.42	z-score increase	Affymetrix [4314223] (imputed)	N
1377	chr14	103860308	103860309	rs12890750	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	14q32.32	NR	rs12890750-G	0.6392	3E-9		0.0284	[0.019-0.038] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1377	chr14	103861705	103861706	rs56227024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	14q32.32	MARK3	rs56227024-G	0.283383	2E-11		0.016507166	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1377	chr14	103863475	103863476	rs11627052	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	14q32.32	MARK3	rs11627052-A	0.22	5E-9		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1377	chr14	103863544	103863545	rs7149767	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	14q32.32	NR	rs7149767-A	0.274	7E-6		1.736	[1.361-2.213]	Illumina [274400]	N
1377	chr14	103877883	103877884	rs12898029	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	14q32.32		rs12898029-?	NR	6E-10				NR [9705931] (imputed)	N
1377	chr14	103881561	103881565	rs35816040	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.32		rs35816040-?	NR	3E-28		0.0232417	[0.019-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1377	chr14	103881561	103881565	rs35816040	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q32.32	MARK3	rs35816040-TAACA	0.655881	6E-16	(men)	0.0417568	[0.031-0.052] unit increase	NR [17166351] (imputed)	N
1377	chr14	103881561	103881565	rs35816040	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q32.32	MARK3	rs35816040-TAACA	0.655201	3E-34		0.0425841	[0.036-0.05] unit increase	NR [17166351] (imputed)	N
1377	chr14	103881561	103881565	rs35816040	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	14q32.32	MARK3	rs35816040-TAACA	0.654606	2E-18	(women)	0.0418853	[0.032-0.051] unit increase	NR [17166351] (imputed)	N
1377	chr14	103883632	103883633	rs11623869	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	14q32.32	MARK3	rs11623869-T	0.35	5E-16		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1377	chr14	103885290	103885291	rs35233301	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	14q32.32	NR	rs35233301-G	0.283465	1E-8		0.0440837	[0.029-0.059] unit increase	Affymetrix [17914406] (imputed)	N
1377	chr14	103894070	103894071	rs62007683	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	14q32.32	MARK3	rs62007683-G	0.6532	3E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1377	chr14	103894222	103894223	rs62007684	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.32	MARK3	rs62007684-T	0.657099	5E-104		0.0424002	[0.039-0.046] unit increase	NR [13737936] (imputed)	N
1377	chr14	103895301	103895302	rs17679259	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.32	MARK3, CKB, TRMT61A, BAG5, KLC1, RP11-73M18.2, APOPT1	rs17679259-?		2E-9				NR [7428630] (imputed)	N
1377	chr14	103895301	103895302	rs17679259	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	14q32.32	MARK3	rs17679259-A	0.869	2E-17		0.3393	[0.26-0.42] mmHg increase	Affymetrix [NR] (imputed)	N
1377	chr14	103898524	103898525	rs1951389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.32		rs1951389-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1377	chr14	103899168	103899169	rs4900575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.32		rs4900575-?	NR	2E-56				NR [~ 8900000] (imputed)	N
1377	chr14	103899343	103899344	rs62007686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.32		rs62007686-?	NR	1E-106				NR [~ 8900000] (imputed)	N
1377	chr14	103899343	103899344	rs62007686	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.32		rs62007686-?	NR	2E-91		0.0436142	[0.039-0.048] unit increase	Affymetrix [20259828] (imputed)	N
1377	chr14	103900480	103900481	rs35224956	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	14q32.32	MARK3	rs35224956-?	NR	3E-9		0.0306211	[0.02-0.041] unit increase	Illumina [4804024] (imputed)	N
1377	chr14	103900826	103900827	rs6575988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	14q32.32		rs6575988-C	0.486807	2E-14		0.0334942	[0.025-0.042] unit increase	Illumina [13471440] (imputed)	N
1377	chr14	103909280	103909280	rs5811107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q32.32		rs5811107-CT	NR	7E-17		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1377	chr14	103909280	103909280	rs5811107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q32.32		rs5811107-CT	NR	3E-46		0.0194	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1377	chr14	103923474	103923475	rs2273699	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	14q32.32	MARK3	rs2273699-A	0.645165	1E-16				Affymetrix, Illumina [NR] (imputed)	N
1378	chr14	103943992	103943992	rs144422508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	14q32.32		rs144422508-GTC	NR	3E-8		0.0176	[0.011-0.024] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1378	chr14	103953500	103953501	rs12878548	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q32.32	NR	rs12878548-T	0.2821	2E-10		0.029197985	[0.020-0.038] unit decrease	NR [NR]	N
1378	chr14	103953665	103953666	rs55859054	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	14q32.32	MARK3	rs55859054-?	NR	1E-9		1.0513036	NR	Affymetrix [9154080] (imputed)	N
1378	chr14	103959288	103959289	rs17617994	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.32		rs17617994-T	0.12	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
1378	chr14	103959288	103959289	rs17617994	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.32	NR	rs17617994-T	0.1239	3E-10				NR [9056863] (imputed)	N
1378	chr14	103959288	103959289	rs17617994	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	14q32.32	NR	rs17617994-?		6E-8	(CCL16)	0.3968	[NR] unit decrease	Illumina [NR]	N
1378	chr14	103960025	103960026	rs56365443	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	14q32.32	NR	rs56365443-G	0.3202	2E-8		0.0238	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1378	chr14	103974234	103974235	rs2403192	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	14q32.33		rs2403192-?	NR	2E-6		0.749947	[0.63-0.87]	NR [663102]	N
1378	chr14	103975471	103975472	rs75837874	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.33		rs75837874-?	NR	3E-34		0.0385635	[0.032-0.045] unit increase	Affymetrix [20259828] (imputed)	N
1378	chr14	103980133	103980134	rs4906332	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	14q32.33	CKB, MARK3	rs4906332-A	0.659	2E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
1378	chr14	103980644	103980645	rs8018968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	14q32.33		rs8018968-A	0.715588	3E-20		0.023136815	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	103981941	103981942	rs35771849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	14q32.33		rs35771849-G	0.307671	2E-14		0.0169433	[0.013-0.021] unit decrease	Illumina [13479295] (imputed)	N
1378	chr14	103981941	103981942	rs35771849	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	14q32.33	MARK3, CKB	rs35771849-?	NR	9E-17		0.026200265	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
1378	chr14	103984293	103984294	rs2246490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	14q32.33		rs2246490-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1378	chr14	103984536	103984537	rs911549	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q32.33	CKB	rs911549-T	0.3628	2E-7		0.0348	[0.022-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1378	chr14	103987139	103987140	rs2071407	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.33	NR	rs2071407-T	NR	2E-14		7.686	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1378	chr14	103988179	103988180	rs1136165	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.33	NR	rs1136165-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1378	chr14	103988179	103988180	rs1136165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	14q32.33		rs1136165-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1378	chr14	103989596	103989597	rs11353836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q32.33		rs11353836-A	NR	8E-11		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1378	chr14	103989891	103989892	rs3759582	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	14q32.33	MARK3	rs3759582-C	0.1371	3E-9		0.5869	[0.39-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1378	chr14	103990744	103990745	rs2765042	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	14q32.33	ENSG00000260285	rs2765042-A	NR	3E-8		5.518	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1378	chr14	103990798	103990799	rs3759584	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		14q32.33	CKB	rs3759584-T	0.636608	1E-11		0.009739	[0.0069-0.0126] unit increase	Affymetrix [12370749]	N
1378	chr14	103990798	103990799	rs3759584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	14q32.33		rs3759584-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1378	chr14	103991477	103991478	rs2765041	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	14q32.33	NR	rs2765041-A	0.709789	3E-10		0.012943	[0.0089-0.017] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1378	chr14	103991477	103991478	rs2765041	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	14q32.33	RP11-600F24.7	rs2765041-A	0.7101	3E-10		0.02492265	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q32.33	RP11-600F24.7	rs11160752-G	0.290343	6E-28		0.027002035	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q32.33	RP11-600F24.7	rs11160752-G	0.290324	8E-33		0.02941571	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.33	RP11-600F24.7	rs11160752-G	0.290326	7E-17		0.021134445	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.33	RP11-600F24.7	rs11160752-G	0.290309	1E-19		0.02293788	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs11160752-G	0.288139	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
1378	chr14	103992095	103992096	rs11160752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q32.33	NR	rs11160752-G	0.289564	4E-14		0.015595	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1378	chr14	103992591	103992592	rs75482283	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	14q32.33	RP11-600F24.7	rs75482283-A	0.1396	3E-10		0.0591	[0.041-0.078] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1378	chr14	103999346	103999347	rs911555	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q32.33	TRMT61A	rs911555-C	NR	2E-9		0.01857964	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1378	chr14	104001516	104001517	rs2756119	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	14q32.33		rs2756119-?	NR	9E-9		0.0121434	[0.008-0.0163] unit increase	NR [6912294] (imputed)	N
1378	chr14	104004310	104004311	rs8014069	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.33	NR	rs8014069-A	NR	3E-9		5.926	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1378	chr14	104006715	104006716	rs12147596	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	14q32.33	TRMT61A	rs12147596-C		2E-9		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1378	chr14	104007499	104007500	rs11160753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.33	TRMT61A	rs11160753-T	0.754542	2E-22		0.0252407	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1378	chr14	104007499	104007500	rs11160753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.33	NR	rs11160753-T	0.749244	2E-24		0.023809	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1378	chr14	104007499	104007500	rs11160753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	14q32.33	TRMT61A	rs11160753-T	0.7527	1E-12		0.03011804	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q32.33		rs12885878-G	NR	1E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.33	TRMT61A	rs12885878-G	0.773134	1E-14		0.020926686	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs12885878-G	0.774187	2E-23				Affymetrix, Illumina [24332387] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs12885878-G	0.770754	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs12885878-G	0.772672	1E-30				Affymetrix, Illumina [24246363] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.33	NR	rs12885878-G	0.768913	5E-32		0.026594	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1378	chr14	104007554	104007555	rs12885878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.33		rs12885878-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1378	chr14	104007750	104007751	rs113044050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	14q32.33		rs113044050-T	NR	4E-8		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1378	chr14	104007750	104007751	rs113044050	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	14q32.33		rs113044050-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1378	chr14	104008419	104008420	rs58101275	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Completion of the aide-memoire	361,501 European ancestry cases, 89,535 European ancestry controls	NA	14q32.33	NR	rs58101275-G	0.79	5E-9		0.96	[0.95, 0.98]	Affymetrix [39302896] (imputed)	N
1378	chr14	104008419	104008420	rs58101275	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Isoleucine)	16,596 European ancestry individuals	NA	14q32.33	TRMT61A	rs58101275-G	0.79	3E-8		0.09	[0.061-0.119] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1378	chr14	104011493	104011494	rs752268	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.33		rs752268-T	0.21	2E-22		9.76	z score increase	Affymetrix [9061022] (imputed)	N
1378	chr14	104011493	104011494	rs752268	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.33		rs752268-T	0.21	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
1378	chr14	104011493	104011494	rs752268	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.33	NR	rs752268-T	0.2106	5E-14				NR [9056863] (imputed)	N
1378	chr14	104011993	104011994	rs61996704	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.33	NR	rs61996704-A	NR	1E-8		5.705	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1378	chr14	104014934	104014935	rs942866	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	14q32.33	NR	rs942866-T	0.660640581159681	1E-11		0.006608857	[0.0047-0.0085] unit increase	NR [NR]	N
1378	chr14	104017792	104017793	rs12893668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	14q32.33	RP11-894P9.2	rs12893668-A	0.2862	7E-11		0.02594494	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	14q32.33	NR	rs10149470-G	NR	1E-10		1.0309278		NR [NR] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q32.33	BAG5, APOPT1	rs10149470-?		5E-13				NR [6786993] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	14q32.33		rs10149470-A	0.487	9E-9		0.049	[0.033-0.065] unit increase	Illumina [NR] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	14q32.33	NR	rs10149470-G	0.5131	7E-22		1.0204082	[1.02-1.02]	NR [8098588] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	14q32.33	BAG5, APOPT1	rs10149470-G	0.51	3E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	14q32.33	CKB, TRMT61A	rs10149470-A	0.486	4E-8		5.49	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	14q32.33	RNU7-160P	rs10149470-A	NR	5E-11		0.01967534	[0.014-0.026] unit decrease	Affymetrix [NR]	N
1378	chr14	104017952	104017953	rs10149470	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	14q32.33	RNU7-160P	rs10149470-?	NR	2E-9		5.982	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1378	chr14	104017952	104017953	rs10149470	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	14q32.33	RNU7-160P	rs10149470-?	NR	3E-9		5.951	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1378	chr14	104018104	104018105	rs10141157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q32.33		rs10141157-C	NR	3E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1378	chr14	104018104	104018105	rs10141157	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	14q32.33	NR	rs10141157-T	NR	6E-10		6.186	NR z score decrease	NR [NR]	N
1378	chr14	104018104	104018105	rs10141157	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	14q32.33	NR	rs10141157-T	0.4873	1E-11		0.028091298	[0.02-0.036] unit decrease	NR [NR]	N
1378	chr14	104018104	104018105	rs10141157	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	14q32.33	NR	rs10141157-T	0.4811	1E-9		0.074350074	[0.05-0.098] unit decrease	NR [NR]	N
1378	chr14	104018454	104018455	rs10129426	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	14q32.33	NR	rs10129426-G	0.454274	3E-11		0.04208807	[0.03-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1378	chr14	104018454	104018455	rs10129426	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	14q32.33		rs10129426-?	NR	4E-8				NR [7857346] (imputed)	N
1378	chr14	104018454	104018455	rs10129426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	14q32.33	Intergenic	rs10129426-A	0.5421	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr14	104018454	104018455	rs10129426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	14q32.33	Intergenic	rs10129426-A	0.5414	3E-13	(MTAG)	0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr14	104018454	104018455	rs10129426	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	14q32.33	Intergenic	rs10129426-A	0.5414	2E-11		0.0193	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1378	chr14	104018454	104018455	rs10129426	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.33	NR	rs10129426-A	NR	1E-13		7.413	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1378	chr14	104018650	104018651	rs7140558	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.33		rs7140558-?	NR	3E-16		0.0186528	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1378	chr14	104021140	104021141	rs4906335	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	14q32.33	BAG5	rs4906335-A	0.28	9E-16				Affymetrix, Illumina [at least 918921] (imputed)	N
1378	chr14	104029791	104029792	rs2296483	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	14q32.33	NR	rs2296483-A	0.638490296029707	6E-9		0.009993722	[0.0066-0.0134] unit increase	NR [NR]	N
1378	chr14	104029791	104029792	rs2296483	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	14q32.33	NR	rs2296483-A	0.638490296029707	1E-12		0.008480605	[0.0062-0.0108] unit increase	NR [NR]	N
1378	chr14	104046833	104046834	rs12887734	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	14q32.33	NR	rs12887734-T	0.2744	6E-14		0.08973196	[0.066-0.113] unit increase	NR [NR]	N
1378	chr14	104046833	104046834	rs12887734	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	14q32.33	NR	rs12887734-T	0.2744	2E-11		0.08054831	[0.057-0.104] unit increase	NR [NR]	N
1378	chr14	104046833	104046834	rs12887734	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	14q32.33	NR	rs12887734-?	NR	2E-13				Illumina [up to 5582932] (imputed)	N
1378	chr14	104046833	104046834	rs12887734	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q32.33	APOPT1	rs12887734-T	NR	4E-13	(EA)	1.0923	[1.07-1.12]	Illumina [6627481] (imputed)	N
1378	chr14	104046833	104046834	rs12887734	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	14q32.33	APOPT1	rs12887734-T	NR	1E-12		1.078	[1.06-1.1]	Illumina [6627481] (imputed)	N
1378	chr14	104046833	104046834	rs12887734	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q32.33	APOPT1, BAG5, CKB, KLC1, LINC00637, MARK3, PPP1R13B, TRMT61A, XRCC3, ZFYVE21	rs12887734-T		2E-12		1.08	[1.06-1.10]	Affymetrix, Illumina [NR]	N
1378	chr14	104046833	104046834	rs12887734	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q32.33	NR	rs12887734-T	NR	2E-13		1.09	[NR]	Illumina [7158791] (imputed)	N
1378	chr14	104046833	104046834	rs12887734	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	14q32.33	AL049840.1, APOPT1, BAG5, CKB, KLC1, PPP1R13B, TRMT61A, XRCC3, ZFYVE21	rs12887734-T	0.287	1E-13		1.088	[1.064-1.113]	Affymetrix, Illumina [9005918] (imputed)	N
1378	chr14	104050356	104050357	rs4906338	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4906338-?	NR	6E-14				NR [2625067]	N
1378	chr14	104050356	104050357	rs4906338	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs4906338-?	NR	1E-10				NR [2625067]	N
1378	chr14	104051816	104051817	rs60226654	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.33	NR	rs60226654-C	0.4798	8E-6	(EA)	0.0299	[0.017-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
1378	chr14	104052056	104052057	rs35229468	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	14q32.33	KLC1, APOPT1, ENSG00000256500	rs35229468-?	NR	2E-13		0.01667109	[0.012-0.021] unit decrease	NR [7306098]	N
1378	chr14	104054424	104054425	rs8008382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	14q32.33		rs8008382-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1378	chr14	104054424	104054425	rs8008382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	14q32.33		rs8008382-T	0.3009	4E-12		0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr14	104054424	104054425	rs8008382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	14q32.33	Intergenic	rs8008382-T	0.3009	3E-13	(MTAG)	0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr14	104056285	104056286	rs139135370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs139135370-T	0.03271	1E-18		0.474071	[0.37-0.58] unit increase	Illumina [7506463] (imputed)	N
1378	chr14	104056285	104056286	rs139135370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CUEDC2	5,365 Icelandic ancestry individuals	NA	14q32.33		rs139135370-T	0.03271	7E-12		0.366019	[0.26-0.47] unit decrease	Illumina [7506463] (imputed)	N
1378	chr14	104056285	104056286	rs139135370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPRV1	5,360 Icelandic ancestry individuals	NA	14q32.33		rs139135370-T	0.03271	6E-20		0.464191	[0.36-0.56] unit increase	Illumina [7506463] (imputed)	N
1379	chr14	104073099	104073100	rs2403200	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	14q32.33	COA8	rs2403200-T	0.654421	9E-26		0.00566031	[0.0046-0.0067] unit increase	Affymetrix [13995440] (imputed)	N
1379	chr14	104091114	104091115	rs4906349	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	14q32.33	NR	rs4906349-A	NR	3E-8		5.524	NR z score increase	NR [NR]	N
1379	chr14	104091114	104091115	rs4906349	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	14q32.33	NR	rs4906349-G	0.3108	5E-7		0.0064	[0.0039-0.0089] unit decrease	NR [7666894] (imputed)	N
1379	chr14	104093520	104093521	rs729437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	14q32.33	Intergenic	rs729437-T	0.6683	5E-9	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1379	chr14	104093520	104093521	rs729437	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	14q32.33	NR	rs729437-T	NR	4E-10		6.256	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1379	chr14	104096030	104096031	rs61637848	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	14q32.33	NR	rs61637848-?		3E-12				NR [8377093]	N
1379	chr14	104133529	104133530	rs151199076	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs151199076-A	0.12146	3E-8		0.2092	[0.14-0.28] unit increase	Illumina [18238174] (imputed)	N
1379	chr14	104146420	104146421	rs4900590	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	14q32.33	KLC1	rs4900590-T	0.324	3E-9		0.0234	[0.016-0.031] unit increase	Illumina [~ 250000] (imputed)	N
1379	chr14	104149474	104149475	rs709400	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	14q32.33	NA	rs709400-A	0.6214	6E-19		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1379	chr14	104149474	104149475	rs709400	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	14q32.33	NA	rs709400-A	0.6214	6E-19		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1379	chr14	104149474	104149475	rs709400	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	14q32.33	NR	rs709400-A	NR	3E-8		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1379	chr14	104149474	104149475	rs709400	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	14q32.33	KLC1	rs709400-G	0.4	2E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1379	chr14	104149474	104149475	rs709400	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	14q32.33	LINC00605, EIF5, SNORA28, MARK3, CKB, TRMT61A, APOPT1, BAG5, XRCC3, ZFYVE21, PPP1R13B, LINC00637, C14orf2, TDRD9, RD3L, ASPG, MIR203, MIR3545, KIF26A	rs709400-A	0.627911964308516	4E-9		0.016438087	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1379	chr14	104149474	104149475	rs709400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.33	KLC1	rs709400-A	0.635	1E-7		0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1379	chr14	104149474	104149475	rs709400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.33	KLC1	rs709400-A	0.63	1E-7	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1379	chr14	104149474	104149475	rs709400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	14q32.33	KLC1	rs709400-A	0.629	3E-6	(EA, women)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1379	chr14	104151399	104151400	rs35011804	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	14q32.33	NR	rs35011804-T	0.326	4E-10		0.010256	[0.0071-0.0135] unit increase	NR [9732723] (imputed)	N
1379	chr14	104154877	104154878	rs4900591	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	14q32.33	NR	rs4900591-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1379	chr14	104167563	104167564	rs861536	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	14q32.33	KLC1	rs861536-A	0.6654	3E-9		0.0213	[0.014-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1379	chr14	104167563	104167564	rs861536	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	14q32.33	KLC1	rs861536-A	0.621	2E-9		0.0238	[0.016-0.032] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1379	chr14	104180392	104180393	rs3212028	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	14q32.33		rs3212028-C	0.866	4E-8				Affymetrix [10369434] (imputed)	N
1379	chr14	104182997	104182998	rs861528	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.33		rs861528-?	NR	5E-17		0.0190658	[0.014-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1379	chr14	104184736	104184737	rs11846838	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	14q32.33	NR	rs11846838-A	0.327	5E-9		0.015177023	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1379	chr14	104184736	104184737	rs11846838	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	14q32.33	NR	rs11846838-A	0.327	3E-12		0.0163456	[0.012-0.021] unit increase	NR [9732723] (imputed)	N
1379	chr14	104194277	104194278	rs1535099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	14q32.33	ZFYVE21	rs1535099-T	0.592234	9E-10		0.013793512	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1379	chr14	104196606	104196607	rs12433109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	14q32.33		rs12433109-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1379	chr14	104198250	104198251	rs3742365	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	14q32.33		rs3742365-T	0.595	3E-14		0.016	[0.012-0.02] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1379	chr14	104198350	104198351	rs3742366	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.33	NR	rs3742366-C	0.346395	1E-22		0.0077572	[0.006-0.0095] unit increase	Affymetrix [16582909] (imputed)	N
1379	chr14	104198350	104198351	rs3742366	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q32.33	NR	rs3742366-C	0.34584099999999995	4E-17		0.00943885	[0.0071-0.0118] unit increase	Affymetrix [16582621] (imputed)	N
1379	chr14	104198350	104198351	rs3742366	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.33	NR	rs3742366-C	0.346395	2E-10		0.00569069	[0.0038-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1379	chr14	104198350	104198351	rs3742366	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q32.33	NR	rs3742366-C	0.34584099999999995	4E-14		0.00917614	[0.0066-0.0117] unit increase	Affymetrix [16582614] (imputed)	N
1379	chr14	104199579	104199580	rs8548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	14q32.33		rs8548-C	NR	7E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1380	chr14	104205122	104205123	rs17292804	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q32.33	APOPT1, BAG5, C14orf2, CKB, EIF5, KLC1, LINC00637, MARK3, PPP1R13B, RD3L, SNORA28, TDRD9, TRMT61A, XRCC3, ZFYVE21	rs17292804-A		6E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [NR]	N
1380	chr14	104214341	104214342	rs4906364	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	14q32.33	NR	rs4906364-?		2E-10				NR [8377093]	N
1380	chr14	104214341	104214342	rs4906364	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	14q32.33	PPP1R13B, ZFYVE21	rs4906364-?		3E-12				NR [6786993] (imputed)	N
1380	chr14	104214341	104214342	rs4906364	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q32.33	APOPT1, KLC1, XRCC3, ZFYVE21, PPP1R13B, LINC00637, C14orf2	rs4906364-G	0.32399999999999995	2E-6		1.0587612		NR [9372253] (imputed)	N
1380	chr14	104228840	104228841	rs7142769	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	14q32.33		rs7142769-?	NR	6E-11		0.0216	NR unit increase	NR [4425810] (imputed)	N
1380	chr14	104244582	104244583	rs12890837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	14q32.33		rs12890837-T	NR	1E-9		0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1380	chr14	104249509	104249510	rs78631521	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	14q32.33	PPP1R13B	rs78631521-A	0.0345	2E-6		0.0134	[0.0079-0.0189] unit increase	Affymetrix [~ 7740000] (imputed)	N
1380	chr14	104255568	104255569	rs10873538	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	14q32.33	NR	rs10873538-?	NR	6E-14		1.0731571	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
1380	chr14	104261722	104261723	rs722637	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	14q32.33	NR	rs722637-?		1E-10				NR [520857]	N
1380	chr14	104264661	104264662	rs8009147	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	14q32.33		rs8009147-?	NR	5E-9		0.02	NR unit increase	NR [4428082] (imputed)	N
1380	chr14	104264661	104264662	rs8009147	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	14q32.33	APOPT1, BAG5, KLC1, LINC00637, PPP1R13B, XRCC3, ZFYVE21	rs8009147-?		2E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1380	chr14	104272757	104272758	rs12879697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.33		rs12879697-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1380	chr14	104290673	104290674	rs67478160	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q32.33	NR	rs67478160-C	NR	6E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1380	chr14	104290812	104290813	rs12893623	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q32.33	PPP1R13B	rs12893623-A	0.6853	3E-9		0.0172	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1380	chr14	104307553	104307554	rs12879529	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	14q32.33	PPP1R13B	rs12879529-A	0.335	3E-14		0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1380	chr14	104314181	104314182	rs10083370	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	14q32.33	LINC00637, PPP1R13B, XRCC3, ZFYVE21, ASPG, C14orf2, RD3L, TDRD9	rs10083370-?	NR	3E-14		1.078	[1.06-1.1]	Illumina [8000000] (imputed)	N
1380	chr14	104316732	104316733	rs11160767	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	14q32.33	NR	rs11160767-A	0.5908	2E-8		0.011985002	[0.0078-0.0162] unit decrease	Affymetrix [10613246] (imputed)	N
1380	chr14	104322393	104322394	rs6576006	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q32.33	C14orf2	rs6576006-A	0.3405	2E-8		0.013974029	[0.0091-0.0189] unit increase	Affymetrix [11515109] (imputed)	N
1380	chr14	104327731	104327732	rs2006281	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	14q32.33	CTD-2134A5.4	rs2006281-C	0.4981	3E-8		0.0135	[0.0088-0.0182] unit increase	NR [NR]	N
1380	chr14	104332758	104332759	rs12891477	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	14q32.33	LINC00637, C14orf2	rs12891477-C		2E-9		0.971	[NR]	Affymetrix [up to 79000000] (imputed)	N
1380	chr14	104332758	104332759	rs12891477	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	14q32.33	NR	rs12891477-C	0.631191	3E-12		0.0139634	[0.01-0.018] unit decrease	Affymetrix [15000001]	N
1381	chr14	104355882	104355883	rs8008020	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	14q32.33	C14orf2	rs8008020-T	0.4175	1E-9		6.062	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1381	chr14	104355882	104355883	rs8008020	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	14q32.33	NR	rs8008020-T	0.4162	2E-8		5.632	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1381	chr14	104357181	104357182	rs1885073	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	14q32.33	NR	rs1885073-?	NR	2E-32				Affymetrix [NR]	N
1381	chr14	104357637	104357638	rs4144027	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	14q32.33	ASPG	rs4144027-T	0.6	1E-11	(asparagine)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1381	chr14	104393765	104393766	rs33984773	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	14q32.33	TDRD9	rs33984773-G		2E-8	(Asn)	0.15	[0.091-0.209] unit increase	Illumina [1288202] (imputed)	N
1381	chr14	104407242	104407243	rs35337422	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	14q32.33	NR	rs35337422-C	0.15	4E-8		0.37	[0.23-0.51] unit increase	Affymetrix [9231066] (imputed)	N
1381	chr14	104407242	104407243	rs35337422	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	14q32.33	NR	rs35337422-C	0.15	4E-8		0.37	[0.23-0.51] unit increase	Affymetrix [9231066] (imputed)	N
1381	chr14	104407242	104407243	rs35337422	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	14q32.33	ZNF839, CINP, TECPR2, ANKRD9, CDC42BPB, PPP1R13B, TDRD9, RD3L, ASPG	rs35337422-?		1E-20				Affymetrix, Illumina [NR] (imputed)	N
1381	chr14	104407242	104407243	rs35337422	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q32.33	RD3L	rs35337422-A	0.8552	2E-10		6.347	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1381	chr14	104407242	104407243	rs35337422	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	14q32.33	NR	rs35337422-A	0.8555	2E-8		0.1322	[0.086-0.178] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1382	chr14	104506456	104506457	rs72714919	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	14q32.33	TDRD9	rs72714919-?		3E-9				Affymetrix, Illumina [2374420] (imputed)	N
1382	chr14	104509075	104509076	rs11622475	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q32.33	NR	rs11622475-?	NR	2E-6	(addtive)			Affymetrix [NR]	N
1382	chr14	104509075	104509076	rs11622475	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	14q32.33	NR	rs11622475-C	0.70	8E-6		1.13	[0.89-1.44]	Affymetrix [469557]	N
1382	chr14	104511205	104511206	rs61997596	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	14q32.33	NR	rs61997596-A	0.191	4E-8		1.037	[1.02-1.05]	NR [5276842] (imputed)	N
1382	chr14	104536085	104536086	rs140633683	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs140633683-C	0.02679	4E-14		0.456025	[0.34-0.57] unit increase	Illumina [7506463] (imputed)	N
1382	chr14	104537679	104537680	rs112973353	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	14q32.33	NR	rs112973353-T	NR	1E-8		1.11	[NR]	Illumina [7158791] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free asparagine levels	1,338 Japanese ancestry individuals	665 Japanese ancestry individuals	14q32.33	ASPG	rs1744297-T	0.13	1E-74		0.81	[0.73-0.89] unit increase	Illumina [up to 1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-T		3E-107	(Asn)	0.77	[0.71-0.83] unit increase	Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		5E-6	(Thr)			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		9E-63	(Asn (adjusted for Gln))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		9E-24	(Met (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		9E-11	(Tyr (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		8E-56	(Asn (adjusted for Gly))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		8E-27	(Thr (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		5E-8	(Phe (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		5E-6	(Pro (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		3E-62	(Asn (adjusted for Ser))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-8	(Trp (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-8	(Ala (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-60	(Asn (adjusted for Phe))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-6	(Cit (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-57	(Asn (adjusted for Pro))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		2E-14	(Lys (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		1E-12	(Orn (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		1E-12	(His (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		1E-11	(Ser (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	14q32.33	ASPG	rs1744297-?		1E-11	(Gln (adjusted for Asn))			Illumina [1288202] (imputed)	N
1382	chr14	104568471	104568472	rs1744297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	14q32.33		rs1744297-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1382	chr14	104571053	104571054	rs8012505	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q32.33	ASPG	rs8012505-G	0.0994463	5E-69	(asparagine)	0.681	[0.6-0.76] unit increase	Illumina [13039987] (imputed)	N
1382	chr14	104571053	104571054	rs8012505	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q32.33	ASPG	rs8012505-G	0.0994463	3E-15	(N-acetylasparagine)	0.302	[0.23-0.38] unit increase	Illumina [13039987] (imputed)	N
1382	chr14	104571819	104571820	rs2282377	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	14q32.33	ASPG	rs2282377-G	NR	1E-11	(Asparagine)	0.426586	[0.3-0.55] unit increase	Illumina [up to 9281895] (imputed)	N
1382	chr14	104576447	104576448	rs34362765	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q32.33	ASPG	rs34362765-G	0.50484	9E-30	(asparagine)	0.255	[0.21-0.3] unit increase	Illumina [13039987] (imputed)	N
1382	chr14	104581759	104581760	rs750062	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.33	NR	rs750062-G	0.805959	4E-11		0.00690833	[0.0048-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1382	chr14	104582385	104582386	rs61997624	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	14q32.33	MIR203	rs61997624-C		2E-91	(Asn)	0.73	[0.67-0.79] unit increase	Illumina [1288202] (imputed)	N
1382	chr14	104582385	104582386	rs61997624	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	14q32.33	MIR203	rs61997624-C	0.13	3E-45	(Asn)	0.78	[0.68-0.88] unit increase	Illumina [1288202] (imputed)	N
1383	chr14	104599095	104599096	rs10140740	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	14q32.33		rs10140740-G	0.826	3E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1383	chr14	104602176	104602177	rs12587001	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	14q32.33	KIF26A	rs12587001-C		5E-74	(Asn)	0.65	[0.59-0.71] unit increase	Illumina [1288202] (imputed)	N
1383	chr14	104602176	104602177	rs12587001	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	14q32.33	KIF26A	rs12587001-C	0.13	2E-37	(Asn)	0.69	[0.59-0.79] unit increase	Illumina [1288202] (imputed)	N
1383	chr14	104609796	104609797	rs35219418	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	14q32.33	KIF26A	rs35219418-A	0.7578	1E-8		0.015633611	[0.01-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1383	chr14	104609796	104609797	rs35219418	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	14q32.33	NR	rs35219418-T	0.24	9E-13		0.00929318	[0.0067-0.0118] unit decrease	NR [9732723] (imputed)	N
1383	chr14	104610137	104610138	rs11625650	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	14q32.33	NR	rs11625650-A	0.233	2E-11		0.010895	[0.0077-0.0141] unit decrease	NR [~ 9732723] (imputed)	N
1383	chr14	104610137	104610138	rs11625650	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	14q32.33	NR	rs11625650-A	0.233	3E-8		0.009568091	[0.0062-0.0129] unit decrease	NR [~ 10000000] (imputed)	N
1383	chr14	104620192	104620193	rs34161718	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	14q32.33	KIF26A	rs34161718-T	0.2416	3E-8		0.016667467	[0.011-0.023] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1383	chr14	104620192	104620193	rs34161718	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	14q32.33	KIF26A	rs34161718-C	0.7583	1E-9		0.1319	[0.09-0.174] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1383	chr14	104644775	104644776	rs2497296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.33	KIF26A	rs2497296-C	0.677389	2E-16		0.020961687	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1383	chr14	104644775	104644776	rs2497296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.33	KIF26A	rs2497296-C	0.677378	5E-14		0.019136224	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1383	chr14	104644775	104644776	rs2497296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs2497296-C	0.707571	7E-18				Affymetrix, Illumina [24588908] (imputed)	N
1383	chr14	104644775	104644776	rs2497296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.33	NR	rs2497296-C	0.680539	4E-20		0.020164	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1383	chr14	104674807	104674808	rs113236457	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	14q32.33	KIF26A	rs113236457-?	NR	5E-6				Illumina [NR] (imputed)	N
1383	chr14	104674807	104674808	rs113236457	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	14q32.33	KIF26A	rs113236457-?	NR	9E-7		3.0	[1.75-5.11]	Illumina [NR] (imputed)	N
1384	chr14	104753385	104753386	rs34745104	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	14q32.33	intergenic	rs34745104-?	NR	9E-6		0.212	[0.087-0.337] unit decrease	Illumina [at least 13000000] (imputed)	N
1384	chr14	104775851	104775852	rs28405640	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	14q32.33	C14orf144	rs28405640-?		2E-6		1.23	[1.12-1.34]	Illumina [5352724] (imputed)	N
1384	chr14	104791891	104791892	rs62639548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	14q32.33		rs62639548-A	0.576677	6E-11		0.01642282	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1384	chr14	104791891	104791892	rs62639548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.33		rs62639548-A	0.576657	6E-9		0.014561316	[0.0096-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
1384	chr14	104798513	104798514	rs77578883	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs77578883-G	0.06134	4E-8		0.283	[0.18-0.38] unit decrease	Illumina [18238197] (imputed)	N
1384	chr14	104810468	104810469	rs4496060	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	14q32.33	TMEM179	rs4496060-C	0.43	9E-6	(African American)	0.18	0.1-0.27 unit increase	Illumina [NR] (imputed)	N
1384	chr14	104821937	104821938	rs59193267	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	14q32.33		rs59193267-?	NR	6E-6		0.3024		Illumina [5932083] (imputed)	N
1384	chr14	104827324	104827325	rs11849430	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	14q32.33		rs11849430-?	NR	6E-6		0.3024		Illumina [5932083] (imputed)	N
1384	chr14	104828698	104828699	rs11846347	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	14q32.33		rs11846347-?	NR	3E-6		0.2909		Illumina [5932083] (imputed)	N
1384	chr14	104830599	104830600	rs4575477	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	14q32.33		rs4575477-?	NR	6E-6		0.3028		Illumina [5932083] (imputed)	N
1384	chr14	104841308	104841309	rs4265747	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	14q32.33	RP11-260M19.1	rs4265747-T	0.7856	5E-6		0.0663	[0.038-0.095] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1385	chr14	104912875	104912876	rs7150255	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	14q32.33	NR	rs7150255-?		3E-6	(genus_Megasphaera)	0.5312939	[0.32-0.75] unit decrease	Affymetrix [212153]	N
1385	chr14	104951399	104951400	rs189300566	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Holdemania massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	14q32.33		rs189300566-C	0.0140203	8E-9		0.303158	[0.2-0.41] unit increase	Illumina [7980478] (imputed)	N
1385	chr14	104979485	104979486	rs4264325	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	14q32.33	KIF26A, C14orf180	rs4264325-G	0.973	2E-8				NR [509413]	N
1386	chr14	105007595	105007596	rs8009299	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	14q32.33	NR	rs8009299-?	NR	4E-10	(right accumbens area)			NR [9227495] (imputed)	N
1386	chr14	105092030	105092031	rs10147900	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	14q32.33	C14orf180, TMEM179	rs10147900-T	0.138	2E-6		1.10054	[1.06-1.14]	NR [9372253] (imputed)	N
1386	chr14	105092030	105092031	rs10147900	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	14q32.33	C14orf180, TMEM179	rs10147900-T	0.138	2E-7		1.16137		NR [9372253] (imputed)	N
1386	chr14	105103757	105103758	rs116039120	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	14q32.33	TMEM179, MIR4710	rs116039120-C	0.019935006	5E-6		1.6098583	[1.311361149-1.97630046]	Illumina [10439017] (imputed)	N
1387	chr14	105136780	105136781	rs8020981	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	14q32.33	NR	rs8020981-?	NR	7E-6	(AA)	13.71	[11.59-15.83]	Illumina [905956]	N
1387	chr14	105212261	105212261	rs10623258	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	14q32.33		rs10623258-CTT	NR	8E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
1387	chr14	105212261	105212261	rs10623258	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	14q32.33	ADSSL1	rs10623258-CTT	0.45	2E-8	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1387	chr14	105223524	105223525	rs12590163	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	14q32.33	SIVA1	rs12590163-C	0.441724143780795	2E-16		0.0387	[0.03-0.048] SD decrease	Illumina [22400000] (imputed)	N
1387	chr14	105243219	105243220	rs2498796	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	14q32.33	AKT1, SIVA1	rs2498796-A	0.3	4E-8		1.1363636	[1.09-1.18]	Illumina [up to 2300000] (imputed)	N
1387	chr14	105243219	105243220	rs2498796	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	14q32.33	AKT1, SIVA1	rs2498796-A	0.3	4E-8		1.1235955	[1.08-1.18]	Illumina [up to 2300000] (imputed)	N
1388	chr14	105253580	105253581	rs10136000	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	14q32.33	AKT1	rs10136000-A	0.283	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1388	chr14	105256186	105256187	rs61759760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.33		rs61759760-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1388	chr14	105258436	105258437	rs2494747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	14q32.33		rs2494747-G	0.384483	3E-12		0.0280929	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1388	chr14	105258436	105258437	rs2494747	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	14q32.33	NR	rs2494747-T	0.5454	3E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	3E-8		0.0216526	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	4E-9		0.0234584	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	2E-8		0.0221594	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	4E-8		0.0210578	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	3E-8		0.0217086	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	14q32.33		rs2494748-C	0.383765	2E-8		0.0219815	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	14q32.33		rs2494748-T	NR	2E-31		0.0254	[0.021-0.03] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q32.33	AKT1	rs2494748-T	0.61635	7E-9		0.013204456	[0.0087-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	14q32.33	AKT1	rs2494748-C	0.383559	5E-57		0.0322415	[0.028-0.036] unit increase	Affymetrix [NR] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.33		rs2494748-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1388	chr14	105258891	105258892	rs2494748	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	14q32.33	AKT1	rs2494748-T	0.5435	3E-26		0.0303	[0.025-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1388	chr14	105262367	105262368	rs2498786	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	14q32.33	AKT1	rs2498786-C	0.384022	4E-38		0.0253952	[0.022-0.029] unit increase	Affymetrix [NR] (imputed)	N
1388	chr14	105262367	105262368	rs2498786	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.33	NR	rs2498786-C	0.383984	2E-32		0.00984518	[0.0082-0.0115] unit increase	Affymetrix [16582909] (imputed)	N
1388	chr14	105262367	105262368	rs2498786	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	14q32.33	NR	rs2498786-C	0.384603	6E-19		0.0110479	[0.0086-0.0135] unit increase	Affymetrix [16585854] (imputed)	N
1388	chr14	105262367	105262368	rs2498786	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.33	NR	rs2498786-C	0.383984	1E-30		0.0108833	[0.009-0.0128] unit increase	Affymetrix [16582965] (imputed)	N
1388	chr14	105262367	105262368	rs2498786	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	14q32.33	NR	rs2498786-C	0.384603	9E-20		0.0129537	[0.01-0.016] unit increase	Affymetrix [16585866] (imputed)	N
1388	chr14	105268103	105268104	rs10141867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q32.33	NR	rs10141867-A	NR	5E-17		0.0232	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1388	chr14	105268700	105268701	rs61734768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	14q32.33	NR	rs61734768-A	NR	7E-10		0.0618	[0.042-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1388	chr14	105268700	105268701	rs61734768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q32.33	NR	rs61734768-A	NR	6E-14		0.0753	[0.056-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	14q32.33	NR	rs45490496-A	0.386594	3E-11		0.0207827	[0.015-0.027] unit increase	Affymetrix [16577313] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	14q32.33	NR	rs45490496-A	0.386942	2E-14		0.00861767	[0.0063-0.011] unit increase	Affymetrix [16582621] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	14q32.33	NR	rs45490496-A	0.386942	7E-13		0.00874482	[0.0063-0.0112] unit increase	Affymetrix [16582614] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	7E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	3E-19				Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	3E-20				Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	1E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	6E-9	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	2E-12		0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	14q32.33	ZBTB42, LINC00638	rs45490496-T	NR	2E-9		0.006349	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1388	chr14	105272677	105272678	rs45490496	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	14q32.33	ZBTB42, AKT1	rs45490496-A	0.39	8E-9		0.038	[0.024-0.052] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1388	chr14	105277143	105277144	rs4983558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	14q32.33	NR	rs4983558-T	NR	8E-11		0.0258	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1388	chr14	105277143	105277144	rs4983558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	14q32.33	NR	rs4983558-T	NR	3E-10		0.0251	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1388	chr14	105277208	105277209	rs4983559	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	14q32.33	ZBTB42, AKT1	rs4983559-A	0.623	3E-8	(Trans-ethnic initial)	0.0197	[0.013-0.027] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1388	chr14	105277208	105277209	rs4983559	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	14q32.33	ZBTB42, AKT1	rs4983559-G	0.4	1E-8		0.02	[NR] unit increase	NR [NR] (imputed)	N
1388	chr14	105281924	105281925	rs114194742	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	14q32.33	MGC23270	rs114194742-T	0.01	3E-6		14.52	[8.46-20.58] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1388	chr14	105283872	105283873	rs76751100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	14q32.33		rs76751100-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1388	chr14	105346906	105346907	rs2841233	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.33	NR	rs2841233-C	0.642908958091841	7E-6	(IGP30)	0.1475	[0.083-0.212] unit decrease	Illumina [~ 2500000] (imputed)	N
1388	chr14	105349387	105349388	rs2028414	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	14q32.33	NR	rs2028414-C	0.635674106107891	8E-6	(IGP33)	0.1399	[0.079-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
1389	chr14	105385240	105385241	rs10138660	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAVS	5,366 Icelandic ancestry individuals	NA	14q32.33		rs10138660-T	0.1264	5E-13		0.206692	[0.15-0.26] unit increase	Illumina [7506463] (imputed)	N
1389	chr14	105385351	105385352	rs2819438	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	14q32.33	MGC23270, RPS26P49, RPS2P4, KIAA0284, PLD4, AHNAK2, C14orf79, CDCA4	rs2819438-A	0	7E-9		0.8	[0.53-1.07] unit decrease	Illumina [8248960] (imputed)	N
1389	chr14	105385351	105385352	rs2819438	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	14q32.33	RPS26P49, MGC23270, RPS2P4, KIAA0284, PLD4, AHNAK2, C14orf79, CDCA4	rs2819438-A	0.13	7E-6		0.4	[0.22-0.58] unit decrease	Illumina [8454470] (imputed)	N
1389	chr14	105386148	105386149	rs2841269	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	14q32.33	PLD4	rs2841269-?		2E-16		0.8	[0.76-0.85]	Illumina [NR] (imputed)	N
1389	chr14	105388181	105388182	rs2841275	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	14q32.33		rs2841275-A	NR	2E-19		0.85	[0.82-0.88]	NR [13810676] (imputed)	N
1389	chr14	105391004	105391005	rs2841277	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	14q32.33	PLD4	rs2841277-T	0.69	2E-14		1.15	[1.11-1.19]	Affymetrix, Illumina [1948139]	N
1389	chr14	105392836	105392837	rs2582532	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q32.33	PLD4, AHNAK2	rs2582532-T	NR	7E-6		0.121451	[0.026-0.217] unit decrease	Illumina [8380626] (imputed)	N
1389	chr14	105392836	105392837	rs2582532	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	14q32.33	PLD4, AHNAK2	rs2582532-T	0.27	4E-6	(East Asian)	0.14638	[0.084-0.209] unit decrease	Illumina [8380626] (imputed)	N
1389	chr14	105392836	105392837	rs2582532	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q32.33	AHNAK2, PLD4	rs2582532-C	0.86	3E-7		1.17	[1.10-1.24]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1389	chr14	105392836	105392837	rs2582532	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	14q32.33	AHNAK2, PLD4	rs2582532-C	0.73	5E-8	(East Asian)	1.18	[1.11-1.25]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1389	chr14	105404383	105404384	rs1048257	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	14q32.33	AHNAK2	rs1048257-?	NR	9E-7		1.2195122	[1.12-1.32]	Illumina [NR]	N
1389	chr14	105412258	105412259	rs2819426	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	14q32.33	AHNAK2	rs2819426-C	0.331	3E-30		0.824	[0.79-0.86]	Illumina [11270530] (imputed)	N
1389	chr14	105417580	105417581	rs141283979	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	14q32.33	NR	rs141283979-C		9E-6		0.1833	[0.1-0.26] SD units decrease	NR [10700000] (imputed)	N
1389	chr14	105440005	105440006	rs8023038	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RLN1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs8023038-G	0.3513	5E-8		0.109742	[0.07-0.149] unit increase	Illumina [7506463] (imputed)	N
1389	chr14	105469367	105469368	rs61996057	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	14q32.33	NR	rs61996057-?	NR	8E-8		0.49	[0.38-0.63]	Illumina [539000] (imputed)	N
1389	chr14	105469591	105469592	rs149534442	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FXYD4	5,365 Icelandic ancestry individuals	NA	14q32.33		rs149534442-C	0.2904	4E-14		0.157967	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1389	chr14	105482351	105482352	rs11160832	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF165	5,364 Icelandic ancestry individuals	NA	14q32.33		rs11160832-G	0.306	2E-7		0.104872	[0.065-0.145] unit increase	Illumina [7506463] (imputed)	N
1389	chr14	105494402	105494403	rs117536281	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	14q32.33	CDCA4	rs117536281-G	0.034199	3E-6		0.084996	[0.049-0.121] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1389	chr14	105505002	105505003	rs7140920	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs7140920-T	0.3255	4E-9		0.12093	[0.081-0.161] unit decrease	Illumina [7506463] (imputed)	N
1390	chr14	105563059	105563060	rs56256371	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	14q32.33	NR	rs56256371-C	0.418483	1E-8		0.0181085	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
1390	chr14	105583136	105583137	rs59536268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	14q32.33		rs59536268-C	NR	3E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1390	chr14	105595817	105595818	rs2056860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	14q32.33	NR	rs2056860-C	0.772779	2E-10		0.01406	[0.0097-0.0184] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1390	chr14	105600663	105600664	rs10137527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.33		rs10137527-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1390	chr14	105603414	105603415	rs1022431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.33	JAG2	rs1022431-A	0.105572	5E-9		0.021121524	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1390	chr14	105609334	105609335	rs10149229	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	14q32.33	JAG2, NUDT14	rs10149229-?		1E-11				NR [7428630] (imputed)	N
1390	chr14	105614973	105614974	rs2242635	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	14q32.33		rs2242635-T	0.34	4E-16		8.14	z score increase	Affymetrix [9061022] (imputed)	N
1390	chr14	105614973	105614974	rs2242635	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	14q32.33	NR	rs2242635-T	0.3575	1E-17				NR [9056863] (imputed)	N
1390	chr14	105615020	105615021	rs75980785	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	226 male European ancestry cases, 7,315 male European ancestry controls	NA	14q32.33		rs75980785-?	NR	8E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
1390	chr14	105615025	105615026	rs2242634	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	14q32.33	NR	rs2242634-A	0.3566	5E-12				NR [9056863] (imputed)	N
1390	chr14	105623260	105623261	rs3784240	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	14q32.33	JAG2	rs3784240-A	NR	6E-8		5.415	[NR] unit increase	Illumina [632375]	N
1390	chr14	105623511	105623512	rs2072674	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	14q32.33		rs2072674-T	0.35	3E-24		10.15	z score increase	Affymetrix [9061022] (imputed)	N
1390	chr14	105629946	105629947	rs3784239	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	14q32.33		rs3784239-?	NR	6E-12				NR [9705931] (imputed)	N
1390	chr14	105629986	105629987	rs3784238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	14q32.33		rs3784238-A	NR	1E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1390	chr14	105630464	105630465	rs2239285	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	14q32.33		rs2239285-G	0.35	1E-14		7.72	z score increase	Affymetrix [9061022] (imputed)	N
1390	chr14	105633543	105633544	rs4983589	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	14q32.33	BANK1, SLC39A8	rs4983589-?		4E-8				NR [7428630] (imputed)	N
1390	chr14	105637155	105637156	rs3784234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	14q32.33		rs3784234-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1390	chr14	105638930	105638931	rs3825761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs3825761-C	0.61884	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1390	chr14	105638930	105638931	rs3825761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs3825761-C	0.617881	3E-14				Affymetrix, Illumina [23114412] (imputed)	N
1390	chr14	105639040	105639041	rs7151594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	14q32.33		rs7151594-A	NR	2E-12		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1390	chr14	105640075	105640076	rs12894531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs12894531-A	0.491622	3E-11		0.014990981	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105644420	105644421	rs11625865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs11625865-A	0.610151	5E-18		0.019756582	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105644420	105644421	rs11625865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs11625865-A	0.610145	6E-19		0.020308107	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105644420	105644421	rs11625865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	14q32.33	NR	rs11625865-A	0.61034	1E-13		0.015284	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1391	chr14	105646178	105646179	rs4983590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs4983590-A	0.609033	5E-12		0.015666464	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105646178	105646179	rs4983590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs4983590-A	0.609145	5E-16		0.018661357	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105646178	105646179	rs4983590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs4983590-A	0.60914	1E-16		0.019086149	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105646178	105646179	rs4983590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	14q32.33	RP11-44N21.4, NUDT14	rs4983590-A	0.609103	1E-12		0.016234728	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105646178	105646179	rs4983590	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	14q32.33	NR	rs4983590-A	0.610202	5E-13		0.014382	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VCY	5,365 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	1E-11		0.307571	[0.22-0.4] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	7E-29		0.504382	[0.42-0.59] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	8E-33		0.539651	[0.45-0.63] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	9E-29		0.502756	[0.41-0.59] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	4E-24		0.45783	[0.37-0.55] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	5E-34		0.54882	[0.46-0.64] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105662870	105662871	rs147878777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs147878777-T	0.04712	8E-18		0.390751	[0.3-0.48] unit increase	Illumina [7506463] (imputed)	N
1391	chr14	105665477	105665478	rs61996162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs61996162-T	NR	3E-12		0.035	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1391	chr14	105665477	105665478	rs61996162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs61996162-T	NR	3E-21		0.0473	[0.037-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1391	chr14	105688081	105688082	rs28406206	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	14q32.33	BRF1	rs28406206-?	NR	3E-6				Illumina [9650000] (imputed)	N
1391	chr14	105707173	105707174	rs1967639	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	14q32.33	NR	rs1967639-A	0.841721	9E-11		0.036939	[0.026-0.048] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1391	chr14	105708288	105708289	rs2816648	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	14q32.33	BRF1	rs2816648-?	NR	4E-8		0.03488	[0.022-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1391	chr14	105709605	105709606	rs28588570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	14q32.33		rs28588570-T	NR	7E-18		0.0201	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1391	chr14	105709605	105709606	rs28588570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	14q32.33		rs28588570-T	NR	2E-15		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1391	chr14	105724557	105724558	rs58528939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs58528939-G	0.277191	4E-17				Affymetrix, Illumina [24332387] (imputed)	N
1391	chr14	105728196	105728197	rs76752037	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	14q32.33	NR	rs76752037-?	NR	5E-6	(Native Hawaiian)	0.826	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1391	chr14	105729791	105729792	rs3000073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	14q32.33	NR	rs3000073-A	0.300781	1E-15		0.016851	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1391	chr14	105729791	105729792	rs3000073	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	14q32.33	BRF1	rs3000073-G	NR	3E-11		0.007	[0.005-0.009] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1391	chr14	105731405	105731406	rs200932296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs200932296-T	0.27517	2E-28				Affymetrix, Illumina [24246363] (imputed)	N
1391	chr14	105731405	105731406	rs200932296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs200932296-T	0.273789	1E-16				Affymetrix, Illumina [20825802] (imputed)	N
1391	chr14	105752403	105752404	rs3825762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	14q32.33	BRF1	rs3825762-C	0.300561	2E-14		0.018481955	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105752403	105752404	rs3825762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	14q32.33		rs3825762-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1391	chr14	105754531	105754532	rs11850055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	14q32.33		rs11850055-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1391	chr14	105755159	105755160	rs28818248	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	14q32.33		rs28818248-C	0.729	2E-19				Affymetrix [10369434] (imputed)	N
1391	chr14	105756484	105756485	rs8022526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs8022526-G	0.301617	1E-63				Affymetrix, Illumina [24588908] (imputed)	N
1391	chr14	105756484	105756485	rs8022526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	14q32.33	NR	rs8022526-G	0.320478	3E-55		0.031362	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1391	chr14	105756484	105756485	rs8022526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	14q32.33	NR	rs8022526-A	0.683341	8E-107		0.045619	[0.042-0.05] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1391	chr14	105757391	105757392	rs7146643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	14q32.33	BRF1	rs7146643-C	0.314652	3E-43		0.03351824	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1391	chr14	105757391	105757392	rs7146643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	14q32.33	BRF1	rs7146643-C	0.31466	4E-80		0.045936767	[0.041-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105757391	105757392	rs7146643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	14q32.33	NR	rs7146643-T	0.684078	8E-106				Affymetrix, Illumina [17210439] (imputed)	N
1391	chr14	105757565	105757566	rs7146012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	14q32.33		rs7146012-A	NR	2E-51		0.0337	[0.029-0.038] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1391	chr14	105758216	105758217	rs112790992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	14q32.33	BRF1	rs112790992-C	0.3152	1E-14		0.03036296	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1391	chr14	105758963	105758964	rs4555082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	14q32.33	BRF1	rs4555082-T	0.3112	3E-9		0.0230355	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1391	chr14	105758963	105758964	rs4555082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	14q32.33	BRF1	rs4555082-T	0.3112	2E-28		0.04331921	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	14q32.33		rs7149013-C	NR	2E-16		0.0164	[0.012-0.02] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	14q32.33	BRF1	rs7149013-C	0.294344	5E-15		0.019023992	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	14q32.33	BRF1	rs7149013-C	0.2944	7E-29		0.027414078	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	14q32.33	BRF1	rs7149013-C	0.294401	5E-15		0.019379932	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	14q32.33	BRF1	rs7149013-C	0.294325	9E-22		0.021798	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	14q32.33	NR	rs7149013-C	0.294405	4E-17		0.017133	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1391	chr14	105759839	105759840	rs7149013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	14q32.33	NR	rs7149013-C	0.294394	1E-26		0.021433	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1391	chr14	105760429	105760430	rs7154463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	14q32.33		rs7154463-C	0.204338	2E-11		0.0321995	[0.023-0.042] unit increase	Illumina [13478928] (imputed)	N
1392	chr14	105816434	105816435	rs139712292	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RLN1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs139712292-A	0.03554	4E-20		0.478533	[0.38-0.58] unit decrease	Illumina [7506463] (imputed)	N
1392	chr14	105816434	105816435	rs139712292	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRG1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs139712292-A	0.03554	7E-17		0.433035	[0.33-0.53] unit decrease	Illumina [7506463] (imputed)	N
1392	chr14	105873143	105873144	rs6576086	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	14q32.33	LOC647310	rs6576086-?	NR	4E-7		7.698	[4.88-10.52] unit decrease	Illumina [498648]	N
1392	chr14	105873143	105873144	rs6576086	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	14q32.33	LOC64710	rs6576086-?	NR	3E-7		21.63	[13.82-29.44] unit decrease	Illumina [498648]	N
1392	chr14	105873143	105873144	rs6576086	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	14q32.33	LOC647310	rs6576086-?	NR	6E-7		4.738	[2.98-6.5] unit decrease	Illumina [498648]	N
1392	chr14	105877056	105877057	rs56112295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	14q32.33	NR	rs56112295-T	0.22607200000000005	2E-10		0.00620451	[0.0041-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
1392	chr14	105877056	105877057	rs56112295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	14q32.33	NR	rs56112295-T	0.22607200000000005	3E-7		0.00529896	[0.003-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1392	chr14	105887286	105887287	rs149389111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREML4	5,366 Icelandic ancestry individuals	NA	14q32.33		rs149389111-T	0.03014	4E-17		0.46501	[0.36-0.57] unit decrease	Illumina [7506463] (imputed)	N
1392	chr14	105895330	105895331	rs6576092	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUSD2	5,364 Icelandic ancestry individuals	NA	14q32.33		rs6576092-G	0.1726	4E-38		0.318889	[0.27-0.37] unit increase	Illumina [7506463] (imputed)	N
1392	chr14	105895330	105895331	rs6576092	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCNC	5,367 Icelandic ancestry individuals	NA	14q32.33		rs6576092-G	0.1726	2E-13		0.184716	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
1392	chr14	105899666	105899667	rs7144207	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEND1	5,362 Icelandic ancestry individuals	NA	14q32.33		rs7144207-G	0.1733	1E-12		0.174491	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105912689	105912690	rs75724454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs75724454-C	NR	2E-15		0.0399	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UQCC3	5,366 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	3E-24		0.261849	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-90		0.510168	[0.46-0.56] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-107		0.554195	[0.5-0.6] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRB4	5,361 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	6E-13		0.181817	[0.13-0.23] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPP1R14B	5,365 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	3E-17		0.217451	[0.17-0.27] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NGFR	5,357 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-14		0.192239	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	1E-82		0.488725	[0.44-0.54] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GC	5,368 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	5E-72		0.458111	[0.41-0.51] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FXYD4	5,365 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	1E-60		0.418179	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FBN3	5,360 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	3E-45		0.348877	[0.3-0.4] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CUEDC2	5,365 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	5E-33		0.306574	[0.26-0.36] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL9A2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	3E-17		0.220873	[0.17-0.27] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD84	5,367 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-34		0.316709	[0.27-0.37] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf226	5,365 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-40		0.330689	[0.28-0.38] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	1E-71		0.452262	[0.4-0.5] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPRV1	5,360 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	7E-70		0.4252	[0.38-0.47] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105917815	105917816	rs80324969	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMELX	5,361 Icelandic ancestry individuals	NA	14q32.33		rs80324969-C	0.1591	2E-15		0.203247	[0.15-0.25] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105925299	105925300	rs112766772	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	14q32.33	MTA1	rs112766772-T	0.770379	4E-14		0.0168721	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
1393	chr14	105930405	105930406	rs4983413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs4983413-A	NR	5E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr14	105931315	105931318	rs67940422	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	14q32.33	NR	rs67940422-?	NR	7E-6		0.00466	[0.0026-0.0067] unit decrease	Affymetrix [9658292] (imputed)	N
1393	chr14	105954704	105954705	rs55633823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	14q32.33		rs55633823-T	NR	5E-15		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1393	chr14	105954704	105954705	rs55633823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	14q32.33	CRIP1	rs55633823-T	0.251477	7E-10		0.015884245	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1393	chr14	105954704	105954705	rs55633823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	14q32.33		rs55633823-?	NR	4E-22				NR [~ 8900000] (imputed)	N
1393	chr14	105954704	105954705	rs55633823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	14q32.33		rs55633823-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1393	chr14	105954704	105954705	rs55633823	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	14q32.33		rs55633823-?	NR	3E-14		0.0172207	[0.012-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1393	chr14	105956385	105956386	rs765583909	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.33	C14orf80	rs765583909-A	0.0015	5E-6		0.66	NR SD units increase	Illumina [21568490] (imputed)	N
1393	chr14	105968584	105968585	rs75153054	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	14q32.33	NR	rs75153054-C	0.2474	2E-11		0.001828	[0.0013-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
1393	chr14	105969060	105969061	rs35471125	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF165	5,364 Icelandic ancestry individuals	NA	14q32.33		rs35471125-T	0.2339	4E-21		0.207201	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105970175	105970176	rs8013827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs8013827-G	NR	6E-18		0.0246	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1393	chr14	105970175	105970176	rs8013827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs8013827-G	NR	1E-25		0.0299	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr14	105970175	105970176	rs8013827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs8013827-G	NR	2E-70		0.0506	[0.045-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1393	chr14	105970175	105970176	rs8013827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	14q32.33	NR	rs8013827-G	NR	4E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr14	105977149	105977150	rs8014713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PILRA	5,365 Icelandic ancestry individuals	NA	14q32.33		rs8014713-C	0.2326	4E-36		0.278924	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105977149	105977150	rs8014713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB131	5,366 Icelandic ancestry individuals	NA	14q32.33		rs8014713-C	0.2326	7E-18		0.192957	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105977149	105977150	rs8014713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTBS	5,359 Icelandic ancestry individuals	NA	14q32.33		rs8014713-C	0.2326	2E-27		0.236524	[0.19-0.28] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105983095	105983096	rs58087925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	14q32.33		rs58087925-T	NR	3E-13		0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1393	chr14	105983095	105983096	rs58087925	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs58087925-T	0.22	4E-19				Illumina [NR]	N
1393	chr14	105989598	105989599	rs35590487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF11	5,360 Icelandic ancestry individuals	NA	14q32.33		rs35590487-T	0.2309	3E-12		0.155056	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105989598	105989599	rs35590487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAVS	5,366 Icelandic ancestry individuals	NA	14q32.33		rs35590487-T	0.2309	6E-23		0.22034	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105989598	105989599	rs35590487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL4	5,360 Icelandic ancestry individuals	NA	14q32.33		rs35590487-T	0.2309	3E-22		0.214175	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105989598	105989599	rs35590487	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL1	5,345 Icelandic ancestry individuals	NA	14q32.33		rs35590487-T	0.2309	5E-20		0.193091	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105989598	105989599	rs35590487	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs35590487-T	0.23	2E-12				Illumina [NR]	N
1393	chr14	105989598	105989599	rs35590487	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monosialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs35590487-T	0.23	1E-12				Illumina [NR]	N
1393	chr14	105989598	105989599	rs35590487	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs35590487-T	0.23	4E-17				Illumina [NR]	N
1393	chr14	105989598	105989599	rs35590487	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs35590487-T	0.23	3E-18				Illumina [NR]	N
1393	chr14	105989598	105989599	rs35590487	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs35590487-T	0.23	6E-17				Illumina [NR]	N
1393	chr14	105990619	105990620	rs8013055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGB1C2	5,363 Icelandic ancestry individuals	NA	14q32.33		rs8013055-A	0.231	1E-29		0.249639	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105990619	105990620	rs8013055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISM2	5,360 Icelandic ancestry individuals	NA	14q32.33		rs8013055-A	0.231	8E-15		0.172746	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105990619	105990620	rs8013055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPHB5	5,359 Icelandic ancestry individuals	NA	14q32.33		rs8013055-A	0.231	1E-18		0.195286	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105990619	105990620	rs8013055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs8013055-A	0.231	2E-39		0.297091	[0.25-0.34] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105990619	105990620	rs8013055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMBN	5,361 Icelandic ancestry individuals	NA	14q32.33		rs8013055-A	0.231	3E-21		0.207878	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105990619	105990620	rs8013055	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	14q32.33	IGH	rs8013055-A	0.22	1E-12				Illumina [NR]	N
1393	chr14	105992182	105992183	rs11624007	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs11624007-C	0.2334	2E-23		0.225944	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREML4	5,366 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	1E-27		0.241922	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLURP1	5,361 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	3E-23		0.21404	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHISA3	5,363 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	5E-33		0.262549	[0.22-0.31] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RLN1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	4E-18		0.196633	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	8E-55		0.349128	[0.31-0.39] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRG1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	2E-27		0.242988	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNE2	5,364 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	1E-20		0.207745	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	105993257	105993258	rs28733392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXIN2	5,366 Icelandic ancestry individuals	NA	14q32.33		rs28733392-A	0.2313	3E-39		0.294661	[0.25-0.34] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	105998543	105998544	rs4074453	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	14q32.33	TMEM121	rs4074453-T	0.758	4E-29		0.218	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
1393	chr14	106000847	106000848	rs79486354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs79486354-G	NR	1E-10		0.0439	[0.031-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr14	106000847	106000848	rs79486354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs79486354-G	NR	3E-18		0.0595	[0.046-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1393	chr14	106004322	106004323	rs12100587	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RLN1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs12100587-G	0.1244	8E-17		0.241113	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004322	106004323	rs12100587	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs12100587-G	0.1244	1E-8		0.165819	[0.11-0.22] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	106004322	106004323	rs12100587	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICOS	5,365 Icelandic ancestry individuals	NA	14q32.33		rs12100587-G	0.1244	1E-21		0.271422	[0.22-0.33] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	3E-15		0.657966	[0.49-0.82] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	3E-17		0.702696	[0.54-0.87] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	3E-16		0.679872	[0.52-0.84] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	2E-11		0.558002	[0.4-0.72] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	7E-16		0.671872	[0.51-0.83] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FXYD4	5,365 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	3E-14		0.629092	[0.47-0.79] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	1E-8		0.474021	[0.31-0.64] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	1E-15		0.661632	[0.5-0.82] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106004943	106004944	rs74091228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPRV1	5,360 Icelandic ancestry individuals	NA	14q32.33		rs74091228-A	0.01361	3E-13		0.576149	[0.42-0.73] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106008315	106008316	rs61983271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs61983271-T	0.1269	5E-13		0.211227	[0.15-0.27] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	106008315	106008316	rs61983271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB131	5,366 Icelandic ancestry individuals	NA	14q32.33		rs61983271-T	0.1269	8E-11		0.18696	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106008315	106008316	rs61983271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTBS	5,359 Icelandic ancestry individuals	NA	14q32.33		rs61983271-T	0.1269	4E-11		0.185614	[0.13-0.24] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106008315	106008316	rs61983271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AMBN	5,361 Icelandic ancestry individuals	NA	14q32.33		rs61983271-T	0.1269	2E-7		0.147367	[0.092-0.203] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106008315	106008316	rs61983271	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	14q32.33	TMEM121	rs61983271-T	0.113280867007558	3E-6	(G_Bifidobacterium_RNT)	0.216688	[0.13-0.31] unit increase	Illumina [7711310] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VCY	5,365 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	1E-32		0.79089	[0.66-0.92] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UQCC3	5,366 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	2E-28		0.735465	[0.6-0.87] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMIE	5,366 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	5E-15		0.526339	[0.39-0.66] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUSD2	5,364 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	4E-41		0.882362	[0.75-1.01] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	5E-81		1.25262	[1.12-1.38] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RTN4	5,364 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-26		0.696243	[0.57-0.82] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF165	5,364 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-14		0.495135	[0.37-0.62] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	1E-91		1.33079	[1.2-1.46] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRH2	5,360 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-20		0.591517	[0.47-0.72] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-85		1.28223	[1.15-1.41] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	1E-64		1.11945	[0.99-1.25] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAVS	5,366 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	4E-15		0.520781	[0.39-0.65] unit decrease	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	1E-88		1.30884	[1.18-1.44] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GC	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-65		1.12986	[1-1.26] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FXYD4	5,365 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	1E-59		1.07213	[0.94-1.2] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FBN3	5,360 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	9E-50		0.946738	[0.82-1.07] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC4E	5,364 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	5E-17		0.560811	[0.43-0.69] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-50		0.992291	[0.86-1.12] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD84	5,367 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-37		0.852135	[0.72-0.98] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD40	5,364 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	6E-28		0.723328	[0.59-0.85] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf226	5,365 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	3E-38		0.833516	[0.71-0.96] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	2E-63		1.10172	[0.97-1.23] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP1A1	5,365 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	4E-17		0.564548	[0.43-0.7] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASPRV1	5,360 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	8E-60		1.01851	[0.9-1.14] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106017812	106017813	rs185289117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM19	5,343 Icelandic ancestry individuals	NA	14q32.33		rs185289117-G	0.01998	4E-25		0.629583	[0.51-0.75] unit increase	Illumina [7506463] (imputed)	N
1393	chr14	106019013	106019014	rs61983272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	14q32.33		rs61983272-C	NR	7E-31		0.0329	[0.027-0.038] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1393	chr14	106019013	106019014	rs61983272	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61983272-C	0.321	3E-34	(Beta-sarcoglycan, SGCB.7034.4.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
1393	chr14	106019013	106019014	rs61983272	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61983272-C	0.321	2E-36	(Di-N-acetylchitobiase, CTBS.6115.40.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
1393	chr14	106029908	106029909	rs112702477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs112702477-G	0.013	4E-14	(Retroviral-like aspartic protease 1, ASPRV1.13023.8.3)	0.91	[0.67-1.15] unit increase	Affymetrix [10572788] (imputed)	N
1393	chr14	106031771	106031779	rs374673134	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs374673134-C	0.014	3E-27	(Sialic acid-binding Ig-like lectin 10, SIGLEC10.6048.4.3)	1.25	[1.01-1.49] unit increase	Affymetrix [10572788] (imputed)	N
1394	chr14	106037349	106037350	rs55847330	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVI2B	5,363 Icelandic ancestry individuals	NA	14q32.33		rs55847330-T	0.1371	9E-27		0.295171	[0.24-0.35] unit increase	Illumina [7506463] (imputed)	N
1394	chr14	106051500	106051501	rs55701312	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs55701312-C	0.958	5E-45	(Multimerin-2, MMRN2.11895.21.3)	0.98	[0.84-1.12] unit decrease	Affymetrix [10572788] (imputed)	N
1394	chr14	106110913	106110914	rs11627594	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.33	IGHG2	rs11627594-T	0.38	2E-15		0.11	NR SD units decrease	Illumina [21568490] (imputed)	N
1394	chr14	106113366	106113367	rs10444776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	14q32.33		rs10444776-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1394	chr14	106114793	106114794	rs148393876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	14q32.33		rs148393876-A	NR	9E-20		0.0522	[0.041-0.063] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1394	chr14	106135270	106135271	rs34678053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	14q32.33		rs34678053-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1394	chr14	106135631	106135632	rs8015375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	14q32.33		rs8015375-A	0.508565	2E-9		0.0283573	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1394	chr14	106136309	106136310	rs7154333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	14q32.33		rs7154333-A	0.508671	3E-9		0.0284182	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1394	chr14	106161092	106161096	rs201541519	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Baseline cortisol levels in response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	14q32.33	IGH	rs201541519-?	NR	3E-7				Illumina [430492]	N
1395	chr14	106172879	106172880	rs11621145	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Immunoglobulin G index levels in multiple sclerosis	773 European ancestry Individuals, 165 Individuals	2,072 Individuals	14q32.33	intergenic	rs11621145-G	NR	4E-37		0.23	[NR] unit increase	NR [485236]	N
1395	chr14	106174220	106174221	rs117775520	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs117775520-A	0.041	3E-26	(HLA class II histocompatibility antigen, DM alpha chain, HLA.DMA.10639.1.3)	0.67	[0.55-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106174220	106174221	rs117775520	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.33	IGHA1	rs117775520-A	0.043	7E-20		0.29	NR SD units decrease	Illumina [21568490] (imputed)	N
1395	chr14	106175674	106175675	rs112763553	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.33	IGHA1	rs112763553-A	0.1467	2E-11		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
1395	chr14	106185327	106185328	rs138622220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs138622220-T	NR	6E-14		0.0398	[0.029-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1395	chr14	106185327	106185328	rs138622220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs138622220-T	NR	4E-9		0.0312	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1395	chr14	106185327	106185328	rs138622220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs138622220-T	NR	2E-38		0.0688	[0.058-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1395	chr14	106188229	106188230	rs1134590	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs1134590-T	0.748	4E-82	(Retroviral-like aspartic protease 1, ASPRV1.13023.8.3)	0.57	[0.51-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106188229	106188230	rs1134590	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs1134590-T	0.748	2E-170	(Carcinoembryonic antigen-related cell adhesion molecule 1, CEACAM1.8031.11.3)	0.78	[0.72-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106188229	106188230	rs1134590	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs1134590-T	0.748	1E-34	(Salivary acidic proline-rich phosphoprotein 1/2, PRH1.10502.15.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106192802	106192803	rs71426155	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs71426155-C	0.639	9E-210	(Potassium voltage-gated channel subfamily E member 2, KCNE2.10427.2.3)	0.79	[0.73-0.85] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106192802	106192803	rs71426155	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs71426155-C	0.639	9E-169	(Trem-like transcript 4 protein, TREML4.11139.4.3)	0.72	[0.66-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106192802	106192803	rs71426155	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs71426155-C	0.639	1E-163	(Protein shisa-3 homolog, SHISA3.7057.18.3)	0.71	[0.65-0.77] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106194460	106194461	rs8009444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8009444-A	0.728	9E-38	(Testis-specific basic protein Y 1, VCY.6295.67.3)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106194460	106194461	rs8009444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8009444-A	0.728	3E-679	(Multiple coagulation factor deficiency protein 2, MCFD2.10476.23.3)	1.19	[1.15-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106194460	106194461	rs8009444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8009444-A	0.728	3E-124	(Multimerin-2, MMRN2.11895.21.3)	0.65	[0.59-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106194460	106194461	rs8009444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8009444-A	0.728	2E-87	(Beta-1,4-glucuronyltransferase 1, B3GNT1.8259.25.3)	0.55	[0.49-0.61] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106194460	106194461	rs8009444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8009444-A	0.728	1E-44	(SLAM family member 5, CD84.8770.136.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106195254	106195255	rs11849582	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHEP1	rs11849582-G	0.668	9E-115	(Inducible T-cell costimulator, ICOS.14084.191.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106195254	106195255	rs11849582	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHEP1	rs11849582-G	0.668	8E-16	(Segment polarity protein dishevelled homolog DVL-2, DVL2.13575.40.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106195254	106195255	rs11849582	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHEP1	rs11849582-G	0.668	6E-114	(RING finger protein 165, RNF165.11561.32.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106195254	106195255	rs11849582	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHEP1	rs11849582-G	0.668	5E-60	(Beta-sarcoglycan, SGCB.7034.4.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106195718	106195719	rs7153315	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	14q32.33	ELK2AP	rs7153315-C	0.735	9E-7		0.94	[0.92-0.97]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1395	chr14	106195718	106195719	rs7153315	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHEP1	rs7153315-C	0.716	9E-37	(Tumor necrosis factor receptor superfamily member 11A, TNFRSF11A.8316.36.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106198978	106198979	rs72713385	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs72713385-T	0.135	2E-158	(Axin-2, AXIN2.8429.16.3)	1.03	[0.95-1.11] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs74093831-A	NR	9E-10		0.0169	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs74093831-A	NR	1E-15		0.0221	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	14q32.33	NR	rs74093831-A	NR	4E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs74093831-A	0.279	7E-52	(Uncharacterized protein C6orf226, C6orf226.8078.15.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs74093831-A	0.279	2E-183	(Sialic acid-binding Ig-like lectin 10, SIGLEC10.6048.4.3)	0.73	[0.67-0.79] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs74093831-A	0.279	1E-130	(Vitamin D-binding protein, GC.6581.50.3)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200002	106200003	rs74093831	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	14q32.33	IGHG1	rs74093831-A	0.3254	8E-9		0.08	NR SD units increase	Illumina [21568490] (imputed)	N
1395	chr14	106200231	106200232	rs28577986	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs28577986-A	0.274	6E-46	(Collagen alpha-2(IX) chain, COL9A2.9804.11.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200231	106200232	rs28577986	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs28577986-A	0.274	6E-14	(C-type lectin domain family 4 member E, CLEC4E.7077.9.4)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200231	106200232	rs28577986	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs28577986-A	0.274	4E-109	(Sushi domain-containing protein 2, SUSD2.10021.1.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200231	106200232	rs28577986	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs28577986-A	0.274	3E-32	(Transmembrane inner ear expressed protein, TMIE.7992.3.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106200600	106200601	rs200123836	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs200123836-T	0.267	3E-24	(Leucine-rich PPR motif-containing protein, mitochondrial, LRPPRC.9046.46.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106203839	106203840	rs12434433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs12434433-T	0.282	2E-14	(Dynactin-associated protein, DYNAP.10692.48.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106204292	106204293	rs61983884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	14q32.33		rs61983884-C	0.358582	2E-12		0.0309541	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1395	chr14	106204292	106204293	rs61983884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	14q32.33		rs61983884-C	0.358582	2E-8		0.02481	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1395	chr14	106204292	106204293	rs61983884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	14q32.33		rs61983884-C	0.358582	1E-12		0.0312148	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1395	chr14	106205021	106205022	rs12147642	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs12147642-T	0.662	3E-517	(Axin-2, AXIN2.8429.16.3)	1.0	[0.96-1.04] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106205021	106205022	rs12147642	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs12147642-T	0.662	2E-908	(Multiple coagulation factor deficiency protein 2, MCFD2.10476.23.3)	1.16	[1.12-1.2] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	7E-42	(Secreted Ly-6/uPAR-related protein 1, SLURP1.6401.73.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	6E-185	(Protein shisa-3 homolog, SHISA3.7057.18.3)	0.71	[0.67-0.75] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	4E-141	(Secretoglobin family 1C member 1, SCGB1C1.5960.49.3)	0.63	[0.59-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	4E-108	(Ameloblastin, AMBN.6522.57.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	3E-94	(Di-N-acetylchitobiase, CTBS.6115.40.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	3E-190	(Trem-like transcript 4 protein, TREML4.11139.4.3)	0.71	[0.67-0.75] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	2E-72	(Insulin growth factor-like family member 4, IGFL4.6353.60.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106209118	106209119	rs1071803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs1071803-C	0.667	2E-51	(Protein EVI2B, EVI2B.13028.2.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106211783	106211784	rs2012888	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs2012888-A	0.316	3E-12	(Neural cell adhesion molecule 1, NCAM1.7746.230.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106215479	106215480	rs11624464	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG1	rs11624464-A	0.654	1E-17	(Paired immunoglobulin-like type 2 receptor alpha, PILRA.8683.119.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106219890	106219891	rs9805939	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs9805939-T	0.657	7E-47	(Sodium/potassium-transporting ATPase subunit alpha-1, ATP1A1.11993.227.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	8E-81	(Inducible T-cell costimulator, ICOS.14084.191.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	8E-55	(Insulin growth factor-like family member 4, IGFL4.6353.60.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	6E-135	(Protein shisa-3 homolog, SHISA3.7057.18.3)	0.68	[0.62-0.74] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	5E-84	(RING finger protein 165, RNF165.11561.32.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	5E-540	(Multiple coagulation factor deficiency protein 2, MCFD2.10476.23.3)	1.13	[1.09-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	5E-173	(Potassium voltage-gated channel subfamily E member 2, KCNE2.10427.2.3)	0.76	[0.7-0.82] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	4E-142	(Trem-like transcript 4 protein, TREML4.11139.4.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	3E-49	(Beta-sarcoglycan, SGCB.7034.4.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	1E-74	(Di-N-acetylchitobiase, CTBS.6115.40.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	1E-74	(Ameloblastin, AMBN.6522.57.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	1E-340	(Axin-2, AXIN2.8429.16.3)	0.98	[0.94-1.02] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	1E-147	(Carcinoembryonic antigen-related cell adhesion molecule 1, CEACAM1.8031.11.3)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106222104	106222105	rs61985370	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs61985370-T	0.605	1E-100	(Secretoglobin family 1C member 1, SCGB1C1.5960.49.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106232584	106232585	rs10136766	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG3	rs10136766-G	0.665	1E-215	(Carcinoembryonic antigen-related cell adhesion molecule 1, CEACAM1.8031.11.3)	0.77	[0.73-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106232584	106232585	rs10136766	23225573	Buck D	2012-09-08	Ann Neurol	Genetic variants in the immunoglobulin heavy chain locus are associated with the IgG index in multiple sclerosis.	IgG levels	229 European ancestry multiple sclerosis cases	409 European ancestry multiple sclerosis cases	14q32.33	IGHG1, IGHG2, IGHG3	rs10136766-A	0.27	8E-16		0.229	[NR] unit increase	Illumina [526014]	N
1395	chr14	106235766	106235767	rs77307099	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs77307099-T	0.311	3E-104	(RING finger protein 165, RNF165.11561.32.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106236457	106236458	rs11628528	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs11628528-T	0.66	6E-53	(Apoptosis-inducing factor 1, mitochondrial, AIFM1.13424.51.3)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106239000	106239001	rs2259243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs2259243-C	0.286	7E-119	(Secretoglobin family 1C member 1, SCGB1C1.5960.49.3)	0.67	[0.61-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106239000	106239001	rs2259243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs2259243-C	0.286	5E-200	(Potassium voltage-gated channel subfamily E member 2, KCNE2.10427.2.3)	0.83	[0.77-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106239000	106239001	rs2259243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs2259243-C	0.286	4E-443	(Axin-2, AXIN2.8429.16.3)	1.1	[1.06-1.14] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106239000	106239001	rs2259243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs2259243-C	0.286	3E-92	(Ameloblastin, AMBN.6522.57.3)	0.59	[0.53-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106239000	106239001	rs2259243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs2259243-C	0.286	2E-100	(Inducible T-cell costimulator, ICOS.14084.191.3)	0.62	[0.56-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106239076	106239077	rs28671514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	14q32.33		rs28671514-A	NR	8E-11		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1395	chr14	106239867	106239868	rs2853880	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHG3	rs2853880-G	0.34	2E-29	(HLA class II histocompatibility antigen, DM alpha chain, HLA.DMA.10639.1.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106243462	106243463	rs35991354	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs35991354-C	0.349	3E-166	(Carcinoembryonic antigen-related cell adhesion molecule 1, CEACAM1.8031.11.3)	0.74	[0.68-0.8] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106248398	106248399	rs7144298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs7144298-A	0.632	1E-20	(Mitochondrial sodium/hydrogen exchanger 9B2, SLC9B2.9088.20.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	8E-22	(Cyclin-C, CCNC.7817.36.3)	0.42	[0.34-0.5] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	8E-135	(Vitamin D-binding protein, GC.6581.50.3)	1.01	[0.93-1.09] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	6E-146	(Retroviral-like aspartic protease 1, ASPRV1.13023.8.3)	1.04	[0.96-1.12] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	4E-111	(Beta-1,4-glucuronyltransferase 1, B3GNT1.8259.25.3)	0.92	[0.84-1] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	3E-57	(Salivary acidic proline-rich phosphoprotein 1/2, PRH1.10502.15.3)	0.68	[0.6-0.76] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	3E-23	(Basic salivary proline-rich protein 4, PRB4.12590.67.3)	0.43	[0.35-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	2E-70	(Testis-specific basic protein Y 1, VCY.6295.67.3)	0.75	[0.67-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	2E-66	(Uncharacterized protein C6orf226, C6orf226.8078.15.3)	0.73	[0.65-0.81] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	2E-51	(SLAM family member 5, CD84.8770.136.3)	0.65	[0.57-0.73] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	2E-200	(Sialic acid-binding Ig-like lectin 10, SIGLEC10.6048.4.3)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	2E-119	(Carcinoembryonic antigen-related cell adhesion molecule 1, CEACAM1.8031.11.3)	0.96	[0.88-1.04] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	1E-50	(Sodium/potassium-transporting ATPase subunit alpha-1, ATP1A1.11993.227.3)	0.64	[0.56-0.72] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	1E-325	(Multiple coagulation factor deficiency protein 2, MCFD2.10476.23.3)	1.42	[1.34-1.5] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	1E-29	(Transmembrane inner ear expressed protein, TMIE.7992.3.3)	0.49	[0.41-0.57] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106252434	106252435	rs58452280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs58452280-C	0.123	1E-199	(Multimerin-2, MMRN2.11895.21.3)	1.18	[1.1-1.26] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	8E-70	(Testis-specific basic protein Y 1, VCY.6295.67.3)	0.76	[0.68-0.84] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	7E-41	(Collagen alpha-2(IX) chain, COL9A2.9804.11.3)	0.59	[0.51-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	5E-131	(Retroviral-like aspartic protease 1, ASPRV1.13023.8.3)	1.01	[0.93-1.09] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	3E-87	(Sushi domain-containing protein 2, SUSD2.10021.1.3)	0.85	[0.77-0.93] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	3E-21	(Amelogenin, X isoform, AMELX.8578.45.3)	0.42	[0.34-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	3E-14	(Protein SPACA7, SPACA7.6466.7.3)	0.34	[0.26-0.42] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	2E-12	(Tumor necrosis factor receptor superfamily member 16, NGFR.8949.3.3)	0.32	[0.24-0.4] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	1E-178	(Multimerin-2, MMRN2.11895.21.3)	1.15	[1.07-1.23] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106264934	106264935	rs112206797	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	RP11-417P24.1	rs112206797-G	0.115	1E-171	(Sialic acid-binding Ig-like lectin 10, SIGLEC10.6048.4.3)	1.13	[1.05-1.21] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106267673	106267673	rs571755931	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs571755931-AGAACCACGGACAGC	0.359	8E-256	(Axin-2, AXIN2.8429.16.3)	0.89	[0.83-0.95] unit increase	Affymetrix [10572788] (imputed)	N
1395	chr14	106267673	106267673	rs571755931	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs571755931-AGAACCACGGACAGC	0.359	1E-397	(Multiple coagulation factor deficiency protein 2, MCFD2.10476.23.3)	1.04	[1-1.08] unit increase	Affymetrix [10572788] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on unswitched memory B cell	3,636 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45717	4E-81		0.5907	[0.53-0.65] unit decrease	Illumina [18230756] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45632	4E-76		0.5713	[0.51-0.63] unit decrease	Illumina [18238311] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38dim B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45632	9E-90		0.6238	[0.56-0.68] unit decrease	Illumina [18238174] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38-  B cell	3,642 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45642	5E-58		0.5029	[0.44-0.56] unit decrease	Illumina [18233905] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45631	2E-117		0.7004	[0.64-0.76] unit decrease	Illumina [18238289] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45632	5E-103		0.6633	[0.6-0.72] unit decrease	Illumina [18238174] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45641	4E-87		0.6123	[0.55-0.67] unit decrease	Illumina [18238197] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45635	5E-81		0.5948	[0.54-0.65] unit decrease	Illumina [18238203] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45633	3E-8		0.1755	[0.11-0.24] unit decrease	Illumina [18238284] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45632	5E-13		0.2255	[0.16-0.29] unit decrease	Illumina [18238311] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45631	1E-15		0.2486	[0.19-0.31] unit decrease	Illumina [18238289] (imputed)	N
1396	chr14	106306840	106306841	rs709589	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	14q32.33		rs709589-T	0.45632	6E-9		0.183	[0.12-0.24] unit decrease	Illumina [18238311] (imputed)	N
1396	chr14	106321329	106321330	rs45471499	33069728	Pu W	2020-10-15	J Invest Dermatol	Exome-wide association analysis suggests LRP2BP as a susceptibility gene for endothelial injury in systemic sclerosis in Han Chinese population.	Systemic sclerosis	527 Han Chinese ancestry cases, 5,024 Han Chinese ancestry controls	479 Han Chinese ancestry cases, 1,096 Han Chinese ancestry controls	14q32.33	IGHM	rs45471499-A	0.1021	1E-9		1.55	[1.35-1.79]	Illumina [84228]	N
1396	chr14	106345667	106345668	rs112385527	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	14q32.33	MIR4537, FAM30A	rs112385527-?		4E-8		1.2592	[0.81-1.71] unit decrease	Illumina [31500000] (imputed)	N
1396	chr14	106362490	106362491	rs185253449	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs185253449-T	0.01	5E-18	(Multimerin-2, MMRN2.11895.21.3)	1.25	[0.98-1.52] unit increase	Affymetrix [10572788] (imputed)	N
1396	chr14	106370436	106370437	rs79874727	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHD3-10	rs79874727-A	0.145	4E-16	(CMRF35-like molecule 6, CD300C.13406.161.3)	0.34	[0.26-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1396	chr14	106424289	106424289	rs781858752	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA		NR	rs781858752-TG	0.364968	8E-15		0.00847238	[0.0063-0.0106] unit increase	Affymetrix [16582268] (imputed)	N
1397	chr14	106445680	106445681	rs56401446	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	AB019441.29	rs56401446-G	0.619	6E-18	(26S proteasome non-ATPase regulatory subunit 5, PSMD5.10716.35.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1397	chr14	106479136	106479137	rs78745329	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV4-4	rs78745329-G	0.11	5E-61	(Apoptosis-inducing factor 1, mitochondrial, AIFM1.13424.51.3)	0.65	[0.57-0.73] unit increase	Affymetrix [10572788] (imputed)	N
1397	chr14	106481080	106481081	rs73365418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	14q32.33	NR	rs73365418-G	NR	3E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1397	chr14	106483987	106483988	rs75605943	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs75605943-A	0.082	3E-48	(Apoptosis-inducing factor 1, mitochondrial, AIFM1.13424.51.3)	0.74	[0.64-0.84] unit increase	Affymetrix [10572788] (imputed)	N
1397	chr14	106514652	106514653	rs11160915	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	14q32.33	IGHV3-7	rs11160915-A	0.444	3E-35		0.849	[0.827-0.871]	Affymetrix [7871717] (imputed)	N
1397	chr14	106523407	106523408	rs4511431	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV3-7	rs4511431-T	0.381	3E-13	(Dynein light chain 1, cytoplasmic, DYNLL1.3881.49.2)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1397	chr14	106526932	106526933	rs34761731	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV3-7	rs34761731-G	0.41	1E-15	(Fibroblast growth factor 8 isoform A, FGF8.4394.71.2)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1397	chr14	106527499	106527500	rs34019140	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	14q32.33	NR	rs34019140-G	0.564252	7E-42		0.011661	[0.01-0.0134] unit increase	Affymetrix [16582268] (imputed)	N
1397	chr14	106530825	106530826	rs112226238	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV1-8	rs112226238-G	0.377	8E-14	(Lysozyme g-like protein 1, LYG1.9243.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1398	chr14	106582277	106582278	rs28508297	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	14q32.33	intergenic	rs28508297-C	0.086	5E-17		0.35	[0.27-0.43] unit decrease	Affymetrix [339439]	N
1399	chr14	106721891	106721892	rs117804109	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHVII-22-1	rs117804109-C	0.024	6E-14	(Glutamate receptor ionotropic, delta-2, GRID2.12758.47.3)	0.65	[0.47-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1399	chr14	106748981	106748982	rs35162472	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	HOMER2P2	rs35162472-G	0.303	3E-32	(Beta-defensin 112, DEFB112.5689.1.3)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1400	chr14	106824366	106824367	rs114529226	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	14q32.33	IGHVII-33-1	rs114529226-A	0.0038	7E-9		0.652583	[0.43-0.87] mg/dl decrease	Illumina [24111857] (imputed)	N
1400	chr14	106875034	106875035	rs73365510	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.33	NR	rs73365510-A	0.07082200000000005	4E-12		0.0220599	[0.016-0.028] unit increase	Affymetrix [16578495] (imputed)	N
1400	chr14	106875385	106875386	rs73367233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	14q32.33	NR	rs73367233-A	0.06955699999999998	4E-8		0.0254333	[0.016-0.035] unit increase	Affymetrix [16583148] (imputed)	N
1400	chr14	106875549	106875550	rs77432559	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	14q32.33	NR	rs77432559-G	0.07891499999999996	4E-11		0.0373218	[0.026-0.049] unit increase	Affymetrix [16580851] (imputed)	N
1400	chr14	106880721	106880722	rs66526029	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV4-39	rs66526029-G	0.193	2E-12	(Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, PDE6D.13491.40.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1400	chr14	106920387	106920387	rs113358888	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	HOMER2P1	rs113358888-TA	0.22	3E-15	(Nuclear receptor coactivator 2, NCOA2.14045.12.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1401	chr14	106961342	106961342	rs35548284	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	14q32.33	NR	rs35548284-G	0.776514	4E-11		0.0108753	[0.0076-0.0141] unit increase	Affymetrix [16578495] (imputed)	N
1401	chr14	106969888	106969889	rs17112849	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	14q32.33	NR	rs17112849-A	0.01	8E-6	(total body)	1.33	[0.74-1.92] g decrease	Illumina [> 1100000]	N
1401	chr14	106969888	106969889	rs17112849	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	14q32.33	NR	rs17112849-A	0.01	6E-7	(pelvis)	1.6	[0.97-2.23] g decrease	Illumina [> 1100000]	N
1401	chr14	106969888	106969889	rs17112849	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	14q32.33	NR	rs17112849-A	0.01	2E-7	(lumbar spine)	1.73	[1.08-2.38] g decrease	Illumina [> 1100000]	N
1401	chr14	106978215	106978216	rs4145487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV3-47	rs4145487-T	0.247	2E-32	(Exosome complex component RRP40, EXOSC3.12605.1.3)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
1401	chr14	107011126	107011127	rs1034553	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	14q32.33	abParts	rs1034553-T	0.299344	3E-27	(leucylglycine)	0.266	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
1401	chr14	107011126	107011127	rs1034553	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	14q32.33	abParts	rs1034553-T	0.299344	3E-27	(leucylglycine)	0.266	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
1401	chr14	107020613	107020614	rs146639413	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	14q32.33	NR	rs146639413-?	NR	5E-6		0.0080135	[0.0046-0.0115] unit increase	Affymetrix [805426] (imputed)	N
1401	chr14	107043360	107043361	rs2516928	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	14q32.33	intergenic	rs2516928-T	0.069	1E-15		0.4	[0.3-0.49] unit decrease	Affymetrix [339439]	N
1401	chr14	107054596	107054597	rs57391541	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	14q32.33	NR	rs57391541-T	0.7319	8E-12		0.0809	[0.058-0.104] unit decrease	Illumina [~ 10600000] (imputed)	N
1402	chr14	107100922	107100923	rs12882946	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV3-62	rs12882946-G	0.386	2E-24	(Ephrin type-B receptor 3, EPHB3.9220.7.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1402	chr14	107101694	107101695	rs11846409	28492228	Parks T	2017-05-11	Nat Commun	Association between a common immunoglobulin heavy chain allele and rheumatic heart disease risk in Oceania.	Rheumatic heart disease	767 Oceanian ancestry cases, 1,462 Oceanian ancestry controls, 168 Fijian Indian cases, 151 Fijian Indian controls, 71 mixed and other ancestry cases, 236 mixed and other ancestry controls		14q32.33	IGHV4-61	rs11846409-?		4E-9	(IGHV4-61*02 lead SNP)			Illumina [5356509] (imputed)	N
1402	chr14	107107769	107107770	rs61997579	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC10	5,368 Icelandic ancestry individuals	NA	14q32.33		rs61997579-A	0.2494	4E-11		0.14864	[0.1-0.19] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107109025	107109026	rs17113217	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GC	5,368 Icelandic ancestry individuals	NA	14q32.33		rs17113217-G	0.2512	3E-12		0.156522	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107110456	107110457	rs916546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs916546-A	0.2496	1E-9		0.137055	[0.093-0.181] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107120687	107120688	rs11624918	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCFD2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs11624918-C	0.2494	2E-10		0.143647	[0.1-0.188] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107120687	107120688	rs11624918	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEACAM1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs11624918-C	0.2494	2E-10		0.142557	[0.098-0.187] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107141915	107141916	rs10139058	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	SLC20A1P1	rs10139058-T	0.383	1E-25	(Lysosomal acid phosphatase, ACP2.9237.54.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1402	chr14	107142377	107142378	rs8004835	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	NR	rs8004835-C	0.383	1E-25	(Lysosomal acid phosphatase, ACP2.9237.54.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
1402	chr14	107148402	107148403	rs10144098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs10144098-T	0.2778	1E-7		0.114665	[0.072-0.157] unit increase	Illumina [7506463] (imputed)	N
1402	chr14	107149625	107149626	rs10147756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs10147756-A	0.1021	1E-7		0.16841	[0.11-0.23] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107149625	107149626	rs10147756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,368 Icelandic ancestry individuals	NA	14q32.33		rs10147756-A	0.1021	3E-7		0.162941	[0.1-0.23] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107149625	107149626	rs10147756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBE1	5,368 Icelandic ancestry individuals	NA	14q32.33		rs10147756-A	0.1021	1E-8		0.180619	[0.12-0.24] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107152026	107152027	rs4774175	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	14q32.33	IGHV1-69	rs4774175-A	NR	6E-9		1.2	[1.13-1.28]	Affymetrix, Illumina [6265045] (imputed)	N
1402	chr14	107157911	107157912	rs2731168	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC52	5,363 Icelandic ancestry individuals	NA	14q32.33		rs2731168-C	0.4238	5E-39		0.247584	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107167781	107167782	rs3814922	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV1-69	rs3814922-C	0.405	3E-13	(Stromal interaction molecule 1, STIM1.9271.101.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1402	chr14	107170076	107170077	rs11845244	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB3	5,359 Icelandic ancestry individuals	NA	14q32.33		rs11845244-T	0.39	1E-21		0.183771	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107170076	107170077	rs11845244	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATG5	5,366 Icelandic ancestry individuals	NA	14q32.33		rs11845244-T	0.39	9E-14		0.146892	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107170076	107170077	rs11845244	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARG1	5,366 Icelandic ancestry individuals	NA	14q32.33		rs11845244-T	0.39	7E-17		0.161913	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107170076	107170077	rs11845244	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP2	5,365 Icelandic ancestry individuals	NA	14q32.33		rs11845244-T	0.39	5E-16		0.156354	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1402	chr14	107170076	107170077	rs11845244	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV1-69	rs11845244-T	0.354	2E-20	(Beta-defensin 119, DEFB119.13455.10.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1402	chr14	107172873	107172874	rs4259951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV1-69	rs4259951-A	0.706	2E-16	(Gamma-aminobutyric acid type B receptor subunit 2, GABBR2.13948.50.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1402	chr14	107176212	107176213	rs10129255	21326860	Tsai FJ	2011-02-04	PLoS One	Identification of novel susceptibility Loci for kawasaki disease in a Han chinese population by a genome-wide association study.	Kawasaki disease	250 Han Chinese ancestry cases, 446 Han Chinese ancestry controls	208 Han Chinese ancestry cases, 366 Han Chinese ancestry controls	14q32.33	IGHV	rs10129255-A	0.34	7E-6		1.315	[1.116-1.551]	Affymetrix [723638]	N
1402	chr14	107180573	107180574	rs2337406	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	14q32.33	IGH	rs2337406-C	0.897	3E-7		1.1494	[1.09-1.2]	Illumina [7055881] (imputed)	N
1402	chr14	107209225	107209226	rs2105997	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	14q32.33	IGHV4-39, HOMER2P1, IGHV4-61, IGHV3-64, IGHV3-66, IGHV1-69, IGHV3-72	rs2105997-T	0.2276	8E-6		0.0388	NR unit increase	NR [NR] (imputed)	N
1402	chr14	107211210	107211211	rs2073668	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	14q32.33	IGHV3-73	rs2073668-A	0.395	3E-12	(Potassium-transporting ATPase subunit beta, ATP4B.9994.217.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
741	chr15	20564574	20564575	rs6599965	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q11.1	POTE15	rs6599965-?	NR	8E-6	(glycerol)	2.484624	[1.4-3.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
755	chr15	22321290	22321290	rs144971434	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	15q11.2		rs144971434-CA	NR	4E-8		0.975	[0.63-1.32] unit decrease	Affymetrix [509886] (imputed)	N
758	chr15	22778999	22779000	rs8032977	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	15q11.2	NR	rs8032977-?	NR	3E-10		6.297	NR z score decrease	Illumina [at least 830937] (imputed)	N
759	chr15	22857405	22857406	rs8039223	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	15q11.2	TUBGCP5	rs8039223-A	0.8955	3E-7	(male)	0.2268	[0.14-0.31] unit decrease	NR [NR] (imputed)	N
759	chr15	22876909	22876910	rs62009532	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	15q11.2	TUBGCP5, CYFIP1	rs62009532-A	0.9063	1E-6	(male)	0.1946	[0.12-0.27] unit decrease	NR [NR] (imputed)	N
759	chr15	22885505	22885506	rs7183340	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	15q11.2	TUBGCP5	rs7183340-?		3E-6	(male)	0.415	[0.24-0.59] unit increase	NR [~ 5500000] (imputed)	N
759	chr15	22923741	22923742	rs11636046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q11.2		rs11636046-?	NR	1E-10				NR [~ 8900000] (imputed)	N
760	chr15	22945313	22945314	rs8029108	32612638	Al-Khelaifi F	2020-06-16	Front Genet	Genome-Wide Association Study Reveals a Novel Association Between MYBPC3 Gene Polymorphism, Endurance Athlete Status, Aerobic Capacity and Steroid Metabolism.	World class endurance athleticism	662 European ancestry cases, 134 European ancestry controls	NA	15q11.2	CYFiP1	rs8029108-T	0.4	9E-6		1.89	[1.62-2.16]	Illumina [341385]	N
760	chr15	22969231	22969232	rs7170637	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q11.2		rs7170637-A	0.1652	1E-8		0.1158296	[0.074-0.158] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
760	chr15	22969231	22969232	rs7170637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q11.2	CYFIP1	rs7170637-A	0.159902	1E-21		0.029430019	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
760	chr15	22969231	22969232	rs7170637	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q11.2	CYFIP1	rs7170637-G	0.83984	1E-12		0.0180226	[0.013-0.023] unit increase	NR [13737936] (imputed)	N
760	chr15	22969231	22969232	rs7170637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q11.2		rs7170637-?	NR	3E-11				NR [~ 8900000] (imputed)	N
760	chr15	22969231	22969232	rs7170637	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q11.2		rs7170637-?	NR	2E-9		0.0172789	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
760	chr15	22981274	22981275	rs66901244	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q11.2	NR	rs66901244-?	NR	6E-6	(Chao1 richness estimate)	0.871187	[0.5-1.25] unit decrease	Illumina [5293637] (imputed)	N
760	chr15	22981274	22981275	rs66901244	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q11.2	NR	rs66901244-?	NR	4E-6	(Richness)	22.4803	[13-31.96] unit decrease	Illumina [5293637] (imputed)	N
760	chr15	22981274	22981275	rs66901244	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q11.2	NR	rs66901244-?	NR	4E-6	(ACE metric)	1.44568	[0.83-2.06] unit decrease	Illumina [5293637] (imputed)	N
760	chr15	22999856	22999857	rs2278458	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	15q11.2	NIPA1, NIPA2, CYFIP1, TUBGCP5	rs2278458-?	NR	4E-7	(EA)	0.0101	[0.0097-0.0105] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
760	chr15	22999856	22999857	rs2278458	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	15q11.2	NIPA1, NIPA2, CYFIP1, TUBGCP5	rs2278458-?	NR	3E-6		0.0104	[0.01-0.011] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
761	chr15	23075221	23075222	rs11858281	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	15q11.2	NR	rs11858281-?		8E-6	(IL12B)			Illumina [NR]	N
761	chr15	23090195	23090196	rs62001116	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	15q11.2	NIPA1	rs62001116-A	0.3608	5E-6		0.0393	[0.022-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
762	chr15	23229366	23229367	rs8031320	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q11.2		rs8031320-G	0.67777	6E-6		0.033021	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
764	chr15	23497438	23497439	rs145663559	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	15q11.2	NR	rs145663559-A		8E-7		0.242	[NR] unit increase	Illumina [NR]	N
765	chr15	23639029	23639030	rs868625852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q11.2	NR	rs868625852-T	0.01568	3E-8	(LRRK2)	0.04337	NR unit increase	Illumina [1671387] (imputed)	N
765	chr15	23647410	23647411	rs937741	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	15q11.2	HERC2P6	rs937741-?	NR	5E-7	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
765	chr15	23647748	23647749	rs183418565	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	15q11.2	NR	rs183418565-?	NR	2E-6				NR [up to 8466825] (imputed)	N
766	chr15	23809875	23809876	rs6576457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q11.2		rs6576457-?	NR	6E-20				NR [~ 8900000] (imputed)	N
766	chr15	23810651	23810652	rs117686021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q11.2		rs117686021-T	NR	5E-17		0.0483	[0.037-0.06] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
766	chr15	23810651	23810652	rs117686021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q11.2		rs117686021-T	0.041094	5E-17		0.0482797	[0.037-0.06] unit decrease	Illumina [13479295] (imputed)	N
766	chr15	23810651	23810652	rs117686021	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q11.2	MKRN3	rs117686021-?	NR	6E-16		0.06609337	[0.05-0.082] unit decrease	Illumina [27896057] (imputed)	N
766	chr15	23814665	23814666	rs6576462	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	15q11.2	MKRN3	rs6576462-C	0.937	1E-15		0.39	[0.29-0.48] unit increase	Affymetrix [339439]	N
766	chr15	23817720	23817721	rs2900	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q11.2	NR	rs2900-G	0.860145730752114	4E-6	(IGP14)	0.2021	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
766	chr15	23852206	23852207	rs143067777	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megasphaera abundance in stool	5,959 Finnish ancestry individuals	NA	15q11.2		rs143067777-C	0.0214777	3E-8		0.226106	[0.15-0.31] unit increase	Illumina [7980478] (imputed)	N
767	chr15	23888265	23888266	rs11161318	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q11.2	NR	rs11161318-?	NR	2E-29				Affymetrix [NR]	N
767	chr15	23924331	23924332	rs850799	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	15q11.2	MAGEL2, NDN	rs850799-G	NR	5E-8	(Phosphatidylcholine with acyl-alkyl residue sum C42:3)	0.285624	[0.18-0.39] unit increase	Illumina [up to 9281895] (imputed)	N
767	chr15	23932466	23932467	rs3743340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q11.2		rs3743340-A	NR	2E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
767	chr15	23940400	23940401	rs28706770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q11.2		rs28706770-A	NR	1E-8		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
767	chr15	23941677	23941678	rs1818917	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q11.2	NDN	rs1818917-C	0.487558	2E-9		0.0114094	[0.0077-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
767	chr15	23944488	23944489	rs1608722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q11.2		rs1608722-T	NR	1E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
767	chr15	23974857	23974858	rs12148636	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	15q11.2	NR	rs12148636-T		9E-6		0.0805	[0.045-0.116] SD units increase	NR [10700000] (imputed)	N
768	chr15	24002326	24002327	rs824192	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	15q11.2	NDN	rs824192-T	0.41	5E-6		0.43	[0.25-0.61] unit decrease	Illumina [NR] (imputed)	N
768	chr15	24007728	24007729	rs824207	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q11.2	NDN	rs824207-A	0.465213	3E-11		0.00930969	[0.0066-0.0121] unit decrease	Affymetrix [12370749]	N
768	chr15	24038394	24038395	rs41408454	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea during REM sleep (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	15q11.2	intergenic	rs41408454-G		9E-7	(women)	0.523	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
768	chr15	24046165	24046166	rs111821600	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	15q11.2	NDN	rs111821600-A	NR	4E-6	(men)	0.398	[0.23-0.57] unit decrease	Illumina [5527232] (imputed)	N
768	chr15	24062914	24062915	rs7164923	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	15q11.2	NR	rs7164923-T		5E-6				Illumina [2373249] (imputed)	N
769	chr15	24124703	24124704	rs1380551	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	15q11.2	intergenic	rs1380551-A	0.15	4E-7	(males)	0.18	[0.1-0.26] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
769	chr15	24152093	24152094	rs12148769	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	15q11.2	MKRN3, MAGEL2	rs12148769-G	0.9	5E-11		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
769	chr15	24159671	24159672	rs75389281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q11.2		rs75389281-?	NR	3E-12				NR [~ 8900000] (imputed)	N
769	chr15	24168411	24168412	rs58283628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q11.2		rs58283628-?	NR	4E-8				NR [~ 8900000] (imputed)	N
769	chr15	24168949	24168950	rs9783733	33884653	Li C	2021-04-21	Mov Disord	Genetic Modifiers of Age at Onset for Parkinson's Disease in Asians: A Genome-Wide Association Study.	Parkinson's disease (age of onset)	3,456 Chinese ancestry individuals	1,490 Chinese ancestry individuals	15q11.2	NDN, PWRN4	rs9783733-?		3E-9		2.3	[1.54-3.06] unit increase	Illumina [~ 660000] (imputed)	N
769	chr15	24231754	24231755	rs150760253	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	15q11.2	NR	rs150760253-T	0.045	9E-6		0.3795	[0.21-0.55] unit decrease	Illumina [NR] (imputed)	N
770	chr15	24266276	24266277	rs115001897	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	15q11.2		rs115001897-?	NR	2E-9				Illumina [1128286]	N
770	chr15	24316068	24316069	rs1850479	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q11.2	NR	rs1850479-?		3E-6				Illumina [4322238] (imputed)	N
770	chr15	24317332	24317333	rs1976756	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebral cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	15q11.2	PWRN4	rs1976756-?	NR	2E-6				Illumina [at least 653030]	N
770	chr15	24346451	24346452	rs190989442	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q11.2	NR	rs190989442-G	NR	6E-6	(conditioned on rs1426654)	1.34191	[0.76-1.92] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
772	chr15	24588550	24588551	rs4467035	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	15q11.2	PWRN2, PWRN3	rs4467035-G	0.08	3E-11		6.66	NR z score decrease	Illumina [at least 900015] (imputed)	N
772	chr15	24596718	24596719	rs3803514	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q11.2	intergenic	rs3803514-G	NR	8E-6				Illumina [up to 11995908] (imputed)	N
772	chr15	24618467	24618469	rs569630056	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	15q11.2	NR	rs569630056-?	NR	9E-6		0.9931	[0.59-1.4] unit decrease	Affymetrix [7154205] (imputed)	N
773	chr15	24642460	24642461	rs528785443	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	15q11.2	PWRN1	rs528785443-C	0.9963	7E-9	(Cer d18:2/16:0)	0.9446	[0.6-1.29] unit decrease	Illumina [~ 47000000] (imputed)	N
773	chr15	24741290	24741291	rs35600665	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	C15orf2	rs35600665-A	0.151	7E-6	(DBP )	0.02	[NR] mmHg increase	Illumina [899892]	N
774	chr15	24818496	24818497	rs7403037	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	15q11.2	NR	rs7403037-T	0.8174	4E-6		0.12	[0.069-0.171] unit decrease	Illumina [up to 1980188] (imputed)	N
774	chr15	24824187	24824188	rs11858159	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA	15q11.2	PWRN1	rs11858159-?	NR	9E-7	(AA)	0.005737	[0.0034-0.008] unit increase	Illumina [at least 620901]	N
774	chr15	24851715	24851716	rs61993164	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q11.2	Intergenic	rs61993164-C	NR	9E-7	(men)	0.0969551	[0.058-0.136] unit increase	Illumina [13520550] (imputed)	N
775	chr15	24923282	24923283	rs36032407	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q11.2	NR	rs36032407-A	0.03659	2E-8	(PLD3)	0.01542	NR unit increase	Illumina [1671387] (imputed)	N
775	chr15	24924662	24924663	rs12902137	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	15q11.2	C15orf2	rs12902137-T	0.72	6E-6	(Age 20-60 years)	0.1809	[0.10-0.26] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
775	chr15	24964596	24964597	rs8027714	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	15q11.2	C15orf2, SNRPN	rs8027714-A	0.201	5E-9				Illumina [5088365] (imputed)	N
775	chr15	25022987	25022988	rs8030136	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	15q11.2	SNRPN	rs8030136-T	0.17	6E-6	(Age 20-81 years)	0.1934	[0.11-0.28] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
776	chr15	25036454	25036455	rs12594190	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	15q11.2	NR	rs12594190-G	NR	4E-7		0.1355	[0.083-0.188] SD units decrease	NR [10700000] (imputed)	N
776	chr15	25078786	25078787	rs3867498	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	15q11.2	SNRPN	rs3867498-?	NR	1E-6	(FEV1slope)			Affymetrix [70897]	N
776	chr15	25098626	25098627	rs34318108	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	15q11.2	SNRPN	rs34318108-A	NR	5E-6		0.11261877	[0.064-0.161] unit decrease	Affymetrix [9576485] (imputed)	N
776	chr15	25102440	25102441	rs904310	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT5)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	15q11.2	SNRPN	rs904310-?	NR	4E-8		0.39	[0.25-0.53] unit increase	Affymetrix [2135235] (imputed)	N
776	chr15	25106553	25106554	rs72693656	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	15q11.2	NR	rs72693656-T	0.48	8E-6				Illumina [4877242] (imputed)	N
776	chr15	25133985	25133986	rs2030062	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	SNRPN	rs2030062-G	0.105	2E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
776	chr15	25145126	25145127	rs2201840	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	15q11.2	SNRPN	rs2201840-?	NR	3E-6				Illumina [659222]	N
777	chr15	25170169	25170170	rs12592731	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	15q11.2	NR	rs12592731-?		8E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
777	chr15	25183092	25183093	rs11634944	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	15q11.2	NR	rs11634944-C		1E-6		0.1214	[0.072-0.171] SD units increase	NR [10700000] (imputed)	N
777	chr15	25257584	25257585	rs2554444	31712720	Forstner AJ	2019-11-11	Mol Psychiatry	Genome-wide association study of panic disorder reveals genetic overlap with neuroticism and depression.	Panic disorder	2,147 European ancestry cases, 7,760 European ancestry controls	2,408 European ancestry cases, 228,470 European ancestry controls	15q11.2	SNRPN, SNURF	rs2554444-T	NR	3E-6		1.2048193	NR	Illumina [8757275] (imputed)	N
778	chr15	25350473	25350474	rs8033133	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	15q11.2	NR	rs8033133-A	0.34	9E-6	(AA)	0.09	[0.053-0.127] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
778	chr15	25387185	25387186	rs4906947	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs4906947-?	NR	4E-8				NR [NR]	N
778	chr15	25387185	25387186	rs4906947	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs4906947-?	NR	2E-8				NR [NR]	N
778	chr15	25387185	25387186	rs4906947	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	15q11.2	NR	rs4906947-C	0.608	7E-7		0.017662238	[0.011-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
778	chr15	25396309	25396310	rs2739825	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs2739825-?	NR	2E-8				NR [NR]	N
778	chr15	25398141	25398142	rs2714720	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs2714720-?	NR	3E-8				NR [NR]	N
778	chr15	25398141	25398142	rs2714720	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs2714720-?	NR	3E-8				NR [NR]	N
778	chr15	25398141	25398142	rs2714720	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q11.2		rs2714720-?	NR	3E-8				NR [NR]	N
779	chr15	25490756	25490757	rs67659323	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	15q11.2	intergenic	rs67659323-C	0.96	3E-9	(YKL-40)	29117.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
780	chr15	25577170	25577171	rs186045664	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	15q11.2	NR	rs186045664-?	NR	5E-6		1.33303	[0.76-1.91] unit increase	NR [13958389] (imputed)	N
780	chr15	25602949	25602950	rs8025093	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q11.2	UBE3A	rs8025093-C	0.0030	4E-6	(BMD )	0.03	[NR] g/cm2 increase	Illumina [899892]	N
781	chr15	25772907	25772908	rs7402241	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	15q12	intergenic	rs7402241-T	0.04	5E-6		0.5	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
781	chr15	25784775	25784776	rs73371737	25713168	Leng S	2015-02-23	J Natl Cancer Inst	15q12 variants, sputum gene promoter hypermethylation, and lung cancer risk: a GWAS in smokers.	Gene methylation in lung tissue	1,163 European ancestry smoker individuals	718 European ancestry smoker individuals		UBE3A	rs73371737-A	0.11	3E-8		1.35	[1.21-1.50]	Illumina [1599980]	N
782	chr15	25826460	25826461	rs145738725	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	15q12	LOC105370737, ATP10A	rs145738725-A	0.01304	2E-6		14.46	[8.49-20.42] unit increase	Illumina [up to 4929806] (imputed)	N
782	chr15	25829196	25829197	rs72699765	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	15q12	AC124997.1	rs72699765-A	0.11	5E-7	(Hispanic)	0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [NR] (imputed)	N
782	chr15	25894657	25894658	rs6576443	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	15q12	ATP10A	rs6576443-A		6E-9	(EA)			Illumina [NR]	N
782	chr15	25912338	25912339	rs17636733	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	15q12	UBE3A	rs17636733-?	NR	2E-7	(recessive)			Affymetrix [361034]	N
782	chr15	25923486	25923487	rs2066710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs2066710-?	NR	1E-11				NR [~ 8900000] (imputed)	N
782	chr15	25930302	25930303	rs883496	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	15q12	ATP10A	rs883496-?	0.47	6E-9		23.44	unit decrease	Illumina [120975] (imputed)	N
782	chr15	25931264	25931265	rs10152552	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	15q12	ATP10A	rs10152552-?	0.47	6E-9		23.44	unit increase	Illumina [120975] (imputed)	N
783	chr15	25952888	25952889	rs2291354	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	15q12	NR	rs2291354-A	0.48	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr15	25962208	25962209	rs35256367	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	15q12	NR	rs35256367-?	NR	1E-8		0.08832679	[0.058-0.119] unit increase	Illumina [7519308] (imputed)	N
783	chr15	25975207	25975208	rs4906759	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	15q12	Intergenic	rs4906759-T	0.06	2E-7		0.55	[0.34-0.75] unit increase	NR [~ 38000000] (imputed)	N
783	chr15	26009239	26009240	rs6576456	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	15q12	ATP10A	rs6576456-?		8E-6	(endpoint 3, dominant)	2.4390244	[NR]	Illumina [> 750000]	N
784	chr15	26105601	26105602	rs10873612	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	15q12	ATP10A	rs10873612-C	0.40390000000000004	1E-9		0.1096	[0.075-0.145] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
784	chr15	26106256	26106257	rs12906552	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	15q12	ATP10A	rs12906552-T	0.250262	2E-8				Affymetrix, Illumina [NR] (imputed)	N
784	chr15	26120681	26120682	rs4906800	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	15q12		rs4906800-T	0.07	9E-9		0.24	[0.16-0.32] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
784	chr15	26145740	26145741	rs17116329	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q12	NR	rs17116329-?	NR	1E-7				Affymetrix [NR]	N
784	chr15	26159813	26159814	rs58321729	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	15q12		rs58321729-?	NR	4E-6		0.34	[0.19-0.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
784	chr15	26186928	26186929	rs146636817	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	15q12	RP11-1084I9.1	rs146636817-C	0.9969	2E-6		0.4722	[0.28-0.67] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr15	26238172	26238173	rs772219080	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	15q12	RP11-1084I9.1	rs772219080-A	0.9989	6E-7		1.3349	[0.81-1.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr15	26277544	26277545	rs4906844	21810643	Bakken TE	2011-08-01	Arch Gen Psychiatry	Association of genetic variants on 15q12 with cortical thickness and cognition in schizophrenia.	Cortical thickness	573 European ancestry cases, 481 European ancestry controls	NA	15q12	LOC100128714	rs4906844-?	NR	1E-8		0.07	[NR] mm decrease	Affymetrix [597198]	N
785	chr15	26288393	26288394	rs6576507	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	15q12	ATP10A	rs6576507-A	0.13	7E-6	(HOMA-IR)	13.0	[7.00 - 20.00] % increase	Affymetrix [872243]	N
785	chr15	26288393	26288394	rs6576507	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	15q12	ATP10A	rs6576507-A	0.13	4E-7	(Insulin)	14.0	[8.00-20.00] % increase	Affymetrix [872243]	N
785	chr15	26335539	26335540	rs4109610	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels	2,590 Han Chinese ancestry individuals	NA	15q12	NR	rs4109610-C	0.1766	7E-6		0.2917	NR unit decrease	Affymetrix [3101376] (imputed)	N
786	chr15	26391164	26391165	rs4906864	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q12	NR	rs4906864-?	NR	4E-6				Affymetrix [NR]	N
786	chr15	26424046	26424047	rs547843	22832964	David SP	2012-05-22	Transl Psychiatry	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NA	15q12	LOC503519	rs547843-C	0.65	6E-7	(CPD)	0.035	[0.021-0.049] unit decrease	Affymetrix, Illumina [~ 2900000] (imputed)	N
787	chr15	26542127	26542128	rs112235625	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT10	5,355 Icelandic ancestry individuals	NA	15q12		rs112235625-C	0.009724	5E-17		0.187961	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
787	chr15	26577346	26577347	rs6576560	33436679	Chou YC	2021-01-12	Sci Rep	Integration of genome-wide association study and expression quantitative trait locus mapping for identification of endometriosis-associated genes.	Endometriosis	126 Taiwanese ancestry cases, 96 Taiwanese ancestry controls	133 Taiwanese ancestry cases, 75 Taiwanese ancestry controls	15q12	NR	rs6576560-C	0.5059	1E-5		1.92	[1.451-2.541]	Affymetrix [4566885] (imputed)	N
787	chr15	26599132	26599133	rs11858919	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q12	NR	rs11858919-T	NR	6E-6	(Hispanic)	7.59	[4.35-10.83] unit increase	Affymetrix [14000000] (imputed)	N
787	chr15	26607404	26607405	rs11161294	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q12	ATP10A, GABRB3	rs11161294-?		4E-11				Affymetrix, Illumina [NR] (imputed)	N
788	chr15	26683298	26683299	rs111355438	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q12	NR	rs111355438-?	NR	5E-9				Illumina [7760689] (imputed)	N
788	chr15	26702985	26702986	rs149446621	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q12	AC009878.2	rs149446621-T	0.0133	6E-6		0.1542	[0.087-0.221] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
788	chr15	26722015	26722016	rs79252495	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q12	intergenic	rs79252495-A	0.032	6E-8		4.25	[2.42-7.48]	Illumina [1556551]	N
789	chr15	26804130	26804131	rs61996546	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q12	GABRB3	rs61996546-?		7E-6				Illumina [4322238] (imputed)	N
789	chr15	26804130	26804131	rs61996546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q12		rs61996546-T	0.5094	2E-11	(conditional-joint)	0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
789	chr15	26804130	26804131	rs61996546	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	15q12	GABRB3, GABRG3	rs61996546-C	NR	3E-6	(PhysVAS)	0.78	[0.47-1.09] unit decrease	Illumina [586062]	N
789	chr15	26810688	26810689	rs1432007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q12	Intergenic	rs1432007-A	0.5042	1E-8	(MTAG)	0.0094	[0.0063-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
789	chr15	26810688	26810689	rs1432007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q12	Intergenic	rs1432007-A	0.5081	6E-13	(MTAG)	0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
789	chr15	26813136	26813137	rs7167688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q12		rs7167688-T	0.4917	2E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
789	chr15	26824161	26824162	rs17560619	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q12	NR	rs17560619-?	NR	2E-6				Affymetrix [NR]	N
790	chr15	26873821	26873821	rs112945849	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	15q12	GABRB3	rs112945849-?	NR	5E-6		2.42		Illumina [6778521] (imputed)	N
790	chr15	26973085	26973086	rs8043440	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA		GABRB3	rs8043440-?	0.1695	2E-6	(SRM)			Illumina [475971]	N
790	chr15	26977580	26977581	rs8036016	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q12	GABRA5	rs8036016-?	NR	6E-6	(PC 32:0)	0.17466067	[0.099-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
790	chr15	26981845	26981846	rs7179279	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	15q12	GABRB3	rs7179279-G	0.81	3E-6		0.11	[0.071-0.149] unit increase	Illumina [NR] (imputed)	N
790	chr15	26993658	26993659	rs8035503	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	15q12	NR	rs8035503-A	0.91	4E-6	(AA)	6.7	[3.98-9.42] bpm decrease	Illumina [at least 1100000] (imputed)	N
791	chr15	27001486	27001487	rs7170907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q12		rs7170907-T	NR	6E-12		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
791	chr15	27004094	27004095	rs11161335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q12		rs11161335-A	NR	5E-12		0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
791	chr15	27004094	27004095	rs11161335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q12		rs11161335-?	NR	4E-8				NR [~ 8900000] (imputed)	N
791	chr15	27012140	27012141	rs3212335	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	15q12	GABRB3	rs3212335-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
791	chr15	27030775	27030776	rs185226189	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	15q12	NR	rs185226189-G		9E-6		0.4411	[0.25-0.64] SD units increase	NR [10700000] (imputed)	N
791	chr15	27035093	27035094	rs7168574	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q12	NR	rs7168574-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
791	chr15	27038491	27038492	rs12440086	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q12	GABRB3, GABRA5	rs12440086-A	0.54	3E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
792	chr15	27137582	27137583	rs140183574	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	15q12	GABRB3, GABRA5	rs140183574-C	0.83	2E-6		0.41	[0.23-0.59] unit increase	Illumina [7597379] (imputed)	N
792	chr15	27156537	27156545	rs781387485	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	15q12	GABRA5	rs781387485-?	NR	3E-6		1.11	[1.06-1.16]	NR [7424691] (imputed)	N
792	chr15	27185573	27185574	rs146538984	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q12	GABRB3	rs146538984-T	0.0138291363668694	4E-6	(G_Butyrivibrio_HB)	1.22526	[0.71-1.75] unit increase	Illumina [7711310] (imputed)	N
792	chr15	27228345	27228346	rs1432133	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	15q12	intergenic	rs1432133-T	NR	7E-9		1.02	[NR]	NR [352000]	N
792	chr15	27230815	27230816	rs17561924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q12		rs17561924-T	0.4527	2E-12	(conditional-joint)	0.0099	[0.0072-0.0126] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
792	chr15	27231450	27231451	rs117020886	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	15q12		rs117020886-?	NR	3E-8		2.0669	[1.34-2.8] unit increase	Affymetrix [NR] (imputed)	N
792	chr15	27231949	27231950	rs116046250	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	15q12	GABRG3	rs116046250-G	0.046	9E-7		2.95	[1.92-4.54]	Illumina [11083029] (imputed)	N
792	chr15	27234267	27234268	rs11635966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q12		rs11635966-?	NR	4E-10				NR [~ 8900000] (imputed)	N
792	chr15	27256020	27256021	rs891793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q12		rs891793-C	0.5403	2E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
792	chr15	27256020	27256021	rs891793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q12	Intergenic	rs891793-C	0.5403	4E-15	(MTAG)	0.0103	[0.0078-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr15	27256116	27256117	rs891792	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q12	Intergenic	rs891792-A	0.4406	3E-12	(MTAG)	0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr15	27261646	27261647	rs2195817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q12	Intergenic	rs2195817-A	0.4352	2E-11	(MTAG)	0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
793	chr15	27277400	27277401	rs6606859	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q12	GABRG3	rs6606859-?	NR	2E-7		0.089	[0.016-0.162] unit increase	Illumina [at least 13000000] (imputed)	N
793	chr15	27310547	27310548	rs112401219	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	15q12	GABRG3	rs112401219-G	0.9734	8E-6		0.0227	[0.013-0.033] unit increase	Affymetrix [~ 7740000] (imputed)	N
793	chr15	27323198	27323199	rs7179575	25713168	Leng S	2015-02-23	J Natl Cancer Inst	15q12 variants, sputum gene promoter hypermethylation, and lung cancer risk: a GWAS in smokers.	Gene methylation in lung tissue	1,163 European ancestry smoker individuals	718 European ancestry smoker individuals	15q12	GABRG3	rs7179575-C	0.64	4E-6		1.2	[1.11-1.30]	Illumina [1599980]	N
793	chr15	27329227	27329228	rs10400919	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	15q12		rs10400919-?	NR	6E-6	(clearcell)	1.55		Illumina [11595112] (imputed)	N
793	chr15	27340048	27340049	rs7169601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs7169601-?	NR	4E-8				NR [~ 8900000] (imputed)	N
793	chr15	27359562	27359563	rs4410042	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (aggressiveness)	899 Japanese ancestry female cases, 4,835 Japanese ancestry female controls	1,030 Japanese ancestry female cases, 4,584 Japanese ancestry female controls	15q12	NR	rs4410042-G	0.345607582	4E-6		0.17629494	[0.1-0.25] unit decrease	Affymetrix [536506]	N
793	chr15	27376622	27376623	rs2192224	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	15q12	GABRG3, LOC101928869	rs2192224-T	0.13	6E-6		0.048	[0.026-0.07] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
794	chr15	27398498	27398499	rs184405367	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	15q12	GABRG3-AS1, GABRG3	rs184405367-?		4E-9				Illumina [9499600] (imputed)	N
794	chr15	27415212	27415213	rs61435271	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		15q12	NR	rs61435271-A	NR	9E-6		1.2291112	[1.12-1.35]	Affymetrix [5734850] (imputed)	N
794	chr15	27507772	27507773	rs17137734	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	15q12	GABRG3	rs17137734-T	NR	9E-6		0.0893	[0.049-0.129] mm increase	Illumina [1704858] (imputed)	N
794	chr15	27510673	27510674	rs7495517	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q12	GABRG3	rs7495517-?	NR	8E-6		0.158	[0.042-0.274] unit decrease	Illumina [at least 13000000] (imputed)	N
795	chr15	27587763	27587764	rs36147593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs36147593-?	NR	1E-22				NR [~ 8900000] (imputed)	N
795	chr15	27638286	27638287	rs140780521	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	15q12	GABRG3	rs140780521-T	0.9976	6E-6		0.5923	[0.34-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
795	chr15	27639670	27639671	rs8041104	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	15q12		rs8041104-?	NR	4E-6		0.04	[0.022-0.058] unit increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr15	27677967	27677968	rs4633669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q12	Intergenic	rs4633669-T	0.6818	3E-8	(MTAG)	0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
796	chr15	27695708	27695709	rs62003775	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q12	GABRG3	rs62003775-A	0.791	1E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
796	chr15	27701577	27701578	rs4595752	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	15q12	NR	rs4595752-G	0.520638	5E-6		4.5834	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
796	chr15	27702946	27702947	rs34078361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q12	Intergenic	rs34078361-A	0.7986	2E-10	(MTAG)	0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
796	chr15	27703714	27703715	rs7174138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q12	Intergenic	rs7174138-A	0.8057	6E-11	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
796	chr15	27703714	27703715	rs7174138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q12	Intergenic	rs7174138-A	0.8057	1E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
796	chr15	27712643	27712644	rs74006954	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		15q12	GABRG3	rs74006954-?	0.03	3E-7		0.28	unit decrease	Illumina [NR] (imputed)	N
796	chr15	27735952	27735953	rs4555109	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	15q12	NR	rs4555109-?	NR	1E-22		0.33	[0.25-0.41] unit decrease	Illumina [at least 830937] (imputed)	N
796	chr15	27746287	27746288	rs187453635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs187453635-?	NR	5E-15				NR [~ 8900000] (imputed)	N
796	chr15	27746338	27746339	rs192744896	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	15q12	NR	rs192744896-?	0.03	4E-7		3.72	[2.23-6.18]	Affymetrix, Illumina [~ 6000000] (imputed)	N
796	chr15	27756647	27756648	rs117755454	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	15q12		rs117755454-?	NR	6E-7		4.51662		NR [NR] (imputed)	N
797	chr15	27838596	27838597	rs3098527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q12	Intergenic	rs3098527-T	0.5261	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
797	chr15	27838596	27838597	rs3098527	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q12	Intergenic	rs3098527-T	0.5205	1E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
797	chr15	27847047	27847048	rs11858071	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q12	NR	rs11858071-?	NR	6E-9				Illumina [7760689] (imputed)	N
797	chr15	27849634	27849635	rs558184979	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	15q12	RP11-30G8.2	rs558184979-A	0.0012	4E-6		1.4178	[0.81-2.02] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr15	27858407	27858408	rs3098576	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q12	GABRG3, OCA2	rs3098576-T	NR	9E-9		0.182124	[0.12-0.24] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
797	chr15	27872234	27872235	rs3097435	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	15q12	NR	rs3097435-T	NR	7E-7				Affymetrix [at least 811691] (imputed)	N
797	chr15	27882961	27882962	rs1077037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs1077037-?	NR	3E-32				NR [~ 8900000] (imputed)	N
797	chr15	27889033	27889034	rs186861309	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs186861309-G	0.001429	2E-12		0.44	[0.32-0.56] unit decrease	NR [11842647] (imputed)	N
797	chr15	27914850	27914851	rs144382691	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q12		rs144382691-C	0.002505	3E-13		0.51	[0.37-0.65] unit increase	NR [11842647] (imputed)	N
798	chr15	27922950	27922951	rs184469430	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs184469430-T	0.003937	8E-10		0.23	[0.16-0.3] unit decrease	NR [11842647] (imputed)	N
798	chr15	27929090	27929091	rs904372	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	15q12	GABRG3	rs904372-?	0.6117	8E-7		4.830918		Affymetrix [757439]	N
798	chr15	27929146	27929147	rs745331	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	15q12	NR	rs745331-G	NR	7E-6		0.0792	[0.045-0.114] SD units increase	NR [10700000] (imputed)	N
798	chr15	27932023	27932024	rs138766348	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs138766348-G	0.005238	5E-11		0.19	[0.13-0.25] unit increase	NR [11842647] (imputed)	N
798	chr15	27946225	27946226	rs139029488	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q12	OCA2	rs139029488-C	0.006794	4E-20		1.52	NR	Affymetrix [9154080] (imputed)	N
798	chr15	27948276	27948277	rs7182551	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q12		rs7182551-A	0.007349	3E-11		0.18	[0.13-0.23] unit decrease	NR [11842647] (imputed)	N
798	chr15	27948276	27948277	rs7182551	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs7182551-A	0.005891	3E-20		0.25	[0.2-0.3] unit increase	NR [11842647] (imputed)	N
798	chr15	27949622	27949623	rs56302314	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q12		rs56302314-A	0.004991	3E-10		0.32	[0.22-0.42] unit decrease	NR [11842647] (imputed)	N
798	chr15	27969565	27969566	rs4778174	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	15q12	OCA2	rs4778174-?	NR	1E-6		1.8681113	[1.45-2.4]	Illumina [5407269] (imputed)	N
798	chr15	27975908	27975909	rs534607605	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs534607605-T	0.002363	7E-13		0.35	[0.25-0.45] unit decrease	NR [11842647] (imputed)	N
798	chr15	27975908	27975909	rs534607605	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q12		rs534607605-T	0.001941	4E-11		0.5	[0.35-0.65] unit increase	NR [11842647] (imputed)	N
798	chr15	27985207	27985208	rs537407718	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q12		rs537407718-C	0.001779	5E-14		0.36	[0.27-0.45] unit increase	NR [11842647] (imputed)	N
798	chr15	27988339	27988340	rs4423373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q12		rs4423373-A	0.5386	6E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr15	27988339	27988340	rs4423373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q12	Intergenic	rs4423373-A	0.5386	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
798	chr15	27997246	27997247	rs17565841	19772629	Latourelle JC	2009-09-22	BMC Med Genet	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	15q12	OCA2	rs17565841-A	NR	3E-6		2.84	[NR] years decrease	Illumina, Perlegen [1861750] (imputed)	N
798	chr15	27998234	27998235	rs73370335	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q12	NR	rs73370335-C	0.01394	2E-10	(CES2)	0.4059	NR unit increase	Illumina [1671387] (imputed)	N
798	chr15	28012153	28012154	rs75236462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q12		rs75236462-?	NR	3E-28				NR [~ 8900000] (imputed)	N
798	chr15	28041903	28041904	rs4238492	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q12		rs4238492-A	NR	1E-8		0.239853	[0.16-0.32] decrease	Affymetrix, Illumina [32876187] (imputed)	N
798	chr15	28044541	28044542	rs11074306	28781888	Mobuchon L	2017-03-10	NPJ Genom Med	A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus.	Uveal melanoma	259 European ancestry cases, 401 European ancestry controls	276 French cases, 184 European ancestry controls	15q12	HERC2, OCA2	rs11074306-A	0.51	5E-7		1.85	[1.09-3.23]	Illumina [866782]	N
798	chr15	28045964	28045964	rs36031742	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	15q13.1	NR	rs36031742-CA	0.3988	3E-6		0.1475	[0.086-0.209] unit decrease	Illumina [10677593] (imputed)	N
798	chr15	28047492	28047493	rs78050080	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs78050080-G	0.001893	4E-10		0.3	[0.21-0.39] unit increase	NR [11842647] (imputed)	N
799	chr15	28089295	28089296	rs182498200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	15q13.1		rs182498200-?	NR	7E-9				NR [~ 8900000] (imputed)	N
799	chr15	28092599	28092600	rs8029469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs8029469-?	NR	8E-210				NR [~ 8900000] (imputed)	N
799	chr15	28093433	28093434	rs924318	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs924318-A	0.3417	7E-29		1.097	NR	Affymetrix [9154080] (imputed)	N
799	chr15	28101135	28101136	rs191549258	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs191549258-T	0.005526	5E-18		0.24	[0.19-0.29] unit increase	NR [11842647] (imputed)	N
799	chr15	28116315	28116316	rs121918167	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs121918167-A	1.97E-4	2E-33		10.35	NR	Affymetrix [9154080] (imputed)	N
799	chr15	28147205	28147206	rs2703978	34155719	Margaritte-Jeannin P	2021-06-22	Clin Exp Allergy	Identification of OCA2 as a novel locus for the co-morbidity of asthma-plus-eczema.	Asthma and eczema	1,208 European ancestry cases with both asthma and eczema, 7,599 European ancestry controls with neither asthma nor eczema	NA	15q13.1	OCA4, GABRG3, HERC2	rs2703978-T	0.278	2E-6		0.27	[0.16-0.38] unit increase	Illumina [NR] (imputed)	N
799	chr15	28163862	28163863	rs116963539	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs116963539-G	0.001116	1E-36		1.31	[1.11-1.51] unit increase	NR [11842647] (imputed)	N
799	chr15	28179878	28179879	rs1448489	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	OCA2	rs1448489-C	0.05553	2E-11		1.205	NR	Affymetrix [9154080] (imputed)	N
799	chr15	28180199	28180200	rs2703954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs2703954-?	NR	1E-300				NR [~ 8900000] (imputed)	N
800	chr15	28189003	28189004	rs7169225	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	OCA2	rs7169225-G	0.2731	4E-9		1.147	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28195927	28195928	rs147750878	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs147750878-A	0.009653	3E-9		0.14	[0.095-0.185] unit decrease	NR [11842647] (imputed)	N
800	chr15	28196144	28196145	rs76930569	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (b* coordinate)	377 East Asian ancestry individuals	NA	15q13.1	OCA2	rs76930569-T	0.623	5E-12		0.526823	[0.38-0.67] unit increase	Illumina [at least 520076] (imputed)	N
800	chr15	28196144	28196145	rs76930569	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (a* coordinate)	377 East Asian ancestry individuals	NA	15q13.1	OCA2	rs76930569-T	0.622807	9E-11		0.497	[0.35-0.64] unit increase	Illumina [at least 520076] (imputed)	N
800	chr15	28196820	28196821	rs7173419	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	OCA2	rs7173419-T	NR	1E-7	(Brown eye color)	0.33	[0.21-0.45] unit increase	Affymetrix, Illumina [2469762] (imputed)	N
800	chr15	28197036	28197037	rs1800414	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	15q13.1	OCA2	rs1800414-C	0.618641	2E-6		0.375176	[0.22-0.53] unit increase	Illumina [at least 520076] (imputed)	N
800	chr15	28200407	28200408	rs7170989	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q13.1		rs7170989-T	NR	7E-10		0.29718	[0.2-0.39] decrease	Affymetrix, Illumina [32876187] (imputed)	N
800	chr15	28205563	28205564	rs4778214	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	15q13.1	NR	rs4778214-?		9E-6	(AA)			Illumina [up to 524000]	N
800	chr15	28206622	28206623	rs141514981	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	15q13.1	RPL5P32	rs141514981-T	0.0306	5E-8		1.1664529	NR	Affymetrix, Illumina [NR] (imputed)	N
800	chr15	28207954	28207955	rs111972832	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs111972832-A	0.002619	1E-12		0.5	[0.36-0.64] unit decrease	NR [11842647] (imputed)	N
800	chr15	28211757	28211758	rs4778218	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	15q13.1		rs4778218-G	0.834	1E-582		0.520119	[0.5-0.54] unit decrease	Illumina [11532091] (imputed)	N
800	chr15	28213849	28213850	rs4778219	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q13.1	OCA2	rs4778219-?	NR	3E-9	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
800	chr15	28213849	28213850	rs4778219	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs4778219-?	NR	4E-11	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
800	chr15	28213849	28213850	rs4778219	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q13.1	OCA2	rs4778219-?	NR	4E-7	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
800	chr15	28213923	28213924	rs72625132	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs72625132-C	0.1125	2E-49		1.225	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28224930	28224931	rs142936968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q13.1	OCA2	rs142936968-T	0.993	4E-6	(AA)	0.111	unit increase	Illumina [NR] (imputed)	N
800	chr15	28228528	28228529	rs121918170	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs121918170-C	0.001026	1E-107		6.071	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28228552	28228553	rs74653330	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs74653330-T	6.18E-4	8E-36		1.69	[1.43-1.95] unit increase	NR [11842647] (imputed)	N
800	chr15	28228552	28228553	rs74653330	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index b* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	15q13.1	OCA2	rs74653330-T	0.068	1E-71		0.97	unit decrease	Illumina [5032876] (imputed)	N
800	chr15	28228552	28228553	rs74653330	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index L* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	15q13.1	OCA2	rs74653330-T	0.068	2E-48		1.09	unit increase	Illumina [5032876] (imputed)	N
800	chr15	28228552	28228553	rs74653330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	15q13.1		rs74653330-T	NR	7E-15		0.6268	[0.47-0.78] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
800	chr15	28228552	28228553	rs74653330	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Sunburn type	1,108 Japanese ancestry individuals	NA	15q13.1		rs74653330-T	0.08	1E-12		0.344	[0.25-0.44] unit decrease	Illumina [6258233] (imputed)	N
800	chr15	28228552	28228553	rs74653330	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs74653330-T	6.52E-4	3E-84		9.295	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28230246	28230247	rs121918166	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs121918166-T	0.007266	5E-296		1.48	[1.4-1.56] unit increase	NR [11842647] (imputed)	N
800	chr15	28230246	28230247	rs121918166	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	OCA2	rs121918166-T	0.009077	1E-31		3.255	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28230246	28230247	rs121918166	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs121918166-T	0.009077	2E-308		5.937	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28230317	28230318	rs1800407	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	15q13.1		rs1800407-?	NR	4E-6		1.21529	[1.13-1.3]	NR [674885]	N
800	chr15	28230317	28230318	rs1800407	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	15q13.1	OCA2	rs1800407-T	NR	4E-10	(female)	1.058	[1.04-1.08]	Affymetrix [9869154] (imputed)	N
800	chr15	28230317	28230318	rs1800407	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	15q13.1	NR	rs1800407-T	0.08	3E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [9231066] (imputed)	N
800	chr15	28230317	28230318	rs1800407	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	15q13.1	NR	rs1800407-T	0.08	4E-8		0.36	[0.22-0.5] unit decrease	Affymetrix [9231066] (imputed)	N
800	chr15	28230317	28230318	rs1800407	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	15q13.1	NR	rs1800407-T	0.08	3E-12		0.6	[0.42-0.78] unit decrease	Affymetrix [9231066] (imputed)	N
800	chr15	28230317	28230318	rs1800407	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	15q13.1		rs1800407-T	NR	5E-8		1.182872	NR	Affymetrix [7846216] (imputed)	N
800	chr15	28230317	28230318	rs1800407	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	15q13.1	OCA2	rs1800407-T	0.07	5E-14		0.16	[0.12-0.2] unit increase	NR [13607369] (imputed)	N
800	chr15	28230317	28230318	rs1800407	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	15q13.1	OCA2	rs1800407-?	0.086	1E-10		1.1136155	[1.08-1.15]	Affymetrix [NR] (imputed)	N
800	chr15	28230317	28230318	rs1800407	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	15q13.1	RPL5P32	rs1800407-T	0.069048	4E-14		1.22	[1.16-1.27]	Affymetrix, Illumina [up to 9061544] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	1E-12				Illumina [181139] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	7E-9				Illumina [8896142] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	1E-7				Illumina [8896142] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (hue)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	5E-6				Illumina [8896142] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	1E-19	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800407-?	NR	6E-17	(conditional on rs16891982, rs12203592, rs10809826, rs1800404, rs12913832 and rs1426654)			Illumina [8896142] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q13.1	OCA2	rs1800407-?	NR	4E-21		1.1367	[0.9-1.38] unit increase	Affymetrix [11100000] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	OCA2	rs1800407-T	0.08559	2E-30		1.296	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs1800407-T	0.08538	2E-81		1.399	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	OCA2	rs1800407-?		3E-8	(Skin sensitivity to sun)	0.2347	[0.15-0.32] unit decrease	Illumina [9499600] (imputed)	N
800	chr15	28230317	28230318	rs1800407	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	OCA2	rs1800407-?		1E-8	(Phototype score)	2.266	[1.48-3.05] unit decrease	Illumina [9499600] (imputed)	N
800	chr15	28230317	28230318	rs1800407	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	15q13.1	OCA2	rs1800407-T	NR	2E-31		0.175	[0.075-0.275] unit increase	Affymetrix [8351141] (imputed)	N
800	chr15	28230317	28230318	rs1800407	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	15q13.1	OCA2	rs1800407-T	0.07	9E-9		1.2		Affymetrix, Illumina [at least 560000] (imputed)	N
800	chr15	28230317	28230318	rs1800407	26567291	Jensen RA	2015-11-13	Circ Cardiovasc Genet	Novel Genetic Loci Associated With Retinal Microvascular Diameter.	Central retinal vein equivalent	14,740 European ancestry individuals, 5,113 Asian ancestry individuals, 3,345 African American individuals, 1,077 Hispanic individuals	5,472 European ancestry individuals	15q13.1	OCA2	rs1800407-T	NR	3E-8		0.11	[0.071-0.149] unit decrease	Illumina [223566]	N
800	chr15	28230317	28230318	rs1800407	26567291	Jensen RA	2015-11-13	Circ Cardiovasc Genet	Novel Genetic Loci Associated With Retinal Microvascular Diameter.	Central retinal arteriolar equivalent	14,740 European ancestry individuals, 5,113 Asian ancestry individuals, 3,345 African American individuals, 1,077 Hispanic individuals	5,472 European ancestry individuals	15q13.1	OCA2	rs1800407-T	NR	7E-12		0.14	[0.1-0.18] unit decrease	Illumina [240931]	N
800	chr15	28230377	28230378	rs117886461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	15q13.1		rs117886461-?	NR	7E-25				NR [~ 8900000] (imputed)	N
800	chr15	28232736	28232737	rs112244493	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Iris color	1,108 Japanese ancestry individuals	NA	15q13.1		rs112244493-G	0.313	7E-18		0.263	[0.2-0.32] unit increase	Illumina [6258233] (imputed)	N
800	chr15	28235772	28235773	rs1800404	33600456	Batai K	2021-02-18	PLoS Genet	Genetic loci associated with skin pigmentation in African Americans and their effects on vitamin D deficiency.	Skin reflectance (Melanin index)	395 African American individuals	681 African American individuals	15q13.1	OCA2	rs1800404-T	0.22	5E-8		0.02	NR unit decrease	Affymetrix, Illumina [7169107] (imputed)	N
800	chr15	28235772	28235773	rs1800404	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	OCA2	rs1800404-T	NR	9E-6		0.137	[0.076-0.198] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
800	chr15	28235772	28235773	rs1800404	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800404-?	NR	4E-18				Illumina [181139] (imputed)	N
800	chr15	28235772	28235773	rs1800404	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800404-?	NR	5E-11				Illumina [8896142] (imputed)	N
800	chr15	28235772	28235773	rs1800404	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800404-?	NR	1E-6				Illumina [8896142] (imputed)	N
800	chr15	28235772	28235773	rs1800404	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800404-?	NR	5E-19				Illumina [8896142] (imputed)	N
800	chr15	28235772	28235773	rs1800404	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q13.1	OCA2	rs1800404-?	NR	1E-11				Illumina [8896142] (imputed)	N
800	chr15	28241019	28241020	rs4778224	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	OCA2	rs4778224-?	NR	3E-8		1.129178	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28241019	28241020	rs4778224	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs4778224-?	NR	3E-29		1.1809163	NR	Affymetrix [9154080] (imputed)	N
800	chr15	28268989	28268990	rs749846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs749846-?	NR	1E-300				NR [~ 8900000] (imputed)	N
800	chr15	28283440	28283441	rs1448484	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	OCA2	rs1448484-G	NR	4E-10		0.212961	[0.15-0.28] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
800	chr15	28291906	28291907	rs147065959	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs147065959-C	0.00805	1E-12		0.29	[0.21-0.37] unit decrease	NR [11842647] (imputed)	N
800	chr15	28293862	28293863	rs554128876	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs554128876-G	9.669E-4	2E-21		0.6	[0.48-0.72] unit increase	NR [11842647] (imputed)	N
800	chr15	28293862	28293863	rs554128876	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs554128876-G	0.001345	5E-11		0.67	[0.47-0.87] unit decrease	NR [11842647] (imputed)	N
800	chr15	28306055	28306056	rs534277384	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs534277384-C	5.633E-4	4E-12		0.57	[0.41-0.73] unit increase	NR [11842647] (imputed)	N
800	chr15	28310561	28310562	rs6497257	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q13.1		rs6497257-T	NR	3E-17		0.417711	[0.32-0.51] increase	Affymetrix, Illumina [32876187] (imputed)	N
801	chr15	28317439	28317440	rs181507749	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs181507749-G	0.001661	5E-16		0.47	[0.36-0.58] unit decrease	NR [11842647] (imputed)	N
801	chr15	28318851	28318852	rs6497261	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs6497261-C	0.002325	2E-9		0.29	[0.2-0.38] unit decrease	NR [11842647] (imputed)	N
801	chr15	28318851	28318852	rs6497261	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs6497261-C	0.001705	1E-20		0.45	[0.35-0.55] unit increase	NR [11842647] (imputed)	N
801	chr15	28318851	28318852	rs6497261	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs6497261-C	0.002196	8E-11		0.51	[0.36-0.66] unit decrease	NR [11842647] (imputed)	N
801	chr15	28323769	28323770	rs7179994	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	15q13.1	NR	rs7179994-?	NR	4E-6		0.0782	[0.045-0.111] unit increase	Illumina [at least 560000] (imputed)	N
801	chr15	28324911	28324912	rs116978932	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	OCA2	rs116978932-A	0.05458	8E-9		1.139	NR	Affymetrix [9154080] (imputed)	N
801	chr15	28334647	28334648	rs140500404	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs140500404-T	0.003982	7E-104		0.66	[0.6-0.72] unit increase	NR [11842647] (imputed)	N
801	chr15	28334888	28334889	rs72714121	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		OCA2	rs72714121-T	NR	3E-17		1.05	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
801	chr15	28335819	28335820	rs4778138	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	15q13.1	NR	rs4778138-?	0.143	2E-14				NR [13607369] (imputed)	N
801	chr15	28335819	28335820	rs4778138	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	15q13.1	OCA2	rs4778138-?	0.85	2E-11		1.1904762	[NR]	Illumina [at least 560000] (imputed)	N
801	chr15	28335819	28335820	rs4778138	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	15q13.1	OCA2	rs4778138-G	0.16	2E-11		0.17	[NR] unit decrease	Affymetrix, Illumina [at least 1569314] (imputed)	N
801	chr15	28344237	28344238	rs7495174	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Red vs non-red hair color	181 European ancestry red hair individuals, 6,910 European ancestry non-red hair individuals	NA	15q13.1	OCA2	rs7495174-?	0.986	2E-6		1.4411299	[0.27-2.61]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
801	chr15	28344237	28344238	rs7495174	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	15q13.1	OCA2	rs7495174-?	0.986	3E-6		3.1094527	[2.63-3.59]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
801	chr15	28344237	28344238	rs7495174	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	15q13.1	OCA2	rs7495174-?	0.986	2E-6		2.8216703	[2.40-3.25]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
801	chr15	28344237	28344238	rs7495174	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	15q13.1	OCA2	rs7495174-?	0.014	9E-7		3.5485	[3.04-4.05]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
801	chr15	28346510	28346511	rs4778139	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs4778139-C	0.005513	6E-201		0.76	[0.71-0.81] unit increase	NR [11842647] (imputed)	N
801	chr15	28356858	28356859	rs1129038	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	15q13.1		rs1129038-C	NR	3E-52		0.889691	[0.77-1] decrease	Affymetrix, Illumina [32876187] (imputed)	N
801	chr15	28356858	28356859	rs1129038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	15q13.1		rs1129038-T	NR	2E-14		0.0821	[0.061-0.103] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
801	chr15	28356858	28356859	rs1129038	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	15q13.1		rs1129038-C	NR	6E-12		0.56	[0.48-0.66]	Illumina [7488175] (imputed)	N
801	chr15	28356858	28356859	rs1129038	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	15q13.1		rs1129038-T	0.734	2E-28539	(EA)	2.60527	[2.59-2.62] unit decrease	Illumina [11532091] (imputed)	N
801	chr15	28356858	28356859	rs1129038	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	HERC2	rs1129038-?	0.7842	3E-113		1.4060742	NR	Affymetrix [9154080] (imputed)	N
801	chr15	28356858	28356859	rs1129038	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		15q13.1	HERC2	rs1129038-C	0.215	2E-11		0.023	[0.015-0.031] dioptres decrease	NR [5900115] (imputed)	N
801	chr15	28356858	28356859	rs1129038	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		15q13.1	HERC2	rs1129038-C	0.215	1E-15		0.028	[0.022-0.034] dioptres decrease	NR [5901671] (imputed)	N
801	chr15	28356858	28356859	rs1129038	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1129038-?		3E-11	(Skin sensitivity to sun (high to low))	0.5341482	[0.37-0.7] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28356858	28356859	rs1129038	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1129038-?		6E-49	(Hair color (light))	1.4185499	[1.23-1.61] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28356858	28356859	rs1129038	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	15q13.1	HERC2	rs1129038-T	NR	4E-12		0.156778	[0.11-0.2] unit increase	Illumina [at least 950000] (imputed)	N
801	chr15	28356858	28356859	rs1129038	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	15q13.1	HERC2, OCA2	rs1129038-C	0.27	4E-8		1.22	[NR]	Illumina [495821]	N
801	chr15	28363487	28363488	rs116879078	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs116879078-T	0.01027	1E-115		0.55	[0.5-0.6] unit decrease	NR [11842647] (imputed)	N
801	chr15	28363487	28363488	rs116879078	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs116879078-T	0.005774	5E-251		0.83	[0.78-0.88] unit increase	NR [11842647] (imputed)	N
801	chr15	28363487	28363488	rs116879078	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs116879078-T	0.009314	1E-123		0.97	[0.89-1.05] unit decrease	NR [11842647] (imputed)	N
801	chr15	28363487	28363488	rs116879078	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	15q13.1		rs116879078-T	0.008044	7E-58		1.01	[0.89-1.13] unit increase	NR [11842647] (imputed)	N
801	chr15	28365617	28365618	rs12913832	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q13.1		rs12913832-G	0.7869	6E-80		0.15454	[0.14-0.17] unit decrease	Affymetrix [15580782] (imputed)	N
801	chr15	28365617	28365618	rs12913832	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q13.1		rs12913832-A	NR	5E-141		1.19021	[1.1-1.28] decrease	Affymetrix, Illumina [32876187] (imputed)	N
801	chr15	28365617	28365618	rs12913832	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	15q13.1		rs12913832-?	NR	1E-6		0.936885	[0.91-0.96]	NR [685523]	N
801	chr15	28365617	28365618	rs12913832	32741009	Guenther F	2020-08-02	Genet Epidemiol	Chances and challenges of machine learning-based disease classification in genetic association studies illustrated on age-related macular degeneration.	Age-related macular degeneration	3,544 European ancestry cases, 44,521 European ancestry controls	NA	15q13.1	HERC2	rs12913832-A	0.227	4E-16		0.22954147	[0.17-0.28] unit increase	Affymetrix [11567158] (imputed)	N
801	chr15	28365617	28365618	rs12913832	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	15q13.1	HERC2	rs12913832-A	0.334986	2E-14				Affymetrix, Illumina [NR] (imputed)	N
801	chr15	28365617	28365618	rs12913832	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	15q13.1	HERC2	rs12913832-A	0.334986	2E-9237				Affymetrix, Illumina [NR] (imputed)	N
801	chr15	28365617	28365618	rs12913832	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	15q13.1	HERC2	rs12913832-G	0.665	2E-23		1.128923	NR	Affymetrix, Illumina [NR] (imputed)	N
801	chr15	28365617	28365618	rs12913832	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	15q13.1	HERC2	rs12913832-A	0.21	9E-7				Affymetrix, Illumina [8002429] (imputed)	N
801	chr15	28365617	28365618	rs12913832	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	15q13.1	HERC2, OCA2	rs12913832-G	NR	3E-8		0.21	[0.13-0.29] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	1E-200				Illumina [181139] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	1E-17				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	8E-105				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	6E-7				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (hue)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	1E-92				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	1E-200				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q13.1	HERC2	rs12913832-?	NR	1E-200				Illumina [8896142] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q13.1	HERC2	rs12913832-?	NR	2E-308		2.2291574	NR	Affymetrix [9154080] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	HERC2	rs12913832-?	NR	2E-308		4.6904316	NR	Affymetrix [9154080] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	15q13.1	HERC2	rs12913832-A	NR	3E-8		1.0869565	[1.05-1.12]	NR [5921785] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		9E-13	(Skin sensitivity to sun phototype score)	0.6038	[0.44-0.77] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		8E-132	(Fitzpatrick phototype score)	0.3257	[0.3-0.35] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		5E-14	(Skin sensitivity to sun)	0.2014	[0.15-0.25] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		3E-27	(Skin color)	0.1766	[0.14-0.21] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		2E-26	(Skin color phototype score)	0.8599	[0.7-1.02] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		1E-148	(Phototype score)	6.354	[5.89-6.82] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		1E-11	(Skin sensitivity to sun (high-medium to low-medium))	0.32792723	[0.23-0.42] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		7E-79	(Hair color phototype score)	1.602	[1.44-1.77] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		3E-30	(Hair color (black))	0.682465	[0.56-0.8] unit decrease	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		2E-101	(Hair color)	0.3482	[0.32-0.38] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs12913832-?		1E-52	(Hair color (blond))	1.6129291	[1.41-1.82] unit increase	Illumina [9499600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	15q13.1	HERC2	rs12913832-G	0.21416	4E-8				Affymetrix [28000000] (imputed)	N
801	chr15	28365617	28365618	rs12913832	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	15q13.1	HERC2, OCA2	rs12913832-A	NR	6E-184		0.306	[0.19-0.42] unit decrease	Affymetrix [8351141] (imputed)	N
801	chr15	28365617	28365618	rs12913832	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	15q13.1	HERC2	rs12913832-A	0.246	1E-100		0.499	[0.49-0.5] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
801	chr15	28365617	28365618	rs12913832	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	15q13.1	Intergenic	rs12913832-?		7E-6		1.252	[NR]	Affymetrix [492217] (imputed)	N
801	chr15	28365617	28365618	rs12913832	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	15q13.1	Intergenic	rs12913832-?	NR	4E-6		1.397	[NR]	Affymetrix [492217] (imputed)	N
801	chr15	28365617	28365618	rs12913832	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	15q13.1	HERC2, OCA2	rs12913832-?	NR	5E-104				Illumina [9143600] (imputed)	N
801	chr15	28365617	28365618	rs12913832	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Perceived skin darkness	9,316 European ancestry individuals	5,278 European ancestry individuals	15q13.1	HERC2	rs12913832-A	0.200017073587161	4E-77		0.21006678	[0.19-0.23] unit increase	Illumina [up to 11155022] (imputed)	N
801	chr15	28365617	28365618	rs12913832	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q13.1	HERC2, OCA2, RPL41P2	rs12913832-A	0.233	7E-14		3.48	[2.47-4.89]	Illumina [1556551]	N
801	chr15	28365617	28365618	rs12913832	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		15q13.1	HERC2	rs12913832-G	NR	1E-22		0.14	[0.12-0.16] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
801	chr15	28365617	28365618	rs12913832	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	15q13.1	HERC2	rs12913832-G	NR	1E-167		0.39	[0.37-0.41] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
801	chr15	28365617	28365618	rs12913832	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	HERC2	rs12913832-G	NR	1E-158	(Blue eye color)	2.84	[2.62-3.06] unit decrease	Affymetrix, Illumina [2469762] (imputed)	N
801	chr15	28365617	28365618	rs12913832	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Eye color	3871 European ancestry individuals	2,496 European ancestry individuals	15q13.1	HERC2	rs12913832-A	NR	1E-177	(Brown eye color)	2.82	[2.62-3.02] unit increase	Affymetrix, Illumina [2469762] (imputed)	N
801	chr15	28365617	28365618	rs12913832	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	15q13.1	OCA2	rs12913832-A	0.23	9E-88	(hair color)	0.97	[NR] unit increase	Illumina [535076]	N
801	chr15	28365617	28365618	rs12913832	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	15q13.1	OCA2	rs12913832-A	0.23	3E-52	(green eyes)	8.43	[NR]	Illumina [535076]	N
801	chr15	28365617	28365618	rs12913832	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Eye color	9,126 European ancestry individuals	NA	15q13.1	OCA2	rs12913832-A	0.23	1E-300	(eye color)	2.49	[NR] unit increase	Illumina [535076]	N
801	chr15	28365617	28365618	rs12913832	20463881	Liu F	2010-05-16	PLoS Genet	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	15q13.1	HERC2, OCA	rs12913832-?	NR	1E-300	(RS123 cohort)			Illumina [2543887] (imputed)	N
801	chr15	28365617	28365618	rs12913832	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	15q13.1	HERC2	rs12913832-A	NR	1E-77		0.44	[0.40-0.48] hair color score decrease	Illumina [528173]	N
801	chr15	28365617	28365618	rs12913832	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	15q13.1	HERC2	rs12913832-A	NR	4E-103		0.44	[0.40-0.48] hair color score decrease	Illumina [528173]	N
801	chr15	28371421	28371422	rs117007668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs117007668-?	NR	1E-300				NR [~ 8900000] (imputed)	N
801	chr15	28375413	28375414	rs138063419	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	15q13.1	NR	rs138063419-T	0.0010	5E-6		1.56	[1.29-1.88]	Illumina [270934]	N
801	chr15	28380257	28380258	rs75165924	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	HERC2	rs75165924-T	0.04666	3E-21		1.41	NR	Affymetrix [9154080] (imputed)	N
801	chr15	28380517	28380518	rs4778249	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs4778249-?	NR	6E-21				Illumina [181139] (imputed)	N
801	chr15	28380517	28380518	rs4778249	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q13.1	HERC2	rs4778249-?	NR	3E-6				Illumina [8896142] (imputed)	N
801	chr15	28380517	28380518	rs4778249	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs4778249-?	NR	4E-15				Illumina [8896142] (imputed)	N
801	chr15	28380517	28380518	rs4778249	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q13.1	HERC2	rs4778249-?	NR	3E-20				Illumina [8896142] (imputed)	N
801	chr15	28380517	28380518	rs4778249	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q13.1	HERC2	rs4778249-?	NR	1E-10				Illumina [8896142] (imputed)	N
801	chr15	28381545	28381546	rs8033755	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	15q13.1	Intergenic	rs8033755-A	NR	1E-7	(between families)	5.299	unit decrease	Affymetrix [up to 15107142] (imputed)	N
801	chr15	28382758	28382759	rs117219845	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Sunburn type	1,108 Japanese ancestry individuals	NA	15q13.1		rs117219845-T	0.25	4E-9		0.189	[0.13-0.25] unit decrease	Illumina [6258233] (imputed)	N
801	chr15	28383564	28383565	rs7403279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	15q13.1		rs7403279-?	NR	9E-55				NR [~ 8900000] (imputed)	N
801	chr15	28384490	28384491	rs7402990	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	15q13.1		rs7402990-G	NR	2E-9		0.0125605	[0.0086-0.0166] years increase	NR [7400000] (imputed)	N
801	chr15	28384490	28384491	rs7402990	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	15q13.1		rs7402990-G	NR	3E-9		0.0074636	[0.005-0.0099] years decrease	NR [7400000] (imputed)	N
801	chr15	28384490	28384491	rs7402990	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	15q13.1		rs7402990-G	NR	8E-31		0.018532	[0.015-0.022] years decrease	NR [7400000] (imputed)	N
801	chr15	28384490	28384491	rs7402990	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	15q13.1		rs7402990-G	NR	1E-18		0.05144556	[0.04-0.063] years increase	NR [7400000] (imputed)	N
801	chr15	28384532	28384533	rs551217952	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs551217952-C	0.002861	1E-21		0.68	[0.54-0.82] unit decrease	NR [11842647] (imputed)	N
801	chr15	28391421	28391422	rs139953376	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs139953376-T	0.004401	1E-24		0.37	[0.3-0.44] unit decrease	NR [11842647] (imputed)	N
801	chr15	28392260	28392261	rs12898729	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		15q13.1	intergenic	rs12898729-A	0.128	4E-11		0.788	[0.56-1.01] unit increase	Illumina [640625] (imputed)	N
801	chr15	28392260	28392261	rs12898729	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		15q13.1	HERC2	rs12898729-A	0.128125	3E-14		0.90041	[0.68-1.12] unit increase	Illumina [640625] (imputed)	N
801	chr15	28405843	28405844	rs192615001	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs192615001-T	0.002683	2E-14		0.34	[0.25-0.43] unit decrease	NR [11842647] (imputed)	N
801	chr15	28405843	28405844	rs192615001	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs192615001-T	0.001839	1E-33		0.56	[0.47-0.65] unit increase	NR [11842647] (imputed)	N
801	chr15	28405843	28405844	rs192615001	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	15q13.1		rs192615001-T	0.002261	4E-9		0.64	[0.43-0.85] unit increase	NR [11842647] (imputed)	N
801	chr15	28410490	28410491	rs12916300	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	15q13.1	HERC2	rs12916300-T	NR	2E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
801	chr15	28410490	28410491	rs12916300	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	15q13.1	HERC2	rs12916300-T	0.781245	7E-14		1.09	[1.06-1.11]	Affymetrix [7600000] (imputed)	N
801	chr15	28410490	28410491	rs12916300	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	15q13.1	HERC2	rs12916300-T	0.674684	4E-16		1.09	[1.07-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
801	chr15	28410490	28410491	rs12916300	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		15q13.1	HERC2	rs12916300-T	0.144	2E-7		0.629	[0.4-0.86] unit increase	Illumina [640625] (imputed)	N
801	chr15	28410490	28410491	rs12916300	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	15q13.1	HERC2	rs12916300-?		4E-7		1.35	[NR]	Affymetrix [492217] (imputed)	N
801	chr15	28410490	28410491	rs12916300	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	15q13.1	OCA2	rs12916300-T	0.71	8E-17		1.15	[NR]	Illumina [at least 560000] (imputed)	N
801	chr15	28410490	28410491	rs12916300	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	15q13.1	HERC2	rs12916300-?	NR	5E-47		0.067	[0.077-0.058] unit decrease	Illumina [12039491] (imputed)	N
801	chr15	28410490	28410491	rs12916300	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	15q13.1	HERC2	rs12916300-?	0.74	3E-9		1.1363636	[1.09-1.18]	Affymetrix [9610468] (imputed)	N
801	chr15	28437060	28437061	rs72714143	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	15q13.1	OCA2	rs72714143-G	NR	3E-6	(male)	1.0502	[1.03-1.07]	Affymetrix [9869154] (imputed)	N
801	chr15	28437060	28437061	rs72714143	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	15q13.1	NR	rs72714143-G	NR	2E-15		1.1027		Affymetrix [9869154] (imputed)	N
802	chr15	28468722	28468723	rs3940272	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	15q13.1		rs3940272-T	NR	4E-20		0.638294	[0.5-0.77] decrease	Affymetrix, Illumina [32876187] (imputed)	N
802	chr15	28469160	28469161	rs71397290	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs71397290-A	0.007945	3E-9		0.14	[0.093-0.187] unit increase	NR [11842647] (imputed)	N
802	chr15	28469160	28469161	rs71397290	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs71397290-A	0.008978	2E-19		0.22	[0.17-0.27] unit decrease	NR [11842647] (imputed)	N
802	chr15	28469160	28469161	rs71397290	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs71397290-A	0.008162	4E-11		0.25	[0.18-0.32] unit increase	NR [11842647] (imputed)	N
802	chr15	28476631	28476632	rs144864205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs144864205-?	NR	1E-300				NR [~ 8900000] (imputed)	N
802	chr15	28483185	28483186	rs529312329	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs529312329-T	0.004958	1E-190		0.78	[0.73-0.83] unit increase	NR [11842647] (imputed)	N
802	chr15	28487068	28487069	rs4932618	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	15q13.1		rs4932618-A	0.003238	7E-33		1.11	[0.93-1.29] unit increase	NR [11842647] (imputed)	N
802	chr15	28488887	28488888	rs8028689	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		15q13.1	NR	rs8028689-G	0.05	7E-6	(Any IgH translocation vs. controls)	1.65	[1.33-2.05]	Illumina [414804] (imputed)	N
802	chr15	28495955	28495956	rs12912427	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q13.1		rs12912427-G	0.78102	3E-61		0.13353	[0.12-0.15] unit decrease	Affymetrix [15580782] (imputed)	N
802	chr15	28495955	28495956	rs12912427	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		15q13.1	HERC2	rs12912427-G	0.158574	4E-9		0.72008	[0.49-0.95] unit increase	Illumina [640625] (imputed)	N
802	chr15	28495955	28495956	rs12912427	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	15q13.1	HERC2	rs12912427-G	NR	7E-10		0.154711	[0.11-0.2] unit increase	Illumina [at least 950000] (imputed)	N
802	chr15	28511996	28511997	rs79097182	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	15q13.1	HERC2	rs79097182-?	0.962	5E-14		2.564103	[2.29-2.84]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
802	chr15	28511996	28511997	rs79097182	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	15q13.1	HERC2	rs79097182-?	0.962	4E-9		2.07168	[1.83-2.31]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
802	chr15	28511996	28511997	rs79097182	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Blond vs non-blond hair color	2,888 European ancestry blond hair individuals, 4,203 European ancestry non-blond hair individuals	NA	15q13.1	HERC2	rs79097182-?	0.038	2E-14		2.9822	[2.70-3.26]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
802	chr15	28513363	28513364	rs916977	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q13.1		rs916977-T	NR	1E-72		0.997855	[0.89-1.11] decrease	Affymetrix, Illumina [32876187] (imputed)	N
802	chr15	28513363	28513364	rs916977	18252221	Kayser M	2008-01-24	Am J Hum Genet	Three genome-wide association studies and a linkage analysis identify HERC2 as a human iris color gene.	Iris color	925 Erasmus Rucphen individuals, 481 European ancestry females	5,575 European ancestry individuals, 1,292 Erasmus Rucphen individuals	15q13.1	HERC2	rs916977-?	NR	1E-43				Affymetrix, Illumina [up to 500000]	N
802	chr15	28514762	28514763	rs143077671	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs143077671-G	0.00875	2E-106		0.92	[0.84-1] unit decrease	NR [11842647] (imputed)	N
802	chr15	28516228	28516229	rs150809483	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs150809483-C	0.002649	1E-33		0.92	[0.77-1.07] unit decrease	NR [11842647] (imputed)	N
802	chr15	28517393	28517394	rs151179905	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	15q13.1	HERC2	rs151179905-T	0.01	8E-6	(right leg)	0.87	[0.48-1.26] g increase	Illumina [> 1100000]	N
802	chr15	28517393	28517394	rs151179905	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	15q13.1	HERC2	rs151179905-T	0.01	7E-6	(total body)	0.9	[0.51-1.29] g increase	Illumina [> 1100000]	N
802	chr15	28524298	28524299	rs374209324	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	15q13.1		rs374209324-T	8.9E-4	1E-17		0.7	[0.54-0.86] unit decrease	NR [11842647] (imputed)	N
802	chr15	28524298	28524299	rs374209324	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	15q13.1		rs374209324-T	6.465E-4	3E-10		1.38	[0.95-1.81] unit increase	NR [11842647] (imputed)	N
802	chr15	28529716	28529717	rs147859430	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs147859430-T	0.001363	2E-84		0.93	[0.84-1.02] unit increase	NR [11842647] (imputed)	N
802	chr15	28530181	28530182	rs1667394	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	15q13.1		rs1667394-C	NR	4E-22		0.634748	[0.51-0.76] decrease	Affymetrix, Illumina [32876187] (imputed)	N
802	chr15	28530181	28530182	rs1667394	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	15q13.1		rs1667394-C	NR	3E-77		1.01451	[0.91-1.12] decrease	Affymetrix, Illumina [32876187] (imputed)	N
802	chr15	28530181	28530182	rs1667394	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	606 European ancestry high cardiovascular risk elderly women	NA	15q13.1	HERC2	rs1667394-T	0.38	2E-6		0.134	[NR] unit decrease	Illumina [625127]	N
802	chr15	28530181	28530182	rs1667394	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667394-?		5E-163	(Eye color phototype score)	1.843	[1.72-1.97] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28530181	28530182	rs1667394	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667394-?		3E-176	(Eye color)	0.6088	[0.57-0.65] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28530181	28530182	rs1667394	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Eye color traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667394-?		1E-145	(Eye color (dark))	1.5500612	[1.42-1.68] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28530181	28530182	rs1667394	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	15q13.1	NR	rs1667394-C	NR	4E-78		0.226	[0.12-0.33] unit decrease	Affymetrix [8351141] (imputed)	N
802	chr15	28530181	28530182	rs1667394	23118974	Candille SI	2012-10-31	PLoS One	Genome-wide association studies of quantitatively measured skin, hair, and eye pigmentation in four European populations.	Eye color	175 European ancestry individuals	293 European ancestry individuals	15q13.1	HERC2, OCA2	rs1667394-C	0.28	2E-20	(Eye color)	0.353	[0.28-0.42] unit increase	Illumina [313763]	N
802	chr15	28530181	28530182	rs1667394	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. green eyes	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	15q13.1	OCA2	rs1667394-A	0.98	2E-53		6.74	[4.61-9.83]	Illumina [317511]	N
802	chr15	28530181	28530182	rs1667394	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blue vs. brown eyes	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	15q13.1	OCA2	rs1667394-A	0.88	1E-241		29.43	[21.47-40.35]	Illumina [317511]	N
802	chr15	28530181	28530182	rs1667394	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	15q13.1	OCA2	rs1667394-A	0.88	6E-35		4.94	[3.16-7.71]	Illumina [317511]	N
802	chr15	28533564	28533565	rs1667392	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	HERC2	rs1667392-C	NR	5E-9		0.267776	[0.18-0.36] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		9E-104	(Fitzpatrick phototype score)	0.3162	[0.29-0.34] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		7E-11	(Skin sensitivity to sun phototype score)	0.6035	[0.42-0.78] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		6E-116	(Phototype score)	6.123	[5.62-6.63] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		2E-20	(Skin color)	0.1647	[0.13-0.2] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		2E-19	(Skin color phototype score)	0.7935	[0.62-0.96] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		1E-11	(Skin sensitivity to sun)	0.1983	[0.14-0.26] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		9E-63	(Hair color phototype score)	1.549	[1.37-1.73] unit decrease	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		7E-38	(Hair color (light))	1.2948569	[1.1-1.49] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		3E-39	(Hair color (blond))	1.4178878	[1.21-1.62] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	15q13.1	HERC2	rs1667392-?		1E-78	(Hair color)	0.3348	[0.3-0.37] unit increase	Illumina [9499600] (imputed)	N
802	chr15	28533564	28533565	rs1667392	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin colour saturation	5,857 European ancestry individuals	NA	15q13.1	HERC2, OCA2	rs1667392-G	0.25	4E-14		0.01	[NR] unit increase	Illumina [11155022] (imputed)	N
802	chr15	28534776	28534777	rs117325217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	15q13.1		rs117325217-?	NR	8E-21				NR [~ 8900000] (imputed)	N
802	chr15	28535265	28535266	rs1635168	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	15q13.1	OCA2, HERC2	rs1635168-A	0.06981	9E-14		1.371	[1.26-1.49]	Illumina [8966411] (imputed)	N
802	chr15	28546172	28546173	rs76704029	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q13.1	HERC2	rs76704029-T	0.732	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
802	chr15	28560721	28560722	rs77572354	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q13.1	HERC2	rs77572354-G	0.08222	8E-12		1.277	NR	Affymetrix [9154080] (imputed)	N
803	chr15	28647777	28647778	rs4591123	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q13.1		rs4591123-A	0.9319	2E-11		0.08983	[0.064-0.116] unit decrease	Affymetrix [15580782] (imputed)	N
804	chr15	28760305	28760306	rs150848999	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q13.1	NR	rs150848999-?	NR	4E-6	(Japanese)	0.2222	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
806	chr15	29005674	29005675	rs692588	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q13.1	GOLGA8G	rs692588-?	NR	1E-6	(trimethylamine N oxide)	2.7939658	[1.66-3.92] unit increase	Affymetrix [at least 2500000] (imputed)	N
806	chr15	29006092	29006093	rs8033165	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	15q13.1	intergenic	rs8033165-T	NR	2E-12		0.15	[0.11-0.19] hair color score increase	Illumina [528173]	N
806	chr15	29006092	29006093	rs8033165	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. blond hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	15q13.1	intergenic	rs8033165-T	NR	5E-11		0.12	[0.08-0.16] hair color score increase	Illumina [528173]	N
806	chr15	29033908	29033909	rs56166703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs56166703-?	NR	1E-245				NR [~ 8900000] (imputed)	N
806	chr15	29043335	29043336	rs11630550	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q13.1		rs11630550-T	0.46554	5E-6		0.030626	[0.018-0.044] unit decrease	Affymetrix [15580782] (imputed)	N
807	chr15	29118783	29118784	rs36194177	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	APBA2	rs36194177-A	NR	5E-10		0.228791	[0.16-0.3] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
807	chr15	29134494	29134495	rs149859475	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q13.1		rs149859475-C	0.006287	3E-10		0.26	[0.18-0.34] unit increase	NR [11842647] (imputed)	N
807	chr15	29145029	29145030	rs36181864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs36181864-?	NR	1E-111				NR [~ 8900000] (imputed)	N
808	chr15	29239816	29239817	rs17680945	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	15q13.1	APBA2	rs17680945-A	0.02	2E-6	(Harm avoidance)	0.92	unit increase	Affymetrix, Illumina [1252222] (imputed)	N
808	chr15	29249604	29249605	rs28398028	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q13.1		rs28398028-T	6.088E-4	1E-12		0.55	[0.4-0.7] unit increase	NR [11842647] (imputed)	N
808	chr15	29261715	29261716	rs4424881	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	APBA2	rs4424881-T	NR	5E-7		0.158	[0.095-0.221] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
808	chr15	29275846	29275847	rs11630839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs11630839-?	NR	1E-72				NR [~ 8900000] (imputed)	N
808	chr15	29322931	29322932	rs77184423	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	15q13.1	APBA2	rs77184423-G	0.0045	1E-8	(EA)	5.7181206	[NR] unit increase	Illumina [9039731] (imputed)	N
808	chr15	29338501	29338502	rs1873283	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	15q13.1	APBA2	rs1873283-?	NR	6E-6		0.28	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
808	chr15	29345170	29345171	rs781711406	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	15q13.1	NR	rs781711406-G		2E-7		1.98	[NR] unit increase	Illumina [NR]	N
809	chr15	29400124	29400125	rs2279486	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	15q13.1	APBA2	rs2279486-?	NR	5E-7		3.604	NR	Illumina [802276]	N
809	chr15	29404041	29404042	rs748366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs748366-?	NR	1E-46				NR [~ 8900000] (imputed)	N
809	chr15	29424754	29424755	rs2636061	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q13.1	FAM189A1	rs2636061-A	0.0070	7E-6	(Folate )	0.02	[NR] nmol/L increase	Illumina [899892]	N
809	chr15	29425935	29425936	rs2636060	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	15q13.1	FAM189A1	rs2636060-A	NR	6E-10		0.231106	[0.16-0.3] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
811	chr15	29685339	29685340	rs533554	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM189A1	rs533554-?	NR	2E-9	(male)	2.09064	[NR] unit decrease	Affymetrix [NR] (imputed)	N
811	chr15	29731443	29731444	rs11856574	22247754	Murray SS	2012-01-11	PLoS One	Genome-wide association of implantable cardioverter-defibrillator activation with life-threatening arrhythmias.	Life threatening arrhythmia	607 European ancestry cases, 297 European ancestry controls	NA	15q13.1	KIAA0574	rs11856574-G	0.86	5E-6		2.02		Illumina [NR] (imputed)	N
812	chr15	29850838	29850839	rs72713719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q13.1		rs72713719-?	NR	2E-10				NR [~ 8900000] (imputed)	N
812	chr15	29856237	29856238	rs779	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	15q13.1		rs779-?	NR	1E-8		0.0261	unit decrease	NR [NR]	N
812	chr15	29865025	29865025	rs545838826	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	15q13.1		rs545838826-?	NR	7E-6		0.2662914	[0.15-0.38] unit increase	Illumina [9906551] (imputed)	N
812	chr15	29865025	29865025	rs545838826	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	15q13.1		rs545838826-?	NR	7E-7		0.3089434	[0.19-0.43] unit increase	Illumina [9901720] (imputed)	N
812	chr15	29876648	29876649	rs75646498	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q13.1	intergenic	rs75646498-A	0.03	8E-7		4.0	[2.21-7.22]	Illumina [1556551]	N
813	chr15	29888395	29888396	rs1471225	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q13.1	intergenic	rs1471225-?	NR	8E-6	(count)			Perlegen [429981]	N
813	chr15	29914824	29914825	rs7169056	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	15q13.1	intergenic	rs7169056-A	NR	5E-6				Illumina [up to 3935887] (imputed)	N
813	chr15	29964741	29964742	rs4522365	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	15q13.1	FAM189A1, BC043570	rs4522365-T	0.17	2E-9	(Hispanic/Latino)	0.29	[0.19-0.39] unit decrease	Illumina [up to 13042663] (imputed)	N
813	chr15	29964741	29964742	rs4522365	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	15q13.1	FAM189A1, LOC100130111	rs4522365-?	NR	2E-7	(TransMeta)			Illumina [3153931] (imputed)	N
814	chr15	30086022	30086023	rs74710884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q13.1		rs74710884-?	NR	1E-9				NR [~ 8900000] (imputed)	N
814	chr15	30086022	30086023	rs74710884	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q13.1		rs74710884-?	NR	6E-10		0.0255473	[0.017-0.034] unit increase	Affymetrix [20259828] (imputed)	N
814	chr15	30105658	30105659	rs78026071	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	15q13.1	NR	rs78026071-?	NR	2E-6		0.26	[0.15-0.37] unit increase	Illumina [~ 7800000] (imputed)	N
814	chr15	30134413	30134414	rs785455	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	15q13.1	TJP1	rs785455-?	NR	3E-8		0.0446	NR L increase	Affymetrix [9390170] (imputed)	N
815	chr15	30171878	30171879	rs62014489	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs62014489-G	0.883514	2E-12		0.0959294	[0.067-0.124] decrease	Affymetrix [11014269] (imputed)	N
815	chr15	30172701	30172702	rs62014490	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q13.1	TJP1	rs62014490-C	0.117	3E-12		4.303	[3.09-5.51] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
815	chr15	30173884	30173885	rs785422	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	15q13.1	TJP1	rs785422-?	NR	1E-6		0.166	[0.24-0.1] unit decrease	Illumina [NR]	N
815	chr15	30173884	30173885	rs785422	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	15q13.1	TJP1	rs785422-T	0.1	6E-12		3.91	[2.81-5.01] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
815	chr15	30173884	30173885	rs785422	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q13.1	TJP1	rs785422-T	0.11	3E-11		0.14	[0.1-0.18] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
815	chr15	30188231	30188232	rs785429	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q13.1	TJP1	rs785429-?	NA	1E-19		3.72	[2.92-4.52] unit increase	Affymetrix [5541230] (imputed)	N
815	chr15	30193467	30193468	rs711355	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	15q13.1	TJP1	rs711355-T	0.33	2E-7	(Effect of Risperidone on PGI)			Affymetrix [492900]	N
815	chr15	30201187	30201188	rs111948642	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q13.1		rs111948642-C	0.22	1E-11		6.81	z score increase	Affymetrix [9061022] (imputed)	N
815	chr15	30205734	30205735	rs4779672	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q13.1		rs4779672-T	0.19	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
815	chr15	30224513	30224514	rs72625154	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q13.1	NR	rs72625154-T	0.1538	5E-12				NR [9056863] (imputed)	N
816	chr15	30300720	30300721	rs56979833	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	15q13.2	NR	rs56979833-?	NR	4E-7				Illumina [1735619]	N
816	chr15	30352428	30352429	rs76043556	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		15q13.2	intergenic	rs76043556-?	NR	7E-7	(AA)	0.058	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
820	chr15	30898331	30898332	rs143536437	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	15q13.2	ARHGAP11B	rs143536437-C	0.72	3E-6		1.73	[NR]	Illumina [6923995] (imputed)	N
823	chr15	31197994	31197995	rs151322829	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q13.3	NR	rs151322829-T	0.01	3E-6		2.08	[1.77-2.39]	Illumina [8468885] (imputed)	N
823	chr15	31202960	31202961	rs150393409	29750799	Chao MJ	2018-05-11	PLoS Genet	Population-specific genetic modification of Huntington's disease in Venezuela.	Huntington's disease (age at onset)	374 Venezuelan ancestry individuals, 4,061 European ancestry individuals	NA	15q13.3	FAN1	rs150393409-A	0.0014	2E-20	(EA)	6.4	[NR] years decrease	Illumina [NR] (imputed)	N
823	chr15	31215934	31215935	rs7178375	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	15q13.3	MTMR15, MTMR10, TRPM1	rs7178375-?	0.73	6E-6		1.27	[1.17-1.37]	Illumina [1361436] (imputed)	N
823	chr15	31287342	31287343	rs8031584	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	15q13.3	FAN1, MTMR10, TRPM1	rs8031584-?	NR	8E-6				Illumina [9650000] (imputed)	N
823	chr15	31294713	31294714	rs3784589	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q13.3	TRPM1	rs3784589-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
823	chr15	31297075	31297076	rs141107350	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	15q13.3		rs141107350-A	0.030463	6E-7		1.6458197	NR	Affymetrix [7846216] (imputed)	N
824	chr15	31334361	31334362	rs17815774	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	15q13.3	TRPM1	rs17815774-?	NR	3E-6	(risperidone)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
824	chr15	31357137	31357138	rs919001	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	15q13.3	NR	rs919001-A	NR	7E-6	(univariable, recessive)	3.913	[2.134-7.077]	Illumina [729373]	N
824	chr15	31368269	31368270	rs16956517	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q13.3	NR	rs16956517-A	0.02091	6E-9	(MCEE)	0.04534	NR unit decrease	Illumina [1671387] (imputed)	N
824	chr15	31394081	31394082	rs11070811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	15q13.3		rs11070811-?	NR	4E-9				NR [~ 8900000] (imputed)	N
824	chr15	31394867	31394868	rs7182946	28813576	Persad PJ	2017-08-01	Invest Ophthalmol Vis Sci	Joint Analysis of Nuclear and Mitochondrial Variants in Age-Related Macular Degeneration Identifies Novel Loci TRPM1 and ABHD2/RLBP1.	Advanced age-related macular degeneration	Up to 16,144 European ancestry cases, up to 17,832 European ancestry controls	NA	15q13.3	TRPM1	rs7182946-G	0.43	2E-7				Illumina [3866946] (imputed)	N
824	chr15	31398081	31398082	rs11635657	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	15q13.3	TRPM1	rs11635657-T	0.3226	2E-7		6.077		Affymetrix [757439]	N
824	chr15	31406334	31406335	rs11070816	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	15q13.3	NR	rs11070816-T	0.425	2E-7		1.778	[1.43-2.212]	Illumina [7585599] (imputed)	N
824	chr15	31408268	31408269	rs149916999	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	15q13.3	Intergenic	rs149916999-A	NR	1E-7	(between families)	5.334	unit increase	Affymetrix [up to 15107142] (imputed)	N
824	chr15	31441760	31441761	rs192098867	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	15q13.3	TRPM1	rs192098867-?	NR	7E-6		1.2987013	[1.16-1.47]	Affymetrix, Illumina [11480632] (imputed)	N
824	chr15	31448117	31448118	rs116622850	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	15q13.3	NR	rs116622850-A	0.988	4E-7		4.9712	[3.04-6.9] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
824	chr15	31448117	31448118	rs116622850	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	15q13.3	NR	rs116622850-A	0.988	4E-7		4.9712	[3.04-6.9] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
824	chr15	31453146	31453147	rs75638145	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q13.3	TRPM1	rs75638145-?	NR	3E-14		0.6521	[0.46-0.84] unit increase	Affymetrix [11100000] (imputed)	N
825	chr15	31463377	31463378	rs7169523	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	15q13.3	NR	rs7169523-G	0.22	2E-6		1.4	[1.22-1.60]	Illumina [274256]	N
825	chr15	31469927	31469928	rs17228178	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	15q13.3	NR	rs17228178-T	0.2813	1E-6		0.1619	[0.097-0.227] unit increase	Illumina [10677593] (imputed)	N
825	chr15	31469927	31469928	rs17228178	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	15q13.3	Intergenic	rs17228178-T	0.2846	4E-7	(Middle facial depth)	1.215	[0.76-1.67] unit increase	Illumina [34985077] (imputed)	N
825	chr15	31471471	31471472	rs1223889	32998964	Trendowski MR	2020-09-30	Clin Cancer Res	Clinical and Genome-Wide Analysis of Multiple Severe Cisplatin-Induced Neurotoxicities in Adult-Onset Cancer Survivors.	Multiple severe cisplatin-induced neurotixicitiies in testicular cancer survivors	104 European ancestry cases, 196 European ancestry controls	NA	15q13.3	NR	rs1223889-G		8E-6		0.2677	[NR]	Illumina [5385324] (imputed)	N
825	chr15	31537558	31537559	rs6493544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q13.3		rs6493544-?	NR	4E-29				NR [~ 8900000] (imputed)	N
825	chr15	31537558	31537559	rs6493544	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q13.3	NR	rs6493544-G	NR	3E-8		0.0309535	[0.019-0.043] unit decrease	Affymetrix [16832071] (imputed)	N
825	chr15	31538541	31538542	rs8041227	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	15q13.3	LOC283710, KLF13	rs8041227-G	0.72	6E-10		1.52	[NR]	Illumina [1468075]	N
825	chr15	31540394	31540395	rs74609360	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q13.3	intergenic	rs74609360-A	0.03	2E-7		4.14	[2.32-7.39]	Illumina [1556551]	N
825	chr15	31540988	31540989	rs8024893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q13.3		rs8024893-G	0.885912	2E-17		0.03026708	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr15	31540988	31540989	rs8024893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs8024893-A	0.120103	3E-30				Affymetrix, Illumina [22063850] (imputed)	N
825	chr15	31540988	31540989	rs8024893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q13.3	NR	rs8024893-A	0.114028	3E-30		0.034486	[0.029-0.04] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
825	chr15	31540988	31540989	rs8024893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q13.3	intergenic	rs8024893-G	0.8847	4E-11		0.03722595	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr15	31546901	31546902	rs116958134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q13.3		rs116958134-T	NR	1E-30		0.0678	[0.056-0.079] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
825	chr15	31546901	31546902	rs116958134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q13.3		rs116958134-T	NR	2E-24		0.0606	[0.049-0.072] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
825	chr15	31548995	31548996	rs75905933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs75905933-G	0.973364	7E-37				Affymetrix, Illumina [24246363] (imputed)	N
825	chr15	31548995	31548996	rs75905933	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	15q13.3	NR	rs75905933-T	NR	4E-6	(CPZe)	0.572	[NR] unit decrease	Illumina [1190033]	N
825	chr15	31551729	31551730	rs76900795	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q13.3		rs76900795-A	0.013799	2E-21		0.0895874	[0.072-0.107] unit increase	Affymetrix [93095623] (imputed)	N
825	chr15	31551729	31551730	rs76900795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q13.3	NR	rs76900795-G	0.986209	4E-24		0.083299	[0.067-0.099] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
825	chr15	31552312	31552313	rs75891547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q13.3		rs75891547-C	0.01376	1E-18		0.08385824	[0.065-0.102] unit increase	Affymetrix [93095623] (imputed)	N
825	chr15	31552312	31552313	rs75891547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs75891547-T	0.973651	3E-29				Affymetrix, Illumina [20825802] (imputed)	N
825	chr15	31552312	31552313	rs75891547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q13.3	NR	rs75891547-T	0.986333	5E-21		0.078578	[0.062-0.095] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
825	chr15	31552312	31552313	rs75891547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q13.3		rs75891547-?	NR	9E-22				NR [~ 8900000] (imputed)	N
825	chr15	31552996	31552997	rs74013337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q13.3		rs74013337-T	0.01407	2E-21		0.0906511	[0.072-0.109] unit increase	Affymetrix [93095623] (imputed)	N
825	chr15	31552996	31552997	rs74013337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q13.3		rs74013337-T	0.014105	8E-17		0.079568215	[0.061-0.098] unit increase	Affymetrix [93095623] (imputed)	N
825	chr15	31553370	31553371	rs11855741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	15q13.3	LOC283710, KLF13	rs11855741-?	NR	2E-12		0.06517	[0.047-0.083] unit increase novel	Illumina [6108953] (imputed)	N
825	chr15	31553741	31553742	rs11854121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	15q13.3		rs11854121-G	0.071574	2E-18		0.0622998	[0.048-0.076] unit increase	Illumina [13476266] (imputed)	N
825	chr15	31553741	31553742	rs11854121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	15q13.3		rs11854121-G	0.07154	7E-14		0.0538736	[0.04-0.068] unit increase	Illumina [13476299] (imputed)	N
825	chr15	31553741	31553742	rs11854121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	15q13.3	NR	rs11854121-T	0.93289	4E-12		0.060218	[0.043-0.077] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
825	chr15	31553741	31553742	rs11854121	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	15q13.3	LOC283710, KLF13	rs11854121-?	NR	1E-9		0.05638	[0.038-0.075] unit increase novel	Illumina [6108953] (imputed)	N
826	chr15	31602086	31602087	rs2338701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q13.3		rs2338701-C	0.438919	3E-9		0.013504636	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr15	31609545	31609546	rs7175141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q13.3		rs7175141-T	0.452197	2E-11		0.015184741	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31612040	31612041	rs11636034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q13.3		rs11636034-T	0.340589	3E-11		0.015667573	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31612040	31612041	rs11636034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q13.3		rs11636034-T	0.34058	5E-16		0.0166433	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31612040	31612041	rs11636034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q13.3		rs11636034-T	0.340606	5E-14		0.017732091	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31627885	31627886	rs9920314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q13.3		rs9920314-?	NR	5E-8				NR [~ 8900000] (imputed)	N
826	chr15	31637568	31637569	rs28510484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q13.3		rs28510484-C	NR	1E-8		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
826	chr15	31637568	31637569	rs28510484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q13.3	NR	rs28510484-C	NR	3E-10		0.0211	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
826	chr15	31637568	31637569	rs28510484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q13.3	KLF13	rs28510484-G	0.82954	1E-9		0.0154202	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
826	chr15	31637568	31637569	rs28510484	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q13.3	NR	rs28510484-G	0.829331	4E-12		0.00811948	[0.0059-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
826	chr15	31637568	31637569	rs28510484	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q13.3	NR	rs28510484-G	0.829331	2E-11		0.00892693	[0.0065-0.0114] unit increase	Affymetrix [16582965] (imputed)	N
826	chr15	31637665	31637666	rs28624578	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q13.3	KLF13	rs28624578-T	0.829394	2E-8		0.0149261	[0.0097-0.0201] unit decrease	Affymetrix [NR] (imputed)	N
826	chr15	31637665	31637666	rs28624578	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	15q13.3	KLF13	rs28624578-T	0.83	9E-10		1.18		Illumina, Perlegen [9113515] (imputed)	N
826	chr15	31641632	31641633	rs16956707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q13.3	KLF13	rs16956707-A	0.059816	7E-11		0.030814316	[0.022-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr15	31641632	31641633	rs16956707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q13.3	KLF13	rs16956707-A	0.0598260000000001	6E-13		0.03386232	[0.025-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr15	31641632	31641633	rs16956707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q13.3	KLF13	rs16956707-A	0.059822	4E-12		0.03262684	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr15	31656740	31656741	rs34331965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q13.3	KLF13	rs34331965-A	0.041425	2E-11		0.0333575	[0.023-0.044] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31656740	31656741	rs34331965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q13.3	KLF13	rs34331965-A	0.041412	3E-12		0.03961501	[0.029-0.051] unit increase	Affymetrix [93095623] (imputed)	N
826	chr15	31660360	31660361	rs77240922	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	15q13.3	KLF13	rs77240922-A	0.0335	5E-6		0.0884	[0.05-0.126] unit increase	Affymetrix, Illumina [NR] (imputed)	N
826	chr15	31660798	31660799	rs28562483	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q13.3	NR	rs28562483-G	0.871661	3E-8		0.0100557	[0.0066-0.0135] unit increase	Affymetrix [16582621] (imputed)	N
826	chr15	31660798	31660799	rs28562483	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q13.3	NR	rs28562483-G	0.871661	5E-8		0.0105795	[0.0069-0.0142] unit increase	Affymetrix [16582614] (imputed)	N
826	chr15	31666091	31666092	rs141999530	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q13.3	KLF13	rs141999530-T	0.061988	1E-12		0.033370994	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr15	31675851	31675852	rs79622589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q13.3	KLF13	rs79622589-T	NR	1E-10		0.0279566	[0.019-0.036] unit increase	Affymetrix [323858] (imputed)	N
826	chr15	31679469	31679470	rs4779523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q13.3	KLF13	rs4779523-A	NR	2E-9		0.0190298	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
826	chr15	31679469	31679470	rs4779523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q13.3	KLF13	rs4779523-A	NR	6E-10		0.0197166	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
826	chr15	31679469	31679470	rs4779523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q13.3	KLF13	rs4779523-A	NR	2E-8		0.0184749	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
826	chr15	31679469	31679470	rs4779523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q13.3	KLF13	rs4779523-A	NR	2E-8		0.0194338	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
826	chr15	31683623	31683624	rs8030297	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (intracranial brain volume)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	15q13.3	KLF13	rs8030297-T	NR	1E-7		6.73	percent decrease	Affymetrix [8762422] (imputed)	N
826	chr15	31687924	31687925	rs35799005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q13.3		rs35799005-?	NR	6E-11				NR [~ 8900000] (imputed)	N
826	chr15	31689542	31689543	rs12441543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q13.3	KLF13	rs12441543-A	NR	4E-8		0.0189725	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
826	chr15	31689542	31689543	rs12441543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q13.3	KLF13	rs12441543-A	NR	1E-8		0.0197168	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
826	chr15	31689542	31689543	rs12441543	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q13.3		rs12441543-A	0.29	2E-13				NR [NR] (imputed)	N
826	chr15	31689542	31689543	rs12441543	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q13.3		rs12441543-A	0.29	1E-12		0.012	% increase	NR [NR] (imputed)	N
826	chr15	31689542	31689543	rs12441543	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	15q13.3		rs12441543-A	0.29	2E-6		0.01	U/L decrease	NR [NR] (imputed)	N
826	chr15	31689542	31689543	rs12441543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q13.3		rs12441543-?	NR	1E-20				NR [~ 8900000] (imputed)	N
826	chr15	31689542	31689543	rs12441543	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q13.3	NR	rs12441543-A	0.2896	9E-22		0.0189	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
826	chr15	31689542	31689543	rs12441543	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	15q13.3	NR	rs12441543-A	0.2896	9E-22		0.0189	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
826	chr15	31690077	31690077	rs541834608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q13.3	KLF13	rs541834608-CG	NR	2E-14		0.028852	[0.021-0.036] unit increase	Affymetrix [323858] (imputed)	N
826	chr15	31690077	31690077	rs541834608	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q13.3	KLF13	rs541834608-CG	0.2398	2E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
826	chr15	31695077	31695077	rs5811641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q13.3	KLF13	rs5811641-C	NR	3E-9		0.0199408	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
826	chr15	31695077	31695077	rs5811641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q13.3	KLF13	rs5811641-C	NR	1E-9		0.0205262	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
826	chr15	31695077	31695077	rs5811641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q13.3	KLF13	rs5811641-C	NR	2E-13		0.0231371	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
826	chr15	31696716	31696717	rs6493652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q13.3	KLF13	rs6493652-A	NR	1E-10		0.0195286	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
826	chr15	31696935	31696936	rs12441765	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q13.3	NR	rs12441765-?	NR	5E-18				Affymetrix [~ 8270000] (imputed)	N
826	chr15	31705408	31705409	rs4779872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q13.3		rs4779872-C	NR	2E-8		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
826	chr15	31705408	31705409	rs4779872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q13.3	NR	rs4779872-C	NR	3E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
826	chr15	31705682	31705683	rs4779526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q13.3	KLF13	rs4779526-T	NR	4E-11		0.0216459	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
826	chr15	31705682	31705683	rs4779526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q13.3	KLF13	rs4779526-T	NR	1E-11		0.0222373	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
826	chr15	31705682	31705683	rs4779526	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q13.3	NR	rs4779526-A	0.76	2E-22		0.021	[0.017-0.025] unit increase	Affymetrix [2446094] (imputed)	N
826	chr15	31705682	31705683	rs4779526	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q13.3	NR	rs4779526-A	0.76	5E-8				Affymetrix [2446094] (imputed)	N
826	chr15	31705682	31705683	rs4779526	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q13.3	NA	rs4779526-A	0.7568	2E-10		0.0132	[0.0091-0.0173] unit increase	NR [~ 27400000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q13.3	KLF13	rs8042543-C	0.7875	3E-8	(EA)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q13.3	KLF13	rs8042543-C	0.7875	1E-6	(EA)	0.0277	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q13.3	KLF13	rs8042543-?	0.7875	9E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q13.3	KLF13	rs8042543-T	0.2071	8E-6		0.0149	[0.0084-0.0214] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q13.3	KLF13	rs8042543-T	0.2071	7E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q13.3	KLF13	rs8042543-T	0.2071	2E-9		0.0272	[0.018-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q13.3	KLF13	rs8042543-T	0.2071	1E-7	(women)	0.0313	[0.02-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	15q13.3	NR	rs8042543-T	0.212439614225287	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	15q13.3	NR	rs8042543-T	0.212439614225287	2E-9		0.025153223	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
826	chr15	31708262	31708263	rs8042543	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q13.3	KLF13	rs8042543-C	0.7824	1E-9	(EA)	0.0263	[0.018-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
826	chr15	31708262	31708263	rs8042543	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q13.3	KLF13	rs8042543-C	0.781	1E-10		0.0271	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
826	chr15	31708262	31708263	rs8042543	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q13.3	KLF13	rs8042543-C	0.7794	1E-6	(EA, men)	0.0302	[0.018-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
826	chr15	31708262	31708263	rs8042543	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q13.3	KLF13	rs8042543-C	0.7763	3E-7	(men)	0.0309	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
826	chr15	31710770	31710771	rs191540954	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	15q13.3	NR	rs191540954-?	NR	9E-6		0.2896	[0.16-0.42] unit decrease	Illumina [at least 560000] (imputed)	N
827	chr15	31725774	31725775	rs7403010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q13.3	KLF13	rs7403010-C	NR	1E-10		0.021968	[0.015-0.029] unit increase	Affymetrix [321788] (imputed)	N
827	chr15	31726823	31726824	rs7402977	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	15q13.3	NR	rs7402977-A	0.2639	1E-9		0.0127	[0.0086-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
827	chr15	31728507	31728508	rs4779875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q13.3	KLF13	rs4779875-G	NR	3E-8		0.064384	[0.042-0.087] unit decrease	Affymetrix [127266] (imputed)	N
827	chr15	31741215	31741216	rs1075232	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer (non-distant metastatic)	up to 2,843 European ancestry cases	up to 3,205 European ancestry cases	15q13.3	OTUD7A	rs1075232-A	0.05	3E-6	(Overall Survival)	1.49	[1.26-1.76]	Illumina [~ 2700000] (imputed)	N
827	chr15	31793929	31793930	rs7164569	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	15q13.3	OTUD7A	rs7164569-A	0.36	3E-6		1.15	[1.09-1.23]	Affymetrix, Illumina [2543885] (imputed)	N
827	chr15	31814454	31814455	rs76371172	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	15q13.3	NR	rs76371172-G	0.020000000000000018	8E-7		1.6393442	[1.35-2]	NR [at least 8482392] (imputed)	N
827	chr15	31814454	31814455	rs76371172	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	15q13.3	NR	rs76371172-G	0.020000000000000018	8E-7		1.6393442	[1.35-2]	NR [at least 8482392] (imputed)	N
827	chr15	31818378	31818379	rs77344822	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever in mesalamine-treated irritable bowel disease	90 Japanese ancestry cases, 1,433 Japanese ancestry controls	22 Japanese ancestry cases, 766 Japanese ancestry controls	15q13.3	NR	rs77344822-T	0.0232	5E-8		4.78	[4.22-5.34]	NR [7215020] (imputed)	N
827	chr15	31822214	31822215	rs7163763	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	15q13.3	CHRNA7	rs7163763-?	NR	1E-6	(AA)	157.7	[94.59-220.81] unit increase	Illumina [377173]	N
827	chr15	31829706	31829707	rs2125623	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	15q13.3	OTUD7A	rs2125623-C	0.71	1E-6	(EA)	1.23	[0.99-1.54]	Affymetrix [up to 2366858] (imputed)	N
827	chr15	31843527	31843528	rs4284600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q13.3		rs4284600-?	NR	7E-9				NR [~ 8900000] (imputed)	N
828	chr15	31857493	31857494	rs1471212	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q13.3	NA	rs1471212-A	0.4732	2E-10		0.0109	[0.0076-0.0142] unit increase	NR [~ 27400000] (imputed)	N
828	chr15	31859634	31859635	rs2219507	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	15q13.3	NR	rs2219507-A	NR	7E-6		0.0141	[0.008-0.0202] unit decrease	Illumina [541614]	N
828	chr15	31870452	31870453	rs12899987	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	15q13.3	NR	rs12899987-T	0.81	3E-7		0.264	[0.16-0.36] unit increase	Illumina [5418572] (imputed)	N
829	chr15	31986242	31986243	rs192142097	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q13.3	NR	rs192142097-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
829	chr15	32070174	32070175	rs117224737	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	15q13.3	NR	rs117224737-?	NR	7E-10		6.159	NR z score increase	Illumina [at least 830937] (imputed)	N
833	chr15	32514788	32514789	rs61323625	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q13.3	intergenic	rs61323625-T	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
833	chr15	32516626	32516627	rs2651424	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	15q13.3	intergenic	rs2651424-T	0.222944	8E-6		0.515867	[0.3-0.74] unit increase	NR [7263501] (imputed)	N
836	chr15	32927475	32927476	rs8037818	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q13.3	ARHGAP11A, SCG5	rs8037818-G	0.181	5E-8	(Sleep duration )	0.04	[NR] min/d increase	Illumina [899892]	N
836	chr15	32934860	32934861	rs74822788	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	15q13.3	NR	rs74822788-?	NR	3E-6		0.0894	[0.052-0.127] unit increase	Illumina [at least 560000] (imputed)	N
836	chr15	32980100	32980101	rs147237492	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q13.3	NR	rs147237492-T	NR	5E-6	(conditioned on rs1426654)	1.05296	[0.6-1.51] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
836	chr15	32985477	32985478	rs12592208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q13.3	SCG5	rs12592208-C	NR	2E-8		0.017168	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
836	chr15	32985477	32985478	rs12592208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q13.3	SCG5	rs12592208-C	NR	1E-8		0.017387	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
836	chr15	32992835	32992836	rs12708491	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q13.3	GREM1	rs12708491-G	0.5872	4E-15		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
836	chr15	32993110	32993111	rs16969681	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	15q13.3	SCG5	rs16969681-T	NR	7E-8	(East Asian)	1.07	[1.05-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
836	chr15	32993110	32993111	rs16969681	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q13.3	NR	rs16969681-T	0.09	3E-27		1.22	[1.18-1.27]	Affymetrix, Illumina [> 10000000] (imputed)	N
836	chr15	32993110	32993111	rs16969681	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	15q13.3	SCG5	rs16969681-T	0.46	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 10700000] (imputed)	N
836	chr15	32993110	32993111	rs16969681	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q13.3	GREM1	rs16969681-T	0.0937	1E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [16900397] (imputed)	N
836	chr15	32994755	32994756	rs4779584	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	15q13.3	CRAC1, HMPS, GREM1	rs4779584-T	0.81	1E-8		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
836	chr15	32994755	32994756	rs4779584	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	15q13.3	CRAC1, HMPS, GREM1	rs4779584-?	0.18	5E-7		1.12	[1.08-1.19]	Affymetrix, Illumina [2708280] (imputed)	N
836	chr15	32994755	32994756	rs4779584	21761138	Peters U	2011-07-15	Hum Genet	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	15q13.3	GREM1, SCG5	rs4779584-?	0.19	2E-8		1.18	[1.11-1.24]	Illumina [378739]	N
836	chr15	32994755	32994756	rs4779584	18372905	Tomlinson IP	2008-03-30	Nat Genet	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls	15q13.3	intergenic	rs4779584-?	0.19	5E-7		1.23	[1.14-1.34]	Illumina [547647]	N
836	chr15	32995297	32995298	rs16970016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q13.3		rs16970016-A	NR	1E-13		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
836	chr15	32995467	32995468	rs6494598	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	15q13.3	SCG5, GREM1	rs6494598-?	NR	6E-45		1.222	[1.188-1.256]	Illumina [13537761] (imputed)	N
836	chr15	32995763	32995764	rs1124774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q13.3		rs1124774-G	0.175844	2E-11		0.0184779	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
836	chr15	32999422	32999423	rs6494601	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	15q13.3	NR	rs6494601-?	NR	1E-7				Illumina [at least 7383741] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q13.3		rs58658771-A	0.180413	2E-11		0.019378273	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q13.3		rs58658771-A	0.180361	2E-14		0.022046117	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q13.3	NR	rs58658771-T	0.818998	4E-11		0.016172	[0.011-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs58658771-A	0.269919	1E-11				Affymetrix, Illumina [24246363] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q13.3	NR	rs58658771-A	0.181676	8E-14		0.017685	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs58658771-A	0.278069	4E-15				Affymetrix, Illumina [20825802] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q13.3	NR	rs58658771-A	0.181841	3E-16		0.020493	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	15q13.3		rs58658771-A	NR	1E-8		1.242236	NR	Affymetrix [7846216] (imputed)	N
836	chr15	33001733	33001734	rs58658771	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	15q13.3		rs58658771-A	NR	5E-8		1.1641443	[1.1-1.23]	Affymetrix [7846216] (imputed)	N
836	chr15	33001733	33001734	rs58658771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q13.3		rs58658771-?	NR	2E-9				NR [~ 8900000] (imputed)	N
836	chr15	33001733	33001734	rs58658771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q13.3		rs58658771-?	NR	5E-11				NR [~ 8900000] (imputed)	N
836	chr15	33001733	33001734	rs58658771	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q13.3	GREM1	rs58658771-A	0.1937	6E-37		1.15	[1.13-1.18]	Affymetrix, Illumina [16900397] (imputed)	N
836	chr15	33001733	33001734	rs58658771	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Colorectal cancer	4,562 European ancestry cases, 382,756 European ancestry controls	NA	15q13.3	SCG5GREM1	rs58658771-A	0.179	1E-10				Affymetrix [28000000] (imputed)	N
836	chr15	33002863	33002864	rs148375239	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	4,680 European ancestry individuals	3,566 European ancestry individuals	15q13.3		rs148375239-T	0.474098361	5E-10				Illumina [7417619] (imputed)	N
836	chr15	33005874	33005875	rs1534594	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q13.3	NR	rs1534594-T	0.4765	6E-10				NR [9056863] (imputed)	N
836	chr15	33009477	33009478	rs1406389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	15q13.3		rs1406389-T	NR	3E-26		0.1179	[0.096-0.14] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
836	chr15	33010411	33010412	rs2293582	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	15q13.3	GREM1, SCG5	rs2293582-A	0.21	3E-11		1.21	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
836	chr15	33010735	33010736	rs2293581	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q13.3	GREM1	rs2293581-A	0.2116	9E-40		1.15	[1.13-1.17]	Affymetrix, Illumina [16900397] (imputed)	N
836	chr15	33011696	33011697	rs79207432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	15q13.3		rs79207432-C	NR	6E-14		0.1686	[0.12-0.21] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
836	chr15	33012231	33012232	rs11635984	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	15q13.3	GREM1	rs11635984-?	0.39070000000000005	4E-13		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
836	chr15	33012501	33012502	rs73376930	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q13.3	NR	rs73376930-G	NR	7E-35		1.18	[1.15-1.21]	Affymetrix, Illumina [> 10000000] (imputed)	N
836	chr15	33012501	33012502	rs73376930	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	15q13.3	NR	rs73376930-G	0.207	4E-18	(EA)	1.1363636	[1.1-1.18]	Affymetrix, Illumina [12931465] (imputed)	N
836	chr15	33012501	33012502	rs73376930	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	15q13.3	GREM1, SCG5	rs73376930-G	0.207	1E-11		1.246	[NR]	Illumina [NR] (imputed)	N
836	chr15	33023984	33023985	rs3743104	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	15q13.3	GREM1	rs3743104-G	0.554	6E-10		1.24	[NR]	Illumina [8207076] (imputed)	N
836	chr15	33025626	33025627	rs3743103	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	15q13.3	GREM1	rs3743103-?	NR	5E-25		0.038	[0.045-0.031] unit decrease	Illumina [12039491] (imputed)	N
837	chr15	33050422	33050423	rs1258763	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	15q13.3	NR	rs1258763-?	NR	2E-6	(Meta-All, NSCL/P)			NR [497084]	N
837	chr15	33050422	33050423	rs1258763	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	15q13.3	GREM1, FMN1	rs1258763-A	0.66	1E-6		1.52	[1.23-1.86]	Illumina [521288]	N
837	chr15	33057774	33057775	rs3817591	28754176	Wang Z	2017-07-28	Environ Health	Genome-wide gene by lead exposure interaction analysis identifies UNC5D as a candidate gene for neurodevelopment.	Motor development (prenatal lead exposure interaction)	390 Mexican children, 490 Bangladeshi children	NA	15q13.3	FMN1	rs3817591-?	NR	1E-6				Illumina [552487]	N
837	chr15	33077400	33077401	rs5024438	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	15q13.3	FMN1	rs5024438-G	0.79	3E-6	(female)	0.23	[0.13-0.33] unit increase	Illumina [7411206] (imputed)	N
837	chr15	33105729	33105730	rs16959063	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q13.3	NR	rs16959063-A	0.01	4E-8		1.3	[1.18-1.42]	Affymetrix, Illumina [> 10000000] (imputed)	N
837	chr15	33126453	33126454	rs1258767	24662972	Figueroa JD	2014-03-24	Carcinogenesis	Genome-wide interaction study of smoking and bladder cancer risk.	Bladder cancer (smoking interaction)	560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls	494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls	15q13.3	FMN1	rs1258767-?	NR	7E-7	(additive, retrospective analysis)			Illumina [491011]	N
837	chr15	33129321	33129322	rs16959442	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	15q13.3	NR	rs16959442-?	NR	4E-9				Illumina [at least 7383741] (imputed)	N
837	chr15	33143859	33143860	rs7164743	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q13.3	GREM1	rs7164743-?	NR	6E-6	(TAG 46:0)	0.60779893	[0.34-0.87] unit decrease	Affymetrix [at least 2500000] (imputed)	N
837	chr15	33156385	33156386	rs17816465	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q13.3	NR	rs17816465-A	0.2	1E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
837	chr15	33156385	33156386	rs17816465	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q13.3	GREM1	rs17816465-A	0.2055	7E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
838	chr15	33198250	33198251	rs11637250	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	15q13.3	NR	rs11637250-?		6E-6		2.51	[1.69-3.75]	Illumina [539473] (imputed)	N
838	chr15	33228333	33228334	rs12899881	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q13.3		rs12899881-A	0.34	1E-10		6.41	z score increase	Affymetrix [9061022] (imputed)	N
838	chr15	33258473	33258473	rs137862450	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	15q13.3	NR	rs137862450-GT	0.04977	3E-6		0.3251	[0.19-0.46] unit increase	Illumina [10677593] (imputed)	N
838	chr15	33260972	33260973	rs150962800	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	15q13.3	FMN1	rs150962800-C	0.9826455	1E-18				Affymetrix, Illumina [NR] (imputed)	N
838	chr15	33260972	33260973	rs150962800	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	15q13.3	FMN1	rs150962800-C	0.973812	4E-9		0.92302614	NR	Affymetrix [~ 9600000] (imputed)	N
838	chr15	33260972	33260973	rs150962800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q13.3		rs150962800-?	NR	5E-11				NR [~ 8900000] (imputed)	N
838	chr15	33260972	33260973	rs150962800	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q13.3	NR	rs150962800-T	0.026358	1E-13		0.071911	[0.053-0.091] unit decrease	NR [19129689] (imputed)	N
838	chr15	33276214	33276215	rs76546227	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	15q13.3	FMN1	rs76546227-?		9E-7	(PCB138/PCB158)	0.59	[0.35-0.83] unit decrease	Affymetrix [629686]	N
838	chr15	33276214	33276215	rs76546227	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	15q13.3	FMN1	rs76546227-?		1E-6	(PCB153)	0.55	[0.33-0.77] unit decrease	Affymetrix [629686]	N
838	chr15	33277709	33277710	rs117648907	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	15q13.3	SNORD77	rs117648907-T	0.0174	7E-12		1.2439358	NR	Affymetrix, Illumina [NR] (imputed)	N
838	chr15	33277709	33277710	rs117648907	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	15q13.3	FMN1	rs117648907-?	NR	1E-10				Affymetrix, Illumina [7850345] (imputed)	N
838	chr15	33277709	33277710	rs117648907	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	15q13.3	FMN1	rs117648907-?	NR	7E-6	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
839	chr15	33313664	33313665	rs35380582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q13.3	NR	rs35380582-C	0.180348	5E-16		0.019566	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
839	chr15	33313664	33313665	rs35380582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q13.3	NR	rs35380582-C	0.180329	2E-18		0.021196	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
839	chr15	33315857	33315858	rs1454984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs1454984-C	0.154598	2E-18				Affymetrix, Illumina [24558453] (imputed)	N
839	chr15	33319033	33319034	rs34721455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs34721455-G	0.15282	6E-15				Affymetrix, Illumina [24332387] (imputed)	N
839	chr15	33319033	33319034	rs34721455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q13.3	NR	rs34721455-G	0.180364	1E-15		0.019231	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
839	chr15	33319033	33319034	rs34721455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q13.3	NR	rs34721455-G	0.15357	2E-15				Affymetrix, Illumina [24653286] (imputed)	N
839	chr15	33321464	33321464	rs552854632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q13.3		rs552854632-GA	NR	9E-15		0.0179	[0.013-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
839	chr15	33321464	33321464	rs552854632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q13.3		rs552854632-GA	NR	2E-16		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
839	chr15	33324279	33324280	rs17816693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q13.3	FMN1	rs17816693-T	0.179381	1E-13		0.021414388	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
839	chr15	33324279	33324280	rs17816693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q13.3	FMN1	rs17816693-T	0.179382	2E-13		0.021186965	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
839	chr15	33324279	33324280	rs17816693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q13.3	FMN1	rs17816693-T	0.17937	2E-16		0.023702148	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
839	chr15	33324279	33324280	rs17816693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q13.3		rs17816693-?	NR	2E-12				NR [~ 8900000] (imputed)	N
839	chr15	33334111	33334113	rs397799546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q13.3		rs397799546-T	NR	2E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
839	chr15	33342542	33342543	rs345747	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q13.3	NR	rs345747-A	0.75	5E-11		0.0138	[0.0096-0.018] unit increase	NR [NR]	N
839	chr15	33366470	33366471	rs8029843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q13.3		rs8029843-T	NR	1E-11		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
839	chr15	33390666	33390667	rs1026752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q13.3		rs1026752-?	NR	7E-11				NR [~ 8900000] (imputed)	N
839	chr15	33401509	33401510	rs141883130	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q13.3	NR	rs141883130-G	0.01045	4E-9	(TNC)	0.07246	NR unit increase	Illumina [1671387] (imputed)	N
840	chr15	33438061	33438062	rs2061075	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	15q13.3	NR	rs2061075-?	NR	3E-6		0.10549408	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
840	chr15	33481943	33481944	rs11072312	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	15q13.3	NR	rs11072312-A	0.86	2E-6	(EA)	3.37	[2.02-4.72] bpm decrease	Illumina [at least 1100000] (imputed)	N
840	chr15	33484336	33484337	rs4780091	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	15q13.3	NR	rs4780091-C	0.86	5E-6	(EA)	3.32	[1.95-4.69] bpm decrease	Illumina [at least 1100000] (imputed)	N
840	chr15	33493220	33493221	rs6494964	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q13.3	NR	rs6494964-G	0.686050906432748	6E-6	(IGP2)	0.1846	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
840	chr15	33493220	33493221	rs6494964	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q13.3	NR	rs6494964-G	0.685883860674157	8E-6	(IGP42)	0.1819	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
840	chr15	33494077	33494078	rs140272046	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	15q13.3	FMN1, RYR3	rs140272046-A	0.042	1E-8		33.38	[21.84-44.92] unit increase	Illumina [4962728] (imputed)	N
840	chr15	33505066	33505067	rs974379	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	15q13.3	FMN1	rs974379-C	0.075	8E-6	(% improvement - 2 weeks)	1.2872	[1.17-1.4]	Affymetrix, Illumina [1200000] (imputed)	N
840	chr15	33528267	33528268	rs8025470	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q13.3	NR	rs8025470-A	NR	8E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
840	chr15	33540116	33540117	rs4779614	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	15q13.3	TMCO5B	rs4779614-T	0.35	4E-7		0.0869	[0.069-0.105] unit increase	Affymetrix, Illumina [8578107] (imputed)	N
841	chr15	33564481	33564482	rs8035094	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	15q13.3	intergenic	rs8035094-?		5E-6	(disease-free survival)	2.68	[1.75-4.09]	Illumina [729737]	N
841	chr15	33575317	33575318	rs199553440	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	15q13.3	RYR3	rs199553440-CT	0.3376	2E-6		0.1338	[0.079-0.189] unit increase	Illumina [up to 38043574] (imputed)	N
841	chr15	33575317	33575318	rs199553440	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	15q13.3	RYR3	rs199553440-CT	0.3359	7E-6	(Subset)	0.1388	[0.078-0.2] unit increase	Illumina [up to 38043574] (imputed)	N
841	chr15	33575506	33575507	rs4534807	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q13.3	NR	rs4534807-C	NR	3E-6	(LME model)	0.47135	[0.27-0.67] unit increase	NR [NR] (imputed)	N
841	chr15	33597075	33597076	rs2676071	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q13.3	RYR3	rs2676071-T	0.58	7E-6	(Age 20-81 years)	0.0443	[0.025-0.064] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
842	chr15	33720725	33720726	rs2596230	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	15q14	NR	rs2596230-G	0.14	9E-6	(African American, additive)	1.56	1.28-1.89	Affymetrix [NR]	N
842	chr15	33757739	33757740	rs76528668	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q14	RYR3	rs76528668-T	NR	9E-6	(East Asian)	1.161	[1.08-1.24]	Illumina [6627481] (imputed)	N
842	chr15	33800748	33800749	rs112044143	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	15q14	NR	rs112044143-?	NR	6E-6		0.01454	[0.0083-0.0208] unit decrease	Affymetrix [9658292] (imputed)	N
843	chr15	33829442	33829443	rs148485629	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	15q14	RYR3	rs148485629-A	0.022	1E-6		4.04	[2.46-6.62] (HR)	Illumina [11220132] (imputed)	N
843	chr15	33838411	33838412	rs78474432	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs78474432-G	0.01045	3E-8	(HP)	6.397	NR unit increase	Illumina [1671387] (imputed)	N
843	chr15	33838411	33838412	rs78474432	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs78474432-G	0.01045	2E-9	(EMILIN2)	0.1934	NR unit increase	Illumina [1671387] (imputed)	N
843	chr15	33847379	33847380	rs11072541	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs11072541-?	NR	2E-8				Affymetrix [NR]	N
843	chr15	33905409	33905410	rs2229116	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA	15q14	RYR3	rs2229116-G	0.18	3E-8	(common cIMT)			Illumina [311194]	N
843	chr15	33906599	33906600	rs16973282	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs16973282-?	NR	1E-7				Affymetrix [NR]	N
844	chr15	33953089	33953090	rs4780141	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	15q14	NR	rs4780141-T	0.0411	1E-6	(Trans/trans-18:2, EA)	0.0028	[0.0016-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
844	chr15	33953907	33953908	rs7181696	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	15q14	NR	rs7181696-T	0.0407	1E-6	(Trans/trans-18:2, EA)	0.0028	[0.0016-0.004] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
844	chr15	33953940	33953941	rs7174989	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	15q14	NR	rs7174989-A	0.9595	1E-6	(Trans/trans-18:2, EA)	0.0028	[0.0016-0.004] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
844	chr15	33954651	33954652	rs4780144	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	15q14	NR	rs4780144-T	0.961	2E-6	(Trans/trans-18:2, EA)	0.0027	[0.0015-0.0039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
844	chr15	33990619	33990620	rs17817518	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	15q14		rs17817518-A	NR	3E-6		0.4307	[0.25-0.61] unit decrease	NR [534934]	N
844	chr15	34016111	34016112	rs12441184	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q14	RYR3	rs12441184-G	0.0194354388625337	3E-6	(G_unclassified_P_Proteobacteria_RNT)	0.601771	[0.35-0.85] unit increase	Illumina [7711310] (imputed)	N
844	chr15	34019748	34019749	rs7165379	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	15q14	NR	rs7165379-?	NR	7E-6		0.2056	[0.12-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
844	chr15	34056762	34056763	rs78319531	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs78319531-G	0.01916	3E-8	(HP)	4.021	NR unit increase	Illumina [1671387] (imputed)	N
844	chr15	34056762	34056763	rs78319531	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs78319531-G	0.01916	3E-8	(EMILIN2)	0.1136	NR unit increase	Illumina [1671387] (imputed)	N
845	chr15	34132387	34132388	rs72716818	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q14	RYR3	rs72716818-?		1E-6				Illumina [4322238] (imputed)	N
845	chr15	34196846	34196847	rs187108425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	15q14		rs187108425-T	NR	4E-8		0.3391	[0.22-0.46] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
846	chr15	34243528	34243529	rs116830894	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	15q14	AVEN, CHRM5, RYR3, EMC7, PGBD4	rs116830894-?		5E-6	(additive)	0.256	[0.15-0.37] unit decrease	Illumina [1492601] (imputed)	N
846	chr15	34243528	34243529	rs116830894	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	15q14	AVEN, CHRM5, RYR3, EMC7, PGBD4	rs116830894-?		3E-6	(heterogeneous)	0.274	[0.16-0.39] unit decrease	Illumina [1492601] (imputed)	N
846	chr15	34243528	34243529	rs116830894	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	15q14	AVEN, CHRM5, RYR3, EMC7, PGBD4	rs116830894-?		3E-6	(dominant)	0.272	[NR] unit decrease	Illumina [1492601] (imputed)	N
846	chr15	34260719	34260720	rs193168841	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q14		rs193168841-A	NR	3E-6		1.97408		Affymetrix, Illumina [62056310] (imputed)	N
846	chr15	34314040	34314041	rs5016373	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	15q14	NR	rs5016373-C	0.35	6E-6		1.1627907	[1.09-1.25]	NR [8807005] (imputed)	N
847	chr15	34396912	34396913	rs9972552	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	15q14	NR	rs9972552-A	0.02	1E-6		2.18	1.59-2.98	NR [8482392] (imputed)	N
848	chr15	34523820	34523821	rs181064062	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs181064062-T	0.01394	1E-8	(GARS)	0.04314	NR unit increase	Illumina [1671387] (imputed)	N
848	chr15	34543179	34543180	rs140916001	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs140916001-C		4E-8		0.31	[0.19-0.43] unit increase	NR [NR]	N
849	chr15	34614256	34614257	rs7176426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q14		rs7176426-?	NR	1E-7				NR [~ 8900000] (imputed)	N
849	chr15	34624437	34624438	rs11631094	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Barrett's esophagus x pack-years of smoking exposure interaction	3,104 European ancestry cases, 2,182 European ancestry controls	NA	15q14	SLC12A6	rs11631094-C	0.71	3E-7		1.01		Illumina [993501]	N
849	chr15	34626138	34626139	rs8039126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q14	NR	rs8039126-T	0.707577	2E-11		0.014213	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
849	chr15	34659516	34659517	rs117799466	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q14	LPCAT4	rs117799466-?	NR	8E-10		0.013453722	[0.0092-0.0177] unit decrease	NR [7306098]	N
849	chr15	34659516	34659517	rs117799466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q14		rs117799466-?	NR	6E-9				NR [~ 8900000] (imputed)	N
849	chr15	34659516	34659517	rs117799466	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q14		rs117799466-C	0.3619	1E-11		0.0106	[0.0075-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
849	chr15	34659516	34659517	rs117799466	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q14	Intergenic	rs117799466-C	0.3619	2E-11	(MTAG)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
849	chr15	34659516	34659517	rs117799466	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q14	NR	rs117799466-C	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
849	chr15	34691254	34691255	rs566822643	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs566822643-C		4E-9		0.27	[0.17-0.37] unit increase	NR [NR]	N
851	chr15	34867561	34867562	rs2433267	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	15q14	SNORA18	rs2433267-A	0.93	5E-6		0.8	[0.47-1.13] unit increase	Illumina [5833901] (imputed)	N
851	chr15	34875944	34875945	rs2655327	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs2655327-C		1E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
851	chr15	34877508	34877509	rs4924045	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	15q14	NR	rs4924045-C	NR	3E-6		1.113	[1.064-1.164]	Illumina [6774630] (imputed)	N
851	chr15	34898065	34898066	rs76677753	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	15q14	GOLGA8B	rs76677753-A	0.99	8E-8	(BDRABS, AA)	0.25	[0.15-0.35] unit increase	Illumina [NR] (imputed)	N
851	chr15	34898065	34898066	rs76677753	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	15q14	GOLGA8B	rs76677753-A	0.99	2E-8	(BDRPRED, AA)	9.49	[6.22-12.76] unit increase	Illumina [NR] (imputed)	N
851	chr15	34915011	34915012	rs12440564	31930058	Niu LD	2019-11-01	Ann Transl Med	Genome-wide association study of cerebrospinal fluid neurofilament light levels in non-demented elders.	Cerebrospinal fluid neurofilament light levels	263 European ancestry individuals	NA	15q14	GOLGA8B	rs12440564-?	0.1613	3E-7		0.5817	[0.3650-0.7984] unit increase	Illumina [441611]	N
851	chr15	34970672	34970673	rs4923735	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs4923735-T		3E-8		0.1	[0.061-0.139] unit increase	NR [NR]	N
851	chr15	34976869	34976870	rs6495706	25138779	Mitchell LE	2014-08-18	Hum Mol Genet	Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.	Congenital left-sided heart lesions	284 European ancestry case-parent trios, up to 93 case-parent trios	216 European ancestry case-parent trios, 8 case-parent trios	15q14	GJD2	rs6495706-?	0.94	9E-6	(EA)	2.13	[1.52-3.03]	Illumina [1712604] (imputed)	N
851	chr15	34984882	34984883	rs1370156	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Myopia	3,923 European ancestry cases, 11,696 European ancestry controls	1,410 European ancestry cases, 2,921 cases, 3,171 European ancestry controls, 998 controls	15q14	GJD2	rs1370156-?		2E-7				Affymetrix, Illumina [up to 3397980] (imputed)	N
851	chr15	34989625	34989626	rs11073058	25823570	Miyake M	2015-03-31	Nat Commun	Identification of myopia-associated WNT7B polymorphisms provides insights into the mechanism underlying the development of myopia.	Axial length	Up to 3,248 Japanese ancestry individuals	3,460 Japanese ancestry individuals	15q14	GJD2	rs11073058-T	0.473	2E-8		0.09	[0.031-0.149] unit increase	Illumina [1773334] (imputed)	N
851	chr15	34989625	34989626	rs11073058	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	15q14	GJD2, ACTC1	rs11073058-T	0.4532	4E-11		0.0661	[0.047-0.086] unit increase	Illumina [2500000] (imputed)	N
851	chr15	34989850	34989851	rs11073060	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Hyperopia	7,068 European ancestry cases, 6,844 European ancestry controls	1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls	15q14	GJD2	rs11073060-?		9E-11				Affymetrix, Illumina [up to 3397980] (imputed)	N
852	chr15	35001441	35001442	rs589135	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	15q14	GJD2	rs589135-G	0.418	1E-11		1.29	NR	Affymetrix, Illumina [4996193] (imputed)	N
852	chr15	35003308	35003309	rs678510	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	15q14	NR	rs678510-?	NR	4E-12		0.122996	[0.088-0.158] unit increase	NR [13958389] (imputed)	N
852	chr15	35005638	35005639	rs72720485	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs72720485-T		1E-11		0.26	[0.18-0.34] unit increase	NR [NR]	N
852	chr15	35005885	35005886	rs524952	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q14	GOLGA8B, GJD2	rs524952-?	NR	1E-29		0.231302	[0.19-0.27] unit increase	NR [13958389] (imputed)	N
852	chr15	35005885	35005886	rs524952	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	15q14	GOLGA8B, GJD2	rs524952-?	NR	5E-26		0.286396	[0.23-0.34] unit increase	NR [13958389] (imputed)	N
852	chr15	35005885	35005886	rs524952	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs524952-T		1E-104		0.24	[0.22-0.26] unit increase	NR [NR]	N
852	chr15	35005885	35005886	rs524952	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q14	GOLGA8B, GJD2, ACTC1, ZNF770	rs524952-?		2E-245				Affymetrix, Illumina [NR] (imputed)	N
852	chr15	35005885	35005886	rs524952	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	15q14	GOLGA8B, GJD2	rs524952-?	0.483	1E-24		1.3275276	[1.26-1.4]	Affymetrix [NR] (imputed)	N
852	chr15	35005885	35005886	rs524952	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q14	GOLGA8B, GJD2	rs524952-A	0.4748	2E-65		17.075	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
852	chr15	35005885	35005886	rs524952	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q14	NR	rs524952-A	0.4702	2E-27	(EA)	0.1611	[0.13-0.19] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
852	chr15	35005885	35005886	rs524952	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	15q14	NR	rs524952-A	0.4719	5E-45		0.099	[0.085-0.113] unit decrease	Illumina [~ 10600000] (imputed)	N
852	chr15	35005885	35005886	rs524952	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	15q14	GOLGA8B, GJD2	rs524952-?	NR	4E-62		1.1286682	[1.11-1.14]	Illumina [13762925] (imputed)	N
852	chr15	35005885	35005886	rs524952	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q14	GJD2	rs524952-A	0.47	2E-23	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
852	chr15	35005885	35005886	rs524952	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q14	GJD2	rs524952-A	0.46	1E-25				Affymetrix, Illumina [up to 7331415] (imputed)	N
852	chr15	35005885	35005886	rs524952	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	15q14	GJD2	rs524952-A	0.48	1E-15		0.158	[0.12-0.2] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
852	chr15	35006072	35006073	rs634990	20835239	Solouki AM	2010-09-12	Nat Genet	A genome-wide association study identifies a susceptibility locus for refractive errors and myopia at 15q14.	Refractive error	5,328 European ancestry individuals	10,280 European ancestry individuals	15q14	GJD2, GOLGA8B, ACTC1	rs634990-C	0.47	2E-14		0.23	[0.228-0.232] diopter increase	Illumina [~ 2500000] (imputed)	N
852	chr15	35008334	35008335	rs685352	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	15q14	NR	rs685352-?	NR	5E-12		0.123032	[0.088-0.158] unit decrease	NR [13958389] (imputed)	N
852	chr15	35009675	35009676	rs670352	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q14	NR	rs670352-A	0.4376	3E-28		0.1468	[0.12-0.17] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
852	chr15	35022387	35022388	rs117010584	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs117010584-C		1E-14		0.19	[0.15-0.23] unit increase	NR [NR]	N
852	chr15	35029327	35029328	rs76891353	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs76891353-G		1E-9		0.2	[0.14-0.26] unit increase	NR [NR]	N
852	chr15	35031538	35031539	rs568613	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs568613-G		3E-14		0.09	[0.07-0.11] unit increase	NR [NR]	N
852	chr15	35032970	35032970	rs138402383	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q14		rs138402383-AACAC	0.6131	2E-6		0.033041	[0.019-0.047] unit increase	Affymetrix [15580782] (imputed)	N
852	chr15	35035865	35035866	rs60924036	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (sleepiness)	1,902 Japanese ancestry female cases, 3,832 Japanese ancestry female controls	1,934 Japanese ancestry female cases, 3,680 Japanese ancestry female controls	15q14	NR	rs60924036-G	0.321933348	8E-6		0.13361064	[0.075-0.192] unit increase	Affymetrix [536506]	N
852	chr15	35060462	35060463	rs12232346	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	15q14	AK092087	rs12232346-?	NR	2E-6			[NR]	Illumina [up to 5616481] (imputed)	N
852	chr15	35066184	35066185	rs12900860	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs12900860-G		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
852	chr15	35105656	35105657	rs11852984	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide behavior	577 European ancestry cases, 1,233 European ancestry controls	NA	15q14	intergenic	rs11852984-C	0.2	2E-6		1.802	[1.418-2.291]	Illumina [794207]	N
852	chr15	35121718	35121719	rs1402860	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q14	NR	rs1402860-T		2E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
853	chr15	35153929	35153930	rs12593818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q14	NR	rs12593818-T	0.262761	2E-11		0.00883108	[0.0061-0.0116] unit increase	Affymetrix [16585854] (imputed)	N
853	chr15	35153929	35153930	rs12593818	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q14	NR	rs12593818-T	0.262761	2E-10		0.00986085	[0.0067-0.013] unit increase	Affymetrix [16585866] (imputed)	N
853	chr15	35185602	35185603	rs4924339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q14	NR	rs4924339-G	NR	6E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
853	chr15	35232178	35232179	rs4924370	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High physical stress	8,104 Korean ancestry individuals	NA	15q14		rs4924370-A	NR	8E-7		1.2	[1.12-1.29]	Affymetrix [320700]	N
853	chr15	35253181	35253182	rs2305411	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	15q14	NR	rs2305411-C	NR	4E-9		0.01549	NR unit decrease	NR [7259579]	N
854	chr15	35285182	35285183	rs55800572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q14	NR	rs55800572-G	0.33940099999999995	7E-20		0.0078291	[0.0061-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
854	chr15	35285182	35285183	rs55800572	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q14	NR	rs55800572-G	0.33940099999999995	2E-18		0.00851013	[0.0066-0.0104] unit increase	Affymetrix [16582965] (imputed)	N
854	chr15	35302868	35302869	rs8038032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q14	NR	rs8038032-G	0.32248200000000005	7E-16		0.00955295	[0.0071-0.012] unit increase	Affymetrix [16582621] (imputed)	N
854	chr15	35302868	35302869	rs8038032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q14	NR	rs8038032-G	0.32248200000000005	1E-16		0.0106069	[0.008-0.0132] unit increase	Affymetrix [16582614] (imputed)	N
854	chr15	35312825	35312826	rs4924470	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	15q14	ZNF770	rs4924470-C	NR	9E-6		0.12	[0.067-0.173] unit decrease	Illumina [NR] (imputed)	N
854	chr15	35346540	35346541	rs10162694	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	15q14	ZNF770, LOC441722	rs10162694-A	0.08	9E-6	(Dominant model)	1.55	[NR]	Illumina [1795103]	N
854	chr15	35376832	35376833	rs139005963	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs139005963-G	0.02091	3E-8	(CPT2)	0.1776	NR unit increase	Illumina [1671387] (imputed)	N
854	chr15	35385812	35385813	rs111771723	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	15q14	NR	rs111771723-?	NR	7E-6		0.0545	[0.031-0.078] unit increase	Illumina [at least 560000] (imputed)	N
855	chr15	35432323	35432323	rs11417588	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q14	Intergenic	rs11417588-?	NR	5E-6	(women)	0.0210404	[0.012-0.03] unit increase	Illumina [13520550] (imputed)	N
856	chr15	35604501	35604502	rs16960773	28061514	Nannini DR	2017-01-01	Invest Ophthalmol Vis Sci	A Genome-Wide Association Study of Vertical Cup-Disc Ratio in a Latino Population.	Optic nerve measurement (cup-to-disc ratio)	3,596 Latino individuals	941 Latino individuals	15q14	DPH6, ZNF770	rs16960773-G	0.08	1E-6		0.23	[NR] unit decrease	Illumina [6844888] (imputed)	N
856	chr15	35625522	35625523	rs192516752	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q14	DPH6	rs192516752-A	0.0104004802333179	3E-6	(G_Collinsella_HB)	1.85034	[1.07-2.63] unit decrease	Illumina [7711310] (imputed)	N
857	chr15	35658431	35658432	rs368212009	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs368212009-C	0.0122	7E-9	(SPRYD4)	0.1468	NR unit increase	Illumina [1671387] (imputed)	N
858	chr15	35826858	35826859	rs7181610	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q14	NA	rs7181610-A	0.8553	5E-9		0.0146	[0.0097-0.0195] unit increase	NR [~ 27400000] (imputed)	N
858	chr15	35837296	35837297	rs8024137	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q14	NR	rs8024137-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
858	chr15	35837296	35837297	rs8024137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q14		rs8024137-?	NR	8E-9				NR [~ 8900000] (imputed)	N
858	chr15	35837296	35837297	rs8024137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q14	Intergenic	rs8024137-A	0.1449	2E-10	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
858	chr15	35849902	35849903	rs59006481	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q14	DPH6-AS1	rs59006481-?		3E-6				Illumina [4322238] (imputed)	N
858	chr15	35858582	35858583	rs6495785	24045676	Pyun JA	2013-09-16	Menopause	Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.	Menopause (age at onset)	1,827 Korean ancestry females	NA	15q14	AS1, ATPBD4	rs6495785-A	0.787	5E-6		0.69	[0.40-0.98] unit decrease	Affymetrix [343107]	N
859	chr15	35932166	35932167	rs78885963	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	15q14	NR	rs78885963-T	0.0540958	6E-6				Illumina [5378266] (imputed)	N
859	chr15	35933285	35933286	rs12906493	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	15q14	intergenic	rs12906493-?	NR	1E-9		0.0183225	[0.012-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
859	chr15	35940242	35940243	rs35000814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q14	Intergenic	rs35000814-A	0.8581	1E-8	(MTAG)	0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
859	chr15	35940242	35940243	rs35000814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q14	Intergenic	rs35000814-A	0.8579	5E-10		0.0202	[0.014-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
859	chr15	35950482	35950483	rs319889	32518416	Dawoud AAZ	2020-06-10	Leukemia	Clonal myelopoiesis in the UK Biobank cohort: ASXL1 mutations are strongly associated with smoking.	Myeloid clonal hematopoiesis	1,166 cases, 30,892 controls	NA	15q14	NR	rs319889-T	0.508	4E-6		1.2180268	NR	Affymetrix [265112]	N
859	chr15	36001393	36001394	rs74888443	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	15q14	DPH6-AS1	rs74888443-T	0.0535795741230304	3E-8		0.0604	[0.039-0.082] SD increase	Illumina [22400000] (imputed)	N
860	chr15	36047090	36047091	rs2454352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q14	NR	rs2454352-C	0.23856299999999997	2E-12		0.00677537	[0.0048-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
860	chr15	36047090	36047091	rs2454352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q14	NR	rs2454352-C	0.23856299999999997	2E-11		0.00711909	[0.0049-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
860	chr15	36049491	36049492	rs2947253	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		15q14	ATPBD4, RP11-702M1.1	rs2947253-G	0.11	4E-6		3.38	[2.01-5.68]	Illumina [518577]	N
860	chr15	36089972	36089973	rs140431251	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	15q14	DPH6, AS1	rs140431251-C	0.01	5E-7	(African American)	2.27	[1.39-3.15] unit increase	Illumina [up to 13042663] (imputed)	N
860	chr15	36105650	36105651	rs1826947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q14	NR	rs1826947-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
860	chr15	36105650	36105651	rs1826947	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q14	NR	rs1826947-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
860	chr15	36105650	36105651	rs1826947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q14		rs1826947-?	NR	7E-10				NR [~ 8900000] (imputed)	N
860	chr15	36126406	36126409	rs144328717	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	15q14	DPH6, C15orf41	rs144328717-?	NR	6E-17		1.1049724	[1.08-1.13]	Illumina [13729857] (imputed)	N
860	chr15	36127105	36127106	rs1989223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q14	Intergenic	rs1989223-T	0.74	4E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
861	chr15	36196924	36196925	rs76065397	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	15q14	ATPBD4-AS1, MIR4510	rs76065397-T	0.02	7E-7	(EA)	0.415	[0.25-0.58] unit increase	Illumina [~ 9000000] (imputed)	N
861	chr15	36196924	36196925	rs76065397	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	15q14	ATPBD4-AS1, MIR4510	rs76065397-T	0.02	1E-6		0.4024	[0.24-0.56] unit increase	Illumina [~ 9000000] (imputed)	N
861	chr15	36208997	36208998	rs996064	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	15q14		rs996064-T	0.06	4E-16		1.21	[1.16-1.26]	Affymetrix, Illumina [15838848] (imputed)	N
861	chr15	36208997	36208998	rs996064	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	15q14	DPH6, MEIS2	rs996064-T	0.06	3E-27		1.22	[1.17-1.26]	Affymetrix, Illumina [6864281] (imputed)	N
861	chr15	36242460	36242461	rs201487377	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	15q14	NR	rs201487377-C		4E-6		0.3946	[0.22-0.57] SD units decrease	NR [10700000] (imputed)	N
861	chr15	36264962	36264963	rs1510386	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q14	NR	rs1510386-C	0.47969022344798	2E-8		0.005197553	[0.0034-0.007] unit decrease	NR [NR]	N
861	chr15	36264962	36264963	rs1510386	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q14	NR	rs1510386-C	0.47969022344798	1E-8		0.008478208	[0.0056-0.0114] unit decrease	NR [NR]	N
861	chr15	36264962	36264963	rs1510386	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	15q14	NR	rs1510386-C	0.47969022344798	1E-8		0.0054460554	[0.0036-0.0073] unit decrease	NR [NR]	N
861	chr15	36293604	36293605	rs4923705	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	15q14	ATPBD4	rs4923705-C	0.27	2E-6		1.51	[NR]	Illumina [835136]	N
862	chr15	36313964	36313965	rs10520045	20673876	Rietschel M	2010-07-29	Biol Psychiatry	Genome-wide association-, replication-, and neuroimaging study implicates HOMER1 in the etiology of major depression.	Major depressive disorder	597 European ancestry cases, 1,295 European ancestry controls	409 European ancestry cases, 541 European ancestry controls	15q14	intergenic	rs10520045-T	0.27	7E-6		1.32	[1.17-1.50]	Illumina [491238]	N
862	chr15	36321261	36321262	rs529729593	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	15q14	RP11-184D12.1	rs529729593-A	0.0032	9E-6		0.3158	[0.18-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
862	chr15	36326017	36326018	rs12441039	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	15q14	MIR450	rs12441039-G	NR	3E-6		0.127	[0.074-0.18] unit decrease	Illumina [6319684] (imputed)	N
862	chr15	36344538	36344539	rs1912461	31090166	Lai D	2019-05-14	Genes Brain Behav	Genome-wide association studies of alcohol dependence, DSM-IV criterion count, and individual criteria.	Alcohol dependence (time spent drinking)	1,533 European ancestry cases, 546 African American cases, 5,776 European ancestry controls, 2,590 African American controls	1,022 European ancestry cases, 1,255 African American cases, 4,031 European ancestry controls, 1,685 African American controls	15q14	MIR4510, C15orf41	rs1912461-?	NR	2E-8	(EA)			Illumina [up to 8021023] (imputed)	N
862	chr15	36344789	36344790	rs1912459	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q14	NR	rs1912459-T	NR	5E-6	(conditioned on rs1426654)	0.262303	[0.15-0.37] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
862	chr15	36347197	36347198	rs7180705	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	15q14	NR	rs7180705-?	NR	5E-6		0.0645	[0.037-0.092] unit decrease	Illumina [at least 560000] (imputed)	N
862	chr15	36349392	36349393	rs201772025	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q14	intergenic	rs201772025-C	NR	8E-6				Illumina [up to 11995908] (imputed)	N
862	chr15	36349845	36349846	rs1898036	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q14	intergenic	rs1898036-?	0.1	2E-7	(CSJC , EA, RF-)	7.73	[NR] unit decrease	Illumina [534053]	N
862	chr15	36355867	36355868	rs1828385	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	15q14	NR	rs1828385-C	NR	1E-8		1.0309278		NR [NR] (imputed)	N
862	chr15	36391771	36391772	rs11636536	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	15q14	NA	rs11636536-T	0.4984	1E-9		0.0103	[0.007-0.0136] unit increase	NR [~ 27400000] (imputed)	N
862	chr15	36391964	36391965	rs11636611	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q14	NA	rs11636611-T	0.4981	9E-10		0.0104	[0.0071-0.0137] unit increase	NR [~ 27400000] (imputed)	N
862	chr15	36392561	36392562	rs11073147	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q14	NR	rs11073147-G	0.5396	4E-8		0.0252	[0.016-0.034] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
862	chr15	36399244	36399245	rs1435679	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q14		rs1435679-G	0.445	5E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
862	chr15	36399478	36399479	rs1435672	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q14	NR	rs1435672-C	0.56	3E-12		0.00755238	[0.0054-0.0097] unit increase	NR [9732723] (imputed)	N
862	chr15	36399478	36399479	rs1435672	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q14	NR	rs1435672-C	0.56	4E-8		0.014105118	[0.0091-0.0191] unit increase	NR [~ 10000000] (imputed)	N
862	chr15	36399478	36399479	rs1435672	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q14	NR	rs1435672-C	0.565	2E-9		0.00883551	[0.006-0.0117] unit decrease	NR [9732723] (imputed)	N
863	chr15	36456428	36456429	rs12901644	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q14		rs12901644-T	0.09288	4E-8		0.1685	[0.11-0.23] unit decrease	Illumina [18340221] (imputed)	N
863	chr15	36552602	36552603	rs34961041	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 31)	4,680 European ancestry individuals	3,566 European ancestry individuals	15q14		rs34961041-A	0.408133213	9E-14				Illumina [7417619] (imputed)	N
864	chr15	36594556	36594557	rs35636169	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q14	NA	rs35636169-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
864	chr15	36654389	36654390	rs78179393	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 53)	19,670 European ancestry individuals	NA	15q14		rs78179393-?	NR	3E-8				NR [9705931] (imputed)	N
864	chr15	36672947	36672948	rs566712229	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q14	NR	rs566712229-?	NR	7E-6		0.800187	[0.45-1.15] unit decrease	NR [13958389] (imputed)	N
865	chr15	36714605	36714606	rs115290532	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	15q14	COX6CP4	rs115290532-C	0.028	2E-6		2.508	[1.716-3.666]	Affymetrix, Illumina [14074516] (imputed)	N
865	chr15	36731308	36731309	rs28394790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q14		rs28394790-T	0.17	7E-16		8.07	z score increase	Affymetrix [9061022] (imputed)	N
865	chr15	36731308	36731309	rs28394790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q14		rs28394790-T	0.17	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
865	chr15	36731308	36731309	rs28394790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q14		rs28394790-T	0.17	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
865	chr15	36731308	36731309	rs28394790	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q14	NR	rs28394790-T	0.1681	9E-9				NR [9056863] (imputed)	N
865	chr15	36731308	36731309	rs28394790	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q14	NR	rs28394790-T	0.1681	1E-9				NR [9056863] (imputed)	N
865	chr15	36752336	36752337	rs7170339	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	15q14	NR	rs7170339-G		4E-6		0.4203	[0.24-0.6] SD units increase	NR [10700000] (imputed)	N
866	chr15	36835787	36835788	rs17705482	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	15q14	intergenic	rs17705482-T	NR	9E-6	(females)	0.11	[0.051-0.169] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
866	chr15	36847721	36847722	rs28819459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	15q14		rs28819459-A	NR	4E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
866	chr15	36847721	36847722	rs28819459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q14	NR	rs28819459-A	0.377539	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
866	chr15	36870193	36870194	rs12912029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q14		rs12912029-A	NR	9E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
866	chr15	36870193	36870194	rs12912029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q14	C15orf41	rs12912029-A	0.385032	1E-10		0.0134119	[0.0092-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr15	36870193	36870194	rs12912029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q14	NR	rs12912029-A	0.392794	1E-13				Affymetrix, Illumina [24246363] (imputed)	N
866	chr15	36870193	36870194	rs12912029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q14	NR	rs12912029-A	0.386333	2E-12		0.013154	[0.0095-0.0168] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
866	chr15	36870254	36870255	rs9972293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q14	C15orf41	rs9972293-C	0.384481	3E-19		0.020636205	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr15	36870254	36870255	rs9972293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q14	C15orf41	rs9972293-C	0.384332	2E-15		0.01847269	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr15	36870254	36870255	rs9972293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q14		rs9972293-?	NR	2E-9				NR [~ 8900000] (imputed)	N
866	chr15	36870254	36870255	rs9972293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q14		rs9972293-?	NR	5E-8				NR [~ 8900000] (imputed)	N
866	chr15	36871073	36871074	rs8037016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q14	C15orf41	rs8037016-G	0.385264	3E-15		0.01796198	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
866	chr15	36871237	36871238	rs6495841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q14	NR	rs6495841-G	0.386504	6E-11		0.012433	[0.0087-0.0162] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
866	chr15	36877195	36877196	rs12708542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q14	NR	rs12708542-T	0.617302	2E-14				Affymetrix, Illumina [22063850] (imputed)	N
866	chr15	36877195	36877196	rs12708542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q14	NR	rs12708542-T	0.614853	2E-14		0.014782	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	9E-9	(102 ms)	0.0320082	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	9E-12	(92 ms)	0.0385752	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	9E-11	(114 ms)	0.0352249	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	8E-11	(124 ms)	0.0362143	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	8E-10	(84 ms)	0.0338845	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	6E-9	(128 ms)	0.0325256	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	6E-11	(76 ms)	0.0369375	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	6E-11	(54 ms)	0.0370847	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	6E-11	(126 ms)	0.0361033	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	6E-10	(118 ms)	0.0331292	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	5E-9	(150 ms)	0.0317809	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	5E-11	(110 ms)	0.036113	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	4E-13	(88 ms)	0.0400319	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	4E-12	(86 ms)	0.0379901	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	4E-11	(108 ms)	0.0367466	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	4E-10	(74 ms)	0.0348978	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	4E-10	(52 ms)	0.0354098	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	3E-9	(134 ms)	0.0317279	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	3E-11	(98 ms)	0.0371622	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	3E-11	(96 ms)	0.0373327	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	3E-11	(94 ms)	0.0373028	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	3E-10	(116 ms)	0.0342951	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-9	(72 ms)	0.0330452	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-9	(122 ms)	0.033552	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-9	(120 ms)	0.0327939	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-9	(100 ms)	0.0331305	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-8	(62 ms)	0.0318025	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-8	(148 ms)	0.0306855	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-8	(140 ms)	0.0302975	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-11	(106 ms)	0.0368316	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-10	(78 ms)	0.0355646	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	2E-10	(112 ms)	0.0351482	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	1E-9	(132 ms)	0.0326943	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	1E-12	(90 ms)	0.0394932	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
866	chr15	36887019	36887019	rs34509141	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q14	C15orf41	rs34509141-A	0.420495	1E-10	(104 ms)	0.0357096	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
868	chr15	37193436	37193437	rs10851999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q14	NR	rs10851999-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
868	chr15	37203573	37203574	rs142544422	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBPL1	5,356 Icelandic ancestry individuals	NA	15q14		rs142544422-G	0.01264	3E-13		0.139561	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
869	chr15	37231342	37231343	rs141320753	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	15q14	NR	rs141320753-C		4E-6		0.4088	[0.23-0.59] SD units decrease	NR [10700000] (imputed)	N
869	chr15	37258614	37258615	rs16964414	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	15q14	MEIS2	rs16964414-A	0.07	2E-6		0.19	[0.11-0.27] unit decrease	Illumina [NR] (imputed)	N
869	chr15	37266313	37266314	rs74392999	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q14		rs74392999-A	0.1	4E-12		6.94	z score increase	Affymetrix [9061022] (imputed)	N
869	chr15	37266313	37266314	rs74392999	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q14	NR	rs74392999-A	0.1192	4E-13				NR [9056863] (imputed)	N
869	chr15	37278186	37278187	rs940094	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q14		rs940094-C	0.13	9E-19		8.84	z score increase	Affymetrix [9061022] (imputed)	N
869	chr15	37278186	37278187	rs940094	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 157)	19,670 European ancestry individuals	NA	15q14		rs940094-?	NR	1E-14				NR [9705931] (imputed)	N
869	chr15	37317544	37317545	rs11857187	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	15q14	MEIS2	rs11857187-?	NR	2E-6	(Gaussian-weighted model)			Illumina [501584]	N
869	chr15	37338106	37338107	rs11852650	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs11852650-?	NR	2E-8				Affymetrix [NR]	N
869	chr15	37342601	37342602	rs8041675	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	15q14	MEIS2	rs8041675-?	NR	4E-6	(count)			Perlegen [429981]	N
869	chr15	37347664	37347665	rs79238367	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q14	MEIS2	rs79238367-C	0.928	5E-6	(AA)	0.249	NR unit increase	Illumina [NR] (imputed)	N
869	chr15	37349801	37349802	rs1568679	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	15q14	MEIS2	rs1568679-?	0.103	1E-8	(risperidone-hip circumference)			Affymetrix [492900]	N
870	chr15	37375302	37375303	rs62045828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q14		rs62045828-?	NR	5E-8				NR [~ 8900000] (imputed)	N
870	chr15	37382418	37382419	rs2681312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q14	NR	rs2681312-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
870	chr15	37382418	37382419	rs2681312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q14	NR	rs2681312-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
870	chr15	37382418	37382419	rs2681312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q14		rs2681312-?	NR	3E-8				NR [~ 8900000] (imputed)	N
870	chr15	37383687	37383688	rs2701524	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	15q14		rs2701524-T	0.5871	5E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
870	chr15	37384283	37384284	rs2701523	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q14	NR	rs2701523-A	0.74	3E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix [2446094] (imputed)	N
870	chr15	37384283	37384284	rs2701523	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q14	NR	rs2701523-A	0.74	5E-8				Affymetrix [2446094] (imputed)	N
870	chr15	37404927	37404928	rs7167841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q14	Intergenic	rs7167841-A	0.7525	2E-9	(MTAG)	0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
870	chr15	37409282	37409283	rs35038739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q14	Intergenic	rs35038739-A	0.2421	4E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
870	chr15	37412971	37412972	rs2381966	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q14		rs2381966-A	0.7388	5E-8	(conditional-joint)	0.0087	[0.0056-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
870	chr15	37422825	37422826	rs16964713	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	15q14	MEIS2	rs16964713-?	0.197082	2E-6		1.38197	[1.208836-1.579902]	Affymetrix, Illumina [NR] (imputed)	N
870	chr15	37439234	37439235	rs2681320	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	15q14		rs2681320-A	NR	8E-6		2.33	[1.38-3.94]	Illumina [NR] (imputed)	N
870	chr15	37449618	37449619	rs17439560	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	15q14	intergenic	rs17439560-?	NR	4E-6	(SF10)			Affymetrix [5476100] (imputed)	N
871	chr15	37499170	37499171	rs184531260	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q14	NR	rs184531260-A	0.0113	4E-7	(EA)	0.21	[0.13-0.29] unit decrease	Illumina [~ 11800000] (imputed)	N
871	chr15	37500184	37500185	rs150978828	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q14	Intergenic	rs150978828-T	0.954	5E-6	(AA)	0.19	NR unit increase	Illumina [NR] (imputed)	N
872	chr15	37643830	37643831	rs8037355	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	15q14	NR	rs8037355-C	NR	4E-15		1.0309278		NR [NR] (imputed)	N
872	chr15	37643830	37643831	rs8037355	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	15q14	NR	rs8037355-C	0.4444	2E-18		1.0193679	[1.02-1.02]	NR [8098588] (imputed)	N
872	chr15	37648401	37648402	rs8025231	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	15q14	intergenic	rs8025231-C	0.43	2E-12		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
872	chr15	37648401	37648402	rs8025231	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	15q14	MEIS2, TMCO5A	rs8025231-C	0.427531	1E-8		0.0355	[0.024-0.047] unit increase	Illumina [1220000] (imputed)	N
872	chr15	37660048	37660049	rs587847	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	15q14	MEIS2	rs587847-C	0.38	1E-6		0.69	[0.42-0.96] mmHg decrease	Illumina [466573]	N
872	chr15	37678101	37678102	rs577008249	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q14		rs577008249-G	NR	5E-6		3.05079		Affymetrix, Illumina [62056310] (imputed)	N
872	chr15	37685266	37685267	rs631399	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	15q14	Intergenic	rs631399-?		7E-11				NR [6786993] (imputed)	N
872	chr15	37688629	37688630	rs4924156	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	15q14	LOC105370772	rs4924156-?	NR	2E-6				Illumina [501584]	N
872	chr15	37747348	37747349	rs1457257	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	15q14	NR	rs1457257-G	0.366	1E-8		1.035	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
873	chr15	37761909	37761910	rs28802424	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	15q14	NR	rs28802424-?		3E-8				NR [11140414]	N
873	chr15	37848223	37848224	rs10712478	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	15q14	NR	rs10712478-G	0.4397	3E-7		0.1563	[0.097-0.216] unit increase	Illumina [10677593] (imputed)	N
874	chr15	37912175	37912176	rs8025932	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs8025932-?	NR	3E-10				Affymetrix [NR]	N
874	chr15	37963097	37963098	rs11636777	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Marinilabiliaceae abundance in stool	5,959 Finnish ancestry individuals	NA	15q14		rs11636777-C	0.302265	2E-8		0.0273269	[0.018-0.037] unit decrease	Illumina [7980478] (imputed)	N
874	chr15	37973537	37973538	rs12442649	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	15q14	TMCO5A	rs12442649-G	NR	4E-8	(OTU15355 Dialister Species-level OTU)	1.49	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
875	chr15	38033955	38033956	rs28391580	31502714	Wang J	2019-09-10	Genet Epidemiol	Genome-wide association study of circulating folate one-carbon metabolites.	Blood metabolite levels	1,788 European ancestry individuals	NA	15q14	intergenic	rs28391580-T	0.27	3E-8	(cystathionine)	0.24	[0.16-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
875	chr15	38116669	38116670	rs11637011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q14		rs11637011-?	NR	5E-8				NR [~ 8900000] (imputed)	N
875	chr15	38117048	38117049	rs62048187	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q14	TMCO5A	rs62048187-G	0.682898	4E-8		0.00838898	[0.0054-0.0114] unit decrease	Affymetrix [12370749]	N
875	chr15	38119293	38119294	rs10852008	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	15q14	intergenic	rs10852008-?	NR	5E-9		0.0146485	[0.0097-0.0196] unit increase	Affymetrix [25921788] (imputed)	N
875	chr15	38129778	38129779	rs10152207	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	15q14	intergenic	rs10152207-?		5E-6	(overall survival)	3.06	[1.90-4.93]	Illumina [729737]	N
876	chr15	38153187	38153188	rs1502398	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	15q14	NR	rs1502398-?	NR	1E-7			[NR]	Illumina [5432814] (imputed)	N
876	chr15	38174013	38174014	rs8033434	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	15q14	intergenic	rs8033434-C	0.081	8E-6	(adjusted for sex and age)	1.667	[0.93-2.41] unit increase	Illumina [622468]	N
876	chr15	38193233	38193234	rs35216196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q14		rs35216196-?	NR	7E-9				NR [~ 8900000] (imputed)	N
876	chr15	38220390	38220391	rs4620914	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	15q14	TMCO5A	rs4620914-T	0.11	2E-7		0.095	[0.06-0.13] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
876	chr15	38240314	38240315	rs2959341	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	NASH resolution in nonalcoholic steatohepatitis	25 European ancestry cases, 116 European ancestry controls	NA	15q14	TMCO5A	rs2959341-?	NR	6E-6	(adjusted for age, gender and PCs)			Illumina [5417859] (imputed)	N
876	chr15	38271416	38271417	rs73390404	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs73390404-A	0.02265	3E-10	(VAPB)	0.05546	NR unit increase	Illumina [1671387] (imputed)	N
877	chr15	38327407	38327408	rs4635297	26861389	D'Adamo CR	2016-02-06	Nutrients	A Common Variant in the SETD7 Gene Predicts Serum Lycopene Concentrations.	Serum lycopene concentrations	441 Old Order Amish individuals from 308 families	NA	15q14	BC039545	rs4635297-A	0.08	6E-7		0.26	[0.16-0.36] ug/dL increase	Affymetrix [2302013] (imputed)	N
877	chr15	38334263	38334264	rs7176106	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	15q14	TMCO5A	rs7176106-A	0.474052	3E-7		0.0502	[0.031-0.069] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
877	chr15	38334263	38334264	rs7176106	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	15q14	TMCO5A	rs7176106-A	0.474052	2E-8		0.0489	[0.032-0.066] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
877	chr15	38340873	38340874	rs12442242	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q14	TMCO5A	rs12442242-A	0.8501	5E-10		0.0509	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
877	chr15	38344007	38344008	rs187260613	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q14	Intergenic	rs187260613-A	0.996	3E-6	(AA)	0.172	unit increase	Illumina [NR] (imputed)	N
877	chr15	38360288	38360289	rs16966212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q14		rs16966212-?	NR	7E-14				NR [~ 8900000] (imputed)	N
877	chr15	38362018	38362019	rs34633205	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q14	LINC01852	rs34633205-T	0.0685	4E-12		0.0264	[0.019-0.034] unit increase	Affymetrix [18391927] (imputed)	N
877	chr15	38397999	38398000	rs12324479	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q14	TMCO5	rs12324479-?	NR	6E-6	(tryptophan)	0.17128569	[0.097-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
878	chr15	38423729	38423730	rs16966271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q14	Intergenic	rs16966271-T	0.2868	1E-12	(MTAG)	0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
878	chr15	38423729	38423730	rs16966271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q14		rs16966271-T	0.2819	4E-9		0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
878	chr15	38423729	38423730	rs16966271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q14	Intergenic	rs16966271-T	0.2819	5E-12	(MTAG)	0.0101	[0.0072-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
878	chr15	38434890	38434891	rs10468092	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	15q14	NR	rs10468092-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
878	chr15	38464873	38464874	rs16966389	23646285	Khor SS	2013-04-16	PeerJ	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		15q14	SPRED1	rs16966389-G	0.642	7E-7	(dominant)	2.73	[1.82-4.10]	Affymetrix [508366] (imputed)	N
878	chr15	38469913	38469914	rs4547290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q14	Intergenic	rs4547290-C	0.4763	3E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
878	chr15	38482003	38482004	rs970498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q14		rs970498-?	NR	4E-22				NR [~ 8900000] (imputed)	N
878	chr15	38502338	38502338	rs34955201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q14		rs34955201-GCA	NR	7E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
878	chr15	38510455	38510456	rs2174008	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q14	AC087473.1	rs2174008-C	0.4975	6E-24		0.0192	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
878	chr15	38511982	38511983	rs16966460	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	15q14	SPRED1	rs16966460-?	NR	4E-6				Affymetrix [1769948] (imputed)	N
878	chr15	38511982	38511983	rs16966460	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q14	NR	rs16966460-G	0.10	4E-6		1.26	[NR]	Affymetrix [1769948] (imputed)	N
878	chr15	38513861	38513862	rs56074300	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q14	NR	rs56074300-?	NR	9E-6	(male)	0.16737	[0.094-0.241] unit increase	Affymetrix [7794483] (imputed)	N
878	chr15	38513861	38513862	rs56074300	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q14	NR	rs56074300-?	NR	2E-7	(female)	0.13572	[0.085-0.187] unit increase	Affymetrix [7794483] (imputed)	N
878	chr15	38513861	38513862	rs56074300	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q14	NR	rs56074300-?	NR	1E-10		0.15368	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
878	chr15	38515736	38515737	rs8030953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q14		rs8030953-T	NR	3E-13		0.0098	[0.0073-0.0123] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
878	chr15	38529171	38529172	rs1542900	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	15q14	SPRED1	rs1542900-?	NR	5E-6				Illumina [NR] (imputed)	N
878	chr15	38529171	38529172	rs1542900	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	15q14	SPRED1	rs1542900-?	NR	6E-6		2.9	[1.76-4.66]	Illumina [NR] (imputed)	N
879	chr15	38545724	38545725	rs3938236	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q14	SPRED1	rs3938236-?	NR	2E-8	(EA)	0.004418	[0.0015-0.0074] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
879	chr15	38546981	38546982	rs7175472	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs7175472-?	NR	6E-11				Affymetrix [NR]	N
879	chr15	38589653	38589654	rs79896452	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	15q14	SPRED1	rs79896452-?	NR	4E-6		0.26	[0.14-0.38] unit increase	Illumina [6319684] (imputed)	N
879	chr15	38626474	38626475	rs11853312	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	15q14	NR	rs11853312-A	0.11	1E-9		0.031	[0.021-0.041] z score decrease	Affymetrix [up to 10400000] (imputed)	N
879	chr15	38652031	38652032	rs6495962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q14	Intergenic	rs6495962-T	0.653	3E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
879	chr15	38662203	38662204	rs11635385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q14		rs11635385-?	NR	7E-16				NR [~ 8900000] (imputed)	N
880	chr15	38667116	38667117	rs75844534	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q14	SPRED1	rs75844534-A	0.123521	5E-11		0.02593	[0.018-0.034] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
880	chr15	38733846	38733847	rs8029989	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	15q14	FAM98B, RASGRP1	rs8029989-?		4E-6				Affymetrix [545513]	N
880	chr15	38764842	38764843	rs11073328	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	15q14	FAM98B, TYRO3	rs11073328-T	0.098	1E-14		1.935	[1.771-2.11]	Illumina [NR]	N
880	chr15	38782492	38782493	rs4313770	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	15q14	RASGRP1	rs4313770-?	NR	6E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
881	chr15	38820646	38820647	rs11073333	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q14	NR	rs11073333-G	0.4718	5E-11		0.0575	[0.04-0.075] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
881	chr15	38820646	38820647	rs11073333	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q14	RASGRP1	rs11073333-G	0.47	1E-10		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
881	chr15	38822904	38822905	rs7403531	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls		15q14	RASGRP1	rs7403531-T	0.33	6E-6		1.21	[1.11-1.31]	Illumina [NR] (imputed)	N
881	chr15	38822904	38822905	rs7403531	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	15q14	RASGRP1	rs7403531-T	0.346	4E-9		1.1	[1.06-1.13]	Illumina [2234194] (imputed)	N
881	chr15	38828139	38828140	rs8043085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q14		rs8043085-T	0.489114181	2E-9		0.055260904	[0.037-0.073] unit increase	Illumina [13429769] (imputed)	N
881	chr15	38828139	38828140	rs8043085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	15q14		rs8043085-T	NR	2E-17		0.0849	[0.065-0.105] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
881	chr15	38828139	38828140	rs8043085	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q14	NR	rs8043085-G	0.6975	9E-22		0.0407	[0.032-0.049] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
881	chr15	38828139	38828140	rs8043085	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q14	RASGRP1	rs8043085-T	0.449	2E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
881	chr15	38828139	38828140	rs8043085	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	15q14	RASGRP1	rs8043085-T	0.232174	2E-18		0.09480068	[0.074-0.116] unit increase	Affymetrix [7288503] (imputed)	N
881	chr15	38828139	38828140	rs8043085	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	15q14	RASGRP1	rs8043085-T	0.235	2E-9		1.1194427		Illumina [252970]	N
881	chr15	38828139	38828140	rs8043085	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	15q14	RASGRP1	rs8043085-T	NA	2E-8				Illumina [252970]	N
881	chr15	38828139	38828140	rs8043085	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	15q14	RASGRP1	rs8043085-A	0.25	5E-11		1.1713	(Immunochip only)	Illumina [129464] (imputed)	N
881	chr15	38828139	38828140	rs8043085	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	15q14	RASGRP1	rs8043085-A	0.25	2E-8				Illumina [129464] (imputed)	N
881	chr15	38830251	38830252	rs138642871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q14		rs138642871-A	NR	4E-9		0.0247	[0.016-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
881	chr15	38831749	38831750	rs5812044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q14	NR	rs5812044-G	NR	1E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
881	chr15	38834032	38834033	rs8032939	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	15q14		rs8032939-T	NR	5E-24		0.88	[0.86-0.9]	NR [13810676] (imputed)	N
881	chr15	38834032	38834033	rs8032939	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	15q14	RASGRP1	rs8032939-?		1E-9		0.86	[0.81-0.90]	Illumina [NR] (imputed)	N
881	chr15	38834032	38834033	rs8032939	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	15q14	RASGRP1	rs8032939-T	NR	3E-16		0.117174	[0.089-0.145] unit decrease	Illumina [8380626] (imputed)	N
881	chr15	38834032	38834033	rs8032939	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	15q14	RASGRP1	rs8032939-T	0.75	2E-12	(EA)	0.12131	[0.087-0.155] unit decrease	Illumina [8380626] (imputed)	N
881	chr15	38834032	38834033	rs8032939	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q14	RASGRP1	rs8032939-C	0.246	4E-14		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
881	chr15	38834032	38834033	rs8032939	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	15q14	RASGRP1	rs8032939-G	0.74	2E-17		1.1627907	[1.12-1.19]	Illumina [133816] (imputed)	N
881	chr15	38834032	38834033	rs8032939	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	RASGRP1	rs8032939-C	0.6	9E-6	(East Asian)	1.12	[1.06-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
881	chr15	38834032	38834033	rs8032939	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	RASGRP1	rs8032939-C	0.35	2E-18		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
881	chr15	38834032	38834033	rs8032939	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q14	RASGRP1	rs8032939-C	0.25	3E-14	(EA)	1.13	[1.09-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
881	chr15	38836776	38836777	rs56059718	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	15q14		rs56059718-?	NR	9E-10		0.0227	unit increase	NR [NR]	N
881	chr15	38838263	38838264	rs8035957	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	15q14	RASGRP1, Y_RNA	rs8035957-C	0.255345	3E-6		1.227	[1.126 - 1.337]	Illumina [5397657] (imputed)	N
881	chr15	38838263	38838264	rs8035957	18840781	Grant SF	2008-10-07	Diabetes	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	15q14	RASGRP1	rs8035957-C	NR	4E-6		1.14	[1.08-1.21]	Illumina [up to 1000000]	N
881	chr15	38843886	38843887	rs28582094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q14		rs28582094-G	NR	2E-9		0.0475	[0.032-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
881	chr15	38844105	38844106	rs12593201	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	15q14		rs12593201-A	NR	8E-16		0.0905	[0.069-0.112] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
881	chr15	38846346	38846347	rs36027443	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q14		rs36027443-A	0.496178281	4E-11		1.0558116	[1.038952718-1.072944246]	Illumina [8919992] (imputed)	N
881	chr15	38846677	38846678	rs7170151	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	15q14	RASGRP1	rs7170151-T	0.563	3E-12		1.107	[1.08-1.14]	Illumina [11270530] (imputed)	N
881	chr15	38846737	38846738	rs4924273	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	15q14	RASGRP1	rs4924273-G	0.26	1E-6		1.07	[1.04-1.09]	Illumina [161311]	N
881	chr15	38847021	38847022	rs72727394	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q14	NR	rs72727394-?	NR	5E-12	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
881	chr15	38847021	38847022	rs72727394	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	15q14	RASGRP1	rs72727394-T	0.19	4E-10		1.15		Illumina [135870]	N
881	chr15	38847762	38847763	rs11073337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	15q14		rs11073337-?	NR	5E-16				NR [~ 8900000] (imputed)	N
881	chr15	38847762	38847763	rs11073337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	15q14		rs11073337-?	NR	1E-12				NR [~ 8900000] (imputed)	N
881	chr15	38850329	38850330	rs7173565	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	15q14	RASGRP1	rs7173565-C	0.271	9E-18		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
881	chr15	38852385	38852386	rs12912777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	15q14	NR	rs12912777-T	NR	1E-9		0.0226	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
881	chr15	38852385	38852386	rs12912777	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q14	NR	rs12912777-C	0.8791	2E-15		0.0594	[0.045-0.074] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
881	chr15	38873114	38873115	rs34715063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q14		rs34715063-C	NR	1E-11		0.0898	[0.064-0.116] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
881	chr15	38873114	38873115	rs34715063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q14		rs34715063-C	NR	4E-10		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
881	chr15	38873114	38873115	rs34715063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	15q14		rs34715063-?	NR	2E-13				NR [~ 8900000] (imputed)	N
881	chr15	38873114	38873115	rs34715063	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q14	RASGRP1	rs34715063-C	0.1235	2E-19		1.1	[1.07-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
881	chr15	38888772	38888773	rs1355870272	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	15q14		rs1355870272-?	NR	7E-6				Illumina [7401356] (imputed)	N
881	chr15	38897856	38897857	rs12912299	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q14	NR	rs12912299-C	0.5107	4E-13		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
881	chr15	38897856	38897857	rs12912299	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q14	NA	rs12912299-C	0.5145	8E-9	(Female)	1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
881	chr15	38899189	38899190	rs16967103	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	15q14	RASGRP1	rs16967103-?		1E-6				Illumina [9560910] (imputed)	N
881	chr15	38899189	38899190	rs16967103	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	15q14	intergenic	rs16967103-?	NR	5E-9	(subset analysis)			Illumina [130052]	N
881	chr15	38899189	38899190	rs16967103	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q14	NR	rs16967103-G	0.1937	4E-7	(EA)	1.0664214	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
881	chr15	38899189	38899190	rs16967103	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	15q14	SPRED1, RASGRP1	rs16967103-C	0.203	4E-9		1.088	[1.045-1.132]	Affymetrix, Illumina [1230000] (imputed)	N
881	chr15	38904526	38904527	rs62006172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q14		rs62006172-A	0.042246	2E-12		0.03872234	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr15	38904526	38904527	rs62006172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q14		rs62006172-A	0.042244	1E-12		0.0391569	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr15	38904526	38904527	rs62006172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q14	NR	rs62006172-A	0.0403937	2E-11				Affymetrix, Illumina [19872809] (imputed)	N
881	chr15	38904526	38904527	rs62006172	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q14	NR	rs62006172-A	0.041969	5E-14		0.037536	[0.028-0.047] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
881	chr15	38904526	38904527	rs62006172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q14		rs62006172-?	NR	7E-13				NR [~ 8900000] (imputed)	N
881	chr15	38907040	38907041	rs7171171	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	15q14	RASGRP1	rs7171171-G	NR	2E-7				Affymetrix, Illumina [NR]	N
881	chr15	38918031	38918032	rs883625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q14	Intergenic	rs883625-T	0.1967	3E-8	(MTAG)	0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
881	chr15	38919963	38919964	rs59659806	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	15q14	NR	rs59659806-T	NR	5E-6		4.563033	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
881	chr15	38924502	38924503	rs57731910	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	15q14		rs57731910-?	NR	2E-7				Illumina [7401356] (imputed)	N
882	chr15	38930960	38930961	rs9972513	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	15q14	RP11-275I4.2	rs9972513-T	0.281296	6E-6		0.024732	[0.014-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
882	chr15	38962755	38962756	rs1874252	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	15q14	RASGRP1	rs1874252-?	NR	9E-6	(Hispanic)	1.369863	[1.19-1.56]	Illumina [at least 5000000] (imputed)	N
882	chr15	38962755	38962756	rs1874252	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	15q14	NR	rs1874252-G	0.69	7E-6		1.32	[1.20-1.44]	Illumina [4058415] (imputed)	N
882	chr15	38969544	38969545	rs6495988	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	15q14	NR	rs6495988-C	0.778	1E-9		1.09286	[1.06-1.12]	Affymetrix, Illumina [7549318] (imputed)	N
882	chr15	38973792	38973793	rs35958438	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	15q14	C15orf53	rs35958438-G	0.772	4E-8		1.06631	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
882	chr15	38973792	38973793	rs35958438	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	15q14	NR	rs35958438-G	0.776	1E-8		1.1116052	[NR]	NR [9372253] (imputed)	N
882	chr15	38974547	38974548	rs12900640	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	15q14	NR	rs12900640-A	0.464	2E-11		1.101	[1.07-1.13]	Illumina [11270530] (imputed)	N
882	chr15	38986367	38986368	rs12912251	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	15q14	C15orf53	rs12912251-G	NR	3E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
882	chr15	38986367	38986368	rs12912251	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	15q14	C15orf53	rs12912251-?	NR	1E-6				Affymetrix, Perlegen [1472580] (imputed)	N
882	chr15	38986812	38986813	rs12898460	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	15q14		rs12898460-?	NR	2E-9		0.0211	NR unit decrease	NR [5637374] (imputed)	N
882	chr15	38986812	38986813	rs12898460	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	15q14	C15orf53	rs12898460-?		4E-8				NR [6786993] (imputed)	N
882	chr15	38986812	38986813	rs12898460	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	15q14	C15orf53	rs12898460-C	0.69	3E-7		1.0639656		NR [9372253] (imputed)	N
882	chr15	38995490	38995491	rs12899449	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	15q14	C15orf53	rs12899449-?	NR	4E-7				Affymetrix [1769948] (imputed)	N
882	chr15	38995490	38995491	rs12899449	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q14	C15orf53, RASGRP1	rs12899449-?	0.72	4E-7		1.2	[NR]	Affymetrix [1769948] (imputed)	N
882	chr15	39003762	39003763	rs2643217	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q14	NR	rs2643217-?	NR	6E-6		1.2713	[NR]	Affymetrix [722112]	N
882	chr15	39021359	39021360	rs11073348	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	15q14	NR	rs11073348-?	NR	5E-7		0.02054891	[0.013-0.029] unit increase	Illumina [7519308] (imputed)	N
882	chr15	39029417	39029418	rs2912377	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q14	RASGRP1	rs2912377-?	NR	9E-6	(glycocholate)	0.23274146	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
882	chr15	39030872	39030873	rs17597865	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	15q14	C15orf53, RP11-326N17.1	rs17597865-T	0.0517	4E-6	(EA)	0.051	[0.029-0.073] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
882	chr15	39047210	39047211	rs9920556	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	15q14	intergenic	rs9920556-T	0.129787	8E-6		0.997106	[0.57-1.43] unit increase	NR [7263501] (imputed)	N
882	chr15	39059435	39059436	rs12908794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q14		rs12908794-?	NR	2E-10				NR [~ 8900000] (imputed)	N
883	chr15	39077795	39077796	rs62007693	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	15q14	DPP4	rs62007693-?		4E-8				NR [7428630] (imputed)	N
883	chr15	39081794	39081795	rs62007727	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs62007727-A	0.684	3E-11	(Supramarginal)	17.064638	[12.03-22.1] unit increase	Affymetrix, Illumina [NR]	N
883	chr15	39085780	39085781	rs2929686	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	15q14		rs2929686-?	NR	8E-19				NR [9705931] (imputed)	N
883	chr15	39109232	39109233	rs2725797	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	15q14	NR	rs2725797-?	NR	8E-7	(EA)			Illumina [1735619]	N
883	chr15	39109232	39109233	rs2725797	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	15q14	NR	rs2725797-?	NR	7E-9				Illumina [1735619]	N
883	chr15	39110113	39110114	rs2624257	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	15q14	NR	rs2624257-A	0.35	6E-7	(left rib)	0.27	[0.17-0.37] g/cm2 decrease	Illumina [> 1100000]	N
883	chr15	39126294	39126295	rs72733110	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	15q14	NR	rs72733110-?		9E-6		0.58	[0.46-0.74]	Illumina [539473] (imputed)	N
883	chr15	39136303	39136304	rs1559831	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder	149 isolated population cases, 210 isolated population controls	NA	15q14	intergenic	rs1559831-T	0.06	4E-6		0.34	[NR] unit decrease	Illumina [223580]	N
883	chr15	39148648	39148649	rs2624265	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	15q14	intergenic	rs2624265-G	0.42	4E-7	(TG)	0.07	[0.04-0.10] mmol/l increase	Illumina [329091]	N
883	chr15	39150923	39150924	rs6496012	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder	149 isolated population cases, 210 isolated population controls	NA	15q14	intergenic	rs6496012-G	0.06	4E-6		0.34	[NR] unit decrease	Illumina [223580]	N
883	chr15	39161380	39161381	rs12442819	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	15q14	RASGRP1	rs12442819-T	0.29	8E-6		0.171	[0.097-0.245] unit decrease	Illumina [NR] (imputed)	N
883	chr15	39179284	39179285	rs11636249	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		15q14	LOC105370782	rs11636249-?	NR	5E-7	(AA)	0.153	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
884	chr15	39201170	39201171	rs76102190	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q14	NR	rs76102190-A	0.0122	4E-10	(APRT)	0.2367	NR unit decrease	Illumina [1671387] (imputed)	N
884	chr15	39215987	39215988	rs8037708	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q14	intergenic	rs8037708-A	0.6206	3E-7	(EA)	0.0018	[0.001-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
884	chr15	39221709	39221710	rs2411218	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	15q14		rs2411218-A	0.58	1E-10		0.0566	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
884	chr15	39224885	39224886	rs61501627	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	15q14	NR	rs61501627-C	NR	4E-6	(phenotype 2)	4.35	[NR]	Illumina [> 8000000] (imputed)	N
884	chr15	39225364	39225365	rs1594810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q14		rs1594810-A	NR	3E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
884	chr15	39229739	39229740	rs8026743	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	15q14	NR	rs8026743-A	0.338	1E-11		0.645	[0.46-0.83] unit increase	Affymetrix [NR] (imputed)	N
884	chr15	39231773	39231774	rs28833881	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q14	NR	rs28833881-A	0.673	4E-10		0.0024	[0.0016-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
884	chr15	39264808	39264809	rs6492848	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	15q14	NR	rs6492848-T	0.711122	2E-10		0.02608	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
884	chr15	39270289	39270290	rs11070162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q14	NR	rs11070162-T	0.406613	1E-49				Affymetrix, Illumina [24588908] (imputed)	N
884	chr15	39270327	39270328	rs11635288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q14	RP11-624L4.1	rs11635288-C	0.436077	9E-10		0.013702696	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
884	chr15	39273574	39273575	rs9920185	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q14	RASGRP1	rs9920185-C	0.649	1E-8		0.332	[0.15-0.52] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
884	chr15	39274260	39274261	rs8026431	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q14	LOC105370781	rs8026431-C	0.6364	3E-9		5.925	NR z score decrease	Illumina [26237160] (imputed)	N
884	chr15	39274751	39274752	rs2411233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q14		rs2411233-G	NR	8E-37		0.0251	[0.021-0.029] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
884	chr15	39274751	39274752	rs2411233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q14	RP11-624L4.1	rs2411233-G	0.436	2E-14		0.02833358	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr15	39275094	39275095	rs892402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	15q14		rs892402-G	0.281475	6E-12		0.0254415	[0.018-0.033] unit increase	Illumina [13478928] (imputed)	N
884	chr15	39277387	39277388	rs11070165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q14	NR	rs11070165-C	0.439774	6E-43		0.025475	[0.022-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
884	chr15	39277780	39277781	rs11856829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q14	NR	rs11856829-T	0.478071	2E-10		0.012268	[0.0085-0.0161] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
884	chr15	39278106	39278107	rs11856921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q14		rs11856921-A	NR	6E-20		0.0152	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
884	chr15	39279161	39279161	rs10681907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q14	RP11-624L4.1	rs10681907-CTTTAAA	0.427783	1E-31		0.027042253	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
884	chr15	39279161	39279161	rs10681907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q14	RP11-624L4.1	rs10681907-CTTTAAA	0.427765	5E-26		0.024337128	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
884	chr15	39285084	39285085	rs1841439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q14	NR	rs1841439-A	0.379266	6E-11		0.012845	[0.009-0.0167] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
884	chr15	39294871	39294872	rs34120329	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	15q14	RP11-624L4.1	rs34120329-C	0.4407	3E-15		0.02935467	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr15	39297865	39297866	rs12591152	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q14		rs12591152-G	0.576	2E-16				Affymetrix [10369434] (imputed)	N
884	chr15	39297871	39297872	rs12899025	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	15q14	C15orf53	rs12899025-?	NR	2E-8		0.0394	NR L decrease	Affymetrix [9390170] (imputed)	N
884	chr15	39305442	39305443	rs12913015	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q14	C15orf54	rs12913015-T	0.4148	2E-26		0.0027	[0.0021-0.0033] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
884	chr15	39305442	39305443	rs12913015	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q14	C15orf54	rs12913015-T	0.4439	2E-22		0.0028	[0.002-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
884	chr15	39305442	39305443	rs12913015	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	15q14	C15orf54	rs12913015-C	0.59	3E-6		1.039393	[1.02-1.06]	Affymetrix, Illumina [9585923] (imputed)	N
884	chr15	39307427	39307428	rs11630372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q14	RP11-624L4.1	rs11630372-G	0.440166	2E-9		0.013466735	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
884	chr15	39315357	39315358	rs12907914	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	15q14	C15orf54	rs12907914-?	NR	1E-6	(recessive)			Affymetrix [361034]	N
884	chr15	39320010	39320011	rs11070169	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels in polycystic ovary syndrome	1,882 Han Chinese ancestry individuals	NA	15q14	NR	rs11070169-T	0.33	9E-6		0.2557	NR unit increase	Affymetrix [3101376] (imputed)	N
885	chr15	39324645	39324646	rs11070170	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q14	NR	rs11070170-A	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr15	39343031	39343032	rs11070172	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs11070172-T	0.7623	7E-15	(Precentral)	23.00855	[17.21-28.81] unit decrease	Affymetrix, Illumina [NR]	N
885	chr15	39344231	39344232	rs59402905	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs59402905-?	NR	4E-8	(right precentral)			NR [9227495] (imputed)	N
885	chr15	39347045	39347046	rs78539969	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	15q14	NR	rs78539969-?	NR	2E-6		0.01453	[0.0086-0.0205] unit decrease	Affymetrix [9658292] (imputed)	N
885	chr15	39357708	39357709	rs990579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q14		rs990579-?	NR	3E-9				NR [~ 8900000] (imputed)	N
885	chr15	39380646	39380647	rs1841440	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	15q14		rs1841440-?	NR	1E-36				NR [9705931] (imputed)	N
885	chr15	39382086	39382087	rs2411247	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs2411247-?	NR	4E-10	(right precentral)			NR [9227495] (imputed)	N
885	chr15	39397760	39397761	rs1841436	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1841436-?	NR	5E-9	(right precentral)			NR [9227495] (imputed)	N
885	chr15	39449002	39449003	rs275177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q14	NR	rs275177-C	0.14944999999999997	3E-11		0.00780499	[0.0055-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
885	chr15	39449002	39449003	rs275177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q14	NR	rs275177-C	0.14974699999999996	6E-9		0.0100363	[0.0066-0.0135] unit increase	Affymetrix [16585854] (imputed)	N
885	chr15	39449002	39449003	rs275177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q14	NR	rs275177-C	0.14944999999999997	2E-6		0.00626776	[0.0036-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
886	chr15	39464166	39464167	rs7176058	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q14	RP11-265N7.2	rs7176058-A	0.7559	1E-8		0.0152	[0.0099-0.0205] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
886	chr15	39483914	39483915	rs143916815	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	15q14	C15orf54	rs143916815-G	0.9768	1E-7	(AA)			Illumina [NR] (imputed)	N
886	chr15	39519924	39519925	rs156795	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs156795-A	0.4939	8E-12	(Precentral)	17.1168	[12.21-22.02] unit increase	Affymetrix, Illumina [NR]	N
886	chr15	39543945	39543946	rs17691453	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	15q14	C15orf54	rs17691453-C		1E-6		0.1	[0.06-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
886	chr15	39553166	39553167	rs77470370	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs77470370-A	0.0485	4E-14	(Postcentral)	39.08501	[28.96-49.21] unit increase	Affymetrix, Illumina [NR]	N
886	chr15	39553166	39553167	rs77470370	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs77470370-?	NR	2E-11	(left precentral)			NR [9227495] (imputed)	N
886	chr15	39553166	39553167	rs77470370	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs77470370-?	NR	2E-10	(right precentral)			NR [9227495] (imputed)	N
886	chr15	39553621	39553621	rs11387498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs11387498-?	NR	3E-12	(right precentral)			NR [9227495] (imputed)	N
886	chr15	39553621	39553621	rs11387498	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs11387498-?	NR	2E-8	(left precentral)			NR [9227495] (imputed)	N
886	chr15	39556795	39556796	rs1505272	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q14	NR	rs1505272-?	NR	2E-12				Affymetrix [NR]	N
886	chr15	39573534	39573535	rs12595668	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	15q14	intergenic	rs12595668-G		9E-6		6.26	[NR] ms decrease	Illumina [> 930000]	N
886	chr15	39576559	39576560	rs746265	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs746265-?	NR	4E-22	(right precentral)			NR [9227495] (imputed)	N
886	chr15	39576559	39576560	rs746265	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs746265-?	NR	2E-17	(left precentral)			NR [9227495] (imputed)	N
886	chr15	39576559	39576560	rs746265	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	15q14	intergenic	rs746265-C		8E-6		6.27	[NR] ms decrease	Illumina [> 930000]	N
886	chr15	39582769	39582770	rs6492870	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs6492870-?	NR	3E-8	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39585031	39585032	rs12909502	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs12909502-?	NR	4E-16	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39593077	39593078	rs11631253	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs11631253-A	0.8841	9E-9	(Supramarginal)	21.556152	[14.2-28.91] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39595339	39595340	rs62002282	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs62002282-A	0.8836	2E-23	(Postcentral)	0.008864964	[0.0071-0.0106] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39595339	39595340	rs62002282	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs62002282-A	0.8807	2E-40	(Precentral)	50.76899	[43.28-58.25] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39595839	39595840	rs59203590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	15q14		rs59203590-A	0.1	4E-9				NR [13131314] (imputed)	N
887	chr15	39595839	39595840	rs59203590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	15q14		rs59203590-A	0.1	9E-11				Affymetrix [9061022] (imputed)	N
887	chr15	39595839	39595840	rs59203590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q14		rs59203590-A	0.1	5E-324				Affymetrix [9061022] (imputed)	N
887	chr15	39595839	39595840	rs59203590	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs59203590-?	NR	2E-8	(right supramarginal)			NR [9227495] (imputed)	N
887	chr15	39596967	39596967	rs5812091	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 47)	19,670 European ancestry individuals	NA	15q14		rs5812091-?	NR	8E-18				NR [9705931] (imputed)	N
887	chr15	39599666	39599667	rs56214701	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	15q14		rs56214701-T	0.1	6E-15				NR [13131314] (imputed)	N
887	chr15	39599666	39599667	rs56214701	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	15q14		rs56214701-T	0.1	2E-14				Affymetrix [9061022] (imputed)	N
887	chr15	39599666	39599667	rs56214701	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q14		rs56214701-T	0.1	5E-324				Affymetrix [9061022] (imputed)	N
887	chr15	39604139	39604140	rs16968739	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs16968739-?	NR	7E-30	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39604139	39604140	rs16968739	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs16968739-?	NR	5E-37	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39604339	39604340	rs3862145	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs3862145-T	0.5878	6E-13	(Precentral)	18.09534	[13.17-23.02] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39604339	39604340	rs3862145	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs3862145-T	0.5869	1E-11	(Postcentral)	14.89307	[10.57-19.22] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39617294	39617295	rs56003663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	15q14		rs56003663-C	0.11	4E-19				NR [13131314] (imputed)	N
887	chr15	39617294	39617295	rs56003663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	5,199 individuals	NA	15q14		rs56003663-C	0.11	6E-7				Affymetrix [9061022] (imputed)	N
887	chr15	39617294	39617295	rs56003663	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q14		rs56003663-C	0.11	5E-324				Affymetrix [9061022] (imputed)	N
887	chr15	39618884	39618885	rs11636013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q14	RP11-624L4.1	rs11636013-T	0.418924	5E-9		0.013456649	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
887	chr15	39618884	39618885	rs11636013	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs11636013-?	NR	1E-8	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39619660	39619661	rs8033007	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q14	NR	rs8033007-C	0.086	1E-17				NR [9056863] (imputed)	N
887	chr15	39619956	39619957	rs74007800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q14	RP11-624L4.1	rs74007800-C	0.418657	4E-9		0.013519426	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
887	chr15	39621772	39621773	rs11638016	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	15q14	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs11638016-?		6E-41				NR [7428630] (imputed)	N
887	chr15	39623846	39623847	rs10851383	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10851383-C	0.2283	5E-28	(Postcentral)	0.007452595	[0.0061-0.0088] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39623846	39623847	rs10851383	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10851383-C	0.2284	5E-20	(Postcentral)	23.736135	[18.66-28.81] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39623846	39623847	rs10851383	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs10851383-?	NR	1E-17	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39625200	39625201	rs17621729	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs17621729-?	NR	5E-19	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39625200	39625201	rs17621729	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs17621729-?	NR	1E-18	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39625617	39625618	rs11070185	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs11070185-T	0.2269	1E-10	(Pars Opercularis)	7.685358	[5.34-10.03] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39625777	39625778	rs10851385	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10851385-A	0.7705	4E-37	(Precentral)	37.44744	[31.68-43.22] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39625777	39625778	rs10851385	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10851385-A	0.7702	9E-14	(Supramarginal)	21.165398	[15.6-26.73] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39627981	39627982	rs12591944	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs12591944-?	NR	8E-11	(right supramarginal)			NR [9227495] (imputed)	N
887	chr15	39627981	39627982	rs12591944	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs12591944-?	NR	7E-49	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39628130	39628131	rs12592015	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	15q14	CDC42EP3	rs12592015-?		3E-41				NR [7428630] (imputed)	N
887	chr15	39628130	39628131	rs12592015	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	15q14	NR	rs12592015-?		4E-40				NR [7428630] (imputed)	N
887	chr15	39628674	39628675	rs72722978	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs72722978-?	NR	3E-41	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39628674	39628675	rs72722978	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs72722978-?	NR	2E-10	(left supramarginal)			NR [9227495] (imputed)	N
887	chr15	39629951	39629952	rs9652437	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs9652437-?	NR	1E-10	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39631994	39631994	rs773225188	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs773225188-?	NR	9E-10	(left postcentral)			NR [9227495] (imputed)	N
887	chr15	39631994	39631994	rs773225188	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs773225188-?	NR	3E-9	(right postcentral)			NR [9227495] (imputed)	N
887	chr15	39631994	39631994	rs773225188	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs773225188-?	NR	2E-37	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39631994	39631994	rs773225188	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs773225188-?	NR	2E-35	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39632012	39632013	rs71471500	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	THBS1	rs71471500-?		1E-27	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39632012	39632013	rs71471500	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	15q14	C15orf54	rs71471500-?		6E-41	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39632012	39632013	rs71471500	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs71471500-C	0.9103	3E-87	(Postcentral)	0.019722482	[0.018-0.022] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39632268	39632269	rs7182018	30649180	Luo Q	2019-01-16	JAMA Psychiatry	Association of a Schizophrenia-Risk Nonsynonymous Variant With Putamen Volume in Adolescents: A Voxelwise and Genome-Wide Association Study.	Voxel-wise structural brain imaging measurements	1,721 European ancestry adolescent individuals	6,932 British ancestry individuals	15q14		rs7182018-?	NR	4E-60	(left central sulcus peak voxel)			Illumina [466114]	N
887	chr15	39632268	39632269	rs7182018	30649180	Luo Q	2019-01-16	JAMA Psychiatry	Association of a Schizophrenia-Risk Nonsynonymous Variant With Putamen Volume in Adolescents: A Voxelwise and Genome-Wide Association Study.	Voxel-wise structural brain imaging measurements	1,721 European ancestry adolescent individuals	6,932 British ancestry individuals	15q14		rs7182018-?	NR	2E-70	(right central sulcus peak voxel)			Illumina [466114]	N
887	chr15	39633903	39633904	rs2033939	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	THBS1	rs2033939-?		4E-133	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39633903	39633904	rs2033939	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	C15orf54	rs2033939-?		8E-14	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39633903	39633904	rs2033939	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	C15orf54	rs2033939-?		4E-23	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39633903	39633904	rs2033939	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	15q14	C15orf54	rs2033939-?		8E-136	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39633903	39633904	rs2033939	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	15q14	C15orf54	rs2033939-?		2E-53	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39633903	39633904	rs2033939	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs2033939-A	0.0802	8E-9	(Transverse Temporal)	3.012083	[1.99-4.04] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39633903	39633904	rs2033939	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs2033939-A	0.0801	8E-23	(Pars Opercularis)	18.21615	[14.59-21.84] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39633903	39633904	rs2033939	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs2033939-?	NR	8E-11	(left supramarginal)			NR [9227495] (imputed)	N
887	chr15	39633903	39633904	rs2033939	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs2033939-?	NR	2E-81	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39633903	39633904	rs2033939	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs2033939-?	NR	2E-79	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	C15orf54	rs1080066-?		6E-125	(Precentral)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	15q14	C15orf54	rs1080066-?		2E-80	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	15q14	C15orf54	rs1080066-?		1E-200	(Precentral)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	15q14	NOSTRIN, SPC25	rs1080066-?		7E-120				NR [7428630] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	15q14	ALPK1, NEUROG2, C4orf21, LARP7	rs1080066-?		1E-242				NR [7428630] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q14	C15orf54	rs1080066-?		1E-305				NR [7428630] (imputed)	N
887	chr15	39634221	39634222	rs1080066	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs1080066-A	0.9103	3E-12	(Rostral Middle Frontal)	42.6451	[30.67-54.62] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39634221	39634222	rs1080066	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs1080066-A	0.9098	3E-184	(Precentral)	124.7257	[116.28-133.17] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39634302	39634303	rs1822105	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs1822105-T	0.5758	5E-13	(Postcentral)	0.004167167	[0.003-0.0053] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39634302	39634303	rs1822105	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs1822105-T	0.5798	1E-12	(Superior Parietal)	20.590677	[14.91-26.27] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39634302	39634303	rs1822105	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs1822105-T	0.5779	4E-31	(Precentral)	29.059032	[24.15-33.97] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39634302	39634303	rs1822105	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1822105-?	NR	8E-14	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39634302	39634303	rs1822105	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1822105-?	NR	5E-15	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39635123	39635124	rs1440802	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	15q14	RP11, 624L4.1	rs1440802-T	0.09	1E-31		11.720291	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
887	chr15	39635123	39635124	rs1440802	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1440802-?	NR	2E-10	(right postcentral)			NR [9227495] (imputed)	N
887	chr15	39636226	39636227	rs17694988	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	C15orf54	rs17694988-?		3E-11	(Rostral middle frontal)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39639170	39639171	rs11639470	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q14	NR	rs11639470-G	0.4531	1E-8		0.0266	[0.017-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
887	chr15	39639170	39639171	rs11639470	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs11639470-?	NR	7E-15	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39639170	39639171	rs11639470	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs11639470-?	NR	2E-13	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39639897	39639898	rs4924345	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	15q14	C15orf54	rs4924345-?		2E-14	(Pars opercularis)			Affymetrix, Illumina [NR] (imputed)	N
887	chr15	39639897	39639898	rs4924345	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs4924345-A	0.9181	1E-56	(Supramarginal)	69.45024	[60.86-78.04] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39639897	39639898	rs4924345	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs4924345-A	0.9181	1E-14	(Pars Triangularis)	12.818136	[9.56-16.08] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39639897	39639898	rs4924345	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs4924345-A	0.918	3E-38	(Superior Parietal)	67.905556	[57.62-78.19] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39639897	39639898	rs4924345	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs4924345-?	NR	4E-13	(right supramarginal)			NR [9227495] (imputed)	N
887	chr15	39639897	39639898	rs4924345	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	15q14	NR	rs4924345-C	0.081185	3E-53	(Imaging-derived phenotype a2009s_lh_S_central_area)	0.35321	[0.31-0.4] unit increase	NR [11734353] (imputed)	N
887	chr15	39639897	39639898	rs4924345	30305740	Elliott LT	2018-10-10	Nature	Genome-wide association studies of brain imaging phenotypes in UK Biobank.	Brain imaging measurements	8,428 British ancestry individuals	4,386 European ancestry individuals	15q14	NR	rs4924345-C	0.081185	3E-50	(Imaging-derived phenotype a2009s_rh_S_central_area)	0.34292	[0.3-0.39] unit increase	NR [11734353] (imputed)	N
887	chr15	39639991	39639992	rs4924346	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs4924346-A	0.0902	1E-80	(Postcentral)	72.0821	[64.65-79.52] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39640378	39640378	rs550614297	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs550614297-?	NR	8E-12	(left superior parietal)			NR [9227495] (imputed)	N
887	chr15	39641884	39641885	rs10520129	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10520129-A	0.579	6E-17	(Postcentral)	18.391289	[14.08-22.7] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39647277	39647278	rs35391898	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs35391898-A	0.4393	5E-12	(Supramarginal)	16.691702	[11.95-21.44] unit increase	Affymetrix, Illumina [NR]	N
887	chr15	39652449	39652450	rs72722993	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs72722993-A	0.2956	9E-15	(Postcentral)	18.568693	[13.88-23.26] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39652449	39652450	rs72722993	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs72722993-A	0.2926	9E-18	(Precentral)	23.512354	[18.15-28.88] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39654280	39654281	rs149913955	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body mass index	19,900 British ancestry individuals from 6863 families.	NA	15q14	RP11-624 L4.1	rs149913955-A	0.0059	2E-8		0.46256575	[0.3-0.62] kg/m2 decrease	Illumina [24111857] (imputed)	N
887	chr15	39655919	39655920	rs978740	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs978740-?	NR	7E-26	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39655919	39655920	rs978740	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs978740-?	NR	1E-8	(left superior parietal)			NR [9227495] (imputed)	N
887	chr15	39655919	39655920	rs978740	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs978740-?	NR	1E-23	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39661778	39661779	rs1837636	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1837636-?	NR	7E-9	(right supramarginal)			NR [9227495] (imputed)	N
887	chr15	39661778	39661779	rs1837636	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs1837636-?	NR	1E-9	(left supramarginal)			NR [9227495] (imputed)	N
887	chr15	39663999	39664000	rs34680120	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q14	NR	rs34680120-A	0.0643	1E-17				NR [9056863] (imputed)	N
887	chr15	39663999	39664000	rs34680120	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs34680120-?	NR	4E-11	(left superior parietal)			NR [9227495] (imputed)	N
887	chr15	39663999	39664000	rs34680120	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs34680120-?	NR	3E-42	(right precentral)			NR [9227495] (imputed)	N
887	chr15	39663999	39664000	rs34680120	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs34680120-?	NR	2E-43	(left precentral)			NR [9227495] (imputed)	N
887	chr15	39668869	39668870	rs28790585	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q14	NR	rs28790585-C	0.704911	2E-9		0.00584817	[0.004-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
887	chr15	39668869	39668870	rs28790585	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q14	NR	rs28790585-C	0.704911	9E-7		0.00551229	[0.0034-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
887	chr15	39671513	39671514	rs11070197	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs11070197-T	0.7536	3E-9	(Precentral)	18.614143	[12.44-24.79] unit decrease	Affymetrix, Illumina [NR]	N
887	chr15	39712285	39712286	rs148106383	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q14	NR	rs148106383-C	0.9747	3E-9		0.0928	[0.062-0.123] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
888	chr15	39720599	39720600	rs78502100	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs78502100-C	0.12	5E-15	(Supramarginal)	28.653433	[21.47-35.84] unit decrease	Affymetrix, Illumina [NR]	N
888	chr15	39742569	39742570	rs62005276	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs62005276-T	0.1631	8E-16	(Precentral)	26.942463	[20.39-33.49] unit increase	Affymetrix, Illumina [NR]	N
888	chr15	39742569	39742570	rs62005276	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q14	NR	rs62005276-?	NR	6E-9	(right precentral)			NR [9227495] (imputed)	N
888	chr15	39780485	39780486	rs78304521	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 47)	19,670 European ancestry individuals	NA	15q14		rs78304521-?	NR	7E-24				NR [9705931] (imputed)	N
888	chr15	39790175	39790176	rs10459586	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs10459586-A	0.9022	6E-8	(Pars Opercularis)	9.139815	[5.83-12.45] unit increase	Affymetrix, Illumina [NR]	N
888	chr15	39809639	39809640	rs115241741	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	15q14		rs115241741-?	NR	6E-13				NR [9705931] (imputed)	N
888	chr15	39809639	39809640	rs115241741	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs115241741-A	0.0445	6E-13	(Superior Temporal)	34.02341	[24.76-43.29] unit decrease	Affymetrix, Illumina [NR]	N
888	chr15	39820602	39820603	rs1382445	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q14	THBS1	rs1382445-G	0.892172	2E-10		0.0040727	[0.0028-0.0053] unit decrease	Affymetrix [13995440] (imputed)	N
889	chr15	39873320	39873321	rs1478604	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q14	THBS1	rs1478604-T	0.7061	4E-10		0.026249	[0.018-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
889	chr15	39880821	39880822	rs2292305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q14		rs2292305-?	NR	7E-9				NR [~ 8900000] (imputed)	N
889	chr15	39895182	39895183	rs147828834	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	15q14	FSIP1, THBS1, GPR176	rs147828834-T	0.02	5E-7		1.18	[0.73-1.63] unit increase	Illumina [7797526] (imputed)	N
889	chr15	39907869	39907870	rs9302102	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q14	FSIP1	rs9302102-?		1E-8		0.0249	[0.016-0.034] unit increase	Illumina [31500000] (imputed)	N
889	chr15	39910694	39910694	rs35927165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q14		rs35927165-TA	NR	2E-15		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
889	chr15	39916516	39916517	rs7169574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	15q14		rs7169574-C	0.334891	7E-9		0.0214871	[0.014-0.029] unit increase	Illumina [13476165] (imputed)	N
889	chr15	39932971	39932972	rs72725097	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	15q14	FSIP1	rs72725097-?	NR	5E-8		0.02441	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
889	chr15	39953060	39953061	rs8034885	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q14	NR	rs8034885-T	0.8413	2E-9	(Pericalcarine)	8.473306	[5.72-11.23] unit increase	Affymetrix, Illumina [NR]	N
889	chr15	39961359	39961360	rs6492910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q14		rs6492910-A	NR	2E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
889	chr15	39966456	39966457	rs2411306	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	15q14	NR	rs2411306-A	0.236	3E-6	(Latino)	1.4	[1.21-1.60]	Affymetrix [9737707] (imputed)	N
890	chr15	40021575	40021576	rs11070231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q14	FSIP1	rs11070231-A	0.5704	2E-17		0.0278	[0.021-0.034] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
890	chr15	40021575	40021576	rs11070231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q14	FSIP1	rs11070231-A	0.3711	9E-7	(East Asian)	0.0292	[0.018-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
890	chr15	40021575	40021576	rs11070231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q14	NR	rs11070231-A	0.4496	2E-10	(men)	0.033	[0.023-0.043] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
890	chr15	40021575	40021576	rs11070231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q14	NR	rs11070231-A	0.4297	3E-8	(women)	0.026	[0.017-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
890	chr15	40038432	40038433	rs8033957	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q14	FSIP1	rs8033957-G	0.449	2E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
891	chr15	40136927	40136928	rs11855441	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q15.1	FSIP1	rs11855441-T	0.175588250726289	3E-6		0.0032688	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
891	chr15	40169858	40169859	rs692938	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia A sp002159835 abundance in stool	5,959 Finnish ancestry individuals	NA	15q15.1		rs692938-G	0.16462	5E-8		0.0636814	[0.041-0.087] unit increase	Illumina [7980478] (imputed)	N
891	chr15	40204215	40204216	rs381732	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	15q15.1	NR	rs381732-A	NR	4E-8	(EA)	0.04	NR unit increase	Affymetrix [723305]	N
891	chr15	40204215	40204216	rs381732	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	15q15.1	NR	rs381732-A	NR	1E-6				Affymetrix [723305]	N
892	chr15	40262817	40262818	rs145208062	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EIF2AK4	rs145208062-?	NR	2E-9	(female)	1.78535	[NR] unit decrease	Affymetrix [NR] (imputed)	N
892	chr15	40284207	40284208	rs28714278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs28714278-A	0.1589	9E-19				Affymetrix, Illumina [24246363] (imputed)	N
892	chr15	40284207	40284208	rs28714278	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q15.1	EIF2AK4	rs28714278-A	0.1998	2E-9		0.02657803	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr15	40284522	40284523	rs7178419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	15q15.1		rs7178419-T	NR	4E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
892	chr15	40290475	40290476	rs8042456	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	15q15.1	NR	rs8042456-T	0.591	9E-6	(women)	0.0744006	[0.042-0.107] unit decrease	Affymetrix [up to 8900000] (imputed)	N
892	chr15	40290475	40290476	rs8042456	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	15q15.1	NR	rs8042456-T	0.591	3E-8		0.0579139	[0.038-0.078] unit decrease	Affymetrix [up to 8900000] (imputed)	N
892	chr15	40295958	40295959	rs2412459	24751813	Drago A	2014-06-01	Pharmacogenet Genomics	Genome-wide association study supports the role of the immunological system and of the neurodevelopmental processes in response to haloperidol treatment.	Response to haloperidol in psychosis	96 European ancestry cases	NA	15q15.1	EIF2AK4	rs2412459-C	0.218	9E-6	(Total PANSS scores)			Illumina [1080870] (imputed)	N
892	chr15	40299200	40299204	rs143968955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q15.1		rs143968955-T	NR	1E-16		0.0217	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
892	chr15	40299200	40299204	rs143968955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q15.1		rs143968955-T	NR	7E-16		0.0244	[0.019-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
892	chr15	40299200	40299204	rs143968955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q15.1		rs143968955-T	NR	1E-24		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
892	chr15	40299200	40299204	rs143968955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q15.1	EIF2AK4	rs143968955-T	0.186727	4E-17		0.0241905	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40299200	40299204	rs143968955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q15.1	EIF2AK4	rs143968955-T	0.186701	1E-14		0.0220284	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40299200	40299204	rs143968955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q15.1	EIF2AK4	rs143968955-T	0.186692	5E-28		0.0312372	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40300690	40300691	rs12164905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs12164905-T	0.144497	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
892	chr15	40300690	40300691	rs12164905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q15.1	NR	rs12164905-T	0.184888	4E-20		0.021967	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
892	chr15	40300690	40300691	rs12164905	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q15.1	EIF2AK4	rs12164905-T	NR	7E-16		0.0398081	[0.03-0.05] unit decrease	Affymetrix [16832071] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.207253	1E-24		0.029973445	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.207271	2E-17		0.02315594	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.207353	1E-15		0.021990504	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.207354	4E-11		0.018200638	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs12050884-C	0.789263	6E-47				Affymetrix, Illumina [22063850] (imputed)	N
892	chr15	40306333	40306334	rs12050884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q15.1	NR	rs12050884-C	0.794121	2E-50		0.034674	[0.03-0.039] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
892	chr15	40306333	40306334	rs12050884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q15.1		rs12050884-?	NR	8E-40				NR [~ 8900000] (imputed)	N
892	chr15	40306333	40306334	rs12050884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q15.1		rs12050884-?	NR	1E-23				NR [~ 8900000] (imputed)	N
892	chr15	40306333	40306334	rs12050884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.2067	1E-10		0.02857949	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr15	40306333	40306334	rs12050884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.2067	3E-16		0.03570059	[0.027-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
892	chr15	40306333	40306334	rs12050884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	15q15.1	EIF2AK4	rs12050884-A	0.2068	1E-9		0.02700095	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
892	chr15	40308858	40308859	rs35602605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs35602605-T	0.14541	4E-28				Affymetrix, Illumina [20825802] (imputed)	N
892	chr15	40308858	40308859	rs35602605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q15.1		rs35602605-?	NR	4E-34				NR [~ 8900000] (imputed)	N
892	chr15	40312366	40312366	rs34522012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q15.1	EIF2AK4	rs34522012-CA	0.560122	3E-24		0.023346929	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr15	40312614	40312615	rs55735426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q15.1	NR	rs55735426-G	0.184692	6E-21		0.022014	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
892	chr15	40312614	40312615	rs55735426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs55735426-G	0.147107	4E-12				Affymetrix, Illumina [21126107] (imputed)	N
892	chr15	40312614	40312615	rs55735426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q15.1	NR	rs55735426-G	0.185403	5E-15		0.020159	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
892	chr15	40316901	40316901	rs34431419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q15.1		rs34431419-CT	NR	2E-12		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
892	chr15	40321350	40321351	rs3736290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q15.1		rs3736290-A	NR	7E-13		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
892	chr15	40321350	40321351	rs3736290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q15.1		rs3736290-A	NR	4E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
892	chr15	40321350	40321351	rs3736290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q15.1		rs3736290-?	NR	2E-18				NR [~ 8900000] (imputed)	N
892	chr15	40321350	40321351	rs3736290	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q15.1	EIF2AK4	rs3736290-A	0.5181	6E-9		0.1926	[0.13-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
892	chr15	40322123	40322124	rs937213	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	15q15.1	EIF2AK, BMF	rs937213-C	0.421624	7E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
892	chr15	40322123	40322124	rs937213	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	15q15.1	EIF2AK, BMF	rs937213-C	0.42	5E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
892	chr15	40322123	40322124	rs937213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q15.1	EIF2AK4	rs937213-T		6E-6		0.267	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr15	40322123	40322124	rs937213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	EIF2AK4	rs937213-T		2E-10		0.256	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr15	40322123	40322124	rs937213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	EIF2AK4	rs937213-T		5E-6		0.122	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr15	40322123	40322124	rs937213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	EIF2AK4	rs937213-T		8E-8		0.131	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr15	40322123	40322124	rs937213	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	15q15.1	EIF2AK, BMF	rs937213-C	0.42	2E-7		1.1111112	[1.06-1.16]	Illumina [up to 2300000] (imputed)	N
892	chr15	40322123	40322124	rs937213	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	15q15.1	EIF2AK, BMF	rs937213-C	0.42	2E-8		1.1111112	[1.08-1.16]	Illumina [up to 2300000] (imputed)	N
892	chr15	40322551	40322552	rs2250402	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	15q15.1	EIF2AK4	rs2250402-T	NR	6E-6		0.0592	[0.033-0.085] mm increase	Illumina [1704858] (imputed)	N
892	chr15	40324480	40324481	rs4432245	24827717	Yang F	2014-05-01	Biomed Environ Sci	Genome wide association study: searching for genes underlying body mass index in the Chinese.	Body mass index	597 Han Chinese ancestry individuals	2,955 Han Chinese ancestry individuals	15q15.1	EIF2AK4	rs4432245-C	0.473	1E-6				Affymetrix [281533]	N
892	chr15	40327793	40327796	rs35056049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q15.1		rs35056049-C	NR	7E-17		0.0189	[0.014-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
892	chr15	40327793	40327796	rs35056049	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q15.1	NR	rs35056049-C	0.7133	4E-10		0.001501	[0.001-0.002] unit decrease	Affymetrix [NR] (imputed)	N
892	chr15	40328291	40328292	rs4770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q15.1	SRP14	rs4770-G	NR	2E-10		0.0190194	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
892	chr15	40328664	40328665	rs8208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q15.1	SRP14	rs8208-A	0.712746	2E-14		0.018912988	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr15	40328664	40328665	rs8208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q15.1	SRP14	rs8208-A	0.712737	7E-11		0.016163265	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr15	40330628	40330629	rs8041057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q15.1		rs8041057-T	NR	6E-20		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
892	chr15	40330628	40330629	rs8041057	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q15.1	SRP14	rs8041057-C	0.286565	1E-23		0.00425587	[0.0034-0.0051] unit increase	Affymetrix [13995440] (imputed)	N
892	chr15	40330628	40330629	rs8041057	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q15.1	SRP14	rs8041057-C	0.29	2E-17		8.48	z-score increase	Affymetrix [4314223] (imputed)	N
892	chr15	40330628	40330629	rs8041057	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q15.1	SRP14	rs8041057-C	0.29	1E-17		8.58	z-score increase	Affymetrix [4312306] (imputed)	N
892	chr15	40331698	40331699	rs72731415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q15.1	SRP14-AS1	rs72731415-G	0.338907	6E-10		0.015568687	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
892	chr15	40334575	40334576	rs2412475	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q15.1	SRP14	rs2412475-A	0.463	2E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
892	chr15	40339493	40339494	rs4924410	22327514	Postel-Vinay S	2012-02-12	Nat Genet	Common variants near TARDBP and EGR2 are associated with susceptibility to Ewing sarcoma.	Ewing sarcoma	Up to 427 European ancestry cases, up to 4,352 European ancestry controls	661 European ancestry cases, 1,299 European ancestry controls	15q15.1	BMF, SRP14, EIF2AK4	rs4924410-A	0.27	7E-9		1.46	[1.23-1.74]	NR [286966]	N
892	chr15	40347744	40347745	rs3803361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q15.1		rs3803361-T	NR	3E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
892	chr15	40357170	40357171	rs28620926	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	15q15.1	NR	rs28620926-G	0.368	8E-6	(men)	0.0579013	[0.033-0.083] unit increase	Affymetrix [up to 8900000] (imputed)	N
892	chr15	40357170	40357171	rs28620926	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	15q15.1	NR	rs28620926-G	0.368	4E-7	(women)	0.0847209	[0.052-0.117] unit increase	Affymetrix [up to 8900000] (imputed)	N
892	chr15	40357170	40357171	rs28620926	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	15q15.1	NR	rs28620926-G	0.368	2E-11		0.0694955	[0.049-0.09] unit increase	Affymetrix [up to 8900000] (imputed)	N
892	chr15	40360313	40360314	rs11638521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q15.1	NR	rs11638521-T	0.347256	3E-110		0.0639626	[0.058-0.07] unit increase	Affymetrix [16580851] (imputed)	N
892	chr15	40360740	40360741	rs7181230	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	15q15.1	BMF	rs7181230-G	0.33	5E-11		0.05	[0.03-0.07 u mol/L increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
892	chr15	40361171	40361172	rs2412478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q15.1		rs2412478-T	NR	3E-20		0.0232	[0.018-0.028] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
893	chr15	40377091	40377092	rs7183977	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q15.1	NR	rs7183977-C	0.347321	3E-57		0.021492	[0.019-0.024] unit increase	Affymetrix [16578495] (imputed)	N
893	chr15	40377091	40377092	rs7183977	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q15.1	NR	rs7183977-C	0.34704999999999997	8E-19		0.0188057	[0.015-0.023] unit increase	Affymetrix [16583148] (imputed)	N
893	chr15	40377091	40377092	rs7183977	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q15.1	NR	rs7183977-C	0.34770999999999996	8E-27		0.0285915	[0.023-0.034] unit increase	Affymetrix [16585745] (imputed)	N
893	chr15	40385226	40385227	rs1106508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q15.1	NR	rs1106508-G	NR	4E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
893	chr15	40387727	40387728	rs11637595	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q15.1	NR	rs11637595-C	0.723599	2E-18		0.0119621	[0.0092-0.0147] unit increase	Affymetrix [16585854] (imputed)	N
893	chr15	40387727	40387728	rs11637595	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q15.1	NR	rs11637595-C	0.723599	1E-8		0.00915883	[0.006-0.0123] unit increase	Affymetrix [16585866] (imputed)	N
893	chr15	40387970	40387971	rs11637681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q15.1	NR	rs11637681-A	0.722942	2E-18		0.00833271	[0.0065-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
893	chr15	40387970	40387971	rs11637681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q15.1	NR	rs11637681-A	0.722942	7E-10		0.0068442	[0.0048-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
893	chr15	40388491	40388492	rs11634257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q15.1	BMF	rs11634257-A	0.276262	9E-11		0.016160859	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
893	chr15	40388491	40388492	rs11634257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q15.1		rs11634257-?	NR	2E-16				NR [~ 8900000] (imputed)	N
893	chr15	40391964	40391965	rs35603048	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	15q15.1	BMF	rs35603048-T	NR	4E-7				Illumina [10806625] (imputed)	N
893	chr15	40397190	40397191	rs34245505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q15.1	BMF	rs34245505-G	NR	4E-11		0.0236647	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
893	chr15	40397190	40397191	rs34245505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	15q15.1	NR	rs34245505-G	NR	2E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
893	chr15	40397190	40397191	rs34245505	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q15.1	BMF	rs34245505-C	0.804729	5E-10		0.015807	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
893	chr15	40397190	40397191	rs34245505	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	BMF	rs34245505-C	0.805	2E-12		0.0212	[0.015-0.027] unit increase	Affymetrix [19819130] (imputed)	N
893	chr15	40397190	40397191	rs34245505	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	BMF	rs34245505-C	0.805	7E-13		0.0218	[0.016-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
893	chr15	40397190	40397191	rs34245505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q15.1		rs34245505-?	NR	5E-19				NR [~ 8900000] (imputed)	N
893	chr15	40397420	40397421	rs62018159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q15.1	NR	rs62018159-A	0.209149	1E-10		0.015004	[0.01-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
893	chr15	40397420	40397421	rs62018159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs62018159-?	NR	4E-12				NR [~ 8900000] (imputed)	N
893	chr15	40397935	40397936	rs539846	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	15q15.1		rs539846-T	NR	1E-10		1.3806434	NR	Affymetrix [7846216] (imputed)	N
893	chr15	40398753	40398754	rs484943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q15.1	BMF	rs484943-C	0.661538	2E-19		0.022088783	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
893	chr15	40398753	40398754	rs484943	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q15.1	NR	rs484943-C	0.6824	8E-11		0.0332	[0.023-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
893	chr15	40401122	40401122	rs5812152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q15.1	BMF	rs5812152-GC	NR	9E-9		0.017698	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
893	chr15	40401128	40401128	rs398026935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q15.1		rs398026935-GC	NR	8E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
893	chr15	40403656	40403657	rs8024033	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	15q15.1	BMF, BUB1B	rs8024033-C	NR	7E-19		1.26	[1.2-1.32]	Affymetrix, Illumina [> 10000000] (imputed)	N
893	chr15	40403656	40403657	rs8024033	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	15q15.1	BMF	rs8024033-C	0.514	3E-10		1.2195122	[1.14-1.3]	Affymetrix, Illumina [~ 8500000] (imputed)	N
893	chr15	40405908	40405909	rs34079741	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q15.1	BMF	rs34079741-G	NR	2E-8		0.0160228	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
893	chr15	40414115	40414116	rs8023845	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q15.1	BUB1B, BMF	rs8023845-G	0.78	2E-6		1.27	[NR]	Illumina [450000] (imputed)	N
893	chr15	40459980	40459980	rs35026977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q15.1		rs35026977-AT	NR	2E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
894	chr15	40524675	40524676	rs11637822	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	15q15.1		rs11637822-?	NR	9E-6		0.7833793	[0.44-1.13] unit decrease	Illumina [9842460] (imputed)	N
894	chr15	40532867	40532868	rs4924439	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q15.1	PAK6	rs4924439-A	0.051	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
894	chr15	40543103	40543104	rs1048164	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	15q15.1	NR	rs1048164-A	NR	9E-6		0.4365	NR unit increase	Illumina [4533042] (imputed)	N
894	chr15	40543222	40543223	rs1048163	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	15q15.1	PAK6, C15orf56	rs1048163-G	0.3383	5E-6		0.4495	NR unit increase	Illumina [4533042] (imputed)	N
894	chr15	40566758	40566759	rs56282503	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q15.1	NR	rs56282503-?	NR	3E-7				Illumina [up to 5582932] (imputed)	N
894	chr15	40566758	40566759	rs56282503	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q15.1	ANKRD63, PAK6, PLCB2	rs56282503-?	NR	2E-8		1.0638298	[1.04-1.09]	Illumina [8000000] (imputed)	N
894	chr15	40567236	40567237	rs56205728	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q15.1	NR	rs56205728-A	NR	9E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
894	chr15	40567236	40567237	rs56205728	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q15.1	ANKRD63, PAK6, PLCB2	rs56205728-A	0.274	4E-9		1.074	[1.048-1.099]	Affymetrix, Illumina [9005918] (imputed)	N
894	chr15	40581498	40581499	rs200787930	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q15.1	PLCB2	rs200787930-T	0.988	1E-29		33.333336		Illumina [up to 244000]	N
894	chr15	40581498	40581499	rs200787930	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q15.1	PLCB2	rs200787930-C		9E-26		100.0		Illumina [31245]	N
894	chr15	40581498	40581499	rs200787930	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	15q15.1	PLCB2	rs200787930-C	0.988	3E-7		1.8181818		Illumina [31276]	N
894	chr15	40581498	40581499	rs200787930	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	15q15.1	PLCB2	rs200787930-C	0.988	5E-8		4.347826		Illumina [31514]	N
894	chr15	40581498	40581499	rs200787930	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q15.1	PLCB2	rs200787930-C	0.088	4E-9		14.285714		Illumina [31245]	N
894	chr15	40595626	40595627	rs1869901	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	15q15.1	NR	rs1869901-?	NR	3E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [1252901] (imputed)	N
894	chr15	40597228	40597229	rs4924450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q15.1	PLCB2	rs4924450-A	0.7044	1E-10		0.015522293	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
894	chr15	40597228	40597229	rs4924450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q15.1	PLCB2	rs4924450-A	0.704381	6E-9		0.01410602	[0.0094-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
894	chr15	40597228	40597229	rs4924450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q15.1	NR	rs4924450-A	0.706498	1E-10		0.01369	[0.0095-0.0178] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
894	chr15	40597228	40597229	rs4924450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q15.1	NR	rs4924450-A	0.70545	3E-10		0.013811	[0.0095-0.0181] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
894	chr15	40610632	40610633	rs11635059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs11635059-?	NR	8E-9				NR [~ 8900000] (imputed)	N
894	chr15	40615871	40615872	rs12907887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q15.1		rs12907887-C	NR	1E-8		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
894	chr15	40615871	40615872	rs12907887	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q15.1	INAFM2	rs12907887-C	0.229	2E-20		1.08	[1.06-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
894	chr15	40616741	40616742	rs3743140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q15.1		rs3743140-A	0.265215652	1E-13		0.07687955	[0.057-0.097] unit increase	Illumina [13429769] (imputed)	N
894	chr15	40616741	40616742	rs3743140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q15.1		rs3743140-A	NR	4E-14		0.0623	[0.046-0.078] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
894	chr15	40616741	40616742	rs3743140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	15q15.1		rs3743140-A	NR	5E-8		0.0153	[0.0098-0.0208] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
894	chr15	40619723	40619724	rs67839313	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	15q15.1	INAFM2	rs67839313-C	NR	2E-10		1.06	[ 1.04 - 1.08 ]	Illumina [7521072] (imputed)	N
894	chr15	40619723	40619724	rs67839313	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	15q15.1	INAFM2	rs67839313-C	0.264	2E-8	(Japanese)	1.09	[1.06-1.12]	Illumina [7521072] (imputed)	N
895	chr15	40633137	40633138	rs4924455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q15.1		rs4924455-T	0.594046336	6E-11		0.06679338	[0.047-0.087] unit decrease	Illumina [13134967] (imputed)	N
895	chr15	40633137	40633138	rs4924455	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q15.1		rs4924455-T	0.590252018	1E-17		0.92777807	[0.912019171-0.943809248]	Illumina [8919992] (imputed)	N
895	chr15	40634716	40634717	rs4923864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	15q15.1		rs4923864-A	0.593477	5E-10		0.017502	[0.012-0.023] unit increase	Illumina [13479924] (imputed)	N
895	chr15	40634716	40634717	rs4923864	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q15.1	NR	rs4923864-G	0.6905	2E-20		0.0568	[0.045-0.069] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
895	chr15	40636417	40636418	rs746673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q15.1		rs746673-A	NR	4E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
895	chr15	40636417	40636418	rs746673	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q15.1	NR	rs746673-G	0.4084	5E-14		0.0722	[0.053-0.091] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
895	chr15	40636417	40636418	rs746673	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q15.1	INAFM2	rs746673-G	0.41	4E-14		1.07	1.05-1.10	Illumina [12557761] (imputed)	N
895	chr15	40637621	40637622	rs1898885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q15.1		rs1898885-C	NR	6E-11		0.0677	[0.047-0.088] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
895	chr15	40642876	40642877	rs16970633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	PHGR1	rs16970633-T	NR	9E-9		0.0220069	[0.014-0.03] unit increase	Affymetrix [321114] (imputed)	N
895	chr15	40644245	40644246	rs35777573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	PHGR1	rs35777573-A	NR	2E-10		0.0241463	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
895	chr15	40644245	40644246	rs35777573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	PHGR1	rs35777573-A	NR	7E-11		0.0248329	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
895	chr15	40649608	40649609	rs71472433	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q15.1	DISP2	rs71472433-C	0.165547583337189	9E-11		0.004677	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
895	chr15	40650401	40650402	rs56221586	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q15.1	NR	rs56221586-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
895	chr15	40654037	40654038	rs7165012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q15.1		rs7165012-?	NR	2E-9				NR [~ 8900000] (imputed)	N
895	chr15	40673464	40673465	rs78153629	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	15q15.1	KNSTRN	rs78153629-T	0.88	5E-6	(Left HG area)	17.44	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
895	chr15	40691051	40691052	rs62018005	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q15.1	NR	rs62018005-A	0.326018	2E-10		0.0210911	[0.015-0.028] unit decrease	NR [19129689] (imputed)	N
895	chr15	40700021	40700022	rs10518693	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q15.1	IVD	rs10518693-C	0.541136	3E-19	(isovalerylcarnitine (C5))	0.209	[0.16-0.25] unit increase	Illumina [13039987] (imputed)	N
895	chr15	40700021	40700022	rs10518693	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	15q15.1	IVD	rs10518693-T	0.396	1E-13	(SM-17 + 8 other traits)	0.092	[NR] unit increase	Affymetrix, Illumina [534665]	N
895	chr15	40703210	40703211	rs9635324	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	15q15.1	IVD	rs9635324-A	0.61	9E-43	(propionylcarnitine/isovalerylcarnitine)	0.036	[0.03-0.042] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
895	chr15	40703210	40703211	rs9635324	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q15.1	IVD	rs9635324-A	0.61	2E-35	(isovalerylcarnitine)	0.034	[0.028-0.04] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
895	chr15	40705416	40705417	rs2289328	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q15.1	NR	rs2289328-G	0.149105	7E-9		0.051023822	[0.034-0.068] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
895	chr15	40705416	40705417	rs2289328	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	15q15.1		rs2289328-?	NR	2E-8				NR [7857346] (imputed)	N
895	chr15	40705416	40705417	rs2289328	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	NR	rs2289328-?	NR	7E-8		5.392	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
895	chr15	40705416	40705417	rs2289328	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q15.1	IVD	rs2289328-A	NR	3E-12		0.027651135	[0.02-0.035] unit decrease	Affymetrix [NR]	N
895	chr15	40705416	40705417	rs2289328	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	15q15.1	IVD	rs2289328-?	NR	3E-8		5.522	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
895	chr15	40705416	40705417	rs2289328	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	15q15.1	IVD	rs2289328-?	NR	5E-7		5.024	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
895	chr15	40716252	40716253	rs2304645	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	IVD	rs2304645-C	0.5179	2E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
895	chr15	40716252	40716253	rs2304645	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	IVD	rs2304645-C	0.5179	3E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
895	chr15	40717301	40717302	rs2034650	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	15q15.1	intergenic	rs2034650-A	0.51	1E-11		1.3	[1.19-1.41]	Illumina [439828]	N
895	chr15	40718533	40718534	rs10851395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q15.1	NR	rs10851395-C	0.524015	1E-13		0.0189317	[0.014-0.024] unit increase	Affymetrix [16585745] (imputed)	N
895	chr15	40720541	40720542	rs59424629	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	15q15.1	IVD	rs59424629-T	0.539	7E-16		1.2987013	[1.22-1.41]	Affymetrix, Illumina [10790934] (imputed)	N
895	chr15	40720542	40720543	rs61661087	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q15.1	NR	rs61661087-C	0.5242	2E-24		0.0282982	[0.023-0.034] unit increase	Affymetrix [16580851] (imputed)	N
895	chr15	40721127	40721128	rs11636147	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs11636147-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
895	chr15	40721127	40721128	rs11636147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q15.1	Intergenic	rs11636147-C	0.8325	9E-10	(MTAG)	0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
895	chr15	40721127	40721128	rs11636147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q15.1	Intergenic	rs11636147-C	0.8325	6E-9		0.0222	[0.015-0.03] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
895	chr15	40722780	40722781	rs11634187	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q15.1	NR	rs11634187-T	NR	1E-8		5.712	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
895	chr15	40725032	40725033	rs34034104	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	15q15.1	Intergenic	rs34034104-C	NR	7E-6		0.0180898	[0.01-0.026] unit decrease	Illumina [13519193] (imputed)	N
895	chr15	40725032	40725033	rs34034104	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	15q15.1	Intergenic	rs34034104-C	NR	2E-6		0.020156	[0.012-0.029] unit decrease	Illumina [13520550] (imputed)	N
895	chr15	40744045	40744046	rs4924471	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q15.1	BAHD1	rs4924471-G	0.915161	2E-8		0.0192659	[0.013-0.026] unit decrease	Affymetrix [NR] (imputed)	N
895	chr15	40748717	40748718	rs9972363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q15.1	BAHD1	rs9972363-T	0.371418	2E-16		0.019242818	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr15	40751554	40751555	rs3803357	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	15q15.1	NR	rs3803357-A	NR	6E-12		0.012820774	[0.0092-0.0165] unit decrease	Illumina [242289]	N
895	chr15	40751554	40751555	rs3803357	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	15q15.1	NR	rs3803357-A	0.51	5E-7		0.015	unit decrease	Illumina [242289]	N
896	chr15	40782619	40782620	rs2444303	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	15q15.1	NR	rs2444303-?	NR	1E-6		0.0298	[0.018-0.042] unit decrease	Illumina [at least 560000] (imputed)	N
896	chr15	40795197	40795198	rs999197	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	15q15.1	NR	rs999197-T	0.11	1E-6		1.18	NR	Affymetrix, Illumina [6957974] (imputed)	N
896	chr15	40846661	40846663	rs145326897	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38dim B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q15.1		rs145326897-C	0.40813	5E-17		0.211	[0.16-0.26] unit decrease	Illumina [18238174] (imputed)	N
896	chr15	40846661	40846663	rs145326897	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q15.1		rs145326897-C	0.40813	4E-16		0.2038	[0.15-0.25] unit decrease	Illumina [18238174] (imputed)	N
896	chr15	40846661	40846663	rs145326897	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q15.1		rs145326897-C	0.40802	4E-12		0.1752	[0.13-0.22] unit decrease	Illumina [18238203] (imputed)	N
896	chr15	40856520	40856521	rs28669075	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q15.1		rs28669075-T	0.40717	2E-11		0.1665	[0.12-0.22] unit decrease	Illumina [18238289] (imputed)	N
896	chr15	40862063	40862064	rs1058734	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q15.1	BAHD1, CHST14, RPUSD2, CASC5, RAD51, RMDN3, VPS18, DLL4	rs1058734-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
896	chr15	40877321	40877322	rs7172947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q15.1		rs7172947-?	NR	5E-10				NR [~ 8900000] (imputed)	N
896	chr15	40877808	40877808	rs199799304	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q15.1		rs199799304-TG	NR	4E-6		0.94677		Affymetrix, Illumina [62056310] (imputed)	N
896	chr15	40878473	40878474	rs12437696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q15.1		rs12437696-G	0.485225	8E-21		0.020751951	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
896	chr15	40878473	40878474	rs12437696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q15.1		rs12437696-?	NR	8E-25				NR [~ 8900000] (imputed)	N
896	chr15	40878473	40878474	rs12437696	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	15q15.1	NR	rs12437696-A	0.5109	2E-9		0.0118	[0.0079-0.0157] unit increase	NR [~ 27400000] (imputed)	N
896	chr15	40878683	40878684	rs7161968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q15.1		rs7161968-T	0.153326	1E-13		0.0211074	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
896	chr15	40878683	40878684	rs7161968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q15.1		rs7161968-T	0.153314	6E-13		0.022112463	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
896	chr15	40881115	40881116	rs10400825	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	15q15.1	KNL1	rs10400825-G	0.15	3E-9				Illumina [5041948] (imputed)	N
896	chr15	40883918	40883919	rs117159862	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q15.1	NR	rs117159862-C	0.026839	2E-8		0.10840787	[0.07-0.146] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
896	chr15	40891318	40891319	rs6492956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q15.1	Intergenic	rs6492956-A	0.8387	3E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
896	chr15	40893975	40893976	rs75795656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	CASC5	rs75795656-C	NR	3E-9		0.0168281	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
896	chr15	40893975	40893976	rs75795656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	CASC5	rs75795656-C	NR	6E-9		0.0165436	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
897	chr15	40894678	40894679	rs34192317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q15.1	NR	rs34192317-C	NR	4E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
897	chr15	40898140	40898141	rs7171260	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q15.1	Intergenic	rs7171260-A	0.1562	6E-9	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
897	chr15	40908323	40908323	rs34211041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs34211041-C	0.577471	6E-9		0.022049	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
897	chr15	40908323	40908323	rs34211041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs34211041-C	0.577471	5E-9		0.0222377	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
897	chr15	40908323	40908323	rs34211041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs34211041-C	0.577471	9E-9		0.0217689	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
897	chr15	40908323	40908323	rs34211041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q15.1		rs34211041-C	0.577471	2E-8		0.021321	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
897	chr15	40908323	40908323	rs34211041	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q15.1		rs34211041-C	0.577471	2E-8		0.0214584	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
897	chr15	40922914	40922915	rs4924487	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	15q15.1	CASC5	rs4924487-C	0.81	1E-8		1.06	[1.04-1.09]	Illumina [20370935] (imputed)	N
897	chr15	40930449	40930455	rs139090700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q15.1	CASC5	rs139090700-G	0.405673	3E-13		0.01668532	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr15	40931147	40931148	rs185649211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs185649211-?	NR	2E-11				NR [~ 8900000] (imputed)	N
897	chr15	40946065	40946066	rs7164402	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	15q15.1		rs7164402-?	NR	5E-8				Affymetrix [NR] (imputed)	N
897	chr15	40949525	40949526	rs2412544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q15.1	NR	rs2412544-T	0.393588	1E-16		0.016169	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
897	chr15	40956470	40956471	rs1051482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q15.1		rs1051482-C	NR	7E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
897	chr15	40956470	40956471	rs1051482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs1051482-C	0.297057	1E-14				Affymetrix, Illumina [23472807] (imputed)	N
897	chr15	40965043	40965044	rs11561564	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	15q15.1	NR	rs11561564-G	NR	1E-12		1.065	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
897	chr15	40968858	40968859	rs552634393	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q15.1		rs552634393-C	0.0010402	6E-6		0.47189	[0.27-0.68] unit decrease	Affymetrix [15580782] (imputed)	N
897	chr15	40970723	40970724	rs8036817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q15.1	NR	rs8036817-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
897	chr15	40970723	40970724	rs8036817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	NR	rs8036817-?	NR	5E-6		4.547	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
897	chr15	40972929	40972930	rs117537166	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	15q15.1		rs117537166-G	NR	3E-6		0.58976	[0.35-0.83] unit decrease	Illumina [NR] (imputed)	N
897	chr15	40986354	40986355	rs5030789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs5030789-A	0.432674	6E-9		0.0214284	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
897	chr15	40990352	40990353	rs2928140	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q15.1	NA	rs2928140-C	0.4546	2E-10		0.0119	[0.0082-0.0156] unit increase	NR [~ 27400000] (imputed)	N
897	chr15	41000507	41000508	rs11638204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q15.1	RAD51	rs11638204-T	0.158149	6E-22		0.029618947	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
897	chr15	41024302	41024303	rs11855560	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	15q15.1	KNL1, RAD51-AS1, RAD51, RMDN3, GCHFR, DNAJC17, C15orf62, ZFYVE19	rs11855560-T	NR	7E-7		1.089	[1.053-1.126]	Illumina [8933939] (imputed)	N
898	chr15	41025875	41025876	rs200080101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q15.1	RAD51	rs200080101-A	NR	7E-9		0.0178093	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
898	chr15	41037786	41037787	rs112497439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs112497439-?	NR	1E-8				NR [~ 8900000] (imputed)	N
898	chr15	41041291	41041292	rs7175905	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs7175905-A	0.438289	7E-9		0.0212409	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
898	chr15	41048057	41048058	rs7175361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q15.1	NR	rs7175361-A	0.15815599999999996	3E-9		0.00948886	[0.0064-0.0126] unit increase	Affymetrix [16582621] (imputed)	N
898	chr15	41048057	41048058	rs7175361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q15.1	NR	rs7175361-A	0.15815599999999996	4E-7		0.00908225	[0.0058-0.0124] unit increase	Affymetrix [16582614] (imputed)	N
898	chr15	41053249	41053250	rs6492964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q15.1		rs6492964-G	0.439098	4E-8		0.0205872	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
898	chr15	41053249	41053250	rs6492964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q15.1		rs6492964-G	0.439098	3E-8		0.0208365	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
898	chr15	41053249	41053250	rs6492964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q15.1		rs6492964-G	0.439098	4E-8		0.0205508	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
898	chr15	41053249	41053250	rs6492964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q15.1		rs6492964-G	0.439098	4E-8		0.0206454	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
898	chr15	41057506	41057507	rs72735627	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q15.1	GCHFR	rs72735627-T	0.0672	4E-8		0.0362	[0.023-0.049] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
898	chr15	41136884	41136885	rs11549914	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q15.1	DNAJC17	rs11549914-T	0.008	6E-19	(DnaJ homolog subfamily C member 17, DNAJC17.14655.1.3)	1.22	[0.95-1.49] unit decrease	Affymetrix [10572788] (imputed)	N
898	chr15	41145918	41145919	rs17658212	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINT1	5,357 Icelandic ancestry individuals	NA	15q15.1		rs17658212-T	0.04508	2E-17		0.358457	[0.28-0.44] unit decrease	Illumina [7506463] (imputed)	N
898	chr15	41148162	41148163	rs690136	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	15q15.1	NR	rs690136-A	NR	2E-6		0.03327	[0.02-0.047] unit decrease	Illumina [~ 540852]	N
899	chr15	41190638	41190639	rs117900708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q15.1	VPS18	rs117900708-G	0.0604710000000001	5E-9		0.02734974	[0.018-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr15	41195445	41195446	rs4924512	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q15.1	DLL4	rs4924512-?	NR	4E-6	(phenylalanine)	0.73933786	[0.42-1.05] unit increase	Affymetrix [at least 2500000] (imputed)	N
899	chr15	41196383	41196384	rs8036080	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	15q15.1	CHAC1, RHOV, DLL4, SPINT1, VPS18	rs8036080-A	0.01	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
899	chr15	41199312	41199313	rs139224132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q15.1	RP11-540O11.1	rs139224132-C	0.020869	1E-13		0.067712784	[0.05-0.086] unit increase	Affymetrix [93095623] (imputed)	N
899	chr15	41222486	41222487	rs12441495	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q15.1	NR	rs12441495-G	0.12326	2E-9		0.057659335	[0.039-0.076] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
899	chr15	41222486	41222487	rs12441495	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	15q15.1		rs12441495-?	NR	3E-10				NR [7857346] (imputed)	N
899	chr15	41222486	41222487	rs12441495	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q15.1	NR	rs12441495-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
899	chr15	41222486	41222487	rs12441495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q15.1	Intergenic	rs12441495-C	0.1316	3E-10	(MTAG)	0.0215	[0.015-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr15	41222486	41222487	rs12441495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q15.1	Intergenic	rs12441495-C	0.1316	1E-9		0.0258	[0.018-0.034] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
899	chr15	41222486	41222487	rs12441495	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q15.1	NR	rs12441495-C	NR	2E-8		5.598	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
899	chr15	41222486	41222487	rs12441495	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	DLL4	rs12441495-C	NR	5E-9		5.836	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
899	chr15	41222486	41222487	rs12441495	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q15.1	DLL4	rs12441495-C	NR	9E-11		0.029138474	[0.02-0.038] unit decrease	Affymetrix [NR]	N
899	chr15	41233034	41233035	rs6492971	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q15.1	DLL4	rs6492971-A	NR	3E-6		1.0539628	NR	Affymetrix, Illumina [8278136] (imputed)	N
899	chr15	41245288	41245289	rs11632640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	CHAC1	rs11632640-T	NR	1E-8		0.0164144	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
899	chr15	41245288	41245289	rs11632640	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs11632640-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
899	chr15	41247858	41247859	rs112036939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q15.1		rs112036939-?	NR	7E-9				NR [~ 8900000] (imputed)	N
899	chr15	41255395	41255396	rs4924525	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	CHAC1	rs4924525-A	0.5221	3E-13		0.0171	[0.013-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
899	chr15	41255395	41255396	rs4924525	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	CHAC1	rs4924525-A	0.5221	5E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix [19819130] (imputed)	N
899	chr15	41258943	41258944	rs35395149	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q15.1	SPINT1	rs35395149-A	0.951875	2E-7	(SPINT1, 2828_82_2)	0.28387603	[0.18-0.39] unit increase	Illumina [> 1000000] (imputed)	N
899	chr15	41267490	41267494	rs66684608	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q15.1	INO80	rs66684608-G	0.4654	7E-15	(EA)	0.0027	[0.0019-0.0035] unit decrease	Affymetrix [NR] (imputed)	N
899	chr15	41271446	41271447	rs9796	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	15q15.1	INO80, RAD5	rs9796-T	0.46	1E-10		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
900	chr15	41306492	41306493	rs2925343	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q15.1	INO80	rs2925343-?	NR	5E-8		0.394	[0.25-0.54] unit decrease	Affymetrix [11100000] (imputed)	N
900	chr15	41311798	41311799	rs2925345	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q15.1	INO80	rs2925345-T	0.446	1E-17		0.0026	[0.002-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
900	chr15	41331777	41331778	rs17660713	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	15q15.1		rs17660713-?	NR	5E-10				Illumina [1128286]	N
900	chr15	41334032	41334032	rs35077430	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q15.1	INO80	rs35077430-CT	0.393	6E-15		0.479	[0.36-0.6] unit increase	Affymetrix [NR] (imputed)	N
900	chr15	41334213	41334213	rs112925537	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	INO80	rs112925537-A		2E-10		0.413	unit decrease	Affymetrix [at least 2696785] (imputed)	N
900	chr15	41334213	41334213	rs112925537	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	INO80	rs112925537-A		8E-6		0.204	unit decrease	Affymetrix [at least 2696785] (imputed)	N
900	chr15	41334213	41334213	rs112925537	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	INO80	rs112925537-A		2E-8		0.204	unit decrease	Affymetrix [at least 2696785] (imputed)	N
900	chr15	41339696	41339697	rs34153025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q15.1	NR	rs34153025-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
900	chr15	41339696	41339697	rs34153025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q15.1		rs34153025-?	NR	3E-8				NR [~ 8900000] (imputed)	N
900	chr15	41356438	41356439	rs75322822	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q15.1	NR	rs75322822-A	NR	2E-8		5.593	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
900	chr15	41356438	41356439	rs75322822	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	NR	rs75322822-?	NR	6E-7		4.996	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
900	chr15	41368201	41368202	rs144817447	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q15.1	INO80	rs144817447-T	0.9922	2E-11		0.0717	[0.051-0.092] unit increase	Affymetrix [18391927] (imputed)	N
900	chr15	41368333	41368334	rs1717200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	15q15.1		rs1717200-A	0.520139	5E-14		0.0267254	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
900	chr15	41392133	41392134	rs476633	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	15q15.1	INO80	rs476633-C	0.57	9E-9	(EA)	0.0051	[0.0033-0.0069] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
900	chr15	41399950	41399951	rs6492982	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q15.1	INO80	rs6492982-T	0.5569	3E-34		0.0033	[0.0025-0.0041] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
900	chr15	41399950	41399951	rs6492982	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q15.1	INO80	rs6492982-T	0.5512	3E-31		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
900	chr15	41399950	41399951	rs6492982	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		15q15.1	INO80	rs6492982-?	NR	2E-6				Affymetrix, Illumina [up to 10971307] (imputed)	N
900	chr15	41401549	41401550	rs2928148	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q15.1	INO80	rs2928148-A	0.522771	3E-9		0.018111	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
900	chr15	41401549	41401550	rs2928148	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	15q15.1	INO80	rs2928148-A	NR	3E-8		0.005	[0.0032-0.0068] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
900	chr15	41403596	41403597	rs28613002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q15.1	INO80	rs28613002-C	0.420607	6E-13		0.01616975	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr15	41407060	41407061	rs692155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs692155-G	0.463	5E-18				Affymetrix, Illumina [24332387] (imputed)	N
900	chr15	41407729	41407730	rs61648937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q15.1		rs61648937-T	NR	3E-10		0.0178	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
900	chr15	41412474	41412475	rs8037837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q15.1	NR	rs8037837-A	0.467474	6E-20		0.017039	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
900	chr15	41412474	41412475	rs8037837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q15.1		rs8037837-?	NR	1E-10				NR [~ 8900000] (imputed)	N
900	chr15	41418456	41418456	rs577966428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q15.1		rs577966428-CTTTT	NR	2E-27		0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
901	chr15	41427863	41427864	rs561821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q15.1		rs561821-?	NR	8E-16				NR [~ 8900000] (imputed)	N
901	chr15	41430968	41430969	rs28455998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q15.1		rs28455998-A	NR	1E-9		0.0369	[0.025-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
901	chr15	41433724	41433725	rs377237371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q15.1		rs377237371-C	NR	9E-19		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
901	chr15	41436736	41436737	rs111684993	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q15.1	intergenic	rs111684993-A	0.64	3E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
901	chr15	41437592	41437593	rs28880687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	15q15.1		rs28880687-?	NR	3E-14				NR [~ 8900000] (imputed)	N
901	chr15	41438152	41438153	rs548932774	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q15.1	intergenic	rs548932774-A	0.3472	2E-22		0.0198	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
901	chr15	41442194	41442195	rs28866311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q15.1		rs28866311-?	NR	2E-17				NR [~ 8900000] (imputed)	N
901	chr15	41443923	41443924	rs3959554	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	15q15.1	INO80, EXD1	rs3959554-A	0.5823	2E-8		0.0189	[0.012-0.026] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
901	chr15	41443923	41443924	rs3959554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs3959554-?	NR	3E-36				NR [~ 8900000] (imputed)	N
901	chr15	41446950	41446951	rs28547298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	FAM92A1P1	rs28547298-T	NR	3E-11		0.0196798	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
901	chr15	41456373	41456374	rs11852419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q15.1		rs11852419-?	NR	9E-8				NR [~ 8900000] (imputed)	N
901	chr15	41459575	41459576	rs2947489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q15.1		rs2947489-A	NR	2E-14		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
901	chr15	41460307	41460307	rs199887978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q15.1		rs199887978-GGCT	NR	9E-13		0.0138	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
901	chr15	41462467	41462468	rs12324159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q15.1		rs12324159-?	NR	8E-14				NR [~ 8900000] (imputed)	N
901	chr15	41462485	41462486	rs66663059	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs66663059-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
901	chr15	41464850	41464851	rs12900609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs12900609-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
901	chr15	41464994	41464995	rs73396340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs73396340-T	0.197815	3E-12				Affymetrix, Illumina [24653286] (imputed)	N
901	chr15	41464994	41464995	rs73396340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q15.1	NR	rs73396340-T	0.164504	8E-15		0.019414	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
901	chr15	41467286	41467287	rs8035828	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q15.1		rs8035828-A	0.44	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
901	chr15	41474005	41474006	rs8023638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs8023638-T	0.197813	2E-14				Affymetrix, Illumina [24558453] (imputed)	N
901	chr15	41485943	41485943	rs34072752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q15.1	EXD1	rs34072752-CA	0.15977	8E-12		0.020859674	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr15	41486989	41486990	rs692390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q15.1	NR	rs692390-A	NR	1E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
901	chr15	41496712	41496713	rs2412608	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q15.1	CHP1	rs2412608-C	0.5986	1E-13		7.444	NR z score decrease	Illumina [26237160] (imputed)	N
901	chr15	41496712	41496713	rs2412608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q15.1		rs2412608-?	NR	4E-9				NR [~ 8900000] (imputed)	N
901	chr15	41503729	41503730	rs8043253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q15.1	NR	rs8043253-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
901	chr15	41503729	41503730	rs8043253	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	15q15.1	CHP1, EXD1, INO80, NDUFAF1, NUSAP1, OIP5, OIP5-AS1, RTF1	rs8043253-?	NR	4E-8		1.06	[1.04-1.08]	Affymetrix [74888535] (imputed)	N
901	chr15	41509287	41509288	rs7173086	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q15.1	EXD1	rs7173086-T	0.4654	5E-13		0.2486	[0.18-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
901	chr15	41530358	41530359	rs11857726	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	15q15.1	CHP1	rs11857726-?	NR	5E-8				NR [~ 24000000] (imputed)	N
901	chr15	41531518	41531518	rs34584018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q15.1	NR	rs34584018-G	0.590229	1E-8		0.0162877	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
901	chr15	41533070	41533070	rs779665214	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	15q15.1	NR	rs779665214-?		3E-9		0.016489	[0.011-0.022] unit decrease	Affymetrix [19400418] (imputed)	N
901	chr15	41536351	41536352	rs1965139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q15.1	NR	rs1965139-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
901	chr15	41536411	41536411	rs397953818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q15.1	CHP1	rs397953818-TA	0.295166	6E-11		0.017069539	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
901	chr15	41547691	41547692	rs7162503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q15.1		rs7162503-?	NR	3E-13				NR [~ 8900000] (imputed)	N
902	chr15	41551860	41551861	rs16971721	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q15.1	NR	rs16971721-?	NR	1E-7				Affymetrix [NR]	N
902	chr15	41558840	41558841	rs77636966	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	NR	rs77636966-?	NR	3E-6		4.664	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
902	chr15	41563949	41563950	rs28374715	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	15q15.1	EXD1, OIP5, NUSAP1, RTF1, INO80, CHP1, NDUFAF1	rs28374715-?		3E-7				Illumina [9578670] (imputed)	N
902	chr15	41563949	41563950	rs28374715	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q15.1	NR	rs28374715-A	0.74	9E-8	(EA)	1.0816516		Affymetrix, Illumina [~ 9000000] (imputed)	N
902	chr15	41563949	41563950	rs28374715	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	15q15.1	ITPKA, NDUFAF1, NUSAP1	rs28374715-A	0.738	2E-8		1.082	[1.04-1.126]	Affymetrix, Illumina [1230000] (imputed)	N
902	chr15	41576711	41576712	rs80279257	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q15.1	NR	rs80279257-C	0.0208748	7E-9		0.12693083	[0.084-0.17] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
903	chr15	41693454	41693455	rs4924544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q15.1	NDUFAF1	rs4924544-T	0.5237	2E-10		0.02285449	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41697506	41697507	rs138075613	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	15q15.1	Intergenic	rs138075613-C	NR	7E-6		0.0736876	[0.042-0.106] unit decrease	Illumina [13520550] (imputed)	N
903	chr15	41725060	41725061	rs12907526	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	15q15.1	RTF1	rs12907526-G	NR	5E-7		0.0224141	[0.014-0.031] unit decrease	Illumina [13520550] (imputed)	N
903	chr15	41735709	41735710	rs2777491	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q15.1	NR	rs2777491-?	NR	8E-8	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
903	chr15	41760616	41760617	rs111371454	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	15q15.1	ITPKA, RTF1	rs111371454-G	0.2064	1E-14		1.05	[1.03-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
903	chr15	41764700	41764701	rs117643004	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q15.1	NR	rs117643004-?	NR	1E-6		4.853	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
903	chr15	41774422	41774423	rs1942	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	15q15.1	RTF1	rs1942-G	0.54	1E-12				NR [> 9500000] (imputed)	N
903	chr15	41774422	41774423	rs1942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	15q15.1	RTF1	rs1942-G	0.5252	1E-12		0.02536171	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41777531	41777532	rs75720927	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q15.1		rs75720927-C	NR	6E-6		0.95715		Affymetrix, Illumina [62056310] (imputed)	N
903	chr15	41782683	41782684	rs12440045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q15.1	ITPKA	rs12440045-C	0.528866	3E-18		0.019582272	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr15	41782683	41782684	rs12440045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q15.1	ITPKA	rs12440045-C	0.528845	8E-14		0.016877854	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr15	41782683	41782684	rs12440045	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	15q15.1	NR	rs12440045-C	0.5279	7E-14		1.0465724	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
903	chr15	41782683	41782684	rs12440045	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	15q15.1	NR	rs12440045-C	0.5279	2E-13		1.0416667	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
903	chr15	41782683	41782684	rs12440045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q15.1		rs12440045-?	NR	6E-10				NR [~ 8900000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	15q15.1		rs12440045-?	NR	1E-19				NR [~ 8900000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q15.1	ITPKA, RTF1	rs12440045-A	0.444	2E-7		0.0345	[0.022-0.047] unit decrease	NR [8041861] (imputed)	N
903	chr15	41782683	41782684	rs12440045	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	15q15.1	RTF1, ITPKA	rs12440045-C	0.55	5E-10		1.033	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
903	chr15	41782683	41782684	rs12440045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q15.1	ITPKA	rs12440045-C	0.528	2E-10		0.02314367	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q15.1	ITPKA	rs12440045-C	0.5282	4E-11		0.02406825	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	15q15.1	ITPKA	rs12440045-C	0.5282	4E-13		0.02627592	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	15q15.1	ITPKA	rs12440045-C	0.5281	3E-12		0.02537931	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41782683	41782684	rs12440045	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q15.1	ITPKA	rs12440045-C	0.5281	2E-11		0.02455572	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41782720	41782721	rs12440111	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q15.1	NR	rs12440111-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
903	chr15	41783813	41783814	rs1757463	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	15q15.1	ITPKA	rs1757463-G	0.284522	2E-10		0.042849097	[0.03-0.056] unit increase	Affymetrix [7288503] (imputed)	N
903	chr15	41787584	41787585	rs1655558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q15.1		rs1655558-G	NR	7E-11		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
903	chr15	41787584	41787585	rs1655558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q15.1	ITPKA	rs1655558-G	0.548326	2E-17		0.019034823	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
903	chr15	41787584	41787585	rs1655558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q15.1	ITPKA	rs1655558-G	0.548294	1E-10		0.014467342	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
903	chr15	41787584	41787585	rs1655558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs1655558-G	0.587125	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
903	chr15	41787584	41787585	rs1655558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q15.1	NR	rs1655558-G	0.548997	7E-14		0.015086	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
903	chr15	41787584	41787585	rs1655558	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	15q15.1	ITPKA	rs1655558-G	0.558991	1E-11		1.0425352	[1.03011441910146-1.05510564874535]	NR [9572556] (imputed)	N
903	chr15	41787584	41787585	rs1655558	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	15q15.1	ITPKA	rs1655558-T	0.4524	1E-9				Affymetrix [15688218] (imputed)	N
903	chr15	41787584	41787585	rs1655558	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	15q15.1	ITPKA	rs1655558-G	0.545	1E-6		1.05	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
903	chr15	41787584	41787585	rs1655558	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	15q15.1	ITPKA	rs1655558-?	NR	2E-18		1.068	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
903	chr15	41787584	41787585	rs1655558	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q15.1	ITPKA	rs1655558-G	NR	8E-12		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
903	chr15	41787584	41787585	rs1655558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	15q15.1		rs1655558-?	NR	3E-8				NR [~ 8900000] (imputed)	N
903	chr15	41787971	41787972	rs1655557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	15q15.1	ITPKA	rs1655557-G	0.3579	2E-13		0.02737629	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr15	41792657	41792658	rs28578550	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q15.1	NR	rs28578550-A	NR	3E-11		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
903	chr15	41795899	41795900	rs316617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q15.1	LTK	rs316617-C	0.362564	7E-15		0.01824949	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
903	chr15	41797573	41797573	rs35233496	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q15.1	LTK	rs35233496-?	NR	3E-6		0.0179601	[0.01-0.025] unit increase	Illumina [13520550] (imputed)	N
903	chr15	41798613	41798614	rs316619	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	15q15.1	NR	rs316619-C	NR	7E-6		1.0548522	[1.03-1.08]	Illumina [11933700] (imputed)	N
903	chr15	41800652	41800652	rs3837681	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	15q15.1	LTK	rs3837681-C	0.43456599	4E-8		0.00505525	[0.0032-0.0069] unit increase	Affymetrix [9463307] (imputed)	N
903	chr15	41801511	41801512	rs2289739	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q15.1	NR	rs2289739-G	0.6499	2E-14		0.0498	[0.037-0.063] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
903	chr15	41801511	41801512	rs2289739	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q15.1	NR	rs2289739-G	0.6873	4E-11		0.0364	[0.026-0.047] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
903	chr15	41806657	41806658	rs3759794	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	15q15.1	LTK	rs3759794-G	0.883	1E-8		0.01553	[0.01-0.021] unit increase	Affymetrix [11709857] (imputed)	N
903	chr15	41809204	41809205	rs11070332	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	15q15.1	RPAP1	rs11070332-A	0.347665	1E-8		0.07004768	[0.046-0.094] unit increase	Affymetrix [7288503] (imputed)	N
903	chr15	41809204	41809205	rs11070332	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q15.1	LTK	rs11070332-A	0.3578	1E-13		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
904	chr15	41815648	41815649	rs2297377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q15.1	NR	rs2297377-G	NR	1E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
904	chr15	41818916	41818917	rs1473781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	RPAP1	rs1473781-A	NR	4E-11		0.0197058	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
904	chr15	41818916	41818917	rs1473781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	RPAP1	rs1473781-A	NR	6E-11		0.0195564	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
904	chr15	41818916	41818917	rs1473781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	RPAP1	rs1473781-A	NR	4E-8		0.0165445	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
904	chr15	41818916	41818917	rs1473781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q15.1	RPAP1	rs1473781-A	NR	2E-8		0.016918	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
904	chr15	41818916	41818917	rs1473781	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs1473781-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
904	chr15	41819715	41819716	rs1200345	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1/FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	15q15.1	RPAP1	rs1200345-C	0.48785	2E-13		7.329	unit decrease	Illumina [179215]	N
904	chr15	41829229	41829230	rs721772	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	15q15.1	RPAP1	rs721772-?	NR	4E-9				NR [1800000]	N
904	chr15	41840237	41840238	rs2012453	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	15q15.1	RPAP1	rs2012453-A	0.4107	3E-7		0.0133	[0.0082-0.0184] unit increase	Affymetrix [19819130] (imputed)	N
904	chr15	41840237	41840238	rs2012453	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	RPAP1	rs2012453-A	0.4107	4E-23		0.0239	[0.019-0.029] unit increase	Affymetrix [19819130] (imputed)	N
904	chr15	41842077	41842078	rs2588323	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q15.1	TYRO3	rs2588323-G	0.67515625	2E-7	(TYRO3, 2611_72_2)	0.13714936	[0.086-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
904	chr15	41847175	41847176	rs9944249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q15.1	TCEB1P2, TYRO3	rs9944249-G	0.592932	3E-10		0.014330047	[0.0099-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr15	41847175	41847176	rs9944249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q15.1		rs9944249-?	NR	2E-11				NR [~ 8900000] (imputed)	N
904	chr15	41855735	41855736	rs1023193	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	15q15.1	TYRO3	rs1023193-T	0.305574	2E-10		0.045397	[0.031-0.059] unit decrease	Affymetrix [9463307] (imputed)	N
904	chr15	41860697	41860698	rs2289743	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q15.1	TYRO3	rs2289743-C	0.69109375	2E-9	(TYRO3, 13668_44_3)	0.16069697	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
904	chr15	41867781	41867782	rs3784283	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	15q15.1	TYRO3	rs3784283-A	NR	2E-13		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
904	chr15	41867781	41867782	rs3784283	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	15q15.1	TYRO3	rs3784283-A	0.5955	9E-14		0.0151347	[0.011-0.019] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
904	chr15	41867781	41867782	rs3784283	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	15q15.1	TYRO3	rs3784283-A	NR	4E-9		1.041019	[1.03-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
904	chr15	41875359	41875360	rs7183231	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	15q15.1	NR	rs7183231-C	NR	7E-6		1.0897	[1.05-1.13]	Illumina [11600722] (imputed)	N
904	chr15	41879639	41879640	rs28844285	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	15q15.1	TYRO3	rs28844285-T	0.595	1E-11	(EA)	0.014	[0.01-0.018] unit increase	NR [12082474] (imputed)	N
904	chr15	41887890	41887891	rs62003873	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	RP11-380D11.2	rs62003873-A	NR	1E-9		0.0179082	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
904	chr15	41887890	41887891	rs62003873	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	RP11-380D11.2	rs62003873-A	NR	1E-9		0.0178898	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
904	chr15	41887890	41887891	rs62003873	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	RP11-380D11.2	rs62003873-A	NR	9E-12		0.0202819	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
904	chr15	41887890	41887891	rs62003873	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q15.1	RP11-380D11.2	rs62003873-A	NR	2E-8		0.0168776	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
904	chr15	41888917	41888918	rs7170463	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q15.1	TYRO3	rs7170463-A	0.688571	6E-20		0.0188509	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
904	chr15	41888917	41888918	rs7170463	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q15.1	TYRO3	rs7170463-A	0.688663	3E-14		0.0161348	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
904	chr15	41888917	41888918	rs7170463	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q15.1	NR	rs7170463-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
904	chr15	41898884	41898885	rs28708888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q15.1		rs28708888-?	NR	4E-12				NR [~ 8900000] (imputed)	N
904	chr15	41906407	41906408	rs28830936	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q15.1	chr15mb41	rs28830936-A	0.346714626	4E-7		0.1465	[0.09-0.203] unit increase	Affymetrix [~ 9800000] (imputed)	N
904	chr15	41910483	41910484	rs139213873	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	15q15.1	intergenic	rs139213873-T	6.0E-4	3E-6		5.27089	NR	Affymetrix, Illumina [30341632] (imputed)	N
904	chr15	41927329	41927330	rs28526689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q15.1		rs28526689-A	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
904	chr15	41941110	41941111	rs4244585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q15.1		rs4244585-A	NR	2E-11		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
905	chr15	41953210	41953211	rs56383987	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q15.1	MGA	rs56383987-T	0.0549	7E-12		0.0364	[0.026-0.047] unit decrease	Affymetrix [19819130] (imputed)	N
905	chr15	41965590	41965591	rs2009310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q15.1	NR	rs2009310-T	0.496397	1E-12		0.00826317	[0.0058-0.0107] unit increase	Affymetrix [16585854] (imputed)	N
905	chr15	41965590	41965591	rs2009310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q15.1	NR	rs2009310-T	0.496397	1E-5		0.00612393	[0.0033-0.0089] unit increase	Affymetrix [16585866] (imputed)	N
905	chr15	41966730	41966731	rs7164533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	MGA	rs7164533-T	NR	5E-10		0.0177473	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
905	chr15	41973598	41973598	rs11405385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q15.1		rs11405385-GT	NR	3E-13		0.0184	[0.013-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
905	chr15	41974659	41974660	rs4924570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	15q15.1		rs4924570-?	NR	1E-7				NR [~ 8900000] (imputed)	N
905	chr15	41977689	41977690	rs72724130	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q15.1	MGA	rs72724130-T	0.057	1E-9		0.056	[0.038-0.074] unit decrease	Affymetrix [27624732] (imputed)	N
905	chr15	41989090	41989091	rs61736074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q15.1	MGA	rs61736074-A	0.021134	4E-9		0.046067175	[0.031-0.061] unit increase	Affymetrix [93095623] (imputed)	N
905	chr15	41989925	41989926	rs16971976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs16971976-?	NR	1E-24				NR [~ 8900000] (imputed)	N
905	chr15	42014318	42014319	rs202172222	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	15q15.1	NR	rs202172222-CA		3E-6		0.2031	[0.12-0.29] unit decrease	Illumina [12770451] (imputed)	N
905	chr15	42030848	42030849	rs117618307	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	15q15.1	MGA	rs117618307-A	0.0202396	1E-8		5.68	z score decrease	NR [10847151] (imputed)	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	15q15.1	MGA	rs17677991-G	0.3442	2E-6		0.0149	[0.0088-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	15q15.1	MGA	rs17677991-G	0.3522	4E-7		0.0165	[0.01-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	15q15.1	MGA	rs17677991-G	0.3475	4E-6		0.0144	[0.0083-0.0205] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	15q15.1	MGA	rs17677991-G	0.3569	6E-7		0.0169	[0.01-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	15q15.1	MGA	rs17677991-G	0.3454	3E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42032382	42032383	rs17677991	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	15q15.1	MGA	rs17677991-G	0.3541	8E-13		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
905	chr15	42037569	42037570	rs2577947	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q15.1	NA	rs2577947-T	0.8243	7E-10		0.0135	[0.0092-0.0178] unit decrease	NR [~ 27400000] (imputed)	N
905	chr15	42071561	42071562	rs111707068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs111707068-T	NR	2E-9		0.0222831	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
905	chr15	42071561	42071562	rs111707068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs111707068-T	NR	2E-9		0.0221555	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
905	chr15	42072529	42072530	rs1105881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs1105881-G	NR	5E-11		0.0193749	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
905	chr15	42072529	42072530	rs1105881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs1105881-G	NR	7E-9		0.0171663	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
905	chr15	42072529	42072530	rs1105881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q15.1		rs1105881-?	NR	7E-12				NR [~ 8900000] (imputed)	N
905	chr15	42072529	42072530	rs1105881	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q15.1	NR	rs1105881-G	0.37	3E-15		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
905	chr15	42072529	42072530	rs1105881	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q15.1	NR	rs1105881-G	0.37	5E-8				Affymetrix [2446094] (imputed)	N
905	chr15	42072529	42072530	rs1105881	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	15q15.1	intergenic	rs1105881-C	0.643	7E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
905	chr15	42073396	42073397	rs2695165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q15.1		rs2695165-?	NR	2E-7				NR [~ 8900000] (imputed)	N
906	chr15	42077960	42077961	rs8035855	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	15q15.1	MAPKBP1	rs8035855-A	0.644	2E-12		0.01227	[0.0089-0.0157] unit increase	Affymetrix [11709857] (imputed)	N
906	chr15	42086339	42086340	rs4923910	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.1	MAPKBP1	rs4923910-G		4E-13		0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
906	chr15	42091211	42091212	rs2925339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs2925339-A	0.326976	2E-8		0.0215601	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
906	chr15	42091211	42091212	rs2925339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs2925339-A	0.326976	3E-8		0.0212858	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
906	chr15	42091211	42091212	rs2925339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q15.1		rs2925339-A	0.326976	2E-8		0.0216992	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
906	chr15	42091211	42091212	rs2925339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs2925339-A	0.326976	3E-9		0.0230732	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
906	chr15	42091211	42091212	rs2925339	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs2925339-A	0.326976	5E-9		0.0227192	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
906	chr15	42091211	42091212	rs2925339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs2925339-A	NR	7E-13		0.0216259	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42091211	42091212	rs2925339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs2925339-A	NR	1E-12		0.0214023	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42091211	42091212	rs2925339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs2925339-A	NR	5E-11		0.0199423	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
906	chr15	42091211	42091212	rs2925339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs2925339-A	NR	2E-8		0.0171028	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
906	chr15	42091211	42091212	rs2925339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs2925339-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
906	chr15	42092325	42092326	rs62002090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs62002090-T	NR	5E-10		0.0188597	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
906	chr15	42096145	42096146	rs11855017	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q15.1	MAPKBP1	rs11855017-A	0.1817	9E-14		0.0184	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
906	chr15	42096145	42096146	rs11855017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q15.1	NR	rs11855017-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
906	chr15	42096145	42096146	rs11855017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q15.1		rs11855017-?	NR	6E-10				NR [~ 8900000] (imputed)	N
906	chr15	42096145	42096146	rs11855017	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q15.1	NR	rs11855017-?	NR	8E-8		0.15353	[0.097-0.21] unit increase	Affymetrix [7794483] (imputed)	N
906	chr15	42100673	42100674	rs7175346	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	15q15.1	NR	rs7175346-A	0.524	4E-11		0.0117	[0.0082-0.0152] unit increase	NR [~ 27400000] (imputed)	N
906	chr15	42100724	42100725	rs28671571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs28671571-C	NR	1E-10		0.0181699	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42102284	42102285	rs12440605	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs12440605-G	NR	6E-11		0.0185009	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42102284	42102285	rs12440605	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q15.1	NA	rs12440605-A	0.5243	4E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
906	chr15	42111297	42111298	rs890498	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q15.1	NR	rs890498-C	0.6554	3E-15		0.0151	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
906	chr15	42115746	42115747	rs3959569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	MAPKBP1	rs3959569-C	NR	8E-11		0.0195306	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
906	chr15	42115746	42115747	rs3959569	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	15q15.1	MAPKBP1	rs3959569-C	0.348	8E-6		0.0187	[0.01-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42115746	42115747	rs3959569	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	15q15.1	MAPKBP1	rs3959569-C	0.3148	1E-6		0.0141	[0.0084-0.0198] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42115746	42115747	rs3959569	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	15q15.1	MAPKBP1	rs3959569-C	0.3489	2E-8		0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42119602	42119603	rs4923914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q15.1	NR	rs4923914-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
906	chr15	42120436	42120437	rs13380315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	PLA2G4B, JMJD7, JMJD7-PLA2G4B	rs13380315-C	NR	1E-9		0.0171535	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
906	chr15	42120436	42120437	rs13380315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	PLA2G4B, JMJD7, JMJD7-PLA2G4B	rs13380315-C	NR	1E-9		0.0171239	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
906	chr15	42120436	42120437	rs13380315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q15.1	PLA2G4B, JMJD7, JMJD7-PLA2G4B	rs13380315-C	NR	3E-9		0.0169296	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
906	chr15	42123131	42123132	rs11637616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	PLA2G4B, JMJD7, JMJD7-PLA2G4B	rs11637616-C	NR	2E-8		0.0203152	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
906	chr15	42123131	42123132	rs11637616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	PLA2G4B, JMJD7, JMJD7-PLA2G4B	rs11637616-C	NR	1E-8		0.0204592	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
906	chr15	42125233	42125234	rs1531140	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.1	NR	rs1531140-C	NR	2E-8		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
906	chr15	42142911	42142912	rs8025614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q15.1		rs8025614-?	NR	2E-32				NR [~ 8900000] (imputed)	N
906	chr15	42155700	42155701	rs8028958	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	15q15.1	NR	rs8028958-?	NR	8E-8		2.5	[NR]	Illumina [5326313] (imputed)	N
906	chr15	42159069	42159070	rs139566208	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q15.1	NR	rs139566208-T	0.0	4E-6		1.0416667	[-0.99673-3.08007]	Affymetrix [at least 143006] (imputed)	N
906	chr15	42162702	42162703	rs137894188	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q15.1	NR	rs137894188-C	1.0	2E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
906	chr15	42162956	42162957	rs890509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	SPTBN5	rs890509-T	NR	2E-8		0.0165882	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42162956	42162957	rs890509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	SPTBN5	rs890509-T	NR	4E-8		0.0163828	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42162956	42162957	rs890509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q15.1	SPTBN5	rs890509-T	NR	1E-8		0.0170244	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
906	chr15	42166499	42166500	rs12593397	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	15q15.1	SPTBN5	rs12593397-T	0.4316	3E-6		0.0144	[0.0083-0.0205] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42166499	42166500	rs12593397	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	15q15.1	SPTBN5	rs12593397-T	0.4336	4E-6		0.01	[0.0057-0.0143] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42166499	42166500	rs12593397	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	15q15.1	SPTBN5	rs12593397-T	0.4419	2E-6		0.0109	[0.0064-0.0154] unit increase	Affymetrix, Illumina [at least 228985]	N
906	chr15	42170505	42170506	rs747780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q15.1		rs747780-?	NR	3E-8				NR [~ 8900000] (imputed)	N
906	chr15	42179609	42179610	rs141541070	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q15.1	NR	rs141541070-C	1.0	3E-6		1.02	[-1.038-3.078]	Affymetrix [at least 143006] (imputed)	N
906	chr15	42180404	42180405	rs11638188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q15.1	SPTBN5	rs11638188-A	NR	6E-9		0.0191398	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42180404	42180405	rs11638188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q15.1	SPTBN5	rs11638188-A	NR	1E-8		0.0187545	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
906	chr15	42182441	42182442	rs12905012	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	15q15.1	SPTBN5	rs12905012-T	0.7358	6E-6		0.0354	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
906	chr15	42183493	42183494	rs149437164	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q15.1	NR	rs149437164-A	0.0	2E-6		1.0526316	[-1.02497-3.13023]	Affymetrix [at least 143006] (imputed)	N
906	chr15	42189903	42189904	rs117990941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.1		rs117990941-?	NR	5E-12				NR [~ 8900000] (imputed)	N
906	chr15	42190691	42190692	rs3088159	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	15q15.1	NR	rs3088159-?	NR	1E-6	(NFThind)	0.213	[NR] unit decrease	Illumina [NR] (imputed)	N
906	chr15	42190691	42190692	rs3088159	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	15q15.1	NR	rs3088159-?	NR	1E-6	(NFT)	0.221	[NR] unit decrease	Illumina [NR] (imputed)	N
906	chr15	42200894	42200895	rs34180124	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	15q15.1	EHD4	rs34180124-A	0.044	2E-7	(Proton pump inhibitors [A02BC])	2.03		Illumina [16500000] (imputed)	N
906	chr15	42201409	42201410	rs543786825	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q15.1	LTK	rs543786825-T	4.0E-4	5E-6		3.15	[1.93-5.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
907	chr15	42208040	42208041	rs4923919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs4923919-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
907	chr15	42226254	42226255	rs4286082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q15.1	EHD4	rs4286082-T	0.712366	7E-15		0.019595321	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42226254	42226255	rs4286082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q15.1	EHD4	rs4286082-C	0.287562	6E-23		0.024897877	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42229040	42229041	rs16972296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q15.1		rs16972296-T	NR	1E-37		0.039	[0.033-0.045] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
907	chr15	42229040	42229041	rs16972296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs16972296-T	0.115502	1E-52				Affymetrix, Illumina [24649327] (imputed)	N
907	chr15	42229851	42229852	rs10518743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	15q15.1		rs10518743-T	0.127696	8E-12		0.0449759	[0.032-0.058] unit decrease	Illumina [13471440] (imputed)	N
907	chr15	42229851	42229852	rs10518743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	15q15.1	NR	rs10518743-C	0.871798	5E-11		0.046945	[0.033-0.061] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
907	chr15	42231352	42231353	rs12101888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	15q15.1	EHD4	rs12101888-T	0.2441	4E-16		0.033985	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42231352	42231353	rs12101888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q15.1	EHD4	rs12101888-T	0.2441	1E-17		0.03573294	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42231352	42231353	rs12101888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q15.1	EHD4	rs12101888-T	0.2441	4E-17		0.03508634	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42231352	42231353	rs12101888	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	15q15.1	EHD4	rs12101888-T	0.2441	2E-19		0.03781998	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42233672	42233673	rs4924590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q15.1	EHD4	rs4924590-A	0.244248	5E-17		0.02164312	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42233672	42233673	rs4924590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q15.1	EHD4	rs4924590-A	0.244282	9E-19		0.023316476	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42233672	42233673	rs4924590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q15.1	EHD4	rs4924590-A	0.244236	3E-24		0.026829943	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42233672	42233673	rs4924590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q15.1	EHD4	rs4924590-A	0.2444	3E-17		0.03532786	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42233672	42233673	rs4924590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	15q15.1	EHD4	rs4924590-A	0.2444	7E-12		0.02847509	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42233672	42233673	rs4924590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	15q15.1	EHD4	rs4924590-A	0.2444	8E-18		0.03594739	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42235031	42235032	rs17739167	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	15q15.1		rs17739167-A	0.712	2E-16				Affymetrix [10369434] (imputed)	N
907	chr15	42235031	42235032	rs17739167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q15.1	EHD4	rs17739167-G	0.2839	1E-16		0.03312018	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42235172	42235173	rs11631075	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q15.1	EHD4	rs11631075-G	0.440745	8E-11		0.0121872	[0.0085-0.0159] unit increase	NR [13737936] (imputed)	N
907	chr15	42235172	42235173	rs11631075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q15.1		rs11631075-?	NR	8E-13				NR [~ 8900000] (imputed)	N
907	chr15	42235315	42235316	rs11549015	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q15.1	NR	rs11549015-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
907	chr15	42237402	42237403	rs1648855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q15.1	EHD4	rs1648855-G	0.716344	4E-12		0.017400902	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42237402	42237403	rs1648855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q15.1	EHD4	rs1648855-G	0.716352	4E-9		0.014733446	[0.0098-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42237402	42237403	rs1648855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q15.1	EHD4	rs1648855-G	0.716297	7E-14		0.018658448	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42237402	42237403	rs1648855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q15.1	EHD4	rs1648855-G	0.716312	2E-11		0.016743412	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
907	chr15	42237990	42237991	rs16972308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q15.1		rs16972308-A	NR	2E-16		0.0241	[0.018-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
907	chr15	42237990	42237991	rs16972308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q15.1	EHD4	rs16972308-A	0.107093	8E-12		0.025142208	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42237990	42237991	rs16972308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	15q15.1	NR	rs16972308-G	0.85791	2E-12		0.037563	[0.027-0.048] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
907	chr15	42239404	42239405	rs1614170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q15.1		rs1614170-?	NR	3E-8				NR [~ 8900000] (imputed)	N
907	chr15	42239778	42239779	rs8035074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q15.1		rs8035074-?	NR	7E-8				NR [~ 8900000] (imputed)	N
907	chr15	42242887	42242888	rs57556178	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	15q15.1	EHD4	rs57556178-?	NR	4E-8		0.04488	[0.029-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
907	chr15	42248515	42248518	rs147477118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q15.1		rs147477118-C	NR	1E-52		0.0479	[0.042-0.054] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
907	chr15	42248515	42248518	rs147477118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q15.1	EHD4	rs147477118-C	0.119561	8E-28		0.03883769	[0.032-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42248515	42248518	rs147477118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q15.1	EHD4	rs147477118-C	0.119431	1E-11		0.023865493	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42248515	42248518	rs147477118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q15.1	EHD4	rs147477118-C	0.119582	1E-12		0.024657995	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42248515	42248518	rs147477118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q15.1	EHD4	rs147477118-C	0.119567	2E-40		0.04721891	[0.04-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42248825	42248826	rs72726027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q15.1	NR	rs72726027-C	0.111895	4E-48		0.04262	[0.037-0.048] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
907	chr15	42248825	42248826	rs72726027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q15.1	NR	rs72726027-C	0.11173	2E-45		0.043218	[0.037-0.049] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
907	chr15	42248825	42248826	rs72726027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q15.1		rs72726027-?	NR	3E-44				NR [~ 8900000] (imputed)	N
907	chr15	42261464	42261465	rs2250635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q15.1	EHD4	rs2250635-C	0.1117	1E-16		0.04748152	[0.036-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42261464	42261465	rs2250635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q15.1	EHD4	rs2250635-C	0.1117	2E-15		0.0453847	[0.034-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42261464	42261465	rs2250635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q15.1	EHD4	rs2250635-C	0.1117	8E-16		0.0459773	[0.035-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42261464	42261465	rs2250635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	15q15.1	EHD4	rs2250635-C	0.1117	3E-19		0.0514926	[0.04-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42261464	42261465	rs2250635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	15q15.1	EHD4	rs2250635-C	0.1117	2E-16		0.04691554	[0.036-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42261742	42261742	rs578067251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q15.1	EHD4	rs578067251-CAA	0.111439	3E-25		0.037593022	[0.03-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr15	42261780	42261781	rs1002774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q15.1	NR	rs1002774-A	0.111651	4E-73		0.053992	[0.048-0.06] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
907	chr15	42263978	42263979	rs72726037	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q15.1		rs72726037-G	0.889	3E-29				Affymetrix [10369434] (imputed)	N
907	chr15	42263978	42263979	rs72726037	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs72726037-A	0.117294	1E-81				Affymetrix, Illumina [23467995] (imputed)	N
907	chr15	42264430	42264431	rs1704413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q15.1	EHD4	rs1704413-G	0.1124	6E-9		0.03430164	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42265235	42265236	rs2412653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs2412653-G	0.121789	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
907	chr15	42265235	42265236	rs2412653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q15.1	NR	rs2412653-G	0.116169	9E-14		0.022593	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
907	chr15	42265318	42265319	rs72726038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q15.1		rs72726038-T	NR	3E-41		0.0445	[0.038-0.051] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
907	chr15	42266261	42266262	rs59868192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	15q15.1	CTD-2382E5.1	rs59868192-A	0.1159	7E-18		0.04913784	[0.038-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr15	42269454	42269455	rs57950483	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	15q15.1		rs57950483-A	0.884	1E-24				Affymetrix [10369434] (imputed)	N
907	chr15	42270273	42270274	rs72726051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs72726051-T	0.117949	4E-49				Affymetrix, Illumina [23114412] (imputed)	N
907	chr15	42332615	42332616	rs7172971	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	15q15.1	NR	rs7172971-?	NR	1E-8	(Japanese)	0.8034	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
908	chr15	42403883	42403884	rs111331381	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	15q15.1		rs111331381-C	0.01574	4E-14		0.58532	[0.43-0.74] unit decrease	Illumina [7506463] (imputed)	N
908	chr15	42434836	42434837	rs1356410	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q15.1	NR	rs1356410-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
908	chr15	42434836	42434837	rs1356410	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	15q15.1	NR	rs1356410-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
909	chr15	42503677	42503678	rs77215191	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q15.1		rs77215191-C	0.977	4E-10				Affymetrix [10369434] (imputed)	N
909	chr15	42505175	42505176	rs1703755	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		15q15.1	TMEM87A	rs1703755-?	NR	2E-9		0.0088	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
909	chr15	42586772	42586773	rs866905202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q15.1	GANC	rs866905202-C	0.13582	1E-13		0.024558721	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
909	chr15	42586772	42586773	rs866905202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q15.1	GANC	rs866905202-C	0.135813	2E-12		0.023463761	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
909	chr15	42586772	42586772	rs34588821	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q15.1	NR	rs34588821-D	0.13546	6E-13		0.022796	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
910	chr15	42618530	42618531	rs2578652	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.1	GANC	rs2578652-A		8E-9		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
910	chr15	42651899	42651900	rs149698681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q15.1	CAPN3	rs149698681-C	0.020514	1E-38		0.10309579	[0.088-0.119] unit increase	Affymetrix [93095623] (imputed)	N
910	chr15	42651899	42651900	rs149698681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q15.1	CAPN3	rs149698681-C	0.0219	8E-13		0.08823505	[0.064-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
910	chr15	42651899	42651900	rs149698681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q15.1	CAPN3	rs149698681-C	0.0219	7E-10		0.07615394	[0.052-0.1] unit increase	Affymetrix [~ 2500000] (imputed)	N
910	chr15	42651899	42651900	rs149698681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q15.1	CAPN3	rs149698681-C	0.0219	2E-10		0.07836878	[0.054-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
910	chr15	42653460	42653461	rs8026198	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		15q15.1	CAPN3	rs8026198-?	NR	6E-10		0.009	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
910	chr15	42671307	42671308	rs56702977	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	15q15.1	CAPN3	rs56702977-A	0.13	2E-9		0.008	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
910	chr15	42677738	42677739	rs79429038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs79429038-A	0.125458	1E-10				Affymetrix, Illumina [19905671] (imputed)	N
910	chr15	42679422	42679423	rs28364406	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	15q15.1		rs28364406-C	0.981869	2E-8		0.0831501	[0.054-0.112] unit decrease	NR [11722792] (imputed)	N
910	chr15	42679422	42679423	rs28364406	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364406-C	0.98186	4E-9		0.0913691	[0.061-0.122] unit increase	NR [11722792] (imputed)	N
910	chr15	42679422	42679423	rs28364406	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	15q15.1		rs28364406-C	0.981862	1E-11		0.103384	[0.073-0.133] unit increase	NR [11722792] (imputed)	N
910	chr15	42679422	42679423	rs28364406	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364406-C	0.98186	7E-10		0.0933662	[0.064-0.123] unit increase	NR [11722792] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.1	CAPN3	rs28364406-T	NR	5E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.1	CAPN3	rs28364406-T	NR	2E-12				Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.1	CAPN3	rs28364406-T	NR	9E-11				Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.1	CAPN3	rs28364406-T	NR	2E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	3E-12	(EA)	0.07	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	2E-12		0.065	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	3E-8	(EA)	0.081	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	1E-7		0.065	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.1	CAPN3	rs28364406-T	NR	7E-11				Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.1	CAPN3	rs28364406-T	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.1	CAPN3	rs28364406-T	NR	3E-11				Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.1	CAPN3	rs28364406-T	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	4E-7	(EA)	0.022	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	2E-8		0.023	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42679422	42679423	rs28364406	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.1	CAPN3	rs28364406-T	NR	6E-6		0.02289	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
910	chr15	42683786	42683787	rs2412710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q15.1		rs2412710-G	0.981971	2E-9		0.0893249	[0.06-0.119] unit increase	NR [11722792] (imputed)	N
910	chr15	42683786	42683787	rs2412710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q15.1		rs2412710-G	0.981971	3E-9		0.0886124	[0.059-0.118] unit decrease	NR [11722792] (imputed)	N
910	chr15	42683786	42683787	rs2412710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.1		rs2412710-G	0.981978	8E-11		0.100247	[0.07-0.13] unit increase	NR [11722792] (imputed)	N
910	chr15	42683786	42683787	rs2412710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.1		rs2412710-G	0.981978	1E-8		0.0859863	[0.056-0.116] unit increase	NR [11722792] (imputed)	N
910	chr15	42683786	42683787	rs2412710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.1		rs2412710-G	0.981978	3E-9		0.0905064	[0.061-0.12] unit increase	NR [11722792] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	4E-23		0.0869	[0.07-0.104] unit increase	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	5E-14		0.0693	[0.051-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	8E-12		0.0626	[0.045-0.081] unit increase	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	6E-25		0.0944	[0.076-0.112] unit increase	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	1E-27		0.0957	[0.078-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-A	NR	3E-13		0.0666	[0.049-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
910	chr15	42683786	42683787	rs2412710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-G	NR	2E-13		0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
910	chr15	42683786	42683787	rs2412710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-G	0.979	4E-9	(EA)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
910	chr15	42683786	42683787	rs2412710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-G	0.969	5E-6	(Hispanic)	0.181	unit decrease	Affymetrix [at least 7091467] (imputed)	N
910	chr15	42683786	42683787	rs2412710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.1	NR	rs2412710-G	NR	7E-6		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
910	chr15	42683786	42683787	rs2412710	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q15.1	CAPN3	rs2412710-A	0.04	2E-11		0.099	[NR] mg/dL increase	NR [NR] (imputed)	N
910	chr15	42683786	42683787	rs2412710	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q15.1	CAPN3	rs2412710-A	0.02	2E-8		7.0	[4.08-9.92] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
910	chr15	42690900	42690901	rs111657448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q15.1	RP11-164J13.1, CAPN3	rs111657448-A	0.02073	7E-36		0.09921983	[0.084-0.115] unit increase	Affymetrix [93095623] (imputed)	N
910	chr15	42692392	42692393	rs28364475	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	15q15.1	NR	rs28364475-?	NR	8E-13				Affymetrix, Illumina [6210740] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	8E-18		0.127306	[0.098-0.156] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982015	2E-9		0.0881986	[0.059-0.117] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-11		0.0998478	[0.07-0.129] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-14		0.113685	[0.084-0.143] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-11		0.0999131	[0.071-0.129] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	7E-10		0.0908844	[0.062-0.12] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-9		0.0881096	[0.059-0.117] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-15		0.120404	[0.091-0.15] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-8		0.0857637	[0.056-0.115] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	9E-15		0.116985	[0.087-0.147] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-11		0.102995	[0.073-0.133] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-12		0.106365	[0.077-0.136] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	8E-9		0.0877275	[0.058-0.117] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	7E-13		0.109522	[0.08-0.139] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	6E-9		0.0889553	[0.059-0.119] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	3E-12		0.106833	[0.077-0.137] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-9		0.0883317	[0.059-0.118] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-12		0.108591	[0.079-0.139] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-13		0.110561	[0.081-0.14] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	3E-9		0.0906683	[0.061-0.121] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	5E-10		0.0941004	[0.065-0.124] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-8		0.0846641	[0.054-0.115] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982012	9E-10		0.0889164	[0.06-0.117] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982012	2E-10		0.0950916	[0.066-0.125] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982012	4E-9		0.0885926	[0.059-0.118] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	3E-13		0.108439	[0.079-0.138] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-8		0.0848788	[0.056-0.114] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-8		0.0858927	[0.056-0.115] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-8		0.084802	[0.055-0.114] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982012	5E-8		0.0841074	[0.054-0.114] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-13		0.109305	[0.08-0.138] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-12		0.104837	[0.075-0.134] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-8		0.0840899	[0.055-0.113] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-14		0.114184	[0.085-0.143] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	5E-21		0.139858	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-9		0.0887697	[0.059-0.118] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-8		0.083838	[0.054-0.113] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-8		0.0880737	[0.058-0.118] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-8		0.0830952	[0.054-0.113] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	3E-8		0.083013	[0.054-0.112] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	3E-11		0.0974643	[0.069-0.126] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-9		0.0918813	[0.062-0.121] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	4E-9		0.0874316	[0.058-0.117] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-10		0.0948849	[0.066-0.124] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-9		0.0906085	[0.061-0.12] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	2E-9		0.0879468	[0.059-0.117] unit increase	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.1		rs28364531-C	0.982019	1E-8		0.0859907	[0.056-0.116] unit decrease	NR [11722792] (imputed)	N
910	chr15	42701373	42701374	rs28364531	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q15.1	CAPN3	rs28364531-C	0.98196	2E-31		0.0877508	[0.073-0.103] unit decrease	Affymetrix [NR] (imputed)	N
910	chr15	42706286	42706287	rs28364559	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	15q15.1	NR	rs28364559-T	0.8228	1E-18		1.0803	[0.84-1.32] unit increase	Affymetrix, Illumina [12989440] (imputed)	N
910	chr15	42710218	42710219	rs61071861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q15.1		rs61071861-?	NR	7E-9				NR [~ 8900000] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	5E-15		0.11692	[0.088-0.146] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	4E-17		0.124588	[0.096-0.154] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	6E-21		0.137371	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	3E-10		0.0936922	[0.065-0.123] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981125	1E-9		0.090427	[0.061-0.119] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	2E-8		0.086181	[0.056-0.116] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981049	6E-10		0.0944494	[0.065-0.124] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	3E-11		0.101931	[0.072-0.132] unit decrease	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	1E-18		0.12601	[0.098-0.154] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	3E-17		0.125387	[0.096-0.154] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	4E-18		0.125246	[0.097-0.153] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	2E-8		0.085655	[0.056-0.116] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	6E-9		0.0862306	[0.057-0.115] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.1		rs184334219-G	0.981127	4E-21		0.139528	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
910	chr15	42721844	42721845	rs184334219	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q15.1	ZFP106, ZNF106	rs184334219-?	NR	7E-24		0.098	[0.081-0.115] unit increase	Affymetrix [5701386] (imputed)	N
910	chr15	42721844	42721845	rs184334219	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q15.1	NR	rs184334219-G	0.981376	7E-11		0.0477781	[0.033-0.062] unit decrease	NR [NR]	N
910	chr15	42725683	42725684	rs201397736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q15.1	ZNF106	rs201397736-T	0.212695	3E-9		0.016620796	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
911	chr15	42744093	42744094	rs12440118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q15.1	CAPN3	rs12440118-?	NR	6E-6	(lactose)	0.23697333	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
911	chr15	42752829	42752830	rs12443246	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.1	ZNF106	rs12443246-G		1E-10		0.016	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
911	chr15	42756550	42756550	rs113858923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q15.1		rs113858923-CA	NR	4E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
911	chr15	42768197	42768198	rs1900920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q15.1	ZNF106	rs1900920-T	0.750641	4E-9		0.015269126	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
911	chr15	42768378	42768379	rs12913324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q15.1	NR	rs12913324-C	0.747285	5E-17		0.01795	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
911	chr15	42772780	42772781	rs62022317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q15.1	ZNF106	rs62022317-G	0.242272	3E-14		0.019610303	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr15	42772780	42772781	rs62022317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.1	NR	rs62022317-G	0.238517	1E-14				Affymetrix, Illumina [24332387] (imputed)	N
911	chr15	42782706	42782707	rs79672351	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	15q15.1	NR	rs79672351-T	0.01834	2E-6		0.5378	[0.32-0.76] unit decrease	Illumina [10677593] (imputed)	N
911	chr15	42859234	42859235	rs10851411	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	15q15.2	HAUS2, STARD9	rs10851411-?		6E-6	(SI+M)	0.14	[0.022-0.258] unit increase	Illumina [693128]	N
912	chr15	42902245	42902246	rs1197546	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	15q15.2	NR	rs1197546-A	0.129	4E-10		1.11204	[1.08-1.15]	Affymetrix, Illumina [7549318] (imputed)	N
912	chr15	42904903	42904904	rs4447398	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	15q15.2	STARD9	rs4447398-A	0.131	3E-9		1.08567	[1.06-1.11]	Affymetrix, Illumina [7549318] (imputed)	N
912	chr15	42904903	42904904	rs4447398	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	15q15.2		rs4447398-?	NR	2E-8		0.0154	NR unit decrease	NR [6265453] (imputed)	N
912	chr15	42904903	42904904	rs4447398	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	15q15.2	SNAP23, LRRC57, HAUS2, STARD9	rs4447398-A	0.123	9E-9		1.09878	[1.07-1.13]	NR [9372253] (imputed)	N
912	chr15	42953596	42953597	rs77757620	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q15.2	STARD9	rs77757620-?	NR	4E-7		0.155	[0.081-0.229] unit increase	Illumina [at least 13000000] (imputed)	N
912	chr15	42982089	42982090	rs202077402	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q15.2	NR	rs202077402-G	NR	2E-9		0.1227	[0.083-0.162] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr15	42984287	42984288	rs16957063	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	15q15.2	CDAN1	rs16957063-?	0.01	5E-7	(Ft4)			Illumina [496032]	N
913	chr15	43017425	43017426	rs16957091	26183928	Leng S	2015-07-16	Cancer Res	Implication of a Chromosome 15q15.2 Locus in Regulating UBR1 and Predisposing Smokers to MGMT Methylation in Lung.	MGMT methylation in smokers	296  European ancestry individuals with MGMT methylation, 867 European ancestry individuals without MGMT methylation	107 European and Hispanic individuals with MGMT methylation, 323 European and Hispanic individuals without MGMT methylation	15q15.2	STARD9, CDAN1, TTBK2, UBR1	rs16957091-G	0.23	3E-7		1.7	[1.39-2.07]	Illumina [1599980]	N
913	chr15	43021985	43021986	rs12594483	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	15q15.2	STARD9, CDAN1, TTBK2	rs12594483-A	0.115	2E-7		1.09516	[1.06-1.13]	NR [9372253] (imputed)	N
913	chr15	43030402	43030403	rs112968809	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	15q15.2	NR	rs112968809-A	0.229	3E-8		1.10362		NR [9372253] (imputed)	N
913	chr15	43071943	43071944	rs549283835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	15q15.2		rs549283835-A	NR	1E-10		0.2131	[0.15-0.28] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
913	chr15	43071943	43071944	rs549283835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	15q15.2		rs549283835-A	0.003939	1E-10		0.213078	[0.15-0.28] unit increase	Illumina [13477028] (imputed)	N
913	chr15	43078666	43078667	rs113177981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q15.2		rs113177981-?	NR	6E-8				NR [~ 8900000] (imputed)	N
913	chr15	43099549	43099550	rs149492745	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs149492745-C	NR	3E-30		0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
913	chr15	43099549	43099550	rs149492745	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs149492745-C	0.973	3E-24	(EA)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
913	chr15	43099549	43099550	rs149492745	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs149492745-C	0.972	2E-7	(Hispanic)	0.228	unit decrease	Affymetrix [at least 7091467] (imputed)	N
913	chr15	43099549	43099550	rs149492745	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs149492745-C	NR	4E-17		0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr15	43099549	43099550	rs149492745	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs149492745-C	0.973	4E-14	(EA)	0.091	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr15	43102592	43102593	rs11853250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q15.2	TTBK2	rs11853250-T	0.106145	6E-10		0.02244002	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr15	43237413	43237414	rs62020698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	15q15.2		rs62020698-T	NR	8E-9		0.0229	[0.015-0.031] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
914	chr15	43237413	43237414	rs62020698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q15.2		rs62020698-T	NR	7E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
914	chr15	43237413	43237414	rs62020698	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q15.2	UBR1	rs62020698-T	0.0917	9E-14		0.0245	[0.018-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
914	chr15	43237413	43237414	rs62020698	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs62020698-C	NR	2E-11		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
914	chr15	43237413	43237414	rs62020698	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.2	NR	rs62020698-C	0.91	4E-10	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
914	chr15	43237413	43237414	rs62020698	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	15q15.2	UBR1, CAPN3	rs62020698-T	0.07	4E-10		0.091	[0.062-0.12] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
915	chr15	43278725	43278726	rs143875230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q15.2		rs143875230-G	0.974695	4E-9		0.0764459	[0.051-0.102] unit increase	NR [11722792] (imputed)	N
915	chr15	43278725	43278726	rs143875230	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	15q15.2	NR	rs143875230-A	0.02	8E-10		1.25	NR	NR [8853336] (imputed)	N
915	chr15	43278725	43278726	rs143875230	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q15.2	UBR1	rs143875230-G	0.974649	2E-15		0.0129639	[0.0097-0.0162] unit increase	Affymetrix [13995440] (imputed)	N
915	chr15	43341746	43341747	rs62020748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q15.2		rs62020748-?	NR	1E-16				NR [~ 8900000] (imputed)	N
916	chr15	43468697	43468698	rs147525635	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q15.2	EPB42	rs147525635-G	0.440725	4E-12		0.0133628	[0.0096-0.0171] unit increase	Affymetrix [NR] (imputed)	N
916	chr15	43468697	43468698	rs147525635	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q15.2	EPB42	rs147525635-G	0.440675	9E-11		0.012819	[0.0089-0.0167] unit increase	Affymetrix [NR] (imputed)	N
916	chr15	43499435	43499436	rs45594632	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	15q15.2		rs45594632-?	NR	3E-8		0.0674894	[0.043-0.092] unit increase	NR [9800000] (imputed)	N
916	chr15	43499435	43499436	rs45594632	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	15q15.2		rs45594632-?	NR	3E-11		0.0782872	[0.055-0.102] unit decrease	NR [9800000] (imputed)	N
916	chr15	43499435	43499436	rs45594632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q15.2	EPB42	rs45594632-A	0.00629800000000003	8E-14		0.10659885	[0.079-0.135] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr15	43541138	43541139	rs542036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA		Intergenic	rs542036-C	0.2336	1E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
917	chr15	43557548	43557549	rs11853991	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q15.2	TGM5	rs11853991-G	0.3181	2E-8		0.012236137	[0.008-0.0165] unit increase	Affymetrix [up to 18485882] (imputed)	N
917	chr15	43558141	43558142	rs12909095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q15.2	Intergenic	rs12909095-A	0.7807	8E-9	(MTAG)	0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
917	chr15	43559230	43559231	rs748404	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	15q15.2	TGM5	rs748404-?	NR	1E-6		1.15	[1.09-1.20]	Illumina [511919]	N
917	chr15	43580644	43580645	rs117578063	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	15q15.2		rs117578063-C	0.958901	2E-8		0.0583661	[0.038-0.079] unit decrease	NR [11722792] (imputed)	N
917	chr15	43620442	43620443	rs514438	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q15.3	NR	rs514438-?	NR	1E-9				Affymetrix [NR]	N
917	chr15	43622264	43622265	rs3742970	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.3	LCMT2	rs3742970-A		3E-13		0.027	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
917	chr15	43623396	43623397	rs45617141	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	15q15.3		rs45617141-T	0.98	8E-12		0.246	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
917	chr15	43636474	43636474	rs150282133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q15.3	ADAL	rs150282133-AT	0.191446	5E-17		0.023592588	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
918	chr15	43671354	43671355	rs7163288	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	15q15.3		rs7163288-A	0.69	3E-10		0.08	unit decrease	Illumina [2093892] (imputed)	N
918	chr15	43671354	43671355	rs7163288	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	15q15.3		rs7163288-A	0.69	1E-8		0.09	unit decrease	Illumina [2398641] (imputed)	N
918	chr15	43674430	43674441	rs148149124	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q15.3	TUBGCP4	rs148149124-?	0.0281	1E-25		0.1011	[0.082-0.12] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
918	chr15	43674430	43674441	rs148149124	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q15.3	TUBGCP4	rs148149124-?	0.0281	6E-26		0.1018	[0.083-0.121] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
918	chr15	43677978	43677979	rs201393666	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	15q15.3	TUBGCP4	rs201393666-A	0.029	3E-8		0.097	[0.064-0.13] unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43681364	43681365	rs189027627	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	NR	rs189027627-?	NR	4E-7		0.3988	[0.24-0.55] unit decrease	Illumina [at least 560000] (imputed)	N
918	chr15	43685806	43685807	rs149181595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	15q15.3		rs149181595-A	0.972405	8E-15		0.0925017	[0.069-0.116] unit decrease	NR [11722792] (imputed)	N
918	chr15	43702947	43702948	rs16957709	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	15q15.3	TP53BP1	rs16957709-C	0.006	5E-7	(Influenza A)	1.04	[NR] unit increase	Illumina [944565]	N
918	chr15	43702963	43702964	rs34212866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q15.3		rs34212866-G	NR	1E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
918	chr15	43702963	43702964	rs34212866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q15.3	TP53BP1	rs34212866-G	0.22122	2E-16		0.021990025	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
918	chr15	43702963	43702964	rs34212866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs34212866-G	0.219054	1E-14				Affymetrix, Illumina [19872809] (imputed)	N
918	chr15	43702963	43702964	rs34212866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q15.3	NR	rs34212866-G	0.220743	6E-17		0.020115	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
918	chr15	43702963	43702964	rs34212866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q15.3		rs34212866-?	NR	4E-13				NR [~ 8900000] (imputed)	N
918	chr15	43703277	43703278	rs575505283	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	15q15.3	TP53BP1	rs575505283-AT		7E-17	(PLT)	0.16	[0.12-0.2] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
918	chr15	43713633	43713634	rs2242069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.3	NR	rs2242069-C	NR	1E-16		0.0274	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974296	2E-14		0.0964478	[0.072-0.121] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974323	2E-26		0.130783	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-40		0.167598	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	6E-39		0.1615	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-33		0.150228	[0.13-0.17] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	5E-25		0.126973	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	6E-47		0.182455	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	5E-27		0.134476	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-19		0.114303	[0.089-0.139] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	9E-42		0.170655	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	8E-34		0.153493	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-37		0.161533	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-25		0.132224	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	5E-34		0.15475	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-28		0.140858	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-21		0.11978	[0.095-0.144] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-33		0.154027	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-28		0.138418	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-34		0.156307	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-39		0.166907	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-28		0.141725	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	4E-31		0.146144	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-25		0.130748	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-24		0.130832	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-13		0.0951216	[0.07-0.121] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-23		0.126321	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-22		0.12482	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974325	7E-31		0.140058	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974325	8E-22		0.120063	[0.096-0.145] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974325	9E-24		0.125859	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-30		0.145502	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-34		0.152429	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974326	7E-28		0.138541	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	4E-14		0.098584	[0.073-0.124] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-26		0.138679	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-24		0.12922	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-12		0.0913605	[0.066-0.117] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-27		0.136405	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-20		0.119193	[0.094-0.144] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974325	9E-22		0.123444	[0.098-0.149] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-8		0.0731027	[0.048-0.098] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-39		0.164793	[0.14-0.19] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	7E-46		0.177029	[0.15-0.2] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-60		0.203739	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	6E-24		0.1275	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-26		0.133501	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	7E-26		0.135191	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-25		0.130683	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974296	2E-22		0.121387	[0.097-0.146] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974323	9E-17		0.107959	[0.083-0.133] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-11		0.0869756	[0.062-0.112] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-31		0.148192	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	7E-28		0.133936	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	5E-37		0.1602	[0.14-0.18] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974326	1E-8		0.0710475	[0.047-0.096] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-30		0.142751	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	5E-16		0.104248	[0.079-0.129] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-12		0.0910526	[0.066-0.117] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974296	1E-20		0.116023	[0.092-0.14] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	6E-16		0.106	[0.08-0.132] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-34		0.156738	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	6E-37		0.157633	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	4E-29		0.137692	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	3E-20		0.11746	[0.092-0.142] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	1E-21		0.122232	[0.097-0.147] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs150844304-A	0.974329	2E-17		0.103572	[0.08-0.127] unit decrease	NR [11722792] (imputed)	N
918	chr15	43726624	43726625	rs150844304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q15.3		rs150844304-C	NR	8E-19		0.0666	[0.052-0.081] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
918	chr15	43726624	43726625	rs150844304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q15.3		rs150844304-C	NR	9E-32		0.0718	[0.06-0.084] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
918	chr15	43726624	43726625	rs150844304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q15.3		rs150844304-C	NR	1E-24		0.0646	[0.052-0.077] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
918	chr15	43726624	43726625	rs150844304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q15.3		rs150844304-C	NR	8E-37		0.0931	[0.079-0.107] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
918	chr15	43726624	43726625	rs150844304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q15.3		rs150844304-C	NR	8E-27		0.0834	[0.068-0.099] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
918	chr15	43726624	43726625	rs150844304	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q15.3	TUBGCP4	rs150844304-A	0.974312	3E-33		0.00857458	[0.0071-0.01] unit increase	Affymetrix [13995440] (imputed)	N
918	chr15	43726624	43726625	rs150844304	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	15q15.3		rs150844304-A	0.97	2E-16		0.2196	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
918	chr15	43726624	43726625	rs150844304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q15.3	TP53BP1	rs150844304-C	0.025297	6E-15		0.0591753	[0.046-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr15	43726624	43726625	rs150844304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q15.3	TP53BP1	rs150844304-C	0.025293	2E-35		0.08860883	[0.075-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr15	43726624	43726625	rs150844304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q15.3	TP53BP1	rs150844304-C	0.025291	6E-34		0.08552511	[0.072-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr15	43726624	43726625	rs150844304	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q15.3	TP53BP1	rs150844304-A	0.974093	2E-51		0.0904093	[0.079-0.102] unit increase	Affymetrix [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q15.3	TP53BP1	rs150844304-A	0.974051	3E-34		0.075233	[0.063-0.087] unit increase	Affymetrix [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q15.3	NR	rs150844304-A	0.975286	4E-32		0.0769327	[0.064-0.09] unit decrease	NR [NR]	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	TP53BP1	rs150844304-C	NR	3E-33				Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	TP53BP1	rs150844304-C	NR	1E-31	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	TP53BP1	rs150844304-C	NR	5E-30	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	TP53BP1	rs150844304-C	NR	2E-31				Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	8E-29		0.09	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	3E-27	(EA)	0.093	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	8E-17		0.09	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	4E-16	(EA)	0.101	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	TP53BP1	rs150844304-C	NR	7E-33	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	TP53BP1	rs150844304-C	NR	3E-33				Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	TP53BP1	rs150844304-C	NR	8E-33	(EA)			Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	TP53BP1	rs150844304-C	NR	3E-35				Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	7E-19	(EA)	0.034	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	2E-20		0.033	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	4E-11	(EA)	0.03565	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	TP53BP1	rs150844304-C	NR	1E-11		0.03194	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43726624	43726625	rs150844304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q15.3		rs150844304-?	NR	1E-12				NR [~ 8900000] (imputed)	N
918	chr15	43726624	43726625	rs150844304	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs150844304-A	NR	5E-43		0.16	unit decrease	Affymetrix [at least 7091467] (imputed)	N
918	chr15	43726624	43726625	rs150844304	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs150844304-A	0.974	5E-6	(Hispanic)	0.198	unit decrease	Affymetrix [at least 7091467] (imputed)	N
918	chr15	43726624	43726625	rs150844304	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs150844304-A	0.97	2E-36	(EA)	0.155	unit decrease	Affymetrix [at least 7091467] (imputed)	N
918	chr15	43726624	43726625	rs150844304	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs150844304-A	NR	1E-24		0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
918	chr15	43726624	43726625	rs150844304	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs150844304-A	0.97	5E-21	(EA)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
918	chr15	43726624	43726625	rs150844304	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	Triglycerides	41,142 European ancestry individuals, 705 East Asian ancestry individuals, 6,287 African American individuals, 1,415 Hispanic individuals	60,827 European ancestry individuals, 9,982 Indian Asian ancestry individuals, 2,710 African American/Afro-Caribbean individuals	15q15.3	TP53BP1	rs150844304-A	0.96	1E-15		0.066	[0.05-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr15	43735762	43735763	rs2256764	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	15q15.3	TP53BP1	rs2256764-?	NR	8E-34	(conditional)	0.144	NR L decrease	Affymetrix [9390170] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	6E-43		0.176329	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-26		0.138932	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	1E-23		0.12829	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	5E-39		0.173162	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-46		0.18826	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-55		0.20372	[0.18-0.23] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	8E-34		0.156612	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	5E-13		0.0939635	[0.068-0.119] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	8E-19		0.116105	[0.09-0.142] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975775	4E-19		0.121234	[0.095-0.148] unit decrease	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-23		0.133543	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-34		0.157591	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	1E-20		0.119995	[0.095-0.145] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	6E-11		0.0787064	[0.055-0.102] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	8E-33		0.160649	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-10		0.0793907	[0.055-0.104] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-9		0.0705361	[0.047-0.094] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-10		0.0754055	[0.052-0.099] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-47		0.183923	[0.16-0.21] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-41		0.177652	[0.15-0.2] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	9E-12		0.082838	[0.059-0.107] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-15		0.095063	[0.072-0.119] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	1E-46		0.183815	[0.16-0.21] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-22		0.127849	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-26		0.135236	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	3E-18		0.118269	[0.092-0.145] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	2E-55		0.206328	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	1E-11		0.0831187	[0.059-0.107] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs190543502-T	0.975889	7E-14		0.0894798	[0.066-0.113] unit increase	NR [11722792] (imputed)	N
918	chr15	43757183	43757184	rs190543502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q15.3		rs190543502-C	NR	1E-14		0.0567	[0.042-0.071] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
918	chr15	43757183	43757184	rs190543502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs190543502-C	0.0237575	5E-48				Affymetrix, Illumina [24653286] (imputed)	N
918	chr15	43757183	43757184	rs190543502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q15.3	NR	rs190543502-C	0.024462	2E-49		0.089528	[0.078-0.101] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
918	chr15	43757183	43757184	rs190543502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs190543502-C	0.0237693	8E-35				Affymetrix, Illumina [24558453] (imputed)	N
918	chr15	43757183	43757184	rs190543502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q15.3	NR	rs190543502-C	0.024477	2E-36		0.076523	[0.065-0.088] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
918	chr15	43757183	43757184	rs190543502	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	15q15.3	TP53BP1	rs190543502-C	0.02721	3E-8		7.61	[4.92-10.3] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
919	chr15	43784474	43784475	rs2439831	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q15.3	TP53BP1	rs2439831-C	0.891060495	4E-6		1.1158895	[1.07-1.17]	Illumina [10439017] (imputed)	N
919	chr15	43813272	43813273	rs191422066	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	NR	rs191422066-?	NR	6E-7		0.6483	[0.39-0.9] unit decrease	Illumina [at least 560000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs55707100-C	0.974123	3E-9		0.0675826	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
919	chr15	43820716	43820717	rs55707100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs55707100-C	0.974123	1E-9		0.0786307	[0.053-0.104] unit decrease	NR [11722792] (imputed)	N
919	chr15	43820716	43820717	rs55707100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q15.3		rs55707100-T	NR	2E-11		0.0513	[0.036-0.066] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (2df)	73,908 European ancestry individuals	7,284 European ancestry individuals	15q15.3	MAP1A	rs55707100-T	0.0247	2E-13				Affymetrix [7953600] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	8E-82		0.1479	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	2E-12		0.0569	[0.041-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	2E-47		0.1171	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	1E-34		0.099	[0.083-0.115] unit increase	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	1E-20		0.0721	[0.057-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	1E-77		0.1504	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	5E-83		0.1494	[0.13-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	3E-36		0.1012	[0.085-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	1E-13		0.0572	[0.042-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	7E-34		0.0977	[0.082-0.114] unit increase	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	3E-25		0.0802	[0.065-0.095] unit increase	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-T	NR	3E-26		0.0855	[0.07-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.3	MAP1A	rs55707100-T		4E-36		0.086	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q15.3	NR	rs55707100-C	0.97462	8E-12		0.0269106	[0.019-0.035] unit increase	Affymetrix [16578495] (imputed)	N
919	chr15	43820716	43820717	rs55707100	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q15.3	NR	rs55707100-C	0.974801	2E-33		0.110844	[0.092-0.13] unit increase	Affymetrix [16577313] (imputed)	N
919	chr15	43820716	43820717	rs55707100	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	15q15.3		rs55707100-T	0.0328	7E-10	(EA)	0.0506	[0.035-0.067] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
919	chr15	43820716	43820717	rs55707100	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q15.3	MAP1A	rs55707100-T	0.0279	5E-28		0.0939	[0.077-0.111] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-C	NR	1E-41		0.156	unit decrease	Affymetrix [at least 7091467] (imputed)	N
919	chr15	43820716	43820717	rs55707100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-C	0.973	3E-6	(Hispanic)	0.204	unit decrease	Affymetrix [at least 7091467] (imputed)	N
919	chr15	43820716	43820717	rs55707100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-C	0.969	1E-35	(EA)	0.151	unit decrease	Affymetrix [at least 7091467] (imputed)	N
919	chr15	43820716	43820717	rs55707100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-C	NR	2E-22		0.102	unit increase	Affymetrix [at least 7091467] (imputed)	N
919	chr15	43820716	43820717	rs55707100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs55707100-C	0.969	1E-18	(EA)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
919	chr15	43820716	43820717	rs55707100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	15q15.3	MAP1A	rs55707100-T	0.0261	2E-26		0.1223192	[0.1-0.145] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q15.3	MAP1A	rs55707100-T	0.0261	2E-23		0.1142708	[0.092-0.137] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr15	43820716	43820717	rs55707100	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	15q15.3	MAP1A	rs55707100-?	0.0325	1E-17	(EA)	0.09	unit increase	Illumina [247644]	N
919	chr15	43836477	43836478	rs2251844	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	15q15.3	HISPPD2A	rs2251844-C	0.42	1E-14	(AFP)	0.087	[0.056-0.118] ng/ml increase	Affymetrix, Illumina [NR] (imputed)	N
919	chr15	43846035	43846036	rs2439843	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q15.3	Intergenic	rs2439843-A	0.7036	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
919	chr15	43895117	43895118	rs2447198	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q15.3	NR	rs2447198-C	0.2235	5E-10		0.034	[0.023-0.045] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
920	chr15	43913931	43913932	rs12912881	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,363 Icelandic ancestry individuals	NA	15q15.3		rs12912881-C	0.1777	4E-14		0.187466	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
920	chr15	43930605	43930606	rs35028925	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q15.3	NR	rs35028925-C	0.47	2E-7		0.92	[0.88-0.96]	Illumina [8468885] (imputed)	N
920	chr15	43930605	43930606	rs35028925	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	15q15.3	CATSPER2	rs35028925-A	0.559939357	2E-6		1.0992004	[1.06-1.14]	Illumina [10439017] (imputed)	N
920	chr15	43930605	43930606	rs35028925	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q15.3	CATSPER2	rs35028925-A	0.556909383	2E-6		1.0604849	[1.03-1.09]	Illumina [10439017] (imputed)	N
920	chr15	43933940	43933941	rs139097404	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	15q15.3		rs139097404-T	0.976486	2E-9		0.0832288	[0.056-0.11] unit increase	NR [11722792] (imputed)	N
920	chr15	43933940	43933941	rs139097404	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q15.3	CATSPER2	rs139097404-T	0.976384	9E-22		0.0161937	[0.013-0.02] unit increase	Affymetrix [13995440] (imputed)	N
920	chr15	43933940	43933941	rs139097404	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		15q15.3	STRC, CATSPER2	rs139097404-T	NR	4E-28		0.053097	[0.039-0.067] nmol/l increase	NR [19000000] (imputed)	N
920	chr15	43933940	43933941	rs139097404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q15.3	NR	rs139097404-T	0.976138	5E-18		0.054651	[0.042-0.067] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
920	chr15	43933940	43933941	rs139097404	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q15.3	CATSPER2	rs139097404-T	0.9746	9E-26		0.0988	[0.08-0.117] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
920	chr15	43941015	43941016	rs181750397	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	NR	rs181750397-?	NR	8E-8		0.245	[0.16-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
920	chr15	43950698	43950699	rs141866277	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q15.3	CATSPER2	rs141866277-A	0.975803	7E-34		0.0089349	[0.0074-0.0104] unit increase	Affymetrix [13995440] (imputed)	N
920	chr15	43995785	43995786	rs3110081	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q15.3	PDIA3	rs3110081-C	0.8209375	2E-9	(PDIA3, 7832_181_3)	0.19445653	[0.13-0.26] unit increase	Illumina [> 1000000] (imputed)	N
920	chr15	43995788	43995789	rs2470135	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q15.3	chr15mb43	rs2470135-T	0.281498346	2E-6		0.1437	[0.084-0.203] unit increase	Affymetrix [~ 9800000] (imputed)	N
920	chr15	44018655	44018656	rs35654783	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q15.3	CKMT1A, CATSPER2P1	rs35654783-T		1E-10		0.166	unit increase	Affymetrix [at least 2696785] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	2E-10		0.0830056	[0.058-0.108] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	2E-9		0.0742917	[0.05-0.098] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	2E-21		0.119139	[0.095-0.144] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	2E-11		0.0849452	[0.06-0.11] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	4E-24		0.126954	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	2E-15		0.10206	[0.077-0.127] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	8E-14		0.0958836	[0.071-0.121] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	2E-16		0.102576	[0.078-0.127] unit increase	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	1E-28		0.138506	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	9E-21		0.117068	[0.093-0.142] unit increase	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	2E-11		0.083441	[0.059-0.108] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	3E-15		0.100688	[0.076-0.126] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	4E-28		0.137138	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	2E-21		0.118563	[0.094-0.143] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974076	5E-12		0.0900258	[0.065-0.116] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	5E-24		0.127425	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	3E-29		0.140793	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	1E-15		0.103299	[0.078-0.129] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	1E-8		0.0706679	[0.046-0.095] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	1E-8		0.0732214	[0.048-0.098] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	1E-8		0.0741159	[0.049-0.1] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	6E-27		0.134541	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	3E-17		0.109138	[0.084-0.134] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	8E-10		0.0795214	[0.054-0.105] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	2E-18		0.112828	[0.088-0.138] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	1E-24		0.128731	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974088	3E-27		0.135513	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	15q15.3		rs139974673-T	0.974084	6E-21		0.121485	[0.096-0.147] unit decrease	NR [11722792] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q15.3		rs139974673-C	NR	8E-84		0.1444	[0.13-0.16] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q15.3		rs139974673-C	NR	4E-38		0.1038	[0.088-0.119] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q15.3		rs139974673-C	NR	1E-45		0.1051	[0.091-0.12] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q15.3		rs139974673-C	NR	5E-8		0.0417	[0.027-0.057] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q15.3		rs139974673-C	NR	2E-36		0.1002	[0.085-0.116] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q15.3		rs139974673-T	0.974	6E-31				Affymetrix [10369434] (imputed)	N
920	chr15	44027884	44027885	rs139974673	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	15q15.3	PDIA3	rs139974673-?	NR	5E-21		0.214	NR L increase	Affymetrix [9390170] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.0255840000000001	2E-9		0.041895587	[0.028-0.056] unit increase	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.025595	2E-14		0.053842288	[0.04-0.068] unit increase	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.025605	3E-66		0.12321971	[0.11-0.14] unit increase	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.025603	6E-60		0.116825484	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.025585	4E-19		0.062593564	[0.049-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.0255880000000001	6E-14		0.05262562	[0.039-0.066] unit increase	Affymetrix [93095623] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.0255251	4E-12				Affymetrix, Illumina [24649327] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.026259	2E-14		0.044688	[0.033-0.056] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-T	0.97464	2E-17				Affymetrix, Illumina [22063850] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.0255129	1E-84				Affymetrix, Illumina [24588908] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.026277	3E-87		0.114751	[0.1-0.13] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.0253398	3E-16				Affymetrix, Illumina [24246363] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.0251527	1E-24				Affymetrix, Illumina [20825802] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.025962	2E-26		0.064694	[0.053-0.077] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.025286	6E-17				Affymetrix, Illumina [23472807] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q15.3	NR	rs139974673-C	0.026033	2E-19		0.054097	[0.042-0.066] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q15.3	PDIA3	rs139974673-T	0.973868	2E-115		0.142694	[0.13-0.15] unit decrease	Affymetrix [NR] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q15.3	CATSPER2P1	rs139974673-?	NR	1E-73		0.1526	[0.14-0.17] unit increase	Affymetrix [5701386] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q15.3	NR	rs139974673-T	0.974544	5E-147		0.0656366	[0.06-0.071] unit increase	Affymetrix [16582909] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q15.3	NR	rs139974673-T	0.974365	1E-49		0.0537154	[0.046-0.061] unit increase	Affymetrix [16585854] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q15.3	NR	rs139974673-T	0.974734	5E-110		0.0783027	[0.071-0.086] unit increase	Affymetrix [16582621] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q15.3	NR	rs139974673-T	0.974544	2E-96		0.0609208	[0.055-0.067] unit increase	Affymetrix [16582965] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q15.3	NR	rs139974673-T	0.974365	8E-30		0.0481421	[0.039-0.057] unit increase	Affymetrix [16585866] (imputed)	N
920	chr15	44027884	44027885	rs139974673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q15.3	NR	rs139974673-T	0.974734	3E-84		0.07389	[0.066-0.082] unit increase	Affymetrix [16582614] (imputed)	N
920	chr15	44027884	44027885	rs139974673	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.0251253	1E-15		0.160596	[0.12-0.2] unit increase	Affymetrix [9463307] (imputed)	N
920	chr15	44027884	44027885	rs139974673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q15.3		rs139974673-?	NR	2E-10				NR [~ 8900000] (imputed)	N
920	chr15	44027884	44027885	rs139974673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.026	4E-10		0.07087201	[0.049-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr15	44027884	44027885	rs139974673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q15.3	CATSPER2P1	rs139974673-C	0.0261	8E-11		0.07306267	[0.051-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	15q15.3		rs147233090-C	0.975416	3E-17		0.10949	[0.084-0.135] unit increase	NR [11722792] (imputed)	N
920	chr15	44028046	44028047	rs147233090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	15q15.3		rs147233090-C	0.97542	2E-10		0.0759128	[0.052-0.099] unit increase	NR [11722792] (imputed)	N
920	chr15	44028046	44028047	rs147233090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	15q15.3		rs147233090-C	0.975421	1E-23		0.131817	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
920	chr15	44028046	44028047	rs147233090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	15q15.3		rs147233090-C	0.97542	3E-12		0.0842679	[0.061-0.108] unit increase	NR [11722792] (imputed)	N
920	chr15	44028046	44028047	rs147233090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs147233090-C	0.97542	2E-28		0.144105	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
920	chr15	44028046	44028047	rs147233090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q15.3		rs147233090-T	NR	4E-81		0.1534	[0.14-0.17] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
920	chr15	44028046	44028047	rs147233090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q15.3		rs147233090-T	NR	4E-15		0.0608	[0.046-0.076] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
920	chr15	44028046	44028047	rs147233090	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q15.3	NR	rs147233090-T	0.02481	1E-33		0.008869	[0.0074-0.0103] unit increase	Affymetrix [NR] (imputed)	N
920	chr15	44028046	44028047	rs147233090	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q15.3	CATSPER2P1	rs147233090-?		3E-10		0.1209	[0.083-0.159] unit decrease	Illumina [31500000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q15.3	CATSPER2P1	rs147233090-T	0.024521	2E-16		0.05962519	[0.045-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr15	44028046	44028047	rs147233090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q15.3	NR	rs147233090-T	0.0239279	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
920	chr15	44028046	44028047	rs147233090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q15.3	NR	rs147233090-T	0.024713	1E-11		0.044073	[0.031-0.057] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
920	chr15	44028046	44028047	rs147233090	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.3	MAP1A	rs147233090-T		8E-35		0.085	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	15q15.3	NR	rs147233090-T	0.0267	1E-26				Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q15.3		rs147233090-?	NR	5E-21				NR [~ 8900000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	15q15.3	intergenic	rs147233090-T	0.0299	4E-8		7.2	[4.61-9.79] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
920	chr15	44028046	44028047	rs147233090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	15q15.3	CATSPER2P1	rs147233090-T	0.0241	7E-15		0.0928193	[0.069-0.116] unit decrease	Affymetrix [~ 2500000] (imputed)	N
920	chr15	44028046	44028047	rs147233090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	15q15.3	CATSPER2P1	rs147233090-T	0.0241	5E-10		0.073863	[0.051-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr15	44052247	44052248	rs117519814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	15q15.3		rs117519814-G	0.932577	4E-9		0.0477823	[0.032-0.064] unit increase	NR [11722792] (imputed)	N
921	chr15	44052247	44052248	rs117519814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	15q15.3		rs117519814-G	0.932577	2E-8		0.0457782	[0.03-0.062] unit increase	NR [11722792] (imputed)	N
921	chr15	44052247	44052248	rs117519814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q15.3		rs117519814-G	0.932577	3E-9		0.0474221	[0.032-0.063] unit increase	NR [11722792] (imputed)	N
921	chr15	44052247	44052248	rs117519814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	15q15.3		rs117519814-G	0.932577	2E-8		0.0446063	[0.029-0.06] unit increase	NR [11722792] (imputed)	N
921	chr15	44052247	44052248	rs117519814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q15.3		rs117519814-G	0.932577	1E-8		0.0455642	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
921	chr15	44053616	44053617	rs8040336	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q15.3	NR	rs8040336-C	0.47	4E-6		0.93	[0.91-0.95]	Illumina [8468885] (imputed)	N
921	chr15	44063858	44063859	rs3087657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q15.3	Intergenic	rs3087657-A	0.7197	1E-9	(MTAG)	0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
921	chr15	44148426	44148427	rs28413704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q15.3		rs28413704-G	NR	1E-10		0.0201	[0.014-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
921	chr15	44155757	44155758	rs2412819	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q15.3	WDR76	rs2412819-A	0.6187932970000001	3E-6		1.0664301	[1.04-1.1]	Illumina [10439017] (imputed)	N
921	chr15	44160581	44160582	rs11856795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q15.3	NR	rs11856795-T	NR	6E-15		0.0317	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
921	chr15	44160581	44160582	rs11856795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	15q15.3	NR	rs11856795-T	NR	1E-9		0.026	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr15	44160581	44160582	rs11856795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.3	NR	rs11856795-T	NR	1E-11		0.0289	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
921	chr15	44160581	44160582	rs11856795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q15.3	NR	rs11856795-T	NR	4E-25		0.0439	[0.036-0.052] unit increase	Affymetrix [9000000] (imputed)	N
921	chr15	44160581	44160582	rs11856795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q15.3	NR	rs11856795-T	NR	2E-15		0.0323	[0.024-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr15	44165012	44165012	rs112441486	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.3	FRMD5	rs112441486-CTATT		8E-13		0.028	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
922	chr15	44185330	44185330	rs544955246	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q15.3	FRMD5	rs544955246-A	0.9813	3E-13		0.0567	[0.042-0.072] unit increase	Affymetrix [18391927] (imputed)	N
922	chr15	44211272	44211273	rs492571	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	15q15.3		rs492571-T	0.9553	4E-7	(EA)	0.0333	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
922	chr15	44211272	44211273	rs492571	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	15q15.3		rs492571-T	0.956	3E-9	(EA)	0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
922	chr15	44218135	44218136	rs481837	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs481837-C	NR	8E-18		0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44218135	44218136	rs481837	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs481837-C	0.956	5E-19	(EA)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44218135	44218136	rs481837	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs481837-C	NR	3E-9		0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44218135	44218136	rs481837	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs481837-C	0.956	1E-9	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44219606	44219607	rs16948098	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	15q15.3	FRMD5, WDR76	rs16948098-A	0.06	2E-8	(EA)	0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
922	chr15	44243511	44243512	rs59770554	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q15.3	FRMD5	rs59770554-C	0.96	6E-9		5.82	z-score increase	Affymetrix [4311822] (imputed)	N
922	chr15	44245930	44245931	rs2929282	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	15q15.3		rs2929282-A	0.9498	6E-7	(EA)	0.0321	[0.02-0.045] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
922	chr15	44245930	44245931	rs2929282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs2929282-A	NR	3E-15		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44245930	44245931	rs2929282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs2929282-A	0.946	8E-20	(EA)	0.089	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44245930	44245931	rs2929282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs2929282-A	NR	1E-8		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44245930	44245931	rs2929282	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs2929282-A	0.946	2E-10	(EA)	0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44245930	44245931	rs2929282	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	15q15.3	FRMD5	rs2929282-A	0.0	2E-8	(Trans-ethnic initial)	0.0725	[0.049-0.096] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
922	chr15	44245930	44245931	rs2929282	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q15.3	FRMD5	rs2929282-T	0.07	2E-9		0.072	[NR] mg/dL increase	NR [NR] (imputed)	N
922	chr15	44245930	44245931	rs2929282	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q15.3	FRMD5	rs2929282-T	0.05	2E-11		5.13	[3.44-6.82] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
922	chr15	44250312	44250313	rs2929278	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q15.3	NR	rs2929278-C	NR	6E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
922	chr15	44257953	44257954	rs2957582	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q15.3	NR	rs2957582-?	NR	2E-8		1.0588622	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
922	chr15	44262874	44262875	rs2623015	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	15q15.3	NR	rs2623015-C	0.04709	3E-6		0.6957	[0.22-1.17] unit increase	Illumina [at least 567677] (imputed)	N
922	chr15	44262950	44262951	rs146906133	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	FRMD5	rs146906133-T	1.0	2E-8		0.38	[0.32-0.45] unit increase	Illumina [at least 560000] (imputed)	N
922	chr15	44266729	44266730	rs138570705	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	15q15.3	CAPN3	rs138570705-?	NR	7E-15		0.04568	[0.03-0.061] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
922	chr15	44266729	44266730	rs138570705	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q15.3	-	rs138570705-?	NR	1E-13		0.02461	[0.017-0.032] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
922	chr15	44266729	44266730	rs138570705	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	15q15.3	NR	rs138570705-?	NR	3E-7		0.07912342	[0.049-0.109] unit increase	Illumina [31978265] (imputed)	N
922	chr15	44266729	44266730	rs138570705	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs138570705-G	NR	9E-31		0.138	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44266729	44266730	rs138570705	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs138570705-G	0.971	7E-27	(EA)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44266729	44266730	rs138570705	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs138570705-G	NR	5E-19		0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44266729	44266730	rs138570705	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q15.3	NR	rs138570705-G	0.971	3E-16	(EA)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
922	chr15	44266729	44266730	rs138570705	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	15q15.3	FRMD5	rs138570705-A	0.02	3E-8		0.115	[0.074-0.156] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
922	chr15	44293136	44293137	rs11638352	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	15q15.3	FRMD5, MFAP1	rs11638352-C	0.04988	7E-13		7.25	[5.27-9.23] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
923	chr15	44322404	44322405	rs1863600	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q15.3	FRMD5	rs1863600-C		1E-18		0.045	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
923	chr15	44323171	44323171	rs55964111	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	15q15.3	FRMD5	rs55964111-GA	0.7	2E-7		1.79	[1.44-2.23]	Affymetrix [up to 9627525] (imputed)	N
923	chr15	44355361	44355362	rs143573049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q15.3		rs143573049-?	NR	6E-13				NR [~ 8900000] (imputed)	N
923	chr15	44363738	44363739	rs144022883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q15.3		rs144022883-G	0.975158	2E-9		0.0771824	[0.052-0.102] unit increase	NR [11722792] (imputed)	N
923	chr15	44408400	44408401	rs2733201	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	15q15.3	FRMD5	rs2733201-T	0.07311	6E-13		7.3	[5.32-9.28] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
924	chr15	44491385	44491386	rs140427966	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	NR	rs140427966-?	NR	1E-7		0.3806	[0.24-0.52] unit decrease	Illumina [at least 560000] (imputed)	N
925	chr15	44564691	44564692	rs144972973	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	15q15.3	intergenic	rs144972973-G	0.02588	1E-9		9.93	[6.74-13.12] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
925	chr15	44565932	44565933	rs78496852	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q15.3	CASC4	rs78496852-G	0.989098	5E-8	(-108 ms)	0.164731	[0.1-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
925	chr15	44565932	44565933	rs78496852	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q15.3	CASC4	rs78496852-G	0.989098	4E-8	(-106 ms)	0.167565	[0.11-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
926	chr15	44720010	44720011	rs116908763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q15.3		rs116908763-T	NR	9E-10		0.0295	[0.02-0.039] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
926	chr15	44720010	44720011	rs116908763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q15.3	CTDSPL2	rs116908763-T	0.034391	2E-11		0.04333	[0.032-0.054] unit increase	Affymetrix [93095623] (imputed)	N
926	chr15	44720010	44720011	rs116908763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q15.3	CTDSPL2	rs116908763-T	0.034404	2E-9		0.0368235	[0.025-0.049] unit increase	Affymetrix [93095623] (imputed)	N
926	chr15	44720010	44720011	rs116908763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q15.3	CTDSPL2	rs116908763-T	0.0343869999999999	3E-16		0.049489774	[0.038-0.061] unit increase	Affymetrix [93095623] (imputed)	N
926	chr15	44720010	44720011	rs116908763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q15.3	NR	rs116908763-C	0.96608	3E-18		0.044933	[0.035-0.055] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
926	chr15	44720010	44720011	rs116908763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q15.3		rs116908763-?	NR	3E-18				NR [~ 8900000] (imputed)	N
926	chr15	44720010	44720011	rs116908763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q15.3	CTDSPL2	rs116908763-T	0.0344	2E-10		0.06196605	[0.043-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
926	chr15	44753033	44753034	rs182345433	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q15.3	NR	rs182345433-?	NR	9E-7		0.348	[0.21-0.49] unit decrease	Illumina [at least 560000] (imputed)	N
926	chr15	44784374	44784375	rs28487964	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	15q15.3		rs28487964-T	0.971887	5E-8		0.0703632	[0.045-0.096] unit decrease	NR [11722792] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	5E-12				Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	2E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	7E-12				Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	4E-11		0.068	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	2E-10	(EA)	0.071	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	3E-6	(EA)	0.077	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	2E-7		0.072	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	6E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	1E-16				Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	3E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q15.3	CTDSPL2	rs28487964-A	NR	1E-17				Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	9E-6	(Hispanic)	0.056	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	8E-9	(EA)	0.028	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	5E-11		0.03	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44784374	44784375	rs28487964	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q15.3	CTDSPL2	rs28487964-A	NR	3E-7		0.02939	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr15	44821842	44821843	rs2556560	30610941	Wang AW	2019-01-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk.	Anti-Toxoplasma gondii IgG seropositivity	256 Ashkenazi Jewish cases, 68 African American cases, 534 Ashkenazi Jewish controls, 217 African American controls	NA	15q21.1	CTDSPL2, EIF3J, SPG11, PATL2	rs2556560-?		5E-6	(AA)	7.4		Affymetrix, Illumina [up to 1101633] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974685	1E-10		0.0836773	[0.058-0.109] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974725	3E-18		0.110307	[0.085-0.135] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	7E-19		0.115235	[0.09-0.141] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-26		0.138481	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	8E-24		0.128405	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-18		0.110062	[0.085-0.135] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-20		0.119196	[0.094-0.144] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	7E-17		0.105877	[0.081-0.131] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-27		0.142162	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-17		0.110295	[0.085-0.136] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	6E-10		0.0808154	[0.055-0.106] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	3E-26		0.137854	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-20		0.119993	[0.094-0.146] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-24		0.131804	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-16		0.107469	[0.082-0.133] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	7E-20		0.119765	[0.094-0.145] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-18		0.114568	[0.089-0.14] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-14		0.0987737	[0.073-0.124] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	6E-19		0.116867	[0.091-0.143] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	6E-18		0.111722	[0.086-0.137] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	9E-20		0.119679	[0.094-0.145] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-22		0.126679	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	6E-18		0.113495	[0.088-0.139] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-19		0.117017	[0.092-0.142] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	3E-16		0.105756	[0.08-0.131] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-14		0.101342	[0.075-0.127] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-15		0.102335	[0.077-0.128] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-13		0.0970186	[0.071-0.123] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974732	6E-20		0.114193	[0.09-0.139] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974732	5E-14		0.0973595	[0.072-0.123] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974732	6E-16		0.104448	[0.079-0.13] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-23		0.128678	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-11		0.0854802	[0.06-0.111] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	9E-22		0.122571	[0.098-0.148] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974728	8E-17		0.10887	[0.083-0.134] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-14		0.0991375	[0.074-0.125] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-15		0.103185	[0.078-0.129] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-17		0.109175	[0.084-0.135] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	9E-12		0.0907042	[0.065-0.117] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974732	3E-13		0.0971199	[0.071-0.123] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-14		0.10281	[0.077-0.129] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	8E-24		0.128872	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-25		0.134082	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-16		0.103914	[0.079-0.129] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-30		0.146993	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-18		0.117185	[0.091-0.143] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-9		0.0758588	[0.051-0.1] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-15		0.101962	[0.076-0.127] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	7E-17		0.107961	[0.083-0.133] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-15		0.105086	[0.079-0.131] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	6E-16		0.104968	[0.08-0.13] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-8		0.0665681	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974685	2E-15		0.102453	[0.077-0.128] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974725	4E-9		0.0787459	[0.053-0.105] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	8E-9		0.0764948	[0.05-0.103] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-17		0.111509	[0.086-0.137] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-20		0.116863	[0.092-0.142] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-22		0.125378	[0.1-0.151] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-20		0.11764	[0.093-0.143] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-9		0.080716	[0.055-0.107] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	8E-10		0.074144	[0.051-0.098] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	3E-11		0.0792315	[0.056-0.103] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974685	1E-14		0.0989757	[0.074-0.124] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	4E-16		0.106383	[0.081-0.132] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	8E-21		0.123646	[0.098-0.15] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-19		0.114694	[0.09-0.14] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-22		0.125583	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	1E-20		0.118167	[0.093-0.143] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-12		0.0921969	[0.066-0.118] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	5E-10		0.0753481	[0.052-0.099] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-13		0.0968084	[0.071-0.123] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-10		0.0757154	[0.052-0.099] unit increase	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.1		rs151291132-A	0.974731	2E-12		0.0880982	[0.063-0.113] unit decrease	NR [11722792] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	8E-47		0.1145	[0.099-0.13] unit increase	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	7E-32		0.0985	[0.082-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	9E-20		0.0759	[0.06-0.092] unit increase	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	8E-10		0.049	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	2E-40		0.1112	[0.095-0.128] unit increase	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	1E-53		0.123	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	7E-18		0.0718	[0.056-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	2E-16		0.0688	[0.052-0.085] unit increase	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	2E-20		0.074	[0.058-0.09] unit increase	Affymetrix [9000000] (imputed)	N
927	chr15	44842209	44842210	rs151291132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.1	NR	rs151291132-G	NR	1E-12		0.0595	[0.043-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr15	44880782	44880783	rs148770227	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.1		rs148770227-C	0.975355	4E-10		0.0852446	[0.059-0.112] unit increase	NR [11722792] (imputed)	N
927	chr15	44880782	44880783	rs148770227	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.1	NR	rs148770227-C	0.975456	6E-26		0.0691649	[0.056-0.082] unit decrease	NR [NR]	N
927	chr15	44934254	44934255	rs75231500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q21.1		rs75231500-G	NR	2E-8		0.0365	[0.024-0.049] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
927	chr15	44936578	44936579	rs145326144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.1		rs145326144-T	0.975252	9E-9		0.0688574	[0.045-0.092] unit increase	NR [11722792] (imputed)	N
927	chr15	44936578	44936579	rs145326144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	15q21.1		rs145326144-T	0.975258	3E-8		0.0757935	[0.049-0.102] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	5E-29		0.142023	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	4E-24		0.132956	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	5E-29		0.145492	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	2E-35		0.159484	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	1E-18		0.115415	[0.09-0.141] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974685	5E-17		0.11219	[0.086-0.138] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	2E-15		0.106833	[0.08-0.133] unit decrease	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	4E-39		0.166859	[0.14-0.19] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	1E-31		0.14727	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	1E-26		0.139256	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	7E-31		0.146399	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	1E-8		0.0768864	[0.051-0.103] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.1		rs4273010-T	0.974838	3E-34		0.158792	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
927	chr15	44947433	44947434	rs4273010	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.1	SPG11	rs4273010-T	0.974627	2E-29		0.0695504	[0.057-0.082] unit increase	Affymetrix [NR] (imputed)	N
927	chr15	44947433	44947434	rs4273010	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.1	SPG11	rs4273010-T	0.9746	3E-20		0.0584625	[0.046-0.071] unit increase	Affymetrix [NR] (imputed)	N
928	chr15	44999475	44999476	rs181576645	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q21.1	NR	rs181576645-?	NR	2E-7		0.3635	[0.23-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
928	chr15	45038699	45038700	rs549677458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.1	NR	rs549677458-A	0.997995	8E-15		0.0878398	[0.065-0.111] unit increase	Affymetrix [16582909] (imputed)	N
928	chr15	45038699	45038700	rs549677458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.1	NR	rs549677458-A	0.997985	3E-13		0.116133	[0.084-0.148] unit increase	Affymetrix [16582621] (imputed)	N
928	chr15	45038699	45038700	rs549677458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.1	NR	rs549677458-A	0.997995	5E-10		0.0808837	[0.055-0.107] unit increase	Affymetrix [16582965] (imputed)	N
928	chr15	45038699	45038700	rs549677458	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.1	NR	rs549677458-A	0.997985	7E-9		0.0996408	[0.065-0.134] unit increase	Affymetrix [16582614] (imputed)	N
929	chr15	45120166	45120167	rs371570792	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q21.1	TRIM69	rs371570792-CT	0.737	5E-12		0.593	[0.42-0.76] unit increase	Affymetrix [NR] (imputed)	N
929	chr15	45153409	45153410	rs2470907	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.1	NR	rs2470907-?	NR	1E-6				Affymetrix [NR]	N
931	chr15	45357409	45357410	rs2854437	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	15q21.1	SORD	rs2854437-G	0.87	2E-6		1.2345679	[1.14-1.35]	NR [NR]	N
931	chr15	45361240	45361241	rs55713047	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q21.1	NR	rs55713047-?	NR	5E-7		0.474574	[0.29-0.66] unit increase	NR [13958389] (imputed)	N
931	chr15	45371394	45371395	rs146764173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q21.1		rs146764173-?	NR	8E-8				NR [~ 8900000] (imputed)	N
931	chr15	45398437	45398438	rs57659670	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	15q21.1	DUOX2	rs57659670-C	0.0753	6E-12		0.058	[0.074-0.041] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
931	chr15	45398437	45398438	rs57659670	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	15q21.1	DUOX2	rs57659670-C	0.0753	4E-19		0.077	[0.06-0.094] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
931	chr15	45398437	45398438	rs57659670	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	15q21.1	DUOX2	rs57659670-C	0.0753	1E-8		0.042	[0.056-0.028] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
931	chr15	45398437	45398438	rs57659670	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	15q21.1	DUOX2	rs57659670-C	0.0753	1E-113		0.14	[0.16-0.13] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
931	chr15	45420717	45420718	rs1365242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs1365242-C	NR	3E-20		0.022	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr15	45420717	45420718	rs1365242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs1365242-C	NR	3E-21		0.0227	[0.018-0.027] unit increase	Affymetrix [9000000] (imputed)	N
931	chr15	45427034	45427035	rs76275337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs76275337-A	NR	6E-26		0.0375	[0.03-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr15	45427034	45427035	rs76275337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs76275337-A	NR	2E-26		0.038	[0.031-0.045] unit increase	Affymetrix [9000000] (imputed)	N
931	chr15	45428711	45428712	rs72724253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs72724253-T	NR	3E-10		0.0234	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
931	chr15	45428711	45428712	rs72724253	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs72724253-T	NR	7E-11		0.0242	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr15	45446027	45446028	rs8038802	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.1		rs8038802-C	0.13	2E-11		6.69	z score increase	Affymetrix [9061022] (imputed)	N
931	chr15	45459563	45459564	rs1629906	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.1		rs1629906-G	0.13	1E-23		10.02	z score increase	Affymetrix [9061022] (imputed)	N
931	chr15	45477011	45477012	rs1706821	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	15q21.1	SLC28A2	rs1706821-A	0.35	8E-25	(adenosine)	0.289	[0.23-0.34] unit increase	Illumina [7750367] (imputed)	N
932	chr15	45485830	45485831	rs62026663	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	15q21.1	SHF	rs62026663-C	0.096	2E-6		3.221	[1.987-5.221]	Illumina [7585874] (imputed)	N
932	chr15	45490770	45490771	rs75620472	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q21.1	NR	rs75620472-G	0.0927	2E-9				NR [9056863] (imputed)	N
932	chr15	45492951	45492952	rs116879015	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	15q21.1	SHF	rs116879015-?	NR	2E-6				Affymetrix, Illumina [15642250] (imputed)	N
932	chr15	45495954	45495955	rs12438970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs12438970-C	NR	1E-22		0.0521	[0.042-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr15	45495954	45495955	rs12438970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs12438970-C	NR	4E-23		0.0527	[0.042-0.063] unit increase	Affymetrix [9000000] (imputed)	N
932	chr15	45500046	45500047	rs765787	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	15q21.1	SLC28A2	rs765787-G	0.15	3E-6		20.9	[NR] umol/L increase	Affymetrix [2241249] (imputed)	N
932	chr15	45516051	45516052	rs11854689	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	15q21.1	SLC28A2	rs11854689-A	0.32	1E-26	(inosine)	0.402	[0.33-0.48] unit increase	Illumina [7750367] (imputed)	N
932	chr15	45523247	45523248	rs16940897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs16940897-T	NR	1E-9		0.0268	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr15	45523247	45523248	rs16940897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs16940897-T	NR	4E-10		0.0275	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
932	chr15	45546659	45546660	rs9921035	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.1	NR	rs9921035-?	NR	9E-6				Affymetrix [NR]	N
932	chr15	45605281	45605282	rs75562043	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 63)	19,670 European ancestry individuals	NA	15q21.1		rs75562043-?	NR	2E-8				NR [9705931] (imputed)	N
933	chr15	45624670	45624671	rs139180550	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q21.1	NR	rs139180550-?	NR	1E-6		0.583689	[0.35-0.82] unit increase	NR [13958389] (imputed)	N
933	chr15	45637287	45637288	rs76825670	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q21.1	intergenic	rs76825670-A	0.7834	5E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
933	chr15	45637342	45637343	rs35861938	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine-ether levels	2,045 European ancestry individuals	NA	15q21.1	GATM	rs35861938-C	NR	3E-8	(PCO(18:2;0-18:1;0))	0.177	[0.11-0.24] unit increase	Illumina [~ 9300000] (imputed)	N
933	chr15	45641224	45641225	rs2453533	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		15q21.1	GATM	rs2453533-A	NR	3E-43		0.0135	[0.012-0.015] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
933	chr15	45641224	45641225	rs2453533	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	15q21.1	GATM	rs2453533-A	NR	5E-41		0.0125	[0.011-0.014] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr15	45641224	45641225	rs2453533	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q21.1	SPATA5L1, GATM	rs2453533-?	0.38	5E-22	(eGFRcrea)			Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr15	45646225	45646226	rs2433603	33783510	Fatumo S	2021-03-30	Hum Mol Genet	Discovery and fine-mapping of kidney function loci in first genome-wide association study in Africans.	Estimated glomerular filtration rate	3,288 Ugandan ancestry individuals	8,224 African American individuals	15q21.1		rs2433603-T	0.47	2E-9		1.0276	[0.43-1.62] unit increase (replication)	Illumina [20594556] (imputed)	N
933	chr15	45646282	45646283	rs61524473	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	15q21.1	GATM, SPAT5L1, LOC101928414	rs61524473-C	0.26	1E-15	(Creatinine)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
933	chr15	45647426	45647427	rs2461702	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	15q21.1		rs2461702-G	0.49	1E-10		0.63	[0.43-0.83] ml/min/1.73 m2 decrease	NR [43622178]	N
933	chr15	45649812	45649813	rs1145093	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q21.1	SLC28A2	rs1145093-C	0.2883	1E-56		15.857	NR z score increase	Illumina [26237160] (imputed)	N
933	chr15	45652277	45652278	rs62025168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs62025168-A	NR	3E-43		0.0423	[0.036-0.048] unit increase	Affymetrix [9000000] (imputed)	N
933	chr15	45652277	45652278	rs62025168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs62025168-A	NR	2E-44		0.043	[0.037-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr15	45652702	45652703	rs1153858	24047826	Kleber ME	2013-09-18	Circ Cardiovasc Genet	Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: the AtheroRemo Consortium.	Homoarginine levels	5,143 European ancestry individuals	1,474 European ancestry individuals	15q21.1	GATM	rs1153858-C	0.72	1E-45		0.271	[NR] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
933	chr15	45654347	45654348	rs768171759	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	15q21.1		rs768171759-?	NR	2E-9		0.590846	[0.4-0.79] unit decrease	NR [9800000] (imputed)	N
933	chr15	45657803	45657804	rs1145085	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.1	GATM	rs1145085-A	0.45397	4E-43	(homoarginine)	0.332	[0.28-0.38] unit decrease	Illumina [13039987] (imputed)	N
933	chr15	45660757	45660758	rs1153855	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q21.1	GATM	rs1153855-C	0.6213	6E-216		0.0086	[0.0078-0.0094] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
933	chr15	45665652	45665653	rs2433611	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	15q21.1	GATM	rs2433611-A	0.2594	9E-15		0.0175444	[0.013-0.022] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
933	chr15	45668603	45668615	rs6145546	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	15q21.1	GATM	rs6145546-G	0.45	2E-17		0.777	[0.6-0.96] unit decrease	Affymetrix [NR] (imputed)	N
933	chr15	45672252	45672253	rs2486272	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q21.1	BC039389	rs2486272-T	0.65	8E-104		1.241	[1.13-1.35] unit increase	Affymetrix [NR] (imputed)	N
933	chr15	45682276	45682277	rs1145078	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	15q21.1	GATM	rs1145078-T	NR	9E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
933	chr15	45683794	45683795	rs1145077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q21.1	GATM	rs1145077-T	0.4206	6E-244		0.0085	[0.0079-0.0091] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
933	chr15	45683794	45683795	rs1145077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	13,359 South Asian ancestry individuals	NA	15q21.1	GATM	rs1145077-T	0.5636	2E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
933	chr15	45683794	45683795	rs1145077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	15q21.1	GATM	rs1145077-T	0.42	2E-16		1.0746	[1.0562-1.0933]	Affymetrix, Illumina [9585923] (imputed)	N
933	chr15	45686090	45686091	rs2433610	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	15q21.1	GATM	rs2433610-T	0.49	9E-12	(Creatine)	0.09	[NR] unit increase	Affymetrix [2341704] (imputed)	N
933	chr15	45693164	45693164	rs35335867	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary potassium to creatinine ratio	218,435 European ancestry individuals	109,178 European ancestry individuals	15q21.1	GATM	rs35335867-CT	0.2485	9E-14		0.024	[0.018-0.030] unit decrease	Affymetrix [19420026] (imputed)	N
933	chr15	45698792	45698793	rs2467853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	15q21.1		rs2467853-T	0.624835	2E-34		0.0448248	[0.038-0.052] unit decrease	NR [11722792] (imputed)	N
933	chr15	45698792	45698793	rs2467853	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q21.1	SPATA5L1	rs2467853-T	0.6209	3E-124	(EA)	0.0086	[0.0078-0.0094] unit increase	Affymetrix [NR] (imputed)	N
933	chr15	45698792	45698793	rs2467853	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	15q21.1	GATM, SPATA5L1	rs2467853-G	0.403359	1E-26		0.066702	[0.056-0.078] unit increase	Illumina [24961484] (imputed)	N
933	chr15	45698792	45698793	rs2467853	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	15q21.1	GATM	rs2467853-T	0.62	1E-42	(EA)	0.0126	[0.011-0.014] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr15	45698792	45698793	rs2467853	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	15q21.1	GATM	rs2467853-G	0.38	2E-11		1.1111112	[1.08-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr15	45698792	45698793	rs2467853	19430482	Kottgen A	2009-05-10	Nat Genet	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	15q21.1	SPATA5L1, GATM	rs2467853-G	0.38	6E-14	(eGFRcrea)	0.01	[0.009-0.017] ml/min/1.73m2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr15	45703823	45703824	rs1145074	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	15q21.1	SPATA5L1	rs1145074-T	0.745	2E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix [11709857] (imputed)	N
933	chr15	45712338	45712339	rs2486288	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	15q21.1		rs2486288-?	NR	2E-8		0.534341	[0.35-0.72] ml/min/1.73 m2 decrease	NR [43622178]	N
933	chr15	45712338	45712339	rs2486288	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q21.1	GATM	rs2486288-C	0.684	1E-33		0.628	[0.43-0.83] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
933	chr15	45712338	45712339	rs2486288	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	15q21.1	SPATA5L1, GATM	rs2486288-C	NR	5E-12		0.883	[0.64-1.13] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
933	chr15	45712338	45712339	rs2486288	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	15q21.1	SPATA5L1, GATM	rs2486288-C	0.38	2E-8	(EA)	0.923	[0.61-1.24] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
933	chr15	45713800	45713801	rs60476496	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	15q21.1	SPATA5L1	rs60476496-C	0.745	9E-16	(EA)	0.018	[0.014-0.022] unit increase	NR [12082474] (imputed)	N
933	chr15	45716159	45716159	rs36047699	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.1	SPATA5L1, C15orf48	rs36047699-G	0.366165	4E-12	(creatine)	0.175	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
933	chr15	45716424	45716425	rs2433601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q21.1		rs2433601-C	NR	8E-160		0.0515	[0.048-0.055] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
933	chr15	45719186	45719187	rs17536527	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		15q21.1	SPATA5L1	rs17536527-C	0.47	8E-10	(3-measure Model)	1.13	[0.78-1.48] unit decrease	Affymetrix [> 2500000] (imputed)	N
933	chr15	45720596	45720597	rs16943246	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	15q21.1	C15orf48	rs16943246-G	0.753	1E-8		0.01155	[0.0076-0.0155] unit increase	Affymetrix [11709857] (imputed)	N
933	chr15	45740211	45740212	rs9806724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs9806724-C	NR	8E-22		0.0314	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr15	45740211	45740212	rs9806724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs9806724-C	NR	6E-22		0.0315	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
934	chr15	45759340	45759341	rs12592862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs12592862-T	NR	2E-26		0.0634	[0.052-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr15	45759340	45759341	rs12592862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs12592862-T	NR	3E-28		0.0657	[0.054-0.077] unit increase	Affymetrix [9000000] (imputed)	N
934	chr15	45801034	45801035	rs950027	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	15q21.1	SLC30A4	rs950027-?	NR	5E-6	(Response)	0.04	[0.024-0.056] ng/dL decrease	Affymetrix [2543887] (imputed)	N
935	chr15	45934868	45934869	rs607541	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.1	SQRDL	rs607541-C	0.464	8E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
935	chr15	45951470	45951471	rs16946635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs16946635-C	NR	4E-13		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr15	45951470	45951471	rs16946635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.1	NR	rs16946635-C	NR	4E-14		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
935	chr15	45974868	45974869	rs115372813	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.1	SQRDL	rs115372813-?		4E-6				Illumina [4322238] (imputed)	N
935	chr15	45985070	45985071	rs12594515	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	15q21.1	SQRDL	rs12594515-C	0.69	5E-6		1.71	[0.98-2.44] kg increase	Affymetrix [2073674] (imputed)	N
935	chr15	45985070	45985071	rs12594515	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	15q21.1	SQRDL	rs12594515-C	0.69	7E-6		1.73	[0.98-2.48] cm increase	Affymetrix [2073674] (imputed)	N
935	chr15	45990211	45990212	rs563220122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.1		rs563220122-G	0.994654	3E-8		0.158856	[0.1-0.22] unit increase	NR [11722792] (imputed)	N
936	chr15	46036449	46036450	rs17554587	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	15q21.1	SQRDL	rs17554587-C	0.22	3E-6		0.85	[0.50-1.20] unit increase	Illumina [5918868] (imputed)	N
936	chr15	46078306	46078307	rs11633886	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q21.1	SQRDL, SEMA6D	rs11633886-C	0.467	5E-6		2.24	[1.57-3.19]	Illumina [1556551]	N
936	chr15	46122935	46122936	rs35053544	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	15q21.1	NR	rs35053544-C	0.076	6E-6		0.173	[0.099-0.247] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
936	chr15	46122935	46122936	rs35053544	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	15q21.1	NR	rs35053544-C	0.075	8E-7		0.189	[0.11-0.26] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
936	chr15	46132500	46132501	rs7182209	24954085	Della-Morte D	2014-06-14	J Neurol Sci	Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.	Carotid plaque burden (smoking interaction)	665 Hispanic individuals	264 Hispanic indivduals	15q21.1	SEMA6D, SQRDL	rs7182209-C	0.11	9E-6		0.5	[0.28-0.72] unit decrease	Affymetrix [722379]	N
937	chr15	46209026	46209027	rs12148088	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	15q21.1	intergenic	rs12148088-T		8E-6		92.15	[51.68-132.62] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
937	chr15	46212871	46212872	rs1918505	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.1	NR	rs1918505-?	NR	1E-7				Affymetrix [NR]	N
938	chr15	46316483	46316484	rs12902680	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	15q21.1	NR	rs12902680-T	0.381068	2E-8		5.63	z score decrease	NR [10847151] (imputed)	N
938	chr15	46316483	46316484	rs12902680	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q21.1	intergenic	rs12902680-T	0.61893	2E-7		5.212	z score decrease	Illumina [18485882] (imputed)	N
939	chr15	46427058	46427059	rs34019806	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.1	NR	rs34019806-?	NR	6E-7		5.002	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
939	chr15	46475345	46475346	rs77845309	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	15q21.1		rs77845309-A	NR	2E-6	(daytime resting)	2.083	[1.22-2.95] unit decrease	Affymetrix [7141204] (imputed)	N
939	chr15	46527676	46527677	rs12910424	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.1	NR	rs12910424-?	NR	1E-7		5.285	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
940	chr15	46540673	46540674	rs10431756	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	15q21.1	NR	rs10431756-A	0.6	2E-8		0.51	[0.33-0.69] unit increase	Affymetrix [39302896] (imputed)	N
940	chr15	46569465	46569466	rs6493206	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	15q21.1	intergenic	rs6493206-T	0.011	4E-6				Affymetrix [316934]	N
940	chr15	46584786	46584787	rs12439798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q21.1		rs12439798-T	NR	3E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
940	chr15	46584786	46584787	rs12439798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q21.1		rs12439798-T	NR	3E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
940	chr15	46584786	46584787	rs12439798	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.1	NA	rs12439798-T	0.438	1E-13		0.0127	[0.0094-0.016] unit increase	NR [~ 27400000] (imputed)	N
940	chr15	46585104	46585105	rs8038522	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q21.1	NA	rs8038522-T	0.4145	4E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
940	chr15	46586087	46586088	rs7183417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.1	NR	rs7183417-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
940	chr15	46586094	46586095	rs7162533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.1		rs7162533-?	NR	7E-14				NR [~ 8900000] (imputed)	N
940	chr15	46586904	46586905	rs17571096	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	15q21.1		rs17571096-T	NR	1E-6	(daytime resting)	2.16	[1.28-3.04] unit decrease	Affymetrix [7141204] (imputed)	N
940	chr15	46605276	46605277	rs2571249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q21.1	Intergenic	rs2571249-A	0.4747	2E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
940	chr15	46605276	46605277	rs2571249	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q21.1	Intergenic	rs2571249-A	0.4746	1E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
940	chr15	46639807	46639808	rs4775302	22130093	Nam RK	2011-12-01	Cancer Biol Ther	New variants at 10q26 and 15q21 are associated with aggressive prostate cancer in a genome-wide association study from a prostate biopsy screening cohort.	Prostate cancer	316 cases, 229 controls	55 Asian ancestry cases, 134 Asian ancestry controls, 1,382 European ancestry cases, 1,428 European ancestry controls, 184 Black cases, 127 Black controls, 42 cases, 87 controls	15q21.1	intergenic	rs4775302-?	NR	4E-8				Affymetrix [443816]	N
940	chr15	46640955	46640956	rs55881236	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q21.1	Intergenic	rs55881236-T	0.5768	1E-8	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
940	chr15	46640955	46640956	rs55881236	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q21.1	NR	rs55881236-T	NR	3E-8		5.515	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
940	chr15	46657591	46657592	rs7170955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.1		rs7170955-?	NR	3E-11				NR [~ 8900000] (imputed)	N
941	chr15	46666189	46666190	rs1484194	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	15q21.1	LOC100419366	rs1484194-?	0.68	2E-6		1.529052		Affymetrix, Illumina [14074516] (imputed)	N
941	chr15	46671605	46671606	rs12592256	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.1	PLDN	rs12592256-?	NR	5E-6	(lysine)	0.33427674	[0.19-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
941	chr15	46696636	46696637	rs62006538	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q21.1	NR	rs62006538-?	NR	3E-8				Illumina [7760689] (imputed)	N
941	chr15	46722434	46722435	rs4775429	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		15q21.1	SQRDL, SEMA6D	rs4775429-T	0.17	2E-8		40.23	[26.1-54.36] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
941	chr15	46722434	46722435	rs4775429	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		15q21.1	SQRDL, SEMA6D	rs4775429-T	0.08	2E-6	(Hispanic)	72.08	[42.64-101.52] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
942	chr15	46803839	46803840	rs11070529	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q21.1	SEMA6D	rs11070529-T	0.47	6E-10		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
942	chr15	46856927	46856928	rs4775602	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	15q21.1	Intergenic	rs4775602-C	0.16	3E-6		0.23	[0.13-0.32] unit increase	NR [~ 38000000] (imputed)	N
942	chr15	46897335	46897336	rs553240	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	15q21.1	NR	rs553240-?	NR	2E-6		0.2706	[0.16-0.38] unit decrease	Illumina [at least 560000] (imputed)	N
942	chr15	46922522	46922523	rs577788	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	15q21.1		rs577788-C	NR	8E-6		0.5291	unit increase	Illumina [NR] (imputed)	N
943	chr15	47029905	47029906	rs16958536	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	15q21.1	SEMA6D	rs16958536-?	0.22	4E-6	(Breast cancer, telangiectasia, multivariable analysis)	1.66		Illumina [2417493] (imputed)	N
944	chr15	47103951	47103952	rs62013915	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL32	5,348 Icelandic ancestry individuals	NA	15q21.1		rs62013915-T	0.01017	5E-14		0.170122	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
944	chr15	47142089	47142090	rs12899905	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.1	NA	rs12899905-T	0.2613	6E-10		0.0113	[0.0078-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
944	chr15	47174826	47174827	rs28802906	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.1	NR	rs28802906-T	0.01568	1E-8	(PBDC1)	0.02605	NR unit increase	Illumina [1671387] (imputed)	N
945	chr15	47239242	47239243	rs6493253	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.1	SLC24A5	rs6493253-?	NR	2E-6	(kynurenic acid)	0.16638751	[0.099-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
946	chr15	47352865	47352866	rs689695	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	15q21.1	intergenic	rs689695-G	0.07	8E-6	(female)	0.0605	[0.034-0.087] unit decrease	Illumina [6380737] (imputed)	N
946	chr15	47360366	47360367	rs111652004	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	15q21.1	NR	rs111652004-T	0.1	2E-20		0.83	[0.79-0.87]	Affymetrix, Illumina [15838848] (imputed)	N
946	chr15	47360366	47360367	rs111652004	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	15q21.1	SEMA6D	rs111652004-G	0.9	3E-16		1.1627907	[1.12-1.2]	Affymetrix, Illumina [6864281] (imputed)	N
946	chr15	47389793	47389794	rs1811762	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q21.1	SEMA6D	rs1811762-A	0.830402	2E-10		0.00405741	[0.0027-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
947	chr15	47483346	47483347	rs66992977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q21.1	Intergenic	rs66992977-A	0.4566	4E-8	(MTAG)	0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
947	chr15	47502350	47502351	rs12914084	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q21.1	NR	rs12914084-C	0.391782826277472	3E-8		0.011118742	[0.0072-0.015] unit increase	NR [NR]	N
947	chr15	47503468	47503469	rs12903078	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	15q21.1	SEMA6D	rs12903078-A	0.406166	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
947	chr15	47504741	47504742	rs12442330	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q21.1	SEMA6D	rs12442330-C	0.4499	3E-10		0.012755036	[0.0088-0.0167] unit increase	Affymetrix [up to 18485882] (imputed)	N
947	chr15	47504741	47504742	rs12442330	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q21.1	NR	rs12442330-T	NR	2E-10		6.383	z score increase	Affymetrix [10847151] (imputed)	N
947	chr15	47513252	47513253	rs6493265	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs6493265-T	0.3915	2E-17		0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
947	chr15	47515394	47515395	rs2860049	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q21.1	NA	rs2860049-T		2E-15		0.0149408	[0.011-0.019] unit increase	Illumina [13288253] (imputed)	N
947	chr15	47515394	47515395	rs2860049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.1	Intergenic	rs2860049-T	0.3861	2E-15	(MTAG)	0.0107	[0.0082-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
947	chr15	47518371	47518372	rs11853760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs11853760-A	0.3856	5E-13	(conditional-joint)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
947	chr15	47518806	47518807	rs1563245	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	15q21.1	SEMA6D	rs1563245-T	NR	4E-8		0.0095371	[0.0061-0.013] unit increase	Affymetrix [18485882] (imputed)	N
947	chr15	47518806	47518807	rs1563245	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q21.1	NR	rs1563245-G	0.399769420538171	1E-8		0.0053546773	[0.0035-0.0072] unit increase	NR [NR]	N
947	chr15	47518806	47518807	rs1563245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	15q21.1		rs1563245-?	NR	5E-10				NR [~ 8900000] (imputed)	N
947	chr15	47518806	47518807	rs1563245	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q21.1	SEMA6D	rs1563245-T	0.5972500000000001	5E-11		6.567	z score decrease	Illumina [18485882] (imputed)	N
947	chr15	47551053	47551054	rs1454836	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	15q21.1	NR	rs1454836-T	0.6006929999999999	3E-8		0.0166598	[0.011-0.023] unit increase	Affymetrix [16577424] (imputed)	N
947	chr15	47557517	47557518	rs72731766	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	15q21.1	NR	rs72731766-T	NR	8E-6		1.437	NR	Illumina [at least 560000] (imputed)	N
947	chr15	47563116	47563117	rs1813760	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q21.1	SEMA6D	rs1813760-?	NR	5E-13		0.014986361	[0.011-0.019] unit increase	NR [7306098]	N
947	chr15	47577450	47577451	rs66759488	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q21.1	SEMA6D	rs66759488-A	0.361826324	3E-8		1.0702693	[1.044914401-1.096239489]	Illumina [10439017] (imputed)	N
947	chr15	47579003	47579004	rs1378214	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q21.1		rs1378214-T	0.3825	4E-10		49.78272	z score increase	NR [6814003]	N
947	chr15	47579003	47579004	rs1378214	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q21.1	NR	rs1378214-T	0.3723	2E-11		0.015454802	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
948	chr15	47613592	47613593	rs6493271	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q21.1	NR	rs6493271-T	0.8276	4E-9		0.017300112	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
948	chr15	47642885	47642886	rs1486900	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q21.1	SEMA6D	rs1486900-T	0.1747	3E-9		0.015755525	[0.011-0.021] unit increase	Affymetrix [11514654] (imputed)	N
948	chr15	47643794	47643795	rs557899	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	15q21.1	SEMA6D	rs557899-A	0.26	3E-13		0.0157	[0.0098-0.0216] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
948	chr15	47644962	47644963	rs665751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.1		rs665751-?	NR	5E-11				NR [~ 8900000] (imputed)	N
948	chr15	47645173	47645174	rs73403005	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	15q21.1	NR	rs73403005-A	0.8414	6E-9		5.815	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
948	chr15	47647754	47647755	rs591143	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	15q21.1	NR	rs591143-T	0.592	3E-18		0.0136814	[0.011-0.017] unit decrease	NR [9732723] (imputed)	N
948	chr15	47647754	47647755	rs591143	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	15q21.1	NR	rs591143-T	0.592	1E-9		0.0243296	[0.017-0.032] unit decrease	NR [~ 10000000] (imputed)	N
948	chr15	47649593	47649598	rs202117383	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	15q21.1	SEMA6D	rs202117383-C	NR	7E-6		0.115676	[0.067-0.164] unit decrease	Illumina [> 6200000] (imputed)	N
948	chr15	47651361	47651362	rs4774495	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	15q21.1	NR	rs4774495-A		5E-8				Illumina [458865]	N
948	chr15	47660193	47660194	rs74011415	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	15q21.1	SEMA6D	rs74011415-G	0.881	1E-8		0.0192	[0.013-0.026] unit decrease	Affymetrix [11535925] (imputed)	N
948	chr15	47660193	47660194	rs74011415	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	15q21.1	SEMA6D	rs74011415-G	NR	7E-6			[NR]	Affymetrix [11535925] (imputed)	N
948	chr15	47665184	47665185	rs61998565	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q21.1	SEMA6D	rs61998565-G	0.85496	1E-9		0.015964	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
948	chr15	47665184	47665185	rs61998565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.1		rs61998565-?	NR	3E-11				NR [~ 8900000] (imputed)	N
948	chr15	47665184	47665185	rs61998565	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.1		rs61998565-?	NR	5E-10		0.0180872	[0.012-0.024] unit increase	Affymetrix [20259828] (imputed)	N
948	chr15	47666832	47666833	rs281248	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Hip bone mineral content accrual during adolescent growth spurt	125 women, 133 men	NA	15q21.1	NR	rs281248-A	0.32	6E-6	(Male)	0.8	[0.47-1.13] g increase	Illumina [509842]	N
948	chr15	47675654	47675655	rs12910916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	15q21.1		rs12910916-?	NR	7E-17				NR [~ 8900000] (imputed)	N
948	chr15	47675654	47675655	rs12910916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q21.1	Intergenic	rs12910916-T	0.2123	2E-8	(MTAG)	0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
948	chr15	47675654	47675655	rs12910916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.1	Intergenic	rs12910916-T	0.2118	1E-14	(MTAG)	0.0123	[0.0092-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
948	chr15	47676488	47676489	rs6493274	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	15q21.1	NR	rs6493274-A	0.7881	8E-9		0.02880433	[0.019-0.039] unit decrease	NR [NR]	N
948	chr15	47676578	47676579	rs6493275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs6493275-A	0.7885	3E-14		0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
948	chr15	47680800	47680801	rs34794623	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q21.1	NR	rs34794623-A	0.213	2E-32		0.0156017	[0.013-0.018] unit increase	NR [9732723] (imputed)	N
948	chr15	47680814	47680815	rs35175834	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	15q21.1		rs35175834-G	0.788	5E-22		0.024	[0.02-0.028] unit decrease	Affymetrix [up to 90000000] (imputed)	N
948	chr15	47681551	47681552	rs281287	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	15q21.1	SEMA6D	rs281287-G		4E-14		1.028	[NR]	Affymetrix [up to 79000000] (imputed)	N
948	chr15	47681702	47681703	rs281288	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	15q21.1	NR	rs281288-T	0.3493	2E-6		0.0192	[0.011-0.027] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
948	chr15	47684279	47684280	rs12907546	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q21.1		rs12907546-G	0.796	1E-31		0.017	[0.015-0.019] unit decrease	NR [NR] (imputed)	N
948	chr15	47684935	47684936	rs34488670	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	15q21.1	NR	rs34488670-C	0.2113	5E-13		1.0193679	[1.01-1.02]	NR [8098588] (imputed)	N
948	chr15	47684935	47684936	rs34488670	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	15q21.1	SEMA6D	rs34488670-T	0.7885	8E-12		0.021578157	[0.015-0.028] unit decrease	Affymetrix [~ 11515000] (imputed)	N
948	chr15	47684935	47684936	rs34488670	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	15q21.1	SEMA6D	rs34488670-T	0.7887	1E-8		0.016623866	[0.011-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
948	chr15	47684935	47684936	rs34488670	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q21.1	NR	rs34488670-C	0.217	4E-18		0.0153569	[0.012-0.019] unit decrease	NR [9732723] (imputed)	N
948	chr15	47685009	47685010	rs281296	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	15q21.1	NR	rs281296-A	0.3568	2E-9		0.012968086	[0.0087-0.0172] unit increase	Affymetrix [10613246] (imputed)	N
948	chr15	47685009	47685010	rs281296	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q21.1	NR	rs281296-A	0.357	2E-20		0.024689237	[0.019-0.03] unit increase	NR [~ 10000000] (imputed)	N
948	chr15	47685058	47685059	rs1025143	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	15q21.1	NR	rs1025143-C	0.377	4E-9		0.0104990015	[0.007-0.014] unit increase	Affymetrix [NR] (imputed)	N
948	chr15	47685058	47685059	rs1025143	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	15q21.1	NR	rs1025143-C	0.357	1E-10		0.00890796	[0.0062-0.0116] unit increase	NR [~ 9732723] (imputed)	N
948	chr15	47685503	47685504	rs281297	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	15q21.1	NR	rs281297-?		7E-9				NR [520857]	N
948	chr15	47686661	47686662	rs281302	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	15q21.1	ENSG00000259221	rs281302-?	NR	2E-8		5.609	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
948	chr15	47686661	47686662	rs281302	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q21.1	NR	rs281302-A	0.5629	3E-9		0.013341426	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
948	chr15	47687790	47687791	rs1908796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q21.1		rs1908796-C	NR	4E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
948	chr15	47687834	47687835	rs1908795	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q21.1	SEMA6D, CTD-2050N2.1	rs1908795-A	0.4255	2E-8		0.011531453	[0.0075-0.0155] unit decrease	Affymetrix [up to 18485882] (imputed)	N
948	chr15	47689132	47689133	rs281303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs281303-A	0.3263	1E-9	(conditional-joint)	0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
948	chr15	47692653	47692654	rs117319730	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	15q21.1	NR	rs117319730-C	NR	3E-8		5.539	z score decrease	Affymetrix [10847151] (imputed)	N
948	chr15	47702441	47702442	rs188133	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	15q21.1	intergenic	rs188133-A	0.683	9E-6		0.021	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
948	chr15	47708405	47708406	rs16959433	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	15q21.1	NR	rs16959433-?	NR	2E-6		0.0081988	[0.0048-0.0116] unit increase	Affymetrix [805426] (imputed)	N
949	chr15	47714360	47714364	rs200254927	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	15q21.1	SEMA6D	rs200254927-?	0.5229	4E-7		0.048	[0.030-0.067] unit increase	Illumina [11914280] (imputed)	N
949	chr15	47716036	47716037	rs166835	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	15q21.1	NR	rs166835-?		3E-9		0.0131356	[0.0088-0.0175] unit increase	Affymetrix [19400418] (imputed)	N
949	chr15	47717162	47717163	rs72733826	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	15q21.1	NR	rs72733826-?		3E-9				NR [520857]	N
949	chr15	47717162	47717163	rs72733826	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	15q21.1	NR	rs72733826-?		3E-9				NR [11140414]	N
949	chr15	47717162	47717163	rs72733826	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	15q21.1	NR	rs72733826-A	NR	3E-9		5.911	z score increase	Affymetrix [10847151] (imputed)	N
949	chr15	47718454	47718455	rs281229	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	15q21.1	SEMA6D	rs281229-?	NR	3E-7				Illumina [9143600] (imputed)	N
949	chr15	47724271	47724272	rs281238	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	15q21.1	NR	rs281238-?		8E-7				Illumina [up to 6969139] (imputed)	N
949	chr15	47724271	47724272	rs281238	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	15q21.1	SEMA6D	rs281238-T	0.422748571	1E-7		0.156257	[0.098-0.214] unit increase	Illumina [6969139] (imputed)	N
949	chr15	47730869	47730870	rs8039398	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	15q21.1		rs8039398-?	NR	1E-8		0.013	NR unit decrease	NR [5568121] (imputed)	N
949	chr15	47730869	47730870	rs8039398	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	15q21.1	SEMA6D	rs8039398-C	NR	4E-11		1.0752687	[1.05-1.1]	NR [5009020] (imputed)	N
949	chr15	47730869	47730870	rs8039398	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	15q21.1	SEMA6D	rs8039398-T	NR	3E-8	(males)	0.094	[0.061-0.127] unit decrease	Illumina [7531543] (imputed)	N
949	chr15	47731244	47731245	rs406196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q21.1		rs406196-?	NR	2E-8				NR [~ 8900000] (imputed)	N
949	chr15	47738062	47738063	rs1559677	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q21.1	SEMA6D	rs1559677-G	0.36	3E-8		0.013	[0.0091-0.0169] unit increase	Illumina [6108953] (imputed)	N
949	chr15	47739443	47739444	rs6493279	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	15q21.1		rs6493279-?	NR	3E-8		0.0183	NR unit increase	NR [4425810] (imputed)	N
949	chr15	47749433	47749434	rs11857221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q21.1		rs11857221-A	NR	9E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
949	chr15	47754017	47754018	rs281324	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	15q21.1	NR	rs281324-?		3E-8				NR [8028859]	N
949	chr15	47754017	47754018	rs281324	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	15q21.1	NR	rs281324-?	NR	7E-7		1.0752687	[1.04-1.11]	Illumina [~ 1092418] (imputed)	N
949	chr15	47754026	47754027	rs281323	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or putamen volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 11,646 European ancestry individuals	NA	15q21.1	SEMA6D	rs281323-A	NR	4E-9		5.9	NR z score increase	NR [up to 8609826] (imputed)	N
949	chr15	47754026	47754027	rs281323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q21.1		rs281323-?	NR	1E-8				NR [~ 8900000] (imputed)	N
949	chr15	47756081	47756082	rs1981919	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q21.1	SEMA6D	rs1981919-A	0.1054	4E-9		0.019198174	[0.013-0.026] unit increase	Affymetrix [11514654] (imputed)	N
949	chr15	47764844	47764845	rs11855468	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	15q21.1	NR	rs11855468-A	0.952	1E-8		0.0247	[0.016-0.033] unit increase	Illumina [NR] (imputed)	N
949	chr15	47764844	47764845	rs11855468	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	15q21.1	NR	rs11855468-A	0.9521	3E-9		0.0299	[0.02-0.04] unit decrease	Illumina [NR] (imputed)	N
949	chr15	47769423	47769424	rs281320	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or intracranial volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 24,024 European ancestry individuals	NA	15q21.1	SEMA6D	rs281320-T	NR	1E-10		6.46553	NR z score decrease	NR [up to 9186920] (imputed)	N
949	chr15	47787969	47787970	rs12592235	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	15q21.1		rs12592235-?	NR	1E-8		0.0197	NR unit decrease	NR [4428082] (imputed)	N
949	chr15	47800512	47800513	rs1656614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs1656614-C	0.314	7E-16		0.0122	[0.0093-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
949	chr15	47800512	47800513	rs1656614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.1	Intergenic	rs1656614-C	0.314	3E-13	(MTAG)	0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
949	chr15	47806011	47806012	rs1610098	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	15q21.1	NR	rs1610098-?	0.37	8E-7		1.1111112	[1.06-1.15]	Illumina [~ 1072558] (imputed)	N
949	chr15	47839784	47839785	rs8027136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q21.1		rs8027136-T	NR	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
950	chr15	47867761	47867762	rs28533540	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	15q21.1	SEMA6D	rs28533540-?	NR	1E-10		0.00254895	[-0.00229-0.00739] unit increase	Affymetrix [25921788] (imputed)	N
950	chr15	47867761	47867762	rs28533540	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	15q21.1	SEMA6D	rs28533540-?	NR	1E-10		0.0158196	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
950	chr15	47870185	47870186	rs1865647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q21.1		rs1865647-T	NR	3E-9		0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
950	chr15	47873171	47873172	rs9646181	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	15q21.1	SEMA6D	rs9646181-T		5E-10		0.946	[NR]	Affymetrix [~ 79000000] (imputed)	N
950	chr15	47879626	47879627	rs12900158	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q21.1	SEMA6D	rs12900158-C	0.955	5E-6	(EA, men)	0.083	[0.047-0.118] kg/m2 increase	Affymetrix, Illumina [2550021]	N
950	chr15	47890349	47890350	rs1898110	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	15q21.1	NR	rs1898110-C		2E-6				Illumina [458865]	N
950	chr15	47892297	47892298	rs1898111	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.1		rs1898111-A	0.8245	5E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
950	chr15	47892297	47892298	rs1898111	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	15q21.1	SEMA6D	rs1898111-A	0.837	8E-6	(OCPD)	1.15	[1.08-1.22]	Illumina [283744]	N
950	chr15	47895901	47895902	rs1435757	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	15q21.1	SEMA6D	rs1435757-C	0.474065	3E-14		0.0238142	[0.018-0.03] unit decrease	NR [16426330] (imputed)	N
950	chr15	47896549	47896550	rs16959783	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	15q21.1		rs16959783-?	NR	2E-8				NR [7857346] (imputed)	N
950	chr15	47896549	47896550	rs16959783	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	15q21.1	ENSG00000259588	rs16959783-?	NR	2E-8		0.0097198	[0.0063-0.0131] unit increase	Affymetrix [805426] (imputed)	N
950	chr15	47901736	47901737	rs10152500	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.1	SEMA6D	rs10152500-?		5E-7				Illumina [4322238] (imputed)	N
950	chr15	47901736	47901737	rs10152500	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.1	SEMA6D	rs10152500-?		1E-6				Illumina [4322238] (imputed)	N
950	chr15	47915303	47915304	rs8025708	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.1	NR	rs8025708-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
950	chr15	47915451	47915452	rs35471498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.1		rs35471498-?	NR	2E-8				NR [~ 8900000] (imputed)	N
950	chr15	47916617	47916618	rs76520838	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q21.1	SEMA6D	rs76520838-C	0.966576	2E-9		0.0232182	[0.016-0.031] unit decrease	Affymetrix [12370749]	N
950	chr15	47916871	47916872	rs1529883	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q21.1	SEMA6D	rs1529883-C	0.3453	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
950	chr15	47921337	47921338	rs2573566	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.1	NR	rs2573566-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
950	chr15	47923519	47923520	rs10220751	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	15q21.1	SEMA6D	rs10220751-?		8E-12				Illumina [9499600] (imputed)	N
950	chr15	47923519	47923520	rs10220751	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	15q21.1	SEMA6D	rs10220751-G	0.405	3E-6	(BMI)	0.0115	[0.0067-0.0163] unit decrease	Illumina [9499600] (imputed)	N
950	chr15	47932452	47932453	rs7163692	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q21.1	SEMA6D	rs7163692-C	0.649385	2E-8		0.00831115	[0.0054-0.0112] unit increase	Affymetrix [12370749]	N
950	chr15	47935784	47935785	rs1435742	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q21.1	NR	rs1435742-G	0.447	2E-8		0.0124702	[0.0081-0.0168] unit increase	NR [9732723] (imputed)	N
950	chr15	47935842	47935843	rs1435741	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	15q21.1	SEMA6D	rs1435741-A	0.43	1E-13		0.0171	[0.013-0.022] unit increase	Illumina [~ 250000] (imputed)	N
950	chr15	47935842	47935843	rs1435741	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q21.1	SEMA6D	rs1435741-A	0.432	6E-15		0.015804287	[0.012-0.02] unit increase	Affymetrix [11514654] (imputed)	N
950	chr15	47935842	47935843	rs1435741	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q21.1	SEMA6D	rs1435741-A	0.433	3E-9		0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
950	chr15	47935842	47935843	rs1435741	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q21.1	NR	rs1435741-A	0.432951	1E-12	(Conditioned on chr15:47685010)	0.018309139	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
950	chr15	47936362	47936363	rs17326895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.1		rs17326895-?	NR	3E-8				NR [~ 8900000] (imputed)	N
950	chr15	47940811	47940812	rs9888736	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q21.1	NR	rs9888736-G	0.49	6E-8	(Japanese, Male)	0.025	[0.015-0.035] unit decrease	Illumina [6108953] (imputed)	N
950	chr15	47944781	47944782	rs1369639	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	15q21.1	SEMA6D	rs1369639-T	NR	7E-6		0.220017	[0.12-0.32] unit decrease	Illumina [at least 950000] (imputed)	N
950	chr15	47947290	47947291	rs12912380	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.1	NA	rs12912380-T	0.1131	2E-10		0.0171	[0.012-0.022] unit decrease	NR [~ 27400000] (imputed)	N
950	chr15	47950094	47950095	rs2573570	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.1	NR	rs2573570-?	NR	3E-6		4.685	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
950	chr15	47966751	47966752	rs869730	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	15q21.1	SLC24A5	rs869730-A	0.3943	2E-8		0.011156664	[0.0073-0.015] unit increase	Illumina [9339358] (imputed)	N
950	chr15	47971450	47971451	rs12902636	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q21.1		rs12902636-C	0.489	9E-24		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
950	chr15	47971450	47971451	rs12902636	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q21.1	NR	rs12902636-T	0.498	3E-28		0.0119598	[0.0098-0.0141] unit decrease	NR [9732723] (imputed)	N
951	chr15	47989798	47989799	rs8038326	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	15q21.1	NR	rs8038326-A	NR	1E-10		0.906	unit increase	Affymetrix [14661600] (imputed)	N
951	chr15	47994053	47994054	rs8032760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q21.1		rs8032760-?	NR	4E-8				NR [~ 8900000] (imputed)	N
951	chr15	47995104	47995105	rs1224653	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs1224653-C	NR	2E-7		0.329455	[0.21-0.45] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
951	chr15	47998629	47998630	rs180709182	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.1	SEMA6D	rs180709182-C	1.0	5E-7	(AA)	0.602	unit increase	Illumina [NR] (imputed)	N
951	chr15	48002699	48002700	rs16959955	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	15q21.1	SEMA6D	rs16959955-?	NR	1E-8		0.0168573	[0.011-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
951	chr15	48005469	48005470	rs8028579	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q21.1	SEMA6D	rs8028579-T	0.11	7E-6	(AA)	0.3	[0.16-0.44] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
951	chr15	48006723	48006724	rs12910903	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q21.1	NR	rs12910903-G	0.40921690793255	5E-8		0.005094467	[0.0033-0.0069] unit decrease	NR [NR]	N
951	chr15	48006723	48006724	rs12910903	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q21.1	NR	rs12910903-G	0.40921690793255	5E-8		0.0081071425	[0.0052-0.011] unit decrease	NR [NR]	N
951	chr15	48009262	48009263	rs59986227	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	15q21.1		rs59986227-C	0.7456	5E-9		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
951	chr15	48009262	48009263	rs59986227	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q21.1	SEMA6D	rs59986227-G	0.25070000000000003	1E-11		1.0311761		Affymetrix [11880941] (imputed)	N
951	chr15	48009262	48009263	rs59986227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	15q21.1		rs59986227-?	NR	5E-8				NR [~ 8900000] (imputed)	N
951	chr15	48012425	48012425	rs75554719	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	15q21.1	SEMA6D	rs75554719-?	NR	2E-9		0.00239863	[-0.00341-0.00821] unit increase	Affymetrix [25921788] (imputed)	N
951	chr15	48012425	48012425	rs75554719	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	15q21.1	SEMA6D	rs75554719-?	NR	2E-9		0.0176916	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
951	chr15	48014564	48014565	rs12898855	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q21.1	NR	rs12898855-C	NR	2E-9		6.03	z score decrease	Affymetrix [10847151] (imputed)	N
951	chr15	48027203	48027204	rs17388803	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	15q21.1	SEMA6D	rs17388803-C	NR	7E-10		1.054		NR [14661600] (imputed)	N
951	chr15	48033367	48033368	rs3985863	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA		NR	rs3985863-?	NR	8E-38				Affymetrix [NR]	N
951	chr15	48048565	48048566	rs192229215	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.1	SEMA6D	rs192229215-A	1.0	1E-6	(AA)	0.634	unit increase	Illumina [NR] (imputed)	N
951	chr15	48050576	48050577	rs13329140	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	15q21.1		rs13329140-A	0.2359	8E-11		0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
951	chr15	48053228	48053229	rs501916	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	15q21.1	SEMA6D	rs501916-?		5E-7		1.512222	[1.29-1.78]	Illumina [2612357]	N
951	chr15	48053228	48053229	rs501916	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Ulcerative colitis	269 Polish ancestry child cases, 259 Polish ancestry adult cases, 582 Polish ancestry controls	121 Polish ancestry child cases, 85 Polish ancestry adult cases, 352 Polish ancestry controls	15q21.1	SEMA6D	rs501916-?		4E-10	(Children)	1.8129687	[1.51-2.18]	Illumina [2612357]	N
951	chr15	48053228	48053229	rs501916	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	15q21.1	SEMA6D	rs501916-?	NR	4E-6		1.3860564	[1.20-1.59]	Illumina [2612357]	N
951	chr15	48053228	48053229	rs501916	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	15q21.1	SEMA6D	rs501916-?	NR	1E-8	(Children)	1.5665871	[1.34-1.83]	Illumina [2612357]	N
951	chr15	48073423	48073424	rs1439321	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q21.1	NR	rs1439321-A	NR	1E-8		5.667	z score increase	Affymetrix [10847151] (imputed)	N
951	chr15	48077924	48077925	rs4775714	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	15q21.1	NR	rs4775714-?	NR	6E-7		0.0087445	[0.0053-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
953	chr15	48304109	48304110	rs1453858	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs1453858-A	NR	1E-15		0.455591	[0.34-0.57] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
953	chr15	48319732	48319733	rs16960505	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.1	NR	rs16960505-?	NR	7E-6				Affymetrix [NR]	N
954	chr15	48392164	48392165	rs1834640	17999355	Stokowski RP	2007-10-15	Am J Hum Genet	A genomewide association study of skin pigmentation in a South Asian population.	Skin pigmentation	363 South Asian ancestry low maxL* individuals, 374 South Asian ancestry high maxL* individuals	116 South Asian ancestry low maxL* individuals, 115 South Asian ancestry high maxL* individuals	15q21.1	SLC24A5	rs1834640-G	0.08	1E-50		12.5	[8.33-20.0]	Perlegen [1502205]	N
954	chr15	48394280	48394281	rs140834178	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.1	NR	rs140834178-?	NR	4E-6		4.633	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
954	chr15	48400198	48400199	rs2675345	33600456	Batai K	2021-02-18	PLoS Genet	Genetic loci associated with skin pigmentation in African Americans and their effects on vitamin D deficiency.	Skin reflectance (Melanin index)	395 African American individuals	681 African American individuals	15q21.1	SLC24A5	rs2675345-A	0.234	4E-30		0.042	NR unit decrease	Affymetrix, Illumina [7169107] (imputed)	N
954	chr15	48400198	48400199	rs2675345	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	15q21.1	SLC24A5	rs2675345-A	0.952525	1E-9				Affymetrix, Illumina [NR] (imputed)	N
954	chr15	48400198	48400199	rs2675345	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q21.1	SLC24A5, MYEF2, DUT	rs2675345-G	NR	3E-14		3.89	[2.89-4.89] unit increase	Affymetrix [14000000] (imputed)	N
954	chr15	48426483	48426484	rs1426654	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	15q21.1		rs1426654-G	0.001086	3E-9		0.36	[0.24-0.48] unit increase	NR [11842647] (imputed)	N
954	chr15	48426483	48426484	rs1426654	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	15q21.1		rs1426654-G	0.001373	3E-9		0.58	[0.39-0.77] unit decrease	NR [11842647] (imputed)	N
954	chr15	48426483	48426484	rs1426654	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	15q21.1		rs1426654-G	0.001229	2E-10		0.98	[0.68-1.28] unit increase	NR [11842647] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	15q21.1		rs1426654-G	0.102	3E-26		0.684	[0.56-0.81] unit increase	Illumina [11532091] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 3)	6,169 Latin American individuals	NA	15q21.1		rs1426654-?	NR	2E-8				Illumina [8703729] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip thickness 2)	6,169 Latin American individuals	NA	15q21.1		rs1426654-?	NR	3E-6				Illumina [8703729] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lower lip thickness 1)	6,169 Latin American individuals	NA	15q21.1		rs1426654-?	NR	3E-6				Illumina [8703729] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (lip thickness 1)	6,169 Latin American individuals	NA	15q21.1		rs1426654-?	NR	4E-6				Illumina [8703729] (imputed)	N
954	chr15	48426483	48426484	rs1426654	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	15q21.1		rs1426654-?	NR	7E-8				Illumina [8703729] (imputed)	N
954	chr15	48426483	48426484	rs1426654	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	762 Cuban ancestry individuals	NA	15q21.1	SLC24A5	rs1426654-?	0.288485	3E-7		0.259952	[0.16-0.36] unit increase	NR [292549] (imputed)	N
954	chr15	48426483	48426484	rs1426654	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	15q21.1	SLC24A5	rs1426654-G	NR	6E-39		0.403	[0.34-0.46] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs1426654-G	NR	3E-39		0.704742	[0.6-0.81] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		15q21.1	SLC24A5	rs1426654-G	0.15	8E-9		0.594	[0.4-0.79] unit decrease	Illumina [640625] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		15q21.1	SLC24A5	rs1426654-G	0.14976	2E-6		0.49289	[0.29-0.69] unit decrease	Illumina [640625] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	4E-150				Illumina [181139] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	2E-130				Illumina [8896142] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Hair color	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	1E-18				Illumina [8896142] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	6E-45				Illumina [8896142] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (brightness)	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	8E-50				Illumina [8896142] (imputed)	N
954	chr15	48426483	48426484	rs1426654	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color	6,236 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	1E-26				Illumina [8896142] (imputed)	N
954	chr15	48426483	48426484	rs1426654	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Skin pigmentation	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	15q21.1	SLC24A5	rs1426654-?	0.40	1E-8		3.58	NR unit decrease	Illumina [at least 241929] (imputed)	N
954	chr15	48426483	48426484	rs1426654	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	15q21.1	SLC24A5	rs1426654-?	NR	1E-18				Illumina [9143600] (imputed)	N
954	chr15	48426483	48426484	rs1426654	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index	2,763 Bangladeshi ancestry females, 2,591 Bangladeshi ancestry males	NA	15q21.1	SLC24A5	rs1426654-A	0.511	4E-7	(females)	0.484	[0.30-0.67] kg/m2 increase	Illumina [1208102] (imputed)	N
954	chr15	48426483	48426484	rs1426654	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index	2,763 Bangladeshi ancestry females, 2,591 Bangladeshi ancestry males	NA	15q21.1	SLC24A5	rs1426654-A	0.51	8E-7		0.325	[0.20-0.45] kg/m2 increase	Illumina [1208102] (imputed)	N
954	chr15	48433493	48433494	rs2470102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q21.1		rs2470102-?	NR	7E-13				NR [~ 8900000] (imputed)	N
954	chr15	48433493	48433494	rs2470102	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Skin pigmentation	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	15q21.1	SLC24A5	rs2470102-?	NR	4E-12		3.4	NR unit decrease	Illumina [at least 241929] (imputed)	N
954	chr15	48433493	48433494	rs2470102	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q21.1	NR	rs2470102-G	NR	6E-8	(Hispanic)	3.31	[2.14-4.47] unit increase	Affymetrix [14000000] (imputed)	N
955	chr15	48500262	48500263	rs34819316	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	15q21.1		rs34819316-?	NR	3E-8		0.0820401	[0.054-0.11] unit increase	NR [9800000] (imputed)	N
955	chr15	48508399	48508400	rs1878186	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	15q21.1	SLC12A1	rs1878186-C	0.047	1E-7		1.82	[1.45-2.28]	Illumina [580483] (imputed)	N
955	chr15	48514308	48514309	rs9920281	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	15q21.1	NR	rs9920281-G	NR	5E-6		0.06465	[0.037-0.093] unit decrease	Illumina [~ 540852]	N
955	chr15	48539025	48539026	rs11636073	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs11636073-T	NR	8E-9		0.354282	[0.23-0.47] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
955	chr15	48546726	48546727	rs12593807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q21.1	SLC12A1	rs12593807-C	0.134638	8E-12		0.022342848	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr15	48546726	48546727	rs12593807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.1	NR	rs12593807-C	0.193206	5E-13				Affymetrix, Illumina [23472807] (imputed)	N
955	chr15	48546726	48546727	rs12593807	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q21.1	NR	rs12593807-C	0.135636	8E-14		0.020904	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
955	chr15	48558642	48558642	rs67628277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q21.1	SLC12A1	rs67628277-CT	0.83034	9E-11		0.020884072	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
955	chr15	48597513	48597514	rs964611	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	15q21.1	SLC12A1	rs964611-A		8E-6		0.15	[0.09-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr15	48633152	48633153	rs11637235	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	15q21.1	DUT	rs11637235-?	0.28	3E-6	(Adiponectin)			Illumina [496032]	N
956	chr15	48657422	48657423	rs11636311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q21.1		rs11636311-A	NR	9E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
956	chr15	48661441	48661442	rs17430375	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs17430375-C	NR	6E-8		0.898858	[0.57-1.22] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
956	chr15	48670240	48670241	rs117540572	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q21.1	DUT	rs117540572-G	0.939375	2E-11	(DUT, 9995_6_3)	0.33930123	[0.24-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
956	chr15	48675226	48675227	rs919129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q21.1		rs919129-A	0.851998	3E-9		0.018480077	[0.012-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr15	48676791	48676792	rs76539098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DUT	5,367 Icelandic ancestry individuals	NA	15q21.1		rs76539098-G	0.04915	6E-19		0.385997	[0.3-0.47] unit increase	Illumina [7506463] (imputed)	N
956	chr15	48684957	48684958	rs12592845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q21.1	NR	rs12592845-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
956	chr15	48684957	48684958	rs12592845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.1		rs12592845-?	NR	3E-38				NR [~ 8900000] (imputed)	N
956	chr15	48685100	48685101	rs1820489	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q21.1	FBN1	rs1820489-C	NR	4E-13		0.0385174	[0.028-0.049] unit decrease	Affymetrix [321114] (imputed)	N
956	chr15	48686174	48686175	rs10519170	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.1	DUT, FBN1	rs10519170-?	NR	4E-23		0.0326236	[0.026-0.039] unit decrease	Illumina [27896057] (imputed)	N
956	chr15	48692459	48692460	rs7171330	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q21.1		rs7171330-T	0.26	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
956	chr15	48694210	48694211	rs17352842	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	15q21.1	NR	rs17352842-?	NR	3E-6		0.0213	[0.012-0.03] unit decrease	Illumina [~ 7800000] (imputed)	N
956	chr15	48694210	48694211	rs17352842	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	15q21.1	FBN1	rs17352842-T	0.1939	9E-6		0.1183	[0.066-0.17] unit decrease	Illumina [up to 38043574] (imputed)	N
956	chr15	48699485	48699486	rs16960886	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q21.1	FBN1	rs16960886-A	0.1036	7E-6		0.0668	[0.038-0.096] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
956	chr15	48701611	48701612	rs4775760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.1	FBN1	rs4775760-A	NR	2E-8		0.0190181	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
956	chr15	48703822	48703823	rs8023401	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q21.1	FBN1	rs8023401-G	0.87	3E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
956	chr15	48703822	48703823	rs8023401	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q21.1	FBN1	rs8023401-G	0.87	2E-9	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
956	chr15	48716852	48716853	rs2015637	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	15q21.1	FBN1	rs2015637-C	0.1	2E-9		1.79	[1.48-2.17]	Illumina [~ 5000000] (imputed)	N
956	chr15	48723508	48723509	rs4775761	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q21.1	FBN1	rs4775761-?	NR	3E-10		0.656	[0.45-0.86] unit decrease	Affymetrix [11100000] (imputed)	N
956	chr15	48744004	48744005	rs4775762	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.1		rs4775762-T	0.23	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
956	chr15	48744004	48744005	rs4775762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q21.1		rs4775762-C	NR	5E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
956	chr15	48748643	48748644	rs76610457	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.1	FBN1	rs76610457-?	NR	2E-9		0.02155082	[0.015-0.029] unit increase	Illumina [27896057] (imputed)	N
956	chr15	48749702	48749703	rs2017765	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q21.1	FBN1	rs2017765-?		3E-24				Affymetrix, Illumina [NR] (imputed)	N
956	chr15	48755167	48755168	rs9806595	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	15q21.1		rs9806595-T	NR	2E-8		0.0133	[0.0088-0.0178] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
956	chr15	48755167	48755168	rs9806595	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	15q21.1		rs9806595-T	0.77	6E-9		0.004	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
956	chr15	48755167	48755168	rs9806595	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	14,462 Asian ancestry individuals	NA	15q21.1		rs9806595-T	0.67	1E-7		0.018	mm decrease	Affymetrix, Illumina [7861976] (imputed)	N
956	chr15	48756535	48756536	rs34539187	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q21.1	FBN1	rs34539187-C	0.88	6E-9		5.808	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
957	chr15	48760896	48760897	rs11855195	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q21.1	NR	rs11855195-A		9E-12		0.12	[0.081-0.159] unit increase	NR [NR]	N
957	chr15	48764941	48764942	rs16960981	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		15q21.1	NR	rs16960981-G	NR	2E-7		0.506585	[0.32-0.7] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
957	chr15	48773925	48773926	rs200342067	32499652	Asgari S	2020-05-13	Nature	A positively selected FBN1 missense variant reduces height in Peruvian individuals.	Height	3,134 Peruvian individuals	598 Peruvian individuals	15q21.1	FBN1	rs200342067-C	0.0472	9E-11		2.14	[1.49-2.79] cm decrease	Affymetrix [7756401] (imputed)	N
957	chr15	48787244	48787245	rs6493325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q21.1	NR	rs6493325-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
957	chr15	48797306	48797307	rs25458	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q21.1	FBN1	rs25458-?	NA	8E-10		1.9	[1.29-2.51] unit decrease	Affymetrix [5541230] (imputed)	N
957	chr15	48801934	48801935	rs8030753	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	15q21.1	FBN1	rs8030753-T	0.2	3E-8		2.25	[1.47-3.03] unit increase	Affymetrix, Illumina [NR] (imputed)	N
957	chr15	48805636	48805637	rs2306352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.1		rs2306352-A	0.25	2E-14		7.68	z score increase	Affymetrix [9061022] (imputed)	N
957	chr15	48810498	48810499	rs7184016	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q21.1	NR	rs7184016-T	0.2435	7E-10				NR [9056863] (imputed)	N
957	chr15	48821047	48821048	rs2279237	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	15q21.1		rs2279237-A	NR	4E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 47000000] (imputed)	N
957	chr15	48822757	48822757	rs545317462	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q21.1	FBN1	rs545317462-A	0.8552	1E-8		0.113	[0.073-0.153] unit decrease	Affymetrix [~ 11900000] (imputed)	N
957	chr15	48840834	48840835	rs595244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q21.1	FBN1	rs595244-T	NR	5E-8		0.0261904	[0.017-0.036] unit decrease	Affymetrix [321016] (imputed)	N
957	chr15	48840834	48840835	rs595244	27418160	van 't Hof FN	2016-07-14	J Am Heart Assoc	Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms.	Intracranial, abdominal aortic or thoracic aortic aneurysm (pleiotropy)	1,516 European ancestry intracranial aneurysm cases, 818 European ancestry abdominal aortic aneurysm cases, 760 European ancestry thoracic aortic aneurysm cases, 9,507 European ancestry controls	NA	15q21.1	FBN1	rs595244-T	0.082	1E-8		1.35	[1.25-1.45]	Illumina [9245988] (imputed)	N
957	chr15	48842669	48842670	rs1871485	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1871485-C	0.849259	4E-8		0.0665205	[0.042-0.091] decrease	Affymetrix [11014269] (imputed)	N
957	chr15	48848129	48848130	rs685091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q21.1		rs685091-C	NR	1E-22		0.0354	[0.028-0.042] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
957	chr15	48850484	48850485	rs17748607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.1		rs17748607-?	NR	1E-7				NR [~ 8900000] (imputed)	N
957	chr15	48862042	48862043	rs1848050	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	15q21.1		rs1848050-G	0.901056	2E-15		0.0903553	[0.067-0.114] decrease	Affymetrix [NR]	N
957	chr15	48879290	48879291	rs627634	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	15q21.1	FBN1	rs627634-T	0.09	1E-29	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
957	chr15	48883938	48883939	rs1818275	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q21.1	FBN1	rs1818275-T	0.9048	8E-37		0.5369	[0.45-0.62] mmHg increase	Affymetrix [NR] (imputed)	N
957	chr15	48885004	48885005	rs686861	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q21.1	FBN1	rs686861-A	0.91	2E-12	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
958	chr15	48892938	48892939	rs920184	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q21.1	NR	rs920184-T	0.249	5E-12				NR [9056863] (imputed)	N
958	chr15	48900096	48900097	rs1678981	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.1	NR	rs1678981-C		4E-10		0.405	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48900096	48900097	rs1678981	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q21.1	NR	rs1678981-C		8E-15		0.483	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48900096	48900097	rs1678981	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q21.1	NR	rs1678981-C		2E-13	(EA)	0.485	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48900096	48900097	rs1678981	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.1	NR	rs1678981-C		8E-34		0.525	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48900585	48900586	rs1876206	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	15q21.1	FBN1	rs1876206-?	NR	6E-6				Affymetrix [70897]	N
958	chr15	48903125	48903126	rs1018148	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q21.1	FBN1	rs1018148-A	0.0949	6E-14		0.4312	[0.32-0.54] mmHg decrease	Affymetrix [NR] (imputed)	N
958	chr15	48907180	48907181	rs17462641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.1		rs17462641-?	NR	6E-11				NR [~ 8900000] (imputed)	N
958	chr15	48914774	48914775	rs1036476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aortic aneurysm	3,230 European ancestry cases, 475,964 European ancestry controls, 1,155 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	15q21.1		rs1036476-C	NR	9E-10		0.2888	[0.2-0.38] unit increase	Affymetrix, Illumina [25843950] (imputed)	N
958	chr15	48914774	48914775	rs1036476	21909107	LeMaire SA	2011-09-11	Nat Genet	Genome-wide association study identifies a susceptibility locus for thoracic aortic aneurysms and aortic dissections spanning FBN1 at 15q21.1.	Thoracic aortic aneurysms and dissections	765 European ancestry cases, 874 European ancestry controls	548 European ancestry cases, 626 European ancestry controls	15q21.1	FBN1	rs1036476-?	NR	6E-13		1.9	[NR]	Illumina [NR] (imputed)	N
958	chr15	48914925	48914926	rs1036477	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q21.1	FBN1	rs1036477-G	0.103	4E-8	(EA, initial)	0.415	[0.27-0.56] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
958	chr15	48914925	48914926	rs1036477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.1	FBN1	rs1036477-A		2E-7		0.31	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48914925	48914926	rs1036477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q21.1	FBN1	rs1036477-A		2E-11	(EA)	0.431	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48914925	48914926	rs1036477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q21.1	FBN1	rs1036477-A		1E-9		0.325	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48914925	48914926	rs1036477	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.1	FBN1	rs1036477-A		2E-26		0.418	unit increase	Affymetrix [at least 2696785] (imputed)	N
958	chr15	48922359	48922360	rs689304	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	15q21.1		rs689304-C	0.906288	1E-12		0.0901022	[0.065-0.115] decrease	Affymetrix [NR]	N
958	chr15	48922359	48922360	rs689304	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	15q21.1		rs689304-?	NR	5E-7		1.64165	[1.35-1.99]	NR [NR] (imputed)	N
958	chr15	48931450	48931451	rs2247876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q21.1		rs2247876-C	NR	3E-32		0.0174	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
958	chr15	48931450	48931451	rs2247876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q21.1		rs2247876-C	0.248769	2E-20		0.0215895	[0.017-0.026] unit decrease	Illumina [13479295] (imputed)	N
958	chr15	48931450	48931451	rs2247876	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.1	FBN1	rs2247876-?	NR	2E-29		0.037066095	[0.031-0.044] unit decrease	Illumina [27896057] (imputed)	N
958	chr15	48939887	48939888	rs4775769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q21.1		rs4775769-?	NR	3E-9				NR [~ 8900000] (imputed)	N
958	chr15	48939887	48939888	rs4775769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.1		rs4775769-?	NR	2E-34				NR [~ 8900000] (imputed)	N
958	chr15	48943889	48943891	rs60317590	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q21.1	CEP152	rs60317590-CTT	0.1717	2E-11		0.2172	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
958	chr15	48947961	48947962	rs1848053	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q21.1	RP11-227D13.1	rs1848053-A	0.7521	3E-7		0.0385	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
958	chr15	48992896	48992897	rs2725544	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	15q21.1	CEP152	rs2725544-C	0.23	2E-6		0.12	[0.061-0.179] unit decrease	Illumina [2380486] (imputed)	N
959	chr15	49048127	49048128	rs16961557	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.1	CEP152	rs16961557-G	0.0090	5E-6	(Height )	0.03	[NR] cm increase	Illumina [899892]	N
959	chr15	49074091	49074092	rs16961637	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.1	NR	rs16961637-C	0.01045	2E-9	(COL18A1)	0.07528	NR unit increase	Illumina [1671387] (imputed)	N
959	chr15	49124403	49124404	rs12899937	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		15q21.1	SHC4	rs12899937-A	0.155	9E-6		0.492	[0.28-0.71] unit decrease	Illumina [640625] (imputed)	N
960	chr15	49154717	49154718	rs142453246	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q21.1	NR	rs142453246-T	NR	9E-6		1.25	[NR]	Illumina [7158791] (imputed)	N
960	chr15	49189486	49189487	rs143692029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q21.1		rs143692029-?	NR	3E-12				NR [~ 8900000] (imputed)	N
960	chr15	49192790	49192791	rs8023445	21621269	Aragam N	2011-05-26	J Affect Disord	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 cases, 1,630 controls	NA	15q21.1	SHC4	rs8023445-?		2E-6				Perlegen [433556]	N
960	chr15	49206901	49206902	rs934741	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49209631	49209632	rs12593599	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49212606	49212607	rs12915772	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49214055	49214056	rs7164451	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49215308	49215309	rs1007662	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49216329	49216330	rs4608275	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49217966	49217967	rs4774529	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49218506	49218507	rs17384124	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49219435	49219436	rs7178573	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49219774	49219775	rs10519199	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49220616	49220617	rs11070664	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49221252	49221253	rs11070665	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49221590	49221591	rs10519201	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49221590	49221591	rs10519201	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls		SHC4	rs10519201-T	0.132	6E-6	(OCPD)	1.158	[1.09-1.23]	Illumina [283744]	N
960	chr15	49222245	49222246	rs12440434	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49222575	49222576	rs2413923	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49224181	49224182	rs16952958	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49225122	49225123	rs7178085	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49225390	49225391	rs11638748	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49227820	49227821	rs4491452	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49230664	49230665	rs10851473	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49231110	49231111	rs12323963	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	15q21.1	NR	rs12323963-?	NR	2E-6		2.75	NR	Affymetrix [~ 18000000] (imputed)	N
960	chr15	49233377	49233378	rs16961929	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49238429	49238430	rs12898878	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	15q21.1	SHC4	rs12898878-T	NR	5E-6		0.1375	[0.078-0.197] unit decrease	NR [NR] (imputed)	N
960	chr15	49238783	49238784	rs11070668	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49242804	49242805	rs12915940	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49247519	49247520	rs4775789	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49248000	49248001	rs28392847	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,534 Han Chinese ancestry women	964 European ancestry women	15q21.1	SHC4	rs28392847-?	NR	9E-10	(Additive, crow's feet)	0.21	unit decrease	Illumina [6328611] (imputed)	N
960	chr15	49248000	49248001	rs28392847	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,534 Han Chinese ancestry women	964 European ancestry women	15q21.1	SHC4	rs28392847-?	0.32	2E-8	(Additive, crow's feet, East Asian)	0.16	NR unit decrease	Illumina [6328611] (imputed)	N
960	chr15	49251366	49251367	rs11070670	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49253476	49253477	rs11636875	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49253960	49253961	rs8031813	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
960	chr15	49260600	49260601	rs4474633	29187746	Howard DM	2017-11-30	Transl Psychiatry	Genome-wide haplotype-based association analysis of major depressive disorder in Generation Scotland and UK Biobank.	Major depressive disorder	2,605 European ancestry cases, 16,168 European ancestry controls	8,508 European ancestry cases, 16,527 European ancestry controls	15q21.1	SHC4	rs11070668-A,rs11070670-A,rs12440434-A,rs11636875-A,rs2413923-A,rs16961929-G,rs934741-G,rs8031813-A,rs7178573-G,rs11070665-G,rs10519201-C,rs12593599-G,rs12915940-G,rs16952958-A,rs11070664-A,rs4608275-G,rs1007662-G,rs17384124-A,rs12915772-A,rs4775789-A,rs10851473-G,rs4491452-A,rs11638748-G,rs4774529-G,rs7178085-C,rs7164451-A,rs4474633-G,rs10519199-A	NR	4E-6		1.41	[1.22-1.61]	Illumina [at least 2618094] (imputed)	N
961	chr15	49288077	49288078	rs4775792	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	15q21.1	SECISBP2L	rs4775792-T	0.3684	4E-8		0.012681771	[0.0081-0.0172] unit increase	Affymetrix [11514936] (imputed)	N
961	chr15	49298988	49298989	rs531174177	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	15q21.1	SECISBP2L	rs531174177-C	0.9971	4E-6		0.3477	[0.2-0.5] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
961	chr15	49317757	49317758	rs7164309	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	15q21.1	SECISBP2L	rs7164309-?	NR	3E-9		0.0157	[0.011-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
961	chr15	49330853	49330854	rs79040073	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q21.1	SECISBP2L	rs79040073-C	0.7531793609999999	2E-7		1.0951287	[1.06-1.13]	Illumina [10439017] (imputed)	N
961	chr15	49353217	49353218	rs725815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q21.1		rs725815-T	NR	5E-18		0.0235	[0.018-0.029] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
961	chr15	49358307	49358308	rs11632520	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q21.1	NR	rs11632520-T	0.1692	1E-13		0.002245	[0.0017-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
961	chr15	49376623	49376624	rs77468143	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q21.1	NR	rs77468143-T	NR	1E-7		1.09	[1.05-1.12]	NR [NR] (imputed)	N
961	chr15	49376623	49376624	rs77468143	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q21.1	NR	rs77468143-T	NR	7E-12		1.14	[1.10-1.18]	NR [NR] (imputed)	N
961	chr15	49376623	49376624	rs77468143	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	15q21.1	SECISBP2L	rs77468143-T	0.767	7E-12		1.14	[1.10-1.18]	Illumina [~ 11000000] (imputed)	N
961	chr15	49376623	49376624	rs77468143	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q21.1	SECISBP2L, COPS2	rs77468143-T	0.7461243470000001	1E-9		1.0861762	[1.06-1.12]	Illumina [10439017] (imputed)	N
961	chr15	49376623	49376624	rs77468143	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.1	SECISBP2L, COPS2	rs77468143-T	0.747375077	2E-16		1.1677256	[1.13-1.21]	Illumina [10439017] (imputed)	N
961	chr15	49409526	49409527	rs79234094	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	15q21.1	COPS2	rs79234094-A	0.2624	4E-13		0.0209	[0.015-0.027] unit increase	Affymetrix [19819130] (imputed)	N
961	chr15	49409526	49409527	rs79234094	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q21.1	COPS2	rs79234094-A	0.2624	3E-23		0.0268	[0.022-0.032] unit increase	Affymetrix [19819130] (imputed)	N
962	chr15	49479025	49479026	rs7169304	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q21.1	GALK2	rs7169304-G	0.7218229469999999	9E-6		1.0758595	[1.04-1.11]	Illumina [10439017] (imputed)	N
962	chr15	49479025	49479026	rs7169304	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q21.1	GALK2	rs7169304-G	0.720637921	1E-6		1.0655863	[1.04-1.09]	Illumina [10439017] (imputed)	N
962	chr15	49479025	49479026	rs7169304	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.1	GALK2	rs7169304-G	0.72238002	3E-12		1.1346389	[1.1-1.18]	Illumina [10439017] (imputed)	N
962	chr15	49479477	49479478	rs12901353	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.1		rs12901353-T	0.33	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
962	chr15	49542200	49542201	rs7167852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.2		rs7167852-?	NR	4E-13				NR [~ 8900000] (imputed)	N
963	chr15	49606297	49606298	rs11632038	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.2	GALK2	rs11632038-A	0.794887001	5E-10		1.1334025	[1.09-1.18]	Illumina [10439017] (imputed)	N
963	chr15	49606319	49606320	rs11857515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q21.2	GALK2	rs11857515-A	0.21403	1E-12		0.019843705	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr15	49609561	49609562	rs4775808	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs4775808-T	0.718122	2E-13				Affymetrix, Illumina [17210439] (imputed)	N
963	chr15	49609561	49609562	rs4775808	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q21.2	NR	rs4775808-T	0.708203	6E-15		0.016725	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
964	chr15	49688972	49688973	rs12909598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q21.2		rs12909598-A	NR	5E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
964	chr15	49688972	49688973	rs12909598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	15q21.2		rs12909598-A	NR	6E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
964	chr15	49699310	49699311	rs36023246	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q21.2	FGF7	rs36023246-A	0.60984375	1E-8	(FGF7, 4487_1_1)	0.13787644	[0.09-0.185] unit increase	Illumina [> 1000000] (imputed)	N
964	chr15	49704740	49704741	rs12591300	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF7	5,365 Icelandic ancestry individuals	NA	15q21.2		rs12591300-A	0.339	1E-10		0.121966	[0.085-0.159] unit decrease	Illumina [7506463] (imputed)	N
964	chr15	49706144	49706145	rs35251997	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	15q21.2	FAM227B	rs35251997-A	0.931	1E-9		0.0303	[0.021-0.04] unit decrease	Affymetrix [19819130] (imputed)	N
964	chr15	49706144	49706145	rs35251997	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q21.2	FAM227B	rs35251997-A	0.931	3E-27		0.0506	[0.041-0.06] unit decrease	Affymetrix [19819130] (imputed)	N
964	chr15	49706144	49706145	rs35251997	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q21.2	FAM227B	rs35251997-A	0.931	9E-16		0.0369	[0.028-0.046] unit decrease	Affymetrix [19819130] (imputed)	N
964	chr15	49706144	49706145	rs35251997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.2		rs35251997-?	NR	8E-33				NR [~ 8900000] (imputed)	N
964	chr15	49706416	49706417	rs73398264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	15q21.2		rs73398264-C	NR	1E-51		0.4662	[0.41-0.53] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
964	chr15	49711184	49711185	rs17477923	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	15q21.2	FAM227B	rs17477923-C	0.252838591055822	8E-44		0.0729	[0.063-0.083] SD decrease	Illumina [22400000] (imputed)	N
964	chr15	49711184	49711185	rs17477923	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	15q21.2	FAM227B/FGF7	rs17477923-T	0.72	6E-13		0.245	[0.18-0.31] unit decrease	Affymetrix, Illumina [5965951] (imputed)	N
964	chr15	49735296	49735297	rs4338740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	15q21.2		rs4338740-C	NR	3E-12		0.1844	[0.13-0.24] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
964	chr15	49735296	49735297	rs4338740	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	15q21.2	C15orf33, FGF7	rs4338740-T	0.738	1E-12	(thyroid volume)	0.067	[0.05-0.09] unit decrease	Affymetrix [2748910] (imputed)	N
964	chr15	49735296	49735297	rs4338740	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	15q21.2	C15orf33, FGF7	rs4338740-C	0.261	3E-13	(goiter)	1.45	[1.32-1.59]	Affymetrix [2748910] (imputed)	N
964	chr15	49741070	49741071	rs17400427	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.2	FAM227B, FGF7	rs17400427-T	0.743916677	6E-10		1.1236535	[1.08-1.17]	Illumina [10439017] (imputed)	N
964	chr15	49746363	49746364	rs10519227	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	15q21.2	FGF7	rs10519227-A	0.245	6E-10	(TSH - Males)	0.095	[0.066-0.124] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
964	chr15	49746363	49746364	rs10519227	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	15q21.2	FGF7	rs10519227-A	0.245	1E-11	(TSH)	0.072	[0.05-0.094] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
964	chr15	49765106	49765111	rs147273035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q21.2		rs147273035-G	NR	8E-11		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
964	chr15	49794019	49794020	rs7169799	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q21.2	NR	rs7169799-C	0.4477	3E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
964	chr15	49796630	49796630	rs57784326	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	15q21.2	NR	rs57784326-?	NR	3E-6		0.2631	[0.15-0.37] unit increase	Illumina [at least 560000] (imputed)	N
965	chr15	49829018	49829019	rs10851478	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	15q21.2		rs10851478-A	NR	1E-8		1.2184		Illumina [up to 7574753] (imputed)	N
965	chr15	49829018	49829019	rs10851478	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q21.2	FAM227B	rs10851478-T	0.583962	6E-9		0.0123157	[0.0082-0.0165] unit increase	Affymetrix [NR] (imputed)	N
965	chr15	49829018	49829019	rs10851478	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q21.2	FAM227B	rs10851478-T	0.583982	7E-10		0.0130139	[0.0089-0.0172] unit increase	Affymetrix [NR] (imputed)	N
965	chr15	49829018	49829019	rs10851478	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	15q21.2	LOC105370811	rs10851478-G	0.36	4E-7		1.1865	NR	Illumina [7574753] (imputed)	N
965	chr15	49829018	49829019	rs10851478	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.2	C15orf33	rs10851478-?	NR	4E-6	(TAG 58:9)	0.15283182	[0.088-0.218] unit decrease	Affymetrix [at least 2500000] (imputed)	N
965	chr15	49830707	49830708	rs1911612	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF7	5,366 Icelandic ancestry individuals	NA	15q21.2		rs1911612-A	0.3226	1E-9		0.12024	[0.081-0.159] unit decrease	Illumina [7506463] (imputed)	N
965	chr15	49830707	49830708	rs1911612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q21.2		rs1911612-A	NR	7E-9		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
965	chr15	49836866	49836867	rs12593917	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q21.2	FAM227B	rs12593917-T	0.38	9E-9		5.75	z-score increase	Affymetrix [4314223] (imputed)	N
965	chr15	49839546	49839547	rs4267253	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q21.2	FGF7	rs4267253-G	0.90421875	1E-6	(FGF7, 14031_18_3)	0.20242454	[0.12-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
965	chr15	49841679	49841680	rs7182948	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.2	FAM227B	rs7182948-G	0.707325111999999	2E-9		1.1155612	[1.08-1.16]	Illumina [10439017] (imputed)	N
965	chr15	49842250	49842251	rs566865466	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q21.2	NR	rs566865466-T	0.636004	6E-12		0.0137315	[0.0098-0.0176] unit increase	Affymetrix [15000001]	N
965	chr15	49869140	49869141	rs12912703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q21.2		rs12912703-G	NR	2E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
965	chr15	49871877	49871878	rs12899680	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q21.2	NR	rs12899680-G	0.481	2E-12	(Fibroblast growth factor 7, FGF7.14031.18.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
965	chr15	49872584	49872585	rs8027730	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	15q21.2		rs8027730-C	0.516078	3E-8		1.0638	NR	Affymetrix [7846216] (imputed)	N
965	chr15	49891093	49891094	rs11632201	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q21.2	FAM227B	rs11632201-T	0.517069	2E-12		0.00363877	[0.0026-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
966	chr15	49939845	49939846	rs8039808	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	15q21.2	DTWD1	rs8039808-A	0.06	5E-7	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
966	chr15	49960133	49960134	rs28516445	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q21.2	DTWD1, ATP8B4	rs28516445-A	0.735246537	9E-9		1.1145091	[1.07-1.16]	Illumina [10439017] (imputed)	N
966	chr15	49984709	49984710	rs72731149	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q21.2	DTWD1	rs72731149-G	0.91	8E-9		1.12	[1.08-1.16]	Affymetrix, Illumina [6224355] (imputed)	N
966	chr15	49994398	49994399	rs12904211	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q21.2	DTWD1, ATP8B4	rs12904211-T	0.6327392439999999	3E-6		1.0599552	[1.03-1.09]	Illumina [10439017] (imputed)	N
966	chr15	49998681	49998682	rs692309	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	15q21.2		rs692309-C	NR	5E-8		0.8152		Illumina [up to 7574753] (imputed)	N
966	chr15	50047500	50047501	rs563061914	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	15q21.2		rs563061914-G	0.01014	7E-6		4.456	[2.322-8.551]	Affymetrix [7975321] (imputed)	N
966	chr15	50049425	50049426	rs692885	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.2	NR	rs692885-?	NR	1E-6				Affymetrix [NR]	N
967	chr15	50087964	50087965	rs118164541	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Pandoraea abundance in stool	5,959 Finnish ancestry individuals	NA	15q21.2		rs118164541-A	0.0407163	2E-8		0.0639646	[0.042-0.086] unit decrease	Illumina [7980478] (imputed)	N
967	chr15	50140581	50140582	rs11632077	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	15q21.2		rs11632077-?	NR	7E-6		0.946024	[0.92-0.97]	NR [685523]	N
967	chr15	50194728	50194729	rs78502640	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.2	NR	rs78502640-A	0.0122	6E-10	(F2)	0.03681	NR unit increase	Illumina [1671387] (imputed)	N
967	chr15	50197436	50197437	rs59490780	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.2	NR	rs59490780-T	0.1185	2E-8	(EIF4A1)	0.2136	NR unit increase	Illumina [1671387] (imputed)	N
967	chr15	50197436	50197437	rs59490780	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.2	NR	rs59490780-T	0.1185	2E-8	(EIF3M)	0.003699	NR unit increase	Illumina [1671387] (imputed)	N
968	chr15	50213689	50213690	rs6493385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	15q21.2		rs6493385-T	NR	4E-8		0.0532	[0.034-0.072] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
968	chr15	50216201	50216202	rs10519248	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q21.2	NR	rs10519248-?	NR	2E-6	(Chao1 richness estimate)	0.867416	[0.51-1.23] unit increase	Illumina [5293637] (imputed)	N
968	chr15	50219252	50219253	rs4386084	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	15q21.2	ATP8B4	rs4386084-T	0.3294	1E-10		0.02376445	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr15	50219252	50219253	rs4386084	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	15q21.2	ATP8B4	rs4386084-T	0.3293	3E-10		0.02364264	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr15	50240199	50240200	rs2413983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q21.2	ATP8B4	rs2413983-A	0.452872	1E-12		0.015932838	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr15	50271251	50271252	rs2413994	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	15q21.2	NR	rs2413994-?	NR	1E-8				Illumina [at least 7383741] (imputed)	N
968	chr15	50277618	50277619	rs8027524	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q21.2	ATP8B4	rs8027524-T	0.3191	9E-9		0.1182	[0.078-0.159] mmHg increase	Affymetrix [NR] (imputed)	N
968	chr15	50305401	50305402	rs148558829	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.2	NR	rs148558829-C	0.0122	7E-10	(F2)	0.03668	NR unit increase	Illumina [1671387] (imputed)	N
968	chr15	50307415	50307416	rs2899446	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q21.2	NR	rs2899446-G	NR	3E-6	(Hispanic)	2.28	[1.34-3.21] unit increase	Affymetrix [14000000] (imputed)	N
968	chr15	50308949	50308950	rs8033655	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q21.2	ATP8B4	rs8033655-G	NR	2E-7		2.29	[1.43-3.14] unit increase	Affymetrix [14000000] (imputed)	N
968	chr15	50323353	50323354	rs7165755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.2		rs7165755-?	NR	4E-13				NR [~ 8900000] (imputed)	N
969	chr15	50341810	50341811	rs111544170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	15q21.2		rs111544170-G	NR	1E-9		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
969	chr15	50353276	50353277	rs12903325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	15q21.2		rs12903325-G	0.361855	2E-16		0.0388048	[0.03-0.048] unit decrease	Illumina [13469940] (imputed)	N
969	chr15	50353276	50353277	rs12903325	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	15q21.2	NR	rs12903325-?	NR	4E-8				Affymetrix, Illumina [6211246] (imputed)	N
969	chr15	50353276	50353277	rs12903325	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	15q21.2	NR	rs12903325-G	0.2404	5E-10		0.2216	[0.15-0.29] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
969	chr15	50357742	50357743	rs7172615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	15q21.2	NR	rs7172615-G	0.678591	1E-15		0.042982	[0.032-0.054] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
969	chr15	50357742	50357743	rs7172615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs7172615-T	0.248589	1E-20				Affymetrix, Illumina [19905671] (imputed)	N
969	chr15	50359223	50359224	rs12050709	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF7	5,365 Icelandic ancestry individuals	NA	15q21.2		rs12050709-C	0.2623	1E-22		0.200845	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
969	chr15	50363582	50363583	rs36102158	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF7	5,366 Icelandic ancestry individuals	NA	15q21.2		rs36102158-A	0.2415	7E-46		0.301488	[0.26-0.34] unit decrease	Illumina [7506463] (imputed)	N
969	chr15	50363582	50363583	rs36102158	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD34 on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q21.2		rs36102158-A	0.16251	2E-8		0.2745	[0.18-0.37] unit increase	Illumina [16999215] (imputed)	N
969	chr15	50364840	50364841	rs7162172	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q21.2	FGF7	rs7162172-C	0.392	7E-13	(Fibroblast growth factor 7, FGF7.14031.18.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
969	chr15	50365647	50365648	rs113119217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs113119217-A	0.25386	6E-13				Affymetrix, Illumina [24588908] (imputed)	N
969	chr15	50376438	50376439	rs11070747	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	15q21.2	ATP8B4, SLC27A2	rs11070747-C	0.31	6E-6	(ALL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
969	chr15	50382704	50382705	rs2414016	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs2414016-A	0.339651	6E-13				Affymetrix, Illumina [17210439] (imputed)	N
969	chr15	50387677	50387678	rs12909131	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	15q21.2	ATP8B4	rs12909131-T	0.23085	1E-7		0.030822	[0.019-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
969	chr15	50392820	50392821	rs11857230	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	15q21.2	ATP8B4	rs11857230-?	NR	6E-13		0.04403	[0.032-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
969	chr15	50397439	50397440	rs12595202	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Geminocystis abundance in stool	5,959 Finnish ancestry individuals	NA	15q21.2		rs12595202-T	0.305237	4E-8		0.0406348	[0.026-0.055] unit decrease	Illumina [7980478] (imputed)	N
969	chr15	50444823	50444824	rs10744955	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	15q21.2	NR	rs10744955-?	NR	6E-6				Illumina [at least 7383741] (imputed)	N
969	chr15	50452168	50452169	rs143122441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.2		rs143122441-?	NR	5E-10				NR [~ 8900000] (imputed)	N
970	chr15	50477137	50477138	rs1365505	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	15q21.2	SLC27A2	rs1365505-T	0.68	4E-14	(10-undecenoate (11:1n1)/X-11438)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
970	chr15	50486016	50486017	rs1124609	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	15q21.2	NR	rs1124609-A	0.91	3E-6		0.02401461	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
970	chr15	50499051	50499052	rs7161822	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	15q21.2	NR	rs7161822-G	0.29	6E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
970	chr15	50527201	50527202	rs35119987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q21.2		rs35119987-A	NR	2E-13		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
970	chr15	50527201	50527202	rs35119987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q21.2	SLC27A2	rs35119987-A	0.194629	3E-12		0.020624636	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
970	chr15	50527201	50527201	rs753775434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q21.2	NR	rs753775434-D	0.195585	3E-15		0.020896	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
970	chr15	50545158	50545159	rs2070596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q21.2	HDC	rs2070596-A	0.210759	5E-13		0.019840857	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
970	chr15	50545158	50545159	rs2070596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q21.2	NR	rs2070596-A	0.211403	3E-19		0.022675	[0.018-0.028] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
970	chr15	50555680	50555681	rs180930492	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		15q21.2	HDC	rs180930492-T	0.01	3E-9	(African)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
970	chr15	50565657	50565658	rs72737101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.2		rs72737101-?	NR	4E-12				NR [~ 8900000] (imputed)	N
971	chr15	50636017	50636018	rs11630063	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.2	GABPB1	rs11630063-?		9E-7				Illumina [4322238] (imputed)	N
971	chr15	50650874	50650875	rs493971	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.2	NR	rs493971-?	NR	2E-41				Affymetrix [NR]	N
971	chr15	50660329	50660330	rs34454966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q21.2	GABPB1-AS1	rs34454966-C	0.267366	1E-13		0.01913105	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
971	chr15	50668998	50668999	rs72738949	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q21.2	NR	rs72738949-T	0.420114	3E-12		0.0188926	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
971	chr15	50694305	50694306	rs4774565	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q21.2	NR	rs4774565-G	0.3462	2E-6	(EA)	0.0329	[0.019-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
971	chr15	50718560	50718561	rs7164347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q21.2		rs7164347-?	NR	3E-13				NR [~ 8900000] (imputed)	N
971	chr15	50724134	50724135	rs62016946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.2		rs62016946-?	NR	1E-14				NR [~ 8900000] (imputed)	N
972	chr15	50725601	50725602	rs16963724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q21.2	NR	rs16963724-C	NR	7E-11		0.0193	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50731131	50731131	rs35912128	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	15q21.2	NR	rs35912128-AT	0.17	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
972	chr15	50734295	50734296	rs11857185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q21.2	USP8	rs11857185-T	0.027757	7E-10		0.042392816	[0.029-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr15	50745422	50745423	rs34269292	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q21.2	NR	rs34269292-A	0.8182	3E-9	(East Asian)	0.3825	[0.26-0.51] unit increase	Illumina [6200000] (imputed)	N
972	chr15	50756622	50756623	rs28495639	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	15q21.2	NR	rs28495639-A	0.1868	8E-10	(East Asian)	0.0966	[0.066-0.127] unit decrease	Illumina [6200000] (imputed)	N
972	chr15	50759427	50759428	rs4380013	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	15q21.2		rs4380013-A	0.1875	9E-10		1.0578092	[1.038906098-1.077056297]	Affymetrix, Illumina [NR] (imputed)	N
972	chr15	50760909	50760910	rs28840973	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q21.2	USP8	rs28840973-C	0.945321	1E-17		0.0352912	[0.027-0.043] unit decrease	NR [13737936] (imputed)	N
972	chr15	50760909	50760910	rs28840973	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q21.2	NR	rs28840973-C	0.8008	2E-8	(East Asian)	0.4771	[0.31-0.64] unit increase	Illumina [6200000] (imputed)	N
972	chr15	50770253	50770254	rs17696277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	15q21.2		rs17696277-G	0.20014	9E-9		0.0244643	[0.016-0.033] unit decrease	Illumina [13479091] (imputed)	N
972	chr15	50773786	50773787	rs3743044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q21.2	USP8	rs3743044-G	0.027683	3E-14		0.051373452	[0.038-0.065] unit increase	Affymetrix [93095623] (imputed)	N
972	chr15	50775561	50775562	rs3131560	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q21.2	USP8	rs3131560-T	0.534198	3E-8	(262 ms)	0.0301427	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
972	chr15	50775561	50775562	rs3131560	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q21.2	USP8	rs3131560-T	0.534198	2E-8	(264 ms)	0.0303706	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	1E-15		0.0327	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	1E-18		0.036	[0.028-0.044] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	2E-13		0.0315	[0.023-0.04] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	1E-10		0.0274	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	8E-18		0.0352	[0.027-0.043] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	8E-18		0.0352	[0.027-0.043] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50784989	50784990	rs146125856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	15q21.2	NR	rs146125856-C	NR	2E-15		0.0325	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50785015	50785016	rs148783236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.2	NR	rs148783236-G	NR	1E-11		0.0248	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
972	chr15	50785015	50785016	rs148783236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	15q21.2	NR	rs148783236-G	NR	3E-14		0.0278	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
972	chr15	50785015	50785016	rs148783236	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	15q21.2	USP8	rs148783236-A	NR	1E-13		1.724138	[1.72-1.72]	Illumina [up to 294091]	N
972	chr15	50787425	50787425	rs147661253	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	15q21.2	NR	rs147661253-TTG	0.246652	5E-6		1.1068	[1.0597-1.1561]	Affymetrix [16309199] (imputed)	N
972	chr15	50787425	50787425	rs147661253	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	15q21.2	NR	rs147661253-TTG	0.245337	5E-6		1.0845	[1.0474-1.1227]	Affymetrix [16396089] (imputed)	N
972	chr15	50797990	50797991	rs11854087	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q21.2	USP50	rs11854087-C	0.0277	8E-9		0.06329888	[0.042-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr15	50800094	50800095	rs3131610	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q21.2		rs3131610-A	0.25	4E-6		30.223555	z score increase	NR [6814003]	N
972	chr15	50800094	50800095	rs3131610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs3131610-A	0.310521	7E-36				Affymetrix, Illumina [24649327] (imputed)	N
972	chr15	50800094	50800095	rs3131610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	15q21.2	USP50	rs3131610-A	0.2502	2E-12		0.02910776	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr15	50800094	50800095	rs3131610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q21.2	USP50	rs3131610-A	0.2503	6E-12		0.02853039	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr15	50800094	50800095	rs3131610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	15q21.2	USP50	rs3131610-A	0.2504	2E-11		0.02810746	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr15	50800094	50800095	rs3131610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	15q21.2	USP50	rs3131610-A	0.2504	2E-11		0.02778724	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr15	50807453	50807454	rs12915841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs12915841-G	0.351358	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
972	chr15	50812796	50812797	rs3098189	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs3098189-?	NR	3E-7		5.098	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
972	chr15	50824722	50824723	rs3109899	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	15q21.2	NR	rs3109899-A	0.226	3E-6		0.96	[0.94-0.97]	Affymetrix, Illumina [up to 14542816] (imputed)	N
972	chr15	50835125	50835126	rs2135452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs2135452-C	0.267612	4E-13				Affymetrix, Illumina [23472807] (imputed)	N
972	chr15	50838235	50838236	rs3098202	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	15q21.2	TRPM7	rs3098202-?	NR	2E-6				Affymetrix, Illumina [22000000] (imputed)	N
972	chr15	50845017	50845018	rs3105593	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	15q21.2	USP50, TRPM7	rs3105593-T	0.446	3E-12		0.66	[0.46-0.86] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
972	chr15	50845235	50845236	rs3131586	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q21.2	NR	rs3131586-?	NR	8E-9		0.12964	[0.086-0.174] unit increase	Affymetrix [7794483] (imputed)	N
972	chr15	50845235	50845236	rs3131586	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q21.2	NR	rs3131586-?	NR	2E-8	(male)	0.19977	[0.13-0.27] unit increase	Affymetrix [7794483] (imputed)	N
972	chr15	50847400	50847401	rs3131584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q21.2		rs3131584-A	NR	2E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
972	chr15	50850557	50850558	rs2414073	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q21.2	TRPM7, RP11-120K9.2	rs2414073-C	0.4436	2E-8		0.011354413	[0.0074-0.0153] unit decrease	Affymetrix [up to 18485882] (imputed)	N
972	chr15	50850561	50850562	rs2414072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.2		rs2414072-A	0.4443	4E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
972	chr15	50851202	50851203	rs7163628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q21.2		rs7163628-T	NR	1E-8		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
972	chr15	50851558	50851558	rs200162706	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	15q21.2	TRPM7	rs200162706-?	NR	5E-12		0.0018	[0.0012-0.0024] unit decrease	Affymetrix [21347608] (imputed)	N
972	chr15	50851558	50851558	rs200162706	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	15q21.2	TRPM7	rs200162706-?	NR	1E-8		0.0025	[0.0015-0.0035] unit decrease	Affymetrix [21347608] (imputed)	N
972	chr15	50853638	50853639	rs62021060	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	15q21.2	TRPM7	rs62021060-C	0.01	6E-8	(M, Waist circumference)	16.41	[5.63-27.19] unit increase	Illumina [125878]	N
973	chr15	50863930	50863931	rs60752175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q21.2		rs60752175-A	NR	7E-14		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
973	chr15	50873343	50873344	rs2414059	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	15q21.2	NR	rs2414059-A	0.51	2E-6		1.24	[0.73-1.75] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
973	chr15	50878629	50878630	rs8042919	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	15q21.2	NR	rs8042919-A	0.1109	4E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
973	chr15	50914626	50914627	rs17598819	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	15q21.2	TRPM7	rs17598819-T	0.01	5E-6	(M, BMI)	0.12	[0.061-0.179] unit increase	Illumina [125878]	N
973	chr15	50914626	50914627	rs17598819	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	15q21.2	TRPM7	rs17598819-T	0.01	1E-8	(M, Hip circumference)	18.05	[11.93-24.17] unit increase	Illumina [125878]	N
973	chr15	50938977	50938978	rs2899463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q21.2		rs2899463-?	NR	1E-13				NR [~ 8900000] (imputed)	N
973	chr15	50938977	50938978	rs2899463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.2	TRPM7	rs2899463-T		6E-7		0.189	unit increase	Affymetrix [at least 2696785] (imputed)	N
973	chr15	50938977	50938978	rs2899463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q21.2	TRPM7	rs2899463-T		3E-6		0.167	unit increase	Affymetrix [at least 2696785] (imputed)	N
973	chr15	50938977	50938978	rs2899463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q21.2	TRPM7	rs2899463-T		1E-9		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
973	chr15	50946814	50946815	rs11070802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q21.2		rs11070802-G	NR	3E-15		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
973	chr15	50954277	50954278	rs2414064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q21.2		rs2414064-A	NR	7E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
973	chr15	50962582	50962583	rs148131145	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	15q21.2		rs148131145-C	0.01916	2E-6		2.713	[1.797-4.096]	Affymetrix [7975321] (imputed)	N
973	chr15	50974452	50974453	rs12595562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q21.2	NR	rs12595562-C	0.214133	7E-15		0.017802	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
973	chr15	50983542	50983543	rs12443147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q21.2	NR	rs12443147-T	NR	3E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
973	chr15	50984509	50984510	rs4774574	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q21.2	TRPM7	rs4774574-G	0.82	9E-7	(conditional on rs72731149)	1.07	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
973	chr15	50984643	50984644	rs12901379	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	15q21.2	TRPM7, SPPL2A	rs12901379-?	NR	3E-12		0.0421	[0.03-0.054] unit increase novel	Illumina [6108953] (imputed)	N
974	chr15	50991568	50991569	rs78099598	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q21.2	NR	rs78099598-G	0.196255	7E-15		0.01862	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
974	chr15	50992008	50992009	rs17645935	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	15q21.2	NR	rs17645935-A	0.801	9E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [up to 14542816] (imputed)	N
974	chr15	50994349	50994350	rs12903573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q21.2	NR	rs12903573-T	0.118952	7E-13		0.020403	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
974	chr15	50996468	50996469	rs12900430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.2		rs12900430-T	0.4764	5E-9	(conditional-joint)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
974	chr15	50996468	50996469	rs12900430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.2	Intergenic	rs12900430-T	0.4764	9E-9	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
974	chr15	51000899	51000900	rs1257992813	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q21.2		rs1257992813-CA	NR	7E-6		0.82382		Affymetrix, Illumina [62056310] (imputed)	N
974	chr15	51000967	51000968	rs12913657	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs12913657-C	0.144	4E-7		0.0702482	[0.043-0.097] unit decrease	Affymetrix [up to 8900000] (imputed)	N
974	chr15	51000967	51000968	rs12913657	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs12913657-C	0.144	2E-8	(men)	0.0939528	[0.061-0.127] unit decrease	Affymetrix [up to 8900000] (imputed)	N
974	chr15	51005956	51005957	rs12440864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q21.2		rs12440864-G	NR	2E-21		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
974	chr15	51006323	51006324	rs12324521	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.2	NR	rs12324521-A	NR	1E-9		0.0438	[0.03-0.058] unit increase	Affymetrix [9000000] (imputed)	N
974	chr15	51007728	51007729	rs12595082	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or HDL levels (pleiotropy)	404,128 European ancestry individuals with HDL-C measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	15q21.2		rs12595082-C	0.81	3E-8				NR [NR] (imputed)	N
974	chr15	51007728	51007729	rs12595082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.2	NR	rs12595082-T	NR	4E-9		0.0197	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
974	chr15	51007728	51007729	rs12595082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q21.2	NR	rs12595082-T	NR	5E-14		0.0251	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
974	chr15	51007728	51007729	rs12595082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.2	NR	rs12595082-T	NR	1E-9		0.0192	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
974	chr15	51007728	51007729	rs12595082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	15q21.2	NR	rs12595082-T	NR	2E-11		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
974	chr15	51008686	51008687	rs10467994	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	15q21.2	SPPL2A	rs10467994-T	0.667	4E-7		1.0638298	[1.04-1.09]	Affymetrix, Illumina [11480632] (imputed)	N
974	chr15	51010270	51010271	rs60695341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	15q21.2		rs60695341-T	0.36214	5E-11		0.0323613	[0.023-0.042] unit decrease	Illumina [13468899] (imputed)	N
974	chr15	51010270	51010271	rs60695341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q21.2	SPPL2A	rs60695341-T	0.197422	5E-25		0.028703822	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
974	chr15	51010270	51010271	rs60695341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q21.2	SPPL2A	rs60695341-T	0.197399	3E-11		0.018420639	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
974	chr15	51010270	51010271	rs60695341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q21.2	NR	rs60695341-T	0.197348	3E-38		0.029901	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
974	chr15	51010270	51010271	rs60695341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs60695341-T	0.216088	6E-12				Affymetrix, Illumina [23467995] (imputed)	N
974	chr15	51014715	51014716	rs12913259	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	15q21.2	SPPL2A	rs12913259-T	0.3	2E-12		0.0068	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
974	chr15	51015691	51015692	rs11630054	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		15q21.2	SPPL2A	rs11630054-?	NR	3E-10		0.0067	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
974	chr15	51024286	51024287	rs12915052	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		15q21.2	SPPL2A	rs12915052-?	NR	2E-10		0.0069	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
974	chr15	51033556	51033557	rs10152230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q21.2	SPPL2A	rs10152230-T	0.314157	3E-22		0.02343628	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
974	chr15	51037973	51037974	rs12438326	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	SPPL2A	rs12438326-A	NR	2E-8		5.58	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
974	chr15	51040797	51040798	rs8035452	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	15q21.2	SPPL2A	rs8035452-T	0.661	3E-7		1.0753	[1.04-1.1]	Illumina [7055881] (imputed)	N
974	chr15	51045615	51045616	rs8042462	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q21.2	USP50, SPPL2A	rs8042462-?		6E-12				Affymetrix, Illumina [NR] (imputed)	N
974	chr15	51048601	51048602	rs12915708	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	15q21.2	SPPL2A	rs12915708-C	0.3	7E-10	(EA)	0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
974	chr15	51055820	51055821	rs12905672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs12905672-T	0.130399	4E-14				Affymetrix, Illumina [24558453] (imputed)	N
974	chr15	51055821	51055822	rs12905525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q21.2	SPPL2A	rs12905525-G	0.3447	2E-10		0.02430576	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
974	chr15	51057180	51057181	rs12912192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q21.2		rs12912192-A	NR	6E-15		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
974	chr15	51057180	51057181	rs12912192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q21.2	SPPL2A	rs12912192-A	0.145071	2E-9		0.0189468	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
974	chr15	51057180	51057181	rs12912192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs12912192-A	0.153345	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
974	chr15	51057180	51057181	rs12912192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q21.2	NR	rs12912192-A	0.145554	1E-13		0.019634	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
974	chr15	51057180	51057181	rs12912192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q21.2		rs12912192-?	NR	3E-12				NR [~ 8900000] (imputed)	N
974	chr15	51058469	51058470	rs12902399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	15q21.2		rs12902399-A	0.198175	2E-8		0.0223698	[0.015-0.03] unit increase	Illumina [13478961] (imputed)	N
974	chr15	51058628	51058629	rs12593998	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q21.2	SPPL2A	rs12593998-C	0.3077	4E-10		0.02455731	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
974	chr15	51062316	51062317	rs12910301	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	15q21.2	SPPL2A, AP4E1	rs12910301-?	NR	2E-11		0.0334	[0.024-0.043] unit decrease	Illumina [6108953] (imputed)	N
974	chr15	51080001	51080002	rs35073878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	15q21.2		rs35073878-T	0.201805	2E-10		0.0228414	[0.016-0.03] unit decrease	Illumina [13478778] (imputed)	N
974	chr15	51085373	51085374	rs12902050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q21.2		rs12902050-C	NR	6E-16		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
974	chr15	51085373	51085374	rs12902050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q21.2		rs12902050-C	0.150513	3E-10		0.019450827	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
974	chr15	51087937	51087938	rs12916630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q21.2	NR	rs12916630-G	0.150138	2E-12		0.018197	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
974	chr15	51093899	51093900	rs145791702	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	15q21.2		rs145791702-T	0.02445	1E-6		2.493	[1.723-3.608]	Affymetrix [7975321] (imputed)	N
974	chr15	51095430	51095431	rs8034918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q21.2		rs8034918-T	NR	3E-16		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
974	chr15	51096566	51096567	rs11070814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs11070814-G	0.16502	7E-15				Affymetrix, Illumina [24653286] (imputed)	N
974	chr15	51101605	51101606	rs28621809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q21.2		rs28621809-?	NR	1E-22				NR [~ 8900000] (imputed)	N
974	chr15	51104349	51104350	rs12909505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q21.2		rs12909505-C	NR	2E-22		0.0192	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
974	chr15	51104349	51104350	rs12909505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q21.2		rs12909505-C	NR	3E-20		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
974	chr15	51104349	51104350	rs12909505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs12909505-C	0.451116	2E-28				Affymetrix, Illumina [23114412] (imputed)	N
974	chr15	51104349	51104350	rs12909505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q21.2	NR	rs12909505-C	0.428567	3E-28		0.021426	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
974	chr15	51106726	51106727	rs3848132	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-507J18.1	rs3848132-A	NR	4E-9		0.0199019	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
974	chr15	51106726	51106727	rs3848132	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q21.2	NR	rs3848132-A	0.29	8E-10		0.0123	[0.0083-0.0163] unit decrease	NR [NR]	N
974	chr15	51116594	51116595	rs138191809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.2		rs138191809-?	NR	3E-8				NR [~ 8900000] (imputed)	N
975	chr15	51124744	51124745	rs5812534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q21.2		rs5812534-A	0.700902	2E-10		0.015932502	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr15	51125318	51125319	rs8023655	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	15q21.2	SPPL2A, AP4E1	rs8023655-?	NR	9E-9		0.0267	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
975	chr15	51125318	51125319	rs8023655	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	15q21.2	SPPL2A, AP4E1	rs8023655-?	NR	3E-9		0.02691	[0.018-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
975	chr15	51146113	51146114	rs7181593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q21.2		rs7181593-C	0.288387	4E-11		0.016205119	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
975	chr15	51148140	51148146	rs371915836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q21.2		rs371915836-T	NR	2E-8		0.0146	[0.0095-0.0197] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
975	chr15	51150913	51150914	rs1290083	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	15q21.2	SPPL2A, AP4E1	rs1290083-?	NR	5E-24		0.04178	[0.034-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
975	chr15	51194563	51194564	rs116996118	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs116996118-?	NR	8E-6		4.475	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
975	chr15	51238094	51238095	rs1955	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		DCAF13P3	rs1955-A	0.24	2E-6				Illumina [1679420] (imputed)	N
976	chr15	51341866	51341867	rs12909519	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.2	AP4E1, TNFAIP8L3	rs12909519-?	NR	8E-19		0.025573308	[0.02-0.031] unit increase	Illumina [27896057] (imputed)	N
976	chr15	51352248	51352249	rs1124769	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	15q21.2	TNFAIP8L3	rs1124769-?	NR	9E-6	(TrailsA)			Illumina [up to 563855]	N
976	chr15	51352874	51352875	rs72744354	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (HDL cholesterol levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	15q21.2	TNFAIP8L3	rs72744354-G	0.96	5E-7	(European)	0.066	[0.046-0.086] unit decrease	Affymetrix [6982258] (imputed)	N
976	chr15	51360866	51360867	rs373736365	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q21.2	TNFAIP8L3	rs373736365-T	0.2843	5E-18		0.0189	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
976	chr15	51364728	51364729	rs11634895	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	15q21.2	AP4E1, TNFAIP8L3	rs11634895-A	NR	8E-10		0.146	[0.099-0.193] unit decrease	Affymetrix [7701190] (imputed)	N
976	chr15	51379535	51379536	rs11070834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q21.2	NR	rs11070834-A	NR	2E-14		0.0224	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
977	chr15	51386501	51386502	rs62018215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q21.2		rs62018215-?	NR	3E-8				NR [~ 8900000] (imputed)	N
977	chr15	51386501	51386502	rs62018215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.2	Intergenic	rs62018215-T	0.1565	2E-10	(MTAG)	0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
977	chr15	51386501	51386502	rs62018215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q21.2	Intergenic	rs62018215-T	0.1542	4E-8	(MTAG)	0.0174	[0.011-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
977	chr15	51387403	51387404	rs62018216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.2		rs62018216-T	0.1549	5E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
977	chr15	51389629	51389630	rs150406602	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	15q21.2	NR	rs150406602-A	0.0289884	1E-6		1.144	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
977	chr15	51411415	51411416	rs17703599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1	rs17703599-A	NR	1E-10		0.0238881	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
977	chr15	51412282	51412283	rs6493478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1	rs6493478-T	NR	7E-13		0.0224337	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
977	chr15	51431657	51431658	rs12902197	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	15q21.2	MIR4713HG	rs12902197-?	NR	6E-8				NR [~ 24000000] (imputed)	N
977	chr15	51436396	51436397	rs11070836	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	15q21.2	TNFAIP8L3, CYP19A1	rs11070836-?	NR	2E-6	(FEV1/FVC < 80%)	0.036	[NR] unit increase	Illumina [522636]	N
977	chr15	51436396	51436397	rs11070836	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	15q21.2	TNFAIP8L3	rs11070836-?	NR	8E-6		0.032	[NR] unit increase	Illumina [522636]	N
977	chr15	51436396	51436397	rs11070836	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	15q21.2	TNFAIP8L3	rs11070836-?	NR	3E-6	(Males only)	0.034	[NR] unit increase	Illumina [522636]	N
977	chr15	51456384	51456385	rs12898341	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q21.2	MIR4713HG	rs12898341-?	NA	4E-11		1.59	[1.12-2.06] unit decrease	Affymetrix [5541230] (imputed)	N
977	chr15	51464186	51464187	rs7176579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q21.2		rs7176579-A	NR	4E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
977	chr15	51477152	51477153	rs4551976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1	rs4551976-T	NR	6E-9		0.0189042	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
977	chr15	51487351	51487352	rs3759809	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs3759809-?	NR	9E-19		0.020846	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
977	chr15	51493018	51493019	rs7169770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1	rs7169770-A	NR	2E-10		0.0217607	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
977	chr15	51493567	51493568	rs12911748	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q21.2	NR	rs12911748-T	0.5221	1E-12		0.001535	[0.0011-0.002] unit decrease	Affymetrix [NR] (imputed)	N
977	chr15	51493966	51493967	rs11070841	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q21.2	TNFAIP8L3, CYP19A1	rs11070841-A	0.21	2E-13		7.37	z-score increase	Affymetrix [4314223] (imputed)	N
977	chr15	51494236	51494237	rs16964189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1	rs16964189-T	NR	2E-8		0.0224912	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
978	chr15	51513728	51513729	rs6493487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs6493487-G	NR	9E-13		0.0263081	[0.019-0.034] unit decrease	Affymetrix [323858] (imputed)	N
978	chr15	51513728	51513729	rs6493487	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	15q21.2	CYP19A1	rs6493487-G	0.09	8E-6	(AA-glucose response)	5.96	[3.35-8.57] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
978	chr15	51515378	51515379	rs60147032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	15q21.2		rs60147032-A	0.284593	1E-8		0.0195114	[0.013-0.026] unit increase	Illumina [13478948] (imputed)	N
978	chr15	51515455	51515455	rs151006058	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs151006058-GGAAT	0.271	4E-11	(men)	0.0893163	[0.063-0.116] unit increase	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51515455	51515455	rs151006058	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs151006058-GGAAT	0.271	3E-9		0.066367	[0.044-0.088] unit increase	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51516054	51516055	rs2899472	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q21.2	CYP19A1	rs2899472-C	0.74347	2E-28		0.0260339	[0.021-0.031] unit decrease	NR [13737936] (imputed)	N
978	chr15	51516054	51516055	rs2899472	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs2899472-?	NR	2E-60		0.0387427	[0.034-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
978	chr15	51516054	51516055	rs2899472	29325096	Eriksson AL	2018-01-09	J Clin Endocrinol Metab	Genetic Determinants of Circulating Estrogen Levels, and Evidence of a Causal Effect of Estradiol on Bone Density in Men.	Estrone levels	7,570 European ancestry men	NA	15q21.2	CYP19A1	rs2899472-A	0.25	6E-23		2.41	[1.94-2.88] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
978	chr15	51516054	51516055	rs2899472	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	15q21.2	CYP19A1	rs2899472-A	NR	2E-9	(Controls)			Illumina [498205]	N
978	chr15	51517596	51517597	rs8023263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs8023263-G	NR	3E-13		0.0234476	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
978	chr15	51519945	51519945	rs28892005	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	15q21.2	CYP19A1	rs28892005-A	0.35	1E-60		0.795	[0.774-0.817]	Affymetrix [7871717] (imputed)	N
978	chr15	51519945	51519945	rs28892005	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q21.2	NR	rs28892005-A	0.350644	2E-19		0.0281487	[0.022-0.034] unit increase	Affymetrix [16577313] (imputed)	N
978	chr15	51522209	51522210	rs146939415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.2		rs146939415-?	NR	4E-24				NR [~ 8900000] (imputed)	N
978	chr15	51524291	51524292	rs2414095	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q21.2	NR	rs2414095-A	0.3522	6E-10	(European)	0.0401	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
978	chr15	51524291	51524292	rs2414095	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	CYP19A1	rs2414095-A	0.31	7E-31	(Oestradiol)	0.08	[0.060-0.100] unit decrease	Illumina [709211]	N
978	chr15	51524291	51524292	rs2414095	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	CYP19A1	rs2414095-A	0.31	2E-16	(FSH)	0.11	[0.090-0.130] unit increase	Illumina [709211]	N
978	chr15	51525433	51525433	rs35397743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q21.2		rs35397743-AAC	NR	7E-15		0.013	[0.0097-0.0163] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
978	chr15	51527397	51527398	rs3784308	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.2	MIR4713HG	rs3784308-?		3E-8		0.026	[0.017-0.035] unit decrease	Illumina [31500000] (imputed)	N
978	chr15	51529264	51529265	rs3759811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs3759811-T	NR	5E-20		0.0280865	[0.022-0.034] unit decrease	Affymetrix [323123] (imputed)	N
978	chr15	51529349	51529354	rs10550124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q21.2	CYP19A1, RP11-108K3.1	rs10550124-G	0.602618	4E-10		0.014348996	[0.0099-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
978	chr15	51530096	51530097	rs17703883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q21.2	NR	rs17703883-C	0.25514400000000004	4E-27		0.0243257	[0.02-0.029] unit increase	Affymetrix [16583148] (imputed)	N
978	chr15	51530096	51530097	rs17703883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	15q21.2	NR	rs17703883-C	0.25526499999999996	8E-40		0.0442784	[0.037-0.051] unit increase	Affymetrix [16577424] (imputed)	N
978	chr15	51530096	51530097	rs17703883	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	15q21.2	NR	rs17703883-T	0.7627	7E-13		0.0149	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
978	chr15	51530166	51530167	rs726547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs726547-A	NR	1E-8		0.0424922	[0.028-0.057] unit decrease	Affymetrix [321114] (imputed)	N
978	chr15	51530494	51530495	rs16964211	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q21.2	CYP19A1	rs16964211-A	0.051	1E-15		0.057	[0.043-0.071] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
978	chr15	51530494	51530495	rs16964211	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q21.2	CYP19A1	rs16964211-A	0.05	2E-9		0.05	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
978	chr15	51531013	51531014	rs1865803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q21.2	NR	rs1865803-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
978	chr15	51532646	51532647	rs10519295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q21.2	CYP19A1, RP11-108K3.1	rs10519295-C	0.087295	7E-11		0.02592573	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
978	chr15	51532646	51532647	rs10519295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q21.2	CYP19A1, RP11-108K3.1	rs10519295-C	0.087319	2E-12		0.028056659	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
978	chr15	51533735	51533736	rs7173595	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	15q21.2	NR	rs7173595-T	0.64871	4E-72		0.0158526	[0.014-0.018] unit increase	Affymetrix [16582268] (imputed)	N
978	chr15	51533735	51533736	rs7173595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q21.2	NR	rs7173595-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
978	chr15	51533735	51533736	rs7173595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q21.2		rs7173595-?	NR	4E-13				NR [~ 8900000] (imputed)	N
978	chr15	51534054	51534055	rs7175531	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	15q21.2		rs7175531-T	NR	2E-12	(East Asian)			Affymetrix [NR] (imputed)	N
978	chr15	51534054	51534055	rs7175531	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q21.2	CYP19A1	rs7175531-T	0.349784	6E-25		0.0225037	[0.018-0.027] unit decrease	NR [13737936] (imputed)	N
978	chr15	51534546	51534547	rs727479	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Testosterone to estradiol ratio	5,696 individuals	NA	15q21.2		rs727479-A	NR	2E-9		0.115024	[0.077-0.153] unit decrease	Affymetrix [10900000] (imputed)	N
978	chr15	51534546	51534547	rs727479	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Testosterone to estradiol ratio	3,413 men	NA	15q21.2		rs727479-A	NR	4E-21		0.141224	[0.11-0.17] unit decrease	Affymetrix [10900000] (imputed)	N
978	chr15	51534546	51534547	rs727479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs727479-C	NR	7E-11		0.0213524	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
978	chr15	51534546	51534547	rs727479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs727479-C	NR	5E-11		0.021577	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
978	chr15	51534546	51534547	rs727479	29325096	Eriksson AL	2018-01-09	J Clin Endocrinol Metab	Genetic Determinants of Circulating Estrogen Levels, and Evidence of a Causal Effect of Estradiol on Bone Density in Men.	Estrone levels	7,570 European ancestry men	NA	15q21.2	CYP19A1	rs727479-A	0.65	2E-22		2.09	[1.66-2.52] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
978	chr15	51534546	51534547	rs727479	29325096	Eriksson AL	2018-01-09	J Clin Endocrinol Metab	Genetic Determinants of Circulating Estrogen Levels, and Evidence of a Causal Effect of Estradiol on Bone Density in Men.	Estradiol levels	11,097 European ancestry men	NA	15q21.2	CYP19A1	rs727479-A	0.63	8E-30		1.39	[1.15-1.63] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
978	chr15	51534546	51534547	rs727479	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	15q21.2	MIR4713, CYP19A1	rs727479-C	0.34	5E-7		0.107	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
978	chr15	51536140	51536141	rs10459592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs10459592-T	NR	2E-12		0.0218048	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
978	chr15	51537805	51537806	rs2414098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q21.2		rs2414098-C	NR	3E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
978	chr15	51537805	51537806	rs2414098	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q21.2	RP11-108K3.1, CYP19A1	rs2414098-T	NR	2E-9		0.0198236	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
978	chr15	51537805	51537806	rs2414098	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q21.2	CYP19A1	rs2414098-T	0.386095	1E-19		0.00206267	[0.0016-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
978	chr15	51537805	51537806	rs2414098	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q21.2	CYP19A1	rs2414098-T	0.39	6E-13		7.19	z-score increase	Affymetrix [4311822] (imputed)	N
978	chr15	51537805	51537806	rs2414098	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs2414098-?	NR	2E-75		0.0380203	[0.034-0.042] unit decrease	Affymetrix [20259828] (imputed)	N
978	chr15	51537805	51537806	rs2414098	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q21.2	CYP19A1	rs2414098-T	0.3898	2E-8		0.0329	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
978	chr15	51537805	51537806	rs2414098	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	15q21.2	CYP19A1	rs2414098-C	0.62	2E-13		1.18	[1.13-1.23]	Illumina [up to 2300000] (imputed)	N
978	chr15	51537805	51537806	rs2414098	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	15q21.2	CYP19A1	rs2414098-C	0.62	5E-13		1.17	[1.13-1.23]	Illumina [up to 2300000] (imputed)	N
978	chr15	51539367	51539368	rs12591359	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs12591359-A	0.407	6E-8	(men)	0.0652903	[0.042-0.089] unit decrease	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51539367	51539368	rs12591359	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs12591359-A	0.407	3E-10		0.0619644	[0.043-0.081] unit decrease	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51541300	51541301	rs35241865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q21.2	RP11-108K3.1, CYP19A1	rs35241865-C	NR	2E-10		0.0179444	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
978	chr15	51545400	51545401	rs28757157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.2		rs28757157-?	NR	5E-42				NR [~ 8900000] (imputed)	N
978	chr15	51545453	51545454	rs12907866	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.2	CYP19A1	rs12907866-A	0.84	4E-7	(AA)	6.06	[3.71-8.41] unit increase	Affymetrix, Illumina [NR] (imputed)	N
978	chr15	51548743	51548744	rs11636403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	15q21.2		rs11636403-T	0.348722	2E-12		0.0201014	[0.015-0.026] unit increase	Illumina [13479924] (imputed)	N
978	chr15	51548743	51548744	rs11636403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs11636403-?	NR	5E-57		0.0326117	[0.028-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
978	chr15	51548743	51548744	rs11636403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q21.2	CYP19A1	rs11636403-C	0.545726	1E-15	(men)	0.0403125	[0.03-0.051] unit decrease	NR [17166351] (imputed)	N
978	chr15	51548743	51548744	rs11636403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q21.2	CYP19A1	rs11636403-C	0.544269	7E-23		0.0346937	[0.028-0.041] unit decrease	NR [17166351] (imputed)	N
978	chr15	51548743	51548744	rs11636403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q21.2	CYP19A1	rs11636403-C	0.542997	2E-9	(women)	0.0297541	[0.021-0.039] unit decrease	NR [17166351] (imputed)	N
978	chr15	51549598	51549599	rs1008805	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.2	NR	rs1008805-A	0.5762959999999999	6E-9		0.00467901	[0.003-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
978	chr15	51549598	51549599	rs1008805	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.2	NR	rs1008805-A	0.5762959999999999	2E-6		0.00411445	[0.0023-0.006] unit increase	Affymetrix [16582965] (imputed)	N
978	chr15	51553908	51553909	rs17601876	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs17601876-G	0.49	5E-13		0.069436	[0.051-0.088] unit increase	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51553908	51553909	rs17601876	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Estradiol levels	4,191 European ancestry men, 2,607 European ancestry women	NA	15q21.2	NR	rs17601876-G	0.49	2E-9	(men)	0.07022449	[0.047-0.093] unit increase	Affymetrix [up to 8900000] (imputed)	N
978	chr15	51553908	51553909	rs17601876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.2		rs17601876-?	NR	3E-56				NR [~ 8900000] (imputed)	N
978	chr15	51553908	51553909	rs17601876	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	15q21.2	CYP19A1	rs17601876-G	0.47981399999999996	2E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
978	chr15	51553908	51553909	rs17601876	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	15q21.2	CYP19A1	rs17601876-G	0.48	3E-14		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 11700000] (imputed)	N
978	chr15	51553908	51553909	rs17601876	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	15q21.2	CYP19A1	rs17601876-A	0.5	4E-6		0.24	[0.14-0.34] unit increase	Illumina [8203257] (imputed)	N
978	chr15	51559844	51559845	rs28490942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q21.2		rs28490942-C	NR	6E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
978	chr15	51563252	51563253	rs200386728	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	15q21.2	NR	rs200386728-?	NR	4E-6		0.4215	[0.23-0.61] unit increase	Illumina [at least 560000] (imputed)	N
978	chr15	51569409	51569410	rs2305707	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q21.2	NR	rs2305707-?	NR	5E-8		0.03397925	[0.022-0.046] unit decrease	Illumina [34656550] (imputed)	N
978	chr15	51569409	51569410	rs2305707	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q21.2	CYP19A1	rs2305707-G	0.37	7E-7		0.06	[0.04-0.07] cm decrease	Illumina [420885]	N
978	chr15	51573532	51573533	rs3751599	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	15q21.2	CYP19A1	rs3751599-G	0.93	5E-10		0.187	[0.13-0.25] unit increase	Affymetrix [1532051] (imputed)	N
978	chr15	51576384	51576385	rs2445752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q21.2		rs2445752-G	0.408949	1E-40		0.0273437	[0.023-0.031] unit decrease	Illumina [13479295] (imputed)	N
978	chr15	51576384	51576385	rs2445752	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.2	CYP19A1	rs2445752-?	NR	1E-44		0.04056984	[0.035-0.046] unit decrease	Illumina [27896057] (imputed)	N
978	chr15	51576384	51576385	rs2445752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	15q21.2	CYP19A1	rs2445752-?	NR	5E-9		0.02633	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
978	chr15	51581073	51581074	rs936308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q21.2		rs936308-G	NR	1E-57		0.0248	[0.022-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
978	chr15	51591203	51591204	rs730154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	15q21.2		rs730154-C	0.409089	3E-10		0.0249747	[0.017-0.033] unit decrease	Illumina [13474352] (imputed)	N
978	chr15	51594971	51594972	rs2470152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q21.2	CYP19A1	rs2470152-A	NR	2E-8		0.0161791	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
978	chr15	51599682	51599683	rs10519302	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q21.2	NR	rs10519302-?	NR	2E-8		0.03682992	[0.024-0.05] unit decrease	Illumina [34656550] (imputed)	N
978	chr15	51599682	51599683	rs10519302	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q21.2	CYP19A1	rs10519302-A	0.68	3E-31		0.069	[0.057-0.081] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
978	chr15	51601140	51601141	rs28566535	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q21.2	CYP19A1	rs28566535-A	0.516	7E-10	(AA)	0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
978	chr15	51601140	51601141	rs28566535	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q21.2	CYP19A1	rs28566535-A		2E-18				Affymetrix, Illumina [17972582] (imputed)	N
978	chr15	51601140	51601141	rs28566535	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	15q21.2	CYP19A1	rs28566535-A	0.515	1E-6	(AA)	0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
978	chr15	51606709	51606710	rs3751591	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	15q21.2	NR	rs3751591-G	0.16693100000000005	7E-12		0.0077766	[0.0055-0.01] unit increase	Affymetrix [16582268] (imputed)	N
978	chr15	51613651	51613652	rs1004983	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	15q21.2	CYP19A1	rs1004983-A	0.3476	3E-6		1.09858	[1.05626-1.14259]	Illumina [4946503] (imputed)	N
978	chr15	51617707	51617708	rs2445762	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	CYP19A1	rs2445762-C	0.28	8E-28	(Oestradiol)	0.11	[0.090-0.130] unit increase	Illumina [709211]	N
978	chr15	51620079	51620080	rs55671949	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q21.2	CYP19A1	rs55671949-TA	0.932747	1E-6	(men)	0.0502576	[0.03-0.07] unit increase	NR [17166351] (imputed)	N
978	chr15	51620079	51620080	rs55671949	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q21.2	CYP19A1	rs55671949-TA	0.932713	8E-6		0.0299696	[0.017-0.043] unit increase	NR [17166351] (imputed)	N
978	chr15	51620982	51620983	rs7168331	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs7168331-?	NR	5E-16		0.0167653	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
978	chr15	51622456	51622457	rs77578670	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	15q21.2		rs77578670-C	0.75	5E-8		0.028	[0.018-0.038] L decrease	Affymetrix [NR] (imputed)	N
978	chr15	51623784	51623785	rs8025191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.2		rs8025191-?	NR	5E-25				NR [~ 8900000] (imputed)	N
978	chr15	51624338	51624339	rs1841128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q21.2		rs1841128-?	NR	7E-11				NR [~ 8900000] (imputed)	N
978	chr15	51634485	51634486	rs2446422	26686025	Hwang JY	2015-12-12	Bone	Meta analysis identifies a novel susceptibility locus associated with heel bone strength in the Korean population.	Calcaneal bone ultrasound measurement (speed of sound)	1,895 Korean ancestry individuals	7,263 Korean ancestry individuals	15q21.2	GLDN	rs2446422-T	0.67	2E-9		0.096	[0.065-0.127] unit increase	Illumina [NR] (imputed)	N
979	chr15	51644471	51644472	rs12441073	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q21.2	GLDN	rs12441073-T	0.729904	5E-20		0.019483	[0.015-0.024] unit decrease	NR [13737936] (imputed)	N
979	chr15	51653118	51653119	rs12148477	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	15q21.2	NR	rs12148477-?	0.21	7E-7	(FSH)			Illumina [709211]	N
979	chr15	51665816	51665817	rs2459400	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	15q21.2	GLDN	rs2459400-T	0.023	6E-6		0.33	[0.19-0.47] unit increase	Affymetrix [7435577] (imputed)	N
979	chr15	51682774	51682775	rs2470180	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.2	GLDN	rs2470180-?	NR	2E-10		0.019035436	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
979	chr15	51691278	51691279	rs112714914	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q21.2	NR	rs112714914-A	0.0228628	7E-10		0.12960467	[0.088-0.171] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
979	chr15	51691278	51691279	rs112714914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q21.2	Intergenic	rs112714914-A	0.963	5E-9	(MTAG)	0.0355	[0.024-0.047] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
979	chr15	51741055	51741056	rs3751585	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q21.2	NR	rs3751585-?	NR	4E-6	(male)	0.14907	[0.085-0.213] unit increase	Affymetrix [7794483] (imputed)	N
979	chr15	51741055	51741056	rs3751585	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q21.2	NR	rs3751585-?	NR	1E-7		0.13945	[0.088-0.191] unit increase	Affymetrix [7794483] (imputed)	N
979	chr15	51745276	51745277	rs4774590	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	15q21.2	DMXL2	rs4774590-A	0.35	3E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
979	chr15	51748145	51748146	rs2061425	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.2	Intergenic	rs2061425-T	0.7561	2E-8	(MTAG)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
979	chr15	51748609	51748610	rs3736485	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q21.2	NA	rs3736485-A	0.4564	4E-12		0.0118	[0.0085-0.0151] unit increase	NR [~ 27400000] (imputed)	N
979	chr15	51748609	51748610	rs3736485	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q21.2	NR	rs3736485-A	NR	7E-7		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
979	chr15	51748609	51748610	rs3736485	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q21.2	DMXL2	rs3736485-A	0.4757	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
979	chr15	51748609	51748610	rs3736485	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q21.2	DMXL2	rs3736485-A	0.4757	2E-6		0.0151	[0.0088-0.0214] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
979	chr15	51748609	51748610	rs3736485	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	15q21.2	NR	rs3736485-A	0.452684512992502	2E-10		0.017159417	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
979	chr15	51748609	51748610	rs3736485	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q21.2	DMXL2	rs3736485-A	0.461	5E-8		0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
979	chr15	51748609	51748610	rs3736485	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q21.2	DMXL2	rs3736485-A	0.454	7E-9	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
979	chr15	51748609	51748610	rs3736485	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q21.2	DMXL2	rs3736485-A	0.454	3E-6	(EA, women)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
979	chr15	51754450	51754451	rs6493498	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.2	NA	rs6493498-T	0.4465	5E-17		0.0137	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
979	chr15	51754450	51754451	rs6493498	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q21.2	NA	rs6493498-T	0.4465	5E-17		0.0137	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
980	chr15	51798412	51798413	rs149555148	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCG3	5,366 Icelandic ancestry individuals	NA	15q21.2		rs149555148-T	0.04668	3E-24		0.446263	[0.36-0.53] unit decrease	Illumina [7506463] (imputed)	N
980	chr15	51813648	51813649	rs145388160	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,420 European ancestry individuals	NA	15q21.2		rs145388160-A	0.9	7E-7		1.04	[0.63-1.45] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
980	chr15	51817197	51817198	rs7172979	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	15q21.2		rs7172979-?	NR	2E-8				NR [7857346] (imputed)	N
980	chr15	51817197	51817198	rs7172979	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q21.2	NR	rs7172979-T	NR	2E-11		6.675	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
980	chr15	51817197	51817198	rs7172979	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs7172979-?	NR	1E-7		5.32	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
980	chr15	51898057	51898058	rs9944241	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q21.2	DMXL2	rs9944241-T	0.515816	2E-9		0.0124164	[0.0083-0.0165] unit increase	Affymetrix [NR] (imputed)	N
980	chr15	51898057	51898058	rs9944241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.2		rs9944241-?	NR	3E-12				NR [~ 8900000] (imputed)	N
981	chr15	51926807	51926808	rs72730918	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q21.2	NR	rs72730918-T	NR	5E-11		6.581	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
981	chr15	51926807	51926808	rs72730918	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs72730918-?	NR	7E-8		5.393	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
981	chr15	51926807	51926808	rs72730918	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q21.2	DMXL2	rs72730918-T	NR	2E-8		0.027454171	[0.018-0.037] unit increase	Affymetrix [NR]	N
981	chr15	51932364	51932365	rs150336778	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.2	NR	rs150336778-A	0.01045	2E-8	(LRRK2)	0.04856	NR unit increase	Illumina [1671387] (imputed)	N
981	chr15	51934782	51934783	rs2252220	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q21.2	Intergenic	rs2252220-A	0.7579	6E-9	(MTAG)	0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
981	chr15	51959429	51959430	rs979259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.2	NR	rs979259-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
981	chr15	51964209	51964210	rs1456297	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCG3	5,366 Icelandic ancestry individuals	NA	15q21.2		rs1456297-C	0.1976	2E-111		0.499556	[0.46-0.54] unit decrease	Illumina [7506463] (imputed)	N
981	chr15	51964209	51964210	rs1456297	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q21.2	SCG3	rs1456297-A	0.7996875	4E-58	(SCG3, 7957_2_3)	0.47128016	[0.41-0.53] unit increase	Illumina [> 1000000] (imputed)	N
981	chr15	51964209	51964210	rs1456297	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q21.2	SCG3	rs1456297-A	NR	1E-8		0.019475047	[0.013-0.026] unit decrease	Affymetrix [NR]	N
981	chr15	51964864	51964865	rs1378892	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q21.2	SCG3	rs1378892-C	0.764	1E-68	(Secretogranin-3, SCG3.7957.2.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
981	chr15	51965185	51965186	rs11637716	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q21.2	NR	rs11637716-T	0.439364	3E-9		0.03762696	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
981	chr15	51965185	51965186	rs11637716	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q21.2	Intergenic	rs11637716-T	0.4423	2E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
981	chr15	51969667	51969668	rs17525472	20159242	Li X	2010-02-01	J Allergy Clin Immunol	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	15q21.2	SCG3	rs17525472-?	NR	2E-6				Illumina [292443]	N
981	chr15	51975607	51975608	rs2305710	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q21.2	NR	rs2305710-A	0.032	2E-13	(Secretogranin-3, SCG3.7957.2.3)	0.52	[0.38-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
981	chr15	51985563	51985564	rs2606146	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q21.2	NR	rs2606146-T	NR	3E-8		5.532	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
981	chr15	51990562	51990563	rs74015707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q21.2	NR	rs74015707-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
981	chr15	52011003	52011004	rs8035173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q21.2	SCG3	rs8035173-G	0.431769	1E-10		0.014671708	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
981	chr15	52017344	52017345	rs2414116	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	15q21.2	NR	rs2414116-A	0.461564	3E-6		1.0729614	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
981	chr15	52035124	52035125	rs11632106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.2	NR	rs11632106-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
982	chr15	52057939	52057940	rs17610835	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs17610835-?	NR	1E-7		5.335	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
982	chr15	52064375	52064376	rs8025619	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q21.2	TMOD2	rs8025619-T	NR	9E-9		0.04766016	[0.031-0.064] unit increase	Affymetrix [NR]	N
982	chr15	52080802	52080803	rs7182917	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q21.2	TMOD2	rs7182917-T	0.549911	3E-10		0.00873699	[0.006-0.0115] unit increase	Affymetrix [12370749]	N
982	chr15	52153352	52153353	rs2570249	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	15q21.2	NR	rs2570249-?		5E-6	(African)			Illumina [~ 5190000] (imputed)	N
983	chr15	52196829	52196830	rs1035738	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q21.2	NR	rs1035738-C	0.0218688	5E-11		0.1413456	[0.099-0.183] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
983	chr15	52196829	52196830	rs1035738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q21.2	Intergenic	rs1035738-T	0.0357	3E-11		0.0509	[0.036-0.066] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
983	chr15	52196829	52196830	rs1035738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs1035738-?	NR	5E-8		5.447	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
983	chr15	52201630	52201631	rs2570218	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	15q21.2	NR	rs2570218-?		5E-6	(African)			Illumina [~ 5190000] (imputed)	N
983	chr15	52226908	52226908	rs563857745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q21.2		rs563857745-CAAAAAA	NR	6E-9		0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
983	chr15	52230691	52230692	rs2554341	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	15q21.2	NR	rs2554341-?		6E-6	(African)			Illumina [~ 5190000] (imputed)	N
983	chr15	52234531	52234532	rs2554321	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	15q21.2	NR	rs2554321-?		6E-6	(African)			Illumina [~ 5190000] (imputed)	N
983	chr15	52234843	52234844	rs2593200	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.2		rs2593200-C	0.42	9E-17		8.32	z score increase	Affymetrix [9061022] (imputed)	N
983	chr15	52255119	52255120	rs2593204	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q21.2		rs2593204-G	0.44	3E-9		5.91	z score increase	Affymetrix [9061022] (imputed)	N
983	chr15	52255119	52255120	rs2593204	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q21.2	NR	rs2593204-G	0.4196	1E-9				NR [9056863] (imputed)	N
983	chr15	52260106	52260107	rs117632017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.2	NR	rs117632017-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
983	chr15	52264093	52264094	rs17612102	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	15q21.2	LEO1, MAPK6	rs17612102-T	0.4067	3E-8		0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
984	chr15	52340765	52340766	rs62015197	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	15q21.2	MAPK6	rs62015197-?		8E-7		0.6263	[NR] unit decrease	Affymetrix [NR] (imputed)	N
984	chr15	52348448	52348449	rs72732974	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.2	NR	rs72732974-C	0.917129	7E-11		0.0264328	[0.018-0.034] unit decrease	NR [NR]	N
984	chr15	52351912	52351913	rs16964720	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.2	NR	rs16964720-?	NR	1E-26				Affymetrix [NR]	N
984	chr15	52371744	52371745	rs72732980	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.2	NR	rs72732980-?		6E-6				Illumina [4322238] (imputed)	N
984	chr15	52379876	52379877	rs190878891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q21.2	CTD-2184D3.5	rs190878891-A	0.9948	8E-6		0.4362	[0.24-0.63] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
984	chr15	52379876	52379877	rs190878891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	15q21.2	CTD-2184D3.5	rs190878891-A	0.9949	3E-6		0.435	[0.25-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
984	chr15	52382476	52382477	rs72732986	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q21.2		rs72732986-?	NR	8E-11		0.0247911	[0.017-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
984	chr15	52426773	52426774	rs76134575	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q21.2		rs76134575-G	0.088318	5E-6		0.055014	[0.031-0.079] unit increase	Affymetrix [15580782] (imputed)	N
985	chr15	52442975	52442976	rs17612706	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.2	NR	rs17612706-?	NR	2E-7		5.239	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
985	chr15	52444832	52444832	rs578194564	31173346	Wang S	2019-06-27	Int J Cancer	Germline variants and somatic mutation signatures of breast cancer across populations of African and European ancestry in the US and Nigeria.	Breast cancer somatic mutation signature APOBEC C>T	974 European, African American and Asian ancestry individuals	NA	15q21.2		rs578194564-?	NR	1E-6				Affymetrix [7177790] (imputed)	N
985	chr15	52444832	52444832	rs578194564	31173346	Wang S	2019-06-27	Int J Cancer	Germline variants and somatic mutation signatures of breast cancer across populations of African and European ancestry in the US and Nigeria.	Breast cancer somatic mutation signature APOBEC C>G	974 European, African American and Asian ancestry individuals	NA	15q21.2		rs578194564-?	NR	1E-6				Affymetrix [7177790] (imputed)	N
985	chr15	52464789	52464790	rs149760119	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Anxiety x vitamin D PRS interaction (COJO adjusted)	21,807 European ancestry cases, 86,502 European ancestry controls	NA	15q21.2		rs149760119-?	NR	4E-8		0.22	[0.14-0.3] unit decrease	Affymetrix [NR] (imputed)	N
985	chr15	52467545	52467546	rs8038456	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	15q21.2		rs8038456-G	0.66	4E-6		1.37	[1.19-1.56]	Illumina [10258281] (imputed)	N
985	chr15	52504035	52504036	rs17650440	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	15q21.2	MYO5C	rs17650440-?		6E-6	(SG)	2.09	[1.23-2.95] unit increase	Illumina [693128]	N
985	chr15	52533065	52533066	rs79400013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	15q21.2	NR	rs79400013-A	NR	3E-9		0.0487	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr15	52534343	52534344	rs3751631	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	15q21.2	MYO5C	rs3751631-A	0.1	5E-6		1.5494	[NR]	Illumina [421909] (imputed)	N
986	chr15	52580535	52580536	rs113338370	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q21.2	MYO5C	rs113338370-A	0.9986	5E-6		1.6499	[0.94-2.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
986	chr15	52587739	52587740	rs149336329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q21.2		rs149336329-T	0.06304305	3E-10		0.12393504	[0.085-0.163] unit decrease	Illumina [13429769] (imputed)	N
986	chr15	52587739	52587740	rs149336329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q21.2		rs149336329-T	NR	8E-13		0.1063	[0.077-0.135] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
986	chr15	52587739	52587740	rs149336329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q21.2		rs149336329-T	NR	3E-21		0.0444	[0.035-0.054] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
986	chr15	52587739	52587740	rs149336329	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q21.2	NR	rs149336329-G	0.9566	3E-18		0.0869	[0.067-0.107] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
986	chr15	52587739	52587740	rs149336329	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q21.2	MYO5C	rs149336329-G	0.949	2E-9		1.11	[1.07-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
986	chr15	52588721	52588722	rs74804697	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q21.2	NR	rs74804697-G	0.0434	5E-12		0.0837	[0.06-0.107] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
986	chr15	52631990	52631991	rs752864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	15q21.2	NR	rs752864-?	NR	5E-6		0.0181	[0.01-0.026] unit decrease	Illumina [at least 560000] (imputed)	N
986	chr15	52638971	52638972	rs12593477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.2	NR	rs12593477-T	0.153508	7E-13				Affymetrix, Illumina [17210439] (imputed)	N
986	chr15	52638971	52638972	rs12593477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q21.2	NR	rs12593477-T	0.148775	4E-14		0.021198	[0.016-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
986	chr15	52642198	52642199	rs3794568	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q21.2		rs3794568-A	0.16593	3E-6		0.042488	[0.025-0.06] unit increase	Affymetrix [15580782] (imputed)	N
986	chr15	52667449	52667450	rs3816449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q21.2	MYO5A	rs3816449-C	0.168558	7E-10		0.018553847	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
987	chr15	52694916	52694917	rs191884522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.2	NR	rs191884522-C	0.998188	1E-21		0.0992526	[0.079-0.12] unit increase	Affymetrix [16582909] (imputed)	N
987	chr15	52694916	52694917	rs191884522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.2	NR	rs191884522-C	0.998113	2E-14		0.117303	[0.089-0.145] unit increase	Affymetrix [16582621] (imputed)	N
987	chr15	52694916	52694917	rs191884522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.2	NR	rs191884522-C	0.998188	6E-23		0.113425	[0.09-0.137] unit increase	Affymetrix [16582965] (imputed)	N
987	chr15	52694916	52694917	rs191884522	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.2	NR	rs191884522-C	0.998113	5E-17		0.129764	[0.1-0.16] unit increase	Affymetrix [16582614] (imputed)	N
987	chr15	52734388	52734389	rs140357247	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q21.2	NR	rs140357247-C	0.998162	7E-10		0.241482	[0.17-0.32] unit increase	Affymetrix [16577313] (imputed)	N
987	chr15	52773022	52773023	rs2222656	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	15q21.2	MYO5A	rs2222656-A		2E-6		0.12	[0.07-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
987	chr15	52774923	52774924	rs1693493	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q21.2		rs1693493-T	0.76367	2E-6		0.03787	[0.022-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
988	chr15	52886961	52886962	rs4776059	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q21.2	NR	rs4776059-T	NR	4E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
988	chr15	52904045	52904046	rs4776063	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q21.3	NR	rs4776063-C	NR	6E-6	(LME model)	0.5229	[0.3-0.75] unit increase	NR [NR] (imputed)	N
988	chr15	52922889	52922890	rs12595161	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	15q21.3	KIAA1370	rs12595161-A	0.0511	5E-6	(Ordinal II)	0.4178	[0.24-0.6] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
988	chr15	52933261	52933262	rs2899492	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q21.3	NR	rs2899492-C	NR	6E-7	(GEE model)	0.62012	[0.38-0.86] unit increase	NR [NR] (imputed)	N
989	chr15	52977201	52977202	rs183754410	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Dysgonomonadaceae abundance in stool	5,959 Finnish ancestry individuals	NA	15q21.3		rs183754410-T	0.0191984	3E-8		0.114535	[0.074-0.155] unit increase	Illumina [7980478] (imputed)	N
989	chr15	53001537	53001538	rs2414178	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.3	FAM214A	rs2414178-T	0.774557	3E-8		0.0129245	[0.0084-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
989	chr15	53006353	53006354	rs182702653	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q21.3	ARPP19	rs182702653-G	0.810625	5E-6	(ARPP19, 4963_19_1)	0.14223371	[0.081-0.203] unit increase	Illumina [> 1000000] (imputed)	N
989	chr15	53013474	53013475	rs6493575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q21.3	NR	rs6493575-T	0.395673	2E-10		0.01218	[0.0084-0.0159] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
989	chr15	53016516	53016517	rs77255942	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	15q21.3	NR	rs77255942-T	0.03	3E-8		1.19	NR	NR [8853336] (imputed)	N
989	chr15	53022587	53022588	rs72740245	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q21.3	NR	rs72740245-?	NR	9E-6		4.451	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
989	chr15	53027916	53027917	rs7182195	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	15q21.3	NR	rs7182195-C	NR	5E-7		0.344	[0.21-0.48] unit decrease	Illumina [6319684] (imputed)	N
989	chr15	53033918	53033919	rs35519714	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals, 1,420 European ancestry individuals	NA	15q21.3		rs35519714-T	0.07	2E-7		0.86	[0.55-1.17] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
989	chr15	53044001	53044002	rs10851523	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q21.3	NA	rs10851523-C	0.2742	2E-9		0.0118	[0.0079-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
989	chr15	53062067	53062068	rs149663666	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.3	NR	rs149663666-T	0.991338	6E-27		0.0474637	[0.038-0.057] unit increase	Affymetrix [16582909] (imputed)	N
989	chr15	53062067	53062068	rs149663666	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.3	NR	rs149663666-T	0.99131	1E-15		0.0482331	[0.036-0.061] unit increase	Affymetrix [16582621] (imputed)	N
989	chr15	53062067	53062068	rs149663666	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.3	NR	rs149663666-T	0.991338	1E-18		0.044729	[0.034-0.055] unit increase	Affymetrix [16582965] (imputed)	N
989	chr15	53062067	53062068	rs149663666	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.3	NR	rs149663666-T	0.99131	1E-12		0.0470262	[0.033-0.061] unit increase	Affymetrix [16582614] (imputed)	N
989	chr15	53070588	53070589	rs62023486	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q21.3	ONECUT1	rs62023486-A	0.896573	4E-8		0.022694	[0.015-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
989	chr15	53072672	53072673	rs10518694	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs10518694-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
989	chr15	53073083	53073084	rs2460	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	15q21.3	NR	rs2460-?		5E-10		0.0152938	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
989	chr15	53076369	53076370	rs79101008	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.3	NR	rs79101008-C	0.889056	2E-17		0.0274074	[0.021-0.034] unit increase	NR [NR]	N
989	chr15	53076867	53076868	rs148213707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs148213707-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
989	chr15	53082480	53082481	rs2456523	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	15q21.3		rs2456523-G	0.26	1E-22		0.021	nmol/L decrease	NR [NR] (imputed)	N
989	chr15	53082480	53082481	rs2456523	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q21.3		rs2456523-G	0.26	5E-11				NR [NR] (imputed)	N
989	chr15	53082480	53082481	rs2456523	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q21.3		rs2456523-G	0.26	1E-11		0.011	% increase	NR [NR] (imputed)	N
990	chr15	53091174	53091175	rs16965171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q21.3		rs16965171-T	NR	2E-8		0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
990	chr15	53091552	53091553	rs2456530	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q21.3	ONECUT1	rs2456530-T	0.1272	5E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
990	chr15	53099305	53099306	rs75332279	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q21.3	NR	rs75332279-C	0.0964	5E-12		0.0559	[0.04-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
990	chr15	53115667	53115668	rs11629906	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	15q21.3		rs11629906-C	NR	1E-6		4.4295	[2.69-6.17] unit increase	Illumina [NR] (imputed)	N
990	chr15	53124818	53124819	rs62023507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs62023507-G	NR	2E-33		0.061	[0.051-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
990	chr15	53124818	53124819	rs62023507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q21.3	NR	rs62023507-G	NR	9E-12		0.0329	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
990	chr15	53132921	53132922	rs16965217	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs16965217-C	0.01394	9E-10	(PRDX3)	1.705	NR unit increase	Illumina [1671387] (imputed)	N
990	chr15	53132921	53132922	rs16965217	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs16965217-?	NR	8E-13				Affymetrix [NR]	N
990	chr15	53142072	53142073	rs16965224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs16965224-G	0.01045	3E-9	(PRDX3)	1.844	NR unit increase	Illumina [1671387] (imputed)	N
990	chr15	53153410	53153411	rs74012806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs74012806-T	0.01916	8E-9	(PRDX3)	1.339	NR unit increase	Illumina [1671387] (imputed)	N
990	chr15	53156671	53156672	rs2247401	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q21.3	ONECUT1	rs2247401-G	0.733175	5E-8		0.00852417	[0.0055-0.0116] unit decrease	Affymetrix [12370749]	N
990	chr15	53163602	53163603	rs80243702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.3		rs80243702-?	NR	1E-9				NR [~ 8900000] (imputed)	N
990	chr15	53166408	53166409	rs2120445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs2120445-A	NR	3E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
990	chr15	53166714	53166715	rs2456519	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	15q21.3		rs2456519-?	NR	2E-6		0.95485294	[0.936888295827441-0.973161996087072]	Illumina [7827597] (imputed)	N
990	chr15	53172691	53172692	rs2440331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs2440331-C	NR	3E-11		0.0298	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
990	chr15	53203300	53203301	rs2414208	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.3	RPSAP55, EEF1A1P22	rs2414208-G	0.0040	2E-6	(BMR RQ)	0.03	[NR] unit increase	Illumina [899892]	N
991	chr15	53279377	53279378	rs719714	22126837	LeBlanc M	2011-11-28	J Psychiatr Res	Genome-wide study identifies PTPRO and WDR72 and FOXQ1-SUMO1P1 interaction associated with neurocognitive function.	Cognitive function	190 European ancestry schizophrenia cases, 157 European ancestry  bipolar disorder cases, 353 European ancestry controls	NA	15q21.3	WDR72	rs719714-?	NR	4E-8		9.45	[6.10-12.80] unit increase	Affymetrix [550291]	N
991	chr15	53287617	53287618	rs1159774	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	1,068 Japanese ancestry individuals	NA	15q21.3	intergenic	rs1159774-T	0.39	3E-6		0.0201	[0.012-0.029] unit increase	Illumina [6380737] (imputed)	N
991	chr15	53321118	53321119	rs17544568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs17544568-A	NR	9E-12		0.0558	[0.04-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr15	53327791	53327792	rs181598957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.3	NR	rs181598957-A	0.017900999999999945	4E-13		0.0238642	[0.017-0.031] unit increase	Affymetrix [16582909] (imputed)	N
991	chr15	53327791	53327792	rs181598957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.3	NR	rs181598957-A	0.017900999999999945	1E-9		0.0225221	[0.015-0.03] unit increase	Affymetrix [16582965] (imputed)	N
991	chr15	53344640	53344641	rs28790308	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	15q21.3	ONECUT1	rs28790308-G	0.25	4E-6		0.1	[0.061-0.139] unit decrease	Illumina [~ 6300000] (imputed)	N
992	chr15	53421403	53421404	rs17659514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs17659514-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
992	chr15	53422017	53422018	rs518039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.3		rs518039-?	NR	3E-8				NR [~ 8900000] (imputed)	N
992	chr15	53427154	53427155	rs28465175	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q21.3	ONECUT1	rs28465175-A	0.93018	3E-8		0.0150381	[0.0097-0.0203] unit increase	Affymetrix [12370749]	N
992	chr15	53457525	53457526	rs1877139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q21.3		rs1877139-A	NR	1E-8		0.0281	[0.018-0.038] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
992	chr15	53457525	53457526	rs1877139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs1877139-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
992	chr15	53464219	53464220	rs2174866	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	15q21.3	intergenic	rs2174866-T	NR	9E-7		1.19	[NR]	NR [352000]	N
992	chr15	53473989	53473990	rs8024806	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.3	NA	rs8024806-T	0.9368	7E-13		0.0254	[0.019-0.032] unit increase	NR [~ 27400000] (imputed)	N
992	chr15	53474341	53474342	rs1402113	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs1402113-?	NR	3E-6				Affymetrix [NR]	N
993	chr15	53527493	53527494	rs59373856	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	NR	rs59373856-?		9E-6				Illumina [4322238] (imputed)	N
993	chr15	53542744	53542745	rs529413	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q21.3	Intergenic	rs529413-C	NR	6E-6		0.0207203	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
994	chr15	53656844	53656845	rs272801	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	ONECUT1	rs272801-?	NR	7E-6	(TAG 46:0)	4.580998	[2.58-6.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
994	chr15	53675193	53675194	rs113401670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs113401670-T	NR	3E-25		0.0963	[0.078-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
994	chr15	53675193	53675194	rs113401670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q21.3	NR	rs113401670-T	NR	2E-12		0.062	[0.045-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
994	chr15	53725111	53725112	rs12442008	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	15q21.3		rs12442008-T	0.2521	3E-8		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
994	chr15	53725111	53725112	rs12442008	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q21.3	ONECUT1, WDR72	rs12442008-T	0.2593	5E-11		1.02891		Affymetrix [11880941] (imputed)	N
994	chr15	53728153	53728154	rs1189402	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	15q21.3	ONECUT1	rs1189402-A	0.62	7E-9	(BMI-adjusted)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
994	chr15	53728153	53728154	rs1189402	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	15q21.3	ONECUT1	rs1189402-A	0.62	4E-9		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
994	chr15	53728709	53728710	rs149624078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q21.3		rs149624078-T	NR	4E-10		0.0676	[0.046-0.089] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
994	chr15	53728709	53728710	rs149624078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q21.3		rs149624078-T	NR	3E-35		0.1301	[0.11-0.15] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
994	chr15	53728709	53728710	rs149624078	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q21.3	NR	rs149624078-T	NR	1E-9		0.0674	[0.046-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
994	chr15	53728709	53728710	rs149624078	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.3	NR	rs149624078-C	0.986262	1E-91		0.0960244	[0.086-0.106] unit increase	Affymetrix [16582621] (imputed)	N
994	chr15	53728709	53728710	rs149624078	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.3	NR	rs149624078-C	0.986262	5E-81		0.0975763	[0.087-0.108] unit increase	Affymetrix [16582614] (imputed)	N
994	chr15	53728709	53728710	rs149624078	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q21.3	NR	rs149624078-T	0.014013999999999971	3E-12		0.0791193	[0.057-0.101] unit increase	Affymetrix [16585745] (imputed)	N
994	chr15	53732334	53732335	rs143369870	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	15q21.3		rs143369870-C	0.972352	8E-6		0.0256721	[0.014-0.037] unit decrease	Illumina [13900000] (imputed)	N
994	chr15	53738848	53738849	rs8040040	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.3	NR	rs8040040-C	0.551227	3E-19		0.0179421	[0.014-0.022] unit increase	NR [NR]	N
994	chr15	53739425	53739426	rs79391862	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	15q21.3	NR	rs79391862-C	0.01	3E-12		1.38	NR	NR [8853336] (imputed)	N
994	chr15	53739425	53739426	rs79391862	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.3	LINC02490, WDR72	rs79391862-?		1E-16		0.1672	[0.13-0.21] unit decrease	Illumina [31500000] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q21.3	NR	rs79391862-A	0.986175	9E-11		0.0542363	[0.038-0.071] unit increase	Affymetrix [15000001]	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q21.3	NR	rs79391862-A	0.986046	2E-14		0.0407221	[0.03-0.052] unit increase	Affymetrix [16578495] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q21.3	NR	rs79391862-A	0.986175	6E-38		0.157273	[0.13-0.18] unit increase	Affymetrix [16577313] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.3	NR	rs79391862-A	0.98604	2E-121		0.0824289	[0.075-0.09] unit increase	Affymetrix [16582909] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q21.3	NR	rs79391862-A	0.985902	2E-46		0.0730502	[0.063-0.083] unit increase	Affymetrix [16585854] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.3	NR	rs79391862-A	0.98604	4E-99		0.083002	[0.075-0.091] unit increase	Affymetrix [16582965] (imputed)	N
994	chr15	53739425	53739426	rs79391862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q21.3	NR	rs79391862-A	0.985902	9E-35		0.0737538	[0.062-0.086] unit increase	Affymetrix [16585866] (imputed)	N
995	chr15	53741611	53741612	rs79237700	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	15q21.3	LOC105370826, WDR72	rs79237700-C	0.04	2E-6		1.82	[1.42-2.33]	Illumina [8744746] (imputed)	N
995	chr15	53741611	53741612	rs79237700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q21.3	NR	rs79237700-T	0.961839	8E-11		0.020348	[0.014-0.027] unit increase	Affymetrix [16585854] (imputed)	N
995	chr15	53741611	53741612	rs79237700	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q21.3	NR	rs79237700-T	0.961839	6E-8		0.0193031	[0.012-0.027] unit increase	Affymetrix [16585866] (imputed)	N
995	chr15	53741825	53741826	rs8027064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q21.3	NR	rs8027064-A	0.03504200000000002	2E-15		0.0265578	[0.02-0.033] unit increase	Affymetrix [16585854] (imputed)	N
995	chr15	53741825	53741826	rs8027064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q21.3	NR	rs8027064-A	0.03504200000000002	2E-11		0.0259629	[0.018-0.034] unit increase	Affymetrix [16585866] (imputed)	N
995	chr15	53746168	53746169	rs8030357	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.3	NR	rs8030357-G	0.284617	9E-17		0.0102554	[0.0077-0.0128] unit increase	Affymetrix [16582621] (imputed)	N
995	chr15	53746168	53746169	rs8030357	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.3	NR	rs8030357-G	0.284617	2E-15		0.0103058	[0.0076-0.013] unit increase	Affymetrix [16582614] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.3	NR	rs528350911-C	0.993634	2E-22		0.0534402	[0.042-0.065] unit increase	Affymetrix [16582909] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q21.3	NR	rs528350911-C	0.993629	4E-13		0.057296	[0.041-0.074] unit increase	Affymetrix [16585854] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q21.3	NR	rs528350911-C	0.99364	5E-10		0.0429262	[0.028-0.058] unit increase	Affymetrix [16582621] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.3	NR	rs528350911-C	0.993634	6E-19		0.0535565	[0.041-0.066] unit increase	Affymetrix [16582965] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q21.3	NR	rs528350911-C	0.993629	8E-11		0.0583329	[0.04-0.077] unit increase	Affymetrix [16585866] (imputed)	N
995	chr15	53747227	53747228	rs528350911	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q21.3	NR	rs528350911-C	0.99364	1E-8		0.0421259	[0.026-0.059] unit increase	Affymetrix [16582614] (imputed)	N
995	chr15	53747227	53747228	rs528350911	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q21.3	WDR72	rs528350911-G	0.0068	2E-8		1.27	[1.17-1.38]	Affymetrix, Illumina [~ 27000000] (imputed)	N
995	chr15	53759610	53759611	rs72743115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs72743115-C	NR	1E-31		0.0745	[0.062-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr15	53759610	53759611	rs72743115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q21.3	NR	rs72743115-C	NR	3E-15		0.0479	[0.036-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr15	53759610	53759611	rs72743115	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.3	NR	rs72743115-A	0.958229	5E-21		0.047004	[0.037-0.057] unit increase	NR [NR]	N
995	chr15	53767885	53767886	rs1189395	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q21.3	NR	rs1189395-A	NR	4E-11		0.0186	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr15	53767972	53767973	rs5029718	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q21.3	NR	rs5029718-C	0.00660000000000005	2E-12		0.0350883	[0.025-0.045] unit increase	Affymetrix [16582909] (imputed)	N
995	chr15	53767972	53767973	rs5029718	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q21.3	NR	rs5029718-C	0.00660000000000005	8E-11		0.036101	[0.025-0.048] unit increase	Affymetrix [16582965] (imputed)	N
995	chr15	53770846	53770847	rs17712720	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs17712720-?	NR	7E-41				Affymetrix [NR]	N
995	chr15	53805824	53805825	rs7168365	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	15q21.3	WDR72	rs7168365-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
995	chr15	53823411	53823412	rs10518726	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q21.3	NR	rs10518726-C	0.359	1E-10		0.00727556	[0.0051-0.0095] unit increase	NR [9732723] (imputed)	N
995	chr15	53823411	53823412	rs10518726	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q21.3	NR	rs10518726-C	0.353	4E-9		0.00901298	[0.006-0.012] unit decrease	NR [9732723] (imputed)	N
995	chr15	53847229	53847230	rs58156072	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum mid-anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	WDR72	rs58156072-?		1E-6				Illumina [4322238] (imputed)	N
996	chr15	53876169	53876171	rs3081219	31482010	Liu C	2019-08-29	NPJ Genom Med	Genome-wide association study for proliferative diabetic retinopathy in Africans.	Proliferative diabetic retinopathy	64 African ancestry cases, 227 African ancestry controls	19 African American cases, 50 African American controls	15q21.3	WDR72	rs3081219-C	0.13	1E-9		1.29	[1.19-1.41]	Affymetrix, Illumina [18433741] (imputed)	N
996	chr15	53880803	53880804	rs16966245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.3	NR	rs16966245-C	NR	3E-24		0.0247	[0.02-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
996	chr15	53880803	53880804	rs16966245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q21.3	NR	rs16966245-C	NR	3E-18		0.0213	[0.017-0.026] unit increase	Affymetrix [9000000] (imputed)	N
996	chr15	53880803	53880804	rs16966245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.3	NR	rs16966245-C	NR	4E-24		0.0247	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
996	chr15	53882441	53882442	rs1906436	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	15q21.3	WDR72	rs1906436-T	0.633	2E-9		0.559	[0.37-0.74] unit increase	Affymetrix [NR] (imputed)	N
996	chr15	53899305	53899306	rs7178691	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	15q21.3	NR	rs7178691-A	0.32	3E-6		0.82	unit decrease	Illumina [8591557] (imputed)	N
996	chr15	53902625	53902626	rs7169329	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs7169329-G	0.592	7E-7		0.13	[-0.04052-0.30052] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
996	chr15	53907947	53907948	rs17730281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	15q21.3		rs17730281-A	0.395014	2E-36		0.0364465	[0.031-0.042] unit decrease	Illumina [13478778] (imputed)	N
996	chr15	53907947	53907948	rs17730281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q21.3		rs17730281-A	NR	3E-35		0.0265	[0.022-0.031] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
996	chr15	53907947	53907948	rs17730281	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	15q21.3	WDR72	rs17730281-G	0.71	1E-18		1.0816658	[1.06-1.1]	Affymetrix, Illumina [9585923] (imputed)	N
996	chr15	53907947	53907948	rs17730281	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	15q21.3	WDR72	rs17730281-A	0.293	2E-24		0.0078	[0.0062-0.0094] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
996	chr15	53907947	53907948	rs17730281	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q21.3	WDR72	rs17730281-G	0.6832	1E-39		13.182	NR z score decrease	Illumina [26237160] (imputed)	N
996	chr15	53907947	53907948	rs17730281	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	15q21.3	WDR72	rs17730281-G	0.58	3E-11		0.0051	[0.0035-0.0067] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
996	chr15	53915765	53915766	rs62005941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	15q21.3		rs62005941-G	0.390922	3E-31		0.0399635	[0.033-0.047] unit decrease	Illumina [13478792] (imputed)	N
996	chr15	53915765	53915766	rs62005941	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs62005941-?	NR	3E-36				Affymetrix, Illumina [at least 5248638] (imputed)	N
996	chr15	53919225	53919226	rs35255404	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs35255404-G	0.705	8E-42		0.603	[0.41-0.79] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
996	chr15	53921388	53921388	rs5812700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	15q21.3		rs5812700-C	0.745763	1E-12		0.0293053	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
996	chr15	53921388	53921388	rs5812700	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q21.3	WDR72	rs5812700-CGA	0.238	9E-18		0.547	[0.42-0.67] unit increase	Affymetrix [NR] (imputed)	N
996	chr15	53931102	53931103	rs1906412	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	15q21.3	WDR72	rs1906412-?	NR	2E-30		0.04201	[0.035-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
996	chr15	53931307	53931308	rs35487869	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	15q21.3	WDR72	rs35487869-?	NR	2E-10		0.0284	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
996	chr15	53939041	53939042	rs10518732	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	15q21.3	WDR72	rs10518732-?	NR	5E-37		0.04829	[0.041-0.056] unit increase novel	Illumina [6108953] (imputed)	N
996	chr15	53939041	53939042	rs10518732	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	15q21.3	WDR72	rs10518732-?	NR	3E-34		0.0452	[0.038-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
996	chr15	53940306	53940307	rs10518733	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	15q21.3	WDR72	rs10518733-C	0.4	2E-8	(sCr)	0.068	[0.044-0.092] unit decrease	Illumina [561583]	N
996	chr15	53942927	53942928	rs17730436	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	15q21.3	WDR72	rs17730436-T	0.60	1E-13		0.005	[0.0036-0.0064] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
996	chr15	53942927	53942928	rs17730436	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	15q21.3	WDR72	rs17730436-T	0.60	6E-13		0.0055	[0.0039-0.0071] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
996	chr15	53943317	53943318	rs7495833	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	15q21.3	WDR72	rs7495833-?	NR	3E-12		0.0285	[0.021-0.036] unit increase novel	Illumina [6108953] (imputed)	N
996	chr15	53943317	53943318	rs7495833	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	15q21.3	WDR72	rs7495833-?	NR	3E-17		0.03533	[0.027-0.044] unit decrease	Illumina [6108953] (imputed)	N
996	chr15	53946592	53946593	rs491567	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	15q21.3	WDR72	rs491567-A	NR	1E-12		0.0078	[0.0056-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
996	chr15	53946592	53946593	rs491567	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	15q21.3	WDR72	rs491567-A	0.78	3E-15	(EA)	0.0084	[0.0064-0.0104] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
996	chr15	53946592	53946593	rs491567	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q21.3	WDR72	rs491567-C	0.22	3E-13	(eGFRcrea)	0.01	[0.005-0.013] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
996	chr15	53949333	53949334	rs690090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q21.3		rs690090-G	0.461387	4E-10		0.0127082	[0.0087-0.0167] unit decrease	Illumina [13479295] (imputed)	N
996	chr15	53950577	53950578	rs690428	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,419 European ancestry cases, 169,087 European ancestry controls	NA	15q21.3	WDR72	rs690428-A	NR	4E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [> 8000000] (imputed)	N
996	chr15	53950577	53950578	rs690428	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q21.3	WDR72	rs690428-A	0.6653	3E-42		0.0039	[0.0033-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
996	chr15	53950577	53950578	rs690428	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	15q21.3	WDR72	rs690428-A	0.5215	2E-16		0.0055	[0.0041-0.0069] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
996	chr15	53951434	53951435	rs1031755	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs1031755-A	NR	2E-11		0.86	[0.61-1.11] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
996	chr15	53951434	53951435	rs1031755	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs1031755-A	0.79	7E-7	(EA)	0.963	[0.58-1.34] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
996	chr15	53951434	53951435	rs1031755	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	15q21.3	WDR72	rs1031755-A	0.6	3E-8	(Japanese)	1.463	[0.95-1.98] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
996	chr15	53962747	53962748	rs10851543	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q21.3	WDR72	rs10851543-A	0.5633	1E-30		0.003	[0.0024-0.0036] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
996	chr15	53994492	53994493	rs6416452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q21.3		rs6416452-G	NR	5E-59		0.0266	[0.023-0.03] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
996	chr15	53997088	53997089	rs578595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	15q21.3		rs578595-A	NR	2E-12		0.0843	[0.061-0.108] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
996	chr15	53997088	53997089	rs578595	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	15q21.3	WDR72	rs578595-C	0.46	6E-11		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 5000000] (imputed)	N
996	chr15	53997088	53997089	rs578595	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	15q21.3	WDR72	rs578595-C	0.46	3E-6		1.09	[1.05-1.13]	Affymetrix [~ 8400000] (imputed)	N
996	chr15	53997337	53997338	rs35258188	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	15q21.3	WDR72	rs35258188-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
996	chr15	53997337	53997338	rs35258188	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	15q21.3	WDR72	rs35258188-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
996	chr15	53997337	53997338	rs35258188	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	15q21.3	WDR72	rs35258188-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
996	chr15	53997337	53997338	rs35258188	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	15q21.3	WDR72	rs35258188-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
996	chr15	53998595	53998608	rs146065426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q21.3		rs146065426-C	NR	6E-9		0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
996	chr15	53999127	53999128	rs8037775	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q21.3	WDR72	rs8037775-?	NR	5E-9		0.016750954	[0.011-0.022] unit decrease	Illumina [27896057] (imputed)	N
997	chr15	54002501	54002502	rs2675336	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q21.3	WDR72	rs2675336-?	NR	2E-9		0.3976	[0.26-0.53] unit increase	Affymetrix [11100000] (imputed)	N
997	chr15	54002605	54002606	rs77593734	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,901 European, African American or Hispanic cases, 175,244 European, African American or Hispanic controls	NA	15q21.3	WDR72	rs77593734-T	0.72	1E-11		1.102	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
997	chr15	54003090	54003091	rs551225	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Urine pH measurement	149,899 Icelandic ancestry individuals (includes non-array genotyped, whole-genome imputed individuals)	NA	15q21.3	WDR72	rs551225-A	0.45239	3E-15		0.03	[0.02-0.03] unit decrease	Illumina [32500000] (imputed)	N
997	chr15	54003090	54003091	rs551225	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Low urine pH	35,897 Icelandic ancestry cases, 112,302 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	15q21.3	WDR72	rs551225-A	0.4524	7E-13		1.081	[1.06-1.10]	Illumina [32500000] (imputed)	N
997	chr15	54008844	54008845	rs690346	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	15q21.3	WDR72	rs690346-?	1.93237E-4	2E-16				Illumina [~ 244000]	N
997	chr15	54009230	54009231	rs475377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q21.3		rs475377-?	NR	3E-9				NR [~ 8900000] (imputed)	N
997	chr15	54107732	54107732	rs200605061	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	15q21.3	WDR72	rs200605061-?	0.121	7E-12		0.009	[0.007-0.012] unit increase	NR [57525634] (imputed)	N
997	chr15	54119669	54119670	rs766614	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	15q21.3	WDR72	rs766614-G	0.212	2E-8		0.0157	[0.01-0.021] unit increase	Illumina [~ 250000] (imputed)	N
997	chr15	54129427	54129428	rs2725571	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	UNC13C	rs2725571-?	NR	7E-6	(indole-3-propionate)	0.16746859	[0.095-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
998	chr15	54165036	54165037	rs7169793	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	15q21.3	WDR72	rs7169793-?		1E-6	(AA)	0.228	[-0.08168-0.53768] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
998	chr15	54204953	54204954	rs56670848	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	15q21.3	NR	rs56670848-GC	0.7179	4E-6		0.1264	[0.073-0.18] unit decrease	Illumina [8348463] (imputed)	N
998	chr15	54256257	54256258	rs8027521	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	15q21.3	NR	rs8027521-C	NR	7E-7	(European)	0.0397	[0.024-0.055] unit decrease	Affymetrix [2023499] (imputed)	N
998	chr15	54259501	54259502	rs143126598	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	15q21.3	WDR72, UNC13C	rs143126598-A	0.012	5E-8	(East Asian)	0.39	[0.23-0.55] unit decrease	Illumina [up to 13042663] (imputed)	N
999	chr15	54295191	54295192	rs144442299	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	15q21.3	UNC13C	rs144442299-T	NR	8E-7	(Perc15, All)	5.4	[-0.284-11.084] unit decrease	Illumina [7600000] (imputed)	N
999	chr15	54298918	54298919	rs17731916	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	15q21.3	UNC13C	rs17731916-C	0.124853	4E-6		0.686	[0.584 - 0.806]	Illumina [5397362] (imputed)	N
999	chr15	54323433	54323434	rs138188349	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q21.3	UNC13C	rs138188349-G	NR	2E-7	(G_Faecalitalea_HB)	1.53494	[0.96-2.11] unit increase	Illumina [7711310] (imputed)	N
999	chr15	54341464	54341465	rs1897031	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	15q21.3	UNC13C	rs1897031-?	0.1753	1E-6	(PRM)			Illumina [475971]	N
999	chr15	54364760	54364761	rs11071027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q21.3		rs11071027-?	NR	1E-8				NR [~ 8900000] (imputed)	N
999	chr15	54380199	54380200	rs11071033	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.3	UNC13C	rs11071033-T	0.71	3E-6	(AA)	4.49	[2.61-6.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
999	chr15	54380199	54380200	rs11071033	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q21.3	UNC13C	rs11071033-T	0.41	7E-6	(EA)	1.134	[0.42-1.85] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1000	chr15	54420937	54420938	rs191883222	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	15q21.3	NR	rs191883222-?	NR	4E-6		0.5042	[0.29-0.72] unit increase	Illumina [at least 560000] (imputed)	N
1000	chr15	54469457	54469458	rs11634695	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	WDR72	rs11634695-?	NR	1E-6	(LPE 18:1)	0.18203866	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1000	chr15	54473007	54473008	rs12593171	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	15q21.3		rs12593171-A	NR	2E-6		1.4		Illumina [7574753] (imputed)	N
1000	chr15	54499762	54499763	rs12591055	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	15q21.3	UNC13C	rs12591055-C	0.1149	9E-6	(African)			Illumina [4404269] (imputed)	N
1002	chr15	54668909	54668910	rs74422563	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs74422563-G	0.01742	8E-10	(KRT10)	0.6733	NR unit increase	Illumina [1671387] (imputed)	N
1002	chr15	54680631	54680632	rs10518765	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	15q21.3	intergenic	rs10518765-?	NR	1E-6	(AlkPhos)			Affymetrix [70897]	N
1002	chr15	54685462	54685463	rs489526	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	15q21.3	UNC13C	rs489526-G	NR	8E-6		0.974	[0.963- 0.986]	Illumina [6740241] (imputed)	N
1002	chr15	54715641	54715642	rs73419609	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	15q21.3	UNC13C	rs73419609-?	NR	6E-6	AA	2.22	[NR]	Illumina [up to 5616481] (imputed)	N
1002	chr15	54716704	54716705	rs188083196	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	15q21.3	UNC13C	rs188083196-T	NR	2E-6		5.48082	[3.23-7.73] unit increase	Illumina [13520550] (imputed)	N
1003	chr15	54806903	54806904	rs7176858	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	UNC13C	rs7176858-?		1E-6				Illumina [4322238] (imputed)	N
1003	chr15	54830620	54830621	rs143917258	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	15q21.3	UNC13C	rs143917258-T	NR	8E-6		3.56606	[2-5.13] unit increase	Illumina [13520550] (imputed)	N
1003	chr15	54868667	54868668	rs2553218	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	15q21.3	UNC13C	rs2553218-?		8E-7	(Hispanic)			Illumina [NR]	N
1005	chr15	55056131	55056132	rs34560971	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	15q21.3	NR	rs34560971-G	0.7833	1E-6		0.7817	[0.47-1.09] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1005	chr15	55069890	55069891	rs139094670	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q21.3	UNC13C	rs139094670-C	0.9986	8E-6		1.0263	[0.57-1.48] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1005	chr15	55099999	55100000	rs2651759	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	15q21.3	NR	rs2651759-G		9E-6		0.2229	[0.12-0.32] SD units increase	NR [10700000] (imputed)	N
1006	chr15	55196088	55196089	rs72738235	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	NR	rs72738235-?		3E-6				Illumina [4322238] (imputed)	N
1006	chr15	55226569	55226570	rs12438945	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	15q21.3	intergenic	rs12438945-?		4E-6	(M)	21.63	[12.63-30.63] unit increase	Illumina [693128]	N
1006	chr15	55309005	55309006	rs76158983	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria in chronic kidney disease	up to 744 European ancestry child cases, up to 397 Turkish ancestry child cases	NA	15q21.3	RSL24D1, UNC13C	rs76158983-?	0.95	5E-6		2.86	[1.82-4.55]	Illumina [~ 8300000] (imputed)	N
1007	chr15	55321127	55321128	rs1528472	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	15q21.3	Intergenic	rs1528472-A	0.48	3E-6		0.03	[0.016-0.044] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1007	chr15	55321127	55321128	rs1528472	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	15q21.3	Intergenic	rs1528472-A	0.48	5E-7		0.032	[0.02-0.044] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1007	chr15	55375000	55375001	rs8033740	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	15q21.3	NR	rs8033740-T	0.087	5E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1007	chr15	55386742	55386743	rs1528473	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	15q21.3	RP11-548M13.1	rs1528473-?	NR	3E-7	(Shared)			Affymetrix, Illumina [~ 5200000]	N
1007	chr15	55423241	55423242	rs11856493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q21.3		rs11856493-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1008	chr15	55456509	55456510	rs16976033	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	15q21.3	RSL24D1	rs16976033-?	NR	7E-6				Illumina [874956]	N
1008	chr15	55480466	55480467	rs16976116	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q21.3	RSL24D1	rs16976116-?	NR	8E-6		0.108	[0.035-0.181] unit decrease	Illumina [at least 13000000] (imputed)	N
1008	chr15	55520181	55520182	rs10518805	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	15q21.3		rs10518805-?	NR	6E-6		0.797111	[0.7-0.9]	NR [674885]	N
1008	chr15	55534341	55534342	rs2444043	25431337	Bouzigon E	2014-11-27	Clin Exp Allergy	A common variant in RAB27A gene is associated with fractional exhaled nitric oxide levels in adults.	Fractional exhaled nitric oxide levels	610 European ancestry adult individuals, 601 Hutterite (founder/genetic isolate) adult individuals	450 Talana (founder/genetic isolate) adult individuals, 8,858 European ancestry children	15q21.3	RAB27A	rs2444043-T	0.5	2E-7	(adults)	5.24	[NR] Z score increase	Affymetrix, Illumina [247463] (imputed)	N
1008	chr15	55547056	55547057	rs4774756	30714141	Chen H	2019-02-04	Int J Cancer	Two novel genetic variants in the STK38L and RAB27A genes are associated with glioma susceptibility.	Glioma	992 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,105 Han Chinese ancestry cases, 3,374 Han Chinese ancestry controls	15q21.3	RAB27A	rs4774756-C	0.28	6E-8		1.24	[1.15-1.33]	Illumina [1889625] (imputed)	N
1009	chr15	55633629	55633630	rs138934880	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	15q21.3	NR	rs138934880-G	0.0175808	2E-6	(men)	0.936961	[0.56-1.32] % decrease	Affymetrix [532676] (imputed)	N
1009	chr15	55633629	55633630	rs138934880	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	15q21.3	NR	rs138934880-G	0.0175808	3E-6	(men)	0.857856	[0.5-1.21] mm2 decrease	Affymetrix [532676] (imputed)	N
1009	chr15	55633629	55633630	rs138934880	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	15q21.3	NR	rs138934880-G	0.0175808	6E-6	(men)	0.510252	[0.29-0.73] % decrease	Affymetrix [532676] (imputed)	N
1009	chr15	55633629	55633630	rs138934880	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	15q21.3	NR	rs138934880-G	0.0175808	6E-7	(men)	0.694326	[0.42-0.96] % decrease	Affymetrix [532676] (imputed)	N
1009	chr15	55660225	55660226	rs16976298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	CCPG1	rs16976298-?	NR	6E-6	(3-hydroxyanthranilic acid)	0.39045116	[0.22-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1009	chr15	55663992	55663993	rs74438085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.3		rs74438085-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1010	chr15	55728583	55728584	rs73408827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q21.3		rs73408827-A	NR	3E-8		0.0199	[0.013-0.027] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1011	chr15	55837887	55837888	rs1550327	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q21.3	PYGO1	rs1550327-T	0.6078	5E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix [18391927] (imputed)	N
1011	chr15	55881001	55881002	rs145581831	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q21.3	NR	rs145581831-?	NR	9E-6		0.828076	[0.46-1.19] unit increase	NR [13958389] (imputed)	N
1011	chr15	55901121	55901122	rs78364795	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q21.3	NR	rs78364795-?	NR	1E-7		4.04	[3.2-5.1]	Illumina [539000] (imputed)	N
1011	chr15	55905957	55905957	rs373051351	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 79)	19,670 European ancestry individuals	NA	15q21.3		rs373051351-?,rs373051351-?	NR	2E-12				NR [9705931] (imputed)	N
1011	chr15	55905957	55905957	rs373051351	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 79)	19,670 European ancestry individuals	NA	15q21.3		rs373051351-?,rs373051351-?	NR	2E-12				NR [9705931] (imputed)	N
1011	chr15	55950081	55950082	rs11071200	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	15q21.3	PRTG	rs11071200-T	0.008	9E-7	(Dominant model)	8.241	[2.888-23.520]	Illumina [733202]	N
1011	chr15	55951431	55951432	rs12438177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.3		rs12438177-A	0.3676	1E-10		0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1011	chr15	55951431	55951432	rs12438177	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.3	Intergenic	rs12438177-A	0.3676	1E-11	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1011	chr15	55962860	55962861	rs4774220	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q21.3		rs4774220-A	0.25	3E-36		12.58	z score increase	Affymetrix [9061022] (imputed)	N
1011	chr15	55962860	55962861	rs4774220	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q21.3	NR	rs4774220-A	0.2476	1E-17				NR [9056863] (imputed)	N
1011	chr15	55965520	55965521	rs28556884	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.3		rs28556884-C	0.26	6E-45		14.07	z score increase	Affymetrix [9061022] (imputed)	N
1011	chr15	55965520	55965521	rs28556884	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.3		rs28556884-C	0.26	5E-20		9.17	z score increase	Affymetrix [9061022] (imputed)	N
1011	chr15	55965520	55965521	rs28556884	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q21.3	NR	rs28556884-C	0.2553	1E-17				NR [9056863] (imputed)	N
1011	chr15	55965520	55965521	rs28556884	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q21.3	PRTG	rs28556884-T	0.744	3E-8		0.0075	[0.0048-0.0102] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1011	chr15	55965665	55965666	rs75403514	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PRTG	rs75403514-?	NR	1E-11		0.59	[NR] unit increase	Affymetrix [NR] (imputed)	N
1012	chr15	55968538	55968539	rs12373006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	15q21.3	HHIP, ANAPC10, ABCE1, OTUD4	rs12373006-?		2E-13				NR [7428630] (imputed)	N
1012	chr15	55968538	55968539	rs12373006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q21.3	PYGO1, PRTG	rs12373006-?		5E-11				NR [7428630] (imputed)	N
1012	chr15	55989938	55989939	rs10851590	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	15q21.3		rs10851590-T	NR	1E-9		1.390194	NR	Affymetrix [7846216] (imputed)	N
1012	chr15	56011368	56011369	rs150550955	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q21.3	NR	rs150550955-G	NR	2E-7	(GEE model)	1.2447	[0.78-1.71] unit decrease	NR [NR] (imputed)	N
1012	chr15	56038706	56038707	rs12912292	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	15q21.3	PRTG	rs12912292-A	0.52	1E-11		1.22	1.15-1.29	Illumina [9210350] (imputed)	N
1012	chr15	56038888	56038889	rs117976868	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	15q21.3	PRTG	rs117976868-A	0.99	2E-6		0.051	[0.029-0.073] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1012	chr15	56094179	56094180	rs17819222	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q21.3	PRTG, NEDD4	rs17819222-G	0.9013	4E-11		0.152	[0.11-0.2] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1012	chr15	56094216	56094217	rs17819228	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs17819228-C	0.901135	3E-11		0.102922	[0.073-0.133] decrease	Affymetrix [11014269] (imputed)	N
1013	chr15	56116230	56116231	rs4774830	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	15q21.3	NR	rs4774830-T	0.0253	6E-6		0.183	[0.1-0.26] unit increase	Illumina [up to 1980188] (imputed)	N
1013	chr15	56116562	56116563	rs13380185	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	15q21.3	PRTG, NEDD4	rs13380185-?	NR	1E-8		0.07	[0.046-0.094] unit increase	Illumina [12039492] (imputed)	N
1013	chr15	56151029	56151030	rs1863758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q21.3		rs1863758-G	NR	9E-11		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1013	chr15	56151029	56151030	rs1863758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.3		rs1863758-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1013	chr15	56154634	56154635	rs16976600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	668 European ancestry cases, 481,244 European ancestry controls, 1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	15q21.3		rs16976600-T	NR	4E-16		0.2984	[0.23-0.37] unit increase	Affymetrix, Illumina [25844469] (imputed)	N
1013	chr15	56154634	56154635	rs16976600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	15q21.3		rs16976600-T	0.356423511	3E-14		0.35514858	[0.26-0.45] unit increase	Illumina [13429980] (imputed)	N
1013	chr15	56154634	56154635	rs16976600	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Keloid	812 Japanese ancestry cases, 211,641 Japanese ancestry controls	NA	15q21.3		rs16976600-T	0.355915663	1E-11		1.4259819	[1.286765154-1.58026066]	Illumina [8919992] (imputed)	N
1013	chr15	56158494	56158495	rs1912409	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q21.3	NEDD4	rs1912409-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1013	chr15	56172151	56172152	rs62043796	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q21.3	NEDD4	rs62043796-T	0.8939	1E-12		0.0219	[0.016-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
1013	chr15	56194876	56194877	rs8032158	20711176	Nakashima M	2010-08-15	Nat Genet	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	15q21.3	NEDD4	rs8032158-C	0.36	6E-13		1.51	[1.35-1.69]	Illumina [452038]	N
1013	chr15	56208932	56208933	rs1912403	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q21.3	NEDD4	rs1912403-T	0.9058	3E-9		0.136	[0.089-0.183] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1013	chr15	56210928	56210929	rs17819300	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		15q21.3	NEDD4	rs17819300-?	NR	1E-10	(Strength - R-banks of the superior temporal sulcus)			Illumina [428287]	N
1013	chr15	56229759	56229760	rs1509406	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	15q21.3	NEDD4	rs1509406-G	0.356	3E-10		1.164	[1.110-1.22]	Illumina [238825]	N
1014	chr15	56282457	56282458	rs574687503	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q21.3	NEDD4	rs574687503-A	0.0051	7E-6		0.31	[0.17-0.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1014	chr15	56304496	56304497	rs12442374	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	15q21.3	NEDD4	rs12442374-G	0.14	4E-7		1.06	[1.04-1.09]	NR [~ 8000000] (imputed)	N
1015	chr15	56379165	56379166	rs35371323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	RFX7	rs35371323-T	NR	2E-13		0.0328843	[0.024-0.042] unit increase	Affymetrix [321114] (imputed)	N
1015	chr15	56382294	56382295	rs16976734	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q21.3	NEDD4, RFX7	rs16976734-G	0.11	4E-7		1.36	[NR]	Illumina [450000] (imputed)	N
1015	chr15	56385867	56385868	rs33984059	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	15q21.3	NR	rs33984059-A	NR	2E-9		1.19	[1.12-1.26]	Affymetrix, Illumina [29235255] (imputed)	N
1015	chr15	56385867	56385868	rs33984059	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	15q21.3	RFX7	rs33984059-A	0.98	1E-8		1.19	[1.12-1.27]	Illumina [20370935] (imputed)	N
1015	chr15	56423308	56423308	rs200498255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	RFX7	rs200498255-TA	NR	6E-15		0.034222	[0.026-0.043] unit increase	Affymetrix [321169] (imputed)	N
1015	chr15	56429727	56429728	rs78634107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.3		rs78634107-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1015	chr15	56433854	56433855	rs11638850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q21.3		rs11638850-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1015	chr15	56465750	56465751	rs12592096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	RFX7	rs12592096-T	NR	3E-14		0.0264539	[0.02-0.033] unit increase	Affymetrix [321169] (imputed)	N
1015	chr15	56465750	56465751	rs12592096	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q21.3	NR	rs12592096-?	NR	7E-20				Affymetrix [~ 8270000] (imputed)	N
1015	chr15	56479758	56479758	rs57926455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q21.3	NR	rs57926455-I	0.364401	5E-12		0.014538	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1016	chr15	56494801	56494802	rs2713939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q21.3		rs2713939-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	15q21.3	NR	rs8030605-?	NR	9E-9				Affymetrix, Illumina [6211016] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q21.3	NR	rs8030605-A	0.13	1E-22		0.026	[0.021-0.031] unit increase	Affymetrix [2446094] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q21.3	NR	rs8030605-A	0.13	5E-8				Affymetrix [2446094] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q21.3	RFX7	rs8030605-A	0.1563	7E-6		0.02	[0.011-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q21.3	RFX7	rs8030605-A	0.1483	2E-9		0.0305	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q21.3	RFX7	rs8030605-A	0.1482	4E-6	(women)	0.0313	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr15	56504597	56504598	rs8030605	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q21.3	RFX7	rs8030605-A	0.1415	9E-9	(EA)	0.0304	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr15	56517815	56517816	rs11636035	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	RFX7	rs11636035-?		2E-6				Illumina [4322238] (imputed)	N
1016	chr15	56517815	56517816	rs11636035	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	RFX7	rs11636035-?		6E-6				Illumina [4322238] (imputed)	N
1016	chr15	56525993	56525994	rs12591294	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q21.3	NR	rs12591294-T	0.7849	3E-20		0.0199	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1016	chr15	56528805	56528806	rs12595496	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	15q21.3	NR	rs12595496-A	0.875928267939582	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1016	chr15	56528805	56528806	rs12595496	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	15q21.3	NR	rs12595496-A	0.875928267939582	4E-9		0.029148584	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1016	chr15	56538561	56538562	rs2713933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q21.3		rs2713933-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1016	chr15	56541394	56541395	rs2682049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q21.3	TEX9	rs2682049-T	0.417996	1E-39		0.029682564	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr15	56541394	56541395	rs2682049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2682049-C	0.58478	5E-43				Affymetrix, Illumina [22063850] (imputed)	N
1016	chr15	56541394	56541395	rs2682049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q21.3	NR	rs2682049-C	0.583199	9E-42		0.025974	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1016	chr15	56543421	56543422	rs2682051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2682051-C	0.387418	6E-34				Affymetrix, Illumina [20825802] (imputed)	N
1016	chr15	56543421	56543422	rs2682051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q21.3	NR	rs2682051-C	0.420497	2E-32		0.023241	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1016	chr15	56543545	56543546	rs2718930	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	15q21.3	Intergenic	rs2718930-?	NR	8E-6		1.4501159	[NR]	Affymetrix [492217] (imputed)	N
1016	chr15	56544916	56544917	rs2682053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2682053-A	0.387958	3E-40				Affymetrix, Illumina [24246363] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q21.3		rs2713936-A	0.577	4E-26		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q21.3	TEX9	rs2713936-C	0.420822	2E-28		0.02519834	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q21.3	TEX9	rs2713936-C	0.420771	6E-31		0.026477227	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q21.3	TEX9	rs2713936-C	0.420948	3E-37		0.0269057	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q21.3	TEX9	rs2713936-C	0.420956	2E-31		0.026210036	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q21.3	NR	rs2713936-C	0.418403	2E-38		0.023991	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q21.3		rs2713936-?	NR	4E-29				NR [~ 8900000] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	15q21.3	TEX9	rs2713936-C	0.423	5E-11		0.02363133	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1016	chr15	56545984	56545985	rs2713936	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q21.3	TEX9	rs2713936-C	0.4231	2E-9		0.02171786	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1016	chr15	56572175	56572176	rs8032549	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs8032549-G	0.318072	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1016	chr15	56599831	56599832	rs28604556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	TEX9	rs28604556-A	NR	4E-8		0.0155977	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1016	chr15	56599831	56599832	rs28604556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	TEX9	rs28604556-A	NR	1E-8		0.016067	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1016	chr15	56599831	56599832	rs28604556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	TEX9	rs28604556-A	NR	1E-9		0.0173448	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1017	chr15	56624381	56624382	rs7168886	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q21.3	TEX9	rs7168886-A	0.4615	3E-15		0.02947332	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1017	chr15	56662172	56662172	rs71297631	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q21.3	TEX9	rs71297631-CTGTTA	NR	9E-14		0.0285392	[0.021-0.036] unit increase	Affymetrix [16832071] (imputed)	N
1017	chr15	56674891	56674892	rs2114183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q21.3		rs2114183-A	NR	4E-32		0.0242	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1017	chr15	56675813	56675814	rs35497167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	15q21.3		rs35497167-G	0.278576	5E-8		0.0220906	[0.014-0.03] unit decrease	Illumina [13476266] (imputed)	N
1017	chr15	56675813	56675814	rs35497167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q21.3		rs35497167-G	NR	7E-31		0.0237	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1017	chr15	56693827	56693828	rs117421531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	15q21.3		rs117421531-C	0.277623	4E-8		0.0224039	[0.014-0.03] unit decrease	Illumina [13476299] (imputed)	N
1017	chr15	56695744	56695745	rs144803255	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	15q21.3	RFX7, TEX9, MNS1	rs144803255-A	0.0241	9E-7		4.1709	[3.60-4.74]	Illumina [8809853] (imputed)	N
1017	chr15	56700163	56700164	rs4774856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q21.3		rs4774856-T	NR	9E-13		0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1017	chr15	56710388	56710389	rs79028033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	TEX9	rs79028033-G	NR	1E-11		0.0363129	[0.026-0.047] unit increase	Affymetrix [319769] (imputed)	N
1017	chr15	56710388	56710389	rs79028033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	TEX9	rs79028033-G	NR	1E-11		0.0365051	[0.026-0.047] unit increase	Affymetrix [319769] (imputed)	N
1017	chr15	56710388	56710389	rs79028033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	TEX9	rs79028033-G	NR	3E-11		0.0360055	[0.025-0.047] unit increase	Affymetrix [321169] (imputed)	N
1017	chr15	56716129	56716130	rs12908766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q21.3		rs12908766-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1017	chr15	56718823	56718824	rs5005389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	TEX9, MNS1	rs5005389-C	NR	3E-9		0.0176862	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1017	chr15	56718823	56718824	rs5005389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	TEX9, MNS1	rs5005389-C	NR	9E-10		0.0182161	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1017	chr15	56718823	56718824	rs5005389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	TEX9, MNS1	rs5005389-C	NR	5E-12		0.0207125	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1017	chr15	56718823	56718824	rs5005389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	TEX9, MNS1	rs5005389-C	NR	2E-9		0.0180753	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1017	chr15	56718823	56718824	rs5005389	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q21.3	TEX9, MNS1	rs5005389-C	0.362013	3E-10		0.014651075	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1017	chr15	56731644	56731645	rs35812910	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	15q21.3	TEX9, MNS1	rs35812910-?	NR	1E-8	(Hematocrit)	0.69	[0.45-0.93] unit increase	Illumina [14948665] (imputed)	N
1017	chr15	56731644	56731645	rs35812910	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	15q21.3	MNS1, TEX9	rs35812910-?	NR	2E-8	(Hemoglobin)	0.67	[0.43-0.91] unit increase	Illumina [14948665] (imputed)	N
1017	chr15	56736477	56736478	rs6493858	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	15q21.3	TEX9, MNS1	rs6493858-?	0.41	4E-6		0.25	[0.14-0.35] unit increase	Illumina [2095209]	N
1017	chr15	56746570	56746570	rs140739203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	MNS1	rs140739203-T	NR	2E-16		0.0303938	[0.023-0.038] unit increase	Affymetrix [319769] (imputed)	N
1017	chr15	56746570	56746570	rs140739203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	MNS1	rs140739203-T	NR	6E-17		0.0309723	[0.024-0.038] unit increase	Affymetrix [319769] (imputed)	N
1017	chr15	56746570	56746570	rs140739203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	MNS1	rs140739203-T	NR	3E-16		0.0304938	[0.023-0.038] unit increase	Affymetrix [321114] (imputed)	N
1018	chr15	56756284	56756285	rs1715919	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	15q21.3	MNS1	rs1715919-G	0.0981	7E-10		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [at least 228985]	N
1018	chr15	56756284	56756285	rs1715919	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	15q21.3	MNS1	rs1715919-G	0.1027	4E-9		0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina [at least 228985]	N
1018	chr15	56756284	56756285	rs1715919	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	15q21.3	MNS1	rs1715919-G	0.0958	9E-11		0.0228	[0.016-0.03] unit increase	Affymetrix, Illumina [at least 228985]	N
1018	chr15	56756284	56756285	rs1715919	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	15q21.3	MNS1	rs1715919-G	0.1011	2E-10		0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 228985]	N
1018	chr15	56759231	56759232	rs34884411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	MNS1	rs34884411-A	NR	3E-8		0.0200661	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1018	chr15	56759231	56759232	rs34884411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	MNS1	rs34884411-A	NR	1E-8		0.0206478	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1018	chr15	56759231	56759232	rs34884411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	MNS1	rs34884411-A	NR	4E-9		0.0213568	[0.014-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1018	chr15	56760653	56760654	rs11854764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q21.3	NR	rs11854764-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1018	chr15	56761265	56761266	rs12913413	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	MNS1	rs12913413-G	NR	3E-10		0.021863	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1018	chr15	56761557	56761558	rs72742676	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	NR	rs72742676-?		3E-6				Illumina [4322238] (imputed)	N
1018	chr15	56762375	56762376	rs34940191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q21.3	NR	rs34940191-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1018	chr15	56765898	56765899	rs72742677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	MNS1	rs72742677-G	NR	9E-14		0.0327507	[0.024-0.041] unit increase	Affymetrix [319769] (imputed)	N
1018	chr15	56765898	56765899	rs72742677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	MNS1	rs72742677-G	NR	7E-14		0.032926	[0.024-0.042] unit increase	Affymetrix [319769] (imputed)	N
1018	chr15	56765898	56765899	rs72742677	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q21.3	NR	rs72742677-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1018	chr15	56775596	56775597	rs11636802	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	15q21.3	MNS1, RFXDC2	rs11636802-G	0.11	2E-13		1.41	[NR]	Illumina [549934]	N
1018	chr15	56777690	56777691	rs142215530	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	15q21.3	RFX7, NEDD4	rs142215530-G	NR	2E-18		1.39	[1.29-1.5]	Affymetrix, Illumina [> 10000000] (imputed)	N
1018	chr15	56779184	56779185	rs17238775	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	15q21.3	NR	rs17238775-T	0.8828	2E-10		0.0182	[0.013-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1018	chr15	56779965	56779966	rs11635206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q21.3	MNS1	rs11635206-C	NR	6E-9		0.0169903	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1018	chr15	56779965	56779966	rs11635206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q21.3	MNS1	rs11635206-C	NR	4E-9		0.0172151	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1018	chr15	56779965	56779966	rs11635206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q21.3	MNS1	rs11635206-C	NR	2E-8		0.0165025	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1018	chr15	56779965	56779966	rs11635206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q21.3	MNS1	rs11635206-C	NR	8E-9		0.016989	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1018	chr15	56780766	56780767	rs72742684	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	15q21.3	MNS1, RFX7	rs72742684-T	0.108	2E-13		1.43	[1.30-1.58]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1018	chr15	56781254	56781255	rs16976932	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q21.3	NA	rs16976932-A	0.12	1E-11		0.0186	[0.013-0.024] unit increase	NR [~ 27400000] (imputed)	N
1018	chr15	56812330	56812331	rs8027760	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs8027760-?	NR	2E-42				Affymetrix [NR]	N
1018	chr15	56841966	56841967	rs12903746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q21.3		rs12903746-T	NR	8E-10		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1019	chr15	56887633	56887634	rs1600831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q21.3		rs1600831-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1019	chr15	56930790	56930791	rs72744944	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	15q21.3	NR	rs72744944-?	0.9688	1E-8		1.1435611	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1019	chr15	56931192	56931193	rs72744945	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs72744945-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1019	chr15	56962873	56962874	rs11635201	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs11635201-C	0.844379	4E-8		0.0303268	[0.019-0.041] unit increase	NR [11722792] (imputed)	N
1019	chr15	56992843	56992844	rs3816752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q21.3		rs3816752-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1019	chr15	56992843	56992844	rs3816752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.3	Intergenic	rs3816752-A	0.3507	9E-10	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1019	chr15	56998195	56998196	rs12910459	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q21.3	ZNF280D	rs12910459-T	0.4326	3E-11		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1020	chr15	57020231	57020232	rs750887598	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	15q21.3	ZNF280D	rs750887598-CA	0.9938	3E-6		0.5436	[0.32-0.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1020	chr15	57060529	57060530	rs4601984	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	15q21.3	ZNF280D	rs4601984-G	0.64	2E-9				Affymetrix, Illumina [8002429] (imputed)	N
1020	chr15	57062617	57062618	rs28575268	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q21.3	NA	rs28575268-T		2E-12		0.0137138	[0.0099-0.0175] unit decrease	Illumina [13288253] (imputed)	N
1020	chr15	57062617	57062618	rs28575268	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	15q21.3	ZNF280D	rs28575268-?	NR	6E-10		0.0835	[0.057-0.11] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1020	chr15	57062617	57062618	rs28575268	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	15q21.3	ZNF280D	rs28575268-G	0.667	1E-10		0.087	[0.06-0.114] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1020	chr15	57073463	57073464	rs12910403	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q21.3	NR	rs12910403-G	0.6339440000000001	2E-8		0.0182335	[0.012-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1020	chr15	57077557	57077558	rs11071294	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	15q21.3	TCF12	rs11071294-A	0.7735	5E-8		0.014534944	[0.0093-0.0198] unit increase	Affymetrix [11514936] (imputed)	N
1020	chr15	57078277	57078278	rs7178196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q21.3	ZNF280D	rs7178196-A	0.1669	2E-12		0.03448345	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1020	chr15	57086198	57086199	rs1647381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q21.3		rs1647381-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1020	chr15	57086198	57086199	rs1647381	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	15q21.3	ZNF280D, TCF12	rs1647381-G	NR	8E-9		1.1111112	[1.08-1.15]	Affymetrix [at least 665500] (imputed)	N
1020	chr15	57120988	57120989	rs1657930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q21.3		rs1657930-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1020	chr15	57136958	57136959	rs12437714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q21.3		rs12437714-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1020	chr15	57141230	57141231	rs1115019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q21.3	NR	rs1115019-C	0.79	2E-9		0.017859358	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1020	chr15	57141230	57141231	rs1115019	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q21.3	NR	rs1115019-C	0.79	2E-11		0.0179093	[0.013-0.023] unit decrease	NR [9732723] (imputed)	N
1021	chr15	57154951	57154952	rs138751626	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q21.3	ZNF280D	rs138751626-A	0.923597	4E-14		0.0284208	[0.021-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1021	chr15	57172085	57172086	rs2414487	34719679	Hu SH	2021-10-31	Cell Discov	Discovery of new genetic loci for male sexual orientation in Han population.	Male sexual orientation	188,825 European ancestry individuals, 4,791 Han Chinese ancestry individuals	NA	15q21.3		rs2414487-A	NR	5E-9		0.005	[0.0032-0.0068] unit decrease	Illumina [NR] (imputed)	N
1021	chr15	57179299	57179300	rs2278613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	15q21.3	ZNF280D	rs2278613-G	0.207	2E-10		0.02848583	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1021	chr15	57184306	57184307	rs1660958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q21.3	ZNF280D	rs1660958-A	0.781053	1E-14		0.021120995	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1021	chr15	57185968	57185969	rs1158246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q21.3	ZNF280D	rs1158246-G	0.216408	6E-23		0.027063642	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1021	chr15	57185968	57185969	rs1158246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q21.3	NR	rs1158246-G	0.225201	2E-41		0.030233	[0.026-0.035] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1021	chr15	57186396	57186397	rs7175191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs7175191-G	0.248023	1E-39				Affymetrix, Illumina [24588908] (imputed)	N
1021	chr15	57188760	57188761	rs28371400	31467194	Ganna A	2019-08-01	Science	Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior.	same-sex sexual behaviour	188,825 European ancestry males	NA	15q21.3	NR	rs28371400-T	NR	9E-9		0.049	[0.047-0.051] unit increase	Affymetrix [NR] (imputed)	N
1021	chr15	57190063	57190064	rs1529597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.3		rs1529597-A	0.9637	3E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1021	chr15	57201547	57201548	rs4774899	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q21.3	NR	rs4774899-?	NR	6E-6		0.0324	[0.018-0.047] unit increase	Illumina [at least 560000] (imputed)	N
1021	chr15	57215866	57215867	rs715338	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	15q21.3	NR	rs715338-G		3E-8		0.08	[0.041-0.119] unit increase	NR [NR]	N
1021	chr15	57215866	57215867	rs715338	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q21.3	NR	rs715338-A	0.5776	8E-12		1.042	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1021	chr15	57215866	57215867	rs715338	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q21.3	NA	rs715338-A	0.5675	2E-8	(Female)	1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1022	chr15	57278634	57278638	rs149369584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q21.3		rs149369584-G	NR	7E-13		0.0304	[0.022-0.039] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1022	chr15	57295578	57295579	rs72749499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	15q21.3	NR	rs72749499-G	NR	3E-11		0.0305	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr15	57298960	57298960	rs71113051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q21.3	TCF12	rs71113051-CA	0.785989	6E-33		0.032868866	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr15	57300951	57300952	rs7496293	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q21.3	NR	rs7496293-T	0.563651	4E-9		0.0121045	[0.0081-0.0161] unit increase	Affymetrix [16583148] (imputed)	N
1022	chr15	57300951	57300952	rs7496293	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	15q21.3	NR	rs7496293-T	0.562524	4E-14		0.0233129	[0.017-0.029] unit increase	Affymetrix [16577424] (imputed)	N
1022	chr15	57333415	57333416	rs2435907	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q21.3	NR	rs2435907-G	0.4112	1E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1022	chr15	57369849	57369850	rs28490139	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q21.3	NR	rs28490139-G	0.8415	2E-12		0.0375	[0.027-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.3	NR	rs72731954-G	NR	1E-9		0.0272	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs72731954-G	NR	5E-11		0.0294	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	15q21.3	NR	rs72731954-G	NR	4E-10		0.0281	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3		rs72731954-A	NR	3E-7		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3		rs72731954-A	0.922	2E-7	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs72731954-A	NR	1E-10		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1023	chr15	57442758	57442759	rs72731954	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs72731954-A	NR	2E-7		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1023	chr15	57450019	57450020	rs1841695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs1841695-C	0.234653	2E-52				Affymetrix, Illumina [17210439] (imputed)	N
1023	chr15	57450019	57450020	rs1841695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q21.3	NR	rs1841695-C	0.21617	2E-51		0.035274	[0.031-0.04] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1023	chr15	57456801	57456802	rs117483894	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q21.3	TCF12	rs117483894-G	0.0369	4E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1023	chr15	57462827	57462840	rs202052973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q21.3		rs202052973-T	NR	7E-22		0.0295	[0.023-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1023	chr15	57473074	57473075	rs2615252	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q21.3	NR	rs2615252-?	NR	6E-6		0.0349	[0.02-0.05] unit decrease	Illumina [at least 560000] (imputed)	N
1023	chr15	57488766	57488767	rs2703593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q21.3		rs2703593-?	NR	6E-27				NR [~ 8900000] (imputed)	N
1023	chr15	57488789	57488790	rs2703594	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q21.3	NR	rs2703594-C	0.208728	6E-28		0.0416227	[0.034-0.049] unit decrease	NR [19129689] (imputed)	N
1023	chr15	57498690	57498691	rs2733310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	15q21.3	TCF12	rs2733310-G	0.7934	2E-18		0.03895031	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1023	chr15	57512283	57512284	rs72733928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	15q21.3		rs72733928-T	NR	4E-8		0.0246	[0.016-0.033] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1023	chr15	57512283	57512284	rs72733928	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q21.3	TCF12	rs72733928-A	0.939813	2E-9		0.0263176	[0.018-0.035] unit decrease	Affymetrix [NR] (imputed)	N
1023	chr15	57512283	57512284	rs72733928	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q21.3	TCF12	rs72733928-A	0.939816	5E-10		0.0273302	[0.019-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1024	chr15	57541200	57541201	rs2593235	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q21.3	TCF12	rs2593235-A	0.395	2E-8	(Japanese)	0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
1024	chr15	57541903	57541904	rs997683	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q21.3	TCF12	rs997683-C	NR	1E-9		0.0475651	NR unit increase	NR [NR] (imputed)	N
1024	chr15	57550963	57550964	rs7173477	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	15q21.3		rs7173477-C	0.18	5E-10		0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1024	chr15	57553831	57553832	rs2431023	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	15q21.3	TCF12	rs2431023-A	NR	1E-12		0.0513	unit increase	Illumina [15409056] (imputed)	N
1024	chr15	57553831	57553832	rs2431023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q21.3		rs2431023-A	0.4151	6E-11		0.0093	[0.0066-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1024	chr15	57553970	57553971	rs61996955	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.3		rs61996955-C	0.48	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
1024	chr15	57555797	57555798	rs17820119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q21.3	Intergenic	rs17820119-A	0.0347	1E-8	(MTAG)	0.0204	[0.013-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1024	chr15	57579745	57579746	rs3803452	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	15q21.3	NR	rs3803452-C	NR	7E-7		1.367		Affymetrix [8183964] (imputed)	N
1024	chr15	57592919	57592920	rs78557702	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	15q21.3		rs78557702-?	NR	7E-6		1.47	[1.242-1.74]	Affymetrix [7975321] (imputed)	N
1024	chr15	57608436	57608437	rs76920233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q21.3		rs76920233-A	NR	8E-10		0.1378	[0.094-0.182] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1024	chr15	57643089	57643090	rs7177243	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	15q21.3	CGNL1, TCF12	rs7177243-C	0.056	4E-6		1.45	[1.29-1.61]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1024	chr15	57643885	57643886	rs2921421	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	15q21.3	CGNL1	rs2921421-G	0.03	3E-8		1.72	[1.42-2.09]	Affymetrix, Illumina [11795432] (imputed)	N
1024	chr15	57662734	57662735	rs115831577	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs115831577-C	0.0122	2E-10	(SAMHD1)	0.04024	NR unit increase	Illumina [1671387] (imputed)	N
1024	chr15	57669826	57669827	rs78938229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q21.3	NR	rs78938229-T	NR	1E-9		0.0555	[0.038-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr15	57691743	57691743	rs60341384	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q21.3	CGNL1	rs60341384-?	NR	7E-9		0.4128	[0.27-0.55] unit increase	Affymetrix [11100000] (imputed)	N
1025	chr15	57696625	57696626	rs16977473	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	15q21.3	CGNL1	rs16977473-G	NR	2E-7		1.27	[1.15-1.39]	Illumina [NR]	N
1025	chr15	57716047	57716048	rs1614202	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	15q21.3	NR	rs1614202-?	NR	3E-8	(Quadrant IV (Upper face), Segment 59)	0.024682583	NR unit increase	NR [7417619] (imputed)	N
1025	chr15	57719137	57719138	rs7168958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q21.3	CGNL1	rs7168958-C	0.246418	2E-9		0.015491942	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr15	57719137	57719138	rs7168958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q21.3	CGNL1	rs7168958-C	0.246439	9E-11		0.016653536	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr15	57719137	57719138	rs7168958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q21.3	CGNL1	rs7168958-C	0.24643	3E-11		0.017134957	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr15	57719137	57719138	rs7168958	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs7168958-C	0.228818	5E-12				Affymetrix, Illumina [24332387] (imputed)	N
1025	chr15	57723931	57723931	rs550805650	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q21.3	NR	rs550805650-I	0.642509	6E-11		0.013888	[0.0097-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1025	chr15	57729288	57729289	rs4774940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.3	NR	rs4774940-C	NR	7E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1025	chr15	57729288	57729289	rs4774940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q21.3	NR	rs4774940-C	NR	1E-10		0.0164	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr15	57729288	57729289	rs4774940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q21.3		rs4774940-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1025	chr15	57730306	57730307	rs762262580	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	15q21.3		rs762262580-?	NR	9E-11		0.598855	[0.41-0.79] unit increase	NR [9800000] (imputed)	N
1025	chr15	57731227	57731228	rs138993392	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	15q21.3		rs138993392-?	NR	3E-10		0.249105	[0.17-0.33] unit increase	NR [9800000] (imputed)	N
1025	chr15	57734013	57734014	rs8034215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q21.3	NR	rs8034215-G	NR	9E-12		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr15	57734186	57734187	rs8034838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q21.3	NR	rs8034838-C	0.266332	2E-10		0.013276	[0.0092-0.0174] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1025	chr15	57739744	57739745	rs117122954	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	15q21.3	CGNL1	rs117122954-C	NR	9E-9		15.6213	[10.6-20.65] unit decrease	Illumina [NR] (imputed)	N
1025	chr15	57762792	57762793	rs2934442	21305692	Belmonte Mahon P	2011-02-08	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of age at onset and psychotic symptoms in bipolar disorder.	Bipolar disorder (age of onset and psychotic symptoms)	2,836 European ancestry cases, 2,744 European ancestry controls	3,916 European cases, 5,112 controls	15q21.3	CGNL1	rs2934442-?	NR	1E-6	(age of onset)	1.022	[NR] unit decrease	Affymetrix, Illumina [2373895] (imputed)	N
1025	chr15	57779328	57779329	rs79481398	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	15q21.3	NR	rs79481398-C	0.111	3E-6		0.2226	[0.13-0.32] unit decrease	Illumina [10677593] (imputed)	N
1025	chr15	57793764	57793765	rs1994887	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q21.3	CGNL1	rs1994887-A	0.257	1E-11		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1025	chr15	57793764	57793765	rs1994887	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q21.3	CGNL1	rs1994887-A	0.2785	5E-13		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1026	chr15	57814527	57814528	rs4774951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs4774951-C	NR	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1026	chr15	57825721	57825722	rs57995724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q21.3		rs57995724-T	NR	8E-10		0.0353	[0.024-0.046] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1026	chr15	57830150	57830151	rs117047297	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q21.3	CGNL1	rs117047297-C	0.9836	3E-8		5.533	NR z score decrease	Illumina [26237160] (imputed)	N
1026	chr15	57836276	57836277	rs1623697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q21.3	NR	rs1623697-G	NR	6E-12		0.0189	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1026	chr15	57836790	57836791	rs772155859	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	15q21.3		rs772155859-?	NR	2E-10		0.42929	[0.29-0.57] unit increase	NR [9800000] (imputed)	N
1026	chr15	57839586	57839587	rs16977594	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q21.3	NR	rs16977594-G	NR	3E-10		0.0562	[0.039-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1026	chr15	57870865	57870866	rs2635383	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs2635383-?	NR	4E-9		0.003714	[0.0018-0.0057] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1026	chr15	57871800	57871801	rs2932207	32239439	Barr PB	2020-04-01	Behav Genet	A Family-Based Genome Wide Association Study of Externalizing Behaviors.	Externalizing behaviour score	7,568 European ancestry individuals, 3,274 African ancestry individuals, 4,270 European and African ancestry individuals	NA	15q21.3	NR	rs2932207-?	NR	5E-8		5.449	NR z score decrease	Affymetrix, Illumina [up to 15537641] (imputed)	N
1026	chr15	57876787	57876788	rs1908195	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q21.3	NR	rs1908195-?		1E-6				Illumina [4322238] (imputed)	N
1026	chr15	57907688	57907689	rs4774974	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	15q21.3	NR	rs4774974-?	NR	4E-6	(AA)	0.523365	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1026	chr15	57910163	57910164	rs937254	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	15q21.3	GCOM1	rs937254-A	0.57	7E-7		0.077	[0.047-0.107] unit increase	Affymetrix [~ 2740000] (imputed)	N
1026	chr15	57924713	57924714	rs147301839	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q21.3	GCOM1/MYZAP	rs147301839-C	0.007	2E-10		1.39	[1.26-1.55]	Illumina [34740186] (imputed)	N
1027	chr15	57939546	57939547	rs2433198	32239439	Barr PB	2020-04-01	Behav Genet	A Family-Based Genome Wide Association Study of Externalizing Behaviors.	Externalizing behaviour score	7,568 European ancestry individuals, 3,274 African ancestry individuals, 4,270 European and African ancestry individuals	NA	15q21.3	NR	rs2433198-?	NR	4E-6		4.594	NR z score decrease	Affymetrix, Illumina [up to 15537641] (imputed)	N
1027	chr15	57947185	57947186	rs16977635	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q21.3	NR	rs16977635-?	NR	1E-8				Illumina [7760689] (imputed)	N
1027	chr15	58009758	58009759	rs1808478	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	15q21.3	GCOM2, POLR2M	rs1808478-T	NR	5E-6		0.59	[0.34-0.84] unit decrease	Affymetrix, Illumina [2354422] (imputed)	N
1027	chr15	58033858	58033859	rs487836	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q21.3	GRINL1A, ALDH1A2	rs487836-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
1027	chr15	58034318	58034319	rs12906285	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	15q21.3	NR	rs12906285-?	NR	2E-6		0.0241	[0.014-0.034] unit decrease	Illumina [~ 7800000] (imputed)	N
1027	chr15	58050472	58050473	rs578037220	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	15q21.3	POLR2M	rs578037220-A	0.0078	3E-6		0.2621	[0.15-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1028	chr15	58078260	58078261	rs17240160	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	15q21.3	GCOM1	rs17240160-A		2E-9		26.1	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
1028	chr15	58080616	58080617	rs1559777	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		15q21.3	intergenic	rs1559777-?	0.2	1E-6			[NR]	Affymetrix, Illumina [152234]	N
1028	chr15	58082366	58082367	rs566767	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q21.3	GRINL1A, ALDH1A2	rs566767-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1028	chr15	58085371	58085372	rs114831632	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs114831632-A	0.995	1E-6	(AA)	0.122	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58088888	58088889	rs149074315	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs149074315-C	0.996	4E-7	(AA)	0.14	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58089334	58089335	rs140526800	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs140526800-T	0.995	1E-6	(AA)	0.121	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58089735	58089736	rs35028949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs35028949-T	0.957464	4E-9		0.0587412	[0.039-0.078] unit increase	NR [11722792] (imputed)	N
1028	chr15	58099715	58099716	rs143813437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs143813437-G	0.995307	6E-9		0.17611	[0.12-0.24] unit decrease	NR [11722792] (imputed)	N
1028	chr15	58099715	58099716	rs143813437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs143813437-G	0.995307	5E-10		0.183961	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
1028	chr15	58099715	58099716	rs143813437	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs143813437-G	0.995307	5E-8		0.161403	[0.1-0.22] unit increase	NR [11722792] (imputed)	N
1028	chr15	58100591	58100592	rs145330511	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs145330511-T	0.995	1E-6	(AA)	0.127	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58102240	58102241	rs7164035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs7164035-A	0.973	7E-7	(AA)	0.058	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58104798	58104799	rs113870173	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs113870173-A	0.994	4E-6	(AA)	0.119	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58105032	58105033	rs115942227	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q21.3	Intergenic	rs115942227-A	0.992	4E-7	(AA)	0.114	unit increase	Illumina [NR] (imputed)	N
1028	chr15	58182025	58182025	rs141467799	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	15q21.3	NR	rs141467799-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1029	chr15	58196877	58196878	rs113062078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113062078-G	0.983103	4E-9		0.0888144	[0.059-0.118] unit decrease	NR [11722792] (imputed)	N
1029	chr15	58198090	58198091	rs12148652	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs12148652-?	NR	1E-8	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58198763	58198764	rs55939729	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs55939729-C	0.01916	2E-8	(ALDOA)	0.2702	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr15	58198763	58198764	rs55939729	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q21.3	NR	rs55939729-C	0.01916	1E-11	(ABCB6)	0.03841	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr15	58199388	58199389	rs71478642	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	15q21.3	ALDH1A2	rs71478642-C	NR	4E-6		17.0997	[10.13-24.07] unit decrease	Illumina [NR] (imputed)	N
1029	chr15	58201659	58201660	rs7498008	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs7498008-?	NR	4E-18	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58202221	58202222	rs8042779	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	15q21.3	JADE2	rs8042779-?		7E-19				NR [7428630] (imputed)	N
1029	chr15	58202221	58202222	rs8042779	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q21.3	ALDH1A2	rs8042779-?		9E-17				NR [7428630] (imputed)	N
1029	chr15	58213413	58213414	rs1550576	19609347	Adeyemo A	2009-07-17	PLoS Genet	A genome-wide association study of hypertension and blood pressure in African Americans.	Hypertension	509 African American cases, 508 African American controls	366 West African ancestry cases, 614 West African ancestry controls	15q21.3	ALDH1A2	rs1550576-?	0.86	3E-6		1.92	[NR]	Affymetrix [808465]	N
1029	chr15	58214209	58214210	rs2218260	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q21.3	ALDH1A2	rs2218260-T	0.5904	4E-9		0.0187	[0.012-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1029	chr15	58215726	58215727	rs4775006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	15q21.3	MARCH4, SMARCAL1, RPL37A	rs4775006-?		1E-18				NR [7428630] (imputed)	N
1029	chr15	58215726	58215727	rs4775006	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	15q21.3	SLC12A8	rs4775006-?		2E-18				NR [7428630] (imputed)	N
1029	chr15	58215726	58215727	rs4775006	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs4775006-?	NR	3E-22	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58215726	58215727	rs4775006	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	15q21.3	NR	rs4775006-A	0.41	8E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1029	chr15	58219865	58219866	rs76801888	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs76801888-?	NR	4E-10	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58221726	58221727	rs8025493	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q21.3	NR	rs8025493-?		3E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1029	chr15	58242474	58242475	rs10851632	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.3		rs10851632-A	0.44	4E-28		11.0	z score increase	Affymetrix [9061022] (imputed)	N
1029	chr15	58242474	58242475	rs10851632	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q21.3	NR	rs10851632-A	0.4442	1E-17				NR [9056863] (imputed)	N
1029	chr15	58246801	58246802	rs3204689	24728293	Styrkarsdottir U	2014-04-13	Nat Genet	Severe osteoarthritis of the hand associates with common variants within the ALDH1A2 gene and with rare variants at 1p31.	Osteoarthritis (hand, severe)	623 European ancestry cases, 69,153 European ancestry controls	214 European ancestry cases, 8,172 European ancestry controls	15q21.3	ALDH1A2	rs3204689-C	0.52	1E-11		1.46	[1.31-1.63]	Illumina [34200000] (imputed)	N
1029	chr15	58253105	58253106	rs3784262	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	15q21.3	NR	rs3784262-A	0.54	7E-7		1.1364	[1.09-1.2]	Illumina [922031]	N
1029	chr15	58253105	58253106	rs3784262	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	15q21.3	NR	rs3784262-A	0.54	4E-7		1.1765	[1.11-1.25]	Illumina [922031]	N
1029	chr15	58254744	58254745	rs2119859	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q21.3	NR	rs2119859-T	0.4659	1E-17				NR [9056863] (imputed)	N
1029	chr15	58257122	58257123	rs4646623	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q21.3		rs4646623-T	0.46	1E-65		17.12	z score increase	Affymetrix [9061022] (imputed)	N
1029	chr15	58259938	58259939	rs8031133	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q21.3	NR	rs8031133-?		4E-11	(Corticospinal tract )			NR [8955960] (imputed)	N
1029	chr15	58259938	58259939	rs8031133	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	15q21.3	NR	rs8031133-?		1E-10	(Corticospinal tract )			NR [8955960] (imputed)	N
1029	chr15	58267416	58267420	rs66725070	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus	6,167 European ancestry cases, 17,159 European ancestry controls	NA	15q21.3	ALDH1A2	rs66725070-GACAT		3E-10		1.15	[1.11-1.19]	Illumina [11942825] (imputed)	N
1029	chr15	58267778	58267779	rs12594082	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	15q21.3		rs12594082-?	NR	7E-31				NR [9705931] (imputed)	N
1029	chr15	58288730	58288731	rs33960206	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q21.3		rs33960206-C	0.46	2E-32		11.87	z score increase	Affymetrix [9061022] (imputed)	N
1029	chr15	58299995	58299995	rs34133263	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs34133263-?	NR	7E-17	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58320779	58320780	rs12914590	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs12914590-?	NR	4E-8	(X4th ventricle)			NR [9227495] (imputed)	N
1029	chr15	58324834	58324835	rs112242520	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs112242520-A	0.990179	8E-11		0.136406	[0.095-0.178] unit decrease	NR [11722792] (imputed)	N
1029	chr15	58324834	58324835	rs112242520	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs112242520-A	0.990179	2E-13		0.1501	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
1030	chr15	58327346	58327347	rs2899611	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	15q21.3	ALDH1A2	rs2899611-T	0.4951	6E-9		0.0431	[0.029-0.058] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
1030	chr15	58327346	58327347	rs2899611	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	15q21.3	ALDH1A2	rs2899611-G	0.51	1E-8		0.0515	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
1030	chr15	58334243	58334244	rs11071366	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hand	20,901 European ancestry cases, 282,881 European ancestry controls	NA	15q21.3		rs11071366-A	0.6135	5E-17		0.90095496	[0.879322501-0.923119627]	Affymetrix, Illumina [NR] (imputed)	N
1030	chr15	58337458	58337459	rs8023769	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs8023769-?	NR	7E-16	(X4th ventricle)			NR [9227495] (imputed)	N
1030	chr15	58343020	58343021	rs4646572	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs4646572-?	NR	1E-9	(X4th ventricle)			NR [9227495] (imputed)	N
1030	chr15	58344289	58344290	rs4646568	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q21.3	NR	rs4646568-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1030	chr15	58344289	58344290	rs4646568	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	15q21.3	NR	rs4646568-?		5E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1030	chr15	58362024	58362025	rs2464469	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	15q21.3	ALDH1A2	rs2464469-G		5E-10		1.12	[1.09-1.18]	Illumina [11951684] (imputed)	N
1030	chr15	58371681	58371682	rs2704188	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs2704188-?	NR	6E-11	(LDL_TG)	0.057815187	NR unit increase	Illumina [609262]	N
1030	chr15	58375740	58375741	rs12916872	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q21.3	NR	rs12916872-?	NR	2E-10	(X4th ventricle)			NR [9227495] (imputed)	N
1030	chr15	58380441	58380442	rs12910902	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12910902-?	NR	5E-14	(IDL_TG)	0.069567144	NR unit increase	Illumina [609262]	N
1030	chr15	58380441	58380442	rs12910902	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12910902-?	NR	2E-10	(L_LDL_TG)	0.0595429	NR unit increase	Illumina [609262]	N
1030	chr15	58380441	58380442	rs12910902	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12910902-?	NR	9E-8	(IDL_TG)	0.079402424	NR unit increase	Illumina [609262]	N
1030	chr15	58380441	58380442	rs12910902	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12910902-?	NR	4E-6	(L_LDL_TG)	0.0683172	NR unit increase	Illumina [609262]	N
1030	chr15	58384198	58384199	rs12911981	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12911981-?	NR	2E-10	(L_HDL_L)	0.055105124	NR unit increase	Illumina [609262]	N
1030	chr15	58384198	58384199	rs12911981	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LOC283665	rs12911981-?	NR	1E-10	(L_HDL_CE)	0.05084885	NR unit increase	Illumina [609262]	N
1030	chr15	58392880	58392881	rs111720458	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q21.3	ALDH1A2	rs111720458-T	0.0049	9E-6		0.2419	[0.13-0.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1030	chr15	58417213	58417214	rs112165725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs112165725-T	0.990596	1E-9		0.135029	[0.092-0.178] unit decrease	NR [11722792] (imputed)	N
1030	chr15	58418127	58418128	rs2704201	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	15q21.3	ALDH1A2, AQP9	rs2704201-C	0.075227456	4E-6		1.2850466	[1.154833051-1.429942352]	Illumina [10439017] (imputed)	N
1030	chr15	58430762	58430763	rs34945403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	15q21.3		rs34945403-A	0.932372	2E-15		0.0638809	[0.048-0.08] unit increase	NR [11722792] (imputed)	N
1031	chr15	58467094	58467095	rs2280195	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	15q21.3	AQP9	rs2280195-A	0.441	3E-9		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1031	chr15	58471978	58471979	rs16939881	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	15q21.3	AQP9	rs16939881-?	0.05	3E-27				Illumina [~ 2000000] (imputed)	N
1031	chr15	58506457	58506458	rs186791139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs186791139-A	0.997878	1E-9		0.268886	[0.18-0.36] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58506457	58506458	rs186791139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs186791139-A	0.997878	4E-8		0.243257	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
1031	chr15	58516153	58516154	rs141399384	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs141399384-A	0.994111	5E-8		0.157939	[0.1-0.21] unit increase	NR [11722792] (imputed)	N
1031	chr15	58544772	58544773	rs118146059	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	15q21.3	NR	rs118146059-?	NR	2E-21		0.1641	[0.13-0.2] unit decrease novel	Illumina [6108953] (imputed)	N
1031	chr15	58544917	58544918	rs77803341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs77803341-A	NR	4E-9		0.0574	[0.038-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr15	58544917	58544918	rs77803341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs77803341-A	NR	2E-13		0.0718	[0.053-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr15	58545063	58545064	rs1123294	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1123294-C	NR	5E-30		0.1498	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58545063	58545064	rs1123294	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1123294-A	NR	5E-30		0.093	[0.077-0.109] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58545667	58545668	rs113629348	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs113629348-T	NR	1E-10		0.225832	[0.16-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58545667	58545668	rs113629348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs113629348-T	NR	9E-19		0.0688	[0.054-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58545667	58545668	rs113629348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs113629348-T	NR	3E-24		0.0791	[0.064-0.094] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58546177	58546178	rs62000518	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62000518-T	NR	9E-11		0.0811	[0.057-0.106] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58546372	58546373	rs35768119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35768119-C	NR	2E-11		0.188994	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58546372	58546373	rs35768119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35768119-C	NR	2E-10		0.188068	[0.13-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58546372	58546373	rs35768119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35768119-C	NR	2E-11		0.187188	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58546372	58546373	rs35768119	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35768119-C	NR	2E-10		0.181372	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58546696	58546697	rs56314708	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56314708-A	NR	4E-11		0.0369	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58547017	58547018	rs7182541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7182541-G	NR	2E-10		0.1456	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58551693	58551694	rs4471613	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	15q21.3	ALDH1A2, AQP9, LIPC	rs4471613-A	0.02	4E-8	(cohort study)	2.26	[1.69-3.03]	Affymetrix, Illumina [up to 2600000] (imputed)	N
1031	chr15	58551693	58551694	rs4471613	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	15q21.3	ALDH1A2, AQP9, LIPC	rs4471613-A	0.02	4E-8		0.82	[0.53-1.11] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1031	chr15	58551693	58551694	rs4471613	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	15q21.3	ALDH1A2, AQP9, LIPC	rs4471613-A	0.02	5E-7	(cohort study, AA)	2.47	[1.74-3.50]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1031	chr15	58551693	58551694	rs4471613	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	15q21.3	ALDH1A2, AQP9, LIPC	rs4471613-A	0.02	5E-7	(AA)	0.9	[0.55-1.25] unit increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1031	chr15	58552605	58552606	rs7165301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7165301-G	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58552605	58552606	rs7165301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7165301-C	NR	2E-10		0.0718	[0.05-0.094] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58552605	58552606	rs7165301	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7165301-T	NR	2E-10		0.0563	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58552605	58552606	rs7165301	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs7165301-?	NR	3E-21				Affymetrix [NR]	N
1031	chr15	58554913	58554914	rs76970180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs76970180-T	NR	9E-10		0.0492	[0.034-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58554913	58554914	rs76970180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs76970180-T	NR	5E-14		0.0633	[0.047-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58554913	58554914	rs76970180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs76970180-T	NR	4E-16		0.0684	[0.052-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58555029	58555030	rs935213	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs935213-T	NR	5E-12		0.133714	[0.096-0.172] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58555029	58555030	rs935213	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs935213-T	NR	1E-10		0.12765	[0.089-0.166] unit increase	Affymetrix [87696910] (imputed)	N
1031	chr15	58555029	58555030	rs935213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs935213-T	NR	4E-23		0.0403	[0.032-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58555029	58555030	rs935213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs935213-T	NR	1E-30		0.047	[0.039-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58557061	58557062	rs17821159	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	LIPC	rs17821159-?	NR	2E-8	(LPE 16:0)	0.19447644	[0.13-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1031	chr15	58560115	58560116	rs55760919	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs55760919-C	NR	3E-11		0.0549	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58561005	58561006	rs55966152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs55966152-G	NR	4E-11		0.0243	[0.017-0.032] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58561005	58561006	rs55966152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs55966152-A	NR	3E-11		0.0718	[0.051-0.093] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58561005	58561006	rs55966152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs55966152-C	NR	4E-11		0.0791	[0.056-0.102] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58566294	58566295	rs62001667	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001667-C	NR	9E-11		0.0547	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58566294	58566295	rs62001667	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001667-T	NR	9E-11		0.0741	[0.052-0.096] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58566294	58566295	rs62001667	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001667-T	NR	9E-11		0.0567	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58566715	58566716	rs62001668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001668-T	NR	9E-11		0.064	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58566715	58566716	rs62001668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001668-T	NR	9E-11		0.1076	[0.075-0.14] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58566715	58566716	rs62001668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001668-C	NR	9E-11		0.055	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58567121	58567122	rs62001669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001669-G	NR	9E-11		0.0843	[0.059-0.11] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58567121	58567122	rs62001669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001669-T	NR	9E-11		0.0615	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58567121	58567122	rs62001669	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001669-C	NR	9E-11		0.0843	[0.059-0.11] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58567785	58567786	rs8040386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8040386-C	NR	5E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58567785	58567786	rs8040386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8040386-C	NR	5E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58567785	58567786	rs8040386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8040386-C	NR	5E-10		0.0696	[0.048-0.092] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58568076	58568077	rs117386336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs117386336-T	NR	2E-10		0.0778	[0.054-0.102] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr15	58571400	58571401	rs72739147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs72739147-A	NR	3E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58571400	58571401	rs72739147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs72739147-C	NR	3E-10		0.0506	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58571400	58571401	rs72739147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs72739147-G	NR	3E-10		0.051	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58571400	58571401	rs72739147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs72739147-A	NR	3E-10		0.0504	[0.035-0.066] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58571400	58571401	rs72739147	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs72739147-A	NR	3E-10		0.0615	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58571909	58571910	rs11854242	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs11854242-C	0.724926	6E-73		0.0822344	[0.073-0.091] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	6E-51		0.0682627	[0.059-0.077] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	8E-65		0.0768435	[0.068-0.086] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	3E-68		0.0794022	[0.07-0.088] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	3E-52		0.0691697	[0.06-0.078] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	1E-52		0.0693779	[0.06-0.078] unit increase	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs11854318-G	0.725305	1E-75		0.0835204	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	15q21.3		rs11854318-A	0.289429952	5E-10		0.147382	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	15q21.3		rs11854318-A	0.289478381	1E-10		0.151992	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	15q21.3		rs11854318-A	0.289478381	2E-9		0.142287	[0.096-0.189] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	15q21.3		rs11854318-A	0.291483312	2E-10		0.144517	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58571981	58571982	rs11854318	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	15q21.3		rs11854318-A	0.291483312	1E-9		0.137013	[0.093-0.181] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large HDL	4,734 individuals	NA	15q21.3		rs28690720-G	0.148112903	1E-18		0.259445	[0.2-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs28690720-A	NR	2E-12		0.0694	[0.05-0.089] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs28690720-C	NR	2E-12		0.0523	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs28690720-G	NR	2E-12		0.0423	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs28690720-A	NR	2E-12		0.0774	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58573832	58573833	rs28690720	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs28690720-A	NR	2E-12		0.0423	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large HDL	4,348 individuals	NA	15q21.3		rs58038553-G	0.141273465	3E-19		0.284569	[0.22-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs58038553-A	NR	4E-11		0.078	[0.055-0.101] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs58038553-T	NR	4E-11		0.0341	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs58038553-T	NR	4E-11		0.0332	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs58038553-T	NR	4E-11		0.0332	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs58038553-G	NR	4E-11		0.0507	[0.036-0.066] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574323	58574324	rs58038553	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q21.3		rs58038553-?	NR	6E-12		0.0209304	[0.015-0.027] unit increase	NR [6912294] (imputed)	N
1031	chr15	58574957	58574958	rs56142310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56142310-G	NR	4E-11		0.091	[0.064-0.118] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574957	58574958	rs56142310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56142310-C	NR	4E-11		0.0572	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574957	58574958	rs56142310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56142310-C	NR	4E-11		0.0333	[0.024-0.043] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574957	58574958	rs56142310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56142310-C	NR	4E-11		0.0381	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58574957	58574958	rs56142310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56142310-G	NR	4E-11		0.1093	[0.077-0.142] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	9E-67		0.090808	[0.08-0.101] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	3E-15		0.0412763	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814609	4E-60		0.0828789	[0.073-0.093] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	3E-49		0.074324	[0.064-0.084] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	5E-53		0.0735604	[0.064-0.083] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	1E-49		0.0719407	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	4E-42		0.0651492	[0.056-0.075] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	2E-61		0.0869339	[0.077-0.097] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	8E-50		0.072597	[0.063-0.082] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	3E-47		0.0689033	[0.06-0.078] unit increase	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs56050415-T	0.814611	2E-26		0.0537542	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58574965	58574966	rs56050415	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	15q21.3	NR	rs56050415-?	NR	2E-18	(Triglycerides in very large HDL, conditioned)	0.1263201	[0.099-0.154] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1031	chr15	58575004	58575005	rs28607776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs28607776-A	0.868597	2E-189		0.176595	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
1031	chr15	58575004	58575005	rs28607776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs28607776-A	0.868597	2E-254		0.199461	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
1031	chr15	58575004	58575005	rs28607776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs28607776-A	0.868597	5E-191		0.177597	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1031	chr15	58575004	58575005	rs28607776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs28607776-A	0.868602	5E-180		0.168025	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58576225	58576226	rs11071371	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11071371-A	NR	9E-32		0.1575	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58576225	58576226	rs11071371	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11071371-G	NR	9E-32		0.1296	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58576225	58576226	rs11071371	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11071371-A	NR	1E-31		0.1308	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58576225	58576226	rs11071371	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11071371-C	NR	1E-31		0.0853	[0.071-0.1] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58576225	58576226	rs11071371	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs11071371-?	NR	2E-24		0.01322	[0.01-0.016] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1031	chr15	58576295	58576296	rs6493996	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs6493996-C	0.724639	8E-26		0.0470425	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
1031	chr15	58576295	58576296	rs6493996	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6493996-C	0.724639	3E-8		0.0256321	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58577162	58577163	rs10162642	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.3	LIPC	rs10162642-G	0.788315	2E-93		0.0480088	[0.043-0.053] unit increase	Affymetrix [NR] (imputed)	N
1031	chr15	58577776	58577777	rs12903590	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs12903590-?	NR	4E-18		0.01156	[0.0088-0.0143] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1031	chr15	58577776	58577777	rs12903590	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	15q21.3	NR	rs12903590-?	NR	9E-38		0.06743	[0.057-0.078] unit increase novel	Illumina [6108953] (imputed)	N
1031	chr15	58581288	58581289	rs12148780	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	15q21.3	Intergenic region, ALDH1A2*	rs12148780-?		1E-22				NR [NR]	N
1031	chr15	58581369	58581370	rs12148399	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs12148399-?	NR	8E-6		0.7415018	[0.42-1.07] unit decrease	Illumina [31978362] (imputed)	N
1031	chr15	58581369	58581370	rs12148399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs12148399-T	NR	7E-11		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1031	chr15	58581369	58581370	rs12148399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs12148399-T	0.861	9E-9	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1031	chr15	58581369	58581370	rs12148399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs12148399-T	NR	1E-33		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1031	chr15	58581369	58581370	rs12148399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs12148399-T	0.888	3E-6	(East Asian)	0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
1031	chr15	58581369	58581370	rs12148399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs12148399-T	0.861	4E-27	(EA)	0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
1031	chr15	58582147	58582148	rs16940017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940017-G	NR	2E-22		0.0565	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58582147	58582148	rs16940017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940017-G	NR	2E-22		0.0564	[0.045-0.068] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58582147	58582148	rs16940017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940017-G	NR	2E-22		0.121	[0.097-0.145] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58582147	58582148	rs16940017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940017-G	NR	2E-22		0.076	[0.061-0.091] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-9		0.0276636	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717414	3E-11		0.0296884	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-18		0.0389428	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-15		0.0348139	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-11		0.0290263	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-19		0.0391803	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717497	1E-40		0.0611644	[0.052-0.07] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-9		0.0257244	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1973688-C	0.7172	2E-24		0.0473634	[0.038-0.056] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-31		0.0515711	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-8		0.0249051	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	7E-15		0.0347608	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-10		0.0279425	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-34		0.0550478	[0.046-0.064] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-41		0.0605051	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	8E-28		0.047876	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-70		0.0798324	[0.071-0.089] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-54		0.0643537	[0.056-0.072] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-11		0.0301781	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-15		0.0333373	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	5E-15		0.0354585	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	8E-47		0.0579449	[0.05-0.066] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-20		0.0411373	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-28		0.045391	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-14		0.0345663	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	3E-16		0.0371216	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	7E-11		0.0290032	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	2E-36		0.0544456	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	5E-12		0.0307671	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	2E-20		0.0397906	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	1E-14		0.0351409	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-12		0.0315442	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	2E-10		0.0281041	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	5E-9		0.0259212	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	4E-22		0.0432984	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717414	9E-15		0.0357619	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717504	5E-55		0.0659523	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	8E-25		0.045483	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-27		0.0494504	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717497	3E-24		0.0454489	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	5E-26		0.0484699	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1973688-C	0.7172	6E-26		0.048584	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-26		0.0492812	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-57		0.0659243	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-9		0.0272648	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-15		0.0345168	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	7E-46		0.057471	[0.05-0.065] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-30		0.0509754	[0.042-0.06] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-28		0.045896	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	2E-37		0.0555885	[0.047-0.064] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	1E-17		0.0384701	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	6E-19		0.0392877	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	5E-9		0.0265981	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	9E-16		0.0363805	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-17		0.0348971	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717414	2E-19		0.0401151	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717504	4E-58		0.0653761	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	5E-15		0.034729	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-85		0.0849876	[0.076-0.094] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-15		0.0342283	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-33		0.0493075	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717497	8E-18		0.0392211	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1973688-C	0.7172	2E-24		0.0468866	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-61		0.0742391	[0.065-0.083] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-37		0.0547785	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-8		0.0252793	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-8		0.0252914	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-21		0.0396979	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-49		0.0594687	[0.052-0.067] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	7E-14		0.0334195	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1973688-C	0.71749	7E-20		0.0399114	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	9E-63		0.075588	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-63		0.0696345	[0.062-0.078] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-11		0.0308236	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-8		0.0257999	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-15		0.0335929	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-49		0.0592174	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	8E-15		0.0354654	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-11		0.0301656	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717504	5E-36		0.0573857	[0.048-0.066] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-20		0.0408316	[0.032-0.05] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717497	1E-30		0.050693	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-11		0.0304635	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1973688-C	0.7172	3E-12		0.0324904	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-35		0.0557744	[0.047-0.065] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-48		0.0647111	[0.056-0.073] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	4E-14		0.0348172	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-20		0.0429974	[0.034-0.052] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-12		0.0326407	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-10		0.0275534	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-12		0.0289756	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-35		0.0561358	[0.047-0.065] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-8		0.0241796	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	1E-8		0.0263396	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717497	5E-31		0.0520974	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	9E-16		0.0359172	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1973688-C	0.7172	2E-18		0.0405776	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-36		0.0562125	[0.047-0.065] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-12		0.0316342	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	7E-9		0.0266428	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	2E-8		0.0236527	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	5E-11		0.0292635	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	6E-61		0.0669953	[0.059-0.075] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	15q21.3		rs1973688-C	0.717503	3E-20		0.0388049	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1031	chr15	58582539	58582540	rs1973688	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium LDL	4,734 individuals	NA	15q21.3		rs1973688-T	0.298355316	3E-10		0.139957	[0.096-0.183] mmol/l decrease	Illumina [7701709] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1318175-A	NR	6E-25		0.1486	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1318175-C	NR	6E-25		0.054	[0.044-0.064] unit decrease	Illumina [6720657] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1318175-G	NR	6E-25		0.061	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q21.3	AQP9	rs1318175-C	0.84037	4E-30		0.00348497	[0.0029-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.3	LIPC	rs1318175-C	0.840036	2E-186		0.0781476	[0.073-0.083] unit increase	Affymetrix [NR] (imputed)	N
1031	chr15	58586128	58586129	rs1318175	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs1318175-?	NR	1E-19		0.01178	[0.0092-0.0144] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58601770	58601771	rs117261396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs117261396-G	NR	4E-10		0.1037	[0.071-0.136] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58601770	58601771	rs117261396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs117261396-G	NR	1E-13		0.123	[0.09-0.156] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58605556	58605557	rs56195705	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56195705-G	NR	4E-11		0.0469	[0.033-0.061] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58607319	58607320	rs500590	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs500590-C	NR	3E-11		0.0767	[0.054-0.099] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58607319	58607320	rs500590	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs500590-G	NR	3E-11		0.047	[0.033-0.061] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58610554	58610555	rs1816879	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1816879-T	NR	1E-13		0.1288	[0.095-0.163] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58610851	58610852	rs1373660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1373660-C	NR	2E-24		0.0649	[0.053-0.077] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1373655-T	NR	9E-15		0.0965075	[0.072-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1373655-T	NR	1E-11		0.0831423	[0.059-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1373655-T	NR	5E-12		0.0902152	[0.065-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1373655-T	NR	1E-10		0.0798226	[0.056-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1373655-T	NR	3E-16		0.103973	[0.079-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs1373655-T	NR	3E-16		0.0212	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q21.3	NR	rs1373655-T	NR	3E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs1373655-T	NR	6E-45		0.0382	[0.033-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58611858	58611859	rs1373655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs1373655-T	NR	3E-58		0.0439	[0.039-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58612815	58612816	rs11855002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11855002-C	NR	2E-27		0.1392	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58612945	58612946	rs1037040	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1037040-C	NR	5E-37		0.1415	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58615204	58615205	rs56249653	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs56249653-G	NR	4E-11		0.0629	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58619166	58619167	rs187774	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs187774-A	NR	1E-13		0.0482	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58623106	58623107	rs17821220	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17821220-C	NR	6E-14		0.1713	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58623327	58623328	rs17821226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17821226-G	NR	6E-14		0.1729	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58623524	58623525	rs1122208	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1122208-C	NR	4E-11		0.0780097	[0.055-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58623524	58623525	rs1122208	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1122208-C	NR	3E-10		0.0730681	[0.05-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58623524	58623525	rs1122208	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1122208-C	NR	9E-13		0.0858786	[0.062-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58624395	58624396	rs11637094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11637094-C	NR	8E-29		0.0685	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1444940-G	NR	3E-10		0.15467	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1444940-G	NR	1E-10		0.154813	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1444940-G	NR	3E-10		0.161245	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1444940-G	NR	4E-10		0.151801	[0.1-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1444940-G	NR	5E-12		0.172594	[0.12-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs1444940-G	NR	5E-25		0.0522	[0.042-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58625120	58625121	rs1444940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs1444940-G	NR	3E-31		0.0589	[0.049-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58626070	58626071	rs55700245	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs55700245-C	NR	3E-11		0.0628	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58629423	58629424	rs10438284	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	HDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	15q21.3	LIPC	rs10438284-A	0.286	9E-7		5.07	NR z score decrease	Affymetrix [659492]	N
1032	chr15	58629423	58629424	rs10438284	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	AQP9	rs10438284-?	NR	9E-9	(LPE 18:0)	0.2503684	[0.16-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1032	chr15	58633819	58633820	rs261316	29097388	Magvanjav O	2017-11-02	J Am Heart Assoc	Genetic Variants Associated With Uncontrolled Blood Pressure on Thiazide Diuretic/?-Blocker Combination Therapy in the PEAR (Pharmacogenomic Evaluation of Antihypertensive Responses) and INVEST (International Verapamil-SR Trandolapril Study) Trials.	Uncontrolled blood pressure in combination therapy (beta blocker and thiazide diuretic)	123 European ancestry cases, 191 European ancestry controls	85 European ancestry cases, 136 European ancestry controls, 81 Hispanic cases, 112 Hispanic controls	15q21.3	ALDH1A2	rs261316-T	0.60	9E-8		2.16		Illumina [NR] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775031-A	NR	2E-10		0.109936	[0.076-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775031-A	NR	5E-11		0.111475	[0.078-0.145] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775031-A	NR	2E-11		0.11678	[0.083-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs4775031-A	NR	5E-15		0.0275	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs4775031-A	NR	7E-33		0.0439	[0.037-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs4775031-A	NR	4E-47		0.0532	[0.046-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58635582	58635583	rs4775031	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	15q21.3	LIPC	rs4775031-?	NR	2E-6	(TrailsB)			Illumina [up to 563855]	N
1032	chr15	58635890	58635891	rs11853431	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11853431-A	NR	6E-11		0.208804	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58635890	58635891	rs11853431	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11853431-A	NR	1E-11		0.230726	[0.16-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58644086	58644087	rs4775033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.3	LIPC	rs4775033-A	0.879582	2E-61		0.0500198	[0.044-0.056] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58646202	58646203	rs12912626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs12912626-C	NR	4E-10		0.0408	[0.028-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58646202	58646203	rs12912626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs12912626-C	NR	2E-13		0.0479	[0.035-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58646331	58646332	rs4622454	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	AQP9	rs4622454-?	NR	4E-6	(TAG 50:3)	0.15649855	[0.09-0.223] unit increase	Affymetrix [at least 2500000] (imputed)	N
1032	chr15	58654302	58654303	rs72740818	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs72740818-?	NR	1E-10		0.006455	[0.0044-0.0085] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58671177	58671178	rs10152355	34668383	Leskela J	2021-10-20	J Am Heart Assoc	Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke.	Serum lipopolysaccharide activity	11,296 European ancestry individuals	NA	15q21.3	NR	rs10152355-C	0.5389	3E-9		0.0835	[0.056-0.111] unit decrease	Affymetrix, Illumina [9900000] (imputed)	N
1032	chr15	58671558	58671559	rs1601933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601933-C	0.534251	9E-338		0.160659	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671558	58671559	rs1601933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601933-C	0.534251	2E-498		0.190142	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671558	58671559	rs1601933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1601933-C	0.534251	5E-334		0.159999	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671558	58671559	rs1601933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1601933-C	0.534272	1E-359		0.161886	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671558	58671559	rs1601933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.3	LIPC	rs1601933-C	0.533405	2E-389		0.0843028	[0.08-0.088] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58671720	58671721	rs1601934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q21.3		rs1601934-A	NR	6E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1032	chr15	58671720	58671721	rs1601934	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.3	LIPC	rs1601934-G	0.312503	2E-520		0.101129	[0.097-0.105] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	9E-340		0.168419	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	9E-381		0.177295	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	3E-443		0.192461	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	3E-25		0.0438758	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	2E-333		0.166795	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	7E-327		0.165012	[0.16-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	3E-413		0.185758	[0.18-0.19] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	1E-369		0.161348	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	7E-349		0.1529	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	2E-12		0.0296918	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345375	2E-13		0.0299562	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345373	3E-375		0.165998	[0.16-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	2E-425		0.188894	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	8E-389		0.165459	[0.16-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	5E-346		0.152625	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	1E-138		0.0979622	[0.09-0.106] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345373	3E-411		0.167613	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	2E-577		0.212341	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	1E-354		0.172105	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	5E-360		0.155212	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	7E-368		0.176041	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	8E-431		0.17441	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	3E-360		0.155171	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	9E-53		0.0628152	[0.055-0.071] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	1E-468		0.197469	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	4E-54		0.0625802	[0.055-0.071] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	3E-99		0.0830634	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	8E-74		0.0731622	[0.065-0.081] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	1E-14		0.0330269	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1601935-G	0.345362	2E-436		0.172638	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs1601935-?	NR	1E-8		0.6818313	[0.45-0.92] unit decrease	Illumina [31978362] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	NR	2E-15		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.344	2E-13	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	NR	2E-26		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.344	1E-22	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.33	4E-6	(East Asian)	0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	NR	6E-96		0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.344	5E-81	(EA)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.33	2E-10	(East Asian)	0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1601935-G	0.294	5E-7	(Hispanic)	0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58671764	58671765	rs1601935	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	15q21.3	LIPC	rs1601935-G	0.36	8E-21		0.059	[0.047-0.071] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1032	chr15	58672133	58672134	rs12908474	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs12908474-?	NR	5E-10	(L_LDL_P)	0.060384657	NR unit increase	Illumina [609262]	N
1032	chr15	58673449	58673450	rs77250403	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q21.3	ALDH1A2	rs77250403-?	0.3343	6E-216		0.0913	[0.086-0.097] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644251	4E-348		0.167621	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644251	4E-348		0.167621	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644256	3E-332		0.157681	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644256	3E-332		0.157681	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644251	2E-334		0.164032	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58673449	58673449	rs796677417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs796677417-GA,rs796677417-GA	0.644251	2E-334		0.164032	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-T	NR	9E-11		0.0323	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-C	NR	9E-11		0.0593	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-G	NR	9E-11		0.0844	[0.059-0.11] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-T	NR	9E-11		0.2552	[0.18-0.33] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-T	NR	9E-11		0.0323	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62001736-T	NR	9E-11		0.0398	[0.028-0.052] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674050	58674051	rs62001736	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	15q21.3	AQP9, LIPC	rs62001736-?		6E-6	(EA)	0.12384403	[0.07-0.177] unit increase	Illumina [13620258] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs2043082-G	0.69218	8E-17	(1-oleoyl-GPE (18:1))	0.2	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs2043082-G	0.69218	1E-20	(1-stearoyl-2-oleoyl-GPE (18:0/18:1))	0.225	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	8E-34				Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	8E-17	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	6E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	4E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-36				Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-16	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	4E-27		0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-17	(Asian)	0.02	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	1E-9	(EA)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	7E-16	(Asian)	0.02	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	6E-9	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	4E-24		0.019	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	4E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	6E-14	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	4E-186	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	3E-97	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	3E-294				Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	1E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	7E-105	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	6E-162				Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	5E-14	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q21.3	AQP9, LIPC	rs2043082-A	NR	1E-218	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	9E-13	(Hispanic)	0.024	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	7E-9	(AA)	0.019	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	3E-163		0.024	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-66	(Asian)	0.024	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	1E-94	(EA)	0.025	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	6E-64	(Asian)	0.02408	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	5E-124		0.02405	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	3E-9	(HIspanic)	0.02413	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-6	(AA)	0.01841	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	15q21.3	AQP9, LIPC	rs2043082-A	NR	2E-50	(EA)	0.0252	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58674307	58674308	rs2043082	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	15q21.3	NR	rs2043082-?	NR	4E-30		0.04481	[0.037-0.053] unit increase novel	Illumina [6108953] (imputed)	N
1032	chr15	58674668	58674669	rs539901	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	15q21.3	LIPC	rs539901-G	0.109	8E-6	(Additive model)			Affymetrix [271817]	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	3E-10		0.0630004	[0.043-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	9E-103		0.269318	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	4E-26		0.113545	[0.092-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-13		0.0661876	[0.049-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	3E-83		0.238762	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-16		0.0920761	[0.07-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	4E-46		0.176282	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	6E-16		0.0892879	[0.068-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-11		0.0594	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-A	NR	1E-11		0.0399	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-11		0.0519	[0.037-0.067] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-11		0.0579	[0.041-0.075] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-G	NR	1E-11		0.09	[0.064-0.116] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	5E-39		0.204682	[0.17-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	2E-94		0.270762	[0.25-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	2E-86		0.245119	[0.22-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	2E-101		0.273002	[0.25-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-69		0.230376	[0.2-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-T	NR	1E-11		0.058	[0.041-0.075] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775041-C	NR	1E-11		0.0284	[0.02-0.037] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	2E-16		0.0951847	[0.072-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs4775041-C	NR	2E-21		0.102706	[0.082-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	15q21.3	ALDH1A2	rs4775041-?	0.783	2E-8		1.3947002	[1.24-1.56]	Affymetrix [at least 584061] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	6E-18	(M_HDL_PL)	0.0765008	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	5E-12	(FAw6)	0.059529293	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	3E-30	(TotPG)	0.10351104	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	3E-11	(M_HDL_P)	0.054884896	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-35	(PC)	0.118369766	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-24	(TotFA)	0.08065216	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-11	(PUFA)	0.055889677	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-10	(EstC)	0.07392197	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	1E-29	(XS_VLDL_PL)	0.11236243	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	1E-26	(TotCho)	0.09398631	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	9E-7	(EstC)	0.07265685	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	7E-21	(TotPG)	0.11419613	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	7E-18	(TotCho)	0.10368546	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	4E-8	(FAw6)	0.06606154	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	4E-10	(M_HDL_PL)	0.07839642	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	3E-8	(PUFA)	0.06805527	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	3E-25	(PC)	0.12655714	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-7	(M_HDL_P)	0.06554618	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-22	(XS_VLDL_PL)	0.11547899	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	2E-12	(TotFA)	0.08749205	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	4E-8	(FAw6_FA)	0.09000241	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	15q21.3	LIPC	rs4775041-?	NR	1E-7	(FAw6_FA)	0.09163728	NR unit increase	Illumina [609262]	N
1032	chr15	58674694	58674695	rs4775041	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs4775041-?	NR	1E-11		0.9648782	[0.69-1.24] unit increase	Illumina [31978362] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	NR	7E-16		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	0.707	1E-13	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	NR	1E-25		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	0.707	3E-22	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	NR	2E-102		0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	0.792	2E-12	(East Asian)	0.116	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	0.777	3E-8	(Hispanic)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs4775041-G	0.707	5E-84	(EA)	0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	15q21.3	LIPC	rs4775041-?	0.28	1E-7	(PE)			Affymetrix [187454]	N
1032	chr15	58674694	58674695	rs4775041	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	15q21.3	LIPC	rs4775041-C	0.33	2E-8		3.62	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1032	chr15	58674694	58674695	rs4775041	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	15q21.3	LIPC	rs4775041-C	0.33	3E-20		1.38	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1032	chr15	58675484	58675485	rs75525508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs75525508-A	NR	5E-14		0.0384	[0.028-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58675484	58675485	rs75525508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs75525508-A	NR	1E-20		0.0477	[0.038-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-C	NR	5E-10		0.0506	[0.035-0.066] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-G	NR	5E-10		0.0737	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-T	NR	5E-10		0.0488	[0.033-0.064] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-T	NR	5E-10		0.0466	[0.032-0.061] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-C	NR	5E-10		0.0503	[0.034-0.066] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-C	NR	5E-10		0.0612	[0.042-0.08] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676031	58676032	rs80123226	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs80123226-C	NR	5E-10		0.0682	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-G	NR	3E-27		0.0902	[0.074-0.106] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-T	NR	3E-27		0.1257	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-C	NR	2E-27		0.1254	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-T	NR	2E-27		0.0982	[0.08-0.116] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-G	NR	2E-27		0.1057	[0.086-0.125] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-A	NR	3E-27		0.125	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858759-C	NR	2E-27		0.1053	[0.086-0.124] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58676820	58676821	rs11858759	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q21.3	NR	rs11858759-G	0.7302	4E-8		0.0236	[0.015-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1032	chr15	58677894	58677895	rs187775	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	15q21.3	LIPC	rs187775-?		1E-7				Illumina [479403]	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704314	9E-49		0.0643345	[0.056-0.073] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-49		0.0632835	[0.055-0.072] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	4E-33		0.0522683	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	2E-61		0.072249	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704314	4E-95		0.0907263	[0.082-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	3E-71		0.0769367	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-275		0.149189	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	2E-15		0.0354775	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-324		0.154238	[0.15-0.16] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704314	1E-17		0.0370838	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-16		0.0370371	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	2E-21		0.0402484	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	7E-284		0.145971	[0.14-0.15] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	3E-248		0.134491	[0.13-0.14] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704314	2E-30		0.0497085	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	6E-32		0.050096	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-285		0.147414	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	1E-278		0.142132	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs10468017-C	0.704063	5E-178		0.120101	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	15q21.3		rs10468017-T	0.299324822	2E-10		0.146823	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299439844	7E-15		0.180295	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299439844	2E-54		0.356686	[0.31-0.4] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	6E-54		0.354704	[0.31-0.4] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299278647	4E-36		0.289181	[0.24-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	3E-45		0.324326	[0.28-0.37] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total phosphoglycerides	4,348 individuals	NA	15q21.3		rs10468017-T	0.299362174	4E-20		0.214333	[0.17-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299324822	6E-11		0.151977	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	1E-10		0.149247	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholines	4,348 individuals	NA	15q21.3		rs10468017-T	0.299339161	1E-17		0.19903	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL3	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	2E-31		0.269218	[0.22-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL2	4,348 individuals	NA	15q21.3		rs10468017-T	0.299623644	1E-14		0.179405	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial sphingomyelins	4,348 individuals	NA	15q21.3		rs10468017-T	0.298988331	5E-12		0.161295	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial serum total cholesterol	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	2E-10		0.147875	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very small VLDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299324822	4E-12		0.160951	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299278647	6E-11		0.151797	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phosphatidylcholine and other cholines	4,348 individuals	NA	15q21.3		rs10468017-T	0.30038629	5E-17		0.202208	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very small VLDL	4,348 individuals	NA	15q21.3		rs10468017-T	0.299324822	5E-13		0.167478	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	15q21.3		rs10468017-T	0.299408953	7E-15		0.181681	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial docosahexaenoic acid (22:6)	4,348 individuals	NA	15q21.3		rs10468017-T	0.299197571	2E-11		0.156635	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein A-I	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	1E-18		0.204199	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	15q21.3		rs10468017-T	0.299370975	2E-11		0.155566	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	1E-13		0.165281	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.298999126	4E-34		0.273894	[0.23-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295987735	3E-20		0.205597	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium LDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295862608	2E-53		0.340051	[0.3-0.38] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	4E-54		0.341996	[0.3-0.38] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295670543	3E-38		0.286793	[0.24-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	1E-46		0.317515	[0.27-0.36] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in HDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	1E-23		0.223219	[0.18-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total phosphoglycerides	4,734 individuals	NA	15q21.3		rs10468017-T	0.295815026	2E-22		0.217522	[0.17-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	3E-14		0.169067	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	5E-13		0.161069	[0.12-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	15q21.3		rs10468017-T	0.295724036	3E-11		0.148394	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholines	4,734 individuals	NA	15q21.3		rs10468017-T	0.295815026	1E-20		0.20792	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	1E-14		0.172103	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295670543	2E-9		0.133955	[0.09-0.178] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting serum total cholesterol	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	6E-12		0.153688	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting polyunsaturated fatty acids	4,734 individuals	NA	15q21.3		rs10468017-T	0.295642025	3E-14		0.169821	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	4E-15		0.175423	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295670543	2E-13		0.163721	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-6 fatty acids	4,734 individuals	NA	15q21.3		rs10468017-T	0.295560119	2E-13		0.163726	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	15q21.3		rs10468017-T	0.295642025	3E-9		0.133294	[0.09-0.177] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	1E-8		0.128126	[0.084-0.172] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	2E-14		0.170628	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295670543	1E-12		0.158057	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol	4,734 individuals	NA	15q21.3		rs10468017-T	0.295815026	6E-18		0.192361	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	15q21.3		rs10468017-T	0.295955471	9E-10		0.136945	[0.093-0.181] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting docosahexaenoic acid (22:6)	4,734 individuals	NA	15q21.3		rs10468017-T	0.295743427	6E-14		0.167864	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295905748	3E-14		0.169186	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	15q21.3		rs10468017-T	0.295670543	4E-8		0.122883	[0.079-0.167] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	15q21.3		rs10468017-T	0.295780735	5E-14		0.167786	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	3E-111		0.282158	[0.26-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	2E-27		0.117191	[0.096-0.138] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	2E-14		0.0688107	[0.051-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	3E-91		0.251652	[0.23-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	1E-17		0.0960269	[0.074-0.118] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	7E-50		0.184721	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	5E-16		0.0902232	[0.068-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	6E-41		0.210757	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	8E-104		0.285895	[0.26-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	2E-101		0.267573	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	1E-113		0.290975	[0.27-0.32] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	2E-75		0.241381	[0.22-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	1E-16		0.096697	[0.074-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	3E-22		0.105392	[0.084-0.127] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs10468017-T	NR	2E-10		0.0568334	[0.039-0.074] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	2,253 Korean ancestry cases and controls	NA	15q21.3	ALDH1A2	rs10468017-?	0.775	7E-6		1.6025641	[1.3-1.97]	Affymetrix [at least 584061] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs10468017-?	NR	4E-14		1.05299	[0.78-1.33] unit increase	Illumina [31978362] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	15q21.3	ALDH1A2	rs10468017-T	0.297184	8E-10		0.03763597	[0.026-0.05] unit increase	Affymetrix [7288503] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	NR	1E-15		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	0.715	3E-13	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	NR	4E-27		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	0.715	4E-23	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	NR	8E-117		0.089	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	0.795	2E-12	(East Asian)	0.117	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	0.78	1E-8	(Hispanic)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs10468017-C	0.715	3E-96	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q21.3	LIPC	rs10468017-T	0.29	3E-12	(1-palmitoylglycerophosphoethanolamine)	0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	15q21.3	LIPC	rs10468017-?	NR	7E-43	(levels)	0.0	[0.80-4.70] % increase	Illumina [NR] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	15q21.3	LIPC	rs10468017-T	0.33	3E-12	(HDL)	0.104	[0.075-0.133] mmol/l increase	Illumina [NR] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	15q21.3	LIPC	rs10468017-?	0.71	3E-12		1.19	[NR]	Affymetrix [6036699] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	15q21.3	LIPC	rs10468017-C	NR	6E-8	(HDLC-WC)	0.16	[0.10-0.22] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1032	chr15	58678511	58678512	rs10468017	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	15q21.3	LIPC	rs10468017-?	0.70	1E-8		1.22	[1.14-1.30]	Affymetrix [632932]	N
1032	chr15	58678511	58678512	rs10468017	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	15q21.3	LIPC	rs10468017-T	0.30	8E-23		0.1	[0.06-0.14] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	9E-53		0.0663822	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-117		0.094841	[0.087-0.103] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-143		0.105902	[0.098-0.114] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-65		0.0700528	[0.062-0.078] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-63		0.0703667	[0.062-0.079] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	9E-119		0.0977578	[0.089-0.106] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-80		0.0797734	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-289		0.154247	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-324		0.166834	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-22		0.0409565	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-214		0.129232	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	8E-73		0.0774769	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-109		0.0949237	[0.087-0.103] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-33		0.0518356	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-12		0.0297784	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-14		0.0334403	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-129		0.101773	[0.094-0.11] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-91		0.0861102	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	1E-122		0.101093	[0.093-0.11] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-70		0.0742366	[0.066-0.082] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-60		0.0673034	[0.059-0.075] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-281		0.146329	[0.14-0.15] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-31		0.0503566	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-76		0.0780323	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-148		0.105493	[0.098-0.113] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	5E-122		0.100722	[0.092-0.109] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	4E-69		0.0759505	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	1E-29		0.0485282	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-11		0.0280914	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-49		0.0617512	[0.054-0.07] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	1E-154		0.11189	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-35		0.052866	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs261290-T	0.34511	3E-70		0.0771366	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-139		0.104955	[0.097-0.113] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-161		0.117003	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-281		0.155508	[0.15-0.16] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	8E-201		0.131926	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	4E-53		0.0665488	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-20		0.0401327	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-13		0.0316685	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-34		0.0526908	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-204		0.127848	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	1E-294		0.150549	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	3E-114		0.0965237	[0.088-0.105] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	1E-161		0.112905	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-65		0.0732738	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261290-T	0.345352	2E-97		0.0895002	[0.081-0.098] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-8		0.0244908	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-126		0.100276	[0.092-0.108] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-47		0.0600579	[0.052-0.068] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-270		0.135384	[0.13-0.14] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-47		0.0626041	[0.054-0.071] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-267		0.141434	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-42		0.0595658	[0.051-0.068] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-78		0.0799617	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-22		0.0418848	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-29		0.048548	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-81		0.0802471	[0.072-0.089] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-75		0.0787323	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-25		0.0453766	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	9E-9		0.0249688	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	8E-28		0.0474096	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-97		0.0902082	[0.082-0.099] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	4E-21		0.0410217	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-58		0.0691271	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs261290-T	0.345359	2E-248		0.145554	[0.14-0.15] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-151		0.109925	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-330		0.162892	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	7E-86		0.0852043	[0.077-0.094] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	7E-129		0.105303	[0.097-0.114] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-22		0.0418787	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-9		0.0261751	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-24		0.0436632	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	4E-72		0.0781255	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-11		0.0284322	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	2E-53		0.0647309	[0.056-0.073] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-61		0.0722511	[0.064-0.081] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	6E-281		0.152935	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	1E-69		0.0766352	[0.068-0.085] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	3E-23		0.0431866	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	8E-22		0.0413412	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	8E-61		0.0691816	[0.061-0.077] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.345355	5E-35		0.0536278	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	6E-64		0.383171	[0.34-0.43] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	3E-23		0.227943	[0.18-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	15q21.3		rs261290-C	0.649920635	8E-12		0.152492	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	2E-22		0.223863	[0.18-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	7E-21		0.215468	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of VLDLD particles	4,348 individuals	NA	15q21.3		rs261290-C	0.649886155	1E-8		0.128087	[0.084-0.172] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	15q21.3		rs261290-C	0.649886155	2E-32		0.263393	[0.22-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large HDL particle concentration	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	1E-23		0.230508	[0.19-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	5E-21		0.215919	[0.17-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	15q21.3		rs261290-C	0.649920635	7E-11		0.14548	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large HDL	4,348 individuals	NA	15q21.3		rs261290-C	0.644964242	7E-23		0.226078	[0.18-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	8E-41		0.289068	[0.25-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649752541	3E-75		0.395706	[0.35-0.44] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	6E-40		0.285894	[0.24-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	1E-35		0.26935	[0.23-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	3E-34		0.264136	[0.22-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of VLDLD particles	4,734 individuals	NA	15q21.3		rs261290-C	0.652234896	1E-8		0.122309	[0.08-0.164] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	15q21.3		rs261290-C	0.652234896	2E-36		0.268791	[0.23-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	1E-36		0.273496	[0.23-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	15q21.3		rs261290-C	0.649603365	6E-34		0.26303	[0.22-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-C	NR	7E-13		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-A	NR	7E-13		0.0622	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-A	NR	7E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-A	NR	7E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-T	NR	7E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-C	NR	7E-13		0.0855	[0.062-0.109] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-C	NR	7E-13		0.0764	[0.056-0.097] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-G	NR	7E-13		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261290-A	NR	7E-13		0.0855	[0.062-0.109] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58678719	58678720	rs261290	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q21.3	AQP9, LIPC	rs261290-C	0.65	5E-45		14.1	z-score increase	Affymetrix [4311822] (imputed)	N
1032	chr15	58678719	58678720	rs261290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q21.3	ALDH1A2	rs261290-C	0.653928	2E-12		0.016420167	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1032	chr15	58678719	58678720	rs261290	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	15q21.3		rs261290-T	0.34	1E-20		0.0323	[0.025-0.039] unit decrease	NR [8806780] (imputed)	N
1032	chr15	58678719	58678720	rs261290	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	15q21.3		rs261290-T	0.34	6E-14		0.0269	[0.02-0.034] unit decrease	NR [8806780] (imputed)	N
1032	chr15	58678719	58678720	rs261290	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	15q21.3		rs261290-T	0.34	3E-13		0.0193	[0.014-0.024] unit decrease	NR [6098063] (imputed)	N
1032	chr15	58678719	58678720	rs261290	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q21.3	LIPC	rs261290-T	0.345868	1E-21		0.0209689	[0.017-0.025] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58678719	58678720	rs261290	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	15q21.3	LIPC	rs261290-?	NR	9E-13		0.01372	[0.0096-0.0178] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58678719	58678720	rs261290	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	15q21.3	LIPC	rs261290-T	0.347343	2E-29		0.0779563	[0.064-0.092] unit decrease	Affymetrix [9463307] (imputed)	N
1032	chr15	58678719	58678720	rs261290	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs261290-C	NR	6E-31	(Total_PE)	0.3699	[0.31-0.43] unit decrease	Illumina [~ 9300000] (imputed)	N
1032	chr15	58678719	58678720	rs261290	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs261290-C	NR	4E-31	(PE(18:0;0-20:4;0))	0.3683	[0.31-0.43] unit decrease	Illumina [~ 9300000] (imputed)	N
1032	chr15	58678719	58678720	rs261290	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	15q21.3	ALDH1A2	rs261290-C	0.3442	3E-25		0.121454455	[0.099-0.144] mg/dl decrease	Illumina [24111857] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs7350789-G	0.646053	1E-248		0.144797	[0.14-0.15] unit increase	NR [11722792] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs7350789-G	0.646053	2E-192		0.124104	[0.12-0.13] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs7350789-G	0.646053	5E-99		0.0904029	[0.082-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	15q21.3		rs7350789-A	0.357569489	9E-11		0.143914	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting sphingomyelins	4,734 individuals	NA	15q21.3		rs7350789-A	0.355478417	2E-12		0.150708	[0.11-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q21.3	ALDH1A2	rs7350789-A	0.354791	1E-13		0.017170137	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	15q21.3	LIPC	rs7350789-A	0.36	5E-8		0.11	[0.071-0.149] unit decrease	Illumina [NR] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	9E-10	(LA_FA)	0.05438878	NR unit decrease	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	8E-35	(L_HDL_FC)	0.10312867	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	8E-10	(DHA)	0.06674564	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	7E-32	(M_HDL_TG)	0.10872544	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	6E-28	(XL_HDL_P)	0.09362299	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	5E-11	(PUFA_FA)	0.057159528	NR unit decrease	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	4E-30	(XL_HDL_PL)	0.09544789	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	2E-85	(HDL_TG)	0.1738073	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	2E-14	(SFA)	0.0702734	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	2E-11	(MUFA_FA)	0.054938268	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	2E-10	(XL_HDL_C)	0.0665491	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	1E-27	(MUFA)	0.08421296	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	1E-25	(S_LDL_TG)	0.11972121	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	5E-7	(LA_FA)	0.061311882	NR unit decrease	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	4E-7	(DHA)	0.064160354	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	4E-19	(S_LDL_TG)	0.13139343	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	3E-18	(M_HDL_TG)	0.109545276	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	3E-13	(MUFA)	0.09118287	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	3E-12	(XL_HDL_PL)	0.08568997	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	2E-11	(SFA)	0.08209028	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	1E-47	(HDL_TG)	0.18179038	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	1E-12	(XL_HDL_P)	0.08727236	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs7350789-?	NR	1E-10	(L_HDL_FC)	0.09513239	NR unit increase	Illumina [609262]	N
1032	chr15	58679667	58679668	rs7350789	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs7350789-A	NR	4E-20	(PE(18:0;0-18:2;0))	0.2979	[0.23-0.36] unit increase	Illumina [~ 9300000] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	15q21.3	NR	rs7350789-A	0.346	1E-149				Affymetrix, Illumina [at least 2500000] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q21.3	ALDH1A2	rs7350789-A	0.3451	4E-78		0.0522	[0.047-0.058] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	NR	2E-18		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.654	4E-13	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.64	3E-6	(East Asian)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	NR	2E-28		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.654	4E-22	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.64	3E-7	(East Asian)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	NR	3E-124		0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.676	1E-7	(Hispanic)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.654	6E-100	(EA)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.64	4E-16	(East Asian)	0.113	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679667	58679668	rs7350789	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs7350789-G	0.628	4E-6	(AA)	0.104	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58679807	58679810	rs71884092	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs71884092-CAGA	0.671801	4E-38	(1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*)	0.313	[0.27-0.36] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58679807	58679810	rs71884092	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs71884092-CAGA	0.671801	4E-11	(1-linoleoyl-GPE (18:2)*)	0.154	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58679807	58679810	rs71884092	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs71884092-CAGA	0.671801	2E-31	(1-palmitoyl-2-linoleoyl-GPE (16:0/18:2))	0.267	[0.22-0.31] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58679807	58679810	rs71884092	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs71884092-CAGA	0.671801	1E-26	(1-palmitoyl-GPE (16:0))	0.261	[0.21-0.31] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58679807	58679810	rs71884092	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs71884092-CAGA	0.671801	1E-23	(1-palmitoyl-2-oleoyl-GPE (16:0/18:1))	0.24	[0.19-0.29] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58679811	58679812	rs191487796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs191487796-C	0.327942	8E-33	(1-stearoyl-2-arachidonoyl-GPE (18:0/20:4))	0.29	[0.24-0.34] unit increase	Illumina [13039987] (imputed)	N
1032	chr15	58679811	58679812	rs191487796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs191487796-C	0.327942	6E-25	(1-stearoyl-2-linoleoyl-GPE (18:0/18:2)*)	0.238	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
1032	chr15	58679811	58679812	rs191487796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs191487796-C	0.327942	6E-16	(2-stearoyl-GPE (18:0)*)	0.197	[0.15-0.24] unit increase	Illumina [13039987] (imputed)	N
1032	chr15	58679811	58679812	rs191487796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs191487796-C	0.327942	3E-23	(1-stearoyl-GPE (18:0))	0.242	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
1032	chr15	58679811	58679812	rs191487796	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs191487796-C	0.327942	3E-16	(1-arachidonoyl-GPE (20:4n6)*)	0.198	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1032	chr15	58680177	58680178	rs261291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs261291-T	0.644918	9E-197		0.129381	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680177	58680178	rs261291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261291-T	0.643927	1E-169		0.113799	[0.11-0.12] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680177	58680178	rs261291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261291-T	0.64392	1E-40		0.0577181	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680177	58680178	rs261291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261291-T	0.64392	9E-44		0.05987	[0.051-0.068] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680177	58680178	rs261291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q21.3		rs261291-C	NR	2E-16		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1032	chr15	58680177	58680178	rs261291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q21.3	ALDH1A2	rs261291-C	0.356683	2E-17		0.019711692	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1032	chr15	58680177	58680178	rs261291	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q21.3		rs261291-?	NR	10E-35		0.0261207	[0.022-0.03] unit decrease	NR [6912294] (imputed)	N
1032	chr15	58680177	58680178	rs261291	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	15q21.3		rs261291-T	0.644772	3E-40		0.027	[0.023-0.031] unit decrease	NR [7250403] (imputed)	N
1032	chr15	58680177	58680178	rs261291	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	15q21.3	NR	rs261291-C	0.35583	3E-28		0.022414	[0.018-0.026] unit decrease	Affymetrix [16668957] (imputed)	N
1032	chr15	58680177	58680178	rs261291	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs261291-?	NR	4E-97		0.02067	[0.019-0.023] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58680177	58680178	rs261291	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs261291-?	NR	1E-21		1.07376	[0.85-1.29] unit increase	Illumina [31978362] (imputed)	N
1032	chr15	58680177	58680178	rs261291	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	15q21.3	LIPC	rs261291-?		4E-84				NR [NR]	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	NR	1E-20		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.65	2E-13	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.548	2E-8	(East Asian)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	NR	1E-28		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.65	6E-21	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.548	3E-9	(East Asian)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	NR	1E-120		0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.65	3E-98	(EA)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.612	3E-6	(Hispanic)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.569	1E-7	(AA)	0.114	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261291-T	0.548	3E-14	(East Asian)	0.102	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	15q21.3	NR	rs261291-?	NR	3E-26		0.04531	[0.037-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1032	chr15	58680177	58680178	rs261291	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	15q21.3	NR	rs261291-?	NR	7E-109		0.1158	[0.11-0.13] unit increase novel	Illumina [6108953] (imputed)	N
1032	chr15	58680177	58680178	rs261291	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	15q21.3	LIPC	rs261291-C	0.37	6E-87		0.122	[0.11-0.13] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	4E-162		0.112899	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	1E-253		0.140924	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	3E-30		0.0469903	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	3E-29		0.0455763	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	3E-270		0.147632	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	3E-34		0.0498032	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs7177289-C	0.645987	6E-274		0.14835	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	2E-35		0.280259	[0.24-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	7E-35		0.277701	[0.23-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	2E-31		0.26274	[0.22-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.357895354	8E-17		0.184853	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	3E-29		0.253349	[0.21-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.357977686	6E-10		0.137304	[0.094-0.181] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	4E-33		0.270379	[0.23-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.357977686	5E-8		0.121417	[0.078-0.165] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large HDL	4,348 individuals	NA	15q21.3		rs7177289-T	0.361858211	5E-30		0.256749	[0.21-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	4E-31		0.251551	[0.21-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	3E-29		0.243795	[0.2-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL3	4,734 individuals	NA	15q21.3		rs7177289-T	0.355890767	8E-31		0.245322	[0.2-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL2	4,734 individuals	NA	15q21.3		rs7177289-T	0.35588684	6E-16		0.17269	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.355815589	2E-17		0.180921	[0.14-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.356386393	3E-10		0.134927	[0.093-0.177] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	2E-28		0.239955	[0.2-0.28] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phosphatidylcholine and other cholines	4,734 individuals	NA	15q21.3		rs7177289-T	0.355746432	2E-22		0.211462	[0.17-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	8E-32		0.254537	[0.21-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	1E-27		0.236141	[0.19-0.28] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	15q21.3		rs7177289-T	0.358261821	8E-30		0.245923	[0.2-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein A-I	4,734 individuals	NA	15q21.3		rs7177289-T	0.355815589	1E-19		0.193087	[0.15-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680183	58680184	rs7177289	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q21.3	LIPC	rs7177289-C	0.645118	5E-12		0.00366283	[0.0026-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs2414577-T	0.613586	1E-9		0.0258805	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2414577-T	0.613586	9E-21		0.0377714	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	15q21.3		rs2414577-C	0.385759826	3E-24		0.227326	[0.18-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in HDL	4,348 individuals	NA	15q21.3		rs2414577-C	0.381957222	1E-15		0.175206	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of LDL particles	4,348 individuals	NA	15q21.3		rs2414577-C	0.381957222	1E-31		0.255617	[0.21-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of LDL particles	4,734 individuals	NA	15q21.3		rs2414577-C	0.379587875	1E-26		0.224442	[0.18-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680637	58680638	rs2414577	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs2414577-C	NR	7E-9	(LPE(16:0;0))	0.1893	[0.13-0.25] unit increase	Illumina [~ 9300000] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs35853021-G	0.642361	5E-13		0.0292685	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs35853021-G	0.642368	6E-48		0.0596379	[0.052-0.068] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	15q21.3		rs35853021-G	0.642314	2E-12		0.0302559	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting saturated fatty acids	4,734 individuals	NA	15q21.3		rs35853021-T	0.356080786	1E-10		0.137856	[0.096-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-3 fatty acids	4,734 individuals	NA	15q21.3		rs35853021-T	0.356604996	3E-11		0.142227	[0.1-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q21.3		rs35853021-T	NR	1E-9		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	2E-105		0.262365	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	5E-29		0.115374	[0.095-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	7E-16		0.0693431	[0.052-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	4E-89		0.237522	[0.21-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	3E-19		0.0960977	[0.075-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	6E-48		0.172849	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	3E-15		0.0836399	[0.063-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-C	NR	2E-12		0.0651	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-A	NR	2E-12		0.0381	[0.028-0.049] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-T	NR	2E-12		0.1139	[0.082-0.146] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	5E-40		0.199199	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	7E-98		0.264751	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	1E-108		0.26446	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	3E-11		0.0691858	[0.049-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	3E-117		0.282351	[0.26-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	3E-74		0.228534	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-C	NR	2E-12		0.0707	[0.051-0.09] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-G	NR	2E-12		0.0662	[0.048-0.085] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-C	NR	2E-12		0.0414	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35853021-T	NR	2E-12		0.0416	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	7E-14		0.0834744	[0.062-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	4E-22		0.100276	[0.08-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35853021-T	NR	2E-12		0.0606503	[0.044-0.077] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680642	58680643	rs35853021	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	15q21.3	LIPC	rs35853021-?	NR	7E-76	(XL-HDL-TG)	0.31	[0.27-0.35] unit increase	Illumina [~ 7700000] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	1E-135		0.0973615	[0.09-0.105] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	4E-236		0.124591	[0.12-0.13] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	1E-198		0.122745	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	2E-144		0.101156	[0.093-0.109] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	1E-241		0.126794	[0.12-0.13] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	6E-58		0.0674712	[0.059-0.076] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	7E-185		0.111594	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	8E-137		0.0970429	[0.089-0.105] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	15q21.3		rs2043085-T	0.387315	3E-176		0.109573	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC5A8	5,361 Icelandic ancestry individuals	NA	15q21.3		rs2043085-T	0.4068	4E-14		0.146624	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	1E-99		0.249702	[0.23-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	6E-27		0.108775	[0.089-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	7E-15		0.0656553	[0.049-0.082] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	2E-84		0.226443	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	3E-18		0.0914136	[0.071-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	2E-45		0.164985	[0.14-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	1E-14		0.0805459	[0.06-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-A	NR	1E-13		0.0649	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-G	NR	1E-13		0.0865	[0.064-0.109] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-T	NR	1E-13		0.0731	[0.054-0.093] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-T	NR	1E-13		0.0628	[0.046-0.079] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-C	NR	1E-13		0.0871	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	9E-39		0.191721	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	2E-93		0.25323	[0.23-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	3E-104		0.253871	[0.23-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	1E-10		0.0661351	[0.046-0.086] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	2E-109		0.267136	[0.24-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	3E-74		0.224171	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-A	NR	1E-13		0.0538	[0.039-0.068] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-G	NR	1E-13		0.0682	[0.05-0.086] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-G	NR	1E-13		0.0869	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-G	NR	1E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043085-G	NR	1E-13		0.0644	[0.047-0.081] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	4E-13		0.0793937	[0.058-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	4E-21		0.095905	[0.076-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs2043085-T	NR	3E-12		0.0587017	[0.042-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q21.3	LIPC	rs2043085-T	0.387676	2E-73		0.00427233	[0.0038-0.0047] unit decrease	Affymetrix [13995440] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	15q21.3	LIPC	rs2043085-?	NR	4E-15	(EA)	1.1494253		Illumina [12023830] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	15q21.3	LIPC	rs2043085-T	0.47	2E-8	(HDL)	0.012	[0.00024-0.02376] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1032	chr15	58680953	58680954	rs2043085	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	15q21.3	LIPC	rs2043085-A	NR	1E-8	(HDLC-GLUC)	0.17	[0.11-0.23] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	6E-30		0.0456923	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	6E-30		0.0456923	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	4E-27		0.0436903	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	4E-27		0.0436903	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-17		0.0342562	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-17		0.0342562	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	1E-20		0.0395137	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	1E-20		0.0395137	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-60		0.0698337	[0.061-0.078] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-60		0.0698337	[0.061-0.078] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	8E-102		0.091093	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	8E-102		0.091093	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-107		0.0907296	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681533	58681533	rs753768034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs753768034-G,rs753768034-G	0.384371	2E-107		0.0907296	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58681534	58681534	rs35609148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q21.3		rs35609148-GT	NR	3E-54		0.0371	[0.032-0.042] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1032	chr15	58681534	58681534	rs35609148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	15q21.3		rs35609148-GT	NR	1E-13		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1032	chr15	58682363	58682364	rs72740841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs72740841-T	NR	3E-9		0.044	[0.029-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58682363	58682364	rs72740841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs72740841-T	NR	8E-12		0.0508	[0.036-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-C	NR	1E-13		0.054	[0.04-0.068] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-A	NR	1E-13		0.0685	[0.05-0.087] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-G	NR	1E-13		0.1691	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-T	NR	1E-13		0.0662	[0.049-0.084] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-G	NR	1E-13		0.1283	[0.094-0.162] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58682495	58682496	rs2043084	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2043084-A	NR	1E-13		0.0568	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1532085-A	0.384918	2E-155		0.113642	[0.11-0.12] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386032	3E-99		0.0862885	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386032	3E-82		0.078198	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386032	1E-45		0.0581405	[0.05-0.066] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1532085-A	0.384918	2E-144		0.108126	[0.1-0.116] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386032	4E-22		0.0389563	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386036	9E-171		0.113009	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1532085-A	0.384918	8E-81		0.0814245	[0.073-0.09] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1532085-A	0.386036	2E-168		0.114602	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1532085-A	0.384918	7E-113		0.0960421	[0.088-0.104] unit increase	NR [11722792] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	9E-100		0.250514	[0.23-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	3E-27		0.109679	[0.09-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	3E-15		0.0666864	[0.05-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	9E-86		0.228901	[0.21-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	6E-20		0.0962101	[0.076-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	5E-47		0.168228	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	2E-15		0.0827329	[0.062-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-A	NR	7E-24		0.0795	[0.064-0.095] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-A	NR	7E-24		0.0722	[0.058-0.086] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-A	NR	6E-24		0.1172	[0.094-0.14] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-C	NR	6E-24		0.0523	[0.042-0.062] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-A	NR	6E-24		0.103	[0.083-0.123] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	1E-39		0.194144	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	7E-93		0.253177	[0.23-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	4E-106		0.256735	[0.23-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	4E-12		0.0712708	[0.051-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	6E-112		0.270885	[0.25-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	5E-75		0.225862	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-A	NR	6E-24		0.0938	[0.076-0.112] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-T	NR	6E-24		0.0694	[0.056-0.083] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-G	NR	6E-24		0.0777	[0.063-0.093] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-T	NR	6E-24		0.1429	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1532085-T	NR	7E-24		0.0602	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	1E-12		0.07781	[0.056-0.099] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	7E-21		0.0954561	[0.075-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1532085-A	NR	1E-12		0.0598281	[0.043-0.076] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	15q21.3		rs1532085-A	0.383	1E-8		0.05	[0.032-0.068] unit increase	Affymetrix [812428]	N
1032	chr15	58683365	58683366	rs1532085	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		15q21.3	ALDH1A2	rs1532085-A	NR	9E-10		0.008666	[0.0045-0.0128] nmol/l increase	NR [19000000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q21.3	intergenic	rs1532085-A		4E-15		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	15q21.3		rs1532085-?	NR	6E-25		0.082	[0.066-0.098] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-A	0.386452	3E-51		0.0308141	[0.027-0.035] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-A	0.386409	9E-16		0.017242	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.386461	3E-13		0.0149827	[0.011-0.019] unit increase	NR [NR]	N
1032	chr15	58683365	58683366	rs1532085	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs1532085-?	NR	2E-83		0.01819	[0.016-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	9E-45	(XS_VLDL_FC)	0.14934805	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	9E-32	(L_HDL_CE)	0.1045856	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	8E-12	(Serum_C)	0.07904208	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	6E-74	(L_HDL_TG)	0.1949246	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	6E-19	(S_VLDL_L)	0.060541064	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	6E-11	(HDL3_C)	0.07166508	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	5E-50	(L_HDL_P)	0.11360955	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	5E-46	(IDL_PL)	0.095103495	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	5E-32	(S_VLDL_C)	0.09050984	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	5E-23	(XL_HDL_L)	0.0951767	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-47	(XL_HDL_TG)	0.16946794	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-18	(S_VLDL_CE)	0.076837495	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-16	(IDL_C)	0.06878999	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-48	(IDL_P)	0.10953996	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-29	(HDL2_C)	0.054096222	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-19	(Remnant_C)	0.084320836	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-16	(XS_VLDL_CE)	0.107279025	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-11	(XL_HDL_FC)	0.062062085	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-49	(XS_VLDL_L)	0.15250725	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-42	(HDL_C)	0.06431696	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-33	(S_VLDL_FC)	0.08897158	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-18	(XS_VLDL_C)	0.116394006	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-15	(S_VLDL_PL)	0.07249342	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-15	(LDL_D)	0.10680944	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-13	(S_HDL_TG)	0.07723854	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-10	(FAw6_FA)	0.055791527	NR unit decrease	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-9	(Serum_TG)	0.04766495	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-58	(XS_VLDL_TG)	0.13074026	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-50	(XS_VLDL_P)	0.1423958	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-36	(L_HDL_L)	0.11400284	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-21	(ApoA1)	0.08734269	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-13	(S_VLDL_P)	0.049979195	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-12	(L_LDL_PL)	0.06319349	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-10	(IDL_CE)	0.0629485	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-9	(XL_HDL_L)	0.0853106	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-61	(L_HDL_TG)	0.20530656	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-17	(XS_VLDL_C)	0.1229284	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-15	(IDL_P)	0.11560253	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-13	(XS_VLDL_CE)	0.105751224	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	7E-13	(S_HDL_TG)	0.08955071	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	5E-6	(IDL_CE)	0.06735248	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-9	(S_VLDL_FC)	0.08684096	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-8	(Serum_C)	0.081478536	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-32	(XS_VLDL_P)	0.14359534	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	4E-25	(XS_VLDL_TG)	0.13007617	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-9	(S_VLDL_PL)	0.074650936	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-42	(XL_HDL_TG)	0.16935521	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-23	(XS_VLDL_FC)	0.14599411	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	3E-14	(ApoA1)	0.09308377	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-8	(S_VLDL_C)	0.08348236	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-7	(S_VLDL_CE)	0.07733865	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-7	(IDL_C)	0.076431885	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-6	(HDL_C)	0.069876485	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-24	(XS_VLDL_L)	0.1499714	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-22	(L_HDL_P)	0.120991126	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-15	(L_HDL_L)	0.11655516	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-13	(LDL_D)	0.10960441	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	2E-10	(IDL_PL)	0.09398883	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-8	(Remnant_C)	0.0835205	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-7	(HDL3_C)	0.07799091	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1532085-?	NR	1E-12	(L_HDL_CE)	0.10512086	NR unit increase	Illumina [609262]	N
1032	chr15	58683365	58683366	rs1532085	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs1532085-?	NR	9E-25		1.156662	[0.94-1.38] unit decrease	Illumina [31978362] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	15q21.3		rs1532085-A	0.4038	9E-8		0.013	[0.0083-0.0177] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	15q21.3		rs1532085-A	0.4113	1E-65		0.0185	[0.016-0.021] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	NR	2E-19		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.49	8E-9	(East Asian)	0.083	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.378	8E-12	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	NR	2E-27		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.49	7E-10	(East Asian)	0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.378	2E-20	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	NR	2E-116		0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.52	4E-6	(AA)	0.098	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.49	2E-12	(East Asian)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.378	4E-98	(EA)	0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1532085-A	0.376	7E-6	(Hispanic)	0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	HDL cholesterol	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	15q21.3	LIPC	rs1532085-A	0.403	8E-6	(Filipino)	1.634	[1.56-1.70] unit decrease	Affymetrix, Illumina [up to 12553142] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	15q21.3	LIPC	rs1532085-A	0.367	1E-213	(Trans-ethnic initial)	0.107	[0.1-0.11] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-G	0.6	9E-155	(Triglycerides in very large HDL)	0.26	[0.24-0.28] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	15q21.3	LIPC	rs1532085-G	0.544	6E-16		0.104	[0.079-0.129] unit decrease	Illumina [286795]	N
1032	chr15	58683365	58683366	rs1532085	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	LIPC	rs1532085-A	0.40	2E-18		0.031	[NR] mg/dL increase	NR [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	LIPC	rs1532085-A	0.4	1E-188		0.107	[NR] unit increase	NR [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	15q21.3	LIPC	rs1532085-A	0.40	7E-47		0.054	[NR] unit increase	NR [NR] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	ADAM10	rs1532085-?	NR	4E-12	(LPE 16:0)	0.24211231	[0.17-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q21.3	LIPC	rs1532085-G	0.59	7E-11	(Hgb)	0.034	[0.022-0.046] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-?	0.44	9E-104				Illumina [~ 2000000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	15q21.3	LIPC	rs1532085-G	0.57	5E-24	(HDL)	0.13	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-G	0.22	2E-13		2.99	[2.11-3.87] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-A	0.39	3E-96		1.45	[1.29-1.61] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	15q21.3	LIPC	rs1532085-A	0.39	9E-20		1.54	[1.15-1.93] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1032	chr15	58683365	58683366	rs1532085	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	LIPC	rs1532085-?	NR	9E-15	(HDL-C.assay, fasting)	1.421	[NR] unit increase	Illumina [335603]	N
1032	chr15	58683365	58683366	rs1532085	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	LIPC	rs1532085-?	NR	4E-16	(IDL.total, fasting)	0.112	[NR] unit increase	Illumina [335603]	N
1032	chr15	58683365	58683366	rs1532085	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	15q21.3	LIPC	rs1532085-?	NR	1E-19	(IDL.total, whole)	0.107	[NR] unit increase	Illumina [335603]	N
1032	chr15	58683365	58683366	rs1532085	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	15q21.3	LIPC	rs1532085-G	0.59	1E-35		0.13	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1032	chr15	58683365	58683366	rs1532085	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	15q21.3	LIPC	rs1532085-G	0.59	4E-7		0.05	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1032	chr15	58683365	58683366	rs1532085	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish founder individuals	NA	15q21.3	LIPC	rs1532085-A	0.44	2E-10		0.05	[0.03-0.06] mmol/l increase	Illumina [329091]	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-C	NR	7E-26		0.0677	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-A	NR	7E-26		0.0677	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-T	NR	7E-26		0.0792	[0.065-0.094] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-G	NR	8E-26		0.0645	[0.053-0.076] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-C	NR	7E-26		0.0695	[0.057-0.082] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-A	NR	7E-26		0.0707	[0.058-0.084] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58683541	58683542	rs12905732	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12905732-T	NR	8E-26		0.0645	[0.053-0.076] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-G	NR	2E-27		0.1026	[0.084-0.121] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-T	NR	1E-27		0.0638	[0.052-0.075] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-G	NR	2E-27		0.126	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-C	NR	2E-27		0.0619	[0.051-0.073] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-C	NR	2E-27		0.1381	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58684056	58684057	rs11853674	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11853674-C	NR	2E-27		0.0854	[0.07-0.101] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58684281	58684282	rs16940170	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	15q21.3	NR	rs16940170-?	NR	8E-6		1.2610341	[1.14-1.39]	Affymetrix [at least 584061] (imputed)	N
1032	chr15	58684281	58684282	rs16940170	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	15q21.3	LOC101928635	rs16940170-?	NR	4E-18				Affymetrix [344366]	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-A	NR	2E-11		0.084	[0.06-0.108] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-T	NR	2E-11		0.0461	[0.033-0.059] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-T	NR	2E-11		0.0485	[0.034-0.063] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-C	NR	2E-11		0.0632	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-C	NR	2E-11		0.057	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4775044-G	NR	2E-11		0.0621	[0.044-0.08] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	15q21.3	ADAM10	rs4775044-?	NR	4E-6		0.0438743	unit decrease	NR [10687077] (imputed)	N
1032	chr15	58684966	58684967	rs4775044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q21.3	NR	rs4775044-G	0.528203	8E-10		0.012332	[0.0084-0.0163] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1032	chr15	58685766	58685767	rs555096714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs555096714-G	0.998776	2E-8		0.337448	[0.22-0.45] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58685969	58685970	rs8042174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8042174-A	NR	6E-10		0.0628	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58685969	58685970	rs8042174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8042174-T	NR	6E-10		0.0628	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58685969	58685970	rs8042174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8042174-C	NR	6E-10		0.0683	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58685969	58685970	rs8042174	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs8042174-?	NR	4E-13		0.01156	[0.0085-0.0146] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58685969	58685970	rs8042174	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs8042174-?	NR	5E-14		0.01138	[0.0084-0.0144] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1032	chr15	58686156	58686157	rs261298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261298-C	NR	7E-13		0.0431	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58686156	58686157	rs261298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261298-G	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686156	58686157	rs261298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261298-T	NR	7E-13		0.0426	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686156	58686157	rs261298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261298-C	NR	7E-13		0.0781	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686156	58686157	rs261298	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261298-A	NR	7E-13		0.0766	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686251	58686252	rs261299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261299-A	NR	7E-13		0.0646	[0.047-0.082] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686251	58686252	rs261299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261299-A	NR	7E-13		0.0613	[0.045-0.078] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686251	58686252	rs261299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261299-A	NR	7E-13		0.0744	[0.054-0.095] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58686251	58686252	rs261299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261299-T	NR	7E-13		0.1871	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686251	58686252	rs261299	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261299-G	NR	7E-13		0.0425	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	5E-24		0.169825	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	3E-19		0.148662	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	2E-10		0.13418	[0.093-0.176] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	1E-20		0.164728	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	6E-24		0.168761	[0.14-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	4E-25		0.177852	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686337	58686338	rs16940174	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940174-A	NR	1E-11		0.118706	[0.084-0.153] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58686753	58686754	rs7164909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7164909-G	NR	2E-10		0.058	[0.04-0.076] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58686753	58686754	rs7164909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7164909-C	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58686753	58686754	rs7164909	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7164909-C	NR	2E-10		0.1017	[0.07-0.133] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687039	58687040	rs75663614	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs75663614-C	NR	3E-10		0.0779	[0.054-0.102] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687529	58687530	rs7171102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7171102-A	NR	2E-10		0.0379	[0.026-0.05] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687529	58687530	rs7171102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7171102-A	NR	2E-10		0.0767	[0.053-0.1] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687529	58687530	rs7171102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7171102-C	NR	2E-10		0.0469	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687529	58687530	rs7171102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7171102-G	NR	2E-10		0.1048	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687529	58687530	rs7171102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs7171102-A	NR	2E-10		0.1048	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687789	58687790	rs495348	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	15q21.3	NR	rs495348-?	NR	8E-6		1.2594458	[1.14-1.39]	Affymetrix [at least 584061] (imputed)	N
1032	chr15	58687789	58687790	rs495348	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	15q21.3	LOC101928635	rs495348-?	NR	3E-18				Affymetrix [344366]	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	3E-68		0.202475	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	6E-20		0.0911152	[0.072-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	7E-57		0.181868	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	5E-13		0.0745512	[0.054-0.095] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	3E-31		0.133252	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	5E-11		0.0671905	[0.047-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs493258-C	NR	2E-11		0.0617	[0.044-0.08] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs493258-G	NR	2E-11		0.0828	[0.058-0.107] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	8E-26		0.152772	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	6E-63		0.203488	[0.18-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	2E-65		0.196576	[0.17-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	1E-74		0.216125	[0.19-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	6E-50		0.179682	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs493258-C	NR	2E-11		0.0361	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	1E-12		0.0760845	[0.055-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs493258-T	NR	1E-14		0.0771945	[0.058-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58687879	58687880	rs493258	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs493258-?	NR	4E-27	(IDL_L)	0.07406151	NR unit decrease	Illumina [609262]	N
1032	chr15	58687879	58687880	rs493258	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs493258-?	NR	2E-22	(VLDL_C)	0.06686083	NR unit decrease	Illumina [609262]	N
1032	chr15	58687879	58687880	rs493258	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs493258-?	NR	7E-7	(IDL_L)	0.07380134	NR unit decrease	Illumina [609262]	N
1032	chr15	58687879	58687880	rs493258	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	15q21.3	intergenic	rs493258-C	0.55	2E-8		1.16	[1.10-1.22]	Affymetrix [632932]	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	5E-11		0.206656	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	1E-9		0.186592	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	2E-11		0.214442	[0.15-0.28] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	1E-11		0.213367	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	1E-9		0.187362	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	8E-10		0.203275	[0.14-0.27] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	3E-10		0.192549	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	8E-11		0.204605	[0.14-0.27] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	3E-9		0.181684	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
1032	chr15	58687931	58687932	rs76438892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs76438892-A	0.996432	8E-12		0.211766	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
1032	chr15	58688185	58688186	rs4238329	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4238329-T	NR	1E-11		0.0627	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58688185	58688186	rs4238329	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs4238329-C	NR	1E-11		0.0403	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58688466	58688467	rs920915	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	15q21.3	LIPC	rs920915-C	0.48	3E-11		1.13	[1.09-1.17]	Affymetrix, Illumina [2442884] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial polyunsaturated fatty acids	4,348 individuals	NA	15q21.3		rs11855284-C	0.192538497	4E-8		0.150294	[0.097-0.204] mmol/l increase	Illumina [7701709] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	5E-59		0.232499	[0.2-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	2E-23		0.12283	[0.099-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	8E-50		0.210182	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	1E-14		0.0985092	[0.073-0.124] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	2E-29		0.159776	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	6E-11		0.0829918	[0.058-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11855284-C	NR	2E-27		0.0877	[0.072-0.104] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11855284-A	NR	2E-27		0.0833	[0.068-0.098] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11855284-C	NR	2E-27		0.0565	[0.046-0.067] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	2E-23		0.178607	[0.14-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	3E-59		0.24404	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	4E-57		0.226873	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	3E-61		0.241256	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	4E-52		0.227331	[0.2-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11855284-T	NR	2E-27		0.1389	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11855284-C	NR	8E-15		0.0959186	[0.072-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	7E-23		0.0303	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	2E-29		0.0337	[0.028-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	2E-84		0.0583	[0.052-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	6E-31		0.0346	[0.029-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	5E-15		0.0235	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	7E-255		0.1065	[0.1-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	6E-17		0.0251	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689186	58689187	rs11855284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs11855284-C	NR	2E-349		0.1252	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58689196	58689197	rs11858481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858481-T	NR	2E-27		0.0617	[0.051-0.073] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689196	58689197	rs11858481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858481-A	NR	2E-27		0.0925	[0.076-0.109] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58689196	58689197	rs11858481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858481-A	NR	2E-27		0.0834	[0.068-0.098] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689196	58689197	rs11858481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858481-C	NR	2E-27		0.125	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58689196	58689197	rs11858481	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11858481-G	NR	2E-27		0.0834	[0.068-0.098] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58690753	58690754	rs415799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs415799-T	NR	1E-11		0.176	[0.13-0.23] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58690753	58690754	rs415799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs415799-T	NR	1E-11		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58690753	58690754	rs415799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs415799-C	NR	1E-11		0.0597	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58690753	58690754	rs415799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs415799-C	NR	1E-11		0.0661	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58690753	58690754	rs415799	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs415799-T	NR	1E-11		0.0661	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58691201	58691202	rs76898656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	15q21.3		rs76898656-A	0.269555	4E-10		0.0338894	[0.023-0.044] unit increase	Illumina [13461863] (imputed)	N
1032	chr15	58692094	58692095	rs443401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs443401-C	0.523543	4E-11		0.0263337	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58692094	58692095	rs443401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs443401-C	0.523543	7E-11		0.0262252	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58692094	58692095	rs443401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	15q21.3		rs443401-C	0.523543	3E-11		0.0274026	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-C	NR	1E-11		0.0667	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-C	NR	1E-11		0.0329	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-A	NR	1E-11		0.116	[0.082-0.15] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-C	NR	1E-11		0.0465	[0.033-0.06] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-G	NR	1E-11		0.0808	[0.057-0.104] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692094	58692095	rs443401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs443401-C	NR	1E-11		0.0892	[0.063-0.115] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58692147	58692148	rs35128881	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35128881-G	NR	2E-12		0.0774	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58692147	58692148	rs35128881	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35128881-A	NR	2E-12		0.0604	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58692147	58692148	rs35128881	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35128881-T	NR	2E-12		0.1142	[0.082-0.146] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692147	58692148	rs35128881	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35128881-T	NR	2E-12		0.1059	[0.076-0.135] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692147	58692148	rs35128881	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs35128881-T	NR	2E-12		0.0398	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692680	58692681	rs56903760	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	15q21.3	AQP9, LIPC	rs56903760-?	NR	2E-8		0.0334	[0.022-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1032	chr15	58692714	58692715	rs12906722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12906722-C	NR	8E-26		0.0928	[0.076-0.11] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692714	58692715	rs12906722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12906722-A	NR	8E-26		0.1023	[0.083-0.121] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692714	58692715	rs12906722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12906722-G	NR	9E-26		0.078	[0.063-0.093] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692714	58692715	rs12906722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12906722-T	NR	9E-26		0.0843	[0.069-0.1] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692714	58692715	rs12906722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12906722-G	NR	8E-26		0.1991	[0.16-0.24] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692935	58692936	rs16940204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940204-G	NR	2E-22		0.0912	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692935	58692936	rs16940204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940204-A	NR	2E-22		0.1221	[0.098-0.147] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692935	58692936	rs16940204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940204-G	NR	2E-22		0.0827	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692935	58692936	rs16940204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940204-A	NR	2E-22		0.1609	[0.13-0.19] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58692935	58692936	rs16940204	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs16940204-A	NR	2E-22		0.0977	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs16940212-T	NR	2E-10		0.0955417	[0.066-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940212-T	NR	2E-10		0.0997544	[0.069-0.131] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940212-T	NR	3E-10		0.0959496	[0.066-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	15q21.3	NR	rs16940212-?	NR	4E-6		1.2562814	[1.14-1.38]	Affymetrix [at least 584061] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	15q21.3	ALDH1A2	rs16940212-T	0.3414	2E-18	(HDL)	0.02988	NR unit increase	Affymetrix [305158]	N
1032	chr15	58694019	58694020	rs16940212	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	15q21.3	Intergenic	rs16940212-?		6E-12				Affymetrix [at least 805769] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	15q21.3	LOC101928635	rs16940212-?	NR	4E-20				Affymetrix [344366]	N
1032	chr15	58694019	58694020	rs16940212	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	15q21.3	LIPC	rs16940212-T	0.3	1E-25	(BMI unadjusted)	0.102	[0.082-0.122] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1032	chr15	58694019	58694020	rs16940212	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	15q21.3	intergenic	rs16940212-T	0.34	1E-24		0.0222	[0.018-0.027] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1032	chr15	58694862	58694863	rs78042482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs78042482-A	NR	2E-9		0.0665	[0.045-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58696280	58696281	rs75672055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs75672055-G	NR	2E-18		0.0693	[0.054-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58696280	58696281	rs75672055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs75672055-G	NR	7E-23		0.0779	[0.062-0.093] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58696299	58696300	rs723967	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs723967-T	0.488951	4E-10		0.0259794	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58697833	58697834	rs12440032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440032-T	NR	5E-27		0.0674	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58697833	58697834	rs12440032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440032-T	NR	5E-27		0.121	[0.099-0.143] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58697833	58697834	rs12440032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440032-G	NR	6E-27		0.0729	[0.06-0.086] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58697833	58697834	rs12440032	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440032-A	NR	6E-27		0.1224	[0.1-0.14] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58698356	58698357	rs12440217	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440217-G	NR	6E-27		0.0695	[0.057-0.082] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58698356	58698357	rs12440217	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs12440217-C	NR	6E-27		0.0886	[0.073-0.105] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58699009	58699010	rs11856159	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	15q21.3		rs11856159-C	0.876967	5E-6		0.0132076	[0.0076-0.0189] unit decrease	Illumina [13900000] (imputed)	N
1032	chr15	58699009	58699010	rs11856159	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11856159-C	NR	2E-27		0.0736	[0.06-0.087] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58699009	58699010	rs11856159	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11856159-C	NR	2E-27		0.1252	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	ALDH1A2, LIPC	rs13329672-C	0.746816	2E-20	(1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*)	0.245	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs13329672-?	NR	3E-14		0.9648432	[0.72-1.21] unit increase	Illumina [31978362] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	NR	2E-10		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	0.735	1E-10	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	NR	8E-16		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	0.735	4E-16	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	NR	3E-54		0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	0.815	7E-6	(East Asian)	0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs13329672-C	0.735	1E-46	(EA)	0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1032	chr15	58699936	58699937	rs13329672	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	15q21.3	NR	rs13329672-?	NR	7E-37		0.0965	[0.082-0.111] unit increase novel	Illumina [6108953] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	2E-39		0.199003	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	2E-15		0.10376	[0.078-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	6E-35		0.18453	[0.16-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	1E-18		0.132319	[0.1-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17240869-C	NR	5E-22		0.1022	[0.081-0.123] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	2E-18		0.159363	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	4E-38		0.205178	[0.17-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	5E-39		0.196643	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	8E-43		0.211544	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58700310	58700311	rs17240869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17240869-C	NR	6E-34		0.191721	[0.16-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58701550	58701551	rs17240876	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17240876-G	NR	5E-22		0.0975	[0.078-0.117] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58701550	58701551	rs17240876	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17240876-A	NR	5E-22		0.0919	[0.073-0.111] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58701930	58701931	rs150364420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs150364420-G	NR	5E-24		0.0784	[0.063-0.094] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58701930	58701931	rs150364420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs150364420-G	NR	5E-24		0.0894	[0.072-0.107] unit increase	Illumina [6720657] (imputed)	N
1032	chr15	58702863	58702864	rs17821310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17821310-A	NR	6E-14		0.0775	[0.057-0.098] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58702863	58702864	rs17821310	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17821310-G	NR	6E-14		0.1708	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	2E-55		0.18218	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	1E-14		0.0770009	[0.057-0.097] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	6E-45		0.161129	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	3E-12		0.0721996	[0.052-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	8E-28		0.125352	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	7E-22		0.140363	[0.11-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	2E-48		0.178096	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	1E-53		0.178075	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	2E-58		0.191011	[0.17-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	2E-39		0.159565	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703068	58703069	rs17821316	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17821316-A	NR	2E-12		0.0705218	[0.051-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	6E-10		0.190639	[0.13-0.25] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	8E-10		0.199102	[0.14-0.26] unit increase	NR [11722792] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	2E-8		0.18275	[0.12-0.25] unit increase	NR [11722792] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	2E-8		0.176037	[0.11-0.24] unit increase	NR [11722792] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	2E-8		0.178242	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
1032	chr15	58703715	58703716	rs149877054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs149877054-C	0.99621	3E-8		0.169937	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
1032	chr15	58705942	58705943	rs72740858	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs72740858-G	NR	3E-10		0.261953	[0.18-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58705942	58705943	rs72740858	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs72740858-G	NR	5E-13		0.312637	[0.23-0.4] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706845	58706846	rs414846	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	15q21.3	NR	rs414846-?		6E-8	(TGFB1_LAP)	0.2971	[NR] unit decrease	Illumina [NR]	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	1E-23		0.121134	[0.097-0.145] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	5E-11		0.0682952	[0.048-0.089] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	2E-16		0.0981872	[0.075-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	1E-10		0.0768007	[0.053-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	3E-22		0.123089	[0.098-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	6E-16		0.0972607	[0.074-0.121] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	2E-19		0.110947	[0.087-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58706910	58706911	rs62000869	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs62000869-G	NR	1E-16		0.104722	[0.08-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58707989	58707990	rs79341002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs79341002-G	NR	3E-13		0.251749	[0.18-0.32] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58707989	58707990	rs79341002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs79341002-G	NR	2E-11		0.230403	[0.16-0.3] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58707989	58707990	rs79341002	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs79341002-G	NR	5E-14		0.26493	[0.2-0.33] unit decrease	Affymetrix [87696910] (imputed)	N
1032	chr15	58708442	58708443	rs79419121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs79419121-C	NR	5E-10		0.0472	[0.032-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58708442	58708443	rs79419121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs79419121-C	NR	2E-15		0.063	[0.048-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58708442	58708443	rs79419121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs79419121-C	NR	1E-19		0.0719	[0.056-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58712202	58712203	rs11857380	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q21.3	LIPC	rs11857380-C	0.131	3E-6	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	1E-21		0.117706	[0.094-0.142] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	7E-15		0.0947687	[0.071-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	2E-21		0.123311	[0.098-0.149] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	1E-16		0.101386	[0.077-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	7E-19		0.11156	[0.087-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58712944	58712945	rs11854656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11854656-C	NR	6E-16		0.104116	[0.079-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58714238	58714239	rs117338748	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q21.3	LIPC	rs117338748-A	0.0194803597464322	2E-8	(G_Veillonella_HB)	1.06029	[0.69-1.43] unit increase	Illumina [7711310] (imputed)	N
1032	chr15	58714786	58714787	rs11631178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs11631178-C	NR	5E-15		0.0321	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58714786	58714787	rs11631178	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.3	LIPC	rs11631178-T	0.896191	2E-11		0.0210646	[0.015-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	1E-25		0.124321	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	4E-21		0.110848	[0.088-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	9E-13		0.083895	[0.061-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	2E-25		0.130067	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	3E-24		0.12003	[0.097-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	5E-24		0.122595	[0.099-0.146] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs375372-T	NR	1E-19		0.112664	[0.088-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1032	chr15	58716614	58716615	rs375372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.3	NR	rs375372-G	NR	1E-12		0.0173	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58716614	58716615	rs375372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs375372-G	NR	2E-42		0.0333	[0.029-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58716614	58716615	rs375372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q21.3	NR	rs375372-G	NR	2E-13		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1032	chr15	58716614	58716615	rs375372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs375372-G	NR	7E-122		0.0597	[0.055-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58716614	58716615	rs375372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs375372-G	NR	3E-174		0.0717	[0.067-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58717400	58717401	rs78936960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs78936960-A	NR	7E-10		0.0273	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1032	chr15	58718376	58718377	rs111529807	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs111529807-G	0.989726	2E-8		0.121384	[0.079-0.164] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58718376	58718377	rs111529807	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs111529807-G	0.989726	6E-9		0.124765	[0.083-0.167] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58718376	58718377	rs111529807	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs111529807-G	0.989726	7E-9		0.127678	[0.085-0.171] unit increase	NR [11722792] (imputed)	N
1032	chr15	58718529	58718529	rs11402457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs11402457-C	0.698504	1E-420		0.195616	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58718529	58718529	rs11402457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs11402457-C	0.698504	4E-338		0.175028	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1032	chr15	58718997	58718998	rs7170361	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs7170361-T	0.71459	2E-344		0.180348	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58720261	58720262	rs117966452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs117966452-C	NR	1E-11		0.37575	[0.27-0.48] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58720261	58720262	rs117966452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs117966452-C	NR	7E-11		0.0729	[0.051-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58720261	58720262	rs117966452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs117966452-C	NR	6E-20		0.1069	[0.084-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58720261	58720262	rs117966452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs117966452-C	NR	3E-27		0.1267	[0.1-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58720693	58720694	rs74019436	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q21.3	NR	rs74019436-C	NR	5E-6		1.806	[1.40-2.33]	Illumina [13976150] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	7E-35		0.143118	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	2E-11		0.0670089	[0.047-0.087] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	6E-28		0.125676	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	2E-15		0.0914188	[0.069-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11857386-C	NR	2E-27		0.0879	[0.072-0.104] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11857386-C	NR	2E-27		0.1261	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11857386-G	NR	2E-27		0.0788	[0.064-0.093] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	5E-16		0.118011	[0.089-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	5E-24		0.123094	[0.099-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	3E-29		0.129464	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	2E-34		0.144892	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11857386-G	NR	2E-21		0.115107	[0.091-0.139] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58721167	58721168	rs11857386	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11857386-C	NR	2E-27		0.073	[0.06-0.086] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58721301	58721302	rs35684611	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35684611-G	NR	1E-10		0.108031	[0.075-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58721301	58721302	rs35684611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs35684611-G	NR	6E-10		0.021	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58721301	58721302	rs35684611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs35684611-G	NR	2E-30		0.0406	[0.034-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58721301	58721302	rs35684611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs35684611-G	NR	3E-41		0.0478	[0.041-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	3E-409		0.21486	[0.21-0.22] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	5E-353		0.197896	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-430		0.219129	[0.21-0.23] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	4E-508		0.239458	[0.23-0.25] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-390		0.209814	[0.2-0.22] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	9E-640		0.267634	[0.26-0.28] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	3E-368		0.203532	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-435		0.221563	[0.21-0.23] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-381		0.190407	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	5E-326		0.171679	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs35980001-G	0.78792	5E-80		0.0963925	[0.086-0.106] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787507	2E-385		0.195483	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-364		0.206879	[0.2-0.22] unit increase	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	7E-461		0.228446	[0.22-0.24] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	7E-398		0.194454	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787507	7E-379		0.186841	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787553	1E-84		0.09808	[0.088-0.108] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-370		0.20437	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-342		0.17579	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-381		0.208253	[0.2-0.22] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	6E-450		0.207091	[0.2-0.22] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-340		0.175249	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-9		0.0299277	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	2E-552		0.249121	[0.24-0.26] unit increase	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787507	6E-612		0.255152	[0.25-0.26] unit increase	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs35980001-G	0.787529	1E-427		0.198526	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q21.3	NR	rs35980001-G	0.786565	1E-43		0.0327125	[0.028-0.037] unit decrease	Affymetrix [15000001]	N
1033	chr15	58722590	58722590	rs35980001	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	15q21.3		rs35980001-GC	0.21	5E-25		0.0421	[0.034-0.05] unit increase	NR [8806780] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	15q21.3		rs35980001-GC	0.21	6E-14		0.0316	[0.023-0.04] unit increase	NR [8806780] (imputed)	N
1033	chr15	58722590	58722590	rs35980001	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	15q21.3		rs35980001-GC	0.21	10E-10		0.019	[0.013-0.025] unit decrease	NR [6098063] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	9E-35		0.058111	[0.049-0.067] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	3E-163		0.13083	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-112		0.106515	[0.097-0.116] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	5E-127		0.114416	[0.11-0.12] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780309	5E-245		0.165985	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	7E-255		0.163114	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	6E-278		0.173404	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	6E-293		0.178899	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-180		0.135782	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	8E-107		0.101625	[0.093-0.111] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-44		0.0658316	[0.057-0.075] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	5E-241		0.155281	[0.15-0.16] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	7E-96		0.0998071	[0.09-0.109] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	2E-80		0.0910667	[0.082-0.1] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	2E-134		0.119567	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	8E-27		0.0509926	[0.042-0.06] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1077835-A	0.781857	4E-200		0.151296	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-110		0.104117	[0.095-0.113] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	9E-333		0.170824	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	2E-251		0.15948	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	1E-315		0.176978	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	9E-96		0.101209	[0.092-0.111] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	5E-153		0.12603	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	9E-86		0.0961988	[0.087-0.106] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-63		0.0835269	[0.074-0.093] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-18		0.0411538	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-121		0.112559	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs1077835-A	0.781857	1E-133		0.12267	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	3E-56		0.07834	[0.069-0.088] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	5E-159		0.12734	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780289	4E-19		0.0423314	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-111		0.1029	[0.094-0.112] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-37		0.060085	[0.051-0.069] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	3E-40		0.06224	[0.053-0.071] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-128		0.116332	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-39		0.0608126	[0.052-0.07] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-45		0.0669234	[0.058-0.076] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	4E-135		0.123634	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-286		0.175244	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-57		0.073565	[0.065-0.083] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	1E-34		0.0597262	[0.05-0.069] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	15q21.3		rs1077835-A	0.780287	3E-152		0.119951	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholines	4,348 individuals	NA	15q21.3		rs1077835-G	0.212058508	4E-9		0.15675	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q21.3		rs1077835-G	NR	5E-15		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q21.3		rs1077835-G	NR	2E-16		0.0151	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q21.3		rs1077835-G	NR	2E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-A	NR	2E-34		0.1341	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-A	NR	2E-34		0.111	[0.093-0.129] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-T	NR	2E-34		0.1252	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-A	NR	2E-34		0.136	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-G	NR	2E-34		0.093	[0.078-0.108] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-T	NR	2E-34		0.1361	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-A	NR	2E-34		0.1387	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-C	NR	2E-34		0.136	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077835-G	NR	2E-34		0.092	[0.077-0.107] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	15q21.3		rs1077835-?	NR	9E-25		0.08	[0.064-0.096] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q21.3	LIPC	rs1077835-A	0.779538	3E-86		0.0473972	[0.043-0.052] unit decrease	Affymetrix [NR] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Triglyceride levels	14,126 African ancestry individuals	NA	15q21.3		rs1077835-A	0.434	1E-10		0.0759975	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	High density lipoprotein cholesterol levels	2,045 European ancestry individuals	NA	15q21.3	NR	rs1077835-G	NR	8E-6		0.156	[0.088-0.224] unit increase	Illumina [~ 9300000] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	15q21.3	NR	rs1077835-?	NR	3E-9		0.02446351	[0.016-0.033] unit increase	Illumina [31978265] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs1077835-?	NR	5E-25		1.181832	[0.96-1.41] unit increase	Illumina [31978362] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q21.3	LIPC	rs1077835-A	0.6836	3E-12		0.021	[0.015-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	NR	6E-28		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.784	3E-21	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	NR	1E-37		0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.784	1E-31	(EA)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.588	1E-6	(East Asian)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	NR	1E-121		0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.784	8E-101	(EA)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.6	1E-9	(Hispanic)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077835-A	0.588	1E-17	(East Asian)	0.116	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	15q21.3	LIPC	rs1077835-G	0.22	2E-14		0.059	[0.043-0.075] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1033	chr15	58723425	58723426	rs1077835	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	15q21.3	LIPC	rs1077835-A	0.38	2E-14		0.17	[0.13-0.21] unit decrease	Illumina [1361436] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781737	4E-57		0.0771698	[0.068-0.087] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	3E-52		0.0717539	[0.063-0.081] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	2E-14		0.0364797	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	3E-40		0.0638888	[0.054-0.073] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	1E-33		0.0583776	[0.049-0.068] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	7E-12		0.0331193	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	7E-17		0.040217	[0.031-0.05] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781357	4E-9		0.0272579	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	3E-147		0.123912	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	4E-8		0.0260876	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781737	2E-107		0.106696	[0.097-0.116] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	2E-72		0.0856182	[0.076-0.095] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781737	1E-20		0.0445994	[0.035-0.054] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	4E-22		0.0453168	[0.036-0.054] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	5E-19		0.0443478	[0.035-0.054] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781376	2E-187		0.139624	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781737	5E-35		0.0590869	[0.05-0.068] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	3E-33		0.0564167	[0.047-0.066] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs1077834-T	0.781354	9E-169		0.129064	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of LDL particles	4,348 individuals	NA	15q21.3		rs1077834-C	0.210896044	5E-11		0.174207	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q21.3		rs1077834-C	NR	2E-15		0.0172	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	15q21.3		rs1077834-T	NR	3E-42		0.22	unit decrease	Illumina [NR] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-C	NR	1E-34		0.1389	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-C	NR	1E-34		0.1361	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-C	NR	1E-34		0.1258	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-A	NR	9E-35		0.0799	[0.067-0.093] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-T	NR	1E-34		0.096	[0.081-0.111] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-C	NR	1E-34		0.1365	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-G	NR	1E-34		0.089	[0.075-0.103] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-C	NR	1E-34		0.1259	[0.11-0.15] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs1077834-A	NR	1E-34		0.1378	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	15q21.3	LIPC	rs1077834-?	NR	4E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [21347608] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	15q21.3	LIPC	rs1077834-?	NR	2E-11		0.0035	[0.0025-0.0045] unit decrease	Affymetrix [21347608] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q21.3	AQP9, LIPC	rs1077834-T	0.78	2E-10		6.4	z-score increase	Affymetrix [4312306] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs1077834-T	0.54674	7E-29	(1-stearoyl-GPE (18:0))	0.261	[0.22-0.31] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs1077834-T	0.54674	3E-18	(1-arachidonoyl-GPE (20:4n6)*)	0.206	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs1077834-T	0.54674	2E-30	(1-palmitoyl-GPE (16:0))	0.27	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs1077834-T	0.54674	2E-16	(2-stearoyl-GPE (18:0)*)	0.194	[0.15-0.24] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs1077834-T	0.54674	2E-15	(1-oleoyl-GPE (18:1))	0.181	[0.14-0.23] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,231 Japanese ancestry men	2,599 Japanese ancestry men	15q21.3	LIPC	rs1077834-T	0.4916	1E-16		0.0378	[0.029-0.047] unit decrease	Illumina [7094228] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	15q21.3	NR	rs1077834-?	NR	3E-9		0.02441977	[0.016-0.032] unit increase	Illumina [31978265] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs1077834-?	NR	6E-25		1.181073	[0.96-1.41] unit increase	Illumina [31978362] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	NR	7E-28		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.784	3E-21	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	NR	8E-38		0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.784	7E-32	(EA)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.588	1E-6	(East Asian)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	NR	8E-122		0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.784	6E-101	(EA)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.599	1E-9	(Hispanic)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1077834-T	0.588	1E-17	(East Asian)	0.116	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	15q21.3	LIPC	rs1077834-T	0.789	3E-56	(Trans-ethnic initial)	0.0652	[0.057-0.074] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	15q21.3	LIPC	rs1077834-T	0.586	2E-39	(Asian initial, BMI unadjusted)	0.133	[0.11-0.15] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	15q21.3	LIPC	rs1077834-T	NR	3E-87				NR [2501543] (imputed)	N
1033	chr15	58723478	58723479	rs1077834	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	15q21.3	LIPC	rs1077834-T	0.49	1E-14	(HDL)	0.14	[0.1-0.18] unit decrease	Illumina [561583]	N
1033	chr15	58723586	58723587	rs35588604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs35588604-G	0.991989	4E-9		0.123747	[0.082-0.165] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs1800588-C	0.78448	1E-8		0.0284442	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs1800588-C	0.784481	2E-44		0.0677672	[0.058-0.077] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs1800588-C	0.78448	1E-34		0.0617255	[0.052-0.072] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	15q21.3		rs1800588-T	0.20971184	7E-12		0.185109	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.210628853	6E-30		0.308261	[0.26-0.36] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.20971184	1E-11		0.182569	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.210628853	4E-8		0.149951	[0.097-0.203] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.21	8E-8		0.15	[0.091-0.209] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL3	4,348 individuals	NA	15q21.3		rs1800588-T	0.208652254	1E-10		0.170354	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.20971184	7E-10		0.166709	[0.11-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	15q21.3		rs1800588-T	0.208652254	6E-9		0.153889	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large HDL particle concentration	4,348 individuals	NA	15q21.3		rs1800588-T	0.210628853	2E-8		0.152434	[0.099-0.206] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large HDL	4,348 individuals	NA	15q21.3		rs1800588-T	0.21	6E-8		0.15	[0.091-0.209] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large HDL	4,734 individuals	NA	15q21.3		rs1800588-T	0.208285241	1E-30		0.297561	[0.25-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL3	4,734 individuals	NA	15q21.3		rs1800588-T	0.207945278	2E-9		0.151433	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	15q21.3		rs1800588-T	0.506968	4E-58		0.0643739	[0.057-0.072] unit increase	Illumina [13471903] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	15q21.3		rs1800588-T	NR	2E-164		0.0603	[0.056-0.065] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	15q21.3		rs1800588-T	0.507242	3E-60		0.0583891	[0.051-0.065] unit increase	Illumina [13476599] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	15q21.3		rs1800588-T	NR	2E-14		0.0419	[0.031-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-12		0.0801241	[0.058-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	6E-117		0.323666	[0.3-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-31		0.141581	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-20		0.094019	[0.074-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	9E-106		0.303508	[0.28-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-27		0.136408	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-14		0.0840143	[0.063-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	4E-59		0.225489	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	4E-17		0.104591	[0.08-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	3E-48		0.258248	[0.22-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	3E-108		0.32656	[0.3-0.36] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	3E-118		0.323879	[0.3-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	5E-17		0.102472	[0.079-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	2E-136		0.357122	[0.33-0.39] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	8E-81		0.279816	[0.25-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	5E-22		0.12588	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	1E-22		0.118729	[0.095-0.143] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs1800588-T	NR	2E-10		0.0642567	[0.045-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	15q21.3		rs1800588-T	0.212	2E-10		0.066	[0.046-0.086] unit increase	Affymetrix [812428]	N
1033	chr15	58723674	58723675	rs1800588	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.3	LIPC	rs1800588-?		8E-55		0.061	[0.053-0.069] unit decrease	Illumina [31500000] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.3	LIPC	rs1800588-?		1E-69		0.0643	[0.057-0.071] unit decrease	Illumina [31500000] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.3	LIPC	rs1800588-?		3E-191		0.136	[0.13-0.15] unit decrease	Illumina [31500000] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	15q21.3	LIPC	rs1800588-?		3E-6	(African American)	0.11128225	[0.065-0.158] unit increase	Illumina [13620258] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q21.3		rs1800588-?	NR	5E-35		0.0305021	[0.026-0.035] unit decrease	NR [6912294] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	15q21.3		rs1800588-C	0.784797	2E-43		0.033	[0.029-0.037] unit decrease	NR [7250403] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q21.3	LIPC	rs1800588-C	0.78369	2E-566		0.117819	[0.11-0.12] unit decrease	Affymetrix [NR] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	15q21.3	NR	rs1800588-T	0.21461	3E-36		0.029769	[0.025-0.034] unit decrease	Affymetrix [16668957] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q21.3	ALDH1A2	rs1800588-?	NR	3E-83		0.02085	[0.019-0.023] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs1800588-?	NR	6E-88		0.02121	[0.019-0.023] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,431 Japanese ancestry women	3,109 Japanese ancestry women	15q21.3	LIPC	rs1800588-C	0.4911	4E-17		0.0345	[0.026-0.043] unit decrease	Illumina [7094228] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	6E-10	(M_HDL_L)	0.062493663	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	3E-62	(L_LDL_TG)	0.20687245	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	3E-31	(HDL_D)	0.100022376	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	1E-87	(IDL_TG)	0.2095952	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	1E-15	(SM)	0.05573824	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	3E-41	(L_LDL_TG)	0.1969422	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	3E-16	(HDL_D)	0.10074445	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	2E-6	(SM)	0.057104833	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs1800588-?	NR	2E-46	(IDL_TG)	0.21018669	NR unit increase	Illumina [609262]	N
1033	chr15	58723674	58723675	rs1800588	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	15q21.3	NR	rs1800588-?	NR	3E-9		0.02445304	[0.016-0.033] unit increase	Illumina [31978265] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs1800588-?	NR	3E-24		1.167046	[0.94-1.39] unit increase	Illumina [31978362] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	15q21.3	ALDH1A2	rs1800588-T	0.216347	4E-8		0.037284393	[0.024-0.051] unit increase	Affymetrix [7288503] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	NR	3E-27		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.787	1E-20	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	NR	3E-36		0.061	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.787	1E-30	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.596	5E-6	(East Asian)	0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	NR	8E-121		0.093	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.787	2E-100	(EA)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.603	3E-9	(Hispanic)	0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs1800588-C	0.596	2E-17	(East Asian)	0.115	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	15q21.3	LIPC	rs1800588-?	NR	6E-51		0.06402	[0.056-0.072] unit increase novel	Illumina [6108953] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	15q21.3	LIPC	rs1800588-?	NR	4E-53		0.05965	[0.052-0.067] unit increase novel	Illumina [6108953] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	15q21.3	LIPC	rs1800588-T	0.4	6E-13	(Asian initial, BMI unadjusted)	0.084	[0.06-0.108] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	15q21.3	LIPC	rs1800588-T	0.41	3E-6	(BMI unadjusted)	0.078	[0.045-0.111] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	15q21.3	LIPC	rs1800588-T	0.38	3E-14		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	15q21.3	LIPC	rs1800588-T	0.38	2E-34		1.462	[1.23-1.69] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	15q21.3	LIPC	rs1800588-T	0.38	8E-16		2.719	[2.07-3.37] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1033	chr15	58723674	58723675	rs1800588	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	15q21.3	LIPC	rs1800588-T	0.21	2E-32		0.14	[0.12-0.16] unit increase	Affymetrix [389878]	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	1E-11		0.297933	[0.21-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	7E-12		0.298461	[0.21-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	3E-10		0.29122	[0.2-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	4E-13		0.317545	[0.23-0.4] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	2E-13		0.329589	[0.24-0.42] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35511894-T	NR	2E-10		0.292328	[0.2-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs35511894-T	NR	1E-15		0.0721	[0.054-0.09] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs35511894-T	NR	4E-37		0.1195	[0.1-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58723708	58723709	rs35511894	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs35511894-T	NR	1E-46		0.1352	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs2070895-G	0.782885	1E-142		0.128432	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-211		0.138929	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781324	3E-132		0.114172	[0.11-0.12] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-64		0.0825184	[0.073-0.092] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	3E-189		0.141231	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	7E-72		0.0864363	[0.077-0.096] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-209		0.154679	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	1E-178		0.137258	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	4E-212		0.139972	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-128		0.10761	[0.099-0.116] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	1E-266		0.154212	[0.15-0.16] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-257		0.158972	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-286		0.168185	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	4E-20		0.0457734	[0.036-0.056] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	3E-159		0.122025	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	1E-301		0.163884	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	5E-65		0.0851679	[0.075-0.095] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781301	6E-224		0.158578	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	1E-272		0.171277	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	8E-275		0.170405	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-285		0.161445	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-172		0.140163	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	6E-236		0.144576	[0.14-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	1E-89		0.0900905	[0.081-0.099] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	5E-94		0.10304	[0.093-0.113] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-266		0.170924	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781343	7E-179		0.139104	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	2E-76		0.0896333	[0.08-0.099] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs2070895-G	0.782885	3E-102		0.107834	[0.098-0.118] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	8E-310		0.181887	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	4E-291		0.164163	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	7E-70		0.0882114	[0.078-0.098] unit increase	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs2070895-G	0.781321	4E-262		0.152005	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phosphatidylcholine and other cholines	4,348 individuals	NA	15q21.3		rs2070895-A	0.210523643	5E-8		0.150509	[0.097-0.204] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q21.3		rs2070895-A	NR	7E-115		0.0524	[0.048-0.057] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	15q21.3		rs2070895-A	0.515848	1E-158		0.12626	[0.12-0.14] unit increase	Illumina [13465896] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q21.3		rs2070895-A	NR	2E-578		0.1221	[0.12-0.13] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-T	NR	1E-13		0.0582	[0.043-0.074] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-G	NR	1E-13		0.0425	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-G	NR	1E-13		0.0648	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-C	NR	1E-13		0.0387	[0.029-0.049] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-T	NR	1E-13		0.0578	[0.043-0.073] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-A	NR	1E-13		0.0511	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-A	NR	1E-13		0.1297	[0.095-0.164] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-G	NR	1E-13		0.048	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2070895-T	NR	1E-13		0.0613	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q21.3	AQP9, LIPC	rs2070895-G	0.78	1E-11		6.8	z-score increase	Affymetrix [4314223] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	7E-45	(1-stearoyl-2-arachidonoyl-GPE (18:0/20:4))	0.331	[0.28-0.38] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	5E-53	(1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4)*)	0.361	[0.31-0.41] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	3E-23	(1-stearoyl-2-oleoyl-GPE (18:0/18:1))	0.227	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	2E-36	(1-palmitoyl-2-linoleoyl-GPE (16:0/18:2))	0.281	[0.24-0.32] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	1E-30	(1-stearoyl-2-linoleoyl-GPE (18:0/18:2)*)	0.257	[0.21-0.3] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q21.3	LIPC	rs2070895-G	0.548484	1E-28	(1-palmitoyl-2-oleoyl-GPE (16:0/18:1))	0.256	[0.21-0.3] unit decrease	Illumina [13039987] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q21.3	LIPC, ALDH1A2	rs2070895-A	0.219466	1E-12		0.018966176	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q21.3	LIPC, ALDH1A2	rs2070895-A	0.21948	2E-19		0.024064349	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q21.3	LIPC, ALDH1A2	rs2070895-A	0.219471	7E-16		0.021548543	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.286443	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.219081	2E-15		0.017769	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.284585	5E-23				Affymetrix, Illumina [24653286] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.218914	7E-25		0.022901	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.283816	2E-16				Affymetrix, Illumina [24558453] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q21.3	NR	rs2070895-A	0.218945	1E-18		0.019615	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q21.3	ALDH1A2	rs2070895-?	NR	5E-45		0.0447	[0.039-0.05] unit increase	Affymetrix [5701386] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	HDL cholesterol levels	14,126 African ancestry individuals	NA	15q21.3		rs2070895-G	0.439	2E-12		0.0656326	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	15q21.3	NR	rs2070895-?	NR	8E-10		0.061	[0.041-0.081] unit increase	Illumina [1770809] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	15q21.3	LIPC	rs2070895-A	0.43	4E-24		0.0374	[0.03-0.045] unit increase	Affymetrix [at least 805769] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q21.3		rs2070895-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	15q21.3	LIPC	rs2070895-G	0.77	8E-10		0.1424	[0.097-0.188] unit decrease	Illumina [at least 9000000] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	15q21.3	LIPC	rs2070895-?	NR	1E-140		0.1322	[0.12-0.14] unit increase novel	Illumina [6108953] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	15q21.3	LIPC	rs2070895-A	0.41	5E-13	(Asian initial, BMI unadjusted)	0.077	[0.055-0.099] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	15q21.3	LIPC	rs2070895-?	NR	2E-11	(EA)	1.1494253		Illumina [12023830] (imputed)	N
1033	chr15	58723938	58723939	rs2070895	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q21.3	LIPC	rs2070895-A	0.21	1E-18	(1-palmitoylglycerophosphoethanolamine)	0.03	[0.024-0.036] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1033	chr15	58724370	58724371	rs8192701	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8192701-C	NR	6E-10		0.0797	[0.054-0.105] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs11631342-A	0.991948	2E-8		0.120475	[0.079-0.162] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs11631342-A	0.99195	2E-9		0.130767	[0.088-0.173] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs11631342-A	0.991948	4E-9		0.124981	[0.083-0.167] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs11631342-A	0.991948	4E-8		0.113643	[0.073-0.154] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs11631342-A	0.991948	5E-9		0.12471	[0.083-0.166] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs11631342-A	0.99195	3E-10		0.141773	[0.098-0.186] unit increase	NR [11722792] (imputed)	N
1033	chr15	58724382	58724383	rs11631342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs11631342-A	0.991948	6E-10		0.129419	[0.088-0.17] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58724523	58724524	rs6494005	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs6494005-A	NR	1E-10		0.0332	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724523	58724524	rs6494005	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs6494005-T	NR	1E-10		0.0528	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724523	58724524	rs6494005	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs6494005-A	NR	1E-10		0.0366	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724523	58724524	rs6494005	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs6494005-C	NR	1E-10		0.062	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724523	58724524	rs6494005	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	15q21.3	LIPC	rs6494005-A	0.75	3E-9	(BMI unadjusted)	0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	2E-29		0.25659	[0.21-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	1E-26		0.240231	[0.2-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	3E-15		0.1773	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	2E-13		0.210665	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	9E-29		0.265966	[0.22-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	3E-27		0.245145	[0.2-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	6E-36		0.291312	[0.25-0.34] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11632618-A	NR	4E-20		0.218728	[0.17-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.3	NR	rs11632618-A	NR	1E-14		0.0365	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs11632618-A	NR	1E-39		0.0623	[0.053-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs11632618-A	NR	1E-107		0.1089	[0.099-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs11632618-A	NR	8E-135		0.1225	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58724705	58724706	rs11632618	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.3	LIPC	rs11632618-G	0.930377	2E-173		0.10804	[0.1-0.12] unit decrease	Affymetrix [NR] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-G	NR	5E-10		0.0772	[0.053-0.102] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-A	NR	5E-10		0.0756	[0.052-0.1] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-C	NR	5E-10		0.0778	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-T	NR	5E-10		0.0363	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-A	NR	5E-10		0.0632	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-C	NR	5E-10		0.0363	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-G	NR	5E-10		0.0686	[0.047-0.09] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8034802-T	NR	5E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs8034802-?	NR	3E-13		0.8392919	[0.61-1.06] unit increase	Illumina [31978362] (imputed)	N
1033	chr15	58724791	58724792	rs8034802	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	15q21.3	LIPC	rs8034802-A	0.362	1E-9		0.104	[0.071-0.137] unit increase	Affymetrix [~ 2740000] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large HDL	4,348 individuals	NA	15q21.3		rs8033940-A	0.283130938	1E-10		0.15739	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	15q21.3		rs8033940-A	0.283130938	8E-11		0.158201	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large HDL	4,348 individuals	NA	15q21.3		rs8033940-A	0.283130938	1E-10		0.155861	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	4E-12		0.161348	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	5E-12		0.160205	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281384224	3E-8		0.129454	[0.084-0.175] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	7E-12		0.159544	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.28	1E-7		0.12	[0.081-0.159] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	1E-9		0.141835	[0.096-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	15q21.3		rs8033940-A	0.280516265	4E-10		0.142843	[0.098-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	15q21.3		rs8033940-A	0.281384224	2E-8		0.131234	[0.085-0.177] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	1E-11		0.157889	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.281375219	1E-11		0.158102	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	15q21.3		rs8033940-A	0.28	1E-7		0.12	[0.081-0.159] mmol/l increase	Illumina [7701709] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-C	NR	5E-10		0.0737	[0.05-0.097] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-G	NR	5E-10		0.0639	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-C	NR	5E-10		0.0309	[0.021-0.041] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-C	NR	5E-10		0.1028	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-C	NR	5E-10		0.0325	[0.022-0.043] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-A	NR	5E-10		0.0767	[0.053-0.101] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-G	NR	5E-10		0.0711	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-G	NR	5E-10		0.0506	[0.035-0.066] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58724841	58724842	rs8033940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs8033940-G	NR	5E-10		0.0711	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-C	NR	1E-10		0.0608	[0.042-0.079] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-C	NR	1E-10		0.0698	[0.049-0.091] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-T	NR	1E-10		0.0312	[0.022-0.041] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-G	NR	1E-10		0.0659	[0.046-0.086] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-G	NR	1E-10		0.1051	[0.073-0.137] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-T	NR	1E-10		0.0766	[0.053-0.1] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs633695-A	NR	1E-10		0.0733	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58725838	58725839	rs633695	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs633695-?	NR	2E-30	(FreeC)	0.062875934	NR unit increase	Illumina [609262]	N
1033	chr15	58725985	58725986	rs17269250	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs17269250-G	NR	6E-12		0.319791	[0.23-0.41] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58725985	58725986	rs17269250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs17269250-G	NR	1E-12		0.0678	[0.049-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58725985	58725986	rs17269250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs17269250-G	NR	2E-23		0.0996	[0.08-0.119] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58725985	58725986	rs17269250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs17269250-G	NR	1E-29		0.1132	[0.094-0.133] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58726462	58726463	rs17190510	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs17190510-G	NR	4E-22		0.0831	[0.066-0.1] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	3E-89		0.0993012	[0.09-0.109] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	3E-109		0.108309	[0.099-0.118] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	1E-23		0.0502571	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261334-G	0.21175	8E-100		0.105407	[0.096-0.115] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	4E-52		0.076147	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261334-G	0.21175	3E-17		0.0420259	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs261334-G	0.21173	1E-166		0.134568	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	3E-31		0.0585774	[0.049-0.068] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	3E-27		0.0543844	[0.045-0.064] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	1E-78		0.0938911	[0.084-0.104] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	1E-42		0.068322	[0.059-0.078] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	4E-64		0.0849846	[0.075-0.095] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	4E-53		0.0774014	[0.068-0.087] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	9E-44		0.067626	[0.058-0.077] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	1E-51		0.0761553	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	1E-49		0.0721808	[0.063-0.082] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	15q21.3		rs261334-G	0.211753	2E-27		0.0547489	[0.045-0.065] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	15q21.3		rs261334-C	0.795333563	7E-26		0.279697	[0.23-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	15q21.3		rs261334-C	0.795380635	1E-26		0.283887	[0.23-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	15q21.3		rs261334-C	0.795380635	9E-24		0.267312	[0.22-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total phosphoglycerides	4,348 individuals	NA	15q21.3		rs261334-C	0.794853078	1E-8		0.154015	[0.1-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	15q21.3		rs261334-C	0.795568182	3E-20		0.240357	[0.19-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium LDL	4,734 individuals	NA	15q21.3		rs261334-C	0.795923695	1E-24		0.261436	[0.21-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	15q21.3		rs261334-C	0.795841783	1E-25		0.26771	[0.22-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	15q21.3		rs261334-C	0.796049905	2E-22		0.249064	[0.2-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	15q21.3		rs261334-C	0.795841783	2E-23		0.25481	[0.21-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in HDL	4,734 individuals	NA	15q21.3		rs261334-C	0.795841783	4E-18		0.222061	[0.17-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	4E-13		0.0822231	[0.06-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	4E-114		0.321878	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	7E-31		0.140628	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	3E-21		0.0960315	[0.076-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	3E-103		0.302031	[0.27-0.33] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	9E-28		0.137766	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_35:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	2E-15		0.0869105	[0.065-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	7E-58		0.224657	[0.2-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	1E-16		0.103767	[0.079-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	4E-48		0.260168	[0.23-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:5_[M+H]1+/Phosphatidylethanolamine_40:5_[M+H]1+/Phosphatidate_42:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	2E-10		0.112825	[0.078-0.148] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	6E-105		0.323851	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	1E-115		0.322536	[0.29-0.35] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:3_[M+H]1+/Phosphatidylethanolamine_38:3_[M+H]1+/Phosphatidate_40:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	2E-17		0.104728	[0.081-0.129] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	2E-132		0.354425	[0.33-0.38] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	3E-77		0.27543	[0.25-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	2E-20		0.121771	[0.096-0.147] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	1E-21		0.11684	[0.093-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261334-G	NR	4E-10		0.0631266	[0.043-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58726743	58726744	rs261334	33499410	Liao YH	2021-01-22	Genes (Basel)	Functional Haplotype of <i>LIPC</i> Induces Triglyceride-Mediated Suppression of HDL-C Levels According to Genome-Wide Association Studies.	High density lipoprotein cholesterol levels	4,000 East Asian ancestry individuals	NA	15q21.3	LIPC	rs261334-G	NR	1E-10		0.01471	NR unit increase	Affymetrix [614821]	N
1033	chr15	58726743	58726744	rs261334	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	15q21.3		rs261334-C	0.78	8E-9		0.0573	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1033	chr15	58726743	58726744	rs261334	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q21.3	LIPC	rs261334-G	0.212726	9E-18		0.0218856	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
1033	chr15	58726743	58726744	rs261334	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	15q21.3	LIPC	rs261334-?	NR	6E-21		0.01895	[0.015-0.023] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1033	chr15	58726743	58726744	rs261334	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	15q21.3	NR	rs261334-?	NR	6E-18		1.014769	[0.78-1.25] unit decrease	Illumina [31978362] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	NR	6E-28		0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.358	8E-6	(East Asian)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.209	5E-21	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	NR	5E-36		0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.209	6E-30	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	NR	3E-118		0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.369	2E-10	(Hispanic)	0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.358	2E-13	(East Asian)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261334-G	0.209	6E-97	(EA)	0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58726743	58726744	rs261334	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	15q21.3	NR	rs261334-?	NR	1E-125	(Triglycerides in very large HDL, conditioned)	0.2686627	[0.25-0.29] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1033	chr15	58726743	58726744	rs261334	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	15q21.3	LIPC	rs261334-G	0.384	9E-13	(Hispanic)	0.094	[0.069-0.119] unit increase	Affymetrix [at least 370268] (imputed)	N
1033	chr15	58726743	58726744	rs261334	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	HDL cholesterol	3,681 individuals	NA	15q21.3	LIPC	rs261334-G	0.213	6E-7		0.031	[0.019-0.043] unit increase	Illumina [101597]	N
1033	chr15	58726743	58726744	rs261334	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	15q21.3	LIPC	rs261334-G	0.20	5E-22		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	2E-28		0.055368	[0.046-0.065] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	3E-74		0.0900073	[0.08-0.1] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	5E-58		0.0783273	[0.069-0.088] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	4E-63		0.0820444	[0.072-0.092] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	2E-8		0.02834	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	2E-65		0.083626	[0.074-0.093] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs139566989-C	0.210406	4E-71		0.091081	[0.081-0.101] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	2E-21		0.0477292	[0.038-0.058] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs139566989-C	0.211874	2E-19		0.0449588	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q21.3		rs139566989-CGCTGCTCCAAAGAGCAGCT	NR	1E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1033	chr15	58726968	58726968	rs139566989	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	15q21.3	NR	rs139566989-?		8E-6		1.98	[1.46-2.67]	Illumina [539473] (imputed)	N
1033	chr15	58727278	58727279	rs261333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261333-C	NR	7E-13		0.1866	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727278	58727279	rs261333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261333-A	NR	7E-13		0.076	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727278	58727279	rs261333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261333-C	NR	7E-13		0.1875	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261332-A	0.209008	2E-13		0.0366397	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
1033	chr15	58727324	58727325	rs261332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261332-A	0.209008	2E-16		0.0414943	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1033	chr15	58727324	58727325	rs261332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261332-A	0.209008	1E-16		0.042031	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	15q21.3		rs261332-G	0.797935358	7E-12		0.184467	[0.13-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	15q21.3		rs261332-G	0.798003912	2E-22		0.260961	[0.21-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	15q21.3		rs261332-G	0.79840448	5E-8		0.140891	[0.09-0.191] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	15q21.3		rs261332-G	0.798485938	1E-13		0.191671	[0.14-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-T	NR	7E-13		0.0851	[0.062-0.108] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-G	NR	7E-13		0.0802	[0.058-0.102] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-T	NR	7E-13		0.0493	[0.036-0.063] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-G	NR	7E-13		0.1872	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-C	NR	7E-13		0.0491	[0.036-0.062] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-G	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-G	NR	7E-13		0.0574	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-C	NR	7E-13		0.1874	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261332-A	NR	7E-13		0.1867	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58727324	58727325	rs261332	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	15q21.3		rs261332-A	0.2	2E-10		2.39	[1.65-3.13] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1033	chr15	58727324	58727325	rs261332	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	15q21.3		rs261332-A	0.2	3E-25		1.58	[1.29-1.87] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1033	chr15	58727324	58727325	rs261332	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	15q21.3	LIPC, LIPC-AS1	rs261332-T	0.1955	5E-8		0.96994877	[0.62-1.32] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1033	chr15	58727324	58727325	rs261332	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	15q21.3	LIPC, LIPC-AS1	rs261332-T	0.1955	9E-21		2.5879784	[2.05-3.13] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1033	chr15	58727324	58727325	rs261332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	15q21.3	RP11-355N15.1	rs261332-G	0.792	7E-9		0.02541862	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1033	chr15	58727324	58727325	rs261332	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	15q21.3	NR	rs261332-?	NR	2E-35				Affymetrix [NR]	N
1033	chr15	58727324	58727325	rs261332	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	15q21.3	NR	rs261332-?	NR	4E-42				Affymetrix [NR]	N
1033	chr15	58727686	58727687	rs62000939	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs62000939-T	NR	9E-11		0.0857	[0.06-0.112] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58728473	58728474	rs72740878	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs72740878-G	0.967905	2E-10		0.0700617	[0.048-0.092] unit increase	NR [11722792] (imputed)	N
1033	chr15	58730497	58730498	rs588136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs588136-C	0.212275	3E-118		0.116394	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58730497	58730498	rs588136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs588136-C	0.212275	7E-56		0.0780831	[0.068-0.088] unit increase	NR [11722792] (imputed)	N
1033	chr15	58730497	58730498	rs588136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	15q21.3		rs588136-C	0.21231	4E-11		0.0331961	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total phosphoglycerides	4,734 individuals	NA	15q21.3		rs588136-T	0.794162963	1E-8		0.147036	[0.096-0.198] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of LDL particles	4,734 individuals	NA	15q21.3		rs588136-T	0.794244825	1E-9		0.157277	[0.11-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:7)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-T	NR	4E-11		0.084	[0.059-0.109] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-G	NR	4E-11		0.0377	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-G	NR	4E-11		0.0812	[0.057-0.105] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-A	NR	4E-11		0.04	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-C	NR	4E-11		0.0448	[0.031-0.058] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-A	NR	4E-11		0.0624	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-G	NR	4E-11		0.0423	[0.03-0.055] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs588136-T	NR	4E-11		0.0674	[0.047-0.087] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	3E-10	(M_LDL_L)	0.05016212	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-55	(M_LDL_TG)	0.18485378	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-20	(IDL_FC)	0.07748729	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-13	(L_LDL_L)	0.06171079	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	1E-63	(LDL_TG)	0.19771537	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	1E-48	(L_HDL_PL)	0.10144133	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	1E-38	(L_HDL_C)	0.098011315	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	1E-17	(L_LDL_FC)	0.067786194	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	9E-30	(M_LDL_TG)	0.1656229	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	5E-35	(LDL_TG)	0.18073395	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-8	(IDL_FC)	0.08324751	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-19	(L_HDL_PL)	0.112084754	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs588136-?	NR	2E-13	(L_HDL_C)	0.10789438	NR unit increase	Illumina [609262]	N
1033	chr15	58730497	58730498	rs588136	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	15q21.3	LIPC	rs588136-T	0.794	2E-27	(Trans-ethnic initial)	0.0495	[0.041-0.058] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1033	chr15	58730497	58730498	rs588136	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q21.3	LIPC	rs588136-T	0.8	8E-12	(1-stearoylglycerophosphoethanolamine)	0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1033	chr15	58730497	58730498	rs588136	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	15q21.3	LIPC	rs588136-?	0.69	2E-12	(HDL-C)	0.05	[0.030-0.070] unit decrease	Affymetrix [~ 3700000] (imputed)	N
1033	chr15	58730638	58730639	rs17301739	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		15q21.3	LIPC	rs17301739-?	0.07	2E-6		0.28	unit decrease	Illumina [NR] (imputed)	N
1033	chr15	58731056	58731057	rs76472879	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	15q21.3		rs76472879-A	0.017664	3E-7		2.0644097	NR	Affymetrix [7846216] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	1E-38		0.0648729	[0.055-0.075] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs261342-G	0.220046	2E-14		0.0360609	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	3E-63		0.0790933	[0.07-0.088] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-55		0.0757978	[0.066-0.085] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	1E-113		0.109913	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	7E-66		0.082849	[0.073-0.092] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-19		0.043667	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-58		0.0795928	[0.07-0.089] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	7E-9		0.0283733	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-11		0.0335743	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261342-G	0.220016	3E-104		0.107077	[0.097-0.117] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261342-G	0.220016	3E-9		0.0286502	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs261342-G	0.220016	2E-45		0.0679639	[0.059-0.077] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	6E-41		0.0667934	[0.057-0.077] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	7E-15		0.038914	[0.029-0.049] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-27		0.0534911	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs261342-G	0.220016	6E-59		0.079852	[0.07-0.09] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-37		0.0610457	[0.052-0.07] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-28		0.0526085	[0.043-0.062] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	1E-15		0.0399205	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-21		0.0470864	[0.037-0.057] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-62		0.082023	[0.072-0.092] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-18		0.0437534	[0.034-0.054] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	4E-17		0.0421446	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	2E-15		0.0379473	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	1E-8		0.0283604	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs261342-G	0.220022	3E-38		0.0615031	[0.052-0.071] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	15q21.3		rs261342-C	0.787313721	4E-15		0.214611	[0.16-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in HDL	4,348 individuals	NA	15q21.3		rs261342-C	0.788076127	8E-15		0.207693	[0.16-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-G	NR	8E-13		0.0767	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-A	NR	7E-13		0.0737	[0.054-0.094] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-G	NR	7E-13		0.0761	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-C	NR	8E-13		0.0432	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-G	NR	8E-13		0.0432	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-G	NR	7E-13		0.0794	[0.058-0.101] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-C	NR	8E-13		0.0432	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261342-A	NR	8E-13		0.1865	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731152	58731153	rs261342	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	15q21.3		rs261342-C	0.775	2E-13	(EA)	0.0235	[0.017-0.03] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1033	chr15	58731152	58731153	rs261342	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	15q21.3		rs261342-C	0.6497	5E-49		0.0179	[0.016-0.02] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	NR	7E-22		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	0.223	5E-19	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	NR	6E-30		0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	0.223	6E-29	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	NR	5E-105		0.089	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	0.601	9E-8	(East Asian)	0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	0.409	7E-10	(Hispanic)	0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q21.3	NR	rs261342-G	0.223	3E-94	(EA)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
1033	chr15	58731152	58731153	rs261342	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q21.3	ADAM10	rs261342-?	NR	5E-6	(LPE 18:0)	0.19505087	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1033	chr15	58731152	58731153	rs261342	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	15q21.3	LIPC	rs261342-C	NR	9E-13	(Glycerophospho-N-Palmitoyl Ethanolamine)			Affymetrix [333722]	N
1033	chr15	58731454	58731455	rs12900622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs12900622-C	NR	1E-11		0.111474	[0.079-0.144] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-A	NR	7E-13		0.0408	[0.03-0.052] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-C	NR	7E-13		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-A	NR	7E-13		0.1732	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-G	NR	7E-13		0.0437	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-C	NR	7E-13		0.1876	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58731566	58731567	rs261341	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261341-A	NR	7E-13		0.0425	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58732220	58732221	rs16940302	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs16940302-T	NR	8E-11		0.153563	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58732220	58732221	rs16940302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs16940302-T	NR	6E-14		0.0366	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58732220	58732221	rs16940302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs16940302-T	NR	6E-18		0.0421	[0.032-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58734396	58734397	rs59999923	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs59999923-C	NR	4E-11		0.0674	[0.047-0.087] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58734396	58734397	rs59999923	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs59999923-A	NR	4E-11		0.0392	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58734396	58734397	rs59999923	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs59999923-A	NR	4E-11		0.0598	[0.042-0.078] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735004	58735005	rs261338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261338-G	NR	7E-13		0.1872	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735004	58735005	rs261338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261338-G	NR	7E-13		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735004	58735005	rs261338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261338-A	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735004	58735005	rs261338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261338-G	NR	7E-13		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735004	58735005	rs261338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs261338-A	NR	7E-13		0.097	[0.071-0.123] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs534933-G	NR	3E-11		0.0497	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs534933-G	NR	3E-11		0.0628	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs534933-T	NR	3E-11		0.0408	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs534933-G	NR	3E-11		0.0911	[0.064-0.118] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs534933-T	NR	3E-11		0.0628	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58735221	58735222	rs534933	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q21.3	LIPC-AS1	rs534933-A	0.169039	6E-35		0.00366175	[0.0031-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
1033	chr15	58735448	58735449	rs261337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs261337-T	0.944317	5E-11		0.0578863	[0.041-0.075] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58737340	58737341	rs473224	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs473224-C	NR	1E-11		0.0622	[0.044-0.08] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58737340	58737341	rs473224	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs473224-C	NR	1E-11		0.0482	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58737340	58737341	rs473224	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs473224-A	NR	1E-11		0.0481	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58737340	58737341	rs473224	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q21.3	LIPC	rs473224-T	0.146104	7E-14		0.0223307	[0.016-0.028] unit increase	Affymetrix [NR] (imputed)	N
1033	chr15	58737340	58737341	rs473224	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs473224-?	NR	1E-17	(VLDL_D)	0.0868809	NR unit decrease	Illumina [609262]	N
1033	chr15	58737340	58737341	rs473224	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	15q21.3	LIPC	rs473224-?	NR	8E-9	(VLDL_D)	0.07185344	NR unit decrease	Illumina [609262]	N
1033	chr15	58737660	58737661	rs488490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs488490-T	NR	2E-11		0.0348	[0.025-0.045] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58737660	58737661	rs488490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs488490-G	NR	2E-11		0.0553	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58737660	58737661	rs488490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs488490-T	NR	2E-11		0.0465	[0.033-0.06] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58737660	58737661	rs488490	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs488490-A	NR	2E-11		0.0732	[0.052-0.095] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58738422	58738423	rs12914626	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q21.3	NR	rs12914626-C	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-T	NR	4E-11		0.214	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-A	NR	4E-11		0.0382	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-G	NR	4E-11		0.0625	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-T	NR	4E-11		0.0752	[0.053-0.098] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-T	NR	4E-11		0.1097	[0.077-0.142] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-G	NR	4E-11		0.057	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58740093	58740094	rs573922	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs573922-G	NR	4E-11		0.1063	[0.075-0.138] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58740587	58740588	rs8023503	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q21.3	LIPC	rs8023503-?	NR	3E-12		0.01504	[0.011-0.019] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-T	NR	2E-11		0.0398	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-C	NR	2E-11		0.1469	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-A	NR	2E-11		0.0861	[0.061-0.111] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-C	NR	2E-11		0.0477	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-G	NR	2E-11		0.0341	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-C	NR	2E-11		0.0621	[0.044-0.08] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741133	58741134	rs485671	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485671-A	NR	2E-11		0.0395	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(38:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-T	NR	2E-11		0.1469	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-A	NR	2E-11		0.0467	[0.033-0.06] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-G	NR	2E-11		0.0836	[0.059-0.108] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(34:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-T	NR	2E-11		0.0542	[0.038-0.07] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-T	NR	2E-11		0.0793	[0.056-0.102] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-G	NR	2E-11		0.1472	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58741176	58741177	rs485538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs485538-C	NR	2E-11		0.1469	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	1E-60		0.260852	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:5_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	1E-15		0.108871	[0.082-0.136] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	9E-54		0.24203	[0.21-0.27] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:3_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	5E-15		0.110771	[0.083-0.138] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	2E-29		0.177184	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	7E-26		0.210509	[0.17-0.25] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	3E-51		0.251	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	4E-61		0.260484	[0.23-0.29] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	4E-67		0.280487	[0.25-0.31] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	3E-42		0.225669	[0.19-0.26] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs261336-G	NR	7E-11		0.0960494	[0.067-0.125] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742417	58742418	rs261336	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	High density lipoprotein cholesterol levels	up to 33,431 European ancestry individuals	NA	15q21.3	LIPC, LIPC-AS1	rs261336-C	0.1795	4E-14		2.2511744	[1.67-2.83] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	1E-30		0.134192	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	7E-27		0.123522	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	7E-17		0.0960688	[0.074-0.119] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:6_[M+H]1+/Phosphatidylethanolamine_40:6_[M+H]1+/Phosphatidate_42:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	4E-13		0.106452	[0.078-0.135] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:6_[M+H]1+/Phosphatidylethanolamine_38:6_[M+H]1+/Phosphatidate_40:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	2E-19		0.109976	[0.086-0.134] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	1E-26		0.123994	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	1E-31		0.139056	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58742730	58742731	rs11858164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs11858164-T	NR	1E-21		0.116285	[0.092-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:6_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35138338-T	NR	1E-12		0.0913217	[0.066-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	15q21.3		rs35138338-T	NR	2E-13		0.0931831	[0.068-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:4_[M+H]1+/Phosphatidylethanolamine_38:4_[M+H]1+/Phosphatidate_40:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35138338-T	NR	1E-11		0.0863069	[0.061-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35138338-T	NR	4E-10		0.0815678	[0.056-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_31:2_[M+H]1+/Phosphatidylethanolamine_34:2_[M+H]1+/Phosphatidate_36:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs35138338-T	NR	2E-10		0.0846218	[0.058-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q21.3	NR	rs35138338-T	NR	3E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs35138338-T	NR	3E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs35138338-T	NR	5E-33		0.0335	[0.028-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58744480	58744481	rs35138338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs35138338-T	NR	5E-46		0.04	[0.035-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58744969	58744970	rs11071383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs11071383-C	NR	3E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58746829	58746830	rs3825776	18084291	van Es MA	2007-12-16	Nat Genet	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	15q21.3	LIPC	rs3825776-?	0.29	9E-6		1.34	[1.20-1.46]	Illumina [311946]	N
1033	chr15	58752733	58752734	rs934297	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	15q21.3	LIPC	rs934297-A	NR	5E-6	(adjusted)	0.0252	[0.0360-0.0144] unit decrease	Illumina [307238]	N
1033	chr15	58752889	58752890	rs2099190	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs2099190-A	NR	2E-13		0.0575	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
1033	chr15	58752980	58752981	rs11629736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	15q21.3		rs11629736-A	NR	8E-29		0.103	[0.085-0.121] unit decrease	Illumina [6720657] (imputed)	N
1033	chr15	58754941	58754942	rs79787170	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_33:4_[M+H]1+/Phosphatidylethanolamine_36:4_[M+H]1+/Phosphatidate_38:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	15q21.3		rs79787170-G	NR	4E-10		0.232326	[0.16-0.3] unit increase	Affymetrix [87696910] (imputed)	N
1033	chr15	58765182	58765183	rs7182229	32805626	Yuan S	2020-08-14	EBioMedicine	Effects of tumour necrosis factor on cardiovascular disease and cancer: A two-sample Mendelian randomization study.	Tumor necrosis factor levels	30,912 European ancestry individuals	NA	15q21.3	LIPC	rs7182229-T	0.11	1E-9		0.05	[0.032-0.068] unit increase	NR [NR]	N
1033	chr15	58765182	58765183	rs7182229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q21.3		rs7182229-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1033	chr15	58766285	58766286	rs79612456	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs79612456-G	NR	9E-10		0.0385	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q21.3		rs7161799-T	NR	2E-13		0.0268	[0.02-0.034] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q21.3	LIPC, RP11-355N15.1, ALDH1A2	rs7161799-T	0.074944	1E-18		0.037267335	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q21.3	LIPC, RP11-355N15.1, ALDH1A2	rs7161799-T	0.074924	4E-9		0.024871912	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q21.3	NR	rs7161799-T	0.076347	3E-12		0.024589	[0.018-0.031] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs7161799-T	0.0884954	2E-19				Affymetrix, Illumina [23472807] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q21.3	NR	rs7161799-T	0.076225	3E-21		0.034112	[0.027-0.041] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1033	chr15	58770522	58770523	rs7161799	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q21.3	NR	rs7161799-T	0.075529	9E-11		0.024607	[0.017-0.032] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1033	chr15	58772806	58772807	rs11638256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q21.3	NR	rs11638256-C	0.129433	4E-12				Affymetrix, Illumina [24649327] (imputed)	N
1033	chr15	58789529	58789530	rs55995747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs55995747-C	0.852927	6E-21		0.0517281	[0.041-0.063] unit increase	NR [11722792] (imputed)	N
1033	chr15	58789529	58789530	rs55995747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs55995747-G	NR	5E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58789529	58789530	rs55995747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs55995747-G	NR	1E-13		0.0263	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58790649	58790650	rs112694435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q21.3	NR	rs112694435-A	NR	4E-17		0.0446	[0.034-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58790649	58790650	rs112694435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs112694435-A	NR	1E-31		0.0649	[0.054-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58790649	58790650	rs112694435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs112694435-A	NR	5E-37		0.0708	[0.06-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58791415	58791416	rs59752567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q21.3		rs59752567-T	NR	7E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1033	chr15	58804662	58804663	rs12904012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs12904012-C	NR	2E-11		0.0241	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58804662	58804663	rs12904012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs12904012-C	NR	7E-11		0.0234	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr15	58824640	58824641	rs17269348	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q21.3	NR	rs17269348-?	NR	1E-8				Affymetrix [NR]	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	7E-12		0.0826871	[0.059-0.106] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs6078-G	0.971148	6E-12		0.0844178	[0.06-0.108] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	4E-11		0.0790356	[0.056-0.102] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs6078-G	0.971255	2E-9		0.075352	[0.051-0.1] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-8		0.065694	[0.043-0.089] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-12		0.0837267	[0.06-0.107] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	6E-16		0.0969351	[0.073-0.12] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-8		0.0669076	[0.043-0.091] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-15		0.0962735	[0.073-0.12] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-11		0.0818825	[0.058-0.106] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-18		0.105872	[0.082-0.129] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	5E-14		0.0907964	[0.067-0.114] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	2E-13		0.0814449	[0.06-0.103] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	5E-10		0.0672894	[0.046-0.088] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs6078-G	0.971149	7E-12		0.0775473	[0.055-0.1] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	4E-11		0.081542	[0.057-0.106] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs6078-G	0.971255	5E-8		0.0675251	[0.043-0.092] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	7E-12		0.0849378	[0.061-0.109] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	2E-15		0.0958288	[0.072-0.12] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-13		0.08224	[0.061-0.104] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-9		0.0644461	[0.043-0.086] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs6078-G	0.971149	1E-12		0.0772177	[0.056-0.099] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	5E-26		0.12304	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-8		0.0626207	[0.041-0.084] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-9		0.0701511	[0.048-0.093] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs6078-G	0.971255	3E-9		0.0728642	[0.049-0.097] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-13		0.0880168	[0.064-0.112] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-10		0.0744357	[0.052-0.097] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	8E-11		0.0701353	[0.049-0.091] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	8E-13		0.086861	[0.063-0.111] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	5E-15		0.0867687	[0.065-0.108] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-10		0.0693148	[0.048-0.09] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-12		0.0840602	[0.06-0.108] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs6078-G	0.971148	8E-10		0.0724965	[0.049-0.096] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-12		0.0853535	[0.062-0.109] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	2E-9		0.0715996	[0.048-0.095] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	5E-11		0.0727122	[0.051-0.094] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-8		0.0709855	[0.047-0.095] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	2E-8		0.0610284	[0.04-0.082] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs6078-G	0.971149	2E-15		0.0928109	[0.07-0.116] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs6078-G	0.971148	2E-9		0.072777	[0.049-0.096] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs6078-G	0.971255	3E-8		0.0687333	[0.044-0.093] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-10		0.0775383	[0.054-0.101] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-10		0.0772774	[0.054-0.101] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	4E-11		0.0736829	[0.052-0.095] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	6E-9		0.0632638	[0.042-0.085] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	1E-8		0.0660494	[0.043-0.089] unit increase	NR [11722792] (imputed)	N
1033	chr15	58833992	58833993	rs6078	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs6078-G	0.971147	3E-13		0.0796654	[0.058-0.101] unit decrease	NR [11722792] (imputed)	N
1033	chr15	58838009	58838010	rs6083	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	15q21.3	LIPC	rs6083-A	NR	5E-6		1.29	[NR]	Illumina [up to 9792010] (imputed)	N
1033	chr15	58838103	58838103	rs749932377	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q21.3		rs749932377-?	NR	2E-29		0.512297	[0.42-0.6] unit increase	NR [9800000] (imputed)	N
1033	chr15	58838103	58838103	rs749932377	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q21.3		rs749932377-?	NR	8E-30		0.543131	[0.45-0.63] unit increase	NR [9800000] (imputed)	N
1033	chr15	58838103	58838103	rs749932377	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q21.3	LIPC	rs749932377-?		1E-9		0.58	[0.42-0.74] unit increase	Illumina [31500000] (imputed)	N
1033	chr15	58840585	58840586	rs121912502	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q21.3		rs121912502-?	NR	6E-50		0.386403	[0.33-0.44] unit increase	NR [9800000] (imputed)	N
1033	chr15	58840585	58840586	rs121912502	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q21.3		rs121912502-?	NR	4E-62		0.445543	[0.39-0.5] unit increase	NR [9800000] (imputed)	N
1033	chr15	58840585	58840586	rs121912502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q21.3	NR	rs121912502-T	NR	9E-26		0.3484	[0.28-0.41] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58840585	58840586	rs121912502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs121912502-T	NR	7E-36		0.4184	[0.35-0.48] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr15	58850829	58850830	rs66642655	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs66642655-A	0.0171723	2E-10		0.0988111	[0.068-0.129] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	3E-9		0.0886286	[0.059-0.118] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	2E-12		0.105812	[0.076-0.135] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	5E-8		0.0824852	[0.053-0.112] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	1E-14		0.112547	[0.084-0.141] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	1E-9		0.0913462	[0.062-0.121] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	3E-10		0.0954012	[0.066-0.125] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	4E-11		0.0962211	[0.068-0.125] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	5E-8		0.0825191	[0.053-0.112] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	1E-8		0.0868359	[0.057-0.117] unit increase	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs117911817-G	0.9818	6E-10		0.093473	[0.064-0.123] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs117911817-G	0.981809	9E-10		0.0899592	[0.061-0.119] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58854752	58854753	rs117911817	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q21.3	NR	rs117911817-A	NR	2E-10		0.0601	[0.042-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-18		0.395385	[0.31-0.48] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-16		0.369288	[0.28-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-39		0.605579	[0.52-0.7] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-15		0.350226	[0.26-0.44] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-23		0.466875	[0.38-0.56] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-32		0.543883	[0.45-0.63] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998168	5E-10		0.300498	[0.21-0.4] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-24		0.458779	[0.37-0.55] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-42		0.621683	[0.53-0.71] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-61		0.754165	[0.66-0.84] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-9		0.275231	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-15		0.354738	[0.27-0.44] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-9		0.275353	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-31		0.533484	[0.44-0.62] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	9E-28		0.504226	[0.41-0.59] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-49		0.678011	[0.59-0.77] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-75		0.819069	[0.73-0.91] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-40		0.609073	[0.52-0.7] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-57		0.72884	[0.64-0.82] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-36		0.57485	[0.48-0.66] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-17		0.379019	[0.29-0.47] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-38		0.595568	[0.51-0.69] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-31		0.494188	[0.41-0.58] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-9		0.268329	[0.18-0.36] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-9		0.255583	[0.17-0.34] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-10		0.293077	[0.2-0.38] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-27		0.444829	[0.36-0.53] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-10		0.283498	[0.19-0.37] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	6E-18		0.3642	[0.28-0.45] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	6E-13		0.334619	[0.24-0.43] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	1E-22		0.432836	[0.35-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	3E-13		0.322038	[0.24-0.41] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	3E-12		0.323607	[0.23-0.41] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	4E-10		0.284184	[0.2-0.37] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	7E-15		0.356261	[0.27-0.45] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-12		0.314459	[0.22-0.4] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998104	8E-12		0.321948	[0.23-0.41] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998105	4E-28		0.474245	[0.39-0.56] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-16		0.370315	[0.28-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-14		0.337968	[0.25-0.43] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-9		0.280594	[0.19-0.37] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	6E-23		0.450355	[0.36-0.54] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-50		0.696708	[0.6-0.79] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998168	3E-19		0.429934	[0.34-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-15		0.370808	[0.28-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-41		0.623111	[0.53-0.71] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-32		0.502096	[0.42-0.58] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-9		0.259313	[0.17-0.35] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-27		0.442831	[0.36-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-15		0.357171	[0.27-0.45] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-17		0.364378	[0.28-0.45] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	1E-23		0.446693	[0.36-0.53] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	1E-29		0.498349	[0.41-0.58] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	1E-10		0.295413	[0.21-0.39] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	3E-16		0.368596	[0.28-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	8E-9		0.267635	[0.18-0.36] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	7E-10		0.285813	[0.2-0.38] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	6E-11		0.275192	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998104	2E-12		0.319622	[0.23-0.41] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998105	1E-28		0.462122	[0.38-0.54] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-13		0.337074	[0.25-0.43] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-64		0.750093	[0.66-0.84] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-25		0.43075	[0.35-0.51] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-11		0.30422	[0.21-0.4] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-18		0.381663	[0.3-0.47] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998168	9E-9		0.275114	[0.18-0.37] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-33		0.551625	[0.46-0.64] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-25		0.452058	[0.37-0.54] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	9E-14		0.319066	[0.24-0.4] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	6E-28		0.45158	[0.37-0.53] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-25		0.436186	[0.35-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998109	4E-17		0.37662	[0.29-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-34		0.56408	[0.47-0.65] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-38		0.546657	[0.46-0.63] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-9		0.280612	[0.19-0.37] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	6E-9		0.275008	[0.18-0.37] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-9		0.260539	[0.18-0.35] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	9E-29		0.458176	[0.38-0.54] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-10		0.297833	[0.21-0.39] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998105	1E-17		0.399798	[0.31-0.49] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-54		0.710758	[0.62-0.8] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-13		0.332584	[0.24-0.42] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-17		0.385912	[0.3-0.47] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	8E-25		0.471288	[0.38-0.56] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-21		0.427747	[0.34-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	7E-24		0.425291	[0.34-0.51] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-21		0.44867	[0.36-0.54] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-19		0.37481	[0.29-0.46] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-8		0.244967	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998105	2E-47		0.646403	[0.56-0.73] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-14		0.358596	[0.27-0.45] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-27		0.504569	[0.41-0.6] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-19		0.423848	[0.33-0.52] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-17		0.392654	[0.3-0.48] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-25		0.476142	[0.39-0.57] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-25		0.471919	[0.38-0.56] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-24		0.43315	[0.35-0.52] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	5E-10		0.293438	[0.2-0.39] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	3E-21		0.392803	[0.31-0.47] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	4E-11		0.290347	[0.2-0.38] unit increase	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	2E-36		0.524136	[0.44-0.61] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	15q21.3		rs113298164-C	0.998106	1E-13		0.319623	[0.24-0.4] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	15q21.3		rs113298164-?	NR	8E-13		0.162109	[0.12-0.21] unit increase	NR [9800000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q21.3		rs113298164-?	NR	1E-54		0.337195	[0.29-0.38] unit increase	NR [9800000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q21.3		rs113298164-?	NR	2E-59		0.371182	[0.32-0.42] unit increase	NR [9800000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs113298164-T	NR	5E-11	(PE(18:0;0-20:4;0))	0.7462	[0.52-0.97] unit increase	Illumina [~ 9300000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs113298164-T	NR	4E-8	(PE(18:0;0-18:2;0))	0.6299	[0.4-0.86] unit increase	Illumina [~ 9300000] (imputed)	N
1034	chr15	58855747	58855748	rs113298164	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs113298164-T	NR	2E-9	(Total_PE)	0.6857	[0.46-0.91] unit increase	Illumina [~ 9300000] (imputed)	N
1034	chr15	58855764	58855765	rs559266901	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q21.3		rs559266901-?	NR	3E-11		0.319547	[0.22-0.42] unit increase	NR [9800000] (imputed)	N
1034	chr15	58895719	58895720	rs118049686	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	15q21.3	ADAM10	rs118049686-A	0.06	7E-6		4.07	[2.11-7.86]	Affymetrix [583535] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	3E-9		0.0556416	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	1E-11		0.0632594	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	1E-13		0.0696034	[0.051-0.088] unit increase	NR [11722792] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	1E-10		0.0601956	[0.042-0.079] unit increase	NR [11722792] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	2E-17		0.0789832	[0.061-0.097] unit increase	NR [11722792] (imputed)	N
1034	chr15	58949990	58949991	rs4775085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs4775085-G	0.948625	2E-9		0.0564683	[0.038-0.075] unit increase	NR [11722792] (imputed)	N
1034	chr15	58969291	58969292	rs4775086	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q21.3	ADAM10	rs4775086-G	0.7637	1E-8		1.0270597		Affymetrix [11880941] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	6E-9		0.0539811	[0.036-0.072] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-18		0.0816125	[0.063-0.1] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	7E-25		0.0930218	[0.075-0.111] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	9E-15		0.0723329	[0.054-0.091] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	6E-15		0.0668138	[0.05-0.084] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	3E-11		0.0554692	[0.039-0.072] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950555	1E-13		0.0647895	[0.048-0.082] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	4E-15		0.073354	[0.055-0.092] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	2E-15		0.0680893	[0.051-0.085] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-10		0.053718	[0.037-0.07] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950546	3E-8		0.0495714	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950555	7E-13		0.0605179	[0.044-0.077] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	2E-21		0.0857825	[0.068-0.103] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	6E-9		0.0491377	[0.033-0.066] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	4E-12		0.0615125	[0.044-0.079] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-13		0.0692653	[0.051-0.088] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	4E-12		0.0580771	[0.042-0.074] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	6E-9		0.0491633	[0.033-0.066] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	2E-13		0.0689249	[0.051-0.087] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-16		0.0708837	[0.054-0.088] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	7E-12		0.0572445	[0.041-0.074] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	3E-14		0.0705814	[0.052-0.089] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-11		0.0623406	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	2E-11		0.0574287	[0.041-0.074] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	7E-9		0.048916	[0.032-0.065] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950555	3E-18		0.0788291	[0.061-0.097] unit decrease	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	2E-12		0.065122	[0.047-0.083] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	9E-12		0.0587953	[0.042-0.076] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	1E-9		0.0511372	[0.035-0.068] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	15q21.3		rs80236739-A	0.950557	3E-14		0.064222	[0.048-0.081] unit increase	NR [11722792] (imputed)	N
1034	chr15	58972698	58972699	rs80236739	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q21.3	ADAM10	rs80236739-A	0.950165	1E-12		0.0320701	[0.023-0.041] unit increase	Affymetrix [NR] (imputed)	N
1035	chr15	58985903	58985904	rs12911832	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q21.3	ADAM10	rs12911832-A	NR	8E-6	(EA)	1.0556	[1.03-1.08]	Illumina [6627481] (imputed)	N
1035	chr15	58985903	58985904	rs12911832	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q21.3	ADAM10	rs12911832-A	NR	4E-8		1.061	[1.04-1.08]	Illumina [6627481] (imputed)	N
1035	chr15	58985903	58985904	rs12911832	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q21.3	intergenic	rs12911832-A	NR	8E-8		1.059	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1035	chr15	59012132	59012133	rs4238331	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q21.3	NR	rs4238331-T	NR	5E-9		0.011	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1035	chr15	59012321	59012322	rs4775090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs4775090-G	0.950535	2E-9		0.0572773	[0.038-0.076] unit decrease	NR [11722792] (imputed)	N
1035	chr15	59012321	59012322	rs4775090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q21.3		rs4775090-G	0.950527	5E-12		0.0620831	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
1035	chr15	59012321	59012322	rs4775090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs4775090-G	0.950535	8E-9		0.053245	[0.035-0.071] unit increase	NR [11722792] (imputed)	N
1035	chr15	59012321	59012322	rs4775090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs4775090-G	0.950535	2E-8		0.0532702	[0.035-0.072] unit increase	NR [11722792] (imputed)	N
1035	chr15	59012321	59012322	rs4775090	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	15q21.3		rs4775090-G	0.950527	3E-8		0.0501013	[0.032-0.068] unit decrease	NR [11722792] (imputed)	N
1035	chr15	59022614	59022615	rs442495	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	15q21.3	ADAM10	rs442495-?	NR	3E-11		0.0675868	unit decrease	NR [10687077] (imputed)	N
1035	chr15	59022614	59022615	rs442495	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or diastolic blood pressure (pleiotropy)	1,006,863 individuals with diastolic blood pressure measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	15q21.3		rs442495-T	0.65	2E-10				NR [NR]	N
1035	chr15	59022614	59022615	rs442495	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	15q21.3	ADAM10	rs442495-C	NR	3E-7		5.147	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1035	chr15	59022614	59022615	rs442495	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	15q21.3	ADAM10	rs442495-C	0.32	1E-9		6.07	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1035	chr15	59024526	59024527	rs720273	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	15q21.3	ADAM10	rs720273-A	0.13	4E-6	(African American)	0.27	0.15-0.38 unit decrease	Illumina [NR] (imputed)	N
1035	chr15	59029865	59029866	rs79298553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q21.3		rs79298553-C	0.988784	2E-8		0.110212	[0.072-0.149] unit increase	NR [11722792] (imputed)	N
1035	chr15	59029865	59029866	rs79298553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q21.3		rs79298553-C	0.988784	2E-10		0.124004	[0.086-0.162] unit increase	NR [11722792] (imputed)	N
1035	chr15	59029865	59029866	rs79298553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	15q21.3		rs79298553-C	0.988784	3E-10		0.123266	[0.085-0.162] unit increase	NR [11722792] (imputed)	N
1035	chr15	59029865	59029866	rs79298553	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	15q21.3		rs79298553-C	0.988784	2E-8		0.110964	[0.073-0.149] unit increase	NR [11722792] (imputed)	N
1035	chr15	59045773	59045774	rs593742	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	15q21.3	ADAM10	rs593742-A	0.7050000000000001	7E-9		1.0752687	[1.05-1.1]	Affymetrix, Illumina [11480632] (imputed)	N
1035	chr15	59045773	59045774	rs593742	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	15q21.3	NR	rs593742-?	NR	5E-6				Affymetrix [7795605] (imputed)	N
1035	chr15	59045773	59045774	rs593742	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	15q21.3	NR	rs593742-?	NR	6E-11		1.06	[1.04- 1.07]	Affymetrix [7795605] (imputed)	N
1035	chr15	59045883	59045884	rs182891158	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs182891158-A	NR	5E-8	(Total_PE)	0.6489	[0.42-0.88] unit increase	Illumina [~ 9300000] (imputed)	N
1035	chr15	59045883	59045884	rs182891158	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q21.3	LIPC	rs182891158-A	NR	2E-9	(PE(18:0;0-20:4;0))	0.7136	[0.48-0.95] unit increase	Illumina [~ 9300000] (imputed)	N
1035	chr15	59053437	59053438	rs143862097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q21.3		rs143862097-C	0.986233	8E-9		0.103695	[0.068-0.139] unit decrease	NR [11722792] (imputed)	N
1035	chr15	59053437	59053438	rs143862097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs143862097-C	0.98623	3E-8		0.0959211	[0.062-0.13] unit increase	NR [11722792] (imputed)	N
1035	chr15	59053437	59053438	rs143862097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	15q21.3		rs143862097-C	0.986185	4E-9		0.10661	[0.071-0.142] unit increase	NR [11722792] (imputed)	N
1035	chr15	59053437	59053438	rs143862097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs143862097-C	0.98623	3E-9		0.104195	[0.07-0.139] unit decrease	NR [11722792] (imputed)	N
1035	chr15	59053437	59053438	rs143862097	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q21.3		rs143862097-C	0.98623	1E-9		0.107036	[0.073-0.141] unit decrease	NR [11722792] (imputed)	N
1035	chr15	59056711	59056712	rs1426652	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q21.3	NA	rs1426652-A	0.1672	2E-10		0.0149	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
1035	chr15	59057022	59057023	rs602602	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	15q21.3		rs602602-?	NR	6E-15				Illumina [NR] (imputed)	N
1035	chr15	59063143	59063144	rs17269439	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	15q21.3	NR	rs17269439-C		2E-6				Illumina [458525]	N
1035	chr15	59072490	59072491	rs7169796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q21.3	NR	rs7169796-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1035	chr15	59078501	59078502	rs411007	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q21.3		rs411007-C	0.42	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1036	chr15	59141705	59141706	rs793571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	15q22.1	NR	rs793571-A	0.7532	2E-9	(male)	0.1229	[0.083-0.163] unit increase	NR [NR] (imputed)	N
1036	chr15	59141705	59141706	rs793571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	15q22.1	MINDY2	rs793571-A	0.7656	1E-9	(male)	0.129	[0.087-0.171] unit increase	NR [NR] (imputed)	N
1036	chr15	59141705	59141706	rs793571	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q22.1	NR	rs793571-?	NR	3E-8		1.05443	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1036	chr15	59141705	59141706	rs793571	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q22.1	NR	rs793571-A	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q22.1	NR	rs431414-T	NR	2E-6				NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	15q22.1	NR	rs431414-T	NR	5E-7				NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	15q22.1	MINDY2	rs431414-T	NR	5E-7			[NR]	NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	15q22.1	NR	rs431414-T	0.1927	4E-6		0.1618	[0.093-0.231] unit increase	NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	15q22.1	MINDY2	rs431414-T	0.1844	1E-6		0.1745	[0.1-0.25] unit increase	NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	15q22.1	NR	rs431414-T	0.1927	7E-8	(male)	0.1233	[0.078-0.168] unit decrease	NR [NR] (imputed)	N
1036	chr15	59147799	59147800	rs431414	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	15q22.1	NR	rs431414-T	0.1844	3E-8	(male)	0.1304	[0.084-0.177] unit decrease	NR [NR] (imputed)	N
1036	chr15	59155049	59155050	rs632811	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q22.1	NR	rs632811-G	0.33	2E-10		0.017750626	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1036	chr15	59155049	59155050	rs632811	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q22.1	NR	rs632811-G	0.33	4E-12		0.0171946	[0.012-0.022] unit decrease	NR [9732723] (imputed)	N
1036	chr15	59174199	59174200	rs71407077	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	15q22.1	NR	rs71407077-C	0.7453	7E-6		0.1297	[0.073-0.186] unit decrease	NR [NR] (imputed)	N
1036	chr15	59174199	59174200	rs71407077	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	15q22.1	NR	rs71407077-C	0.7453	2E-9	(male)	0.1116	[0.075-0.148] unit increase	NR [NR] (imputed)	N
1036	chr15	59174538	59174539	rs7179456	21182207	Salyakina D	2010-12-01	Autism Res	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	15q22.1	RNF111, SLTM	rs7179456-?	0.39	7E-6				Illumina [439282] (imputed)	N
1036	chr15	59175227	59175228	rs11858989	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	15q22.1	NR	rs11858989-T	NR	5E-6				NR [NR] (imputed)	N
1036	chr15	59175227	59175228	rs11858989	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	15q22.1	NR	rs11858989-T	NR	1E-6				NR [NR] (imputed)	N
1036	chr15	59175466	59175467	rs28753701	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q22.1	NR	rs28753701-T	NR	9E-6	(Hispanic)	6.16	[8.83-3.49] unit decrease	Affymetrix [14000000] (imputed)	N
1036	chr15	59197668	59197669	rs35477914	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q22.1	NR	rs35477914-T	NR	9E-7				NR [NR] (imputed)	N
1036	chr15	59199936	59199937	rs17302045	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q22.1	NR	rs17302045-T	NR	4E-6				NR [NR] (imputed)	N
1036	chr15	59212110	59212111	rs3145	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	15q22.1	SLTM	rs3145-A	0.7471	3E-6		0.1323	[0.076-0.188] unit decrease	NR [NR] (imputed)	N
1036	chr15	59212110	59212111	rs3145	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	15q22.1	NR	rs3145-A	0.7471	4E-10	(male)	0.1156	[0.079-0.152] unit increase	NR [NR] (imputed)	N
1036	chr15	59213025	59213026	rs28473013	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	15q22.1	SLTM	rs28473013-T	0.2041	2E-8	(male)	0.1082	[0.071-0.146] unit decrease	NR [NR] (imputed)	N
1036	chr15	59213025	59213026	rs28473013	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	15q22.1	NR	rs28473013-T	0.1842	1E-8	(male)	0.1147	[0.075-0.154] unit decrease	NR [NR] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	3E-8		0.199813	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	2E-8		0.202317	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	2E-8		0.198571	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	1E-8		0.205949	[0.14-0.28] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	3E-8		0.200032	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	2E-8		0.205672	[0.13-0.28] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	3E-8		0.196241	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1036	chr15	59244403	59244404	rs74017329	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.1		rs74017329-C	0.99679	2E-8		0.201713	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
1037	chr15	59254588	59254589	rs182776276	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q22.1	LIPC	rs182776276-G	NR	2E-9	(PE(18:0;0-20:4;0))	0.7125	[0.48-0.94] unit increase	Illumina [~ 9300000] (imputed)	N
1037	chr15	59264998	59264999	rs117399007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q22.1	RNF111	rs117399007-C	0.956554	4E-9		0.0286477	[0.019-0.038] unit increase	Affymetrix [NR] (imputed)	N
1037	chr15	59293604	59293605	rs1665050	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	15q22.2	RNF111	rs1665050-A	0.252	1E-7		1.25	[NR]	Affymetrix [1623390] (imputed)	N
1037	chr15	59326913	59326914	rs138296332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q22.2		rs138296332-T	0.961851	1E-8		0.0628141	[0.041-0.084] unit decrease	NR [11722792] (imputed)	N
1037	chr15	59338395	59338396	rs11634263	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	15q22.2	RNF111	rs11634263-C	0.022	6E-6		0.061	[0.036-0.086] unit decrease	Illumina [7358575] (imputed)	N
1038	chr15	59377939	59377940	rs181181625	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q22.2	LIPC	rs181181625-T	NR	2E-9	(PE(18:0;0-20:4;0))	0.7133	[0.48-0.95] unit increase	Illumina [~ 9300000] (imputed)	N
1038	chr15	59428657	59428658	rs4218	24047820	St Pourcain B	2013-09-18	Mol Autism	Common variation contributes to the genetic architecture of social communication traits.	Social communication problems	5,584 European ancestry children	1,364 European ancestry children	15q22.2	RNF111, MYO1E	rs4218-G	0.29	1E-7		0.1	[0.063-0.137] unit increase	Illumina [~ 2500000] (imputed)	N
1038	chr15	59429159	59429160	rs3191402	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q22.2	MYO1E	rs3191402-A	0.4016	5E-11		0.1191	[0.084-0.155] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1038	chr15	59450078	59450079	rs7175642	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q22.2	MYO1E	rs7175642-T	0.341586	5E-9		0.00859149	[0.0057-0.0115] unit increase	Affymetrix [12370749]	N
1038	chr15	59450078	59450079	rs7175642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.2		rs7175642-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1038	chr15	59453383	59453384	rs2306791	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q22.2	MYO1E	rs2306791-?	NR	9E-13	(S_LDL_P)	0.034667645	NR unit decrease	Illumina [609262]	N
1038	chr15	59453383	59453384	rs2306791	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	15q22.2	MYO1E	rs2306791-?	NR	1E-10	(S_LDL_PL)	0.04154538	NR unit decrease	Illumina [609262]	N
1038	chr15	59465642	59465642	rs35994028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q22.2	MYO1E	rs35994028-GACAA	0.607666	2E-9		0.014091589	[0.0095-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1038	chr15	59471517	59471518	rs78595738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	15q22.2	NR	rs78595738-?	NR	3E-6		0.6929	[0.4-0.99] unit decrease	Illumina [at least 560000] (imputed)	N
1038	chr15	59487929	59487930	rs2306786	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	15q22.2	RNF111, MYO1E, CCNB2	rs2306786-?	0.17	1E-10				Illumina [~ 2000000] (imputed)	N
1039	chr15	59566384	59566385	rs113118892	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine levels	2,045 European ancestry individuals	NA	15q22.2	LIPC	rs113118892-T	NR	9E-9	(PE(18:0;0-20:4;0))	0.7006	[0.46-0.94] unit increase	Illumina [~ 9300000] (imputed)	N
1040	chr15	59654037	59654038	rs114625006	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q22.2	MYO1E	rs114625006-?	NR	2E-6		0.197	[0.085-0.309] unit increase	Illumina [at least 13000000] (imputed)	N
1040	chr15	59684149	59684150	rs117903030	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	15q22.2		rs117903030-?	NR	3E-6		0.497717	[0.29-0.71] unit increase	Illumina [9875426] (imputed)	N
1040	chr15	59684149	59684150	rs117903030	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	15q22.2		rs117903030-?	NR	1E-7		0.6059034	[0.38-0.83] unit increase	Illumina [9842460] (imputed)	N
1040	chr15	59693034	59693035	rs7162851	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.2	FAM81A	rs7162851-?	NR	2E-6	(LPE 18:2)	0.22276005	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1040	chr15	59711690	59711691	rs10519005	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	15q22.2	NR	rs10519005-T	0.46	5E-6		1.26	[1.16-1.36]	Illumina [4058415] (imputed)	N
1040	chr15	59719168	59719169	rs28890483	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q22.2	NR	rs28890483-?	NR	9E-6		1.3904	[NR]	Affymetrix [722112]	N
1041	chr15	59799642	59799643	rs16941452	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex and smoking status)	3,906 Finnish ancestry individuals	NA	15q22.2		rs16941452-G	0.022	3E-6				Illumina [NR] (imputed)	N
1041	chr15	59824986	59824987	rs17302400	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	15q22.2	FAM81A	rs17302400-T	0.13	7E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1042	chr15	59923926	59923927	rs62012358	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q22.2	NR	rs62012358-G	0.33507299999999995	2E-13		0.00822998	[0.0058-0.0106] unit increase	Affymetrix [16582621] (imputed)	N
1042	chr15	59923926	59923927	rs62012358	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q22.2	NR	rs62012358-G	0.33507299999999995	2E-9		0.00726602	[0.0047-0.0098] unit increase	Affymetrix [16582614] (imputed)	N
1042	chr15	59924274	59924275	rs1531638	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q22.2	GCNT3, GTF2A2	rs1531638-?	NR	2E-11		0.466	[0.32-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
1042	chr15	59926945	59926946	rs4775191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q22.2	NR	rs4775191-A	0.338847	1E-15		0.00662886	[0.0049-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
1042	chr15	59926945	59926946	rs4775191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q22.2	NR	rs4775191-A	0.338847	3E-7		0.00474731	[0.0028-0.0067] unit increase	Affymetrix [16582965] (imputed)	N
1042	chr15	59996913	59996914	rs11629813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q22.2		rs11629813-C	0.359956	2E-9		0.014705023	[0.0099-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1042	chr15	59996913	59996914	rs11629813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q22.2		rs11629813-C	0.359961	6E-9		0.014281498	[0.0095-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1043	chr15	60044280	60044281	rs75772740	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs75772740-G	0.01742	3E-9	(CALR)	0.9763	NR unit increase	Illumina [1671387] (imputed)	N
1043	chr15	60082897	60082898	rs35275482	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	15q22.2	BNIP2	rs35275482-C	NR	4E-11	(Enterobacteriales order)	0.54	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1043	chr15	60082897	60082898	rs35275482	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	15q22.2	BNIP2	rs35275482-C	NR	4E-11	(Enterobacteriaceae family)	0.54	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1044	chr15	60203372	60203373	rs56844788	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q22.2	NR	rs56844788-C	NR	9E-6		2.47	[1.66-3.69]	Illumina [13976150] (imputed)	N
1044	chr15	60241508	60241509	rs7172033	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	15q22.2		rs7172033-?	NR	7E-6	(lmp)	1.97		Illumina [11595112] (imputed)	N
1044	chr15	60270749	60270750	rs72739921	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	15q22.2	NR	rs72739921-A	0.831	3E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	6.9930067	[NR]	Affymetrix [> 650000] (imputed)	N
1045	chr15	60368205	60368206	rs335810	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	15q22.2	ANXA2	rs335810-A	0.69	7E-6	(AA)	1.1	[1.06-1.15]	Affymetrix, Illumina [2579389] (imputed)	N
1045	chr15	60368205	60368206	rs335810	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	15q22.2	ANXA2	rs335810-A	0.69	7E-6		1.1	[1.06-1.15]	Affymetrix, Illumina [2579389] (imputed)	N
1045	chr15	60372220	60372221	rs8032150	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	15q22.2	intergenic	rs8032150-C	NR	7E-6		59.4319	[33.47-85.39] unit decrease	Illumina [6995140] (imputed)	N
1046	chr15	60432920	60432921	rs147577476	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	15q22.2	FOXB1, MESTP2, ANXA2	rs147577476-G	NR	2E-6	(sleep offset)	0.6396	[0.37-0.91] unit increase	Affymetrix [7141204] (imputed)	N
1046	chr15	60439577	60439578	rs12443021	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q22.2	NR	rs12443021-?		2E-6				Illumina [4322238] (imputed)	N
1046	chr15	60447837	60447838	rs77993859	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	15q22.2	intergenic	rs77993859-G	NR	8E-6	(AA)	0.82	unit decrease	Illumina [at least 5086170] (imputed)	N
1046	chr15	60484166	60484167	rs7167065	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs7167065-C	0.01568	8E-9	(RAB14)	0.02099	NR unit increase	Illumina [1671387] (imputed)	N
1046	chr15	60517275	60517276	rs338419	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q22.2	Intergenic	rs338419-T	0.2357071	8E-14	(EA, Annexin A2)	0.3938	[0.29-0.5] unit increase	Affymetrix [509946]	N
1047	chr15	60609292	60609293	rs61381915	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANXA2	5,360 Icelandic ancestry individuals	NA	15q22.2		rs61381915-T	0.1094	6E-13		0.21099	[0.15-0.27] unit increase	Illumina [7506463] (imputed)	N
1047	chr15	60609292	60609293	rs61381915	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q22.2	ANXA2	rs61381915-C	0.8915625	2E-10	(ANXA2, 4961_17_1)	0.24430603	[0.17-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
1048	chr15	60687250	60687251	rs16942556	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q22.2	NR	rs16942556-?	NR	3E-6	(Native Hawaiian)	1.1184	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1048	chr15	60714879	60714879	rs113438100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q22.2		rs113438100-CA	NR	5E-10		0.0164	[0.011-0.021] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1048	chr15	60723935	60723936	rs78087538	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	15q22.2		rs78087538-T	0.914847	4E-6		0.0150518	[0.0085-0.0216] unit decrease	Illumina [13900000] (imputed)	N
1048	chr15	60737960	60737961	rs72746677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs72746677-T	NR	2E-9		0.0436	[0.029-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1048	chr15	60759010	60759011	rs12907068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	15q22.2	NR	rs12907068-G	0.13721799999999995	2E-8		0.0234292	[0.015-0.032] unit increase	Affymetrix [16577424] (imputed)	N
1048	chr15	60761488	60761489	rs62003261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q22.2	NARG2	rs62003261-C	0.192868	7E-12		0.019250853	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr15	60761488	60761489	rs62003261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.2	NARG2	rs62003261-C	0.192859	4E-9		0.016497675	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr15	60765215	60765216	rs11637887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.2		rs11637887-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1048	chr15	60776990	60776991	rs36032232	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q22.2	ICE2, RP11-745A24.1, ANXA2, RP11-745A24.2, RP11-745A24.3, RORA, RORA-AS1	rs36032232-G	0.1501004	7E-66	(Annexin A2)	0.97	[0.87-1.07] unit increase	Affymetrix [509946]	N
1048	chr15	60781512	60781513	rs3743266	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	15q22.2		rs3743266-T	NR	2E-7		0.00611602	[0.0038-0.0084] years increase	NR [7400000] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	15q22.2		rs3743266-T	NR	2E-12		0.023999376	[0.017-0.031] years increase	NR [7400000] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q22.2		rs3743266-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs3743266-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	15q22.2	NR	rs3743266-C	0.317244115313409	4E-6				NR [9276018] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	15q22.2	RORA	rs3743266-T	0.68	2E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1048	chr15	60781512	60781513	rs3743266	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	15q22.2	RORA	rs3743266-C	0.32	8E-7		2.0	[1.22-2.78] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1049	chr15	60818249	60818250	rs1866007	29751835	Hu H	2018-05-11	BMC Med Genet	Genome-wide association study identified ATP6V1H locus influencing cerebrospinal fluid BACE activity.	Cerebrospinal fluid beta-site APP cleaving enzyme levels	86 European ancestry Alzheimer's disease cases, 163 European ancestry mild cognitive impairment cases, 91 European ancestry controls	NR	15q22.2	RORA-AS1, RORA	rs1866007-?	NR	6E-6				Illumina [519442]	N
1049	chr15	60836793	60836794	rs17270216	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	15q22.2		rs17270216-G	0.22	1E-8		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1049	chr15	60841274	60841275	rs2028122	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q22.2	RORA	rs2028122-G	NR	3E-8		0.0349095	NR unit decrease	NR [NR] (imputed)	N
1049	chr15	60842257	60842258	rs34324867	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.2	NR	rs34324867-A	0.203067	4E-13		0.028517	[0.021-0.036] unit increase	NR [19129689] (imputed)	N
1049	chr15	60843584	60843585	rs8033552	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q22.2	NR	rs8033552-A	NR	3E-8		5.565	z score increase	Affymetrix [10847151] (imputed)	N
1049	chr15	60844846	60844847	rs17191491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q22.2	NR	rs17191491-G	NR	3E-13		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60844846	60844847	rs17191491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs17191491-G	NR	1E-28		0.0267	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60844846	60844847	rs17191491	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q22.2	RORA	rs17191491-A	0.570177	3E-8		0.0109387	[0.0071-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
1049	chr15	60846293	60846294	rs7165792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q22.2		rs7165792-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1049	chr15	60855199	60855200	rs10851685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs10851685-A	NR	1E-45		0.0492	[0.042-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60855199	60855200	rs10851685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q22.2	NR	rs10851685-A	NR	3E-10		0.0219	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60878029	60878030	rs340005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	15q22.2		rs340005-A	NR	5E-27		0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1049	chr15	60878029	60878030	rs340005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q22.2		rs340005-A	NR	3E-17		0.0204	[0.016-0.025] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1049	chr15	60878029	60878030	rs340005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q22.2		rs340005-A	NR	2E-34		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1049	chr15	60878029	60878030	rs340005	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q22.2	RORA-AS1	rs340005-?		2E-20		0.0549	[0.043-0.066] unit decrease	Illumina [31500000] (imputed)	N
1049	chr15	60878029	60878030	rs340005	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q22.2	NR	rs340005-G	0.379693	7E-51		0.0315494	[0.027-0.036] unit decrease	NR [NR]	N
1049	chr15	60878029	60878030	rs340005	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	15q22.2	NR	rs340005-?	NR	4E-9		0.0254	[0.017-0.034] unit decrease	Illumina [~ 7800000] (imputed)	N
1049	chr15	60878029	60878030	rs340005	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	15q22.2	RORA	rs340005-A	0.38	1E-15		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1049	chr15	60878029	60878030	rs340005	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	15q22.2	RORA	rs340005-A	0.62	4E-14	(BMI-adjusted)	0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1049	chr15	60878029	60878030	rs340005	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	15q22.2	RORA	rs340005-A	NR	2E-12				NR [2501749] (imputed)	N
1049	chr15	60878029	60878030	rs340005	22010049	Middelberg RP	2011-11-01	Hum Mol Genet	Loci affecting gamma-glutamyl transferase in adults and adolescents show age x SNP interaction and cardiometabolic disease associations.	Gamma glutamyl transferase levels	12,526 European ancestry individuals	NA	15q22.2	RORA	rs340005-G	0.36	2E-8		0.084	[0.055-0.113] unit decrease	Illumina [2380486] (imputed)	N
1049	chr15	60878803	60878804	rs76263497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs76263497-A	NR	2E-23		0.0332	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60878803	60878804	rs76263497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q22.2	NR	rs76263497-A	NR	9E-13		0.0238	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60883280	60883281	rs339969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	15q22.2		rs339969-C	0.384161	2E-8		0.0237784	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q22.2		rs339969-C	0.39	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q22.2		rs339969-A	NR	3E-19		0.0211	[0.016-0.026] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q22.2		rs339969-A	NR	2E-167		0.0587	[0.055-0.063] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	15q22.2		rs339969-A	0.906488	4E-18		0.0517593	[0.04-0.063] unit increase	Illumina [13476165] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q22.2		rs339969-A	NR	8E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1049	chr15	60883280	60883281	rs339969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q22.2		rs339969-A	NR	3E-15		0.0168	[0.013-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1049	chr15	60883280	60883281	rs339969	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q22.2	RORA	rs339969-C	0.386089	2E-197		0.0156667	[0.015-0.017] unit decrease	Affymetrix [13995440] (imputed)	N
1049	chr15	60883280	60883281	rs339969	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q22.2	RORA	rs339969-C	0.386077	1E-22		0.00381502	[0.003-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
1049	chr15	60883280	60883281	rs339969	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q22.2	RORA	rs339969-A	0.61	4E-9		5.9	z-score increase	Affymetrix [4314223] (imputed)	N
1049	chr15	60883280	60883281	rs339969	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q22.2	RORA	rs339969-A	0.61	4E-16		8.14	z-score increase	Affymetrix [4312306] (imputed)	N
1049	chr15	60883280	60883281	rs339969	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Chitinase-3-like protein 1 levels	21,758 European ancestry individuals	9,173 individuals	15q22.2		rs339969-A	0.62	1E-16		0.0681	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1049	chr15	60883280	60883281	rs339969	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q22.2	RORA	rs339969-A	0.614323	2E-6		0.014711	[0.0086-0.0208] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1049	chr15	60883280	60883281	rs339969	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q22.2	RORA	rs339969-A	0.619238	2E-10		0.016841	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1049	chr15	60883280	60883281	rs339969	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	15q22.2	RORA-AS1	rs339969-?	NR	2E-16		0.05742	[0.044-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1049	chr15	60883280	60883281	rs339969	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	15q22.2	RORA	rs339969-A	0.62	7E-20		4.5	[3.90-5.10] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1049	chr15	60883393	60883394	rs55754498	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q22.2	NR	rs55754498-T	0.05317	2E-8		0.003008	[0.002-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1049	chr15	60884593	60884594	rs150952015	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs150952015-T	NR	4E-26		0.0566	[0.046-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr15	60884593	60884594	rs150952015	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	15q22.2	NR	rs150952015-T	NR	1E-10		0.0345	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr15	60884828	60884835	rs371824358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.2	RP11-219B17.1, RORA	rs371824358-G	0.267036	2E-10		0.016163118	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60884828	60884835	rs371824358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2	RP11-219B17.1, RORA	rs371824358-G	0.267013	2E-10		0.016036807	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60894964	60894965	rs340029	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	15q22.2	RORA	rs340029-T	NR	4E-9		0.032	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1049	chr15	60896141	60896142	rs340030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.2		rs340030-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1049	chr15	60900962	60900963	rs980000	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q22.2	RORA	rs980000-T	0.26	2E-6	(AA)	4.69	[2.75-6.63] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	15q22.2		rs12591786-C	0.841445	9E-9		0.0328964	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q22.2		rs12591786-C	0.841445	1E-9		0.034946	[0.024-0.046] unit decrease	NR [11722792] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	15q22.2		rs12591786-C	0.841445	3E-9		0.0340541	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	15q22.2		rs12591786-C	0.841445	2E-8		0.0321854	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q22.2		rs12591786-T	0.17	4E-11		6.59	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q22.2		rs12591786-T	0.17	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q22.2	NR	rs12591786-T	0.1514	7E-13				NR [9056863] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q22.2	NR	rs12591786-T	0.1514	1E-9				NR [9056863] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	15q22.2	RORA	rs12591786-C	0.842256	3E-10		0.019576	[0.013-0.026] unit increase	Affymetrix [19400838] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	15q22.2	RORA	rs12591786-C	0.842038	4E-10		0.020213	[0.014-0.027] unit increase	Affymetrix [19400838] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q22.2	RORA	rs12591786-C	0.841082	2E-10		0.0176878	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q22.2	RORA	rs12591786-?	NR	3E-8		0.0203	[0.014-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
1049	chr15	60902511	60902512	rs12591786	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	15q22.2	RORA-AS1	rs12591786-C	0.841	2E-7		0.0111	[0.007-0.0152] unit increase	Affymetrix [~ 7740000] (imputed)	N
1049	chr15	60904847	60904848	rs11855220	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs11855220-G	0.361656	9E-12				Affymetrix, Illumina [24332387] (imputed)	N
1049	chr15	60904860	60904870	rs535763563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q22.2	NR	rs535763563-G	NR	2E-10		0.0299	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr15	60904860	60904870	rs535763563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.2	RP11-219B17.1, RORA	rs535763563-G	0.9105765	3E-10		0.026396018	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60908306	60908307	rs340025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	15q22.2		rs340025-C	0.58	1E-8		0.01	nmol/L decrease	NR [NR] (imputed)	N
1049	chr15	60908306	60908307	rs340025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q22.2		rs340025-C	0.58	7E-13				NR [NR] (imputed)	N
1049	chr15	60908306	60908307	rs340025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q22.2		rs340025-C	0.58	5E-9		0.009	% increase	NR [NR] (imputed)	N
1049	chr15	60908306	60908307	rs340025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	15q22.2		rs340025-C	0.58	1E-7		0.01	U/L increase	NR [NR] (imputed)	N
1049	chr15	60908306	60908307	rs340025	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	15q22.2		rs340025-C	0.58	6E-19		0.017	U/L increase	NR [NR] (imputed)	N
1049	chr15	60908306	60908307	rs340025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.2	NR	rs340025-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1049	chr15	60908306	60908307	rs340025	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q22.2	NA	rs340025-T	0.4081	1E-14		0.0127	[0.0096-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1049	chr15	60908306	60908307	rs340025	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q22.2	NA	rs340025-T	0.4081	1E-14		0.0127	[0.0096-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
1049	chr15	60908306	60908307	rs340025	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	15q22.2	RORA	rs340025-T	NR	3E-10				NR [2501549] (imputed)	N
1049	chr15	60910549	60910550	rs3784609	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	15q22.2	RORA	rs3784609-?	NR	3E-6		0.005	[NR] unit decrease	Illumina [478011]	N
1049	chr15	60914261	60914262	rs168144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.2		rs168144-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1049	chr15	60917078	60917079	rs28408562	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q22.2	RORA	rs28408562-C	0.553002	1E-8		0.00784012	[0.0051-0.0105] unit decrease	Affymetrix [12370749]	N
1049	chr15	60920404	60920405	rs35784313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q22.2	NR	rs35784313-C	NR	1E-9		0.0231	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60920404	60920405	rs35784313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs35784313-C	NR	3E-18		0.0318	[0.025-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr15	60928480	60928481	rs58558667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q22.2	NR	rs58558667-T	0.371029	3E-12		0.013443	[0.0097-0.0172] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1049	chr15	60931255	60931256	rs12594561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q22.2		rs12594561-T	0.433421	2E-8		0.0214423	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1049	chr15	60931255	60931256	rs12594561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	15q22.2		rs12594561-T	0.433397	2E-8		0.0208899	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1049	chr15	60931255	60931256	rs12594561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q22.2		rs12594561-T	0.433397	9E-12		0.0264441	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1049	chr15	60931255	60931256	rs12594561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	15q22.2		rs12594561-T	0.433397	2E-9		0.0234061	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1049	chr15	60931470	60931471	rs1054156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	15q22.2		rs1054156-T	0.434438	3E-8		0.0231695	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1049	chr15	60937401	60937402	rs339978	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	15q22.2	RORA	rs339978-T	0.2	2E-6	(AA)	5.31	[3.13-7.49] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1049	chr15	60938815	60938816	rs8033609	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q22.2	NR	rs8033609-C	0.4549	1E-8		0.0265	[0.017-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1049	chr15	60943058	60943059	rs339995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs339995-A	0.409887	3E-15				Affymetrix, Illumina [24653286] (imputed)	N
1049	chr15	60943058	60943059	rs339995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs339995-A	0.408834	2E-17				Affymetrix, Illumina [24558453] (imputed)	N
1049	chr15	60943844	60943845	rs9806453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.2	RORA	rs9806453-T	0.369277	3E-11		0.015240122	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60945980	60945980	rs553725343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.2	RORA	rs553725343-AT	0.368691	6E-15		0.018006861	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60945980	60945980	rs553725343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q22.2	RORA	rs553725343-AT	0.368713	1E-17		0.019690203	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr15	60945990	60945990	rs397719187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q22.2		rs397719187-AT	NR	5E-9		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1049	chr15	60945990	60945990	rs397719187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q22.2		rs397719187-AT	NR	1E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1049	chr15	60945990	60945990	rs397719187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q22.2		rs397719187-AT	NR	6E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1049	chr15	60947762	60947763	rs339998	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q22.2	RORA-AS1	rs339998-C	0.604651	2E-24		0.00539047	[0.0043-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
1049	chr15	60947762	60947763	rs339998	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q22.2	NR	rs339998-T	0.394223	5E-9		0.00499607	[0.0033-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1049	chr15	60947762	60947763	rs339998	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q22.2	NR	rs339998-T	0.394223	8E-7		0.00490488	[0.003-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
1050	chr15	60957247	60957248	rs41356552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q22.2		rs41356552-A	0.796649	3E-8		0.0283217	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1050	chr15	60957247	60957248	rs41356552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs41356552-G	NR	4E-35		0.0366	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1050	chr15	60959088	60959089	rs7166370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q22.2	NR	rs7166370-C	0.436971	2E-18		0.016404	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1050	chr15	60977881	60977882	rs2113944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q22.2	NR	rs2113944-T	0.22278299999999995	3E-15		0.0271852	[0.021-0.034] unit increase	Affymetrix [16580851] (imputed)	N
1050	chr15	60978245	60978246	rs35698268	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q22.2	NR	rs35698268-G	0.223692	5E-10		0.00967281	[0.0066-0.0127] unit increase	Affymetrix [16578495] (imputed)	N
1050	chr15	60979811	60979812	rs2414679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q22.2	NR	rs2414679-G	0.44257	1E-16		0.015704	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1050	chr15	60979811	60979812	rs2414679	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	15q22.2	NR	rs2414679-?	NR	2E-8		0.023	[0.015-0.031] unit increase	Illumina [~ 7800000] (imputed)	N
1050	chr15	60991812	60991813	rs56397838	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs56397838-C	0.0122	1E-8	(LRRK2)	0.0513	NR unit increase	Illumina [1671387] (imputed)	N
1050	chr15	61007667	61007668	rs2433025	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.2	NR	rs2433025-A	0.398446	4E-22		0.0307218	[0.024-0.037] unit decrease	NR [19129689] (imputed)	N
1050	chr15	61010994	61010995	rs7173461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q22.2		rs7173461-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1050	chr15	61038142	61038143	rs76194223	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	15q22.2	RORA	rs76194223-T	NR	2E-8		0.258	[0.17-0.35] unit increase	Affymetrix [7701190] (imputed)	N
1050	chr15	61039386	61039387	rs7172011	34536413	Daya M	2021-09-15	J Allergy Clin Immunol	Multi-ethnic genome-wide and HLA association study of total serum IgE.	IgE levels	5,008 African American individuals, 12,908 European ancestry individuals, 3,985 Hispanic individuals	NA	15q22.2		rs7172011-T	0.19	4E-13				Affymetrix, Illumina [NR] (imputed)	N
1050	chr15	61047925	61047926	rs9920577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q22.2		rs9920577-A	NR	1E-13		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1050	chr15	61049568	61049569	rs7183955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q22.2	NR	rs7183955-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1050	chr15	61049568	61049569	rs7183955	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	15q22.2	RORA	rs7183955-?	NR	8E-12		1.063	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1050	chr15	61049568	61049569	rs7183955	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q22.2	RORA	rs7183955-A	NR	2E-21		1.086	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1050	chr15	61057356	61057357	rs2279293	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	15q22.2	RORA	rs2279293-G	0.145	5E-11		0.69	[0.61-0.77]	Illumina [11310926] (imputed)	N
1050	chr15	61060706	61060707	rs12591650	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	15q22.2	RORA	rs12591650-A	0.85	7E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	2,894 European ancestry cases, 472,484 European ancestry controls, 18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	15q22.2		rs10519067-A	NR	1E-8		0.0785	[0.051-0.106] unit decrease	Affymetrix, Illumina [25844049] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	15q22.2		rs10519067-A	0.213709834	4E-8		0.08121239	[0.052-0.11] unit decrease	Illumina [13429010] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	15q22.2		rs10519067-A	NR	3E-15		0.0908	[0.068-0.113] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	15q22.2		rs10519067-A	0.211328152	1E-8		0.13268164	[0.087-0.179] unit decrease	Illumina [13429980] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	15q22.2		rs10519067-A	NR	7E-19		0.1039	[0.081-0.127] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs10519067-A	0.147317	6E-19				Affymetrix, Illumina [19872809] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	15q22.2		rs10519067-A	0.210494286	2E-11		0.8747046	[0.84126822-0.909469966]	Illumina [8919992] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	30787307	Daya M	2019-02-20	Nat Commun	Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations.	Adult asthma	4,235 African American Afro-Caribbean cases, 5,283 African American Afro-Caribbean controls, 2774 Hispanic cases, 2,362 Hispanic controls	NA	15q22.2	RORA	rs10519067-G	0.71	2E-7		1.18	[1.18-1.33]	Affymetrix, Illumina [23328733] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	15q22.2	RORA	rs10519067-?	NR	6E-13		1.0752687	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1050	chr15	61068346	61068347	rs10519067	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	15q22.2	RORA	rs10519067-G	0.86	9E-13		1.055	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1050	chr15	61068703	61068704	rs10519068	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	15q22.2	NR	rs10519068-G	0.8722	2E-20		1.0868385	[1.07-1.11]	Affymetrix [15688218] (imputed)	N
1050	chr15	61068703	61068704	rs10519068	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	15q22.2	NR	rs10519068-G	0.8722	3E-24		1.0874293	[1.07-1.1]	Affymetrix [15688218] (imputed)	N
1050	chr15	61068703	61068704	rs10519068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	15q22.2		rs10519068-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1050	chr15	61068703	61068704	rs10519068	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	15q22.2	RORA	rs10519068-G	0.8725	2E-12		1.1764705	[1.12-1.23]	Affymetrix [33771858] (imputed)	N
1050	chr15	61068703	61068704	rs10519068	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	15q22.2	RORA	rs10519068-?	NR	4E-11		1.1	[1.069-1.132]	Illumina [13747813] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q22.2	RORA	rs34986765-C	0.131488	3E-13		0.023876142	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.2	RORA	rs34986765-C	0.131502	1E-13		0.024212513	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	15q22.2	NR	rs34986765-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.2	NR	rs34986765-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.2	NR	rs34986765-?	NR	5E-18				Affymetrix [~ 8270000] (imputed)	N
1050	chr15	61069200	61069201	rs34986765	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	15q22.2	RORA	rs34986765-T	0.870253	2E-19		1.0862781	[1.07-1.1]	Affymetrix [8274727] (imputed)	N
1050	chr15	61069420	61069421	rs11071558	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	15q22.2	RORA, NARG2, VPS13C	rs11071558-A	0.86	1E-9		1.1235955	[1.09-1.16]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1050	chr15	61069420	61069421	rs11071558	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	15q22.2	RORA, NARG2, VPS13C	rs11071558-G	0.14	8E-11		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	15q22.2		rs11071559-T	NR	1E-18		0.0833	[0.065-0.102] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	15q22.2		rs11071559-T	0.231406462	3E-14		0.12352817	[0.092-0.155] unit decrease	Illumina [13429513] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	15q22.2	RORA	rs11071559-T	0.128023221080157	4E-18		0.08468739	[0.066-0.104] unit decrease	Affymetrix [35186738] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q22.2	NR	rs11071559-T	0.13051	5E-14		0.0222	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	15q22.2	RORA	rs11071559-C	0.877	4E-11		0.042	[0.03-0.054] unit decrease	NR [NR] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	15q22.2	RORA	rs11071559-C	0.877	5E-11		0.042	[0.03-0.054] unit decrease	NR [7647814] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	15q22.2	RORA	rs11071559-C	0.86	5E-37				NR [> 9500000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	15q22.2	RORA	rs11071559-C	0.859587	2E-27		1.0986217	[1.08008159056028-1.11748006536529]	NR [9572556] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	15q22.2	RORA, RORA-AS2, RORA-AS1, ICE2, ANXA2, FOXB1	rs11071559-C	0.87197	2E-19		1.0895382	[1.06-1.11]	Affymetrix [32463443] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	15q22.2	RORA	rs11071559-T	0.1281	7E-20				Affymetrix [15688218] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	15q22.2	RORA, ANXA2, VPS13C	rs11071559-C	0.872	3E-15		1.205	[1.151-1.262]	Affymetrix [10894596] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	15q22.2	RORA, ANXA2, VPS13C	rs11071559-C	0.872	5E-6		0.958	[0.55-1.37] unit decrease	Affymetrix [10894596] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	15q22.2	RORA	rs11071559-T	0.128561	2E-12		0.09462308	[0.068-0.121] unit decrease	Affymetrix [7288503] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	15q22.2	RORA	rs11071559-C	0.868	3E-6		1.073	[1.04-1.1]	Affymetrix [9000000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	15q22.2	RORA	rs11071559-?	NR	2E-37		1.145	[1.12-1.17]	Affymetrix [9000000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q22.2	RORA	rs11071559-C	NR	4E-24		1.107	[1.09-1.13]	Affymetrix [9000000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	15q22.2		rs11071559-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.2		rs11071559-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	15q22.2	RORA	rs11071559-C	0.85	8E-7		1.16	[1.10-1.24]	Illumina [2387926] (imputed)	N
1050	chr15	61069987	61069988	rs11071559	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	15q22.2	RORA	rs11071559-C	0.86	1E-7		1.18	[1.11-1.25]	Illumina [582892]	N
1050	chr15	61070182	61070183	rs922782	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.2	NR	rs922782-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1050	chr15	61071790	61071791	rs1963497	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	15q22.2	RORA	rs1963497-A	0.182496	2E-11		0.09759928	[0.069-0.126] unit decrease	Affymetrix [7288503] (imputed)	N
1050	chr15	61073801	61073802	rs17270446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs17270446-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1050	chr15	61076311	61076312	rs1680446	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.2	NR	rs1680446-T	0.034866	2E-9		0.0505843	[0.034-0.067] unit decrease	NR [19129689] (imputed)	N
1051	chr15	61111317	61111318	rs4775300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q22.2		rs4775300-G	0.103108	6E-9		0.0192575	[0.013-0.026] unit increase	Illumina [13479295] (imputed)	N
1051	chr15	61111317	61111318	rs4775300	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q22.2	RORA	rs4775300-?	NR	9E-9		0.026890008	[0.018-0.036] unit increase	Illumina [27896057] (imputed)	N
1051	chr15	61114402	61114403	rs9302216	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	15q22.2	RORA	rs9302216-G	0.31	7E-8		1.1235955	[1.08-1.18]	Affymetrix, Illumina [16531985] (imputed)	N
1051	chr15	61157402	61157403	rs12909611	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q22.2	RORA	rs12909611-C	NR	8E-6		1.0524	NR	Affymetrix, Illumina [8278136] (imputed)	N
1051	chr15	61164198	61164199	rs1902618	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	15q22.2	RORA	rs1902618-?	NR	2E-6	(FEV1 decline in asthmatics)	0.2202	[0.13-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
1051	chr15	61168182	61168183	rs77951645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q22.2		rs77951645-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1051	chr15	61168182	61168183	rs77951645	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.2	NR	rs77951645-G	0.0163568	3E-25		0.126237	[0.1-0.15] unit increase	NR [19129689] (imputed)	N
1051	chr15	61175323	61175324	rs541395042	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		15q22.2	RORA	rs541395042-?	NR	8E-7		206.11	[4.50-9436.68]	Illumina [11526719] (imputed)	N
1051	chr15	61183701	61183702	rs7174236	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.2	NARG2	rs7174236-?	NR	3E-6	(TAG 52:1)	0.20044638	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1051	chr15	61183701	61183702	rs7174236	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.2	NARG2	rs7174236-?	NR	3E-6	(TAG 50:2)	0.20254956	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1051	chr15	61189608	61189609	rs3803487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q22.2		rs3803487-A	NR	1E-30		0.0235	[0.02-0.027] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1051	chr15	61190010	61190011	rs17237465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	15q22.2		rs17237465-C	0.410999	2E-16		0.0281178	[0.021-0.035] unit increase	Illumina [13478792] (imputed)	N
1051	chr15	61190010	61190011	rs17237465	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	15q22.2	RORA	rs17237465-T	0.6666	2E-14		0.0055	[0.0041-0.0069] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1051	chr15	61190010	61190011	rs17237465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	15q22.2	RORA	rs17237465-?	NR	1E-15		0.02874	[0.022-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1051	chr15	61194233	61194234	rs2899663	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q22.2	NA	rs2899663-A	0.4883	2E-9		0.0098	[0.0067-0.0129] unit decrease	NR [~ 27400000] (imputed)	N
1051	chr15	61201423	61201424	rs2062091	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	15q22.2	RORA	rs2062091-C	NR	6E-6		0.0358	[0.0203-0.0513] unit increase	Illumina [307238]	N
1051	chr15	61202856	61202857	rs8042228	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	15q22.2		rs8042228-A	0.4191	1E-8		0.0669	[0.044-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1052	chr15	61213563	61213564	rs4775319	29884837	Reyes-Gibby CC	2018-06-08	Sci Rep	Genome-wide association study identifies genes associated with neuropathy in patients with head and neck cancer.	Neuropathic pain in head and neck cancer	130 European ancestry cases, 913 European ancestry controls	NA	15q22.2	RORA	rs4775319-G	0.35	1E-8		1.59	[1.36, 1.87]	Illumina [714494]	N
1052	chr15	61267095	61267096	rs12912233	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	15q22.2	RORA	rs12912233-T	0.46	6E-7		0.15	[NR] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1052	chr15	61313141	61313142	rs4775348	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.2	NR	rs4775348-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1052	chr15	61318008	61318009	rs1403738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.2	RORA	rs1403738-T	NR	3E-8		0.0230569	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1052	chr15	61321579	61321580	rs17270752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.2	RORA	rs17270752-A	NR	2E-11		0.0322643	[0.023-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1052	chr15	61321579	61321580	rs17270752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.2	RORA	rs17270752-A	NR	2E-8		0.0271755	[0.018-0.037] unit decrease	Affymetrix [321169] (imputed)	N
1052	chr15	61323413	61323414	rs55764737	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q22.2	NR	rs55764737-C	NR	5E-8		0.5313	[0.34-0.72] SD units decrease	NR [10700000] (imputed)	N
1052	chr15	61324704	61324705	rs8035549	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q22.2	NR	rs8035549-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1052	chr15	61324704	61324705	rs8035549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q22.2		rs8035549-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1052	chr15	61326948	61326949	rs8028254	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.2	NR	rs8028254-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1052	chr15	61329787	61329788	rs809736	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	15q22.2	RORA	rs809736-?	0.17	8E-6	(response)	1.52	[1.27-1.83]	Affymetrix [430198]	N
1052	chr15	61336441	61336442	rs7172342	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	15q22.2	RORA	rs7172342-?	NR	4E-6	(Negative/disorganized symptoms)	0.0795	[NR] unit decrease	Affymetrix [696491]	N
1053	chr15	61352406	61352407	rs78141454	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs78141454-C	0.01394	3E-8	(ABAT)	1.976	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr15	61352406	61352407	rs78141454	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs78141454-C	0.01394	1E-8	(COQ9)	0.01895	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr15	61359897	61359898	rs117706984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs117706984-A	0.01045	3E-8	(PSMB6)	0.0663	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr15	61371978	61371979	rs7171287	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q22.2	NR	rs7171287-G	0.2	3E-6		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
1053	chr15	61378609	61378610	rs782908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.2	RORA	rs782908-A	NR	2E-8		0.0221433	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1053	chr15	61403913	61403913	rs5813071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.2	RORA	rs5813071-TA	NR	5E-8		0.01638	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1053	chr15	61409534	61409535	rs113388145	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q22.2	RORA	rs113388145-T	0.951	6E-6		0.0865	[0.049-0.124] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1053	chr15	61410094	61410095	rs813017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs813017-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1053	chr15	61412413	61412414	rs8035323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.2	NR	rs8035323-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1053	chr15	61445513	61445514	rs8033510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.2	NR	rs8033510-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1053	chr15	61445513	61445514	rs8033510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.2		rs8033510-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1053	chr15	61445513	61445514	rs8033510	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q22.2	NA	rs8033510-T	0.3636	2E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1053	chr15	61456052	61456053	rs12916023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q22.2	Intergenic	rs12916023-A	0.4947	1E-8	(MTAG)	0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1053	chr15	61461450	61461451	rs4775367	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q22.2	NR	rs4775367-?	NR	1E-6		4.847	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1053	chr15	61466892	61466893	rs7171405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q22.2		rs7171405-A	0.2432	8E-10		0.0101	[0.007-0.0132] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1053	chr15	61466892	61466893	rs7171405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q22.2	Intergenic	rs7171405-A	0.2432	1E-10	(MTAG)	0.0098	[0.0069-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr15	61476935	61476936	rs4775373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q22.2		rs4775373-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1054	chr15	61489313	61489314	rs55870008	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q22.2	RORA	rs55870008-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1054	chr15	61500351	61500352	rs112248293	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	15q22.2		rs112248293-A	0.024318	3E-9		1.8208302	NR	Affymetrix [7846216] (imputed)	N
1054	chr15	61519858	61519859	rs76052316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs76052316-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1054	chr15	61555159	61555160	rs151140284	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	15q22.2		rs151140284-T	0.01721	7E-6		2.505	[1.678-3.738]	Affymetrix [7975321] (imputed)	N
1054	chr15	61558291	61558292	rs4539540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs4539540-T	0.0122	4E-9	(ELAVL1)	0.1168	NR unit increase	Illumina [1671387] (imputed)	N
1054	chr15	61592151	61592152	rs193291640	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	15q22.2	RP11-507B12.2	rs193291640-A	0.9965	3E-6		0.389	[0.23-0.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr15	61592537	61592538	rs146924653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	15q22.2	RP11-507B12.2	rs146924653-C	0.9965	1E-7		0.4426	[0.28-0.61] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr15	61597123	61597124	rs4375600	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q22.2	NR	rs4375600-G	0.913	7E-8		0.0208323	[0.013-0.028] unit decrease	NR [9732723] (imputed)	N
1055	chr15	61603932	61603932	rs5813093	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	15q22.2	NR	rs5813093-?		1E-9		0.0155254	[0.011-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1055	chr15	61609612	61609613	rs4272977	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.2	NR	rs4272977-G	0.0510318	3E-12		0.0489883	[0.035-0.063] unit decrease	NR [19129689] (imputed)	N
1055	chr15	61662480	61662481	rs72741684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q22.2		rs72741684-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1055	chr15	61681403	61681404	rs7171476	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	15q22.2	NR	rs7171476-T	0.324605	9E-7		1.137	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1055	chr15	61702778	61702779	rs3884558	23319801	Rafiq S	2013-01-14	Cancer Res	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 European ancestry early-onset cases	1,516 European ancestry early-onset cases	15q22.2	RORa	rs3884558-?	0.07	4E-6		1.46	[1.24-1.72]	Illumina [487496]	N
1055	chr15	61702778	61702779	rs3884558	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	15q22.2	intergenic	rs3884558-?	NR	5E-6	(SF10)			Affymetrix [5476100] (imputed)	N
1056	chr15	61772678	61772679	rs62005993	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	15q22.2	TNS1	rs62005993-?		1E-8				NR [7428630] (imputed)	N
1056	chr15	61772678	61772679	rs62005993	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	15q22.2	DNAJC13, ACAD11, NPHP3, ACKR4, UBA5	rs62005993-?		5E-8				NR [7428630] (imputed)	N
1056	chr15	61802202	61802203	rs12901945	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs12901945-A	NR	2E-12		1.0508		Affymetrix [9869154] (imputed)	N
1056	chr15	61802202	61802203	rs12901945	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		RORA, VPS13C	rs12901945-A	NR	8E-8		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
1056	chr15	61817210	61817211	rs532282237	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q22.2	NR	rs532282237-C	NR	6E-7	(Hispanic)	12.51	[7.7-17.31] unit increase	Affymetrix [14000000] (imputed)	N
1056	chr15	61840102	61840103	rs4775413	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	15q22.2	NR	rs4775413-?	NR	2E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
1056	chr15	61854002	61854003	rs12898315	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	15q22.2		rs12898315-?	NR	1E-10		0.0221	NR unit increase	NR [4428082] (imputed)	N
1056	chr15	61854002	61854003	rs12898315	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q22.2	VPS13C	rs12898315-?	NR	3E-9		1.0582011	[1.04-1.08]	Illumina [8000000] (imputed)	N
1056	chr15	61854662	61854663	rs12903146	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q22.2	NR	rs12903146-A	NR	4E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
1056	chr15	61854662	61854663	rs12903146	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q22.2	VPS14C	rs12903146-A	0.52	3E-10		1.067	[1.046-1.089]	Affymetrix, Illumina [9005918] (imputed)	N
1056	chr15	61856262	61856263	rs35225048	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q22.2	NR	rs35225048-?	NR	5E-12		1.062688	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1056	chr15	61856262	61856263	rs35225048	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q22.2	NR	rs35225048-?	NR	7E-10				Illumina [up to 5582932] (imputed)	N
1056	chr15	61856262	61856263	rs35225048	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q22.2	LOC10050653	rs35225048-C	NR	4E-13		1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
1056	chr15	61856262	61856263	rs35225048	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q22.2	VPS13C	rs35225048-C	NR	8E-13		1.0695187	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1056	chr15	61863132	61863133	rs2414718	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	15q22.2	NR	rs2414718-A	0.6262	9E-10		0.06755675	[0.046-0.089] unit increase	NR [NR]	N
1056	chr15	61863132	61863133	rs2414718	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	15q22.2	Intergenic	rs2414718-?		1E-8				NR [6786993] (imputed)	N
1056	chr15	61863132	61863133	rs2414718	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q22.2	ENSG00000259616	rs2414718-?	NR	2E-9		0.012107124	[0.0082-0.0161] unit decrease	NR [7306098]	N
1056	chr15	61863132	61863133	rs2414718	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q22.2	LOC10050653	rs2414718-A	NR	2E-10	(EA)	1.072	[1.05-1.09]	Illumina [6627481] (imputed)	N
1056	chr15	61864075	61864076	rs17270962	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs17270962-?	NR	1E-9				NR [2625067]	N
1056	chr15	61865853	61865854	rs142377245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs142377245-A	0.01916	6E-9	(TNC)	0.05355	NR unit increase	Illumina [1671387] (imputed)	N
1057	chr15	61870942	61870943	rs12592967	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q22.2	intergenic	rs12592967-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1057	chr15	61870942	61870943	rs12592967	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	15q22.2	intergenic	rs12592967-?	NR	3E-7		1.1	[NR]	Affymetrix [745006]	N
1057	chr15	61913053	61913054	rs7166435	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q22.2	NR	rs7166435-?		3E-6				Illumina [4322238] (imputed)	N
1057	chr15	61947279	61947280	rs12438742	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	15q22.2	LOC107984782, RORA, VPS13C	rs12438742-C	NR	3E-15		0.0566	unit decrease	Illumina [15409056] (imputed)	N
1057	chr15	61947279	61947280	rs12438742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q22.2	NR	rs12438742-G	0.570004	3E-8		0.00693066	[0.0045-0.0094] unit increase	Affymetrix [16585854] (imputed)	N
1057	chr15	61947279	61947280	rs12438742	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q22.2	NR	rs12438742-G	0.570004	2E-7		0.00765231	[0.0048-0.0105] unit increase	Affymetrix [16585866] (imputed)	N
1057	chr15	61947693	61947694	rs10851698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q22.2		rs10851698-T	NR	5E-10		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1057	chr15	61947693	61947694	rs10851698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q22.2	NR	rs10851698-T	NR	1E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1057	chr15	61947693	61947694	rs10851698	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q22.2	intergenic	rs10851698-?	NR	2E-8		0.0168	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1057	chr15	61948434	61948435	rs2245477	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q22.2	VPS13C	rs2245477-C	0.631952	8E-9		0.0114227	[0.0075-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1057	chr15	61948434	61948435	rs2245477	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q22.2	RP11-507B12.1	rs2245477-A	0.4047	1E-8		0.0136	[0.0089-0.0183] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1057	chr15	61951234	61951235	rs4775427	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	15q22.2	VPS13C	rs4775427-?	NR	8E-18		0.1099	[0.085-0.135] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1057	chr15	61951234	61951235	rs4775427	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	15q22.2	VPS13C	rs4775427-C	0.432	4E-18		0.111	[0.086-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1057	chr15	61951234	61951235	rs4775427	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q22.2	RORA, LINC02349	rs4775427-C	0.4331	3E-11		0.092	[0.064-0.12] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1057	chr15	61952500	61952501	rs2245899	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	15q22.2	VPS13C	rs2245899-G	NR	5E-9		1.08	1.05-1.11	Affymetrix [at least 665500] (imputed)	N
1057	chr15	61957235	61957236	rs3848125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q22.2	NR	rs3848125-A	0.576804	2E-11		0.00538037	[0.0037-0.007] unit increase	Affymetrix [16582909] (imputed)	N
1057	chr15	61957235	61957236	rs3848125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q22.2	NR	rs3848125-A	0.576804	2E-9		0.00571984	[0.0039-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
1057	chr15	61957959	61957960	rs2249193	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q22.2	RORA, LINC02349	rs2249193-C	0.5755	1E-11		0.0928	[0.065-0.121] unit increase	Affymetrix [~ 11900000] (imputed)	N
1057	chr15	61958028	61958029	rs2249195	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	15q22.2	NR	rs2249195-A		3E-15		0.12	[0.1-0.14] unit increase	NR [NR]	N
1057	chr15	61958028	61958029	rs2249195	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	15q22.2	VPS13C	rs2249195-A	0.57	7E-18				Affymetrix, Illumina [8002429] (imputed)	N
1057	chr15	61960301	61960302	rs12440800	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q22.2	VPS13C	rs12440800-A	0.744849	2E-12		0.0161656	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1057	chr15	61967902	61967903	rs11071625	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	15q22.2	LOC107984782	rs11071625-?	NR	5E-6		4.562	[NR] z score decrease	Illumina [6737359] (imputed)	N
1057	chr15	61967902	61967903	rs11071625	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	15q22.2	LOC107984782	rs11071625-?	NR	5E-6		4.562	z score decrease	Illumina [6737359] (imputed)	N
1057	chr15	61994133	61994134	rs2414739	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	15q22.2	VPS13C	rs2414739-A	0.734	4E-14		1.098901	[1.08-1.12]	Illumina [11933700] (imputed)	N
1057	chr15	61994133	61994134	rs2414739	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	15q22.2	VPS13C	rs2414739-A	0.734	1E-11		1.113	[1.08-1.14]	Illumina [7893274] (imputed)	N
1058	chr15	61997384	61997385	rs2251086	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	15q22.2	VPS13C	rs2251086-T	0.1417	6E-18		0.1186	[0.092-0.145] unit decrease	NR [7784415] (imputed)	N
1058	chr15	62001131	62001132	rs10519131	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	15q22.2	intergenic	rs10519131-?	NR	1E-6		1.22	[NR]	Illumina [2500000] (imputed)	N
1058	chr15	62004795	62004796	rs3889108	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	15q22.2	RP11-162I7, 1	rs3889108-T		7E-9		0.1322	[0.088-0.177] unit decrease	Illumina [NR]	N
1058	chr15	62017104	62017105	rs8028149	26942285	Sobota RS	2016-03-01	Am J Hum Genet	A Locus at 5q33.3 Confers Resistance to Tuberculosis in Highly Susceptible Individuals.	Tuberculosis susceptibility in HIV infection	267 Sub-Saharan African cases, 314 Sub-Saharan African controls	NA	15q22.2	VPS13C	rs8028149-C	0.416	2E-6		0.509	[0.385-0.672]	Illumina [NR] (imputed)	N
1058	chr15	62106283	62106284	rs1559674	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	15q22.2	NR	rs1559674-?	NR	3E-6	(AA)	1.4084507	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1058	chr15	62122538	62122539	rs12438629	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q22.2	NA	rs12438629-C	0.9678	2E-11		0.0347	[0.025-0.045] unit increase	NR [~ 27400000] (imputed)	N
1059	chr15	62134331	62134332	rs17303831	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q22.2	NR	rs17303831-T	NR	9E-6		0.031	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1059	chr15	62134331	62134332	rs17303831	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q22.2	RORA, VPS13C	rs17303831-C	0.04	4E-10		0.024	[0.016-0.032] unit decrease	Illumina [6108953] (imputed)	N
1059	chr15	62184635	62184636	rs13379492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.2		rs13379492-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1059	chr15	62189431	62189432	rs12901247	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q22.2	VPS13C	rs12901247-?		4E-6				Illumina [4322238] (imputed)	N
1059	chr15	62220771	62220772	rs148713408	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	15q22.2	VPS13C	rs148713408-?	NR	2E-7		0.339	[0.212-0.466] unit increase	Illumina [12039487] (imputed)	N
1059	chr15	62223302	62223303	rs78071599	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.2	NR	rs78071599-G	0.01394	2E-8	(AKR1C2)	0.9246	NR unit increase	Illumina [1671387] (imputed)	N
1059	chr15	62226687	62226688	rs8030161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	15q22.2		rs8030161-C	0.214397	3E-14		0.0250792	[0.019-0.032] unit decrease	Illumina [13479924] (imputed)	N
1059	chr15	62232379	62232380	rs2042608	29743933	Wu B	2018-03-18	Comput Math Methods Med	Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.	Glycemic traits (multi-trait analysis)	5,947 European ancestry individuals	NA	15q22.2	NR	rs2042608-?	NR	3E-9				NR [~ 2500000] (imputed)	N
1060	chr15	62274939	62274940	rs933807	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q22.2	NR	rs933807-?	NR	8E-11		0.14353	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1060	chr15	62274939	62274940	rs933807	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q22.2	NR	rs933807-?	NR	6E-6	(male)	0.15759	[0.089-0.226] unit decrease	Affymetrix [7794483] (imputed)	N
1060	chr15	62274939	62274940	rs933807	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q22.2	NR	rs933807-?	NR	2E-7	(female)	0.12586	[0.079-0.173] unit decrease	Affymetrix [7794483] (imputed)	N
1060	chr15	62287527	62287528	rs8034216	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q22.2	NR	rs8034216-C	0.56446	2E-10		0.0132024	[0.0092-0.0172] unit decrease	NR [NR]	N
1060	chr15	62291080	62291081	rs112732813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q22.2	NR	rs112732813-C	NR	2E-9		0.0393	[0.027-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1060	chr15	62312839	62312840	rs4143844	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q22.2	NR	rs4143844-?	NR	4E-6		1.4298	[NR]	Affymetrix [722112]	N
1060	chr15	62319431	62319432	rs72749754	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q22.2	VPS13C	rs72749754-C	0.213	8E-10	(Japanese)	0.026	[0.018-0.034] unit decrease	Illumina [6108953] (imputed)	N
1060	chr15	62329450	62329451	rs66808118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	15q22.2		rs66808118-A	NR	1E-12		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1060	chr15	62330632	62330633	rs11634163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q22.2		rs11634163-T	NR	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1060	chr15	62330632	62330633	rs11634163	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	15q22.2	VPS13C	rs11634163-T	0.4213	3E-14		0.0584	[0.043-0.073] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1060	chr15	62332979	62332980	rs17271305	20081857	Saxena R	2010-01-17	Nat Genet	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	15q22.2	VPS13C	rs17271305-G	NR	1E-7		0.06	[0.04-0.08 mmol/L increase	Affymetrix, Illumina [NR]	N
1060	chr15	62338796	62338797	rs1436958	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q22.2	NR	rs1436958-G	0.57353197705803	9E-6	(IGP2)	0.1389	[0.078-0.2] unit increase	Illumina [~ 2500000] (imputed)	N
1060	chr15	62343331	62343332	rs35057371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q22.2		rs35057371-C	NR	2E-13		0.0259	[0.019-0.033] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1060	chr15	62347884	62347885	rs17271340	29743933	Wu B	2018-03-18	Comput Math Methods Med	Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.	Glycemic traits (multi-trait analysis)	5,947 European ancestry individuals	NA	15q22.2	NR	rs17271340-?	NR	9E-10				NR [~ 2500000] (imputed)	N
1060	chr15	62356180	62356181	rs12440611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	15q22.2		rs12440611-T	0.215513	1E-9		0.0236379	[0.016-0.031] unit decrease	Illumina [13479178] (imputed)	N
1060	chr15	62360121	62360122	rs199710631	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	15q22.2		rs199710631-?	NR	3E-10		0.187236	[0.13-0.25] unit decrease	NR [9800000] (imputed)	N
1060	chr15	62360173	62360174	rs761653091	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	15q22.2		rs761653091-?	NR	1E-29		0.194383	[0.16-0.23] unit decrease	NR [9800000] (imputed)	N
1060	chr15	62365464	62365465	rs72749770	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q22.2	NR	rs72749770-C	0.547299	9E-10		0.011851	[0.0081-0.0156] unit decrease	Affymetrix [15000001]	N
1060	chr15	62365464	62365465	rs72749770	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q22.2	C2CD4A	rs72749770-C	0.547779	2E-9		0.0125236	[0.0084-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1060	chr15	62367012	62367013	rs72749772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q22.2		rs72749772-C	NR	1E-18		0.0269	[0.021-0.033] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1060	chr15	62367012	62367013	rs72749772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.2		rs72749772-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1060	chr15	62367581	62367582	rs72749773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.2	NR	rs72749773-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1060	chr15	62373112	62373113	rs4143842	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q22.2	NR	rs4143842-?		1E-6				Illumina [4322238] (imputed)	N
1060	chr15	62373458	62373459	rs7162536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q22.2		rs7162536-G	NR	4E-29		0.0145	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1060	chr15	62378135	62378136	rs731820	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q22.2	C2CD4A, C2CD4B	rs731820-?	NR	2E-13		0.021538991	[0.016-0.027] unit decrease	Illumina [27896057] (imputed)	N
1060	chr15	62380258	62380259	rs7178424	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q22.2	C2CD4A	rs7178424-T	0.47	6E-9		0.021	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1060	chr15	62381015	62381016	rs17271431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q22.2		rs17271431-T	0.38591	2E-11		0.0138988	[0.0098-0.018] unit decrease	Illumina [13479295] (imputed)	N
1060	chr15	62381412	62381413	rs17205463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q22.2	intergenic	rs17205463-T	0.4477	4E-43		0.0263	[0.023-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1060	chr15	62381412	62381413	rs17205463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs17205463-?	NR	2E-35				NR [~ 8900000] (imputed)	N
1060	chr15	62383154	62383155	rs4502156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q22.2	NR	rs4502156-C	NR	3E-34		0.0294	[0.025-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1060	chr15	62383154	62383155	rs4502156	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	15q22.2	C2CD4A	rs4502156-C	0.435857045480673	2E-8		0.0411	[0.027-0.055] unit decrease	NR [5035015] (imputed)	N
1060	chr15	62383154	62383155	rs4502156	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	15q22.2	C2CD4A	rs4502156-T	0.518359419543052	2E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1060	chr15	62383154	62383155	rs4502156	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	15q22.2	C2CD4B, C2CD4A, VPS13C	rs4502156-T	0.58	4E-20				Affymetrix, Illumina [~ 2500000] (imputed)	N
1060	chr15	62384341	62384342	rs12907605	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q22.2	NR	rs12907605-?	NR	2E-8				Illumina [7760689] (imputed)	N
1060	chr15	62386794	62386795	rs77820034	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q22.2	C2CD4A	rs77820034-C	0.024	8E-7	(Conditioned)			Illumina [12557761] (imputed)	N
1061	chr15	62391607	62391608	rs7163757	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	15q22.2	C2CD4A	rs7163757-T	0.4511	3E-36		0.0217	[0.019-0.025] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1061	chr15	62391607	62391608	rs7163757	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q22.2	NR	rs7163757-C	0.5741	2E-18		0.0405	[0.031-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1061	chr15	62391607	62391608	rs7163757	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q22.2	NR	rs7163757-C	0.5556	6E-30		0.043	[0.036-0.05] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1061	chr15	62391607	62391608	rs7163757	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	15q22.2	C2CD4A	rs7163757-C	0.56	4E-6		1.06	[1.02-1.11]	Affymetrix, Illumina [2500000] (imputed)	N
1061	chr15	62394263	62394264	rs8037894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q22.2		rs8037894-C	NR	5E-19		0.0677	[0.053-0.083] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1061	chr15	62394263	62394264	rs8037894	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q22.2	NR	rs8037894-G	0.5764	7E-18		0.0752	[0.058-0.092] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1061	chr15	62394263	62394264	rs8037894	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q22.2	C2CD4A, B	rs8037894-G	0.586	7E-33		1.08	[1.07-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1061	chr15	62394263	62394264	rs8037894	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q22.2	C2CD4A	rs8037894-G	0.58	2E-17		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
1061	chr15	62394263	62394264	rs8037894	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q22.2	C2CD4A, C2CD4B	rs8037894-G	0.5663	3E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1061	chr15	62395223	62395224	rs7161785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q22.2		rs7161785-C	0.42783933	1E-18		0.08189992	[0.064-0.1] unit decrease	Illumina [13429769] (imputed)	N
1061	chr15	62395223	62395224	rs7161785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q22.2		rs7161785-C	0.422964235	2E-18		0.08737735	[0.068-0.107] unit decrease	Illumina [13134967] (imputed)	N
1061	chr15	62396188	62396189	rs7167878	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q22.2		rs7167878-A	0.427927219	1E-22		0.9215823	[0.90665858-0.936751661]	Illumina [8919992] (imputed)	N
1061	chr15	62396388	62396389	rs7172432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q22.2		rs7172432-G	NR	8E-22		0.0604	[0.048-0.073] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1061	chr15	62396388	62396389	rs7172432	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q22.2	C2CD4A	rs7172432-G	0.4115	5E-9		0.057	[0.037-0.077] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1061	chr15	62396388	62396389	rs7172432	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	15q22.2	C2CD4B, C2CD4A	rs7172432-A	0.57	1E-6		1.11	[1.07-1.16]	Illumina [6209637] (imputed)	N
1061	chr15	62396388	62396389	rs7172432	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	15q22.2	VPS13C, C2CD4A, C2CD4B	rs7172432-A	0.446	7E-18		0.042	[0.032-0.052] unit increase	Illumina [242071]	N
1061	chr15	62396388	62396389	rs7172432	20818381	Yamauchi T	2010-09-05	Nat Genet	A genome-wide association study in the Japanese population identifies susceptibility loci for type 2 diabetes at UBE2E2 and C2CD4A-C2CD4B.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	10,692 Japanese ancestry cases, 9,597 Japanese ancestry controls, 6,980 European ancestry cases, 8,615 European ancestry controls	15q22.2	C2CD4B, C2CD4A	rs7172432-?	0.58	9E-14		1.11	[1.08-1.14]	Illumina [459359]	N
1061	chr15	62396941	62396942	rs7173964	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	15q22.2	VPS13C	rs7173964-A	0.436	6E-12		5.46E-5	[-0.00128-0.00139] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1061	chr15	62396941	62396942	rs7173964	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	15q22.2	VPS13C	rs7173964-A	0.4437	1E-10		0.0203	[0.014-0.026] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1061	chr15	62399092	62399093	rs11856307	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	15q22.2		rs11856307-A	0.4981	3E-9		0.0389	[0.026-0.052] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1061	chr15	62399092	62399093	rs11856307	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	15q22.2		rs11856307-A	0.4115	6E-6		0.0467	[0.027-0.067] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1061	chr15	62399092	62399093	rs11856307	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	15q22.2	C2CD4A	rs11856307-?	NR	2E-23				NR [3144808] (imputed)	N
1061	chr15	62404381	62404382	rs1436955	20862305	Shu XO	2010-09-16	PLoS Genet	Identification of new genetic risk variants for type 2 diabetes.	Type 2 diabetes	1,019 Chinese ancestry cases, 1,710 Chinese ancestry controls	2,591 European ancestry cases, 3,052 European ancestry controls, 6,184 East Asian cases, 9,853 East Asian controls	15q22.2	C2CD4B	rs1436955-C	0.73	7E-7		1.13	[1.08-1.19]	Affymetrix [590887]	N
1061	chr15	62409069	62409070	rs8032416	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	15q22.2	C2CD4A/B	rs8032416-G	NR	5E-9	(Japanese)	1.09767	[1.06399-1.12331]	Illumina [7521072] (imputed)	N
1061	chr15	62414013	62414014	rs1436953	21799836	Cui B	2011-07-22	PLoS One	A genome-wide association study confirms previously reported loci for type 2 diabetes in Han Chinese.	Type 2 diabetes	793 Han Chinese ancestry cases, 806 Han Chinese ancestry controls	4,445 Han Chinese ancestry cases, 4,458 Han Chinese ancestry controls	15q22.2	C2CD4B, C2CD4A	rs1436953-G	0.64	8E-6		1.14	[NR]	Illumina [474515]	N
1061	chr15	62419881	62419882	rs11635791	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q22.2	NR	rs11635791-A	NR	2E-10		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1061	chr15	62433961	62433962	rs11071657	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	15q22.2	FAM148B, VPS13C, C2CD4A, C2CD4B	rs11071657-A	0.629656	2E-6		0.018842	[0.011-0.027] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1061	chr15	62433961	62433962	rs11071657	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	15q22.2	FAM148B, VPS13C, C2CD4A, C2CD4B	rs11071657-A	0.629656	9E-8		0.014928	[0.0095-0.0204] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1061	chr15	62433961	62433962	rs11071657	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	15q22.2	C2CD4B	rs11071657-A	0.63	4E-8		0.008	[0.0021-0.0139] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1061	chr15	62435155	62435156	rs12440695	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q22.2	NR	rs12440695-C	0.39	2E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix [2446094] (imputed)	N
1061	chr15	62435155	62435156	rs12440695	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q22.2	NR	rs12440695-C	0.39	5E-8				Affymetrix [2446094] (imputed)	N
1061	chr15	62435155	62435156	rs12440695	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q22.2	NA	rs12440695-T	0.6151	4E-9		0.0103	[0.0068-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
1061	chr15	62453035	62453036	rs77897527	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	15q22.2	Intergenic	rs77897527-?	NR	6E-6		1.19	[1.10-1.28]	Affymetrix, Illumina [39235000] (imputed)	N
1061	chr15	62455018	62455019	rs6494314	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	15q22.2	C2CD4B	rs6494314-T	0.17	1E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1061	chr15	62455018	62455019	rs6494314	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	15q22.2	C2CD4B	rs6494314-T	0.17	1E-7	(EA)	0.0178	[0.011-0.024] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
1061	chr15	62487527	62487528	rs2030998	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	15q22.2	intergenic	rs2030998-G	0.13	7E-6	(female)	0.276	[0.16-0.4] unit decrease	Illumina [6380737] (imputed)	N
1063	chr15	62687338	62687339	rs2456930	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	15q22.2	intergenic	rs2456930-G	0.38	3E-7		3843.9	[NR] unit increase	Illumina [546314]	N
1063	chr15	62705140	62705141	rs2471032	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.2	MIR6085	rs2471032-C	0.869799	8E-10		0.0170094	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
1063	chr15	62705140	62705141	rs2471032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.2		rs2471032-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1063	chr15	62721767	62721768	rs4775500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q22.2	TLN2	rs4775500-T	NR	3E-8		0.0204855	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
1063	chr15	62732835	62732836	rs72753851	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q22.2	TLN2	rs72753851-C	0.7773	4E-11		0.0149	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1063	chr15	62747769	62747770	rs56259139	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.2	MIR6085	rs56259139-C	0.905829	1E-10		0.0206876	[0.014-0.027] unit increase	NR [13737936] (imputed)	N
1063	chr15	62747769	62747770	rs56259139	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.2		rs56259139-?	NR	1E-10		0.0229977	[0.016-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1063	chr15	62782247	62782248	rs435964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q22.2	TLN2	rs435964-G	0.275237	1E-35		0.031397447	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr15	62782247	62782248	rs435964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs435964-G	0.275237	7E-30		0.028768549	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62791493	62791494	rs67476890	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	15q22.2	NR	rs67476890-C		3E-6		0.1769	[0.1-0.25] SD units decrease	NR [10700000] (imputed)	N
1064	chr15	62797963	62797964	rs780142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q22.2	NR	rs780142-G	0.274035	2E-12		0.014549	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1064	chr15	62797963	62797964	rs780142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	15q22.2	TLN2	rs780142-G	0.2736	1E-15		0.03215649	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1064	chr15	62797963	62797964	rs780142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	15q22.2	TLN2	rs780142-G	0.2736	6E-14		0.03026128	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1064	chr15	62799034	62799035	rs398474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.2	TLN2	rs398474-A	0.273323	1E-19		0.026435116	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62799034	62799035	rs398474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs398474-A	0.273318	7E-19		0.025923189	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62799034	62799035	rs398474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs398474-A	0.325327	2E-13				Affymetrix, Illumina [24649327] (imputed)	N
1064	chr15	62800454	62800455	rs812957	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	15q22.2	TLN2	rs812957-G	0.2737	2E-22		0.0391755	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1064	chr15	62800454	62800455	rs812957	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	15q22.2	TLN2	rs812957-G	0.2737	2E-21		0.03818624	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1064	chr15	62806133	62806134	rs58646822	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q22.2	intergenic	rs58646822-T	0.2403	4E-14		0.2414	[0.18-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1064	chr15	62808538	62808539	rs956006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q22.2		rs956006-T	NR	1E-13		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1064	chr15	62808538	62808539	rs956006	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q22.2	MGC15885	rs956006-T	0.3309	4E-10		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1064	chr15	62808538	62808539	rs956006	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q22.2	MGC15885	rs956006-T	0.3386	1E-9		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1064	chr15	62808538	62808539	rs956006	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q22.2	intergenic	rs956006-T	0.4183	2E-8		0.1595	[0.1-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1064	chr15	62808538	62808539	rs956006	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q22.2	chr15mb62	rs956006-T	0.326301444	1E-7		0.1789	[0.11-0.25] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1064	chr15	62808538	62808539	rs956006	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q22.2	C2CD4B, MGC15885	rs956006-C		7E-8		0.207	unit increase	Affymetrix [at least 2696785] (imputed)	N
1064	chr15	62808538	62808539	rs956006	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q22.2	C2CD4B, MGC15885	rs956006-C		2E-6	(EA)	0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
1064	chr15	62808538	62808539	rs956006	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q22.2	C2CD4B, MGC15885	rs956006-C		3E-15		0.215	unit increase	Affymetrix [at least 2696785] (imputed)	N
1064	chr15	62811080	62811081	rs79199884	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	15q22.2	NR	rs79199884-A	0.9846	4E-7		1.9493	[1.19-2.7] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1064	chr15	62812654	62812655	rs1822201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q22.2	TLN2	rs1822201-G	0.462342	2E-48		0.033076875	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62825326	62825327	rs7167031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q22.2		rs7167031-T	NR	1E-9		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1064	chr15	62830703	62830704	rs990526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q22.2	TLN2	rs990526-C	0.235104	1E-10		0.016869402	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62830703	62830704	rs990526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q22.2		rs990526-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1064	chr15	62852952	62852953	rs59191668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	15q22.2	TLN2	rs59191668-G	0.4123	1E-25		0.03793851	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1064	chr15	62854084	62854085	rs2119696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q22.2	TLN2	rs2119696-C	0.41072	3E-9		0.013585151	[0.0091-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62854084	62854085	rs2119696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs2119696-C	0.41069	3E-9		0.015632767	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1064	chr15	62860106	62860107	rs2044062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.2	TLN2	rs2044062-T	0.587684	1E-9		0.016010677	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1064	chr15	62899159	62899160	rs12913538	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep depth	2,314 European ancestry individuals	NA	15q22.2	intergenic	rs12913538-A	0.37	7E-6		0.1	[0.061-0.139] unit increase	Illumina [2380486] (imputed)	N
1065	chr15	63014547	63014548	rs10775181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	15q22.2	NR	rs10775181-?	NR	5E-6		0.0801	[0.046-0.114] unit increase	Illumina [at least 560000] (imputed)	N
1065	chr15	63028153	63028154	rs117618575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs117618575-A	0.015034	3E-10		0.059669714	[0.041-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1066	chr15	63067433	63067433	rs746239049	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	15q22.2		rs746239049-?	NR	8E-12		0.8971789	[0.869650887-0.925578277]	Affymetrix, Illumina [NR] (imputed)	N
1066	chr15	63075732	63075733	rs72757744	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MILR1	5,353 Icelandic ancestry individuals	NA	15q22.2		rs72757744-A	0.01185	6E-12		0.111135	[0.079-0.143] unit increase	Illumina [7506463] (imputed)	N
1066	chr15	63079542	63079543	rs8041447	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	15q22.2	TLN2	rs8041447-A	0.6505	3E-10		0.02374927	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1066	chr15	63080441	63080442	rs4383083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.2		rs4383083-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q22.2	TLN2	rs35997243-C	0.01444	2E-25		0.09850402	[0.08-0.117] unit increase	Affymetrix [93095623] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.2	TLN2	rs35997243-C	0.014419	6E-17		0.078925095	[0.06-0.097] unit increase	Affymetrix [93095623] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs35997243-C	0.014423	6E-17		0.078937784	[0.06-0.097] unit increase	Affymetrix [93095623] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	15q22.2	TLN2	rs35997243-C	0.0178	9E-6		0.1111	[0.062-0.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	15q22.2	TLN2	rs35997243-C	0.0146	8E-20		0.1347317	[0.11-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	15q22.2	TLN2	rs35997243-C	0.0146	4E-15		0.1170721	[0.088-0.146] unit increase	Affymetrix [~ 2500000] (imputed)	N
1066	chr15	63092899	63092900	rs35997243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	15q22.2	TLN2	rs35997243-C	0.0146	4E-15		0.1173148	[0.088-0.147] unit increase	Affymetrix [~ 2500000] (imputed)	N
1066	chr15	63111738	63111739	rs3816988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q22.2	TLN2	rs3816988-C	0.176314	3E-11		0.019664839	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr15	63111738	63111739	rs3816988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.2	TLN2	rs3816988-C	0.176416	1E-9		0.01773529	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr15	63111738	63111739	rs3816988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2	TLN2	rs3816988-C	0.176412	5E-10		0.01824667	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr15	63126380	63126387	rs373810425	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	15q22.2	NR	rs373810425-T		8E-9		0.182	[NR] unit decrease	Illumina [NR]	N
1067	chr15	63256543	63256544	rs12437986	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	15q22.2	TPM1	rs12437986-A	0.18	8E-6		3.79	[2.07-6.94]	Illumina [2668805]	N
1067	chr15	63290644	63290645	rs12595433	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q22.2	LOC100287243	rs12595433-A	0.464	5E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1067	chr15	63297718	63297719	rs28514429	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	15q22.2	NR	rs28514429-A	0.4783	2E-7	(Lateral Occipital)	13.962941	[8.67-19.25] unit decrease	Affymetrix, Illumina [NR]	N
1068	chr15	63312207	63312208	rs16946284	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q22.2	LOC100287243	rs16946284-?		9E-6				Illumina [4322238] (imputed)	N
1068	chr15	63312631	63312632	rs1873147	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	15q22.2		rs1873147-?		4E-7				Illumina [NR]	N
1068	chr15	63312631	63312632	rs1873147	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	15q22.2	TPM1	rs1873147-C	NR	8E-7	(Meta-All, NSCL/P)	1.431	[1.23-1.666]	NR [497084]	N
1068	chr15	63312694	63312695	rs7179658	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q22.2	NR	rs7179658-?	NR	7E-6		1.6	[1.52-1.69]	Illumina [539000] (imputed)	N
1068	chr15	63328961	63328962	rs76162994	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q22.2	NR	rs76162994-A	0.845697	4E-8		0.0146184	[0.0094-0.0198] unit increase	Affymetrix [15000001]	N
1068	chr15	63329128	63329128	rs34806615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.2		rs34806615-AC	0.186485	2E-9		0.017264402	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1068	chr15	63329600	63329601	rs62013179	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q22.2	NR	rs62013179-T	0.456	7E-17				NR [9056863] (imputed)	N
1068	chr15	63329874	63329875	rs11071719	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q22.2		rs11071719-C	0.46	1E-20		9.29	z score increase	Affymetrix [9061022] (imputed)	N
1068	chr15	63329874	63329875	rs11071719	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q22.2		rs11071719-C	0.46	9E-14		7.46	z score increase	Affymetrix [9061022] (imputed)	N
1068	chr15	63333618	63333619	rs3809565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q22.2	TPM1	rs3809565-G	0.706788	3E-10		0.015602999	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63333723	63333724	rs3809566	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	15q22.2	TPM1	rs3809566-G	NR	4E-10		2.443	[1.68-3.21] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1068	chr15	63341237	63341238	rs66793829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.2	RP11-244F12.3	rs66793829-C	0.168171	5E-12		0.020801337	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1068	chr15	63341237	63341238	rs66793829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q22.2	RP11-244F12.3	rs66793829-C	0.167477	4E-13		0.022151474	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q22.2		rs11071720-C	NR	2E-52		0.0315	[0.027-0.036] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	15q22.2		rs11071720-T	0.299	3E-18				Affymetrix [10369434] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q22.2		rs11071720-T	0.299	8E-33				Affymetrix [10369434] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.2	TPM1	rs11071720-C	0.701427	1E-79		0.046843164	[0.042-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q22.2	TPM1	rs11071720-C	0.701424	7E-61		0.04101826	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q22.2	TPM1	rs11071720-C	0.701397	4E-112		0.0560444	[0.051-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs11071720-C	0.617007	2E-100				Affymetrix, Illumina [24588908] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q22.2	NR	rs11071720-C	0.697008	2E-90		0.040482	[0.037-0.044] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs11071720-T	0.311382	7E-170				Affymetrix, Illumina [17210439] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q22.2	NR	rs11071720-T	0.299828	1E-165		0.057779	[0.054-0.062] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	15q22.2	TPM1	rs11071720-C	0.7001	7E-34		0.0476788	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q22.2	TPM1	rs11071720-C	0.6998	1E-35		0.04958157	[0.042-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	15q22.2	TPM1	rs11071720-C	0.7	4E-53		0.0606667	[0.053-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1068	chr15	63341995	63341996	rs11071720	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	15q22.2	TPM1	rs11071720-T	NR	2E-8		0.01	[0.007-0.015] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1068	chr15	63344166	63344167	rs55719615	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q22.2		rs55719615-A	0.695891	1E-8		0.0251163	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1068	chr15	63345525	63345526	rs6494387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q22.2		rs6494387-A	0.328207	4E-8		0.0235911	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1068	chr15	63346375	63346376	rs117267308	27402877	Hill-Burns EM	2016-07-11	Hum Mol Genet	Identification of genetic modifiers of age-at-onset for familial Parkinson's disease.	Parkinson's disease (familial, age at onset)	431 European ancestry cases	737 European ancestry cases	15q22.2	TPM1	rs117267308-A	0.012	9E-11		4.55	[2.88-7.20]	Illumina [7200000] (imputed)	N
1068	chr15	63347362	63347363	rs4238370	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	15q22.2		rs4238370-T	0.195919	9E-9		0.0291248	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1068	chr15	63347362	63347363	rs4238370	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	15q22.2		rs4238370-T	0.195919	2E-8		0.0284402	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1068	chr15	63347996	63347997	rs16953467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q22.2		rs16953467-G	NR	2E-14		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1068	chr15	63348086	63348087	rs16953475	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q22.2	TPM1	rs16953475-A	0.465898	4E-24		0.0199116	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1068	chr15	63348593	63348594	rs7166624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.2		rs7166624-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1068	chr15	63352091	63352092	rs3803501	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q22.2	TPM1	rs3803501-G	0.431057	3E-20		0.0177746	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1068	chr15	63355091	63355092	rs12442826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q22.2		rs12442826-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1068	chr15	63355274	63355275	rs11071723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q22.2	NR	rs11071723-T	0.802884	7E-12		0.015898	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1068	chr15	63359093	63359094	rs34798274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.2	TPM1	rs34798274-C	0.802738	4E-9		0.016358672	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63360563	63360564	rs2729827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.2	NR	rs2729827-A	0.836265	6E-10				Affymetrix, Illumina [24653286] (imputed)	N
1068	chr15	63360846	63360847	rs1972041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.2		rs1972041-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1068	chr15	63363489	63363490	rs138843544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q22.2	TPM1	rs138843544-C	0.033988	1E-10		0.043145567	[0.03-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1068	chr15	63363489	63363490	rs138843544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q22.2	TPM1	rs138843544-C	0.033986	4E-18		0.058146387	[0.045-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1068	chr15	63366281	63366282	rs2937859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q22.2	NR	rs2937859-A	0.800454	2E-12		0.016279	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1068	chr15	63366510	63366510	rs56867239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q22.2		rs56867239-G	0.809742	1E-8		0.0287244	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1068	chr15	63366510	63366510	rs56867239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	15q22.2		rs56867239-G	0.809742	2E-8		0.0289474	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1068	chr15	63366510	63366510	rs56867239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	15q22.2		rs56867239-G	0.809742	4E-8		0.0283553	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1068	chr15	63374126	63374127	rs2652806	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q22.2	TPM1	rs2652806-C	0.331768	1E-13		0.0158797	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1068	chr15	63374126	63374127	rs2652806	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q22.2	TPM1	rs2652806-T	0.681	3E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1068	chr15	63374824	63374825	rs1027647	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	15q22.2	TPM1	rs1027647-A		2E-6		0.0698	[0.041-0.099] unit increase	Illumina [NR]	N
1068	chr15	63374824	63374825	rs1027647	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q22.2	TPM1, LACTB	rs1027647-C		3E-9		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
1068	chr15	63379591	63379592	rs11857703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q22.2	NR	rs11857703-A	NR	1E-11		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1068	chr15	63379591	63379592	rs11857703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q22.2	NR	rs11857703-A	NR	2E-13		0.0184	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1068	chr15	63379591	63379592	rs11857703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q22.2	NR	rs11857703-A	NR	1E-18		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1068	chr15	63379591	63379592	rs11857703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q22.2	NR	rs11857703-A	NR	5E-13		0.0181	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1068	chr15	63379591	63379592	rs11857703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q22.2	NR	rs11857703-A	NR	2E-13		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1068	chr15	63379642	63379643	rs8038648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q22.2		rs8038648-T	0.785881	8E-9		0.0281408	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1068	chr15	63379642	63379643	rs8038648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q22.2		rs8038648-T	0.785881	2E-9		0.029851	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1068	chr15	63379642	63379643	rs8038648	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q22.2		rs8038648-T	0.785881	4E-10		0.030849	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1068	chr15	63391361	63391362	rs76127683	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q22.2	TPM1, LACTB	rs76127683-C	NR	5E-9				Affymetrix, Illumina [NR] (imputed)	N
1068	chr15	63391361	63391362	rs76127683	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	15q22.2	TPM1, LACTB	rs76127683-C	NR	4E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1068	chr15	63391361	63391362	rs76127683	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q22.2	TPM1, LACTB	rs76127683-C	NR	2E-11				Affymetrix, Illumina [NR] (imputed)	N
1068	chr15	63391361	63391362	rs76127683	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	15q22.2	TPM1, LACTB	rs76127683-C	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1068	chr15	63391361	63391362	rs76127683	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	15q22.2	TPM1, LACTB	rs76127683-C	NR	1E-6		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1068	chr15	63395427	63395428	rs55703462	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q22.2	LACTB	rs55703462-A	0.4808	3E-8	(EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
1068	chr15	63395427	63395428	rs55703462	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q22.2	RP11-69G7.1	rs55703462-A	0.5027	3E-9		0.0187	[0.013-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1068	chr15	63396866	63396867	rs2652834	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	15q22.2		rs2652834-A	0.2058	3E-6	(EA)	0.0075	[0.0044-0.0106] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1068	chr15	63396866	63396867	rs2652834	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	15q22.2	LACTB	rs2652834-A	0.21	4E-11		0.028	[NR] unit decrease	NR [NR] (imputed)	N
1068	chr15	63396866	63396867	rs2652834	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	15q22.2	LACTB	rs2652834-A	0.2	9E-9		0.39	[0.19-0.59] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1068	chr15	63400377	63400378	rs2729788	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q22.2	LACTB	rs2729788-C	0.778	8E-9		0.365	[0.24-0.49] unit increase	Affymetrix [NR] (imputed)	N
1068	chr15	63405365	63405366	rs2652813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q22.2		rs2652813-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1068	chr15	63414082	63414083	rs34317102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.2		rs34317102-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1068	chr15	63416480	63416481	rs11071733	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	15q22.2	LACTB	rs11071733-A	0.4	3E-19	(succinylcarnitine (C4-DC))	0.14	[0.11-0.17] unit increase	Illumina [7750367] (imputed)	N
1068	chr15	63421459	63421459	rs11415795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q22.2		rs11415795-TA	NR	8E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1068	chr15	63422771	63422772	rs2652822	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	15q22.2	LACTB, RPS27L	rs2652822-?	NR	1E-21	(succinylcarnitine)	0.04431	[NR] unit decrease	Affymetrix [655658]	N
1068	chr15	63422771	63422772	rs2652822	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	15q22.2	LACTB	rs2652822-C	0.467	7E-27	(succinylcarnitine)	0.085	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1068	chr15	63423738	63423739	rs1472631	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q22.2	LACTB	rs1472631-A	0.49	2E-88	(succinylcarnitine)	0.037	[0.033-0.041] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1068	chr15	63429085	63429086	rs1126308	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q22.2	LACTB	rs1126308-A	0.692362	5E-63	(succinylcarnitine (C4-DC))	0.414	[0.37-0.46] unit increase	Illumina [13039987] (imputed)	N
1068	chr15	63433765	63433766	rs2729835	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q22.2	LACTB	rs2729835-G	0.407539	4E-56	(succinylcarnitine (C4-DC))	0.352	[0.31-0.4] unit increase	Illumina [13039987] (imputed)	N
1068	chr15	63433765	63433766	rs2729835	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	15q22.2	NR	rs2729835-A	0.6788	2E-6	(EA)	0.249	mmHg decrease	Illumina [242296]	N
1069	chr15	63441779	63441780	rs113551946	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	15q22.2	NR	rs113551946-?		9E-7		1.67	[1.36-2.05]	Illumina [539473] (imputed)	N
1069	chr15	63467886	63467887	rs17828380	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	15q22.2	RAB8B	rs17828380-C	0.11	5E-6	(Age 8)	0.18	[0.1-0.26] unit increase	Illumina [2293137] (imputed)	N
1069	chr15	63483201	63483202	rs1039444	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	15q22.2		rs1039444-T	0.88	6E-6		0.13	[0.071-0.189] unit increase	Illumina [5305352] (imputed)	N
1069	chr15	63512650	63512650	rs11382862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q22.2		rs11382862-CT	NR	1E-17		0.0167	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1069	chr15	63540571	63540572	rs1986112	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q22.2	NR	rs1986112-A	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1069	chr15	63553993	63553994	rs1017545	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	15q22.2	RAB8B	rs1017545-?	NR	5E-15	(succinylcarnitine)	0.03716	[NR] unit increase	Affymetrix [655658]	N
1069	chr15	63568094	63568095	rs76539602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.2		rs76539602-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1069	chr15	63569901	63569902	rs117618017	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	15q22.2		rs117618017-?	NR	7E-12				Illumina [NR] (imputed)	N
1069	chr15	63569901	63569902	rs117618017	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	15q22.2	APH1B	rs117618017-T	NR	3E-7		5.148	NR z-score increase	Affymetrix [10847151] (imputed)	N
1069	chr15	63569901	63569902	rs117618017	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	15q22.2	APH1B	rs117618017-T	0.132	3E-8		5.52	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1070	chr15	63571233	63571234	rs7162310	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q22.2	NR	rs7162310-T		1E-15		0.11	[0.09-0.13] unit increase	NR [NR]	N
1070	chr15	63571233	63571234	rs7162310	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q22.2	TPM1, LACTB, RPS27L, RAB8B, APH1B, CA12	rs7162310-?		6E-36				Affymetrix, Illumina [NR] (imputed)	N
1070	chr15	63571233	63571234	rs7162310	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	15q22.2	APH1B	rs7162310-?	NR	2E-11		1.06	[1.04-1.08]	Illumina [13762925] (imputed)	N
1070	chr15	63574640	63574641	rs12898755	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q22.2	APH1B	rs12898755-A	0.2453	5E-14		7.533	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1070	chr15	63574640	63574641	rs12898755	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	15q22.2	NR	rs12898755-A	0.2177	6E-10		0.0533	[0.036-0.07] unit increase	Illumina [~ 10600000] (imputed)	N
1070	chr15	63580154	63580155	rs11071738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q22.2	APH1B	rs11071738-T	0.5726	8E-21		0.0025	[0.0019-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1070	chr15	63580154	63580155	rs11071738	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q22.2	APH1B	rs11071738-T	0.5307	7E-18		0.0025	[0.0019-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1070	chr15	63598429	63598430	rs745338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q22.2	NR	rs745338-G	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1070	chr15	63605953	63605954	rs12708477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q22.2	NR	rs12708477-C	NR	3E-9		0.017	[0.011-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1070	chr15	63605953	63605954	rs12708477	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q22.2	NR	rs12708477-A	0.23	3E-11		0.0145	[0.01-0.019] unit increase	NR [NR]	N
1070	chr15	63627609	63627610	rs138082291	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q22.2		rs138082291-T	0.980059	3E-8		0.0813603	[0.053-0.11] unit decrease	NR [11722792] (imputed)	N
1070	chr15	63634404	63634405	rs1075456	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q22.2	LACTB	rs1075456-G	0.6601	3E-9		5.929	NR z score decrease	Illumina [26237160] (imputed)	N
1070	chr15	63639415	63639416	rs72748935	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	15q22.2	CA12	rs72748935-T	0.46	1E-26		0.028	[0.023-0.033] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1070	chr15	63639415	63639416	rs72748935	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces	14,976 European ancestry individuals, 11,816 Hispanic/Latino individuals	NA	15q22.2	CA12	rs72748935-T	0.46	2E-8		0.052	[0.034-0.07] unit decrease	Affymetrix, Illumina [at least 8900000] (imputed)	N
1070	chr15	63639415	63639416	rs72748935	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	15q22.2	CA12	rs72748935-T	0.46	5E-21		0.052	[0.041-0.063] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1070	chr15	63649493	63649494	rs9989288	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.2	APH1B	rs9989288-?	NR	6E-7	(hydroxyproline)	0.19139518	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1070	chr15	63655326	63655327	rs12908499	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	15q22.2		rs12908499-C	NR	6E-6		1.5654	unit increase	Illumina [NR] (imputed)	N
1070	chr15	63670807	63670808	rs67357741	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	15q22.2		rs67357741-?	NR	3E-6	(MLM)	0.556851	[0.32-0.79] unit increase	Illumina [~ 9000000] (imputed)	N
1070	chr15	63681910	63681911	rs59608010	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q22.2	NR	rs59608010-?	NR	6E-6		2.59	[2.25-2.98]	Illumina [539000] (imputed)	N
1071	chr15	63719604	63719605	rs183418267	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.31	NR	rs183418267-A	0.01045	1E-8	(DDB1)	0.2345	NR unit increase	Illumina [1671387] (imputed)	N
1071	chr15	63737924	63737925	rs10519210	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	15q22.31	USP3	rs10519210-?	0.03	1E-8	(EA)	1.53	[1.05-2.24]	Affymetrix, Illumina [2478304] (imputed)	N
1071	chr15	63739478	63739478	rs35752700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.31		rs35752700-CTCA	0.464921	1E-9		0.013546607	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1071	chr15	63739478	63739478	rs35752700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q22.31	NR	rs35752700-I	0.464933	2E-10		0.013018	[0.009-0.017] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1071	chr15	63747841	63747842	rs28420376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	AC007950.1	rs28420376-G	NR	2E-8		0.016005	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63748344	63748345	rs2111691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.31	NR	rs2111691-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1071	chr15	63759393	63759393	rs71447335	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q22.31	AC007950.1	rs71447335-CT	NR	3E-8		0.0158232	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63764896	63764897	rs4284586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	AC007950.1	rs4284586-G	NR	4E-10		0.0179518	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1071	chr15	63764896	63764897	rs4284586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.31	AC007950.1	rs4284586-G	NR	4E-8		0.0157777	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
1071	chr15	63781142	63781143	rs62011281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q22.31		rs62011281-A	NR	7E-15		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1071	chr15	63781142	63781143	rs62011281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q22.31	USP3	rs62011281-A	NR	2E-8		0.0173004	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63781142	63781143	rs62011281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	USP3	rs62011281-A	NR	5E-9		0.0179116	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63781142	63781143	rs62011281	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	USP3	rs62011281-A	NR	3E-9		0.0183994	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1071	chr15	63788266	63788267	rs11636087	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	15q22.31		rs11636087-T	0.705768	2E-8		0.0249042	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1071	chr15	63788266	63788267	rs11636087	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q22.31	NR	rs11636087-T	0.705945	2E-17		0.0181098	[0.014-0.022] unit decrease	Affymetrix [15000001]	N
1071	chr15	63789478	63789479	rs56187480	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q22.31	NR	rs56187480-G	0.655443	1E-33		0.0137642	[0.011-0.016] unit increase	Affymetrix [16582621] (imputed)	N
1071	chr15	63789478	63789479	rs56187480	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q22.31	NR	rs56187480-G	0.655443	1E-25		0.0126566	[0.01-0.015] unit increase	Affymetrix [16582614] (imputed)	N
1071	chr15	63789478	63789479	rs56187480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.31		rs56187480-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1071	chr15	63789951	63789952	rs17765311	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	15q22.31	NR	rs17765311-C	0.344611	1E-13		0.01515	[0.011-0.019] unit decrease	Affymetrix [16668957] (imputed)	N
1071	chr15	63790641	63790642	rs55829990	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q22.31		rs55829990-?	NR	2E-17		0.0181927	[0.014-0.022] unit decrease	NR [6912294] (imputed)	N
1071	chr15	63790641	63790642	rs55829990	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	15q22.31		rs55829990-T	0.655996	3E-22		0.02	[0.016-0.024] unit decrease	NR [7250403] (imputed)	N
1071	chr15	63790641	63790642	rs55829990	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q22.31	NR	rs55829990-T	NR	3E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1071	chr15	63790641	63790642	rs55829990	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q22.31	NR	rs55829990-T	0.64	3E-8	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1071	chr15	63791062	63791063	rs62011285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	15q22.31		rs62011285-C	NR	2E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1071	chr15	63791062	63791063	rs62011285	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q22.31	USP3	rs62011285-T	0.65684	2E-8		0.012435	[0.0081-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
1071	chr15	63791124	63791125	rs62011286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	15q22.31		rs62011286-A	NR	3E-11		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1071	chr15	63791124	63791125	rs62011286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q22.31	NR	rs62011286-A	0.343853	4E-11		0.013362	[0.0094-0.0173] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1071	chr15	63791124	63791125	rs62011286	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q22.31	NR	rs62011286-G	0.658013	8E-12		0.0145723	[0.01-0.019] unit increase	NR [NR]	N
1071	chr15	63791124	63791125	rs62011286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs62011286-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1071	chr15	63791227	63791228	rs62011287	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q22.31	USP3	rs62011287-A	0.655865	1E-27		0.00589059	[0.0048-0.007] unit decrease	Affymetrix [13995440] (imputed)	N
1071	chr15	63791227	63791228	rs62011287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.31		rs62011287-G	0.343489	1E-19		0.021514611	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr15	63791227	63791228	rs62011287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.31		rs62011287-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1071	chr15	63792221	63792221	rs144268704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	15q22.31		rs144268704-AGGTTTT	NR	7E-26		0.0258	[0.021-0.031] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1071	chr15	63792221	63792221	rs144268704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q22.31		rs144268704-AGGTTTT	NR	1E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1071	chr15	63792256	63792257	rs56369308	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	15q22.31	USP3-AS1	rs56369308-?	NR	1E-12		0.0192	[0.014-0.024] unit increase	Affymetrix [5701386] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q22.31	USP3	rs17184382-C	NR	4E-8		0.0157142	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	USP3	rs17184382-C	NR	2E-8		0.0160738	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	USP3	rs17184382-C	NR	3E-11		0.0190996	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.31	NR	rs17184382-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.31	USP3	rs17184382-A	0.5728	2E-24		0.0191066	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.31		rs17184382-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q22.31	NR	rs17184382-A	0.5706	6E-7		0.0087	[0.0054-0.012] unit increase	NR [~ 27400000] (imputed)	N
1071	chr15	63792485	63792486	rs17184382	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.31		rs17184382-?	NR	6E-22		0.0192413	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1071	chr15	63792758	63792758	rs5813220	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	15q22.31	NR	rs5813220-GT	0.34	2E-11		1.09	NR	NR [8853336] (imputed)	N
1071	chr15	63792758	63792758	rs5813220	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q22.31	NR	rs5813220-G	0.658166	2E-70		0.0149851	[0.013-0.017] unit increase	Affymetrix [16582909] (imputed)	N
1071	chr15	63792758	63792758	rs5813220	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q22.31	NR	rs5813220-G	0.658522	1E-39		0.0163572	[0.014-0.019] unit increase	Affymetrix [16585854] (imputed)	N
1071	chr15	63792758	63792758	rs5813220	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q22.31	NR	rs5813220-G	0.658166	7E-41		0.0125505	[0.011-0.014] unit increase	Affymetrix [16582965] (imputed)	N
1071	chr15	63792758	63792758	rs5813220	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q22.31	NR	rs5813220-G	0.658522	4E-19		0.0128757	[0.0099-0.0158] unit increase	Affymetrix [16585866] (imputed)	N
1071	chr15	63793237	63793238	rs11635675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q22.31		rs11635675-G	NR	4E-23		0.0241	[0.019-0.029] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1071	chr15	63793237	63793238	rs11635675	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q22.31	USP3	rs11635675-T	0.656491	4E-31		0.0243393	[0.02-0.028] unit decrease	Affymetrix [NR] (imputed)	N
1071	chr15	63793237	63793238	rs11635675	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q22.31	USP3-AS1	rs11635675-?	NR	5E-20		0.0253	[0.02-0.03] unit increase	Affymetrix [5701386] (imputed)	N
1071	chr15	63793872	63793873	rs11636917	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q22.31	intergenic	rs11636917-T	0.6695	3E-12		0.0206	[0.015-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1071	chr15	63793935	63793936	rs11071755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.31	USP3	rs11071755-A	NR	4E-9		0.0169616	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1071	chr15	63793935	63793936	rs11071755	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	15q22.31	USP3, CA12	rs11071755-G		8E-7		0.0043	[0.0025-0.0061] unit increase	Affymetrix [13304133] (imputed)	N
1071	chr15	63795627	63795628	rs11638671	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q22.31	intergenic	rs11638671-T	0.6684	1E-19		0.0272	[0.021-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1071	chr15	63798569	63798570	rs35639661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q22.31	USP3	rs35639661-G	0.646994	9E-20		0.02151762	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr15	63798569	63798570	rs35639661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.31	USP3	rs35639661-G	0.646994	2E-23		0.02359318	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr15	63798569	63798570	rs35639661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	15q22.31	USP3	rs35639661-G	0.6466	4E-12		0.02617766	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1071	chr15	63798569	63798570	rs35639661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	15q22.31	USP3	rs35639661-G	0.6465	4E-12		0.02610743	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1071	chr15	63798569	63798570	rs35639661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	15q22.31	USP3	rs35639661-G	0.6465	2E-13		0.0278086	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1071	chr15	63800012	63800013	rs62011291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	USP3	rs62011291-G	NR	3E-8		0.0191157	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63800012	63800013	rs62011291	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q22.31	USP3	rs62011291-G	0.23	6E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1071	chr15	63802296	63802297	rs74927570	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	15q22.31		rs74927570-?	NR	3E-11		0.0233	unit decrease	NR [NR]	N
1071	chr15	63803828	63803829	rs6494407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q22.31	USP3	rs6494407-A	NR	2E-9		0.0178535	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63803828	63803829	rs6494407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	USP3	rs6494407-A	NR	8E-10		0.0181912	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1071	chr15	63803828	63803829	rs6494407	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.31	USP3	rs6494407-A	NR	4E-9		0.0176173	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1071	chr15	63803828	63803829	rs6494407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs6494407-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1071	chr15	63804506	63804507	rs146311723	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	15q22.31	USP3	rs146311723-C	0.175	4E-10	(EA)	0.017	[0.011-0.023] unit increase	NR [12082474] (imputed)	N
1071	chr15	63804506	63804507	rs146311723	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	15q22.31	USP3	rs146311723-T	NR	9E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1071	chr15	63804506	63804507	rs146311723	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	15q22.31	USP3	rs146311723-T	0.8235	7E-9		0.0154168	[0.01-0.021] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1071	chr15	63804506	63804507	rs146311723	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	15q22.31	USP3	rs146311723-C	0.174	2E-8		0.01231	[0.008-0.0166] unit increase	Affymetrix [11709857] (imputed)	N
1071	chr15	63804506	63804507	rs146311723	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q22.31	USP3	rs146311723-C	0.18	6E-9	(EA)	1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1071	chr15	63810624	63810625	rs72750932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	15q22.31		rs72750932-C	NR	1E-8		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1071	chr15	63813742	63813743	rs62011302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	15q22.31	NR	rs62011302-A	NR	2E-9		0.0202	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1071	chr15	63813742	63813743	rs62011302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	15q22.31	NR	rs62011302-A	NR	4E-13		0.024	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1071	chr15	63813742	63813743	rs62011302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q22.31	NR	rs62011302-A	NR	8E-15		0.027	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1071	chr15	63819426	63819427	rs55848327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q22.31		rs55848327-A	NR	3E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1071	chr15	63819426	63819427	rs55848327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	15q22.31	NR	rs55848327-A	NR	5E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1071	chr15	63819426	63819427	rs55848327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	15q22.31		rs55848327-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1071	chr15	63823300	63823301	rs982077	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	15q22.31	USP3	rs982077-A	0.434479031724371	3E-10		0.0453	[0.031-0.059] unit increase	NR [5035015] (imputed)	N
1071	chr15	63828891	63828891	rs200651966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q22.31	NR	rs200651966-C	0.810175	5E-18		0.0330803	[0.025-0.041] unit increase	Affymetrix [16577313] (imputed)	N
1071	chr15	63831983	63831984	rs2058914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	USP3	rs2058914-G	NR	1E-9		0.0189201	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1071	chr15	63831983	63831984	rs2058914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q22.31		rs2058914-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1071	chr15	63831983	63831984	rs2058914	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q22.31	NR	rs2058914-G	0.26	7E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix [2446094] (imputed)	N
1071	chr15	63831983	63831984	rs2058914	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q22.31	NR	rs2058914-G	0.26	5E-8				Affymetrix [2446094] (imputed)	N
1072	chr15	63841674	63841675	rs8023466	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.31		rs8023466-?	NR	5E-15		0.0228637	[0.017-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1072	chr15	63841674	63841675	rs8023466	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q22.31	USP3	rs8023466-G	0.865832	1E-6	(women)	0.0340238	[0.021-0.047] unit decrease	NR [17166351] (imputed)	N
1072	chr15	63841674	63841675	rs8023466	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q22.31	USP3	rs8023466-G	0.864657	1E-8		0.0298524	[0.02-0.04] unit decrease	NR [17166351] (imputed)	N
1072	chr15	63849286	63849287	rs34262657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q22.31	Intergenic	rs34262657-T	0.9571	4E-11	(MTAG)	0.0271	[0.019-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr15	63849286	63849287	rs34262657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q22.31		rs34262657-T	0.9619	3E-10		0.024	[0.017-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1072	chr15	63849286	63849287	rs34262657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q22.31	Intergenic	rs34262657-T	0.9619	6E-11	(MTAG)	0.023	[0.016-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr15	63858340	63858341	rs62012770	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.31	NR	rs62012770-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1072	chr15	63866707	63866708	rs74018128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	USP3	rs74018128-G	0.878255	3E-8	(-26 ms)	0.0461028	[0.029-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1072	chr15	63866876	63866877	rs62012772	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	15q22.31	USP3	rs62012772-T	0.8222	9E-6		0.0147	[0.0082-0.0212] unit decrease	Affymetrix [19819130] (imputed)	N
1072	chr15	63866876	63866877	rs62012772	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q22.31	USP3	rs62012772-T	0.8222	2E-20		0.0288	[0.023-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1072	chr15	63866876	63866877	rs62012772	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q22.31	USP3	rs62012772-T	0.8222	3E-6		0.0142	[0.0083-0.0201] unit decrease	Affymetrix [19819130] (imputed)	N
1072	chr15	63868810	63868811	rs62012774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q22.31	NR	rs62012774-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1072	chr15	63871291	63871292	rs7178762	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q22.31	NR	rs7178762-C	0.4889	2E-15		0.0323	[0.024-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1072	chr15	63871291	63871292	rs7178762	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q22.31	USP3	rs7178762-C	0.4595	5E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1072	chr15	63873442	63873443	rs62012778	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	15q22.31	USP3, FBXL22	rs62012778-A	0.966	4E-15	(YKL-40)	37.325	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1072	chr15	63873657	63873658	rs12907106	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	15q22.31	USP3	rs12907106-C	0.27	4E-8		0.039	[0.025-0.053] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1072	chr15	63881930	63881931	rs4984303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	USP3, USP3-AS1	rs4984303-T	NR	2E-8		0.0162468	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1072	chr15	63886592	63886593	rs2649	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	15q22.31	USP3	rs2649-T	0.13	5E-8		0.021	[0.013-0.029] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1072	chr15	63888494	63888495	rs4074448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q22.31	USP3-AS1	rs4074448-A	0.590372	7E-13		0.016604282	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr15	63888494	63888495	rs4074448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.31	USP3-AS1	rs4074448-A	0.590323	4E-23		0.02282974	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr15	63888494	63888495	rs4074448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q22.31	USP3-AS1	rs4074448-A	0.590324	1E-24		0.023593264	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1072	chr15	63891960	63891961	rs57017013	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q22.31	NR	rs57017013-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1072	chr15	63896374	63896375	rs8041548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.31		rs8041548-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1072	chr15	63898708	63898709	rs56902655	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q22.31	NR	rs56902655-G	0.136	4E-9		0.021862777	[0.015-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1072	chr15	63908665	63908666	rs374269292	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	15q22.31		rs374269292-?	NR	5E-10		0.511069	[0.35-0.68] unit decrease	NR [9800000] (imputed)	N
1072	chr15	63910432	63910433	rs75663391	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q22.31	HERC1	rs75663391-G	0.319425	9E-10		0.0129754	[0.0088-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
1072	chr15	63915785	63915786	rs11630290	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	15q22.31	HERC1	rs11630290-C		1E-6	(Iris Nevi)	0.09	[0.05-0.13] unit increase	Illumina [274604] (imputed)	N
1072	chr15	63938805	63938806	rs56333803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	HERC1	rs56333803-G	NR	2E-10		0.0212681	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1072	chr15	63938805	63938806	rs56333803	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.31	HERC1	rs56333803-G	NR	4E-8		0.0185177	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1072	chr15	63940057	63940058	rs34143602	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q22.31	NR	rs34143602-G	0.4221	1E-13		0.0347	[0.025-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1072	chr15	63944238	63944239	rs143267946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	15q22.31	HERC1	rs143267946-C	NR	6E-9		0.0215868	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1072	chr15	63944238	63944239	rs143267946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q22.31	HERC1	rs143267946-C	NR	3E-9		0.0220167	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
1072	chr15	63952531	63952531	rs542221686	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.31		rs542221686-?	NR	4E-16		0.0280907	[0.021-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1073	chr15	63988764	63988765	rs17186681	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	15q22.31	FBXL22, HERC1, USP3, USP3-AS1	rs17186681-?	NR	1E-12				Affymetrix [up to 7325140] (imputed)	N
1073	chr15	63988764	63988765	rs17186681	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q22.31	NR	rs17186681-T	0.198520639931766	1E-8		0.0065610423	[0.0043-0.0088] unit increase	NR [NR]	N
1073	chr15	63988764	63988765	rs17186681	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	15q22.31	NR	rs17186681-T	0.198520639931766	3E-8		0.007914303	[0.0051-0.0107] unit increase	NR [NR]	N
1073	chr15	63988764	63988765	rs17186681	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q22.31	NR	rs17186681-T	0.198520639931766	3E-8		0.010271766	[0.0067-0.0139] unit increase	NR [NR]	N
1073	chr15	63988764	63988765	rs17186681	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	15q22.31	NR	rs17186681-T	0.198520639931766	2E-8		0.006595448	[0.0043-0.0089] unit increase	NR [NR]	N
1073	chr15	63998914	63998916	rs34366173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	15q22.31	RP11-317G6.1, HERC1	rs34366173-C	0.556	9E-11		0.02358172	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr15	64004246	64004247	rs74692183	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q22.31		rs74692183-T	0.05	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1073	chr15	64004246	64004247	rs74692183	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q22.31		rs74692183-C	0.954	1E-10		0.017	[0.011-0.023] unit increase	NR [NR] (imputed)	N
1073	chr15	64011804	64011805	rs79503123	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q22.31	NR	rs79503123-C	0.0445	7E-10		0.0161567	[0.011-0.021] unit decrease	NR [9732723] (imputed)	N
1073	chr15	64021475	64021476	rs61740450	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	15q22.31	HERC1	rs61740450-G	0.031	9E-6		0.058	[0.033-0.083] unit decrease	Illumina [at least 81396]	N
1073	chr15	64038339	64038340	rs67507374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	15q22.31		rs67507374-A	NR	1E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1073	chr15	64038339	64038340	rs67507374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	15q22.31	NR	rs67507374-A	NR	1E-12		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1073	chr15	64075101	64075102	rs74320127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs74320127-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1073	chr15	64075101	64075102	rs74320127	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	15q22.31	HERC1	rs74320127-G	0.05	5E-8		1.71		Illumina [8974355] (imputed)	N
1073	chr15	64075101	64075102	rs74320127	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	15q22.31	HERC1	rs74320127-G	0.05	5E-8		1.71		Illumina [8974355] (imputed)	N
1074	chr15	64103776	64103777	rs7170477	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q22.31	HERC1	rs7170477-A	0.304	5E-8		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1074	chr15	64142320	64142321	rs4776455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q22.31		rs4776455-A	0.397414	2E-17		0.019254962	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1074	chr15	64142320	64142321	rs4776455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q22.31	NR	rs4776455-G	0.603257	1E-17		0.016486	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1074	chr15	64142320	64142321	rs4776455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q22.31		rs4776455-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1074	chr15	64147816	64147817	rs4777232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs4777232-T	0.610106	2E-16				Affymetrix, Illumina [22063850] (imputed)	N
1074	chr15	64150868	64150869	rs7180823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q22.31	MIR422A	rs7180823-G	NR	8E-9		0.017985	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1074	chr15	64150868	64150869	rs7180823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31		rs7180823-G	0.303547	3E-25		0.02586819	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1074	chr15	64159258	64159259	rs12594100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q22.31	MIR422A	rs12594100-T	NR	5E-9		0.0183857	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1074	chr15	64167097	64167098	rs34675318	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q22.31	DAPK2	rs34675318-G	0.711191	4E-15		0.0165257	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
1074	chr15	64190367	64190368	rs112146819	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q22.31	RP11-111E14.2	rs112146819-T	0.0012	3E-7		1.4487	[0.9-2] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1074	chr15	64216808	64216809	rs77560710	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	15q22.31	NR	rs77560710-?	NR	5E-6		2123.1248	NR unit decrease	Illumina [2379855]	N
1075	chr15	64236440	64236441	rs12908891	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	15q22.31	DAPK2	rs12908891-G	0.49	1E-6		0.06	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
1075	chr15	64238155	64238156	rs9806191	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	15q22.31	DAPK2	rs9806191-?		3E-8				Illumina [563980]	N
1075	chr15	64277641	64277642	rs922182	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q22.31	DAPK2	rs922182-T	0.4471831	3E-18	(EA, Death-associated protein kinase 2)	0.3768	[0.29-0.46] unit increase	Affymetrix [509946]	N
1075	chr15	64290384	64290385	rs55963180	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	15q22.31	DAPK2	rs55963180-?	NR	1E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1075	chr15	64304843	64304844	rs72755010	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	15q22.31		rs72755010-C	0.042	3E-6		2.8		Illumina [5409651] (imputed)	N
1075	chr15	64309265	64309266	rs332288	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	15q22.31	DAPK2	rs332288-T	0.091	3E-6		1.791	[1.404-2.284]	Affymetrix, Illumina [14074516] (imputed)	N
1075	chr15	64315335	64315336	rs12442060	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x dichotomous lifestyle risk score interaction (2df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	15q22.31	DAPK2	rs12442060-C	0.635	3E-6				NR [2407629] (imputed)	N
1075	chr15	64315335	64315336	rs12442060	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x dichotomous lifestyle risk score interaction (1df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	15q22.31	DAPK2	rs12442060-C	0.635	5E-7		2.55	[1.55-3.55] unit decrease	NR [2407629] (imputed)	N
1075	chr15	64342756	64342757	rs72755040	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q22.31		rs72755040-G	0.945	7E-12		0.17	[0.12-0.21] % increase	Affymetrix [NR] (imputed)	N
1075	chr15	64342913	64342914	rs55994383	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	15q22.31	DAPK2	rs55994383-T	0.487	1E-6		0.019	[0.011-0.027] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1075	chr15	64345948	64345949	rs113294283	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q22.31		rs113294283-A	0.09515	3E-6		30.938192	z score increase	NR [6814003]	N
1075	chr15	64349613	64349614	rs141207816	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	15q22.31	DAPK2	rs141207816-A	0.0023	6E-10		0.2472325	[0.17-0.33] unit increase	Affymetrix [~ 2500000] (imputed)	N
1076	chr15	64370621	64370622	rs76498583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs76498583-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1076	chr15	64372534	64372535	rs138137126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cystitis	4,921 European ancestry cases, 450,694 European ancestry controls, 1,665 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	15q22.31		rs138137126-T	NR	4E-8		7.1204	[4.57-9.67] unit increase	Affymetrix, Illumina [25842667] (imputed)	N
1076	chr15	64428120	64428121	rs34123051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q22.31		rs34123051-C	NR	3E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1076	chr15	64447350	64447351	rs62024247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q22.31		rs62024247-C	NR	3E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1076	chr15	64448459	64448460	rs41434449	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q22.31	SNX22	rs41434449-A	0.866747	1E-9		0.0185784	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1076	chr15	64486541	64486541	rs539389645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs539389645-CT	0.1205	2E-11		0.03700482	[0.026-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1077	chr15	64535699	64535700	rs4561409	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	15q22.31	CSNK1G1	rs4561409-C		6E-6		1.3	[1.16-1.45]	Illumina [10258281] (imputed)	N
1077	chr15	64536565	64536566	rs142844348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs142844348-T	0.121891	1E-15		0.028043453	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr15	64536565	64536566	rs142844348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs142844348-T	0.121768	2E-15		0.029911	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr15	64536565	64536566	rs142844348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs142844348-T	0.121772	3E-12		0.02398801	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr15	64542965	64542965	rs58211977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs58211977-GA	0.113609	2E-31		0.041067675	[0.034-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1077	chr15	64604534	64604535	rs4777105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs4777105-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1078	chr15	64628454	64628456	rs10547644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs10547644-ATC	0.121108	3E-65		0.05815422	[0.051-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr15	64628916	64628917	rs8034610	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q22.31		rs8034610-G	0.121	3E-32				Affymetrix [10369434] (imputed)	N
1078	chr15	64629872	64629873	rs7180079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs7180079-G	0.878787	7E-24		0.034131948	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr15	64629872	64629873	rs7180079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs7180079-G	0.87405	8E-101				Affymetrix, Illumina [23467995] (imputed)	N
1078	chr15	64629872	64629873	rs7180079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q22.31	NR	rs7180079-G	0.876937	3E-95		0.059435	[0.054-0.065] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1078	chr15	64629872	64629873	rs7180079	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs7180079-G	0.8786	8E-25		0.05643542	[0.046-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64638256	64638256	rs141328146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q22.31	CSNK1G1, CTD-2116N17.1	rs141328146-GGAATTACA	0.9428556	9E-14		0.03579181	[0.026-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr15	64638256	64638256	rs141328146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q22.31	NR	rs141328146-I	0.942797	2E-13		0.033763	[0.025-0.043] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1078	chr15	64642516	64642517	rs28619038	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	15q22.31		rs28619038-C	0.879	2E-20				Affymetrix [10369434] (imputed)	N
1078	chr15	64642516	64642517	rs28619038	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	15q22.31	CTD-2116N17.1, CSNK1G1	rs28619038-A	0.1198	3E-12		0.03909106	[0.028-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64646776	64646777	rs1533378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs1533378-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1078	chr15	64648185	64648186	rs35755513	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	15q22.31	CSNK1G1	rs35755513-C	NR	3E-8		0.0094421	[0.0061-0.0128] unit increase	Affymetrix [18485882] (imputed)	N
1078	chr15	64648185	64648186	rs35755513	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q22.31	NR	rs35755513-T	NR	3E-8		5.549	z score increase	Affymetrix [10847151] (imputed)	N
1078	chr15	64648185	64648186	rs35755513	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	15q22.31	NR	rs35755513-T	NR	4E-8		0.02414	[0.016-0.033] unit increase	Affymetrix [10847151] (imputed)	N
1078	chr15	64649546	64649547	rs145273332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs145273332-C	0.0512342	9E-12				Affymetrix, Illumina [19905671] (imputed)	N
1078	chr15	64649862	64649863	rs35791705	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q22.31	NR	rs35791705-?	NR	4E-6		2.72	[2.35-3.15]	Illumina [539000] (imputed)	N
1078	chr15	64653504	64653505	rs35659638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q22.31		rs35659638-C	NR	3E-50		0.0494	[0.043-0.056] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1078	chr15	64654007	64654008	rs62022693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	15q22.31	NR	rs62022693-G	NR	6E-10		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1078	chr15	64654007	64654008	rs62022693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	15q22.31	NR	rs62022693-G	NR	8E-12		0.0238	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1078	chr15	64654966	64654967	rs60606273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	15q22.31	CTD-2116N17.1	rs60606273-T	0.9399	3E-12		0.05331937	[0.038-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64654966	64654967	rs60606273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q22.31	CTD-2116N17.1	rs60606273-T	0.94	1E-10		0.04935336	[0.034-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64654966	64654967	rs60606273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q22.31	CTD-2116N17.1	rs60606273-T	0.94	2E-10		0.04853252	[0.034-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64654966	64654967	rs60606273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q22.31	CTD-2116N17.1	rs60606273-T	0.94	2E-10		0.04838958	[0.033-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64654966	64654967	rs60606273	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	15q22.31	CTD-2116N17.1	rs60606273-T	0.94	1E-10		0.04906498	[0.034-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q22.31		rs2062250-A	NR	8E-21		0.0382	[0.03-0.046] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q22.31		rs2062250-A	NR	4E-17		0.0374	[0.029-0.046] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q22.31	KIAA0101	rs2062250-A	0.9397359	7E-20		0.042658936	[0.034-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs2062250-A	0.92808	2E-39				Affymetrix, Illumina [24649327] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q22.31	NR	rs2062250-A	0.938363	2E-38		0.050625	[0.043-0.058] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs2062250-A	0.927283	2E-29				Affymetrix, Illumina [23114412] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q22.31	NR	rs2062250-A	0.938519	1E-30		0.047004	[0.039-0.055] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1078	chr15	64672001	64672002	rs2062250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q22.31		rs2062250-?	NR	6E-27				NR [~ 8900000] (imputed)	N
1078	chr15	64725489	64725490	rs74615166	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	15q22.31	TRIP4	rs74615166-C	0.02	4E-7		1.29	[1.17-1.42]	Illumina [7055881] (imputed)	N
1078	chr15	64744789	64744790	rs72741332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q22.31		rs72741332-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1079	chr15	64771482	64771483	rs72741349	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	15q22.31	Intergenic	rs72741349-?		1E-6		179.1	[106.97-251.23] unit decrease	Illumina [~ 10000000] (imputed)	N
1079	chr15	64817520	64817521	rs2166735	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	15q22.31	NR	rs2166735-T	0.6035	3E-7		1.2849	[0.8-1.77] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1080	chr15	64896297	64896298	rs16948101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q22.31	Intergenic	rs16948101-A	0.9238	3E-8	(MTAG)	0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1080	chr15	64933981	64933982	rs4777499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q22.31		rs4777499-T	NR	5E-9		0.0232	[0.016-0.031] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1080	chr15	64952698	64952699	rs76064345	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q22.31	CSNK1G1, KIAA0101, OAZ2, RBPMS2, TRIP4, ZNF609	rs76064345-T	0.947117	3E-7		5.108	z score decrease	Illumina [18485882] (imputed)	N
1080	chr15	64955473	64955474	rs34059679	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q22.31	Intergenic	rs34059679-G	0.9348	3E-8		0.0255	[0.016-0.035] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1081	chr15	65023231	65023232	rs4984613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q22.31	Intergenic	rs4984613-T	0.0654	1E-12	(MTAG)	0.0239	[0.017-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1081	chr15	65023231	65023232	rs4984613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q22.31		rs4984613-T	0.0683	8E-10		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1081	chr15	65023231	65023232	rs4984613	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q22.31	Intergenic	rs4984613-T	0.0683	5E-12	(MTAG)	0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1081	chr15	65024203	65024204	rs6494488	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q22.31	RBPMS2	rs6494488-A	0.8117	4E-8		0.0382	[0.024-0.052] unit increase	Affymetrix [at least 7947838] (imputed)	N
1081	chr15	65024203	65024204	rs6494488	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q22.31	RBPMS2	rs6494488-A	0.8076	1E-8		0.0431	[0.028-0.058] unit increase	NR [8041861] (imputed)	N
1081	chr15	65034899	65034900	rs7496259	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	RBPMS2	rs7496259-T	0.0642378	2E-8	(-28 ms)	0.0632012	[0.04-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1081	chr15	65035978	65035979	rs3935716	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q22.31	RBPMS2	rs3935716-A	0.15	1E-10		0.61	[0.41-0.81] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1081	chr15	65035978	65035979	rs3935716	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	15q22.31	RBPMS2	rs3935716-A	0.1233	1E-9		0.6188	[0.42-0.82] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1081	chr15	65056958	65056959	rs8035677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q22.31	RBPMS2	rs8035677-G	0.0310859999999999	5E-13		0.047135666	[0.034-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr15	65072460	65072461	rs2414856	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	15q22.31	NR	rs2414856-?	NR	3E-6		0.6535	[0.38-0.93] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1081	chr15	65072460	65072461	rs2414856	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Pulse pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	15q22.31	NR	rs2414856-?	NR	1E-6		0.49	[0.29-0.69] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
1081	chr15	65096707	65096708	rs141601939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q22.31		rs141601939-C	0.029318	4E-11		0.04451041	[0.031-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr15	65104825	65104826	rs4777602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	PIF1	rs4777602-G	0.138531	4E-9		0.021896712	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr15	65110124	65110125	rs60814085	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	15q22.31	PIF1	rs60814085-G	NR	2E-6		0.103857376	[0.068-0.14] unit decrease	Illumina [> 6200000] (imputed)	N
1081	chr15	65117192	65117193	rs34788172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	PIF1	rs34788172-C	0.127393	3E-11		0.04095175	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr15	65153689	65153690	rs12595292	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	15q22.31	PLEKHO2	rs12595292-A	0.12	9E-6		0.1065	[0.06-0.153] unit increase	Affymetrix [~ 2740000] (imputed)	N
1082	chr15	65153715	65153716	rs143331139	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	15q22.31		rs143331139-?	NR	1E-14		0.445889	[0.33-0.57] unit increase	NR [9800000] (imputed)	N
1082	chr15	65153715	65153716	rs143331139	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	15q22.31		rs143331139-?	NR	2E-9		0.315121	[0.2-0.43] unit decrease	NR [9800000] (imputed)	N
1082	chr15	65153715	65153716	rs143331139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	PLEKHO2, AC069368.3	rs143331139-A	2.95999999999963E-4	7E-14		0.5556494	[0.41-0.7] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr15	65165886	65165887	rs34991606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs34991606-C	0.855299	2E-83				Affymetrix, Illumina [17210439] (imputed)	N
1082	chr15	65165955	65165956	rs12911407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q22.31	NR	rs12911407-G	0.145011	5E-79		0.049337	[0.044-0.054] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1082	chr15	65166308	65166309	rs832890	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q22.31	AC069368.3	rs832890-T	0.4624	8E-13		0.124	[0.09-0.158] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1082	chr15	65171039	65171040	rs869043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.31		rs869043-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1082	chr15	65174437	65174438	rs188761057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	AC069368.3	rs188761057-A	0.013383	3E-17		0.08602964	[0.066-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr15	65174493	65174494	rs149678861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	AC069368.3	rs149678861-G	0.00228799999999996	9E-23		0.24870378	[0.2-0.3] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr15	65176191	65176192	rs1719263	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q22.31		rs1719263-G	0.863	5E-34				Affymetrix [10369434] (imputed)	N
1082	chr15	65179286	65179287	rs2630503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q22.31		rs2630503-G	NR	1E-50		0.0397	[0.035-0.045] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1082	chr15	65181279	65181280	rs61009920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q22.31	AC069368.3	rs61009920-A	0.138937	3E-70		0.057902444	[0.052-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr15	65181279	65181280	rs61009920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs61009920-A	0.279529	2E-87				Affymetrix, Illumina [24588908] (imputed)	N
1082	chr15	65182222	65182223	rs1719285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q22.31	AC069368.3	rs1719285-A	0.159275	2E-36		0.07171399	[0.061-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1082	chr15	65183800	65183801	rs1719271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q22.31	AC069368.3	rs1719271-G	0.139003	1E-65		0.055977907	[0.05-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr15	65183800	65183801	rs1719271	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	15q22.31	ANKDD1A	rs1719271-G	NR	1E-11		3.414	[2.43-4.4] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1082	chr15	65184199	65184200	rs1719272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q22.31	AC069368.3	rs1719272-A	0.159271	5E-22		0.029870925	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1082	chr15	65185883	65185884	rs1684032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	15q22.31		rs1684032-T	0.828351	2E-13		0.0321698	[0.024-0.041] unit increase	Illumina [13478928] (imputed)	N
1082	chr15	65187873	65187874	rs1522744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.31		rs1522744-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1082	chr15	65187873	65187874	rs1522744	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	15q22.31	PLEKHO2, ANKDD1A	rs1522744-?	NR	6E-10		0.03539	[0.024-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1082	chr15	65188423	65188424	rs1002311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	15q22.31	NR	rs1002311-C	0.173209	2E-11		0.033386	[0.024-0.043] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1082	chr15	65191447	65191448	rs1684053	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	15q22.31	AC069368.3	rs1684053-T	0.1635	2E-54		0.07559746	[0.066-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr15	65198590	65198591	rs1631677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q22.31	AC069368.3	rs1631677-G	0.1432	1E-19		0.04740221	[0.037-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1082	chr15	65200803	65200804	rs1684041	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	15q22.31	AC069368.3	rs1684041-T	0.1433	8E-24		0.05221592	[0.042-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1082	chr15	65229815	65229816	rs55710439	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	15q22.31	ANKDD1A	rs55710439-T	0.014181	3E-6		0.104958	[0.061-0.149] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1082	chr15	65253469	65253470	rs7168348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs7168348-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1083	chr15	65326832	65326833	rs12906662	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	15q22.31	MTFMT	rs12906662-A	0.4503	5E-6		0.0264	[0.015-0.038] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1083	chr15	65326832	65326833	rs12906662	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	15q22.31	MTFMT, SLC51B	rs12906662-A		6E-9		5.656	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
1083	chr15	65331766	65331767	rs2946653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.31		rs2946653-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1083	chr15	65355467	65355468	rs12443113	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	15q22.31	RASL12	rs12443113-G	0.55	2E-6				Affymetrix, Illumina [9900000] (imputed)	N
1083	chr15	65355467	65355468	rs12443113	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	15q22.31	RASL12	rs12443113-G	0.55	3E-7		0.029	[0.017-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1083	chr15	65355467	65355468	rs12443113	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	15q22.31	RASL12	rs12443113-G	NR	3E-8		0.0313	[0.02-0.042] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1083	chr15	65365618	65365619	rs183962336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q22.31		rs183962336-G	NR	7E-9		0.1076	[0.071-0.144] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1084	chr15	65472526	65472527	rs142954778	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	15q22.31		rs142954778-?	NR	1E-10		0.100842	[0.069-0.133] unit increase	NR [9800000] (imputed)	N
1084	chr15	65472526	65472527	rs142954778	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	15q22.31		rs142954778-?	NR	4E-12		0.114162	[0.082-0.147] unit increase	NR [9800000] (imputed)	N
1084	chr15	65493851	65493852	rs2073708	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	15q22.31		rs2073708-?	NR	7E-9		0.387	[0.26-0.52] unit decrease	Affymetrix [10600000] (imputed)	N
1084	chr15	65500434	65500435	rs2019185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	CILP	rs2019185-G	0.409864	5E-9	(282 ms)	0.0335191	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1084	chr15	65500434	65500435	rs2019185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	CILP	rs2019185-G	0.409864	5E-11	(266 ms)	0.0378117	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1084	chr15	65500434	65500435	rs2019185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	CILP	rs2019185-G	0.409864	4E-9	(280 ms)	0.0338333	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1084	chr15	65500434	65500435	rs2019185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	CILP	rs2019185-G	0.409864	2E-9	(274 ms)	0.034755	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1084	chr15	65500434	65500435	rs2019185	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.31	CILP	rs2019185-G	0.409864	2E-8	(284 ms)	0.0322223	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1084	chr15	65523680	65523681	rs8027881	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q22.31	NR	rs8027881-?	NR	9E-8				Affymetrix [NR]	N
1085	chr15	65606242	65606243	rs147693426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs147693426-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1085	chr15	65606650	65606651	rs534765452	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	15q22.31	RNU5B-1	rs534765452-T	0.9984	2E-7		1.5313	[0.95-2.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1085	chr15	65657512	65657513	rs547234144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q22.31		rs547234144-A	0.011806	2E-8		0.0554727	[0.036-0.075] unit increase	Illumina [13479295] (imputed)	N
1086	chr15	65667932	65667933	rs72625758	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.31	NR	rs72625758-C	0.02091	9E-9	(JAK3)	0.06598	NR unit increase	Illumina [1671387] (imputed)	N
1086	chr15	65693257	65693258	rs35223184	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q22.31	IGDCC4	rs35223184-T	0.012	4E-27	(Immunoglobulin superfamily DCC subclass member 4, IGDCC4.9793.145.3)	1.23	[1.01-1.45] unit increase	Affymetrix [10572788] (imputed)	N
1086	chr15	65713812	65713813	rs28665840	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.31	IGDCC4	rs28665840-T	0.815201	3E-25		0.0248059	[0.02-0.029] unit increase	NR [13737936] (imputed)	N
1086	chr15	65715170	65715171	rs147704873	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q22.31		rs147704873-A	0.1866	3E-7		36.158676	z score increase	NR [6814003]	N
1086	chr15	65717905	65717906	rs669799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q22.31	IGDCC4	rs669799-T	0.246244	4E-16		0.0220322	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65719966	65719967	rs141545107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs141545107-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1086	chr15	65721119	65721125	rs58152544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.31		rs58152544-C	0.244155	8E-15		0.026563805	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65734015	65734015	rs113968785	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q22.31		rs113968785-A	0.748	4E-101		0.28	[0.25-0.3] % increase	Affymetrix [NR] (imputed)	N
1086	chr15	65734015	65734015	rs113968785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.31	DPP8	rs113968785-AAAAC	0.254052	2E-44		0.03619011	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1086	chr15	65734015	65734015	rs113968785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q22.31	DPP8	rs113968785-AAAAC	0.254002	1E-37		0.0709396	[0.066-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65734015	65734015	rs113968785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q22.31	DPP8	rs113968785-AAAAC	0.253995	2E-49		0.051179826	[0.044-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65734039	65734040	rs627804	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	15q22.31	IGDCC4, DPP8	rs627804-?	NR	3E-8		0.02655	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1086	chr15	65734464	65734465	rs143814405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGDCC4	5,360 Icelandic ancestry individuals	NA	15q22.31		rs143814405-C	0.01627	6E-36		0.902183	[0.76-1.04] unit increase	Illumina [7506463] (imputed)	N
1086	chr15	65738079	65738080	rs72739469	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q22.31	NR	rs72739469-T	0.0606362	9E-9		0.07554986	[0.05-0.101] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1086	chr15	65738079	65738080	rs72739469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q22.31	Intergenic	rs72739469-T	0.9433	8E-9		0.0358	[0.024-0.048] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1086	chr15	65738079	65738080	rs72739469	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q22.31	NR	rs72739469-T	NR	1E-9		6.083	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1086	chr15	65738079	65738080	rs72739469	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q22.31	NR	rs72739469-?	NR	1E-7		5.303	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1086	chr15	65741511	65741512	rs34511941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q22.31	DPP8	rs34511941-C	0.246819	3E-66		0.0453362	[0.04-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65742389	65742390	rs28574727	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q22.31	DPP8	rs28574727-T	0.1841	1E-15		0.0367303	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1086	chr15	65742389	65742390	rs28574727	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q22.31	DPP8	rs28574727-T	0.1841	6E-9		0.02673046	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1086	chr15	65742389	65742390	rs28574727	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q22.31	DPP8	rs28574727-T	0.1841	4E-15		0.03611006	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1086	chr15	65749679	65749680	rs581694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q22.31		rs581694-C	NR	3E-39		0.0254	[0.022-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1086	chr15	65749679	65749680	rs581694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	15q22.31		rs581694-C	0.664308	6E-13		0.0242184	[0.018-0.031] unit increase	Illumina [13479135] (imputed)	N
1086	chr15	65749679	65749680	rs581694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q22.31		rs581694-C	NR	2E-126		0.0537	[0.049-0.058] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1086	chr15	65749679	65749680	rs581694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q22.31	DPP8	rs581694-C	0.24579	9E-30		0.029663974	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65749679	65749680	rs581694	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs581694-C	0.347504	3E-60				Affymetrix, Illumina [24332387] (imputed)	N
1086	chr15	65749679	65749680	rs581694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.31		rs581694-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1086	chr15	65754308	65754309	rs660931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q22.31	NR	rs660931-T	0.247984	1E-27		0.023793	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1086	chr15	65758873	65758874	rs7496362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs7496362-G	0.407347	8E-16				Affymetrix, Illumina [23114412] (imputed)	N
1086	chr15	65758873	65758874	rs7496362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q22.31	NR	rs7496362-G	0.366398	4E-18		0.017502	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1086	chr15	65760832	65760833	rs10714153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q22.31	DPP8	rs10714153-C	0.395543	7E-14		0.017399445	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1086	chr15	65785696	65785697	rs191927852	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.31	DPP8	rs191927852-G	0.981403	1E-15		0.0544394	[0.041-0.068] unit increase	NR [13737936] (imputed)	N
1086	chr15	65785696	65785697	rs191927852	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.31		rs191927852-?	NR	4E-14		0.0570834	[0.042-0.072] unit increase	Affymetrix [20259828] (imputed)	N
1086	chr15	65789429	65789430	rs8034057	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q22.31	IGDCC4	rs8034057-G	0.90484375	4E-16	(IGDCC4, 9793_145_3)	0.34413615	[0.26-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1087	chr15	65822776	65822777	rs452306	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	15q22.31	HACD3	rs452306-T	0.5867	6E-13		0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1087	chr15	65830517	65830518	rs2456015	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	15q22.31	PTPLAD1	rs2456015-T	0.7562	9E-10		0.02469321	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr15	65831018	65831019	rs13380251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs13380251-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1087	chr15	65848110	65848111	rs28457012	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q22.31	NR	rs28457012-?	NR	5E-6		4.556	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1087	chr15	65856804	65856805	rs12916360	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q22.31	PTPLAD1	rs12916360-T	NR	2E-8		0.025131594	[0.016-0.034] unit increase	Affymetrix [NR]	N
1087	chr15	65872896	65872897	rs68192600	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q22.31		rs68192600-A	0.1325	1E-12	(conditional-joint)	0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1087	chr15	65874717	65874718	rs34571450	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q22.31		rs34571450-T	0.8284	3E-7		36.08134	z score increase	NR [6814003]	N
1087	chr15	65888358	65888359	rs7165102	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	15q22.31	C15orf44	rs7165102-T	NR	3E-7	(Asian)	0.0038	[0.0024-0.0052] unit decrease	NR [2500000] (imputed)	N
1087	chr15	65902921	65902922	rs6494529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q22.31		rs6494529-A	NR	2E-20		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1087	chr15	65912881	65912882	rs76702386	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGDCC4	5,360 Icelandic ancestry individuals	NA	15q22.31		rs76702386-C	0.09715	8E-24		0.311737	[0.25-0.37] unit decrease	Illumina [7506463] (imputed)	N
1087	chr15	65912881	65912882	rs76702386	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q22.31	NR	rs76702386-C	0.089	7E-19	(Immunoglobulin superfamily DCC subclass member 4, IGDCC4.9793.145.3)	0.4	[0.32-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
1087	chr15	65916526	65916527	rs3743171	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	15q22.31	SLC24A1	rs3743171-T	0.191	3E-8		0.024	[0.032-0.015] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1088	chr15	65935194	65935195	rs12101597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs12101597-G	0.502743	1E-19				Affymetrix, Illumina [24653286] (imputed)	N
1088	chr15	65935194	65935195	rs12101597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q22.31	NR	rs12101597-G	0.432643	2E-21		0.017813	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1088	chr15	65941009	65941010	rs12914034	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q22.31	NR	rs12914034-A	0.636542	5E-8		0.00693667	[0.0043-0.0096] unit increase	Affymetrix [16578495] (imputed)	N
1088	chr15	65956602	65956605	rs57260104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q22.31		rs57260104-T	NR	2E-17		0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1088	chr15	65959728	65959729	rs12591647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q22.31		rs12591647-T	0.8171	8E-17		0.0152	[0.012-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1088	chr15	65965207	65965207	rs71447853	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q22.31	NR	rs71447853-A	0.581194	2E-9		0.0152977	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
1088	chr15	65977890	65977891	rs6494533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs6494533-?	NR	2E-53				NR [~ 8900000] (imputed)	N
1088	chr15	65979791	65979792	rs12914495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q22.31	Intergenic	rs12914495-A	0.829	2E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr15	65979791	65979792	rs12914495	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	15q22.31	DENND4A	rs12914495-?	NR	2E-10		6.372	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1088	chr15	65980006	65980007	rs8028238	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q22.31	NR	rs8028238-?	NR	7E-7				Affymetrix [NR]	N
1088	chr15	65982676	65982677	rs28513670	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q22.31	DENND4A	rs28513670-?	NR	1E-9		0.016429868	[0.011-0.022] unit decrease	NR [7306098]	N
1088	chr15	65990595	65990596	rs7175692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs7175692-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1088	chr15	65990595	65990596	rs7175692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q22.31	Intergenic	rs7175692-A	0.8189	8E-17	(MTAG)	0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr15	65990595	65990596	rs7175692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q22.31	Intergenic	rs7175692-A	0.8151	5E-20	(MTAG)	0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr15	65990595	65990596	rs7175692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q22.31	Intergenic	rs7175692-A	0.8191	2E-13	(MTAG)	0.0218	[0.016-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr15	65998701	65998702	rs7176565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q22.31	NR	rs7176565-C	0.246065	1E-262		0.077409	[0.073-0.082] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1088	chr15	66003826	66003827	rs12910525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q22.31	DENND4A	rs12910525-T	0.176745	4E-34		0.03543496	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr15	66007971	66007972	rs28687655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs28687655-T	0.315841	3E-26				Affymetrix, Illumina [23467995] (imputed)	N
1088	chr15	66007971	66007972	rs28687655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs28687655-T	0.342602	8E-89				Affymetrix, Illumina [21126107] (imputed)	N
1088	chr15	66007971	66007972	rs28687655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q22.31	NR	rs28687655-T	0.245961	1E-80		0.044098	[0.04-0.049] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1088	chr15	66007971	66007972	rs28687655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs28687655-T	0.339479	3E-293				Affymetrix, Illumina [20825802] (imputed)	N
1088	chr15	66007971	66007972	rs28687655	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	15q22.31	DENND4A	rs28687655-T	0.2457	1E-32		0.04783058	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1088	chr15	66009247	66009248	rs12900061	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q22.31		rs12900061-A	0.1623	4E-9		44.859818	z score increase	NR [6814003]	N
1088	chr15	66009247	66009248	rs12900061	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q22.31	DENND4A	rs12900061-A	NR	5E-10		0.036577545	[0.025-0.048] unit increase	Affymetrix [NR]	N
1088	chr15	66009247	66009248	rs12900061	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q22.31	NR	rs12900061-A	0.1777	5E-11		0.019248202	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1088	chr15	66013285	66013295	rs528059595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q22.31		rs528059595-T	NR	2E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1088	chr15	66016018	66016019	rs72741249	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q22.31	NR	rs72741249-G	0.0675944	1E-8		0.07158999	[0.047-0.096] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1088	chr15	66016018	66016019	rs72741249	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q22.31	NR	rs72741249-?	NR	5E-7		5.038	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1088	chr15	66016719	66016720	rs35006844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q22.31	DENND4A	rs35006844-G	0.251387	4E-9		0.016027944	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr15	66020907	66020908	rs7497961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	15q22.31		rs7497961-G	0.710231	4E-28		0.0435059	[0.036-0.051] unit decrease	Illumina [13476266] (imputed)	N
1088	chr15	66020907	66020908	rs7497961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q22.31		rs7497961-G	NR	2E-12		0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1088	chr15	66020907	66020908	rs7497961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs7497961-G	0.246941	1E-12		0.0182011	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1088	chr15	66033125	66033126	rs77559483	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGDCC4	5,360 Icelandic ancestry individuals	NA	15q22.31		rs77559483-A	0.01353	6E-16		0.65554	[0.5-0.81] unit increase	Illumina [7506463] (imputed)	N
1088	chr15	66033125	66033126	rs77559483	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q22.31	NR	rs77559483-A	0.018	6E-14	(Immunoglobulin superfamily DCC subclass member 4, IGDCC4.9793.145.3)	0.72	[0.52-0.92] unit increase	Affymetrix [10572788] (imputed)	N
1088	chr15	66034068	66034069	rs61751117	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	15q22.31	DENND4A, SLC24A1, MIR4511, TRNAQ24	rs61751117-C	0.04	8E-7		0.78	[0.47-1.09] unit increase	Illumina [7797256] (imputed)	N
1088	chr15	66040960	66040961	rs35086835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs35086835-T	0.171504	5E-17		0.024713114	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1088	chr15	66044465	66044465	rs11430669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs11430669-CG	0.359007	4E-16		0.018787308	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1088	chr15	66049600	66049601	rs557277320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs557277320-T	0.4412	5E-9		0.02112256	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1088	chr15	66051298	66051299	rs12899850	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q22.31	NR	rs12899850-C	NR	2E-10		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1088	chr15	66051344	66051345	rs6494537	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q22.31	DENND4A, DPP8, HACD3, SLC24A1	rs6494537-T		3E-11		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1088	chr15	66051344	66051345	rs6494537	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	15q22.31	IGDCC4, DPP8, PTPLAD1, C15orf44, SLC24A1, DENND4A	rs6494537-C	0.27	3E-9		0.078	[0.053-0.103] unit increase	Illumina [561583]	N
1088	chr15	66054348	66054349	rs7181649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs7181649-C	0.2599	8E-18		0.0346963	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr15	66062574	66062575	rs72741274	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q22.31	DENND4A	rs72741274-T	NR	4E-9		0.037347373	[0.025-0.05] unit decrease	Affymetrix [NR]	N
1089	chr15	66066617	66066618	rs28552840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q22.31	NR	rs28552840-C	0.240215	1E-53		0.033457	[0.029-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1089	chr15	66066617	66066618	rs28552840	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q22.31	NR	rs28552840-C	0.240191	3E-209		0.065798	[0.062-0.07] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1089	chr15	66067187	66067188	rs28522606	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q22.31	DENND4A	rs28522606-T	0.3127	2E-6		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1089	chr15	66067206	66067207	rs397854207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q22.31		rs397854207-C	NR	3E-21		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1089	chr15	66067206	66067207	rs397854207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs397854207-C	0.260523	1E-20		0.023863476	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr15	66067206	66067207	rs397854207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs397854207-C	0.260523	1E-10		0.01640616	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr15	66067206	66067207	rs397854207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q22.31	RAB11A, DENND4A	rs397854207-C	0.260535	3E-18		0.022054631	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1089	chr15	66067776	66067777	rs28498859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	15q22.31		rs28498859-G	NR	5E-46		0.0323	[0.028-0.037] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1089	chr15	66067776	66067777	rs28498859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs28498859-?	NR	7E-43				NR [~ 8900000] (imputed)	N
1089	chr15	66067776	66067777	rs28498859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs28498859-?	NR	9E-242				NR [~ 8900000] (imputed)	N
1089	chr15	66070692	66070693	rs2572207	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	15q22.31	NR	rs2572207-?	NR	1E-10				NR [2500000] (imputed)	N
1089	chr15	66070692	66070693	rs2572207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs2572207-T	0.2406	8E-76		0.07631472	[0.068-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr15	66070692	66070693	rs2572207	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q22.31	PTPLAD1, DENND4A	rs2572207-C	0.74	3E-9	(EA, MCV)	0.153	[0.096-0.210] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1089	chr15	66074027	66074028	rs2437145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q22.31		rs2437145-T	NR	1E-188		0.0666	[0.062-0.071] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1089	chr15	66074027	66074028	rs2437145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	15q22.31		rs2437145-T	0.70891	9E-43		0.0546767	[0.047-0.062] unit decrease	Illumina [13476299] (imputed)	N
1089	chr15	66074027	66074028	rs2437145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs2437145-T	0.328305	1E-233				Affymetrix, Illumina [24246363] (imputed)	N
1089	chr15	66075871	66075872	rs2414884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs2414884-T	0.4266	3E-49		0.05271687	[0.046-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1089	chr15	66081847	66081848	rs11326570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs11326570-T	0.2516	5E-17		0.03509589	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	15q22.31		rs11857609-C	0.291999	5E-16		0.0321688	[0.024-0.04] unit increase	Illumina [13477028] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	15q22.31	NR	rs11857609-T	0.705707	4E-23		0.044676	[0.036-0.054] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	15q22.31	NR	rs11857609-T	0.705721	8E-35		0.055796	[0.047-0.065] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs11857609-?	NR	3E-21		0.04421	[0.035-0.053] unit increase novel	Illumina [6108953] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs11857609-?	NR	8E-11		0.03042	[0.021-0.04] unit increase novel	Illumina [6108953] (imputed)	N
1089	chr15	66095269	66095270	rs11857609	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	15q22.31	DENND4A, RAB11A	rs11857609-?	NR	4E-28		0.05134	[0.042-0.06] unit increase novel	Illumina [6108953] (imputed)	N
1089	chr15	66097710	66097711	rs8027781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.31	RAB11A	rs8027781-A	0.568689	7E-12		0.020247182	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr15	66097710	66097711	rs8027781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q22.31	RAB11A	rs8027781-A	0.568776	1E-28		0.0573723	[0.053-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr15	66097710	66097711	rs8027781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q22.31	RAB11A	rs8027781-A	0.568801	1E-36		0.037829593	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1089	chr15	66097710	66097711	rs8027781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	15q22.31	NR	rs8027781-C	0.731976	2E-14		0.034406	[0.026-0.043] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1089	chr15	66098057	66098058	rs11315539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	15q22.31	RAB11A	rs11315539-C	0.7576	1E-52		0.06372744	[0.056-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
1090	chr15	66206160	66206161	rs150945752	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	15q22.31	MEGF11	rs150945752-T	0.318	1E-12		0.03		Illumina [243345]	N
1090	chr15	66215919	66215920	rs11638908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs11638908-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1090	chr15	66245961	66245962	rs78147199	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q22.31		rs78147199-G	0.955	1E-26		0.29	[0.23-0.34] % increase	Affymetrix [NR] (imputed)	N
1090	chr15	66284912	66284913	rs28607847	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels x season interaction	339,673 European ancestry individuals	NA	15q22.31		rs28607847-?	NR	2E-8		5.661	z score decrease	NR [6098063] (imputed)	N
1090	chr15	66319805	66319806	rs61310892	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	15q22.31	NR	rs61310892-A	NR	5E-6	(Hispanic)	10.02	[5.8-14.25] unit increase	Affymetrix [14000000] (imputed)	N
1091	chr15	66331027	66331028	rs117609724	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MEGF11	rs117609724-?	NR	5E-11	(female)	2.56675	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1091	chr15	66360841	66360842	rs1369159	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q22.31	MEGF11	rs1369159-C	0.420399	2E-8		0.00787534	[0.0051-0.0106] unit increase	Affymetrix [12370749]	N
1091	chr15	66360841	66360842	rs1369159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.31		rs1369159-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1091	chr15	66365219	66365220	rs7164067	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q22.31	NR	rs7164067-A	0.594	9E-10		0.00678209	[0.0046-0.009] unit decrease	NR [9732723] (imputed)	N
1092	chr15	66456247	66456248	rs899084	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	15q22.31	NR	rs899084-C		3E-6		0.415	[0.23-0.6] SD units decrease	NR [10700000] (imputed)	N
1092	chr15	66457316	66457317	rs1545747	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	15q22.31	NR	rs1545747-G		2E-7		0.4776	[0.3-0.66] SD units increase	NR [10700000] (imputed)	N
1092	chr15	66457316	66457317	rs1545747	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	15q22.31	NR	rs1545747-G		5E-7		0.4582	[0.28-0.64] SD units increase	NR [10700000] (imputed)	N
1092	chr15	66457316	66457317	rs1545747	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	15q22.31	NR	rs1545747-G	NR	1E-6		0.3004	[0.16-0.44] SD units increase	NR [10700000] (imputed)	N
1092	chr15	66471327	66471328	rs62009887	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	15q22.31		rs62009887-C	0.012791	6E-7		2.2207417	NR	Affymetrix [7846216] (imputed)	N
1092	chr15	66501375	66501376	rs118122709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs118122709-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1092	chr15	66503583	66503584	rs113182412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.31	NR	rs113182412-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1092	chr15	66529935	66529936	rs4776768	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	15q22.31	MEGF11	rs4776768-T	0.283	4E-8		0.025351532	[0.016-0.034] unit decrease	NR [NR]	N
1092	chr15	66580852	66580853	rs7170930	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	15q22.31	MGC4562	rs7170930-?		5E-6				Affymetrix, Illumina [1348798]	N
1093	chr15	66589954	66589955	rs72748330	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q22.31	Intergenic	rs72748330-A	0.0765	8E-9	(MTAG)	0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1093	chr15	66590036	66590037	rs16949788	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q22.31	DIS3L-MAP2K1	rs16949788-T	0.91	2E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
1093	chr15	66590036	66590037	rs16949788	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q22.31	DIS3L-MAP2K1	rs16949788-T	0.91	1E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1093	chr15	66590447	66590448	rs35192697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q22.31	Intergenic	rs35192697-T	0.0787	7E-12	(MTAG)	0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1093	chr15	66593467	66593468	rs76095247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.31	NR	rs76095247-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1093	chr15	66593467	66593468	rs76095247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.31		rs76095247-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1093	chr15	66609680	66609681	rs11309737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q22.31	DIS3L, RP11-352G18.2	rs11309737-T	0.754124	4E-10		0.016408633	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr15	66612964	66612965	rs17851970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q22.31	DIS3L	rs17851970-C	0.261227	2E-12		0.017940253	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr15	66624853	66624854	rs8032684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q22.31	DIS3L	rs8032684-G	0.604829	1E-10		0.0141213	[0.01-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr15	66624853	66624854	rs8032684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q22.31	DIS3L	rs8032684-G	0.604815	1E-10		0.014601644	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr15	66663260	66663261	rs60180747	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	15q22.31	MAP2K1, TIPIN	rs60180747-C	0.26	1E-10		1.23	1.16-1.32	Illumina [9210350] (imputed)	N
1093	chr15	66678172	66678173	rs111584879	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q22.31	TIPIN	rs111584879-T	0.761347	5E-8		0.00878936	[0.0056-0.0119] unit increase	Affymetrix [12370749]	N
1093	chr15	66704448	66704449	rs2053005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q22.31	Intergenic	rs2053005-G	0.9219	7E-13		0.0303	[0.022-0.039] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1093	chr15	66709385	66709386	rs7168238	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q22.31	NR	rs7168238-C	0.0743	2E-8		1.066	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr15	66716105	66716106	rs112747606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q22.31	NR	rs112747606-T	0.226342	7E-13		0.017049	[0.012-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1094	chr15	66728309	66728310	rs78136741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q22.31		rs78136741-G	NR	6E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1094	chr15	66728950	66728951	rs11637556	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	15q22.31	NR	rs11637556-?	NR	2E-7		1.0985	[1.0606-1.1377]	Illumina [7437091] (imputed)	N
1094	chr15	66741386	66741387	rs11629783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q22.31	NA	rs11629783-C	0.772	1E-12		0.0143	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1094	chr15	66764641	66764642	rs112293876	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	15q22.31	MAP2K1	rs112293876-C	0.29	4E-10		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
1094	chr15	66773276	66773277	rs55905802	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	15q22.31	NR	rs55905802-T	NR	7E-6		0.7148	NR	Illumina [at least 560000] (imputed)	N
1094	chr15	66788659	66788660	rs11636407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs11636407-T	0.222338	1E-10				Affymetrix, Illumina [17210439] (imputed)	N
1094	chr15	66797491	66797492	rs3087660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.31	NR	rs3087660-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1094	chr15	66821249	66821250	rs11071896	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q22.31	NR	rs11071896-G	0.25	1E-9		0.001657	[0.0011-0.0022] unit increase	Affymetrix [NR] (imputed)	N
1094	chr15	66821249	66821250	rs11071896	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	15q22.31	ZWILCH	rs11071896-A	0.7501	6E-10		0.0125	[0.0086-0.0164] unit increase	Illumina [246328]	N
1094	chr15	66821249	66821250	rs11071896	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	15q22.31	TIPIN, MAP2K1	rs11071896-G	0.26	8E-13		1.19	[1.14-1.25]	Illumina [at least 371504] (imputed)	N
1094	chr15	66821676	66821676	rs370654105	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q22.31	NR	rs370654105-C	0.754067	1E-11		0.0086851	[0.006-0.0114] unit increase	Affymetrix [16582621] (imputed)	N
1094	chr15	66821676	66821676	rs370654105	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q22.31	NR	rs370654105-C	0.754067	3E-7		0.00705895	[0.0042-0.0099] unit increase	Affymetrix [16582614] (imputed)	N
1094	chr15	66835703	66835704	rs74634457	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	15q22.31	NR	rs74634457-G	NR	8E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1094	chr15	66839281	66839282	rs76428668	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q22.31	NR	rs76428668-T	0.750268	9E-24		0.0092838	[0.0074-0.0112] unit increase	Affymetrix [16582909] (imputed)	N
1094	chr15	66839281	66839282	rs76428668	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q22.31	NR	rs76428668-T	0.750268	2E-11		0.00685759	[0.0047-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1095	chr15	66869071	66869072	rs7178615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs7178615-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1095	chr15	66869071	66869072	rs7178615	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q22.31	RP11-321F6.1	rs7178615-A	0.37	3E-10		0.179	[0.12-0.24] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1095	chr15	66872113	66872114	rs4776793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q22.31		rs4776793-T	NR	4E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1095	chr15	66872113	66872114	rs4776793	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q22.31	RP11-321F6.1	rs4776793-C	0.645321	8E-14		0.0155501	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr15	66872113	66872114	rs4776793	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q22.31	MAP2K5	rs4776793-?	NR	4E-10		0.0171	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1095	chr15	66872265	66872266	rs4776794	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	15q22.31		rs4776794-?	NR	2E-6		1.03422	[1.02-1.05]	NR [688737]	N
1095	chr15	66878899	66878900	rs2245586	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q22.31	RP11-321F6.1	rs2245586-A	0.3175	5E-9		0.0131	[0.0088-0.0174] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1095	chr15	66882162	66882163	rs1822067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs1822067-A	0.636318	3E-12		0.016068676	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1095	chr15	66889052	66889053	rs2439355	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q22.31	NR	rs2439355-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1095	chr15	66891087	66891088	rs12439212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs12439212-T	0.491091	1E-9		0.013583294	[0.0092-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr15	66904791	66904792	rs148239723	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	15q22.31		rs148239723-G	NR	3E-6		4.5022	[2.67-6.33] unit increase	Illumina [NR] (imputed)	N
1095	chr15	66907542	66907543	rs1866750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs1866750-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1095	chr15	66910294	66910295	rs12909646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs12909646-G	0.418746	9E-13				Affymetrix, Illumina [24588908] (imputed)	N
1095	chr15	66920494	66920495	rs77861730	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	15q22.31	NR	rs77861730-?		4E-6		23.8526	[13.8-33.91] unit increase	NR [NR] (imputed)	N
1095	chr15	66921962	66921963	rs4776806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs4776806-C	0.366072	2E-10		0.014721536	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr15	66922894	66922895	rs893907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q22.31		rs893907-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1095	chr15	66922945	66922946	rs2469096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q22.31	NR	rs2469096-G	0.480388	3E-13		0.013536	[0.0099-0.0172] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1095	chr15	66922945	66922946	rs2469096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q22.31	NR	rs2469096-G	0.480347	5E-11		0.012567	[0.0088-0.0163] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1095	chr15	66923216	66923217	rs16950081	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	15q22.31	intergenic	rs16950081-?	NR	1E-7	(Anti-?2GPI IgG, 99th percentile)	2.1777	[1.38-2.98]	Affymetrix [at least 662405]	N
1095	chr15	66932934	66932935	rs74694425	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	15q22.31	NR	rs74694425-G		8E-6		0.4077	[0.23-0.59] SD units decrease	NR [10700000] (imputed)	N
1095	chr15	66932934	66932935	rs74694425	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	15q22.31	NR	rs74694425-G	NR	4E-6		0.2689	[0.13-0.41] SD units decrease	NR [10700000] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q22.31		rs1440371-A	NR	1E-9		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q22.31		rs1440371-A	NR	1E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q22.31		rs1440371-A	NR	1E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q22.31		rs1440371-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q22.31		rs1440371-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1095	chr15	66941083	66941084	rs1440371	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q22.31	LINC01160	rs1440371-A	0.2827	2E-9		0.217	[0.15-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
1095	chr15	66942092	66942093	rs8023793	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	15q22.31	NR	rs8023793-A	NR	1E-6		1.031	[1.02-1.04]	Affymetrix, Illumina [29235255] (imputed)	N
1095	chr15	66942092	66942093	rs8023793	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	15q22.31	NR	rs8023793-A	0.608	1E-9		1.116	[1.08-1.16]	Affymetrix, Illumina [10186136] (imputed)	N
1095	chr15	66942092	66942093	rs8023793	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	15q22.31	intergenic	rs8023793-A	0.569	3E-11		1.114	NR	Illumina [7742602] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs8030097-G	0.809829	2E-11		0.018999439	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs8030097-G	0.809849	8E-14		0.021201182	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs8030097-G	0.809846	2E-13		0.020912515	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs8030097-G	0.818407	1E-21				Affymetrix, Illumina [24653286] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q22.31	NR	rs8030097-G	0.809827	1E-23		0.023816	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs8030097-G	0.817395	3E-21				Affymetrix, Illumina [24558453] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q22.31	NR	rs8030097-G	0.809829	1E-22		0.023265	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1095	chr15	66943403	66943404	rs8030097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs8030097-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1095	chr15	66943984	66943985	rs12911761	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.31	NR	rs12911761-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1095	chr15	66944221	66944221	rs11377084	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	15q22.31	RP11-321F6.1	rs11377084-TA	0.5596	9E-10		0.0222333	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1095	chr15	66947105	66947106	rs4776813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q22.31	RP11-321F6.1	rs4776813-T	0.421101	2E-9		0.013686151	[0.0092-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr15	66979933	66979934	rs2439423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs2439423-T	0.799019	1E-10				Affymetrix, Illumina [22063850] (imputed)	N
1096	chr15	66983981	66983982	rs2439411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	15q22.31		rs2439411-A	NR	7E-9		0.1036	[0.069-0.139] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1096	chr15	66985126	66985127	rs78850189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q22.31		rs78850189-G	0.180524	2E-10		0.018854475	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1096	chr15	66987826	66987827	rs58683410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q22.31		rs58683410-T	NR	4E-13		0.0132	[0.0097-0.0167] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1096	chr15	66991463	66991464	rs57989199	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q22.31	SMAD6	rs57989199-G		1E-13		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1096	chr15	66992426	66992427	rs76132480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q22.31		rs76132480-T	0.109997	6E-9		0.0193896	[0.013-0.026] unit decrease	Illumina [13479295] (imputed)	N
1096	chr15	66992426	66992427	rs76132480	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q22.31	LINC01169, SMAD6	rs76132480-?	NR	3E-11		0.031295512	[0.022-0.041] unit decrease	Illumina [27896057] (imputed)	N
1096	chr15	66992820	66992821	rs8042545	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q22.31	LCTL, SMAD6	rs8042545-?		2E-12				Affymetrix, Illumina [NR] (imputed)	N
1096	chr15	66994237	66994238	rs2278601	30087447	Aubart M	2018-08-07	Eur J Hum Genet	Association of modifiers and other genetic factors explain Marfan syndrome clinical variability.	Severe aortic features in Marfan syndrome	51 European ancestry cases, 47 European ancestry controls	NA	15q22.31	LCTL, SMAD6	rs2278601-?	NR	8E-6		4.1	[NR]	Illumina [at least 701570] (imputed)	N
1096	chr15	66998856	66998857	rs76912608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q22.31		rs76912608-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1096	chr15	66999094	66999095	rs62005623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q22.31	SMAD6	rs62005623-T	0.247956	6E-9		0.0200759	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr15	66999094	66999095	rs62005623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q22.31	SMAD6	rs62005623-T	0.247948	2E-9		0.015333599	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr15	66999615	66999615	rs5813399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.31	SMAD6	rs5813399-CT	0.2402	1E-9		0.016076569	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr15	66999615	66999615	rs5813399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q22.31	SMAD6	rs5813399-CT	0.240202	6E-12		0.017984934	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr15	66999615	66999615	rs5813399	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q22.31	NR	rs5813399-CT	0.241362	6E-15		0.0611885	[0.046-0.077] unit increase	Affymetrix [17914406] (imputed)	N
1096	chr15	66999827	66999828	rs3809569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q22.31	NR	rs3809569-A	0.754101	5E-13		0.015915	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1096	chr15	67000116	67000117	rs3809570	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q22.31	NR	rs3809570-?	NR	2E-13		0.18822	[0.14-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1096	chr15	67000116	67000117	rs3809570	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q22.31	NR	rs3809570-?	NR	1E-10	(male)	0.26075	[0.18-0.34] unit increase	Affymetrix [7794483] (imputed)	N
1096	chr15	67007017	67007018	rs12594720	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q22.31	SMAD3	rs12594720-C	0.7218	5E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1096	chr15	67007812	67007813	rs4776316	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q22.31	NR	rs4776316-A	0.73	1E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1096	chr15	67008736	67008737	rs2278604	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q22.31	SMAD6	rs2278604-A	0.2684	7E-40		0.0285	[0.024-0.033] unit increase	Affymetrix [18391927] (imputed)	N
1096	chr15	67011945	67011946	rs2119260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q22.31	SMAD6	rs2119260-T	NR	3E-13		0.0247075	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
1096	chr15	67011945	67011946	rs2119260	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q22.31	NR	rs2119260-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1096	chr15	67011945	67011946	rs2119260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q22.31		rs2119260-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1096	chr15	67022311	67022312	rs2469082	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q22.31	NR	rs2469082-C	0.697906	3E-8		0.0591505	[0.038-0.08] unit decrease	Affymetrix [21375087] (imputed)	N
1096	chr15	67025402	67025403	rs2439386	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	15q22.31	SMAD6	rs2439386-T	NR	3E-6		0.0367	unit decrease	Illumina [15409056] (imputed)	N
1096	chr15	67027301	67027302	rs6494597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.31		rs6494597-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q22.31	NR	rs1440372-C	0.73	1E-16		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q22.31	NR	rs1440372-C	0.73	5E-8				Affymetrix [2446094] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q22.31	NA	rs1440372-T	0.2666	5E-13		0.0137	[0.01-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q22.31	SMAD6	rs1440372-T	0.2874	7E-6		0.0177	[0.01-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	15q22.31	NR	rs1440372-T	0.294481057263378	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	15q22.31	NR	rs1440372-T	0.294481057263378	3E-10		0.023097303	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-C	0.7143	3E-7	(men)	0.0277	[0.017-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-C	0.7142	3E-11		0.0247	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-C	0.7114	9E-6	(women)	0.0219	[0.012-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-C	0.7114	1E-6	(EA, men)	0.0266	[0.016-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-C	0.7097	1E-10	(EA)	0.0244	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033150	67033151	rs1440372	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.31	SMAD6	rs1440372-T	0.2903	8E-9	(EA)	0.0213	[0.014-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1096	chr15	67033659	67033659	rs761155390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q22.31	SMAD6	rs761155390-GCCTCAAACCCCAC	NR	4E-10		0.0193588	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1096	chr15	67034811	67034812	rs1866745	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	15q22.31	SMAD6	rs1866745-A	0.35	4E-10		1.09	[1.06-1.12]	Affymetrix [84000000] (imputed)	N
1096	chr15	67036061	67036062	rs1440374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q22.31		rs1440374-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1096	chr15	67036440	67036441	rs7179372	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q22.31	SMAD6	rs7179372-A	0.2063	6E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1096	chr15	67044942	67044943	rs8040232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs8040232-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1096	chr15	67044942	67044943	rs8040232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.31		rs8040232-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1096	chr15	67054072	67054073	rs7180265	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.31	LCTL	rs7180265-?	NR	8E-6	(PC 34:2)	0.1665779	[0.094-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1096	chr15	67066562	67066563	rs11858577	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	15q22.31	SMAD6	rs11858577-T	0.08	9E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1097	chr15	67114881	67114882	rs116789945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.31	NR	rs116789945-A	0.01045	4E-13	(CYP3A4)	4.31	NR unit decrease	Illumina [1671387] (imputed)	N
1097	chr15	67114881	67114882	rs116789945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q22.31	NR	rs116789945-A	0.01045	2E-15	(CYP3A5)	0.4329	NR unit decrease	Illumina [1671387] (imputed)	N
1097	chr15	67146199	67146200	rs181269956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.31	NR	rs181269956-G	0.0105432	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
1097	chr15	67149197	67149198	rs11858857	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.31	LOC102723481	rs11858857-G	0.924478	1E-10		0.0227628	[0.016-0.03] unit decrease	NR [13737936] (imputed)	N
1097	chr15	67151256	67151257	rs72741014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.31		rs72741014-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1097	chr15	67151256	67151257	rs72741014	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.31		rs72741014-?	NR	2E-11		0.0177939	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1097	chr15	67155068	67155069	rs4589502	24658283	Zhang R	2014-03-22	Carcinogenesis	A genome-wide gene-environment interaction analysis for tobacco smoke and lung cancer susceptibility.	Lung cancer (smoking interaction)	1,506 Han Chinese ancestry smoker cases, 825 Han Chinese ancestry non-smoker cases, 1,309 Han Chinese ancestry smoker controls, 1,768 Han Chinese ancestry non-smoker controls	912 Han Chinese ancestry smoker cases, 622 Han Chinese ancestry non-smoker cases, 572 Han Chinese ancestry smoker controls, 917 Han Chinese ancestry non-smoker controls	15q22.31	SMAD6, SMAD3	rs4589502-T		4E-6		1.55	[1.29-1.87]	Affymetrix [591370]	N
1097	chr15	67166006	67166007	rs181000569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q22.31		rs181000569-A	NR	2E-13		0.0666	[0.049-0.084] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1097	chr15	67166006	67166007	rs181000569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q22.31		rs181000569-A	0.0110440000000001	2E-13		0.07793605	[0.057-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr15	67166006	67166007	rs181000569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q22.31		rs181000569-A	0.011052	2E-13		0.07804148	[0.057-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr15	67166006	67166007	rs181000569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q22.31		rs181000569-A	0.011043	4E-14		0.08045528	[0.06-0.101] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr15	67166006	67166007	rs181000569	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.31		rs181000569-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1097	chr15	67173255	67173256	rs182173660	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q22.31	NR	rs182173660-?	NR	7E-6		4.48	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1097	chr15	67180919	67180920	rs4776851	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	15q22.31	intergenic	rs4776851-A	0.031	6E-6		6.06	[2.776-13.23]	Illumina [7585874] (imputed)	N
1097	chr15	67214107	67214108	rs898889	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q22.32	SMAD3	rs898889-?	NR	7E-6	(serine)	0.19439718	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1097	chr15	67228084	67228085	rs266375	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	15q22.32	NR	rs266375-C	0.23	1E-7		1.32	[1.19-1.46]	Illumina [12683648] (imputed)	N
1098	chr15	67253093	67253097	rs150164035	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	15q22.32	NR	rs150164035-GCCCA		9E-6		0.2448	[0.14-0.35] SD units increase	NR [10700000] (imputed)	N
1098	chr15	67260237	67260238	rs1874832	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q22.32	NR	rs1874832-G	0.1681	3E-9		0.0382	[0.025-0.051] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1098	chr15	67266002	67266003	rs62005949	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.32	NR	rs62005949-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1098	chr15	67274891	67274892	rs146579684	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	15q22.32	NR	rs146579684-A	0.007107	3E-6		0.8459	[0.49-1.2] unit decrease	Illumina [10677593] (imputed)	N
1098	chr15	67280927	67280928	rs28789220	30583557	Loohuis LM	2018-12-22	Genes (Basel)	The Alkaline Phosphatase (ALPL) Locus Is Associated with B6 Vitamer Levels in CSF and Plasma.	B6 vitamer levels (multivariate analysis)	493 European ancestry individuals	NA	15q22.32	LOC102723493	rs28789220-?		8E-7				Illumina [6260487] (imputed)	N
1098	chr15	67287429	67287430	rs266274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q22.32		rs266274-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1098	chr15	67310156	67310157	rs185072970	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	15q22.33	NR	rs185072970-?	NR	7E-6		0.6379	[0.37-0.91] unit increase	Illumina [at least 560000] (imputed)	N
1098	chr15	67316955	67316956	rs7162222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.33		rs7162222-?	NR	6E-22				NR [~ 8900000] (imputed)	N
1098	chr15	67336206	67336207	rs10438354	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q22.33	SMAD3	rs10438354-C	0.64975	5E-9		0.0119313	[0.0079-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
1098	chr15	67336206	67336207	rs10438354	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.33		rs10438354-?	NR	3E-12		0.0153085	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1098	chr15	67339184	67339185	rs11631381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q22.33	RP11-798K3.2	rs11631381-A	NR	8E-9		0.0163893	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1098	chr15	67343566	67343567	rs35597327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	15q22.33		rs35597327-A	NR	7E-9		0.0338	[0.022-0.045] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1098	chr15	67347685	67347686	rs422342	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	15q22.33	SMAD6, SMAD3, MAP2K5	rs422342-?		2E-6		2.865	[1.8-3.93] unit increase	Illumina [~ 4900000] (imputed)	N
1098	chr15	67356422	67356423	rs11635753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.33	SMAD3	rs11635753-C	0.235429	6E-10		0.016401801	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr15	67362993	67362994	rs17291497	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.33	NR	rs17291497-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1098	chr15	67363572	67363573	rs11632964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q22.33		rs11632964-T	NR	4E-8		0.0489	[0.031-0.066] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1098	chr15	67364319	67364320	rs4776879	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q22.33	SMAD3	rs4776879-?	NR	2E-10		0.019121077	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
1098	chr15	67366487	67366488	rs12908498	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	15q22.33		rs12908498-C	0.5384	2E-16		1.0830704	[1.062673975-1.103858369]	Affymetrix, Illumina [NR] (imputed)	N
1098	chr15	67367705	67367706	rs1498507	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.33	SMAD3	rs1498507-A	0.53706	5E-15		0.0145596	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
1098	chr15	67367705	67367706	rs1498507	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.33	NR	rs1498507-C	0.462711	4E-9		0.0183003	[0.012-0.024] unit decrease	NR [19129689] (imputed)	N
1098	chr15	67368658	67368659	rs28613758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	15q22.33		rs28613758-T	NR	2E-13		0.109	[0.08-0.138] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
1098	chr15	67370388	67370389	rs12901071	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	15q22.33	SMAD3	rs12901071-A	0.68	2E-6		1.0397705	[1.023393432-1.056409612]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1098	chr15	67370388	67370389	rs12901071	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	15q22.33	NR	rs12901071-A	0.37	3E-8		1.0747372	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1098	chr15	67370505	67370506	rs12901372	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q22.33	NR	rs12901372-G	0.469229	7E-11		0.0451567	[0.032-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
1098	chr15	67370505	67370506	rs12901372	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	15q22.33	NR	rs12901372-C	0.53	3E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1098	chr15	67370505	67370506	rs12901372	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	15q22.33	SMAD3	rs12901372-C	NR	6E-11	(additive)	1.08	[1.05-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
1099	chr15	67371243	67371244	rs28617673	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.33	NR	rs28617673-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67371243	67371244	rs28617673	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs28617673-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67371243	67371244	rs28617673	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs28617673-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67371243	67371244	rs28617673	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	15q22.33	SMAD3	rs28617673-T	0.110027	5E-13		1.0750384	[1.06-1.09]	Affymetrix [8274727] (imputed)	N
1099	chr15	67371419	67371420	rs12592283	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	15q22.33	NR	rs12592283-?	NR	5E-9	(conditional)			Affymetrix [15688218] (imputed)	N
1099	chr15	67374468	67374468	rs11427899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.33	SMAD3	rs11427899-CG	0.607994	2E-12		0.01640917	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67381132	67381133	rs148586558	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	15q22.33	NR	rs148586558-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67382139	67382140	rs80256914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q22.33	NR	rs80256914-G	NR	2E-10		0.0372	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr15	67384875	67384876	rs79458729	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	15q22.33		rs79458729-?	NR	1E-7		2.21862	[1.92-2.51]	NR [663083]	N
1099	chr15	67385468	67385469	rs1465841	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	15q22.33	SMAD3, AAGAB, IQCH, IQCH-AS1, SMAD6, LINC01169	rs1465841-G	0.56012	6E-9		1.03765	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
1099	chr15	67401465	67401466	rs2118611	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q22.33	SMAD3	rs2118611-T	0.798288	2E-8		0.021797	[0.014-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1099	chr15	67402823	67402824	rs56324967	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q22.33	NR	rs56324967-C	0.6602	1E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1099	chr15	67408298	67408298	rs151090251	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q22.33	NR	rs151090251-GGACTTCTGTAGAGA	0.0524	2E-6	(EA)	0.0719	[0.042-0.101] unit increase	Illumina [~ 11800000] (imputed)	N
1099	chr15	67409909	67409910	rs35887379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	15q22.33		rs35887379-T	NR	5E-9		0.0557	[0.037-0.074] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1099	chr15	67413623	67413624	rs117683492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q22.33	SMAD3	rs117683492-A	0.018354	1E-19		0.07486373	[0.059-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67413623	67413624	rs117683492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.33	SMAD3	rs117683492-A	0.018354	5E-19		0.073957026	[0.058-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67413623	67413624	rs117683492	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	15q22.33	SMAD3, AAGAB, IQCH, IQCH-AS1, SMAD6, C15orf61	rs117683492-A	0.01867	4E-7		1.12276	[1.07-1.17]	Affymetrix [32463443] (imputed)	N
1099	chr15	67413623	67413624	rs117683492	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	15q22.33	SMAD3	rs117683492-A	0.018	2E-6		1.15	[1.09-1.21]	Affymetrix [9000000] (imputed)	N
1099	chr15	67413623	67413624	rs117683492	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q22.33	SMAD3	rs117683492-A	NR	1E-8		1.156	[1.11-1.21]	Affymetrix [9000000] (imputed)	N
1099	chr15	67414910	67414911	rs4776341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q22.33		rs4776341-?	NR	4E-43				NR [~ 8900000] (imputed)	N
1099	chr15	67418390	67418391	rs4776342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q22.33	NR	rs4776342-A	NR	5E-8		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1099	chr15	67418390	67418391	rs4776342	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q22.33	NR	rs4776342-A	0.773	2E-6	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1099	chr15	67420679	67420680	rs1545161	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q22.33	SMAD3	rs1545161-A	0.524115	3E-43		0.0256494	[0.022-0.029] unit increase	NR [13737936] (imputed)	N
1099	chr15	67427188	67427189	rs11631380	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	15q22.33	SMAD3	rs11631380-T	0.311342	1E-6		0.0403	[0.024-0.056] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1099	chr15	67427188	67427189	rs11631380	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	15q22.33	SMAD3	rs11631380-T	0.311342	2E-8		0.0409	[0.027-0.055] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1099	chr15	67427896	67427897	rs28587205	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.33		rs28587205-?	NR	3E-41		0.0270238	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1099	chr15	67427896	67427897	rs28587205	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q22.33	SMAD3	rs28587205-A	0.530533	2E-8	(women)	0.0258661	[0.017-0.035] unit increase	NR [17166351] (imputed)	N
1099	chr15	67427896	67427897	rs28587205	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q22.33	SMAD3	rs28587205-A	0.528349	3E-10		0.0206906	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
1099	chr15	67432460	67432460	rs34728056	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q22.33		rs34728056-?	NR	7E-42		0.0274379	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1099	chr15	67437862	67437863	rs17293443	27132594	Mbarek H	2016-05-05	Am J Hum Genet	Identification of Common Genetic Variants Influencing Spontaneous Dizygotic Twinning and Female Fertility.	Spontaneous dizygotic twinning	1,980 European ancestry mothers of spontaneous dizygotic twins, 12,953 European ancestry controls	3,597 Icelandic ancestry mothers of spontaneous dizygotic twins, 297,348 Icelandic ancestry controls	15q22.33	SMAD3	rs17293443-C	0.21	6E-11		1.15	1.07-1.23	Affymetrix, Illumina, Perlegen [at least 7903594] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	15q22.33		rs72743461-A	NR	8E-25		0.1122	[0.091-0.134] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	15q22.33		rs72743461-A	NR	2E-13		0.0893	[0.066-0.113] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	15q22.33		rs72743461-A	NR	2E-26		0.1096	[0.089-0.13] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q22.33		rs72743461-A	NR	4E-23		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	15q22.33		rs72743461-A	NR	5E-33		0.1074	[0.09-0.125] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q22.33	SMAD3	rs72743461-C	0.785088	5E-11		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	15q22.33	SMAD3, AAGAB, IQCH, IQCH-AS1, SMAD6, C15orf61	rs72743461-A	0.23712	1E-45		1.1093	[1.09-1.13]	Affymetrix [32463443] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	15q22.33	NR	rs72743461-?	NR	7E-31				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs72743461-?	NR	3E-21				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	15q22.33	SMAD3	rs72743461-A	0.236788	4E-45		1.1071587	[1.09-1.12]	Affymetrix [8274727] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	15q22.33	SMAD3	rs72743461-A	0.237	7E-45				Affymetrix [15688218] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	15q22.33	NR	rs72743461-A	0.237	5E-37		1.084	[1.071-1.097]	Affymetrix [15688218] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	15q22.33	SMAD3	rs72743461-A	0.236679	5E-14		0.09897992	[0.073-0.125] unit increase	Affymetrix [7288503] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	15q22.33	SMAD3	rs72743461-A	0.23821	2E-25		0.11014765	[0.089-0.131] unit increase	Affymetrix [7288503] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	15q22.33	SMAD3	rs72743461-A	0.231	3E-9		1.07	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	15q22.33	SMAD3	rs72743461-?	NR	6E-63		1.152	[1.13-1.17]	Affymetrix [9000000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	15q22.33	SMAD3	rs72743461-?	NR	1E-24		1.087	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q22.33	SMAD3	rs72743461-A	NR	3E-46		1.121	[1.11-1.14]	Affymetrix [9000000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	15q22.33		rs72743461-?	NR	2E-46				NR [~ 8900000] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	15q22.33	SMAD3	rs72743461-A	0.236	5E-14		1.14	[1.11-1.19]	Affymetrix [33771858] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q22.33	SMAD3	rs72743461-A	0.2211	6E-17		0.0576	[0.044-0.071] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	15q22.33	SMAD3	rs72743461-C	0.783	5E-12		1.07	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1099	chr15	67441749	67441750	rs72743461	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q22.33	SMAD3	rs72743461-C	0.8	1E-7	(additive model)	1.07	[1.05-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	15q22.33	SMAD3	rs17293632-T	0.2373	7E-32		1.06	[1.05-1.07]	Affymetrix, Illumina [8494288] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q22.33	NR	rs17293632-T	NR	1E-12		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q22.33	SMAD3	rs17293632-T	0.236496	2E-33		0.031639926	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.33	SMAD3	rs17293632-T	0.236477	1E-28		0.02932875	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q22.33	NR	rs17293632-T	0.202331	1E-33				Affymetrix, Illumina [19872809] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q22.33	NR	rs17293632-T	0.236264	9E-37		0.02962	[0.025-0.034] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	15q22.33	SMAD3	rs17293632-T	0.23	3E-70				NR [> 9500000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.33	NR	rs17293632-?	NR	4E-27				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	15q22.33	NR	rs17293632-T	0.2372	6E-25		1.074	[1.06-1.088]	Affymetrix [15688218] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	15q22.33	SMAD3	rs17293632-T	0.237	9E-16		1.109	[1.082-1.136]	Affymetrix [15688218] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.33		rs17293632-?	NR	3E-38				NR [~ 8900000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	15q22.33	SMAD3, SMAD6, AAGAB	rs17293632-T	0.26	9E-16		0.12	[0.1-0.14] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	15q22.33	SMAD3	rs17293632-?		2E-8				Illumina [9578670] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	15q22.33	SMAD3	rs17293632-?		3E-21				Illumina [9725440] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	15q22.33	SMAD3	rs17293632-?		2E-19				Illumina [9560910] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	15q22.33	SMAD3	rs17293632-?	NR	1E-16	(subset analysis)			Illumina [130052]	N
1099	chr15	67442595	67442596	rs17293632	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q22.33	NR	rs17293632-A	0.2364	1E-7	(EA)	1.0799718	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q22.33	NR	rs17293632-A	0.2364	3E-20	(EA)	1.1131175	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q22.33	NR	rs17293632-A	0.2364	4E-20	(EA)	1.1369898	[1.11-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	15q22.33	SMAD3	rs17293632-T	0.235	6E-16		1.067	[1.032-1.102]	Affymetrix, Illumina [1230000] (imputed)	N
1099	chr15	67442595	67442596	rs17293632	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	15q22.33	SMAD3	rs17293632-T	0.233	3E-19		1.12	[1.07-1.16]	Affymetrix, Illumina [953241] (imputed)	N
1099	chr15	67444746	67444747	rs10152544	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	15q22.33		rs10152544-?	NR	5E-13		0.93	[0.91-0.95]	Illumina [5170515] (imputed)	N
1099	chr15	67446784	67446785	rs744910	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	15q22.33	SMAD3	rs744910-G	0.49	4E-9		1.12	[1.09-1.16]	Illumina [582892]	N
1099	chr15	67447451	67447452	rs11634793	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q22.33	SMAD3	rs11634793-T	0.516079634471592	5E-6		0.0024416	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1099	chr15	67448362	67448363	rs56375023	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	15q22.33	SMAD3	rs56375023-A	0.237325868543686	3E-41		0.10345495	[0.088-0.119] unit increase	Affymetrix [35186738] (imputed)	N
1099	chr15	67448362	67448363	rs56375023	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	15q22.33	SMAD3	rs56375023-A	0.228719	5E-57		1.1204897	[1.10489925623644-1.13630020829068]	NR [9572556] (imputed)	N
1099	chr15	67448362	67448363	rs56375023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	15q22.33		rs56375023-?	NR	6E-32				NR [~ 8900000] (imputed)	N
1099	chr15	67448362	67448363	rs56375023	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	15q22.33	SMAD3	rs56375023-A	0.21	8E-32		1.073	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
1099	chr15	67448362	67448363	rs56375023	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	15q22.33	SMAD3	rs56375023-?	NR	2E-21		1.1148272	[1.09-1.14]	Illumina [13747813] (imputed)	N
1099	chr15	67449659	67449660	rs2033784	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	15q22.33	SMAD3, SMAD6, AAGAB	rs2033784-G	0.3	7E-15		1.1	[1.08-1.13]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1099	chr15	67449659	67449660	rs2033784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	15q22.33	SMAD3	rs2033784-G	0.2964	6E-10		0.02415304	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1099	chr15	67449659	67449660	rs2033784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	15q22.33	SMAD3	rs2033784-G	0.2964	5E-11		0.0255552	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1099	chr15	67450304	67450305	rs17228058	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q22.33	SMAD3	rs17228058-?	NR	1E-19		0.0594038	[0.047-0.072] unit decrease	Illumina [4804024] (imputed)	N
1099	chr15	67450304	67450305	rs17228058	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q22.33	SMAD3	rs17228058-A	0.781	4E-17		0.066	[0.05-0.082] unit increase	Affymetrix [7947838] (imputed)	N
1099	chr15	67450304	67450305	rs17228058	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	15q22.33	SMAD3	rs17228058-G	0.2353	1E-8		0.0789	[0.052-0.106] unit increase	Illumina [2400000] (imputed)	N
1099	chr15	67450892	67450893	rs7173698	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	15q22.33		rs7173698-A	0.703	7E-15				Affymetrix [10369434] (imputed)	N
1099	chr15	67451214	67451215	rs7174445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q22.33	SMAD3	rs7174445-G	0.2965	1E-10		0.02514888	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1099	chr15	67451214	67451215	rs7174445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	15q22.33	SMAD3	rs7174445-G	0.2967	4E-10		0.02449643	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1099	chr15	67454377	67454378	rs79483120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q22.33		rs79483120-G	NR	4E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	15q22.33	SMAD3	rs56062135-T	0.228	4E-10		1.29	[1.19-1.39]	Illumina [11310926] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	15q22.33	SMAD3	rs56062135-T	0.247	2E-9		0.029	[0.019-0.039] unit decrease	NR [NR] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	15q22.33	SMAD3	rs56062135-T	0.247	3E-9		0.029	[0.019-0.039] unit decrease	NR [7647814] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	15q22.33	SMAD3	rs56062135-C	0.81	5E-13		1.08	[1.05-1.11]	Illumina [5167567] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs56062135-?	NR	3E-33				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	15q22.33	SMAD3, SMAD6, AAGAB	rs56062135-T	0.237	3E-26		1.194	[1.156-1.234]	Affymetrix [10894596] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	15q22.33	SMAD3, SMAD6, AAGAB	rs56062135-T	0.237	6E-12		1.083	[1.058-1.108]	Affymetrix [10894596] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	15q22.33	SMAD3	rs56062135-?	NR	2E-22		1.16		NR [74888535] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	15q22.33	SMAD3	rs56062135-?	NR	3E-23		0.14842	[0.12-0.18] unit increase	Affymetrix [74888535] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	15q22.33	SMAD3	rs56062135-?	NR	6E-13		1.09	[1.06-1.12]	Affymetrix [74888535] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q22.33	SMAD3	rs56062135-T	0.2191	4E-17		0.0655	[0.05-0.081] unit decrease	NR [8041861] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	15q22.33	SMAD3	rs56062135-T	0.253	5E-9		1.24	1.16.1.34	Illumina [7100000] (imputed)	N
1099	chr15	67455629	67455630	rs56062135	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q22.33	SMAD3	rs56062135-C	0.79	5E-9	(additive model)	1.07	[1.05-1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1099	chr15	67457484	67457485	rs2289261	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	15q22.33	SMAD3	rs2289261-C	0.683	3E-9		1.23	1.15-1.32	Illumina [7100000] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q22.33		rs35874463-G	NR	3E-70		0.0624	[0.056-0.069] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs35874463-G	NR	1E-23		0.0658854	[0.053-0.079] unit increase	Affymetrix [321114] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q22.33	SMAD3	rs35874463-G	NR	3E-20		0.0556214	[0.044-0.067] unit increase	Affymetrix [321016] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q22.33	SMAD3	rs35874463-G	NR	4E-25		0.0677666	[0.055-0.081] unit increase	Affymetrix [323123] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q22.33	SMAD3	rs35874463-A	0.9423	3E-12		0.0273	[0.02-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	15q22.33	SMAD3	rs35874463-A	0.942	7E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [18391927] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	15q22.33	SMAD3	rs35874463-A	0.942	9E-6		0.03	[0.018-0.042] unit decrease	Affymetrix [18391927] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.33	NR	rs35874463-?	NR	1E-30				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q22.33	SMAD3	rs35874463-G	0.0559981	3E-21	(females)	0.06427	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q22.33	SMAD3	rs35874463-G	0.0559981	2E-18		0.0472	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q22.33	SMAD3	rs35874463-G	0.0559981	6E-16		0.0464	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q22.33	SMAD3	rs35874463-G	0.0559981	1E-15	(females)	0.05697	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q22.33		rs35874463-?	NR	4E-117				NR [~ 8900000] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q22.33	SMAD3	rs35874463-A	0.9477	9E-7		0.0778	[0.047-0.109] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr15	67457697	67457698	rs35874463	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	15q22.33	SMAD3	rs35874463-?	NR	1E-11	(subset analysis)			Illumina [130052]	N
1099	chr15	67457839	67457840	rs56336520	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs56336520-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67458638	67458639	rs17228212	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	15q22.33	SMAD3	rs17228212-C	0.30	2E-7		1.21	[1.13-1.30]	Affymetrix [377857]	N
1099	chr15	67460008	67460009	rs11638064	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	15q22.33		rs11638064-?	NR	4E-6		0.264	[0.15-0.37] unit decrease	Illumina [5082878] (imputed)	N
1099	chr15	67460008	67460009	rs11638064	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q22.33	SMAD3	rs11638064-G		2E-8		0.168	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1099	chr15	67460756	67460757	rs11639295	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		15q22.33	SMAD3	rs11639295-C	0.706	3E-6		0.015	[0.0091-0.0209] dioptres increase	NR [5901671] (imputed)	N
1099	chr15	67460756	67460757	rs11639295	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	15q22.33	SMAD3	rs11639295-T	NR	9E-7		1.069	[1.042-1.095]	NR [5921785] (imputed)	N
1099	chr15	67463390	67463391	rs11071939	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q22.33	SMAD3	rs11071939-T	0.9286	8E-11		0.0039	[0.0027-0.0051] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1099	chr15	67463390	67463391	rs11071939	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q22.33	SMAD3	rs11071939-T	0.924	3E-10		0.0038	[0.0024-0.0052] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1099	chr15	67464290	67464291	rs72743477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q22.33		rs72743477-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1099	chr15	67464290	67464291	rs72743477	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	15q22.33	SMAD3	rs72743477-G	0.21	8E-11				Illumina [7347414] (imputed)	N
1099	chr15	67465546	67465547	rs72743481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q22.33	SMAD3	rs72743481-C	0.324489	7E-9		0.013758117	[0.0091-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67465546	67465547	rs72743481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q22.33		rs72743481-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	15q22.33	AAGAB, IQCH, SMAD3	rs12912010-T	NR	2E-26		0.312	[0.26-0.37] unit decrease	Affymetrix [7701190] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q22.33	SMAD3	rs12912010-?	NA	2E-19		2.47	[1.94-3] unit decrease	Affymetrix [5541230] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	15q22.33	SMAD3	rs12912010-T	0.2132	1E-10	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	15q22.33	SMAD3	rs12912010-T	0.2132	9E-8		0.1686	NR mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q22.33	SMAD3	rs12912010-T	0.2132	1E-7		2.5966	NR ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.33	NR	rs12912010-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.33	NR	rs12912010-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs12912010-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs12912010-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67467142	67467143	rs12912010	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	15q22.33	SMAD3	rs12912010-T	0.28	2E-12		2.52	[1.83-3.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1099	chr15	67467296	67467297	rs12912045	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	15q22.33	SMAD3	rs12912045-?	NR	6E-17		0.12	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1099	chr15	67467506	67467507	rs12913547	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	15q22.33		rs12913547-T	0.790561	7E-26		0.120174	[0.098-0.142] decrease	Affymetrix [11014269] (imputed)	N
1099	chr15	67467506	67467507	rs12913547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	15q22.33	NR	rs12913547-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67467506	67467507	rs12913547	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q22.33	SMAD3	rs12913547-T	0.7871	4E-14		0.124	[0.09-0.158] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1099	chr15	67467506	67467507	rs12913547	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q22.33	SMAD3	rs12913547-T	0.77	5E-10		0.08	[0.041-0.119] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1099	chr15	67468284	67468285	rs17294280	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	15q22.33	AAGAB, SMAD3	rs17294280-G	0.2484	6E-12		1.07	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1099	chr15	67468284	67468285	rs17294280	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q22.33	NR	rs17294280-G	0.26	3E-7		0.024	[0.014-0.034] unit decrease	Affymetrix [27624732] (imputed)	N
1099	chr15	67468284	67468285	rs17294280	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	15q22.33	SMAD3	rs17294280-?	NR	4E-8		1.053	[1.034-1.073]	Illumina [12845910] (imputed)	N
1099	chr15	67468284	67468285	rs17294280	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	15q22.33	SMAD3	rs17294280-G	0.23	4E-9		1.18	[1.11-1.25]	Illumina [up to 4972397] (imputed)	N
1099	chr15	67468524	67468525	rs35251008	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q22.33	SMAD3	rs35251008-A	0.7207	1E-11		0.099	[0.068-0.13] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1099	chr15	67469567	67469568	rs1470002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs1470002-A	NR	3E-10		0.0200535	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr15	67470207	67470208	rs893475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs893475-G	NR	1E-8		0.0186057	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr15	67474710	67474711	rs79545745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.33	NR	rs79545745-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475434	67475435	rs10152593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs10152593-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475434	67475435	rs10152593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q22.33		rs10152593-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1099	chr15	67475434	67475435	rs10152593	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q22.33	NR	rs10152593-T	0.295554	1E-12		0.0244017	[0.018-0.031] unit increase	NR [19129689] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	15q22.33	SMAD3, AAGAB, IQCH, IQCH-AS1, C15orf61, MAP2K5	rs10152595-C	0.75131	5E-19		1.0682961	[1.05-1.09]	Affymetrix [32463443] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q22.33	NR	rs10152595-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q22.33	NR	rs10152595-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	15q22.33	NR	rs10152595-C	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	15q22.33	NR	rs10152595-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	15q22.33	NR	rs10152595-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q22.33	NR	rs10152595-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	15q22.33	NR	rs10152595-C	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	15q22.33	AAGAB, IQCH, SMAD3	rs10152595-C	0.750997	1E-19		1.0673858	[1.05-1.08]	Affymetrix [8274727] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	15q22.33	NR	rs10152595-?	NR	4E-13	(conditional)			Affymetrix [15688218] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q22.33		rs10152595-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1099	chr15	67475487	67475488	rs10152595	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	15q22.33	NR	rs10152595-C	0.7507	4E-11		0.0152	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1099	chr15	67475764	67475764	rs34445740	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	15q22.33	SMAD3	rs34445740-?	NR	8E-20		1.076	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
1099	chr15	67475764	67475764	rs34445740	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	15q22.33	SMAD3	rs34445740-C	NR	5E-19		1.069	[1.06-1.08]	Affymetrix [9000000] (imputed)	N
1099	chr15	67476951	67476952	rs2289791	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q22.33	NR	rs2289791-T	0.247	2E-9		0.017725516	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1099	chr15	67476969	67476970	rs2289790	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	15q22.33	SMAD3	rs2289790-C	0.237487	9E-11		0.06937833	[0.048-0.09] unit decrease	Affymetrix [7288503] (imputed)	N
1099	chr15	67478645	67478645	rs778984966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q22.33	SMAD3	rs778984966-C	NR	6E-12		0.0251994	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1099	chr15	67478645	67478645	rs778984966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs778984966-C	NR	7E-13		0.0263073	[0.019-0.033] unit decrease	Affymetrix [127266] (imputed)	N
1099	chr15	67478645	67478645	rs778984966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs778984966-C	NR	1E-16		0.0300156	[0.023-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1099	chr15	67478645	67478645	rs778984966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q22.33	SMAD3	rs778984966-C	NR	1E-13		0.0268852	[0.02-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1099	chr15	67481247	67481248	rs3825977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.33	SMAD3	rs3825977-C	0.805374	4E-8	(24 ms)	0.0379831	[0.024-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1099	chr15	67481247	67481248	rs3825977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.33	SMAD3	rs3825977-C	0.805374	4E-8	(20 ms)	0.0385914	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1099	chr15	67481247	67481248	rs3825977	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q22.33	SMAD3	rs3825977-C	0.805374	2E-8	(22 ms)	0.0390392	[0.025-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1099	chr15	67483275	67483276	rs8025774	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		15q22.33	SMAD3	rs8025774-T	0.29	9E-13		20.87	[15.15-26.59] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1099	chr15	67483275	67483276	rs8025774	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		15q22.33	SMAD3	rs8025774-T	0.24	2E-6	(EA)	17.82	[10.55-25.09] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1099	chr15	67487548	67487549	rs10438355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q22.33		rs10438355-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1099	chr15	67491273	67491274	rs12917612	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q22.33	AAGAB	rs12917612-A	0.2295	2E-16		0.0228	[0.017-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
1099	chr15	67491273	67491274	rs12917612	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q22.33	AAGAB	rs12917612-A	0.2295	6E-7		0.0141	[0.0086-0.0196] unit increase	Affymetrix [19819130] (imputed)	N
1099	chr15	67491273	67491274	rs12917612	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q22.33	AAGAB	rs12917612-A	0.2295	8E-7		0.0136	[0.0081-0.0191] unit decrease	Affymetrix [19819130] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q22.33		rs7166081-A	0.77	3E-12				NR [NR] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q22.33		rs7166081-A	0.77	2E-20		0.016	% increase	NR [NR] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q22.33	AAGAB, SMAD3	rs7166081-A	0.768107	7E-10		0.016268386	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q22.33		rs7166081-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	15q22.33	NR	rs7166081-A	0.776	2E-16		0.0164	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	4E-6	(men)	0.0311	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	3E-7		0.0241	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	8E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	8E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	2E-10		0.0266	[0.018-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q22.33	SMAD3	rs7166081-A	0.7599	1E-9	(men)	0.0351	[0.024-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.33	SMAD3	rs7166081-A	0.7695	2E-9	(EA)	0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1099	chr15	67492300	67492301	rs7166081	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q22.33	SMAD3	rs7166081-A	0.7695	1E-8	(EA, men)	0.0321	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1099	chr15	67499476	67499477	rs11071940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q23		rs11071940-C	NR	1E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1100	chr15	67528373	67528374	rs7173826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q23	AAGAB	rs7173826-G	NR	4E-8		0.0183289	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1100	chr15	67528373	67528374	rs7173826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q23	AAGAB	rs7173826-G	NR	6E-9		0.0193774	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1100	chr15	67528373	67528374	rs7173826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q23	AAGAB	rs7173826-G	NR	2E-11		0.0221873	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1100	chr15	67528373	67528374	rs7173826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q23	AAGAB	rs7173826-G	NR	3E-9		0.0195852	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1100	chr15	67528373	67528374	rs7173826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q23		rs7173826-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1100	chr15	67531036	67531036	rs747719483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q23	AAGAB	rs747719483-ATTTT	0.262923	1E-9		0.016186591	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr15	67547300	67547301	rs3743347	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q23	NR	rs3743347-A	0.2351	2E-14		0.0519	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1100	chr15	67557672	67557673	rs8032868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q23		rs8032868-C	NR	6E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1100	chr15	67561354	67561355	rs12443279	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q23	SMAD3	rs12443279-G	0.3495	3E-8		5.54	NR z score decrease	Illumina [26237160] (imputed)	N
1100	chr15	67561597	67561598	rs67872952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	15q23		rs67872952-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1100	chr15	67562213	67562214	rs12901789	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q23	NR	rs12901789-A	0.7583	2E-11	(European)	0.049	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1100	chr15	67607899	67607900	rs11635391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q23	NR	rs11635391-G	NR	4E-9		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1100	chr15	67610950	67610951	rs12440869	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Peak velocity of the mitral A-wave	21,852 European ancestry individuals	14,787 European ancestry individuals	15q23	IQCH	rs12440869-T	0.26	1E-8		0.726	[0.48-0.98] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1100	chr15	67617038	67617038	rs561189291	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q23	IQCH	rs561189291-A	0.992	3E-6		0.3031	[0.18-0.43] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1101	chr15	67653681	67653682	rs72745470	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	15q23	SMAD3, AAGAB, IQCH, IQCH-AS1	rs72745470-G	0.374	1E-7		1.066098		NR [9372253] (imputed)	N
1101	chr15	67655972	67655973	rs12915659	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q23	NR	rs12915659-C	0.2366	5E-14		0.051	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1101	chr15	67661783	67661784	rs8043060	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q23	NA	rs8043060-A	0.2217	9E-17		0.0166	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1101	chr15	67661849	67661850	rs35819343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	NA	IQCH	rs35819343-A	NR	1E-8		0.017675	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1101	chr15	67661849	67661850	rs35819343	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	NA		rs35819343-A	0.480778	1E-20		0.0834825	[0.065-0.102] increase	Affymetrix [11014269] (imputed)	N
1101	chr15	67663099	67663100	rs41357746	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	15q23	NR	rs41357746-A	0.4895	5E-9	(European)	0.0366	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1101	chr15	67687967	67687968	rs4275804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs4275804-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1101	chr15	67697022	67697023	rs950784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q23		rs950784-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1101	chr15	67701494	67701495	rs2286664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	15q23		rs2286664-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1101	chr15	67702906	67702907	rs7359257	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	15q23	IQCH	rs7359257-A	0.45	2E-6		1.7	[0.92-2.48] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1101	chr15	67710010	67710011	rs28399271	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q23	NR	rs28399271-?	NR	7E-9	(male)	0.17056	[0.11-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
1101	chr15	67710010	67710011	rs28399271	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q23	NR	rs28399271-?	NR	3E-10		0.15059	[0.1-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
1101	chr15	67736022	67736023	rs2899723	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	15q23	IQCH	rs2899723-?		3E-6	(endpoint 3, additive)	2.04	[NR]	Illumina [> 750000]	N
1101	chr15	67762055	67762056	rs4776361	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q23	IQCH	rs4776361-A	0.261	2E-8		0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1102	chr15	67804681	67804682	rs11635495	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	15q23	IQCH/C15orf61	rs11635495-C	0.5147459999999999	7E-9		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1102	chr15	67804681	67804682	rs11635495	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	15q23	IQCH/C15orf61	rs11635495-C	0.5147459999999999	4E-6		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1102	chr15	67854240	67854241	rs16951001	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q23	MAP2K5	rs16951001-T	0.4181	3E-9		0.012067796	[0.0081-0.0161] unit increase	Affymetrix [11514654] (imputed)	N
1102	chr15	67855034	67855035	rs144705301	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	15q23	AAGAB, RPS24P16, MAP2K5, SKOR1	rs144705301-C	0.0263	2E-7		0.11	NR unit increase	NR [NR] (imputed)	N
1102	chr15	67890452	67890453	rs35733169	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q23	NR	rs35733169-C	0.511	1E-12		0.00767892	[0.0056-0.0098] unit increase	NR [9732723] (imputed)	N
1102	chr15	67892765	67892766	rs3865018	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q23	NA	rs3865018-T	0.2655	2E-29		0.0208	[0.017-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1103	chr15	67920678	67920679	rs140450540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q23	NR	rs140450540-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1103	chr15	67921173	67921174	rs8025889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs8025889-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1103	chr15	67937754	67937755	rs11637027	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q23	NR	rs11637027-G	NR	1E-17		0.024	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1103	chr15	67952921	67952922	rs938875	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	15q23	NR	rs938875-A	NR	4E-6	(random effect)	1.04	NR	NR [6904914] (imputed)	N
1103	chr15	67959463	67959464	rs8032675	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	15q23	MAP2K5	rs8032675-T	0.4	2E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1103	chr15	67965101	67965102	rs58648944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q23		rs58648944-G	NR	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1103	chr15	67988132	67988133	rs3784692	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q23	NR	rs3784692-C	0.3971	6E-22		0.024385395	[0.019-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1103	chr15	67991605	67991606	rs11637445	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	15q23	Intergenic	rs11637445-?	NR	6E-6		1.4859304	[NR]	Illumina [~ 5900000] (imputed)	N
1103	chr15	67994107	67994108	rs12905509	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q23	NR	rs12905509-G	0.504	4E-9		0.00861762	[0.0058-0.0115] unit decrease	NR [9732723] (imputed)	N
1103	chr15	68016342	68016343	rs997295	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	15q23	MAP2K5	rs997295-T	0.588	3E-9		0.033	[0.022-0.044] unit decrease	Illumina [7428049] (imputed)	N
1103	chr15	68017574	68017574	rs3837737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q23		rs3837737-CT	NR	4E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1103	chr15	68019957	68019958	rs12914773	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q23		rs12914773-G	0.402	3E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1104	chr15	68028821	68028822	rs117049462	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs117049462-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1104	chr15	68036851	68036852	rs12593813	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	15q23	MAP2K5, SKOR1	rs12593813-G	0.68	1E-22		1.41	[1.32-1.52]	Affymetrix [301406]	N
1104	chr15	68036851	68036852	rs12593813	17637780	Winkelmann J	2007-07-18	Nat Genet	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	15q23	MAP2K5, LBXCOR1	rs12593813-G	0.67	1E-15		1.5	[1.36-1.66]	Affymetrix [236758]	N
1104	chr15	68043056	68043057	rs8028313	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	15q23	MAP2K5	rs8028313-C	0.79	1E-11	(Overweight)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1104	chr15	68043056	68043057	rs8028313	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	15q23	MAP2K5	rs8028313-C	0.78	6E-13	(Obesity class I)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1104	chr15	68055012	68055013	rs868036	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	15q23	MAP2K5	rs868036-T	0.32	2E-74		0.81	[0.79-0.83]	Affymetrix, Illumina [15838848] (imputed)	N
1104	chr15	68055012	68055013	rs868036	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	15q23	SMAD3, MAP2K5, SKOR1, CLN6	rs868036-A	0.679999999999999	5E-69		1.1904762	[1.16-1.2]	Affymetrix, Illumina [6864281] (imputed)	N
1104	chr15	68060388	68060389	rs745213	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	15q23	SMAD3	rs745213-G	0.8102	3E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1104	chr15	68063738	68063739	rs28376010	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	15q23	MAP2K5	rs28376010-T	0.2142	3E-7		0.0429	[0.026-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1104	chr15	68072457	68072458	rs3784710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q23		rs3784710-C	NR	1E-27		0.0233	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1104	chr15	68072457	68072458	rs3784710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q23		rs3784710-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1104	chr15	68072457	68072458	rs3784710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q23		rs3784710-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	MAP2K5	rs8025790-G	0.7824	1E-10	(EA)	0.0324	[0.023-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	MAP2K5	rs8025790-G	0.781	2E-8	(EA,women)	0.036	[0.023-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	MAP2K5	rs8025790-G	0.7519	5E-10	(women)	0.0362	[0.025-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs8025790-?	NR	6E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs8025790-?	NR	2E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs8025790-G	0.7824	2E-9	(EA, women)	0.0348	[0.023-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs8025790-G	0.7608	7E-13		0.03	[0.022-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076398	68076399	rs8025790	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs8025790-G	0.7608	1E-10	(women)	0.0342	[0.024-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68076855	68076856	rs8030456	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q23	MAP2K5	rs8030456-C	0.773633	3E-37		0.0213135	[0.018-0.025] unit increase	Affymetrix [12370749]	N
1104	chr15	68077167	68077168	rs16951275	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	15q23	NR	rs16951275-?	NR	2E-7		0.03320327	[0.021-0.046] unit decrease	Illumina [32062178] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	9E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	4E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	1E-12		0.0301	[0.022-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	1E-10	(women)	0.0341	[0.024-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	5E-14		0.0281	[0.021-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q23	MAP2K5	rs16951275-T	0.7478	2E-11	(women)	0.0322	[0.023-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	15q23	MAP2K5	rs16951275-T	NR	6E-11	(additive model)	0.032	[0.022-0.042] unit increase	NR [9288881] (imputed)	N
1104	chr15	68077167	68077168	rs16951275	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q23	MAP2K5	rs16951275-T	0.786	9E-11	(EA, men)	0.032	[0.022-0.042] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1104	chr15	68077167	68077168	rs16951275	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q23	MAP2K5	rs16951275-T	0.784	2E-17	(EA)	0.031	[0.024-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1104	chr15	68077167	68077168	rs16951275	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q23	MAP2K5	rs16951275-T	0.783	3E-10	(EA, women)	0.03	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1104	chr15	68077167	68077168	rs16951275	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q23	MAP2K5	rs16951275-T	0.771	2E-18		0.03	[0.024-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1104	chr15	68077629	68077630	rs7175517	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	MAP2K5	rs7175517-A	0.7597	5E-12		0.0325	[0.023-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68077629	68077630	rs7175517	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs7175517-?	NR	6E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q23		rs4776970-T	NR	2E-21		0.0171	[0.014-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q23	NR	rs4776970-T	0.3618	6E-10		0.0294	[0.02-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q23	NR	rs4776970-T	0.4472	1E-12		0.0287	[0.021-0.037] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q23	MAP2K5	rs4776970-A	0.221	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q23	MAP2K5	rs4776970-A	0.6406	5E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q23	NR	rs4776970-A	NR	4E-24		0.026	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	15q23	IQCH	rs4776970-A		4E-6		0.0039	[0.0023-0.0055] unit increase	Illumina [at least 200000]	N
1104	chr15	68080885	68080886	rs4776970	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	15q23	MAP2K5	rs4776970-T	0.37	2E-19		0.023	[0.017-0.029] unit decrease	Illumina [6108953] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	15q23	MAP2K5	rs4776970-A	0.6333	4E-6		0.0325	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q23	MAP2K5	rs4776970-A	0.639	5E-9	(EA, men)	0.0283	[0.019-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q23	MAP2K5	rs4776970-A	0.639	2E-8	(EA)	0.0196	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	15q23	MAP2K5	rs4776970-A	0.22	3E-7		0.0317	[0.02-0.044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1104	chr15	68080885	68080886	rs4776970	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	15q23	MAP2K5	rs4776970-A	0.22	2E-9		2.55	[0.79-4.31] % increase	Affymetrix, Illumina [2474474] (imputed)	N
1104	chr15	68082815	68082816	rs2241420	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q23	MAP2K5	rs2241420-G	0.774304	2E-29		0.0184512	[0.015-0.022] unit increase	Affymetrix [12370749]	N
1104	chr15	68086837	68086838	rs2241423	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	15q23	NR	rs2241423-?	NR	1E-7		0.03411555	[0.021-0.047] unit decrease	Illumina [32062178] (imputed)	N
1104	chr15	68086837	68086838	rs2241423	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs2241423-?	NR	2E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68086837	68086838	rs2241423	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	MAP2K5	rs2241423-G	0.7809	8E-13	(EA)	0.0332	[0.024-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1104	chr15	68086837	68086838	rs2241423	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	15q23	NR	rs2241423-A	0.215263645020958	5E-23		0.03273353	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1104	chr15	68086837	68086838	rs2241423	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	15q23	MAP2K5, LBXCOR1	rs2241423-G	0.78	1E-18		0.13	[0.09-0.17] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1104	chr15	68090823	68090824	rs2127162	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	15q23	MAP2K5	rs2127162-A	NR	5E-11		0.023	[0.015-0.031] unit decrease	Illumina [2013566] (imputed)	N
1104	chr15	68113770	68113771	rs7171219	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	15q23		rs7171219-C	0.1476	8E-6	(East Asian)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1104	chr15	68123020	68123021	rs4776985	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q23		rs4776985-T	0.78	1E-16				NR [NR] (imputed)	N
1104	chr15	68123020	68123021	rs4776985	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q23		rs4776985-T	0.78	9E-31		0.02	% increase	NR [NR] (imputed)	N
1104	chr15	68126674	68126675	rs3803522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs3803522-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1104	chr15	68150922	68150923	rs4776997	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	15q23	LBXCOR1, MAP2K5	rs4776997-G	0.84	1E-6	(VPWL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
1105	chr15	68173920	68173921	rs338364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs338364-?	NR	3E-23				Affymetrix [~ 8270000] (imputed)	N
1105	chr15	68177161	68177162	rs10152518	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q23	NR	rs10152518-G	0.19	3E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
1105	chr15	68181533	68181534	rs1996120	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q23	NA	rs1996120-A	0.4228	4E-24		0.0167	[0.014-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1105	chr15	68181533	68181534	rs1996120	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	15q23	NA	rs1996120-A	0.4228	4E-24		0.0167	[0.014-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1105	chr15	68182253	68182254	rs28445794	33269293	Kannambath S	2020-10-16	Open Forum Infect Dis	Genome-Wide Association Study Identifies Novel Colony Stimulating Factor 1 Locus Conferring Susceptibility to Cryptococcosis in Human Immunodeficiency Virus-Infected South Africans.	Cryptococcosis in HIV infection	319 South African ancestry cases, 399 South African ancestry controls	NA	15q23	RNU6-1	rs28445794-?	NR	4E-6		0.9292	[NR]	Illumina [2686126] (imputed)	N
1105	chr15	68198910	68198911	rs448720	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	15q23	RNU6-2, RNU6-1	rs448720-?	NR	5E-6	(TrailsB)			Illumina [up to 563855]	N
1105	chr15	68221929	68221930	rs11630193	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q23		rs11630193-G	0.47	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
1105	chr15	68232673	68232674	rs421114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs421114-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1105	chr15	68249134	68249135	rs428022	30760885	Mbarek H	2019-02-13	Eur J Hum Genet	Biological insights into multiple birth: genetic findings from UK Biobank.	Number of twin births	8,962 European ancestry cases, 409,591 European ancestry controls	NA	15q23	PIAS1, SKOR1	rs428022-A	0.34	3E-8		1.04	[1.03-1.06]	Affymetrix [8532721] (imputed)	N
1105	chr15	68249134	68249135	rs428022	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q23	PIAS1	rs428022-G	0.655750299636659	3E-7		0.0029139	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1105	chr15	68260007	68260008	rs338389	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	15q23	intergenic	rs338389-?		3E-6	(overall survival)	3.4	[2.04-5.67]	Illumina [729737]	N
1105	chr15	68260967	68260968	rs60146098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q23		rs60146098-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1105	chr15	68269443	68269444	rs80182532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q23	NR	rs80182532-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1105	chr15	68273645	68273646	rs80146165	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q23	PIAS1	rs80146165-T	0.0128677720493307	8E-6	(F_Sutterellaceae_HB)	1.43466	[0.8-2.06] unit decrease	Illumina [7711310] (imputed)	N
1105	chr15	68280702	68280703	rs8037902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q23	RP11-883G10.1	rs8037902-T	0.585728	7E-11		0.015019424	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1106	chr15	68329443	68329444	rs11071975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q23		rs11071975-T	NR	5E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1106	chr15	68329443	68329444	rs11071975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q23	NR	rs11071975-T	0.269789	7E-14		0.015748	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1106	chr15	68334413	68334414	rs34849029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs34849029-G	0.478452	6E-10				Affymetrix, Illumina [19872809] (imputed)	N
1106	chr15	68343091	68343092	rs34852333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q23		rs34852333-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1107	chr15	68429835	68429836	rs78049372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q23	NR	rs78049372-T	NR	1E-14		0.0434	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1107	chr15	68454522	68454523	rs62004794	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q23	PIAS1	rs62004794-A	0.4418	4E-10		0.0948	[0.065-0.124] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1107	chr15	68469401	68469402	rs12594232	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	15q23	PIAS1	rs12594232-?	0.44599999999999995	1E-9		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1107	chr15	68487271	68487271	rs35301423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q23		rs35301423-TA	NR	3E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1107	chr15	68487271	68487271	rs35301423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q23	RP11-315D16.2, CALML4	rs35301423-TA	0.45471	2E-14		0.01816365	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr15	68487271	68487271	rs35301423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q23	RP11-315D16.2, CALML4	rs35301423-TA	0.454726	1E-13		0.017601749	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1107	chr15	68504004	68504005	rs149692285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs149692285-A	0.01394	1E-9	(SULT1A1)	1.92	NR unit increase	Illumina [1671387] (imputed)	N
1108	chr15	68570157	68570158	rs116529867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs116529867-G	0.268288	9E-12				Affymetrix, Illumina [24653286] (imputed)	N
1108	chr15	68570157	68570158	rs116529867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs116529867-G	0.270381	1E-12				Affymetrix, Illumina [24558453] (imputed)	N
1108	chr15	68570157	68570158	rs116529867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q23	NR	rs116529867-G	0.337349	1E-14		0.015253	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1108	chr15	68570165	68570166	rs55941639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q23		rs55941639-A	NR	1E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1108	chr15	68581389	68581390	rs7174574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q23	FEM1B	rs7174574-C	0.337347	7E-10		0.01457579	[0.0099-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr15	68581389	68581390	rs7174574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q23	FEM1B	rs7174574-C	0.337368	2E-9		0.014123879	[0.0095-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr15	68597126	68597127	rs7174755	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	15q23	PIAS1, CALML4, CLN6, FEM1B, ITGA11	rs7174755-C	0.3690476	3E-7	(% improvement - SSRI treated - 2 weeks)	0.2048	[0.13-0.28] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
1108	chr15	68597126	68597127	rs7174755	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	15q23	ITGA11	rs7174755-T	0.63	9E-7	(% improvement - 2 weeks)	1.168	[1.11-1.23]	Affymetrix, Illumina [1200000] (imputed)	N
1108	chr15	68598005	68598006	rs11634026	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q23	Intergenic	rs11634026-?		1E-6		1.1235955	[1.06-1.16]	Illumina [7645193] (imputed)	N
1108	chr15	68598005	68598006	rs11634026	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q23	Intergenic	rs11634026-?		3E-6		1.4084507	[1.22-1.61]	Illumina [7645193] (imputed)	N
1108	chr15	68607423	68607424	rs7181198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q23	NR	rs7181198-T	NR	2E-11		0.0295	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1108	chr15	68608449	68608450	rs76305215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q23		rs76305215-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1108	chr15	68622346	68622347	rs7179228	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	15q23	ITGA11	rs7179228-?	NR	1E-7	(Male, Pre-puberty)	0.121	[0.077-0.166] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1108	chr15	68624395	68624396	rs7168069	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	15q23	NA	rs7168069-A	0.233	7E-6		0.1593	[0.06538-0.3883]	Illumina [243345]	N
1108	chr15	68625688	68625689	rs28672317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q23	ITGA11	rs28672317-G	NR	2E-9		0.0286442	[0.019-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1108	chr15	68625714	68625715	rs28522005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	15q23	ITGA11	rs28522005-G	NR	5E-9		0.0289708	[0.019-0.039] unit decrease	Affymetrix [323858] (imputed)	N
1108	chr15	68625714	68625715	rs28522005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q23		rs28522005-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q23		rs2306022-T	0.07	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q23		rs2306022-T	0.07	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	15q23		rs2306022-T	NR	4E-13		0.1104	[0.081-0.14] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	15q23		rs2306022-T	0.076961881	3E-8		0.14002717	[0.091-0.189] unit increase	Illumina [13401454] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q23	NR	rs2306022-T	0.0918	9E-10				NR [9056863] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 15)	4,680 European ancestry individuals	3,566 European ancestry individuals	15q23		rs2306022-T	0.076175214	6E-9				Illumina [7417619] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q23	NR	rs2306022-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1108	chr15	68628162	68628163	rs2306022	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	15q23	ITGA11	rs2306022-T	0.11	9E-11		1.275	[1.185-1.372]	Illumina [238825]	N
1108	chr15	68632600	68632601	rs6494735	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of fructose	1,757 European ancestry twins	NA	15q23	ITGA11	rs6494735-T	0.05	3E-6		0.37	[0.21-0.53] unit increase	Illumina [4381914] (imputed)	N
1108	chr15	68635774	68635775	rs1563894	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	15q23	ITGA11, FEM1B, CORO2B, CALML4	rs1563894-?	NR	3E-8	(Pre-puberty)	0.093	[0.06-0.126] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1109	chr15	68691171	68691171	rs199600197	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	15q23	NR	rs199600197-?	0.112632	1E-6		0.171	[0.1-0.24] unit decrease	NR [9260588] (imputed)	N
1109	chr15	68713616	68713617	rs12912332	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q23	NR	rs12912332-G	NR	9E-6		0.1609	[0.088-0.233] SD units increase	NR [10700000] (imputed)	N
1109	chr15	68715031	68715032	rs7164335	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q23	ITGA11	rs7164335-?	NR	1E-7				Affymetrix [504219]	N
1109	chr15	68717074	68717075	rs8038368	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	15q23		rs8038368-?	NR	4E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1109	chr15	68718986	68718987	rs16952065	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q23	NR	rs16952065-C	0.93746857524488	6E-6	(IGP15)	0.4117	[0.23-0.59] unit decrease	Illumina [~ 2500000] (imputed)	N
1109	chr15	68718986	68718987	rs16952065	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q23	NR	rs16952065-C	0.937426751336898	1E-6	(IGP28)	0.4401	[0.26-0.62] unit decrease	Illumina [~ 2500000] (imputed)	N
1109	chr15	68735585	68735586	rs1445021	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	15q23	intergenic	rs1445021-A	0.94	9E-6		0.1365	[0.076-0.197] unit increase	Affymetrix [~ 2740000] (imputed)	N
1109	chr15	68778977	68778978	rs113645235	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs113645235-T	0.01045	9E-9	(IGHG2)	1.438	NR unit increase	Illumina [1671387] (imputed)	N
1109	chr15	68778977	68778978	rs113645235	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs113645235-T	0.01045	3E-10	(IGKC)	2.648	NR unit increase	Illumina [1671387] (imputed)	N
1109	chr15	68778977	68778978	rs113645235	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs113645235-T	0.01045	1E-18	(IGHV3OR16-9)	0.1312	NR unit increase	Illumina [1671387] (imputed)	N
1110	chr15	68849818	68849819	rs78019668	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	15q23	Intergenic	rs78019668-G	0.953	5E-7		1.5	[0.91-2.09] unit decrease	Illumina [9520174] (imputed)	N
1110	chr15	68892988	68892989	rs11856323	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	15q23	CORO2B	rs11856323-?	0.07883	1E-7	(PAL8)			Illumina [475971]	N
1111	chr15	68959001	68959002	rs60280851	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	15q23		rs60280851-?	NR	1E-5				Illumina [3311160] (imputed)	N
1111	chr15	68959001	68959002	rs60280851	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	15q23		rs60280851-?	NR	2E-6				Affymetrix, Illumina [3311160] (imputed)	N
1111	chr15	69021265	69021266	rs11330601	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q23	CORO2B	rs11330601-I	0.55	1E-8		0.43	[0.27-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1111	chr15	69021265	69021266	rs11330601	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	15q23	CORO2B	rs11330601-I	0.5324	8E-9		0.4575	[0.3-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1111	chr15	69059083	69059084	rs8030672	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	15q23	ANP32A	rs8030672-A	0.03	1E-11		1.56	[1.37-1.78]	Affymetrix [666141]	N
1111	chr15	69059671	69059672	rs8034820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q23		rs8034820-C	NR	1E-9		0.0321	[0.022-0.042] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1112	chr15	69147145	69147146	rs28849216	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	15q23	intergenic	rs28849216-A	0.57	9E-6		13.44	NR mg increase	NR [NR] (imputed)	N
1113	chr15	69329389	69329390	rs148060387	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	15q23	NOX5	rs148060387-T	2.84518605932667E-4	4E-6		6.085614	[3.5-8.68] unit increase	Illumina [247039]	N
1114	chr15	69344398	69344399	rs4776428	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q23	NOX5	rs4776428-C	0.0986761579405266	3E-6	(G_Dialister_HB)	0.414143	[0.24-0.59] unit increase	Illumina [7711310] (imputed)	N
1114	chr15	69346945	69346946	rs311904	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q23	NOX5	rs311904-A	0.164	2E-6	(Leptin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1114	chr15	69346945	69346946	rs311904	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q23	NOX5	rs311904-A	0.164	2E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
1114	chr15	69398025	69398026	rs1392635	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	15q23	NOX5	rs1392635-A	0.26	2E-6	(percent change)	1.7	[0.92-2.48] percent increase	Illumina [796174]	N
1114	chr15	69399212	69399212	rs201219357	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	15q23	RP11-809H16.5	rs201219357-?	0.03957	7E-7	(females)	1.87	[1.13-2.61] unit decrease	Illumina [9955952] (imputed)	N
1114	chr15	69400808	69400809	rs148377198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q23		rs148377198-G	NR	2E-8		0.0528	[0.034-0.071] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1114	chr15	69400808	69400809	rs148377198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q23		rs148377198-G	0.016836	5E-9		0.051285673	[0.034-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1114	chr15	69400808	69400809	rs148377198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q23		rs148377198-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1114	chr15	69409993	69409994	rs8035692	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	15q23	RP11-809H16.5	rs8035692-?	NR	6E-6				Affymetrix, Illumina [1184972]	N
1114	chr15	69424142	69424143	rs4777120	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLCE	5,358 Icelandic ancestry individuals	NA	15q23		rs4777120-C	0.3137	7E-6		0.0905149	[0.051-0.13] unit decrease	Illumina [7506463] (imputed)	N
1115	chr15	69559339	69559340	rs11854180	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q23	GLCE	rs11854180-T	0.769	8E-245	(D-glucuronyl C5-epimerase, GLCE.7808.5.3)	0.83	[0.79-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1115	chr15	69561517	69561518	rs3865014	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q23	GLCE	rs3865014-A	0.760625	2E-229	(GLCE, 7808_5_3)	0.8545163	[0.81-0.9] unit increase	Illumina [> 1000000] (imputed)	N
1115	chr15	69570805	69570806	rs77704002	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	15q23		rs77704002-?	NR	9E-6		0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1115	chr15	69579576	69579577	rs12438356	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q23	NR	rs12438356-C	NR	4E-6		0.1548	[0.089-0.221] SD units decrease	NR [10700000] (imputed)	N
1115	chr15	69583433	69583434	rs149453951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q23		rs149453951-T	NR	2E-15		0.0608	[0.046-0.076] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1115	chr15	69583433	69583434	rs149453951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q23		rs149453951-T	NR	2E-19		0.0701	[0.055-0.085] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1115	chr15	69583433	69583434	rs149453951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q23		rs149453951-T	NR	6E-19		0.0716	[0.056-0.087] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1115	chr15	69583433	69583434	rs149453951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q23	RP11-352D13.5, RP11-352D13.6	rs149453951-T	0.023855	1E-10		0.04867941	[0.034-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1115	chr15	69583433	69583434	rs149453951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q23		rs149453951-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1115	chr15	69597931	69597932	rs72756346	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q23	PAQR5	rs72756346-T	0.2739	5E-8		0.2047	[0.13-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
1116	chr15	69599495	69599496	rs2415038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q23		rs2415038-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1116	chr15	69609455	69609456	rs2047824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q23		rs2047824-C	NR	5E-29		0.0254	[0.021-0.03] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1116	chr15	69611166	69611167	rs7179475	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	15q23	PAQR5	rs7179475-?	NR	4E-9		0.0312	[0.021-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1116	chr15	69612052	69612053	rs34066945	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q23	NR	rs34066945-T	0.358	1E-19		0.002096	[0.0016-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
1116	chr15	69617236	69617237	rs139542826	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	15q23	NR	rs139542826-CT	NR	1E-6		0.00631005	[0.0038-0.0089] unit increase	Affymetrix [9740198] (imputed)	N
1116	chr15	69617236	69617237	rs139542826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q23	NR	rs139542826-D	0.638829	3E-10		0.014072	[0.0097-0.0185] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1116	chr15	69617237	69617238	rs11355683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q23	PAQR5	rs11355683-C	0.638481	1E-13		0.01738126	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1116	chr15	69617237	69617238	rs11355683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q23	PAQR5	rs11355683-C	0.638478	1E-12		0.016742842	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1116	chr15	69650052	69650053	rs11072089	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	15q23	NR	rs11072089-?	NR	3E-6		1.8896	[NR]	Affymetrix [722112]	N
1116	chr15	69675604	69675605	rs117638970	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q23	PAQR5	rs117638970-C		2E-8		0.484	unit increase	Affymetrix [at least 2696785] (imputed)	N
1116	chr15	69682915	69682916	rs117539635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q23		rs117539635-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1116	chr15	69682915	69682916	rs117539635	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q23	chr15mb69	rs117539635-G	0.025173323	2E-8		0.6472	[0.42-0.87] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1116	chr15	69729048	69729049	rs17310879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q23	KIF23	rs17310879-C	0.013837	2E-27		0.10828669	[0.089-0.128] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr15	69835910	69835911	rs78680540	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		DRAIC	rs78680540-?	NR	1E-8	(female)	0.39425	[NR] unit increase	Affymetrix [NR] (imputed)	N
1117	chr15	69852661	69852666	rs530075625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	15q23		rs530075625-A	0.267431	2E-8		0.0211641	[0.014-0.029] unit decrease	Illumina [13478928] (imputed)	N
1117	chr15	69854161	69854162	rs75458114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q23		rs75458114-T	NR	7E-10		0.0213	[0.015-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1118	chr15	69922758	69922759	rs55642284	34512620	Matzaraki V	2021-08-26	Front Immunol	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Candida albicans stimulated CCL3 levels	378 European ancestry individuals	NA	15q23		rs55642284-?	NR	1E-8		5.74	z-score increase	Illumina [NR] (imputed)	N
1118	chr15	69934751	69934751	rs34221625	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	15q23		rs34221625-T	NR	5E-6		0.87	[0.82-0.92]	Illumina [7105229] (imputed)	N
1118	chr15	69941244	69941245	rs747289475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q23		rs747289475-A	NR	2E-8		1.1983	[0.78-1.62] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1118	chr15	69941369	69941370	rs62007773	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q23	NA	rs62007773-T		4E-9		0.0117307	[0.0078-0.0156] unit decrease	Illumina [13288253] (imputed)	N
1118	chr15	69941369	69941370	rs62007773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q23	Intergenic	rs62007773-T	0.5631	2E-9	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1118	chr15	69972337	69972338	rs35122479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q23	NR	rs35122479-G	NR	2E-11		0.0267	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr15	69972337	69972338	rs35122479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q23	NR	rs35122479-G	NR	4E-21		0.0377	[0.03-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1118	chr15	69972337	69972338	rs35122479	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q23	RP11-279F6.3	rs35122479-G	0.10962	6E-12		0.024321228	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1118	chr15	69989504	69989505	rs2052702	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	15q23	PCAT29	rs2052702-A	0.386	4E-18		1.3157895	[1.23-1.41]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1118	chr15	69989666	69989666	rs759604347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q23	RP11-279F6.3	rs759604347-CAGAG	0.105198	6E-11		0.023697868	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	15q23	LOC145837	rs8026898-A	NR	2E-17		0.0647255	[-0.09051-0.21996] unit increase	Illumina [8380626] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	15q23	LOC145837	rs8026898-A	0.27	2E-17	(EA)	0.14416	[0.11-0.18] unit increase	Illumina [8380626] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	15q23	KIF23, TLE3	rs8026898-A	0.27	5E-14		1.15	[1.11-1.19]	Illumina [133816] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q23	LOC145837	rs8026898-A	0.27	6E-18	(EA)	1.15	[1.11-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	15q23	LOC145837	rs8026898-A	0.21	4E-19		1.15	[1.11-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	15q23	TLE3	rs8026898-A	0.29	7E-12		1.1662	(Immunochip only)	Illumina [129464] (imputed)	N
1118	chr15	69991416	69991417	rs8026898	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	15q23	TLE3	rs8026898-A	0.29	6E-11				Illumina [129464] (imputed)	N
1119	chr15	69995343	69995344	rs17374222	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	15q23	KIF3	rs17374222-A	0.49	2E-6		1.13	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1119	chr15	70003374	70003375	rs71404232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q23	RP11-279F6.3	rs71404232-G	NR	2E-10		0.0321487	[0.022-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1119	chr15	70006872	70006873	rs4776472	17903304	Larson MG	2007-09-19	BMC Med Genet	Framingham Heart Study 100K project: genome-wide associations for cardiovascular disease outcomes.	Atrial fibrillation	151 cases and 1,190 controls from 310 families	NA	15q23	intergenic	rs4776472-?	NR	8E-6				Affymetrix [70897]	N
1119	chr15	70010646	70010647	rs7170107	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	15q23		rs7170107-T	NR	6E-18		1.15	[1.11-1.18]	NR [13810676] (imputed)	N
1119	chr15	70018989	70018990	rs7176508	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	15q23		rs7176508-?	NR	2E-9		1.36338	[1.26-1.46]	NR [663083]	N
1119	chr15	70018989	70018990	rs7176508	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	15q23	RPLP1	rs7176508-A	0.38	8E-18		1.42	[NR]	Illumina [450000] (imputed)	N
1119	chr15	70018989	70018990	rs7176508	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	15q23	RPLP1	rs7176508-A	0.39	1E-17		1.32	[NR]	Illumina [549934]	N
1119	chr15	70018989	70018990	rs7176508	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	15q23	NR	rs7176508-A	0.37	3E-11		1.42	[1.28-1.58]	Affymetrix, Illumina [~ 1500000] (imputed)	N
1119	chr15	70018989	70018990	rs7176508	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	15q23	intergenic	rs7176508-A	0.37	5E-12		1.37	[1.26-1.50]	Illumina [345665]	N
1119	chr15	70019709	70019710	rs71393459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q23	NR	rs71393459-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1119	chr15	70020524	70020525	rs11637565	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	15q23	RPLP1	rs11637565-G	NR	2E-31		1.35	[1.28-1.42]	Affymetrix, Illumina [> 10000000] (imputed)	N
1119	chr15	70022163	70022164	rs7162669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q23	AC009677.1	rs7162669-C	NR	3E-8		0.0279576	[0.018-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1119	chr15	70024406	70024407	rs4776477	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	15q23		rs4776477-A	NR	4E-11		1.3801	NR	Affymetrix [7846216] (imputed)	N
1119	chr15	70024491	70024491	rs34214868	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q23	AC009677.1	rs34214868-A	0.9032	8E-9		0.0629	[0.042-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1119	chr15	70027550	70027551	rs76977261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q23		rs76977261-?	NR	9E-40				NR [~ 8900000] (imputed)	N
1119	chr15	70033577	70033578	rs34025077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q23		rs34025077-G	NR	5E-43		0.0343	[0.029-0.039] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1119	chr15	70033577	70033578	rs34025077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q23		rs34025077-G	0.102967	4E-19		0.03259602	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1119	chr15	70033577	70033578	rs34025077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs34025077-G	0.088867	1E-24				Affymetrix, Illumina [23472807] (imputed)	N
1119	chr15	70033577	70033578	rs34025077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q23	NR	rs34025077-G	0.101398	1E-25		0.032806	[0.027-0.039] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1119	chr15	70033908	70033909	rs71393465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q23		rs71393465-G	NR	2E-13		0.0275	[0.02-0.035] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1119	chr15	70034087	70034088	rs16953685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs16953685-?	NR	2E-67				NR [~ 8900000] (imputed)	N
1119	chr15	70039199	70039200	rs2117234	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q23	NR	rs2117234-T	NR	7E-15		0.0479261	NR unit decrease	NR [NR] (imputed)	N
1119	chr15	70040253	70040254	rs12902958	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q23	NR	rs12902958-A	0.103044	5E-90		0.107185	[0.097-0.118] unit increase	NR [19129689] (imputed)	N
1119	chr15	70040253	70040254	rs12902958	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	15q23	intergenic	rs12902958-G	NR	4E-15		0.1817	[0.14-0.23] unit increase	Affymetrix [27512692] (imputed)	N
1119	chr15	70040253	70040254	rs12902958	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q23	NR	rs12902958-A	NR	3E-15		0.0805314	NR unit increase	NR [NR] (imputed)	N
1119	chr15	70041692	70041693	rs7177657	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q23	NR	rs7177657-C	NR	7E-15		0.08	NR unit increase	NR [NR] (imputed)	N
1119	chr15	70041692	70041693	rs7177657	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	15q23	RPLP1, TLE3	rs7177657-?	NR	1E-9		1.2610341	[1.17-1.36]	Illumina [13436641] (imputed)	N
1119	chr15	70042887	70042888	rs7182742	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	15q23		rs7182742-T	0.47	3E-10		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1119	chr15	70046035	70046036	rs7180247	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q23	NR	rs7180247-G	0.425755	7E-30		0.0370908	[0.031-0.043] unit increase	NR [19129689] (imputed)	N
1119	chr15	70048115	70048116	rs10152590	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	15q23		rs10152590-A	NR	4E-9	(conditional on rs7170107)	0.139	[0.092-0.186] unit increase	NR [13810676] (imputed)	N
1119	chr15	70048156	70048157	rs10152591	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q23	TLE3	rs10152591-A	0.91	3E-10		0.041	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1119	chr15	70050126	70050127	rs10152712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q23	NR	rs10152712-C	NR	7E-10		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1119	chr15	70109186	70109187	rs79112113	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	15q23	NR	rs79112113-?	NR	3E-6		4826.35	NR unit decrease	Illumina [2379855]	N
1120	chr15	70149557	70149558	rs73439730	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	15q23	LINC00593, TLE3, MIR629	rs73439730-?		8E-6		1.568135	[1.30-1.90]	Illumina [9389922] (imputed)	N
1120	chr15	70155246	70155247	rs58999906	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	15q23	intergenic	rs58999906-?	NR	1E-6				Affymetrix, Illumina [4802696] (imputed)	N
1120	chr15	70155792	70155793	rs10518844	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	15q23	NR	rs10518844-T	NR	9E-6	(male)	0.1361	[0.076-0.196] unit increase	Illumina [11133794] (imputed)	N
1120	chr15	70194152	70194153	rs80039904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q23		rs80039904-T	NR	4E-8		0.0234	[0.015-0.032] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1120	chr15	70194152	70194153	rs80039904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	15q23		rs80039904-T	0.167748	4E-8		0.0234189	[0.015-0.032] unit increase	Illumina [13479178] (imputed)	N
1120	chr15	70205972	70205973	rs8038587	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q23	LINC00593, TLE3	rs8038587-?		4E-8		0.0292	[0.019-0.04] unit decrease	Illumina [31500000] (imputed)	N
1120	chr15	70207076	70207077	rs2679617	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	15q23	LINC00593, TLE3	rs2679617-?	NR	2E-8		0.02709	[0.018-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1120	chr15	70207606	70207607	rs36040403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	15q23		rs36040403-C	0.184177	1E-10		0.0313056	[0.022-0.041] unit decrease	Illumina [13477433] (imputed)	N
1120	chr15	70207606	70207607	rs36040403	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	15q23	LINC00593, TLE3	rs36040403-?	NR	2E-8		0.03072	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1120	chr15	70207606	70207607	rs36040403	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	15q23	LINC00593, TLE3	rs36040403-?	NR	1E-8		0.03344	[0.022-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1120	chr15	70226622	70226623	rs1548076	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to citalopram or escitalopram and depression	2,005 European ancestry non-responder cases, 192,083 European ancestry healthy controls	NA	15q23	RPLP1, TLE3	rs1548076-?		1E-6		2.4937656	[1.63-3.82]	Illumina [~ 12000000] (imputed)	N
1121	chr15	70286916	70286917	rs11635749	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	15q23	TLE3	rs11635749-A	0.78	1E-6		0.076	[0.045-0.107] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
1121	chr15	70293070	70293071	rs16954038	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs16954038-G	0.0371	3E-6		4.64	z score increase	Illumina [7275796] (imputed)	N
1121	chr15	70349577	70349578	rs8030938	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q23	TLE3	rs8030938-A	0.5379	4E-6		0.0296	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1121	chr15	70356149	70356150	rs8039718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q23	TLE3	rs8039718-T	NR	3E-8		0.0203431	[0.013-0.028] unit increase	Affymetrix [321016] (imputed)	N
1121	chr15	70356149	70356150	rs8039718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs8039718-?	NR	2E-46				NR [~ 8900000] (imputed)	N
1121	chr15	70357917	70357918	rs16954106	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q23	TLE3	rs16954106-?	NR	2E-15		0.030593412	[0.023-0.038] unit increase	Illumina [27896057] (imputed)	N
1121	chr15	70364351	70364352	rs975210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q23	TLE3	rs975210-A	NR	2E-8		0.0223362	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1121	chr15	70364351	70364352	rs975210	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q23	NR	rs975210-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-A	0.1811	4E-7	(women)	0.0352	[0.022-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-A	0.1811	3E-8		0.0265	[0.017-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-A	0.1811	2E-6	(men)	0.0338	[0.02-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	TLE3	rs975210-A	0.1816	4E-6	(men)	0.0375	[0.022-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	TLE3	rs975210-A	0.1811	6E-7		0.0275	[0.017-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q23	TLE3	rs975210-A	0.1799	2E-6	(women)	0.0379	[0.022-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-?	0.1811	6E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-?	0.1811	4E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q23	TLE3	rs975210-?	0.1811	2E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1121	chr15	70364351	70364352	rs975210	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q23	TLE3	rs975210-A	0.184	1E-17		0.035	[0.027-0.043] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1121	chr15	70365761	70365762	rs4777230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q23		rs4777230-C	0.166702	7E-13		0.0193404	[0.014-0.025] unit increase	Illumina [13479295] (imputed)	N
1121	chr15	70365761	70365762	rs4777230	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q23	TLE3	rs4777230-T	0.8568	8E-12		0.0634	[0.045-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1121	chr15	70369377	70369378	rs11630316	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	15q23	TLE3	rs11630316-C	0.324	9E-6	(RAVLT)	2.2705	[1.28-3.26] unit increase	Affymetrix [> 371951] (imputed)	N
1121	chr15	70376114	70376115	rs75404152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q23	NR	rs75404152-C	0.101631	2E-12		0.022541	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1121	chr15	70376440	70376441	rs631864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q23		rs631864-C	NR	2E-27		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1121	chr15	70376440	70376441	rs631864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q23	TLE3	rs631864-C	0.471848	5E-9		0.013100364	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr15	70376440	70376441	rs631864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q23	NR	rs631864-C	0.472055	3E-11		0.012711	[0.009-0.0165] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1121	chr15	70376816	70376817	rs11858463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q23	TLE3	rs11858463-T	0.724768	4E-10		0.01567084	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q23		rs36085856-C	NR	5E-14		0.0239	[0.018-0.03] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q23	TLE3	rs36085856-C	0.068778	3E-16		0.035918266	[0.027-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q23	TLE3	rs36085856-C	0.06879	3E-18		0.03814532	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs36085856-C	0.0744832	2E-21				Affymetrix, Illumina [19872809] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q23	NR	rs36085856-C	0.06975	2E-20		0.036734	[0.029-0.044] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q23		rs36085856-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q23		rs36085856-C	0.0734	2E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1121	chr15	70379235	70379236	rs36085856	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q23	NR	rs36085856-?	NR	4E-6		4.611	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1121	chr15	70379532	70379533	rs35485240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q23	NR	rs35485240-C	NR	1E-18		0.0258	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1121	chr15	70379532	70379533	rs35485240	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q23	NR	rs35485240-C	NR	6E-30		0.0333	[0.028-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1121	chr15	70384877	70384878	rs66844142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q23		rs66844142-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1121	chr15	70385417	70385418	rs72749676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q23		rs72749676-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1122	chr15	70387559	70387560	rs12441129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q23	TLE3	rs12441129-C	0.14838	1E-10		0.019971315	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1122	chr15	70402094	70402095	rs868127	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q23	TLE3	rs868127-C	0.718266	2E-15		0.016512	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
1122	chr15	70403465	70403465	rs538356182	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs538356182-?	NR	2E-14		0.0183533	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1122	chr15	70417541	70417542	rs75041828	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs75041828-G	0.01568	4E-9	(DPP7)	0.1418	NR unit increase	Illumina [1671387] (imputed)	N
1122	chr15	70431772	70431773	rs11855650	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q23	TLE3, SALRNA3	rs11855650-T	0.382512812	6E-7		1.0864811	[1.051754047-1.122354662]	Illumina [10439017] (imputed)	N
1122	chr15	70439785	70439786	rs751156121	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Waist-to-hip ratio adjusted for body mass index	19,695 British ancestry individuals from 6863 families.	NA	15q23	intergenic	rs751156121-G	6.0E-4	1E-8		1.4202151	[0.93-1.91] unit increase	Illumina [24111857] (imputed)	N
1122	chr15	70446997	70446998	rs2004851	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q23	TLE3	rs2004851-A	0.3253	2E-19		0.6339	[0.5-0.77] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1122	chr15	70447581	70447582	rs904974	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	15q23	TLE3	rs904974-T	0.16	5E-8		1.1	[0.73-1.47] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1122	chr15	70454138	70454139	rs12591736	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q23	TLE3, UACA	rs12591736-G	0.82	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1122	chr15	70458575	70458576	rs4777245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q23	TLE3	rs4777245-T	0.772902	9E-9	(16 ms)	0.0374925	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1122	chr15	70458575	70458576	rs4777245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q23	TLE3	rs4777245-T	0.772902	8E-10	(10 ms)	0.0394217	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1122	chr15	70458575	70458576	rs4777245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q23	TLE3	rs4777245-T	0.772902	7E-10	(12 ms)	0.0394118	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1122	chr15	70458575	70458576	rs4777245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q23	TLE3	rs4777245-T	0.772902	6E-9	(8 ms)	0.037114	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1122	chr15	70458575	70458576	rs4777245	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q23	TLE3	rs4777245-T	0.772902	2E-9	(14 ms)	0.0388689	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1122	chr15	70480613	70480614	rs6494849	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	15q23	NR	rs6494849-A	0.12	7E-6		1.23	[1.13-1.35]	Affymetrix, Illumina [2366197] (imputed)	N
1123	chr15	70546410	70546411	rs12592259	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs12592259-?	NR	7E-15		0.0259961	[0.019-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1123	chr15	70552312	70552313	rs1706708	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q23	TLE3	rs1706708-G	0.672202	1E-40		0.0266555	[0.023-0.031] unit increase	NR [13737936] (imputed)	N
1123	chr15	70552312	70552313	rs1706708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q23		rs1706708-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1123	chr15	70552312	70552313	rs1706708	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs1706708-?	NR	3E-49		0.0307679	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1123	chr15	70566288	70566289	rs2196072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q23	NR	rs2196072-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1123	chr15	70576137	70576138	rs1971791	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	15q23	intergenic	rs1971791-G	0.47	1E-6	(Joint)	1.26	[1.14-1.4]	Illumina [254145]	N
1123	chr15	70585931	70585932	rs12912024	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	15q23	LOC105370878	rs12912024-?	NR	4E-6				Illumina [7401356] (imputed)	N
1123	chr15	70585931	70585932	rs12912024	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	15q23	LOC105370878	rs12912024-?	NR	8E-6				Illumina [7401356] (imputed)	N
1123	chr15	70586616	70586617	rs1355585	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q23	NR	rs1355585-?	NR	7E-8				Illumina [up to 5582932] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q23	TLE3	rs12148337-T	NR	6E-10		1.059	[1.04-1.08]	Illumina [6627481] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q23	TLE3	rs12148337-T	NR	2E-7	(EA)	1.0586	[1.04-1.08]	Illumina [6627481] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q23	TLE3	rs12148337-?	NR	1E-8		1.0857763	[1.06-1.11]	Illumina [8000000] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q23	intergenic	rs12148337-T	NR	6E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q23	NR	rs12148337-T	NR	3E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1123	chr15	70589271	70589272	rs12148337	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q23	TLE3	rs12148337-T	0.465	2E-8		1.06	[1.038-1.081]	Affymetrix, Illumina [9005918] (imputed)	N
1123	chr15	70590000	70590001	rs2668602	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs2668602-?	NR	8E-31		0.0246528	[0.02-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1123	chr15	70590000	70590001	rs2668602	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q23	TLE3	rs2668602-G	0.382525	6E-11	(women)	0.03111	[0.022-0.04] unit decrease	NR [17166351] (imputed)	N
1123	chr15	70590000	70590001	rs2668602	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q23	TLE3	rs2668602-G	0.38221	1E-16		0.0276644	[0.021-0.034] unit decrease	NR [17166351] (imputed)	N
1123	chr15	70590000	70590001	rs2668602	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q23	TLE3	rs2668602-G	0.38185	2E-6	(men)	0.021665	[0.011-0.032] unit decrease	NR [17166351] (imputed)	N
1123	chr15	70615406	70615407	rs2060337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q23	Intergenic	rs2060337-T	0.4793	1E-9	(MTAG)	0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr15	70615406	70615407	rs2060337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q23	Intergenic	rs2060337-T	0.4793	2E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1123	chr15	70615406	70615407	rs2060337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q23	Intergenic	rs2060337-T	0.4789	4E-8	(MTAG)	0.0091	[0.0058-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr15	70620475	70620476	rs34003015	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs34003015-?	NR	5E-12		0.0371313	[0.026-0.048] unit increase	Affymetrix [20259828] (imputed)	N
1123	chr15	70631099	70631100	rs8025626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q23		rs8025626-A	0.39717	4E-9		0.013413941	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1123	chr15	70634708	70634709	rs11072158	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	15q23	intergenic	rs11072158-?	0.85	3E-6		1.18	[1.1-1.27]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1123	chr15	70644280	70644280	rs34149821	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q23		rs34149821-?	NR	6E-17		0.0178322	[0.014-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1124	chr15	70667701	70667702	rs4238428	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q23	LOC101929151	rs4238428-C	0.472579	2E-12		0.0132877	[0.0096-0.017] unit increase	NR [13737936] (imputed)	N
1124	chr15	70668823	70668824	rs12913603	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	15q23	NR	rs12913603-A	NR	1E-8		1.039	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1124	chr15	70668823	70668824	rs12913603	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q23	NR	rs12913603-A	NR	7E-6	(LME model)	0.4172	[0.24-0.6] unit decrease	NR [NR] (imputed)	N
1124	chr15	70669904	70669905	rs117015940	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	15q23		rs117015940-?	NR	8E-6		1.1353476	[1.07381877994527-1.20040209656213]	Illumina [up to 7827597] (imputed)	N
1124	chr15	70680484	70680485	rs7173557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q23		rs7173557-G	0.18	4E-28		11.01	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr15	70688006	70688007	rs8029315	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q23	NR	rs8029315-?		1E-8				NR [7428630] (imputed)	N
1124	chr15	70700755	70700756	rs59208555	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q23	NR	rs59208555-G	NR	8E-6		1.534	[1.27-1.85]	Illumina [13976150] (imputed)	N
1124	chr15	70703231	70703232	rs8024453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q23		rs8024453-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1124	chr15	70716909	70716910	rs8035587	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q23		rs8035587-T	0.18	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr15	70716909	70716910	rs8035587	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q23		rs8035587-T	0.18	1E-16		8.29	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr15	70716909	70716910	rs8035587	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q23	NR	rs8035587-T	0.1881	2E-9				NR [9056863] (imputed)	N
1124	chr15	70716909	70716910	rs8035587	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q23	NR	rs8035587-T	0.1881	2E-15				NR [9056863] (imputed)	N
1124	chr15	70740272	70740273	rs117404272	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	15q23	NR	rs117404272-A	0.0431	5E-6		0.4192	[0.24-0.6] unit increase	Illumina [NR] (imputed)	N
1124	chr15	70745889	70745890	rs4408495	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q23	TLE3, LINC02205	rs4408495-?	NR	3E-8		0.663	[0.43-0.9] unit decrease	Affymetrix [11100000] (imputed)	N
1124	chr15	70756624	70756625	rs4624119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q23		rs4624119-G	0.381742	3E-12		0.015908273	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1124	chr15	70756624	70756625	rs4624119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q23		rs4624119-G	0.381762	7E-12		0.015613281	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1124	chr15	70764053	70764054	rs8030559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q23		rs8030559-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1125	chr15	70785632	70785633	rs12903859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs12903859-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1125	chr15	70798558	70798559	rs8034004	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	15q23	intergenic	rs8034004-C	0.4435	6E-6		0.0611	[0.035-0.088] unit increase	Illumina [2400000] (imputed)	N
1125	chr15	70810983	70810984	rs36116683	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	15q23	NR	rs36116683-G	0.2011	1E-6		0.1746	[0.11-0.24] unit increase	Illumina [7305641] (imputed)	N
1125	chr15	70816641	70816642	rs4777294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q23		rs4777294-T	0.130753	4E-9		0.01949339	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1125	chr15	70816641	70816642	rs4777294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q23		rs4777294-T	0.130757	1E-9		0.020170873	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1125	chr15	70855716	70855717	rs148702521	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs148702521-C	0.01742	1E-8	(AKR1C2)	0.8469	NR unit increase	Illumina [1671387] (imputed)	N
1126	chr15	70933289	70933290	rs2114718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q23		rs2114718-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1127	chr15	71088276	71088277	rs150840489	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	15q23		rs150840489-G	0.975139	4E-7		0.0510393	[0.034-0.068] unit decrease	Illumina [7666802] (imputed)	N
1127	chr15	71088276	71088277	rs150840489	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	15q23		rs150840489-G	0.975139	2E-9		0.0510393	[0.034-0.068] unit decrease	Illumina [13900000] (imputed)	N
1127	chr15	71109146	71109147	rs1549318	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	15q23	LARP6	rs1549318-T	0.61	2E-10				Affymetrix, Illumina [~ 2500000] (imputed)	N
1127	chr15	71126592	71126593	rs12438204	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	15q23	LARP6	rs12438204-?	NR	3E-7				NR [3144808] (imputed)	N
1127	chr15	71159398	71159399	rs11072230	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q23	NR	rs11072230-?	NR	2E-8	(white matter)			NR [9227495] (imputed)	N
1127	chr15	71167121	71167122	rs116915077	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q23	THAP10	rs116915077-G	0.0160690224779471	4E-7	(G_unclassified_P_Firmicutes_HB)	1.43872	[0.88-2] unit decrease	Illumina [7711310] (imputed)	N
1128	chr15	71191608	71191609	rs7181412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs7181412-G	0.04878	8E-10	(TAGLN2)	0.2096	NR unit increase	Illumina [1671387] (imputed)	N
1128	chr15	71191608	71191609	rs7181412	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs7181412-G	0.04878	1E-8	(MTPN)	0.01694	NR unit increase	Illumina [1671387] (imputed)	N
1128	chr15	71215377	71215378	rs1441252	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q23		rs1441252-A	0.4	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
1129	chr15	71325284	71325285	rs28814649	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	15q23	LRRC49	rs28814649-T	NR	4E-7		0.119046	[0.073-0.165] unit decrease	Illumina [7433384] (imputed)	N
1129	chr15	71363703	71363704	rs1614625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs1614625-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1129	chr15	71394208	71394209	rs62019145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q23		rs62019145-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1129	chr15	71399993	71399994	rs114639857	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	15q23		rs114639857-C	0.973303	4E-6		0.0363608	[0.021-0.052] unit decrease	Illumina [13900000] (imputed)	N
1129	chr15	71424008	71424009	rs12904863	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	15q23	CT62	rs12904863-C	0.08	6E-6	(AA-triglyceride response)	30.31	[17.22-43.4] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1130	chr15	71507763	71507764	rs12324441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q23		rs12324441-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1131	chr15	71572953	71572954	rs76917273	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	15q23	NR	rs76917273-C	0.007	5E-6		0.587	[0.34-0.84] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1131	chr15	71574798	71574799	rs9806183	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	15q23	THSD4	rs9806183-C	0.66	2E-6	(Age 20-60 years)	1.37	[1.20-1.57]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1131	chr15	71576754	71576755	rs1442779	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	15q23	THSD4	rs1442779-?	0.72	7E-6	(Age 20-81 years)	1.33	[1.18-1.52]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1131	chr15	71576754	71576755	rs1442779	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q23	THSD4	rs1442779-A	0.28	7E-6	(Age 20-60 years)	0.0543	[0.031-0.078] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1131	chr15	71587372	71587373	rs3743111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q23		rs3743111-A	NR	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1131	chr15	71605452	71605453	rs1606888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	15q23		rs1606888-G	NR	2E-8		0.0861	[0.056-0.116] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
1131	chr15	71606379	71606380	rs11631778	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q23	THSD4	rs11631778-G		1E-8		0.141	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1131	chr15	71606665	71606666	rs28529655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q23		rs28529655-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1131	chr15	71606665	71606666	rs28529655	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q23	THSD4	rs28529655-C	0.5618	1E-13		0.1868	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1131	chr15	71608618	71608619	rs17786786	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q23	NR	rs17786786-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1131	chr15	71609305	71609306	rs4337253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q23		rs4337253-C	NR	1E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1131	chr15	71609521	71609522	rs6494904	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	15q23		rs6494904-G	0.2749	1E-14		0.063351	[0.047-0.08] decrease	Affymetrix [NR]	N
1131	chr15	71610834	71610835	rs11855326	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	15q23		rs11855326-G	0.729899	1E-15		0.0642276	[0.049-0.08] increase	Affymetrix [NR]	N
1131	chr15	71612396	71612397	rs1441357	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q23	NR	rs1441357-?	NR	8E-11				Affymetrix [NR]	N
1131	chr15	71612513	71612514	rs1441358	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q23	THSD4	rs1441358-G	0.34	7E-33		1.13	[1.11-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
1131	chr15	71612513	71612514	rs1441358	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	15q23	THSD4	rs1441358-T	0.6642	3E-55		0.0417	[0.036-0.047] unit increase	Affymetrix [19819130] (imputed)	N
1131	chr15	71612513	71612514	rs1441358	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q23	THSD4	rs1441358-T	0.6642	4E-145		0.0642	[0.059-0.069] unit increase	Affymetrix [19819130] (imputed)	N
1131	chr15	71612513	71612514	rs1441358	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q23	THSD4	rs1441358-T	0.6642	4E-21		0.0232	[0.018-0.028] unit increase	Affymetrix [19819130] (imputed)	N
1131	chr15	71612513	71612514	rs1441358	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	15q23	THSD4	rs1441358-G	0.33	8E-16		1.13	[1.10,1.16]	Affymetrix, Illumina [NR] (imputed)	N
1131	chr15	71613246	71613247	rs190321105	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q23	NR	rs190321105-T	0.01	1E-6		1.77	[1.53-2.01]	Illumina [8468885] (imputed)	N
1131	chr15	71621523	71621524	rs11853359	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q23		rs11853359-?	NR	5E-197				NR [~ 8900000] (imputed)	N
1131	chr15	71621523	71621524	rs11853359	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q23	THSD4	rs11853359-A	0.3548	3E-12		0.1798	[0.13-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1131	chr15	71621561	71621562	rs11856837	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q23		rs11856837-C	0.2	2E-21		9.48	z score increase	Affymetrix [9061022] (imputed)	N
1131	chr15	71621561	71621562	rs11856837	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q23		rs11856837-C	0.2	5E-12		6.9	z score increase	Affymetrix [9061022] (imputed)	N
1131	chr15	71621561	71621562	rs11856837	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q23	NR	rs11856837-C	0.1745	7E-12				NR [9056863] (imputed)	N
1131	chr15	71621561	71621562	rs11856837	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	15q23	NR	rs11856837-?		2E-8				NR [7428630] (imputed)	N
1131	chr15	71621561	71621562	rs11856837	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q23	THSD4	rs11856837-?		3E-8				NR [7428630] (imputed)	N
1131	chr15	71628346	71628347	rs1473607	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q23		rs1473607-A	0.2	1E-14		7.73	z score increase	Affymetrix [9061022] (imputed)	N
1131	chr15	71628346	71628347	rs1473607	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q23	NR	rs1473607-A	0.1723	1E-17				NR [9056863] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	3E-14		1.14	[1.1-1.18]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	1E-23			[NR]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	3E-20		1.12	[1.1-1.15]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	6E-23			[NR]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	3E-20		1.12	[1.1-1.15]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	4E-14		1.14	[1.1-1.18]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	15q23	NR	rs10851839-T	0.34	4E-12		1.11	[1.08-1.15]	Affymetrix [9886854] (imputed)	N
1131	chr15	71628369	71628370	rs10851839	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q23	THSD4	rs10851839-A	0.6687	1E-24		0.072	[0.058-0.086] unit increase	Affymetrix [27624732] (imputed)	N
1131	chr15	71637240	71637241	rs8030394	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (ER positive, PR positive, and HER2 negative)	35,550 European ancestry individuals	NA	15q23		rs8030394-?	NR	1E-8		2.47	[1.81-3.37]	NR [10000000] (imputed)	N
1131	chr15	71643786	71643787	rs4777372	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	15q23		rs4777372-C	0.2302	2E-6	(East Asian)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1131	chr15	71645119	71645120	rs12899618	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	15q23	THSD4	rs12899618-?	NR	4E-21	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1131	chr15	71645119	71645120	rs12899618	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	15q23	THSD4	rs12899618-G	0.85	7E-15	(FEV1/FVC)	0.06	[0.044-0.076] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1131	chr15	71655734	71655735	rs12102112	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q23	THSD4	rs12102112-T	0.15	2E-17	(conditional on rs1441358)	1.12	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1131	chr15	71665823	71665824	rs2119568	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q23	THSD4	rs2119568-C	0.18	1E-24	(conditional on rs1441358)	1.14	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1131	chr15	71671417	71671418	rs62015549	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	15q23	THSD4	rs62015549-T	0.01	2E-6		2.44	[1.48-3.4] unit decrease	Illumina [~ 31000000] (imputed)	N
1131	chr15	71679958	71679959	rs2044029	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q23	THSD4	rs2044029-A	.4	1E-7	(All)	1.17	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1132	chr15	71696885	71696886	rs12441227	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	15q23	THSD4, TLE3, UACA	rs12441227-?	NR	3E-9	(FEV1/FVC)			Affymetrix [246010]	N
1132	chr15	71709069	71709070	rs10083577	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q23	NR	rs10083577-A	0.09	3E-7		0.059	[0.035-0.083] unit increase	Affymetrix [27624732] (imputed)	N
1132	chr15	71742093	71742094	rs142200609	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	15q23	Intergenic	rs142200609-T	NR	3E-7	(within families)	5.118	unit increase	Affymetrix [up to 15107142] (imputed)	N
1132	chr15	71755644	71755645	rs34430707	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	15q23		rs34430707-G	0.194195942	7E-12				Illumina [7417619] (imputed)	N
1132	chr15	71788386	71788387	rs12591467	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q23	THSD4	rs12591467-T	0.68	6E-10	(conditioned on rs10851839)	0.026	[0.018-0.034] unit increase	Affymetrix [27624732] (imputed)	N
1132	chr15	71803449	71803450	rs62015883	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q23	THSD4	rs62015883-T	0.1784	1E-23		0.031	[0.025-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
1132	chr15	71803449	71803450	rs62015883	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q23	THSD4	rs62015883-T	0.1784	1E-11		0.0206	[0.015-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1132	chr15	71804586	71804587	rs62015884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q23		rs62015884-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1132	chr15	71812957	71812958	rs4128840	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	15q23	THSD4	rs4128840-A	0.41	8E-6		0.17	[0.092-0.248] unit decrease	Illumina [5918868] (imputed)	N
1133	chr15	71833068	71833070	rs34631960	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	15q23	THSD4	rs34631960-C	NR	4E-8		2.33	[1.61-3.38]	Affymetrix, Illumina [8589102] (imputed)	N
1133	chr15	71840326	71840327	rs35194812	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	15q23	THSD4	rs35194812-T	0.84	1E-10		0.0075	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1133	chr15	71840326	71840327	rs35194812	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	15q23	THSD4	rs35194812-T	0.84	5E-7		0.0055	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1133	chr15	71854981	71854982	rs11072298	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	15q23	THSD4	rs11072298-A	0.182	7E-6		0.89	[0.83-0.95]	Illumina [516320]	N
1133	chr15	71857367	71857368	rs8040598	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q23	NR	rs8040598-G	NR	5E-6				NR [NR] (imputed)	N
1133	chr15	71857367	71857368	rs8040598	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q23	THSD4	rs8040598-A	0.8634	4E-7		0.1829	[0.11-0.25] unit increase	NR [NR] (imputed)	N
1133	chr15	71857367	71857368	rs8040598	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q23	NR	rs8040598-G	NR	5E-6				NR [NR] (imputed)	N
1133	chr15	71857367	71857368	rs8040598	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	15q23	THSD4	rs8040598-A	0.8668	1E-6		0.1666	[0.099-0.234] unit increase	NR [NR] (imputed)	N
1133	chr15	71860976	71860977	rs112087864	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 24)	3,566 European ancestry individuals	4,680 European ancestry individuals	15q23		rs112087864-T	0.309291655	7E-11				Illumina [7417619] (imputed)	N
1133	chr15	71861786	71861787	rs116917870	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q23	THSD4	rs116917870-T	0.9899	2E-7		0.3563	[0.22-0.49] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1133	chr15	71861786	71861787	rs116917870	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	15q23	THSD4	rs116917870-T	0.9902	4E-7		0.3304	[0.2-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1133	chr15	71876009	71876010	rs12591454	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	15q23	NR	rs12591454-?	NR	2E-8	(Quadrant I (Philtrum), Segment 33)	0.035864435	NR unit decrease	NR [7417619] (imputed)	N
1133	chr15	71878902	71878903	rs190930640	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	15q23	THSD4	rs190930640-A	0.0018	5E-6		0.9224	[0.53-1.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1133	chr15	71883929	71883930	rs4459504	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	15q23	NR	rs4459504-G	NR	8E-8		0.8938	unit increase	NR [9015039] (imputed)	N
1133	chr15	71904656	71904657	rs549159229	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	15q23	THSD4	rs549159229-C	0.9975	9E-6		0.9184	[0.51-1.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1133	chr15	71910228	71910229	rs79035353	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	15q23	NR	rs79035353-?	NR	4E-6		0.0901	[0.052-0.129] unit increase	Illumina [~ 7800000] (imputed)	N
1133	chr15	71918350	71918351	rs4331298	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	15q23	NR	rs4331298-?		3E-6		4.054	[2.45-5.66] unit increase	Illumina [~ 4900000] (imputed)	N
1133	chr15	71940617	71940618	rs8026249	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	15q23	THSD4	rs8026249-T	0.34	2E-7	(Outercanthal width)	0.525	[NR] unit increase	Affymetrix [311944]	N
1133	chr15	71940617	71940618	rs8026249	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	15q23	THSD4	rs8026249-T	0.34	2E-6	(Right eye tail length)	0.23	[NR] unit increase	Affymetrix [311944]	N
1134	chr15	72039250	72039251	rs201879533	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	15q23	THSD4	rs201879533-?	NR	4E-6	(adjusted)	5.6306844	[2.7-12.5]	Illumina [241551]	N
1134	chr15	72048897	72048898	rs56039380	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		THSD4	rs56039380-?	NR	8E-9	(male)	2.14641	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr15	72095642	72095643	rs7403126	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q23	MYO9A	rs7403126-C	0.0959235325196255	5E-6	(G_Ruminococcus_HB)	0.820643	[0.47-1.17] unit decrease	Illumina [7711310] (imputed)	N
1135	chr15	72103426	72103427	rs3784310	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q23	MYO9A	rs3784310-T	0.717902	4E-9		0.0131018	[0.0087-0.0175] unit increase	Affymetrix [NR] (imputed)	N
1135	chr15	72105035	72105036	rs372460062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs372460062-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1135	chr15	72107173	72107174	rs113441626	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	15q23	NR	rs113441626-?	NR	8E-8	(Native Hawaiian)	1.3074	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1135	chr15	72108268	72108269	rs2723343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q23	NR	rs2723343-T	NR	1E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr15	72108268	72108269	rs2723343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q23	NR	rs2723343-T	NR	6E-15		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q23	NR2E3	rs11072332-T	0.226855	1E-16		0.021915413	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q23	NR2E3	rs11072332-T	0.226852	6E-16		0.021360781	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs11072332-T	0.252718	1E-18				Affymetrix, Illumina [24653286] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q23	NR	rs11072332-T	0.225441	1E-19		0.020031	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs11072332-T	0.251025	4E-20				Affymetrix, Illumina [24558453] (imputed)	N
1135	chr15	72108306	72108307	rs11072332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q23	NR	rs11072332-T	0.225447	1E-20		0.020689	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1135	chr15	72108930	72108931	rs5813668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q23	NR2E3	rs5813668-T	0.227459	2E-20		0.024562895	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr15	72112917	72112918	rs12898868	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q23	NR	rs12898868-T	0.25	3E-17		0.0178	[0.014-0.022] unit decrease	NR [NR]	N
1135	chr15	72117101	72117102	rs16956273	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q23	NR2E3, MYO9A	rs16956273-?	NR	1E-8		0.487	[0.33-0.65] unit decrease	Affymetrix [11100000] (imputed)	N
1135	chr15	72118776	72118777	rs2625529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q23	MYO9A	rs2625529-C	0.2283	5E-10		0.02634021	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1135	chr15	72121471	72121472	rs2723357	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	15q23	MYO9A	rs2723357-G	NR	3E-9		5.924	z-score increase	Illumina [632375]	N
1135	chr15	72142031	72142055	rs144106224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q23		rs144106224-T	NR	2E-24		0.0197	[0.016-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1135	chr15	72142031	72142055	rs144106224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q23		rs144106224-T	NR	2E-17		0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1135	chr15	72161402	72161403	rs12902421	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q23	MYO9A	rs12902421-T	0.97	3E-8		0.062	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1135	chr15	72169465	72169466	rs12050794	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	15q23	MYO9A, SENP8, NR2E3, GRAMD2	rs12050794-G		2E-6		0.2996	unit decrease	Illumina [5767231] (imputed)	N
1135	chr15	72218911	72218912	rs71395049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs71395049-?	NR	7E-34				NR [~ 8900000] (imputed)	N
1136	chr15	72227470	72227471	rs2306489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q23		rs2306489-A	NR	1E-17		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1136	chr15	72231681	72231682	rs2929511	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q23	GRAMD2, MYO9A, intergenic2E3, PKM, SENP8	rs2929511-C		1E-14		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1136	chr15	72241293	72241294	rs57686438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q23		rs57686438-G	NR	4E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1136	chr15	72241293	72241294	rs57686438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q23		rs57686438-G	0.275263	1E-10		0.0154239	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
1136	chr15	72242553	72242554	rs2415130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q23	NR	rs2415130-A	0.260607	8E-29				Affymetrix, Illumina [24332387] (imputed)	N
1136	chr15	72242553	72242554	rs2415130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q23	NR	rs2415130-A	0.235206	2E-24		0.022268	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1136	chr15	72246963	72246964	rs2929508	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q23	MYO9A	rs2929508-A	0.2608	4E-9		0.028981	[0.019-0.039] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1136	chr15	72302893	72302894	rs2957742	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	15q23	MYO9A	rs2957742-C	0.8	4E-8	(EA)	0.023571428	[0.015-0.032] unit increase	Illumina [1986983] (imputed)	N
1136	chr15	72307690	72307691	rs2957740	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q23	MYO9A	rs2957740-A	0.4119	3E-11		0.024	[0.017-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1136	chr15	72307690	72307691	rs2957740	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q23	NR	rs2957740-A	0.6012	2E-6	(women)	0.0232	[0.014-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1136	chr15	72307690	72307691	rs2957740	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q23	NR	rs2957740-A	0.5758	7E-6	(men)	0.0238	[0.013-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1136	chr15	72332916	72332917	rs2929517	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q23	SENP8	rs2929517-T	0.271003	4E-21		0.00559769	[0.0045-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
1137	chr15	72448581	72448582	rs71395064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q23	NR	rs71395064-A	NR	4E-9		0.0231	[0.015-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1137	chr15	72462254	72462255	rs34815962	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q23	GRAMD2	rs34815962-T		9E-10		0.044	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1137	chr15	72468855	72468856	rs181706692	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q23	GRAMD2	rs181706692-A	0.0016	5E-6		2.038	[1.17-2.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1137	chr15	72477749	72477750	rs117004810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q23		rs117004810-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1138	chr15	72498936	72498937	rs113920924	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	15q23	NR	rs113920924-?	NR	9E-6	(Native Hawaiian)	1.0445	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1138	chr15	72504058	72504059	rs8023703	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q23	PKM	rs8023703-A	0.77	4E-9		5.88	z-score increase	Affymetrix [4314223] (imputed)	N
1138	chr15	72504058	72504059	rs8023703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	15q23		rs8023703-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1138	chr15	72540179	72540180	rs55763892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	15q23		rs55763892-T	0.293207	4E-8		0.0188745	[0.012-0.026] unit increase	Illumina [13479135] (imputed)	N
1138	chr15	72544400	72544401	rs7183196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q23		rs7183196-?	NR	5E-28				NR [~ 8900000] (imputed)	N
1138	chr15	72551711	72551712	rs11637611	22833209	Hu X	2011-11-15	Transl Psychiatry	Genome-wide association study identifies multiple novel loci associated with disease progression in subjects with mild cognitive impairment.	Rate of cognitive decline in mild cognitive impairment (time interaction)	822 European ancestry individuals	NA	15q23	PARP6, MYO9A	rs11637611-C		1E-15				Illumina [233603]	N
1138	chr15	72575213	72575214	rs8027647	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q23	PARP6, CELF6	rs8027647-T	0.73	5E-8		5.46	z-score increase	Affymetrix [4312306] (imputed)	N
1138	chr15	72585170	72585171	rs569805536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q23	CELF6	rs569805536-A	0.0038	1E-10		0.1066	[0.074-0.139] unit increase	Affymetrix [18391927] (imputed)	N
1138	chr15	72600062	72600063	rs2959926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q23	RP11-106M3.5, CELF6, RP11-106M3.3, RP11-106M3.2	rs2959926-T	0.9737	1E-6		0.0999	[0.06-0.14] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1138	chr15	72602627	72602628	rs2959922	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q23		rs2959922-G	0.023361	5E-6		0.1024	[0.058-0.146] unit decrease	Affymetrix [15580782] (imputed)	N
1139	chr15	72687136	72687137	rs62017875	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Completion of the aide-memoire	361,501 European ancestry cases, 89,535 European ancestry controls	NA	15q23	NR	rs62017875-C	0.99	4E-8		1.14	[1.09, 1.20]	Affymetrix [39302896] (imputed)	N
1139	chr15	72687136	72687137	rs62017875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q23	NR	rs62017875-G	0.01045	5E-9	(APOC1)	0.04006	NR unit increase	Illumina [1671387] (imputed)	N
1139	chr15	72701024	72701025	rs12916185	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q24.1		rs12916185-C	0.08	2E-9		6.02	z score increase	Affymetrix [9061022] (imputed)	N
1140	chr15	72798177	72798178	rs2415140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs2415140-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1140	chr15	72811401	72811402	rs8038734	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	15q24.1	Intergenic	rs8038734-?	NR	6E-6		2.1375377	[NR]	Illumina [~ 5900000] (imputed)	N
1141	chr15	72980549	72980550	rs17753687	29472613	Warrier V	2018-02-22	Sci Rep	Genetic contribution to 'theory of mind' in adolescence.	Theory of mind score in adolescence (Emotional Triangles Task)	4,577 European ancestry adolescents	NA	15q24.1	BBS4	rs17753687-?	NR	9E-7				Illumina [8282911] (imputed)	N
1141	chr15	72994967	72994968	rs8033580	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	15q24.1	BBS4	rs8033580-T	0.33797	9E-6		1.264	[1.14 - 1.402]	Illumina [5400100] (imputed)	N
1141	chr15	73001313	73001314	rs11072384	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs11072384-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1141	chr15	73001313	73001314	rs11072384	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	15q24.1	NR	rs11072384-T	0.2143	2E-9		0.0129	[0.0088-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1142	chr15	73007892	73007893	rs730180	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q24.1	BBS4	rs730180-A	0.7356	3E-9		0.015	[0.01-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1142	chr15	73007892	73007893	rs730180	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q24.1	NA	rs730180-A	0.7917	2E-18		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1142	chr15	73022632	73022633	rs797003128	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	15q24.1	intergenic	rs797003128-C	NR	5E-6	(AA)	0.651	unit decrease	Illumina [at least 5086170] (imputed)	N
1142	chr15	73027477	73027478	rs2277598	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	15q24.1	BBS4	rs2277598-C	0.6276999999999999	2E-15		0.0148	[0.011-0.019] unit increase	Illumina [246328]	N
1142	chr15	73074889	73074890	rs11633022	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q24.1	ADPGK	rs11633022-C	0.384832	4E-14		0.0108928	[0.0081-0.0137] unit decrease	Affymetrix [12370749]	N
1142	chr15	73080730	73080731	rs4776613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q24.1		rs4776613-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1142	chr15	73082365	73082366	rs4777542	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q24.1	ADPGK	rs4777542-T	0.32	2E-7		0.029	[0.017-0.041] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1142	chr15	73082467	73082468	rs4776614	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q24.1	ADPGK	rs4776614-C	0.3268	2E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1142	chr15	73086152	73086153	rs397827688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q24.1		rs397827688-A	NR	4E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1142	chr15	73086730	73086731	rs12439200	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	15q24.1	NA	rs12439200-A	0.2194	5E-16		0.0163	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1142	chr15	73088868	73088869	rs8027181	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	15q24.1	ADPGK	rs8027181-A	1.0	3E-7	(Trans-ethnic initial)	0.0242	[0.014-0.034] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1142	chr15	73088868	73088869	rs8027181	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	15q24.1	NR	rs8027181-A	0.310703425786865	2E-9		0.019309552	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1142	chr15	73089624	73089625	rs6495017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs6495017-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1142	chr15	73091282	73091283	rs3850986	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q24.1	NR	rs3850986-G	0.3309	2E-10		0.016832523	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1142	chr15	73091282	73091283	rs3850986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q24.1		rs3850986-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q24.1	NR	rs7164727-C	NR	9E-10		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	ADPGK, BBS4	rs7164727-T	0.6537	8E-7		0.0208	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	ADPGK, BBS4	rs7164727-?	NR	4E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	ADPGK, BBS4	rs7164727-T	0.6537	1E-8		0.0215	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	ADPGK	rs7164727-T	0.6483	6E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q24.1	ADPGK	rs7164727-T	0.6483	6E-6		0.0174	[0.01-0.0248] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	ADPGK	rs7164727-T	0.6483	2E-7		0.0179	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1142	chr15	73093990	73093991	rs7164727	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q24.1	LOC100287559	rs7164727-T	0.686	9E-6	(EA, women)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1142	chr15	73093990	73093991	rs7164727	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q24.1	LOC100287559	rs7164727-T	0.686	7E-8	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1142	chr15	73093990	73093991	rs7164727	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q24.1	LOC100287559	rs7164727-T	0.671	4E-9		0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1142	chr15	73125991	73125992	rs7495694	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	15q24.1	ADPGK-AS1	rs7495694-G	0.02	1E-9		7.6	[NR]	Affymetrix [4893794] (imputed)	N
1143	chr15	73141495	73141496	rs4777557	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA6398 abundance in stool	5,959 Finnish ancestry individuals	NA	15q24.1		rs4777557-A	0.078527	3E-8		0.142654	[0.092-0.193] unit increase	Illumina [7980478] (imputed)	N
1143	chr15	73163686	73163687	rs138214306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs138214306-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1143	chr15	73176828	73176829	rs16957408	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q24.1	NR	rs16957408-?	NR	3E-9				Affymetrix [NR]	N
1143	chr15	73227248	73227249	rs7171864	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q24.1	NR	rs7171864-G	0.340693	6E-9		0.0122645	[0.0081-0.0164] unit decrease	NR [NR]	N
1143	chr15	73257724	73257725	rs1900901	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q24.1		rs1900901-A	0.31	3E-13		7.29	z score increase	Affymetrix [9061022] (imputed)	N
1143	chr15	73262690	73262691	rs2415209	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs2415209-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1143	chr15	73263048	73263049	rs8025665	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q24.1		rs8025665-G	0.31	1E-19		9.05	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr15	73300894	73300895	rs9806341	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q24.1	NR	rs9806341-T	0.2359	5E-13				NR [9056863] (imputed)	N
1144	chr15	73306573	73306574	rs7181555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q24.1		rs7181555-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1144	chr15	73326960	73326961	rs12903656	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q24.1	NEO1	rs12903656-C	0.101	6E-12	(Neogenin, NEO1.8900.28.3)	0.29	[0.21-0.37] unit increase	Affymetrix [10572788] (imputed)	N
1144	chr15	73334224	73334225	rs8040109	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q24.1	NEO1	rs8040109-A	0.7074	6E-9		0.024914	[0.017-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1144	chr15	73334734	73334735	rs79668346	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	15q24.1	NEO1	rs79668346-T	NR	7E-6		0.5124575	[0.29-0.74] unit decrease	Illumina [> 6200000] (imputed)	N
1144	chr15	73353174	73353175	rs6495046	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	15q24.1	NEO1	rs6495046-C	0.36	3E-10		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1144	chr15	73353174	73353175	rs6495046	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	15q24.1	NEO1	rs6495046-C	0.36	9E-9		0.033	[0.022-0.044] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1144	chr15	73381239	73381240	rs8026121	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q24.1	NEO1	rs8026121-G	0.55546875	9E-13	(NEO1, 8900_28_3)	0.17053291	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1145	chr15	73401140	73401141	rs78341827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q24.1		rs78341827-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1145	chr15	73408004	73408005	rs10467948	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NEO1	5,363 Icelandic ancestry individuals	NA	15q24.1		rs10467948-T	0.4359	1E-19		0.167149	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1145	chr15	73412979	73412979	rs11462324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q24.1	NEO1	rs11462324-CT	0.163143	5E-12		0.020874584	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr15	73413069	73413070	rs8037213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs8037213-G	0.898972	2E-14				Affymetrix, Illumina [22063850] (imputed)	N
1145	chr15	73431599	73431600	rs2415142	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q24.1		rs2415142-T	0.45	2E-14		7.64	z score increase	Affymetrix [9061022] (imputed)	N
1145	chr15	73431599	73431600	rs2415142	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q24.1	NR	rs2415142-T	0.4524	2E-15				NR [9056863] (imputed)	N
1145	chr15	73431599	73431600	rs2415142	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q24.1	NEO1, HCN4	rs2415142-?		5E-11				NR [7428630] (imputed)	N
1145	chr15	73438847	73438848	rs1564347	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.1		rs1564347-T	0.3433	2E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1145	chr15	73438847	73438848	rs1564347	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q24.1	Intergenic	rs1564347-T	0.3433	5E-9	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1145	chr15	73441431	73441432	rs8039418	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.1	NEO1	rs8039418-T	0.471	2E-8		0.0176	[0.011-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1145	chr15	73441431	73441432	rs8039418	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q24.1	NR	rs8039418-T	0.5071	2E-6	(men)	0.0238	[0.014-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1145	chr15	73447919	73447920	rs983067	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	15q24.1	NEO1	rs983067-T	0.3535	3E-8		0.011224413	[0.0072-0.0152] unit increase	Illumina [9339358] (imputed)	N
1145	chr15	73485159	73485160	rs11072405	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	15q24.1	BBS4, ADPGK, ADPGK-AS1, HCN4, C15orf60, NPTN	rs11072405-A	0.564379482293836	5E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1145	chr15	73485159	73485160	rs11072405	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	15q24.1	BBS4, ADPGK, ADPGK-AS1, HCN4, C15orf60, NPTN	rs11072405-A	0.564379482293836	1E-8		0.021156829	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1145	chr15	73507503	73507504	rs1812835	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	15q24.1	NEO1	rs1812835-A	0.417701	3E-6	(EA)	0.02527	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1145	chr15	73507503	73507504	rs1812835	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	15q24.1	NEO1	rs1812835-A	0.417701	2E-8	(EA)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1145	chr15	73507503	73507504	rs1812835	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	15q24.1	NEO1	rs1812835-A	0.417701	5E-10	(EA)	0.02527	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1145	chr15	73507503	73507504	rs1812835	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	15q24.1	NEO1	rs1812835-A	0.417701	5E-10		0.02527	[0.017-0.033] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1145	chr15	73530604	73530612	rs150712926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q24.1	NR	rs150712926-D	0.492136	4E-15		0.015731	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1145	chr15	73530604	73530612	rs150712926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q24.1	NR	rs150712926-D	0.492138	2E-19		0.018235	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1145	chr15	73530612	73530619	rs529850775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q24.1		rs529850775-G	NR	1E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1145	chr15	73530612	73530619	rs529850775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q24.1	NEO1	rs529850775-G	0.49238	8E-13		0.0163683	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr15	73530612	73530619	rs529850775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q24.1	NEO1	rs529850775-G	0.492371	1E-16		0.01840632	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1146	chr15	73580034	73580035	rs2680338	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q24.1	NEO1	rs2680338-A	0.5829	1E-16		0.016	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1146	chr15	73581443	73581444	rs489531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q24.1		rs489531-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1146	chr15	73586266	73586267	rs2252725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs2252725-C	0.464808	7E-12				Affymetrix, Illumina [24246363] (imputed)	N
1146	chr15	73592792	73592793	rs2680340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs2680340-A	0.44212	6E-16				Affymetrix, Illumina [20825802] (imputed)	N
1146	chr15	73592792	73592793	rs2680340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q24.1		rs2680340-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1146	chr15	73598606	73598607	rs531019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs531019-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1146	chr15	73618237	73618238	rs3826043	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q24.1	HCN4	rs3826043-C	0.570541	2E-9		0.0122106	[0.0082-0.0162] unit increase	Affymetrix [NR] (imputed)	N
1146	chr15	73618237	73618238	rs3826043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs3826043-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1146	chr15	73618308	73618309	rs2660824	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q24.1	NA	rs2660824-T	0.461	3E-10		0.0113	[0.0078-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
1146	chr15	73630685	73630686	rs478438	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q24.1	HCN4	rs478438-G	0.911974	2E-9		0.019656	[0.013-0.026] unit increase	NR [13737936] (imputed)	N
1146	chr15	73631700	73631701	rs8032565	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs8032565-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1146	chr15	73646593	73646594	rs11631816	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	15q24.1		rs11631816-A	0.09148	1E-5		1.43	[1.22-1.675]	Affymetrix [7975321] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	5E-8	(-124 ms)	0.041215	[0.026-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	5E-10	(-118 ms)	0.0454697	[0.031-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	4E-9	(-116 ms)	0.0431197	[0.028-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	4E-8	(-206 ms)	0.0420844	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	2E-8	(-114 ms)	0.0413497	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	1E-9	(-120 ms)	0.0447395	[0.03-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	1E-8	(-122 ms)	0.0423217	[0.027-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	1E-8	(-112 ms)	0.0416304	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q24.1	HCN4	rs7164883-A	0.839411	1E-8	(-110 ms)	0.0411528	[0.026-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1146	chr15	73652173	73652174	rs7164883	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	15q24.1	HCN4	rs7164883-G	0.16	3E-17		1.19	[1.14-1.24]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1146	chr15	73653484	73653485	rs2680344	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	15q24.1	HCN4	rs2680344-A	0.7758	3E-6	(EA)	0.046405	[0.026-0.067] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1146	chr15	73653484	73653485	rs2680344	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	15q24.1	HCN4	rs2680344-A	0.77772	5E-11	(EA)	0.024063	[0.017-0.031] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1146	chr15	73653484	73653485	rs2680344	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	15q24.1	HCN4	rs2680344-A	0.77772	3E-11		0.024063	[0.017-0.031] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1146	chr15	73653484	73653485	rs2680344	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	15q24.1	HCN4	rs2680344-A	0.780547	1E-10	(EA)	0.031864	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1147	chr15	73663902	73663903	rs7173389	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	15q24.1	HCN4	rs7173389-A	0.841075	2E-9		0.528388	[0.36-0.7] unit increase	Affymetrix [~ 7800000] (imputed)	N
1147	chr15	73663902	73663903	rs7173389	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	15q24.1	HCN4, NEO1	rs7173389-T	0.16	1E-32		0.5393	[0.45-0.63] unit decrease	Affymetrix [19941912] (imputed)	N
1147	chr15	73664722	73664723	rs8039168	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q24.1	HCN4	rs8039168-A	0.83	2E-12		0.6	[0.42-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1147	chr15	73664722	73664723	rs8039168	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	15q24.1	HCN4	rs8039168-A	0.8422	2E-11		0.6032	[0.43-0.78] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1147	chr15	73665505	73665506	rs4489968	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	15q24.1	HCN4	rs4489968-T	0.843	4E-20		0.513	[0.40-0.63] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1147	chr15	73667254	73667255	rs7172038	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q24.1	HCN4, REC114	rs7172038-G	0.17	2E-27	(EA)	1.11	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1147	chr15	73668045	73668046	rs7178084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	15q24.1		rs7178084-C	NR	6E-18		0.0993	[0.077-0.122] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1147	chr15	73669005	73669006	rs7183206	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	15q24.1	HCN4	rs7183206-A	0.15	8E-12		1.13	[1.09-1.18]	Affymetrix, Illumina [11795432] (imputed)	N
1147	chr15	73677263	73677264	rs74022964	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q24.1	HCN4	rs74022964-T	0.157	4E-36		1.12	[1.10-1.14]	Illumina [34740186] (imputed)	N
1147	chr15	73677263	73677264	rs74022964	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q24.1	HCN4, REC114	rs74022964-T	0.16	1E-27		1.11	[1.09-1.13]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1147	chr15	73729482	73729483	rs16957893	28100913	Ueta M	2017-01-19	J Hum Genet	Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	117 Japanese ancestry cases, 688 Japanese ancestry controls	52 East Asian ancestry cases, 302 East Asian ancestry controls	15q24.1	REC114, NPTN, CD276, LOC105370891	rs16957893-C	0.08	2E-8		5.61	3.08-10.21	Affymetrix [6714496] (imputed)	N
1147	chr15	73730682	73730683	rs142859932	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q24.1	Intergenic	rs142859932-G	0.991	3E-6	(AA)	0.487	NR unit increase	Illumina [NR] (imputed)	N
1147	chr15	73749607	73749608	rs11635553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q24.1	NR	rs11635553-G	0.99282491474212	9E-6	(IGP76)	1.0357	[0.58-1.49] unit increase	Illumina [~ 2500000] (imputed)	N
1147	chr15	73749607	73749608	rs11635553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q24.1	NR	rs11635553-G	0.992814619440459	6E-6	(IGP75)	1.0594	[0.6-1.52] unit decrease	Illumina [~ 2500000] (imputed)	N
1147	chr15	73749607	73749608	rs11635553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q24.1	NR	rs11635553-G	0.992804206752874	4E-6	(IGP74)	1.0812	[0.62-1.54] unit decrease	Illumina [~ 2500000] (imputed)	N
1147	chr15	73749622	73749623	rs77238543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q24.1		rs77238543-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1147	chr15	73765585	73765586	rs140159717	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	15q24.1	NR	rs140159717-?	NR	2E-8	(Clostridium_xylanovorans)	0.507085	[0.34-0.68] unit increase	Illumina [5293637] (imputed)	N
1147	chr15	73782921	73782922	rs142592509	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs142592509-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1148	chr15	73833599	73833600	rs7176074	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q24.1	REC114	rs7176074-T	0.0509	7E-10		0.0339	[0.023-0.045] unit increase	Affymetrix [19819130] (imputed)	N
1148	chr15	73896367	73896368	rs77982247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.1	NR	rs77982247-A	NR	3E-17		0.033	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1149	chr15	73934210	73934211	rs143756708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs143756708-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1149	chr15	73973661	73973662	rs57909886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q24.1		rs57909886-C	NR	3E-17		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1149	chr15	73977335	73977336	rs8032727	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	15q24.1	CD276	rs8032727-?	NR	4E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix [21347608] (imputed)	N
1149	chr15	73977335	73977336	rs8032727	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	15q24.1	CD276	rs8032727-?	NR	2E-17		0.0035	[0.0027-0.0043] unit increase	Affymetrix [21347608] (imputed)	N
1149	chr15	73978336	73978337	rs8038465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q24.1	NR	rs8038465-T	0.42470600000000003	3E-10		0.00511433	[0.0035-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
1149	chr15	73978336	73978337	rs8038465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q24.1	NR	rs8038465-T	0.424956	5E-10		0.00660829	[0.0043-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
1149	chr15	73978336	73978337	rs8038465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q24.1	NR	rs8038465-T	0.42470600000000003	6E-6		0.00421128	[0.0024-0.0061] unit increase	Affymetrix [16582965] (imputed)	N
1149	chr15	73978336	73978337	rs8038465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q24.1	NR	rs8038465-T	0.424956	5E-8		0.00617586	[0.0037-0.0086] unit increase	Affymetrix [16582614] (imputed)	N
1149	chr15	73978336	73978337	rs8038465	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	15q24.1	CD276	rs8038465-T	0.39	1E-9		2.4	[1.80-3.00] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1149	chr15	73979506	73979507	rs67257650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	15q24.1		rs67257650-T	NR	7E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1149	chr15	73979506	73979507	rs67257650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q24.1		rs67257650-T	NR	1E-61		0.0312	[0.027-0.035] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1149	chr15	73979506	73979507	rs67257650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	15q24.1		rs67257650-T	0.481759	6E-12		0.0238576	[0.017-0.031] unit increase	Illumina [13476165] (imputed)	N
1149	chr15	73979506	73979507	rs67257650	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q24.1	CD276	rs67257650-C	0.575509	6E-70		0.00905262	[0.008-0.0101] unit decrease	Affymetrix [13995440] (imputed)	N
1149	chr15	73982335	73982336	rs8041181	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q24.1	CD276	rs8041181-T	0.43	2E-16		8.24	z-score increase	Affymetrix [4314223] (imputed)	N
1149	chr15	73982335	73982336	rs8041181	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	15q24.1	CD276	rs8041181-?		8E-12		0.0271	[0.019-0.035] unit decrease	Illumina [31500000] (imputed)	N
1149	chr15	73985222	73985223	rs2127015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q24.1		rs2127015-C	NR	2E-20		0.0173	[0.014-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1149	chr15	73985222	73985223	rs2127015	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q24.1	CD276	rs2127015-T	0.4938	3E-22		0.00384296	[0.0031-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
1149	chr15	73985222	73985223	rs2127015	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q24.1	CD276	rs2127015-C	0.51	2E-19		9.0	z-score increase	Affymetrix [4312306] (imputed)	N
1149	chr15	73986263	73986264	rs12594627	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	15q24.1	CD276	rs12594627-?	NR	1E-9		0.02472	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1149	chr15	73988651	73988652	rs11852484	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	15q24.1	NR	rs11852484-A	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
1149	chr15	74010429	74010430	rs4404022	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q24.1		rs4404022-A	0.587	5E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1149	chr15	74010429	74010430	rs4404022	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q24.1	NR	rs4404022-T	0.404	2E-12		0.00780517	[0.0056-0.01] unit increase	NR [9732723] (imputed)	N
1149	chr15	74012408	74012409	rs1038093	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	15q24.1		rs1038093-?	NR	1E-9		0.0184	unit increase	NR [NR]	N
1149	chr15	74012408	74012409	rs1038093	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q24.1	NR	rs1038093-T	0.6282	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1149	chr15	74012408	74012409	rs1038093	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q24.1	NR	rs1038093-C	0.377	2E-8		0.00851711	[0.0055-0.0115] unit increase	NR [9732723] (imputed)	N
1149	chr15	74012436	74012437	rs1038094	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	15q24.1	CD276	rs1038094-G	NR	9E-6		1.27	[NR]	Affymetrix [703019]	N
1149	chr15	74016621	74016622	rs4886520	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	15q24.1	C15orf59, CD276, LOC101929221, NPTN, NPTN-IT1, REC114	rs4886520-C	0.5532	7E-6		1.1175066		Illumina [8265319] (imputed)	N
1149	chr15	74023637	74023638	rs28627084	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	15q24.1	CD276, C15orf59	rs28627084-C	0.888	2E-6		1.0879499		NR [9372253] (imputed)	N
1149	chr15	74023773	74023774	rs12913243	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q24.1	C15orf59	rs12913243-A	0.612	3E-11		0.008	[0.0056-0.0104] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1149	chr15	74028284	74028285	rs4887111	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q24.1	NA	rs4887111-A	0.6186	3E-8	(Female)	1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1149	chr15	74044196	74044197	rs28485305	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	15q24.1		rs28485305-C	0.631	3E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1149	chr15	74046662	74046663	rs4887140	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	15q24.1	C15orf59, TBC1D21	rs4887140-?		7E-8	(SI)	0.31	[0.11-0.51] unit increase	Illumina [693128]	N
1149	chr15	74048767	74048768	rs60833441	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q24.1	NR	rs60833441-G	0.461	2E-8		0.014276642	[0.0093-0.0193] unit decrease	NR [~ 10000000] (imputed)	N
1150	chr15	74064197	74064198	rs545973460	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	15q24.1	C15orf59	rs545973460-A	0.34	4E-7		0.028	[0.018-0.038] unit increase	Affymetrix [NR] (imputed)	N
1150	chr15	74092776	74092777	rs8030494	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	15q24.1	C15orf59-AS1	rs8030494-A	0.606	1E-8		0.0545	[0.036-0.073] unit increase	NR [9744772] (imputed)	N
1150	chr15	74097900	74097901	rs16958292	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q24.1	NR	rs16958292-G	0.135396201420662	2E-8		0.0075745857	[0.0049-0.0102] unit decrease	NR [NR]	N
1150	chr15	74097900	74097901	rs16958292	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	15q24.1	NR	rs16958292-G	0.135396201420662	3E-8		0.00922132	[0.006-0.0125] unit decrease	NR [NR]	N
1150	chr15	74097900	74097901	rs16958292	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q24.1	NR	rs16958292-G	0.135396201420662	3E-8		0.011973888	[0.0078-0.0162] unit decrease	NR [NR]	N
1150	chr15	74097900	74097901	rs16958292	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	15q24.1	NR	rs16958292-G	0.135396201420662	2E-8		0.0076817544	[0.005-0.0104] unit decrease	NR [NR]	N
1150	chr15	74101404	74101405	rs17188111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q24.1		rs17188111-C	NR	2E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1150	chr15	74103959	74103960	rs117897666	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	End-stage renal disease in type 2 diabetes	371 European ancestry cases, 2,076 European ancestry controls	1,089 European ancestry cases, 5,311 European ancestry controls, 877 Asian cases, 4,861 Asian controls, 20 Chinese ancestry cases, 149 Chinese ancestry controls	15q24.1	NR	rs117897666-?		3E-7	(EA)	3.02	[0.95-9.59]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1150	chr15	74103959	74103960	rs117897666	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	15q24.1	NR	rs117897666-?		3E-7	(EA)	3.02	[0.95-9.59]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1150	chr15	74113006	74113007	rs12900404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	RP11-24D15.1	rs12900404-C	NR	6E-10		0.0310742	[0.021-0.041] unit decrease	Affymetrix [323123] (imputed)	N
1150	chr15	74124542	74124543	rs4886425	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q24.1	TBC1D21	rs4886425-A	0.1706	6E-10		0.0027	[0.0017-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1150	chr15	74133412	74133413	rs11855112	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	TBC1D21	rs11855112-C	0.129	3E-8		0.049	NR cups per day increase	NR [NR]	N
1150	chr15	74138821	74138822	rs1452389	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	15q24.1	NR	rs1452389-?	NR	1E-6		0.0085268	[0.0051-0.012] unit decrease	Affymetrix [805426] (imputed)	N
1150	chr15	74148431	74148432	rs28379895	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	15q24.1	NR	rs28379895-T	0.495	2E-8		0.93725	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1150	chr15	74151082	74151083	rs56027559	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	15q24.1	RP11-24D15.1	rs56027559-?	NR	8E-6		2.77	[1.86-4.12]	Illumina [654642] (imputed)	N
1150	chr15	74160102	74160103	rs921541	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	15q24.1		rs921541-?	NR	2E-7				Illumina [3311160] (imputed)	N
1150	chr15	74160102	74160103	rs921541	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	15q24.1		rs921541-?	NR	9E-7				Affymetrix, Illumina [3311160] (imputed)	N
1150	chr15	74163022	74163023	rs744617	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q24.1	NR	rs744617-?	NR	5E-9				Affymetrix [NR]	N
1150	chr15	74171367	74171368	rs2084851	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q24.1	NR	rs2084851-?	NR	4E-6		0.0944735	[0.054-0.135] unit increase	NR [13958389] (imputed)	N
1150	chr15	74176556	74176557	rs16958445	24938310	Nakano M	2014-06-18	Sci Rep	Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population.	Exfoliation glaucoma or exfoliation syndrome	201 Japanese ancestry cases, 697 Japanese ancestry controls	121 Japanese ancestry cases, 263 Japanese ancestry controls	15q24.1	TBC1D21	rs16958445-G	0.834	2E-16		5.18	[3.37-7.94]	Affymetrix [652792]	N
1151	chr15	74187936	74187937	rs12914489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q24.1	NA	rs12914489-A	0.0836	9E-11		0.0172	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
1151	chr15	74198180	74198181	rs34641928	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	15q24.1	TBC1D21	rs34641928-A	0.2327	8E-9		5.78	z score decrease	NR [10847151] (imputed)	N
1151	chr15	74207694	74207695	rs62004865	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q24.1	LOXL1	rs62004865-T	0.894058	1E-9		0.0135621	[0.0092-0.018] unit decrease	Affymetrix [12370749]	N
1151	chr15	74211716	74211717	rs7177530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1-AS1	rs7177530-T	NR	3E-12		0.0202972	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1151	chr15	74218465	74218466	rs16958477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q24.1		rs16958477-C	NR	6E-58		0.0245	[0.022-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1151	chr15	74218465	74218466	rs16958477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1-AS1, LOXL1	rs16958477-C	NR	3E-11		0.0193969	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1151	chr15	74219581	74219582	rs3825942	17690259	Thorleifsson G	2007-08-09	Science	Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.	Glaucoma (exfoliation)	75 European ancestry cases, 14,474 European ancestry controls	199 European ancestry cases, 198 European ancestry controls	15q24.1	LOXL1	rs3825942-G	0.85	3E-21		20.1	[10.80-37.41]	Illumina [304250]	N
1151	chr15	74221156	74221157	rs1550436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q24.1	LOXL1	rs1550436-T	NR	2E-10		0.0196355	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1151	chr15	74221156	74221157	rs1550436	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	15q24.1	LOXL1	rs1550436-C	0.532417	5E-19		0.962018	NR	Affymetrix [~ 9600000] (imputed)	N
1151	chr15	74221297	74221298	rs1550437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	15q24.1		rs1550437-T	NR	5E-21		0.1197	[0.095-0.145] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1151	chr15	74221297	74221298	rs1550437	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	15q24.1	LOXL1-AS1	rs1550437-T	NR	2E-8		0.893865	[0.86-0.93]	Illumina [NR] (imputed)	N
1151	chr15	74221297	74221298	rs1550437	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	15q24.1	LOXL1	rs1550437-T	NR	4E-13		0.0679	unit decrease	Illumina [15409056] (imputed)	N
1151	chr15	74222042	74222043	rs8034017	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	15q24.1	LOXL1-AS1	rs8034017-A	NR	1E-9		1.1394	[1.1-1.18]	Illumina [NR] (imputed)	N
1151	chr15	74222201	74222202	rs2165241	29278698	Zagajewska K	2017-12-23	Exp Eye Res	GWAS links variants in neuronal development and actin remodeling related loci with pseudoexfoliation syndrome without glaucoma.	Pseudoexfoliation syndrome	103 European ancestry cases, 106 European ancestry controls	NA	15q24.1	LOXL1	rs2165241-?	NR	3E-10		4.17	[2.70-6.67]	Illumina [NR]	N
1151	chr15	74222986	74222987	rs1078967	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q24.1	NR	rs1078967-T	0.1518	6E-9		0.4169	[0.28-0.56] unit increase	Illumina [6200000] (imputed)	N
1151	chr15	74222986	74222987	rs1078967	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q24.1	NR	rs1078967-T	0.1518	1E-7	(East Asian)	0.4796	[0.3-0.66] unit increase	Illumina [6200000] (imputed)	N
1151	chr15	74222986	74222987	rs1078967	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	15q24.1	NR	rs1078967-T	0.1518	1E-6	(East Asian)	0.2982	[0.18-0.42] unit increase	Illumina [6200000] (imputed)	N
1151	chr15	74223117	74223118	rs62004866	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q24.1	LOXL1	rs62004866-C	0.8865	6E-10		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
1151	chr15	74223429	74223430	rs28588430	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q24.1	LOXL1	rs28588430-?		2E-18				Affymetrix, Illumina [NR] (imputed)	N
1151	chr15	74223500	74223508	rs150025731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	15q24.1		rs150025731-A	0.539709345	3E-15		0.12981397	[0.098-0.162] unit increase	Illumina [13429686] (imputed)	N
1151	chr15	74223500	74223508	rs150025731	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	15q24.1	LOXL1	rs150025731-?	NR	3E-10		0.075	[0.098-0.052] unit decrease	Illumina [12039492] (imputed)	N
1151	chr15	74223620	74223620	rs5813732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs5813732-CT	NR	2E-8		0.0168966	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1151	chr15	74223620	74223620	rs5813732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs5813732-CT	NR	2E-13		0.0221568	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1151	chr15	74223620	74223620	rs5813732	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	15q24.1		rs5813732-CT	0.549844713	4E-11		1.1354879	[1.093388137-1.17920882]	Illumina [8919992] (imputed)	N
1151	chr15	74223715	74223716	rs28522673	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q24.1	LOXL1	rs28522673-?	NR	2E-11		0.0437624	[0.031-0.057] unit increase	Illumina [4804024] (imputed)	N
1151	chr15	74223715	74223716	rs28522673	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q24.1	LOXL1, LOXL1-AS1	rs28522673-C	0.17	3E-6		0.039	[0.023-0.055] unit increase	Affymetrix [7947838] (imputed)	N
1151	chr15	74224995	74224996	rs4886776	25706626	Aung T	2015-02-23	Nat Genet	A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.	Exfoliation syndrome	1,484 Japanese ancestry cases, 1,188 Japanese ancestry controls	1,530 East Asian ancestry cases, 6,230 East Asian ancestry controls, 1,064 Southern Indian ancestry cases, 3,536 Southern Indian ancestry controls, 140 Hispanic cases, 233 Hispanic controls, 347 Middle Eastern ancestry cases, 1,108 Middle Eastern ancestry controls, 3,588 European ancestry cases, 9,012 European ancestry controls, 102 South African Black cases, 379 South African Black controls, 50 Uighur cases, 49 Uighur controls, 80 cases, 180 controls	15q24.1	LOXL1	rs4886776-A	NR	5E-29				Illumina [581023]	N
1151	chr15	74224995	74224996	rs4886776	25706626	Aung T	2015-02-23	Nat Genet	A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.	Exfoliation syndrome	1,484 Japanese ancestry cases, 1,188 Japanese ancestry controls	1,530 East Asian ancestry cases, 6,230 East Asian ancestry controls, 1,064 Southern Indian ancestry cases, 3,536 Southern Indian ancestry controls, 140 Hispanic cases, 233 Hispanic controls, 347 Middle Eastern ancestry cases, 1,108 Middle Eastern ancestry controls, 3,588 European ancestry cases, 9,012 European ancestry controls, 102 South African Black cases, 379 South African Black controls, 50 Uighur cases, 49 Uighur controls, 80 cases, 180 controls	15q24.1	LOXL1	rs4886776-A	NR	2E-217	(Japanese)	9.87	[NR]	Illumina [581023]	N
1151	chr15	74225387	74225388	rs4886778	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	15q24.1	NR	rs4886778-?	NR	2E-9	(right lateral orbitofrontal)			NR [9227495] (imputed)	N
1151	chr15	74225387	74225388	rs4886778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q24.1	NR	rs4886778-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1151	chr15	74225387	74225388	rs4886778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q24.1	NR	rs4886778-?	NR	1E-26				Affymetrix [~ 8270000] (imputed)	N
1151	chr15	74226707	74226708	rs2028386	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q24.1	NR	rs2028386-C	0.4838	3E-12		0.0126	[0.0091-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1151	chr15	74226707	74226708	rs2028386	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q24.1	LOXL1	rs2028386-G	0.494876665152033	7E-7		0.0026624	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1151	chr15	74226764	74226765	rs4337252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q24.1		rs4337252-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1151	chr15	74226764	74226765	rs4337252	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q24.1	LOXL1	rs4337252-C	0.5	7E-9		1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1151	chr15	74227036	74227037	rs2028387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	15q24.1		rs2028387-C	NR	1E-11		0.0951	[0.067-0.123] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q24.1	LOXL1	rs4886782-?	NR	7E-14		0.037250843	[0.027-0.047] unit decrease	Illumina [27896057] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs4886782-?	NR	6E-82				NR [~ 8900000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6305000000000001	7E-11		0.0252	[0.018-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6305000000000001	2E-10	(women)	0.0369	[0.026-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6305000000000001	1E-9	(men)	0.0352	[0.024-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6194	4E-10	(EA)	0.025	[0.017-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6194	1E-9	(EA, men)	0.0367	[0.025-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6375	5E-8	(women)	0.0353	[0.023-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6305000000000001	1E-9		0.0269	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6292	6E-9	(men)	0.0377	[0.025-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6213	2E-8	(EA, men)	0.0372	[0.024-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q24.1	LOXL1	rs4886782-G	0.6194	4E-9	(EA)	0.0267	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-?	0.6305000000000001	6E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-?	0.6305000000000001	3E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-?	0.6305000000000001	2E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-?	0.6194	2E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q24.1	LOXL1	rs4886782-?	0.6194	1E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	4E-7	(men)	0.0558	[0.034-0.077] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	5E-6	(men)	0.0283	[0.016-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	2E-8		0.0231	[0.015-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	8E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	1E-9		0.0228	[0.015-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q24.1	LOXL1	rs4886782-A	0.3642	1E-10	(men)	0.0344	[0.024-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q24.1	LOXL1	rs4886782-A	0.3726	6E-12	(EA)	0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1151	chr15	74228809	74228810	rs4886782	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q24.1	LOXL1	rs4886782-A	0.3726	3E-10	(EA, men)	0.0315	[0.022-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1151	chr15	74229064	74229065	rs893817	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q24.1		rs893817-A	0.6433	2E-10		0.10217281	[0.07-0.134] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1151	chr15	74229064	74229065	rs893817	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	15q24.1	LOXL1	rs893817-G	0.37	6E-12		0.0061	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1151	chr15	74229064	74229065	rs893817	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	15q24.1	LOXL1	rs893817-G	0.37	3E-9		0.00536	[0.0036-0.0071] unit increase	Affymetrix [at least 8002429] (imputed)	N
1151	chr15	74229064	74229065	rs893817	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	15q24.1	LOXL1	rs893817-G	0.34	3E-6		0.02	[0.01-0.03] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1151	chr15	74229194	74229195	rs893818	24938310	Nakano M	2014-06-18	Sci Rep	Novel common variants and susceptible haplotype for exfoliation glaucoma specific to Asian population.	Exfoliation glaucoma or exfoliation syndrome	201 Japanese ancestry cases, 697 Japanese ancestry controls	121 Japanese ancestry cases, 263 Japanese ancestry controls	15q24.1	LOXL1	rs893818-T	0.535	3E-84		20.94	[13.98-31.39]	Affymetrix [652792]	N
1151	chr15	74229523	74229524	rs893819	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q24.1	NR	rs893819-A		3E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
1151	chr15	74230782	74230786	rs145335218	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q24.1	LOXL1	rs145335218-G	0.3254	2E-6		0.0354	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1151	chr15	74231438	74231439	rs12440667	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	15q24.1	LOXL1	rs12440667-C	0.5162	4E-6		1.0590752	[1.03-1.09]	Affymetrix, Illumina [37144863] (imputed)	N
1151	chr15	74231438	74231439	rs12440667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q24.1		rs12440667-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	3E-26	(females)	0.03214	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	2E-21		0.0224	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	1E-18	(females)	0.02739	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	1E-14		0.01841	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	5E-8		0.01165	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74232436	74232437	rs12905253	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q24.1	LOXL1	rs12905253-A	0.459048	1E-6	(females)	0.0117	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1151	chr15	74234081	74234082	rs11638944	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q24.1	NR	rs11638944-G	0.470532	5E-9		0.040119	[0.027-0.053] unit increase	Affymetrix [17914406] (imputed)	N
1151	chr15	74234901	74234902	rs12441130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs12441130-C	NR	3E-8		0.0156454	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1151	chr15	74234901	74234902	rs12441130	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q24.1		rs12441130-?	NR	1E-9		0.0126142	[0.0085-0.0167] unit increase	Affymetrix [20259828] (imputed)	N
1151	chr15	74235703	74235704	rs11631579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs11631579-G	NR	1E-17		0.0244568	[0.019-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1151	chr15	74235703	74235704	rs11631579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs11631579-G	NR	4E-8		0.0157253	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1151	chr15	74241505	74241506	rs750460	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q24.1	PML	rs750460-?	NR	4E-12	(Conditioned on rs5742915)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1151	chr15	74242382	74242383	rs66473812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs66473812-A	NR	3E-8		0.0211645	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1151	chr15	74243011	74243012	rs60579378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q24.1	LOXL1	rs60579378-A	NR	2E-10		0.0189339	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1151	chr15	74243011	74243012	rs60579378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q24.1	LOXL1	rs60579378-A	NR	7E-9		0.0186274	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1151	chr15	74243743	74243744	rs11072450	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q24.1	NR	rs11072450-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1151	chr15	74245006	74245007	rs7175324	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q24.1	NR	rs7175324-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1151	chr15	74245485	74245486	rs12442139	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	15q24.1	NR	rs12442139-?	NR	1E-10		0.1608	NR	Illumina [802276]	N
1151	chr15	74247930	74247931	rs11072452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q24.1		rs11072452-T	NR	2E-8		0.0481	[0.031-0.065] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1151	chr15	74247930	74247931	rs11072452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q24.1		rs11072452-T	0.343876868	4E-8		0.07674533	[0.049-0.104] unit increase	Illumina [13426705] (imputed)	N
1151	chr15	74251514	74251515	rs72745376	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	15q24.1		rs72745376-?	NR	4E-11				Affymetrix [NR] (imputed)	N
1151	chr15	74252496	74252496	rs140909252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q24.1		rs140909252-AT	0.172572461	4E-8		0.08639134	[0.056-0.117] unit increase	Illumina [13427711] (imputed)	N
1151	chr15	74255655	74255656	rs11072457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	LOXL1	rs11072457-C	NR	1E-9		0.0244609	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1151	chr15	74275675	74275676	rs2507	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q24.1	STOML1	rs2507-A	0.7115	7E-7		0.0303	[0.018-0.042] unit decrease	NR [8041861] (imputed)	N
1151	chr15	74278125	74278126	rs35364449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q24.1		rs35364449-T	NR	4E-12		0.0259	[0.019-0.033] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1151	chr15	74278125	74278126	rs35364449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	STOML1	rs35364449-T	NR	2E-13		0.0361512	[0.027-0.046] unit decrease	Affymetrix [323123] (imputed)	N
1151	chr15	74278125	74278126	rs35364449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs35364449-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1151	chr15	74278125	74278126	rs35364449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q24.1		rs35364449-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1151	chr15	74286928	74286929	rs5742914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.1	STOML1	rs5742914-T	NR	1E-8		0.0249081	[0.016-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1151	chr15	74302526	74302526	rs536738558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs536738558-A	NR	1E-8		0.0177998	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1151	chr15	74305965	74305966	rs8039584	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		15q24.1	PML	rs8039584-?	0.044	5E-8			[NR]	Affymetrix, Illumina [152234]	N
1151	chr15	74311480	74311481	rs11072467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q24.1	NR	rs11072467-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1152	chr15	74328115	74328116	rs743580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q24.1	PML	rs743580-G	0.489919	2E-9		0.013328773	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr15	74328115	74328116	rs743580	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q24.1	NR	rs743580-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1152	chr15	74328115	74328116	rs743580	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	15q24.1	PML	rs743580-A	0.51051	1E-6		0.0215485	[0.013-0.03] SD units increase	NR [9926106] (imputed)	N
1152	chr15	74328115	74328116	rs743580	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (fraction of time with accelerations >425 milli-gravities)	90,667 European ancestry individuals	NA	15q24.1	PML	rs743580-A	0.51	1E-9		0.025	fraction of time increase	Affymetrix [11800000] (imputed)	N
1152	chr15	74328140	74328141	rs743581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.1	PML	rs743581-T	NR	3E-9		0.0174323	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1152	chr15	74328140	74328141	rs743581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs743581-T	NR	6E-11		0.0208811	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1152	chr15	74328575	74328576	rs9479	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q24.1	NR	rs9479-G	0.5244	4E-13		0.0271	[0.02-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1152	chr15	74328575	74328576	rs9479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q24.1		rs9479-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1152	chr15	74328575	74328576	rs9479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.1		rs9479-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1152	chr15	74329192	74329193	rs7183908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q24.1	NA	rs7183908-T	0.5074	8E-16		0.0158	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1152	chr15	74329192	74329193	rs7183908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	15q24.1	NR	rs7183908-T	0.5074	8E-16		0.0158	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1152	chr15	74331658	74331659	rs12917449	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q24.1	NR	rs12917449-C	0.197	5E-10		0.0364	[0.025-0.048] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1152	chr15	74331658	74331659	rs12917449	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q24.1	NR	rs12917449-C	0.1939	3E-8		1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1152	chr15	74333412	74333413	rs876383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs876383-A	NR	5E-12		0.0212867	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.1	PML	rs5742915-C	NR	6E-9		0.0164066	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs5742915-C	NR	1E-15		0.0246316	[0.019-0.031] unit increase	Affymetrix [323123] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q24.1	PML	rs5742915-T	0.5395	9E-39		0.0248	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	15q24.1	PML	rs5742915-T	0.54	3E-23		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	15q24.1	PML	rs5742915-T	0.54	2E-18		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q24.1	PML	rs5742915-C	0.456106	9E-9		0.01476	[0.0097-0.0198] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q24.1		rs5742915-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q24.1		rs5742915-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs5742915-?	NR	7E-88				NR [~ 8900000] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q24.1	NR	rs5742915-?	NR	3E-8		0.12192	[0.079-0.165] unit increase	Affymetrix [7794483] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q24.1	PML	rs5742915-T	0.5428	4E-6		0.0294	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q24.1	PML	rs5742915-T	0.535	2E-29		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	15q24.1	PML	rs5742915-C	0.45	2E-14		1.34	[1.25-1.45]	Illumina [2487078] (imputed)	N
1152	chr15	74336632	74336633	rs5742915	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q24.1	PML	rs5742915-T	0.54	1E-15		0.031	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1152	chr15	74338938	74338939	rs6772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs6772-C	NR	3E-9		0.0206484	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1152	chr15	74340335	74340336	rs4886860	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	15q24.1	PML	rs4886860-G	0.23362	3E-12		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1152	chr15	74340335	74340336	rs4886860	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	15q24.1	PML	rs4886860-G	0.23362	9E-11		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1152	chr15	74345814	74345814	rs545854307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	PML	rs545854307-C	NR	4E-12		0.0219194	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1152	chr15	74349986	74349987	rs56007454	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q24.1	chr15mb74	rs56007454-C	0.030106756	7E-6		0.3689	[0.21-0.53] unit increase	Affymetrix [~ 9800000] (imputed)	N
1153	chr15	74466270	74466271	rs923118	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q24.1	ISLR2	rs923118-G	0.75828125	2E-11	(ISLR2, 8528_74_3)	0.19576925	[0.14-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1153	chr15	74467328	74467329	rs148769100	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	15q24.1	ISLR	rs148769100-A	0.417	2E-11		0.02667		Illumina [243345]	N
1153	chr15	74467795	74467796	rs11854957	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISLR2	5,366 Icelandic ancestry individuals	NA	15q24.1		rs11854957-T	0.2456	6E-17		0.186883	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
1153	chr15	74467795	74467796	rs11854957	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q24.1	NR	rs11854957-T	0.22	1E-9		0.0136	[0.0091-0.0181] unit decrease	NR [NR]	N
1153	chr15	74467855	74467856	rs1052622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	RP11-665J16.1, ISLR	rs1052622-G	NR	2E-9		0.0196575	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1153	chr15	74472198	74472199	rs10910	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	15q24.1	STRA6	rs10910-T	0.69	1E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1153	chr15	74472715	74472716	rs351242	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	STRA6	rs351242-A	0.757	1E-19		0.062	NR cups per day decrease	NR [NR]	N
1153	chr15	74477238	74477239	rs351237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q24.1	STRA6	rs351237-A	0.62	2E-11		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1153	chr15	74480678	74480679	rs11635868	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	15q24.1	STRA6	rs11635868-T	0.09	7E-6				Illumina [4873750] (imputed)	N
1153	chr15	74497915	74497916	rs11638831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs11638831-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1153	chr15	74519083	74519084	rs112511609	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	15q24.1	NR	rs112511609-A	0.01788	4E-6		0.5299	[0.3-0.75] unit increase	Illumina [10677593] (imputed)	N
1153	chr15	74526595	74526596	rs6495091	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q24.1	NR	rs6495091-T	0.2881	5E-9				NR [9056863] (imputed)	N
1153	chr15	74528984	74528985	rs351175	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q24.1		rs351175-T	0.29	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
1153	chr15	74548772	74548773	rs9783698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.1	CCDC33	rs9783698-A	NR	6E-9		0.0200848	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
1153	chr15	74548772	74548773	rs9783698	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q24.1	CCDC33	rs9783698-A	0.15	3E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
1153	chr15	74548772	74548773	rs9783698	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q24.1	CCDC33	rs9783698-A	0.15	1E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1153	chr15	74550049	74550050	rs11635191	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q24.1	CCDC33, LOC729740, CYP11A1	rs11635191-A	0.217	1E-6		2.32	[1.64-3.3]	Illumina [1556551]	N
1153	chr15	74552741	74552742	rs12916871	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q24.1	CCDC33	rs12916871-A	0.5868	3E-11		0.1922	[0.14-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
1153	chr15	74557816	74557817	rs61653296	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	15q24.1	CCDC33	rs61653296-A	0.8008	1E-10		0.1405	[0.098-0.183] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1153	chr15	74558077	74558078	rs4886593	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	CCDC33	rs4886593-A	0.2	7E-13		0.052	NR cups per day decrease	NR [NR]	N
1154	chr15	74592861	74592862	rs12904134	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q24.1	NR	rs12904134-A	0.501	8E-6	(EA)	0.0286	[0.016-0.041] unit increase	Illumina [~ 11800000] (imputed)	N
1154	chr15	74601543	74601544	rs116264669	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Bacterial meningitis	2,345 European and unknown ancestry cases, 345,042 European and unknown ancestry controls	NA	15q24.1	CCDC33	rs116264669-?	NR	4E-8				Affymetrix, Illumina [6800000] (imputed)	N
1154	chr15	74607432	74607433	rs900800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q24.1		rs900800-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1154	chr15	74609377	74609378	rs2930313	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q24.1	NR	rs2930313-G	NR	5E-9		0.0257	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1154	chr15	74611780	74611781	rs2959011	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q24.1	ISLR2	rs2959011-T	0.342	3E-14	(Immunoglobulin superfamily containing leucine-rich repeat protein 2, ISLR2.13124.20.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
1154	chr15	74614912	74614913	rs1564783	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISLR2	5,366 Icelandic ancestry individuals	NA	15q24.1		rs1564783-C	0.3609	5E-17		0.162486	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1154	chr15	74615291	74615292	rs12440952	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q24.1	NA	rs12440952-G		1E-9		0.0115717	[0.0079-0.0153] unit increase	Illumina [13288253] (imputed)	N
1154	chr15	74617593	74617594	rs200975846	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	15q24.1	NR	rs200975846-T	0.67	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1154	chr15	74633002	74633003	rs41556118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs41556118-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1154	chr15	74665621	74665622	rs4077582	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	CYP11A1	rs4077582-T	0.706	8E-15		0.05	NR cups per day increase	NR [NR]	N
1154	chr15	74666026	74666027	rs12900028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q24.1		rs12900028-C	NR	4E-10		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1154	chr15	74667952	74667953	rs35807116	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	15q24.1	SEMA7A	rs35807116-T	0.6061	1E-9		0.01388089	[0.0094-0.0184] unit increase	Affymetrix [11514936] (imputed)	N
1155	chr15	74711789	74711790	rs28362906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q24.1	NR	rs28362906-A	NR	5E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1155	chr15	74711789	74711790	rs28362906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs28362906-A	NR	5E-10		0.0314	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1155	chr15	74711789	74711790	rs28362906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.1	NR	rs28362906-A	NR	2E-9		0.0303	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr15	74711789	74711790	rs28362906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs28362906-A	NR	2E-9		0.0304	[0.02-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr15	74712936	74712937	rs28362901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	15q24.1		rs28362901-A	NR	4E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1155	chr15	74712936	74712937	rs28362901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	15q24.1	NR	rs28362901-A	NR	9E-10		0.0265	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1155	chr15	74712936	74712937	rs28362901	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q24.1	SEMA7A	rs28362901-C	0.911669	1E-12		0.0239698	[0.017-0.031] unit increase	Affymetrix [NR] (imputed)	N
1155	chr15	74712936	74712937	rs28362901	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q24.1	SEMA7A	rs28362901-C	0.911633	9E-13		0.0246903	[0.018-0.031] unit increase	Affymetrix [NR] (imputed)	N
1155	chr15	74716608	74716609	rs8036030	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	15q24.1	SEMA7A	rs8036030-?	NR	8E-11		0.041086	NR unit decrease	Affymetrix [464137]	N
1155	chr15	74716608	74716609	rs8036030	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q24.1	SEMA7A	rs8036030-?	0.61	8E-6	(No asthma)	1.1765	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1155	chr15	74717901	74717902	rs8023274	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q24.1	UBL7	rs8023274-?	NR	7E-6	(beta aminoisobutyric acid)	0.3352153	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1155	chr15	74744398	74744399	rs2289187	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	15q24.1	NR	rs2289187-G	0.48	4E-11		1.21		Illumina [803202]	N
1155	chr15	74748469	74748470	rs553827153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q24.1	UBL7	rs553827153-G	0.167229	3E-9		0.018525189	[0.012-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1155	chr15	74760540	74760541	rs111362998	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q24.1		rs111362998-A	0.94	2E-8		0.14	[-0.18--0.09] % decrease	Affymetrix [NR] (imputed)	N
1155	chr15	74782355	74782356	rs12909047	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs12909047-A	0.51	3E-7		5.15	Z-score increase	Illumina [~ 31000000] (imputed)	N
1155	chr15	74782355	74782356	rs12909047	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3-dimethylxanthine (theophylline) level)	5,261 European ancestry individuals	826 European ancestry individuals	15q24.1	CLK3, ARID3B, EDC3, CYP1A1	rs12909047-A	0.51	1E-8		5.7	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1155	chr15	74782355	74782356	rs12909047	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs12909047-A	0.51	1E-11		6.77	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1155	chr15	74807953	74807954	rs183794680	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	15q24.1	UBL7, ARID3B	rs183794680-T	0.996	6E-8		0.467647	[0.3-0.64] unit increase	Illumina [13519193] (imputed)	N
1155	chr15	74807953	74807954	rs183794680	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q24.1	Intergenic	rs183794680-T	NR	5E-6	(men)	0.449435	[0.26-0.64] unit increase	Illumina [13520550] (imputed)	N
1155	chr15	74807953	74807954	rs183794680	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q24.1	Intergenic	rs183794680-T	NR	1E-6		0.366486	[0.22-0.51] unit increase	Illumina [13520550] (imputed)	N
1155	chr15	74817688	74817689	rs35107470	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	15q24.1	ARIDB3B	rs35107470-G	0.324	4E-10		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
1155	chr15	74817688	74817689	rs35107470	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	15q24.1	ARID3B	rs35107470-G	0.324	4E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [up to 73355667] (imputed)	N
1155	chr15	74817688	74817689	rs35107470	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs35107470-A	0.68	3E-14		7.58	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1155	chr15	74817688	74817689	rs35107470	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3-dimethylxanthine (theophylline) level)	5,261 European ancestry individuals	826 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs35107470-A	0.68	2E-7		5.18	Z-score increase	Illumina [~ 31000000] (imputed)	N
1155	chr15	74817688	74817689	rs35107470	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs35107470-A	0.68	2E-16		8.2	Z-score increase	Illumina [~ 31000000] (imputed)	N
1155	chr15	74829820	74829821	rs12437988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs12437988-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1155	chr15	74837906	74837907	rs117419740	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	15q24.1	NR	rs117419740-?	NR	7E-6		3015.5752	NR unit decrease	Illumina [2379855]	N
1156	chr15	74865439	74865440	rs10459648	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	15q24.1	SEMA7A, UBL7, ARID3B, CLK3, EDC3, CCDC33, CYP11A1, TCONS_00023466	rs10459648-T	0.51	1E-23		1.5873016	[1.45-1.72]	Illumina [792342]	N
1156	chr15	74870044	74870045	rs8025068	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q24.1	ARID3B	rs8025068-?	NR	2E-15		0.023205122	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
1156	chr15	74888195	74888196	rs74781061	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	15q24.1	NR	rs74781061-G	0.121	1E-6		2.188	[1.579-3.032]	Illumina [274400]	N
1156	chr15	74889162	74889163	rs11072494	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	15q24.1	ARID3B	rs11072494-?	NR	2E-8		1.1904762	[1.05-1.33] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1156	chr15	74890980	74890981	rs62005807	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	15q24.1	CLK3, ARID3B, EDC3, CYP1A1	rs62005807-C	0.11	3E-11		6.65	Z-score increase	Illumina [~ 31000000] (imputed)	N
1156	chr15	74890980	74890981	rs62005807	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs62005807-C	0.11	3E-9		5.92	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1156	chr15	74899499	74899500	rs6495117	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	15q24.1	NR	rs6495117-A	0.48	6E-11		1.2048193	[NR]	Illumina [803202]	N
1156	chr15	74912327	74912328	rs11543198	25281661	Matsuda K	2014-10-03	Hum Mol Genet	Genome-wide association study identified SNP on 15q24 associated with bladder cancer risk in Japanese population.	Bladder cancer	531 Japanese ancestry cases, 5,581 Japanese ancestry conrols	592 Japanese ancestry cases, 6,964 Japanese ancestry controls, 3,508 European ancestry cases, 5,101 European ancestry controls	15q24.1	CLK3, CYP1A2	rs11543198-G	0.78	4E-9	(Japanese)	1.41	[1.26-1.59]	Illumina [554389]	N
1156	chr15	74914648	74914649	rs56298217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q24.1		rs56298217-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1156	chr15	74935893	74935894	rs4128436	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	CLK3, EDC3	rs4128436-T	0.081	2E-8		0.06	NR cups per day decrease	NR [NR]	N
1156	chr15	74942201	74942202	rs372370600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q24.1	EDC3	rs372370600-A	0.160112	4E-15		0.024759127	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr15	74944630	74944631	rs369364584	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	15q24.1	NR	rs369364584-?	NR	8E-6		0.854445	[0.48-1.23] unit increase	NR [13958389] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	15q24.1	CYP1A1	rs2470893-T	NR	8E-27		0.0231	[0.019-0.027] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	15q24.1	CYP1A1	rs2470893-T	0.3259	1E-26		0.0230342	[0.019-0.027] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	15q24.1	CYP1A1	rs2470893-T	NR	1E-9		1.0450869	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	15q24.1	CYP1A1	rs2470893-T	0.307	9E-11		0.0064	[0.0044-0.0084] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	15q24.1	CYP1A1	rs2470893-T	0.335	6E-16		0.01495	[0.011-0.019] unit increase	Affymetrix [11709857] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	15q24.1	CYP1A1	rs2470893-T	0.3318	4E-10		0.02388056	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2470893-T	0.33	4E-15		7.85	Z-score increase	Illumina [~ 31000000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3-dimethylxanthine (theophylline) level)	5,261 European ancestry individuals	826 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2470893-T	0.33	1E-7		5.3	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2470893-T	0.33	5E-18		8.65	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption	17,479 European ancestry high consumption individuals, 31,049 European ancestry no or low consumption individuals	6,497 European ancestry high consumption individuals, 432 African American high consumption individuals, 6,972 European ancestry no or low consumption individuals, 3,413 African American no or low consumption individuals	15q24.1	CYP1A1, CYP1A2	rs2470893-T	0.31	5E-19		0.2	[0.16-0.24] unit increase	Affymetrix, Illumina [2376205] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	21876539	Amin N	2011-08-30	Mol Psychiatry	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	15q24.1	CYP1A1, CYP1A2	rs2470893-T	NR	2E-11		0.0675	[0.05-0.09] unit increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1157	chr15	75019448	75019449	rs2470893	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	15q24.1	EDC3, CYP1A1, CYP1A2, LMAN1L, CSK	rs2470893-T	0.31	5E-14		0.12	[0.08-0.16] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	5E-14		0.0209	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	4E-26		0.0293	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	1E-22		0.0268	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	1E-20		0.0255	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	5E-17		0.024	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	2E-32		0.0323	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	3E-13		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs2472297-T	NR	5E-34		0.0332	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	15q24.1	CYP1A1, SIN3A	rs2472297-C	0.732806	3E-102		0.05411	[0.049-0.059] unit decrease	Affymetrix [19400838] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	15q24.1	CYP1A1	rs2472297-C	0.731645	2E-351		0.10487	[0.1-0.11] unit decrease	Affymetrix [19400838] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	15q24.1	CYP1A1	rs2472297-C	0.731859	3E-140		0.06521	[0.06-0.07] unit decrease	Affymetrix [19400838] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	Clozapine concentration in schizophrenia	3,473 European ancestry individuals	NA	15q24.1	CYP1A1	rs2472297-T	NR	4E-10		0.073	[0.049-0.097] unit increase	Illumina [up to 6200000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	15q24.1	NR	rs2472297-T	0.206	3E-8		0.011993645	[0.0078-0.0162] unit increase	Affymetrix [NR] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	15q24.1	CYP1A1	rs2472297-?		3E-8		0.018	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1157	chr15	75027879	75027880	rs2472297	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.1	CYP1A1	rs2472297-T	0.272	2E-95		0.136	NR cups per day increase	NR [NR]	N
1157	chr15	75027879	75027880	rs2472297	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	15q24.1	CYP1A1, CYP1A2	rs2472297-T	0.265	2E-32	(EA)	0.027	[0.023-0.031] unit increase	NR [12082474] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.1	CYP1A1	rs2472297-T	0.2416	8E-9		0.0279	[0.018-0.037] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q24.1	CYP1A1	rs2472297-T	0.2487	2E-8		0.027944	[0.018-0.038] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q24.1	NR	rs2472297-T	0.2464	9E-6	(men)	0.0384	[0.022-0.055] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q24.1	NR	rs2472297-T	0.267	3E-9		0.016565675	[0.011-0.022] unit increase	Affymetrix [10549349] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q24.1	CYP1A1	rs2472297-T	0.229	2E-12		0.441	[0.32-0.56] unit increase	Affymetrix [NR] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.259	8E-20	(EA)	0.0039	[0.0031-0.0047] unit increase	Affymetrix [NR] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.257	2E-18		0.0039	[0.0031-0.0047] unit increase	Affymetrix [NR] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	15q24.1	CYP1A1	rs2472297-C	0.737388	7E-23	(EA)	0.0138093	[0.011-0.017] unit increase	Affymetrix [~ 8800000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	15q24.1	CYP1A1	rs2472297-C	0.737346	4E-15	(EA)	0.0106514	[0.008-0.0133] unit increase	Affymetrix [~ 8800000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q24.1	CYP1A1	rs2472297-T	0.2567	1E-34		0.0039	[0.0031-0.0047] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.259	8E-34		0.0039	[0.0031-0.0047] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.2614	1E-45		0.0247	[0.021-0.028] unit increase	Affymetrix [~ 7740000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	15q24.1	CYP1A1	rs2472297-C	0.7422	6E-7		0.0102	[0.0063-0.0141] unit increase	Affymetrix [~ 7740000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.2641	9E-157		0.0447	[0.041-0.048] unit increase	Affymetrix [~ 7740000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.2611	1E-97		0.0385	[0.035-0.042] unit increase	Affymetrix [~ 7740000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.2609	4E-74		0.0334	[0.03-0.037] unit increase	Affymetrix [~ 7740000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma clozapine levels in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	15q24.1	CYP1A2, CYP1A1	rs2472297-T	0.280027	4E-10			decrease	Illumina [~ 7500000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	15q24.1	CYP1A1	rs2472297-T	0.2663	3E-16		0.026	[0.02-0.032] unit increase	Affymetrix [19420026] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	15q24.1	NR	rs2472297-T	0.249	9E-11		0.00996419	[0.007-0.013] unit increase	NR [~ 9732723] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	15q24.1	NR	rs2472297-T	0.249	3E-10		0.010606047	[0.0073-0.0139] unit increase	NR [~ 10000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	15q24.1	CYP1A2, CYP1A1	rs2472297-T	0.267	5E-22		0.01812	[0.014-0.022] unit increase	Affymetrix [11709857] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2472297-T	0.27	9E-22		9.58	Z-score increase	Illumina [~ 31000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3-dimethylxanthine (theophylline) level)	5,261 European ancestry individuals	826 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2472297-T	0.27	1E-7		5.27	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,3,7-trimethylxanthine (caffeine) level)	9,054 European ancestry individuals	822 European ancestry individuals	15q24.1	ARID3B, CLK3, EDC3, CYP1A1	rs2472297-T	0.27	1E-20		9.34	Z-score decrease	Illumina [~ 31000000] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	15q24.1	CYP1A1, CYP1A2	rs2472297-T	0.24	2E-24		0.14	[0.12-0.16] unit increase	Affymetrix, Illumina [2373958] (imputed)	N
1157	chr15	75027879	75027880	rs2472297	21357676	Sulem P	2011-02-28	Hum Mol Genet	Sequence variants at CYP1A1-CYP1A2 and AHR associate with coffee consumption.	Coffee consumption	5,840 European ancestry individuals, 771 Sorbian (founder/genetic isolate) individuals	4,050 European ancestry individuals	15q24.1	CYP1A1, CYP1A2	rs2472297-T	0.265	5E-14		0.31	[0.17-0.44] cups per day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr15	75029997	75029998	rs76354137	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q24.1	NR	rs76354137-C	0.38	6E-7		0.92	[0.88-0.95]	NR [NR] (imputed)	N
1157	chr15	75029997	75029998	rs76354137	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q24.1	NR	rs76354137-C	0.38	5E-7		0.9	[0.87-0.94]	NR [NR] (imputed)	N
1157	chr15	75033399	75033400	rs2472299	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	15q24.1	intergenic	rs2472299-?	NR	3E-6				Illumina [574919]	N
1157	chr15	75044237	75044238	rs2472304	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	15q24.1	CYP1A2	rs2472304-A	0.65	3E-7		0.08	[0.06-0.10] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr15	75052494	75052495	rs12903896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q24.1		rs12903896-T	NR	6E-17		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1157	chr15	75052494	75052495	rs12903896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q24.1	CYP1A2	rs12903896-T	0.659097	2E-25		0.024348862	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1157	chr15	75052494	75052495	rs12903896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.1		rs12903896-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1157	chr15	75052494	75052495	rs12903896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q24.1	CYP1A2	rs12903896-T	0.6628	3E-10		0.02377885	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1157	chr15	75055818	75055819	rs79149102	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q24.1	CYP1A2, CSK	rs79149102-T	0.034385038	2E-7		1.1790844	[1.108721655-1.253912704]	Illumina [10439017] (imputed)	N
1157	chr15	75059545	75059546	rs58806801	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	15q24.1	CYP1A2, CSK	rs58806801-?	NR	2E-9		0.084	[0.057-0.111] unit decrease	Illumina [6108828] (imputed)	N
1157	chr15	75060412	75060413	rs79755028	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	15q24.1	CYP1A2, CSK	rs79755028-?	NR	5E-9		0.03918	[0.026-0.052] unit increase	Illumina [6108953] (imputed)	N
1157	chr15	75061915	75061916	rs11632414	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	15q24.1	CSK	rs11632414-A	0.3264	3E-15		0.066837415	[0.05-0.083] unit increase	Affymetrix [7288503] (imputed)	N
1157	chr15	75061928	75061929	rs12909307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	15q24.1		rs12909307-G	NR	3E-15		0.0668	[0.05-0.083] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1157	chr15	75061928	75061929	rs12909307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	15q24.1		rs12909307-G	NR	4E-8		0.0484	[0.031-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1157	chr15	75061928	75061929	rs12909307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q24.1		rs12909307-G	NR	1E-20		0.0604	[0.048-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1157	chr15	75061928	75061929	rs12909307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q24.1		rs12909307-G	NR	1E-28		0.0283	[0.023-0.033] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1157	chr15	75062396	75062397	rs11072508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q24.1		rs11072508-T	NR	8E-29		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1157	chr15	75062396	75062397	rs11072508	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	15q24.1	CSK	rs11072508-C	0.327501	9E-21		0.06041071	[0.048-0.073] unit increase	Affymetrix [7288503] (imputed)	N
1157	chr15	75062396	75062397	rs11072508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q24.1		rs11072508-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1157	chr15	75063572	75063573	rs1543927	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	15q24.1	CSK	rs1543927-T	0.26383	2E-8		0.052594505	[0.034-0.071] unit increase	Affymetrix [7288503] (imputed)	N
1157	chr15	75069281	75069282	rs936226	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	15q24.1	NR	rs936226-?	NR	9E-15		0.0544424	NR unit decrease	Affymetrix [464137]	N
1157	chr15	75069281	75069282	rs936226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q24.1	NA	rs936226-T	0.7294	2E-9		0.0114	[0.0077-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1157	chr15	75069281	75069282	rs936226	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	15q24.1	CYP1A1, ULK3	rs936226-T	0.722	3E-16		0.549	[0.42-0.68] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1157	chr15	75069281	75069282	rs936226	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	15q24.1	CYP1A1, ULK3	rs936226-T	0.722	1E-18		0.363	[0.28-0.44] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1157	chr15	75075649	75075650	rs12439944	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q24.1	CSK	rs12439944-T	0.04210115	6E-7		1.2104888	[1.123188371-1.304574605]	Illumina [10439017] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	15q24.1	CSK	rs1378942-C	0.39	2E-14		1.18		Illumina [4723365]	N
1157	chr15	75077366	75077367	rs1378942	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Hypertension	8,842 Korean ancestry individuals	NA	15q24.1	CSK	rs1378942-?		8E-6				NR [327872]	N
1157	chr15	75077366	75077367	rs1378942	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q24.1	CSK	rs1378942-A	0.6516	1E-17		0.324	[0.25-0.4] mmHg decrease	Affymetrix [NR] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	30525989	Siewert KM	2018-12-01	Circ Genom Precis Med	Bivariate Genome-Wide Association Scan Identifies 6 Novel Loci Associated With Lipid Levels and Coronary Artery Disease.	Coronary artery disease and total cholesterol levels (multivariate analysis)	122,733 coronary artery disease cases, 424,528 coronary artery disease controls, 188,577 individuals	NA	15q24.1	NR	rs1378942-A	0.62	2E-8				NR [NR]	N
1157	chr15	75077366	75077367	rs1378942	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q24.1	CYP1A1, CSK, ULK3	rs1378942-?	NR	1E-28				Affymetrix, Illumina [18800000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q24.1	CYP1A1, CSK, ULK3	rs1378942-?		8E-33				Affymetrix, Illumina [18800000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q24.1	CYP1A1, ULK3	rs1378942-A	0.652	2E-12	(EA, initial)	0.528	[0.38-0.68] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q24.1	CYP1A1, ULK3	rs1378942-A	0.652	6E-16	(EA, initial)	0.371	[0.28-0.46] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	15q24.1	CSK	rs1378942-?	NR	5E-6		1.11	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	15q24.1	CYP1A1-ULK3	rs1378942-A	0.5974	2E-15		0.0276	unit decrease	Illumina [242296]	N
1157	chr15	75077366	75077367	rs1378942	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	15q24.1	CSK, CYP1A1, ULK3	rs1378942-A	0.4112	5E-6		0.2756	[0.16-0.39] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q24.1	CYP1A1, ULK3	rs1378942-C	0.35	6E-23		0.613	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q24.1	CYP1A1, ULK3	rs1378942-C	0.35	3E-26		0.416	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	15q24.1	CSK	rs1378942-C	0.33	2E-15	(Mean Arterial Pressure)	0.386	[0.29-0.48] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1157	chr15	75077366	75077367	rs1378942	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	15q24.1	CYP1A1, CYP1A2, LMAN1L, CPLX3, CSK, ARID3B	rs1378942-C	0.36	1E-23		0.43	[0.35-0.51] mm Hg increase	Affymetrix, Illumina [2497993] (imputed)	N
1157	chr15	75079473	75079474	rs34933034	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q24.1	CSK	rs34933034-G	0.140265	6E-8		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1157	chr15	75080149	75080150	rs1378941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	15q24.1		rs1378941-A	NR	6E-13		0.0473	[0.034-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1157	chr15	75080684	75080685	rs8033381	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	15q24.1	NR	rs8033381-A	0.7297	2E-9		0.0114	[0.0077-0.0151] unit increase	NR [~ 27400000] (imputed)	N
1157	chr15	75081077	75081078	rs2168518	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	15q24.1	MIR4513	rs2168518-G	0.321597	3E-12		0.05984615	[0.043-0.077] unit increase	Affymetrix [7288503] (imputed)	N
1157	chr15	75082551	75082552	rs3784789	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q24.1	CSK	rs3784789-G	0.674355	2E-11		0.021671	[0.015-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1157	chr15	75083493	75083494	rs1378940	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	15q24.1	CSK	rs1378940-A	0.6133	1E-15				Affymetrix, Illumina [2331072] (imputed)	N
1157	chr15	75084280	75084281	rs1350193	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.1	CSK	rs1350193-C	0.68	3E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1157	chr15	75086385	75086386	rs72730503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q24.1		rs72730503-A	NR	3E-20		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1157	chr15	75088961	75088962	rs11635664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q24.1		rs11635664-T	NR	4E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1157	chr15	75091246	75091247	rs11553760	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	15q24.1	CSK	rs11553760-T	0.235	7E-10		1.111	[1.08-1.14]	Illumina [11270530] (imputed)	N
1157	chr15	75092383	75092384	rs2301249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs2301249-C	0.699875	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1157	chr15	75092383	75092384	rs2301249	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.1	CSK	rs2301249-T	0.32	5E-14	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1157	chr15	75092383	75092384	rs2301249	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.1	CSK	rs2301249-T	0.32	1E-15	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1157	chr15	75096442	75096443	rs1378938	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	15q24.1	CLK3,  CSK	rs1378938-?	0.278	8E-9		1.13		Illumina [139553]	N
1157	chr15	75097779	75097780	rs35206230	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	15q24.1	NR	rs35206230-T	0.67	1E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1157	chr15	75101529	75101530	rs34862454	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anti-inflammatory and antirheumatic products, non-steroids)	74,150 European ancestry cases, 90,370 European ancestry controls	NA	15q24.1	LMAN1L	rs34862454-C	0.329747	4E-8		0.040197317	[0.026-0.055] unit decrease	Affymetrix [7288503] (imputed)	N
1157	chr15	75102713	75102714	rs12591513	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q24.1		rs12591513-G	0.4	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
1157	chr15	75102850	75102851	rs12594062	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	15q24.1	LMAN1L	rs12594062-T	0.3595	5E-9		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1157	chr15	75103830	75103831	rs760711380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q24.1	NR	rs760711380-D	0.802402	7E-12		0.019012	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1158	chr15	75106718	75106719	rs112987086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	15q24.1		rs112987086-T	NR	2E-12		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1158	chr15	75106718	75106719	rs112987086	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q24.1	LMAN1L	rs112987086-G	0.279317	1E-11		0.0159566	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1158	chr15	75106718	75106719	rs112987086	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q24.1	LMAN1L	rs112987086-G	0.279353	3E-9		0.013972	[0.0094-0.0186] unit decrease	Affymetrix [NR] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q24.1		rs11636952-?	NR	5E-41				NR [~ 8900000] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q24.1	CSK	rs11636952-T	0.31390625	4E-10	(CSK, 3363_31_4)	0.16477944	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q24.1	LMAN1L	rs11636952-T	0.32	8E-28	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.1	LMAN1L	rs11636952-T	0.32	4E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q24.1	LMAN1L	rs11636952-T	0.32	4E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75114321	75114322	rs11636952	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.1	LMAN1L	rs11636952-T	0.32	3E-15	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75116166	75116167	rs12917376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q24.1	LMAN1L, RP11-414J4.2	rs12917376-T	0.595157	6E-14		0.017342422	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1158	chr15	75116166	75116167	rs12917376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q24.1	LMAN1L, RP11-414J4.2	rs12917376-T	0.595143	6E-24		0.023527049	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75116166	75116167	rs12917376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs12917376-T	0.486114	3E-27				Affymetrix, Illumina [24332387] (imputed)	N
1158	chr15	75116166	75116167	rs12917376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q24.1	NR	rs12917376-T	0.584787	7E-31		0.022113	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1158	chr15	75116166	75116167	rs12917376	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	15q24.1	LMAN1L	rs12917376-?	NR	4E-8		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [5701386] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	15q24.1		rs6495122-C	NR	7E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q24.1	CYP1A1, CSK, ULK3	rs6495122-?	NR	4E-23				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q24.1	CYP1A1, CSK, ULK3	rs6495122-?		5E-30				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q24.1	CPLX3, ULK3	rs6495122-A		1E-16		0.326	unit increase	Affymetrix [at least 2696785] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q24.1	CPLX3, ULK3	rs6495122-A		5E-6		0.171	unit increase	Affymetrix [at least 2696785] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q24.1	CPLX3, ULK3	rs6495122-A		4E-6	(EA)	0.188	unit increase	Affymetrix [at least 2696785] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q24.1	CPLX3, ULK3	rs6495122-A		3E-29		0.27	unit increase	Affymetrix [at least 2696785] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	15q24.1	LMAN1L, ULK3, MPI, CSK, CYP1A2	rs6495122-C	0.477557660117678	2E-15		0.36816713	[0.28-0.46] unit decrease	Illumina [247039]	N
1158	chr15	75125644	75125645	rs6495122	21876539	Amin N	2011-08-30	Mol Psychiatry	Genome-wide association analysis of coffee drinking suggests association with CYP1A1/CYP1A2 and NRCAM.	Coffee consumption	18,176 European ancestry individuals	7,929 European ancestry individuals	15q24.1	CPLX3, ULK3	rs6495122-A	NR	7E-9		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	15q24.1	CYP1A2, LMAN1L, SCAMP2, CPLX3, MP1, CSK, ULK3, COX5A, C14orf17	rs6495122-A	0.43	6E-7		0.07	[0.05-0.09] mg/day decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1158	chr15	75125644	75125645	rs6495122	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	15q24.1	CSK, ULK3	rs6495122-A	0.42	2E-10		0.4	[0.28-0.52] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
1158	chr15	75129583	75129584	rs55973697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.1	NR	rs55973697-C	NR	2E-9		0.0548	[0.037-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1158	chr15	75129583	75129584	rs55973697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.1	NR	rs55973697-C	NR	1E-10		0.0589	[0.041-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1158	chr15	75129583	75129584	rs55973697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs55973697-C	NR	7E-20		0.083	[0.065-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1158	chr15	75129583	75129584	rs55973697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.1	NR	rs55973697-C	NR	2E-9		0.0549	[0.037-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1158	chr15	75129583	75129584	rs55973697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.1	NR	rs55973697-C	NR	7E-21		0.0853	[0.067-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
1158	chr15	75130572	75130573	rs2290572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q24.1	ULK3	rs2290572-G	0.629059	1E-13		0.01704164	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75132318	75132319	rs936229	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	15q24.1	ULK3	rs936229-?	NR	3E-8		0.1109	unit increase	Illumina [up to 143074]	N
1158	chr15	75132318	75132319	rs936229	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	15q24.1	ULK3	rs936229-G	0.595	4E-6	(Dominant model)	1.685	[1.302-2.18]	Illumina [733202]	N
1158	chr15	75132489	75132490	rs12908814	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	15q24.1	ULK3	rs12908814-G	0.6294	2E-10		0.02336464	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1158	chr15	75136260	75136261	rs6938	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q24.1	NR	rs6938-G	0.6551	9E-8	(EA)	0.0364	[0.023-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
1158	chr15	75139425	75139426	rs4480762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q24.1	SCAMP2	rs4480762-G	0.580745	2E-28		0.024937721	[0.021-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75139695	75139696	rs12902690	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q24.1	SCAMP2	rs12902690-A	0.34	2E-36	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75140853	75140854	rs3765066	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q24.1	CPLX3, ULK3	rs3765066-G		1E-13		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1158	chr15	75147331	75147332	rs1869959	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer (estrogen-receptor positive)	4,299 African ancestry cases, 10,193 African ancestry controls, 69,501 European ancestry cases, 105,974 European ancestry controls	NA	15q24.1		rs1869959-A	0.3	6E-8		0.96	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1158	chr15	75147331	75147332	rs1869959	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	9,241 African ancestry cases, 10,193 African ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	NA	15q24.1		rs1869959-A	0.3	5E-8		0.96	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1158	chr15	75147331	75147332	rs1869959	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	122,977 European ancestry cases, 105,974 European ancestry controls	NA	15q24.1		rs1869959-A	0.3	4E-7		0.97	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1158	chr15	75147331	75147332	rs1869959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.1	NR	rs1869959-C	0.710316	1E-19				Affymetrix, Illumina [23467995] (imputed)	N
1158	chr15	75154778	75154779	rs6495124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q24.1		rs6495124-T	NR	5E-16		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1158	chr15	75154778	75154779	rs6495124	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q24.1	SCAMP2	rs6495124-C	NR	3E-7		1.05241	NR	Affymetrix, Illumina [8278136] (imputed)	N
1158	chr15	75154856	75154857	rs62006636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.1		rs62006636-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1158	chr15	75158617	75158618	rs56671860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	15q24.1		rs56671860-T	0.061371	2E-8		0.0425106	[0.028-0.057] unit increase	Illumina [13476299] (imputed)	N
1158	chr15	75170081	75170082	rs12903205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q24.1		rs12903205-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1158	chr15	75180891	75180892	rs9673065	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q24.1	NR	rs9673065-T	0.426014	2E-11		0.0130176	[0.0092-0.0168] unit decrease	Affymetrix [15000001]	N
1158	chr15	75186376	75186380	rs144127155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q24.1	MPI	rs144127155-G	0.56592	1E-11		0.015225547	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75193003	75193004	rs1127796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs1127796-T	0.450632	4E-12				Affymetrix, Illumina [22063850] (imputed)	N
1158	chr15	75193003	75193004	rs1127796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q24.2	NR	rs1127796-T	0.431439	2E-13		0.014007	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1158	chr15	75194489	75194490	rs6495127	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	15q24.2	FAM219B	rs6495127-?	NR	6E-10		0.0419321	NR unit decrease	Affymetrix [464137]	N
1158	chr15	75194489	75194490	rs6495127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.2		rs6495127-T	0.7011	5E-9	(conditional-joint)	0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1158	chr15	75195513	75195514	rs6495128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q24.2	FAM219B	rs6495128-T	0.206468	8E-13		0.01940074	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75195513	75195514	rs6495128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs6495128-T	0.30689	2E-21				Affymetrix, Illumina [20825802] (imputed)	N
1158	chr15	75195513	75195514	rs6495128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q24.2	NR	rs6495128-T	0.20846	3E-20		0.021814	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1158	chr15	75195513	75195514	rs6495128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q24.2		rs6495128-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1158	chr15	75201734	75201736	rs371673613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q24.2	NR	rs371673613-D	0.74871	7E-24		0.02365	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1158	chr15	75201736	75201737	rs67631345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q24.2		rs67631345-C	NR	2E-15		0.0214	[0.016-0.027] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1158	chr15	75201736	75201737	rs67631345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q24.2	FAM219B	rs67631345-CT	0.251163	5E-18		0.022308182	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr15	75201736	75201737	rs67631345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q24.2	FAM219B	rs67631345-C	0.7471	4E-10		0.02598566	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1158	chr15	75206224	75206225	rs7495033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q24.2	Intergenic	rs7495033-A	0.6695	9E-11	(MTAG)	0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr15	75206224	75206225	rs7495033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.2		rs7495033-A	0.689	6E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1158	chr15	75206224	75206225	rs7495033	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q24.2	Intergenic	rs7495033-A	0.689	1E-11	(MTAG)	0.0097	[0.007-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1158	chr15	75208548	75208549	rs7497026	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.2	COX5A	rs7497026-T	0.45	3E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	5E-15	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	1E-12				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	3E-15				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?		1E-16	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	8E-21				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	1E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	4E-24	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75211142	75211142	rs10628234	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	CYP1A1-2, ULK3, SCAMP2, MPI	rs10628234-?	NR	2E-24				Affymetrix, Illumina [18800000] (imputed)	N
1158	chr15	75212356	75212357	rs1133322	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.2	COX5A	rs1133322-A	0.55	4E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75222224	75222225	rs12148513	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q24.2	NR	rs12148513-T	0.3792	2E-8		0.001276	[0.00081-0.00174] unit increase	Affymetrix [NR] (imputed)	N
1158	chr15	75224809	75224810	rs11072516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q24.2	COX5A	rs11072516-A	0.455499	4E-18		0.019385448	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1158	chr15	75224809	75224810	rs11072516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs11072516-A	0.430279	2E-14				Affymetrix, Illumina [23114412] (imputed)	N
1158	chr15	75224809	75224810	rs11072516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q24.2	NR	rs11072516-A	0.448073	6E-15		0.015293	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1158	chr15	75227968	75227969	rs4886640	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q24.2	COX5A	rs4886640-A	0.51	6E-16	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75229099	75229100	rs12899430	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q24.2	COX5A	rs12899430-T	0.47	1E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1158	chr15	75231234	75231236	rs10570797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q24.2		rs10570797-C	NR	2E-13		0.0187	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1158	chr15	75234609	75234610	rs11072518	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q24.2	COX5A	rs11072518-T	0.36	4E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1159	chr15	75240029	75240030	rs8037798	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q24.2	COX5A, RPP25	rs8037798-G	0.233044	4E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1159	chr15	75247155	75247156	rs34063670	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q24.2	RPP25	rs34063670-C	0.5	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	2E-18	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	2E-13				Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	2E-15				Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?		4E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	7E-25	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	3E-16				Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	3E-27	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75260895	75260896	rs12050494	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	15q24.2	MPI, COX5A, SCAMP5	rs12050494-?	NR	1E-18				Affymetrix, Illumina [18800000] (imputed)	N
1159	chr15	75265190	75265191	rs12050759	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q24.2	RPP25	rs12050759-A	0.36	3E-19	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1159	chr15	75289721	75289722	rs3812945	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q24.2	SCAMP5	rs3812945-T	0.573	8E-10		0.0138	[0.0093-0.0183] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1159	chr15	75292732	75292732	rs35154717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q24.2	SCAMP5	rs35154717-AT	0.180373	6E-9		0.017857192	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr15	75292732	75292732	rs35154717	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	15q24.2	SCAMP5	rs35154717-AT	0.1817	2E-10		0.02968001	[0.021-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1159	chr15	75297600	75297601	rs9672995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs9672995-C	0.244907	7E-11				Affymetrix, Illumina [24649327] (imputed)	N
1159	chr15	75297600	75297601	rs9672995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q24.2	NR	rs9672995-C	0.193313	1E-41		0.031187	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1159	chr15	75303554	75303554	rs35875065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q24.2	SCAMP5	rs35875065-GT	0.189668	8E-21		0.0294545	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr15	75311035	75311036	rs2289583	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	15q24.2	CSK	rs2289583-?	0.291	9E-9	(EA)	1.2	[NR]	NR [6344733] (imputed)	N
1159	chr15	75311035	75311036	rs2289583	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	15q24.2	CSK	rs2289583-A		6E-10		1.18	[NR]	Illumina [> 644674] (imputed)	N
1159	chr15	75311035	75311036	rs2289583	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	15q24.2	CSK, SCAMP5, PPCDC	rs2289583-A		6E-15		1.19	[1.14-1.24]	Illumina [644674]	N
1159	chr15	75318481	75318482	rs3850093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs3850093-A	0.263069	5E-45				Affymetrix, Illumina [24246363] (imputed)	N
1159	chr15	75320432	75320433	rs8042558	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.2	PPCDC	rs8042558-T	0.235	1E-10		0.044	NR cups per day decrease	NR [NR]	N
1159	chr15	75325971	75325986	rs61093639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q24.2		rs61093639-A	NR	3E-19		0.0208	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1159	chr15	75328594	75328595	rs4886649	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	15q24.2	PPCDC	rs4886649-?	NR	2E-8			[NR]	NR [NR] (imputed)	N
1159	chr15	75329090	75329091	rs12917120	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	15q24.2	PPCDC	rs12917120-C	0.665	2E-17		0.053	NR cups per day increase	NR [NR]	N
1159	chr15	75331442	75331443	rs147451859	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	15q24.2	PPCDC	rs147451859-G	0.07	6E-9		1.74	[NR]	Illumina [5430816] (imputed)	N
1159	chr15	75332999	75333000	rs60425110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q24.2		rs60425110-A	NR	2E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1159	chr15	75332999	75333000	rs60425110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q24.2		rs60425110-A	NR	4E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1159	chr15	75333493	75333494	rs12050628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q24.2	PPCDC	rs12050628-A	0.760066	4E-11		0.017273467	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr15	75334183	75334184	rs2120019	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	15q24.2	SCAMP5, PPCDC	rs2120019-C	NR	2E-18		0.287	[0.22-0.35] unit decrease	Illumina [> 2500000] (imputed)	N
1159	chr15	75352657	75352658	rs56936958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q24.2		rs56936958-A	NR	2E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1159	chr15	75354620	75354621	rs35577967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q24.2	PPCDC	rs35577967-A	0.184914	1E-15		0.0219463	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1159	chr15	75354970	75354971	rs1867146	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q24.2		rs1867146-C	0.818	9E-17		0.12	[0.09-0.15] % increase	Affymetrix [NR] (imputed)	N
1159	chr15	75354971	75354972	rs12148425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q24.2	PPCDC	rs12148425-C	0.294472	2E-9		0.014547563	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1159	chr15	75358387	75358388	rs12910644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q24.2	NR	rs12910644-G	0.189061	3E-13		0.017236	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1159	chr15	75361538	75361539	rs67544533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q24.2		rs67544533-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1159	chr15	75361649	75361650	rs67538199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q24.2	PPCDC	rs67538199-C	0.161424	5E-12		0.020876974	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1159	chr15	75361649	75361650	rs67538199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q24.2	PPCDC	rs67538199-C	0.161441	1E-12		0.021640576	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75366485	75366486	rs12708514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q24.2	PPCDC	rs12708514-G	0.208795	4E-17		0.023380991	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75369617	75369618	rs7173833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q24.2	NR	rs7173833-A	0.211819	6E-21		0.021155	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1160	chr15	75370011	75370012	rs34180494	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q24.2	PPCDC	rs34180494-A	0.726235	6E-9		0.0127805	[0.0085-0.0171] unit increase	Affymetrix [NR] (imputed)	N
1160	chr15	75382541	75382542	rs12148488	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	15q24.2	intergenic	rs12148488-G	0.497095210966645	3E-7		0.23130007	[0.14-0.32] unit decrease	Illumina [247039]	N
1160	chr15	75382541	75382542	rs12148488	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	15q24.2	SCAMP5, PPCDC	rs12148488-T	0.50	6E-7		0.07	[0.05-0.09] mg/day decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1160	chr15	75391046	75391047	rs71401677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q24.2	PPCDC	rs71401677-G	0.112831	5E-13		0.026211604	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75400778	75400779	rs4381563	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	15q24.2	NR	rs4381563-T	0.6665	3E-9		1.0380982	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1160	chr15	75403133	75403134	rs4886656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	15q24.2		rs4886656-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1160	chr15	75414759	75414760	rs4886659	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q24.2	PPCDC	rs4886659-A	0.274894	1E-12		0.0147231	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1160	chr15	75419109	75419110	rs11072525	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q24.2		rs11072525-G	0.31	6E-16		8.1	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr15	75419109	75419110	rs11072525	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q24.2		rs11072525-G	0.31	3E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr15	75419109	75419110	rs11072525	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q24.2	NR	rs11072525-G	0.2748	6E-12				NR [9056863] (imputed)	N
1160	chr15	75421473	75421474	rs10775208	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q24.2	intergenic	rs10775208-T		1E-10		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1160	chr15	75424334	75424335	rs7172205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q24.2		rs7172205-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1160	chr15	75424592	75424593	rs7172677	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	15q24.2	CSK	rs7172677-?	NR	3E-8		1.207	[NR]	Illumina [NR]	N
1160	chr15	75431784	75431785	rs7177045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs7177045-G	0.100783	1E-14				Affymetrix, Illumina [21126107] (imputed)	N
1160	chr15	75431784	75431785	rs7177045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q24.2	NR	rs7177045-G	0.120558	2E-16		0.025393	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1160	chr15	75432516	75432517	rs11072526	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q24.2		rs11072526-?	NR	6E-11		0.014357	[0.0097-0.0191] unit decrease	Affymetrix [20259828] (imputed)	N
1160	chr15	75443633	75443633	rs560547656	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q24.2		rs560547656-C	0.47	3E-11				NR [NR] (imputed)	N
1160	chr15	75443633	75443633	rs560547656	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q24.2		rs560547656-C	0.47	3E-10		0.009	% increase	NR [NR] (imputed)	N
1160	chr15	75443652	75443652	rs34799303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q24.2		rs34799303-CAAAAAA	NR	3E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1160	chr15	75446834	75446835	rs58201389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q24.2	NR	rs58201389-A	NR	4E-13		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1160	chr15	75448180	75448181	rs4886669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q24.2		rs4886669-T	0.67339	7E-19		0.020985547	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75448180	75448181	rs4886669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q24.2		rs4886669-T	0.67342	4E-19		0.021124087	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75449673	75449674	rs4886670	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	15q24.2	RPL36AP45	rs4886670-A	0.229	7E-6	(Allelic model)	1.835	[1.412-2.383]	Illumina [733202]	N
1160	chr15	75449673	75449674	rs4886670	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	15q24.2	RPL36AP45	rs4886670-A	0.227	1E-6	(Allelic model)	1.605	[1.330-1.937]	Illumina [733202]	N
1160	chr15	75449742	75449743	rs4886671	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	15q24.2	NR	rs4886671-C		6E-6		0.0866	[0.049-0.124] SD units decrease	NR [10700000] (imputed)	N
1160	chr15	75454878	75454879	rs12708515	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q24.2	NR	rs12708515-G	0.364201	2E-14		0.0213711	[0.016-0.027] unit increase	Affymetrix [16580851] (imputed)	N
1160	chr15	75463143	75463144	rs2201003	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q24.2	NR	rs2201003-A	0.363874	7E-10		0.00800069	[0.0054-0.0106] unit increase	Affymetrix [16578495] (imputed)	N
1160	chr15	75473226	75473227	rs11638477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q24.2	NR	rs11638477-T	0.4837	3E-14		0.017091578	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75473226	75473227	rs11638477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q24.2		rs11638477-T	0.483662	7E-9		0.012949432	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr15	75478425	75478426	rs74470095	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	15q24.2	NR	rs74470095-G	0.98	1E-8		2.1	[1.37-2.83] unit decrease	Affymetrix [39302896] (imputed)	N
1160	chr15	75483751	75483752	rs11636245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q24.2	C15orf39, RPL36AP45	rs11636245-G	0.293756	3E-12		0.017981876	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr15	75498743	75498744	rs1873379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q24.2	C15orf39	rs1873379-C	0.286096	2E-18		0.022351941	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1161	chr15	75515553	75515554	rs62027346	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q24.2	C15orf39, GOLGA6C	rs62027346-A	0.9117139910000001	6E-6		1.1691946	[1.09-1.25]	Illumina [10439017] (imputed)	N
1161	chr15	75595356	75595357	rs35917376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	15q24.2		rs35917376-A	0.578135	1E-19		0.026767	[0.021-0.033] unit decrease	Illumina [13479924] (imputed)	N
1161	chr15	75595356	75595357	rs35917376	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	15q24.2	NR	rs35917376-T	0.25	4E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
1161	chr15	75595356	75595357	rs35917376	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q24.2	DNM1P34	rs35917376-A	0.663	4E-9		0.413	[0.28-0.55] unit increase	Affymetrix [NR] (imputed)	N
1161	chr15	75609029	75609030	rs8031650	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	15q24.2	COMMD4	rs8031650-A	NR	4E-16		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1161	chr15	75609029	75609030	rs8031650	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	15q24.2	COMMD4	rs8031650-C	NR	2E-7		1.0409149	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
1161	chr15	75609487	75609488	rs11636600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q24.2		rs11636600-A	NR	1E-8		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1161	chr15	75609487	75609488	rs11636600	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	15q24.2	ANP32BP1	rs11636600-G	NR	1E-10		0.0122287	[0.0085-0.0159] unit increase	Affymetrix [10061374] (imputed)	N
1161	chr15	75610683	75610684	rs55653892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	15q24.2	NR	rs55653892-C	NR	4E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr15	75610683	75610684	rs55653892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs55653892-C	NR	6E-18		0.0234	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr15	75610683	75610684	rs55653892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs55653892-C	NR	1E-18		0.0238	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1161	chr15	75610683	75610684	rs55653892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs55653892-C	NR	2E-13		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr15	75610683	75610684	rs55653892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs55653892-C	NR	4E-20		0.0249	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1161	chr15	75619200	75619201	rs73436803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.2	COMMD4	rs73436803-T	0.2441	3E-12		0.0273	[0.02-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1161	chr15	75619200	75619201	rs73436803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.2	COMMD4	rs73436803-T	0.0986	3E-7	(East Asian)	0.0577	[0.036-0.08] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1161	chr15	75619200	75619201	rs73436803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q24.2	COMMD4	rs73436803-T	0.2678	2E-7		0.022552	[0.014-0.031] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1161	chr15	75619200	75619201	rs73436803	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q24.2	NR	rs73436803-T	0.2295	3E-10	(men)	0.0415	[0.029-0.054] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1161	chr15	75619200	75619201	rs73436803	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	15q24.2	GOLGA6D, COMMD4	rs73436803-T	0.099	1E-8	(Japanese)	0.043	[0.027-0.059] unit decrease	Illumina [5864938] (imputed)	N
1162	chr15	75628840	75628841	rs3809547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q24.2	NR	rs3809547-C	0.246448	5E-23		0.022213	[0.018-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1162	chr15	75630159	75630160	rs6495168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q24.2		rs6495168-C	0.642598036	4E-11		0.06580597	[0.046-0.085] unit increase	Illumina [13429769] (imputed)	N
1162	chr15	75630159	75630160	rs6495168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q24.2		rs6495168-C	NR	6E-13		0.062	[0.045-0.079] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1162	chr15	75630159	75630160	rs6495168	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q24.2		rs6495168-C	0.672273071	3E-11		1.0666659	[1.046505427-1.087214806]	Illumina [8919992] (imputed)	N
1162	chr15	75664569	75664570	rs4886696	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q24.2	SIN3A	rs4886696-A	0.333	2E-23		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1162	chr15	75692302	75692303	rs4886699	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q24.2	SIN3A	rs4886699-A	0.752	5E-19		0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1162	chr15	75698200	75698201	rs112994348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs112994348-T	NR	3E-9		0.0312	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr15	75698200	75698201	rs112994348	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs112994348-T	NR	2E-9		0.0314	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1162	chr15	75699522	75699523	rs8024276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q24.2	SIN3A	rs8024276-A	0.123963	9E-16		0.027603365	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1162	chr15	75718668	75718669	rs8028182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q24.2		rs8028182-T	NR	8E-17		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1162	chr15	75718668	75718669	rs8028182	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q24.2	SIN3A	rs8028182-T	0.19484	7E-13		0.020669391	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1162	chr15	75718668	75718669	rs8028182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs8028182-T	0.219275	2E-18				Affymetrix, Illumina [24588908] (imputed)	N
1162	chr15	75718668	75718669	rs8028182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs8028182-G	0.793673	3E-21				Affymetrix, Illumina [17210439] (imputed)	N
1162	chr15	75718668	75718669	rs8028182	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q24.2	SIN3A	rs8028182-?	0.18	3E-6	(Recessive)	1.36	[1.19-1.54]	Affymetrix [319222]	N
1162	chr15	75728474	75728474	rs60381548	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	9,241 African ancestry cases, 10,193 African ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	NA	15q24.2		rs60381548-CA	0.27	7E-9		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1162	chr15	75728474	75728474	rs60381548	34234117	Adedokun B	2021-07-07	Nat Commun	Cross-ancestry GWAS meta-analysis identifies six breast cancer loci in African and European ancestry women.	Breast cancer	122,977 European ancestry cases, 105,974 European ancestry controls	NA	15q24.2		rs60381548-CA	0.25	4E-7		0.96	[0.95-0.98]	Affymetrix, Illumina [NR] (imputed)	N
1162	chr15	75742094	75742095	rs8038760	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q24.2	SIN3A	rs8038760-A	0.608	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1162	chr15	75753809	75753810	rs117174465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs117174465-G	NR	9E-13		0.0632	[0.046-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1162	chr15	75753809	75753810	rs117174465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs117174465-G	NR	7E-20		0.0804	[0.063-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1162	chr15	75753809	75753810	rs117174465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs117174465-G	NR	1E-20		0.0821	[0.065-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1162	chr15	75755466	75755467	rs4886707	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	15q24.2	NR	rs4886707-T	0.267786299920655	1E-7				NR [9276018] (imputed)	N
1162	chr15	75755466	75755467	rs4886707	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q24.2	SIN3A, PTPN9	rs4886707-T	0.42	8E-8		0.06	[0.04-0.08] cm increase	Illumina [420885]	N
1163	chr15	75802153	75802154	rs4381565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.2	PTPN9	rs4381565-G	NR	1E-10		0.0229394	[0.016-0.03] unit increase	Affymetrix [323123] (imputed)	N
1163	chr15	75807691	75807692	rs11639183	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q24.2	PTPN9	rs11639183-?	NR	4E-38		0.037074823	[0.031-0.043] unit increase	Illumina [27896057] (imputed)	N
1163	chr15	75808739	75808740	rs8027365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q24.2		rs8027365-C	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1163	chr15	75808739	75808740	rs8027365	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q24.2	NR	rs8027365-C	0.2707	1E-7	(EA)	0.038	[0.024-0.052] unit decrease	Illumina [~ 11800000] (imputed)	N
1163	chr15	75810807	75810807	rs111475133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q24.2	NR	rs111475133-T	0.803543	1E-11		0.0176792	[0.013-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1163	chr15	75810807	75810807	rs111475133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q24.2	NR	rs111475133-T	0.803253	3E-15		0.0261172	[0.02-0.033] unit increase	Affymetrix [16585745] (imputed)	N
1163	chr15	75814387	75814388	rs6495182	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q24.2	NR	rs6495182-C	0.7484	3E-14		0.0406	[0.03-0.051] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1163	chr15	75814387	75814388	rs6495182	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q24.2	NR	rs6495182-C	0.6845	2E-22		0.0405	[0.032-0.049] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1163	chr15	75816648	75816649	rs12904319	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q24.2	PTPN9	rs12904319-C	0.066	2E-6	(AA)	0.073	[0.044-0.102] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1163	chr15	75816648	75816649	rs12904319	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q24.2	PTPN9	rs12904319-C		3E-9				Affymetrix, Illumina [17972582] (imputed)	N
1163	chr15	75822229	75822230	rs8024244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.2		rs8024244-?	NR	1E-51				NR [~ 8900000] (imputed)	N
1163	chr15	75866149	75866150	rs7184046	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q24.2	PTPN9	rs7184046-C	0.42	2E-10		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1163	chr15	75870550	75870551	rs75393192	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	15q24.2	NR	rs75393192-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1163	chr15	75876597	75876605	rs151128192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q24.2		rs151128192-T	NR	3E-16		0.0148	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1163	chr15	75876597	75876605	rs151128192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q24.2		rs151128192-T	0.428051	2E-33		0.0247712	[0.021-0.029] unit increase	Illumina [13479295] (imputed)	N
1163	chr15	75885429	75885430	rs7170787	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q24.2	SNUPN	rs7170787-A	0.2516	3E-18		0.0191	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1164	chr15	75899009	75899010	rs75772464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs75772464-C	NR	4E-9		0.0308	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1164	chr15	75899009	75899010	rs75772464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs75772464-C	NR	2E-10		0.0335	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	75899009	75899010	rs75772464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs75772464-C	NR	2E-9		0.0317	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	75915136	75915137	rs4886718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.2	SNUPN	rs4886718-A	NR	3E-8		0.0170136	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1164	chr15	75925591	75925592	rs11856606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.2	CTD-2026K11.2	rs11856606-A	NR	2E-9		0.0254971	[0.017-0.034] unit increase	Affymetrix [321016] (imputed)	N
1164	chr15	75925591	75925592	rs11856606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.2	CTD-2026K11.2	rs11856606-A	NR	1E-8		0.0264201	[0.017-0.036] unit increase	Affymetrix [323123] (imputed)	N
1164	chr15	75928191	75928192	rs7166281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	15q24.2		rs7166281-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1164	chr15	75928479	75928479	rs544750399	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q24.2	NR	rs544750399-TC	0.20589599999999997	4E-11		0.00692827	[0.0048-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1164	chr15	75928479	75928479	rs544750399	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q24.2	NR	rs544750399-TC	0.20589599999999997	2E-10		0.00768799	[0.0053-0.01] unit increase	Affymetrix [16582965] (imputed)	N
1164	chr15	75929990	75929991	rs79604958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs79604958-C	NR	7E-11		0.0341	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	75929990	75929991	rs79604958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs79604958-C	NR	4E-9		0.0307	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1164	chr15	75929990	75929991	rs79604958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs79604958-C	NR	6E-10		0.0324	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	75929990	75929991	rs79604958	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	15q24.2	Intergenic	rs79604958-C	0.07	4E-6		0.47	[0.27-0.68] unit increase	NR [~ 38000000] (imputed)	N
1164	chr15	75930300	75930307	rs67079557	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q24.2	NR	rs67079557-A	0.2423	1E-6	(EA)	0.0362	[0.022-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
1164	chr15	75932128	75932129	rs13737	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q24.2	PTPN9	rs13737-G	0.7586	6E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1164	chr15	75938253	75938254	rs59366264	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs59366264-G	NR	5E-9		0.0171	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	75938253	75938254	rs59366264	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs59366264-G	NR	8E-10		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1164	chr15	75963213	75963214	rs12898361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q24.2		rs12898361-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1164	chr15	75973287	75973288	rs11636280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q24.2	CSPG4	rs11636280-G	NR	2E-8		0.0165858	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
1164	chr15	75979781	75979782	rs8030131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.2		rs8030131-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1164	chr15	75989615	75989616	rs138591431	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	15q24.2	CSPG4	rs138591431-?	NR	9E-6		3.92	[2.22-6.93]	Illumina [654642] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs11637353-T	NR	2E-9		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs11637353-T	NR	2E-15		0.0208	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs11637353-T	NR	3E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs11637353-T	NR	2E-15		0.0208	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs11637353-T	NR	7E-13		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr15	76014428	76014429	rs11637353	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q24.2	CSPG4, ODF3L1	rs11637353-G	0.7104	1E-8		0.0832	[0.053-0.114] unit increase	Affymetrix [~ 11900000] (imputed)	N
1165	chr15	76021781	76021782	rs11630851	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex, smoking status  and plaque)	3,906 Finnish ancestry individuals	NA	15q24.2		rs11630851-T	0.067	9E-7		0.3	[0.18-0.42] number of affected teeth increase	Illumina [NR] (imputed)	N
1165	chr15	76028368	76028369	rs17424999	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q24.2	DNM1P35	rs17424999-A	0.7202	6E-9		0.086	[0.055-0.117] unit increase	Affymetrix [~ 11900000] (imputed)	N
1165	chr15	76033288	76033289	rs148352615	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q24.2	NR	rs148352615-G	0.01045	1E-8	(SDS)	0.09143	NR unit increase	Illumina [1671387] (imputed)	N
1165	chr15	76033288	76033289	rs148352615	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	15q24.2	RP11-24M17.4	rs148352615-?	NR	7E-6		3.94	[2.23-6.97]	Illumina [654642] (imputed)	N
1165	chr15	76049153	76049154	rs187112398	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	15q24.2	DNM1P35, MIR4313	rs187112398-T	7.89E-4	1E-8				Affymetrix [28000000] (imputed)	N
1165	chr15	76118133	76118134	rs79972752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs79972752-T	NR	2E-12		0.0305	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr15	76118133	76118134	rs79972752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs79972752-T	NR	2E-21		0.0412	[0.033-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr15	76118133	76118134	rs79972752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs79972752-T	NR	4E-19		0.0386	[0.03-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1165	chr15	76118133	76118134	rs79972752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs79972752-T	NR	2E-19		0.0391	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr15	76118133	76118134	rs79972752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs79972752-T	NR	4E-20		0.0398	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr15	76123208	76123209	rs28718978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q24.2		rs28718978-G	0.199622	1E-10		0.019080104	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr15	76123208	76123209	rs28718978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q24.2		rs28718978-G	0.19963	5E-12		0.020418162	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr15	76136193	76136194	rs2047866	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q24.2	UBE2Q2	rs2047866-C		4E-35		0.027	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1165	chr15	76136193	76136194	rs2047866	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	15q24.2	UBE2Q2	rs2047866-T	0.459	6E-10		0.575	[0.39-0.76] unit decrease	Affymetrix [NR] (imputed)	N
1165	chr15	76144193	76144194	rs60846313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q24.2	UBE2Q2	rs60846313-G	0.024958	2E-19		0.0648537	[0.051-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	15q24.2	UBE2Q2	rs1394125-A	0.36	1E-9		1.13	[1.09-1.18]	Affymetrix [710030]	N
1166	chr15	76158982	76158983	rs1394125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs1394125-A	NR	8E-37		0.0314	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs1394125-A	NR	6E-28		0.0272	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs1394125-A	NR	7E-54		0.0382	[0.033-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs1394125-A	NR	8E-38		0.0319	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs1394125-A	NR	5E-55		0.0387	[0.034-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	15q24.2	UBE2Q2	rs1394125-A	NR	6E-13		0.0072	[0.0052-0.0092] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	15q24.2	UBE2Q2	rs1394125-A	0.35	5E-14	(EA)	0.0073	[0.0053-0.0093] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q24.2	UBE2Q2, NRG4	rs1394125-A	0.34	3E-13		0.043	[0.031-0.055] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1166	chr15	76158982	76158983	rs1394125	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	15q24.2	UBE2Q2, FBX022	rs1394125-A	0.35	3E-17	(eGFRcrea)	0.01	[0.007-0.011] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1166	chr15	76160950	76160951	rs1976748	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	15q24.2	UBE2Q2	rs1976748-A		3E-12		0.036	[0.026-0.046] mg/dl decrease	NR [NR] (imputed)	N
1166	chr15	76171889	76171890	rs76806081	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	15q24.2	NR	rs76806081-?	NR	5E-6		12.006	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1166	chr15	76183826	76183826	rs150289149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q24.2		rs150289149-GT	NR	2E-41		0.0257	[0.022-0.029] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1166	chr15	76183826	76183826	rs150289149	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q24.2	UBE2Q2	rs150289149-G	0.5066	1E-31	(EA)	0.004	[0.0034-0.0046] unit decrease	Affymetrix [NR] (imputed)	N
1166	chr15	76191643	76191644	rs28607641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q24.2		rs28607641-T	NR	1E-41		0.0263	[0.023-0.03] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1166	chr15	76191643	76191644	rs28607641	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	15q24.2	UBE2Q2	rs28607641-?	NR	4E-11		0.02853	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1166	chr15	76195939	76195940	rs7177266	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q24.2	SNX33, PTPN9, CSPG4, ENSG00000203392, ISL2, C15orf27, RP11-326L17.1, UBE2Q2, NRG4, RP11-685G9.4	rs7177266-C	0.5212	3E-25		10.371	NR z score increase	Illumina [26237160] (imputed)	N
1166	chr15	76195939	76195940	rs7177266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	15q24.2	FBXO22	rs7177266-?	NR	1E-11		0.02833	[0.02-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1166	chr15	76200303	76200304	rs4886466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	15q24.2		rs4886466-G	0.495382	1E-13		0.0222374	[0.016-0.028] unit increase	Illumina [13478778] (imputed)	N
1166	chr15	76223277	76223278	rs117392811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs117392811-G	NR	5E-23		0.0762	[0.061-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
1166	chr15	76223277	76223278	rs117392811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs117392811-G	NR	3E-20		0.0712	[0.056-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1166	chr15	76223277	76223278	rs117392811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs117392811-G	NR	2E-25		0.0801	[0.065-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr15	76223277	76223278	rs117392811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs117392811-G	NR	1E-20		0.072	[0.057-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1166	chr15	76223277	76223278	rs117392811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs117392811-G	NR	2E-26		0.0821	[0.067-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1166	chr15	76239019	76239020	rs11636251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q24.2		rs11636251-T	NR	1E-72		0.0294	[0.026-0.033] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1166	chr15	76239019	76239020	rs11636251	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q24.2	UBE2Q2	rs11636251-?	NR	3E-21				Affymetrix, Illumina [at least 5248638] (imputed)	N
1166	chr15	76239019	76239020	rs11636251	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q24.2	NRG4	rs11636251-T	0.4702	2E-12		0.1914	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1166	chr15	76239067	76239068	rs11636220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	15q24.2		rs11636220-T	0.360433	2E-9		0.0224548	[0.015-0.03] unit increase	Illumina [13478792] (imputed)	N
1166	chr15	76240706	76240707	rs12905847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.2		rs12905847-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1166	chr15	76276149	76276150	rs11634028	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q24.2	NRG4	rs11634028-A	0.2069	9E-13		0.2258	[0.16-0.29] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1166	chr15	76277091	76277092	rs8027685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q24.2	NRG4	rs8027685-C	0.545087	2E-20		0.058258805	[0.046-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr15	76277091	76277092	rs8027685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q24.2	NRG4	rs8027685-C	0.5451	9E-23		0.06188838	[0.05-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr15	76293970	76293971	rs11072566	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	15q24.2	NR	rs11072566-?	NR	9E-8				NR [2500000] (imputed)	N
1167	chr15	76293970	76293971	rs11072566	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	15q24.2	NRG4	rs11072566-A	0.48	3E-10	(EA, Hgb)	0.028	[0.016-0.040] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1167	chr15	76295310	76295311	rs187680191	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Diastolic blood pressure	19,546 British ancestry individuals from 6863 families.	NA	15q24.2	NRG4	rs187680191-T	6.0E-4	3E-9		18.580683	[12.44-24.72] mmHg increase	Illumina [24111857] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q24.2		rs4886755-G	NR	3E-57		0.0285	[0.025-0.032] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q24.2		rs4886755-G	NR	3E-63		0.0324	[0.029-0.036] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q24.2	NR	rs4886755-A	0.49	4E-58		0.0292	[0.026-0.033] unit decrease	NR [NR]	N
1167	chr15	76298131	76298132	rs4886755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q24.2	NRG4	rs4886755-G	0.512422	6E-41		0.030024474	[0.026-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q24.2	NRG4	rs4886755-G	0.51239	2E-44		0.08788592	[0.076-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q24.2	NRG4	rs4886755-G	0.512421	1E-48		0.09226145	[0.08-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.508107	1E-56				Affymetrix, Illumina [24332387] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.511374	1E-56		0.029424	[0.026-0.033] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.508063	8E-75				Affymetrix, Illumina [24653286] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.511547	3E-77		0.034268	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.508083	1E-79				Affymetrix, Illumina [24558453] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q24.2	NR	rs4886755-G	0.511602	2E-81		0.035301	[0.032-0.039] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q24.2	NRG4	rs4886755-A	0.4971	2E-61		0.0041	[0.0035-0.0047] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	15q24.2	NRG4	rs4886755-A	0.4993	9E-6		0.0033	[0.0017-0.0049] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	15q24.2	NRG4	rs4886755-A	0.4953	5E-30		0.008	[0.0066-0.0094] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	15q24.2	NRG4	rs4886755-A	0.508	8E-10	(EA)	0.023571428	[0.016-0.031] unit decrease	Illumina [1986983] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	15q24.2	NRG4	rs4886755-A	0.4969	4E-6	(Japanese)	0.0208	[0.012-0.03] unit decrease	Illumina [1986983] (imputed)	N
1167	chr15	76298131	76298132	rs4886755	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	15q24.2	UBE2Q2, FBXO22, NRG4	rs4886755-G	0.5	8E-6	(men)	0.094	[0.053-0.135] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q24.2	UBE2Q2	rs11072567-A		3E-41		0.029	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.2	NRG4	rs11072567-A	0.5001	3E-39		0.0418	[0.036-0.048] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.2	NRG4	rs11072567-A	0.4894	2E-6	(East Asian)	0.0315	[0.018-0.045] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q24.2	NR	rs11072567-A	0.5123	2E-24	(men)	0.0523	[0.042-0.062] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q24.2	NR	rs11072567-A	0.5066	3E-11	(women)	0.0307	[0.022-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q24.2	NRG4	rs11072567-A	0.496	2E-33		0.004	[0.0034-0.0046] unit increase	Affymetrix [NR] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.2		rs11072567-?	NR	7E-49				NR [~ 8900000] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q24.2	NRG4	rs11072567-G	0.5129	5E-20		0.03276899	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	15q24.2	NRG4	rs11072567-G	0.5128	3E-24		0.03622815	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1167	chr15	76298743	76298744	rs11072567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	15q24.2	NRG4	rs11072567-G	0.5129	2E-26		0.03775806	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1167	chr15	76299827	76299828	rs57737646	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q24.2	NRG4	rs57737646-T	0.0252	5E-14		0.093941	[0.069-0.118] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1167	chr15	76302909	76302910	rs74024059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q24.2	NRG4	rs74024059-G	0.025	2E-14		0.08751406	[0.065-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr15	76302909	76302910	rs74024059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	15q24.2	NRG4	rs74024059-G	0.025	1E-14		0.08753894	[0.065-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q24.2	NRG4	rs10851885-A	0.7559	4E-32		0.05396	[0.045-0.063] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	15q24.2	NRG4	rs10851885-A	0.778	1E-18		0.607	[0.47-0.74] unit increase	Affymetrix [NR] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q24.2	NRG4	rs10851885-A	0.7551	1E-50		0.005	[0.0042-0.0058] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q24.2	UBE2Q2	rs10851885-G	0.22	5E-12		0.419	[0.15-0.69] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		15q24.2	UBE2Q2	rs10851885-A	NR	3E-12		0.0081	[0.0059-0.0103] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1167	chr15	76304502	76304503	rs10851885	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q24.2	NRG4	rs10851885-?	NR	6E-6	(indoxyl sulfate)	0.21748196	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1167	chr15	76309607	76309608	rs76614553	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q24.2	UBE2Q2	rs76614553-C	0.98	1E-8		1.074	[0.46-1.69] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1167	chr15	76347374	76347375	rs199875356	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	15q24.2		rs199875356-CT	0.452047	1E-12		0.0254932	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr15	76355246	76355247	rs76667145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	15q24.2		rs76667145-T	0.173488	5E-9		0.0302652	[0.02-0.04] unit decrease	Illumina [13475706] (imputed)	N
1167	chr15	76355711	76355712	rs62027653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs62027653-G	NR	4E-11		0.0343	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr15	76355711	76355712	rs62027653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs62027653-G	NR	2E-14		0.0396	[0.029-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr15	76355711	76355712	rs62027653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs62027653-G	NR	2E-14		0.0398	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr15	76379201	76379202	rs114849949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q24.2	NR	rs114849949-G	0.01045	3E-8	(FDXR)	0.04224	NR unit increase	Illumina [1671387] (imputed)	N
1168	chr15	76446131	76446132	rs2955742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.2	NR	rs2955742-A	NR	6E-19		0.0283	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr15	76446131	76446132	rs2955742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.2	NR	rs2955742-A	NR	6E-15		0.0248	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr15	76446131	76446132	rs2955742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs2955742-A	NR	2E-20		0.0294	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1168	chr15	76446131	76446132	rs2955742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.2	NR	rs2955742-A	NR	9E-14		0.0237	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr15	76446131	76446132	rs2955742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.2	NR	rs2955742-A	NR	5E-21		0.0299	[0.024-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr15	76466642	76466643	rs111384268	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	15q24.2	NR	rs111384268-?		8E-6		11.3007	[6.39-16.21] unit increase	NR [NR] (imputed)	N
1168	chr15	76470319	76470320	rs567345912	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	15q24.2	NR	rs567345912-?	NR	2E-6		0.800691	[0.47-1.13] unit increase	NR [13958389] (imputed)	N
1168	chr15	76490724	76490727	rs398057836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q24.2		rs398057836-C	NR	3E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1168	chr15	76538458	76538459	rs77633900	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	15q24.2	ETFA	rs77633900-C	0.086	2E-13		1.35	1.25-1.46	Illumina [at least 6769856] (imputed)	N
1168	chr15	76538458	76538459	rs77633900	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	15q24.2	ETFA	rs77633900-C	0.086	1E-7		1.18	1.11-1.25	Illumina [at least 6887412] (imputed)	N
1169	chr15	76546932	76546933	rs1914816	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q24.2	ETFA	rs1914816-?	0.3	7E-7	(CDAS28, EA, RF-)	0.87	[NR] unit increase	Illumina [534053]	N
1169	chr15	76554990	76554991	rs2938697	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q24.2	ETFA	rs2938697-T	0.286478	6E-9		0.0119617	[0.0079-0.016] unit increase	NR [13737936] (imputed)	N
1169	chr15	76578761	76578762	rs1801591	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	15q24.2	ETFA	rs1801591-A	0.09	6E-9		1.36	[1.23-1.51]	Illumina [at least 8427548] (imputed)	N
1169	chr15	76579089	76579090	rs10519134	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q24.2	ISL2, ETFA	rs10519134-A	0.111406492038754	7E-6		0.0038848	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1169	chr15	76602936	76602937	rs12439484	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q24.3	NR	rs12439484-A	0.4534	2E-10				NR [9056863] (imputed)	N
1169	chr15	76617720	76617721	rs74354286	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q24.3	NR	rs74354286-A	0.81498	2E-9		0.0161251	[0.011-0.021] unit increase	NR [NR]	N
1169	chr15	76629608	76629609	rs3866543	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	15q24.3	NR	rs3866543-G	0.523	1E-8		0.022201894	[0.015-0.03] unit increase	NR [~ 10000000] (imputed)	N
1169	chr15	76645026	76645027	rs144077517	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		15q24.3	SCAPER	rs144077517-A	0.005	2E-6	(liability model)	0.54	[0.32-0.76] unit increase	NR [19725427] (imputed)	N
1169	chr15	76673715	76673716	rs3765115	32758111	He M	2020-08-06	J Dent Res	Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.	Nonsyndromic cleft palate	994 Han Chinese ancestry cases, 2,963 Han Chinese ancestry controls	1,095 Han Chinese ancestry cases, 6,352 Han Chinese ancestry controls	15q24.3	NR	rs3765115-?	NR	2E-10		0.79	NR	Illumina [750091]	N
1170	chr15	76700588	76700589	rs2957613	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q24.3	NR	rs2957613-T	NR	5E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
1170	chr15	76717988	76717989	rs11639345	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q24.3	SCAPER	rs11639345-A	0.1015	2E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1170	chr15	76773325	76773326	rs1965492	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	15q24.3	NR	rs1965492-C	0.4236	9E-6		1.9761	NR	Illumina [5393447] (imputed)	N
1170	chr15	76773829	76773830	rs113552766	32239439	Barr PB	2020-04-01	Behav Genet	A Family-Based Genome Wide Association Study of Externalizing Behaviors.	Externalizing behaviour score	7,568 European ancestry individuals, 3,274 African ancestry individuals, 4,270 European and African ancestry individuals	NA	15q24.3	NR	rs113552766-?	NR	3E-7		5.136	NR z score decrease	Affymetrix, Illumina [up to 15537641] (imputed)	N
1170	chr15	76800083	76800084	rs67920045	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q24.3		rs67920045-A	0.5	2E-12		7.05	z score increase	Affymetrix [9061022] (imputed)	N
1170	chr15	76802174	76802175	rs166906	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q24.3	SCAPER	rs166906-T	0.0902	5E-13		0.0033	[0.0023-0.0043] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1171	chr15	76815712	76815713	rs494268	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q24.3	SCAPER	rs494268-T	0.9078	4E-9		0.032	[0.021-0.043] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1171	chr15	76817787	76817788	rs506000	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q24.3	SCAPER	rs506000-T	0.9127	2E-15		0.0038	[0.0026-0.005] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1171	chr15	76826002	76826003	rs2056544	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	15q24.3	ISL2, ETFA	rs2056544-A	0.576838224090554	1E-7		0.0029364	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1171	chr15	76899855	76899856	rs140802894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q24.3		rs140802894-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1171	chr15	76920196	76920197	rs111519289	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	15q24.3	SCAPER	rs111519289-A	0.0535	6E-6		0.0105	[0.006-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
1172	chr15	77006162	77006163	rs183291664	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		15q24.3	SCAPER	rs183291664-T	0.996	3E-6	(liability model)	0.58	[0.34-0.82] unit decrease	NR [19725427] (imputed)	N
1172	chr15	77007421	77007422	rs79045984	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	15q24.3	SCAPER	rs79045984-G	NR	5E-6		3.68	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1172	chr15	77030791	77030792	rs2404602	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA		SCAPER	rs2404602-A	0.44	4E-13	(isobutyrylcarnitine)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1173	chr15	77104855	77104856	rs3099143	25935106	Kim KW	2015-04-30	J Allergy Clin Immunol	Genome-wide association study of recalcitrant atopic dermatitis in Korean children.	Recalcitrant atopic dermatitis	246 Korean ancestry child cases, 551 Korean ancestry adult controls	NA	15q24.3	SCAPER	rs3099143-C	0.137	3E-7		2.126	[1.594-2.841]	Affymetrix [2501352] (imputed)	N
1173	chr15	77177854	77177855	rs118090546	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	15q24.3	SCAPER	rs118090546-T	0.012	7E-6		2.65	[1.84-3.69]	Illumina [64973696] (imputed)	N
1174	chr15	77246989	77246990	rs2469226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q24.3		rs2469226-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1174	chr15	77246989	77246990	rs2469226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.3		rs2469226-A	0.2228	1E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1174	chr15	77247553	77247554	rs932046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q24.3	NR	rs932046-T	NR	7E-12		0.0584	[0.042-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr15	77247553	77247554	rs932046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q24.3	NR	rs932046-T	NR	5E-11		0.056	[0.039-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr15	77247553	77247554	rs932046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.3	NR	rs932046-T	NR	4E-14		0.0643	[0.048-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1174	chr15	77247553	77247554	rs932046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q24.3	NR	rs932046-T	NR	5E-10		0.053	[0.036-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr15	77247553	77247554	rs932046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q24.3	NR	rs932046-T	NR	4E-15		0.0669	[0.05-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1174	chr15	77260574	77260575	rs2404232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q24.3		rs2404232-T	NR	1E-8		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1174	chr15	77266050	77266051	rs62027291	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	15q24.3	RN7SL278P	rs62027291-A	0.1628	6E-9		0.02916964	[0.019-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1174	chr15	77281409	77281410	rs2458247	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q24.3		rs2458247-G	0.45	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
1174	chr15	77303107	77303108	rs62027307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.3		rs62027307-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1174	chr15	77306284	77306285	rs62007171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.3	NR	rs62007171-C	0.284938	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
1174	chr15	77306284	77306285	rs62007171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q24.3	NR	rs62007171-C	0.291138	6E-14		0.015451	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1174	chr15	77306284	77306285	rs62007171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.3	NR	rs62007171-C	0.286789	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
1174	chr15	77306284	77306285	rs62007171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q24.3	NR	rs62007171-C	0.290971	4E-14		0.016231	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1174	chr15	77309458	77309459	rs12912465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.3		rs12912465-T	0.269	1E-10		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1174	chr15	77309458	77309459	rs12912465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q24.3	Intergenic	rs12912465-T	0.269	2E-10	(MTAG)	0.0096	[0.0067-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1174	chr15	77312825	77312826	rs16968627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.3	PSTPIP1	rs16968627-C	NR	8E-10		0.0309093	[0.021-0.041] unit increase	Affymetrix [321016] (imputed)	N
1174	chr15	77313221	77313222	rs114778900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q24.3		rs114778900-G	NR	2E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1174	chr15	77313391	77313392	rs62007212	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	15q24.3	PSTPIP1	rs62007212-A	0.20051	9E-6		0.467153	[0.26-0.67] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1174	chr15	77313570	77313571	rs34127110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q24.3	PSTPIP1	rs34127110-A	0.476954	4E-9		0.013035006	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr15	77313570	77313571	rs34127110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q24.3	PSTPIP1	rs34127110-A	0.477006	3E-10		0.013990615	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr15	77313570	77313571	rs34127110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q24.3		rs34127110-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1174	chr15	77315131	77315132	rs3936040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q24.3	NR	rs3936040-T	0.197897	2E-11		0.015745	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1175	chr15	77335890	77335891	rs11636648	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	15q24.3	NR	rs11636648-T	0.331790531605395	4E-6				NR [9276018] (imputed)	N
1175	chr15	77335901	77335902	rs11636613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.3	RP11-797A18.3	rs11636613-A	NR	7E-9		0.0192277	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1175	chr15	77335901	77335902	rs11636613	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q24.3	NR	rs11636613-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1175	chr15	77339495	77339496	rs377247337	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q24.3	HMG20A	rs377247337-G	0.99	1E-7		1.33	1.20-1.48	Illumina [12557761] (imputed)	N
1175	chr15	77344792	77344793	rs11737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q24.3		rs11737-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1175	chr15	77376182	77376183	rs17466257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.3	TSPAN3	rs17466257-A	NR	1E-8		0.0165141	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1175	chr15	77376182	77376183	rs17466257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.3	TSPAN3	rs17466257-A	NR	4E-11		0.0207991	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1175	chr15	77376182	77376183	rs17466257	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q24.3	NR	rs17466257-A	0.396631	5E-9		0.0408125	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
1175	chr15	77384001	77384002	rs4886849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q24.3		rs4886849-C	0.762279	1E-10		0.016885564	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1175	chr15	77384001	77384002	rs4886849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q24.3	NR	rs4886849-C	0.762119	2E-11		0.015725	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1175	chr15	77386674	77386675	rs12901297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.3		rs12901297-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1175	chr15	77388984	77388985	rs4243044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q24.3	PEAK1	rs4243044-T	NR	1E-8		0.0222928	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
1175	chr15	77404159	77404160	rs4886850	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q24.3	PEAK1	rs4886850-?		1E-9				Affymetrix, Illumina [NR] (imputed)	N
1175	chr15	77416034	77416035	rs150171768	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PEAK1	rs150171768-?	NR	2E-11		2.82087	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1176	chr15	77563598	77563599	rs190467522	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q24.3		rs190467522-T	NR	6E-6		0.79184		Affymetrix, Illumina [62056310] (imputed)	N
1176	chr15	77591534	77591535	rs6495237	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q24.3	NA	rs6495237-T		3E-9		0.0113928	[0.0076-0.0151] unit increase	Illumina [13288253] (imputed)	N
1176	chr15	77593411	77593412	rs148490292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q24.3		rs148490292-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1177	chr15	77641570	77641571	rs142301509	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.3	PEAK1	rs142301509-T	NR	2E-8		0.0193358	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1177	chr15	77673458	77673459	rs7166927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q24.3		rs7166927-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1177	chr15	77711718	77711719	rs62007299	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q24.3		rs62007299-?	NR	3E-8		0.0124205	[0.008-0.0168] unit increase	NR [6912294] (imputed)	N
1177	chr15	77711718	77711719	rs62007299	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	15q24.3		rs62007299-G	0.287463	4E-8		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
1177	chr15	77711718	77711719	rs62007299	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	15q24.3	NR	rs62007299-A	0.709377	2E-11		0.014437	[0.01-0.019] unit decrease	Affymetrix [16668957] (imputed)	N
1177	chr15	77723194	77723195	rs62007304	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.3		rs62007304-A	0.9753	2E-8		0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1178	chr15	77728161	77728161	rs35390385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q24.3		rs35390385-CT	NR	4E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1178	chr15	77731236	77731237	rs148002527	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HMG20A	rs148002527-?	NR	2E-11		2.81318	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	15q24.3	HMG20A	rs7178572-A	0.2994	7E-10		0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	15q24.3	HMG20A	rs7178572-G	0.688	6E-6		0.0146	[0.0083-0.0209] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	15q24.3	HMG20A	rs7178572-G	0.688	3E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q24.3	HMG20A	rs7178572-G	0.6928	2E-8	(EA)	0.0618	[0.04-0.083] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q24.3	HMG20A	rs7178572-G	0.4836	6E-7	(South Asian)	0.0783	[0.048-0.109] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q24.3	HMG20A	rs7178572-G	0.4836	1E-17		0.065	[0.049-0.081] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	15q24.3	HMG20A	rs7178572-G	0.7	2E-11		1.08	[1.04-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
1178	chr15	77747189	77747190	rs7178572	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	15q24.3	HMG20A	rs7178572-G	0.70	1E-8	(Obese)	1.11	[1.07-1.15]	NR [NR]	N
1178	chr15	77747189	77747190	rs7178572	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	15q24.3	HMG20A	rs7178572-G	0.52	7E-11		1.09	[1.06-1.12]	Illumina [568976]	N
1178	chr15	77747275	77747276	rs11633054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	15q24.3		rs11633054-G	NR	6E-17		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1178	chr15	77759294	77759295	rs2055901	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q24.3	NR	rs2055901-G	0.5932	2E-11		0.059	[0.042-0.076] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1178	chr15	77776497	77776498	rs952471	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	15q24.3	NR	rs952471-G	0.534	4E-9		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [945603] (imputed)	N
1178	chr15	77776561	77776562	rs952472	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q24.3	HMG20A	rs952472-C	0.395	2E-26		1.07	[1.06-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
1178	chr15	77777631	77777632	rs7119	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	15q24.3	HMG20A	rs7119-T	0.19	5E-7	(Chinese+Malay+Indian)	1.24	[1.14-1.34]	Illumina [~ 2000000] (imputed)	N
1178	chr15	77781925	77781926	rs965480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q24.3		rs965480-G	0.408935906	7E-22		0.08940768	[0.071-0.108] unit increase	Illumina [13429769] (imputed)	N
1178	chr15	77781925	77781926	rs965480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q24.3		rs965480-G	0.413646094	7E-12		0.068453066	[0.049-0.088] unit increase	Illumina [13134967] (imputed)	N
1178	chr15	77781925	77781926	rs965480	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q24.3		rs965480-G	0.409671867	2E-15		1.0688976	[1.051479164-1.086604578]	Illumina [8919992] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q24.3		rs12910361-G	NR	4E-26		0.0696	[0.057-0.083] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q24.3		rs12910361-G	NR	4E-21		0.0742	[0.059-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q24.3	NR	rs12910361-G	0.6982	3E-44		0.0716	[0.062-0.082] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q24.3	NR	rs12910361-G	0.614	5E-65		0.0686	[0.061-0.076] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	15q24.3	HMG20A	rs12910361-A	0.28639	7E-11		0.083818465	[0.059-0.109] unit decrease	Affymetrix [7288503] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q24.3	HMG20A	rs12910361-G	0.41	1E-11		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1178	chr15	77782334	77782335	rs12910361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	15q24.3		rs12910361-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1178	chr15	77799656	77799657	rs4886869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	15q24.3		rs4886869-G	0.412848	1E-8		0.0244053	[0.016-0.033] unit increase	Illumina [13466143] (imputed)	N
1178	chr15	77799656	77799657	rs4886869	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q24.3	HMG20A	rs4886869-A	0.3902	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1178	chr15	77799656	77799657	rs4886869	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	15q24.3	HMG20A, LINGO1	rs4886869-?	NR	1E-8		0.04028	[0.027-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1178	chr15	77802790	77802791	rs11857450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q24.3		rs11857450-C	NR	2E-37		0.0281	[0.024-0.032] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1178	chr15	77808597	77808598	rs12898370	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		15q24.3	LINGO1	rs12898370-?	0.872	4E-8	(AA, men)			Illumina [at least 550000] (imputed)	N
1178	chr15	77818127	77818128	rs1005752	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q24.3	HMG20A	rs1005752-A	0.7154	3E-29		1.08	[1.07-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1178	chr15	77819675	77819676	rs7172809	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	15q24.3	intergenic	rs7172809-?		9E-6	(MCRI)	0.18	[0.082-0.278] unit increase	Illumina [693128]	N
1178	chr15	77825081	77825082	rs16968893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q24.3	RP11-307C19.1	rs16968893-G	NR	8E-11		0.0205189	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1178	chr15	77828078	77828079	rs112597175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q24.3	NR	rs112597175-A	0.386934	9E-11		0.012877	[0.009-0.0168] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1178	chr15	77828097	77828098	rs7495653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.3	NR	rs7495653-G	0.36386	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
1178	chr15	77830305	77830306	rs869310	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	15q24.3	LINGO1	rs869310-G	NR	2E-8		0.88	[0.83-0.93]	Illumina [NR] (imputed)	N
1178	chr15	77832761	77832762	rs7177055	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	15q24.3	HMG20A	rs7177055-A	0.7105	4E-6		0.0071	[0.0044-0.0098] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1178	chr15	77832761	77832762	rs7177055	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	15q24.3	LOC101929457, HMG20A	rs7177055-G	0.28171133230901	3E-16		0.0647	[0.049-0.08] unit decrease	NR [5035015] (imputed)	N
1178	chr15	77832761	77832762	rs7177055	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	15q24.3	HMG20A	rs7177055-A	NR	2E-6	(men)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1178	chr15	77832761	77832762	rs7177055	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	15q24.3	HMG20A	rs7177055-A	0.678861782001094	5E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1178	chr15	77833523	77833524	rs12901998	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	15q24.3	NR	rs12901998-A	NR	7E-7		0.01029	[0.0062-0.0143] unit decrease	Illumina [~ 540852]	N
1178	chr15	77837054	77837055	rs62009090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q24.3		rs62009090-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1178	chr15	77842296	77842297	rs78928643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q24.3	NR	rs78928643-G	0.394489	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
1178	chr15	77847352	77847353	rs11637932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	15q24.3		rs11637932-G	NR	3E-10		0.0631	[0.044-0.083] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1178	chr15	77851534	77851535	rs2137111	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	15q24.3	LRRN6A	rs2137111-?	NR	7E-6	(fPS)			Illumina [283437]	N
1178	chr15	77853735	77853736	rs12593629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q24.3		rs12593629-?	NR	2E-10		0.0139517	[0.0095-0.0184] unit decrease	Affymetrix [20259828] (imputed)	N
1179	chr15	77865554	77865555	rs8039399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q24.3		rs8039399-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1179	chr15	77872190	77872191	rs2667773	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	15q24.3	LINGO1	rs2667773-A	0.686772	3E-9		0.014947	[0.01-0.02] unit increase	Affymetrix [19400838] (imputed)	N
1179	chr15	77873548	77873549	rs868299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	15q24.3	NR	rs868299-A	NR	2E-15		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1179	chr15	77883129	77883130	rs2667761	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q24.3	NR	rs2667761-C	0.3625	7E-10		0.01591815	[0.011-0.021] unit decrease	Affymetrix [10549349] (imputed)	N
1179	chr15	77895492	77895493	rs11854772	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC046168.2	rs11854772-?	NR	1E-10		2.81181	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1179	chr15	77903391	77903392	rs142660142	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		15q24.3	Intergenic	rs142660142-T	0.986	2E-6	(liability model)	0.34	[0.2-0.48] unit decrease	NR [19725427] (imputed)	N
1179	chr15	77963886	77963887	rs9652490	19182806	Stefansson H	2009-02-01	Nat Genet	Variant in the sequence of the LINGO1 gene confers risk of essential tremor.	Essential tremor	452 European ancestry cases, 14,378 European ancestry controls	301 European ancestry cases, 1,419 European ancestry controls	15q24.3	LINGO1	rs9652490-G	0.23	1E-9		1.55	[1.35-1.79]	Illumina [305624]	N
1179	chr15	77973390	77973391	rs61521110	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	15q24.3	LINGO1	rs61521110-?	NR	6E-7		4.991	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1180	chr15	77995948	77995949	rs61331678	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	15q24.3	NR	rs61331678-?		6E-12		0.0150461	[0.011-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1180	chr15	77995948	77995949	rs61331678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q24.3	Intergenic	rs61331678-C	0.4315	5E-8	(MTAG)	0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1180	chr15	77999435	77999436	rs11072662	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q24.3	intergenic	rs11072662-A	0.48019999999999996	9E-13		7.141	z score increase	Illumina [18485882] (imputed)	N
1180	chr15	78001010	78001011	rs62009152	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	15q24.3	NR	rs62009152-T	0.219682	1E-8		0.047954757	[0.031-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1180	chr15	78006841	78006842	rs7175083	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	15q24.3	NR	rs7175083-T	NR	2E-10		0.01467	[0.01-0.019] unit increase	Affymetrix [10847151] (imputed)	N
1180	chr15	78006898	78006899	rs56391344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.3		rs56391344-A	0.2526	7E-20		0.0148	[0.012-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1180	chr15	78006898	78006899	rs56391344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q24.3	Intergenic	rs56391344-A	0.2526	1E-20	(MTAG)	0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1180	chr15	78007212	78007213	rs4076457	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q24.3	LINGO1	rs4076457-T	0.2511	2E-8		0.013044111	[0.0085-0.0176] unit increase	Affymetrix [up to 18485882] (imputed)	N
1180	chr15	78007212	78007213	rs4076457	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q24.3	NR	rs4076457-T	0.2538	9E-9		0.014808567	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1180	chr15	78012617	78012618	rs11855853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q24.3		rs11855853-T	NR	4E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1180	chr15	78012617	78012618	rs11855853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q24.3		rs11855853-T	NR	4E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1180	chr15	78012617	78012618	rs11855853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q24.3		rs11855853-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1180	chr15	78012687	78012688	rs11856579	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q24.3	LINGO1	rs11856579-G	0.732386	3E-9		0.00917954	[0.0061-0.0122] unit increase	Affymetrix [12370749]	N
1180	chr15	78012687	78012688	rs11856579	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q24.3	NA	rs11856579-A	0.2608	1E-16		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1180	chr15	78012687	78012688	rs11856579	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q24.3	NA	rs11856579-A	0.2608	1E-16		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1180	chr15	78012687	78012688	rs11856579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q24.3		rs11856579-A	0.2617	3E-20	(conditional-joint)	0.0148	[0.012-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1180	chr15	78015202	78015203	rs12915704	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q24.3	LINGO1	rs12915704-T	0.4426	3E-9		0.01204549	[0.0081-0.016] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1180	chr15	78018853	78018854	rs4360891	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q24.3	NR	rs4360891-T	NR	2E-11		6.697	z score decrease	Affymetrix [10847151] (imputed)	N
1180	chr15	78020131	78020132	rs4468571	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q24.3		rs4468571-A	0.5765	2E-7		37.22236	z score increase	NR [6814003]	N
1180	chr15	78020131	78020132	rs4468571	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q24.3	LINGO1	rs4468571-?	NR	1E-10		0.013117198	[0.0091-0.0171] unit decrease	NR [7306098]	N
1180	chr15	78025463	78025464	rs62007780	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q24.3	NR	rs62007780-T	0.416	1E-10		0.00705532	[0.0049-0.0092] unit decrease	NR [9732723] (imputed)	N
1180	chr15	78025463	78025464	rs62007780	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q24.3	NR	rs62007780-T	0.416	7E-10		0.015913295	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1180	chr15	78026600	78026601	rs62007781	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs62007781-?	NR	1E-10				NR [NR]	N
1180	chr15	78029535	78029536	rs12438542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q24.3		rs12438542-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1180	chr15	78029796	78029797	rs62007782	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q24.3	NR	rs62007782-A	0.2659	5E-10		0.017409675	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1180	chr15	78032356	78032357	rs11633354	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	5E-10				NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	4E-10				NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	2E-9				NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	1E-10				NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	1E-8				NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q24.3	NR	rs11633354-C	0.514257061222656	5E-11		0.006034633	[0.0042-0.0078] unit decrease	NR [NR]	N
1180	chr15	78032356	78032357	rs11633354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	15q24.3		rs11633354-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1180	chr15	78033734	78033735	rs12903563	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	15q24.3	NR	rs12903563-T	0.4798	1E-9		0.01176	[0.008-0.0155] unit increase	NR [8968716] (imputed)	N
1180	chr15	78033734	78033735	rs12903563	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	15q24.3	LINGO1	rs12903563-T	NR	3E-8		0.0096037	[0.0062-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
1180	chr15	78033734	78033735	rs12903563	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	15q24.3	NR	rs12903563-C	0.5182	1E-8		0.0164	[0.011-0.022] unit decrease	Illumina [NR] (imputed)	N
1180	chr15	78033734	78033735	rs12903563	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q24.3	NR	rs12903563-C	0.51759	5E-9		0.032663	[0.022-0.044] unit decrease	Illumina [18485882] (imputed)	N
1180	chr15	78033734	78033735	rs12903563	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	15q24.3	LINGO1	rs12903563-T	0.497	3E-8		0.019773796	[0.013-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
1180	chr15	78034267	78034268	rs3935685	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	15q24.3	LINGO1	rs3935685-C	0.4445	1E-12		0.014486689	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1180	chr15	78034267	78034268	rs3935685	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q24.3	Intergenic	rs3935685-T	0.5593	1E-15	(MTAG)	0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1180	chr15	78034267	78034268	rs3935685	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q24.3	LINGO1	rs3935685-T	NR	4E-8		0.016079413	[0.01-0.022] unit decrease	Affymetrix [NR]	N
1180	chr15	78034702	78034703	rs62007784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q24.3	Intergenic	rs62007784-C	0.5592	9E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1180	chr15	78060785	78060786	rs62007820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q24.3		rs62007820-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1180	chr15	78064663	78064664	rs8035460	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q24.3	NR	rs8035460-T	NR	4E-8		5.487	z score decrease	Affymetrix [10847151] (imputed)	N
1180	chr15	78064910	78064911	rs72730718	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q24.3		rs72730718-C	0.929	4E-11		0.018	[0.012-0.024] unit increase	NR [NR] (imputed)	N
1180	chr15	78067632	78067633	rs7170398	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	15q24.3	NR	rs7170398-?		3E-8				NR [520857]	N
1180	chr15	78067632	78067633	rs7170398	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	15q24.3	NR	rs7170398-?		2E-8				NR [11140414]	N
1180	chr15	78067632	78067633	rs7170398	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q24.3	NR	rs7170398-T	0.399829686793855	4E-11		0.009892603	[0.007-0.0128] unit increase	NR [NR]	N
1180	chr15	78067632	78067633	rs7170398	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	15q24.3	NR	rs7170398-T	0.399829686793855	2E-10		0.008051645	[0.0056-0.0105] unit increase	NR [NR]	N
1180	chr15	78067632	78067633	rs7170398	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	15q24.3	NR	rs7170398-T	0.399829686793855	4E-11		0.0063068178	[0.0044-0.0082] unit increase	NR [NR]	N
1180	chr15	78067632	78067633	rs7170398	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	15q24.3	NR	rs7170398-T	NR	2E-8		5.618	z score increase	Affymetrix [10847151] (imputed)	N
1180	chr15	78078902	78078903	rs4624137	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q24.3	TBC1D2B	rs4624137-?	NR	8E-6	(hypoxanthine)	0.19906804	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1180	chr15	78080736	78080737	rs11629621	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	15q24.3	NR	rs11629621-C	NR	4E-8		5.48	z score decrease	Affymetrix [10847151] (imputed)	N
1180	chr15	78094806	78094807	rs3935182	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	15q24.3	NR	rs3935182-G	0.4207	7E-12		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1180	chr15	78101908	78101909	rs3936093	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	15q24.3	NR	rs3936093-G	0.570309848564562	1E-10		0.007398149	[0.0052-0.0096] unit increase	NR [NR]	N
1180	chr15	78101908	78101909	rs3936093	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q24.3	NR	rs3936093-A	NR	9E-9		5.751	z score decrease	Affymetrix [10847151] (imputed)	N
1180	chr15	78101908	78101909	rs3936093	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	15q24.3	NR	rs3936093-?	NR	1E-8		0.01338	[0.0088-0.018] unit decrease	Affymetrix [10847151] (imputed)	N
1180	chr15	78101908	78101909	rs3936093	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	15q24.3	SCAPER	rs3936093-A	0.432908	2E-10		6.36	z score decrease	NR [10847151] (imputed)	N
1180	chr15	78101908	78101909	rs3936093	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	15q24.3	LINGO1	rs3936093-A	0.432908	6E-9		5.83	z score decrease	NR [10847151] (imputed)	N
1180	chr15	78114051	78114052	rs4886920	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q24.3	NR	rs4886920-G	0.704173931494938	1E-9		0.0060963994	[0.0041-0.0081] unit increase	NR [NR]	N
1180	chr15	78114051	78114052	rs4886920	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q24.3	intergenic	rs4886920-A	0.29499	2E-8		5.594	z score decrease	Illumina [18485882] (imputed)	N
1181	chr15	78142393	78142394	rs6416511	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q24.3	NR	rs6416511-A	NR	5E-8		5.459	z score decrease	Affymetrix [10847151] (imputed)	N
1181	chr15	78164705	78164706	rs11857176	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	15q24.3	LOC100302666	rs11857176-A	0.515	8E-7	(Recessive model)	1.8	[1.127-2.874]	Illumina [733202]	N
1181	chr15	78191073	78191074	rs59712011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q24.3		rs59712011-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1181	chr15	78230928	78230929	rs11635174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q24.3	RP11-114H24.4	rs11635174-G	0.711212	2E-10		0.01575536	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr15	78230928	78230929	rs11635174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q24.3	RP11-114H24.4	rs11635174-G	0.711199	1E-10		0.015926676	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr15	78231116	78231117	rs117064051	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q24.3	NR	rs117064051-T	NR	1E-9		0.039	[0.026-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1181	chr15	78231396	78231397	rs12901519	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q24.3	NR	rs12901519-?	NR	6E-7			[NR]	Illumina [5779266] (imputed)	N
1181	chr15	78239269	78239269	rs71447177	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	15q24.3	NR	rs71447177-?	NR	4E-6		0.1462	[0.085-0.208] unit increase	Illumina [at least 560000] (imputed)	N
1181	chr15	78243578	78243579	rs4886550	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q24.3	NR	rs4886550-G	0.288	5E-9	(Conditioned on chr15:78836288, chr15:78812098, chr15:78911181, chr15:78906177, chr15:78849779, chr15:78908565, chr15:78814046)	0.019931013	[0.013-0.027] unit decrease	NR [~ 10000000] (imputed)	N
1182	chr15	78269471	78269472	rs12906542	23354978	Rinella ES	2013-01-25	Hum Genet	Genetic variants associated with breast cancer risk for Ashkenazi Jewish women with strong family histories but no identifiable BRCA1/2 mutation.	Breast cancer	477 Ashkenazi Jewish cases, 524 Ashkenazi Jewish controls	203 Ashkenazi Jewish cases, 263 Ashkenazi Jewish contols	15q24.3	intergenic	rs12906542-?	0.93	7E-7	(Meta P value)	2.0	[NR]	Affymetrix [435632]	N
1182	chr15	78275394	78275395	rs58226358	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q24.3	NR	rs58226358-T	NR	2E-6	(GEE model)	1.0128	[0.6-1.43] unit decrease	NR [NR] (imputed)	N
1182	chr15	78312056	78312058	rs75996364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q25.1		rs75996364-C	NR	5E-23		0.0273	[0.022-0.033] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1182	chr15	78312056	78312058	rs75996364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q25.1		rs75996364-C	NR	6E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1182	chr15	78325228	78325229	rs4886992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	15q25.1		rs4886992-T	0.79388	1E-9		0.0308663	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1182	chr15	78330013	78330014	rs28417785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q25.1	NR	rs28417785-C	NR	2E-16		0.0657	[0.05-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1182	chr15	78351043	78351044	rs872926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	15q25.1		rs872926-A	NR	1E-36		0.0346	[0.029-0.04] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1182	chr15	78375228	78375229	rs112386516	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	15q25.1	ACSBG1, CIB2, CRABP1, DNAJA4, IDH3A, LOC91450, LOC645752, MIR5003, SH2D7, TBC1D2B, WDR61	rs112386516-?	NR	1E-6				Illumina [9143600] (imputed)	N
1182	chr15	78379183	78379184	rs56280304	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q25.1	NR	rs56280304-A	NR	9E-11		0.0248	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1183	chr15	78381659	78381660	rs4473152	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	15q25.1	SH2D7	rs4473152-G	0.14	8E-7		0.12	unit increase	Affymetrix [5396780] (imputed)	N
1183	chr15	78387294	78387295	rs138068587	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	15q25.1	SH2D7	rs138068587-A	0.006219	6E-6		19.98	[6.97-57.20]	Affymetrix [7675561] (imputed)	N
1183	chr15	78423478	78423479	rs8040395	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	15q25.1	NR	rs8040395-?	NR	2E-8				Affymetrix, Illumina [6210360] (imputed)	N
1183	chr15	78439119	78439120	rs2028548	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Osteoporosis	443 Korean ancestry cases, 2,223 Korean ancestry controls	NA	15q25.1	NR	rs2028548-C	NR	7E-6		0.652	[0.541-0.7858]	Affymetrix [NR]	N
1184	chr15	78524198	78524199	rs57729539	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	15q25.1	NR	rs57729539-G	0.17000000000000004	6E-6		1.3157895	[1.16-1.47]	NR [8814543] (imputed)	N
1184	chr15	78530260	78530261	rs12910114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q25.1		rs12910114-T	NR	6E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1184	chr15	78530939	78530940	rs1533665	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	15q25.1	ACSBG1	rs1533665-G	0.36	7E-6	(Novelty Seeking)	0.1	[NR] unit decrease	Affymetrix, Illumina [1252387] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q25.1		rs4887023-G	NR	1E-32		0.0208	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	15q25.1		rs4887023-G	0.595769	4E-8		0.0175655	[0.011-0.024] unit decrease	Illumina [13479135] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q25.1	NR	rs4887023-G	0.392196	7E-16		0.015255	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs4887023-G	0.433702	2E-27				Affymetrix, Illumina [24653286] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q25.1	NR	rs4887023-G	0.3921	4E-27		0.020445	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	15q25.1		rs4887023-?	0.3805	6E-6		0.099	[0.056-0.142] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	15q25.1		rs4887023-?	0.3739	5E-13		0.0573	[0.042-0.073] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	15q25.1		rs4887023-?	0.3372	1E-6		0.0531	[0.032-0.075] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1184	chr15	78535436	78535437	rs4887023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.1		rs4887023-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1184	chr15	78536528	78536529	rs12904669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q25.1	ACSBG1	rs12904669-T	0.392312	2E-22		0.02732575	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78536528	78536529	rs12904669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q25.1	ACSBG1	rs12904669-T	0.392298	5E-27		0.030641021	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78536528	78536529	rs12904669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q25.1	ACSBG1	rs12904669-T	0.392144	2E-11		0.0157353	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78536528	78536529	rs12904669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q25.1	ACSBG1	rs12904669-T	0.392179	8E-28		0.025136083	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78536528	78536529	rs12904669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q25.1	ACSBG1	rs12904669-T	0.392163	6E-36		0.028782388	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78536682	78536683	rs12439043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs12439043-T	0.433724	4E-44				Affymetrix, Illumina [24332387] (imputed)	N
1184	chr15	78536682	78536683	rs12439043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q25.1	NR	rs12439043-T	0.392128	3E-40		0.025205	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1184	chr15	78536682	78536683	rs12439043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs12439043-T	0.432651	8E-24				Affymetrix, Illumina [21126107] (imputed)	N
1184	chr15	78536682	78536683	rs12439043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q25.1	NR	rs12439043-T	0.393039	2E-20		0.018956	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1184	chr15	78537154	78537155	rs1879154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q25.1	NR	rs1879154-T	0.604699	4E-191		0.056786	[0.053-0.061] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1184	chr15	78537154	78537155	rs1879154	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q25.1	ACSBG1	rs1879154-C	0.3953	3E-57		0.05770335	[0.051-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78537154	78537155	rs1879154	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	15q25.1	ACSBG1	rs1879154-C	0.3953	2E-13		0.02656367	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78537235	78537236	rs58119220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	15q25.1	ACSBG1	rs58119220-G	0.3965	6E-18		0.03052834	[0.024-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78537238	78537238	rs3053061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q25.1	ACSBG1	rs3053061-CGGGGTGCGG	0.394512	9E-44		0.032004677	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78537238	78537238	rs3053061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q25.1	ACSBG1	rs3053061-CGGGGTGCGG	0.394314	4E-23		0.022430168	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78537238	78537238	rs3053061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q25.1	ACSBG1	rs3053061-CGGGGTGCGG	0.394319	6E-23		0.023130208	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78537326	78537327	rs11854210	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q25.1	NR	rs11854210-C	0.317453	8E-11		0.013233	[0.0092-0.0172] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1184	chr15	78539091	78539092	rs7166069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs7166069-A	0.434207	2E-15				Affymetrix, Illumina [24588908] (imputed)	N
1184	chr15	78546917	78546918	rs117873131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q25.1		rs117873131-A	NR	6E-11		0.0545	[0.038-0.071] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1184	chr15	78546917	78546918	rs117873131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q25.1	RP11-762H8.3	rs117873131-A	0.020509	2E-11		0.053240653	[0.038-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78551926	78551927	rs11638511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	15q25.1		rs11638511-G	NR	6E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1184	chr15	78551926	78551927	rs11638511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	15q25.1		rs11638511-G	0.369895	4E-12		0.0224577	[0.016-0.029] unit increase	Illumina [13478961] (imputed)	N
1184	chr15	78551926	78551927	rs11638511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	15q25.1	NR	rs11638511-A	0.630614	3E-11		0.025832	[0.018-0.033] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
1184	chr15	78551926	78551927	rs11638511	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	15q25.1	RP11-762H8.3	rs11638511-G	0.5617	2E-11		0.02421569	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78552232	78552232	rs34002784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	15q25.1		rs34002784-CA	0.369739	3E-8		0.0206422	[0.013-0.028] unit decrease	Illumina [13477028] (imputed)	N
1184	chr15	78552232	78552232	rs34002784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q25.1	RP11-762H8.3	rs34002784-CA	0.561124	2E-32		0.026499	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78556580	78556591	rs200375873	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	15q25.1		rs200375873-G	NR	1E-9		0.12	[0.081-0.159] unit decrease	Illumina [76131582]	N
1184	chr15	78556588	78556589	rs12898295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q25.1	Intergenic	rs12898295-C	0.1798	2E-8		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1184	chr15	78557391	78557392	rs113594982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q25.1	DNAJA4	rs113594982-T	0.11185	2E-37		0.049974065	[0.042-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78559766	78559767	rs12442376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q25.1	DNAJA4	rs12442376-G	0.722772	6E-17		0.023066437	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78559766	78559767	rs12442376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q25.1	DNAJA4	rs12442376-G	0.722755	1E-20		0.025806636	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78559807	78559807	rs71148512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q25.1	DNAJA4	rs71148512-GT	0.411005	9E-57		0.03976085	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78559807	78559807	rs71148512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q25.1	DNAJA4	rs71148512-GT	0.410948	5E-15		0.018061621	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78559807	78559807	rs71148512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q25.1	DNAJA4	rs71148512-GT	0.410918	3E-12		0.01613899	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q25.1	DNAJA4	rs61752771-C	0.02147	5E-24		0.08008791	[0.065-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q25.1	DNAJA4	rs61752771-C	0.021471	4E-20		0.07268592	[0.057-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q25.1	DNAJA4	rs61752771-C	0.0214530000000001	2E-12		0.0550583	[0.041-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q25.1	DNAJA4	rs61752771-C	0.021448	1E-22		0.07574676	[0.061-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q25.1	DNAJA4	rs61752771-C	0.021447	6E-20		0.07073571	[0.056-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs61752771-T	0.979888	7E-14				Affymetrix, Illumina [24246363] (imputed)	N
1184	chr15	78562866	78562867	rs61752771	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q25.1	NR	rs61752771-T	0.979237	2E-16		0.05301	[0.04-0.066] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q25.1	DNAJA4	rs3169166-C	0.415722	3E-26		0.024068886	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs3169166-A	0.58408	2E-197				Affymetrix, Illumina [22063850] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q25.1		rs3169166-?	NR	3E-124				NR [~ 8900000] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q25.1	DNAJA4	rs3169166-C	NR	6E-38		0.0503532	[0.042-0.058] unit decrease	Affymetrix [16832071] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	15q25.1	DNAJA4	rs3169166-C	0.4154	3E-15		0.02873104	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78563102	78563103	rs3169166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	15q25.1	DNAJA4	rs3169166-C	0.4154	9E-20		0.03310065	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78563391	78563391	rs35220396	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.1	DNAJA4	rs35220396-T	0.674997	8E-28	(dihydroorotate)	0.262	[0.21-0.31] unit increase	Illumina [13039987] (imputed)	N
1184	chr15	78565819	78565820	rs11853189	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q25.1	DNAJA4	rs11853189-T	0.1124	9E-54		0.08716465	[0.076-0.098] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1184	chr15	78565840	78565841	rs11853191	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.1	DNAJA4	rs11853191-T	0.110014	2E-16	(dihydroorotate)	0.293	[0.22-0.36] unit decrease	Illumina [13039987] (imputed)	N
1184	chr15	78565840	78565841	rs11853191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q25.1	DNAJA4	rs11853191-T	0.159321	4E-10		0.019571526	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1184	chr15	78567956	78567957	rs202103276	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	15q25.1		rs202103276-?	NR	5E-10		0.557536	[0.37-0.75] unit increase	NR [9800000] (imputed)	N
1184	chr15	78569929	78569930	rs8032417	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	15q25.1	DNAJA4	rs8032417-?		5E-6	(French Canadians)	1.6991718		Illumina [7614484] (imputed)	N
1184	chr15	78572358	78572359	rs9806426	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.1	NR	rs9806426-C	0.0122	2E-8	(MPO)	0.1402	NR unit decrease	Illumina [1671387] (imputed)	N
1184	chr15	78574786	78574787	rs2867933	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q25.1	DNAJA4	rs2867933-T	NR	3E-13		0.0520158	[0.038-0.066] unit increase	Affymetrix [16832071] (imputed)	N
1184	chr15	78588971	78588972	rs56299741	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q25.1	Intergenic	rs56299741-T	0.2185	1E-8	(MTAG)	0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr15	78590413	78590414	rs11854322	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	15q25.1	DNAJA4, WDR61	rs11854322-C		1E-14		0.027	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1184	chr15	78593342	78593343	rs34757410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q25.1	Intergenic	rs34757410-T	0.3397	5E-10	(MTAG)	0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr15	78593342	78593343	rs34757410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q25.1	Intergenic	rs34757410-T	0.339	1E-9	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr15	78594446	78594447	rs6495287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q25.1	WDR61	rs6495287-T	0.324493	3E-10		0.020004962	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78599994	78599995	rs4887030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q25.1		rs4887030-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1184	chr15	78604484	78604485	rs870731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q25.1	NR	rs870731-T	0.328759	7E-9		0.018015817	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr15	78609852	78609853	rs4887033	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	15q25.1	RP11-762H8.5	rs4887033-T	0.37	3E-6		0.41	[0.23-0.59] unit increase	Illumina [5833901] (imputed)	N
1184	chr15	78614391	78614392	rs114106603	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	15q25.1	NR	rs114106603-?	NR	5E-7		5771.422	NR unit decrease	Illumina [2379855]	N
1184	chr15	78617085	78617086	rs8040826	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	15q25.1	NR	rs8040826-?		4E-6	(African)			Illumina [~ 5190000] (imputed)	N
1185	chr15	78674769	78674770	rs75020883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.1		rs75020883-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1185	chr15	78684050	78684051	rs11630879	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q25.1	NR	rs11630879-?	NR	4E-6		0.91	[0.72-1.15]	Illumina [539000] (imputed)	N
1185	chr15	78686822	78686823	rs11635084	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q25.1	Intergenic	rs11635084-A	0.6102	2E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1185	chr15	78698758	78698759	rs7163013	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q25.1	IREB2	rs7163013-G	0.351	9E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1185	chr15	78712698	78712699	rs4887053	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887053-A	0.82	5E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78712698	78712699	rs4887053	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887053-A	0.819	6E-7		0.056	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78714560	78714561	rs2869032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869032-T	0.82	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78714560	78714561	rs2869032	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869032-T	0.819	3E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78716385	78716386	rs57947079	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	15q25.1	NR	rs57947079-?	0.18	5E-7		1.68	[1.37-2.05]	Illumina [5934489] (imputed)	N
1185	chr15	78718898	78718899	rs2869045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs2869045-C	0.767995	4E-14				Affymetrix, Illumina [20825802] (imputed)	N
1185	chr15	78718898	78718899	rs2869045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q25.1		rs2869045-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1185	chr15	78718898	78718899	rs2869045	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869045-T	0.191	4E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78718898	78718899	rs2869045	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869045-T	0.191	3E-7		0.056	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78719500	78719501	rs72736802	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs72736802-A	0.614	8E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78719500	78719501	rs72736802	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72736802-A	0.595	8E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78719500	78719501	rs72736802	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs72736802-A	0.598	2E-6		0.048	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78719500	78719501	rs72736802	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72736802-A	0.597	3E-10		0.06	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78719831	78719832	rs72738704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.1		rs72738704-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1185	chr15	78719831	78719832	rs72738704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs72738704-C	0.39	4E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78719831	78719832	rs72738704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72738704-C	0.336	2E-12		0.015	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78719831	78719832	rs72738704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72738704-C	0.34	2E-13		0.075	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78720193	78720194	rs2656055	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2656055-A	0.803	4E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78720193	78720194	rs2656055	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2656055-A	0.802	5E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78720914	78720915	rs951984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs951984-A	0.267	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78720914	78720915	rs951984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs951984-A	0.27	4E-8		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78720922	78720923	rs951985	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs951985-T	0.649	4E-6		0.013	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78720922	78720923	rs951985	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs951985-T	0.7	4E-12		0.016	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78720922	78720923	rs951985	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs951985-T	0.698	2E-13		0.083	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78721396	78721397	rs2568497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2568497-T	0.812	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78721396	78721397	rs2568497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2568497-T	0.811	2E-7		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78722358	78722359	rs2568499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2568499-T	0.188	3E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78722358	78722359	rs2568499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2568499-T	0.189	2E-7		0.057	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78722518	78722519	rs2656056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2656056-T	0.209	3E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78722518	78722519	rs2656056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2656056-T	0.21	2E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78724255	78724256	rs11072763	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q25.1		rs11072763-A	0.222	3E-9		0.08	[-0.1--0.05] % decrease	Affymetrix [NR] (imputed)	N
1185	chr15	78724255	78724256	rs11072763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q25.1		rs11072763-G	0.776759	5E-12		0.0200123	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1185	chr15	78724255	78724256	rs11072763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q25.1		rs11072763-G	0.776769	9E-11		0.01735684	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1185	chr15	78724255	78724256	rs11072763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q25.1	NR	rs11072763-G	0.775908	8E-17		0.01932	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1185	chr15	78724468	78724469	rs1394371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1394371-T	0.723	3E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78724468	78724469	rs1394371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1394371-T	0.721	5E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78726271	78726272	rs2036529	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2036529-A	0.196	4E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78726271	78726272	rs2036529	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2036529-A	0.197	2E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78730251	78730252	rs2656070	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2656070-A	0.177	5E-7		0.059	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78730312	78730313	rs17483548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs17483548-A	0.386	3E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78730312	78730313	rs17483548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs17483548-A	0.332	3E-12		0.015	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78730312	78730313	rs17483548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs17483548-A	0.336	3E-13		0.074	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78731148	78731149	rs17405217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17405217-T	0.386	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78731148	78731149	rs17405217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17405217-T	0.333	2E-12		0.015	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78731148	78731149	rs17405217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17405217-T	0.336	2E-13		0.074	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78731807	78731808	rs924840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs924840-A	0.812	4E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78731807	78731808	rs924840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs924840-A	0.811	2E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78732753	78732754	rs2938671	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938671-A	0.197	4E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78732753	78732754	rs2938671	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938671-A	0.198	1E-7		0.059	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78732874	78732875	rs117028191	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	15q25.1	IREB2	rs117028191-G	NR	6E-6		0.6311726	[0.37-0.9] unit decrease	NR [> 6200000] (imputed)	N
1185	chr15	78733389	78733390	rs17483686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17483686-A	0.61	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78733389	78733390	rs17483686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483686-A	0.67	3E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78733389	78733390	rs17483686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483686-A	0.666	3E-12		0.064	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78733730	78733731	rs17483721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	IREB2	rs17483721-?	NR	1E-7		0.07077	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78733730	78733731	rs17483721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17483721-T	0.503	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78733730	78733731	rs17483721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483721-T	0.403	2E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78733730	78733731	rs17483721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483721-T	0.403	4E-12		0.064	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78735268	78735269	rs55983731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs55983731-T	0.39	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735268	78735269	rs55983731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs55983731-T	0.33	3E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735268	78735269	rs55983731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs55983731-T	0.334	3E-12		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735437	78735438	rs72738718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs72738718-C	0.388	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735437	78735438	rs72738718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738718-C	0.329	3E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735437	78735438	rs72738718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs72738718-C	0.372	4E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78735437	78735438	rs72738718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738718-C	0.333	3E-12		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78736592	78736593	rs2568488	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568488-A	0.812	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78736592	78736593	rs2568488	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568488-A	0.811	2E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78738369	78738370	rs2568490	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568490-T	0.2	5E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78738369	78738370	rs2568490	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568490-T	0.2	7E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78739470	78739471	rs2915695	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2915695-T	0.188	3E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78739470	78739471	rs2915695	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2915695-T	0.189	1E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78739762	78739763	rs2089162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2089162-A	0.61	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78739762	78739763	rs2089162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2089162-A	0.662	2E-12		0.015	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78739762	78739763	rs2089162	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2089162-A	0.66	1E-12		0.073	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740232	78740233	rs2568493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568493-A	0.8	8E-7		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78740687	78740688	rs2938670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2938670-T	0.609	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740687	78740688	rs2938670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938670-T	0.607	7E-10		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740687	78740688	rs2938670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2938670-T	0.599	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740687	78740688	rs2938670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938670-T	0.608	2E-12		0.062	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740931	78740932	rs2656052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2656052-A	0.609	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740931	78740932	rs2656052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656052-A	0.607	7E-10		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740931	78740932	rs2656052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2656052-A	0.599	2E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740931	78740932	rs2656052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656052-A	0.608	2E-12		0.062	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78740963	78740964	rs2568494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	IREB2	rs2568494-?	NR	7E-8		0.07201	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78740963	78740964	rs2568494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2568494-A	0.496	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78740963	78740964	rs2568494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568494-A	0.542	1E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78740963	78740964	rs2568494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2568494-A	0.504	2E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78740963	78740964	rs2568494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568494-A	0.545	2E-12		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78741383	78741384	rs2656074	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656074-T	0.2	5E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741383	78741384	rs2656074	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656074-T	0.2	7E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741617	78741618	rs7181486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs7181486-T	0.61	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741617	78741618	rs7181486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs7181486-T	0.669	2E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741617	78741618	rs7181486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs7181486-T	0.627	4E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741617	78741618	rs7181486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs7181486-T	0.666	3E-12		0.064	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78741617	78741618	rs7181486	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Pulmonary artery enlargement in chronic obstructive pulmonary disease	1,006 European ancestry cases, 260 African American cases, 3,281 European ancestry controls, 494 African American controls	NA	15q25.1	IREB2, AGPHD1	rs7181486-C	0.39	2E-8		1.32	[1.20-1.45]	Illumina [NR] (imputed)	N
1185	chr15	78742275	78742276	rs2656073	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656073-T	0.2	5E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78742275	78742276	rs2656073	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656073-T	0.2	6E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78742375	78742376	rs17483929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	IREB2	rs17483929-?	NR	1E-7		0.07044	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78742375	78742376	rs17483929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17483929-A	0.497	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78742375	78742376	rs17483929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483929-A	0.597	2E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78742375	78742376	rs17483929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17483929-A	0.527	5E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78742375	78742376	rs17483929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17483929-A	0.596	3E-12		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78742578	78742579	rs56219465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs56219465-A	0.61	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78742578	78742579	rs56219465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs56219465-A	0.669	2E-10		0.012	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78742578	78742579	rs56219465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs56219465-A	0.626	4E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78742578	78742579	rs56219465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs56219465-A	0.666	3E-12		0.064	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78743028	78743029	rs2958719	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2958719-A	0.8	5E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78743028	78743029	rs2958719	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2958719-A	0.8	6E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78744291	78744292	rs2656072	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656072-A	0.201	6E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78745342	78745343	rs2656071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656071-A	0.812	2E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78745342	78745343	rs2656071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656071-A	0.811	2E-7		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78745706	78745707	rs2656069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656069-T	0.648	7E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78750548	78750549	rs2656065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	IREB2	rs2656065-?	NR	1E-7		0.07111	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78750548	78750549	rs2656065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2656065-A	0.496	3E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78750548	78750549	rs2656065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656065-A	0.538	4E-10		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78750548	78750549	rs2656065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2656065-A	0.504	7E-7		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78750548	78750549	rs2656065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2656065-A	0.54	1E-12		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78751960	78751961	rs11637656	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs11637656-T	0.546	5E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78751960	78751961	rs11637656	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs11637656-T	0.55	6E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78752113	78752114	rs2568485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568485-T	0.812	4E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78752113	78752114	rs2568485	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568485-T	0.811	2E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78752187	78752188	rs72738732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs72738732-C	0.614	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78752187	78752188	rs72738732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738732-C	0.666	2E-12		0.015	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78752187	78752188	rs72738732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738732-C	0.663	2E-13		0.074	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78752342	78752343	rs2568483	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2568483-A	0.799	9E-7		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78753999	78754000	rs1964678	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1964678-A	0.458	4E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78753999	78754000	rs1964678	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1964678-A	0.453	4E-9		0.053	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78754101	78754102	rs2009746	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	15q25.1		rs2009746-A	NR	8E-10		0.012	[0.0081-0.0159] unit decrease	NR [7831927]	N
1185	chr15	78754101	78754102	rs2009746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2009746-A	0.609	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78754101	78754102	rs2009746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2009746-A	0.672	1E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78754101	78754102	rs2009746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs2009746-A	0.627	1E-6		0.046	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78754101	78754102	rs2009746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2009746-A	0.668	2E-14		0.071	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78757912	78757913	rs2938674	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938674-A	0.2	5E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78757912	78757913	rs2938674	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2938674-A	0.2	5E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78759347	78759348	rs958025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs958025-T	0.189	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78759347	78759348	rs958025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs958025-T	0.19	2E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78760917	78760918	rs4887057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4887057-A	0.425	4E-7		0.009	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78760917	78760918	rs4887057	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4887057-A	0.421	4E-8		0.049	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78761413	78761414	rs17484235	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17484235-C	0.614	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78761413	78761414	rs17484235	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17484235-C	0.666	2E-12		0.015	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78761413	78761414	rs17484235	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17484235-C	0.663	2E-13		0.074	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78762312	78762313	rs28480606	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs28480606-A	0.8	4E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78763616	78763617	rs7174190	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs7174190-T	0.199	9E-7		0.053	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78765121	78765122	rs72738736	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	15q25.1	NR	rs72738736-G	0.672115	1E-23		0.0239366	[0.019-0.029] unit decrease	Affymetrix [11535925] (imputed)	N
1185	chr15	78765121	78765122	rs72738736	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs72738736-T	0.391	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78765121	78765122	rs72738736	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738736-T	0.332	3E-10		0.012	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78765121	78765122	rs72738736	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs72738736-T	0.335	3E-12		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78765289	78765290	rs12593229	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12593229-T	0.456	7E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78765289	78765290	rs12593229	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12593229-T	0.451	7E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78766193	78766194	rs4299116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4299116-A	0.546	6E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78766193	78766194	rs4299116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4299116-A	0.548	6E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78766249	78766250	rs1504550	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs1504550-A	0.613	2E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78766249	78766250	rs1504550	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1504550-A	0.666	8E-13		0.015	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78766249	78766250	rs1504550	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1504550-A	0.663	1E-13		0.075	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78766628	78766629	rs1504549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1504549-T	0.544	7E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78766628	78766629	rs1504549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1504549-T	0.549	7E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78767345	78767346	rs12592111	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	15q25.1	NR	rs12592111-?	NR	5E-6		0.03526	[0.02-0.05] unit increase	Affymetrix [9658292] (imputed)	N
1185	chr15	78767345	78767346	rs12592111	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12592111-A	0.529	1E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78767345	78767346	rs12592111	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12592111-A	0.535	8E-10		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78767849	78767850	rs12910910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12910910-T	0.545	6E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78767849	78767850	rs12910910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12910910-T	0.55	1E-8		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78768166	78768167	rs28602670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs28602670-C	0.81	5E-7		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78768870	78768871	rs8043227	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8043227-C	0.456	6E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78768870	78768871	rs8043227	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8043227-C	0.451	7E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78769129	78769130	rs12916801	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12916801-A	0.459	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78769129	78769130	rs12916801	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12916801-A	0.452	6E-9		0.053	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78771545	78771546	rs11072766	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs11072766-T	0.2	8E-7		0.053	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78772675	78772676	rs17484524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs17484524-A	0.613	1E-6		0.012	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78772675	78772676	rs17484524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17484524-A	0.666	5E-13		0.015	unit increase	Illumina [NR] (imputed)	N
1185	chr15	78772675	78772676	rs17484524	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs17484524-A	0.663	1E-13		0.076	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78772805	78772806	rs35031105	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs35031105-T	0.201	7E-7		0.054	NR unit increase	Illumina [NR] (imputed)	N
1185	chr15	78774270	78774271	rs8042238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8042238-T	0.544	8E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78774270	78774271	rs8042238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8042238-T	0.549	4E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1185	chr15	78774270	78774271	rs8042238	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,777 European ancestry cases, 3,520 European ancestry smoker controls	NA	15q25.1	IREB2	rs8042238-T	0.64	5E-8		1.26	[1.16-1.37]	Illumina [NR] (imputed)	N
1186	chr15	78774373	78774374	rs8042260	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8042260-A	0.456	9E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78774373	78774374	rs8042260	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs8042260-A	0.451	4E-9		0.053	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78774675	78774676	rs10851906	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs10851906-A	0.812	4E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78774675	78774676	rs10851906	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs10851906-A	0.811	2E-7		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78776455	78776456	rs16969894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs16969894-T	0.189	3E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78776455	78776456	rs16969894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs16969894-T	0.19	2E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78778952	78778953	rs12903285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12903285-A	0.47	6E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78778952	78778953	rs12903285	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12903285-A	0.465	1E-10		0.06	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78778971	78778972	rs12903295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12903295-A	0.441	4E-9		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78778971	78778972	rs12903295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12903295-A	0.436	8E-11		0.058	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78779383	78779384	rs12904234	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12904234-T	0.562	4E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78779383	78779384	rs12904234	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12904234-T	0.566	9E-11		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78779509	78779510	rs36146269	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs36146269-A	0.542	7E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78779509	78779510	rs36146269	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs36146269-A	0.548	5E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78779800	78779801	rs12101809	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12101809-T	0.2	9E-7		0.053	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78781686	78781687	rs2036533	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2036533-A	0.188	4E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78781686	78781687	rs2036533	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs2036533-A	0.189	2E-7		0.058	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78782094	78782095	rs4887059	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4887059-T	0.538	9E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78782094	78782095	rs4887059	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs4887059-T	0.546	5E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78783276	78783277	rs11858836	29767774	Lutz SM	2018-05-15	Nicotine Tob Res	Common and rare variants genetic association analysis of cigarettes per day among ever smokers in COPD cases and controls.	Current cigarettes per day in chronic obstructive pulmonary disease	2,812 European ancestry cases, 3,846 European ancestry controls, 821 African American cases, 2,459 African American controls	2,627 cases, 986 controls	15q25.1	IREB2	rs11858836-A	0.36	1E-10		0.1	[NR] unit increase	Illumina [NR]	N
1186	chr15	78783276	78783277	rs11858836	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	IREB2	rs11858836-A	0.387	2E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78783276	78783277	rs11858836	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs11858836-A	0.333	1E-12		0.015	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78783276	78783277	rs11858836	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs11858836-A	0.336	3E-13		0.074	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78783276	78783277	rs11858836	22080838	Cho MH	2011-11-11	Hum Mol Genet	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 cases, 1,876 sibling controls	15q25.1	CHRNA5, IREB2, CHRNA3	rs11858836-?	NR	1E-6		1.29	[1.13-1.47]	Illumina [797983]	N
1186	chr15	78783682	78783683	rs28511883	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs28511883-T	0.2	9E-7		0.053	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78789222	78789223	rs965604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs965604-A	0.535	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78789222	78789223	rs965604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs965604-A	0.53	9E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78789487	78789488	rs13180	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs13180-T	0.458	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78789487	78789488	rs13180	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs13180-T	0.452	8E-9		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78789487	78789488	rs13180	20173748	Cho MH	2010-02-21	Nat Genet	Variants in FAM13A are associated with chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	2,940 European ancestry cases, 1,380 European ancestry controls	502 European ancestry cases, 504 European ancestry controls, 1,110 cases, 2,698 controls	15q25.1	CHRNA5, IREB2, CHRNA3	rs13180-?	0.36	2E-8		1.3	[1.18-1.43]	Illumina [499578]	N
1186	chr15	78792397	78792398	rs12899351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12899351-T	0.457	1E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78792397	78792398	rs12899351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs12899351-T	0.45	7E-9		0.052	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78792438	78792439	rs7174348	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs7174348-A	0.181	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78792438	78792439	rs7174348	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs7174348-A	0.182	8E-8		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78792526	78792527	rs1062980	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1062980-T	0.365	7E-8		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78792526	78792527	rs1062980	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	IREB2	rs1062980-T	0.365	1E-9		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78793920	78793921	rs12594711	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12594711-T	0.539	2E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78793920	78793921	rs12594711	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12594711-T	0.543	1E-8		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78796103	78796104	rs4362358	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4362358-T	0.543	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78796103	78796104	rs4362358	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4362358-T	0.548	6E-9		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78796281	78796282	rs5019044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs5019044-A	0.161	5E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78796731	78796732	rs74925218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q25.1		rs74925218-T	NR	2E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1186	chr15	78796731	78796732	rs74925218	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs74925218-T	0.205	3E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78796731	78796732	rs74925218	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs74925218-T	0.205	4E-7		0.055	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78797462	78797463	rs9672608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs9672608-A	0.202	3E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78797462	78797463	rs9672608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs9672608-A	0.202	4E-7		0.055	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78798938	78798939	rs57338032	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q25.1	NR	rs57338032-G	NR	6E-7		0.1583	[0.096-0.22] SD units decrease	NR [10700000] (imputed)	N
1186	chr15	78801393	78801394	rs11852372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs11852372-A	0.62	3E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78801393	78801394	rs11852372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs11852372-A	0.689	1E-13		0.015	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78801393	78801394	rs11852372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs11852372-A	0.685	3E-13		0.072	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78801393	78801394	rs11852372	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	AGPHD1	rs11852372-A	0.65	2E-10	(Panlobular)	0.003	[0.0018-0.0042] unit decrease	Illumina [6942916] (imputed)	N
1186	chr15	78801393	78801394	rs11852372	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	AGPHD1	rs11852372-A	0.65	1E-7	(Panlobular, EA)	0.003	[0.0018-0.0042] unit decrease	Illumina [6942916] (imputed)	N
1186	chr15	78802585	78802586	rs9788682	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs9788682-A	0.185	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78802585	78802586	rs9788682	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs9788682-A	0.186	7E-9		0.066	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	15q25.1		rs9788721-T	0.674993475	9E-12		0.17372976	[0.12-0.22] unit decrease	Illumina [13427899] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	15q25.1		rs9788721-T	NR	4E-38		0.1548	[0.13-0.18] unit decrease	Affymetrix, Illumina [25843162] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	15q25.1	NR	rs9788721-C	0.339372	3E-8		0.011425	[0.0074-0.0155] unit increase	NR [NR]	N
1186	chr15	78802868	78802869	rs9788721	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Cotinine levels in smokers with chronic obstructive pulmonary disease	4,024 European ancestry individuals	NA	15q25.1	CHRNA3, CHRNA5	rs9788721-?	NR	3E-7		0.12	[0.081-0.159] unit decrease	Illumina [7807992] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	15q25.1	AGPHD1	rs9788721-T	0.62	7E-12	(ratio950)	0.09	NR unit decrease	Illumina [at least 10657975] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	15q25.1	AGPHD1	rs9788721-T	0.62	5E-10	(diff950)	0.08	NR unit decrease	Illumina [at least 10657975] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs9788721-T	0.595	7E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs9788721-T	0.621	2E-14		0.014	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs9788721-T	0.62	2E-14		0.068	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	15q25.1	AGPHD1	rs9788721-T	NR	6E-7	(%LAA-950, Cases)	0.1	unit decrease	Illumina [7600000] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	15q25.1	AGPHD1	rs9788721-T	NR	1E-6	(Perc15, All)	1.7	[1.01-2.39] unit increase	Illumina [7600000] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	AGPHD1	rs9788721-T	0.62	2E-13	(Severe Centrilobular)	0.007	[0.0050-0.0090] unit decrease	Illumina [6942916] (imputed)	N
1186	chr15	78802868	78802869	rs9788721	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	AGPHD1	rs9788721-T	0.62	1E-12	(Severe Centrilobular, EA)	0.007	[0.0050-0.0090] unit decrease	Illumina [6942916] (imputed)	N
1186	chr15	78803056	78803057	rs7164594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7164594-T	0.287	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78803056	78803057	rs7164594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7164594-T	0.284	1E-6		0.05	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	15q25.1	PSMA4	rs8034191-T	0.676	3E-8		0.117	[0.076-0.158] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	15q25.1	AGPHD1	rs8034191-T	NR	1E-70		0.06	[0.053-0.067] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	15q25.1	AGPHD1	rs8034191-C	0.341	1E-139		0.0956	[0.088-0.103] unit increase	Illumina [~ 250000] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	15q25.1	AGPHD1	rs8034191-C	0.338	6E-118		0.0819	[0.075-0.089] unit increase	Illumina [~ 250000] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	29758381	Marees AT	2018-04-25	Drug Alcohol Depend	Exploring the role of low-frequency and rare exonic variants in alcohol and tobacco use.	ICD10 Z72.0: Tobacco use	7,432 individuals	1,927 cases, 25,141 controls	15q25.1	AGPHD1	rs8034191-?		6E-7				Illumina [247850]	N
1186	chr15	78806022	78806023	rs8034191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	AGPHD1	rs8034191-?	NR	2E-10		0.01688	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	AGPHD1	rs8034191-?	NR	3E-9		0.07893	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs8034191-T	0.403	3E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8034191-T	0.331	6E-14		0.014	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8034191-T	0.335	1E-13		0.07	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78806022	78806023	rs8034191	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	15q25.1	CHRNA3	rs8034191-?	NR	3E-26		1.29	[1.23-1.35]	Illumina [511919]	N
1186	chr15	78806022	78806023	rs8034191	19300482	Pillai SG	2009-03-20	PLoS Genet	A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci.	Chronic obstructive pulmonary disease	823 cases, 810 controls	1,891 European ancestry individuals from 606 families, 389 European ancestry cases, 472 European ancestry controls, 949 individuals from 127 families	15q25.1	CHRNA5, CHRNA3, CHRNA4, LOC123688	rs8034191-C	0.33	1E-10		1.4	[1.18-1.67]	Illumina [493609]	N
1186	chr15	78806022	78806023	rs8034191	18780872	Liu P	2008-09-17	J Natl Cancer Inst	Familial aggregation of common sequence variants on 15q24-25.1 in lung cancer.	Lung cancer	194 European ancestry cases, 219 European ancestry controls	3,878 cases, 4,831 controls	15q25.1	CHRNA5, PSMA4, CHRNA3, LOC123688, CHRNB4	rs8034191-G	NR	1E-8		1.38	[1.17-1.64]	Affymetrix [up to 722376]	N
1186	chr15	78806022	78806023	rs8034191	18385738	Hung RJ	2008-04-03	Nature	A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25.	Lung cancer	1,926 European ance other ancestry cases, 2,522 European and other ancestry controls	332 European ancestry cases, 462 European ancestry controls, 2,181 European and other ancestry cases, 4,290 European and other ancestry controls	15q25.1	CHRNA5, CHRNA3, PSMA4, LOC123688, CHRNB4	rs8034191-C	0.34	5E-20		1.3	[1.23-1.37]	Illumina [310023]	N
1186	chr15	78806022	78806023	rs8034191	18385676	Amos CI	2008-04-03	Nat Genet	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	15q25.1	CHRNA5, CHRNA3, PSMA4, LOC123688	rs8034191-G	NR	3E-18		1.3	[1.15-1.47]	Illumina [317498]	N
1186	chr15	78807871	78807872	rs28437878	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.1	AGPHD1	rs28437878-C	NR	2E-10	(EA)	1.087	[1.06-1.11]	Illumina [6627481] (imputed)	N
1186	chr15	78807871	78807872	rs28437878	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs28437878-T	0.204	5E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78807871	78807872	rs28437878	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs28437878-T	0.204	5E-9		0.063	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78812097	78812098	rs12438181	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs12438181-A	0.218	5E-10	(Conditioned on chr15:78911181, chr15:78906177, chr15:78849779, chr15:78908565, chr15:78814046)	0.018525843	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1186	chr15	78812097	78812098	rs12438181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12438181-A	0.212	1E-6		0.052	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78812328	78812329	rs12441426	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12441426-T	0.793	5E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78812328	78812329	rs12441426	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12441426-T	0.793	3E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78813154	78813155	rs34684276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs34684276-A	0.345	2E-6		0.014	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78813154	78813155	rs34684276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs34684276-A	0.291	8E-13		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78813154	78813155	rs34684276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs34684276-A	0.295	2E-11		0.077	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78813154	78813155	rs34684276	26440539	Hancock DB	2015-10-06	Transl Psychiatry	Genome-wide meta-analysis reveals common splice site acceptor variant in CHRNA4 associated with nicotine dependence.	Nicotine dependence	9,137 European ancestry mild cases, 4,881 European ancestry moderate cases, 3,056 European ancestry severe cases	2,662 European ancestry mild cases, 3,044 European ancestry moderate cases, 1,763 European ancestry severe cases	15q25.1	CHRNA5, CHRNA3, CHRNB4	rs34684276-A	0.35	4E-17		0.067	[NR] unit increase	Illumina [8548225] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	15q25.1	PSMA4	rs10519203-A	0.6291	1E-9		0.1203	[0.081-0.159] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs10519203-A	0.655	3E-286		0.09361804	[0.089-0.099] unit decrease	NR [~ 10000000] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q25.1	NR	rs10519203-A	0.655	1E-262		0.0798364	[0.075-0.084] unit decrease	NR [9732723] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	27029810	Joshi PK	2016-03-31	Nat Commun	Variants near CHRNA3/5 and APOE have age- and sex-related effects on human lifespan.	Mortality	138,536 British ancestry mothers, 133,545 British ancestry fathers	24,168 European ancestry individuals, 681 African ancestry individuals, 962 Afro-Caribbean individuals, 1,613 South Asian ancestry individuals, 338 Chinese ancestry individuals	15q25.1	CHRNA3/5	rs10519203-G	NR	2E-17		1.06		Affymetrix [73355667] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs10519203-A	0.595	5E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs10519203-A	0.638	2E-12		0.013	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs10519203-A	0.637	6E-12		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78814045	78814046	rs10519203	25551457	Baumert J	2014-12-31	PLoS One	No evidence for genome-wide interactions on plasma fibrinogen by smoking, alcohol consumption and body mass index: results from meta-analyses of 80,607 subjects.	Fibrinogen levels (smoking status, alcohol consumption or body mass index interaction)	up to 80,607 European ancestry individuals	NA	15q25.1	LOC123688	rs10519203-A	0.648	6E-8	(Smoking status)	0.048	[0.030-0.066] g/L decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1186	chr15	78814388	78814389	rs7181245	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7181245-T	0.223	2E-7		0.055	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78814566	78814567	rs7181447	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7181447-A	0.776	1E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78814680	78814681	rs7163730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7163730-A	0.351	4E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78814680	78814681	rs7163730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7163730-A	0.35	3E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78815297	78815298	rs61204066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs61204066-A	0.206	5E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78815297	78815298	rs61204066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs61204066-A	0.206	3E-9		0.063	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78816056	78816057	rs8031948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs8031948-T	0.403	5E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78816056	78816057	rs8031948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8031948-T	0.333	3E-15		0.015	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78816056	78816057	rs8031948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs8031948-T	0.384	2E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78816056	78816057	rs8031948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8031948-T	0.336	3E-15		0.075	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78816056	78816057	rs8031948	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q25.1	AGPHD1	rs8031948-T	0.35	3E-9	(Smokers)	1.22		Affymetrix, Illumina [up to 2500000] (imputed)	N
1186	chr15	78817446	78817447	rs4461039	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs4461039-A	0.777	2E-7		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	15q25.1		rs8042849-C	NR	8E-10		1.2004	NR	Affymetrix [7846216] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	15q25.1	CHRNA3, CHRNA5	rs8042849-T	0.64	1E-24				NR [7320282]	N
1186	chr15	78817928	78817929	rs8042849	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	15q25.1		rs8042849-C	0.342	2E-39		0.028	[0.024-0.032] unit increase	Affymetrix [up to 90000000] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	15q25.1	CHRNA3, CHRNA5	rs8042849-T	0.65	2E-26		0.4368	[0.36-0.52] years increase	NR [up to 9000000] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q25.1		rs8042849-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	15q25.1	CHRNA3, CHRNA5	rs8042849-C	0.356	4E-14	(EA)	0.4	years decrease	Affymetrix, Illumina [at least 13643373] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs8042849-T	0.534	5E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8042849-T	0.561	3E-15		0.015	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78817928	78817929	rs8042849	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs8042849-T	0.56	4E-15		0.074	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78821015	78821016	rs12441354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12441354-A	0.22	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78821015	78821016	rs12441354	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12441354-A	0.219	7E-9		0.061	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78822659	78822660	rs7169584	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7169584-A	0.794	6E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78822659	78822660	rs7169584	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs7169584-A	0.794	4E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78824923	78824924	rs12438659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12438659-A	0.223	3E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78824923	78824924	rs12438659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12438659-A	0.222	2E-8		0.059	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78825916	78825917	rs3885951	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	15q25.1	HYKK	rs3885951-G	0.096	5E-8		1.09	[1.06 -1.13]	Illumina [at least 109036]	N
1186	chr15	78825916	78825917	rs3885951	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.1	AGPHD1	rs3885951-A	0.920275	1E-84	(5-hydroxylysine)	0.789	[0.71-0.87] unit decrease	Illumina [13039987] (imputed)	N
1186	chr15	78826179	78826180	rs931794	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	15q25.1		rs931794-G	0.34	4E-10		1.14	[1.09-1.19]	Illumina [NR] (imputed)	N
1186	chr15	78826179	78826180	rs931794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pneumothorax	1,747 European ancestry cases, 475,987 European ancestry controls, 692 East Asian ancestry cases, 176,298 East Asian ancestry controls	NA	15q25.1		rs931794-A	NR	4E-8		0.1662	[0.11-0.23] unit decrease	Affymetrix, Illumina [25844290] (imputed)	N
1186	chr15	78826179	78826180	rs931794	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	15q25.1	CHRNA3/5	rs931794-G	0.35	3E-9		0.01581	[0.011-0.021] unit decrease	Illumina [541614]	N
1186	chr15	78826179	78826180	rs931794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	AGPHD1	rs931794-?	NR	8E-10		0.01635	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78826179	78826180	rs931794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	AGPHD1	rs931794-?	NR	4E-9		0.07793	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78826179	78826180	rs931794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs931794-A	0.497	7E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78826179	78826180	rs931794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs931794-A	0.407	4E-11		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78826179	78826180	rs931794	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs931794-A	0.407	2E-11		0.061	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78826947	78826948	rs2036534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs2036534-T	0.646	7E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78826947	78826948	rs2036534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs2036534-T	0.646	6E-9		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78827630	78827631	rs28675338	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	15q25.1	AGPHD1	rs28675338-C	0.89	1E-7		0.192	unit increase	Illumina [~ 6300000] (imputed)	N
1186	chr15	78828082	78828083	rs111650215	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	15q25.1	NR	rs111650215-A	NR	6E-8		5.43	z score decrease	NR [9015039] (imputed)	N
1186	chr15	78828085	78828086	rs72738786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	AGPHD1	rs72738786-T	0.402	5E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78828085	78828086	rs72738786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs72738786-T	0.334	4E-14		0.015	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78828085	78828086	rs72738786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs72738786-T	0.336	8E-14		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78829090	78829091	rs12439240	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12439240-T	0.777	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78829090	78829091	rs12439240	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	AGPHD1	rs12439240-T	0.778	9E-9		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78831623	78831624	rs34664138	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34664138-T	0.792	5E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78831623	78831624	rs34664138	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34664138-T	0.792	4E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78831667	78831668	rs34138960	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34138960-A	0.792	5E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78831667	78831668	rs34138960	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34138960-A	0.792	4E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78831825	78831826	rs35212593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs35212593-A	0.203	3E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78831825	78831826	rs35212593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs35212593-A	0.203	3E-9		0.064	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78832348	78832349	rs56117933	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs56117933-T	0.762	1E-6		0.015	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78832348	78832349	rs56117933	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs56117933-T	0.792	5E-11		0.018	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78832348	78832349	rs56117933	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs56117933-T	0.79	3E-10		0.082	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78832587	78832588	rs3813572	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.1	PSMA4	rs3813572-C	0.255222	7E-66	(5-hydroxylysine)	0.441	[0.39-0.49] unit increase	Illumina [13039987] (imputed)	N
1186	chr15	78832831	78832832	rs3813570	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs3813570-T	0.779	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78832831	78832832	rs3813570	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs3813570-T	0.78	1E-8		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78833035	78833036	rs57064725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs57064725-A	0.273	6E-7		0.052	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78833222	78833223	rs12901682	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q25.1	PSMA4	rs12901682-?	0.017	4E-8	(CSJC , EA, RF-)	135.02	[NR] unit decrease	Illumina [534053]	N
1186	chr15	78833449	78833450	rs59133824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs59133824-A	0.204	3E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78833449	78833450	rs59133824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs59133824-A	0.204	3E-9		0.064	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78833452	78833453	rs59683676	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs59683676-T	0.792	5E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78833452	78833453	rs59683676	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs59683676-T	0.792	4E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78836287	78836288	rs28438420	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs28438420-T	0.554	1E-12	(Conditioned on chr15:78812098, chr15:78911181, chr15:78906177, chr15:78849779, chr15:78908565, chr15:78814046)	0.017560912	[0.013-0.022] unit increase	NR [~ 10000000] (imputed)	N
1186	chr15	78837672	78837673	rs28498264	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs28498264-T	0.213	3E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78837672	78837673	rs28498264	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs28498264-T	0.212	5E-11		0.071	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78840566	78840567	rs113352275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs113352275-T	0.185	3E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78840566	78840567	rs113352275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	PSMA4	rs113352275-T	0.185	1E-9		0.07	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78845109	78845110	rs905739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs905739-A	0.781	3E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78845109	78845110	rs905739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs905739-A	0.781	7E-11		0.069	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78849033	78849034	rs58365910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs58365910-T	0.595	8E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78849033	78849034	rs58365910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs58365910-T	0.655	1E-15		0.015	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78849033	78849034	rs58365910	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs58365910-T	0.652	7E-15		0.072	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	15q25.1	PSMA4, CHRNA5	rs72740955-C		9E-10		0.97	[NR]	Affymetrix [up to 79000000] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking behaviour (cigarettes smoked per day)	4,772 European ancestry individuals	NA	15q25.1		rs72740955-T	0.349	7E-12		0.142	[0.1-0.18] increase	Illumina [9622178] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking behaviour (cigarette pack-years)	4,676 European ancestry individuals	NA	15q25.1		rs72740955-T	0.35	8E-10		0.106	[0.073-0.139] unit increase	Illumina [9622178] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	15q25.1	NR	rs72740955-T	0.335	5E-48		0.0237025	[0.021-0.027] unit increase	NR [9732723] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs72740955-T	0.337	2E-34	(Conditioned on chr15:78908565, chr15:78814046)	0.031752326	[0.027-0.037] unit increase	NR [~ 10000000] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs72740955-T	0.402	7E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72740955-T	0.335	7E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78849778	78849779	rs72740955	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72740955-T	0.338	1E-14		0.075	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78849917	78849918	rs7173514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs7173514-T	0.234	1E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78849917	78849918	rs7173514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs7173514-T	0.233	1E-10		0.068	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78850557	78850558	rs28395178	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs28395178-A	0.191	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78850557	78850558	rs28395178	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs28395178-A	0.191	1E-8		0.066	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine levels in current smokers	5,185 European ancestry individuals	NA	15q25.1		rs2036527-A	0.349	5E-27		0.223	[0.18-0.26] unit increase	Illumina [9622178] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine and 3'-hydroxycotinine levels in current smokers	5,185 European ancestry individuals	NA	15q25.1		rs2036527-A	0.349	3E-28		0.224	[0.18-0.26] unit increase	Illumina [9622178] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs2036527-?	NR	4E-10		0.01665	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs2036527-?	NR	2E-9		0.08021	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs2036527-A	0.504	7E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2036527-A	0.601	7E-16		0.015	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2036527-A	0.6	9E-15		0.071	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	22832964	David SP	2012-05-22	Transl Psychiatry	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NA	15q25.1	CHRNA5	rs2036527-A	0.22	2E-8	(CPD)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [~ 2900000] (imputed)	N
1186	chr15	78851614	78851615	rs2036527	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	15q25.1	CHRNA5	rs2036527-G	NR	7E-7	(FEV1)	0.026	[0.016-0.036] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1186	chr15	78857895	78857896	rs503464	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	15q25.1		rs503464-A	0.527794497	8E-11		0.8465932	[0.805172475-0.890144701]	Illumina [8919992] (imputed)	N
1186	chr15	78857895	78857896	rs503464	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs503464-A	0.236	6E-9		0.013	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857895	78857896	rs503464	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs503464-A	0.236	1E-10		0.068	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857895	78857896	rs503464	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	15q25.1	CHRNA5	rs503464-A	NR	3E-7	(Perc15, Cases)	3.2	[2.02-4.38] unit decrease	Illumina [7600000] (imputed)	N
1186	chr15	78857938	78857939	rs55853698	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	15q25.1	CHRNA5	rs55853698-G	0.359915817	5E-21		1.3336763	[1.256072968-1.416074239]	Illumina [10439017] (imputed)	N
1186	chr15	78857938	78857939	rs55853698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs55853698-T	0.597	8E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857938	78857939	rs55853698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs55853698-T	0.658	1E-14		0.016	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857938	78857939	rs55853698	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs55853698-T	0.654	7E-14		0.075	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q25.1	NR	rs55781567-G	0.36	2E-29		1.19	[1.15-1.23]	Illumina [8468885] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Squamous cell lung carcinoma	8,350 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q25.1	NR	rs55781567-G	NR	2E-23		0.78	[0.74-0.82]	NR [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q25.1	NR	rs55781567-G	NR	8E-44		0.79	[0.76-0.81]	NR [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	15q25.1	NR	rs55781567-G	NR	9E-26		0.8	[0.77-0.84]	NR [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	15q25.1	CHRNA5	rs55781567-C	0.665123	3E-9		1.0278076	NR	Affymetrix [~ 9600000] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q25.1	CHRNA5	rs55781567-C	0.6548	1E-8		0.023147	[0.015-0.031] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	15q25.1	CHRNA5	rs55781567-G	0.32	8E-44		1.27	[1.23-1.31]	Illumina [~ 11000000] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q25.1	CHRNA5	rs55781567-G	0.386053854	2E-78		1.3320138	[1.292694434-1.372529125]	Illumina [10439017] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q25.1	CHRNA5	rs55781567-G	0.366673898	3E-103		1.2974213	[1.267092551-1.328476032]	Illumina [10439017] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q25.1	CHRNA5	rs55781567-G	0.358612089	3E-48		1.2763544	[1.235221079-1.318857475]	Illumina [10439017] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Lung cancer	1,737 African American cases, 3,602 African American controls	866 African American cases, 796  African American controls	15q25.1	PSMA4, CHRNA5	rs55781567-?	NR	1E-9		1.3169	[1.2049-1.4394]	Illumina [1024001]	N
1186	chr15	78857985	78857986	rs55781567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs55781567-C	0.597	8E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs55781567-C	0.651	6E-15		0.015	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs55781567-C	0.61	3E-6		0.045	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78857985	78857986	rs55781567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs55781567-C	0.649	7E-15		0.071	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78858399	78858400	rs684513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs684513-C	0.806	1E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78858399	78858400	rs684513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs684513-C	0.806	2E-8		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78859605	78859610	rs577626090	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	15q25.1	CHRNA5	rs577626090-D	0.37	1E-63		1.29	[1.25-1.33]	Illumina [484196]	N
1186	chr15	78859609	78859610	rs190065944	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q25.1	CHRNA3, CHRNA5, CHRNB4, HYKK, IREB2, PSMA4	rs190065944-A		5E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [NR]	N
1186	chr15	78859609	78859610	rs190065944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs190065944-A	0.304	1E-6		0.017	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78859609	78859610	rs190065944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs190065944-A	0.268	1E-14		0.02	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78859609	78859610	rs190065944	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs190065944-A	0.27	4E-12		0.089	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78861917	78861918	rs1711731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs1711731-A	0.192	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78861917	78861918	rs1711731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs1711731-A	0.192	3E-8		0.064	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78862063	78862064	rs11633958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs11633958-T	0.396	7E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862063	78862064	rs11633958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs11633958-T	0.34	1E-14		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862063	78862064	rs11633958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs11633958-T	0.343	3E-14		0.077	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862063	78862064	rs11633958	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q25.1	CHRintergenic5	rs11633958-T	NR	7E-7				Illumina [up to 11995908] (imputed)	N
1186	chr15	78862452	78862453	rs7172118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs7172118-A	0.399	6E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862452	78862453	rs7172118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs7172118-A	0.333	6E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862452	78862453	rs7172118	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs7172118-A	0.336	2E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78862761	78862762	rs664172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs664172-A	0.2	5E-8		0.013	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78862761	78862762	rs664172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs664172-A	0.199	2E-9		0.069	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78863471	78863472	rs667282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs667282-T	0.37	3E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78863471	78863472	rs667282	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs667282-T	0.368	9E-10		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78863471	78863472	rs667282	22832964	David SP	2012-05-22	Transl Psychiatry	Genome-wide meta-analyses of smoking behaviors in African Americans.	Smoking behavior	Up to 32,389 African American individuals	NA	15q25.1	CHRNA5	rs667282-C	0.29	2E-7	(CPD)	0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [~ 2900000] (imputed)	N
1186	chr15	78865196	78865197	rs17486195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs17486195-A	0.601	6E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78865196	78865197	rs17486195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs17486195-A	0.668	1E-16		0.016	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78865196	78865197	rs17486195	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs17486195-A	0.665	2E-15		0.077	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78866444	78866445	rs140330585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs140330585-A	0.4	7E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78866444	78866445	rs140330585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs140330585-A	0.335	5E-17		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78866444	78866445	rs140330585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs140330585-A	0.337	1E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78866722	78866723	rs61655864	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	15q25.1	CHRNA5	rs61655864-D	0.29	6E-37		0.81	[0.79-0.84]	Illumina [484196]	N
1186	chr15	78867481	78867482	rs17486278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	15q25.1		rs17486278-C	NR	3E-17		0.1456	[0.11-0.18] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	15q25.1	CHRNA5	rs17486278-C	NR	9E-10	(EA)	0.12	0.08-0.16 unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	15q25.1	CHRNA5	rs17486278-C	0.35	2E-28		1.18	[1.15,1.22]	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs17486278-A	0.601	7E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs17486278-C	0.709	3E-6	(AA)	0.016	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs17486278-A	0.65	4E-20		0.017	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs17486278-A	0.61	2E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs17486278-A	0.647	3E-18		0.079	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Pulmonary artery enlargement and chronic obstructive pulmonary disease	1,006 European ancestry cases, 260 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	15q25.1	CHRNA5, PSMA4, IREB2, AGPHD1, CHRNA3	rs17486278-C	0.37	7E-10		1.42	[1.27-1.59]	Illumina [NR] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	CHRNA5	rs17486278-A	0.63	8E-13	(normal)	0.03	[0.020-0.040] unit increase	Illumina [6942916] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	15q25.1	CHRNA5	rs17486278-A	0.63	5E-10	(normal, EA)	0.03	[0.020-0.040] unit increase	Illumina [6942916] (imputed)	N
1186	chr15	78867481	78867482	rs17486278	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q25.1	CHRNA5	rs17486278-?	0.34	2E-7	(All)	1.18		Affymetrix, Illumina [up to 2500000] (imputed)	N
1186	chr15	78868397	78868398	rs2456020	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs2456020-T	0.29	1E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78868397	78868398	rs2456020	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs2456020-T	0.286	2E-9		0.06	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78868635	78868636	rs72740964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs72740964-A	0.399	6E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78868635	78868636	rs72740964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs72740964-A	0.342	7E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78868635	78868636	rs72740964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs72740964-A	0.344	8E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78870802	78870803	rs576982	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs576982-T	0.239	1E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78870802	78870803	rs576982	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs576982-T	0.237	2E-9		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873118	78873119	rs569207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs569207-T	0.237	5E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873118	78873119	rs569207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs569207-T	0.236	1E-9		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873975	78873976	rs637137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs637137-A	0.241	6E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873975	78873976	rs637137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs637137-A	0.239	1E-9		0.062	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873992	78873993	rs7180002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs7180002-A	0.601	6E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873992	78873993	rs7180002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs7180002-A	0.667	1E-16		0.016	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78873992	78873993	rs7180002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs7180002-A	0.664	1E-15		0.078	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78875622	78875623	rs1700006	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs1700006-?	NR	5E-12				NR [2625067]	N
1186	chr15	78875622	78875623	rs1700006	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs1700006-?	NR	3E-8				NR [2625067]	N
1186	chr15	78875622	78875623	rs1700006	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		CHRNA5	rs1700006-A	0.812	9E-8		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78877380	78877381	rs56390833	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs56390833-A	0.396	5E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78877380	78877381	rs56390833	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs56390833-A	0.329	7E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78877380	78877381	rs56390833	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs56390833-A	0.333	2E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78878540	78878541	rs951266	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's age at death)	317,652 British ancestry individuals	NA	15q25.1	CHRNA5	rs951266-G	0.670568	6E-14		0.0213	[0.016-0.027] unit increase	Affymetrix [11535925] (imputed)	N
1186	chr15	78878540	78878541	rs951266	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	15q25.1	CHRNA5	rs951266-G	0.670568	1E-11		0.0236	[0.017-0.03] unit increase	Affymetrix [11535925] (imputed)	N
1186	chr15	78878540	78878541	rs951266	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	15q25.1	CHRNA5	rs951266-G	0.670568	1E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix [11535925] (imputed)	N
1186	chr15	78878540	78878541	rs951266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs951266-?	NR	2E-10		0.01704	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78878540	78878541	rs951266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs951266-?	NR	2E-9		0.07963	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78878540	78878541	rs951266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs951266-A	0.502	4E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78878540	78878541	rs951266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs951266-A	0.596	2E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78878540	78878541	rs951266	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs951266-A	0.596	1E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78880751	78880752	rs2229961	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q25.1	NR	rs2229961-A	0.015	2E-24		0.100925	[0.082-0.12] unit increase	NR [9732723] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	15q25.1	CHRNA5	rs16969968-A	0.33	5E-25		1.11	[1.09 -1.14]	Illumina [at least 109036]	N
1186	chr15	78882924	78882925	rs16969968	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Time to smoke first cigarette in the morning	18,567 European ancestry individuals	10,061 European ancestry individuals	15q25.1	CHRNA5	rs16969968-G		1E-17		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Fagerstr?m test for nicotine dependence	19,431 European ancestry individuals	7,010 European ancestry individuals	15q25.1	CHRNA5	rs16969968-G		4E-28		0.23	[0.19-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	15q25.1	CHRNA5	rs16969968-A	0.34	3E-139		0.096	[0.089-0.103] unit increase	Illumina [~ 250000] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	29758381	Marees AT	2018-04-25	Drug Alcohol Depend	Exploring the role of low-frequency and rare exonic variants in alcohol and tobacco use.	ICD10 Z72.0: Tobacco use	7,432 individuals	1,927 cases, 25,141 controls	15q25.1	CHRNA5	rs16969968-?		2E-7				Illumina [247850]	N
1186	chr15	78882924	78882925	rs16969968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs16969968-?	NR	2E-10		0.01709	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA5	rs16969968-?	NR	2E-9		0.07994	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA5	rs16969968-A	0.503	4E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs16969968-A	0.578	1E-15		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78882924	78882925	rs16969968	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs16969968-A	0.578	6E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78883812	78883813	rs518425	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	15q25.1	NR	rs518425-G	0.285	2E-12		0.03050268	[0.022-0.039] unit decrease	NR [~ 10000000] (imputed)	N
1186	chr15	78883812	78883813	rs518425	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA5	rs518425-A	0.654	2E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78884552	78884553	rs76474922	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	15q25.1		rs76474922-A	NR	3E-9		0.02	[0.014-0.026] unit increase	NR [7831927]	N
1186	chr15	78886197	78886198	rs8192482	29767774	Lutz SM	2018-05-15	Nicotine Tob Res	Common and rare variants genetic association analysis of cigarettes per day among ever smokers in COPD cases and controls.	Current cigarettes per day in chronic obstructive pulmonary disease	2,812 European ancestry cases, 3,846 European ancestry controls, 821 African American cases, 2,459 African American controls	2,627 cases, 986 controls	15q25.1	CHRNA3	rs8192482-T	0.37	2E-15		0.12	[NR] unit increase	Illumina [NR]	N
1186	chr15	78886197	78886198	rs8192482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs8192482-T	0.399	5E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78886197	78886198	rs8192482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192482-T	0.342	3E-15		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78886197	78886198	rs8192482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192482-T	0.346	6E-15		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78886946	78886947	rs4887067	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs4887067-A	0.399	4E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78886946	78886947	rs4887067	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4887067-A	0.342	3E-15		0.017	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78886946	78886947	rs4887067	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4887067-A	0.346	5E-15		0.079	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78891626	78891627	rs12910984	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	15q25.1		rs12910984-A	0.76	9E-10		1.15	[1.11-1.19]	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78891626	78891627	rs12910984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs12910984-A	0.613	9E-8		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78892660	78892661	rs7359276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7359276-T	0.686	4E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78892660	78892661	rs7359276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7359276-T	0.688	4E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in non diabetes	6,732 Finnish ancestry cases, 416,855 Finnish ancestry controls, 6,732 non-Scandinavian ancestry cases, 416,855 non-Scandinavian ancestry controls, 6,732 British ancestry cases, 416,855 British ancestry controls	NA	15q25.1		rs1051730-T	0.34	9E-9		1.12	[1.09-1.16]	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease in ever smokers	7,404 Finnish ancestry cases, 205,693 Finnish ancestry controls, 7,404 non-Scandinavian ancestry cases, 205,693 non-Scandinavian ancestry controls, 7,404 British ancestry cases, 205,693 British ancestry controls	NA	15q25.1		rs1051730-T	0.33	1E-8		1.12	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	15q25.1	CHRNA3	rs1051730-A	NR	6E-121		0.101	[0.091-0.111] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	30104567	Ji X	2018-08-13	Nat Commun	Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk.	Lung cancer in ever smokers	4,628 European ancestry cases, 4,041 European ancestry controls	16,341 European ancestry cases, 9,930 European ancestry controls	15q25.1	CHRNA3	rs1051730-T	NR	3E-52		1.3369	[NR]	Illumina [20734083] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	30104567	Ji X	2018-08-13	Nat Commun	Identification of susceptibility pathways for the role of chromosome 15q25.1 in modifying lung cancer risk.	Lung cancer	4,918 European ancestry cases, 5,555 European ancestry controls	18,439 European ancestry cases, 14,026 European ancestry controls	15q25.1	CHRNA3	rs1051730-T	NR	3E-49		1.27	[NR]	Illumina [20734083] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	28520984	Saccone NL	2017-05-17	Nicotine Tob Res	Genome-wide association study of heavy smoking and daily/nondaily smoking in the Hispanic Community Health Study / Study of Latinos (HCHS/SOL).	Smoking status (heavy vs light)	1,929 Hispanic heavy smoker cases, 3,156 Hispanic light smoker controls	NA	15q25.1	CHRNA5, CHRNB4, CHRNA3	rs1051730-A	0.231	2E-8		1.34	[1.21-1.49]	Illumina [~ 11400000] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs1051730-?	NR	9E-11		0.01729	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs1051730-?	NR	2E-9		0.07976	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs1051730-A	0.6	2E-7		0.013	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs1051730-A	0.67	1E-16		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs1051730-A	0.666	2E-15		0.077	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	20418890	Tobacco and Genetics Consortium	2010-04-25	Nat Genet	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	15q25.1	CHRNA3	rs1051730-G	0.65	3E-73	(CPD)	1.02	[0.91-1.13] CPD decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	20418889	Liu JZ	2010-04-25	Nat Genet	Meta-analysis and imputation refines the association of 15q25 with smoking quantity.	Smoking behavior	41,150 European ancestry individuals	120,516 European ancestry individuals	15q25.1	CHRNA5, CHRNA3	rs1051730-G	0.66	2E-66		0.08	[0.07-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	20418888	Thorgeirsson TE	2010-04-25	Nat Genet	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	15q25.1	NR	rs1051730-A	0.34	2E-69		0.8	[0.70-0.90] CPD increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1186	chr15	78894338	78894339	rs1051730	19836008	Landi MT	2009-10-15	Am J Hum Genet	A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.	Lung adenocarcinoma	5,739 European ancestry cases, 5,848 European ancestry controls	7,561 European ancestry cases, 13,818 European ancestry controls	15q25.1	CHRNA5, CHRNA3	rs1051730-T	0.35	2E-51		1.31	[1.27-1.36]	Illumina [515922]	N
1186	chr15	78894338	78894339	rs1051730	18978790	McKay JD	2008-11-02	Nat Genet	Lung cancer susceptibility locus at 5p15.33.	Lung cancer	2,971 European ancestry cases, 3,746 European ancestry controls	2,899 European ancestry cases, 5,573 European ancestry controls	15q25.1	intergenic	rs1051730-A	NR	1E-15		1.35	[1.25-1.45]	Illumina [315194]	N
1186	chr15	78894338	78894339	rs1051730	18385739	Thorgeirsson TE	2008-04-03	Nature	A variant associated with nicotine dependence, lung cancer and peripheral arterial disease.	Nicotine dependence	10,995 European ancestry individuals	4,848 European ancestry individuals	15q25.1	CHRNA5, CHRNA3, CHRNB4	rs1051730-T	0.35	6E-20		0.1	[0.08-0.12] cigarettes per day increase	Illumina [306207]	N
1186	chr15	78894758	78894759	rs3743078	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	15q25.1	NR	rs3743078-?		1E-12				NR [8377093]	N
1186	chr15	78894758	78894759	rs3743078	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	15q25.1	NR	rs3743078-?		1E-12				NR [8377093]	N
1186	chr15	78894758	78894759	rs3743078	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q25.1	CHRNA3, CHRNA5, CHRNB4, HYKK, IREB2, PSMA4	rs3743078-?	NR	3E-12		1.081081	[1.06-1.10]	Illumina [8000000] (imputed)	N
1186	chr15	78894758	78894759	rs3743078	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs3743078-C	0.354	3E-6		0.046	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.1	NR	rs1317286-G	0.33	3E-25			[NR]	Affymetrix [9886854] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	15q25.1	NR	rs1317286-G	0.33	5E-28		1.19	[1.15-1.22]	Affymetrix [9886854] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	15q25.1	CHRNA3	rs1317286-A	NR	2E-7				Affymetrix [11535925] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	15q25.1	CHRNA3	rs1317286-A	NR	2E-31				Affymetrix [11535925] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	15q25.1	CHRNA3	rs1317286-A	0.668	1E-26		0.0254	[0.021-0.03] unit decrease	Affymetrix [11535925] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs1317286-A	0.598	4E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs1317286-A	0.658	3E-14		0.014	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78896128	78896129	rs1317286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs1317286-A	0.656	3E-14		0.07	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78896546	78896547	rs938682	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	15q25.1	NR	rs938682-A	0.771	1E-41		0.0246334	[0.021-0.028] unit increase	NR [9732723] (imputed)	N
1186	chr15	78896546	78896547	rs938682	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	15q25.1	CHRNA3	rs938682-A	0.764	2E-69				Affymetrix, Illumina [up to 1207583] (imputed)	N
1186	chr15	78896546	78896547	rs938682	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs938682-A	0.629	2E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78896546	78896547	rs938682	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs938682-A	0.63	5E-10		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic bronchitis	10,159 European ancestry cases, 440,263 European ancestry controls, 271 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	15q25.1		rs12914385-T	NR	2E-16		0.1259	[0.096-0.156] unit increase	Affymetrix, Illumina [25840074] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	15q25.1		rs12914385-?	NR	6E-9		1.18515	[1.13-1.24]	NR [673172]	N
1186	chr15	78898722	78898723	rs12914385	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (current)	17,014 European ancestry individuals	NA	15q25.1		rs12914385-T	NR	4E-10		0.014	NR unit increase	Affymetrix [~ 79000000] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Exhaled carbon monoxide levels in smokers with chronic obstructive pulmonary disease	2,706 European ancestry individuals	NA	15q25.1	CHRNA3, CHRNA5	rs12914385-?	NR	2E-8		0.12	[0.081-0.159] unit increase	Illumina [7807992] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	15q25.1	CHRNA3, CHRNA5, IREB2	rs12914385-T	0.38	2E-17	(ratio950)	0.11	NR unit increase	Illumina [at least 10657975] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs12914385-?	NR	1E-11		0.01751	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs12914385-?	NR	2E-10		0.08249	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs12914385-T	0.551	8E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs12914385-T	0.63	6E-18		0.016	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs12914385-T	0.626	1E-17		0.078	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	15q25.1	CHRNA3, AGPHD1	rs12914385-?	0.42	2E-8		1.32	[1.20-1.45]	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	15q25.1	AGPHD1, CHRNA3, IREB2	rs12914385-T	0.42	3E-6	(EA)	1.27	[NR]	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	25101718	Lee JH	2015-03-01	Am J Respir Cell Mol Biol	IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease	3,281 European ancestry cases, 494 African American cases, 2,712 European ancestry smoker controls, 1,749 African American smoker controls	NA	15q25.1	CHRNA3	rs12914385-T	NR	6E-7		1.23	[NR]	Illumina [NR] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (severe)	3,145 European ancestry cases, 3,955 European ancestry controls, 352 African American cases, 1,749 African American controls	2,651 cases and their relatives	15q25.1	CHRNA3	rs12914385-T	0.42	3E-16		1.39	[1.29-1.51]	Illumina [up to 701491] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	15q25.1	CHRNA3	rs12914385-T	0.42	6E-14		1.28	[1.20-1.36]	Illumina [up to 701491] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	15q25.1	CHRNA5, CHRNA3	rs12914385-C	0.61	6E-7		0.0077	[0.0048-0.0106] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1186	chr15	78898722	78898723	rs12914385	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	15q25.1	CHRNA3	rs12914385-T	NR	5E-7	(FEV1)	0.025	[0.015-0.035] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q25.1	CHRNA3	rs55676755-G	0.34	3E-26		1.11	[1.09-1.14]	Affymetrix, Illumina [6224355] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs55676755-C	0.6	2E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs55676755-C	0.67	2E-19		0.017	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs55676755-C	0.62	5E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs55676755-C	0.667	2E-17		0.08	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78898931	78898932	rs55676755	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	15q25.1	CHRNA3	rs55676755-C	NR	2E-9	(%LAA-950, All)	0.11	[0.077-0.143] unit decrease	Illumina [7600000] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC) variance	316,614 European ancestry individuals	NA	15q25.1	CHRNA3	rs56077333-?	NR	1E-14				NR [5554549] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Lung function (FEV1/FVC)	316,614 European ancestry individuals	NA	15q25.1	CHRNA3	rs56077333-?	NR	2E-6				NR [5554549] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs56077333-A	0.379	1E-7		0.014	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs56077333-A	0.82	6E-6	(AA)	0.02	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs56077333-A	0.314	1E-19		0.018	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78899002	78899003	rs56077333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs56077333-A	0.318	5E-18		0.084	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78899212	78899213	rs7183604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7183604-T	0.239	2E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78899212	78899213	rs7183604	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7183604-T	0.237	4E-10		0.064	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78899718	78899719	rs11637630	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q25.1	NR	rs11637630-A	0.773	4E-167		0.0721336	[0.067-0.077] unit increase	NR [9732723] (imputed)	N
1186	chr15	78899718	78899719	rs11637630	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs11637630-A	0.76	2E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78899718	78899719	rs11637630	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs11637630-A	0.762	4E-10		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78900646	78900647	rs112878080	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	15q25.1	CHRNA3, PSMA4, IREB2, AC027228.1, ACSBG1, RP11-160C18.2, CHRNB4, ADAMTS7, RPL18P11, RP11-160C18.4, RP11-114H24.5, TBC1D2B, A16CHRNA5	rs112878080-G	0.37	3E-10	(EA)	0.13	0.09-0.17 unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78900700	78900701	rs138544659	27669027	Boueiz A	2016-09-26	Am J Respir Crit Care Med	Genome-Wide Association Study of the Genetic Determinants of Emphysema Distribution.	Emphysema distribution in smoking	7,039 European ancestry individuals, 2,955 African American individuals, 1538 individuals	NA	15q25.1	CHRNA3, CHRNA5, IREB2	rs138544659-T	0.7	1E-14	(diff950)	0.12	NR unit decrease	Illumina [at least 10657975] (imputed)	N
1186	chr15	78900700	78900701	rs138544659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs138544659-T	0.65	5E-7		0.014	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78900700	78900701	rs138544659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs138544659-T	0.712	8E-17		0.018	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78900700	78900701	rs138544659	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs138544659-T	0.708	3E-16		0.087	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78900907	78900908	rs147144681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs147144681-T	0.373	2E-7		0.014	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78900907	78900908	rs147144681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs147144681-T	0.309	3E-18		0.018	unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78900907	78900908	rs147144681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs147144681-T	0.312	6E-17		0.084	NR unit decrease	Illumina [NR] (imputed)	N
1186	chr15	78900908	78900909	rs7171869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7171869-A	0.302	7E-7		0.051	NR unit increase	Illumina [NR] (imputed)	N
1186	chr15	78903986	78903987	rs189218934	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs189218934-T	0.392	1E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1186	chr15	78903986	78903987	rs189218934	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs189218934-T	0.389	6E-10		0.068	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78906176	78906177	rs146009840	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs146009840-T	0.335	2E-17	(Conditioned on chr15:78849779, chr15:78908565, chr15:78814046)	0.022120172	[0.017-0.027] unit increase	NR [~ 10000000] (imputed)	N
1187	chr15	78906176	78906177	rs146009840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs146009840-A	0.6	3E-7		0.013	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78906176	78906177	rs146009840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs146009840-A	0.66	2E-16		0.017	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78906176	78906177	rs146009840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs146009840-A	0.657	2E-15		0.079	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78907344	78907345	rs2869546	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	15q25.1	NR	rs2869546-?	NR	1E-6		0.055146538	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1187	chr15	78907405	78907406	rs7177514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7177514-C	0.759	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78907405	78907406	rs7177514	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7177514-C	0.76	1E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78907655	78907656	rs6495308	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs6495308-T	0.375	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78907655	78907656	rs6495308	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs6495308-T	0.373	1E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78907735	78907736	rs12443170	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q25.1	CHRNA3, CHRNA5, HYKK, PSMA4	rs12443170-?		2E-8		1.098901	[1.06-1.12]	Affymetrix, Illumina [NR]	N
1187	chr15	78907858	78907859	rs8042059	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042059-A	0.759	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78907858	78907859	rs8042059	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042059-A	0.76	1E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78908009	78908010	rs8042494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042494-T	0.237	8E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78908009	78908010	rs8042494	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042494-T	0.236	7E-8		0.055	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78908031	78908032	rs8042374	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q25.1	ADAMTS7, CHRNA3, CHRNA5, CHRNB4, HYKK, IREB2, LOC646938, PSMA4	rs8042374-A		5E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [NR]	N
1187	chr15	78908031	78908032	rs8042374	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042374-A	0.627	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78908031	78908032	rs8042374	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8042374-A	0.627	1E-7		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78908031	78908032	rs8042374	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q25.1	NR	rs8042374-A	NR	1E-12		1.09	[NR]	Illumina [7158791] (imputed)	N
1187	chr15	78908031	78908032	rs8042374	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q25.1	AC027228.1, AGPHD1, CHRNA3, CHRNA5, CHRNB4, IREB2, PSMA4	rs8042374-A	0.725	2E-13		1.093	[1.067-1.119]	Affymetrix, Illumina [9005918] (imputed)	N
1187	chr15	78908031	78908032	rs8042374	18978787	Wang Y	2008-11-02	Nat Genet	Common 5p15.33 and 6p21.33 variants influence lung cancer risk.	Lung cancer	5,095 European ancestry cases, 5,200 European ancestry controls	2,448 European ancestry cases, 2,983 European ancestry controls	15q25.1	NR	rs8042374-?	NR	8E-12				Illumina [223891]	N
1187	chr15	78908153	78908154	rs8043009	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q25.1	NR	rs8043009-?	NR	3E-12				Illumina [up to 5582932] (imputed)	N
1187	chr15	78908153	78908154	rs8043009	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8043009-C	0.237	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78908153	78908154	rs8043009	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8043009-C	0.236	6E-8		0.055	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	15q25.1	NR	rs28681284-T	0.2207	1E-12		0.09633881	[0.07-0.123] unit decrease	NR [NR]	N
1187	chr15	78908564	78908565	rs28681284	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	15q25.1	NR	rs28681284-T	0.2207	8E-9		0.07864479	[0.052-0.105] unit decrease	NR [NR]	N
1187	chr15	78908564	78908565	rs28681284	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	15q25.1	NR	rs28681284-?		3E-8				NR [520857]	N
1187	chr15	78908564	78908565	rs28681284	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	15q25.1	CHRNA3, CHRNB4	rs28681284-?		6E-12				NR [6786993] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q25.1	NR	rs28681284-?	NR	3E-12		1.0848105	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs28681284-T	0.21	2E-58	(Conditioned on chr15:78814046)	0.048676305	[0.043-0.055] unit decrease	NR [~ 10000000] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.1	CHRNA3	rs28681284-C	NR	6E-13	(EA)	1.107	[1.08-1.13]	Illumina [6627481] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs28681284-T	0.184	1E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78908564	78908565	rs28681284	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs28681284-T	0.185	2E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78909069	78909070	rs4887069	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	15q25.1		rs4887069-?	NR	4E-8		0.0181	NR unit decrease	NR [4425810] (imputed)	N
1187	chr15	78909069	78909070	rs4887069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4887069-A	0.756	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78909069	78909070	rs4887069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4887069-A	0.758	2E-7		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78910257	78910258	rs3825845	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.1	CHRNA3	rs3825845-C	NR	4E-10		1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
1187	chr15	78910257	78910258	rs3825845	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q25.1	CHRNA3, PSMA4	rs3825845-C	NR	2E-10		1.0729614	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1187	chr15	78910257	78910258	rs3825845	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs3825845-T	0.213	5E-9		0.013	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78910257	78910258	rs3825845	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs3825845-T	0.212	5E-10		0.066	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78910266	78910267	rs28669908	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q25.1	CHRNA3	rs28669908-?	NR	5E-12		0.017219163	[0.012-0.022] unit increase	NR [7306098]	N
1187	chr15	78910266	78910267	rs28669908	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs28669908-A	0.177	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78910266	78910267	rs28669908	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs28669908-A	0.178	5E-8		0.066	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78910461	78910462	rs8192478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192478-A	0.68	1E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78910461	78910462	rs8192478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192478-A	0.684	2E-7		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78910462	78910463	rs8192477	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192477-C	0.32	1E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78910462	78910463	rs8192477	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8192477-C	0.316	2E-7		0.052	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.1	NR	rs8040868-C	0.39	2E-8		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.1	NR	rs8040868-C	0.39	8E-24			[NR]	Affymetrix [9886854] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	15q25.1	NR	rs8040868-C	0.39	3E-8		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	15q25.1	NR	rs8040868-C	0.39	7E-20		1.3	[1.23-1.38]	Affymetrix [9886854] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (past)	77,515 European ancestry individuals	NA	15q25.1		rs8040868-C	NR	2E-20		0.044	NR unit increase	Affymetrix [~ 79000000] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Airflow obstruction in ever smokers	2,534 European ancestry unaffected individuals, 607 European ancestry stage 1 individuals, 1,424 European ancestry stage 2 individuals, 909 European ancestry stage 3 individuals, 487 European ancestry stage 4 individuals	NA	15q25.1	NR	rs8040868-?	NR	3E-11				NR [630860]	N
1187	chr15	78911180	78911181	rs8040868	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs8040868-C	0.4	2E-10	(Conditioned on chr15:78906177, chr15:78849779, chr15:78908565, chr15:78814046)	0.016012004	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.1		rs8040868-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	15q25.1	CHRNA3	rs8040868-C	0.42	4E-13		1.33	[1.23-1.43]	Illumina [9327222] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	15q25.1	CHRNA3	rs8040868-C	0.413519195	3E-41		1.2904406	[1.243425108-1.339233734]	Illumina [10439017] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1/FVC ratio	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs8040868-?	NR	2E-11		0.0173	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Pre bronchodilator FEV1	6,659 European ancestry current and former smoker individuals	NA	15q25.1	CHRNA3	rs8040868-?	NR	4E-11		0.08504	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs8040868-T	0.498	3E-6		0.011	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8040868-T	0.433	9E-12		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs8040868-T	0.434	1E-13		0.064	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	15q25.1	CHRNA3	rs8040868-T	NR	9E-8	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	15q25.1	CHRNA3	rs8040868-T	NR	7E-7	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1187	chr15	78911180	78911181	rs8040868	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q25.1	CHRNA3	rs8040868-G	0.239	6E-8	(Sleep energy expenditure adj weight )	0.05	[NR] kcal/d increase	Illumina [899892]	N
1187	chr15	78911671	78911672	rs4243084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q25.1		rs4243084-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1187	chr15	78911671	78911672	rs4243084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs4243084-C	0.403	3E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78911671	78911672	rs4243084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4243084-C	0.335	2E-14		0.014	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78911671	78911672	rs4243084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNA3	rs4243084-C	0.384	5E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78911671	78911672	rs4243084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs4243084-C	0.338	8E-14		0.07	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78912942	78912943	rs7170068	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (1df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.1	CHRNA3	rs7170068-A	0.22	2E-9		0.79	[0.74-0.86]	Affymetrix [9886854] (imputed)	N
1187	chr15	78912942	78912943	rs7170068	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7170068-A	0.21	9E-9		0.013	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78912942	78912943	rs7170068	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNA3	rs7170068-A	0.209	9E-10		0.068	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78914229	78914230	rs13329271	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	15q25.1	CHRNA3	rs13329271-C	0.516	3E-16		0.044	[-0.10496-0.19296] unit decrease	Illumina [5961480] (imputed)	N
1187	chr15	78914229	78914230	rs13329271	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	58,784 Japanese ancestry males	NA	15q25.1	CHRNA3	rs13329271-C	0.516	2E-13		0.044	[-0.14808-0.23608] unit decrease	Illumina [6108828] (imputed)	N
1187	chr15	78914229	78914230	rs13329271	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs13329271-A	0.779	6E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78914229	78914230	rs13329271	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs13329271-A	0.78	4E-9		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78914533	78914534	rs8039449	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs8039449-T	0.429	1E-6		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78914533	78914534	rs8039449	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8039449-T	0.361	2E-12		0.013	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78914533	78914534	rs8039449	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8039449-T	0.364	2E-11		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915244	78915245	rs6495309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		Intergenic	rs6495309-T	0.367	5E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78915244	78915245	rs6495309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		Intergenic	rs6495309-T	0.367	5E-9		0.063	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	15q25.1		rs10851907-A	0.41	1E-35		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	15q25.1	CHRNA3	rs10851907-A	0.4105	1E-13		1.06	[1.05-1.08]	Affymetrix [at least 20323458] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	15q25.1	CHRNA3	rs10851907-A	0.41	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	15q25.1	CHRNA3	rs10851907-A	0.41	1E-9		0.034	[0.023-0.045] unit increase	Affymetrix [at least 8900000] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs10851907-A	0.476	3E-6		0.011	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs10851907-A	0.445	2E-12		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915863	78915864	rs10851907	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs10851907-A	0.446	3E-13		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915871	78915872	rs55958997	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	2,835 European ancestry cases, 107,469 European ancestry controls	15q25.1	CHRNA3	rs55958997-A	0.3679	9E-14		1.12	1.09-1.16	Affymetrix [18689289] (imputed)	N
1187	chr15	78915871	78915872	rs55958997	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	Intergenic	rs55958997-A	0.425	7E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915871	78915872	rs55958997	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs55958997-A	0.365	1E-13		0.014	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915871	78915872	rs55958997	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs55958997-A	0.368	6E-13		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78915871	78915872	rs55958997	25072098	Bloom AJ	2014-09-01	Ann Am Thorac Soc	Beyond cigarettes per day. A genome-wide association study of the biomarker carbon monoxide.	Exhaled carbon monoxide levels	1,521 European ancestry smoker individuals, 247 African American smoker individuals	NA	15q25.1	CHRNA5, CHRNB4, CHRNA3	rs55958997-?	NR	2E-9	(EA)	2.75	[1.86-3.64] unit increase	Illumina [NR]	N
1187	chr15	78917398	78917399	rs1948	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	15q25.1	CHRNB4, CHRNA3, LOC390612	rs1948-?		2E-6		1.22	[1.12-1.32]	Illumina [5352724] (imputed)	N
1187	chr15	78920934	78920935	rs12593950	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12593950-C	0.234	1E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78920934	78920935	rs12593950	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12593950-C	0.232	4E-9		0.063	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78922637	78922638	rs2869548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNB4	rs2869548-A	0.421	3E-7		0.013	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78922637	78922638	rs2869548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs2869548-A	0.364	6E-14		0.016	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78922637	78922638	rs2869548	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs2869548-A	0.367	4E-13		0.074	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78923504	78923505	rs12914008	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	15q25.1	CHRNB4	rs12914008-G	0.302	6E-6	(IIV)	0.6	[0.35-0.85] unit increase	Illumina [799713]	N
1187	chr15	78923844	78923845	rs28534575	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q25.1	CHRNB4	rs28534575-T	0.78	5E-16	(conditional on rs55676755)	1.1	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1187	chr15	78923844	78923845	rs28534575	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs28534575-T	0.778	9E-8		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78923844	78923845	rs28534575	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs28534575-T	0.779	5E-9		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78923986	78923987	rs17487223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNB4	rs17487223-T	0.416	4E-7		0.012	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78923986	78923987	rs17487223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs17487223-T	0.349	3E-15		0.016	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78923986	78923987	rs17487223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs17487223-T	0.353	2E-14		0.076	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78925434	78925435	rs4887072	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	15q25.1	CHRNA3/5	rs4887072-A		2E-9				Illumina [458525]	N
1187	chr15	78925434	78925435	rs4887072	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs4887072-A	0.778	2E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78925434	78925435	rs4887072	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs4887072-A	0.779	2E-8		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78926017	78926018	rs950776	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q25.1	CHRNB4	rs950776-?	0.68	4E-7	(Additive)	1.09	[1.06-1.13]	Affymetrix [319222]	N
1187	chr15	78926444	78926445	rs72743158	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.1	CHRNB4	rs72743158-T	0.579	9E-7		0.012	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78926444	78926445	rs72743158	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs72743158-T	0.637	8E-14		0.016	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78926444	78926445	rs72743158	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs72743158-T	0.633	3E-13		0.075	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78926725	78926726	rs12440014	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (1df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.1	CHRNB4	rs12440014-G	0.24	9E-12		0.83	[0.79-0.88]	Affymetrix [9886854] (imputed)	N
1187	chr15	78926725	78926726	rs12440014	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12440014-C	0.782	2E-8		0.013	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78926725	78926726	rs12440014	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12440014-C	0.782	3E-10		0.069	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78928263	78928264	rs12441088	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12441088-T	0.37	7E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78928263	78928264	rs12441088	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs12441088-T	0.369	3E-9		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78928398	78928399	rs67175876	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs67175876-A	0.676	2E-7		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78931056	78931057	rs9920506	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs9920506-A	0.186	7E-7		0.063	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78934317	78934318	rs67426328	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs67426328-C	0.621	2E-11		0.014	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78934317	78934318	rs67426328	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs67426328-C	0.617	1E-10		0.064	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78934550	78934551	rs3813567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs3813567-A	0.808	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78934550	78934551	rs3813567	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs3813567-A	0.808	1E-7		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78935475	78935476	rs11633223	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	15q25.1	NR	rs11633223-A		4E-8				Illumina [458865]	N
1187	chr15	78936167	78936168	rs55988292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs55988292-A	0.628	2E-11		0.013	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78936167	78936168	rs55988292	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs55988292-A	0.624	2E-11		0.064	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78942385	78942388	rs138784116	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	15q25.1	CHRNB4	rs138784116-D	0.37	5E-14		0.89	[0.86-0.92]	Illumina [484196]	N
1187	chr15	78944537	78944538	rs11633178	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11633178-A	0.622	2E-9		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78944537	78944538	rs11633178	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11633178-A	0.619	7E-9		0.055	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78944717	78944718	rs11634351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11634351-A	0.387	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78944717	78944718	rs11634351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11634351-A	0.39	6E-8		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78947610	78947611	rs2170311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs2170311-A	0.376	3E-9		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78947610	78947611	rs2170311	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs2170311-A	0.379	8E-9		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78948318	78948319	rs11638830	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11638830-C	0.387	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78948318	78948319	rs11638830	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	CHRNB4	rs11638830-C	0.39	7E-8		0.052	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78954378	78954379	rs12899135	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12899135-A	0.612	1E-8		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78954378	78954379	rs12899135	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12899135-A	0.608	4E-8		0.054	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78956805	78956806	rs1996371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1996371-T	0.57	4E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78956805	78956806	rs1996371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1996371-T	0.568	1E-7		0.051	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78960528	78960529	rs6495314	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	15q25.1	CHRNB4, RP11-160C18.2	rs6495314-C	0.44	4E-6	(male)	0.0768	[0.045-0.109] unit decrease	Illumina [6380737] (imputed)	N
1187	chr15	78960528	78960529	rs6495314	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs6495314-A	0.39	1E-6		0.009	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78962963	78962964	rs4420500	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4420500-T	0.371	5E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78962963	78962964	rs4420500	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4420500-T	0.375	1E-7		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78966654	78966655	rs11639372	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs11639372-T	0.423901062	5E-37		1.2087405	[1.173918989-1.244594833]	Illumina [10439017] (imputed)	N
1187	chr15	78966654	78966655	rs11639372	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs11639372-T	0.408811078	3E-52		1.1972085	[1.169764209-1.225296649]	Illumina [10439017] (imputed)	N
1187	chr15	78966654	78966655	rs11639372	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs11639372-T	0.403532831	6E-26		1.1883514	[1.150784342-1.227144715]	Illumina [10439017] (imputed)	N
1187	chr15	78966654	78966655	rs11639372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639372-T	0.381	9E-9		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78966654	78966655	rs11639372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639372-T	0.384	5E-9		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78967400	78967401	rs12902602	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.1	CHRNB4	rs12902602-A	0.609	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1187	chr15	78967400	78967401	rs12902602	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	15q25.1	CHRNB4	rs12902602-A	0.607	7E-13		0.044	[0.032-0.056] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1187	chr15	78967400	78967401	rs12902602	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.1	CHRNB4	rs12902602-A	0.609	6E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1187	chr15	78967400	78967401	rs12902602	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12902602-A	0.612	2E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78967400	78967401	rs12902602	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12902602-A	0.608	5E-8		0.053	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78968178	78968179	rs1021071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1021071-C	0.389	1E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78968178	78968179	rs1021071	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1021071-C	0.391	5E-8		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78968228	78968229	rs11072785	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072785-T	0.386	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78968228	78968229	rs11072785	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072785-T	0.389	3E-8		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78968267	78968268	rs11857532	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11857532-T	0.519	5E-6		0.008	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78969255	78969256	rs4886579	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q25.1	NR	rs4886579-T	0.4	1E-13		1.12	[1.08-1.16]	Illumina [8468885] (imputed)	N
1187	chr15	78969255	78969256	rs4886579	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886579-T	0.386	3E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78969255	78969256	rs4886579	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886579-T	0.389	3E-8		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78969384	78969385	rs4886580	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886580-T	0.598	2E-8		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78969384	78969385	rs4886580	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886580-T	0.597	2E-7		0.046	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78973392	78973393	rs8043123	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	15q25.1	ADAMTS7	rs8043123-C	0.753883	2E-7		0.224144	[0.14-0.31] unit decrease	Affymetrix [8590397] (imputed)	N
1187	chr15	78975854	78975855	rs72743199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72743199-A	0.613	8E-9		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78975854	78975855	rs72743199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs72743199-A	0.61	2E-8		0.054	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78978363	78978364	rs4887077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887077-T	0.428	6E-9		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78978363	78978364	rs4887077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887077-T	0.43	2E-8		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78981281	78981282	rs34275594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34275594-A	0.704	8E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78981281	78981282	rs34275594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34275594-A	0.703	4E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78981347	78981348	rs12901913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12901913-T	0.39	1E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78981347	78981348	rs12901913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12901913-T	0.392	2E-8		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78983558	78983559	rs11638372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		Intergenic	rs11638372-T	0.423	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78983558	78983559	rs11638372	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA		Intergenic	rs11638372-T	0.424	8E-8		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78984213	78984214	rs922692	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs922692-A	0.389	1E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78984213	78984214	rs922692	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs922692-A	0.392	2E-8		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78992024	78992025	rs11072790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072790-T	0.385	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78992024	78992025	rs11072790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072790-T	0.388	3E-8		0.053	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78992115	78992116	rs7169223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs7169223-A	0.696	3E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78992115	78992116	rs7169223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs7169223-A	0.694	2E-6		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78994932	78994933	rs12910627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12910627-C	0.385	2E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78994932	78994933	rs12910627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12910627-C	0.388	3E-8		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78995800	78995801	rs12324870	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12324870-T	0.317	7E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	78997075	78997076	rs11072791	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072791-A	0.389	1E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78997075	78997076	rs11072791	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072791-A	0.391	2E-8		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	78999910	78999911	rs11072792	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q25.1		rs11072792-G	0.42184	6E-6		0.030586	[0.017-0.044] unit decrease	Affymetrix [15580782] (imputed)	N
1187	chr15	78999910	78999911	rs11072792	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q25.1		rs11072792-G	0.42184	8E-7		0.034004	[0.021-0.047] unit decrease	Affymetrix [15580782] (imputed)	N
1187	chr15	78999910	78999911	rs11072792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072792-A	0.602	1E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	78999910	78999911	rs11072792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11072792-A	0.6	2E-7		0.051	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79001698	79001699	rs12899940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	15q25.1		rs12899940-T	NR	9E-9		0.0611	[0.04-0.082] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1187	chr15	79002754	79002755	rs12905273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12905273-A	0.702	4E-6		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79002831	79002832	rs62010554	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	15q25.1	CHRNB4, ADAMTS7	rs62010554-G	0.25	3E-12		1.06	[1.04-1.08]	Illumina [5167567] (imputed)	N
1187	chr15	79005503	79005504	rs11634543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11634543-T	0.378	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79005503	79005504	rs11634543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11634543-T	0.382	8E-8		0.051	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79007949	79007950	rs11638490	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11638490-T	0.378	1E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79007949	79007950	rs11638490	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11638490-T	0.381	1E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79017280	79017281	rs76919723	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs76919723-T	0.625	6E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79017280	79017281	rs76919723	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs76919723-T	0.623	5E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79017684	79017685	rs8038543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8038543-A	0.622	5E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79017684	79017685	rs8038543	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8038543-A	0.618	3E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79019023	79019024	rs11629637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11629637-T	0.581	5E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79019023	79019024	rs11629637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11629637-T	0.58	5E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79019545	79019546	rs3829786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3829786-A	0.38	6E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79019545	79019546	rs3829786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3829786-A	0.383	4E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79019577	79019578	rs899997	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	15q25.1	ADAMTS7	rs899997-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
1187	chr15	79019609	79019610	rs3813565	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs3813565-T	0.397141366	3E-19		1.2010475	[1.153867939-1.25015625]	Illumina [10439017] (imputed)	N
1187	chr15	79019609	79019610	rs3813565	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs3813565-T	0.401175298	1E-9		1.2131084	[1.139778258-1.291156411]	Illumina [10439017] (imputed)	N
1187	chr15	79019609	79019610	rs3813565	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3813565-T	0.626	2E-6		0.009	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79019609	79019610	rs3813565	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3813565-T	0.623	1E-6		0.046	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79020151	79020152	rs35583595	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs35583595-C	0.623	7E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79020151	79020152	rs35583595	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs35583595-C	0.619	4E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79020277	79020278	rs34563625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34563625-C	0.37	5E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79020277	79020278	rs34563625	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34563625-C	0.371	6E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79021036	79021037	rs2869554	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869554-T	0.636	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79021036	79021037	rs2869554	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869554-T	0.632	7E-7		0.049	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79021440	79021441	rs4886582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886582-A	0.658	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79021440	79021441	rs4886582	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886582-A	0.654	1E-6		0.05	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79021444	79021445	rs4886583	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886583-A	0.34	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79021444	79021445	rs4886583	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886583-A	0.344	1E-6		0.051	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79021463	79021464	rs4886584	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886584-A	0.343	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79021463	79021464	rs4886584	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886584-A	0.347	1E-6		0.05	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79022135	79022136	rs34225855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34225855-C	0.628	9E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79022135	79022136	rs34225855	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs34225855-C	0.625	6E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79022614	79022615	rs8027972	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8027972-T	0.647	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79022614	79022615	rs8027972	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs8027972-T	0.645	1E-6		0.048	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79022615	79022616	rs8027011	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	15q25.1	CHRNB4, LOC646938	rs8027011-?	NR	6E-18		0.088556	[0.068-0.109] unit decrease	Illumina [19707525] (imputed)	N
1187	chr15	79023432	79023433	rs1825082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1825082-A	0.372	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79023432	79023433	rs1825082	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1825082-A	0.375	7E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79023466	79023467	rs1825083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1825083-T	0.628	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79023466	79023467	rs1825083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs1825083-T	0.625	7E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79023729	79023730	rs11639049	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639049-A	0.628	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79023729	79023730	rs11639049	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639049-A	0.625	7E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79023765	79023766	rs11639166	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639166-C	0.372	9E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79023765	79023766	rs11639166	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639166-C	0.375	8E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024015	79024016	rs11639181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639181-A	0.406	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79024015	79024016	rs11639181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639181-A	0.409	7E-7		0.047	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79024213	79024214	rs11639375	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639375-A	0.372	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024213	79024214	rs11639375	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639375-A	0.375	7E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024267	79024268	rs11639382	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639382-A	0.372	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024267	79024268	rs11639382	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639382-A	0.375	7E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024349	79024350	rs11639347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639347-T	0.372	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79024349	79024350	rs11639347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs11639347-T	0.375	7E-7		0.047	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79025515	79025516	rs2869561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869561-T	0.629	1E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79025515	79025516	rs2869561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869561-T	0.627	1E-6		0.054	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79025576	79025577	rs4887083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887083-T	0.371	1E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79025576	79025577	rs4887083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887083-T	0.373	1E-6		0.054	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79025592	79025593	rs4887084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887084-T	0.633	5E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79025592	79025593	rs4887084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887084-T	0.631	9E-7		0.056	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79025682	79025683	rs4887085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs4887085-C	NR	7E-16		0.0762	[0.058-0.095] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1187	chr15	79025846	79025847	rs12907753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs12907753-G	0.459777812	3E-11		0.08069774	[0.057-0.104] unit decrease	Illumina [13427711] (imputed)	N
1187	chr15	79025962	79025963	rs12908207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12908207-T	0.37	7E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79025962	79025963	rs12908207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs12908207-T	0.372	1E-6		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026000	79026001	rs3894347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3894347-A	0.361	3E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026000	79026001	rs3894347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3894347-A	0.362	4E-7		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026083	79026084	rs79067624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs79067624-T	0.457232952	1E-8		0.11354205	[0.074-0.153] unit decrease	Illumina [13425416] (imputed)	N
1187	chr15	79026276	79026277	rs3971859	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3971859-T	0.238	2E-7		0.017	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026276	79026277	rs3971859	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3971859-T	0.24	3E-7		0.082	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026277	79026278	rs3971860	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3971860-A	0.762	3E-7		0.017	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79026277	79026278	rs3971860	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs3971860-A	0.76	2E-7		0.082	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79026314	79026315	rs4886585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886585-A	0.307	1E-6		0.013	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026314	79026315	rs4886585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886585-A	0.31	1E-6		0.063	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026315	79026316	rs80162468	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs80162468-T	0.692	1E-6		0.013	unit increase	Illumina [NR] (imputed)	N
1187	chr15	79026315	79026316	rs80162468	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs80162468-T	0.689	1E-6		0.063	NR unit increase	Illumina [NR] (imputed)	N
1187	chr15	79026436	79026437	rs2869565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs2869565-G	0.458195978	1E-9		0.08334881	[0.056-0.11] unit decrease	Illumina [13427135] (imputed)	N
1187	chr15	79026495	79026496	rs2869566	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869566-T	0.379	2E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026495	79026496	rs2869566	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs2869566-T	0.38	2E-8		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026528	79026529	rs4887086	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887086-T	0.372	2E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026528	79026529	rs4887086	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887086-T	0.376	1E-6		0.055	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026540	79026541	rs4887087	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887087-T	0.376	3E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026540	79026541	rs4887087	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4887087-T	0.38	2E-8		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026673	79026674	rs4886586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886586-A	0.352	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026673	79026674	rs4886586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886586-A	0.355	1E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026821	79026822	rs4886587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886587-A	0.374	2E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79026821	79026822	rs4886587	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs4886587-A	0.377	9E-7		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1187	chr15	79027813	79027814	rs11072799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs11072799-T	NR	7E-17		0.0753	[0.058-0.093] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1187	chr15	79029722	79029723	rs2219939	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	15q25.1	ADAMTS7	rs2219939-?		2E-9				Affymetrix, Illumina [up to 2500000] (imputed)	N
1187	chr15	79033488	79033489	rs7176070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q25.1		rs7176070-C	NR	7E-10		0.0827	[0.056-0.109] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1188	chr15	79047434	79047435	rs12439049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q25.1		rs12439049-C	NR	2E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1188	chr15	79054107	79054108	rs12324886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q25.1		rs12324886-G	NR	2E-18		0.0761	[0.059-0.093] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1188	chr15	79055162	79055163	rs7168391	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	15q25.1		rs7168391-G	0.572398	4E-9		0.0443965	[0.031-0.058] decrease	Affymetrix [NR]	N
1188	chr15	79055162	79055163	rs7168391	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	15q25.1		rs7168391-G	0.571781	4E-9		0.0444051	[0.03-0.059] decrease	Affymetrix [NR]	N
1188	chr15	79056768	79056769	rs1809420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.1	ADAMTS7	rs1809420-T	0.582	2E-7	(AA, men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1188	chr15	79056768	79056769	rs1809420	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	15q25.1	ADAMTS7	rs1809420-T	0.582	1E-7	(AA, men)	0.059	[0.037-0.081] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1188	chr15	79057722	79057723	rs4243085	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q25.1	NR	rs4243085-C	0.7578	1E-8		0.0131	[0.0086-0.0176] unit decrease	NR [~ 27400000] (imputed)	N
1188	chr15	79058012	79058013	rs2929155	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	15q25.1	ADAMTS7	rs2929155-T	0.735	4E-6		0.0019	[0.00092-0.00288] unit decrease	Affymetrix [NR] (imputed)	N
1188	chr15	79058297	79058298	rs11630236	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q25.1		rs11630236-C	0.41	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
1188	chr15	79058950	79058951	rs28699256	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q25.1		rs28699256-C	0.45	2E-8		5.61	z score increase	Affymetrix [9061022] (imputed)	N
1188	chr15	79064666	79064667	rs7174367	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q25.1		rs7174367-G	0.42	1E-11		6.78	z score increase	Affymetrix [9061022] (imputed)	N
1188	chr15	79064666	79064667	rs7174367	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q25.1	NR	rs7174367-G	0.427	2E-10				NR [9056863] (imputed)	N
1188	chr15	79064666	79064667	rs7174367	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q25.1	NR	rs7174367-G	0.427	2E-8				NR [9056863] (imputed)	N
1188	chr15	79064666	79064667	rs7174367	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q25.1	ADAMTS7	rs7174367-A	0.573029	2E-12		0.00274396	[0.002-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
1188	chr15	79065170	79065171	rs3743063	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q25.1	NR	rs3743063-C	0.562	2E-11	(Conditioned on chr15:78243579, chr15:78836288, chr15:78812098, chr15:78911181, chr15:78906177, chr15:78849779, chr15:78908565, chr15:78814046)	0.016716857	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1188	chr15	79066652	79066653	rs57708073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q25.1		rs57708073-G	NR	2E-15		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1188	chr15	79069999	79070000	rs62012628	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q25.1	ADAMTS7	rs62012628-T	0.29	5E-12		0.238	[0.18-0.3] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1188	chr15	79070437	79070438	rs12907764	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12907764-A	0.641	2E-6		0.014	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79071094	79071095	rs12913260	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q25.1	NR	rs12913260-A	0.4	1E-10		1.11	[1.07-1.15]	Illumina [8468885] (imputed)	N
1188	chr15	79071094	79071095	rs12913260	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12913260-A	0.371	5E-8		0.015	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79071094	79071095	rs12913260	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12913260-A	0.374	7E-8		0.072	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79071405	79071406	rs2004038	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q25.1	ADAMTS7	rs2004038-A	0.418657783	4E-15		1.1474226	[1.108727515-1.187467979]	Illumina [10439017] (imputed)	N
1188	chr15	79071405	79071406	rs2004038	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs2004038-A	0.375	4E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79071405	79071406	rs2004038	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs2004038-A	0.377	2E-6		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79072099	79072100	rs112321636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs112321636-T	0.372	4E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79072099	79072100	rs112321636	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs112321636-T	0.375	2E-6		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79073999	79074000	rs35474770	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs35474770-A	0.622	4E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79073999	79074000	rs35474770	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs35474770-A	0.619	3E-6		0.056	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79074252	79074253	rs36061084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs36061084-A	0.398	2E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074252	79074253	rs36061084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs36061084-A	0.402	1E-6		0.064	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074293	79074294	rs4887109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4887109-T	0.367	9E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074293	79074294	rs4887109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4887109-T	0.37	2E-7		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074505	79074506	rs4886590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4886590-A	0.369	7E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074505	79074506	rs4886590	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4886590-A	0.371	2E-7		0.066	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79074517	79074518	rs4886591	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q25.1	ADAMTS7	rs4886591-A	0.447006685	1E-23		1.1780756	[1.140996523-1.216359618]	Illumina [10439017] (imputed)	N
1188	chr15	79074517	79074518	rs4886591	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q25.1	ADAMTS7	rs4886591-A	0.437091582	4E-34		1.1673486	[1.138622628-1.196799443]	Illumina [10439017] (imputed)	N
1188	chr15	79074517	79074518	rs4886591	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4886591-A	0.386	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79075334	79075335	rs10163145	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs10163145-A	0.371	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79075745	79075746	rs12050525	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12050525-T	0.622	5E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79075745	79075746	rs12050525	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12050525-T	0.618	3E-6		0.051	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79076703	79076704	rs2904220	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs2904220-T	0.378	1E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79077113	79077114	rs1825087	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs1825087-A	0.621	1E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79077877	79077878	rs11072803	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11072803-A	0.373	1E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79078357	79078358	rs11858210	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11858210-A	0.372	9E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79078485	79078486	rs11072804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11072804-T	0.629	9E-7		0.011	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79078517	79078518	rs11072805	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11072805-T	0.629	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79079073	79079074	rs11072806	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11072806-A	0.39	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79079511	79079512	rs12899147	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12899147-A	0.605	6E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79080233	79080234	rs1994016	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs1994016-T	0.367	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79080233	79080234	rs1994016	21239051	Reilly MP	2011-01-14	Lancet	Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies.	Coronary artery disease	1,808 European ancestry cases, 915 European ancestry controls	10,585 European ancestry cases, 6,468 European ancestry controls	15q25.1	ADAMTS7	rs1994016-C	0.60	5E-13		1.19	[1.13-1.24]	Affymetrix, Illumina [> 2400000] (imputed)	N
1188	chr15	79082546	79082547	rs4886592	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4886592-T	0.606	2E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79083375	79083376	rs2277546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs2277546-A	0.395	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79083590	79083591	rs2277545	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs2277545-T	0.605	1E-6		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79083813	79083814	rs11639044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11639044-T	0.404	1E-7		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79083813	79083814	rs11639044	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11639044-T	0.407	8E-7		0.049	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79084932	79084933	rs12903203	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12903203-T	0.605	8E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79085914	79085915	rs11631955	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11631955-A	0.596	7E-8		0.011	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79085914	79085915	rs11631955	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11631955-A	0.593	7E-7		0.048	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79086056	79086057	rs11632102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11632102-A	0.404	7E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79086056	79086057	rs11632102	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11632102-A	0.407	7E-7		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79089110	79089111	rs3825807	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	15q25.1	NR	rs3825807-A	0.57	2E-6		1.08	[1.05-1.11]	Affymetrix, Illumina [at least 119674] (imputed)	N
1188	chr15	79089110	79089111	rs3825807	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs3825807-A	0.604	4E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79089110	79089111	rs3825807	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs3825807-A	0.599	4E-6		0.043	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79089110	79089111	rs3825807	23561647	van Setten J	2013-03-13	Atherosclerosis	Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction.	Coronary artery calcification	2,620 European ancestry males	NA	15q25.1	ADAMTS7	rs3825807-A	0.57	7E-6		0.363	[0.21-0.52] unit increase	Illumina [2500000] (imputed)	N
1188	chr15	79089110	79089111	rs3825807	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	15q25.1	ADAMTS7	rs3825807-A	0.57	1E-12		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1188	chr15	79089733	79089734	rs7177699	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs7177699-T	0.409	2E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79089733	79089734	rs7177699	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs7177699-T	0.411	2E-6		0.044	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79090605	79090606	rs28610385	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs28610385-A	0.396	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79092182	79092183	rs11638321	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11638321-T	0.605	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79092182	79092183	rs11638321	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11638321-T	0.601	5E-6		0.043	NR unit increase	Illumina [NR] (imputed)	N
1188	chr15	79092749	79092750	rs7173267	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs7173267-C	0.397	3E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79093200	79093201	rs11634450	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11634450-A	0.603	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79094324	79094325	rs11856536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs11856536-A	0.603	3E-7		0.01	unit increase	Illumina [NR] (imputed)	N
1188	chr15	79095286	79095287	rs4887113	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	15q25.1		rs4887113-T	NR	7E-10		0.0164	[0.012-0.021] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1188	chr15	79095286	79095287	rs4887113	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	15q25.1		rs4887113-T	0.45	6E-38		0.012	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1188	chr15	79095286	79095287	rs4887113	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	15q25.1		rs4887113-T	0.4	3E-9		0.016	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1188	chr15	79095286	79095287	rs4887113	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4887113-T	0.408	6E-8		0.011	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79095286	79095287	rs4887113	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs4887113-T	0.412	1E-6		0.048	NR unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79095957	79095958	rs114189680	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	6,647 African American individuals	NA	15q25.1	ADAMTS7	rs114189680-T	0.0254	4E-7		0.1428	[0.086-0.199] unit decrease	Affymetrix, Illumina [26614666] (imputed)	N
1188	chr15	79099144	79099145	rs12592721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ADAMTS7	rs12592721-C	0.397	4E-7		0.01	unit decrease	Illumina [NR] (imputed)	N
1188	chr15	79111092	79111093	rs4380028	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	15q25.1	ADAMTS7, MORF4L1	rs4380028-C	0.65	4E-9		1.07	[1.05-1.10]	Illumina [574919]	N
1188	chr15	79114452	79114453	rs28455815	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	15q25.1	ADAMTS7, MORF4L1	rs28455815-T	0.54	1E-8		1.12	[1.08-1.16]	Illumina [5932413] (imputed)	N
1188	chr15	79117132	79117133	rs6495335	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q25.1	intergenic	rs6495335-T	0.6039	2E-30		0.0694	[0.058-0.081] unit increase	NR [8041861] (imputed)	N
1188	chr15	79123053	79123054	rs7164479	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	15q25.1	ADAMTS7	rs7164479-T	0.578	6E-18		1.07	[1.06-1.09]	Affymetrix [9149595] (imputed)	N
1188	chr15	79123337	79123338	rs7165042	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q25.1	ADAMTS7	rs7165042-C	0.56	3E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1188	chr15	79124474	79124475	rs4468572	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q25.1	ADAMTS7	rs4468572-C	0.585831	4E-16		1.08	[1.06- 1.10]	Affymetrix, Illumina [8600000] (imputed)	N
1188	chr15	79130423	79130424	rs7403155	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	15q25.1	ADAMTS7, MORF4L1	rs7403155-A	0.299885406	4E-7		1.1159655	[1.069432691-1.164522965]	Illumina [10439017] (imputed)	N
1188	chr15	79130558	79130558	rs199555119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q25.1		rs199555119-CA	NR	9E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1188	chr15	79132329	79132330	rs11072811	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	15q25.1	ADAMTS7, MORF4L1	rs11072811-C	0.492	1E-10				Affymetrix [28000000] (imputed)	N
1188	chr15	79132643	79132644	rs11632963	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	15q25.1	ADAMTS7, MORF4L1	rs11632963-A	0.505476	3E-9		1.07	[1.04-1.09]	NR [10903881] (imputed)	N
1188	chr15	79134260	79134261	rs62011027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q25.1		rs62011027-A	NR	2E-17		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1188	chr15	79136109	79136110	rs62011028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q25.1		rs62011028-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1188	chr15	79138999	79139000	rs11637783	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q25.1	intergenic	rs11637783-T	0.575	1E-30		0.074	[0.06-0.088] unit increase	Affymetrix [7947838] (imputed)	N
1188	chr15	79141783	79141784	rs7173743	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q25.1	MORF4L1	rs7173743-T	0.554427	2E-17		1.07	[1.05-1.08]	NR [8126035] (imputed)	N
1188	chr15	79141783	79141784	rs7173743	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q25.1	ADAMTS7, MORF4L1	rs7173743-?	NR	4E-44		0.0678739	[0.058-0.077] unit decrease	Illumina [4804024] (imputed)	N
1188	chr15	79141783	79141784	rs7173743	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q25.1	intergenic	rs7173743-T	0.5542	5E-36		0.0636	[0.054-0.074] unit increase	Affymetrix [at least 7947838] (imputed)	N
1188	chr15	79141783	79141784	rs7173743	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	15q25.1	ADAMTS7	rs7173743-?	NR	7E-8		1.0753	[1.05-1.11]	Illumina [575000] (imputed)	N
1188	chr15	79141856	79141856	rs143284856	31577861	Dai J	2019-10-31	Int J Cancer	Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.	Lung cancer	20,871 European ancestry cases, 15,971 European ancestry controls, 2,331 Chinese ancestry cases, 3,077 Chinese ancestry controls	NA	15q25.1	MORF4L1	rs143284856-TT	0.47	1E-12		1.11	[1.08-1.14]	Illumina [484196]	N
1188	chr15	79152266	79152266	rs35745826	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.1	MORF4L1	rs35745826-ACT	0.842	3E-12		0.2349	[0.17-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1188	chr15	79156982	79156983	rs62011052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.1	ADAMTS7, MORF4L1	rs62011052-T		2E-8		0.283	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1188	chr15	79156982	79156983	rs62011052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.1	ADAMTS7, MORF4L1	rs62011052-T		2E-7	(EA)	0.292	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1188	chr15	79156982	79156983	rs62011052	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q25.1	ADAMTS7, MORF4L1	rs62011052-T		3E-15		0.28	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1189	chr15	79185179	79185180	rs28408315	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q25.1	MORF4L1	rs28408315-G	0.7325735959999999	4E-8		1.0970801	[1.06-1.13]	Illumina [10439017] (imputed)	N
1189	chr15	79185179	79185180	rs28408315	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q25.1	MORF4L1	rs28408315-G	0.723971126	4E-12		1.0961882	[1.07-1.13]	Illumina [10439017] (imputed)	N
1189	chr15	79185179	79185180	rs28408315	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	15q25.1	MORF4L1	rs28408315-G	0.722689505	3E-9		1.1153598	[1.08-1.16]	Illumina [10439017] (imputed)	N
1189	chr15	79207465	79207466	rs59772922	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	15q25.1	CTSH	rs59772922-A	0.83	1E-8		1.09		Illumina [161311]	N
1189	chr15	79224682	79224683	rs2289700	21771265	Yosifova A	2011-07-19	Genes Brain Behav	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	15q25.1	CTSH	rs2289700-A	0.07	9E-6		2.13	[1.53-2.95]	Illumina [497732]	N
1189	chr15	79228370	79228371	rs8034542	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,340 Icelandic ancestry individuals	NA	15q25.1		rs8034542-G	0.1025	1E-11		0.198105	[0.14-0.26] unit decrease	Illumina [7506463] (imputed)	N
1189	chr15	79229198	79229199	rs12592898	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	CTSH	rs12592898-G	0.9015625	5E-166	(CTSH, 8465_52_3)	1.1006	[1.03-1.17] unit increase	Illumina [> 1000000] (imputed)	N
1189	chr15	79231004	79231005	rs78813423	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	NR	rs78813423-C	0.088	1E-11	(Cathepsin H, CTSH.8465.52.3)	0.3	[0.22-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1189	chr15	79231045	79231046	rs62013227	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	NR	rs62013227-T	0.086	7E-43	(Cathepsin H, CTSH.8465.52.3)	0.59	[0.51-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1189	chr15	79234469	79234470	rs34843303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q25.1		rs34843303-C	NR	5E-13		0.0234	[0.017-0.03] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1189	chr15	79234956	79234957	rs34593439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	15q25.1	NR	rs34593439-A	NR	1E-10		0.0264	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1189	chr15	79234956	79234957	rs34593439	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	15q25.1	CTSH	rs34593439-?	0.15	1E-11		1.3066771		Illumina [252970]	N
1189	chr15	79234956	79234957	rs34593439	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	15q25.1	CTSH	rs34593439-A		2E-6		1.1450393		Illumina [252970]	N
1189	chr15	79234956	79234957	rs34593439	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	15q25.1	CTSH	rs34593439-A	NA	1E-14				Illumina [252970]	N
1189	chr15	79234956	79234957	rs34593439	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	CTSH	rs34593439-A	0.111	3E-241	(Cathepsin H, CTSH.8465.52.3)	1.15	[1.09-1.21] unit decrease	Affymetrix [10572788] (imputed)	N
1189	chr15	79234956	79234957	rs34593439	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	15q25.1	CTSH	rs34593439-G	0.9	9E-14		1.2820514		Illumina [135870]	N
1189	chr15	79235445	79235446	rs3825932	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	15q25.1	CTSH	rs3825932-?	NR	8E-8				Affymetrix, Illumina [841622] (imputed)	N
1189	chr15	79235445	79235446	rs3825932	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	15q25.1	CTSH	rs3825932-T	0.68	3E-15		1.16	[1.10-1.22]	Affymetrix [up to 335565]	N
1189	chr15	79237292	79237293	rs2289702	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q25.1	CTSH	rs2289702-T	0.1	4E-11		6.61	z-score increase	Affymetrix [4314223] (imputed)	N
1189	chr15	79237292	79237293	rs2289702	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	15q25.1	CTSH	rs2289702-T	NR	2E-7		1.07	[1.05-1.10]	Affymetrix [7600000] (imputed)	N
1189	chr15	79237292	79237293	rs2289702	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	15q25.1	CTSH	rs2289702-T	0.109994	3E-9		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1189	chr15	79237292	79237293	rs2289702	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	15q25.1	CTSH	rs2289702-?	NR	1E-9		1.34	[1.18-1.52]	Illumina [111240]	N
1189	chr15	79246165	79246166	rs62013235	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,340 Icelandic ancestry individuals	NA	15q25.1		rs62013235-A	0.09238	5E-34		0.3667	[0.31-0.43] unit increase	Illumina [7506463] (imputed)	N
1189	chr15	79246341	79246342	rs7177831	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	CTSH	rs7177831-A	0.819375	4E-212	(CTSH, 8644_46_3)	0.9109655	[0.86-0.96] unit decrease	Illumina [> 1000000] (imputed)	N
1189	chr15	79247481	79247482	rs62013236	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q25.1	CTSH	rs62013236-C	NR	9E-17		1.106	NR	Affymetrix, Illumina [8278136] (imputed)	N
1189	chr15	79249548	79249549	rs75508148	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,365 Icelandic ancestry individuals	NA	15q25.1		rs75508148-G	0.03271	4E-81		1.00354	[0.9-1.11] unit increase	Illumina [7506463] (imputed)	N
1189	chr15	79260942	79260943	rs28582793	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	15q25.1	RASGRF1	rs28582793-A	NR	6E-7		4.977	NR z score decrease	Illumina [8978282] (imputed)	N
1189	chr15	79274045	79274046	rs3743200	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	15q25.1	RASGRF1	rs3743200-A	0.27	2E-6		0.16	[0.10-0.22] unit increase	Illumina [~ 318327]	N
1190	chr15	79372874	79372875	rs4778879	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	15q25.1	RASGRF1	rs4778879-G	0.44	4E-11		0.102	[0.073-0.131] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1190	chr15	79375346	79375347	rs6495367	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q25.1	RASGRF1	rs6495367-A	0.4075	2E-24		10.202	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1190	chr15	79375346	79375347	rs6495367	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q25.1	RASGRF1	rs6495367-A	0.46	4E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
1190	chr15	79375346	79375347	rs6495367	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	15q25.1	RASGRF1	rs6495367-A	0.42	5E-6	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1190	chr15	79378774	79378775	rs13380109	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	15q25.1	NR	rs13380109-?	NR	7E-9		0.103178	[0.068-0.138] unit decrease	NR [13958389] (imputed)	N
1190	chr15	79378820	79378821	rs13380104	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q25.1	NR	rs13380104-T	0.4178	3E-12		0.0937	[0.067-0.12] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1190	chr15	79378820	79378821	rs13380104	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	15q25.1	RASGRF1	rs13380104-?	NR	4E-18		1.066	[1.051-1.082]	Illumina [13762925] (imputed)	N
1190	chr15	79379491	79379492	rs1007365	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	15q25.1	RASGFRF1, ANKRD34C	rs1007365-?	0.42	1E-9		1.1828623	[1.12-1.25]	Affymetrix [NR] (imputed)	N
1190	chr15	79380515	79380516	rs1961579	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	15q25.1	NR	rs1961579-G		3E-37		0.14	[0.12-0.16] unit increase	NR [NR]	N
1190	chr15	79380515	79380516	rs1961579	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q25.1	CHRNA3, CHRNB4, ADAMTS7, MORF4L1, RASGRF1	rs1961579-?		8E-84				Affymetrix, Illumina [NR] (imputed)	N
1190	chr15	79380515	79380516	rs1961579	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q25.1	NR	rs1961579-A	0.4206	2E-9	(EA)	0.0895	[0.06-0.119] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1190	chr15	79384849	79384850	rs28415942	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	15q25.1	RASGRF1	rs28415942-T	0.54	7E-10		1.26	NR	Affymetrix, Illumina [4996193] (imputed)	N
1190	chr15	79403001	79403002	rs57488047	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q25.1	RASGRF1	rs57488047-T	0.5316	1E-12		0.00986083	[0.0071-0.0126] unit increase	Affymetrix [12370749]	N
1190	chr15	79403584	79403585	rs2870111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q25.1		rs2870111-T	NR	4E-12		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1190	chr15	79408931	79408932	rs8030485	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	15q25.1	NR	rs8030485-A	0.6146	3E-6		0.0088	[0.0051-0.0125] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1190	chr15	79412398	79412399	rs1521624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q25.1		rs1521624-A	NR	1E-11		0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1190	chr15	79412398	79412399	rs1521624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q25.1		rs1521624-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1190	chr15	79412398	79412399	rs1521624	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q25.1	RASGRF1	rs1521624-A	0.4716	4E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1191	chr15	79441026	79441027	rs1915724	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	15q25.1	NR	rs1915724-?	NR	7E-10		0.167022	[0.11-0.22] unit increase	NR [13958389] (imputed)	N
1191	chr15	79441026	79441027	rs1915724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q25.1	NR	rs1915724-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1191	chr15	79451868	79451869	rs939658	20835236	Hysi PG	2010-09-12	Nat Genet	A genome-wide association study for myopia and refractive error identifies a susceptibility locus at 15q25.	Refractive error	4,270 European ancestry individuals	13,414 European ancestry individuals	15q25.1	RASGRF1	rs939658-G	0.52	2E-9		0.15	[0.10-0.20] diopter decrease	Illumina [~ 2200000] (imputed)	N
1191	chr15	79454076	79454077	rs74485555	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	15q25.1	NR	rs74485555-?	NR	2E-13		0.156713	[0.11-0.2] unit increase	NR [13958389] (imputed)	N
1191	chr15	79454076	79454077	rs74485555	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	15q25.1	NR	rs74485555-?	NR	6E-6		0.0782103	[0.044-0.112] unit increase	NR [13958389] (imputed)	N
1191	chr15	79463035	79463036	rs8038464	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q25.1	NA	rs8038464-A	0.397	2E-13		0.0127	[0.0094-0.016] unit decrease	NR [~ 27400000] (imputed)	N
1191	chr15	79463846	79463847	rs1474256	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	15q25.1	RASGRF1, LOC729911	rs1474256-G	0.49	6E-6	(Dominant model)	1.2048	[NR]	Illumina [1795103]	N
1191	chr15	79465548	79465549	rs8041222	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	15q25.1	NA	rs8041222-A	0.4106	1E-11		0.0132	[0.0095-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
1191	chr15	79480470	79480470	rs34148597	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q25.1	Intergenic	rs34148597-?	NR	1E-7	(men)	0.025694	[0.016-0.035] unit increase	Illumina [13520550] (imputed)	N
1191	chr15	79501866	79501867	rs12324079	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q25.1	ANKRD34C-AS1	rs12324079-?	NA	2E-10		1.54	[1.07-2.01] unit decrease	Affymetrix [5541230] (imputed)	N
1191	chr15	79533371	79533372	rs4779031	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q25.1	NR	rs4779031-C	0.211701583145561	2E-6	(IGP4)	0.1832	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1191	chr15	79552378	79552379	rs8025118	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	15q25.1	LOC729911	rs8025118-T	0.141	3E-6	(Semantic Fluency)	2.8961	[1.69-4.11] unit increase	Affymetrix [> 371951] (imputed)	N
1192	chr15	79576140	79576141	rs12438338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	KIAA1024	rs12438338-?	NR	6E-6	(TAG 44:1)	0.28675112	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr15	79576140	79576141	rs12438338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	KIAA1024	rs12438338-?	NR	5E-6	(TAG 48:2)	0.29022554	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr15	79576140	79576141	rs12438338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	KIAA1024	rs12438338-?	NR	4E-6	(TAG 46:1)	0.2946127	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr15	79576140	79576141	rs12438338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	KIAA1024	rs12438338-?	NR	2E-6	(TAG 46:2)	0.30433744	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr15	79576140	79576141	rs12438338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	KIAA1024	rs12438338-?	NR	1E-6	(TAG 48:3)	0.30750164	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr15	79650516	79650517	rs62025977	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	15q25.1	TMED3	rs62025977-?	NR	3E-6	(East and South Asian)			NR [at least 880000]	N
1192	chr15	79659612	79659613	rs1979967	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	15q25.1	NR	rs1979967-C		9E-7		0.1402	[0.084-0.196] SD units decrease	NR [10700000] (imputed)	N
1193	chr15	79719160	79719161	rs769761	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q25.1	NR	rs769761-?		7E-6				Illumina [4322238] (imputed)	N
1193	chr15	79741390	79741391	rs76395525	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q25.1	NR	rs76395525-G	NR	1E-6		0.5277	[0.32-0.74] SD units decrease	NR [10700000] (imputed)	N
1193	chr15	79819510	79819511	rs4377117	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		15q25.1	NR	rs4377117-G	0.779477	2E-6		1.08073	[1.04496-1.11771]	Affymetrix [16499239] (imputed)	N
1194	chr15	79840556	79840557	rs4464040	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q25.1	NR	rs4464040-C	0.850292	3E-16		0.0144835	[0.011-0.018] unit increase	Affymetrix [16578495] (imputed)	N
1194	chr15	79840556	79840557	rs4464040	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q25.1	NR	rs4464040-C	0.850331	4E-32		0.0445846	[0.037-0.052] unit increase	Affymetrix [16580851] (imputed)	N
1194	chr15	79840609	79840610	rs62025136	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	15q25.1	NR	rs62025136-C	NR	3E-7		0.0114169	[0.007-0.0158] unit decrease	Affymetrix [9740198] (imputed)	N
1194	chr15	79850182	79850183	rs62025141	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q25.1	NR	rs62025141-A	0.855415	1E-13		0.0263429	[0.019-0.034] unit increase	Affymetrix [16585745] (imputed)	N
1194	chr15	79855128	79855129	rs3120637	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	15q25.1	NR	rs3120637-C	0.467914	1E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1194	chr15	79863484	79863485	rs994965583	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	15q25.1	ANKRD34C	rs994965583-G	0.2979	2E-7		6.252		Affymetrix [757439]	N
1194	chr15	79927593	79927594	rs7177026	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q25.1	NR	rs7177026-?	NR	3E-6	(Japanese)	0.1442	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1194	chr15	79945415	79945416	rs141981327	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	15q25.1	NR	rs141981327-G	NR	9E-6		0.5	[0.27-0.73] SD units decrease	NR [10700000] (imputed)	N
1195	chr15	79966599	79966600	rs8041943	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	15q25.1	intergenic	rs8041943-?		2E-6	(East Asian)			Affymetrix [702413]	N
1195	chr15	79973054	79973055	rs3893384	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (spine) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females		intergenic	rs3893384-?		1E-6	(East Asian)			Affymetrix [702413]	N
1195	chr15	79975646	79975647	rs4778720	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	15q25.1	intergenic	rs4778720-?	0.442	2E-6		1.46	[NR]	Illumina [3922209] (imputed)	N
1195	chr15	79989185	79989186	rs12591436	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	15q25.1	Intergenic	rs12591436-G	0.34	6E-6		0.18	[0.10-0.26] unit increase	NR [~ 38000000] (imputed)	N
1195	chr15	80013421	80013422	rs2692194	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q25.1	NR	rs2692194-G	0.626112833558255	9E-6	(IGP12)	0.1502	[0.084-0.217] unit decrease	Illumina [~ 2500000] (imputed)	N
1195	chr15	80069761	80069762	rs166870	25867717	Song N	2015-04-13	PLoS One	Prediction of breast cancer survival using clinical and genetic markers by tumor subtypes.	Disease-free survival in breast cancer	1,732 Korean ancestry cases	1,494 Korean ancestry cases	15q25.1	MTHFS	rs166870-T	0.13	3E-7	(HR+ HER2-)	2.3	[1.67-3.15]	Affymetrix [2210580] (imputed)	N
1195	chr15	80080306	80080307	rs1074390	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	15q25.1	MTHFS, ST20	rs1074390-G	0.412	2E-6		1.12	[1.07-1.17]	Illumina [5790508] (imputed)	N
1196	chr15	80089631	80089632	rs74532386	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	15q25.1	MTHFS	rs74532386-G	0.02	5E-6	(adjusted for severity)	2.36	[1.99-2.73]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1196	chr15	80089631	80089632	rs74532386	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	NR	rs74532386-G	0.024	7E-12	(5-formyltetrahydrofolate cyclo-ligase, MTHFS.14107.1.3)	0.56	[0.4-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
1196	chr15	80099088	80099089	rs34903151	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q25.1	NR	rs34903151-?	NR	4E-6		3.0052	[1.74-4.27] unit increase	Illumina [5779266] (imputed)	N
1196	chr15	80099088	80099089	rs34903151	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q25.1	NR	rs34903151-?	NR	3E-6		3.0052	[1.74-4.27] unit increase	Illumina [5779266] (imputed)	N
1196	chr15	80102031	80102032	rs656900	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	15q25.1	KIAA1024, MTHFS	rs656900-C	0.324	8E-6		0.031	[0.017-0.045] unit decrease	Illumina [7358575] (imputed)	N
1196	chr15	80127912	80127913	rs35144922	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	MTHFS	rs35144922-T	0.69296875	6E-35	(MTHFS, 14107_1_3)	0.32247788	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
1196	chr15	80130201	80130202	rs4779164	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MTHFS	5,363 Icelandic ancestry individuals	NA	15q25.1		rs4779164-A	0.3117	2E-55		0.308348	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
1196	chr15	80141805	80141806	rs36060920	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q25.1	MTHFS, ST20-MTHFS	rs36060920-?		8E-6				Illumina [4322238] (imputed)	N
1196	chr15	80150436	80150437	rs586023	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	ST20	rs586023-?	NR	8E-6	(asymmetric dimethylarginine)	0.67305094	[0.38-0.97] unit increase	Affymetrix [at least 2500000] (imputed)	N
1196	chr15	80150436	80150437	rs586023	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.1	ST20	rs586023-?	NR	2E-6	(NG monomethyl arginine)	0.7197639	[0.43-1.01] unit increase	Affymetrix [at least 2500000] (imputed)	N
1196	chr15	80174387	80174388	rs2562744	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	15q25.1	MTHFS	rs2562744-?	0.41	6E-6	(model 2)	0.146	NR unit decrease	Illumina [628376]	N
1196	chr15	80189229	80189230	rs200058464	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MTHFS	5,363 Icelandic ancestry individuals	NA	15q25.1		rs200058464-A	0.01538	3E-24		0.780239	[0.63-0.93] unit decrease	Illumina [7506463] (imputed)	N
1196	chr15	80189522	80189523	rs2903105	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MTHFS	5,363 Icelandic ancestry individuals	NA	15q25.1		rs2903105-C	0.3819	2E-31		0.223308	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
1196	chr15	80189804	80189805	rs3826008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q25.1	ST20-MTHFS	rs3826008-T	0.567048	4E-37		0.028542342	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1196	chr15	80189804	80189805	rs3826008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q25.1	ST20-MTHFS	rs3826008-T	0.567031	6E-41		0.030212872	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1196	chr15	80191279	80191280	rs184575290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.1	ST20	rs184575290-A	0.00334000000000001	4E-22		0.20747443	[0.17-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1196	chr15	80191279	80191280	rs184575290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q25.1	ST20	rs184575290-A	0.00333799999999995	1E-26		0.22933084	[0.19-0.27] unit increase	Affymetrix [93095623] (imputed)	N
1196	chr15	80191337	80191338	rs139874813	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	15q25.1		rs139874813-?	NR	1E-15		0.174073	[0.13-0.22] unit decrease	NR [9800000] (imputed)	N
1196	chr15	80191337	80191338	rs139874813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.1	ST20	rs139874813-G	0.00212500000000004	2E-11		0.16281006	[0.12-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1196	chr15	80191337	80191338	rs139874813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q25.1	ST20	rs139874813-G	0.00212000000000001	6E-12		0.1659051	[0.12-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1196	chr15	80191342	80191343	rs7257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs7257-A	0.527643	4E-64				Affymetrix, Illumina [19872809] (imputed)	N
1196	chr15	80191342	80191343	rs7257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q25.1	NR	rs7257-A	0.567153	4E-63		0.033603	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1196	chr15	80191342	80191343	rs7257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q25.1		rs7257-?	NR	6E-47				NR [~ 8900000] (imputed)	N
1196	chr15	80192974	80192975	rs36035742	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q25.1	ST20, MTHFS	rs36035742-T	0.05	4E-6	(Age 20-60 years)	0.1239	[0.072-0.176] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1196	chr15	80194246	80194247	rs2115536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	15q25.1	ST20-MTHFS, ST20	rs2115536-T	0.5663	5E-16		0.02921828	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1196	chr15	80194246	80194247	rs2115536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	15q25.1	ST20-MTHFS, ST20	rs2115536-T	0.5661	2E-12		0.02550686	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1196	chr15	80194246	80194247	rs2115536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q25.1	ST20-MTHFS, ST20	rs2115536-T	0.5663	2E-15		0.0284936	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1196	chr15	80194246	80194247	rs2115536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	15q25.1	ST20-MTHFS, ST20	rs2115536-T	0.5662	3E-14		0.02740767	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1196	chr15	80194246	80194247	rs2115536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	15q25.1	ST20-MTHFS, ST20	rs2115536-T	0.5663	6E-18		0.03111211	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1196	chr15	80194479	80194480	rs2163005	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	15q25.1		rs2163005-T	0.584	6E-25				Affymetrix [10369434] (imputed)	N
1196	chr15	80210850	80210851	rs4778734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q25.1		rs4778734-G	NR	5E-30		0.0188	[0.016-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1196	chr15	80211690	80211691	rs7173566	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	MTHFS	rs7173566-C	0.343	6E-16	(5-formyltetrahydrofolate cyclo-ligase, MTHFS.14107.1.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1196	chr15	80214290	80214291	rs57141546	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	NR	rs57141546-T	0.347	7E-16	(5-formyltetrahydrofolate cyclo-ligase, MTHFS.14107.1.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1197	chr15	80219592	80219593	rs75598935	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	15q25.1	C15orf37	rs75598935-A	0.02	6E-6	(Age 20-60 years)	0.1721	[0.098-0.246] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1197	chr15	80222571	80222572	rs12916091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q25.1	intergenic	rs12916091-G	0.563	2E-27		0.03899083	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80222571	80222572	rs12916091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	15q25.1	intergenic	rs12916091-G	0.563	2E-32		0.04281802	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80222571	80222572	rs12916091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q25.1	intergenic	rs12916091-G	0.563	9E-20		0.03284244	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80224816	80224817	rs11854390	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q25.1		rs11854390-C	0.436	1E-33				Affymetrix [10369434] (imputed)	N
1197	chr15	80224816	80224817	rs11854390	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	15q25.1		rs11854390-C	0.436	4E-18				Affymetrix [10369434] (imputed)	N
1197	chr15	80224816	80224817	rs11854390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.1		rs11854390-T	0.563654	6E-44		0.031356502	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr15	80224816	80224817	rs11854390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q25.1		rs11854390-C	0.436357	8E-58		0.036121406	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1197	chr15	80224816	80224817	rs11854390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q25.1	NR	rs11854390-T	0.562198	2E-13		0.013665	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1197	chr15	80232538	80232539	rs2586172	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q25.1		rs2586172-T	0.261	1E-9				Affymetrix [10369434] (imputed)	N
1197	chr15	80233398	80233399	rs12102032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	15q25.1		rs12102032-A	0.3935	4E-9		0.0692	[0.046-0.092] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1197	chr15	80255208	80255209	rs2562754	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	15q25.1		rs2562754-C	0.236	3E-10				Affymetrix [10369434] (imputed)	N
1197	chr15	80255208	80255209	rs2562754	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	15q25.1	BCL2A1	rs2562754-T	0.7625	3E-16		0.03431283	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80259073	80259074	rs7180804	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer %Natural Killer	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs7180804-A	0.21603	9E-17		0.2525	[0.19-0.31] unit decrease	Illumina [18380873] (imputed)	N
1197	chr15	80259073	80259074	rs7180804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs7180804-A	0.246291	3E-294				Affymetrix, Illumina [23467995] (imputed)	N
1197	chr15	80259073	80259074	rs7180804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q25.1	NR	rs7180804-A	0.256783	2E-286		0.077442	[0.073-0.082] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1197	chr15	80259159	80259167	rs147934515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	15q25.1	BCL2A1	rs147934515-A	0.2585	2E-13		0.02997775	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80259159	80259167	rs147934515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q25.1	BCL2A1	rs147934515-A	0.2584	3E-14		0.03091218	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80259159	80259167	rs147934515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	15q25.1	BCL2A1	rs147934515-A	0.2584	2E-18		0.03572108	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80260013	80260014	rs8026803	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q25.1		rs8026803-T	0.74	3E-83				Affymetrix [10369434] (imputed)	N
1197	chr15	80260013	80260014	rs8026803	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	15q25.1		rs8026803-T	0.74	4E-87				Affymetrix [10369434] (imputed)	N
1197	chr15	80260013	80260014	rs8026803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q25.1	BCL2A1	rs8026803-C	0.260898	4E-209		0.07820342	[0.073-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr15	80260013	80260014	rs8026803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q25.1	BCL2A1	rs8026803-C	0.260809	9E-22		0.024238013	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr15	80260013	80260014	rs8026803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q25.1	BCL2A1	rs8026803-C	0.260784	4E-21		0.024571298	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr15	80260272	80260273	rs8025803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs8025803-T	0.17496	2E-15		0.2666	[0.2-0.33] unit decrease	Illumina [18377392] (imputed)	N
1197	chr15	80260272	80260273	rs8025803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer  %CD3- lymphocyte	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs8025803-T	0.17466	4E-16		0.2729	[0.21-0.34] unit decrease	Illumina [18380873] (imputed)	N
1197	chr15	80260274	80260275	rs76648483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q25.1		rs76648483-T	NR	1E-148		0.0688	[0.064-0.074] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1197	chr15	80260274	80260275	rs76648483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.1	BCL2A1	rs76648483-T	0.256381	7E-197		0.07655585	[0.072-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr15	80260274	80260275	rs76648483	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q25.1	BCL2A1	rs76648483-T	0.2568	6E-97		0.08518855	[0.077-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80260274	80260275	rs76648483	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q25.1	BCL2A1	rs76648483-T	0.2569	2E-70		0.07256082	[0.065-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80260871	80260872	rs67760360	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b- Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs67760360-A	0.22114	2E-19		0.3414	[0.27-0.41] unit decrease	Illumina [17203588] (imputed)	N
1197	chr15	80263216	80263217	rs3826007	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b- %CD33dim HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs3826007-T	0.22094	4E-18		0.3541	[0.28-0.43] unit decrease	Illumina [17203588] (imputed)	N
1197	chr15	80263216	80263217	rs3826007	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b+ %CD33dim HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs3826007-T	0.22094	7E-19		0.361	[0.28-0.44] unit increase	Illumina [17203588] (imputed)	N
1197	chr15	80263216	80263217	rs3826007	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14- CD16+ monocyte %monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q25.1		rs3826007-T	0.21356	5E-9		0.1739	[0.12-0.23] unit decrease	Illumina [18224179] (imputed)	N
1197	chr15	80263716	80263717	rs72630421	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	15q25.1		rs72630421-C	0.98	1E-15				Affymetrix [10369434] (imputed)	N
1197	chr15	80263716	80263717	rs72630421	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	15q25.1		rs72630421-C	0.98	6E-13				Affymetrix [10369434] (imputed)	N
1197	chr15	80263716	80263717	rs72630421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q25.1	BCL2A1	rs72630421-T	0.019904	2E-9		0.05056483	[0.034-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr15	80267394	80267395	rs117424492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q25.1		rs117424492-C	NR	2E-9		0.0291	[0.02-0.039] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1197	chr15	80267394	80267395	rs117424492	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	15q25.1	BCL2A1, ZFAND6	rs117424492-?	NR	3E-8		0.03434	[0.022-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1197	chr15	80267480	80267481	rs117072053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q25.1		rs117072053-T	NR	2E-20		0.0344	[0.027-0.042] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1197	chr15	80267480	80267481	rs117072053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	15q25.1		rs117072053-T	0.297252	2E-20		0.0343548	[0.027-0.042] unit increase	Illumina [13479091] (imputed)	N
1197	chr15	80267480	80267481	rs117072053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	15q25.1		rs117072053-T	0.295584	7E-14		0.0363635	[0.027-0.046] unit increase	Illumina [13470073] (imputed)	N
1197	chr15	80267480	80267481	rs117072053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	15q25.1	NR	rs117072053-C	0.702435	1E-9		0.031897	[0.022-0.042] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
1197	chr15	80267480	80267481	rs117072053	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	15q25.1	BCL2A1, ZFAND6	rs117072053-?	NR	2E-10		0.03985	[0.028-0.052] unit increase novel	Illumina [6108953] (imputed)	N
1197	chr15	80267500	80267501	rs11632488	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	15q25.1	BCL2A1	rs11632488-G	0.24	1E-6		1.18	[1.10-1.26]	Affymetrix, Illumina [7891602] (imputed)	N
1197	chr15	80270630	80270631	rs62025494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	15q25.1		rs62025494-T	0.208488	9E-9		0.0310737	[0.02-0.042] unit decrease	Illumina [13471440] (imputed)	N
1197	chr15	80271999	80272000	rs11631974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	15q25.1	NR	rs11631974-G	0.789322	1E-12		0.041722	[0.03-0.053] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1197	chr15	80273876	80273877	rs59666047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	15q25.1		rs59666047-A	0.292594	2E-9		0.0292448	[0.02-0.039] unit increase	Illumina [13471431] (imputed)	N
1197	chr15	80275039	80275040	rs17287997	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	15q25.1		rs17287997-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1197	chr15	80276377	80276378	rs59631876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs59631876-C	0.937229	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
1197	chr15	80276377	80276378	rs59631876	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	15q25.1	NR	rs59631876-C	0.711009	5E-19		0.036326	[0.028-0.044] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1197	chr15	80279343	80279344	rs3915470	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	15q25.1	BCL2A1, ZFAND6	rs3915470-?	NR	3E-16		0.04011	[0.03-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1197	chr15	80346780	80346781	rs34483751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	15q25.1	intergenic	rs34483751-A	0.6368	1E-10		0.02428426	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr15	80346780	80346781	rs34483751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	15q25.1	intergenic	rs34483751-A	0.6368	8E-12		0.02586678	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1198	chr15	80363252	80363253	rs4778581	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	15q25.1	ZFAND6	rs4778581-T	0.6486	3E-12		0.02659047	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1198	chr15	80363252	80363253	rs4778581	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	15q25.1	ZFAND6	rs4778581-T	0.6486	8E-14		0.02843316	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1198	chr15	80383080	80383081	rs939974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q25.1	ZFAND6	rs939974-G	0.645254	4E-17		0.019713355	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr15	80383978	80383979	rs201061212	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	15q25.1		rs201061212-TA	NR	1E-6	(GLM)	0.2113	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1198	chr15	80397498	80397499	rs1533857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q25.1		rs1533857-T	0.25	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
1198	chr15	80398897	80398898	rs10851925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	15q25.1	ZFAND6	rs10851925-A	0.64173	2E-24		0.023830071	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr15	80398897	80398898	rs10851925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	15q25.1	ZFAND6	rs10851925-A	0.641725	2E-28		0.02584453	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr15	80398897	80398898	rs10851925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	15q25.1	ZFAND6	rs10851925-A	0.641796	2E-29		0.0261962	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr15	80398897	80398898	rs10851925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	15q25.1	ZFAND6	rs10851925-A	0.641796	3E-33		0.02794908	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1198	chr15	80432221	80432222	rs11634397	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	15q25.1	ZFAND6	rs11634397-G		2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [2426886] (imputed)	N
1198	chr15	80444922	80444923	rs868712158	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.1	NR	rs868712158-A	0.0122	4E-9	(EMILIN2)	0.1758	NR unit increase	Illumina [1671387] (imputed)	N
1198	chr15	80447910	80447911	rs28561542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q25.1	NR	rs28561542-C	0.551285	1E-10		0.012568	[0.0088-0.0164] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1198	chr15	80472525	80472526	rs11555096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAH	5,352 Icelandic ancestry individuals	NA	15q25.1		rs11555096-T	0.01909	4E-246		2.09516	[1.97-2.22] unit decrease	Illumina [7506463] (imputed)	N
1198	chr15	80472525	80472526	rs11555096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.1	NR	rs11555096-T	0.01916	1E-8	(FAH)	1.107	NR unit decrease	Illumina [1671387] (imputed)	N
1198	chr15	80472525	80472526	rs11555096	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	FAH	rs11555096-C	0.97921875	4E-75	(FAH, 11424_4_3)	1.5176964	[1.36-1.68] unit increase	Illumina [> 1000000] (imputed)	N
1198	chr15	80472525	80472526	rs11555096	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	FAH	rs11555096-T	0.021	2E-121	(Fumarylacetoacetase, FAH.11424.4.3)	1.88	[1.72-2.04] unit decrease	Affymetrix [10572788] (imputed)	N
1199	chr15	80512514	80512515	rs72740088	30655502	Levey DF	2019-01-17	Transl Psychiatry	Genetic associations with suicide attempt severity and genetic overlap with major depression.	Suicide attempt severity	2,439 European ancestry individuals, 3,881 African American individuals	9,382 European ancestry individuals, 1,488 African American individuals, 2,963 Latino individuals	15q25.1	NR	rs72740088-T	NR	8E-7				Illumina [at least 550601] (imputed)	N
1199	chr15	80512514	80512515	rs72740088	30655502	Levey DF	2019-01-17	Transl Psychiatry	Genetic associations with suicide attempt severity and genetic overlap with major depression.	Suicide attempt severity	2,439 European ancestry individuals, 3,881 African American individuals	9,382 European ancestry individuals, 1,488 African American individuals, 2,963 Latino individuals	15q25.1	NR	rs72740088-T	0.08	2E-9	(AA)	5.379	Z-score decrease (Discovery)	Illumina [at least 550601] (imputed)	N
1199	chr15	80539597	80539598	rs990225	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	15q25.1	CTXND1, LINC01314	rs990225-T	0.71	8E-7		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [6523511] (imputed)	N
1199	chr15	80553726	80553727	rs150456959	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	15q25.1	LINC00927	rs150456959-T	0.0031	8E-6		0.28696	NR	Affymetrix, Illumina [30341632] (imputed)	N
1199	chr15	80599535	80599536	rs141668138	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	15q25.1	LOC283688	rs141668138-A	0.01	7E-7		0.302	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1200	chr15	80669351	80669352	rs115620807	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q25.1	intergenic	rs115620807-?	NR	7E-6		0.25	[0.11-0.39] unit decrease	Illumina [at least 13000000] (imputed)	N
1200	chr15	80672309	80672310	rs35187631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q25.1		rs35187631-C	NR	7E-10		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1200	chr15	80672932	80672933	rs8042361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.1		rs8042361-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1200	chr15	80675243	80675244	rs7162556	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	15q25.1	Intergenic	rs7162556-A	0.1	4E-8	(Men, Overweight/Obese)	72.0	[46-97] kcals decrease	Affymetrix, Illumina [NR] (imputed)	N
1200	chr15	80676924	80676925	rs12908004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	15q25.1		rs12908004-G	NR	2E-10		0.0823	[0.057-0.108] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1200	chr15	80676924	80676925	rs12908004	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q25.1	ARNT2	rs12908004-G	0.164	4E-16		1.08	[1.06-1.10]	Illumina [34740186] (imputed)	N
1200	chr15	80676924	80676925	rs12908004	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q25.1	LINC00927, ARNT2	rs12908004-G	0.16	2E-14		1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1200	chr15	80676924	80676925	rs12908004	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q25.1	LINC00927, ARNT2	rs12908004-G	0.16	2E-13	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1200	chr15	80686992	80686993	rs7181782	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	15q25.1	ARNT2	rs7181782-C	NR	9E-8	(females)	0.17	[0.11-0.23] unit decrease	Illumina [7531543] (imputed)	N
1200	chr15	80694921	80694922	rs2278702	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	15q25.1	ARNT2	rs2278702-?	NR	6E-6				Affymetrix [1769948] (imputed)	N
1200	chr15	80694921	80694922	rs2278702	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	15q25.1	NR	rs2278702-?	0.83	6E-6		1.21	[NR]	Affymetrix [1769948] (imputed)	N
1200	chr15	80705826	80705827	rs12593988	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q25.1	ARNT2	rs12593988-?	NR	4E-10	(EA)	0.005173	[0.0026-0.0077] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1200	chr15	80705826	80705827	rs12593988	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	15q25.1	ARNT2	rs12593988-?	NR	2E-9		0.005111	[0.0028-0.0075] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1201	chr15	80818278	80818279	rs56181223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB27A	5,360 Icelandic ancestry individuals	NA	15q25.1		rs56181223-A	0.3211	1E-22		0.196597	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1201	chr15	80834142	80834143	rs11856273	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	15q25.1	ARNT2	rs11856273-A	0.16	3E-6		0.193	[0.11-0.27] unit decrease	Illumina [6380737] (imputed)	N
1201	chr15	80834519	80834520	rs7169055	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q25.1	NR	rs7169055-?	NR	1E-6				Affymetrix [NR]	N
1201	chr15	80844857	80844858	rs73494721	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		15q25.1	RP11-379K22.2	rs73494721-A	0.128686	8E-6		0.544142	[0.31-0.78] unit decrease	Illumina [640625] (imputed)	N
1201	chr15	80852327	80852328	rs77298235	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	15q25.1		rs77298235-G	0.972546	6E-8		0.0436932	[0.028-0.059] unit decrease	Illumina [13900000] (imputed)	N
1202	chr15	80877556	80877557	rs191299947	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ARNT2	rs191299947-A	0.994	2E-6	(AA)	0.107	unit increase	Illumina [NR] (imputed)	N
1202	chr15	80877556	80877557	rs191299947	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	ARNT2	rs191299947-A	0.994	1E-6	(AA)	0.556	NR unit increase	Illumina [NR] (imputed)	N
1202	chr15	80895340	80895341	rs78330668	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	15q25.1		rs78330668-A	0.1661	6E-6		1.823	[1.406-2.364]	Affymetrix [7975321] (imputed)	N
1202	chr15	80913583	80913584	rs78142448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	15q25.1		rs78142448-A	0.01853828	4E-8		0.15854847	[0.1-0.21] unit increase	Illumina [13429980] (imputed)	N
1202	chr15	80913583	80913584	rs78142448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls, 53,363 East Asian ancestry cases, 125,363 East Asian ancestry controls	NA	15q25.1		rs78142448-A	NR	4E-8		0.1585	[0.1-0.21] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1202	chr15	80919707	80919708	rs144587541	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q25.1	Intergenic	rs144587541-A	0.004	4E-6		0.1	unit decrease	Illumina [NR] (imputed)	N
1202	chr15	80972153	80972154	rs75023075	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	15q25.1		rs75023075-C	0.977492	8E-6		0.0390433	[0.022-0.056] unit decrease	Illumina [13900000] (imputed)	N
1202	chr15	80988599	80988600	rs7165759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q25.1		rs7165759-A	NR	6E-12		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1202	chr15	80988599	80988600	rs7165759	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	15q25.1	NR	rs7165759-A	0.2981	1E-10		0.017496347	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1202	chr15	80988599	80988600	rs7165759	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	15q25.1	ABHD17C	rs7165759-A	0.2981	1E-13		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1202	chr15	80988599	80988600	rs7165759	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	15q25.1	ABHD17C	rs7165759-A	0.3	1E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1202	chr15	80989171	80989172	rs34769775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q25.1	NR	rs34769775-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
1202	chr15	80989171	80989172	rs34769775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q25.1		rs34769775-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1202	chr15	80991446	80991447	rs34994596	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q25.1	ABHD17C	rs34994596-T	0.702696	1E-13		0.0111514	[0.0082-0.0141] unit increase	Affymetrix [12370749]	N
1202	chr15	80993569	80993570	rs12914623	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q25.1	NA	rs12914623-C	0.2722	2E-16		0.0159	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1202	chr15	80994019	80994020	rs35847895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q25.1		rs35847895-C	NR	2E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1202	chr15	80994019	80994020	rs35847895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q25.1	ABHD17C	rs35847895-C	0.452368	1E-10		0.014481284	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr15	80994287	80994288	rs2759301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q25.1		rs2759301-A	NR	8E-13		0.0139	[0.01-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1202	chr15	80994287	80994288	rs2759301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q25.1		rs2759301-A	NR	2E-14		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1202	chr15	80994287	80994288	rs2759301	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q25.1	ARNT2	rs2759301-A	0.454	9E-9		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1202	chr15	81001277	81001278	rs12148329	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	15q25.1	FAM108C1	rs12148329-?		9E-7	(Hispanic)			Illumina [NR]	N
1203	chr15	81002855	81002856	rs57783949	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q25.1	NR	rs57783949-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1203	chr15	81004676	81004677	rs7177344	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q25.1	ABHD17C	rs7177344-T	0.2607	3E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1203	chr15	81009645	81009646	rs2759315	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q25.1	NR	rs2759315-C	NR	5E-11		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1203	chr15	81010248	81010249	rs2062316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q25.1		rs2062316-G	NR	8E-16		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1203	chr15	81010248	81010249	rs2062316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q25.1		rs2062316-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1203	chr15	81013036	81013037	rs35199222	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	15q25.1	ABHD17C	rs35199222-A	0.45	5E-12		0.322	[0.22-0.42] unit increase	Affymetrix [~ 9800000] (imputed)	N
1203	chr15	81015426	81015427	rs2627308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	15q25.1		rs2627308-A	NR	6E-13		0.0533	[0.039-0.068] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1203	chr15	81015426	81015427	rs2627308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q25.1		rs2627308-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		3E-7	(EA)	0.31	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		2E-7		0.291	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		1E-12		0.276	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		3E-8		0.145	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		5E-6	(EA)	0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81016226	81016227	rs2759308	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q25.1	FAM108C1	rs2759308-G		9E-9		0.136	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1203	chr15	81018542	81018543	rs7174222	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	15q25.1	FAM108C1	rs7174222-T	0.467487	4E-12		0.054932512	[0.039-0.07] unit increase	Affymetrix [7288503] (imputed)	N
1203	chr15	81018542	81018543	rs7174222	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	15q25.1	FAM108C1	rs7174222-T	0.468408	6E-16		0.06535783	[0.05-0.081] unit increase	Affymetrix [7288503] (imputed)	N
1203	chr15	81018542	81018543	rs7174222	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	15q25.1	FAM108C1	rs7174222-T	0.468424	1E-9		0.037073057	[0.025-0.049] unit increase	Affymetrix [7288503] (imputed)	N
1203	chr15	81018586	81018587	rs7174250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q25.1		rs7174250-T	NR	9E-11		0.037	[0.026-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1203	chr15	81018586	81018587	rs7174250	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	15q25.1		rs7174250-T	0.4629315	4E-8		1.08		Affymetrix [15650645] (imputed)	N
1203	chr15	81019571	81019572	rs4778848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	15q25.1		rs4778848-A	NR	5E-19		0.0645	[0.05-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1203	chr15	81025754	81025755	rs7167767	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q25.1		rs7167767-G	0.347	3E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1203	chr15	81028964	81028965	rs11634851	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q25.1	FAM108C1	rs11634851-G	0.461	5E-7	(EA, initial)	0.36	[0.22-0.5] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1203	chr15	81028964	81028965	rs11634851	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q25.1	FAM108C1	rs11634851-G	0.461	5E-14		0.316	[0.23-0.4] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1203	chr15	81037732	81037733	rs35175632	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.1	FAM108C1	rs35175632-A	0.4496	3E-18		0.3039	[0.24-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
1203	chr15	81037732	81037733	rs35175632	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.1	FAM108C1	rs35175632-A	0.4503	2E-10		0.1649	[0.11-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
1203	chr15	81042815	81042816	rs2627316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q25.1		rs2627316-G	NR	1E-8		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1203	chr15	81055864	81055865	rs149479659	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	15q25.1	NR	rs149479659-?	NR	2E-6		1.1531807	[1.09-1.22]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1203	chr15	81058639	81058640	rs12593088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q25.1	NA	rs12593088-A	0.3106	5E-12		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1203	chr15	81058651	81058652	rs12593036	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q25.1	NA	rs12593036-A	0.6914	2E-15		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1203	chr15	81058651	81058652	rs12593036	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	15q25.1	LOC283688, ARNT2, MIR549, KIAA1199, MESDC2, MIR4514, MESDC1, C15orf26, IL16	rs12593036-A	0.687491748288475	2E-8		0.018267695	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1203	chr15	81098972	81098973	rs1484224	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	15q25.1	NR	rs1484224-T	0.01	5E-6	(Asian)	0.66	[0.38-0.94] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1204	chr15	81136717	81136718	rs79170539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	15q25.1	CEMIP	rs79170539-?	NR	1E-8		0.02707	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1204	chr15	81137075	81137076	rs55966621	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	15q25.1	NR	rs55966621-?	NR	7E-6		0.066907	[0.038-0.096] unit increase	Affymetrix [9658292] (imputed)	N
1204	chr15	81148738	81148739	rs16972495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q25.1	NR	rs16972495-C	NR	8E-10		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1204	chr15	81148738	81148739	rs16972495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q25.1	NR	rs16972495-C	NR	2E-10		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1204	chr15	81148738	81148739	rs16972495	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q25.1	NR	rs16972495-C	NR	5E-10		0.0192	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1204	chr15	81148738	81148739	rs16972495	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	15q25.1	CEMIP	rs16972495-?	NR	2E-8		0.02353	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1204	chr15	81165841	81165842	rs62035088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q25.1		rs62035088-A	NR	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1204	chr15	81165841	81165842	rs62035088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q25.1		rs62035088-A	NR	1E-17		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1204	chr15	81165841	81165842	rs62035088	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q25.1	CEMIP	rs62035088-G	0.851	8E-9		0.272	[0.033-0.511] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1204	chr15	81167778	81167779	rs8025378	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q25.1	NR	rs8025378-T	0.74	3E-8		0.0116	[0.0074-0.0158] unit decrease	NR [NR]	N
1204	chr15	81177736	81177737	rs4778864	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	15q25.1	CEMIP	rs4778864-?		8E-6	(EA)	0.15895666	[0.089-0.229] unit decrease	Illumina [13620258] (imputed)	N
1204	chr15	81190531	81190532	rs11638450	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	15q25.1	KIAA1199	rs11638450-T	0.376	3E-7		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
1204	chr15	81214610	81214611	rs2271162	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	15q25.1	NR	rs2271162-A	0.78	3E-6		0.279	[0.16-0.39] unit increase	Illumina [5418572] (imputed)	N
1204	chr15	81228024	81228025	rs10220834	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	15q25.1	NR	rs10220834-?		4E-6		0.5	[0.37-0.67]	Illumina [539473] (imputed)	N
1204	chr15	81238044	81238045	rs12916361	27587472	Postmus I	2016-09-01	J Med Genet	Meta-analysis of genome-wide association studies of HDL cholesterol response to statins.	Response to statins (HDL cholesterol change)	16,769 European ancestry individuals	10,951 European ancestry individuals	15q25.1	NR	rs12916361-?	NR	5E-6		0.0139	[0.13-0.15] unit increase	Affymetrix, Illumina, Perlegen [up to 2500000] (imputed)	N
1204	chr15	81241246	81241249	rs200201338	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q25.1	KIAA1199, MESDC2	rs200201338-TGAA	0.979594	4E-8	(-168 ms)	0.109886	[0.071-0.149] unit decrease	Affymetrix [10000000] (imputed)	N
1204	chr15	81246027	81246028	rs1012541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	MESDC2	rs1012541-G	0.96578125	2E-6	(MESDC2, 5594_87_3)	0.3130878	[0.18-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1205	chr15	81311137	81311138	rs73489795	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Geobacter C abundance in stool	5,959 Finnish ancestry individuals	NA	15q25.1		rs73489795-T	0.0441622	3E-8		0.0646329	[0.042-0.087] unit decrease	Illumina [7980478] (imputed)	N
1205	chr15	81359136	81359137	rs2663905	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	15q25.1	LOC647020	rs2663905-A	0.75	5E-6	(UAZ Cert)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1205	chr15	81377716	81377717	rs1879454	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q25.1	TLNRD1, CFAP161	rs1879454-A	0.214405	7E-7		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1205	chr15	81377716	81377717	rs1879454	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q25.1	TLNRD1, CFAP161	rs1879454-?	NR	4E-10		0.0362355	[0.025-0.048] unit decrease	Illumina [4804024] (imputed)	N
1205	chr15	81392902	81392903	rs2663924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q25.1	C15orf26	rs2663924-T	0.245477	3E-8		0.0123517	[0.008-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
1205	chr15	81393158	81393159	rs187208403	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q25.1	C15orf26	rs187208403-A	0.0176684176452006	6E-6	(G_Ruminococcus_HB)	1.36754	[0.78-1.96] unit decrease	Illumina [7711310] (imputed)	N
1206	chr15	81400681	81400682	rs34438904	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	15q25.1		rs34438904-?	NR	1E-5				Illumina [7401356] (imputed)	N
1206	chr15	81407903	81407904	rs113246996	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q25.1	NR	rs113246996-T	NR	1E-6		1.963	[1.50-2.58]	Illumina [13976150] (imputed)	N
1206	chr15	81489062	81489063	rs4448892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.1		rs4448892-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1206	chr15	81498970	81498971	rs1912124	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	15q25.1	NR	rs1912124-?	NR	2E-6	(AA)	118.9	[115.08-122.72]	Illumina [905956]	N
1206	chr15	81520887	81520888	rs2202885	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q25.1	IL16	rs2202885-T	0.7057	9E-10		0.0128	[0.0087-0.0169] unit increase	Affymetrix [18391927] (imputed)	N
1207	chr15	81529409	81529410	rs11072996	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q25.1	IL16	rs11072996-C	0.07171515	2E-11	(EA, Interleukin-16)	0.5373	[0.38-0.69] unit decrease	Affymetrix [509946]	N
1207	chr15	81530847	81530848	rs67093094	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q25.1	IL6	rs67093094-T	0.2049	7E-50		1.151	NR	Affymetrix [9154080] (imputed)	N
1207	chr15	81533377	81533378	rs7179134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q25.1		rs7179134-?	NR	3E-73				NR [~ 8900000] (imputed)	N
1207	chr15	81533694	81533695	rs7172689	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q25.1	IL16	rs7172689-?	NR	4E-6	(count)			Perlegen [429981]	N
1207	chr15	81534033	81534034	rs28648707	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	15q25.1	IL16	rs28648707-A	0.2068	3E-11		1.109	NR	Affymetrix [9154080] (imputed)	N
1207	chr15	81587756	81587757	rs17875496	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	15q25.1	NR	rs17875496-?	NR	9E-6		0.0216	[0.012-0.031] unit decrease	Illumina [at least 560000] (imputed)	N
1207	chr15	81591638	81591639	rs4778636	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	15q25.1	NR	rs4778636-?	NR	1E-35	(IL-16)	0.48	[0.4-0.56] unit decrease	Illumina [4020654] (imputed)	N
1207	chr15	81591638	81591639	rs4778636	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q25.1	NR	rs4778636-?	NR	4E-27	(EA, Interleukin-16)			Affymetrix [509946]	N
1207	chr15	81591638	81591639	rs4778636	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	15q25.1	IL16	rs4778636-G		1E-30		0.7272	[0.6-0.85] SD units increase	NR [10700000] (imputed)	N
1207	chr15	81596606	81596610	rs139879640	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	15q25.1	IL16	rs139879640-TCTCA	0.94	3E-62		0.86	unit increase	Illumina [5270624] (imputed)	N
1207	chr15	81598224	81598225	rs17875533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.1		rs17875533-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1207	chr15	81598268	81598269	rs11556218	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	15q25.1	IL16	rs11556218-C	0.189	9E-9		1.29	[1.18-1.41]	Illumina [776516]	N
1207	chr15	81598415	81598416	rs1803275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.1	NR	rs1803275-A	0.105003	2E-21				Affymetrix, Illumina [23472807] (imputed)	N
1207	chr15	81598415	81598416	rs1803275	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	15q25.1	NR	rs1803275-?		1E-72	(IL16)	1.085	[NR] unit decrease	Illumina [NR]	N
1207	chr15	81599442	81599443	rs3926279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q25.1		rs3926279-G	NR	2E-11		0.0221	[0.016-0.029] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1207	chr15	81599442	81599443	rs3926279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q25.1	RP11-761I4.4, IL16	rs3926279-G	0.093441	4E-17		0.032032095	[0.025-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr15	81599442	81599443	rs3926279	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q25.1	NR	rs3926279-G	0.091022	4E-20		0.030499	[0.024-0.037] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1207	chr15	81600019	81600020	rs7166271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.1	IL16	rs7166271-C	0.90890625	7E-83	(IL16, 2774_10_3)	0.80036205	[0.72-0.88] unit increase	Illumina [> 1000000] (imputed)	N
1207	chr15	81600450	81600451	rs4778639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL16	5,355 Icelandic ancestry individuals	NA	15q25.1		rs4778639-G	0.09379	2E-147		0.750769	[0.69-0.81] unit decrease	Illumina [7506463] (imputed)	N
1207	chr15	81600450	81600451	rs4778639	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.1		rs4778639-T	0.92	4E-970		0.971	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1207	chr15	81600450	81600451	rs4778639	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	15q25.1	NR	rs4778639-?	NR	2E-38	(IL-16)			Illumina [~ 4000000] (imputed)	N
1207	chr15	81600450	81600451	rs4778639	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q25.1	IL16	rs4778639-G	0.091	5E-59	(Interleukin-16, IL16.2774.10.3)	0.68	[0.6-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
1207	chr15	81601321	81601322	rs859	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.1		rs859-A	0.73	8E-40		0.13	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1207	chr15	81601339	81601340	rs11325	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q25.1	IL16	rs11325-?	NR	5E-9		0.020263413	[0.013-0.027] unit increase	Illumina [27896057] (imputed)	N
1207	chr15	81624928	81624929	rs150843673	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q25.1		rs150843673-T	0.0213	1E-12		0.3501085	[0.25-0.45] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1207	chr15	81626724	81626725	rs3935740	23793441	Davis MF	2013-06-21	Hum Genet	Parkinson disease loci in the mid-western Amish.	Parkinson's disease	31 Amish cases, 767 Amish controls	NA	15q25.1	TMC3	rs3935740-T	0.08	2E-7				Affymetrix [622812]	N
1208	chr15	81690765	81690766	rs530826342	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q25.1	CTD-2240J17.3	rs530826342-A	0.9987	3E-6		1.2523	[0.73-1.78] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1208	chr15	81705749	81705750	rs74249803	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q25.2	NR	rs74249803-?	NR	4E-7	(AA)	1.8701	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1208	chr15	81778098	81778099	rs150925642	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q25.2	NR	rs150925642-G	0.01	2E-7		2.08	[1.81-2.35]	Illumina [8468885] (imputed)	N
1209	chr15	81790467	81790468	rs1564641	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.2		rs1564641-A	0.48	6E-16		0.0724	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1209	chr15	81817630	81817631	rs74030106	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	15q25.2	NR	rs74030106-?	0.05	2E-6		1.2820514	[1.16-1.43]	Illumina [~ 1113287] (imputed)	N
1209	chr15	81823537	81823538	rs11857976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q25.2		rs11857976-C	NR	4E-28		0.0165	[0.014-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1209	chr15	81823537	81823538	rs11857976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	CTD-2034I4.1	rs11857976-T	NR	3E-8		0.0175254	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1209	chr15	81823537	81823538	rs11857976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs11857976-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1209	chr15	81835460	81835461	rs35056343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q25.2		rs35056343-A	0.812416	2E-13		0.0189129	[0.014-0.024] unit increase	Illumina [13479295] (imputed)	N
1209	chr15	81835460	81835461	rs35056343	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q25.2	TMC3-AS1, MEX3B	rs35056343-?	NR	2E-13		0.026833147	[0.02-0.034] unit increase	Illumina [27896057] (imputed)	N
1209	chr15	81847278	81847279	rs969348	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	15q25.2	TMC3, MEX3B	rs969348-?	NR	6E-6		5.866	unit increase (EA, Australian cohort)	Illumina [610255]	N
1209	chr15	81870619	81870620	rs2672092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q25.2		rs2672092-C	NR	3E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q25.2		rs2672092-T	0.772	9E-9		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs2672092-C	0.228181	1E-11		0.017922558	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs2672092-C	0.228161	5E-11		0.017264158	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q25.2	NR	rs2672092-C	0.229374	4E-15		0.017288	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.2	NR	rs2672092-C	0.313568	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.2	NR	rs2672092-C	0.318093	3E-16				Affymetrix, Illumina [20825802] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q25.2	NR	rs2672092-C	0.228107	7E-17		0.019153	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.2		rs2672092-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1209	chr15	81870619	81870620	rs2672092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q25.2		rs2672092-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1209	chr15	81874035	81874036	rs2625004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q25.2		rs2625004-G	NR	1E-10		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1209	chr15	81874035	81874036	rs2625004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs2625004-G	0.225517	1E-11		0.018142102	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr15	81874035	81874036	rs2625004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs2625004-G	0.225503	9E-12		0.0179987	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr15	81874035	81874036	rs2625004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q25.2	NR	rs2625004-G	0.226746	9E-16		0.017525	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1209	chr15	81878850	81878851	rs2672083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs2672083-C	0.225847	5E-9		0.015563644	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr15	81879173	81879174	rs4402521	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q25.2	TMC3-AS1, MEX3B	rs4402521-?	NR	4E-10		0.4954	[0.33-0.66] unit increase	Affymetrix [11100000] (imputed)	N
1209	chr15	81888087	81888088	rs12443468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.2	NR	rs12443468-G	0.324361	1E-14				Affymetrix, Illumina [24332387] (imputed)	N
1209	chr15	81888087	81888088	rs12443468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.2	NR	rs12443468-G	0.295003	3E-14				Affymetrix, Illumina [19905671] (imputed)	N
1209	chr15	81895511	81895517	rs138723875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q25.2	CTD-2034I4.2, CTD-2034I4.1	rs138723875-G	0.773889	2E-11		0.018185949	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr15	81895515	81895521	rs10540764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	15q25.2		rs10540764-G	0.351585	1E-8		0.0267673	[0.018-0.036] unit decrease	Illumina [13469940] (imputed)	N
1209	chr15	81911144	81911145	rs187701342	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	15q25.2	LOC101929655	rs187701342-?	NR	1E-6		0.229	[0.13-0.33] unit decrease	Illumina [6319684] (imputed)	N
1209	chr15	81917984	81917985	rs8035809	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	15q25.2	NR	rs8035809-C	NR	9E-6		0.0446	[0.025-0.064] unit decrease	Illumina [~ 540852]	N
1210	chr15	82008312	82008313	rs3934047	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	15q25.2		rs3934047-T	NR	3E-6	(GLM)	0.9856	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1210	chr15	82009110	82009111	rs12915820	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	15q25.2		rs12915820-T	NR	1E-7	(GLM)	3.4619	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1210	chr15	82009110	82009111	rs12915820	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	15q25.2		rs12915820-?	NR	2E-6	(MLM)	0.1859238	[0.11-0.26] unit increase	Illumina [~ 9000000] (imputed)	N
1210	chr15	82010501	82010502	rs28403489	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	15q25.2		rs28403489-?	NR	8E-6	(MLM)	0.1723415	[0.097-0.248] unit increase	Illumina [~ 9000000] (imputed)	N
1210	chr15	82016617	82016618	rs16973084	27529621	Otowa T	2016-08-16	PLoS One	The First Pilot Genome-Wide Gene-Environment Study of Depression in the Japanese Population.	Depressive symptoms	320 Japanese ancestry individuals	439 Japanese ancestry individuals	15q25.2	NR	rs16973084-G	0.053	8E-6		6.167	unit increase	Affymetrix [534848]	N
1211	chr15	82130277	82130278	rs79951027	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q25.2	Intergenic	rs79951027-?		7E-6		1.19	[1.11-1.29]	Illumina [7645193] (imputed)	N
1211	chr15	82170050	82170051	rs10162699	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.2	EFTUD1	rs10162699-?	NR	5E-6	(LPC 16:1)	0.3327419	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1212	chr15	82193845	82193846	rs77963519	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	15q25.2	MEX3B	rs77963519-?		4E-6		1.56	[0.91-2.21] unit increase	Illumina [1197702]	N
1212	chr15	82215869	82215870	rs796142834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-276M12.1	rs796142834-AC	NR	5E-8		0.0271412	[0.017-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1212	chr15	82229998	82229999	rs16973225	25781442	Nan H	2015-03-17	JAMA	Association of aspirin and NSAID use with risk of colorectal cancer according to genetic variants.	Colorectal cancer (aspirin and/or NSAID use interaction)	8,634 European ancestry cases, 8,553 European ancestry controls	NA	15q25.2	IL16	rs16973225-?	NR	8E-9	(Case only)			Affymetrix, Illumina [2700000] (imputed)	N
1212	chr15	82235113	82235114	rs16973236	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Systolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	15q25.2	LOC102724001	rs16973236-G	0.16625	7E-6		1.6928	[0.95-2.43] unit increase	Affymetrix [NR] (imputed)	N
1212	chr15	82246577	82246578	rs28463783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs28463783-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1212	chr15	82304401	82304402	rs113094629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q25.2		rs113094629-A	NR	1E-10		0.0277	[0.019-0.036] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1212	chr15	82306330	82306331	rs12324750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q25.2	RP11-597K23.1	rs12324750-C	0.117727	6E-12		0.0197846	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1212	chr15	82306330	82306331	rs12324750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q25.2		rs12324750-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1213	chr15	82315184	82315185	rs34082296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	RP11-597K23.1	rs34082296-G	NR	5E-10		0.0254704	[0.017-0.033] unit increase	Affymetrix [321788] (imputed)	N
1213	chr15	82315184	82315185	rs34082296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-597K23.1	rs34082296-G	NR	6E-12		0.0270617	[0.019-0.035] unit increase	Affymetrix [321016] (imputed)	N
1213	chr15	82320425	82320426	rs8039459	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q25.2	MEX3B, EFTUD1	rs8039459-?		3E-27				Affymetrix, Illumina [NR] (imputed)	N
1213	chr15	82326774	82326775	rs1969091	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	15q25.2	TMC3, MEX3B	rs1969091-A	0.2921	2E-10		6.365	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1213	chr15	82352199	82352200	rs12324805	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	15q25.2	RKHD3	rs12324805-C	0.31	7E-6				Affymetrix, Illumina [2399588] (imputed)	N
1213	chr15	82355224	82355225	rs12592578	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	15q25.2	NR	rs12592578-?	NR	1E-7		0.193954	[0.12-0.27] unit increase	NR [13958389] (imputed)	N
1213	chr15	82384656	82384657	rs1466921	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	15q25.2	EFTUD1	rs1466921-T		9E-7		0.353	[NR] unit decrease	Illumina [1067955] (imputed)	N
1213	chr15	82387861	82387862	rs3087595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q25.2	RP11-597K23.2	rs3087595-C	0.26684	3E-11		0.016693238	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1213	chr15	82387861	82387862	rs3087595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.2		rs3087595-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1213	chr15	82394640	82394641	rs2654213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-597K23.2	rs2654213-T	NR	1E-8		0.0167405	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1213	chr15	82396346	82396347	rs2665118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-597K23.2	rs2665118-G	NR	5E-11		0.0214918	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1213	chr15	82405640	82405641	rs2654210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q25.2		rs2654210-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1213	chr15	82412408	82412409	rs2665113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	EFTUD1	rs2665113-T	NR	4E-8		0.0164199	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1213	chr15	82420742	82420743	rs2174110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	EFTUD1	rs2174110-A	NR	7E-11		0.0227074	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1213	chr15	82425864	82425865	rs66904072	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	15q25.2	ADAMTS7P1, AP3B2, CPEB1, EFTUD1, FAM154B, FSD2, GOLGA6L9, GOLGA6L10, GOLGA6L17P, HOMER2, LOC80154, LOC283692, LOC283693, LOC338963, LOC727751, LOC101929690, LOC102724034, MEX3B, RPS17, SCARNA15, SNHG21, UBE2Q2P2, WHAMM	rs66904072-G	0.0363	7E-6		1.3617901		Illumina [8265319] (imputed)	N
1213	chr15	82426712	82426712	rs376117198	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q25.2	NR	rs376117198-CT	0.22440099999999996	1E-10		0.0160784	[0.011-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1213	chr15	82432714	82432715	rs2665103	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.2	NR	rs2665103-T	NR	4E-9		5.904	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1213	chr15	82432714	82432715	rs2665103	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q25.2	EFTUD1	rs2665103-T	NR	4E-10		0.018218447	[0.013-0.024] unit increase	Affymetrix [NR]	N
1213	chr15	82436503	82436504	rs4778665	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.2	NR	rs4778665-A	NR	4E-9		5.889	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1213	chr15	82438345	82438346	rs867371	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	15q25.2	EFTUD1	rs867371-?	NR	1E-10		6.43	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1213	chr15	82438345	82438346	rs867371	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	15q25.2	EFTUD1	rs867371-?	NR	3E-6		4.705	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1214	chr15	82444436	82444437	rs905450	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	15q25.2	EFL1	rs905450-?	NR	6E-6			NR	Affymetrix [2067592] (imputed)	N
1214	chr15	82488238	82488239	rs111491984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q25.2		rs111491984-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1214	chr15	82507604	82507605	rs112500920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q25.2	NR	rs112500920-T	0.930063	4E-11		0.0116177	[0.0084-0.0148] unit increase	Affymetrix [16582909] (imputed)	N
1214	chr15	82507604	82507605	rs112500920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q25.2	NR	rs112500920-T	0.930063	3E-8		0.0113549	[0.0078-0.0149] unit increase	Affymetrix [16582965] (imputed)	N
1214	chr15	82513120	82513121	rs28420834	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	15q25.2		rs28420834-A	0.4291	3E-9		45.66343	z score increase	NR [6814003]	N
1214	chr15	82513120	82513121	rs28420834	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q25.2	EFTUD1	rs28420834-A	NR	1E-10		0.028913617	[0.02-0.038] unit decrease	Affymetrix [NR]	N
1214	chr15	82513120	82513121	rs28420834	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	15q25.2	NR	rs28420834-A	0.4536	3E-10		0.014275947	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1214	chr15	82521706	82521707	rs62012045	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	15q25.2		rs62012045-A	NR	1E-8		0.0315	[0.021-0.042] unit increase	Affymetrix [6193476] (imputed)	N
1214	chr15	82521769	82521770	rs8025964	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.2	NR	rs8025964-A	NR	6E-10		6.196	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1214	chr15	82524543	82524544	rs2134046	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	15q25.2	EFTUD1	rs2134046-?	NR	2E-8		5.579	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1214	chr15	82530629	82530630	rs1972460	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q25.2	EFTUD1	rs1972460-A	NR	2E-10		0.018744726	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1214	chr15	82540336	82540337	rs4778988	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	EFTUD1	rs4778988-T	NR	2E-8		5.629	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1214	chr15	82546945	82546946	rs12439619	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q25.2	NR	rs12439619-T	0.307157	1E-10		0.043976955	[0.031-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1214	chr15	82546945	82546946	rs12439619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q25.2	Intergenic	rs12439619-T	0.6854	8E-11		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1214	chr15	82546945	82546946	rs12439619	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q25.2	EFTUD1	rs12439619-T	NR	1E-8		0.018942412	[0.012-0.025] unit decrease	Affymetrix [NR]	N
1214	chr15	82558033	82558034	rs3858954	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	FAM154B	rs3858954-C	NR	3E-8		5.557	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1214	chr15	82558801	82558802	rs11854289	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.2	NR	rs11854289-T	NR	4E-8		5.475	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1214	chr15	82564554	82564555	rs4238534	30693016	Lin WY	2019-01-14	Front Genet	Genome-Wide Gene-Environment Interaction Analysis Using Set-Based Association Tests.	Diastolic blood pressure x alcohol consumption interaction (1df test)	1,764 Han Chinese and unknown ancestry alcohol drinkers, 14,779 Han Chinese and unknown ancestry non-drinkers	NA	15q25.2	ADAMTS7P1	rs4238534-T	0.1627	6E-6		2.1048	[1.19-3.01] unit decrease	NR [603741]	N
1217	chr15	82881754	82881755	rs34845432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTS7P1	rs34845432-A	NR	6E-9		0.0245726	[0.016-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1219	chr15	83214764	83214764	rs35385880	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	15q25.2	NR	rs35385880-C	0.352266	3E-8		1.005	[1.003, 1.007]	Affymetrix [39302896] (imputed)	N
1219	chr15	83221391	83221392	rs3850610	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	CPEB1, ENSG00000260836, ENSG00000261086	rs3850610-A	NR	3E-9		5.931	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1219	chr15	83226924	83226925	rs17507216	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q25.2	ENSG00000261086, CPEB1	rs17507216-?	NR	4E-10		0.01446739	[0.0099-0.019] unit increase	NR [7306098]	N
1219	chr15	83226924	83226925	rs17507216	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	15q25.2	CPEB1	rs17507216-A	0.232	2E-7		0.026	[0.016-0.036] unit increase	Affymetrix [up to 73355677] (imputed)	N
1220	chr15	83235407	83235408	rs17158413	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	15q25.2	CPEB1	rs17158413-A		2E-13		0.0074	[0.0054-0.0094] unit increase	Affymetrix [13304133] (imputed)	N
1220	chr15	83235407	83235408	rs17158413	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	15q25.2	NR	rs17158413-G	0.229622	1E-10		0.048090108	[0.033-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1220	chr15	83240292	83240293	rs783544	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	15q25.2	CPEB1	rs783544-A	0.250522	4E-10		0.014819	[0.01-0.019] unit decrease	NR [16516521] (imputed)	N
1220	chr15	83252806	83252807	rs783537	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	15q25.2	SAXO2	rs783537-A	0.351356	4E-9		5.9	z score increase	NR [10847151] (imputed)	N
1220	chr15	83254707	83254708	rs783540	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs783540-?	NR	3E-8				NR [2625067]	N
1220	chr15	83254707	83254708	rs783540	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs783540-?	NR	2E-8		1.049274	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1220	chr15	83254707	83254708	rs783540	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CPEB1	rs783540-G	NR	9E-9		1.0548522	[1.04-1.07]	Illumina [6627481] (imputed)	N
1220	chr15	83254707	83254708	rs783540	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CPEB1	rs783540-G	NR	5E-8	(EA)	1.0616838	[1.04-1.08]	Illumina [6627481] (imputed)	N
1220	chr15	83254707	83254708	rs783540	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		AP3B2, CPEB1	rs783540-G	NR	3E-8		1.0526316	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1220	chr15	83254707	83254708	rs783540	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs783540-G	NR	7E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1220	chr15	83263743	83263744	rs150684763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs150684763-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1220	chr15	83334855	83334856	rs72753908	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q25.2	NR	rs72753908-C	0.925278	2E-9		0.0125302	[0.0082-0.0169] unit increase	Affymetrix [16582621] (imputed)	N
1220	chr15	83334855	83334856	rs72753908	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q25.2	NR	rs72753908-C	0.925278	2E-6		0.0108527	[0.0062-0.0155] unit increase	Affymetrix [16582614] (imputed)	N
1220	chr15	83352281	83352282	rs11638815	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	15q25.2	AP3B2	rs11638815-C	0.25	1E-6	(Change)	4.1	[2.14-6.06] nmol/min/ml increase	Illumina [796174]	N
1220	chr15	83360588	83360589	rs113970449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	RP11-752G15.3, AP3B2, RP11-752G15.4	rs113970449-C	NR	3E-8		0.0626451	[0.04-0.085] unit increase	Affymetrix [321114] (imputed)	N
1221	chr15	83368604	83368605	rs186017271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q25.2		rs186017271-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1221	chr15	83370069	83370070	rs28737193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q25.2	Intergenic	rs28737193-T	0.2131	2E-9	(MTAG)	0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr15	83370069	83370070	rs28737193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q25.2	Intergenic	rs28737193-T	0.2084	4E-11	(MTAG)	0.0106	[0.0075-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr15	83370069	83370070	rs28737193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q25.2	Intergenic	rs28737193-T	0.207	4E-11	(MTAG)	0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr15	83384068	83384069	rs28607761	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q25.2	NR	rs28607761-G	NR	2E-14		0.0229	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1221	chr15	83384068	83384069	rs28607761	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q25.2	NR	rs28607761-G	NR	3E-14		0.0227	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1221	chr15	83398314	83398315	rs7163848	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	NR	rs7163848-?	NR	5E-8		5.451	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1221	chr15	83403725	83403726	rs8028130	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.2	NR	rs8028130-T	NR	3E-9		5.948	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1221	chr15	83416178	83416179	rs4779059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	RP11-752G15.8	rs4779059-G	NR	9E-10		0.0192225	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1221	chr15	83416178	83416179	rs4779059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-752G15.8	rs4779059-G	NR	4E-13		0.0219125	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
1221	chr15	83427393	83427394	rs3743102	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	15q25.2	Intergenic	rs3743102-?		5E-6		1.452	[NR]	Affymetrix [492217] (imputed)	N
1221	chr15	83432160	83432161	rs117008454	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.2		rs117008454-A	0.01	8E-10		0.3401	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1221	chr15	83459296	83459296	rs112603453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	FSD2	rs112603453-TTG	NR	2E-9		0.0224746	[0.015-0.03] unit increase	Affymetrix [321016] (imputed)	N
1221	chr15	83459369	83459370	rs66500181	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q25.2	NR	rs66500181-?	NR	5E-6		0.95	[0.89-1.03]	Illumina [539000] (imputed)	N
1221	chr15	83461872	83461873	rs36111056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q25.2		rs36111056-A	NR	3E-17		0.0201	[0.015-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1221	chr15	83461872	83461873	rs36111056	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q25.2	NR	rs36111056-G	0.7802	2E-9		0.0341	[0.023-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1221	chr15	83461872	83461873	rs36111056	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q25.2	NR	rs36111056-G	0.7922	1E-8		0.0303	[0.02-0.041] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1221	chr15	83465788	83465789	rs200540247	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	15q25.2	FSD2	rs200540247-A	0.288922	3E-10		0.0133506	[0.0092-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
1222	chr15	83508930	83508931	rs11635618	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	NR	rs11635618-?	NR	4E-6		4.617	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1222	chr15	83514598	83514599	rs7182990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q25.2		rs7182990-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1222	chr15	83516854	83516855	rs955620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	HOMER2	rs955620-C	NR	2E-11		0.0197117	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1222	chr15	83516854	83516855	rs955620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	HOMER2	rs955620-C	NR	2E-15		0.0225754	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1222	chr15	83528842	83528843	rs2667376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.2		rs2667376-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1222	chr15	83531773	83531774	rs62011709	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	15q25.2	HOMER2	rs62011709-T	0.747	1E-8		1.06418	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1222	chr15	83542045	83542046	rs3784374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	HOMER2	rs3784374-G	NR	5E-12		0.0321243	[0.023-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1222	chr15	83617849	83617849	rs745889367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	HOMER2, RP11-382A20.5	rs745889367-A	NR	5E-9		0.0223368	[0.015-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1222	chr15	83617849	83617849	rs745889367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	HOMER2, RP11-382A20.5	rs745889367-A	NR	2E-11		0.0245978	[0.017-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1223	chr15	83634765	83634766	rs76097616	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	15q25.2		rs76097616-T	0.01064	2E-6		2.371	[1.664-3.37899999999999]	Affymetrix [7975321] (imputed)	N
1223	chr15	83680286	83680287	rs4842860	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	15q25.2	C15orf40	rs4842860-A	0.38	4E-7		1.05	[1.03 -1.07]	Illumina [at least 109036]	N
1223	chr15	83680328	83680329	rs17361375	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	15q25.2	C15orf40	rs17361375-G	0.79	4E-7		1.06	[1.04 -1.09]	Illumina [at least 109036]	N
1223	chr15	83693512	83693513	rs7181169	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q25.2	BTBD1	rs7181169-T	0.56	8E-9	(conditional on rs10152300)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1223	chr15	83722058	83722059	rs17507300	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q25.2	BTBD1	rs17507300-A	0.8319	1E-11		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1223	chr15	83726178	83726179	rs1568657	21326860	Tsai FJ	2011-02-04	PLoS One	Identification of novel susceptibility Loci for kawasaki disease in a Han chinese population by a genome-wide association study.	Kawasaki disease	250 Han Chinese ancestry cases, 446 Han Chinese ancestry controls	208 Han Chinese ancestry cases, 366 Han Chinese ancestry controls	15q25.2	BTBD1	rs1568657-G	0.52	7E-6		1.409	[1.191-1.667]	Affymetrix [723638]	N
1223	chr15	83732904	83732905	rs7177462	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	NR	rs7177462-?	NR	2E-6		4.742	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1223	chr15	83740276	83740277	rs7166645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q25.2	RP11-382A20.6, RP11-382A20.5	rs7166645-A	0.386983	3E-9		0.013592885	[0.0091-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1223	chr15	83740276	83740277	rs7166645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q25.2	RP11-382A20.6, RP11-382A20.5	rs7166645-A	0.386985	3E-10		0.014323715	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1224	chr15	83781473	83781474	rs1075619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q25.2	TM6SF1	rs1075619-C	0.220768	1E-13		0.019880364	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1224	chr15	83799631	83799632	rs2034618	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q25.2	TM6SF1	rs2034618-C		5E-6		0.192	unit increase	Affymetrix [at least 2696785] (imputed)	N
1224	chr15	83799631	83799632	rs2034618	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q25.2	TM6SF1	rs2034618-C		2E-11		0.188	unit increase	Affymetrix [at least 2696785] (imputed)	N
1224	chr15	83825116	83825117	rs17567999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	HDGFRP3	rs17567999-T	NR	3E-8		0.0291275	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
1224	chr15	83830970	83830971	rs185392832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs185392832-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1224	chr15	83879617	83879618	rs8027193	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	15q25.2		rs8027193-T	0.24	1E-8		0.08	unit increase	Illumina [2093892] (imputed)	N
1224	chr15	83879617	83879618	rs8027193	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	15q25.2		rs8027193-T	0.24	8E-8		0.08	unit increase	Illumina [2398641] (imputed)	N
1224	chr15	83883539	83883540	rs4402530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.2	NR	rs4402530-T	0.207335	2E-12				Affymetrix, Illumina [23472807] (imputed)	N
1224	chr15	83883539	83883540	rs4402530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q25.2	NR	rs4402530-T	0.224217	6E-14		0.017603	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1225	chr15	83893242	83893243	rs12442563	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q25.2	NR	rs12442563-T	0.223	4E-17		0.0108948	[0.0084-0.0134] unit decrease	NR [9732723] (imputed)	N
1225	chr15	83893242	83893243	rs12442563	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q25.2	NR	rs12442563-T	0.223	3E-14		0.023229608	[0.017-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1225	chr15	83917073	83917074	rs4386103	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.2	NR	rs4386103-?	NR	6E-7		4.984	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1225	chr15	83952137	83952138	rs113930428	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q25.2		rs113930428-A	0.88	9E-12		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
1225	chr15	83954583	83954584	rs8042597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q25.2		rs8042597-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1225	chr15	83955535	83955536	rs55893521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs55893521-G	NR	9E-9		0.0198581	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
1225	chr15	83957216	83957217	rs8033380	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	15q25.2	BNC1	rs8033380-C	0.2779	1E-14		1.07	NR	Affymetrix [9154080] (imputed)	N
1225	chr15	83977165	83977166	rs62025923	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	15q25.2	BNC1, SH3GL3	rs62025923-C		6E-11		0.972	[NR]	Affymetrix [up to 79000000] (imputed)	N
1225	chr15	84001388	84001389	rs12441893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs12441893-G	NR	4E-8		0.0178305	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
1226	chr15	84022414	84022415	rs150799695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs150799695-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1226	chr15	84044870	84044871	rs74848625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs74848625-T	NR	3E-9		0.0338473	[0.023-0.045] unit increase	Affymetrix [321016] (imputed)	N
1226	chr15	84052558	84052559	rs143296284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs143296284-C	NR	2E-8		0.0406557	[0.027-0.055] unit increase	Affymetrix [321016] (imputed)	N
1226	chr15	84071849	84071850	rs4843136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs4843136-T	NR	3E-8		0.0354943	[0.023-0.048] unit decrease	Affymetrix [321016] (imputed)	N
1226	chr15	84071849	84071850	rs4843136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs4843136-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1226	chr15	84077211	84077212	rs145152209	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q25.2	Intergenic	rs145152209-?		3E-6		1.05	[1.03-1.08]	Illumina [7645193] (imputed)	N
1226	chr15	84077211	84077212	rs145152209	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q25.2	Intergenic	rs145152209-?		6E-7		1.19	[1.11-1.28]	Illumina [7645193] (imputed)	N
1226	chr15	84077211	84077212	rs145152209	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q25.2	SH3GL3, BNC1	rs145152209-?		3E-8	(uterine fibroid)			Illumina [7645193] (imputed)	N
1226	chr15	84088974	84088975	rs75340848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs75340848-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1226	chr15	84095981	84095982	rs7359296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-382A20.4	rs7359296-G	NR	2E-8		0.0227883	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
1226	chr15	84103750	84103751	rs149980066	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	15q25.2	NR	rs149980066-C	0.011	1E-5		0.7329	[0.41-1.06] unit decrease	Illumina [NR] (imputed)	N
1226	chr15	84137308	84137309	rs145814941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs145814941-G	NR	5E-9		0.0679085	[0.045-0.091] unit increase	Affymetrix [321114] (imputed)	N
1227	chr15	84151486	84151487	rs4577046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs4577046-A	NR	5E-8		0.0219121	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1227	chr15	84176166	84176167	rs148739641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.2	NR	rs148739641-A	0.01568	3E-9	(PCCA)	0.3496	NR unit increase	Illumina [1671387] (imputed)	N
1227	chr15	84176166	84176167	rs148739641	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.2	NR	rs148739641-A	0.01568	2E-9	(PCCB)	0.3807	NR unit increase	Illumina [1671387] (imputed)	N
1227	chr15	84180206	84180207	rs10520580	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.2	NR	rs10520580-A	0.09408	1E-8	(SOD2)	0.9296	NR unit increase	Illumina [1671387] (imputed)	N
1227	chr15	84191425	84191426	rs10048061	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs10048061-G	NR	5E-9		0.018803	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1227	chr15	84191425	84191426	rs10048061	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs10048061-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1227	chr15	84192117	84192118	rs75024542	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	15q25.2	SH3GL3	rs75024542-?	NR	1E-6		0.308	[0.19-0.43] unit decrease	Illumina [6319684] (imputed)	N
1227	chr15	84195226	84195227	rs2220856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2220856-A	NR	4E-11		0.0239137	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1227	chr15	84195226	84195227	rs2220856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs2220856-?	NR	5E-22				Affymetrix [~ 8270000] (imputed)	N
1227	chr15	84202347	84202348	rs1491577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs1491577-A	NR	5E-13		0.0259982	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1227	chr15	84203684	84203685	rs2732151	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs2732151-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1227	chr15	84212703	84212703	rs201269467	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs201269467-CA	NR	5E-9		0.031595	[0.021-0.042] unit increase	Affymetrix [321114] (imputed)	N
1227	chr15	84223042	84223043	rs143616687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs143616687-A	NR	2E-8		0.0542098	[0.035-0.073] unit increase	Affymetrix [321114] (imputed)	N
1227	chr15	84224355	84224356	rs56026818	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	15q25.2	SH3GL3	rs56026818-T	NR	4E-6				Illumina [up to 3935887] (imputed)	N
1227	chr15	84236463	84236464	rs77847383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs77847383-C	NR	1E-8		0.0202174	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1227	chr15	84238743	84238744	rs72760378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs72760378-C	NR	3E-8		0.0172737	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1227	chr15	84240120	84240121	rs77378263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs77378263-C	NR	4E-9		0.0347218	[0.023-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1227	chr15	84240120	84240121	rs77378263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs77378263-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1227	chr15	84246939	84246940	rs1896800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs1896800-G	NR	5E-9		0.0168732	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1227	chr15	84249459	84249460	rs17158807	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	15q25.2	NR	rs17158807-T	0.0822	3E-6		0.0412	[0.024-0.058] unit increase	Illumina [up to 1980188] (imputed)	N
1227	chr15	84252060	84252061	rs10152514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs10152514-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1227	chr15	84253101	84253102	rs80194486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs80194486-C	NR	1E-11		0.0238675	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1227	chr15	84254261	84254262	rs2732159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2732159-G	NR	1E-12		0.0254585	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
1227	chr15	84254261	84254262	rs2732159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2732159-G	NR	6E-11		0.0232472	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
1227	chr15	84254261	84254262	rs2732159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2732159-G	NR	6E-11		0.0252605	[0.018-0.033] unit increase	Affymetrix [323123] (imputed)	N
1227	chr15	84257743	84257744	rs6602982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs6602982-?	NR	3E-42				NR [~ 8900000] (imputed)	N
1227	chr15	84260541	84260542	rs141308780	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q25.2	NR	rs141308780-G	NR	3E-6		1.2987013	[NR]	Illumina [7158791] (imputed)	N
1227	chr15	84261689	84261690	rs66650179	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	15q25.2	SH3GL3	rs66650179-?	0.81	4E-12		0.042	[0.03-0.054] unit decrease	Affymetrix [27624732] (imputed)	N
1227	chr15	84265889	84265890	rs2585073	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2585073-C	NR	2E-14		0.0239078	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1227	chr15	84265889	84265890	rs2585073	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs2585073-G	0.663327	3E-24		0.0721389	[0.058-0.086] unit decrease	Affymetrix [17914406] (imputed)	N
1227	chr15	84265889	84265890	rs2585073	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	15q25.2	SH3GL3	rs2585073-C	0.349	6E-7		0.035	[0.021-0.049] unit increase	Illumina [33400000] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2257011-T	NR	2E-25		0.0297641	[0.024-0.035] unit increase	Affymetrix [321114] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2257011-T	NR	6E-10		0.0181764	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2257011-T	NR	2E-38		0.0365965	[0.031-0.042] unit increase	Affymetrix [321016] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2257011-T	NR	1E-19		0.0279971	[0.022-0.034] unit increase	Affymetrix [323123] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2257011-T	NR	6E-11		0.0187397	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1227	chr15	84266144	84266145	rs2257011	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q25.2	SH3GL3	rs2257011-T	0.497	1E-47		0.044	[0.038-0.05] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1227	chr15	84268919	84268920	rs13379579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs13379579-C	NR	2E-11		0.021039	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
1227	chr15	84269446	84269447	rs8041992	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.2	NR	rs8041992-T	0.27	5E-9		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1227	chr15	84269446	84269447	rs8041992	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.2	NR	rs8041992-T	0.27	4E-12			[NR]	Affymetrix [9886854] (imputed)	N
1227	chr15	84269446	84269447	rs8041992	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	15q25.2	NR	rs8041992-T	0.27	5E-9		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1227	chr15	84269446	84269447	rs8041992	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	15q25.2	NR	rs8041992-T	0.27	7E-6		0.87	[0.81-0.92]	Affymetrix [9886854] (imputed)	N
1227	chr15	84270942	84270943	rs2732162	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2732162-T	NR	1E-37		0.0383234	[0.032-0.044] unit decrease	Affymetrix [321016] (imputed)	N
1227	chr15	84273779	84273780	rs12148209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q25.2		rs12148209-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1227	chr15	84274590	84274591	rs1896797	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs1896797-A	NR	2E-8		0.0175403	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1227	chr15	84274590	84274591	rs1896797	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	15q25.2	SH3GL3	rs1896797-A	0.4904	2E-34		0.0292	[0.024-0.034] unit increase	Affymetrix [19819130] (imputed)	N
1227	chr15	84274590	84274591	rs1896797	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	15q25.2	SH3GL3	rs1896797-A	0.4904	2E-20		0.0218	[0.017-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1227	chr15	84274979	84274980	rs1896796	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q25.2	SH3GL3	rs1896796-A	0.583	3E-6		0.0384	[0.022-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1227	chr15	84274979	84274980	rs1896796	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	SH3GL3	rs1896796-A	0.5837	4E-6		0.0299	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1228	chr15	84281804	84281805	rs11852824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs11852824-T	NR	4E-10		0.0355593	[0.024-0.047] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84284551	84284552	rs2585058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2585058-A	NR	5E-22		0.0297951	[0.024-0.036] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84285353	84285354	rs2585059	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.2	NR	rs2585059-C	0.42	2E-6		0.92	[0.89-0.95]	Affymetrix [9886854] (imputed)	N
1228	chr15	84285353	84285354	rs2585059	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	15q25.2	NR	rs2585059-C	0.42	2E-11			[NR]	Affymetrix [9886854] (imputed)	N
1228	chr15	84285353	84285354	rs2585059	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	15q25.2	NR	rs2585059-C	0.42	2E-6		0.92	[0.89-0.95]	Affymetrix [9886854] (imputed)	N
1228	chr15	84285353	84285354	rs2585059	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	15q25.2	NR	rs2585059-C	0.42	3E-7		0.93	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2562784-G	NR	1E-17		0.0299347	[0.023-0.037] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2562784-G	NR	2E-9		0.0227076	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2562784-G	NR	4E-18		0.0300574	[0.023-0.037] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2562784-G	NR	4E-14		0.0286335	[0.021-0.036] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	SH3GL3	rs2562784-A	0.7709	2E-6		0.0364	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1228	chr15	84286491	84286492	rs2562784	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	15q25.2	SH3GL3, ADAMTSL3	rs2562784-G	0.17	6E-8		0.34	[0.21-0.48] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
1228	chr15	84293341	84293342	rs1365200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs1365200-G	NR	8E-23		0.0319121	[0.026-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84293883	84293884	rs11857564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs11857564-A	NR	3E-12		0.0412667	[0.03-0.053] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84295172	84295173	rs2585070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2585070-C	NR	2E-10		0.0207006	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1228	chr15	84296162	84296163	rs74556322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs74556322-G	NR	4E-8		0.0349292	[0.022-0.047] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84298597	84298598	rs2244838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2244838-C	NR	8E-15		0.0269182	[0.02-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84299008	84299009	rs28878227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs28878227-C	NR	4E-11		0.0187848	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84300653	84300654	rs2730101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	SH3GL3	rs2730101-A	NR	5E-13		0.0208909	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84300653	84300654	rs2730101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs2730101-A	NR	4E-20		0.028497	[0.022-0.035] unit decrease	Affymetrix [323123] (imputed)	N
1228	chr15	84300726	84300727	rs7162245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	SH3GL3	rs7162245-A	NR	2E-8		0.0182177	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84301040	84301041	rs4606681	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs4606681-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1228	chr15	84305443	84305444	rs2585043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs2585043-G	NR	2E-17		0.0288612	[0.022-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84305443	84305444	rs2585043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs2585043-G	NR	1E-17		0.0265523	[0.02-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1228	chr15	84312567	84312568	rs2562781	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q25.2	ADAMTSL3	rs2562781-A	0.7864	2E-9		0.0589	[0.04-0.078] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1228	chr15	84314440	84314441	rs2730075	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs2730075-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1228	chr15	84315883	84315884	rs2554380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs2554380-C	NR	4E-11		0.0249944	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1228	chr15	84315883	84315884	rs2554380	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	15q25.2	SH3GL3, ADAMTSL3	rs2554380-T	0.78	9E-7		4.5	[2.74-6.26] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1228	chr15	84323724	84323725	rs59144084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs59144084-T	NR	9E-12		0.030201	[0.022-0.039] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84325334	84325335	rs71395419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs71395419-G	NR	4E-8		0.024726	[0.016-0.034] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84325334	84325335	rs71395419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs71395419-G	NR	4E-8		0.0244435	[0.016-0.033] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84325334	84325335	rs71395419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs71395419-G	NR	5E-9		0.0283858	[0.019-0.038] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84325759	84325760	rs75821416	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs75821416-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1228	chr15	84330652	84330653	rs12148469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12148469-G	NR	1E-9		0.0189117	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84330652	84330653	rs12148469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12148469-G	NR	9E-12		0.0194504	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84330652	84330653	rs12148469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12148469-G	NR	2E-10		0.0198399	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84332771	84332772	rs1016355	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	15q25.2		rs1016355-T	0.58	2E-8		0.026	L decrease	Affymetrix [NR] (imputed)	N
1228	chr15	84335452	84335453	rs72761821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs72761821-T	NR	5E-10		0.0468228	[0.032-0.062] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84338641	84338642	rs117540214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs117540214-G	NR	2E-9		0.0376992	[0.025-0.05] unit decrease	Affymetrix [323123] (imputed)	N
1228	chr15	84339435	84339436	rs8038454	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q25.2	ADAMTSL3	rs8038454-?	NR	4E-11		0.024526376	[0.017-0.032] unit increase	Illumina [27896057] (imputed)	N
1228	chr15	84347750	84347751	rs2585061	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	15q25.2	ADAMTSL3	rs2585061-A	0.2074	1E-8		0.0442	[0.029-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1228	chr15	84347750	84347751	rs2585061	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	ADAMTSL3	rs2585061-A	0.2085	5E-13		0.0555	[0.04-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1228	chr15	84349088	84349089	rs2217065	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs2217065-G	NR	5E-12		0.0213472	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84352091	84352092	rs72761831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs72761831-G	NR	2E-10		0.0295301	[0.02-0.039] unit increase	Affymetrix [321788] (imputed)	N
1228	chr15	84361517	84361518	rs11259916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs11259916-A	NR	1E-13		0.0254418	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84361517	84361518	rs11259916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11259916-A	NR	6E-17		0.0261966	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1228	chr15	84361517	84361518	rs11259916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q25.2	Intergenic	rs11259916-A	0.2834	2E-8	(MTAG)	0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1228	chr15	84361517	84361518	rs11259916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	15q25.2	Intergenic	rs11259916-A	0.2834	4E-8		0.0174	[0.011-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1228	chr15	84374727	84374728	rs9788726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs9788726-G	NR	8E-9		0.0178599	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84375800	84375801	rs1544876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs1544876-T	NR	5E-26		0.0387812	[0.032-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1228	chr15	84375800	84375801	rs1544876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs1544876-T	NR	2E-10		0.0222759	[0.015-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1228	chr15	84382797	84382798	rs7166410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7166410-G	NR	3E-8		0.0208317	[0.013-0.028] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84383061	84383062	rs7165624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7165624-C	NR	4E-8		0.0227882	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84383061	84383062	rs7165624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7165624-C	NR	3E-8		0.0227329	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
1228	chr15	84392906	84392907	rs10152300	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q25.2	ADAMTSL3	rs10152300-G	0.23	4E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
1228	chr15	84395901	84395901	rs540979697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs540979697-AT	NR	2E-9		0.0184345	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1228	chr15	84395901	84395901	rs540979697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs540979697-AT	NR	7E-11		0.0215591	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
1228	chr15	84395968	84395969	rs8032414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs8032414-G	NR	2E-32		0.0398937	[0.033-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1228	chr15	84405573	84405574	rs7169595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7169595-T	NR	2E-9		0.0183588	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1228	chr15	84405573	84405574	rs7169595	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs7169595-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84412826	84412827	rs113261930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs113261930-T	NR	4E-12		0.0352419	[0.025-0.045] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84412826	84412827	rs113261930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs113261930-T	NR	2E-10		0.0347538	[0.024-0.045] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84419314	84419314	rs551555687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs551555687-CT	NR	2E-8		0.0161108	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84419314	84419314	rs551555687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs551555687-CT	NR	9E-11		0.0201541	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84419314	84419314	rs551555687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs551555687-CT	NR	4E-14		0.0214939	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84419314	84419314	rs551555687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs551555687-CT	NR	7E-10		0.0190564	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84420366	84420367	rs9920704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q25.2		rs9920704-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1229	chr15	84422505	84422506	rs7182216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q25.2		rs7182216-C	0.2277	1E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1229	chr15	84422505	84422506	rs7182216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q25.2	Intergenic	rs7182216-C	0.2277	2E-10	(MTAG)	0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1229	chr15	84426579	84426580	rs55685171	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs55685171-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84432866	84432867	rs1863449	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q25.2		rs1863449-C	0.39	1E-10		6.43	z score increase	Affymetrix [9061022] (imputed)	N
1229	chr15	84432866	84432867	rs1863449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs1863449-C	NR	1E-12		0.0204174	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84432866	84432867	rs1863449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs1863449-C	NR	8E-15		0.0241804	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84432866	84432867	rs1863449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs1863449-C	NR	3E-18		0.0270424	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84434422	84434423	rs1122405	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q25.2	NR	rs1122405-A	0.4308	5E-11				NR [9056863] (imputed)	N
1229	chr15	84434422	84434423	rs1122405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs1122405-A	NR	4E-20		0.0262308	[0.021-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1229	chr15	84434422	84434423	rs1122405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.2		rs1122405-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1229	chr15	84435530	84435531	rs11856314	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q25.2		rs11856314-C	0.39	2E-29		11.26	z score increase	Affymetrix [9061022] (imputed)	N
1229	chr15	84436516	84436517	rs12898714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12898714-G	NR	4E-15		0.0292972	[0.022-0.037] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84436516	84436517	rs12898714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12898714-G	NR	2E-16		0.0332309	[0.025-0.041] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84438292	84438293	rs118136305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs118136305-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1229	chr15	84445117	84445118	rs62025778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs62025778-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84445700	84445700	rs67503271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs67503271-T	NR	8E-31		0.0381807	[0.032-0.045] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84454828	84454829	rs56711701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs56711701-G	NR	4E-9		0.020673	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84455088	84455089	rs142034143	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q25.2	ADAMTSL3	rs142034143-G	0.00806453706774969	8E-8	(G_unclassified_P_Firmicutes_HB)	1.61015	[1.02-2.2] unit decrease	Illumina [7711310] (imputed)	N
1229	chr15	84456495	84456496	rs35946026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs35946026-T	NR	7E-17		0.0262244	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84456495	84456496	rs35946026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs35946026-T	NR	6E-16		0.0276012	[0.021-0.034] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84456495	84456496	rs35946026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs35946026-T	NR	2E-27		0.033768	[0.028-0.04] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84456495	84456496	rs35946026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs35946026-T	NR	2E-20		0.0314514	[0.025-0.038] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84456495	84456496	rs35946026	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs35946026-T	0.287295	3E-11		0.0738506	[0.053-0.095] unit decrease	Affymetrix [21375087] (imputed)	N
1229	chr15	84459359	84459360	rs8035886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs8035886-C	NR	7E-15		0.0223498	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84459359	84459360	rs8035886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs8035886-C	NR	4E-19		0.0278134	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84459359	84459360	rs8035886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs8035886-C	NR	5E-31		0.0329448	[0.027-0.039] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84459359	84459360	rs8035886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs8035886-C	NR	4E-17		0.0260399	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84459359	84459360	rs8035886	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs8035886-?	NR	2E-34				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84460868	84460869	rs28781400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs28781400-A	NR	4E-8		0.0171587	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84460868	84460869	rs28781400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs28781400-A	NR	2E-9		0.0178151	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1229	chr15	84461861	84461862	rs77510589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs77510589-G	NR	4E-9		0.0296846	[0.02-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1229	chr15	84471635	84471636	rs4843158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4843158-G	NR	4E-23		0.0303029	[0.024-0.036] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84473530	84473531	rs7179507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7179507-G	NR	5E-10		0.0190478	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1229	chr15	84483727	84483728	rs774284803	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.2		rs774284803-A	0.027	7E-9		0.7003	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1229	chr15	84484383	84484384	rs59199978	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	15q25.2	ADAMTSL3	rs59199978-A	0.82	4E-9		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1229	chr15	84486668	84486669	rs113817743	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs113817743-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84488032	84488033	rs113816378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs113816378-C	NR	5E-12		0.0328503	[0.024-0.042] unit increase	Affymetrix [321788] (imputed)	N
1229	chr15	84488635	84488636	rs4483821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4483821-G	NR	3E-19		0.0257177	[0.02-0.031] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84489048	84489049	rs4583201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs4583201-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1229	chr15	84489801	84489802	rs11259919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11259919-A	NR	2E-17		0.0279862	[0.022-0.034] unit decrease	Affymetrix [321788] (imputed)	N
1229	chr15	84489801	84489802	rs11259919	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs11259919-G	0.724529	4E-12		0.0754959	[0.054-0.097] unit decrease	Affymetrix [21375087] (imputed)	N
1229	chr15	84490756	84490757	rs6602994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs6602994-T	NR	5E-51		0.0475521	[0.041-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1229	chr15	84491202	84491203	rs376854269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs376854269-G	NR	1E-17		0.0262288	[0.02-0.032] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84491202	84491203	rs376854269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs376854269-G	NR	3E-13		0.0242349	[0.018-0.031] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84491202	84491203	rs376854269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs376854269-G	NR	1E-23		0.030426	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84491202	84491203	rs376854269	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs376854269-G	NR	1E-18		0.0292744	[0.023-0.036] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84493101	84493102	rs7164187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7164187-A	NR	2E-13		0.0230831	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84493101	84493102	rs7164187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7164187-A	NR	3E-14		0.0226775	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
1229	chr15	84493101	84493102	rs7164187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7164187-A	NR	1E-32		0.0341805	[0.029-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1229	chr15	84493101	84493102	rs7164187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7164187-A	NR	2E-18		0.0273665	[0.021-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84493650	84493651	rs5015595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3, RNU6-1339P	rs5015595-C	NR	2E-25		0.032484	[0.026-0.039] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84493650	84493651	rs5015595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3, RNU6-1339P	rs5015595-C	NR	2E-14		0.0226465	[0.017-0.028] unit increase	Affymetrix [321788] (imputed)	N
1229	chr15	84493650	84493651	rs5015595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3, RNU6-1339P	rs5015595-C	NR	1E-42		0.0389313	[0.033-0.045] unit increase	Affymetrix [321016] (imputed)	N
1229	chr15	84493650	84493651	rs5015595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3, RNU6-1339P	rs5015595-C	NR	6E-28		0.033931	[0.028-0.04] unit increase	Affymetrix [323123] (imputed)	N
1229	chr15	84493650	84493651	rs5015595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3, RNU6-1339P	rs5015595-C	NR	3E-10		0.0197626	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
1229	chr15	84497206	84497207	rs4594227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs4594227-G	NR	3E-22		0.0301515	[0.024-0.036] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84497206	84497207	rs4594227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs4594227-G	NR	1E-8		0.0176726	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1229	chr15	84497206	84497207	rs4594227	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	15q25.2	ADAMTSL3	rs4594227-A	0.56	4E-6		0.035	[0.019-0.051] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1229	chr15	84498331	84498332	rs9888644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs9888644-A	NR	2E-8		0.0181373	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84498944	84498945	rs4620919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4620919-C	NR	2E-12		0.0203637	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84500460	84500461	rs56144439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs56144439-A	NR	8E-9		0.0268155	[0.018-0.036] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84502198	84502199	rs7164782	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q25.2	NR	rs7164782-C	0.2913	2E-17				NR [9056863] (imputed)	N
1229	chr15	84502198	84502199	rs7164782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7164782-C	NR	1E-31		0.0399083	[0.033-0.047] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84502198	84502199	rs7164782	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7164782-C	NR	1E-14		0.0263897	[0.02-0.033] unit decrease	Affymetrix [323858] (imputed)	N
1229	chr15	84502198	84502199	rs7164782	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs7164782-T	0.711908	8E-39		0.0967257	[0.082-0.111] unit decrease	Affymetrix [17914406] (imputed)	N
1229	chr15	84504478	84504479	rs12443111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12443111-G	NR	1E-10		0.0230844	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7162542-C	NR	4E-8		0.0172273	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7162542-C	NR	2E-10		0.0201045	[0.014-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7162542-C	NR	3E-44		0.0432839	[0.037-0.049] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7162542-C	NR	1E-30		0.0355244	[0.029-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs7162542-C	NR	2E-19		0.0281245	[0.022-0.034] unit decrease	Affymetrix [323858] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q25.2	ADAMTSL3	rs7162542-C	0.442849	4E-11		0.00931445	[0.0065-0.0121] unit increase	Affymetrix [12370749]	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs7162542-G	0.5582	9E-27	(EA)	0.0401	[0.033-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs7162542-G	0.5582	8E-15	(EA, women)	0.0381	[0.028-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs7162542-G	0.5582	5E-24	(EA)	0.0435	[0.035-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs7162542-G	0.5576	2E-14	(EA,women)	0.0421	[0.031-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs7162542-?	0.5582	2E-14	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs7162542-?	0.5582	1E-25	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	5E-24		0.0391	[0.031-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	4E-11	(women)	0.0327	[0.023-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	2E-16	(men)	0.0479	[0.037-0.059] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	5E-25				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	5E-12	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	2E-16	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	2E-23		0.0342	[0.028-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	2E-12	(women)	0.0311	[0.022-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q25.2	ADAMTSL3	rs7162542-C	0.4275	1E-14	(men)	0.0381	[0.028-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4437	3E-16	(EA, men)	0.0391	[0.03-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4437	1E-28	(EA)	0.0379	[0.031-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4437	1E-17	(EA,women)	0.0369	[0.028-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4427	5E-14	(EA,men)	0.0381	[0.028-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4427	2E-30	(EA)	0.0408	[0.034-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7162542-C	0.4427	1E-20	(EA, women)	0.0426	[0.034-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1229	chr15	84514289	84514290	rs7162542	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q25.2	ADAMTSL3	rs7162542-C	0.447	8E-55		0.046	[0.04-0.052] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1229	chr15	84515942	84515943	rs4523894	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	15q25.2	ADAMTSL3	rs4523894-C	0.9	5E-11	(conditional on rs10152300)	1.12	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1229	chr15	84521397	84521398	rs6602997	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q25.2		rs6602997-T	0.71	4E-30				NR [NR] (imputed)	N
1229	chr15	84521397	84521398	rs6602997	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q25.2		rs6602997-T	0.71	6E-43		0.022	% increase	NR [NR] (imputed)	N
1229	chr15	84522754	84522755	rs1383484	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q25.2	ADAMTSL3	rs1383484-T	0.40	9E-7		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1229	chr15	84531498	84531499	rs58994367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs58994367-G	NR	5E-19		0.0258935	[0.02-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84531498	84531499	rs58994367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs58994367-G	NR	3E-12		0.0220018	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1229	chr15	84531498	84531499	rs58994367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs58994367-G	NR	9E-18		0.0246909	[0.019-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1229	chr15	84531498	84531499	rs58994367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs58994367-G	NR	5E-12		0.0215862	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1229	chr15	84531498	84531499	rs58994367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs58994367-G	NR	4E-8		0.0160247	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1229	chr15	84531694	84531695	rs143253231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs143253231-A	NR	4E-10		0.0179876	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1229	chr15	84536998	84536999	rs4842918	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs4842918-?	NR	1E-62				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84542944	84542945	rs56100529	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q25.2		rs56100529-T	0.27	2E-16		8.21	z score increase	Affymetrix [9061022] (imputed)	N
1230	chr15	84542944	84542945	rs56100529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs56100529-T	NR	2E-28		0.0350638	[0.029-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84542944	84542945	rs56100529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs56100529-T	NR	1E-17		0.0226339	[0.016-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1230	chr15	84546411	84546412	rs28728297	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	ADAMTSL3	rs28728297-A	0.1964	7E-6		0.0362	[0.02-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr15	84546838	84546839	rs7170165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7170165-G	NR	2E-27		0.0317378	[0.026-0.037] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84546838	84546839	rs7170165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs7170165-G	NR	2E-29		0.0325051	[0.027-0.038] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84546838	84546839	rs7170165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	15q25.2		rs7170165-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1230	chr15	84547221	84547222	rs1812707	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	15q25.2		rs1812707-?	NR	3E-8		0.034	[0.022-0.046] unit increase	Affymetrix [9906178] (imputed)	N
1230	chr15	84547221	84547222	rs1812707	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q25.2	NR	rs1812707-C	0.4367	6E-9		0.0227	[0.015-0.03] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1230	chr15	84552514	84552515	rs62025854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs62025854-T	NR	4E-25		0.0353474	[0.029-0.042] unit decrease	Affymetrix [323123] (imputed)	N
1230	chr15	84553622	84553623	rs12907220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12907220-A	NR	4E-8		0.0350353	[0.023-0.048] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84556290	84556291	rs72746993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs72746993-T	NR	3E-10		0.0508323	[0.035-0.067] unit increase	Affymetrix [321788] (imputed)	N
1230	chr15	84556622	84556623	rs4842921	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	15q25.2	ADAMTSL3	rs4842921-A	0.387483001290179	1E-9		0.040709324	[0.028-0.054] unit decrease	Affymetrix [35186738] (imputed)	N
1230	chr15	84556622	84556623	rs4842921	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	15q25.2	ADAMTSL3	rs4842921-G	0.605551	5E-10		1.0389574	[1.02653646878929-1.05152843953779]	NR [9572556] (imputed)	N
1230	chr15	84556622	84556623	rs4842921	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q25.2	NR	rs4842921-G	NR	3E-6				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84556622	84556623	rs4842921	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	15q25.2	NR	rs4842921-G	NR	3E-6				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84556622	84556623	rs4842921	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	15q25.2	NR	rs4842921-G	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84557675	84557676	rs2401171	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs2401171-?	NR	2E-8		0.03604502	[0.024-0.049] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84557675	84557676	rs2401171	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q25.2	ADAMTSL3	rs2401171-T	0.26	4E-21		0.052	[0.038-0.066] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1230	chr15	84560715	84560716	rs57548773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs57548773-T	NR	3E-18		0.0335985	[0.026-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84560715	84560716	rs57548773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs57548773-T	NR	4E-9		0.0227885	[0.015-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1230	chr15	84561878	84561879	rs899927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.2		rs899927-?	NR	4E-44				NR [~ 8900000] (imputed)	N
1230	chr15	84562602	84562603	rs62025857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs62025857-G	NR	8E-20		0.0380598	[0.03-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84562739	84562740	rs4414460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs4414460-G	NR	3E-19		0.0296211	[0.023-0.036] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84562739	84562740	rs4414460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs4414460-G	NR	8E-10		0.0203626	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
1230	chr15	84566247	84566248	rs11259926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11259926-G	NR	6E-11		0.0201249	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84566247	84566248	rs11259926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs11259926-G	NR	5E-12		0.0229428	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84566247	84566248	rs11259926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11259926-G	NR	7E-18		0.0262172	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84566247	84566248	rs11259926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs11259926-G	NR	7E-10		0.0203927	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1230	chr15	84566247	84566248	rs11259926	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs11259926-?	NR	7E-21				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84568157	84568158	rs10906982	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs10906982-?	NR	7E-10		0.03907342	[0.027-0.051] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84568157	84568158	rs10906982	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	15q25.2	SH3GL3, ADAMTSL3	rs10906982-A	0.52	5E-7		0.07	[0.03-0.11] SD increase	Illumina [559712] (imputed)	N
1230	chr15	84568157	84568158	rs10906982	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	15q25.2	ADAMTSL3	rs10906982-A	0.52	2E-8		0.05	[0.02-0.07] s.d. increase (males)	Affymetrix [402951]	N
1230	chr15	84569101	84569102	rs7175718	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q25.2	NR	rs7175718-?	NR	2E-9				Affymetrix [NR]	N
1230	chr15	84571835	84571836	rs8036748	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	15q25.2	ADAMTSL3	rs8036748-A	0.462	2E-13		0.049	[0.036-0.061] unit decrease	Illumina [33400000] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs66990951-T	NR	3E-14		0.0228315	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs66990951-T	NR	3E-9		0.0183201	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs66990951-T	NR	1E-22		0.0291511	[0.023-0.035] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs66990951-T	NR	1E-8		0.0185577	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs66990951-T	NR	4E-8		0.0164893	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1230	chr15	84572455	84572456	rs66990951	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q25.2	ADAMTSL3	rs66990951-T	0.3172	7E-9		0.1075	[0.071-0.144] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1230	chr15	84573040	84573041	rs7183263	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs7183263-?	NR	8E-10		0.03894147	[0.027-0.051] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84573040	84573041	rs7183263	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q25.2	ADAMTSL3	rs7183263-T	0.495	5E-8	(EA)	0.0194	[0.012-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1230	chr15	84573040	84573041	rs7183263	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	15q25.2	ADAMTSL3	rs7183263-G	0.52	4E-7		0.07	[0.03-0.11] SD increase	Illumina [559712] (imputed)	N
1230	chr15	84575367	84575367	rs768397327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs768397327-CCACACACCA	NR	4E-58		0.0453217	[0.04-0.051] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84575367	84575367	rs768397327	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs768397327-C	0.515118	1E-15		0.0789401	[0.06-0.098] unit decrease	Affymetrix [21375087] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	4E-44		0.0342	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	3E-71	(females)	0.05776	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ACAN	rs11856122-A	0.478342	6E-14	(females)	0.02011	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ACAN	rs11856122-A	0.478342	1E-12		0.01535	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	7E-24		0.02526	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	4E-52	(females)	0.04845	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ACAN	rs11856122-A	0.478342	9E-10	(females)	0.01543	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ACAN	rs11856122-A	0.478342	1E-10		0.01359	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	3E-20	(males)	0.02638	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	2E-31		0.02842	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84576347	84576348	rs11856122	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q25.2	ADAMTSL3, SH3GL3	rs11856122-G	0.468672	2E-17	(females)	0.0301	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1230	chr15	84577349	84577350	rs11259930	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	15q25.2	ADAMTSL3	rs11259930-A	0.47	1E-12				NR [> 9500000] (imputed)	N
1230	chr15	84578363	84578364	rs2401176	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	3,566 European ancestry individuals	4,680 European ancestry individuals	15q25.2		rs2401176-G	0.482807215	9E-11				Illumina [7417619] (imputed)	N
1230	chr15	84580155	84580156	rs11259933	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs11259933-?	NR	8E-10		0.03902312	[0.027-0.051] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84580155	84580156	rs11259933	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q25.2	ADAMTSL3	rs11259933-A	0.51	1E-19		1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1230	chr15	84580581	84580582	rs11259936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q25.2		rs11259936-C	NR	9E-134		0.033	[0.03-0.036] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1230	chr15	84580581	84580582	rs11259936	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs11259936-?	NR	7E-10		0.03906542	[0.027-0.051] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84580581	84580582	rs11259936	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q25.2	ADAMTSL3	rs11259936-A	0.48	2E-35		0.044	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4842838-G	NR	2E-36		0.0359778	[0.03-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4842838-G	NR	6E-15		0.0222947	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	15q25.2	ADAMTSL3	rs4842838-G	0.47	3E-12		1.07	[1.05 -1.09]	Illumina [at least 109036]	N
1230	chr15	84582123	84582124	rs4842838	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q25.2	NR	rs4842838-?	NR	1E-9		0.03878371	[0.026-0.051] unit increase	Illumina [34656550] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs4842838-T	0.5348	6E-27		0.0377	[0.031-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs4842838-T	0.5348	4E-24		0.0418	[0.034-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs4842838-?	0.5348	7E-26				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84582123	84582124	rs4842838	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	15q25.2	ADAMTSL3	rs4842838-G	0.29	1E-7		0.06	[0.04-0.08] cm decrease	Illumina [420885]	N
1230	chr15	84582123	84582124	rs4842838	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	15q25.2	ADAMTSL3	rs4842838-?	0.32	3E-8		0.06	[0.04-0.07] s.d. decrease	Illumina [229216]	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5353	8E-17	(men)	0.0441	[0.034-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5353	1E-14	(women)	0.0405	[0.03-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5211	7E-15	(EA, men)	0.0435	[0.033-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5443	1E-15	(women)	0.0475	[0.036-0.059] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5291	4E-17	(men)	0.0507	[0.039-0.062] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ADAMTSL3	rs2030839-C	0.5219	8E-16	(EA, men)	0.0499	[0.038-0.062] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-?	0.5353	9E-18	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-?	0.5353	1E-15	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84583958	84583959	rs2030839	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ADAMTSL3	rs2030839-?	0.5211	1E-15	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1230	chr15	84585538	84585538	rs111470917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q25.2		rs111470917-AAAAAT	NR	8E-13		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1230	chr15	84585538	84585538	rs111470917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q25.2		rs111470917-AAAAAT	0.708035	2E-28		0.0245795	[0.02-0.029] unit increase	Illumina [13479295] (imputed)	N
1230	chr15	84585538	84585538	rs111470917	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q25.2	ADAMTSL3	rs111470917-?	NR	7E-37		0.039790712	[0.034-0.046] unit increase	Illumina [27896057] (imputed)	N
1230	chr15	84586462	84586463	rs8024628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs8024628-A	NR	1E-14		0.0227139	[0.017-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1230	chr15	84586462	84586463	rs8024628	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	15q25.2	ADAMTSL3	rs8024628-A	0.4813	4E-9		0.0374	[0.025-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr15	84586462	84586463	rs8024628	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q25.2	ADAMTSL3	rs8024628-A	0.4818	8E-9		0.0453	[0.03-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr15	84586462	84586463	rs8024628	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	ADAMTSL3	rs8024628-A	0.4825	5E-19		0.056	[0.044-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1230	chr15	84587606	84587607	rs4842924	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	15q25.2	ADAMTSL3	rs4842924-?	0.52	7E-10		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
1230	chr15	84587606	84587607	rs4842924	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Appendicular lean mass	27,488 European ancestry individuals, 842 Old Order Amish individuals	42,360 European ancestry individuals, 380 African American individuals, 2,350 Korean ancestry individuals	15q25.2	ADAMTSL3	rs4842924-?	0.52	3E-8		0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
1230	chr15	84588821	84588822	rs906425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs906425-T	NR	9E-14		0.0256026	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84589612	84589613	rs2135880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs2135880-?	NR	3E-222				NR [~ 8900000] (imputed)	N
1230	chr15	84590672	84590672	rs72195885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs72195885-TA	NR	3E-12		0.0305167	[0.022-0.039] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84590909	84590910	rs8030379	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	15q25.2	ADAMTSL3	rs8030379-A	0.756	6E-6	(East Asian women)	0.02371	[0.013-0.034] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1230	chr15	84590909	84590910	rs8030379	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	15q25.2	ADAMTSL3	rs8030379-A	0.756	2E-9	(East Asian)	0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1230	chr15	84590909	84590910	rs8030379	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	15q25.2	ADAMTSL3	rs8030379-A	0.475	9E-27	(non-East Asian)	0.0354	[0.029-0.042] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1230	chr15	84590909	84590910	rs8030379	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	15q25.2	ADAMTSL3	rs8030379-A	0.475	1E-6	(non-East Asian)	0.0166	[0.0099-0.0233] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1230	chr15	84591674	84591675	rs10520572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs10520572-C	NR	2E-9		0.0205026	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84592977	84592978	rs62027787	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs62027787-T	0.156735	1E-8		0.0777523	[0.051-0.104] unit increase	Affymetrix [21375087] (imputed)	N
1230	chr15	84603033	84603034	rs1600640	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q25.2	ADAMTSL3	rs1600640-G	0.822	3E-9	(AA)	0.052	[0.034-0.07] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1230	chr15	84603033	84603034	rs1600640	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q25.2	ADAMTSL3	rs1600640-G		1E-16				Affymetrix, Illumina [17972582] (imputed)	N
1230	chr15	84608487	84608488	rs4842926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs4842926-T	NR	4E-15		0.0244157	[0.018-0.031] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84608487	84608488	rs4842926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4842926-T	NR	1E-10		0.0185485	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
1230	chr15	84608487	84608488	rs4842926	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs4842926-T	0.451411	3E-8		0.0559667	[0.037-0.075] unit decrease	Affymetrix [21375087] (imputed)	N
1230	chr15	84608487	84608488	rs4842926	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs4842926-?	NR	1E-44				Affymetrix [~ 8270000] (imputed)	N
1230	chr15	84614799	84614800	rs11630705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11630705-C	NR	1E-19		0.026479	[0.021-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84614799	84614800	rs11630705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11630705-C	NR	7E-9		0.0167319	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84614799	84614800	rs11630705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs11630705-C	NR	3E-9		0.0173883	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1230	chr15	84614978	84614979	rs11630762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs11630762-C	NR	8E-10		0.0194318	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84614978	84614979	rs11630762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q25.2		rs11630762-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1230	chr15	84615884	84615885	rs149747987	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	15q25.2		rs149747987-T	0.01169	4E-6		3.05	[1.9-4.897]	Affymetrix [7975321] (imputed)	N
1230	chr15	84620866	84620867	rs12912896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12912896-C	NR	9E-11		0.0261286	[0.018-0.034] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84625765	84625766	rs2011013	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	15q25.2	NR	rs2011013-A	0.731	3E-6	(EA)	0.051	[0.029-0.073] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1230	chr15	84629076	84629077	rs6603009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs6603009-A	NR	1E-8		0.0188443	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84636231	84636232	rs112409013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs112409013-G	NR	5E-10		0.0216855	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84637218	84637219	rs138532692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs138532692-G	NR	2E-27		0.0411447	[0.034-0.049] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84637218	84637219	rs138532692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs138532692-G	NR	2E-14		0.0317935	[0.024-0.04] unit decrease	Affymetrix [323123] (imputed)	N
1230	chr15	84637218	84637219	rs138532692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs138532692-G	NR	6E-11		0.0272926	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
1230	chr15	84637218	84637219	rs138532692	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs138532692-G	0.164252	5E-27		0.0982968	[0.08-0.116] unit increase	Affymetrix [17914406] (imputed)	N
1230	chr15	84637349	84637350	rs141495175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs141495175-A	NR	2E-8		0.0253333	[0.016-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84637650	84637651	rs55781136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs55781136-G	NR	1E-12		0.0228553	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1230	chr15	84641017	84641018	rs12148239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12148239-G	NR	1E-8		0.0180985	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1230	chr15	84641124	84641125	rs4842841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4842841-A	NR	3E-18		0.0295482	[0.023-0.036] unit increase	Affymetrix [321016] (imputed)	N
1230	chr15	84647206	84647207	rs906427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q25.2		rs906427-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1230	chr15	84651184	84651185	rs8031704	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	15q25.2		rs8031704-?	NR	1E-8				NR [9705931] (imputed)	N
1230	chr15	84651184	84651185	rs8031704	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q25.2	NR	rs8031704-?	NR	7E-7	(male)	0.13736	[0.083-0.191] unit increase	Affymetrix [7794483] (imputed)	N
1230	chr15	84651184	84651185	rs8031704	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q25.2	NR	rs8031704-?	NR	5E-10	(female)	0.22726	[0.16-0.3] unit increase	Affymetrix [7794483] (imputed)	N
1230	chr15	84651184	84651185	rs8031704	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q25.2	NR	rs8031704-?	NR	1E-15		0.18038	[0.14-0.22] unit increase	Affymetrix [7794483] (imputed)	N
1230	chr15	84660796	84660797	rs144335430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs144335430-T	NR	4E-12		0.0716435	[0.051-0.092] unit increase	Affymetrix [321114] (imputed)	N
1230	chr15	84660796	84660797	rs144335430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs144335430-T	NR	2E-8		0.0583789	[0.038-0.079] unit increase	Affymetrix [323858] (imputed)	N
1230	chr15	84661306	84661307	rs12900471	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.2	NR	rs12900471-C	0.327565	3E-11		0.0684325	[0.048-0.089] unit decrease	Affymetrix [21375087] (imputed)	N
1230	chr15	84661480	84661481	rs11638600	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q25.2	ADAMTSL3	rs11638600-A	0.3276	2E-29		0.0228	[0.019-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
1231	chr15	84680593	84680594	rs4297647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs4297647-C	NR	8E-11		0.0199289	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1231	chr15	84681401	84681402	rs75666428	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs75666428-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1231	chr15	84698063	84698064	rs2895992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs2895992-A	NR	1E-8		0.0169584	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1231	chr15	84698063	84698064	rs2895992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs2895992-A	NR	2E-21		0.0280647	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
1231	chr15	84698063	84698064	rs2895992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs2895992-A	NR	1E-9		0.0195259	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1231	chr15	84699033	84699034	rs12901010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12901010-A	NR	8E-13		0.0247584	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
1231	chr15	84699033	84699034	rs12901010	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	ADAMTSL3	rs12901010-A	NR	5E-10		0.0231244	[0.016-0.03] unit increase	Affymetrix [323123] (imputed)	N
1231	chr15	84699211	84699212	rs62026483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs62026483-A	NR	3E-9		0.0196591	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1231	chr15	84701557	84701558	rs12148842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs12148842-G	NR	1E-8		0.0233941	[0.015-0.031] unit increase	Affymetrix [321788] (imputed)	N
1231	chr15	84702726	84702727	rs2049511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ADAMTSL3	rs2049511-G	NR	2E-11		0.0228777	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1231	chr15	84706460	84706461	rs950169	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.2	ADAMTSL3	rs950169-C	NR	2E-11		1.0822511	[1.06-1.11]	Illumina [6627481] (imputed)	N
1231	chr15	84706460	84706461	rs950169	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.2	ADAMTSL3	rs950169-C	NR	1E-10	(EA)	1.0818998	[1.06-1.11]	Illumina [6627481] (imputed)	N
1231	chr15	84706460	84706461	rs950169	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q25.2	ADAMTSL3, CSPG4P11, CSPG4P5, EFTUD1P1, ZSCAN2	rs950169-C	NR	5E-12		1.0834236	[1.06-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1231	chr15	84706460	84706461	rs950169	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	ADAMTSL3	rs950169-T	0.2831	2E-7		0.0365	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1231	chr15	84706460	84706461	rs950169	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q25.2	NR	rs950169-C	NR	3E-11		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1231	chr15	84706460	84706461	rs950169	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q25.2	ADAMTSL3, GOLGA6L4, ZSCAN2	rs950169-C	0.743	2E-11		1.0834236	[1.06-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
1231	chr15	84713453	84713454	rs141724470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs141724470-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1231	chr15	84729213	84729214	rs11853818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	RP11-342A23.1	rs11853818-T	NR	3E-8		0.0231902	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1231	chr15	84742348	84742349	rs62026494	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs62026494-A	0.120577	2E-15		0.082625	[0.062-0.103] unit increase	Affymetrix [17914406] (imputed)	N
1231	chr15	84743079	84743080	rs140574883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	RP11-342A23.1	rs140574883-G	NR	2E-8		0.0403949	[0.026-0.054] unit increase	Affymetrix [321114] (imputed)	N
1231	chr15	84743079	84743080	rs140574883	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs140574883-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1231	chr15	84746755	84746756	rs138954062	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	RP11-342A23.1	rs138954062-T	NR	3E-8		0.0250186	[0.016-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1231	chr15	84789308	84789309	rs28635520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	EFTUD1P1	rs28635520-C	NR	2E-9		0.0170248	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1231	chr15	84789308	84789309	rs28635520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	EFTUD1P1	rs28635520-C	NR	6E-9		0.0180547	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1231	chr15	84789308	84789309	rs28635520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	EFTUD1P1	rs28635520-C	NR	1E-10		0.0189505	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1231	chr15	84789308	84789309	rs28635520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	EFTUD1P1	rs28635520-C	NR	4E-25		0.0292698	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1231	chr15	84789308	84789309	rs28635520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	EFTUD1P1	rs28635520-C	NR	7E-15		0.0240148	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1231	chr15	84792633	84792634	rs12910413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q25.2		rs12910413-A	NR	2E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1232	chr15	84806059	84806060	rs66486766	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q25.2	NR	rs66486766-?	NR	5E-11				Illumina [up to 5582932] (imputed)	N
1232	chr15	84806059	84806060	rs66486766	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA	15q25.2	ADAMTSL3	rs66486766-A		1E-11				NR [NR] (imputed)	N
1232	chr15	84816650	84816651	rs117474129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	EFTUD1P1	rs117474129-A	NR	1E-8		0.0659238	[0.043-0.089] unit decrease	Affymetrix [321788] (imputed)	N
1232	chr15	84834393	84834394	rs11632294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	RP13-262C2.3	rs11632294-C	NR	2E-12		0.0306162	[0.022-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1232	chr15	84858671	84858672	rs7403404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	CSPG4P11	rs7403404-A	NR	1E-12		0.04283	[0.031-0.055] unit decrease	Affymetrix [321016] (imputed)	N
1232	chr15	84915084	84915085	rs73445186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs73445186-T	NR	9E-16		0.0236914	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1232	chr15	84915084	84915085	rs73445186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs73445186-T	NR	4E-8		0.0163937	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1232	chr15	84915084	84915085	rs73445186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs73445186-T	NR	3E-9		0.019116	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1232	chr15	84915084	84915085	rs73445186	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs73445186-G	0.640688	5E-15		0.0540704	[0.04-0.068] unit decrease	Affymetrix [17914406] (imputed)	N
1232	chr15	84915094	84915095	rs73445187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs73445187-G	NR	2E-15		0.0237093	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1232	chr15	84915094	84915095	rs73445187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs73445187-G	NR	2E-14		0.0246669	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1232	chr15	84915094	84915095	rs73445187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs73445187-G	NR	3E-8		0.0178279	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	2E-20		0.0272537	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	4E-17		0.0266964	[0.02-0.033] unit increase	Affymetrix [321114] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	2E-15		0.0231867	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	6E-10		0.0195583	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	2E-9		0.0177234	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
1232	chr15	84916375	84916376	rs57928261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.2	GOLGA6L4	rs57928261-A	NR	4E-9		0.0187607	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
1232	chr15	84916463	84916464	rs28633164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs28633164-T	NR	5E-10		0.0221646	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1232	chr15	84916463	84916464	rs28633164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	GOLGA6L4	rs28633164-T	NR	2E-10		0.0223306	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1232	chr15	84925264	84925265	rs28552439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q25.2		rs28552439-G	NR	4E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1232	chr15	84931554	84931555	rs11636961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs11636961-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1232	chr15	84932923	84932924	rs7181827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.2		rs7181827-A	0.29009	4E-10		0.015284471	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1233	chr15	84950368	84950369	rs67119537	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	15q25.2		rs67119537-?	NR	3E-13				NR [2625067]	N
1233	chr15	84950368	84950369	rs67119537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	RP11-182J1.14	rs67119537-C	NR	1E-18		0.0272609	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1233	chr15	84950368	84950369	rs67119537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	RP11-182J1.14	rs67119537-C	NR	5E-15		0.0263002	[0.02-0.033] unit increase	Affymetrix [321114] (imputed)	N
1233	chr15	84950368	84950369	rs67119537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	RP11-182J1.14	rs67119537-C	NR	4E-15		0.0241049	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
1233	chr15	84950368	84950369	rs67119537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	RP11-182J1.14	rs67119537-C	NR	5E-13		0.0241876	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
1233	chr15	84950368	84950369	rs67119537	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	15q25.2	NR	rs67119537-T	0.672999999999999	1E-13		0.087800644	[0.065-0.111] unit increase	NR [NR]	N
1233	chr15	84953910	84953911	rs3803396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	DNM1P51	rs3803396-A	NR	4E-18		0.037429	[0.029-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1233	chr15	85059997	85059998	rs375575083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	GOLGA6L5P, RP11-182J1.12	rs375575083-A	NR	3E-9		0.0308126	[0.021-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1233	chr15	85059997	85059998	rs375575083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	GOLGA6L5P, RP11-182J1.12	rs375575083-A	NR	4E-8		0.0282821	[0.018-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1234	chr15	85069495	85069496	rs150969	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs150969-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1234	chr15	85071218	85071219	rs184014477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs184014477-G	NR	2E-8		0.0315547	[0.021-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85072527	85072528	rs62029646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	UBE2Q2P1	rs62029646-C	NR	8E-9		0.0196672	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1234	chr15	85072527	85072528	rs62029646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs62029646-C	NR	6E-10		0.0192285	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85074333	85074334	rs62029649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs62029649-T	NR	1E-9		0.0226126	[0.015-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1234	chr15	85081831	85081832	rs150964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs150964-A	NR	1E-8		0.0260657	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85083040	85083041	rs11073859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.2	UBE2Q2P1	rs11073859-C	NR	2E-9		0.0223023	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1234	chr15	85083040	85083041	rs11073859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs11073859-C	NR	2E-23		0.0337984	[0.027-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85083921	85083922	rs118119200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs118119200-C	NR	9E-10		0.0719607	[0.049-0.095] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85084382	85084383	rs62029652	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.2	UBE2Q2P1	rs62029652-T	NR	3E-10		0.0232228	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1234	chr15	85084382	85084383	rs62029652	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs62029652-?	NR	1E-24				Affymetrix [~ 8270000] (imputed)	N
1234	chr15	85088078	85088079	rs366717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	UBE2Q2P1	rs366717-A	NR	6E-14		0.0257076	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1234	chr15	85088656	85088657	rs3883013	24778558	Domarkiene I	2013-12-01	Balkan J Med Genet	RTN4 and FBXL17 Genes are Associated with Coronary Heart Disease in Genome-Wide Association Analysis of Lithuanian Families.	Coronary heart disease	31 European ancestry cases and 63 European ancestry controls from 32 families	NA	15q25.2	UBE2Q2P1	rs3883013-G	NR	3E-7		29.0	[3.95-212.9]	Illumina [646445]	N
1234	chr15	85089319	85089320	rs193243426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.2		rs193243426-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1234	chr15	85105981	85105982	rs12902973	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	15q25.2	NR	rs12902973-?		4E-10				NR [8377093]	N
1234	chr15	85105981	85105982	rs12902973	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q25.2	UBE2Q2P1	rs12902973-G	NR	9E-11	(EA)	1.082	[1.06-1.11]	Illumina [6627481] (imputed)	N
1234	chr15	85109236	85109237	rs12906474	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	15q25.2	NR	rs12906474-?		5E-12				NR [520857]	N
1234	chr15	85113661	85113662	rs62021164	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.2	NR	rs62021164-T	0.118569	7E-14		0.0788815	[0.058-0.1] unit increase	Affymetrix [17914406] (imputed)	N
1234	chr15	85114267	85114268	rs12905223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.2	NR	rs12905223-?	NR	5E-29				Affymetrix [~ 8270000] (imputed)	N
1234	chr15	85124641	85124642	rs11633534	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q25.2	NR	rs11633534-?	NR	8E-14		1.0806956	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1234	chr15	85125837	85125838	rs12902052	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	15q25.2	ZNF592	rs12902052-A	NR	7E-9		1.088	[1.057-1.120]	Illumina [3742365] (imputed)	N
1234	chr15	85137693	85137694	rs11638445	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q25.2	ZSCAN2	rs11638445-?	NR	3E-10		0.014086767	[0.0097-0.0185] unit increase	NR [7306098]	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8083	2E-8		0.03	[0.019-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8071	6E-9	(EA)	0.0317	[0.021-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8085	5E-6	(women)	0.0426	[0.024-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8083	4E-8		0.0333	[0.021-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8076	2E-6	(men)	0.043	[0.025-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8071	1E-8	(EA)	0.0347	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q25.2	ZSCAN2	rs7176527-C	0.8065	1E-6	(EA, men)	0.0442	[0.026-0.062] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ZSCAN2	rs7176527-?	0.8083	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ZSCAN2	rs7176527-?	0.8071	8E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85140793	85140794	rs7176527	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q25.2	ZSCAN2	rs7176527-?	0.8071	3E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1234	chr15	85149574	85149575	rs748455	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	15q25.2	ZNF592	rs748455-T	0.719	5E-11		1.06983	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1234	chr15	85149574	85149575	rs748455	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	15q25.2	ALPK3	rs748455-T	0.71593	9E-7		0.21998	[0.13-0.31] unit increase	Affymetrix [8590397] (imputed)	N
1234	chr15	85149574	85149575	rs748455	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	15q25.2	NR	rs748455-?		6E-13				NR [8377093]	N
1234	chr15	85152936	85152937	rs2341185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.2	ZSCAN2	rs2341185-G	NR	5E-11		0.0249036	[0.017-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1234	chr15	85153803	85153804	rs71395455	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs71395455-?	NR	2E-12				NR [2625067]	N
1234	chr15	85153803	85153804	rs71395455	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs71395455-A	0.7117	2E-12		0.083049946	[0.06-0.106] unit increase	NR [NR]	N
1234	chr15	85153803	85153804	rs71395455	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		ZSCAN2, WDR73	rs71395455-?		5E-14				NR [6786993] (imputed)	N
1234	chr15	85153803	85153804	rs71395455	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA		NR	rs71395455-A	0.684	4E-8		1.09461		NR [9372253] (imputed)	N
1234	chr15	85157393	85157393	rs112700046	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q25.2	RP11-182J1.5, RP11-182J1.18, ZSCAN2	rs112700046-G	0.8121	9E-8		0.0436	[0.028-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1234	chr15	85162550	85162551	rs7180952	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q25.2	ZSCAN2	rs7180952-T	0.5421	1E-10		0.0984	[0.068-0.128] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1234	chr15	85163604	85163605	rs2036949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q25.2	ZSCAN2	rs2036949-C	NR	3E-8		0.0177196	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1234	chr15	85170173	85170174	rs61394864	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	15q25.2	ZSCAN2, WDR73	rs61394864-C	0.54	1E-9		6.1	z-score increase	Affymetrix [4314223] (imputed)	N
1234	chr15	85178269	85178270	rs6496284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q25.2		rs6496284-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1234	chr15	85187244	85187245	rs34069323	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	15q25.2	WDR73	rs34069323-?	0.01	2E-6	(Age 20-60 years)	6.25	[2.94-14.29]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1234	chr15	85188838	85188839	rs11073619	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	15q25.2	NR	rs11073619-T	0.0999	1E-6		0.0279	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1234	chr15	85191273	85191274	rs7169629	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q25.2	WDR73	rs7169629-C	0.4771	5E-12		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1234	chr15	85191273	85191274	rs7169629	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	15q25.2	WDR73	rs7169629-C	0.5235	2E-11		0.0019	[0.0013-0.0025] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1235	chr15	85200519	85200520	rs1051168	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	15q25.2	NMB	rs1051168-T	0.2591	3E-11		1.0934405	1.06-1.12	Affymetrix, Illumina [up to 7736182] (imputed)	N
1235	chr15	85200519	85200520	rs1051168	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	15q25.2	NMB	rs1051168-T	0.2591	8E-8			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
1235	chr15	85200753	85200754	rs2292462	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	15q25.2	NMB	rs2292462-?	NR	1E-8		0.03284	[0.022-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1235	chr15	85207824	85207825	rs12908161	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q25.2	ADAMTSL3, ALPK3, DNM1P41, EFTUD1P1, GOLGA2P7, GOLGA6L4, GOLGA6L5P, LINC00933, LOC440300, LOC642423, LOC102724034, LOC103171574, NMB, SCAND2P, SEC11A, UBE2Q2L, UBE2Q2P1, WDR73, ZNF592, ZSCAN2	rs12908161-?	NR	9E-10		1.069	[1.05-1.09]	Illumina [8000000] (imputed)	N
1235	chr15	85207824	85207825	rs12908161	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q25.2	NR	rs12908161-A	NR	5E-10		1.08	[NR]	Illumina [7158791] (imputed)	N
1235	chr15	85220112	85220113	rs55945116	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	15q25.2	SEC11A	rs55945116-G	0.7892	6E-7		23.3347	[14.59-32.08] unit increase	Illumina [~ 6000000] (imputed)	N
1235	chr15	85223402	85223403	rs12440825	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q25.2	NR	rs12440825-?	NR	1E-6	(Japanese)	0.6862	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1235	chr15	85248215	85248216	rs12912342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NMB	5,367 Icelandic ancestry individuals	NA	15q25.3		rs12912342-C	0.3338	7E-24		0.195525	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
1235	chr15	85248215	85248216	rs12912342	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.3	NMB	rs12912342-T	0.66109375	8E-11	(NMB, 9321_400_3)	0.1638401	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1235	chr15	85250116	85250117	rs72630462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.3	SEC11A	rs72630462-A	NR	5E-15		0.0303491	[0.023-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1235	chr15	85260267	85260268	rs11073663	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	15q25.3	ZNF592	rs11073663-A	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1235	chr15	85263281	85263282	rs62021222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.3	SEC11A	rs62021222-C	NR	4E-8		0.0178295	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1235	chr15	85266773	85266774	rs35641144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.3	SEC11A	rs35641144-T	NR	4E-8		0.0232923	[0.015-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1235	chr15	85266873	85266873	rs546438579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.3	SEC11A	rs546438579-C	NR	2E-16		0.0235317	[0.018-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1235	chr15	85304445	85304446	rs34162609	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs anorexia nervosa (ordinary least squares (OLS))	20,352 bipolar disorder cases, 16,992 anorexia nervosa cases	NA	15q25.3		rs34162609-?	NR	2E-8		0.0204	NR unit decrease	NR [5569514] (imputed)	N
1235	chr15	85305141	85305142	rs11633788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q25.3		rs11633788-A	NR	2E-16		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1235	chr15	85323219	85323220	rs8023658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q25.3		rs8023658-T	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1235	chr15	85323219	85323220	rs8023658	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	15q25.3		rs8023658-T	0.4834	7E-7		0.52	[0.3-0.74] unit increase	Affymetrix [9800000]	N
1236	chr15	85333395	85333396	rs61074241	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	15q25.3	NR	rs61074241-C	0.754	2E-10		1.08817	[1.06-1.11]	Affymetrix, Illumina [7549318] (imputed)	N
1236	chr15	85336669	85336670	rs12595786	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q25.3	ZNF592	rs12595786-T	0.543976	5E-9	(-182 ms)	0.0329373	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1236	chr15	85336669	85336670	rs12595786	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q25.3	ZNF592	rs12595786-T	0.543976	5E-8	(-176 ms)	0.0300939	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
1236	chr15	85336669	85336670	rs12595786	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q25.3	ZNF592	rs12595786-T	0.543976	1E-8	(-174 ms)	0.031468	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1236	chr15	85349230	85349231	rs35630683	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	15q25.3		rs35630683-?	NR	5E-9		0.0193	NR unit decrease	NR [4425810] (imputed)	N
1236	chr15	85350080	85350081	rs11073729	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	15q25.3	ZNF592	rs11073729-C	0.4579	1E-16		1.2035794	1.11-1.30	Illumina [6530233] (imputed)	N
1236	chr15	85350080	85350081	rs11073729	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	15q25.3	ZNF592	rs11073729-C	0.4579	8E-12		1.1904004	1.13-1.25	Illumina [6530233] (imputed)	N
1236	chr15	85355840	85355841	rs35828350	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	15q25.3		rs35828350-A	0.29	2E-8		1.26		NR [NR] (imputed)	N
1236	chr15	85355840	85355841	rs35828350	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	15q25.3		rs35828350-A	0.28	2E-13		1.21		NR [NR] (imputed)	N
1236	chr15	85355840	85355841	rs35828350	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q25.3	ADAMTSL3, ALPK3, DNM1P41, EFTUD1P1, GOLGA2P7, GOLGA6L4, GOLGA6L5P, LINC00933, LOC102724034, LOC103171574, LOC440300, LOC642423, NMB, SCAND2P, SEC11A, SLC28A1, UBE2Q2L, UBE2Q2P1, WDR73, ZNF592, ZSCAN2	rs35828350-?		6E-11		1.0752687	[1.05-1.11]	Affymetrix, Illumina [NR]	N
1236	chr15	85361643	85361644	rs8039472	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	15q25.3	ALPK3	rs8039472-G	0.5175	4E-12		0.0052	[0.0038-0.0066] unit increase	Affymetrix [~ 9500000] (imputed)	N
1236	chr15	85361643	85361644	rs8039472	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	15q25.3	ALPK3	rs8039472-G	0.5175	4E-7		0.157	[0.096-0.218] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1236	chr15	85361643	85361644	rs8039472	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	15q25.3	ALPK3	rs8039472-G	0.5175	3E-6		0.6186	[0.36-0.88] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1236	chr15	85361643	85361644	rs8039472	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	15q25.3	ALPK3	rs8039472-G	0.5175	2E-10		0.0314	[0.022-0.041] unit increase	Affymetrix [~ 9500000] (imputed)	N
1236	chr15	85364515	85364516	rs2115630	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	15q25.3	ALPK3, NMB	rs2115630-T	0.46	6E-10		85.0	[57.56-112.44] ms x uV increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
1236	chr15	85368418	85368419	rs8024538	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	15q25.3		rs8024538-T	0.528	6E-9		0.03	[0.01-0.05] unit increase	Illumina [26711992] (imputed)	N
1236	chr15	85368418	85368419	rs201517563	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	15q25.3	ALPK3, NMB	rs201517563-TA	0.47	4E-9	(EA)	86.0	[56.6-115.4] ms x uV decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
1236	chr15	85372644	85372645	rs6496452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q25.3	ALPK3	rs6496452-A	0.55	1E-17		0.55	[0.43-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1236	chr15	85372644	85372645	rs6496452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	15q25.3	ALPK3	rs6496452-A	0.557	3E-16		0.5497	[0.42-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1236	chr15	85377014	85377015	rs891288	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q25.3	NR	rs891288-?	NR	6E-7	(Japanese)	0.7142	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1236	chr15	85379277	85379278	rs1429444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.3	ALPK3	rs1429444-T	NR	3E-10		0.019319	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1236	chr15	85385671	85385672	rs60645432	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.3	NR	rs60645432-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1236	chr15	85390912	85390913	rs77566474	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.3	NR	rs77566474-G	0.0989225	3E-10		0.0708944	[0.049-0.093] unit increase	Affymetrix [17914406] (imputed)	N
1236	chr15	85391478	85391478	rs534510478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.3	ALPK3	rs534510478-T	NR	2E-12		0.0327645	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1236	chr15	85415385	85415386	rs12900463	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	15q25.3	ALPK3	rs12900463-C	0.115	4E-6	(Recessive model)	2.154	[1.342-3.457]	Illumina [733202]	N
1236	chr15	85424330	85424331	rs11629531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	15q25.3	SLC28A1	rs11629531-T	NR	4E-8		0.0447983	[0.029-0.061] unit increase	Affymetrix [127266] (imputed)	N
1236	chr15	85429607	85429608	rs12592396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.3	SLC28A1	rs12592396-A	NR	2E-12		0.0563761	[0.041-0.072] unit increase	Affymetrix [321114] (imputed)	N
1236	chr15	85429607	85429608	rs12592396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.3	SLC28A1	rs12592396-A	NR	3E-9		0.0474449	[0.032-0.063] unit increase	Affymetrix [323858] (imputed)	N
1236	chr15	85430953	85430954	rs8187736	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.3	ALPK3	rs8187736-?	NR	9E-7	(LPE 16:0)	0.47951695	[0.29-0.67] unit increase	Affymetrix [at least 2500000] (imputed)	N
1236	chr15	85430968	85430969	rs3743162	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	15q25.3	ZNF592, ALPK3, SLC28A1	rs3743162-?	NR	9E-6		0.88	unit decrease	Illumina [2543888] (imputed)	N
1236	chr15	85430968	85430969	rs3743162	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	15q25.3	SLC28A1, ZNF592, ALPK3	rs3743162-?	NR	9E-6		0.8828	unit decrease	Illumina [2543888] (imputed)	N
1236	chr15	85430999	85431000	rs8187737	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.3	SLC28A1	rs8187737-C	0.986628	8E-11	(N4-acetylcytidine)	0.648	[0.45-0.84] unit increase	Illumina [13039987] (imputed)	N
1236	chr15	85430999	85431000	rs8187737	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.3	SLC28A1	rs8187737-C	0.986628	4E-15	(cytidine)	0.809	[0.61-1.01] unit increase	Illumina [13039987] (imputed)	N
1236	chr15	85430999	85431000	rs8187737	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	15q25.3	SLC28A1	rs8187737-C	0.986628	8E-11	(N4-acetylcytidine)	0.648	[0.45-0.84] unit increase	Illumina [13039987] (imputed)	N
1236	chr15	85430999	85431000	rs8187737	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	15q25.3	SLC28A1	rs8187737-C	0.986628	4E-15	(cytidine)	0.809	[0.61-1.01] unit increase	Illumina [13039987] (imputed)	N
1236	chr15	85435075	85435076	rs7182385	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	15q25.3	SLC28A1	rs7182385-G	0.58	8E-6	(men)	0.094	[0.053-0.135] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1236	chr15	85437092	85437093	rs2007154	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.3	NR	rs2007154-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1236	chr15	85447059	85447060	rs11634491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.3	NR	rs11634491-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1237	chr15	85461850	85461851	rs8187763	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	15q25.3	NR	rs8187763-?	NR	7E-6		0.09635278	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1237	chr15	85464629	85464630	rs1451538	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q25.3	SLC28A1	rs1451538-T	0.07	1E-7	(Japanese)	0.8248	[0.52-1.13] unit decrease	Illumina [6200000] (imputed)	N
1237	chr15	85464629	85464630	rs1451538	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q25.3	SLC28A1	rs1451538-T	0.0653	3E-7	(Japanese)	0.5647	[0.35-0.78] unit decrease	Illumina [6200000] (imputed)	N
1237	chr15	85464629	85464630	rs1451538	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	15q25.3	SLC28A1	rs1451538-?	NR	3E-8		0.04382	[0.028-0.059] unit increase	Illumina [6108953] (imputed)	N
1237	chr15	85466472	85466473	rs117436140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.3		rs117436140-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1237	chr15	85468277	85468278	rs116191689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.3	SLC28A1	rs116191689-T	NR	1E-8		0.0474616	[0.031-0.064] unit increase	Affymetrix [321114] (imputed)	N
1237	chr15	85474206	85474207	rs12915729	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	15q25.3		rs12915729-C	0.41	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1237	chr15	85504752	85504753	rs111460093	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.3	SLC28A1	rs111460093-G	0.929564	3E-12	(N4-acetylcytidine)	0.306	[0.22-0.39] unit increase	Illumina [13039987] (imputed)	N
1237	chr15	85504752	85504753	rs111460093	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	15q25.3	SLC28A1	rs111460093-G	0.929564	1E-17	(cytidine)	0.381	[0.29-0.47] unit increase	Illumina [13039987] (imputed)	N
1237	chr15	85504752	85504753	rs111460093	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	15q25.3	SLC28A1	rs111460093-G	0.929564	3E-12	(N4-acetylcytidine)	0.306	[0.22-0.39] unit increase	Illumina [13039987] (imputed)	N
1237	chr15	85504752	85504753	rs111460093	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	15q25.3	SLC28A1	rs111460093-G	0.929564	1E-17	(cytidine)	0.381	[0.29-0.47] unit increase	Illumina [13039987] (imputed)	N
1237	chr15	85509595	85509596	rs113752636	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.3	NR	rs113752636-G	0.01045	2E-8	(SERPINA1)	2.666	NR unit increase	Illumina [1671387] (imputed)	N
1237	chr15	85509595	85509596	rs113752636	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.3	NR	rs113752636-G	0.01045	2E-8	(EMILIN2)	0.1312	NR unit increase	Illumina [1671387] (imputed)	N
1237	chr15	85519601	85519602	rs35966827	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q25.3	SLC28A1	rs35966827-C	0.970835	2E-9		0.0331715	[0.022-0.044] unit decrease	NR [13737936] (imputed)	N
1237	chr15	85519601	85519602	rs35966827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q25.3		rs35966827-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1237	chr15	85540766	85540767	rs6496586	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q25.3		rs6496586-?	NR	5E-12		0.0196378	[0.014-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1237	chr15	85544049	85544050	rs2290273	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.3	PDE8A	rs2290273-T	0.4886	3E-8		0.1511	[0.098-0.204] mmHg decrease	Affymetrix [NR] (imputed)	N
1237	chr15	85554121	85554122	rs35816571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q25.3	PDE8A	rs35816571-G	NR	5E-11		0.0244658	[0.017-0.032] unit increase	Affymetrix [321016] (imputed)	N
1237	chr15	85554121	85554122	rs35816571	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q25.3	NR	rs35816571-C	0.829285	1E-16		0.0140933	[0.011-0.017] unit increase	Affymetrix [16578495] (imputed)	N
1237	chr15	85558139	85558140	rs12900736	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q25.3	NR	rs12900736-C	0.83019	2E-27		0.0397313	[0.032-0.047] unit increase	Affymetrix [16580851] (imputed)	N
1237	chr15	85563560	85563561	rs71397837	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q25.3	NR	rs71397837-G	0.829736	1E-9		0.0196459	[0.013-0.026] unit increase	Affymetrix [16585745] (imputed)	N
1237	chr15	85564076	85564077	rs62021203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.3		rs62021203-?	NR	5E-22				NR [~ 8900000] (imputed)	N
1237	chr15	85571988	85571989	rs289394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs289394-T	0.511965	1E-10				Affymetrix, Illumina [19872809] (imputed)	N
1237	chr15	85571988	85571989	rs289394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q25.3	NR	rs289394-T	0.562449	3E-12		0.013995	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1237	chr15	85574142	85574143	rs201196042	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q25.3	PDE8A	rs201196042-?	NR	2E-14		0.160049	[0.12-0.2] unit decrease	Illumina [27896057] (imputed)	N
1238	chr15	85605426	85605427	rs56046484	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	15q25.3	SLC28A1, PDE8A	rs56046484-G	0.8	5E-8		1.17	[1.11-1.23]	Illumina [at least 371504] (imputed)	N
1238	chr15	85608047	85608048	rs7402770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	15q25.3		rs7402770-C	NR	2E-8		0.0325	[0.021-0.044] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1238	chr15	85627954	85627955	rs12910668	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	15q25.3	PDE8A	rs12910668-C	0.410342	9E-6		0.335526	[0.19-0.48] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1238	chr15	85635889	85635890	rs8032301	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	15q25.3		rs8032301-T	0.5563	3E-10		0.12436065	[0.083-0.165] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1238	chr15	85637428	85637429	rs77718466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.3	PDE8A	rs77718466-T	NR	3E-8		0.0586104	[0.038-0.079] unit increase	Affymetrix [321114] (imputed)	N
1238	chr15	85645451	85645452	rs8041380	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	15q25.3	PDE8A	rs8041380-C	0.133447	4E-9		0.06845347	[0.046-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
1238	chr15	85660183	85660184	rs7167692	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q25.3	PDE8A	rs7167692-T	0.948323	2E-27		0.0453589	[0.037-0.054] unit increase	NR [13737936] (imputed)	N
1238	chr15	85660183	85660184	rs7167692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q25.3		rs7167692-?	NR	1E-32				NR [~ 8900000] (imputed)	N
1238	chr15	85660183	85660184	rs7167692	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q25.3		rs7167692-?	NR	1E-32		0.0537914	[0.045-0.063] unit increase	Affymetrix [20259828] (imputed)	N
1238	chr15	85673175	85673176	rs6496733	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	15q25.3	EPHA4	rs6496733-?		3E-8				NR [7428630] (imputed)	N
1238	chr15	85680531	85680532	rs3743157	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q25.3		rs3743157-A	0.1665	3E-12		0.23310645	[0.17-0.3] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1238	chr15	85680531	85680532	rs3743157	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q25.3		rs3743157-A	0.1664	4E-8		0.12513694	[0.081-0.17] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1238	chr15	85680531	85680532	rs3743157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q25.3		rs3743157-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1238	chr15	85680531	85680532	rs3743157	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q25.3	PDE8A	rs3743157-A	0.1668	1E-15		0.2602	[0.2-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1238	chr15	85689874	85689875	rs12909477	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q25.3		rs12909477-C	0.32	9E-14		7.45	z score increase	Affymetrix [9061022] (imputed)	N
1238	chr15	85693015	85693016	rs2342118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q25.3		rs2342118-G	0.33	6E-16		8.1	z score increase	Affymetrix [9061022] (imputed)	N
1238	chr15	85693015	85693016	rs2342118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q25.3		rs2342118-G	0.33	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1238	chr15	85693015	85693016	rs2342118	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q25.3	NR	rs2342118-G	0.3208	2E-13				NR [9056863] (imputed)	N
1238	chr15	85694826	85694827	rs143233814	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q25.3	NR	rs143233814-?	NR	2E-8				Illumina [7760689] (imputed)	N
1238	chr15	85699206	85699207	rs8040855	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	15q25.3	PDE8A	rs8040855-C	0.634	3E-6		0.035	[0.021-0.049] unit increase	Illumina [6150213] (imputed)	N
1238	chr15	85702752	85702753	rs6496767	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q25.3	NR	rs6496767-?		4E-6				Illumina [4322238] (imputed)	N
1239	chr15	85725950	85725950	rs35557166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q25.3		rs35557166-TA	NR	1E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1239	chr15	85820854	85820855	rs7403354	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7403354-C	0.808428	2E-17		0.0987345	[0.076-0.122] increase	Affymetrix [11014269] (imputed)	N
1239	chr15	85821623	85821624	rs34896088	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q25.3	AKAP13	rs34896088-C	0.204	3E-13		3.525	[2.58-4.47] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1239	chr15	85825566	85825567	rs6496932	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q25.3	AKAP13	rs6496932-A	0.2	7E-13		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1239	chr15	85825566	85825567	rs6496932	20719862	Vitart V	2010-08-18	Hum Mol Genet	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	15q25.3	PDE8A, AKAP13	rs6496932-C	0.22	1E-8		0.13	[0.09-0.18] unit increase	Illumina [~ 2000000] (imputed)	N
1239	chr15	85825905	85825906	rs12440698	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q25.3	AKAP13	rs12440698-?		5E-8				Affymetrix, Illumina [NR] (imputed)	N
1239	chr15	85838635	85838636	rs4843040	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	15q25.3	AKAP13, ADAMTS7P4	rs4843040-T	0.33	2E-15		2.68	[2.03-3.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1239	chr15	85840911	85840912	rs1828481	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q25.3	AKAP13	rs1828481-?	NA	2E-29		2.68	[2.21-3.15] unit decrease	Affymetrix [5541230] (imputed)	N
1239	chr15	85847805	85847806	rs60331048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q25.3		rs60331048-T	NR	2E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1240	chr15	85873536	85873537	rs6497006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q25.3	ADAMTS7P4	rs6497006-C	0.214259	6E-14		0.020292128	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr15	85889321	85889322	rs2020222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs2020222-T	0.217847	1E-14				Affymetrix, Illumina [22063850] (imputed)	N
1240	chr15	85889321	85889322	rs2020222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q25.3	NR	rs2020222-T	0.209492	2E-16		0.019069	[0.015-0.024] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1240	chr15	85889770	85889771	rs12905673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q25.3		rs12905673-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1240	chr15	85924826	85924827	rs7177469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	15q25.3		rs7177469-T	NR	6E-10		0.0552	[0.038-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1240	chr15	85927947	85927948	rs34573727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q25.3		rs34573727-G	NR	4E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1240	chr15	85939154	85939155	rs28440013	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	15q25.3	AKAP13	rs28440013-A	0.286	4E-10		0.05544952	[0.038-0.073] unit increase	Affymetrix [7288503] (imputed)	N
1240	chr15	85948135	85948136	rs62024517	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q25.3	AKAP13	rs62024517-T	0.7719	2E-8		0.095	[0.062-0.128] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1240	chr15	85966288	85966289	rs7166269	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.3	AKAP13	rs7166269-T	0.7805	4E-10		0.1579	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1241	chr15	86004141	86004142	rs55767890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q25.3		rs55767890-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1241	chr15	86009607	86009608	rs62022112	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q25.3	AKAP13	rs62022112-T	0.7804	2E-9		0.099	[0.065-0.133] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1241	chr15	86011349	86011350	rs6497187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q25.3		rs6497187-G	NR	3E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1241	chr15	86013664	86013665	rs17553790	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q25.3	NR	rs17553790-A	0.58	3E-12		0.0129	[0.0092-0.0166] unit decrease	NR [NR]	N
1241	chr15	86052644	86052645	rs118101215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q25.3	AKAP13	rs118101215-G	NR	5E-12		0.0767984	[0.055-0.099] unit increase	Affymetrix [321114] (imputed)	N
1241	chr15	86052644	86052645	rs118101215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q25.3	AKAP13	rs118101215-G	NR	2E-8		0.0628724	[0.041-0.085] unit increase	Affymetrix [323858] (imputed)	N
1241	chr15	86052644	86052645	rs118101215	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q25.3	NR	rs118101215-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1241	chr15	86056461	86056462	rs2880765	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q25.3	AKAP13	rs2880765-A	0.4929	6E-7		0.0284	[0.017-0.04] unit increase	NR [8041861] (imputed)	N
1241	chr15	86067305	86067306	rs6496044	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	15q25.3	NR	rs6496044-G	0.33	2E-6		1.25	[1.15-1.36]	Illumina [439828]	N
1241	chr15	86077188	86077189	rs2279168	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	15q25.3	AKAP13	rs2279168-?		9E-6				NR [~ 3000000] (imputed)	N
1241	chr15	86079114	86079115	rs35343117	25939698	Tsoi LC	2015-05-05	Nat Commun	Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.	Psoriasis	3,994 European ancestry cases, 7,699 European ancestry controls	6,268 European ancestry cases,  14,172 European ancestry controls, 5,033 cases, 5,707 controls	15q25.3	AKAP13	rs35343117-G	0.34	2E-6		1.1	[NR]	Illumina [696365] (imputed)	N
1241	chr15	86082146	86082147	rs7359225	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q25.3	NR	rs7359225-C	0.519116	7E-9		0.0567186	[0.038-0.076] unit increase	Affymetrix [21375087] (imputed)	N
1241	chr15	86090202	86090203	rs6496086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q25.3	AKAP13	rs6496086-A	0.297448	2E-21		0.02308179	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr15	86097215	86097216	rs62023891	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	15q25.3	AKAP13	rs62023891-A	0.3	1E-10		1.27	[1.18-1.36]	Affymetrix, Illumina [10790934] (imputed)	N
1241	chr15	86110855	86110856	rs12440599	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	15q25.3	NR	rs12440599-T	NR	3E-6	(male)	0.1198	[0.069-0.17] unit decrease	Illumina [11133794] (imputed)	N
1242	chr15	86119325	86119326	rs1026723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q25.3		rs1026723-T	NR	3E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1242	chr15	86119419	86119420	rs1026721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q25.3	AKAP13	rs1026721-C	0.644457	3E-12		0.016180566	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86122778	86122779	rs2061822	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q25.3		rs2061822-T	0.33	6E-13		0.170227	[0.12-0.22] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1242	chr15	86122778	86122779	rs2061822	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	15q25.3		rs2061822-T	0.3301	1E-8		0.09436266	[0.062-0.127] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1242	chr15	86122778	86122779	rs2061822	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	15q25.3		rs2061822-T	0.3396	3E-8		0.079560265	[0.052-0.107] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
1242	chr15	86122778	86122779	rs2061822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q25.3	AKAP13	rs2061822-T	0.326582	2E-11		0.015899513	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr15	86123832	86123833	rs4075256	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	15q25.3		rs4075256-T	0.3651	6E-9		0.086407624	[0.056-0.117] mmHg decrease	Affymetrix, Illumina [247315] (imputed)	N
1242	chr15	86124418	86124419	rs4843073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q25.3	NR	rs4843073-T	0.644889	1E-11		0.013665	[0.0097-0.0176] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1242	chr15	86125606	86125607	rs17570529	34111113	Green HD	2021-06-10	PLoS Genet	A genome-wide association study identifies 5 loci associated with frozen shoulder and implicates diabetes as a causal risk factor.	Frozen shoulder	627,998 European ancestry individuals	NA	15q25.3	NR	rs17570529-T	0.266	3E-9		0.92	[0.94-0.89]	NR [16689279] (imputed)	N
1242	chr15	86125727	86125728	rs8029034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs8029034-G	0.223217	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
1242	chr15	86142543	86142544	rs745727	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs745727-T	0.675689	5E-14		0.0711024	[0.052-0.09] decrease	Affymetrix [11014269] (imputed)	N
1242	chr15	86144099	86144100	rs55981798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q25.3	NR	rs55981798-G	0.232539	7E-15		0.016917	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1242	chr15	86144180	86144181	rs17633959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q25.3	AKAP13	rs17633959-T	0.235511	3E-10		0.016824082	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr15	86147102	86147103	rs4843080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs4843080-A	0.636898	2E-13				Affymetrix, Illumina [23114412] (imputed)	N
1242	chr15	86153323	86153324	rs16942194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q25.3	AKAP13	rs16942194-G	0.057225	2E-10		0.03104709	[0.021-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86160267	86160268	rs55639123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q25.3	AKAP13	rs55639123-G	0.235294	1E-10		0.016842708	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86162922	86162923	rs116944925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	15q25.3	RP11-815J21.4	rs116944925-A	0.056842	1E-9		0.029711137	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86169723	86169724	rs62022865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q25.3	NR	rs62022865-C	0.135641	8E-11		0.017515	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1242	chr15	86170254	86170255	rs10520597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.3		rs10520597-?	NR	1E-34				NR [~ 8900000] (imputed)	N
1242	chr15	86191554	86191555	rs408243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs408243-G	0.645193	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
1242	chr15	86205956	86205957	rs11637216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q25.3		rs11637216-G	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1242	chr15	86207620	86207621	rs7163838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	15q25.3	NR	rs7163838-C	0.236557	6E-15		0.01839	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1242	chr15	86217549	86217550	rs74025655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q25.3	AKAP13	rs74025655-A	0.235893	1E-15		0.02132043	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr15	86224569	86224570	rs12909648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	15q25.3	AKAP13	rs12909648-A	0.478424	2E-11		0.015016067	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr15	86224569	86224570	rs12909648	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q25.3	KLHL25, AKAP13	rs12909648-G	0.522528	3E-18		0.026471	[0.021-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1242	chr15	86224569	86224570	rs12909648	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q25.3	KLHL25, AKAP13	rs12909648-G	0.524104	2E-6		0.012314	[0.0073-0.0174] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1242	chr15	86224569	86224570	rs12909648	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q25.3	AKAP13	rs12909648-A	0.4629	5E-13		0.1911	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1242	chr15	86235506	86235507	rs62022924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q25.3	AKAP13	rs62022924-G	0.235702	2E-11		0.017863065	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86235881	86235882	rs72748160	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	15q25.3	AKAP13	rs72748160-T	0.022	3E-10		1.88	NR	Affymetrix, Illumina [4996193] (imputed)	N
1242	chr15	86239769	86239770	rs78572940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	15q25.3	AKAP13	rs78572940-C	0.235209	1E-13		0.0186497	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr15	86239769	86239770	rs78572940	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs78572940-C	0.226801	2E-13				Affymetrix, Illumina [21126107] (imputed)	N
1242	chr15	86244772	86244773	rs431254	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	15q25.3	RP11-815J21.1	rs431254-C	0.7	9E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
1243	chr15	86247960	86247961	rs7162723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q25.3		rs7162723-C	NR	1E-9		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1243	chr15	86249721	86249722	rs74346567	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	15q25.3		rs74346567-G	0.944	3E-8		0.13	[-0.18--0.09] % decrease	Affymetrix [NR] (imputed)	N
1243	chr15	86249721	86249722	rs74346567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q25.3	AKAP13	rs74346567-A	0.056306	6E-12		0.0331144	[0.024-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr15	86249721	86249722	rs74346567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q25.3	NR	rs74346567-A	0.056826	8E-18		0.033802	[0.026-0.042] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1243	chr15	86249721	86249722	rs74346567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	15q25.3	AKAP13	rs74346567-A	0.0557	8E-9		0.04451132	[0.029-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr15	86252092	86252093	rs338533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q25.3		rs338533-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1243	chr15	86252892	86252892	rs751305863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q25.3		rs751305863-TTTTATTTTATTTTAC	NR	9E-14		0.0203	[0.015-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1243	chr15	86256054	86256055	rs62022941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q25.3		rs62022941-A	NR	3E-15		0.0213	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1243	chr15	86262255	86262256	rs74025667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs74025667-A	0.0545112	2E-16				Affymetrix, Illumina [24246363] (imputed)	N
1243	chr15	86262255	86262256	rs74025667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs74025667-A	0.053766	9E-12				Affymetrix, Illumina [20825802] (imputed)	N
1243	chr15	86262255	86262256	rs74025667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q25.3	NR	rs74025667-A	0.057063	2E-12		0.02933	[0.021-0.037] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1243	chr15	86264510	86264511	rs56241813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q25.3		rs56241813-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1243	chr15	86275999	86276000	rs12907384	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q25.3	NR	rs12907384-?	NR	8E-8	(male)	0.18655	[0.12-0.25] unit decrease	Affymetrix [7794483] (imputed)	N
1243	chr15	86275999	86276000	rs12907384	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q25.3	NR	rs12907384-?	NR	3E-11		0.14652	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1243	chr15	86279655	86279655	rs765475789	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	15q25.3		rs765475789-?,rs765475789-?	NR	2E-8				NR [9705931] (imputed)	N
1243	chr15	86279655	86279655	rs765475789	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	15q25.3		rs765475789-?,rs765475789-?	NR	2E-8				NR [9705931] (imputed)	N
1243	chr15	86283969	86283969	rs71141481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q25.3	AKAP13	rs71141481-AC	0.053082	3E-9		0.03012316	[0.02-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr15	86283969	86283969	rs71141481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q25.3	AKAP13	rs71141481-AC	0.053091	7E-9		0.02952064	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1243	chr15	86283971	86283972	rs560119293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q25.3	NR	rs560119293-A	0.053123	2E-11		0.029774	[0.021-0.038] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1243	chr15	86287723	86287724	rs11629690	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q25.3	AKAP13	rs11629690-G	NR	8E-7		1.0558	NR	Affymetrix, Illumina [8278136] (imputed)	N
1243	chr15	86290602	86290602	rs3833026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	15q25.3		rs3833026-TATCA	NR	3E-11		0.0825	[0.058-0.107] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1243	chr15	86291641	86291642	rs3169122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q25.3		rs3169122-C	NR	3E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1243	chr15	86294108	86294109	rs12913266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q25.3	RP11-158M2.4	rs12913266-A	0.390039	1E-16		0.018807566	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr15	86294108	86294109	rs12913266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q25.3	RP11-158M2.4	rs12913266-A	0.390035	1E-13		0.016868934	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr15	86294108	86294109	rs12913266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs12913266-A	0.33219	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
1243	chr15	86294108	86294109	rs12913266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q25.3	NR	rs12913266-A	0.390921	2E-18		0.017864	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1243	chr15	86294210	86294211	rs35560431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q25.3		rs35560431-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1243	chr15	86295285	86295286	rs11632436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q25.3		rs11632436-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1243	chr15	86295285	86295286	rs11632436	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q25.3	RP11-158M2.4	rs11632436-C	0.5013	5E-17		0.2056	[0.16-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1243	chr15	86297084	86297085	rs35740288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	15q25.3	RP11-158M2.3, RP11-158M2.4	rs35740288-A	0.253	3E-10		0.02598917	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1243	chr15	86297084	86297085	rs35740288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q25.3	RP11-158M2.3, RP11-158M2.4	rs35740288-A	0.2528	2E-11		0.02739297	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1243	chr15	86297084	86297085	rs35740288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	15q25.3	RP11-158M2.3, RP11-158M2.4	rs35740288-A	0.2529	1E-10		0.02663576	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1243	chr15	86300197	86300198	rs62025270	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	15q25.3	AKAP13, KLHL25	rs62025270-A	0.247	1E-9		1.27	[1.18-1.37]	Affymetrix [NR] (imputed)	N
1243	chr15	86302282	86302283	rs888368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	15q25.3		rs888368-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1243	chr15	86312197	86312198	rs139814429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q25.3		rs139814429-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1243	chr15	86316569	86316570	rs8038207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q25.3	NR	rs8038207-T	0.340261	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1243	chr15	86316569	86316570	rs8038207	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q25.3	KLHL25, AKAP13	rs8038207-G	0.567938	8E-12		0.02167	[0.015-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1243	chr15	86316569	86316570	rs8038207	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q25.3	KLHL25, AKAP13	rs8038207-G	0.569417	1E-8		0.01475	[0.0097-0.0198] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1243	chr15	86316859	86316860	rs2542596	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1409 abundance in stool	5,959 Finnish ancestry individuals	NA	15q25.3		rs2542596-G	0.370264	1E-8		0.0645063	[0.042-0.087] unit increase	Illumina [7980478] (imputed)	N
1243	chr15	86322549	86322550	rs76587220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	15q25.3	NR	rs76587220-T	NR	6E-11		0.0247	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1243	chr15	86326347	86326348	rs2455561	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q25.3	NR	rs2455561-G	0.526333	4E-16		0.0549657	[0.042-0.068] unit decrease	Affymetrix [17914406] (imputed)	N
1243	chr15	86329195	86329195	rs576227440	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q25.3	KLHL25	rs576227440-A	0.4603	3E-47		0.0275	[0.024-0.031] unit increase	Affymetrix [18391927] (imputed)	N
1243	chr15	86329427	86329428	rs2542607	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q25.3	AKAP13	rs2542607-?	NR	4E-6	(uridine)	0.18846706	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1243	chr15	86347291	86347292	rs550793660	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q25.3	intergenic	rs550793660-T	0.0083	1E-10		0.0928	[0.065-0.121] unit decrease	Affymetrix [18391927] (imputed)	N
1243	chr15	86369429	86369430	rs7176093	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	15q25.3	KLHL25	rs7176093-?	NR	7E-6	(biologic age)			Affymetrix [70897]	N
1244	chr15	86418089	86418090	rs141509041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Meniere's disease	1,526 European ancestry cases, 481,248 European ancestry controls, 1,290 East Asian ancestry cases, 177,436 East Asian ancestry controls	NA	15q25.3		rs141509041-T	NR	2E-8		1.2512	[0.81-1.69] unit increase	Affymetrix, Illumina [25844443] (imputed)	N
1244	chr15	86462851	86462852	rs4262906	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	15q25.3	KLHL25	rs4262906-C	0.31	7E-7	(Allelic)	4.36	[2.41-7.89]	Illumina [555600]	N
1244	chr15	86462851	86462852	rs4262906	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	15q25.3	KLHL25	rs4262906-C	0.35	3E-6	(Allelic)	2.5	[1.71-3.67]	Illumina [555600]	N
1244	chr15	86486912	86486913	rs570401744	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	15q25.3	RP11-23A22.1	rs570401744-A	0.0013	9E-6		0.926	[0.52-1.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1245	chr15	86537234	86537235	rs150568717	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	15q25.3		rs150568717-T	0.97	2E-9		0.6699	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1245	chr15	86551742	86551743	rs8036358	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q25.3	Intergenic	rs8036358-G	0.842	1E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1245	chr15	86568752	86568753	rs111511310	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	15q25.3	LOC101929701, AGBL1, KLHL25	rs111511310-T	0.025	6E-7		0.22	[0.13-0.31] unit decrease	Illumina [10000000] (imputed)	N
1246	chr15	86660719	86660720	rs12914656	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	15q25.3	LOC100129082, AGBL1	rs12914656-C	0.114	2E-6	(Carbohydrate)			Affymetrix [590000]	N
1246	chr15	86660719	86660720	rs12914656	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	15q25.3	LOC100129082, AGBL1	rs12914656-C	0.114	2E-6	(Carbohydrate)			Affymetrix [590000]	N
1247	chr15	86789977	86789978	rs72752186	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels	629 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 590 Vis (founder/genetic isolate) individuals	NA	15q25.3	AGBL1	rs72752186-T	0.19	7E-7		0.22	[0.14-0.3] pmol/L decrease	Illumina [7411206] (imputed)	N
1247	chr15	86796011	86796012	rs12907323	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	15q25.3	NR	rs12907323-G	0.411	9E-11		0.00871045	[0.0061-0.0113] unit increase	NR [~ 9732723] (imputed)	N
1247	chr15	86796011	86796012	rs12907323	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	15q25.3	NR	rs12907323-G	0.411	1E-8		0.008496596	[0.0056-0.0114] unit increase	NR [~ 10000000] (imputed)	N
1247	chr15	86798777	86798778	rs903975	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	15q25.3	NR	rs903975-T	NR	8E-6		1.1031	NR	Illumina [at least 560000] (imputed)	N
1247	chr15	86808868	86808869	rs11858486	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q25.3	NR	rs11858486-?	NR	4E-6	(Latino)	0.3081	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1247	chr15	86826839	86826840	rs62013859	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	15q25.3	Intergenic	rs62013859-T	NR	4E-7	(between families)	5.094	unit increase	Affymetrix [up to 15107142] (imputed)	N
1247	chr15	86853750	86853751	rs1496876	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	15q25.3	NR	rs1496876-A	0.378	5E-9		0.010397063	[0.0069-0.0139] unit increase	Affymetrix [NR] (imputed)	N
1247	chr15	86854589	86854590	rs10152811	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	15q25.3	AGBL1	rs10152811-A	0.69	8E-7	(AA-triglyceride response)	18.81	[11.32-26.3] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1247	chr15	86859475	86859476	rs12901001	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	15q25.3	NR	rs12901001-?	NR	6E-6	(Circumference)	0.15	[0.091-0.209] unit increase	Illumina [521744]	N
1247	chr15	86867866	86867867	rs28616142	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	15q25.3	AGBL1	rs28616142-T	0.395	3E-8		0.0058	[0.0038-0.0078] unit increase	Affymetrix [~ 7740000] (imputed)	N
1248	chr15	86923553	86923554	rs55645405	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	15q25.3	AGBL1	rs55645405-C	0.4205	2E-9		0.013612035	[0.0085-0.0187] unit increase	NR [9417325] (imputed)	N
1248	chr15	86940621	86940622	rs4362360	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q25.3	NR	rs4362360-C	0.464879771280856	5E-8		0.008012294	[0.0051-0.0109] unit decrease	NR [NR]	N
1248	chr15	86940621	86940622	rs4362360	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	15q25.3	AGBL1	rs4362360-T	0.487107	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1248	chr15	86940621	86940622	rs4362360	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	15q25.3	AGBL1	rs4362360-T	0.5128900000000001	6E-8		5.433	z score increase	Illumina [18485882] (imputed)	N
1248	chr15	86984239	86984240	rs16977195	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	15q25.3	AGBL1	rs16977195-?	0.03	2E-6		6.01	[NR]	Affymetrix [492900]	N
1249	chr15	87053845	87053846	rs2011905	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	15q25.3	AGBL1	rs2011905-C	0.37	2E-6		0.222	[0.13-0.31] unit increase	Illumina [546677]	N
1249	chr15	87064088	87064089	rs12591257	23594818	Ikeda M	2013-04-17	Neuropsychopharmacology	Evidence for shared genetic risk between methamphetamine-induced psychosis and schizophrenia.	Psychosis (methamphetamine induced)	193 East Asian ancestry methamphetamine-dependent cases, 41 East Asian ancestry methamphetamine-dependent controls	NA	15q25.3	KLHL25, AGBL1, LINC00052	rs12591257-A	0.817	4E-6		5.26	[NR]	Affymetrix [244224]	N
1249	chr15	87071808	87071809	rs4516199	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q25.3	NR	rs4516199-?	NR	3E-7			[NR]	Illumina [5779266] (imputed)	N
1250	chr15	87163263	87163264	rs11638062	33891562	Hao Q	2021-04-23	Aging (Albany NY)	Age-related differences of genetic susceptibility to patients with acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (adult)	85 Chinese ancestry cases, 1,466 Chinese ancestry controls	NR	15q25.3	AGBL1	rs11638062-?	NR	5E-6		2.53	[1.70-3.77]	NR [9466286] (imputed)	N
1250	chr15	87163263	87163264	rs11638062	33891562	Hao Q	2021-04-23	Aging (Albany NY)	Age-related differences of genetic susceptibility to patients with acute lymphoblastic leukemia.	Acute lymphoblastic leukemia	466 Chinese ancestry cases, 1,466 Chinese ancestry controls	NR	15q25.3	AGBL1	rs11638062-?		3E-7		1.8	[1.44-2.25]	NR [9466286] (imputed)	N
1250	chr15	87191976	87191977	rs2469184	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	15q25.3	AGBL1	rs2469184-A	NR	4E-8		0.162	[0.081-0.243] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1250	chr15	87193017	87193018	rs2469185	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q25.3	AGBL1	rs2469185-?		3E-7				Illumina [4322238] (imputed)	N
1250	chr15	87253533	87253534	rs10520638	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	15q25.3	AGBL1	rs10520638-T	0.01	1E-7		0.03605	[0.023-0.049] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1251	chr15	87315079	87315080	rs12438353	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	15q25.3	AGBL1	rs12438353-T	0.5	2E-7	(cohort study, AA)	1.39	[1.23-1.57]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1251	chr15	87316164	87316165	rs79848609	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	15q25.3	NR	rs79848609-C		9E-7		0.2603	[0.16-0.37] SD units decrease	NR [10700000] (imputed)	N
1252	chr15	87436744	87436745	rs17647114	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	15q25.3	AGBL1	rs17647114-T	0.03	4E-7	(Citalopram+Bupropion, Vision/hearing-related side effects)			Affymetrix [421789]	N
1252	chr15	87509242	87509243	rs72755680	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	15q25.3	AGBL1, RP11-133L19.1	rs72755680-C	NR	9E-11		0.2041	[0.1262-0.3302]	Illumina [484621]	N
1252	chr15	87530571	87530572	rs1897656	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	15q25.3	AGBL1	rs1897656-?		7E-6	(EA)	0.212	[0.12-0.3] unit decrease	Illumina [7205781] (imputed)	N
1252	chr15	87530571	87530572	rs1897656	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	15q25.3	AGBL1	rs1897656-?	NR	7E-6	(EA)	0.0771	[0.044-0.111] unit decrease	Illumina [7176022] (imputed)	N
1253	chr15	87585251	87585252	rs141501282	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	15q25.3		rs141501282-A	NR	1E-6		0.38143766	[0.23-0.53] decrease	Illumina [6334277] (imputed)	N
1254	chr15	87695510	87695511	rs11636768	21448238	Ligthart L	2011-03-30	Eur J Hum Genet	Meta-analysis of genome-wide association for migraine in six population-based European cohorts.	Migraine	2,116 European ancestry cases, 7,318 European ancestry controls, 330 Dutch founder cases, 1,216 Dutch founder controls	2,957 European ancestry cases, 5,774 European ancestry controls	15q25.3	AGBL1	rs11636768-A	0.15	5E-7		1.248	[NR]	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1254	chr15	87710065	87710066	rs8024343	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	15q25.3	intergenic	rs8024343-A	0.831	6E-6		0.045	[0.025-0.065] unit decrease	Illumina [6150213] (imputed)	N
1254	chr15	87757777	87757778	rs75676075	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	15q25.3	NR	rs75676075-?	NR	7E-6	(AA)	0.5371	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1255	chr15	87828191	87828192	rs150900094	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	15q25.3	AGBL1, LINC00052	rs150900094-C	0.05	5E-7		0.58	[0.34-0.82] unit increase	Illumina [7797256] (imputed)	N
1255	chr15	87920562	87920563	rs2348369	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q25.3		rs2348369-G	0.37	2E-24		10.18	z score increase	Affymetrix [9061022] (imputed)	N
1255	chr15	87945529	87945530	rs2028550	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q25.3	NR	rs2028550-?		4E-10				NR [7428630] (imputed)	N
1256	chr15	87966943	87966944	rs2679084	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	15q25.3	intergenic	rs2679084-T	0.953	1E-6		1.86	[1.44-2.39]	Illumina [8129524] (imputed)	N
1256	chr15	87969447	87969448	rs2584124	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q25.3	NR	rs2584124-G	0.3737	1E-17				NR [9056863] (imputed)	N
1256	chr15	87969447	87969448	rs2584124	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q25.3	NR	rs2584124-G	0.3737	1E-17				NR [9056863] (imputed)	N
1256	chr15	87972701	87972702	rs5814288	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	15q25.3	NR	rs5814288-?		3E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1256	chr15	87973742	87973743	rs935116	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.3	ENSG00000259560	rs935116-A	NR	3E-8		5.555	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1256	chr15	87976994	87976995	rs11630254	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	15q25.3	NR	rs11630254-?		7E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1256	chr15	87977475	87977476	rs2679073	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q25.3	AGBL1	rs2679073-A	0.99	4E-6	(AA)	1.5	[0.85-2.15] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1256	chr15	87987850	87987851	rs1036810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q25.3		rs1036810-G	0.41	1E-58		16.14	z score increase	Affymetrix [9061022] (imputed)	N
1256	chr15	87987850	87987851	rs1036810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q25.3		rs1036810-G	0.41	1E-29		11.31	z score increase	Affymetrix [9061022] (imputed)	N
1256	chr15	87991756	87991757	rs56395531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q25.3		rs56395531-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1256	chr15	88007728	88007729	rs9672259	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	15q25.3	RNF175, SFRP2	rs9672259-?		1E-8				NR [7428630] (imputed)	N
1256	chr15	88052766	88052767	rs11853542	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	15q25.3	Intergenic	rs11853542-?		7E-6		1.36	[NR]	Affymetrix [492217] (imputed)	N
1257	chr15	88128977	88128978	rs35380240	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q25.3		rs35380240-G	0.577	4E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1257	chr15	88131773	88131774	rs4887305	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q25.3	NTRK3	rs4887305-T	0.569	1E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1258	chr15	88213575	88213576	rs78903500	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q25.3	intergenic	rs78903500-G	0.0159602986349413	2E-7	(G_Barnesiella_HB)	1.08949	[0.68-1.5] unit decrease	Illumina [7711310] (imputed)	N
1258	chr15	88272468	88272469	rs4454940	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	15q25.3	Intergenic	rs4454940-?	NR	7E-6		1.3583266	[NR]	Affymetrix [492217] (imputed)	N
1259	chr15	88349644	88349645	rs12904000	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	15q25.3	NR	rs12904000-?	0.2791	9E-6		0.081285	[0.045-0.117] unit increase	Affymetrix, Illumina [4840740] (imputed)	N
1259	chr15	88373966	88373967	rs11073747	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q25.3	NTRK3	rs11073747-A	0.591	2E-8		0.0067	[0.0043-0.0091] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1259	chr15	88385149	88385150	rs8033590	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	15q25.3	intergenic	rs8033590-C	0.43	8E-6	(female)	1.14	[0.65-1.63] unit increase	Illumina [6380737] (imputed)	N
1259	chr15	88423050	88423051	rs11073752	31127053	Tang Y	2019-05-24	Diabetes	A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.	Diabetic peripheral neuropathy in type 2 diabetes	4,384 European ancestry cases, 784 European ancestry controls	791 European ancestry cases, 158 European ancestry controls, 1,345 African American individuals	15q25.3	NTRK3	rs11073752-?	NR	7E-7	(EA)	1.3157895	[1.18-1.47]	Affymetrix, Illumina [6847206] (imputed)	N
1259	chr15	88430933	88430934	rs1369429	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	15q25.3	NR	rs1369429-T	NR	1E-9		6.088	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1259	chr15	88437670	88437671	rs73452628	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.3	NR	rs73452628-G	0.02091	2E-8	(FTH1)	0.1345	NR unit increase	Illumina [1671387] (imputed)	N
1259	chr15	88451764	88451765	rs3784441	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q25.3	NR	rs3784441-?	NR	3E-6		4.66	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1259	chr15	88459567	88459568	rs79804987	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	15q25.3		rs79804987-?	NR	7E-6		0.5249158	[0.3-0.75] unit decrease	Illumina [9901720] (imputed)	N
1260	chr15	88495687	88495688	rs117083606	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	15q25.3		rs117083606-?	NR	7E-6		0.466016	[0.26-0.67] unit decrease	Illumina [9906551] (imputed)	N
1260	chr15	88514161	88514162	rs9944243	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q25.3	NTRK3	rs9944243-T	0.879375	5E-10	(NTRK3, 2658_27_1)	0.22114749	[0.15-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1261	chr15	88614226	88614227	rs116920234	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	15q25.3	NR	rs116920234-T	0.006878	4E-7		0.902	[0.56-1.25] unit increase	Illumina [10677593] (imputed)	N
1261	chr15	88661738	88661739	rs9806762	22388998	Zhang CK	2012-01-19	Am J Hematol	Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation.	Gaucher disease severity	139 Ashkenazi Jewish cases	NA	15q25.3	NTRK3	rs9806762-?	NR	7E-6				Illumina [540902]	N
1261	chr15	88723711	88723712	rs1104918	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	15q25.3	NTRK3	rs1104918-T		6E-6	(Modelling analysis)	1.07	[1.04-1.10]	NR [1252901] (imputed)	N
1262	chr15	88758573	88758574	rs146797905	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q25.3	NR	rs146797905-A	NR	4E-7		1.15	[NR]	Illumina [7158791] (imputed)	N
1262	chr15	88862182	88862183	rs71403935	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	V9D3004 abundance in stool	5,959 Finnish ancestry individuals	NA	15q25.3		rs71403935-T	0.0193483	4E-8		0.20323	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
1263	chr15	88871161	88871162	rs62024303	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	15q25.3	NR	rs62024303-G		4E-6		0.3053	[0.17-0.44] SD units increase	NR [10700000] (imputed)	N
1263	chr15	88871161	88871162	rs62024303	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	15q25.3	NR	rs62024303-?	NR	3E-7	(Latino)	1.2385	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1263	chr15	88943806	88943807	rs8035777	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	15q25.3	NR	rs8035777-A	0.7633	3E-8		0.027145013	[0.018-0.037] unit increase	NR [NR]	N
1263	chr15	88945877	88945878	rs28541419	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	15q25.3	NR	rs28541419-G	0.231	3E-8		0.0078	[0.0051-0.0105] unit decrease	NR [7666894] (imputed)	N
1263	chr15	88969281	88969282	rs7165009	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q25.3	NR	rs7165009-T	0.0331	4E-9	(HINT1)	0.1646	NR unit decrease	Illumina [1671387] (imputed)	N
1264	chr15	89036240	89036241	rs72760087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q25.3	RP11-97O12.7	rs72760087-C	NR	7E-10		0.032849	[0.022-0.043] unit decrease	Affymetrix [323123] (imputed)	N
1264	chr15	89036290	89036291	rs4932397	28662289	Lin YY	2017-06-29	Cancer	Genome-wide association analysis identifies a GLUL haplotype for familial hepatitis B virus-related hepatocellular carcinoma.	Familial hepatitis B virus-related hepatocellular carcinoma	139 East Asian ancestry cases, 139 East Asian ancestry controls	NA	15q25.3	MRPS11	rs4932397-C	0.4964	7E-6		2.17	[1.56-3.13]	Affymetrix [641398]	N
1264	chr15	89038811	89038812	rs7182912	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q25.3	NR	rs7182912-G	0.808596	4E-9		0.020973	[0.013-0.029] unit increase	Affymetrix [16577313] (imputed)	N
1264	chr15	89042466	89042467	rs12915845	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	15q25.3	DET1	rs12915845-C	0.58	3E-12		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1264	chr15	89056039	89056040	rs13835	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	15q26.1	NR	rs13835-A	0.42420800000000003	5E-10		0.0189802	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
1264	chr15	89056039	89056040	rs13835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q26.1		rs13835-?	NR	4E-28				NR [~ 8900000] (imputed)	N
1264	chr15	89056501	89056502	rs17190166	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	15q26.1		rs17190166-C	NR	2E-6		0.00388786	[0.0023-0.0055] years increase	NR [7400000] (imputed)	N
1264	chr15	89056501	89056502	rs17190166	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	15q26.1		rs17190166-C	NR	1E-7		0.00613999	[0.0039-0.0084] years increase	NR [7400000] (imputed)	N
1264	chr15	89056501	89056502	rs17190166	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	15q26.1		rs17190166-C	NR	1E-7		0.00477227	[0.003-0.0065] years decrease	NR [7400000] (imputed)	N
1264	chr15	89056501	89056502	rs17190166	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	15q26.1		rs17190166-C	NR	8E-18		0.028197467	[0.022-0.035] years increase	NR [7400000] (imputed)	N
1264	chr15	89107501	89107502	rs2033887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs2033887-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1264	chr15	89111921	89111922	rs6496499	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q26.1	NR	rs6496499-G	NR	1E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
1264	chr15	89113481	89113482	rs1348005	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	15q26.1	DET1, LINC01586	rs1348005-G	0.324588178265704	1E-31		0.057	[0.047-0.067] SD decrease	Illumina [22400000] (imputed)	N
1264	chr15	89119103	89119104	rs17776563	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	15q26.1	MIR1179	rs17776563-A	0.322	6E-7	(TSH - Males)	0.069	[0.042-0.096] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1264	chr15	89119103	89119104	rs17776563	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	15q26.1	MIR1179	rs17776563-A	0.322	3E-10	(TSH)	0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1264	chr15	89125814	89125815	rs7164861	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Verbal memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	15q26.1	intergenic	rs7164861-T		2E-7		1.3	[NR] unit decrease	Illumina [NR] (imputed)	N
1265	chr15	89143948	89143949	rs72763822	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	15q26.1	LINC01586	rs72763822-?	NR	9E-20		0.658	[0.52-0.8] unit decrease	Affymetrix [11100000] (imputed)	N
1265	chr15	89153743	89153744	rs1470108	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	15q26.1	NR	rs1470108-A	0.34	7E-10		0.24	[0.16-0.32] unit increase	Affymetrix [9231066] (imputed)	N
1265	chr15	89153743	89153744	rs1470108	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	15q26.1	NR	rs1470108-A	0.34	7E-10		0.24	[0.16-0.32] unit increase	Affymetrix [9231066] (imputed)	N
1265	chr15	89154965	89154966	rs7170666	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q26.1	Intergenic	rs7170666-?		4E-6		1.03	[1.02-1.04]	Illumina [7645193] (imputed)	N
1265	chr15	89165030	89165031	rs8024058	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	15q26.1	AEN, MIR7-2, MIR1179, ISG20	rs8024058-A	NR	9E-6	(sleep onset)	0.2095	[0.12-0.3] unit increase	Affymetrix [7141204] (imputed)	N
1265	chr15	89180745	89180746	rs4491485	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum total polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	15q26.1	ISG20	rs4491485-?	NR	7E-6				Illumina [621723]	N
1265	chr15	89180745	89180746	rs4491485	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	15q26.1	ISG20	rs4491485-G	0.248	9E-6		1.133	unit decrease	Illumina [621723]	N
1265	chr15	89182465	89182466	rs62023331	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ISG20	rs62023331-T	NR	2E-8		0.0180007	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1265	chr15	89190085	89190086	rs8041113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q26.1	ISG20	rs8041113-T	0.466268	3E-9		0.013198049	[0.0089-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1265	chr15	89190085	89190086	rs8041113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs8041113-T	0.424929	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
1265	chr15	89190085	89190086	rs8041113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q26.1	NR	rs8041113-T	0.466151	5E-11		0.012783	[0.009-0.0166] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1265	chr15	89190210	89190211	rs12914346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q26.1		rs12914346-A	NR	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1265	chr15	89190210	89190211	rs12914346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q26.1		rs12914346-A	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1265	chr15	89197507	89197508	rs58383894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q26.1		rs58383894-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1265	chr15	89201406	89201407	rs145225118	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	15q26.1	NR	rs145225118-G	0.9735	1E-8		1.5447	[1.01-2.08] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
1265	chr15	89231800	89231801	rs4932408	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	15q26.1	ISG20-ACAN	rs4932408-A	0.013	3E-6		1.85	[1.59-2.11]	Affymetrix, Illumina [8000000] (imputed)	N
1265	chr15	89236385	89236386	rs12441297	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	15q26.1	ISG20	rs12441297-G	19.57	6E-13	(additive)	0.96	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1265	chr15	89238183	89238184	rs6496519	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	15q26.1	ISG20, ACAN, AEN	rs6496519-?	0.836	7E-17		1.2642225	[1.2-1.34]	Illumina [238825]	N
1265	chr15	89245238	89245239	rs4932194	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	15q26.1	ISG20	rs4932194-?	0.69	8E-7		1.22	[1.12-1.3]	Illumina [234939]	N
1265	chr15	89249138	89249139	rs8027587	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	ISG20	rs8027587-G	0.48	5E-6	(SBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
1265	chr15	89253267	89253268	rs4932196	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	15q26.1	ISG20	rs4932196-T	0.803	3E-6	(EA)	0.0841	[0.049-0.120] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1265	chr15	89253267	89253268	rs4932196	31564434	Wells HRR	2019-09-26	Am J Hum Genet	GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank.	Adult hearing difficulty	87,056 British ancestry cases, 163,333 British ancestry controls	30,765 European ancestry individuals	15q26.1	ISG20	rs4932196-T	0.809	5E-7		0.0085	[0.0052-0.0118] unit increase	Affymetrix [9740198] (imputed)	N
1265	chr15	89253267	89253268	rs4932196	31564434	Wells HRR	2019-09-26	Am J Hum Genet	GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank.	Adult hearing aid use	13,178 British ancestry cases, 240,740 British ancestry controls	35,004 European ancestry individuals	15q26.1	ISG20	rs4932196-T	0.809	6E-7		0.0039	[0.0023-0.0055] unit increase	Affymetrix [9740198] (imputed)	N
1265	chr15	89253267	89253268	rs4932196	27764096	Hoffmann TJ	2016-10-20	PLoS Genet	A Large Genome-Wide Association Study of Age-Related Hearing Impairment Using Electronic Health Records.	Age-related hearing impairment	6,527 European ancestry cases, 45,882 European ancestry controls	481 Latino cases, 398 East Asian ancestry cases, 146 African American cases, 5,215 Latino controls, 5,040 East Asian ancestry controls, 2,133 African American controls	15q26.1	ISG20, ACAN	rs4932196-T	0.810	4E-11	(EA)	1.185	[NR]	Affymetrix [9469183] (imputed)	N
1265	chr15	89253267	89253268	rs4932196	27764096	Hoffmann TJ	2016-10-20	PLoS Genet	A Large Genome-Wide Association Study of Age-Related Hearing Impairment Using Electronic Health Records.	Age-related hearing impairment	6,527 European ancestry cases, 45,882 European ancestry controls	481 Latino cases, 398 East Asian ancestry cases, 146 African American cases, 5,215 Latino controls, 5,040 East Asian ancestry controls, 2,133 African American controls	15q26.1	ISG20, ACAN	rs4932196-T	0.810	3E-13		1.186	[NR]	Affymetrix [9469183] (imputed)	N
1265	chr15	89257733	89257734	rs72765638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ISG20	rs72765638-C	NR	6E-11		0.0307083	[0.021-0.04] unit decrease	Affymetrix [323123] (imputed)	N
1265	chr15	89257733	89257734	rs72765638	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	intergenic	rs72765638-C	0.122	5E-17		0.0242	[0.019-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1266	chr15	89275591	89275592	rs146176108	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	15q26.1	NR	rs146176108-G		2E-6		0.4622	[0.27-0.66] SD units decrease	NR [10700000] (imputed)	N
1266	chr15	89309891	89309892	rs12591979	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.1	RP11-343B18.2	rs12591979-C	0.1618	9E-6		0.0416	[0.023-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1266	chr15	89349707	89349708	rs4932200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs4932200-G	NR	3E-13		0.0224747	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
1266	chr15	89349707	89349708	rs4932200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs4932200-?	NR	7E-98				NR [~ 8900000] (imputed)	N
1266	chr15	89350966	89350967	rs7176941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs7176941-G	NR	4E-11		0.0187325	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1266	chr15	89354885	89354886	rs938614	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.1	ACAN	rs938614-A	0.4746	7E-7		0.0317	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1266	chr15	89356831	89356832	rs11633371	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	ACAN	rs11633371-T	0.4764	1E-27		0.0208	[0.017-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1266	chr15	89356831	89356832	rs11633371	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q26.1	NR	rs11633371-?	NR	1E-7		0.03222534	[0.02-0.044] unit increase	Illumina [34656550] (imputed)	N
1266	chr15	89359688	89359689	rs8041863	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q26.1	NR	rs8041863-?	NR	2E-7		0.03146586	[0.02-0.043] unit increase	Illumina [34656550] (imputed)	N
1266	chr15	89359688	89359689	rs8041863	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	15q26.1	ACAN	rs8041863-A	0.47	8E-8		0.04	[0.01-0.06] s.d. increase (males)	Affymetrix [402951]	N
1266	chr15	89361141	89361142	rs72765671	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.1	ACAN	rs72765671-?	NR	3E-8		0.034586366	[0.022-0.047] unit decrease	Illumina [27896057] (imputed)	N
1266	chr15	89361668	89361669	rs8026676	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs8026676-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1266	chr15	89370465	89370466	rs56071466	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.1	ACAN	rs56071466-?	NR	8E-9		0.018653687	[0.012-0.025] unit decrease	Illumina [27896057] (imputed)	N
1266	chr15	89379347	89379348	rs17200030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs17200030-T	NR	3E-9		0.0488373	[0.033-0.065] unit decrease	Affymetrix [321016] (imputed)	N
1266	chr15	89382533	89382534	rs11855963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs11855963-A	NR	2E-11		0.0204287	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1266	chr15	89383005	89383006	rs883325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs883325-T	NR	6E-9		0.0166696	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1266	chr15	89383005	89383006	rs883325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs883325-T	NR	6E-10		0.0190493	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1266	chr15	89383005	89383006	rs883325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs883325-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1266	chr15	89383763	89383764	rs16942323	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	15q26.1	ACAN	rs16942323-C	0.0344	1E-11		0.012843136	[0.0091-0.0165] m decrease	Illumina [24111857] (imputed)	N
1266	chr15	89383853	89383854	rs16942324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs16942324-A	NR	7E-11		0.0576682	[0.04-0.075] unit decrease	Affymetrix [321114] (imputed)	N
1266	chr15	89384350	89384351	rs149009235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs149009235-G	NR	4E-14		0.0515875	[0.038-0.065] unit decrease	Affymetrix [321016] (imputed)	N
1266	chr15	89385493	89385494	rs12908753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs12908753-A	NR	5E-13		0.0228775	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1266	chr15	89386223	89386224	rs56238630	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	ACAN	rs56238630-T	0.9708	7E-39		0.0736	[0.063-0.085] unit increase	Affymetrix [18391927] (imputed)	N
1266	chr15	89386223	89386224	rs56238630	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.1	ACAN	rs56238630-T	0.9654	2E-12		0.1384	[0.1-0.177] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs34949187-A	NR	6E-10		0.0223514	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs34949187-A	NR	1E-10		0.0253996	[0.018-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	ACAN	rs34949187-A	0.1864	5E-40		0.0308	[0.026-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	15q26.1	ACAN	rs34949187-A	0.186	2E-16		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	15q26.1	ACAN	rs34949187-A	0.186	1E-26		0.04	[0.032-0.048] unit decrease	Affymetrix [18391927] (imputed)	N
1266	chr15	89386651	89386652	rs34949187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q26.1		rs34949187-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1266	chr15	89387845	89387846	rs146576224	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q26.1	ACAN	rs146576224-C	0.882	2E-13	(AA)	0.078	[0.056-0.1] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1266	chr15	89387845	89387846	rs146576224	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	15q26.1	ACAN	rs146576224-C	0.882	6E-8	(AA)	0.07	[0.045-0.095] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1266	chr15	89387845	89387846	rs146576224	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	15q26.1	ACAN	rs146576224-C	0.882	1E-8	(AA)	0.098	[0.065-0.131] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1266	chr15	89387903	89387904	rs11630187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q26.1		rs11630187-G	0.372471	4E-16		0.0170968	[0.013-0.021] unit decrease	Illumina [13479295] (imputed)	N
1266	chr15	89387903	89387904	rs11630187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs11630187-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1266	chr15	89387903	89387904	rs11630187	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.1	ACAN	rs11630187-?	NR	3E-17		0.02515164	[0.019-0.031] unit decrease	Illumina [27896057] (imputed)	N
1266	chr15	89388904	89388905	rs16942341	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q26.1	NR	rs16942341-?	NR	2E-13		0.0819349	[0.06-0.104] unit decrease	Illumina [34656550] (imputed)	N
1266	chr15	89388904	89388905	rs16942341	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q26.1	NR	rs16942341-?	NR	7E-14		0.48448	[0.36-0.61] unit decrease	Affymetrix [7794483] (imputed)	N
1266	chr15	89388904	89388905	rs16942341	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q26.1	NR	rs16942341-?	NR	1E-10	(male)	0.65849	[0.46-0.86] unit decrease	Affymetrix [7794483] (imputed)	N
1266	chr15	89388904	89388905	rs16942341	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.1	ACAN	rs16942341-T	0.0284	4E-8	(EA)	0.0664	[0.043-0.09] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1266	chr15	89388904	89388905	rs16942341	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.1	ACAN	rs16942341-T	0.03	4E-27		0.13	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1267	chr15	89391159	89391160	rs2272023	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs2272023-C	NR	8E-16		0.0267196	[0.02-0.033] unit increase	Affymetrix [321016] (imputed)	N
1267	chr15	89391701	89391702	rs142050326	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs142050326-T	NR	2E-10		0.0729008	[0.05-0.095] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89391701	89391702	rs142050326	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs142050326-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1267	chr15	89394307	89394308	rs151039950	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs151039950-T	NR	7E-16		0.0982427	[0.074-0.122] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89394599	89394600	rs1516795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q26.1		rs1516795-C	NR	4E-14		0.046	[0.034-0.058] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1267	chr15	89395625	89395626	rs2280470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.1	ACAN	rs2280470-A	0.3261	2E-10		0.0461	[0.032-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1267	chr15	89395625	89395626	rs2280470	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q26.1	ACAN	rs2280470-A	0.333	3E-44		0.044	[0.038-0.050] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1267	chr15	89395625	89395626	rs2280470	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	15q26.1	ACAN	rs2280470-A	0.36	6E-9		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
1267	chr15	89395625	89395626	rs2280470	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q26.1	ACAN	rs2280470-A	0.33	1E-15		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1267	chr15	89395625	89395626	rs2280470	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.1	ACAN	rs2280470-?	NR	1E-14	(Conditioned on rs16942341)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1267	chr15	89395992	89395993	rs11073816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs11073816-C	NR	3E-18		0.0258133	[0.02-0.032] unit increase	Affymetrix [321016] (imputed)	N
1267	chr15	89396531	89396532	rs11635309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs11635309-A	NR	2E-13		0.0276817	[0.02-0.035] unit increase	Affymetrix [323123] (imputed)	N
1267	chr15	89396582	89396583	rs28547091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs28547091-A	NR	2E-24		0.0850693	[0.069-0.101] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.1		rs28584580-G	NR	2E-124		0.1153	[0.11-0.12] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs28584580-G	NR	3E-12		0.0632784	[0.046-0.081] unit decrease	Affymetrix [323123] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	3E-14		0.05781	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	2E-34	(females)	0.1183	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	4E-23	(females)	0.09573	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	2E-8		0.04395	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	8E-7	(males)	0.01788	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	4E-12	(females)	0.06461	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN, HAPLN3	rs28584580-G	0.0363278	2E-9		0.04313	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89397826	89397827	rs28584580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs28584580-?	NR	3E-196				NR [~ 8900000] (imputed)	N
1267	chr15	89398104	89398105	rs2351491	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q26.1	ACAN	rs2351491-T	0.25	2E-9		0.057	[0.037-0.077] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1267	chr15	89399166	89399167	rs530742363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs530742363-C	NR	3E-13		0.0223116	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1267	chr15	89399166	89399167	rs530742363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs530742363-C	NR	1E-17		0.0281411	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
1267	chr15	89400042	89400043	rs28559926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs28559926-C	NR	2E-12		0.0536046	[0.039-0.069] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89400679	89400680	rs28407189	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.1	ACAN	rs28407189-G	NR	2E-11		0.0613058	[0.043-0.079] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89403403	89403404	rs3784757	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs3784757-A	NR	5E-15		0.0612062	[0.046-0.077] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89404313	89404314	rs143127748	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFGE8	5,368 Icelandic ancestry individuals	NA	15q26.1		rs143127748-T	0.01105	1E-17		0.756936	[0.58-0.93] unit increase	Illumina [7506463] (imputed)	N
1267	chr15	89405051	89405052	rs16942383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.1	ACAN	rs16942383-A	NR	9E-10		0.0462836	[0.031-0.061] unit decrease	Affymetrix [323123] (imputed)	N
1267	chr15	89405538	89405539	rs59081368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs59081368-C	NR	2E-10		0.0448179	[0.031-0.059] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89405538	89405539	rs59081368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.1	ACAN	rs59081368-C	NR	1E-14		0.058649	[0.044-0.074] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89405538	89405539	rs59081368	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs59081368-?	NR	4E-24				Affymetrix [~ 8270000] (imputed)	N
1267	chr15	89411368	89411369	rs28458331	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	15q26.1		rs28458331-G	NR	5E-7		2.7464	[1.7-3.79] unit increase	Illumina [NR] (imputed)	N
1267	chr15	89411804	89411805	rs9972588	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q26.1	NR	rs9972588-?	NR	6E-6	(Chao1 richness estimate)	0.849669	[0.48-1.22] unit increase	Illumina [5293637] (imputed)	N
1267	chr15	89412278	89412279	rs8042988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.1	ACAN	rs8042988-G	NR	1E-10		0.0212151	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89412278	89412279	rs8042988	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q26.1	NR	rs8042988-?	NR	6E-8		0.03302526	[0.021-0.045] unit decrease	Illumina [34656550] (imputed)	N
1267	chr15	89412278	89412279	rs8042988	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Height	2,754 Bangladeshi ancestry females, 2,590 Bangladeshi ancestry males	NA	15q26.1	ACAN	rs8042988-A	0.621	4E-7		0.006	[0.0040-0.0080] m increase	Illumina [1208102] (imputed)	N
1267	chr15	89413242	89413243	rs35148461	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.1	ACAN	rs35148461-?	NR	1E-11		0.022027003	[0.016-0.028] unit decrease	Illumina [27896057] (imputed)	N
1267	chr15	89413242	89413243	rs35148461	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.1	ACAN	rs35148461-T	0.7119	2E-8		0.0422	[0.027-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs1879529-?	NR	6E-28				Affymetrix [~ 8270000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs1879529-G	0.7214	2E-9	(EA)	0.0256	[0.017-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs1879529-G	0.7214	1E-7	(EA, women)	0.0295	[0.019-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q26.1	ACAN	rs1879529-G	0.7224999999999999	1E-6	(EA,women)	0.0302	[0.018-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q26.1	ACAN	rs1879529-G	0.7214	1E-9	(EA)	0.0294	[0.02-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs1879529-?	0.7214	6E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs1879529-?	0.7214	4E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	7E-6		0.0199	[0.011-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	5E-6	(women)	0.0254	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	8E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	1E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	9E-7	(women)	0.0246	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q26.1	ACAN	rs1879529-T	0.279	1E-7		0.0206	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.1	ACAN	rs1879529-T	0.2838	8E-6	(EA,women)	0.0222	[0.012-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1267	chr15	89414294	89414295	rs1879529	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.1	ACAN	rs1879529-T	0.2838	3E-10	(EA)	0.0239	[0.016-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	ACAN	rs3817428-G	NR	2E-16		0.0265397	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs3817428-G	NR	2E-16		0.0261933	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	15q26.1		rs3817428-C	0.73	5E-11				NR [NR] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	15q26.1		rs3817428-C	0.73	1E-18		0.015	% increase	NR [NR] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q26.1	ACAN	rs3817428-C	0.735103	1E-11		0.0107532	[0.0076-0.0139] unit decrease	Affymetrix [12370749]	N
1267	chr15	89415246	89415247	rs3817428	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	15q26.1	NR	rs3817428-G	0.265822	2E-10		0.0715922	[0.05-0.093] unit increase	Affymetrix [21375087] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q26.1	NR	rs3817428-G	0.265627	3E-26		0.0803263	[0.065-0.095] unit increase	Affymetrix [17914406] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	1E-49	(females)	0.051	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	1E-38		0.03352	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	3E-38	(females)	0.04482	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	2E-25		0.0264	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	2E-7	(males)	0.02504	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	2E-17		0.02376	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.1	ACAN	rs3817428-G	0.255701	1E-10	(females)	0.02199	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs3817428-C	0.7327	2E-8		0.0266	[0.017-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	15q26.1	ACAN	rs3817428-C	0.7327	2E-8		0.0298	[0.019-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	15q26.1	ACAN	rs3817428-?	0.7327	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1267	chr15	89415246	89415247	rs3817428	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q26.1	ACAN	rs3817428-C	0.89	9E-11		0.046	[0.026-0.066] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1267	chr15	89418089	89418090	rs76635155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	ACAN	rs76635155-T	NR	2E-11		0.0544268	[0.039-0.07] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89420973	89420974	rs17201864	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	15q26.1	NR	rs17201864-T	NR	2E-8	(Cox proportional hazards regression model)	19.06	[6.86-52.98]	Illumina [810622]	N
1267	chr15	89424869	89424870	rs141308595	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	15q26.1		rs141308595-?	NR	7E-46		0.306777	[0.26-0.35] unit decrease	NR [9800000] (imputed)	N
1267	chr15	89424869	89424870	rs141308595	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	HAPLN3	rs141308595-T	0.0015	2E-12		0.1742	[0.13-0.22] unit decrease	Affymetrix [18391927] (imputed)	N
1267	chr15	89424869	89424870	rs141308595	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	15q26.1	HAPLN3	rs141308595-T	0.002	4E-7		0.17	[0.1-0.24] unit decrease	Affymetrix [18391927] (imputed)	N
1267	chr15	89424869	89424870	rs141308595	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	15q26.1	HAPLN3	rs141308595-T	0.002	9E-7		0.18	[0.11-0.25] unit decrease	Affymetrix [18391927] (imputed)	N
1267	chr15	89426934	89426935	rs17791430	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q26.1	HAPLN3	rs17791430-T	0.754054695	6E-6		1.081127	[1.05-1.12]	Illumina [10439017] (imputed)	N
1267	chr15	89432447	89432448	rs74552179	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.1	HAPLN3	rs74552179-A	NR	6E-9		0.0739826	[0.049-0.099] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr15	89436294	89436295	rs8039131	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Calcium levels	587 Han Chinese ancestry individuals	NA	15q26.1		rs8039131-?	NR	4E-6		0.218	[-0.64048-1.07648] unit decrease	Affymetrix [6423076] (imputed)	N
1267	chr15	89436670	89436671	rs8029559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	HAPLN3	rs8029559-C	NR	1E-9		0.0188789	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89439214	89439215	rs11632935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	HAPLN3	rs11632935-T	NR	3E-13		0.0208216	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89445650	89445651	rs3743392	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	15q26.1	MFGE8, HAPLN3	rs3743392-G	0.3214644	5E-12	(EA, Lactadherin)	0.3145	[0.23-0.4] unit decrease	Affymetrix [509946]	N
1267	chr15	89445783	89445784	rs1879530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	MFGE8	rs1879530-A	NR	2E-10		0.0227518	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89448200	89448201	rs3825992	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	15q26.1	MFGE8	rs3825992-T	0.9645	5E-6		0.4087	[0.23-0.58] unit increase	NR [NR] (imputed)	N
1267	chr15	89449626	89449627	rs2271715	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFGE8	5,368 Icelandic ancestry individuals	NA	15q26.1		rs2271715-G	0.3556	2E-10		0.127383	[0.088-0.166] unit increase	Illumina [7506463] (imputed)	N
1267	chr15	89450835	89450836	rs12907520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	MFGE8	rs12907520-G	NR	8E-9		0.0167886	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1267	chr15	89455767	89455768	rs34239095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q26.1		rs34239095-G	NR	9E-16		0.0189	[0.014-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1267	chr15	89455767	89455768	rs34239095	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q26.1	MFGE8	rs34239095-C	0.719312	7E-20		0.0022989	[0.0018-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
1267	chr15	89455767	89455768	rs34239095	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q26.1	MFGE8	rs34239095-C	0.72	7E-16		8.07	z-score increase	Affymetrix [4311822] (imputed)	N
1267	chr15	89456947	89456948	rs12911703	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFGE8	5,368 Icelandic ancestry individuals	NA	15q26.1		rs12911703-A	0.2901	1E-39		0.274865	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
1267	chr15	89467453	89467454	rs1961839	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q26.1	MFGE8	rs1961839-A	0.397	3E-19	(Lactadherin, MFGE8.4455.89.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1267	chr15	89479042	89479043	rs12898558	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q26.1	MFGE8	rs12898558-A	0.69578125	4E-26	(MFGE8, 4455_89_2)	0.28244156	[0.23-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1267	chr15	89486489	89486490	rs68076149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.1	RP11-63A23.2	rs68076149-G	NR	3E-8		0.0163412	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr15	89491335	89491336	rs143773583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs143773583-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1267	chr15	89497099	89497100	rs12440803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs12440803-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1267	chr15	89515162	89515163	rs34783982	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	15q26.1	MFGE8, ABHD2	rs34783982-G	0.705069358	9E-6		1.0965776	[1.05-1.14]	Illumina [10439017] (imputed)	N
1267	chr15	89521165	89521166	rs56405824	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		15q26.1	intergenic	rs56405824-A	0.022	8E-6		1.342	[0.76-1.92] unit increase	Illumina [640625] (imputed)	N
1268	chr15	89558992	89558993	rs141128743	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q26.1		rs141128743-C	0.00689	3E-8		0.9412	[0.61-1.27] unit increase	Illumina [18030777] (imputed)	N
1268	chr15	89562813	89562814	rs28687065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs28687065-G	NR	1E-9		0.0948	[0.064-0.125] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
1268	chr15	89562813	89562814	rs28687065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs28687065-G	0.53226112	6E-14		0.101754695	[0.075-0.128] unit decrease	Illumina [13427135] (imputed)	N
1268	chr15	89564957	89564958	rs734780	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	15q26.1	MFGE8, ABHD2	rs734780-T	0.83	4E-10		1.07	[1.04-1.10]	Illumina [5167567] (imputed)	N
1268	chr15	89564957	89564958	rs734780	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	MFGE8, ABHD2	rs734780-T		2E-8		0.245	unit increase	Affymetrix [at least 2696785] (imputed)	N
1268	chr15	89565256	89565257	rs1807214	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q26.1	ABHD2	rs1807214-A	0.888744	6E-6		1.06	[1.03-1.09]	NR [8126035] (imputed)	N
1268	chr15	89565256	89565257	rs1807214	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q26.1	intergenic	rs1807214-A	0.8891	5E-11		0.0639	[0.045-0.083] unit increase	Affymetrix [at least 7947838] (imputed)	N
1268	chr15	89565485	89565486	rs8037001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q26.1		rs8037001-T	NR	3E-17		0.0858	[0.066-0.106] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1268	chr15	89568105	89568105	rs10683082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs10683082-AAAG	NR	1E-15		0.0875	[0.066-0.109] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1268	chr15	89569467	89569468	rs4932463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q26.1		rs4932463-G	0.547746242	9E-12		0.09116657	[0.065-0.117] unit decrease	Illumina [13426705] (imputed)	N
1268	chr15	89572875	89572876	rs745386	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q26.1	MFGE8, ABHD2	rs745386-?	NR	2E-26		0.0742465	[0.061-0.088] unit decrease	Illumina [4804024] (imputed)	N
1268	chr15	89574217	89574218	rs8042271	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q26.1	intergenic	rs8042271-A	0.08	5E-8		0.0746	[0.048-0.101] unit decrease	NR [8041861] (imputed)	N
1268	chr15	89574217	89574218	rs8042271	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q26.1	MFGE8, ABHD2	rs8042271-G	0.9	4E-8	(additive model)	1.1	[1.06-1.14]	Affymetrix, Illumina [8600000] (imputed)	N
1268	chr15	89574417	89574418	rs2083458	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	15q26.1	MFGE8, ABHD2	rs2083458-?	NR	9E-18		0.0878182	[0.068-0.108] unit decrease	Illumina [19707525] (imputed)	N
1268	chr15	89574483	89574484	rs2083460	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	15q26.1	MFGE8, ABHD2	rs2083460-T	0.885	1E-7		1.07	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1268	chr15	89577219	89577220	rs8029102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	15q26.1		rs8029102-A	0.538645924	6E-10		0.079463616	[0.054-0.105] unit decrease	Illumina [13429980] (imputed)	N
1268	chr15	89578346	89578347	rs8035119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	15q26.1		rs8035119-C	NR	1E-10		0.0786	[0.055-0.102] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1268	chr15	89578861	89578862	rs7182131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs7182131-T	0.543389772	1E-15		0.101882726	[0.077-0.127] unit decrease	Illumina [13427711] (imputed)	N
1268	chr15	89578861	89578862	rs7182131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs7182131-T	NR	1E-16		0.0918	[0.07-0.113] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1268	chr15	89579920	89579921	rs7164299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q26.1		rs7164299-C	NR	9E-11		0.0177	[0.012-0.023] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1268	chr15	89611556	89611557	rs11858077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q26.1	RP11-326A19.4	rs11858077-G	0.288676	6E-24		0.025140023	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1268	chr15	89612289	89612290	rs11858280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs11858280-A	0.703558	2E-32				Affymetrix, Illumina [17210439] (imputed)	N
1268	chr15	89612289	89612290	rs11858280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q26.1	NR	rs11858280-A	0.711295	8E-35		0.02616	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1268	chr15	89615274	89615275	rs7162943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	15q26.1	RP11-326A19.4	rs7162943-T	0.2621	2E-10		0.02640763	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1268	chr15	89617080	89617081	rs420017	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	ABHD2	rs420017-A	0.336	8E-6	(BMR )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1268	chr15	89617080	89617081	rs420017	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	15q26.1	intergenic	rs420017-T	0.21	7E-6		0.043	[0.023-0.063] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1268	chr15	89617229	89617230	rs405103	30092369	Mainali B	2018-08-06	Papillomavirus Res	Variants in Immune-related Genes and Genital HPV 16 Persistence in Men.	Infection persistence (>18 months) in genital human papillomavirus 16 infection	21 European ancestry male cases, 15 Brazilian ancestry male cases,  4 African-American male cases, 62 European ancestry male controls, 69 Brazilian ancestry male controls, 20 African-American male controls	NA	15q26.1	LOC102724566	rs405103-T	NR	6E-6		2.221	[NR] unit increase	Affymetrix [605885]	N
1268	chr15	89634413	89634414	rs293377	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	15q26.1	ABHD2	rs293377-?	NR	5E-8		0.7	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
1269	chr15	89723857	89723858	rs4932480	28813576	Persad PJ	2017-08-01	Invest Ophthalmol Vis Sci	Joint Analysis of Nuclear and Mitochondrial Variants in Age-Related Macular Degeneration Identifies Novel Loci TRPM1 and ABHD2/RLBP1.	Advanced age-related macular degeneration	Up to 16,144 European ancestry cases, up to 17,832 European ancestry controls	NA	15q26.1	ABHD2, RLBP1	rs4932480-T	0.49	1E-7				Illumina [3866946] (imputed)	N
1269	chr15	89724599	89724600	rs143567792	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	15q26.1	ABHD2	rs143567792-G	NR	6E-7		0.123746	[0.075-0.172] unit decrease	Illumina [13519193] (imputed)	N
1269	chr15	89724599	89724600	rs143567792	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	15q26.1	ABHD2	rs143567792-G	NR	2E-6		0.107569	[0.063-0.152] unit decrease	Illumina [13520550] (imputed)	N
1269	chr15	89780971	89780972	rs12903987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.1		rs12903987-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1269	chr15	89781854	89781855	rs9788714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	15q26.1		rs9788714-?	NR	6E-19				NR [~ 8900000] (imputed)	N
1270	chr15	89804042	89804043	rs17803620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	FANCI	rs17803620-T	0.378492	5E-17		0.01913619	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr15	89809786	89809787	rs188263039	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	15q26.1	FANCI	rs188263039-T	0.988	6E-26	(YKL-40)	76.738	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1270	chr15	89811542	89811543	rs7496308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs7496308-G	0.607329	6E-19				Affymetrix, Illumina [22063850] (imputed)	N
1270	chr15	89812337	89812338	rs35289216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q26.1	NR	rs35289216-C	0.618436	2E-19		0.017408	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1270	chr15	89815927	89815928	rs117809422	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	15q26.1	FANCI	rs117809422-A	0.015	7E-26	(YKL-40)	76.377	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1270	chr15	89845858	89845859	rs188631178	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	15q26.1	FANCI	rs188631178-T	0.986	1E-19	(YKL-40)	67.032	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1270	chr15	89851579	89851580	rs2238300	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q26.1	FANCI	rs2238300-A	0.396	2E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1270	chr15	89859993	89859994	rs3087374	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	15q26.1	NR	rs3087374-A	0.08549	1E-8		0.0269599	[0.018-0.036] unit increase	Affymetrix [3505788] (imputed)	N
1270	chr15	89861825	89861826	rs2307441	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 24 weeks)	98 European ancestry cases and controls	NA	15q26.1	POLG	rs2307441-G	0.22	3E-6	(HAM-A)	14.38		Illumina [266820] (imputed)	N
1270	chr15	89863927	89863928	rs2307449	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	15q26.1	POLG	rs2307449-G	0.405	4E-13		0.184	[0.14-0.23] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
1270	chr15	89865691	89865692	rs3176205	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q26.1	NR	rs3176205-T	NR	1E-7	(LME model)	0.4721	[0.3-0.65] unit decrease	NR [NR] (imputed)	N
1270	chr15	89869665	89869666	rs2074885	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	15q26.1	NR	rs2074885-?	NR	1E-6		0.8028575	[0.73-0.88]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1270	chr15	89879125	89879126	rs1054875	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	15q26.1	POLG, FANCI	rs1054875-T	0.4	2E-19		0.19	[0.15-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1270	chr15	89883519	89883520	rs1006660	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q26.1	NR	rs1006660-C	NR	2E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
1270	chr15	89883519	89883520	rs1006660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs1006660-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1270	chr15	89899155	89899156	rs7495737	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q26.1		rs7495737-C	0.604	5E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1270	chr15	89899155	89899156	rs7495737	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs7495737-?		4E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1270	chr15	89899623	89899624	rs12595305	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q26.1	NR	rs12595305-T	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1270	chr15	89900886	89900887	rs758129	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q26.1	NR	rs758129-?	NR	8E-10		1.0597149	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1270	chr15	89900886	89900887	rs758129	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q26.1	MIR9-3	rs758129-G	NR	6E-6	(EA)	1.0526316	[1.03-1.07]	Illumina [6627481] (imputed)	N
1270	chr15	89900886	89900887	rs758129	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q26.1	MIR9-3	rs758129-G	NR	3E-7		1.0537407	[1.03-1.07]	Illumina [6627481] (imputed)	N
1270	chr15	89900886	89900887	rs758129	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	15q26.1	MIR9-3, POLG, RLBP1	rs758129-G	NR	3E-8		1.0582011	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1270	chr15	89902031	89902032	rs4932217	18193045	Sanna S	2008-01-13	Nat Genet	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	15q26.1	POLG	rs4932217-A	0.58	8E-7		0.66	[NR] cm increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1270	chr15	89905151	89905152	rs961288	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	MIR9-3HG	rs961288-C	0.4132	1E-12		0.0138	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1270	chr15	89912497	89912498	rs186081057	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Coffee type: Ground coffee (include espresso, filter etc) (UKB data field 1508_3)	81,903 European ancestry cases, 275,522 European ancestry controls	NA	15q26.1		rs186081057-T	0.0033	4E-9		0.29	[0.19-0.39] unit increase	NR [11842647] (imputed)	N
1270	chr15	89913631	89913632	rs176644	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.1	NR	rs176644-T	0.4036	9E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1270	chr15	89913631	89913632	rs176644	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q26.1	POLG	rs176644-T	0.4075	3E-9		0.012165012	[0.0082-0.0162] unit decrease	Affymetrix [11514654] (imputed)	N
1271	chr15	89919944	89919945	rs976560	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q26.1	NA	rs976560-C		3E-9		0.0116901	[0.0078-0.0155] unit increase	Illumina [13288253] (imputed)	N
1271	chr15	89919944	89919945	rs976560	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs976560-?		5E-11	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89919944	89919945	rs976560	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs976560-?		9E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89921968	89921969	rs176647	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.1	NA	rs176647-A	0.395	1E-9	(Female)	1.048	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1271	chr15	89928188	89928189	rs150353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q26.1		rs150353-G	NR	6E-10		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1271	chr15	89928188	89928189	rs150353	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	15q26.1	LOC254559	rs150353-G	0.448	3E-8		0.0205	[0.013-0.028] unit decrease	Illumina [~ 250000] (imputed)	N
1271	chr15	89931147	89931148	rs150294	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	15q26.1	NR	rs150294-A	0.6004	4E-9		1.0308216	NR	NR [8968716] (imputed)	N
1271	chr15	89931717	89931717	rs76199668	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q26.1	MIR9-3HG	rs76199668-A	0.9659	6E-6		0.1609	[0.092-0.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1271	chr15	89931717	89931717	rs76199668	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	15q26.1	MIR9-3HG	rs76199668-A	0.9659	5E-6		0.154	[0.088-0.22] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1271	chr15	89943600	89943601	rs182317	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q26.1		rs182317-T	0.34	2E-11		6.7	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr15	89943600	89943601	rs182317	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.1	NR	rs182317-T	0.366	1E-10				NR [9056863] (imputed)	N
1271	chr15	89943600	89943601	rs182317	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	15q26.1	NR	rs182317-T	0.355	1E-9		0.01558777	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1271	chr15	89943600	89943601	rs182317	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	15q26.1	NR	rs182317-T	0.355	4E-10		0.0144895	[0.01-0.019] unit decrease	NR [9732723] (imputed)	N
1271	chr15	89944189	89944190	rs150300	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs150300-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89946398	89946399	rs72746704	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q26.1	Intergenic	rs72746704-C	0.1013	2E-9	(MTAG)	0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr15	89946398	89946399	rs72746704	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q26.1	Intergenic	rs72746704-G	0.8987	5E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1271	chr15	89946788	89946789	rs150302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs150302-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89946788	89946789	rs150302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs150302-?		5E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89947041	89947042	rs208829	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs208829-?		2E-13	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89947041	89947042	rs208829	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs208829-?		2E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89949209	89949210	rs150304	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs150304-?		5E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89949209	89949210	rs150304	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs150304-?		8E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89950992	89951010	rs143329057	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	15q26.1	NR	rs143329057-?		1E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89950992	89951010	rs143329057	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	15q26.1	NR	rs143329057-?		2E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1271	chr15	89960285	89960286	rs62020775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.1	NR	rs62020775-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1271	chr15	89960285	89960286	rs62020775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.1		rs62020775-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1271	chr15	89986582	89986583	rs1000471	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q26.1	RHCG	rs1000471-C	0.783832	4E-8		0.00950759	[0.0061-0.0129] unit decrease	Affymetrix [12370749]	N
1271	chr15	90014944	90014945	rs2072693	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	15q26.1	RHCG	rs2072693-T	0.48	5E-8		0.014	[0.0089-0.0191] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1271	chr15	90014944	90014945	rs2072693	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	15q26.1	RHCG	rs2072693-T	0.48	8E-7		0.027	[0.016-0.038] unit increase	Affymetrix [at least 8900000] (imputed)	N
1271	chr15	90022797	90022798	rs12902254	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RHCG	rs12902254-?	NR	4E-11	(male)	3.11763	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1272	chr15	90057757	90057758	rs62023070	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00928	rs62023070-?	NR	3E-10	(female)	0.610731	[NR] unit increase	Affymetrix [NR] (imputed)	N
1272	chr15	90081904	90081905	rs28792763	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	15q26.1		rs28792763-A	0.5381791	4E-6		0.94		Affymetrix [15650645] (imputed)	N
1272	chr15	90089275	90089276	rs8038108	24825563	McDonald ML	2014-05-13	Am J Respir Cell Mol Biol	Common genetic variants associated with resting oxygenation in chronic obstructive pulmonary disease.	Resting oxygen saturation in chronic osbtructive pulmonary disease (pulse oxymetry)	820 African American cases	4,568 European ancestry cases	15q26.1	LINC00928, TICRR	rs8038108-C	0.048	5E-9	(AA)	0.009	[0.006-0.013] unit decrease	Illumina [6160662] (imputed)	N
1272	chr15	90091512	90091513	rs1596062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	15q26.1		rs1596062-A	NR	3E-9		0.0407	[0.027-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1272	chr15	90098753	90098754	rs11629542	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	15q26.1	NR	rs11629542-G	NR	3E-6		1.08		Illumina [up to 10291845] (imputed)	N
1272	chr15	90128833	90128834	rs11639246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q26.1		rs11639246-A	NR	3E-9		0.0305	[0.021-0.04] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1272	chr15	90135171	90135172	rs35892197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q26.1	RP11-429B14.1	rs35892197-T	0.519921	3E-11		0.0131923	[0.0091-0.0172] unit increase	Affymetrix [93095623] (imputed)	N
1272	chr15	90135596	90135597	rs62023132	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q26.1		rs62023132-C	0.05	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
1272	chr15	90136572	90136573	rs4362367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q26.1	TICRR	rs4362367-A	0.522242	6E-12		0.015261849	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1272	chr15	90136572	90136573	rs4362367	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	15q26.1	NR	rs4362367-A	0.521807	3E-11		0.013335	[0.0094-0.0173] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1272	chr15	90137324	90137325	rs8032553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q26.1		rs8032553-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1272	chr15	90139261	90139262	rs4556765	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	15q26.1		rs4556765-?	NR	6E-9				NR [9705931] (imputed)	N
1272	chr15	90147586	90147587	rs2350479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs2350479-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1272	chr15	90168107	90168108	rs894157	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	C15orf42	rs894157-G	0.273	9E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1273	chr15	90210353	90210364	rs750619494	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Waist-to-hip ratio adjusted for BMI	458,349 European ancestry individuals	NA	15q26.1		rs750619494-?	NR	3E-11		0.408169	[0.29-0.53] unit decrease	NR [9800000] (imputed)	N
1273	chr15	90210353	90210364	rs750619494	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	15q26.1		rs750619494-?	NR	3E-10		0.377948	[0.26-0.5] unit decrease	NR [9800000] (imputed)	N
1273	chr15	90210353	90210364	rs750619494	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q26.1		rs750619494-?	NR	3E-19		0.523351	[0.41-0.64] unit increase	NR [9800000] (imputed)	N
1273	chr15	90210353	90210364	rs750619494	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q26.1		rs750619494-?	NR	1E-11		0.409625	[0.29-0.53] unit increase	NR [9800000] (imputed)	N
1273	chr15	90214768	90214769	rs150822845	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q26.1		rs150822845-?	NR	1E-8		0.476591	[0.3-0.65] unit increase	NR [9800000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Waist-to-hip ratio adjusted for BMI	458,349 European ancestry individuals	NA	15q26.1		rs139271800-?	NR	1E-13		0.221315	[0.16-0.28] unit decrease	NR [9800000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	15q26.1		rs139271800-?	NR	5E-17		0.24976	[0.19-0.31] unit decrease	NR [9800000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	15q26.1		rs139271800-?	NR	1E-19		0.256123	[0.2-0.31] unit increase	NR [9800000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	15q26.1		rs139271800-?	NR	1E-10		0.187848	[0.13-0.25] unit increase	NR [9800000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q26.1	PLIN1	rs139271800-A	0.9992	3E-11		0.2432	[0.17-0.31] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1273	chr15	90214776	90214777	rs139271800	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	15q26.1	NR	rs139271800-A	0.9991	9E-12		0.2393	[0.17-0.31] unit increase	NR [~ 27400000] (imputed)	N
1273	chr15	90227955	90227956	rs7176403	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.1	PEX11A	rs7176403-?	NR	3E-10		0.019214964	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
1273	chr15	90230711	90230712	rs115880135	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	12,578 Hispanic individuals	NA	15q26.1	PEX11A	rs115880135-A	0.9991	2E-7		1.8384	[1.08-2.6] unit increase	Illumina [24662309] (imputed)	N
1273	chr15	90237817	90237818	rs8035597	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q26.1	NR	rs8035597-A	0.68	6E-7		1.08	[-0.9584-3.1184]	Affymetrix [at least 143006] (imputed)	N
1273	chr15	90273069	90273070	rs12148067	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q26.1	NR	rs12148067-A	0.69	9E-7		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
1273	chr15	90304470	90304471	rs28513927	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.1	MESP1, MESP2	rs28513927-T	0.667688	7E-11	(18 ms)	0.0395817	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1274	chr15	90321038	90321039	rs12900413	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	15q26.1	MESP2	rs12900413-C	0.06164	7E-7		8.698	[NR]	Affymetrix [559609]	N
1274	chr15	90328304	90328305	rs1042499	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	15q26.1		rs1042499-T	0.943715	2E-14		0.155893	[0.12-0.19] decrease	Affymetrix [11014269] (imputed)	N
1274	chr15	90328304	90328305	rs1042499	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q26.1	ANPEP	rs1042499-T	0.9422	3E-13		0.22	[0.16-0.28] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1274	chr15	90333850	90333851	rs17239917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	15q26.1	NR	rs17239917-A	NR	6E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1274	chr15	90335255	90335256	rs75149654	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q26.1	ANPEP	rs75149654-T	0.9409	4E-12		0.207	[0.15-0.27] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1274	chr15	90341981	90341982	rs141117801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	15q26.1		rs141117801-T	NR	1E-12		0.0268	[0.019-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1274	chr15	90341981	90341982	rs141117801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	15q26.1		rs141117801-T	NR	5E-20		0.0339	[0.027-0.041] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1274	chr15	90341981	90341982	rs141117801	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	15q26.1	ANPEP	rs141117801-C	0.894118	4E-22		0.00623748	[0.005-0.0075] unit increase	Affymetrix [13995440] (imputed)	N
1274	chr15	90344035	90344036	rs112938613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs112938613-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1274	chr15	90345334	90345335	rs2007084	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	15q26.1	ANPEP	rs2007084-A	0.09	2E-12	(HWESASXX)	0.068	[0.048-0.088] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1274	chr15	90346226	90346227	rs7168849	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	15q26.1	ANPEP	rs7168849-A	0.91	2E-10		6.34	z-score increase	Affymetrix [4312306] (imputed)	N
1274	chr15	90347813	90347814	rs17240268	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	15q26.1	ANPEP	rs17240268-?		6E-11		1.1111112	[1.08-1.15]	Affymetrix, Illumina [43000000] (imputed)	N
1274	chr15	90347919	90347920	rs41276920	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	15q26.1	ANPEP	rs41276920-?	NR	4E-12		0.003	[0.002-0.004] unit decrease	Affymetrix [21347608] (imputed)	N
1274	chr15	90347919	90347920	rs41276920	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	15q26.1	ANPEP	rs41276920-?	NR	6E-18		0.006	[0.0044-0.0076] unit decrease	Affymetrix [21347608] (imputed)	N
1274	chr15	90349460	90349461	rs41276922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	15q26.1	NR	rs41276922-A	NR	5E-10		0.0265	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1274	chr15	90349460	90349461	rs41276922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	15q26.1	NR	rs41276922-A	NR	4E-13		0.031	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1274	chr15	90349460	90349461	rs41276922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	15q26.1	NR	rs41276922-A	NR	7E-19		0.0378	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1274	chr15	90372066	90372067	rs4932143	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	15q26.1	LOC105370965, AP3S2	rs4932143-G	0.27905586673087	6E-11		0.0568	[0.04-0.074] unit increase	NR [5035015] (imputed)	N
1274	chr15	90374256	90374257	rs2028299	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q26.1	AP3S2	rs2028299-A	0.7326	4E-8		0.062	[0.04-0.084] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1274	chr15	90374256	90374257	rs2028299	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	15q26.1	AP3S2	rs2028299-C	0.29	5E-7		1.04	[1.00-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
1274	chr15	90374256	90374257	rs2028299	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	15q26.1	AP3S2	rs2028299-C	0.23	3E-6		1.13	[1.07-1.19]	Illumina [6209637] (imputed)	N
1274	chr15	90374256	90374257	rs2028299	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	15q26.1	AP3S2	rs2028299-C	0.31	2E-11		1.1	[1.07-1.13]	Illumina [568976]	N
1274	chr15	90380213	90380214	rs8031576	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q26.1	NR	rs8031576-C	0.289	2E-29		0.057	[0.047-0.067] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1274	chr15	90380213	90380214	rs8031576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	15q26.1		rs8031576-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1274	chr15	90381277	90381278	rs893617	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q26.1	NR	rs893617-C	0.2813	2E-38		0.0537	[0.046-0.062] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1274	chr15	90384044	90384045	rs2351707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs2351707-T	NR	9E-16		0.0581	[0.044-0.072] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1274	chr15	90393949	90393949	rs11435035	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q26.1	AP3S2	rs11435035-C	0.34	3E-8		1.07	1.04-1.09	Illumina [12557761] (imputed)	N
1274	chr15	90402413	90402413	rs397692051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs397692051-GTCCT	0.746551118	2E-11		0.07361082	[0.052-0.095] unit decrease	Illumina [13429769] (imputed)	N
1274	chr15	90408846	90408847	rs2118847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q26.1		rs2118847-G	NR	4E-10		0.0552	[0.038-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1274	chr15	90416739	90416740	rs7163629	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q26.1		rs7163629-C	0.775619392	1E-9		0.9404153	[0.92201188-0.959186109]	Illumina [8919992] (imputed)	N
1274	chr15	90423292	90423293	rs4932265	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q26.1	AP3S2	rs4932265-T	0.2672	4E-20		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1274	chr15	90428071	90428072	rs1866475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q26.1		rs1866475-G	NR	1E-15		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1274	chr15	90428893	90428894	rs10852123	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q26.1	AP3S2	rs10852123-A	0.201	8E-13		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1274	chr15	90429147	90429148	rs12912009	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	15q26.1	AP3S2	rs12912009-?		3E-9				Illumina [5041948] (imputed)	N
1274	chr15	90429147	90429148	rs12912009	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		15q26.1	AP3S2	rs12912009-G	NR	4E-6		1.0840456		Affymetrix, Illumina [1918233] (imputed)	N
1274	chr15	90434887	90434888	rs7174878	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q26.1	NR	rs7174878-G	0.7504	4E-8		0.0569	[0.037-0.077] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1275	chr15	90447945	90447946	rs7178909	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	15q26.1	NR	rs7178909-?	NR	5E-7	(optimism)			Illumina [535076]	N
1275	chr15	90449522	90449523	rs28678152	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	15q26.1	C15orf38	rs28678152-T	0.262906	4E-8		0.07322625	[0.047-0.099] unit increase	Affymetrix [7288503] (imputed)	N
1275	chr15	90523557	90523558	rs4082730	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	15q26.1	NR	rs4082730-G		3E-6		0.2522	[0.15-0.36] SD units decrease	NR [10700000] (imputed)	N
1275	chr15	90544042	90544043	rs7162815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q26.1	ZNF710	rs7162815-C	0.040068	1E-16		0.04812689	[0.037-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1275	chr15	90544485	90544486	rs7179486	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	15q26.1		rs7179486-A	0.959	1E-11				Affymetrix [10369434] (imputed)	N
1275	chr15	90544485	90544486	rs7179486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q26.1	ZNF710	rs7179486-G	0.040849	3E-9		0.033608776	[0.023-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1275	chr15	90555180	90555181	rs187856913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q26.1	ZNF710	rs187856913-A	0.038753	3E-16		0.046841986	[0.036-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1275	chr15	90559533	90559534	rs113720761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q26.1	ZNF710	rs113720761-G	0.0399	2E-9		0.034921326	[0.023-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q26.1		rs149039920-G	0.981	4E-15				Affymetrix [10369434] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q26.1	ZNF710	rs149039920-A	0.019203	2E-14		0.0724246	[0.054-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q26.1	ZNF710	rs149039920-A	0.0192020000000001	8E-19		0.08357156	[0.065-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q26.1	ZNF710	rs149039920-A	0.019205	4E-43		0.12983552	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs149039920-A	0.0193728	6E-19				Affymetrix, Illumina [24588908] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q26.1	NR	rs149039920-A	0.019559	3E-22		0.078837	[0.063-0.095] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs149039920-G	0.980713	8E-49				Affymetrix, Illumina [17210439] (imputed)	N
1276	chr15	90578541	90578542	rs149039920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q26.1	NR	rs149039920-G	0.980521	4E-52		0.123127	[0.11-0.14] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1276	chr15	90622503	90622504	rs2970358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs2970358-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1276	chr15	90623539	90623540	rs2970356	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q26.1	ZNF710	rs2970356-C	0.679324	4E-11		0.0104594	[0.0074-0.0136] unit decrease	Affymetrix [12370749]	N
1276	chr15	90630891	90630892	rs9972327	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	15q26.1	IDH2	rs9972327-?		6E-6		0.4	[NR] unit decrease	Illumina [5970354] (imputed)	N
1276	chr15	90642705	90642706	rs28508560	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	15q26.1	IDH2	rs28508560-T	0.23	5E-10		1.15	[1.10-1.20]	Affymetrix [710030]	N
1276	chr15	90642705	90642706	rs28508560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q26.1	NR	rs28508560-T	NR	6E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1276	chr15	90649071	90649072	rs9708177	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.1	IDH2	rs9708177-T	0.0791	8E-10		0.308	[0.21-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
1276	chr15	90649071	90649072	rs9708177	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q26.1	chr15mb90	rs9708177-T	0.082620427	9E-7		0.2977	[0.18-0.42] unit increase	Affymetrix [~ 9800000] (imputed)	N
1276	chr15	90649071	90649072	rs9708177	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	IDH2, SEMA4B	rs9708177-C		4E-8		0.274	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1276	chr15	90659850	90659851	rs28484767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q26.1		rs28484767-C	NR	1E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1276	chr15	90668978	90668979	rs9672635	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q26.1	NR	rs9672635-T	0.23	2E-14		0.0166	[0.012-0.021] unit increase	NR [NR]	N
1276	chr15	90670525	90670526	rs8024386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q26.1	IDH2	rs8024386-A	0.7735	2E-8		0.0217	[0.014-0.029] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1276	chr15	90670525	90670526	rs8024386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q26.1	IDH2	rs8024386-A	0.7547	8E-6		0.02091	[0.012-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1276	chr15	90670525	90670526	rs8024386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q26.1	NR	rs8024386-A	0.2245	3E-8	(men)	0.034	[0.022-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1277	chr15	90734425	90734426	rs34560261	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	15q26.1	NR	rs34560261-C	0.8345	3E-35		1.25	[1.21-1.3]	Affymetrix, Illumina [7072771] (imputed)	N
1277	chr15	90734425	90734426	rs34560261	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		15q26.1	SEMA4B	rs34560261-T	0.22	8E-10		1.52	[1.22-1.74]	Illumina [~ 8000000] (imputed)	N
1277	chr15	90734425	90734426	rs34560261	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	15q26.1	SEMA4B	rs34560261-C	0.83	6E-15		1.32	[1.23-1.41]	Illumina [up to 7441713] (imputed)	N
1277	chr15	90734626	90734627	rs36034702	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q26.1	NR	rs36034702-T	0.16	8E-6		0.91	[0.87-0.95]	Illumina [8468885] (imputed)	N
1277	chr15	90741878	90741879	rs12438213	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q26.1	SEMA4B	rs12438213-G	0.12	4E-13		7.26	z-score increase	Affymetrix [4311822] (imputed)	N
1277	chr15	90743885	90743886	rs71405688	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q26.1	SEMA4B	rs71405688-C	0.880809	1E-16		0.00277863	[0.0021-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
1277	chr15	90754855	90754856	rs1533325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q26.1		rs1533325-T	NR	2E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1277	chr15	90754953	90754954	rs1533326	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	15q26.1	SEMA4B	rs1533326-A	0.66	7E-8	(conditional)	1.15	[1.10-1.22]	Illumina [up to 7441713] (imputed)	N
1277	chr15	90756291	90756292	rs12438297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	15q26.1	NR	rs12438297-G	NR	8E-10		0.0226	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1277	chr15	90772004	90772005	rs11547962	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q26.1	SEMA4B	rs11547962-G	0.60437	7E-12		0.00340463	[0.0024-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
1277	chr15	90772004	90772005	rs11547962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q26.1	NR	rs11547962-A	NR	2E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1277	chr15	90789532	90789533	rs145969980	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	15q26.1	NR	rs145969980-G	0.0149	3E-6		0.5928	[0.35-0.84] unit increase	Illumina [10677593] (imputed)	N
1277	chr15	90797009	90797010	rs12913420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	15q26.1		rs12913420-C	NR	3E-9		0.0604	[0.04-0.08] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1277	chr15	90818826	90818827	rs4595780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q26.1		rs4595780-A	NR	7E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1278	chr15	90853932	90853933	rs7161937	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		NGRN	rs7161937-G	0.18	3E-6		0.14	[0.08-0.2] unit decrease	Illumina [1679420] (imputed)	N
1278	chr15	90885805	90885806	rs8030704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q26.1		rs8030704-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1278	chr15	90887583	90887584	rs6496663	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	15q26.1	NGRN	rs6496663-C	NR	1E-12		1.0896807	NR	Affymetrix, Illumina [8278136] (imputed)	N
1278	chr15	90893667	90893668	rs6496667	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	15q26.1	ZNF774	rs6496667-A	0.35	1E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [1948139]	N
1278	chr15	90936224	90936225	rs2601191	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	15q26.1	IQGAP1	rs2601191-T	0.473	2E-11		0.028	[0.02-0.036] unit decrease	NR [NR] (imputed)	N
1278	chr15	90936224	90936225	rs2601191	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	15q26.1	IQGAP1	rs2601191-T	0.473	2E-11		0.028	[0.02-0.036] unit decrease	NR [7647814] (imputed)	N
1278	chr15	90936224	90936225	rs2601191	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	15q26.1	IQGAP1	rs2601191-T	0.4651	6E-12		1.08	[1.057-1.103]	Affymetrix [15688218] (imputed)	N
1278	chr15	90960114	90960115	rs11857092	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	15q26.1		rs11857092-?	NR	5E-8		0.94	[0.92-0.96]	Illumina [5170515] (imputed)	N
1278	chr15	90960653	90960654	rs10459676	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	15q26.1		rs10459676-A	0.679	1E-30				Affymetrix [10369434] (imputed)	N
1279	chr15	90975516	90975517	rs16944405	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	NA	15q26.1	IQGAP1	rs16944405-A	NR	3E-8		0.796443	[0.72-0.88]	Illumina [16121080] (imputed)	N
1279	chr15	90977332	90977333	rs8042861	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	15q26.1	IQGAP1	rs8042861-A	0.45	2E-9		1.07		Illumina [161311]	N
1279	chr15	90988383	90988384	rs6496676	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	15q26.1	NR	rs6496676-A	0.6894	3E-18		1.0586492	[1.05-1.07]	Affymetrix [15688218] (imputed)	N
1279	chr15	91000156	91000158	rs145308728	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	15q26.1	IQGAP1	rs145308728-G	0.1863	1E-18		0.04057697	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91004481	91004482	rs144954201	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		IQGAP1	rs144954201-?	NR	7E-10	(female)	0.59027	[NR] unit increase	Affymetrix [NR] (imputed)	N
1279	chr15	91005364	91005365	rs1145324	31903573	van Reij RRI	2020-01-01	Anaesthesia	The association between genome-wide polymorphisms and chronic postoperative pain: a prospective observational study.	Chronic postoperative pain	34 European ancestry cases, 269 European ancestry controls	11 European ancestry cases, 39 European ancestry controls	15q26.1	IQGAP1	rs1145324-G	0.04	4E-6		2.3863	NR unit increase	Illumina [6293655] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.514317	5E-12		0.015306943	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.514336	2E-73		0.04022897	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.514337	6E-59		0.035954453	[0.032-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs2074585-A	0.565039	4E-49				Affymetrix, Illumina [19905671] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	15q26.1	NR	rs2074585-A	0.513762	9E-9		0.0160303	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.1		rs2074585-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	15q26.1		rs2074585-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q26.1		rs2074585-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q26.1	NR	rs2074585-G	0.486853	1E-37		0.0395814	[0.034-0.046] unit increase	NR [19129689] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		15q26.1	CRTC3, IQGAP1, ZNF774	rs2074585-A	NR	2E-11		0.041139	NR unit decrease	NR [NR] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.5143	2E-16		0.02881194	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.5144	2E-20		0.03212169	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91009483	91009484	rs2074585	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	15q26.1	IQGAP1	rs2074585-A	0.5143	1E-13		0.0259891	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91011261	91011262	rs2238325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	15q26.1		rs2238325-G	0.404269	5E-10		0.0280042	[0.019-0.037] unit increase	Illumina [13471431] (imputed)	N
1279	chr15	91021411	91021412	rs28539372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	15q26.1		rs28539372-A	NR	4E-57		0.0353	[0.031-0.04] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1279	chr15	91021411	91021412	rs28539372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q26.1	IQGAP1	rs28539372-A	0.319123	2E-47		0.034450416	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr15	91021411	91021412	rs28539372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	15q26.1	IQGAP1	rs28539372-A	0.319092	6E-63		0.039872132	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1279	chr15	91021411	91021412	rs28539372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs28539372-A	0.337372	8E-85				Affymetrix, Illumina [23472807] (imputed)	N
1279	chr15	91021411	91021412	rs28539372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	15q26.1	NR	rs28539372-A	0.319096	3E-78		0.038051	[0.034-0.042] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1279	chr15	91026458	91026459	rs8030299	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	15q26.1		rs8030299-G	0.676	8E-28				Affymetrix [10369434] (imputed)	N
1279	chr15	91026476	91026477	rs8040585	32868391	Leng RX	2020-08-31	Ann Rheum Dis	Identification of new susceptibility loci associated with rheumatoid arthritis.	Rheumatoid arthritis	5,900 East Asian cases, 20,521 East Asian controls, 14,361 European ancestry cases, 43,923 European ancestry controls	NA	15q26.1	IQGAP1	rs8040585-C		2E-8		1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
1279	chr15	91036854	91036855	rs7173724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q26.1	IQGAP1	rs7173724-G	0.323977	5E-27		0.02554484	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1279	chr15	91037534	91037534	rs113071601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q26.1	NR	rs113071601-I	0.532983	3E-52		0.032535	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1279	chr15	91038884	91038884	rs199894206	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	15q26.1		rs199894206-CT	NR	2E-10		1.12	[1.08-1.16]	NR [13810676] (imputed)	N
1279	chr15	91039526	91039527	rs11636089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	15q26.1		rs11636089-T	NR	3E-17		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1279	chr15	91043764	91043765	rs11609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs11609-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1279	chr15	91045407	91045408	rs3540	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	15q26.1		rs3540-G	0.676	2E-35				Affymetrix [10369434] (imputed)	N
1279	chr15	91045407	91045408	rs3540	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	15q26.1	NR	rs3540-G	0.6767	2E-13		1.0441684	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1279	chr15	91045407	91045408	rs3540	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	15q26.1	IQGAP1	rs3540-G	0.65	3E-11		1.036	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1279	chr15	91045407	91045408	rs3540	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	15q26.1	IQGAP1	rs3540-A	0.3237	1E-22		0.03771244	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91046711	91046712	rs11073930	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q26.1	IQGAP1	rs11073930-G	0.450477	6E-34		0.0227182	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
1279	chr15	91059189	91059190	rs10152831	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	15q26.1	intergenic	rs10152831-T	0.2069	1E-10		0.02855838	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1279	chr15	91064689	91064690	rs12443252	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q26.1	CRTC3	rs12443252-T	0.549668	5E-9		0.018479	[0.012-0.025] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1279	chr15	91070543	91070544	rs11632673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q26.1		rs11632673-?	NR	6E-38				NR [~ 8900000] (imputed)	N
1279	chr15	91070543	91070544	rs11632673	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q26.1		rs11632673-?	NR	1E-35		0.0244013	[0.02-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1279	chr15	91072961	91072962	rs56402930	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	15q26.1	NR	rs56402930-A	0.0928426	8E-6		0.0161009	[0.009-0.0232] unit increase	Affymetrix [NR] (imputed)	N
1279	chr15	91072961	91072962	rs56402930	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q26.1	CRTC3	rs56402930-A	0.0928426	4E-8		0.0196542	[0.013-0.027] unit increase	Affymetrix [NR] (imputed)	N
1279	chr15	91074175	91074176	rs117119665	31903573	van Reij RRI	2020-01-01	Anaesthesia	The association between genome-wide polymorphisms and chronic postoperative pain: a prospective observational study.	Chronic postoperative pain	34 European ancestry cases, 269 European ancestry controls	11 European ancestry cases, 39 European ancestry controls	15q26.1	CRTC3	rs117119665-G	0.04	2E-6		2.4209	NR unit increase	Illumina [6293655] (imputed)	N
1279	chr15	91079862	91079863	rs11637971	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q26.1		rs11637971-?	NR	1E-24		0.0220948	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1279	chr15	91079862	91079863	rs11637971	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q26.1	CRTC3	rs11637971-A	0.303009	7E-8	(women)	0.027044	[0.017-0.037] unit decrease	NR [17166351] (imputed)	N
1279	chr15	91079862	91079863	rs11637971	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q26.1	CRTC3	rs11637971-A	0.301908	1E-14		0.0268891	[0.02-0.034] unit decrease	NR [17166351] (imputed)	N
1279	chr15	91079862	91079863	rs11637971	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	15q26.1	CRTC3	rs11637971-A	0.300647	5E-7	(men)	0.0277388	[0.017-0.039] unit decrease	NR [17166351] (imputed)	N
1279	chr15	91082531	91082532	rs3862435	26491034	Sarzynski MA	2015-10-21	Br J Sports Med	Genomic and transcriptomic predictors of triglyceride response to regular exercise.	Response to exercise (triglyceride level interaction)	478 European ancestry individuals from 99 families	NA	15q26.1	CRTC3	rs3862435-G	0.91	7E-6		0.6	[NR] unit decrease	Illumina [2396589] (imputed)	N
1279	chr15	91085640	91085641	rs145778816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.1		rs145778816-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1280	chr15	91109610	91109611	rs6496691	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q26.1	NR	rs6496691-G	0.150168	2E-9		0.016099	[0.011-0.021] unit increase	Affymetrix [15000001]	N
1280	chr15	91114375	91114376	rs12915189	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	15q26.1	CRTC3	rs12915189-A	0.29	3E-6	(inspection time)	0.14	[0.08-0.20] unit increase	Illumina [~ 610000]	N
1280	chr15	91139097	91139098	rs16944613	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	15q26.1	CRTC3	rs16944613-?		1E-7		1.319	[NR]	Affymetrix [492217] (imputed)	N
1280	chr15	91139097	91139098	rs16944613	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	15q26.1	CRTC3	rs16944613-?		2E-6		1.343	[NR]	Affymetrix [492217] (imputed)	N
1280	chr15	91166607	91166608	rs5011652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	15q26.1	CRTC3, RP11-387D10.2	rs5011652-C	0.758587	1E-14		0.019998804	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1280	chr15	91166607	91166608	rs5011652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	15q26.1	CRTC3, RP11-387D10.2	rs5011652-C	0.758566	8E-16		0.020878118	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1280	chr15	91171089	91171089	rs202136005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	15q26.1	NR	rs202136005-I	0.759306	7E-17		0.019999	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1280	chr15	91172900	91172901	rs7495132	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	15q26.1	NR	rs7495132-T	0.12	8E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
1280	chr15	91172900	91172901	rs7495132	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	15q26.1	CRTC3	rs7495132-?		3E-6				Illumina [9578670] (imputed)	N
1280	chr15	91172900	91172901	rs7495132	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	15q26.1	CRTC3	rs7495132-?		3E-7				Illumina [9725440] (imputed)	N
1280	chr15	91172900	91172901	rs7495132	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	15q26.1	CRTC3	rs7495132-C	0.891	9E-11		1.134	[1.082-1.189]	Affymetrix, Illumina [1230000] (imputed)	N
1280	chr15	91173700	91173701	rs6496712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	15q26.1		rs6496712-T	NR	1E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1280	chr15	91175859	91175860	rs141991588	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	15q26.1	CRTC3-AS1	rs141991588-A	NR	3E-8		0.467	[0.3-0.63] unit increase	NR [11024754] (imputed)	N
1280	chr15	91181488	91181489	rs7165170	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q26.1	NR	rs7165170-A	0.82	4E-7	(EA)	1.0670352		Affymetrix, Illumina [~ 9000000] (imputed)	N
1280	chr15	91181488	91181489	rs7165170	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	15q26.1	NR	rs7165170-A	0.82	7E-7	(EA)	1.0798767	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1280	chr15	91189023	91189024	rs12909526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q26.1		rs12909526-T	NR	7E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1280	chr15	91190934	91190935	rs76758258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs76758258-A	0.258372	6E-17				Affymetrix, Illumina [19872809] (imputed)	N
1280	chr15	91201272	91201273	rs2010672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	15q26.1	RP11-387D10.2	rs2010672-T	0.3182	7E-11		0.02559584	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1280	chr15	91201272	91201273	rs2010672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	15q26.1	RP11-387D10.2	rs2010672-T	0.3182	2E-9		0.02349151	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1280	chr15	91201272	91201273	rs2010672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	15q26.1	RP11-387D10.2	rs2010672-T	0.3182	5E-10		0.02439036	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1280	chr15	91202503	91202504	rs10083558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	15q26.1		rs10083558-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1281	chr15	91281210	91281211	rs35787687	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	15q26.1	BLM, CRTC3, FURIN, FES	rs35787687-C	NR	9E-6	(daytime napping duration)	0.09091	[0.051-0.131] unit increase	Affymetrix [7141204] (imputed)	N
1281	chr15	91312822	91312823	rs3815003	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	15q26.1	NR	rs3815003-T	0.6849	8E-6		0.067	[0.038-0.096] unit increase	Illumina [up to 1980188] (imputed)	N
1281	chr15	91313223	91313224	rs8031341	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	15q26.1	NR	rs8031341-G	0.3251	4E-6		0.0687	[0.039-0.098] unit decrease	Illumina [up to 1980188] (imputed)	N
1281	chr15	91353583	91353584	rs11073953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs11073953-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1282	chr15	91387378	91387379	rs74874915	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q26.1	intergenic	rs74874915-A	0.127	1E-6		2.55	[1.72-3.76]	Illumina [1556551]	N
1282	chr15	91403673	91403674	rs7166599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	15q26.1		rs7166599-G	0.136642	4E-9		0.0307563	[0.02-0.041] unit increase	Illumina [13477770] (imputed)	N
1282	chr15	91403673	91403674	rs7166599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	15q26.1		rs7166599-G	0.136643	2E-8		0.030188	[0.02-0.041] unit increase	Illumina [13477767] (imputed)	N
1282	chr15	91404704	91404705	rs4932370	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	15q26.1	FURIN, FES	rs4932370-?	NR	3E-7				NR [~ 8000000] (imputed)	N
1282	chr15	91404704	91404705	rs4932370	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	15q26.1	FURIN, FES	rs4932370-?	NR	3E-8				NR [~ 8000000] (imputed)	N
1282	chr15	91404704	91404705	rs4932370	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	15q26.1	RN7SL363P, FURIN	rs4932370-?	NR	6E-7				NR [~ 8000000] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	15q26.1	BLM, FURIN	rs4932371-C	0.32	2E-11		1.06	[1.03-1.09]	Illumina [5167567] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q26.1	NR	rs4932371-T		6E-8	(EA)	0.391	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q26.1	NR	rs4932371-T		1E-8		0.368	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	NR	rs4932371-T		1E-23		0.438	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	NR	rs4932371-T		2E-13		0.214	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q26.1	NR	rs4932371-T		8E-6	(EA)	0.209	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q26.1	NR	rs4932371-T		8E-6		0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91404787	91404788	rs4932371	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	NR	rs4932371-T		1E-17		0.225	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91409513	91409514	rs8029440	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	15q26.1	FURIN	rs8029440-G	0.65	3E-8				NR [> 9500000] (imputed)	N
1282	chr15	91409513	91409514	rs8029440	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q26.1	FURIN	rs8029440-A	0.35	1E-17	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91412849	91412850	rs6145676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q26.1	NR	rs6145676-I	0.478001	1E-18		0.01825	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1282	chr15	91412850	91412850	rs57515981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q26.1		rs57515981-AAAGGCAG	NR	5E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1282	chr15	91412850	91412850	rs57515981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs57515981-AAAGGCAG	NR	1E-8		0.0809	[0.053-0.109] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1282	chr15	91412850	91412850	rs57515981	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	15q26.1		rs57515981-AAAGGCAG	0.4823499	8E-6		1.07		Affymetrix [15650645] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q26.1	NR	rs17514846-A	0.1441	5E-9	(East Asian)	0.5307	[0.35-0.71] unit increase	Illumina [6200000] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	15q26.1	FURIN	rs17514846-A	0.1441	2E-7	(Japanese)	0.3956	[0.25-0.54] unit increase	Illumina [6200000] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	15q26.1	FURIN	rs17514846-A	0.1441	3E-9	(Japanese)	0.1125	[0.075-0.15] unit increase	Illumina [6200000] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q26.1	FURIN	rs17514846-C	NR	6E-11	(EA)	1.076	[1.05-1.1]	Illumina [6627481] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	15q26.1	FES, FURIN, MAN2A2	rs17514846-?	NR	3E-12		1.0706638	[1.05-1.09]	Illumina [8000000] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	15q26.1	FURIN	rs17514846-?	NR	3E-8		0.02987	[0.019-0.04] unit increase	Illumina [6108953] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	15q26.1	FURIN	rs17514846-C	NR	1E-7				Affymetrix [11535925] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	15q26.1	FURIN	rs17514846-C	0.53	7E-10		0.0139	[0.0094-0.0184] unit decrease	Affymetrix [11535925] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	15q26.1	FURIN	rs17514846-C	NR	7E-7				Affymetrix [11535925] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q26.1	FURIN	rs17514846-A	0.4605	1E-26		0.0559	[0.046-0.066] unit increase	Affymetrix [at least 7947838] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q26.1	FURIN	rs17514846-A	0.4577	8E-27		0.0613	[0.05-0.072] unit increase	NR [8041861] (imputed)	N
1282	chr15	91416549	91416550	rs17514846	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	15q26.1	FURIN	rs17514846-C	0.488107379015702	2E-10		0.32957354	[0.23-0.43] unit decrease	Illumina [247039]	N
1282	chr15	91416549	91416550	rs17514846	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q26.1	FURIN, FES	rs17514846-A	0.440264	3E-7		1.05	[1.03- 1.07]	Affymetrix, Illumina [8600000] (imputed)	N
1282	chr15	91418296	91418297	rs8032315	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	15q26.1	FURIN	rs8032315-A	0.3246	6E-9		0.016035372	[0.011-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1282	chr15	91418296	91418297	rs8032315	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q26.1	FES, FURIN	rs8032315-?		2E-8		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1282	chr15	91420939	91420940	rs2071410	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q26.1	FURIN	rs2071410-C	0.68	1E-40	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91420972	91420973	rs1573643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q26.1		rs1573643-C	NR	5E-33		0.0269	[0.023-0.031] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1282	chr15	91420972	91420973	rs1573643	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q26.1	FURIN	rs1573643-T	0.67	5E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91420972	91420973	rs1573643	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q26.1	FURIN	rs1573643-T	0.74	1E-24	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91420972	91420973	rs1573643	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q26.1	FURIN	rs1573643-T	0.74	6E-37	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91422542	91422543	rs8039305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	15q26.1		rs8039305-C	NR	4E-9		0.0307	[0.021-0.041] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91422542	91422543	rs8039305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	15q26.1		rs8039305-T	0.524	9E-9				Affymetrix [10369434] (imputed)	N
1282	chr15	91422542	91422543	rs8039305	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	15q26.1		rs8039305-?	NR	5E-11				NR [2625067]	N
1282	chr15	91422542	91422543	rs8039305	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA	15q26.1		rs8039305-?	NR	2E-8				NR [2625067]	N
1282	chr15	91422542	91422543	rs8039305	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	15q26.1		rs8039305-?	NR	3E-9				NR [2625067]	N
1282	chr15	91422542	91422543	rs8039305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q26.1	FURIN	rs8039305-C	0.476039	6E-15		0.017378971	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1282	chr15	91422542	91422543	rs8039305	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q26.1	FURIN	rs8039305-T	0.524054	1E-10		0.0127294	[0.0089-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1282	chr15	91422542	91422543	rs8039305	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	15q26.1	NR	rs8039305-T	0.857	7E-9	(East Asian)	0.0948	[0.063-0.127] unit decrease	Illumina [6200000] (imputed)	N
1282	chr15	91423542	91423543	rs6224	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	15q26.1	FURIN	rs6224-T	0.4672	6E-21		0.9693829	[NR]	Illumina [12493444] (imputed)	N
1282	chr15	91423542	91423543	rs6224	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	15q26.1	FURIN	rs6224-G	0.53	2E-9				NR [7320282]	N
1282	chr15	91423542	91423543	rs6224	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	15q26.1	FURIN, FES	rs6224-G	0.52	1E-10		0.2507	[0.17-0.33] years increase	NR [up to 9000000] (imputed)	N
1282	chr15	91423542	91423543	rs6224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q26.1		rs6224-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1282	chr15	91425231	91425232	rs6227	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	15q26.1	NR	rs6227-C	0.66463	2E-8		1.081081	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	15q26.1	FURIN	rs4702-G	0.442	4E-13		7.263552	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q26.1		rs4702-G	0.44	7E-75		18.31	z score increase	Affymetrix [9061022] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q26.1		rs4702-G	0.44	6E-19		8.89	z score increase	Affymetrix [9061022] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q26.1	NR	rs4702-G	0.4458	1E-17				NR [9056863] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q26.1		rs4702-G	0.442	1E-23		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	15q26.1	FURIN	rs4702-G	0.443365	1E-16		0.0172063	[0.013-0.021] unit decrease	NR [16516521] (imputed)	N
1282	chr15	91426559	91426560	rs4702	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	15q26.1		rs4702-?	NR	3E-19		0.0241	unit decrease	NR [NR]	N
1282	chr15	91426559	91426560	rs4702	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	15q26.1	FURIN	rs4702-G	0.446	4E-9		1.05897	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
1282	chr15	91426559	91426560	rs4702	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	15q26.1	NR	rs4702-A	0.55	1E-13		0.026	[0.02-0.032] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1282	chr15	91426559	91426560	rs4702	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	15q26.1	NR	rs4702-A	0.5626	6E-13		0.08233309	[0.06-0.105] unit decrease	NR [NR]	N
1282	chr15	91426559	91426560	rs4702	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	15q26.1	NR	rs4702-A	NR	5E-9		5.835	NR z score decrease	NR [NR]	N
1282	chr15	91426559	91426560	rs4702	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	15q26.1	NR	rs4702-A	0.5626	1E-10		0.07342183	[0.051-0.096] unit decrease	NR [NR]	N
1282	chr15	91426559	91426560	rs4702	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	FES	rs4702-A	0.5566	6E-13		0.0137	[0.01-0.0174] unit decrease	Affymetrix [18391927] (imputed)	N
1282	chr15	91426559	91426560	rs4702	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	15q26.1	NR	rs4702-?		8E-14				NR [8377093]	N
1282	chr15	91426559	91426560	rs4702	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	15q26.1	NR	rs4702-?		5E-12				NR [8377093]	N
1282	chr15	91426559	91426560	rs4702	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	15q26.1	NR	rs4702-?		5E-11				NR [520857]	N
1282	chr15	91426559	91426560	rs4702	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	15q26.1	FURIN, FES	rs4702-?		2E-11				NR [6786993] (imputed)	N
1282	chr15	91426559	91426560	rs4702	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	15q26.1	NR	rs4702-?	NR	2E-15		1.077238	[1.06-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1282	chr15	91426559	91426560	rs4702	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	15q26.1	FURIN	rs4702-?	NR	3E-11		0.01349165	[0.0095-0.0175] unit increase	NR [7306098]	N
1282	chr15	91426559	91426560	rs4702	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	15q26.1	NR	rs4702-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
1282	chr15	91426559	91426560	rs4702	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.1	NR	rs4702-G	0.4438	7E-16		1.049318	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1282	chr15	91426559	91426560	rs4702	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.1	NA	rs4702-G	0.4438	5E-9	(Male)	1.059322	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1282	chr15	91426559	91426560	rs4702	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	15q26.1	FES	rs4702-A	0.5571	6E-17		0.019928893	[0.015-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
1282	chr15	91426559	91426560	rs4702	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q26.1	FURIN	rs4702-A	0.549	3E-9		0.007	[0.0046-0.0094] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1282	chr15	91426559	91426560	rs4702	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	15q26.1	VPS33B	rs4702-A	0.438141	2E-9		6.0	z score decrease	NR [10847151] (imputed)	N
1282	chr15	91426559	91426560	rs4702	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	15q26.1	FES, FURIN	rs4702-?		1E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1282	chr15	91426559	91426560	rs4702	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	15q26.1	FURIN	rs4702-A	0.556981	3E-10		0.0243427	[0.017-0.032] unit increase	Affymetrix [641018] (imputed)	N
1282	chr15	91426559	91426560	rs4702	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q26.1	NR	rs4702-G	NR	3E-12		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1282	chr15	91426559	91426560	rs4702	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	15q26.1	FES, FURIN, MAN2A2	rs4702-G	0.438	8E-14		1.0845987	[1.06-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
1282	chr15	91427611	91427612	rs12906125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q26.1		rs12906125-A	NR	1E-36		0.0282	[0.024-0.033] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1282	chr15	91427611	91427612	rs12906125	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q26.1	FES	rs12906125-A	0.307922	7E-19		1.08	[1.06-1.10]	NR [8126035] (imputed)	N
1282	chr15	91427611	91427612	rs12906125	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	15q26.1	FES	rs12906125-G	0.69	1E-8		0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1282	chr15	91427691	91427692	rs138682554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q26.1		rs138682554-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1282	chr15	91427691	91427692	rs138682554	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	15q26.1	FURIN, FES	rs138682554-A	0.03	1E-9		0.952	[0.64-1.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
1282	chr15	91427871	91427872	rs35346340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q26.1		rs35346340-C	NR	4E-28		0.0258	[0.021-0.03] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1282	chr15	91427871	91427872	rs35346340	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q26.1	FES	rs35346340-C	0.32	5E-19	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91428196	91428197	rs2071382	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.1	FES	rs2071382-T	0.4353	2E-32		0.4092	[0.34-0.48] mmHg increase	Affymetrix [NR] (imputed)	N
1282	chr15	91428196	91428197	rs2071382	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.1	FES	rs2071382-T	0.4374	2E-19		0.2317	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1282	chr15	91428196	91428197	rs2071382	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q26.1	NR	rs2071382-T	0.473816	1E-13		0.023013	[0.017-0.029] unit increase	NR [19129689] (imputed)	N
1282	chr15	91428196	91428197	rs2071382	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	15q26.1	FURIN, FES	rs2071382-T	0.464	7E-13		1.06	[1.05-1.08]	Affymetrix [9149595] (imputed)	N
1282	chr15	91428289	91428290	rs11539637	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	15q26.1	NR	rs11539637-T	0.47	2E-8		0.019	[0.013-0.025] z score increase	Affymetrix [up to 10400000] (imputed)	N
1282	chr15	91428289	91428290	rs11539637	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	15q26.1	FES	rs11539637-T	NR	4E-9		1.063	[1.04-1.08]	Illumina [6627481] (imputed)	N
1282	chr15	91428520	91428521	rs764429222	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	15q26.1	FES	rs764429222-C	0.324007	2E-14		1.09	[1.07-1.12]	NR [10903881] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	15q26.1		rs7183988-G	NR	6E-24		0.0738	[0.059-0.088] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	15q26.1		rs7183988-G	NR	2E-14		0.0661	[0.049-0.083] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q26.1	NR	rs7183988-G	0.526501	6E-18		0.017034	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q26.1	FURIN, FES, MAN2A2	rs7183988-?		7E-10				NR [7428630] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q26.1	FES, FURIN	rs7183988-G	0.52596	1E-20		0.029236	[0.023-0.035] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	15q26.1	FES	rs7183988-T	0.472301	4E-21		0.07811903	[0.062-0.094] unit increase	Affymetrix [7288503] (imputed)	N
1282	chr15	91428588	91428589	rs7183988	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.1	NA	rs7183988-G	0.5277	2E-8	(Female)	1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1282	chr15	91428635	91428636	rs7177338	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q26.1		rs7177338-G	0.48	2E-29		11.29	z score increase	Affymetrix [9061022] (imputed)	N
1282	chr15	91428635	91428636	rs7177338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q26.1		rs7177338-A	NR	9E-19		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1282	chr15	91428635	91428636	rs7177338	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.1	NR	rs7177338-G	0.4709	1E-17				NR [9056863] (imputed)	N
1282	chr15	91428635	91428636	rs7177338	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	15q26.1	FES	rs7177338-?	NR	2E-34		0.0643574	[0.054-0.075] unit decrease	Illumina [4804024] (imputed)	N
1282	chr15	91428635	91428636	rs7177338	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	15q26.1	FES	rs7177338-?	NR	2E-11		0.08792	[0.062-0.114] unit decrease	Illumina [19707525] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	15q26.1		rs1894400-T	NR	4E-22		0.0716	[0.057-0.086] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	15q26.1		rs1894400-T	NR	4E-35		0.0729	[0.061-0.084] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	15q26.1		rs1894400-?	NR	1E-9		0.0568	[0.036-0.078] unit decrease	NR [NR] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	15q26.1	FES	rs1894400-T	0.323994	8E-19		0.07594121	[0.059-0.093] unit increase	Affymetrix [7288503] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	15q26.1	FES	rs1894400-T	0.325947	8E-33		0.07666352	[0.064-0.089] unit increase	Affymetrix [7288503] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	15q26.1		rs1894400-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	15q26.1	FES	rs1894400-T	0.32	4E-19	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q26.1	FES	rs1894400-T	0.32	6E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91428954	91428955	rs1894400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	15q26.1	FES	rs1894400-T	0.32	2E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs1894401-A	0.827463077	9E-11		0.10800653	[0.075-0.141] unit decrease	Illumina [13427711] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs1894401-A	NR	1E-16		0.0789	[0.06-0.098] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q26.1		rs1894401-A	NR	3E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs1894401-A	NR	2E-18		0.0855	[0.066-0.105] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	15q26.1		rs1894401-A	NR	2E-18		0.0612	[0.047-0.075] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	15q26.1		rs1894401-A	NR	3E-8		0.0318	[0.02-0.043] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs1894401-A	0.587311	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs1894401-A	0.563703	3E-17				Affymetrix, Illumina [23114412] (imputed)	N
1282	chr15	91429041	91429042	rs1894401	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	15q26.1	FES	rs1894401-G	0.472142	6E-19		0.07033835	[0.055-0.086] unit increase	Affymetrix [7288503] (imputed)	N
1282	chr15	91429175	91429176	rs7497304	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	15q26.1	FES	rs7497304-?	NR	2E-18		0.0572501	NR unit decrease	Affymetrix [464137]	N
1282	chr15	91429175	91429176	rs7497304	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	15q26.1	FES	rs7497304-T	0.32	8E-41	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91429286	91429287	rs4932373	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q26.1	FES, FURIN	rs4932373-A	0.679564	3E-13		0.020084	[0.015-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1282	chr15	91429286	91429287	rs4932373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q26.1		rs4932373-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1282	chr15	91429286	91429287	rs4932373	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	15q26.1	FES	rs4932373-C	0.326	2E-17				Affymetrix [28000000] (imputed)	N
1282	chr15	91429286	91429287	rs4932373	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q26.1	FES, FURIN	rs4932373-A	0.694	2E-25		0.073	[0.059-0.087] unit decrease	Affymetrix [7947838] (imputed)	N
1282	chr15	91431523	91431524	rs4533264	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	15q26.1	FES	rs4533264-T	0.2	5E-8		1.14	[1.09-1.19]	Illumina [5932413] (imputed)	N
1282	chr15	91431807	91431807	rs113738722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	15q26.1		rs113738722-GGGGCTGTTTT	0.812790197	8E-10		0.110044956	[0.075-0.145] unit decrease	Illumina [13427135] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	15q26.1	FES, MAN2A2	rs2521501-A	0.677316	2E-9		0.014916	[0.01-0.02] unit increase	Affymetrix [19400838] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	15q26.1	FES	rs2521501-A	0.6768	4E-8		0.0087	[0.0056-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.1		rs2521501-?	NR	1E-59				NR [~ 8900000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q26.1	FES	rs2521501-A	0.67	7E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	15q26.1	FES	rs2521501-A	0.67	3E-31	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q26.1	FURIN, FES	rs2521501-?	NR	6E-45				Affymetrix, Illumina [18800000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	15q26.1	FURIN, FES	rs2521501-?		3E-40				Affymetrix, Illumina [18800000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q26.1	FURIN, FES	rs2521501-T	0.328	1E-12	(EA, initial)	0.607	[0.44-0.78] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	15q26.1	FURIN, FES	rs2521501-T	0.328	1E-13	(EA, initial)	0.385	[0.28-0.49] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	15q26.1	FES	rs2521501-A		4E-6		0.33	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	FES	rs2521501-A		2E-26		0.497	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	FES	rs2521501-A		7E-14		0.235	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.1	FES	rs2521501-A		2E-22		0.272	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	15q26.1	FURIN, FES	rs2521501-A	0.684	3E-20		0.639	[0.5-0.77] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1282	chr15	91437387	91437388	rs2521501	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	15q26.1	FURIN, FES	rs2521501-A	0.684	2E-17		0.358	[0.28-0.44] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1282	chr15	91437387	91437388	rs2521501	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	15q26.1	FURIN, FES	rs2521501-A	0.7276	6E-8		0.689	[0.44-0.94] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	15q26.1	FURIN, FES	rs2521501-T	0.29	2E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	FURIN, FES	rs2521501-T	0.31	5E-19		0.65	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	FURIN, FES	rs2521501-T	0.31	7E-7		0.059	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	15q26.1	FURIN, FES	rs2521501-T	0.31	2E-15		0.359	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1282	chr15	91437387	91437388	rs2521501	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	15q26.1	FES	rs2521501-T	0.37	3E-8	(Mean Arterial Pressure)	0.344	[0.22-0.46] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1282	chr15	91439417	91439424	rs145583381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	15q26.1	NR	rs145583381-C	NR	8E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1282	chr15	91441206	91441207	rs2677737	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	15q26.1	NR	rs2677737-G		1E-6				Illumina [458865]	N
1282	chr15	91450440	91450441	rs2677744	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q26.1	MAN2A2	rs2677744-?	NR	1E-6				Affymetrix [504219]	N
1283	chr15	91499985	91499986	rs4932380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	15q26.1		rs4932380-T	0.459132	6E-9		0.0218747	[0.014-0.029] unit decrease	Illumina [13476299] (imputed)	N
1283	chr15	91500295	91500296	rs10852140	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q26.1	RCCD1	rs10852140-T	0.174	2E-7	(AA)	0.047	[0.029-0.065] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1283	chr15	91500295	91500296	rs10852140	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q26.1	RCCD1	rs10852140-T		3E-9				Affymetrix, Illumina [17972582] (imputed)	N
1283	chr15	91502382	91502383	rs1105291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.1		rs1105291-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1283	chr15	91505778	91505779	rs79548680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	15q26.1		rs79548680-C	NR	2E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1283	chr15	91505778	91505779	rs79548680	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	15q26.1	PRC1	rs79548680-C	NR	4E-6	(Japanese)	1.07581	[1.04281-1.10986]	Illumina [7521072] (imputed)	N
1283	chr15	91506421	91506422	rs8028409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q26.1		rs8028409-T	NR	4E-21		0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1283	chr15	91506421	91506422	rs8028409	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	15q26.1	RCCD1	rs8028409-T	NR	1E-110		0.129599	[0.12-0.14] unit increase	Affymetrix [16832071] (imputed)	N
1283	chr15	91506421	91506422	rs8028409	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	15q26.1	PRC1-AS1	rs8028409-T	0.1301	9E-123		0.1244932	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q26.1	PRC1-AS1	rs8037137-C	0.129742	6E-18		0.02914947	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs8037137-C	0.20698	3E-30				Affymetrix, Illumina [24588908] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q26.1	NR	rs8037137-C	0.131239	1E-26		0.029523	[0.024-0.035] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	15q26.1	NR	rs8037137-C	0.133618999999999	1E-7		1.1235955	[1.08-1.18]	Illumina [11595112] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	15q26.1	NR	rs8037137-C	0.134	5E-7		1.098901	[1.06-1.15]	Illumina [11595112] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	15q26.1	NR	rs8037137-C	0.133618999999999	7E-8		1.1363636	[1.09-1.19]	Illumina [11595112] (imputed)	N
1283	chr15	91506636	91506637	rs8037137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q26.1	PRC1-AS1	rs8037137-C	0.1299	8E-11		0.03544713	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1283	chr15	91507008	91507008	rs35006130	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	15q26.1	RCCD1	rs35006130-GTT	0.893	3E-8		0.045	[0.029-0.061] SD units increase	NR [9926106] (imputed)	N
1283	chr15	91509214	91509215	rs77554484	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q26.1	NR	rs77554484-C	0.871853	6E-432		0.1314	[0.13-0.14] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1283	chr15	91509214	91509215	rs77554484	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q26.1	NR	rs77554484-A	0.1319	1E-15	(EA)	0.0741	[0.056-0.092] unit decrease	Illumina [~ 11800000] (imputed)	N
1283	chr15	91509547	91509548	rs547122663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	PRC1	rs547122663-G	0.00374399999999997	6E-14		0.14160238	[0.1-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr15	91509857	91509858	rs79383275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	PRC1	rs79383275-T	0.017697	1E-14		0.06712465	[0.05-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1283	chr15	91511259	91511260	rs12910825	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	15q26.1	PRC1	rs12910825-G	0.3612	2E-15		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1283	chr15	91511259	91511260	rs12910825	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	15q26.1	PRC1	rs12910825-G	0.360390808672187	2E-12		0.0517	[0.037-0.066] unit increase	NR [5035015] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs2290203-A	0.470590611	3E-11		0.0610759	[0.043-0.079] unit increase	Illumina [13429769] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q26.1		rs2290203-A	0.474262158	6E-11		0.064399175	[0.045-0.084] unit increase	Illumina [13134967] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q26.1	NR	rs2290203-G	0.526	2E-10		0.0559	[0.039-0.073] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	15q26.1	NR	rs2290203-G	0.7977	2E-22		0.0557	[0.045-0.067] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q26.1	NR	rs2290203-G	0.6998	2E-31		0.0506	[0.042-0.059] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	15q26.1		rs2290203-A	0.47043929	3E-10		1.0533636	[1.036497938-1.070503529]	Illumina [8919992] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	15q26.1		rs2290203-G	NR	2E-19		1.06	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	15q26.1	PRC1	rs2290203-A	0.47	2E-10		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	15q26.1	PRC1	rs2290203-G	0.79	8E-10		1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1283	chr15	91512066	91512067	rs2290203	25038754	Cai Q	2014-07-20	Nat Genet	Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.	Breast cancer	2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls	5,029 Chinese ancestry cases, 5,302 Chinese ancestry controls, 6,066 Korean ancestry cases, 8,003 Korean ancestry controls, 6,572 Japanese ancestry cases, 6,539 Japanese ancestry controls, 16,003 European ancestry cases, 41,335 European ancestry controls	15q26.1	PRC1	rs2290203-G	0.504	4E-8	(East Asian)	1.08	[1.05-1.11]	Affymetrix [up to 1930412] (imputed)	N
1283	chr15	91512266	91512267	rs2290202	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	15q26.1		rs2290202-T	NR	4E-14		0.12	[0.081-0.159] unit increase	Illumina [76131582]	N
1283	chr15	91512266	91512267	rs2290202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	PRC1, PRC1-AS1	rs2290202-T	0.129287	1E-183		0.116811916	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr15	91512266	91512267	rs2290202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	15q26.1	PRC1, PRC1-AS1	rs2290202-T	0.128824	6E-35		0.04160258	[0.035-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr15	91512266	91512267	rs2290202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs2290202-G	0.867315	1E-54				Affymetrix, Illumina [17210439] (imputed)	N
1283	chr15	91512266	91512267	rs2290202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	15q26.1	NR	rs2290202-G	0.870613	2E-54		0.044777	[0.039-0.05] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1283	chr15	91516576	91516577	rs540970650	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q26.1	NR	rs540970650-?	NR	6E-6		4.539	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1283	chr15	91520130	91520131	rs12595025	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	15q26.1	PRC1, PRC1-AS1	rs12595025-T	0.1292	1E-19		0.04882719	[0.038-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1283	chr15	91521336	91521337	rs8042680	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q26.1	PRC1	rs8042680-A	0.331	6E-9	(EA)	0.0627	[0.042-0.084] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr15	91521336	91521337	rs8042680	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	15q26.1	PRC1	rs8042680-A	0.331	2E-9		0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1283	chr15	91521336	91521337	rs8042680	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	15q26.1	PRC1	rs8042680-A		2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [2426886] (imputed)	N
1283	chr15	91522252	91522253	rs8026714	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q26.1	PRC1	rs8026714-A	0.486	1E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1283	chr15	91523035	91523036	rs6496742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs6496742-T	NR	6E-18		0.0582	[0.045-0.071] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1283	chr15	91523762	91523763	rs28584391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.1	NR	rs28584391-G	0.143766	7E-405				Affymetrix, Illumina [22063850] (imputed)	N
1283	chr15	91530157	91530158	rs11853073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	15q26.1		rs11853073-C	NR	7E-14		0.0599	[0.044-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1283	chr15	91531351	91531352	rs3803563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	15q26.1		rs3803563-A	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1283	chr15	91535328	91535329	rs76119208	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q26.1		rs76119208-G	0.871	6E-11				Affymetrix [10369434] (imputed)	N
1283	chr15	91539571	91539572	rs2386584	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	15q26.1	PRC1	rs2386584-?	NR	7E-12			[NR]	NR [NR] (imputed)	N
1283	chr15	91539571	91539572	rs2386584	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	15q26.1	PRC1	rs2386584-T	0.3835	3E-11		0.0166	[0.012-0.021] unit decrease	NR [NR]	N
1283	chr15	91544075	91544076	rs12899811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.1	VPS33B	rs12899811-G	0.304128	6E-16		0.023867931	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1283	chr15	91544075	91544076	rs12899811	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	15q26.1	PRC1	rs12899811-G	0.3	6E-7		1.09	[1.04-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
1283	chr15	91544075	91544076	rs12899811	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	15q26.1	PRC1	rs12899811-G	NR	8E-8	(men)	1.09	[1.05-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1283	chr15	91544075	91544076	rs12899811	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	15q26.1	PRC1	rs12899811-G	0.309688680465307	6E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1283	chr15	91546496	91546497	rs4244883	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	15q26.1	NR	rs4244883-C	NR	6E-6		0.009464	[0.0054-0.0135] unit decrease	Illumina [~ 540852]	N
1283	chr15	91557070	91557071	rs199921354	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q26.1	VPS33B	rs199921354-T	0.988	3E-29		33.333336		Illumina [up to 244000]	N
1283	chr15	91557070	91557071	rs199921354	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q26.1	VPS33B	rs199921354-C		2E-25		100.0		Illumina [31245]	N
1283	chr15	91557070	91557071	rs199921354	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	15q26.1	VPS33B	rs199921354-C	0.988	5E-7		1.8181818		Illumina [31276]	N
1283	chr15	91557070	91557071	rs199921354	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	15q26.1	VPS33B	rs199921354-C	0.988	8E-8		4.347826		Illumina [31514]	N
1283	chr15	91557070	91557071	rs199921354	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	15q26.1	VPS33B	rs199921354-C	0.088	6E-9		14.285714		Illumina [31245]	N
1283	chr15	91573503	91573504	rs17515485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.1		rs17515485-?	NR	9E-37				NR [~ 8900000] (imputed)	N
1283	chr15	91582256	91582257	rs4331318	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	15q26.1		rs4331318-C	0.948	2E-6		0.853	[0.799-0.909]	Affymetrix, Illumina [NR] (imputed)	N
1283	chr15	91597782	91597783	rs72761402	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,393 European ancestry girls	NA	15q26.1	NR	rs72761402-G	0.42	9E-7		394.44	[237.56-551.32] unit increase	Illumina [27449291] (imputed)	N
1283	chr15	91614479	91614480	rs11636210	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	15q26.1	LOC101926911, SV2B	rs11636210-C	0.433858	3E-6		0.343281	[0.2-0.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1284	chr15	91663115	91663116	rs2597908	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.1	SV2B	rs2597908-?	NR	9E-6	(gentisic acid)	1.4283651	[0.8-2.06] unit increase	Affymetrix [at least 2500000] (imputed)	N
1284	chr15	91664326	91664327	rs16945236	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to phenytoin in focal epilepsy	71 European ancestry cases, 218 European ancestry controls	NA			rs16945236-?	NR	8E-7				Illumina [NR] (imputed)	N
1284	chr15	91677556	91677557	rs1003759	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		15q26.1	SV2B	rs1003759-C	0.133	5E-7		0.596	[0.37-0.82] unit increase	Illumina [640625] (imputed)	N
1284	chr15	91677556	91677557	rs1003759	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		15q26.1	SV2B	rs1003759-C	0.133173	7E-7		0.588105	[0.36-0.82] unit increase	Illumina [640625] (imputed)	N
1284	chr15	91717351	91717352	rs886144	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	15q26.1	SV2B	rs886144-?	0.38	2E-7	(SM)			Affymetrix [187454]	N
1284	chr15	91741295	91741296	rs139921868	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	15q26.1	SV2B	rs139921868-C	0.014	7E-7		6.56	[3.13-13.78]	Illumina [7206774] (imputed)	N
1284	chr15	91742668	91742669	rs2285528	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	15q26.1	NR	rs2285528-?	NR	6E-6		0.0772148	[0.044-0.111] unit decrease	NR [13958389] (imputed)	N
1285	chr15	91814119	91814120	rs113042278	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	15q26.1	SV2B	rs113042278-T	NR	7E-6		0.632651	[0.36-0.91] unit decrease	Illumina [at least 950000] (imputed)	N
1285	chr15	91816342	91816343	rs61680841	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	15q26.1	SV2B	rs61680841-?		6E-6	(PC2)	0.0964	[NR] unit decrease	Illumina [4167292] (imputed)	N
1285	chr15	91838741	91838742	rs117940599	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q26.1	NR	rs117940599-?	NR	9E-6		4.429	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1286	chr15	91886850	91886851	rs72750241	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.1	NR	rs72750241-A	0.01394	1E-8	(CYP3A5)	0.106	NR unit increase	Illumina [1671387] (imputed)	N
1286	chr15	91944182	91944183	rs4611433	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	15q26.1	LOC100128403, LOC441732	rs4611433-?	NR	4E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1287	chr15	92060773	92060774	rs74407346	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	15q26.1	SV2B, SLCO3A1	rs74407346-T	0.01	2E-6		1.97	[1.49-2.61]	Affymetrix, Illumina [7891602] (imputed)	N
1287	chr15	92083294	92083295	rs10852151	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	15q26.1	SLCO3A1, CRTC3, RP11-387D10.2	rs10852151-A	0.57	2E-7				Illumina [2327020] (imputed)	N
1287	chr15	92136976	92136977	rs4404050	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	15q26.1	intergenic	rs4404050-T	0.33	6E-6		1.31	[1.17-1.47	Affymetrix [7515136] (imputed)	N
1288	chr15	92176276	92176277	rs4932564	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	15q26.1	NR	rs4932564-?	NR	5E-8			[NR]	NR [1665663]	N
1288	chr15	92211773	92211774	rs7164176	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	15q26.1	intergenic	rs7164176-?	0.43	5E-7	(CHAQ, RF-)	0.28	[NR] unit decrease	Illumina [534053]	N
1288	chr15	92251557	92251558	rs12904129	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	15q26.1	intergenic	rs12904129-?	NR	2E-6		0.008	[0.0047-0.0113] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1289	chr15	92308668	92308669	rs569217880	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	15q26.1	CTD-2343P13.1	rs569217880-T	0.0033	7E-6		1.8389	[1.04-2.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1289	chr15	92378016	92378017	rs79298927	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	15q26.1	NR	rs79298927-?	NR	5E-6		7.142857	[NR]	Illumina [5326313] (imputed)	N
1290	chr15	92445872	92445873	rs3924426	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	15q26.1	SLCO3A1	rs3924426-T	NR	2E-6				Affymetrix [339272]	N
1290	chr15	92446682	92446683	rs4327025	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Intestinibacter id.11345)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	15q26.1		rs4327025-G	NR	2E-7		5.235739	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1290	chr15	92467321	92467322	rs6496869	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q26.1	NR	rs6496869-?	NR	5E-6		4.583	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1291	chr15	92542830	92542831	rs8037790	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	15q26.1	SLCO3A1	rs8037790-A	0.2296	5E-6	(Case/control)	0.4495	[0.26-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1291	chr15	92542830	92542831	rs8037790	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	15q26.1	SLCO3A1	rs8037790-A	0.23	7E-6	(Complete)	0.443	[0.25-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1291	chr15	92552028	92552029	rs7495052	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	15q26.1	SLCO3A1	rs7495052-?	NR	3E-6	(binary)			Perlegen [429981]	N
1291	chr15	92566413	92566414	rs6496888	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	15q26.1	NR	rs6496888-A	NR	1E-6		13.59	[NR]	Illumina [NR] (imputed)	N
1291	chr15	92570920	92570921	rs12101393	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q26.1	NA	rs12101393-C	0.7865	1E-10		0.014	[0.0097-0.0183] unit increase	NR [~ 27400000] (imputed)	N
1291	chr15	92573638	92573639	rs7498044	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q26.1	SLCO3A1	rs7498044-G	0.782638	3E-9		0.00995173	[0.0067-0.0132] unit increase	Affymetrix [12370749]	N
1291	chr15	92573638	92573639	rs7498044	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.1	NR	rs7498044-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1291	chr15	92573638	92573639	rs7498044	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q26.1	NA	rs7498044-A	0.2134	5E-12		0.0163	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1291	chr15	92574061	92574062	rs58431213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.1		rs58431213-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1291	chr15	92574214	92574214	rs543844847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q26.1		rs543844847-AGCAGCCAACCATCTG	NR	2E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1291	chr15	92581289	92581290	rs1568209	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	15q26.1		rs1568209-A	NR	2E-7		2.61	[1.65-4.15]	Illumina [NR] (imputed)	N
1291	chr15	92595792	92595793	rs28660218	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	15q26.1	NR	rs28660218-C	0.989895	1E-6		0.305	[0.18-0.43] unit decrease	NR [9260588] (imputed)	N
1291	chr15	92595792	92595793	rs28660218	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	15q26.1	NR	rs28660218-C	0.989895	3E-6		0.384	[0.22-0.54] unit increase	NR [9260588] (imputed)	N
1291	chr15	92626514	92626515	rs147415896	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q26.1	SLCO3A1	rs147415896-C	0.994	5E-6	(AA)	0.137	unit increase	Illumina [NR] (imputed)	N
1291	chr15	92650279	92650280	rs140011970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	15q26.1	SLCO3A1	rs140011970-G	0.993	4E-6	(AA)	0.117	unit increase	Illumina [NR] (imputed)	N
1291	chr15	92657372	92657373	rs207954	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	15q26.1	SLCO3A1	rs207954-C	0.72	1E-6	(ETV6-RUNX1 positive)	1.25	[1.08-1.43]	Affymetrix [355750]	N
1292	chr15	92685365	92685366	rs2238357	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Estimated glomerular filtration rate reduction (30%)	up to 3,617 Korean ancestry individuals	NA	15q26.1	SLCO3A1	rs2238357-?	NR	3E-6		1.456	[NR]	Affymetrix [up to 1590162] (imputed)	N
1292	chr15	92685777	92685778	rs2238355	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	SLCO3A1	rs2238355-A	0.435	8E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1292	chr15	92688980	92688981	rs886914	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Estimated glomerular filtration rate reduction (30%)	up to 3,617 Korean ancestry individuals	NA	15q26.1	SLCO3A1	rs886914-?	NR	2E-6		1.453	[NR]	Affymetrix [up to 1590162] (imputed)	N
1292	chr15	92689694	92689695	rs2074886	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Estimated glomerular filtration rate reduction (30%)	up to 3,617 Korean ancestry individuals	NA	15q26.1	SLCO3A1	rs2074886-?	NR	2E-6		1.45	[NR]	Affymetrix [up to 1590162] (imputed)	N
1292	chr15	92702019	92702020	rs873122	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q26.1	SLCO3A1	rs873122-C	0.7199	2E-11		0.1147	[0.081-0.148] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1292	chr15	92705030	92705031	rs2238341	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	15q26.1	NR	rs2238341-G	0.239	5E-6		0.145	[0.082-0.208] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1292	chr15	92724187	92724187	rs558812134	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	15q26.1		rs558812134-?	NR	2E-8				NR [9705931] (imputed)	N
1292	chr15	92731658	92731659	rs11074046	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q26.1	NR	rs11074046-?	NR	2E-6	(Japanese)	0.4693	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1292	chr15	92737554	92737555	rs8031462	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional alcohol use interaction (1df)	419 European ancestry exposed trios, 681 European ancestry unexposed trios, 40 Asian ancestry exposed trios, 1,213 Asian ancestry unexposed trios, 103 Latin American exposed trios, 407 Latin American unexposed trios	NA	15q26.1	SLCO3A1	rs8031462-C	NR	4E-7		1.804	[1.436-2.267]	Illumina [up to 6762077] (imputed)	N
1292	chr15	92761086	92761087	rs34192341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q26.1		rs34192341-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1292	chr15	92774820	92774821	rs117071520	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	15q26.1	NR	rs117071520-?	NR	7E-6		1.0445	[0.51-1.58] unit decrease	Illumina [at least 560000] (imputed)	N
1293	chr15	92806290	92806291	rs4304977	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	15q26.1	SLCO3A1, ST8SIA1	rs4304977-A	0.46	5E-6	(IGF2-DMR)			Illumina [515966]	N
1293	chr15	92814602	92814603	rs4777900	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	15q26.1	NR	rs4777900-?	NR	5E-7	(genus_Olsenella)	0.7442648	[0.47-1.02] unit decrease	Affymetrix [210924]	N
1293	chr15	92824926	92824927	rs11074058	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q26.1	DUXAP6	rs11074058-?		3E-6				Illumina [4322238] (imputed)	N
1293	chr15	92858100	92858101	rs12912184	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	15q26.1	ST8SIA2, SLCO3A1	rs12912184-?		9E-8	(females)			Illumina [1211988] (imputed)	N
1293	chr15	92859880	92859881	rs1871438	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	15q26.1	NPM1P5, ST8SIA2	rs1871438-?	0.51-0.56	8E-7	(Red meat)	1.11	[1.07-1.16]	Affymetrix, Illumina [> 2700000] (imputed)	N
1293	chr15	92883839	92883840	rs12905014	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	15q26.1	ST8SIA2	rs12905014-?	0.05	4E-7	(FEV1 65%)	1.7544	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1293	chr15	92922096	92922097	rs77271627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aplastic anemia	53 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	15q26.1		rs77271627-C	0.02975221	1E-8		4.9540873	[3.25-6.66] unit increase	Illumina [13429217] (imputed)	N
1294	chr15	92930410	92930411	rs17702901	23643386	Hatoum IJ	2013-05-02	Am J Hum Genet	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	15q26.1	ST8SIA2	rs17702901-A	NR	7E-8		6.64	[4.23-9.05] unit decrease	Illumina [1943170] (imputed)	N
1294	chr15	92944460	92944461	rs67607760	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ST8SIA2	rs67607760-?	NR	3E-9	(female)	1.67811	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1294	chr15	92995640	92995641	rs1352323	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	15q26.1	ST8SIA2	rs1352323-?	NR	7E-7	(Latino)	1.47	[1.32-1.63]	Affymetrix, Illumina [NR] (imputed)	N
1294	chr15	92995640	92995641	rs1352323	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	15q26.1	ST8SIA2	rs1352323-?	NR	1E-7		1.33	[1.23-1.44]	Affymetrix, Illumina [NR] (imputed)	N
1294	chr15	93006739	93006740	rs4777989	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	15q26.1	ST8SIA2, C15orf32, ENO1P2, FAM174B	rs4777989-A	NR	4E-6	(sleep efficiency, weekdays)	1.84	[1.06-2.62] unit increase	Affymetrix [7141204] (imputed)	N
1294	chr15	93007973	93007974	rs2290492	29170203	Alonso N	2017-11-23	Ann Rheum Dis	Identification of a novel locus on chromosome 2q13, which predisposes to clinical vertebral fractures independently of bone density.	Fractures (vertebral)	1,553 European ancestry cases, 4,340 European ancestry controls	694 European ancestry cases, 2,105 European ancestry controls, 334 cases, 1,657 controls	15q26.1	NR	rs2290492-A	0.23	3E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [2366456] (imputed)	N
1294	chr15	93044338	93044339	rs8040009	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	15q26.1	C15orf32	rs8040009-T	0.21	3E-7		0.123	[NR] unit decrease	Illumina [~ 300000]	N
1294	chr15	93044338	93044339	rs8040009	20386566	Lee MT	2010-04-13	Mol Psychiatry	Genome-wide association study of bipolar I disorder in the Han Chinese population.	Bipolar I disorder	1,000 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	409 Han Chinese ancestry cases, 1,000 Han Chinese ancestry controls	15q26.1	ST8SIA2, C15orf32	rs8040009-C	0.11	6E-6		1.4	[1.21-1.61]	Illumina [516919]	N
1294	chr15	93046635	93046636	rs11635085	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	15q26.1	C15orf32	rs11635085-G	0.107	6E-7	(Casein)	0.3	[NR] unit decrease	Illumina [944565] (imputed)	N
1294	chr15	93050965	93050966	rs1455782	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	15q26.1	FLJ32831	rs1455782-?	NR	4E-6	(ppFVC)			Affymetrix [70897]	N
1295	chr15	93061238	93061239	rs11631071	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	15q26.1		rs11631071-?	NR	9E-6		0.32	[0.18-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1295	chr15	93066440	93066441	rs12148722	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	15q26.1	NR	rs12148722-?	NR	2E-6		0.07593422	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1295	chr15	93071763	93071764	rs7166289	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.1	ST8SIA2	rs7166289-?	NR	4E-7	(guanosine diphosphate)	0.26391596	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1295	chr15	93111128	93111129	rs28510890	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	15q26.1	LINC00930	rs28510890-G	0.767994658	8E-6		1.0823249	[1.05-1.12]	Illumina [10439017] (imputed)	N
1295	chr15	93126003	93126004	rs285712	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	15q26.1	NR	rs285712-?	NR	5E-8	(Acidaminococcus)	0.481	[0.31-0.65] unit decrease	Illumina [5293637] (imputed)	N
1295	chr15	93131631	93131632	rs2173063	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	15q26.1	LOC400451	rs2173063-A	0.06	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1295	chr15	93179174	93179175	rs285757	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	15q26.1	FAM174B	rs285757-?	0.15	7E-6				Illumina [~ 800000]	N
1296	chr15	93218097	93218098	rs35156457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.1		rs35156457-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1296	chr15	93280490	93280491	rs62020769	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.1	FAM174B	rs62020769-T	0.4871	2E-10		0.1738	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1296	chr15	93280490	93280491	rs62020769	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.1	FAM174B	rs62020769-T	0.4898	9E-10		0.1209	[0.082-0.16] mmHg decrease	Affymetrix [NR] (imputed)	N
1297	chr15	93429645	93429646	rs1439620	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q26.1	NR	rs1439620-A	NR	2E-6		0.008	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1297	chr15	93429645	93429646	rs1439620	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q26.1	LOC100507217	rs1439620-A	0.333	1E-6		0.015	[0.0091-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1297	chr15	93429645	93429646	rs1439620	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q26.1	LOC100507217	rs1439620-A	0.33	2E-6	(EA)	0.016	[0.0093-0.0223] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1297	chr15	93434965	93434966	rs144998313	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	15q26.1	NR	rs144998313-A	0.9874	4E-7		0.07706349	[0.047-0.107] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1297	chr15	93435224	93435225	rs2304655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs2304655-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1297	chr15	93436488	93436489	rs12900342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q26.1		rs12900342-A	NR	4E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1297	chr15	93439223	93439224	rs8024067	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	15q26.1	LINC01578	rs8024067-T	0.158	8E-9	(Japanese)	0.034	[0.022-0.046] unit decrease	Illumina [5864938] (imputed)	N
1297	chr15	93448221	93448222	rs7179364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q26.1		rs7179364-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1297	chr15	93452845	93452846	rs11856160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	15q26.1		rs11856160-A	NR	2E-9		0.0177	[0.012-0.023] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1298	chr15	93456068	93456069	rs4778058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q26.1		rs4778058-T	0.4964	5E-11		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1298	chr15	93456068	93456069	rs4778058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q26.1	Intergenic	rs4778058-T	0.4964	4E-13	(MTAG)	0.0095	[0.007-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr15	93459452	93459453	rs62023121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q26.1		rs62023121-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1298	chr15	93459452	93459453	rs62023121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q26.1	Intergenic	rs62023121-T	0.1511	3E-16	(MTAG)	0.0188	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr15	93468275	93468276	rs11632112	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	15q26.1	CHD2	rs11632112-C	0.2402	9E-12		0.1645	[0.12-0.21] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1298	chr15	93468275	93468276	rs11632112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	15q26.1	Intergenic	rs11632112-C	0.2417	1E-8		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1298	chr15	93480462	93480463	rs78177980	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	15q26.1	NR	rs78177980-G	NR	8E-6		1.1235955	[NR]	Illumina [7158791] (imputed)	N
1298	chr15	93505791	93505792	rs570601144	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q26.1	NR	rs570601144-?	NR	9E-6		4.431	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1298	chr15	93509966	93509967	rs12905312	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	15q26.1		rs12905312-C	0.1942	1E-5		0.7286	[0.6333-0.8382]	Affymetrix [7975321] (imputed)	N
1298	chr15	93510242	93510243	rs10152428	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	15q26.1	CHD2	rs10152428-C		1E-7		0.0052	[0.0032-0.0072] unit increase	Affymetrix [13304133] (imputed)	N
1298	chr15	93510242	93510243	rs10152428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	15q26.1	CHD2	rs10152428-C	0.7297	8E-12		0.0147614	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr15	93510242	93510243	rs10152428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	15q26.1	NR	rs10152428-C	0.728208	1E-11		0.013986	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1298	chr15	93516426	93516427	rs12594991	34011927	Park JH	2021-05-19	Transl Psychiatry	Novel Alzheimer's disease risk variants identified based on whole-genome sequencing of APOE ?4 carriers.	Alzheimer's disease in APOE e4+ carriers	331 Korean ancestry cases, 169 Korean ancestry controls	190 Korean ancestry cases, 97 Korean ancestry controls			rs12594991-?	NR	2E-7		2.21	[1.64-2.97]	Illumina [22526987]	N
1298	chr15	93517105	93517106	rs62023145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q26.1	Intergenic	rs62023145-T	0.8445	5E-17	(MTAG)	0.0207	[0.016-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr15	93517105	93517106	rs62023145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q26.1	Intergenic	rs62023145-T	0.8445	1E-14		0.0208	[0.016-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1298	chr15	93517105	93517106	rs62023145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q26.1	Intergenic	rs62023145-T	0.8391	3E-10	(MTAG)	0.0196	[0.014-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1298	chr15	93522311	93522312	rs2272461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q26.1		rs2272461-A	0.6822	2E-8	(conditional-joint)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1298	chr15	93530846	93530847	rs34625310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q26.1	NR	rs34625310-G	NR	1E-9		0.0171	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1298	chr15	93559177	93559178	rs7170644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	15q26.1		rs7170644-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1298	chr15	93564971	93564972	rs7179432	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q26.1	NR	rs7179432-C	0.455903207978485	4E-6	(IGP51)	0.1569	[0.09-0.224] unit decrease	Illumina [~ 2500000] (imputed)	N
1298	chr15	93567526	93567527	rs12905032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	15q26.1		rs12905032-T	NR	9E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1298	chr15	93567526	93567527	rs12905032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	15q26.1		rs12905032-T	NR	2E-8		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1298	chr15	93567526	93567527	rs12905032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	15q26.1	CHD2	rs12905032-T	0.268336	2E-11		0.016750222	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr15	93567863	93567864	rs12906163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	15q26.1	CHD2	rs12906163-C	0.398825	3E-10		0.014445016	[0.01-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1298	chr15	93568883	93568884	rs9672839	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q26.1	NR	rs9672839-C	0.395122	7E-9		0.00519374	[0.0035-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
1298	chr15	93568883	93568884	rs9672839	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q26.1	NR	rs9672839-C	0.395122	4E-7		0.00538082	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
1298	chr15	93570785	93570786	rs1044778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q26.1		rs1044778-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1298	chr15	93575941	93575942	rs183587781	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	15q26.1	NR	rs183587781-T	0.01	4E-6		1.1904762	[-0.92632-3.30728]	Affymetrix [at least 143006] (imputed)	N
1298	chr15	93584421	93584422	rs4778075	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q26.1	RGMA	rs4778075-C	0.79978	6E-10		0.0143847	[0.0098-0.0189] unit decrease	NR [13737936] (imputed)	N
1299	chr15	93588263	93588264	rs4299103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q26.1		rs4299103-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1299	chr15	93588263	93588264	rs4299103	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q26.1		rs4299103-?	NR	3E-12		0.0160674	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1299	chr15	93604504	93604505	rs4778087	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	15q26.1	RGMA	rs4778087-?	NR	2E-9		0.002877	[0.00094-0.00482] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1299	chr15	93609459	93609460	rs11074135	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	15q26.1	RGMA	rs11074135-A	0.654375	2E-10	(RGMA, 5483_1_3)	0.16240214	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1299	chr15	93610186	93610187	rs4778093	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RGMA	5,352 Icelandic ancestry individuals	NA	15q26.1		rs4778093-C	0.312	2E-17		0.161503	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1299	chr15	93616013	93616014	rs3752102	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	15q26.1	RGMA	rs3752102-A	0.473	3E-16	(Repulsive guidance molecule A, RGMA.5483.1.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1299	chr15	93638400	93638401	rs7168353	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	15q26.1	RGMA	rs7168353-C	NR	1E-6	(AA)			Affymetrix [~ 2300000] (imputed)	N
1299	chr15	93673738	93673739	rs4778107	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	15q26.1	Intergenic	rs4778107-?		4E-6				Illumina [301908]	N
1299	chr15	93699189	93699190	rs6497029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.1	NR	rs6497029-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1299	chr15	93713665	93713666	rs6497031	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	15q26.1	RGMA	rs6497031-A	0.17	5E-6	(Age 20-60 years)	1.84	[1.41 - 2.39]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1300	chr15	93718500	93718501	rs190726239	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q26.1	NR	rs190726239-?	NR	1E-8				Illumina [7760689] (imputed)	N
1300	chr15	93744203	93744204	rs4502168	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q26.1	SLCO3A1, RGMA	rs4502168-?		6E-12				Affymetrix, Illumina [NR] (imputed)	N
1300	chr15	93746003	93746004	rs12916315	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	15q26.1	Intergenic	rs12916315-G	0.055	3E-6		1.3327	[0.77-1.89] unit increase	Illumina [9520174] (imputed)	N
1300	chr15	93747984	93747985	rs12442183	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	15q26.1	RGMA	rs12442183-T	0.59	3E-8				Illumina [at least 4700000] (imputed)	N
1300	chr15	93747984	93747985	rs12442183	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	15q26.1	RGMA	rs12442183-T	0.59	1E-8	(EA)	0.44	unit increase	Illumina [at least 4700000] (imputed)	N
1300	chr15	93752454	93752455	rs8036747	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	15q26.1	NR	rs8036747-?	NR	8E-8	(EA)	0.39	unit increase	Illumina [at least 4700000] (imputed)	N
1300	chr15	93752877	93752878	rs1872052	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	15q26.1	NR	rs1872052-?	NR	2E-7	(EA)	0.37	unit decrease	Illumina [at least 4700000] (imputed)	N
1300	chr15	93766784	93766785	rs72752223	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	15q26.1	NR	rs72752223-G	0.113	9E-6	(Males)	0.388216	[0.22-0.56] unit increase	Illumina [~ 6600000] (imputed)	N
1300	chr15	93766784	93766785	rs72752223	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	15q26.1	NR	rs72752223-G	0.113	1E-6	(Males)	0.399687	[0.24-0.56] unit increase	Illumina [~ 6600000] (imputed)	N
1300	chr15	93796402	93796403	rs111837951	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q26.1	intergenic	rs111837951-A	NR	6E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1300	chr15	93796402	93796403	rs111837951	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	15q26.1	intergenic	rs111837951-A	NR	6E-6				Illumina [up to 11995908] (imputed)	N
1300	chr15	93815128	93815129	rs17612678	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.1	UNQ9370	rs17612678-G	0.275	5E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1300	chr15	93825383	93825384	rs61021634	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q26.1	RGMA	rs61021634-A	0.438	1E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1300	chr15	93832066	93832067	rs7167984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs7167984-A	NR	3E-8		0.1262	[0.082-0.171] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
1300	chr15	93834742	93834743	rs12441261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	15q26.1		rs12441261-A	NR	5E-9		0.0435	[0.029-0.058] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1300	chr15	93840262	93840263	rs4777825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs4777825-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1301	chr15	93849242	93849243	rs62042908	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	15q26.1	NR	rs62042908-?	NR	1E-6		2.56	NR	Affymetrix [~ 18000000] (imputed)	N
1301	chr15	93865044	93865045	rs7166776	34733494	Nakamura Y	2021-10-11	J Nutr Sci	A genome-wide association study on meat consumption in a Japanese population: the Japan Multi-Institutional Collaborative Cohort study.	Meat consumption	7,744 Japanese ancestry females	NA	15q26.1		rs7166776-C	0.508	6E-8		1.291	[0.83-1.76] unit decrease	Illumina [8503383] (imputed)	N
1301	chr15	93877424	93877425	rs4777845	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	15q26.1	NR	rs4777845-T	NR	9E-6		0.064	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1301	chr15	93889458	93889459	rs17541406	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	15q26.1	MCTP2, SEPHS1P2	rs17541406-?	NR	1E-6				NR [up to 8466825] (imputed)	N
1301	chr15	93900937	93900938	rs735912	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	342 European and unknown ancestry genotoxic compound-exposed cases, 265 European and unknown ancestry genotoxic compound-exposed controls,255 European and unknown ancestry unexposed cases, 611 European and unknown ancestry unexposed controls	NA	15q26.1	NR	rs735912-?	NR	8E-6		1.5625	[NR]	Illumina [> 2600000] (imputed)	N
1301	chr15	93903596	93903597	rs936674	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	15q26.1	RP11-266O8.1	rs936674-?	NR	5E-6		1.36	[0.77-1.95] unit decrease	Illumina [1075436] (imputed)	N
1301	chr15	93910219	93910220	rs7168070	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	15q26.1	NR	rs7168070-T	0.329	6E-7		0.11	[0.071-0.149] unit increase	Illumina [~ 8400000] (imputed)	N
1301	chr15	93914450	93914451	rs148024591	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	15q26.1	RP11-266O8.1	rs148024591-T	0.017	7E-8	(Hispanic, males)	0.117	[0.074-0.16] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1301	chr15	93925326	93925327	rs4777857	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q26.1	NR	rs4777857-G	0.4391	5E-11		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1301	chr15	93955067	93955068	rs1906727	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	15q26.1		rs1906727-C	NR	7E-6	(GLM)	1.086	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1301	chr15	93955067	93955068	rs1906727	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	15q26.1		rs1906727-C	NR	8E-6	(GLM)	3.2907	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1302	chr15	93986093	93986094	rs11635353	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.1	CHD2	rs11635353-?	NR	7E-6	(SM 16:0)	0.33093184	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1302	chr15	93986093	93986094	rs11635353	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.1	CHD2	rs11635353-?	NR	2E-6	(LPC 18:1)	0.34750727	[0.21-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1302	chr15	94009086	94009087	rs73462326	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.1	NR	rs73462326-G	0.02962	9E-9	(C4B)	0.4276	NR unit increase	Illumina [1671387] (imputed)	N
1302	chr15	94014196	94014197	rs12050567	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	15q26.1	CHD2	rs12050567-?		1E-6		1.1904762	[1.11-1.28]	Affymetrix, Illumina [3493832] (imputed)	N
1302	chr15	94023131	94023132	rs8024294	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	15q26.1	NA	rs8024294-A	0.1115	4E-10		0.0177	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
1302	chr15	94026693	94026694	rs8036549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.1		rs8036549-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1302	chr15	94029152	94029153	rs8030277	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q26.1	NR	rs8030277-T	0.32	1E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix [2446094] (imputed)	N
1302	chr15	94029152	94029153	rs8030277	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q26.1	NR	rs8030277-T	0.32	5E-8				Affymetrix [2446094] (imputed)	N
1302	chr15	94029477	94029478	rs2388298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q26.1	NR	rs2388298-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1302	chr15	94034904	94034905	rs16948107	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	15q26.1		rs16948107-G	NR	1E-5		2.718	[1.52-3.91] unit increase	NR [534934]	N
1302	chr15	94036687	94036688	rs7175404	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	15q26.1	AK094352	rs7175404-?	NR	6E-7				Affymetrix [504219]	N
1302	chr15	94040705	94040706	rs72649546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	15q26.1		rs72649546-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1302	chr15	94050204	94050205	rs74379684	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.1	AC091078.1	rs74379684-T	0.0751	4E-14		0.0272	[0.02-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
1302	chr15	94095283	94095284	rs144344911	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC091078.1	rs144344911-?	NR	5E-11	(female)	0.59647	[NR] unit increase	Affymetrix [NR] (imputed)	N
1303	chr15	94141832	94141833	rs12437854	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	15q26.1	MCTP2, RGMA	rs12437854-G	0.04	2E-9	(ESRD vs. non-ESRD)	1.8	[1.48-2.17]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1303	chr15	94149784	94149785	rs7175566	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	15q26.1	Intergenic	rs7175566-T	0.65	9E-6				Illumina [2327020] (imputed)	N
1303	chr15	94171112	94171113	rs112845369	31579629	Fiorica PN	2019-09-26	PeerJ	Transcriptome association studies of neuropsychiatric traits in African Americans implicate PRMT7 in schizophrenia.	Schizophrenia	969 African American cases, 1,287 African American controls	NA	15q26.1	NR	rs112845369-?	NR	1E-6				Affymetrix [12780487] (imputed)	N
1303	chr15	94225515	94225516	rs6497102	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q26.1	NR	rs6497102-?		2E-6				Illumina [4322238] (imputed)	N
1303	chr15	94235320	94235321	rs56149704	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.1	NR	rs56149704-T	0.04355	3E-8	(PSMC5)	0.02027	NR unit decrease	Illumina [1671387] (imputed)	N
1303	chr15	94235320	94235321	rs56149704	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.1	NR	rs56149704-T	0.04355	1E-8	(GCLM)	0.005609	NR unit decrease	Illumina [1671387] (imputed)	N
1304	chr15	94271227	94271228	rs7173064	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	15q26.1	MCTP2	rs7173064-C	0.47	4E-7	(AA)			Affymetrix, Illumina [14227402] (imputed)	N
1304	chr15	94298238	94298239	rs4777948	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	15q26.1		rs4777948-?	NR	3E-10		0.046	[0.032-0.06] unit increase	Affymetrix [9906178] (imputed)	N
1304	chr15	94298238	94298239	rs4777948	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	15q26.1		rs4777948-?	NR	5E-8		0.034	[0.022-0.046] unit decrease	Affymetrix [9906178] (imputed)	N
1304	chr15	94298238	94298239	rs4777948	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	15q26.1		rs4777948-?	NR	3E-6		0.041	[0.023-0.059] unit increase	Affymetrix [9906178] (imputed)	N
1304	chr15	94341486	94341487	rs186706570	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	15q26.1	NR	rs186706570-C	NR	4E-7	(GEE model)	1.0482	[0.64-1.45] unit decrease	NR [NR] (imputed)	N
1304	chr15	94349451	94349452	rs7168430	31417607	Gazal S	2019-07-30	Front Genet	The Genetic Architecture of Chronic Mountain Sickness in Peru.	Chronic mountain sickness	166 Quechua cases, 146 Quechua controls	NA	15q26.2	RGM1, MCTP2	rs7168430-G		6E-6		2.23	[1.57-3.24]	Affymetrix [1288199]	N
1306	chr15	94551606	94551607	rs7181724	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.2		rs7181724-G	NR	2E-21		0.0127	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1306	chr15	94551606	94551607	rs7181724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs7181724-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1306	chr15	94551606	94551607	rs7181724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q26.2		rs7181724-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1306	chr15	94551606	94551607	rs7181724	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q26.2		rs7181724-?	NR	2E-13		0.0147251	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1306	chr15	94552988	94552989	rs6497154	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.2	LINC01581, LINC01579	rs6497154-T	0.4107	5E-6		0.0297	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1306	chr15	94553224	94553225	rs28405309	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q26.2	LINC01581	rs28405309-C	0.509966	3E-10		0.0118538	[0.0082-0.0155] unit increase	NR [13737936] (imputed)	N
1306	chr15	94558880	94558881	rs7170711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.2	CTD-3049M7.1, CTD-2643K12.3	rs7170711-G	NR	1E-8		0.0175284	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1306	chr15	94574007	94574008	rs2054507	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	15q26.2		rs2054507-A	NR	6E-6		1.6243	[0.94-2.31] unit increase	Illumina [NR] (imputed)	N
1306	chr15	94574081	94574082	rs2054508	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	15q26.2		rs2054508-?	NR	7E-9				Affymetrix [NR] (imputed)	N
1306	chr15	94581941	94581942	rs12101726	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	15q26.2	LOC400455	rs12101726-C	NR	5E-6		1.83	[1.41-2.36]	NR [7738399] (imputed)	N
1306	chr15	94581941	94581942	rs12101726	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Overweight status	531 Bangladeshi ancestry overweight females, 1,269 Bangladeshi ancestry normal weight females, 338 Bangladeshi ancestry overweight males, 1,106 Bangladeshi ancestry normal weight males	NA	15q26.2	RGMA, MCTP2	rs12101726-C	0.195	2E-7	(males)	0.101	[0.064-0.138] unit increase	Illumina [1208102] (imputed)	N
1306	chr15	94583106	94583107	rs11074247	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	15q26.2	NR	rs11074247-?	0.3323	8E-6		0.051774	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1306	chr15	94591306	94591307	rs16948671	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.2	NR	rs16948671-C	0.0122	1E-8	(CYB5A)	0.975	NR unit increase	Illumina [1671387] (imputed)	N
1306	chr15	94631471	94631472	rs11074250	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	15q26.2	CTD-2643K12.3, MCTP2	rs11074250-T	NR	6E-6	(sleep latency)	0.2511	[0.14-0.36] unit increase	Affymetrix [7141204] (imputed)	N
1307	chr15	94689652	94689653	rs2388436	21302353	Perroud N	2010-12-28	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of hoarding traits.	Hoarding	3,304 European ancestry individuals	NA	15q26.2	intergenic	rs2388436-G	0.42	6E-6		0.51	[NR] unit increase	Illumina [1517033] (imputed)	N
1307	chr15	94707072	94707073	rs12910412	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	15q26.2	MCTP2	rs12910412-G	0.46	5E-7	(EA)	1.3	[1.17-1.44]	Illumina [NR] (imputed)	N
1307	chr15	94718328	94718329	rs148229191	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on Hematopoietic Stem Cell	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	15q26.2		rs148229191-A	0.00752	2E-8		1.113	[0.73-1.5] unit decrease	Illumina [16999215] (imputed)	N
1307	chr15	94738630	94738631	rs12441824	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	15q26.2	MCTP2	rs12441824-A	0.48	2E-7		0.24	[0.15-0.33] unit decrease	Illumina [NR] (imputed)	N
1307	chr15	94747886	94747887	rs28607113	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	15q26.2	intergenic	rs28607113-T	0.964	4E-6		0.086	[0.049-0.123] unit increase	Affymetrix [7947838] (imputed)	N
1308	chr15	94770798	94770799	rs11074258	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	15q26.2	MCTP2	rs11074258-C	0.17	4E-8				Affymetrix [432921]	N
1308	chr15	94819262	94819263	rs56052861	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Mycoplasmatales abundance in stool	5,959 Finnish ancestry individuals	NA	15q26.2		rs56052861-C	0.121462	1E-8		0.0363706	[0.024-0.049] unit increase	Illumina [7980478] (imputed)	N
1308	chr15	94819262	94819263	rs56052861	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Mycoplasmataceae abundance in stool	5,959 Finnish ancestry individuals	NA	15q26.2		rs56052861-C	0.121462	3E-8		0.0428162	[0.028-0.058] unit increase	Illumina [7980478] (imputed)	N
1308	chr15	94819262	94819263	rs56052861	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Fimbriimonadia abundance in stool	5,959 Finnish ancestry individuals	NA	15q26.2		rs56052861-C	0.121462	2E-8		0.0348468	[0.023-0.047] unit decrease	Illumina [7980478] (imputed)	N
1308	chr15	94829281	94829282	rs80016369	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	15q26.2	Intergenic	rs80016369-G	NR	2E-6		0.347178	[0.2-0.49] unit decrease	Illumina [13520550] (imputed)	N
1308	chr15	94861839	94861840	rs11634227	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	15q26.2	MCTP2	rs11634227-C	0.41	1E-6		0.21	[0.13-0.29] unit decrease	Illumina [5918868] (imputed)	N
1308	chr15	94863315	94863316	rs72767442	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	15q26.2	MCTP2	rs72767442-A	0.41	2E-6		0.18	[0.1-0.26] unit decrease	Illumina [5918868] (imputed)	N
1308	chr15	94872685	94872686	rs8033195	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	15q26.2	MCTP2	rs8033195-A		5E-7		174.53	[106.73-242.33] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1309	chr15	94904734	94904735	rs34408206	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	15q26.2	MCTP2	rs34408206-G	0.31	2E-7		0.06	[0.04-0.08] unit increase	Illumina [11973598] (imputed)	N
1309	chr15	94926119	94926120	rs75100776	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	15q26.2		rs75100776-?	NR	8E-6		0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1309	chr15	94934148	94934149	rs113501776	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q26.2		rs113501776-T	0.1	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1309	chr15	94934148	94934149	rs113501776	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.2	NR	rs113501776-T	0.1116	4E-8				NR [9056863] (imputed)	N
1309	chr15	94939507	94939508	rs4984390	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	15q26.2	MCTP2	rs4984390-?	0.41	4E-6		3.27	[NR]	Illumina [866399]	N
1309	chr15	94945881	94945882	rs68179993	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q26.2		rs68179993-T	0.12	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
1309	chr15	94965409	94965410	rs72751339	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	15q26.2	MCTP2	rs72751339-T	0.02	1E-8	(CCL24)	1.52	[1.03-2.01] unit decrease	Affymetrix [629686]	N
1310	chr15	95037454	95037455	rs8041166	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	15q26.2	intergenic	rs8041166-T	0.089	9E-7		1.82	[1.11-2.53] unit increase	Illumina [622468]	N
1310	chr15	95055627	95055628	rs761815677	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	15q26.2	MCTP2	rs761815677-A	0.9986	5E-6		1.4799	[0.84-2.12] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1311	chr15	95165579	95165580	rs1014922	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	15q26.2	MCTP2	rs1014922-?	0.10	3E-6	(Recessive)	1.36	[1.20-1.55]	Affymetrix [319222]	N
1311	chr15	95240899	95240900	rs17632962	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	RGMA	rs17632962-?	NR	7E-6	(xanthurenate)	0.37686923	[0.21-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1311	chr15	95250819	95250820	rs7164271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q26.2		rs7164271-A	NR	1E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1311	chr15	95263783	95263784	rs2199721	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q26.2		rs2199721-C	NR	9E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1311	chr15	95266809	95266810	rs8036171	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	15q26.2	NA	rs8036171-A	0.3724	8E-19		0.0149	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
1311	chr15	95267482	95267483	rs7181659	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	15q26.2	NR	rs7181659-A	NR	6E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1311	chr15	95267482	95267483	rs7181659	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	15q26.2	Intergenic	rs7181659-A	0.510322879466283	4E-8		0.014682629	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1311	chr15	95268493	95268494	rs4984406	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q26.2	MCTP2	rs4984406-T	0.514	8E-8		0.016	[0.0099-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr15	95268493	95268494	rs4984406	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q26.2	MCTP2	rs4984406-T	0.512	2E-7	(EA)	0.016	[0.0098-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr15	95268493	95268494	rs4984406	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	15q26.2	MCTP2	rs4984406-T	0.511	1E-6	(EA, women)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1311	chr15	95270466	95270467	rs7173947	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	15q26.2	intergenic	rs7173947-C	0.29	3E-8	(ALP)	0.105	[0.068-0.142] unit decrease	Illumina [561583]	N
1311	chr15	95271377	95271378	rs11633626	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q26.2	NA	rs11633626-A	0.6313	7E-19		0.0157	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1311	chr15	95271403	95271404	rs7181498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.2		rs7181498-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1311	chr15	95271871	95271872	rs8025516	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.2	NR	rs8025516-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1311	chr15	95274348	95274349	rs11073383	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	15q26.2	NA	rs11073383-A	0.4816	3E-16		0.0139	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1311	chr15	95275889	95275890	rs8038574	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q26.2	MCTP2	rs8038574-T	0.346246	4E-10		0.00907367	[0.0062-0.0119] unit increase	Affymetrix [12370749]	N
1311	chr15	95275916	95275917	rs62018380	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	15q26.2	MCTP2	rs62018380-C	0.869	2E-9		0.047	[0.032-0.062] unit increase	Illumina [7428049] (imputed)	N
1311	chr15	95283366	95283367	rs2388881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q26.2		rs2388881-C	NR	2E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	15q26.2		rs12906962-C	NR	2E-8		0.0359	[0.023-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	15q26.2		rs12906962-C	NR	2E-9		0.0438	[0.029-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q26.2		rs12906962-C	NR	4E-13		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q26.2		rs12906962-C	NR	2E-17		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	15q26.2	CTD-2576F9.2	rs12906962-C	0.316545	1E-9		0.054708365	[0.037-0.072] unit increase	Affymetrix [7288503] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.2		rs12906962-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.2	intergenic	rs12906962-C	0.6175	5E-11		0.2324	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	15q26.2	MCTP2	rs12906962-T	0.68	5E-9		0.341	[0.23-0.45] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	15q26.2	MCTP2	rs12906962-T	0.680744	2E-11	(males)	0.607292	[0.43-0.78] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	15q26.2	MCTP2	rs12906962-T	0.68	4E-13		0.475	[0.35-0.6] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	15q26.2	MCTP2	rs12906962-T	0.668602	3E-9		0.0375035	[0.025-0.05] unit increase	Affymetrix [509255] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	15q26.2	MCTP2	rs12906962-T	0.66858	3E-14		0.0476183	[0.035-0.06] unit increase	Affymetrix [509255] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q26.2	chr15mb95	rs12906962-T	0.68	6E-14		0.221	[0.16-0.28] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1312	chr15	95312070	95312071	rs12906962	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.2	MCTP2, LOC400456	rs12906962-T		1E-10		0.16	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1312	chr15	95313063	95313064	rs12911255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	15q26.2		rs12911255-T	NR	1E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1312	chr15	95318585	95318586	rs17664713	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	15q26.2	MCTP2	rs17664713-?	NR	5E-6		0.28	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
1312	chr15	95318766	95318767	rs16949516	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		15q26.2	MCTP2	rs16949516-T	NR	4E-6		0.2015	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1312	chr15	95352024	95352025	rs117175496	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.2	NR	rs117175496-A	0.02091	8E-11	(LTF)	0.2919	NR unit increase	Illumina [1671387] (imputed)	N
1312	chr15	95388950	95388951	rs8039237	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	15q26.2	MCTP2, NR2F2	rs8039237-C	0.03	1E-7		0.79	[0.52-1.06] unit increase	Illumina [8344766] (imputed)	N
1312	chr15	95389210	95389211	rs185555568	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	15q26.2		rs185555568-A	0.02	3E-10				NR [NR] (imputed)	N
1312	chr15	95399031	95399032	rs184779992	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	15q26.2		rs184779992-?	NR	1E-10		2.931	[2.04-3.82] unit increase	Affymetrix [NR] (imputed)	N
1312	chr15	95419959	95419960	rs2892626	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	NR2F2	rs2892626-?	NR	8E-6	(SM 18:1)	0.1886646	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1312	chr15	95419959	95419960	rs2892626	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	NR2F2	rs2892626-?	NR	7E-6	(SM 22:1)	0.19089118	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1312	chr15	95419959	95419960	rs2892626	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	NR2F2	rs2892626-?	NR	6E-6	(SM 16:0)	0.19091362	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1313	chr15	95444066	95444067	rs8032680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs8032680-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1313	chr15	95467015	95467016	rs79908203	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC087633.2	rs79908203-?	NR	6E-10	(female)	2.60062	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1313	chr15	95511836	95511837	rs6496074	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	15q26.2	MCTP2	rs6496074-?	NR	3E-6	(TrailsB)			Illumina [up to 563855]	N
1313	chr15	95512719	95512720	rs142484525	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	15q26.2	intergenic	rs142484525-T	0.011	3E-6		6.364	[2.944-13.76]	Illumina [7585874] (imputed)	N
1314	chr15	95599378	95599379	rs2168791	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	15q26.2		rs2168791-?	NR	6E-6		0.865102	[0.8-0.93]	NR [674885]	N
1314	chr15	95615785	95615786	rs291028	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	15q26.2	LOC400456	rs291028-?	NR	5E-6	(Response)	1.64	[NR]	Illumina [~ 7000000] (imputed)	N
1314	chr15	95639860	95639861	rs116865000	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q26.2	intergenic	rs116865000-A	0.0254361791782511	8E-9	(C_Gammaproteobacteria_RNT)	0.554811	[0.37-0.74] unit increase	Illumina [7711310] (imputed)	N
1314	chr15	95641585	95641586	rs73459929	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	15q26.2	Intergenic	rs73459929-T	0.161	3E-6		0.6729	[0.39-0.96] unit increase	Illumina [9520174] (imputed)	N
1314	chr15	95652522	95652523	rs73459955	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	15q26.2	intergenic	rs73459955-C	0.839	2E-6	(AA)	0.603	unit decrease	Illumina [at least 5086170] (imputed)	N
1314	chr15	95655999	95656000	rs11637857	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	NR2F2	rs11637857-?	NR	5E-6	(TAG 54:5)	0.15794358	[0.09-0.226] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1315	chr15	95683465	95683466	rs191801524	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	15q26.2	NR	rs191801524-?	NR	9E-6		0.5225	[0.31-0.74] unit increase	Illumina [at least 560000] (imputed)	N
1315	chr15	95686139	95686140	rs1444849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q26.2		rs1444849-C	NR	2E-8		0.0151	[0.0098-0.0204] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1315	chr15	95686139	95686140	rs1444849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.2	NR	rs1444849-C	0.102521	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1315	chr15	95691097	95691098	rs6650529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q26.2		rs6650529-A	0.062228	5E-9		0.026779683	[0.018-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1315	chr15	95691097	95691098	rs6650529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	15q26.2		rs6650529-A	0.062225	1E-9		0.027778286	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1315	chr15	95696201	95696202	rs12593543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q26.2		rs12593543-T	0.060812	8E-10		0.028499605	[0.019-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1315	chr15	95696201	95696202	rs12593543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.2	NR	rs12593543-T	0.0894968	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1315	chr15	95696201	95696202	rs12593543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q26.2	NR	rs12593543-T	0.062425	4E-11		0.02536	[0.018-0.033] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1315	chr15	95696201	95696202	rs12593543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q26.2		rs12593543-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1315	chr15	95740235	95740236	rs290671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q26.2	NR	rs290671-T	0.3468	2E-10		0.012528	[0.0087-0.0164] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1315	chr15	95789351	95789352	rs10152563	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	15q26.2		rs10152563-A	NR	1E-8		1.0454		Affymetrix, Illumina [62056310] (imputed)	N
1316	chr15	95828704	95828705	rs12912439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	15q26.2	NR	rs12912439-T	NR	1E-14		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1316	chr15	95829523	95829524	rs1994147	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q26.2		rs1994147-A	0.28	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
1316	chr15	95829523	95829524	rs1994147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.2		rs1994147-A	NR	5E-12		0.0103	[0.0074-0.0132] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1316	chr15	95829523	95829524	rs1994147	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.2	NR	rs1994147-A	0.2883	2E-9				NR [9056863] (imputed)	N
1316	chr15	95829523	95829524	rs1994147	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 209)	19,670 European ancestry individuals	NA	15q26.2		rs1994147-?	NR	2E-8				NR [9705931] (imputed)	N
1316	chr15	95829523	95829524	rs1994147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs1994147-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1316	chr15	95863250	95863251	rs79764833	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01197	rs79764833-?	NR	9E-9	(male)	1.93138	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1316	chr15	95863250	95863251	rs79764833	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01197	rs79764833-?	NR	2E-9		1.61602	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1316	chr15	95903441	95903442	rs17556113	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00924	rs17556113-?	NR	1E-9		1.48466	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1316	chr15	95906268	95906269	rs4984446	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00924	rs4984446-?	NR	1E-9	(male)	1.49347	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1316	chr15	95934334	95934335	rs150589038	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	15q26.2	RP11-398J10.1	rs150589038-A	NR	7E-7		4.965	NR z score increase	Illumina [8978282] (imputed)	N
1317	chr15	95952954	95952955	rs11629709	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	15q26.2	NR	rs11629709-G	0.06557	3E-6		0.2812	[0.16-0.4] unit increase	Illumina [10677593] (imputed)	N
1317	chr15	96009882	96009883	rs72762188	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	15q26.2	NR2F2	rs72762188-A	0.8023	1E-8		0.013804553	[0.009-0.0186] unit increase	Illumina [9339358] (imputed)	N
1317	chr15	96014142	96014143	rs7170668	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	15q26.2	NR2F2	rs7170668-T	0.632	1E-10		0.035	[0.024-0.045] unit increase	Illumina [7428049] (imputed)	N
1317	chr15	96038805	96038806	rs7172578	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q26.2	NR	rs7172578-C	0.369	7E-8		0.00603491	[0.0038-0.0082] unit decrease	NR [9732723] (imputed)	N
1317	chr15	96046555	96046556	rs16975275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q26.2		rs16975275-A	0.2306	8E-10		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1317	chr15	96046555	96046556	rs16975275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q26.2	Intergenic	rs16975275-A	0.2306	4E-9	(MTAG)	0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1317	chr15	96052741	96052742	rs933769	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	15q26.2	intergenic	rs933769-T	0.19	7E-6		0.097	[NR] unit decrease	Illumina [~ 300000]	N
1317	chr15	96059904	96059905	rs74034252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.2	NR	rs74034252-A	0.0122	2E-8	(FERMT2)	0.1043	NR unit increase	Illumina [1671387] (imputed)	N
1318	chr15	96086079	96086080	rs12904124	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q26.2	NR	rs12904124-T	NR	8E-6		1.534	[1.27-1.85]	Illumina [13976150] (imputed)	N
1318	chr15	96101017	96101018	rs7183672	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	15q26.2	intergenic	rs7183672-?	0.32030000000000003	1E-13		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1318	chr15	96131959	96131960	rs8028726	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	15q26.2	Chr15q26	rs8028726-T	0.44	4E-7		1.04	[1.03-1.06]	NR [~ 8000000] (imputed)	N
1318	chr15	96141866	96141867	rs10520789	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q26.2	MCTP2	rs10520789-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
1318	chr15	96141866	96141867	rs10520789	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	15q26.2	NR2F2	rs10520789-?	NR	6E-7	(Change in DAS28)			Illumina [486450]	N
1318	chr15	96145097	96145098	rs8035878	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.2	intergenic	rs8035878-T	0.4523	1E-12		0.0137	[0.01-0.0174] unit increase	Affymetrix [18391927] (imputed)	N
1318	chr15	96146413	96146414	rs17581137	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	15q26.2	LINC00924	rs17581137-A	0.757514	1E-6		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1318	chr15	96146413	96146414	rs17581137	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	15q26.2	intergenic	rs17581137-A	0.754	1E-8		0.0373	[0.025-0.05] unit increase	Affymetrix [at least 7947838] (imputed)	N
1318	chr15	96146413	96146414	rs17581137	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	15q26.2	intergenic	rs17581137-A	0.7548	1E-8		0.0419	[0.027-0.056] unit increase	NR [8041861] (imputed)	N
1318	chr15	96156367	96156368	rs4321143	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	15q26.2	intergenic	rs4321143-G	0.28	7E-6	(maternal criticism)	1.13	[NR] unit increase	Perlegen [429901]	N
1318	chr15	96163157	96163158	rs16973982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs16973982-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1318	chr15	96164289	96164290	rs6496127	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	15q26.2	NR	rs6496127-G	0.54	7E-9		0.01	[0.0065-0.0135] unit increase	Affymetrix [2446094] (imputed)	N
1318	chr15	96164289	96164290	rs6496127	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	15q26.2	NR	rs6496127-G	0.54	5E-8				Affymetrix [2446094] (imputed)	N
1318	chr15	96172323	96172324	rs4561414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	15q26.2		rs4561414-A	NR	1E-11		0.148	[0.11-0.19] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1318	chr15	96179389	96179390	rs2006950	31000673	Kim W	2019-04-18	Eur Respir J	A Genome-Wide Association Study implicates NR2F2 in Lymphangioleiomyomatosis Pathogenesis.	Lymphangioleiomyomatosis (sporadic)	426 European ancestry cases, 852 European ancestry controls	196 European ancestry cases, up to 226,140 European ancestry controls, up to 1,121 Hispanic white controls	15q26.2	NR2F2	rs2006950-G	0.762	3E-8		2.4044242	NR	Illumina [5426936] (imputed)	N
1318	chr15	96182065	96182066	rs12594708	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	15q26.2	NR	rs12594708-T	0.076	4E-8		0.165	[0.11-0.22] unit decrease	Affymetrix [10972371] (imputed)	N
1318	chr15	96182229	96182230	rs10520795	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	SPATA8	rs10520795-?	NR	7E-6	(carnosine)	1.0141072	[0.57-1.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1318	chr15	96190481	96190482	rs10520797	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	15q26.2	LOC145820	rs10520797-?		1E-8				Affymetrix, Illumina [2374420] (imputed)	N
1318	chr15	96190481	96190482	rs10520797	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	15q26.2	NR	rs10520797-G	NR	4E-8		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1318	chr15	96190481	96190482	rs10520797	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	15q26.2	NR	rs10520797-G	NR	8E-8				Affymetrix, Illumina [NR] (imputed)	N
1319	chr15	96218893	96218894	rs142609537	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	15q26.2	LOC145820, NR2F2	rs142609537-A	0.01	9E-7		0.6965	[0.42-0.97] unit increase	Illumina [~ 9000000] (imputed)	N
1319	chr15	96218893	96218894	rs142609537	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	15q26.2	LOC145820, NR2F2	rs142609537-A	0.01	4E-6	(EA)	0.6585	[0.38-0.94] unit increase	Illumina [~ 9000000] (imputed)	N
1319	chr15	96219502	96219503	rs7166920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q26.2	NR	rs7166920-A	0.500636	1E-10		0.0196875	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1319	chr15	96223648	96223649	rs11856926	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q26.2	NR	rs11856926-G	0.551147	1E-24		0.0113684	[0.0091-0.0137] unit increase	Affymetrix [16582621] (imputed)	N
1319	chr15	96223648	96223649	rs11856926	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q26.2	NR	rs11856926-G	0.551147	2E-22		0.011587	[0.0091-0.014] unit increase	Affymetrix [16582614] (imputed)	N
1319	chr15	96224269	96224270	rs12906447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q26.2	NR	rs12906447-C	0.551672	4E-14		0.00899915	[0.0065-0.0115] unit increase	Affymetrix [16585854] (imputed)	N
1319	chr15	96224269	96224270	rs12906447	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q26.2	NR	rs12906447-C	0.551672	1E-9		0.00869057	[0.0059-0.0115] unit increase	Affymetrix [16585866] (imputed)	N
1319	chr15	96227919	96227920	rs12898856	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q26.2	NR	rs12898856-C	0.551374	5E-36		0.0102122	[0.0086-0.0119] unit increase	Affymetrix [16582909] (imputed)	N
1319	chr15	96227919	96227920	rs12898856	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q26.2	NR	rs12898856-C	0.551374	9E-29		0.0101878	[0.0083-0.012] unit increase	Affymetrix [16582965] (imputed)	N
1319	chr15	96235365	96235366	rs17506074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs17506074-C	NR	2E-9		0.0182	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1319	chr15	96245019	96245020	rs1822246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q26.2	NR	rs1822246-A	0.703311	2E-9		0.0083795	[0.0056-0.0111] unit increase	Affymetrix [16578495] (imputed)	N
1319	chr15	96267138	96267139	rs2584240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q26.2	Intergenic	rs2584240-A	0.8903	3E-8	(MTAG)	0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1319	chr15	96271594	96271595	rs2584242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q26.2		rs2584242-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1319	chr15	96277147	96277148	rs80255315	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	15q26.2	LOC145820	rs80255315-A	0.0438	3E-6		2.199	[1.581-3.058]	Affymetrix, Illumina [14074516] (imputed)	N
1319	chr15	96316456	96316457	rs1541995	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	15q26.2	NR2F2	rs1541995-?	NR	4E-73		1.226	[1.199-1.253]	Illumina [13729857] (imputed)	N
1319	chr15	96332860	96332861	rs2567426	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	15q26.2	AC015574.1	rs2567426-A	0.33	3E-6	(digit symbol)	0.13	[0.07-0.19] unit increase	Illumina [~ 610000]	N
1320	chr15	96372628	96372629	rs744738	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.2	LOC644192	rs744738-A	0.144	6E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1320	chr15	96389825	96389826	rs11852588	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q26.2	NA	rs11852588-G		1E-9		0.0125066	[0.0085-0.0165] unit decrease	Illumina [13288253] (imputed)	N
1320	chr15	96424398	96424399	rs4984460	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	15q26.2	LOC400456, LOC145820, NR2F2, MIR1469	rs4984460-T	0.75	2E-6		0.11	[0.065-0.155] unit decrease	Affymetrix, Illumina [6444471] (imputed)	N
1320	chr15	96452043	96452044	rs6496140	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	15q26.2	NR	rs6496140-G	0.006	5E-10	(Unifrac metric)	6.107179	NR z-score increase	Illumina [5293637] (imputed)	N
1320	chr15	96460898	96460899	rs62008078	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	15q26.2	LINC00924, NR2F2	rs62008078-C	0.44	4E-13		0.48	[0.34-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1320	chr15	96460898	96460899	rs62008078	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	15q26.2	LINC00924, NR2F2	rs62008078-C	0.4469	3E-12		0.4784	[0.34-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1321	chr15	96488374	96488375	rs79890196	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	15q26.2	NR2F2-AS1	rs79890196-C	2.6E-4	2E-8		2.6	[1.71-3.48]	NR [10849711] (imputed)	N
1321	chr15	96582996	96582997	rs16976004	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	15q26.2		rs16976004-?	NR	2E-9		0.016086	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1322	chr15	96635897	96635898	rs4984496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q26.2		rs4984496-G	NR	3E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1322	chr15	96635897	96635898	rs4984496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	15q26.2		rs4984496-G	NR	2E-13		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1322	chr15	96635897	96635898	rs4984496	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	15q26.2	chr15mb96	rs4984496-G	0.67238753	3E-9		0.1759	[0.12-0.23] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1322	chr15	96635898	96635899	rs4984497	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	15q26.2	LOC145820, MIR1469	rs4984497-T		5E-9		0.148	unit increase	Affymetrix [at least 2696785] (imputed)	N
1322	chr15	96647792	96647793	rs4984499	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	15q26.2	intergenic	rs4984499-T	0.35	8E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1322	chr15	96666401	96666402	rs11629876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	15q26.2		rs11629876-T	NR	8E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1322	chr15	96666401	96666402	rs11629876	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	15q26.2	NR	rs11629876-T	0.331	4E-9		0.001408	[0.00094-0.00188] unit decrease	Affymetrix [NR] (imputed)	N
1322	chr15	96671968	96671969	rs11073464	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	15q26.2	NR	rs11073464-G	0.2969	2E-7		0.1736	[0.11-0.24] unit decrease	Illumina [10677593] (imputed)	N
1322	chr15	96679185	96679186	rs116784579	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		15q26.2	NR	rs116784579-C	0.9417835999999999	6E-6		1.1524932	[1.23-1.15]	Affymetrix [16499239] (imputed)	N
1322	chr15	96687355	96687356	rs4386090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs4386090-G	NR	1E-24		0.0259	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1322	chr15	96688369	96688370	rs766716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs766716-C	NR	3E-20		0.0287	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1322	chr15	96698613	96698614	rs727895	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	15q26.2	NR	rs727895-?	NR	8E-7			[NR]	Illumina [5432814] (imputed)	N
1322	chr15	96705906	96705907	rs35296828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs35296828-T	NR	8E-33		0.0332	[0.028-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1322	chr15	96706296	96706297	rs118113579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs118113579-T	NR	3E-11		0.0488	[0.034-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q26.2		rs8023580-C	NR	2E-18		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	15q26.2	NR	rs8023580-T	0.72	1E-19		1.13	NR	NR [8853336] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	15q26.2	LOC105369212	rs8023580-T	0.722819	2E-20		0.00517295	[0.004-0.0063] unit decrease	Affymetrix [13995440] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	NR2F2	rs8023580-T	0.72	8E-8	(Women)	0.038	[0.024-0.052] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	NR2F2	rs8023580-T	0.72	8E-12	(Men + Women)	0.03	[0.021-0.039] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1322	chr15	96708290	96708291	rs8023580	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	15q26.2	NR2F2	rs8023580-T	0.72	5E-6	(Men)	0.025	[0.014-0.036] umol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
1322	chr15	96712225	96712226	rs4984514	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	15q26.2	NR	rs4984514-?	NR	4E-6		0.1346	[0.077-0.192] unit increase	Illumina [at least 560000] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	15q26.2		rs56332871-A	NR	1E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	15q26.2	LOC105369212	rs56332871-C	0.725864	4E-18		0.00216471	[0.0017-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	15q26.2	MCTP2, NR2F2	rs56332871-A	0.27	3E-9		5.92	z-score increase	Affymetrix [4311822] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	15q26.2	NR	rs56332871-A	0.272698	4E-34		0.0172791	[0.014-0.02] unit increase	Affymetrix [16578495] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	15q26.2	NR	rs56332871-A	0.272347	2E-47		0.0472832	[0.041-0.054] unit increase	Affymetrix [16577313] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	15q26.2	NR	rs56332871-A	0.27215	1E-320		0.0348607	[0.033-0.037] unit increase	Affymetrix [16582909] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	15q26.2	NR	rs56332871-A	0.27225200000000005	9E-188		0.038702	[0.036-0.041] unit increase	Affymetrix [16585854] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	15q26.2	NR	rs56332871-A	0.27202400000000004	6E-140		0.0306681	[0.028-0.033] unit increase	Affymetrix [16582621] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	15q26.2	NR	rs56332871-A	0.27215	3E-242		0.0340883	[0.032-0.036] unit increase	Affymetrix [16582965] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	15q26.2	NR	rs56332871-A	0.27225200000000005	7E-134		0.0379366	[0.035-0.041] unit increase	Affymetrix [16585866] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	15q26.2	NR	rs56332871-A	0.27202400000000004	4E-111		0.0298253	[0.027-0.033] unit increase	Affymetrix [16582614] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	15q26.2	NR	rs56332871-C	0.727883	9E-16		0.0181845	[0.014-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1322	chr15	96714815	96714816	rs56332871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	15q26.2	NR	rs56332871-C	0.727843	1E-26		0.0298823	[0.024-0.035] unit increase	Affymetrix [16585745] (imputed)	N
1322	chr15	96719228	96719229	rs8034595	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	15q26.2	NR2F2	rs8034595-A	0.31	2E-15		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1322	chr15	96719228	96719229	rs8034595	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	15q26.2	NR2F2	rs8034595-A	0.28	3E-8		0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1322	chr15	96729927	96729928	rs8026207	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	15q26.2	NR2F2-AS1	rs8026207-T	0.33	6E-6	(female)	0.0812	[0.047-0.116] unit decrease	Illumina [6380737] (imputed)	N
1322	chr15	96729927	96729928	rs8026207	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	15q26.2	NR2F2-AS1	rs8026207-T	0.33	3E-6		0.0598	[0.035-0.085] unit decrease	Illumina [6380737] (imputed)	N
1322	chr15	96730552	96730553	rs12592175	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs12592175-C	NR	7E-16		0.025	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1323	chr15	96732295	96732296	rs72769740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	15q26.2	NR	rs72769740-A	NR	3E-20		0.0519	[0.041-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1323	chr15	96741419	96741420	rs9806400	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	15q26.2	LOC145820, NR2F2	rs9806400-?		2E-7	(IFN gamma response)			Illumina [NR]	N
1323	chr15	96758440	96758441	rs7167152	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q26.2	NR	rs7167152-?	NR	7E-12				Affymetrix [NR]	N
1323	chr15	96767311	96767312	rs2246754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.2		rs2246754-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1323	chr15	96782580	96782581	rs187835712	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	15q26.2	NR	rs187835712-C	0.8721	9E-7		0.09	[0.054-0.126] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1323	chr15	96809781	96809782	rs1437588	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	15q26.2	intergenic	rs1437588-?	0.52	3E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1323	chr15	96830549	96830550	rs2398162	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Hypertension	1,952 European ancestry cases, 2,938 European ancestry controls	NA	15q26.2	intergenic	rs2398162-A	0.74	6E-6		1.31	[1.03-1.67]	Affymetrix [469557]	N
1323	chr15	96832557	96832558	rs8040849	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	15q26.2	NR	rs8040849-?	NR	3E-6	(Richness)	13.2777	[7.79-18.77] unit increase	Illumina [5293637] (imputed)	N
1323	chr15	96841523	96841524	rs7173576	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	15q26.2	NR	rs7173576-T	0.26	3E-12		0.025	[0.017-0.033] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1323	chr15	96841523	96841524	rs7173576	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q26.2	NR	rs7173576-T	0.265	1E-8		0.00947413	[0.0062-0.0127] unit increase	NR [9732723] (imputed)	N
1323	chr15	96844726	96844727	rs7181753	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	15q26.2	intergenic	rs7181753-T	0.199	3E-6		0.128	[NR] unit increase	Illumina [634583]	N
1323	chr15	96852637	96852638	rs55958435	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q26.2	NR2F2	rs55958435-A	0.74827	2E-16		0.024732	[0.019-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1323	chr15	96852798	96852799	rs61037031	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	15q26.2	NR2F2-AS1	rs61037031-?		2E-6		4.02	[2.27-7.12]	Illumina [NR] (imputed)	N
1323	chr15	96858408	96858409	rs4310804	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q26.2	NR	rs4310804-G	0.247	4E-13		0.00923563	[0.0067-0.0117] unit decrease	NR [9732723] (imputed)	N
1323	chr15	96858408	96858409	rs4310804	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q26.2	NR	rs4310804-G	0.247	8E-10		0.018187258	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1324	chr15	96862760	96862761	rs11631953	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q26.2		rs11631953-A	0.769	1E-9		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1324	chr15	96863168	96863169	rs2398180	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	15q26.2		rs2398180-T	NR	5E-6		1.1851		Illumina [up to 7574753] (imputed)	N
1324	chr15	96863168	96863169	rs2398180	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	15q26.2	NR2F2-AS1	rs2398180-T	0.53	3E-7		1.201	NR	Illumina [7574753] (imputed)	N
1324	chr15	96878436	96878437	rs2001192	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.2	NR	rs2001192-C	0.2341	3E-9				NR [9056863] (imputed)	N
1324	chr15	96898005	96898006	rs12594634	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q26.2	NR2F2, SPATA8	rs12594634-T	0.7356	9E-7		0.00941244	[0.0057-0.0132] unit decrease	Affymetrix [11880941] (imputed)	N
1324	chr15	96907818	96907819	rs12442674	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q26.2		rs12442674-C	0.25	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
1324	chr15	96907818	96907819	rs12442674	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q26.2	NR	rs12442674-C	0.2736	2E-9				NR [9056863] (imputed)	N
1324	chr15	96907818	96907819	rs12442674	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q26.2	NR2F2, SPATA8	rs12442674-A	0.7296	8E-9		1.0231643		Affymetrix [11880941] (imputed)	N
1324	chr15	96909838	96909839	rs58209041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	15q26.2	Intergenic	rs58209041-A	0.2333	3E-8	(MTAG)	0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1324	chr15	96911138	96911139	rs4984541	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q26.2		rs4984541-A	0.7666	3E-16		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1324	chr15	96911138	96911139	rs4984541	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q26.2	Intergenic	rs4984541-A	0.7666	1E-18	(MTAG)	0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1324	chr15	96911138	96911139	rs4984541	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	15q26.2	ENSG00000259275	rs4984541-A	NR	7E-9		0.020975636	[0.014-0.028] unit decrease	Affymetrix [NR]	N
1324	chr15	96915278	96915279	rs55672708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	15q26.2	Intergenic	rs55672708-A	0.8006	2E-10	(MTAG)	0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1324	chr15	96926472	96926473	rs9630449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q26.2		rs9630449-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1324	chr15	96953324	96953325	rs144691581	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	15q26.2	NR	rs144691581-G		4E-7		0.4882	[0.3-0.68] SD units decrease	NR [10700000] (imputed)	N
1324	chr15	96957968	96957969	rs35625885	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	15q26.2	NR	rs35625885-A		1E-8		0.0357605	[0.023-0.048] unit decrease	NR [6694342]	N
1324	chr15	96959854	96959855	rs7174156	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	15q26.2	NR	rs7174156-A	NR	7E-6	(phenotype 2)	1.6	[NR]	Illumina [> 8000000] (imputed)	N
1324	chr15	96975867	96975868	rs2118405	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	15q26.2	NR2F2	rs2118405-T	NR	2E-6		4.782	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1324	chr15	96988656	96988657	rs8029518	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	15q26.2	NR	rs8029518-?	NR	9E-7		0.8253	[0.75-0.9]	Illumina [NR] (imputed)	N
1324	chr15	96988656	96988657	rs8029518	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	15q26.2	NR	rs8029518-?	NR	5E-7		0.8	[0.71-0.89]	Illumina [NR] (imputed)	N
1325	chr15	97003988	97003989	rs11852334	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	15q26.2	NR	rs11852334-T	NR	3E-9		5.95	z score increase	Affymetrix [10847151] (imputed)	N
1325	chr15	97018732	97018733	rs113154706	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	15q26.2	intergenic	rs113154706-?	NR	7E-6	(SF5)			Affymetrix [5476100] (imputed)	N
1325	chr15	97064533	97064534	rs2398227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	15q26.2	Intergenic	rs2398227-A	0.2197	5E-10	(MTAG)	0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1325	chr15	97064533	97064534	rs2398227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	15q26.2	Intergenic	rs2398227-A	0.2197	5E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1325	chr15	97069821	97069822	rs12592780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs12592780-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1325	chr15	97079332	97079333	rs2083117	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	15q26.2		rs2083117-G	NR	1E-6	(GLM)	2.1099	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1325	chr15	97091510	97091511	rs12916220	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	SPATA8	rs12916220-?	NR	3E-6	(inositol)	0.4891588	[0.28-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1325	chr15	97108827	97108828	rs2139953	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	15q26.2	SPATA8	rs2139953-A		5E-6	(Hispanic)	2.0	[1.1-3.7]	Affymetrix, Illumina [NR] (imputed)	N
1325	chr15	97119594	97119595	rs8030487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	15q26.2		rs8030487-A	0.6907	3E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1326	chr15	97162185	97162186	rs80192238	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	15q26.2		rs80192238-G	0.015822	7E-7		0.13298	[0.08-0.186] unit increase	Affymetrix [15580782] (imputed)	N
1326	chr15	97162185	97162186	rs80192238	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	15q26.2		rs80192238-G	0.015822	1E-6		0.13197	[0.078-0.186] unit increase	Affymetrix [15580782] (imputed)	N
1326	chr15	97162966	97162967	rs34133817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	15q26.2		rs34133817-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1326	chr15	97169998	97169999	rs12910872	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	15q26.2	NR	rs12910872-T	0.12093544025735	1E-8		0.008054953	[0.0053-0.0108] unit decrease	NR [NR]	N
1326	chr15	97169998	97169999	rs12910872	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	15q26.2	NR	rs12910872-T	0.12093544025735	2E-8		0.009811949	[0.0064-0.0132] unit decrease	NR [NR]	N
1326	chr15	97169998	97169999	rs12910872	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	15q26.2	NR	rs12910872-T	0.12093544025735	1E-8		0.012804346	[0.0084-0.0172] unit decrease	NR [NR]	N
1326	chr15	97169998	97169999	rs12910872	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	15q26.2	NR	rs12910872-T	0.12093544025735	1E-8		0.008161767	[0.0053-0.011] unit decrease	NR [NR]	N
1326	chr15	97175523	97175524	rs9944275	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	15q26.2	NR	rs9944275-A	0.0834	5E-8		0.0281	[0.018-0.038] unit decrease	Illumina [NR] (imputed)	N
1326	chr15	97175523	97175524	rs9944275	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	15q26.2	NR	rs9944275-A	0.087	4E-9		0.0229	[0.015-0.031] unit decrease	Illumina [NR] (imputed)	N
1326	chr15	97193554	97193555	rs73459431	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	15q26.2		rs73459431-?	NR	3E-6		0.31	[0.18-0.44] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1327	chr15	97262426	97262427	rs4533251	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	15q26.2	SPATA8	rs4533251-T	0.15	4E-6				Perlegen [378332]	N
1327	chr15	97349914	97349915	rs141170951	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	15q26.2	SPATA8	rs141170951-T	NR	3E-6		0.02804	[0.016-0.04] unit increase	Illumina [NR] (imputed)	N
1327	chr15	97357519	97357520	rs1503351	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	15q26.2	SPATA8, LOC91948	rs1503351-A	0.05	4E-8		0.1699	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1328	chr15	97394825	97394826	rs6496190	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	15q26.2	SPATA8	rs6496190-G	0.568	8E-6		0.1	[0.14-0.05] unit decrease	Affymetrix [7435577] (imputed)	N
1328	chr15	97417589	97417590	rs12909522	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	15q26.2	NR	rs12909522-?	NR	7E-6		3.07	[2.35-4.02]	Illumina [539000] (imputed)	N
1328	chr15	97452828	97452829	rs7174062	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	15q26.2	SPATA8, LINC00923	rs7174062-G	0.73	3E-14		1.08	[1.07-1.09]	Illumina [at least 560000] (imputed)	N
1328	chr15	97452828	97452829	rs7174062	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	15q26.2	SPATA8, LINC00923	rs7174062-?	NR	4E-14		1.077	[1.057-1.098]	Illumina [13754664] (imputed)	N
1328	chr15	97453832	97453833	rs1011556	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	15q26.2	SPATA8	rs1011556-A	0.721	5E-8		0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1328	chr15	97454879	97454880	rs60283548	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	15q26.2	7SK, SPATA8	rs60283548-C	NR	4E-8		0.1327	[NR] unit decrease	Illumina [11892802] (imputed)	N
1328	chr15	97476270	97476271	rs12442493	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	15q26.2	NR	rs12442493-C	0.304455	5E-6				Illumina [5378266] (imputed)	N
1328	chr15	97502990	97502991	rs2399626	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q26.2	NR	rs2399626-A	0.347	6E-11		0.00741971	[0.0052-0.0096] unit increase	NR [9732723] (imputed)	N
1328	chr15	97502990	97502991	rs2399626	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q26.2	NR	rs2399626-A	0.353	1E-8		0.00873826	[0.0057-0.0117] unit decrease	NR [9732723] (imputed)	N
1328	chr15	97502994	97502995	rs1155641	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q26.2		rs1155641-G	0.652	1E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1328	chr15	97505900	97505901	rs1014403	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	15q26.2	SPATA8	rs1014403-G	0.585869	8E-10		0.0129729	[0.0088-0.0171] unit increase	NR [16516521] (imputed)	N
1328	chr15	97505900	97505901	rs1014403	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	15q26.2	NA	rs1014403-G		2E-9		0.0111816	[0.0075-0.0148] unit decrease	Illumina [13288253] (imputed)	N
1328	chr15	97514403	97514404	rs8042134	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	15q26.2		rs8042134-T	0.541	1E-12		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1329	chr15	97548538	97548539	rs234509	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.2	NR2F2	rs234509-?	NR	9E-6	(malate)	0.6683012	[0.37-0.96] unit increase	Affymetrix [at least 2500000] (imputed)	N
1329	chr15	97549150	97549151	rs4965065	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	15q26.2	NR	rs4965065-?	NR	6E-6		4.53	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1329	chr15	97553433	97553434	rs234545	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalibacterium prausnitzii E abundance in stool	5,959 Finnish ancestry individuals	NA	15q26.2		rs234545-A	0.444696	2E-8		0.0505812	[0.033-0.068] unit decrease	Illumina [7980478] (imputed)	N
1329	chr15	97559158	97559159	rs994754	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		SPATA8	rs994754-T	0.1	3E-6				Illumina [1679420] (imputed)	N
1329	chr15	97602537	97602538	rs34525745	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	15q26.2	NR	rs34525745-?		2E-6				Illumina [up to 6969139] (imputed)	N
1329	chr15	97602537	97602538	rs34525745	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	15q26.2	Intergenic	rs34525745-T	0.910723	3E-7		0.330816	[0.2-0.46] unit decrease	Illumina [6969139] (imputed)	N
1329	chr15	97607680	97607681	rs8023715	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	15q26.2	SPATA8	rs8023715-A	0.075	1E-8		1.812	[1.638-2.00]	Illumina [NR]	N
1329	chr15	97647033	97647034	rs76906291	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q26.2	Intergenic	rs76906291-?		6E-6		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
1329	chr15	97647033	97647034	rs76906291	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	15q26.2	Intergenic	rs76906291-?		4E-6		1.25	[1.14-1.37]	Illumina [7645193] (imputed)	N
1330	chr15	97669521	97669522	rs28362004	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	15q26.2		rs28362004-C	0.449786	2E-6		0.0122609	[0.0072-0.0174] unit increase	Illumina [13900000] (imputed)	N
1330	chr15	97714533	97714534	rs12441664	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	15q26.2		rs12441664-T	NR	8E-8	(sleep onset)	0.2782	[0.18-0.38] unit increase	Affymetrix [7141204] (imputed)	N
1330	chr15	97740737	97740738	rs28377390	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	15q26.2	LOC101927286, SPATA8	rs28377390-?	0.007407	4E-12		15.31	[5.581-42.02]	Affymetrix [547296]	N
1330	chr15	97750334	97750335	rs1513859	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	15q26.2	SPATA8	rs1513859-G	0.011	7E-6	(Vitamin B12 )	0.03	[NR] pmol/L increase	Illumina [899892]	N
1331	chr15	97903173	97903174	rs80121476	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	15q26.2		rs80121476-?	NR	5E-8		2.168	[1.39-2.95] unit increase	Affymetrix [NR] (imputed)	N
1331	chr15	97910024	97910025	rs35633795	30134085	Zhang H	2018-07-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive flexibility assessed by the Wisconsin Card Sorting Test.	Cognitive flexibility	2,589 African American individuals, 2,284 European ancestry individuals	NA	15q26.2	LOC101927286	rs35633795-?	NR	1E-7	(AA)	0.08	unit increase	Illumina [9722417] (imputed)	N
1332	chr15	97946965	97946966	rs7170931	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q26.2	NR	rs7170931-?	NR	4E-10				Illumina [7760689] (imputed)	N
1332	chr15	97952237	97952238	rs72763380	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q26.2	NR	rs72763380-?	NR	2E-8				Illumina [7760689] (imputed)	N
1332	chr15	97982133	97982134	rs145474218	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	15q26.2	LOC101927286	rs145474218-C	0.012956586	3E-6		1.9609474	[1.476818807-2.603782368]	Illumina [10439017] (imputed)	N
1332	chr15	97992684	97992685	rs570487962	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	15q26.2	ARRDC4, IGF1R	rs570487962-?		2E-9	(model 2)	0.1	[0.05-0.22]	Illumina [29610185] (imputed)	N
1334	chr15	98216956	98216957	rs77166399	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	15q26.2		rs77166399-T	0.148487	9E-7		1.3925636	NR	Affymetrix [7846216] (imputed)	N
1334	chr15	98246014	98246015	rs289447	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	15q26.2	NR	rs289447-A	0.459	3E-7	(Females)	0.203697	[0.12-0.29] unit increase	Illumina [~ 6600000] (imputed)	N
1334	chr15	98267662	98267663	rs35008691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.2		rs35008691-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1334	chr15	98282614	98282615	rs12439829	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.2	NR	rs12439829-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1334	chr15	98296740	98296741	rs11854598	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 42)	19,670 European ancestry individuals	NA	15q26.2		rs11854598-?	NR	3E-9				NR [9705931] (imputed)	N
1334	chr15	98301366	98301367	rs11638950	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q26.2	NA	rs11638950-A	0.5888	6E-10		0.0107	[0.0074-0.014] unit increase	NR [~ 27400000] (imputed)	N
1335	chr15	98322384	98322385	rs4558394	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	15q26.2	LINC00923	rs4558394-A	0.85	9E-6		15.6495	[9.19-22.11] unit decrease	Illumina [~ 6000000] (imputed)	N
1335	chr15	98322889	98322890	rs975844	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q26.2	NR	rs975844-T	0.769	6E-9		0.00748837	[0.005-0.01] unit decrease	NR [9732723] (imputed)	N
1335	chr15	98335805	98335806	rs12594508	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in hypertension	1,185 Korean ancestry cases, 15,117 Korean ancestry controls	NA	15q26.2		rs12594508-C	0.3213	5E-6		1.229	[1.125-1.343]	Affymetrix [7975321] (imputed)	N
1335	chr15	98342664	98342665	rs1994683	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	15q26.2	NR	rs1994683-A	0.3598	7E-7		0.5021	[0.3-0.7] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1335	chr15	98343739	98343740	rs8035831	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q26.2		rs8035831-T	0.4	1E-14		7.73	z score increase	Affymetrix [9061022] (imputed)	N
1335	chr15	98345062	98345063	rs902621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.2		rs902621-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1335	chr15	98353824	98353825	rs71401350	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	15q26.2	NR	rs71401350-A	0.3094	2E-7		0.6452	[0.4-0.89] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1335	chr15	98367099	98367100	rs13379794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q26.2	NR	rs13379794-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1335	chr15	98402853	98402854	rs28517365	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	15q26.2		rs28517365-A	0.842591	8E-6		0.0173352	[0.0098-0.0249] unit decrease	Illumina [13900000] (imputed)	N
1335	chr15	98433405	98433406	rs9783701	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q26.2	NR	rs9783701-C	0.3487	6E-10				NR [9056863] (imputed)	N
1335	chr15	98433405	98433406	rs9783701	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	15q26.2	NR	rs9783701-?		1E-8				NR [7428630] (imputed)	N
1335	chr15	98434913	98434914	rs8043491	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q26.2		rs8043491-C	0.37	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr15	98438515	98438516	rs9944188	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 116)	19,670 European ancestry individuals	NA	15q26.2		rs9944188-?	NR	2E-9				NR [9705931] (imputed)	N
1336	chr15	98441115	98441116	rs9944257	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	15q26.2		rs9944257-G	0.37	6E-13		7.21	z score increase	Affymetrix [9061022] (imputed)	N
1336	chr15	98441115	98441116	rs9944257	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	15q26.2	NR	rs9944257-G	0.3447	8E-14				NR [9056863] (imputed)	N
1336	chr15	98494153	98494154	rs74031748	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	15q26.2	intergenic	rs74031748-A	NR	7E-6	(females)	0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1336	chr15	98504163	98504164	rs200944490	34680357	Oh JJ	2021-10-17	Cancers (Basel)	ARRDC4 and UBXN1: Novel Target Genes Correlated with Prostate Cancer Gleason Score.	High Gleason score in radical prostatectomy	122 cases, 719 controls	NA	15q26.2		rs200944490-?	NR	1E-6		6.459	[3.028-13.78]	Illumina [242186]	N
1336	chr15	98512430	98512431	rs61747226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.2		rs61747226-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1336	chr15	98518791	98518792	rs4965121	20634892	Calboli FC	2010-07-09	PLoS One	A genome-wide association study of neuroticism in a population-based sample.	Neuroticism	2,235 European ancestry individuals	NA	15q26.2	ARRDC4	rs4965121-?	0.38	1E-6		0.84	[0.51-1.17] unit decrease	Affymetrix [1705237] (imputed)	N
1336	chr15	98553308	98553309	rs555900871	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	15q26.3	AC144835.1	rs555900871-CT	0.9895	1E-6		0.258	[0.15-0.36] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1336	chr15	98559755	98559756	rs7495211	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q26.3	intergenic	rs7495211-?	NR	7E-6		0.268	[0.13-0.41] unit decrease	Illumina [at least 13000000] (imputed)	N
1337	chr15	98577593	98577594	rs28385404	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression x maternal smoking during pregnancy interaction	2,310 cases, 4,539 controls	NA	15q26.3	NR	rs28385404-?	NR	1E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
1337	chr15	98577593	98577594	rs28385404	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Depression	2,310 cases, 4,539 controls	NA	15q26.3	NR	rs28385404-?	NR	3E-6	(Dominant model)			Affymetrix [NR] (imputed)	N
1337	chr15	98606312	98606313	rs1993976	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	15q26.3	ARRDC4	rs1993976-A	0.39	8E-7	(univariate, arm)			Illumina [319818]	N
1338	chr15	98712451	98712452	rs62024995	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	15q26.3	LOC101927332	rs62024995-C	0.75	6E-8	(Hispanic)			Affymetrix, Illumina [14227402] (imputed)	N
1338	chr15	98715660	98715661	rs1480090	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	15q26.3	ARRDC4	rs1480090-C	0.49	7E-6		4.6	NR unit increase	Illumina [NR] (imputed)	N
1338	chr15	98719872	98719873	rs12901487	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	15q26.3	NR	rs12901487-?	NR	1E-6		0.6539	[0.48-0.83]	Illumina [NR] (imputed)	N
1338	chr15	98764846	98764847	rs1442808	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	15q26.3	LOC728459, FAM169B	rs1442808-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1338	chr15	98808110	98808111	rs6598351	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	15q26.3	FAM169B	rs6598351-T	NR	2E-8	(EA)	0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1338	chr15	98809421	98809422	rs12593656	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	15q26.3	FAM169B	rs12593656-T	0.157	4E-8		0.017	[0.011-0.023] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1339	chr15	98867147	98867148	rs8038591	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	15q26.3	FAM169B	rs8038591-A	0.103843	3E-9		0.0179654	[0.012-0.024] unit decrease	NR [13737936] (imputed)	N
1339	chr15	98868557	98868558	rs2310792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	15q26.3		rs2310792-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1339	chr15	98876028	98876029	rs970843	21935397	Paternoster L	2011-09-15	PLoS One	Genome-wide population-based association study of extremely overweight young adults--the GOYA study.	Obesity (extreme)	2,633 European ancestry extremely obese adult cases, 2,740 European ancestry controls	29,181 European ancestry individuals	15q26.3	FLJ39743	rs970843-C	NR	5E-6				Illumina [545349]	N
1340	chr15	99044416	99044417	rs28510513	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q26.3	NR	rs28510513-T	0.199101	1E-14		0.0302773	[0.023-0.038] unit decrease	NR [19129689] (imputed)	N
1340	chr15	99044776	99044777	rs79560051	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	15q26.3	NR	rs79560051-?	NR	3E-8				Illumina [7760689] (imputed)	N
1340	chr15	99072904	99072905	rs12719740	22354554	Thompson SD	2012-02-21	Arthritis Rheum	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	15q26.3	FAM169B, IGF1R	rs12719740-T	0.18	7E-7		1.15	[1.06-1.25]	Affymetrix [561137]	N
1340	chr15	99088452	99088453	rs73467599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	15q26.3	NR	rs73467599-C	0.199459	6E-15		0.018458	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1341	chr15	99090691	99090692	rs3803478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	15q26.3		rs3803478-A	NR	3E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1341	chr15	99090691	99090692	rs3803478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q26.3		rs3803478-A	0.198266	7E-17		0.023424242	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr15	99090691	99090692	rs3803478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	15q26.3		rs3803478-A	0.198242	2E-13		0.020681342	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1341	chr15	99090691	99090692	rs3803478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs3803478-A	0.243313	2E-15				Affymetrix, Illumina [23467995] (imputed)	N
1341	chr15	99095270	99095271	rs191817094	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	15q26.3	NR	rs191817094-A	NR	1E-6	(African)	1.2155	[0.72-1.71] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1341	chr15	99105516	99105517	rs28605724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs28605724-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1341	chr15	99161451	99161452	rs8035887	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	15q26.3	NR	rs8035887-?	NR	4E-7	(EA)	0.6866	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1341	chr15	99174827	99174828	rs12914479	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	15q26.3		rs12914479-C	0.6603	7E-9		1.0447733	[1.029326056-1.060452524]	Affymetrix, Illumina [NR] (imputed)	N
1341	chr15	99177594	99177595	rs7176647	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	15q26.3	Intergenic	rs7176647-C	0.402	3E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1341	chr15	99178273	99178274	rs2311313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	15q26.3		rs2311313-G	0.129128	9E-14		0.0322624	[0.024-0.041] unit decrease	Illumina [13479924] (imputed)	N
1341	chr15	99180204	99180205	rs9672558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q26.3		rs9672558-C	0.061464	1E-51		0.0639966	[0.056-0.072] unit decrease	Illumina [13479295] (imputed)	N
1341	chr15	99180204	99180205	rs9672558	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	FAM169B, IRAIN	rs9672558-?	NR	7E-63		0.10059936	[0.089-0.112] unit decrease	Illumina [27896057] (imputed)	N
1341	chr15	99181221	99181222	rs28456063	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	15q26.3	FAM169B-IGF1R	rs28456063-?	NR	4E-11		0.7	[0.48-0.92] unit decrease	Affymetrix [5682219] (imputed)	N
1341	chr15	99181662	99181663	rs4965425	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	15q26.3	NR	rs4965425-T	0.47	4E-9		0.019	[0.013-0.025] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1341	chr15	99182929	99182929	rs56937648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	RP11-35O15.1	rs56937648-A	0.8495	1E-11		0.0661	[0.047-0.085] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q26.3		rs7402939-T	0.376472	1E-8		0.0236583	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	15q26.3		rs7402939-T	0.376472	3E-8		0.0228208	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	15q26.3		rs7402939-T	0.376472	1E-8		0.023501	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	15q26.3		rs7402939-T	0.376515	2E-8		0.0229454	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	RP11-35O15.1	rs7402939-T	NR	2E-12		0.0207735	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
1341	chr15	99183875	99183876	rs7402939	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	15q26.3	NR	rs7402939-C	0.624	5E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1341	chr15	99186487	99186488	rs1573891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	RP11-35O15.1	rs1573891-C	NR	2E-11		0.0261511	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
1341	chr15	99186487	99186488	rs1573891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.3		rs1573891-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1341	chr15	99186487	99186488	rs1573891	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q26.3	NR	rs1573891-?	NR	2E-18		0.26621	[0.21-0.33] unit decrease	Affymetrix [7794483] (imputed)	N
1341	chr15	99186487	99186488	rs1573891	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	15q26.3	NR	rs1573891-?	NR	1E-14	(male)	0.37004	[0.28-0.46] unit decrease	Affymetrix [7794483] (imputed)	N
1341	chr15	99190600	99190601	rs8034564	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	RP11-35O15.1	rs8034564-G	NR	7E-13		0.0224652	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
1341	chr15	99192482	99192483	rs13379905	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	15q26.3	IGF1R	rs13379905-?	NR	2E-10		0.69	[0.47-0.91] unit decrease	Affymetrix [5682219] (imputed)	N
1341	chr15	99193268	99193269	rs7402982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	15q26.3		rs7402982-G	NR	9E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1341	chr15	99193268	99193269	rs7402982	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	15q26.3	IGF1R	rs7402982-A	0.42	1E-9		0.0231	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1341	chr15	99193275	99193276	rs7402983	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.3	IGF1R	rs7402983-A	0.3983	4E-23		0.0192	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1341	chr15	99193275	99193276	rs7402983	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q26.3	IGF1R	rs7402983-A	0.398141	2E-6		0.015434	[0.0091-0.0218] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1341	chr15	99193275	99193276	rs7402983	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q26.3	IGF1R	rs7402983-A	0.405097	3E-19		0.024135	[0.019-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.3		rs2871865-G	NR	2E-111		0.0483	[0.044-0.053] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	IGF1R	rs2871865-G	NR	8E-11		0.0286215	[0.02-0.037] unit decrease	Affymetrix [321016] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	IGF1R	rs2871865-G	NR	3E-12		0.0334781	[0.024-0.043] unit decrease	Affymetrix [323123] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q26.3	IGF1R	rs2871865-C	0.576	2E-10	(AA)	0.047	[0.033-0.061] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	15q26.3	IGF1R	rs2871865-C		3E-38				Affymetrix, Illumina [17972582] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	15q26.3	IGF1R	rs2871865-C	0.576	6E-6	(AA)	0.041	[0.023-0.059] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	15q26.3	IGF1R	rs2871865-C	0.576	6E-7	(AA)	0.06	[0.036-0.084] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.3	IGF1R	rs2871865-C	0.8841	3E-62		0.0493	[0.043-0.055] unit increase	Affymetrix [18391927] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q26.3	NR	rs2871865-G	0.115832	4E-10		0.0642994	[0.043-0.085] unit decrease	Affymetrix [17914406] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	15q26.3	NR	rs2871865-?	NR	2E-9		0.0423905	[0.029-0.056] unit decrease	Illumina [34656550] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2871865-?	NR	6E-119				NR [~ 8900000] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q26.3	IGF1R	rs2871865-C	0.92	6E-23		0.085	[0.061-0.109] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1341	chr15	99194895	99194896	rs2871865	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.3	IGF1R	rs2871865-C	0.88	3E-21		0.057	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1341	chr15	99196111	99196112	rs2017500	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q26.3	IGF1R	rs2017500-G	0.487045	2E-8		0.0112766	[0.0073-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1341	chr15	99196111	99196112	rs2017500	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	15q26.3	NR	rs2017500-A	0.513	8E-14		0.00810551	[0.006-0.0102] unit increase	NR [9732723] (imputed)	N
1341	chr15	99196111	99196112	rs2017500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2017500-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1341	chr15	99202874	99202875	rs8028620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q26.3		rs8028620-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1341	chr15	99204005	99204006	rs4966011	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q26.3	NR	rs4966011-A	NR	2E-10		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1341	chr15	99204100	99204101	rs8027457	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	15q26.3	NR	rs8027457-C	0.511	2E-9		0.015313777	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1341	chr15	99204482	99204483	rs6598539	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	15q26.3		rs6598539-T	0.489	5E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1341	chr15	99204482	99204483	rs6598539	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	15q26.3	IGF1R	rs6598539-T	0.4883	4E-9		0.012742009	[0.0085-0.017] unit decrease	Affymetrix [11514654] (imputed)	N
1341	chr15	99204482	99204483	rs6598539	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	15q26.3	NR	rs6598539-C	0.511	2E-9		0.00875411	[0.0059-0.0116] unit decrease	NR [9732723] (imputed)	N
1341	chr15	99205223	99205224	rs12914977	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	15q26.3		rs12914977-C	0.603	4E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1341	chr15	99205223	99205224	rs12914977	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	15q26.3	IGF1R	rs12914977-T	0.3908	2E-9		0.015834017	[0.011-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
1341	chr15	99210596	99210597	rs10902605	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	IGF1R	rs10902605-C	0.953	3E-10		0.0968	[0.067-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1342	chr15	99222508	99222509	rs56803094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	15q26.3		rs56803094-G	NR	2E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1342	chr15	99222508	99222509	rs56803094	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		15q26.3	IGF1R	rs56803094-A	0.773245	6E-9		0.00957693	[0.0064-0.0128] unit increase	Affymetrix [12370749]	N
1342	chr15	99222508	99222509	rs56803094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.3	NR	rs56803094-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1342	chr15	99222508	99222509	rs56803094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.3		rs56803094-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1342	chr15	99230161	99230162	rs58139454	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q26.3	NA	rs58139454-C	0.2216	3E-10		0.0145	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1342	chr15	99231104	99231105	rs62024476	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	IGF1R	rs62024476-?	NR	7E-9		0.020167124	[0.013-0.027] unit decrease	Illumina [27896057] (imputed)	N
1342	chr15	99231867	99231868	rs7170035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q26.3	NR	rs7170035-G	NR	1E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr15	99231867	99231868	rs7170035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q26.3	NR	rs7170035-G	NR	7E-11		0.0186	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr15	99234175	99234176	rs62024478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q26.3		rs62024478-T	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1342	chr15	99236275	99236276	rs11247367	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	15q26.3	IGF1R	rs11247367-G	0.9	7E-7		0.786	[0.48-1.1] unit increase	Illumina [6007542] (imputed)	N
1342	chr15	99240480	99240481	rs11630479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q26.3		rs11630479-A	NR	2E-26		0.0193	[0.016-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1342	chr15	99240480	99240481	rs11630479	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	15q26.3	IGF1R	rs11630479-G	0.698389	3E-7		0.016855	[0.01-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1342	chr15	99240480	99240481	rs11630479	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	15q26.3	IGF1R	rs11630479-G	0.702773	9E-7		0.013861	[0.0083-0.0194] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1342	chr15	99248040	99248041	rs4965426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	15q26.3	IGF1R	rs4965426-A	0.143412	1E-30		0.037156854	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1342	chr15	99248040	99248041	rs4965426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	15q26.3	IGF1R	rs4965426-A	0.1434	2E-36		0.040550534	[0.034-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1342	chr15	99248040	99248041	rs4965426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	15q26.3	NR	rs4965426-A	0.143531	3E-50		0.039275	[0.034-0.044] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1342	chr15	99248040	99248041	rs4965426	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	15q26.3	IGF1R	rs4965426-A	0.1428	1E-11		0.03543915	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1342	chr15	99248040	99248041	rs4965426	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	15q26.3	IGF1R	rs4965426-A	0.1429	2E-12		0.03651776	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1342	chr15	99248131	99248132	rs4966015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	15q26.3		rs4966015-T	NR	7E-31		0.029	[0.024-0.034] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1342	chr15	99248131	99248132	rs4966015	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	15q26.3		rs4966015-G	0.856	2E-19				Affymetrix [10369434] (imputed)	N
1342	chr15	99248131	99248132	rs4966015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	15q26.3	IGF1R	rs4966015-T	0.14347	1E-20		0.029887356	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1342	chr15	99248131	99248132	rs4966015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs4966015-T	0.165262	4E-55				Affymetrix, Illumina [24588908] (imputed)	N
1342	chr15	99249028	99249029	rs11858316	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	15q26.3	IGF1R	rs11858316-C	0.462	2E-9		0.107	[-0.07332-0.28732] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1342	chr15	99255959	99255960	rs12906223	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	15q26.3	IGF1R	rs12906223-G	0.6107	5E-8		0.0042	[0.0026-0.0058] unit increase	Affymetrix [~ 9500000] (imputed)	N
1342	chr15	99255959	99255960	rs12906223	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass	19,260 European ancestry individuals	NA	15q26.3	IGF1R	rs12906223-G	0.6107	5E-6		0.5455	[0.31-0.78] unit increase	Affymetrix [~ 9500000] (imputed)	N
1342	chr15	99255959	99255960	rs12906223	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	15q26.3	IGF1R	rs12906223-G	0.6107	4E-11		0.0333	[0.023-0.043] unit increase	Affymetrix [~ 9500000] (imputed)	N
1342	chr15	99258709	99258710	rs2018860	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	15q26.3	IGF1R	rs2018860-?	NR	3E-8		0.031	[0.019-0.043] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
1342	chr15	99263235	99263236	rs45579742	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q26.3	NR	rs45579742-C	0.3127	3E-11				NR [9056863] (imputed)	N
1342	chr15	99268029	99268030	rs932071	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q26.3		rs932071-A	0.3	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
1342	chr15	99268849	99268850	rs4965430	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	15q26.3	IGF1R	rs4965430-C	0.375	9E-8	(women)	0.04	[0.026-0.054] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1342	chr15	99268849	99268850	rs4965430	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	15q26.3	IGF1R	rs4965430-C	0.375	4E-9	(men)	0.045	[0.029-0.061] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1342	chr15	99268849	99268850	rs4965430	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	15q26.3	IGF1R	rs4965430-C	0.386	1E-10		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1342	chr15	99269877	99269878	rs28657002	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs28657002-?	NR	4E-10		0.02585	[0.018-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1342	chr15	99271134	99271135	rs6598541	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	15q26.3	IGF1R	rs6598541-A	0.3635	4E-12		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1342	chr15	99271134	99271135	rs6598541	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	15q26.3	IGF1R	rs6598541-A	0.362	1E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1342	chr15	99271134	99271135	rs6598541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q26.3	NR	rs6598541-G	0.641363	7E-11		0.012571	[0.0088-0.0163] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1342	chr15	99271134	99271135	rs6598541	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	15q26.3	IGF1R	rs6598541-A		4E-17		0.044	[0.034-0.054] mg/dl increase	NR [NR] (imputed)	N
1342	chr15	99271134	99271135	rs6598541	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	15q26.3	IGF1R	rs6598541-A	0.36	5E-15		0.043	[0.031-0.055] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1342	chr15	99273074	99273075	rs7166287	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	15q26.3		rs7166287-C	0.47	1E-20		0.0545	increase	NR [7104359] (imputed)	N
1342	chr15	99273074	99273075	rs7166287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs7166287-T	0.603458	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1342	chr15	99274325	99274326	rs4966019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	15q26.3		rs4966019-T	NR	1E-70		0.0323	[0.029-0.036] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1342	chr15	99274325	99274326	rs4966019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	15q26.3		rs4966019-T	0.489675	4E-16		0.0287987	[0.022-0.036] unit decrease	Illumina [13475706] (imputed)	N
1342	chr15	99274325	99274326	rs4966019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	15q26.3		rs4966019-T	NR	5E-29		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1342	chr15	99274325	99274326	rs4966019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	15q26.3		rs4966019-T	NR	1E-30		0.0225	[0.019-0.026] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1342	chr15	99274325	99274326	rs4966019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	15q26.3		rs4966019-T	0.489804	2E-11		0.0227777	[0.016-0.029] unit decrease	Illumina [13478792] (imputed)	N
1342	chr15	99276520	99276521	rs59646751	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	15q26.3	NR	rs59646751-G	0.6929	3E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1342	chr15	99276520	99276521	rs59646751	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.3	NR	rs59646751-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1342	chr15	99276520	99276521	rs59646751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	15q26.3	IGF1R	rs59646751-T	0.3043	3E-13		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1342	chr15	99276520	99276521	rs59646751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	15q26.3	IGF1R	rs59646751-T	0.2619	8E-6		0.0034	[0.0018-0.005] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1342	chr15	99281187	99281188	rs62024526	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	15q26.3	NR	rs62024526-C	0.7574	5E-8		0.0558	[0.036-0.076] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1342	chr15	99284073	99284074	rs2871974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	15q26.3	IGF1R	rs2871974-T	0.639079	3E-10		0.014539963	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1342	chr15	99284073	99284074	rs2871974	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	15q26.3	IGF1R	rs2871974-C	0.36	3E-15		0.042	[0.032-0.052] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	8E-16	(158 ms)	0.0443849	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	5E-17	(170 ms)	0.0458673	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	5E-17	(156 ms)	0.0452525	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	5E-14	(182 ms)	0.0415473	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	4E-8	(114 ms)	0.0296336	[0.018-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	4E-17	(154 ms)	0.0454628	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	4E-13	(144 ms)	0.0405091	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	4E-11	(190 ms)	0.0377646	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	3E-14	(162 ms)	0.0413404	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	3E-14	(160 ms)	0.0417603	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	3E-12	(192 ms)	0.0387842	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	3E-11	(128 ms)	0.0360541	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	3E-11	(118 ms)	0.0364291	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	2E-9	(204 ms)	0.0339003	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	2E-14	(174 ms)	0.0434127	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	2E-14	(146 ms)	0.0413478	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-17	(152 ms)	0.0464325	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-15	(172 ms)	0.0447305	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-15	(164 ms)	0.0436332	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-12	(194 ms)	0.0399427	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-11	(126 ms)	0.0366113	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-10	(130 ms)	0.0354714	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.368113	1E-10	(116 ms)	0.0350609	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1342	chr15	99284679	99284680	rs4966020	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	15q26.3	IGF1R	rs4966020-G	0.369121	8E-10		0.206362	[0.14-0.27] ms decrease	Illumina [162199]	N
1342	chr15	99284679	99284680	rs4966020	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	15q26.3	IGF1R	rs4966020-G	0.362171713441124	3E-9		0.2788414	[0.19-0.37] ms decrease	Illumina [213295]	N
1342	chr15	99284679	99284680	rs4966020	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	15q26.3	IGF1R	rs4966020-A	0.58	1E-12	(SAI QRST)	0.08	[0.058-0.102] unit increase	Affymetrix, Illumina [at least 9117794] (imputed)	N
1342	chr15	99285379	99285380	rs41350349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q26.3	NR	rs41350349-A	NR	1E-12		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99285379	99285380	rs41350349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q26.3	NR	rs41350349-A	NR	4E-27		0.0326	[0.027-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99285379	99285380	rs41350349	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q26.3	NR	rs41350349-A	NR	9E-24		0.0304	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99286979	99286980	rs61168554	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	15q26.3		rs61168554-A	NR	4E-6		0.00440138	[0.0026-0.0062] years decrease	NR [7400000] (imputed)	N
1342	chr15	99286979	99286980	rs61168554	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	15q26.3		rs61168554-A	NR	4E-8		0.018575814	[0.012-0.025] years increase	NR [7400000] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	15q26.3	NR	rs12908437-T	0.36	2E-64		0.0323	[0.029-0.036] unit increase	NR [NR]	N
1342	chr15	99287374	99287375	rs12908437	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q26.3	IGF1R	rs12908437-T	0.4326	4E-46		0.0448	[0.039-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	15q26.3	IGF1R	rs12908437-T	0.3761	2E-30		0.045764	[0.038-0.054] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q26.3	NR	rs12908437-T	0.5738	1E-28	(women)	0.0506	[0.042-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	15q26.3	NR	rs12908437-T	0.5612	2E-13	(men)	0.0369	[0.027-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	15q26.3	IGF1R	rs12908437-T	0.4282	5E-19		0.0062	[0.0048-0.0076] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q26.3	IGF1R	rs12908437-T	0.39	1E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1342	chr15	99287374	99287375	rs12908437	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	15q26.3	IGF1R	rs12908437-T	0.37	2E-10	(EA)	1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1342	chr15	99288740	99288741	rs72767997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	15q26.3		rs72767997-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1342	chr15	99289606	99289607	rs59350108	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs59350108-?	NR	2E-13		0.03203	[0.024-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1342	chr15	99289637	99289638	rs2137683	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	15q26.3	IGF1R	rs2137683-G	0.5196	2E-12		7.055	NR z score increase	Illumina [26237160] (imputed)	N
1342	chr15	99291405	99291406	rs60710235	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	15q26.3	NR	rs60710235-?	NR	6E-6		1.7358098	[1.37-2.22]	Illumina [13976150] (imputed)	N
1342	chr15	99293055	99293056	rs6598542	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	15q26.3	IGF1R	rs6598542-A	0.692	4E-14	(EA)	0.03142857	[0.023-0.04] unit decrease	Illumina [1986983] (imputed)	N
1342	chr15	99293055	99293056	rs6598542	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	15q26.3	IGF1R	rs6598542-A	0.5004	2E-15	(Japanese)	0.0321	[0.024-0.04] unit decrease	Illumina [1986983] (imputed)	N
1342	chr15	99295569	99295570	rs4966024	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	15q26.3	IGF1R	rs4966024-A	0.486	4E-16	(Japanese)	0.033	[0.025-0.041] unit decrease	Illumina [5864938] (imputed)	N
1342	chr15	99295649	99295650	rs12911273	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	15q26.3	IGF1R	rs12911273-T	0.4853	4E-16	(East Asian)	0.048	[0.036-0.06] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1342	chr15	99296655	99296656	rs7182976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	15q26.3	IGF1R	rs7182976-A	0.565651	5E-12		0.015814958	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1342	chr15	99296655	99296656	rs7182976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	15q26.3	NR	rs7182976-C	0.436965	1E-13		0.014496	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1342	chr15	99296655	99296656	rs7182976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	15q26.3		rs7182976-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1342	chr15	99301534	99301535	rs10794486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	15q26.3		rs10794486-A	0.474625	6E-14		0.0213568	[0.016-0.027] unit decrease	Illumina [13478778] (imputed)	N
1342	chr15	99301534	99301535	rs10794486	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs10794486-?	NR	3E-13		0.02708	[0.02-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1342	chr15	99302581	99302582	rs28415045	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	15q26.3	IGF1R	rs28415045-G	NR	6E-6		0.106984	[0.061-0.153] unit decrease	Illumina [at least 950000] (imputed)	N
1342	chr15	99309541	99309542	rs4966025	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs4966025-?	NR	2E-10		0.02493	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1342	chr15	99314620	99314621	rs12437561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	15q26.3	NR	rs12437561-T	NR	3E-10		0.0211	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99314620	99314621	rs12437561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	15q26.3	NR	rs12437561-T	NR	2E-28		0.037	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99314620	99314621	rs12437561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q26.3	NR	rs12437561-T	NR	6E-10		0.0207	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1342	chr15	99314620	99314621	rs12437561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q26.3	NR	rs12437561-T	NR	3E-32		0.0396	[0.033-0.046] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99314620	99314621	rs12437561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	15q26.3	NR	rs12437561-T	NR	5E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1342	chr15	99319806	99319807	rs870306	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	15q26.3	NR	rs870306-G	0.240383055	3E-7		0.20160586	[0.12-0.28] unit increase	Affymetrix [536506]	N
1342	chr15	99321746	99321747	rs907801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	15q26.3	NR	rs907801-C	NR	4E-10		0.0202	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1343	chr15	99366408	99366409	rs79826452	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	15q26.3	IGF1R	rs79826452-A	0.89	3E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1343	chr15	99395833	99395834	rs8035410	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.3	IGF1R	rs8035410-C	0.8351	2E-23		0.0252	[0.02-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1343	chr15	99396693	99396694	rs2684777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	IGF1R	rs2684777-C	NR	4E-8		0.0189149	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
1343	chr15	99396693	99396694	rs2684777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2684777-?	NR	1E-25				NR [~ 8900000] (imputed)	N
1343	chr15	99429748	99429749	rs4966036	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	15q26.3	NR	rs4966036-C	0.219	6E-6	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1343	chr15	99433375	99433376	rs1357112	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	15q26.3	LOC145814	rs1357112-?	NR	8E-6	(SM 24:1)	0.15561078	[0.087-0.224] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1343	chr15	99435379	99435379	rs1026050355	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	15q26.3	NR	rs1026050355-C	0.0122	5E-10	(BPNT1)	0.04424	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr15	99446631	99446632	rs4966038	27506219	Wang W	2016-08-09	Reprod Sci	Pooling-Based Genome-Wide Association Study Identifies Risk Loci in the Pathogenesis of Ovarian Endometrioma in Chinese Han Women.	Endometriosis	50 Chinese Han ancestry cases, 50 Chinese Han ancestry uterine myoma or hydrosalpinx controls	1,466 Chinese Han ancestry cases, 1,410 Chinese Han ancestry uterine myoma or hydrosalpinx controls	15q26.3	IGF1R	rs4966038-?	NR	2E-9		1.378	[1.242-1.529]	Affymetrix [906600]	N
1343	chr15	99458901	99458902	rs28612945	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	15q26.3	IGF1R	rs28612945-C	0.79	6E-9		0.0062	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1343	chr15	99458901	99458902	rs28612945	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	15q26.3	IGF1R	rs28612945-C	0.79	6E-7		0.0053	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
1343	chr15	99459326	99459327	rs143193096	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs143193096-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1343	chr15	99459326	99459327	rs143193096	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs143193096-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1343	chr15	99459326	99459327	rs143193096	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	15q26.3	IGF1R	rs143193096-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1343	chr15	99463734	99463735	rs28705253	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	15q26.3	NR	rs28705253-A	0.2358	4E-6		0.1962	[0.11-0.28] unit decrease	Illumina [NR] (imputed)	N
1344	chr15	99491539	99491540	rs2684790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	IGF1R	rs2684790-A	NR	4E-9		0.0233702	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
1344	chr15	99498878	99498879	rs8033670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs8033670-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1344	chr15	99500587	99500588	rs150801101	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	15q26.3	IGF1R	rs150801101-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1344	chr15	99501580	99501581	rs702497	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	15q26.3	NR	rs702497-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1344	chr15	99504436	99504437	rs2684788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	IGF1R, RP11-654A16.3	rs2684788-T	NR	5E-8		0.0169104	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1344	chr15	99504436	99504437	rs2684788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs2684788-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1344	chr15	99504842	99504843	rs2654980	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	15q26.3	IGF1R	rs2654980-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1344	chr15	99504842	99504843	rs2654980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2654980-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1344	chr15	99508179	99508180	rs2312491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	15q26.3		rs2312491-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1344	chr15	99511872	99511873	rs2715423	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	15q26.3	NA	rs2715423-A	0.2805	2E-9		0.0115	[0.0078-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1344	chr15	99513230	99513231	rs733710	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	PGPEP1L	rs733710-?	NR	7E-13		0.031020515	[0.023-0.039] unit decrease	Illumina [27896057] (imputed)	N
1344	chr15	99519258	99519259	rs34303684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.3		rs34303684-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1344	chr15	99550375	99550376	rs80126209	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	15q26.3	RP11-654A16.3, PGPEP1L	rs80126209-A	0.0569	9E-6		0.0645	[0.036-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1344	chr15	99550929	99550930	rs11852530	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	RP11-654A16.3, PGPEP1L	rs11852530-C	NR	5E-12		0.0230457	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
1344	chr15	99562679	99562680	rs2663127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	RP11-654A16.3	rs2663127-G	NR	3E-10		0.0191533	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1344	chr15	99564030	99564031	rs2663124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2663124-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1344	chr15	99584065	99584066	rs8023294	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q26.3	NR	rs8023294-?	NR	1E-7			[NR]	Illumina [5779266] (imputed)	N
1344	chr15	99609015	99609016	rs2663129	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	15q26.3	NR	rs2663129-?	NR	1E-23		10.023	NR z score decrease	Illumina [at least 830937] (imputed)	N
1345	chr15	99616719	99616720	rs1670273	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	15q26.3	DMN, SYNM	rs1670273-C	NR	8E-6		1.08	[0.91-1.28]	Affymetrix [~ 8000000] (imputed)	N
1345	chr15	99618167	99618168	rs8032194	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	15q26.3	SYNM	rs8032194-G	NR	7E-6		0.120195314	[0.068-0.173] unit decrease	Affymetrix [9576485] (imputed)	N
1345	chr15	99686950	99686951	rs8039637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	15q26.3		rs8039637-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1346	chr15	99775680	99775681	rs183047346	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	15q26.3	TTC23	rs183047346-C	5.0E-4	7E-6		4.07512	NR	Affymetrix, Illumina [30341632] (imputed)	N
1346	chr15	99830321	99830322	rs7174369	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	15q26.3	MEF2A, IGF1R	rs7174369-?		2E-6		2.586	[1.64-3.53] unit increase	Illumina [~ 4900000] (imputed)	N
1346	chr15	99847209	99847210	rs2136629	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	15q26.3	NR	rs2136629-T	0.07711	7E-6		4.50356	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1347	chr15	99924856	99924857	rs11857349	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	15q26.3	LRRC28	rs11857349-G	0.05841	3E-6		4.57624	[2.64-6.51] unit decrease	Illumina [6716580] (imputed)	N
1347	chr15	99979158	99979159	rs8029754	28598419	Hong X	2017-06-09	Nat Commun	Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.	Gestational age at birth (maternal effect)	698 African American preterm birth mothers, 1,035 African American term birth mothers	NA	15q26.3	LRRC28, MEF2A	rs8029754-G	0.21	2E-8		0.87	[0.58-1.16] unit decrease	Illumina [13317377] (imputed)	N
1347	chr15	99992007	99992008	rs11637339	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	15q26.3	LRRC28, MEF2A	rs11637339-C	NR	6E-6		1.184	[NR]	Illumina [10863230] (imputed)	N
1347	chr15	99995883	99995884	rs28479400	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	15q26.3	intergenic	rs28479400-G	0.9494	2E-6	(Case/control)	0.7864	[0.46-1.11] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1347	chr15	99998708	99998709	rs4965500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs4965500-G	0.67505	1E-12				Affymetrix, Illumina [24653286] (imputed)	N
1347	chr15	99998708	99998709	rs4965500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	15q26.3	NR	rs4965500-G	0.76866	1E-12		0.015697	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1347	chr15	99998708	99998709	rs4965500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	15q26.3	NR	rs4965500-G	0.7687	8E-13		0.01585	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1347	chr15	99998762	99998763	rs11635896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs11635896-C	0.677316	6E-14				Affymetrix, Illumina [24558453] (imputed)	N
1347	chr15	100003929	100003930	rs10083662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	15q26.3		rs10083662-A	NR	6E-11		0.0116	[0.0081-0.0151] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1347	chr15	100003929	100003930	rs10083662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	15q26.3		rs10083662-A	NR	8E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1348	chr15	100047382	100047383	rs8038589	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	15q26.3	NR	rs8038589-T	0.0206	3E-6		0.9179	[0.54-1.3] unit decrease	Illumina [~ 600000] (imputed)	N
1348	chr15	100051135	100051136	rs8026614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	15q26.3	MEF2A	rs8026614-T	0.471582	3E-12		0.0156138195	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr15	100051135	100051136	rs8026614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q26.3	MEF2A	rs8026614-T	0.471576	2E-9		0.013492068	[0.0091-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1348	chr15	100112467	100112468	rs2581468	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	15q26.3	MEF2A	rs2581468-T	0.8093	8E-12		0.2435	[0.17-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
1348	chr15	100117314	100117315	rs11247113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	15q26.3		rs11247113-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1349	chr15	100145223	100145224	rs4965529	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	15q26.3	MEF2A	rs4965529-T	0.1705	1E-14		0.2497	[0.19-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1349	chr15	100200682	100200683	rs78350132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	15q26.3		rs78350132-C	NR	1E-8		0.0159	[0.01-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1349	chr15	100200682	100200683	rs78350132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	15q26.3		rs78350132-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1349	chr15	100229259	100229260	rs325393	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	15q26.3		rs325393-?	NR	2E-9		0.0136497	[0.0092-0.0181] unit decrease	NR [6912294] (imputed)	N
1349	chr15	100229760	100229761	rs325384	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	15q26.3		rs325384-C	0.715795	10E-11		0.014	[0.01-0.018] unit decrease	NR [7250403] (imputed)	N
1349	chr15	100264517	100264518	rs2123926	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q26.3	LYSMD4	rs2123926-C	0.93	1E-6	(AA)	0.059	NR unit increase	Illumina [NR] (imputed)	N
1349	chr15	100265724	100265725	rs11247124	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	15q26.3	LYSMD4	rs11247124-A	0.2373	2E-6		0.009	[0.0053-0.0127] unit increase	Affymetrix [~ 7740000] (imputed)	N
1349	chr15	100265724	100265725	rs11247124	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q26.3	LYSMD4	rs11247124-A	0.93	2E-6	(AA)	0.058	NR unit increase	Illumina [NR] (imputed)	N
1349	chr15	100267321	100267322	rs78472555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q26.3	LYSMD4	rs78472555-C	0.86	2E-6	(AA)	0.042	NR unit increase	Illumina [NR] (imputed)	N
1350	chr15	100271252	100271253	rs12185079	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	15q26.3	LYSMD4	rs12185079-T	0.828	4E-6	(AA)	0.038	NR unit increase	Illumina [NR] (imputed)	N
1350	chr15	100275109	100275110	rs6598265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs6598265-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1350	chr15	100297662	100297663	rs1993293	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	15q26.3	LYSMD4	rs1993293-A	0.73	4E-6	(AA)	0.17	[0.092-0.248] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1350	chr15	100299238	100299239	rs6598266	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	15q26.3	LYSMD4, C15orf51	rs6598266-A	0.1427493	3E-6	(% improvement - SSRI treated - 12 weeks)	0.2543	[0.15-0.36] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
1350	chr15	100336989	100336990	rs2924767	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	15q26.3	NR	rs2924767-A	0.1586	2E-8		0.7996	[0.37-1.23] unit increase	Illumina [at least 567677] (imputed)	N
1350	chr15	100357434	100357435	rs1823874	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	15q26.3	NR	rs1823874-C	0.428499305840392	3E-6	(IGP33)	0.1478	[0.086-0.209] unit increase	Illumina [~ 2500000] (imputed)	N
1350	chr15	100383999	100384000	rs77379230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs77379230-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1351	chr15	100424604	100424605	rs7182621	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	15q26.3	Intergenic	rs7182621-?	NR	8E-6		1.3601741	[NR]	Affymetrix [492217] (imputed)	N
1351	chr15	100473697	100473698	rs2573647	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	15q26.3	NR	rs2573647-A	0.193	5E-6		0.2346	[0.14-0.33] unit increase	Illumina [up to 730525]	N
1351	chr15	100491881	100491882	rs2581360	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	15q26.3	NR	rs2581360-A	0.253	9E-6		0.2328	[0.13-0.33] unit increase	Illumina [up to 730525]	N
1351	chr15	100492340	100492341	rs2581357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	15q26.3		rs2581357-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1351	chr15	100511003	100511004	rs9328573	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	15q26.3	ADAMTS17	rs9328573-G	0.48	9E-6		0.053	[0.029-0.077] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1351	chr15	100513116	100513117	rs2727195	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs2727195-?	NR	2E-11		0.03522038	[0.025-0.046] unit decrease	Illumina [27896057] (imputed)	N
1351	chr15	100513157	100513158	rs2573625	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	15q26.3	ADAMTS17	rs2573625-T	0.672	6E-20		0.029	[0.023-0.035] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1351	chr15	100514062	100514063	rs2581348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	CTD-3076O17.1, ADAMTS17	rs2581348-C	NR	3E-10		0.0203928	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1351	chr15	100514062	100514063	rs2581348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs2581348-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1351	chr15	100514613	100514614	rs2573652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q26.3		rs2573652-C	0.478237	1E-20		0.0187147	[0.015-0.023] unit increase	Illumina [13479295] (imputed)	N
1351	chr15	100514613	100514614	rs2573652	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs2573652-?	NR	4E-20		0.026209883	[0.021-0.032] unit increase	Illumina [27896057] (imputed)	N
1351	chr15	100514613	100514614	rs2573652	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	15q26.3	ADAMTS17	rs2573652-T	0.44	1E-13		0.036	[0.024-0.048] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1352	chr15	100533311	100533312	rs145482150	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs145482150-?	NR	2E-19		0.2953047	[0.23-0.36] unit decrease	Illumina [27896057] (imputed)	N
1352	chr15	100543393	100543394	rs11636084	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs11636084-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1352	chr15	100584738	100584739	rs4965272	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	15q26.3	ADAMTS17, RNA5SP402, AC022819.3, CTD-3076O17.1	rs4965272-T	0.74	6E-6				Illumina [2327020] (imputed)	N
1352	chr15	100592444	100592444	rs397807524	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs397807524-?	NR	4E-13		0.022259496	[0.016-0.028] unit increase	Illumina [27896057] (imputed)	N
1352	chr15	100646978	100646979	rs8041815	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	15q26.3	ADAMTS17	rs8041815-?	NR	3E-6	(Hispanic/Latino)	0.02437	[0.012-0.037] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1352	chr15	100646978	100646979	rs8041815	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	15q26.3	ADAMTS17	rs8041815-?	NR	1E-9		0.006063	[0.002-0.0101] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1352	chr15	100650291	100650292	rs57545798	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	15q26.3	ADAMTS17	rs57545798-?	NR	5E-6		0.139	[0.068-0.21] unit decrease	Illumina [at least 13000000] (imputed)	N
1352	chr15	100660988	100660989	rs72770234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs72770234-A	NR	2E-15		0.0463854	[0.035-0.058] unit decrease	Affymetrix [321114] (imputed)	N
1352	chr15	100660988	100660989	rs72770234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs72770234-A	NR	6E-20		0.058023	[0.046-0.07] unit decrease	Affymetrix [321114] (imputed)	N
1352	chr15	100660988	100660989	rs72770234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs72770234-A	NR	9E-20		0.0525178	[0.041-0.064] unit decrease	Affymetrix [321016] (imputed)	N
1352	chr15	100660988	100660989	rs72770234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs72770234-A	NR	2E-14		0.0480826	[0.036-0.06] unit decrease	Affymetrix [323123] (imputed)	N
1353	chr15	100672212	100672213	rs200327256	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	15q26.3		rs200327256-?	NR	4E-9		0.355656	[0.24-0.47] unit decrease	NR [9800000] (imputed)	N
1353	chr15	100672407	100672408	rs149578709	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs149578709-?	NR	2E-17		0.057244446	[0.044-0.07] unit decrease	Illumina [27896057] (imputed)	N
1353	chr15	100678838	100678839	rs8034746	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs8034746-C	0.949361	2E-8		0.104286	[0.064-0.145] decrease	Affymetrix [11014269] (imputed)	N
1353	chr15	100681845	100681846	rs55752727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs55752727-A	NR	3E-8		0.0186739	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100687966	100687967	rs4246302	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	15q26.3	ADAMTS17	rs4246302-A	0.6969	5E-6		0.0173	[0.0099-0.0247] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1353	chr15	100687966	100687967	rs4246302	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.3	ADAMTS17	rs4246302-A	0.6809	6E-9	(EA)	0.0216	[0.014-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1353	chr15	100687966	100687967	rs4246302	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.3	ADAMTS17	rs4246302-A	0.6809	3E-7	(EA,women)	0.0248	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	15q26.3		rs72755233-A	NR	8E-11		0.0211	[0.015-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.3		rs72755233-A	NR	1E-134		0.0642	[0.059-0.069] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	15q26.3		rs72755233-A	NR	2E-10		0.1095	[0.076-0.143] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs72755233-A	NR	9E-31		0.0518359	[0.043-0.061] unit decrease	Affymetrix [321114] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs72755233-A	NR	1E-35		0.0606071	[0.051-0.07] unit decrease	Affymetrix [321114] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs72755233-A	NR	3E-38		0.0575146	[0.049-0.066] unit decrease	Affymetrix [321016] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs72755233-A	NR	8E-30		0.0549049	[0.045-0.064] unit decrease	Affymetrix [323123] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs72755233-A	NR	2E-10		0.028546	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs72755233-A	NR	5E-11		0.0321347	[0.023-0.042] unit decrease	Affymetrix [323858] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	15q26.3		rs72755233-G	0.88943	8E-54		0.217251	[0.19-0.25] decrease	Affymetrix [11014269] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	15q26.3	ADAMTS17	rs72755233-G	0.889	1E-95		0.234	[0.21-0.26] unit decrease	Affymetrix [12000000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	15q26.3	ADAMTS17	rs72755233-G	0.888558	2E-15		0.0176324	[0.013-0.022] unit decrease	Affymetrix [12370749]	N
1353	chr15	100692952	100692953	rs72755233	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q26.3	ADAMTS17	rs72755233-A	0.108	4E-10		4.083	[2.81-5.36] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	15q26.3	NR	rs72755233-A	0.111059	4E-11		0.0695253	[0.048-0.091] unit increase	Affymetrix [17914406] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs72755233-?	NR	1E-71				Affymetrix [~ 8270000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	15q26.3	NR	rs72755233-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	15q26.3	ADAMTS17	rs72755233-A	0.111	5E-8		0.23	[0.15-0.32] mm Hg increase	Affymetrix [NR] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	15q26.3	ADAMTS17	rs72755233-?	NR	1E-8		0.16	unit increase	Illumina [NR]	N
1353	chr15	100692952	100692953	rs72755233	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	15q26.3	ADAMTS17	rs72755233-A	0.112	2E-15		1.18	[1.13-1.22]	Affymetrix [84000000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	5E-53	(females)	0.07978	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	2E-40		0.05284	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	8E-26		0.04174	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	2E-36	(females)	0.0646	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	5E-18		0.03345	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	4E-14	(males)	0.0181	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs72755233-A	0.107077	1E-17	(females)	0.04615	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs72755233-?	NR	3E-256				NR [~ 8900000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	15q26.3		rs72755233-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	15q26.3	ADAMTS17	rs72755233-G	0.8902	3E-45		0.305	[0.26-0.35] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	15q26.3	ADAMTS17	rs72755233-?	NR	1E-21		0.23	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1353	chr15	100692952	100692953	rs72755233	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	ADAMTS17	rs72755233-A	0.1115	2E-12		0.082	[0.059-0.105] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1353	chr15	100693512	100693513	rs28538685	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	15q26.3	NR	rs28538685-T		7E-6		3.5474	[2-5.09] unit decrease	Illumina [12759548] (imputed)	N
1353	chr15	100694856	100694857	rs12912546	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	ADAMTS17	rs12912546-A	0.6517	3E-6		0.0337	[0.02-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1353	chr15	100695346	100695347	rs8024690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs8024690-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1353	chr15	100723436	100723437	rs76301628	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs76301628-?	NR	4E-8		0.02040487	[0.013-0.028] unit decrease	Illumina [27896057] (imputed)	N
1353	chr15	100728662	100728663	rs2086452	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	15q26.3	ADAMTS17	rs2086452-C	NR	1E-6		1.35	[1.19-1.52]	Illumina [698968]	N
1353	chr15	100735351	100735352	rs8025049	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	15q26.3	ADAMTS17	rs8025049-?		5E-6				Illumina [4322238] (imputed)	N
1353	chr15	100747682	100747683	rs79790072	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	ADAMTS17	rs79790072-T	0.0554	9E-6		0.0669	[0.038-0.096] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1353	chr15	100750870	100750871	rs8037367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs8037367-C	NR	5E-8		0.0171883	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100756406	100756407	rs12901204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs12901204-A	NR	4E-10		0.0206376	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100756591	100756592	rs8025628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs8025628-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1353	chr15	100758384	100758385	rs4965593	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	15q26.3	ADAMTS17	rs4965593-C	0.32	7E-10		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1353	chr15	100759613	100759614	rs4965598	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	15q26.3	ADAMTS17	rs4965598-T	0.68	4E-13		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1353	chr15	100760510	100760511	rs11247168	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs11247168-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1353	chr15	100761189	100761190	rs4548838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4548838-T	NR	2E-15		0.0247716	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100761189	100761190	rs4548838	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4548838-T	NR	4E-9		0.0181778	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1353	chr15	100762010	100762011	rs12591128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs12591128-G	NR	4E-8		0.0185545	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1353	chr15	100763823	100763824	rs4246307	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.3	ADAMTS17	rs4246307-A	0.4929	4E-8	(EA)	0.0238	[0.015-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1353	chr15	100763823	100763824	rs4246307	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	15q26.3	ADAMTS17	rs4246307-A	0.4929	1E-6	(EA,men)	0.0318	[0.019-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1353	chr15	100765384	100765385	rs4965600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs4965600-G	NR	8E-9		0.0169224	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100765384	100765385	rs4965600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4965600-G	NR	6E-15		0.0247985	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100765384	100765385	rs4965600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs4965600-G	NR	9E-9		0.0167134	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1353	chr15	100769859	100769860	rs4965602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4965602-A	NR	2E-9		0.0207517	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1353	chr15	100782896	100782897	rs7180912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs7180912-T	NR	2E-10		0.0201623	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1353	chr15	100783526	100783527	rs12324426	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	15q26.3	ADAMTS17	rs12324426-G	NR	8E-6		0.7402	[0.41-1.07] unit increase	Illumina [4774020] (imputed)	N
1353	chr15	100786270	100786271	rs4533267	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	15q26.3	ADAMTS17	rs4533267-A	0.28	3E-8		5.6	[3.64-7.56] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1353	chr15	100794362	100794363	rs4369638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs4369638-?	NR	1E-90				NR [~ 8900000] (imputed)	N
1354	chr15	100795371	100795372	rs4467054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4467054-G	NR	2E-8		0.0174445	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100795371	100795372	rs4467054	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs4467054-?	NR	1E-17		0.02672004	[0.021-0.033] unit decrease	Illumina [27896057] (imputed)	N
1354	chr15	100800048	100800049	rs28583508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs28583508-G	NR	6E-11		0.0197718	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100800048	100800049	rs28583508	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs28583508-?	NR	6E-23				Affymetrix [~ 8270000] (imputed)	N
1354	chr15	100800839	100800840	rs4988781	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs4988781-A	0.325729	7E-21	(females)	0.0312	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1354	chr15	100800839	100800840	rs4988781	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs4988781-A	0.325729	2E-15		0.02103	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1354	chr15	100800839	100800840	rs4988781	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs4988781-A	0.325729	9E-14	(females)	0.02497	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1354	chr15	100800839	100800840	rs4988781	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs4988781-A	0.325729	7E-12		0.01871	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1354	chr15	100800839	100800840	rs4988781	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	15q26.3	ADAMTS17	rs4988781-A	0.325729	7E-6	(females)	0.01527	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1354	chr15	100801441	100801442	rs4965612	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	ADAMTS17	rs4965612-A	0.3144	3E-7		0.0381	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1354	chr15	100802033	100802034	rs6598317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs6598317-C	NR	2E-12		0.022657	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100802033	100802034	rs6598317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs6598317-C	NR	6E-11		0.0192508	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1354	chr15	100806645	100806646	rs4965617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs4965617-G	NR	6E-10		0.0194811	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100810234	100810235	rs8039762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs8039762-G	NR	6E-9		0.0164623	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1354	chr15	100810358	100810359	rs8042085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs8042085-A	NR	2E-11		0.0207155	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1354	chr15	100810910	100810911	rs12901091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs12901091-C	NR	5E-11		0.0190734	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100810910	100810911	rs12901091	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs12901091-C	NR	6E-10		0.0178081	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1354	chr15	100811935	100811936	rs11632934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs11632934-T	NR	1E-8		0.0178402	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1354	chr15	100821646	100821647	rs7497712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs7497712-C	NR	2E-8		0.0184023	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1354	chr15	100834722	100834723	rs6598322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	ADAMTS17	rs6598322-T	NR	4E-9		0.0182356	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1354	chr15	100837828	100837829	rs8037502	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	15q26.3	NR	rs8037502-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1354	chr15	100847359	100847360	rs11247185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	15q26.3	ADAMTS17	rs11247185-G	NR	6E-10		0.0177879	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1354	chr15	100854492	100854493	rs28411867	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	ADAMTS17	rs28411867-?	NR	1E-12		0.021834549	[0.016-0.028] unit decrease	Illumina [27896057] (imputed)	N
1355	chr15	100954891	100954892	rs144174173	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	15q26.3	NR	rs144174173-?	NR	6E-6		0.1452	[0.082-0.208] unit increase	Illumina [at least 560000] (imputed)	N
1355	chr15	100969380	100969381	rs72757283	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Childhood body mass index	828 Mexican-Mestizo ancestry individuals	NA	15q26.3	CERS3	rs72757283-C	0.02	2E-8		3.4	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
1355	chr15	100975026	100975027	rs58671886	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs58671886-G	0.904005	6E-11		0.105609	[0.075-0.136] increase	Affymetrix [11014269] (imputed)	N
1356	chr15	101073443	101073444	rs80332023	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	15q26.3	CERS3, LASS3	rs80332023-C	NR	3E-8		0.12	[NR] unit decrease	Illumina [11892802] (imputed)	N
1356	chr15	101147725	101147726	rs1873958	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	15q26.3	ASB7	rs1873958-A	0.4088	2E-15		1.0279		Affymetrix [11880941] (imputed)	N
1356	chr15	101147725	101147726	rs1873958	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	15q26.3	ASB7	rs1873958-A	0.4088	2E-15		1.0282929		Affymetrix [11880941] (imputed)	N
1356	chr15	101150434	101150435	rs11852820	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	15q26.3		rs11852820-C	0.6589	6E-10		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1357	chr15	101197004	101197005	rs11247230	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	15q26.3	ASB7	rs11247230-G	0.34	3E-6	(EA)	0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1357	chr15	101197004	101197005	rs11247230	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	15q26.3	ASB7	rs11247230-G	0.34	1E-8		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1357	chr15	101199736	101199737	rs60779155	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	15q26.3	ASB7	rs60779155-A		4E-8		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1357	chr15	101200872	101200873	rs34222435	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	15q26.3	ASB7, ALDH1A3	rs34222435-C	0.87	2E-20		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1357	chr15	101200872	101200873	rs34222435	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	15q26.3	ASB7	rs34222435-T	NR	8E-7	(EA)	0.019	[0.011-0.027] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1357	chr15	101200872	101200873	rs34222435	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	15q26.3	ASB7	rs34222435-T	NR	1E-10		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1357	chr15	101201603	101201604	rs4299136	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	15q26.3	ASB7	rs4299136-C	0.132	3E-9		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1357	chr15	101201603	101201604	rs4299136	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	15q26.3	ASB7	rs4299136-C	0.139	4E-8		0.018	[0.012-0.024] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1357	chr15	101201603	101201604	rs4299136	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	15q26.3	ASB7	rs4299136-C	NR	3E-12		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1357	chr15	101201603	101201604	rs4299136	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	15q26.3	ASB7	rs4299136-C	NR	2E-9	(EA)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1357	chr15	101202269	101202269	rs148139847	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	15q26.3	ASB7	rs148139847-C	0.87	2E-13		0.00978	[0.0072-0.0124] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1357	chr15	101206637	101206638	rs7167736	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	15q26.3	ASB7, ALDH1A3	rs7167736-?	NR	9E-13		1.1363636	[1.1-1.18]	Illumina [13537761] (imputed)	N
1357	chr15	101229493	101229494	rs1689953	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	15q26.3	ASB7	rs1689953-T	0.7	2E-6		4.76	NR Z score decrease	Affymetrix, Illumina [2725778] (imputed)	N
1357	chr15	101232443	101232444	rs80180425	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	15q26.3	NR	rs80180425-G	0.202	1E-6	(Males)	0.269893	[0.16-0.38] unit increase	Illumina [~ 6600000] (imputed)	N
1357	chr15	101233878	101233879	rs2641224	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q26.3	NR	rs2641224-T	0.286525	1E-8		0.0194408	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
1357	chr15	101244571	101244572	rs1626645	33125391	Hassler S	2020-10-30	PLoS Med	Clinicogenomic factors of biotherapy immunogenicity in autoimmune disease: A prospective multicohort study of the ABIRISK consortium.	Anti-drug antibodies in autoimmune disease (time to event)	457 European ancestry individuals	NA	15q26.3	ASB7	rs1626645-?	NR	6E-7				Illumina [351824]	N
1357	chr15	101251718	101251719	rs184234	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	15q26.3	ASB7	rs184234-?	NR	1E-6				Affymetrix, Illumina [~ 1300000]	N
1358	chr15	101390342	101390343	rs116828404	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	15q26.3	LOC145757	rs116828404-?	NR	4E-8		0.45	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1359	chr15	101467399	101467400	rs10902585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	15q26.3		rs10902585-A	NR	6E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1359	chr15	101470724	101470725	rs12593923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	15q26.3	NR	rs12593923-G	NR	2E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1359	chr15	101529011	101529012	rs35985016	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	15q26.3	LRRK1	rs35985016-A	0.93	2E-8		0.843	[0.78-0.9]	Illumina [11270530] (imputed)	N
1359	chr15	101555398	101555399	rs2034809	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	15q26.3	LRRK1	rs2034809-G	0.51	4E-6		1.844	[1.06-2.63] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1359	chr15	101558561	101558562	rs930847	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	15q26.3	LRRK1	rs930847-?	NA	4E-34		3.47	[2.92-4.02] unit increase	Affymetrix [5541230] (imputed)	N
1359	chr15	101558561	101558562	rs930847	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q26.3	LRRK1	rs930847-G	0.235	2E-17		3.94	[3.03-4.85] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1359	chr15	101558561	101558562	rs930847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	15q26.3		rs930847-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1359	chr15	101558561	101558562	rs930847	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	15q26.3	NR	rs930847-G	0.229998	4E-9		0.0217665	[0.015-0.029] unit increase	NR [19129689] (imputed)	N
1359	chr15	101558561	101558562	rs930847	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	15q26.3	LRRK1	rs930847-T	0.76	2E-23		3.64	[2.93-4.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1359	chr15	101558561	101558562	rs930847	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q26.3	LRRK1	rs930847-T	0.77	6E-19		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1359	chr15	101558611	101558612	rs930846	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q26.3	LRRK1	rs930846-A	0.454	1E-13	(conditional)	3.381	[2.49-4.27] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1359	chr15	101558926	101558927	rs11247252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs11247252-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1360	chr15	101585335	101585336	rs4965359	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	15q26.3	LRRK1	rs4965359-A	0.54	4E-7		3.77	[NR] unit decrease	Illumina [576798] (imputed)	N
1360	chr15	101618156	101618157	rs2925196	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	RP11-505E24.2, LRRK1	rs2925196-A	0.5991	2E-6		0.0386	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1360	chr15	101702900	101702901	rs4965800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	15q26.3	RP11-424I19.2	rs4965800-A	0.4113	4E-7		0.0354	[0.022-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1360	chr15	101706238	101706239	rs192420364	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	15q26.3	CHSY1	rs192420364-T	0.0106089637184563	8E-6	(F_Streptococcaceae_HB)	1.27713	[0.72-1.84] unit decrease	Illumina [7711310] (imputed)	N
1360	chr15	101707819	101707820	rs34645479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	15q26.3	RP11-424I19.2	rs34645479-T	0.0949	2E-9		0.03722549	[0.025-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101713432	101713433	rs7181956	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	15q26.3	CHSY1	rs7181956-A	0.1995	1E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1361	chr15	101713667	101713668	rs28576226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	15q26.3	RP11-424I19.2, CHSY1	rs28576226-A	0.123585	4E-25		0.03487016	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr15	101713667	101713668	rs28576226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs28576226-A	0.183354	4E-26				Affymetrix, Illumina [24649327] (imputed)	N
1361	chr15	101713667	101713668	rs28576226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	15q26.3	NR	rs28576226-A	0.122129	6E-28		0.031285	[0.026-0.037] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1361	chr15	101713667	101713668	rs28576226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q26.3		rs28576226-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1361	chr15	101716796	101716797	rs3784526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	15q26.3	CHSY1	rs3784526-A	0.106997	1E-32		0.042846102	[0.036-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr15	101716796	101716797	rs3784526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	15q26.3	CHSY1	rs3784526-A	0.1078	9E-13		0.04125107	[0.03-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101716796	101716797	rs3784526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	15q26.3	CHSY1	rs3784526-A	0.1078	6E-17		0.04843516	[0.037-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101718238	101718239	rs62621400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	15q26.3		rs62621400-G	NR	4E-38		0.0461	[0.039-0.053] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1361	chr15	101718238	101718239	rs62621400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	15q26.3	CHSY1	rs62621400-G	NR	1E-10		0.0395189	[0.028-0.052] unit decrease	Affymetrix [321016] (imputed)	N
1361	chr15	101718238	101718239	rs62621400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	CHSY1	rs62621400-G	NR	4E-14		0.0503132	[0.037-0.063] unit decrease	Affymetrix [323123] (imputed)	N
1361	chr15	101718238	101718239	rs62621400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs62621400-?	NR	3E-79				NR [~ 8900000] (imputed)	N
1361	chr15	101721891	101721892	rs12593811	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		15q26.3	NR	rs12593811-T		7E-6		0.226	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	15q26.3		rs7168592-T	NR	8E-18		0.0331	[0.026-0.041] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	15q26.3		rs7168592-T	NR	5E-26		0.0406	[0.033-0.048] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	15q26.3	CHSY1	rs7168592-T	0.107106	2E-36		0.04521469	[0.038-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.107	4E-12		0.04029944	[0.029-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.1071	3E-13		0.0424535	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.107	1E-13		0.04268783	[0.031-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.107	5E-13		0.04190095	[0.031-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.1071	1E-10		0.03752882	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101723498	101723499	rs7168592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	15q26.3	CHSY1	rs7168592-T	0.1071	3E-12		0.0406593	[0.029-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	15q26.3	CHSY1	rs67175901-T	0.108359	3E-26		0.037837937	[0.031-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	15q26.3	CHSY1	rs67175901-T	0.108373	8E-17		0.029725168	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	15q26.3	CHSY1	rs67175901-T	0.108471	1E-16		0.029638654	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs67175901-T	0.120884	2E-41				Affymetrix, Illumina [23114412] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	15q26.3	NR	rs67175901-T	0.107472	2E-43		0.043563	[0.037-0.05] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1361	chr15	101748226	101748227	rs67175901	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	15q26.3	NR	rs67175901-T	0.123416	7E-13				Affymetrix, Illumina [19905671] (imputed)	N
1361	chr15	101748610	101748610	rs780989226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	15q26.3	NR	rs780989226-D	0.108908	3E-15		0.026892	[0.02-0.034] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1361	chr15	101762538	101762539	rs8042424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	15q26.3	CHSY1	rs8042424-T	NR	9E-9		0.0210477	[0.014-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1361	chr15	101767821	101767822	rs8036083	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	15q26.3	CHSY1	rs8036083-G	NR	7E-6		1.35	[1.19-1.55]	Illumina [up to 294091]	N
1361	chr15	101774607	101774608	rs72768580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs72768580-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1361	chr15	101781933	101781934	rs752092	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	15q26.3	CHSY1b	rs752092-?	NR	3E-8		0.115	[0.08-0.16] unit increase	Illumina [NR]	N
1361	chr15	101781933	101781934	rs752092	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	15q26.3	CHSY1	rs752092-A	0.67	3E-8		2.205	[1.43-2.98] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1361	chr15	101781933	101781934	rs752092	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	15q26.3	CHSY1	rs752092-A	0.66	2E-9		0.08	[0.06-0.1] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1361	chr15	101786732	101786733	rs28445340	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	15q26.3		rs28445340-C	0.19	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1361	chr15	101786746	101786747	rs9672951	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	15q26.3	NR	rs9672951-T	0.1835	3E-8				NR [9056863] (imputed)	N
1361	chr15	101789043	101789044	rs28498458	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	15q26.3	CHSY1	rs28498458-T	0.34	2E-7		2.126	[1.32-2.93] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
1361	chr15	101827490	101827491	rs56377826	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	15q26.3	SNRPA1	rs56377826-T	0.7807425530000001	6E-6		1.0730215	[1.04-1.11]	Illumina [10439017] (imputed)	N
1362	chr15	101845481	101845482	rs34631529	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	15q26.3		rs34631529-?	NR	3E-8		0.0817853	[0.052-0.112] unit decrease	NR [9800000] (imputed)	N
1362	chr15	101845481	101845482	rs34631529	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	15q26.3	NR	rs34631529-A	NR	3E-9		0.0994	[0.067-0.132] unit decrease	Affymetrix [9000000] (imputed)	N
1362	chr15	101845481	101845482	rs34631529	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	15q26.3	NR	rs34631529-A	NR	1E-12		0.1189	[0.086-0.152] unit decrease	Affymetrix [9000000] (imputed)	N
1362	chr15	101845481	101845482	rs34631529	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	15q26.3	NR	rs34631529-G	0.99483	6E-9		0.0777648	[0.052-0.104] unit increase	Affymetrix [15000001]	N
1362	chr15	101854310	101854311	rs187627940	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	15q26.3	NR	rs187627940-A	0.01	9E-6		2.13	[1.8-2.46]	Illumina [8468885] (imputed)	N
1362	chr15	101865471	101865472	rs7182874	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	15q26.3	VIMP, LOC100507472, PCSK6, CHSY1, SNRPA1	rs7182874-T	0.71	9E-9		0.37	[0.24-0.50] unit decrease	Illumina [2095209]	N
1362	chr15	101875122	101875123	rs11855415	21051773	Scerri TS	2010-11-09	Hum Mol Genet	PCSK6 is associated with handedness in individuals with dyslexia.	Handedness in dyslexia	192 individuals	573 European ancestry individuals	15q26.3	PCSK6	rs11855415-A	0.25	2E-8		0.35	[0.23-0.47] SD increase	Illumina [~ 2000000] (imputed)	N
1362	chr15	101890912	101890913	rs10152471	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q26.3	PCSK6	rs10152471-G	0.611343	5E-11		0.0134847	[0.0095-0.0175] unit increase	Affymetrix [NR] (imputed)	N
1362	chr15	101895870	101895871	rs12593069	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (young age of onset interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	15q26.3	PCSK6	rs12593069-C	NR	7E-10				Illumina [NR]	N
1362	chr15	101895927	101895928	rs7178801	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	vascular endothelial growth factor D levels	21,758 European ancestry individuals	9,173 individuals	15q26.3		rs7178801-A	0.67	1E-8		0.0554	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1362	chr15	101905532	101905533	rs11247287	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	15q26.3	PCSK6	rs11247287-T	0.6649	3E-8		0.0127	[0.0082-0.0172] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	1E-8		0.024204	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	1E-14		0.0326489	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	5E-8		0.0231192	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	4E-8		0.0224769	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	1E-9		0.0265436	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	1E-10		0.0280594	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	2E-8		0.0243664	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	4E-8		0.0234476	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	6E-9		0.0247337	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1362	chr15	101905965	101905966	rs8029570	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs8029570-T	0.666857	1E-10		0.0277016	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1363	chr15	101975005	101975006	rs528002287	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	15q26.3		rs528002287-?	NR	6E-6		1.1276343	[1.07040964631689-1.18791826274172]	Illumina [up to 7827597] (imputed)	N
1363	chr15	101980602	101980603	rs6598473	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	15q26.3		rs6598473-A	0.14	3E-13		7.28	z score increase	Affymetrix [9061022] (imputed)	N
1363	chr15	101986629	101986630	rs6598475	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs6598475-?	NR	1E-54				Illumina [11329225] (imputed)	N
1363	chr15	101986629	101986630	rs6598475	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs6598475-?	NR	4E-17	(conditioned on rs11639051)			Illumina [6022229] (imputed)	N
1363	chr15	101986629	101986630	rs6598475	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs6598475-?	NR	7E-7	(PDGF-BB, conditioned on rs11639051)			Illumina [6022229] (imputed)	N
1363	chr15	101986629	101986630	rs6598475	30470734	Hackinger S	2018-11-23	Transl Psychiatry	Evidence for genetic contribution to the increased risk of type 2 diabetes in schizophrenia.	Type 2 diabetes	822 Greek ancestry cases, 1,125 Greek ancestry controls	NA	15q26.3	PCSK6	rs6598475-T	0.36	2E-8		1.56	[1.40-1.72]	Illumina [14528340] (imputed)	N
1363	chr15	101990319	101990320	rs4965869	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs4965869-C		6E-24		0.184	[0.15-0.22] SD units decrease	NR [10700000] (imputed)	N
1363	chr15	101991747	101991748	rs11637184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,364 Icelandic ancestry individuals	NA	15q26.3		rs11637184-C	0.2495	5E-57		0.341467	[0.3-0.38] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101991772	101991773	rs7178458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,364 Icelandic ancestry individuals	NA	15q26.3		rs7178458-T	0.3493	2E-55		0.301921	[0.26-0.34] unit increase	Illumina [7506463] (imputed)	N
1363	chr15	101992997	101992998	rs11639051	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs11639051-?	NR	3E-69				Illumina [11329225] (imputed)	N
1363	chr15	101992997	101992998	rs11639051	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	15q26.3		rs11639051-A	0.3	2E-21		0.097	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1363	chr15	101992997	101992998	rs11639051	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs11639051-?	NR	2E-58				Illumina [6022229] (imputed)	N
1363	chr15	101992997	101992998	rs11639051	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	15q26.3	PCSK6	rs11639051-?	NR	1E-26	(PDGF-BB)			Illumina [6022229] (imputed)	N
1363	chr15	101993036	101993037	rs11634252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,362 Icelandic ancestry individuals	NA	15q26.3		rs11634252-G	0.2583	7E-32		0.252581	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101993988	101993989	rs1552948	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC1	5,360 Icelandic ancestry individuals	NA	15q26.3		rs1552948-T	0.2497	2E-14		0.160397	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101994232	101994233	rs1552950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINE2	5,367 Icelandic ancestry individuals	NA	15q26.3		rs1552950-G	0.2491	6E-12		0.15116	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101994232	101994233	rs1552950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,344 Icelandic ancestry individuals	NA	15q26.3		rs1552950-G	0.2491	5E-27		0.212642	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101994232	101994233	rs1552950	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLFM3	5,343 Icelandic ancestry individuals	NA	15q26.3		rs1552950-G	0.2491	3E-15		0.159604	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1363	chr15	101997990	101997991	rs903552	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA		NR	rs903552-?	NR	2E-6	(dominant)	1.3513513	[1.18-1.54]	Affymetrix [NR]	N
1363	chr15	101999650	101999651	rs142644068	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	15q26.3	PCSK6	rs142644068-?	NR	2E-6		7.5757575		Illumina [848325]	N
1363	chr15	102007616	102007617	rs11247294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	15q26.3		rs11247294-?	NR	3E-21				NR [~ 8900000] (imputed)	N
1363	chr15	102014346	102014347	rs765825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	15q26.3		rs765825-G	0.463197	1E-9		0.0122538	[0.0083-0.0162] unit increase	Illumina [13479295] (imputed)	N
1363	chr15	102015319	102015320	rs12905213	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	15q26.3	PCSK6	rs12905213-?	NR	6E-12		0.019866232	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1363	chr15	102042022	102042023	rs146322114	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		15q26.3	Intergenic	rs146322114-A	0.029	2E-6	(liability model)	0.25	[0.15-0.35] unit decrease	NR [19725427] (imputed)	N
1363	chr15	102063640	102063641	rs116300444	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	15q26.3	NR	rs116300444-C		6E-6		0.2228	[0.13-0.32] SD units decrease	NR [10700000] (imputed)	N
1363	chr15	102065007	102065008	rs2084152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q26.3		rs2084152-T	0.777889	5E-8		0.0262185	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102065007	102065008	rs2084152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	15q26.3		rs2084152-T	0.777889	2E-9		0.0293658	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102065007	102065008	rs2084152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	15q26.3		rs2084152-T	0.777889	4E-8		0.0264186	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102065007	102065008	rs2084152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	15q26.3		rs2084152-T	0.777889	7E-10		0.0297156	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1363	chr15	102065007	102065008	rs2084152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	15q26.3		rs2084152-T	0.777815	3E-8		0.0264735	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1363	chr15	102066193	102066194	rs2084151	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	15q26.3	NR	rs2084151-?	NR	5E-7			[NR]	Illumina [5779266] (imputed)	N
1363	chr15	102067840	102067841	rs8025505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	15q26.3		rs8025505-T	NR	6E-17		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1363	chr15	102067840	102067841	rs8025505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	15q26.3		rs8025505-T	NR	2E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1363	chr15	102067840	102067841	rs8025505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	15q26.3	NR	rs8025505-T	0.25757	3E-10		0.013636	[0.0094-0.0179] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1363	chr15	102067840	102067841	rs8025505	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	15q26.3	PCSK6	rs8025505-C	0.742967	4E-14		0.0173098	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	3E-8		0.0250323	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	2E-18		0.0401001	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	1E-9		0.0286046	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	4E-11		0.0312655	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	3E-12		0.0323582	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745059	7E-9		0.0261702	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	15q26.3		rs1037117-G	0.745065	5E-14		0.0351883	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	15q26.3	PCSK6	rs1037117-A	0.254209	8E-10		0.01562058	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	15q26.3	PCSK6	rs1037117-G	0.745268	1E-12		0.0160491	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	15q26.3	TM2D3	rs1037117-?	NR	1E-12		0.0214	[0.016-0.027] unit increase	Affymetrix [5701386] (imputed)	N
1363	chr15	102068657	102068658	rs1037117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	15q26.3		rs1037117-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs1037116-C	0.786882	3E-9		0.0288701	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs1037116-C	0.786882	3E-10		0.0315494	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	15q26.3		rs1037116-C	0.786882	1E-9		0.03003	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	15q26.3		rs1037116-C	0.786884	2E-8		0.0277849	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	15q26.3		rs1037116-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q26.3		rs1037116-C	NR	1E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q26.3		rs1037116-C	0.793	3E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr15	102068903	102068904	rs1037116	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	15q26.3	NR	rs1037116-C	NR	2E-8		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1363	chr15	102069042	102069043	rs4965894	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	15q26.3	PCSK6	rs4965894-T	0.596867	5E-8		0.0116391	[0.0075-0.0158] unit increase	Affymetrix [NR] (imputed)	N
1363	chr15	102069161	102069162	rs7183117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	15q26.3	NR	rs7183117-G	NR	4E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix [9000000] (imputed)	N
1363	chr15	102085599	102085600	rs4965897	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	15q26.3	NR	rs4965897-?	NR	3E-24				Affymetrix [NR]	N
1363	chr15	102090422	102090423	rs112967753	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	15q26.3	NR	rs112967753-C		3E-8		0.2281	[0.15-0.31] SD units decrease	NR [10700000] (imputed)	N
1363	chr15	102104693	102104694	rs1984528	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	15q26.3	NR	rs1984528-G	NR	3E-6		0.837	NR	Illumina [at least 560000] (imputed)	N
1364	chr15	102188984	102188985	rs28758178	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (pre-diagnosis)	27 European ancestry cases, 1,180 European ancestry controls	NA	15q26.3	TM2D3	rs28758178-A	NR	3E-6		4.44	NR	Illumina [602644]	N
1365	chr15	102326465	102326466	rs405805	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	15q26.3	intergenic	rs405805-?	NR	4E-6				Illumina [659211]	N
1366	chr15	102394801	102394802	rs117168171	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		15q26.3	intergenic	rs117168171-?	NR	2E-7	(AA)	0.066	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
585	chr16	91061	91062	rs1088639	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Red blood cell count	up to 7,526 African ancestry individuals	NA	16p13.3		rs1088639-G	0.887	2E-10		0.32	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
585	chr16	94223	94224	rs560350077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	POLR3K	rs560350077-G	0.00334000000000001	2E-15		0.24766	[0.2-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
585	chr16	105648	105649	rs868351380	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs868351380-C	0.022	1E-9		7.99	[5.42-10.56] unit decrease	Illumina [97506867]	N
585	chr16	105648	105649	rs868351380	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs868351380-C	0.022	5E-10		3.19	[2.19-4.19] unit decrease	Illumina [94681438]	N
585	chr16	106595	106596	rs80023530	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	16p13.3		rs80023530-?	NR	2E-8		33.0844	[31.87-34.3]	NR [663102]	N
585	chr16	113026	113027	rs78541046	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	16p13.3	RHBDF1	rs78541046-?	NR	2E-6	(adjusted)	6.2228026	[2.94-12.5]	Illumina [241551]	N
585	chr16	115184	115185	rs1366553	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPG	5,363 Icelandic ancestry individuals	NA	16p13.3		rs1366553-T	0.01821	3E-26		0.746103	[0.61-0.88] unit increase	Illumina [7506463] (imputed)	N
585	chr16	115506	115507	rs77546475	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	MPG	rs77546475-G	0.98046875	1E-12	(MPG, 12438_127_3)	0.6307856	[0.46-0.8] unit decrease	Illumina [> 1000000] (imputed)	N
585	chr16	123895	123896	rs2562152	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	16p13.3	MPG	rs2562152-T	0.85	2E-8		1.21	1.13-1.29	Illumina [at least 6790270] (imputed)	N
586	chr16	132751	132752	rs184069239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	MPG	rs184069239-T	5.69999999999737E-5	6E-20		1.50785	[1.18-1.83] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	132751	132752	rs184069239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	MPG	rs184069239-T	5.69999999999737E-5	1E-13		1.29721	[0.95-1.65] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	132751	132752	rs184069239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	MPG	rs184069239-T	5.5999999999945E-5	1E-22		1.7664843	[1.41-2.12] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	139366	139367	rs2239296	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NR	rs2239296-?	NR	8E-20		0.03902	[0.031-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr16	141658	141659	rs2562181	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs2562181-T	NR	7E-13	(African)	0.076	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
586	chr16	143502	143503	rs6600233	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs6600233-?	NR	1E-6		0.02797	[0.017-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr16	143502	143503	rs6600233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16p13.3	NPRL3	rs6600233-T	0.4573	3E-11		0.02437664	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	148442	148443	rs545105162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	NPRL3	rs545105162-A	6.0E-4	9E-11		0.7296126	[0.51-0.95] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	149538	149539	rs570013781	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16p13.3	NPRL3	rs570013781-A		2E-10		0.187	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
586	chr16	149538	149539	rs570013781	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	16p13.3	NPRL3, HBZ, HBQ1, HBA1, HBA2, MPG, HBM	rs570013781-A	0.136	6E-18	(HbA1, Sardinian)	0.1995	[0.15-0.24] g/dl decrease	Illumina [~ 10900000] (imputed)	N
586	chr16	150872	150873	rs151204441	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p13.3	NPRL3	rs151204441-G	0.961967	2E-12	(S-1-pyrroline-5-carboxylate)	0.467	[0.34-0.6] unit increase	Illumina [13039987] (imputed)	N
586	chr16	154222	154223	rs2238366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	NPRL3	rs2238366-A	0.014031	7E-11		0.0608955	[0.043-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	155131	155132	rs187174553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs187174553-T	0.00598200000000004	5E-31		0.0984844	[0.071-0.125] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	155131	155132	rs187174553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs187174553-T	0.00597800000000004	5E-41		0.19766118	[0.17-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	156034	156035	rs551864820	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs551864820-A	NR	1E-9	(conditional)	8.6	[5.84-11.36] unit decrease	Illumina [97506867]	N
586	chr16	156034	156035	rs551864820	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs551864820-A	NR	2E-10	(conditional)	3.48	[2.4-4.56] unit decrease	Illumina [94681438]	N
586	chr16	157592	157594	rs60992881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16p13.3		rs60992881-C	NR	3E-18		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
586	chr16	157592	157594	rs60992881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	NPRL3	rs60992881-C	0.618346	5E-19		0.022612588	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	157592	157594	rs60992881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	NPRL3	rs60992881-C	0.618349	4E-14		0.019188441	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	157592	157594	rs60992881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs60992881-C	0.618255	6E-17		0.019842329	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	157592	157594	rs60992881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16p13.3	NPRL3	rs60992881-C	0.6123	6E-23		0.03757814	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	157592	157594	rs60992881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	NPRL3	rs60992881-C	0.6121	7E-37		0.04658995	[0.039-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	158323	158324	rs8055187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16p13.3	NR	rs8055187-T	0.486095	5E-376		0.080138	[0.076-0.084] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
586	chr16	158323	158324	rs8055187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs8055187-?	NR	1E-300				NR [~ 8900000] (imputed)	N
586	chr16	161937	161938	rs183350	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.3	NR	rs183350-?	NR	2E-8				Affymetrix [NR]	N
586	chr16	163597	163598	rs11248850	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	16p13.3	NPRL3, KIF22	rs11248850-G	0.5	6E-23	(EA, MCH)	0.007	[-0.00084-0.01484] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
586	chr16	165357	165358	rs12926327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	NPRL3	rs12926327-C	0.033779	2E-9		0.039732765	[0.027-0.053] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	165518	165520	rs10573551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	NPRL3	rs10573551-C	0.489507	9E-67		0.0408562	[0.037-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	166959	166960	rs11248853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	NPRL3	rs11248853-T	0.489785	3E-17		0.020453667	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	169167	169168	rs367729589	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	16p13.3		rs367729589-?	NR	1E-8		0.405528	[0.26-0.55] unit decrease	NR [9800000] (imputed)	N
586	chr16	169167	169168	rs367729589	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	16p13.3		rs367729589-?	NR	3E-43		0.952881	[0.81-1.1] unit decrease	NR [9800000] (imputed)	N
586	chr16	169167	169168	rs367729589	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	16p13.3		rs367729589-?	NR	1E-61		1.1722	[1.03-1.32] unit decrease	NR [9800000] (imputed)	N
586	chr16	170075	170076	rs117747069	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16p13.3		rs117747069-G	0.963	9E-188		1.03	[0.96-1.1] % increase	Affymetrix [NR] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036766	1E-25		0.078650855	[0.064-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036757	2E-11		0.050176084	[0.036-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036745	2E-55		0.11469967	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.03676	3E-44		0.10265339	[0.088-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036725	7E-38		0.095246576	[0.081-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036735	4E-181		0.250548	[0.24-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.03673	1E-45		0.125252	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036727	8E-209		0.2267475	[0.21-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036766	4E-20		0.06745905	[0.053-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	NPRL3	rs117747069-C	0.036762	2E-10		0.046734124	[0.032-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170075	170076	rs117747069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs117747069-?	NR	6E-92				NR [~ 8900000] (imputed)	N
586	chr16	170075	170076	rs117747069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p13.3	NPRL3	rs117747069-C	0.0342	6E-27		0.1101205	[0.09-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170075	170076	rs117747069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	NPRL3	rs117747069-C	0.0343	4E-82		0.1951925	[0.18-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170075	170076	rs117747069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	NPRL3	rs117747069-C	0.0343	1E-28		0.1106235	[0.091-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170075	170076	rs117747069	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	NPRL3	rs117747069-C	0.0341	2E-100		0.2170817	[0.2-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170075	170076	rs117747069	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	16p13.3	NPRL3	rs117747069-C		4E-13	(MCH)	0.172	[0.12-0.22] unit decrease	Affymetrix, Illumina [17000000] (imputed)	N
586	chr16	170327	170328	rs2238368	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p13.3	NR	rs2238368-T	NR	2E-10		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.461032	8E-21		0.023368804	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.460798	3E-46		0.03328352	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.460958	5E-33		0.027791107	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.460924	5E-35		0.028757375	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.460793	1E-170		0.0794853	[0.075-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs2238368-T	0.460784	3E-211		0.07619863	[0.071-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	170327	170328	rs2238368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p13.3	NPRL3	rs2238368-T	0.4608	1E-34		0.04377869	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170327	170328	rs2238368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	NPRL3	rs2238368-T	0.4608	6E-101		0.07540179	[0.068-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	170327	170328	rs2238368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	NPRL3	rs2238368-T	0.4609	5E-130		0.0859984	[0.079-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	176375	176376	rs12925761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs12925761-T	0.401691	7E-418				Affymetrix, Illumina [20825802] (imputed)	N
586	chr16	176445	176446	rs60125383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs60125383-A	0.408872	2E-345				Affymetrix, Illumina [24246363] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs60125383-?	0.43	6E-7				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs60125383-?	0.5441	5E-8		0.2222	[0.14-0.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs60125383-?	0.4344	5E-7		0.5133	[0.31-0.71] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs60125383-?	0.5441	2E-6		0.0306	[0.018-0.043] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs60125383-?	0.5441	3E-13		0.1122	[0.082-0.142] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs60125383-?	0.4344	3E-7		0.1999	[0.12-0.28] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	176445	176446	rs60125383	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	16p13.3		rs60125383-?	0.55	2E-6		0.1006	[0.059-0.142] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	184389	184390	rs7203560	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs7203560-G	NR	3E-22	(African)	0.183	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
586	chr16	184389	184390	rs7203560	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	16p13.3	NR	rs7203560-?	NR	1E-15		0.3046072	[0.23-0.38] unit decrease	Illumina [27815891] (imputed)	N
586	chr16	184389	184390	rs7203560	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	NPRL3	rs7203560-G	0.008	6E-8		2.194	[1.4-2.99] fL decrease	Illumina [27801688] (imputed)	N
586	chr16	184389	184390	rs7203560	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	NPRL3	rs7203560-G	0.01	8E-12		1.023	[0.73-1.32] pg decrease	Illumina [27801688] (imputed)	N
586	chr16	184389	184390	rs7203560	23406172	Milton JN	2013-02-14	Br J Haematol	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African ancestry, West African ancestry and Afro-Caribbean individuals, 745 individuals	16p13.3	NPRL3	rs7203560-C	0.07	2E-9		0.44	[0.30-0.58] unit decrease	Illumina [569554]	N
586	chr16	184389	184390	rs7203560	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs7203560-G	0.06801	8E-43	(AA)	2.555	[2.19-2.92] unit decrease	Illumina [544917]	N
586	chr16	184389	184390	rs7203560	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs7203560-G	0.06801	1E-33	(AA)	0.5311	[0.45-0.62] unit decrease	Illumina [544917]	N
586	chr16	184389	184390	rs7203560	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs7203560-G	0.06801	5E-62	(AA)	1.255	[1.11-1.4] unit decrease	Illumina [544917]	N
586	chr16	184389	184390	rs7203560	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs7203560-G	0.06801	2E-8	(AA, HGB)	0.199	[0.13-0.27] unit decrease	Illumina [544917]	N
586	chr16	184389	184390	rs7203560	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs7203560-G	0.06801	2E-23	(AA, RBC)	0.1452	[0.12-0.17] unit increase	Illumina [544917]	N
586	chr16	187550	187552	rs72083020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs72083020-C	0.0369119999999999	1E-11		0.105162	[0.094-0.116] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	187675	187676	rs12923013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	NPRL3	rs12923013-A	0.033415	5E-10		0.03922051	[0.027-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	187675	187676	rs12923013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs12923013-A	0.033425	6E-13		0.045889877	[0.033-0.058] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	193223	193224	rs11864973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs11864973-A	0.011775	2E-14		0.08085352	[0.06-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	193223	193224	rs11864973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	NPRL3	rs11864973-A	0.011798	4E-75		0.183441	[0.16-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	193223	193224	rs11864973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	NPRL3	rs11864973-A	0.0117969999999999	3E-102		0.23291726	[0.21-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	193223	193224	rs11864973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	16p13.3	NR	rs11864973-G	0.91004	4E-61		0.127336	[0.11-0.14] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
586	chr16	193223	193224	rs11864973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	16p13.3	NR	rs11864973-G	0.910043	7E-87		0.153312	[0.14-0.17] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
586	chr16	193223	193224	rs11864973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	16p13.3	NPRL3, HBZ	rs11864973-?	NR	2E-12		0.05568	[0.04-0.071] unit increase novel	Illumina [6108953] (imputed)	N
586	chr16	193223	193224	rs11864973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NPRL3, HBZ	rs11864973-?	NR	5E-55		0.1242	[0.11-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr16	193223	193224	rs11864973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	16p13.3	NPRL3, HBZ	rs11864973-?	NR	7E-30		0.0904	[0.075-0.106] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr16	193223	193224	rs11864973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NPRL3, HBZ	rs11864973-?	NR	2E-78		0.149	[0.13-0.16] unit decrease novel	Illumina [6108953] (imputed)	N
586	chr16	195390	195391	rs9652781	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	intergenic	rs9652781-C	0.012	1E-9		0.09922155	[0.067-0.131] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	196468	196469	rs112190912	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	intergenic	rs112190912-G	0.0119	2E-27		0.1799954	[0.15-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	196468	196469	rs112190912	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	intergenic	rs112190912-G	0.0119	4E-32		0.196256	[0.16-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	198834	198835	rs8051004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	HBZ	rs8051004-C	0.01225	1E-22		0.09965551	[0.08-0.12] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	198834	198835	rs8051004	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs8051004-?	0.05	5E-7				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	198834	198835	rs8051004	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs8051004-?	0.064	8E-8		0.569	[0.36-0.78] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	198834	198835	rs8051004	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs8051004-?	0.064	3E-8		0.0872	[0.056-0.118] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	198834	198835	rs8051004	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs8051004-?	0.064	7E-11		0.2613	[0.18-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	201753	201754	rs113613943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs113613943-?	NR	3E-140				NR [~ 8900000] (imputed)	N
586	chr16	202048	202049	rs2974760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	HBM, HBZ	rs2974760-A	0.610997	1E-17		0.02008222	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	202048	202049	rs2974760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	HBZ, HBM	rs2974760-A	0.6116	8E-15		0.02816609	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	202048	202049	rs2974760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	HBZ, HBM	rs2974760-A	0.6115	1E-33		0.0440579	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	203134	203135	rs2858919	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs2858919-A	0.687	2E-89	(Hemoglobin subunit zeta, HBZ.6919.3.3)	0.59	[0.53-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
586	chr16	203253	203254	rs2461286	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	HBZ	rs2461286-G	0.647	1E-389	(Hemoglobin subunit zeta, HBZ.6919.3.3)	0.88	[0.84-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
586	chr16	204125	204126	rs531302321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBM, HBZ	rs531302321-G	0.202309	6E-17		0.027935674	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	204125	204126	rs531302321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	HBM, HBZ	rs531302321-G	0.202266	2E-12		0.021214616	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	205034	205035	rs2541639	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NR	rs2541639-?	NR	4E-17		0.0512	[0.039-0.063] unit increase novel	Illumina [6108953] (imputed)	N
586	chr16	205034	205035	rs2541639	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	16p13.3	NR	rs2541639-?	NR	1E-20		0.05678	[0.045-0.069] unit increase novel	Illumina [6108953] (imputed)	N
586	chr16	205034	205035	rs2541639	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs2541639-?	NR	1E-33		0.0735	[0.062-0.085] unit increase novel	Illumina [6108953] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs115415087-?	0.018	1E-10				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs115415087-?	0.0108	3E-10		0.1524	[0.1-0.2] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals	NA	16p13.3		rs115415087-?	0.0177	3E-6		0.1389	[0.081-0.197] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs115415087-?	0.0108	3E-14		2.641	[1.96-3.32] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs115415087-?	0.0177	7E-12		2.6558	[1.9-3.41] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs115415087-?	0.0108	1E-12		0.9756	[0.71-1.24] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	205131	205132	rs115415087	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs115415087-?	0.0177	8E-10		0.8952	[0.61-1.18] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	207610	207611	rs2541638	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	HBZ	rs2541638-C	0.719375	2E-10	(HBZ, 6919_3_3)	0.17560078	[0.12-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
586	chr16	208760	208761	rs139772527	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	16p13.3	HBZ	rs139772527-T	0.01	1E-6		1.81	[1.57-2.05]	Affymetrix, Illumina [up to 6976246] (imputed)	N
586	chr16	209763	209764	rs2685131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	HBM	rs2685131-C	0.174342	8E-10		0.021621313	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	209815	209816	rs2685130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	HBM	rs2685130-C	0.638622	2E-13		0.020715104	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	209815	209816	rs2685130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	HBM	rs2685130-C	0.638526	2E-17		0.02397235	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	209815	209816	rs2685130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	HBM	rs2685130-C	0.63853	3E-13		0.020667221	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	211104	211105	rs2541645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBZ	5,350 Icelandic ancestry individuals	NA	16p13.3		rs2541645-T	0.2799	4E-17		0.166457	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
586	chr16	211105	211106	rs2858931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	HBM	rs2858931-T	0.64095	1E-17		0.024088137	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	211105	211106	rs2858931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	HBM	rs2858931-T	0.640861	1E-46		0.0211272	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	211105	211106	rs2858931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBM	rs2858931-T	0.640826	2E-37		0.035923265	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	212648	212649	rs3785309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.3	HBM	rs3785309-T	0.100151	8E-30		0.042641398	[0.035-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	212648	212649	rs3785309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16p13.3	HBM	rs3785309-T	0.10011	5E-17		0.031529266	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	212648	212649	rs3785309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.3		rs3785309-?	NR	8E-45				NR [~ 8900000] (imputed)	N
586	chr16	212648	212649	rs3785309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	16p13.3	HBM	rs3785309-T	0.1001	4E-9		0.03517903	[0.023-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105553	5E-40		0.05523694	[0.047-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105552	2E-35		0.05217181	[0.044-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105564	4E-29		0.0671525	[0.06-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105594	7E-22		0.040187348	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105588	1E-21		0.0399829	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	HBZP1	rs7194649-A	0.105555	7E-20		0.034173723	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	215105	215106	rs7194649	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16p13.3	NR	rs7194649-A	NR	2E-11		0.0440295	[0.031-0.057] unit decrease	Affymetrix [16832071] (imputed)	N
586	chr16	215105	215106	rs7194649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16p13.3	HBZP1	rs7194649-A	0.1058	3E-32		0.07073595	[0.059-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	215105	215106	rs7194649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16p13.3	HBZP1	rs7194649-A	0.1058	9E-27		0.06411951	[0.052-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	215105	215106	rs7194649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16p13.3	HBZP1	rs7194649-A	0.1058	3E-27		0.06471012	[0.053-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	215105	215106	rs7194649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16p13.3	HBZP1	rs7194649-A	0.1058	8E-25		0.06153466	[0.05-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	215378	215379	rs2541677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	HBM	rs2541677-A	0.177774	5E-13		0.023434633	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	215378	215379	rs2541677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2541677-G	0.810463	3E-47				Affymetrix, Illumina [22063850] (imputed)	N
586	chr16	215378	215379	rs2541677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2541677-A	0.200134	3E-175				Affymetrix, Illumina [21126107] (imputed)	N
586	chr16	216089	216090	rs148323035	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	HBM	rs148323035-T	0.93	6E-12	(Conditioned on esv2676630)	1.07	[0.76-1.38] g/dL increase	Illumina [27801688] (imputed)	N
586	chr16	216366	216367	rs200995285	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	16p13.3		rs200995285-?	NR	1E-15		0.189996	[0.14-0.24] unit decrease	NR [9800000] (imputed)	N
586	chr16	216366	216367	rs200995285	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	16p13.3		rs200995285-?	NR	4E-15		0.184437	[0.14-0.23] unit decrease	NR [9800000] (imputed)	N
586	chr16	216366	216367	rs200995285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBM	rs200995285-T	7.46000000000024E-4	1E-11		0.33864397	[0.24-0.44] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	218531	218532	rs1203833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	Z84721.4, HBA2	rs1203833-C	0.177624	2E-14		0.024847344	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	218531	218532	rs1203833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	Z84721.4, HBA2	rs1203833-C	0.177659	2E-16		0.026689783	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	218531	218532	rs1203833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs1203833-?	NR	5E-41				NR [~ 8900000] (imputed)	N
586	chr16	218531	218532	rs1203833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16p13.3	HBA2, Z84721.4	rs1203833-C	0.1788	1E-30		0.0543483	[0.045-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	218531	218532	rs1203833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16p13.3	HBA2, Z84721.4	rs1203833-C	0.1788	2E-20		0.04360587	[0.034-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	218531	218532	rs1203833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16p13.3	HBA2, Z84721.4	rs1203833-C	0.1788	2E-24		0.04805413	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	218531	218532	rs1203833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16p13.3	HBA2, Z84721.4	rs1203833-C	0.1788	2E-18		0.04127893	[0.032-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	219496	219497	rs28444102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBA2	rs28444102-T	0.087013	9E-41		0.062065158	[0.053-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	219496	219497	rs28444102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	16p13.3	HBA2	rs28444102-T	0.0862	4E-16		0.05204246	[0.04-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	220582	220583	rs145546625	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs145546625-?	0.93	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	220582	220583	rs145546625	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs145546625-?	0.9575	9E-15		1.0984	[0.82-1.38] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	220582	220583	rs145546625	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs145546625-?	0.9317	1E-18		1.1534	[0.9-1.41] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	220582	220583	rs145546625	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs145546625-?	0.9575	2E-14		0.4016	[0.3-0.5] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	220582	220583	rs145546625	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs145546625-?	0.9317	3E-19		0.4309	[0.34-0.53] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	220582	220583	rs145546625	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	16p13.3	FN3K	rs145546625-?	NR	4E-8	(Hispanic/Latino)	0.1505576	[0.097-0.204] unit increase	Illumina [22871999] (imputed)	N
586	chr16	220582	220583	rs145546625	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	16p13.3	FN3K	rs145546625-?	NR	4E-8		0.151	[0.098-0.204] unit increase	Illumina [22871999] (imputed)	N
586	chr16	220582	220583	rs145546625	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	16p13.3	HBM	rs145546625-T	0.066	1E-9		0.059	[0.039-0.079] % increase	Illumina [11510031] (imputed)	N
586	chr16	220582	220583	rs145546625	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	HBA2	rs145546625-C	0.93	3E-12	(Conditioned on esv2676630)	0.39	[0.27-0.51] pg increase	Illumina [27801688] (imputed)	N
586	chr16	221150	221151	rs55932218	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs55932218-?	0.05	5E-8				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	221150	221151	rs55932218	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs55932218-?	0.0296	2E-8		1.0939	[0.71-1.48] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	221150	221151	rs55932218	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs55932218-?	0.0515	3E-7		1.2094	[0.75-1.67] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	221150	221151	rs55932218	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs55932218-?	0.0296	6E-10		0.4601	[0.31-0.61] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	221150	221151	rs55932218	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs55932218-?	0.0515	2E-8		0.5021	[0.33-0.68] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	223677	223678	rs4021964	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	3,224 African American or Afro-Caribbean individuals	NA	16p13.3		rs4021964-?	0.1566	7E-6		0.1708	[0.097-0.245] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
586	chr16	223677	223678	rs4021964	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	16p13.3		rs4021964-?	0.09	2E-11		0.1831	[0.13-0.24] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
586	chr16	223677	223678	rs4021964	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	16p13.3		rs4021964-?	0.0379	9E-6		0.1867	[0.1-0.27] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.9917764	2E-23		0.1430255	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.99178048	2E-18		0.12576693	[0.098-0.154] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.99178325	1E-9		0.100848	[0.075-0.126] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-A	0.99178976	1E-10		0.086216	[0.059-0.113] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.99178453	5E-14		0.10592305	[0.078-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.99178111	5E-19		0.12780997	[0.1-0.156] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	223705	223706	rs2541640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	HBA2	rs2541640-G	0.99178598	2E-16		0.11782766	[0.09-0.146] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	225063	225063	rs112460909	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs112460909-CT	0.088	1E-56	(Hemoglobin subunit zeta, HBZ.6919.3.3)	0.69	[0.61-0.77] unit increase	Affymetrix [10572788] (imputed)	N
586	chr16	225652	225653	rs2858942	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	16p13.3	RGS11, ITFG3, HBA2, HBA1, LUC7L	rs2858942-A	0.46	3E-9		0.069	[0.045-0.093] unit decrease	Illumina [561583]	N
586	chr16	226263	226264	rs112128183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	HBA1, Y_RNA, HBQ1	rs112128183-C	0.0487	2E-12		0.05899497	[0.043-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	227186	227187	rs148228241	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Hemoglobin A1c levels	up to 7,526 African ancestry individuals	NA	16p13.3		rs148228241-G	0.899	3E-12		0.113766	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs8058016-?	0.9958	4E-6		0.1555	[0.089-0.222] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs8058016-?	0.992	3E-8				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs8058016-?	0.99	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs8058016-?	0.9958	8E-6		0.205	[0.11-0.3] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs8058016-?	0.9942	4E-21		4.3502	[3.45-5.25] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs8058016-?	0.9897	1E-11		4.5317	[3.22-5.84] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs8058016-?	0.9958	1E-8		4.2379	[2.78-5.69] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs8058016-?	0.9942	2E-22		1.7363	[1.39-2.09] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs8058016-?	0.9897	8E-13		1.8882	[1.37-2.41] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	228785	228786	rs8058016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs8058016-?	0.9958	2E-9		1.6928	[1.14-2.25] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230577	230578	rs11863726	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs11863726-G	NR	6E-24	(African)	0.104	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs76613236-?	0.9899	4E-10		0.4209	[0.29-0.55] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs76613236-?	0.995	1E-6		0.4235	[-1.15802-2.00502] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs76613236-?	0.98	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs76613236-?	0.9899	2E-27		0.2851	[0.23-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals	NA	16p13.3		rs76613236-?	0.98	6E-17		0.2721	[0.21-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs76613236-?	0.995	3E-12		0.2795	[0.2-0.36] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs76613236-?	0.9899	4E-50		5.4428	[4.73-6.16] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs76613236-?	0.98	5E-32		5.1303	[4.28-5.98] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs76613236-?	0.995	3E-21		5.22	[4.14-6.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs76613236-?	0.9899	4E-16		0.3823	[0.29-0.47] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	16p13.3		rs76613236-?	0.98	1E-8		0.2957	[0.19-0.4] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs76613236-?	0.9899	1E-52		2.1567	[1.88-2.43] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs76613236-?	0.98	7E-33		1.9943	[1.67-2.32] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs76613236-?	0.995	1E-26		2.0957	[1.71-2.48] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	230723	230724	rs76613236	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16p13.3		rs76613236-?	0.9899	8E-6		0.2172	[0.12-0.31] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	231020	231021	rs144961211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	HBQ1	rs144961211-G	0.013014	3E-9		0.0884187	[0.069-0.107] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00121899999999997	2E-49		0.61499137	[0.53-0.7] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00122199999999995	1E-32		0.486877	[0.41-0.57] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00122299999999997	4E-119		0.9438101	[0.86-1.02] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00121499999999997	5E-37		0.52481455	[0.44-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00121700000000002	4E-12		0.28820142	[0.21-0.37] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00121800000000005	3E-179		1.51946	[1.44-1.59] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00122299999999997	4E-90		1.10965	[1.03-1.19] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00121099999999996	2E-214		1.4630542	[1.37-1.55] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00122	1E-27		0.45079115	[0.37-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	HBA1, HBQ1, LA16c-OS12.2, Y_RNA	rs532398216-A	0.00122299999999997	1E-24		0.41788647	[0.34-0.5] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	232396	232400	rs532398216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16p13.3	HBA1, LA16c-OS12.2, HBQ1, Y_RNA	rs532398216-A	0.0013	4E-11		0.418998	[0.29-0.54] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	232396	232400	rs532398216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p13.3	HBA1, LA16c-OS12.2, HBQ1, Y_RNA	rs532398216-A	0.0013	7E-31		0.7246935	[0.6-0.85] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	232396	232400	rs532398216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	HBA1, LA16c-OS12.2, HBQ1, Y_RNA	rs532398216-A	0.0013	1E-85		1.218153	[1.1-1.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	232396	232400	rs532398216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	HBA1, LA16c-OS12.2, HBQ1, Y_RNA	rs532398216-A	0.0013	3E-52		0.924143	[0.8-1.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	232396	232400	rs532398216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	HBA1, LA16c-OS12.2, HBQ1, Y_RNA	rs532398216-A	0.0013	1E-109		1.390414	[1.27-1.51] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	238348	238348	rs556207545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	LA16c-OS12.2	rs556207545-CAAAAAAAA	0.809646	2E-13		0.071688	[0.066-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	238348	238348	rs556207545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	LA16c-OS12.2	rs556207545-C	0.809647	1E-55		0.0679219	[0.062-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs61743947-?	0.9979	2E-6		0.7066	[0.41-1] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs61743947-?	0.995	3E-8				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs61743947-?	0.9979	9E-12		5.6057	[4-7.22] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs61743947-?	0.9979	1E-11		0.7279	[0.52-0.94] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	16p13.3		rs61743947-?	0.9945	1E-9		0.8707	[0.59-1.15] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	239999	240000	rs61743947	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs61743947-?	0.9979	2E-13		2.2678	[1.66-2.87] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	240279	240280	rs1211375	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	LUC7L	rs1211375-A	0.326	5E-7		0.146	[0.089-0.203] pg decrease	Illumina [27801688] (imputed)	N
586	chr16	240279	240280	rs1211375	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs1211375-A	NR	1E-16		0.5254	[0.4-0.65] unit decrease	Illumina [544917]	N
586	chr16	240279	240280	rs1211375	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs1211375-A	NR	3E-17		0.2115	[0.16-0.26] unit decrease	Illumina [544917]	N
586	chr16	240279	240280	rs1211375	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs1211375-A	NR	7E-14	(RBC)	0.0423	[0.031-0.053] unit increase	Illumina [544917]	N
586	chr16	242413	242414	rs557311052	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	LUC7L	rs557311052-T	0.99593	8E-10		0.0753663	[0.051-0.099] unit increase	NR [13737936] (imputed)	N
586	chr16	242897	242898	rs111775488	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	LUC7L	rs111775488-C	0.0679	4E-38		0.09041719	[0.077-0.104] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	242897	242898	rs111775488	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	LUC7L	rs111775488-C	0.068	6E-68		0.1222341	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	243805	243805	rs371642320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	LUC7L	rs371642320-CT	0.490639	3E-39		0.0248889	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	243805	243805	rs371642320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	LUC7L	rs371642320-CT	0.4884	2E-11		0.02366286	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
586	chr16	244784	244785	rs78369087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p13.3	NR	rs78369087-A	NR	2E-10		0.04	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
586	chr16	248051	248052	rs865869983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	LUC7L	rs865869983-C	1.88999999999995E-4	9E-20		0.8215163	[0.64-1] unit increase	Affymetrix [93095623] (imputed)	N
586	chr16	248051	248052	rs865869983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	LUC7L	rs865869983-C	1.87000000000048E-4	9E-53		1.33485	[1.17-1.5] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	248051	248052	rs865869983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	LUC7L	rs865869983-C	1.90000000000023E-4	8E-30		1.02293	[0.85-1.2] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	248051	248052	rs865869983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	LUC7L	rs865869983-C	1.87000000000048E-4	1E-65		1.5422138	[1.37-1.72] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	249620	249621	rs372755452	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs372755452-A	0.01	2E-12		1.27	[0.92-1.62] unit increase	Illumina [92652022]	N
586	chr16	250183	250184	rs530159671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	LUC7L	rs530159671-A	0.00182400000000005	4E-21		0.30647814	[0.24-0.37] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	250183	250184	rs530159671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	LUC7L	rs530159671-A	0.00182300000000002	3E-14		0.24643676	[0.18-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
586	chr16	250183	250184	rs530159671	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16p13.3	HBA1, HBQ1	rs530159671-A		2E-16		0.31	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	5E-7		0.3628	[0.22-0.5] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs530159671-?	0.991	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs530159671-?	0.9945	2E-7		0.1424	[0.088-0.196] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	4E-10		0.2008	[0.14-0.26] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs530159671-?	0.9945	2E-16		3.0586	[2.33-3.79] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	4E-16		3.9345	[2.99-4.88] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	2E-10		0.4165	[0.29-0.55] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs530159671-?	0.9945	7E-12		0.4093	[0.29-0.53] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs530159671-?	0.9945	2E-24		1.4072	[1.14-1.68] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	8E-28		1.8413	[1.51-2.17] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	16p13.3		rs530159671-?	0.9914	9E-8		0.3677	[0.23-0.5] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16p13.3		rs530159671-?	0.9945	7E-8		0.3409	[0.22-0.47] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
586	chr16	250183	250184	rs530159671	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	16p13.3	LUC7L	rs530159671-A	0.0021	4E-10		0.3070906	[0.21-0.4] unit decrease	Affymetrix [~ 2500000] (imputed)	N
586	chr16	255384	255385	rs372125612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	8,185 South Asian ancestry individuals	NA	16p13.3	NR	rs372125612-A	0.0141135	2E-24		0.736306	[0.6-0.88] SD units decrease	Affymetrix, Illumina [28487724] (imputed)	N
586	chr16	257155	257156	rs1211377	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs1211377-?	NR	2E-18		0.04269	[0.033-0.052] unit increase novel	Illumina [6108953] (imputed)	N
587	chr16	265670	265671	rs911793100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	LUC7L	rs911793100-G	8.09999999999977E-5	3E-11		1.0379447	[0.73-1.34] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	265670	265671	rs911793100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	LUC7L	rs911793100-G	8.09999999999977E-5	2E-26		1.59375	[1.31-1.88] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	265670	265671	rs911793100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	LUC7L	rs911793100-G	8.09999999999977E-5	1E-9		0.947314	[0.64-1.25] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	265670	265671	rs911793100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	LUC7L	rs911793100-G	8.09999999999977E-5	6E-31		1.7960876	[1.49-2.1] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs145752042-?	0.993	3E-10				Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs145752042-?	0.9963	3E-19		5.9748	[4.67-7.28] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs145752042-?	0.9933	5E-8		5.3769	[3.44-7.31] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs145752042-?	0.9963	1E-18		2.2842	[1.78-2.79] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs145752042-?	0.9933	2E-8		2.2974	[1.5-3.09] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16p13.3		rs145752042-?	0.9963	2E-7		0.5187	[0.32-0.72] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	267207	267208	rs145752042	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	16p13.3		rs145752042-?	0.9933	3E-6		0.4828	[0.28-0.69] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	269905	269906	rs11641118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.3	LUC7L	rs11641118-G	0.193046	1E-34		0.035229605	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	269905	269906	rs11641118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p13.3	NR	rs11641118-A	0.806632	1E-49		0.037352	[0.032-0.042] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
587	chr16	269905	269906	rs11641118	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	16p13.3	LUC7L	rs11641118-G	0.1953	3E-14		0.03437478	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00600900000000004	2E-13		0.1320998	[0.097-0.167] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00600999999999996	4E-14		0.13552812	[0.1-0.17] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00601600000000002	3E-24		0.1807204	[0.15-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00600199999999995	4E-40		0.23742118	[0.2-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00601399999999996	1E-15		0.14246154	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	277398	277399	rs188132769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	LUC7L	rs188132769-A	0.00601600000000002	4E-16		0.14536975	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	281298	281299	rs3760047	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p13.3	NR	rs3760047-A	0.811773	1E-28		0.027152	[0.022-0.032] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
587	chr16	281298	281299	rs3760047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	Z69890.1	rs3760047-A	0.8098	6E-69		0.077834	[0.069-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	284985	284986	rs112832450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	ITFG3	rs112832450-T	5.90000000000313E-5	3E-17		1.5148904	[1.16-1.87] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	285999	286000	rs533614130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	ITFG3	rs533614130-G	5.06000000000006E-4	7E-10		0.33370656	[0.23-0.44] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	285999	286000	rs533614130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	ITFG3	rs533614130-G	5.02000000000002E-4	1E-25		0.479398	[0.38-0.58] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	285999	286000	rs533614130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	ITFG3	rs533614130-G	5.03000000000031E-4	3E-26		0.56458586	[0.46-0.67] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	285999	286000	rs533614130	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	ITFG3	rs533614130-G	9.0E-4	8E-9		0.3758689	[0.25-0.5] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	288043	288044	rs186692714	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	FAM234A	rs186692714-T	0.992246	2E-11		0.0606642	[0.043-0.078] unit increase	NR [13737936] (imputed)	N
587	chr16	288347	288348	rs182103652	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	FAM234A	rs182103652-C	0.999608	8E-10		0.206896	[0.14-0.27] unit increase	NR [13737936] (imputed)	N
587	chr16	288540	288541	rs187651195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	ITFG3	rs187651195-G	5.10000000000233E-5	2E-10		1.41991	[0.99-1.85] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	289693	289694	rs2858010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p13.3		rs2858010-C	NR	1E-24		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
587	chr16	293561	293562	rs11248914	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16p13.3	ITFG3	rs11248914-T	0.6637	1E-14		0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
587	chr16	293561	293562	rs11248914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	ITFG3	rs11248914-C	0.336485	1E-17		0.024153851	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	293561	293562	rs11248914	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	16p13.3	ITFG3	rs11248914-T	0.647	3E-14		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
587	chr16	293592	293593	rs76792961	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs76792961-?	NR	7E-26				Illumina [20594536] (imputed)	N
587	chr16	295794	295795	rs6600191	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16p13.3	ITFG3	rs6600191-T	0.8246	9E-13		1.06	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs60616598-?	0.8982	2E-9		0.1366	[0.092-0.181] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs60616598-?	0.963	2E-6		0.1599	[0.094-0.226] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs60616598-?	0.96	3E-9				Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs60616598-?	0.83	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs60616598-?	0.8982	1E-8		0.0503	[0.033-0.068] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs60616598-?	0.8982	2E-16		0.9611	[0.73-1.19] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs60616598-?	0.8341	2E-11		0.9493	[0.67-1.23] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs60616598-?	0.963	7E-8		1.0807	[0.69-1.47] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	16p13.3		rs60616598-?	0.963	1E-7		0.1671	[0.11-0.23] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs60616598-?	0.8982	2E-11		0.1076	[0.076-0.139] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	16p13.3		rs60616598-?	0.8341	1E-6		0.0843	[0.05-0.118] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs60616598-?	0.8982	8E-23		0.4482	[0.36-0.54] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs60616598-?	0.8341	6E-16		0.4365	[0.33-0.54] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	297263	297264	rs60616598	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs60616598-?	0.963	3E-10		0.5016	[0.35-0.66] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	298587	298588	rs13339636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	3,518 Hispanic or Latin American individuals	NA	16p13.3	NR	rs13339636-A	0.968626	1E-19		0.646387	[0.51-0.79] SD units increase	Affymetrix, Illumina [24999652] (imputed)	N
587	chr16	298587	298588	rs13339636	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	16p13.3	ITFG3	rs13339636-?	NR	1E-8				NR [2500000] (imputed)	N
587	chr16	298587	298588	rs13339636	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	16p13.3	ITFG3	rs13339636-?	NR	1E-46				NR [2500000] (imputed)	N
587	chr16	298587	298588	rs13339636	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	16p13.3	ITFG3	rs13339636-?	NR	1E-8				NR [2500000] (imputed)	N
587	chr16	298587	298588	rs13339636	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	16p13.3	ITFG3	rs13339636-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
587	chr16	298587	298588	rs13339636	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3, POLR3K, NPRL3, MPG, NME4, LUCL7, DECR, RPL2B	rs13339636-G	0.132	2E-34	(MCH, AA)	0.6847	[0.58-0.79] pg decrease	Affymetrix, Illumina [NR]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	4E-19		0.35	[0.27-0.43] unit increase	Illumina [76131582]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	3E-77		0.18	[0.16-0.2] unit increase	Illumina [92652022]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	6E-205		3.72	[3.48-3.96] unit decrease	Illumina [97506867]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	6E-96		0.4	[0.36-0.44] unit decrease	Illumina [101200590]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	4E-227		1.6	[1.5-1.7] unit decrease	Illumina [94681438]	N
587	chr16	299922	299923	rs13331259	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs13331259-G	NR	1E-31		0.27	[0.23-0.31] unit decrease	Illumina [110351653]	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	13,519 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.892494	2E-36		0.248982	[0.21-0.29] SD units decrease	Affymetrix, Illumina [36660117] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.996444	2E-113				Affymetrix, Illumina [24332387] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	14,222 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.89299	3E-96		0.397438	[0.36-0.43] SD units decrease	Affymetrix, Illumina [36679691] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	16p13.3	NR	rs13331259-A	0.989639	8E-22		0.707162	[0.56-0.85] SD units increase	Affymetrix, Illumina [26810224] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	12,766 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.884309	2E-139		0.491855	[0.45-0.53] SD units increase	Affymetrix, Illumina [36221496] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.883526	2E-239		0.655685	[0.62-0.69] SD units increase	Affymetrix, Illumina [36043646] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.996246	7E-38				Affymetrix, Illumina [24653286] (imputed)	N
587	chr16	299922	299923	rs13331259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	15,133 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs13331259-A	0.893055	3E-41		0.249512	[0.21-0.29] SD units increase	Affymetrix, Illumina [36870618] (imputed)	N
587	chr16	299922	299923	rs13331259	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Mean corpuscular volume	up to 7,526 African ancestry individuals	NA	16p13.3		rs13331259-A	0.897	3E-38		0.65	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
587	chr16	299922	299923	rs13331259	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Mean corpuscular hemoglobin	up to 7,526 African ancestry individuals	NA	16p13.3		rs13331259-A	0.897	9E-44		0.7	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
587	chr16	299922	299923	rs13331259	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Red blood cell count	1,625 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs13331259-?	NR	5E-8				Illumina [20594536] (imputed)	N
587	chr16	299922	299923	rs13331259	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Mean corpuscular volume	1,625 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs13331259-?	NR	5E-8				Illumina [20594536] (imputed)	N
587	chr16	299922	299923	rs13331259	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Mean corpuscular hemoglobin concentration	1,625 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs13331259-?	NR	5E-8				Illumina [20594536] (imputed)	N
587	chr16	299922	299923	rs13331259	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Mean corpuscular hemoglobin	1,625 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs13331259-?	NR	5E-8				Illumina [20594536] (imputed)	N
587	chr16	299922	299923	rs13331259	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	16p13.3	ITFG3	rs13331259-?	NR	8E-30				Illumina [20594536] (imputed)	N
587	chr16	300387	300388	rs55857387	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p13.3	NR	rs55857387-C	0.1947	7E-19		0.0524	[0.041-0.064] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
587	chr16	300387	300388	rs55857387	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p13.3	NR	rs55857387-C	0.2537	2E-21		0.0441	[0.035-0.053] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
587	chr16	300640	300641	rs9940149	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	16p13.3	ITFG3	rs9940149-A	0.1722	1E-7		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
587	chr16	300640	300641	rs9940149	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	16p13.3	FAM234A	rs9940149-A	0.17855594571223	9E-10		0.058	[0.039-0.077] unit decrease	NR [5035015] (imputed)	N
587	chr16	300640	300641	rs9940149	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16p13.3	ITFG3	rs9940149-G	0.83	1E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
587	chr16	300640	300641	rs9940149	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16p13.3	ITFG3	rs9940149-A	0.173	4E-6	(EA)	0.0622	[0.036-0.088] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
587	chr16	302160	302161	rs151330263	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Mean corpuscular hemoglobin concentration	up to 7,526 African ancestry individuals	NA	16p13.3		rs151330263-A	0.931	8E-13		0.51	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
587	chr16	302160	302161	rs151330263	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Bilirubin levels	14,126 African ancestry individuals	NA	16p13.3		rs151330263-A	0.928	2E-12		0.235799	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
587	chr16	304802	304803	rs7189020	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	16p13.3	ITFG3	rs7189020-T	NR	2E-12		0.0	[0.002-0.004] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr16	306242	306243	rs4374177	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NR	rs4374177-?	NR	2E-14		0.0354	[0.026-0.044] unit increase novel	Illumina [6108953] (imputed)	N
587	chr16	308001	308002	rs8045544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	9,302 Hispanic or Latin American individuals	NA	16p13.3	NR	rs8045544-G	0.980731	1E-14		0.420624	[0.31-0.53] SD units decrease	Affymetrix, Illumina [26810348] (imputed)	N
587	chr16	309154	309155	rs1122794	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	16p13.3	ITFG3	rs1122794-?	NR	2E-21				NR [2500000] (imputed)	N
587	chr16	309154	309155	rs1122794	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3	rs1122794-A	0.1984	1E-8	(MCHC)	0.1598	[0.10-0.22] d/dL increase	Affymetrix, Illumina [NR]	N
587	chr16	309154	309155	rs1122794	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3	rs1122794-A	0.1955	7E-6	(MCH)	0.2281	[0.13-0.33] pg increase	Affymetrix, Illumina [NR]	N
587	chr16	309154	309155	rs1122794	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	16p13.3	ITFG3	rs1122794-A	NR	3E-10		0.0	[0.003-0.006] pg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr16	310004	310005	rs13335497	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs13335497-A	NR	5E-48	(African)	0.233	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
587	chr16	310379	310380	rs13335629	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs13335629-A	NR	1E-43	(African)	0.208	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
587	chr16	310379	310380	rs13335629	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	16p13.3	NR	rs13335629-?	NR	5E-32		0.3559012	[0.3-0.42] unit decrease	Illumina [27815891] (imputed)	N
587	chr16	310379	310380	rs13335629	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Red blood cell count	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	ITFG3, FAM234A	rs13335629-A	0.014	2E-13		0.149	[0.11-0.19] cells x E9 increase	Illumina [27801688] (imputed)	N
587	chr16	310379	310380	rs13335629	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3, RHOT2, LMF1, WDR90, POLR3K, NPRL3, MPG, NME4, LUCL7, DECR, RPL2B	rs13335629-A	0.134	4E-22	(MCV, AA)	0.648	[0.52-0.78] fL decrease	Affymetrix, Illumina [NR]	N
587	chr16	310379	310380	rs13335629	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3, POLR3K, NPRL3, MPG, NME4, LUCL7, DECR, RPL2B	rs13335629-A	0.117	9E-48	(MCHC, AA)	0.3298	[0.29-0.37] g/dL decrease	Affymetrix, Illumina [NR]	N
587	chr16	310379	310380	rs13335629	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3, POLR3K, NPRL3, MPG, LUCL7, RPL2B	rs13335629-A	0.12	3E-23	(Hgb, AA)	0.19	[0.15-0.23] g/dL decrease	Affymetrix, Illumina [NR]	N
587	chr16	310379	310380	rs13335629	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	16p13.3	ITFG3, LUCL7	rs13335629-A	0.12	7E-24	(RBC, AA)	0.1699	[0.14-0.20] x10^6/uL, increase	Affymetrix, Illumina [NR]	N
587	chr16	312014	312015	rs2239741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	16p13.3		rs2239741-C	NR	1E-15		0.026	[0.02-0.032] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
587	chr16	314779	314780	rs9924561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	ITFG3	rs9924561-T	1.3300000000005E-4	6E-14		0.893583	[0.68-1.11] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs9924561-?	0.9412	8E-20		0.2675	[0.21-0.32] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals	NA	16p13.3		rs9924561-?	0.9027	4E-9		0.216	[0.14-0.29] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	2E-13		0.349	[0.26-0.44] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs9924561-?	0.91	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs9924561-?	0.9412	3E-53		0.1645	[0.14-0.19] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals	NA	16p13.3		rs9924561-?	0.9027	7E-41		0.1622	[0.14-0.19] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	1E-14		0.1622	[0.12-0.2] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs9924561-?	0.9412	3E-142		3.7073	[3.42-3.99] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs9924561-?	0.9027	2E-110		3.6686	[3.35-3.99] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	2E-34		3.6573	[3.07-4.24] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	4E-23		0.4657	[0.37-0.56] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs9924561-?	0.9412	8E-87		0.3738	[0.34-0.41] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	16p13.3		rs9924561-?	0.9027	1E-71		0.3569	[0.32-0.4] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs9924561-?	0.9412	1E-167		1.5441	[1.43-1.65] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs9924561-?	0.9027	8E-125		1.4824	[1.36-1.6] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	5E-48		1.6572	[1.43-1.88] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	16p13.3		rs9924561-?	0.9866	1E-8		0.3025	[0.2-0.41] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16p13.3		rs9924561-?	0.9412	3E-22		0.1968	[0.16-0.24] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	16p13.3		rs9924561-?	0.9027	3E-18		0.1814	[0.14-0.22] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	314779	314780	rs9924561	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	16p13.3	NR	rs9924561-T	NR	2E-49	(African)	0.238	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
587	chr16	314779	314780	rs9924561	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	16p13.3	NR	rs9924561-?	NR	4E-41		0.4349953	[0.37-0.5] unit decrease	Illumina [27815891] (imputed)	N
587	chr16	314779	314780	rs9924561	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	FAM234A, ITFG3	rs9924561-T	0.0122	6E-30		3.883	[3.21-4.55] fL decrease	Illumina [27801688] (imputed)	N
587	chr16	314779	314780	rs9924561	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	ITFG3, FAM234A	rs9924561-T	0.0122	3E-12		0.553	[0.4-0.71] g/dL decrease	Illumina [27801688] (imputed)	N
587	chr16	314779	314780	rs9924561	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16p13.3	FAM234A	rs9924561-T	0.0122	4E-42		1.719	[1.47-1.97] pg decrease	Illumina [27801688] (imputed)	N
587	chr16	314779	314780	rs9924561	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	ITFG3	rs9924561-T	0.10	9E-17	(MCHC)	0.47	[0.35-0.59] unit decrease	Illumina [907954]	N
587	chr16	314779	314780	rs9924561	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	ITFG3	rs9924561-T	0.10	8E-36	(MCH)	1.56	[1.32-1.80] pg decrease	Illumina [907954]	N
587	chr16	314779	314780	rs9924561	23696099	Ding K	2013-05-20	G3 (Bethesda)	Genetic variants that confer resistance to malaria are associated with red blood cell traits in African-Americans: an electronic medical record-based genome-wide association study.	Red blood cell traits	1904 African American individuals	411 African American individuals	16p13.3	ITFG3	rs9924561-T	0.10	5E-29	(MCV)	3.57	[2.94-4.20] fL decrease	Illumina [907954]	N
587	chr16	316859	316860	rs739997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	ITFG3	rs739997-C	2.21000000000027E-4	3E-9		0.61338216	[0.41-0.82] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	316899	316900	rs874283	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	NR	rs874283-?	NR	5E-6		4.563	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
587	chr16	318473	318474	rs3743879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs3743879-?	NR	2E-14				NR [~ 8900000] (imputed)	N
587	chr16	318473	318474	rs3743879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs3743879-?	NR	8E-69				NR [~ 8900000] (imputed)	N
587	chr16	324478	324479	rs3752435	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	16p13.3	RGS11	rs3752435-C	0.8273	5E-9		0.0342	[0.023-0.046] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
587	chr16	333718	333719	rs573620537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	PDIA2	rs573620537-C	1.55000000000016E-4	5E-20		0.87158906	[0.69-1.06] unit increase	Affymetrix [93095623] (imputed)	N
587	chr16	333718	333719	rs573620537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	PDIA2	rs573620537-C	1.55000000000016E-4	9E-12		0.6569537	[0.47-0.85] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	333718	333719	rs573620537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	PDIA2	rs573620537-C	1.52000000000041E-4	4E-44		1.32842	[1.15-1.5] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	333718	333719	rs573620537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	PDIA2	rs573620537-C	1.55000000000016E-4	3E-23		0.962888	[0.78-1.15] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	333718	333719	rs573620537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	PDIA2	rs573620537-C	1.51000000000012E-4	2E-53		1.4801668	[1.29-1.67] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	333718	333719	rs573620537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	3,518 Hispanic or Latin American individuals	NA	16p13.3	NR	rs573620537-G	0.98838	3E-14		0.954	[0.71-1.2] SD units increase	Affymetrix, Illumina [24999636] (imputed)	N
587	chr16	334579	334580	rs432925	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	16p13.3	NR	rs432925-?	NR	6E-6				Illumina [7427422] (imputed)	N
587	chr16	337654	337655	rs45530432	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	16p13.3	NR	rs45530432-G	NR	2E-10		0.0414	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr16	339671	339672	rs412243	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.3	AXIN1	rs412243-T	0.621245	1E-13		0.0104789	[0.0077-0.0133] unit increase	Affymetrix [12370749]	N
587	chr16	342770	342771	rs12928131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p13.3		rs12928131-?	NR	8E-11				NR [~ 8900000] (imputed)	N
587	chr16	347062	347063	rs117208012	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	AXIN1	rs117208012-C	0.97924	1E-30		0.0747902	[0.062-0.088] unit increase	NR [13737936] (imputed)	N
587	chr16	347062	347063	rs117208012	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.3	NR	rs117208012-T	0.0213903	7E-9		0.0619786	[0.041-0.083] unit decrease	NR [19129689] (imputed)	N
587	chr16	347062	347063	rs117208012	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs117208012-?	NR	2E-41		0.0951165	[0.081-0.109] unit increase	Affymetrix [20259828] (imputed)	N
587	chr16	347062	347063	rs117208012	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	16p13.3	AXIN1	rs117208012-T	0.0349	5E-10		0.187	(0.246-0.128) unit decrease	Illumina [19689642] (imputed)	N
587	chr16	349292	349293	rs214246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p13.3		rs214246-G	0.380514	6E-13		0.0149299	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
587	chr16	349292	349293	rs214246	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	AXIN1	rs214246-?	NR	1E-14		0.022662878	[0.017-0.028] unit decrease	Illumina [27896057] (imputed)	N
587	chr16	349330	349331	rs7200589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.3		rs7200589-A	NR	7E-14		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
587	chr16	349330	349331	rs7200589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p13.3	NA	rs7200589-A	0.2623	4E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
587	chr16	354352	354353	rs142097791	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	AXIN1	rs142097791-G	0.999	2E-9		0.172273	[0.12-0.23] unit increase	NR [13737936] (imputed)	N
587	chr16	354636	354637	rs534851766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	AXIN1	rs534851766-T	7.90000000000513E-5	4E-10		1.13029	[0.81-1.45] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	354636	354637	rs534851766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	AXIN1	rs534851766-T	7.90000000000513E-5	4E-11		1.1494659	[0.81-1.49] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	355774	355775	rs556175248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	AXIN1	rs556175248-C	2.95000000000045E-4	5E-9		0.582151	[0.39-0.78] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	355774	355775	rs556175248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	AXIN1	rs556175248-C	2.92999999999988E-4	2E-10		0.633874	[0.44-0.83] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	357298	357299	rs767932573	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16p13.3	LUC7L	rs767932573-A	NR	2E-10		0.437753	[0.31-0.57] unit increase	Affymetrix [16832071] (imputed)	N
587	chr16	357298	357299	rs767932573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	AXIN1	rs767932573-A	0.0013	1E-46		0.8079803	[0.7-0.92] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	357743	357744	rs781191470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	AXIN1	rs781191470-A	3.72000000000039E-4	1E-27		1.55983	[1.45-1.67] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	357743	357744	rs781191470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	AXIN1	rs781191470-A	3.72000000000039E-4	7E-33		0.81295526	[0.68-0.95] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	357743	357744	rs781191470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	16p13.3	AXIN1	rs781191470-A	0.0013	1E-12		0.4071626	[0.3-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr16	357743	357744	rs781191470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	AXIN1	rs781191470-A	0.0013	5E-82		1.092064	[0.98-1.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	357743	357744	rs781191470	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	AXIN1	rs781191470-A	0.0013	3E-102		1.228592	[1.12-1.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	357870	357871	rs187555279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p13.3	AXIN1	rs187555279-T	0.0076	2E-9		0.1249188	[0.084-0.166] unit increase	Affymetrix [~ 2500000] (imputed)	N
587	chr16	359566	359567	rs11644916	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	16p13.3	AXIN1	rs11644916-?		4E-6		1.4	[1.20-1.59]	Illumina [540021]	N
587	chr16	359952	359953	rs2301522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.3		rs2301522-G	NR	5E-13		0.0125	[0.0092-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
587	chr16	359952	359953	rs2301522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p13.3		rs2301522-G	NR	5E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
587	chr16	359952	359953	rs2301522	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs2301522-?	NR	8E-41		0.0277694	[0.023-0.032] unit increase	Affymetrix [20259828] (imputed)	N
587	chr16	359952	359953	rs2301522	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	AXIN1	rs2301522-A	0.338636	6E-11	(women)	0.0316868	[0.022-0.041] unit increase	NR [17166351] (imputed)	N
587	chr16	359952	359953	rs2301522	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	AXIN1	rs2301522-A	0.338085	2E-16		0.0297734	[0.023-0.037] unit increase	NR [17166351] (imputed)	N
587	chr16	359952	359953	rs2301522	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	AXIN1	rs2301522-A	0.337455	2E-8	(men)	0.0281405	[0.017-0.039] unit increase	NR [17166351] (imputed)	N
587	chr16	364127	364128	rs9924506	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NR	rs9924506-?	NR	2E-7		0.02749	[0.017-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
587	chr16	364127	364128	rs9924506	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs9924506-?	NR	3E-11	(conditional on round 5)	0.034760952	[0.025-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	16,802 African American individuals	NA	16p13.3	NR	rs142154093-?	0.98	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs142154093-?	0.9877	6E-13		0.1751	[0.13-0.22] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals	NA	16p13.3		rs142154093-?	0.98	4E-8		0.1598	[0.1-0.22] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs142154093-?	0.994	8E-6		0.1721	[0.097-0.248] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs142154093-?	0.9877	5E-33		4.1794	[3.5-4.86] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals	NA	16p13.3		rs142154093-?	0.98	4E-23		3.9907	[3.2-4.78] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs142154093-?	0.994	1E-9		3.4802	[2.35-4.61] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs142154093-?	0.9877	2E-12		0.3356	[0.24-0.43] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals	NA	16p13.3		rs142154093-?	0.98	1E-9		0.3026	[0.21-0.4] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs142154093-?	0.9877	1E-32		1.6834	[1.41-1.96] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals	NA	16p13.3		rs142154093-?	0.98	2E-23		1.5478	[1.24-1.85] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs142154093-?	0.994	2E-10		1.4546	[1-1.9] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16p13.3		rs142154093-?	0.9877	4E-7		0.2491	[0.15-0.35] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	366047	366048	rs142154093	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	16p13.3		rs142154093-?	0.98	6E-6		0.2353	[0.13-0.34] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
587	chr16	372634	372635	rs3848364	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	AXIN1	rs3848364-T	0.7342	2E-11		0.0144	[0.01-0.019] unit increase	Affymetrix [18391927] (imputed)	N
587	chr16	373000	373001	rs55705600	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16p13.3	AXIN1	rs55705600-C	0.179619	5E-7		0.204588	[0.12-0.28] unit decrease	Affymetrix [9463307] (imputed)	N
587	chr16	373000	373001	rs55705600	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	16p13.3	AXIN1	rs55705600-C	0.179619	6E-6		0.282772	[0.16-0.41] unit decrease	Affymetrix [9463307] (imputed)	N
587	chr16	375781	375782	rs9921222	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	16p13.3	AXIN1	rs9921222-C	0.492	1E-12		0.025	[0.018-0.032] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
587	chr16	375781	375782	rs9921222	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	AXIN1	rs9921222-C	0.531097	9E-24		0.0190403	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
587	chr16	375781	375782	rs9921222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs9921222-?	NR	8E-19				NR [~ 8900000] (imputed)	N
587	chr16	375781	375782	rs9921222	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	16p13.3	AXIN1	rs9921222-C	0.47	5E-7		0.059	[0.035-0.083] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
587	chr16	375781	375782	rs9921222	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	16p13.3	AXIN1	rs9921222-C	0.47	3E-6		0.058	[0.034-0.082] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
587	chr16	375781	375782	rs9921222	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	16p13.3	AXIN1	rs9921222-C	0.427	5E-8		0.07	[0.070-0.070] unit increase	Illumina [19689642] (imputed)	N
587	chr16	375781	375782	rs9921222	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.3	AXIN1	rs9921222-T	0.48	1E-16		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
587	chr16	377366	377367	rs10794639	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p13.3		rs10794639-G	0.42	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
587	chr16	377366	377367	rs10794639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	16p13.3		rs10794639-G	NR	3E-8		0.0686	[0.044-0.093] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
587	chr16	377492	377493	rs552809365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	AXIN1	rs552809365-A	1.10000000000055E-4	6E-27		1.40343	[1.16-1.64] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	377492	377493	rs552809365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	AXIN1	rs552809365-A	1.10000000000055E-4	5E-14		1.01168	[0.76-1.27] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	377492	377493	rs552809365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	AXIN1	rs552809365-A	1.10000000000055E-4	2E-32		1.5461226	[1.29-1.8] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	381140	381141	rs12719801	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16p13.3	AXIN1	rs12719801-T	0.356265	6E-9		0.048	[0.032-0.064] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
587	chr16	381140	381141	rs12719801	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16p13.3	AXIN1	rs12719801-T	0.356265	1E-9		0.044	[0.03-0.058] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
587	chr16	382990	382991	rs182152244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	AXIN1	rs182152244-G	3.0E-4	5E-14		0.8805541	[0.65-1.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	382990	382991	rs182152244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	AXIN1	rs182152244-G	3.0E-4	7E-14		0.8579539	[0.63-1.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	382990	382991	rs182152244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	AXIN1	rs182152244-G	3.0E-4	5E-21		1.103614	[0.87-1.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
587	chr16	387866	387867	rs11866815	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs11866815-T	0.2568	2E-16		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
587	chr16	387866	387867	rs11866815	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p13.3	NR	rs11866815-C	NR	2E-7		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
587	chr16	387866	387867	rs11866815	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p13.3	DDX11L10, POLR3K, SNRNP25, RHBDF1, HBZ, HBM, HBA2, HBA1, ITFG3, RGS11, ARHGDIG, PDIA2, MRPL28, TMEM8A, NME4, DECR2, LINC00235, SOLH, MIR5587, MIR3176, WDR90, FAM195A, RHOT2, RHBDL1, MSLN, MIR662, RPUSD1, CHTF18	rs11866815-T	0.236510378283325	5E-11		0.02079587	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
587	chr16	387866	387867	rs11866815	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	AXIN1	rs11866815-C	0.763	2E-7	(EA)	0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
587	chr16	387866	387867	rs11866815	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	AXIN1	rs11866815-C	0.763	1E-7	(EA, women)	0.024	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
587	chr16	387866	387867	rs11866815	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	AXIN1	rs11866815-C	0.754	2E-6		0.016	[0.0096-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
587	chr16	388697	388698	rs569635361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	AXIN1	rs569635361-A	1.57999999999991E-4	6E-12		1.25004	[1.09-1.41] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	388697	388698	rs569635361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	AXIN1	rs569635361-A	1.5900000000002E-4	3E-12		1.1001	[0.93-1.27] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	388697	388698	rs569635361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	AXIN1	rs569635361-A	1.56999999999963E-4	1E-18		0.8123801	[0.63-0.99] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr16	392317	392318	rs8047501	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	16p13.3	NR	rs8047501-A	0.4946	7E-18	(European)	0.0559	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
587	chr16	392317	392318	rs8047501	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	16p13.3	NR	rs8047501-A	0.4923	1E-18		0.0524	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
588	chr16	394342	394343	rs13331491	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p13.3	NR	rs13331491-T	0.2561	6E-10		0.017638825	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs186066503-?	0.9959	3E-6		0.427	[0.25-0.61] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	16p13.3		rs186066503-?	0.989	4E-6		0.405	[0.23-0.58] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	20,697 Hispanic or Latin American individuals	NA	16p13.3	NR	rs186066503-?	0.994	1E-11				Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs186066503-?	0.9959	3E-15		0.2684	[0.2-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	16p13.3		rs186066503-?	0.989	6E-13		0.2464	[0.18-0.31] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	16p13.3		rs186066503-?	0.9959	3E-19		4.5701	[3.57-5.57] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	16p13.3		rs186066503-?	0.989	1E-19		4.5164	[3.54-5.49] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	16p13.3		rs186066503-?	0.989	1E-20		0.743	[0.59-0.9] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16p13.3		rs186066503-?	0.9959	4E-18		0.7504	[0.58-0.92] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16p13.3		rs186066503-?	0.9959	4E-30		2.201	[1.82-2.58] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	405482	405483	rs186066503	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	16p13.3		rs186066503-?	0.989	2E-32		2.1949	[1.83-2.56] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
588	chr16	406426	406427	rs12926311	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16p13.3	AXIN1	rs12926311-C	0.35585001	5E-9		0.190812	[0.13-0.25] unit decrease	Affymetrix [9463307] (imputed)	N
588	chr16	407548	407549	rs34676698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs34676698-?	NR	4E-47				NR [~ 8900000] (imputed)	N
588	chr16	407722	407723	rs7201895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs7201895-?	NR	1E-13				NR [~ 8900000] (imputed)	N
588	chr16	407799	407800	rs7206329	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs7206329-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
588	chr16	410177	410178	rs71378512	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs71378512-?	NR	5E-77		0.0988047	[0.088-0.109] unit increase	Affymetrix [20259828] (imputed)	N
588	chr16	410177	410178	rs71378512	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	MRPL28	rs71378512-G	0.948514	5E-11	(men)	0.0915508	[0.065-0.118] unit increase	NR [17166351] (imputed)	N
588	chr16	410177	410178	rs71378512	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	MRPL28	rs71378512-G	0.948313	1E-25		0.0946297	[0.077-0.112] unit increase	NR [17166351] (imputed)	N
588	chr16	410177	410178	rs71378512	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p13.3	MRPL28	rs71378512-G	0.948138	2E-17	(women)	0.10184	[0.078-0.126] unit increase	NR [17166351] (imputed)	N
588	chr16	417288	417289	rs62033860	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs62033860-?	NR	8E-9	(conditional on round 7)	0.043631464	[0.029-0.058] unit increase novel	Illumina [6108953] (imputed)	N
588	chr16	423422	423423	rs5020353	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs5020353-G	0.32474	3E-13		0.209	[0.15-0.26] unit decrease	Illumina [17945511] (imputed)	N
588	chr16	423422	423423	rs5020353	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs5020353-G	0.32474	2E-21		0.2745	[0.22-0.33] unit decrease	Illumina [17945511] (imputed)	N
588	chr16	423554	423555	rs1573733	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM2	5,361 Icelandic ancestry individuals	NA	16p13.3		rs1573733-G	0.4065	5E-15		0.14936	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
588	chr16	423554	423555	rs1573733	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs1573733-G	0.4065	3E-24		0.191868	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
588	chr16	423618	423619	rs1573734	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs1573734-T	0.32696	2E-8		0.1614	[0.11-0.22] unit decrease	Illumina [17954496] (imputed)	N
588	chr16	423618	423619	rs1573734	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs1573734-T	0.32696	2E-10		0.182	[0.13-0.24] unit decrease	Illumina [17954496] (imputed)	N
588	chr16	423695	423696	rs1573735	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs1573735-T	0.32643	4E-13		0.2069	[0.15-0.26] unit decrease	Illumina [17954496] (imputed)	N
588	chr16	423808	423809	rs117037628	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs117037628-G	0.29985	9E-9		0.1647	[0.11-0.22] unit decrease	Illumina [17954496] (imputed)	N
588	chr16	423812	423813	rs28461437	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	TMEM8A	rs28461437-G	0.596	1E-15	(Neural cell adhesion molecule 2, NCAM2.6507.16.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
588	chr16	424276	424277	rs3743887	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16p13.3	TMEM8A	rs3743887-G	0.931282	2E-23		0.00988529	[0.0079-0.0119] unit decrease	Affymetrix [13995440] (imputed)	N
588	chr16	424276	424277	rs3743887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.3	NR	rs3743887-A	NR	2E-18		0.04	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
588	chr16	427478	427479	rs11248931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.3	NR	rs11248931-C	NR	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
588	chr16	427757	427758	rs199670311	29207912	Nishizawa D	2017-12-06	Pharmacogenomics	Genome-wide scan identifies candidate loci related to remifentanil requirements during laparoscopic-assisted colectomy.	Opioid requirements during laparoscopic-assisted colectomy	117 Japanese ancestry patients	234 Japanese ancestry patients	16p13.3	TMEM8A	rs199670311-A	NR	3E-8	(dominant model)	0.1329	unit increase	Illumina [921239]	N
588	chr16	428085	428086	rs577420328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	TMEM8A	rs577420328-T	2.99000000000049E-4	7E-9		0.5925555	[0.39-0.79] unit increase	Affymetrix [93095623] (imputed)	N
588	chr16	428085	428086	rs577420328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	TMEM8A	rs577420328-T	2.99000000000049E-4	5E-22		0.897334	[0.71-1.08] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr16	428085	428086	rs577420328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	TMEM8A	rs577420328-T	2.99000000000049E-4	9E-16		0.867447	[0.67-1.07] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr16	428085	428086	rs577420328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	TMEM8A	rs577420328-T	2.9800000000002E-4	4E-26		1.0830935	[0.88-1.28] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr16	430303	430304	rs12921174	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs12921174-C	0.20241	1E-8		0.1937	[0.13-0.26] unit decrease	Illumina [17945511] (imputed)	N
588	chr16	430303	430304	rs12921174	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs12921174-C	0.20218	1E-9		0.2044	[0.14-0.27] unit decrease	Illumina [17954450] (imputed)	N
588	chr16	430468	430469	rs2003830	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.3		rs2003830-G	0.20472	4E-10		0.2093	[0.14-0.27] unit decrease	Illumina [17945511] (imputed)	N
588	chr16	433077	433078	rs11864644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs11864644-?	NR	8E-20				NR [~ 8900000] (imputed)	N
588	chr16	451305	451306	rs1698237	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p13.3	DECR2	rs1698237-C	0.5	2E-12	(X - 24339)	0.179	[0.13-0.23] unit increase	Illumina [7750367] (imputed)	N
588	chr16	456482	456483	rs3785290	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs3785290-T	0.4024	5E-9	(DECR2)	0.01861	NR unit increase	Illumina [1671387] (imputed)	N
588	chr16	461482	461483	rs146760080	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	16p13.3	DECR2	rs146760080-C	0.373	2E-12		0.04		Illumina [243345]	N
588	chr16	468183	468184	rs12443594	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs12443594-T	0.4739	7E-17	(DECR2)	0.02503	NR unit decrease	Illumina [1671387] (imputed)	N
588	chr16	468808	468809	rs191960441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs191960441-?	NR	3E-15				NR [~ 8900000] (imputed)	N
588	chr16	495661	495662	rs11645697	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16p13.3	NR	rs11645697-T	0.442	8E-6	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
588	chr16	495661	495662	rs11645697	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs11645697-T	0.4983	3E-11	(DECR2)	0.02154	NR unit increase	Illumina [1671387] (imputed)	N
588	chr16	498906	498908	rs866153759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs866153759-A	0.076139	6E-23		0.04272493	[0.034-0.051] unit increase	Affymetrix [93095623] (imputed)	N
588	chr16	498908	498910	rs140249978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p13.3		rs140249978-A	NR	5E-30		0.0449	[0.037-0.053] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
588	chr16	501361	501362	rs3852766	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs3852766-T	0.4495	1E-8	(DECR2)	0.0186	NR unit decrease	Illumina [1671387] (imputed)	N
588	chr16	505611	505612	rs9926557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16p13.3		rs9926557-T	0.922	9E-16				Affymetrix [10369434] (imputed)	N
588	chr16	505953	505954	rs78450122	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	16p13.3	RAB11FIP3	rs78450122-?	NR	8E-6		0.961	[0.29-1.63] unit increase	Illumina [at least 13000000] (imputed)	N
588	chr16	510416	510417	rs12932244	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs12932244-T	0.3902	2E-9	(DECR2)	0.01997	NR unit decrease	Illumina [1671387] (imputed)	N
588	chr16	511336	511337	rs1203039	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p13.3	NR	rs1203039-?	NR	5E-9		0.0395	[0.026-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
588	chr16	511336	511337	rs1203039	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs1203039-?	NR	6E-9		0.03941	[0.026-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
589	chr16	524304	524305	rs3785303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs3785303-G	0.078138	2E-32		0.049999826	[0.042-0.058] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	525811	525812	rs7206447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p13.3	NR	rs7206447-T	0.076919	2E-38		0.046836	[0.04-0.054] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
589	chr16	527484	527485	rs28678897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs28678897-A	0.077967	2E-9		0.02519159	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	527484	527485	rs28678897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs28678897-A	0.117407	7E-43				Affymetrix, Illumina [24588908] (imputed)	N
589	chr16	527484	527485	rs28678897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs28678897-G	0.922173	3E-15				Affymetrix, Illumina [17210439] (imputed)	N
589	chr16	530966	530967	rs141759085	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16p13.3	RAB11FIP3	rs141759085-G	0.081	9E-13		0.04795386	[0.035-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
589	chr16	534356	534356	rs570885979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs570885979-AT	0.080708	1E-26		0.045100514	[0.037-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	534356	534356	rs570885979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p13.3	NR	rs570885979-I	0.080487	1E-14		0.028746	[0.021-0.036] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
589	chr16	534794	534795	rs529967472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs529967472-C	1.20000000000009E-4	8E-12		0.914261	[0.67-1.16] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	534794	534795	rs529967472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	RAB11FIP3	rs529967472-C	1.20000000000009E-4	2E-15		1.0748503	[0.81-1.34] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	536089	536090	rs7191868	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16p13.3	RAB11FIP3	rs7191868-C	0.0784	5E-10		0.04164062	[0.029-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr16	543495	543496	rs117290280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	16p13.3	NR	rs117290280-T	NR	6E-12		0.0454	[0.032-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
589	chr16	546044	546045	rs111528363	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	RAB11FIP3	rs111528363-C	0.979999	3E-11		0.0435864	[0.031-0.056] unit increase	NR [13737936] (imputed)	N
589	chr16	580123	580124	rs2266928	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	16p13.3	Alpha-globin cluster	rs2266928-A	NR	3E-11		0.1178	[0.083-0.152] unit decrease	Illumina [544917]	N
589	chr16	589358	589359	rs116428372	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	16p13.3	NR	rs116428372-A	0.06	2E-7		1.74	1.41-2.14	NR [8482392] (imputed)	N
589	chr16	598688	598689	rs549175319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	CAPN15, LA16c-366D1.3	rs549175319-A	9.00000000000345E-5	2E-11		1.056397	[0.75-1.37] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	598688	598689	rs549175319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	CAPN15, LA16c-366D1.3	rs549175319-A	8.60000000000305E-5	3E-21		1.69819	[1.4-2] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	598688	598689	rs549175319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	CAPN15, LA16c-366D1.3	rs549175319-A	9.00000000000345E-5	4E-13		1.13102	[0.82-1.44] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	598688	598689	rs549175319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	CAPN15, LA16c-366D1.3	rs549175319-A	8.50000000000017E-5	4E-22		1.595997	[1.27-1.92] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	602046	602047	rs572578302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	CAPN15	rs572578302-A	8.21999999999989E-4	7E-10		0.752326	[0.66-0.84] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	607130	607131	rs117543466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs117543466-?	NR	8E-16				NR [~ 8900000] (imputed)	N
589	chr16	612697	612698	rs4984890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs4984890-?	NR	4E-10				NR [~ 8900000] (imputed)	N
589	chr16	613167	613168	rs12597975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16p13.3	NR	rs12597975-?	NR	1E-8	(conditional on round 8)	0.02929612	[0.019-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
589	chr16	613343	613344	rs116903998	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFIKKN1	5,363 Icelandic ancestry individuals	NA	16p13.3		rs116903998-A	0.01963	4E-9		0.393419	[0.26-0.52] unit increase	Illumina [7506463] (imputed)	N
589	chr16	613728	613729	rs45619831	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		PRR35	rs45619831-?	NR	8E-6		1.48	[NR] unit decrease	Affymetrix [NR] (imputed)	N
589	chr16	616686	616687	rs115218263	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16p13.3	PIGQ, NHLRC4	rs115218263-T	5.0E-4	2E-9		0.8317832	[0.56-1.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr16	621611	621612	rs2105943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	PIGQ	rs2105943-A	0.203916	2E-11		0.019180467	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	622564	622565	rs12917944	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p13.3	NR	rs12917944-G	0.4208	8E-9				NR [9056863] (imputed)	N
589	chr16	622564	622565	rs12917944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	PIGQ	rs12917944-G	0.419001	2E-21		0.021755718	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	622564	622565	rs12917944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	PIGQ	rs12917944-G	0.419002	4E-24		0.023164567	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	622564	622565	rs12917944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	PIGQ	rs12917944-G	0.418964	5E-13		0.016441604	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	630664	630665	rs1981483	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	16p13.3	PIGQ	rs1981483-A	0.42	4E-6		0.11	[0.065-0.155] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
589	chr16	631751	631752	rs4580163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	PIGQ	rs4580163-A	0.422808	3E-18		0.025379492	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	632137	632138	rs4262946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.3	PIGQ	rs4262946-T	0.419425	1E-32		0.026456	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
589	chr16	632137	632138	rs4262946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.3		rs4262946-?	NR	2E-9				NR [~ 8900000] (imputed)	N
589	chr16	632232	632233	rs62030874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	PIGQ	rs62030874-C	0.41833	6E-49		0.03350765	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	633763	633764	rs8642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PIGQ	rs8642-A	NR	3E-8		0.020516	[0.013-0.028] unit increase	Affymetrix [323123] (imputed)	N
589	chr16	633763	633764	rs8642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	PIGQ	rs8642-A	0.219769	1E-10		0.022427961	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	637211	637212	rs2017567	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	16p13.3	intergenic	rs2017567-C	0.42	9E-6		0.1	[0.059-0.141] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
589	chr16	646386	646387	rs572250570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	RAB40C	rs572250570-T	4.77999999999978E-4	6E-18		0.636717	[0.5-0.77] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr16	646386	646387	rs572250570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	RAB40C	rs572250570-T	4.7699999999995E-4	9E-18		0.6250412	[0.48-0.77] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr16	658270	658271	rs11248941	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	WFIKKN1	rs11248941-G	0.7315625	2E-13	(WFIKKN1, 3191_50_2)	0.20269147	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
590	chr16	661334	661335	rs7204439	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	16p13.3	RAB40C	rs7204439-C	0.42	4E-6		0.11	[0.065-0.155] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
590	chr16	666516	666517	rs7191397	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	16p13.3	NR	rs7191397-?	NR	2E-11		0.03396	[0.024-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
590	chr16	669707	669708	rs55798945	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFIKKN1	5,363 Icelandic ancestry individuals	NA	16p13.3		rs55798945-G	0.3526	1E-26		0.204186	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
590	chr16	675679	675680	rs763014	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	16p13.3	RAB40C	rs763014-C	0.43	5E-6		0.24	[0.12-0.29] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
590	chr16	677019	677020	rs34997977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs34997977-T	0.2287	2E-12	(conditional-joint)	0.0118	[0.0085-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
590	chr16	678429	678430	rs12149200	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	16p13.3	RAB40C	rs12149200-T	0.02	4E-6		0.184	[NR] unit increase	Illumina [625127]	N
590	chr16	681965	681966	rs28455838	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	WFIKKN1	rs28455838-T	0.5897	6E-6		0.0316	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr16	691325	691325	rs762418439	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16p13.3		rs762418439-A	0.616	3E-11		0.09	[0.06-0.11] % increase	Affymetrix [NR] (imputed)	N
590	chr16	706066	706067	rs9932866	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p13.3	WDR90	rs9932866-A	0.369	3E-12		0.1098	[0.079-0.141] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
590	chr16	714176	714188	rs58553346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16p13.3		rs58553346-A	NR	7E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
590	chr16	715163	715164	rs3184470	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p13.3	NR	rs3184470-G	0.6493	1E-9		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
590	chr16	716511	716512	rs35506206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs35506206-?	NR	4E-12				NR [~ 8900000] (imputed)	N
590	chr16	717084	717085	rs7197072	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	16p13.3	WDR90	rs7197072-T		7E-9		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
590	chr16	720985	720986	rs1139897	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.3		rs1139897-G	0.78	7E-21		0.013	[0.011-0.015] unit increase	NR [NR] (imputed)	N
590	chr16	720985	720986	rs1139897	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs1139897-A	0.23	3E-18		0.0111782	[0.0087-0.0137] unit decrease	NR [9732723] (imputed)	N
590	chr16	720985	720986	rs1139897	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p13.3	NR	rs1139897-A	0.23	2E-15		0.024087192	[0.018-0.03] unit decrease	NR [~ 10000000] (imputed)	N
590	chr16	720985	720986	rs1139897	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16p13.3	NR	rs1139897-A	0.234	1E-11		0.0117362	[0.0084-0.0151] unit increase	NR [9732723] (imputed)	N
590	chr16	721455	721456	rs12933682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	RHOT2	rs12933682-C	NR	4E-8		0.0176601	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	723646	723647	rs1045716	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	WDR90, RHOT2, RHBDL1, STUB1, JMJD8	rs1045716-C	0.625398	9E-9	(194 ms)	0.0313362	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
590	chr16	723646	723647	rs1045716	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	WDR90, RHOT2, RHBDL1, STUB1, JMJD8	rs1045716-C	0.625398	5E-8	(176 ms)	0.0305014	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
590	chr16	723646	723647	rs1045716	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	WDR90, RHOT2, RHBDL1, STUB1, JMJD8	rs1045716-C	0.625398	4E-8	(192 ms)	0.0300198	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
590	chr16	723646	723647	rs1045716	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	WDR90, RHOT2, RHBDL1, STUB1, JMJD8	rs1045716-C	0.625398	2E-8	(206 ms)	0.0311399	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
590	chr16	728513	728514	rs72773411	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16p13.3	RHBDL1STUB1	rs72773411-A	0.1529	3E-8		1.0297334		Affymetrix [11880941] (imputed)	N
590	chr16	729824	729825	rs12600184	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	LA16c-313D11.9	rs12600184-G	NR	2E-8		0.0164744	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
590	chr16	729830	729831	rs12599315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	LA16c-313D11.9	rs12599315-T	NR	2E-9		0.0193706	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	729830	729831	rs12599315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	LA16c-313D11.9	rs12599315-T	NR	2E-9		0.0191499	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	731724	731725	rs6597	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein P4HB	5,354 Icelandic ancestry individuals	NA	16p13.3		rs6597-G	0.1785	5E-24		0.233821	[0.19-0.28] unit decrease	Illumina [7506463] (imputed)	N
590	chr16	735793	735794	rs11640115	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	16p13.3		rs11640115-G	0.694	3E-7		2.08	[1.47-2.88]	NR [127834]	N
590	chr16	735793	735794	rs11640115	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	WDR24	rs11640115-G	NR	3E-12		0.0259006	[0.019-0.033] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	735920	735921	rs763053	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16p13.3	WDR24	rs763053-T	0.774886	5E-11		0.0162579	[0.011-0.021] unit decrease	NR [16516521] (imputed)	N
590	chr16	735920	735921	rs763053	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	16p13.3	WDR24	rs763053-C	0.225	5E-9		0.016	[0.011-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
590	chr16	740403	740404	rs4984682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs4984682-C	0.7674	2E-16		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
590	chr16	740403	740404	rs4984682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs4984682-C	0.7674	5E-18	(MTAG)	0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
590	chr16	740465	740466	rs4984913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.3	LA16c-313D11.12	rs4984913-G	0.258221	8E-10		0.015872808	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr16	740681	740682	rs11865690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.3		rs11865690-?	NR	6E-9				NR [~ 8900000] (imputed)	N
590	chr16	746610	746611	rs11861214	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16p13.3		rs11861214-G	0.784	2E-8		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
590	chr16	746610	746611	rs11861214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16p13.3		rs11861214-?	NR	3E-11				NR [~ 8900000] (imputed)	N
590	chr16	747453	747454	rs12922098	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs12922098-T	0.7823	1E-14	(MTAG)	0.0154	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
590	chr16	749056	749057	rs4984916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	FBXL16	rs4984916-A	NR	3E-8		0.0207036	[0.013-0.028] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	749056	749057	rs4984916	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16p13.3	FBXL16	rs4984916-A	0.221	7E-13		0.017400982	[0.013-0.022] unit decrease	Affymetrix [11514654] (imputed)	N
590	chr16	754313	754314	rs4984687	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	16p13.3	FBXL16	rs4984687-T	NR	2E-7	(females)	0.168	[0.11-0.23] unit decrease	Illumina [7531543] (imputed)	N
590	chr16	757562	757563	rs13330447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	FBXL16	rs13330447-G	NR	4E-8		0.0171544	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
590	chr16	757710	757711	rs13336378	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16p13.3	NR	rs13336378-G	0.23	4E-8		0.0509261	[0.033-0.069] unit increase	Affymetrix [17914406] (imputed)	N
590	chr16	760297	760298	rs4984919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	LA16c-380A1.1	rs4984919-G	NR	6E-9		0.0210025	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
590	chr16	762617	762618	rs11865003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	LA16c-380A1.1	rs11865003-T	NR	1E-8		0.0221297	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	763370	763371	rs9745431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	METRN	rs9745431-G	NR	7E-17		0.0301472	[0.023-0.037] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	766077	766078	rs66649828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	METRN	rs66649828-G	NR	7E-11		0.0245838	[0.017-0.032] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	770885	770886	rs76064792	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.3	NR	rs76064792-?	NR	9E-6		14.724	NR unit increase	Affymetrix [at least 600000] (imputed)	N
590	chr16	773997	773998	rs73489336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	CCDC78	rs73489336-T	1.13999999999947E-4	4E-9		0.73299664	[0.49-0.98] unit increase	Affymetrix [93095623] (imputed)	N
590	chr16	777120	777121	rs1406812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	HAGHL	rs1406812-C	NR	4E-9		0.0166791	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
590	chr16	777120	777121	rs1406812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	HAGHL	rs1406812-C	NR	8E-9		0.0178692	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	777128	777129	rs1406813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	HAGHL	rs1406813-G	NR	1E-10		0.0198852	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	778023	778024	rs1406814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.3		rs1406814-C	NR	7E-45		0.0218	[0.019-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
590	chr16	778157	778158	rs1406815	33338273	Im C	2020-12-18	J Bone Miner Res	Genome-wide Association Studies Reveal Novel Locus With Sex-/Therapy-Specific Fracture Risk Effects in Childhood Cancer Survivors.	First fracture in long-term childhood cancer survivors (time to event)	1,289 European ancestry females	646 European ancestry females	16p13.3	HAGHL	rs1406815-G	0.2	8E-9		1.43	[1.27-1.62]	Illumina [~ 5400000] (imputed)	N
590	chr16	779295	779296	rs199866266	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	HAGHL	rs199866266-?	NR	9E-8		0.10725985	[0.068-0.147] unit decrease	Illumina [27896057] (imputed)	N
590	chr16	781291	781292	rs13338700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	HAGHL, NARFL	rs13338700-T	NR	7E-15		0.0300218	[0.022-0.038] unit increase	Affymetrix [321114] (imputed)	N
590	chr16	782644	782645	rs759045171	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	HAGHL, NARFL	rs759045171-CT	0.1953	4E-6		0.0398	[0.023-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr16	783155	783156	rs61112891	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	NARFL	rs61112891-?	NR	1E-7		0.018522725	[0.012-0.025] unit increase	Illumina [27896057] (imputed)	N
590	chr16	783863	783864	rs12051048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	HAGHL, NARFL	rs12051048-A	NR	3E-12		0.0234261	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
590	chr16	783864	783865	rs12051245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	HAGHL, NARFL	rs12051245-C	NR	8E-21		0.0340884	[0.027-0.041] unit increase	Affymetrix [323123] (imputed)	N
590	chr16	783864	783865	rs12051245	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	CIAO3	rs12051245-T	0.7682	3E-40		0.0299	[0.026-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
590	chr16	783864	783865	rs12051245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs12051245-?	NR	3E-77				NR [~ 8900000] (imputed)	N
591	chr16	792037	792038	rs4984922	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs4984922-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
591	chr16	792189	792190	rs11648796	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	16p13.3	NARFL	rs11648796-A	0.17	6E-8		0.043	[0.025-0.061] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
591	chr16	792189	792190	rs11648796	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.3	NARFL	rs11648796-A	0.74	1E-13		0.034	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
591	chr16	796975	796976	rs142686179	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	intergenic	rs142686179-A	9.0E-4	1E-10		0.6205361	[0.43-0.81] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr16	810142	810143	rs3764246	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	16p13.3	MSLN	rs3764246-G	0.236	3E-15		0.15	[0.18-0.11] unit decrease	Illumina [NR] (imputed)	N
591	chr16	810592	810593	rs2235503	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MSLN plasma levels	400 French ancestry individuals	NA	16p13.3		rs2235503-C	NR	9E-18		0.335	[0.26-0.41] nM increase	Illumina [5201092] (imputed)	N
591	chr16	811432	811433	rs2235505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs2235505-?	NR	3E-8				NR [~ 8900000] (imputed)	N
591	chr16	814057	814058	rs9927389	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	16p13.3	MSLN	rs9927389-T	0.015	3E-13		0.46	[0.58-0.34] unit decrease	Illumina [NR] (imputed)	N
591	chr16	818451	818452	rs150425699	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	16p13.3	MSLN	rs150425699-A	0.004	4E-9		0.74	[0.98-0.50] unit decrease	Illumina [NR] (imputed)	N
591	chr16	820887	820888	rs12599339	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	16p13.3		rs12599339-T	0.75	7E-25		0.1681	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
591	chr16	828079	828080	rs114590746	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	16p13.3		rs114590746-T	0.012	5E-48		1.0386	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
591	chr16	839667	839668	rs199955523	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	16p13.3		rs199955523-?	NR	7E-9		1.35988	[0.88-1.84] unit decrease	NR [9800000] (imputed)	N
591	chr16	839837	839838	rs2277899	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p13.3	CHTF18	rs2277899-C	0.1669	3E-13		0.0345859	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr16	840408	840409	rs3765264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.3	CHTF18	rs3765264-C	0.178796	3E-22		0.028289266	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr16	841310	841311	rs200880754	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	16p13.3		rs200880754-?	NR	2E-8		0.386463	[0.25-0.52] unit increase	NR [9800000] (imputed)	N
591	chr16	842705	842706	rs742320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	CHTF18	rs742320-A	0.196268	7E-21		0.0278036	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr16	842705	842706	rs742320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p13.3	CHTF18	rs742320-A	0.1969	5E-14		0.03339093	[0.025-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr16	847596	847597	rs2294450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs2294450-?	NR	1E-22				NR [~ 8900000] (imputed)	N
591	chr16	849165	849166	rs2272900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	CHTF18, GNG13	rs2272900-A	0.234505	6E-20		0.024354994	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr16	849165	849166	rs2272900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	CHTF18, GNG13	rs2272900-A	0.234418	3E-14		0.01963894	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr16	867298	867299	rs79237026	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	16p13.3	PRR25	rs79237026-A	NR	2E-6		0.258	[0.15-0.36] unit increase	Illumina [NR] (imputed)	N
591	chr16	867936	867937	rs613275	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.3	GNG13	rs613275-?	NR	5E-6	(salicylurate)	2.073613	[1.18-2.97] unit decrease	Affymetrix [at least 2500000] (imputed)	N
591	chr16	892148	892149	rs150762228	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs150762228-A	0.01394	3E-9	(ALDH16A1)	0.02648	NR unit increase	Illumina [1671387] (imputed)	N
592	chr16	921178	921179	rs143076454	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs143076454-A	NR	2E-15		0.0712	[0.054-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
592	chr16	921178	921179	rs143076454	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.3	LMF1	rs143076454-G	0.981353	4E-8		0.0403694	[0.026-0.055] unit decrease	Affymetrix [NR] (imputed)	N
592	chr16	921178	921179	rs143076454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs143076454-?	NR	1E-12				NR [~ 8900000] (imputed)	N
592	chr16	939636	939637	rs56274719	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	16p13.3	LMF1	rs56274719-C	0.77894	9E-6		0.340054	[0.19-0.49] unit increase	Illumina [6952813] (imputed)	N
592	chr16	939636	939637	rs56274719	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	16p13.3	LA16c-306A4.1	rs56274719-C	0.77894	6E-6		0.350577	[0.2-0.5] unit increase	Illumina [6952813] (imputed)	N
592	chr16	957645	957646	rs7206374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.3		rs7206374-G	0.918167	3E-9		0.0437938	[0.029-0.058] unit decrease	NR [11722792] (imputed)	N
592	chr16	957645	957646	rs7206374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.3		rs7206374-G	0.918167	2E-8		0.0412775	[0.027-0.056] unit decrease	NR [11722792] (imputed)	N
592	chr16	960724	960725	rs742036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p13.3		rs742036-A	NR	2E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
592	chr16	962153	962154	rs12600110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.3	LMF1	rs12600110-T	0.623619	9E-13		0.0146778	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
592	chr16	962153	962154	rs12600110	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16p13.3	LMF1	rs12600110-?	NR	2E-8		0.0153	[0.011-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
592	chr16	965516	965517	rs146615088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.3		rs146615088-C	0.917687	2E-10		0.0482375	[0.033-0.063] unit increase	NR [11722792] (imputed)	N
592	chr16	967240	967241	rs12918782	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p13.3	NR	rs12918782-G	0.2568	5E-11		0.0308	[0.022-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
592	chr16	968291	968292	rs4984980	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p13.3	NR	rs4984980-G	0.8117	4E-9		0.0351	[0.023-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
592	chr16	977159	977160	rs8056644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	16p13.3		rs8056644-T	0.665465	4E-8		0.0235219	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
592	chr16	977159	977160	rs8056644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	16p13.3		rs8056644-T	0.665465	4E-8		0.0236132	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
592	chr16	979553	979554	rs575596509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	LMF1, LA16c-366D3.1	rs575596509-A	6.89999999999857E-5	3E-15		1.68579	[1.33-2.04] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr16	979553	979554	rs575596509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	LMF1, LA16c-366D3.1	rs575596509-A	6.89999999999857E-5	1E-15		1.5462852	[1.17-1.93] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr16	980073	980074	rs12719813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	LMF1, LA16c-366D3.1	rs12719813-G	NR	4E-9		0.0176938	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
592	chr16	992728	992729	rs7199601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.3	Intergenic	rs7199601-A	0.7012	6E-13		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
592	chr16	992728	992729	rs7199601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16p13.3	Intergenic	rs7199601-A	0.7017	4E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
592	chr16	1000793	1000794	rs73483874	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	LMF1	rs73483874-T	0.6888	1E-14		0.0172	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
592	chr16	1004553	1004554	rs3751667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.3	Intergenic	rs3751667-T	0.2294	1E-13	(MTAG)	0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr16	1004553	1004554	rs3751667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs3751667-T	0.2289	5E-16	(MTAG)	0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr16	1004553	1004554	rs3751667	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs3751667-T	0.2289	2E-12	(MTAG)	0.011	[0.0079-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr16	1004553	1004554	rs3751667	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	NR	rs3751667-?	NR	7E-8		5.396	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr16	1004553	1004554	rs3751667	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	16p13.3	RHBDF1	rs3751667-T	NR	3E-6	(males)	1.26	[1.14-1.38]	Affymetrix, Illumina [NR] (imputed)	N
592	chr16	1004553	1004554	rs3751667	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	16p13.3	RHBDF1	rs3751667-T	NR	3E-6	(males)	1.18	[1.10-1.26]	Affymetrix, Illumina [NR] (imputed)	N
592	chr16	1004553	1004554	rs3751667	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	16p13.3	LMF1	rs3751667-T	0.208	3E-9		1.18	1.12-1.25	Illumina [at least 6769856] (imputed)	N
592	chr16	1004553	1004554	rs3751667	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	16p13.3	LMF1	rs3751667-T	0.208	9E-10		1.14	1.09-1.19	Illumina [at least 6887412] (imputed)	N
592	chr16	1004553	1004554	rs3751667	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	16p13.3	LMF1	rs3751667-T	0.208	6E-6		1.13	1.07-1.19	Illumina [at least 6790270] (imputed)	N
592	chr16	1012392	1012393	rs7404696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs7404696-?	NR	8E-9				NR [~ 8900000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	9E-9	(232 ms)	0.0417435	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	8E-9	(240 ms)	0.0425867	[0.028-0.058] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	7E-9	(230 ms)	0.0419348	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	4E-8	(222 ms)	0.0398508	[0.025-0.055] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	3E-8	(236 ms)	0.0409552	[0.026-0.056] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	3E-8	(228 ms)	0.0401961	[0.025-0.055] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	2E-8	(234 ms)	0.0412883	[0.026-0.056] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	1E-8	(244 ms)	0.0418294	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	1E-8	(242 ms)	0.0421935	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016056	1016057	rs6600238	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	LMF1	rs6600238-C	0.840769	1E-8	(238 ms)	0.0422595	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
592	chr16	1016474	1016475	rs72769435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	16p13.3		rs72769435-C	0.889801	2E-8		0.0360745	[0.023-0.049] unit increase	NR [11722792] (imputed)	N
592	chr16	1016474	1016475	rs72769435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16p13.3		rs72769435-C	0.889801	3E-8		0.0365981	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
592	chr16	1017981	1017982	rs72769438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	16p13.3		rs72769438-T	0.88984	4E-8		0.0353009	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
592	chr16	1017981	1017982	rs72769438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	16p13.3		rs72769438-T	0.88984	1E-8		0.0368979	[0.024-0.05] unit increase	NR [11722792] (imputed)	N
592	chr16	1017981	1017982	rs72769438	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	16p13.3		rs72769438-T	0.88984	2E-9		0.0387329	[0.026-0.051] unit increase	NR [11722792] (imputed)	N
592	chr16	1018696	1018697	rs34316274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs34316274-A	0.762	4E-9		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
592	chr16	1018696	1018697	rs34316274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.3	Intergenic	rs34316274-A	0.7596	5E-10	(MTAG)	0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
592	chr16	1027098	1027099	rs3803700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs3803700-?	NR	3E-28				NR [~ 8900000] (imputed)	N
592	chr16	1041459	1041460	rs237679	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs237679-A	0.03659	2E-8	(HNRNPH3)	0.04658	NR unit increase	Illumina [1671387] (imputed)	N
593	chr16	1050876	1050877	rs500492	25574032	Lee H	2015-01-08	Hum Reprod	Genome-wide association study identified new susceptibility loci for polycystic ovary syndrome.	Polycystic ovary syndrome	976 Korean ancestry cases, 946 Korean ancestry controls	249 Korean ancestry cases, 778 Korean ancestry controls	16p13.3	SOX8, LMF1, SSTR5	rs500492-A	0.65	6E-6		1.32	[NR]	Illumina [636870]	N
593	chr16	1053855	1053856	rs140454225	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	16p13.3	LMF1, SOX8, SSTR5, C1QTNF8	rs140454225-C	0.01	3E-7		1.43	[0.88-1.98] unit increase	Illumina [7797526] (imputed)	N
593	chr16	1067831	1067832	rs405343	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16p13.3	SOX8	rs405343-T	NR	3E-15		1.101079	NR	Affymetrix, Illumina [8278136] (imputed)	N
593	chr16	1067894	1067895	rs413165	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	16p13.3		rs413165-T	0.822945	2E-8		0.0494502	[0.032-0.067] increase	Affymetrix [NR]	N
593	chr16	1073148	1073149	rs2573149	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p13.3	SOX8	rs2573149-A	0.169011323711516	8E-7	(G_unclassified_F_Erysipelotrichaceae_HB)	0.360885	[0.22-0.5] unit increase	Illumina [7711310] (imputed)	N
593	chr16	1073551	1073552	rs2744148	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16p13.3	SOX8	rs2744148-G	NR	8E-8		1.12	[1.1-1.14]	Illumina [465434]	N
593	chr16	1076659	1076660	rs439731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	16p13.3	Intergenic	rs439731-T	NR	6E-6		0.0184372	[0.01-0.026] unit increase	Illumina [13519193] (imputed)	N
593	chr16	1076659	1076660	rs439731	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	16p13.3	Intergenic	rs439731-T	NR	3E-6		0.0173923	[0.01-0.025] unit increase	Illumina [13520550] (imputed)	N
593	chr16	1106794	1106795	rs213667	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	16p13.3	NR	rs213667-?	NR	2E-6		0.34337574	[0.22-0.53]	Affymetrix, Illumina [~ 10400000] (imputed)	N
593	chr16	1110580	1110581	rs76819935	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	SSTR5-AS1	rs76819935-T	0.952889	2E-10		0.0261061	[0.018-0.034] unit decrease	NR [13737936] (imputed)	N
593	chr16	1115043	1115044	rs1561024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs1561024-C	NR	2E-10		0.0485	[0.034-0.063] unit increase	Affymetrix [9000000] (imputed)	N
593	chr16	1116212	1116213	rs596501	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	SSTR5-AS1	rs596501-?	NR	2E-9		0.019842952	[0.013-0.026] unit decrease	Illumina [27896057] (imputed)	N
593	chr16	1116702	1116703	rs118125269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs118125269-T	NR	1E-76		0.1085	[0.097-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr16	1121225	1121226	rs548411	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	SSTR5-AS1	rs548411-T	0.2455	6E-17		0.018	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
593	chr16	1129009	1129010	rs4988483	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs4988483-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
593	chr16	1129009	1129010	rs4988483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs4988483-?	NR	7E-16				NR [~ 8900000] (imputed)	N
593	chr16	1129009	1129010	rs4988483	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs4988483-?	NR	2E-17		0.0389041	[0.03-0.048] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr16	1129585	1129586	rs121917877	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs121917877-?	NR	3E-23		0.29136	[0.23-0.35] unit increase	NR [9800000] (imputed)	N
593	chr16	1129585	1129586	rs121917877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs121917877-T	NR	1E-13		0.343	[0.25-0.43] unit increase	Affymetrix [9000000] (imputed)	N
593	chr16	1131392	1131393	rs2076421	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs2076421-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
593	chr16	1131694	1131695	rs197056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs197056-G	NR	1E-39		0.0324	[0.028-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr16	1216374	1216375	rs117598596	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	16p13.3		rs117598596-?	NR	6E-6		1.65916	[1.44-1.88]	NR [663102]	N
594	chr16	1246747	1246748	rs9933256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.3		rs9933256-?	NR	2E-10				NR [~ 8900000] (imputed)	N
594	chr16	1246747	1246748	rs9933256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs9933256-A	0.5729	2E-21	(MTAG)	0.0159	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
594	chr16	1246747	1246748	rs9933256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs9933256-A	0.5558	6E-17		0.0119	[0.0092-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
594	chr16	1247570	1247571	rs3794620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.3	Intergenic	rs3794620-T	0.5433	1E-10	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
594	chr16	1247605	1247606	rs3794621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.3	Intergenic	rs3794621-A	0.4263	8E-14	(MTAG)	0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
594	chr16	1249876	1249877	rs11640926	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	16p13.3	CACNA1H	rs11640926-G	0.139	3E-6		0.0557	[0.032-0.079] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
594	chr16	1250558	1250559	rs8044363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.3	Intergenic	rs8044363-T	0.5744	8E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
594	chr16	1252368	1252369	rs61734410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs61734410-T	0.278	6E-21	(MTAG)	0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
594	chr16	1252440	1252441	rs4984636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p13.3	NR	rs4984636-C	0.320889	4E-11		0.014093	[0.0099-0.0183] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
594	chr16	1253528	1253529	rs2050114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16p13.3	Intergenic	rs2050114-T	0.5113	6E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
594	chr16	1255040	1255041	rs56412134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p13.3		rs56412134-G	NR	2E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
594	chr16	1255831	1255832	rs35482321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.3	CACNA1H	rs35482321-T	0.33662	5E-11		0.015619202	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
594	chr16	1255831	1255832	rs35482321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.3		rs35482321-?	NR	2E-13				NR [~ 8900000] (imputed)	N
594	chr16	1255884	1255885	rs8049080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs8049080-?	NR	5E-11				NR [~ 8900000] (imputed)	N
594	chr16	1262309	1262310	rs111255867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs111255867-A	0.05649	2E-142		0.989076	[0.91-1.07] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1262854	1262855	rs4984769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2	5,367 Icelandic ancestry individuals	NA	16p13.3		rs4984769-T	0.2068	1E-37		0.296487	[0.25-0.34] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1262854	1262855	rs4984769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2	5,366 Icelandic ancestry individuals	NA	16p13.3		rs4984769-T	0.2068	9E-18		0.19758	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1264301	1264302	rs10438679	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs10438679-T	0.792	2E-12	(Tryptase beta-2, TPSB2.3403.1.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr16	1268375	1268376	rs58124832	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	16p13.3	CACNA1H	rs58124832-A	NR	9E-6		1.4442		Illumina [592007] (imputed)	N
594	chr16	1268541	1268542	rs60526088	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16p13.3	NR	rs60526088-?	NR	2E-9				Illumina [7760689] (imputed)	N
594	chr16	1272864	1272865	rs4984639	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs4984639-G	0.2977	2E-77		0.369248	[0.33-0.41] unit decrease	Illumina [7506463] (imputed)	N
594	chr16	1273443	1273444	rs61587627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs61587627-T	0.03156	6E-114		1.19686	[1.09-1.3] unit decrease	Illumina [7506463] (imputed)	N
594	chr16	1273886	1273887	rs116860921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2	5,367 Icelandic ancestry individuals	NA	16p13.3		rs116860921-T	0.04243	1E-6		0.23184	[0.14-0.32] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1279267	1279268	rs190865136	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs190865136-C	0.295	6E-250	(Tryptase beta-2, TPSB2.3403.1.2)	0.94	[0.88-1] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr16	1279815	1279816	rs371907673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs371907673-A	0.31	2E-313	(Tryptase beta-2, TPSB2.3403.1.2)	1.0	[0.94-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr16	1280086	1280087	rs143547788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urticaria	1,057 European ancestry cases, 482,892 European ancestry controls, 9,893 East Asian ancestry cases, 162,190 East Asian ancestry controls	NA	16p13.3		rs143547788-C	NR	1E-8		0.1373	[0.09-0.184] unit increase	Affymetrix, Illumina [25844326] (imputed)	N
594	chr16	1288562	1288563	rs112332886	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2	5,367 Icelandic ancestry individuals	NA	16p13.3		rs112332886-A	0.08301	5E-162		0.889874	[0.83-0.95] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1291596	1291597	rs144979264	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	TPSAB1	rs144979264-G	0.449	2E-819	(Tryptase beta-2, TPSB2.3403.1.2)	1.06	[1.02-1.1] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr16	1294623	1294624	rs2092389	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	TPSAB1	rs2092389-T	0.2081	1E-15		0.019	[0.014-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
594	chr16	1295124	1295125	rs35262813	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA2922 sp900313925 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.3		rs35262813-T	0.0754143	5E-8		0.0674489	[0.043-0.092] unit increase	Illumina [7980478] (imputed)	N
594	chr16	1297070	1297071	rs9937881	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs9937881-T	0.2088	2E-130		0.525323	[0.48-0.57] unit increase	Illumina [7506463] (imputed)	N
594	chr16	1297070	1297071	rs9937881	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	16p13.3	NR	rs9937881-T	0.2089	3E-8		2.286	[1.99-2.59]	Illumina [281811]	N
594	chr16	1297515	1297516	rs4984778	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16p13.3	TPSD1, TPSG1, TPSB2, TPSAB1, RP11-616M22.5, CACNA1H, RP11-616M22.12, PRSS29P	rs4984778-C	0.2846386	3E-27	(Tryptase beta-2)	0.5167	[0.43-0.61] unit increase	Affymetrix [509946]	N
594	chr16	1299382	1299384	rs200104800	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs200104800-C	0.252	2E-283	(Tryptase beta-2, TPSB2.3403.1.2)	1.0	[0.94-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
594	chr16	1301841	1301842	rs536152521	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NR	rs536152521-G	0.109	3E-167	(Tryptase beta-2, TPSB2.3403.1.2)	1.02	[0.94-1.1] unit increase	Affymetrix [10572788] (imputed)	N
594	chr16	1306641	1306642	rs61739908	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	TPSAB1	rs61739908-C	0.80796875	2E-76	(TPSAB1, 9409_11_3)	0.54740816	[0.49-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
595	chr16	1324458	1324459	rs10903002	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	TPSB2	rs10903002-C	0.49796875	9E-114	(TPSB2, 14696_45_3)	0.5286272	[0.48-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
595	chr16	1324458	1324459	rs10903002	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	TPSB2	rs10903002-C	0.49796875	1E-162	(TPSB2, 3403_1_2)	0.63284135	[0.59-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
595	chr16	1327391	1327392	rs11862795	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	16p13.3	TPSD1, UBE2I	rs11862795-C	0.038	3E-6		1.84	[1.36-2.49]	Affymetrix [up to 27494467] (imputed)	N
595	chr16	1327435	1327436	rs113612401	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs113612401-A	0.0244	2E-202		1.72109	[1.61-1.83] unit increase	Illumina [7506463] (imputed)	N
595	chr16	1341296	1341297	rs7500182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	TPSP2	rs7500182-A	NR	3E-8		0.0167801	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
595	chr16	1341296	1341297	rs7500182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	TPSP2	rs7500182-A	NR	4E-9		0.0179007	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
595	chr16	1342840	1342841	rs9674436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	RP11-616M22.7	rs9674436-A	NR	4E-8		0.015828	[0.01-0.021] unit increase	Affymetrix [321169] (imputed)	N
595	chr16	1344290	1344291	rs11248862	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p13.3	UBE2I	rs11248862-A	0.1237	5E-15		0.2088	[0.16-0.26] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
595	chr16	1347716	1347717	rs11641374	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.3	UBE2I	rs11641374-A	0.5815	1E-14		0.1556	[0.12-0.19] mmHg decrease	Affymetrix [NR] (imputed)	N
595	chr16	1347861	1347862	rs11647740	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	RP11-616M22.7	rs11647740-T	NR	4E-9		0.0170293	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
595	chr16	1347861	1347862	rs11647740	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	RP11-616M22.7	rs11647740-T	NR	1E-9		0.0175257	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
595	chr16	1349208	1349209	rs7187167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p13.3	RP11-616M22.7	rs7187167-C	0.712791	1E-14		0.018915446	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1351026	1351027	rs28625102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	RP11-616M22.7	rs28625102-A	NR	9E-10		0.0195139	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
595	chr16	1351026	1351027	rs28625102	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	RP11-616M22.7	rs28625102-A	NR	3E-10		0.0200975	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
595	chr16	1358034	1358035	rs566752820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.3	UBE2I	rs566752820-G	0.266664	4E-11		0.016665667	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1362186	1362187	rs12920764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs12920764-T	0.633161	5E-16				Affymetrix, Illumina [23114412] (imputed)	N
595	chr16	1364766	1364767	rs2281226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs2281226-?	NR	2E-11				NR [~ 8900000] (imputed)	N
595	chr16	1365340	1365341	rs11248866	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.3	UBE2I	rs11248866-A	0.5811	5E-10		0.1726	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
595	chr16	1366424	1366425	rs2369842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16p13.3		rs2369842-T	NR	2E-13		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
595	chr16	1366424	1366425	rs2369842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16p13.3		rs2369842-T	NR	2E-13		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
595	chr16	1366424	1366425	rs2369842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p13.3	UBE2I	rs2369842-T	0.272054	1E-14		0.01920105	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
595	chr16	1366424	1366425	rs2369842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2369842-T	0.247619	8E-16				Affymetrix, Illumina [24649327] (imputed)	N
595	chr16	1366424	1366425	rs2369842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p13.3	NR	rs2369842-T	0.271878	3E-18		0.018996	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
595	chr16	1366424	1366425	rs2369842	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p13.3	NR	rs2369842-T	0.271954	4E-18		0.01958	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
595	chr16	1366424	1366425	rs2369842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.3		rs2369842-?	NR	1E-15				NR [~ 8900000] (imputed)	N
595	chr16	1369072	1369073	rs8046527	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	UBE2I	rs8046527-C	0.131	6E-10		0.0172	[0.012-0.023] unit increase	Affymetrix [18391927] (imputed)	N
595	chr16	1376509	1376510	rs710902	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16p13.3	AXIN1, MRPL28, TMEM8A, TPSD1, UBE2I, BAIAP3, UNKL, CCDC154, CLCN7	rs710902-?		6E-18				Affymetrix, Illumina [NR] (imputed)	N
595	chr16	1386727	1386728	rs4984815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.3	BAIAP3	rs4984815-C	0.891579	2E-10		0.023189139	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1386727	1386728	rs4984815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	BAIAP3	rs4984815-C	0.891578	1E-9		0.022047821	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1386727	1386728	rs4984815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	BAIAP3	rs4984815-C	0.89163	3E-11		0.023977604	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1386727	1386728	rs4984815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	BAIAP3	rs4984815-C	0.891626	2E-10		0.02302549	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr16	1407808	1407809	rs4984820	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	GNPTG	rs4984820-C	0.92296875	8E-14	(GNPTG, 10666_7_3)	0.34434813	[0.25-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
595	chr16	1420340	1420341	rs138288642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs138288642-?	NR	8E-11				NR [~ 8900000] (imputed)	N
595	chr16	1428235	1428236	rs117868506	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	16p13.3	UNKL	rs117868506-T	0.013	7E-13	(YKL-40)	50.578	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
595	chr16	1433765	1433766	rs12918814	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNPTG	5,339 Icelandic ancestry individuals	NA	16p13.3		rs12918814-T	0.07859	2E-22		0.294062	[0.24-0.35] unit increase	Illumina [7506463] (imputed)	N
596	chr16	1484454	1484455	rs61743495	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p13.3	NR	rs61743495-?	NR	3E-6	(Native Hawaiian)	0.9229	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
596	chr16	1492859	1492860	rs113953823	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	16p13.3		rs113953823-T	0.01883	1E-115		1.52502	[1.39-1.66] unit increase	Illumina [7506463] (imputed)	N
596	chr16	1525709	1525710	rs67412457	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	16p13.3	CLCN7	rs67412457-A	NR	1E-6		1.25	[1.14-1.36]	Illumina [7436415] (imputed)	N
596	chr16	1532462	1532463	rs13336428	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	PTX4	rs13336428-G	0.59014	1E-12		0.0133925	[0.0097-0.0171] unit increase	NR [13737936] (imputed)	N
596	chr16	1532462	1532463	rs13336428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs13336428-?	NR	1E-11				NR [~ 8900000] (imputed)	N
596	chr16	1532462	1532463	rs13336428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs13336428-?	NR	2E-8				NR [~ 8900000] (imputed)	N
596	chr16	1532462	1532463	rs13336428	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.3	C16orf38	rs13336428-A	0.43	1E-16		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
596	chr16	1532864	1532865	rs13336594	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16p13.3	NR	rs13336594-A	0.0498532	5E-6		1.067	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
596	chr16	1533219	1533220	rs34435227	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs34435227-?	NR	7E-13		0.0133394	[0.0092-0.0175] unit increase	Affymetrix [20259828] (imputed)	N
596	chr16	1541460	1541461	rs2745106	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	16p13.3	PTX4, TELO2	rs2745106-G	0.904	2E-8				NR [509413]	N
596	chr16	1569404	1569405	rs2667666	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs2667666-C	NR	6E-15		0.0343	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
597	chr16	1579150	1579151	rs3784828	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	16p13.3		rs3784828-?	NR	4E-6		0.883382	[0.83-0.94]	NR [680312]	N
597	chr16	1579150	1579151	rs3784828	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	TMEM204	rs3784828-T	0.1274	2E-12		0.0192	[0.014-0.024] unit increase	Affymetrix [18391927] (imputed)	N
597	chr16	1584617	1584618	rs2076438	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16p13.3	IFT140, TMEM204	rs2076438-?	NR	3E-8		0.0280613	[0.018-0.038] unit increase	Illumina [4804024] (imputed)	N
597	chr16	1584865	1584866	rs2235642	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16p13.3	IFT140, TMEM204	rs2235642-T	0.633	8E-6		0.027	[0.015-0.039] unit decrease	Affymetrix [7947838] (imputed)	N
597	chr16	1585891	1585892	rs117903220	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs117903220-C	NR	1E-10		0.0631	[0.044-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
597	chr16	1594375	1594376	rs140189706	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	16p13.3		rs140189706-T	NR	3E-6		0.57	[0.45-0.72]	Illumina [7582931] (imputed)	N
597	chr16	1595599	1595600	rs56342298	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	16p13.3	NR	rs56342298-C	0.950684	8E-6		0.132	[0.075-0.189] unit decrease	NR [9260588] (imputed)	N
597	chr16	1650945	1650946	rs2667684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2667684-G	0.523611	9E-16				Affymetrix, Illumina [20825802] (imputed)	N
597	chr16	1650945	1650946	rs2667684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs2667684-A	0.135705	4E-13		0.185851	[0.14-0.24] SD units increase	Affymetrix, Illumina [36043646] (imputed)	N
597	chr16	1676803	1676804	rs118159104	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	16p13.3	RPL3L	rs118159104-G	0.014	2E-8		1.2	[1.13-1.28]	Illumina [34740186] (imputed)	N
597	chr16	1695896	1695896	rs34888975	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Snoring	105,377 European ancestry cases and controls	NA	16p13.3	NR	rs34888975-TA	0.078	5E-8		0.044	[0.028-0.060] unit increase	Affymetrix [at least 12428592] (imputed)	N
598	chr16	1705793	1705794	rs79007183	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	16p13.3	CRAMP1L, TMEM204, IFT140, HN1L	rs79007183-A	0.01	3E-10		14.0	[NR]	Affymetrix [4893794] (imputed)	N
598	chr16	1717794	1717795	rs117631661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs117631661-T	NR	2E-12		0.0708	[0.051-0.091] unit increase	Affymetrix [9000000] (imputed)	N
598	chr16	1718109	1718110	rs61746451	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs61746451-T	NR	3E-9		0.0726	[0.048-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
598	chr16	1740690	1740691	rs9933881	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	16p13.3	NR	rs9933881-C	0.0743	9E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [10862568] (imputed)	N
598	chr16	1756177	1756178	rs6600164	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16p13.3	MAPK8IP3	rs6600164-T	0.83	5E-8		0.0991	[0.062-0.136] unit increase	Affymetrix [~ 11900000] (imputed)	N
598	chr16	1769705	1769706	rs985183711	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	16p13.3		rs985183711-G	0.01304	7E-7		3.246	[2.04-5.165]	Affymetrix [7975321] (imputed)	N
598	chr16	1795600	1795601	rs11648261	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p13.3	NR	rs11648261-A	0.805013	6E-9		0.0144915	[0.0096-0.0194] unit decrease	NR [NR]	N
598	chr16	1803892	1803893	rs117959643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs117959643-A	NR	9E-23		0.0795	[0.064-0.095] unit increase	Affymetrix [9000000] (imputed)	N
598	chr16	1814439	1814440	rs2294619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs2294619-G	NR	9E-36		0.038	[0.032-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
598	chr16	1815945	1815946	rs2575371	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p13.3		rs2575371-C	0.45	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
598	chr16	1828029	1828030	rs35816944	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16p13.3		rs35816944-?	NR	1E-18		0.0830275	[0.063-0.103] unit decrease	NR [9800000] (imputed)	N
598	chr16	1828029	1828030	rs35816944	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	16p13.3		rs35816944-?	NR	2E-10		0.0833559	[0.059-0.108] unit increase	NR [9800000] (imputed)	N
598	chr16	1828029	1828030	rs35816944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs35816944-A	NR	3E-12		0.1043	[0.075-0.134] unit decrease	Affymetrix [9000000] (imputed)	N
598	chr16	1828029	1828030	rs35816944	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	SPSB3	rs35816944-A	0.0066	2E-23		0.1097	[0.088-0.131] unit decrease	Affymetrix [18391927] (imputed)	N
598	chr16	1828029	1828030	rs35816944	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	16p13.3	SPSB3	rs35816944-A	0.007	4E-11		0.1	[0.071-0.129] unit decrease	Affymetrix [18391927] (imputed)	N
598	chr16	1828029	1828030	rs35816944	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	16p13.3	SPSB3	rs35816944-A	0.007	5E-14		0.12	[0.089-0.151] unit decrease	Affymetrix [18391927] (imputed)	N
598	chr16	1828029	1828030	rs35816944	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16p13.3	SPSB3	rs35816944-G	0.99	1E-9		2.7	[1.84-3.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
598	chr16	1828029	1828030	rs35816944	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16p13.3	SPSB3	rs35816944-G	0.9917	3E-9		2.7029	[1.81-3.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
598	chr16	1828029	1828030	rs35816944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs35816944-?	NR	1E-15				NR [~ 8900000] (imputed)	N
598	chr16	1831911	1831912	rs1178437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.3	SPSB3	rs1178437-C	0.697966	2E-9		0.014756917	[0.0099-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr16	1833507	1833508	rs72761177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs72761177-A	NR	2E-74		0.0749	[0.067-0.083] unit increase	Affymetrix [9000000] (imputed)	N
599	chr16	1837405	1837406	rs2235649	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p13.3	NUBP2	rs2235649-T	0.22	2E-11	(X-12556)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
599	chr16	1838835	1838836	rs1065656	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	16p13.3	NUBP2, IGFALS	rs1065656-G	0.68	1E-11	(IGFBP-3)			Affymetrix, Illumina [~ 2500000] (imputed)	N
599	chr16	1839133	1839134	rs1065666	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	IGFALS	rs1065666-C	0.84171875	4E-6	(IGFALS, 6605_17_3)	0.15279377	[0.088-0.218] unit increase	Illumina [> 1000000] (imputed)	N
599	chr16	1840635	1840636	rs776312123	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs776312123-?	NR	4E-12		0.926887	[0.67-1.19] unit decrease	NR [9800000] (imputed)	N
599	chr16	1840710	1840711	rs143070371	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs143070371-?	NR	2E-24		0.214646	[0.17-0.26] unit decrease	NR [9800000] (imputed)	N
599	chr16	1840740	1840741	rs200313587	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs200313587-?	NR	4E-12		0.780414	[0.56-1.01] unit decrease	NR [9800000] (imputed)	N
599	chr16	1840935	1840935	rs1055208203	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs1055208203-?	NR	5E-9		1.0102	[0.66-1.36] unit decrease	NR [9800000] (imputed)	N
599	chr16	1841324	1841325	rs773502836	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs773502836-?	NR	4E-33		0.714687	[0.6-0.83] unit decrease	NR [9800000] (imputed)	N
599	chr16	1841520	1841521	rs1172812314	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs1172812314-?	NR	1E-8		0.841303	[0.55-1.13] unit decrease	NR [9800000] (imputed)	N
599	chr16	1841531	1841532	rs372343863	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs372343863-?	NR	4E-9		0.765273	[0.51-1.02] unit decrease	NR [9800000] (imputed)	N
599	chr16	1841688	1841689	rs774634302	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs774634302-?	NR	1E-11		0.667656	[0.48-0.86] unit decrease	NR [9800000] (imputed)	N
599	chr16	1841904	1841905	rs781481672	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs781481672-?	NR	2E-17		1.03767	[0.79-1.28] unit decrease	NR [9800000] (imputed)	N
599	chr16	1842068	1842069	rs571481044	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs571481044-?	NR	7E-9		0.749927	[0.5-1] unit decrease	NR [9800000] (imputed)	N
599	chr16	1842108	1842109	rs745487269	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	16p13.3		rs745487269-?	NR	4E-18		0.884399	[0.68-1.09] unit decrease	NR [9800000] (imputed)	N
599	chr16	1842453	1842454	rs34680334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs34680334-A	NR	4E-14		0.1479	[0.11-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
599	chr16	1842972	1842973	rs28469124	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.3	NR	rs28469124-C	0.08726500000000004	7E-13		0.010397	[0.0075-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
599	chr16	1842972	1842973	rs28469124	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.3	NR	rs28469124-C	0.08726500000000004	2E-9		0.0101531	[0.0069-0.0134] unit increase	Affymetrix [16582965] (imputed)	N
599	chr16	1844225	1844226	rs2745205	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16p13.3	NR	rs2745205-G	0.6981	4E-8		0.001306	[0.00082-0.00179] unit decrease	Affymetrix [NR] (imputed)	N
599	chr16	1844780	1844781	rs2256923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	IGFALS	rs2256923-G	0.70141	1E-9		0.0146103995	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
599	chr16	1877697	1877698	rs3743852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs3743852-G	NR	7E-25		0.0355	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
599	chr16	1882220	1882221	rs61656020	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	16p13.3	NR	rs61656020-?	NR	2E-6		1.3092432		Affymetrix [8183964] (imputed)	N
599	chr16	1883278	1883279	rs238677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16p13.3		rs238677-C	NR	2E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
599	chr16	1890372	1890373	rs62038423	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs62038423-C	NR	7E-19		0.0291	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
599	chr16	1912615	1912616	rs28460464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs28460464-?	NR	4E-10				NR [~ 8900000] (imputed)	N
599	chr16	1915582	1915583	rs391543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p13.3	NR	rs391543-G	0.714698	6E-11		0.013629	[0.0096-0.0177] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
599	chr16	1921196	1921197	rs12719796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p13.3		rs12719796-G	NR	7E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
599	chr16	1961865	1961866	rs61742747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs61742747-A	NR	1E-24		0.0717	[0.058-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
600	chr16	1973515	1973516	rs344364	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	16p13.3	HS3ST6, MSRB1	rs344364-A	0.22	5E-6		0.08	[0.041-0.119] unit increase	Illumina [~ 8300000] (imputed)	N
600	chr16	1974430	1974431	rs118002512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs118002512-G	NR	1E-36		0.0777	[0.066-0.09] unit increase	Affymetrix [9000000] (imputed)	N
600	chr16	1994775	1994776	rs57827007	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	16p13.3	NR	rs57827007-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
600	chr16	1997003	1997004	rs113956264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16p13.3		rs113956264-T	NR	3E-18		0.0421	[0.033-0.052] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
600	chr16	1997003	1997004	rs113956264	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16p13.3	RPL3L	rs113956264-T	0.0358	2E-16		0.0081	[0.0057-0.0105] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
600	chr16	1997384	1997385	rs79075024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs79075024-G	NR	8E-16		0.0604	[0.046-0.075] unit increase	Affymetrix [9000000] (imputed)	N
600	chr16	2003015	2003016	rs140185678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	16p13.3		rs140185678-A	NR	4E-13		0.1928	[0.14-0.24] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
600	chr16	2003015	2003016	rs140185678	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	16p13.3	RPL3L	rs140185678-A	0.035	2E-14		1.18	[1.13-1.23]	Illumina [34740186] (imputed)	N
600	chr16	2003015	2003016	rs140185678	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	16p13.3	RPL3L	rs140185678-A	0.04	6E-14	(EA)	1.2		Affymetrix, Illumina [up to 12149979] (imputed)	N
600	chr16	2003424	2003425	rs438339	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16p13.3	RPL3L	rs438339-T	0.8818	1E-12		0.0035	[0.0023-0.0047] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
600	chr16	2005981	2005982	rs30252	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	16p13.3	RPL3L	rs30252-T	0.69	4E-14	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
600	chr16	2007269	2007270	rs12924536	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	RPL3L, NDUFB10, RPS2, RNF151	rs12924536-C	0.272197	2E-8	(-34 ms)	0.0370588	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
600	chr16	2014282	2014283	rs2286466	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	16p13.3	RPS2	rs2286466-G	0.81	4E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
600	chr16	2033940	2033941	rs4305019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.3		rs4305019-?	NR	1E-13				NR [~ 8900000] (imputed)	N
600	chr16	2034012	2034012	rs201048650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.3	NOXO1	rs201048650-GCCCGGCCCCGC	0.18619	2E-10		0.018161476	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
600	chr16	2036047	2036048	rs1046495	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p13.3	NR	rs1046495-T	0.810557	3E-11		0.016825	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
600	chr16	2068570	2068571	rs112724384	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPW	5,367 Icelandic ancestry individuals	NA	16p13.3		rs112724384-A	0.171	7E-115		0.51881	[0.47-0.56] unit decrease	Illumina [7506463] (imputed)	N
600	chr16	2068740	2068741	rs112050738	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	NPW	rs112050738-C	0.8334375	1E-74	(NPW, 9986_14_3)	0.5737465	[0.51-0.63] unit increase	Illumina [> 1000000] (imputed)	N
600	chr16	2076201	2076202	rs35327014	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NPW	rs35327014-G	0.231	2E-49	(Neuropeptide W, NPW.9986.14.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	2E-14		0.1044	[0.078-0.131] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	3E-9		0.0731	[0.049-0.097] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	2E-16		0.113	[0.086-0.14] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	6E-11		0.0744	[0.052-0.097] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	9E-9		0.0673	[0.044-0.09] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16p13.3		rs139491786-T	NR	4E-12		0.0998	[0.072-0.128] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	2E-25		0.131096	[0.11-0.16] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	4E-14		0.0950681	[0.071-0.119] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	6E-18		0.100237	[0.077-0.123] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	2E-14		0.0933263	[0.069-0.117] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	4E-18		0.103761	[0.08-0.128] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	1E-22		0.124939	[0.1-0.15] unit decrease	NR [9800000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs139491786-T	0.00686399999999998	2E-11		0.09079624	[0.064-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs139491786-T	0.00684099999999999	5E-15		0.104680635	[0.078-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs139491786-T	0.00686600000000004	5E-10		0.08388037	[0.057-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs139491786-T	0.00684600000000002	5E-19		0.11958545	[0.093-0.146] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs139491786-T	0.00684399999999996	6E-14		0.100727834	[0.074-0.127] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993482	1E-18				Affymetrix, Illumina [24332387] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993295	1E-19		0.10798	[0.085-0.131] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993323	1E-10		0.076235	[0.053-0.1] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993511	4E-21				Affymetrix, Illumina [24653286] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993332	3E-23		0.118571	[0.095-0.142] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993503	3E-15				Affymetrix, Illumina [24558453] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16p13.3	NR	rs139491786-C	0.993323	5E-17		0.10036	[0.077-0.124] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
600	chr16	2086420	2086421	rs139491786	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16p13.3	SLC9A3R2	rs139491786-T		2E-12		0.102	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	5E-26				NR [~ 8900000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	1E-16				NR [~ 8900000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p13.3		rs139491786-?	NR	1E-9				NR [~ 8900000] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	SLC9A3R2	rs139491786-T	0.0063	1E-30		1.985	[1.65-2.32] mmHg decrease	Affymetrix [NR] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	SLC9A3R2	rs139491786-T	0.0063	5E-10		0.7815	[0.53-1.03] mmHg decrease	Affymetrix [NR] (imputed)	N
600	chr16	2086420	2086421	rs139491786	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	SLC9A3R2	rs139491786-T	0.0063	1E-29		1.222	[1.01-1.43] mmHg decrease	Affymetrix [NR] (imputed)	N
600	chr16	2086420	2086421	rs139491786	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p13.3	SLC9A3R2	rs139491786-C		3E-7		1.685	unit increase	Affymetrix [at least 2696785] (imputed)	N
600	chr16	2086420	2086421	rs139491786	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p13.3	SLC9A3R2	rs139491786-C		1E-9		1.155	unit increase	Affymetrix [at least 2696785] (imputed)	N
600	chr16	2087459	2087460	rs12447809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs12447809-T	0.191166	6E-15		0.02263258	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2089005	2089006	rs3211995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.3		rs3211995-A	NR	4E-8		0.0176	[0.011-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
600	chr16	2089005	2089006	rs3211995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	SLC9A3R2	rs3211995-A	0.159477	2E-9		0.01815931	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr16	2095064	2095065	rs2516726	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.3	NTHL1	rs2516726-T	0.772109	2E-9		0.00990951	[0.0067-0.0131] unit increase	Affymetrix [12370749]	N
601	chr16	2097157	2097158	rs2516739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs2516739-?	NR	2E-11				NR [~ 8900000] (imputed)	N
601	chr16	2097157	2097158	rs2516739	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	16p13.3	NTHL1	rs2516739-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
601	chr16	2107112	2107113	rs45502703	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	TSC2	rs45502703-G	0.052	5E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
601	chr16	2119186	2119187	rs8050755	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	16p13.3	TSC2	rs8050755-T	NR	9E-6		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
601	chr16	2121000	2121001	rs13334473	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs13334473-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
601	chr16	2125833	2125834	rs13337626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p13.3	NR	rs13337626-C	NR	2E-20		0.0397	[0.031-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr16	2125936	2125937	rs1800715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p13.3	TSC2	rs1800715-G	0.084248	7E-12		0.027352763	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr16	2125936	2125937	rs1800715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs1800715-?	NR	1E-12				NR [~ 8900000] (imputed)	N
601	chr16	2131288	2131289	rs9926128	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs9926128-T	NR	5E-15		0.51	[0.37-0.65] unit decrease	Illumina [97506867]	N
601	chr16	2131288	2131289	rs9926128	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs9926128-T	NR	9E-11		0.07	[0.05-0.09] unit decrease	Illumina [101200590]	N
601	chr16	2131288	2131289	rs9926128	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs9926128-T	NR	6E-20		0.24	[0.18-0.3] unit decrease	Illumina [94681438]	N
601	chr16	2144175	2144176	rs34197769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs34197769-A	0.0795522	4E-14				Affymetrix, Illumina [23467995] (imputed)	N
601	chr16	2144298	2144299	rs34123233	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	PKD1	rs34123233-T	0.822132	2E-20		0.0224831	[0.018-0.027] unit decrease	NR [13737936] (imputed)	N
601	chr16	2144298	2144299	rs34123233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs34123233-?	NR	7E-25				NR [~ 8900000] (imputed)	N
601	chr16	2144298	2144299	rs34123233	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs34123233-?	NR	2E-22		0.0257364	[0.02-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
601	chr16	2144893	2144894	rs12929950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p13.3	RP11-304L19.1, RP11-304L19.3	rs12929950-A	0.077134	4E-13		0.030051082	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr16	2144893	2144894	rs12929950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs12929950-A	0.0745693	4E-15				Affymetrix, Illumina [24649327] (imputed)	N
601	chr16	2144893	2144894	rs12929950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p13.3	NR	rs12929950-A	0.077395	8E-17		0.030161	[0.023-0.037] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
601	chr16	2144893	2144894	rs12929950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16p13.3	NR	rs12929950-A	0.077004	3E-15		0.028783	[0.022-0.036] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
601	chr16	2145786	2145787	rs7185040	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	16p13.3	PKD1	rs7185040-C	0.18	3E-8		0.0642	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
601	chr16	2146287	2146288	rs74002781	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	16p13.3	PKD1	rs74002781-T	NR	7E-6	(males)	0.21	[0.11-0.31] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
601	chr16	2150322	2150323	rs11248911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16p13.3		rs11248911-G	NR	2E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
601	chr16	2151063	2151064	rs36103164	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs36103164-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
601	chr16	2152650	2152651	rs9928278	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	16p13.3		rs9928278-?	NR	3E-11				NR [9705931] (imputed)	N
601	chr16	2152650	2152651	rs9928278	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	16p13.3	PKD1	rs9928278-C	0.1828	6E-7		1.4526653	1.28-1.65	Illumina [6530233] (imputed)	N
601	chr16	2154536	2154537	rs147350387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16p13.3		rs147350387-A	NR	2E-8		0.0516	[0.034-0.07] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
601	chr16	2154536	2154537	rs147350387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16p13.3		rs147350387-A	NR	2E-28		0.0972	[0.08-0.114] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
601	chr16	2154536	2154537	rs147350387	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16p13.3	MIR6511B1	rs147350387-G	0.982106	1E-33		0.0238274	[0.02-0.028] unit increase	Affymetrix [13995440] (imputed)	N
601	chr16	2155296	2155297	rs9934488	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p13.3		rs9934488-G	0.16	1E-48		14.65	z score increase	Affymetrix [9061022] (imputed)	N
601	chr16	2155818	2155819	rs28610092	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p13.3		rs28610092-C	0.17	4E-12		6.94	z score increase	Affymetrix [9061022] (imputed)	N
601	chr16	2155818	2155819	rs28610092	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16p13.3	NR	rs28610092-C	0.1696	4E-13				NR [9056863] (imputed)	N
601	chr16	2155818	2155819	rs28610092	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	PKD1	rs28610092-A	0.8258	1E-6		0.044	[0.026-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr16	2157078	2157079	rs3874658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16p13.3		rs3874658-C	NR	2E-8		0.0188	[0.012-0.025] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
601	chr16	2158418	2158419	rs139971481	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	16p13.3		rs139971481-?	NR	3E-19		0.13806	[0.11-0.17] unit decrease	NR [9800000] (imputed)	N
601	chr16	2158569	2158570	rs140869992	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.3	PKD1	rs140869992-A	0.0142	1E-13		1.472	[1.08-1.86] mmHg decrease	Affymetrix [NR] (imputed)	N
601	chr16	2160502	2160503	rs71385734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	PKD1	rs71385734-G	NR	3E-12		0.026725	[0.019-0.034] unit decrease	Affymetrix [321114] (imputed)	N
601	chr16	2160502	2160503	rs71385734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	PKD1	rs71385734-G	NR	3E-15		0.0326902	[0.025-0.041] unit decrease	Affymetrix [321114] (imputed)	N
601	chr16	2160502	2160503	rs71385734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.3		rs71385734-?	NR	1E-9				NR [~ 8900000] (imputed)	N
601	chr16	2160972	2160973	rs116092985	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	PKD1	rs116092985-A	0.9042	1E-34		0.0401	[0.034-0.047] unit increase	Affymetrix [18391927] (imputed)	N
601	chr16	2160972	2160973	rs116092985	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	16p13.3	PKD1	rs116092985-A	0.904	3E-20		0.04	[0.032-0.048] unit increase	Affymetrix [18391927] (imputed)	N
601	chr16	2160972	2160973	rs116092985	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	16p13.3	PKD1	rs116092985-A	0.904	9E-17		0.04	[0.03-0.05] unit increase	Affymetrix [18391927] (imputed)	N
601	chr16	2160972	2160973	rs116092985	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	16p13.3	PKD1	rs116092985-A	0.909	7E-11		0.606	[0.42-0.79] unit increase	Affymetrix [NR] (imputed)	N
601	chr16	2160972	2160973	rs116092985	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16p13.3	PKD1	rs116092985-A	0.095	1E-8		0.003	[0.0016-0.0044] unit decrease	Affymetrix [NR] (imputed)	N
601	chr16	2162360	2162361	rs2549677	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16p13.3		rs2549677-G	0.09	1E-18		8.82	z score increase	Affymetrix [9061022] (imputed)	N
601	chr16	2162360	2162361	rs2549677	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p13.3	NR	rs2549677-G	0.0978	1E-17				NR [9056863] (imputed)	N
601	chr16	2162360	2162361	rs2549677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	PKD1, RP11-304L19.4	rs2549677-G	NR	5E-8		0.0285393	[0.018-0.039] unit decrease	Affymetrix [321114] (imputed)	N
601	chr16	2165629	2165630	rs35929659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs35929659-C	0.185112	9E-12				Affymetrix, Illumina [23114412] (imputed)	N
601	chr16	2165629	2165630	rs35929659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.3		rs35929659-?	NR	2E-10				NR [~ 8900000] (imputed)	N
601	chr16	2169457	2169458	rs4018180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16p13.3		rs4018180-A	NR	8E-11		0.0314	[0.022-0.041] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
601	chr16	2169457	2169458	rs4018180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	PKD1, RP11-304L19.2	rs4018180-A	NR	2E-8		0.0319404	[0.021-0.043] unit decrease	Affymetrix [321114] (imputed)	N
601	chr16	2169457	2169458	rs4018180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.3	PKD1, RP11-304L19.2	rs4018180-A	0.067581	7E-10		0.027599871	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr16	2169457	2169458	rs4018180	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p13.3	NR	rs4018180-G	0.932322	8E-14		0.0298279	[0.022-0.038] unit increase	NR [NR]	N
601	chr16	2170527	2170528	rs13330552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs13330552-?	NR	6E-31				Affymetrix [~ 8270000] (imputed)	N
601	chr16	2170527	2170528	rs13330552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs13330552-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
601	chr16	2171051	2171052	rs147829960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs147829960-?	NR	6E-16				NR [~ 8900000] (imputed)	N
601	chr16	2175322	2175323	rs13337177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p13.3	NR	rs13337177-T	0.17963	1E-13		0.01952	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
601	chr16	2175322	2175323	rs13337177	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p13.3	NR	rs13337177-T	0.1785	2E-12		0.022823771	[0.016-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
601	chr16	2175372	2175373	rs13333747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p13.3	PKD1	rs13333747-C	0.182068	2E-10		0.018431239	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr16	2175372	2175373	rs13333747	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p13.3	NA	rs13333747-T	0.8169	1E-12		0.018	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
601	chr16	2175875	2175876	rs72766653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p13.3	NR	rs72766653-T	NR	1E-14		0.0302	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
601	chr16	2178424	2178425	rs116353685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.3		rs116353685-C	NR	2E-25		0.0282	[0.023-0.033] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
601	chr16	2195555	2195556	rs36227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16p13.3	NR	rs36227-C	NR	1E-10		0.02	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
601	chr16	2196486	2196486	rs3072253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	RAB26	rs3072253-A	NR	4E-8		0.0220271	[0.014-0.03] unit decrease	Affymetrix [323123] (imputed)	N
601	chr16	2199787	2199788	rs36232	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	16p13.3	NR	rs36232-G	0.82	3E-10		0.015	[0.01-0.02] unit increase	Affymetrix [2446094] (imputed)	N
601	chr16	2199787	2199788	rs36232	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	16p13.3	NR	rs36232-G	0.82	5E-8				Affymetrix [2446094] (imputed)	N
601	chr16	2201269	2201270	rs36234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs36234-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
601	chr16	2208888	2208889	rs2078282	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	TRAF7	rs2078282-A	0.2712	2E-9		0.0498	[0.034-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr16	2210451	2210452	rs9926191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p13.3		rs9926191-G	NR	1E-26		0.0494	[0.04-0.058] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
601	chr16	2210451	2210452	rs9926191	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16p13.3	TRAF7	rs9926191-A	0.929155	1E-34		0.00548558	[0.0046-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
601	chr16	2222285	2222286	rs11547311	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	TRAF7	rs11547311-T	0.0701	7E-7		0.0696	[0.042-0.097] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr16	2225672	2225673	rs150545244	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	TRAF7	rs150545244-A	0.0077	4E-18		1.54	[1.19-1.89] mmHg decrease	Affymetrix [NR] (imputed)	N
601	chr16	2225672	2225673	rs150545244	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	TRAF7	rs150545244-A	0.0077	3E-7		0.6577	[0.41-0.91] mmHg decrease	Affymetrix [NR] (imputed)	N
601	chr16	2225672	2225673	rs150545244	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16p13.3	TRAF7	rs150545244-A	0.0077	9E-15		0.845	[0.63-1.06] mmHg decrease	Affymetrix [NR] (imputed)	N
602	chr16	2237548	2237549	rs26835	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	CASKIN1	rs26835-T	NR	1E-9		0.0190761	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
602	chr16	2238930	2238931	rs11860560	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs11860560-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
602	chr16	2249375	2249376	rs26868	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.3	CASKIN1	rs26868-A	0.46	9E-17		0.034	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
602	chr16	2250232	2250233	rs9928327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p13.3	NR	rs9928327-T	NR	8E-13		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr16	2255806	2255807	rs112805476	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	BRICD5	rs112805476-A	0.2622	2E-27		0.0246	[0.02-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
602	chr16	2255806	2255807	rs112805476	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16p13.3	NR	rs112805476-A	0.262512	7E-9		0.0455686	[0.03-0.062] unit decrease	Affymetrix [17914406] (imputed)	N
602	chr16	2259190	2259191	rs3160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	MLST8	rs3160-T	0.5386	7E-7		0.0327	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr16	2262986	2262987	rs62038850	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	PGP	rs62038850-A	0.0231	7E-6		0.1046	[0.059-0.15] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr16	2263835	2263836	rs116977380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p13.3	NR	rs116977380-T	NR	1E-12		0.0439	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr16	2263835	2263836	rs116977380	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.3	NR	rs116977380-T	NR	8E-10		0.0379	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
602	chr16	2265070	2265071	rs25849	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	PGP	rs25849-G	NR	2E-12		0.0221467	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
602	chr16	2265070	2265071	rs25849	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PGP	rs25849-G	NR	2E-11		0.022757	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
602	chr16	2265070	2265071	rs25849	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	PGP	rs25849-?	NR	7E-15		0.022721672	[0.017-0.028] unit increase	Illumina [27896057] (imputed)	N
602	chr16	2265070	2265071	rs25849	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	PGP	rs25849-C	0.7038	2E-7		0.0376	[0.023-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr16	2265270	2265271	rs77316573	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	16p13.3	RPL3L	rs77316573-T	0.199	2E-8		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
602	chr16	2267876	2267877	rs27345	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.3	PGP	rs27345-A	0.2906	3E-6		0.0341	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr16	2268736	2268737	rs39875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	PGP	rs39875-G	NR	2E-8		0.0184333	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
602	chr16	2268736	2268737	rs39875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	PGP	rs39875-G	NR	4E-13		0.0236059	[0.017-0.03] unit increase	Affymetrix [321016] (imputed)	N
602	chr16	2268736	2268737	rs39875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PGP	rs39875-G	NR	4E-12		0.0244836	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
602	chr16	2274662	2274663	rs74367875	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	E4F1	rs74367875-T	0.035	1E-17		0.0456	[0.035-0.056] unit increase	Affymetrix [18391927] (imputed)	N
602	chr16	2287865	2287866	rs761890431	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	16p13.3		rs761890431-?	NR	1E-9		0.659915	[0.41-0.91] unit decrease	NR [9800000] (imputed)	N
602	chr16	2287865	2287866	rs761890431	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	16p13.3		rs761890431-?	NR	7E-11		0.755851	[0.51-1] unit decrease	NR [9800000] (imputed)	N
602	chr16	2291349	2291350	rs27648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs27648-?	NR	8E-63				NR [~ 8900000] (imputed)	N
602	chr16	2294889	2294890	rs26845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs26845-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
602	chr16	2295074	2295075	rs4018440	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16p13.3	ECI1	rs4018440-C	0.94	2E-9		6.03	z-score increase	Affymetrix [4311822] (imputed)	N
602	chr16	2296196	2296197	rs77407216	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	16p13.3	ECI1, AC009065.8	rs77407216-?		1E-11				Illumina [9499600] (imputed)	N
602	chr16	2323259	2323260	rs151080253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	MIR940	rs151080253-A	NR	1E-8		0.0450129	[0.03-0.061] unit increase	Affymetrix [323123] (imputed)	N
602	chr16	2332576	2332577	rs2238464	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16p13.3	ABCA3	rs2238464-T	0.320557	3E-8		0.015373	[0.0099-0.0208] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
602	chr16	2334162	2334163	rs45452892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs45452892-?	NR	4E-8				NR [~ 8900000] (imputed)	N
602	chr16	2350958	2350959	rs375231277	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16p13.3	ABCA3	rs375231277-T	0.0083	8E-7		0.453	[0.27-0.63] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr16	2365287	2365288	rs11867129	28039329	Noordam R	2016-12-30	J Med Genet	A genome-wide interaction analysis of tricyclic/tetracyclic antidepressants and RR and QT intervals: a pharmacogenomics study from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	RR interval (tricyclic/tetracyclic antidepressant use interaction)	1,417 European ancestry users, 295 African American users, 174 Hispanic or Latino ancestry users, 44,289  European ancestry non-users, 9,940 African American non-users, 13,634 Hispanic or Latino ancestry non-users	NA	16p13.3	ABCA3	rs11867129-T	0.09	3E-7	(EA)	35.7	[22.18-49.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
603	chr16	2367763	2367764	rs149989682	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FEV1/FVC)	371,898 European ancestry individuals	NA	16p13.3		rs149989682-?	NR	6E-18		0.11729	[0.091-0.144] unit decrease	NR [9800000] (imputed)	N
603	chr16	2445362	2445363	rs6600202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16p13.3	NR	rs6600202-G	NR	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
603	chr16	2450569	2450570	rs200841050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p13.3		rs200841050-T	NR	1E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
603	chr16	2450569	2450570	rs200841050	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.3	CCNF	rs200841050-C	0.32555	2E-10		0.0135897	[0.0094-0.0178] unit increase	Affymetrix [NR] (imputed)	N
603	chr16	2453564	2453565	rs8054113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs8054113-?	NR	3E-27				NR [~ 8900000] (imputed)	N
603	chr16	2458852	2458853	rs144763902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16p13.3		rs144763902-?	NR	3E-14				NR [~ 8900000] (imputed)	N
604	chr16	2494474	2494475	rs11647929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.3		rs11647929-?	NR	8E-9				NR [~ 8900000] (imputed)	N
604	chr16	2495288	2495289	rs78671515	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	16p13.3	NR	rs78671515-?	NR	9E-6		0.5703	[0.32-0.82]	Illumina [NR] (imputed)	N
604	chr16	2506022	2506023	rs12922325	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	CCNF	rs12922325-A	0.3264	2E-6		0.0336	[0.02-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr16	2512522	2512523	rs3810794	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	C16orf59	rs3810794-A	0.2902	1E-6		0.0359	[0.021-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
604	chr16	2547033	2547034	rs72768728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p13.3	NR	rs72768728-G	NR	4E-9		0.0627	[0.042-0.084] unit increase	Affymetrix [9000000] (imputed)	N
604	chr16	2547068	2547069	rs761934676	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	16p13.3	TBC1D24	rs761934676-G	0.01	6E-13	(additive)	6.59	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
604	chr16	2547068	2547069	rs761934676	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	16p13.3	TBC1D24	rs761934676-G	0.01	6E-13	(additive)	6.59	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
604	chr16	2552533	2552534	rs4786286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	TBC1D24	rs4786286-T	0.021366	1E-9		0.047307234	[0.032-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr16	2592624	2592625	rs375968703	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	16p13.3	NR	rs375968703-G	0.24	8E-8		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
605	chr16	2637282	2637283	rs7201584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PDPK1	rs7201584-C	NR	5E-8		0.0223225	[0.014-0.03] unit increase	Affymetrix [323123] (imputed)	N
605	chr16	2658384	2658385	rs189794920	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16p13.3	Intergenic	rs189794920-A	NR	6E-7	(between families)	4.999	unit decrease	Affymetrix [up to 15107142] (imputed)	N
605	chr16	2708557	2708558	rs7199358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16p13.3		rs7199358-A	NR	6E-10		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
605	chr16	2714442	2714443	rs112367696	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	16p13.3	ERVK13-1	rs112367696-C	0.02	2E-18		8.74	NR z score increase	Illumina [at least 900015] (imputed)	N
606	chr16	2758282	2758283	rs77844870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs77844870-?	NR	3E-16				NR [~ 8900000] (imputed)	N
606	chr16	2787061	2787062	rs181179291	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs181179291-A	0.9895	5E-12		0.0658	[0.047-0.084] unit decrease	NR [~ 27400000] (imputed)	N
606	chr16	2797160	2797161	rs117549504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs117549504-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
606	chr16	2797160	2797161	rs117549504	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs117549504-?	NR	4E-12				NR [~ 8900000] (imputed)	N
606	chr16	2803955	2803956	rs3112681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p13.3		rs3112681-T	0.590672	2E-13		0.0154453	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
606	chr16	2803955	2803956	rs3112681	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	SRRM2	rs3112681-?	NR	7E-16		0.023886636	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
606	chr16	2816626	2816627	rs117133016	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	16p13.3		rs117133016-?	NR	3E-11		0.06	[0.07-0.04] unit increase	Illumina [NR]	N
606	chr16	2816626	2816627	rs117133016	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	16p13.3	SRRM2	rs117133016-?	0.011	9E-6				Illumina [308166]	N
606	chr16	2825815	2825816	rs3094772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs3094772-?	NR	2E-11				NR [~ 8900000] (imputed)	N
606	chr16	2828172	2828173	rs2335455	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16p13.3	TCEB2	rs2335455-C	0.7367	5E-12		0.02845915	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr16	2830481	2830482	rs4280242	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p13.3		rs4280242-C	0.244	6E-15				Affymetrix [10369434] (imputed)	N
606	chr16	2830481	2830482	rs4280242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p13.3	NR	rs4280242-T	0.754112	1E-45		0.032913	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
606	chr16	2834825	2834826	rs12931183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p13.3		rs12931183-G	NR	1E-25		0.0203	[0.017-0.024] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
606	chr16	2835188	2835189	rs12599918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16p13.3	PRSS33	rs12599918-A	0.752	9E-11		0.02706289	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
606	chr16	2835188	2835189	rs12599918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16p13.3	PRSS33	rs12599918-A	0.7521	7E-15		0.03235626	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr16	2835188	2835189	rs12599918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16p13.3	PRSS33	rs12599918-A	0.752	8E-14		0.03117419	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr16	2836026	2836027	rs7195287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p13.3	PRSS33	rs7195287-G	0.7548	3E-15		0.0329167	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
606	chr16	2838273	2838274	rs4785903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.3	PRSS33	rs4785903-C	0.754625	2E-41		0.034676332	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr16	2838273	2838274	rs4785903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.3	PRSS33	rs4785903-C	0.754659	2E-40		0.03429681	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr16	2838273	2838274	rs4785903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs4785903-C	0.669809	1E-42				Affymetrix, Illumina [19872809] (imputed)	N
606	chr16	2838273	2838274	rs4785903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.3		rs4785903-?	NR	5E-37				NR [~ 8900000] (imputed)	N
606	chr16	2880613	2880614	rs2190809	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZG16B	5,353 Icelandic ancestry individuals	NA	16p13.3		rs2190809-T	0.2748	2E-13		0.145073	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
606	chr16	2880613	2880614	rs2190809	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	ZG16B	rs2190809-C	0.72515625	1E-8	(ZG16B, 8310_6_3)	0.15556356	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
607	chr16	2891417	2891418	rs12596044	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS22	5,364 Icelandic ancestry individuals	NA	16p13.3		rs12596044-G	0.2731	2E-35		0.242429	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
607	chr16	2892369	2892370	rs3810801	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	PRSS22	rs3810801-A	0.333	4E-33	(Brain-specific serine protease 4, PRSS22.4534.10.2)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
607	chr16	2910735	2910736	rs7204669	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	PRSS22	rs7204669-G	0.70015625	4E-24	(PRSS22, 4534_10_2)	0.25930867	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr16	2917326	2917327	rs9925432	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.3	NR	rs9925432-?	NR	4E-7		0.1098	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
607	chr16	2978067	2978068	rs138436123	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p13.3	FLYWCH1	rs138436123-C	0.999	1E-6	(AA)	2.387	NR unit increase	Illumina [NR] (imputed)	N
607	chr16	3011513	3011514	rs986358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16p13.3		rs986358-?	NR	2E-10				NR [~ 8900000] (imputed)	N
607	chr16	3011513	3011514	rs986358	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.3	NR	rs986358-C	0.370355	2E-12		0.0226919	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
608	chr16	3020132	3020133	rs182204471	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	16p13.3	NR	rs182204471-C		6E-6		0.5143	[0.29-0.74] SD units increase	NR [10700000] (imputed)	N
608	chr16	3023604	3023605	rs886427	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16p13.3	PKMYT1	rs886427-?	0.28	6E-6	(WHR)			Illumina [308011]	N
608	chr16	3077866	3077867	rs1052458	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p13.3		rs1052458-G	0.44	7E-9		5.78	z score increase	Affymetrix [9061022] (imputed)	N
608	chr16	3114471	3114472	rs9788910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16p13.3		rs9788910-G	NR	2E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
608	chr16	3114471	3114472	rs9788910	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16p13.3	IL32	rs9788910-C	0.473624	2E-13		0.0028759	[0.0021-0.0036] unit decrease	Affymetrix [13995440] (imputed)	N
608	chr16	3115110	3115111	rs28372698	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.3	NR	rs28372698-A	0.40588100000000005	6E-9		0.00470202	[0.003-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
608	chr16	3115324	3115325	rs76580947	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	16p13.3	IL32	rs76580947-?	NR	3E-12		0.003	[0.002-0.004] unit decrease	Affymetrix [21347608] (imputed)	N
608	chr16	3115324	3115325	rs76580947	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	16p13.3	IL32	rs76580947-?	NR	3E-12		0.0053	[0.0037-0.0069] unit decrease	Affymetrix [21347608] (imputed)	N
608	chr16	3118864	3118865	rs12934561	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16p13.3	Intergenic	rs12934561-?		8E-6		1.2987013	[1.15-1.45]	Illumina [7645193] (imputed)	N
608	chr16	3124919	3124920	rs4349147	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	16p13.3	IL32	rs4349147-?	NR	8E-6				Illumina [990115]	N
608	chr16	3133653	3133654	rs11639564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs11639564-?	NR	2E-13				NR [~ 8900000] (imputed)	N
609	chr16	3147673	3147674	rs2717685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs2717685-C	0.933182	2E-10		0.172798	[0.12-0.23] SD units decrease	Affymetrix, Illumina [36043646] (imputed)	N
609	chr16	3181995	3181996	rs11649450	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	16p13.3	NR	rs11649450-?	NR	4E-7			[NR]	Illumina [5432814] (imputed)	N
609	chr16	3185736	3185737	rs560947	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	16p13.3	ZNF213	rs560947-C		9E-6		0.04	[0.02-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr16	3203292	3203293	rs224187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.3		rs224187-?	NR	2E-8				NR [~ 8900000] (imputed)	N
609	chr16	3243921	3243922	rs437867	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Lachnospiraceae UCG 010 id.11330)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16p13.3		rs437867-A	NR	3E-8		5.5226035	z score increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr16	3245099	3245100	rs13333637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	16p13.3	NR	rs13333637-G	0.978937	9E-12		0.356681	[0.25-0.46] SD units increase	Affymetrix, Illumina [26810224] (imputed)	N
609	chr16	3245099	3245100	rs13333637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs13333637-G	0.996531	7E-11				Affymetrix, Illumina [24246363] (imputed)	N
610	chr16	3293406	3293407	rs61752717	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	16p13.3	MEFV	rs61752717-C	NR	2E-12		4.76	[2.94-7.68]	Illumina [up to 294091]	N
610	chr16	3300974	3300975	rs8052280	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs8052280-G	NR	9E-13		0.45	[0.33-0.57] unit decrease	Illumina [97506867]	N
610	chr16	3300974	3300975	rs8052280	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs8052280-G	NR	4E-12		0.07	[0.05-0.09] unit decrease	Illumina [101200590]	N
610	chr16	3300974	3300975	rs8052280	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs8052280-G	NR	2E-20		0.23	[0.19-0.27] unit decrease	Illumina [94681438]	N
610	chr16	3310882	3310883	rs178618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.3		rs178618-?	NR	2E-8				NR [~ 8900000] (imputed)	N
610	chr16	3330178	3330179	rs458522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.3		rs458522-?	NR	2E-9				NR [~ 8900000] (imputed)	N
610	chr16	3364996	3364997	rs12325187	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs12325187-G	0.273	1E-7		0.00653467	[0.0041-0.0089] unit increase	NR [9732723] (imputed)	N
610	chr16	3364996	3364997	rs12325187	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	ZNF75A	rs12325187-C	0.738996	4E-9		0.0124687	[0.0083-0.0166] unit decrease	NR [13737936] (imputed)	N
610	chr16	3366512	3366513	rs17136317	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.3		rs17136317-T	0.762	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
610	chr16	3398898	3398904	rs138117677	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	16p13.3	ZNF75A, OR2C1	rs138117677-?	NR	2E-7	(AA and Sub-Saharan African)			NR [at least 880000]	N
611	chr16	3450906	3450907	rs1878931	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	16p13.3	NLRC3	rs1878931-G	0.39	6E-6	(AA)	0.034	[-0.1228-0.1908] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
611	chr16	3500514	3500515	rs28810	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	16p13.3	NAA60	rs28810-A	0.12	6E-7	(correcting APOE e4)	0.0577	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
611	chr16	3500514	3500515	rs28810	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	16p13.3	NAA60	rs28810-A	0.11	5E-7		0.0624	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
611	chr16	3509055	3509056	rs40363	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	16p13.3	NAA60	rs40363-G	0.72	3E-6		11.1111	[NR]	Affymetrix [up to 4467279] (imputed)	N
611	chr16	3521070	3521071	rs9922570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.3	LA16c-306E5.3, NAA60	rs9922570-C	0.047029	3E-11		0.03486924	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
611	chr16	3521070	3521071	rs9922570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.3	LA16c-306E5.3, NAA60	rs9922570-C	0.0470350000000001	1E-10		0.03367872	[0.023-0.044] unit increase	Affymetrix [93095623] (imputed)	N
611	chr16	3521070	3521071	rs9922570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p13.3	NR	rs9922570-C	0.046941	7E-11		0.03067	[0.021-0.04] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
611	chr16	3521070	3521071	rs9922570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.3		rs9922570-?	NR	6E-9				NR [~ 8900000] (imputed)	N
611	chr16	3536998	3536999	rs11077343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs11077343-?	NR	4E-11				NR [~ 8900000] (imputed)	N
611	chr16	3538872	3538873	rs2379829	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	16p13.3	LA16c-306E5.3	rs2379829-G	0.26959999999999995	5E-15		0.2678	[0.2-0.33] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
612	chr16	3539317	3539318	rs28526575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs28526575-C	0.0941283	7E-10				Affymetrix, Illumina [19872809] (imputed)	N
612	chr16	3539906	3539907	rs34565121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16p13.3		rs34565121-A	NR	5E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
612	chr16	3539906	3539907	rs34565121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p13.3		rs34565121-A	NR	2E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
612	chr16	3540961	3540962	rs9926609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16p13.3		rs9926609-?	NR	2E-8				NR [~ 8900000] (imputed)	N
612	chr16	3544039	3544040	rs56793723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.3	NR	rs56793723-T	NR	2E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
612	chr16	3554544	3554545	rs72778130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p13.3	NR	rs72778130-A	NR	3E-11		0.02	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr16	3554544	3554545	rs72778130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p13.3	NR	rs72778130-A	NR	8E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
612	chr16	3554544	3554545	rs72778130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p13.3	NR	rs72778130-A	NR	1E-11		0.0203	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
612	chr16	3562074	3562075	rs8046072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs8046072-A	0.8017	9E-9		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
612	chr16	3562074	3562075	rs8046072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs8046072-A	0.8017	4E-9	(MTAG)	0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
612	chr16	3577278	3577279	rs138922864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p13.3		rs138922864-?	NR	2E-10				NR [~ 8900000] (imputed)	N
612	chr16	3583172	3583173	rs3751837	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs3751837-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
612	chr16	3583172	3583173	rs3751837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.3	CLUAP1	rs3751837-T	0.2202	9E-28		0.0308	[0.025-0.036] unit decrease	Affymetrix [19819130] (imputed)	N
612	chr16	3583172	3583173	rs3751837	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.3	CLUAP1	rs3751837-T	0.2202	6E-17		0.0235	[0.018-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
612	chr16	3583172	3583173	rs3751837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.3		rs3751837-?	NR	1E-30				NR [~ 8900000] (imputed)	N
612	chr16	3583172	3583173	rs3751837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs3751837-?	NR	4E-11				NR [~ 8900000] (imputed)	N
612	chr16	3583172	3583173	rs3751837	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16p13.3	CLUAP1	rs3751837-T	0.22	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
612	chr16	3584178	3584179	rs17794023	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	16p13.3	CLUAP1	rs17794023-T	0.0754	1E-8		0.3193	unit increase	Illumina [519442]	N
612	chr16	3586229	3586230	rs9790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16p13.3		rs9790-T	NR	4E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
612	chr16	3598189	3598190	rs200989243	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	16p13.3		rs200989243-?	NR	1E-8		0.102799	[0.067-0.139] unit increase	NR [9800000] (imputed)	N
612	chr16	3599654	3599655	rs12448257	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs12448257-A	0.2185	9E-16		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
612	chr16	3599654	3599655	rs12448257	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p13.3	NA	rs12448257-A	0.2185	9E-16		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
612	chr16	3605762	3605762	rs397950303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16p13.3		rs397950303-CT	NR	7E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
612	chr16	3627357	3627358	rs758747	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p13.3	NR	rs758747-C	NR	2E-9		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
612	chr16	3627357	3627358	rs758747	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p13.3	NR	rs758747-T	0.2658971403345	2E-7		0.01722961	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
612	chr16	3627357	3627358	rs758747	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	NLRC3	rs758747-T	0.28	2E-10		0.023	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
612	chr16	3627357	3627358	rs758747	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	NLRC3	rs758747-T	0.265	7E-10	(EA)	0.023	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
612	chr16	3627357	3627358	rs758747	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	NLRC3	rs758747-T	0.264	8E-8	(EA, men)	0.026	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
612	chr16	3629226	3629227	rs2077235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs2077235-T	0.2373	5E-9		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
612	chr16	3634745	3634746	rs12933120	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p13.3	NR	rs12933120-C	0.8614	3E-10		0.0424	[0.029-0.056] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
612	chr16	3637428	3637429	rs7199766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p13.3		rs7199766-?	NR	3E-8				NR [~ 8900000] (imputed)	N
612	chr16	3647097	3647098	rs2240885	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16p13.3	SLX4	rs2240885-A	0.403	3E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
612	chr16	3656481	3656482	rs8061528	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p13.3	NR	rs8061528-C	0.7573	3E-14		0.0346	[0.026-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
612	chr16	3663230	3663231	rs11076781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p13.3		rs11076781-A	NR	5E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
613	chr16	3678873	3678874	rs398078462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16p13.3		rs398078462-G	NR	7E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
613	chr16	3678873	3678874	rs398078462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16p13.3		rs398078462-G	NR	4E-14		0.0207	[0.015-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
613	chr16	3707746	3707747	rs1053874	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p13.3	DNASE1	rs1053874-A	0.3229	5E-10		0.012	[0.0083-0.0157] unit increase	Illumina [246328]	N
613	chr16	3708691	3708692	rs1378360434	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs1378360434-A	0.01394	1E-8	(ARG1)	3.901	NR unit increase	Illumina [1671387] (imputed)	N
613	chr16	3709522	3709523	rs17183750	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16p13.3	NR	rs17183750-A	0.17	3E-9		0.0145	[0.0096-0.0194] unit increase	NR [NR]	N
613	chr16	3719343	3719344	rs11646287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.3	DNASE1, TRAP1	rs11646287-T	0.322831	3E-12		0.016482472	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
613	chr16	3719343	3719344	rs11646287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs11646287-T	0.368288	3E-21				Affymetrix, Illumina [24649327] (imputed)	N
613	chr16	3719343	3719344	rs11646287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs11646287-T	0.356008	1E-22				Affymetrix, Illumina [23114412] (imputed)	N
613	chr16	3725681	3725682	rs2074800	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	16p13.3	TRAP1	rs2074800-A	0.042553	4E-6		1.61775	[0.94-2.29] unit increase	NR [7263501] (imputed)	N
613	chr16	3728707	3728708	rs7203664	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16p13.3	TRAP1	rs7203664-T	0.3416	3E-7	(EA)	0.0019	[0.0011-0.0027] unit increase	Affymetrix [NR] (imputed)	N
613	chr16	3732594	3732595	rs111843862	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs111843862-T	0.249	7E-10		0.00773933	[0.0053-0.0102] unit increase	NR [9732723] (imputed)	N
613	chr16	3738026	3738027	rs2158962	31039275	Park SH	2019-04-30	J Gastroenterol Hepatol	Association of TRAP1 with Infliximab-Induced Mucosal Healing in Crohn's disease.	Infliximab-induced mucosal healing in Crohn's disease	15 Korean ancestry responders, 43 Korean ancestry non-responders	27 Korean ancestry responders, 27 Korean ancestry non-responders	16p13.3	TRAP1	rs2158962-A	0.54	1E-7		4.94	[2.65-9.24]	NR [522285]	N
613	chr16	3742347	3742348	rs36099109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	TRAP1	rs36099109-T	NR	1E-8		0.0233019	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
613	chr16	3746240	3746241	rs6500550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p13.3	TRAP1	rs6500550-T	0.301672	4E-22		0.02339413	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr16	3746240	3746241	rs6500550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p13.3	TRAP1	rs6500550-T	0.301673	5E-10		0.015100953	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr16	3746240	3746241	rs6500550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p13.3	TRAP1	rs6500550-T	0.301642	9E-25		0.02492523	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr16	3746240	3746241	rs6500550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p13.3	NR	rs6500550-T	0.304495	3E-24		0.02072	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
613	chr16	3746240	3746241	rs6500550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p13.3	NR	rs6500550-T	0.304296	6E-26		0.022363	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
613	chr16	3746240	3746241	rs6500550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	16p13.3	TRAP1	rs6500550-T	0.3028	1E-9		0.02400567	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr16	3746240	3746241	rs6500550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	16p13.3	TRAP1	rs6500550-T	0.3027	1E-9		0.02403534	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr16	3746240	3746241	rs6500550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	16p13.3	TRAP1	rs6500550-T	0.3027	2E-9		0.02363953	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr16	3746240	3746241	rs6500550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	16p13.3	TRAP1	rs6500550-T	0.3027	5E-10		0.02436507	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr16	3746240	3746241	rs6500550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	16p13.3	TRAP1	rs6500550-T	0.3028	4E-9		0.02317921	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
613	chr16	3746768	3746769	rs56340469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.3		rs56340469-?	NR	6E-15				NR [~ 8900000] (imputed)	N
613	chr16	3747041	3747042	rs1635404	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16p13.3	TRAP1	rs1635404-T	0.7073	6E-17		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
613	chr16	3747041	3747042	rs1635404	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16p13.3	TRAP1	rs1635404-T	0.7041	2E-15		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
613	chr16	3749384	3749385	rs11646280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	TRAP1	rs11646280-T	NR	4E-8		0.01964	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
613	chr16	3749396	3749397	rs11645975	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	16p13.3	TRAP1	rs11645975-G	0.74	4E-8				NR [> 9500000] (imputed)	N
613	chr16	3769580	3769581	rs56240109	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	16p13.3	TRAP1, CREBBP	rs56240109-G		5E-6		0.219	unit increase	Illumina [5767231] (imputed)	N
613	chr16	3773109	3773110	rs74856421	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	16p13.3	Intergenic	rs74856421-T	0.07	4E-7		1.26	[1.15-1.38]	Affymetrix, Illumina [7891602] (imputed)	N
613	chr16	3773489	3773490	rs7199513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs7199513-?	NR	1E-16				NR [~ 8900000] (imputed)	N
613	chr16	3778336	3778337	rs3751845	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	CREBBP	rs3751845-A	0.053	9E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
613	chr16	3789076	3789077	rs3025678	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	16p13.3	CREBBP	rs3025678-T	0.059	3E-18		0.43	[0.33-0.52] unit decrease	Affymetrix [339439]	N
613	chr16	3791392	3791393	rs130017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p13.3	CREBBP	rs130017-A	0.073875	6E-13		0.030685572	[0.022-0.039] unit increase	Affymetrix [93095623] (imputed)	N
613	chr16	3791392	3791393	rs130017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p13.3	CREBBP	rs130017-A	0.073898	1E-13		0.031759284	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
613	chr16	3791392	3791393	rs130017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs130017-?	NR	4E-10				NR [~ 8900000] (imputed)	N
613	chr16	3796146	3796147	rs129963	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	16p13.3	CREBBP	rs129963-T	0.42	9E-6	(Thiazides)			Affymetrix, Illumina [~ 2500000] (imputed)	N
614	chr16	3804323	3804324	rs11864123	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p13.3	CREBBP	rs11864123-A	0.0102351916544253	5E-6	(G_Coprococcus_HB)	1.34695	[0.77-1.92] unit decrease	Illumina [7711310] (imputed)	N
614	chr16	3867080	3867081	rs17199009	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16p13.3	NR	rs17199009-G	0.0654	2E-7		0.0158124	[0.0099-0.0217] unit increase	NR [9732723] (imputed)	N
614	chr16	3873641	3873642	rs1296720	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	16p13.3	NR	rs1296720-C	NR	3E-6				Affymetrix [9800000]	N
614	chr16	3873641	3873642	rs1296720	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.3	CREBBP	rs1296720-C	0.197	4E-10		0.83	[0.58-1.08] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr16	3946484	3946485	rs147176253	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	CREBBP	rs147176253-G	0.939175	4E-11		0.02543	[0.018-0.033] unit increase	NR [13737936] (imputed)	N
615	chr16	3959910	3959911	rs77256800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.3		rs77256800-?	NR	1E-12				NR [~ 8900000] (imputed)	N
615	chr16	3959910	3959911	rs77256800	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs77256800-?	NR	5E-12		0.0260106	[0.018-0.034] unit increase	Affymetrix [20259828] (imputed)	N
615	chr16	3962619	3962620	rs12446940	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	16p13.3	intergenic	rs12446940-A	0.3563	4E-6	(Ordinal I)	0.1929	[0.11-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
615	chr16	3969885	3969886	rs2283487	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	16p13.3	CREBBP, ADCY9	rs2283487-A	0.53	1E-10		1.2048193	[NR]	Illumina [803202]	N
615	chr16	3980444	3980445	rs8049367	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	16p13.3	CREBBP, ADCY9	rs8049367-C	NR	9E-12		1.35	[1.25-1.47]	Affymetrix [842556]	N
615	chr16	3984218	3984219	rs149658651	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC005736.1	rs149658651-?	NR	1E-9	(female)	0.662771	[NR] unit increase	Affymetrix [NR] (imputed)	N
615	chr16	3992751	3992752	rs12920416	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16p13.3	NR	rs12920416-T	0.2475	8E-7	(EA)	0.0412	[0.025-0.057] unit decrease	Illumina [~ 11800000] (imputed)	N
615	chr16	4006162	4006163	rs62036940	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs62036940-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
615	chr16	4009763	4009764	rs2540028	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs2540028-T	0.896367	1E-9		0.148782	[0.1-0.2] SD units decrease	Affymetrix, Illumina [36043646] (imputed)	N
615	chr16	4013466	4013467	rs2531995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16p13.3		rs2531995-T	NR	1E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
615	chr16	4013466	4013467	rs2531995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16p13.3	NR	rs2531995-?	NR	5E-9		0.04006278	[0.027-0.053] unit increase	Illumina [32062178] (imputed)	N
615	chr16	4013466	4013467	rs2531995	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs2531995-?	NR	9E-14		0.16821	[0.12-0.21] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4013466	4013467	rs2531995	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs2531995-?	NR	3E-7	(male)	0.18259	[0.11-0.25] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4013466	4013467	rs2531995	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs2531995-?	NR	1E-9	(female)	0.1497	[0.1-0.2] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.3	ADCY9	rs2531995-T	0.6156	1E-8		0.037	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16p13.3	ADCY9	rs2531995-T	0.6156	6E-7		0.0326	[0.02-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.6122	3E-6	(EA,women)	0.0288	[0.017-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.6114	8E-10	(EA)	0.0306	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.599	3E-6	(women)	0.0282	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.5972	9E-10		0.0297	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-?	NR	6E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-?	NR	6E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-?	NR	5E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-?	NR	5E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-?	NR	3E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.6114	5E-7	(EA, women)	0.0284	[0.017-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.6114	1E-6	(EA, men)	0.0342	[0.02-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.6114	1E-11	(EA)	0.0311	[0.022-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.5972	2E-11		0.0291	[0.02-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.5972	1E-6	(women)	0.0269	[0.016-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p13.3	ADCY9	rs2531995-T	0.5972	1E-6	(men)	0.0316	[0.019-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p13.3	NR	rs2531995-T	0.615629723953184	9E-15		0.024907207	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	16p13.3	ADCY9	rs2531995-T	0.33	7E-8		0.0315	[0.02-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr16	4013466	4013467	rs2531995	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p13.3	ADCY9	rs2531995-T	0.61	4E-8	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
615	chr16	4014281	4014282	rs2238435	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	16p13.3	ADCY9	rs2238435-C	0.3978	4E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
615	chr16	4014281	4014282	rs2238435	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p13.3	ADCY9	rs2238435-C	0.386247	3E-30		0.0164809	[0.014-0.019] unit decrease	Affymetrix [12370749]	N
615	chr16	4014281	4014282	rs2238435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs2238435-?	NR	2E-31				NR [~ 8900000] (imputed)	N
615	chr16	4014963	4014964	rs710893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs710893-?	NR	7E-20				NR [~ 8900000] (imputed)	N
615	chr16	4014963	4014964	rs710893	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs710893-?	NR	3E-19		0.0247942	[0.019-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
615	chr16	4015045	4015046	rs879619	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	16p13.3	NR	rs879619-G	0.864046	1E-9		0.0210598	[0.014-0.028] unit increase	Affymetrix [16585745] (imputed)	N
615	chr16	4015312	4015313	rs1045476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.3		rs1045476-G	NR	5E-18		0.0134	[0.01-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
615	chr16	4015312	4015313	rs1045476	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	16p13.3	ADCY9	rs1045476-G	0.827865209888325	4E-12		0.0427	[0.031-0.055] SD decrease	Illumina [22400000] (imputed)	N
615	chr16	4015312	4015313	rs1045476	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	16p13.3	ADCY9	rs1045476-A	0.18	3E-11		0.047	[0.033-0.061] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
615	chr16	4015315	4015316	rs1045475	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	ADCY9	rs1045475-A	0.1782	2E-19		0.0223	[0.017-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
615	chr16	4015728	4015729	rs879620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.3		rs879620-T	NR	8E-45		0.024	[0.021-0.027] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
615	chr16	4015728	4015729	rs879620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16p13.3		rs879620-T	0.331472	1E-14		0.0222189	[0.017-0.028] unit increase	Illumina [13479924] (imputed)	N
615	chr16	4015728	4015729	rs879620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16p13.3		rs879620-T	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
615	chr16	4015728	4015729	rs879620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.3		rs879620-T	NR	6E-35		0.0242	[0.02-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
615	chr16	4015728	4015729	rs879620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	16p13.3		rs879620-T	0.331553	6E-12		0.0232161	[0.017-0.03] unit increase	Illumina [13479178] (imputed)	N
615	chr16	4015728	4015729	rs879620	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p13.3		rs879620-T	0.61	7E-17				NR [NR] (imputed)	N
615	chr16	4015728	4015729	rs879620	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p13.3		rs879620-T	0.61	1E-19		0.014	% increase	NR [NR] (imputed)	N
615	chr16	4015728	4015729	rs879620	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting glucose (pairwise)	380,336 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	16p13.3	ADCY9	rs879620-T	0.6113	6E-13				Affymetrix, Illumina [2331072] (imputed)	N
615	chr16	4015728	4015729	rs879620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p13.3	NR	rs879620-T	NR	1E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr16	4015728	4015729	rs879620	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.3	ADCY9	rs879620-C	0.386749	6E-24		0.0142563	[0.011-0.017] unit decrease	Affymetrix [12370749]	N
615	chr16	4015728	4015729	rs879620	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p13.3	NR	rs879620-C	0.3847	9E-16		0.020561429	[0.016-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
615	chr16	4015728	4015729	rs879620	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs879620-?	NR	9E-6	(male)	0.11808	[0.066-0.17] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4015728	4015729	rs879620	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs879620-?	NR	3E-6	(female)	0.16508	[0.096-0.234] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4015728	4015729	rs879620	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.3	NR	rs879620-?	NR	1E-10		0.13982	[0.097-0.182] unit increase	Affymetrix [7794483] (imputed)	N
615	chr16	4015728	4015729	rs879620	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p13.3	NR	rs879620-C	NR	4E-14		0.025	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
615	chr16	4015728	4015729	rs879620	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16p13.3	ADCY9	rs879620-T	0.6152	1E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
615	chr16	4015728	4015729	rs879620	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p13.3	ADCY9	rs879620-T	0.62	9E-19		0.024	[0.018-0.03] unit increase	Illumina [6108953] (imputed)	N
615	chr16	4015728	4015729	rs879620	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	ADCY9	rs879620-T	0.6131	9E-10	(EA)	0.0288	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
615	chr16	4015728	4015729	rs879620	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	ADCY9	rs879620-T	0.6131	2E-6	(EA,women)	0.0274	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
615	chr16	4019349	4019350	rs2907272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs2907272-?	NR	2E-34				NR [~ 8900000] (imputed)	N
615	chr16	4020731	4020732	rs72762705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16p13.3		rs72762705-T	NR	2E-9		0.0364	[0.024-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
615	chr16	4020731	4020732	rs72762705	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs72762705-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
615	chr16	4021733	4021734	rs2531992	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	16p13.3	NR	rs2531992-A	0.16	5E-7		0.03	[0.018-0.042] unit decrease	NR [9704453]	N
615	chr16	4021733	4021734	rs2531992	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	16p13.3	NR	rs2531992-A	0.16	1E-8		0.03	[0.02-0.04] unit decrease	NR [9704453]	N
615	chr16	4021733	4021734	rs2531992	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	ADCY9	rs2531992-A	0.152443	5E-27		0.0276209	[0.023-0.033] unit decrease	NR [13737936] (imputed)	N
615	chr16	4021733	4021734	rs2531992	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	ADCY9	rs2531992-A	0.1542	9E-6	(EA, men)	0.0295	[0.017-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
615	chr16	4021733	4021734	rs2531992	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	ADCY9	rs2531992-A	0.1542	3E-9	(EA)	0.0282	[0.019-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
615	chr16	4022693	4022694	rs2540034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16p13.3		rs2540034-T	NR	3E-9		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
615	chr16	4022693	4022694	rs2540034	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p13.3	ADCY9	rs2540034-T	0.325	3E-12	(Japanese)	0.028	[0.02-0.036] unit increase	Illumina [6108953] (imputed)	N
615	chr16	4022702	4022703	rs7185966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.3		rs7185966-?	NR	2E-8				NR [~ 8900000] (imputed)	N
615	chr16	4022702	4022703	rs7185966	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p13.3	NA	rs7185966-A	0.2394	2E-16		0.0184	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
615	chr16	4029973	4029973	rs397812377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p13.3		rs397812377-GCT	0.54548	3E-8		0.0113856	[0.0073-0.0154] unit increase	Illumina [13479295] (imputed)	N
615	chr16	4029973	4029973	rs397812377	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.3	ADCY9	rs397812377-?	NR	6E-9		0.01694528	[0.011-0.023] unit increase	Illumina [27896057] (imputed)	N
615	chr16	4032580	4032581	rs2041247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	16p13.3	NR	rs2041247-C	NR	9E-13		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr16	4035067	4035068	rs2601777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs2601777-A	0.386	3E-17		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
615	chr16	4035067	4035068	rs2601777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p13.3	NA	rs2601777-A	0.386	3E-17		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
615	chr16	4038386	4038387	rs2444217	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p13.3	ADCY9	rs2444217-A	0.57	9E-8				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
615	chr16	4043174	4043175	rs2601791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs2601791-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
615	chr16	4048019	4048020	rs56387835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.3	ADCY9	rs56387835-A	0.102444	1E-9		0.02297238	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
615	chr16	4049839	4049840	rs10852639	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	16p13.3	ADCY9	rs10852639-A	0.04	6E-6	(male)	124.0	[71.08-176.92] unit increase	Illumina [6380737] (imputed)	N
615	chr16	4062435	4062436	rs12599911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.3	ADCY9	rs12599911-T	0.566964	3E-16		0.018284941	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr16	4065582	4065583	rs1967309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p13.3	ADCY9	rs1967309-A	0.39539	1E-20		0.02116686	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr16	4065582	4065583	rs1967309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs1967309-G	0.596325	4E-29				Affymetrix, Illumina [23467995] (imputed)	N
616	chr16	4065582	4065583	rs1967309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16p13.3	NR	rs1967309-G	0.603077	1E-30		0.022132	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
616	chr16	4065582	4065583	rs1967309	25583994	Tardif JC	2015-01-11	Circ Cardiovasc Genet	Pharmacogenomic determinants of the cardiovascular effects of dalcetrapib.	Response to Dalcetrapib treatment in acute coronary syndrome	2,845 European ancestry individuals	NA	16p13.3	ADCY9	rs1967309-G	0.55	2E-8		1.54	[1.32-1.79]	Illumina [5543264] (imputed)	N
616	chr16	4066890	4066891	rs12920508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16p13.3		rs12920508-C	NR	5E-16		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
616	chr16	4071721	4071722	rs67335251	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	16p13.3	intergenic	rs67335251-A	0.059	2E-6		3.06	[1.89-4.96]	Illumina [1556551]	N
616	chr16	4072014	4072015	rs72762782	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		ADCY9	rs72762782-G	0.13	9E-6				Illumina [1679420] (imputed)	N
616	chr16	4103870	4103871	rs2601828	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	16p13.3	ADCY9	rs2601828-A	0.222	1E-6		1.12	[1.12-1.31]	Illumina [528745]	N
616	chr16	4106787	4106788	rs11076805	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16p13.3	ADCY9	rs11076805-C	0.75	2E-8		1.0869565	[1.05-1.11]	Illumina [~ 11500000] (imputed)	N
616	chr16	4106787	4106788	rs11076805	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	16p13.3	ADCY9	rs11076805-C	0.75	1E-8		1.0869565	[1.05-1.11] (BCAC)	Illumina [~ 11500000] (imputed)	N
616	chr16	4108158	4108159	rs56278937	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16p13.3	NR	rs56278937-T	0.5071	1E-6	(EA)	0.0317	[0.019-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
616	chr16	4120075	4120076	rs12598529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16p13.3	ADCY9	rs12598529-A	0.6472	8E-9		0.02185622	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr16	4127081	4127081	rs200021532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p13.3	ADCY9	rs200021532-AG	0.108638	1E-10		0.023183003	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
616	chr16	4128852	4128853	rs1034906	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.3	ADCY9	rs1034906-C	0.1482	3E-8		0.2067	[0.13-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
616	chr16	4135561	4135562	rs388430	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	16p13.3	NR	rs388430-C	0.683193	3E-10		0.0167293	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
616	chr16	4137261	4137262	rs11647570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p13.3		rs11647570-?	NR	3E-10				NR [~ 8900000] (imputed)	N
616	chr16	4141126	4141127	rs758445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs758445-?	NR	8E-10				NR [~ 8900000] (imputed)	N
616	chr16	4141727	4141728	rs2601825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.3	ADCY9	rs2601825-C	0.116586	1E-12		0.024611041	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr16	4148239	4148240	rs447361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p13.3	ADCY9	rs447361-G	0.669251	1E-17		0.020180507	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
616	chr16	4148239	4148240	rs447361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs447361-G	0.632011	2E-17				Affymetrix, Illumina [23472807] (imputed)	N
616	chr16	4148239	4148240	rs447361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p13.3	NR	rs447361-G	0.666344	6E-19		0.017926	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
616	chr16	4156422	4156423	rs437115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	16p13.3	NR	rs437115-T	0.564624	4E-24		0.0278697	[0.022-0.033] unit increase	Affymetrix [16580851] (imputed)	N
616	chr16	4157695	4157696	rs370222	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	16p13.3	NR	rs370222-G	0.696779	3E-12		0.0100454	[0.0073-0.0128] unit increase	Affymetrix [16578495] (imputed)	N
616	chr16	4161792	4161793	rs2532004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16p13.3	ADCY9	rs2532004-C	0.685892	5E-11		0.015752966	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
616	chr16	4170522	4170523	rs2531999	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		SRL	rs2531999-?	NR	9E-6	(LPE 16:0)	0.26490536	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
616	chr16	4177763	4177764	rs28859154	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	16p13.3	NR	rs28859154-C		6E-6		0.0835	[0.047-0.12] SD units decrease	NR [10700000] (imputed)	N
616	chr16	4187064	4187065	rs76356591	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	16p13.3	NR	rs76356591-T	NR	6E-6		0.5878	NR unit increase	Illumina [4533042] (imputed)	N
617	chr16	4213368	4213369	rs153035	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16p13.3	ADCY9	rs153035-A	0.296841186919365	9E-6		0.0025997	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
617	chr16	4229381	4229381	rs369290886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p13.3	NR	rs369290886-TTTTTTTG	NR	3E-9		0.0168	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
617	chr16	4234916	4234917	rs4786466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	RP11-95P2.3	rs4786466-A	0.562158	6E-9		0.013207739	[0.0087-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr16	4255179	4255180	rs7195486	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.3	SRL	rs7195486-C	0.213	9E-7		0.55	[0.33-0.77] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
617	chr16	4257312	4257313	rs75825892	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	SRL	rs75825892-A	0.099	5E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
617	chr16	4266061	4266062	rs28575249	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SRL	5,362 Icelandic ancestry individuals	NA	16p13.3		rs28575249-A	0.498	1E-15		0.146264	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
617	chr16	4269557	4269558	rs8046884	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	SRL	rs8046884-C	0.495	6E-10	(SRL, 10940_25_3)	0.15032765	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
617	chr16	4277476	4277477	rs79525044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	SRL	rs79525044-G	NR	2E-10		0.0226873	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
617	chr16	4277476	4277477	rs79525044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	SRL	rs79525044-G	NR	6E-13		0.0245224	[0.018-0.031] unit increase	Affymetrix [323123] (imputed)	N
617	chr16	4279044	4279045	rs4786476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	16p13.3		rs4786476-A	NR	3E-8		0.0619	[0.04-0.084] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
617	chr16	4281388	4281389	rs11863444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	SRL	rs11863444-T	NR	9E-9		0.0200788	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
617	chr16	4282283	4282284	rs79321945	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16p13.3	SRL	rs79321945-C	0.78	2E-10		0.5	[0.34-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
617	chr16	4295907	4295908	rs757461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p13.3		rs757461-T	NR	7E-13		0.0225	[0.016-0.029] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
617	chr16	4295907	4295908	rs757461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs757461-T	0.078781	1E-14		0.0316508	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr16	4295907	4295908	rs757461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.3	NR	rs757461-T	0.079164	6E-18		0.031283	[0.024-0.038] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
617	chr16	4295907	4295908	rs757461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.3		rs757461-?	NR	2E-13				NR [~ 8900000] (imputed)	N
617	chr16	4296704	4296705	rs17621096	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	16p13.3		rs17621096-?	NR	6E-11				NR [9705931] (imputed)	N
617	chr16	4296784	4296785	rs757462	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.3	LINC01569	rs757462-T	0.6507	1E-10		0.1346	[0.093-0.176] mmHg decrease	Affymetrix [NR] (imputed)	N
617	chr16	4296985	4296986	rs2386886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16p13.3		rs2386886-A	NR	8E-20		0.0331	[0.026-0.04] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs2386886-A	0.0786829999999999	1E-20		0.0398166	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs2386886-A	0.078721	1E-19		0.0374185	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2386886-A	0.0821922	2E-18				Affymetrix, Illumina [24332387] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2386886-A	0.082159	2E-28				Affymetrix, Illumina [24246363] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p13.3	NR	rs2386886-A	0.079105	6E-28		0.038944	[0.032-0.046] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs2386886-A	0.0820431	2E-26				Affymetrix, Illumina [20825802] (imputed)	N
617	chr16	4296985	4296986	rs2386886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16p13.3	NR	rs2386886-A	0.079078	1E-26		0.038429	[0.031-0.045] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
617	chr16	4296985	4296986	rs2386886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs2386886-?	NR	1E-23				NR [~ 8900000] (imputed)	N
617	chr16	4297650	4297651	rs4785955	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	16p13.3	LOC100507501	rs4785955-?	NA	3E-9		1.79	[1.2-2.38] unit increase	Affymetrix [5541230] (imputed)	N
617	chr16	4297650	4297651	rs4785955	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	16p13.3	RP11-95P2.1	rs4785955-G	0.7826	2E-11		0.1721	[0.12-0.22] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
617	chr16	4297778	4297779	rs735052	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16p13.3	SRL, TFAP4	rs735052-C	0.78	1E-8		5.68	z-score increase	Affymetrix [4311822] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	9E-10	(158 ms)	0.0373949	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	9E-10	(126 ms)	0.0380978	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	8E-10	(162 ms)	0.0381214	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	7E-10	(156 ms)	0.0378104	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	6E-9	(134 ms)	0.0364323	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	6E-10	(140 ms)	0.0394951	[0.027-0.052] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	6E-10	(138 ms)	0.0398911	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	6E-10	(118 ms)	0.040055	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	5E-9	(166 ms)	0.0364928	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	4E-9	(124 ms)	0.0366272	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	4E-9	(104 ms)	0.0374876	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	4E-8	(88 ms)	0.0355967	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	4E-8	(174 ms)	0.0335186	[0.02-0.047] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	4E-8	(106 ms)	0.0350656	[0.022-0.048] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-9	(146 ms)	0.0375143	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-9	(120 ms)	0.0375606	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-9	(116 ms)	0.0380716	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-9	(108 ms)	0.0379818	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-8	(184 ms)	0.034196	[0.021-0.047] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-8	(182 ms)	0.0346588	[0.022-0.048] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-8	(178 ms)	0.0332016	[0.02-0.046] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-8	(170 ms)	0.034402	[0.021-0.047] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	3E-8	(168 ms)	0.0345369	[0.022-0.048] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-9	(136 ms)	0.0384654	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-9	(128 ms)	0.0379081	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-9	(112 ms)	0.0386937	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-8	(176 ms)	0.0336484	[0.021-0.047] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-8	(172 ms)	0.0344766	[0.021-0.047] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-8	(150 ms)	0.0357179	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-8	(122 ms)	0.035813	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-8	(114 ms)	0.0362622	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	2E-10	(110 ms)	0.0413503	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	1E-9	(164 ms)	0.038287	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	1E-9	(148 ms)	0.0384461	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	1E-9	(102 ms)	0.0394003	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	1E-8	(154 ms)	0.0357227	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.3	SRL, TFAP4	rs735052-C	0.775639	1E-8	(142 ms)	0.036062	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
617	chr16	4297778	4297779	rs735052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs735052-G	0.223796	6E-10		0.0196468	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr16	4297778	4297779	rs735052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs735052-G	0.223825	1E-12		0.018850757	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr16	4301526	4301527	rs75253522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p13.3		rs75253522-T	NR	9E-12		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
617	chr16	4303254	4303255	rs58329848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.3	RP11-95P2.1	rs58329848-C	0.0804510000000001	5E-14		0.031540688	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
617	chr16	4304265	4304266	rs67770272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs67770272-?	NR	1E-11				NR [~ 8900000] (imputed)	N
617	chr16	4304565	4304566	rs2386887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	RP11-95P2.1	rs2386887-C	NR	1E-10		0.0195923	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
617	chr16	4304778	4304779	rs2386889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	RP11-95P2.1	rs2386889-T	NR	6E-11		0.0216459	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
617	chr16	4306916	4306917	rs73503276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p13.3		rs73503276-T	NR	2E-21		0.0331	[0.026-0.04] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
617	chr16	4310463	4310464	rs751034744	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	16p13.3		rs751034744-?	NR	3E-8		0.410593	[0.27-0.55] unit increase	NR [9800000] (imputed)	N
617	chr16	4321604	4321605	rs251733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.3	TFAP4	rs251733-T	0.523548	2E-11		0.01520708	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr16	4322040	4322041	rs144403225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16p13.3		rs144403225-G	0.25	5E-17		8.39	z score increase	Affymetrix [9061022] (imputed)	N
617	chr16	4322040	4322041	rs144403225	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p13.3	NR	rs144403225-G	0.246	1E-15				NR [9056863] (imputed)	N
617	chr16	4323966	4323967	rs3747570	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16p13.3	SRL	rs3747570-T	0.7573	2E-9		0.4769	[0.32-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
618	chr16	4329766	4329767	rs55756394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	TFAP4	rs55756394-T	NR	2E-8		0.029003	[0.019-0.039] unit increase	Affymetrix [323123] (imputed)	N
618	chr16	4330569	4330570	rs233953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs233953-G	0.573044	5E-17				Affymetrix, Illumina [24588908] (imputed)	N
618	chr16	4330939	4330940	rs72766527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	TFAP4	rs72766527-C	NR	4E-9		0.0193329	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
618	chr16	4330939	4330940	rs72766527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	TFAP4	rs72766527-C	NR	1E-8		0.0187601	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
618	chr16	4334961	4334962	rs72766530	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16p13.3	SRL, TFAP4	rs72766530-?		4E-13				NR [7428630] (imputed)	N
618	chr16	4337508	4337509	rs72766532	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p13.3		rs72766532-T	0.25	7E-29		11.15	z score increase	Affymetrix [9061022] (imputed)	N
618	chr16	4337508	4337509	rs72766532	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16p13.3	NR	rs72766532-T	0.246	8E-12				NR [9056863] (imputed)	N
618	chr16	4339683	4339684	rs2387280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16p13.3	TFAP4	rs2387280-T	NR	8E-9		0.0210653	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
618	chr16	4339683	4339684	rs2387280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16p13.3	TFAP4	rs2387280-T	NR	2E-8		0.0205261	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
618	chr16	4339683	4339684	rs2387280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.3		rs2387280-T	0.244528	5E-10		0.016403535	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
618	chr16	4339683	4339684	rs2387280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs2387280-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
618	chr16	4342212	4342213	rs112744140	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p13.3		rs112744140-T	0.25	5E-11		6.57	z score increase	Affymetrix [9061022] (imputed)	N
618	chr16	4343067	4343067	rs113733630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	TFAP4	rs113733630-AGTTT	NR	5E-18		0.0323164	[0.025-0.04] unit increase	Affymetrix [323858] (imputed)	N
618	chr16	4343067	4343067	rs113733630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	TFAP4	rs113733630-AGTTT	NR	1E-8		0.0187982	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
618	chr16	4343067	4343067	rs113733630	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	TFAP4	rs113733630-AGTTT	NR	5E-22		0.0344978	[0.027-0.042] unit increase	Affymetrix [323123] (imputed)	N
618	chr16	4343067	4343067	rs113733630	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	16p13.3	TFAP4, GLIS2	rs113733630-A	NR	7E-6	(adults)	0.025	[0.013-0.037] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
618	chr16	4343838	4343839	rs4785958	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	16p13.3	NR	rs4785958-C	0.7619	2E-14		0.0153	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
618	chr16	4348579	4348580	rs72766551	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16p13.3	GLIS2	rs72766551-C	0.753377	6E-14		0.00199356	[0.0015-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
618	chr16	4348634	4348635	rs12930815	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	16p13.3		rs12930815-C	NR	6E-6		0.00510344	[0.0029-0.0073] years increase	NR [7400000] (imputed)	N
618	chr16	4348634	4348635	rs12930815	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	16p13.3		rs12930815-C	NR	3E-9		0.019344494	[0.013-0.026] years increase	NR [7400000] (imputed)	N
618	chr16	4349110	4349111	rs9921192	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	16p13.3	GLIS2, TFAP4	rs9921192-C	0.5	1E-9		0.0350975	[0.024-0.046] unit increase	Affymetrix [10109774] (imputed)	N
618	chr16	4360283	4360284	rs3901638	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	GLIS2	rs3901638-A	0.69622	1E-11		0.0135996	[0.0097-0.0175] unit increase	NR [13737936] (imputed)	N
618	chr16	4360313	4360314	rs3848370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	GLIS2	rs3848370-C	NR	9E-14		0.0282935	[0.021-0.036] unit increase	Affymetrix [323858] (imputed)	N
618	chr16	4360313	4360314	rs3848370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	GLIS2	rs3848370-C	NR	6E-21		0.0341768	[0.027-0.041] unit increase	Affymetrix [323123] (imputed)	N
618	chr16	4360313	4360314	rs3848370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p13.3	NR	rs3848370-C	NR	2E-10		0.0179	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
618	chr16	4360313	4360314	rs3848370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16p13.3		rs3848370-?	NR	2E-16				NR [~ 8900000] (imputed)	N
618	chr16	4361137	4361138	rs56104880	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	16p13.3	GLIS2-AS1	rs56104880-T	0.6948	1E-7		0.0147	[0.0092-0.0202] unit increase	Affymetrix [19819130] (imputed)	N
618	chr16	4361137	4361138	rs56104880	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.3	GLIS2-AS1	rs56104880-T	0.6948	5E-15		0.0205	[0.015-0.026] unit increase	Affymetrix [19819130] (imputed)	N
618	chr16	4361137	4361138	rs56104880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs56104880-?	NR	5E-26				NR [~ 8900000] (imputed)	N
618	chr16	4382606	4382607	rs9938257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	GLIS2, PAM16	rs9938257-G	NR	4E-8		0.0187305	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4388727	4388728	rs116981725	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GLIS2	rs116981725-?	NR	9E-9		1.52845	[NR] unit decrease	Affymetrix [NR] (imputed)	N
618	chr16	4389927	4389928	rs143205344	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.3	NR	rs143205344-T	0.00570616	2E-8		0.11468	[0.074-0.155] unit increase	NR [19129689] (imputed)	N
618	chr16	4390872	4390873	rs73507245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PAM16, CORO7-PAM16	rs73507245-G	NR	2E-9		0.0353709	[0.024-0.047] unit decrease	Affymetrix [323123] (imputed)	N
618	chr16	4390872	4390873	rs73507245	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs73507245-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
618	chr16	4391039	4391040	rs2072151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	PAM16, CORO7-PAM16	rs2072151-C	NR	3E-8		0.0272571	[0.018-0.037] unit decrease	Affymetrix [323858] (imputed)	N
618	chr16	4391732	4391733	rs12445693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PAM16, CORO7-PAM16	rs12445693-A	NR	3E-11		0.0315007	[0.022-0.041] unit decrease	Affymetrix [323123] (imputed)	N
618	chr16	4395240	4395241	rs611704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	PAM16, CORO7-PAM16	rs611704-A	NR	1E-8		0.0410113	[0.027-0.055] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4395240	4395241	rs611704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	PAM16, CORO7-PAM16	rs611704-A	NR	1E-8		0.0410936	[0.027-0.055] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4395240	4395241	rs611704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs611704-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
618	chr16	4400282	4400283	rs495664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	PAM16, CORO7-PAM16	rs495664-T	NR	1E-8		0.0229008	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
618	chr16	4400282	4400283	rs495664	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	PAM16, CORO7-PAM16	rs495664-T	NR	3E-16		0.0313959	[0.024-0.039] unit decrease	Affymetrix [323123] (imputed)	N
618	chr16	4408940	4408941	rs7191812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs7191812-T	NR	2E-8		0.0256356	[0.017-0.035] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4408940	4408941	rs7191812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs7191812-T	NR	4E-8		0.0251604	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4409878	4409879	rs8061527	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs8061527-G	NR	1E-11		0.53	[0.37-0.69] unit decrease	Illumina [97506867]	N
618	chr16	4409878	4409879	rs8061527	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs8061527-G	NR	8E-12		0.22	[0.16-0.28] unit decrease	Illumina [94681438]	N
618	chr16	4415695	4415696	rs3747577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16p13.3	CORO7-PAM16, CORO7	rs3747577-C	NR	9E-10		0.0220232	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
618	chr16	4415695	4415696	rs3747577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16p13.3	CORO7-PAM16, CORO7	rs3747577-C	NR	6E-9		0.0208922	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
618	chr16	4415695	4415696	rs3747577	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	16p13.3	NR	rs3747577-C	0.26	3E-28		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
618	chr16	4415695	4415696	rs3747577	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	16p13.3	NR	rs3747577-C	0.26	5E-8				Affymetrix [2446094] (imputed)	N
618	chr16	4419853	4419854	rs75345455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs75345455-?	NR	2E-11				NR [~ 8900000] (imputed)	N
618	chr16	4420817	4420817	rs35193388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs35193388-G	NR	5E-9		0.0188617	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
618	chr16	4422304	4422305	rs886860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs886860-G	NR	4E-10		0.0205739	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
618	chr16	4422606	4422607	rs7200336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs7200336-G	NR	5E-16		0.0264519	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4422606	4422607	rs7200336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs7200336-G	NR	1E-15		0.026127	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4422606	4422607	rs7200336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.3		rs7200336-?	NR	3E-26				NR [~ 8900000] (imputed)	N
618	chr16	4423367	4423368	rs4786485	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs4786485-?	NR	7E-21				Affymetrix [~ 8270000] (imputed)	N
618	chr16	4425527	4425528	rs8052826	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	CORO7-PAM16	rs8052826-A	0.214142	3E-9		0.0135224	[0.0091-0.018] unit increase	NR [13737936] (imputed)	N
618	chr16	4425527	4425528	rs8052826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.3		rs8052826-?	NR	2E-12				NR [~ 8900000] (imputed)	N
618	chr16	4425527	4425528	rs8052826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs8052826-?	NR	5E-12		0.0184003	[0.013-0.023] unit increase	Affymetrix [20259828] (imputed)	N
618	chr16	4428883	4428884	rs1291695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs1291695-G	NR	2E-8		0.0166344	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4428883	4428884	rs1291695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs1291695-G	NR	3E-8		0.016596	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4429917	4429917	rs769992561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	CORO7-PAM16, CORO7, VASN	rs769992561-TGCATGGTGGCTG	NR	4E-12		0.0244176	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
618	chr16	4431766	4431767	rs148092711	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.3	CORO7-PAM16	rs148092711-C	0.99473	4E-14		0.0974273	[0.072-0.123] unit increase	NR [13737936] (imputed)	N
618	chr16	4431766	4431767	rs148092711	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs148092711-?	NR	7E-11		0.0950537	[0.067-0.123] unit increase	Affymetrix [20259828] (imputed)	N
618	chr16	4432028	4432029	rs3810818	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16p13.3		rs3810818-A	0.2245	2E-12		0.1879067	[0.14-0.24] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
618	chr16	4432028	4432029	rs3810818	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16p13.3		rs3810818-A	0.2246	7E-12		0.12715918	[0.09-0.164] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
618	chr16	4432028	4432029	rs3810818	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	16p13.3	VASN	rs3810818-A	0.2293	6E-7		0.0185	[0.011-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4432028	4432029	rs3810818	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	16p13.3	VASN	rs3810818-A	0.2223	4E-6		0.0179	[0.01-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4432028	4432029	rs3810818	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	16p13.3	VASN	rs3810818-A	0.2313	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4432028	4432029	rs3810818	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	16p13.3	VASN	rs3810818-A	0.2233	1E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4433607	4433608	rs3840981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p13.3	CORO7-PAM16, CORO7	rs3840981-G	0.76377	3E-12		0.018301222	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr16	4436444	4436445	rs1298104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p13.3		rs1298104-G	NR	3E-12		0.025	[0.018-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
618	chr16	4439130	4439131	rs1530088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs1530088-C	NR	1E-8		0.0186198	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4439130	4439131	rs1530088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs1530088-C	NR	2E-8		0.0183422	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4440425	4440426	rs917304	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	16p13.3	NR	rs917304-C	0.2231	1E-19		0.0195	[0.015-0.024] unit increase	NR [~ 27400000] (imputed)	N
618	chr16	4441616	4441617	rs757593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.3	Intergenic	rs757593-A	0.2768	3E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
618	chr16	4441616	4441617	rs757593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.3	Intergenic	rs757593-A	0.2768	3E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
618	chr16	4441616	4441617	rs757593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs757593-A	0.2763	6E-9	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
618	chr16	4442526	4442527	rs4786488	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.3		rs4786488-?	NR	4E-9		0.0143967	[0.0098-0.019] unit increase	Affymetrix [20259828] (imputed)	N
618	chr16	4445326	4445327	rs3747579	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	16p13.3	CORO7	rs3747579-C	0.3012	2E-11		0.0221	[0.016-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4445326	4445327	rs3747579	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	16p13.3	CORO7	rs3747579-C	0.2769	4E-11		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4445326	4445327	rs3747579	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	16p13.3	CORO7	rs3747579-C	0.2993	2E-13		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4445326	4445327	rs3747579	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	16p13.3	CORO7	rs3747579-C	0.2779	4E-13		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
618	chr16	4445326	4445327	rs3747579	30389748	Emdin CA	2018-11-02	Diabetes	DNA Sequence Variation in ACVR1C Encoding the Activin Receptor-Like Kinase 7 Influences Body Fat Distribution and Protects Against Type 2 Diabetes.	Waist-to-hip ratio adjusted for BMI	335,660 European ancestry individuals, 69,909 individuals	210,088 European ancestry individuals, 14,371 individuals	16p13.3	CORO7	rs3747579-C	NR	3E-14		0.019	[0.015-0.023] unit increase	Illumina [614042]	N
618	chr16	4445326	4445327	rs3747579	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	CORO7	rs3747579-T	0.726	7E-9	(EA)	0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
618	chr16	4445326	4445327	rs3747579	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.3	CORO7	rs3747579-T	0.726	6E-6	(EA, women)	0.0231	[0.013-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
618	chr16	4450798	4450798	rs373023916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.3	CORO7-PAM16, CORO7	rs373023916-CAATAATAAT	0.707419	4E-12		0.017161904	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr16	4453318	4453319	rs4785960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs4785960-C	NR	9E-12		0.0212869	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4453318	4453319	rs4785960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CORO7-PAM16, CORO7	rs4785960-C	NR	1E-11		0.0210889	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
618	chr16	4455674	4455675	rs3747580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.3	CORO7-PAM16, CORO7	rs3747580-A	0.748137	5E-10		0.016048728	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr16	4462896	4462897	rs11648292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.3		rs11648292-?	NR	5E-9				NR [~ 8900000] (imputed)	N
619	chr16	4469283	4469284	rs13335685	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16p13.3	NR	rs13335685-?	NR	6E-10		1.0612	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
619	chr16	4470026	4470027	rs6500596	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p13.3	CORO7-PAM16	rs6500596-G	NR	2E-7		1.0582011	[1.04-1.08]	Illumina [6627481] (imputed)	N
619	chr16	4470026	4470027	rs6500596	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p13.3	CORO7-PAM16	rs6500596-G	NR	1E-6	(EA)	1.0632641	[1.04-1.09]	Illumina [6627481] (imputed)	N
619	chr16	4470026	4470027	rs6500596	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	16p13.3	CDIP1, CORO7, DNAJA3, NMRAL1	rs6500596-G	NR	5E-9		1.0649627	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
619	chr16	4476088	4476089	rs1139652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.3		rs1139652-?	NR	2E-9				NR [~ 8900000] (imputed)	N
619	chr16	4479757	4479758	rs117126914	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	16p13.3	GLIS2, VASN, CORO7, HMOX2, PAM16, NMRAL1, DNAJA3	rs117126914-?	NR	2E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
619	chr16	4484395	4484396	rs1139653	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	16p13.3	DNAJA3	rs1139653-A	0.2821	3E-8		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
619	chr16	4484395	4484396	rs1139653	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	16p13.3	DNAJA3	rs1139653-A	0.2755	5E-8		0.0189	[0.012-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
619	chr16	4484395	4484396	rs1139653	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	16p13.3	DNAJA3	rs1139653-A	0.2841	4E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
619	chr16	4484395	4484396	rs1139653	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	16p13.3	DNAJA3	rs1139653-A	0.2762	1E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
619	chr16	4484395	4484396	rs1139653	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16p13.3	NR	rs1139653-A	0.2851	7E-20		0.0181	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
619	chr16	4484395	4484396	rs1139653	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p13.3	NA	rs1139653-A	0.2851	1E-13		0.0147	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
619	chr16	4484395	4484396	rs1139653	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16p13.3	NR	rs1139653-A	0.2851	1E-13		0.0147	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
619	chr16	4488190	4488191	rs28577186	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	16p13.3	NR	rs28577186-?	NR	4E-14				NR [up to 7000000]	N
619	chr16	4488190	4488191	rs28577186	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.3	DNAJA3	rs28577186-G	0.335431	4E-14		0.0160261	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
619	chr16	4489029	4489030	rs66717543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16p13.3	DNAJA3	rs66717543-T	NR	2E-9		0.0203262	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
619	chr16	4489029	4489030	rs66717543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16p13.3	DNAJA3	rs66717543-T	NR	1E-8		0.0193915	[0.013-0.026] unit increase	Affymetrix [127266] (imputed)	N
619	chr16	4489029	4489030	rs66717543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	16p13.3	DNAJA3	rs66717543-T	NR	1E-8		0.0197724	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
619	chr16	4489029	4489030	rs66717543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	DNAJA3	rs66717543-T	NR	3E-13		0.0242501	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
619	chr16	4497198	4497199	rs6500601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16p13.3	DNAJA3	rs6500601-C	0.748172	2E-9		0.015594397	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr16	4497450	4497451	rs6500602	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.3	NR	rs6500602-T	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
619	chr16	4515333	4515334	rs6500609	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	16p13.3		rs6500609-C	0.1103	5E-9		0.93538225	[0.914714221-0.956517293]	Affymetrix, Illumina [NR] (imputed)	N
619	chr16	4518391	4518392	rs4424915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16p13.3		rs4424915-?	NR	5E-8				NR [~ 8900000] (imputed)	N
619	chr16	4519438	4519439	rs11557236	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NMRAL1	rs11557236-A	0.082	2E-28	(NmrA-like family domain-containing protein 1, NMRAL1.13988.67.3)	0.49	[0.41-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
619	chr16	4521568	4521569	rs190275219	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	16p13.3	NMRAL1	rs190275219-A	0.0019	6E-7		0.9382	[0.57-1.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
619	chr16	4563540	4563541	rs117269052	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDIP1	rs117269052-?	NR	4E-8	(male)	2.72203	[NR] unit decrease	Affymetrix [NR] (imputed)	N
619	chr16	4570349	4570350	rs8046785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CDIP1	rs8046785-C	NR	3E-8		0.0162786	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
619	chr16	4570349	4570350	rs8046785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CDIP1	rs8046785-C	NR	4E-8		0.0161065	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
619	chr16	4570349	4570350	rs8046785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.3	CDIP1	rs8046785-C	NR	4E-8		0.0174553	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
620	chr16	4591207	4591208	rs3859154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.3	CDIP1	rs3859154-T	0.092308	7E-10		0.023716722	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
620	chr16	4591207	4591208	rs3859154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p13.3	NR	rs3859154-T	0.092219	9E-11		0.022482	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
620	chr16	4593039	4593040	rs1641866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.3	CDIP1	rs1641866-A	NR	3E-8		0.017692	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
620	chr16	4593039	4593040	rs1641866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.3	CDIP1	rs1641866-A	NR	2E-8		0.0179225	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
620	chr16	4593363	4593364	rs1641867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs1641867-C	0.01742	2E-8	(PLIN3)	0.166	NR unit increase	Illumina [1671387] (imputed)	N
620	chr16	4594502	4594503	rs1641868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	CDIP1	rs1641868-G	NR	3E-10		0.0196775	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
620	chr16	4594670	4594671	rs1684600	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16p13.3		rs1684600-?	NR	2E-8		0.0125301	[0.0082-0.0169] unit decrease	NR [6912294] (imputed)	N
620	chr16	4598557	4598558	rs1684583	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs1684583-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
620	chr16	4600175	4600176	rs34115721	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	C16orf96	rs34115721-G	NR	8E-9		0.0220104	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
620	chr16	4605330	4605330	rs71139640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	C16orf96	rs71139640-T	NR	2E-10		0.0219159	[0.015-0.029] unit increase	Affymetrix [321169] (imputed)	N
620	chr16	4605560	4605561	rs2909034	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.3	NR	rs2909034-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
620	chr16	4615372	4615373	rs4238850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p13.3	C16orf96	rs4238850-G	NR	4E-8		0.0175641	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
620	chr16	4618930	4618931	rs11648328	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	16p13.3		rs11648328-C	0.265	3E-7		1.8		Illumina [5411261] (imputed)	N
620	chr16	4618930	4618931	rs11648328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	C16orf96	rs11648328-C	NR	4E-8		0.018353	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
620	chr16	4624129	4624130	rs36108764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.3	C16orf96	rs36108764-A	0.195867	1E-9		0.016852574	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
620	chr16	4624129	4624130	rs36108764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p13.3	NR	rs36108764-G	0.804956	2E-11		0.00935314	[0.0065-0.0122] unit increase	Affymetrix [16582621] (imputed)	N
620	chr16	4624129	4624130	rs36108764	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16p13.3	NR	rs36108764-G	0.804956	2E-10		0.00952835	[0.0065-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
620	chr16	4630529	4630530	rs4786525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	11,974 African American or Afro-Caribbean and African ancestry individuals	NA	16p13.3	NR	rs4786525-T	0.687515	3E-10		0.091052	[0.063-0.119] SD units decrease	Affymetrix, Illumina [36043646] (imputed)	N
620	chr16	4643947	4643948	rs934924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p13.3		rs934924-G	NR	5E-13		0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
620	chr16	4646646	4646647	rs12924783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.3	C16orf96	rs12924783-T	0.160945	2E-9		0.018454198	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
620	chr16	4646877	4646878	rs8050907	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	C16orf96, LOC342346	rs8050907-A	0.027	7E-7	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
620	chr16	4647416	4647417	rs2896906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p13.3		rs2896906-C	NR	2E-11		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
620	chr16	4657904	4657905	rs35416548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.3		rs35416548-?	NR	4E-10				NR [~ 8900000] (imputed)	N
620	chr16	4664996	4664997	rs841189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.3	UBALD1	rs841189-A	0.173259	7E-10		0.01841516	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
620	chr16	4667689	4667690	rs841194	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16p13.3	NR	rs841194-G	0.822098	7E-11		0.0271929	[0.019-0.035] unit increase	Affymetrix [16577313] (imputed)	N
620	chr16	4674148	4674149	rs3848374	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Milk allergy (maternal genetic effects)	275 European ancestry complete and incomplete trios	NA	16p13.3	MGRN1	rs3848374-?	NR	4E-6				Illumina [NR]	N
620	chr16	4674953	4674954	rs3747587	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.3	NR	rs3747587-G	0.814054	3E-21		0.00984582	[0.0077-0.012] unit increase	Affymetrix [16582909] (imputed)	N
620	chr16	4674953	4674954	rs3747587	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.3	NR	rs3747587-G	0.814054	7E-17		0.00966604	[0.0073-0.012] unit increase	Affymetrix [16582965] (imputed)	N
620	chr16	4676659	4676660	rs3859158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.3	MGRN1	rs3859158-A	0.815044	1E-9		0.017331127	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
620	chr16	4676659	4676660	rs3859158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs3859158-A	0.82596	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
620	chr16	4676659	4676660	rs3859158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p13.3	NR	rs3859158-A	0.814912	9E-12		0.016985	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
620	chr16	4676659	4676660	rs3859158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16p13.3	NR	rs3859158-A	0.814932	5E-11		0.016393	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
620	chr16	4676851	4676852	rs1684608	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16p13.3	MGRN1	rs1684608-?	NR	3E-10		0.021	[0.015-0.027] unit increase	Affymetrix [5701386] (imputed)	N
620	chr16	4676851	4676852	rs1684608	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16p13.3	NR	rs1684608-C	0.807368	2E-10		0.00901966	[0.0059-0.0121] unit increase	Affymetrix [16585854] (imputed)	N
620	chr16	4676851	4676852	rs1684608	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16p13.3	NR	rs1684608-C	0.807368	8E-9		0.00922625	[0.0057-0.0128] unit increase	Affymetrix [16585866] (imputed)	N
620	chr16	4677603	4677604	rs12921195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16p13.3		rs12921195-A	NR	1E-9		0.0207	[0.014-0.027] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
620	chr16	4677603	4677604	rs12921195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16p13.3	NR	rs12921195-A	NR	2E-9		0.0225	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
620	chr16	4677603	4677604	rs12921195	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16p13.3	MGRN1	rs12921195-C	0.860497	4E-9		0.0166503	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
620	chr16	4680072	4680073	rs1103156	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16p13.3	MGRN1	rs1103156-C	NR	3E-8		0.0198467	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
620	chr16	4708538	4708538	rs559417564	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	MGRN1	rs559417564-G	0.9679	2E-12		0.0394	[0.028-0.05] unit decrease	Affymetrix [18391927] (imputed)	N
620	chr16	4710897	4710898	rs1684621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs1684621-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
621	chr16	4754193	4754194	rs1684615	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	ANKS3	rs1684615-C	NR	3E-8		0.0170887	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
621	chr16	4755107	4755108	rs78074706	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	16p13.3	NR	rs78074706-A	NR	6E-7		0.0305587	[0.019-0.043] unit decrease	Illumina [242289]	N
621	chr16	4755107	4755108	rs78074706	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	16p13.3	NR	rs78074706-A	0.025	2E-9		0.057	unit decrease	Illumina [242289]	N
621	chr16	4768586	4768587	rs180765625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs180765625-?	NR	3E-10				NR [~ 8900000] (imputed)	N
621	chr16	4790445	4790446	rs35599524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs35599524-T	0.01568	6E-9	(HSPA4)	0.07067	NR unit increase	Illumina [1671387] (imputed)	N
621	chr16	4790445	4790446	rs35599524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs35599524-T	0.01568	1E-8	(TARS)	0.09445	NR unit increase	Illumina [1671387] (imputed)	N
621	chr16	4802385	4802386	rs3747602	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	16p13.3	ZNF500	rs3747602-G	0.368	2E-9		0.021	[0.014-0.028] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
621	chr16	4804650	4804651	rs4785974	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute dysphagia)	860 Dutch ancestry individuals	246 Dutch ancestry individuals	16p13.3		rs4785974-C	NR	6E-7		0.12845467	[0.078-0.179] decrease	Illumina [6334277] (imputed)	N
622	chr16	4860551	4860552	rs4786552	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16p13.3	GLYR1, ROGDI, SEPT12, UBN1, ZNF500	rs4786552-A	NR	1E-6	(sleep onset irregularity)	0.09223	[0.055-0.13] unit increase	Affymetrix [7141204] (imputed)	N
622	chr16	4872969	4872970	rs2075466	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p13.3	NA	rs2075466-C	0.2739	2E-12		0.0136	[0.0099-0.0173] unit increase	NR [~ 27400000] (imputed)	N
622	chr16	4872969	4872970	rs2075466	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	16p13.3	Intergenic	rs2075466-?	NR	4E-6		1.386	[NR]	Affymetrix [492217] (imputed)	N
622	chr16	4879765	4879766	rs4619406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs4619406-?	NR	9E-27				NR [~ 8900000] (imputed)	N
622	chr16	4888303	4888304	rs11076849	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.3	NR	rs11076849-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
622	chr16	4898516	4898517	rs1827983	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	16p13.3	UBN1	rs1827983-G	0.519535	3E-8		1.0244827	NR	Affymetrix [~ 9600000] (imputed)	N
622	chr16	4902037	4902038	rs9934930	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.3	UBN1	rs9934930-G	0.479214	2E-13		0.0166261	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
622	chr16	4902130	4902131	rs182312128	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16p13.3	NR	rs182312128-?	NR	3E-6		0.760465	[0.44-1.08] unit increase	NR [13958389] (imputed)	N
622	chr16	4907352	4907353	rs33959421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.3	UBN1	rs33959421-C	0.501495	3E-16		0.015744	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
622	chr16	4907352	4907353	rs33959421	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.3	UBN1	rs33959421-C	0.501499	6E-16		0.018055424	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
622	chr16	4908955	4908956	rs8060576	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p13.3	NA	rs8060576-T	0.1234	1E-9		0.0161	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
622	chr16	4918325	4918326	rs10500326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.3	NR	rs10500326-T	0.235317	1E-8		0.00570239	[0.0038-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
622	chr16	4918325	4918326	rs10500326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p13.3		rs10500326-?	NR	3E-10				NR [~ 8900000] (imputed)	N
622	chr16	4922200	4922201	rs12446456	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	NR	rs12446456-?	NR	2E-7		5.176	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
622	chr16	4925963	4925963	rs771140684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p13.3		rs771140684-CT	0.33	1E-8				NR [NR] (imputed)	N
622	chr16	4925963	4925963	rs771140684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p13.3		rs771140684-CT	0.33	3E-12		0.012	% increase	NR [NR] (imputed)	N
622	chr16	4930099	4930100	rs1876359	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs1876359-T	0.3679	3E-14		0.0128	[0.0095-0.0161] unit increase	NR [~ 27400000] (imputed)	N
622	chr16	4932928	4932929	rs1049212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.3		rs1049212-?	NR	6E-14				NR [~ 8900000] (imputed)	N
622	chr16	4933938	4933939	rs2037912	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p13.3	NR	rs2037912-G	NR	5E-6		0.012	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
622	chr16	4936090	4936091	rs733631	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	1,338 females	NA	16p13.3	PPL	rs733631-T	NR	4E-7		0.556	[0.34-0.77] unit increase	Illumina [7373492] (imputed)	N
622	chr16	4939422	4939422	rs558074929	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals		intergenic	rs558074929-AT	0.7851	6E-11		0.2665	[0.19-0.35] mmHg increase	Affymetrix [NR] (imputed)	N
622	chr16	4940022	4940023	rs2660241	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.3	PPL	rs2660241-T	0.635152	1E-8		0.00812512	[0.0053-0.0109] unit decrease	Affymetrix [12370749]	N
622	chr16	4940442	4940443	rs75403547	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16p13.3	PPL	rs75403547-C	0.930244	3E-9		0.00267586	[0.0018-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
622	chr16	4940993	4940994	rs760118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs760118-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
622	chr16	4941046	4941047	rs760117	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs760117-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
622	chr16	4942098	4942099	rs1049205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs1049205-?	NR	9E-13				NR [~ 8900000] (imputed)	N
622	chr16	4943018	4943019	rs12921187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	PPL	rs12921187-T	NR	5E-9		0.0182171	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
622	chr16	4943018	4943019	rs12921187	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16p13.3	PPL	rs12921187-T	0.43	3E-10		0.174	[0.12-0.23] unit decrease	Affymetrix [~ 9800000] (imputed)	N
622	chr16	4944255	4944256	rs77997837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p13.3		rs77997837-T	NR	4E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
622	chr16	4946028	4946029	rs2734741	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16p13.3	NR	rs2734741-C	0.1264	2E-9		0.0157	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16p13.3	PPL	rs12596053-A		5E-9		0.328	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16p13.3	PPL	rs12596053-A		2E-7	(EA)	0.318	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p13.3	PPL	rs12596053-A		2E-12		0.275	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16p13.3	PPL	rs12596053-A		5E-7	(EA)	0.2	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16p13.3	PPL	rs12596053-A		2E-7		0.188	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4946793	4946794	rs12596053	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p13.3	PPL	rs12596053-A		1E-11		0.162	unit decrease	Affymetrix [at least 2696785] (imputed)	N
622	chr16	4948935	4948936	rs12443906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16p13.3	PPL	rs12443906-C	NR	3E-8		0.0192572	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
622	chr16	4948935	4948936	rs12443906	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p13.3	NR	rs12443906-C	0.276421	3E-9		0.0136804	[0.0092-0.0182] unit increase	NR [NR]	N
622	chr16	4949814	4949815	rs11076856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs11076856-?	NR	2E-19				NR [~ 8900000] (imputed)	N
622	chr16	4955255	4955256	rs13335236	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p13.3	NR	rs13335236-?	NR	4E-9		0.124215454	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
622	chr16	4962827	4962828	rs118016381	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.3	PPL	rs118016381-A	0.0734	2E-6		0.0604	[0.036-0.085] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
622	chr16	4979668	4979669	rs75296304	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPL	rs75296304-?	NR	4E-9		2.03038	[NR] unit decrease	Affymetrix [NR] (imputed)	N
622	chr16	4979668	4979669	rs75296304	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPL	rs75296304-?	NR	3E-10	(male)	3.73152	[NR] unit decrease	Affymetrix [NR] (imputed)	N
623	chr16	4989214	4989215	rs2908660	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.3	PPL	rs2908660-T	0.5649	2E-9		0.0109	[0.0074-0.0144] unit decrease	Affymetrix [18391927] (imputed)	N
623	chr16	4994204	4994205	rs147380181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.3		rs147380181-?	NR	5E-9				NR [~ 8900000] (imputed)	N
623	chr16	5001379	5001380	rs9635542	22637743	Wei S	2012-05-27	Carcinogenesis	Genome-wide gene-environment interaction analysis for asbestos exposure in lung cancer susceptibility.	Lung cancer (asbestos exposure interaction)	1,154 European ancestry cases, 1,137 European ancestry controls	NA		PPL	rs9635542-G	0.10	4E-6				Illumina [307944]	N
623	chr16	5003073	5003074	rs34924084	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	16p13.3	PPL, SEC14L5	rs34924084-A		2E-6		0.297	unit increase	Illumina [5767231] (imputed)	N
623	chr16	5014068	5014069	rs80242938	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	16p13.3	NR	rs80242938-G	NR	4E-9		11.7	5.16-26.6	Affymetrix [at least 232408] (imputed)	N
623	chr16	5015935	5015936	rs62036174	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	16p13.3	SEC14L5	rs62036174-G	0.561	6E-6		0.018	[0.01-0.026] unit decrease	Affymetrix [~ 10446505] (imputed)	N
623	chr16	5020953	5020954	rs9927293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.3	SEC14L5	rs9927293-A	0.458924	7E-10		0.01419615	[0.0097-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr16	5020953	5020954	rs9927293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p13.3	NR	rs9927293-A	0.459029	2E-17		0.016216	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
623	chr16	5023060	5023061	rs9925477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p13.3	SEC14L5	rs9925477-G	0.466341	4E-38		0.029665176	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
623	chr16	5023060	5023061	rs9925477	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	16p13.3	SEC14L5	rs9925477-G	0.4668	3E-19		0.03309418	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr16	5024040	5024041	rs11646743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.3	SEC14L5	rs11646743-A	0.483286	4E-42		0.0310844	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
623	chr16	5024040	5024041	rs11646743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p13.3	NR	rs11646743-G	0.516828	1E-61		0.032317	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
623	chr16	5024040	5024041	rs11646743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16p13.3	SEC14L5	rs11646743-A	0.4845	2E-15		0.02899352	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr16	5024529	5024530	rs11647250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs11647250-C	0.523821	2E-61				Affymetrix, Illumina [17210439] (imputed)	N
623	chr16	5025868	5025869	rs7206373	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	16p13.3	SEC14L5	rs7206373-G	NR	1E-6		0.85	percent increase	Affymetrix [8762422] (imputed)	N
623	chr16	5034878	5034879	rs2908689	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs2908689-G	0.1359	1E-8	(IGHM)	0.08303	NR unit increase	Illumina [1671387] (imputed)	N
623	chr16	5074951	5074952	rs7110	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.3	NR	rs7110-?	NR	3E-6				Affymetrix [NR]	N
623	chr16	5075225	5075226	rs1045693	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPSE	5,365 Icelandic ancestry individuals	NA	16p13.3		rs1045693-A	0.4564	2E-37		0.241422	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
623	chr16	5075632	5075633	rs7188856	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGPA	5,361 Icelandic ancestry individuals	NA	16p13.3		rs7188856-A	0.4166	9E-32		0.221425	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
623	chr16	5079465	5079466	rs12599777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGPA	5,361 Icelandic ancestry individuals	NA	16p13.3		rs12599777-G	0.1812	7E-50		0.356026	[0.31-0.4] unit decrease	Illumina [7506463] (imputed)	N
623	chr16	5079465	5079466	rs12599777	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.3	NAGPA	rs12599777-A	0.8184375	2E-18	(NAGPA, 11208_15_3)	0.2799236	[0.22-0.34] unit increase	Illumina [> 1000000] (imputed)	N
623	chr16	5079465	5079466	rs12599777	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.3	NAGPA	rs12599777-G	0.204	1E-39	(N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase, NAGPA.11208.15.3)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
623	chr16	5080085	5080086	rs3743841	33993232	Carmona EG	2021-05-16	Rheumatology (Oxford)	Identification of a shared genetic risk locus for Kawasaki disease and IgA vasculitis by a cross-phenotype meta-analysis.	Kawasaki disease or immunoglobulin A vasculitis (pleiotropy)	402 European ancestry Kawasaki disease cases, 215 European ancestry IgAV cases, 7,538 European ancestry controls	186 East Asian ancestry Kawasaki disease cases, 600 East Asian ancestry controls, 384 IgAV European or unknown ancestry cases, 3,126 European or unknown ancestry controls	16p13.3		rs3743841-T	NR	8E-10				Illumina [5690841] (imputed)	N
623	chr16	5083482	5083483	rs2972272	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16p13.3	NR	rs2972272-?	NR	5E-6		0.007882	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
623	chr16	5096764	5096765	rs72773724	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGPA	5,361 Icelandic ancestry individuals	NA	16p13.3		rs72773724-T	0.03006	3E-7		0.276926	[0.17-0.38] unit decrease	Illumina [7506463] (imputed)	N
625	chr16	5247852	5247853	rs9924207	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16p13.3		rs9924207-A	NR	2E-8		1.0528891	[1.0341796715645-1.07193712199456]	Illumina [7827597] (imputed)	N
625	chr16	5250798	5250799	rs34025939	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16p13.3		rs34025939-T	NR	3E-6		4.6965094	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
625	chr16	5283490	5283491	rs7204436	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	16p13.3	intergenic	rs7204436-?	NR	2E-7	(multivariate)			Perlegen [1871025] (imputed)	N
625	chr16	5287274	5287275	rs60247077	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	16p13.3	RBFOX1	rs60247077-T	0.7505	8E-7		0.2752	[0.17-0.38] unit decrease	Affymetrix [8590397] (imputed)	N
625	chr16	5350476	5350477	rs2103295	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.3	ALG1	rs2103295-?	NR	9E-6	(malate)	0.19247107	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
625	chr16	5370409	5370410	rs9972783	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	16p13.3		rs9972783-?	NR	6E-6		4.54	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
625	chr16	5370409	5370410	rs9972783	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	16p13.3		rs9972783-?	NR	6E-6		4.53	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
626	chr16	5374404	5374405	rs142723691	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	16p13.3	NR	rs142723691-?	NR	9E-6		2.0241	[0.83-3.21] unit decrease	Illumina [at least 560000] (imputed)	N
626	chr16	5429576	5429577	rs476605	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	16p13.3	Intergenic	rs476605-?		4E-6		1.24471	[NR]	Affymetrix [492217] (imputed)	N
626	chr16	5456327	5456328	rs13337877	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Acidobacteriales abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.3		rs13337877-A	0.164213	5E-8		0.0198132	[0.013-0.027] unit decrease	Illumina [7980478] (imputed)	N
626	chr16	5498369	5498370	rs11646886	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RBFOX1	rs11646886-?	NR	1E-9	(male)	2.39798	[NR] unit decrease	Affymetrix [NR] (imputed)	N
627	chr16	5537597	5537598	rs12447665	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	16p13.3	NR	rs12447665-?	NR	2E-6	(AA)	1.83	[NR]	Affymetrix, Illumina [NR] (imputed)	N
627	chr16	5547577	5547578	rs1982783	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.3	RP11-420N3.2, RP11-420N3.3	rs1982783-C	0.2194	9E-6		0.0348	[0.02-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
627	chr16	5556568	5556569	rs12932752	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RBFOX1	rs12932752-?	NR	1E-8		0.756383	[NR] unit decrease	Affymetrix [NR] (imputed)	N
627	chr16	5557730	5557731	rs8046862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.3	NR	rs8046862-G	0.0789063	6E-10				Affymetrix, Illumina [24246363] (imputed)	N
627	chr16	5585851	5585852	rs870288	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16p13.3	FAM86A	rs870288-A	0.70	9E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
627	chr16	5585851	5585852	rs870288	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	16p13.3	ALG1	rs870288-?	NR	1E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
627	chr16	5588688	5588689	rs4602043	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16p13.3	RBFOX1	rs4602043-C	NR	5E-7				Illumina [8380626] (imputed)	N
627	chr16	5588688	5588689	rs4602043	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16p13.3	RBFOX1	rs4602043-C	NR	4E-9	(AA)			Illumina [8380626] (imputed)	N
627	chr16	5601754	5601755	rs11644235	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	16p13.3		rs11644235-T	0.58	2E-6		0.09	[0.051-0.129] unit increase	Illumina [5305352] (imputed)	N
627	chr16	5607069	5607070	rs112220699	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs112220699-C	0.0122	6E-9	(FAHD1)	0.09432	NR unit increase	Illumina [1671387] (imputed)	N
627	chr16	5620739	5620740	rs4341747	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p13.3	RBFOX1	rs4341747-?		2E-6				Illumina [4322238] (imputed)	N
628	chr16	5654140	5654141	rs17138199	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.3	NR	rs17138199-?	NR	2E-17				Affymetrix [NR]	N
628	chr16	5671791	5671792	rs7202041	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	16p13.3	intergenic	rs7202041-A	NR	3E-6		1.57	[1.30-1.89]	NR [7738399] (imputed)	N
628	chr16	5675197	5675198	rs4786740	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	16p13.3	NR	rs4786740-C	NR	5E-6		0.0845	[0.045-0.124] SD units decrease	NR [10700000] (imputed)	N
628	chr16	5679160	5679161	rs11639759	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	16p13.3	intergenic	rs11639759-T	NR	7E-6		1.56	[1.28-1.89]	NR [7738399] (imputed)	N
628	chr16	5694377	5694378	rs12933048	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs12933048-G	NR	4E-18		0.53	[0.41-0.65] unit increase	Illumina [97506867]	N
628	chr16	5694377	5694378	rs12933048	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs12933048-G	NR	2E-10		0.07	[0.05-0.09] unit increase	Illumina [101200590]	N
628	chr16	5694377	5694378	rs12933048	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs12933048-G	NR	6E-21		0.23	[0.19-0.27] unit increase	Illumina [94681438]	N
628	chr16	5694998	5694999	rs55813438	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	16p13.3	intergenic	rs55813438-?	NR	3E-8		0.0161773	[0.01-0.022] unit increase	Affymetrix [25921788] (imputed)	N
628	chr16	5726071	5726072	rs2191100	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (total)	255 European and unknown ancestry cases, 611 European and unknown ancestry controls	NA	16p13.3	NR	rs2191100-?	NR	7E-6		2.11	[1.52-2.92]	Illumina [> 2600000] (imputed)	N
628	chr16	5765120	5765121	rs145791081	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	16p13.3		rs145791081-?	NR	4E-8		3.31	[2.29-4.78]	Affymetrix, Illumina [29826485] (imputed)	N
629	chr16	5784291	5784292	rs6500715	32119686	Dahlin A	2020-03-02	PLoS One	Genome-wide interaction study reveals age-dependent determinants of responsiveness to inhaled corticosteroids in individuals with asthma.	Adverse response to inhaled corticosteroid treatment x age interaction in asthma	407 European ancestry cases, 376 European ancestry controls	287 European ancestry cases, 251 European ancestry controls	16p13.3	RBFOX1	rs6500715-G	NR	4E-7		2.1276596	[1.54-2.94]	Affymetrix, Illumina [8589102] (imputed)	N
629	chr16	5785322	5785323	rs112153979	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p13.3	NR	rs112153979-T	NR	5E-6		0.3899	[0.22-0.56] unit decrease	Illumina [11133794] (imputed)	N
629	chr16	5795703	5795704	rs11076960	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p13.3		rs11076960-T	0.28	9E-14		7.46	z score increase	Affymetrix [9061022] (imputed)	N
629	chr16	5808519	5808520	rs7189389	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs7189389-G	0.288	7E-13		0.0085805	[0.0062-0.0109] unit increase	NR [9732723] (imputed)	N
629	chr16	5811366	5811367	rs11076962	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p13.3	NR	rs11076962-C	0.279	1E-10		0.018299866	[0.013-0.024] unit increase	NR [~ 10000000] (imputed)	N
629	chr16	5811366	5811367	rs11076962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs11076962-T	0.7194	7E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr16	5811366	5811367	rs11076962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs11076962-T	0.7189	4E-8		0.0086	[0.0055-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
629	chr16	5811366	5811367	rs11076962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs11076962-T	0.7189	9E-10	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr16	5811366	5811367	rs11076962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.3	Intergenic	rs11076962-T	0.7153	5E-11	(MTAG)	0.0167	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
629	chr16	5811366	5811367	rs11076962	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.3	NR	rs11076962-T	NR	3E-8		5.568	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
629	chr16	5811366	5811367	rs11076962	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	NR	rs11076962-?	NR	2E-6		4.772	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
629	chr16	5819619	5819620	rs12597084	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	16p13.3	RBFOX1	rs12597084-?	NR	5E-7	(Latino)	1.43	[1.19-1.82]	Affymetrix, Illumina [NR] (imputed)	N
629	chr16	5825578	5825579	rs9923553	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16p13.3	MIR8065	rs9923553-A	0.709179	4E-10		0.0139075	[0.0095-0.0184] unit increase	NR [16516521] (imputed)	N
629	chr16	5827014	5827015	rs9936015	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.3		rs9936015-G	0.695	3E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
629	chr16	5829203	5829204	rs13332522	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or intracranial volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 24,024 European ancestry individuals	NA	16p13.3	intergenic	rs13332522-C	NR	7E-9		5.784743	NR z score increase	NR [up to 9186920] (imputed)	N
629	chr16	5840634	5840635	rs11648210	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	16p13.3	A2BP1	rs11648210-T	0.26	4E-7		0.075	[0.046-0.104] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
629	chr16	5843109	5843110	rs8045174	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	16p13.3	intergenic	rs8045174-?	NR	1E-9		0.00851266	[0.0058-0.0112] unit decrease	Affymetrix [NR] (imputed)	N
629	chr16	5894781	5894782	rs10500329	31375628	Tengvall K	2019-08-02	Proc Natl Acad Sci U S A	Molecular mimicry between Anoctamin 2 and Epstein-Barr virus nuclear antigen 1 associates with multiple sclerosis risk.	Anti-anoctamin 2 antibody levels	11,936 European ancestry individuals	NA	16p13.3	NR	rs10500329-A	NR	9E-6		0.054	[0.030-0.078] unit increase	Illumina [615763]	N
630	chr16	5919654	5919655	rs192917960	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	16p13.3	FAM86A, RBFOX1	rs192917960-T	0.032	4E-8	(AA)	1.87	[1.50-2.33]	Affymetrix [up to 15784307] (imputed)	N
630	chr16	5919654	5919655	rs192917960	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	16p13.3	FAM86A, RBFOX1	rs192917960-T	0.032	1E-8	(AA, incident)	2.14	[1.65-2.78]	Affymetrix [up to 15784307] (imputed)	N
630	chr16	5921921	5921922	rs17138779	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16p13.3		rs17138779-C	NR	7E-6		4.480657	z score increase	Affymetrix, Illumina [NR] (imputed)	N
630	chr16	5924290	5924291	rs1369924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p13.3	NR	rs1369924-C	NR	3E-21		0.0294	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
630	chr16	5957970	5957971	rs549237563	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16p13.3	BC108660, RBFOX1	rs549237563-G	0.01	2E-7	(African American)	1.63	[1.02-2.24] unit increase	Illumina [up to 13042663] (imputed)	N
630	chr16	5982388	5982389	rs74006515	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs74006515-A	0.01916	3E-9	(NAMPT)	1.342	NR unit increase	Illumina [1671387] (imputed)	N
630	chr16	5996951	5996952	rs13336140	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	16p13.3	NR	rs13336140-?	NR	5E-22		0.42	[0.32-0.52] unit decrease	Illumina [at least 830937] (imputed)	N
631	chr16	6034142	6034143	rs191076832	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.3	NR	rs191076832-?	NR	6E-6	(Native Hawaiian)	1.1977	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
631	chr16	6071364	6071365	rs4786074	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	16p13.3	RBFOX1	rs4786074-A	0.57	5E-6		1.27	[1.17-1.37]	Affymetrix, Illumina [~ 8500000] (imputed)	N
631	chr16	6077354	6077355	rs73522151	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	16p13.3	RP11-420N3.2:RBFOX1	rs73522151-C	NR	3E-7		22.1596	[14.03-30.29] unit decrease	Illumina [NR] (imputed)	N
631	chr16	6077354	6077355	rs73522151	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	16p13.3	RP11-420N3.2:RBFOX1	rs73522151-C	NR	1E-6		19.4674	[12-26.94] unit decrease	Illumina [NR] (imputed)	N
631	chr16	6090089	6090090	rs7189627	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	16p13.3	RBFOX1	rs7189627-?	NR	4E-8		0.04128	[0.027-0.056] unit increase novel	Illumina [6108953] (imputed)	N
631	chr16	6097041	6097042	rs17139233	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	16p13.3	NR	rs17139233-G	0.1784	5E-7		0.2001	[0.12-0.28] unit increase	Illumina [10677593] (imputed)	N
631	chr16	6102183	6102184	rs72772823	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	16p13.3	NR	rs72772823-?	NR	1E-6	(Simpson's diversity index)	690072.0	[412169.48-967974.52] unit decrease	Illumina [5293637] (imputed)	N
631	chr16	6104822	6104823	rs8044687	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs8044687-G	0.666	6E-8		0.00636904	[0.0041-0.0087] unit decrease	NR [9732723] (imputed)	N
631	chr16	6106259	6106260	rs17139246	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16p13.3	RBFOX1	rs17139246-C	0.38935600000000004	7E-8		1.02	[1.00-1.03]	Affymetrix [14661600] (imputed)	N
631	chr16	6108429	6108430	rs1906060	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	16p13.3	A2BP1	rs1906060-G	0.2	4E-6		0.59	[0.24-0.94] mmHg increase	Illumina [466573]	N
631	chr16	6111252	6111253	rs4786809	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.3		rs4786809-C	0.38	9E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
631	chr16	6113660	6113661	rs6500744	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	16p13.3	A2BP1	rs6500744-C	0.53	3E-6	(maternal warmth)	0.91	[NR] unit increase	Perlegen [429901]	N
631	chr16	6124205	6124206	rs1811320	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	16p13.3	NR	rs1811320-A	0.581533	1E-6		1.0764263	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
631	chr16	6128519	6128520	rs2343519	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	16p13.3	A2BP1	rs2343519-?		1E-7				Illumina [479403]	N
631	chr16	6136218	6136219	rs9934817	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	16p13.3	RBFOX1	rs9934817-G	0.019	8E-6	(GADA-first)	2.663		Illumina [131847]	N
631	chr16	6148029	6148030	rs4786816	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	RBFOX1	rs4786816-A	0.281	2E-6	(BMI )	0.03	[NR] kg/m2 increase	Illumina [899892]	N
631	chr16	6156325	6156326	rs7403856	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	RBFOX1	rs7403856-A	0.287	9E-6	(Fat mass )	0.03	[NR] kg increase	Illumina [899892]	N
631	chr16	6156325	6156326	rs7403856	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.3	RBFOX1	rs7403856-A	0.287	2E-6	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
632	chr16	6163935	6163936	rs9302817	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p13.3	RBFOX1	rs9302817-G	0.18	5E-8		0.016	[0.01-0.022] unit decrease	Illumina [6108953] (imputed)	N
632	chr16	6172772	6172773	rs4786084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p13.3		rs4786084-?	NR	6E-9				NR [~ 8900000] (imputed)	N
632	chr16	6175428	6175429	rs7189501	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.3	RBFOX1	rs7189501-C	0.423	3E-6		0.014	[0.008-0.0194] kg/m2 increase	Affymetrix, Illumina [2550021]	N
632	chr16	6197941	6197942	rs140227648	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	16p13.3	NR	rs140227648-G		8E-6		0.5926	[0.34-0.85] SD units increase	NR [10700000] (imputed)	N
632	chr16	6214223	6214224	rs17139486	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.3	NR	rs17139486-G	0.01394	7E-10	(NPC2)	0.07202	NR unit increase	Illumina [1671387] (imputed)	N
632	chr16	6224372	6224373	rs12924849	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	16p13.3	NR	rs12924849-G	0.4528	3E-6		0.1449	[0.085-0.205] unit decrease	Illumina [10677593] (imputed)	N
632	chr16	6266330	6266331	rs11077013	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 60)	19,670 European ancestry individuals	NA	16p13.3		rs11077013-?	NR	3E-8				NR [9705931] (imputed)	N
632	chr16	6283320	6283321	rs12930199	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	1,992 European ancestry female cases, 3,095 European ancestry female controls	1,399 European ancestry female cases, 1,575 European ancestry female controls	16p13.3	RBFOX1	rs12930199-?	NR	5E-6		1.18	[1.10-1.27]	Illumina [~ 6000000] (imputed)	N
632	chr16	6284565	6284566	rs8045744	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	16p13.3	RBFOX1	rs8045744-T	NR	4E-7		0.649154	[0.4-0.9] unit decrease	NR [9955952] (imputed)	N
632	chr16	6284565	6284566	rs8045744	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	25,501 European ancestry women	NA	16p13.3	RBFOX1	rs8045744-T	NR	9E-8		0.988101	[0.63-1.35] unit decrease	NR [9955952] (imputed)	N
633	chr16	6310644	6310645	rs8063603	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	16p13.3	NR	rs8063603-G	NR	5E-11		1.0309278		NR [NR] (imputed)	N
633	chr16	6310644	6310645	rs8063603	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and major depressive disorder (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 111,902 major depression cases, 312,113 controls	NA	16p13.3		rs8063603-A	0.673	7E-6		0.041	[0.023-0.059] unit decrease	Illumina [NR] (imputed)	N
633	chr16	6310644	6310645	rs8063603	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	16p13.3	RBFOX1	rs8063603-G	0.35	7E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
633	chr16	6310644	6310645	rs8063603	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	16p13.3	NR	rs8063603-G	0.3403	7E-10		0.0161	[0.011-0.021] unit increase	Illumina [NR] (imputed)	N
633	chr16	6310644	6310645	rs8063603	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	16p13.3	RBFOX1	rs8063603-A	0.66465	7E-6		4.497	z score decrease	Illumina [18485882] (imputed)	N
633	chr16	6315879	6315880	rs7193263	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	16p13.3		rs7193263-?	NR	2E-11		0.0192	unit decrease	NR [NR]	N
633	chr16	6315879	6315880	rs7193263	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	16p13.3	NR	rs7193263-?		5E-13				NR [520857]	N
633	chr16	6315879	6315880	rs7193263	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	16p13.3	NR	rs7193263-?		9E-11				NR [11140414]	N
633	chr16	6315879	6315880	rs7193263	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16p13.3	RBFOX1	rs7193263-?		6E-11				NR [6786993] (imputed)	N
633	chr16	6315879	6315880	rs7193263	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	16p13.3	NR	rs7193263-G	0.3321	4E-19		1.0204082	[1.02-1.03]	NR [8098588] (imputed)	N
633	chr16	6315879	6315880	rs7193263	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	16p13.3	NR	rs7193263-A	NR	9E-11		6.478	z score decrease	Affymetrix [10847151] (imputed)	N
633	chr16	6315879	6315880	rs7193263	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	16p13.3	NR	rs7193263-G	0.3391	4E-11		0.0153	[0.011-0.02] unit increase	Illumina [NR] (imputed)	N
633	chr16	6336911	6336912	rs716508	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	16p13.3	RP11, 420N3.2, RBFOX1	rs716508-C	0.335	4E-10		0.02213966	[0.014-0.03] unit increase	NR [9417325] (imputed)	N
633	chr16	6336911	6336912	rs716508	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.3	NR	rs716508-T	0.682353374621214	1E-15		0.007879294	[0.0059-0.0098] unit decrease	NR [NR]	N
633	chr16	6336911	6336912	rs716508	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16p13.3	NR	rs716508-T	0.682353374621214	6E-15		0.009630196	[0.0072-0.0121] unit decrease	NR [NR]	N
633	chr16	6336911	6336912	rs716508	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.3	NR	rs716508-T	0.682353374621214	2E-15		0.0125026	[0.0094-0.0156] unit decrease	NR [NR]	N
633	chr16	6336911	6336912	rs716508	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16p13.3	NR	rs716508-T	0.682353374621214	2E-13		0.010252982	[0.0075-0.013] unit decrease	NR [NR]	N
633	chr16	6336911	6336912	rs716508	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.3	NR	rs716508-T	0.682353374621214	2E-15		0.007992385	[0.006-0.01] unit decrease	NR [NR]	N
633	chr16	6336911	6336912	rs716508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16p13.3		rs716508-?	NR	2E-8				NR [~ 8900000] (imputed)	N
633	chr16	6336911	6336912	rs716508	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	16p13.3	NR	rs716508-T	0.6686	6E-9		0.0115	[0.0076-0.0154] unit increase	Illumina [NR] (imputed)	N
633	chr16	6342640	6342641	rs6500768	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	16p13.3	NR	rs6500768-?		4E-8				NR [520857]	N
633	chr16	6342640	6342641	rs6500768	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.3	NR	rs6500768-T	0.311	2E-7		0.0149	[0.0093-0.0205] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
633	chr16	6400354	6400355	rs7191427	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.3	NR	rs7191427-T	0.252701234258056	4E-9		0.006227955	[0.0042-0.0083] unit increase	NR [NR]	N
633	chr16	6400354	6400355	rs7191427	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16p13.3	NR	rs7191427-T	0.252701234258056	4E-9		0.00766451	[0.0051-0.0102] unit increase	NR [NR]	N
633	chr16	6400354	6400355	rs7191427	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.3	NR	rs7191427-T	0.252701234258056	3E-9		0.009988291	[0.0067-0.0133] unit increase	NR [NR]	N
633	chr16	6400354	6400355	rs7191427	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16p13.3	NR	rs7191427-T	0.252701234258056	1E-8		0.008168689	[0.0053-0.011] unit increase	NR [NR]	N
633	chr16	6400354	6400355	rs7191427	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.3	NR	rs7191427-T	0.252701234258056	3E-9		0.006378761	[0.0043-0.0085] unit increase	NR [NR]	N
633	chr16	6412802	6412803	rs2534752	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.3	FAM86A	rs2534752-?	NR	8E-6	(TAG 58:10)	0.21931049	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
634	chr16	6441207	6441208	rs9941157	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	16p13.3	NR	rs9941157-G	0.439	4E-6	(Bray-Curtis metric)	4.4545593	NR z-score increase	Illumina [5293637] (imputed)	N
634	chr16	6441210	6441211	rs147091470	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16p13.3		rs147091470-?	NR	5E-7		1.1330339	[1.07904641369778-1.18972255293582]	Illumina [up to 7827597] (imputed)	N
634	chr16	6499119	6499120	rs77684884	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	16p13.3		rs77684884-G	0.1878	6E-10		0.0198	[0.014-0.026] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
634	chr16	6504023	6504024	rs75638798	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	16p13.3	RBFOX1	rs75638798-C	0.01	5E-9	(EA)	0.7185	[0.48-0.95] unit decrease	Illumina [~ 9000000] (imputed)	N
634	chr16	6504023	6504024	rs75638798	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	16p13.3	RBFOX1	rs75638798-C	0.01	2E-9		0.7178	[0.49-0.95] unit decrease	Illumina [~ 9000000] (imputed)	N
634	chr16	6518560	6518561	rs75486493	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	16p13.3	NR	rs75486493-G	0.04	8E-6		1.22	[1.12-1.32]	Illumina [8468885] (imputed)	N
634	chr16	6520495	6520496	rs10492829	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	16p13.3		rs10492829-?	NR	9E-6		0.4670772	[0.26-0.67] unit increase	Illumina [9901720] (imputed)	N
634	chr16	6527347	6527348	rs7498702	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Extraversion	122,886 European ancestry individuals	46,621 European ancestry individuals	16p13.3	RBFOX1	rs7498702-C	0.29	2E-6		0.026	[0.014-0.038] unit decrease GPC-2 Discovery cohort	Affymetrix, Illumina [6343667] (imputed)	N
634	chr16	6540340	6540341	rs75171838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.3		rs75171838-C	NR	7E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
634	chr16	6550399	6550400	rs3095508	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	16p13.3	NR	rs3095508-C	NR	3E-8		0.702	unit increase	Affymetrix [14661600] (imputed)	N
635	chr16	6554252	6554253	rs813913	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.3	NR	rs813913-A	0.571	2E-9		0.0065105	[0.0044-0.0086] unit decrease	NR [9732723] (imputed)	N
635	chr16	6560429	6560430	rs12933772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p13.3		rs12933772-?	NR	2E-8				NR [~ 8900000] (imputed)	N
635	chr16	6581745	6581746	rs7206841	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.3	Intergenic	rs7206841-G	0.6322	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
635	chr16	6603020	6603021	rs8044082	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	16p13.3	NR	rs8044082-A	NR	8E-7		0.01031	[0.0062-0.0144] unit increase	Illumina [~ 540852]	N
635	chr16	6603020	6603021	rs8044082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.3	Intergenic	rs8044082-T	0.4039	9E-9	(MTAG)	0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
635	chr16	6603020	6603021	rs8044082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs8044082-T	0.4032	4E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
635	chr16	6614412	6614413	rs2192643	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	16p13.3		rs2192643-G	0.4	9E-6				Illumina [6724284] (imputed)	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	3E-8				NR [NR]	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	5E-8				NR [NR]	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	4E-8				NR [NR]	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	3E-8				NR [NR]	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	5E-8				NR [NR]	N
635	chr16	6654354	6654355	rs75989791	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs75989791-?	NR	5E-8				NR [NR]	N
635	chr16	6675140	6675141	rs112252907	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	16p13.3	RBFOX1	rs112252907-T	NR	4E-6		0.4268	[0.24-0.61] unit increase	Illumina [9290362] (imputed)	N
636	chr16	6695602	6695603	rs115110965	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	16p13.3	NR	rs115110965-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
636	chr16	6699260	6699261	rs11643447	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16p13.3	A2BP1	rs11643447-T	0.05	2E-7	(men)			Affymetrix, Illumina [2500000] (imputed)	N
636	chr16	6704748	6704749	rs2058527	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.3	NA	rs2058527-T	0.2715	2E-9		0.0115	[0.0078-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
636	chr16	6713418	6713419	rs8053333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs8053333-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
636	chr16	6717756	6717757	rs8054347	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.3	NR	rs8054347-A	NR	1E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
636	chr16	6737493	6737494	rs72764914	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16p13.3	Intergenic	rs72764914-?		3E-7		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
636	chr16	6737493	6737494	rs72764914	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16p13.3	Intergenic	rs72764914-?		2E-7		1.87	[1.47-2.37]	Illumina [7645193] (imputed)	N
636	chr16	6753238	6753239	rs11642387	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.3	RBFOX1	rs11642387-A	0.899139	2E-8		0.0128653	[0.0084-0.0174] unit increase	Affymetrix [12370749]	N
636	chr16	6753238	6753239	rs11642387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.3	NR	rs11642387-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
636	chr16	6753238	6753239	rs11642387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.3		rs11642387-?	NR	2E-10				NR [~ 8900000] (imputed)	N
636	chr16	6754527	6754528	rs8061082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.3	Intergenic	rs8061082-T	0.2538	2E-10	(MTAG)	0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
636	chr16	6754527	6754528	rs8061082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.3	Intergenic	rs8061082-C	0.7462	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
636	chr16	6754527	6754528	rs8061082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs8061082-T	0.2539	3E-9	(MTAG)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
636	chr16	6766191	6766192	rs17668891	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.3	FAM86A	rs17668891-?	NR	5E-6	(SM 24:1)	0.16234873	[0.093-0.232] unit increase	Affymetrix [at least 2500000] (imputed)	N
637	chr16	6817374	6817375	rs6500818	22001756	Khor CC	2011-10-16	Nat Genet	Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1.	Dengue shock syndrome	2,008 Vietnamese ancestry child cases, 2,018 Vietnamese ancestry child controls	1,737 Vietnamese ancestry child cases, 2,934 Vietnamese ancestry child controls	16p13.3	NR	rs6500818-?	NR	2E-7		1.31	[NR]	Illumina [481342]	N
637	chr16	6877796	6877797	rs144711998	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	4,097 individuals	NA	16p13.3		rs144711998-T	NR	4E-6		0.208674	[0.12-0.3] unit increase	Affymetrix [10900000] (imputed)	N
637	chr16	6877796	6877797	rs144711998	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	Progesterone levels	1,877 women	NA	16p13.3		rs144711998-T	NR	3E-8		0.524887	[0.34-0.71] unit increase	Affymetrix [10900000] (imputed)	N
637	chr16	6889674	6889675	rs35450617	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p13.3	RBFOX1	rs35450617-T	0.7	2E-9		0.1609	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
637	chr16	6896127	6896128	rs11645781	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	16p13.3	A2BP1	rs11645781-G	0.696	2E-7				Affymetrix, Illumina [2516789] (imputed)	N
637	chr16	6900546	6900547	rs4786125	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	16p13.3	intergenic	rs4786125-A	0.711	7E-6	(EA)	0.015542	[0.0088-0.0223] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
637	chr16	6901512	6901513	rs4129044	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	16p13.3	RBFOX1	rs4129044-?	NR	9E-6				Illumina [7401356] (imputed)	N
637	chr16	6903159	6903160	rs56081887	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	16p13.3	NR	rs56081887-G		3E-9		0.6119	[0.41-0.81] unit increase	Illumina [NR] (imputed)	N
637	chr16	6910384	6910385	rs12921846	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16p13.3	A2BP1	rs12921846-A	0.40	9E-6				Perlegen [378332]	N
637	chr16	6926666	6926667	rs12925846	31852448	Chiang KM	2019-12-18	BMC Genet	Genome-wide association study of morbid obesity in Han Chinese.	Obesity (extreme)	575 Han Chinese ancestry cases, 1,707 Han Chinese ancestry controls	535 Han Chinese ancestry cases, 9,145 Han Chinese ancestry controls	16p13.3	RBFOX1	rs12925846-?		6E-6		1.2820514	[1.27-1.29]	Affymetrix [562523]	N
638	chr16	6964692	6964693	rs7203269	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	16p13.3	RBFOX1	rs7203269-C	0.2114	3E-6		0.0094	[0.0055-0.0133] unit increase	Affymetrix [~ 7740000] (imputed)	N
638	chr16	7040147	7040148	rs188803409	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	16p13.3		rs188803409-A	NR	3E-7	(GLM)	7.2424	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
639	chr16	7090937	7090937	rs368977885	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	16p13.3	RBFOX1	rs368977885-?	NR	3E-21		1.1074197	[1.08-1.13]	Illumina [13729857] (imputed)	N
639	chr16	7113133	7113134	rs78165933	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	16p13.3	NR	rs78165933-?	NR	8E-6		0.207	[0.11-0.3] unit decrease	Illumina [at least 560000] (imputed)	N
639	chr16	7130044	7130045	rs7194062	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs7194062-G	NR	1E-9		0.42	[0.28-0.56] unit decrease	Illumina [97506867]	N
639	chr16	7130044	7130045	rs7194062	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16p13.3		rs7194062-G	NR	1E-9		0.17	[0.11-0.23] unit decrease	Illumina [94681438]	N
639	chr16	7132199	7132200	rs12709173	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16p13.3	NR	rs12709173-C	0.745009	1E-8		0.0437858	[0.028-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
639	chr16	7139172	7139173	rs11866781	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	16p13.3	A2BP1	rs11866781-?	0.58	5E-6	(Age 20-81 years)	1.3	[1.16-1.45]	Affymetrix, Illumina [up to 17585496] (imputed)	N
639	chr16	7141262	7141263	rs75885813	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16p13.3	Intergenic	rs75885813-A	NR	4E-10	(within families)	6.258	unit decrease	Affymetrix [up to 15107142] (imputed)	N
639	chr16	7143498	7143499	rs12103267	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	16p13.3	NR	rs12103267-?		3E-6				Illumina [892589]	N
639	chr16	7164218	7164219	rs1478693	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	16p13.3	intergenic	rs1478693-G	0.27	4E-6		8.82	[5.10-12.54] unit increase	Illumina [2380486] (imputed)	N
639	chr16	7170571	7170572	rs192042086	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	16p13.3	NR	rs192042086-?	NR	9E-7		0.2749	[0.17-0.38] unit increase	Illumina [at least 560000] (imputed)	N
639	chr16	7199459	7199460	rs12447219	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	16p13.3	RBFOX1	rs12447219-?	NR	5E-6			NR	Illumina [up to 317503]	N
640	chr16	7227121	7227122	rs9302841	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	16p13.3	A2BP1	rs9302841-?	NR	2E-6	(AIMS)			Affymetrix [492000]	N
640	chr16	7229578	7229579	rs9934041	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	RBFOX1	rs9934041-T	NR	9E-10		6.125	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
640	chr16	7249471	7249472	rs12709186	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs12709186-A	0.3236	1E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
640	chr16	7249471	7249472	rs12709186	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs12709186-A	0.3236	3E-11	(MTAG)	0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
640	chr16	7249471	7249472	rs12709186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	RBFOX1	rs12709186-A	NR	4E-8		5.47	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
640	chr16	7251755	7251756	rs2346605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.3	Intergenic	rs2346605-C	0.333	1E-8	(MTAG)	0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
640	chr16	7253285	7253286	rs12325273	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16p13.3	NR	rs12325273-G	0.335984	4E-8		0.03641445	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
640	chr16	7253285	7253286	rs12325273	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16p13.3	Intergenic	rs12325273-C	0.3369	4E-8		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
640	chr16	7265069	7265070	rs11865256	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	RBFOX1	rs11865256-T	NR	1E-8		5.678	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
640	chr16	7289569	7289570	rs9930139	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	16p13.3	NR	rs9930139-A	NR	1E-8		0.01351	[0.0089-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
640	chr16	7301520	7301521	rs4426365	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16p13.3	RBFOX1	rs4426365-A	0.3678	2E-6		0.005	[0.0028-0.0072] unit increase	Affymetrix [~ 7740000] (imputed)	N
640	chr16	7309046	7309047	rs79266634	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	16p13.3	RBFOX1	rs79266634-C	0.0926	3E-9		5.932	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
640	chr16	7309990	7309991	rs17143122	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16p13.3	NR	rs17143122-?	NR	2E-7	(AA)	807.55	[796.4-818.7]	Illumina [905956]	N
640	chr16	7321908	7321909	rs9936075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	16p13.3	NR	rs9936075-G		2E-6		0.0782	[0.046-0.11] SD units increase	NR [10700000] (imputed)	N
640	chr16	7330127	7330128	rs4494563	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.3		rs4494563-C	0.817	2E-11		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
640	chr16	7337939	7337940	rs7195044	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (cerebrospinal fluid)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	16p13.3	RBFOX1	rs7195044-C	NR	3E-7		9.54	percent increase	Affymetrix [8762422] (imputed)	N
641	chr16	7348160	7348161	rs7206303	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	16p13.3	TMEM114	rs7206303-A	0.2375	2E-8		0.014760507	[0.0096-0.0199] unit increase	Affymetrix [11514936] (imputed)	N
641	chr16	7351002	7351003	rs182429520	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	16p13.3	NR	rs182429520-?	NR	9E-6		2.5453	[1.01-4.08] unit decrease	Illumina [at least 560000] (imputed)	N
641	chr16	7360131	7360132	rs4479249	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16p13.3	RBFOX1	rs4479249-T	0.177	5E-12		0.0107	[0.0078-0.0136] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
641	chr16	7371457	7371458	rs6500948	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16p13.3	TMEM114	rs6500948-A	0.8211	1E-8		0.014369997	[0.0094-0.0193] unit decrease	Illumina [9339358] (imputed)	N
641	chr16	7373469	7373470	rs13337052	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.3	NR	rs13337052-?	NR	5E-20				Affymetrix [NR]	N
641	chr16	7407270	7407271	rs12444565	30596066	Kong LL	2018-11-01	Ann Transl Med	Genome-wide association study identifies RBFOX1 locus influencing brain glucose metabolism.	Brain glucose metabolism (fluorodeoxyglucose uptake)	37 European ancestry Alzheimer's disease cases, 126 European ancestry individuals with mild cognitive impairment, 59 European ancestry controls	NA	16p13.3	RBFOX1	rs12444565-?	NR	6E-8				Illumina [319792]	N
641	chr16	7408635	7408636	rs57220573	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	16p13.3	RBFOX1	rs57220573-C	0.011	2E-6		4.36	[2.37-8.01]	Illumina [3905175] (imputed)	N
641	chr16	7415551	7415552	rs4787008	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	16p13.3	LOC100131413, LOC100131080, A2BP1	rs4787008-G	0.17	6E-7		1.47	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
641	chr16	7421352	7421353	rs4306527	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16p13.3	NR	rs4306527-G		4E-13		0.11	[0.09-0.13] unit increase	NR [NR]	N
641	chr16	7433109	7433110	rs4627375	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	16p13.3	NR	rs4627375-G	0.44	2E-6		0.93	[0.89-0.97]	Illumina [8468885] (imputed)	N
641	chr16	7445793	7445794	rs4511556	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	16p13.3	RBFOX1	rs4511556-?	NR	7E-6				Affymetrix, Illumina [1184972]	N
641	chr16	7456864	7456865	rs8043821	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.3	NR	rs8043821-?	NR	1E-8				Affymetrix [NR]	N
641	chr16	7458134	7458135	rs4581716	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16p13.3	NR	rs4581716-?	NR	2E-7		0.142948	[0.089-0.197] unit increase	NR [13958389] (imputed)	N
641	chr16	7458134	7458135	rs4581716	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Myopia	3,923 European ancestry cases, 11,696 European ancestry controls	1,410 European ancestry cases, 2,921 cases, 3,171 European ancestry controls, 998 controls	16p13.3	RBFOX1	rs4581716-?		2E-6				Affymetrix, Illumina [up to 3397980] (imputed)	N
641	chr16	7459346	7459347	rs10500355	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		RBFOX1	rs10500355-A	NR	6E-26		1.04	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
641	chr16	7459346	7459347	rs10500355	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA		RBFOX1	rs10500355-A	0.3543	6E-43		13.732	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
641	chr16	7459346	7459347	rs10500355	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA		RBFOX1	rs10500355-?	NR	2E-63		1.1350738	[1.12-1.15]	Illumina [13762925] (imputed)	N
641	chr16	7459346	7459347	rs10500355	23474815	Stambolian D	2013-03-07	Hum Mol Genet	Meta-analysis of genome-wide association studies in five cohorts reveals common variants in RBFOX1, a regulator of tissue-specific splicing, associated with refractive error.	Refractive error	6,597 European ancestry and Erasmus Rucphen individuals, 683 Sardinian inidividuals	19,763 European ancestry individuals		RBFOX1	rs10500355-?	.3721	4E-9		0.111	[0.074-0.147] unit decrease	Affymetrix, Illumina [2093862] (imputed)	N
641	chr16	7459682	7459683	rs17648524	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16p13.3	RBFOX1	rs17648524-?		1E-180				Affymetrix, Illumina [NR] (imputed)	N
641	chr16	7459682	7459683	rs17648524	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16p13.3	NR	rs17648524-C	0.3664	3E-42		0.0986	[0.084-0.113] unit decrease	Illumina [~ 10600000] (imputed)	N
641	chr16	7459682	7459683	rs17648524	25233373	Simpson CL	2014-09-18	PLoS One	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.	Hyperopia	7,068 European ancestry cases, 6,844 European ancestry controls	1,554 European ancestry cases, 892 cases, 1,654 European ancestry controls, 2,921 controls	16p13.3	RBFOX1	rs17648524-?		5E-7				Affymetrix, Illumina [up to 3397980] (imputed)	N
641	chr16	7459682	7459683	rs17648524	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	16p13.3	RBFOX1	rs17648524-C	0.36	6E-10		0.118	[0.081-0.155] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
641	chr16	7459790	7459790	rs58514548	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	16p13.3		rs58514548-CT	0.36679	4E-7		0.03605	[0.022-0.05] unit decrease	Affymetrix [15580782] (imputed)	N
641	chr16	7460114	7460115	rs12051285	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	16p13.3	RBFOX1	rs12051285-G	NR	5E-6		1.057	[1.034-1.081]	NR [5919636] (imputed)	N
641	chr16	7460425	7460426	rs7188859	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16p13.3	NR	rs7188859-T		1E-52		0.17	[0.15-0.19] unit increase	NR [NR]	N
641	chr16	7460425	7460426	rs7188859	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	16p13.3	RBFOX1	rs7188859-T	0.63	8E-12		0.01	unit increase	Affymetrix [8928767] (imputed)	N
641	chr16	7460698	7460699	rs7184522	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	16p13.3	RBFOX1	rs7184522-G	NR	2E-17	(male)	1.0477	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
641	chr16	7460698	7460699	rs7184522	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	16p13.3	NR	rs7184522-G	NR	7E-13		1.053		Affymetrix [9869154] (imputed)	N
641	chr16	7460698	7460699	rs7184522	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	16p13.3	RBFOX1	rs7184522-?	0.359	5E-12		1.2093332	[1.14-1.28]	Affymetrix [NR] (imputed)	N
641	chr16	7462044	7462045	rs4332760	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	16p13.3	NR	rs4332760-C	0.6411	2E-10		0.0938	[0.065-0.123] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
641	chr16	7462044	7462045	rs4332760	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	16p13.3	NR	rs4332760-C	0.6238	3E-9	(EA)	0.0912	[0.061-0.121] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
641	chr16	7462714	7462715	rs8055041	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	16p13.3	NR	rs8055041-C	0.52	1E-9		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
641	chr16	7463375	7463376	rs6500960	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16p13.3	NR	rs6500960-G		7E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
641	chr16	7467906	7467907	rs62015704	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	16p13.3	NR	rs62015704-G	NR	2E-6		0.1082	[0.053-0.164] SD units decrease	NR [10700000] (imputed)	N
641	chr16	7468351	7468352	rs7194617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.3		rs7194617-?	NR	5E-10				NR [~ 8900000] (imputed)	N
642	chr16	7492976	7492977	rs1558339	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.3	C16orf68	rs1558339-?	NR	9E-6	(ornithine)	0.25363964	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
642	chr16	7501808	7501809	rs146952371	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	16p13.3		rs146952371-T	NR	2E-7		2.53		Illumina [7574753] (imputed)	N
642	chr16	7504853	7504854	rs9924951	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	16p13.3	A2BP1	rs9924951-?	0.41	5E-7	(PC)			Affymetrix [187454]	N
642	chr16	7533020	7533021	rs4787028	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs4787028-T	0.6622	8E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
642	chr16	7533020	7533021	rs4787028	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs4787028-T	0.6622	3E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
643	chr16	7602980	7602981	rs112896149	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	16p13.3	NR	rs112896149-G	0.8	5E-6		1.87	[1.43-2.45]	Illumina [17125421] (imputed)	N
643	chr16	7612507	7612508	rs7191941	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	16p13.3	RBFOX1	rs7191941-C	0.128338	6E-6		0.602451	[0.34-0.86] unit increase	Affymetrix, Illumina [NR] (imputed)	N
643	chr16	7657372	7657373	rs1507010	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16p13.3	NR	rs1507010-A	0.491054	2E-9		0.03771082	[0.025-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
643	chr16	7657372	7657373	rs1507010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16p13.3	Intergenic	rs1507010-A	0.491	2E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
643	chr16	7657431	7657432	rs4616299	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	16p13.3	RBFOX1	rs4616299-G	0.4	1E-8		0.0063466	[0.0042-0.0085] unit decrease	NR [16367095] (imputed)	N
643	chr16	7659748	7659749	rs8053004	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16p13.3	NR	rs8053004-T	0.301759077986242	5E-9		0.0076265205	[0.0051-0.0102] unit decrease	NR [NR]	N
643	chr16	7659748	7659749	rs8053004	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.3	NR	rs8053004-T	NR	1E-9		6.116	z score decrease	Affymetrix [10847151] (imputed)	N
643	chr16	7662488	7662489	rs11640647	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	16p13.3	NR	rs11640647-T	0.602	8E-6		0.01627837	[0.0091-0.0234] unit increase	Affymetrix [up to 6544775] (imputed)	N
643	chr16	7662706	7662707	rs12923795	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	16p13.3	NR	rs12923795-A	NR	6E-10		0.01476	[0.01-0.019] unit decrease	Affymetrix [10847151] (imputed)	N
643	chr16	7663289	7663290	rs7195278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.3		rs7195278-?	NR	2E-12				NR [~ 8900000] (imputed)	N
643	chr16	7664874	7664875	rs9929993	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16p13.3		rs9929993-?	NR	2E-8				NR [NR]	N
643	chr16	7664874	7664875	rs9929993	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.3		rs9929993-T	0.361	3E-12		0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
643	chr16	7665169	7665170	rs34518736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.3	Intergenic	rs34518736-C	0.4538	9E-14	(MTAG)	0.0098	[0.0073-0.0123] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
643	chr16	7665169	7665170	rs34518736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.3	Intergenic	rs34518736-C	0.4514	1E-12	(MTAG)	0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
643	chr16	7665556	7665557	rs3785238	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p13.3	RBFOX1	rs3785238-A	NR	4E-9		0.017861888	[0.012-0.024] unit decrease	Affymetrix [NR]	N
643	chr16	7666087	7666088	rs11646221	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.3	NR	rs11646221-T	NR	2E-10		6.399	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
643	chr16	7666401	7666402	rs7198928	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	16p13.3	NR	rs7198928-T	0.6159	4E-23		1.022	[1.018-1.027]	NR [8098588] (imputed)	N
643	chr16	7666401	7666402	rs7198928	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	16p13.3	RBFOX1	rs7198928-T	0.62	1E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
643	chr16	7666663	7666664	rs55997507	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	16p13.3	NR	rs55997507-G	NR	3E-10		0.01558	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
643	chr16	7666663	7666664	rs55997507	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	16p13.3	RBFOX1	rs55997507-C	0.396351	1E-10		6.437	unit increase	NR [10847151] (imputed)	N
643	chr16	7666841	7666842	rs11077203	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	16p13.3	intergenic	rs11077203-A	0.60965	8E-11		6.504	z score increase	Illumina [18485882] (imputed)	N
643	chr16	7666970	7666971	rs9935836	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.3	NR	rs9935836-A	NR	3E-8		5.528	z score increase	Affymetrix [10847151] (imputed)	N
643	chr16	7667130	7667131	rs3785237	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	16p13.3	NR	rs3785237-G	NR	1E-11		0.01594	NR unit decrease	NR [7259579]	N
643	chr16	7667130	7667131	rs3785237	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.3	NR	rs3785237-C	NR	4E-14		7.574	z score increase	Affymetrix [10847151] (imputed)	N
643	chr16	7667130	7667131	rs3785237	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	16p13.3	RBFOX1	rs3785237-C	0.496839	7E-13		7.18	z score increase	NR [10847151] (imputed)	N
643	chr16	7667186	7667187	rs11077204	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p13.3	RBFOX1	rs11077204-C	NR	5E-8		0.018286368	[0.012-0.025] unit decrease	Affymetrix [NR]	N
643	chr16	7667198	7667199	rs3785236	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	16p13.3	RBFOX1	rs3785236-C	0.754871	9E-7		0.0365	[0.023-0.05] unit increase	Illumina [1220000] (imputed)	N
643	chr16	7667227	7667228	rs3785235	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	16p13.3	RBFOX1	rs3785235-A	0.3757	2E-9		0.014009373	[0.0088-0.0192] unit decrease	NR [9417325] (imputed)	N
643	chr16	7667331	7667332	rs11077206	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	16p13.3	NR	rs11077206-?		4E-9				NR [520857]	N
643	chr16	7667331	7667332	rs11077206	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	16p13.3	NR	rs11077206-C	NR	5E-10		1.03	[1.02-1.04]	NR [NR] (imputed)	N
643	chr16	7667391	7667392	rs3785234	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.3	NR	rs3785234-T	0.62081044399491	2E-14		0.0072290096	[0.0054-0.0091] unit increase	NR [NR]	N
643	chr16	7667391	7667392	rs3785234	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	16p13.3	RBFOX1	rs3785234-T	0.624	2E-8		1.035	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
643	chr16	7667391	7667392	rs3785234	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	16p13.3	NR	rs3785234-T	0.6131	6E-9		0.0127	[0.0084-0.017] unit increase	Illumina [NR] (imputed)	N
643	chr16	7667391	7667392	rs3785234	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	16p13.3	NR	rs3785234-T	0.6131	5E-9		0.0143	[0.0096-0.019] unit increase	Illumina [NR] (imputed)	N
643	chr16	7667537	7667538	rs3785232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16p13.3		rs3785232-?	NR	5E-12				NR [~ 8900000] (imputed)	N
643	chr16	7667537	7667538	rs3785232	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.3	NR	rs3785232-T	NR	8E-15		7.763	z score increase	Affymetrix [10847151] (imputed)	N
643	chr16	7667796	7667797	rs2191130	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	16p13.3	NR	rs2191130-?		1E-9				NR [11140414]	N
643	chr16	7667796	7667797	rs2191130	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.3	NR	rs2191130-T	0.682655420953353	3E-13		0.011671352	[0.0085-0.0148] unit increase	NR [NR]	N
643	chr16	7667796	7667797	rs2191130	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16p13.3	NR	rs2191130-T	0.682655420953353	2E-9		0.009343457	[0.0063-0.0124] unit increase	NR [NR]	N
643	chr16	7667796	7667797	rs2191130	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.3	NR	rs2191130-T	0.682655420953353	3E-13		0.007441718	[0.0054-0.0094] unit increase	NR [NR]	N
643	chr16	7667796	7667797	rs2191130	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	16p13.3	NR	rs2191130-T	NR	1E-9		6.099	z score increase	Affymetrix [10847151] (imputed)	N
643	chr16	7667796	7667797	rs2191130	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	16p13.3	RBFOX1	rs2191130-T	0.321718	3E-9		5.95	z score increase	NR [10847151] (imputed)	N
643	chr16	7668479	7668480	rs11077207	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p13.3	RBFOX1	rs11077207-C	NR	3E-10		0.018427402	[0.013-0.024] unit decrease	Affymetrix [NR]	N
643	chr16	7670998	7670999	rs3785229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.3	Intergenic	rs3785229-A	0.468	2E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
643	chr16	7673254	7673255	rs7186834	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.3	RBFOX1	rs7186834-T	NR	5E-9		5.859	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
643	chr16	7709969	7709970	rs6501006	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	16p13.3	RBFOX1	rs6501006-G	NR	2E-6		1.19247	[1.10881-1.28243]	Illumina [5842835] (imputed)	N
644	chr16	7743746	7743747	rs917543	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	16p13.3	Intergenic	rs917543-?		8E-6		1.2420816	[NR]	Affymetrix [492217] (imputed)	N
644	chr16	7744179	7744180	rs12447542	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.3	NR	rs12447542-A	NR	7E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
644	chr16	7753703	7753704	rs12444931	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	16p13.3	NR	rs12444931-?	NR	5E-6		1.2244	[NR]	Affymetrix [722112]	N
644	chr16	7756048	7756049	rs59325236	31301374	Noguchi E	2019-07-10	J Allergy Clin Immunol	HLA-DQ and RBFOX1 as susceptibility genes for an outbreak of hydrolyzed wheat allergy.	Hydrolysed wheat protein allergy	452 Japanese ancestry cases, 2,700 Japaneses ancestry controls	45 Japanese ancestry cases, 326 Japaneses ancestry controls	16p13.3	RBFOX1	rs59325236-A	0.024	1E-8		2.57	[1.85-3.55]	Illumina [6575663] (imputed)	N
644	chr16	7761735	7761736	rs72778533	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16p13.3	NR	rs72778533-?	NR	5E-7		0.0086095	[0.0053-0.012] unit increase	Affymetrix [805426] (imputed)	N
644	chr16	7768620	7768621	rs5020196	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	16p13.3		rs5020196-C	NR	2E-6	(GLM)	2.5638	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
644	chr16	7768743	7768744	rs9930542	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	16p13.3		rs9930542-?	NR	6E-6	(MLM)	0.3371169	[0.19-0.48] unit increase	Illumina [~ 9000000] (imputed)	N
644	chr16	7806372	7806373	rs12445359	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	16p13.3	NR	rs12445359-?	NR	6E-6		0.0741	[0.042-0.106] unit increase	Illumina [at least 560000] (imputed)	N
644	chr16	7829307	7829308	rs3112732	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	16p13.3	intergenic	rs3112732-T	0.13	5E-6		4.58	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
644	chr16	7836296	7836297	rs3112740	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	16p13.3	intergenic	rs3112740-?	0.86	6E-6	(CPDBI)	2.16	[NR]	Illumina [~ 518000]	N
644	chr16	7840180	7840181	rs4238884	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	16p13.3	NR	rs4238884-T	0.9438	6E-6		0.0232	[0.013-0.033] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
644	chr16	7844411	7844412	rs12597282	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	16p13.3	intergenic	rs12597282-C	0.534	7E-6	(AA)	0.446	unit decrease	Illumina [at least 5086170] (imputed)	N
645	chr16	7903608	7903609	rs12446289	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	16p13.2	intergenic	rs12446289-C		6E-6		0.2893	unit increase	Illumina [5767231] (imputed)	N
645	chr16	7929827	7929828	rs9788927	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	16p13.2	RBFOX1	rs9788927-A	0.1481	2E-6		1.019	[NR] unit decrease	Illumina [1216074] (imputed)	N
645	chr16	7931284	7931285	rs7186844	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	16p13.2	LOC105371069	rs7186844-?	NR	3E-6				Affymetrix, Illumina [2723488] (imputed)	N
645	chr16	7932577	7932578	rs75728418	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.2	NR	rs75728418-?	NR	1E-7	(Latino)	1.2847	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
645	chr16	7933805	7933806	rs72763714	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	16p13.2	LOC105371069	rs72763714-?	NR	4E-6				Affymetrix, Illumina [4802696] (imputed)	N
645	chr16	7943551	7943552	rs11644446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.2		rs11644446-A	0.1562	2E-9		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
645	chr16	7943551	7943552	rs11644446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.2	Intergenic	rs11644446-A	0.1562	1E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
645	chr16	7955133	7955134	rs34670506	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	16p13.2	CTD-2535I10.1b	rs34670506-C	NR	2E-8	(AA)	2.7027025		Illumina [at least 360704] (imputed)	N
645	chr16	7960293	7960294	rs4640169	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	16p13.2	AC093515.1	rs4640169-C	0.9986	8E-6		0.8936	[0.5-1.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
645	chr16	7995282	7995283	rs1395594	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	16p13.2		rs1395594-?	NR	1E-5				Illumina [7401356] (imputed)	N
646	chr16	8011272	8011273	rs76485637	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	16p13.2	NR	rs76485637-G	0.163	4E-6	(Females)	0.342516	[0.2-0.49] unit increase	Illumina [~ 6600000] (imputed)	N
646	chr16	8040300	8040301	rs36028358	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16p13.2	NR	rs36028358-T	0.222	3E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
646	chr16	8056495	8056496	rs3112643	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	16p13.2	RBFOX1	rs3112643-T	0.0149	3E-8	(SM d18:1/14:0)	0.5154	[0.33-0.7] unit increase	Illumina [~ 47000000] (imputed)	N
646	chr16	8119307	8119308	rs17672855	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.2	C16orf68	rs17672855-?	NR	2E-6	(adenosine diphosphate)	0.43577674	[0.26-0.61] unit decrease	Affymetrix [at least 2500000] (imputed)	N
646	chr16	8122671	8122672	rs184252378	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p13.2	Intergenic	rs184252378-G	1.0	1E-6	(AA)	1.006	unit increase	Illumina [NR] (imputed)	N
647	chr16	8195277	8195278	rs12445235	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16p13.2	RBFOX1, TMEM114	rs12445235-G	0.5902000000000001	1E-8		1.0213243		Affymetrix [11880941] (imputed)	N
647	chr16	8205940	8205941	rs117748831	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p13.2	intergenic	rs117748831-G	0.0399710455439161	3E-6	(F_Veillonellaceae_HB)	0.631091	[0.37-0.89] unit decrease	Illumina [7711310] (imputed)	N
647	chr16	8211022	8211023	rs11649532	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	16p13.2	RBFOX1	rs11649532-T	0.0777408	7E-6		0.587	[0.465 - 0.741]	Illumina [5397362] (imputed)	N
647	chr16	8244205	8244206	rs6501083	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	16p13.2	NR	rs6501083-G	0.375	2E-6	(Unifrac metric)	4.590877	NR z-score increase	Illumina [5293637] (imputed)	N
648	chr16	8285827	8285828	rs1868971	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	16p13.2	A2BP1, TMEM114	rs1868971-?	0.74	3E-6	(EA)	2.5	[1.67-3.7]	Illumina [up to 547389]	N
648	chr16	8288400	8288401	rs79537509	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	16p13.2	RBFOX1	rs79537509-?		5E-7	(model 2)	4.61	[2.51-8.47]	Illumina [29610185] (imputed)	N
648	chr16	8289395	8289396	rs921471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.2		rs921471-?	NR	2E-8				NR [~ 8900000] (imputed)	N
648	chr16	8297684	8297685	rs982855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.2		rs982855-T	NR	4E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
648	chr16	8297684	8297685	rs982855	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	16p13.2	RBFOX1, TMEM114	rs982855-?		2E-6	(French Canadians)	1.7190902		Illumina [7614484] (imputed)	N
648	chr16	8302777	8302778	rs12919950	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p13.2	NR	rs12919950-?		9E-6				Illumina [4322238] (imputed)	N
648	chr16	8329326	8329327	rs2034588	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	16p13.2	intergenic	rs2034588-G	0.02	2E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
648	chr16	8330447	8330448	rs67915817	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	16p13.2	RBFOX1	rs67915817-A	0.091599	5E-6		0.696811	[0.4-1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
648	chr16	8385728	8385729	rs29582	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	16p13.2	RBFOX1, TMEM114	rs29582-A	0.3989	1E-6		4.831		Affymetrix [757439]	N
649	chr16	8402072	8402073	rs146767487	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	16p13.2		rs146767487-T	NR	3E-6	(GLM)	4.0595	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
649	chr16	8458214	8458215	rs12325385	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs12325385-?	NR	4E-6				Affymetrix [NR]	N
649	chr16	8470581	8470582	rs9934899	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	16p13.2	intergenic	rs9934899-G	0.06	8E-6		0.141	[0.08-0.202] unit increase	Illumina [6380737] (imputed)	N
649	chr16	8503221	8503222	rs8045405	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	16p13.2	intergenic	rs8045405-G		9E-6		11.38	[NR] ms decrease	Illumina [> 930000]	N
649	chr16	8508590	8508591	rs55686778	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	16p13.2	NR	rs55686778-T	0.19	2E-7		1.15	[1.09-1.21]	Illumina [~ 1072558] (imputed)	N
649	chr16	8517744	8517745	rs11861787	23962720	Speed D	2013-08-19	Hum Mol Genet	A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.	Epilepsy (remission after treatment)	889 European and unknown ancestry epilepsy cases	NA	16p13.2	NR	rs11861787-C	0.25	3E-6		1.8868	[NR]	Illumina [6923995] (imputed)	N
650	chr16	8535225	8535226	rs145774514	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	16p13.2	NR	rs145774514-?	NR	5E-6		1.2302	[0.77-1.69] unit decrease	Illumina [at least 560000] (imputed)	N
650	chr16	8540730	8540731	rs12929740	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	16p13.2	NR	rs12929740-A	NR	8E-6		0.02144	[0.012-0.031] unit increase	Illumina [~ 540852]	N
650	chr16	8586244	8586245	rs8053655	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	16p13.2	LRRC36	rs8053655-A	0.055	2E-8		1.13	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
650	chr16	8607847	8607848	rs74007850	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	16p13.2		rs74007850-?	NR	8E-6		0.374	[0.21-0.54] unit increase	Illumina [5082878] (imputed)	N
650	chr16	8619749	8619750	rs7198383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.2		rs7198383-?	NR	6E-14				NR [~ 8900000] (imputed)	N
651	chr16	8732231	8732232	rs1641047	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	16p13.2	C16orf68	rs1641047-?	NR	5E-7	(EA)			Illumina [126270]	N
652	chr16	8799162	8799163	rs59791969	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.2	NR	rs59791969-A	0.01045	2E-8	(UCHL3)	0.01754	NR unit decrease	Illumina [1671387] (imputed)	N
652	chr16	8834084	8834085	rs75055007	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	16p13.2	ABAT	rs75055007-?	NR	3E-6		3.846154		Affymetrix [8800000] (imputed)	N
652	chr16	8871080	8871081	rs1299926	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	16p13.2	ABAT	rs1299926-T	0.054	8E-6	(Temperament)	0.26	[NR] unit increase	Affymetrix [677643]	N
652	chr16	8871387	8871388	rs1641025	30277654	Yokoshima Y	2018-09-14	Neuropsychopharmacol Rep	Gamma-aminobutyric acid transaminase genetic polymorphism is a candidate locus for responsiveness to opioid analgesics in patients with cancer pain: An exploratory study.	Response to opioid analgesics in cancer (pain decrease)	71 Japanese ancestry individuals	NA	16p13.2	ABAT	rs1641025-T	0.27	2E-8		0.36	[NR] unit increase	Illumina [771433]	N
652	chr16	8896930	8896931	rs3785176	25173107	Chen Y	2014-08-31	Nat Genet	Common variants near ABCA1 and in PMM2 are associated with primary open-angle glaucoma.	Glaucoma (high intraocular pressure)	966 Han Chinese ancestry cases, 1,005 Han Chinese ancestry controls	1,140 Han Chinese ancestry cases, 2,237 Han Chinese ancestry controls	16p13.2	PMM2	rs3785176-G	0.23	2E-7		1.28	[1.17-1.41]	Illumina [870261]	N
652	chr16	8908810	8908811	rs8057024	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Frequency of relapse in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	16p13.2	NR	rs8057024-?	NR	3E-6		1.4127	[0.83-1.99] unit decrease	Affymetrix [7154205] (imputed)	N
653	chr16	8960307	8960311	rs575333217	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16p13.2	CARHSP1	rs575333217-?		8E-9		0.4102	[0.27-0.55] unit decrease	Illumina [31500000] (imputed)	N
653	chr16	8960324	8960325	rs138031402	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	16p13.2	CARHSP1	rs138031402-?		9E-7	(French Canadians)	4.2953296		Illumina [7614484] (imputed)	N
653	chr16	8988691	8988692	rs11551183	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	16p13.2	NR	rs11551183-G	NR	3E-6		0.3715	[0.22-0.53] SD units decrease	NR [10700000] (imputed)	N
653	chr16	8988776	8988777	rs2304467	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16p13.2		rs2304467-C	0.6026	4E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
653	chr16	8988776	8988777	rs2304467	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16p13.2	USP7	rs2304467-G	0.39339999999999997	7E-9		1.0239831		Affymetrix [11880941] (imputed)	N
653	chr16	8999547	8999548	rs1347580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.2		rs1347580-T	NR	3E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
653	chr16	9010710	9010711	rs76147374	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.2	NR	rs76147374-T	0.01045	2E-8	(AKR1B10)	2.186	NR unit increase	Illumina [1671387] (imputed)	N
653	chr16	9028540	9028541	rs1677490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p13.2		rs1677490-C	NR	3E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
653	chr16	9028540	9028541	rs1677490	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p13.2	USP7	rs1677490-C	0.79368	7E-9		0.015921362	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
653	chr16	9028540	9028541	rs1677490	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.2	NR	rs1677490-C	0.796624	6E-10				Affymetrix, Illumina [23472807] (imputed)	N
653	chr16	9028540	9028541	rs1677490	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p13.2	NR	rs1677490-C	0.7912	1E-11		0.015901	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
653	chr16	9032014	9032015	rs7190551	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16p13.2	USP7	rs7190551-A	0.1757	1E-12		0.0334153	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
653	chr16	9035383	9035384	rs166232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.2		rs166232-?	NR	1E-17				NR [~ 8900000] (imputed)	N
653	chr16	9035466	9035467	rs141361914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.2		rs141361914-?	NR	5E-8				NR [~ 8900000] (imputed)	N
653	chr16	9037903	9037904	rs8049394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.2	USP7	rs8049394-A	0.252444	4E-18		0.022559348	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
653	chr16	9040399	9040400	rs9932027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.2	NR	rs9932027-C	0.163561	9E-26				Affymetrix, Illumina [24588908] (imputed)	N
653	chr16	9041493	9041493	rs34890846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.2	USP7	rs34890846-ATTG	0.188208	8E-16		0.023300258	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
654	chr16	9045461	9045462	rs9926137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p13.2		rs9926137-C	NR	1E-21		0.0272	[0.022-0.033] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
654	chr16	9045461	9045462	rs9926137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p13.2	USP7	rs9926137-C	0.189229	3E-38		0.037223116	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
654	chr16	9045461	9045462	rs9926137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p13.2	NR	rs9926137-C	0.191099	2E-25		0.024533	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
654	chr16	9045461	9045462	rs9926137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p13.2	NR	rs9926137-G	0.809932	2E-25		0.025653	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
654	chr16	9047197	9047198	rs9924441	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.2	USP7	rs9924441-T	0.2539	2E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix [18391927] (imputed)	N
654	chr16	9047377	9047378	rs9931153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.2	USP7	rs9931153-C	0.287742	1E-11		0.01731314	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr16	9047650	9047651	rs534977154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p13.2		rs534977154-C	NR	3E-8		0.0219	[0.014-0.03] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
654	chr16	9048034	9048035	rs183725	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16p13.2	USP7	rs183725-C	0.7676	5E-9		0.02599643	[0.017-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
654	chr16	9048328	9048329	rs6498271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.2	NR	rs6498271-C	0.803673	6E-23				Affymetrix, Illumina [17210439] (imputed)	N
654	chr16	9050636	9050637	rs11865642	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	16p13.2	NR	rs11865642-C	0.1829	3E-8		0.0183694	[0.012-0.025] unit decrease	Affymetrix [3505788] (imputed)	N
654	chr16	9050638	9050639	rs12929087	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	16p13.2	NR	rs12929087-A	0.578314	2E-10		0.0129587	[0.009-0.017] unit increase	Affymetrix [16583148] (imputed)	N
654	chr16	9059240	9059241	rs111792818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.2		rs111792818-?	NR	2E-9				NR [~ 8900000] (imputed)	N
654	chr16	9109077	9109078	rs35925564	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	16p13.2	NR	rs35925564-A		7E-6		0.3693	[0.21-0.53] unit decrease	Illumina [12759548] (imputed)	N
654	chr16	9111136	9111137	rs17567276	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs17567276-?	NR	7E-6				Affymetrix [NR]	N
654	chr16	9118635	9118636	rs11648694	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	16p13.2		rs11648694-?	NR	7E-6				Illumina [7401356] (imputed)	N
654	chr16	9120808	9120809	rs35498131	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	16p13.2	NR	rs35498131-?	NR	7E-7		1.7869906	[1.42-2.25]	Affymetrix, Illumina [6717712] (imputed)	N
654	chr16	9138020	9138021	rs75552805	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16p13.2	NR	rs75552805-T	0.106	8E-7	(IFNalpha_STAT4_of_CD20p)			Illumina [5084123] (imputed)	N
654	chr16	9148600	9148601	rs59642482	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.2	NR	rs59642482-A	0.371915	3E-23		0.0318957	[0.026-0.038] unit decrease	NR [19129689] (imputed)	N
654	chr16	9150237	9150238	rs12598376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16p13.2		rs12598376-?	NR	3E-13				NR [~ 8900000] (imputed)	N
654	chr16	9155980	9155981	rs138852022	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	16p13.2	Intergenic	rs138852022-G	0.01	7E-7		17.04	[NR] unit increase	Affymetrix [7884700] (imputed)	N
654	chr16	9158319	9158320	rs146169233	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	16p13.2	Intergenic	rs146169233-T	0.01	2E-8	(Women)	52.0	[34-70] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr16	9191789	9191790	rs12924275	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p13.2	NR	rs12924275-T	0.268	2E-8		1.039	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
655	chr16	9205362	9205363	rs9039	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	16p13.2	C16orf72, ABAT	rs9039-C	0.28	3E-8		0.12	[0.081-0.159] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
655	chr16	9207002	9207003	rs1128001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.2		rs1128001-C	NR	4E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
655	chr16	9210372	9210373	rs8045589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.2		rs8045589-?	NR	1E-9				NR [~ 8900000] (imputed)	N
655	chr16	9213879	9213880	rs3743832	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NA	16p13.2	NR	rs3743832-A	0.39	4E-6		1.724	[NR] unit decrease	Illumina [527829]	N
655	chr16	9213879	9213880	rs3743832	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	16p13.2	NR	rs3743832-A	0.39	9E-7	(Non-substance related behavioral disinhibition)			Illumina [527829]	N
655	chr16	9225493	9225494	rs12933086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.2		rs12933086-?	NR	4E-8				NR [~ 8900000] (imputed)	N
655	chr16	9227720	9227721	rs12921204	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	16p13.2	C16orf72	rs12921204-T	NR	3E-9		1.08	[1.06-1.1]	Affymetrix [up to 49134253] (imputed)	N
655	chr16	9230815	9230816	rs28455634	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	16p13.2	C16orf72	rs28455634-G	0.62	3E-10		1.06481	[1.05-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
655	chr16	9252655	9252656	rs9937469	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with memory domain impairment	Up to 1,107 European ancestry cases, 3,447 European ancestry controls	NA	16p13.2	NR	rs9937469-T	0.06	2E-6		2.14	[1.83-2.45]	NR [up to 6398204] (imputed)	N
655	chr16	9293245	9293246	rs8052523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.2		rs8052523-T	0.5697	3E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
655	chr16	9295647	9295648	rs76256164	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.2	NR	rs76256164-C	0.02091	2E-8	(COL18A1)	0.05024	NR unit increase	Illumina [1671387] (imputed)	N
655	chr16	9297811	9297812	rs79900961	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	16p13.2	C16orf72	rs79900961-?	0.98	5E-8		1.49	[1.26-1.76]	Affymetrix, Illumina [~ 10000000] (imputed)	N
655	chr16	9298256	9298257	rs8058227	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.2	Intergenic	rs8058227-T	0.4079	3E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
656	chr16	9312781	9312782	rs2941318	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.2	NR	rs2941318-?	NR	9E-7	(male)	0.12888	[0.077-0.18] unit decrease	Affymetrix [7794483] (imputed)	N
656	chr16	9312781	9312782	rs2941318	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.2	NR	rs2941318-?	NR	1E-7		0.11308	[0.071-0.155] unit decrease	Affymetrix [7794483] (imputed)	N
656	chr16	9325984	9325985	rs4782151	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	16p13.2	intergenic	rs4782151-C	0.4677	5E-6		1.91	[1.44-2.52]	Affymetrix [556045]	N
656	chr16	9343346	9343347	rs1397142	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.2	RPL21P119	rs1397142-A	0.359	6E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
656	chr16	9376754	9376755	rs77561866	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	16p13.2		rs77561866-A	NR	4E-6	(GLM)	4.5798	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
656	chr16	9382328	9382329	rs8061903	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	16p13.2	AC087190.5-2	rs8061903-?	NR	5E-6				Illumina [990115]	N
656	chr16	9395338	9395339	rs4780973	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	16p13.2	LOC101927026	rs4780973-C	0.69	4E-6		1.22	[1.12-1.32]	NR [7738399] (imputed)	N
656	chr16	9397932	9397933	rs602651	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs602651-?	NR	2E-31				Affymetrix [NR]	N
656	chr16	9399723	9399724	rs631208	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	16p13.2	intergenic	rs631208-A	0.60	2E-6		1.18	[1.10-1.26]	Affymetrix, Illumina [2217510] (imputed)	N
656	chr16	9412221	9412222	rs249293	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.2	NR	rs249293-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
656	chr16	9412221	9412222	rs249293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.2		rs249293-?	NR	2E-10				NR [~ 8900000] (imputed)	N
656	chr16	9412221	9412222	rs249293	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.2	NA	rs249293-C	0.6985	3E-11		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
656	chr16	9413209	9413210	rs39674	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.2	C16orf72	rs39674-C	0.30395	6E-9		0.00871427	[0.0058-0.0117] unit decrease	Affymetrix [12370749]	N
656	chr16	9416636	9416637	rs61666746	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p13.2	NR	rs61666746-?		4E-6				Illumina [4322238] (imputed)	N
657	chr16	9438362	9438363	rs42362	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.2		rs42362-C	0.26362	1E-9		0.1935	[0.13-0.26] unit increase	Illumina [17926605] (imputed)	N
657	chr16	9438691	9438692	rs40129	25194280	Wei Q	2014-09-07	Nat Genet	Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.	Laryngeal squamous cell carcinoma	993 Chinese ancestry cases, 1,995 Chinese ancestry controls	2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls	16p13.2	GRIN2A	rs40129-?	0.25	4E-7		1.21	[1.12-1.30]	Affymetrix [662108]	N
657	chr16	9506147	9506148	rs9931034	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.2	GRIN2A	rs9931034-?	NR	3E-6	(tyrosine)	2.3804388	[1.38-3.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
658	chr16	9629066	9629067	rs4141488	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p13.2	GRIN2A	rs4141488-T	0.499	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
658	chr16	9631361	9631362	rs4780490	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	16p13.2	Intergenic	rs4780490-C	NR	8E-6	(adjusted for total body fat)	0.0794	[0.045-0.114] unit decrease	Illumina [8511049] (imputed)	N
658	chr16	9631361	9631362	rs4780490	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	16p13.2	NR	rs4780490-C	0.3592	3E-6		0.1498	[0.087-0.212] unit increase	Illumina [10677593] (imputed)	N
658	chr16	9675245	9675246	rs12325410	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	16p13.2	intergenic	rs12325410-T		1E-6	(Modelling analysis)	1.09	[1.05-1.13]	NR [1252901] (imputed)	N
659	chr16	9713193	9713194	rs12927792	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p13.2	RP11-297M9.1	rs12927792-C	0.573589	5E-10		0.00867045	[0.0059-0.0114] unit decrease	Affymetrix [12370749]	N
659	chr16	9713687	9713688	rs1990573	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.2	NA	rs1990573-A	0.3061	2E-13		0.0129	[0.0094-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
659	chr16	9713687	9713688	rs1990573	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p13.2	NA	rs1990573-A	0.3061	2E-13		0.0129	[0.0094-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
659	chr16	9720129	9720130	rs8062638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.2	NR	rs8062638-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
659	chr16	9720129	9720130	rs8062638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.2		rs8062638-?	NR	2E-11				NR [~ 8900000] (imputed)	N
659	chr16	9733273	9733274	rs11640322	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p13.2	NR	rs11640322-A	0.293	9E-10		0.016683014	[0.011-0.022] unit increase	Affymetrix [10549349] (imputed)	N
659	chr16	9733730	9733731	rs35014268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.2		rs35014268-C	NR	7E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
659	chr16	9733730	9733731	rs35014268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p13.2	NR	rs35014268-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
659	chr16	9744094	9744095	rs17550532	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	16p13.2	intergenic	rs17550532-?	0.21	2E-6	(Recessive)	1.33	[1.18-1.49]	Affymetrix [319222]	N
659	chr16	9822010	9822011	rs1833170	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	16p13.2	C16orf72, GRIN2A	rs1833170-?		8E-6				Illumina [~ 5190000] (imputed)	N
659	chr16	9829847	9829848	rs6497441	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Chronic kidney disease	658 European ancestry child cases, 1,347 European ancestry child controls	NA	16p13.2	GRIN2A	rs6497441-T	0.29	5E-6		1.44	[1.23-1.69]	Illumina [~ 8300000] (imputed)	N
660	chr16	9862555	9862556	rs11866328	22004137	Liu L	2011-10-01	Viral Immunol	A genome-wide association study with DNA pooling identifies the variant rs11866328 in the GRIN2A gene that affects disease progression of chronic HBV infection.	Hepatitis B	1,944 Han Chinese ancestry progressed cases, 854 Han Chinese ancestry asymptomatic carriers	NA	16p13.2	GRIN2A	rs11866328-G	NR	2E-8		1.68	[1.40-2.02]	Affymetrix [NR]	N
660	chr16	9874698	9874699	rs11648559	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	16p13.2	NR	rs11648559-T	0.3131	1E-8		0.069688074	[0.046-0.094] unit increase	NR [NR]	N
660	chr16	9900056	9900057	rs7191183	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	16p13.2	NR	rs7191183-?	NR	2E-8				Illumina [up to 5582932] (imputed)	N
660	chr16	9900056	9900057	rs7191183	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	16p13.2	GRIN2A	rs7191183-?	NR	6E-9		1.0615711	[1.04-1.08]	Illumina [8000000] (imputed)	N
660	chr16	9900056	9900057	rs7191183	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	16p13.2	GRIN2A	rs7191183-?		2E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
660	chr16	9900483	9900484	rs7191999	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7191999-?	NR	3E-10				NR [2625067]	N
660	chr16	9900483	9900484	rs7191999	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs7191999-?	NR	2E-10				NR [2625067]	N
660	chr16	9911385	9911386	rs8058295	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	16p13.2	GRIN2A	rs8058295-A		7E-6	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
660	chr16	9914132	9914133	rs1420044	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	16p13.2	NR	rs1420044-T	0.065290717	1E-7		0.2902695	[0.18-0.4] unit decrease	Affymetrix [536506]	N
660	chr16	9926347	9926348	rs7199910	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	16p13.2	GRIN2A	rs7199910-T	0.688	2E-8		0.94582	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
660	chr16	9926965	9926966	rs11647445	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	16p13.2	GRIN2A	rs11647445-T	NR	9E-11		0.928	[0.907-0.949]	Illumina [3742365] (imputed)	N
660	chr16	9926965	9926966	rs11647445	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	16p13.2	NR	rs11647445-?		2E-9				NR [520857]	N
660	chr16	9926965	9926966	rs11647445	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	16p13.2	GRIN2A	rs11647445-G	0.346	1E-10		1.0785276		NR [9372253] (imputed)	N
660	chr16	9926965	9926966	rs11647445	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	16p13.2	GRIN2A	rs11647445-G	0.346	5E-7		1.0834001	[NR]	NR [9372253] (imputed)	N
660	chr16	9939959	9939960	rs9926049	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	16p13.2	NR	rs9926049-A	0.3201	3E-11		0.07782277	[0.055-0.101] unit increase	NR [NR]	N
660	chr16	9945918	9945919	rs41356645	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16p13.2	NR	rs41356645-?	NR	1E-10		1.07283	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
660	chr16	9946318	9946319	rs9922678	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	16p13.2	NR	rs9922678-A	0.3211	6E-11		0.07721583	[0.054-0.1] unit increase	NR [NR]	N
660	chr16	9946318	9946319	rs9922678	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	16p13.2	NR	rs9922678-?		3E-9				NR [8377093]	N
660	chr16	9946318	9946319	rs9922678	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16p13.2	GRIN2A	rs9922678-?		3E-10				NR [6786993] (imputed)	N
660	chr16	9946318	9946319	rs9922678	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p13.2	GRIN2A	rs9922678-A	NR	6E-9	(EA)	1.0708	[1.05-1.09]	Illumina [6627481] (imputed)	N
660	chr16	9946318	9946319	rs9922678	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p13.2	GRIN2A	rs9922678-A	NR	2E-8		1.062	[1.04-1.08]	Illumina [6627481] (imputed)	N
660	chr16	9946318	9946319	rs9922678	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	16p13.2	GRIN2A	rs9922678-A	NR	3E-9		1.065	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
660	chr16	9946318	9946319	rs9922678	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.2	NR	rs9922678-A	NR	2E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
660	chr16	9946318	9946319	rs9922678	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	16p13.2	GRIN2A	rs9922678-A	0.281	1E-8		1.067	[1.043-1.091]	Affymetrix, Illumina [9005918] (imputed)	N
660	chr16	9953671	9953672	rs17800861	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Full scale intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	16p13.2	NR	rs17800861-A	NR	7E-7		3.32	[2.01-4.63] unit decrease	Illumina [2141747] (imputed)	N
661	chr16	9968502	9968503	rs7204266	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	16p13.2	GRIN2A	rs7204266-?	0.28	7E-6		0.69	unit increase	Illumina [828141]	N
661	chr16	9992218	9992219	rs16966656	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs16966656-?	NR	1E-6				Affymetrix [NR]	N
661	chr16	9996930	9996931	rs193201466	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.2	NR	rs193201466-?	NR	5E-6		4.584	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
661	chr16	10005906	10005907	rs140019346	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	16p13.2	NR	rs140019346-?	NR	1E-6		3.8999	[1.23-6.57] unit decrease	Illumina [at least 560000] (imputed)	N
661	chr16	10067542	10067543	rs12928694	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	16p13.2		rs12928694-A	0.159	6E-6		0.123792	[0.071-0.177] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
661	chr16	10069289	10069290	rs3104705	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.2	NR	rs3104705-A	0.13	1E-6		0.0189	[0.011-0.026] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
661	chr16	10070284	10070285	rs12924396	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	16p13.2	GRIN2A	rs12924396-G	0.4689	8E-7		0.81	[0.75-0.88]	Illumina [64973696] (imputed)	N
661	chr16	10071157	10071158	rs3104707	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.2	NR	rs3104707-A	0.1288	5E-6		0.020325756	[0.012-0.029] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
662	chr16	10101151	10101152	rs72774059	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.2	NR	rs72774059-A	NR	3E-9		5.911	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
662	chr16	10113375	10113376	rs837705	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.2	NR	rs837705-A	NR	3E-8		5.539	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
662	chr16	10134636	10134637	rs60920123	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	16p13.2	GRIN2A	rs60920123-G		2E-9		0.0052	[0.0034-0.007] unit increase	Affymetrix [13304133] (imputed)	N
662	chr16	10136888	10136889	rs11074547	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.2	GRIN2A	rs11074547-T	0.7378	2E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
662	chr16	10136888	10136889	rs11074547	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.2	GRIN2A	rs11074547-T	0.7378	3E-6		0.0122	[0.0071-0.0173] unit decrease	Affymetrix [19819130] (imputed)	N
662	chr16	10145292	10145293	rs1900719	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16p13.2	NR	rs1900719-A		7E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
662	chr16	10147477	10147478	rs7206296	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	16p13.2		rs7206296-?	NR	1E-10				NR [7857346] (imputed)	N
662	chr16	10147477	10147478	rs7206296	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16p13.2	NR	rs7206296-?	NR	5E-6		0.0078588	[0.0045-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
662	chr16	10151233	10151234	rs117304774	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p13.2	GRIN2A	rs117304774-?	NR	4E-9		0.04517018	[0.03-0.06] unit decrease	NR [7306098]	N
662	chr16	10151356	10151357	rs1448258	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs1448258-?	NR	2E-6				Affymetrix [NR]	N
662	chr16	10173052	10173053	rs2352744	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16p13.2	NR	rs2352744-A	0.48	1E-8		0.00835957	[0.0055-0.0112] unit increase	NR [9732723] (imputed)	N
662	chr16	10173747	10173748	rs7192140	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.2		rs7192140-T	0.507	1E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
662	chr16	10173747	10173748	rs7192140	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.2	NR	rs7192140-C	0.498	2E-15		0.00854911	[0.0064-0.0107] unit decrease	NR [9732723] (imputed)	N
662	chr16	10173747	10173748	rs7192140	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p13.2	NR	rs7192140-C	0.498	3E-11		0.016883379	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
662	chr16	10181635	10181636	rs4780790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p13.2		rs4780790-?	NR	1E-8				NR [~ 8900000] (imputed)	N
662	chr16	10183086	10183087	rs1463132	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	16p13.2	NR	rs1463132-?	NR	8E-6	(progression)			Illumina [NR]	N
662	chr16	10188059	10188060	rs7203315	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	16p13.2	GRIN2A	rs7203315-T	0.34	4E-6	(AA-triglyceride response)	15.83	[9.13-22.53] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
662	chr16	10192480	10192481	rs72774191	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	16p13.2		rs72774191-?	NR	1E-8				NR [7857346] (imputed)	N
662	chr16	10205466	10205467	rs117468730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.2		rs117468730-A	0.0205	5E-10		0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
662	chr16	10205466	10205467	rs117468730	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	16p13.2	NR	rs117468730-?	0.9787	2E-8		1.122456	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
662	chr16	10215812	10215813	rs1868289	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16p13.2	GRIN2A	rs1868289-?		1E-17				Affymetrix, Illumina [NR] (imputed)	N
662	chr16	10215936	10215937	rs62035769	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	16p13.2	GRIN2A	rs62035769-C	NR	7E-6		0.0884795	[0.05-0.127] unit decrease	Illumina [at least 950000] (imputed)	N
662	chr16	10219416	10219417	rs4782271	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16p13.2	GRIN2A	rs4782271-A	0.828	2E-10		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
662	chr16	10221453	10221454	rs72776049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.2	Intergenic	rs72776049-T	0.6871	9E-9	(MTAG)	0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
663	chr16	10225734	10225735	rs11074604	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	16p13.2	NR	rs11074604-?		4E-6		1.72	[1.37-2.18]	Illumina [539473] (imputed)	N
663	chr16	10241453	10241454	rs12926704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.2		rs12926704-?	NR	1E-8				NR [~ 8900000] (imputed)	N
663	chr16	10249415	10249416	rs1097784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.2		rs1097784-T	0.5021	3E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
663	chr16	10266114	10266115	rs35016816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.2		rs35016816-T	0.899	4E-14		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
663	chr16	10266114	10266115	rs35016816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.2	Intergenic	rs35016816-T	0.899	6E-15	(MTAG)	0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
663	chr16	10286046	10286047	rs193149952	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	16p13.2	intergenic	rs193149952-A	0.9942	4E-6		0.1966	[0.11-0.28] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
663	chr16	10286636	10286637	rs188650377	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	16p13.2	GRIN2A	rs188650377-T	0.01	3E-6		14.285714	[4.55-50]	Affymetrix, Illumina [up to 7729175] (imputed)	N
663	chr16	10288861	10288862	rs8046217	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.2	Intergenic	rs8046217-A	0.1077	1E-11	(MTAG)	0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
663	chr16	10299321	10299322	rs139215580	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	16p13.2	NR	rs139215580-?	NR	8E-6		4.6948	[-0.07114-9.46074] unit increase	Illumina [at least 560000] (imputed)	N
663	chr16	10318778	10318779	rs16951883	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Subscapular skin fold thickness	8,842 Korean ancestry individuals	NA	16p13.2	NR	rs16951883-?		5E-7				NR [327872]	N
663	chr16	10330276	10330277	rs13330098	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.2	NR	rs13330098-?	NR	1E-8				Affymetrix [NR]	N
663	chr16	10349892	10349893	rs11074683	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16p13.2	ATF7IP2, GRIN2A, IMPDH1P11	rs11074683-T	NR	9E-6	(number of awakenings after sleep onset)	0.09175	[0.051-0.132] unit increase	Affymetrix [7141204] (imputed)	N
664	chr16	10359588	10359589	rs194326	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	16p13.2	RN7SL493P	rs194326-C	0.32	1E-6		0.89	NR unit increase	Illumina [NR] (imputed)	N
664	chr16	10364162	10364163	rs6497871	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	16p13.2	NR	rs6497871-A	0.6	7E-6		1.24	1.13-1.37	NR [8814543] (imputed)	N
664	chr16	10367948	10367949	rs12924820	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	16p13.2	NR	rs12924820-A	NR	2E-6	(GEE model)	0.47702	[0.28-0.67] unit decrease	NR [NR] (imputed)	N
664	chr16	10372519	10372520	rs147774538	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p13.2	NR	rs147774538-?	NR	4E-6	(Native Hawaiian)	1.0415	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
664	chr16	10427123	10427124	rs182823884	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	16p13.2		rs182823884-C	NR	4E-6		0.5169	[0.3-0.74] increase	Illumina [6334277] (imputed)	N
664	chr16	10440803	10440804	rs12598337	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar pliability	665 European ancestry individuals	NA	16p13.2	intergenic	rs12598337-G	0.0822	8E-6		0.4409	[0.25-0.63] unit decrease	Illumina [298150]	N
665	chr16	10559262	10559263	rs13335336	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	16p13.13	ATF7IP2	rs13335336-?	0.078	7E-7	(risperidone-hemoglobin A1c)			Affymetrix [492900]	N
665	chr16	10578804	10578805	rs1125474	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.13	EMP2	rs1125474-?	NR	5E-6	(PC 36:2)	0.52144426	[0.3-0.75] unit decrease	Affymetrix [at least 2500000] (imputed)	N
665	chr16	10585349	10585350	rs28368872	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression to choroidal neovascularization form in age-related macular degeneration	508 progressed eyes and 3,912 non-progressed eyes from up to 2,721 European ancestry individuals	NA	16p13.13	ATF7IP2	rs28368872-A	0.12	3E-8		1.69		Illumina [8974355] (imputed)	N
665	chr16	10586101	10586102	rs12930861	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	16p13.13	RNU6-633P, ATF7IP2	rs12930861-G	0.1	8E-7		1.49		Illumina [8974355] (imputed)	N
665	chr16	10593202	10593203	rs184822539	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p13.13	NR	rs184822539-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
665	chr16	10598306	10598307	rs58376408	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.13	NR	rs58376408-?	NR	2E-9	(Latino)	1.3522	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
665	chr16	10612463	10612464	rs4780934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.13		rs4780934-?	NR	9E-11				NR [~ 8900000] (imputed)	N
666	chr16	10617280	10617281	rs7195286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16p13.13	NR	rs7195286-T	0.536323	1E-10		0.012001	[0.0083-0.0157] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
666	chr16	10624904	10624905	rs9937170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.13		rs9937170-?	NR	8E-9				NR [~ 8900000] (imputed)	N
666	chr16	10625886	10625887	rs7195563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.13	NR	rs7195563-T	0.543132	3E-10		0.011715	[0.0081-0.0154] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
666	chr16	10630776	10630777	rs6498068	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	16p13.13	EMP2	rs6498068-C		6E-6		0.2897	unit decrease	Illumina [5767231] (imputed)	N
666	chr16	10633164	10633165	rs11074889	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	16p13.13	EMP2	rs11074889-A	0.16	7E-7		1.68	[NR]	Illumina [835136]	N
666	chr16	10635599	10635600	rs2354413	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.13	EMP2	rs2354413-C	0.59923	5E-10		0.0117175	[0.008-0.0154] unit decrease	NR [13737936] (imputed)	N
666	chr16	10650700	10650701	rs7186843	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	16p13.13	TEKT5	rs7186843-?	NR	7E-11	(>=14 yr)			Illumina [747780]	N
666	chr16	10650700	10650701	rs7186843	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	16p13.13	TEKT5	rs7186843-?	NR	4E-10				Illumina [747780]	N
666	chr16	10663626	10663627	rs2221433	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	16p13.13	TEKT5, EMP2	rs2221433-G	0.682	5E-6		0.087	[0.05-0.124] unit decrease	Illumina [6150213] (imputed)	N
666	chr16	10688265	10688266	rs35137126	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	16p13.13	NR	rs35137126-GC		9E-6		0.0772	[0.043-0.112] SD units increase	NR [10700000] (imputed)	N
666	chr16	10703687	10703688	rs12918713	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16p13.13	NR	rs12918713-C	0.0674	1E-7	(EA)	0.0688	[0.043-0.094] unit decrease	Illumina [~ 11800000] (imputed)	N
666	chr16	10706327	10706328	rs12149828	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	16p13.13	EMP2, TEKT5	rs12149828-G	NR	8E-10	(adults)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
666	chr16	10709012	10709013	rs56134392	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	16p13.13	TEKT5	rs56134392-C	0.35	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
666	chr16	10725477	10725478	rs55749134	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	16p13.13	TEKT5, EMP2, NUBP1	rs55749134-G	0.14	5E-7		0.7	[0.43-0.97] unit decrease	Illumina [8257341] (imputed)	N
666	chr16	10740981	10740982	rs78442819	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	16p13.13	TEKT5	rs78442819-C	0.1997	1E-6		0.0157	[0.0094-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
666	chr16	10740981	10740982	rs78442819	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16p13.13	TEKT5	rs78442819-C	0.1997	2E-31		0.0355	[0.029-0.042] unit decrease	Affymetrix [19819130] (imputed)	N
666	chr16	10740981	10740982	rs78442819	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16p13.13		rs78442819-?	NR	6E-34				NR [~ 8900000] (imputed)	N
666	chr16	10740981	10740982	rs78442819	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	16p13.13	TEKT5	rs78442819-G	0.807203427	6E-7		1.1216913	[1.07-1.17]	Illumina [10439017] (imputed)	N
666	chr16	10746622	10746624	rs145942932	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p13.13	NR	rs145942932-?	NR	1E-6		0.10076511	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
667	chr16	10750547	10750548	rs2541522	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	16p13.13	NR	rs2541522-?	NR	3E-6	(genus_Phascolarctobacterium)	0.7330638	[0.44-1.03] unit increase	Affymetrix [210924]	N
667	chr16	10756968	10756969	rs2466120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.13		rs2466120-?	NR	4E-9				NR [~ 8900000] (imputed)	N
667	chr16	10774120	10774121	rs2541497	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	16p13.13	TEKT5	rs2541497-?	NR	1E-6		0.53	[0.31-0.75] unit increase	Affymetrix [629686]	N
667	chr16	10803369	10803370	rs11862481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16p13.13		rs11862481-?	NR	8E-9				NR [~ 8900000] (imputed)	N
667	chr16	10811686	10811687	rs1592560	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	16p13.13	TEKT5	rs1592560-C	0.4	1E-7		0.1826	[0.11-0.25] unit decrease	Affymetrix [19941912] (imputed)	N
667	chr16	10856110	10856111	rs2257150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16p13.13		rs2257150-T	NR	3E-11		0.0232	[0.016-0.03] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
667	chr16	10861913	10861914	rs2233541	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.13	FAM18A	rs2233541-?	NR	3E-6	(3-phosphoglyceric acid)	0.23146755	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
667	chr16	10863413	10863414	rs11644019	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs11644019-T	0.13978	1E-13		0.291	[0.21-0.37] unit decrease	Illumina [17926607] (imputed)	N
668	chr16	10945880	10945881	rs8045041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p13.13		rs8045041-A	NR	8E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
668	chr16	10945880	10945881	rs8045041	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs8045041-A	0.825647	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
668	chr16	10948460	10948461	rs199751284	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	16p13.13	NR	rs199751284-?	NR	2E-6		0.1204	[0.071-0.17] unit increase	Illumina [at least 560000] (imputed)	N
668	chr16	10964117	10964118	rs6498114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.13	RP11-876N24.2	rs6498114-G	NR	2E-10		0.021198	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
668	chr16	10964117	10964118	rs6498114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.13	RP11-876N24.2	rs6498114-G	NR	1E-10		0.0213855	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
668	chr16	10964117	10964118	rs6498114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16p13.13	NR	rs6498114-T	0.7674	1E-7		0.0113	[0.0072-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
668	chr16	10964117	10964118	rs6498114	27436580	Cui Q	2016-07-19	Hum Mol Genet	An extended genome-wide association study identifies novel susceptibility loci for nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	1,583 Southern Chinese ancestry cases, 2,979 Southern Chinese ancestry controls	5,463 Southern Chinese ancestry cases, 5,591 Southern Chinese ancestry controls	16p13.13	CIITA	rs6498114-?	0.54	4E-9		1.15	[1.10-1.20]	Illumina [463250]	N
668	chr16	10964117	10964118	rs6498114	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	16p13.13	CIITA	rs6498114-?	0.246	6E-10		1.14		Illumina [139553]	N
668	chr16	10968439	10968440	rs12449199	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12449199-G	0.30658	3E-18		0.2433	[0.19-0.3] unit decrease	Illumina [18012714] (imputed)	N
668	chr16	10968439	10968440	rs12449199	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12449199-G	0.30658	2E-9		0.1674	[0.11-0.22] unit decrease	Illumina [18012714] (imputed)	N
668	chr16	10970475	10970476	rs12596540	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12596540-G	0.2522	2E-11		0.2057	[0.15-0.27] unit increase	Illumina [18012714] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%lymphocyte	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.76613	7E-69		0.4689	[0.42-0.52] unit decrease	Illumina [18380873] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell%T cell	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.76613	3E-70		0.4611	[0.41-0.51] unit decrease	Illumina [18380873] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ T cell Absolute Count	3,580 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.7659199999999999	4E-55		0.4355	[0.38-0.49] unit decrease	Illumina [18377392] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.766	6E-52		0.4286	[0.37-0.48] unit decrease	Illumina [18377359] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %lymphocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.7662	9E-61		0.4525	[0.4-0.51] unit decrease	Illumina [18380839] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD8+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.7662	1E-62		0.4526	[0.4-0.5] unit decrease	Illumina [18380839] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD4+ T cell Absolute Count	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.766	1E-25		0.2926	[0.24-0.35] unit decrease	Illumina [18377359] (imputed)	N
668	chr16	10970901	10970902	rs3087456	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD4+ T cell %lymphocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs3087456-A	0.7662	1E-33		0.3114	[0.26-0.36] unit decrease	Illumina [18380839] (imputed)	N
668	chr16	10973611	10973612	rs72770017	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on HLA DR+ CD4+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs72770017-A	0.77091	6E-10		0.1919	[0.13-0.25] unit decrease	Illumina [18012714] (imputed)	N
668	chr16	10974354	10974355	rs9924520	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs9924520-A	0.77332	9E-13		0.2244	[0.16-0.29] unit decrease	Illumina [17926607] (imputed)	N
668	chr16	10974422	10974423	rs12924236	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12924236-C	0.22634	2E-12		0.2199	[0.16-0.28] unit increase	Illumina [18012714] (imputed)	N
668	chr16	10974422	10974423	rs12924236	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on HLA DR+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12924236-C	0.22634	5E-20		0.2877	[0.23-0.35] unit increase	Illumina [18012714] (imputed)	N
668	chr16	10975310	10975311	rs4781011	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	16p13.13	CIITA	rs4781011-T	NR	3E-6		1.15	[NR]	Illumina [266047]	N
668	chr16	10978884	10978885	rs73499473	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs73499473-T	0.77601	2E-38		0.3801	[0.32-0.44] unit increase	Illumina [18212658] (imputed)	N
668	chr16	10979439	10979440	rs11074934	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs11074934-T	0.21927	2E-23		0.4126	[0.33-0.49] unit decrease	Illumina [16999305] (imputed)	N
668	chr16	10979439	10979440	rs11074934	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs11074934-T	0.2194	1E-17		0.3589	[0.28-0.44] unit decrease	Illumina [16998734] (imputed)	N
668	chr16	10981353	10981354	rs35292035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.13	CIITA, RP11-876N24.2	rs35292035-C	0.2752	2E-14		0.019265955	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
668	chr16	10981353	10981354	rs35292035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p13.13	CIITA, RP11-876N24.2	rs35292035-C	0.275171	5E-14		0.01895853	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
668	chr16	10981517	10981518	rs12325238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs12325238-A	0.306054	3E-16				Affymetrix, Illumina [23467995] (imputed)	N
668	chr16	10981517	10981518	rs12325238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16p13.13	NR	rs12325238-A	0.2654	3E-16		0.017399	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
668	chr16	10981517	10981518	rs12325238	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.13	NR	rs12325238-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
668	chr16	10981517	10981518	rs12325238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.13		rs12325238-?	NR	6E-10				NR [~ 8900000] (imputed)	N
668	chr16	10982606	10982607	rs12598451	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs12598451-A	0.22772	9E-33		0.378	[0.32-0.44] unit decrease	Illumina [17967059] (imputed)	N
668	chr16	10984465	10984466	rs12931265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16p13.13		rs12931265-T	NR	5E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
668	chr16	10986595	10986596	rs11641185	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ CD4+ T cell %T cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs11641185-T	0.77452	5E-32		0.2989	[0.25-0.35] unit decrease	Illumina [18380839] (imputed)	N
668	chr16	11004362	11004363	rs6498126	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs6498126-C	0.6788799999999999	3E-13		0.2112	[0.15-0.27] unit decrease	Illumina [18012789] (imputed)	N
668	chr16	11004904	11004905	rs7192768	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on B cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs7192768-C	0.81326	2E-43		0.4789	[0.41-0.55] unit decrease	Illumina [18012789] (imputed)	N
668	chr16	11005222	11005223	rs58454869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16p13.13		rs58454869-C	NR	3E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
668	chr16	11007192	11007193	rs7404890	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p13.13		rs7404890-A	0.82075	4E-8		0.1788	[0.11-0.24] unit increase	Illumina [18238311] (imputed)	N
669	chr16	11015318	11015319	rs77409432	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16p13.13	NR	rs77409432-A	0.0185	6E-9		0.2585	[0.17-0.35] unit increase	Illumina [~ 10600000] (imputed)	N
669	chr16	11020454	11020455	rs11648656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p13.13	NR	rs11648656-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
669	chr16	11023867	11023868	rs4072864	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p13.13		rs4072864-A	0.204	6E-10				Affymetrix [10369434] (imputed)	N
669	chr16	11038359	11038360	rs8054198	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p13.13	CLEC16A	rs8054198-?	NR	2E-8	(Hispanic)	2.7777777	[1.96-4]	Illumina [at least 5000000] (imputed)	N
669	chr16	11042193	11042194	rs12931878	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	16p13.13	DEXI, CLEC16A	rs12931878-?	NR	5E-8		0.65	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
669	chr16	11043412	11043413	rs7205474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p13.13	CLEC16A	rs7205474-T	NR	1E-10		0.0262969	[0.018-0.034] unit increase	Affymetrix [321788] (imputed)	N
669	chr16	11058752	11058753	rs7188928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.13	CLEC16A	rs7188928-A	NR	5E-10		0.0262825	[0.018-0.035] unit increase	Affymetrix [321016] (imputed)	N
669	chr16	11060150	11060151	rs8059260	29058377	Sanchez-Roige S	2017-10-23	Addict Biol	Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.	Alcohol consumption over the past year	20,328 European ancestry individuals	NA	16p13.13	CLEC16A	rs8059260-G	0.16	2E-6		0.017	[0.0092-0.0248] unit decrease	Illumina [13280794] (imputed)	N
669	chr16	11062935	11062936	rs17229044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p13.13	NR	rs17229044-T	0.210111	2E-16		0.019172	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
669	chr16	11062935	11062936	rs17229044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16p13.13	CLEC16A	rs17229044-T	0.2091	8E-9		0.0255305	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
669	chr16	11070288	11070289	rs17803698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p13.13	CLEC16A	rs17803698-G	NR	8E-9		0.022939	[0.015-0.031] unit increase	Affymetrix [321788] (imputed)	N
669	chr16	11081248	11081249	rs6498142	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	16p13.13	CLEC16A	rs6498142-?	0.83	2E-7		1.56	[1.30-1.85]	Illumina [2057134] (imputed)	N
669	chr16	11099706	11099707	rs7194305	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	16p13.13	NR	rs7194305-A	0.584	2E-15		1.1	[1.07-1.13]	Affymetrix, Illumina [7072771] (imputed)	N
669	chr16	11112111	11112112	rs9937309	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.13	CLEC16A	rs9937309-C	0.2925	2E-8		0.1181	[0.077-0.159] mmHg increase	Affymetrix [NR] (imputed)	N
669	chr16	11114005	11114006	rs2286975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.13	NR	rs2286975-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
669	chr16	11114511	11114512	rs2286974	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16p13.13	CLEC16A	rs2286974-A	NR	4E-9		1.1008366	NR	Affymetrix, Illumina [8278136] (imputed)	N
669	chr16	11125292	11125293	rs17804800	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p13.13	NR	rs17804800-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
669	chr16	11129242	11129243	rs71381188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs71381188-T	0.192666	5E-15				Affymetrix, Illumina [23472807] (imputed)	N
669	chr16	11132632	11132633	rs720130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.13	NR	rs720130-G	0.595407	5E-12		0.00547433	[0.0038-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
669	chr16	11132632	11132633	rs720130	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.13	NR	rs720130-G	0.595407	3E-10		0.00592998	[0.0041-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
670	chr16	11143355	11143355	rs758049676	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	16p13.13	CLEC16A	rs758049676-?	0.432	4E-9		0.005	[0.003-0.007] unit increase	NR [57525634] (imputed)	N
670	chr16	11150247	11150248	rs876476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.13	NR	rs876476-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11150247	11150248	rs876476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.13		rs876476-?	NR	5E-9				NR [~ 8900000] (imputed)	N
670	chr16	11154190	11154190	rs111475485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.13	CLEC16A	rs111475485-AG	NR	3E-9		0.0252567	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
670	chr16	11154190	11154190	rs111475485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.13	CLEC16A	rs111475485-AGG	NR	5E-9		0.025061	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
670	chr16	11156811	11156812	rs71381191	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	16p13.13	NR	rs71381191-?	NR	3E-8		0.11	NR unit increase	Affymetrix [388620]	N
670	chr16	11158884	11158885	rs887864	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	16p13.13	CLEC16A	rs887864-A	0.63	1E-6		1.16	[1.09-1.23]	Affymetrix, Illumina [2217510] (imputed)	N
670	chr16	11160928	11160929	rs8061043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p13.13	CLEC16A, RP11-66H6.3	rs8061043-T	NR	4E-9		0.0267214	[0.018-0.036] unit increase	Affymetrix [321788] (imputed)	N
670	chr16	11160928	11160929	rs8061043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.13		rs8061043-?	NR	6E-13				NR [~ 8900000] (imputed)	N
670	chr16	11161214	11161215	rs34069391	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	16p13.13	CLEC16A	rs34069391-G	0.804	1E-9		1.4084507	[NR]	Illumina [up to 9464381] (imputed)	N
670	chr16	11161407	11161408	rs8061882	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p13.13	CLEC16A	rs8061882-?	NR	3E-7	(subset analysis)			Illumina [130052]	N
670	chr16	11165541	11165542	rs7184615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p13.13		rs7184615-C	NR	6E-76		0.0322	[0.029-0.036] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
670	chr16	11166687	11166688	rs11865121	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	16p13.13	CLEC16A	rs11865121-C	0.69	2E-7		1.15	[1.04-1.25]	Affymetrix, Illumina [~ 2560000] (imputed)	N
670	chr16	11169282	11169283	rs111867993	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	16p13.13		rs111867993-G	0.876226	2E-6		0.0141032	[0.0083-0.0199] unit decrease	Illumina [13900000] (imputed)	N
670	chr16	11169682	11169683	rs725613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs725613-G	0.335954	4E-120				Affymetrix, Illumina [19872809] (imputed)	N
670	chr16	11169682	11169683	rs725613	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p13.13	NR	rs725613-G	0.355982	5E-116		0.047446	[0.043-0.052] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
670	chr16	11169682	11169683	rs725613	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	16p13.13	CLEC16A	rs725613-T	0.65	4E-13		1.2	[1.14-1.26]	Affymetrix, Illumina [7891602] (imputed)	N
670	chr16	11174364	11174365	rs9652601	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	16p13.13		rs9652601-A	NR	7E-24		0.239954	[0.19-0.29] unit decrease	NR [5054572] (imputed)	N
670	chr16	11174364	11174365	rs9652601	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	16p13.13	CLEC16A	rs9652601-?	NR	6E-13		1.1904762	[1.14-1.25]	Illumina [at least 5000000] (imputed)	N
670	chr16	11174364	11174365	rs9652601	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	16p13.13	CIITA, SOCS1	rs9652601-?	0.332	4E-7	(EA)	1.17	[NR]	NR [6344733] (imputed)	N
670	chr16	11174364	11174365	rs9652601	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	16p13.13	CIITA, SOCS1, CLEC16A	rs9652601-G		7E-17		1.21	[1.15-1.26]	Illumina [644674]	N
670	chr16	11174651	11174652	rs2041670	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p13.13	CLEC16A	rs2041670-?	NR	2E-16		1.1764705	[1.12-1.22]	Illumina [at least 5000000] (imputed)	N
670	chr16	11177800	11177801	rs7200786	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	16p13.13	CIITA, SOCS1	rs7200786-A		2E-8		1.15	[NR]	Illumina [> 644674] (imputed)	N
670	chr16	11177800	11177801	rs7200786	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16p13.13	CLEC16A	rs7200786-A	NR	9E-17		1.15	[1.13-1.16]	Illumina [465434]	N
670	chr16	11177823	11177824	rs12708715	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		SOCS1, CLEC16A, PRM1, PRM2	rs12708715-C	0.68	2E-13	(conditioned on rs1646019)	1.29	[1.21-1.38]	Illumina [237619] (imputed)	N
670	chr16	11179872	11179873	rs12708716	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	16p13.13	CLEC16A	rs12708716-G	NR	5E-14		1.2	[NR]	Affymetrix, Illumina [NR]	N
670	chr16	11179872	11179873	rs12708716	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	16p13.13	CLEC16A	rs12708716-?	NR	2E-16				Affymetrix, Illumina [841622] (imputed)	N
670	chr16	11179872	11179873	rs12708716	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	16p13.13	CLEC16A	rs12708716-G	NR	7E-13				Affymetrix [up to 335565]	N
670	chr16	11179872	11179873	rs12708716	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 1 diabetes	1,963 European ancestry cases, 2,938 European ancestry controls	(see Todd 2007)	16p13.13	KIAA0350	rs12708716-A	0.65	5E-7		1.19	[0.97-1.45]	Affymetrix [469557]	N
670	chr16	11179872	11179873	rs12708716	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	16p13.13	KIAA0350	rs12708716-A	0.68	3E-18		1.23	[1.16-1.30]	Affymetrix [NR]	N
670	chr16	11187782	11187783	rs12924729	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	16p13.13	SOCS1, CLEC16A, DEXI	rs12924729-G	0.67	2E-14		1.31	NR	Illumina [1143634] (imputed)	N
670	chr16	11187782	11187783	rs12924729	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	16p13.13	CLEC16A	rs12924729-G	0.68	3E-12		1.29	[1.20-1.38]	Illumina [507467]	N
670	chr16	11188929	11188930	rs12919083	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16p13.13		rs12919083-C	NR	4E-26		0.224808	[0.18-0.27] unit decrease	NR [2787054] (imputed)	N
670	chr16	11188929	11188930	rs12919083	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	16p13.13	NR	rs12919083-A	0.762799	3E-11		0.037566	[0.026-0.049] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
670	chr16	11189255	11189256	rs7205916	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16p13.13		rs7205916-A	NR	2E-6		0.248323	[0.15-0.35] unit decrease	NR [5275424] (imputed)	N
670	chr16	11189616	11189617	rs35099084	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	16p13.13	CLEC16A	rs35099084-T	0.22	2E-12		0.72	[0.65-0.79]	Illumina [11310926] (imputed)	N
670	chr16	11189616	11189617	rs35099084	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	16p13.13	CLEC16A	rs35099084-C	0.222	3E-9		0.71	[0.64-0.80]	Illumina [11310926] (imputed)	N
670	chr16	11189887	11189888	rs12599402	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	16p13.13	NR	rs12599402-A	NR	2E-7				Illumina [NR] (imputed)	N
670	chr16	11189887	11189888	rs12599402	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p13.13	CLEC16A	rs12599402-A	0.56	5E-7		1.2821		Illumina [2100739] (imputed)	N
670	chr16	11190035	11190035	rs34361002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16p13.13		rs34361002-TAA	NR	4E-10		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
670	chr16	11190035	11190035	rs34361002	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16p13.13	CLEC16A	rs34361002-T	0.624	1E-17		1.14	[1.11-1.17]	Illumina [11270530] (imputed)	N
670	chr16	11194079	11194080	rs3862469	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	16p13.13	NR	rs3862469-t	0.313	4E-12		0.93	[0.91-0.95]	Affymetrix, Illumina [16201029] (imputed)	N
670	chr16	11194079	11194080	rs3862469	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	16p13.13	CIITA, DEXI, CLEC16A	rs3862469-C	NR	2E-7		1.2137249		Illumina [1233578] (imputed)	N
670	chr16	11194770	11194771	rs12927355	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	16p13.13	DEXI	rs12927355-C	0.68	3E-22		1.2195122		Illumina [135870]	N
670	chr16	11194770	11194771	rs12927355	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16p13.13	CLEC16A	rs12927355-G	0.69	6E-46		1.2		Illumina [161311]	N
670	chr16	11198834	11198835	rs11642631	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p13.13	CLEC16A	rs11642631-T	0.5592	4E-9		0.102	[0.068-0.136] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
670	chr16	11198937	11198938	rs34972832	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	16p13.13	CLEC16A	rs34972832-A	0.19	2E-8		1.24	[1.15-1.34]	Illumina [> 10000000] (imputed)	N
670	chr16	11198937	11198938	rs34972832	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	16p13.13	CLEC16A	rs34972832-A	0.19	8E-7		1.16	[1.09-1.23]	Illumina [> 10000000] (imputed)	N
670	chr16	11199446	11199447	rs6498160	28445677	Steri M	2017-04-27	N Engl J Med	Overexpression of the Cytokine BAFF and Autoimmunity Risk.	Multiple sclerosis	2,273 Sardinian cases, 2,148 Sardinian controls	6,840 European ancestry cases, 661 Sardinian cases, 3,176 cases, 6,044 European ancestry controls, 1,244 Sardinian controls, 2,958 controls	16p13.13	CLEC16A	rs6498160-T	0.36	7E-8		1.27		Affymetrix [~ 12200000] (imputed)	N
670	chr16	11199979	11199980	rs17806299	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	16p13.13	CLEC16A, DEXI, SOCS1	rs17806299-G	0.8	3E-10		1.098901	[1.06-1.14]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
670	chr16	11199979	11199980	rs17806299	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	16p13.13	CLEC16A, DEXI, SOCS1	rs17806299-A	0.2	2E-10		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
670	chr16	11200797	11200798	rs741172	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	16p13.13	CLEC16A	rs741172-?	0.69	2E-16		1.2268434		Illumina [252970]	N
670	chr16	11210414	11210415	rs9923856	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	16p13.13	CLEC16A	rs9923856-?	NR	6E-7		0.208	[0.13-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr16	11210414	11210415	rs9923856	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	16p13.13	CLEC16A	rs9923856-A	0.781	6E-6		1.17	[1.09-1.25]	Illumina [606164]	N
670	chr16	11210446	11210447	rs12935413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16p13.13	CLEC16A	rs12935413-A	0.3529	6E-39		0.04884417	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
670	chr16	11210446	11210447	rs12935413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p13.13	CLEC16A	rs12935413-A	0.3529	5E-38		0.04820378	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
670	chr16	11210830	11210831	rs7186106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p13.13		rs7186106-G	0.646	6E-35				Affymetrix [10369434] (imputed)	N
670	chr16	11212680	11212681	rs9927527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.13	CLEC16A	rs9927527-G	0.349517	3E-9		0.0202741	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr16	11212680	11212681	rs9927527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.13	CLEC16A	rs9927527-G	0.349536	4E-10		0.021289198	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr16	11213020	11213021	rs35441874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	16p13.13		rs35441874-A	NR	9E-16		0.087	[0.066-0.108] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
670	chr16	11213020	11213021	rs35441874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	16p13.13		rs35441874-A	NR	1E-9		0.0688	[0.047-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
670	chr16	11213020	11213021	rs35441874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	16p13.13		rs35441874-A	NR	3E-16		0.0823	[0.063-0.102] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
670	chr16	11213020	11213021	rs35441874	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	16p13.13	CLEC16A	rs35441874-A	0.247084124158008	2E-27		0.082469344	[0.068-0.097] unit decrease	Affymetrix [35186738] (imputed)	N
670	chr16	11213020	11213021	rs35441874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p13.13	CLEC16A	rs35441874-A	0.247641	3E-11		0.01714678	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
670	chr16	11213020	11213021	rs35441874	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	16p13.13	CLEC16A	rs35441874-T	0.754202	7E-42		1.0995073	1.08453690782996-1.11468434713069]	NR [9572556] (imputed)	N
670	chr16	11213020	11213021	rs35441874	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	16p13.13	CLEC16A, SOCS1, TNP2, PRM3, PRM2, PRM1	rs35441874-T	0.7529	2E-33		1.0940201	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
670	chr16	11213020	11213021	rs35441874	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	16p13.13	NR	rs35441874-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11213020	11213021	rs35441874	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	16p13.13	CIITA, CLEC16A, DEXI	rs35441874-T	0.75274	1E-30		1.0866435	[1.07-1.1]	Affymetrix [8274727] (imputed)	N
670	chr16	11213020	11213021	rs35441874	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	16p13.13	CLEC16A	rs35441874-A	0.246038	4E-9		0.077133745	[0.052-0.103] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr16	11213020	11213021	rs35441874	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	16p13.13	CLEC16A	rs35441874-A	0.244249	9E-16		0.08478937	[0.064-0.105] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr16	11213020	11213021	rs35441874	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	16p13.13	CLEC16A	rs35441874-T	0.748	4E-7		1.06	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
670	chr16	11213020	11213021	rs35441874	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	16p13.13	CLEC16A	rs35441874-?	NR	1E-19		1.076	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
670	chr16	11213020	11213021	rs35441874	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	16p13.13	CLEC16A	rs35441874-T	NR	4E-34		1.1	[1.08-1.12]	Affymetrix [9000000] (imputed)	N
670	chr16	11213020	11213021	rs35441874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	16p13.13		rs35441874-?	NR	1E-44				NR [~ 8900000] (imputed)	N
670	chr16	11215423	11215424	rs35032408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.13	CLEC16A	rs35032408-G	0.215308	2E-13		0.028451744	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr16	11215423	11215424	rs35032408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.13	CLEC16A	rs35032408-G	0.215326	6E-14		0.029092094	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr16	11215423	11215424	rs35032408	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	16p13.13	CLEC16A, CIITA, RMI2	rs35032408-T	0.785	5E-14		1.152	[1.111-1.195]	Affymetrix [10894596] (imputed)	N
670	chr16	11215423	11215424	rs35032408	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	16p13.13	CLEC16A, CIITA, RMI2	rs35032408-T	0.785	1E-8		1.073	[1.048-1.100]	Affymetrix [10894596] (imputed)	N
670	chr16	11219040	11219041	rs12935657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	16p13.13		rs12935657-A	NR	3E-16		0.0722	[0.055-0.089] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
670	chr16	11219040	11219041	rs12935657	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	16p13.13	CLEC16A	rs12935657-G	0.76	8E-52				NR [> 9500000] (imputed)	N
670	chr16	11219040	11219041	rs12935657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p13.13	NR	rs12935657-?	NR	1E-25				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11219040	11219041	rs12935657	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	16p13.13	NR	rs12935657-G	0.7558	1E-38		1.0955303	[1.08-1.11]	Affymetrix [15688218] (imputed)	N
670	chr16	11219040	11219041	rs12935657	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	16p13.13	CLEC16A	rs12935657-A	0.2442	6E-33				Affymetrix [15688218] (imputed)	N
670	chr16	11219040	11219041	rs12935657	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	16p13.13	CLEC16A	rs12935657-G	0.7569	8E-15		1.1082788	[1.08-1.14]	Affymetrix [15688218] (imputed)	N
670	chr16	11219040	11219041	rs12935657	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	16p13.13	NR	rs12935657-G	0.7558	6E-45		1.0945709	[1.08-1.11]	Affymetrix [15688218] (imputed)	N
670	chr16	11219040	11219041	rs12935657	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	16p13.13	CLEC16A	rs12935657-G	0.749	2E-7		1.062	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
670	chr16	11219040	11219041	rs12935657	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	16p13.13	CLEC16A	rs12935657-?	NR	1E-49		1.133	[1.12-1.15]	Affymetrix [9000000] (imputed)	N
670	chr16	11219040	11219041	rs12935657	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	16p13.13	CLEC16A	rs12935657-G	NR	7E-34		1.1	[1.08-1.12]	Affymetrix [9000000] (imputed)	N
670	chr16	11219719	11219720	rs12924112	29904099	Kottyan LC	2018-06-08	Genes Immun	Genetic variants at the 16p13 locus confer risk for eosinophilic esophagitis.	Eosinophilic esophagitis	1,210 European ancestry cases, 3,734 European ancestry controls	NA	16p13.13	DEXI, CLEC16A	rs12924112-?	0.64	1E-7		1.310616		Illumina [79405]	N
670	chr16	11222237	11222238	rs78394940	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	CLEC16A	rs78394940-A	0.063	9E-7	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
670	chr16	11222237	11222238	rs78394940	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	CLEC16A	rs78394940-A	0.063	2E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
670	chr16	11223453	11223454	rs11645657	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	16p13.13	CLEC16A	rs11645657-C	0.4397	1E-14		1.14	[1.104-1.177]	Affymetrix [15688218] (imputed)	N
670	chr16	11223453	11223454	rs11645657	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	16p13.13	CLEC16A, DEXI	rs11645657-?	NR	7E-17		1.09	[1.07-1.11]	Affymetrix [74888535] (imputed)	N
670	chr16	11224965	11224966	rs36045143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p13.13	NR	rs36045143-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11224965	11224966	rs36045143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	16p13.13		rs36045143-?	NR	9E-28				NR [~ 8900000] (imputed)	N
670	chr16	11224965	11224966	rs36045143	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	16p13.13	CLEC16A, DEXI	rs36045143-?	NR	2E-21		1.0752687		NR [74888535] (imputed)	N
670	chr16	11228711	11228712	rs62026376	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	16p13.13	CLEC16A	rs62026376-C	0.72	1E-8		1.17	[1.11-1.24]	Illumina [up to 4972397] (imputed)	N
670	chr16	11229127	11229128	rs62026377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.13		rs62026377-?	NR	1E-118				NR [~ 8900000] (imputed)	N
670	chr16	11229127	11229128	rs62026377	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	16p13.13	CLEC16A	rs62026377-?		9E-6		0.131	[0.074-0.188] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
670	chr16	11229588	11229589	rs2041733	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	16p13.13		rs2041733-C	0.5358	8E-22		0.9		Affymetrix, Illumina [9397031] (imputed)	N
670	chr16	11229588	11229589	rs2041733	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	16p13.13		rs2041733-?	NR	2E-20		0.91	[0.9-0.93]	Illumina [5170515] (imputed)	N
670	chr16	11229588	11229589	rs2041733	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	16p13.13	CLEC16A	rs2041733-T	0.447	2E-13		0.031	[0.023-0.039] unit decrease	NR [NR] (imputed)	N
670	chr16	11229588	11229589	rs2041733	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	16p13.13	CLEC16A	rs2041733-T	0.447	2E-13		0.031	[0.023-0.039] unit decrease	NR [7647814] (imputed)	N
670	chr16	11229588	11229589	rs2041733	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	16p13.13	CLEC16A, DEXI	rs2041733-T	NR	3E-11	(EA, fixed effects)	1.08	[1.06-1.11]	Illumina [15539996] (imputed)	N
670	chr16	11229588	11229589	rs2041733	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	16p13.13	CLEC16A, DEXI	rs2041733-A	0.4528	3E-15		1.23	[1.17-1.29]	Illumina [128830]	N
670	chr16	11230702	11230703	rs7203459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	16p13.13	NR	rs7203459-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11230702	11230703	rs7203459	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	16p13.13	CLEC16A	rs7203459-T	0.7544	4E-18		1.1627907	[1.12-1.2]	Affymetrix [33771858] (imputed)	N
670	chr16	11230702	11230703	rs7203459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16p13.13	CLEC16A	rs7203459-C	0.2458	5E-31		0.04813	[0.04-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
670	chr16	11230702	11230703	rs7203459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16p13.13	CLEC16A	rs7203459-C	0.2459	6E-34		0.05025668	[0.042-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
670	chr16	11230702	11230703	rs7203459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16p13.13	CLEC16A	rs7203459-C	0.2457	7E-33		0.04966455	[0.042-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
670	chr16	11230702	11230703	rs7203459	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	16p13.13	CLEC16A	rs7203459-?	NR	4E-15		1.092	[1.068-1.117]	Illumina [13747813] (imputed)	N
670	chr16	11230702	11230703	rs7203459	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	16p13.13	CLEC16A	rs7203459-C	0.2674	2E-7		0.0706	[0.044-0.097] unit decrease	Illumina [2400000] (imputed)	N
670	chr16	11235129	11235130	rs6498168	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	16p13.13	CLEC16A	rs6498168-T		1E-9		1.23	[1.17-1.29]	Illumina [at least 8143088] (imputed)	N
670	chr16	11238782	11238783	rs2903692	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Carotid artery internal diameter	3,681 individuals	NA	16p13.13	CLEC16A	rs2903692-A	0.39	4E-7		0.011	[0.0066-0.0154] unit decrease	Illumina [101597]	N
670	chr16	11238782	11238783	rs2903692	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Carotid artery external diameter	3,681 individuals	NA	16p13.13	CLEC16A	rs2903692-A	0.39	4E-6		0.009	[0.0051-0.0129] unit decrease	Illumina [101597]	N
670	chr16	11238782	11238783	rs2903692	17632545	Hakonarson H	2007-07-15	Nature	A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene.	Type 1 diabetes	467 European ancestry trios, 561 European ancestry cases, 1,143 European ancestry controls	390 European ancestry trios, 1,333 European ancestry cases from 549 families	16p13.13	KIAA0350	rs2903692-G	0.62	7E-11		1.54	[1.32-1.79]	Illumina [543071]	N
670	chr16	11243454	11243455	rs34720006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	16p13.13		rs34720006-A	NR	2E-11		0.1614	[0.11-0.21] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
670	chr16	11243454	11243455	rs34720006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16p13.13		rs34720006-?	NR	1E-8				NR [~ 8900000] (imputed)	N
670	chr16	11244657	11244658	rs7206912	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p13.13	NR	rs7206912-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11249328	11249329	rs6498169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p13.13	NR	rs6498169-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
670	chr16	11249328	11249329	rs6498169	17660530	Hafler DA	2007-07-29	N Engl J Med	Risk alleles for multiple sclerosis identified by a genomewide study.	Multiple sclerosis	931 European ancestry trios, 2,431 European ancestry controls	609 European ancestry trios, 2,322 European ancestry cases, 2,987 European ancestry controls	16p13.13	KIAA0350	rs6498169-G	0.37	4E-6		1.14	[1.08-1.21]	Affymetrix [334923]	N
670	chr16	11250412	11250413	rs7189563	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p13.13	CLEC16A	rs7189563-?		8E-6				Illumina [4322238] (imputed)	N
670	chr16	11250412	11250413	rs7189563	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p13.13	CLEC16A	rs7189563-?		8E-6				Illumina [4322238] (imputed)	N
670	chr16	11253833	11253834	rs12925631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p13.13	NR	rs12925631-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
671	chr16	11277357	11277358	rs11644510	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	16p13.13	RMI2, CLEC16A	rs11644510-C	0.6291	2E-17		1.0752687	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
671	chr16	11277357	11277358	rs11644510	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p13.13	CLEC16A, RMI2	rs11644510-C	0.64	6E-38		1.072	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
671	chr16	11277357	11277358	rs11644510	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	16p13.13	CLEC16A, SOCS1	rs11644510-?	NR	2E-16		1.0706638	[1.05-1.09]	Illumina [12845910] (imputed)	N
671	chr16	11279912	11279913	rs193759	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16p13.13	CLEC16A, SOCS1	rs193759-A	0.67	8E-10		6.14	z-score increase	Affymetrix [4314223] (imputed)	N
671	chr16	11281217	11281218	rs248831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p13.13		rs248831-A	NR	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
671	chr16	11281217	11281218	rs248831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p13.13		rs248831-A	0.26394	2E-12		0.018035555	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11281217	11281218	rs248831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.13		rs248831-?	NR	1E-7				NR [~ 8900000] (imputed)	N
671	chr16	11288805	11288806	rs4780346	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16p13.13	CLEC16A	rs4780346-A	0.25	4E-10	(conditioned on rs12927355)	1.09		Illumina [161311]	N
671	chr16	11304319	11304320	rs79156681	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p13.13	NR	rs79156681-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
671	chr16	11313050	11313051	rs7199390	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	16p13.13	C16orf75	rs7199390-T	0.1	2E-6	(Age 8)	0.19	[0.11-0.27] unit increase	Illumina [2293137] (imputed)	N
671	chr16	11319356	11319357	rs11649613	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p13.13	RP11-396B14.2	rs11649613-?	NR	3E-10	(subset analysis)			Illumina [130052]	N
671	chr16	11320661	11320662	rs8046011	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p13.13		rs8046011-G	0.285	1E-21				Affymetrix [10369434] (imputed)	N
671	chr16	11320661	11320662	rs8046011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.714928	9E-22		0.024527682	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11320661	11320662	rs8046011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.714929	3E-24		0.026001204	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11320661	11320662	rs8046011	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	16p13.13	intergenic	rs8046011-G	0.286	4E-9		1.15	[1.10-1.21]	Affymetrix, Illumina [up to 37123566] (imputed)	N
671	chr16	11320661	11320662	rs8046011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.7158	1E-22		0.03927216	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
671	chr16	11320661	11320662	rs8046011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.7157	8E-21		0.03759039	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr16	11320661	11320662	rs8046011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.7157	3E-20		0.03684072	[0.029-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
671	chr16	11320661	11320662	rs8046011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.7156	3E-20		0.03697699	[0.029-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
671	chr16	11320661	11320662	rs8046011	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p13.13	RP11-396B14.2	rs8046011-A	0.7157	7E-22		0.03844744	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
671	chr16	11324736	11324737	rs1640925	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16p13.13		rs1640925-?	NR	8E-7		1.07481	[1.05-1.1]	NR [685523]	N
671	chr16	11340520	11340521	rs151770	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p13.13	NR	rs151770-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
671	chr16	11344902	11344903	rs2021511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.13	RMI2	rs2021511-T	0.277126	2E-21		0.023795607	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11344902	11344903	rs2021511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.13	RMI2	rs2021511-T	0.277133	2E-22		0.024365108	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11347857	11347858	rs4780355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p13.13	RMI2	rs4780355-C	0.291675	7E-17		0.020645926	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
671	chr16	11347857	11347858	rs4780355	22482804	Ellinghaus D	2012-04-06	Am J Hum Genet	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	16p13.13	SOCS1	rs4780355-T	NR	1E-13	(same-effect analysis)	1.16	[NR]	Affymetrix, Illumina, Perlegen [1116213] (imputed)	N
671	chr16	11348705	11348706	rs11549428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.13		rs11549428-?	NR	3E-13				NR [~ 8900000] (imputed)	N
671	chr16	11349677	11349678	rs243332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p13.13		rs243332-T	NR	3E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
671	chr16	11349677	11349678	rs243332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.13	SOCS1, RMI2	rs243332-T	0.277426	1E-14		0.019198518	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11349677	11349678	rs243332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.13	SOCS1, RMI2	rs243332-T	0.277438	6E-16		0.020111118	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11351210	11351211	rs193778	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	16p13.13	DEXI	rs193778-G	0.25	4E-10		1.14		Illumina [135870]	N
671	chr16	11354090	11354091	rs413024	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	16p13.13	NR	rs413024-A		4E-8		1.06		NR [8016731] (imputed)	N
671	chr16	11354090	11354091	rs413024	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	16p13.13	NR	rs413024-T		2E-8		1.31	[1.19-1.44]	Illumina [109812]	N
671	chr16	11359152	11359153	rs77804393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	16p13.13		rs77804393-?	NR	2E-9				NR [~ 8900000] (imputed)	N
671	chr16	11359679	11359680	rs1646019	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		SOCS1, CLEC16A, PRM1, PRM2	rs1646019-G	0.71	7E-15		1.31	[1.23-141]	Illumina [237619] (imputed)	N
671	chr16	11364078	11364079	rs416603	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	16p13.13	TNP2, PRM3, C16orf75	rs416603-T	0.44	3E-6		1.06	[1.01-1.12]	Affymetrix [up to 335565]	N
671	chr16	11365415	11365416	rs431918	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p13.13		rs431918-G	0.169	4E-14				Affymetrix [10369434] (imputed)	N
671	chr16	11365499	11365500	rs367569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p13.13	RMI2	rs367569-T	0.282558	2E-18		0.021870624	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr16	11365499	11365500	rs367569	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p13.13	TNP2	rs367569-?	NR	5E-14	(subset analysis)			Illumina [130052]	N
671	chr16	11365499	11365500	rs367569	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	16p13.13	PRM3, SOCS1	rs367569-C	NR	3E-7		1.128	NR	Illumina [up to 11532644] (imputed)	N
671	chr16	11365499	11365500	rs367569	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	16p13.13	PRM3, SOCS1	rs367569-C	0.709	5E-8		1.13		Illumina [111236] (imputed)	N
671	chr16	11373300	11373301	rs7198849	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	16p13.13	PRM2	rs7198849-A	0.27	7E-6				Illumina [905781]	N
671	chr16	11373319	11373320	rs529866	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16p13.13	SOCS1, TNP2, PRM3, PRM2, PRM1, RMI2, LITAF, CTD-3088G3.8	rs529866-?		1E-6				Illumina [9725440] (imputed)	N
671	chr16	11373319	11373320	rs529866	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	16p13.13	SOCS1, TNP2, PRM3, PRM2, PRM1, RMI2, LITAF, CTD-3088G3.8	rs529866-?		1E-7				Illumina [9560910] (imputed)	N
671	chr16	11373319	11373320	rs529866	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p13.13	LITAF, RMI2, SOCS1	rs529866-C	0.803	2E-16		1.124	[1.085-1.166]	Affymetrix, Illumina [1230000] (imputed)	N
671	chr16	11373404	11373405	rs423674	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p13.13	NR	rs423674-C	0.8	2E-10	(EA)	1.0876718		Affymetrix, Illumina [~ 9000000] (imputed)	N
671	chr16	11373404	11373405	rs423674	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p13.13	NR	rs423674-C	0.8	2E-14	(EA)	1.1317871	[1.1-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
671	chr16	11373796	11373797	rs80073729	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	16p13.13	SOCS1, CLEC16A, PRM1, PRM2	rs80073729-A	0.004	3E-8	(conditioned on rs12708715 & rs1646019)	2.96	[2.02-4.33]	Illumina [237619] (imputed)	N
671	chr16	11374865	11374866	rs737008	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	PRM1	rs737008-A	0.352	8E-7	(Protein deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
671	chr16	11374865	11374866	rs737008	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	PRM1	rs737008-A	0.352	8E-7	(Protein )	0.04	[NR] kg/y increase	Illumina [899892]	N
671	chr16	11374865	11374866	rs737008	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.13	PRM1	rs737008-A	0.352	1E-6	(Fat free mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
671	chr16	11377290	11377291	rs7201894	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.13	NR	rs7201894-T	0.01045	4E-9	(ALDH6A1)	2.82	NR unit decrease	Illumina [1671387] (imputed)	N
671	chr16	11377290	11377291	rs7201894	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.13	NR	rs7201894-T	0.01045	3E-8	(SPRYD4)	0.1523	NR unit decrease	Illumina [1671387] (imputed)	N
671	chr16	11380593	11380594	rs12921562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs12921562-T	0.174342	3E-10				Affymetrix, Illumina [21126107] (imputed)	N
671	chr16	11380593	11380594	rs12921562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16p13.13	NR	rs12921562-T	0.208661	4E-12		0.017129	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
671	chr16	11386959	11386960	rs117096873	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	16p13.13	TNP2, PRM3, PRM2, PRM1, SOCS1	rs117096873-C	0.974	2E-6		0.129	[0.076-0.182] unit decrease	Illumina [6150213] (imputed)	N
672	chr16	11403892	11403893	rs12928822	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	16p13.13	CLEC16A, CIITA, SOCS1	rs12928822-?	0.84	3E-8		1.16	[1.10-1.22]	Illumina [292387]	N
672	chr16	11406802	11406803	rs7191700	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	16p13.13	TNP2, PRM3, PRM2, PRM1, C16orf75	rs7191700-C	0.67	6E-7		1.15	[NR]	Affymetrix, Illumina [2529394]	N
672	chr16	11412925	11412926	rs34947566	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16p13.13	PRM1	rs34947566-C	NR	1E-23		1.1463	NR	Affymetrix, Illumina [8278136] (imputed)	N
672	chr16	11416838	11416839	rs9921338	25881214	Shah AA	2015-02-27	Heart Surg Forum	Genetic variants associated with vein graft stenosis after coronary artery bypass grafting.	Vein graft stenosis in coronary artery bypass grafting	361 European ancestry cases, 160 European ancestry controls	NA	16p13.13	RMI2	rs9921338-A	0.27	6E-6				Illumina [905781]	N
672	chr16	11435989	11435990	rs6498184	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16p13.13	RMI2	rs6498184-G	0.82	7E-18		1.15		Illumina [161311]	N
672	chr16	11437606	11437607	rs9926463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p13.13	RP11-485G7.5, RMI2	rs9926463-C	0.715835	3E-15		0.019767644	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr16	11437606	11437607	rs9926463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs9926463-C	0.706596	2E-24				Affymetrix, Illumina [24588908] (imputed)	N
672	chr16	11437778	11437779	rs9936459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p13.13	NR	rs9936459-T	0.700559	1E-25		0.020943	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
672	chr16	11439795	11439795	rs761132151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p13.13	NR	rs761132151-D	0.672544	3E-10		0.013796	[0.0095-0.0181] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
672	chr16	11443182	11443183	rs11643024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p13.13		rs11643024-G	NR	5E-12		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
672	chr16	11443182	11443183	rs11643024	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16p13.13	RMI2	rs11643024-A	0.3057	8E-10		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.13	RMI2	rs11643024-G	0.691895	6E-9		0.01399182	[0.0093-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.13	RMI2	rs11643024-G	0.691861	7E-44		0.033602294	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p13.13	RMI2	rs11643024-G	0.691787	2E-12		0.0169243	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.13	RMI2	rs11643024-A	0.691793	3E-10		0.0151657	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.13	NR	rs11643024-G	0.690152	1E-18				Affymetrix, Illumina [24246363] (imputed)	N
672	chr16	11443182	11443183	rs11643024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p13.13	NR	rs11643024-G	0.691471	7E-18		0.016981	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
672	chr16	11443182	11443183	rs11643024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.13		rs11643024-?	NR	6E-8				NR [~ 8900000] (imputed)	N
672	chr16	11452541	11452542	rs77061563	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	16p13.13	LOC388210	rs77061563-C	0.617	6E-15		1.1904762	[NR]	Illumina [4577171] (imputed)	N
672	chr16	11454649	11454650	rs7188861	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	16p13.13	RMI2	rs7188861-A	0.2	7E-9		0.044	[0.028-0.06] unit increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
672	chr16	11455992	11455993	rs2113260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p13.13		rs2113260-C	NR	5E-15		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
672	chr16	11458470	11458471	rs8061370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	16p13.13		rs8061370-?	NR	3E-8				NR [~ 8900000] (imputed)	N
672	chr16	11460479	11460480	rs4781072	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16p13.13	CTD-3088G3.8	rs4781072-T	0.7638	7E-10		0.0262749	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
672	chr16	11462403	11462404	rs78013006	33574088	Mocci E	2021-02-11	Cancer Res	Smoking modifies pancreatic cancer risk loci on 2q21.3.	Pancreatic ductal adenocarcinoma x smoking interaction	7,937  European ancestry cases, 11,774 European ancestry controls	NA	16p13.13	LOC105371082	rs78013006-G	NR	4E-6				Illumina [6769447] (imputed)	N
672	chr16	11462463	11462464	rs34966720	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 sp003538135 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.13		rs34966720-C	0.453803	2E-8		0.0829443	[0.054-0.112] unit decrease	Illumina [7980478] (imputed)	N
672	chr16	11462463	11462464	rs34966720	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 sp003514385 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.13		rs34966720-C	0.453803	2E-8		0.135449	[0.088-0.183] unit decrease	Illumina [7980478] (imputed)	N
672	chr16	11462463	11462464	rs34966720	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 sp002451755 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.13		rs34966720-C	0.453803	3E-9		0.106941	[0.072-0.142] unit decrease	Illumina [7980478] (imputed)	N
672	chr16	11462463	11462464	rs34966720	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 sp002438685 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.13		rs34966720-C	0.453803	2E-8		0.099372	[0.064-0.134] unit decrease	Illumina [7980478] (imputed)	N
672	chr16	11462463	11462464	rs34966720	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 abundance in stool	5,959 Finnish ancestry individuals	NA	16p13.13		rs34966720-C	0.453803	3E-10		0.139812	[0.096-0.183] unit decrease	Illumina [7980478] (imputed)	N
672	chr16	11467776	11467777	rs35578928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16p13.13	CTD-3088G3.8	rs35578928-A	0.2271	1E-10		0.02794156	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
672	chr16	11471413	11471414	rs11074967	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	16p13.13	PRM1, RMI2	rs11074967-?	0.58	2E-7	(additive model)	1.1764705	[1.10-1.25]	Illumina [123003]	N
672	chr16	11472947	11472949	rs539069976	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.13	CTD-3088G3.8	rs539069976-CCT	0.9908	6E-6		0.182	[0.1-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
672	chr16	11475575	11475576	rs11864333	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and type 2 diabetes (pleiotropy)	49,192 individuals	NA	16p13.13	PRM1	rs11864333-?	NR	8E-6			[1.0444-1.1097]	NR [2426886]	N
672	chr16	11478973	11478974	rs12446034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.13		rs12446034-?	NR	4E-8				NR [~ 8900000] (imputed)	N
672	chr16	11491006	11491007	rs12596613	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p13.13	RMI2, LITAF	rs12596613-C	0.67	6E-9		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
673	chr16	11536768	11536769	rs116544709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Substance dependence	868 European ancestry cases, 482,988 European ancestry controls, 118 East Asian ancestry cases, 178,608 East Asian ancestry controls	NA	16p13.13		rs116544709-T	NR	2E-8		4.6085	[2.99-6.22] unit increase	Affymetrix, Illumina [25844850] (imputed)	N
673	chr16	11536768	11536769	rs116544709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Substance dependence	118 East Asian ancestry cases, 178,608 East Asian ancestry controls	NA	16p13.13		rs116544709-T	0.013408507	2E-8		4.6084805	[2.99-6.22] unit increase	Illumina [13429980] (imputed)	N
673	chr16	11542893	11542894	rs4467099	25705159	Hong Y	2014-12-31	Genomics Inform	Genome-wide association study of hepatitis in korean populations.	Hepatitis	1,500 Korean ancestry cases, 1,500 Korean ancestry controls	NA	16p13.13	intergenic	rs4467099-A	NR	6E-13		1.09	[NR]	NR [352000]	N
673	chr16	11551901	11551902	rs78847175	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16p13.13	NR	rs78847175-?	NR	5E-8				Illumina [7760689] (imputed)	N
673	chr16	11562797	11562798	rs551107164	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16p13.13	AK126539	rs551107164-G	0.01	8E-8	(African American)	1.41	[0.9-1.92] unit increase	Illumina [up to 13042663] (imputed)	N
673	chr16	11565011	11565012	rs4444359	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	16p13.13	NR	rs4444359-A	0.2004	2E-7		0.1991	[0.12-0.27] unit decrease	Illumina [10677593] (imputed)	N
673	chr16	11624487	11624488	rs35555135	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.13	CTD-3088G3.8	rs35555135-A	NR	5E-10		0.0186118	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11624487	11624488	rs35555135	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.13	CTD-3088G3.8	rs35555135-A	NR	9E-10		0.0182991	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11631567	11631568	rs34318965	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16p13.13	intergenic	rs34318965-T	0.7126	8E-9		0.0169	[0.011-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
673	chr16	11632803	11632804	rs62022813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.13	NR	rs62022813-G	NR	4E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
673	chr16	11632803	11632804	rs62022813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p13.13	NR	rs62022813-G	NR	8E-18		0.0226	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
673	chr16	11633026	11633027	rs9932957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16p13.13		rs9932957-?	NR	1E-8				NR [~ 8900000] (imputed)	N
673	chr16	11633766	11633767	rs35782593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.13	LITAF	rs35782593-G	NR	6E-11		0.0186537	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11633766	11633767	rs35782593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.13	LITAF	rs35782593-G	NR	1E-10		0.0183992	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11633766	11633767	rs35782593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p13.13	LITAF	rs35782593-G	NR	3E-9		0.017486	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
673	chr16	11635315	11635315	rs780432508	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.13		rs780432508-?	NR	6E-21		0.0209872	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
673	chr16	11639483	11639484	rs11641445	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	16p13.13	LITAF	rs11641445-?		4E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [43000000] (imputed)	N
673	chr16	11641179	11641180	rs7203193	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	16p13.13	intergenic	rs7203193-A	0.22	3E-6		0.08	[0.046-0.114] unit increase	Affymetrix [~ 2740000] (imputed)	N
673	chr16	11642241	11642242	rs7102	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.13	LITAF	rs7102-T	0.637041	8E-25		0.0198491	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
673	chr16	11642241	11642242	rs7102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.13		rs7102-?	NR	4E-25				NR [~ 8900000] (imputed)	N
673	chr16	11642241	11642242	rs7102	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16p13.13	NR	rs7102-T	0.646	1E-10		0.0115	[0.008-0.015] unit decrease	NR [~ 27400000] (imputed)	N
673	chr16	11642241	11642242	rs7102	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16p13.13	NR	rs7102-T	0.6465	1E-6		0.0086	[0.0051-0.0121] unit decrease	NR [~ 27400000] (imputed)	N
673	chr16	11642910	11642910	rs71406254	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p13.13		rs71406254-?	NR	5E-25		0.0229306	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
673	chr16	11644841	11644842	rs3784924	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16p13.13	LITAF	rs3784924-A	0.68604	5E-34		0.00679458	[0.0057-0.0079] unit decrease	Affymetrix [13995440] (imputed)	N
673	chr16	11644841	11644842	rs3784924	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16p13.13	NR	rs3784924-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
673	chr16	11645012	11645013	rs11644920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16p13.13		rs11644920-T	NR	2E-34		0.0244	[0.02-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
673	chr16	11645012	11645013	rs11644920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	16p13.13		rs11644920-T	0.480145	1E-10		0.0225246	[0.016-0.029] unit increase	Illumina [13476165] (imputed)	N
673	chr16	11645012	11645013	rs11644920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	16p13.13		rs11644920-T	NR	3E-15		0.0682	[0.051-0.085] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
673	chr16	11645197	11645198	rs57792815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16p13.13	LITAF	rs57792815-C	NR	4E-13		0.0226687	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11645197	11645198	rs57792815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16p13.13	LITAF	rs57792815-C	NR	1E-12		0.0221474	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
673	chr16	11645197	11645198	rs57792815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p13.13	LITAF	rs57792815-C	NR	3E-8		0.0180056	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
674	chr16	11670757	11670758	rs12930096	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.13	LITAF	rs12930096-T	0.142	3E-13		1.22	[0.89-1.55] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
674	chr16	11680859	11680860	rs17523630	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.13	NR	rs17523630-C	0.473753	1E-10		0.0201192	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
674	chr16	11687878	11687879	rs7187498	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	16p13.13		rs7187498-A	0.54	5E-15		0.045	[0.033-0.057] unit increase	Affymetrix [NR]	N
674	chr16	11687878	11687879	rs7187498	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	16p13.13		rs7187498-A	0.54	2E-15		0.047	[0.035-0.059] unit increase	Affymetrix [NR]	N
674	chr16	11688890	11688891	rs7198919	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	16p13.13	NR	rs7198919-?	NR	6E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
674	chr16	11691752	11691753	rs8049607	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	16p13.13		rs8049607-T	0.515	8E-14		0.039	[0.029-0.049] bpm increase	Affymetrix [9800000] (imputed)	N
674	chr16	11691752	11691753	rs8049607	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	16p13.13		rs8049607-T	0.514783	5E-8	(female)	0.0406241	[0.026-0.055] bpm increase	Affymetrix [9800000] (imputed)	N
674	chr16	11691752	11691753	rs8049607	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	16p13.13		rs8049607-T	0.514783	4E-7	(male)	0.0414802	[0.026-0.057] bpm increase	Affymetrix [9800000] (imputed)	N
674	chr16	11691752	11691753	rs8049607	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16p13.13	NR	rs8049607-?	NR	2E-10		1.296901	[0.9-1.7] unit decrease	Illumina [26659972] (imputed)	N
674	chr16	11691752	11691753	rs8049607	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	16p13.13	LITAF	rs8049607-C	0.52	7E-7		1.63	[0.98-2.28] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
674	chr16	11691752	11691753	rs8049607	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	16p13.13	LITAF	rs8049607-T	0.46	6E-15		1.25	[0.81-1.69] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
674	chr16	11691752	11691753	rs8049607	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	16p13.13	LITAF, TNFRSF17, CLEC16A, SNN, ZC3H7A	rs8049607-T	0.49	5E-15		1.23	[0.88-1.57] msec increase	Affymetrix, Illumina [up to 2543686] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	9E-53	(168 ms)	0.0821092	[0.071-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-61	(184 ms)	0.088311	[0.078-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-60	(212 ms)	0.0879265	[0.077-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-56	(222 ms)	0.0853978	[0.074-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-50	(226 ms)	0.0801206	[0.069-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-29	(244 ms)	0.0613501	[0.05-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-18	(110 ms)	0.0465204	[0.036-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	8E-12	(104 ms)	0.0377853	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-9	(78 ms)	0.0327329	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-9	(76 ms)	0.0330046	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-61	(188 ms)	0.0876658	[0.077-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-54	(170 ms)	0.0835821	[0.073-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-26	(246 ms)	0.0577793	[0.047-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	7E-23	(116 ms)	0.0526999	[0.042-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	6E-37	(142 ms)	0.0681701	[0.057-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	6E-12	(102 ms)	0.0384131	[0.028-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-9	(84 ms)	0.0328412	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-63	(202 ms)	0.0898993	[0.079-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-62	(208 ms)	0.0901351	[0.079-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-61	(210 ms)	0.0883298	[0.077-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-60	(186 ms)	0.0870488	[0.076-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-58	(218 ms)	0.0868676	[0.076-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-48	(160 ms)	0.0778229	[0.067-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-24	(122 ms)	0.0547364	[0.044-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	5E-12	(94 ms)	0.0377648	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-64	(206 ms)	0.0907124	[0.08-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-63	(200 ms)	0.0899138	[0.079-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-52	(224 ms)	0.0821391	[0.071-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-39	(144 ms)	0.0703044	[0.06-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-25	(118 ms)	0.0557399	[0.045-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-21	(114 ms)	0.0507822	[0.04-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-15	(98 ms)	0.0432354	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	4E-14	(100 ms)	0.0415078	[0.031-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-8	(82 ms)	0.0318889	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-64	(190 ms)	0.0912995	[0.08-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-60	(182 ms)	0.088413	[0.078-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-59	(214 ms)	0.087666	[0.077-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-48	(228 ms)	0.0790003	[0.068-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-42	(234 ms)	0.0745036	[0.064-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	3E-14	(96 ms)	0.0414115	[0.031-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-9	(70 ms)	0.0335135	[0.023-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-8	(72 ms)	0.0312221	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-65	(194 ms)	0.0914994	[0.081-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-64	(198 ms)	0.0907505	[0.08-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-64	(196 ms)	0.0911556	[0.08-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-47	(166 ms)	0.0786759	[0.068-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-46	(230 ms)	0.077578	[0.067-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-44	(232 ms)	0.0758617	[0.065-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-39	(236 ms)	0.0712661	[0.06-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-38	(146 ms)	0.0695509	[0.059-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-33	(240 ms)	0.0658681	[0.055-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-31	(242 ms)	0.0637346	[0.053-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	2E-22	(248 ms)	0.0535166	[0.043-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-66	(192 ms)	0.09216	[0.081-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-63	(204 ms)	0.0905451	[0.08-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-58	(216 ms)	0.0872145	[0.076-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-57	(220 ms)	0.0865381	[0.076-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-25	(120 ms)	0.0564245	[0.046-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-19	(112 ms)	0.0485741	[0.038-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-15	(108 ms)	0.0437752	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.540548	1E-10	(92 ms)	0.0362772	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	16p13.13	LITAFy	rs2080512-G	0.538	2E-11		0.034	[0.024-0.044] unit decrease	Affymetrix [~ 9000000] (imputed)	N
674	chr16	11692197	11692198	rs2080512	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	16p13.13	LITAF	rs2080512-G	0.538	6E-9	(women)	0.041	[0.027-0.055] unit decrease	Affymetrix [~ 9000000] (imputed)	N
674	chr16	11692657	11692658	rs7191330	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	16p13.13	LITAF	rs7191330-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
674	chr16	11693535	11693536	rs735951	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16p13.13	NR	rs735951-?	NR	4E-13		1.490897	[1.09-1.89] unit decrease	Illumina [26659972] (imputed)	N
674	chr16	11693535	11693536	rs735951	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	16p13.13	LITAF	rs735951-A	0.41	6E-13		1.55	[1.12-1.98] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
674	chr16	11693535	11693536	rs735951	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.13	LITAF	rs735951-A	0.455	2E-28		1.15	[0.95-1.35] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
674	chr16	11694061	11694062	rs11643990	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	16p13.13	LITAF	rs11643990-A	0.333	3E-11		1.355	[0.96-1.75] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
674	chr16	11697889	11697890	rs113344842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.13	LITAF	rs113344842-C	0.214467	1E-11		0.0183115	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr16	11701648	11701649	rs13333308	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	16p13.13	LITAF	rs13333308-?	NR	6E-6	(AA)	32.3	[NR]	Illumina [936149]	N
674	chr16	11703057	11703058	rs8046213	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Walking difficulty in Charcot-Marie-Tooth disease 1A	362 European ancestry severe cases, 62 European ancestry mild cases	NA	16p13.13	NR	rs8046213-?		9E-7				Illumina [600000]	N
674	chr16	11704650	11704651	rs11641184	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p13.13	NR	rs11641184-A	0.4762	4E-10	(EA)	1.0811478	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
674	chr16	11704650	11704651	rs11641184	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p13.13	NR	rs11641184-A	0.4762	1E-14	(EA)	1.0803548	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
674	chr16	11704650	11704651	rs11641184	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p13.13	NR	rs11641184-A	0.4762	3E-10	(EA)	1.0798526	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
674	chr16	11706099	11706100	rs12445804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16p13.13		rs12445804-A	NR	3E-13		0.0208	[0.015-0.026] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
674	chr16	11706099	11706100	rs12445804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16p13.13		rs12445804-A	NR	6E-9		0.0418	[0.028-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
674	chr16	11706099	11706100	rs12445804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	16p13.13		rs12445804-A	NR	9E-14		0.0249	[0.018-0.031] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
674	chr16	11706099	11706100	rs12445804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16p13.13	NR	rs12445804-A	NR	2E-17		0.039	[0.03-0.048] unit increase	Affymetrix [9000000] (imputed)	N
674	chr16	11706099	11706100	rs12445804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16p13.13	NR	rs12445804-A	NR	9E-15		0.0355	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
674	chr16	11706099	11706100	rs12445804	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16p13.13	LITAF, SNN	rs12445804-?		1E-8		0.0291	[0.019-0.039] unit decrease	Illumina [31500000] (imputed)	N
674	chr16	11706099	11706100	rs12445804	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16p13.13	NR	rs12445804-G	0.925127	5E-23		0.0363752	[0.029-0.044] unit decrease	Affymetrix [15000001]	N
674	chr16	11706099	11706100	rs12445804	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16p13.13	LITAF	rs12445804-G	0.925101	8E-9		0.0231166	[0.015-0.031] unit decrease	Affymetrix [NR] (imputed)	N
674	chr16	11706099	11706100	rs12445804	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16p13.13	LITAF	rs12445804-?	NR	7E-14		0.0368	[0.028-0.045] unit increase	Affymetrix [5701386] (imputed)	N
674	chr16	11718432	11718433	rs4781130	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	16p13.13	intergenic	rs4781130-G	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
674	chr16	11720065	11720066	rs12446552	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	16p13.13	LITAF	rs12446552-?	0.277	3E-6	(same direction)	1.0869565	[1.05-1.12]	Illumina [up to 6000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	9E-12	(176 ms)	0.0439334	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	8E-12	(178 ms)	0.043517	[0.031-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	7E-14	(208 ms)	0.0469574	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	7E-14	(188 ms)	0.047324	[0.035-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	6E-9	(144 ms)	0.0360366	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	6E-11	(148 ms)	0.0402479	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	3E-10	(146 ms)	0.0390652	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734316	11734317	rs1344533	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.13	LITAF	rs1344533-T	0.264583	2E-14	(190 ms)	0.0474422	[0.035-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
674	chr16	11734641	11734642	rs12444261	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.13	LITAF	rs12444261-T	0.262	2E-12		0.79	[0.57-1.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
674	chr16	11749773	11749774	rs7195296	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p13.13	intergenic	rs7195296-?	NR	3E-13	(subset analysis)			Illumina [130052]	N
674	chr16	11759893	11759894	rs933571	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	16p13.13	NR	rs933571-A	0.374	2E-6	(Males)	0.26007	[0.15-0.37] unit decrease	Illumina [~ 6600000] (imputed)	N
674	chr16	11774200	11774201	rs3784921	29650764	McDonough CW	2018-04-01	Circ Genom Precis Med	Genetic Variants Influencing Plasma Renin Activity in Hypertensive Patients From the PEAR Study (Pharmacogenomic Evaluation of Antihypertensive Responses).	Plasma renin activity levels	461 European ancestry individuals, 297 African American ancestry individuals	150 European ancestry individuals	16p13.13	TXNDC11, SNN	rs3784921-G	0.93	3E-7	(EA)	0.47	[0.27-0.67] unit increase (discovery)	Illumina [up to 1000000] (imputed)	N
674	chr16	11780773	11780774	rs6498239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.13	TXNDC11	rs6498239-C	0.551691	5E-10		0.013879307	[0.0095-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
674	chr16	11780773	11780774	rs6498239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.13		rs6498239-?	NR	3E-10				NR [~ 8900000] (imputed)	N
674	chr16	11782048	11782049	rs9924009	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.13	NR	rs9924009-?	NR	3E-7	(Latino)	1.0391	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
674	chr16	11782959	11782959	rs34620505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p13.13		rs34620505-CTT	NR	1E-10		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
674	chr16	11792699	11792700	rs933574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p13.13		rs933574-C	NR	5E-17		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
674	chr16	11792699	11792700	rs933574	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16p13.13	SNN	rs933574-A	0.520893	9E-23		0.00217395	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
674	chr16	11792699	11792700	rs933574	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16p13.13	TXNDC11	rs933574-C	0.48	1E-8		5.73	z-score increase	Affymetrix [4311822] (imputed)	N
674	chr16	11792699	11792700	rs933574	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.13	TXNDC11	rs933574-A	0.521101	2E-9		0.012025	[0.0081-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
675	chr16	11799366	11799367	rs55962409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p13.13	NR	rs55962409-C	0.707238	2E-9		0.00725184	[0.0047-0.0098] unit increase	Affymetrix [16582621] (imputed)	N
675	chr16	11799366	11799367	rs55962409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16p13.13	NR	rs55962409-C	0.707238	2E-9		0.00789151	[0.0052-0.0106] unit increase	Affymetrix [16582614] (imputed)	N
675	chr16	11801808	11801809	rs59192189	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.13	TXNDC11	rs59192189-A	0.0018	6E-6		0.8075	[0.46-1.16] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
675	chr16	11817465	11817466	rs78784853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p13.13		rs78784853-?	NR	2E-8				NR [~ 8900000] (imputed)	N
675	chr16	11826840	11826841	rs4439779	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.13	ZC3H7A	rs4439779-?	NR	5E-6	(TAG 54:7)	0.15409413	[0.088-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
675	chr16	11826889	11826890	rs112069438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p13.13		rs112069438-?	NR	6E-8				NR [~ 8900000] (imputed)	N
675	chr16	11833885	11833886	rs7206670	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	16p13.13		rs7206670-T	NR	4E-9		1.07	[1.05-1.1]	NR [13810676] (imputed)	N
675	chr16	11836507	11836508	rs3743588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.13	TXNDC11	rs3743588-A	0.284671	7E-11		0.016284937	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
675	chr16	11836507	11836508	rs3743588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.13	TXNDC11	rs3743588-A	0.284673	5E-10		0.015618016	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
675	chr16	11836507	11836508	rs3743588	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.13	NR	rs3743588-G	0.714871	9E-17		0.00715167	[0.0053-0.009] unit increase	Affymetrix [16582909] (imputed)	N
675	chr16	11836507	11836508	rs3743588	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.13	NR	rs3743588-G	0.714871	5E-18		0.00829262	[0.0062-0.0103] unit increase	Affymetrix [16582965] (imputed)	N
675	chr16	11839325	11839326	rs4780401	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16p13.13	TXNDC11	rs4780401-T	NR	6E-7		0.0679291	[0.037-0.099] unit increase	Illumina [8380626] (imputed)	N
675	chr16	11839325	11839326	rs4780401	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16p13.13	TXNDC11	rs4780401-T	0.59	5E-7	(EA)	0.08346	[0.051-0.116] unit increase	Illumina [8380626] (imputed)	N
675	chr16	11839325	11839326	rs4780401	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16p13.13	TXNDC11	rs4780401-T	0.59	9E-9	(EA)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
675	chr16	11839325	11839326	rs4780401	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16p13.13	TXNDC11	rs4780401-T	0.56	4E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
675	chr16	11863085	11863086	rs2287198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.13	Intergenic	rs2287198-A	0.0881	3E-8	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
675	chr16	11864031	11864032	rs16958642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p13.13	ZC3H7A	rs16958642-A	0.082662	1E-9		0.024468813	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
675	chr16	11864031	11864032	rs16958642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p13.13	ZC3H7A	rs16958642-A	0.082691	6E-11		0.026417531	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
675	chr16	11864031	11864032	rs16958642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p13.13	NR	rs16958642-A	0.082607	3E-10		0.022296	[0.015-0.029] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
675	chr16	11866702	11866703	rs12445820	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16p13.13	NR	rs12445820-G	0.14844900000000005	8E-9		0.0247469	[0.016-0.033] unit increase	Affymetrix [16577313] (imputed)	N
675	chr16	11878032	11878033	rs72782727	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16p13.13	NR	rs72782727-G	0.75372	2E-11		0.00874199	[0.0059-0.0116] unit increase	Affymetrix [16585854] (imputed)	N
675	chr16	11878032	11878033	rs72782727	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16p13.13	NR	rs72782727-G	0.75372	4E-9		0.00928939	[0.0061-0.0125] unit increase	Affymetrix [16585866] (imputed)	N
675	chr16	11887168	11887169	rs6498246	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	16p13.13	ZC3H7A	rs6498246-?	0.156	9E-6		15.23	[8.58-21.88] unit decrease	Illumina [7663546] (imputed)	N
675	chr16	11889058	11889059	rs8053548	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16p13.13		rs8053548-?	NR	3E-8		0.0157646	[0.01-0.021] unit increase	NR [6912294] (imputed)	N
675	chr16	11891360	11891361	rs28495625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	16p13.13	NR	rs28495625-A	0.14871500000000004	1E-12		0.0127398	[0.0092-0.0163] unit increase	Affymetrix [16578495] (imputed)	N
675	chr16	11901960	11901961	rs7194099	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	16p13.13	ZC3H7A	rs7194099-A	0.5561	5E-6	(EA)			Illumina [NR] (imputed)	N
675	chr16	11909551	11909552	rs8063706	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	16p13.13	NR	rs8063706-T	0.272828	4E-9		0.012968	[0.0087-0.0173] unit increase	Affymetrix [16668957] (imputed)	N
675	chr16	11910287	11910288	rs7194344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16p13.13		rs7194344-G	NR	7E-9		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
675	chr16	11919092	11919093	rs7189510	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.13	NR	rs7189510-T	0.597612	4E-11		0.012658	[0.0089-0.0164] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
675	chr16	11919273	11919274	rs62038775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.13		rs62038775-?	NR	3E-17				NR [~ 8900000] (imputed)	N
675	chr16	11920036	11920037	rs4561483	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	16p13.13	BCAR4, CATX-11, RSL1D1	rs4561483-G	0.65	4E-7		1.1627907	[1.10-1.23]	Illumina [9210350] (imputed)	N
675	chr16	11920036	11920037	rs4561483	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	16p13.13	BCAR4, CATX-11, RSL1D1	rs4561483-G	0.35	6E-7		1.13	[1.08-1.18]	Illumina [at least 371504] (imputed)	N
675	chr16	11920036	11920037	rs4561483	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 4,009 cases, 10,082 European ancestry controls, 4,066 controls	16p13.13	BCAR4, RSL1D1, GSPT1, TNFRSF17	rs4561483-A	0.35	2E-8		1.09	[1.02-1.16]	Illumina [307291]	N
675	chr16	11924039	11924040	rs145396067	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p13.13	NR	rs145396067-?	NR	3E-6		0.0721	[0.042-0.102] unit decrease	Illumina [at least 560000] (imputed)	N
676	chr16	11930009	11930010	rs8045421	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.13	RSL1D1	rs8045421-T	0.763108	8E-11		0.0143757	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
676	chr16	11940967	11940968	rs2018199	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.13	NR	rs2018199-?	NR	4E-16				Affymetrix [NR]	N
676	chr16	11957681	11957682	rs139890946	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	16p13.13		rs139890946-A	0.980641	2E-6		0.0489347	[0.029-0.069] unit decrease	Illumina [13900000] (imputed)	N
676	chr16	11970368	11970369	rs149925099	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	16p13.13		rs149925099-C	0.980336	2E-6		0.0482206	[0.028-0.068] unit decrease	Illumina [13900000] (imputed)	N
676	chr16	11987117	11987118	rs1029285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16p13.13		rs1029285-?	NR	1E-29				NR [~ 8900000] (imputed)	N
676	chr16	11989689	11989690	rs33638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.13	GSPT1	rs33638-A	0.365006	2E-9		0.013866883	[0.0093-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
676	chr16	11993423	11993424	rs542201711	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.13	GSPT1	rs542201711-A	0.0036	8E-6		0.8165	[0.46-1.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
676	chr16	12005408	12005411	rs540446851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.13	GSPT1	rs540446851-A	0.604288	2E-11		0.01588111	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr16	12016918	12016919	rs10852344	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	16p13.13	GSPT1, BCAR4	rs10852344-T	0.59	1E-15		0.16	[0.12-0.2] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
676	chr16	12016918	12016919	rs10852344	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	16p13.13	NR	rs10852344-T	0.5835	5E-8		0.158	[0.10-0.21] years increase	NR [NR]	N
676	chr16	12016918	12016919	rs10852344	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	16p13.13	intergenic	rs10852344-C	0.415	1E-11		0.168	[0.12-0.22] years increase	Affymetrix, Illumina [2551160] (imputed)	N
676	chr16	12017620	12017621	rs256400	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p13.13	TNFRSF17	rs256400-G	0.6540625	9E-7	(TNFRSF17, 2665_26_2)	0.12738276	[0.077-0.178] unit increase	Illumina [> 1000000] (imputed)	N
676	chr16	12021485	12021486	rs145980981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.13	RP11-166B2.1	rs145980981-A	0.018205	3E-9		0.05269078	[0.035-0.07] unit increase	Affymetrix [93095623] (imputed)	N
676	chr16	12021485	12021486	rs145980981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16p13.13	RP11-166B2.1	rs145980981-A	0.018208	4E-13		0.06489626	[0.047-0.082] unit increase	Affymetrix [93095623] (imputed)	N
676	chr16	12021485	12021486	rs145980981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.13	RP11-166B2.1	rs145980981-A	0.018201	4E-17		0.07503905	[0.058-0.093] unit increase	Affymetrix [93095623] (imputed)	N
676	chr16	12021485	12021486	rs145980981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.13	RP11-166B2.1	rs145980981-A	0.018204	2E-14		0.06802216	[0.051-0.085] unit increase	Affymetrix [93095623] (imputed)	N
676	chr16	12043511	12043512	rs3850997	32671202	Du M	2020-05-20	Sci Adv	Remote modulation of lncRNA GCLET by risk variant at 16p13 underlying genetic susceptibility to gastric cancer.	Gastric cancer	1,625 Chinese ancestry cases, 2,100 Chinese ancestry controls	5,353 Chinese ancestry cases, 6,685 Chinese ancestry controls, 254 European ancestry cases, 2,835 European ancestry controls	16p13.13	GCLET	rs3850997-?	NR	2E-8	(East Asian)	1.15	[1.09-1.19]	NR [4817140] (imputed)	N
676	chr16	12043511	12043512	rs3850997	32671202	Du M	2020-05-20	Sci Adv	Remote modulation of lncRNA GCLET by risk variant at 16p13 underlying genetic susceptibility to gastric cancer.	Gastric cancer	1,625 Chinese ancestry cases, 2,100 Chinese ancestry controls	5,353 Chinese ancestry cases, 6,685 Chinese ancestry controls, 254 European ancestry cases, 2,835 European ancestry controls	16p13.13	GCLET	rs3850997-?	0.302	2E-9		1.15	[1.10-1.20]	NR [4817140] (imputed)	N
676	chr16	12046185	12046186	rs145593029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p13.13		rs145593029-?	NR	2E-11				NR [~ 8900000] (imputed)	N
677	chr16	12060096	12060097	rs150754620	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	16p13.13		rs150754620-?	NR	3E-12		0.304986	[0.22-0.39] unit decrease	NR [9800000] (imputed)	N
677	chr16	12061581	12061582	rs35682514	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	16p13.13		rs35682514-?	NR	1E-13		0.632616	[0.47-0.8] unit decrease	NR [9800000] (imputed)	N
677	chr16	12061673	12061674	rs2071336	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	16p13.13	TNFRSF17, LOC729978, SNX29	rs2071336-A	0.03253	5E-6		8.82	[5.04-12.59] unit increase	Illumina [up to 4929806] (imputed)	N
677	chr16	12061909	12061910	rs1126889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.13		rs1126889-?	NR	1E-9				NR [~ 8900000] (imputed)	N
677	chr16	12077631	12077632	rs12922317	23358160	Borglum AD	2013-01-29	Mol Psychiatry	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	16p13.13	RUNDC2A	rs12922317-G	0.339	9E-7		1.174		Illumina [541148]	N
677	chr16	12085342	12085343	rs387027	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.13		rs387027-A	0.3609	1E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
677	chr16	12086263	12086267	rs35986807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16p13.13	SNX29	rs35986807-C	0.564167	5E-10		0.014034095	[0.0096-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr16	12102786	12102787	rs11075041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.13		rs11075041-?	NR	2E-8				NR [~ 8900000] (imputed)	N
677	chr16	12136953	12136954	rs1703492	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p13.13	SNX29	rs1703492-A	0.306751	9E-10		0.0124228	[0.0084-0.0164] unit decrease	NR [13737936] (imputed)	N
677	chr16	12158573	12158574	rs190770959	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	16p13.13		rs190770959-C	0.980056	6E-9		0.0564586	[0.037-0.076] unit decrease	Illumina [13900000] (imputed)	N
677	chr16	12180423	12180424	rs72784651	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16p13.13		rs72784651-?	NR	5E-8				NR [7857346] (imputed)	N
677	chr16	12180423	12180424	rs72784651	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.13	NR	rs72784651-T	NR	4E-8		5.471	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
677	chr16	12185128	12185129	rs143708136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16p13.13		rs143708136-T	NR	3E-8		0.2321	[0.15-0.31] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
677	chr16	12185809	12185810	rs8048589	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	16p13.13	SNX29, FLJ32790	rs8048589-C	0.181	4E-6	(Protein (control))			Affymetrix [590000]	N
677	chr16	12185809	12185810	rs8048589	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	16p13.13	SNX29, FLJ32790	rs8048589-C	0.181	4E-6	(Protein (control))			Affymetrix [590000]	N
678	chr16	12197440	12197441	rs2457192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.13	Intergenic	rs2457192-A	0.6925	1E-8	(MTAG)	0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
678	chr16	12197440	12197441	rs2457192	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.13	Intergenic	rs2457192-A	0.689	3E-10	(MTAG)	0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
678	chr16	12197440	12197441	rs2457192	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.13	NR	rs2457192-A	NR	3E-10		6.308	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
678	chr16	12197440	12197441	rs2457192	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.13	SNX29	rs2457192-A	NR	1E-8		5.719	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
678	chr16	12200114	12200115	rs350245	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	16p13.13	NR	rs350245-?	NR	6E-6		0.023651	[0.013-0.034] unit increase	Affymetrix [9658292] (imputed)	N
678	chr16	12202571	12202572	rs350251	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p13.13	SNX29	rs350251-A	NR	2E-8		0.01738843	[0.011-0.023] unit increase	Affymetrix [NR]	N
678	chr16	12215636	12215637	rs168407	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.13	NR	rs168407-A	NR	2E-8		5.574	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
678	chr16	12216126	12216127	rs12599793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.13		rs12599793-?	NR	3E-9				NR [~ 8900000] (imputed)	N
678	chr16	12222296	12222297	rs12598569	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16p13.13	SNX29	rs12598569-?	NR	3E-8		0.4719	[0.12-0.83] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
678	chr16	12231346	12231347	rs34565142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.13	Intergenic	rs34565142-T	0.1583	8E-16	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
678	chr16	12231738	12231739	rs350281	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	16p13.13	NR	rs350281-A		8E-6				Illumina [458525]	N
678	chr16	12231738	12231739	rs350281	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.13		rs350281-T	0.6825	1E-14		0.0117	[0.0088-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
678	chr16	12237811	12237812	rs34098770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.13		rs34098770-A	0.152	3E-16		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
678	chr16	12248856	12248857	rs7501241	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.13	LOC92017	rs7501241-?	NR	5E-6	(PC 34:3)	0.23920786	[0.14-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
678	chr16	12252370	12252371	rs937965	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<lower limit of normal) in never smokers	49 European ancestry cases, 383 European ancestry controls	NA	16p13.13		rs937965-A	NR	6E-6		3.0	[2.53-3.47]	Illumina [242926]	N
678	chr16	12252370	12252371	rs937965	30845926	van der Plaat DA	2019-03-07	BMC Pulm Med	Limited overlap in significant hits between genome-wide association studies on two airflow obstruction definitions in the same population.	Airway obstruction (FEV1/FVC<70%) in never smokers	77 European ancestry cases, 355 European ancestry controls	NA	16p13.13		rs937965-A	NR	9E-7		2.94	[2.51-3.37]	Illumina [242926]	N
679	chr16	12323508	12323509	rs830716	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p13.13	NR	rs830716-C	0.7133	9E-12		1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
679	chr16	12323508	12323509	rs830716	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	16p13.13	NR	rs830716-C	0.7135	5E-7		0.0066	[0.0041-0.0091] unit increase	NR [7666894] (imputed)	N
679	chr16	12350433	12350434	rs2870488	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16p13.13	SNX29	rs2870488-T	0.324321	2E-8		0.0124629	[0.0081-0.0168] unit decrease	NR [16516521] (imputed)	N
679	chr16	12351253	12351254	rs9936260	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p13.13	NA	rs9936260-A	0.7192	4E-9	(Male)	1.066	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
679	chr16	12358066	12358067	rs58049731	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p13.13	NR	rs58049731-T	0.01394	2E-8	(CTSD)	2.196	NR unit increase	Illumina [1671387] (imputed)	N
679	chr16	12404015	12404016	rs1960156	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.13	NR	rs1960156-T	0.2408	5E-6		0.0157973	[0.009-0.0226] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
680	chr16	12468090	12468091	rs2278057	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	16p13.13		rs2278057-T	0.070145	2E-6		0.0175533	[0.01-0.025] unit increase	Illumina [13900000] (imputed)	N
680	chr16	12472649	12472650	rs7191671	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	16p13.13	NR	rs7191671-?		9E-6		11.7671	[6.63-16.91] unit decrease	NR [NR] (imputed)	N
680	chr16	12472649	12472650	rs7191671	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	16p13.13	NR	rs7191671-?		4E-6		4.9988	[4.31-5.69]	NR [NR] (imputed)	N
680	chr16	12483045	12483046	rs67119854	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.13	NR	rs67119854-G	0.462	3E-8		0.0061109	[0.004-0.0083] unit decrease	NR [9732723] (imputed)	N
680	chr16	12508577	12508577	rs60894539	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	16p13.13		rs60894539-G	NR	1E-6		0.73	[0.64-0.83]	Illumina [7105229] (imputed)	N
680	chr16	12508978	12508979	rs12926226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.13	Intergenic	rs12926226-C	0.5337	2E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
680	chr16	12531364	12531365	rs1035578	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	16p13.13		rs1035578-A	0.569	4E-7		35.57484	z score increase	NR [6814003]	N
680	chr16	12531364	12531365	rs1035578	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p13.13	SNX29	rs1035578-?	NR	3E-9		0.011777017	[0.0079-0.0157] unit decrease	NR [7306098]	N
680	chr16	12531364	12531365	rs1035578	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.13		rs1035578-A	0.5272	3E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
680	chr16	12564906	12564907	rs7198595	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	16p13.13	SNX29	rs7198595-A	0.07	5E-11	(polyunsaturated FA-6/polyunsaturated FA-3)	4.6	[3.25-5.95] unit decrease	Illumina [~ 932000] (imputed)	N
680	chr16	12564906	12564907	rs7198595	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	16p13.13	SNX29	rs7198595-A	0.07	5E-6	(polyunsaturated FA-6/polyunsaturated FA-3)			Illumina [~ 932000]	N
680	chr16	12569787	12569788	rs150380018	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Motor fluctuations in levodopa treated Parkinson's disease	219 Korean ancestry cases, 522 Korean ancestry controls	NA	16p13.13	SNX29	rs150380018-G	0.01	8E-6		6.53	[2.54-16.79]	Affymetrix [583535] (imputed)	N
680	chr16	12580270	12580271	rs11863513	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.13	NR	rs11863513-?	NR	3E-6		4.684	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
681	chr16	12594358	12594359	rs9935286	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	16p13.12	SNX29	rs9935286-?	NR	8E-6		5.97	[3.38-8.56] unit increase	Illumina [285340]	N
681	chr16	12594774	12594775	rs3902080	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.12	NR	rs3902080-?	NR	2E-8				Affymetrix [NR]	N
681	chr16	12596934	12596935	rs117147010	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	16p13.12	NR	rs117147010-T	0.029	1E-6		0.358	[0.21-0.5] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
681	chr16	12596934	12596935	rs117147010	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	16p13.12	NR	rs117147010-T	0.029	3E-6		0.346	[0.2-0.49] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
681	chr16	12613038	12613039	rs1641831	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.12	FLJ11151	rs1641831-?	NR	9E-6	(TAG 48:0)	0.3694555	[0.21-0.53] unit decrease	Affymetrix [at least 2500000] (imputed)	N
681	chr16	12630186	12630187	rs7189979	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Response to SSRI in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	16p13.12	SNX29	rs7189979-C	NR	2E-7				NR [NR] (imputed)	N
681	chr16	12630186	12630187	rs7189979	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or openness	865 individuals with SSRI response data, 260,861 individuals with personality trait data	NA	16p13.12	SNX29	rs7189979-C	NR	3E-7				NR [NR] (imputed)	N
681	chr16	12641114	12641115	rs1641895	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16p13.12	LOC92017	rs1641895-T	0.02	5E-7	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
681	chr16	12661177	12661178	rs117016930	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SNX29	rs117016930-?	NR	9E-9	(male)	4.99585	[NR] unit decrease	Affymetrix [NR] (imputed)	N
681	chr16	12661177	12661178	rs117016930	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SNX29	rs117016930-?	NR	2E-8		2.16883	[NR] unit decrease	Affymetrix [NR] (imputed)	N
681	chr16	12686135	12686136	rs6498326	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	16p13.12	CTD-3037G24.3	rs6498326-G	0.37335	9E-7		1.085673	[1.05-1.12]	NR [NR] (imputed)	N
681	chr16	12703394	12703395	rs8063103	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	16p13.12	SNX29	rs8063103-C	0.85	8E-9		0.051	[0.033-0.069] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
681	chr16	12708207	12708208	rs1560104	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.12	SNX29	rs1560104-G	0.47	4E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
681	chr16	12709842	12709843	rs28731373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16p13.12		rs28731373-T	0.82706	2E-8		0.0277675	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
681	chr16	12709842	12709843	rs28731373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16p13.12		rs28731373-T	0.82706	1E-8		0.0278696	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
681	chr16	12709842	12709843	rs28731373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16p13.12		rs28731373-T	0.82706	2E-8		0.0266716	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
681	chr16	12709842	12709843	rs28731373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16p13.12		rs28731373-T	0.82706	2E-8		0.0273891	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
681	chr16	12709842	12709843	rs28731373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16p13.12		rs28731373-T	0.82706	3E-8		0.0274127	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
682	chr16	12718852	12718853	rs189178161	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	16p13.12	CPPED1, SNX29	rs189178161-?	NR	8E-6		0.64	[0.37-0.91] unit increase	Illumina [1075436] (imputed)	N
682	chr16	12723810	12723811	rs11075138	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	16p13.12	intergenic	rs11075138-G	0.9067	8E-6		0.5115	[0.29-0.74] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
682	chr16	12759508	12759509	rs58144239	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.12	NR	rs58144239-?	NR	1E-9	(Latino)	1.2211	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
682	chr16	12776010	12776011	rs139157630	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	16p13.12		rs139157630-T	NR	2E-6		17.07644		Affymetrix, Illumina [62056310] (imputed)	N
682	chr16	12833536	12833537	rs76359385	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	16p13.12		rs76359385-?	NR	5E-6		0.32	[0.18-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
683	chr16	12903963	12903964	rs34583040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p13.12		rs34583040-A	0.103208	4E-9		0.0197215	[0.013-0.026] unit decrease	Illumina [13479295] (imputed)	N
683	chr16	12903963	12903964	rs34583040	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.12	CPPED1, SHISA9	rs34583040-?	NR	7E-10		0.029212154	[0.02-0.038] unit decrease	Illumina [27896057] (imputed)	N
683	chr16	12906450	12906451	rs35020541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.12		rs35020541-?	NR	1E-9				NR [~ 8900000] (imputed)	N
683	chr16	12906970	12906971	rs8060012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.12		rs8060012-T	NR	2E-11		0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
683	chr16	12907060	12907061	rs8045779	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	16p13.12	NR	rs8045779-T	0.836014	1E-11		0.0256174	[0.018-0.033] unit increase	Affymetrix [16580851] (imputed)	N
683	chr16	12965181	12965182	rs372304623	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p13.12	RP11-14K2.1	rs372304623-A	0.0019	6E-6		1.3302	[0.75-1.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
684	chr16	12977061	12977062	rs11864332	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p13.12	NR	rs11864332-?	NR	3E-9	(Latino)	1.1289	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
684	chr16	12984135	12984136	rs12930743	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16p13.12	NR	rs12930743-C	0.551490545526545	6E-10		0.007523549	[0.0051-0.0099] unit increase	NR [NR]	N
684	chr16	12984135	12984136	rs12930743	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16p13.12	NR	rs12930743-C	0.551490545526545	6E-9		0.007895977	[0.0052-0.0106] unit increase	NR [NR]	N
684	chr16	12986741	12986742	rs4781348	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	16p13.12	NR	rs4781348-A	NR	2E-6		1.2067	[NR]	Illumina [4867007] (imputed)	N
684	chr16	12987248	12987249	rs4781349	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.12	NR	rs4781349-C	0.545389904967276	4E-11		0.009777655	[0.0069-0.0127] unit increase	NR [NR]	N
684	chr16	12987248	12987249	rs4781349	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.12	NR	rs4781349-C	0.545389904967276	5E-11		0.006227237	[0.0044-0.0081] unit increase	NR [NR]	N
684	chr16	12994096	12994097	rs11644362	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.12	NR	rs11644362-C	0.545013302309807	9E-12		0.0062853037	[0.0045-0.0081] unit increase	NR [NR]	N
684	chr16	12994096	12994097	rs11644362	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	16p13.12	SHISA9	rs11644362-?	NR	4E-8				NR [2100000]	N
684	chr16	12994096	12994097	rs11644362	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.12	NR	rs11644362-T	NR	3E-8		5.518	z score decrease	Affymetrix [10847151] (imputed)	N
684	chr16	12994096	12994097	rs11644362	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.12	NR	rs11644362-T	0.449	7E-6		0.0119	[0.0067-0.0171] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
684	chr16	12994096	12994097	rs11644362	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16p13.12	NR	rs11644362-T	0.4467	7E-6		0.0156	[0.0088-0.0224] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
684	chr16	13002358	13002359	rs9938751	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	16p13.12	SHISA9	rs9938751-?		1E-6		1.6949153	[1.37-2.08]	Illumina [1444884]	N
684	chr16	13015114	13015115	rs555785137	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	16p13.12	SHISA9	rs555785137-?	NR	5E-8		0.45	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
684	chr16	13026940	13026941	rs62029752	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.12	NR	rs62029752-A	NR	5E-10		6.23	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
684	chr16	13031194	13031195	rs275401	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.12	NR	rs275401-A	NR	2E-8		5.644	z score increase	Affymetrix [10847151] (imputed)	N
684	chr16	13038722	13038723	rs12935276	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	16p13.12	NR	rs12935276-G	NR	5E-10		1.0309278		NR [NR] (imputed)	N
684	chr16	13061610	13061611	rs7192086	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	3,493 Han Chinese ancestry cases, 4,709 Han Chinese ancestry controls	NA	16p13.12		rs7192086-T	NR	5E-8		1.22		Illumina [3937527] (imputed)	N
684	chr16	13061610	13061611	rs7192086	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16p13.12		rs7192086-T	NR	1E-5		1.05		Illumina [NR] (imputed)	N
684	chr16	13061610	13061611	rs7192086	18677311	O'Donovan MC	2008-07-30	Nat Genet	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 cases, 1,517 controls	16p13.12	intergenic	rs7192086-T	0.24	6E-6		1.12	[NR]	Affymetrix [362532]	N
684	chr16	13066832	13066833	rs7200826	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	16p13.12		rs7200826-?	NR	9E-15		0.0238	unit increase	NR [NR]	N
684	chr16	13066832	13066833	rs7200826	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16p13.12	SHISA9	rs7200826-?		1E-8				NR [6786993] (imputed)	N
684	chr16	13066832	13066833	rs7200826	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	16p13.12	NR	rs7200826-T	0.2551	3E-28		1.027	[1.022-1.032]	NR [8098588] (imputed)	N
684	chr16	13066832	13066833	rs7200826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.12	NR	rs7200826-T	0.26416639225002	3E-9		0.0061763306	[0.0041-0.0082] unit increase	NR [NR]	N
684	chr16	13066832	13066833	rs7200826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.12	NR	rs7200826-T	0.26416639225002	4E-9		0.010001818	[0.0067-0.0133] unit increase	NR [NR]	N
684	chr16	13066832	13066833	rs7200826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.12	NR	rs7200826-T	0.26416639225002	4E-9		0.0063789506	[0.0043-0.0085] unit increase	NR [NR]	N
684	chr16	13066832	13066833	rs7200826	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	16p13.12	SHISA9, CPPED1	rs7200826-T	0.25	2E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
684	chr16	13097205	13097206	rs12926477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16p13.12		rs12926477-?	NR	7E-8				NR [~ 8900000] (imputed)	N
684	chr16	13097205	13097206	rs12926477	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p13.12	NR	rs12926477-C	NR	5E-9		5.845	z score decrease	Affymetrix [10847151] (imputed)	N
685	chr16	13111994	13111995	rs77221366	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.12	NR	rs77221366-C	NR	8E-7		1.1627907	[NR]	Illumina [7158791] (imputed)	N
685	chr16	13126765	13126766	rs1392953	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.12	Intergenic	rs1392953-A	0.3086	3E-8	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
685	chr16	13154877	13154878	rs4465599	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		16p13.12	FLJ1111	rs4465599-A	NR	4E-7		0.0276	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
685	chr16	13156648	13156649	rs276626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16p13.12	Intergenic	rs276626-A	0.8294	5E-8		0.0208	[0.013-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
685	chr16	13156648	13156649	rs276626	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.12	NR	rs276626-A	NR	5E-8		5.457	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
685	chr16	13217904	13217905	rs4781415	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p13.12	NR	rs4781415-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
686	chr16	13238896	13238897	rs150063	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1/FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	16p13.12	NR	rs150063-?		9E-6	(AA)			Illumina [up to 524000]	N
686	chr16	13253955	13253956	rs153091	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	16p13.12	LOC729993	rs153091-?	0.227	2E-6	(perphenazine-triglycerides)			Affymetrix [492900]	N
686	chr16	13355068	13355069	rs142469774	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		16p13.12	SKOR2	rs142469774-G	0.01	8E-6		2.021	[1.15-2.9] unit increase	Illumina [640625] (imputed)	N
686	chr16	13361410	13361411	rs11649112	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	16p13.12	NR	rs11649112-A	NR	1E-6	(phenotype 1)	2.49	[NR]	Illumina [> 8000000] (imputed)	N
686	chr16	13361410	13361411	rs11649112	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	16p13.12	NR	rs11649112-A	NR	1E-6	(phenotype 3)	2.49	[NR]	Illumina [> 8000000] (imputed)	N
687	chr16	13388777	13388778	rs729876	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	16p13.12	LOC107984137	rs729876-T	0.8	1E-8		1.23	[1.15-1.32]	Affymetrix, Illumina [1722107] (imputed)	N
688	chr16	13514837	13514838	rs7191159	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16p13.12	U91319.1	rs7191159-T	0.2746	3E-6		0.048	[0.028-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
688	chr16	13586716	13586717	rs13338621	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p13.12	NR	rs13338621-T	0.347	8E-9		0.00668231	[0.0044-0.009] unit decrease	NR [9732723] (imputed)	N
688	chr16	13587081	13587082	rs115690621	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.12		rs115690621-G	0.675	2E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
688	chr16	13597625	13597626	rs13330029	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16p13.12	NR	rs13330029-C	0.653939	6E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
688	chr16	13601212	13601213	rs9930242	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.12	Intergenic	rs9930242-T	0.8231	8E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
688	chr16	13616483	13616484	rs9924758	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p13.12	NR	rs9924758-C	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
688	chr16	13630943	13630944	rs4781499	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16p13.12		rs4781499-?	NR	1E-8				NR [7857346] (imputed)	N
688	chr16	13630943	13630944	rs4781499	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.12	NR	rs4781499-A	NR	2E-9		6.0	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
688	chr16	13630943	13630944	rs4781499	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.12	ENSG00000262801	rs4781499-A	NR	7E-9		5.782	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
689	chr16	13641263	13641264	rs72773563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.12	Intergenic	rs72773563-A	0.1619	4E-8	(MTAG)	0.0171	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
689	chr16	13650147	13650148	rs2226992	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	16p13.12	SHISA9, ERCC4	rs2226992-T	0.28	1E-6		0.241	[0.14-0.34] unit decrease	Illumina [6379332] (imputed)	N
689	chr16	13656884	13656885	rs2903308	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	16p13.12	intergenic	rs2903308-A	0.461	2E-6	(EA + AA - Overall tolerability)			Affymetrix [421789]	N
689	chr16	13747589	13747590	rs17199331	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16p13.12	ERCC4	rs17199331-T	0.097	1E-12		0.030997418	[0.022-0.04] unit increase	Affymetrix [~ 11515000] (imputed)	N
689	chr16	13747802	13747803	rs1076884	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p13.12	ENSG00000262267	rs1076884-?	NR	7E-11		0.015163777	[0.011-0.02] unit decrease	NR [7306098]	N
689	chr16	13747802	13747803	rs1076884	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	16p13.12	ERCC4	rs1076884-C	0.2252	2E-8		0.014976	[0.0097-0.0202] unit increase	Affymetrix [11514936] (imputed)	N
689	chr16	13748915	13748916	rs7499362	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16p13.12	NR	rs7499362-?	NR	1E-10		1.0769131	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
689	chr16	13749264	13749265	rs7499750	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	16p13.12	NR	rs7499750-A	0.2604	5E-11		0.08351792	[0.059-0.108] unit increase	NR [NR]	N
689	chr16	13749264	13749265	rs7499750	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	16p13.12	NR	rs7499750-A	0.2604	4E-8		0.06897875	[0.044-0.094] unit increase	NR [NR]	N
689	chr16	13749264	13749265	rs7499750	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	16p13.12	ERCC4	rs7499750-?	NR	4E-10		1.073	[1.05-1.1]	Illumina [8000000] (imputed)	N
689	chr16	13749858	13749859	rs7405404	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7405404-?	NR	5E-10				NR [2625067]	N
689	chr16	13749858	13749859	rs7405404	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		Intergenic	rs7405404-?		1E-12				NR [6786993] (imputed)	N
689	chr16	13749858	13749859	rs7405404	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs7405404-?	NR	5E-10				Illumina [up to 5582932] (imputed)	N
689	chr16	13749858	13749859	rs7405404	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and schizophrenia (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 34,129 schizophrenia cases, 45,512 controls	NA			rs7405404-T	0.215	1E-6		0.054	unit increase	Illumina [NR] (imputed)	N
689	chr16	13749858	13749859	rs7405404	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		ERCC4	rs7405404-T	NR	7E-9		1.07	[1.05-1.09]	Illumina [6627481] (imputed)	N
689	chr16	13749858	13749859	rs7405404	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (categorical) or schizophrenia	704 European and East Asian ancestry lithium responder bipolar disorder cases, 1,662 European and East Asian ancestry lithium non-responder bipolar disorder controls, 36,989 schizophrenia cases, controls (see Ripke 2014 PMID:25056061).	NA		ERCC4	rs7405404-T		5E-11				NR [NR] (imputed)	N
689	chr16	13749858	13749859	rs7405404	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		ERCC4	rs7405404-T	NR	8E-10		1.073	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
689	chr16	13749858	13749859	rs7405404	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs7405404-T	NR	1E-10		1.08	[NR]	Illumina [7158791] (imputed)	N
689	chr16	13749858	13749859	rs7405404	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		ERCC4	rs7405404-T	0.223	1E-9		1.077	[1.052-1.103]	Affymetrix, Illumina [9005918] (imputed)	N
689	chr16	13750218	13750219	rs7403809	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	16p13.12	NR	rs7403809-T	0.2604	6E-9		0.08302893	[0.055-0.111] unit increase	NR [NR]	N
689	chr16	13750256	13750257	rs7403810	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	16p13.12	NR	rs7403810-T	NR	8E-11		1.03	[1.02-1.04]	NR [NR] (imputed)	N
689	chr16	13750693	13750694	rs7185124	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	16p13.12	NR	rs7185124-?		3E-10				NR [8377093]	N
689	chr16	13751824	13751825	rs11864886	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16p13.12	ERCC4	rs11864886-G	0.2267	5E-6		0.0055	[0.0031-0.0079] unit increase	Affymetrix [~ 7740000] (imputed)	N
689	chr16	13752355	13752356	rs12925872	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	16p13.12	NR	rs12925872-T	NR	3E-9		5.925	NR z score increase	NR [NR]	N
689	chr16	13752355	13752356	rs12925872	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	16p13.12	intergenic	rs12925872-T		2E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [NR]	N
689	chr16	13753383	13753384	rs8055219	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	16p13.12	NR	rs8055219-?		5E-11				NR [8377093]	N
689	chr16	13753383	13753384	rs8055219	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p13.12	ERCC4	rs8055219-A	NR	1E-9	(EA)	1.0799136	[1.06-1.1]	Illumina [6627481] (imputed)	N
689	chr16	13755407	13755408	rs56225373	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p13.12		rs56225373-T	0.839	2E-10		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
689	chr16	13755529	13755530	rs56887639	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	16p13.12	NR	rs56887639-G	0.2736	6E-13		1.017294	[1.01-1.02]	NR [8098588] (imputed)	N
689	chr16	13755529	13755530	rs56887639	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	16p13.12	NR	rs56887639-G	0.2796	5E-8		0.013	[0.0083-0.0177] unit increase	Illumina [NR] (imputed)	N
689	chr16	13755529	13755530	rs56887639	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	16p13.12	NR	rs56887639-G	0.2796	4E-9		0.0156	[0.011-0.021] unit increase	Illumina [NR] (imputed)	N
689	chr16	13757930	13757931	rs12928897	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16p13.12	ERCC4	rs12928897-A	0.134	6E-9		0.020164728	[0.013-0.027] unit increase	Affymetrix [11515109] (imputed)	N
689	chr16	13760151	13760152	rs2866724	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16p13.12	ERCC4	rs2866724-A	0.7316	3E-9		0.013502994	[0.0091-0.0179] unit decrease	Affymetrix [11514654] (imputed)	N
690	chr16	13764811	13764812	rs2105841	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16p13.12	NR	rs2105841-C	0.381334118303076	8E-13		0.006768394	[0.0049-0.0086] unit increase	NR [NR]	N
690	chr16	13765382	13765383	rs12933611	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	16p13.12	NR	rs12933611-T	0.373652	5E-8		5.46	z score decrease	NR [10847151] (imputed)	N
690	chr16	13780934	13780935	rs2097289	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	16p13.12	NR	rs2097289-A	0.6231	8E-10		0.025986817	[0.018-0.034] unit decrease	NR [NR]	N
690	chr16	13786756	13786757	rs34020413	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16p13.12	NR	rs34020413-G	0.382645898358016	2E-10		0.0077026007	[0.0053-0.0101] unit increase	NR [NR]	N
690	chr16	13786756	13786757	rs34020413	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16p13.12	NR	rs34020413-G	0.382645898358016	2E-10		0.009991819	[0.0069-0.0131] unit increase	NR [NR]	N
690	chr16	13786756	13786757	rs34020413	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16p13.12	NR	rs34020413-G	0.382645898358016	4E-10		0.008203329	[0.0056-0.0108] unit increase	NR [NR]	N
690	chr16	13786756	13786757	rs34020413	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16p13.12	NR	rs34020413-G	0.382645898358016	2E-10		0.0065060747	[0.0045-0.0085] unit increase	NR [NR]	N
690	chr16	13790355	13790356	rs12932870	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	16p13.12	NR	rs12932870-T	0.1868	7E-8		0.0082	[0.0053-0.0111] unit increase	NR [7666894] (imputed)	N
690	chr16	13795866	13795867	rs4238620	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.12	NR	rs4238620-?	NR	4E-10				Affymetrix [NR]	N
690	chr16	13804228	13804229	rs28523422	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs28523422-?	NR	3E-6		17.866	NR unit increase	Affymetrix [at least 600000] (imputed)	N
690	chr16	13805593	13805594	rs4781534	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	16p13.12	NR	rs4781534-C	0.343647	3E-8		5.53	z score increase	NR [~ 10847151] (imputed)	N
690	chr16	13814472	13814473	rs179604	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	16p13.12	SHISA9, ERCC4	rs179604-T	0.4922666666666667	9E-6		5.8902	[3.28-8.5] unit decrease	Affymetrix [NR] (imputed)	N
690	chr16	13825769	13825770	rs79266273	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16p13.12	NR	rs79266273-?	NR	1E-8				Illumina [7760689] (imputed)	N
690	chr16	13845718	13845719	rs12934187	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16p13.12	U95743.1, ERCC4, RPS26P52	rs12934187-T	NR	6E-6	(sleep latency, weekdays)	0.6452	[0.37-0.92] unit increase	Affymetrix [7141204] (imputed)	N
690	chr16	13853671	13853672	rs72779414	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		U95743.1	rs72779414-?	NR	2E-10		1.37168	[NR] unit decrease	Affymetrix [NR] (imputed)	N
690	chr16	13859190	13859191	rs186108482	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p13.12	Intergenic	rs186108482-G	1.0	6E-8	(AA)	0.811	unit increase	Illumina [NR] (imputed)	N
690	chr16	13863331	13863332	rs74321030	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16p13.12	U95743.1, ERCC4, RPS26P52	rs74321030-C	NR	8E-6	(sleep efficiency, weekdays)	5.002	[2.8-7.2] unit decrease	Affymetrix [7141204] (imputed)	N
690	chr16	13865226	13865227	rs191732819	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p13.12	Intergenic	rs191732819-A	1.0	6E-8	(AA)	1.028	unit increase	Illumina [NR] (imputed)	N
691	chr16	13907159	13907160	rs116201499	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	16p13.12	ERCC4	rs116201499-?	NR	5E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
691	chr16	13907159	13907160	rs116201499	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	16p13.12	ERCC4	rs116201499-?		1E-6	(AA)	0.61	[0.52-0.7] unit increase	Affymetrix, Illumina [NR] (imputed)	N
691	chr16	13910683	13910684	rs963536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p13.12	Intergenic	rs963536-T	0.8206	1E-9	(MTAG)	0.0183	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr16	13912679	13912680	rs8045713	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p13.12	NR	rs8045713-?	NR	3E-7		5.102	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
691	chr16	13914783	13914784	rs9788857	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	16p13.12		rs9788857-?	NR	3E-8				NR [7857346] (imputed)	N
691	chr16	13914783	13914784	rs9788857	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p13.12	NR	rs9788857-A	NR	7E-9		5.79	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
691	chr16	13915806	13915807	rs9934011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p13.12	Intergenic	rs9934011-T	0.8141	6E-12	(MTAG)	0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr16	13915806	13915807	rs9934011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p13.12	Intergenic	rs9934011-T	0.8141	2E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr16	13915806	13915807	rs9934011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.12	Intergenic	rs9934011-T	0.814	9E-12	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr16	13915806	13915807	rs9934011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.12	Intergenic	rs9934011-T	0.8196	3E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr16	13968028	13968029	rs16963063	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.12	MKL2	rs16963063-?	NR	5E-6	(uridine)	0.36692873	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
691	chr16	13976355	13976356	rs2113334	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16p13.12	ERCC4	rs2113334-?	0.41	3E-6	(WHR)			Illumina [308011]	N
691	chr16	13983494	13983495	rs13338660	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs13338660-?	NR	7E-6		2.562	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13984993	13984994	rs10163219	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs10163219-?	NR	9E-6		2.537	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13986054	13986055	rs9927170	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs9927170-?	NR	9E-6		2.525	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13986726	13986727	rs1364363	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs1364363-?	NR	9E-6		2.542	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13987718	13987719	rs6498482	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs6498482-?	NR	2E-6		2.717	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13987718	13987719	rs6498482	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Egg allergy	217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	16p13.12	LOC729993, ERCC4	rs6498482-?	NR	5E-6				Illumina [6459842] (imputed)	N
691	chr16	13988638	13988639	rs7184192	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs7184192-?	NR	8E-6		2.536	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
691	chr16	13988721	13988722	rs9924452	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs9924452-?	NR	8E-6		2.508	NR unit increase	Affymetrix [at least 600000] (imputed)	N
691	chr16	13989120	13989121	rs7188980	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p13.12	NR	rs7188980-?	NR	4E-6		2.583	NR unit increase	Affymetrix [at least 600000] (imputed)	N
692	chr16	14028080	14028081	rs1799802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16p13.12		rs1799802-?	NR	7E-42				NR [~ 8900000] (imputed)	N
692	chr16	14038173	14038174	rs3136202	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	16p13.12	ERCC4	rs3136202-A	0.429	6E-6		0.07	[NR] unit decrease	Illumina [948658]	N
692	chr16	14045398	14045399	rs4781563	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	16p13.12	ERCC4	rs4781563-A	0.156	2E-6		0.163	[0.097-0.229] unit decrease	Affymetrix [808465]	N
692	chr16	14060470	14060471	rs534822839	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	16p13.12	NR	rs534822839-?	NR	9E-6		0.623892	[0.35-0.9] unit decrease	NR [13958389] (imputed)	N
692	chr16	14075968	14075969	rs13334552	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	16p13.12		rs13334552-A	0.26	7E-10		1.18		NR [NR] (imputed)	N
692	chr16	14086444	14086445	rs9933712	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	16p13.12	ERCC4	rs9933712-A	NR	4E-7	(Perc15, All)	5.2	[1.67-8.73] unit increase	Illumina [7600000] (imputed)	N
693	chr16	14235755	14235756	rs112645476	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	16p13.12	MKL2	rs112645476-T	0.815	5E-6		0.7621	[0.44-1.09] unit decrease	Illumina [9520174] (imputed)	N
694	chr16	14287834	14287835	rs72785421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.12	MKL2, CTA-276F8.2	rs72785421-C	NR	5E-9		0.0247589	[0.016-0.033] unit increase	Affymetrix [323123] (imputed)	N
694	chr16	14338232	14338233	rs77977727	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	16p13.12	MKL2	rs77977727-G	0.804	2E-6		0.7661	[0.45-1.08] unit decrease	Illumina [9520174] (imputed)	N
694	chr16	14380767	14380768	rs246177	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.12	intergenic	rs246177-T	0.3681	2E-27		0.0214	[0.017-0.025] unit increase	Affymetrix [18391927] (imputed)	N
694	chr16	14381174	14381175	rs246179	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16p13.12	NR	rs246179-G	0.616282	8E-9		0.011403	[0.0075-0.0153] unit increase	Affymetrix [15000001]	N
694	chr16	14388304	14388305	rs1659127	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	16p13.12		rs1659127-A	NR	9E-10		0.00519651	[0.0035-0.0068] years increase	NR [7400000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	16p13.12		rs1659127-A	NR	2E-21		0.0109462	[0.0086-0.0133] years increase	NR [7400000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	16p13.12		rs1659127-A	NR	4E-11		0.0048747	[0.0034-0.0063] years decrease	NR [7400000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	16p13.12		rs1659127-A	NR	5E-24		0.00963115	[0.0078-0.0115] years decrease	NR [7400000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	16p13.12		rs1659127-A	NR	4E-47		0.04969837	[0.043-0.056] years increase	NR [7400000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	16p13.12	MKL2, PARN	rs1659127-A	0.48	5E-10		0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
694	chr16	14388304	14388305	rs1659127	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	16p13.12	MKL2	rs1659127-A	0.34	4E-9		2.4	[1.62-3.18] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
694	chr16	14388304	14388305	rs1659127	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16p13.12	MKL2	rs1659127-A	0.34	1E-11		0.027	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
694	chr16	14388625	14388626	rs1704529	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	16p13.12	intergenic	rs1704529-C	NR	1E-9		0.0903341	[0.061-0.12] unit decrease	Affymetrix [27512692] (imputed)	N
694	chr16	14388749	14388750	rs1704528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p13.12		rs1704528-?	NR	5E-33				NR [~ 8900000] (imputed)	N
694	chr16	14388749	14388750	rs1704528	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p13.12	NR	rs1704528-C	0.332174	2E-57		0.0525138	[0.046-0.059] unit decrease	NR [19129689] (imputed)	N
694	chr16	14388749	14388750	rs1704528	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	16p13.12	MKL2, PARN	rs1704528-?	NR	6E-12		0.033	[0.042-0.024] unit decrease	Illumina [12039492]	N
694	chr16	14391922	14391923	rs246180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16p13.12		rs246180-?	NR	2E-31				NR [~ 8900000] (imputed)	N
694	chr16	14391922	14391923	rs246180	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		16p13.12	NR	rs246180-A	NR	6E-13		0.0475407	NR unit decrease	NR [NR] (imputed)	N
694	chr16	14391922	14391923	rs246180	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	16p13.12	MKL2, PARN	rs246180-?	NR	8E-9		1.152	[1.098-1.209]	Illumina [13436641] (imputed)	N
694	chr16	14394843	14394844	rs193536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.12		rs193536-T	NR	5E-39		0.0175	[0.015-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
694	chr16	14394843	14394844	rs193536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p13.12		rs193536-T	0.500905	1E-18		0.0178949	[0.014-0.022] unit increase	Illumina [13479295] (imputed)	N
694	chr16	14395431	14395432	rs246185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16p13.12	RP11-65J21.3	rs246185-C	NR	2E-9		0.0199127	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
694	chr16	14395431	14395432	rs246185	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	16p13.12	MIR193B	rs246185-?	NR	2E-6				Affymetrix, Illumina [22000000] (imputed)	N
694	chr16	14395431	14395432	rs246185	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.12	MKL2, MIR193B	rs246185-?	NR	6E-20		0.02613886	[0.021-0.032] unit increase	Illumina [27896057] (imputed)	N
694	chr16	14395431	14395432	rs246185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.12		rs246185-?	NR	4E-50				NR [~ 8900000] (imputed)	N
694	chr16	14395431	14395432	rs246185	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	16p13.12		rs246185-T	0.33	3E-10		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
694	chr16	14395431	14395432	rs246185	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	16p13.12	PARN, MKL2	rs246185-?	NR	7E-14		0.044	[-0.056-0.032] unit decrease	Illumina [12039491]	N
694	chr16	14395431	14395432	rs246185	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16p13.12	MKL2	rs246185-C	0.33	7E-16		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
694	chr16	14395431	14395432	rs246185	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16p13.12	MKL2	rs246185-C	0.335	3E-13		0.72	[0.52-0.92] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
694	chr16	14395431	14395432	rs246185	24770850	Cousminer DL	2014-04-25	Hum Mol Genet	Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty.	Puberty onset (genital enlargement)	3,769 European ancestry boys	208 European ancestry individuals	16p13.12	MKL2	rs246185-T	0.68	9E-9		0.141	[0.092-0.190] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
694	chr16	14400308	14400309	rs30233	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	16p13.12	MIR193BHG	rs30233-A	0.556632080724637	3E-8		0.0256	[0.016-0.035] SD decrease	Illumina [22400000] (imputed)	N
694	chr16	14402264	14402265	rs30231	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16p13.12		rs30231-C	NR	2E-11		0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
694	chr16	14405427	14405428	rs30227	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	16p13.12	MIR365A	rs30227-T	0.61	2E-17		0.046	[0.036-0.056] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	9E-9	(292 ms)	0.0318332	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	8E-11	(306 ms)	0.0360427	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	8E-10	(318 ms)	0.0335428	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	7E-9	(294 ms)	0.0320807	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	6E-9	(298 ms)	0.032198	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	6E-10	(312 ms)	0.0343403	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	5E-10	(320 ms)	0.0343613	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	5E-10	(302 ms)	0.0343826	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	4E-8	(290 ms)	0.0303862	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	4E-10	(310 ms)	0.0347352	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	3E-9	(330 ms)	0.0329116	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	3E-10	(304 ms)	0.0349178	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	2E-9	(328 ms)	0.0331568	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	2E-9	(300 ms)	0.0332815	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-9	(322 ms)	0.0340351	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-8	(326 ms)	0.0317451	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-8	(324 ms)	0.0320773	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-8	(296 ms)	0.0315959	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-10	(316 ms)	0.0358814	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-10	(314 ms)	0.0360333	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14405891	14405892	rs30226	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.12	MKL2	rs30226-G	0.549572	1E-10	(308 ms)	0.0357356	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
694	chr16	14406118	14406119	rs30224	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	16p13.12		rs30224-C	0.65	2E-8		0.034	[0.022-0.046] unit decrease	Affymetrix [NR]	N
695	chr16	14425408	14425409	rs72785461	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.12	NR	rs72785461-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
695	chr16	14463358	14463359	rs11646803	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	16p13.12	LINC02130	rs11646803-C	0.52	5E-10		2.2222223	[1.72-2.86]	Affymetrix [508192]	N
695	chr16	14464153	14464154	rs11647829	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	16p13.12	NR	rs11647829-?	NR	2E-14		0.21	[0.15-0.27] unit decrease	Illumina [at least 830937] (imputed)	N
695	chr16	14487035	14487036	rs57327054	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	16p13.12	RP11-65J21.4	rs57327054-C	0.6919	8E-10		0.1173	[0.08-0.155] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
695	chr16	14500409	14500409	rs769100706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16p13.12		rs769100706-A	0.803669	2E-9		0.0308996	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
696	chr16	14652219	14652220	rs182059586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.12		rs182059586-?	NR	4E-8				NR [~ 8900000] (imputed)	N
696	chr16	14674203	14674204	rs112210983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p13.12	Intergenic	rs112210983-A	0.2362	7E-12	(MTAG)	0.0133	[0.0096-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
696	chr16	14674203	14674204	rs112210983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.12		rs112210983-A	0.2308	3E-10		0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
696	chr16	14674203	14674204	rs112210983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.12	Intergenic	rs112210983-A	0.2308	1E-12	(MTAG)	0.0111	[0.008-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
697	chr16	14705000	14705001	rs12928399	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.12		rs12928399-C	NR	3E-11		0.102837	[0.072-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
697	chr16	14705000	14705001	rs12928399	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.12		rs12928399-C	NR	1E-13		0.0758372	[0.056-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
697	chr16	14740291	14740292	rs184539640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p13.12		rs184539640-A	NR	5E-9		0.0527	[0.035-0.07] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
697	chr16	14753258	14753259	rs34936342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p13.12		rs34936342-?	NR	3E-8				NR [~ 8900000] (imputed)	N
697	chr16	14760733	14760734	rs16963833	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p13.12	NR	rs16963833-?	NR	6E-40				Affymetrix [NR]	N
699	chr16	14975291	14975292	rs4780563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p13.11		rs4780563-?	NR	8E-9				NR [~ 8900000] (imputed)	N
699	chr16	14975291	14975292	rs4780563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p13.11	Intergenic	rs4780563-A	0.1724	1E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
699	chr16	15054020	15054021	rs11648086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	16p13.11		rs11648086-G	0.66176	2E-10		0.0306103	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054020	15054021	rs11648086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	16p13.11		rs11648086-G	0.66176	2E-9		0.0288554	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054020	15054021	rs11648086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	16p13.11		rs11648086-G	0.66176	7E-10		0.029461	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054533	15054534	rs56015824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	16p13.11		rs56015824-T	0.345634	2E-9		0.0288044	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054533	15054534	rs56015824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16p13.11		rs56015824-T	0.345634	3E-10		0.0300888	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054533	15054534	rs56015824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	16p13.11		rs56015824-T	0.345634	8E-10		0.0294849	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054533	15054534	rs56015824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs56015824-T	0.345634	3E-11		0.0318913	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
699	chr16	15054533	15054534	rs56015824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs56015824-T	0.345634	3E-10		0.0303986	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
699	chr16	15055041	15055042	rs117304899	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	16p13.11	NR	rs117304899-G	0.02	2E-9		0.92	[0.63-1.21] unit increase	Affymetrix [9231066] (imputed)	N
699	chr16	15055041	15055042	rs117304899	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	16p13.11	NR	rs117304899-G	0.02	2E-9		0.92	[0.63-1.21] unit increase	Affymetrix [9231066] (imputed)	N
700	chr16	15082864	15082865	rs4985167	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.11	NPIP	rs4985167-?	NR	3E-8	(CE 20:3)	0.24670078	[0.16-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
700	chr16	15082864	15082865	rs4985167	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	16p13.11	PDXDC1	rs4985167-T	NR	3E-7		0.01	[NR] % increase	Affymetrix, Illumina [NR]	N
700	chr16	15104806	15104807	rs11645958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11645958-C	0.723928	2E-14		0.0392403	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
700	chr16	15104806	15104807	rs11645958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16p13.11		rs11645958-C	0.723928	4E-11		0.034167	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	5E-9		0.0252086	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	5E-9		0.0252086	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	3E-10		0.0269472	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	3E-10		0.0269472	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-8		0.0245167	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-8		0.0245167	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-12		0.0297523	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-12		0.0297523	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-9		0.0258563	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
700	chr16	15106127	15106127	rs756441495	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs756441495-G,rs756441495-G	0.630136	2E-9		0.0258563	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
700	chr16	15108286	15108287	rs11648118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16p13.11		rs11648118-A	0.374061	3E-8		0.0266319	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
700	chr16	15116155	15116156	rs4985127	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16p13.11	PDXDC1	rs4985127-T	0.383756	3E-8		0.0125724	[0.0081-0.017] unit decrease	NR [16516521] (imputed)	N
700	chr16	15118253	15118254	rs4985126	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16p13.11		rs4985126-T	0.437151	1E-8		0.024628	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15119606	15119607	rs8059755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16p13.11		rs8059755-T	0.44119	7E-9		0.0279595	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15119606	15119607	rs8059755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs8059755-T	0.44136	6E-10		0.0293735	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
700	chr16	15119606	15119607	rs8059755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16p13.11		rs8059755-T	0.44136	5E-15		0.0369483	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
700	chr16	15119606	15119607	rs8059755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16p13.11		rs8059755-T	0.44136	1E-9		0.0295067	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
700	chr16	15119606	15119607	rs8059755	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs8059755-T	0.44136	3E-8		0.0258359	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-A	NR	4E-10		0.0638	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-A	NR	4E-10		0.0641	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-T	NR	4E-10		0.0962	[0.066-0.126] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-C	NR	4E-10		0.0492	[0.034-0.065] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-G	NR	4E-10		0.0478	[0.033-0.063] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15124326	15124327	rs77927814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs77927814-G	NR	4E-10		0.0431	[0.03-0.057] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-T	NR	3E-11		0.04	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	1E-40		0.218965	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	6E-50		0.244152	[0.21-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	6E-18		0.0812807	[0.063-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	4E-13		0.0936854	[0.068-0.119] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	3E-15		0.096811	[0.073-0.121] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-T	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-C	NR	3E-11		0.0571	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-T	NR	3E-11		0.0627	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-G	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	7E-15		0.0640725	[0.048-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4985124-G	NR	9E-54		0.168253	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15125440	15125441	rs4985124	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985124-C	NR	3E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15127533	15127534	rs72789541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs72789541-T	0.704027	5E-96		0.0906088	[0.082-0.099] unit decrease	NR [11722792] (imputed)	N
700	chr16	15127533	15127534	rs72789541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs72789541-T	0.704027	3E-115		0.0992036	[0.091-0.108] unit increase	NR [11722792] (imputed)	N
700	chr16	15127533	15127534	rs72789541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	16p13.11		rs72789541-T	0.704027	6E-74		0.0796479	[0.071-0.088] unit increase	NR [11722792] (imputed)	N
700	chr16	15127533	15127534	rs72789541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	16p13.11		rs72789541-T	0.704027	3E-82		0.0834033	[0.075-0.092] unit increase	NR [11722792] (imputed)	N
700	chr16	15127533	15127534	rs72789541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	16p13.11		rs72789541-T	0.704027	4E-77		0.07999	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
700	chr16	15127533	15127534	rs72789541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.11	NR	rs72789541-A	0.296544	1E-10		0.013055	[0.0091-0.017] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
700	chr16	15127533	15127534	rs72789541	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, RRN3	rs72789541-?	NR	2E-8		0.0149524	[0.0097-0.0202] unit increase	Affymetrix [25921788] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	2E-27		0.187432	[0.15-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	3E-34		0.211344	[0.18-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	2E-13		0.0726206	[0.053-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	2E-12		0.0950423	[0.069-0.122] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	6E-14		0.0966438	[0.071-0.122] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	8E-12		0.058849	[0.042-0.076] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15128415	15128416	rs35811052	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs35811052-G	NR	2E-39		0.149957	[0.13-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129458	15129459	rs4985155	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	16p13.11	PDXDC1	rs4985155-A	0.665	1E-12				Affymetrix, Illumina [2331072] (imputed)	N
700	chr16	15129458	15129459	rs4985155	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p13.11	NA	rs4985155-A	0.6689	3E-9		0.0102	[0.0069-0.0135] unit increase	NR [~ 27400000] (imputed)	N
700	chr16	15129458	15129459	rs4985155	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p13.11	NA	rs4985155-A	0.6689	3E-9		0.0102	[0.0069-0.0135] unit increase	NR [~ 27400000] (imputed)	N
700	chr16	15129458	15129459	rs4985155	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.11	PDXDC1	rs4985155-A	0.665	6E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
700	chr16	15129458	15129459	rs4985155	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.11	PDXDC1	rs4985155-A	0.664	5E-6	(EA)	0.015	[0.0084-0.0214] kg/m2 increase	Affymetrix, Illumina [2550021]	N
700	chr16	15129458	15129459	rs4985155	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p13.11	PDXDC1	rs4985155-A	0.662	2E-6		0.015	[0.0089-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
700	chr16	15129458	15129459	rs4985155	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.11	PDXDC1	rs4985155-A	0.66	5E-7		0.018	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
700	chr16	15129458	15129459	rs4985155	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p13.11	PDXDC1	rs4985155-A	0.66	1E-8	(men)	0.029	unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
700	chr16	15129458	15129459	rs4985155	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, C16orf45, KIAA0430, MYH11, NDEI, RRN3, PARN	rs4985155-A	0.647	2E-12		0.01	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15129458	15129459	rs4985155	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, C16orf45, KIAA0430, MYH11, NDEI, RRN3, PARN	rs4985155-A	0.648	2E-67		0.22	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15129458	15129459	rs4985155	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16p13.11	NTAN1	rs4985155-A	0.67	2E-10		0.03	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15129939	15129940	rs3198697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	16p13.11		rs3198697-C	0.593299	1E-10		0.0266243	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
700	chr16	15129939	15129940	rs3198697	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.11		rs3198697-C	0.593273	6E-9		0.0242292	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	2E-11		0.0514904	[0.037-0.066] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	4E-33		0.181042	[0.15-0.21] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	5E-42		0.205576	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	5E-14		0.0656644	[0.049-0.083] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3198697-T	NR	2E-12		0.0399	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3198697-A	NR	2E-12		0.056	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	3E-13		0.0556237	[0.041-0.071] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3198697-T	NR	4E-43		0.139107	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129939	15129940	rs3198697	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3198697-C	NR	2E-12		0.0713	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15129939	15129940	rs3198697	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs3198697-C	NR	2E-11		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15129939	15129940	rs3198697	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs3198697-C	0.585	8E-11	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15129939	15129940	rs3198697	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs3198697-C	NR	2E-6		0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15129939	15129940	rs3198697	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs3198697-C	0.585	4E-6	(EA)	0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15129939	15129940	rs3198697	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16p13.11	PDXDC1	rs3198697-T	0.43	2E-8		0.02	[NR] mg/dL decrease	NR [NR] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16p13.11		rs7200543-G	NR	2E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-C	NR	2E-10		0.0569	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	3E-40		0.217604	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	1E-49		0.24336	[0.21-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	1E-17		0.0805403	[0.062-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	2E-12		0.0910345	[0.066-0.116] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	5E-15		0.0962291	[0.072-0.12] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-T	NR	2E-10		0.0734	[0.051-0.096] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-C	NR	2E-10		0.0589	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-G	NR	2E-10		0.029	[0.02-0.038] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-A	NR	2E-10		0.0626	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	3E-15		0.0648283	[0.049-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs7200543-G	NR	3E-54		0.16903	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15129969	15129970	rs7200543	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs7200543-A	NR	2E-10		0.09	[0.062-0.118] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15129969	15129970	rs7200543	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p13.11	NR	rs7200543-A	NR	8E-7		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
700	chr16	15129969	15129970	rs7200543	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p13.11	PDXDC1, NTAN1	rs7200543-A	0.7011	2E-9		0.0117	[0.008-0.0154] unit increase	Illumina [246328]	N
700	chr16	15129969	15129970	rs7200543	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p13.11	PDXDC1	rs7200543-G	0.32	1E-9		0.015	[0.011-0.019] unit decrease	Illumina [6108953] (imputed)	N
700	chr16	15129969	15129970	rs7200543	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	16p13.11	PDXDC1	rs7200543-A	0.681	6E-9	(Trans-ethnic initial)	0.021	[0.014-0.028] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
700	chr16	15129969	15129970	rs7200543	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	16p13.11	NTAN1, PDXDC1, PLA2G10	rs7200543-A	0.6987	3E-17	(Phosphatidylcholine diacyl C38:3)	0.0413	[0.032-0.051] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
700	chr16	15129969	15129970	rs7200543	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	16p13.11	PDXDC1	rs7200543-G	0.304	5E-16	(SM-15 + 12 other traits)	0.073	[NR] unit decrease	Affymetrix, Illumina [534665]	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	6E-22		0.1004	[0.08-0.121] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	5E-22		0.0551	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	5E-22		0.1109	[0.088-0.133] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	5E-22		0.1149	[0.092-0.138] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	5E-22		0.0683	[0.054-0.082] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1741-G	NR	5E-22		0.051	[0.041-0.061] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130350	15130351	rs1741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.11		rs1741-?	NR	6E-22				NR [~ 8900000] (imputed)	N
700	chr16	15130350	15130351	rs1741	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1	rs1741-C	0.308	2E-10		0.2	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	3E-15		0.0317858	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	4E-14		0.0297339	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697933	1E-12		0.0293808	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697933	1E-10		0.0280919	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	2E-15		0.0319296	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	3E-14		0.0299562	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697933	2E-12		0.0279695	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	1E-15		0.0313282	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	2E-13		0.0298068	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	9E-14		0.0292368	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	7E-14		0.0295019	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16p13.11		rs6498540-A	0.697936	2E-14		0.0303298	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-T	NR	1E-10		0.0877	[0.061-0.114] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-C	NR	1E-10		0.0472	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-A	NR	1E-10		0.0797	[0.055-0.104] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-A	NR	1E-10		0.0709	[0.049-0.092] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-G	NR	1E-10		0.0813	[0.057-0.106] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498540-C	NR	1E-10		0.0487	[0.034-0.064] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15130593	15130594	rs6498540	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	16p13.11	PDXDC1, PLA2G10	rs6498540-G	0.3488	2E-6	(CE(20:3;0))	0.1605	[0.094-0.227] unit decrease	Illumina [~ 9300000] (imputed)	N
700	chr16	15130593	15130594	rs6498540	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	16p13.11	PDXDC1	rs6498540-A	0.71	5E-8	(D6D)			Illumina [at least 738879] (imputed)	N
700	chr16	15130593	15130594	rs6498540	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	16p13.11	NTAN1, PDXDC1, PLA2G10	rs6498540-A	0.6989	1E-21	(lysoPhosphatidylcholine acyl C20:3)	0.0556	[0.044-0.067] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
700	chr16	15130593	15130594	rs6498540	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p13.11	PDXDC1	rs6498540-A	0.7	3E-11	(dihomo-linolenate (20:3n3 or n6))	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
700	chr16	15131075	15131076	rs1121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1121-G	NR	2E-30		0.1062	[0.088-0.124] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131075	15131076	rs1121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1121-A	NR	2E-30		0.096	[0.08-0.112] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131075	15131076	rs1121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1121-A	NR	2E-30		0.1383	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131075	15131076	rs1121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1121-G	NR	2E-30		0.0819	[0.068-0.096] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131075	15131076	rs1121	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1121-C	NR	2E-30		0.0813	[0.067-0.095] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131641	15131642	rs4985154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985154-C	NR	3E-11		0.0353	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131641	15131642	rs4985154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985154-T	NR	3E-11		0.0398	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131641	15131642	rs4985154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985154-C	NR	3E-11		0.0915	[0.065-0.118] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131641	15131642	rs4985154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985154-A	NR	3E-11		0.0577	[0.041-0.075] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131641	15131642	rs4985154	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985154-C	NR	3E-11		0.0718	[0.051-0.093] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131654	15131654	rs11376559	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p13.11	PDXDC1	rs11376559-C	0.5532	4E-11	(dihomo-linolenate (20:3n3 or n6))	0.159	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
700	chr16	15131654	15131654	rs11376559	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p13.11	PDXDC1	rs11376559-CA	0.2889	1E-6		0.0367	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
700	chr16	15131654	15131654	rs11376559	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p13.11	PDXDC1	rs11376559-CA	0.2889	1E-6		0.0367	[0.022-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-C	NR	6E-30		0.0801	[0.066-0.094] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-T	NR	6E-30		0.1494	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-C	NR	6E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-C	NR	6E-30		0.1349	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-C	NR	6E-30		0.1494	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1135999-C	NR	6E-30		0.1494	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131961	15131962	rs1135999	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	16p13.11	ACKR3	rs1135999-?		7E-9				NR [7428630] (imputed)	N
700	chr16	15131961	15131962	rs1135999	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16p13.11	DPYSL3	rs1135999-?		2E-9				NR [7428630] (imputed)	N
700	chr16	15131961	15131962	rs1135999	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16p13.11	NR	rs1135999-?		2E-8				NR [7428630] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-G	NR	6E-30		0.1348	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	6E-40		0.217579	[0.19-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	5E-49		0.242348	[0.21-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	3E-17		0.0798319	[0.061-0.098] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	3E-12		0.0904959	[0.065-0.116] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	5E-15		0.096226	[0.072-0.12] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-T	NR	6E-30		0.1699	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-G	NR	6E-30		0.1254	[0.1-0.15] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-G	NR	6E-30		0.1493	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-G	NR	6E-30		0.1098	[0.091-0.129] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	4E-15		0.0646661	[0.049-0.081] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1136001-T	NR	2E-54		0.169924	[0.15-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15131973	15131974	rs1136001	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs1136001-T	NR	6E-30		0.1048	[0.087-0.123] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15131973	15131974	rs1136001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p13.11	NTAN1	rs1136001-T	0.2965	3E-16		0.0169	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
700	chr16	15131973	15131974	rs1136001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	16p13.11	NTAN1	rs1136001-T	0.297	8E-9		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
700	chr16	15131973	15131974	rs1136001	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	16p13.11	NTAN1	rs1136001-T	0.297	9E-10		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
700	chr16	15131973	15131974	rs1136001	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, C16orf45, KIAA0430, MYH11, NDEI, RRN3, PARN	rs1136001-T	0.309	1E-15		0.35	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15131973	15131974	rs1136001	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	16p13.11	PDXDC1, NTAN1	rs1136001-T	0.44	7E-6		0.05	[0.03-0.07] cm decrease	Illumina [420885]	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-A	NR	1E-12		0.0822	[0.06-0.105] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-A	NR	1E-12		0.0608	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-C	NR	1E-12		0.0672	[0.049-0.086] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-G	NR	1E-12		0.1868	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-G	NR	1E-12		0.0239	[0.017-0.031] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs2740-C	NR	1E-12		0.0608	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132107	15132108	rs2740	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	16p13.11	PDXDC1	rs2740-A	0.71	5E-32	(linoleate (18:2n6)/dihomo-linolenate (20:3n3 or n6))	0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-C	NR	2E-12		0.1548	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-C	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-A	NR	2E-12		0.0758	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-T	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-T	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34614532-C	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15132907	15132908	rs34614532	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p13.11	NTAN1, PDXDC1	rs34614532-?	NR	4E-16		0.02336937	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
700	chr16	15133783	15133784	rs776783846	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p13.11	NTAN1, PDXDC1	rs776783846-CT	0.2922	2E-6		0.0335	[0.02-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-T	NR	2E-24		0.099	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-T	NR	2E-24		0.1019	[0.082-0.121] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-C	NR	2E-24		0.0856	[0.069-0.102] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-A	NR	2E-24		0.0819	[0.066-0.098] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-G	NR	2E-24		0.0991	[0.08-0.118] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15133888	15133889	rs14347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs14347-A	NR	2E-24		0.0712	[0.057-0.085] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-T	NR	3E-22		0.1701	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-G	NR	3E-22		0.0819	[0.065-0.099] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-T	NR	3E-22		0.1701	[0.14-0.2] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-G	NR	3E-22		0.1397	[0.11-0.17] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-G	NR	3E-22		0.0513	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135853	15135854	rs16966953	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966953-T	NR	3E-22		0.0775	[0.062-0.093] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-C	NR	3E-22		0.0914	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-T	NR	3E-22		0.065	[0.052-0.078] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-T	NR	3E-22		0.0752	[0.06-0.09] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-G	NR	3E-22		0.0539	[0.043-0.065] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-T	NR	3E-22		0.0513	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15135942	15135943	rs16966952	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966952-G	NR	3E-22		0.0592	[0.047-0.071] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-C	NR	3E-11		0.0398	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-A	NR	3E-11		0.0771	[0.054-0.1] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-A	NR	3E-11		0.05	[0.035-0.065] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-G	NR	3E-11		0.0592	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-T	NR	3E-11		0.0641	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136618	15136619	rs4985152	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985152-A	NR	3E-11		0.0659	[0.046-0.085] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-G	NR	3E-11		0.0866	[0.061-0.112] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-G	NR	3E-11		0.0826	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-G	NR	3E-11		0.0624	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-G	NR	3E-11		0.0483	[0.034-0.063] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-T	NR	3E-11		0.2298	[0.16-0.3] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15136684	15136685	rs4985150	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985150-G	NR	3E-11		0.076	[0.054-0.098] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15137482	15137485	rs79638963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p13.11		rs79638963-C	NR	5E-22		0.0169	[0.014-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-G	NR	5E-12		0.0637	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-C	NR	5E-12		0.0611	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-G	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-G	NR	5E-12		0.0813	[0.058-0.104] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-T	NR	5E-12		0.0637	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803573-C	NR	5E-12		0.0232	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138412	15138413	rs3803573	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.11	NR	rs3803573-?	NR	8E-10		0.14809	[0.1-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
700	chr16	15138412	15138413	rs3803573	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.11	NR	rs3803573-?	NR	6E-6	(male)	0.17267	[0.098-0.247] unit decrease	Affymetrix [7794483] (imputed)	N
700	chr16	15138412	15138413	rs3803573	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p13.11	NR	rs3803573-?	NR	4E-6	(female)	0.12148	[0.07-0.173] unit decrease	Affymetrix [7794483] (imputed)	N
700	chr16	15138412	15138413	rs3803573	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p13.11	NTAN1	rs3803573-?	NR	8E-6	(CE 18:3)	0.17047468	[0.096-0.245] unit decrease	Affymetrix [at least 2500000] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16p13.11		rs3803575-C	0.439538	1E-15		0.0218125	[0.016-0.027] unit decrease	Illumina [13479924] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-C	NR	5E-12		0.0576	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-T	NR	5E-12		0.0603	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-A	NR	5E-12		0.0493	[0.035-0.063] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-G	NR	5E-12		0.0733	[0.053-0.094] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-T	NR	5E-12		0.052	[0.037-0.067] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138446	15138447	rs3803575	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs3803575-T	NR	5E-12		0.1078	[0.077-0.138] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-A	NR	1E-25		0.1323	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-A	NR	1E-25		0.0683	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-T	NR	9E-26		0.0678	[0.055-0.081] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-T	NR	9E-26		0.0691	[0.056-0.082] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-A	NR	1E-25		0.0688	[0.056-0.082] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15138852	15138853	rs12920234	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12920234-T	NR	1E-25		0.0646	[0.052-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-G	NR	1E-25		0.0615	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-T	NR	1E-25		0.0627	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-G	NR	1E-25		0.0883	[0.072-0.105] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-C	NR	1E-25		0.0674	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-G	NR	1E-25		0.078	[0.063-0.093] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139016	15139017	rs12934815	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934815-T	NR	1E-25		0.0832	[0.068-0.099] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-G	NR	1E-25		0.0639	[0.052-0.076] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-T	NR	1E-25		0.1013	[0.082-0.12] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-T	NR	1E-25		0.135	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-A	NR	1E-25		0.06	[0.049-0.071] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-A	NR	1E-25		0.0778	[0.063-0.092] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139050	15139051	rs12934835	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12934835-A	NR	1E-25		0.1812	[0.15-0.22] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	16p13.11		rs34955778-T	0.580038	2E-13		0.0298264	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0416	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0325	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0756	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0416	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs34955778-T	NR	2E-12		0.0416	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15139593	15139594	rs34955778	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16p13.11	PDXDC1	rs34955778-T	0.581303	4E-10		0.0123761	[0.0085-0.0163] unit increase	Affymetrix [NR] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	9E-39		0.211452	[0.18-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	4E-47		0.234466	[0.2-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	2E-18		0.0814502	[0.063-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_35:2_[M+H]1+/Phosphatidylethanolamine_38:2_[M+H]1+/Phosphatidate_40:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	8E-13		0.0916789	[0.067-0.117] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	7E-15		0.094701	[0.071-0.119] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4500751-G	NR	1E-11		0.1485	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4500751-T	NR	1E-11		0.0494	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4500751-A	NR	1E-11		0.0301	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	4E-14		0.0617685	[0.046-0.078] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4500751-T	NR	3E-52		0.164281	[0.14-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15140210	15140211	rs4500751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4500751-T	NR	1E-11		0.0557	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140210	15140211	rs4500751	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	16p13.11	PDXDC1	rs4500751-?	NR	6E-23	(levels)	0.0	[0.80-2.40] % increase	Illumina [NR] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-A	NR	1E-10		0.0851	[0.059-0.111] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-G	NR	1E-10		0.0413	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-C	NR	1E-10		0.0838	[0.058-0.109] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-T	NR	1E-10		0.0832	[0.058-0.108] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-G	NR	1E-10		0.1077	[0.075-0.14] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15140656	15140657	rs6498541	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs6498541-T	NR	1E-10		0.0432	[0.03-0.056] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15141044	15141045	rs16966947	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966947-C	NR	3E-22		0.0514	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15141044	15141045	rs16966947	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966947-G	NR	2E-22		0.0863	[0.069-0.104] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15141044	15141045	rs16966947	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966947-G	NR	2E-22		0.0827	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15141044	15141045	rs16966947	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966947-T	NR	3E-22		0.0894	[0.071-0.107] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15141044	15141045	rs16966947	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs16966947-C	NR	3E-22		0.0514	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15145251	15145252	rs55727637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs55727637-T	NR	3E-11		0.1198	[0.084-0.155] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15145251	15145252	rs55727637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs55727637-C	NR	3E-11		0.0303	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15145251	15145252	rs55727637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs55727637-T	NR	3E-11		0.0642	[0.045-0.083] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15145251	15145252	rs55727637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs55727637-T	NR	3E-11		0.0764	[0.054-0.099] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15145251	15145252	rs55727637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs55727637-A	NR	3E-11		0.0395	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15145555	15145555	rs755903303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs755903303-AT,rs755903303-AT	0.654457	1E-10		0.0283394	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15145555	15145555	rs755903303	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs755903303-AT,rs755903303-AT	0.654457	1E-10		0.0283394	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-G	NR	2E-12		0.0652	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-C	NR	2E-12		0.0416	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-G	NR	2E-12		0.0613	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-A	NR	2E-12		0.0602	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-C	NR	2E-12		0.0773	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs35574015-G	NR	2E-12		0.0649	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15146060	15146061	rs35574015	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	16p13.11	NTAN1	rs35574015-C	NR	3E-13	(Lysophosphatidylcholine with acyl residue C18:1/Lysophosphatidylcholine with acyl residue C20:3)	0.31705	[0.23-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
700	chr16	15147787	15147788	rs4985148	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985148-T	NR	3E-11		0.0553	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147787	15147788	rs4985148	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985148-G	NR	3E-11		0.0759	[0.054-0.098] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15147787	15147788	rs4985148	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985148-C	NR	3E-11		0.0544	[0.038-0.07] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147787	15147788	rs4985148	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985148-C	NR	3E-11		0.0532	[0.038-0.069] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147787	15147788	rs4985148	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4985148-C	NR	3E-11		0.0744	[0.052-0.096] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-G	NR	3E-10		0.0415	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-A	NR	3E-10		0.0861	[0.059-0.113] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-T	NR	3E-10		0.0384	[0.026-0.05] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-T	NR	3E-10		0.0318	[0.022-0.042] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-A	NR	3E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15147953	15147954	rs72774845	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs72774845-G	NR	3E-10		0.0341	[0.024-0.045] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704205	2E-11		0.0284844	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	5E-12		0.0295707	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704233	2E-12		0.0296841	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	4E-11		0.0284862	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	1E-13		0.032074	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	2E-18		0.0368992	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	5E-15		0.033009	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16p13.11		rs11075253-C	0.70438	4E-10		0.027146	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	3E-12		0.0296651	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704217	2E-10		0.0275895	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	7E-16		0.0326971	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	2E-13		0.0292679	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16p13.11		rs11075253-C	0.70438	2E-10		0.0277321	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	8E-13		0.0304949	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	6E-16		0.0330212	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	16p13.11		rs11075253-C	0.704211	2E-13		0.0311241	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16p13.11		rs11075253-A	NR	1E-22		0.0244	[0.02-0.029] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_38:3_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	1E-12		0.0577299	[0.042-0.074] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	2E-38		0.211255	[0.18-0.24] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	3E-45		0.230195	[0.2-0.26] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_37:3_[M+OAc]1-/Phosphatidylserine_41:2_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	1E-14		0.0719375	[0.054-0.09] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_36:3_[M+H]1+/Phosphatidylethanolamine_39:3_[M+H]1+/Phosphatidate_41:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	2E-10		0.0988031	[0.068-0.129] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	2E-10		0.0770999	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11075253-T	NR	1E-31		0.0855	[0.071-0.1] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11075253-C	NR	1E-31		0.1015	[0.084-0.119] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11075253-C	NR	1E-31		0.0858	[0.071-0.1] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Fatty acid(20:3)_[M-H]1- levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	2E-16		0.0669949	[0.051-0.083] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	4E-50		0.160564	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11075253-A	NR	5E-11		0.0727947	[0.051-0.095] unit increase	Affymetrix [87696910] (imputed)	N
700	chr16	15148645	15148646	rs11075253	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11075253-T	NR	1E-31		0.1158	[0.096-0.135] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15148645	15148646	rs11075253	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16p13.11	PDXDC1	rs11075253-A	0.297121	7E-11		0.0468788	[0.033-0.061] unit decrease	Affymetrix [9463307] (imputed)	N
700	chr16	15148645	15148646	rs11075253	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p13.11	NA	rs11075253-C	0.7107	3E-8	(Female)	1.0460252	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
700	chr16	15148645	15148646	rs11075253	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	16p13.11	PDXC1, C20:2, C20:3	rs11075253-?	NR	5E-15	(LA/PUFA)	0.14	[0.1-0.18] unit decrease	Illumina [~ 7700000] (imputed)	N
700	chr16	15150504	15150505	rs12928099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p13.11		rs12928099-A	NR	1E-33		0.0307	[0.026-0.036] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
700	chr16	15150504	15150505	rs12928099	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12928099-C	NR	1E-25		0.0692	[0.056-0.082] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15150504	15150505	rs12928099	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12928099-G	NR	1E-25		0.0883	[0.072-0.105] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15150504	15150505	rs12928099	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12928099-C	NR	1E-25		0.0778	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15150504	15150505	rs12928099	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs12928099-G	NR	1E-25		0.0778	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p13.11	PDXDC1	rs12928099-C	0.703554	1E-37		0.0280607	[0.024-0.032] unit increase	Affymetrix [NR] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16p13.11	PDXDC1	rs12928099-C	0.703876	5E-25		0.0213868	[0.017-0.025] unit decrease	Affymetrix [NR] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.11	NR	rs12928099-A	0.295281	4E-29		0.00985446	[0.008-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p13.11	NR	rs12928099-A	0.294775	7E-13		0.00882643	[0.0063-0.0113] unit increase	Affymetrix [16582621] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.11	NR	rs12928099-A	0.295281	1E-23		0.00987091	[0.0079-0.0119] unit increase	Affymetrix [16582965] (imputed)	N
700	chr16	15150504	15150505	rs12928099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16p13.11	NR	rs12928099-A	0.294775	1E-11		0.00913176	[0.0065-0.0118] unit increase	Affymetrix [16582614] (imputed)	N
700	chr16	15150504	15150505	rs12928099	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16p13.11	intergenic	rs12928099-A	0.2698	5E-15		0.0253	[0.019-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
700	chr16	15150832	15150833	rs2280018	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, C16orf45, KIAA0430, MYH11, NDEI, RRN3, PARN	rs2280018-A	0.38	4E-14	(Conditioned on rs16966952)	0.38	[0.28-0.48] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15150832	15150833	rs2280018	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	16p13.11	PDXDC1, NTAN1, C16orf45, KIAA0430, MYH11, NDEI, RRN3, PARN	rs2280018-A	0.39	5E-25	(Conditioned on rs16966952)	0.16	[0.12-0.20] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
700	chr16	15153716	15153717	rs9927842	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p13.11	NR	rs9927842-C	0.8384	7E-9		0.0375	[0.025-0.05] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
700	chr16	15153716	15153717	rs9927842	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p13.11	NR	rs9927842-C	0.7886	7E-10		0.0307	[0.021-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
700	chr16	15153716	15153717	rs9927842	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p13.11		rs9927842-T	0.149	6E-11		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
700	chr16	15154897	15154898	rs3751877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3751877-C	NR	1E-12		0.174394	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15154897	15154898	rs3751877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3751877-C	NR	5E-14		0.185354	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15154897	15154898	rs3751877	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs3751877-C	NR	3E-10		0.102919	[0.071-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
700	chr16	15155897	15155898	rs2966157	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p13.11	PDXDC1, RRN3	rs2966157-?	NR	6E-11		0.015330326	[0.011-0.02] unit decrease	NR [7306098]	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	6E-15		0.0335118	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-11		0.028802	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	2E-8		0.0241926	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	5E-9		0.0248426	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	5E-11		0.0285625	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	5E-9		0.0252982	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-8		0.024003	[0.015-0.033] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	6E-11		0.0286121	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	2E-11		0.0294895	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703326	6E-12		0.0289063	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703326	1E-33		0.052633	[0.044-0.061] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703326	1E-51		0.0656563	[0.057-0.074] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703326	2E-59		0.0706378	[0.062-0.079] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-12		0.0302143	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	1E-10		0.0282431	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-11		0.0286356	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	7E-19		0.0354986	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	3E-11		0.0286741	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-11		0.0288494	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703326	2E-104		0.093279	[0.085-0.102] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	1E-10		0.0281433	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	4E-15		0.0334711	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	6E-11		0.0286436	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	1E-15		0.0343314	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	1E-8		0.02522	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16p13.11		rs11644601-T	0.703305	2E-11		0.0291999	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
700	chr16	15172117	15172118	rs11644601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11644601-T	NR	9E-29		0.1091	[0.09-0.128] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15172117	15172118	rs11644601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11644601-A	NR	9E-29		0.0869	[0.072-0.102] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15172117	15172118	rs11644601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11644601-C	NR	9E-29		0.1389	[0.11-0.16] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15172117	15172118	rs11644601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11644601-C	NR	9E-29		0.07	[0.058-0.082] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15172117	15172118	rs11644601	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs11644601-T	NR	9E-29		0.0794	[0.065-0.093] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15172117	15172118	rs11644601	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16p13.11	RRN3, PDXDC1	rs11644601-?	NR	1E-20		0.0268	[0.022-0.032] unit decrease	Affymetrix [5701386] (imputed)	N
700	chr16	15172117	15172118	rs11644601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs11644601-T	NR	3E-16		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15172117	15172118	rs11644601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs11644601-T	0.703	8E-16	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15172117	15172118	rs11644601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs11644601-T	NR	7E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15172117	15172118	rs11644601	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16p13.11	NR	rs11644601-T	0.703	1E-8	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
700	chr16	15172117	15172118	rs11644601	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16p13.11	NPIPA5, PDXC1	rs11644601-C	0.28	8E-13	(ratio of bis-allylic bonds to double bonds in lipids)	0.1	[0.08-0.12] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
700	chr16	15174570	15174571	rs4122352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4122352-G	NR	1E-11		0.0664	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15174570	15174571	rs4122352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4122352-C	NR	1E-11		0.0389	[0.028-0.05] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15174570	15174571	rs4122352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4122352-T	NR	1E-11		0.0584	[0.042-0.075] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15174570	15174571	rs4122352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4122352-C	NR	1E-11		0.15	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
700	chr16	15174570	15174571	rs4122352	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester(20:3)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	16p13.11		rs4122352-G	NR	1E-11		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
700	chr16	15174570	15174571	rs4122352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16p13.11	NR	rs4122352-A	0.29554499999999995	2E-16		0.0107544	[0.0081-0.0134] unit increase	Affymetrix [16585854] (imputed)	N
700	chr16	15174570	15174571	rs4122352	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16p13.11	NR	rs4122352-A	0.29554499999999995	1E-13		0.0110328	[0.008-0.0141] unit increase	Affymetrix [16585866] (imputed)	N
700	chr16	15177694	15177695	rs8060236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p13.11		rs8060236-A	NR	3E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
700	chr16	15179787	15179788	rs35429473	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p13.11	PDXDC1, RRN3	rs35429473-G	0.0873857	7E-11	(1-dihomo-linolenylglycerol (20:3))	0.275	[0.19-0.36] unit increase	Illumina [13039987] (imputed)	N
701	chr16	15251605	15251606	rs2175238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.11		rs2175238-?	NR	8E-9				NR [~ 8900000] (imputed)	N
701	chr16	15265655	15265656	rs200674936	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	16p13.11	AC126763.1	rs200674936-?	NR	3E-6		0.122	[0.071-0.173] unit decrease	Illumina [7870334] (imputed)	N
702	chr16	15369018	15369019	rs11861982	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11861982-T	NR	2E-11		0.123097	[0.087-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
702	chr16	15369018	15369019	rs11861982	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11861982-T	NR	2E-16		0.151603	[0.12-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
702	chr16	15369018	15369019	rs11861982	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs11861982-T	NR	9E-24		0.122198	[0.098-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
702	chr16	15378696	15378697	rs1629212	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	16p13.11	MPV17L, PDXDC1, PLA2G10	rs1629212-A	0.5974	2E-12	(lysoPhosphatidylcholine acyl C20:3)	0.0493	[0.036-0.063] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
702	chr16	15379571	15379572	rs56213767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs56213767-A	0.401374	1E-8		0.0273963	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
702	chr16	15379571	15379572	rs56213767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16p13.11		rs56213767-A	0.401374	1E-11		0.0321924	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
702	chr16	15379571	15379572	rs56213767	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	16p13.11	NR	rs56213767-?	NR	3E-6		0.028136	[0.016-0.04] unit increase	Affymetrix [9658292] (imputed)	N
702	chr16	15387150	15387151	rs3933955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p13.11	NR	rs3933955-C	0.754685	1E-9		0.017090818	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
702	chr16	15387150	15387151	rs3933955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p13.11	NR	rs3933955-C	0.754687	7E-10		0.017406939	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
702	chr16	15387150	15387151	rs3933955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p13.11		rs3933955-C	0.754745	8E-10		0.017253535	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
702	chr16	15387150	15387151	rs3933955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p13.11		rs3933955-C	0.754746	8E-10		0.017272074	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
702	chr16	15388637	15388638	rs1700265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1700265-T	NR	2E-11		0.102377	[0.072-0.132] unit increase	Affymetrix [87696910] (imputed)	N
702	chr16	15388637	15388638	rs1700265	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs1700265-T	NR	6E-14		0.0758099	[0.056-0.096] unit increase	Affymetrix [87696910] (imputed)	N
703	chr16	15497974	15497975	rs191573861	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	16p13.11	NR	rs191573861-?	NR	7E-6		0.5549	[0.31-0.8] unit decrease	Illumina [at least 560000] (imputed)	N
703	chr16	15501098	15501099	rs1672811	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	16p13.11	PDXDC1	rs1672811-?	NR	3E-9		0.00904	[0.0048-0.0133] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
703	chr16	15530707	15530708	rs7404843	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	16p13.11	MPV17L	rs7404843-G	0.11	8E-13		1.28	[1.21-1.35]	Illumina [at least 371504] (imputed)	N
703	chr16	15539900	15539901	rs6498552	32949544	Jones E	2020-09-16	Lancet Neurol	Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease (sporadic)	4,110 European ancestry cases, 13,569 European ancestry controls	1,098 European ancestry cases, 498 ,016 European ancestry controls	16p13.11	BMERB1	rs6498552-T	0.102	6E-8		1.11	[0?96-1?29]	Affymetrix, Illumina [6314492] (imputed)	N
703	chr16	15545021	15545022	rs66906963	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs66906963-G	NR	7E-14		0.13283	[0.098-0.168] unit increase	Affymetrix [87696910] (imputed)	N
703	chr16	15548543	15548544	rs559910746	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	16p13.11	Intergenic	rs559910746-?		2E-6		171.6	[100.45-242.75] unit increase	Illumina [~ 10000000] (imputed)	N
703	chr16	15557622	15557623	rs4781668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4781668-G	NR	6E-24		0.157833	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
703	chr16	15557622	15557623	rs4781668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4781668-G	NR	2E-27		0.170444	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
703	chr16	15557622	15557623	rs4781668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs4781668-G	NR	2E-21		0.0982858	[0.078-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
703	chr16	15587496	15587497	rs34792	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	8,631 European ancestry individuals	NA	16p13.11	C16orf45	rs34792-C	0.38	3E-6		0.21	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
704	chr16	15626959	15626960	rs12919246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:3_[M+H]1+/Phosphatidylethanolamine_41:3_[M+H]1+/Phosphatidate_43:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs12919246-G	NR	6E-12		0.119152	[0.085-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
704	chr16	15626959	15626960	rs12919246	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_38:2_[M+H]1+/Phosphatidylethanolamine_41:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16p13.11		rs12919246-G	NR	1E-12		0.123632	[0.09-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
704	chr16	15690119	15690120	rs116132984	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	16p13.11		rs116132984-T	0.93023	4E-7		0.0257464	[0.016-0.036] unit decrease	Illumina [13900000] (imputed)	N
704	chr16	15728273	15728274	rs9940874	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	16p13.11	KIAA0430	rs9940874-?	NR	1E-6				Illumina [659211]	N
705	chr16	15816145	15816146	rs2384933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p13.11	NDE1	rs2384933-C	0.645655	2E-9		0.014121493	[0.0095-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
705	chr16	15818309	15818310	rs11130	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p13.11	NDE1	rs11130-?	NR	4E-8		0.010989607	[0.0071-0.0149] unit increase	NR [7306098]	N
705	chr16	15821113	15821114	rs138053699	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	16p13.11	NDE1, MYH11	rs138053699-A	0.019	1E-8	(YKL-40)	46.309	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
705	chr16	15834728	15834729	rs72772025	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16p13.11	MYH11	rs72772025-T	0.2739	4E-8		0.4135	[0.27-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
706	chr16	15869465	15869466	rs12922040	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	16p13.11	MYH11, NDE1	rs12922040-?		5E-6	(EA)	0.2415	[0.14-0.34] unit increase	Affymetrix [NR] (imputed)	N
706	chr16	15879372	15879373	rs6498573	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	16p13.11	MYH11	rs6498573-?	0.1365	5E-12		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
706	chr16	15881966	15881967	rs17213965	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	16p13.11	MYH11	rs17213965-T	0.14	9E-7	(BMI_men)	0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
706	chr16	15883489	15883490	rs17214007	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	16p13.11	MYH11	rs17214007-?	NR	4E-6		0.0356	[0.021-0.051] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
706	chr16	15902589	15902590	rs9972711	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16p13.11	MYH11	rs9972711-A	0.7085	9E-7		0.0351	[0.021-0.049] unit increase	NR [8041861] (imputed)	N
706	chr16	15906129	15906130	rs8044595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16p13.11		rs8044595-G	NR	5E-8		0.0301	[0.019-0.041] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
706	chr16	15906129	15906130	rs8044595	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p13.11	MYH11	rs8044595-G	0.63	4E-8		0.1446	[0.093-0.196] mmHg increase	Affymetrix [NR] (imputed)	N
706	chr16	15910742	15910743	rs3915499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p13.11		rs3915499-?	NR	7E-9				NR [~ 8900000] (imputed)	N
706	chr16	15910742	15910743	rs3915499	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	16p13.11	MYH11	rs3915499-G	0.682326	1E-9		0.418187	[0.28-0.55] unit decrease	Affymetrix [~ 7800000] (imputed)	N
706	chr16	15910742	15910743	rs3915499	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p13.11	MYH11	rs3915499-G		2E-8		0.152	unit increase	Affymetrix [at least 2696785] (imputed)	N
706	chr16	15910742	15910743	rs3915499	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	16p13.11	MYH11	rs3915499-A	0.32	1E-17		0.303	[0.23-0.37] unit increase	Affymetrix [19941912] (imputed)	N
706	chr16	15912543	15912544	rs3915425	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.11	MYH11	rs3915425-T	0.670114	5E-8	(328 ms)	0.0344439	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
706	chr16	15912543	15912544	rs3915425	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.11	MYH11	rs3915425-T	0.670114	4E-8	(348 ms)	0.0332685	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
706	chr16	15912543	15912544	rs3915425	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p13.11	MYH11	rs3915425-T	0.670114	3E-8	(336 ms)	0.0349181	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
706	chr16	15915857	15915858	rs7192541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16p13.11		rs7192541-C	NR	3E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
706	chr16	15917837	15917838	rs216158	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16p13.11	MYH11	rs216158-?	NR	4E-8		0.0285939	[0.018-0.039] unit decrease	Illumina [4804024] (imputed)	N
706	chr16	15917837	15917838	rs216158	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16p13.11	MYH11	rs216158-C	0.589	5E-7		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
706	chr16	15927275	15927276	rs76053540	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,084 Han Chinese ancestry women (>50 years old)	964 European ancestry women	16p13.11	MYH11	rs76053540-?	NR	3E-6	(Dominant, nasolabial folds)	0.2	unit decrease	Illumina [6328611] (imputed)	N
706	chr16	15927275	15927276	rs76053540	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,084 Han Chinese ancestry women (>50 years old)	964 European ancestry women	16p13.11	MYH11	rs76053540-?	0.22	5E-9	(Dominant, nasolabial folds, East Asian)	0.27	NR unit decrease	Illumina [6328611] (imputed)	N
706	chr16	15972630	15972631	rs11644635	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	16p13.11	FOPNL	rs11644635-T	0.39	3E-6		0.13	[0.071-0.189] unit decrease	Illumina [14638245] (imputed)	N
706	chr16	15974641	15974642	rs72773978	26198393	Ziv E	2015-07-22	Nat Commun	Genome-wide association study identifies variants at 16p13 associated with survival in multiple myeloma patients.	Multiple myeloma (survival)	469 European ancestry cases, 25 African American cases, 27 Latino cases, 24 cases	1090 European ancestry cases	16p13.11	MYH11, FOPNL, ABCC1, ABCC6	rs72773978-T	0.051	7E-9		1.93	[1.54-2.41]	Affymetrix, Illumina [6026834] (imputed)	N
707	chr16	16011679	16011680	rs7187140	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	16p13.11	FOPNL, ABCC1, MYH11	rs7187140-C	0.09	3E-7	(AA)	5.35	[2.82-10.16]	Affymetrix [at least 730985] (imputed)	N
707	chr16	16047824	16047825	rs2384937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p13.11	NR	rs2384937-C	NR	1E-9		0.0225	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
707	chr16	16048652	16048653	rs71378214	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	16p13.11	ABCC1	rs71378214-C	0.106825	7E-6		1.793	[1.389 - 2.315]	Illumina [5396854] (imputed)	N
707	chr16	16055105	16055106	rs74475935	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (undetermined subtype)	up to 8,062 European ancestry cases, up to 1,086 African ancestry cases, up to 362 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	17 African ancestry cases, 17 East Asian ancestry cases, 3,514 European ancestry cases, 149 Hispanic cases, 239 African ancestry controls, 329 East Asian ancestry controls, 259,291 European ancestry controls, 686 Hispanic controls	16p13.11	ABCC1	rs74475935-G	0.018	5E-11	(African ancestry, CCSc)	4.63	[2.77-7.72]	Illumina [up to 15400000] (imputed)	N
707	chr16	16060941	16060942	rs4781701	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	16p13.11	ABCC1	rs4781701-C	0.13	9E-6		0.015	NR unit increase	Illumina [1231747]	N
707	chr16	16065400	16065401	rs215088	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	16p13.11	ABCC1	rs215088-A	0.478	6E-6		1.446	[1.232-1.697]	Affymetrix, Illumina [14074516] (imputed)	N
707	chr16	16110847	16110848	rs3784861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p13.11	NR	rs3784861-G	0.526367	5E-14		0.014641	[0.011-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
707	chr16	16116555	16116556	rs17264736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p13.11	ABCC1	rs17264736-T	0.574567	3E-11		0.014908265	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
707	chr16	16116555	16116556	rs17264736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p13.11		rs17264736-?	NR	8E-11				NR [~ 8900000] (imputed)	N
708	chr16	16123047	16123048	rs875740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	16p13.11	ABCC1	rs875740-A	0.666041	1E-13		0.017426979	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16123047	16123048	rs875740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16p13.11	ABCC1	rs875740-A	0.666052	1E-15		0.018852342	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16123047	16123048	rs875740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs875740-A	0.617491	8E-15				Affymetrix, Illumina [19905671] (imputed)	N
708	chr16	16123047	16123048	rs875740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16p13.11	NR	rs875740-A	0.665329	2E-16		0.017944	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
708	chr16	16123047	16123048	rs875740	32627186	Man-Choi Ho A	2020-07-05	Clin Pharmacol Ther	Mood Stabilizing Antiepileptic Treatment Response in Bipolar Disorder: A Genome-Wide Association Study.	Response to antiepileptic mood-stabilizing treatment in bipolar disorder	199 European ancestry cases	NA	16p13.11	ABCC1	rs875740-C	0.34	2E-6		1.3	NR unit decrease	Illumina [7368687] (imputed)	N
708	chr16	16123458	16123459	rs924135	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p13.11	ABCC1	rs924135-A	0.458313	6E-15	(succinylcarnitine (C4-DC))	0.171	[0.13-0.21] unit decrease	Illumina [13039987] (imputed)	N
708	chr16	16123458	16123459	rs924135	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p13.11	ABCC1	rs924135-A	0.458313	4E-27	(cys-gly, oxidized)	0.243	[0.2-0.29] unit decrease	Illumina [13039987] (imputed)	N
708	chr16	16123458	16123459	rs924135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	16p13.11	ABCC1	rs924135-T	0.6139	1E-10		0.02315483	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr16	16123458	16123459	rs924135	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p13.11	ABCC1	rs924135-A	0.38	2E-19	(succinylcarnitine)	0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
708	chr16	16124007	16124008	rs11642957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs11642957-C	0.491439	2E-12				Affymetrix, Illumina [22063850] (imputed)	N
708	chr16	16127234	16127235	rs2062541	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	16p13.11	ABCC1	rs2062541-A	0.61	1E-25	(hexanoylcarnitine/octanoylcarnitine)	0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
708	chr16	16127234	16127235	rs2062541	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p13.11	ABCC1	rs2062541-A	0.62	6E-13	(X-13435)	0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
708	chr16	16127915	16127916	rs193538	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16p13.11	ABCC1	rs193538-T	0.6993	4E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
708	chr16	16128741	16128742	rs246234	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p13.11	ABCC1	rs246234-C	0.3	3E-14	(glutaroyl carnitine)	0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
708	chr16	16133993	16133994	rs165975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16p13.11		rs165975-C	NR	1E-10		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
708	chr16	16133993	16133994	rs165975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs165975-C	0.270409	9E-14				Affymetrix, Illumina [21126107] (imputed)	N
708	chr16	16133993	16133994	rs165975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p13.11		rs165975-?	NR	2E-12				NR [~ 8900000] (imputed)	N
708	chr16	16137212	16137213	rs246223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	16p13.11		rs246223-C	0.398982	1E-8		0.0210805	[0.014-0.028] unit decrease	Illumina [13477028] (imputed)	N
708	chr16	16141809	16141810	rs35591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	16p13.11		rs35591-G	NR	6E-16		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
708	chr16	16141822	16141823	rs35592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.11	ABCC1	rs35592-C	0.233731	3E-14		0.02019277	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16142078	16142079	rs60782127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p13.11		rs60782127-T	NR	2E-11		0.0477	[0.034-0.062] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
708	chr16	16142078	16142079	rs60782127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.11	ABCC1	rs60782127-T	0.0135999999999999	6E-11		0.063039616	[0.044-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16142078	16142079	rs60782127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p13.11	ABCC1	rs60782127-T	0.013602	2E-11		0.06471392	[0.046-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16142078	16142079	rs60782127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16p13.11	NR	rs60782127-T	0.013758	8E-12		0.058887	[0.042-0.076] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
708	chr16	16142078	16142079	rs60782127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p13.11	NR	rs60782127-T	0.01347	2E-10		0.052749	[0.036-0.069] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
708	chr16	16142078	16142079	rs60782127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p13.11	NR	rs60782127-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
708	chr16	16142078	16142079	rs60782127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.11		rs60782127-?	NR	5E-17				NR [~ 8900000] (imputed)	N
708	chr16	16149406	16149406	rs35490080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p13.11		rs35490080-CA	NR	4E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
708	chr16	16151052	16151056	rs368280815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p13.11	ABCC1	rs368280815-A	0.167724	3E-13		0.021871705	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16152939	16152940	rs35596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p13.11	ABCC1	rs35596-C	0.225871	3E-9		0.0160445	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr16	16195256	16195257	rs79686715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p13.11	ABCC1	rs79686715-A	NR	7E-9		0.0461289	[0.031-0.062] unit decrease	Affymetrix [321016] (imputed)	N
708	chr16	16199254	16199255	rs16967755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p13.11	ABCC1	rs16967755-G	0.233494	8E-10		0.016007673	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
708	chr16	16204821	16204822	rs9931487	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale)	4,057 Finnish ancestry individuals	NA	16p13.11	ABCC1	rs9931487-?		4E-6				Illumina [~ 9600000] (imputed)	N
708	chr16	16219756	16219757	rs748043154	34626176	Malik R	2021-10-01	Brain	Whole-exome sequencing reveals a role of HTRA1 and EGFL8 in brain white matter hyperintensities.	White matter hyperintensity volume	17,830 individuals	NA	16p13.11		rs748043154-?	NR	4E-7		2.91	[1.79-4.03] unit increase	NR [NR]	N
709	chr16	16254625	16254626	rs4781730	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	16p13.11		rs4781730-C	0.71553	5E-8		0.0250259	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
709	chr16	16256766	16256767	rs3213473	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16p13.11	NR	rs3213473-G	0.851097327102804	7E-6	(IGP70)	0.2016	[0.11-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
709	chr16	16259595	16259596	rs41278174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p13.11		rs41278174-A	NR	2E-14		0.0481	[0.036-0.06] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
709	chr16	16259595	16259596	rs41278174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16p13.11		rs41278174-A	NR	1E-13		0.043	[0.032-0.054] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
709	chr16	16259595	16259596	rs41278174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16p13.11		rs41278174-A	NR	2E-11		0.0402	[0.028-0.052] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
709	chr16	16259595	16259596	rs41278174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16p13.11		rs41278174-A	NR	4E-11		0.0501	[0.035-0.065] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
709	chr16	16259595	16259596	rs41278174	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.02739	1E-10		0.004561	[0.0032-0.0059] unit increase	Affymetrix [NR] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p13.11	ABCC6	rs41278174-A	0.027133	7E-17		0.056482233	[0.043-0.07] unit increase	Affymetrix [93095623] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p13.11	ABCC6	rs41278174-A	0.02713	3E-15		0.05353911	[0.04-0.067] unit increase	Affymetrix [93095623] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16p13.11	ABCC6	rs41278174-A	0.027127	6E-14		0.050985605	[0.038-0.064] unit increase	Affymetrix [93095623] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.0261634	4E-16				Affymetrix, Illumina [24332387] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.026968	2E-18		0.052504	[0.041-0.064] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.0259958	1E-15				Affymetrix, Illumina [24653286] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.026766	2E-18		0.052683	[0.041-0.064] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.0260227	6E-15				Affymetrix, Illumina [24558453] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.026797	1E-17		0.051236	[0.039-0.063] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16p13.11	ABCC6	rs41278174-A		9E-14		0.051	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.02724099999999996	3E-8		0.0127377	[0.0077-0.0178] unit increase	Affymetrix [16582909] (imputed)	N
709	chr16	16259595	16259596	rs41278174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p13.11	NR	rs41278174-A	0.02724099999999996	7E-6		0.0120678	[0.0064-0.0177] unit increase	Affymetrix [16582965] (imputed)	N
709	chr16	16259595	16259596	rs41278174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p13.11		rs41278174-?	NR	8E-18				NR [~ 8900000] (imputed)	N
709	chr16	16284359	16284360	rs112414002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	16p13.11	NR	rs112414002-T	NR	1E-37		0.1023	[0.087-0.118] unit increase	Affymetrix [9000000] (imputed)	N
709	chr16	16287638	16287639	rs138760312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p13.11		rs138760312-?	NR	3E-9				NR [~ 8900000] (imputed)	N
709	chr16	16298287	16298288	rs4780614	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR2	5,363 Icelandic ancestry individuals	NA	16p13.11		rs4780614-T	0.1611	7E-57		0.40007	[0.35-0.45] unit decrease	Illumina [7506463] (imputed)	N
709	chr16	16298941	16298942	rs62030355	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR2	5,363 Icelandic ancestry individuals	NA	16p13.11		rs62030355-T	0.06524	1E-44		0.53412	[0.46-0.61] unit decrease	Illumina [7506463] (imputed)	N
709	chr16	16326170	16326171	rs144648477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.11	NR	rs144648477-A	0.188	3E-61	(Hepatitis A virus cellular receptor 2, HAVCR2.7152.5.3)	0.58	[0.5-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
709	chr16	16343686	16343687	rs62032164	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.11	NOMO3	rs62032164-C	0.225	6E-90	(Hepatitis A virus cellular receptor 2, HAVCR2.7152.5.3)	0.59	[0.53-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
709	chr16	16367612	16367613	rs202070282	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p13.11	NR	rs202070282-T	0.078	2E-49	(Hepatitis A virus cellular receptor 2, HAVCR2.7152.5.3)	0.74	[0.64-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
711	chr16	16636186	16636187	rs2316394	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p13.11	NR	rs2316394-?	NR	4E-7	(Native Hawaiian)	1.283	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
712	chr16	16730727	16730728	rs9937036	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p13.11	LOC441750	rs9937036-C	0.015	8E-7	(ALT )	0.04	[NR] U/L increase	Illumina [899892]	N
713	chr16	16899494	16899495	rs960438	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16p12.3	Intergenic	rs960438-?		9E-6		1.25329	[1.14-1.40]	Illumina [9389922] (imputed)	N
714	chr16	16957914	16957915	rs7186128	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	16p12.3	intergenic	rs7186128-G	NR	4E-7	(Additive model)	2.5	[1.70-3.50]	Affymetrix [334127]	N
714	chr16	16985540	16985541	rs74009651	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p12.3	NR	rs74009651-?		2E-6				Illumina [4322238] (imputed)	N
714	chr16	16985540	16985541	rs74009651	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p12.3	NR	rs74009651-?		5E-6				Illumina [4322238] (imputed)	N
714	chr16	16993002	16993003	rs1453514	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	16p12.3	NR	rs1453514-G	NR	1E-6		1.242236	[1.14-1.36]	Illumina [6774630] (imputed)	N
714	chr16	17027677	17027678	rs7190629	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	16p12.3	NR	rs7190629-A	0.76	5E-7		0.0494	[0.03-0.069] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
716	chr16	17177109	17177110	rs571835655	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body mass index	19,900 British ancestry individuals from 6863 families.	NA	16p12.3	intergenic	rs571835655-A	0.0011	7E-9		1.0599046	[0.7-1.42] kg/m2 decrease	Illumina [24111857] (imputed)	N
716	chr16	17177109	17177110	rs571835655	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	16p12.3	intergenic	rs571835655-A	0.0011	2E-8		7.2517734	[4.72-9.79] % decrease	Illumina [24111857] (imputed)	N
716	chr16	17191933	17191933	rs200740231	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	16p12.3	NR	rs200740231-?	NR	7E-6		0.2576	[0.15-0.37] unit increase	Illumina [at least 560000] (imputed)	N
716	chr16	17257692	17257693	rs151192482	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	16p12.3	XYLT1	rs151192482-?	NR	9E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
716	chr16	17260190	17260191	rs551640889	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	16p12.3	XYLT1	rs551640889-G	1.2E-4	5E-9		3.61	[2.01-5.21]	NR [10849711] (imputed)	N
717	chr16	17337723	17337724	rs3943418	27315593	Lang M	2016-06-14	Eur Psychiatry	Genome-wide association study of pathological gambling.	Pathological gambling	445 European ancestry cases, 986 European ancestry controls	NA	16p12.3	XYLT1	rs3943418-A	NR	7E-6	(Adjusted for PC1-5)	1.71	[1.36-2.16]	Illumina [595867]	N
717	chr16	17362828	17362829	rs74643788	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	16p12.3	NR	rs74643788-?	NR	5E-8	(EA)			Illumina [1735619]	N
717	chr16	17362828	17362829	rs74643788	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	16p12.3	NR	rs74643788-?	NR	2E-7				Illumina [1735619]	N
717	chr16	17367861	17367862	rs3764250	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16p12.3	XYLT1	rs3764250-G	NR	6E-6		0.0237226	[0.013-0.034] unit decrease	Illumina [13520550] (imputed)	N
717	chr16	17383776	17383777	rs76170904	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	16p12.3	NR	rs76170904-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
718	chr16	17447999	17448000	rs59587833	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	16p12.3	XYLT1	rs59587833-A	NR	5E-6		1.039	[1.022- 1.057]	Illumina [6740241] (imputed)	N
718	chr16	17474059	17474060	rs35003134	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	16p12.3	XYLT1	rs35003134-A	0.64	9E-6		0.5	[0.28-0.72] unit increase	Illumina [5833901] (imputed)	N
718	chr16	17493123	17493124	rs74772983	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	16p12.3	XYLT1	rs74772983-A	0.9281	9E-6		1.2448313		Illumina [8265319] (imputed)	N
718	chr16	17516862	17516863	rs7203032	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p12.3	XYLT1	rs7203032-A	0.1571	5E-7		0.0474	[0.029-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
718	chr16	17524224	17524225	rs117241547	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	16p12.3	NR	rs117241547-T	0.01284	1E-7		0.7132	[0.45-0.98] unit increase	Illumina [10677593] (imputed)	N
718	chr16	17530869	17530870	rs61064486	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	16p12.3	NR	rs61064486-T	0.1953	6E-7		0.9679	[0.51-1.43] unit decrease	Illumina [at least 567677] (imputed)	N
718	chr16	17544865	17544866	rs77981494	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	16p12.3	NR	rs77981494-C		1E-6		0.5178	[0.31-0.73] SD units increase	NR [10700000] (imputed)	N
718	chr16	17558965	17558966	rs9796795	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	16p12.3	NR	rs9796795-A	0.703	3E-9		0.0104259	[0.007-0.0139] unit increase	NR [9732723] (imputed)	N
718	chr16	17562882	17562883	rs4781978	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16p12.3	XYLT1	rs4781978-C	0.7896	3E-8		0.016089858	[0.01-0.022] unit increase	Affymetrix [11515109] (imputed)	N
719	chr16	17565842	17565843	rs72767608	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	16p12.3	NR	rs72767608-C		8E-6		0.2476	[0.14-0.36] SD units decrease	NR [10700000] (imputed)	N
719	chr16	17570219	17570220	rs9922607	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p12.3		rs9922607-C	0.793	2E-15		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
719	chr16	17570219	17570220	rs9922607	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	16p12.3	XYLT1, NPIPA8	rs9922607-T		5E-8		0.976	[NR]	Affymetrix [up to 79000000] (imputed)	N
719	chr16	17570219	17570220	rs9922607	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p12.3	NR	rs9922607-T	0.2	5E-15		0.0106734	[0.008-0.0134] unit decrease	NR [9732723] (imputed)	N
719	chr16	17570219	17570220	rs9922607	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p12.3	NR	rs9922607-T	0.2	3E-12		0.022159314	[0.016-0.028] unit decrease	NR [~ 10000000] (imputed)	N
719	chr16	17623046	17623047	rs116912469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGN	5,354 Icelandic ancestry individuals	NA	16p12.3		rs116912469-G	0.02873	2E-54		0.831095	[0.73-0.94] unit decrease	Illumina [7506463] (imputed)	N
719	chr16	17639570	17639571	rs75421555	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGN	5,354 Icelandic ancestry individuals	NA	16p12.3		rs75421555-G	0.01167	4E-12		0.587693	[0.42-0.75] unit decrease	Illumina [7506463] (imputed)	N
720	chr16	17736417	17736418	rs76720126	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	16p12.3	NR	rs76720126-C	0.0917	3E-6		0.2462	[0.14-0.35] unit decrease	Illumina [10677593] (imputed)	N
720	chr16	17739691	17739692	rs12445126	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		16p12.3	XYLT1	rs12445126-G	0.09	2E-6		0.088	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
720	chr16	17762106	17762107	rs34990049	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs34990049-G	0.0662	1E-9	(PEPD)	0.08034	NR unit increase	Illumina [1671387] (imputed)	N
720	chr16	17807170	17807171	rs184417093	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	16p12.3	NR	rs184417093-?	NR	9E-6		3.5772	[1.06-6.09] unit increase	Illumina [at least 560000] (imputed)	N
720	chr16	17807927	17807928	rs117216216	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAVCR2	5,363 Icelandic ancestry individuals	NA	16p12.3		rs117216216-C	0.01132	1E-34		1.05265	[0.88-1.22] unit decrease	Illumina [7506463] (imputed)	N
721	chr16	17832999	17833000	rs140178601	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16p12.3	XYLT1, NPIP	rs140178601-T	0.04	6E-7	(EA)	0.72	[0.43-1.01] unit increase	Illumina [up to 13042663] (imputed)	N
721	chr16	17910751	17910752	rs11861766	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p12.3	Intergenic	rs11861766-G	0.3595	3E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
721	chr16	17914134	17914135	rs4300633	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p12.3	NR	rs4300633-T	0.34	5E-7		0.0902	[0.055-0.125] unit decrease	Illumina [11133794] (imputed)	N
721	chr16	17922490	17922491	rs7500242	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p12.3	Intergenic	rs7500242-T	0.6536	1E-8	(MTAG)	0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
722	chr16	17971122	17971136	rs143893430	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p12.3	NR	rs143893430-?	NR	3E-6		0.0883	[0.051-0.125] unit decrease	Illumina [11133794] (imputed)	N
722	chr16	18013919	18013920	rs76853196	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p12.3		rs76853196-C	0.685	2E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
722	chr16	18024849	18024850	rs9922516	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.3	intergenic	rs9922516-G	0.0060	9E-6	(ALT )	0.02	[NR] U/L increase	Illumina [899892]	N
722	chr16	18048709	18048710	rs9302534	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p12.3	NR	rs9302534-T	0.63	2E-7		0.0912	[0.057-0.126] unit increase	Illumina [11133794] (imputed)	N
722	chr16	18050925	18050926	rs9941217	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p12.3	NR	rs9941217-G	0.352	1E-10		0.00728554	[0.0051-0.0095] unit decrease	NR [9732723] (imputed)	N
722	chr16	18050925	18050926	rs9941217	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p12.3	NR	rs9941217-G	0.352204	4E-12	(Conditioned on chr16:17570220)	0.01855667	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
722	chr16	18050925	18050926	rs9941217	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	16p12.3	intergenic	rs9941217-C	NR	9E-7	(females)	0.128	[0.077-0.179] unit increase	Illumina [7531543] (imputed)	N
722	chr16	18058547	18058548	rs77878475	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	16p12.3	NOMO2	rs77878475-A	0.0858	3E-10		0.0256	[0.018-0.034] unit decrease	Illumina [~ 250000] (imputed)	N
722	chr16	18058547	18058548	rs77878475	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16p12.3	NPIPA8	rs77878475-A	0.0856	3E-11		0.025840854	[0.018-0.033] unit decrease	Affymetrix [11514654] (imputed)	N
722	chr16	18058547	18058548	rs77878475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16p12.3		rs77878475-?	NR	2E-8				NR [~ 8900000] (imputed)	N
722	chr16	18062135	18062136	rs7194356	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16p12.3	NR	rs7194356-C	0.895432401869159	7E-6	(IGP48)	0.2261	[0.13-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
723	chr16	18100490	18100491	rs9921472	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	16p12.3	NR	rs9921472-A	0.103316	6E-6				Illumina [5378266] (imputed)	N
724	chr16	18264836	18264837	rs11864325	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	16p12.3	NR	rs11864325-?	NR	4E-16		0.23	[0.17-0.29] unit increase	Illumina [at least 830937] (imputed)	N
724	chr16	18266346	18266347	rs7199186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p12.3	NR	rs7199186-?	NR	5E-6		4.571	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
726	chr16	18576256	18576257	rs13337852	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder or asymptomatic neurocognitive impairment)	155 African American asymptomatic neurocognitive impairment cases, 150 European ancestry asymptomatic neurocognitive impairment cases, 49 Hispanic asymptomatic neurocognitive impairment cases, 5 asymptomatic neurocognitive impairment cases, 30 African American mild neurocognitive disorder cases, 45 European ancestry mild neurocognitive disorder cases, 17 Hispanic mild neurocognitive disorder cases, 297 African American controls,  230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	16p12.3	NR	rs13337852-?		7E-6		1.547	[NR]	Affymetrix [NR]	N
726	chr16	18576256	18576257	rs13337852	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (asymptomatic neurocogntive impairment)	155 African American cases, 150 European ancestry cases, 49 Hispanic cases, 5 cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	16p12.3	intergenic	rs13337852-?		9E-6		1.583	[NR]	Affymetrix [NR]	N
726	chr16	18579523	18579524	rs540601893	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	16p12.3		rs540601893-?	NR	1E-8		3.2093	[2.11-4.31] unit increase	Affymetrix [NR] (imputed)	N
728	chr16	18768775	18768776	rs117059302	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p12.3	RPS15A	rs117059302-G	0.017	5E-18	(Hepatitis A virus cellular receptor 2, HAVCR2.7152.5.3)	0.85	[0.65-1.05] unit increase	Affymetrix [10572788] (imputed)	N
728	chr16	18778524	18778525	rs2606433	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		16p12.3	intergenic	rs2606433-T	0.0447917	7E-6		0.891274	[0.51-1.27] unit decrease	Illumina [640625] (imputed)	N
728	chr16	18779835	18779836	rs2606432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p12.3	NR	rs2606432-C	0.53103	4E-10		0.012335	[0.0085-0.0162] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
728	chr16	18788518	18788519	rs9284313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p12.3		rs9284313-A	NR	6E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
728	chr16	18817961	18817962	rs3751745	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p12.3	SMG1	rs3751745-T	0.912295	1E-9		0.0198706	[0.013-0.026] unit decrease	NR [13737936] (imputed)	N
728	chr16	18821190	18821191	rs2606558	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16p12.3	RPS15A, ARL6IP1, SMG1	rs2606558-?		9E-10				Affymetrix, Illumina [NR] (imputed)	N
728	chr16	18823886	18823887	rs188179472	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	16p12.3	SMG1	rs188179472-T	NR	7E-6		0.02822	[0.016-0.041] unit increase	Illumina [NR] (imputed)	N
729	chr16	18928465	18928466	rs71382581	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p12.3		rs71382581-?	NR	1E-10		0.023129	[0.016-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
729	chr16	18934723	18934724	rs71382583	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p12.3		rs71382583-?	NR	9E-9				NR [~ 8900000] (imputed)	N
729	chr16	18958514	18958515	rs8048623	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	16p12.3	NR	rs8048623-?	NR	5E-8	(Eubacterium_eligens)	0.167614	[0.11-0.23] unit increase	Illumina [5293637] (imputed)	N
729	chr16	19005179	19005180	rs12449097	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale)	3,967 Finnish ancestry individuals	NA	16p12.3	TMC7	rs12449097-?		3E-8		1.13	[NR] unit decrease	Illumina [~ 9600000] (imputed)	N
729	chr16	19005210	19005211	rs144721899	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	16p12.3	TMC7	rs144721899-G	0.001	6E-9		4.652	NR	Affymetrix, Illumina [39127678] (imputed)	N
730	chr16	19028548	19028549	rs4265793	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	16p12.3	TMC7	rs4265793-T	NR	6E-6	(AA)	1.22	[0.65-1.79] unit decrease	Affymetrix [~ 2300000] (imputed)	N
730	chr16	19064629	19064629	rs11409750	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		16p12.3	TMC7	rs11409750-CT	0.92	1E-6		0.79	[0.47-1.11] unit decrease	Illumina [640625] (imputed)	N
731	chr16	19149995	19149996	rs59333122	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p12.3	CTD-2349B8.1	rs59333122-A	0.2724	2E-9		0.1069	[0.072-0.142] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
731	chr16	19155287	19155288	rs16971637	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		16p12.3	ITPRIPL2	rs16971637-A	0.959	3E-6		0.033	[0.019-0.047] dioptres decrease	NR [5901671] (imputed)	N
731	chr16	19156015	19156016	rs8062326	21876473	Lydall GJ	2011-08-26	Psychiatr Genet	Confirmation of prior evidence of genetic susceptibility to alcoholism in a genome-wide association study of comorbid alcoholism and bipolar disorder.	Alcohol dependence	506 European ancestry cases, 510 European ancestry controls	NA	16p12.3	SYT17	rs8062326-T	0.02	4E-6	(BPALC)			Affymetrix [372193]	N
731	chr16	19209609	19209610	rs1544357	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Streptacidiphilus abundance in stool	5,959 Finnish ancestry individuals	NA	16p12.3		rs1544357-T	0.406329	2E-8		0.0256667	[0.017-0.035] unit decrease	Illumina [7980478] (imputed)	N
731	chr16	19244423	19244424	rs6497337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p12.3	Intergenic	rs6497337-A	0.3487	2E-11	(MTAG)	0.0095	[0.0068-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
731	chr16	19249585	19249586	rs8061919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p12.3		rs8061919-C	NR	1E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
731	chr16	19264363	19264364	rs62025407	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p12.3	NR	rs62025407-?	NR	2E-6		0.10893015	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
731	chr16	19265884	19265885	rs2352795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.3		rs2352795-T	0.6134	1E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
731	chr16	19267143	19267144	rs9924031	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.3		rs9924031-C	0.3828	2E-10		0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
732	chr16	19268836	19268837	rs732999	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	16p12.3	SYT17	rs732999-?	NR	3E-9		0.0147933	[0.0099-0.0197] unit increase	Affymetrix [25921788] (imputed)	N
732	chr16	19274551	19274552	rs75774303	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p12.3	NR	rs75774303-?	NR	5E-7		0.4062	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
732	chr16	19277492	19277493	rs6497339	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16p12.3	SYT17	rs6497339-A	0.4536	3E-11		0.063	[0.044-0.082] unit increase	NR [7784415] (imputed)	N
732	chr16	19278624	19278625	rs7197580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p12.3		rs7197580-?	NR	2E-8				NR [~ 8900000] (imputed)	N
732	chr16	19279379	19279380	rs1051547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.3		rs1051547-?	NR	6E-13				NR [~ 8900000] (imputed)	N
732	chr16	19279463	19279464	rs11343	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	16p12.3	COQ7	rs11343-T	0.454	9E-11		1.07	[1.05-1.10]	Illumina [11933700] (imputed)	N
732	chr16	19279463	19279464	rs11343	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	16p12.3	SYT17, CLEC19A	rs11343-?	NR	1E-8		1.096	[1.062-1.131]	Illumina [12438219] (imputed)	N
732	chr16	19279547	19279548	rs9939257	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p12.3	SYT17	rs9939257-T	0.5101	4E-15		0.0165	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
732	chr16	19316810	19316811	rs115068712	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	16p12.3	CLEC19A	rs115068712-A	0.0137	7E-6		3.111	[1.899-5.098]	Affymetrix, Illumina [14074516] (imputed)	N
732	chr16	19348523	19348524	rs1156327	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	16p12.3	CLEC19A	rs1156327-?	NR	3E-10		1.45	[1-1.9] unit increase	Affymetrix [2135235] (imputed)	N
732	chr16	19352684	19352685	rs2353663	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	16p12.3	CLEC19A	rs2353663-T	0.055358	7E-9		6.035612	[4.00-8.07] unit increase	Illumina [9469131] (imputed)	N
732	chr16	19375296	19375297	rs12443654	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	16p12.3	NR	rs12443654-?	NR	4E-6		0.07	NR unit increase	Affymetrix [388620]	N
732	chr16	19380080	19380081	rs9930193	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	16p12.3	NR	rs9930193-?	NR	5E-6		0.07	NR unit increase	Affymetrix [388620]	N
733	chr16	19404644	19404645	rs4780805	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.3	MIR16	rs4780805-?	NR	7E-6	(PC 40:6)	0.21989061	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
733	chr16	19404644	19404645	rs4780805	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	16p12.3	TMC5	rs4780805-A	0.15	8E-7		0.19	[0.11-0.27] unit decrease	Illumina [2380486] (imputed)	N
733	chr16	19435028	19435029	rs118099348	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16p12.3	Intergenic	rs118099348-T	NR	1E-9	(between families)	6.05	unit increase	Affymetrix [up to 15107142] (imputed)	N
733	chr16	19446755	19446756	rs11646732	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p12.3	TMC5	rs11646732-G	0.822119708994709	4E-7	(G_Aestuariispira_RNT)	0.320828	[0.2-0.44] unit decrease	Illumina [7711310] (imputed)	N
733	chr16	19446755	19446756	rs11646732	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	16p12.3	TMC5	rs11646732-A	NR	8E-7	(AA)			Illumina [up to 11995908] (imputed)	N
733	chr16	19460841	19460842	rs6497373	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	16p12.3	TMC5	rs6497373-A	0.1571	8E-6		1.0449	[0.59-1.5] unit decrease	Affymetrix [NR] (imputed)	N
733	chr16	19502662	19502663	rs78926797	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	16p12.3	TMC5	rs78926797-A	0.6	2E-6		0.3	[0.18-0.42] unit decrease	Illumina [12910578] (imputed)	N
734	chr16	19555546	19555547	rs2005396	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.3	NR	rs2005396-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
734	chr16	19580620	19580621	rs117430025	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	16p12.3	NR	rs117430025-A	0.09	9E-7		0.82	NR	Affymetrix, Illumina [6957974] (imputed)	N
734	chr16	19582474	19582475	rs226876	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p12.3	NR	rs226876-G	0.4062	3E-8				NR [9056863] (imputed)	N
734	chr16	19600404	19600405	rs226867	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 204)	19,670 European ancestry individuals	NA	16p12.3		rs226867-?	NR	2E-8				NR [9705931] (imputed)	N
734	chr16	19620373	19620374	rs115432071	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	16p12.3	C16orf62	rs115432071-T		9E-6		0.197	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
734	chr16	19620373	19620374	rs115432071	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	16p12.3	C16orf62	rs115432071-T		3E-7	(men)	0.346	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
734	chr16	19635675	19635676	rs9889138	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	16p12.3	C16orf62	rs9889138-G	NR	8E-7		1.83	percent increase	Affymetrix [8762422] (imputed)	N
734	chr16	19642669	19642670	rs72767578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16p12.3	C16orf62	rs72767578-A	0.1196	4E-6		0.0872	[0.05-0.124] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
734	chr16	19642669	19642670	rs72767578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	16p12.3	C16orf62	rs72767578-A	0.1192	6E-6		0.0825	[0.047-0.118] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
735	chr16	19691582	19691583	rs1548445	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Barrett's esophagus x pack-years of smoking exposure interaction	3,104 European ancestry cases, 2,182 European ancestry controls	NA	16p12.3	C16orf62	rs1548445-G	0.06	8E-7		1.02	[NR]	Illumina [993501]	N
735	chr16	19709750	19709751	rs56100071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.3		rs56100071-?	NR	6E-8				NR [~ 8900000] (imputed)	N
736	chr16	19800212	19800213	rs7191155	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.3	NR	rs7191155-T	NR	2E-8		0.023	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
736	chr16	19808162	19808163	rs7185636	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	16p12.3	IQCK	rs7185636-T	0.8200000000000001	2E-8		1.0869565	[1.05-1.12]	Affymetrix, Illumina [11480632] (imputed)	N
736	chr16	19808951	19808952	rs72769565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p12.3		rs72769565-?	NR	6E-8				NR [~ 8900000] (imputed)	N
736	chr16	19809744	19809745	rs4782285	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	16p12.3	IQCK	rs4782285-A	0.1346	4E-6		0.0554	[0.032-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr16	19809744	19809745	rs4782285	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.3	IQCK	rs4782285-A	0.1343	2E-10		0.0642	[0.044-0.084] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr16	19809744	19809745	rs4782285	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.3	IQCK	rs4782285-A	0.1343	2E-10		0.0642	[0.044-0.084] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr16	19824637	19824638	rs950928	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Diastolic blood pressure (education interaction)	1,518 African American individuals with high school education, 731 African American individuals with college education, 328 African American individuals with less than high school education	NA	16p12.3	IQCK	rs950928-?	0.36	4E-7		1.1	[0.67-1.53] mmHg decrease	Illumina [115834]	N
736	chr16	19824637	19824638	rs950928	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Diastolic blood pressure	2,577 African American Individuals	NA	16p12.3	IQCK	rs950928-?	0.36	3E-6		1.04	mmHg decrease	Illumina [115834]	N
736	chr16	19826533	19826534	rs8056711	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Diastolic blood pressure (education interaction)	1,518 African American individuals with high school education, 731 African American individuals with college education, 328 African American individuals with less than high school education	NA	16p12.3	IQCK	rs8056711-?	0.36	4E-7		1.1	[0.67-1.53] mmHg decrease	Illumina [115834]	N
736	chr16	19826533	19826534	rs8056711	31134134	Hollister BM	2019-05-10	Front Genet	A Social Determinant of Health May Modify Genetic Associations for Blood Pressure: Evidence From a SNP by Education Interaction in an African American Population.	Diastolic blood pressure	2,577 African American Individuals	NA	16p12.3	IQCK	rs8056711-?	0.36	3E-6		1.04	mmHg decrease	Illumina [115834]	N
736	chr16	19860108	19860109	rs78522363	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs78522363-T	0.01394	2E-9	(MX1)	0.05739	NR unit increase	Illumina [1671387] (imputed)	N
736	chr16	19904343	19904344	rs66674044	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p12.3	NR	rs66674044-T	0.1427	2E-12		1.0615711	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
736	chr16	19904343	19904344	rs66674044	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p12.3	NR	rs66674044-?	NR	1E-8		0.18027	[0.12-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
736	chr16	19916894	19916895	rs9941245	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p12.3	NA	rs9941245-G	0.1982	9E-10	(Female)	1.059322	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
736	chr16	19922104	19922104	rs66858270	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	16p12.3	NR	rs66858270-GT	0.1738	2E-6		0.189	[0.11-0.27] unit increase	Illumina [10677593] (imputed)	N
737	chr16	19923689	19923689	rs397778224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p12.3	AC134300.1	rs397778224-T	0.8305	5E-9		0.05	[0.033-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr16	19923689	19923689	rs397778224	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16p12.3	AC134300.1	rs397778224-T	0.8324	5E-7		0.0544	[0.033-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr16	19933510	19933511	rs72771049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.3	NR	rs72771049-?	NR	4E-32				Affymetrix [~ 8270000] (imputed)	N
737	chr16	19933599	19933600	rs12444979	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p12.3	GPRC5B, IQCK	rs12444979-C	0.87	3E-21		0.17	[0.11-0.23] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
737	chr16	19935072	19935073	rs12446554	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p12.3	GPRC5B	rs12446554-G	0.86	4E-12	(Overweight)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.3	NA	rs12446632-A	0.1371	3E-50		0.0353	[0.031-0.04] unit decrease	NR [~ 27400000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p12.3	NA	rs12446632-A	0.1371	3E-50		0.0353	[0.031-0.04] unit decrease	NR [~ 27400000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p12.3	NA	rs12446632-A	0.1371	3E-50		0.0353	[0.031-0.04] unit decrease	NR [~ 27400000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.3	NR	rs12446632-G	NR	9E-20		0.034	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8657	3E-6	(men)	0.0417	[0.024-0.059] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8641	3E-9		0.0355	[0.024-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8622	1E-9	(EA)	0.0371	[0.025-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-?	NR	6E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-?	NR	5E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-?	NR	1E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8641	5E-6	(women)	0.031	[0.018-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8641	3E-10		0.0333	[0.023-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8641	1E-6	(men)	0.0383	[0.023-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8622	6E-11	(EA)	0.0358	[0.025-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8622	3E-7	(EA, men)	0.0419	[0.026-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.3	GPRC5B	rs12446632-G	0.8622	3E-6	(EA, women)	0.0326	[0.019-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	7E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	3E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	2E-6		0.0501	[0.029-0.071] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	4E-7		0.0297	[0.018-0.041] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	3E-6	(men)	0.0375	[0.022-0.053] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	2E-9	(men)	0.0423	[0.029-0.056] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.3	GPR139	rs12446632-A	0.1334	1E-10		0.0328	[0.023-0.043] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	16p12.3	GPRC5B	rs12446632-G	NR	2E-6	(additive model)	0.028	[0.016-0.04] unit increase	NR [9288881] (imputed)	N
737	chr16	19935388	19935389	rs12446632	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	16p12.3	NR	rs12446632-G	NR	1E-9				Affymetrix, Illumina [2499691] (imputed)	N
737	chr16	19935388	19935389	rs12446632	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p12.3	NR	rs12446632-A	0.133780488233125	1E-26		0.04259146	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.3	GPRC5B	rs12446632-G	0.866	2E-19		0.04	[0.031-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
737	chr16	19935388	19935389	rs12446632	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.3	GPRC5B	rs12446632-G	0.866	2E-10	(EA, men)	0.039	[0.027-0.05] kg/m2 increase	Affymetrix, Illumina [2550021]	N
737	chr16	19935388	19935389	rs12446632	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.3	GPRC5B	rs12446632-G	0.865	1E-18	(EA)	0.04	[0.031-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
737	chr16	19935388	19935389	rs12446632	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.3	GPRC5B	rs12446632-G	0.865	1E-13	(EA, women)	0.043	[0.032-0.055] kg/m2 increase	Affymetrix, Illumina [2550021]	N
737	chr16	19935388	19935389	rs12446632	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.3	GPRC5B	rs12446632-A	0.136	9E-7	(EA, men)	0.0342	[0.02-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.3	GPRC5B	rs12446632-A	0.136	5E-13	(EA)	0.0361	[0.026-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.3	GPRC5B	rs12446632-A	0.136	1E-9	(EA, women)	0.0389	[0.026-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.3	GPRC5B	rs12446632-A	0.1353	4E-10	(EA,women)	0.0428	[0.029-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.3	GPRC5B	rs12446632-A	0.1353	1E-11	(EA)	0.0356	[0.025-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
737	chr16	19935388	19935389	rs12446632	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16p12.3	GPRC5B	rs12446632-A	0.13	1E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
737	chr16	19935388	19935389	rs12446632	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p12.3	GPRC5B	rs12446632-G	0.86	2E-10	(Obesity class I)	1.09	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
737	chr16	19935762	19935763	rs114285994	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	16p12.3	GPRC5B	rs114285994-G	0.87	1E-10		0.074	[0.05-0.098] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
737	chr16	19935762	19935763	rs114285994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p12.3		rs114285994-?	NR	6E-18				NR [~ 8900000] (imputed)	N
737	chr16	19941556	19941557	rs55880046	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p12.3	GPRC5B	rs55880046-T	0.857664	4E-50		0.0298545	[0.026-0.034] unit increase	Affymetrix [12370749]	N
737	chr16	19942926	19942927	rs7204864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.3		rs7204864-?	NR	3E-31				NR [~ 8900000] (imputed)	N
737	chr16	19944362	19944363	rs11639988	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p12.3	GPRC5B	rs11639988-A	0.86	4E-9	(Obesity class II)	1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
737	chr16	19960319	19960320	rs4527026	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.3	GPRC5B	rs4527026-A	0.013	5E-6	(TNF-a )	0.03	[NR] pg/mL increase	Illumina [899892]	N
737	chr16	19975406	19975407	rs8054079	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16p12.3	GPR139	rs8054079-T	0.1369	7E-11		0.0654	[0.046-0.085] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr16	19975417	19975418	rs8054082	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p12.3	GPR139	rs8054082-C	0.859126	3E-18		0.0174136	[0.013-0.021] unit increase	Affymetrix [12370749]	N
737	chr16	19979333	19979334	rs8046312	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	16p12.3	NR	rs8046312-?	NR	3E-6		7.686	NR z score increase	Affymetrix, Illumina [10031233] (imputed)	N
737	chr16	19979333	19979334	rs8046312	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	16p12.3	GPR139	rs8046312-A	0.81	4E-6		0.042	[0.024-0.06] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
737	chr16	19987635	19987636	rs28651105	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	16p12.3		rs28651105-G	0.2165	5E-8		0.01621	[0.01-0.022] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
737	chr16	19988851	19988852	rs9940317	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	16p12.3	GPRC5B, GPR139	rs9940317-?		2E-15				Illumina [9499600] (imputed)	N
737	chr16	19988851	19988852	rs9940317	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	16p12.3	GPRC5B, GPR139	rs9940317-?	NR	1E-7	(weight)	0.0134204	[0.0084-0.0184] unit increase	Illumina [9499600] (imputed)	N
737	chr16	19990898	19990899	rs73546249	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	16p12.3	NR	rs73546249-T	0.01	2E-7	(Jaccard metric)	5.038183	NR z-score increase	Illumina [5293637] (imputed)	N
737	chr16	19992995	19992996	rs1011939	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	16p12.3	GPR139	rs1011939-G	0.31	3E-9		0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
737	chr16	20002522	20002523	rs72771074	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	16p12.3	Intergenic	rs72771074-C	NR	5E-8		0.007	[0.005-0.009] unit increase	NR [16213998]	N
737	chr16	20006744	20006745	rs67501351	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p12.3	NR	rs67501351-C	0.7451	5E-11		1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
737	chr16	20013792	20013793	rs2764771	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16p12.3	NR	rs2764771-A	0.307	3E-8		0.00801632	[0.0052-0.0108] unit increase	NR [~ 9732723] (imputed)	N
737	chr16	20013792	20013793	rs2764771	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16p12.3	NR	rs2764771-A	0.307	4E-10		0.009890596	[0.0068-0.013] unit increase	NR [~ 10000000] (imputed)	N
737	chr16	20031204	20031205	rs2764743	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16p12.3	NR	rs2764743-T	0.936472894262295	8E-7	(IGP41)	0.346	[0.21-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
737	chr16	20046114	20046115	rs2045457	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16p12.3	GPR139, GPRC5B	rs2045457-G	0.311361	6E-9		0.016194	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
737	chr16	20046114	20046115	rs2045457	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	16p12.3	GPR139	rs2045457-?		1E-16				Illumina [9499600] (imputed)	N
737	chr16	20050465	20050466	rs868554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p12.3		rs868554-G	NR	3E-19		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
737	chr16	20050465	20050466	rs868554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.3	NR	rs868554-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
738	chr16	20056992	20056993	rs12596252	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12596252-A		3E-6				Illumina [2373249] (imputed)	N
738	chr16	20057660	20057661	rs1902813	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs1902813-C		3E-6				Illumina [2373249] (imputed)	N
738	chr16	20059676	20059677	rs12926725	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12926725-T		3E-6				Illumina [2373249] (imputed)	N
738	chr16	20060652	20060653	rs2764772	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	16p12.3	NR	rs2764772-T	0.67	8E-12		1.09	NR	NR [8853336] (imputed)	N
738	chr16	20060652	20060653	rs2764772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	16p12.3	NR	rs2764772-A	NR	4E-9		0.0157	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
738	chr16	20060652	20060653	rs2764772	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	16p12.3	NR	rs2764772-A	0.334423	1E-9		0.00828619	[0.0056-0.011] unit increase	Affymetrix [16578495] (imputed)	N
738	chr16	20060652	20060653	rs2764772	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16p12.3	NR	rs2764772-A	0.33422700000000005	3E-24		0.031954	[0.026-0.038] unit increase	Affymetrix [16577313] (imputed)	N
738	chr16	20060652	20060653	rs2764772	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	16p12.3	NR	rs2764772-A	0.33442099999999997	9E-19		0.0189214	[0.015-0.023] unit increase	Affymetrix [16583148] (imputed)	N
738	chr16	20060652	20060653	rs2764772	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	16p12.3	NR	rs2764772-A	0.33404999999999996	5E-33		0.0370436	[0.031-0.043] unit increase	Affymetrix [16577424] (imputed)	N
738	chr16	20060829	20060830	rs12931939	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12931939-T		6E-6				Illumina [2373249] (imputed)	N
738	chr16	20065470	20065471	rs139083043	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	16p12.3	NR	rs139083043-?	NR	1E-6		0.2401	[0.14-0.34] unit increase	Illumina [at least 560000] (imputed)	N
738	chr16	20065679	20065680	rs72772745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.3	GPR139	rs72772745-T	0.8898	4E-6		0.0542	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
738	chr16	20065679	20065680	rs72772745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.3	GPR139	rs72772745-T	0.8898	4E-6		0.0542	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
738	chr16	20089753	20089754	rs10521114	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs10521114-A		8E-6				Illumina [2373249] (imputed)	N
738	chr16	20090644	20090645	rs10521115	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs10521115-A		8E-6				Illumina [2373249] (imputed)	N
738	chr16	20094053	20094054	rs7201408	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs7201408-A		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20094545	20094546	rs12924103	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12924103-T		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20094885	20094886	rs7185264	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs7185264-A		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20095627	20095628	rs11647507	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs11647507-A		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20100369	20100370	rs12926729	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12926729-A		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20109652	20109653	rs11642377	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs11642377-A		7E-6				Illumina [2373249] (imputed)	N
738	chr16	20122289	20122290	rs2608200	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs2608200-A		6E-6				Illumina [2373249] (imputed)	N
738	chr16	20123514	20123515	rs6497436	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs6497436-T		6E-6				Illumina [2373249] (imputed)	N
738	chr16	20126973	20126974	rs12919130	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	16p12.3	NR	rs12919130-A		2E-6				Illumina [2373249] (imputed)	N
738	chr16	20178589	20178590	rs4072617	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Metabolic syndrome	1,211 Korean ancestry female cases, 639 Korean ancestry female controls	1,065 Korean ancestry female cases, 1,053 Korean ancestry female controls	16p12.3	GPR139	rs4072617-A	0.19	3E-6		1.41	[1.22-1.62]	Affymetrix [NR] (imputed)	N
739	chr16	20230174	20230175	rs148753653	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16p12.3	GPR139, GP2, UMOD, PDILT	rs148753653-?	NR	6E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
739	chr16	20230174	20230175	rs148753653	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (1df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16p12.3	GPR139, GP2, UMOD, PDILT	rs148753653-A	0.9887	2E-8	(African)	9.399	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
739	chr16	20244779	20244780	rs9921767	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	16p12.3	intergenic	rs9921767-A	NR	7E-6				Illumina [up to 3951530] (imputed)	N
739	chr16	20245282	20245283	rs4432271	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p12.3	GP2	rs4432271-C	0.131408	9E-17		0.0175304	[0.013-0.022] unit decrease	Affymetrix [12370749]	N
739	chr16	20245282	20245283	rs4432271	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p12.3	GP2	rs4432271-C	0.131408	2E-8		0.0115565	[0.0075-0.0156] unit decrease	Affymetrix [12370749]	N
739	chr16	20245282	20245283	rs4432271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.3		rs4432271-?	NR	7E-13				NR [~ 8900000] (imputed)	N
739	chr16	20248465	20248466	rs6497451	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p12.3	NA	rs6497451-T	0.8577	4E-18		0.022	[0.017-0.027] unit increase	NR [~ 27400000] (imputed)	N
739	chr16	20254874	20254875	rs12596903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16p12.3		rs12596903-C	0.176027	7E-12		0.0242678	[0.017-0.031] unit decrease	Illumina [13479924] (imputed)	N
739	chr16	20255096	20255097	rs4238585	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p12.3	GPR139, GP2	rs4238585-T	0.88	1E-17		0.028	[0.022-0.034] unit increase	Illumina [6108953] (imputed)	N
739	chr16	20255122	20255123	rs11074446	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.3	NA	rs11074446-T	0.8534	4E-19		0.0214	[0.017-0.026] unit increase	NR [~ 27400000] (imputed)	N
739	chr16	20255122	20255123	rs11074446	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p12.3	NA	rs11074446-T	0.8534	4E-19		0.0214	[0.017-0.026] unit increase	NR [~ 27400000] (imputed)	N
739	chr16	20255122	20255123	rs11074446	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.3	NR	rs11074446-T	NR	6E-12		0.025	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
739	chr16	20257866	20257867	rs12597579	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	16p12.3	GP2	rs12597579-C	0.78	6E-7		0.0316	[0.019-0.044] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
739	chr16	20257866	20257867	rs12597579	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	16p12.3	GP2	rs12597579-C	0.80	1E-8		4.09	[2.21-5.97] % increase	Affymetrix, Illumina [2474474] (imputed)	N
739	chr16	20258431	20258432	rs12597682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	16p12.3		rs12597682-A	0.176417	2E-13		0.0308294	[0.023-0.039] unit decrease	Illumina [13479178] (imputed)	N
739	chr16	20258431	20258432	rs12597682	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p12.3	GPR139, GP2	rs12597682-A	0.178	8E-12	(Japanese)	0.03	[0.022-0.038] unit decrease	Illumina [6108953] (imputed)	N
739	chr16	20259934	20259935	rs57508503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p12.3		rs57508503-A	NR	2E-21		0.0251	[0.02-0.03] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
739	chr16	20260594	20260595	rs59673987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.3	NR	rs59673987-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
739	chr16	20262775	20262776	rs8045740	30952852	Jones SE	2019-04-05	Nat Commun	Genetic studies of accelerometer-based sleep measures yield new insights into human sleep behaviour.	Sleep (number of episodes)	84,810 European ancestry individuals	4,401 European ancestry individuals	16p12.3	GPR139	rs8045740-G	0.868	6E-14		0.052	[0.038-0.066] unit increase	Affymetrix [11977111] (imputed)	N
739	chr16	20297021	20297022	rs4398116	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs4398116-G	0.0122	1E-8	(HMOX1)	0.02597	NR unit increase	Illumina [1671387] (imputed)	N
740	chr16	20320086	20320087	rs4078023	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	16p12.3	GP2	rs4078023-T	0.98	3E-7		0.03292	[0.02-0.045] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
740	chr16	20321466	20321467	rs12444232	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	16p12.3	Intergenic	rs12444232-?	NR	2E-6		1.996	[NR]	Affymetrix [492217] (imputed)	N
740	chr16	20323167	20323168	rs117267808	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	16p12.3	NR	rs117267808-G	0.9209	6E-12		0.1103	[0.079-0.142] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
740	chr16	20323167	20323168	rs117267808	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	16p12.3		rs117267808-A	0.077401796	7E-15		1.1281587	[1.094448277-1.162907503]	Illumina [8919992] (imputed)	N
740	chr16	20323167	20323168	rs117267808	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16p12.3	GP2	rs117267808-A	0.078	5E-17		1.11	[1.08-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
740	chr16	20323167	20323168	rs117267808	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	16p12.3	GP2	rs117267808-A	0.08	3E-12		1.12	1.08-1.16	Illumina [12557761] (imputed)	N
740	chr16	20331736	20331737	rs73541251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16p12.3		rs73541251-G	0.074274359	6E-11		0.11291053	[0.079-0.147] unit increase	Illumina [13429769] (imputed)	N
740	chr16	20331736	20331737	rs73541251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16p12.3		rs73541251-G	0.076258927	1E-13		0.13763689	[0.1-0.17] unit increase	Illumina [13134967] (imputed)	N
740	chr16	20337185	20337186	rs73541271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16p12.3		rs73541271-T	NR	5E-13		0.121	[0.088-0.154] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
740	chr16	20337883	20337884	rs4632135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16p12.3		rs4632135-C	NR	5E-8		0.0832	[0.053-0.113] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
740	chr16	20342571	20342572	rs12444268	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	16p12.3	intergenic	rs12444268-A	0.30	2E-7		1.1	[1.03-1.17]	Affymetrix, Illumina [841622] (imputed)	N
740	chr16	20343090	20343091	rs4238595	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	16p12.3	UMOD	rs4238595-C	0.687	2E-11		0.912		Illumina [715631] (imputed)	N
740	chr16	20343090	20343091	rs4238595	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	16p12.3	UMOD	rs4238595-C	0.687	2E-11		0.912		Illumina [715631] (imputed)	N
740	chr16	20343090	20343091	rs4238595	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	16p12.3	GP2	rs4238595-C	0.680478	2E-11		0.11213453	[0.079-0.145] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
740	chr16	20348704	20348705	rs188709583	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	16p12.3	UMOD	rs188709583-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
740	chr16	20348704	20348705	rs188709583	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	16p12.3	UMOD	rs188709583-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
740	chr16	20351230	20351231	rs11859916	22087292	Sun L	2011-11-07	PLoS One	Bivariate genome-wide association analyses of femoral neck bone geometry and appendicular lean mass.	Femoral neck bone geometry	1,627 Han Chinese ancestry individuals	2,286 European ancestry individuals	16p12.3	UMOD	rs11859916-?	NR	2E-6	(ALM-W)			Affymetrix [689368]	N
740	chr16	20352583	20352584	rs143583842	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	16p12.3	UMOD	rs143583842-?	1.99521E-4	2E-16				Illumina [~ 244000]	N
740	chr16	20352583	20352584	rs143583842	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	16p12.3	UMOD	rs143583842-?	1.99521E-4	2E-16				Illumina [~ 244000]	N
740	chr16	20352613	20352614	rs201761378	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	16p12.3	UMOD	rs201761378-?	8.69397E-4	2E-16				Illumina [~ 244000]	N
740	chr16	20356012	20356013	rs34857077	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Chronic kidney disease x type 2 diabetes interaction	67,403 European ancestry cases, 129,827 European ancestry controls	NA	16p12.3	UMOD	rs34857077-GA	0.237	6E-19				Affymetrix [at least 723305] (imputed)	N
740	chr16	20358247	20358248	rs9928003	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	THP plasma levels	400 French ancestry individuals	NA	16p12.3		rs9928003-A	NR	2E-23		0.381	[0.31-0.45] ug/mL decrease	Illumina [5201092] (imputed)	N
740	chr16	20361949	20361950	rs36060036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16p12.3		rs36060036-T	NR	4E-8		0.0582	[0.037-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
740	chr16	20361949	20361950	rs36060036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	16p12.3		rs36060036-T	NR	3E-9		0.0658	[0.044-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
740	chr16	20364587	20364588	rs4293393	20686651	Gudbjartsson DF	2010-07-29	PLoS Genet	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	16p12.3	UMOD	rs4293393-T	0.798	4E-10	(CKD)	1.25	[1.17-1.35]	Illumina [~ 2500000] (imputed)	N
740	chr16	20365233	20365234	rs4997081	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16p12.3	UMOD	rs4997081-C	0.1962	4E-10		0.030192	[0.021-0.04] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
740	chr16	20365653	20365654	rs13333226	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	16p12.3	NR	rs13333226-?		2E-9	(EA)	2.68	[1.80-3.55] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
740	chr16	20365653	20365654	rs13333226	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	16p12.3	NR	rs13333226-?		3E-10	(EA)	2.41	[1.66-3.15]	Affymetrix, Illumina [up to 9343778] (imputed)	N
740	chr16	20365653	20365654	rs13333226	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p12.3	UMOD, PDILT	rs13333226-A		2E-9		0.179	unit increase	Affymetrix [at least 2696785] (imputed)	N
740	chr16	20365653	20365654	rs13333226	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	16p12.3	UMOD	rs13333226-A	0.8083	6E-8	(EA)	5.422	z score increase	Illumina [242296]	N
740	chr16	20365653	20365654	rs13333226	21082022	Padmanabhan S	2010-10-28	PLoS Genet	Genome-wide association study of blood pressure extremes identifies variant near UMOD associated with hypertension.	Hypertension	1,621 extreme cases, 1,699 controls	19,845 extreme cases, 16,541 controls	16p12.3	UMOD	rs13333226-A	0.81	4E-11		1.15	[1.10-1.19]	Illumina [521220] (imputed)	N
740	chr16	20366506	20366507	rs13329952	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16p12.3	NR	rs13329952-T	0.81	3E-11		0.0156	[0.011-0.02] unit increase	NR [NR]	N
740	chr16	20366506	20366507	rs13329952	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, Rapid3)	34,874 European, African American, Hispanic or South Asian cases, 107,090 European, African American, Hispanic or South Asian controls	NA	16p12.3	UMOD, PDILT	rs13329952-T	0.79	2E-17		1.101	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
740	chr16	20366506	20366507	rs13329952	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, Rapid3)	31,101 European ancestry cases, 102,485 European ancestry controls	NA	16p12.3	UMOD-PDILT	rs13329952-T	NR	1E-15		1.099	[1.08-1.12]	Affymetrix, Illumina [> 8000000] (imputed)	N
740	chr16	20366506	20366507	rs13329952	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,419 European ancestry cases, 169,087 European ancestry controls	NA	16p12.3	UMOD-PDILT	rs13329952-T	NR	4E-30		1.21	[1.18-1.24]	Affymetrix, Illumina [> 8000000] (imputed)	N
740	chr16	20366506	20366507	rs13329952	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	16p12.3	UMOD	rs13329952-C	0.192068	4E-8		0.055942096	[0.036-0.076] unit decrease	Affymetrix [7288503] (imputed)	N
740	chr16	20366506	20366507	rs13329952	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16p12.3	UMOD, PDILT	rs13329952-T	0.855	4E-20		0.339	[0.13-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
740	chr16	20366506	20366507	rs13329952	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	16p12.3	UMOD	rs13329952-T	0.81	9E-43	(EA)	0.0158	[0.014-0.018] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20366506	20366507	rs13329952	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	16p12.3	UMOD	rs13329952-T	0.81	2E-25		1.24	[1.19-1.29]	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367644	20367645	rs12922822	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,901 European, African American or Hispanic cases, 175,244 European, African American or Hispanic controls	NA	16p12.3	NR	rs12922822-C	0.81	4E-33		1.224	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
740	chr16	20367644	20367645	rs12922822	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	16p12.3	PDILT	rs12922822-T	0.168	2E-82		2.287	[2.05-2.52] unit increase	Affymetrix [NR] (imputed)	N
740	chr16	20367644	20367645	rs12922822	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p12.3	NR	rs12922822-?	NR	2E-8		0.0844739	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
740	chr16	20367689	20367690	rs12917707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p12.3	NR	rs12917707-T	NR	3E-20		0.0288	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	16p12.3	NR	rs12917707-T	NR	4E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs12917707-T	NR	2E-132		0.0762	[0.07-0.082] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p12.3	NR	rs12917707-T	NR	5E-84		0.0606	[0.055-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs12917707-T	NR	6E-130		0.0757	[0.07-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	16p12.3	UMOD	rs12917707-T	NR	5E-36		0.0152	[0.013-0.018] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in diabetics (creatinine)	11,522 European ancestry individuals	4,955 European ancestry individuals	16p12.3	UMOD	rs12917707-T	NR	2E-8		0.0266	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	16p12.3	UMOD, PDILT	rs12917707-T	0.18	8E-13	(eGFRchange noCKD)	0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	16p12.3	UMOD, PDILT	rs12917707-T	0.18	4E-6	(CKDi25)	0.22	[0.12-0.32] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	16p12.3	UMOD, PDILT	rs12917707-T	0.18	2E-17	(eGFRchange overall)	0.14	[NR] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	16p12.3	PDILT, UMOD	rs12917707-T	0.18	9E-8	(CKDi)	0.2	[0.12-0.28] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	24578125	Olden M	2014-02-27	J Am Soc Nephrol	Common variants in UMOD associate with urinary uromodulin levels: a meta-analysis.	Urinary uromodulin levels	10,884 European ancestry individuals	NA	16p12.3	UMOD	rs12917707-T	0.18	8E-73		0.32	[0.28-0.36] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	16p12.3	UMOD, ACSM5, GP2, PDILT	rs12917707-T	0.18	1E-20	(eGFRcrea)			Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	19430482	Kottgen A	2009-05-10	Nat Genet	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	16p12.3	UMOD	rs12917707-T	0.18	5E-16	(eGFRcrea)	0.02	[0.014-0.022] ml/min/1.73m2 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20367689	20367690	rs12917707	19430482	Kottgen A	2009-05-10	Nat Genet	Multiple loci associated with indices of renal function and chronic kidney disease.	Renal function and chronic kidney disease	2,388 European ancestry cases, 17,489 European ancestry controls	1,932 cases, 19,534 controls	16p12.3	UMOD	rs12917707-G	0.82	2E-12	(CKD)	1.25	[1.18-1.33]	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20370815	20370816	rs9652589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p12.3		rs9652589-?	NR	3E-10				NR [~ 8900000] (imputed)	N
740	chr16	20370815	20370816	rs9652589	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.3	NR	rs9652589-C	NR	1E-9		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
740	chr16	20370815	20370816	rs9652589	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p12.3	PDILT, IQCK	rs9652589-C	0.4992	4E-13		0.0128	[0.0093-0.0163] unit increase	Illumina [246328]	N
740	chr16	20371074	20371075	rs9929792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.3	NR	rs9929792-?	NR	7E-17				Affymetrix [~ 8270000] (imputed)	N
740	chr16	20371074	20371075	rs9929792	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.3	NA	rs9929792-A	0.5005	2E-19		0.0152	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
740	chr16	20371074	20371075	rs9929792	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p12.3	NA	rs9929792-A	0.5005	2E-19		0.0152	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
740	chr16	20371587	20371588	rs4494548	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16p12.3	UMOD, PDILT	rs4494548-A	0.074	3E-9		0.362	[0.025-0.699] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
740	chr16	20371587	20371588	rs4494548	24578125	Olden M	2014-02-27	J Am Soc Nephrol	Common variants in UMOD associate with urinary uromodulin levels: a meta-analysis.	Urinary uromodulin levels	10,884 European ancestry individuals	NA	16p12.3	PDILT	rs4494548-A	0.13	4E-15		0.17	[0.13-0.21] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20372695	20372696	rs73543320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16p12.3		rs73543320-A	NR	5E-8		0.0184	[0.012-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
740	chr16	20375570	20375571	rs117774819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs117774819-G	NR	3E-9		0.0689	[0.046-0.092] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20375570	20375571	rs117774819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p12.3	NR	rs117774819-G	NR	3E-11		0.0778	[0.055-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20380003	20380004	rs4780885	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p12.3		rs4780885-G	0.5	6E-11				NR [NR] (imputed)	N
740	chr16	20380003	20380004	rs4780885	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p12.3		rs4780885-G	0.5	8E-12		0.01	% increase	NR [NR] (imputed)	N
740	chr16	20380003	20380004	rs4780885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.3		rs4780885-?	NR	1E-16				NR [~ 8900000] (imputed)	N
740	chr16	20384728	20384729	rs76621572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs76621572-T	NR	9E-26		0.0695	[0.057-0.082] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20384728	20384729	rs76621572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p12.3	NR	rs76621572-T	NR	2E-16		0.0548	[0.042-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20384728	20384729	rs76621572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs76621572-T	NR	2E-24		0.0677	[0.055-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20388928	20388929	rs35208507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	16p12.3		rs35208507-G	0.221067	5E-58		0.0552085	[0.048-0.062] unit decrease	Illumina [13478778] (imputed)	N
740	chr16	20392331	20392332	rs77924615	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	16p12.3		rs77924615-G	0.804353	5E-32		0.0529438	[0.044-0.062] unit increase	NR [11722792] (imputed)	N
740	chr16	20392331	20392332	rs77924615	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NBL1	5,362 Icelandic ancestry individuals	NA	16p12.3		rs77924615-A	0.1942	2E-12		0.152778	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
740	chr16	20392331	20392332	rs77924615	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,367 Icelandic ancestry individuals	NA	16p12.3		rs77924615-A	0.1942	3E-16		0.188476	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
740	chr16	20392331	20392332	rs77924615	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP6	5,367 Icelandic ancestry individuals	NA	16p12.3		rs77924615-A	0.1942	6E-12		0.137867	[0.099-0.177] unit decrease	Illumina [7506463] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	16p12.3		rs77924615-A	NR	3E-22		0.136	[0.11-0.16] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	4E-204		0.0611	[0.057-0.065] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	16p12.3		rs77924615-A	NR	3E-8		0.0399	[0.026-0.054] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16p12.3		rs77924615-A	NR	1E-15		0.0492	[0.037-0.061] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	2E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	3E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	1E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic renal failure	8,287 European ancestry cases, 474,571 European ancestry controls, 2,117 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	16p12.3		rs77924615-A	NR	4E-19		0.1575	[0.12-0.19] unit decrease	Affymetrix, Illumina [25844740] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16p12.3		rs77924615-A	NR	5E-55		0.0371	[0.032-0.042] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
740	chr16	20392331	20392332	rs77924615	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	16p12.3	PDILT	rs77924615-?	NR	3E-11		0.0534	NR L increase	Affymetrix [9390170] (imputed)	N
740	chr16	20392331	20392332	rs77924615	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	16p12.3		rs77924615-?	NR	1E-6		0.5179182	[0.31-0.73] ml/min/1.73 m2 increase	NR [43622178]	N
740	chr16	20392331	20392332	rs77924615	33137338	Gorski M	2020-10-30	Kidney Int	Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline.	Estimated glomerular filtration rate (creatinine, CKDi25)	19,901 European, African American or Hispanic cases, 175,244 European, African American or Hispanic controls	NA	16p12.3	UMOD, PDILT	rs77924615-G	0.79	1E-28		1.26	NR	Affymetrix, Illumina [> 8000000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	16p12.3		rs77924615-A	0.2	2E-35		0.1388	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16p12.3		rs77924615-?	NR	4E-9		0.0152475	[0.01-0.02] unit decrease	NR [6912294] (imputed)	N
740	chr16	20392331	20392332	rs77924615	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16p12.3		rs77924615-G	0.806515	1E-9		0.015	[0.0091-0.0209] unit decrease	NR [7250403] (imputed)	N
740	chr16	20392331	20392332	rs77924615	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	16p12.3	NR	rs77924615-A	0.197773	1E-10		0.015792	[0.011-0.021] unit decrease	Affymetrix [16668957] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	16p12.3	UMOD	rs77924615-A	0.2	1E-13		1.14	[1.10-1.19]	Affymetrix, Illumina [~ 5000000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	16p12.3	UMOD	rs77924615-A	0.2	2E-8		1.13	[1.09-1.18]	Affymetrix [~ 8400000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16p12.3	PDILT	rs77924615-A	0.203	1E-11		0.0273	[0.019-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16p12.3	NR	rs77924615-A	0.2047	2E-6	(women)	0.0276	[0.016-0.039] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	16p12.3	PDILT	rs77924615-A	0.192	2E-74		1.291	[1.15-1.43] unit increase	Affymetrix [NR] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16p12.3	PDILT	rs77924615-A	0.203	4E-139		0.0098	[0.009-0.0106] unit increase	Affymetrix [NR] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16p12.3	PDILT	rs77924615-A	0.2017	1E-99	(EA)	0.0096	[0.0086-0.0106] unit increase	Affymetrix [NR] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16p12.3	PDILT	rs77924615-A	0.2033	3E-259		0.0098	[0.009-0.0106] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16p12.3	PDILT	rs77924615-A	0.2017	1E-213		0.0096	[0.0086-0.0106] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	16p12.3	PDILT	rs77924615-A	0.2104	1E-37		0.0107	[0.0091-0.0123] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	16p12.3	PDILT	rs77924615-G	0.8	7E-86		1.2318305	[1.21-1.26]	Affymetrix, Illumina [9585923] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	16p12.3	PDILT	rs77924615-A	0.2056	5E-42		0.0123	[0.011-0.014] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16p12.3	UMOD	rs77924615-G	0.8064	5E-105		21.763	NR z score decrease	Illumina [26237160] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	16p12.3	RP11-429K17.1, PDILT	rs77924615-A	0.188563	2E-16		0.06473	[0.051-0.079] unit decrease	Illumina [24961484] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16p12.3	PDILT	rs77924615-A	0.194072	1E-11		0.06819958	[0.048-0.088] unit decrease	Affymetrix [7288503] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	16p12.3	PDILT	rs77924615-A	0.194395	7E-11		0.06863889	[0.048-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
740	chr16	20392331	20392332	rs77924615	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16p12.3	PDILT	rs77924615-A	0.19261	7E-17		0.064609975	[0.049-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
740	chr16	20392331	20392332	rs77924615	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16p12.3	UMOD, PDILT	rs77924615-?	NR	3E-83				Affymetrix, Illumina [at least 5248638] (imputed)	N
740	chr16	20392331	20392332	rs77924615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p12.3		rs77924615-?	NR	7E-25				NR [~ 8900000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p12.3		rs77924615-?	NR	3E-21				NR [~ 8900000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	16p12.3	PDILT	rs77924615-?	NR	6E-59		0.07328	[0.064-0.082] unit increase novel	Illumina [6108953] (imputed)	N
740	chr16	20392331	20392332	rs77924615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	16p12.3	PDILT	rs77924615-?	NR	2E-53		0.06802	[0.059-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
740	chr16	20392331	20392332	rs77924615	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		16p12.3	UMOD	rs77924615-A	NR	5E-40		0.0176	[0.015-0.02] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
740	chr16	20392331	20392332	rs77924615	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	16p12.3	PDILT, UMOD	rs77924615-G	NR	2E-15		1.185	[0.9-1.47] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	16p12.3	PDILT, UMOD	rs77924615-G	0.8	2E-9	(EA)	1.3	[0.88-1.72] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
740	chr16	20392331	20392332	rs77924615	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	16p12.3	PDILT, UMOD	rs77924615-G	0.78	4E-7	(Japanese)	1.589	[0.97-2.2] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
740	chr16	20392414	20392415	rs62034975	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p12.3	NR	rs62034975-G	0.6999	7E-10		0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
740	chr16	20392414	20392415	rs62034975	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	16p12.3		rs62034975-C	0.218772083	5E-13		1.171996	[1.122662283-1.223497675]	Illumina [8919992] (imputed)	N
740	chr16	20393307	20393308	rs35747824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	16p12.3		rs35747824-T	0.217573265	3E-12		0.12156264	[0.087-0.156] unit increase	Illumina [13429980] (imputed)	N
740	chr16	20393307	20393308	rs35747824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	16p12.3		rs35747824-T	0.219771	5E-31		0.0472425	[0.039-0.055] unit decrease	Illumina [13478792] (imputed)	N
740	chr16	20393307	20393308	rs35747824	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	16p12.3	PDILT	rs35747824-T	0.222	9E-11		1.1111112	[NR]	Illumina [6603247] (imputed)	N
740	chr16	20400838	20400839	rs11864909	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p12.3	PDILT	rs11864909-C	0.714076	5E-9		0.00885642	[0.0059-0.0118] unit decrease	Affymetrix [12370749]	N
740	chr16	20400838	20400839	rs11864909	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	16p12.3	UMOD	rs11864909-?-T	0.28	4E-12		2.34	[1.68-3.00] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
740	chr16	20400838	20400839	rs11864909	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	16p12.3	UMOD	rs11864909-T	0.28	2E-12		2.11	[1.52-2.70]	Affymetrix, Illumina [up to 9343778] (imputed)	N
740	chr16	20400838	20400839	rs11864909	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	16p12.3	UMOD	rs11864909-C	0.81	1E-10		0.0052	[0.0036-0.0068] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
740	chr16	20400838	20400839	rs11864909	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	16p12.3	UMOD	rs11864909-C	0.81	4E-10		0.0057	[0.0039-0.0075] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
740	chr16	20403826	20403827	rs11640962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p12.3	NR	rs11640962-G	NR	6E-11		0.0244	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20403826	20403827	rs11640962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs11640962-G	NR	1E-26		0.0398	[0.033-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20403826	20403827	rs11640962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p12.3	NR	rs11640962-G	NR	8E-23		0.0366	[0.029-0.044] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20403826	20403827	rs11640962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs11640962-G	NR	4E-26		0.0393	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20407195	20407196	rs12921916	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	16p12.3	PDILT	rs12921916-?	NR	7E-29		0.04923	[0.041-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
740	chr16	20408376	20408377	rs12446492	24578125	Olden M	2014-02-27	J Am Soc Nephrol	Common variants in UMOD associate with urinary uromodulin levels: a meta-analysis.	Urinary uromodulin levels	10,884 European ancestry individuals	NA	16p12.3	PDILT	rs12446492-A	0.45	6E-27		0.15	[0.13-0.17] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
740	chr16	20411762	20411763	rs7192797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p12.3	NR	rs7192797-A	NR	2E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20411762	20411763	rs7192797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs7192797-A	NR	1E-58		0.0425	[0.037-0.048] unit increase	Affymetrix [9000000] (imputed)	N
740	chr16	20411762	20411763	rs7192797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16p12.3	NR	rs7192797-A	NR	6E-42		0.0358	[0.031-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20411762	20411763	rs7192797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs7192797-A	NR	1E-58		0.0426	[0.038-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr16	20446838	20446839	rs7498385	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs7498385-T	0.399	2E-16	(ACSM5)	0.02304	NR unit decrease	Illumina [1671387] (imputed)	N
741	chr16	20449615	20449616	rs11647589	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p12.3	ACSM5	rs11647589-A	0.72	3E-11	(3-phenylpropionate (hydrocinnamate))	0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
741	chr16	20453164	20453165	rs7202392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs7202392-G	0.3084	7E-15	(ACSM5)	0.02309	NR unit decrease	Illumina [1671387] (imputed)	N
741	chr16	20475277	20475278	rs7185111	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	ACSM2A	rs7185111-C	0.689098	4E-24	(indoleacetylglutamine)	0.222	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
741	chr16	20475277	20475278	rs7185111	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16p12.3	ACSM2A	rs7185111-C	0.689098	4E-24	(indoleacetylglutamine)	0.222	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
741	chr16	20477003	20477004	rs59261767	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	ACSM2A	rs59261767-T	0.0256671	5E-13	(indolepropionate)	0.515	[0.38-0.65] unit increase	Illumina [13039987] (imputed)	N
741	chr16	20477473	20477474	rs6497490	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p12.3	ACSM2A	rs6497490-G	0.13	1E-30	(indoleacetylglutamine)	0.64	[0.53-0.75] unit decrease	Illumina [7750367] (imputed)	N
741	chr16	20477473	20477474	rs6497490	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p12.3	ACSM2A	rs6497490-T	0.88	5E-27	(X-11478)	0.082	[0.066-0.098] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
741	chr16	20491057	20491058	rs1394678	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p12.3	ACSM2A	rs1394678-T	0.28	2E-20	(indolepropionate)	0.035	[0.027-0.043] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
741	chr16	20496272	20496273	rs757002	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16p12.3	UMOD, PDILT	rs757002-A	0.836	7E-6		0.208	[-0.06836-0.48436] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
741	chr16	20499953	20499954	rs117729213	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	AX747287	rs117729213-C	0.966038	9E-17	(3-hydroxyhexanoate)	0.555	[0.42-0.69] unit decrease	Illumina [13039987] (imputed)	N
741	chr16	20512885	20512886	rs146837086	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.3	NR	rs146837086-G	0.01045	4E-10	(HMOX1)	0.02988	NR unit increase	Illumina [1671387] (imputed)	N
741	chr16	20549776	20549777	rs11648341	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	16p12.3	ACSM2B	rs11648341-?	NR	5E-10		0.008374	[0.0036-0.0132] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
741	chr16	20549776	20549777	rs11648341	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	16p12.3	ACSM2B	rs11648341-?	NR	1E-6	(AA)	0.008745	[-0.00509-0.02258] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
741	chr16	20553482	20553483	rs9938198	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	16p12.3	ACSM2B	rs9938198-C	0.943	2E-6	(Case/control)	0.7999	[0.47-1.13] unit increase	Affymetrix, Illumina [NR] (imputed)	N
741	chr16	20555258	20555259	rs7499271	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	ACSM2B	rs7499271-T	0.913627	9E-20	(phenylacetate)	0.375	[0.29-0.46] unit decrease	Illumina [13039987] (imputed)	N
741	chr16	20555258	20555259	rs7499271	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	ACSM2B	rs7499271-T	0.913627	6E-44	(picolinate)	0.569	[0.49-0.65] unit decrease	Illumina [13039987] (imputed)	N
741	chr16	20555258	20555259	rs7499271	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	16p12.3	ACSM2B	rs7499271-A	0.25	6E-11	(Phenylacetate)	0.25	[NR] unit increase	Affymetrix [2341704] (imputed)	N
741	chr16	20558440	20558441	rs9926388	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	16p12.3	ACSM2B	rs9926388-A	0.252	2E-8		1.24	[1.15-1.33]	Illumina [7206774] (imputed)	N
741	chr16	20563543	20563544	rs35623745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs35623745-G	NR	4E-9		0.0612	[0.041-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
741	chr16	20567888	20567889	rs35243287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	16p12.3		rs35243287-G	0.717998	4E-8		0.0223507	[0.014-0.03] unit decrease	Illumina [13475706] (imputed)	N
742	chr16	20587567	20587568	rs142593364	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p12.3	ACSM2B	rs142593364-T	0.0999619	4E-15	(beta-hydroxyisovalerate)	0.299	[0.22-0.37] unit increase	Illumina [13039987] (imputed)	N
742	chr16	20587567	20587568	rs142593364	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16p12.3	ACSM2B	rs142593364-T	0.0999619	4E-15	(beta-hydroxyisovalerate)	0.299	[0.22-0.37] unit increase	Illumina [13039987] (imputed)	N
742	chr16	20617840	20617841	rs11645002	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	16p12.3	ACSM3	rs11645002-A	0.08	3E-17	(1.257 ppm/1.067 ppm)	0.1312	[NR] unit increase	Affymetrix [620456]	N
742	chr16	20650044	20650045	rs1551568	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p12.3	NR	rs1551568-?	NR	2E-39				Affymetrix [NR]	N
742	chr16	20674491	20674492	rs151222	18347602	Sullivan PF	2008-03-18	Mol Psychiatry	Genomewide association for schizophrenia in the CATIE study: results of stage 1.	Schizophrenia	417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry controls	NA	16p12.3	ACSM1, BUCS1	rs151222-?	0.08	6E-6		2.1	[NR]	Affymetrix [492900]	N
742	chr16	20677169	20677170	rs163269	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	16p12.3	ACSM1	rs163269-?		3E-6				Illumina [2668805]	N
742	chr16	20680205	20680206	rs433598	20185149	Athanasiu L	2010-02-23	J Psychiatr Res	Gene variants associated with schizophrenia in a Norwegian genome-wide study are replicated in a large European cohort.	Schizophrenia	201 European ancestry cases, 305 European ancestry controls	2,663 European ancestry cases, 13,780 European ancestry controls	16p12.3	ACSM1	rs433598-T	NR	3E-6		1.13	[NR]	Affymetrix [572888]	N
742	chr16	20688939	20688940	rs234280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p12.3		rs234280-?	NR	6E-9				NR [~ 8900000] (imputed)	N
742	chr16	20700015	20700016	rs11643793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p12.3		rs11643793-A	NR	5E-14		0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
743	chr16	20740256	20740257	rs35518073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.3		rs35518073-?	NR	1E-12				NR [~ 8900000] (imputed)	N
743	chr16	20760020	20760021	rs55792109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	16p12.3	NR	rs55792109-T	NR	8E-10		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
743	chr16	20760020	20760021	rs55792109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs55792109-T	NR	7E-10		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr16	20760020	20760021	rs55792109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16p12.3	NR	rs55792109-T	NR	7E-10		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
743	chr16	20764905	20764906	rs234284	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16p12.3	NR	rs234284-?	NR	2E-6	(AA)	17.97	[16.38-19.56]	Illumina [905956]	N
743	chr16	20801953	20801954	rs201453644	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	16p12.3	ACSM3 and ERI2	rs201453644-A	0.348	9E-11		0.03564		Illumina [243345]	N
744	chr16	20915246	20915247	rs2106450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p12.3		rs2106450-C	NR	4E-13		0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
744	chr16	20915246	20915247	rs2106450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p12.3	LYRM1	rs2106450-C	0.742909	2E-14		0.01929402	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
744	chr16	20915246	20915247	rs2106450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.3	NR	rs2106450-C	0.681296	4E-15				Affymetrix, Illumina [19872809] (imputed)	N
744	chr16	20915246	20915247	rs2106450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p12.3	NR	rs2106450-C	0.742607	4E-15		0.017825	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
744	chr16	20915246	20915247	rs2106450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p12.3		rs2106450-?	NR	5E-11				NR [~ 8900000] (imputed)	N
744	chr16	20921117	20921118	rs571544532	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	16p12.3	LYRM1	rs571544532-G		1E-7		0.636	[NR] unit increase	Illumina [24111857] (imputed)	N
744	chr16	20947487	20947488	rs28654350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p12.3	DNAH3	rs28654350-T	0.722974	6E-12		0.017227761	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
745	chr16	21021656	21021657	rs3103810	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16p12.3	NR	rs3103810-A	0.43	5E-9		0.0107	[0.0071-0.0143] unit increase	NR [NR]	N
745	chr16	21026256	21026260	rs145735044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16p12.3		rs145735044-A	NR	4E-14		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
745	chr16	21088030	21088031	rs7186298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p12.3		rs7186298-?	NR	3E-13				NR [~ 8900000] (imputed)	N
745	chr16	21089904	21089905	rs66487676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p12.3	DNAH3	rs66487676-T	0.43175	3E-9		0.013508073	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
745	chr16	21091290	21091291	rs9935770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16p12.3		rs9935770-T	NR	4E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
745	chr16	21091290	21091291	rs9935770	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16p12.3	DNAH3	rs9935770-C		6E-6		0.246	unit increase	Affymetrix [at least 2696785] (imputed)	N
745	chr16	21091290	21091291	rs9935770	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p12.3	DNAH3	rs9935770-C		5E-9		0.223	unit increase	Affymetrix [at least 2696785] (imputed)	N
745	chr16	21091290	21091291	rs9935770	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p12.3	DNAH3	rs9935770-C		2E-6		0.111	unit increase	Affymetrix [at least 2696785] (imputed)	N
745	chr16	21096979	21096980	rs72780857	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	16p12.3	DNAH3	rs72780857-?	NR	4E-6				Illumina [1365181]	N
746	chr16	21113271	21113272	rs16970881	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-10)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	16p12.3	DNAH3	rs16970881-A		1E-7	(EA)			Illumina [NR]	N
747	chr16	21252259	21252260	rs144039930	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	16p12.2	ANKS4B, ZP2, CRYM	rs144039930-C	0.95	4E-7	(Hispanic)	6.666666	[3.23-14.29]	Affymetrix [at least 730985] (imputed)	N
749	chr16	21521666	21521667	rs4430725	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p12.2	NR	rs4430725-?	NR	6E-6		0.09758395	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
749	chr16	21539263	21539264	rs574661	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p12.2	NR	rs574661-?	NR	1E-19				Affymetrix [NR]	N
749	chr16	21580112	21580113	rs189407799	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p12.2	NR	rs189407799-T	NR	4E-6	(male)	0.5665	[0.33-0.81] unit increase	Illumina [11133794] (imputed)	N
749	chr16	21609977	21609978	rs11646401	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	16p12.2	NR	rs11646401-G	0.442	4E-8		1.029	[1.02-1.04]	NR [5276842] (imputed)	N
749	chr16	21610803	21610804	rs1478461	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	16p12.2	NR	rs1478461-T	0.6618	1E-7		0.0066	[0.0042-0.009] unit increase	NR [7666894] (imputed)	N
749	chr16	21613267	21613268	rs112260868	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	16p12.2	METTL9	rs112260868-A	0.012	4E-10	(YKL-40)	53.408	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
749	chr16	21614008	21614009	rs2369818	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	16p12.2		rs2369818-?	NR	7E-14		0.0218	unit increase	NR [NR]	N
749	chr16	21614008	21614009	rs2369818	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	16p12.2	NR	rs2369818-T	0.4386	3E-8		0.023054866	[0.015-0.031] unit increase	NR [NR]	N
749	chr16	21621966	21621967	rs71379627	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	16p12.2	METTL9	rs71379627-T	0.9761	6E-6	(female)	0.2087	[0.12-0.3] unit decrease	NR [NR] (imputed)	N
749	chr16	21621966	21621967	rs71379627	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls	NA	16p12.2	NR	rs71379627-T	0.9761	6E-6	(female)	0.2087	[0.12-0.3] unit decrease	NR [NR] (imputed)	N
749	chr16	21624932	21624933	rs226007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16p12.2		rs226007-?	NR	2E-14				NR [~ 8900000] (imputed)	N
750	chr16	21639709	21639710	rs12923444	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	16p12.2	NR	rs12923444-C	0.4375	2E-24		1.0235415	[1.02-1.03]	NR [8098588] (imputed)	N
750	chr16	21665896	21665897	rs7204169	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p12.2	NR	rs7204169-C	0.337167	1E-24		0.0335742	[0.027-0.04] unit increase	NR [19129689] (imputed)	N
750	chr16	21689878	21689879	rs78970023	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	16p12.2	OTOA, METTL9, IGSF6	rs78970023-A	0.015	5E-7		0.27	[0.17-0.37] unit decrease	Illumina [10000000] (imputed)	N
752	chr16	21995736	21995737	rs140219446	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	16p12.2	PDZD9	rs140219446-?	0.012	9E-6				Illumina [308166]	N
752	chr16	22002368	22002370	rs77085399	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16p12.2	NR	rs77085399-?	NR	1E-6		0.09910741	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
753	chr16	22064394	22064395	rs1962636	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p12.2	NR	rs1962636-C	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
754	chr16	22202001	22202002	rs145049847	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16p12.2	Intergenic	rs145049847-C	NR	8E-9	(between families)	5.771	unit decrease	Affymetrix [up to 15107142] (imputed)	N
754	chr16	22226992	22226993	rs4783443	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p12.2		rs4783443-?	NR	1E-13		0.0275361	[0.02-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
754	chr16	22257231	22257232	rs56940811	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p12.2	EEF2K	rs56940811-C	0.932041	3E-12		0.0257489	[0.019-0.033] unit decrease	NR [13737936] (imputed)	N
754	chr16	22257231	22257232	rs56940811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p12.2		rs56940811-?	NR	2E-12				NR [~ 8900000] (imputed)	N
755	chr16	22304252	22304253	rs76568292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.2		rs76568292-?	NR	1E-9				NR [~ 8900000] (imputed)	N
755	chr16	22308727	22308728	rs2305969	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		POLR3E	rs2305969-?	NR	2E-10	(male)	2.1686	[NR] unit decrease	Affymetrix [NR] (imputed)	N
755	chr16	22315751	22315752	rs11860299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p12.2		rs11860299-T	NR	2E-10		0.0217	[0.015-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
755	chr16	22315924	22315925	rs8062706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p12.2		rs8062706-C	NR	1E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
755	chr16	22334562	22334563	rs3803647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16p12.2		rs3803647-T	0.159707	1E-8		0.021145	[0.014-0.028] unit decrease	Illumina [13479924] (imputed)	N
755	chr16	22334562	22334563	rs3803647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16p12.2		rs3803647-T	0.159838	3E-11		0.0182483	[0.013-0.024] unit decrease	Illumina [13479295] (imputed)	N
755	chr16	22334562	22334563	rs3803647	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16p12.2	POLR3E	rs3803647-?	NR	2E-10		0.024738647	[0.017-0.032] unit decrease	Illumina [27896057] (imputed)	N
755	chr16	22407464	22407465	rs571737560	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDR2	rs571737560-?	NR	4E-9	(male)	4.69457	[NR] unit decrease	Affymetrix [NR] (imputed)	N
758	chr16	22730982	22730983	rs12920706	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16p12.2	LOC653786, HS3ST2	rs12920706-?		9E-6	(EA)	0.119369194	[0.067-0.172] unit increase	Illumina [13620258] (imputed)	N
758	chr16	22730982	22730983	rs12920706	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16p12.2	LOC653786, HS3ST2	rs12920706-?		9E-6	(African American)	0.119369194	[0.067-0.172] unit increase	Illumina [13620258] (imputed)	N
759	chr16	22807420	22807422	rs35557655	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	16p12.2	NR	rs35557655-?	NR	8E-7		1.6119925	[1.33-1.95]	Affymetrix, Illumina [~ 10400000] (imputed)	N
759	chr16	22889185	22889186	rs2519974	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	16p12.2	HS3ST2	rs2519974-T	0.381	4E-6	(Dominant model)	1.647	[1.264-2.146]	Illumina [733202]	N
759	chr16	22927886	22927887	rs208626	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	16p12.2	HS3ST2	rs208626-?	NR	1E-6		1.1735656	[1.1-1.25]	Illumina [5842835] (imputed)	N
760	chr16	22944592	22944593	rs208623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	16p12.2	NR	rs208623-C	NR	5E-6		0.1409	[0.08-0.201] SD units increase	NR [10700000] (imputed)	N
760	chr16	22950612	22950613	rs138450362	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p12.2	NR	rs138450362-?	NR	5E-8	(Japanese)	1.0668	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
760	chr16	22980464	22980465	rs1110458	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	16p12.2	AC127459.2	rs1110458-C	0.239	8E-6		0.055	[0.031-0.079] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
760	chr16	23031259	23031260	rs8044188	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	16p12.2	USP31	rs8044188-G	0.79	5E-6		1.38		Illumina [4903804] (imputed)	N
760	chr16	23058449	23058450	rs6497642	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	16p12.2	NR	rs6497642-A	0.679059	4E-6		1.1454753	[1.09-1.21]	Affymetrix [7791636] (imputed)	N
760	chr16	23061940	23061941	rs72772480	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p12.2	NR	rs72772480-?	NR	2E-7	(Japanese)	0.6071	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
760	chr16	23067259	23067260	rs8049603	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	16p12.2	NR	rs8049603-T	0.20	1E-6		1.19	[NR]	Illumina [302098]	N
761	chr16	23124192	23124193	rs11641239	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16p12.2	USP31	rs11641239-T	0.2854	5E-9		1.0231643		Affymetrix [11880941] (imputed)	N
761	chr16	23152702	23152702	rs113196631	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p12.2		rs113196631-?	NR	2E-10		0.0163516	[0.011-0.021] unit increase	Affymetrix [20259828] (imputed)	N
761	chr16	23152702	23152702	rs113196631	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p12.2	USP31	rs113196631-A	0.705565	4E-10		0.0268794	[0.019-0.035] unit increase	NR [17166351] (imputed)	N
761	chr16	23152702	23152702	rs113196631	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16p12.2	USP31	rs113196631-A	0.704911	1E-8	(women)	0.0315042	[0.021-0.042] unit increase	NR [17166351] (imputed)	N
761	chr16	23188946	23188947	rs4967985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p12.2		rs4967985-?	NR	8E-18				NR [~ 8900000] (imputed)	N
761	chr16	23195645	23195646	rs4073930	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	16p12.2	SCNN1G	rs4073930-C	NR	1E-7		12.72	NR unit decrease	Illumina [up to 299604]	N
762	chr16	23200847	23200848	rs5735	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p12.2	SCNN1G	rs5735-T	0.69358	1E-19		0.0182241	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
762	chr16	23200847	23200848	rs5735	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p12.2		rs5735-?	NR	5E-15		0.0181528	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
762	chr16	23287840	23287841	rs56050471	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	16p12.2	NR	rs56050471-C	NR	7E-6		0.3097	[0.17-0.44] SD units decrease	NR [10700000] (imputed)	N
763	chr16	23366421	23366422	rs152745	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls, 114 European ancestry case-parent trios, 30 Hispanic case-parent trios, 39 East Asian case-parent trios, 1 South East Asian ancestry case-parent trio, 5 Sub-Saharan African case-parent trios	246 European ancestry cases, 1,685 European ancestry controls	16p12.2		rs152745-A	NR	3E-6	(EA)	2.17	[1.57-3.01]	Illumina [34985077] (imputed)	N
763	chr16	23381913	23381914	rs889299	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	16p12.2	SCNN1B	rs889299-G	0.76	2E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 5000000] (imputed)	N
763	chr16	23381913	23381914	rs889299	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	16p12.2	SCNN1B	rs889299-G	0.76	8E-6		1.1	[1.05-1.14]	Affymetrix [~ 8400000] (imputed)	N
763	chr16	23394398	23394399	rs250567	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		16p12.2	intergenic	rs250567-?	NR	1E-7	(AA)	0.072	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
763	chr16	23401075	23401076	rs250585	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Egg allergy	217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	16p12.2	COG7	rs250585-?	NR	4E-6				Illumina [6459842] (imputed)	N
765	chr16	23632682	23632683	rs180177132	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16p12.2		rs180177132-?	NR	8E-6		1.98547	[1.68-2.29]	NR [688737]	N
765	chr16	23632682	23632683	rs180177132	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	16p12.2		rs180177132-?	NR	1E-12		4.54031	[4.12-4.96]	NR [682398]	N
765	chr16	23634025	23634026	rs420259	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	16p12.2	NR	rs420259-?	NR	9E-9	(recessive)			Affymetrix [NR]	N
765	chr16	23634025	23634026	rs420259	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	16p12.2	DCTN5, PALB2, NDUFAB1	rs420259-A	0.72	6E-8		2.08	[1.60-2.71]	Affymetrix [469557]	N
765	chr16	23640466	23640467	rs249954	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	16p12.2	NR	rs249954-A		2E-6	(Modelling analysis)	1.07	[1.04-1.10]	NR [1252901] (imputed)	N
765	chr16	23647724	23647725	rs515726080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	16p12.2		rs515726080-G	NR	6E-18		3.6691	[2.84-4.5] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
765	chr16	23700675	23700676	rs45569335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p12.2	PLK1	rs45569335-A	0.012232	1E-10		0.06769346	[0.047-0.088] unit increase	Affymetrix [93095623] (imputed)	N
765	chr16	23700675	23700676	rs45569335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p12.2	PLK1	rs45569335-A	0.01226	3E-9		0.0568176	[0.038-0.076] unit increase	Affymetrix [93095623] (imputed)	N
765	chr16	23700675	23700676	rs45569335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.2	NR	rs45569335-A	0.0114174	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
765	chr16	23700675	23700676	rs45569335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p12.2	NR	rs45569335-A	0.011814	5E-11		0.057427	[0.04-0.075] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
766	chr16	23749776	23749777	rs11642421	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16p12.2	NR	rs11642421-?	NR	1E-7	(Japanese)	0.5307	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
766	chr16	23762261	23762262	rs35679184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p12.2		rs35679184-C	NR	3E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
766	chr16	23765773	23765774	rs4968031	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	16p12.2	AC130454.2, AC130454.1	rs4968031-?	NR	1E-6				Illumina [874956]	N
766	chr16	23768709	23768710	rs109592	33542050	Namkoong H	2021-02-04	Eur Respir J	Genome-wide association study in patients with pulmonary <i>Mycobacterium avium</i> complex disease.	Pulmonary mycobacterium avium complex disease	475 Japanese ancestry cases, 417 Japanese ancestry controls	1,313 East Asian ancestry cases, 2,440 East Asian ancestry controls, 276 European ancestry cases, 206 European ancestry controls	16p12.2		rs109592-?	NR	2E-13	(East Asian)	0.54	[0.45-0.63]	Affymetrix [5876247] (imputed)	N
766	chr16	23794734	23794735	rs55869023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p12.2		rs55869023-T	0.204533	7E-9		0.015881905	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
766	chr16	23797511	23797512	rs66815895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p12.2		rs66815895-?	NR	1E-9				NR [~ 8900000] (imputed)	N
766	chr16	23804955	23804956	rs194809	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.2	NR	rs194809-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
766	chr16	23804955	23804956	rs194809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.2		rs194809-?	NR	4E-8				NR [~ 8900000] (imputed)	N
766	chr16	23804955	23804956	rs194809	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.2	NA	rs194809-A	0.1871	5E-9		0.0126	[0.0083-0.0169] unit increase	NR [~ 27400000] (imputed)	N
766	chr16	23825723	23825724	rs77953657	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	16p12.2	NR	rs77953657-C	0.76	1E-5				Illumina [4877242] (imputed)	N
766	chr16	23837047	23837048	rs9939355	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	16p12.2	PRKCB, CHP2	rs9939355-C		2E-9		0.0051	[0.0033-0.0069] unit increase	Affymetrix [13304133] (imputed)	N
767	chr16	23861325	23861326	rs12919956	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p12.2	PRKCB	rs12919956-T	0.80578125	2E-6	(PRKCB, 5475_10_3)	0.14460348	[0.085-0.205] unit increase	Illumina [> 1000000] (imputed)	N
767	chr16	23864589	23864590	rs7404095	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16p12.2	PRKCB	rs7404095-?		2E-7				Illumina [9578670] (imputed)	N
767	chr16	23864589	23864590	rs7404095	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16p12.2	PRKCB	rs7404095-?		2E-7				Illumina [9725440] (imputed)	N
767	chr16	23864589	23864590	rs7404095	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p12.2	PRKCB	rs7404095-?	NR	3E-9	(subset analysis)			Illumina [130052]	N
767	chr16	23864589	23864590	rs7404095	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p12.2	NR	rs7404095-G	0.58	2E-8	(EA)	1.0744067		Affymetrix, Illumina [~ 9000000] (imputed)	N
767	chr16	23864589	23864590	rs7404095	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p12.2	NR	rs7404095-G	0.58	3E-8	(EA)	1.0573224		Affymetrix, Illumina [~ 9000000] (imputed)	N
767	chr16	23864589	23864590	rs7404095	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p12.2	PRKCB	rs7404095-C	0.572	1E-9		1.06	[1.03-1.091]	Affymetrix, Illumina [1230000] (imputed)	N
767	chr16	23865985	23865986	rs886114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p12.2		rs886114-T	NR	1E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
767	chr16	23865985	23865986	rs886114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p12.2	PRKCB	rs886114-T	0.641851	3E-9		0.013688397	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
767	chr16	23865985	23865986	rs886114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.2	NR	rs886114-T	0.641172	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
767	chr16	23871206	23871206	rs149041927	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	16p12.2		rs149041927-A	NR	2E-8		0.91	[0.88-0.94]	NR [13810676] (imputed)	N
767	chr16	23871456	23871457	rs79401250	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16p12.2	PRKCB	rs79401250-T	0.819	1E-12		1.172	[1.13-1.22]	Illumina [11270530] (imputed)	N
767	chr16	23872131	23872132	rs62030649	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	16p12.2	NR	rs62030649-G	NR	7E-8	(GEE model)	1.0277	[0.65-1.4] unit decrease	NR [NR] (imputed)	N
767	chr16	23888839	23888840	rs7404928	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	16p12.2	PRKCB	rs7404928-T	0.632	4E-9		1.26	[1.16-1.35]	Affymetrix [425290]	N
767	chr16	23888839	23888840	rs7404928	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	16p12.2	PRKCB1	rs7404928-T	0.62	4E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [1948139]	N
767	chr16	23909537	23909538	rs11643715	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	16p12.2	NR	rs11643715-G	NR	6E-6		0.66	unit increase	Affymetrix [14661600] (imputed)	N
767	chr16	23909537	23909538	rs11643715	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	16p12.2	PRKCB	rs11643715-C	0.706799	6E-6		0.022899233	[0.013-0.033] SD units decrease	NR [9926106] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	7E-6	(TAG 56:5)	0.5408833	[0.31-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	6E-6	(TAG 54:8)	0.5463867	[0.31-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	4E-6	(TAG 54:5)	0.5529441	[0.32-0.79] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	2E-6	(TAG 56:9)	0.576278	[0.34-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	2E-6	(TAG 54:7)	0.5753001	[0.34-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24038774	24038775	rs7197833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.2	CACNG3	rs7197833-?	NR	2E-6	(TAG 54:6)	0.56347555	[0.33-0.8] unit decrease	Affymetrix [at least 2500000] (imputed)	N
768	chr16	24044920	24044921	rs145719494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p12.2	NR	rs145719494-G	0.058785	4E-14		0.030887	[0.023-0.039] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
768	chr16	24046654	24046655	rs11643225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p12.2	PRKCB	rs11643225-T	0.059438	7E-12		0.032415144	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr16	24085200	24085201	rs9938585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs9938585-T	0.961	3E-6	(AA)	0.079	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24088175	24088176	rs9928486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs9928486-C	0.96	1E-6	(AA)	0.082	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24089770	24089771	rs12921419	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs12921419-G	0.958	1E-6	(AA)	0.079	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24091837	24091838	rs6497718	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs6497718-A	0.929	3E-6	(AA)	0.06	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24093336	24093337	rs35526040	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs35526040-T	0.959	9E-7	(AA)	0.084	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24094702	24094703	rs7205511	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs7205511-T	0.931	2E-6	(AA)	0.064	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24094976	24094977	rs12929627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs12929627-T	0.96	7E-7	(AA)	0.088	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24095373	24095374	rs34289708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.2	PRKCB	rs34289708-C	0.96	6E-7	(AA)	0.088	NR unit increase	Illumina [NR] (imputed)	N
768	chr16	24111106	24111107	rs413117	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	16p12.2	NR	rs413117-?	NR	3E-6		1.2232416		Affymetrix [8183964] (imputed)	N
769	chr16	24136200	24136201	rs198188	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	16p12.2	PRKCB	rs198188-A	0.36	4E-6	(male)	0.0488	[0.028-0.069] unit increase	Illumina [6380737] (imputed)	N
769	chr16	24162381	24162382	rs395897	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p12.2	Intergenic	rs395897-C	0.3302	6E-9	(MTAG)	0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
769	chr16	24202457	24202458	rs3729904	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	16p12.2	PRKCB	rs3729904-T	0.15	9E-6	(left leg)	0.3	[0.16-0.44] g decrease	Illumina [> 1100000]	N
769	chr16	24240724	24240725	rs198160	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p12.1	NR	rs198160-G	NR	3E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
769	chr16	24245089	24245090	rs169140	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	16p12.1	NR	rs169140-?	NR	2E-8			[NR]	NR [1665663]	N
770	chr16	24310281	24310282	rs2107118	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.1	NA	rs2107118-A	0.4998	3E-10		0.0111	[0.0076-0.0146] unit increase	NR [~ 27400000] (imputed)	N
770	chr16	24363768	24363769	rs74013184	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	16p12.1	intergenic	rs74013184-C	0.006	7E-6		7.73	[2.71-22.03]	Illumina [1556551]	N
771	chr16	24508298	24508299	rs17761993	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	16p12.1	intergenic	rs17761993-?	NR	4E-6		2.49	[1.69-3.66]	Illumina [4196861] (imputed)	N
772	chr16	24512549	24512550	rs116598880	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p12.1	NR	rs116598880-?	NR	5E-6		11.352	NR unit increase	Affymetrix [at least 600000] (imputed)	N
772	chr16	24518568	24518569	rs7203707	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16p12.1	CACNG3, RBBP6	rs7203707-C	0.4807	5E-10		1.0198953		Affymetrix [11880941] (imputed)	N
772	chr16	24531717	24531718	rs11643520	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	16p12.1	NR	rs11643520-C	0.1137	5E-6		0.2174	[0.12-0.31] unit increase	Illumina [10677593] (imputed)	N
772	chr16	24531717	24531718	rs11643520	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	16p12.1	RBBP6	rs11643520-?	0.12	6E-7				Illumina [448293]	N
772	chr16	24534661	24534662	rs7196720	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16p12.1		rs7196720-T	0.486	4E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
772	chr16	24540805	24540806	rs2342892	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.1	NR	rs2342892-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
772	chr16	24540805	24540806	rs2342892	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.1	NA	rs2342892-T	0.4855	1E-13		0.0126	[0.0093-0.0159] unit increase	NR [~ 27400000] (imputed)	N
772	chr16	24550929	24550930	rs9922288	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p12.1	RBBP6	rs9922288-A	0.235517	3E-10		0.0105391	[0.0073-0.0138] unit increase	Affymetrix [12370749]	N
772	chr16	24550929	24550930	rs9922288	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p12.1	RBBP6	rs9922288-A	0.235517	1E-8		0.00938916	[0.0062-0.0126] unit increase	Affymetrix [12370749]	N
772	chr16	24578457	24578458	rs7195386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p12.1		rs7195386-C	NR	2E-14		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
772	chr16	24578457	24578458	rs7195386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.1		rs7195386-?	NR	2E-13				NR [~ 8900000] (imputed)	N
772	chr16	24578457	24578458	rs7195386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.1		rs7195386-?	NR	4E-13				NR [~ 8900000] (imputed)	N
772	chr16	24578457	24578458	rs7195386	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.1	NR	rs7195386-T	NR	6E-6		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
772	chr16	24578457	24578458	rs7195386	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p12.1	RBBP6	rs7195386-C	0.53	1E-8		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
772	chr16	24578457	24578458	rs7195386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	RBBP6	rs7195386-A	0.477	9E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
772	chr16	24595998	24595999	rs148133894	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p12.1	NR	rs148133894-?	NR	9E-7		20.479	NR unit increase	Affymetrix [at least 600000] (imputed)	N
772	chr16	24595998	24595999	rs148133894	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16p12.1	NR	rs148133894-?	NR	8E-7	(AA)	20.409878	[12.42-28.4] unit decrease	Affymetrix [at least 600000] (imputed)	N
772	chr16	24600411	24600412	rs143459567	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	16p12.1	RBBP6	rs143459567-T	0.0386	3E-10		0.1185	[0.081-0.156] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
772	chr16	24621347	24621348	rs17831015	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	16p12.1	intergenic	rs17831015-?	NR	7E-6	(EDA Factor scores)	0.092	[0.051-0.133] unit increase	Illumina [527829]	N
772	chr16	24621347	24621348	rs17831015	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	16p12.1	intergenic	rs17831015-?	NR	3E-6	(SCR Frequency)	0.638	[0.37-0.90] unit increase	Illumina [527829]	N
773	chr16	24675588	24675589	rs8045064	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		16p12.1	FLJ45256	rs8045064-?	0.05	4E-8		0.21	unit decrease	Illumina [NR] (imputed)	N
773	chr16	24691647	24691648	rs77989568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p12.1	Intergenic	rs77989568-C	0.2305	1E-8	(MTAG)	0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
773	chr16	24693047	24693048	rs72768626	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16p12.1	NR	rs72768626-G	0.0552	8E-14		0.034006946	[0.025-0.043] unit decrease	Affymetrix [10613246] (imputed)	N
773	chr16	24693047	24693048	rs72768626	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	16p12.1	TNRC6A	rs72768626-A	0.9448	2E-8		5.591	[NR] z score increase	Affymetrix [14069427] (imputed)	N
773	chr16	24693047	24693048	rs72768626	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16p12.1	NR	rs72768626-G	0.0649	1E-13		0.026186276	[0.019-0.033] unit decrease	Affymetrix [NR] (imputed)	N
773	chr16	24693047	24693048	rs72768626	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16p12.1	TNRC6A	rs72768626-A	0.94	1E-10		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
773	chr16	24693047	24693048	rs72768626	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16p12.1	LINC01567	rs72768626-A	0.942	8E-6		0.0098	[0.0055-0.0141] unit increase	Affymetrix [~ 7740000] (imputed)	N
773	chr16	24693047	24693048	rs72768626	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	16p12.1	TNRC6A	rs72768626-A	0.9441	6E-10		0.030120945	[0.021-0.04] unit increase	Affymetrix [11514936] (imputed)	N
773	chr16	24711213	24711214	rs72768642	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p12.1	NR	rs72768642-T	NR	1E-8		5.667	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
773	chr16	24711805	24711806	rs28512462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p12.1	Intergenic	rs28512462-C	0.3845	3E-10	(MTAG)	0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
773	chr16	24711805	24711806	rs28512462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.1		rs28512462-C	0.3789	1E-14		0.0112	[0.0085-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
773	chr16	24711805	24711806	rs28512462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p12.1	Intergenic	rs28512462-C	0.3789	2E-17	(MTAG)	0.0115	[0.009-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
773	chr16	24724000	24724001	rs112927956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p12.1		rs112927956-?	NR	3E-10				NR [~ 8900000] (imputed)	N
773	chr16	24724777	24724778	rs9921750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p12.1		rs9921750-A	NR	6E-19		0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
773	chr16	24726236	24726237	rs12103006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16p12.1	TNRC6A	rs12103006-A	NR	5E-8		0.0172646	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
773	chr16	24726236	24726237	rs12103006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16p12.1	TNRC6A	rs12103006-A	NR	3E-8		0.0174686	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
773	chr16	24727063	24727064	rs7188873	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p12.1		rs7188873-A	0.38	5E-15		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
773	chr16	24727063	24727064	rs7188873	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16p12.1	TNRC6A	rs7188873-A	0.376756	6E-12		0.0146496	[0.01-0.019] unit increase	NR [16516521] (imputed)	N
773	chr16	24727063	24727064	rs7188873	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p12.1	NR	rs7188873-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
773	chr16	24727063	24727064	rs7188873	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16p12.1	TNRC6A	rs7188873-A	0.376011	1E-8		0.03863	[0.025-0.052] unit decrease	Affymetrix [9463307] (imputed)	N
773	chr16	24727063	24727064	rs7188873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p12.1	NR	rs7188873-G	0.613	1E-18		0.00979102	[0.0076-0.012] unit increase	NR [9732723] (imputed)	N
773	chr16	24727063	24727064	rs7188873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p12.1	NR	rs7188873-G	0.612998	8E-15	(Conditioned on chr16:25351633)	0.020295778	[0.015-0.025] unit increase	NR [~ 10000000] (imputed)	N
773	chr16	24727063	24727064	rs7188873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16p12.1		rs7188873-?	NR	4E-8				NR [~ 8900000] (imputed)	N
773	chr16	24727063	24727064	rs7188873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p12.1		rs7188873-?	NR	1E-8				NR [~ 8900000] (imputed)	N
773	chr16	24727063	24727064	rs7188873	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.1		rs7188873-A	0.3867	5E-14	(conditional-joint)	0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
773	chr16	24727063	24727064	rs7188873	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p12.1	NR	rs7188873-A	NR	2E-8		5.605	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
773	chr16	24727063	24727064	rs7188873	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	TNRC6A	rs7188873-A	NR	2E-9		0.01899372	[0.013-0.025] unit increase	Affymetrix [NR]	N
773	chr16	24728226	24728227	rs12708665	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	16p12.1	LINC01567, TNRC6A	rs12708665-A		1E-8		0.978	[NR]	Affymetrix [up to 79000000] (imputed)	N
773	chr16	24728226	24728227	rs12708665	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16p12.1	PDGFC	rs12708665-?		3E-11				NR [7428630] (imputed)	N
773	chr16	24728226	24728227	rs12708665	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16p12.1	TNRC6A, SLC5A11	rs12708665-?		2E-13				NR [7428630] (imputed)	N
773	chr16	24728226	24728227	rs12708665	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16p12.1		rs12708665-A	0.285	4E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
773	chr16	24728226	24728227	rs12708665	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	16p12.1	NR	rs12708665-G	0.712	9E-10		0.0104373	[0.0071-0.0138] unit increase	NR [9732723] (imputed)	N
773	chr16	24728226	24728227	rs12708665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p12.1		rs12708665-?	NR	1E-28				NR [~ 8900000] (imputed)	N
773	chr16	24728226	24728227	rs12708665	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	16p12.1	LINC01567, TNRC6A	rs12708665-?	NR	3E-9		0.422	[0.27-0.57] unit decrease	Affymetrix [11100000] (imputed)	N
773	chr16	24730229	24730230	rs2188717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p12.1		rs2188717-C	NR	8E-16		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
773	chr16	24730229	24730230	rs2188717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16p12.1		rs2188717-C	NR	6E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
773	chr16	24730229	24730230	rs2188717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p12.1		rs2188717-?	NR	2E-18				NR [~ 8900000] (imputed)	N
773	chr16	24730229	24730230	rs2188717	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p12.1	TNRC6A	rs2188717-T	0.1825	1E-13		0.3316	[0.24-0.42] mmHg decrease	Affymetrix [NR] (imputed)	N
773	chr16	24733140	24733141	rs200541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16p12.1		rs200541-G	NR	1E-8		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
773	chr16	24733140	24733141	rs200541	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p12.1	RBBP6, TNRC6A	rs200541-A		9E-9		0.281	unit decrease	Affymetrix [at least 2696785] (imputed)	N
773	chr16	24733140	24733141	rs200541	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p12.1	RBBP6, TNRC6A	rs200541-A		8E-8		0.175	unit decrease	Affymetrix [at least 2696785] (imputed)	N
773	chr16	24733750	24733751	rs13329943	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p12.1		rs13329943-T	0.73	4E-11				NR [NR] (imputed)	N
773	chr16	24733750	24733751	rs13329943	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p12.1		rs13329943-T	0.73	1E-15		0.013	% increase	NR [NR] (imputed)	N
773	chr16	24733750	24733751	rs13329943	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p12.1	TNRC6A	rs13329943-C	0.268201	3E-13		0.0113063	[0.0083-0.0143] unit decrease	Affymetrix [12370749]	N
773	chr16	24741685	24741686	rs7202252	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	16p12.1	TNRC6A	rs7202252-T	0.266568	5E-8		5.46	z score decrease	NR [10847151] (imputed)	N
773	chr16	24752640	24752641	rs200534	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p12.1	TNRC6A	rs200534-G	0.7338	3E-10		0.1758	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
773	chr16	24758400	24758400	rs112506159	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p12.1	NR	rs112506159-A	0.2656	7E-14		0.021058112	[0.016-0.027] unit decrease	Affymetrix [10549349] (imputed)	N
773	chr16	24759130	24759131	rs200528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16p12.1		rs200528-G	NR	6E-21		0.0244	[0.019-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
773	chr16	24759130	24759131	rs200528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16p12.1		rs200528-G	NR	3E-16		0.0203	[0.015-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
773	chr16	24759130	24759131	rs200528	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	16p12.1	SLC5A11, TNRC6A	rs200528-?	NR	1E-8				Affymetrix [up to 7325140] (imputed)	N
773	chr16	24761045	24761046	rs181042823	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p12.1	TNRC6A	rs181042823-A	0.00373000000000001	6E-21		0.18034713	[0.14-0.22] unit increase	Affymetrix [93095623] (imputed)	N
773	chr16	24761045	24761046	rs181042823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs181042823-G	0.996297	3E-31				Affymetrix, Illumina [17210439] (imputed)	N
773	chr16	24761045	24761046	rs181042823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p12.1	NR	rs181042823-G	0.996211	3E-34		0.201255	[0.17-0.23] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
773	chr16	24766840	24766841	rs34172651	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16p12.1		rs34172651-?	NR	4E-9				NR [7857346] (imputed)	N
773	chr16	24766840	24766841	rs34172651	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p12.1	NR	rs34172651-T	NR	1E-12		7.122	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
773	chr16	24766840	24766841	rs34172651	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p12.1	TNRC6A	rs34172651-T	NR	1E-9		6.059	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
773	chr16	24766840	24766841	rs34172651	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	TNRC6A	rs34172651-T	NR	6E-10		0.0205231	[0.014-0.027] unit decrease	Affymetrix [NR]	N
774	chr16	24775437	24775438	rs12930481	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16p12.1	NR	rs12930481-G	0.277	6E-11		0.0107512	[0.0075-0.014] unit increase	NR [9732723] (imputed)	N
774	chr16	24784474	24784475	rs7204281	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.1	NR	rs7204281-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
774	chr16	24784474	24784475	rs7204281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p12.1		rs7204281-?	NR	5E-12				NR [~ 8900000] (imputed)	N
774	chr16	24788644	24788645	rs11639856	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	16p12.1	TNRC6A	rs11639856-A	0.193	1E-8		0.34	[0.22-0.46] unit decrease	Illumina [247039]	N
774	chr16	24788644	24788645	rs11639856	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	16p12.1	TNRC6A	rs11639856-A	0.193	2E-8		0.23	[0.15-0.31] unit decrease	Illumina [247039]	N
774	chr16	24792241	24792242	rs17771137	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	16p12.1	TNRC6A	rs17771137-A	0.2639	1E-8		0.012929388	[0.0085-0.0174] unit increase	Affymetrix [up to 18485882] (imputed)	N
774	chr16	24798078	24798079	rs12923476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p12.1		rs12923476-A	NR	1E-18		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
774	chr16	24803619	24803620	rs1862451	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16p12.1	NR	rs1862451-A	0.267396	4E-10		0.044476002	[0.031-0.058] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
774	chr16	24803619	24803620	rs1862451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p12.1	Intergenic	rs1862451-A	0.7302	7E-12	(MTAG)	0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
774	chr16	24803619	24803620	rs1862451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16p12.1	Intergenic	rs1862451-A	0.7302	3E-10		0.0202	[0.014-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
774	chr16	24806419	24806420	rs7186893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p12.1	NA	rs7186893-T	0.2635	1E-11		0.0137	[0.0098-0.0176] unit decrease	NR [~ 27400000] (imputed)	N
774	chr16	24806419	24806420	rs7186893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p12.1	NA	rs7186893-T	0.2631	1E-13		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
774	chr16	24806419	24806420	rs7186893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p12.1	NA	rs7186893-T	0.2631	1E-13		0.0143	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
774	chr16	24810680	24810681	rs17177078	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	16p12.1	TNRC6A	rs17177078-T	0.0554	4E-9		0.0327	[0.022-0.044] unit decrease	Illumina [~ 250000] (imputed)	N
774	chr16	24810680	24810681	rs17177078	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16p12.1	NR	rs17177078-T	0.0626	6E-16		0.0220624	[0.017-0.027] unit decrease	NR [~ 9732723] (imputed)	N
774	chr16	24810680	24810681	rs17177078	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16p12.1	NR	rs17177078-T	0.0626	1E-13		0.02231549	[0.016-0.028] unit decrease	NR [~ 10000000] (imputed)	N
774	chr16	24810680	24810681	rs17177078	23386860	Pasquale LR	2013-01-30	Front Genet	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NA	16p12.1	TNRC6A	rs17177078-?	NR	5E-6		0.83	[NR] unit increase	Affymetrix [681770]	N
774	chr16	24830838	24830839	rs8048855	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p12.1	TNRC6A	rs8048855-G	0.199337	2E-10		0.0113	[0.0078-0.0148] unit increase	Affymetrix [12370749]	N
774	chr16	24835167	24835168	rs2303083	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p12.1		rs2303083-A	0.16	3E-22		9.7	z score increase	Affymetrix [9061022] (imputed)	N
774	chr16	24835167	24835168	rs2303083	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16p12.1	NR	rs2303083-A	0.1965	1E-17				NR [9056863] (imputed)	N
774	chr16	24837838	24837838	rs11419346	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p12.1	NR	rs11419346-C	0.797475	4E-8		0.00788553	[0.005-0.0108] unit increase	Affymetrix [16582621] (imputed)	N
774	chr16	24837904	24837905	rs8059004	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16p12.1		rs8059004-A	0.16	4E-14		7.55	z score increase	Affymetrix [9061022] (imputed)	N
774	chr16	24837904	24837905	rs8059004	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p12.1	NR	rs8059004-A	0.1971	2E-16				NR [9056863] (imputed)	N
774	chr16	24842817	24842818	rs71391580	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p12.1		rs71391580-G	0.16	1E-18		8.79	z score increase	Affymetrix [9061022] (imputed)	N
774	chr16	24844402	24844403	rs12923918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p12.1		rs12923918-?	NR	6E-9				NR [~ 8900000] (imputed)	N
774	chr16	24848470	24848471	rs7186308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16p12.1		rs7186308-G	NR	6E-10		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
774	chr16	24848470	24848471	rs7186308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p12.1		rs7186308-?	NR	4E-9				NR [~ 8900000] (imputed)	N
774	chr16	24856207	24856208	rs34365165	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p12.1	SLC5A11	rs34365165-G	0.806101	6E-10		0.0144589	[0.0099-0.019] unit increase	NR [13737936] (imputed)	N
774	chr16	24879962	24879963	rs12926788	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p12.1	NR	rs12926788-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
774	chr16	24898971	24898972	rs274068	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	16p12.1	SLC5A11	rs274068-C	NR	5E-7	(Recessive)	2.85	[1.93-4.22]	Affymetrix, Illumina [1621689] (imputed)	N
775	chr16	24926313	24926314	rs72770483	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p12.1	SLC5A11	rs72770483-G	0.08	7E-30	(myo-inositol)	1.153	[0.95-1.35] unit increase	Illumina [7750367] (imputed)	N
775	chr16	24931690	24931691	rs55808472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	16p12.1	NR	rs55808472-A	NR	2E-12		0.0346	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
775	chr16	24931690	24931691	rs55808472	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p12.1	ARHGAP17	rs55808472-A	0.0727650759717614	6E-10	(G_Butyricicoccus_RNT)	0.257076	[0.18-0.34] unit increase	Illumina [7711310] (imputed)	N
775	chr16	24931797	24931798	rs4788439	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p12.1	SLC5A11	rs4788439-T	0.08	7E-13	(myo-inositol)	0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
775	chr16	24950879	24950880	rs78457529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p12.1	ARHGAP17	rs78457529-T	0.0117	1E-24		0.0904	[0.073-0.108] unit decrease	Affymetrix [18391927] (imputed)	N
775	chr16	24950879	24950880	rs78457529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	16p12.1	ARHGAP17	rs78457529-T	0.012	5E-17		0.1	[0.076-0.124] unit decrease	Affymetrix [18391927] (imputed)	N
775	chr16	24950879	24950880	rs78457529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	16p12.1	ARHGAP17	rs78457529-T	0.012	7E-10		0.08	[0.055-0.105] unit decrease	Affymetrix [18391927] (imputed)	N
775	chr16	24950879	24950880	rs78457529	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16p12.1	NR	rs78457529-T	0.0113429	4E-9		0.192361	[0.13-0.26] unit decrease	Affymetrix [17914406] (imputed)	N
775	chr16	24972534	24972537	rs139723846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16p12.1		rs139723846-A	NR	3E-11		0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
775	chr16	25002349	25002350	rs4787294	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16p12.1	SLC5A11	rs4787294-A	0.93	1E-20	(scyllo-inositol)	0.075	[0.059-0.091] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
775	chr16	25002599	25002600	rs17702912	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	16p12.1	SLC5A11	rs17702912-T	0.07	9E-66	(3.594 ppm/1.067 ppm)	0.5171	[NR] unit increase	Affymetrix [620456]	N
776	chr16	25066415	25066416	rs9935790	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	16p12.1		rs9935790-T	NR	4E-6		1.29	[1.16-1.44]	Illumina [7591411] (imputed)	N
777	chr16	25180647	25180648	rs111254682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.1	NR	rs111254682-T	0.01045	2E-8	(LDHB)	0.1612	NR unit increase	Illumina [1671387] (imputed)	N
777	chr16	25201979	25201980	rs57933945	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft palate	272 Asian ancestry case-parent trios, 161 Asian ancestry controls, 38 European ancestry cases, 296 European ancestry case-parent trios, 835 European ancestry controls, 40 Latino or African cases, 34 Latino or African case-parent trios, 704 Latino or African controls, 14 case-parent trios.	NA	16p12.1	LCMT1	rs57933945-?	NR	3E-6	(Asian)	2.857143	[1.85-4.35]	Illumina [6090031] (imputed)	N
777	chr16	25221815	25221816	rs189297294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16p12.1	Intergenic	rs189297294-C	0.976	4E-6	(AA)	0.464	NR unit increase	Illumina [NR] (imputed)	N
777	chr16	25223836	25223837	rs58646300	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	16p12.1		rs58646300-A	0.816257	4E-6		0.0165658	[0.0095-0.0236] unit decrease	Illumina [13900000] (imputed)	N
777	chr16	25226019	25226020	rs11649311	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	16p12.1	AQP8	rs11649311-T	0.3413	2E-6		1.6818029		Illumina [7559010] (imputed)	N
778	chr16	25307075	25307076	rs4787717	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16p12.1	ZKSCAN2	rs4787717-A	0.8365	8E-7		0.0068	[0.0041-0.0095] unit increase	Affymetrix [~ 7740000] (imputed)	N
778	chr16	25351632	25351633	rs6497840	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16p12.1	NR	rs6497840-A	0.707	1E-21		0.0115813	[0.0092-0.014] unit increase	NR [9732723] (imputed)	N
778	chr16	25351632	25351633	rs6497840	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16p12.1	NR	rs6497840-A	0.707	2E-15		0.022770278	[0.017-0.028] unit increase	NR [~ 10000000] (imputed)	N
778	chr16	25351632	25351633	rs6497840	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16p12.1	NR	rs6497840-A	0.71	5E-10		0.0100816	[0.0069-0.0133] unit decrease	NR [9732723] (imputed)	N
778	chr16	25351933	25351934	rs7201336	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p12.1		rs7201336-G	0.292	1E-19		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
778	chr16	25351947	25351948	rs7200801	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16p12.1	ZKSCAN2	rs7200801-A	0.2852	8E-9		0.01646068	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
778	chr16	25371606	25371607	rs8047349	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16p12.1	NR	rs8047349-G	0.699	1E-11		0.00981266	[0.007-0.0126] unit increase	NR [~ 9732723] (imputed)	N
778	chr16	25371715	25371716	rs8047834	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16p12.1	ZKSCAN2	rs8047834-A	0.7022	1E-8		0.012460934	[0.0082-0.0168] unit increase	Affymetrix [11514654] (imputed)	N
778	chr16	25378346	25378347	rs9646259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16p12.1		rs9646259-?	NR	2E-8				NR [~ 8900000] (imputed)	N
778	chr16	25427471	25427472	rs2345546	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	16p12.1	intergenic	rs2345546-C	0.882	2E-6	(AA)	0.855	unit increase	Illumina [at least 5086170] (imputed)	N
779	chr16	25468082	25468083	rs972741	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	16p12.1	ZKSCAN2, HS3ST4	rs972741-A	0.19	9E-7		0.66	NR unit increase	Illumina [336151] (imputed)	N
779	chr16	25500441	25500442	rs142916547	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p12.1	Intergenic	rs142916547-G	0.999	8E-7	(AA)	0.422	unit increase	Illumina [NR] (imputed)	N
779	chr16	25529892	25529893	rs57514421	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	16p12.1	NR	25529893-T		2E-6		0.1507	[0.088-0.213] unit increase	Illumina [at least 4916924] (imputed)	N
779	chr16	25533629	25533630	rs115475484	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	16p12.1		rs115475484-?	NR	3E-6		1.8288181	[1.07-2.59] unit increase	Illumina [9842460] (imputed)	N
780	chr16	25568571	25568572	rs146813585	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Testosterone levels in polycystic ovary syndrome	957 European ancestry cases	1,516 European ancestry cases	16p12.1	intergenic	rs146813585-G	0.04	3E-6		22.27	[14.04-30.50] ng/dL increase	Illumina [at least 624044] (imputed)	N
780	chr16	25596494	25596495	rs72775085	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	16p12.1		rs72775085-?	NR	3E-9				Illumina [1128286]	N
780	chr16	25652252	25652253	rs17795215	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of perseverance	22,861 European ancestry individuals	NA	16p12.1	ZKSCAN2, HS3ST4	rs17795215-T	0.2181	6E-7		0.054	[0.075-0.033] unit decrease	Illumina [11914280] (imputed)	N
781	chr16	25781769	25781770	rs16975201	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16p12.1	HS3ST4	rs16975201-G	0.0302565319375581	8E-6	(G_unclassified_F_Prevotellaceae_HB)	0.794682	[0.45-1.14] unit increase	Illumina [7711310] (imputed)	N
782	chr16	25838493	25838494	rs3803713	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	16p12.1	HS3ST4	rs3803713-T	0.15	8E-8		0.111	[0.072-0.15] unit increase	Illumina [544877]	N
782	chr16	25885969	25885970	rs60218192	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	16p12.1	HS3ST4	rs60218192-A	NR	6E-7		4.76	[2.58-8.81]	Illumina [NR]	N
782	chr16	25900979	25900980	rs4787778	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	16p12.1	HS3ST4	rs4787778-C	0.26	1E-6	(Nasal bridge angle)	0.437	[NR] unit decrease	Affymetrix [311944]	N
782	chr16	25944543	25944544	rs117559033	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16p12.1	NR	rs117559033-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
783	chr16	25967103	25967104	rs9938946	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	16p12.1	HS3ST4	rs9938946-?	NR	3E-6		3.774	unit increase (EA, Australian cohort)	Illumina [610255]	N
783	chr16	25996613	25996614	rs79590629	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	16p12.1	HS3ST4	rs79590629-C	0.06	2E-7		1.73		Illumina [8974355] (imputed)	N
784	chr16	26092515	26092516	rs4787347	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	16p12.1	HS3ST4	rs4787347-G		7E-7	(women)	0.067	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
784	chr16	26103396	26103397	rs11861027	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p12.1	HS3ST4	rs11861027-?		9E-6				Illumina [4322238] (imputed)	N
784	chr16	26129782	26129783	rs4129575	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	16p12.1	NR	rs4129575-A	NR	8E-6		1.31	[NR]	Illumina [up to 9792010] (imputed)	N
784	chr16	26152154	26152155	rs7206188	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	16p12.1	NR	rs7206188-T	0.56	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
784	chr16	26170939	26170940	rs9933429	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	HS3ST4	rs9933429-A	0.305	7E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
785	chr16	26288750	26288751	rs12448740	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	C16orf82	rs12448740-?	NR	4E-7	(SM 22:0)	0.24426873	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
786	chr16	26451442	26451443	rs11074779	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	16p12.1	HS3ST4, C16orf82	rs11074779-T	0.19	3E-8	(RAVLT-dr, EA)	0.4033	[0.26-0.55] unit increase	Affymetrix, Illumina [NR] (imputed)	N
786	chr16	26451442	26451443	rs11074779	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	16p12.1	HS3ST4, C16orf82	rs11074779-T	0.19	1E-7	(RAVLT-dr)	0.3757	[0.24-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
787	chr16	26505010	26505011	rs11074782	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea (average oxygen saturation during sleep)	12,557 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	16p12.1	intergenic	rs11074782-T	0.23	2E-6	(Hispanic, males)	0.113	[0.066-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
787	chr16	26517132	26517133	rs79090407	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p12.1	NR	rs79090407-A	NR	2E-6		1.12	[NR]	Illumina [7158791] (imputed)	N
787	chr16	26539261	26539262	rs35874699	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	16p12.1	Intergenic	rs35874699-?		5E-6		1.2886598	[NR]	Affymetrix [492217] (imputed)	N
787	chr16	26556886	26556887	rs72787939	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	16p12.1	HS3ST4	rs72787939-?		2E-7		15.85	[10.7-21] unit increase	Illumina [~ 4900000] (imputed)	N
787	chr16	26556886	26556887	rs72787939	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	16p12.1	NR	rs72787939-?		6E-7		4.617	[3.01-6.22] unit increase	Illumina [~ 4900000] (imputed)	N
787	chr16	26577906	26577907	rs150296526	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16p12.1	NR	rs150296526-?	NR	9E-6		0.764812	[0.43-1.1] unit increase	NR [13958389] (imputed)	N
788	chr16	26617664	26617665	rs184666	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	16p12.1	C16orf82	rs184666-T	0.9142	5E-6	(AA)			Illumina [NR] (imputed)	N
788	chr16	26649639	26649640	rs237149	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	16p12.1	NR	rs237149-G	NR	1E-5		0.082	[0.047-0.117] unit decrease	Illumina [6319684] (imputed)	N
789	chr16	26763225	26763226	rs11862783	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p12.1	NR	rs11862783-?		9E-6				Illumina [4322238] (imputed)	N
789	chr16	26817312	26817313	rs1559318	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.1	AC009035.1	rs1559318-A	0.2745	9E-7		0.039	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
789	chr16	26817312	26817313	rs1559318	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p12.1	AC009035.1	rs1559318-A	0.2745	9E-7		0.039	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
789	chr16	26832008	26832009	rs188911869	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	16p12.1		rs188911869-A	0.99	3E-12				NR [NR] (imputed)	N
789	chr16	26832008	26832009	rs188911869	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	16p12.1		rs188911869-A	0.99	3E-9		0.8	[0.43-1.17] unit decrease	NR [NR] (imputed)	N
789	chr16	26832008	26832009	rs188911869	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	16p12.1		rs188911869-A	0.99	2E-9				NR [NR] (imputed)	N
789	chr16	26832008	26832009	rs188911869	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	16p12.1		rs188911869-A	0.99	3E-9		2.77	[1.85-3.69] unit increase	NR [NR] (imputed)	N
790	chr16	26890739	26890740	rs190703705	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	16p12.1		rs190703705-A	NR	4E-6		1.43075		Affymetrix, Illumina [62056310] (imputed)	N
790	chr16	26959697	26959698	rs62029775	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	16p12.1	NR	rs62029775-T	NR	2E-6	(Hispanic)	2.48	[1.48-3.48] unit increase	Affymetrix [14000000] (imputed)	N
790	chr16	26963358	26963359	rs539098146	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	16p12.1	C16orf82	rs539098146-C	0.0054	8E-6		0.4003	[0.22-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
790	chr16	26968416	26968417	rs147917669	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p12.1	C16orf82	rs147917669-T	0.0154	6E-6		0.1459	[0.083-0.209] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
791	chr16	27017494	27017495	rs62031988	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	16p12.1	C16orf82	rs62031988-C	0.01492	2E-8		0.7004	[0.46-0.94] unit increase	Illumina [10677593] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	9E-7	(TAG 46:1)	0.2621012	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	7E-6	(TAG 46:2)	0.2411338	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	5E-7	(TAG 48:1)	0.26973987	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	4E-7	(PC 32:1)	0.27009654	[0.17-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	3E-7	(TAG 48:0)	0.2785027	[0.17-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27023420	27023421	rs908389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p12.1	JMJD5	rs908389-?	NR	2E-6	(TAG 44:1)	0.25513983	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr16	27056454	27056455	rs2203512	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	16p12.1	AC092725.3	rs2203512-?	0.1394	3E-7	(PRM)			Illumina [475971]	N
791	chr16	27105376	27105377	rs10163217	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	16p12.1	Intergenic	rs10163217-G	NR	9E-6	(men)	0.0217603	[0.012-0.031] unit decrease	Illumina [13520550] (imputed)	N
791	chr16	27109167	27109168	rs116147458	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p12.1	NR	rs116147458-G	0.01045	4E-10	(TTN)	1.393	NR unit increase	Illumina [1671387] (imputed)	N
792	chr16	27190328	27190329	rs7203027	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	16p12.1	NR	rs7203027-T	0.8441	8E-6		0.2169	[0.12-0.31] unit decrease	Illumina [NR] (imputed)	N
792	chr16	27214983	27214984	rs16976587	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	JMJD5	rs16976587-A	0.0060	9E-6	(Folate )	0.02	[NR] nmol/L increase	Illumina [899892]	N
792	chr16	27242879	27242880	rs11643134	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16p12.1	NSMCE1, KDM8, IL4R, EEF1A1P38	rs11643134-C	NR	4E-6	(resting duration)	0.1974	[0.11-0.28] unit increase	Affymetrix [7141204] (imputed)	N
792	chr16	27245711	27245712	rs34939984	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	16p12.1	NSMCE1, KDM8, FLJ21408, IL4R, C16orf82, IL21R	rs34939984-T	0.35938	5E-11		1.04375	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
793	chr16	27270606	27270607	rs9940555	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16p12.1	NSMCE1	rs9940555-G	0.17	4E-8	(AA)	7.72	[6.72-8.72]	Illumina [905956]	N
793	chr16	27275247	27275248	rs11646066	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	16p12.1	NSMCE1	rs11646066-A	0.0153075	3E-8		0.20485985	[0.13-0.28] unit decrease	Affymetrix [7288503] (imputed)	N
793	chr16	27276726	27276727	rs4523932	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p12.1	NSMCE1	rs4523932-A	0.0119	5E-6	(conditional)	0.1047	NR unit decrease	NR [NR]	N
793	chr16	27280631	27280632	rs8052566	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p12.1	NR	rs8052566-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27281428	27281429	rs12149695	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	16p12.1	NSMCE1, FLJ21408, KDM8	rs12149695-A	NR	2E-9	(OTU10032 unclassified Enterobacteriaceae)	0.61	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
793	chr16	27327213	27327214	rs8060025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16p12.1		rs8060025-G	NR	3E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
793	chr16	27327213	27327214	rs8060025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p12.1	NR	rs8060025-G	NR	1E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr16	27327213	27327214	rs8060025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16p12.1	NR	rs8060025-G	NR	2E-14		0.0187	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr16	27327213	27327214	rs8060025	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p12.1	NR	rs8060025-T	0.388933	1E-18		0.0189572	[0.015-0.023] unit increase	NR [NR]	N
793	chr16	27343962	27343963	rs4787951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16p12.1	IL4R	rs4787951-C	0.2957	3E-10		0.02476326	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
793	chr16	27348483	27348484	rs143021546	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	16p12.1	NR	rs143021546-G	0.98377	3E-10		1.2528188	[1.17-1.34]	Affymetrix [15688218] (imputed)	N
793	chr16	27349167	27349168	rs3785356	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	16p12.1	IL4R	rs3785356-T	0.297949535279777	4E-15		0.056300007	[0.042-0.07] unit increase	Affymetrix [35186738] (imputed)	N
793	chr16	27349167	27349168	rs3785356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p12.1	IL4R	rs3785356-T	0.298236	3E-27		0.026634572	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
793	chr16	27349167	27349168	rs3785356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p12.1	NR	rs3785356-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	16p12.1	NR	rs3785356-?	NR	3E-11	(conditional)			Affymetrix [15688218] (imputed)	N
793	chr16	27349167	27349168	rs3785356	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	16p12.1	IL4R, NSMCE, IL21R	rs3785356-T	0.297	6E-13		1.122	[1.087-1.157]	Affymetrix [10894596] (imputed)	N
793	chr16	27349167	27349168	rs3785356	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	16p12.1	IL4R	rs3785356-T	0.294	5E-9		1.065	[1.04-1.09]	Affymetrix [9000000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	16p12.1	IL4R	rs3785356-?	NR	9E-27		1.089	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	16p12.1	IL4R	rs3785356-T	NR	3E-14		1.058	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	16p12.1		rs3785356-?	NR	5E-16				NR [~ 8900000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16p12.1	IL4R	rs3785356-T	0.2971	2E-10		0.02504266	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
793	chr16	27349167	27349168	rs3785356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p12.1	IL4R	rs3785356-T	0.2972	2E-12		0.02757003	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
793	chr16	27349437	27349438	rs9940480	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p12.1	NR	rs9940480-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27351337	27351338	rs2057767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	16p12.1		rs2057767-G	NR	2E-15		0.0657	[0.05-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
793	chr16	27355361	27355362	rs3024556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	16p12.1		rs3024556-A	NR	1E-24		0.0764	[0.062-0.091] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
793	chr16	27356358	27356359	rs2074572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p12.1		rs2074572-T	NR	5E-34		0.0206	[0.017-0.024] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
793	chr16	27356358	27356359	rs2074572	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p12.1		rs2074572-C	0.641	2E-19				Affymetrix [10369434] (imputed)	N
793	chr16	27356397	27356398	rs2072130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p12.1	IL4R	rs2072130-T	0.364862	4E-31		0.027154533	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
793	chr16	27356397	27356398	rs2072130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs2072130-T	0.400334	3E-49				Affymetrix, Illumina [19872809] (imputed)	N
793	chr16	27356397	27356398	rs2072130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p12.1	NR	rs2072130-T	0.364261	7E-44		0.028666	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
793	chr16	27356397	27356398	rs2072130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p12.1		rs2072130-?	NR	2E-48				NR [~ 8900000] (imputed)	N
793	chr16	27358131	27358132	rs3024575	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	16p12.1		rs3024575-T	NR	2E-8		0.0486	[0.032-0.065] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
793	chr16	27358202	27358203	rs3024577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	16p12.1		rs3024577-G	0.711304057	3E-16		0.1230239	[0.094-0.153] unit increase	Illumina [13429513] (imputed)	N
793	chr16	27358202	27358203	rs3024577	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	16p12.1		rs3024577-G	0.713095495	8E-16		1.1553274	[1.115464161-1.196615338]	Illumina [8919992] (imputed)	N
793	chr16	27359020	27359021	rs2239347	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	16p12.1	IL4R	rs2239347-C	0.459344	1E-13		0.06705399	[0.049-0.085] unit increase	Affymetrix [7288503] (imputed)	N
793	chr16	27359060	27359061	rs2239346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	16p12.1	NR	rs2239346-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27359514	27359515	rs145986476	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	16p12.1	FLJ21408, IL4R, NSMCE1	rs145986476-C	0.993103	1E-12		1.3086015	[1.23-1.38]	Affymetrix [8274727] (imputed)	N
793	chr16	27360626	27360627	rs3024589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	16p12.1	NR	rs3024589-A	0.288264	6E-10		0.032746	[0.022-0.043] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
793	chr16	27364805	27364806	rs3024619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	16p12.1		rs3024619-A	NR	3E-13		0.0708	[0.052-0.09] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
793	chr16	27364805	27364806	rs3024619	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	16p12.1	NR	rs3024619-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27365309	27365310	rs140152038	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	16p12.1	NR	rs140152038-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27365309	27365310	rs140152038	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	16p12.1	NR	rs140152038-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27365452	27365453	rs3024622	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	16p12.1	IL4R	rs3024622-G	0.350356	7E-22		1.0627002	1.04960343556163-1.07596031623203]	NR [9572556] (imputed)	N
793	chr16	27365452	27365453	rs3024622	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	16p12.1	FLJ21408, IL4R, KDM8, NSMCE1	rs3024622-G	0.351748	2E-17		1.0560364	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
793	chr16	27369501	27369502	rs3024655	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	16p12.1	IL4R	rs3024655-G	0.93	6E-25				NR [> 9500000] (imputed)	N
793	chr16	27369501	27369502	rs3024655	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	16p12.1	IL4R	rs3024655-?	NR	1E-11		1.105	[1.08-1.13]	Affymetrix [9000000] (imputed)	N
793	chr16	27369501	27369502	rs3024655	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	16p12.1	IL4R	rs3024655-G	NR	4E-20		1.139	[1.11-1.17]	Affymetrix [9000000] (imputed)	N
793	chr16	27371423	27371424	rs3024664	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p12.1		rs3024664-T	0.06	1E-11				Affymetrix [10369434] (imputed)	N
793	chr16	27371423	27371424	rs3024664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p12.1	IL4R	rs3024664-C	0.9398584	8E-15		0.03692024	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
793	chr16	27371423	27371424	rs3024664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p12.1	IL4R	rs3024664-C	0.93986	2E-13		0.035136845	[0.026-0.044] unit increase	Affymetrix [93095623] (imputed)	N
793	chr16	27371423	27371424	rs3024664	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	16p12.1	IL4R, IL21R, FLJ21408, IL21R-AS1, NSMCE1, GTF3C1	rs3024664-C	0.93947	4E-17		1.12067	[1.09-1.15]	Affymetrix [32463443] (imputed)	N
793	chr16	27371423	27371424	rs3024664	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	16p12.1	IL4R	rs3024664-T	0.05908	6E-17				Affymetrix [15688218] (imputed)	N
793	chr16	27371538	27371539	rs3024665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	16p12.1		rs3024665-?	NR	8E-9				NR [~ 8900000] (imputed)	N
793	chr16	27371583	27371584	rs3024667	25488688	Pino-Yanes M	2014-12-06	J Allergy Clin Immunol	Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos.	Serum IgE levels	1,854 Hispanic asthmatic individuals, 1,480 Hispanic individuals	454 Hispanic asthmatic individuals	16p12.1	IL4R, IL21R	rs3024667-T	NR	2E-6		0.28	[0.17-0.39] unit decrease	Affymetrix [723888]	N
793	chr16	27373979	27373980	rs1805013	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	16p12.1	IL4R	rs1805013-T	0.05	8E-7		1.22	[1.13-1.32]	Illumina [2387926] (imputed)	N
793	chr16	27374399	27374400	rs1801275	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	16p12.1	IL4R	rs1801275-G	NR	1E-7		0.05	[NR] unit increase	Affymetrix [2540223] (imputed)	N
793	chr16	27380671	27380672	rs75763833	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16p12.1	NR	rs75763833-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
793	chr16	27381647	27381648	rs77315098	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	16p12.1	IL4R	rs77315098-C	0.924096	1E-13		1.0916615	[1.07-1.11]	Affymetrix [8274727] (imputed)	N
794	chr16	27397997	27397998	rs1859308	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (asymptomatic neurocogntive impairment)	155 African American cases, 150 European ancestry cases, 49 Hispanic cases, 5 cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	16p12.1	intergenic	rs1859308-G		2E-6		2.4875622	[NR]	Affymetrix [NR]	N
794	chr16	27397997	27397998	rs1859308	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	16p12.1	IL4R, IL21R	rs1859308-C		2E-7		1.1764705	[1.08-1.30]	Illumina [1143634] (imputed)	N
794	chr16	27403468	27403469	rs1119132	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16p12.1		rs1119132-A	NR	4E-14		0.208439	[0.15-0.26] unit decrease	NR [2787054] (imputed)	N
794	chr16	27403468	27403469	rs1119132	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	16p12.1		rs1119132-A	NR	7E-10		0.20264	[0.14-0.27] unit decrease	NR [5054572] (imputed)	N
794	chr16	27403468	27403469	rs1119132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p12.1	NR	rs1119132-G	NR	9E-14		0.0271	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr16	27406688	27406689	rs34411505	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	16p12.1	IL4R, IL21R	rs34411505-A	0.84	6E-7		1.1627907		Illumina [5546030] (imputed)	N
794	chr16	27410828	27410829	rs2107357	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	16p12.1	IL21R, IL4R	rs2107357-A	0.1382	3E-7		0.0879	[0.054-0.122] unit increase	Illumina [2400000] (imputed)	N
794	chr16	27413565	27413566	rs2189521	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16p12.1		rs2189521-C	NR	2E-6		0.217552	[0.13-0.31] unit decrease	NR [5275424] (imputed)	N
794	chr16	27413565	27413566	rs2189521	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	16p12.1	IL4R, IL21R	rs2189521-?	0.7	4E-16		1.4084507		Illumina [776516]	N
794	chr16	27414377	27414378	rs6498021	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	16p12.1	IL21R, IL4R, IL21R-AS1, GTF3C1, FLJ21408, NSMCE1	rs6498021-T	0.13956	3E-8		1.0515357	[1.03-1.08]	Affymetrix [32463443] (imputed)	N
794	chr16	27417644	27417645	rs179772	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16p12.1	IL21R	rs179772-G	NR	8E-6		0.026523	[0.015-0.038] unit increase	Illumina [13520550] (imputed)	N
794	chr16	27417743	27417744	rs179771	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	16p12.1	IL21R, IL21R-AS1, IL4R, GTF3C1, FLJ21408, NSMCE1	rs179771-C	0.48796	3E-9		1.03829	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
794	chr16	27420036	27420037	rs1158136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16p12.1	NR	rs1158136-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
794	chr16	27434926	27434927	rs8057551	19874204	Guo Y	2009-10-29	J Bone Miner Res	IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study.	Bone mineral density	983 European ancestry individuals	2,557 European ancestry individuals from 750 families	16p12.1	IL21R	rs8057551-G	0.32	2E-6		0.11	[NR] s.d. increase	Affymetrix [342854]	N
794	chr16	27441282	27441283	rs179760	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	16p12.1	Intergenic	rs179760-?	NR	9E-6		1.391	[NR]	Affymetrix [492217] (imputed)	N
794	chr16	27480796	27480797	rs61739285	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16p12.1		rs61739285-T	0.0342	5E-10		0.23547193	[0.16-0.31] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034235	3E-9		0.035827894	[0.024-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034214	9E-10		0.03728135	[0.025-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034216	6E-12		0.041913554	[0.03-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034276	7E-16		0.049516756	[0.038-0.062] unit increase	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034318	2E-12		0.043456536	[0.031-0.056] unit increase	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16p12.1	GTF3C1	rs61739285-T	0.034215	1E-14		0.04683729	[0.035-0.059] unit increase	Affymetrix [93095623] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p12.1	NR	rs61739285-T	0.033259	1E-10		0.033699	[0.023-0.044] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs61739285-T	0.0321416	6E-12				Affymetrix, Illumina [23114412] (imputed)	N
794	chr16	27480796	27480797	rs61739285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p12.1	NR	rs61739285-T	0.03348	1E-13		0.040128	[0.03-0.051] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
794	chr16	27480796	27480797	rs61739285	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16p12.1	NR	rs61739285-T	0.0344621	4E-11		0.0559936	[0.039-0.073] unit decrease	NR [19129689] (imputed)	N
795	chr16	27611178	27611179	rs530173326	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16p12.1	NR	rs530173326-?	NR	1E-5		1.32017	[0.74-1.9] unit increase	NR [13958389] (imputed)	N
795	chr16	27629660	27629661	rs4787980	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	16p12.1	KIAA0556	rs4787980-G	0.16	4E-6		5.76	NR unit decrease	Illumina [NR] (imputed)	N
796	chr16	27700403	27700404	rs9921758	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p12.1	NR	rs9921758-?	NR	4E-12				Affymetrix [NR]	N
796	chr16	27712552	27712553	rs964002	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16p12.1	KIAA0556	rs964002-?		3E-7				Illumina [4322238] (imputed)	N
796	chr16	27727778	27727779	rs12930749	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	16p12.1	KIAA0556	rs12930749-G	0.18	1E-6		5.8	NR unit decrease	Illumina [NR] (imputed)	N
796	chr16	27754444	27754445	rs12933955	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	16p12.1	KIAA0556	rs12933955-C	0.18	1E-6		5.8	NR unit decrease	Illumina [NR] (imputed)	N
797	chr16	27805246	27805247	rs118087764	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	16p12.1		rs118087764-C	NR	1E-8		0.268	[0.18-0.36] unit increase	Affymetrix [509886] (imputed)	N
797	chr16	27870287	27870288	rs13335959	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	16p12.1	NR	rs13335959-?	NR	9E-7	(Simpson's diversity index)	352407.0	[212787.58-492026.42] unit decrease	Illumina [5293637] (imputed)	N
798	chr16	28019194	28019195	rs205367	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	16p12.1	NR	rs205367-?	NR	8E-13		0.3	[0.2-0.4] unit decrease	Illumina [at least 830937] (imputed)	N
798	chr16	28043771	28043772	rs1548454	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Hemoglobin levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	16p12.1	GSG1L	rs1548454-G	0.61	4E-8		1.724	[1.11-2.34] unit decrease	Illumina [10307610] (imputed)	N
799	chr16	28052962	28052963	rs205391	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p12.1	GSG1L	rs205391-A	0.096	7E-6	(Height change )	0.03	[NR] cm/y increase	Illumina [899892]	N
799	chr16	28086175	28086176	rs205433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16p12.1	NR	rs205433-C	NR	6E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
799	chr16	28086453	28086454	rs205434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16p12.1	Intergenic	rs205434-A	0.3024	4E-8		0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
799	chr16	28093673	28093674	rs205438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs205438-T	0.707266	4E-11				Affymetrix, Illumina [24649327] (imputed)	N
799	chr16	28093673	28093674	rs205438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p12.1	NR	rs205438-T	0.712393	8E-13		0.015319	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
799	chr16	28100661	28100661	rs530565293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16p12.1		rs530565293-ACACACAC	NR	8E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
799	chr16	28108527	28108528	rs205356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p12.1		rs205356-A	NR	3E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
799	chr16	28131509	28131510	rs188192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p12.1	NR	rs188192-A	0.282146	3E-12		0.014601	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
799	chr16	28131509	28131510	rs188192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p12.1		rs188192-?	NR	1E-10				NR [~ 8900000] (imputed)	N
799	chr16	28133151	28133152	rs39998	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.1		rs39998-A	0.2967	5E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
799	chr16	28139076	28139077	rs33042	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16p12.1	XPO6	rs33042-G	0.753871	3E-13		0.0166637	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
799	chr16	28160180	28160181	rs4788046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p12.1	XPO6	rs4788046-A	0.291182	2E-13		0.01793263	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr16	28160180	28160181	rs4788046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs4788046-A	0.256618	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
799	chr16	28160180	28160181	rs4788046	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16p12.1	NR	rs4788046-A	0.289904	6E-14		0.015588	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
800	chr16	28211744	28211745	rs79490404	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	16p12.1	NR	rs79490404-?		7E-6		32.6871	[18.54-46.83] unit decrease	NR [NR] (imputed)	N
800	chr16	28241941	28241942	rs8055846	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16p12.1	XPO6, SBK1	rs8055846-G	0.71	1E-8		5.7	z-score increase	Affymetrix [4311822] (imputed)	N
800	chr16	28246667	28246668	rs9938394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p12.1	Intergenic	rs9938394-T	0.7332	3E-10	(MTAG)	0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
800	chr16	28246667	28246668	rs9938394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p12.1	Intergenic	rs9938394-T	0.7423	1E-11	(MTAG)	0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
800	chr16	28248399	28248400	rs11074901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16p12.1		rs11074901-A	NR	3E-9		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
800	chr16	28251276	28251277	rs8057071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p12.1		rs8057071-T	NR	1E-11		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
800	chr16	28257217	28257218	rs8061272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs8061272-A	0.285632	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
800	chr16	28274803	28274804	rs4255791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p12.1		rs4255791-A	0.3301	3E-8		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
800	chr16	28298417	28298418	rs112223196	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p12.1	ENSG00000246465	rs112223196-A	NR	3E-9		5.946	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
800	chr16	28298417	28298418	rs112223196	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	ENSG00000246465	rs112223196-A	NR	1E-10		0.023184212	[0.016-0.03] unit increase	Affymetrix [NR]	N
800	chr16	28301486	28301487	rs9939450	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16p12.1	XPO6, SBK1	rs9939450-?		6E-7	(EA)	0.1207661	[0.073-0.168] unit decrease	Illumina [13620258] (imputed)	N
800	chr16	28301486	28301487	rs9939450	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16p12.1	XPO6, SBK1	rs9939450-?		6E-7	(African American)	0.1207661	[0.073-0.168] unit decrease	Illumina [13620258] (imputed)	N
800	chr16	28306986	28306987	rs9889107	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p12.1	SBK1	rs9889107-?	NR	1E-6	(Hispanic)	1.2820514	[1.16-1.41]	Illumina [at least 5000000] (imputed)	N
800	chr16	28307939	28307940	rs33957528	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p12.1	NR	rs33957528-T	NR	2E-8		5.638	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
801	chr16	28318439	28318440	rs2650494	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	SBK1	rs2650494-A	NR	5E-8		0.016187277	[0.01-0.022] unit decrease	Affymetrix [NR]	N
801	chr16	28330789	28330790	rs2726040	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p12.1	SPNS1	rs2726040-C	0.5748	5E-6	(conditional)	0.0238	NR unit decrease	NR [NR]	N
801	chr16	28330789	28330790	rs2726040	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.1	SBK1	rs2726040-C	0.6205	4E-9	(EA)	0.0234	[0.016-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr16	28330789	28330790	rs2726040	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.1	SBK1	rs2726040-C	0.6205	2E-7	(EA, men)	0.0286	[0.018-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr16	28330968	28330968	rs141876325	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p12.1	SBK1	rs141876325-?	0.28	5E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
801	chr16	28330968	28330968	rs141876325	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p12.1	SBK1	rs141876325-?	NR	5E-11		1.063	[1.044-1.083]	Illumina [13757430] (imputed)	N
801	chr16	28333410	28333411	rs2650492	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p12.1	NR	rs2650492-G	NR	2E-12		0.021	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
801	chr16	28333410	28333411	rs2650492	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p12.1	NR	rs2650492-A	NR	2E-14		7.664	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p12.1	SBK1	rs2650492-A	0.3005	5E-7	(EA)	0.0246	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p12.1	SBK1	rs2650492-A	0.2944	3E-7		0.0246	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.1	SBK1	rs2650492-?	NR	4E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.1	SBK1	rs2650492-?	NR	2E-7	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.1	SBK1	rs2650492-A	0.3005	4E-8	(EA)	0.0243	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p12.1	SBK1	rs2650492-A	0.2944	3E-8		0.0238	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.1	SBK1	rs2650492-A	0.2933	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p12.1	SBK1	rs2650492-A	0.2933	3E-6		0.0215	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p12.1	SBK1	rs2650492-A	0.2933	3E-8		0.0225	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p12.1	NR	rs2650492-A	0.306781245179052	7E-15		0.024314765	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
801	chr16	28333410	28333411	rs2650492	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.1	SBK1	rs2650492-A	0.303	5E-6	(EA, women)	0.02	[0.011-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr16	28333410	28333411	rs2650492	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.1	SBK1	rs2650492-A	0.303	5E-6	(EA, men)	0.021	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr16	28333410	28333411	rs2650492	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.1	SBK1	rs2650492-A	0.303	2E-9	(EA)	0.021	[0.014-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr16	28333410	28333411	rs2650492	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p12.1	SBK1	rs2650492-A	0.3	1E-9		0.021	[0.014-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
801	chr16	28333410	28333411	rs2650492	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.1	SBK1	rs2650492-A	0.3034	2E-7	(EA, men)	0.0279	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr16	28333410	28333411	rs2650492	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.1	SBK1	rs2650492-A	0.3034	2E-6	(EA, women)	0.0239	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr16	28333410	28333411	rs2650492	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p12.1	SBK1	rs2650492-A	0.3034	2E-11	(EA)	0.0256	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
801	chr16	28336881	28336882	rs2726034	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16p12.1	SBK1, NPIPB6	rs2726034-T	0.68	1E-10		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
801	chr16	28336881	28336882	rs2726034	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	SBK1	rs2726034-T	NR	7E-11		0.020839687	[0.015-0.027] unit increase	Affymetrix [NR]	N
801	chr16	28338042	28338043	rs2726032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	16p12.1	NR	rs2726032-C	NR	3E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr16	28338042	28338043	rs2726032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p12.1	NR	rs2726032-C	NR	2E-14		0.0194	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
801	chr16	28338042	28338043	rs2726032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p12.1	NR	rs2726032-C	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
801	chr16	28338042	28338043	rs2726032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p12.1	NR	rs2726032-C	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
801	chr16	28338042	28338043	rs2726032	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p12.1	SBK1	rs2726032-T	NR	1E-10		6.468	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
801	chr16	28340944	28340945	rs12598357	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	SBK1	rs12598357-A	NR	2E-13		0.022868123	[0.017-0.029] unit increase	Affymetrix [NR]	N
801	chr16	28340944	28340945	rs12598357	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	16p12.1	SBK1	rs12598357-G	0.39	4E-9				Illumina [7347414] (imputed)	N
801	chr16	28347139	28347140	rs2726036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p12.1	NR	rs2726036-?	NR	2E-38				Affymetrix [~ 8270000] (imputed)	N
801	chr16	28347139	28347140	rs2726036	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16p12.1	NPIPB6	rs2726036-A	0.5991	3E-20		0.003	[0.0024-0.0036] unit increase	Affymetrix [15275733] (imputed)	N
801	chr16	28347139	28347140	rs2726036	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16p12.1	Intergenic	rs2726036-C	NR	8E-7		0.0285992	[0.017-0.04] unit decrease	Illumina [13520550] (imputed)	N
801	chr16	28349236	28349237	rs7206728	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	16p12.1	NR	rs7206728-C	0.583064	4E-9		0.995	[0.993, 0.996]	Affymetrix [39302896] (imputed)	N
801	chr16	28350058	28350059	rs3986805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16p12.1	Intergenic	rs3986805-A	0.626	1E-11		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
801	chr16	28379442	28379443	rs865719	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p12.1	NR	rs865719-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
801	chr16	28379442	28379443	rs865719	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	ENSG00000271623	rs865719-A	NR	2E-15		0.024867151	[0.019-0.031] unit increase	Affymetrix [NR]	N
801	chr16	28403470	28403471	rs555978476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16p12.1		rs555978476-A	NR	2E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
802	chr16	28489341	28489342	rs28374519	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p12.1	CLN3	rs28374519-A	NR	3E-10		6.293	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
802	chr16	28489341	28489342	rs28374519	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p12.1	CLN3	rs28374519-A	NR	2E-8		0.01736953	[0.011-0.023] unit increase	Affymetrix [NR]	N
802	chr16	28490516	28490517	rs151181	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	16p12.1	NPIPL1-CLN3	rs151181-T	NR	3E-19		0.027	[0.021-0.033] unit decrease	Illumina [2013566] (imputed)	N
802	chr16	28490516	28490517	rs151181	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	16p12.1	IL27, SH2B1, EIF3C, LAT, CD19	rs151181-G	0.386	2E-11		1.07	[1.03-1.12]	Affymetrix, Illumina [953241] (imputed)	N
802	chr16	28494473	28494474	rs34837	32758111	He M	2020-08-06	J Dent Res	Genome-wide Analyses Identify a Novel Risk Locus for Nonsyndromic Cleft Palate.	Nonsyndromic cleft palate	994 Han Chinese ancestry cases, 2,963 Han Chinese ancestry controls	1,095 Han Chinese ancestry cases, 6,352 Han Chinese ancestry controls	16p12.1	NR	rs34837-?	NR	3E-7		1.32	NR	Illumina [750091]	N
802	chr16	28494822	28494823	rs34836	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16p12.1	NR	rs34836-G	0.4388	2E-10		0.015736584	[0.011-0.021] unit decrease	Affymetrix [10613246] (imputed)	N
802	chr16	28494822	28494823	rs34836	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16p12.1	NR	rs34836-G	0.453	8E-13		0.013143449	[0.0095-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
802	chr16	28503527	28503528	rs187163584	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	16p12.1	CLN3	rs187163584-?	NR	2E-9		1.53755	[1.03-2.04] unit decrease	Affymetrix [up to 386296] (imputed)	N
802	chr16	28504180	28504181	rs27741	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p12.1	APOBR	rs27741-A	0.3622	4E-6	(conditional)	0.0239	NR unit decrease	NR [NR]	N
802	chr16	28505659	28505660	rs151234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p12.1	CLN3	rs151234-C	0.130793	1E-72		0.060575176	[0.054-0.067] unit increase	Affymetrix [93095623] (imputed)	N
802	chr16	28505659	28505660	rs151234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p12.1	CLN3	rs151234-C	0.1308	1E-73		0.060906183	[0.054-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
802	chr16	28505659	28505660	rs151234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs151234-C	0.13758	2E-111				Affymetrix, Illumina [24588908] (imputed)	N
802	chr16	28505659	28505660	rs151234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p12.1	NR	rs151234-C	0.136797	4E-110		0.061846	[0.056-0.067] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
802	chr16	28505659	28505660	rs151234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p12.1	NR	rs151234-G	0.865096	3E-108				Affymetrix, Illumina [17210439] (imputed)	N
802	chr16	28505659	28505660	rs151234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p12.1	NR	rs151234-G	0.866999	1E-110		0.063986	[0.058-0.07] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
802	chr16	28505659	28505660	rs151234	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	16p12.1	CLN3	rs151234-C	0.129	1E-10		1.235		Illumina [252970]	N
802	chr16	28505659	28505660	rs151234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16p12.1	CLN3	rs151234-C	0.1311	1E-10		0.03486707	[0.024-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
802	chr16	28505659	28505660	rs151234	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	16p12.1	IL27	rs151234-C	0.12	5E-11		1.19		Illumina [135870]	N
802	chr16	28506427	28506428	rs151233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p12.1		rs151233-T	NR	4E-77		0.0639	[0.057-0.071] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
802	chr16	28506427	28506428	rs151233	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16p12.1		rs151233-C	0.869	7E-47				Affymetrix [10369434] (imputed)	N
802	chr16	28506427	28506428	rs151233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p12.1	APOBR	rs151233-T	0.131601	6E-41		0.046453554	[0.04-0.053] unit increase	Affymetrix [93095623] (imputed)	N
802	chr16	28506427	28506428	rs151233	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p12.1	APOBR	rs151233-T	0.1327	3E-6	(conditional)	0.0385	NR unit increase	NR [NR]	N
802	chr16	28506427	28506428	rs151233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16p12.1	APOBR	rs151233-T	0.1309	2E-12		0.03820972	[0.028-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
802	chr16	28506427	28506428	rs151233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16p12.1	APOBR	rs151233-T	0.1308	4E-33		0.06481139	[0.054-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
802	chr16	28506427	28506428	rs151233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	16p12.1	APOBR	rs151233-T	0.1309	3E-37		0.06854762	[0.058-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
802	chr16	28507397	28507424	rs148114931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16p12.1		rs148114931-T	0.118532	2E-9		0.0255719	[0.017-0.034] unit increase	Illumina [13479924] (imputed)	N
802	chr16	28507397	28507424	rs148114931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	16p12.1		rs148114931-T	0.118615	4E-10		0.0314464	[0.022-0.041] unit increase	Illumina [13479178] (imputed)	N
802	chr16	28510536	28510537	rs40836	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p12.1	NR	rs40836-A	0.54	4E-7	(female)	0.1209	[0.074-0.168] unit increase	Illumina [11133794] (imputed)	N
802	chr16	28512370	28512371	rs181203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16p11.2		rs181203-C	NR	2E-17		0.0192	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
802	chr16	28512370	28512371	rs181203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p11.2	IL27	rs181203-C	0.334726	1E-10		0.015193776	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
802	chr16	28512370	28512371	rs181203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p11.2	NR	rs181203-A	0.668338	3E-14		0.015368	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
802	chr16	28513068	28513070	rs140934622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p11.2		rs140934622-A	NR	2E-23		0.0243	[0.02-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
802	chr16	28513068	28513070	rs140934622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p11.2	IL27	rs140934622-A	0.335259	1E-9		0.0136365	[0.0091-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
802	chr16	28513128	28513129	rs181205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p11.2	IL27	rs181205-C	0.346925	7E-30		0.026994625	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
802	chr16	28513402	28513403	rs181206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p11.2	IL27	rs181206-G	0.332626	2E-20		0.023156246	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
802	chr16	28513402	28513403	rs181206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p11.2		rs181206-?	NR	2E-15				NR [~ 8900000] (imputed)	N
802	chr16	28513529	28513530	rs181207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs181207-C	0.673639	6E-12				Affymetrix, Illumina [22063850] (imputed)	N
802	chr16	28514853	28514854	rs181209	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16p11.2	IL27	rs181209-T	0.327	9E-12	(Interleukin-27, IL27.EBI3.2829.19.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
802	chr16	28517708	28517709	rs26528	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p11.2	IL27	rs26528-?	NR	3E-29	(subset analysis)			Illumina [130052]	N
802	chr16	28517708	28517709	rs26528	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs26528-G	0.4576	1E-6	(EA)	1.06364	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
802	chr16	28517708	28517709	rs26528	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs26528-G	0.4576	1E-21	(EA)	1.1017768	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
802	chr16	28517708	28517709	rs26528	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs26528-G	0.4576	1E-22	(EA)	1.1273222	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
802	chr16	28517708	28517709	rs26528	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16p11.2	RABEP2, SULT1A1, SULT1A2, NUPR1, IL27, EIF3C	rs26528-C	0.451	1E-21		1.099	[1.067-1.13]	Affymetrix, Illumina [1230000] (imputed)	N
802	chr16	28520325	28520326	rs111857492	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p11.2	NR	rs111857492-?	NR	7E-7	(female)	0.1228	[0.074-0.171] unit decrease	Illumina [11133794] (imputed)	N
802	chr16	28523143	28523144	rs56354901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p11.2	IL27	rs56354901-C	0.340748	1E-9		0.014231844	[0.0096-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
802	chr16	28523143	28523144	rs56354901	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	16p11.2	NPIPL1, IL27	rs56354901-?	NR	2E-6		1.09	[1.05-1.13]	NR [7424691] (imputed)	N
802	chr16	28523143	28523144	rs56354901	30500874	Kakuta Y	2018-11-29	J Crohns Colitis	A genome-wide association study identifying RAP1A as a novel susceptibility gene for Crohn's disease in Japanese individuals.	Crohn's disease	713 Japanese ancestry cases, 2,083 Japanese ancestry controls	770 Japanese ancestry cases, 852 Japanese ancestry controls	16p11.2	IL27	rs56354901-?	0.122	6E-7		1.59	NR	NR [4335144] (imputed)	N
802	chr16	28523143	28523144	rs56354901	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs56354901-T	NR	3E-14		7.602	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
802	chr16	28524611	28524612	rs240707	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	16p11.2	SBK1, NPIPB6, EIF3CL, NPIPB7, CLN3, APOBR, IL27, NUPR1, CCDC101, SULT1A2, SULT1A1, NPIPB8, EIF3C, NPIPB9, ATXN2L, TUFM, SH2B1, ATP2A1	rs240707-?	NR	3E-8		0.0135225	[0.0087-0.0183] unit increase	Affymetrix [25921788] (imputed)	N
802	chr16	28524611	28524612	rs240707	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	IL27	rs240707-C	NR	1E-14		0.023754021	[0.018-0.03] unit increase	Affymetrix [NR]	N
802	chr16	28527220	28527221	rs62034318	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	IL27	rs62034318-T	NR	3E-11		0.021575207	[0.015-0.028] unit decrease	Affymetrix [NR]	N
802	chr16	28527325	28527326	rs79046494	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	IL27	rs79046494-A	NR	3E-9		5.946	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
802	chr16	28528622	28528623	rs153103	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs153103-T	NR	5E-9		5.846	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
802	chr16	28528780	28528781	rs28449958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16p11.2	IL27, NUPR1, TUFM, NPIPB6, EIF3CL, NPIPB7, CLN3, APOBR, SULT1A2, SULT1A1, NPIPB8, NPIPB9, SH2B1, ATP2A1, RABEP2, CD19, CCDC101, EIF3C, ATXN2L	rs28449958-?		2E-12				Illumina [9725440] (imputed)	N
802	chr16	28528780	28528781	rs28449958	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	16p11.2	IL27, NUPR1, TUFM, NPIPB6, EIF3CL, NPIPB7, CLN3, APOBR, SULT1A2, SULT1A1, NPIPB8, NPIPB9, SH2B1, ATP2A1, RABEP2, CD19, CCDC101, EIF3C, ATXN2L	rs28449958-?		3E-10				Illumina [9560910] (imputed)	N
802	chr16	28531286	28531287	rs4787458	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	16p11.2		rs4787458-A	NR	9E-7		0.01	[0.0061-0.0139] unit decrease	NR [7831927]	N
802	chr16	28531352	28531353	rs240702	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	16p11.2	IL27	rs240702-T	0.4203	8E-13		0.014711447	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
802	chr16	28532187	28532188	rs62034319	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p11.2		rs62034319-T	0.5822	2E-28	(conditional-joint)	0.0157	[0.013-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
802	chr16	28533432	28533432	rs67211426	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	16p11.2	NR	rs67211426-?		8E-7		1.88	[1.46-2.42]	Illumina [539473] (imputed)	N
802	chr16	28533630	28533631	rs113414359	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs113414359-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
802	chr16	28538335	28538336	rs231972	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	16p11.2		rs231972-A	0.875	8E-12				Affymetrix [10369434] (imputed)	N
802	chr16	28538639	28538640	rs62034325	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p11.2	NR	rs62034325-A	NR	1E-15		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
802	chr16	28538639	28538640	rs62034325	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p11.2	IL27, NUPR1	rs62034325-G	0.127	4E-10	(Japanese)	0.032	[0.022-0.042] unit increase	Illumina [6108953] (imputed)	N
802	chr16	28539378	28539378	rs199618702	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	16p11.2	NR	rs199618702-?	NR	9E-6	(female)	0.1135	[0.064-0.163] unit increase	Illumina [11133794] (imputed)	N
802	chr16	28539398	28539402	rs143626010	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16p11.2	NPIPL1	rs143626010-?	0.611	5E-9		0.0327988	[0.022-0.044] unit increase	Illumina [13520550] (imputed)	N
802	chr16	28539847	28539848	rs4788084	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	16p11.2	NUPR1	rs4788084-T	0.418	2E-8		0.0134	[0.0087-0.0181] unit decrease	Illumina [~ 250000] (imputed)	N
802	chr16	28539847	28539848	rs4788084	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	16p11.2	IL27	rs4788084-C	NR	1E-8		1.15	[NR]	Affymetrix, Illumina [NR]	N
802	chr16	28539847	28539848	rs4788084	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	16p11.2	IL27	rs4788084-G	0.42	3E-13		1.09	[1.02-1.16]	Affymetrix, Illumina [841622] (imputed)	N
802	chr16	28542171	28542172	rs231977	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p11.2	NUPR1	rs231977-T	0.45	1E-12	(X - 12714)	0.213	[0.15-0.27] unit decrease	Illumina [7750367] (imputed)	N
802	chr16	28543380	28543381	rs12446550	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	16p11.2	NUPR1, APOBR	rs12446550-A	0.419034	5E-8		0.016794	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
802	chr16	28543380	28543381	rs12446550	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	NUPR1	rs12446550-A	NR	2E-19		0.026792884	[0.021-0.033] unit decrease	Affymetrix [NR]	N
802	chr16	28545586	28545587	rs231976	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p11.2	NUPR1	rs231976-G	0.45	2E-19	(3-hydroxyindolin-2-one sulfate)	0.342	[0.27-0.42] unit increase	Illumina [7750367] (imputed)	N
802	chr16	28549822	28549823	rs151226	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	16p11.2	NUPR1	rs151226-C	0.4552	1E-8		0.011513738	[0.0075-0.0155] unit decrease	Affymetrix [up to 18485882] (imputed)	N
802	chr16	28555399	28555400	rs4787457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p11.2		rs4787457-A	0.6339	1E-28		0.0162	[0.013-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
802	chr16	28555399	28555400	rs4787457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p11.2	Intergenic	rs4787457-A	0.6339	4E-33	(MTAG)	0.0163	[0.014-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
802	chr16	28555893	28555894	rs75227850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p11.2	NR	rs75227850-T	NR	2E-9		0.0383	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
802	chr16	28565666	28565667	rs7191618	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p11.2		rs7191618-G	0.35	3E-22		9.71	z score increase	Affymetrix [9061022] (imputed)	N
802	chr16	28565666	28565667	rs7191618	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16p11.2	NR	rs7191618-G	0.4117	1E-17				NR [9056863] (imputed)	N
802	chr16	28567003	28567004	rs231970	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p11.2	IL27, SULT1A1	rs231970-A	0.8827	5E-6	(conditional)	0.035	NR unit decrease	NR [NR]	N
803	chr16	28574614	28574615	rs480400	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	CCDC101	rs480400-A	NR	8E-15		0.022714678	[0.017-0.028] unit increase	Affymetrix [NR]	N
803	chr16	28576016	28576017	rs2607006	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16p11.2	NR	rs2607006-T		1E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
803	chr16	28577930	28577931	rs497523	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16p11.2	GSG1L, XPO6, NUPR1, NPIPL1, CCDC101	rs497523-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
803	chr16	28577930	28577931	rs497523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	CCDC101	rs497523-T	NR	4E-8		5.493	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28579915	28579916	rs150072875	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p11.2	CCDC101, NPIPL1	rs150072875-GT	0.590862	1E-45	(propyl 4-hydroxybenzoate sulfate)	0.319	[0.28-0.36] unit increase	Illumina [13039987] (imputed)	N
803	chr16	28579915	28579916	rs150072875	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16p11.2	CCDC101, NPIPL1	rs150072875-GT	0.590862	1E-45	(propyl 4-hydroxybenzoate sulfate)	0.319	[0.28-0.36] unit increase	Illumina [13039987] (imputed)	N
803	chr16	28579915	28579916	rs150072875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p11.2	CCDC101	rs150072875-G	0.467673	3E-12		0.016010769	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
803	chr16	28579917	28579918	rs1223326765	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p11.2	NR	rs1223326765-T	0.493	9E-9	(SULT1A1)	0.4239	NR unit increase	Illumina [1671387] (imputed)	N
803	chr16	28580332	28580333	rs151232	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16p11.2	CCDC101	rs151232-T	0.45	3E-31	(furaneol sulfate)	0.364	[0.3-0.42] unit increase	Illumina [7750367] (imputed)	N
803	chr16	28582141	28582142	rs193628	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs193628-T	NR	2E-14		7.65	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
803	chr16	28582848	28582849	rs151231	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	CCDC101	rs151231-A	NR	3E-13		7.307	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28586126	28586127	rs7193402	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	16p11.2		rs7193402-?	NR	3E-10				NR [~ 8900000] (imputed)	N
803	chr16	28590029	28590030	rs7190771	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16p11.2	CCDC101	rs7190771-A	0.3778	6E-11		0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
803	chr16	28593346	28593347	rs17707300	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	16p11.2	CCDC101, IL27	rs17707300-C	0.37	7E-10		1.1	[1.06-1.13]	Affymetrix, Illumina [NR] (imputed)	N
803	chr16	28594548	28594549	rs4788073	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p11.2	NR	rs4788073-G	0.3415	2E-10	(SULT1A1)	0.5074	NR unit decrease	Illumina [1671387] (imputed)	N
803	chr16	28595809	28595810	rs75539558	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p11.2	SULT1A1	rs75539558-C	0.6633	2E-6	(conditional)	0.025	NR unit increase	NR [NR]	N
803	chr16	28604685	28604686	rs3743963	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16p11.2		rs3743963-A	0.461	2E-12		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
803	chr16	28617307	28617308	rs9282864	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	16p11.2	SULT1A1, SULT1A2	rs9282864-A	0.6723	5E-10		1.0638298	[1.04-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
803	chr16	28618707	28618708	rs11648192	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p11.2	NR	rs11648192-C	0.564699	3E-16		0.016648	[0.013-0.021] unit increase	NR [NR]	N
803	chr16	28618707	28618708	rs11648192	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	SULT1A1	rs11648192-T	NR	1E-13		7.444	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28618707	28618708	rs11648192	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	SULT1A1	rs11648192-T	NR	1E-10		0.019943852	[0.014-0.026] unit increase	Affymetrix [NR]	N
803	chr16	28619131	28619132	rs2925630	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	16p11.2	NR	rs2925630-T	NR	4E-6	(EA)	0.0935	[0.054-0.133] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
803	chr16	28619919	28619920	rs1126446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p11.2	NR	rs1126446-G	0.385083	3E-36		0.025593	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
803	chr16	28620571	28620572	rs750155	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	SULT1A1	rs750155-T	NR	6E-11		6.551	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28620571	28620572	rs750155	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	SULT1A1	rs750155-T	NR	3E-11		0.020399148	[0.014-0.026] unit decrease	Affymetrix [NR]	N
803	chr16	28620799	28620800	rs3760091	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	16p11.2	SULT1A1	rs3760091-C	0.602317	3E-8		1.12	[1.07-1.16]	Illumina [~ 41266535] (imputed)	N
803	chr16	28620799	28620800	rs3760091	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16p11.2	SULT1A1	rs3760091-C	0.6039	4E-9		0.015456795	[0.01-0.021] unit decrease	Affymetrix [~ 11515000] (imputed)	N
803	chr16	28622153	28622154	rs9922110	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	SULT1A1	rs9922110-C	NR	1E-8		0.017967228	[0.012-0.024] unit decrease	Affymetrix [NR]	N
803	chr16	28622992	28622993	rs2925635	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	SULT1A1	rs2925635-A	NR	2E-8		5.602	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28632020	28632021	rs2411453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p11.2	SULT1A1	rs2411453-T	NR	2E-10		0.0184596	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
803	chr16	28632020	28632021	rs2411453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16p11.2		rs2411453-?	NR	1E-16				NR [~ 8900000] (imputed)	N
803	chr16	28632020	28632021	rs2411453	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p11.2	NR	rs2411453-?	NR	4E-17		0.18142	[0.14-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
803	chr16	28632020	28632021	rs2411453	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p11.2	NR	rs2411453-?	NR	1E-16	(male)	0.21963	[0.17-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
803	chr16	28634424	28634425	rs56148728	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs56148728-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
803	chr16	28634892	28634893	rs116938877	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs116938877-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
803	chr16	28638360	28638361	rs3987606	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	16p11.2		rs3987606-?	NR	2E-9				Affymetrix [NR] (imputed)	N
803	chr16	28644458	28644459	rs12446008	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16p11.2	Intergenic	rs12446008-T	NR	3E-7		0.0337198	[0.021-0.047] unit decrease	Illumina [13520550] (imputed)	N
803	chr16	28644662	28644663	rs7193413	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	NPIPB8	rs7193413-A	NR	1E-10		6.473	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28644662	28644663	rs7193413	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	NPIPB8	rs7193413-A	NR	1E-9		0.020475354	[0.014-0.027] unit increase	Affymetrix [NR]	N
803	chr16	28645126	28645127	rs111820348	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	16p11.2	TBC1D5	rs111820348-?		2E-10				NR [7428630] (imputed)	N
803	chr16	28645126	28645127	rs111820348	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16p11.2	ATP1B3, TFDP2	rs111820348-?		6E-10				NR [7428630] (imputed)	N
803	chr16	28645126	28645127	rs111820348	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16p11.2	NR	rs111820348-?	NR	2E-8	(left caudate)			NR [9227495] (imputed)	N
803	chr16	28645126	28645127	rs111820348	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs111820348-?	NR	6E-9		0.0731	[0.048-0.098] unit increase	Illumina [at least 560000] (imputed)	N
803	chr16	28649066	28649067	rs62035126	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	16p11.2		rs62035126-?	NR	2E-9				Affymetrix [NR] (imputed)	N
803	chr16	28651731	28651732	rs72793807	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	NPIPB8	rs72793807-T	NR	5E-9		5.863	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
803	chr16	28656259	28656260	rs200862095	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	16p11.2		rs200862095-?	NR	3E-10				Affymetrix [NR] (imputed)	N
803	chr16	28656465	28656466	rs78343384	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	16p11.2		rs78343384-?	NR	4E-10				Affymetrix [NR] (imputed)	N
803	chr16	28702942	28702943	rs202014106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p11.2		rs202014106-T	NR	2E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
804	chr16	28743871	28743872	rs200162716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	16p11.2	NR	rs200162716-G	0.52634	2E-10		0.030742	[0.021-0.04] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
804	chr16	28754683	28754684	rs378421	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16p11.2	NR	rs378421-A	0.404	4E-15		0.0121791	[0.0091-0.0152] unit decrease	NR [~ 9732723] (imputed)	N
804	chr16	28754683	28754684	rs378421	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16p11.2	NR	rs378421-A	0.404	5E-14		0.011205474	[0.0083-0.0141] unit decrease	NR [~ 10000000] (imputed)	N
804	chr16	28818036	28818037	rs437564	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 285)	19,670 European ancestry individuals	NA	16p11.2		rs437564-?	NR	5E-9				NR [9705931] (imputed)	N
804	chr16	28825604	28825605	rs2008514	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs2008514-A	NR	1E-24		10.245	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
804	chr16	28825604	28825605	rs2008514	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p11.2	ATXN2L	rs2008514-A	0.3937	1E-8	(men)	0.0346	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
804	chr16	28825604	28825605	rs2008514	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	ATXN2L	rs2008514-?	NR	8E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
804	chr16	28825604	28825605	rs2008514	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	ATXN2L	rs2008514-A	0.3983	2E-9	(EA, men)	0.0333	[0.023-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
804	chr16	28825604	28825605	rs2008514	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	ATXN2L	rs2008514-A	0.3886	2E-17		0.0307	[0.024-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
804	chr16	28825604	28825605	rs2008514	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	ATXN2L	rs2008514-A	0.3886	1E-10	(men)	0.0339	[0.024-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
804	chr16	28825865	28825866	rs1987471	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	16p11.2	NR	rs1987471-T	0.6314	4E-9		5.878	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
804	chr16	28825865	28825866	rs1987471	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16p11.2	RP11-1348G14.1, RP11-1348G14.4	rs1987471-T	0.5981	4E-6		0.0377	[0.022-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
804	chr16	28825952	28825953	rs56186137	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	16p11.2		rs56186137-G	0.4	2E-11		0.013	nmol/L decrease	NR [NR] (imputed)	N
804	chr16	28825952	28825953	rs56186137	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p11.2		rs56186137-G	0.4	7E-46				NR [NR] (imputed)	N
804	chr16	28825952	28825953	rs56186137	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	16p11.2		rs56186137-G	0.4	4E-7		0.01	mmol/L decrease	NR [NR] (imputed)	N
804	chr16	28825952	28825953	rs56186137	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p11.2		rs56186137-G	0.4	3E-50		0.023	% increase	NR [NR] (imputed)	N
804	chr16	28825952	28825953	rs56186137	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	16p11.2		rs56186137-G	0.4	2E-7		0.01	U/L increase	NR [NR] (imputed)	N
804	chr16	28826048	28826049	rs28472312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16p11.2		rs28472312-?	NR	2E-12				NR [~ 8900000] (imputed)	N
804	chr16	28826048	28826049	rs28472312	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	ENSG00000251417	rs28472312-T	NR	3E-11		0.022222726	[0.016-0.029] unit decrease	Affymetrix [NR]	N
804	chr16	28828833	28828834	rs62036618	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	16p11.2	ATXN2L	rs62036618-A	0.6127	1E-13		0.9752495	[NR]	Illumina [12493444] (imputed)	N
804	chr16	28829227	28829228	rs28888764	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs28888764-A	NR	1E-18		8.799	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
805	chr16	28837514	28837515	rs8049439	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	16p11.2		rs8049439-T	0.6549	1E-8		42.41152	z score increase	NR [6814003]	N
805	chr16	28837514	28837515	rs8049439	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16p11.2		rs8049439-?	NR	6E-14				NR [7857346] (imputed)	N
805	chr16	28837514	28837515	rs8049439	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	ATXN2L	rs8049439-T	NR	1E-19		0.02696967	[0.021-0.033] unit increase	Affymetrix [NR]	N
805	chr16	28837514	28837515	rs8049439	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16p11.2	ATXN2L	rs8049439-T	0.6034	2E-7		0.0339	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
805	chr16	28837514	28837515	rs8049439	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	16p11.2	NR	rs8049439-T	0.5914	7E-11		0.014752662	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
805	chr16	28837514	28837515	rs8049439	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	16p11.2	ATXN2L, TUFM, SH2B1, EIF3CL, NFATC2IP, NUPR1, SPNS1, LAT, SULT1A1, SULT1A2, CCDC101	rs8049439-T	0.595	1E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
805	chr16	28837514	28837515	rs8049439	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	16p11.2	ATXN2L	rs8049439-T	0.581	1E-7	(Edu Years)	0.086	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
805	chr16	28837514	28837515	rs8049439	19915574	Imielinski M	2009-11-15	Nat Genet	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	16p11.2	CCDC101, CLN3, SULT1A1, SULT1A2, NUPR1, IL27, EIF3C	rs8049439-G	0.37	2E-9		1.14	[1.00-1.30]	Illumina [~ 500000]	N
805	chr16	28837905	28837906	rs8062405	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16p11.2		rs8062405-G	0.33	2E-11		6.74	z score increase	Affymetrix [9061022] (imputed)	N
805	chr16	28837905	28837906	rs8062405	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	16p11.2	ATXN2L	rs8062405-?	NR	4E-14		7.557	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
805	chr16	28837905	28837906	rs8062405	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	16p11.2	ATXN2L	rs8062405-?	NR	2E-9		6.035	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
805	chr16	28837905	28837906	rs8062405	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p11.2	ATXN2L	rs8062405-A	0.6074	2E-8		0.0365	[0.024-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	9E-15	(204 ms)	0.0449687	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	9E-13	(236 ms)	0.041954	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-14	(228 ms)	0.0439534	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-14	(226 ms)	0.0439449	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-13	(238 ms)	0.0423405	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-13	(184 ms)	0.0419757	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-12	(240 ms)	0.0404825	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	7E-11	(242 ms)	0.0388697	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-9	(248 ms)	0.0353526	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-8	(250 ms)	0.0331749	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-15	(222 ms)	0.0464427	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-15	(216 ms)	0.0455425	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-14	(198 ms)	0.0434217	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-12	(234 ms)	0.0413714	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	5E-12	(174 ms)	0.0405975	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-8	(142 ms)	0.032853	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-15	(218 ms)	0.0459589	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-14	(230 ms)	0.0445287	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-11	(168 ms)	0.0386119	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-11	(158 ms)	0.0385258	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-11	(156 ms)	0.0391148	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	4E-10	(244 ms)	0.038202	[0.026-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-8	(138 ms)	0.0323456	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-15	(220 ms)	0.0461772	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-15	(212 ms)	0.045984	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-14	(210 ms)	0.0447017	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-14	(200 ms)	0.0440658	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-13	(232 ms)	0.0428061	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-12	(162 ms)	0.0406047	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-11	(172 ms)	0.0390122	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-11	(170 ms)	0.0390473	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	3E-11	(164 ms)	0.0384449	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-8	(116 ms)	0.0337479	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-15	(214 ms)	0.046042	[0.034-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-14	(208 ms)	0.0445895	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-14	(206 ms)	0.0448135	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-14	(190 ms)	0.0441845	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-14	(178 ms)	0.0444564	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-13	(196 ms)	0.0425197	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-13	(194 ms)	0.0424501	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-13	(176 ms)	0.0427575	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	2E-12	(182 ms)	0.0403211	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-9	(246 ms)	0.0372267	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-14	(224 ms)	0.0453555	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-14	(202 ms)	0.0445445	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-14	(188 ms)	0.044976	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-14	(186 ms)	0.0448744	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-13	(192 ms)	0.043164	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-13	(180 ms)	0.0428721	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-11	(160 ms)	0.0394594	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28838072	28838073	rs12448482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	ATXN2L	rs12448482-A	0.332324	1E-10	(166 ms)	0.0371245	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
805	chr16	28839929	28839930	rs62036624	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	ATXN2L	rs62036624-T	0.3887	4E-8		0.0384	[0.025-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
805	chr16	28839929	28839930	rs62036624	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	ATXN2L	rs62036624-T	0.3887	4E-8		0.0384	[0.025-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
805	chr16	28840380	28840381	rs72793812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p11.2		rs72793812-G	NR	8E-18		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
805	chr16	28840380	28840381	rs72793812	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p11.2	Intergenic	rs72793812-A	0.6016	8E-35	(MTAG)	0.0288	[0.024-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
805	chr16	28847245	28847246	rs12928404	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16p11.2	SBK1, NPIPB6, EIF3CL, NPIPB7, CLN3, APOBR, IL27, NUPR1, CCDC101, SULT1A2, SULT1A1, NPIPB8, EIF3C, NPIPB9, ATXN2L, TUFM, SH2B1, ATP2A1, RABEP2, CD19	rs12928404-?		3E-9				NR [7428630] (imputed)	N
805	chr16	28847245	28847246	rs12928404	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	16p11.2	ATXN2L	rs12928404-C	0.41	1E-25		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
805	chr16	28847245	28847246	rs12928404	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	16p11.2	APOBR, ATP2A1, ATXN2L, CCDC101, CLN3, EIF3C, IL27, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs12928404-T	0.663	2E-8		5.59	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
805	chr16	28847245	28847246	rs12928404	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	16p11.2	ATXN2L	rs12928404-?	NR	6E-10		0.03293	[0.022-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
805	chr16	28847245	28847246	rs12928404	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	16p11.2	ATXN2L, NPIPB9, TUFM, SH2B1, ATP2A1	rs12928404-T	0.5885	4E-8	(Adults)	5.478	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
805	chr16	28847245	28847246	rs12928404	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	16p11.2	ATXN2L, NPIPB9, TUFM, SH2B1, ATP2A1	rs12928404-T	0.5885	1E-8		5.706	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
805	chr16	28847245	28847246	rs12928404	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	16p11.2	ATXN2L	rs12928404-C	0.38	6E-7				Illumina [7347414] (imputed)	N
805	chr16	28848667	28848668	rs12325113	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p11.2	NR	rs12325113-T	NR	4E-29		0.029	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-C	0.39649999999999996	2E-13	(EA)	0.0311	[0.023-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-C	0.39449999999999996	2E-7	(EA,women)	0.0282	[0.018-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-?	NR	9E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-?	NR	2E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-C	0.39649999999999996	3E-8	(EA, women)	0.027	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28848667	28848668	rs12325113	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1, ATXN2L	rs12325113-C	0.39649999999999996	2E-15	(EA)	0.0301	[0.023-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28850370	28850371	rs62036658	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p11.2		rs62036658-G	0.34	2E-21		9.52	z score increase	Affymetrix [9061022] (imputed)	N
805	chr16	28850370	28850371	rs62036658	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p11.2	NR	rs62036658-G	0.4003	5E-11				NR [9056863] (imputed)	N
805	chr16	28850370	28850371	rs62036658	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	16p11.2	NR	rs62036658-T	0.595352	3E-10		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
805	chr16	28855726	28855727	rs4788099	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16p11.2	TUFM, SH2B1	rs4788099-G	0.4	8E-8	(European)	0.026	[0.016-0.036] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
805	chr16	28855726	28855727	rs4788099	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16p11.2	TUFM, SH2B1	rs4788099-G	0.4	5E-6	(European men)	0.031	[0.017-0.045] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
805	chr16	28855726	28855727	rs4788099	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16p11.2	TUFM, ATXN2L, SBK1, SULT1A2	rs4788099-G	0.38	7E-7	(men)	0.032	[0.019-0.045] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
805	chr16	28855726	28855727	rs4788099	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16p11.2	TUFM, ATXN2L, SBK1, SULT1A2	rs4788099-G	0.38	1E-8		0.027	[0.017-0.037] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
805	chr16	28857644	28857645	rs7187776	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	16p11.2	TUFM	rs7187776-A	NR	2E-13		0.00941922	[0.0069-0.0119] unit increase	Affymetrix [10061374] (imputed)	N
805	chr16	28857644	28857645	rs7187776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs7187776-G	0.36665	1E-35				Affymetrix, Illumina [24332387] (imputed)	N
805	chr16	28857644	28857645	rs7187776	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16p11.2	TUFM	rs7187776-A	0.6208	1E-11		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
805	chr16	28857644	28857645	rs7187776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p11.2		rs7187776-?	NR	3E-18				NR [~ 8900000] (imputed)	N
805	chr16	28857644	28857645	rs7187776	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	TUFM	rs7187776-A	0.5907	7E-8	(EA, women)	0.0247	[0.016-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28857644	28857645	rs7187776	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	TUFM	rs7187776-A	0.5907	4E-8	(EA)	0.0197	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28860182	28860183	rs113079736	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	16p11.2	TUFM	rs113079736-A	0.4018	3E-11		0.015113383	[0.011-0.02] unit decrease	Affymetrix [11514936] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	2E-12		0.01612	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	1E-11	(females)	0.01902	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	3E-6	(males)	0.01927	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	2E-24		0.02513	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	1E-21	(females)	0.0301	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	4E-9	(females)	0.02257	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	2E-8	(males)	0.01526	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28862780	28862781	rs369515117	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	APOB48R, ATP2A1, ATXN2L, CCDC101, CD19, CLN3, EIF3C-1, EIF3C-2, EIF3CL-1, EIF3CL-2, IL27, LOC390688-1, LOC390688-2, LOC440350-1, LOC440350-2, LOC440350-3, LOC440350-4, NUPR1, RABEP2, SH2B1, SULT1A1, SULT1A2, TUFM	rs369515117-C	0.42017	2E-12		0.01945	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
805	chr16	28863516	28863517	rs80275162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p11.2	SH2B1	rs80275162-A	0.395276	6E-24		0.022820443	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr16	28863900	28863901	rs192613545	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	16p11.2	SH2B1	rs192613545-T	0.078457	3E-8		2.338445	[1.734515-3.152654]	Affymetrix, Illumina [NR] (imputed)	N
805	chr16	28863964	28863965	rs371918919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p11.2	SH2B1	rs371918919-T	0.358373	2E-34		0.0289471	[0.025-0.033] unit increase	Affymetrix [93095623] (imputed)	N
805	chr16	28863964	28863965	rs371918919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p11.2	SH2B1	rs371918919-T	0.358401	4E-21		0.021904184	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
805	chr16	28863964	28863965	rs371918919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs371918919-T	0.306563	9E-22				Affymetrix, Illumina [20825802] (imputed)	N
805	chr16	28863964	28863965	rs371918919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16p11.2	NR	rs371918919-T	0.358197	6E-25		0.02195	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
805	chr16	28864448	28864449	rs56226746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p11.2	SH2B1	rs56226746-A	0.423411	2E-17		0.020023847	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
805	chr16	28864470	28864471	rs56163509	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs56163509-?	NR	1E-8		0.0519	[0.034-0.07] unit increase	Illumina [at least 560000] (imputed)	N
805	chr16	28864470	28864471	rs56163509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p11.2	SH2B1	rs56163509-G	0.4101	6E-11		0.0238384	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
805	chr16	28864549	28864549	rs374129955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16p11.2		rs374129955-AAT	NR	3E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
805	chr16	28865041	28865042	rs62037363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p11.2		rs62037363-C	NR	1E-42		0.0253	[0.022-0.029] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
805	chr16	28865041	28865042	rs62037363	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	SH2B1	rs62037363-T	NR	7E-19		8.88	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
805	chr16	28865041	28865042	rs62037363	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs62037363-?	NR	6E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
805	chr16	28868694	28868695	rs62037364	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16p11.2	NR	rs62037364-?	NR	7E-9	(left caudate)			NR [9227495] (imputed)	N
805	chr16	28868694	28868695	rs62037364	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16p11.2	SH2B1	rs62037364-A	0.4076	2E-26		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
805	chr16	28868961	28868962	rs62037365	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p11.2	SH2B1	rs62037365-C	0.601978	1E-21		0.0136515	[0.011-0.016] unit decrease	Affymetrix [12370749]	N
805	chr16	28870961	28870962	rs12446589	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16p11.2	IL27	rs12446589-A	0.3998	2E-6		0.0113	[0.0066-0.016] unit decrease	Affymetrix [19819130] (imputed)	N
805	chr16	28870961	28870962	rs12446589	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16p11.2	IL27	rs12446589-A	0.3998	3E-8		0.0131	[0.0084-0.0178] unit decrease	Affymetrix [19819130] (imputed)	N
805	chr16	28870961	28870962	rs12446589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16p11.2	Intergenic	rs12446589-A	0.3774	2E-36	(MTAG)	0.0232	[0.02-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
805	chr16	28870961	28870962	rs12446589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p11.2	Intergenic	rs12446589-G	0.6226	3E-27		0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
805	chr16	28871190	28871191	rs12448902	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16p11.2	NR	rs12448902-C	0.310139	1E-18		0.060124524	[0.047-0.074] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
805	chr16	28871190	28871191	rs12448902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16p11.2	Intergenic	rs12448902-C	0.6061	5E-19		0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
805	chr16	28871190	28871191	rs12448902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p11.2	SH2B1	rs12448902-G	0.3968	1E-10		0.02383019	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
805	chr16	28871965	28871966	rs7201929	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	16p11.2	SH2B1	rs7201929-T	0.72	5E-7		1.2	[0.73-1.67] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
805	chr16	28873397	28873398	rs4788102	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p11.2	SH2B1	rs4788102-A	0.3865	8E-15		0.0318	[0.024-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28873397	28873398	rs4788102	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16p11.2	SH2B1	rs4788102-A	0.3817	1E-9	(women)	0.031	[0.021-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28873397	28873398	rs4788102	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1	rs4788102-?	NR	2E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28873397	28873398	rs4788102	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1	rs4788102-?	NR	1E-16				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28873397	28873398	rs4788102	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16p11.2	SH2B1	rs4788102-A	0.3865	9E-10	(women)	0.0283	[0.019-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr16	28875203	28875204	rs11864750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p11.2	Intergenic	rs11864750-A	0.62	7E-37	(MTAG)	0.0216	[0.018-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
805	chr16	28881000	28881001	rs11150623	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16p11.2	SH2B1	rs11150623-T	0.641	3E-11		0.0082	[0.0058-0.0106] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
805	chr16	28881201	28881202	rs8055982	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	16p11.2	SH2B1	rs8055982-?	NR	1E-9		6.063	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
805	chr16	28883240	28883241	rs7498665	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16p11.2	NPM1, FGF18	rs7498665-?		9E-14				NR [7428630] (imputed)	N
805	chr16	28883240	28883241	rs7498665	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p11.2	SH2B1	rs7498665-A	0.600456	6E-35		0.0172834	[0.015-0.02] unit decrease	Affymetrix [12370749]	N
805	chr16	28883240	28883241	rs7498665	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs7498665-?	NR	4E-40				Affymetrix [~ 8270000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p11.2	NR	rs7498665-G	0.4033	2E-26		0.026913788	[0.022-0.032] unit increase	Affymetrix [10549349] (imputed)	N
805	chr16	28883240	28883241	rs7498665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p11.2		rs7498665-?	NR	1E-40				NR [~ 8900000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p11.2	NA	rs7498665-A	0.6175	1E-22		0.0168	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16p11.2	NR	rs7498665-A	0.6175	1E-22		0.0168	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p11.2	NA	rs7498665-A	0.6179	1E-66		0.0285	[0.025-0.032] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p11.2	NA	rs7498665-A	0.6179	1E-66		0.0285	[0.025-0.032] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	SH2B1	rs7498665-A	0.5971	5E-15	(EA, men)	0.0374	[0.028-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28883240	28883241	rs7498665	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	SH2B1	rs7498665-A	0.5971	3E-12	(EA, women)	0.0313	[0.022-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28883240	28883241	rs7498665	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	SH2B1	rs7498665-A	0.5971	1E-22	(EA)	0.0338	[0.027-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28883240	28883241	rs7498665	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p11.2	SH2B1	rs7498665-G	0.4	5E-12	(Overweight)	1.05	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p11.2	SH2B1	rs7498665-G	0.4	3E-13	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
805	chr16	28883240	28883241	rs7498665	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	16p11.2	SH2B1	rs7498665-G	0.41	5E-11		0.15	[0.08-0.21] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
805	chr16	28883240	28883241	rs7498665	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16p11.2	ATP2A1, SH2B1	rs7498665-G	0.44	1E-9		3.69	[2.51-4.87] percentage SD increase	Illumina [305846]	N
805	chr16	28883240	28883241	rs7498665	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16p11.2	ATP2A1, SH2B1	rs7498665-G	0.44	3E-10		3.63	[2.49-4.77] % SD increase	Illumina [305846]	N
805	chr16	28883326	28883327	rs28433345	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	SH2B1	rs28433345-T	NR	3E-15		7.884	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
805	chr16	28885658	28885659	rs7359397	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p11.2	SH2B1	rs7359397-?	NR	7E-11		0.013461787	[0.0094-0.0175] unit decrease	NR [7306098]	N
805	chr16	28885658	28885659	rs7359397	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16p11.2	APOB48R, SULT1A2, AC138894.2, ATXN2L, TUFM, SH2B1	rs7359397-T	0.40	2E-20		0.15	[0.11-0.19] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
805	chr16	28888408	28888409	rs9933198	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	16p11.2		rs9933198-T	0.2422	6E-16		0.97	[0.73-1.21] unit decrease	Affymetrix [9800000]	N
805	chr16	28888408	28888409	rs9933198	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	16p11.2		rs9933198-C	0.76	5E-10		0.042	[0.028-0.056] unit increase	Affymetrix [NR]	N
805	chr16	28888408	28888409	rs9933198	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	16p11.2		rs9933198-C	0.76	6E-7		0.034	[0.02-0.048] unit increase	Affymetrix [NR]	N
805	chr16	28889485	28889486	rs3888190	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	16p11.2	NPIPL1	rs3888190-A	NR	1E-24		0.031	[0.025-0.037] unit increase	Illumina [2013566] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16p11.2	ATP2A1, ATP2A1-AS1	rs3888190-A	0.34	2E-31		0.031	[0.025-0.037] unit increase	Illumina [6108953] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	6E-18				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	3E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	2E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	4E-15		0.0294	[0.022-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	2E-7	(women)	0.0247	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	1E-10	(men)	0.0355	[0.025-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	6E-11	(men)	0.0319	[0.022-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	6E-10	(women)	0.0262	[0.018-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	ATP2A1	rs3888190-A	0.3835	2E-18		0.029	[0.023-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	16p11.2	ATP2A1	rs3888190-A	NR	8E-9	(additive model)	0.024	[0.016-0.032] unit increase	NR [9288881] (imputed)	N
805	chr16	28889485	28889486	rs3888190	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p11.2	NR	rs3888190-A	0.403407646421344	1E-29		0.030506346	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
805	chr16	28889485	28889486	rs3888190	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	ATP2A1	rs3888190-A	0.403	4E-12	(EA, women)	0.028	[0.02-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
805	chr16	28889485	28889486	rs3888190	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	ATP2A1	rs3888190-A	0.403	3E-23	(EA)	0.031	[0.025-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
805	chr16	28889485	28889486	rs3888190	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	ATP2A1	rs3888190-A	0.402	1E-17	(EA, men)	0.035	[0.027-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
805	chr16	28889485	28889486	rs3888190	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	ATP2A1	rs3888190-A	0.397	3E-25		0.031	[0.025-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
805	chr16	28889485	28889486	rs3888190	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	ATP2A1	rs3888190-A	0.4034	9E-22	(EA)	0.0345	[0.027-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28889485	28889486	rs3888190	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	ATP2A1	rs3888190-A	0.4034	3E-14	(EA,women)	0.0355	[0.026-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28889485	28889486	rs3888190	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	ATP2A1	rs3888190-A	0.4034	1E-11	(EA, men)	0.0336	[0.024-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
805	chr16	28893136	28893137	rs72793818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p11.2		rs72793818-A	NR	2E-37		0.0272	[0.023-0.031] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
805	chr16	28893570	28893571	rs7498555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs7498555-C	0.341439	7E-47				Affymetrix, Illumina [24246363] (imputed)	N
805	chr16	28893570	28893571	rs7498555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p11.2	NR	rs7498555-C	0.394319	4E-49		0.02751	[0.024-0.031] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
805	chr16	28893570	28893571	rs7498555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs7498555-?	NR	2E-15				NR [~ 8900000] (imputed)	N
805	chr16	28895129	28895130	rs8061590	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	16p11.2	NR	rs8061590-A	0.59747	3E-21		0.0288317	[0.023-0.035] unit increase	Affymetrix [16577424] (imputed)	N
805	chr16	28895129	28895130	rs8061590	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p11.2	NA	rs8061590-A	0.6181	3E-66		0.0284	[0.025-0.032] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28895129	28895130	rs8061590	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	16p11.2	SH2B1	rs8061590-A		8E-8		0.0049	[0.0031-0.0067] unit decrease	Illumina [at least 200000]	N
805	chr16	28897451	28897452	rs8056890	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p11.2	NR	rs8056890-G	0.6775	2E-12		0.0295	[0.021-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
805	chr16	28897451	28897452	rs8056890	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	16p11.2	ATP2A1	rs8056890-?	NR	6E-15				NR [5554549] (imputed)	N
805	chr16	28897451	28897452	rs8056890	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	16p11.2	ATP2A1	rs8056890-?	NR	9E-40				NR [5554549] (imputed)	N
805	chr16	28897451	28897452	rs8056890	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	16p11.2	ATP2A1	rs8056890-?	NR	1E-9				NR [5554549] (imputed)	N
805	chr16	28897451	28897452	rs8056890	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	16p11.2	ATP2A1	rs8056890-?	NR	2E-41				NR [5554549] (imputed)	N
805	chr16	28897451	28897452	rs8056890	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p11.2	ATXN2L, RP11-24N18.1	rs8056890-A	0.2959	2E-6	(conditional)	0.0254	NR unit decrease	NR [NR]	N
805	chr16	28906083	28906084	rs9931989	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p11.2	NR	rs9931989-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
805	chr16	28906083	28906084	rs9931989	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16p11.2	NR	rs9931989-C	0.6674	5E-22		0.0171	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
805	chr16	28913786	28913787	rs7189927	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs7189927-C	0.59817	3E-11		0.167	[0.12-0.22] unit increase	Illumina [18238311] (imputed)	N
805	chr16	28913786	28913787	rs7189927	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	16p11.2	NR	rs7189927-?		3E-11		0.0149741	[0.011-0.019] unit increase	Affymetrix [19400418] (imputed)	N
805	chr16	28915216	28915217	rs8046545	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16p11.2	ATP2A1	rs8046545-G	0.3589	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
805	chr16	28915432	28915433	rs2071342	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16p11.2	RABEP2	rs2071342-A	0.6435	6E-9		0.011758201	[0.0078-0.0157] unit decrease	Illumina [9339358] (imputed)	N
805	chr16	28915432	28915433	rs2071342	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	ATP2A1	rs2071342-A	NR	5E-12		0.021170044	[0.015-0.027] unit decrease	Affymetrix [NR]	N
805	chr16	28915526	28915527	rs10499	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	16p11.2	RABEP2, ATP2A1	rs10499-A	0.651	1E-9		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [11733371] (imputed)	N
805	chr16	28917643	28917644	rs7188071	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p11.2	NR	rs7188071-C	0.6365	1E-9		0.0292	[0.02-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
805	chr16	28917643	28917644	rs7188071	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16p11.2	RABEP2	rs7188071-T	0.353251	3E-8		0.0109104	[0.007-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
805	chr16	28917643	28917644	rs7188071	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16p11.2	RABEP2	rs7188071-T	0.3593	6E-11		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
805	chr16	28919583	28919583	rs10653411	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	16p11.2	NR	rs10653411-?	0.6591	8E-8	(Pericalcarine)	6.843125	[4.35-9.34] unit decrease	Affymetrix, Illumina [NR]	N
805	chr16	28921808	28921809	rs7184597	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16p11.2	RABEP2, SH2B1	rs7184597-T	0.33	7E-9	(Obesity class II)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
805	chr16	28927817	28927818	rs12919058	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	16p11.2	RABEP2	rs12919058-A	0.3403	2E-9		0.012806224	[0.0086-0.017] unit increase	Affymetrix [up to 18485882] (imputed)	N
805	chr16	28933247	28933248	rs6565293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16p11.2	RABEP2	rs6565293-C	NR	8E-9		0.0179293	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
805	chr16	28933247	28933248	rs6565293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16p11.2	RABEP2	rs6565293-C	NR	9E-12		0.0204002	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
805	chr16	28937258	28937259	rs4072402	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	16p11.2	RABEP2	rs4072402-?	NR	6E-12				NR [5554549] (imputed)	N
805	chr16	28937258	28937259	rs4072402	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	16p11.2	RABEP2	rs4072402-?	NR	3E-28				NR [5554549] (imputed)	N
805	chr16	28944395	28944396	rs2904880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p11.2	RABEP2, CD19	rs2904880-C	NR	2E-8		0.0170948	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
805	chr16	28944395	28944396	rs2904880	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on B cell	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs2904880-G	0.59858	7E-10		0.1678	[0.11-0.22] unit increase	Illumina [18030716] (imputed)	N
805	chr16	28944395	28944396	rs2904880	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16p11.2	CD19	rs2904880-C	0.3094	8E-10		0.065	[0.044-0.086] unit decrease	NR [7784415] (imputed)	N
805	chr16	28944395	28944396	rs2904880	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	CD19	rs2904880-C	NR	3E-10		0.020209912	[0.014-0.027] unit decrease	Affymetrix [NR]	N
805	chr16	28944395	28944396	rs2904880	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p11.2	CD19, IL27	rs2904880-C	0.3265	1E-35		0.0275	[0.023-0.032] unit increase	Illumina [246328]	N
805	chr16	28951456	28951457	rs11645302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs11645302-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
805	chr16	28951456	28951457	rs11645302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16p11.2	Intergenic	rs11645302-T	0.1841	2E-9	(MTAG)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
805	chr16	28964715	28964716	rs62037423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p11.2	NR	rs62037423-G	0.359029	3E-11		0.012785	[0.009-0.0166] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
805	chr16	28964715	28964716	rs62037423	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	16p11.2	NFATC2IP	rs62037423-?	NR	7E-9		0.03042	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
806	chr16	28973267	28973268	rs11643297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16p11.2	NR	rs11643297-?	NR	7E-8		5.386	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
806	chr16	28977019	28977020	rs7500321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16p11.2		rs7500321-A	NR	7E-12		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
806	chr16	28977019	28977020	rs7500321	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16p11.2	ENSG00000260853	rs7500321-A	NR	7E-9		0.018540094	[0.012-0.025] unit increase	Affymetrix [NR]	N
806	chr16	28977712	28977713	rs1137843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs1137843-C	0.327802	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
806	chr16	28987856	28987857	rs78722125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs78722125-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
806	chr16	28988268	28988269	rs8045689	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	16p11.2	LAT, RP11-264B17.4, SPNS1	rs8045689-T	0.7466	6E-6	(conditional)	0.0249	NR unit increase	NR [NR]	N
806	chr16	28995756	28995757	rs7140	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16p11.2	NR	rs7140-A	NR	2E-9		5.998	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
806	chr16	28998110	28998111	rs4788115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p11.2		rs4788115-A	0.1804	2E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
806	chr16	28998110	28998111	rs4788115	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p11.2	Intergenic	rs4788115-A	0.1804	1E-9	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
806	chr16	29002705	29002706	rs62037427	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs62037427-?	NR	4E-8		0.0465	[0.03-0.063] unit increase	Illumina [at least 560000] (imputed)	N
806	chr16	29008229	29008230	rs140599973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	16p11.2		rs140599973-A	0.18895	4E-8		0.0242816	[0.016-0.033] unit decrease	Illumina [13478928] (imputed)	N
807	chr16	29112644	29112645	rs575930782	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs575930782-A	0.0087	2E-9		0.8018	[0.54-1.06] unit decrease	Illumina [18238264] (imputed)	N
807	chr16	29112644	29112645	rs575930782	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs575930782-A	0.0087	3E-11		0.8861	[0.63-1.15] unit decrease	Illumina [18238264] (imputed)	N
807	chr16	29158793	29158794	rs252491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs252491-G	0.515326	5E-12				Affymetrix, Illumina [23472807] (imputed)	N
807	chr16	29158793	29158794	rs252491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p11.2	NR	rs252491-G	0.514391	6E-14		0.014445	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
808	chr16	29246101	29246102	rs194045	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	16p11.2	Intergenic	rs194045-G	0.888	6E-6	(Trend model)	2.13	[1.51-3.02]	Illumina [508761]	N
808	chr16	29297746	29297747	rs553543618	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs553543618-A	0.00675	1E-10		0.9616	[0.67-1.25] unit decrease	Illumina [18238311] (imputed)	N
808	chr16	29297746	29297747	rs553543618	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs553543618-A	0.00675	6E-12		1.01	[0.72-1.3] unit decrease	Illumina [18238311] (imputed)	N
808	chr16	29297746	29297747	rs553543618	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs553543618-A	0.00675	9E-10		0.9059	[0.62-1.19] unit decrease	Illumina [18238311] (imputed)	N
808	chr16	29297746	29297747	rs553543618	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD27- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs553543618-A	0.00675	2E-8		0.8379	[0.55-1.13] unit decrease	Illumina [18237800] (imputed)	N
808	chr16	29297746	29297747	rs553543618	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs553543618-A	0.00675	7E-12		1.023	[0.73-1.31] unit decrease	Illumina [18238311] (imputed)	N
808	chr16	29305172	29305173	rs149549354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p11.2		rs149549354-?	NR	5E-9				NR [~ 8900000] (imputed)	N
808	chr16	29311499	29311500	rs536748263	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	16p11.2	RUNDC2C	rs536748263-T	0.00126	3E-8		0.29	[0.19-0.39] unit increase	Illumina [~ 250000] (imputed)	N
810	chr16	29588386	29588387	rs181053507	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	16p11.2	RP11-345J4.8	rs181053507-T	NR	3E-6		0.02862	[0.017-0.041] unit increase	Illumina [NR] (imputed)	N
811	chr16	29652148	29652149	rs11150562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p11.2	CA5AP1	rs11150562-G	0.0646640000000001	2E-13		0.03393982	[0.025-0.043] unit increase	Affymetrix [93095623] (imputed)	N
811	chr16	29656876	29656877	rs9888858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p11.2		rs9888858-A	0.064235	2E-22		0.04489891	[0.036-0.054] unit increase	Affymetrix [93095623] (imputed)	N
811	chr16	29661293	29661294	rs9923283	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16p11.2	intergenic	rs9923283-T	0.0634	7E-15		0.05857671	[0.044-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
811	chr16	29674032	29674033	rs11574552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs11574552-C	0.2043	4E-18				Affymetrix, Illumina [24588908] (imputed)	N
811	chr16	29684179	29684180	rs17842268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16p11.2	NR	rs17842268-C	0.3397	2E-8	(QPRT)	0.0716	NR unit increase	Illumina [1671387] (imputed)	N
812	chr16	29820479	29820480	rs34286592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p11.2	AC009133.14, MAZ, AC009133.20	rs34286592-T	0.145378	7E-13		0.023204157	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr16	29820479	29820480	rs34286592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16p11.2	NR	rs34286592-C	0.854175	6E-18		0.023569	[0.018-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
812	chr16	29820479	29820480	rs34286592	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	16p11.2	MAZ	rs34286592-T	NR	5E-7		1.16	[1.09-1.23]	Illumina [at least 8143088] (imputed)	N
812	chr16	29826537	29826538	rs10204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs10204-T	0.15548	8E-17				Affymetrix, Illumina [17210439] (imputed)	N
812	chr16	29860862	29860863	rs4788188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p11.2	MVP	rs4788188-A	NR	3E-8		0.0223344	[0.014-0.03] unit increase	Affymetrix [321114] (imputed)	N
812	chr16	29866795	29866795	rs528863805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	16p11.2	CDIPT	rs528863805-AT	0.1585	2E-9		0.03061159	[0.021-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr16	29874934	29874935	rs889695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p11.2	NR	rs889695-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
812	chr16	29882489	29882490	rs12917712	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	ALDOA, ASPHD1, CCDC95, DOC2A, FAM57B, FLJ25404, GDPD3, HIRIP3, KCTD13, PPP4C, SEZ6L2, TAOK2, TBX6, TMEM219, YPEL3	rs12917712-T	0.323003	6E-6	(females)	0.009083	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
812	chr16	29882489	29882490	rs12917712	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	ALDOA, ASPHD1, CCDC95, DOC2A, FAM57B, FLJ25404, GDPD3, HIRIP3, KCTD13, PPP4C, SEZ6L2, TAOK2, TBX6, TMEM219, YPEL3	rs12917712-T	0.323003	4E-8		0.00797	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
812	chr16	29882489	29882490	rs12917712	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p11.2	SEZ6L2	rs12917712-T	0.29	7E-6		1.07		Illumina [2100739] (imputed)	N
813	chr16	29885446	29885447	rs4787483	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	16p11.2	SEZ6L2	rs4787483-?	0.34	2E-6	(waist cirumference)	0.16	[0.09-0.23] mm increase	Illumina [316730]	N
813	chr16	29892183	29892184	rs113443718	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16p11.2	SEZ6L2	rs113443718-A	0.31	7E-11		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
813	chr16	29892183	29892184	rs113443718	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16p11.2	SEZ6L2	rs113443718-G	0.6913	3E-11		0.0073	[0.0051-0.0095] unit increase	Affymetrix [~ 7740000] (imputed)	N
813	chr16	29892183	29892184	rs113443718	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	16p11.2	SEZ6L2	rs113443718-A	0.3095	3E-15		0.01906697	[0.014-0.024] unit decrease	Affymetrix [11514936] (imputed)	N
813	chr16	29892183	29892184	rs113443718	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16p11.2	NR	rs113443718-A	0.305	1E-10		0.010208258	[0.0071-0.0133] unit decrease	NR [~ 10000000] (imputed)	N
813	chr16	29906545	29906546	rs4787484	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	16p11.2	SEZ6L2	rs4787484-?	NR	1E-6				Affymetrix, Illumina [~ 1300000]	N
813	chr16	29908776	29908777	rs12930239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs12930239-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
813	chr16	29918033	29918034	rs1129700	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16p11.2	KCTD13, TBX6	rs1129700-T	0.44	2E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
813	chr16	29925444	29925445	rs8059619	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16p11.2	NR	rs8059619-C	0.450262	6E-12		0.0144378	[0.01-0.019] unit decrease	NR [NR]	N
813	chr16	29925444	29925445	rs8059619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p11.2		rs8059619-?	NR	1E-11				NR [~ 8900000] (imputed)	N
813	chr16	29926470	29926471	rs11646118	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	16p11.2	KCTD13	rs11646118-T	0.912927	4E-10	(EA)	0.013771	[0.0095-0.0181] unit increase	Affymetrix [~ 8800000] (imputed)	N
813	chr16	29926551	29926552	rs72798148	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p11.2		rs72798148-T	0.78	1E-8				NR [NR] (imputed)	N
813	chr16	29926551	29926552	rs72798148	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p11.2		rs72798148-T	0.78	7E-18		0.016	% increase	NR [NR] (imputed)	N
813	chr16	29929727	29929728	rs8052502	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16p11.2	RREB1, SSR1	rs8052502-?		1E-8				NR [7428630] (imputed)	N
813	chr16	29932063	29932064	rs4609871	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16p11.2	NA	rs4609871-T	0.5397	7E-38		0.0219	[0.019-0.025] unit increase	NR [~ 27400000] (imputed)	N
813	chr16	29932113	29932114	rs79931750	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	16p11.2		rs79931750-T	0.02921	6E-6		2.213	[1.568-3.12399999999999]	Affymetrix [7975321] (imputed)	N
813	chr16	29939876	29939877	rs12691307	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	16p11.2	NR	rs12691307-?		5E-10				NR [8377093]	N
813	chr16	29939876	29939877	rs12691307	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	16p11.2	NR	rs12691307-?		1E-9				NR [520857]	N
813	chr16	29939876	29939877	rs12691307	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	16p11.2	NR	rs12691307-?	NR	4E-10				Illumina [up to 5582932] (imputed)	N
813	chr16	29939876	29939877	rs12691307	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p11.2	KCTD13	rs12691307-A	NR	2E-10	(EA)	1.075	[1.05-1.1]	Illumina [6627481] (imputed)	N
813	chr16	29939876	29939877	rs12691307	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16p11.2	KCTD13	rs12691307-A	0.4398	6E-10		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
813	chr16	29939876	29939877	rs12691307	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16p11.2	NR	rs12691307-A	NR	2E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
813	chr16	29939876	29939877	rs12691307	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	16p11.2	ALDOA, ASPHD1, C16orf92, DOC2A, FAM57B, GDPD3, HIRIP3, INO80E, KCTD13, MAPK3, PPP4C, SEZ6L2, TAOK2, TBX6, TMEM219, YPEL3	rs12691307-A	0.51	5E-11		1.073	[1.051-1.096]	Affymetrix, Illumina [9005918] (imputed)	N
813	chr16	29943366	29943367	rs12919683	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs12919683-?	NR	3E-9				NR [2625067]	N
813	chr16	29954653	29954654	rs4402589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16p11.2		rs4402589-G	NR	6E-34		0.0236	[0.02-0.027] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
813	chr16	29954653	29954654	rs4402589	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs4402589-?	NR	2E-33				Affymetrix [~ 8270000] (imputed)	N
813	chr16	29954653	29954654	rs4402589	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p11.2	NR	rs4402589-T	0.4471	6E-26		0.0262727	[0.021-0.031] unit decrease	Affymetrix [10549349] (imputed)	N
813	chr16	29958215	29958216	rs8054556	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16p11.2	NR	rs8054556-G	0.5383	4E-15		0.0364	[0.027-0.045] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
813	chr16	29958215	29958216	rs8054556	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16p11.2	NR	rs8054556-G	0.5699	2E-16		0.0317	[0.024-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
813	chr16	29958215	29958216	rs8054556	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16p11.2	TMEM219, KCTD13	rs8054556-?		4E-11				NR [6786993] (imputed)	N
813	chr16	29958215	29958216	rs8054556	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	16p11.2	TMEM219	rs8054556-A	0.46	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
813	chr16	29958215	29958216	rs8054556	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	16p11.2	TMEM219	rs8054556-A	0.46	4E-8		0.03	[0.019-0.041] unit increase	Affymetrix [at least 8900000] (imputed)	N
813	chr16	29958215	29958216	rs8054556	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	16p11.2	TMEM219	rs8054556-G	NR	5E-9		0.008905	[0.0059-0.0119] unit decrease	Affymetrix [18485882] (imputed)	N
813	chr16	29958215	29958216	rs8054556	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16p11.2	NR	rs8054556-A	0.4647	8E-21		0.0184	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
813	chr16	29958215	29958216	rs8054556	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	16p11.2	ALDOA, ASPHD1, C16orf92, DOC2A, FAM57B, GDPD3, HIRIP3, INO80E, KCTD13, MAPK3, PPP4C, SEZ6L2, TAOK2, TBX6, TMEM219, YPEL3	rs8054556-?		4E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
813	chr16	29961343	29961344	rs143504748	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs143504748-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
813	chr16	29966276	29966277	rs11646127	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	16p11.2	ALDOA, ASPHD1, C16orf92, DOC2A, FAM57B, GDPD3, HIRIP3, INO80E, KCTD13, MAPK3, PPP4C, SEZ6L2, TAOK2, TBX6, TMEM219, YPEL3	rs11646127-?	NR	6E-13		1.073	[1.05-1.09]	Illumina [8000000] (imputed)	N
813	chr16	29967433	29967434	rs4788196	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4788196-?	NR	2E-10				NR [2625067]	N
813	chr16	29967433	29967434	rs4788196	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females		MAPK3	rs4788196-G	0.44	9E-11	(Single Height)	0.07	[0.048-0.092] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
813	chr16	29968014	29968015	rs7204797	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p11.2	NR	rs7204797-C	NR	6E-11		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
813	chr16	29968014	29968015	rs7204797	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p11.2	NR	rs7204797-T	0.440736937631702	9E-10		0.018262625	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
813	chr16	29970834	29970835	rs4788198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16p11.2	TMEM219	rs4788198-T	NR	3E-10		0.0181403	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
813	chr16	29972477	29972477	rs34426199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16p11.2		rs34426199-CA	NR	9E-47		0.0315	[0.027-0.036] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
813	chr16	29972477	29972477	rs34426199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16p11.2		rs34426199-CA	NR	1E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
813	chr16	29977561	29977562	rs4787486	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	16p11.2	ALDOA, C16orf92, DOC2A, FAM57B, HIRIP3, INO80E, PPP4C, TAOK2, TMEM219	rs4787486-?	NR	7E-9				Affymetrix [up to 7325140] (imputed)	N
813	chr16	29978826	29978827	rs4788203	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16p11.2	NR	rs4788203-G	0.5666	6E-9		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
813	chr16	29982565	29982566	rs12934406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p11.2		rs12934406-T	NR	1E-9		0.0142	[0.0097-0.0187] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
813	chr16	29983118	29983119	rs9932196	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16p11.2	NR	rs9932196-T	0.4556	8E-21		0.0184	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
813	chr16	29986204	29986205	rs10871451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p11.2	NR	rs10871451-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
813	chr16	29994921	29994922	rs3814883	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p11.2		rs3814883-T	0.46	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
813	chr16	29994921	29994922	rs3814883	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	16p11.2	NR	rs3814883-T	0.4602	7E-12		0.0761745	[0.054-0.098] unit decrease	NR [NR]	N
813	chr16	29994921	29994922	rs3814883	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	16p11.2	NR	rs3814883-T	0.4602	2E-9		0.0667322	[0.045-0.088] unit decrease	NR [NR]	N
813	chr16	29994921	29994922	rs3814883	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p11.2	TAOK2	rs3814883-C	0.517555	8E-27		0.014757	[0.012-0.017] unit decrease	Affymetrix [12370749]	N
813	chr16	29994921	29994922	rs3814883	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p11.2	TAOK2	rs3814883-C	0.517497	1E-13		0.0147973	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
813	chr16	29994921	29994922	rs3814883	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16p11.2	TAOK2	rs3814883-C	0.517527	7E-16		0.0152578	[0.012-0.019] unit increase	Affymetrix [NR] (imputed)	N
813	chr16	29994921	29994922	rs3814883	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16p11.2	TAOK2	rs3814883-C	0.51746	8E-11		0.0127298	[0.0089-0.0166] unit increase	Affymetrix [NR] (imputed)	N
813	chr16	29994921	29994922	rs3814883	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16p11.2	TAOK2	rs3814883-?	NR	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
813	chr16	29994921	29994922	rs3814883	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16p11.2	TAOK2	rs3814883-T	0.48348	2E-9		0.0393918	[0.027-0.052] unit increase	Affymetrix [9463307] (imputed)	N
813	chr16	29994921	29994922	rs3814883	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16p11.2	TAOK2	rs3814883-?	NR	2E-9		0.012003836	[0.0081-0.0159] unit increase	NR [7306098]	N
813	chr16	29994921	29994922	rs3814883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p11.2		rs3814883-?	NR	7E-35				NR [~ 8900000] (imputed)	N
813	chr16	29995217	29995218	rs4788204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16p11.2	NA	rs4788204-A	0.4594	3E-21		0.0169	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
813	chr16	29998199	29998200	rs4077410	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p11.2	TAOK2	rs4077410-G	0.5114000000000001	2E-21		0.0165	[0.013-0.02] unit increase	Illumina [246328]	N
813	chr16	29999992	29999993	rs60683614	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16p11.2	TAOK2	rs60683614-T	0.066665	8E-9		0.360614	[0.24-0.48] unit decrease	Affymetrix [9463307] (imputed)	N
813	chr16	29999992	29999993	rs60683614	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	16p11.2	TAOK2	rs60683614-T	0.066665	3E-8		0.0100877	[0.0065-0.0137] unit increase	Affymetrix [9463307] (imputed)	N
813	chr16	30000900	30000901	rs3814881	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16p11.2	NR	rs3814881-?	NR	7E-12		1.0604566	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
813	chr16	30000900	30000901	rs3814881	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16p11.2	TAOK2	rs3814881-G	NR	4E-12		1.0672358	[1.05-1.09]	Illumina [6627481] (imputed)	N
813	chr16	30000900	30000901	rs3814881	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	16p11.2	ASPHD1, DOC2A, FAM57B, INO80E, KCTD13, MAPK3, SEZ6L2, TAOK2, TMEM219, YPEL3	rs3814881-G	NR	8E-13		1.0683761	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
813	chr16	30015336	30015337	rs4787491	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	16p11.2	NPIPB11	rs4787491-A	0.46525	4E-9		5.89	z score increase	NR [10847151] (imputed)	N
813	chr16	30015336	30015337	rs4787491	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	CCDC95	rs4787491-A	0.4825	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
813	chr16	30015336	30015337	rs4787491	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p11.2	CCDC95	rs4787491-A	0.4825	3E-7		0.0193	[0.012-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
813	chr16	30015336	30015337	rs4787491	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	CCDC95	rs4787491-A	0.4825	6E-6	(women)	0.0198	[0.011-0.028] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
813	chr16	30015336	30015337	rs4787491	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	CCDC95	rs4787491-A	0.4825	2E-9		0.0201	[0.014-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
813	chr16	30015336	30015337	rs4787491	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	INO80E	rs4787491-G	0.509	2E-6	(EA)	0.016	[0.0092-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
813	chr16	30015336	30015337	rs4787491	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	INO80E	rs4787491-G	0.509	2E-6		0.015	[0.0088-0.0214] kg/m2 increase	Affymetrix, Illumina [2550021]	N
814	chr16	30026747	30026748	rs12935701	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p11.2	NR	rs12935701-?	NR	6E-19		0.20009	[0.16-0.24] unit increase	Affymetrix [7794483] (imputed)	N
814	chr16	30026747	30026748	rs12935701	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p11.2	NR	rs12935701-?	NR	1E-6	(female)	0.1196	[0.071-0.168] unit increase	Affymetrix [7794483] (imputed)	N
814	chr16	30026747	30026748	rs12935701	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16p11.2	NR	rs12935701-?	NR	1E-13	(male)	0.26356	[0.19-0.33] unit increase	Affymetrix [7794483] (imputed)	N
814	chr16	30028599	30028600	rs34047589	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16p11.2	DOC2A	rs34047589-CA	0.503	1E-6		0.0316	[0.019-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
814	chr16	30029600	30029600	rs142032045	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	16p11.2	NR	rs142032045-CA	0.384962	3E-9		0.0621026	[0.042-0.083] unit increase	Affymetrix [21375087] (imputed)	N
814	chr16	30030194	30030195	rs11642612	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or LDL levels (pleiotropy)	404,128 European ancestry individuals with LDL-C measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	16p11.2		rs11642612-A	0.62	2E-8				NR [NR] (imputed)	N
814	chr16	30030194	30030195	rs11642612	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16p11.2	NA	rs11642612-A	0.595	2E-36		0.0218	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
814	chr16	30034126	30034127	rs11150582	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs11150582-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
814	chr16	30035805	30035806	rs72791208	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs72791208-?	NR	4E-6		0.1375	[0.079-0.196] unit decrease	Illumina [at least 560000] (imputed)	N
814	chr16	30039677	30039678	rs11150584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16p11.2		rs11150584-C	0.534	2E-10				Affymetrix [10369434] (imputed)	N
814	chr16	30043963	30043963	rs775400785	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	16p11.2	NR	rs775400785-G	0.435553	4E-8		0.0563069	[0.035-0.077] unit increase	Affymetrix [21375087] (imputed)	N
814	chr16	30045788	30045789	rs11642430	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16p11.2	FAM57B	rs11642430-G	0.399	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
814	chr16	30050604	30050605	rs147553474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs147553474-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
814	chr16	30055749	30055750	rs4788218	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16p11.2	FAM57B	rs4788218-T	0.599	6E-46		0.0275	[0.024-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
814	chr16	30055749	30055750	rs4788218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p11.2		rs4788218-?	NR	3E-40				NR [~ 8900000] (imputed)	N
814	chr16	30061244	30061245	rs35810240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16p11.2	FAM57B	rs35810240-C	0.3665	6E-12		0.0282475	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30061244	30061245	rs35810240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16p11.2	FAM57B	rs35810240-C	0.3664	2E-13		0.03021759	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30061244	30061245	rs35810240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16p11.2	FAM57B	rs35810240-C	0.3664	2E-13		0.03017891	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30068353	30068354	rs9939774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs9939774-T	0.382771	1E-48				Affymetrix, Illumina [19872809] (imputed)	N
814	chr16	30068353	30068354	rs9939774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16p11.2	NR	rs9939774-T	0.404524	2E-47		0.029236	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
814	chr16	30068353	30068354	rs9939774	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16p11.2	ALDOA	rs9939774-T	0.405631	9E-9		0.03533265	[0.023-0.047] unit increase	Affymetrix [7288503] (imputed)	N
814	chr16	30070539	30070540	rs73530148	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs73530148-T	NR	3E-8		1.082		Affymetrix [9869154] (imputed)	N
814	chr16	30070539	30070540	rs73530148	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		ALDOA	rs73530148-T	NR	5E-7		1.04	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
814	chr16	30078491	30078492	rs9783783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p11.2	ALDOA	rs9783783-C	0.502619	2E-16		0.018625394	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30078491	30078492	rs9783783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p11.2	ALDOA	rs9783783-G	0.497656	2E-17		0.018970385	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30081366	30081367	rs2071390	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	16p11.2	NR	rs2071390-T	0.159194	1E-8		0.0770111	[0.05-0.104] unit decrease	Affymetrix [21375087] (imputed)	N
814	chr16	30081366	30081367	rs2071390	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16p11.2	PPP4C	rs2071390-T	0.1591	3E-8		0.014712622	[0.0095-0.0199] unit decrease	Illumina [9339358] (imputed)	N
814	chr16	30082507	30082508	rs7201518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p11.2	PPP4C	rs7201518-T	0.480398	2E-36		0.027919846	[0.024-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30082507	30082508	rs7201518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p11.2		rs7201518-?	NR	5E-32				NR [~ 8900000] (imputed)	N
814	chr16	30092047	30092048	rs9932605	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16p11.2	NR	rs9932605-G	0.4829	3E-10		0.013063563	[0.009-0.0171] unit decrease	Affymetrix [10613246] (imputed)	N
814	chr16	30092047	30092048	rs9932605	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16p11.2	NR	rs9932605-G	0.474	1E-10		0.011322941	[0.0079-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
814	chr16	30093385	30093389	rs201884359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16p11.2		rs201884359-A	NR	1E-21		0.0166	[0.013-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
814	chr16	30093778	30093779	rs2278557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16p11.2		rs2278557-G	NR	4E-13		0.0479	[0.035-0.061] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
814	chr16	30093778	30093779	rs2278557	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16p11.2	PPP4C	rs2278557-G	0.40521	4E-13		0.058077358	[0.042-0.074] unit increase	Affymetrix [7288503] (imputed)	N
814	chr16	30093778	30093779	rs2278557	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16p11.2	PPP4C	rs2278557-?	NR	2E-8		0.02628	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
814	chr16	30095235	30095236	rs11644459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	16p11.2		rs11644459-T	0.293357	5E-8		0.0217182	[0.014-0.03] unit increase	Illumina [13476299] (imputed)	N
814	chr16	30098189	30098192	rs3833842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	16p11.2		rs3833842-G	0.290832	1E-11		0.0270948	[0.019-0.035] unit increase	Illumina [13476266] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16p11.2		rs3809627-A	0.42	5E-11		6.57	z score increase	Affymetrix [9061022] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	6E-72		0.0316	[0.028-0.035] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	0.646506	1E-14		0.0254869	[0.019-0.032] unit increase	Illumina [13479135] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	2E-52		0.0311	[0.027-0.035] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	3E-44		0.0285	[0.025-0.032] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	2E-22		0.0162	[0.013-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	8E-24		0.0171	[0.014-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16p11.2		rs3809627-A	NR	7E-26		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.4004	8E-12				NR [9056863] (imputed)	N
814	chr16	30103159	30103160	rs3809627	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16p11.2		rs3809627-C	0.598	1E-20				Affymetrix [10369434] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402105	4E-18		0.019833276	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402082	6E-91		0.045466255	[0.041-0.05] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.401943	5E-67		0.039409928	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.401878	5E-63		0.038418457	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.401663	3E-11		0.015502903	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.40203	1E-72		0.0409643	[0.037-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402003	1E-69		0.039438546	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.40201	1E-11		0.015393927	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402081	1E-22		0.02203701	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402071	3E-29		0.025293702	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p11.2	TBX6	rs3809627-A	0.402057	1E-47		0.033541143	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.461496	4E-125				Affymetrix, Illumina [24332387] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.402746	4E-108		0.043643	[0.04-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	16p11.2	NR	rs3809627-C	0.33768	1E-16		0.033767	[0.026-0.042] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.453036	2E-106				Affymetrix, Illumina [24246363] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.402704	1E-97		0.040709	[0.037-0.045] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	16p11.2	NR	rs3809627-C	0.333711	5E-12		0.031268	[0.022-0.04] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.452792	3E-99				Affymetrix, Illumina [20825802] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.402644	2E-95		0.040755	[0.037-0.045] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.459359	8E-27				Affymetrix, Illumina [24653286] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.402529	7E-22		0.018961	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.458239	7E-35				Affymetrix, Illumina [24558453] (imputed)	N
814	chr16	30103159	30103160	rs3809627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16p11.2	NR	rs3809627-A	0.402424	1E-29		0.022377	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
814	chr16	30103159	30103160	rs3809627	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16p11.2	TBX6	rs3809627-C	NR	1E-21		1.0943314	NR	Affymetrix, Illumina [8278136] (imputed)	N
814	chr16	30103159	30103160	rs3809627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p11.2		rs3809627-?	NR	3E-90				NR [~ 8900000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs3809627-?	NR	2E-59				NR [~ 8900000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	16p11.2	TBX6	rs3809627-?	NR	5E-13		0.03384	[0.025-0.043] unit increase novel	Illumina [6108953] (imputed)	N
814	chr16	30103159	30103160	rs3809627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16p11.2	TBX6	rs3809627-A	0.4018	8E-15		0.02826084	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p11.2	TBX6	rs3809627-A	0.4017	3E-27		0.03918554	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p11.2	TBX6	rs3809627-A	0.4017	5E-32		0.04236006	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p11.2	TBX6	rs3809627-A	0.4016	5E-33		0.04317826	[0.036-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30103159	30103160	rs3809627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p11.2	TBX6	rs3809627-A	0.4018	1E-17		0.03117084	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
814	chr16	30111903	30111904	rs6565174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16p11.2		rs6565174-?	NR	1E-9				NR [~ 8900000] (imputed)	N
814	chr16	30111903	30111904	rs6565174	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16p11.2	RP11-455F5.3	rs6565174-A	0.1104	7E-14		0.1821	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
814	chr16	30120300	30120301	rs56060058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs56060058-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
814	chr16	30120352	30120353	rs56013963	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16p11.2	NR	rs56013963-G	0.137993	3E-11		0.022292	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
814	chr16	30125839	30125840	rs7542	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16p11.2		rs7542-C	0.48	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
814	chr16	30130492	30130493	rs11865086	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	16p11.2	MAPK3	rs11865086-C	0.53	2E-7		0.039	[0.023-0.055] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
814	chr16	30134655	30134656	rs28529403	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16p11.2	MAPK3	rs28529403-C	0.40234375	5E-6	(MAPK3, 2855_49_2)	0.11272133	[0.064-0.161] unit increase	Illumina [> 1000000] (imputed)	N
814	chr16	30138027	30138027	rs397737647	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16p11.2	MAPK3	rs397737647-CT	0.2822	4E-6		0.0353	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
814	chr16	30138027	30138027	rs397737647	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	MAPK3	rs397737647-CT	0.2826	4E-8		0.044	[0.028-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
814	chr16	30138027	30138027	rs397737647	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	MAPK3	rs397737647-CT	0.2826	4E-8		0.044	[0.028-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
814	chr16	30141984	30141985	rs55732507	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	16p11.2		rs55732507-?	NR	1E-8				NR [7857346] (imputed)	N
814	chr16	30141984	30141985	rs55732507	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16p11.2	ASPHD1, KCTD13, TMEM219, TAOK2, HIRIP3, INO80E, DOC2A, C16orf92, FAM57B, ALDOA, PPP4C, TBX6, YPEL3, GDPD3, MAPK3, CORO1A, BOLA2B, SLX1A, SULT1A3, CD2BP2, TBC1D10B, MYLPF, ZNF48, SEPT1	rs55732507-?		4E-13				NR [7428630] (imputed)	N
814	chr16	30142020	30142021	rs57149692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16p11.2		rs57149692-?	NR	3E-12				NR [~ 8900000] (imputed)	N
814	chr16	30142020	30142021	rs57149692	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p11.2	NA	rs57149692-C	0.4002	1E-31		0.0228	[0.019-0.027] unit decrease	NR [~ 27400000] (imputed)	N
814	chr16	30145785	30145798	rs112399781	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16p11.2	NR	rs112399781-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
815	chr16	30156397	30156398	rs12931792	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	MAPK3, CORO1A	rs12931792-G	0.54	4E-8		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
815	chr16	30156397	30156398	rs12931792	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	MAPK3, CORO1A	rs12931792-?	NR	4E-8		1.057	[1.036-1.078]	Illumina [13757430] (imputed)	N
815	chr16	30156962	30156963	rs7204270	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16p11.2	MAPK3	rs7204270-G	0.49	2E-11		1.09		Illumina [161311]	N
815	chr16	30163165	30163166	rs8049778	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16p11.2	NR	rs8049778-T	0.4973	3E-14				NR [9056863] (imputed)	N
815	chr16	30171430	30171431	rs62055380	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	16p11.2	NR	rs62055380-G	NR	4E-6		2.498	[1.70-3.68]	Illumina [13976150] (imputed)	N
815	chr16	30174925	30174926	rs6565176	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	16p11.2	MAPK3, CORO1A	rs6565176-T	0.48	4E-8		1.16	[1.10-1.22]	Illumina [> 10000000] (imputed)	N
815	chr16	30177806	30177807	rs7202714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16p11.2		rs7202714-?	NR	3E-11				NR [~ 8900000] (imputed)	N
815	chr16	30198150	30198151	rs1132812	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16p11.2		rs1132812-A	0.480755	1E-8		0.0232252	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
815	chr16	30268780	30268781	rs4589573	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	16p11.2	intergenic	rs4589573-T	0.0152	1E-6		2.023	[1.21-2.83] unit increase	Affymetrix, Illumina [NR] (imputed)	N
816	chr16	30336367	30336368	rs138485659	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	16p11.2	LOC595101	rs138485659-T	NR	6E-6	(AA)			Illumina [up to 11995908] (imputed)	N
816	chr16	30336367	30336368	rs138485659	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	16p11.2	LOC595101	rs138485659-T	NR	6E-6				Illumina [up to 11995908] (imputed)	N
816	chr16	30359678	30359679	rs116215614	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	16p11.2		rs116215614-?	NR	1E-8		0.47	[0.31-0.63] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
816	chr16	30361340	30361341	rs6565180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs6565180-?	NR	5E-7		0.043	[0.026-0.06] unit increase	Illumina [at least 560000] (imputed)	N
816	chr16	30373856	30373856	rs35084919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16p11.2		rs35084919-TG	NR	3E-8		0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
816	chr16	30380485	30380486	rs4238961	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	TBC1D10B, MYLPF, ZNF48, SEPT1	rs4238961-T	0.670274	9E-9	(58 ms)	0.0341405	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
816	chr16	30380485	30380486	rs4238961	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16p11.2	TBC1D10B, MYLPF, ZNF48, SEPT1	rs4238961-T	0.670274	3E-8	(116 ms)	0.0328193	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
817	chr16	30415598	30415599	rs12929884	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16p11.2	NR	rs12929884-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
817	chr16	30419383	30419384	rs199795270	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16p11.2	FAM57B	rs199795270-C	0.0065	1E-6		1.25	[1.14-1.36]	Affymetrix, Illumina [~ 27000000] (imputed)	N
817	chr16	30423877	30423878	rs7404540	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	ZNF771	rs7404540-T	0.2884	7E-6		0.0341	[0.019-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr16	30423877	30423878	rs7404540	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16p11.2	ZNF771	rs7404540-T	0.2884	7E-6		0.0341	[0.019-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
817	chr16	30439308	30439309	rs4788415	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	16p11.2	DCTPP1	rs4788415-T	0.0966553	5E-12	(EA)	0.0148019	[0.011-0.019] unit decrease	Affymetrix [~ 8800000] (imputed)	N
817	chr16	30444998	30444999	rs67069014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	16p11.2	NR	rs67069014-T	NR	1E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
817	chr16	30448521	30448522	rs111688805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs111688805-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
817	chr16	30458719	30458720	rs4788418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p11.2	SEPHS2	rs4788418-C	0.522025	6E-18		0.020747915	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr16	30460282	30460283	rs117106225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs117106225-?	NR	2E-9				NR [~ 8900000] (imputed)	N
817	chr16	30464033	30464034	rs8044535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16p11.2	Y_RNA	rs8044535-A	0.568375	1E-9		0.013724879	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr16	30471108	30471109	rs7196129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16p11.2		rs7196129-C	NR	3E-18		0.0201	[0.016-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16p11.2		rs7196129-T	0.472355	1E-23		0.022596162	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16p11.2		rs7196129-C	0.527773	7E-17		0.018771049	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs7196129-C	0.588703	5E-37				Affymetrix, Illumina [23467995] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16p11.2	NR	rs7196129-C	0.530279	2E-39		0.025016	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs7196129-C	0.587953	2E-13				Affymetrix, Illumina [19905671] (imputed)	N
817	chr16	30471108	30471109	rs7196129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16p11.2	NR	rs7196129-C	0.529408	7E-16		0.016801	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
817	chr16	30471108	30471109	rs7196129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16p11.2	intergenic	rs7196129-C	0.5297	2E-10		0.02335646	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30474855	30474856	rs9934579	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16p11.2	NR	rs9934579-A	0.135	4E-10		0.0121585	[0.0084-0.016] unit decrease	NR [~ 9732723] (imputed)	N
817	chr16	30476516	30476517	rs113252371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p11.2		rs113252371-?	NR	2E-11				NR [~ 8900000] (imputed)	N
817	chr16	30476516	30476517	rs113252371	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	16p11.2	NR	rs113252371-?	NR	5E-6		0.0221	[0.013-0.032] unit decrease	Illumina [at least 560000] (imputed)	N
817	chr16	30482493	30482494	rs11150589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16p11.2		rs11150589-C	NR	1E-36		0.0296	[0.025-0.034] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
817	chr16	30482493	30482494	rs11150589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16p11.2		rs11150589-C	NR	1E-90		0.0475	[0.043-0.052] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
817	chr16	30482493	30482494	rs11150589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	16p11.2		rs11150589-T	0.483	3E-23				Affymetrix [10369434] (imputed)	N
817	chr16	30482493	30482494	rs11150589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p11.2	Y_RNA, ITGAL	rs11150589-C	0.517284	3E-14		0.017833536	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr16	30482493	30482494	rs11150589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16p11.2	Y_RNA, ITGAL	rs11150589-C	0.517315	3E-34		0.02724746	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30482493	30482494	rs11150589	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16p11.2	ITGAL	rs11150589-?		1E-6				Illumina [9578670] (imputed)	N
817	chr16	30482493	30482494	rs11150589	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	16p11.2	ITGAL, Y_RNA	rs11150589-C	0.514	1E-11		0.02452494	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30482493	30482494	rs11150589	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs11150589-A	0.4732	3E-10	(EA)	1.0831269	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
817	chr16	30482493	30482494	rs11150589	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16p11.2	NR	rs11150589-A	0.4732	9E-7	(EA)	1.0513153	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
817	chr16	30482493	30482494	rs11150589	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	16p11.2	ITGAL	rs11150589-T	0.463	6E-10		1.09	[1.052-1.128]	Affymetrix, Illumina [1230000] (imputed)	N
817	chr16	30482539	30482540	rs12598978	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	16p11.2		rs12598978-T	0.483	3E-41				Affymetrix [10369434] (imputed)	N
817	chr16	30482539	30482540	rs12598978	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16p11.2		rs12598978-T	0.483	3E-10				Affymetrix [10369434] (imputed)	N
817	chr16	30482539	30482540	rs12598978	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	16p11.2		rs12598978-T	0.483	5E-57				Affymetrix [10369434] (imputed)	N
817	chr16	30482539	30482540	rs12598978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs12598978-G	0.579332	7E-186				Affymetrix, Illumina [23472807] (imputed)	N
817	chr16	30482539	30482540	rs12598978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16p11.2	NR	rs12598978-G	0.519622	2E-181		0.055094	[0.051-0.059] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
817	chr16	30482802	30482803	rs12716977	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16p11.2		rs12716977-T	0.483	5E-21				Affymetrix [10369434] (imputed)	N
817	chr16	30482802	30482803	rs12716977	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	16p11.2		rs12716977-T	0.483	2E-20				Affymetrix [10369434] (imputed)	N
817	chr16	30482802	30482803	rs12716977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p11.2	Y_RNA, ITGAL	rs12716977-C	0.517356	3E-67		0.038770027	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30482802	30482803	rs12716977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16p11.2	Y_RNA, ITGAL	rs12716977-C	0.517363	8E-20		0.020338222	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30482802	30482803	rs12716977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p11.2	Y_RNA, ITGAL	rs12716977-C	0.517374	4E-130		0.054452717	[0.05-0.059] unit increase	Affymetrix [93095623] (imputed)	N
817	chr16	30482802	30482803	rs12716977	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	16p11.2	ITGAL, Y_RNA	rs12716977-C	0.5169	2E-17		0.03065369	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30482802	30482803	rs12716977	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16p11.2	ITGAL, Y_RNA	rs12716977-C	0.5169	1E-59		0.05944947	[0.052-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30485392	30485393	rs11574938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs11574938-C	0.605975	2E-93				Affymetrix, Illumina [24649327] (imputed)	N
817	chr16	30485392	30485393	rs11574938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16p11.2	NR	rs11574938-C	0.520754	8E-91		0.037688	[0.034-0.041] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
817	chr16	30485392	30485393	rs11574938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs11574938-C	0.573614	3E-24				Affymetrix, Illumina [23114412] (imputed)	N
817	chr16	30485392	30485393	rs11574938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16p11.2	NR	rs11574938-C	0.519832	2E-25		0.020345	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
817	chr16	30485392	30485393	rs11574938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16p11.2		rs11574938-?	NR	5E-63				NR [~ 8900000] (imputed)	N
817	chr16	30485392	30485393	rs11574938	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	16p11.2	ITGAL	rs11574938-C	0.5175	6E-27		0.03911751	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30485392	30485393	rs11574938	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p11.2	ITGAL	rs11574938-?	NR	5E-14	(subset analysis)			Illumina [130052]	N
817	chr16	30492822	30492823	rs1064524	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	16p11.2		rs1064524-?	NR	5E-8				Affymetrix [NR] (imputed)	N
817	chr16	30492822	30492823	rs1064524	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	16p11.2	ITGAL	rs1064524-T	0.0485	2E-7		0.5404	[NR] unit increase	Illumina [1216189] (imputed)	N
817	chr16	30495656	30495657	rs7197010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16p11.2		rs7197010-C	NR	9E-9		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
817	chr16	30495656	30495657	rs7197010	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	16p11.2		rs7197010-T	0.457	1E-15				Affymetrix [10369434] (imputed)	N
817	chr16	30500984	30500985	rs4630562	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	16p11.2	ITGAL	rs4630562-G	0.544	5E-10		0.02245011	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr16	30507264	30507265	rs6565189	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs6565189-?	NR	6E-6		0.0399	[0.023-0.057] unit increase	Illumina [at least 560000] (imputed)	N
817	chr16	30528271	30528272	rs7196298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p11.2		rs7196298-?	NR	1E-8				NR [~ 8900000] (imputed)	N
817	chr16	30538418	30538419	rs56391383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16p11.2		rs56391383-A	NR	5E-29		0.0253	[0.021-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
818	chr16	30546487	30546488	rs6565191	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16p11.2	ZNF747	rs6565191-G	0.597569	3E-28		0.00566501	[0.0046-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
818	chr16	30548351	30548352	rs72793342	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	16p11.2	NR	rs72793342-G		1E-6		0.1487	[0.088-0.209] SD units increase	NR [10700000] (imputed)	N
818	chr16	30592109	30592110	rs74249949	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16p11.2	ZNF785	rs74249949-G	0.1773	2E-10		0.03067646	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
818	chr16	30617697	30617698	rs8063005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16p11.2	NR	rs8063005-A	NR	1E-10		0.0228	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
818	chr16	30626615	30626616	rs12918327	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	16p11.2		rs12918327-T	NR	3E-8		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
818	chr16	30634299	30634300	rs9927137	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16p11.2	ZNF689	rs9927137-A	0.522349	9E-11		0.012077	[0.0084-0.0157] unit increase	NR [13737936] (imputed)	N
818	chr16	30634299	30634300	rs9927137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16p11.2		rs9927137-A	0.5298	5E-9		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
818	chr16	30634299	30634300	rs9927137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16p11.2	Intergenic	rs9927137-A	0.5298	5E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
818	chr16	30635658	30635659	rs7186852	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	16p11.2	NR	rs7186852-A	0.08	3E-7		1.29	[1.17-1.42]	Illumina [493955]	N
818	chr16	30642866	30642867	rs7197475	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	16p11.2	NR	rs7197475-A	0.08	3E-8		1.31	[1.20-1.46]	Illumina [493955]	N
818	chr16	30644215	30644216	rs7204632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	16p11.2		rs7204632-C	0.637	1E-16				Affymetrix [10369434] (imputed)	N
818	chr16	30652624	30652624	rs71374020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16p11.2		rs71374020-AT	0.299183	8E-11		0.017448759	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
818	chr16	30655699	30655699	rs200168843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16p11.2		rs200168843-TTG	NR	2E-13		0.0288	[0.021-0.036] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
818	chr16	30666366	30666367	rs3747481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16p11.2	PRR14	rs3747481-T	0.259008	1E-16		0.021031868	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr16	30671531	30671532	rs35629860	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	16p11.2	FBRS, PRR14, RNF40, SRCAP, BCL7C	rs35629860-A	0.26	4E-6		1.26	[1.14-1.39]	Affymetrix, Illumina [NR] (imputed)	N
819	chr16	30700857	30700858	rs13338946	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	16p11.2	PRR14, SRCAP, RP11-146F11.1	rs13338946-C	0.28	6E-6		1.12	[NR]	Illumina [33000000] (imputed)	N
819	chr16	30700857	30700858	rs13338946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16p11.2		rs13338946-C	0.25977	6E-10		0.01603499	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
819	chr16	30700857	30700858	rs13338946	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	16p11.2	NR	rs13338946-C	0.26	1E-13		1.15		Illumina [up to 10291845] (imputed)	N
819	chr16	30704892	30704893	rs78382251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p11.2	NR	rs78382251-A	NR	2E-10		0.0233	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
819	chr16	30712987	30712987	rs113715277	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16p11.2	SRCAP	rs113715277-T	0.7085	1E-11		0.2026	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
819	chr16	30726247	30726248	rs8058578	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p11.2	SRCAP	rs8058578-?	NR	2E-6		1.11	[1.06-1.16]	Illumina [at least 5000000] (imputed)	N
819	chr16	30726247	30726248	rs8058578	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	16p11.2	Intergenic	rs8058578-T	0.304	1E-6		1.1	[NR]	Illumina [at least 7182761] (imputed)	N
819	chr16	30758742	30758743	rs72793380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16p11.2		rs72793380-A	NR	2E-8		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
819	chr16	30785823	30785824	rs11642862	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16p11.2	NR	rs11642862-?	NR	2E-6		0.0617	[0.036-0.087] unit increase	Illumina [at least 560000] (imputed)	N
820	chr16	30813454	30813454	rs534645300	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16p11.2	ZNF629	rs534645300-A	0.93	3E-9		0.814	[0.75-0.88]	Illumina [11270530] (imputed)	N
820	chr16	30813454	30813454	rs534645300	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	16p11.2	NR	rs534645300-AT	0.244012	8E-11		0.0214311	[0.015-0.028] unit increase	Affymetrix [16580851] (imputed)	N
820	chr16	30822518	30822519	rs5816513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16p11.2		rs5816513-C	0.736125	4E-11		0.017067978	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr16	30836647	30836648	rs8046391	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	16p11.2	NR	rs8046391-C	0.27218200000000004	9E-10		0.0170855	[0.012-0.023] unit increase	Affymetrix [16585745] (imputed)	N
820	chr16	30838127	30838128	rs28421305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16p11.2	RP11-2C24.5	rs28421305-A	0.272523	9E-11		0.016181763	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr16	30844545	30844546	rs8047664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs8047664-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
820	chr16	30846133	30846134	rs11864054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16p11.2		rs11864054-A	NR	3E-8		0.0303	[0.02-0.041] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
820	chr16	30846133	30846134	rs11864054	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16p11.2	BCL7C	rs11864054-G	0.385154	2E-9		0.034885284	[0.023-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
820	chr16	30870956	30870957	rs4889622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16p11.2		rs4889622-G	NR	4E-10		0.0164	[0.011-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
820	chr16	30875334	30875335	rs56142883	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	16p11.2		rs56142883-C	0.967	1E-8				Affymetrix [10369434] (imputed)	N
820	chr16	30877543	30877544	rs4889630	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16p11.2	BCL7C	rs4889630-T	0.19996	2E-12		0.0123539	[0.0089-0.0158] unit increase	Affymetrix [12370749]	N
820	chr16	30886642	30886643	rs897984	29263008	Guerreiro R	2018-01-01	Lancet Neurol	Investigating the genetic architecture of dementia with Lewy bodies: a two-stage genome-wide association study.	Dementia with Lewy bodies	1,216 European ancestry cases, 3,791 European ancestry controls	527 European ancestry cases, 663 European ancestry controls	16p11.2	BCL7C, STX1B	rs897984-?	0.6	1E-8		1.2987013	[1.18-1.41]	Illumina [8397716] (imputed)	N
820	chr16	30895544	30895545	rs4889651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p11.2	NR	rs4889651-G	NR	4E-19		0.0268	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
820	chr16	30895544	30895545	rs4889651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16p11.2	NR	rs4889651-G	NR	7E-12		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
820	chr16	30914625	30914626	rs1046276	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Juvenile myoclonic epilepsy	1,177 European ancestry cases, 4,218 European ancestry controls	NA	16p11.2	STX1B	rs1046276-T	0.34	3E-11		6.67	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
820	chr16	30914625	30914626	rs1046276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16p11.2	CTF1	rs1046276-C	0.6446	2E-9		0.02188859	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
820	chr16	30916232	30916233	rs8046707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16p11.2	CTF2P	rs8046707-A	0.380254	1E-14		0.017642785	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
820	chr16	30918486	30918487	rs11649653	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16p11.2	CTF1	rs11649653-G	0.4	2E-7		0.027	[NR] mg/dL decrease	NR [NR] (imputed)	N
820	chr16	30918486	30918487	rs11649653	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	16p11.2	CTF1	rs11649653-G	0.4	3E-8		2.13	[1.37-2.89] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
820	chr16	30928969	30928970	rs12924903	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	16p11.2	FBXL19, PRSS53	rs12924903-A	NR	9E-6		1.164	NR	Illumina [11532644] (imputed)	N
820	chr16	30930232	30930233	rs71383766	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	16p11.2	NR	rs71383766-T	0.419574	1E-9		0.012569	[0.0085-0.0166] unit increase	Affymetrix [16668957] (imputed)	N
820	chr16	30930232	30930233	rs71383766	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16p11.2		rs71383766-?	NR	2E-17		0.0178881	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
820	chr16	30930982	30930983	rs9319588	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	16p11.2		rs9319588-T	0.905764992	1E-8		0.7373254	[0.664427677-0.818221096]	Illumina [8919992] (imputed)	N
821	chr16	30936742	30936743	rs72799341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16p11.2		rs72799341-A	NR	2E-15		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
821	chr16	30936742	30936743	rs72799341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16p11.2		rs72799341-A	NR	1E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
821	chr16	30936742	30936743	rs72799341	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16p11.2	FBXL19	rs72799341-A	0.24	6E-9		0.185	[0.13-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
821	chr16	30936742	30936743	rs72799341	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p11.2	FBXL19	rs72799341-G		9E-6		0.132	unit increase	Affymetrix [at least 2696785] (imputed)	N
821	chr16	30936742	30936743	rs72799341	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16p11.2	FBXL19	rs72799341-G		4E-9		0.161	unit decrease	Affymetrix [at least 2696785] (imputed)	N
821	chr16	30937798	30937799	rs8050588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16p11.2		rs8050588-A	0.094671224	1E-8		0.27079466	[0.18-0.36] unit increase	Illumina [13429311] (imputed)	N
821	chr16	30942624	30942625	rs10782001	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	16p11.2	FBXL19, STX1B	rs10782001-C	NR	3E-7		1.167	[1.101-1.238]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
821	chr16	30942624	30942625	rs10782001	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	16p11.2	FBXL19, POL3S	rs10782001-G	0.37	9E-10		1.16	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
821	chr16	30943987	30943988	rs12928852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16p11.2	FBXL19	rs12928852-T	0.6251	2E-11		0.02393953	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
821	chr16	30948396	30948397	rs12917722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16p11.2		rs12917722-?	NR	1E-11				NR [~ 8900000] (imputed)	N
821	chr16	30956650	30956651	rs56193946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p11.2	NR	rs56193946-G	NR	3E-12		0.02	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
821	chr16	30960605	30960606	rs368110163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	16p11.2	ORAI3	rs368110163-A	9.86000000000042E-4	6E-9		0.29530644	[0.2-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr16	30967277	30967278	rs34067580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16p11.2	ORAI3, AC135048.13	rs34067580-A	0.624002	1E-10		0.01488358	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
821	chr16	30969485	30969486	rs11643872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16p11.2		rs11643872-T	NR	9E-10		0.2374	[0.16-0.31] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
821	chr16	30969556	30969557	rs62055866	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	16p11.2	PRR14	rs62055866-C	0.385043	3E-10		6.29	z score increase	NR [10847151] (imputed)	N
821	chr16	30970940	30970941	rs1870293	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16p11.2	SETD1A	rs1870293-?	NR	1E-10	(subset analysis)			Illumina [130052]	N
821	chr16	30977798	30977799	rs11150601	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16p11.2	SETD1A	rs11150601-A	0.6442	5E-20		0.0907	[0.071-0.11] unit increase	NR [7784415] (imputed)	N
821	chr16	30977798	30977799	rs11150601	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	16p11.2	SETD1A	rs11150601-G	0.32723	6E-6		0.1669	[0.095-0.239] unit decrease	Illumina [9911207] (imputed)	N
821	chr16	30984211	30984212	rs7204459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16p11.2		rs7204459-?	NR	1E-33				NR [~ 8900000] (imputed)	N
821	chr16	30987380	30987381	rs67517081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16p11.2	SETD1A	rs67517081-G	0.635774	3E-39		0.02996478	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
821	chr16	30987380	30987381	rs67517081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16p11.2	SETD1A	rs67517081-G	0.635702	9E-39		0.030180562	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr16	30987380	30987381	rs67517081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16p11.2	SETD1A	rs67517081-G	0.635737	3E-42		0.03177138	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr16	30987380	30987381	rs67517081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p11.2	SETD1A	rs67517081-G	0.635756	1E-35		0.0287537	[0.025-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr16	30987380	30987381	rs67517081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p11.2	SETD1A	rs67517081-G	0.635767	1E-38		0.029660273	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr16	30987380	30987381	rs67517081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p11.2	SETD1A	rs67517081-G	0.6203	2E-13		0.02491798	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
821	chr16	30993822	30993823	rs11150602	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16p11.2	SETD1A	rs11150602-G	NR	5E-6		1.0729614	NR	Affymetrix, Illumina [8278136] (imputed)	N
821	chr16	30999141	30999142	rs9938550	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	16p11.2	PRR14	rs9938550-A	0.384672	6E-9		5.81	z score decrease	NR [~ 10847151] (imputed)	N
821	chr16	31000808	31000809	rs13708	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	16p11.2	FBXL19	rs13708-G	0.35822	2E-8		1.19	[1.12-1.26]	Illumina [up to 4778154] (imputed)	N
821	chr16	31000808	31000809	rs13708	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	16p11.2	FBXL19	rs13708-G	0.079839	8E-7	(Chinese)	1.55	[1.3-1.85]	Illumina [up to 4778154] (imputed)	N
821	chr16	31002663	31002664	rs8062719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs8062719-?	NR	1E-35				NR [~ 8900000] (imputed)	N
821	chr16	31002719	31002720	rs8060857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs8060857-A	0.670045	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
821	chr16	31004168	31004169	rs17855121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16p11.2		rs17855121-C	NR	3E-8		0.0149	[0.0096-0.0202] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
821	chr16	31004811	31004812	rs12445568	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	16p11.2	intergenic	rs12445568-T	0.62232	4E-11		6.588	z score increase	Illumina [18485882] (imputed)	N
821	chr16	31004811	31004812	rs12445568	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	16p11.2	PRSS53, FBXL19	rs12445568-C	NR	5E-11		1.159	NR	Illumina [up to 11532644] (imputed)	N
821	chr16	31004811	31004812	rs12445568	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	16p11.2	PRSS53, FBXL19	rs12445568-C	0.368	1E-16		1.16		Illumina [111236] (imputed)	N
821	chr16	31006971	31006972	rs2199036	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs2199036-T	NR	5E-10		1.07	NR	NR [8016731] (imputed)	N
821	chr16	31006971	31006972	rs2199036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA			rs2199036-?	NR	2E-9				NR [~ 8900000] (imputed)	N
821	chr16	31006971	31006972	rs2199036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA			rs2199036-?	NR	9E-15				NR [~ 8900000] (imputed)	N
821	chr16	31006971	31006972	rs2199036	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA		Intergenic	rs2199036-T	0.3671	2E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
821	chr16	31011182	31011183	rs4889606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16p11.2		rs4889606-?	NR	4E-26				NR [~ 8900000] (imputed)	N
821	chr16	31011182	31011183	rs4889606	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	STX1B2	rs4889606-A	0.6099	9E-9	(EA)	0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
821	chr16	31011182	31011183	rs4889606	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	STX1B2	rs4889606-A	0.6099	3E-6	(EA, men)	0.0233	[0.013-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
821	chr16	31011820	31011821	rs12716979	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	16p11.2	STX1B	rs12716979-?	NR	1E-16				NR [5554549] (imputed)	N
821	chr16	31011820	31011821	rs12716979	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	16p11.2	STX1B	rs12716979-?	NR	7E-24				NR [5554549] (imputed)	N
821	chr16	31012780	31012781	rs12920772	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16p11.2	STX1B	rs12920772-?	NR	8E-11		0.0174	[0.013-0.022] unit increase	Affymetrix [5701386] (imputed)	N
821	chr16	31015876	31015877	rs55908605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16p11.2		rs55908605-?	NR	7E-9				NR [~ 8900000] (imputed)	N
821	chr16	31015998	31015999	rs36004598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16p11.2		rs36004598-T	NR	9E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
821	chr16	31021879	31021880	rs140820592	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	16p11.2	STX1B	rs140820592-T		1E-8		0.0859	[0.056-0.115] unit decrease	Illumina [NR]	N
821	chr16	31025640	31025641	rs34898535	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	16p11.2		rs34898535-C	0.62	3E-15		0.015	mmol/L increase	NR [NR] (imputed)	N
821	chr16	31025640	31025641	rs34898535	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16p11.2		rs34898535-C	0.62	3E-29				NR [NR] (imputed)	N
821	chr16	31025640	31025641	rs34898535	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	16p11.2		rs34898535-C	0.62	3E-8		0.01	mmol/L decrease	NR [NR] (imputed)	N
821	chr16	31025640	31025641	rs34898535	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16p11.2		rs34898535-C	0.62	1E-21		0.015	% increase	NR [NR] (imputed)	N
821	chr16	31025640	31025641	rs34898535	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	16p11.2	STX1B	rs34898535-C	NR	3E-8		0.00706068	[0.0045-0.0096] unit decrease	Affymetrix [10061374] (imputed)	N
821	chr16	31025640	31025641	rs34898535	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16p11.2	STX1B	rs34898535-C	0.622254	5E-24		0.0143098	[0.012-0.017] unit increase	Affymetrix [12370749]	N
821	chr16	31025640	31025641	rs34898535	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	16p11.2	STX1B	rs34898535-?	NR	1E-11				NR [5554549] (imputed)	N
821	chr16	31025640	31025641	rs34898535	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	16p11.2	STX1B	rs34898535-?	NR	6E-22				NR [5554549] (imputed)	N
821	chr16	31025640	31025641	rs34898535	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	16p11.2	STX1B	rs34898535-?	NR	3E-12				NR [5554549] (imputed)	N
821	chr16	31025640	31025641	rs34898535	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	16p11.2	STX1B	rs34898535-?	NR	2E-27				NR [5554549] (imputed)	N
821	chr16	31026426	31026427	rs4889609	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	16p11.2	STX1B, STX4, ZNF668	rs4889609-?	NR	9E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
821	chr16	31030343	31030344	rs4889526	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	16p11.2	NR	rs4889526-A		6E-11		1.07		NR [8016731] (imputed)	N
821	chr16	31047821	31047822	rs148753960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16p11.2		rs148753960-T	NR	1E-8		0.0679	[0.045-0.091] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
821	chr16	31047821	31047822	rs148753960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16p11.2		rs148753960-?	NR	1E-9				NR [~ 8900000] (imputed)	N
821	chr16	31048078	31048079	rs10871454	18535201	Cooper GM	2008-06-05	Blood	A genome-wide scan for common genetic variants with a large influence on warfarin maintenance dose.	Warfarin maintenance dose	181 European ancestry individuals	374 European ancestry individuals	16p11.2	VKORC1	rs10871454-?	NR	5E-34				Illumina [538629]	N
821	chr16	31050032	31050033	rs732172	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	16p11.2	NR	rs732172-T	0.3709	1E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
821	chr16	31054039	31054040	rs2288004	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16p11.2	STX4	rs2288004-G	0.618373	7E-13		0.0146939	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
821	chr16	31054039	31054040	rs2288004	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p11.2	NR	rs2288004-G	0.619179	3E-16		0.0090496	[0.0067-0.0114] unit increase	Affymetrix [16582621] (imputed)	N
821	chr16	31054039	31054040	rs2288004	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16p11.2	NR	rs2288004-G	0.619179	1E-8		0.00701434	[0.0045-0.0095] unit increase	Affymetrix [16582614] (imputed)	N
822	chr16	31070480	31070481	rs56813533	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16p11.2	NR	rs56813533-T	0.374	6E-13		0.0184809	[0.013-0.024] unit decrease	Affymetrix [10549349] (imputed)	N
822	chr16	31077408	31077409	rs9927295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16p11.2	Intergenic	rs9927295-A	0.2284	2E-9	(MTAG)	0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
822	chr16	31088346	31088347	rs749671	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	16p11.2	NR	rs749671-?		3E-12		0.015654	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
822	chr16	31088346	31088347	rs749671	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	16p11.2	VKORC1	rs749671-G		1E-33	(Brazilian)	20.4	[14.3-29.0]	Affymetrix [> 650000] (imputed)	N
822	chr16	31088624	31088625	rs749670	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16p11.2	ZNF646	rs749670-A	0.6239	7E-14		0.0148	[0.011-0.019] unit increase	Illumina [246328]	N
822	chr16	31091208	31091209	rs3751855	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	16p11.2	NR	rs3751855-C	NR	1E-8		0.01391	[0.0091-0.0187] unit decrease	Affymetrix [10847151] (imputed)	N
822	chr16	31091208	31091209	rs3751855	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16p11.2	NR	rs3751855-T	NR	1E-11		6.788	z score increase	Affymetrix [10847151] (imputed)	N
822	chr16	31091208	31091209	rs3751855	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	16p11.2	NR	rs3751855-T	0.393888	4E-10		6.25	z score increase	NR [10847151] (imputed)	N
822	chr16	31091208	31091209	rs3751855	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	16p11.2	CCDC189	rs3751855-T	0.393888	2E-8		5.64	z score increase	NR [10847151] (imputed)	N
822	chr16	31095170	31095171	rs11865038	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	16p11.2	POL3S	rs11865038-?	NR	4E-7		1.14	[NR]	Illumina [2500000] (imputed)	N
822	chr16	31095250	31095251	rs11864839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16p11.2	Intergenic	rs11864839-G	0.6198	5E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
822	chr16	31099010	31099011	rs11150606	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	16p11.2	PRSS53	rs11150606-?	NR	7E-9				Illumina [9143600] (imputed)	N
822	chr16	31104508	31104509	rs8050894	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	POL3S, VKORC1, ZNF646, ZNF668	rs8050894-G	0.376412	4E-15	(males)	0.006063	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
822	chr16	31104508	31104509	rs8050894	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	POL3S, VKORC1, ZNF646, ZNF668	rs8050894-G	0.376412	3E-15		0.01728	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
822	chr16	31104508	31104509	rs8050894	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16p11.2	POL3S, VKORC1, ZNF646, ZNF668	rs8050894-G	0.376412	1E-14	(females)	0.02728	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
822	chr16	31104877	31104878	rs9934438	34729928	El Rouby N	2021-11-02	Clin Transl Sci	Genomewide association analysis of warfarin dose requirements in Middle Eastern and North African populations.	Warfarin dose variability	132 Arab ancestry individuals	50 Egyptian ancestry individuals	16p11.2		rs9934438-A	NR	8E-15		0.16	decrease	Illumina [1132000]	N
822	chr16	31105352	31105353	rs17708472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16p11.2	NR	rs17708472-A	NR	1E-9		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
822	chr16	31107688	31107689	rs9923231	20833655	Cha PC	2010-09-10	Hum Mol Genet	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 Japanese ancestry low dose individuals, 701 Japanese ancestry high dose individuals	444 Japanese ancestry individuals	16p11.2	VKORC1	rs9923231-?	NR	9E-31				Illumina [485227]	N
822	chr16	31107688	31107689	rs9923231	19300499	Takeuchi F	2009-03-20	PLoS Genet	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	16p11.2	VKORC1	rs9923231-T	0.40	3E-181		0.97	[0.91-1.02] mg/week decrease	Illumina [325997]	N
822	chr16	31109287	31109287	rs59502288	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	16p11.2	NR	rs59502288-G	NR	2E-6		0.00664	[0.0039-0.0094] unit decrease	NR [11010159] (imputed)	N
822	chr16	31109287	31109287	rs59502288	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	16p11.2	NR	rs59502288-G	NR	9E-10		0.00672921	[0.0046-0.0089] unit decrease	NR [11010159] (imputed)	N
822	chr16	31109287	31109287	rs59502288	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	16p11.2	NR	rs59502288-G	NR	1E-6	(adjusted for BMI)	0.00521	[0.0031-0.0073] unit decrease	NR [11010159] (imputed)	N
822	chr16	31110980	31110981	rs7196161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16p11.2		rs7196161-A	NR	2E-8		0.0319	[0.021-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
822	chr16	31114909	31114910	rs62057090	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16p11.2	BCKDK	rs62057090-G	0.36828899	4E-15		0.260863	[0.2-0.33] unit decrease	Affymetrix [9463307] (imputed)	N
822	chr16	31114909	31114910	rs62057090	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	16p11.2	BCKDK	rs62057090-G	0.36828899	4E-6		0.0103555	[0.006-0.0147] unit decrease	Affymetrix [9463307] (imputed)	N
822	chr16	31114909	31114910	rs62057090	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	16p11.2	BCKDK	rs62057090-G	0.36828899	5E-6		0.233566	[0.13-0.33] unit decrease	Affymetrix [9463307] (imputed)	N
822	chr16	31115258	31115259	rs375452507	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs375452507-T	0.377016	1E-13		0.0688233	[0.05-0.087] decrease	Affymetrix [11014269] (imputed)	N
822	chr16	31117412	31117413	rs2032915	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	16p11.2	CTF1	rs2032915-T	0.396	9E-9	(Trans-ethnic initial)	0.0211	[0.014-0.028] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
822	chr16	31121792	31121793	rs14235	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	16p11.2	ZNF646, KAT8	rs14235-A	0.378	5E-12		1.08	[1.06-1.10]	Illumina [11933700] (imputed)	N
822	chr16	31121792	31121793	rs14235	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	16p11.2	BCKDK, STX1B	rs14235-A	0.381	2E-12		1.103	[1.08-1.13]	Illumina [7893274] (imputed)	N
822	chr16	31122570	31122571	rs889555	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	16p11.2	NR	rs889555-?	NR	3E-8		1.0526316		Affymetrix [7795605] (imputed)	N
822	chr16	31129894	31129895	rs9925964	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16p11.2	NR	rs9925964-A	NR	2E-13		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
822	chr16	31129894	31129895	rs9925964	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	MYST1	rs9925964-A	0.6332	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
822	chr16	31129894	31129895	rs9925964	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16p11.2	MYST1	rs9925964-A	0.6332	2E-6		0.0183	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
822	chr16	31129894	31129895	rs9925964	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16p11.2	MYST1	rs9925964-A	0.6332	5E-8		0.0185	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
822	chr16	31129894	31129895	rs9925964	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16p11.2	NR	rs9925964-A	0.619057790126741	7E-13		0.019869572	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
822	chr16	31129894	31129895	rs9925964	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	KAT8	rs9925964-A	0.623	9E-11		0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
822	chr16	31129894	31129895	rs9925964	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	KAT8	rs9925964-A	0.62	8E-10	(EA)	0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
822	chr16	31129894	31129895	rs9925964	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16p11.2	KAT8	rs9925964-A	0.62	2E-6	(EA, women)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
822	chr16	31133099	31133100	rs59735493	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	16p11.2	KAT8	rs59735493-A	NR	4E-6		4.627	NR z-score decrease	Affymetrix [10847151] (imputed)	N
822	chr16	31133099	31133100	rs59735493	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	16p11.2	KAT8	rs59735493-A	0.3	4E-8		5.49	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
822	chr16	31133099	31133100	rs59735493	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	16p11.2	NR	rs59735493-A	NR	2E-8		0.01492	[0.0097-0.0201] unit decrease	Affymetrix [10847151] (imputed)	N
822	chr16	31134058	31134059	rs61320757	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16p11.2		rs61320757-A	0.28	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
822	chr16	31136066	31136066	rs138259061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16p11.2		rs138259061-AAAAG	NR	7E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
822	chr16	31136066	31136066	rs138259061	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16p11.2	MYST1, KAT8	rs138259061-?	NR	3E-9		0.0163	[0.011-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
822	chr16	31141992	31141993	rs1549293	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16p11.2	PRSS8/MYST1	rs1549293-T	0.3791	7E-9	(EA)	0.0201	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
822	chr16	31149141	31149142	rs9972727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16p11.2		rs9972727-?	NR	1E-12				NR [~ 8900000] (imputed)	N
822	chr16	31149754	31149755	rs112766425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p11.2	NR	rs112766425-G	NR	2E-9		0.0313	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
822	chr16	31151520	31151521	rs8047469	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	16p11.2	VKORC1, BCKDK, KAT8, PRSS8, PRSS36, FUS	rs8047469-G	0.879	8E-6		1.133029		NR [9372253] (imputed)	N
822	chr16	31151520	31151521	rs8047469	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	16p11.2	VKORC1, BCKDK, KAT8, PRSS8, PRSS36, FUS	rs8047469-G	0.878	5E-7		1.1792731	[NR]	NR [9372253] (imputed)	N
822	chr16	31158646	31158647	rs28385574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p11.2	NR	rs28385574-T	NR	2E-11		0.0259	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
822	chr16	31165794	31165795	rs57611503	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16p11.2		rs57611503-G	0.485	4E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [up to 90000000] (imputed)	N
822	chr16	31166027	31166028	rs12102776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p11.2	NR	rs12102776-C	NR	7E-10		0.0167	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
822	chr16	31166027	31166028	rs12102776	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p11.2	NR	rs12102776-C	NR	4E-18		0.0225	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
822	chr16	31171490	31171491	rs148758034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p11.2		rs148758034-?	NR	9E-11				NR [~ 8900000] (imputed)	N
822	chr16	31185881	31185882	rs57348955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16p11.2	NR	rs57348955-A	NR	3E-15		0.0215	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
822	chr16	31185881	31185882	rs57348955	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16p11.2	FUS	rs57348955-G	0.609801	7E-9		0.0113912	[0.0075-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
822	chr16	31185881	31185882	rs57348955	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	16p11.2	ITGAM	rs57348955-G	0.604	4E-8		1.2048193	[1.12-1.30]	Illumina [103875]	N
822	chr16	31185881	31185882	rs57348955	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	16p11.2	ITGAM	rs57348955-G	0.604	5E-8		1.1904762	[1.12-1.27]	Illumina [103875]	N
823	chr16	31213180	31213181	rs186112291	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p11.2	PYCARD	rs186112291-T	0.999	1E-6	(AA)	1.388	NR unit increase	Illumina [NR] (imputed)	N
823	chr16	31261855	31261856	rs138250198	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p11.2	Intergenic	rs138250198-T	0.998	2E-6	(AA)	1.315	NR unit increase	Illumina [NR] (imputed)	N
823	chr16	31271062	31271063	rs7193943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16p11.2	NR	rs7193943-A	NR	2E-15		0.0203	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
823	chr16	31272352	31272353	rs34572943	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p11.2	ITGAM	rs34572943-?	NR	9E-85		1.68	[1.59-1.78]	Illumina [at least 5000000] (imputed)	N
823	chr16	31272352	31272353	rs34572943	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	16p11.2	ITGAM	rs34572943-A		3E-76		1.71	[1.61-1.81]	Illumina [644674]	N
823	chr16	31273661	31273662	rs79113991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16p11.2		rs79113991-T	0.895832	3E-8		0.0379393	[0.025-0.051] unit decrease	NR [11722792] (imputed)	N
823	chr16	31276810	31276811	rs1143679	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	16p11.2	ITGAM	rs1143679-A	0.07	6E-8		1.9136	[NR]	Illumina [421909] (imputed)	N
823	chr16	31276810	31276811	rs1143679	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p11.2	ITGAM	rs1143679-?	NR	2E-13	(AA)	1.54	[1.37-1.73]	Illumina [at least 5000000] (imputed)	N
823	chr16	31276810	31276811	rs1143679	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	16p11.2	ITGAM	rs1143679-?	NR	3E-62		1.72	[1.61-1.83]	Illumina [at least 5000000] (imputed)	N
823	chr16	31276810	31276811	rs1143679	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	16p11.2	ITGAM	rs1143679-?	0.12	5E-48	(EA)	1.78	[NR]	NR [6344733] (imputed)	N
823	chr16	31276810	31276811	rs1143679	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	16p11.2	ITGAM	rs1143679-A	0.071	3E-21		2.3	[1.97-2.70]	Illumina [580483] (imputed)	N
823	chr16	31281405	31281405	rs775029448	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16p11.2		rs775029448-CCTT	0.895628	3E-8		0.0371104	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
823	chr16	31282009	31282009	rs200125675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16p11.2		rs200125675-C	0.194513	1E-8		0.0302108	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
823	chr16	31283322	31283323	rs35472514	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	16p11.2	ITGAM	rs35472514-G		4E-53		1.7	[NR]	Illumina [> 644674] (imputed)	N
823	chr16	31283995	31283996	rs12928725	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16p11.2	ITGAM	rs12928725-?	NR	7E-22	(Hispanic)	1.94	[1.70-2.23]	Illumina [at least 5000000] (imputed)	N
823	chr16	31298938	31298939	rs9937837	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	16p11.2	ITGAM	rs9937837-G	0.02	7E-6		1.86		Illumina [2100739] (imputed)	N
823	chr16	31313252	31313253	rs9888739	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	16p11.2	ITGAM	rs9888739-T	0.13	4E-11		1.638	[1.512-1.78]	Illumina [NR]	N
823	chr16	31313252	31313253	rs9888739	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	16p11.2	ITGAM	rs9888739-T	0.13	1E-15	(anti-dsDNA +)	1.8	[1.56-2.07]	Illumina [421318] (imputed)	N
823	chr16	31313252	31313253	rs9888739	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	16p11.2	ITGAM	rs9888739-T	0.13	2E-23		1.62	[1.47-1.78]	Illumina [317501]	N
824	chr16	31326705	31326706	rs11860650	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	16p11.2	ITGAM	rs11860650-?	NR	1E-10		1.319	[NR]	Illumina [NR]	N
824	chr16	31326705	31326706	rs11860650	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	16p11.2	ITGAM	rs11860650-T	0.13	2E-20		1.43	[1.32-1.54]	Illumina [~ 2100000] (imputed)	N
824	chr16	31331957	31331958	rs7192161	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16p11.2	ITGAM	rs7192161-C	0.586851	2E-9		0.0119715	[0.0081-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
824	chr16	31334192	31334193	rs188316112	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs188316112-A	0.00828	2E-9		0.9407	[0.64-1.24] unit decrease	Illumina [17926605] (imputed)	N
824	chr16	31334192	31334193	rs188316112	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs188316112-A	0.00828	3E-9		0.9211	[0.62-1.22] unit decrease	Illumina [17926605] (imputed)	N
824	chr16	31334235	31334236	rs11150610	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	16p11.2	ITGAM	rs11150610-?	0.42	2E-6			[NR]	Affymetrix [313238]	N
824	chr16	31343768	31343769	rs4597342	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16p11.2	ITGAM	rs4597342-?	NR	6E-11	(TG_PG)	0.03981358	NR unit increase	Illumina [609262]	N
824	chr16	31347591	31347592	rs9673404	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs9673404-T	0.38479	1E-10		0.1893	[0.13-0.25] unit decrease	Illumina [17926605] (imputed)	N
824	chr16	31347747	31347748	rs3925075	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	16p11.2	intergenic	rs3925075-?	NR	5E-6		1.15	[1.09-1.23]	Illumina [444882]	N
824	chr16	31357759	31357760	rs11150612	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	16p11.2	ITGAX-ITGAM	rs11150612-A	0.6765692216552797	5E-6	(East Asian)	1.1907115	[1.10482834167314-1.28327066246977]	NR [3611808] (imputed)	N
824	chr16	31357759	31357760	rs11150612	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	16p11.2	ITGAM, ITGAX	rs11150612-A	0.36	1E-8	(EA)	1.19	[NR]	Illumina [> 1000000] (imputed)	N
824	chr16	31357759	31357760	rs11150612	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	16p11.2	ITGAM, ITGAX	rs11150612-A	0.36	1E-11		1.18	[NR]	Illumina [> 1000000] (imputed)	N
824	chr16	31361987	31361988	rs4493054	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs4493054-A	0.7365999999999999	2E-9		0.1971	[0.13-0.26] unit increase	Illumina [17926605] (imputed)	N
824	chr16	31361987	31361988	rs4493054	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on CD62L+ myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs4493054-A	0.7365999999999999	1E-32		0.3611	[0.3-0.42] unit increase	Illumina [17926605] (imputed)	N
824	chr16	31362710	31362711	rs67898294	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs67898294-T	0.35045	7E-31		0.3276	[0.27-0.38] unit increase	Illumina [17926605] (imputed)	N
824	chr16	31365463	31365464	rs7199570	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs7199570-A	0.50542	8E-27		0.2991	[0.24-0.35] unit increase	Illumina [17914520] (imputed)	N
824	chr16	31368177	31368178	rs7190997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16p11.2	NR	rs7190997-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
824	chr16	31368177	31368178	rs7190997	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16p11.2	NA	rs7190997-T	0.4769	3E-18		0.0142	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
824	chr16	31368177	31368178	rs7190997	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	16p11.2	ITGAX-ITGAM	rs7190997-C	0.692	2E-19		1.223	[1.171-1.278]	Illumina [3792949] (imputed)	N
824	chr16	31368873	31368874	rs11574637	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	16p11.2	ITGAM, ITGAX	rs11574637-T	0.82	8E-13	(EA)	1.32	[NR]	Illumina [> 1000000] (imputed)	N
824	chr16	31368873	31368874	rs11574637	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	16p11.2	ITGAM, ITGAX	rs11574637-C	0.19	3E-11		1.33	[1.22-1.46]	Illumina [502033]	N
824	chr16	31379354	31379355	rs8046381	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs8046381-C	0.86681	1E-29		0.4684	[0.39-0.55] unit increase	Illumina [17914520] (imputed)	N
824	chr16	31384126	31384127	rs149808359	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p11.2	ITGAX	rs149808359-G	0.998	1E-7	(AA)	1.447	NR unit increase	Illumina [NR] (imputed)	N
824	chr16	31396891	31396892	rs139875745	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p11.2	Intergenic	rs139875745-G	0.998	7E-8	(AA)	1.381	NR unit increase	Illumina [NR] (imputed)	N
824	chr16	31404570	31404571	rs8050500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p11.2		rs8050500-C	NR	2E-28		0.0226	[0.019-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
824	chr16	31404570	31404571	rs8050500	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16p11.2	ITGAD	rs8050500-T	0.5595	2E-6		0.0069	[0.0042-0.0096] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445606	2E-19		0.02032838	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445599	1E-15		0.0180355	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445681	2E-32		0.026472222	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445825	3E-10		0.0143521605	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445834	2E-14		0.017309975	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445589	1E-16		0.018580638	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16p11.2	ITGAD	rs8050500-C	0.445596	6E-14		0.016833054	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs8050500-T	0.553423	9E-40				Affymetrix, Illumina [22063850] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16p11.2	NR	rs8050500-T	0.554372	5E-41		0.025696	[0.022-0.029] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs8050500-C	0.472826	2E-20				Affymetrix, Illumina [24588908] (imputed)	N
824	chr16	31404570	31404571	rs8050500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16p11.2	NR	rs8050500-C	0.44526	1E-21		0.017875	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
824	chr16	31404570	31404571	rs8050500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16p11.2		rs8050500-?	NR	3E-40				NR [~ 8900000] (imputed)	N
824	chr16	31404570	31404571	rs8050500	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16p11.2	NR	rs8050500-C	NR	1E-14		0.0298409	[0.022-0.038] unit decrease	Affymetrix [16832071] (imputed)	N
824	chr16	31404570	31404571	rs8050500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	16p11.2	ITGAD	rs8050500-C	0.4457	5E-19		0.03163143	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr16	31405735	31405736	rs62051538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16p11.2	ITGAD	rs62051538-G	0.2082	1E-11		0.0295668	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
824	chr16	31435366	31435367	rs201938902	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16p11.2	SLC5A2	rs201938902-G	0.3128	1E-11		1.173	[1.12-1.22]	Illumina [32500000] (imputed)	N
824	chr16	31435366	31435367	rs201938902	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16p11.2	SLC5A2	rs201938902-G	0.3128	2E-13		1.142	[1.10-1.18]	Illumina [32500000] (imputed)	N
825	chr16	31461819	31461820	rs75516957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p11.2	RP11-452L6.1	rs75516957-C	0.148396	8E-9		0.024751	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr16	31464077	31464078	rs1135265	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16p11.2	TGFB1I1	rs1135265-?	NR	4E-6	(pyruvate)	0.2138933	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
825	chr16	31478710	31478711	rs13337037	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (maternal genotype effect)	1,249 European ancestry cases, 5,140 European ancestry controls	NA	16p11.2	NR	rs13337037-A	0.284238	2E-13		1.42193	[1.29523-1.56103]	Illumina [9323831] (imputed)	N
825	chr16	31478710	31478711	rs13337037	32227112	Lee MA	2020-03-30	Hum Mol Genet	Common variation at 16p11.2 is associated with glycosuria in pregnancy: Findings from a genome-wide association study in European women.	Glycosuria in pregnancy (maternal and offspring genotype effect)	1,996 European ancestry cases, 8,131 European ancestry controls	NA	16p11.2	NR	rs13337037-A	0.2742	5E-15		7.833	NR z score increase	Illumina [up to 9873828] (imputed)	N
825	chr16	31499957	31499958	rs141627694	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16p11.2	SLC5A2	rs141627694-C	0.00101	1E-9		4.157	[2.62-6.60]	Illumina [32500000] (imputed)	N
825	chr16	31499957	31499958	rs141627694	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (mild)	4,748 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16p11.2	SLC5A2	rs141627694-C	0.0010	6E-9		4.13	[2.56-6.65]	Illumina [32500000] (imputed)	N
825	chr16	31499957	31499958	rs141627694	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16p11.2	SLC5A2	rs141627694-C	0.00101	5E-15		4.165	[2.92-5.96]	Illumina [32500000] (imputed)	N
825	chr16	31518205	31518206	rs8047112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	16p11.2		rs8047112-T	NR	9E-9		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
825	chr16	31518205	31518206	rs8047112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16p11.2	C16orf58	rs8047112-T	0.144029	1E-11		0.0207768	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr16	31518205	31518206	rs8047112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16p11.2	NR	rs8047112-T	0.155721	4E-12				Affymetrix, Illumina [21126107] (imputed)	N
825	chr16	31518205	31518206	rs8047112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16p11.2	NR	rs8047112-T	0.143423	7E-13		0.020593	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
825	chr16	31519994	31519995	rs11866003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p11.2	RP11-452L6.7	rs11866003-T	0.162435	7E-15		0.023209456	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr16	31519994	31519995	rs11866003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs11866003-?	NR	2E-24				NR [~ 8900000] (imputed)	N
825	chr16	31525627	31525628	rs145996888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16p11.2	Intergenic	rs145996888-T	0.998	2E-6	(AA)	1.255	NR unit increase	Illumina [NR] (imputed)	N
825	chr16	31554355	31554356	rs553701682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16p11.2	VN1R64P	rs553701682-G	3.88000000000055E-4	4E-12		0.358365	[0.25-0.46] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr16	31554355	31554356	rs553701682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16p11.2	VN1R64P	rs553701682-G	3.88999999999973E-4	2E-13		0.4170692	[0.31-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
832	chr16	32480923	32480924	rs13380637	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	16p11.2	intergenic	rs13380637-?	NR	5E-6	(SF4)			Affymetrix [5476100] (imputed)	N
835	chr16	32877435	32877436	rs1820772	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p11.2	NR	rs1820772-?	NR	2E-7	(Japanese)	0.6803	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
841	chr16	33616740	33616741	rs241916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16p11.2		rs241916-T	NR	1E-8		0.0289	[0.019-0.039] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
843	chr16	33836509	33836510	rs9674439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16p11.2		rs9674439-?	NR	2E-10				NR [~ 8900000] (imputed)	N
843	chr16	33940199	33940200	rs7500645	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16p11.2	NR	rs7500645-?	NR	9E-18				Affymetrix [NR]	N
844	chr16	34020715	34020716	rs573635749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16p11.2	NR	rs573635749-A	0.999611	3E-10		0.411871	[0.28-0.54] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
846	chr16	34230251	34230252	rs139677804	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16p11.2	JB175072, UBE2MP1	rs139677804-C	0.974697	1E-10	(propyl 4-hydroxybenzoate sulfate)	0.501	[0.35-0.65] unit decrease	Illumina [13039987] (imputed)	N
846	chr16	34230251	34230252	rs139677804	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16p11.2	JB175072, UBE2MP1	rs139677804-C	0.974697	1E-10	(propyl 4-hydroxybenzoate sulfate)	0.501	[0.35-0.65] unit decrease	Illumina [13039987] (imputed)	N
846	chr16	34232837	34232838	rs192863373	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs192863373-A	0.00536	2E-9		1.037	[0.7-1.37] unit decrease	Illumina [18238311] (imputed)	N
846	chr16	34232837	34232838	rs192863373	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	16p11.2		rs192863373-A	0.00536	9E-9		0.9886	[0.65-1.33] unit decrease	Illumina [18234782] (imputed)	N
846	chr16	34249600	34249601	rs79879002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16p11.2		rs79879002-?	NR	3E-8				NR [~ 8900000] (imputed)	N
847	chr16	34362143	34362144	rs12931235	32961455	Song W	2020-09-15	Drug Alcohol Depend	Genome-wide association analysis of opioid use disorder: A novel approach using clinical data.	Opioid use disorder vs exposed controls	1,039 European ancestry cases, 10,744 European ancestry controls	NA	16p11.2	NR	rs12931235-T	NR	7E-10		0.724	NR	Illumina [5508534] (imputed)	N
847	chr16	34377823	34377824	rs190542424	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p11.2	NR	rs190542424-?	NR	4E-7	(EA)	1.3492	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
848	chr16	34498024	34498025	rs12599106	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	16p11.2	UBE2MP1	rs12599106-A	0.51	3E-8		0.12	[0.081-0.159] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
848	chr16	34528182	34528183	rs34349606	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	16p11.2	NR	rs34349606-C	0.03	3E-7	(EA)	1.66	[1.37-2.02]	Affymetrix [7469170] (imputed)	N
848	chr16	34599724	34599725	rs148082013	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16p11.1	NR	rs148082013-G	0.99548	1E-9		0.0560695	[0.037-0.075] unit increase	Affymetrix [16582621] (imputed)	N
848	chr16	34599724	34599725	rs148082013	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16p11.1	NR	rs148082013-G	0.99548	1E-7		0.0536306	[0.033-0.074] unit increase	Affymetrix [16582614] (imputed)	N
849	chr16	34682192	34682193	rs62057608	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16p11.1	TP53TG3B	rs62057608-A	0.028	4E-6	(Diet fat )	0.03	[NR] g/d increase	Illumina [899892]	N
849	chr16	34695305	34695306	rs237994	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16p11.1	NR	rs237994-A	0.114	7E-6	(IFNgamma_CXCL10_of_Monocytes)			Illumina [5084123] (imputed)	N
850	chr16	34850617	34850618	rs149133508	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16p11.1	NR	rs149133508-?	NR	5E-7	(EA)	1.4324	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
851	chr16	34969258	34969259	rs17841547	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	16p11.1	intergenic	rs17841547-G	0.063	8E-16		0.38	[0.29-0.48] unit decrease	Affymetrix [339439]	N
851	chr16	34969522	34969523	rs116934984	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16p11.1	NR	rs116934984-C	0.994483	5E-13		0.0442387	[0.031-0.057] unit increase	Affymetrix [16582909] (imputed)	N
851	chr16	34969522	34969523	rs116934984	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16p11.1	NR	rs116934984-C	0.994483	2E-8		0.0376003	[0.023-0.052] unit increase	Affymetrix [16582965] (imputed)	N
852	chr16	35088130	35088131	rs12599426	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		16p11.1	LOC729355	rs12599426-T	NR	3E-6		0.0243	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
853	chr16	35221551	35221552	rs34203782	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	16p11.1	NR	rs34203782-A	0.03	2E-6	(EA)	1.6	[1.32-1.94]	Affymetrix [7469170] (imputed)	N
941	chr16	46752433	46752434	rs8053204	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	16q11.2		rs8053204-C	0.45	1E-10		0.09	unit decrease	Illumina [2093892] (imputed)	N
941	chr16	46752433	46752434	rs8053204	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	16q11.2		rs8053204-C	0.45	4E-11		0.1	unit decrease	Illumina [2398641] (imputed)	N
942	chr16	46860364	46860365	rs118067990	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	16q11.2	NR	rs118067990-T	0.0428	3E-6		0.6567	[0.38-0.93] unit increase	Illumina [NR] (imputed)	N
942	chr16	46875261	46875262	rs111475141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q11.2		rs111475141-G	NR	7E-9		0.0369	[0.024-0.049] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
942	chr16	46920922	46920923	rs76575122	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	16q11.2	NR	rs76575122-C	0.04	7E-6	(EA)	1.51	[1.26-1.81]	Affymetrix [7469170] (imputed)	N
943	chr16	47037868	47037869	rs113773825	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	16q12.1	DNAJA2	rs113773825-A	0.97	7E-7		0.079	[0.048-0.11] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
944	chr16	47083952	47083953	rs80147136	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		16q12.1	intergenic	rs80147136-?	NR	2E-8	(AA)	0.071	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
945	chr16	47314027	47314028	rs185073832	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q12.1	NR	rs185073832-C	0.997815	8E-14		0.0855736	[0.062-0.109] unit increase	Affymetrix [16582909] (imputed)	N
945	chr16	47314027	47314028	rs185073832	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q12.1	NR	rs185073832-C	0.997792	4E-12		0.111026	[0.079-0.143] unit increase	Affymetrix [16582621] (imputed)	N
945	chr16	47314027	47314028	rs185073832	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q12.1	NR	rs185073832-C	0.997815	9E-10		0.0780782	[0.052-0.104] unit increase	Affymetrix [16582965] (imputed)	N
945	chr16	47314027	47314028	rs185073832	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q12.1	NR	rs185073832-C	0.997792	6E-10		0.106145	[0.073-0.14] unit increase	Affymetrix [16582614] (imputed)	N
946	chr16	47345090	47345091	rs7499413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q12.1		rs7499413-?	NR	5E-11				NR [~ 8900000] (imputed)	N
947	chr16	47550307	47550308	rs116923583	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	16q12.1	NR	rs116923583-C	0.03	1E-7	(EA)	1.65	[1.37-1.98]	Affymetrix [7469170] (imputed)	N
947	chr16	47560132	47560133	rs111617804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q12.1		rs111617804-C	NR	9E-9		0.0335	[0.022-0.045] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
949	chr16	47743517	47743518	rs201563658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q12.1		rs201563658-C	0.052597	2E-9		0.031541694	[0.021-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
949	chr16	47800858	47800862	rs559401098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q12.1	RP11-523L20.2	rs559401098-T	0.044518	2E-10		0.0344285	[0.024-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr16	47888096	47888097	rs73536729	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q12.1	LINC02133	rs73536729-A	0.959098	8E-12		0.00393068	[0.0028-0.0051] unit increase	Affymetrix [13995440] (imputed)	N
951	chr16	47980266	47980267	rs16945716	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q12.1	NR	rs16945716-C	0.04904	6E-12		0.00359	[0.0026-0.0046] unit decrease	Affymetrix [NR] (imputed)	N
951	chr16	48060567	48060567	rs201832334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q12.1		rs201832334-CT	NR	8E-9		0.0336	[0.022-0.045] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
951	chr16	48094750	48094751	rs75617718	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	16q12.1	NR	rs75617718-T	0.02224	3E-6		0.4864	[0.28-0.69] unit increase	Illumina [10677593] (imputed)	N
952	chr16	48180109	48180110	rs16945894	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	16q12.1	ABCC12	rs16945894-?		9E-6				Illumina [859311]	N
953	chr16	48245317	48245318	rs17744237	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	16q12.1	NR	rs17744237-A	0.02	4E-7	(EA)	1.7	[1.38-2.08]	Affymetrix [7469170] (imputed)	N
953	chr16	48292250	48292251	rs117450953	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	16q12.1	NR	rs117450953-T	0.01994	1E-6		0.526	[0.31-0.74] unit increase	Illumina [10677593] (imputed)	N
954	chr16	48375776	48375777	rs6500380	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive sweating	1,245 Japanese ancestry female cases, 3,293 Japanese ancestry female controls	NA	16q12.1	ABCC11	rs6500380-G	0.14	7E-10		1.61	[1.38-1.87]	Affymetrix [536506]	N
954	chr16	48398071	48398072	rs112953954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q12.1	NR	rs112953954-T	0.062478	2E-10		0.024614	[0.017-0.032] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
954	chr16	48401673	48401674	rs139724140	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	16q12.1	NR	rs139724140-T	0.02338	3E-6		0.4757	[0.28-0.67] unit increase	Illumina [10677593] (imputed)	N
954	chr16	48402580	48402581	rs75736976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q12.1	SIAH1	rs75736976-T	0.02784	4E-9		0.04257559	[0.028-0.057] unit increase	Affymetrix [93095623] (imputed)	N
954	chr16	48402580	48402581	rs75736976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16q12.1	NR	rs75736976-T	0.028225	7E-11		0.041754	[0.029-0.054] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
954	chr16	48402580	48402581	rs75736976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q12.1		rs75736976-?	NR	1E-8				NR [~ 8900000] (imputed)	N
954	chr16	48415645	48415646	rs189265215	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q12.1	SIAH1	rs189265215-A	0.9906	4E-7		0.3969	[0.24-0.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
954	chr16	48449170	48449171	rs17752448	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SIAH1	rs17752448-?	NR	4E-8	(female)	1.23141	[NR] unit increase	Affymetrix [NR] (imputed)	N
954	chr16	48463665	48463666	rs139677998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.1	SIAH1	rs139677998-A	0.0037	7E-6		0.3585	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
954	chr16	48463665	48463666	rs139677998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.1	SIAH1	rs139677998-A	0.0037	7E-6		0.3585	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
954	chr16	48475558	48475561	rs368170838	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q12.1	MIR548AE2, N4BP1	rs368170838-CTTT	0.883708	2E-14	(propyl 4-hydroxybenzoate sulfate)	0.305	[0.23-0.38] unit decrease	Illumina [13039987] (imputed)	N
955	chr16	48556956	48556957	rs59133465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q12.1		rs59133465-G	NR	1E-15		0.0154	[0.012-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
955	chr16	48568270	48568271	rs17826468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q12.1		rs17826468-?	NR	3E-8				NR [~ 8900000] (imputed)	N
955	chr16	48582769	48582770	rs752992795	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (mild)	4,748 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16q12.1	SLC5A2	rs752992795-A	0.0020	9E-12		3.65	[2.52-5.30]	Illumina [32500000] (imputed)	N
955	chr16	48582769	48582770	rs752992795	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	16q12.1	SLC5A2	rs752992795-A	0.00195	4E-13		2.948	[2.20-3.95]	Illumina [32500000] (imputed)	N
955	chr16	48591637	48591638	rs7187513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs7187513-C	0.313341	1E-26				Affymetrix, Illumina [19872809] (imputed)	N
955	chr16	48598736	48598737	rs1120275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q12.1	NR	rs1120275-G	0.3108	8E-29		0.023893	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
955	chr16	48607019	48607020	rs67326386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q12.1	RP11-44I10.3, N4BP1	rs67326386-C	0.326426	1E-29		0.027066207	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr16	48607019	48607020	rs67326386	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q12.1	RP11-44I10.3, N4BP1	rs67326386-C	0.326432	1E-24		0.024514517	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr16	48621401	48621402	rs6500395	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	16q12.1	ENSG00000102921	rs6500395-?	0.35	6E-7	(CSJC, RF+)	2.2	[NR] unit increase	Illumina [534053]	N
956	chr16	48652982	48652984	rs569868609	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16q12.1	N4BP1	rs569868609-C	0.3306	3E-10		0.02426945	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr16	48652982	48652984	rs569868609	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16q12.1	N4BP1	rs569868609-C	0.3308	5E-11		0.02517495	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr16	48656063	48656063	rs535680968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16q12.1	N4BP1, RP11-42I10.1	rs535680968-CT	0.2959	6E-11		0.0262416	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr16	48656063	48656063	rs535680968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16q12.1	N4BP1, RP11-42I10.1	rs535680968-CT	0.296	1E-12		0.02823114	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr16	48656063	48656063	rs535680968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16q12.1	N4BP1, RP11-42I10.1	rs535680968-CT	0.2959	6E-11		0.02623913	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr16	48696527	48696528	rs7498831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q12.1		rs7498831-?	NR	3E-21				NR [~ 8900000] (imputed)	N
956	chr16	48747432	48747433	rs11861256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.1	Intergenic	rs11861256-A	0.1914	8E-9	(MTAG)	0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
957	chr16	48768936	48768937	rs28612075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.1	Intergenic	rs28612075-A	0.1847	6E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
957	chr16	48791391	48791392	rs11640569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.1		rs11640569-A	0.142	3E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
957	chr16	48869007	48869008	rs117817143	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16q12.1	CBLN1	rs117817143-C	0.01	1E-7	(EA)	1.26	[0.79-1.73] unit increase	Illumina [up to 13042663] (imputed)	N
958	chr16	48972367	48972368	rs149069109	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		16q12.1	KLF8P1	rs149069109-C	0.977	5E-6		0.044	[0.024-0.064] dioptres decrease	NR [5900115] (imputed)	N
958	chr16	48995895	48995896	rs1420585	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	16q12.1	CBLN1	rs1420585-T	0.1425	9E-6				Illumina [4404269] (imputed)	N
958	chr16	48999188	48999189	rs73553365	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBLN1	5,354 Icelandic ancestry individuals	NA	16q12.1		rs73553365-T	0.1215	2E-207		0.802831	[0.75-0.85] unit decrease	Illumina [7506463] (imputed)	N
958	chr16	49000699	49000700	rs13339074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q12.1	NR	rs13339074-G	0.131	3E-211	(Cerebellin-1, CBLN1.9313.27.3)	1.09	[1.01-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr16	49001908	49001909	rs62031961	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q12.1	NR	rs62031961-T	0.015	3E-13	(Cerebellin-1, CBLN1.9313.27.3)	0.77	[0.55-0.99] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr16	49004067	49004068	rs76466694	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q12.1	NR	rs76466694-C	0.133	2E-236	(Cerebellin-1, CBLN1.9313.27.3)	1.11	[1.05-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr16	49004283	49004284	rs3944007	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	16q12.1		rs3944007-?	NR	1E-5				Affymetrix, Illumina [3311160] (imputed)	N
958	chr16	49006457	49006458	rs10852587	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q12.1	CBLN1	rs10852587-A	0.144	7E-240	(Cerebellin-1, CBLN1.9313.27.3)	1.08	[1.02-1.14] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr16	49011248	49011249	rs6500208	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.1	NR	rs6500208-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
958	chr16	49011248	49011249	rs6500208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q12.1		rs6500208-?	NR	9E-10				NR [~ 8900000] (imputed)	N
958	chr16	49011248	49011249	rs6500208	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q12.1	NA	rs6500208-A	0.2021	3E-13		0.0146	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
959	chr16	49040844	49040845	rs13335729	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16q12.1	NR	rs13335729-?	NR	9E-6	(AA)	4.43	[3.67-5.19]	Illumina [905956]	N
959	chr16	49057187	49057188	rs2908889	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16q12.1	NA	rs2908889-A	0.3885	7E-12		0.0121	[0.0086-0.0156] unit increase	NR [~ 27400000] (imputed)	N
959	chr16	49062589	49062590	rs2080454	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q12.1	NR	rs2080454-C	NR	8E-9		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
959	chr16	49062589	49062590	rs2080454	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q12.1	MIR5095, CBLN1	rs2080454-A	0.61	8E-11		0.015	[0.011-0.019] unit decrease	Illumina [6108953] (imputed)	N
959	chr16	49062589	49062590	rs2080454	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16q12.1	NR	rs2080454-A	0.595292377611283	3E-12		0.01925606	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
959	chr16	49062589	49062590	rs2080454	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.1	CBLN1	rs2080454-C	0.413	9E-9		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
959	chr16	49062589	49062590	rs2080454	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.1	CBLN1	rs2080454-C	0.405	7E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
959	chr16	49064423	49064424	rs8045063	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q12.1	CBLN1	rs8045063-G	0.810292	1E-8		0.00997947	[0.0065-0.0134] unit decrease	Affymetrix [12370749]	N
959	chr16	49065629	49065630	rs62032001	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q12.1	CBLN1	rs62032001-A	0.802785	4E-9		0.0103954	[0.0069-0.0139] unit decrease	Affymetrix [12370749]	N
959	chr16	49080251	49080252	rs79762284	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q12.1	MTND4LP25	rs79762284-C	0.0658	6E-6		0.0617	[0.035-0.088] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
959	chr16	49085648	49085649	rs1420601	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Isoleucine)	16,596 European ancestry individuals	NA	16q12.1	CBLN1	rs1420601-C	0.4	4E-8		0.07	[0.045-0.095] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
959	chr16	49142505	49142506	rs16946931	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	16q12.1	N4BP1, CBLN1	rs16946931-C		2E-6		1.681	[1-2.37] unit increase	Illumina [2462046] (imputed)	N
959	chr16	49149190	49149191	rs1420607	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	16q12.1	NR	rs1420607-A	0.2713	2E-11		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
960	chr16	49237037	49237038	rs12920150	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	16q12.1	CBLN1	rs12920150-T	0.7609	4E-9		1.0813149	[1.05-1.11]	Affymetrix [15688218] (imputed)	N
960	chr16	49279001	49279002	rs41190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	16q12.1		rs41190-?	NR	3E-11				NR [~ 8900000] (imputed)	N
961	chr16	49324738	49324739	rs41214	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q12.1	CBLN1	rs41214-G	0.71953125	4E-8	(CBLN1, 9313_27_3)	0.14769806	[0.095-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
961	chr16	49334919	49334920	rs528691370	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	16q12.1	RP11-491F9.2	rs528691370-T	0.0013	3E-7		1.3581	[0.84-1.88] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
962	chr16	49444458	49444459	rs1559367	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	16q12.1	C16orf78	rs1559367-?	NR	5E-6				Illumina [2668805]	N
962	chr16	49446372	49446373	rs190668351	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	16q12.1	C16orf78	rs190668351-?	NR	7E-6		22.3	[5.27-94.1]	Illumina [654642] (imputed)	N
962	chr16	49467233	49467234	rs4785296	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.1	C16orf78, ZNF423	rs4785296-C	0.231	1E-9		1.0267515		Affymetrix [11880941] (imputed)	N
962	chr16	49477271	49477272	rs35888008	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.1	C16orf78, ZNF423	rs35888008-A	0.7694	1E-9		0.0121717	[0.0082-0.0161] unit decrease	Affymetrix [11880941] (imputed)	N
962	chr16	49477271	49477272	rs35888008	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	16q12.1	intergenic	rs35888008-A	NR	6E-6	(females)	0.12	[0.061-0.179] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
962	chr16	49477271	49477272	rs35888008	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	16q12.1	intergenic	rs35888008-A	NR	4E-6		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
962	chr16	49522433	49522434	rs9921634	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.1	NR	rs9921634-?	NR	7E-10				Affymetrix [NR]	N
962	chr16	49534971	49534972	rs118179271	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	16q12.1		rs118179271-?	NR	7E-6		0.8123349	[0.46-1.16] unit increase	Illumina [9842460] (imputed)	N
963	chr16	49567020	49567021	rs76796131	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q12.1	NR	rs76796131-T	0.0403	2E-11		0.0186652	[0.013-0.024] unit increase	NR [9732723] (imputed)	N
963	chr16	49590971	49590972	rs72793523	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16q12.1	ZNF423	rs72793523-G	NR	6E-6		0.0324662	[0.018-0.046] unit increase	Illumina [13520550] (imputed)	N
963	chr16	49622283	49622284	rs12448731	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16q12.1	ZNF423	rs12448731-C	0.858022	2E-9		0.0179417	[0.012-0.024] unit increase	NR [16516521] (imputed)	N
963	chr16	49626771	49626772	rs55942317	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q12.1		rs55942317-G	0.911	5E-14		0.016	[0.012-0.02] unit decrease	NR [NR] (imputed)	N
963	chr16	49626771	49626772	rs55942317	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q12.1	ZNF423	rs55942317-A	0.09	5E-8		0.024579043	[0.016-0.033] unit increase	Affymetrix [~ 11515000] (imputed)	N
963	chr16	49626771	49626772	rs55942317	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16q12.1	ZNF423	rs55942317-A	0.0903	2E-12		0.029158004	[0.021-0.037] unit increase	Affymetrix [11515109] (imputed)	N
963	chr16	49629700	49629701	rs59642940	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.1	NR	rs59642940-A	0.04007	1E-9	(ADH7)	0.165	NR unit increase	Illumina [1671387] (imputed)	N
963	chr16	49638615	49638616	rs9922046	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q12.1	NR	rs9922046-G	0.1745	2E-12				NR [9056863] (imputed)	N
963	chr16	49643565	49643566	rs2080501	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q12.1		rs2080501-A	0.45	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
963	chr16	49643565	49643566	rs2080501	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q12.1	NR	rs2080501-G	0.532905723186471	5E-6	(IGP76)	0.141	[0.081-0.201] unit decrease	Illumina [~ 2500000] (imputed)	N
963	chr16	49643565	49643566	rs2080501	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q12.1	NR	rs2080501-G	0.532295847079804	4E-6	(IGP75)	0.1421	[0.082-0.203] unit increase	Illumina [~ 2500000] (imputed)	N
963	chr16	49644297	49644298	rs7203818	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q12.1		rs7203818-A	0.16	6E-13		7.2	z score increase	Affymetrix [9061022] (imputed)	N
963	chr16	49644297	49644298	rs7203818	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q12.1	NR	rs7203818-A	0.1738	1E-14				NR [9056863] (imputed)	N
963	chr16	49652778	49652779	rs16944158	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q12.1	NR	rs16944158-G	0.271065156389634	4E-6	(IGP74)	0.162	[0.093-0.231] unit decrease	Illumina [~ 2500000] (imputed)	N
963	chr16	49655193	49655194	rs9927556	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q12.1		rs9927556-T	0.16	6E-11		6.56	z score increase	Affymetrix [9061022] (imputed)	N
963	chr16	49671176	49671177	rs34214571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs34214571-?	NR	2E-8				NR [~ 8900000] (imputed)	N
964	chr16	49731985	49731986	rs56295507	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	16q12.1	ZNF423	rs56295507-G	0.788221429	7E-6		0.148834	[0.084-0.214] unit increase	Illumina [6969139] (imputed)	N
964	chr16	49750789	49750790	rs17281813	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	16q12.1	ZNF423	rs17281813-?	NR	3E-6	(binary)			Perlegen [429981]	N
964	chr16	49762511	49762512	rs8045324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q12.1		rs8045324-A	NR	2E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
964	chr16	49766771	49766772	rs4785187	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q12.1		rs4785187-G	0.778	1E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
964	chr16	49766771	49766772	rs4785187	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q12.1	NR	rs4785187-A	0.223	7E-11		0.01997724	[0.014-0.026] unit increase	NR [~ 10000000] (imputed)	N
964	chr16	49766771	49766772	rs4785187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.1		rs4785187-A	0.2253	3E-9		0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
964	chr16	49766771	49766772	rs4785187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.1	Intergenic	rs4785187-A	0.2253	4E-10	(MTAG)	0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
964	chr16	49767566	49767567	rs7404616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q12.1		rs7404616-A	NR	3E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
964	chr16	49767920	49767921	rs7404754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs7404754-?	NR	1E-9				NR [~ 8900000] (imputed)	N
964	chr16	49768045	49768046	rs10468291	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	16q12.1	ZNF423	rs10468291-C	0.43100000000000005	4E-11		0.1166	[0.082-0.151] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
964	chr16	49769635	49769636	rs752894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q12.1		rs752894-?	NR	2E-8				NR [~ 8900000] (imputed)	N
964	chr16	49786257	49786258	rs141854787	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	16q12.1	NR	rs141854787-T		6E-6		0.35	[0.21-0.49] unit increase	NR [5896100] (imputed)	N
964	chr16	49789336	49789337	rs7197830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q12.1	Intergenic	rs7197830-A	0.3546	2E-9	(MTAG)	0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
964	chr16	49789336	49789337	rs7197830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q12.1	Intergenic	rs7197830-A	0.3546	7E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
964	chr16	49790776	49790777	rs4785340	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16q12.1		rs4785340-T	0.4374	2E-9		0.14649206	[0.099-0.194] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
964	chr16	49790776	49790777	rs4785340	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	16q12.1		rs4785340-T	0.4362	2E-8		5.57933	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
964	chr16	49799455	49799455	rs59923016	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	16q12.1		rs59923016-?	NR	1E-6	(overall)	1.21		Illumina [11595112] (imputed)	N
965	chr16	49809562	49809563	rs7403957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.1	Intergenic	rs7403957-A	0.3625	9E-11	(MTAG)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
965	chr16	49824896	49824897	rs6500257	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q12.1	NR	rs6500257-A	0.435	8E-15		0.00845886	[0.0063-0.0106] unit increase	NR [9732723] (imputed)	N
965	chr16	49824896	49824897	rs6500257	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16q12.1	NR	rs6500257-A	0.437	7E-11		0.00959681	[0.0067-0.0125] unit decrease	NR [9732723] (imputed)	N
965	chr16	49830203	49830204	rs8060157	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q12.1	NR	rs8060157-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
965	chr16	49830203	49830204	rs8060157	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q12.1	NR	rs8060157-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
965	chr16	49847601	49847602	rs73577318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16q12.1	ZNF423	rs73577318-C	NR	3E-9		0.0305467	[0.02-0.041] unit decrease	Affymetrix [323858] (imputed)	N
965	chr16	49847601	49847602	rs73577318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16q12.1	ZNF423	rs73577318-C	NR	8E-9		0.0298188	[0.02-0.04] unit decrease	Affymetrix [127266] (imputed)	N
965	chr16	49847601	49847602	rs73577318	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q12.1	NR	rs73577318-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
965	chr16	49856084	49856085	rs374393673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q12.1	ZNF423	rs374393673-A	0.533175	7E-10		0.014101093	[0.0096-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
965	chr16	49864790	49864791	rs2047937	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	16q12.1	NR	rs2047937-C	0.48	5E-19		0.016	[0.013-0.019] unit increase	Affymetrix [2446094] (imputed)	N
965	chr16	49864790	49864791	rs2047937	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	16q12.1	NR	rs2047937-C	0.48	5E-8				Affymetrix [2446094] (imputed)	N
965	chr16	49864790	49864791	rs2047937	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q12.1	NA	rs2047937-T	0.517	5E-10		0.0106	[0.0073-0.0139] unit decrease	NR [~ 27400000] (imputed)	N
965	chr16	49864790	49864791	rs2047937	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q12.1	ZNF423	rs2047937-T	0.5057	5E-7		0.0192	[0.012-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
965	chr16	49864790	49864791	rs2047937	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.1	ZNF423	rs2047937-T	0.5057	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
965	chr16	49864790	49864791	rs2047937	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.1	ZNF423	rs2047937-T	0.5057	4E-7		0.0176	[0.011-0.024] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
965	chr16	49864790	49864791	rs2047937	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.1	ZNF423	rs2047937-C	0.4983	6E-6		0.015	[0.0085-0.0215] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
965	chr16	49864790	49864791	rs2047937	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.1	ZNF423	rs2047937-C	0.4976	4E-6	(EA)	0.0159	[0.0092-0.0226] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
965	chr16	49864790	49864791	rs2047937	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.1	ZNF423	rs2047937-T	0.5025	5E-8	(EA)	0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
965	chr16	49864790	49864791	rs2047937	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.1	ZNF423	rs2047937-T	0.5025	5E-7	(EA,women)	0.0218	[0.013-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
965	chr16	49865557	49865558	rs1468869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q12.1		rs1468869-?	NR	7E-9				NR [~ 8900000] (imputed)	N
965	chr16	49868512	49868513	rs34050011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	16q12.1	ZNF423	rs34050011-A	NR	7E-11		0.0206482	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
965	chr16	49868512	49868513	rs34050011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16q12.1	ZNF423	rs34050011-A	NR	6E-11		0.0207682	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
965	chr16	49868512	49868513	rs34050011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q12.1	ZNF423	rs34050011-A	0.424198	3E-11		0.015014163	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
965	chr16	49868512	49868513	rs34050011	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q12.1	NR	rs34050011-A	0.424289	1E-9		0.00552096	[0.0039-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
965	chr16	49868512	49868513	rs34050011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q12.1	NR	rs34050011-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
965	chr16	49868512	49868513	rs34050011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q12.1		rs34050011-?	NR	7E-20				NR [~ 8900000] (imputed)	N
965	chr16	49868512	49868513	rs34050011	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	16q12.1	NR	rs34050011-A	0.4224	1E-16		0.0166	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
965	chr16	49869217	49869218	rs73569791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q12.1		rs73569791-T	NR	1E-8		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
965	chr16	49874675	49874676	rs933561	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	ZNF423	rs933561-A	0.655592	4E-13		0.0141303	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
965	chr16	49874675	49874676	rs933561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs933561-?	NR	1E-18				NR [~ 8900000] (imputed)	N
965	chr16	49874675	49874676	rs933561	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs933561-?	NR	2E-14		0.0163967	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
965	chr16	49877938	49877939	rs1876001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q12.1	ZNF423	rs1876001-G	NR	3E-10		0.018045	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
965	chr16	49877938	49877939	rs1876001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q12.1	ZNF423	rs1876001-G	NR	7E-9		0.0179039	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
965	chr16	49877938	49877939	rs1876001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q12.1	ZNF423	rs1876001-G	NR	2E-9		0.0170763	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
965	chr16	49877938	49877939	rs1876001	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q12.1	NR	rs1876001-?	NR	9E-17				Affymetrix [~ 8270000] (imputed)	N
965	chr16	49877938	49877939	rs1876001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs1876001-?	NR	4E-12				NR [~ 8900000] (imputed)	N
965	chr16	49883926	49883927	rs34294937	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q12.1	TMEM188	rs34294937-A	0.2063	5E-10		0.2079	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
965	chr16	49883926	49883927	rs34294937	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q12.1	NR	rs34294937-A	0.220833	2E-9		0.0225411	[0.015-0.03] unit decrease	NR [19129689] (imputed)	N
965	chr16	49884529	49884530	rs28633718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q12.1		rs28633718-G	NR	2E-9		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
965	chr16	49884529	49884530	rs28633718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q12.1		rs28633718-?	NR	4E-8				NR [~ 8900000] (imputed)	N
965	chr16	49884568	49884569	rs12923943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q12.1	NR	rs12923943-C	0.208886	2E-11		0.015189	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
965	chr16	49885736	49885737	rs1362622	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs1362622-A	0.197679	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
965	chr16	49885784	49885785	rs1362623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q12.1	ZNF423	rs1362623-T	0.210189	4E-10		0.017011993	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
965	chr16	49885784	49885785	rs1362623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q12.1	ZNF423	rs1362623-T	0.210188	2E-12		0.019095698	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
965	chr16	49885784	49885785	rs1362623	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q12.1	NR	rs1362623-T	0.207792	1E-14		0.018278	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
965	chr16	49888930	49888931	rs9745989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q12.1		rs9745989-C	NR	7E-14		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
965	chr16	49890338	49890339	rs550708499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q12.1		rs550708499-G	NR	5E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
965	chr16	49891963	49891964	rs8050598	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q12.1	NR	rs8050598-T	0.254117	2E-10	(Conditioned on chr16:49766772)	0.018669754	[0.013-0.024] unit increase	NR [~ 10000000] (imputed)	N
965	chr16	49898084	49898085	rs12444040	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q12.1	NR	rs12444040-?	NR	3E-8				Illumina [7760689] (imputed)	N
966	chr16	49946669	49946670	rs6500265	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	16q12.1		rs6500265-T	0.2782	6E-9		2.654		Illumina [7608150]	N
966	chr16	49946669	49946670	rs6500265	28100913	Ueta M	2017-01-19	J Hum Genet	Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	117 Japanese ancestry cases, 688 Japanese ancestry controls	52 East Asian ancestry cases, 302 East Asian ancestry controls	16q12.1	ZNF423, CNEP1R1	rs6500265-T	0.14	1E-7		2.07	1.58-2.71	Affymetrix [6714496] (imputed)	N
966	chr16	49950640	49950641	rs9888871	28100913	Ueta M	2017-01-19	J Hum Genet	Genome-wide association study using the ethnicity-specific Japonica array: identification of new susceptibility loci for cold medicine-related Stevens-Johnson syndrome with severe ocular complications.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	117 Japanese ancestry cases, 688 Japanese ancestry controls	52 East Asian ancestry cases, 302 East Asian ancestry controls	16q12.1	ZNF423, CNEP1R1	rs9888871-C	0.092	2E-7		2.24	1.66-3.02	Affymetrix [6714496] (imputed)	N
966	chr16	49961514	49961515	rs147035085	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	16q12.1	NR	rs147035085-?	NR	9E-6		0.2165	[0.12-0.31] unit increase	Illumina [at least 560000] (imputed)	N
966	chr16	49968854	49968855	rs60458630	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Borreliales abundance in stool	5,959 Finnish ancestry individuals	NA	16q12.1		rs60458630-A	0.012576	5E-8		0.120568	[0.077-0.164] unit increase	Illumina [7980478] (imputed)	N
966	chr16	49968854	49968855	rs60458630	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Borreliaceae abundance in stool	5,959 Finnish ancestry individuals	NA	16q12.1		rs60458630-A	0.012576	3E-8		0.128903	[0.083-0.175] unit increase	Illumina [7980478] (imputed)	N
966	chr16	49982756	49982757	rs77414823	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q12.1	Intergenic	rs77414823-T	NR	2E-7	(between families)	5.24	unit decrease	Affymetrix [up to 15107142] (imputed)	N
966	chr16	50013966	50013967	rs12597023	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	16q12.1	intergenic	rs12597023-?	NR	6E-6	(Alpha peak frequency, occipital	0.089	[0.05-0.128] unit increase	Illumina [527829]	N
966	chr16	50019981	50019981	rs57163768	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q12.1	NR	rs57163768-AT	0.208451	4E-12		0.0565989	[0.04-0.073] unit decrease	Affymetrix [17914406] (imputed)	N
966	chr16	50027129	50027130	rs9921295	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	16q12.1	ZNF423, CNEP1R1	rs9921295-G	0.33	4E-12		0.031	NR unit increase	Illumina [9591901] (imputed)	N
966	chr16	50027129	50027130	rs9921295	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	16q12.1	ZNF423, CNEP1R1	rs9921295-T	0.92	8E-7		0.01	unit increase	NR [NR]	N
966	chr16	50044968	50044969	rs75667161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q12.1		rs75667161-A	0.217924	1E-12		0.019699449	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
966	chr16	50044968	50044969	rs75667161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q12.1		rs75667161-A	0.217776	3E-19		0.024105	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
966	chr16	50044968	50044969	rs75667161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q12.1		rs75667161-A	0.217797	3E-19		0.024344811	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
966	chr16	50045838	50045839	rs4638568	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Epilepsy	14,534 European ancestry cases, 531 Han Chinese ancestry cases, 147 African American cases, 24,218 European ancestry controls, 2,875 Han Chinese ancestry controls, 2,584 African American controls	NA	16q12.1	HEATR3, BRD7	rs4638568-A	0.06	4E-8		5.49	unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
966	chr16	50047798	50047799	rs117401978	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	16q12.1		rs117401978-A	0.010953	9E-7		2.3992324	NR	Affymetrix [7846216] (imputed)	N
967	chr16	50075547	50075548	rs4619403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q12.1		rs4619403-A	NR	2E-18		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
967	chr16	50079389	50079390	rs12922541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs12922541-C	0.680733	5E-12				Affymetrix, Illumina [24649327] (imputed)	N
967	chr16	50088999	50089001	rs67773324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q12.1	RP11-429P3.3	rs67773324-G	0.740092	3E-25		0.02725169	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
967	chr16	50089207	50089208	rs11288784	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q12.1	HEATR3	rs11288784-G	0.365	2E-10		0.902	[0.87-0.93]	Illumina [11270530] (imputed)	N
967	chr16	50093237	50093238	rs12599260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q12.1		rs12599260-?	NR	7E-23				NR [~ 8900000] (imputed)	N
967	chr16	50098886	50098887	rs8046856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16q12.1	NR	rs8046856-A	0.290194	3E-30		0.023708	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
967	chr16	50102219	50102220	rs1008815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs1008815-G	0.765217	1E-23				Affymetrix, Illumina [20825802] (imputed)	N
967	chr16	50103733	50103734	rs4785204	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	16q12.1	HEATR3	rs4785204-T	0.26	2E-20		1.24	[1.18-1.29]	NR [NR]	N
967	chr16	50106593	50106594	rs2287197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q12.1		rs2287197-?	NR	2E-30				NR [~ 8900000] (imputed)	N
967	chr16	50107272	50107273	rs62033029	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q12.1	HEATR3	rs62033029-A	0.2064	2E-9		0.0141	[0.0096-0.0186] unit decrease	Affymetrix [18391927] (imputed)	N
967	chr16	50108892	50108892	rs71138029	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16q12.1	HEATR3	rs71138029-CA	NR	7E-13		0.0313909	[0.023-0.04] unit increase	Affymetrix [16832071] (imputed)	N
967	chr16	50109477	50109478	rs12931497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs12931497-G	0.292313	3E-27				Affymetrix, Illumina [22063850] (imputed)	N
967	chr16	50109477	50109478	rs12931497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs12931497-A	0.69051	3E-22				Affymetrix, Illumina [24246363] (imputed)	N
967	chr16	50110650	50110651	rs56189455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q12.1		rs56189455-A	NR	1E-20		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
967	chr16	50110650	50110651	rs56189455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q12.1	HEATR3	rs56189455-A	0.712297	1E-17		0.021338757	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr16	50123006	50123007	rs182721904	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	16q12.1		rs182721904-G	0.0219529	4E-8		0.0858985	[0.055-0.117] unit increase	Illumina [7980478] (imputed)	N
967	chr16	50123310	50123310	rs201019882	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q12.1	NR	rs201019882-T	0.712065	1E-8		0.0419248	[0.027-0.057] unit increase	Affymetrix [17914406] (imputed)	N
967	chr16	50128871	50128872	rs10852606	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	16q12.1	HEATR3	rs10852606-C	0.713	4E-11		1.14	1.10-1.19	Illumina [at least 6887412] (imputed)	N
967	chr16	50128871	50128872	rs10852606	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	16q12.1	HEATR3	rs10852606-C	0.713	1E-11		1.18	1.13-1.24	Illumina [at least 6790270] (imputed)	N
967	chr16	50129264	50129265	rs8047421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16q12.1	NR	rs8047421-G	0.193781	2E-22		0.022414	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
967	chr16	50138099	50138100	rs6500282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	16q12.1		rs6500282-C	NR	2E-12		0.0655	[0.047-0.084] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
967	chr16	50142943	50142944	rs8046148	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	16q12.1	HEATR3, AF086132	rs8046148-G	0.81	3E-9		1.24	1.15-1.33	Illumina [9210350] (imputed)	N
967	chr16	50142943	50142944	rs8046148	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	16q12.1	HEATR3, AF086132	rs8046148-A	0.79	5E-7		1.16	[1.10-1.21]	Illumina [at least 371504] (imputed)	N
967	chr16	50142943	50142944	rs8046148	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	16q12.1	HEATR3	rs8046148-G	0.79	4E-9		1.32	[1.17-1.48]	Illumina [307291]	N
967	chr16	50142943	50142944	rs8046148	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	16q12.1	HEATR3	rs8046148-?	NR	3E-6		1.2	[1.11-1.30]	Illumina [NR]	N
967	chr16	50143203	50143204	rs9933767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs9933767-G	0.756268	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
967	chr16	50147992	50147993	rs4785384	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	16q12.1	HEATR3	rs4785384-T	0.73	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
967	chr16	50148773	50148774	rs1362634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q12.1		rs1362634-T	NR	5E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
967	chr16	50154359	50154360	rs79773228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q12.1		rs79773228-C	NR	3E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
967	chr16	50154679	50154680	rs79272715	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q12.1	NR	rs79272715-?	NR	2E-6		4.196	NR unit increase	Affymetrix [at least 600000] (imputed)	N
967	chr16	50155003	50155004	rs552214848	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q12.1	NR	rs552214848-?	NR	5E-6		5.77	NR unit increase	Affymetrix [at least 600000] (imputed)	N
967	chr16	50160736	50160737	rs75859969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q12.1		rs75859969-?	NR	8E-11				NR [~ 8900000] (imputed)	N
967	chr16	50166650	50166651	rs11076515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q12.1		rs11076515-A	0.754188	6E-12		0.018012341	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
967	chr16	50168292	50168293	rs12923319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q12.1	NR	rs12923319-A	0.753259	3E-12		0.015001	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
967	chr16	50188928	50188929	rs76219171	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q12.1	PAPD5	rs76219171-A	0.0601	2E-12		0.0351	[0.025-0.045] unit decrease	Affymetrix [19819130] (imputed)	N
967	chr16	50188928	50188929	rs76219171	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16q12.1	PAPD5	rs76219171-A	0.0601	1E-8		0.0283	[0.019-0.038] unit decrease	Affymetrix [19819130] (imputed)	N
967	chr16	50188928	50188929	rs76219171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q12.1		rs76219171-?	NR	8E-12				NR [~ 8900000] (imputed)	N
968	chr16	50212588	50212589	rs74250734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16q12.1	PAPD5	rs74250734-G	0.0949489999999999	5E-9		0.022319645	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
968	chr16	50249079	50249080	rs3814284	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.1	NR	rs3814284-?	NR	2E-10				Affymetrix [NR]	N
968	chr16	50271805	50271806	rs7205514	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q12.1	PAPD5	rs7205514-T	0.241543	1E-8		0.017655	[0.012-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
968	chr16	50277213	50277214	rs11864208	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	16q12.1	PAPD5	rs11864208-C	NR	4E-6		1.27	[NR]	Illumina [up to 9792010] (imputed)	N
968	chr16	50304248	50304249	rs77150043	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	16q12.1		rs77150043-?	NR	5E-6		0.028	NR unit increase	NR [6490614] (imputed)	N
968	chr16	50304248	50304249	rs77150043	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	16q12.1	ADCY7	rs77150043-T	0.23	6E-9				Illumina [7347414] (imputed)	N
969	chr16	50335073	50335074	rs78534766	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	16q12.1		rs78534766-A	0.005866	5E-10		0.45	[0.31-0.59] unit increase	NR [11842647] (imputed)	N
969	chr16	50335073	50335074	rs78534766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16q12.1		rs78534766-A	NR	1E-9		0.3754	[0.26-0.5] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
969	chr16	50335073	50335074	rs78534766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q12.1	ADCY7	rs78534766-A	0.00595699999999999	9E-17		0.119596206	[0.091-0.148] unit increase	Affymetrix [93095623] (imputed)	N
969	chr16	50335073	50335074	rs78534766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q12.1	ADCY7	rs78534766-A	0.00595500000000004	1E-11		0.09732644	[0.069-0.125] unit increase	Affymetrix [93095623] (imputed)	N
969	chr16	50335073	50335074	rs78534766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs78534766-A	0.00574465	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
969	chr16	50335073	50335074	rs78534766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q12.1	NR	rs78534766-A	0.005892	4E-14		0.098103	[0.073-0.124] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
969	chr16	50335073	50335074	rs78534766	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	16q12.1	ADCY7	rs78534766-A	0.006	1E-14		1.46	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
969	chr16	50335073	50335074	rs78534766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	16q12.1		rs78534766-?	NR	1E-16				NR [~ 8900000] (imputed)	N
969	chr16	50335073	50335074	rs78534766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	16q12.1		rs78534766-?	NR	5E-13				NR [~ 8900000] (imputed)	N
969	chr16	50335073	50335074	rs78534766	28067910	Luo Y	2017-01-09	Nat Genet	Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7.	Ulcerative colitis	7,760 European ancestry cases, 16,065 European ancestry controls	5,054 European ancestry cases, 450 cases, 162,024 European ancestry controls, 3,905 controls	16q12.1	ADCY7	rs78534766-?	NR	1E-14		2.16	[1.77-2.62]	Affymetrix, Illumina [~ 12000000] (imputed)	N
969	chr16	50335073	50335074	rs78534766	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16q12.1	ADCY7	rs78534766-?		3E-13				Illumina [9578670] (imputed)	N
969	chr16	50335073	50335074	rs78534766	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16q12.1	ADCY7	rs78534766-?		2E-12				Illumina [9725440] (imputed)	N
969	chr16	50338340	50338341	rs61731915	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q12.1		rs61731915-?	NR	2E-10		0.0874012	[0.061-0.114] unit increase	NR [9800000] (imputed)	N
969	chr16	50350209	50350210	rs1872691	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	16q12.1	BRD7	rs1872691-A	0.181059	5E-10		0.07366563	[0.05-0.097] unit decrease	Affymetrix [7288503] (imputed)	N
969	chr16	50353528	50353529	rs7195228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	16q12.1		rs7195228-G	NR	3E-9		0.0696	[0.047-0.093] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
969	chr16	50437527	50437528	rs9941219	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	16q12.1	BRD7	rs9941219-A	0.024	4E-6		0.154	[0.089-0.219] unit increase	Illumina [747076]	N
970	chr16	50507985	50507986	rs72790317	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	16q12.1	BRD7	rs72790317-G	0.05	4E-7		1.33	[1.19-1.48]	Affymetrix, Illumina [16531985] (imputed)	N
970	chr16	50533600	50533601	rs140035696	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.1	NR	rs140035696-G	0.0165	5E-6	(EA)	0.1271	[0.072-0.182] unit increase	Illumina [~ 11800000] (imputed)	N
970	chr16	50550136	50550137	rs34941092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs34941092-?	NR	3E-9				NR [~ 8900000] (imputed)	N
970	chr16	50550136	50550137	rs34941092	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	16q12.1	NKD1	rs34941092-G	0.8502000000000001	3E-14		0.3225	[0.24-0.41] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
971	chr16	50649450	50649451	rs186626582	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	16q12.1	NR	rs186626582-?	NR	7E-6		0.6175	[0.35-0.88] unit decrease	Illumina [at least 560000] (imputed)	N
971	chr16	50663476	50663477	rs138425259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q12.1		rs138425259-?	NR	7E-9				NR [~ 8900000] (imputed)	N
971	chr16	50668076	50668077	rs117372389	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	16q12.1	NOD2	rs117372389-T	0.02	8E-11				Illumina [7347414] (imputed)	N
971	chr16	50694010	50694011	rs2357623	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16q12.1	RP11-401P9.5	rs2357623-?	NR	4E-48	(subset analysis)			Illumina [130052]	N
971	chr16	50705253	50705254	rs59302410	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs59302410-?	NR	2E-19		0.0906632	[0.071-0.11] unit decrease	Affymetrix [20259828] (imputed)	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	5E-13	(Adult)	1.9665943	[1.64-2.36]	Illumina [2612357]	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	4E-22	(Children)	2.2327087	[1.89-2.63]	Illumina [2612357]	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	3E-24		2.1309102	[1.83-2.48]	Illumina [2612357]	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	8E-45	(Children)	3.735511	[3.10-4.49]	Illumina [2612357]	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	6E-26	(Adults)	3.2372465	[2.61-4.01]	Illumina [2612357]	N
971	chr16	50709722	50709723	rs6596	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	SNX20	rs6596-?	NR	2E-54		3.5578997	[3.02-4.20]	Illumina [2612357]	N
971	chr16	50714334	50714335	rs2270368	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	16q12.1	NOD2	rs2270368-G	0.304	1E-67		1.5	[NR]	Illumina [4577171] (imputed)	N
971	chr16	50719102	50719103	rs9302752	20018961	Zhang FR	2009-12-16	N Engl J Med	Genomewide association study of leprosy.	Leprosy	706 Han Chinese ancestry cases, 1,225 Han Chinese ancestry controls	3,254 Chinese ancestry cases, 5,955 Chinese ancestry controls	16q12.1	NOD2	rs9302752-G	0.29	4E-40		1.59	[1.49-1.71]	Illumina [491883]	N
972	chr16	50725192	50725193	rs7194886	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q12.1	SLIC1	rs7194886-?	NR	1E-6	(PC 40:6)	0.19081311	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
972	chr16	50729819	50729820	rs142997491	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	16q12.1	NOD2	rs142997491-G	0.0119418	2E-8		0.23676796	[0.15-0.32] unit increase	Affymetrix [7288503] (imputed)	N
972	chr16	50736655	50736656	rs6500328	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16q12.1	NOD2	rs6500328-A	0.5985	2E-9		0.0586	[0.04-0.078] unit increase	NR [7784415] (imputed)	N
972	chr16	50739581	50739582	rs17221417	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	16q12.1	NOD2	rs17221417-G	0.29	4E-11		1.29	[1.13-1.46]	Affymetrix [469557]	N
972	chr16	50745925	50745926	rs2066844	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	16q12.1	novelD2	rs2066844-T	0.04	8E-9				NR [> 9500000] (imputed)	N
972	chr16	50745925	50745926	rs2066844	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	16q12.1	NOD2	rs2066844-T	0.044763	3E-9		1.0895472	1.05905155654981-1.12092082938419]	NR [9572556] (imputed)	N
972	chr16	50745925	50745926	rs2066844	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16q12.1	NR	rs2066844-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
972	chr16	50745925	50745926	rs2066844	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	16q12.1	NOD2, SNX20, CYLD	rs2066844-T	0.048	4E-8		1.194	[1.121-1.272]	Affymetrix [10894596] (imputed)	N
972	chr16	50745925	50745926	rs2066844	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	16q12.1	NOD2	rs2066844-?	NR	1E-10		1.119	[1.09-1.15]	Affymetrix [9000000] (imputed)	N
972	chr16	50745925	50745926	rs2066844	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	16q12.1	NOD2	rs2066844-T	NR	6E-9		1.098	[1.07-1.13]	Affymetrix [9000000] (imputed)	N
972	chr16	50745925	50745926	rs2066844	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q12.1		rs2066844-T	0.946518	3E-40		1.1451237	[1.12-1.17]	Affymetrix, Illumina [9851866] (imputed)	N
972	chr16	50745925	50745926	rs2066844	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	16q12.1	Intergenic	rs2066844-?		8E-6		2.345	[NR]	Affymetrix [492217] (imputed)	N
972	chr16	50745925	50745926	rs2066844	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16q12.1	SNX20, NOD2, CYLD, NKD1	rs2066844-?		1E-38				Illumina [9725440] (imputed)	N
972	chr16	50745925	50745926	rs2066844	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	16q12.1	SNX20, NOD2, CYLD, NKD1	rs2066844-?		6E-99				Illumina [9560910] (imputed)	N
972	chr16	50756539	50756540	rs2066845	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16q12.1	NOD2	rs2066845-?	NR	6E-94	(subset analysis)			Illumina [130052]	N
972	chr16	50756773	50756774	rs5743289	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	16q12.1	NOD2	rs5743289-T	0.17	4E-10		1.46	[1.29-1.64]	Illumina [NR]	N
972	chr16	50756773	50756774	rs5743289	17804789	Raelson JV	2007-09-05	Proc Natl Acad Sci U S A	Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci.	Crohn's disease	382 French Canadian founder trios	750 European ancestry cases, 828 European ancestry controls, 521 European ancestry trios	16q12.1	NOD2	rs5743289-?	NR	6E-17				Perlegen [164279]	N
972	chr16	50756773	50756774	rs5743289	17447842	Libioulle C	2007-03-05	PLoS Genet	Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.	Crohn's disease	547 European ancestry cases, 928 European ancestry controls	1,266 European ancestry cases, 559 European ancestry controls, Up to 428 European ancestry trios	16q12.1	CARD15	rs5743289-?	NR	1E-6				Illumina [302451]	N
972	chr16	50756880	50756881	rs2076756	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	16q12.1		rs2076756-?	NR	5E-29		0.068	NR unit increase	NR [6490614] (imputed)	N
972	chr16	50756880	50756881	rs2076756	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	16q12.1		rs2076756-?	NR	5E-13		0.06	NR unit decrease	NR [5890016] (imputed)	N
972	chr16	50756880	50756881	rs2076756	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	16q12.1	NOD2	rs2076756-G	NR	3E-10		1.46	[NR]	Illumina [508934]	N
972	chr16	50756880	50756881	rs2076756	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	16q12.1	NOD2, SNX20, NKD1, CYLD	rs2076756-G	0.246	1E-37		1.66	[1.48-1.88]	Affymetrix, Illumina [1060934] (imputed)	N
972	chr16	50756880	50756881	rs2076756	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	16q12.1	NOD2	rs2076756-G	0.26	4E-69		1.53	[1.46-1.60]	Affymetrix, Illumina [953241] (imputed)	N
972	chr16	50756880	50756881	rs2076756	17684544	Franke A	2007-08-08	PLoS One	Systematic association mapping identifies NELL1 as a novel IBD disease gene.	Crohn's disease	393 European ancestry cases, 399 European ancestry controls	375 European ancestry trios, 1,395 European ancestry cases, 1,603 European ancestry controls, 454 French Canadian founder trios, 466 French Canadian founder cases, 358 French Canadian founder controls	16q12.1	CARD15	rs2076756-?	0.27	1E-21		1.71	[1.42-2.05]	Affymetrix [92387]	N
972	chr16	50756880	50756881	rs2076756	17435756	Rioux JD	2007-04-15	Nat Genet	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 cases, 977 controls	530 trios, 353 cases, 207 controls	16q12.1	CARD15	rs2076756-?	0.24	7E-14				Illumina [304413]	N
972	chr16	50756880	50756881	rs2076756	17068223	Duerr RH	2006-10-26	Science	A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.	Inflammatory bowel disease	547 European ancestry cases, 548 European ancestry controls	1,151 cases from 595 families, 433 controls	16q12.1	CARD15	rs2076756-?	NR	5E-10				Illumina [308332]	N
972	chr16	50762770	50762771	rs72796367	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16q12.1	NOD2	rs72796367-?	NR	1E-16	(subset analysis)			Illumina [130052]	N
972	chr16	50763779	50763779	rs2066847	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	16q12.1	NR	rs2066847-G	0.98	2E-9		0.71	[NR]	NR [8546065] (imputed)	N
972	chr16	50763779	50763779	rs2066847	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	16q12.1	NOD2, ADCY7	rs2066847-T	0.024	6E-209		3.103	[1.497-1.618]	Affymetrix, Illumina [1230000] (imputed)	N
972	chr16	50763779	50763779	rs2066847	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	16q12.1	NOD2	rs2066847-?	NR	2E-15		1.62	[1.42-1.86]	Illumina [304825]	N
972	chr16	50763779	50763779	rs2066847	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	16q12.1	NOD2	rs2066847-C	0.02	3E-24		3.99	[NR]	Affymetrix, Illumina [635547] (imputed)	N
972	chr16	50781801	50781802	rs8060598	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	16q12.1	NOD2, CYLD	rs8060598-C	0.167	5E-6		1.14	[NR]	Illumina [4577171] (imputed)	N
972	chr16	50790157	50790158	rs12324931	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	16q12.1	NOD2	rs12324931-C	0.04615	2E-9				Affymetrix [15688218] (imputed)	N
972	chr16	50827600	50827601	rs2302759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs2302759-?	NR	9E-9				NR [~ 8900000] (imputed)	N
972	chr16	50854417	50854418	rs16948876	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	16q12.1	NOD2, CYLD	rs16948876-A	0.041	4E-11		1.39	[NR]	Illumina [4577171] (imputed)	N
972	chr16	50854417	50854418	rs16948876	22019778	Zhang F	2011-10-23	Nat Genet	Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.	Leprosy	706 Han Chinese ancestry cases, 5,581 Han Chinese ancestry controls	3,301 Han Chinese ancestry cases, 5,299 Han Chinese ancestry controls	16q12.1	CYLD	rs16948876-A	0.03	2E-10		1.56	[1.36-1.79]	NR [1701673] (imputed)	N
973	chr16	50857692	50857693	rs1861760	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	16q12.1	CYLD	rs1861760-A	0.04	4E-8		1.28	[1.17-1.40]	Illumina [2387926] (imputed)	N
973	chr16	50863130	50863131	rs146030699	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	CYLD	rs146030699-C	0.99265	7E-10		0.068811	[0.047-0.091] unit decrease	NR [13737936] (imputed)	N
973	chr16	50866916	50866917	rs72798422	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q12.1		rs72798422-C	0.963911	3E-22		1.1136425	[1.09-1.14]	Affymetrix, Illumina [9851866] (imputed)	N
973	chr16	50892284	50892285	rs77350128	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	16q12.1	intergenic	rs77350128-C	NR	7E-6	(EA)			Illumina [up to 11995908] (imputed)	N
973	chr16	50908817	50908818	rs148319405	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q12.1	Intergenic	rs148319405-T	0.999	2E-7	(AA)	0.53	unit increase	Illumina [NR] (imputed)	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	6E-9	(Children)	1.6329753	[1.38-1.93]	Illumina [2612357]	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	4E-10		1.5971283	[1.38-1.85]	Illumina [2612357]	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Inflammatory bowel disease	622 Polish ancestry child cases, 496 Polish ancestry adult cases, 582 Polish ancestry controls	192 Polish ancestry child cases, 185 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	3E-6	(Adult)	1.5508206	[1.29-1.86]	Illumina [2612357]	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	6E-14	(Adults)	2.3493187	[1.89-2.92]	Illumina [2612357]	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	4E-22		2.2456965	[1.90-2.65]	Illumina [2612357]	N
973	chr16	50922785	50922786	rs13333062	28008999	Ostrowski J	2016-12-23	Sci Rep	Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.	Crohn's disease	353 Polish ancestry child cases, 237 Polish ancestry adult cases, 582 Polish ancestry controls	71 Polish ancestry child cases, 100 Polish ancestry adult cases, 352 Polish ancestry controls	16q12.1	Intergenic	rs13333062-?	NR	1E-15	(Children)	2.1826217	[1.81-2.64]	Illumina [2612357]	N
973	chr16	50932337	50932338	rs533655234	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	16q12.1	RP11-883G14.1	rs533655234-A	0.998	3E-6		1.1555	[0.67-1.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
973	chr16	50935530	50935531	rs4785469	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q12.1	Intergenic	rs4785469-T	0.7531	5E-15		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
973	chr16	50939788	50939789	rs4785475	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q12.1		rs4785475-G	0.74	8E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
973	chr16	50943194	50943195	rs34694866	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q12.1	CYLD	rs34694866-A	0.253	5E-11		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
973	chr16	50943791	50943792	rs4238818	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q12.1	CYLD	rs4238818-A	0.2543	3E-11		0.014775469	[0.01-0.019] unit decrease	Illumina [9339358] (imputed)	N
973	chr16	50945155	50945156	rs12918191	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q12.1	NR	rs12918191-G	0.243	2E-12		0.00886431	[0.0064-0.0113] unit decrease	NR [9732723] (imputed)	N
973	chr16	50945155	50945156	rs12918191	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q12.1	NR	rs12918191-G	0.243	3E-11		0.019727034	[0.014-0.026] unit decrease	NR [~ 10000000] (imputed)	N
973	chr16	50945155	50945156	rs12918191	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q12.1	ENSG00000261241	rs12918191-A	NR	4E-8		5.502	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
973	chr16	50950804	50950805	rs1567154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q12.1	Intergenic	rs1567154-T	0.2091	6E-18	(MTAG)	0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
973	chr16	50950804	50950805	rs1567154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.1	Intergenic	rs1567154-T	0.2091	3E-14	(MTAG)	0.0154	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
973	chr16	50950804	50950805	rs1567154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q12.1	Intergenic	rs1567154-T	0.2121	1E-13	(MTAG)	0.0208	[0.015-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
973	chr16	50951372	50951373	rs4785480	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q12.1	NR	rs4785480-C	0.239563	4E-9		0.043195825	[0.029-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
973	chr16	50951372	50951373	rs4785480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q12.1	Intergenic	rs4785480-T	0.2119	3E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
973	chr16	50986307	50986308	rs1564981	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs1564981-?	NR	1E-20		0.018635	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
973	chr16	50986307	50986308	rs1564981	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16q12.1	CYLD	rs1564981-A	0.455413	8E-9		0.0447	[0.03-0.06] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
973	chr16	50986307	50986308	rs1564981	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16q12.1	CYLD	rs1564981-A	0.455413	4E-7		0.0347	[0.021-0.048] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
973	chr16	50986307	50986308	rs1564981	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q12.1	CYLD, LOC101927334	rs1564981-G	0.48	1E-8	(Female)	0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
973	chr16	50986307	50986308	rs1564981	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q12.1	CYLD	rs1564981-A	0.5	2E-10		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
974	chr16	50999124	50999125	rs76742266	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs76742266-C	0.920032	3E-12		0.0252016	[0.018-0.032] unit decrease	NR [13737936] (imputed)	N
974	chr16	51007043	51007044	rs10852610	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs10852610-G	0.547889	5E-18		0.0175976	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
974	chr16	51013433	51013434	rs79028154	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs79028154-C	0.95305	1E-14		0.0345921	[0.026-0.043] unit decrease	NR [13737936] (imputed)	N
974	chr16	51021802	51021803	rs1566045	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q12.1	SALL1	rs1566045-T	0.8	2E-22		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
974	chr16	51025425	51025426	rs140144628	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs140144628-G	0.99261	7E-11		0.0661028	[0.046-0.086] unit decrease	NR [13737936] (imputed)	N
974	chr16	51025425	51025426	rs140144628	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs140144628-?	NR	3E-15		0.091283	[0.069-0.114] unit decrease	Affymetrix [20259828] (imputed)	N
974	chr16	51025467	51025468	rs62028332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs62028332-?	NR	2E-61				NR [~ 8900000] (imputed)	N
974	chr16	51025467	51025468	rs62028332	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs62028332-?	NR	5E-62		0.0485004	[0.042-0.055] unit decrease	Affymetrix [20259828] (imputed)	N
974	chr16	51025467	51025468	rs62028332	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LOC101927334	rs62028332-G	0.857659	7E-9	(men)	0.0428173	[0.027-0.058] unit decrease	NR [17166351] (imputed)	N
974	chr16	51025467	51025468	rs62028332	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LOC101927334	rs62028332-G	0.856564	5E-17		0.0427159	[0.033-0.053] unit decrease	NR [17166351] (imputed)	N
974	chr16	51025467	51025468	rs62028332	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LOC101927334	rs62028332-G	0.855607	7E-10	(women)	0.0423272	[0.028-0.056] unit decrease	NR [17166351] (imputed)	N
974	chr16	51028008	51028009	rs77718124	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs77718124-A	0.946864	2E-24		0.0421753	[0.034-0.05] unit decrease	NR [13737936] (imputed)	N
974	chr16	51061527	51061528	rs147153117	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q12.1	Intergenic	rs147153117-T	0.999	3E-6	(AA)	0.342	unit increase	Illumina [NR] (imputed)	N
974	chr16	51066964	51066965	rs4785495	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs4785495-?	NR	5E-15		0.0157711	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
974	chr16	51068284	51068285	rs17249128	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	16q12.1	LOC101927334	rs17249128-G	0.466	3E-7			[NR]	Illumina [625127]	N
974	chr16	51068284	51068285	rs17249128	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LOC101927334	rs17249128-G	0.50552	2E-11		0.012562	[0.0089-0.0162] unit increase	NR [13737936] (imputed)	N
974	chr16	51068284	51068285	rs17249128	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs17249128-?	NR	3E-12				NR [~ 8900000] (imputed)	N
974	chr16	51090600	51090601	rs1874467	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs1874467-C	0.84	1E-8		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
974	chr16	51095560	51095561	rs138937927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q12.1		rs138937927-T	NR	2E-18		0.0469	[0.036-0.057] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
974	chr16	51095560	51095561	rs138937927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q12.1	RP11-883G14.4	rs138937927-T	NR	2E-10		0.0631866	[0.044-0.083] unit decrease	Affymetrix [321114] (imputed)	N
974	chr16	51095560	51095561	rs138937927	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q12.1	NR	rs138937927-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
974	chr16	51095560	51095561	rs138937927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs138937927-?	NR	5E-30				NR [~ 8900000] (imputed)	N
974	chr16	51096970	51096971	rs8054651	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs8054651-G	0.931028	2E-11		0.0346396	[0.025-0.045] unit decrease	NR [NR]	N
974	chr16	51106858	51106859	rs17250080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs17250080-?	NR	3E-12				NR [~ 8900000] (imputed)	N
974	chr16	51111245	51111246	rs11640223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.1	NR	rs11640223-T	NR	2E-15		0.0235	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
975	chr16	51130462	51130463	rs12448756	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs12448756-A	0.805975	2E-20		0.0237551	[0.019-0.029] unit increase	NR [NR]	N
975	chr16	51155042	51155043	rs11076556	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q12.1	CYLD, SALL1	rs11076556-C	0.149898	2E-11	(propyl 4-hydroxybenzoate sulfate)	0.236	[0.17-0.3] unit increase	Illumina [13039987] (imputed)	N
975	chr16	51155042	51155043	rs11076556	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16q12.1	CYLD, SALL1	rs11076556-C	0.149898	2E-11	(propyl 4-hydroxybenzoate sulfate)	0.236	[0.17-0.3] unit increase	Illumina [13039987] (imputed)	N
975	chr16	51158709	51158710	rs10521222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q12.1	NR	rs10521222-T	NR	2E-15		0.0446	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
975	chr16	51158709	51158710	rs10521222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.1	NR	rs10521222-T	NR	9E-73		0.1014	[0.09-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr16	51158709	51158710	rs10521222	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	16q12.1	SALL1	rs10521222-C	0.05	2E-22		0.104	[0.082-0.126] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
975	chr16	51158709	51158710	rs10521222	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	16q12.1	SALL1	rs10521222-C	NR	9E-13		0.104	[0.07-0.13] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
975	chr16	51163119	51163120	rs35084376	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.1	NA	rs35084376-C	0.067	4E-8	(Female)	1.085	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
975	chr16	51165890	51165891	rs2111125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q12.1	NR	rs2111125-C	NR	1E-13		0.0186	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr16	51165890	51165891	rs2111125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.1	NR	rs2111125-C	NR	1E-55		0.0394	[0.035-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr16	51169233	51169234	rs751979	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	SALL1	rs751979-C	0.655802	2E-30		0.0224868	[0.019-0.026] unit decrease	NR [13737936] (imputed)	N
975	chr16	51170025	51170026	rs116971887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q12.1	NR	rs116971887-T	NR	8E-10		0.036	[0.024-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
975	chr16	51170025	51170026	rs116971887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q12.1	SALL1	rs116971887-T	0.045411	4E-16		0.044295106	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51170025	51170026	rs116971887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q12.1	SALL1	rs116971887-T	0.045412	5E-9		0.03196311	[0.021-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51170025	51170026	rs116971887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q12.1	SALL1	rs116971887-T	0.045417	2E-12		0.03827019	[0.028-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51170025	51170026	rs116971887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs116971887-T	0.0443815	4E-22				Affymetrix, Illumina [24332387] (imputed)	N
975	chr16	51170025	51170026	rs116971887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q12.1	NR	rs116971887-T	0.045913	5E-24		0.04532	[0.037-0.054] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
975	chr16	51170025	51170026	rs116971887	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs116971887-G	0.954751	2E-121		0.11664	[0.11-0.13] unit increase	NR [NR]	N
975	chr16	51170025	51170026	rs116971887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q12.1		rs116971887-?	NR	1E-21				NR [~ 8900000] (imputed)	N
975	chr16	51170025	51170026	rs116971887	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs116971887-T	0.05	9E-25	(BMI-adjusted)	0.118	[0.094-0.142] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
975	chr16	51170025	51170026	rs116971887	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs116971887-T	0.05	3E-20		0.113	[0.089-0.137] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
975	chr16	51172676	51172677	rs11645288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16q12.1		rs11645288-A	NR	3E-9		0.1955	[0.13-0.26] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
975	chr16	51173558	51173559	rs1965024	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs1965024-A	0.64	1E-18		0.039	[0.031-0.047] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
975	chr16	51177516	51177517	rs1015438	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q12.1	SALL1	rs1015438-G	0.81	1E-9		0.0067	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
975	chr16	51177516	51177517	rs1015438	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	16q12.1	SALL1	rs1015438-G	0.81	2E-7		0.0061	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
975	chr16	51177516	51177517	rs1015438	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.1	NR	rs1015438-A	0.1882	3E-14		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
975	chr16	51177516	51177517	rs1015438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q12.1	Intergenic	rs1015438-A	0.21	2E-11	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
975	chr16	51177516	51177517	rs1015438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q12.1	Intergenic	rs1015438-G	0.79	4E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr16	51181734	51181735	rs6416794	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q12.1		rs6416794-T	0.23	1E-26		10.67	z score increase	Affymetrix [9061022] (imputed)	N
975	chr16	51183727	51183728	rs11643654	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	16q12.1	NR	rs11643654-A	0.597	2E-8		0.012901172	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
975	chr16	51184957	51184958	rs12924434	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16q12.1	Intergenic	rs12924434-T	0.7771	1E-12		0.0194	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr16	51186223	51186224	rs149685227	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	SALL1	rs149685227-G	0.982258	5E-11		0.0426183	[0.03-0.055] unit increase	NR [13737936] (imputed)	N
975	chr16	51186223	51186224	rs149685227	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs149685227-?	NR	4E-15		0.0578285	[0.044-0.072] unit increase	Affymetrix [20259828] (imputed)	N
975	chr16	51186476	51186477	rs4785505	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q12.1	SALL1	rs4785505-C		1E-9		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
975	chr16	51187951	51187952	rs34678368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q12.1		rs34678368-G	NR	2E-17		0.0186	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
975	chr16	51187951	51187952	rs34678368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q12.1		rs34678368-G	NR	2E-14		0.0156	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
975	chr16	51187951	51187952	rs34678368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q12.1		rs34678368-G	NR	2E-16		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
975	chr16	51187951	51187952	rs34678368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q12.1	SALL1	rs34678368-G	0.647368	3E-14		0.018339021	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51187951	51187952	rs34678368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q12.1	SALL1	rs34678368-G	0.64735	2E-12		0.016913299	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51187951	51187952	rs34678368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q12.1	SALL1	rs34678368-G	0.647366	2E-15		0.01916385	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51187992	51187993	rs7501078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs7501078-?	NR	3E-31				NR [~ 8900000] (imputed)	N
975	chr16	51188431	51188432	rs2052285	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs2052285-?	NR	3E-34		0.0249968	[0.021-0.029] unit increase	Affymetrix [20259828] (imputed)	N
975	chr16	51188431	51188432	rs2052285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.1		rs2052285-A	0.5959	7E-15		0.0112	[0.0085-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr16	51188432	51188433	rs2052284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs2052284-A	0.591736	4E-16				Affymetrix, Illumina [24653286] (imputed)	N
975	chr16	51188432	51188433	rs2052284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q12.1	NR	rs2052284-A	0.60643	2E-18		0.01665	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
975	chr16	51188432	51188433	rs2052284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs2052284-A	0.592211	9E-23				Affymetrix, Illumina [24558453] (imputed)	N
975	chr16	51188432	51188433	rs2052284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q12.1	NR	rs2052284-A	0.606561	3E-24		0.019273	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
975	chr16	51190579	51190580	rs8058137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.1	Intergenic	rs8058137-A	0.7781	9E-19	(MTAG)	0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
975	chr16	51190579	51190580	rs8058137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.1	Intergenic	rs8058137-A	0.7878	3E-18	(MTAG)	0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
975	chr16	51190739	51190740	rs7205341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q12.1		rs7205341-C	NR	2E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
975	chr16	51190739	51190740	rs7205341	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.1		rs7205341-T	0.7883	3E-15	(conditional-joint)	0.0136	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr16	51205818	51205819	rs728538	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs728538-T	0.833058	1E-53		0.0424443	[0.037-0.048] unit decrease	NR [NR]	N
975	chr16	51211594	51211595	rs1108343	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	16q12.1	SALL1	rs1108343-T	0.36	1E-8		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
975	chr16	51211594	51211595	rs1108343	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	16q12.1	SALL1	rs1108343-T	0.36	1E-8		0.033	[0.022-0.044] unit increase	Affymetrix [at least 8900000] (imputed)	N
975	chr16	51223316	51223317	rs141651106	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs141651106-G	0.970754	1E-10		0.0388838	[0.027-0.051] unit decrease	NR [NR]	N
975	chr16	51224520	51224521	rs8046476	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.1	NR	rs8046476-?	NR	1E-54				Affymetrix [NR]	N
975	chr16	51225458	51225459	rs78703482	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs78703482-C	0.924614	5E-9		0.0243095	[0.016-0.032] unit decrease	NR [NR]	N
975	chr16	51237775	51237776	rs12925999	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q12.1		rs12925999-G	0.544141	5E-10		0.013825324	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
975	chr16	51237775	51237776	rs12925999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q12.1		rs12925999-?	NR	6E-13				NR [~ 8900000] (imputed)	N
975	chr16	51239416	51239417	rs7499584	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Diabetes mellitus	4,315 European ancestry cases, up to 29,116 European ancestry controls	NA	16q12.1	SALL1	rs7499584-A	0.297	2E-6		0.15939355	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
975	chr16	51245486	51245487	rs7185923	23643386	Hatoum IJ	2013-05-02	Am J Hum Genet	Weight loss after gastric bypass is associated with a variant at 15q26.1.	Weight loss (gastric bypass surgery)	693 European ancestry individuals	327 European ancestry individuals	16q12.1	SALL1	rs7185923-C	NR	4E-6		1.89	[1.09-2.69] unit decrease	Illumina [1943170] (imputed)	N
975	chr16	51248507	51248508	rs7500154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q12.1		rs7500154-A	0.544573	4E-9		0.0130999675	[0.0087-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
976	chr16	51258955	51258956	rs7206884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q12.1		rs7206884-A	NR	3E-10		0.0104	[0.0073-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
976	chr16	51259520	51259521	rs28604368	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	16q12.1		rs28604368-?	NR	2E-6		0.5233666	[0.31-0.74] unit increase	Illumina [9906551] (imputed)	N
976	chr16	51259520	51259521	rs28604368	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	16q12.1		rs28604368-?	NR	9E-6		0.617869	[0.35-0.89] unit increase	Illumina [9875426] (imputed)	N
976	chr16	51259520	51259521	rs28604368	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	16q12.1		rs28604368-?	NR	6E-7		0.7479413	[0.45-1.04] unit increase	Illumina [9842460] (imputed)	N
976	chr16	51259520	51259521	rs28604368	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	16q12.1		rs28604368-?	NR	7E-6		0.5337214	[0.3-0.76] unit increase	Illumina [9901720] (imputed)	N
976	chr16	51266275	51266276	rs117695016	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs117695016-A	0.961847	1E-9		0.0367434	[0.025-0.049] unit increase	NR [NR]	N
976	chr16	51272199	51272200	rs72795850	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC087564.1	rs72795850-?	NR	2E-8		1.99545	[NR] unit decrease	Affymetrix [NR] (imputed)	N
976	chr16	51272199	51272200	rs72795850	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC087564.1	rs72795850-?	NR	1E-9	(female)	1.66702	[NR] unit decrease	Affymetrix [NR] (imputed)	N
976	chr16	51272358	51272359	rs28678518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs28678518-?	NR	3E-8				NR [~ 8900000] (imputed)	N
976	chr16	51278532	51278533	rs61554960	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	16q12.1	LOC101928945	rs61554960-?	NR	6E-6		0.02	[NR] unit increase	Illumina [1365181]	N
976	chr16	51330530	51330531	rs4131099	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	16q12.1	intergenic	rs4131099-A	0.22	4E-6	(Novelty Seeking)	0.11	[NR] unit increase	Affymetrix, Illumina [1252387] (imputed)	N
976	chr16	51357481	51357482	rs17338034	26249676	Wolthusen RP	2015-08-07	World J Biol Psychiatry	Genetic underpinnings of left superior temporal gyrus thickness in patients with schizophrenia.	Left superior temporal gyrus thickness (schizophrenia interaction)	113 schizophrenia cases, 126 controls	NA	16q12.1	SALL1	rs17338034-A		6E-6		0.351	[NR] unit increase	Illumina [1067955] (imputed)	N
977	chr16	51383029	51383030	rs1420987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs1420987-?	NR	7E-8				NR [~ 8900000] (imputed)	N
977	chr16	51396726	51396727	rs11639803	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	16q12.1	SALL1	rs11639803-A	0.77	5E-14		0.02	unit increase	Affymetrix [8928767] (imputed)	N
977	chr16	51399700	51399701	rs73577882	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs73577882-T	0.977419	6E-14		0.0502864	[0.037-0.063] unit decrease	NR [NR]	N
977	chr16	51414417	51414418	rs9925497	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q12.1	NR	rs9925497-?	NR	3E-8				Illumina [7760689] (imputed)	N
977	chr16	51422685	51422686	rs1420996	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	SALL1	rs1420996-C	0.260038	2E-14		0.0163776	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
977	chr16	51423944	51423945	rs2052354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs2052354-?	NR	1E-21				NR [~ 8900000] (imputed)	N
977	chr16	51423944	51423945	rs2052354	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs2052354-?	NR	3E-21		0.0216327	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
977	chr16	51425822	51425823	rs62038917	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q12.1	SALL1, LOC101927364	rs62038917-G	0.78	1E-27		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
977	chr16	51428907	51428908	rs11646917	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	16q12.1	SALL1	rs11646917-T	NR	9E-9	(EA)	0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
977	chr16	51428907	51428908	rs11646917	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	16q12.1	SALL1	rs11646917-T	NR	5E-9		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
977	chr16	51428907	51428908	rs11646917	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	16q12.1	SALL1	rs11646917-T	0.27	2E-8	(EA)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51428907	51428908	rs11646917	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	16q12.1	SALL1	rs11646917-T	0.27	2E-8		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51436881	51436882	rs17616063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q12.1		rs17616063-G	NR	1E-26		0.0447	[0.036-0.053] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
977	chr16	51436881	51436882	rs17616063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q12.1		rs17616063-G	NR	2E-170		0.1262	[0.12-0.14] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
977	chr16	51436881	51436882	rs17616063	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16q12.1	SALL1	rs17616063-A	0.92537	5E-30		0.0107883	[0.0089-0.0127] unit decrease	Affymetrix [13995440] (imputed)	N
977	chr16	51436881	51436882	rs17616063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q12.1	NR	rs17616063-G	NR	2E-28		0.0504	[0.041-0.059] unit increase	Affymetrix [9000000] (imputed)	N
977	chr16	51436881	51436882	rs17616063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.1	NR	rs17616063-G	NR	8E-175		0.1287	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr16	51436881	51436882	rs17616063	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q12.1	MIR548AI	rs17616063-?		6E-16		0.1199	[0.091-0.149] unit decrease	Illumina [31500000] (imputed)	N
977	chr16	51436881	51436882	rs17616063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q12.1		rs17616063-G	0.074924	8E-12		0.028691024	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
977	chr16	51436881	51436882	rs17616063	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.1	NR	rs17616063-A	0.924303	7E-248		0.129406	[0.12-0.14] unit increase	NR [NR]	N
977	chr16	51436881	51436882	rs17616063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q12.1		rs17616063-?	NR	3E-14				NR [~ 8900000] (imputed)	N
977	chr16	51442633	51442634	rs35287272	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q12.1	SALL1	rs35287272-T	0.2908	1E-8		0.0121811135	[0.008-0.0164] unit decrease	Illumina [9339358] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	16q12.1	SALL1	rs1948948-C	0.5713	7E-9				Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	16q12.1	SALL1	rs1948948-C	0.56	7E-10				Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	16q12.1	SALL1	rs1948948-C	NR	2E-9		0.0349	[0.024-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	16q12.1	SALL1	rs1948948-C	0.56	2E-10		0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	16q12.1	SALL1	rs1948948-C	NR	1E-10		0.0365	[0.025-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	16q12.1	SALL1	rs1948948-C	0.5673	2E-9		0.0349	[0.024-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
977	chr16	51442678	51442679	rs1948948	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	16q12.1	TBX15, WARS2	rs1948948-?		1E-11				NR [7428630] (imputed)	N
977	chr16	51442678	51442679	rs1948948	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16q12.1	ZIC4, ZIC1	rs1948948-?		3E-11				NR [7428630] (imputed)	N
977	chr16	51442678	51442679	rs1948948	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q12.1	NR	rs1948948-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
977	chr16	51446383	51446384	rs11641011	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q12.1		rs11641011-T	0.45	3E-42		13.62	z score increase	Affymetrix [9061022] (imputed)	N
977	chr16	51446383	51446384	rs11641011	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q12.1	NR	rs11641011-T	0.4555	1E-17				NR [9056863] (imputed)	N
977	chr16	51446383	51446384	rs11641011	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	16q12.1	CALCRL, TFPI	rs11641011-?		5E-14				NR [7428630] (imputed)	N
977	chr16	51446706	51446707	rs4783789	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q12.1	SALL1	rs4783789-T	0.777678	1E-8		0.0095829	[0.0063-0.0129] unit increase	Affymetrix [12370749]	N
977	chr16	51447492	51447492	rs373836950	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	16q12.1	SALL1	rs373836950-C	0.8	4E-21		0.01	[0.0078-0.0122] unit increase	Affymetrix [at least 8002429] (imputed)	N
977	chr16	51449542	51449543	rs41318749	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q12.1	NR	rs41318749-?	NR	3E-7		0.0088317	[0.0054-0.0122] unit increase	Affymetrix [805426] (imputed)	N
977	chr16	51449977	51449978	rs7197215	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	16q12.1	SALL1	rs7197215-?		6E-12	(Insula)			Affymetrix, Illumina [NR] (imputed)	N
977	chr16	51450937	51450938	rs118106133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.1	NR	rs118106133-T	NR	1E-42		0.1095	[0.094-0.125] unit decrease	Affymetrix [9000000] (imputed)	N
977	chr16	51451318	51451319	rs6499196	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q12.1		rs6499196-T	0.31	2E-17		8.5	z score increase	Affymetrix [9061022] (imputed)	N
977	chr16	51451517	51451518	rs7200325	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q12.1	NR	rs7200325-T	0.3452	1E-17				NR [9056863] (imputed)	N
977	chr16	51451517	51451518	rs7200325	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs7200325-T	0.34	5E-7		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
977	chr16	51451682	51451683	rs17616633	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 20)	19,670 European ancestry individuals	NA	16q12.1		rs17616633-?	NR	2E-13				NR [9705931] (imputed)	N
977	chr16	51451682	51451683	rs17616633	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	16q12.1	RP11-437L7.1a	rs17616633-T		7E-11		6.024	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
977	chr16	51458289	51458290	rs1362756	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	16q12.1	SALL1	rs1362756-C	0.29	9E-11		0.033	[0.023-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51458289	51458290	rs1362756	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	16q12.1	SALL1	rs1362756-C	0.29	2E-11	(EA)	0.037	[0.025-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51458289	51458290	rs1362756	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Optic disc parameters	7,360 European ancestry individuals	4,455 European ancestry individuals	16q12.1	SALL1	rs1362756-C	0.28	5E-9		0.03	[0.02-0.04] mm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51462822	51462823	rs7196852	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	16q12.1	SALL1	rs7196852-A	0.7	2E-31		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
977	chr16	51463538	51463539	rs11643656	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q12.1	NR	rs11643656-G	0.825445	5E-9		0.00696728	[0.0048-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
977	chr16	51463538	51463539	rs11643656	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q12.1	NR	rs11643656-G	0.825445	2E-6		0.00649142	[0.0041-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
977	chr16	51463709	51463710	rs12445948	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	16q12.1	RP11-437L7.1	rs12445948-A	0.4972	9E-6		0.0258	[0.014-0.037] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
977	chr16	51464897	51464898	rs1420993	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	16q12.1	SALL1	rs1420993-G	0.293	3E-9		0.015	[0.0091-0.0209] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
977	chr16	51469725	51469726	rs8053277	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	16q12.1	intergenic	rs8053277-?	NR	3E-11		0.00495259	[-0.00027-0.01017] unit decrease	Affymetrix [25921788] (imputed)	N
977	chr16	51469725	51469726	rs8053277	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	16q12.1	intergenic	rs8053277-?	NR	3E-11		0.0176123	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
977	chr16	51469725	51469726	rs8053277	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q12.1	SALL1, LOC101927364	rs8053277-T	0.3	6E-38		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
977	chr16	51469725	51469726	rs8053277	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	16q12.1	SALL1	rs8053277-T	0.3	7E-25		0.00991	[0.008-0.0118] unit increase	Affymetrix [at least 8002429] (imputed)	N
977	chr16	51469725	51469726	rs8053277	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	16q12.1	SALL1	rs8053277-T	0.29	2E-18		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
977	chr16	51479948	51479949	rs1073990	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q12.1	NR	rs1073990-?		6E-12				NR [7428630] (imputed)	N
977	chr16	51481595	51481596	rs66998222	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	16q12.1	SALL1	rs66998222-G	0.84407	1E-9		1.098901	[1.06-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
977	chr16	51482320	51482321	rs1345467	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	16q12.1	SALL1	rs1345467-G	0.262	3E-11		0.03	[0.02-0.04] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
977	chr16	51482320	51482321	rs1345467	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	16q12.1	SALL1	rs1345467-G		4E-13	(EA)	0.035	[0.025-0.045] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
977	chr16	51482320	51482321	rs1345467	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	16q12.1	SALL1	rs1345467-G		2E-13		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
977	chr16	51482320	51482321	rs1345467	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	16q12.1	SALL1	rs1345467-G	NR	4E-13		0.01	[0.0080-0.0120] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
977	chr16	51484836	51484837	rs1544637	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16q12.1	UNGP1/LOC642659	rs1544637-T	0.487502	5E-7		1.01	[1.00-1.02]	Affymetrix [14661600] (imputed)	N
977	chr16	51485324	51485324	rs201465465	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q12.1		rs201465465-?	NR	4E-6		1.0747368	[1.04235157671454-1.10812833888621]	Illumina [up to 7827597] (imputed)	N
977	chr16	51487474	51487475	rs35797106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	16q12.1		rs35797106-G	NR	3E-9		0.0844	[0.056-0.112] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
977	chr16	51488128	51488129	rs12325192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	16q12.1		rs12325192-T	NR	1E-14		0.1508	[0.11-0.19] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
977	chr16	51488128	51488129	rs12325192	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	16q12.1	SALL1	rs12325192-C	0.821	3E-12		1.1235955	[1.09-1.15]	Affymetrix, Illumina [37144863] (imputed)	N
977	chr16	51488205	51488206	rs7187736	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	16q12.1	intergenic	rs7187736-G	0.087	8E-6				Illumina [331281]	N
977	chr16	51488205	51488206	rs7187736	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	16q12.1	RP11-437L7.1	rs7187736-A	0.7788	4E-6		0.0298	[0.017-0.043] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
978	chr16	51538762	51538763	rs2075199	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	16q12.1	SALL1, LOC101927364	rs2075199-T	0.2	4E-6		0.26	unit decrease	Illumina [5600000] (imputed)	N
978	chr16	51560760	51560761	rs62039768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16q12.1		rs62039768-A	NR	1E-8		0.0766	[0.05-0.103] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
978	chr16	51560760	51560761	rs62039768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q12.1		rs62039768-A	NR	1E-8		0.0592	[0.039-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
978	chr16	51560760	51560761	rs62039768	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16q12.1	7SK	rs62039768-A	0.0954804	1E-8		0.07656379	[0.05-0.103] unit increase	Affymetrix [7288503] (imputed)	N
978	chr16	51560760	51560761	rs62039768	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16q12.1	7SK	rs62039768-A	0.0957964	1E-8		0.059182256	[0.039-0.079] unit increase	Affymetrix [7288503] (imputed)	N
978	chr16	51561852	51561853	rs35582239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs35582239-?	NR	2E-12				NR [~ 8900000] (imputed)	N
978	chr16	51564939	51564940	rs16949899	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	16q12.1	SALL1	rs16949899-T	NR	3E-8	(right exocanthion-left cheilion distance)	0.126	NR unit decrease	Illumina [7029494] (imputed)	N
978	chr16	51571884	51571885	rs2720429	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q12.1	SALL1, LOC101927364	rs2720429-G	0.77	5E-22		0.0099	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
978	chr16	51571884	51571885	rs2720429	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	16q12.1	SALL1	rs2720429-G	0.77	2E-19		0.01	[0.0078-0.0122] unit decrease	Affymetrix [at least 8002429] (imputed)	N
978	chr16	51573118	51573119	rs28514893	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	16q12.1	NR	rs28514893-?		3E-6		2.49	[1.70-3.65]	Illumina [539473] (imputed)	N
978	chr16	51573118	51573119	rs28514893	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	16q12.1	SALL1	rs28514893-T	0.21	4E-18		0.02	unit increase	Affymetrix [8928767] (imputed)	N
978	chr16	51577195	51577196	rs2647995	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q12.1	NR	rs2647995-T	0.272366	6E-9		0.04098238	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
978	chr16	51577195	51577196	rs2647995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q12.1	Intergenic	rs2647995-T	0.7192	5E-9		0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
978	chr16	51577195	51577196	rs2647995	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q12.1	NR	rs2647995-T	NR	9E-11		6.488	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
978	chr16	51577729	51577730	rs2720424	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q12.1	NR	rs2720424-?	NR	3E-6		4.667	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
978	chr16	51590732	51590733	rs7195329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.1	Intergenic	rs7195329-A	0.2641	3E-11	(MTAG)	0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
978	chr16	51601947	51601948	rs114367221	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	16q12.1	SALL1, LINC01571	rs114367221-T	NR	2E-7		0.0674	unit increase	Illumina [15409056] (imputed)	N
978	chr16	51609946	51609947	rs2030114	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	16q12.1	SALL1	rs2030114-A	0.01	7E-13	(DBP, during intervention)	3.14	[2.28-4.00] mmHg decrease	Affymetrix [2216774] (imputed)	N
978	chr16	51609946	51609947	rs2030114	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	16q12.1	SALL1	rs2030114-A	0.01	2E-6	(MAP, during intervention)	4.12	[2.43-5.81] mmHg decrease	Affymetrix [2216774] (imputed)	N
978	chr16	51617063	51617064	rs1498776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q12.1	Intergenic	rs1498776-T	0.3045	3E-8	(MTAG)	0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
978	chr16	51622454	51622455	rs1498785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs1498785-?	NR	1E-9				NR [~ 8900000] (imputed)	N
978	chr16	51624128	51624129	rs2647978	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LINC01571	rs2647978-C	0.70947	3E-19		0.0184183	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
978	chr16	51624128	51624129	rs2647978	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs2647978-?	NR	2E-13		0.0157973	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
979	chr16	51660738	51660739	rs987714076	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q12.1		rs987714076-C	0.01484	4E-8		0.8299	[0.53-1.13] unit decrease	Illumina [16999305] (imputed)	N
979	chr16	51697873	51697874	rs6499762	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	16q12.1	SALL1	rs6499762-A	0.125	2E-11		0.421	[0.3-0.54] unit increase	Illumina [8400000] (imputed)	N
979	chr16	51697873	51697874	rs6499762	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	16q12.1	SALL1	rs6499762-A	0.125	6E-16		0.43	[0.33-0.53] unit increase	Illumina [8400000] (imputed)	N
979	chr16	51697873	51697874	rs6499762	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	16q12.1	SALL1	rs6499762-A	0.125	5E-15	(EA)	0.441	[0.33-0.55] unit increase	Illumina [8400000] (imputed)	N
979	chr16	51697873	51697874	rs6499762	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	16q12.1	SALL1	rs6499762-A	0.125	7E-17		0.471	[0.36-0.58] unit increase	Illumina [8400000] (imputed)	N
979	chr16	51715874	51715875	rs1381451	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	16q12.1	intergenic	rs1381451-?		7E-6				NR [~ 3000000] (imputed)	N
979	chr16	51733062	51733063	rs35392886	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LINC01571	rs35392886-C	0.3748	6E-23		0.0189633	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
979	chr16	51733062	51733063	rs35392886	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs35392886-?	NR	3E-22		0.0197534	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
979	chr16	51733404	51733405	rs2219647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q12.1		rs2219647-A	NR	1E-15		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
979	chr16	51733404	51733405	rs2219647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q12.1		rs2219647-A	NR	2E-28		0.0203	[0.017-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
979	chr16	51733404	51733405	rs2219647	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q12.1	LINC01571	rs2219647-A	0.2662	5E-9		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
979	chr16	51733404	51733405	rs2219647	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q12.1	LINC01571	rs2219647-A	0.2276	1E-6		0.022052	[0.013-0.031] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
979	chr16	51733404	51733405	rs2219647	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q12.1	NR	rs2219647-A	0.2828	2E-6	(men)	0.0261	[0.015-0.037] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
979	chr16	51735745	51735746	rs9932625	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q12.1	NR	rs9932625-A	0.23	2E-15		0.0172	[0.013-0.021] unit increase	NR [NR]	N
979	chr16	51735745	51735746	rs9932625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q12.1	LINC01571	rs9932625-A	0.2566	1E-23		0.003	[0.0024-0.0036] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
979	chr16	51735745	51735746	rs9932625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	16q12.1	LINC01571	rs9932625-A	0.2566	4E-7		0.0039	[0.0023-0.0055] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
979	chr16	51736894	51736895	rs35896397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q12.1		rs35896397-C	NR	4E-12		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
979	chr16	51754990	51754991	rs12935539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	16q12.1		rs12935539-C	0.316002	2E-9		0.0186328	[0.013-0.025] unit increase	Illumina [13478778] (imputed)	N
979	chr16	51754990	51754991	rs12935539	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q12.1	SALL1	rs12935539-C	0.2736	3E-17		8.44	NR z score decrease	Illumina [26237160] (imputed)	N
979	chr16	51754990	51754991	rs12935539	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q12.1	SALL1	rs12935539-?	NR	2E-14				Affymetrix, Illumina [at least 5248638] (imputed)	N
979	chr16	51754990	51754991	rs12935539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	16q12.1	SALL1, LINC01571	rs12935539-?	NR	4E-9		0.02396	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
979	chr16	51754990	51754991	rs12935539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	16q12.1	SALL1, LINC01571	rs12935539-?	NR	9E-10		0.02436	[0.017-0.032] unit increase novel	Illumina [6108953] (imputed)	N
979	chr16	51755370	51755371	rs12927956	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	16q12.1		rs12927956-C	0.778366	2E-8		0.0238523	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
979	chr16	51755370	51755371	rs12927956	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16q12.1	NR	rs12927956-T	0.245	1E-12		0.0029	[0.0021-0.0037] unit decrease	Affymetrix [NR] (imputed)	N
979	chr16	51757241	51757242	rs34869093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs34869093-?	NR	1E-10				NR [~ 8900000] (imputed)	N
979	chr16	51758115	51758116	rs9932220	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	16q12.1	SALL1, LINC0157144	rs9932220-?	NR	2E-8				NR [~ 24000000] (imputed)	N
979	chr16	51758115	51758116	rs9932220	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	16q12.1	C16orf97	rs9932220-G	0.7823	4E-14		0.1591	[0.12-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
979	chr16	51758115	51758116	rs9932220	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs9932220-?	NR	1E-51		0.0363862	[0.031-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
979	chr16	51758115	51758116	rs9932220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs9932220-G	0.781798	5E-11	(women)	0.0362547	[0.025-0.047] unit decrease	NR [17166351] (imputed)	N
979	chr16	51758115	51758116	rs9932220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs9932220-G	0.781238	4E-18		0.0330394	[0.025-0.041] unit decrease	NR [17166351] (imputed)	N
979	chr16	51758115	51758116	rs9932220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs9932220-G	0.780596	1E-8	(men)	0.0302613	[0.018-0.042] unit decrease	NR [17166351] (imputed)	N
979	chr16	51761083	51761084	rs12920176	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q12.1	LINC01571	rs12920176-A	0.5893	2E-15		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
979	chr16	51761695	51761696	rs7184096	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q12.1	SALL1	rs7184096-T	0.139	2E-7		0.277	[0.034-0.52] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
980	chr16	51784917	51784918	rs7191269	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LINC01571	rs7191269-A	0.598579	1E-51		0.0289799	[0.025-0.033] unit increase	NR [13737936] (imputed)	N
980	chr16	51784917	51784918	rs7191269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs7191269-?	NR	6E-61				NR [~ 8900000] (imputed)	N
980	chr16	51784917	51784918	rs7191269	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs7191269-?	NR	9E-62		0.0337215	[0.03-0.038] unit increase	Affymetrix [20259828] (imputed)	N
980	chr16	51810792	51810793	rs79376728	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	16q12.1	SALL1	rs79376728-T	0.29	9E-8		0.024	[0.014-0.034] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
980	chr16	51828328	51828329	rs142076278	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	16q12.1	LINC01571;C16orf97	rs142076278-?	NR	1E-7				NR [~ 24000000] (imputed)	N
980	chr16	51828328	51828329	rs142076278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q12.1		rs142076278-?	NR	1E-12				NR [~ 8900000] (imputed)	N
980	chr16	51841045	51841046	rs35057083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q12.1	RP11-7O14.1	rs35057083-C	NR	1E-8		0.0174179	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
980	chr16	51847797	51847798	rs9935845	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs9935845-?	NR	3E-54		0.0313869	[0.027-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
980	chr16	51860915	51860916	rs1386075	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q12.1	LINC01571, C16orf97	rs1386075-?	NR	3E-8		0.01771592	[0.011-0.024] unit increase	Illumina [27896057] (imputed)	N
980	chr16	51899859	51899860	rs1486437	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	16q12.1	intergenic	rs1486437-A	NR	9E-6		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
980	chr16	51899876	51899877	rs1110494	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LINC01571	rs1110494-C	0.677814	1E-18		0.0179061	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
980	chr16	51900170	51900171	rs1080014	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	16q12.1	TOX3	rs1080014-C	0.519	1E-7		0.179	[0.11-0.25] unit increase	Illumina [8400000] (imputed)	N
980	chr16	51900170	51900171	rs1080014	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	16q12.1	TOX3	rs1080014-C	0.514	2E-8	(EA)	0.203	[0.13-0.27] unit increase	Illumina [8400000] (imputed)	N
980	chr16	51900170	51900171	rs1080014	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	16q12.1	TOX3	rs1080014-C	0.514	3E-7		0.184	[0.11-0.25] unit increase	Illumina [8400000] (imputed)	N
980	chr16	51902301	51902302	rs11643929	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs11643929-?	NR	1E-12		0.0153548	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
980	chr16	51902301	51902302	rs11643929	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs11643929-C	0.669054	4E-6		0.0171147	[0.01-0.024] unit increase	NR [17166351] (imputed)	N
980	chr16	51903469	51903470	rs11076194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs11076194-?	NR	5E-45				NR [~ 8900000] (imputed)	N
980	chr16	51903980	51903981	rs72805220	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.1	LINC01571	rs72805220-C	0.934977	2E-50		0.0571938	[0.05-0.065] unit increase	NR [13737936] (imputed)	N
980	chr16	51903980	51903981	rs72805220	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.1		rs72805220-?	NR	3E-60		0.0667623	[0.059-0.075] unit increase	Affymetrix [20259828] (imputed)	N
980	chr16	51903980	51903981	rs72805220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs72805220-C	0.935187	9E-17	(men)	0.0815547	[0.061-0.102] unit increase	NR [17166351] (imputed)	N
980	chr16	51903980	51903981	rs72805220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs72805220-C	0.934618	7E-21		0.0634384	[0.05-0.077] unit increase	NR [17166351] (imputed)	N
980	chr16	51903980	51903981	rs72805220	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.1	LINC01571	rs72805220-C	0.93412	2E-8	(women)	0.0526435	[0.034-0.071] unit increase	NR [17166351] (imputed)	N
981	chr16	51926508	51926509	rs17795934	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q12.1	LINC01571, C16orf97	rs17795934-C	0.28	2E-8	(Male)	0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
981	chr16	51961542	51961543	rs11076221	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	16q12.1	C16orf97	rs11076221-G	0.94	9E-6		1.57	[1.37-1.77]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
981	chr16	52007175	52007176	rs1362404	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	16q12.1	TOX3	rs1362404-T	NR	2E-8	(Lactobacillales order)	0.23	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
981	chr16	52021629	52021630	rs4784958	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.1		rs4784958-?	NR	3E-11				NR [~ 8900000] (imputed)	N
982	chr16	52093026	52093027	rs12599074	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	16q12.1	NR	rs12599074-A	0.608	1E-10		0.0143378	[0.01-0.0187] unit decrease	NR [9732723] (imputed)	N
982	chr16	52093548	52093549	rs1592485	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	16q12.1	NR	rs1592485-A	0.611	1E-10		0.016153201	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
982	chr16	52112311	52112312	rs3743794	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.1	C16orf97, TOX3	rs3743794-G	0.39270000000000005	6E-9		1.0217328		Affymetrix [11880941] (imputed)	N
982	chr16	52129101	52129102	rs17201148	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q12.1	C16orf97	rs17201148-A	0.4212	9E-10		0.012029053	[0.0082-0.0159] unit decrease	Illumina [9339358] (imputed)	N
982	chr16	52165704	52165705	rs62039871	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16q12.1	NR	rs62039871-?	NR	5E-6		0.055915385	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
983	chr16	52166706	52166707	rs1344490	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.1	C16orf97, TOX3	rs1344490-T	0.4025	4E-8		0.00951045	[0.0061-0.0129] unit decrease	Affymetrix [11880941] (imputed)	N
983	chr16	52218151	52218152	rs8054155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q12.1		rs8054155-?	NR	3E-9				NR [~ 8900000] (imputed)	N
983	chr16	52227938	52227939	rs12925859	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	16q12.1	LOC105371261	rs12925859-?		4E-6				Illumina [7405822] (imputed)	N
983	chr16	52262956	52262956	rs965498542	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	16q12.1		rs965498542-?	NR	5E-6				Illumina [7401356] (imputed)	N
983	chr16	52266817	52266818	rs16950964	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q12.1		rs16950964-?	NR	2E-8				NR [NR]	N
983	chr16	52291938	52291939	rs1362376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16q12.1		rs1362376-?	NR	2E-16				NR [~ 8900000] (imputed)	N
984	chr16	52300254	52300255	rs10521261	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	16q12.1	C16orf97, TOX3	rs10521261-T	0.801142	3E-7		0.0339	[0.018-0.05] unit increase	Illumina [1220000] (imputed)	N
984	chr16	52303106	52303107	rs34214423	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.1	NR	rs34214423-A	0.8087	3E-9		1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
984	chr16	52307075	52307076	rs12325489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.1		rs12325489-?	NR	1E-8				NR [~ 8900000] (imputed)	N
984	chr16	52311578	52311579	rs35717469	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.1	NA	rs35717469-A	0.8132	2E-8	(Female)	1.055	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
984	chr16	52321975	52321976	rs16951021	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	16q12.1	intergenic	rs16951021-T	0.01	3E-7			[NR]	Affymetrix [398699]	N
984	chr16	52347818	52347819	rs4784165	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	16q12.1	TOX3	rs4784165-G	0.325	4E-11		1.15	[NR]	Affymetrix [NR] (imputed)	N
984	chr16	52359860	52359861	rs12919005	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	16q12.1	TOX3	rs12919005-C	NR	4E-7		2.85	percent increase	Affymetrix [8762422] (imputed)	N
984	chr16	52375776	52375777	rs8043701	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	16q12.1	TOX3	rs8043701-A	0.82	1E-9		0.1273	[0.087-0.168] unit decrease	Illumina [> 10000000] (imputed)	N
985	chr16	52442688	52442689	rs12921005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q12.1		rs12921005-?	NR	3E-8				NR [~ 8900000] (imputed)	N
985	chr16	52442688	52442689	rs12921005	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.1		rs12921005-A	0.505	1E-8	(conditional-joint)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
985	chr16	52447413	52447414	rs1345389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q12.1	CHD9	rs1345389-?	NR	2E-6	(TAG 58:6)	0.18896477	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
985	chr16	52457863	52457864	rs1420538	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q12.1	CHD9	rs1420538-?	NR	9E-6	(TAG 56:6)	0.15244831	[0.085-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
985	chr16	52475968	52475969	rs8062936	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	16q12.1		rs8062936-G	0.371	2E-7		0.122292	[0.077-0.167] unit increase	Affymetrix, Illumina [538635] (imputed)	N
985	chr16	52505166	52505167	rs79025327	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)(time to event)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	16q12.1	TOX3	rs79025327-?		7E-8	(East Asian)	3.12	[2.71-3.53]	Illumina [up to 8000000] (imputed)	N
985	chr16	52505166	52505167	rs79025327	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	16q12.1	TOX3	rs79025327-?		5E-7	(East Asian)	4.87	[4.24-5.5]	Illumina [up to 8000000] (imputed)	N
985	chr16	52505166	52505167	rs79025327	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)(time to event)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	16q12.1	TOX3	rs79025327-?		6E-9		2.9	[2.04-4.22]	Illumina [up to 8000000] (imputed)	N
985	chr16	52505166	52505167	rs79025327	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	16q12.1	TOX3	rs79025327-?		2E-7		3.8	[2.28-6.23]	Illumina [up to 8000000] (imputed)	N
985	chr16	52530762	52530763	rs8064219	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q12.1		rs8064219-G	NR	6E-8		1.068	[1.043-1.094]	Affymetrix [7846216] (imputed)	N
985	chr16	52538336	52538337	rs7184835	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	16q12.1	NR	rs7184835-T	0.5148	3E-10	(Caudal Middle Frontal)	10.225762	[7.05-13.4] unit decrease	Affymetrix, Illumina [NR]	N
985	chr16	52539596	52539597	rs9933638	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16q12.1	NR	rs9933638-A	NR	3E-8		5.562	z score increase	Affymetrix [10847151] (imputed)	N
985	chr16	52549934	52549935	rs1362546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16q12.1		rs1362546-?	NR	3E-8				NR [~ 8900000] (imputed)	N
985	chr16	52555741	52555742	rs8046979	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q12.1		rs8046979-G	0.49	3E-14		7.61	z score increase	Affymetrix [9061022] (imputed)	N
985	chr16	52555741	52555742	rs8046979	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q12.1	NR	rs8046979-G	0.4635	2E-13				NR [9056863] (imputed)	N
986	chr16	52566453	52566454	rs2193094	25956309	Palomba G	2015-05-10	BMC Cancer	Genome-wide association study of susceptibility loci for breast cancer in Sardinian population.	Breast cancer	1,367 Sardinian cases, 1,658 Sardinian controls	201 Sardinian cases, 1,467 Sardinian controls, 61,485 European ancestry cases, 60,860 European ancestry controls	16q12.1	TOX3	rs2193094-?	0.478	2E-7		1.337	(1.198-1.491)	Affymetrix [2067645] (imputed)	N
986	chr16	52570968	52570969	rs11648477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q12.1	NR	rs11648477-C	0.209842	2E-11		0.015293	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
986	chr16	52570968	52570969	rs11648477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q12.1	NR	rs11648477-C	0.209921	2E-14		0.017408	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
986	chr16	52571435	52571436	rs4783780	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	16q12.1	TOX3	rs4783780-A	0.5333	1E-8				NR [7320282]	N
986	chr16	52575906	52575907	rs4784223	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	16q12.1	TOX3	rs4784223-?	0.29	6E-21		1.27	[1.21-1.34]	Illumina [1265548] (imputed)	N
986	chr16	52580246	52580247	rs4784224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q12.1		rs4784224-A	0.49	3E-25		10.38	z score increase	Affymetrix [9061022] (imputed)	N
986	chr16	52580246	52580247	rs4784224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q12.1		rs4784224-A	0.49	1E-13		7.42	z score increase	Affymetrix [9061022] (imputed)	N
986	chr16	52580246	52580247	rs4784224	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q12.1	NR	rs4784224-A	0.4643	9E-15				NR [9056863] (imputed)	N
986	chr16	52580246	52580247	rs4784224	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16q12.1	NR	rs4784224-A	0.471428057885853	1E-8		0.010642208	[0.007-0.0143] unit decrease	NR [NR]	N
986	chr16	52580499	52580500	rs3095602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q12.1		rs3095602-?	NR	1E-8				NR [~ 8900000] (imputed)	N
986	chr16	52581046	52581047	rs117469893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q12.1		rs117469893-G	NR	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
986	chr16	52581046	52581047	rs117469893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q12.1	TOX3	rs117469893-G	0.210606	5E-9		0.015867813	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr16	52581046	52581047	rs117469893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q12.1	TOX3	rs117469893-G	0.210599	8E-11		0.017642573	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr16	52583846	52583847	rs3095605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q12.1	TOX3	rs3095605-?		2E-9				NR [7428630] (imputed)	N
986	chr16	52586340	52586341	rs3803662	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	16q12.1	NR	rs3803662-A	0.26	3E-86		1.24	[1.21-1.26]	Affymetrix, Illumina [~ 14000000] (imputed)	N
986	chr16	52586340	52586341	rs3803662	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	16q12.1	NR	rs3803662-A	0.26	4E-117		1.24	[1.21-1.26]	Affymetrix, Illumina [~ 11600000] (imputed)	N
986	chr16	52586340	52586341	rs3803662	24143190	Low SK	2013-10-15	PLoS One	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls	2,885 Japanese ancestry cases, 3,395 Japanese ancestry controls	16q12.1	TOX3, LOC643714	rs3803662-T	0.522	3E-11		1.213	[1.146-1.284]	Illumina [5335291] (imputed)	N
986	chr16	52586340	52586341	rs3803662	23544012	Gaudet MM	2013-03-27	PLoS Genet	Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.	Breast cancer in BRCA2 mutation carriers	4,330 European ancestry affected women, 3,881 European ancestry unaffected women	NA	16q12.1	TOX3	rs3803662-A	0.27	5E-11		1.24	[1.16-1.32]	Illumina [at least 200908] (imputed)	N
986	chr16	52586340	52586341	rs3803662	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.1	TOX3	rs3803662-T	0.267	6E-13		1.14	[1.10-1.18]	Illumina [NR]	N
986	chr16	52586340	52586341	rs3803662	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q12.1	TOX3	rs3803662-A	0.26	2E-114		1.24	[1.21-1.27]	Affymetrix, Illumina [~ 2600000] (imputed)	N
986	chr16	52586340	52586341	rs3803662	23001122	Orr N	2012-09-23	Nat Genet	Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk.	Breast cancer (male)	823 European ancestry cases, 2,795 European ancestry controls	438 European ancestry cases, 474 European ancestry controls	16q12.1	LOC643174, TOX3	rs3803662-?	NR	4E-15		1.5	[1.35-1.66]	Illumina [447760]	N
986	chr16	52586340	52586341	rs3803662	20872241	Li J	2010-09-26	Breast Cancer Res Treat	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry female cases, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	16q12.1	TOX3	rs3803662-A	0.30	4E-7		1.22	[1.13-1.32]	Illumina [285984]	N
986	chr16	52586340	52586341	rs3803662	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	16q12.1	TOX3	rs3803662-A	0.26	3E-15		1.3	[1.22-1.39]	Illumina [582886]	N
986	chr16	52586340	52586341	rs3803662	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	16q12.1	TOX3	rs3803662-T	0.27	1E-9		1.16	[1.07-1.27] (Het)	Illumina [528173]	N
986	chr16	52586340	52586341	rs3803662	17529974	Stacey SN	2007-05-27	Nat Genet	Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer.	Breast cancer	1,599 European ancestry cases, 11,546 European ancestry controls	2,954 European ancestry cases, 5,967 European ancestry controls, Up to 561 Japanese ancestry cases, Up to 565 Japanese ancestry control, Up to 422 African American cases, Up to 448 African American controls, Up to 418 Hispanic cases, Up to 422 Hispanic controls, Up to 148 cases, Up to 293 controls	16q12.1	TNRC9	rs3803662-T	0.27	6E-19		1.28	[1.21-1.35]	Illumina [311524]	N
986	chr16	52586340	52586341	rs3803662	17529967	Easton DF	2007-05-27	Nature	Genome-wide association study identifies novel breast cancer susceptibility loci.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	4,364 East Asian ancestry cases, 24,174 European ancestry controls, 3,564 East Asian ancestry controls, 24,391 European ancestry controls	16q12.1	TNRC9, LOC643714	rs3803662-T	0.25	1E-36		1.2	[1.16-1.24]	Perlegen [205586]	N
986	chr16	52586476	52586477	rs3803661	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	16q12.1		rs3803661-A	0.63	4E-8	(conditional)	1.08	[1.05-1.12]	Affymetrix, Illumina [NR] (imputed)	N
986	chr16	52599187	52599188	rs4784227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	16q12.1		rs4784227-T	0.22859754	1E-28		0.2545143	[0.21-0.3] unit increase	Illumina [13401000] (imputed)	N
986	chr16	52599187	52599188	rs4784227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	16q12.1		rs4784227-T	NR	4E-92		0.2382	[0.22-0.26] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
986	chr16	52599187	52599188	rs4784227	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16q12.1		rs4784227-?	NR	3E-8		1.04522	[1.03-1.06]	NR [688737]	N
986	chr16	52599187	52599188	rs4784227	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	16q12.1		rs4784227-?	NR	1E-44		1.25172	[1.22-1.28]	NR [682398]	N
986	chr16	52599187	52599188	rs4784227	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16q12.1		rs4784227-T	0.2395	3E-9		0.13705717	[0.086-0.188] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
986	chr16	52599187	52599188	rs4784227	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	16q12.1		rs4784227-T	0.2354	2E-8		0.09457667	[0.06-0.129] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
986	chr16	52599187	52599188	rs4784227	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	16q12.1		rs4784227-T	NR	8E-82		1.2685527	NR	Affymetrix [7846216] (imputed)	N
986	chr16	52599187	52599188	rs4784227	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	16q12.1	NR	rs4784227-?		7E-39		1.27	[NR]	NR [41502298] (imputed)	N
986	chr16	52599187	52599188	rs4784227	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	16q12.1		rs4784227-T	0.229797027	4E-21		1.249785	[1.19319124-1.309062956]	Illumina [8919992] (imputed)	N
986	chr16	52599187	52599188	rs4784227	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q12.1		rs4784227-T	NR	2E-240		1.24	[1.22-1.25]	Affymetrix, Illumina [NR] (imputed)	N
986	chr16	52599187	52599188	rs4784227	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	16q12.1	TOX3, CASC16	rs4784227-T	0.235	2E-24		1.271	[1.214-1.331]	Illumina [4946503] (imputed)	N
986	chr16	52599187	52599188	rs4784227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q12.1		rs4784227-?	NR	2E-8				NR [~ 8900000] (imputed)	N
986	chr16	52599187	52599188	rs4784227	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	16q12.1	TOX3	rs4784227-T	0.32	9E-9		1.31	[1.19-1.44]	Affymetrix, Illumina [3378933] (imputed)	N
986	chr16	52599187	52599188	rs4784227	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	16q12.1	CASC16, TOX3	rs4784227-T	0.26	2E-9		1.31	[NR]	Affymetrix, Illumina [3378933] (imputed)	N
986	chr16	52599187	52599188	rs4784227	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.1	TOX3	rs4784227-T	0.24	7E-201		1.23	[1.2-1.25] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
986	chr16	52599187	52599188	rs4784227	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.1	NR	rs4784227-T	0.24	2E-26		1.14	[1.10-1.19] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
986	chr16	52599187	52599188	rs4784227	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	16q12.1	TOX3	rs4784227-T	0.265	1E-10		1.09	[1.06-1.12]	Illumina [11933700] (imputed)	N
986	chr16	52599187	52599188	rs4784227	28864454	Lacson JCA	2017-09-01	Cancer Epidemiol Biomarkers Prev	Genome-Wide Testing of Exonic Variants and Breast Cancer Risk in the California Teachers Study.	Breast cancer (estrogen-receptor positive)	1,325 cases, 1,310 controls	NA	16q12.1	CASC16	rs4784227-T		7E-6		1.23		Illumina [129771]	N
986	chr16	52599187	52599188	rs4784227	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.1	TOX3	rs4784227-?	0.24	1E-14		1.15	[1.11-1.19]	Illumina [10909381] (imputed)	N
986	chr16	52599187	52599188	rs4784227	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	16q12.1	TOX3	rs4784227-?	0.26	6E-15		1.07	[1.02-1.12] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
986	chr16	52599187	52599188	rs4784227	25327703	Fejerman L	2014-10-20	Nat Commun	Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25.	Breast cancer	1,497 Latino cases, 3,213 Latino controls	1,643 Latino cases, 4,971 Latino controls	16q12.1	TOX3	rs4784227-T	0.31	3E-9		1.38	[1.24-1.54]	Affymetrix, Illumina [7229558] (imputed)	N
986	chr16	52599187	52599188	rs4784227	20585626	Long J	2010-06-24	PLoS Genet	Identification of a functional genetic variant at 16q12.1 for breast cancer risk: results from the Asia Breast Cancer Consortium.	Breast cancer	2,073 Chinese ancestry cases, 2,084 Chinese ancestry controls	15,159 East Asian ancestry cases, 12,993 East Asian ancestry controls, 2,797 European ancestry cases, 2,662 European ancestry controls	16q12.1	TOX3	rs4784227-T	0.24	1E-28	(all races combined)	1.24	[1.20-1.29]	Affymetrix [684457]	N
986	chr16	52621219	52621220	rs66954828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs66954828-A	0.209753	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
986	chr16	52621219	52621220	rs66954828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.1	NR	rs66954828-A	0.210542	4E-14				Affymetrix, Illumina [24558453] (imputed)	N
986	chr16	52622418	52622419	rs3112629	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q12.1	NA	rs3112629-G		3E-11		0.0148044	[0.01-0.019] unit increase	Illumina [13288253] (imputed)	N
986	chr16	52624445	52624446	rs2335	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q12.1		rs2335-T	NR	1E-9		1.113	[1.075-1.152]	Affymetrix [7846216] (imputed)	N
986	chr16	52624737	52624738	rs3104767	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	16q12.1	TOX3, BC034767	rs3104767-G	0.58	9E-19		1.35	[1.27-1.43]	Affymetrix [301406]	N
986	chr16	52632729	52632730	rs45544231	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	16q12.1	NR	rs45544231-G	0.42	4E-80		0.81	[0.79-0.83]	Affymetrix, Illumina [15838848] (imputed)	N
986	chr16	52632729	52632730	rs45544231	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	16q12.1	TOX3	rs45544231-C	0.58	7E-133		1.2048193	[1.19-1.23]	Affymetrix, Illumina [6864281] (imputed)	N
986	chr16	52633651	52633652	rs3104778	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16q12.1	LOC643714	rs3104778-A	0.589387	1E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
986	chr16	52633651	52633652	rs3104778	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16q12.1	LOC643714	rs3104778-A	0.589387	1E-7		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
986	chr16	52634999	52635000	rs12922061	24143190	Low SK	2013-10-15	PLoS One	Genome-wide association study of breast cancer in the Japanese population.	Breast cancer	2,642 Japanese ancestry cases, 2,099 Japanese ancestry controls	2,885 Japanese ancestry cases, 3,395 Japanese ancestry controls	16q12.2	TOX3, LOC643714	rs12922061-T	0.241	4E-10		1.231	[1.153-1.314]	Illumina [5335291] (imputed)	N
986	chr16	52635163	52635164	rs3112612	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	16q12.2	TOX3	rs3112612-T	0.43	4E-10		1.15	[1.10-1.21]	Illumina [~ 296114]	N
986	chr16	52636241	52636242	rs3104783	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16q12.2	CASC16	rs3104783-A	0.4343	1E-12		0.0668	[0.048-0.085] unit increase	NR [7784415] (imputed)	N
986	chr16	52637891	52637892	rs45453598	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.2	NR	rs45453598-A	0.169	4E-9		1.048	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
986	chr16	52638502	52638503	rs3104788	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q12.2	CASC16	rs3104788-?		4E-7				Illumina [4322238] (imputed)	N
986	chr16	52684915	52684916	rs12927162	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 10pm-12am)	88,411 European ancestry individuals	NA	16q12.2		rs12927162-G	0.277	1E-9		0.032	unit increase	Affymetrix [8951705] (imputed)	N
986	chr16	52684915	52684916	rs12927162	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q12.2		rs12927162-A	0.7237	2E-32		0.028	[0.024-0.032] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
986	chr16	52684915	52684916	rs12927162	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.2	NA	rs12927162-G	0.2763	4E-9	(Male)	1.066098	[1.04-1.09]	Affymetrix, Illumina [NR] (imputed)	N
986	chr16	52684915	52684916	rs12927162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q12.2	TOX3, CHD9	rs12927162-A	0.7276	6E-38		1.0544		Affymetrix [11880941] (imputed)	N
986	chr16	52684915	52684916	rs12927162	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.2	TOX3, CHD9	rs12927162-A	0.7276	6E-38		1.0577035		Affymetrix [11880941] (imputed)	N
986	chr16	52684915	52684916	rs12927162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	16q12.2		rs12927162-?	NR	7E-21				NR [~ 8900000] (imputed)	N
986	chr16	52684915	52684916	rs12927162	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	16q12.2	TOX3	rs12927162-A	0.74	2E-12		1.098901		Illumina [7427422] (imputed)	N
987	chr16	52746088	52746089	rs4238755	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q12.2	NR	rs4238755-C	0.7362	2E-10		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
987	chr16	52751831	52751832	rs1420253	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q12.2	Intergenic	rs1420253-A	0.6073	3E-9	(MTAG)	0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
987	chr16	52775730	52775731	rs11075624	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.2	Intergenic	rs11075624-T	0.607	3E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
987	chr16	52807979	52807980	rs4784254	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 199)	19,670 European ancestry individuals	NA	16q12.2		rs4784254-?	NR	2E-8				NR [9705931] (imputed)	N
987	chr16	52814558	52814559	rs4784256	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	16q12.2	NR	rs4784256-A	0.3992	9E-12		6.823	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
987	chr16	52814558	52814559	rs4784256	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	16q12.2	NR	rs4784256-?	NR	9E-6				Illumina [7427422] (imputed)	N
987	chr16	52818467	52818468	rs12446341	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16q12.2	OR2B6, LRRC16A, SCGN, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H2BC, HIST1H2AC, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H3G, HIST1H2BI, BTN3A2, BTN2A2, BTN3A1, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, POM121L2, ZNF391, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, ZNF165, ZSCAN16, ZKSCAN8, ZSCAN9, ZKSCAN4, NKAPL, PGBD1, ZSCAN31, ZKSCAN3, ZSCAN12, ZSCAN23, GPX6, SCAND3, TRIM27, C6orf100, ZNF311, OR2W1, OR2B3, OR2J1, OR2J3, OR2J2, OR14J1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, UBD, GABBR1, OR2H2	rs12446341-?		3E-11				NR [7428630] (imputed)	N
988	chr16	52831461	52831462	rs6499100	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	16q12.2	intergenic	rs6499100-A	0.519	1E-6		1.26	[1.14-1.4]	Illumina [516131]	N
988	chr16	52877148	52877149	rs35538789	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDILT	5,356 Icelandic ancestry individuals	NA	16q12.2		rs35538789-C	0.01715	1E-12		0.0807317	[0.058-0.103] unit increase	Illumina [7506463] (imputed)	N
988	chr16	52884528	52884529	rs117322171	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Black vs. non-black hair color	196 European ancestry black hair individuals, 6,895 European ancestry non-black hair individuals	NA	16q12.2	MC1R	rs117322171-?	0.014	4E-9		452.3873	[450.35-454.43]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
988	chr16	52912298	52912299	rs1344484	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	16q12.2	RPGRIP1L	rs1344484-?	NR	2E-6	(addtive)			Affymetrix [NR]	N
988	chr16	52943972	52943973	rs34348913	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	16q12.2	Intergenic	rs34348913-G	0.632146667	5E-6		0.161539	[0.092-0.231] unit decrease	Illumina [6952813] (imputed)	N
988	chr16	52947629	52947630	rs117145500	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	16q12.2	LOC643714	rs117145500-C	0.063	2E-8	(FAI)	0.276	[NR] unit decrease	Illumina [7879351] (imputed)	N
988	chr16	52949698	52949708	rs1434940296	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs1434940296-G	0.01045	9E-9	(CTNNA1)	0.01416	NR unit increase	Illumina [1671387] (imputed)	N
988	chr16	52949698	52949708	rs1434940296	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs1434940296-G	0.01045	5E-13	(CTNNB1)	0.01783	NR unit increase	Illumina [1671387] (imputed)	N
989	chr16	52969425	52969426	rs10221156	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	16q12.2	CHD9	rs10221156-A	0.0932	1E-10		0.1156	[0.081-0.151] unit decrease	NR [7784415] (imputed)	N
989	chr16	52993177	52993178	rs74685800	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q12.2	CHD9	rs74685800-T	0.0298127229870029	1E-6	(G_Sporobacter_HB)	0.963069	[0.58-1.35] unit decrease	Illumina [7711310] (imputed)	N
989	chr16	53018590	53018591	rs8058777	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	16q12.2	RP11-467J12.2/RP11-467J12.3	rs8058777-?	NR	5E-6		0.124	[0.071-0.177] unit decrease	Illumina [7870334] (imputed)	N
989	chr16	53043994	53043995	rs9302592	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q12.2	NR	rs9302592-?	NR	3E-8				Illumina [7760689] (imputed)	N
989	chr16	53055100	53055101	rs74918996	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	16q12.2		rs74918996-C	0.022	7E-6		33.49	[19.27-47.71] unit decrease	Affymetrix [6939676] (imputed)	N
989	chr16	53055536	53055537	rs79721160	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16q12.2	NR	rs79721160-G	0.9785591	6E-6		1.0638298	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
989	chr16	53073787	53073788	rs10852453	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q12.2	NR	rs10852453-T	0.502934347747748	1E-6	(IGP20)	0.1462	[0.088-0.205] unit decrease	Illumina [~ 2500000] (imputed)	N
990	chr16	53085162	53085163	rs7194847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q12.2		rs7194847-A	0.218051	3E-8		0.0139693	[0.009-0.0189] unit decrease	Illumina [13479295] (imputed)	N
990	chr16	53103233	53103234	rs72797642	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	16q12.2	NR	rs72797642-G	NR	2E-6		1.7643		Affymetrix [8183964] (imputed)	N
990	chr16	53106222	53106223	rs9652625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q12.2	CHD9	rs9652625-C	0.769018	2E-14		0.020860307	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr16	53106222	53106223	rs9652625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q12.2	NR	rs9652625-G	0.231705	8E-22		0.022103	[0.018-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
990	chr16	53122485	53122486	rs11648664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs11648664-A	0.360293	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
990	chr16	53122485	53122486	rs11648664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q12.2	NR	rs11648664-A	0.402087	5E-13		0.014176	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
990	chr16	53136167	53136168	rs55698046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q12.2	CHD9	rs55698046-A	0.405688	4E-9		0.013229775	[0.0088-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
990	chr16	53154360	53154361	rs11075750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q12.2		rs11075750-G	NR	2E-15		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
990	chr16	53158218	53158219	rs56088754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q12.2	CHD9	rs56088754-G	0.305837	3E-13		0.018036801	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
990	chr16	53158218	53158219	rs56088754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q12.2	NR	rs56088754-G	0.305199	4E-19		0.018164	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
990	chr16	53165034	53165035	rs112757932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs112757932-G	0.297107	3E-19				Affymetrix, Illumina [17210439] (imputed)	N
990	chr16	53178249	53178250	rs7186520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.2		rs7186520-?	NR	1E-8				NR [~ 8900000] (imputed)	N
990	chr16	53181246	53181247	rs11859517	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	16q12.2	CHD9	rs11859517-T	0.29	9E-14		0.0074	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
990	chr16	53189671	53189672	rs7203398	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q12.2	CHD9	rs7203398-A	0.7412	6E-17		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
990	chr16	53189671	53189672	rs7203398	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q12.2	CHD9	rs7203398-A	0.7284	2E-16		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
990	chr16	53192330	53192331	rs7204230	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	16q12.2	CHD9	rs7204230-T	0.7	1E-10	(EA)	0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
990	chr16	53213242	53213242	rs398119387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q12.2		rs398119387-AT	NR	8E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
991	chr16	53232140	53232141	rs11075783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q12.2		rs11075783-T	NR	7E-17		0.0152	[0.012-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
991	chr16	53240271	53240273	rs770414535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q12.2	CHD9	rs770414535-G	0.2573	3E-11		0.02827739	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
991	chr16	53240285	53240287	rs201085401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q12.2	CHD9	rs201085401-A	0.280793	2E-13		0.018941475	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
991	chr16	53316853	53316854	rs12598049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q12.2	CHD9	rs12598049-G	0.298933	2E-17		0.02042716	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
991	chr16	53316853	53316854	rs12598049	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		16q12.2	CHD9	rs12598049-?	NR	3E-11		0.0074	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
991	chr16	53342453	53342454	rs6499550	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		16q12.2	CHD9	rs6499550-?	NR	8E-11		0.007	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
991	chr16	53342859	53342860	rs12596466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs12596466-T	0.268108	7E-18				Affymetrix, Illumina [24588908] (imputed)	N
992	chr16	53370020	53370021	rs62049817	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q12.2	RNA5SP427	rs62049817-C	0.2989	2E-9		0.02359055	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
992	chr16	53373195	53373196	rs201355296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q12.2		rs201355296-C	NR	1E-8		0.0273	[0.018-0.037] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
992	chr16	53375225	53375226	rs12598179	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q12.2	CHD9	rs12598179-G	0.707243	1E-8		0.0123769	[0.0081-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
992	chr16	53376458	53376459	rs2080364	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16q12.2	NR	rs2080364-?	NR	2E-6	(EA)	0.2572	[0.15-0.36] unit increase	Illumina [up to 11892802] (imputed)	N
992	chr16	53405715	53405716	rs2041792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q12.2	RP11-44F14.1	rs2041792-C	NR	1E-10		0.0185538	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
992	chr16	53412861	53412862	rs11640533	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q12.2	RP11-44F14.2	rs11640533-T	NR	9E-10		6.13	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
992	chr16	53412861	53412862	rs11640533	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q12.2	RP11-44F14.2	rs11640533-T	NR	3E-11		0.020346703	[0.014-0.026] unit increase	Affymetrix [NR]	N
992	chr16	53424942	53424943	rs1990634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16q12.2	RP11-44F14.8	rs1990634-C	NR	4E-9		0.0188624	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
992	chr16	53424942	53424943	rs1990634	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q12.2	NR	rs1990634-T	NR	2E-11		6.721	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
992	chr16	53428283	53428284	rs2192868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q12.2	RP11-44F14.8	rs2192868-A	NR	2E-9		0.0171531	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
992	chr16	53428283	53428284	rs2192868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q12.2	RP11-44F14.8	rs2192868-A	NR	3E-9		0.0169739	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
992	chr16	53428283	53428284	rs2192868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q12.2	RP11-44F14.8	rs2192868-A	NR	3E-12		0.0199521	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
992	chr16	53429179	53429180	rs62048478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q12.2		rs62048478-?	NR	5E-11				NR [~ 8900000] (imputed)	N
992	chr16	53429774	53429775	rs7203132	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q12.2	NR	rs7203132-A	NR	2E-12		7.064	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
992	chr16	53452067	53452068	rs35487301	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	16q12.2	RBL2	rs35487301-A	0.0249	5E-6		0.179	[0.1-0.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
992	chr16	53452080	53452081	rs1861353	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q12.2	RBL2	rs1861353-A	NR	6E-14		0.022518119	[0.017-0.028] unit decrease	Affymetrix [NR]	N
992	chr16	53455382	53455383	rs7189233	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q12.2	RBL2	rs7189233-T	NR	4E-14		0.025016919	[0.019-0.032] unit increase	Affymetrix [NR]	N
992	chr16	53456390	53456391	rs62048491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q12.2	NR	rs62048491-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
992	chr16	53456660	53456661	rs9932007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q12.2		rs9932007-A	NR	1E-15		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
992	chr16	53456660	53456661	rs9932007	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q12.2	RBL2	rs9932007-G	0.533766	4E-15		0.00174963	[0.0013-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
992	chr16	53476041	53476042	rs72801818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q12.2		rs72801818-T	NR	3E-32		0.0213	[0.018-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
993	chr16	53477732	53477735	rs139253972	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q12.2	RBL2	rs139253972-T	0.312	2E-6		0.0329	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
993	chr16	53481009	53481010	rs17800727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.2		rs17800727-?	NR	1E-55				NR [~ 8900000] (imputed)	N
993	chr16	53491170	53491171	rs72801832	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	16q12.2	NR	rs72801832-T	0.711387	4E-9		1.006	[1.004, 1.008]	Affymetrix [39302896] (imputed)	N
993	chr16	53491170	53491171	rs72801832	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16q12.2		rs72801832-?	NR	2E-12				NR [7857346] (imputed)	N
993	chr16	53494616	53494617	rs2024449	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	16q12.2	RBL2	rs2024449-T	0.5744	5E-7		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
993	chr16	53494616	53494617	rs2024449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16q12.2	RBL2	rs2024449-C	NR	2E-10		0.0197216	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
993	chr16	53494616	53494617	rs2024449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q12.2	RBL2	rs2024449-T	NR	4E-9		5.885	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
993	chr16	53498654	53498655	rs8054299	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q12.2	NR	rs8054299-C	0.304175	2E-16		0.056602977	[0.043-0.07] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
993	chr16	53498654	53498655	rs8054299	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16q12.2	NR	rs8054299-C	0.6861	6E-14		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
993	chr16	53498654	53498655	rs8054299	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16q12.2	NR	rs8054299-C	0.6861	2E-8		0.0107	[0.007-0.0144] unit increase	NR [~ 27400000] (imputed)	N
993	chr16	53498654	53498655	rs8054299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q12.2	Intergenic	rs8054299-C	0.6834	9E-21	(MTAG)	0.023	[0.018-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr16	53498654	53498655	rs8054299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q12.2	Intergenic	rs8054299-C	0.6834	7E-17		0.0256	[0.02-0.032] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
993	chr16	53498654	53498655	rs8054299	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q12.2	NR	rs8054299-C	NR	4E-15		7.86	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
993	chr16	53501945	53501946	rs4281707	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q12.2	FTO	rs4281707-G	0.5442	3E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
993	chr16	53503942	53503943	rs11540358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q12.2	RBL2	rs11540358-G	NR	2E-14		0.0234029	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
993	chr16	53503942	53503943	rs11540358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q12.2	RBL2	rs11540358-G	NR	1E-13		0.0226427	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
993	chr16	53503942	53503943	rs11540358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16q12.2	RBL2	rs11540358-G	NR	6E-18		0.0287043	[0.022-0.035] unit increase	Affymetrix [323123] (imputed)	N
993	chr16	53503942	53503943	rs11540358	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q12.2	NR	rs11540358-G	0.30705	6E-10		0.0467182	[0.032-0.061] unit increase	Affymetrix [17914406] (imputed)	N
993	chr16	53508801	53508802	rs72801843	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q12.2	RBL2	rs72801843-A	0.3015	9E-52		0.0313	[0.027-0.035] unit increase	Affymetrix [18391927] (imputed)	N
993	chr16	53508801	53508802	rs72801843	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q12.2	RBL2	rs72801843-A	NR	3E-12		6.969	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
993	chr16	53509130	53509131	rs7184800	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	16q12.2	NR	rs7184800-?		8E-13		0.0168167	[0.012-0.021] unit increase	Affymetrix [19400418] (imputed)	N
993	chr16	53520612	53520613	rs8057808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q12.2		rs8057808-?	NR	3E-10				NR [~ 8900000] (imputed)	N
993	chr16	53526550	53526551	rs9931702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	16q12.2		rs9931702-?	NR	4E-8				NR [~ 8900000] (imputed)	N
993	chr16	53534623	53534624	rs62048543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q12.2	AKTIP	rs62048543-C	NR	2E-20		0.028299	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
993	chr16	53537422	53537423	rs3743772	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	16q12.2	AKTIP	rs3743772-A	0.07	2E-6		0.64	[0.44-0.84] unit decrease	Illumina [NR] (imputed)	N
993	chr16	53537580	53537581	rs8055642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q12.2	AKTIP, RPGRIP1L	rs8055642-A	0.54	8E-11		6.49	z-score increase	Affymetrix [4311822] (imputed)	N
993	chr16	53538156	53538157	rs3809634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q12.2	Intergenic	rs3809634-A	0.6788	2E-10	(MTAG)	0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr16	53538156	53538157	rs3809634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q12.2	Intergenic	rs3809634-A	0.6787	1E-14	(MTAG)	0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr16	53538156	53538157	rs3809634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.2		rs3809634-A	0.6842	7E-13		0.0109	[0.008-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
993	chr16	53538156	53538157	rs3809634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.2	Intergenic	rs3809634-A	0.6842	2E-17	(MTAG)	0.0121	[0.0094-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr16	53544065	53544066	rs62048548	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q12.2		rs62048548-C	NR	4E-6		4.63836	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
993	chr16	53544065	53544066	rs62048548	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q12.2		rs62048548-C	NR	4E-6		4.63567	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
993	chr16	53544629	53544630	rs17193922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q12.2	AKTIP	rs17193922-G	NR	1E-8		0.0177467	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
993	chr16	53544629	53544630	rs17193922	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q12.2	NR	rs17193922-C	NR	3E-10		6.284	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
993	chr16	53544629	53544630	rs17193922	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	AKTIP	rs17193922-C	0.701	1E-9	(EA)	0.0243	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
993	chr16	53544629	53544630	rs17193922	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	AKTIP	rs17193922-C	0.701	1E-6	(EA, women)	0.0254	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
993	chr16	53552205	53552206	rs17802341	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q12.2	RBL2	rs17802341-?	NR	8E-6	(ureidopropionic acid)	0.2129639	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
993	chr16	53598309	53598310	rs111886096	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		16q12.2	LOC105371270	rs111886096-?	NR	3E-7		0.022	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
993	chr16	53599636	53599637	rs12931642	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs12931642-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
994	chr16	53618502	53618503	rs4783815	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	16q12.2	RPGRIP1L, FTO	rs4783815-A	0.3	7E-9	(left alare-labiale superius distance)	0.089	NR unit decrease	Illumina [7029494] (imputed)	N
994	chr16	53626235	53626236	rs71390213	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs71390213-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
994	chr16	53637887	53637888	rs16952362	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs16952362-?	NR	7E-17				Affymetrix [~ 8270000] (imputed)	N
994	chr16	53637887	53637888	rs16952362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q12.2		rs16952362-?	NR	2E-16				NR [~ 8900000] (imputed)	N
994	chr16	53639437	53639438	rs3213758	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q12.2	NR	rs3213758-C	NR	8E-7		0.026	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
994	chr16	53639437	53639438	rs3213758	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16q12.2	RPGRIP1L	rs3213758-C	0.9432	5E-11		0.0247	[0.017-0.032] unit increase	Illumina [246328]	N
994	chr16	53639437	53639438	rs3213758	23678272	Cheong KA	2013-05-02	J Korean Med Sci	Three new single nucleotide polymorphisms identified by a genome-wide association study in Korean patients with vitiligo.	Vitiligo (non-segmental)	20 Korean ancestry cases, 192 Korean ancestry controls	184 Korean ancestry cases, 192 Korean ancestry controls	16q12.2	KIAA1005	rs3213758-A	.497	6E-11		2.77	[2.04-3.76]	Affymetrix [500568]	N
994	chr16	53643102	53643103	rs9923447	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 9)	3,566 European ancestry individuals	4,680 European ancestry individuals	16q12.2		rs9923447-T	0.223687903	6E-27				Illumina [7417619] (imputed)	N
994	chr16	53646672	53646673	rs55662133	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	16q12.2	RPGRIP1L, FTO	rs55662133-T	0.19	4E-8	(pronasale-labiale superius distance)	0.096	NR unit decrease	Illumina [7029494] (imputed)	N
994	chr16	53662832	53662833	rs78029223	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	16q12.2	RPGRIP1L	rs78029223-C	NR	5E-6	(men)	0.3191702	[0.18-0.46] unit increase	Illumina [5527232] (imputed)	N
994	chr16	53668652	53668653	rs73607972	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		16q12.2	RPGRIP1L	rs73607972-?	NR	2E-7	(EA)	0.026	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
994	chr16	53676013	53676014	rs77582715	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q12.2	RPGRIP1L	rs77582715-T	0.9987	6E-6		1.066	[0.6-1.53] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
994	chr16	53699044	53699045	rs189126230	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs189126230-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
994	chr16	53712134	53712135	rs1477199	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	16q12.2	RPGRIP1L	rs1477199-A	NR	6E-9		0.025	[0.017-0.033] unit decrease	Illumina [2013566] (imputed)	N
994	chr16	53735382	53735383	rs7404301	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	16q12.2	RPGRIP1L, FTO	rs7404301-G	0.28	3E-9	(left alare-labiale superius distance)	0.093	NR unit decrease	Illumina [7029494] (imputed)	N
995	chr16	53757739	53757740	rs1421084	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16q12.2	FTO	rs1421084-A	0.97	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
995	chr16	53758719	53758720	rs78020297	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q12.2	FTO	rs78020297-A	0.0517	7E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
995	chr16	53760088	53760088	rs10680802	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs10680802-CAG	0.711	1E-6		0.0355	[0.021-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53769292	53769293	rs7203521	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs7203521-?	NR	3E-42				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53769676	53769677	rs6499640	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	FTO	rs6499640-A	0.65	6E-14		5.5	[4.07-6.93] percentage SD increase	Illumina [305846]	N
995	chr16	53769676	53769677	rs6499640	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	FTO	rs6499640-A	0.41	4E-13		5.25	[3.82-6.68] % SD increase	Illumina [305846]	N
995	chr16	53781463	53781464	rs4784322	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	16q12.2		rs4784322-?	NR	4E-6		1.30966	[1.19-1.42]	NR [663083]	N
995	chr16	53792463	53792464	rs74498370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs74498370-?	NR	5E-20				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53794468	53794469	rs17525605	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs17525605-?	NR	1E-37				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53797564	53797565	rs4784323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs4784323-?	NR	8E-80				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53797907	53797908	rs7206790	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist circumference	4,658 Korean ancestry females	5,295 Korean ancestry females	16q12.2		rs7206790-G	0.15	4E-7		0.887	[0.54-1.23] unit increase	Affymetrix [NR] (imputed)	N
995	chr16	53797907	53797908	rs7206790	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16q12.2	FTO	rs7206790-G	0.46612301	1E-25		0.616815	[0.56-0.68] unit increase	Affymetrix [9463307] (imputed)	N
995	chr16	53797907	53797908	rs7206790	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	16q12.2	FTO	rs7206790-G	0.46612301	6E-7		0.241182	[0.15-0.34] unit increase	Affymetrix [9463307] (imputed)	N
995	chr16	53797907	53797908	rs7206790	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	16q12.2	FTO	rs7206790-G	0.46612301	2E-6		0.00356595	[0.0021-0.005] unit increase	Affymetrix [9463307] (imputed)	N
995	chr16	53797907	53797908	rs7206790	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	16q12.2	FTO	rs7206790-G	0.184	1E-9		1.1235955	[NR]	Illumina [6603247] (imputed)	N
995	chr16	53798318	53798319	rs28429148	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	16q12.2	FTO	rs28429148-G	0.565413	8E-9		0.013189	[0.0087-0.0177] unit increase	Affymetrix [19400838] (imputed)	N
995	chr16	53798318	53798319	rs28429148	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q12.2	NR	rs28429148-A	0.437903	2E-24		0.0704948	[0.057-0.084] unit increase	Affymetrix [17914406] (imputed)	N
995	chr16	53798318	53798319	rs28429148	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16q12.2	FTO	rs28429148-A	NR	2E-8		0.0211418	[0.013-0.029] unit increase	Affymetrix [16832071] (imputed)	N
995	chr16	53798621	53798622	rs8047587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q12.2		rs8047587-T	NR	7E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
995	chr16	53798621	53798622	rs8047587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q12.2		rs8047587-T	NR	2E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
995	chr16	53798621	53798622	rs8047587	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	16q12.2	NR	rs8047587-T	0.4396	2E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
995	chr16	53798621	53798622	rs8047587	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	16q12.2		rs8047587-T	0.4396	1E-12		0.01757	[0.013-0.022] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
995	chr16	53799269	53799272	rs201940822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	16q12.2		rs201940822-G	NR	3E-10		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
995	chr16	53799277	53799278	rs796856741	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	16q12.2	NR	rs796856741-G	NR	2E-6		0.00788	[0.0047-0.0111] unit decrease	NR [11010159] (imputed)	N
995	chr16	53799277	53799278	rs796856741	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	16q12.2	NR	rs796856741-G	NR	5E-11		0.00696108	[0.0049-0.009] unit decrease	NR [11010159] (imputed)	N
995	chr16	53799278	53799279	rs57292959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q12.2		rs57292959-T	NR	2E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
995	chr16	53799278	53799279	rs57292959	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs57292959-?	NR	9E-13		0.0147039	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
995	chr16	53799278	53799279	rs57292959	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	16q12.2	FTO	rs57292959-T	NR	4E-7	(dominance deviation model)	0.03	[0.018-0.042] unit decrease	NR [9288881] (imputed)	N
995	chr16	53799278	53799278	rs199952722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q12.2		rs199952722-GT	NR	1E-17		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
995	chr16	53799506	53799507	rs9937053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	16q12.2		rs9937053-A	NR	5E-9		0.0322	[0.021-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53799506	53799507	rs9937053	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or heart failure (MTAG)	89,297 European ancestry individuals with body fat percentage, 47,309 European ancestry cases with heart failure, 930,014 European ancestry controls without heart failure, 11,419 Korean ancestry, Indian Asian ancestry, Jamaican ancestry individuals with body fat percentage	NA	16q12.2		rs9937053-?	NR	1E-18		0.0438	[0.028-0.059] unit increase	NR [NR] (imputed)	N
995	chr16	53799506	53799507	rs9937053	33243845	Strausz S	2020-11-26	Eur Respir J	Genetic analysis of obstructive sleep apnoea discovers a strong association with cardiometabolic health.	Obstructive sleep apnea	16,761 Finnish ancestry cases, 201,194 Finnish ancestry controls	10,348 European or unknown ancestry cases, 474,608 European or unknown ancestry controls	16q12.2	FTO	rs9937053-A	0.43	3E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53799506	53799507	rs9937053	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	16q12.2	FTO	rs9937053-A	0.424	2E-21		0.0142	[0.011-0.017] unit increase	Affymetrix [~ 7740000] (imputed)	N
995	chr16	53799506	53799507	rs9937053	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q12.2	NA	rs9937053-A	0.4372	1E-423		0.0721	[0.069-0.075] unit increase	NR [~ 27400000] (imputed)	N
995	chr16	53799904	53799905	rs9928094	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	16q12.2	FTO	rs9928094-G	0.413164	6E-101		1.32	[1.29-1.36]	Illumina [~ 41266535] (imputed)	N
995	chr16	53799904	53799905	rs9928094	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	16q12.2	FTO	rs9928094-A	0.7564	4E-7	(Asian)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53799904	53799905	rs9928094	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	16q12.2	FTO	rs9928094-A	0.63	3E-15	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53799976	53799977	rs9930333	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	16q12.2	FTO	rs9930333-G	0.374575	9E-76		1.48	[1.42-1.54]	Illumina [41266535] (imputed)	N
995	chr16	53799976	53799977	rs9930333	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	16q12.2	NR	rs9930333-G	0.42	2E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs9930333-G	0.43479999999999996	2E-71	(EA)	0.0762	[0.068-0.085] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs9930333-G	0.4345	5E-72		0.0747	[0.066-0.083] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs9930333-G	0.4327	9E-44	(women)	0.074	[0.064-0.084] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs9930333-G	0.4327	2E-43	(EA,women)	0.0763	[0.066-0.087] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs9930333-?	NR	2E-68	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs9930333-?	NR	1E-68	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs9930333-G	0.43479999999999996	2E-64	(EA, women)	0.0847	[0.075-0.095] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs9930333-G	0.43479999999999996	1E-103	(EA)	0.0835	[0.076-0.091] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs9930333-G	0.4345	2E-64	(women)	0.0819	[0.072-0.091] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53799976	53799977	rs9930333	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	16q12.2	FTO	rs9930333-T	0.551	8E-8	(Trans-ethnic initial)	0.0208	[0.014-0.028] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
995	chr16	53800199	53800200	rs9940278	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	16q12.2		rs9940278-T	0.4348	1E-18		1.055168	[1.042627761-1.067859076]	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53800240	53800241	rs575095274	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q12.2	FTO	rs575095274-A	0.0025	6E-6		0.4078	[0.23-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53800240	53800241	rs575095274	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs575095274-A	0.0025	1E-6		0.44	[0.26-0.62] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53800567	53800568	rs9939973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	16q12.2		rs9939973-A	0.235858	2E-10		0.0313284	[0.022-0.041] unit increase	Illumina [13466143] (imputed)	N
995	chr16	53800567	53800568	rs9939973	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs9939973-A	0.4337	4E-43	(EA, men)	0.0677	[0.058-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53800567	53800568	rs9939973	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs9939973-A	0.4337	3E-52	(EA,women)	0.0716	[0.062-0.081] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53800567	53800568	rs9939973	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs9939973-A	0.4337	2E-86	(EA)	0.07	[0.063-0.077] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53800753	53800754	rs9940128	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs9940128-?	NR	9E-16		0.05303515	[0.04-0.066] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53800753	53800754	rs9940128	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16q12.2	NR	rs9940128-A	0.4354	6E-112		0.0386	[0.035-0.042] unit increase	NR [~ 27400000] (imputed)	N
995	chr16	53800753	53800754	rs9940128	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	16q12.2	FTO	rs9940128-A	0.44	4E-23		0.083	[0.067-0.099] unit increase	Affymetrix, Illumina [557887] (imputed)	N
995	chr16	53800753	53800754	rs9940128	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	16q12.2	FTO	rs9940128-A	0.42	2E-9	(Waist)	0.09	[NR] cm increase	Illumina [1257079] (imputed)	N
995	chr16	53800953	53800954	rs1421085	34836030	Park S	2021-10-25	Nutrients	Interactions between Polygenic Risk Scores, Dietary Pattern, and Menarche Age with the Obesity Risk in a Large Hospital-Based Cohort.	Obesity	17,545 Korean ancestry cases, 36,283 Korean ancestry controls	2,756 East Asian ancestry cases, 5,395 East Asian ancestry controls	16q12.2		rs1421085-C	0.125	2E-16		1.18	[1.13-1.22]	Affymetrix [NR]	N
995	chr16	53800953	53800954	rs1421085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q12.2		rs1421085-C	NR	3E-241		0.0591	[0.056-0.063] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
995	chr16	53800953	53800954	rs1421085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q12.2		rs1421085-C	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
995	chr16	53800953	53800954	rs1421085	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Abdominal subcutaneous adipose tissue volume	32,860 European ancestry individuals	NA	16q12.2	RPGRIP1L	rs1421085-?	NR	2E-21		0.0698	NR L increase	Affymetrix [9390170] (imputed)	N
995	chr16	53800953	53800954	rs1421085	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	16q12.2	NR	rs1421085-?	NR	6E-21		12.975	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
995	chr16	53800953	53800954	rs1421085	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	16q12.2	FTO	rs1421085-T	0.578326	1E-9		0.023528	[0.016-0.031] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	16q12.2	FTO	rs1421085-T	0.578326	4E-13		0.018411	[0.013-0.023] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	16q12.2		rs1421085-C	0.39	1E-9		1.11	[1.07-1.15]	Illumina [11796347] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32970232	Zhang YX	2020-09-24	Mol Genet Genomics	Three pleiotropic loci associated with bone mineral density and lean body mass.	Leg lean mass	9,618 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	up to 500,000 European ancestry individuals	16q12.2	NR	rs1421085-T	0.59	1E-338		0.078	[0.074-0.082] unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32970232	Zhang YX	2020-09-24	Mol Genet Genomics	Three pleiotropic loci associated with bone mineral density and lean body mass.	Bone mineral density or leg lean mass (pleiotropy)	9,618 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	up to 500,000 European ancestry individuals	16q12.2	NR	rs1421085-T	0.59	6E-14				Affymetrix, Illumina [12061510] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	16q12.2	NR	rs1421085-C	0.2018	1E-28		0.1211	[0.1-0.142] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q12.2	NR	rs1421085-C	0.4142	6E-144		0.1177	[0.11-0.13] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q12.2	NR	rs1421085-C	0.367	1E-189		0.1182	[0.11-0.13] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16q12.2	FTO	rs1421085-C	0.167	2E-48		1.14	[1.12-1.16]	Affymetrix, Illumina [11800000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16q12.2	NR	rs1421085-C	0.4067	6E-14		0.015630115	[0.012-0.02] unit decrease	Affymetrix [10613246] (imputed)	N
995	chr16	53800953	53800954	rs1421085	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative fat intake	175,253 European ancestry individuals	93,179 European ancestry individuals	16q12.2	NR	rs1421085-?		7E-12		0.019	[0.013-0.025] unit decrease	Affymetrix [NR]	N
995	chr16	53800953	53800954	rs1421085	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q12.2	FTO	rs1421085-T	0.596552	6E-242		0.0474156	[0.045-0.05] unit decrease	Affymetrix [12370749]	N
995	chr16	53800953	53800954	rs1421085	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q12.2	NR	rs1421085-T	0.594668	1E-11		0.0215477	[0.015-0.028] unit increase	Affymetrix [16577313] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31840077	Couto Alves A	2019-09-04	Sci Adv	GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI.	Age at adiposity rebound	6,051 European ancestry children	12,256 European ancestry children	16q12.2	FTO	rs1421085-C	0.25	3E-30		0.12	[0.1-0.14] unit decrease	Affymetrix, Illumina [up to 2543888] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	3E-52				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	3E-166				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	2E-48				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	2E-152				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate variance	341,584 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	9E-47				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate	341,584 European ancestry individuals	NA	16q12.2	FTO	rs1421085-?	NR	9E-154				NR [5554549] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16q12.2	FTO	rs1421085-T	0.6	9E-13		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs1421085-?	NR	7E-29		0.08899796	[0.073-0.105] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53800953	53800954	rs1421085	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q12.2	FTO	rs1421085-C	0.403509	5E-15		0.04465531	[0.033-0.056] unit increase	Affymetrix [7288503] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	16q12.2	FTO	rs1421085-T	0.67	2E-11		6.69	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q12.2		rs1421085-T	0.5961	1E-25		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	16q12.2	FTO	rs1421085-C	0.2	1E-28		1.13	1.11-1.15	Illumina [12557761] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q12.2	FTO	rs1421085-C	0.4065	5E-32		1.0432968		Affymetrix [11880941] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q12.2	FTO	rs1421085-C	0.4065	5E-32		1.0427902		Affymetrix [11880941] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	16q12.2		rs1421085-?	NR	4E-29				NR [~ 8900000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	16q12.2		rs1421085-?	NR	8E-21				NR [~ 8900000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q12.2		rs1421085-?	NR	1E-300				NR [~ 8900000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	4E-62		0.37353	[0.33-0.42] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	2E-26	(female)	0.26138	[0.21-0.31] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	1E-38	(male)	0.46248	[0.39-0.53] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	5E-21	(female)	0.32912	[0.26-0.4] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	3E-50		0.3207	[0.28-0.36] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q12.2	NR	rs1421085-?	NR	2E-32	(male)	0.31384	[0.26-0.37] unit increase	Affymetrix [7794483] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	16q12.2	NR	rs1421085-T	0.7995	2E-10	(East Asian)	0.3552	[0.25-0.46] unit decrease	Illumina [6200000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q12.2	FTO	rs1421085-C	0.415	3E-84		1.13	[1.12-1.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	29988085	Merino J	2018-07-09	Mol Psychiatry	Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium.	Dietary macronutrient intake	91,114 European ancestry individuals	177,315 European ancestry individuals	16q12.2	FTO	rs1421085-C	0.4	1E-16	(Protein)	0.079	[0.059-0.099] % increase	Affymetrix, Illumina [1180000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	16q12.2	FTO	rs1421085-C	0.4	5E-38		0.004	[0.0034-0.0046] unit decrease	Affymetrix [15275733] (imputed)	N
995	chr16	53800953	53800954	rs1421085	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	16q12.2	FTO	rs1421085-A		9E-44		0.0135	[0.012-0.015] unit decrease	Illumina [at least 200000]	N
995	chr16	53800953	53800954	rs1421085	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	16q12.2	FTO	rs1421085-C	NR	2E-75	(additive model)	0.076	[0.068-0.084] unit increase	NR [9288881] (imputed)	N
995	chr16	53800953	53800954	rs1421085	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	16q12.2	FTO	rs1421085-C	NR	4E-15	(Japanese)	1.1618342	[1.1191628661761-1.20613294479771]	Illumina [7521072] (imputed)	N
995	chr16	53800953	53800954	rs1421085	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	16q12.2	FTO	rs1421085-C	0.41	5E-16		0.059	[0.045-0.073] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
995	chr16	53800953	53800954	rs1421085	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	41,257 European ancestry individuals	16q12.2	FTO	rs1421085-C	0.42	1E-9	(Protein)	0.1	[0.061-0.139] % increase	Affymetrix, Illumina [2500000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	16q12.2	FTO	rs1421085-C	0.41	3E-28		1.44	[1.35-1.54]	Affymetrix [~ 2000000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16q12.2	FTO	rs1421085-C	0.41	6E-39	(Obesity class III)	1.45	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
995	chr16	53800953	53800954	rs1421085	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q12.2	FTO	rs1421085-C	0.41	5E-13	(adults)	1.25	[1.10-1.40]	Illumina [308846]	N
995	chr16	53800953	53800954	rs1421085	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q12.2	FTO	rs1421085-C	0.4	7E-18	(children)	1.39	[1.27-1.51]	Illumina [308846]	N
995	chr16	53800953	53800954	rs1421085	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q12.2	FTO	rs1421085-C	0.4	1E-28				Illumina [308846]	N
995	chr16	53801115	53801116	rs111240785	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs111240785-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53801984	53801985	rs9923544	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q12.2	NA	rs9923544-T	0.4354	1E-113		0.0389	[0.036-0.042] unit increase	NR [~ 27400000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q12.2		rs11642015-T	0.198682717	6E-27		0.121951394	[0.1-0.144] unit increase	Illumina [13429769] (imputed)	N
995	chr16	53802493	53802494	rs11642015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q12.2		rs11642015-T	NR	9E-290		0.074	[0.07-0.078] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
995	chr16	53802493	53802494	rs11642015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	16q12.2		rs11642015-T	0.203407	2E-85		0.0773912	[0.07-0.085] unit increase	Illumina [13479178] (imputed)	N
995	chr16	53802493	53802494	rs11642015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	16q12.2		rs11642015-T	0.203526	6E-16		0.0337251	[0.026-0.042] unit increase	Illumina [13478792] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	3E-20		0.018	nmol/L decrease	NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	2E-157				NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	4E-16		0.014	mmol/L decrease	NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	7E-165		0.041	% increase	NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	7E-7		0.01	U/L increase	NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	16q12.2		rs11642015-T	0.4	8E-20		0.018	U/L increase	NR [NR] (imputed)	N
995	chr16	53802493	53802494	rs11642015	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	16q12.2		rs11642015-T	0.199307382	1E-35		1.1362573	[1.113644322-1.159329518]	Illumina [8919992] (imputed)	N
995	chr16	53802493	53802494	rs11642015	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	16q12.2	FTO	rs11642015-?	NR	2E-73				NR [5554549] (imputed)	N
995	chr16	53802493	53802494	rs11642015	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	16q12.2	FTO	rs11642015-?	NR	7E-217				NR [5554549] (imputed)	N
995	chr16	53802493	53802494	rs11642015	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	16q12.2	FTO	rs11642015-C	0.596261	7E-23	(EA)	0.0124196	[0.0099-0.0149] unit decrease	Affymetrix [~ 8800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	16q12.2	NR	rs11642015-T	0.4041	6E-11		0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16q12.2		rs11642015-?	NR	1E-57				NR [~ 8900000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	16q12.2	NR	rs11642015-T	0.2054	2E-12	(East Asian)	0.5779	[0.42-0.74] unit increase	Illumina [6200000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	16q12.2	NR	rs11642015-T	0.1951	3E-10	(East Asian)	0.3531	[0.24-0.46] unit increase	Illumina [6200000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	16q12.2	NR	rs11642015-T	0.2054	1E-9	(East Asian)	0.3503	[0.24-0.46] unit increase	Illumina [6200000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	16q12.2	NR	rs11642015-T	0.1951	3E-6	(East Asian)	0.2406	[0.14-0.34] unit increase	Illumina [6200000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16q12.2	FTO	rs11642015-T	0.4023	8E-49		0.004	[0.0034-0.0046] unit decrease	Affymetrix [15275733] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	4E-20				Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	1E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	1E-20				Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?		6E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	4E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	2E-10				Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	6E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q12.2	AKTIP, RPGRIP1L, FTO	rs11642015-?	NR	3E-11				Affymetrix, Illumina [18800000] (imputed)	N
995	chr16	53802493	53802494	rs11642015	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	16q12.2	FTO	rs11642015-?	NR	4E-15		0.03452	[0.026-0.043] unit increase novel	Illumina [6108953] (imputed)	N
995	chr16	53802493	53802494	rs11642015	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q12.2	FTO	rs11642015-T	0.207	2E-81	(Japanese)	0.081	[0.073-0.089] unit increase	Illumina [6108953] (imputed)	N
995	chr16	53803222	53803223	rs62048402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16q12.2		rs62048402-A	NR	3E-21		0.0647	[0.051-0.078] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53803222	53803223	rs62048402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16q12.2		rs62048402-A	0.203684597	2E-9		0.07835509	[0.053-0.104] unit increase	Illumina [13134967] (imputed)	N
995	chr16	53803222	53803223	rs62048402	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.2	NR	rs62048402-A	0.4156	4E-23	(EA)	0.0624	[0.05-0.075] unit decrease	Illumina [~ 11800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	16q12.2		rs1558902-A	NR	1E-9		0.0528	[0.036-0.07] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
995	chr16	53803573	53803574	rs1558902	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Visceral adipose tissue volume	32,860 European ancestry individuals	NA	16q12.2	RPGRIP1L	rs1558902-?	NR	3E-8		0.0374	NR L increase	Affymetrix [9390170] (imputed)	N
995	chr16	53803573	53803574	rs1558902	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	circulating leptin levels	21,758 European ancestry individuals	9,173 individuals	16q12.2		rs1558902-A	0.42	2E-14		0.0618	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16q12.2	NR	rs1558902-A	0.4	4E-12		0.012179407	[0.0087-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
995	chr16	53803573	53803574	rs1558902	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16q12.2		rs1558902-?	NR	2E-8		0.0115207	[0.0075-0.0156] unit increase	NR [6912294] (imputed)	N
995	chr16	53803573	53803574	rs1558902	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	16q12.2	FTO	rs1558902-A	0.3846	5E-7		0.5625	[0.34-0.78] unit increase	Illumina [500508]	N
995	chr16	53803573	53803574	rs1558902	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals	NA	16q12.2	FTO	rs1558902-A	0.3846	2E-7		0.6007	[0.38-0.83] unit increase	Illumina [500508]	N
995	chr16	53803573	53803574	rs1558902	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs1558902-?	NR	4E-29		0.08936667	[0.074-0.105] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53803573	53803574	rs1558902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q12.2		rs1558902-?	NR	7E-25				NR [~ 8900000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	16q12.2	FTO	rs1558902-A	0.41	5E-20		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
995	chr16	53803573	53803574	rs1558902	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q12.2	NR	rs1558902-T	NR	2E-210		0.079	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	16q12.2	FTO	rs1558902-A	0.4128	3E-8		0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q12.2	FTO	rs1558902-A	0.44	2E-223		0.081	[0.075-0.087] unit increase	Illumina [6108953] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.4057	2E-29		0.0712	[0.059-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.4051	7E-27		0.0711	[0.058-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.4051	7E-27		0.0711	[0.058-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.4034	8E-20		0.0718	[0.056-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.4056	4E-40		0.0842	[0.072-0.097] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	2E-63	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	2E-62	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	2E-115				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	9E-21	(men)	0.0948	[0.075-0.115] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	8E-39		0.0936	[0.079-0.108] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	4E-22	(women)	0.0938	[0.075-0.113] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	4E-44	(women)	0.0685	[0.059-0.078] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	3E-45	(men)	0.0771	[0.066-0.088] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	1E-79		0.072	[0.065-0.079] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	7E-65	(men)	0.0806	[0.071-0.09] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	5E-59	(women)	0.0707	[0.062-0.079] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q12.2	FTO	rs1558902-A	0.4028	3E-110		0.075	[0.068-0.082] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	16q12.2	FTO	rs1558902-A	NR	5E-9				NR [2501543] (imputed)	N
995	chr16	53803573	53803574	rs1558902	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	16q12.2	FTO	rs1558902-?	NR	1E-12		0.031	[0.023-0.040] unit increase	Illumina [12039492]	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.41	2E-13	(European men)	0.051	[0.037-0.065] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.41	1E-25	(European)	0.051	[0.041-0.061] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.41	1E-13	(European women)	0.051	[0.037-0.065] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.4	7E-14	(women)	0.05	[0.037-0.063] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.4	4E-27		0.051	[0.041-0.061] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	16q12.2	FTO	rs1558902-A	0.4	4E-15	(men)	0.051	[0.038-0.064] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	16q12.2	NR	rs1558902-A	NR	4E-14				Affymetrix, Illumina [2499691] (imputed)	N
995	chr16	53803573	53803574	rs1558902	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16q12.2	NR	rs1558902-A	0.415284232669989	9E-199		0.08215689	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index (age interaction)	9,377 children and adolescents	3,918 European ancestry children and adolescents	16q12.2	FTO	rs1558902-A	0.402	1E-26				Illumina [~ 2200000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	16q12.2	FTO	rs1558902-A	0.402	2E-16	(age 8)	0.012	[0.0081-0.0159] unit increase	Illumina [~ 2200000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	16q12.2	FTO	rs1558902-A	0.402	1E-26	(age 1-17)			Illumina [~ 2200000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.2	FTO	rs1558902-A	0.418	1E-93	(EA, men)	0.084	[0.076-0.092] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr16	53803573	53803574	rs1558902	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.2	FTO	rs1558902-A	0.415	8E-153	(EA)	0.082	[0.076-0.088] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr16	53803573	53803574	rs1558902	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.2	FTO	rs1558902-A	0.413	4E-84	(EA, women)	0.079	[0.071-0.087] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr16	53803573	53803574	rs1558902	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q12.2	FTO	rs1558902-A	0.409	1E-156		0.081	[0.075-0.087] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr16	53803573	53803574	rs1558902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1558902-A	0.4151	8E-59	(EA, men)	0.0767	[0.067-0.086] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1558902-A	0.4151	4E-101	(EA)	0.0739	[0.067-0.081] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1558902-A	0.4151	1E-57	(EA, women)	0.0714	[0.063-0.08] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53803573	53803574	rs1558902	25044758	Stergiakouli E	2014-07-21	Obesity (Silver Spring)	Genome-wide association study of height-adjusted BMI in childhood identifies functional variant in ADCY3.	Height adjusted BMI	5,809 children	2,089 European ancestry children	16q12.2	FTO	rs1558902-A	0.40	9E-10		0.21	[0.13-0.27] unit increase	Illumina [2608006] (imputed)	N
995	chr16	53803573	53803574	rs1558902	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	16q12.2	FTO	rs1558902-A	0.15	7E-27		0.0756	[0.062-0.089] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16q12.2	FTO	rs1558902-A	0.41	2E-81	(Overweight)	1.14	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	21544081	Dorajoo R	2011-04-19	Int J Obes (Lond)	Replication of 13 obesity loci among Singaporean Chinese, Malay and Asian-Indian populations.	Obesity	5,429 Chinese ancestry individuals, 2,431 Malay ancestry individuals, 2,531 Asian Indian ancestry individuals	NA	16q12.2	FTO	rs1558902-T	NR	1E-7		0.09	[0.06-0.12] unit decrease	Illumina [1283957] (imputed)	N
995	chr16	53803573	53803574	rs1558902	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	16q12.2	FTO	rs1558902-A	0.42	5E-120		0.39	[0.35-0.43] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
995	chr16	53803573	53803574	rs1558902	20421936	Scherag A	2010-04-22	PLoS Genet	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	16q12.2	FTO	rs1558902-A	NR	5E-19		1.37	[1.26-1.50]	Affymetrix, Illumina [1596878] (imputed)	N
995	chr16	53803573	53803574	rs1558902	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	16q12.2	FTO	rs1558902-?	NR	5E-19				Affymetrix, Illumina [up to 512349]	N
995	chr16	53804964	53804965	rs10852521	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	16q12.2	NR	rs10852521-A	NR	4E-6		0.009402	[0.0054-0.0134] unit increase	Illumina [~ 540852]	N
995	chr16	53805206	53805207	rs11075985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sleep apnea syndrome	13,818 European ancestry cases, 463,035 European ancestry controls, 473 East Asian ancestry cases, 177,864 East Asian ancestry controls	NA	16q12.2		rs11075985-A	NR	2E-15		0.1036	[0.078-0.129] unit increase	Affymetrix, Illumina [25843213] (imputed)	N
995	chr16	53805206	53805207	rs11075985	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q12.2	FTO	rs11075985-C	0.575568	2E-14		0.0146221	[0.011-0.018] unit increase	Affymetrix [NR] (imputed)	N
995	chr16	53805206	53805207	rs11075985	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16q12.2	NR	rs11075985-A	0.4384	7E-112		0.0386	[0.035-0.042] unit increase	NR [~ 27400000] (imputed)	N
995	chr16	53805343	53805344	rs11075986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs11075986-C	0.9207	8E-6		0.0567	[0.032-0.082] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53805525	53805526	rs147870440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs147870440-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53806452	53806453	rs56094641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q12.2		rs56094641-G	NR	2E-64		0.1166	[0.1-0.13] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
995	chr16	53806452	53806453	rs56094641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q12.2		rs56094641-G	0.203341669	6E-18		0.10510358	[0.081-0.129] unit increase	Illumina [13134967] (imputed)	N
995	chr16	53806452	53806453	rs56094641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q12.2		rs56094641-G	NR	1E-39		0.1117	[0.095-0.128] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53806452	53806453	rs56094641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	16q12.2		rs56094641-G	NR	2E-16		0.0524	[0.04-0.065] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53806452	53806453	rs56094641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	16q12.2		rs56094641-G	NR	2E-11		0.0477	[0.034-0.062] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53806452	53806453	rs56094641	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q12.2	FTO	rs56094641-A	0.595528	2E-18		0.00350445	[0.0027-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
995	chr16	53806452	53806453	rs56094641	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	8,732 European American and African American ancestry men	NA	16q12.2	NR	rs56094641-?	NR	2E-6		0.1956	NR unit decrease	Affymetrix, Illumina [7784259] (imputed)	N
995	chr16	53806452	53806453	rs56094641	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	13,625 European ancestry individuals, 1,465 African American individuals	NA	16q12.2	NR	rs56094641-?	NR	1E-9		0.2043	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
995	chr16	53806452	53806453	rs56094641	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	16q12.2	FTO	rs56094641-G	0.4	2E-9		5.96	z-score increase	Affymetrix [4312306] (imputed)	N
995	chr16	53806452	53806453	rs56094641	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q12.2	FTO	rs56094641-A	0.595371	4E-243		0.0465215	[0.044-0.049] unit decrease	Affymetrix [12370749]	N
995	chr16	53806452	53806453	rs56094641	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	16q12.2	FTO	rs56094641-?	NR	6E-11	(female)	0.0219999	[0.015-0.029] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53806452	53806453	rs56094641	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	16q12.2	FTO	rs56094641-?	NR	1E-19		0.0223354	[0.018-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31919418	Shah S	2020-01-09	Nat Commun	Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure.	Heart failure	47,309 European ancestry cases, 930,014 European ancestry controls	NA	16q12.2	FTO	rs56094641-G	0.42	1E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [8246881] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q12.2	NR	rs56094641-A	0.596612	2E-26		0.0224507	[0.018-0.027] unit decrease	NR [NR]	N
995	chr16	53806452	53806453	rs56094641	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16q12.2	FTO	rs56094641-G	0.402905	1E-28		0.0736765	[0.061-0.087] unit increase	Affymetrix [9463307] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	16q12.2	NR	rs56094641-A	NR	6E-25	(EA)	0.2024	[0.16-0.24] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16q12.2	NR	rs56094641-G	0.4036	4E-145		0.06469318	[0.06-0.07] unit increase	Affymetrix [10549349] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	16q12.2	FTO	rs56094641-G	0.404982	2E-23		0.117936656	[0.095-0.141] unit increase	Affymetrix [7288503] (imputed)	N
995	chr16	53806452	53806453	rs56094641	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16q12.2	FTO	rs56094641-G	0.40302	7E-14		0.059995115	[0.044-0.076] unit increase	Affymetrix [7288503] (imputed)	N
995	chr16	53806452	53806453	rs56094641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q12.2		rs56094641-?	NR	2E-11				NR [~ 8900000] (imputed)	N
995	chr16	53806452	53806453	rs56094641	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	16q12.2	FTO	rs56094641-G	NR	2E-9		1.18	[1.12-1.24]	Illumina [NR]	N
995	chr16	53806452	53806453	rs56094641	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	16q12.2	FTO	rs56094641-?	NR	8E-10		1.21	[1.14-1.29]	Illumina [5768242] (imputed)	N
995	chr16	53807004	53807005	rs63031764	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs63031764-A	0.9787	8E-6		0.1387	[0.078-0.199] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53807497	53807498	rs16952522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs16952522-?	NR	8E-22				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53807763	53807764	rs17817288	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	16q12.2	FTO	rs17817288-A	NR	9E-9		1.04		Affymetrix [14661600] (imputed)	N
995	chr16	53809122	53809123	rs55872725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16q12.2		rs55872725-T	0.20346	1E-63		0.056575	[0.05-0.063] unit increase	Illumina [13479924] (imputed)	N
995	chr16	53809122	53809123	rs55872725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q12.2		rs55872725-T	NR	1E-29		0.0595	[0.049-0.07] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53809122	53809123	rs55872725	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q12.2	FTO	rs55872725-T	0.4038	1E-32		0.0222	[0.018-0.026] unit increase	Affymetrix [18391927] (imputed)	N
995	chr16	53809122	53809123	rs55872725	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	16q12.2	FTO	rs55872725-?	NR	1E-11		0.016866	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53809122	53809123	rs55872725	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	16q12.2	FTO	rs55872725-C	0.599	1E-7		5.305	NR z score increase	Affymetrix [11141077] (imputed)	N
995	chr16	53809122	53809123	rs55872725	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sweet beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	16q12.2	FTO	rs55872725-C	0.5919	3E-6		0.0085	[0.005-0.012] unit increase	Affymetrix [~ 7740000] (imputed)	N
995	chr16	53809122	53809123	rs55872725	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Sugar-sweetened beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	16q12.2	FTO	rs55872725-C	0.5913	2E-15		0.0095	[0.0071-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
995	chr16	53809122	53809123	rs55872725	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16q12.2	FTO	rs55872725-T	0.402662	8E-22		0.05885148	[0.047-0.071] unit increase	Affymetrix [7288503] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	6E-8	(males)	0.02094	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	1E-9		0.01312	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	4E-7	(females)	0.02017	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	7E-103		0.05017	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	5E-65	(males)	0.03568	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q12.2	FTO	rs55872725-T	0.394501	3E-83	(females)	0.06203	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
995	chr16	53809122	53809123	rs55872725	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	16q12.2	FTO	rs55872725-T	0.41	2E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53809122	53809123	rs55872725	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	16q12.2	FTO	rs55872725-?	0.4	3E-13	(model 3)	1.0416667		Affymetrix [11800000] (imputed)	N
995	chr16	53809122	53809123	rs55872725	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body mass index	19,900 British ancestry individuals from 6863 families.	NA	16q12.2	FTO	rs55872725-T	0.3951	6E-21		0.10437275	[0.083-0.126] kg/m2 increase	Illumina [24111857] (imputed)	N
995	chr16	53809122	53809123	rs55872725	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	16q12.2	FTO	rs55872725-T	0.3951	6E-16		0.6429834	[0.49-0.80] % increase	Illumina [24111857] (imputed)	N
995	chr16	53809246	53809247	rs1121980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q12.2		rs1121980-A	NR	1E-28		0.0233	[0.019-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		16q12.2	FTO	rs1121980-A	0.424	9E-16		0.05	[0.038-0.062] unit increase	Illumina [232255]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		16q12.2	FTO	rs1121980-A	0.424	1E-10		0.071	[0.049-0.093] unit increase	Illumina [92082]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		16q12.2	FTO	rs1121980-A	0.432	8E-17		0.055	[0.041-0.069] unit increase	Illumina [204641]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		16q12.2	FTO	rs1121980-A	0.432	3E-11		0.078	[0.054-0.102] unit increase	Illumina [54083]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		16q12.2	FTO	rs1121980-A	0.431	6E-7		0.044	[0.026-0.062] unit increase	Illumina [193201]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	23,861 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		16q12.2	FTO	rs1121980-A	0.433	9E-8		0.096	[0.063-0.129] unit increase	Illumina [60771]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	23,861 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		16q12.2	FTO	rs1121980-A	0.433	1E-15		0.075	[0.057-0.093] unit increase	Illumina [220735]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	21,921 European ancestry men		16q12.2	FTO	rs1121980-A	0.433	8E-9		0.1	[0.067-0.133] unit increase	Illumina [46904]	N
995	chr16	53809246	53809247	rs1121980	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	21,921 European ancestry men		16q12.2	FTO	rs1121980-A	0.433	2E-15		0.077	[0.057-0.097] unit increase	Illumina [185219]	N
995	chr16	53809246	53809247	rs1121980	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	16q12.2		rs1121980-G	NR	3E-11		0.021706386	[0.015-0.028] years increase	NR [7400000] (imputed)	N
995	chr16	53809246	53809247	rs1121980	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	16q12.2	NR	rs1121980-A	0.422905	1E-14		0.074529	[0.055-0.094] unit increase	Affymetrix [21375087] (imputed)	N
995	chr16	53809246	53809247	rs1121980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs1121980-?	NR	1E-15		0.05246513	[0.04-0.065] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53809246	53809247	rs1121980	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q12.2	NA	rs1121980-A	0.4378	1E-206		0.072	[0.069-0.075] unit increase	NR [~ 27400000] (imputed)	N
995	chr16	53809246	53809247	rs1121980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q12.2	NR	rs1121980-G	NR	2E-6		0.016	unit decrease	Affymetrix [at least 7091467] (imputed)	N
995	chr16	53809246	53809247	rs1121980	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q12.2	FTO	rs1121980-A	0.447	2E-7	(Trans-ethnic initial)	0.0196	[0.013-0.026] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
995	chr16	53809246	53809247	rs1121980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1121980-A	0.4328	1E-38	(EA)	0.0432	[0.037-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53809246	53809247	rs1121980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1121980-A	0.4328	1E-23	(EA, men)	0.0484	[0.039-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53809246	53809247	rs1121980	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q12.2	FTO	rs1121980-A	0.4328	1E-17	(EA, women)	0.0384	[0.03-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
995	chr16	53809246	53809247	rs1121980	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16q12.2	FTO	rs1121980-A	0.43	3E-8		0.021	[NR] mg/dL increase	NR [NR] (imputed)	N
995	chr16	53809246	53809247	rs1121980	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q12.2	FTO	rs1121980-A	0.43	7E-9		0.02	[NR] unit decrease	NR [NR] (imputed)	N
995	chr16	53809246	53809247	rs1121980	18454148	Loos RJ	2008-05-04	Nat Genet	Common variants near MC4R are associated with fat mass, weight and risk of obesity.	Body mass index	16,876 European ancestry adult individuals	60,352 European ancestry adult individuals, 5,988 European ancestry children	16q12.2	FTO	rs1121980-?	NR	4E-8		0.06	[0.04-0.08] unit increase	Affymetrix [344883]	N
995	chr16	53809246	53809247	rs1121980	18159244	Hinney A	2007-12-26	PLoS One	Genome wide association (GWA) study for early onset extreme obesity supports the role of fat mass and obesity associated gene (FTO) variants.	Obesity (early onset extreme)	487 European ancestry cases, 442 European ancestry controls	2,269 European ancestry individuals from 644 families	16q12.2	FTO	rs1121980-T	0.41	1E-7		1.66	[1.37-2.01]	Affymetrix [440794]	N
995	chr16	53810545	53810546	rs7187250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q12.2		rs7187250-A	NR	1E-24		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
995	chr16	53810545	53810546	rs7187250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs7187250-?	NR	2E-306				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53810545	53810546	rs7187250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.2		rs7187250-?	NR	1E-13				NR [~ 8900000] (imputed)	N
995	chr16	53810545	53810546	rs7187250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q12.2		rs7187250-?	NR	2E-27				NR [~ 8900000] (imputed)	N
995	chr16	53810685	53810686	rs7193144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	16q12.2		rs7193144-C	NR	3E-16		0.0864	[0.066-0.107] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
995	chr16	53810685	53810686	rs7193144	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	16q12.2	RPGRIP1L	rs7193144-?	NR	2E-9		0.0392	NR L increase	Affymetrix [9390170] (imputed)	N
995	chr16	53810685	53810686	rs7193144	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q12.2		rs7193144-T	NR	5E-11		1.089	[1.061-1.116]	Affymetrix [7846216] (imputed)	N
995	chr16	53810685	53810686	rs7193144	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Subscapular skin fold thickness	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs7193144-?		5E-6				NR [327872]	N
995	chr16	53810685	53810686	rs7193144	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs7193144-?		3E-6				NR [327872]	N
995	chr16	53810685	53810686	rs7193144	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16q12.2	NA	rs7193144-T	0.5933	3E-242		0.0728	[0.069-0.076] unit decrease	NR [~ 27400000] (imputed)	N
995	chr16	53810685	53810686	rs7193144	25888059	Cha S	2015-04-15	BMC Complement Altern Med	The obesity-risk variant of FTO is inversely related with the So-Eum constitutional type: genome-wide association and replication analyses.	Sasang constitutional medicine type (So-Eum)	1,905 Korean ancestry So-Eum type individuals, 1,905 Korean ancestry non-So-Eum type individuals	840 Korean ancestry So-Eum type individuals, 840 Korean ancestry non-So-Eum type individuals	16q12.2	FTO	rs7193144-T	0.858	1E-7		1.37	[1.22-1.54]	Affymetrix [311944]	N
995	chr16	53810942	53810943	rs62033399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs62033399-C	0.605402	6E-13				Affymetrix, Illumina [22063850] (imputed)	N
995	chr16	53810942	53810943	rs62033399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16q12.2	NR	rs62033399-C	0.603451	2E-15		0.015298	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
995	chr16	53811787	53811788	rs62033400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16q12.2		rs62033400-G	NR	2E-19		0.0463	[0.036-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
995	chr16	53811787	53811788	rs62033400	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	16q12.2		rs62033400-?	NR	1E-8		5.7393765	z score decrease	Affymetrix [NR] (imputed)	N
995	chr16	53811787	53811788	rs62033400	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	16q12.2	NR	rs62033400-G	0.102	6E-13		0.151	[0.11-0.19] unit increase	Affymetrix, Illumina [945603] (imputed)	N
995	chr16	53811787	53811788	rs62033400	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q12.2	FTO	rs62033400-A	0.605342	1E-11		0.0144912	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
995	chr16	53811787	53811788	rs62033400	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs62033400-?	NR	3E-28		0.08799231	[0.072-0.104] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53811787	53811788	rs62033400	24064335	Pei YF	2013-10-08	Hum Mol Genet	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	16q12.2	FTO	rs62033400-G	NR	2E-14		0.08	[0.060-0.100] kg/m2 increase	Affymetrix, Illumina [4325550] (imputed)	N
995	chr16	53812432	53812433	rs8063057	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.2	FTO	rs8063057-T	0.605341	5E-26		0.019986	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
995	chr16	53812770	53812774	rs71863246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16q12.2		rs71863246-A	NR	1E-16		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	4E-14		0.0187	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	1E-13		0.0181	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	4E-17		0.0205	[0.016-0.025] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	2E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	2E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	3E-18		0.0217	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	7E-20		0.0222	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	7E-18		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	1E-12		0.0173	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	16q12.2	NR	rs17817449-G	NR	1E-17		0.0208	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	16q12.2	FTO	rs17817449-G	0.40	2E-17		0.068	[0.052-0.084] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
995	chr16	53813366	53813367	rs17817449	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	16q12.2	NR	rs17817449-?		3E-10		0.018	[0.012-0.024] unit increase	Affymetrix [NR]	N
995	chr16	53813366	53813367	rs17817449	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q12.2		rs17817449-T	NR	5E-24		1.06	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53813366	53813367	rs17817449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs17817449-?	NR	5E-19		0.0602947	[0.047-0.074] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53813366	53813367	rs17817449	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.2	FTO	rs17817449-T	0.59	3E-21	(EA)	1.0526316	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.2	NR	rs17817449-T	0.59	2E-10		1.0752687	[1.04-1.11] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.2	FTO	rs17817449-?	0.5900000000000001	3E-7		1.098901	[1.05-1.12]	Illumina [10909381] (imputed)	N
995	chr16	53813366	53813367	rs17817449	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	16q12.2	FTO	rs17817449-?	0.59	5E-8		1.0526316	[1.01-1.09] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
995	chr16	53813366	53813367	rs17817449	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	16q12.2	NR	rs17817449-T	0.6	7E-13		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 14000000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	16q12.2	NR	rs17817449-T	0.6	2E-14		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.2	FTO, MIR1972-2	rs17817449-T	0.526	6E-7		1.09	[1.05-1.12]	Illumina [NR]	N
995	chr16	53813366	53813367	rs17817449	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q12.2	FTO, MIR1972-2	rs17817449-T	0.6	6E-14		1.08	[1.05-1.1]	Affymetrix, Illumina [~ 2600000] (imputed)	N
995	chr16	53813366	53813367	rs17817449	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	16q12.2	FTO	rs17817449-?	NR	2E-12	(obesity)			Illumina [~ 550000]	N
995	chr16	53813449	53813450	rs8043757	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs8043757-?	NR	8E-18		0.05782536	[0.045-0.071] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53813449	53813450	rs8043757	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	16q12.2	FTO	rs8043757-T	0.4	9E-8	(men)	0.041	[0.026-0.056] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr16	53813449	53813450	rs8043757	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	16q12.2	FTO	rs8043757-T	0.4	1E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr16	53813449	53813450	rs8043757	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16q12.2	FTO	rs8043757-T	0.4	5E-110	(Obesity class I)	1.23	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
995	chr16	53813497	53813498	rs8063946	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls, 2,340 European ancestry cases, 768 European ancestry controls	144 African American cases, 354 African American controls, up to 1,551 European ancestry cases, up to 1,393 European ancestry controls	16q12.2	FTO	rs8063946-?	NR	2E-7				Illumina [NR] (imputed)	N
995	chr16	53813951	53813952	rs145904814	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs145904814-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53814362	53814363	rs9972653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q12.2		rs9972653-T	NR	2E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
995	chr16	53814362	53814363	rs9972653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q12.2		rs9972653-T	NR	2E-10		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
995	chr16	53814362	53814363	rs9972653	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	16q12.2	FTO	rs9972653-G	NR	9E-16		0.0103266	[0.0078-0.0128] unit increase	Affymetrix [10061374] (imputed)	N
995	chr16	53814362	53814363	rs9972653	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative sugar intake	175,253 European ancestry individuals	59,454 European ancestry individuals	16q12.2	FTO	rs9972653-?		1E-11		0.02	[0.014-0.026] unit decrease	Affymetrix [NR]	N
995	chr16	53814362	53814363	rs9972653	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	16q12.2	FTO	rs9972653-?	NR	7E-9		0.0144383	[0.0095-0.0193] unit increase	Affymetrix [25921788] (imputed)	N
995	chr16	53814362	53814363	rs9972653	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Pure non-grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	16q12.2	FTO	rs9972653-G	0.5966	1E-9		0.0079	[0.0054-0.0104] unit increase	Affymetrix [~ 7740000] (imputed)	N
995	chr16	53814362	53814363	rs9972653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q12.2		rs9972653-?	NR	4E-15				NR [~ 8900000] (imputed)	N
995	chr16	53814362	53814363	rs9972653	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs9972653-?	NR	8E-12		0.014208	[0.01-0.018] unit decrease	Affymetrix [20259828] (imputed)	N
995	chr16	53814362	53814363	rs9972653	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.2	FTO	rs9972653-G	0.601605	1E-7	(women)	0.0227727	[0.014-0.032] unit decrease	NR [17166351] (imputed)	N
995	chr16	53814362	53814363	rs9972653	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.2	FTO	rs9972653-G	0.600034	7E-10		0.020378	[0.014-0.027] unit decrease	NR [17166351] (imputed)	N
995	chr16	53814362	53814363	rs9972653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	16q12.2	FTO	rs9972653-T	0.3942	5E-9		0.0697	[0.046-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53814362	53814363	rs9972653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	16q12.2	FTO	rs9972653-T	0.3942	2E-14		0.0909	[0.068-0.114] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53814469	53814470	rs62033401	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs62033401-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	16q12.2		rs8050136-?	NR	4E-19		0.0271	[0.0083-0.0459] unit decrease	NR [NR] (imputed)	N
995	chr16	53816274	53816275	rs8050136	31852448	Chiang KM	2019-12-18	BMC Genet	Genome-wide association study of morbid obesity in Han Chinese.	Obesity (extreme)	575 Han Chinese ancestry cases, 1,707 Han Chinese ancestry controls	535 Han Chinese ancestry cases, 9,145 Han Chinese ancestry controls	16q12.2	FTO	rs8050136-A		8E-10		1.51	[1.37-1.65]	Affymetrix [562523]	N
995	chr16	53816274	53816275	rs8050136	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q12.2	FTO	rs8050136-A	0.4029	2E-10		0.02464	[0.017-0.032] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
995	chr16	53816274	53816275	rs8050136	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Subscapular skin fold thickness	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs8050136-?		4E-6				NR [327872]	N
995	chr16	53816274	53816275	rs8050136	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs8050136-?		3E-6				NR [327872]	N
995	chr16	53816274	53816275	rs8050136	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs8050136-?	NR	7E-17		0.05594117	[0.043-0.069] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53816274	53816275	rs8050136	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	16q12.2	FTO	rs8050136-A	0.353	3E-23		0.0073	[0.0059-0.0087] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q12.2	FTO	rs8050136-A	0.4135	3E-39		0.106	[0.09-0.122] unit increase	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q12.2	FTO	rs8050136-A	0.4135	3E-26	(EA)	0.107	[0.087-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs8050136-A	0.3904	2E-18	(men)	0.0931	[0.072-0.114] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs8050136-A	0.4074	4E-39	(men)	0.0792	[0.067-0.091] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs8050136-?	NR	4E-54	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs8050136-A	0.4067	1E-52	(EA, men)	0.0857	[0.075-0.097] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs8050136-A	0.4055	2E-58	(men)	0.0844	[0.074-0.095] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16q12.2	FTO	rs8050136-C	0.6	2E-17		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
995	chr16	53816274	53816275	rs8050136	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	16q12.2	FTO	rs8050136-A	0.39	1E-7		5.26	[NR] z score increase	Affymetrix, Illumina [up to 583824] (imputed)	N
995	chr16	53816274	53816275	rs8050136	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	16q12.2	FTO	rs8050136-A	0.34	6E-6	(Indo-European South Asians)	1.16	[1.09-1.24]	Illumina [536420]	N
995	chr16	53816274	53816275	rs8050136	21706003	Kilpelainen TO	2011-06-26	Nat Genet	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	16q12.2	FTO	rs8050136-C	0.60	3E-26		0.06	[NR] % decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53816274	53816275	rs8050136	21037115	Wan ES	2010-10-29	Am J Respir Cell Mol Biol	Genome-wide association analysis of body mass in chronic obstructive pulmonary disease.	Body mass in chronic obstructive pulmonary disease	2,950 European ancestry cases	502 European ancestry cases	16q12.2	FTO	rs8050136-A	0.39	4E-8	(BMI)			Illumina [~ 550000]	N
995	chr16	53816274	53816275	rs8050136	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	FTO	rs8050136-A	0.41	5E-36		7.05	[5.95-8.15] percentage SD increase	Illumina [305846]	N
995	chr16	53816274	53816275	rs8050136	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	16q12.2	FTO	rs8050136-A	0.41	1E-47		8.04	[6.96-9.12] % SD increase	Illumina [305846]	N
995	chr16	53816274	53816275	rs8050136	19056611	Timpson NJ	2008-12-03	Diabetes	Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.	Type 2 diabetes	958 European ancestry obese cases, 955 European ancestry non-obese cases, 2,938 European ancestry controls	Up to 3,757 European ancestry cases, up to 5,346 European ancestry controls	16q12.2	FTO	rs8050136-?	NR	2E-17	(obese)	1.3	[1.23-1.39]	Affymetrix [393453]	N
995	chr16	53816274	53816275	rs8050136	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	16q12.2	FTO	rs8050136-A	NR	7E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [2202892] (imputed)	N
995	chr16	53816274	53816275	rs8050136	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	16q12.2	FTO	rs8050136-A	0.40	7E-14		1.23	[1.18-1.32]	Affymetrix [393453]	N
995	chr16	53816274	53816275	rs8050136	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	16q12.2	FTO	rs8050136-A	0.38	1E-12	(DGI+FUSION+WTCCC)	1.17	[1.12-1.22]	Illumina [315635]	N
995	chr16	53816962	53816963	rs181337907	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs181337907-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53817317	53817318	rs113191842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs113191842-?	NR	2E-69				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1103	7E-11		0.0763	[0.053-0.099] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1099	7E-7		0.0611	[0.037-0.085] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1099	7E-7		0.0611	[0.037-0.085] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1044	6E-7		0.1061	[0.064-0.148] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1101	3E-9		0.087	[0.058-0.116] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53817317	53817318	rs113191842	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs113191842-A	0.1103	1E-10		0.0757	[0.053-0.099] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53818459	53818460	rs3751812	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q12.2	FTO	rs3751812-T	0.3619	2E-18		0.0253	[0.02-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs3751812-T	0.4102	1E-15	(EA, men)	0.0986	[0.074-0.123] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs3751812-T	0.4063	5E-42	(EA)	0.1086	[0.093-0.124] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs3751812-T	0.3892	5E-41		0.1039	[0.089-0.119] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs3751812-T	0.3885	7E-28	(women)	0.1088	[0.089-0.128] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q12.2	FTO	rs3751812-T	0.4119	2E-19	(EA, men)	0.0783	[0.061-0.095] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs3751812-?	NR	3E-32	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs3751812-?	NR	3E-109				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs3751812-?	NR	2E-108	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53818459	53818460	rs3751812	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q12.2	FTO	rs3751812-T	0.396	6E-108		0.0803	[0.073-0.087] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q12.2	NR	rs9936385-T	0.61	1E-21		0.018	[0.014-0.022] unit decrease	NR [NR]	N
995	chr16	53819168	53819169	rs9936385	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	16q12.2	FTO	rs9936385-?	0.61	7E-13		0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
995	chr16	53819168	53819169	rs9936385	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	16q12.2	FTO	rs9936385-C	NR	1E-9	(additive model)	1.152	[1.11-1.2]	NR [9288881] (imputed)	N
995	chr16	53819168	53819169	rs9936385	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	16q12.2	FTO, CHD9, LOC643802, BL2, AKTIP, RPGRIP1, IRX3	rs9936385-C	0.39	2E-187				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	16q12.2	FTO, CHD9, LOC643802, BL2, AKTIP, RPGRIP1, IRX3	rs9936385-C	0.39	1E-97		0.073	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	16q12.2	FTO	rs9936385-C	0.39	5E-95		0.093	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16q12.2	FTO, CHD9, LOC643802, BL2, AKTIP, RPGRIP1, IRX3	rs9936385-C	0.39	4E-188				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	16q12.2	FTO	rs9936385-C	0.39	1E-12		1.13	[1.09-1.18]	Affymetrix, Illumina [2500000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	16q12.2	FTO	rs9936385-C	NR	6E-11	(female)	1.12	[1.08-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	16q12.2	FTO	rs9936385-C	NR	3E-18	(men)	1.14	[1.11-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
995	chr16	53819168	53819169	rs9936385	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	16q12.2	FTO	rs9936385-C	0.408448080917121	3E-23		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
995	chr16	53819892	53819893	rs11075990	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs11075990-?	NR	7E-16		0.05379159	[0.041-0.067] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53819892	53819893	rs11075990	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	16q12.2	FTO	rs11075990-G	0.4	2E-51		1.35	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
995	chr16	53820065	53820066	rs11075992	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	16q12.2	FTO	rs11075992-T	0.395	2E-10	(EA)	1.056859	[1.04-1.07]	Affymetrix [up to 12500000] (imputed)	N
995	chr16	53820502	53820503	rs9926289	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	16q12.2	NR	rs9926289-A	0.3977	7E-13		7.174	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
995	chr16	53820502	53820503	rs9926289	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs9926289-?		2E-6				NR [327872]	N
995	chr16	53820526	53820527	rs9939609	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Body mass index	8,842 Korean ancestry individuals	NA	16q12.2	FTO	rs9939609-?		1E-6				NR [327872]	N
995	chr16	53820526	53820527	rs9939609	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs9939609-?	NR	9E-16		0.05365296	[0.041-0.067] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53820526	53820527	rs9939609	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	16q12.2	NR	rs9939609-?	NR	1E-14				Affymetrix [NR]	N
995	chr16	53820526	53820527	rs9939609	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	16q12.2	NR	rs9939609-?	NR	2E-17				Affymetrix [NR]	N
995	chr16	53820526	53820527	rs9939609	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	16q12.2	FTO	rs9939609-A	0.40	1E-20	(Obese)	1.25	[1.19-1.30]	NR [NR]	N
995	chr16	53820526	53820527	rs9939609	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	16q12.2	FTO	rs9939609-A	0.40	3E-8		2.1	[1.32-2.88] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr16	53820526	53820527	rs9939609	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Biomedical quantitative traits	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	16q12.2	FTO	rs9939609-A	0.13	2E-7	(BMI)	0.24	[0.14-0.32] kg/m2 increase	Affymetrix [2156535] (imputed)	N
995	chr16	53820526	53820527	rs9939609	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	16q12.2	FTO	rs9939609-A	0.41	4E-51		0.33	[0.27-0.39] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
995	chr16	53820526	53820527	rs9939609	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	16q12.2	FTO	rs9939609-A	0.40	2E-7		1.34	[1.17-1.52]	Affymetrix [469557]	N
995	chr16	53820526	53820527	rs9939609	17434869	Frayling TM	2007-04-12	Science	A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity.	Body mass index	5,483 European ancestry type 2 diabetes cases, 5,174 European ancestry controls	19,424 European ancestry adult individuals, 10,172 European ancestry children	16q12.2	FTO	rs9939609-A	0.39	3E-35		0.36	[0.34 - 0.46] kg/m2 increase (adults)	Affymetrix [490032]	N
995	chr16	53820812	53820813	rs9937709	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	16q12.2	FTO	rs9937709-A	0.585	4E-11		6.602	[NR] z score increase	Affymetrix [14069427] (imputed)	N
995	chr16	53820812	53820813	rs9937709	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	16q12.2	FTO	rs9937709-A	0.587	4E-16	(EA)	0.04399	[0.033-0.055] unit increase	Affymetrix [up to 12500000] (imputed)	N
995	chr16	53820995	53820996	rs9927317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q12.2		rs9927317-G	NR	2E-17		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
995	chr16	53821124	53821125	rs17817712	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	16q12.2	NR	rs17817712-G	NR	2E-9		1.06	NR	NR [8016731] (imputed)	N
995	chr16	53821124	53821125	rs17817712	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index and bone mineral density (pleiotropy)	14,489 individuals	217,822 individuals	16q12.2		rs17817712-G	NR	1E-121		0.142	[0.13-0.15] unit increase	NR [6879267]	N
995	chr16	53821124	53821125	rs17817712	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index	14,489 individuals	217,822 individuals	16q12.2		rs17817712-G	NR	3E-10		0.082	[0.057-0.107] unit increase	NR [6879267]	N
995	chr16	53821124	53821125	rs17817712	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index	14,489 individuals	217,822 individuals	16q12.2		rs17817712-G	NR	2E-177		0.142	[0.13-0.15] unit increase	NR [6879267]	N
995	chr16	53821124	53821125	rs17817712	30045251	Lee MR	2018-07-01	Medicine (Baltimore)	Causal association of body mass index with hypertension using a Mendelian randomization design.	Body mass index	8,832 Korean ancestry individuals	NA	16q12.2	FTO	rs17817712-?	NR	1E-6		0.348	[0.21-0.49] unit increase	Affymetrix [1590162] (imputed)	N
995	chr16	53821614	53821615	rs7202116	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs7202116-?	NR	1E-15		0.05348474	[0.04-0.067] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53821614	53821615	rs7202116	22982992	Yang J	2012-09-12	Nature	FTO genotype is associated with phenotypic variability of body mass index.	Body mass index	133,154 European ancestry individuals	59,325 European ancestry individuals	16q12.2	FTO	rs7202116-G	0.402	2E-10	(discovery + validation)	0.036	[0.025-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2440000] (imputed)	N
995	chr16	53822169	53822170	rs113935429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q12.2		rs113935429-A	NR	1E-8		0.1044	[0.069-0.14] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
995	chr16	53822236	53822237	rs62033403	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16q12.2	FTO	rs62033403-A	0.6182	2E-13		0.0923	[0.068-0.117] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53822650	53822651	rs7185735	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs7185735-?	NR	1E-15		0.05351825	[0.04-0.067] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53822650	53822651	rs7185735	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	16q12.2	FTO	rs7185735-G	0.397306062260211	2E-47		0.1056	[0.091-0.12] unit increase	NR [5035015] (imputed)	N
995	chr16	53822650	53822651	rs7185735	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	16q12.2	FTO	rs7185735-A	0.59	2E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53822650	53822651	rs7185735	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Subcutaneous adipose tissue	7,399 European ancestry women, 7,381 European ancestry men, 2,163 African American women, 1,304 African American men	NA	16q12.2	FTO	rs7185735-A	0.58	1E-9		6.05	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
995	chr16	53822650	53822651	rs7185735	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	16q12.2	FTO	rs7185735-G	0.4	1E-79	(Obesity class II)	1.33	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
995	chr16	53823726	53823727	rs79994966	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	16q12.2	FTO	rs79994966-T	0.6256	1E-10		0.0522	[0.036-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53824006	53824007	rs11646715	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	16q12.2	FTO	rs11646715-G	0.477716	8E-10		0.05062956	[0.034-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
995	chr16	53824225	53824226	rs62033406	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	16q12.2		rs62033406-A	NR	3E-14		1.0901	NR	Affymetrix [7846216] (imputed)	N
995	chr16	53824225	53824226	rs62033406	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q12.2	FTO	rs62033406-A	0.5532	3E-9		0.0192	[0.013-0.025] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
995	chr16	53824225	53824226	rs62033406	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q12.2	NR	rs62033406-A	0.4563	2E-7	(women)	0.0244	[0.015-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
995	chr16	53824225	53824226	rs62033406	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	16q12.2	FTO	rs62033406-?	NR	2E-11				NR [5554549] (imputed)	N
995	chr16	53824225	53824226	rs62033406	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage	341,632 European ancestry individuals	NA	16q12.2	FTO	rs62033406-?	NR	1E-91				NR [5554549] (imputed)	N
995	chr16	53824225	53824226	rs62033406	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	16q12.2	FTO	rs62033406-G	0.407052	1E-11		0.055290177	[0.039-0.071] unit increase	Affymetrix [7288503] (imputed)	N
995	chr16	53824225	53824226	rs62033406	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q12.2	FTO	rs62033406-A	0.5983	6E-10		0.1219	[0.083-0.161] mmHg decrease	Affymetrix [NR] (imputed)	N
995	chr16	53824225	53824226	rs62033406	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	16q12.2	FTO	rs62033406-A	0.582	4E-7	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53824225	53824226	rs62033406	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	16q12.2	FTO	rs62033406-A	0.55	3E-8	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
995	chr16	53824225	53824226	rs62033406	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	16q12.2	FTO	rs62033406-?	NR	4E-7		0.062	[0.038-0.087] unit increase	Illumina [12039487] (imputed)	N
995	chr16	53824452	53824453	rs145076406	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs145076406-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53825487	53825488	rs9941349	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs9941349-?	NR	4E-21		0.06895291	[0.055-0.083] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53825487	53825488	rs9941349	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	16q12.2	FTO	rs9941349-T	0.423	2E-29	(EA, women)	0.1169	[0.097-0.137] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
995	chr16	53825487	53825488	rs9941349	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	16q12.2	FTO	rs9941349-T	0.43	6E-12		1.48	[1.33-1.66]	Illumina [457251]	N
995	chr16	53825904	53825905	rs56137030	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Body mass index	4,658 Korean ancestry females	5,295 Korean ancestry females	16q12.2	NR	rs56137030-A	0.13	3E-8		0.382	[0.25-0.52] unit increase	Affymetrix [NR] (imputed)	N
995	chr16	53825904	53825905	rs56137030	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Body fat mass	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	16q12.2	NR	rs56137030-?		5E-8		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
995	chr16	53826027	53826028	rs28567725	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q12.2	FTO	rs28567725-T	0.6227	2E-14		0.0211	[0.016-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
995	chr16	53826033	53826034	rs7187961	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q12.2	FTO	rs7187961-T	0.2129	3E-7		0.0428	[0.027-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53826033	53826034	rs7187961	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q12.2	FTO	rs7187961-T	0.2129	2E-10		0.0528	[0.037-0.069] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
995	chr16	53827478	53827479	rs10468280	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q12.2	NA	rs10468280-G		4E-36		0.0232299	[0.02-0.027] unit decrease	Illumina [13288253] (imputed)	N
995	chr16	53827961	53827962	rs62033408	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	16q12.2	FTO	rs62033408-A	0.678	1E-19		9.08	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
995	chr16	53828065	53828066	rs17817964	32193455	Ran S	2020-03-19	Sci Rep	Replication of FTO Gene associated with lean mass in a Meta-Analysis of Genome-Wide Association Studies.	Lean mass index	2,207 European ancestry individuals	44,296 European ancestry individuals	16q12.2	NR	rs17817964-?	NR	6E-12		0.1	[0.09-0.11] unit increase	Affymetrix [at least 746709] (imputed)	N
995	chr16	53828065	53828066	rs17817964	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs17817964-?	NR	3E-28		0.08899804	[0.073-0.105] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53828065	53828066	rs17817964	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	16q12.2	FTO	rs17817964-T	0.114	3E-8	(AA,Women)	0.071	[0.046-0.096] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
995	chr16	53828065	53828066	rs17817964	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	16q12.2	FTO	rs17817964-T	0.114	3E-11	(AA)	0.069	[0.049-0.089] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
995	chr16	53828065	53828066	rs17817964	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	16q12.2	FTO	rs17817964-T	0.114	1E-146		0.069	[0.049-0.089] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
995	chr16	53828065	53828066	rs17817964	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	16q12.2	FTO	rs17817964-T	0.12	1E-10	(AA and Sub-Saharan)	0.073	[0.051-0.095] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
995	chr16	53828503	53828504	rs111241709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs111241709-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53828967	53828968	rs73607075	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs73607075-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53829963	53829963	rs201399553	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	16q12.2	FTO	rs201399553-T	0.594033	3E-21		0.02253	[0.018-0.027] unit decrease	Affymetrix [19400838] (imputed)	N
995	chr16	53830092	53830093	rs185004749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs185004749-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53830464	53830465	rs9930506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs9930506-?	NR	4E-18		0.06184631	[0.048-0.076] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53830464	53830465	rs9930506	17658951	Scuteri A	2007-07-20	PLoS Genet	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinian individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	FTO	rs9930506-A	0.54	9E-7	(weight)	0.12	[NR] SD decrease	Affymetrix [362129]	N
995	chr16	53830464	53830465	rs9930506	17658951	Scuteri A	2007-07-20	PLoS Genet	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinian individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	FTO	rs9930506-A	0.54	9E-7	(BMI)	0.13	[NR] SD decrease	Affymetrix [362129]	N
995	chr16	53830464	53830465	rs9930506	17658951	Scuteri A	2007-07-20	PLoS Genet	Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.	Obesity-related traits	4,741 Sardinian individuals	3,205 African American, Hispanic, and European ancestry individuals	16q12.2	FTO	rs9930506-A	0.54	3E-8	(hip)	0.16	[NR] SD decrease	Affymetrix [362129]	N
995	chr16	53831145	53831146	rs9922708	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 8 years old	3,862 Norwegian ancestry individuals	2,087 Norwegian ancestry individuals	16q12.2	FTO	rs9922708-T	0.441564	3E-6		0.086	[0.049-0.123] unit increase	Illumina [~ 8500000] (imputed)	N
995	chr16	53831145	53831146	rs9922708	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 7 years old	4,629 Norwegian ancestry individuals	2,638 Norwegian ancestry individuals	16q12.2	FTO	rs9922708-T	0.441564	3E-12		0.117	[0.084-0.15] unit increase	Illumina [~ 8500000] (imputed)	N
995	chr16	53831353	53831354	rs72805611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q12.2		rs72805611-T	0.210504622	2E-9		0.061095238	[0.041-0.081] unit increase	Illumina [13134967] (imputed)	N
995	chr16	53831770	53831771	rs9922619	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	16q12.2	FTO	rs9922619-?	NR	2E-11		0.0766643	[0.045-0.108] unit increase	NR [6787908] (imputed)	N
995	chr16	53831770	53831771	rs9922619	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16q12.2	FTO	rs9922619-T	0.44	6E-8	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
995	chr16	53834606	53834607	rs7188250	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	16q12.2	FTO	rs7188250-?	NR	7E-19		3.57733E-4	[-0.0045-0.00521] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53834606	53834607	rs7188250	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	16q12.2	FTO	rs7188250-?	NR	7E-19		0.0218913	[0.017-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53837341	53837342	rs72805613	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16q12.2	FTO	rs72805613-A	0.5866	3E-9		0.01425656	[0.0095-0.019] unit increase	Affymetrix [11515109] (imputed)	N
995	chr16	53839035	53839036	rs62033417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs62033417-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53839134	53839135	rs8044769	22763110	Zeggini E	2012-07-03	Lancet	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	16q12.2	FTO	rs8044769-C	0.50	4E-6		1.07	[1.04-1.10]	Illumina [485491]	N
995	chr16	53842907	53842908	rs12149832	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	16q12.2	FTO	rs12149832-G	0.79	4E-8		1.16	[1.10-1.22]	Illumina [9332516] (imputed)	N
995	chr16	53842907	53842908	rs12149832	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	16q12.2	NR	rs12149832-?	NR	1E-25		0.08310456	[0.068-0.099] unit increase	Illumina [32062178] (imputed)	N
995	chr16	53842907	53842908	rs12149832	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	16q12.2	FTO	rs12149832-A	0.20	5E-22		0.073	[0.057-0.089] unit increase	Illumina [2178018] (imputed)	N
995	chr16	53845168	53845169	rs11649091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q12.2		rs11649091-G	NR	4E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
995	chr16	53845168	53845169	rs11649091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q12.2		rs11649091-G	NR	1E-8		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
995	chr16	53845486	53845487	rs11642841	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	16q12.2	FTO	rs11642841-?	NR	8E-6		4.46	NR unit increase	Illumina [up to 1520000] (imputed)	N
995	chr16	53845486	53845487	rs11642841	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	16q12.2	FTO	rs11642841-?	NR	1E-11	(male)	0.0248482	[0.018-0.032] unit decrease	Affymetrix [25921788] (imputed)	N
995	chr16	53845486	53845487	rs11642841	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	16q12.2	FTO	rs11642841-C	0.6	4E-8		0.93	[0.6-1.26] g/day increase	Affymetrix [10353649] (imputed)	N
995	chr16	53845486	53845487	rs11642841	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	16q12.2	FTO	rs11642841-A		3E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [2426886] (imputed)	N
995	chr16	53846616	53846617	rs117095258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs117095258-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53854687	53854688	rs8054859	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	321 European and unknown ancestry genotoxic compound-exposed cases, 286 European and unknown ancestry genotoxic compound-exposed controls, 333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	16q12.2	FTO	rs8054859-?	NR	7E-7		1.55	[NR]	Illumina [> 2600000] (imputed)	N
995	chr16	53854687	53854688	rs8054859	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	16q12.2	FTO	rs8054859-?	NR	4E-6		0.08	[NR] unit increase	Illumina [> 2600000] (imputed)	N
995	chr16	53854763	53854764	rs8054908	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs8054908-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53855290	53855291	rs11075995	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q12.2		rs11075995-A	NR	3E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
995	chr16	53855290	53855291	rs11075995	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.2	FTO	rs11075995-A	0.24	9E-9	(EA)	1.03	[1.01-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
995	chr16	53855290	53855291	rs11075995	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.2	FTO	rs11075995-A	0.3	1E-10		1.09	[1.06-1.12]	Illumina [~ 11500000] (imputed)	N
995	chr16	53855290	53855291	rs11075995	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	16q12.2	FTO	rs11075995-?	0.24	3E-8		1.11	[1.07-1.15]	Illumina [10909381] (imputed)	N
995	chr16	53855290	53855291	rs11075995	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	16q12.2	FTO	rs11075995-?	0.24	2E-6		1.01	[0.97-1.06] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
995	chr16	53855290	53855291	rs11075995	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	16q12.2	NR	rs11075995-A	0.24	1E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
995	chr16	53855290	53855291	rs11075995	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	16q12.2	FTO, KIAA1752	rs11075995-?	0.24	4E-8		1.11	[1.07-1.15]	Illumina [NR]	N
995	chr16	53860051	53860052	rs79206939	27558924	Kim HS	2016-08-24	Gut	A coding variant in FTO confers susceptibility to thiopurine-induced leukopenia in East Asian patients with IBD.	Thiopurine-induced leukopenia in inflammatory bowel disease	113 Korean ancestry cases, 154 Korean ancestry controls	245 East Asian ancestry cases, 522 East Asian ancestry controls	16q12.2	FTO	rs79206939-A	0.015	1E-8		4.3	[2.50-7.40]	Affymetrix [505014]	N
995	chr16	53865974	53865975	rs9302652	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs9302652-?	NR	2E-31				Affymetrix [~ 8270000] (imputed)	N
995	chr16	53865974	53865975	rs9302652	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q12.2	NA	rs9302652-T	0.7344	4E-15		0.0152	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
995	chr16	53865974	53865975	rs9302652	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16q12.2	NR	rs9302652-T	0.7344	4E-15		0.0152	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
995	chr16	53865974	53865975	rs9302652	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q12.2	NA	rs9302652-T	0.735	9E-40		0.0243	[0.021-0.028] unit decrease	NR [~ 27400000] (imputed)	N
996	chr16	53886223	53886224	rs7189997	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	16q12.2	FTO	rs7189997-G	0.009	3E-7		2.44	[1.73-3.42]	Illumina [1438399] (imputed)	N
996	chr16	53887737	53887738	rs12597422	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	16q12.2	FTO, FTO-IT1, RPGRIP1L	rs12597422-?	NR	3E-6				Illumina [9143600] (imputed)	N
996	chr16	53906851	53906852	rs7188378	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs7188378-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
996	chr16	53908483	53908484	rs10521305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16q12.2		rs10521305-?	NR	2E-8				NR [~ 8900000] (imputed)	N
996	chr16	53912363	53912364	rs8061064	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	16q12.2	FTO	rs8061064-A	0.4627	4E-8		0.0407	[0.026-0.055] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
996	chr16	53931912	53931913	rs12920255	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs12920255-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
996	chr16	53931912	53931913	rs12920255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q12.2		rs12920255-?	NR	2E-8				NR [~ 8900000] (imputed)	N
996	chr16	53935406	53935407	rs35420030	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q12.2	FTO	rs35420030-T	0.9466	3E-17		0.045	[0.035-0.055] unit decrease	Affymetrix [19819130] (imputed)	N
996	chr16	53935406	53935407	rs35420030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q12.2		rs35420030-?	NR	5E-14				NR [~ 8900000] (imputed)	N
996	chr16	53939593	53939594	rs79970796	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	16q12.2	FTO	rs79970796-A	0.0131	8E-6	(male)	0.5142	[0.29-0.74] unit increase	NR [NR] (imputed)	N
996	chr16	53939593	53939594	rs79970796	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	16q12.2	FTO	rs79970796-A	NR	8E-6	(male)	0.5142	[0.29-0.74] unit increase	NR [NR] (imputed)	N
996	chr16	53982748	53982749	rs7197239	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.2	NR	rs7197239-?	NR	5E-6				Affymetrix [NR]	N
997	chr16	54019652	54019653	rs76536391	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FTO	rs76536391-?	NR	6E-11		1.41947	[NR] unit increase	Affymetrix [NR] (imputed)	N
997	chr16	54020441	54020442	rs9924983	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.2	FTO	rs9924983-C	0.458856	4E-9		0.0110109	[0.0073-0.0147] unit increase	NR [13737936] (imputed)	N
997	chr16	54027970	54027971	rs12596210	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	16q12.2	FTO	rs12596210-C	0.12	9E-6		0.12	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
997	chr16	54042040	54042041	rs8049988	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	16q12.2		rs8049988-G	NR	3E-6		1.2175		Illumina [up to 7574753] (imputed)	N
997	chr16	54060204	54060205	rs7195994	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	16q12.2	FTO	rs7195994-?		1E-8	(Infliximab)	0.48	[0.32-0.64] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
997	chr16	54090494	54090495	rs7187423	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	16q12.2	FTO	rs7187423-?	NR	6E-7	(AA)	2.02	[1.75-2.30]	Affymetrix, Illumina [NR] (imputed)	N
997	chr16	54101460	54101461	rs12600060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.2		rs12600060-?	NR	3E-16				NR [~ 8900000] (imputed)	N
997	chr16	54101460	54101461	rs12600060	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs12600060-?	NR	8E-14		0.0198229	[0.015-0.025] unit increase	Affymetrix [20259828] (imputed)	N
997	chr16	54102261	54102262	rs180822947	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ezakiellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	16q12.2		rs180822947-T	0.0125654	5E-8		0.20625	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
997	chr16	54105970	54105971	rs2540766	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.2	NR	rs2540766-?	NR	2E-14				Affymetrix [NR]	N
997	chr16	54114823	54114824	rs16953002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q12.2		rs16953002-?	NR	5E-11				NR [~ 8900000] (imputed)	N
997	chr16	54114823	54114824	rs16953002	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q12.2	FTO	rs16953002-A	0.1621	3E-13		1.19	NR	Affymetrix [9154080] (imputed)	N
997	chr16	54114823	54114824	rs16953002	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	16q12.2	FTO	rs16953002-A	0.17	4E-12		1.16	[NR]	Illumina [at least 560000] (imputed)	N
997	chr16	54114823	54114824	rs16953002	23455637	Iles MM	2013-03-03	Nat Genet	A variant in FTO shows association with melanoma risk not due to BMI.	Melanoma	1,353 European ancestry cases, 3,566 European ancestry controls	12,313 European ancestry cases, Up to 55,667 European ancestry controls	16q12.2	FTO	rs16953002-A	0.17	4E-12		1.16	[1.11-1.20]	Illumina [2600000] (imputed)	N
997	chr16	54115828	54115829	rs12596638	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	16q12.2	FTO	rs12596638-?	NR	2E-8				Affymetrix, Illumina [7850345] (imputed)	N
997	chr16	54118131	54118132	rs62034121	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	16q12.2	FTO	rs62034121-C	0.822836	5E-14				Affymetrix, Illumina [NR] (imputed)	N
997	chr16	54118131	54118132	rs62034121	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q12.2	FTO	rs62034121-?	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
997	chr16	54131938	54131939	rs62034139	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	16q12.2	AC007347.1	rs62034139-G	0.825577	3E-8				Affymetrix, Illumina [NR] (imputed)	N
998	chr16	54141566	54141566	rs56077980	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.2	NR	rs56077980-CT	0.3172	2E-7	(EA)	0.0346	[0.021-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
998	chr16	54148627	54148628	rs62034143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q12.2	NR	rs62034143-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
998	chr16	54148627	54148628	rs62034143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q12.2		rs62034143-?	NR	4E-10				NR [~ 8900000] (imputed)	N
998	chr16	54152729	54152730	rs2072518	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q12.2	NA	rs2072518-A	0.5707	7E-11		0.0107	[0.0076-0.0138] unit increase	NR [~ 27400000] (imputed)	N
998	chr16	54193659	54193660	rs2689244	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	16q12.2	Intergenic	rs2689244-?	NR	4E-6		1.06	[1.04-1.08]	Affymetrix, Illumina [39235000] (imputed)	N
998	chr16	54206714	54206715	rs2542673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.2		rs2542673-A	0.3243	6E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
998	chr16	54206714	54206715	rs2542673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q12.2	Intergenic	rs2542673-A	0.3243	1E-8	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
998	chr16	54206735	54206736	rs2140440	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q12.2		rs2140440-A	0.6755	1E-8	(conditional-joint)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
999	chr16	54311402	54311405	rs113428591	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q12.2	NR	rs113428591-?	NR	2E-7		0.0614	[0.038-0.084] unit increase	Illumina [at least 560000] (imputed)	N
999	chr16	54312848	54312849	rs16953305	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16q12.2	IRX3	rs16953305-?	NR	2E-8		0.011788915	[0.0077-0.0159] unit increase	NR [7306098]	N
999	chr16	54371830	54371831	rs60889063	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	16q12.2	IRX3, CRNDE	rs60889063-A	NR	4E-6		4.593	NR z score increase	Illumina [7839440] (imputed)	N
999	chr16	54387083	54387084	rs2216063	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q12.2	NR	rs2216063-G	0.1982	3E-8		0.0296	[0.019-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1000	chr16	54413729	54413730	rs8050506	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	16q12.2	IRX3	rs8050506-A	0.211	8E-7		1.29	[1.17-1.43]	Illumina [1438399] (imputed)	N
1000	chr16	54415526	54415527	rs74367983	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q12.2	IRX3, IRX5	rs74367983-A	0.036	2E-36		12.6	z-score increase	Affymetrix [4314223] (imputed)	N
1000	chr16	54421824	54421825	rs17257349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q12.2	NR	rs17257349-A	0.339299	3E-10		0.012838	[0.0088-0.0168] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1000	chr16	54425187	54425188	rs79390766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q12.2		rs79390766-A	NR	4E-32		0.0455	[0.038-0.053] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1000	chr16	54425187	54425188	rs79390766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	16q12.2		rs79390766-A	0.14463	5E-9		0.0291539	[0.019-0.039] unit increase	Illumina [13478956] (imputed)	N
1000	chr16	54425187	54425188	rs79390766	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q12.2	NR	rs79390766-A	NR	4E-13		0.0457	[0.033-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1000	chr16	54425187	54425188	rs79390766	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	16q12.2	NR	rs79390766-A	NR	1E-30		0.0727	[0.06-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	8E-9	(GPNMB)	0.09005	NR unit decrease	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	8E-11	(ALDH5A1)	0.4114	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	6E-9	(ACSS3)	0.2765	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	4E-9	(DHTKD1)	0.09522	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	2E-9	(HIBADH)	0.4552	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	1E-8	(OTC)	1.955	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54431932	54431933	rs75366222	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs75366222-C	0.01045	1E-15	(COL6A3)	0.8146	NR unit increase	Illumina [1671387] (imputed)	N
1000	chr16	54451746	54451747	rs12922549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q12.2		rs12922549-T	NR	1E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1000	chr16	54451746	54451747	rs12922549	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q12.2	NR	rs12922549-T	0.2378	7E-17		0.00225	[0.0017-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
1000	chr16	54456352	54456353	rs11645463	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	16q12.2	IRX3	rs11645463-A	0.54	1E-9		1.22	[1.15 - 1.30]	Affymetrix, Illumina [6990521] (imputed)	N
1000	chr16	54469330	54469331	rs7188897	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	16q12.2	NR	rs7188897-T	NR	2E-9		1.046	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1000	chr16	54489792	54489793	rs2388639	24486069	Park HW	2014-01-31	J Allergy Clin Immunol	Genetic predictors associated with improvement of asthma symptoms in response to inhaled corticosteroids.	Asthma (corticosteroid response)	124 European ancestry individuals	297 European ancestry individuals	16q12.2	LOC728792	rs2388639-?	0.19	9E-9		0.878	[NR] unit increase	Illumina [440862]	N
1000	chr16	54494423	54494424	rs9921518	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	16q12.2	IRX5, IRX3	rs9921518-?	0.28	9E-6		2.11	[1.52-2.93]	Affymetrix [832357]	N
1001	chr16	54546812	54546813	rs17260689	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q12.2	IRX3	rs17260689-T	0.298	3E-10		0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1001	chr16	54546812	54546813	rs17260689	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q12.2	IRX3	rs17260689-T	0.3015	3E-8		0.011760388	[0.0076-0.0159] unit decrease	Illumina [9339358] (imputed)	N
1001	chr16	54587852	54587853	rs79219469	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q12.2	LINC02183	rs79219469-?		2E-7		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
1001	chr16	54587852	54587853	rs79219469	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q12.2	Intergenic	rs79219469-?		2E-7		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
1001	chr16	54587852	54587853	rs79219469	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q12.2	LINC02183	rs79219469-?		3E-8		2.25	[1.12-1.26]	Illumina [7645193] (imputed)	N
1001	chr16	54598336	54598337	rs1186818	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16q12.2	LOC101927480, LINC02140	rs1186818-G	0.24	9E-9		0.43	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1001	chr16	54598336	54598337	rs1186818	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16q12.2	LOC101927480, LINC02140	rs1186818-G	0.2402	1E-7		0.4149	[0.26-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1001	chr16	54607908	54607909	rs8054533	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			AC079412.1	rs8054533-T	0.3951	2E-9		0.0511127	[0.035-0.068] unit increase	Affymetrix [8165723] (imputed)	N
1001	chr16	54630498	54630499	rs75921351	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	16q12.2	IRX3	rs75921351-C	0.0304	8E-7		2.1691973	[1.59-2.95]	Illumina [7521072] (imputed)	N
1002	chr16	54662943	54662944	rs72622262	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	16q12.2	CRNDE, IRX5	rs72622262-C	0.83	1E-11		1.36	[1.25 - 1.49]	Affymetrix, Illumina [6990521] (imputed)	N
1002	chr16	54678304	54678305	rs13380763	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	16q12.2	NR	rs13380763-C	NR	2E-9		1.056	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1002	chr16	54682063	54682064	rs28539243	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q12.2		rs28539243-A	NR	1E-15		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1002	chr16	54682063	54682064	rs28539243	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q12.2	intergenic	rs28539243-A	0.49	9E-15	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1002	chr16	54684564	54684565	rs17264549	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC007491.1	rs17264549-?	NR	8E-10	(male)	3.27512	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr16	54796349	54796350	rs75177768	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	16q12.2	CRNDE	rs75177768-C	0.02	4E-6		0.17	[0.092-0.248] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1003	chr16	54882662	54882663	rs7199790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q12.2	NR	rs7199790-?	NR	3E-15				Affymetrix [NR]	N
1003	chr16	54906894	54906895	rs9932117	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x pumpkin consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	16q12.2		rs9932117-C	NR	5E-6		0.2347	[0.13-0.34] unit increase	Illumina [285387]	N
1004	chr16	54975734	54975735	rs12933070	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs12933070-?	NR	9E-16		0.0193353	[0.014-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1004	chr16	54978737	54978738	rs184301719	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	16q12.2	NR	rs184301719-?	NR	8E-6		0.886652	[0.5-1.28] unit increase	NR [13958389] (imputed)	N
1004	chr16	54991559	54991560	rs13334558	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.2	IRX5	rs13334558-T	0.209445	2E-15		0.0181119	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
1004	chr16	55005320	55005321	rs4783860	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	16q12.2	NR	rs4783860-?	NR	7E-6		3.196	[1.86-4.53] unit decrease	Illumina [498648]	N
1004	chr16	55043666	55043667	rs4622507	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	16q12.2	IRX5	rs4622507-C	0.26	2E-6	(Age 17)	0.15	[0.091-0.209] unit increase	Illumina [2293137] (imputed)	N
1004	chr16	55048852	55048852	rs34725069	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs34725069-?	NR	8E-33		0.0353369	[0.029-0.041] unit increase	Affymetrix [20259828] (imputed)	N
1004	chr16	55048852	55048852	rs34725069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.2	IRX5	rs34725069-A	0.143065	2E-6	(men)	0.0342627	[0.02-0.049] unit increase	NR [17166351] (imputed)	N
1004	chr16	55048852	55048852	rs34725069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.2	IRX5	rs34725069-A	0.142384	2E-13		0.0351368	[0.025-0.045] unit increase	NR [17166351] (imputed)	N
1004	chr16	55048852	55048852	rs34725069	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q12.2	IRX5	rs34725069-A	0.14179	1E-8	(women)	0.0377966	[0.024-0.051] unit increase	NR [17166351] (imputed)	N
1005	chr16	55059129	55059130	rs12149673	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.2	IRX5	rs12149673-A	0.699186	8E-48		0.0293589	[0.025-0.033] unit decrease	NR [13737936] (imputed)	N
1005	chr16	55059129	55059130	rs12149673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.2		rs12149673-?	NR	9E-43				NR [~ 8900000] (imputed)	N
1005	chr16	55059129	55059130	rs12149673	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs12149673-?	NR	5E-37		0.0288559	[0.024-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1005	chr16	55069775	55069776	rs4784463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q12.2		rs4784463-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1005	chr16	55072006	55072007	rs17208368	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	16q12.2	IRX5	rs17208368-A	0.159	3E-15		1.41	[NR]	Illumina [8207076] (imputed)	N
1005	chr16	55073589	55073590	rs4784464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q12.2		rs4784464-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1005	chr16	55115873	55115874	rs117122953	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	16q12.2	IRX5, CRNDE, IRX6	rs117122953-T	0.012	4E-7		0.33	[0.2-0.46] unit decrease	Illumina [10000000] (imputed)	N
1005	chr16	55127190	55127191	rs12918462	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs12918462-?	NR	9E-21		0.0385501	[0.03-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
1005	chr16	55127884	55127885	rs60833045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.2		rs60833045-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1006	chr16	55214092	55214093	rs728571	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	16q12.2	NR	rs728571-?	0.61	6E-6	(Mexican, additive )	1.4925373		Affymetrix [NR]	N
1006	chr16	55245036	55245037	rs17291845	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	16q12.2	AC109462.1	rs17291845-A	0.13	5E-6	(simple RT)	0.19	[0.11-0.27] unit increase	Illumina [~ 610000]	N
1006	chr16	55255190	55255191	rs2001970	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16q12.2	IRX6	rs2001970-T	0.51	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1006	chr16	55262590	55262591	rs4784505	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16q12.2	NR	rs4784505-C	0.483	3E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1007	chr16	55314109	55314110	rs991057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q12.2	NR	rs991057-C	0.511449	3E-11		0.012295	[0.0087-0.0159] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1007	chr16	55315835	55315836	rs30922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs30922-T	0.73467	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
1007	chr16	55315835	55315836	rs30922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q12.2	NR	rs30922-T	0.732054	5E-10				Affymetrix, Illumina [24558453] (imputed)	N
1007	chr16	55316495	55316496	rs30923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q12.2		rs30923-A	NR	1E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1007	chr16	55316936	55316937	rs30925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q12.2		rs30925-G	NR	3E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1007	chr16	55316936	55316937	rs30925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q12.2		rs30925-G	NR	3E-8		0.0092	[0.0059-0.0125] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1007	chr16	55319411	55319412	rs30934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q12.2	NR	rs30934-A	0.447553	2E-10		0.011863	[0.0082-0.0155] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1007	chr16	55319411	55319412	rs30934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q12.2		rs30934-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1007	chr16	55322731	55322732	rs12930459	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	16q12.2	RN7SL841P	rs12930459-A	0.818278	5E-9				Affymetrix, Illumina [NR] (imputed)	N
1007	chr16	55341134	55341135	rs6499755	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	16q12.2	IRX6	rs6499755-C	0.367	1E-8		1.22	[NR]	Illumina [8207076] (imputed)	N
1007	chr16	55381238	55381239	rs145065165	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	16q12.2	RPL31P56	rs145065165-G	0.0223	2E-7		2.8735633	[1.93-4.29]	Illumina [7521072] (imputed)	N
1007	chr16	55397253	55397254	rs75740990	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of premeditation	22,774 European ancestry individuals	NA	16q12.2	IRX6, MMP2	rs75740990-C	0.931	8E-7		0.087	[0.122-0.053] unit decrease	Illumina [11455628] (imputed)	N
1008	chr16	55492794	55492795	rs78417468	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	16q12.2		rs78417468-?	NR	1E-8		5.681603	z score decrease	Affymetrix [NR] (imputed)	N
1008	chr16	55492931	55492932	rs62026817	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q12.2	IRX5, MMP2	rs62026817-?		7E-10				Affymetrix, Illumina [NR] (imputed)	N
1008	chr16	55504567	55504568	rs1561220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q12.2		rs1561220-G	NR	5E-8		0.0092	[0.0059-0.0125] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1008	chr16	55510925	55510925	rs774904233	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q12.2		rs774904233-?	NR	7E-23		0.023388	[0.019-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1008	chr16	55511536	55511537	rs243866	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q12.2	MMP2	rs243866-G	0.741541	5E-26		0.0223341	[0.018-0.026] unit decrease	NR [13737936] (imputed)	N
1008	chr16	55511536	55511537	rs243866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q12.2		rs243866-?	NR	6E-30				NR [~ 8900000] (imputed)	N
1008	chr16	55538739	55538740	rs142319636	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	16q12.2	NR	rs142319636-G	0.04	8E-7		1.69	[1.37-2.08]	Illumina [9875636] (imputed)	N
1009	chr16	55604127	55604128	rs6499766	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	16q12.2	CAPNS2, LPCAT2	rs6499766-A	0.478	5E-8	(FT4-Males)	0.099	[0.064-0.134] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1009	chr16	55604127	55604128	rs6499766	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	16q12.2	CAPNS2, LPCAT2	rs6499766-A	0.478	1E-6	(FT4)	0.056	[0.032-0.08] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1009	chr16	55680273	55680274	rs148555550	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q12.2		rs148555550-?	NR	9E-6		1.1645758	[1.08892297856675-1.24548458655451]	Illumina [up to 7827597] (imputed)	N
1009	chr16	55699524	55699525	rs40434	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q12.2	SLC6A2	rs40434-G	0.390748	3E-10		0.016702	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1010	chr16	55718096	55718097	rs147174681	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q12.2	SLC6A2	rs147174681-G	0.999	3E-6	(AA)	2.216	NR unit increase	Illumina [NR] (imputed)	N
1010	chr16	55741203	55741204	rs28544888	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q12.2	SLC6A2	rs28544888-C	0.911008	2E-8		0.02579	[0.017-0.035] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1010	chr16	55790466	55790467	rs183182936	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7748 sp900314535 abundance in stool	5,959 Finnish ancestry individuals	NA	16q12.2		rs183182936-T	0.0123889	2E-8		0.169374	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1011	chr16	55844608	55844609	rs2244613	23467860	Pare G	2013-03-06	Circulation	Genetic determinants of dabigatran plasma levels and their relation to bleeding.	Response to dabigatran etexilate treatment	1,490 European ancestry atrial fibrillation cases at risk of stroke	204 European ancestry atrial fibrillation cases at risk of stroke, 66 Latin American atrial fibrillation cases at risk of stroke, 1 Arab ancestry atrial fibrillation cases at risk of stroke, 5 Black African atrial fibrillation cases at risk of stroke, 25 East Asian ancestry atrial fibrillation cases at risk of stroke, 1 Colored African atrial fibrillation cases at risk of stroke, 9 South Asian ancestry atrial fibrillation cases at risk of stroke, 15 Asian ancestry atrial fibrillation cases at risk of stroke, 134 atrial fibrillation cases at risk of stroke	16q12.2	CES1	rs2244613-?	0.82	5E-7	(Trough concentrations)	1.16	[1.10-1.22]	Illumina [551203]	N
1011	chr16	55850061	55850062	rs4114840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q12.2		rs4114840-A	NR	1E-12		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1011	chr16	55853544	55853545	rs115629050	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q12.2	NR	rs115629050-A	0.0453	3E-9	(MACF1)	0.03379	NR unit decrease	Illumina [1671387] (imputed)	N
1011	chr16	55861793	55861794	rs8192935	23467860	Pare G	2013-03-06	Circulation	Genetic determinants of dabigatran plasma levels and their relation to bleeding.	Response to dabigatran etexilate treatment	1,490 European ancestry atrial fibrillation cases at risk of stroke	204 European ancestry atrial fibrillation cases at risk of stroke, 66 Latin American atrial fibrillation cases at risk of stroke, 1 Arab ancestry atrial fibrillation cases at risk of stroke, 5 Black African atrial fibrillation cases at risk of stroke, 25 East Asian ancestry atrial fibrillation cases at risk of stroke, 1 Colored African atrial fibrillation cases at risk of stroke, 9 South Asian ancestry atrial fibrillation cases at risk of stroke, 15 Asian ancestry atrial fibrillation cases at risk of stroke, 134 atrial fibrillation cases at risk of stroke	16q12.2	CES1	rs8192935-?	0.67	1E-6	(Peak concentrations)	1.12	[1.08-1.18]	Illumina [551203]	N
1011	chr16	55879619	55879620	rs7184362	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	16q12.2	NR	rs7184362-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1011	chr16	55903371	55903372	rs567091563	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		16q12.2	intergenic	rs567091563-T	0.0322116	6E-6		1.22091	[0.7-1.74] unit increase	Illumina [640625] (imputed)	N
1011	chr16	55939737	55939738	rs17319026	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Anaerostipes id.1991)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q12.2		rs17319026-A	NR	5E-8		5.4632688	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1012	chr16	56003242	56003243	rs9931242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q12.2		rs9931242-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1012	chr16	56006107	56006108	rs1949072	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	16q12.2	NR	rs1949072-A	0.4342	2E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1012	chr16	56036520	56036521	rs550163766	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16q13	NR	rs550163766-?	NR	2E-6		1.5495	[0.91-2.19] unit increase	NR [13958389] (imputed)	N
1012	chr16	56089862	56089863	rs117310695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117310695-A	NR	3E-10		0.0337	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1013	chr16	56119966	56119966	rs71381105	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	16q13	NR	rs71381105-A	0.9299	1E-7		0.3257	[0.21-0.45] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr16	56119966	56119966	rs71381105	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	16q13	NR	rs71381105-A	0.9299	1E-7		0.3267	[0.2-0.45] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1013	chr16	56120460	56120461	rs8050478	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	16q13	NR	rs8050478-G	NR	3E-14		0.948	unit increase	Affymetrix [14661600] (imputed)	N
1013	chr16	56128781	56128782	rs9931543	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q13	NR	rs9931543-T	0.7359	1E-12		1.049	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1013	chr16	56128781	56128782	rs9931543	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q13	NA	rs9931543-T	0.7367	2E-9	(Female)	1.052	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1013	chr16	56128781	56128782	rs9931543	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16q13	NR	rs9931543-T	0.7339	4E-6		0.015446475	[0.0089-0.022] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1013	chr16	56129243	56129244	rs1592544	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	16q13	GNAO1, CES5A	rs1592544-C		6E-17		0.0072	[0.0054-0.009] unit increase	Affymetrix [13304133] (imputed)	N
1013	chr16	56147645	56147646	rs6499821	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q13	CES5A, GNAO1	rs6499821-A	0.9011	2E-10		0.0180586	[0.013-0.024] unit increase	Affymetrix [11880941] (imputed)	N
1013	chr16	56157052	56157053	rs1110698	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q13		rs1110698-A	0.07882	3E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1013	chr16	56162684	56162685	rs144475339	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	GNAO1	rs144475339-G	0.98944	3E-8		0.0581392	[0.038-0.079] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr16	56207768	56207769	rs56313388	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q13	chr16mb56	rs56313388-C	0.281805696	3E-6		0.1662	[0.097-0.235] unit increase	Affymetrix [~ 9800000] (imputed)	N
1013	chr16	56215935	56215936	rs1734197	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	16q13		rs1734197-?	NR	2E-8				NR [7857346] (imputed)	N
1013	chr16	56215935	56215936	rs1734197	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q13	RP11-461O7.1	rs1734197-?	NR	2E-8		0.0097447	[0.0063-0.0132] unit increase	Affymetrix [805426] (imputed)	N
1013	chr16	56227964	56227965	rs59779556	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	16q13	GNAO1	rs59779556-T	NR	2E-8		1.025		NR [14661600] (imputed)	N
1014	chr16	56236695	56236696	rs72814432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q13	Intergenic	rs72814432-A	0.638	3E-8	(MTAG)	0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1014	chr16	56250524	56250525	rs117182053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117182053-T	NR	2E-25		0.0924	[0.075-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
1014	chr16	56250524	56250525	rs117182053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs117182053-T	NR	3E-16		0.0726	[0.055-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1014	chr16	56261428	56261429	rs11076146	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	16q13		rs11076146-G	0.44	3E-9		0.0146	[0.0098-0.0194] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1014	chr16	56295379	56295380	rs113710278	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	GNAO1	rs113710278-C	0.985466	5E-12		0.0545632	[0.039-0.07] unit decrease	Affymetrix [NR] (imputed)	N
1014	chr16	56295379	56295380	rs113710278	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	GNAO1	rs113710278-C	0.985461	2E-8		0.0462237	[0.03-0.062] unit decrease	Affymetrix [NR] (imputed)	N
1014	chr16	56298083	56298084	rs74523911	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q13	NR	rs74523911-T	0.03136	2E-9	(MAP4)	0.0134	NR unit increase	Illumina [1671387] (imputed)	N
1014	chr16	56319123	56319124	rs1809347	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	16q13		rs1809347-G	0.61473	7E-12		0.0489983	[0.035-0.063] increase	Affymetrix [NR]	N
1014	chr16	56328810	56328811	rs56143613	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q13	GNAO1	rs56143613-A		2E-9		0.282	unit increase	Affymetrix [at least 2696785] (imputed)	N
1014	chr16	56328812	56328813	rs62039274	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q13	GNAO1	rs62039274-T	0.4065	2E-8		0.1519	[0.099-0.205] mmHg decrease	Affymetrix [NR] (imputed)	N
1014	chr16	56330831	56330832	rs9937815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q13		rs9937815-G	NR	5E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1014	chr16	56340222	56340223	rs3790099	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSp classification)	3,608 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q13	GNAO1	rs3790099-?	NR	5E-8		1.1494253	NR	Illumina [~ 10156805] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q13		rs2398144-A	0.3947	2E-21		0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q13	NR	rs2398144-A	0.3947	5E-10		1.039	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16q13	NR	rs2398144-A	0.404282810501648	3E-11		0.0062181647	[0.0044-0.0081] unit increase	NR [NR]	N
1014	chr16	56352853	56352854	rs2398144	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	16q13	NR	rs2398144-A	0.404282810501648	6E-11		0.007554049	[0.0053-0.0098] unit increase	NR [NR]	N
1014	chr16	56352853	56352854	rs2398144	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	16q13	NR	rs2398144-A	0.404282810501648	2E-10		0.008013761	[0.0056-0.0105] unit increase	NR [NR]	N
1014	chr16	56352853	56352854	rs2398144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	16q13		rs2398144-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	16q13	NR	rs2398144-A	0.4065	1E-8		0.0108	[0.0071-0.0145] unit decrease	Illumina [NR] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	16q13	NR	rs2398144-A	0.3944	1E-8		0.0167	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	16q13	NR	rs2398144-A	0.4021	2E-8		0.0126	[0.0083-0.0169] unit increase	Illumina [NR] (imputed)	N
1014	chr16	56352853	56352854	rs2398144	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	16q13	NR	rs2398144-?	NR	6E-6				Illumina [7427422] (imputed)	N
1015	chr16	56361363	56361364	rs80322217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs80322217-A	NR	5E-11		0.0541	[0.038-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1015	chr16	56364029	56364030	rs4784655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16q13	NR	rs4784655-C	0.328435469119729	4E-11		0.01032878	[0.0073-0.0134] unit increase	NR [NR]	N
1015	chr16	56364029	56364030	rs4784655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16q13	NR	rs4784655-C	0.328435469119729	4E-11		0.0066019683	[0.0046-0.0086] unit increase	NR [NR]	N
1015	chr16	56367968	56367969	rs2550298	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q13	GNAO1	rs2550298-C	0.6189	6E-26		1.0384216		Affymetrix [11880941] (imputed)	N
1015	chr16	56367968	56367969	rs2550298	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q13	GNAO1	rs2550298-C	0.6189	6E-26		1.0408108		Affymetrix [11880941] (imputed)	N
1015	chr16	56373664	56373665	rs74785552	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	16q13	GNAO1	rs74785552-T	NR	8E-7		0.336	[0.2-0.47] unit decrease	Illumina [7410776] (imputed)	N
1015	chr16	56377907	56377908	rs116441240	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	16q13		rs116441240-T	NR	1E-7		2.75		Illumina [NR] (imputed)	N
1015	chr16	56377907	56377908	rs116441240	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	16q13		rs116441240-T	NR	1E-7		2.66		Illumina [NR] (imputed)	N
1015	chr16	56380569	56380570	rs3811360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs3811360-G	NR	7E-14		0.0296	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1015	chr16	56389887	56389888	rs575803453	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs575803453-C	0.987283	9E-15		0.143207	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
1015	chr16	56402543	56402544	rs2587865	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q13	GNAO1	rs2587865-?	NR	9E-6	(TAG 48:0)	0.5103376	[0.29-0.74] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	5E-12		0.122186	[0.087-0.157] unit decrease	NR [11722792] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	1E-14		0.137565	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	7E-10		0.108501	[0.074-0.143] unit increase	NR [11722792] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	6E-14		0.129182	[0.096-0.163] unit increase	NR [11722792] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	2E-11		0.121598	[0.086-0.157] unit increase	NR [11722792] (imputed)	N
1015	chr16	56418283	56418284	rs150911013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs150911013-T	0.986873	3E-8		0.100567	[0.065-0.136] unit increase	NR [11722792] (imputed)	N
1015	chr16	56420986	56420987	rs2432539	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q13		rs2432539-A	NR	3E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1015	chr16	56420986	56420987	rs2432539	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q13	AMFR	rs2432539-A	0.4	4E-8	(EA)	1.03	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1015	chr16	56432216	56432217	rs112233856	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	AMFR	rs112233856-A	0.971432	2E-10		0.0380831	[0.026-0.05] unit increase	Affymetrix [NR] (imputed)	N
1015	chr16	56448397	56448398	rs150646468	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	16q13	NR	rs150646468-C		3E-6		0.5804	[0.34-0.82] SD units increase	NR [10700000] (imputed)	N
1015	chr16	56459588	56459589	rs111283203	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q13	NR	rs111283203-G	0.7612	3E-8		0.0257	[0.016-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1015	chr16	56471409	56471410	rs7189122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q13	NR	rs7189122-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1015	chr16	56471409	56471410	rs7189122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q13		rs7189122-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1015	chr16	56471409	56471410	rs7189122	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q13	NA	rs7189122-T	0.8331	4E-11		0.0146	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1015	chr16	56481281	56481282	rs4784669	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q13	NR	rs4784669-A	0.41	4E-8		0.0101	[0.0064-0.0138] unit decrease	NR [NR]	N
1016	chr16	56511025	56511026	rs112162270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q13		rs112162270-G	NR	2E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1016	chr16	56525059	56525060	rs11640452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q13		rs11640452-A	NR	3E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1016	chr16	56531184	56531185	rs2303282	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q13	NR	rs2303282-G	0.6029	3E-7	(EA)	0.0323	[0.02-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1016	chr16	56542339	56542340	rs2161738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q13		rs2161738-G	NR	9E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1016	chr16	56564407	56564408	rs11642320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q13		rs11642320-G	NR	9E-9		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1016	chr16	56576068	56576069	rs16959558	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16q13	NR	rs16959558-C	0.178	5E-6	(IFNalpha_STAT1_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1016	chr16	56576352	56576353	rs78667306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs78667306-A	NR	1E-34		0.0765	[0.064-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1016	chr16	56576352	56576353	rs78667306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs78667306-A	NR	1E-20		0.0581	[0.046-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1016	chr16	56579960	56579961	rs75152587	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	MT4	rs75152587-G	0.987261	1E-28		0.0944212	[0.078-0.111] unit increase	Affymetrix [NR] (imputed)	N
1016	chr16	56579960	56579961	rs75152587	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	MT4	rs75152587-G	0.98724	1E-19		0.0797509	[0.063-0.097] unit increase	Affymetrix [NR] (imputed)	N
1016	chr16	56583041	56583042	rs282225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs282225-G	NR	5E-36		0.0592	[0.05-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1016	chr16	56583041	56583042	rs282225	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs282225-G	NR	8E-17		0.0395	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1016	chr16	56594859	56594860	rs139168126	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	16q13	MT4	rs139168126-G	NR	4E-6		0.8015107	[0.47-1.14] unit decrease	Illumina [> 6200000] (imputed)	N
1016	chr16	56595220	56595221	rs282229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs282229-G	NR	3E-17		0.0691	[0.053-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1016	chr16	56595220	56595221	rs282229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs282229-G	NR	4E-10		0.0512	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56635922	56635923	rs4784696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs4784696-C	NR	5E-10		0.0483	[0.033-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56649636	56649637	rs8055724	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q13	NR	rs8055724-?	NR	6E-37				Affymetrix [NR]	N
1017	chr16	56653744	56653745	rs7199256	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs7199256-T	NR	6E-16		0.0406	[0.031-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56653744	56653745	rs7199256	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs7199256-T	NR	8E-12		0.0345	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56679887	56679888	rs142493909	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	MT1A	rs142493909-T	0.98133	1E-21		0.0671377	[0.053-0.081] unit decrease	Affymetrix [NR] (imputed)	N
1017	chr16	56685915	56685916	rs149279319	33542107	Wan X	2021-02-04	J Am Soc Nephrol	Heterozygosity for a Pathogenic Variant in <i>SLC12A3</i> That Causes Autosomal Recessive Gitelman Syndrome Is Associated with Lower Serum Potassium.	Potassium levels	5,812 Old Order Amish (founder/genetic isolate) individuals	NA	16q13		rs149279319-?	NR	1E-9		0.1487	mmol/L decrease	Illumina [NR]	N
1017	chr16	56690911	56690912	rs62038694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs62038694-G	0.59473	3E-8		0.0219592	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1017	chr16	56690911	56690912	rs62038694	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs62038694-G	0.59473	5E-8		0.0217828	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-8		0.0785425	[0.051-0.106] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-13		0.100332	[0.073-0.127] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	1E-11		0.0947611	[0.067-0.122] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-13		0.100947	[0.074-0.128] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	5E-11		0.0927309	[0.065-0.12] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	8E-12		0.095578	[0.068-0.123] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs12447986-T	0.0180818	4E-12		0.0957938	[0.069-0.123] unit decrease	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	4E-10		0.0863881	[0.059-0.114] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-10		0.0907874	[0.063-0.119] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	3E-12		0.0953881	[0.069-0.122] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-11		0.093141	[0.066-0.12] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	9E-9		0.08095	[0.053-0.109] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	3E-13		0.100021	[0.073-0.127] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	5E-10		0.089858	[0.062-0.118] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	1E-12		0.0980007	[0.071-0.125] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	1E-11		0.0954402	[0.068-0.123] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	3E-10		0.0904567	[0.062-0.119] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	1E-12		0.0977255	[0.071-0.125] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	2E-12		0.097384	[0.07-0.125] unit increase	NR [11722792] (imputed)	N
1017	chr16	56695545	56695546	rs12447986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q13		rs12447986-T	0.0180777	5E-10		0.089148	[0.061-0.117] unit increase	NR [11722792] (imputed)	N
1017	chr16	56699966	56699967	rs3859113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs3859113-T	NR	1E-50		0.0754	[0.066-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1017	chr16	56699966	56699967	rs3859113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs3859113-T	NR	3E-32		0.0597	[0.05-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1017	chr16	56699966	56699967	rs3859113	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs3859113-?	NR	1E-11		0.009484	[0.0063-0.0126] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1017	chr16	56701797	56701798	rs72784737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs72784737-C	NR	2E-24		0.0941	[0.076-0.112] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56701797	56701798	rs72784737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs72784737-C	NR	2E-17		0.0788	[0.061-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56702882	56702883	rs55994220	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs55994220-?	NR	1E-11		0.01158	[0.0078-0.0154] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1017	chr16	56711374	56711375	rs4784709	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	MT1X	rs4784709-T	0.0408163	8E-36		0.0618129	[0.052-0.072] unit increase	Affymetrix [NR] (imputed)	N
1017	chr16	56721261	56721262	rs4783953	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs4783953-A	0.894438	8E-13		0.0458223	[0.033-0.058] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	2E-9		0.0217823	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	2E-8		0.0210436	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	3E-9		0.0217003	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	7E-10		0.0229598	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	1E-9		0.0225017	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	1E-8		0.0209137	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	9E-9		0.0212388	[0.014-0.028] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	3E-9		0.0216974	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	2E-9		0.0221861	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	6E-10		0.0231816	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	5E-8		0.0209664	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs8064100-A	0.579921	2E-9		0.0220252	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1017	chr16	56725172	56725173	rs8064100	22780124	Lind PA	2012-07-11	Addict Biol	Genome-wide association study of a quantitative disordered gambling trait.	Gambling	1,312 European ancestry twins from 894 families	NA	16q13	MT1X, MT11P, MT1H, MT1G, MT1B, NUP93, MT1F	rs8064100-A	0.582	3E-6		0.148	[0.087-0.209] unit decrease	Illumina [2373249] (imputed)	N
1017	chr16	56730517	56730518	rs7187278	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs7187278-?	NR	3E-10		0.005691	[0.0031-0.0083] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1017	chr16	56733115	56733116	rs79741827	29967566	Roberts CH	2018-06-03	Mediators Inflamm	Pathway-Wide Genetic Risks in Chlamydial Infections Overlap between Tissue Tropisms: A Genome-Wide Association Scan.	Anti-chlamydia trachomatis IgG seropositivity	71 Dutch ancestry cases, 169 Dutch ancestry controls	NA	16q13	MT1X	rs79741827-T	0.956	9E-7		1.6666665		Illumina [9443221] (imputed)	N
1017	chr16	56733969	56733969	rs71149690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs71149690-T	0.366576	8E-9		0.0250872	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1017	chr16	56733969	56733969	rs71149690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs71149690-T	0.366571	8E-11		0.0276381	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1017	chr16	56737278	56737279	rs7186642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs7186642-C	NR	4E-22		0.0249	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56737278	56737279	rs7186642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs7186642-C	NR	3E-13		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr16	56738783	56738784	rs78783870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs78783870-A	NR	1E-13		0.0368	[0.027-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1017	chr16	56739125	56739126	rs4538013	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs4538013-C	0.630673	1E-9		0.0261572	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1017	chr16	56740776	56740777	rs9936986	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs9936986-C	0.630717	1E-13		0.0318486	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1018	chr16	56772709	56772710	rs34056275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs34056275-G	0.998333	2E-12		0.366551	[0.26-0.47] unit increase	NR [11722792] (imputed)	N
1018	chr16	56772709	56772710	rs34056275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs34056275-G	0.998333	4E-8		0.282323	[0.18-0.38] unit increase	NR [11722792] (imputed)	N
1018	chr16	56789163	56789164	rs558727817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs558727817-G	0.989159	5E-10		0.119216	[0.082-0.157] unit increase	NR [11722792] (imputed)	N
1018	chr16	56789163	56789164	rs558727817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs558727817-G	0.98916	4E-8		0.117975	[0.076-0.16] unit increase	NR [11722792] (imputed)	N
1018	chr16	56801046	56801047	rs79616633	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	NUP93	rs79616633-C	0.977713	2E-8		0.0358494	[0.023-0.048] unit increase	Affymetrix [NR] (imputed)	N
1018	chr16	56803024	56803025	rs78087962	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	16q13		rs78087962-?	NR	2E-9		1.1865	[0.8-1.57] unit decrease	Affymetrix [NR] (imputed)	N
1018	chr16	56803198	56803199	rs78291913	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	16q13		rs78291913-C	0.99	1E-9		0.143	[0.096-0.19] unit decrease	Affymetrix [8918919] (imputed)	N
1018	chr16	56803705	56803706	rs76729986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs76729986-C	NR	8E-79		0.0549	[0.049-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1018	chr16	56803705	56803706	rs76729986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs76729986-C	NR	1E-52		0.0447	[0.039-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1018	chr16	56825665	56825666	rs10852553	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs10852553-G	NR	2E-26		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1018	chr16	56825665	56825666	rs10852553	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs10852553-G	0.839	7E-28	(EA)	0.056	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1018	chr16	56829421	56829422	rs118070237	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	16q13	NUP93	rs118070237-?	NR	1E-10		0.0877	[0.061-0.114] unit decrease novel	Illumina [6108953] (imputed)	N
1018	chr16	56834233	56834234	rs79984435	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	NUP93	rs79984435-G	0.907798	4E-142		0.0856304	[0.079-0.092] unit increase	Affymetrix [NR] (imputed)	N
1018	chr16	56834253	56834254	rs79600951	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	NUP93	rs79600951-C	0.907943	2E-235		0.106785	[0.1-0.11] unit increase	Affymetrix [NR] (imputed)	N
1018	chr16	56834253	56834254	rs79600951	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q13	NR	rs79600951-G	0.0970784	4E-14		0.14015938	[0.1-0.18] mg/dl decrease	Illumina [24111857] (imputed)	N
1018	chr16	56846803	56846804	rs16962399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs16962399-C	NR	7E-32		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1018	chr16	56846803	56846804	rs16962399	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs16962399-C	0.909	2E-32	(EA)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
1018	chr16	56849113	56849114	rs77780456	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	NR	rs77780456-?	NR	6E-39		0.17	[0.14-0.2] unit increase novel	Illumina [6108953] (imputed)	N
1018	chr16	56852821	56852822	rs1561139	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q13	NUP93	rs1561139-G	0.575666	5E-10		0.0130731	[0.0089-0.0172] unit increase	Affymetrix [NR] (imputed)	N
1018	chr16	56856571	56856572	rs76976871	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs76976871-?	NR	2E-22		0.01228	[0.0098-0.0148] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1018	chr16	56859896	56859897	rs74765290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs74765290-G	NR	1E-61		0.0923	[0.081-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1018	chr16	56859896	56859897	rs74765290	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs74765290-G	NR	3E-42		0.0763	[0.065-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1018	chr16	56861542	56861543	rs79382425	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	16q13		rs79382425-?	NR	1E-9		1.2116	[0.82-1.6] unit decrease	Affymetrix [NR] (imputed)	N
1018	chr16	56873813	56873814	rs72786737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs72786737-G	NR	2E-9		0.0427	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1018	chr16	56880841	56880842	rs6499854	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	16q13	NR	rs6499854-?	NR	7E-6	(EA)			Illumina [1735619]	N
1019	chr16	56892817	56892818	rs117254618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117254618-G	NR	7E-26		0.0968	[0.079-0.115] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56892817	56892818	rs117254618	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs117254618-G	NR	5E-15		0.0724	[0.054-0.09] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56897258	56897259	rs8051191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs8051191-G	NR	8E-43		0.0442	[0.038-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56897258	56897259	rs8051191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs8051191-G	NR	3E-28		0.0356	[0.029-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56905685	56905686	rs11646723	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q13	NR	rs11646723-T	0.0578	4E-6	(EA)	0.0718	[0.041-0.102] unit increase	Illumina [~ 11800000] (imputed)	N
1019	chr16	56906567	56906568	rs142679083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs142679083-T	NR	4E-14		0.1701	[0.13-0.21] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56906567	56906568	rs142679083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs142679083-T	NR	2E-9		0.1356	[0.091-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56908044	56908045	rs13330096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q13	NR	rs13330096-T	NR	1E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56908044	56908045	rs13330096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs13330096-T	NR	3E-135		0.076	[0.07-0.082] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56908044	56908045	rs13330096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs13330096-T	NR	3E-78		0.0577	[0.052-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56908883	56908884	rs11640954	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs11640954-?	NR	2E-28		0.01441	[0.012-0.017] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56909321	56909322	rs34136389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs34136389-G	NR	8E-40		0.037	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56909321	56909322	rs34136389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs34136389-G	NR	7E-30		0.0319	[0.026-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56914454	56914455	rs148931404	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (2df)	67,544 European ancestry individuals	7,284 European ancestry individuals	16q13	SLC12A3	rs148931404-A	0.0226	5E-91				Affymetrix [7954107] (imputed)	N
1019	chr16	56914454	56914455	rs148931404	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (1df)	67,544 European ancestry individuals	7,284 European ancestry individuals	16q13	SLC12A3	rs148931404-A	0.0226	2E-16		0.7734	[0.68-0.87] unit increase	Affymetrix [7954107] (imputed)	N
1019	chr16	56916944	56916945	rs8043560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs8043560-T	NR	6E-15		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56916944	56916945	rs8043560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs8043560-T	NR	1E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56918124	56918125	rs35797045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs35797045-A	NR	3E-89		0.1195	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56918124	56918125	rs35797045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs35797045-A	NR	7E-61		0.0986	[0.087-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	2E-8		0.240276	[0.16-0.32] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	1E-10		0.278203	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	2E-10		0.277831	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	2E-11		0.27625	[0.2-0.36] unit increase	NR [11722792] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	2E-8		0.242785	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
1019	chr16	56925220	56925221	rs189666239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs189666239-C	0.997673	5E-8		0.233112	[0.15-0.32] unit increase	NR [11722792] (imputed)	N
1019	chr16	56929019	56929020	rs12446275	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12446275-G	NR	3E-31		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56929019	56929020	rs12446275	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12446275-G	0.874	8E-29	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56930250	56930251	rs8063291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs8063291-C	NR	2E-63		0.0557	[0.049-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56930250	56930251	rs8063291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs8063291-C	NR	2E-41		0.0448	[0.038-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56932164	56932165	rs377719564	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	16q13		rs377719564-T	0.014435	7E-7		2.328831	NR	Affymetrix [7846216] (imputed)	N
1019	chr16	56939439	56939440	rs140274734	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs140274734-T	0.99719	4E-8		0.209893	[0.13-0.28] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56939439	56939440	rs140274734	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs140274734-T	0.99719	1E-8		0.22109	[0.14-0.3] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56942920	56942921	rs1138429	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs1138429-?	NR	1E-45		0.0254	[0.022-0.029] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56942920	56942921	rs1138429	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs1138429-?	NR	4E-46		0.02338	[0.02-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56946580	56946581	rs3794647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs3794647-A	NR	7E-38		0.0321	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56946580	56946581	rs3794647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs3794647-A	NR	3E-23		0.0248	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56950209	56950210	rs9925265	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	16q13	NR	rs9925265-?		3E-6				Illumina [up to 6969139] (imputed)	N
1019	chr16	56950209	56950210	rs9925265	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	16q13	SLC12A3	rs9925265-G	0.53658	5E-7		0.148498	[0.091-0.206] unit increase	Illumina [6969139] (imputed)	N
1019	chr16	56950209	56950210	rs9925265	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	16q13	Intergenic	rs9925265-G	0.53658	5E-6		0.139833	[0.08-0.2] unit increase	Illumina [6969139] (imputed)	N
1019	chr16	56956753	56956753	rs140503854	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q13		rs140503854-AGAACAGGGAAGCCC	NR	2E-8		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1019	chr16	56969147	56969148	rs2217332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs2217332-A	NR	4E-147		0.0924	[0.085-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56969147	56969148	rs2217332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs2217332-A	NR	1E-95		0.0744	[0.067-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56969147	56969148	rs2217332	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16q13	HERPUD1	rs2217332-?	0.19	3E-6	(HDL)			Illumina [308011]	N
1019	chr16	56978147	56978148	rs11864751	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q13	HERPUD1	rs11864751-T	NR	3E-8		0.0176517	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1019	chr16	56980552	56980553	rs146957515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs146957515-C	0.997697	4E-8		0.22358	[0.14-0.3] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56980552	56980553	rs146957515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs146957515-C	0.997697	6E-9		0.248529	[0.16-0.33] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56984481	56984482	rs12444708	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs12444708-?	NR	4E-40		0.02247	[0.019-0.026] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56984481	56984482	rs12444708	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs12444708-?	NR	1E-45		0.0218	[0.018-0.025] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56984589	56984590	rs9938160	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs9938160-?	NR	3E-37		0.01543	[0.013-0.018] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56984589	56984590	rs9938160	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs9938160-?	NR	4E-37		0.01481	[0.012-0.017] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	CETP	rs9989419-A	0.39408	1E-1211		0.143745	[0.14-0.15] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	CETP	rs9989419-A	0.394487	6E-724		0.11499	[0.11-0.12] unit decrease	Affymetrix [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	16q13		rs9989419-A	0.39	2E-39		2.04	[1.73-2.35] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs9989419-?	NR	7E-15		0.8957224	[0.67-1.12] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	16q13		rs9989419-A	0.3889	8E-133	(EA)	0.0321	[0.03-0.035] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	16q13	CETP	rs9989419-A	0.39	4E-11	(Indian)	1.51	[1.06-1.96] unit decrease	Illumina [551825]	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	5E-10				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	8E-8		0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-6	(EA)	0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	6E-15				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-18	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	5E-7	(EA)	1.408	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-6		0.868	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	8E-216	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	6E-299				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-23	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-20	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	6E-162				Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	5E-23	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	3E-225	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-32	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	5E-207	(EA)	0.038	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-20	(Hispanic)	0.029	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-12	(Asian)	0.014	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	1E-172		0.027	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	7E-20	(Asian)	0.01925	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	5E-126	(EA)	0.03968	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	4E-12	(HIspanic)	0.02685	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q13	HERPUD1, CETP	rs9989419-G	NR	2E-118		0.02612	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	NR	2E-8		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	0.393	5E-8	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	NR	4E-17		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	0.393	1E-14	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	NR	1E-266		0.122	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	0.393	4E-251	(EA)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	0.364	2E-17	(Hispanic)	0.108	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9989419-A	0.27	1E-8	(East Asian)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	16q13	CETP	rs9989419-A	0.42	5E-11	(HDL-C)	6.57	unit decrease	Affymetrix [390619]	N
1019	chr16	56985138	56985139	rs9989419	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	16q13	CETP	rs9989419-G	0.60	1E-32		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	20031538	Heid IM	2008-10-01	Circ Cardiovasc Genet	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	16q13	CETP	rs9989419-A	0.38	9E-27		2.66	[NR] mg/dl decrease	Affymetrix [up to 2557253] (imputed)	N
1019	chr16	56985138	56985139	rs9989419	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	CETP	rs9989419-G	0.65	3E-31		1.72	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs72786786-G	0.687705	3E-387		0.189813	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	6E-335		0.166733	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	5E-337		0.159821	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	6E-514		0.1923	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	7E-402		0.174152	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	2E-501		0.190415	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	3E-348		0.163101	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	1E-491		0.191724	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs72786786-G	0.687709	5E-508		0.193115	[0.19-0.2] unit increase	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	3E-498		0.191419	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs72786786-G	0.687705	3E-395		0.19075	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	4E-361		0.167305	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	9E-486		0.18685	[0.18-0.19] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	4E-442		0.180223	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	1E-362		0.165999	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	5E-530		0.195003	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	7E-402		0.173995	[0.17-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	3E-359		0.169536	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	1E-539		0.198471	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	2E-494		0.193278	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	2E-339		0.169613	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	5E-326		0.164319	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	3E-351		0.163817	[0.16-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	1E-363		0.1699	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	3E-531		0.196383	[0.19-0.2] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	2E-447		0.181231	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q13		rs72786786-G	0.687699	1E-325		0.159817	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985513	56985514	rs72786786	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	16q13	NR	rs72786786-A	0.3106	1E-500	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1019	chr16	56985554	56985555	rs12448528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q13		rs12448528-A	0.219374	1E-11		0.0327669	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985554	56985555	rs12448528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs12448528-A	0.219374	2E-11		0.0328235	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56985554	56985555	rs12448528	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs12448528-?	NR	1E-148		0.03015	[0.028-0.033] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56985554	56985555	rs12448528	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs12448528-?	NR	2E-140		0.02997	[0.027-0.032] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	1E-360		0.171694	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	6E-109		0.098131	[0.089-0.107] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	6E-385		0.176038	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs12446515-C	0.6768	8E-378		0.178329	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	6E-405		0.171055	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	9E-372		0.167804	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	5E-395		0.185287	[0.18-0.19] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	4E-155		0.1174	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	1E-57		0.0705666	[0.062-0.079] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	6E-361		0.170913	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	1E-106		0.0973999	[0.089-0.106] unit increase	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	16q13		rs12446515-C	0.676792	2E-34		0.0528408	[0.044-0.061] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q13		rs12446515-T	NR	8E-58		0.0357	[0.031-0.04] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q13	CETP	rs12446515-C	0.677112	4E-55		0.0334693	[0.029-0.038] unit increase	Affymetrix [NR] (imputed)	N
1019	chr16	56987014	56987015	rs12446515	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q13	CETP	rs12446515-T	0.166	9E-11		5.2555	[3.67-6.84] unit increase	Affymetrix [at least 805769] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16q13		rs56156922-T	0.67568	2E-10		0.0269447	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	16q13		rs56156922-T	0.67568	4E-16		0.034575	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	16q13		rs56156922-C	0.212152	2E-13		0.036558	[0.027-0.046] unit decrease	Illumina [13471903] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q13		rs56156922-C	NR	5E-94		0.0445	[0.04-0.049] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	16q13		rs56156922-C	0.211557	2E-34		0.0540294	[0.045-0.063] unit increase	Illumina [13476599] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	16q13		rs56156922-C	0.214063	2E-374		0.239228	[0.23-0.25] unit increase	Illumina [13465896] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q13		rs56156922-C	NR	7E-2393		0.2327	[0.23-0.24] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?		3E-16		0.0346	[0.026-0.043] unit decrease	Illumina [31500000] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?		3E-35		0.05	[0.042-0.058] unit increase	Illumina [31500000] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?		6E-14		0.0354	[0.026-0.045] unit decrease	Illumina [31500000] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?		2E-705		0.2751	[0.27-0.28] unit increase	Illumina [31500000] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16q13	HERPUD1, CETP	rs56156922-?		3E-19	(EA)	0.23222724	[0.18-0.28] unit increase	Illumina [13620258] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,431 Japanese ancestry women	3,109 Japanese ancestry women	16q13	CETP	rs56156922-T	0.7914	3E-46		0.0729	[0.063-0.083] unit decrease	Illumina [7094228] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	31694877	Nishida Y	2019-11-06	J Lipid Res	The interaction between ABCA1 polymorphism and physical activity on the HDL-cholesterol levels in a Japanese population.	HDL cholesterol levels	2,231 Japanese ancestry men	2,599 Japanese ancestry men	16q13	CETP	rs56156922-T	0.7874	4E-49		0.0844	[0.073-0.096] unit decrease	Illumina [7094228] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs56156922-?	NR	1E-9		2.52138	[1.71-3.33] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs56156922-?	NR	1E-117		3.039497	[2.78-3.3] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	NR	7E-19		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.685	5E-18	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	NR	3E-28		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.709	3E-6	(Hispanic)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.685	2E-20	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	NR	2E-9		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.685	2E-10	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	NR	1E-300		0.216	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.831	7E-9	(AA)	0.167	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.821	9E-48	(East Asian)	0.258	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.709	5E-61	(Hispanic)	0.226	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs56156922-T	0.685	1E-300	(EA)	0.214	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?	NR	1E-12		0.03734	[0.027-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?	NR	2E-32		0.05698	[0.048-0.066] unit increase novel	Illumina [6108953] (imputed)	N
1019	chr16	56987368	56987369	rs56156922	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	HERPUD1, CETP	rs56156922-?	NR	2E-300		0.2656	[0.25-0.28] unit increase novel	Illumina [6108953] (imputed)	N
1019	chr16	56987764	56987765	rs56228609	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q13	CETP, HERPUD1	rs56228609-T	0.303	3E-8		0.039	[0.025-0.053] unit decrease	Affymetrix [7947838] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	9E-15		0.0331398	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	3E-8		0.0242127	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	1E-19		0.0398384	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	2E-17		0.0369948	[0.028-0.046] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	4E-22		0.0424648	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	4E-12		0.0301308	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	3E-12		0.0305395	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	7E-15		0.0339774	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	9E-24		0.0439813	[0.035-0.053] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	2E-11		0.0294153	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	1E-21		0.0419083	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	2E-25		0.045663	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	4E-14		0.0331918	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	16q13		rs173539-C	0.668706	3E-19		0.0393894	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	1E-11		0.0808094	[0.057-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	9E-12		0.0845413	[0.06-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	1E-13		0.0919384	[0.068-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	2E-11		0.0853217	[0.06-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	2E-10		0.0770148	[0.053-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	5E-11		0.0825162	[0.058-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs173539-T	NR	3E-11		0.075187	[0.053-0.097] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56988043	56988044	rs173539	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs173539-?	NR	6E-9		2.119357	[1.4-2.83] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56988043	56988044	rs173539	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs173539-?	NR	6E-102		2.538769	[2.31-2.77] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	NR	8E-19		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.681	9E-18	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	NR	7E-25		0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.69	2E-6	(Hispanic)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.681	4E-20	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	NR	1E-10		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.681	8E-11	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	NR	1E-300		0.208	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.763	4E-26	(East Asian)	0.168	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.69	1E-62	(Hispanic)	0.222	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.681	1E-300	(EA)	0.213	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs173539-C	0.643	2E-8	(AA)	0.126	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56988043	56988044	rs173539	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	16q13	CETP	rs173539-?	0.28	3E-70				Illumina [~ 2000000] (imputed)	N
1019	chr16	56988043	56988044	rs173539	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	16q13	CETP	rs173539-T	0.32	3E-65	(HDL)	0.255	[0.23-0.28] mmol/l increase	Illumina [NR] (imputed)	N
1019	chr16	56988043	56988044	rs173539	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	CETP	rs173539-C	NR	1E-16	(HDLC-WC)	0.29	[0.23-0.35] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1019	chr16	56988043	56988044	rs173539	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome	22,161 European ancestry individuals	NA	16q13	CETP	rs173539-C	NR	9E-9		0.16	[0.10-0.22] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1019	chr16	56988043	56988044	rs173539	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	16q13	CETP	rs173539-C	NR	5E-16		0.26	[0.20-0.32] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1019	chr16	56988043	56988044	rs173539	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	16q13	CETP	rs173539-T	0.32	4E-75		0.25	[0.21-0.29] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-35		0.054649	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	5E-324		0.158935	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	7E-44		0.0608862	[0.052-0.069] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-75		0.0779349	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	9E-72		0.0787511	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	2E-52		0.0670847	[0.058-0.076] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-71		0.0789067	[0.07-0.088] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	3E-51		0.0664348	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	4E-34		0.053814	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-51		0.0665462	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-40		0.0590062	[0.05-0.068] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	5E-64		0.0718841	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	1E-38		0.0568764	[0.048-0.065] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	5E-71		0.0762254	[0.068-0.085] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	2E-46		0.062973	[0.054-0.072] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	16q13		rs247616-C	0.675301	4E-37		0.0561441	[0.048-0.065] unit increase	NR [11722792] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	2E-10		0.0787446	[0.054-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	3E-13		0.0873669	[0.064-0.111] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	4E-11		0.0824802	[0.058-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	2E-13		0.0913022	[0.067-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	6E-13		0.092338	[0.067-0.117] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	4E-12		0.0841899	[0.06-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	1E-12		0.0900759	[0.065-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	4E-12		0.0791988	[0.057-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	3E-11		0.059066	[0.042-0.076] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	1E-11		0.0564172	[0.04-0.073] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247616-T	NR	7E-11		0.0666407	[0.047-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56989589	56989590	rs247616	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		16q13	CETP	rs247616-C	NR	1E-46		0.024858	[0.021-0.029] nmol/l increase	NR [19000000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	2,253 Korean ancestry cases and controls	NA	16q13	HERPUD1, CETP	rs247616-?	0.823	8E-6		1.7035774	[1.35-2.16]	Affymetrix [at least 584061] (imputed)	N
1019	chr16	56989589	56989590	rs247616	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	16q13	NR	rs247616-?	NR	1E-41		0.139	[0.12-0.16] unit increase	Illumina [1770809] (imputed)	N
1019	chr16	56989589	56989590	rs247616	31087446	Han S	2019-05-13	Genet Epidemiol	Exome chip-driven association study of lipidemia in >14,000 Koreans and evaluation of genetic effect on identified variants between different ethnic groups.	Hypo-HDL-cholesterolemia	13,890 Korean ancestry individuals	NA	16q13	HERPUD1, CETP	rs247616-?		2E-28	(KARE)	11.077	unit decrease	Illumina [240075]	N
1019	chr16	56989589	56989590	rs247616	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (cAMP stimulated assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	16q13	CETP	rs247616-C	0.686	4E-10		0.1308	[0.090-0.172] unit decrease	Illumina [at least 9000000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	16q13	CETP	rs247616-C	0.686	4E-12		0.1466	[0.11-0.19] unit decrease	Illumina [at least 9000000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q13	intergenic	rs247616-T	0.3071	3E-19		0.0255	[0.02-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29728394	Blauw LL	2018-05-01	Circ Genom Precis Med	CETP (Cholesteryl Ester Transfer Protein) Concentration: A Genome-Wide Association Study Followed by Mendelian Randomization on Coronary Artery Disease.	Cholesteryl ester transfer protein levels	4248 individuals	1458 individuals	16q13	CETP	rs247616-C	0.67	4E-100		0.32	[0.29-0.35] ug/mL increase	Illumina [NR] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	NR	5E-20		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.684	1E-18	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	NR	5E-30		0.053	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.7	4E-7	(Hispanic)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.684	2E-21	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	NR	2E-9		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.684	2E-10	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	NR	1E-300		0.219	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.826	2E-46	(East Asian)	0.249	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.741	2E-20	(AA)	0.229	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.7	2E-67	(Hispanic)	0.234	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247616-C	0.684	1E-300	(EA)	0.215	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56989589	56989590	rs247616	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	16q13	CETP	rs247616-C	0.678	1E-6		1.04	[1.03-1.06]	Affymetrix [9149595] (imputed)	N
1019	chr16	56989589	56989590	rs247616	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	16q13	CETP	rs247616-T	0.293	1E-33	(Trans-ethnic initial)	0.0547	[0.047-0.063] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	27587472	Postmus I	2016-09-01	J Med Genet	Meta-analysis of genome-wide association studies of HDL cholesterol response to statins.	Response to statins (HDL cholesterol change)	16,769 European ancestry individuals	10,951 European ancestry individuals	16q13	CETP	rs247616-T	0.326	9E-13		0.0071	[0.0090-0.0130] unit increase	Affymetrix, Illumina, Perlegen [up to 2500000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	HDL cholesterol	3,681 individuals	NA	16q13	CETP	rs247616-A	0.31	2E-23		0.057	[0.046-0.068] unit increase	Illumina [101597]	N
1019	chr16	56989589	56989590	rs247616	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q13	CETP	rs247616-T	0.32	1E-11	(X-11550)	0.01	[0.008-0.012] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q13	HERPUD1	rs247616-?	NR	4E-6	(PC 34:3)	0.17229323	[0.099-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
1019	chr16	56989589	56989590	rs247616	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	16q13	CETP	rs247616-T	0.32	3E-8	(Mass concentrations)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [2661766] (imputed)	N
1019	chr16	56989589	56989590	rs247616	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors	525 European ancestry individuals	2,442 Finnish ancestry individuals	16q13	CETP, HERPUD1	rs247616-T	NR	1E-23	(HDL-cholesterol)	2.99	[2.42-3.56] unit increase	Illumina [2173391] (imputed)	N
1019	chr16	56990715	56990716	rs247617	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	16q13		rs247617-C	0.676382	1E-31		0.0507509	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	16q13		rs247617-A	0.332545696	2E-16		0.192403	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium HDL	4,348 individuals	NA	16q13		rs247617-A	0.330243156	2E-10		0.146173	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	9E-9		0.136007	[0.09-0.182] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	16q13		rs247617-A	0.332545696	1E-16		0.193986	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	8E-12		0.16172	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large HDL	4,348 individuals	NA	16q13		rs247617-A	0.332545696	4E-18		0.203006	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	1E-12		0.168396	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL3	4,348 individuals	NA	16q13		rs247617-A	0.330282199	8E-14		0.171255	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL2	4,348 individuals	NA	16q13		rs247617-A	0.330424151	1E-16		0.189568	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL	4,348 individuals	NA	16q13		rs247617-A	0.330282199	1E-16		0.189563	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	16q13		rs247617-A	0.332545696	4E-14		0.176827	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	1E-10		0.151556	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	16q13		rs247617-A	0.330282199	1E-17		0.195739	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large HDL particle concentration	4,348 individuals	NA	16q13		rs247617-A	0.334911714	1E-11		0.161029	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	16q13		rs247617-A	0.332545696	7E-19		0.207757	[0.16-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	7E-12		0.162226	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large HDL	4,348 individuals	NA	16q13		rs247617-A	0.332545696	2E-17		0.199062	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large HDL	4,348 individuals	NA	16q13		rs247617-A	0.334911714	5E-13		0.170493	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein A-I	4,348 individuals	NA	16q13		rs247617-A	0.330282199	1E-16		0.18984	[0.15-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	16q13		rs247617-A	0.335678977	3E-15		0.175458	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small HDL	4,734 individuals	NA	16q13		rs247617-A	0.332324158	6E-9		0.127651	[0.085-0.171] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium HDL	4,734 individuals	NA	16q13		rs247617-A	0.332570369	1E-9		0.134196	[0.091-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	16q13		rs247617-A	0.335678977	1E-15		0.177127	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	16q13		rs247617-A	0.335678977	2E-17		0.188105	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	16q13		rs247617-A	0.331937169	5E-8		0.120039	[0.077-0.163] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	16q13		rs247617-A	0.336183606	2E-14		0.170849	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL2	4,734 individuals	NA	16q13		rs247617-A	0.332287985	3E-16		0.179679	[0.14-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	16q13		rs247617-A	0.332185678	8E-16		0.176436	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	16q13		rs247617-A	0.332185678	5E-20		0.200706	[0.16-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	16q13		rs247617-A	0.335678977	5E-18		0.191747	[0.15-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	16q13		rs247617-A	0.336183606	7E-14		0.167423	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	16q13		rs247617-A	0.335678977	8E-17		0.184799	[0.14-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	16q13		rs247617-A	0.331937169	2E-9		0.132608	[0.09-0.176] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	16q13		rs247617-A	0.336183606	1E-14		0.172038	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein A-I	4,734 individuals	NA	16q13		rs247617-A	0.332185678	6E-15		0.171197	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	16q13		rs247617-A	NR	2E-41		0.0312	[0.027-0.036] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	9E-11		0.080185	[0.056-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	8E-13		0.0859655	[0.062-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	2E-11		0.0837227	[0.059-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	2E-13		0.091978	[0.068-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	1E-12		0.0912931	[0.066-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	6E-12		0.0835296	[0.06-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	9E-13		0.090454	[0.066-0.115] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	3E-12		0.0797258	[0.057-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	3E-11		0.0592773	[0.042-0.077] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	2E-11		0.0559305	[0.04-0.072] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs247617-A	NR	9E-11		0.0664505	[0.046-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56990715	56990716	rs247617	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q13	HERPUD1, CETP	rs247617-C	0.704152	4E-11	(1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)*)	0.16	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
1019	chr16	56990715	56990716	rs247617	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16q13	HERPUD1, CETP	rs247617-C	0.704152	4E-11	(1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0)*)	0.16	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
1019	chr16	56990715	56990716	rs247617	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16q13	CETP	rs247617-A	0.324218	2E-166		0.196432	[0.18-0.21] unit decrease	Affymetrix [9463307] (imputed)	N
1019	chr16	56990715	56990716	rs247617	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	16q13	NR	rs247617-?	NR	2E-6		0.02120415	[0.012-0.03] unit decrease	Illumina [31978265] (imputed)	N
1019	chr16	56990715	56990716	rs247617	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs247617-?	NR	5E-11		2.534521	[1.78-3.29] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56990715	56990716	rs247617	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs247617-?	NR	3E-175		3.496861	[3.25-3.74] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56990715	56990716	rs247617	30263045	Blackburn NB	2018-09-17	BMC Proc	Heritability and genetic associations of triglyceride and HDL-C levels using pedigree-based and empirical kinships.	Response to fenofibrate (HDL cholesterol levels)	817 individuals	NA	16q13	CETP	rs247617-?	NR	2E-9		0.332	[0.22-0.44] unit increase	NR [718407]	N
1019	chr16	56990715	56990716	rs247617	30263045	Blackburn NB	2018-09-17	BMC Proc	Heritability and genetic associations of triglyceride and HDL-C levels using pedigree-based and empirical kinships.	High density lipoprotein cholesterol levels	817 individuals	NA	16q13	CETP	rs247617-?	NR	1E-8		0.315	[0.21-0.42] unit increase	NR [718407]	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	NR	2E-20		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.683	8E-19	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	NR	5E-30		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.701	3E-7	(Hispanic)	0.083	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.683	2E-21	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	NR	1E-9		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.683	2E-10	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	NR	1E-300		0.218	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.828	4E-48	(East Asian)	0.256	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.741	8E-20	(AA)	0.225	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.701	3E-68	(Hispanic)	0.235	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs247617-C	0.683	1E-300	(EA)	0.215	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56990715	56990716	rs247617	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	16q13	NR	rs247617-?	NR	1E-149				Affymetrix [NR]	N
1019	chr16	56990715	56990716	rs247617	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	16q13	NR	rs247617-?	NR	4E-165				Affymetrix [NR]	N
1019	chr16	56990715	56990716	rs247617	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16q13	CETP	rs247617-A	0.3	6E-97	(Total cholesterol in HDL)	0.23	[0.21-0.25] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1019	chr16	56990715	56990716	rs247617	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	16q13	CETP	rs247617-C	0.69	2E-24		0.069	[0.055-0.083] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1019	chr16	56990715	56990716	rs247617	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	16q13	CETP	rs247617-C	0.298	3E-16	(Hispanic)	0.0509	[NR] unit increase	Affymetrix [NR]	N
1019	chr16	56990715	56990716	rs247617	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	16q13	CETP	rs247617-A	0.262	1E-44	(AA)	0.0619	[NR] unit increase	Affymetrix [NR]	N
1019	chr16	56990715	56990716	rs247617	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	16q13	CETP	rs247617-C	0.72	9E-60	(HDL)	0.25	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	2E-12		0.0293947	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs183130-C	0.676628	6E-115		0.0973838	[0.089-0.106] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	4E-81		0.0811535	[0.073-0.089] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	6E-20		0.0380823	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	2E-31		0.0503657	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	4E-38		0.055487	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	3E-301		0.163157	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	7E-30		0.0497532	[0.041-0.058] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs183130-C	0.676628	6E-59		0.0692196	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	3E-272		0.147227	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	3E-30		0.048047	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	3E-67		0.0757042	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs183130-C	0.676628	5E-46		0.0601833	[0.052-0.068] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs183130-C	0.675978	1E-144		0.108106	[0.1-0.116] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q13		rs183130-C	0.676027	8E-110		0.0990191	[0.09-0.108] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs183130-C	0.676628	2E-51		0.0637141	[0.055-0.072] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	5E-159		0.115012	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs183130-C	0.67597	2E-10		0.0265794	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs183130-C	0.675978	7E-273		0.152037	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1019	chr16	56991362	56991363	rs183130	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16q13	HERPUD1, CETP	rs183130-?		3E-17	(African American)	0.23224984	[0.18-0.29] unit increase	Illumina [13620258] (imputed)	N
1019	chr16	56991362	56991363	rs183130	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q13		rs183130-?	NR	2E-175		0.243	[0.23-0.26] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56991362	56991363	rs183130	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q13	CNGB1	rs183130-?	NR	8E-59		0.0443	[0.039-0.049] unit decrease	Affymetrix [5701386] (imputed)	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	9E-22	(HDL_TG)	0.08004148	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	8E-14	(M_VLDL_C)	0.065709785	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-27	(S_VLDL_CE)	0.11906177	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-22	(L_HDL_FC)	0.12088676	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-19	(HDL2_C)	0.130026	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-17	(XL_HDL_PL)	0.08501582	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	6E-13	(IDL_L)	0.058755904	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-37	(ApoA1)	0.101543605	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-26	(XS_VLDL_C)	0.08579078	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-15	(XL_HDL_L)	0.105479166	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-15	(XL_HDL_FC)	0.0961749	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-15	(M_HDL_C)	0.09027502	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-13	(TotPG)	0.038260072	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-23	(VLDL_C)	0.08824907	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-21	(L_HDL_PL)	0.11083236	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-19	(L_HDL_P)	0.1107522	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-12	(IDL_PL)	0.054003127	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-27	(ApoB)	0.054636244	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-16	(ApoB_ApoA1)	0.12017143	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-24	(XS_VLDL_CE)	0.072538346	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-23	(XL_HDL_P)	0.09626726	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-20	(L_HDL_C)	0.11689494	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-17	(S_VLDL_FC)	0.08816498	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-16	(M_HDL_CE)	0.09645192	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-26	(XS_VLDL_L)	0.089008324	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-20	(XS_VLDL_P)	0.08183523	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-16	(S_VLDL_L)	0.095659755	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-16	(HDL_D)	0.09556544	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-12	(XL_HDL_CE)	0.090392776	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-12	(M_VLDL_CE)	0.09298877	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-10	(XXL_VLDL_CE)	0.091909856	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	9E-13	(XL_HDL_L)	0.104724005	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	8E-19	(L_HDL_PL)	0.10980227	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	8E-15	(XL_HDL_P)	0.09501993	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	8E-11	(M_HDL_C)	0.095909804	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-19	(HDL2_C)	0.130026	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-15	(HDL_D)	0.09606246	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	7E-11	(M_VLDL_CE)	0.09538912	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	6E-12	(VLDL_C)	0.10092257	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	5E-12	(M_HDL_CE)	0.10189734	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-19	(L_HDL_P)	0.1107522	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	4E-10	(XXL_VLDL_CE)	0.09248715	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-17	(L_HDL_C)	0.12404425	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-16	(ApoB_ApoA1)	0.12017143	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-13	(XL_HDL_PL)	0.0897876	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-13	(HDL_TG)	0.09181996	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-12	(XS_VLDL_P)	0.08534654	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	3E-12	(XS_VLDL_CE)	0.1026798	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-16	(S_VLDL_CE)	0.12172188	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-16	(L_HDL_FC)	0.120419666	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-11	(XS_VLDL_L)	0.099437594	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-11	(XS_VLDL_C)	0.09897173	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-11	(XL_HDL_FC)	0.09865089	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-10	(S_VLDL_L)	0.09367091	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	2E-10	(S_VLDL_FC)	0.09414467	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-7	(M_VLDL_C)	0.077550486	NR unit decrease	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-19	(ApoA1)	0.11089493	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs183130-?	NR	1E-10	(XL_HDL_CE)	0.0940023	NR unit increase	Illumina [609262]	N
1019	chr16	56991362	56991363	rs183130	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	High density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	16q13		rs183130-C	0.32	1E-6		0.42	[0.33-0.57] unit decrease	Illumina [19468843] (imputed)	N
1019	chr16	56991362	56991363	rs183130	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q13	intergenic	rs183130-T	0.3073	1E-84		0.0549	[0.049-0.06] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1019	chr16	56991362	56991363	rs183130	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	HDL cholesterol	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	188,577 European and other ancestry individuals	16q13	CETP	rs183130-?	NR	1E-6	(Yoruban)			Illumina [4454201] (imputed)	N
1019	chr16	56991523	56991524	rs6499862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs6499862-A	NR	8E-187		0.0994	[0.093-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56991523	56991524	rs6499862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q13	NR	rs6499862-A	NR	1E-13		0.0243	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	56991523	56991524	rs6499862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs6499862-A	NR	8E-112		0.0768	[0.07-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56991623	56991624	rs28888131	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs28888131-A	NR	1E-11		0.0826465	[0.059-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56992419	56992420	rs77751805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs77751805-A	NR	4E-10		0.0435	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	56993160	56993161	rs12149545	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	16q13		rs12149545-A	0.31	2E-35		0.1129	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1019	chr16	56993160	56993161	rs12149545	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	16q13	CETP	rs12149545-A	0.3035	1E-9		0.0374	[0.025-0.05] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	5E-236		0.136999	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	5E-84		0.0814193	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	7E-248		0.139404	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	1E-124		0.0982902	[0.09-0.106] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	5E-101		0.0879226	[0.08-0.096] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	1E-79		0.0772777	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	5E-39		0.0559668	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	1E-24		0.0436083	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	2E-166		0.117003	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q13		rs3764261-C	0.675666	2E-134		0.108906	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	2E-275		0.145798	[0.14-0.15] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	3E-112		0.0936971	[0.086-0.102] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	4E-135		0.10192	[0.094-0.11] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	2E-46		0.0616184	[0.053-0.07] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	2E-69		0.076061	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	16q13		rs3764261-C	0.675552	2E-20		0.0387914	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	2E-306		0.154759	[0.15-0.16] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	3E-142		0.112153	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs3764261-C	0.675593	3E-85		0.0820315	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	1E-47		0.0628509	[0.054-0.071] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs3764261-C	0.675588	5E-115		0.0974831	[0.089-0.106] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA5	5,367 Icelandic ancestry individuals	NA	16q13		rs3764261-A	0.3266	8E-14		0.150233	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANTXR1	5,364 Icelandic ancestry individuals	NA	16q13		rs3764261-A	0.3266	5E-17		0.167688	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:3_[M+H]1+/Phosphatidylethanolamine_37:3_[M+H]1+/Phosphatidate_39:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	4E-10		0.0776363	[0.053-0.102] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	1E-12		0.0852795	[0.062-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	2E-10		0.079873	[0.055-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	2E-12		0.0876943	[0.063-0.112] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	1E-12		0.0912273	[0.066-0.116] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	1E-11		0.0822219	[0.058-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	2E-12		0.0887992	[0.064-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	3E-12		0.0797519	[0.057-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_20:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	5E-11		0.0584796	[0.041-0.076] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	4E-11		0.054953	[0.039-0.071] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs3764261-A	NR	6E-11		0.0669267	[0.047-0.087] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	16q13		rs3764261-A	0.317	3E-12		0.91		Affymetrix [15679186] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	33499410	Liao YH	2021-01-22	Genes (Basel)	Functional Haplotype of <i>LIPC</i> Induces Triglyceride-Mediated Suppression of HDL-C Levels According to Genome-Wide Association Studies.	High density lipoprotein cholesterol levels	4,000 East Asian ancestry individuals	NA	16q13	CETP	rs3764261-A	NR	3E-27		0.03193	NR unit increase	Affymetrix [614821]	N
1019	chr16	56993323	56993324	rs3764261	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q13	CETP	rs3764261-C	0.675841	1E-49		0.0330572	[0.029-0.037] unit increase	Affymetrix [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q13	CETP	rs3764261-C	0.675737	5E-103		0.0479089	[0.044-0.052] unit increase	Affymetrix [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	16q13	HERPUD1, CETP	rs3764261-?	0.173	5E-17		1.8083184	[1.57-2.08]	Affymetrix [at least 584061] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	3E-14	(XL_HDL_C)	0.08584467	NR unit increase	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	2E-30	(HDL_C)	0.13418226	NR unit increase	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	2E-21	(S_VLDL_C)	0.10682309	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	2E-11	(XS_VLDL_PL)	0.056383576	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	2E-11	(L_VLDL_CE)	0.07790677	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	9E-7	(XS_VLDL_PL)	0.05836282	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	7E-15	(S_VLDL_C)	0.11515576	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	4E-8	(L_VLDL_CE)	0.08060319	NR unit decrease	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	2E-19	(HDL_C)	0.13240822	NR unit increase	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs3764261-?	NR	1E-11	(XL_HDL_C)	0.099250264	NR unit increase	Illumina [609262]	N
1019	chr16	56993323	56993324	rs3764261	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs3764261-?	NR	3E-10		2.372223	[1.63-3.11] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs3764261-?	NR	6E-140		3.045195	[2.81-3.28] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	16q13	CETP	rs3764261-T	NR	7E-7		0.0411	[0.0249-0.0572] unit increase	Illumina [307238]	N
1019	chr16	56993323	56993324	rs3764261	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q13	AC012181.1	rs3764261-A	0.323979	7E-9		0.034744173	[0.023-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	16q13		rs3764261-A	0.3263	3E-6	(EA)	0.0139	[0.008-0.0198] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	16q13		rs3764261-A	0.3257	1E-7	(EA)	1.0765	[0.68-1.48] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	16q13	CETP	rs3764261-A	0.35	7E-43	(Indian)	3.18	[2.73-3.63] unit increase	Illumina [551825]	N
1019	chr16	56993323	56993324	rs3764261	30371334	Tuteja S	2018-10-01	J Am Heart Assoc	Genetic Variants Associated With Plasma Lipids Are Associated With the Lipid Response to Niacin.	HDL cholesterol change in response to niacin in statin-treated individuals	up to 1,034 European ancestry cases, up to 1,020 European ancestry controls	NA	16q13	CETP	rs3764261-?	0.28	2E-8		0.178	unit increase	Illumina [177496]	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	NR	5E-21		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.682	3E-19	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	NR	2E-29		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.695	5E-7	(Hispanic)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.682	1E-21	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	NR	7E-10		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.682	1E-10	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	NR	1E-300		0.214	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.829	7E-48	(East Asian)	0.254	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.695	1E-67	(Hispanic)	0.233	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.689	6E-14	(AA)	0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs3764261-C	0.682	1E-300	(EA)	0.212	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.294	3E-27	(Trans-ethnic initial)	0.0395	[0.032-0.047] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.294	4E-36	(Trans-ethnic initial)	0.0503	[0.042-0.058] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.294	9E-311	(Trans-ethnic initial)	0.241	[0.23-0.25] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.169	2E-74	(Asian initial, BMI unadjusted)	0.262	[0.23-0.29] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	16q13	CETP	rs3764261-A	0.16	1E-29	(BMI unadjusted)	0.232	[0.19-0.27] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q13	CETP	rs3764261-A	0.3261	1E-113		0.26576465	[0.24-0.29] mg/dl increase	Illumina [24111857] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	HDL cholesterol levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	16q13	HERPUD1, CETP, NUP93, SLC12A3	rs3764261-A	NR	1E-16	(Japanese)	0.32	[0.25-0.39] unit increase	Illumina [1294241]	N
1019	chr16	56993323	56993324	rs3764261	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	16q13	CETP	rs3764261-A	0.167	2E-57		0.272	[0.24-0.31] unit increase	Illumina [286795]	N
1019	chr16	56993323	56993324	rs3764261	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.17	2E-97		3.353	[3.04-3.66] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	16q13	CETP	rs3764261-A	0.17	1E-22		4.439	[3.56-5.32] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	HDL Cholesterol in HIV-infection	2,547 individuals	NA	16q13	HERPU, HERPUD1, CETP, CET	rs3764261-?	NR	4E-7		0.03580406	[NR] unit increase	Illumina [5954294] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	16q13	CETP	rs3764261-?	NR	2E-12		1.41		Illumina [4471719] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	16q13	CETP	rs3764261-T	0.16	2E-25	(HDL)	0.062	[0.046-0.078] mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	CETP	rs3764261-A	0.32	2E-25		0.04	[NR] mg/dL decrease	NR [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	CETP	rs3764261-A	0.32	2E-34		0.053	[NR] unit decrease	NR [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	CETP	rs3764261-A	0.32	1E-769		0.241	[NR] unit increase	NR [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	16q13	CETP	rs3764261-A	0.32	4E-31		0.05	[NR] unit increase	NR [NR] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	16q13	CETP	rs3764261-T	0.34	7E-21	(mass)	0.0224	[0.014-0.030] ng/ml increase	Illumina [796174]	N
1019	chr16	56993323	56993324	rs3764261	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	16q13	CETP	rs3764261-?	NR	1E-36	(HDL-C)	0.22	[0.18-0.26] unit increase	Illumina [~ 7700000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	16q13	CETP	rs3764261-A	0.33	7E-9		1.15	[NR]	Affymetrix [6036699] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	CETP	rs3764261-G	NR	3E-13	(BP-HDLC)	0.29	[0.21-0.37] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	16q13	CETP	rs3764261-A	0.305	9E-18		0.203	[0.16-0.25] unit increase	Affymetrix [~ 2740000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	16q13	CETP	rs3764261-A	0.36	1E-48	(HDL)	0.07	[0.06-0.08] mmol/l increase	Illumina [308011]	N
1019	chr16	56993323	56993324	rs3764261	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	16q13	CETP	rs3764261-A	0.45	1E-12		2.88	[2.14-3.62] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	16q13	CETP	rs3764261-T	0.32	9E-13		1.45	[1.06-1.84] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q13	CETP	rs3764261-A	0.32	7E-380		3.39	[3.21-3.57] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	16q13	CETP	rs3764261-A	0.32	7E-14		1.67	[1.22-2.12] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1019	chr16	56993323	56993324	rs3764261	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	16q13	CETP	rs3764261-A	0.21	5E-29	(HDL)	0.254	[0.21-0.3] unit increase	Illumina [561583]	N
1019	chr16	56993323	56993324	rs3764261	19359809	Hiura Y	2009-04-10	Circ J	Identification of genetic markers associated with high-density lipoprotein-cholesterol by genome-wide screening in a Japanese population: the Suita study.	HDL cholesterol	900 Japanese ancestry individuals	1,810 Japanese ancestry individuals	16q13	CETP	rs3764261-A	0.20	3E-12		6.2	mg/dl increase	Illumina [368274]	N
1019	chr16	56993323	56993324	rs3764261	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish founder individuals	NA	16q13	CETP	rs3764261-A	0.28	7E-29		0.09	[0.08-0.11] mmol/l increase	Illumina [329091]	N
1019	chr16	56993323	56993324	rs3764261	18454146	Chambers JC	2008-05-04	Nat Genet	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry male individuals	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	16q13	CETP	rs3764261-?	NR	1E-27	(HDL cholesterol)			Illumina [308067]	N
1019	chr16	56993323	56993324	rs3764261	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	CETP	rs3764261-A	0.31	2E-57		3.47	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	6E-102		0.0943585	[0.086-0.103] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs821840-A	0.675479	1E-170		0.115413	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q13		rs821840-A	0.675542	4E-130		0.107988	[0.099-0.117] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	1E-27		0.0468619	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-22		0.0409452	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	2E-12		0.0300278	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-148		0.11047	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-14		0.0326111	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-67		0.0750181	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	5E-40		0.057161	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	4E-76		0.0797304	[0.071-0.088] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	4E-47		0.061208	[0.053-0.07] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	9E-73		0.0785299	[0.07-0.087] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-40		0.0565935	[0.048-0.065] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	1E-46		0.0620092	[0.054-0.07] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16q13		rs821840-A	0.675437	6E-18		0.0364907	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	5E-262		0.149993	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs821840-A	0.676128	2E-273		0.156009	[0.15-0.16] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs821840-A	0.675479	4E-251		0.136933	[0.13-0.14] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-83		0.0836223	[0.075-0.092] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-67		0.0737377	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	6E-79		0.0800166	[0.072-0.088] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-30		0.0483084	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	4E-71		0.0775553	[0.069-0.086] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-43		0.0579917	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	2E-183		0.1184	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q13		rs821840-A	0.675542	1E-28		0.0487638	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	2E-82		0.0830792	[0.075-0.092] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	9E-71		0.0759173	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-232		0.133779	[0.13-0.14] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-84		0.0829416	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	1E-26		0.0453797	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-75		0.0800543	[0.071-0.089] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	16q13		rs821840-A	0.675437	3E-17		0.0353183	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-93		0.088641	[0.08-0.097] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-57		0.0673482	[0.059-0.076] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-76		0.0801511	[0.072-0.089] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	4E-50		0.0633527	[0.055-0.072] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-76		0.0808919	[0.072-0.089] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-275		0.150751	[0.14-0.16] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	2E-148		0.11258	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	2E-198		0.132136	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	5E-129		0.105177	[0.097-0.114] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	1E-54		0.0663707	[0.058-0.075] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-120		0.102664	[0.094-0.111] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q13		rs821840-A	0.675542	2E-88		0.0881487	[0.079-0.097] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	4E-110		0.0960356	[0.088-0.104] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	3E-147		0.113828	[0.11-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	1E-106		0.0945105	[0.086-0.103] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q13		rs821840-A	0.675474	7E-42		0.0576632	[0.049-0.066] unit increase	NR [11722792] (imputed)	N
1019	chr16	56993885	56993886	rs821840	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q13	HERPUD1, CETP	rs821840-A	0.67	4E-10		6.25	z-score increase	Affymetrix [4314223] (imputed)	N
1019	chr16	56993885	56993886	rs821840	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in obesity	9,083 Korean ancestry cases, 7,008 Korean ancestry controls	NA	16q13	CETP	rs821840-G	0.17	2E-10		0.83	[0.78-0.88]	Affymetrix [7975321]	N
1019	chr16	56993885	56993886	rs821840	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16q13	CNGB1	rs821840-?	NR	5E-37		0.0356	[0.031-0.04] unit decrease	Affymetrix [5701386] (imputed)	N
1019	chr16	56993885	56993886	rs821840	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q13	CETP	rs821840-G	0.168	2E-41		0.0656	[0.056-0.075] unit increase	Affymetrix [at least 805769] (imputed)	N
1019	chr16	56993885	56993886	rs821840	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q13	intergenic	rs821840-A	0.6902	1E-300		0.2211	[0.22-0.23] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	NR	1E-18		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.716	3E-18	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	NR	2E-26		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.733	1E-8	(Hispanic)	0.1	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.716	1E-18	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	NR	5E-9		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.716	4E-10	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	NR	1E-300		0.218	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.857	2E-41	(East Asian)	0.267	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.745	1E-12	(AA)	0.183	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.733	7E-63	(Hispanic)	0.244	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs821840-A	0.716	1E-300	(EA)	0.214	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56993885	56993886	rs821840	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	16q13	CETP	rs821840-A	0.7	2E-11		0.045	[0.031-0.059] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1019	chr16	56994244	56994244	rs36229491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q13		rs36229491-TA	NR	4E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	16q13		rs17231506-T	0.33057925	2E-8		0.128814	[0.084-0.174] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	16q13		rs17231506-T	0.33057925	2E-8		0.129582	[0.085-0.175] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	16q13		rs17231506-T	0.33057925	6E-10		0.142315	[0.097-0.187] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of LDL particles	4,348 individuals	NA	16q13		rs17231506-T	0.330618445	2E-11		0.155084	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	16q13		rs17231506-T	0.33057925	3E-11		0.152475	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small VLDL	4,348 individuals	NA	16q13		rs17231506-T	0.330618445	3E-10		0.144844	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	16q13		rs17231506-T	0.332424556	2E-8		0.124488	[0.081-0.168] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	16q13		rs17231506-T	0.332424556	1E-8		0.125383	[0.082-0.168] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	16q13		rs17231506-T	0.332424556	8E-10		0.135263	[0.092-0.178] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	16q13		rs17231506-T	0.332424556	1E-10		0.141541	[0.099-0.185] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16q13		rs17231506-C	0.676894	4E-19		0.019	[0.015-0.023] unit decrease	NR [7250403] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	High density lipoprotein cholesterol levels	2,045 European ancestry individuals	NA	16q13	NR	rs17231506-T	NR	1E-12		0.238	[0.17-0.3] unit increase	Illumina [~ 9300000] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs17231506-?	NR	8E-10		2.541071	[1.73-3.35] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs17231506-?	NR	9E-120		3.072099	[2.81-3.33] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	NR	2E-20		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.685	1E-19	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	NR	2E-29		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.711	7E-7	(Hispanic)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.685	8E-21	(EA)	0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	NR	2E-9		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.685	1E-10	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	NR	1E-300		0.215	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.833	4E-9	(AA)	0.169	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.828	2E-47	(East Asian)	0.254	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.711	6E-64	(Hispanic)	0.23	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231506-C	0.685	1E-300	(EA)	0.212	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	16q13	CETP	rs17231506-?	NR	2E-18	(EA)	1.16		Illumina [12023830] (imputed)	N
1019	chr16	56994527	56994528	rs17231506	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	16q13	CETP	rs17231506-T	0.31	7E-316		0.243	[0.23-0.25] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1019	chr16	56994893	56994894	rs4783961	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs4783961-?	NR	7E-118		0.02326	[0.021-0.025] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56994893	56994894	rs4783961	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs4783961-?	NR	3E-122		0.02271	[0.021-0.025] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	56994893	56994894	rs4783961	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	16q13	CETP	rs4783961-G	0.44	1E-8	(Indian)	1.29	[0.84-1.74] unit decrease	Illumina [551825]	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:1_[M+H]1+/Phosphatidylethanolamine_37:1_[M+H]1+/Phosphatidate_39:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	2E-11		0.0778359	[0.055-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	1E-13		0.0859196	[0.063-0.109] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	7E-11		0.0775612	[0.054-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	5E-12		0.0777407	[0.056-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	4E-13		0.0848331	[0.062-0.108] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1800775-A	NR	7E-11		0.0689049	[0.048-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16q13		rs1800775-?	NR	9E-18		0.0174191	[0.013-0.021] unit decrease	NR [6912294] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	16q13	NR	rs1800775-A	0.486317	2E-17		0.016619	[0.013-0.02] unit decrease	Affymetrix [16668957] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs1800775-?	NR	6E-32	(M_HDL_TG)	0.098848775	NR unit decrease	Illumina [609262]	N
1019	chr16	56995235	56995236	rs1800775	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs1800775-?	NR	3E-11	(IDL_TG)	0.07670147	NR unit decrease	Illumina [609262]	N
1019	chr16	56995235	56995236	rs1800775	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs1800775-?	NR	9E-17	(M_HDL_TG)	0.104493804	NR unit decrease	Illumina [609262]	N
1019	chr16	56995235	56995236	rs1800775	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs1800775-?	NR	2E-6	(IDL_TG)	0.07082068	NR unit decrease	Illumina [609262]	N
1019	chr16	56995235	56995236	rs1800775	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs1800775-?	NR	2E-7		1.787337	[1.12-2.46] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs1800775-?	NR	1E-87		2.191349	[1.98-2.41] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	16q13	CETP	rs1800775-C	0.39	6E-27	(Indian)	2.4	[1.97-2.83] unit decrease	Illumina [551825]	N
1019	chr16	56995235	56995236	rs1800775	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	HDL cholesterol	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	16q13	CETP	rs1800775-A	0.392	7E-8	(Filipino)	0.195	[0.12-0.27] unit increase	Affymetrix, Illumina [up to 12553142] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16q13	CETP	rs1800775-A	0.4905	6E-10		0.0405	[0.028-0.053] unit decrease	NR [8041861] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	16q13	CETP	rs1800775-A	NR	8E-18		1.51	[1.29-1.77]	Affymetrix [~ 8000000] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q13	CETP	rs1800775-A	0.5	1E-11	(X-12038)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	16q13	CETP	rs1800775-A	0.4	3E-9	(HDL-C)	0.04	[0.020-0.060] unit increase	Affymetrix [~ 3700000] (imputed)	N
1019	chr16	56995235	56995236	rs1800775	20031564	Ridker PM	2009-02-01	Circ Cardiovasc Genet	Polymorphism in the CETP gene region, HDL cholesterol, and risk of future myocardial infarction: Genomewide analysis among 18 245 initially healthy women from the Women's Genome Health Study.	HDL cholesterol	18,245 European ancestry females	NA	16q13	SLC12A3, HERPUD1, CETP, NUP93	rs1800775-A	0.49	4E-93		3.09	mg/dL increase	Illumina [~ 318237]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	8E-78	(HDL.mean.size, whole)	0.086	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	5E-87	(HDL.large, whole)	0.729	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	3E-93	(HDL-C.assay, whole)	3.096	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	2E-59	(HDL.large, fasting)	0.703	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	1E-81	(HDL-C.by.NMR, whole)	2.658	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1800775-?	NR	1E-53	(HDL.mean.size, fasting)	0.084	[NR] unit increase	Illumina [335603]	N
1019	chr16	56995235	56995236	rs1800775	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	16q13	CETP	rs1800775-C	0.51	1E-73		0.18	[0.16-0.20] unit decrease	Affymetrix [389878]	N
1019	chr16	56995235	56995236	rs1800775	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	HDL cholesterol levels	2,623 European ancestry type 2 diabetes cases and controls	NA	16q13	CETP	rs1800775-C	0.47	3E-13		2.1	(% variance) increase	Affymetrix [389878]	N
1019	chr16	56995235	56995236	rs1800775	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Apolipoprotein A1 levels	1,451 European ancestry type 2 diabetes cases and controls	NA	16q13	CETP	rs1800775-C	0.44	3E-6		1.6	(% variance) increase	Affymetrix [389878]	N
1019	chr16	56995826	56995827	rs17231520	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q13		rs17231520-?	NR	7E-72		0.448	[0.4-0.5] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56995826	56995827	rs17231520	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs17231520-?	NR	7E-72		6.446645	[5.74-7.15] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	56995826	56995827	rs17231520	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231520-G	NR	2E-21		0.321	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56995826	56995827	rs17231520	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231520-G	0.999	6E-6	(EA)	0.341	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56995826	56995827	rs17231520	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs17231520-G	0.941	1E-13	(AA)	0.34	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	56995907	56995908	rs34119551	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	16q13	CETP	rs34119551-?	0.0024	2E-19	(AA)	16.0	mg/dl increase	Illumina [247644]	N
1019	chr16	56995934	56995935	rs34065661	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	HDL cholesterol levels	14,126 African ancestry individuals	NA	16q13		rs34065661-C	0.865	1E-67		0.344975	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
1019	chr16	56995934	56995935	rs34065661	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	HDL cholesterol	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	16q13	CETP	rs34065661-G	0.093	9E-10	(Yoruban)	0.468	unit increase	Affymetrix, Illumina [up to 12553142] (imputed)	N
1019	chr16	56996157	56996158	rs3816117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs3816117-T	0.511886	1E-18		0.034647	[0.027-0.042] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56996157	56996158	rs3816117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VOPP1	5,364 Icelandic ancestry individuals	NA	16q13		rs3816117-T	0.4986	2E-19		0.171972	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1019	chr16	56996210	56996211	rs711752	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large HDL	4,734 individuals	NA	16q13		rs711752-A	0.446188909	4E-8		0.116254	[0.075-0.158] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	56996210	56996211	rs711752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(34:3)_[M+H]1+/Phosphatidylethanolamine-P(37:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	16q13		rs711752-C	NR	2E-10		0.0508	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1019	chr16	56996210	56996211	rs711752	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	16q13	CETP	rs711752-A	NR	4E-308				NR [2501543] (imputed)	N
1019	chr16	56996210	56996211	rs711752	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	16q13	CETP	rs711752-?	NR	8E-13	(HDL cholesterol)			Illumina [up to 10879115] (imputed)	N
1019	chr16	56996287	56996288	rs708272	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs708272-A	NR	4E-11		0.0769085	[0.054-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56996287	56996288	rs708272	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs708272-A	NR	2E-10		0.0767663	[0.053-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56996287	56996288	rs708272	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs708272-A	NR	3E-11		0.0756125	[0.053-0.098] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56996287	56996288	rs708272	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs708272-A	NR	7E-12		0.0811753	[0.058-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56996648	56996649	rs34620476	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	16q13		rs34620476-C	0.56779	2E-14		0.0306969	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs1864163-G	0.738678	1E-33		0.054778	[0.046-0.064] unit increase	NR [11722792] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs1864163-G	0.738678	2E-24		0.0463849	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1864163-A	NR	1E-10		0.0867513	[0.06-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1864163-A	NR	2E-11		0.0861968	[0.061-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1864163-A	NR	1E-10		0.0860296	[0.06-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1864163-A	NR	1E-10		0.0697572	[0.049-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	16q13	CETP	rs1864163-?	NR	3E-13		7.315	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs1864163-?	NR	1E-8		2.242838	[1.47-3.01] unit decrease	Illumina [32003504] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs1864163-?	NR	5E-79		2.366275	[2.12-2.61] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	High density lipoprotein cholesterol levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	16q13	CETP	rs1864163-A	NR	1E-8	(additive model)	5.707	z-score decrease	Illumina [632375]	N
1019	chr16	56997232	56997233	rs1864163	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	16q13	CETP	rs1864163-A	0.13	3E-8	(Asian initial, BMI unadjusted)	0.088	[0.057-0.119] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	16q13	CETP	rs1864163-G	0.76	7E-16		1.22	[1.17-1.27]	Affymetrix, Illumina [2442884] (imputed)	N
1019	chr16	56997232	56997233	rs1864163	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1864163-?	NR	7E-22	(LDL.large, fasting)	30.38	[NR] unit decrease	Illumina [335603]	N
1019	chr16	56997232	56997233	rs1864163	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1864163-?	NR	3E-25	(LDL.large, whole)	27.87	[NR] unit decrease	Illumina [335603]	N
1019	chr16	56997232	56997233	rs1864163	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q13	CETP	rs1864163-G	0.8	7E-39		4.12	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1019	chr16	56997349	56997349	rs5817082	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	16q13	CETP	rs5817082-C	0.26	1E-10		1.11	[1.08-1.14]	Affymetrix, Illumina [11702853] (imputed)	N
1019	chr16	56997349	56997349	rs5817082	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q13		rs5817082-?	NR	1E-71		0.149	[0.13-0.16] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	56997349	56997349	rs5817082	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	16q13	CETP	rs5817082-?	NR	4E-19	(EA)	1.1904762		Illumina [12023830] (imputed)	N
1019	chr16	56998917	56998918	rs12720926	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16q13	CETP	rs12720926-?	NR	1E-8	(TransMeta)			Illumina [3153931] (imputed)	N
1019	chr16	56999257	56999258	rs7203984	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q13	CETP	rs7203984-A	0.8067	2E-12		0.017	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1019	chr16	56999257	56999258	rs7203984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q13		rs7203984-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1019	chr16	56999327	56999328	rs11508026	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16q13		rs11508026-C	0.567529	1E-11		0.027324	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1019	chr16	56999327	56999328	rs11508026	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	16q13	CETP	rs11508026-T	NR	3E-14				NR [25015711] (imputed)	N
1019	chr16	57000283	57000284	rs820299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs820299-G	NR	2E-40		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000283	57000284	rs820299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs820299-G	0.384	7E-38	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000695	57000696	rs8045855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs8045855-T	0.81449	4E-94		0.109205	[0.099-0.12] unit increase	NR [11722792] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	16q13		rs12720922-A	0.167032561	8E-16		0.225029	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	16q13		rs12720922-A	0.167032561	1E-14		0.215513	[0.16-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs12720922-?	NR	2E-299		0.04674	[0.044-0.049] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs12720922-?	NR	2E-305		0.04699	[0.044-0.05] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs12720922-?	NR	7E-49		1.910413	[1.66-2.17] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29728394	Blauw LL	2018-05-01	Circ Genom Precis Med	CETP (Cholesteryl Ester Transfer Protein) Concentration: A Genome-Wide Association Study Followed by Mendelian Randomization on Coronary Artery Disease.	Cholesteryl ester transfer protein levels	4248 individuals	1458 individuals	16q13	CETP	rs12720922-A	0.17	3E-74		0.35	[0.31-0.39] ug/mL increase	Illumina [NR] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	NR	2E-16		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	0.822	4E-13	(EA)	0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	NR	1E-32		0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	0.822	2E-26	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	NR	1E-300		0.207	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	0.863	1E-19	(East Asian)	0.176	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	0.822	1E-300	(EA)	0.217	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000884	57000885	rs12720922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs12720922-G	0.793	8E-45	(Hispanic)	0.214	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs118146573-?	NR	7E-43		2.715153	[2.33-3.1] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	NR	1E-9		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	0.883	1E-8	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	NR	3E-22		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	0.883	2E-19	(EA)	0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	NR	1E-300		0.222	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	0.983	1E-6	(East Asian)	0.281	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	0.954	4E-7	(AA)	0.262	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs118146573-G	0.874	2E-27	(Hispanic)	0.201	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57000937	57000938	rs118146573	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Cholesterol, total	3,701 Mexican ancestry individuals	5,114 Mexican ancestry individuals, 903 Mexican ancestry individuals from 73 dyslipidemic families	16q13	CETP	rs118146573-A	NR	4E-10		0.2	[NR] unit decrease	Illumina [1661241] (imputed)	N
1019	chr16	57001274	57001275	rs200751500	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	High density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	16q13	CETP	rs200751500-A	0.33	4E-25		0.294	[0.24-0.35] unit increase	Illumina [at least 13541454] (imputed)	N
1019	chr16	57002662	57002663	rs9926440	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	16q13	CETP	rs9926440-C	0.31	3E-14		1.16	[1.11-1.20]	Affymetrix [7975321]	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium HDL	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	2E-10		0.172064	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium HDL	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	3E-13		0.197669	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in HDL2	4,348 individuals	NA	16q13		rs9939224-G	0.808967906	2E-16		0.223523	[0.17-0.28] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium HDL	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	1E-8		0.154306	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium HDL particle concentration	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	6E-10		0.168057	[0.11-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium HDL	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	4E-10		0.170068	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium HDL	4,348 individuals	NA	16q13		rs9939224-G	0.809557166	4E-14		0.205162	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium HDL	4,734 individuals	NA	16q13		rs9939224-G	0.809057864	2E-11		0.174204	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium HDL	4,734 individuals	NA	16q13		rs9939224-G	0.809057864	2E-14		0.198397	[0.15-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium HDL	4,734 individuals	NA	16q13		rs9939224-G	0.809057864	3E-11		0.173214	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium HDL	4,734 individuals	NA	16q13		rs9939224-G	0.809057864	3E-15		0.204479	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs9939224-T	NR	1E-15		0.104255	[0.079-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs9939224-T	NR	1E-16		0.0969837	[0.074-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	3E-11		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	2E-29		0.0329	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	6E-50		0.0432	[0.038-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	2E-37		0.0373	[0.032-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	1E-9		0.0198	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	2E-1466		0.2474	[0.24-0.25] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	6E-67		0.0504	[0.045-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs9939224-G	NR	3E-878		0.1925	[0.19-0.2] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs9939224-?	NR	7E-10	(XL_VLDL_CE)	0.06344351	NR unit increase	Illumina [609262]	N
1019	chr16	57002731	57002732	rs9939224	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs9939224-?	NR	2E-21	(L_HDL_CE)	0.1061244	NR unit decrease	Illumina [609262]	N
1019	chr16	57002731	57002732	rs9939224	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs9939224-?	NR	2E-13	(L_HDL_CE)	0.108586855	NR unit decrease	Illumina [609262]	N
1019	chr16	57002731	57002732	rs9939224	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	NR	rs9939224-?	NR	1E-97		0.1861	[0.17-0.2] unit decrease novel	Illumina [6108953] (imputed)	N
1019	chr16	57002731	57002732	rs9939224	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	16q13	CETP	rs9939224-G	0.46	7E-12	(HDLC-GLUC)	0.31	[0.21-0.41] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs11076174-?	NR	2E-31		2.121392	[1.77-2.48] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	NR	2E-12		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	0.918	3E-8	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	NR	2E-125		0.149	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	0.918	6E-95	(EA)	0.145	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	0.907	3E-15	(Hispanic)	0.168	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003145	57003146	rs11076174	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs11076174-T	0.898	2E-15	(East Asian)	0.177	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57003550	57003551	rs150236668	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q13		rs150236668-?	NR	2E-41		0.799979	[0.68-0.92] unit increase	NR [9800000] (imputed)	N
1019	chr16	57003550	57003551	rs150236668	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	16q13		rs150236668-?	NR	2E-18		0.557746	[0.43-0.68] unit increase	NR [9800000] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	3E-8		0.0221349	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	1E-13		0.0296224	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	1E-13		0.0299176	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	9E-15		0.0311075	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	5E-8		0.0215788	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	9E-20		0.0364442	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	16q13		rs7205804-G	0.559631	5E-13		0.0280606	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	9E-23	(S_HDL_TG)	0.09787611	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	8E-10	(L_LDL_CE)	0.042163562	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	7E-14	(XS_VLDL_FC)	0.07389849	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	7E-12	(L_LDL_C)	0.04533447	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	5E-17	(S_VLDL_PL)	0.0909598	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	4E-12	(L_LDL_PL)	0.047621954	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	3E-17	(Remnant_C)	0.09693107	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	1E-18	(L_HDL_L)	0.09916061	NR unit increase	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	1E-13	(S_VLDL_P)	0.07584375	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	1E-10	(L_LDL_L)	0.048581313	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	1E-10	(IDL_P)	0.06785827	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	7E-8	(XS_VLDL_FC)	0.07952037	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	7E-10	(S_VLDL_P)	0.07716724	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	5E-13	(S_VLDL_PL)	0.0901578	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	4E-6	(IDL_P)	0.06836907	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	4E-19	(S_HDL_TG)	0.11132441	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	3E-12	(L_HDL_L)	0.10283397	NR unit increase	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q13	CETP	rs7205804-?	NR	1E-10	(Remnant_C)	0.09472596	NR unit decrease	Illumina [609262]	N
1019	chr16	57004888	57004889	rs7205804	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	16q13	CETP	rs7205804-?	NR	5E-14	(HDL)	0.33	[0.25-0.41] unit increase	Illumina [14948665] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	NR	3E-16		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.564	6E-16	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	NR	2E-25		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.564	3E-19	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	NR	5E-6		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.564	7E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	NR	1E-300		0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.677	4E-28	(East Asian)	0.159	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.628	5E-47	(Hispanic)	0.184	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004888	57004889	rs7205804	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7205804-G	0.564	1E-300	(EA)	0.179	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57004960	57004961	rs142750310	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q13		rs142750310-?	NR	1E-9		1.11469	[0.74-1.49] unit increase	NR [9800000] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:2_[M+H]1+/Phosphatidylethanolamine_37:2_[M+H]1+/Phosphatidate_39:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1532624-A	NR	8E-11		0.0735693	[0.051-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_34:0_[M+H]1+/Phosphatidylethanolamine_37:0_[M+H]1+/Phosphatidate_39:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1532624-A	NR	1E-11		0.0800641	[0.057-0.103] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1532624-A	NR	6E-12		0.0831488	[0.059-0.107] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1532624-A	NR	1E-12		0.081493	[0.059-0.104] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs1532624-A	NR	4E-13		0.0866889	[0.063-0.11] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs1532624-?	NR	3E-6		1.809502	[1.05-2.57] unit increase	Illumina [32003504] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs1532624-?	NR	2E-76		2.282911	[2.04-2.52] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	High density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	16q13	CETP	rs1532624-A	0.49	3E-30	(Indian)	2.53	[2.1-2.96] unit increase	Illumina [551825]	N
1019	chr16	57005478	57005479	rs1532624	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	16q13	NLRC5, SLC12A3, HERPUD1, CETP	rs1532624-A	0.43	1E-24		0.23	[0.19-0.27] unit increase	Illumina [1361436] (imputed)	N
1019	chr16	57005478	57005479	rs1532624	20066028	Igl W	2010-01-08	PLoS Genet	Modeling of environmental effects in genome-wide association studies identifies SLC2A2 and HP as novel loci influencing serum cholesterol levels.	Cholesterol	656 European ancestry individuals	Up to 3,282 European ancestry individuals	16q13	CETP	rs1532624-?	NR	3E-20		9.99	[NR] mg/dl increase between hmz	Illumina [~ 311388]	N
1019	chr16	57005478	57005479	rs1532624	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1532624-?	NR	3E-55	(HDL-C.by.NMR, fasting)	2.608	[NR] unit increase	Illumina [335603]	N
1019	chr16	57005478	57005479	rs1532624	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1532624-?	NR	1E-66	(HDL-C.assay, fasting)	3.094	[NR] unit increase	Illumina [335603]	N
1019	chr16	57005478	57005479	rs1532624	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs1532624-?	NR	1E-39	(APOA1.assay, fasting)	3.92	[NR] unit increase	Illumina [335603]	N
1019	chr16	57005478	57005479	rs1532624	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	16q13	CETP	rs1532624-C	0.57	9E-94		0.21	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1019	chr16	57006377	57006378	rs11076175	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	16q13		rs11076175-A	0.821079	2E-19		0.0478152	[0.037-0.058] unit increase	NR [11722792] (imputed)	N
1019	chr16	57006377	57006378	rs11076175	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	16q13		rs11076175-A	0.821108	1E-16		0.0441014	[0.034-0.055] unit increase	NR [11722792] (imputed)	N
1019	chr16	57006377	57006378	rs11076175	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	16q13		rs11076175-A	0.821108	3E-13		0.0388432	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
1019	chr16	57006377	57006378	rs11076175	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs11076175-A	0.821079	3E-33		0.0649455	[0.054-0.076] unit increase	NR [11722792] (imputed)	N
1019	chr16	57006377	57006378	rs11076175	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16q13		rs11076175-A	0.821642	5E-20		0.024	[0.018-0.03] unit increase	NR [7250403] (imputed)	N
1019	chr16	57006377	57006378	rs11076175	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16q13	NR	rs11076175-?	NR	8E-29	(Total cholesterol in HDL, conditioned)	0.1511545	[0.12-0.18] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q13		rs7499892-C	0.820889	9E-25		0.0540336	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein A-I	4,348 individuals	NA	16q13		rs7499892-T	0.165212282	5E-16		0.23347	[0.18-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	16q13		rs7499892-T	0.165609921	8E-16		0.224855	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.165609921	5E-16		0.226125	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	2E-15		0.222376	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	1E-15		0.224378	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL3	4,734 individuals	NA	16q13		rs7499892-T	0.166771815	1E-12		0.194748	[0.14-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL2	4,734 individuals	NA	16q13		rs7499892-T	0.166948718	7E-19		0.242821	[0.19-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	16q13		rs7499892-T	0.166736586	7E-18		0.23581	[0.18-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.165609921	2E-15		0.221954	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	1E-14		0.217197	[0.16-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	16q13		rs7499892-T	0.166736586	4E-18		0.237746	[0.18-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	3E-15		0.222077	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.165609921	2E-18		0.243696	[0.19-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	9E-15		0.218004	[0.16-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	16q13		rs7499892-T	0.164676536	9E-16		0.225968	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein A-I	4,734 individuals	NA	16q13		rs7499892-T	0.166736586	2E-18		0.240057	[0.19-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs7499892-T	NR	2E-10		0.0935885	[0.065-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_18:0_[M+H]1+/Lysophosphatidylethanolamine_21:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs7499892-T	NR	7E-14		0.103251	[0.076-0.13] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_18:0_[M-H]1- levels	13,814 British ancestry individuals	NA	16q13		rs7499892-T	NR	4E-10		0.0629917	[0.043-0.083] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylcholine_16:0_[M+H]1+/Lysophosphatidylethanolamine_19:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	16q13		rs7499892-T	NR	2E-16		0.102173	[0.078-0.126] unit increase	Affymetrix [87696910] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q13		rs7499892-?	NR	1E-88		0.178	[0.16-0.2] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q13	NR	rs7499892-?	NR	2E-7		2.081709	[1.3-2.86] unit decrease	Illumina [32003504] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs7499892-?	NR	1E-88		2.561099	[2.31-2.81] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	NR	3E-16		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.821	1E-12	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	NR	3E-35		0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.821	1E-27	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.794	6E-6	(Hispanic)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	NR	1E-300		0.216	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.838	8E-24	(East Asian)	0.181	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.821	1E-300	(EA)	0.223	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.794	6E-49	(Hispanic)	0.223	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs7499892-C	0.632	2E-10	(AA)	0.142	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	HDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	16q13	CETP	rs7499892-C	0.773	4E-49	(Hispanic)	0.243	[0.21-0.27] unit increase	Affymetrix [at least 370268] (imputed)	N
1019	chr16	57006589	57006590	rs7499892	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs7499892-?	NR	2E-14	(HDL.total, fasting)	0.742	[NR] unit decrease	Illumina [335603]	N
1019	chr16	57006589	57006590	rs7499892	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	16q13	CETP	rs7499892-?	NR	1E-20	(HDL.total, whole)	0.761	[NR] unit decrease	Illumina [335603]	N
1019	chr16	57006589	57006590	rs7499892	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	16q13	CETP	rs7499892-A	0.16	9E-6	(HDL cholesterol)	0.24	[0.14-0.34] mmol/L decrease	Illumina [316730]	N
1019	chr16	57006828	57006829	rs289713	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	16q13	NR	rs289713-A	0.656749	4E-8		0.0149	[0.0096-0.0202] unit decrease	Affymetrix [23037915] (imputed)	N
1019	chr16	57006828	57006829	rs289713	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium HDL	4,734 individuals	NA	16q13		rs289713-A	0.820003179	7E-10		0.16584	[0.11-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57006828	57006829	rs289713	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium HDL particle concentration	4,734 individuals	NA	16q13		rs289713-A	0.820003179	6E-11		0.176318	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1019	chr16	57006828	57006829	rs289713	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	16q13	CETP	rs289713-?	NR	8E-10		0.01454	[0.0099-0.0192] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57007352	57007353	rs5883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q13	NR	rs5883-T	NR	3E-9		0.0315	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57007352	57007353	rs5883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs5883-T	NR	4E-153		0.1453	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57007352	57007353	rs5883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs5883-T	NR	4E-90		0.1114	[0.1-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57007352	57007353	rs5883	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q13		rs5883-?	NR	4E-28		0.183	[0.15-0.22] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr16	57007352	57007353	rs5883	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs5883-?	NR	4E-28		2.633338	[2.16-3.1] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	57007352	57007353	rs5883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5883-C	NR	7E-8		0.055	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57007352	57007353	rs5883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5883-C	0.946	2E-7	(EA)	0.056	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57007352	57007353	rs5883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5883-C	NR	1E-44		0.115	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57007352	57007353	rs5883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5883-C	0.958	9E-8	(Hispanic)	0.165	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57007352	57007353	rs5883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5883-C	0.946	3E-35	(EA)	0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57007360	57007361	rs369941536	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q13		rs369941536-?	NR	4E-43		0.827392	[0.7-0.95] unit increase	NR [9800000] (imputed)	N
1019	chr16	57007360	57007361	rs369941536	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	16q13		rs369941536-?	NR	5E-20		0.585083	[0.45-0.72] unit increase	NR [9800000] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs11076176-T	0.832256	6E-14		0.0421447	[0.031-0.053] unit increase	NR [11722792] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs11076176-T	0.832256	4E-8		0.0303406	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs11076176-T	0.832256	4E-16		0.0454147	[0.034-0.056] unit increase	NR [11722792] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	16q13		rs11076176-T	0.832256	3E-17		0.0477012	[0.037-0.059] unit increase	NR [11722792] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	16q13		rs11076176-T	0.832256	2E-22		0.0549921	[0.044-0.066] unit increase	NR [11722792] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	16q13		rs11076176-T	NR	2E-22		0.131	unit increase	Illumina [NR] (imputed)	N
1019	chr16	57007445	57007446	rs11076176	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	16q13	CETP	rs11076176-?	NR	9E-11		0.01786	[0.013-0.023] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57007511	57007512	rs12691052	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	16q13	CETP, HERPUD1, LOC100130044	rs12691052-A	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
1019	chr16	57007986	57007987	rs188149780	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	CETP	rs188149780-?	NR	2E-9	(Native Hawaiian)	20.39148	[13.75-27.04] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	57007986	57007987	rs188149780	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	CETP	rs188149780-?	NR	2E-6	(Asian)	11.41465	[6.67-16.16] unit increase	Illumina [31978362] (imputed)	N
1019	chr16	57008507	57008508	rs289715	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	16q13		rs289715-A	0.12	7E-23		1.92	[1.53-2.31] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1019	chr16	57009034	57009044	rs779824367	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q13		rs779824367-?	NR	1E-23		1.01839	[0.81-1.23] unit increase	NR [9800000] (imputed)	N
1019	chr16	57009034	57009044	rs779824367	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	16q13		rs779824367-?	NR	1E-10		0.717488	[0.5-0.94] unit increase	NR [9800000] (imputed)	N
1019	chr16	57009136	57009137	rs545858676	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	CETP	rs545858676-A	0.962788	1E-58		0.0975026	[0.086-0.109] unit increase	Affymetrix [NR] (imputed)	N
1019	chr16	57009931	57009932	rs289718	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs289718-?	NR	5E-106		0.02191	[0.02-0.024] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57009940	57009941	rs289719	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs289719-?	NR	4E-108		0.02173	[0.02-0.024] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57009984	57009985	rs2033254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs2033254-C	NR	1E-14		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57009984	57009985	rs2033254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs2033254-C	NR	5E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q13	NR	rs56208677-T	NR	3E-9		0.0284	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q13	NR	rs56208677-T	NR	2E-10		0.0303	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs56208677-T	NR	4E-279		0.1775	[0.17-0.19] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q13	NR	rs56208677-T	NR	3E-15		0.0377	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs56208677-T	NR	1E-169		0.1387	[0.13-0.15] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57010231	57010232	rs56208677	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs56208677-?	NR	1E-47		0.04018	[0.035-0.046] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1019	chr16	57010485	57010486	rs117427818	29728394	Blauw LL	2018-05-01	Circ Genom Precis Med	CETP (Cholesteryl Ester Transfer Protein) Concentration: A Genome-Wide Association Study Followed by Mendelian Randomization on Coronary Artery Disease.	Cholesteryl ester transfer protein levels	4248 individuals	1458 individuals	16q13	CETP	rs117427818-T	0.050	3E-33		0.46	[0.39-0.53] ug/mL increase	Illumina [NR] (imputed)	N
1019	chr16	57010954	57010955	rs116893196	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	NR	rs116893196-?	NR	3E-59		0.1895	[0.17-0.21] unit decrease novel	Illumina [6108953] (imputed)	N
1019	chr16	57012378	57012379	rs12708980	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Low HDL-cholesterol levels	7,423 Korean ancestry cases and controls	NA	16q13	NR	rs12708980-?	NR	2E-6		1.399	[1.218-1.606]	Affymetrix [at least 584061] (imputed)	N
1019	chr16	57012378	57012379	rs12708980	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	2,253 Korean ancestry cases and controls	NA	16q13	NR	rs12708980-?	NR	3E-6		1.399	[1.218-1.606]	Affymetrix [at least 584061] (imputed)	N
1019	chr16	57012378	57012379	rs12708980	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs12708980-?	NR	1E-7		0.6297683	[0.4-0.86] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57012378	57012379	rs12708980	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q13	CETP	rs12708980-?		7E-10				Affymetrix [at least 805769] (imputed)	N
1019	chr16	57012378	57012379	rs12708980	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	16q13	CETP	rs12708980-C	0.10	2E-28		0.0396	[0.033-0.047] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
1019	chr16	57015090	57015091	rs5880	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs5880-?	NR	1E-27		2.977389	[2.44-3.51] unit decrease	Illumina [31978362] (imputed)	N
1019	chr16	57015090	57015091	rs5880	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	16q13		rs5880-C	0.0538	3E-117		0.0718	[0.066-0.078] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	NR	2E-11		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	0.953	4E-10	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	NR	2E-11		0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	0.953	2E-10	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	NR	3E-218		0.274	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	0.984	2E-7	(AA)	0.482	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	0.953	1E-190	(EA)	0.275	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs5880-G	0.93	1E-24	(Hispanic)	0.254	unit increase	Affymetrix [at least 7091467] (imputed)	N
1019	chr16	57015090	57015091	rs5880	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	HDL cholesterol	3,701 Mexican ancestry individuals	5,114 Mexican ancestry individuals, 903 Mexican ancestry individuals from 73 dyslipidemic families	16q13	HERPUD1, CETP	rs5880-C	NR	2E-16		0.29	[NR] unit decrease	Illumina [1661241] (imputed)	N
1019	chr16	57015544	57015545	rs1800774	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	16q13	CETP	rs1800774-T	0.12	2E-6	(BMI adjusted)	0.069	[0.042-0.096] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1019	chr16	57016091	57016092	rs5882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q13	NR	rs5882-A	NR	2E-15		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57016091	57016092	rs5882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q13	NR	rs5882-A	NR	4E-11		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57016091	57016092	rs5882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs5882-A	NR	8E-392		0.1125	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
1019	chr16	57016091	57016092	rs5882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q13	NR	rs5882-A	NR	9E-20		0.0232	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1019	chr16	57016091	57016092	rs5882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs5882-A	NR	9E-246		0.0893	[0.084-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57017001	57017002	rs9923854	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs9923854-?	NR	1E-28		2.374108	[1.96-2.79] unit increase	Illumina [31978362] (imputed)	N
1020	chr16	57017001	57017002	rs9923854	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9923854-T	NR	1E-6		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017001	57017002	rs9923854	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9923854-T	0.888	9E-6	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017001	57017002	rs9923854	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9923854-T	NR	1E-41		0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017001	57017002	rs9923854	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs9923854-T	0.888	9E-35	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017291	57017292	rs2303790	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q13	CETP	rs2303790-G	0.046	8E-6		6.412	[3.6-9.22] unit increase	Affymetrix [at least 805769] (imputed)	N
1020	chr16	57017291	57017292	rs2303790	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q13	CETP	rs2303790-G	0.046	1E-32		0.1039	[0.087-0.121] unit increase	Affymetrix [at least 805769] (imputed)	N
1020	chr16	57017291	57017292	rs2303790	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	16q13	NR	rs2303790-?	NR	3E-14		0.07997	[0.059-0.101] unit increase novel	Illumina [6108953] (imputed)	N
1020	chr16	57017291	57017292	rs2303790	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	NR	rs2303790-?	NR	5E-198		0.4241	[0.4-0.45] unit increase novel	Illumina [6108953] (imputed)	N
1020	chr16	57017291	57017292	rs2303790	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	16q13	CETP	rs2303790-G	0.027	3E-29		0.44	[0.36-0.52] unit increase	Illumina [286795]	N
1020	chr16	57017291	57017292	rs2303790	25629512	Cheng CY	2015-01-28	Nat Commun	New loci and coding variants confer risk for age-related macular degeneration in East Asians.	Exudative age-related macular degeneration	2,119 East Asian ancestry cases, 5,691 East Asian ancestry controls	4,226 East Asian ancestry cases, 10,289 East Asian ancestry controls	16q13	CETP	rs2303790-?	NR	6E-22		1.7	[NR]	Illumina [4471719] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	3E-12		0.043	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	5E-25		0.0635	[0.051-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	8E-10		0.0378	[0.026-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	2E-551		0.3221	[0.31-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	4E-22		0.0596	[0.047-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs1800777-A	NR	5E-330		0.2495	[0.24-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57017318	57017319	rs1800777	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs1800777-?	NR	2E-136		0.07039	[0.064-0.076] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57017661	57017662	rs1801706	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	16q13		rs1801706-A	0.177069	3E-8	meal response (conditional)	0.169718	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
1020	chr16	57017661	57017662	rs1801706	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q13	NR	rs1801706-?	NR	4E-8	(conditional on round 6)	0.04579008	[0.029-0.062] unit increase novel	Illumina [6108953] (imputed)	N
1020	chr16	57017761	57017762	rs289742	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q13	NR	rs289742-?	NR	2E-10		0.8383523	[0.58-1.1] unit decrease	Illumina [31978362] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	NR	5E-8		0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	0.131	5E-7	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	NR	6E-123		0.117	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	0.196	4E-11	(East Asian)	0.122	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	0.165	7E-13	(Hispanic)	0.12	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57017761	57017762	rs289742	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q13	NR	rs289742-C	0.131	1E-108	(EA)	0.125	unit increase	Affymetrix [at least 7091467] (imputed)	N
1020	chr16	57019531	57019532	rs289745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs289745-C	0.40134	3E-9		0.0222929	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57019531	57019532	rs289745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs289745-C	0.40134	2E-8		0.0213434	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57019531	57019532	rs289745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs289745-A	NR	2E-12		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57020326	57020327	rs17369163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs17369163-G	NR	4E-18		0.0336	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57020326	57020327	rs17369163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs17369163-G	NR	8E-11		0.0252	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57021432	57021433	rs12934552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs12934552-G	NR	9E-81		0.0693	[0.062-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57021432	57021433	rs12934552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs12934552-G	NR	2E-51		0.0551	[0.048-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57024316	57024317	rs17290922	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	16q13	NLRC5	rs17290922-?	NR	8E-6	(Mood symptoms)	0.1338	[NR] unit decrease	Affymetrix [696491]	N
1020	chr16	57026293	57026294	rs289749	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs289749-A	NR	3E-36		0.0344	[0.029-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57026293	57026294	rs289749	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs289749-A	NR	8E-21		0.0257	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57026935	57026936	rs289752	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs289752-?	NR	8E-31		0.01113	[0.0091-0.0131] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57026935	57026936	rs289752	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs289752-?	NR	5E-24		0.01001	[0.008-0.012] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57031729	57031730	rs7187275	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs7187275-?	NR	2E-29		0.02682	[0.021-0.032] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57031729	57031730	rs7187275	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q13	CETP	rs7187275-?	NR	3E-21		0.02542	[0.02-0.031] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57032141	57032142	rs289737	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	16q13	NR	rs289737-?	NR	5E-6		0.037	[0.021-0.053] unit increase	Illumina [~ 7800000] (imputed)	N
1020	chr16	57032818	57032819	rs75378421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs75378421-T	NR	2E-21		0.0536	[0.043-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57032818	57032819	rs75378421	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs75378421-T	NR	4E-14		0.0428	[0.032-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57033695	57033696	rs1875236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs1875236-A	NR	1E-65		0.0694	[0.061-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57033695	57033696	rs1875236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs1875236-A	NR	4E-42		0.0554	[0.047-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57036357	57036358	rs821465	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs821465-C	0.195545	7E-10		0.0312148	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57036638	57036639	rs176532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs176532-T	0.195776	5E-10		0.0311015	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57036638	57036639	rs176532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs176532-T	0.195776	6E-9		0.0293338	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1020	chr16	57037902	57037903	rs289707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs289707-C	NR	1E-34		0.038	[0.032-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57037902	57037903	rs289707	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs289707-C	NR	3E-20		0.0286	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57045279	57045280	rs4783965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs4783965-G	0.736661	9E-13		0.0319577	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1020	chr16	57045279	57045280	rs4783965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q13		rs4783965-G	0.736661	2E-12		0.0335333	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57045279	57045280	rs4783965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs4783965-G	0.736661	6E-11		0.0294909	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1020	chr16	57045279	57045280	rs4783965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	16q13		rs4783965-G	0.736661	3E-12		0.0315377	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1020	chr16	57045279	57045280	rs4783965	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs4783965-G	0.736653	5E-11		0.0309522	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57045619	57045620	rs1167514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs1167514-A	0.669971	4E-13		0.0309201	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57045619	57045620	rs1167514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs1167514-A	0.669971	4E-10		0.0280789	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57045619	57045620	rs1167514	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q13		rs1167514-A	0.669971	2E-8		0.025164	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57045619	57045620	rs1167514	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs1167514-?	NR	1E-10		0.009174	[0.0064-0.0119] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs289703-C	0.702334	2E-15		0.0357331	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	1E-18		0.0377044	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	1E-12		0.0289633	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	6E-23		0.039104	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-19		0.0365497	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-22		0.0388015	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	9E-17		0.0340162	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-24		0.041371	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q13		rs289703-C	0.70233	9E-21		0.0374554	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	8E-23		0.0394507	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q13		rs289703-C	0.702334	7E-17		0.0374702	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	5E-18		0.0356805	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	4E-21		0.0374294	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	5E-20		0.0367505	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-13		0.0299582	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	1E-23		0.0397755	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-16		0.033441	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	4E-20		0.0384396	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	3E-25		0.0415555	[0.034-0.049] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-25		0.0423314	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	8E-20		0.0392596	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	3E-15		0.0335757	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	6E-14		0.0307172	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	7E-20		0.0380689	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	2E-24		0.0407075	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	8E-20		0.0365297	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
1020	chr16	57048117	57048118	rs289703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q13		rs289703-C	0.702337	1E-16		0.034255	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1020	chr16	57052582	57052583	rs116857878	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	NLRC5	rs116857878-C	0.979652	1E-8		0.0412261	[0.027-0.055] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr16	57058581	57058582	rs821470	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	16q13	NLRC5	rs821470-A	NR	3E-6		1.25	[NR]	Affymetrix [745006]	N
1020	chr16	57058973	57058974	rs11644125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16q13		rs11644125-T	NR	4E-13		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q13	NLRC5	rs11644125-T	0.600206	4E-16		0.018404689	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q13	NLRC5	rs11644125-T	0.600183	9E-11		0.014718872	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q13	NLRC5	rs11644125-C	0.399881	8E-17		0.018838488	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs11644125-T	0.505864	3E-19				Affymetrix, Illumina [24649327] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q13	NR	rs11644125-T	0.59737	6E-21		0.017778	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs11644125-T	0.537064	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q13	NR	rs11644125-T	0.598171	3E-13		0.014464	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs11644125-T	0.531734	7E-22				Affymetrix, Illumina [23467995] (imputed)	N
1020	chr16	57058973	57058974	rs11644125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q13	NR	rs11644125-T	0.597948	5E-24		0.019445	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1020	chr16	57059483	57059484	rs16965150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs16965150-T	NR	1E-17		0.0653	[0.05-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57059483	57059484	rs16965150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs16965150-T	NR	2E-11		0.0513	[0.036-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57060723	57060724	rs13339199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs13339199-A	NR	7E-20		0.0508	[0.04-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57060723	57060724	rs13339199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs13339199-A	NR	2E-12		0.0394	[0.028-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57061188	57061189	rs291040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q13		rs291040-C	NR	4E-13		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1020	chr16	57061188	57061189	rs291040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q13		rs291040-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1020	chr16	57064323	57064324	rs111233885	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q13		rs111233885-C	0.555706	1E-8		0.0249958	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1020	chr16	57069649	57069650	rs1684578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q13		rs1684578-T	NR	2E-13		0.0126	[0.0093-0.0159] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q13		rs7192652-G	NR	2E-17		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	16q13		rs7192652-A	0.522	2E-11				Affymetrix [10369434] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16q13	NLRC5	rs7192652-G	0.478502	5E-25		0.02300379	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q13	NLRC5	rs7192652-G	0.478463	2E-24		0.022626134	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q13	NLRC5	rs7192652-G	0.478481	7E-23		0.02190371	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q13	NLRC5	rs7192652-G	0.478474	5E-20		0.020348271	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs7192652-G	0.53327	1E-27				Affymetrix, Illumina [23472807] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q13	NR	rs7192652-G	0.480623	4E-31		0.022219	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs7192652-G	0.535469	2E-22				Affymetrix, Illumina [19872809] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q13	NR	rs7192652-G	0.479159	5E-22		0.019291	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q13		rs7192652-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1020	chr16	57075179	57075180	rs7192652	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16q13	NLRC5	rs7192652-G	0.4788	2E-14		0.02774133	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1020	chr16	57075780	57075781	rs289727	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs289727-?	NR	7E-21		0.008578	[0.0065-0.0107] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57076114	57076115	rs158482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs158482-T	0.0168054	3E-10		0.101099	[0.07-0.133] unit increase	NR [11722792] (imputed)	N
1020	chr16	57076114	57076115	rs158482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs158482-T	0.0167663	3E-12		0.111937	[0.081-0.143] unit increase	NR [11722792] (imputed)	N
1020	chr16	57076114	57076115	rs158482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs158482-T	0.0167663	7E-19		0.14018	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
1020	chr16	57076114	57076115	rs158482	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs158482-T	0.0167663	4E-11		0.10278	[0.072-0.133] unit increase	NR [11722792] (imputed)	N
1020	chr16	57076114	57076115	rs158482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs158482-G	NR	3E-45		0.1367	[0.12-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57076114	57076115	rs158482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs158482-G	NR	3E-30		0.111	[0.092-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57076975	57076976	rs289728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs289728-C	NR	2E-29		0.0354	[0.029-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57076975	57076976	rs289728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs289728-C	NR	4E-18		0.0274	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57077093	57077094	rs8062446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q13	NLRC5	rs8062446-T	0.374809	1E-9		0.014005484	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr16	57077093	57077094	rs8062446	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q13	NLRC5	rs8062446-T	NR	4E-9		1.0878	NR	Affymetrix, Illumina [8278136] (imputed)	N
1020	chr16	57078762	57078763	rs118092024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs118092024-C	NR	1E-34		0.0867	[0.073-0.101] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57078762	57078763	rs118092024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs118092024-C	NR	1E-19		0.0644	[0.05-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57083352	57083353	rs72780017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs72780017-G	NR	4E-11		0.0316	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57096097	57096098	rs79546662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs79546662-T	NR	7E-30		0.0698	[0.058-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57096097	57096098	rs79546662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs79546662-T	NR	6E-17		0.0515	[0.039-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57101339	57101340	rs7190199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs7190199-C	NR	4E-12		0.0405	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57101339	57101340	rs7190199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs7190199-C	NR	1E-9		0.0356	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57107425	57107426	rs117551921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117551921-A	NR	1E-9		0.0489	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57111415	57111416	rs77424003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs77424003-A	NR	6E-16		0.0732	[0.056-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57111415	57111416	rs77424003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs77424003-A	NR	3E-10		0.0572	[0.039-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57112288	57112289	rs66807230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs66807230-T	NR	6E-32		0.0694	[0.058-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57112288	57112289	rs66807230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs66807230-T	NR	3E-20		0.0546	[0.043-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr16	57118207	57118208	rs27190	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q13	CETP	rs27190-?	NR	1E-10		0.005287	[0.0034-0.0072] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1020	chr16	57118871	57118872	rs75736857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs75736857-T	NR	6E-18		0.0635	[0.049-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57118871	57118872	rs75736857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs75736857-T	NR	3E-11		0.0491	[0.035-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1020	chr16	57128387	57128388	rs8056241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs8056241-A	NR	5E-12		0.0348	[0.025-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr16	57151853	57151854	rs8058541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs8058541-T	NR	1E-17		0.0238	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr16	57151853	57151854	rs8058541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs8058541-T	NR	2E-13		0.0204	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr16	57161019	57161020	rs117892711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q13		rs117892711-C	0.981338	2E-11		0.102284	[0.072-0.132] unit decrease	NR [11722792] (imputed)	N
1021	chr16	57161019	57161020	rs117892711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q13		rs117892711-C	0.981326	1E-11		0.102764	[0.073-0.133] unit decrease	NR [11722792] (imputed)	N
1021	chr16	57161019	57161020	rs117892711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q13		rs117892711-C	0.981326	3E-12		0.104884	[0.075-0.134] unit decrease	NR [11722792] (imputed)	N
1021	chr16	57180535	57180536	rs113552373	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	16q13		rs113552373-?	NR	5E-9				Illumina [1128286]	N
1021	chr16	57180535	57180536	rs113552373	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	16q13		rs113552373-?	NR	1E-9				Illumina [1128286]	N
1021	chr16	57220015	57220016	rs7186799	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q13	FAM192A	rs7186799-A	0.562484	4E-21		0.0185871	[0.015-0.022] unit increase	Affymetrix [NR] (imputed)	N
1021	chr16	57224562	57224563	rs117250566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117250566-A	NR	4E-42		0.1198	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr16	57224562	57224563	rs117250566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q13	NR	rs117250566-A	NR	3E-30		0.1008	[0.084-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr16	57251570	57251571	rs117168204	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q13	RSPRY1	rs117168204-A	0.0102189581820965	2E-6	(G_Collinsella_HB)	1.29218	[0.76-1.83] unit decrease	Illumina [7711310] (imputed)	N
1021	chr16	57260855	57260857	rs532552327	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	16q13	RSPRY1	rs532552327-CAG	0.9972	2E-6		0.5488	[0.32-0.78] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1022	chr16	57288195	57288196	rs80305714	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	16q13	ARL2BP	rs80305714-?	NR	8E-9		0.02887	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1022	chr16	57292131	57292132	rs7194319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q13	NR	rs7194319-T	0.0743102	2E-12				Affymetrix, Illumina [21126107] (imputed)	N
1022	chr16	57297311	57297312	rs60403102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q13		rs60403102-A	NR	2E-8		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1022	chr16	57300832	57300832	rs143095956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	16q13		rs143095956-CT	NR	2E-14		0.0265	[0.02-0.033] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1022	chr16	57301604	57301605	rs4784786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	16q13		rs4784786-T	0.228771	1E-13		0.0319304	[0.024-0.04] unit increase	Illumina [13477028] (imputed)	N
1022	chr16	57303193	57303194	rs11640439	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	16q13	PLLP	rs11640439-A	0.09	3E-6		0.24	[0.14-0.34] unit increase	Illumina [2380486] (imputed)	N
1022	chr16	57305388	57305389	rs75075448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	16q13	NR	rs75075448-C	0.756476	1E-10		0.030626	[0.021-0.04] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
1022	chr16	57308422	57308423	rs11645157	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q13	PLLP	rs11645157-T	0.505227	5E-23		0.0186404	[0.015-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1022	chr16	57318077	57318078	rs117932065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q13	NR	rs117932065-A	NR	6E-12		0.0481	[0.034-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr16	57322455	57322458	rs775671913	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	16q13	PLLP	rs775671913-CTAA	0.9987	7E-6		1.0815	[0.61-1.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1022	chr16	57342193	57342194	rs1787784	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CX3CL1	5,350 Icelandic ancestry individuals	NA	16q21		rs1787784-G	0.4116	8E-13		0.131063	[0.095-0.167] unit increase	Illumina [7506463] (imputed)	N
1022	chr16	57344314	57344315	rs71152258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q21		rs71152258-A	NR	3E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1022	chr16	57344314	57344315	rs71152258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q21		rs71152258-A	0.78517	8E-11		0.01869592	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr16	57344314	57344315	rs71152258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q21		rs71152258-A	0.78518	5E-9		0.016893338	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr16	57344314	57344315	rs71152258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q21		rs71152258-A	0.785171	6E-10		0.017909702	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr16	57349345	57349346	rs948705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs948705-T	0.801742	3E-10				Affymetrix, Illumina [24332387] (imputed)	N
1022	chr16	57349345	57349346	rs948705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q21	NR	rs948705-T	0.848055	1E-12		0.018833	[0.014-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1022	chr16	57349345	57349346	rs948705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q21	NR	rs948705-T	0.848109	1E-11		0.01795	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1022	chr16	57349345	57349346	rs948705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs948705-T	0.802598	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
1022	chr16	57349345	57349346	rs948705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q21	NR	rs948705-T	0.848125	2E-14		0.020224	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1022	chr16	57381352	57381353	rs113283269	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	16q21	NR	rs113283269-C	0.96	2E-6		0.58	[NR]	Affymetrix [87696888] (imputed)	N
1022	chr16	57383405	57383406	rs4784797	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (fever)	112 Japanese ancestry female cases, 5,622 Japanese ancestry female controls	157 Japanese ancestry female cases, 5,457 Japanese ancestry female controls	16q21	NR	rs4784797-C	0.880238975	2E-6		0.53531784	[0.31-0.76] unit decrease	Affymetrix [536506]	N
1022	chr16	57388729	57388730	rs223883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL22	5,350 Icelandic ancestry individuals	NA	16q21		rs223883-G	0.2414	1E-22		0.207805	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
1022	chr16	57388729	57388730	rs223883	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	16q21	PLLP, CCL22	rs223883-?	NR	2E-7		1.15	[1.09-1.21]	Illumina [at least 5000000] (imputed)	N
1022	chr16	57390477	57390478	rs669763	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q21	CCL22	rs669763-C	0.521	3E-15		1.123	[1.09-1.15]	Illumina [11270530] (imputed)	N
1022	chr16	57392240	57392241	rs223889	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q21	CCL22, PLLP	rs223889-?	NR	1E-8		1.21	[1.13-1.29]	Illumina [at least 5000000] (imputed)	N
1022	chr16	57392240	57392241	rs223889	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16q21	CCL22	rs223889-A	0.29	2E-6		1.06	[1.04-1.09]	Illumina [161311]	N
1022	chr16	57392732	57392733	rs4359426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q21	NR	rs4359426-C	NR	3E-15		0.0459	[0.035-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr16	57392732	57392733	rs4359426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q21	NR	rs4359426-C	NR	2E-12		0.0412	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr16	57394392	57394393	rs41398344	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q21	CCL22	rs41398344-C	0.01	4E-32	(C-C motif chemokine 22, CCL22.3508.78.3)	1.4	[1.16-1.64] unit decrease	Affymetrix [10572788] (imputed)	N
1022	chr16	57394861	57394862	rs223819	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	16q21	CCL22	rs223819-T	0.91	3E-8				NR [> 9500000] (imputed)	N
1022	chr16	57408777	57408778	rs683544	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	16q21		rs683544-T	0.58	3E-86		0.1926	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1023	chr16	57412801	57412802	rs671623	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q21	CX3CL1	rs671623-C	0.429375	9E-11	(CX3CL1, 2827_23_2)	0.1555996	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1023	chr16	57413659	57413660	rs62037084	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q21	CX3CL1	rs62037084-T	0.006	3E-15	(Fractalkine, CX3CL1.2827.23.2)	1.22	[0.93-1.51] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr16	57414000	57414001	rs670211	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	16q21	CX3CL1	rs670211-G	0.41	7E-25		0.18	unit increase	Illumina [5270624] (imputed)	N
1023	chr16	57418724	57418725	rs8102	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q21	NR	rs8102-T	0.724	1E-16	(C-C motif chemokine 17, CCL17.3519.3.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1023	chr16	57418724	57418725	rs8102	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	16q21	NR	rs8102-?		2E-6	(CCL22)	0.2265	[NR] unit decrease	Illumina [NR]	N
1023	chr16	57418986	57418987	rs2239354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q21	CX3CL1	rs2239354-A	0.083741	4E-9		0.023590062	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr16	57418986	57418987	rs2239354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q21	CX3CL1	rs2239354-A	0.083757	5E-12		0.027704053	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr16	57426935	57426936	rs11076190	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	16q21	CX3CL1	rs11076190-?		3E-6		0.738	[NR] unit increase	Illumina [6030476] (imputed)	N
1023	chr16	57442190	57442191	rs4396523	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	16q21		rs4396523-C	0.07726	9E-49		0.515401	[0.45-0.58] unit increase	Illumina [7506463] (imputed)	N
1023	chr16	57442335	57442335	rs113022368	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q21	CCL17	rs113022368-AT	0.078	2E-21	(C-C motif chemokine 17, CCL17.3519.3.2)	0.45	[0.35-0.55] unit increase	Affymetrix [10572788] (imputed)	N
1023	chr16	57442967	57442968	rs9302690	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q21	CCL17	rs9302690-A	0.08375125	4E-15	(EA, C-C motif chemokine 17)	0.6212	[0.47-0.77] unit increase	Affymetrix [509946]	N
1023	chr16	57443145	57443146	rs223896	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Thymus and reactivation regulated chemokine levels	8,318 European ancestry individuals	NA	16q21	CCL17	rs223896-A	0.41	3E-29		0.12	[0.099-0.141] unit decrease	Illumina [~ 9000000] (imputed)	N
1023	chr16	57444001	57444002	rs16956811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q21		rs16956811-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1023	chr16	57444001	57444002	rs16956811	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q21	CCL17	rs16956811-T	0.9221875	6E-30	(CCL17, 3519_3_2)	0.52260995	[0.43-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1023	chr16	57451191	57451192	rs223829	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	16q21		rs223829-C	0.2749	2E-13		0.157338	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
1023	chr16	57497438	57497439	rs62037146	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL22	5,350 Icelandic ancestry individuals	NA	16q21		rs62037146-T	0.01521	1E-60		1.21165	[1.07-1.36] unit decrease	Illumina [7506463] (imputed)	N
1023	chr16	57497438	57497439	rs62037146	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q21	CCL22	rs62037146-C	0.9840625	7E-34	(CCL22, 3508_78_3)	1.174273	[0.99-1.36] unit increase	Illumina [> 1000000] (imputed)	N
1024	chr16	57542241	57542242	rs140164052	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q21	CCDC102A	rs140164052-G	0.968187	3E-10		0.0354054	[0.024-0.046] unit increase	Affymetrix [NR] (imputed)	N
1024	chr16	57563670	57563671	rs8052123	23137000	Lin HJ	2012-11-09	Ophthalmic Genet	Novel susceptibility genes associated with diabetic cataract in a Taiwanese population.	Cataracts in type 2 diabetes	109 Han Chinese ancestry cases, 649 Han Chinese ancestry controls	NA	16q21	CCDC102A	rs8052123-C	NR	5E-6				Illumina [517401]	N
1024	chr16	57567405	57567406	rs739815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q21	NR	rs739815-G	0.291831	4E-11		0.013427	[0.0094-0.0174] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1024	chr16	57567405	57567406	rs739815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q21		rs739815-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1024	chr16	57567623	57567624	rs739816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q21		rs739816-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1024	chr16	57570560	57570561	rs9928015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q21	NR	rs9928015-T	0.302009	2E-11		0.014985	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1024	chr16	57570561	57570562	rs9928663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs9928663-T	0.353543	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
1024	chr16	57570703	57570704	rs9939347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs9939347-G	0.351545	2E-12				Affymetrix, Illumina [20825802] (imputed)	N
1024	chr16	57573728	57573729	rs4783993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	16q21		rs4783993-A	NR	2E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1024	chr16	57573728	57573729	rs4783993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs4783993-A	0.328	9E-11				Affymetrix, Illumina [24246363] (imputed)	N
1024	chr16	57573728	57573729	rs4783993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs4783993-A	0.32228	1E-11				Affymetrix, Illumina [19905671] (imputed)	N
1024	chr16	57576558	57576558	rs753910330	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16q21	NR	rs753910330-D	0.300809	4E-11		0.014427	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1024	chr16	57578965	57578966	rs9931050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q21		rs9931050-A	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1024	chr16	57578965	57578966	rs9931050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q21	GPR114	rs9931050-A	0.30074	1E-10		0.015753193	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr16	57578965	57578966	rs9931050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q21	GPR114	rs9931050-A	0.30068	7E-11		0.0137814	[0.0094-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr16	57578965	57578966	rs9931050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q21	GPR114	rs9931050-A	0.300676	8E-12		0.016314605	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr16	57578965	57578966	rs9931050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16q21	NR	rs9931050-A	0.303503	7E-11		0.012856	[0.009-0.0167] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1024	chr16	57580228	57580229	rs4783994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q21	GPR114	rs4783994-A	0.300412	3E-11		0.016350988	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr16	57580477	57580478	rs4783997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q21		rs4783997-G	NR	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1024	chr16	57584931	57584932	rs2404450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q21		rs2404450-T	NR	1E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1024	chr16	57596551	57596552	rs1859259	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	16q21	GPR114	rs1859259-T	0.58	1E-9		0.025	NR unit decrease	Illumina [9591901] (imputed)	N
1024	chr16	57596551	57596552	rs1859259	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	16q21	GPR114	rs1859259-T	0.3	1E-11		0.008	unit increase	NR [NR]	N
1024	chr16	57653532	57653533	rs11859370	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	16q21	intergenic	rs11859370-T	NR	2E-8		1.21	[1.13-1.29]	Illumina [20370935] (imputed)	N
1024	chr16	57653532	57653533	rs11859370	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	16q21	NR	rs11859370-T	0.95	2E-10		1.13	[1.09-1.17]	Illumina [20370935] (imputed)	N
1024	chr16	57654575	57654576	rs11863709	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	16q21	NR	rs11863709-C	NR	3E-11		1.14	[1.10-1.19]	Affymetrix, Illumina [29235255] (imputed)	N
1024	chr16	57654575	57654576	rs11863709	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	16q21	GPR56	rs11863709-C	NR	7E-7		1.21	[NR]	Illumina [20370935] (imputed)	N
1024	chr16	57654575	57654576	rs11863709	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	16q21	GPR56	rs11863709-C	0.96	2E-11		1.16	[1.11-1.21]	Illumina [20370935] (imputed)	N
1025	chr16	57678569	57678570	rs200646658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Intracerebral hemorrhage	1,935 European ancestry cases, 471,578 European ancestry controls, 1,456 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	16q21		rs200646658-C	NR	5E-9		1.8308	[1.22-2.44] unit increase	Affymetrix, Illumina [25841532] (imputed)	N
1025	chr16	57682699	57682700	rs138026745	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q21	GPR56	rs138026745-G	0.974478	5E-8		0.0336451	[0.022-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1025	chr16	57686302	57686303	rs2004823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q21		rs2004823-C	NR	2E-8		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1026	chr16	57903289	57903290	rs149839710	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		16q21	Intergenic	rs149839710-A	0.002	9E-6	(liability model)	1.0	[0.55-1.45] unit increase	NR [19725427] (imputed)	N
1027	chr16	57934079	57934080	rs146087183	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	16q21	CNGB1	rs146087183-?	NR	3E-6				Affymetrix, Illumina [15642250] (imputed)	N
1027	chr16	57959237	57959238	rs57940640	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	16q21	CNGB1	rs57940640-?		9E-6		0.552	[NR] unit increase	Illumina [6030476] (imputed)	N
1027	chr16	57970864	57970865	rs6499924	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	16q21	CNGB1	rs6499924-?		1E-6				Illumina [2668805]	N
1027	chr16	57975577	57975578	rs6499927	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs6499927-A	0.02787	5E-10	(RAB14)	0.01833	NR unit increase	Illumina [1671387] (imputed)	N
1027	chr16	57975623	57975624	rs6499928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs6499928-A	0.03659	5E-9	(RAB14)	0.01739	NR unit increase	Illumina [1671387] (imputed)	N
1027	chr16	57993840	57993841	rs61745888	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	16q21	NR	rs61745888-T	NR	7E-6		3.08	NR	Illumina [6470615] (imputed)	N
1027	chr16	58022135	58022136	rs12600304	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	16q21	TEPP	rs12600304-T		3E-6		1.6231	[0.94-2.3] unit increase	Illumina [7576458] (imputed)	N
1027	chr16	58022624	58022625	rs8044657	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	16q21	TEPP	rs8044657-G	0.9	1E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [6224355] (imputed)	N
1027	chr16	58030052	58030053	rs3743553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q21	NR	rs3743553-C	0.74566	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
1027	chr16	58063512	58063513	rs11648508	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	16q21	MMP15	rs11648508-T	0.6832	1E-6		0.0132	[0.0079-0.0185] unit increase	Affymetrix [19819130] (imputed)	N
1027	chr16	58063512	58063513	rs11648508	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q21	MMP15	rs11648508-T	0.6832	1E-38		0.0332	[0.028-0.038] unit increase	Affymetrix [19819130] (imputed)	N
1028	chr16	58065458	58065459	rs4784886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q21		rs4784886-?	NR	3E-56				NR [~ 8900000] (imputed)	N
1028	chr16	58070963	58070964	rs12928392	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	16q21	MMP15	rs12928392-T	0.76	1E-10		6.44	z-score increase	Affymetrix [4312306] (imputed)	N
1028	chr16	58071091	58071092	rs12924215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q21	NR	rs12924215-T	NR	1E-29		0.0327	[0.027-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1028	chr16	58074209	58074210	rs2304488	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16q21	MMP15	rs2304488-A	0.76365	2E-40		0.00786031	[0.0067-0.0091] unit increase	Affymetrix [13995440] (imputed)	N
1028	chr16	58075281	58075282	rs12447804	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	16q21	MMP15	rs12447804-?	NR	4E-8	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
1028	chr16	58075281	58075282	rs12447804	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q21	MMP15	rs12447804-T	0.21	4E-8	(FEV1/FVC)	0.038	[0.024-0.052] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	6E-9	(-174 ms)	0.142803	[0.093-0.193] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	4E-8	(-244 ms)	0.140246	[0.09-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	4E-8	(-190 ms)	0.141656	[0.092-0.192] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	3E-8	(-182 ms)	0.140585	[0.091-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	3E-8	(-172 ms)	0.138357	[0.089-0.188] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	2E-8	(-202 ms)	0.142618	[0.093-0.193] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	2E-8	(-188 ms)	0.144428	[0.094-0.194] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	2E-8	(-176 ms)	0.140062	[0.09-0.19] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	1E-8	(-186 ms)	0.144617	[0.095-0.195] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58084441	58084442	rs143721880	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	MMP15	rs143721880-A	0.986968	1E-8	(-184 ms)	0.145814	[0.096-0.196] unit decrease	Affymetrix [10000000] (imputed)	N
1028	chr16	58085881	58085882	rs12929002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q21		rs12929002-A	NR	4E-31		0.0249	[0.021-0.029] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1028	chr16	58097356	58097357	rs9926693	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	16q21	MMP15	rs9926693-?	NR	2E-9		0.0016	[0.001-0.0022] unit decrease	Affymetrix [21347608] (imputed)	N
1028	chr16	58097356	58097357	rs9926693	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	16q21	MMP15	rs9926693-?	NR	8E-15		0.0034	[0.0024-0.0044] unit decrease	Affymetrix [21347608] (imputed)	N
1028	chr16	58097599	58097600	rs12926803	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	16q21	MMP15	rs12926803-C	0.24	4E-8	(conditional on rs8044657)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1028	chr16	58115033	58115034	rs7191378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q21		rs7191378-G	0.31	1E-8				NR [NR] (imputed)	N
1028	chr16	58115033	58115034	rs7191378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q21		rs7191378-G	0.31	2E-8		0.009	% increase	NR [NR] (imputed)	N
1028	chr16	58115033	58115034	rs7191378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	16q21		rs7191378-G	0.31	2E-6		0.01	U/L decrease	NR [NR] (imputed)	N
1028	chr16	58132534	58132535	rs74470468	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	16q21		rs74470468-?	NR	2E-6		1.53497	[1.36-1.71]	NR [663102]	N
1028	chr16	58141932	58141933	rs74019792	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	16q21	NR	rs74019792-A	0.07611	9E-7		0.2801	[0.17-0.39] unit increase	Illumina [10677593] (imputed)	N
1028	chr16	58172669	58172670	rs76866523	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q21	NR	rs76866523-A	NR	1E-9		0.0409	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1028	chr16	58173523	58173524	rs191291131	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	16q21	C16orf80, CSNK2A2	rs191291131-T	NR	2E-6		2.18943	[1.28-3.1] unit increase	Illumina [at least 950000] (imputed)	N
1029	chr16	58209273	58209274	rs74019828	24795349	Saxena R	2014-05-03	Circ Cardiovasc Genet	Genome-wide association study identifies variants in casein kinase II (CSNK2A2) to be associated with leukocyte telomere length in a Punjabi Sikh diabetic cohort.	Telomere length	842 Punjabi Sikh ancestry type 2 diabetes cases, 774 Punjabi Sikh ancestry controls	1,108 Punjabi Sikh ancestry type 2 diabetes cases, 1,289 Punjabi Sikh ancestry controls, 2,952 European ancestry myocardial infarction cases and healthy controls, 10,033 European ancestry individuals	16q21	CSNK2A2	rs74019828-A	0.16	5E-8	(Punjabi Sikhs)	0.38	[0.26-0.50] unit decrease	Illumina [5904251] (imputed)	N
1029	chr16	58240734	58240735	rs8063767	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	16q21	NR	rs8063767-T	0.01318	6E-7		2.626	[1.07-4.19] unit decrease	Illumina [at least 567677] (imputed)	N
1029	chr16	58254447	58254448	rs2550374	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	16q21	CSNK2A2, CCDC113	rs2550374-?	0.51	2E-8		1.2345679		Illumina [776516]	N
1029	chr16	58267471	58267472	rs2550333	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q21	CSNK2A2, CCDC113	rs2550333-?	NR	3E-6		1.13	[1.07-1.18]	Illumina [at least 5000000] (imputed)	N
1029	chr16	58280077	58280078	rs2731763	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q21	CSNK2A2, CCDC113	rs2731763-?	NR	1E-7	(Hispanic)	1.31	[1.19-1.45]	Illumina [at least 5000000] (imputed)	N
1030	chr16	58327645	58327646	rs2288012	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls		PRSS54	rs2288012-A		4E-6		1.12	[1.07-1.17]	Illumina [644674]	N
1030	chr16	58372983	58372984	rs7199896	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	16q21	PRSS54	rs7199896-T	0.06	5E-6		1.5873016	[1.41-1.76]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1031	chr16	58459925	58459926	rs4784934	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	16q21	GINS3	rs4784934-?	NR	6E-7				Affymetrix, Illumina [22000000] (imputed)	N
1031	chr16	58459925	58459926	rs4784934	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16q21	CNOT1	rs4784934-A	0.254	6E-9		0.67	[0.43-0.91] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1031	chr16	58462626	58462627	rs1424077	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	16q21	GINS3	rs1424077-G	0.274	6E-9		0.033	[0.021-0.045] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1031	chr16	58464339	58464340	rs2042400	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	16q21	RP11-481J2.2	rs2042400-T	0.4	4E-9	(SAI QRST)	0.07	[0.048-0.092] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	3E-18	(248 ms)	0.0507835	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	2E-39	(158 ms)	0.0757213	[0.064-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	2E-38	(164 ms)	0.0733927	[0.062-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	2E-31	(144 ms)	0.0673724	[0.056-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	1E-38	(166 ms)	0.0743138	[0.063-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	1E-37	(160 ms)	0.0727378	[0.061-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58468210	58468211	rs4784939	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	GINS3	rs4784939-T	0.340983	1E-17	(250 ms)	0.049947	[0.038-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58540874	58540875	rs17821543	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q21	NR	rs17821543-A	NR	4E-9		0.028	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr16	58544294	58544295	rs246192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q21	NR	rs246192-G	0.479055	1E-16		0.00665627	[0.005-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
1031	chr16	58544294	58544295	rs246192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q21	NR	rs246192-G	0.480488	1E-13		0.00798652	[0.0057-0.0103] unit increase	Affymetrix [16582621] (imputed)	N
1031	chr16	58544294	58544295	rs246192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q21	NR	rs246192-G	0.479055	9E-17		0.00741878	[0.0056-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1031	chr16	58544294	58544295	rs246192	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q21	NR	rs246192-G	0.480488	8E-13		0.00853882	[0.0061-0.011] unit increase	Affymetrix [16582614] (imputed)	N
1031	chr16	58545425	58545426	rs42945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q21	NR	rs42945-A	0.488387	4E-8		0.0162178	[0.01-0.022] unit increase	Affymetrix [16577313] (imputed)	N
1031	chr16	58545425	58545426	rs42945	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	16q21	CNOT1, NDRG4, SETD6, SLC38A7, SNORA46, SNORA76A	rs42945-?	NR	2E-10		1.0649627	[1.05-1.08]	Illumina [8000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	16q21		rs150728296-C	0.75	3E-28		0.074	[0.06-0.088] unit increase	Affymetrix [NR]	N
1031	chr16	58547511	58547511	rs150728296	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	16q21		rs150728296-C	0.75	1E-20		0.064	[0.05-0.078] unit increase	Affymetrix [NR]	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	9E-30	(228 ms)	0.0709317	[0.058-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	9E-24	(236 ms)	0.0627253	[0.05-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	9E-23	(110 ms)	0.0626946	[0.05-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-52	(180 ms)	0.0944776	[0.082-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-50	(192 ms)	0.0932196	[0.081-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-42	(214 ms)	0.0844299	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-34	(134 ms)	0.0772353	[0.065-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-32	(132 ms)	0.075148	[0.063-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	8E-20	(92 ms)	0.0571739	[0.045-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-9	(56 ms)	0.037332	[0.025-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-52	(178 ms)	0.0951823	[0.083-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-49	(176 ms)	0.0923398	[0.08-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-46	(206 ms)	0.0884893	[0.076-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-44	(158 ms)	0.0873532	[0.075-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-41	(152 ms)	0.0842902	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-30	(126 ms)	0.0729929	[0.061-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-29	(128 ms)	0.0717608	[0.059-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-27	(232 ms)	0.0671256	[0.054-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	7E-26	(120 ms)	0.0668082	[0.054-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	6E-52	(194 ms)	0.094859	[0.082-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	6E-49	(188 ms)	0.0925993	[0.08-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	6E-41	(216 ms)	0.0830717	[0.07-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-49	(198 ms)	0.0920105	[0.079-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-49	(172 ms)	0.0925799	[0.08-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-49	(168 ms)	0.0930447	[0.081-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-46	(162 ms)	0.0897573	[0.077-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-44	(156 ms)	0.0879111	[0.075-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-35	(222 ms)	0.077965	[0.065-0.091] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-18	(88 ms)	0.0539356	[0.041-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-14	(78 ms)	0.0481096	[0.036-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	5E-13	(80 ms)	0.0464513	[0.034-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-49	(184 ms)	0.0922276	[0.08-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-41	(150 ms)	0.0852937	[0.073-0.098] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-29	(122 ms)	0.0714257	[0.059-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-24	(116 ms)	0.0651385	[0.053-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-22	(238 ms)	0.0604885	[0.048-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-20	(98 ms)	0.0584996	[0.046-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-16	(82 ms)	0.0521059	[0.04-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	4E-11	(62 ms)	0.0421381	[0.03-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-51	(196 ms)	0.0939379	[0.081-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-50	(170 ms)	0.09348	[0.081-0.106] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-48	(174 ms)	0.0919349	[0.079-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-47	(200 ms)	0.0904779	[0.078-0.103] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-47	(166 ms)	0.0917514	[0.079-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-47	(164 ms)	0.0912333	[0.079-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-44	(160 ms)	0.0875171	[0.075-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-43	(208 ms)	0.0866853	[0.074-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-32	(226 ms)	0.0738672	[0.061-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-30	(124 ms)	0.0731926	[0.061-0.086] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	3E-11	(68 ms)	0.0418119	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-48	(190 ms)	0.0917164	[0.079-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-46	(202 ms)	0.0894949	[0.077-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-42	(154 ms)	0.0865041	[0.074-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-42	(148 ms)	0.086697	[0.074-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-39	(218 ms)	0.0813806	[0.069-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-38	(144 ms)	0.0822234	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-38	(140 ms)	0.0825442	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-38	(138 ms)	0.0825426	[0.07-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-37	(220 ms)	0.0792778	[0.067-0.092] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-37	(142 ms)	0.0811807	[0.069-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-36	(136 ms)	0.080591	[0.068-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-34	(224 ms)	0.0764127	[0.064-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-28	(230 ms)	0.0693737	[0.057-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-26	(114 ms)	0.0679238	[0.055-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-24	(234 ms)	0.0644654	[0.052-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-23	(118 ms)	0.0636735	[0.051-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-21	(108 ms)	0.0599312	[0.047-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-19	(96 ms)	0.0572881	[0.045-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-19	(90 ms)	0.0573205	[0.045-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-19	(240 ms)	0.0566143	[0.044-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-16	(74 ms)	0.0528921	[0.04-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-12	(70 ms)	0.0455503	[0.033-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	2E-10	(66 ms)	0.0405358	[0.028-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-50	(186 ms)	0.0945656	[0.082-0.107] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-48	(182 ms)	0.0910095	[0.078-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-46	(204 ms)	0.0891606	[0.077-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-41	(212 ms)	0.0845293	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-41	(210 ms)	0.0844929	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-40	(146 ms)	0.0846662	[0.072-0.097] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-29	(130 ms)	0.0730168	[0.061-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-25	(112 ms)	0.0664256	[0.054-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-22	(100 ms)	0.0630058	[0.05-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-21	(106 ms)	0.0605221	[0.048-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-19	(94 ms)	0.057071	[0.045-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-17	(84 ms)	0.0538454	[0.041-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-16	(76 ms)	0.0528587	[0.04-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547511	58547511	rs150728296	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs150728296-C	0.752389	1E-10	(64 ms)	0.0405628	[0.028-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1031	chr16	58547857	58547858	rs246193	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q21	NDRG4	rs246193-C	0.470987	2E-12		0.00279723	[0.002-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1031	chr16	58547857	58547858	rs246193	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	16q21		rs246193-?	NR	1E-8		0.0171	NR unit increase	NR [4484088] (imputed)	N
1031	chr16	58549203	58549204	rs1646010	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q21	SETD6	rs1646010-C	0.2537	2E-9		0.1343	[0.09-0.178] mmHg increase	Affymetrix [NR] (imputed)	N
1031	chr16	58550051	58550052	rs185639574	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	16q21	SETD6	rs185639574-T	0.34	7E-27		2.53	[2.06-3] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1031	chr16	58553729	58553729	rs59247776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q21		rs59247776-CAATCA	NR	4E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1031	chr16	58559628	58559629	rs2241569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q21		rs2241569-C	NR	9E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1031	chr16	58566303	58566304	rs37060	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16q21	NR	rs37060-?	NR	4E-23		2.28374	[1.83-2.74] unit decrease	Illumina [26659972] (imputed)	N
1031	chr16	58566303	58566304	rs37060	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16q21	CNOT1	rs37060--A	0.2499	1E-13		0.1471	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1031	chr16	58566303	58566304	rs37060	22726844	Kim JW	2012-06-20	Am J Hum Genet	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	16q21	NDRG4, CNOT1	rs37060-?	NR	1E-7		1.52	[0.957-2.084] ms increase	Affymetrix [352228]	N
1031	chr16	58567237	58567238	rs37062	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16q21	NR	rs37062-?	NR	4E-23		2.28374	[1.83-2.74] unit decrease	Illumina [26659972] (imputed)	N
1031	chr16	58567237	58567238	rs37062	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	16q21	NDRG4	rs37062-A	0.72	1E-6	(QT interval)	6.09	[3.62-8.57] % s.d. increase	Illumina [306060]	N
1031	chr16	58567237	58567238	rs37062	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	16q21	GINS3, NDRG4, SLC38A7, GOT2, CNOT1	rs37062-G	0.24	3E-25		1.75	[1.41-2.09] msec decrease	Affymetrix, Illumina [up to 2543686] (imputed)	N
1031	chr16	58574252	58574253	rs246196	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16q21	NR	rs246196-?	NR	1E-22		2.264577	[1.81-2.72] unit decrease	Illumina [26659972] (imputed)	N
1031	chr16	58574252	58574253	rs246196	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	16q21	CNOT1	rs246196-C	0.259	2E-57		1.73	[1.51-1.95] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1031	chr16	58584771	58584772	rs7199856	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16q21	CNOT1	rs7199856-G	0.26	9E-15		0.56	[0.42-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1031	chr16	58584771	58584772	rs7199856	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16q21	CNOT1	rs7199856-G	0.2599	2E-12		0.5313	[0.38-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1031	chr16	58585368	58585369	rs7184114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q21		rs7184114-A	NR	6E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1031	chr16	58585368	58585369	rs7184114	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	16q21	CNOT1, SETD6, SNORA46, SNORA76A	rs7184114-?		2E-8		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1032	chr16	58601364	58601365	rs4471670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q21	NR	rs4471670-A	0.749162	2E-10		0.013527	[0.0094-0.0177] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1032	chr16	58602224	58602225	rs11867022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q21		rs11867022-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1032	chr16	58616996	58616997	rs34830321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q21	CNOT1	rs34830321-C	0.985981	6E-9		0.0480174	[0.032-0.064] unit increase	Affymetrix [NR] (imputed)	N
1032	chr16	58616996	58616997	rs34830321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q21	CNOT1	rs34830321-C	0.985968	3E-10		0.0539701	[0.037-0.071] unit increase	Affymetrix [NR] (imputed)	N
1032	chr16	58620884	58620885	rs950843	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	16q21	CNOT1	rs950843-T	0.758	1E-20		1.977	[1.56-2.39] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1032	chr16	58622177	58622178	rs7188697	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16q21		rs7188697-A	0.7424	3E-15		0.14104144	[0.11-0.18] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1032	chr16	58622177	58622178	rs7188697	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	16q21	NR	rs7188697-?	NR	1E-22		2.255709	[1.8-2.71] unit increase	Illumina [26659972] (imputed)	N
1032	chr16	58622177	58622178	rs7188697	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	16q21	NDRG4	rs7188697-A	0.74	7E-25		1.66	[1.20-2.12] ms increase	Affymetrix, Illumina [2557000] (imputed)	N
1032	chr16	58629324	58629326	rs57122392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q21	CNOT1	rs57122392-C	0.755978	2E-9		0.015735645	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1032	chr16	58631331	58631332	rs11866656	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q21	CNOT1	rs11866656-T	0.78	9E-10		6.12	z-score increase	Affymetrix [4311822] (imputed)	N
1032	chr16	58636870	58636871	rs7205071	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	16q21	CNOT1	rs7205071-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1032	chr16	58660690	58660691	rs4784053	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q21	CNOT1	rs4784053-T	0.531689	3E-12		0.00276747	[0.002-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
1032	chr16	58666711	58666712	rs863433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q21		rs863433-G	NR	7E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1032	chr16	58669907	58669908	rs11641947	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	16q21	CNOT1, SETD6, SNORA46, SNORA76A	rs11641947-?		4E-9		1.0869565	[1.05-1.11]	Affymetrix, Illumina [NR]	N
1032	chr16	58670852	58670853	rs112624357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16q21		rs112624357-G	NR	2E-11		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1032	chr16	58671814	58671815	rs12446487	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q21	NR	rs12446487-C	NR	1E-8		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1032	chr16	58680539	58680540	rs143052305	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q21		rs143052305-T	0.02713	7E-9		0.434	[0.29-0.58] unit increase	Illumina [18213821] (imputed)	N
1032	chr16	58681392	58681393	rs12325245	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	16q21	NR	rs12325245-?	NR	5E-9				Illumina [up to 5582932] (imputed)	N
1032	chr16	58681392	58681393	rs12325245	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q21	CNOT1	rs12325245-T	NR	6E-8	(EA)	1.0893246	[1.06-1.12]	Illumina [6627481] (imputed)	N
1032	chr16	58681392	58681393	rs12325245	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q21	CNOT1	rs12325245-T	NR	2E-7		1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
1032	chr16	58681392	58681393	rs12325245	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	16q21	CNOT1, SLC38A7	rs12325245-T	0.141	2E-8		1.0869565	[1.06-1.12]	Affymetrix, Illumina [9005918] (imputed)	N
1032	chr16	58684224	58684225	rs111784349	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs111784349-?	NR	2E-8		0.0039412	[-0.00186-0.00974] unit decrease	Affymetrix [25921788] (imputed)	N
1032	chr16	58684224	58684225	rs111784349	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	16q21	NDRG4, SETD6, CNOT1	rs111784349-?	NR	2E-8		0.0164916	[0.011-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1032	chr16	58686601	58686602	rs72792415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	16q21		rs72792415-A	0.793988	3E-8		0.0279123	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1032	chr16	58690963	58690964	rs12149056	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs12149056-A	0.1162	7E-8		0.4341	[0.28-0.59] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58693591	58693592	rs60388585	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs60388585-C	0.1454	3E-6		0.3447	[0.2-0.49] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58695138	58695139	rs60979655	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs60979655-T	0.1129	5E-8		0.4378	[0.28-0.59] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58696705	58696706	rs11648166	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs11648166-G	0.1178	2E-8		0.4401	[0.29-0.59] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58697890	58697891	rs6499965	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16q21	CNOT1, SLC38A7	rs6499965-?		5E-6	(African American)	0.14091316	[0.08-0.201] unit decrease	Illumina [13620258] (imputed)	N
1032	chr16	58699364	58699365	rs62065309	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	16q21	SLC38A7	rs62065309-?	NR	8E-6		4.457	[NR] z score decrease	Illumina [6737359] (imputed)	N
1032	chr16	58702540	58702541	rs76733922	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs76733922-C	0.1213	6E-8		0.4257	[0.27-0.58] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58703615	58703616	rs3784911	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs3784911-T	0.1191	4E-8		0.4353	[0.28-0.59] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58703775	58703776	rs12598355	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs12598355-C	0.1193	1E-7		0.4221	[0.27-0.58] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58704495	58704496	rs16960359	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	SLC38A7	rs16960359-A	0.1189	5E-8		0.4324	[0.28-0.59] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58707131	58707132	rs11639682	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs11639682-A	0.1204	8E-7		0.3938	[0.24-0.55] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58707627	58707628	rs59234479	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs59234479-A	0.1178	3E-6		0.3738	[0.22-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58708419	58708420	rs12448028	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	16q21	MOBP	rs12448028-?		1E-8				NR [7428630] (imputed)	N
1032	chr16	58708419	58708420	rs12448028	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16q21	TSC22D2	rs12448028-?		4E-8				NR [7428630] (imputed)	N
1032	chr16	58711531	58711532	rs2280399	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs2280399-A	0.1214	2E-6		0.3752	[0.22-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58712129	58712130	rs2280398	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs2280398-T	0.1213	2E-6		0.3795	[0.23-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1032	chr16	58714724	58714725	rs76195496	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	16q21	NR	rs76195496-?	NR	7E-6		2.3999	[0.91-3.89] unit increase	Illumina [at least 560000] (imputed)	N
1033	chr16	58731883	58731884	rs11647748	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs11647748-G	0.1185	3E-6		0.3743	[0.22-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1033	chr16	58732854	58732855	rs11643617	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs11643617-C	0.1234	2E-6		0.3767	[0.22-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1033	chr16	58733161	58733162	rs61041336	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	16q21	intergenic	rs61041336-G	0.8469	3E-6	(Case/control)	0.4512	[0.26-0.64] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1033	chr16	58735672	58735673	rs73549255	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	16q21	NR	rs73549255-A	0.1236	2E-6		0.3777	[0.22-0.53] unit increase	Illumina [~ 600000] (imputed)	N
1033	chr16	58752465	58752466	rs11076256	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q21	GOT2	rs11076256-C	0.963067	8E-42	(imidazole lactate)	0.812	[0.69-0.93] unit decrease	Illumina [13039987] (imputed)	N
1033	chr16	58752465	58752466	rs11076256	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q21	GOT2	rs11076256-C	0.963067	8E-27	(phenyllactate (PLA))	0.65	[0.53-0.77] unit decrease	Illumina [13039987] (imputed)	N
1033	chr16	58753994	58753995	rs12932751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q21		rs12932751-T	NR	2E-58		0.0653	[0.057-0.073] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1033	chr16	58759331	58759332	rs12600277	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	16q21	GOT2	rs12600277-?	0.16	3E-6		0.1399	[0.082-0.198] cm increase	Affymetrix [NR]	N
1033	chr16	58764854	58764855	rs73550818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	16q21		rs73550818-A	0.505483	8E-12		0.0244446	[0.017-0.031] unit increase	Illumina [13478956] (imputed)	N
1033	chr16	58764854	58764855	rs73550818	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q21	GOT2	rs73550818-?		3E-12		0.0295	[0.021-0.038] unit decrease	Illumina [31500000] (imputed)	N
1033	chr16	58764854	58764855	rs73550818	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	16q21	GOT2	rs73550818-?	NR	2E-12		0.02855	[0.021-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1033	chr16	58770896	58770897	rs11643959	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q21	GOT2, CDH8	rs11643959-T	0.91	9E-41		13.4	z-score increase	Affymetrix [4314223] (imputed)	N
1033	chr16	58776313	58776314	rs4784054	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q21	GOT2	rs4784054-A	0.11	2E-21	(phenyllactate (PLA))	0.035	[0.027-0.043] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1033	chr16	58801479	58801480	rs35844852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q21	NR	rs35844852-C	NR	5E-21		0.0591	[0.047-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr16	58801479	58801480	rs35844852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	16q21	NR	rs35844852-C	NR	4E-28		0.069	[0.057-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr16	58810949	58810950	rs8052889	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	16q21		rs8052889-?	0.05266	2E-8		0.01413	unit increase	NR [6200000] (imputed)	N
1033	chr16	58817727	58817728	rs142486101	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (attentional)	21,876 European ancestry individuals	NA	16q21	GOT2	rs142486101-G	0.0082	6E-7		0.283	[0.394-0.172] unit decrease	Illumina [11455070] (imputed)	N
1033	chr16	58829789	58829790	rs12709013	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	16q21	GOT2	rs12709013-T	0.44	3E-24	(phenyllactate (PLA)/phenylalanine)	0.027	[0.021-0.033] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1033	chr16	58834401	58834402	rs62064941	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q21	GOT2	rs62064941-A	0.962386	4E-8		0.0287494	[0.018-0.039] unit increase	Affymetrix [NR] (imputed)	N
1033	chr16	58838630	58838631	rs35317979	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	16q21		rs35317979-?	0.08591	1E-7		0.01051	unit decrease	NR [6200000] (imputed)	N
1033	chr16	58838630	58838631	rs35317979	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	16q21		rs35317979-?	0.08591	2E-8		0.01016	unit decrease	NR [6200000] (imputed)	N
1033	chr16	58838630	58838631	rs35317979	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	16q21		rs35317979-?	0.08591	5E-6		0.01116	unit decrease	NR [6200000] (imputed)	N
1033	chr16	58844964	58844965	rs13380548	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	16q21	NR	rs13380548-?	NR	5E-7		0.05864091	[0.036-0.082] unit increase	Illumina [7519308] (imputed)	N
1034	chr16	58855815	58855816	rs10083736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs10083736-T	0.2129	4E-8	(conditional-joint)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1034	chr16	58864313	58864314	rs6416775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q21	NR	rs6416775-T	NR	4E-14		0.0181	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1034	chr16	58865021	58865022	rs11646417	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16q21	GOT2	rs11646417-T	0.07	3E-19	(imidazole lactate)	0.478	[0.37-0.58] unit increase	Illumina [7750367] (imputed)	N
1034	chr16	58889909	58889910	rs16960574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q21	NR	rs16960574-C	NR	7E-13		0.0475	[0.035-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1034	chr16	58929346	58929347	rs118075513	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	16q21	RP11-410D17.2	rs118075513-G	0.033	8E-6		2.49	[1.67-3.72]	Illumina [7959153] (imputed)	N
1034	chr16	58976590	58976591	rs8044477	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	16q21	intergenic	rs8044477-?	NR	2E-7	(Serous)	1.1	[1.06-1.15]	Illumina [up to 10962898] (imputed)	N
1034	chr16	58976590	58976591	rs8044477	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	16q21	intergenic	rs8044477-?	NR	1E-8		1.1		Illumina [up to 10962898] (imputed)	N
1035	chr16	59016442	59016443	rs183594686	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC092378.1	rs183594686-?	NR	3E-8		2.2306	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1035	chr16	59040359	59040360	rs7188913	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	16q21	NR	rs7188913-?	NR	2E-6		0.0869	[0.051-0.123] unit increase	Illumina [~ 7800000] (imputed)	N
1037	chr16	59248661	59248662	rs4313803	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	16q21	GOT2	rs4313803-A	0.58	2E-8		0.012865377	[0.0084-0.0173] unit decrease	Affymetrix [11514463] (imputed)	N
1038	chr16	59427130	59427131	rs11076317	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs11076317-?	NR	1E-9				NR [NR]	N
1038	chr16	59427130	59427131	rs11076317	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs11076317-?	NR	1E-9				NR [NR]	N
1038	chr16	59427130	59427131	rs11076317	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs11076317-?	NR	4E-10				NR [NR]	N
1038	chr16	59450595	59450596	rs7192713	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs7192713-?	NR	5E-9				NR [NR]	N
1038	chr16	59450595	59450596	rs7192713	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs7192713-?	NR	2E-9				NR [NR]	N
1038	chr16	59450595	59450596	rs7192713	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	16q21		rs7192713-?	NR	1E-9				NR [NR]	N
1038	chr16	59476178	59476179	rs2062113	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16q21	LOC644600/LOC644649	rs2062113-T	0.429502	3E-10		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1038	chr16	59476178	59476179	rs2062113	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	16q21	LOC644600/LOC644649	rs2062113-T	0.429502	3E-7		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1040	chr16	59649778	59649779	rs252704	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	16q21	NR	rs252704-A	0.369	1E-6		0.01805637	[0.011-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
1040	chr16	59746129	59746130	rs1392505	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	16q21	GOT2, CDH8	rs1392505-A	0.8	1E-6	(EA)	1.89	[1.46-2.44]	Affymetrix [up to 9627525] (imputed)	N
1041	chr16	59787569	59787570	rs1392502	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q21	NR	rs1392502-?	NR	1E-8	(AA)	0.8419	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1041	chr16	59817913	59817914	rs9937140	32019797	Wojcik GL	2020-02-04	mBio	Genome-Wide Association Study of Cryptosporidiosis in Infants Implicates PRKCA.	Cryptosporidiosis	183 Bangladeshi ancestry cases, 873 Bangladeshi ancestry controls	NA	16q21	APOOP5	rs9937140-G	NR	8E-7		1.99	[NR]	Illumina [6504706] (imputed)	N
1041	chr16	59832533	59832534	rs12930559	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	16q21		rs12930559-?	NR	4E-6		1.299	[1.163-1.451]	Affymetrix [7975321] (imputed)	N
1041	chr16	59885736	59885737	rs4785074	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasma Blast-Plasma Cell %lymphocyte	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q21		rs4785074-T	0.63527	5E-8		0.1403	[0.09-0.191] unit decrease	Illumina [18238619] (imputed)	N
1041	chr16	59890697	59890698	rs8056650	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (hippocampal volume)	162 European ancestry Alzheimer's disease cases, 343 European ancestry amnestic mild cognitive impairment cases, 193 European ancestry healthy elderly controls	NA	16q21	intergenic	rs8056650-G	0.07	1E-6		302.5	[NR] unit decrease	Illumina [546314]	N
1042	chr16	59940187	59940188	rs16961543	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q21	LOC644649	rs16961543-C	0.237	6E-6	(Urinary free dopamine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
1042	chr16	59999346	59999347	rs77803191	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	16q21	NR	rs77803191-?	NR	3E-6		0.1497	[0.087-0.213] unit decrease	Illumina [at least 560000] (imputed)	N
1043	chr16	60056555	60056556	rs11641605	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	16q21	NR	rs11641605-?	NR	7E-6				Illumina [1735619]	N
1043	chr16	60138915	60138916	rs2081209	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q21	NR	rs2081209-C	0.521	2E-8		0.00603141	[0.0039-0.0081] unit increase	NR [9732723] (imputed)	N
1044	chr16	60178228	60178229	rs2897579	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q21		rs2897579-C	0.424	4E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1045	chr16	60314655	60314656	rs9932186	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	16q21	CDH8	rs9932186-?	NR	3E-8	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1045	chr16	60355027	60355028	rs117225626	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	16q21	NR	rs117225626-T	0.0148587	5E-7		1.148	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1045	chr16	60371500	60371500	rs3055140	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	16q21	intergenic	rs3055140-?	NR	2E-9		1.0718113	[1.05-1.1]	Illumina [13729857] (imputed)	N
1046	chr16	60449358	60449359	rs12921224	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q21	NA	rs12921224-G		3E-9		0.011038	[0.0074-0.0147] unit increase	Illumina [13288253] (imputed)	N
1046	chr16	60462357	60462358	rs1862746	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	16q21	LOC729159	rs1862746-C	0.413	4E-6				Affymetrix [761050]	N
1046	chr16	60462705	60462706	rs12919634	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16q21	RP11-354I13.2, AC009081.1, GNPATP	rs12919634-C	NR	2E-6	(number of awakenings after sleep onset, weekdays)	0.1134	[0.067-0.16] unit increase	Affymetrix [7141204] (imputed)	N
1046	chr16	60508750	60508751	rs182346790	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	16q21	intergenic	rs182346790-C	3.0E-4	7E-70		32.7817	[29.15-36.42] mmHg increase	Affymetrix [NR] (imputed)	N
1046	chr16	60510835	60510836	rs36067839	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	16q21		rs36067839-C	0.2578	8E-7		0.11	[0.071-0.149] unit decrease	Illumina [21233433] (imputed)	N
1047	chr16	60618638	60618639	rs9746958	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	16q21	intergenic	rs9746958-A	NR	7E-7	(males)	0.311	[0.19-0.43] unit increase	Illumina [7531543] (imputed)	N
1047	chr16	60623260	60623261	rs35686695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q21		rs35686695-T	NR	1E-9		0.0146	[0.0099-0.0193] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1047	chr16	60627490	60627491	rs8063159	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q21	intergenic	rs8063159-A	0.3878	7E-17		0.0144983	[0.011-0.018] unit increase	Affymetrix [11880941] (imputed)	N
1047	chr16	60627490	60627491	rs8063159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	16q21		rs8063159-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1047	chr16	60628435	60628436	rs8044054	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q21		rs8044054-T	0.3889	4E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1047	chr16	60628435	60628436	rs8044054	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q21		rs8044054-T	0.3878	7E-17		1.0315		Affymetrix [11880941] (imputed)	N
1047	chr16	60628435	60628436	rs8044054	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q21	intergenic	rs8044054-T	0.3878	7E-17		1.0311761		Affymetrix [11880941] (imputed)	N
1047	chr16	60637046	60637047	rs79385087	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16q21	NR	rs79385087-C	0.9472104	3E-8		1.0799136	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1047	chr16	60644643	60644644	rs11862389	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	GOT2	rs11862389-?	NR	5E-6	(LPE 18:1)	0.1880365	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1047	chr16	60648406	60648407	rs117009308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q21		rs117009308-G	NR	3E-11		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1047	chr16	60648406	60648407	rs117009308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q21		rs117009308-G	NR	1E-9		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1047	chr16	60650142	60650143	rs17822102	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	16q21	NR	rs17822102-G	0.3437	9E-10		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1047	chr16	60658750	60658751	rs12598916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs12598916-C	0.7249	3E-8	(MTAG)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1047	chr16	60659811	60659812	rs35300112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q21		rs35300112-C	NR	2E-15		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1047	chr16	60659811	60659812	rs35300112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q21		rs35300112-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1048	chr16	60690431	60690432	rs150896862	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs150896862-T	0.999	1E-7	(AA)	0.381	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60694182	60694183	rs188330159	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs188330159-G	0.999	1E-7	(AA)	0.379	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60697585	60697586	rs114607539	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs114607539-A	0.999	1E-7	(AA)	0.379	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60710471	60710472	rs146680296	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs146680296-G	0.999	1E-7	(AA)	0.379	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60719613	60719614	rs12445427	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	GOT2	rs12445427-?	NR	6E-6	(LPC 20:3)	0.16423328	[0.093-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
1048	chr16	60726206	60726207	rs184181234	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs184181234-C	0.999	1E-7	(AA)	0.377	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60732167	60732168	rs116768843	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs116768843-A	0.999	2E-7	(AA)	0.371	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60733602	60733603	rs17822114	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		16q21	intergenic	rs17822114-?	0.034	3E-18			[NR]	Affymetrix, Illumina [152234]	N
1048	chr16	60734666	60734667	rs143132326	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs143132326-G	0.999	1E-7	(AA)	0.377	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60744622	60744623	rs74681184	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs74681184-T	0.999	1E-7	(AA)	0.377	unit increase	Illumina [NR] (imputed)	N
1048	chr16	60745207	60745208	rs16962498	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	GOT2	rs16962498-?	NR	2E-7	(LPE 18:1)	0.19815807	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1048	chr16	60750203	60750204	rs9939229	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q21	intergenic	rs9939229-G	0.520599035266947	7E-6	(G_Victivallis_HB)	0.260244	[0.15-0.37] unit increase	Illumina [7711310] (imputed)	N
1048	chr16	60753148	60753149	rs72786905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs72786905-A	0.0122	7E-10	(MPO)	0.1267	NR unit increase	Illumina [1671387] (imputed)	N
1048	chr16	60753148	60753149	rs72786905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs72786905-A	0.0122	2E-8	(S100A9)	0.1676	NR unit increase	Illumina [1671387] (imputed)	N
1048	chr16	60799483	60799484	rs760008623	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q21	LOC729159, MIR4426	rs760008623-?		1E-11		1.789	[1.27-2.31] unit increase	Illumina [31500000] (imputed)	N
1049	chr16	60823681	60823682	rs117949282	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	16q21	AC009080.1	rs117949282-T	0.0076	8E-6		0.2014	[0.11-0.29] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1049	chr16	60869917	60869918	rs39790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs39790-?	NR	4E-14				Affymetrix [NR]	N
1049	chr16	60925885	60925886	rs17248351	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	GOT2	rs17248351-?	NR	5E-6	(CE 18:1)	0.6020448	[0.34-0.86] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1049	chr16	60939776	60939777	rs148560653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q21	Intergenic	rs148560653-C	0.997	2E-6	(AA)	0.863	NR unit increase	Illumina [NR] (imputed)	N
1050	chr16	60962903	60962904	rs1392533	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	GOT2	rs1392533-?	NR	4E-6	(pyruvate)	0.21339798	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1050	chr16	61028672	61028673	rs16962845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs16962845-T	0.8965	4E-8	(MTAG)	0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr16	61028996	61028997	rs16962850	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q21		rs16962850-T	0.892	2E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1050	chr16	61069814	61069815	rs71404070	29228018	Roos TR	2017-12-11	PLoS One	Genome-wide association study identifies a locus associated with rotator cuff injury.	Rotator cuff injury	6,993 European ancestry cases, 669 Latin American cases, 394 East Asian ancestry cases, 269 African American cases, 32 South Asian ancestry cases, 76,271 European ancestry controls, 7,891 Latin American controls, 7,124 East Asian ancestry controls, 2,892 African American controls, 444 South Asian ancestry controls	NA	16q21	CDH8, LOC729159	rs71404070-A	NR	2E-8		1.25	[1.18-1.33]	Affymetrix [10582947] (imputed)	N
1051	chr16	61120980	61120981	rs2650673	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	16q21	CDH8	rs2650673-A	0.44	4E-6		2.2	[1.22-3.18] unit increase	Illumina [629414]	N
1051	chr16	61123146	61123147	rs2639889	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Morbidity-free survival	558 individuals	NA	16q21	intergenic	rs2639889-?	NR	9E-7				Affymetrix [70897]	N
1051	chr16	61151106	61151107	rs979277	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	16q21	Intergenic	rs979277-A	0.571046667	2E-6		0.345198	unit increase	Illumina [6969139] (imputed)	N
1054	chr16	61551764	61551765	rs13338858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q21		rs13338858-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1054	chr16	61566473	61566474	rs147600690	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q21	CDH8	rs147600690-T	0.0117881970902983	5E-6	(F_Sutterellaceae_HB)	1.64624	[0.94-2.36] unit decrease	Illumina [7711310] (imputed)	N
1054	chr16	61577301	61577302	rs79386779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q21	Intergenic	rs79386779-T	0.2258	9E-13	(MTAG)	0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr16	61579617	61579618	rs17248751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs17248751-A	0.7827	1E-15		0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1054	chr16	61579617	61579618	rs17248751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs17248751-A	0.7827	1E-17	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr16	61582585	61582586	rs62047280	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs62047280-A	0.2182	4E-13	(conditional-joint)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1054	chr16	61582585	61582586	rs62047280	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q21	CDH8	rs62047280-A	NR	5E-10		6.205	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1054	chr16	61584237	61584238	rs2078539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs2078539-A	0.6908	3E-15	(MTAG)	0.0141	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr16	61603046	61603047	rs117980903	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	16q21	NR	rs117980903-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1055	chr16	61615476	61615477	rs7195559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q21	Intergenic	rs7195559-C	0.4342	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1055	chr16	61615647	61615648	rs7200440	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q21	Intergenic	rs7200440-T	0.5655	2E-12	(MTAG)	0.0127	[0.0092-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1055	chr16	61647588	61647589	rs3902952	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q21	NR	rs3902952-T	0.1881	3E-10		1.049	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1055	chr16	61651405	61651406	rs1319994	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q21	CDH8	rs1319994-T	0.5947	7E-15		0.015368677	[0.011-0.019] unit decrease	Illumina [9339358] (imputed)	N
1055	chr16	61659640	61659641	rs2897807	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q21	CDH8	rs2897807-A	0.513	2E-11		0.0079	[0.0055-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1056	chr16	61737372	61737373	rs114358366	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	16q21		rs114358366-T	0.989557	2E-6		0.0666048	[0.038-0.095] unit decrease	Illumina [13900000] (imputed)	N
1056	chr16	61747668	61747669	rs12446623	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q21	NR	rs12446623-?	NR	3E-6		4.678	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1056	chr16	61773848	61773849	rs143812851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs143812851-A	0.1735	1E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1056	chr16	61773848	61773849	rs143812851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs143812851-A	0.1735	9E-11	(MTAG)	0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr16	61774056	61774057	rs140663152	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q21	Intergenic	rs140663152-A	0.1753	4E-8	(MTAG)	0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr16	61775929	61775930	rs59243311	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q21		rs59243311-G	0.577	9E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1056	chr16	61778094	61778095	rs8048207	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	16q21	CDH8	rs8048207-T	0.121	8E-6	(Additive model)			Affymetrix [271817]	N
1056	chr16	61789754	61789755	rs78513878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs78513878-T	0.1609	6E-10	(MTAG)	0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr16	61828781	61828782	rs78423589	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16q21	CDH8	rs78423589-G	0.9738	4E-6		0.0151	[0.0086-0.0216] unit increase	Affymetrix [~ 7740000] (imputed)	N
1056	chr16	61835294	61835295	rs117167357	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	16q21	CDH8	rs117167357-A	0.9309	8E-9		0.022044498	[0.015-0.03] unit decrease	Illumina [9339358] (imputed)	N
1057	chr16	61921099	61921100	rs72798770	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q21	NR	rs72798770-A	0.0767	1E-10		0.0130913	[0.0091-0.0171] unit increase	NR [9732723] (imputed)	N
1057	chr16	61968304	61968305	rs8058677	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	16q21		rs8058677-?	NR	4E-8		0.0125	NR unit decrease	NR [5568121] (imputed)	N
1057	chr16	61989130	61989131	rs141932469	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	16q21	CDH8	rs141932469-T	0.0128	9E-7		2.03	[1.6-2.48]	Illumina [64973696] (imputed)	N
1058	chr16	62023769	62023770	rs16942585	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs16942585-?	NR	2E-32				Affymetrix [NR]	N
1058	chr16	62042282	62042283	rs79317201	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA11471 sp000434215 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs79317201-A	0.0108495	4E-8		0.353191	[0.23-0.48] unit increase	Illumina [7980478] (imputed)	N
1058	chr16	62042282	62042283	rs79317201	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA11471 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs79317201-A	0.0108495	2E-8		0.40926	[0.27-0.55] unit increase	Illumina [7980478] (imputed)	N
1058	chr16	62042282	62042283	rs79317201	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA11471 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs79317201-A	0.0108495	1E-8		0.395696	[0.26-0.53] unit increase	Illumina [7980478] (imputed)	N
1058	chr16	62053059	62053060	rs968627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q21	Intergenic	rs968627-A	0.4287	3E-11	(MTAG)	0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1058	chr16	62053059	62053060	rs968627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q21	Intergenic	rs968627-A	0.4287	4E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1058	chr16	62055745	62055746	rs7201179	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	16q21	CDH8	rs7201179-T	0.4321	6E-10		0.014050871	[0.0096-0.0185] unit increase	Affymetrix [11514463] (imputed)	N
1058	chr16	62059247	62059248	rs12325429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q21	Intergenic	rs12325429-A	0.435	3E-14	(MTAG)	0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1058	chr16	62065679	62065681	rs200312707	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants and depression	7,795 European ancestry responder cases, 191,173 European ancestry healthy controls	NA	16q21	CDH8	rs200312707-?		1E-6		1.0881393	[1.05-1.13]	Illumina [~ 12000000] (imputed)	N
1058	chr16	62075137	62075138	rs12446238	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q21	NR	rs12446238-G	0.459245	4E-10		0.039515562	[0.027-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1058	chr16	62075137	62075138	rs12446238	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q21	Intergenic	rs12446238-A	0.4436	3E-10		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1058	chr16	62075137	62075138	rs12446238	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q21	NR	rs12446238-A	NR	5E-9		5.854	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1058	chr16	62081033	62081034	rs12162090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs12162090-A	0.8294	5E-13	(MTAG)	0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1058	chr16	62086037	62086038	rs74710412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q21		rs74710412-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1058	chr16	62100210	62100211	rs8050940	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		16q21	intergenic	rs8050940-?	0.02	1E-26			[NR]	Affymetrix, Illumina [152234]	N
1059	chr16	62131702	62131703	rs7202829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs7202829-T	0.468	6E-11	(conditional-joint)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1059	chr16	62131702	62131703	rs7202829	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs7202829-T	0.468	7E-14	(MTAG)	0.0098	[0.0073-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1059	chr16	62167016	62167017	rs62049757	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q21	NR	rs62049757-?	NR	5E-9				Illumina [7760689] (imputed)	N
1059	chr16	62193639	62193640	rs9929556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs9929556-T	0.5688	2E-12		0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1060	chr16	62284541	62284542	rs76715920	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	16q21	NR	rs76715920-A	0.8798	7E-7		0.0654	[0.04-0.091] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1060	chr16	62377152	62377153	rs11645366	21602797	Wright FA	2011-05-22	Nat Genet	Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.	Cystic fibrosis severity	2,317 European ancestry cases, 177 cases	898 European ancestry sibling pair cases, 75 sibling pair cases	16q21	CDH8	rs11645366-C	0.77	7E-6				Illumina [~ 2609000] (imputed)	N
1061	chr16	62456910	62456911	rs116860195	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	16q21	NR	rs116860195-A	0.0188	9E-6		0.6818	[0.38-0.98] unit decrease	Illumina [NR] (imputed)	N
1061	chr16	62487088	62487089	rs1834077	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	16q21	NR	rs1834077-A	0.39	3E-6		1.63	[1.33-2.01]	Illumina [714494]	N
1062	chr16	62570348	62570349	rs150252171	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q21	Intergenic	rs150252171-A	NR	2E-7	(between families)	5.224	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	8E-9	(FKBP1A)	0.02529	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	7E-9	(TAGLN2)	0.331	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	6E-9	(PKM)	0.4216	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	6E-9	(CFL1)	0.7933	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	5E-9	(CLIC1)	0.158	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	3E-8	(ALDOA)	0.3078	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	3E-10	(SEPT7)	0.06243	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-9	(GSTP1)	0.1845	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-9	(CAP1)	0.3204	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-8	(CORO1A)	0.07562	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-10	(LCP1)	0.6327	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-10	(FLNA)	1.003	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	2E-10	(CNN2)	0.01669	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	1E-9	(CTSC)	0.02375	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	1E-8	(DPYSL2)	0.2361	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62585133	62585134	rs147310698	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs147310698-T	0.02091	1E-8	(ARHGDIB)	0.06626	NR unit increase	Illumina [1671387] (imputed)	N
1062	chr16	62600788	62600789	rs288646	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	16q21	intergenic	rs288646-?	NR	6E-6		1.35	[0.7-2] unit decrease	Illumina [at least 13000000] (imputed)	N
1062	chr16	62628774	62628775	rs1364229	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or rheumatoid arthritis	741 European ancestry marginal zone lymphoma cases, 3,921 European ancestry rheumatoid arthritis cases, 10,070 European ancestry controls	NA	16q21	Intergenic	rs1364229-A	NR	2E-10		1.3459		Illumina [~ 600000] (imputed)	N
1063	chr16	62678289	62678290	rs186888141	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q21	NR	rs186888141-?	NR	6E-6		0.013553	[0.0077-0.0194] unit increase	Affymetrix [805426] (imputed)	N
1063	chr16	62778598	62778599	rs2962438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q21	Intergenic	rs2962438-A	0.2068	2E-10	(MTAG)	0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1063	chr16	62778598	62778599	rs2962438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q21	Intergenic	rs2962438-A	0.2068	1E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1064	chr16	62798851	62798852	rs2962462	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	16q21	intergenic	rs2962462-?	0.56	2E-6		0.29	[0.17-0.41] unit increase	Illumina [2095209]	N
1064	chr16	62803840	62803841	rs11075489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q21	NA	rs11075489-T	0.4739	1E-11		0.0116	[0.0083-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
1064	chr16	62808006	62808007	rs2962466	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Remission after antidepressant treatment in major depression	161 European ancestry remitters, 146 European ancestry non-remitters	NA	16q21	RP11-50O21.1	rs2962466-G	NR	2E-6		0.37	[0.24-0.56]	Illumina [4471676] (imputed)	N
1064	chr16	62808006	62808007	rs2962466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q21	NR	rs2962466-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1064	chr16	62808006	62808007	rs2962466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q21		rs2962466-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1064	chr16	62816627	62816628	rs2962082	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16q21	NR	rs2962082-A	0.4827	7E-10		0.015354665	[0.01-0.02] unit decrease	Affymetrix [10549349] (imputed)	N
1064	chr16	62867930	62867932	rs3044849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q21		rs3044849-T	NR	6E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1065	chr16	62930849	62930850	rs55937634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs55937634-A	0.1382	6E-10	(MTAG)	0.0148	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1065	chr16	62935171	62935172	rs11862102	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q21		rs11862102-?	NR	3E-6		1.1226511	[1.06951251028782-1.17842982732602]	Illumina [up to 7827597] (imputed)	N
1065	chr16	63000289	63000290	rs11645800	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	16q21	CDH8	rs11645800-G	0.184	1E-7		1.2	[1.12-1.28]	Illumina [1438399] (imputed)	N
1065	chr16	63031361	63031361	rs199602679	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	16q21	CDH8	rs199602679-G	0.783938	1E-8		0.01603	[0.011-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
1066	chr16	63100442	63100443	rs997210	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	16q21	NR	rs997210-?	NR	9E-6		1491.176	NR unit increase	Illumina [2379855]	N
1066	chr16	63127869	63127870	rs35754740	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs35754740-T	0.5811	5E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1066	chr16	63127869	63127870	rs35754740	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs35754740-T	0.5811	7E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1067	chr16	63272608	63272609	rs111972903	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	16q21		rs111972903-A	0.0013998	7E-6		0.40167	[0.23-0.58] unit decrease	Affymetrix [15580782] (imputed)	N
1068	chr16	63376683	63376684	rs73568291	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	16q21		rs73568291-G	0.0013485	9E-6		0.40593	[0.23-0.58] unit decrease	Affymetrix [15580782] (imputed)	N
1070	chr16	63573375	63573376	rs8045334	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	16q21	CDH8, CDH11	rs8045334-G	0.19	8E-7		0.126	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1070	chr16	63576337	63576338	rs16966161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs16966161-A	0.4198	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1070	chr16	63697133	63697134	rs7193419	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q21	RPS15AP34	rs7193419-T	NR	7E-8	(EA)	1.0605	[1.04-1.08]	Illumina [6627481] (imputed)	N
1070	chr16	63697133	63697134	rs7193419	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q21	RPS15AP34	rs7193419-T	NR	2E-7		1.05	[1.03-1.07]	Illumina [6627481] (imputed)	N
1070	chr16	63700507	63700508	rs2018916	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q21	NR	rs2018916-C	NR	7E-9		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1071	chr16	63731206	63731207	rs77679564	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs77679564-G	0.01045	3E-8	(KRT10)	1.849	NR unit decrease	Illumina [1671387] (imputed)	N
1071	chr16	63754199	63754200	rs4949142	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	16q21	NR	rs4949142-A	NR	6E-7	(GEE model)	0.59647	[0.36-0.83] unit decrease	NR [NR] (imputed)	N
1071	chr16	63760711	63760712	rs1376741	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	16q21	RP11-370P15.2	rs1376741-T	0.07147	7E-7		1.732	[1.395-2.151]	Illumina [4495750] (imputed)	N
1071	chr16	63760711	63760712	rs1376741	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	16q21	RP11-370P15.2	rs1376741-T	NR	4E-7		1.5152	NR	Illumina [up to 4495750] (imputed)	N
1071	chr16	63770083	63770084	rs4949146	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs4949146-?	NR	8E-22				Affymetrix [NR]	N
1071	chr16	63802573	63802574	rs16966555	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs16966555-?	NR	8E-33				Affymetrix [NR]	N
1072	chr16	63918567	63918568	rs322578	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q21	NR	rs322578-C	0.759	6E-8		0.0068502	[0.0044-0.0093] unit decrease	NR [9732723] (imputed)	N
1072	chr16	63955446	63955447	rs1381102	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q21	intergenic	rs1381102-A	0.40	6E-6				Perlegen [378332]	N
1073	chr16	63994179	63994180	rs9989364	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q21	Intergenic	rs9989364-?		9E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
1073	chr16	64022525	64022526	rs74635764	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	16q21	CDH8, CDH11	rs74635764-T	0.014385871	9E-6		2.1312459	[1.526686893-2.975206542]	Illumina [10439017] (imputed)	N
1074	chr16	64182855	64182856	rs12444192	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	16q21	NR	rs12444192-G	0.008253	5E-6		0.7648	[0.44-1.09] unit increase	Illumina [10677593] (imputed)	N
1075	chr16	64300389	64300390	rs112725204	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC012322.1	rs112725204-?	NR	5E-9	(male)	1.79533	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1076	chr16	64371162	64371163	rs8058130	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q21	LOC729217	rs8058130-G	NR	5E-8		1.0559661	[1.04-1.08]	Illumina [6627481] (imputed)	N
1076	chr16	64371162	64371163	rs8058130	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	16q21	CDH11	rs8058130-G	NR	5E-8		1.0548522	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1076	chr16	64373893	64373894	rs2010476	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	16q21	NR	rs2010476-?	NR	2E-9		1.05982	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1076	chr16	64444587	64444588	rs1437153	32701512	Cairns J	2020-07-23	JCI Insight	Pharmacogenomics of aromatase inhibitors in postmenopausal breast cancer and additional mechanisms of anastrozole action.	Estrogen level change in anastrozole-treated breast cancer	624 individuals	NA	16q21	CDH11	rs1437153-G	0.0618	3E-9		0.4028	[0.27-0.53] unit decrease	Illumina [up to 8000000] (imputed)	N
1077	chr16	64518661	64518662	rs12447992	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16q21	CDH11	rs12447992-A	0.8651	5E-9		0.002	[0.0012-0.0028] unit decrease	Affymetrix [15275733] (imputed)	N
1077	chr16	64532376	64532377	rs59367532	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16q21	NR	rs59367532-G	0.254	8E-10		0.00935679	[0.0064-0.0123] unit decrease	NR [~ 9732723] (imputed)	N
1078	chr16	64635402	64635403	rs16967753	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	16q21	LOC729217	rs16967753-C		1E-6		0.15	[0.09-0.21] unit increase	Affymetrix [~ 2500000] (imputed)	N
1078	chr16	64705582	64705583	rs9933400	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-841 sp002479075 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs9933400-A	0.0301245	4E-8		0.123899	[0.08-0.168] unit increase	Illumina [7980478] (imputed)	N
1078	chr16	64716850	64716851	rs9940346	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q21	NR	rs9940346-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1078	chr16	64718147	64718148	rs9932690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q21		rs9932690-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1078	chr16	64720942	64720943	rs976498	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	16q21	intergenic	rs976498-T	0.829	1E-6		1.07691	[1.05-1.11]	NR [9372253] (imputed)	N
1079	chr16	64834991	64834992	rs112500154	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16q21	NR	rs112500154-A	0.185	5E-10		0.0106394	[0.0073-0.014] unit decrease	NR [~ 9732723] (imputed)	N
1079	chr16	64872589	64872590	rs62044525	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16q21	NR	rs62044525-G	0.184	1E-10		0.01217318	[0.0085-0.0159] unit decrease	NR [~ 10000000] (imputed)	N
1080	chr16	64901064	64901065	rs182870629	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	RUG472 sp900319345 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs182870629-C	0.0309339	4E-9		0.11878	[0.079-0.158] unit increase	Illumina [7980478] (imputed)	N
1080	chr16	64901064	64901065	rs182870629	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	RUG472 abundance in stool	5,959 Finnish ancestry individuals	NA	16q21		rs182870629-C	0.0309339	4E-9		0.12124	[0.081-0.162] unit increase	Illumina [7980478] (imputed)	N
1080	chr16	64904721	64904722	rs1895518	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	16q21	CDH11	rs1895518-T	NR	4E-6		4.623	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1080	chr16	64936927	64936928	rs1540412	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	16q21	CDH11	rs1540412-A	0.5	4E-6		1.25	[1.16-1.34]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1080	chr16	64997012	64997013	rs257341	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q21		rs257341-C	0.33	2E-13		7.33	z score increase	Affymetrix [9061022] (imputed)	N
1080	chr16	64997012	64997013	rs257341	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q21		rs257341-C	0.33	2E-19		9.04	z score increase	Affymetrix [9061022] (imputed)	N
1080	chr16	64997012	64997013	rs257341	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q21	NR	rs257341-C	0.3609	6E-15				NR [9056863] (imputed)	N
1080	chr16	64997012	64997013	rs257341	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q21	NR	rs257341-C	0.3609	1E-17				NR [9056863] (imputed)	N
1080	chr16	65005394	65005395	rs3785315	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH11	5,362 Icelandic ancestry individuals	NA	16q21		rs3785315-C	0.1122	1E-197		0.82733	[0.77-0.88] unit decrease	Illumina [7506463] (imputed)	N
1081	chr16	65014908	65014909	rs40115	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	16q21	NR	rs40115-T	0.344	3E-8	(Rostral Middle Frontal)	20.371168	[13.17-27.57] unit decrease	Affymetrix, Illumina [NR]	N
1081	chr16	65016164	65016165	rs76181686	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH11	5,362 Icelandic ancestry individuals	NA	16q21		rs76181686-G	0.01671	3E-13		0.528879	[0.39-0.67] unit decrease	Illumina [7506463] (imputed)	N
1081	chr16	65025717	65025718	rs35195	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q21	CDH11	rs35195-G	0.6411	7E-15		0.1091	[0.08-0.138] unit increase	Affymetrix [~ 11900000] (imputed)	N
1081	chr16	65029942	65029943	rs59614634	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q21	CDH11	rs59614634-A	0.89046875	3E-101	(CDH11, 9604_14_3)	0.8027372	[0.73-0.87] unit increase	Illumina [> 1000000] (imputed)	N
1081	chr16	65041120	65041121	rs35181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q21		rs35181-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1081	chr16	65044999	65045000	rs5003950	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	16q21	NR	rs5003950-?		1E-6		1.57	[1.31-1.89]	Illumina [539473] (imputed)	N
1081	chr16	65047467	65047468	rs75558961	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16q21	NR	rs75558961-T	0.051	2E-8	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1081	chr16	65055539	65055539	rs564626594	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q21	CDH11	rs564626594-T	0.6655	2E-15		0.1166	[0.087-0.146] unit increase	Affymetrix [~ 11900000] (imputed)	N
1081	chr16	65055839	65055840	rs257336	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	16q21		rs257336-?	NR	1E-10				NR [9705931] (imputed)	N
1081	chr16	65063261	65063262	rs4967882	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	16q21	NR	rs4967882-C		2E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
1081	chr16	65067442	65067443	rs12447201	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	16q21	CDH11	rs12447201-T	NR	4E-10		0.0468	unit decrease	Illumina [15409056] (imputed)	N
1081	chr16	65071825	65071826	rs12920174	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q21		rs12920174-T	0.33	1E-39		13.16	z score increase	Affymetrix [9061022] (imputed)	N
1081	chr16	65073798	65073799	rs74984957	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	16q21	CDH11	rs74984957-G	0.64	6E-13				Affymetrix, Illumina [8002429] (imputed)	N
1081	chr16	65076237	65076238	rs74965217	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs74965217-G	0.02962	3E-9	(RBMX)	0.09855	NR unit increase	Illumina [1671387] (imputed)	N
1081	chr16	65080738	65080739	rs1874458	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	16q21	CDH11	rs1874458-?	NR	1E-13		0.0986	[0.073-0.125] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1081	chr16	65080738	65080739	rs1874458	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	16q21	CDH11	rs1874458-?	NR	2E-6		1.0806903	[1.05-1.12]	Affymetrix [up to 40000000] (imputed)	N
1081	chr16	65080738	65080739	rs1874458	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	16q21	CDH11	rs1874458-G	0.64	3E-15		0.104	[0.079-0.129] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr16	65093924	65093925	rs78095436	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	16q21	CDH11	rs78095436-T	0.019	7E-6		2.729	[1.762-4.228]	Affymetrix, Illumina [14074516] (imputed)	N
1081	chr16	65107919	65107920	rs12925656	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	16q21	NR	rs12925656-C	0.09999999999999998	3E-6		1.2195122	[1.12-1.32]	NR [at least 8807005] (imputed)	N
1081	chr16	65113988	65113989	rs141490781	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q21	NR	rs141490781-?	NR	4E-8				Illumina [7760689] (imputed)	N
1081	chr16	65116238	65116239	rs1532418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q21		rs1532418-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1081	chr16	65128457	65128458	rs17431820	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	16q21	CDH11	rs17431820-?	NR	2E-12				Affymetrix [up to 7325140] (imputed)	N
1081	chr16	65135114	65135115	rs12445232	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	16q21	NR	rs12445232-G		7E-6		0.0803	[0.045-0.115] SD units increase	NR [10700000] (imputed)	N
1082	chr16	65148739	65148740	rs140953973	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	16q21	CDH11	rs140953973-A	0.0244	7E-6		0.109	[0.061-0.157] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	7E-9	(206 ms)	0.0359169	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	7E-9	(200 ms)	0.0357221	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	7E-9	(182 ms)	0.03518	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	5E-8	(172 ms)	0.0329493	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	5E-8	(158 ms)	0.0327454	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	5E-10	(178 ms)	0.0373232	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-9	(208 ms)	0.0368608	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-9	(198 ms)	0.0361259	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-9	(192 ms)	0.0361025	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-9	(184 ms)	0.0356983	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-8	(216 ms)	0.0341724	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-8	(174 ms)	0.0342677	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-8	(170 ms)	0.0328764	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-8	(168 ms)	0.0333009	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	4E-10	(188 ms)	0.0381176	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	3E-9	(180 ms)	0.0363492	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	3E-8	(204 ms)	0.0342738	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	3E-8	(202 ms)	0.0343656	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	3E-8	(160 ms)	0.032684	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	2E-9	(190 ms)	0.0376578	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	2E-9	(176 ms)	0.0363653	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	2E-8	(164 ms)	0.0339468	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	1E-9	(186 ms)	0.0372361	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	1E-8	(210 ms)	0.0354071	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	1E-8	(196 ms)	0.0352912	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	1E-8	(194 ms)	0.0347882	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65180169	65180170	rs62044987	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q21	CDH11	rs62044987-G	0.70972	1E-8	(162 ms)	0.0337765	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1082	chr16	65199724	65199725	rs1423778	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	16q21	NR	rs1423778-T	0.227	6E-7	(Jaccard metric)	4.842588	NR z-score increase	Illumina [5293637] (imputed)	N
1082	chr16	65244617	65244618	rs11075573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q21		rs11075573-G	NR	2E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1082	chr16	65256128	65256129	rs2042364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q21		rs2042364-G	NR	2E-20		0.0173	[0.014-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1082	chr16	65257706	65257707	rs7187563	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs7187563-T	0.01916	3E-10	(APRT)	0.2063	NR unit decrease	Illumina [1671387] (imputed)	N
1082	chr16	65257890	65257891	rs7189335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q21		rs7189335-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1082	chr16	65265701	65265702	rs56249585	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q21	chr16mb65	rs56249585-T	0.53032183	9E-9		0.1827	[0.12-0.25] unit increase	Affymetrix [~ 9800000] (imputed)	N
1082	chr16	65265701	65265702	rs56249585	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q21	CDH11, LOC283867	rs56249585-C		5E-9		0.373	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1082	chr16	65265701	65265702	rs56249585	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q21	CDH11, LOC283867	rs56249585-C		6E-14		0.337	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1082	chr16	65272049	65272050	rs374179645	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q21	intergenic	rs374179645-G	0.4479	7E-14		0.19	[0.14-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1083	chr16	65286869	65286870	rs7194801	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	16q21	CDH11	rs7194801-C	0.43	4E-18		0.2907	[0.23-0.36] unit decrease	Affymetrix [19941912] (imputed)	N
1083	chr16	65324087	65324088	rs7204525	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs7204525-?	NR	2E-19				Affymetrix [NR]	N
1083	chr16	65327827	65327828	rs727628	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	16q21	LINC00922	rs727628-?	NR	4E-6				Illumina [2668805]	N
1084	chr16	65411775	65411776	rs77562299	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	16q21	NR	rs77562299-C	0.06984	4E-6		1.26	[1.14-1.39]	Illumina [8992756] (imputed)	N
1084	chr16	65442959	65442960	rs698724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs698724-T	0.8096	3E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1084	chr16	65448078	65448079	rs818415	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16q21	ENSG00000260364, LINC00922	rs818415-?	NR	5E-8		0.013718705	[0.0088-0.0186] unit decrease	NR [7306098]	N
1084	chr16	65448078	65448079	rs818415	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q21		rs818415-T	0.8092	8E-10		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1084	chr16	65471926	65471927	rs818408	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	541 Japanese ancestry women	NA	16q21	LINC00922	rs818408-G	0.33	9E-6		48.1	[27.13-69.07] unit increase	Illumina [545605]	N
1084	chr16	65530636	65530637	rs189943417	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs189943417-A	0.9865	1E-9	(MTAG)	0.0437	[0.03-0.058] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1084	chr16	65533731	65533732	rs77848072	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	16q21	NR	rs77848072-C	0.007107	1E-6		0.8842	[0.53-1.24] unit increase	Illumina [10677593] (imputed)	N
1085	chr16	65603459	65603460	rs10775298	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q21	NR	rs10775298-?	NR	8E-6		4.468	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1085	chr16	65661515	65661516	rs151011520	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16q21	NR	rs151011520-?	NR	1E-6	(Native Hawaiian)	1.5544	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1086	chr16	65713941	65713942	rs7195652	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q21	NR	rs7195652-A	0.01742	3E-8	(CTSD)	2.09	NR unit increase	Illumina [1671387] (imputed)	N
1086	chr16	65737242	65737243	rs7186160	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	16q21	Intergenic	rs7186160-T	NR	9E-6	(adjusted for total body fat)	0.0776	[0.043-0.112] unit increase	Illumina [8511049] (imputed)	N
1086	chr16	65737242	65737243	rs7186160	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs7186160-T	0.5559	4E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr16	65814010	65814011	rs419392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q21	Intergenic	rs419392-A	0.1345	4E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1087	chr16	65837542	65837543	rs1095163	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	16q21	NR	rs1095163-?	NR	2E-9				Illumina [at least 7383741] (imputed)	N
1087	chr16	65843615	65843616	rs27336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q21	Intergenic	rs27336-A	0.6747	2E-8	(MTAG)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr16	65854775	65854776	rs254370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q21	Intergenic	rs254370-T	0.3843	8E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr16	65867501	65867502	rs457161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q21	Intergenic	rs457161-A	0.3538	1E-8	(MTAG)	0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1087	chr16	65895363	65895364	rs1126179	23918034	Kuhnisch J	2013-08-07	Clin Oral Investig	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	16q21	CDH5	rs1126179-G	0.595	3E-6		2.13	[1.55-2.92]	Affymetrix [2013491] (imputed)	N
1088	chr16	65939802	65939803	rs594585	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q21	CDH5	rs594585-T	0.408838	3E-8		0.00795132	[0.0051-0.0108] unit increase	Affymetrix [12370749]	N
1088	chr16	65951281	65951282	rs76756809	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q21	NA	rs76756809-G		2E-9		0.0180472	[0.012-0.024] unit decrease	Illumina [13288253] (imputed)	N
1088	chr16	65951281	65951282	rs76756809	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	16q21	NR	rs76756809-?	NR	1E-6		1.7205782	NR	Affymetrix, Illumina [7062950] (imputed)	N
1088	chr16	65952988	65952989	rs192264	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	16q21	NR	rs192264-G	0.4374	2E-8		0.013	[0.0085-0.0175] unit decrease	Illumina [NR] (imputed)	N
1088	chr16	65979169	65979170	rs8060950	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs8060950-?	NR	4E-10				Affymetrix [NR]	N
1089	chr16	66060568	66060569	rs144296676	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q21	LOC283867, CDH5	rs144296676-T	0.99	5E-9	(African)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1089	chr16	66095253	66095254	rs111980424	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Accommodative esotropia	224 European ancestry cases, 749 European ancestry controls	66 European ancestry cases, 264 European ancestry controls	16q21	intergenic	rs111980424-T	0.06	4E-6		2.25	NR	Illumina [6470615] (imputed)	N
1089	chr16	66138148	66138149	rs1110521	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q21	TK2	rs1110521-?	NR	8E-6	(SM 24:1)	0.19278756	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1089	chr16	66154186	66154187	rs1364089	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	16q21		rs1364089-?	NR	3E-6		0.297	unit decrease	Illumina [NR] (imputed)	N
1089	chr16	66158735	66158736	rs8050896	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	16q21	intergenic	rs8050896-T	0.161	4E-8	(Effect of Risperidone on CGI-S)			Affymetrix [492900]	N
1089	chr16	66164522	66164523	rs11866581	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16q21	Intergenic	rs11866581-?		2E-8				NR [6786993] (imputed)	N
1089	chr16	66165066	66165067	rs13334594	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	16q21	NR	rs13334594-?		2E-9				NR [520857]	N
1089	chr16	66183382	66183383	rs764589	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		CDH5	rs764589-T	0.09	2E-6				Illumina [1679420] (imputed)	N
1090	chr16	66212504	66212505	rs235115	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q21	NR	rs235115-?	NR	7E-8				Affymetrix [NR]	N
1090	chr16	66227533	66227534	rs57506338	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	16q21		rs57506338-?	NR	2E-7		17.1578	[16.08-18.23]	NR [673172]	N
1090	chr16	66243754	66243755	rs235141	30596066	Kong LL	2018-11-01	Ann Transl Med	Genome-wide association study identifies RBFOX1 locus influencing brain glucose metabolism.	Brain glucose metabolism (fluorodeoxyglucose uptake)	37 European ancestry Alzheimer's disease cases, 126 European ancestry individuals with mild cognitive impairment, 59 European ancestry controls	NA	16q21	NR	rs235141-?	NR	4E-7				Illumina [319792]	N
1090	chr16	66263907	66263908	rs79533753	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q21	CDH5	rs79533753-A	0.0133754429946309	8E-6	(F_Sutterellaceae_HB)	1.39197	[0.78-2] unit decrease	Illumina [7711310] (imputed)	N
1090	chr16	66271299	66271300	rs74450770	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	16q21	LINC00922, CDH5	rs74450770-T	NR	2E-7		0.074	[0.047-0.101] unit decrease	Illumina [27700000] (imputed)	N
1090	chr16	66300323	66300324	rs7194804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q21		rs7194804-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1091	chr16	66347294	66347295	rs8059293	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	16q21	Intergenic	rs8059293-?		7E-6		2.06134	[NR] unit increase	Illumina [575353]	N
1091	chr16	66424234	66424235	rs2304527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q21	CDH5	rs2304527-G	0.328446	7E-10		0.0147649525	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr16	66432423	66432424	rs3826229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q21	CDH5	rs3826229-T	0.344662	2E-9		0.014233207	[0.0096-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1092	chr16	66461926	66461927	rs117365265	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q21		rs117365265-G	0.97736	2E-11		0.0882271	[0.062-0.114] unit increase	NR [11722792] (imputed)	N
1092	chr16	66461926	66461927	rs117365265	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q21		rs117365265-G	0.97736	2E-8		0.0692802	[0.045-0.094] unit increase	NR [11722792] (imputed)	N
1092	chr16	66461926	66461927	rs117365265	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q21		rs117365265-G	0.97736	4E-11		0.0861675	[0.061-0.112] unit increase	NR [11722792] (imputed)	N
1092	chr16	66510453	66510454	rs116925373	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q21	NR	rs116925373-?	NR	4E-9	(AGRP)	1.22401	[0.82-1.63] unit increase	Illumina [11901634] (imputed)	N
1092	chr16	66583704	66583705	rs3743714	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16q21	NR	rs3743714-?	NR	7E-6	(EA)	0.4757	[0.27-0.68] unit decrease	Illumina [up to 11892802] (imputed)	N
1093	chr16	66638244	66638245	rs35320143	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	16q22.1	NR	rs35320143-?		9E-6		0.09	unit decrease	Illumina [1211988] (imputed)	N
1093	chr16	66643175	66643176	rs355938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.1		rs355938-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1093	chr16	66670986	66670987	rs180908923	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs180908923-?	NR	2E-20	(AGRP)	2.76749	[2.18-3.35] unit increase	Illumina [11901634] (imputed)	N
1093	chr16	66709862	66709863	rs147217681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q22.1		rs147217681-T	NR	2E-14		0.0435	[0.032-0.055] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1094	chr16	66720205	66720206	rs12927987	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q22.1		rs12927987-T	0.52	2E-8				NR [NR] (imputed)	N
1094	chr16	66720205	66720206	rs12927987	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q22.1		rs12927987-T	0.52	1E-8		0.009	% increase	NR [NR] (imputed)	N
1094	chr16	66750039	66750040	rs9926649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.1		rs9926649-T	0.0528	2E-8		0.0177	[0.012-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1094	chr16	66766896	66766897	rs111508783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q22.1	NR	rs111508783-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1094	chr16	66781039	66781040	rs146550789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q22.1		rs146550789-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1094	chr16	66785603	66785604	rs9929143	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q22.1	NR	rs9929143-C	0.934838	4E-8		0.0225715	[0.015-0.031] unit increase	NR [NR]	N
1094	chr16	66797853	66797854	rs8061964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.1	Intergenic	rs8061964-A	0.5932	5E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1094	chr16	66815711	66815712	rs182937102	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGRP	5,362 Icelandic ancestry individuals	NA	16q22.1		rs182937102-T	0.01087	1E-13		0.653123	[0.48-0.83] unit decrease	Illumina [7506463] (imputed)	N
1095	chr16	66906223	66906224	rs6499102	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q22.1	NAE1	rs6499102-A	0.0589605	2E-18		0.0351642	[0.027-0.043] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr16	66906223	66906224	rs6499102	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q22.1	NAE1	rs6499102-A	0.0589872	3E-19		0.0372104	[0.029-0.045] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr16	66911897	66911898	rs77234291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs77234291-G	NR	3E-9		0.059	[0.04-0.078] unit increase	Affymetrix [9000000] (imputed)	N
1095	chr16	66911897	66911898	rs77234291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q22.1	PDP2	rs77234291-A	0.983687	7E-10		0.0459533	[0.031-0.061] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr16	66911897	66911898	rs77234291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q22.1	PDP2	rs77234291-A	0.983691	1E-9		0.046634	[0.032-0.062] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr16	66914491	66914492	rs45474499	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16q22.1	PDP2	rs45474499-T	0.0469	3E-21		0.3433	[0.27-0.41] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1095	chr16	66937577	66937578	rs76765173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs76765173-A	NR	4E-15		0.0416	[0.031-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1095	chr16	66937577	66937578	rs76765173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs76765173-A	NR	1E-16		0.0439	[0.034-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1095	chr16	66944179	66944180	rs34621310	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	CDH16	rs34621310-T	NR	8E-7				Affymetrix, Illumina [NR] (imputed)	N
1095	chr16	66944179	66944180	rs34621310	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	CDH16	rs34621310-T	NR	4E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1095	chr16	66944179	66944180	rs34621310	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	CDH16	rs34621310-T	NR	4E-7				Affymetrix, Illumina [NR] (imputed)	N
1095	chr16	66944179	66944180	rs34621310	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	CDH16	rs34621310-T	NR	2E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1095	chr16	66944179	66944180	rs34621310	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	CDH16	rs34621310-T	NR	5E-7	(AA)	0.027	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1095	chr16	66951782	66951783	rs2271025	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	16q22.1	intergenic	rs2271025-G	0.92	2E-13		0.36	unit decrease	Illumina [5270624] (imputed)	N
1095	chr16	66956609	66956610	rs58020246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q22.1	RRAD	rs58020246-C	NR	4E-8		0.0548938	[0.035-0.075] unit decrease	Affymetrix [321114] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.1		rs28382814-C	0.95767	2E-8		0.057908	[0.038-0.078] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	1E-12		0.0647993	[0.047-0.083] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	3E-9		0.0554345	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	2E-8		0.0549375	[0.036-0.074] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.1		rs28382814-C	0.95767	1E-8		0.0575693	[0.038-0.077] unit decrease	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	1E-14		0.0802947	[0.06-0.101] unit decrease	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	4E-11		0.0603367	[0.042-0.078] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	9E-14		0.0693337	[0.051-0.088] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957682	1E-12		0.0653896	[0.047-0.083] unit decrease	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	2E-15		0.0784675	[0.059-0.098] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	4E-16		0.0750397	[0.057-0.093] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	1E-8		0.0540431	[0.035-0.073] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	2E-12		0.0638804	[0.046-0.082] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	7E-12		0.0632909	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	3E-11		0.062564	[0.044-0.081] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	5E-14		0.0686457	[0.051-0.086] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	1E-8		0.0556956	[0.037-0.075] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957682	6E-13		0.0749039	[0.055-0.095] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	5E-15		0.081796	[0.061-0.102] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	5E-9		0.056263	[0.037-0.075] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	3E-15		0.0723628	[0.054-0.09] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	6E-14		0.0702286	[0.052-0.089] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	6E-11		0.0663692	[0.047-0.086] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	5E-9		0.0561003	[0.037-0.075] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	1E-14		0.0708467	[0.053-0.089] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	2E-9		0.0553991	[0.037-0.073] unit increase	NR [11722792] (imputed)	N
1095	chr16	66971779	66971780	rs28382814	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q22.1		rs28382814-C	0.957675	4E-8		0.0523161	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
1096	chr16	66997755	66997756	rs71647892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs71647892-C	NR	7E-10		0.0715	[0.049-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr16	66999369	66999370	rs13336470	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.1	CES3	rs13336470-A	0.84165	2E-17		0.0223278	[0.017-0.027] unit decrease	NR [13737936] (imputed)	N
1096	chr16	66999369	66999370	rs13336470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.1		rs13336470-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1096	chr16	67005608	67005609	rs71649607	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs71649607-?	NR	1E-16		0.0226547	[0.017-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1096	chr16	67007651	67007652	rs71649618	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs71649618-?	NR	3E-20	(AGRP)	2.66316	[2.1-3.23] unit increase	Illumina [11901634] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16q22.1		rs12935169-T	NR	5E-10		0.0587	[0.04-0.077] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q22.1	CES3	rs12935169-T	0.016587	2E-10		0.057339504	[0.04-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q22.1	CES3	rs12935169-T	0.0165689999999999	5E-12		0.06192287	[0.044-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs12935169-T	0.0159229	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q22.1	NR	rs12935169-T	0.016328	4E-13		0.056148	[0.041-0.071] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1096	chr16	67010112	67010113	rs12935169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q22.1	NR	rs12935169-C	0.983485	2E-15		0.06158	[0.046-0.077] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1096	chr16	67013655	67013656	rs117865832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.1		rs117865832-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1096	chr16	67037053	67037054	rs61744399	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	CES4A	rs61744399-C		5E-9		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1096	chr16	67059546	67059547	rs118064296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q22.1		rs118064296-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1096	chr16	67059546	67059547	rs118064296	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q22.1	NR	rs118064296-C	0.0384353	5E-15		0.0634008	[0.048-0.079] unit decrease	NR [19129689] (imputed)	N
1096	chr16	67087406	67087407	rs115253693	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q22.1	CBFB	rs115253693-C	0.0663	4E-13		0.05137837	[0.037-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1097	chr16	67114329	67114330	rs74702191	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs74702191-A	NR	7E-11		0.0455	[0.032-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1097	chr16	67116600	67116601	rs140538758	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	16q22.1	NR	rs140538758-?	NR	6E-7		1.5044404	[1.28-1.77]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1097	chr16	67121500	67121501	rs193281485	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs193281485-?	NR	1E-18	(AGRP)	2.69873	[2.1-3.3] unit increase	Illumina [11901634] (imputed)	N
1097	chr16	67122793	67122794	rs142803248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	16q22.1		rs142803248-C	0.013761	1E-9		0.104489	[0.071-0.138] unit increase	Illumina [13476266] (imputed)	N
1097	chr16	67122793	67122794	rs142803248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	16q22.1		rs142803248-C	0.013708	4E-12		0.120992	[0.087-0.155] unit increase	Illumina [13476299] (imputed)	N
1097	chr16	67130222	67130223	rs73593330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q22.1		rs73593330-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1097	chr16	67144114	67144115	rs115599330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs115599330-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1097	chr16	67146701	67146702	rs8064088	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q22.1	NR	rs8064088-?	NR	1E-30				Affymetrix [NR]	N
1097	chr16	67206172	67206173	rs117608715	34380431	Tsai CK	2021-08-11	J Headache Pain	Identifying genetic variants for age of migraine onset in a Han Chinese population in Taiwan.	Migraine with aura (age at onset)	167 Han Chinese ancestry individuals	NA	16q22.1		rs117608715-?	NR	2E-8		22.74	unit increase	Affymetrix [NR]	N
1097	chr16	67213922	67213923	rs13339140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q22.1	KIAA0895L	rs13339140-T	0.0609	2E-16		0.06071101	[0.046-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1097	chr16	67213949	67213950	rs61733768	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.1	KIAA0895L	rs61733768-G	0.97047	1E-27		0.0625418	[0.051-0.074] unit increase	NR [13737936] (imputed)	N
1097	chr16	67218374	67218375	rs16957210	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16q22.1		rs16957210-G	NR	2E-9		0.32	[0.22-0.42] unit increase	Illumina [97506867]	N
1097	chr16	67219106	67219107	rs9939768	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	EXOC3L1	rs9939768-C		1E-8		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1097	chr16	67221443	67221444	rs34746889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs34746889-G	0.983019	8E-15				Affymetrix, Illumina [23467995] (imputed)	N
1097	chr16	67225500	67225501	rs3729639	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	16q22.1	LCAT	rs3729639-T	0.44	2E-11		0.09	[0.064-0.116] unit increase	Affymetrix [~ 2740000] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	16q22.1		rs61735430-?	NR	2E-10		0.495389	[0.34-0.65] unit increase	NR [9800000] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	16q22.1		rs61735430-?	NR	9E-10		0.490601	[0.33-0.65] unit increase	NR [9800000] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	16q22.1		rs61735430-?	NR	9E-13		0.545925	[0.39-0.7] unit increase	NR [9800000] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	E2F4	rs61735430-A	1.75000000000036E-4	5E-14		0.7640073	[0.57-0.96] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	E2F4	rs61735430-A	1.76999999999983E-4	4E-10		0.6319168	[0.43-0.83] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	E2F4	rs61735430-A	1.75000000000036E-4	1E-15		0.76908	[0.59-0.95] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67231975	67231976	rs61735430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1	E2F4	rs61735430-A	1.75000000000036E-4	2E-12		0.6965251	[0.5-0.89] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67232359	67232360	rs9932087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	E2F4	rs9932087-C	0.06212	5E-27		0.066282935	[0.054-0.078] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67232359	67232360	rs9932087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	E2F4	rs9932087-C	0.062101	8E-15		0.051850274	[0.039-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67232359	67232360	rs9932087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs9932087-C	0.0578502	5E-44				Affymetrix, Illumina [24246363] (imputed)	N
1097	chr16	67232359	67232360	rs9932087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.1		rs9932087-?	NR	8E-27				NR [~ 8900000] (imputed)	N
1097	chr16	67233265	67233266	rs12923138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	16q22.1	ELMO3	rs12923138-C	NR	4E-8		0.0175082	[0.011-0.024] unit decrease	Affymetrix [127266] (imputed)	N
1097	chr16	67233265	67233266	rs12923138	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	16q22.1	NR	rs12923138-C		5E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1097	chr16	67233265	67233266	rs12923138	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	16q22.1	ELMO3	rs12923138-A	0.589	1E-7		0.07	[0.045-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr16	67238669	67238670	rs181042996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q22.1		rs181042996-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1097	chr16	67239311	67239312	rs113839546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	MIR328	rs113839546-T	0.031914	5E-12		0.06543009	[0.047-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67239386	67239386	rs140466045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	MIR328	rs140466045-TTTTG	0.062363	3E-73		0.0593715	[0.051-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67239386	67239386	rs140466045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1	MIR328	rs140466045-TTTTG	0.062348	3E-39		0.061729234	[0.052-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr16	67239386	67239386	rs140466045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16q22.1	NR	rs140466045-I	0.062355	8E-46		0.058177	[0.05-0.066] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1098	chr16	67250991	67250992	rs55691975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	AC040160.1, LRRC29	rs55691975-T	0.00475300000000001	1E-42		0.24151614	[0.21-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67250991	67250992	rs55691975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	AC040160.1, LRRC29	rs55691975-T	0.00473599999999996	3E-34		0.2205564	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67250991	67250992	rs55691975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	AC040160.1, LRRC29	rs55691975-T	0.004749	3E-37		0.140814	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67250991	67250992	rs55691975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1	AC040160.1, LRRC29	rs55691975-T	0.00474699999999995	2E-32		0.19864507	[0.17-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67253518	67253519	rs143264468	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q22.1	LRRC29	rs143264468-C	0.001	2E-9		1.1551353	[0.78-1.53] mg/dl decrease	Illumina [24111857] (imputed)	N
1098	chr16	67254840	67254841	rs116008080	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q22.1	NR	rs116008080-A	0.0232008	6E-10		0.0641878	[0.044-0.084] unit increase	NR [19129689] (imputed)	N
1098	chr16	67269997	67269998	rs147330708	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q22.1	NR	rs147330708-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1098	chr16	67269997	67269998	rs147330708	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q22.1	NR	rs147330708-?	NR	6E-24				Affymetrix [~ 8270000] (imputed)	N
1098	chr16	67273172	67273173	rs150016766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q22.1	FHOD1, SLC9A5	rs150016766-A	NR	4E-8		0.0579725	[0.037-0.079] unit decrease	Affymetrix [321114] (imputed)	N
1098	chr16	67281661	67281662	rs8050731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	SLC9A5	rs8050731-A	0.036905	1E-10		0.05140068	[0.036-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1098	chr16	67298162	67298163	rs8053031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs8053031-G	NR	3E-13		0.0489	[0.036-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1098	chr16	67298162	67298163	rs8053031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs8053031-G	NR	1E-9		0.0407	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1098	chr16	67304880	67304881	rs376301186	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q22.1		rs376301186-?	NR	1E-23		2.12358	[1.7-2.54] unit decrease	NR [9800000] (imputed)	N
1098	chr16	67304880	67304881	rs376301186	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	16q22.1		rs376301186-?	NR	2E-19		1.952	[1.51-2.39] unit decrease	NR [9800000] (imputed)	N
1098	chr16	67305512	67305513	rs7186310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q22.1	SLC9A5	rs7186310-C	0.109497	7E-14		0.02683836	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67305512	67305513	rs7186310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q22.1	SLC9A5	rs7186310-C	0.109499	9E-13		0.025674187	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67305512	67305513	rs7186310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q22.1	SLC9A5	rs7186310-C	0.109549	2E-11		0.024032846	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67305512	67305513	rs7186310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q22.1	SLC9A5	rs7186310-C	0.109546	1E-10		0.022892011	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1098	chr16	67309634	67309635	rs187144829	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q22.1	SLC9A5, PLEKHG4	rs187144829-?		5E-40		1.5974	[1.36-1.83] unit decrease	Illumina [31500000] (imputed)	N
1098	chr16	67310542	67310543	rs114934911	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs114934911-?	NR	2E-40		0.0772166	[0.065-0.089] unit increase	Affymetrix [20259828] (imputed)	N
1098	chr16	67311061	67311062	rs143152148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q22.1		rs143152148-C	NR	1E-25		0.1017	[0.083-0.121] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1098	chr16	67311766	67311767	rs8050745	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.1	PLEKHG4	rs8050745-A	0.073	2E-15	(Tubulin polymerization-promoting protein family member 2, TPPP2.12800.5.3)	0.37	[0.27-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
1098	chr16	67313804	67313805	rs141261466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q22.1	PLEKHG4	rs141261466-A	NR	1E-9		0.0620703	[0.042-0.082] unit decrease	Affymetrix [321114] (imputed)	N
1098	chr16	67316233	67316234	rs11860295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q22.1	PLEKHG4	rs11860295-T	NR	7E-11		0.0354403	[0.025-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1098	chr16	67316599	67316600	rs7200919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	16q22.1	PLEKHG4	rs7200919-A	NR	3E-8		0.0174465	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1098	chr16	67322117	67322118	rs17680862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.1		rs17680862-?	NR	2E-39				NR [~ 8900000] (imputed)	N
1098	chr16	67322117	67322118	rs17680862	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs17680862-?	NR	8E-40		0.0821319	[0.069-0.095] unit increase	Affymetrix [20259828] (imputed)	N
1098	chr16	67322117	67322118	rs17680862	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q22.1	PLEKHG4	rs17680862-G	0.974194	1E-11	(women)	0.093378	[0.065-0.122] unit increase	NR [17166351] (imputed)	N
1098	chr16	67322117	67322118	rs17680862	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q22.1	PLEKHG4	rs17680862-G	0.974085	7E-20		0.0882287	[0.068-0.109] unit increase	NR [17166351] (imputed)	N
1098	chr16	67322117	67322118	rs17680862	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q22.1	PLEKHG4	rs17680862-G	0.973961	5E-8	(men)	0.0803599	[0.049-0.112] unit increase	NR [17166351] (imputed)	N
1098	chr16	67322412	67322413	rs145498856	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs145498856-?	NR	5E-20	(AGRP)	2.69781	[2.12-3.27] unit increase	Illumina [11901634] (imputed)	N
1098	chr16	67331853	67331854	rs9930024	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q22.1	KCTD19	rs9930024-T	0.5757	1E-6		0.0333	[0.02-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1098	chr16	67332364	67332365	rs13334364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs13334364-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	9E-7	(women)	0.0651	[0.039-0.091] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	5E-9		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	2E-9	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	8E-11		0.0599	[0.042-0.078] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q22.1	KCTD19	rs16957304-A	0.9298	7E-9	(women)	0.069	[0.046-0.092] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q22.1	KCTD19	rs16957304-A	0.9561	5E-6	(EA,women)	0.0596	[0.034-0.085] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1098	chr16	67334968	67334969	rs16957304	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q22.1	KCTD19	rs16957304-A	0.9561	2E-8	(EA)	0.0591	[0.038-0.08] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1098	chr16	67349477	67349478	rs138453996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	16q22.1		rs138453996-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1098	chr16	67351695	67351696	rs139260482	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGRP	5,362 Icelandic ancestry individuals	NA	16q22.1		rs139260482-T	0.04075	6E-24		0.464517	[0.37-0.55] unit increase	Illumina [7506463] (imputed)	N
1098	chr16	67352964	67352965	rs11862222	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPPP2	5,364 Icelandic ancestry individuals	NA	16q22.1		rs11862222-A	0.07461	7E-16		0.281251	[0.21-0.35] unit decrease	Illumina [7506463] (imputed)	N
1098	chr16	67366808	67366809	rs28526086	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.1	AGRP	rs28526086-A	0.95140625	2E-18	(AGRP, 2813_11_2)	0.4967866	[0.39-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1099	chr16	67374178	67374179	rs78094270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.1		rs78094270-?	NR	6E-27				NR [~ 8900000] (imputed)	N
1099	chr16	67377215	67377216	rs12928503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q22.1		rs12928503-T	NR	3E-8		0.0478	[0.031-0.065] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1099	chr16	67377215	67377216	rs12928503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q22.1		rs12928503-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1099	chr16	67380549	67380550	rs7184253	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q22.1	LRRC36	rs7184253-?	0.8755	2E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1099	chr16	67380549	67380550	rs7184253	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.1	ZDHHC1, HSD11B2, ATP6V0D1, LRRC36, AGRP, TPPP3, FAM65A, KCTD19, SLC9A5, PLEKHG4, RN7SKP118, RNU1-123P, RP11-297D21.2, RP11-297D21.4, CTD-2012K14.8	rs7184253-C	0.05215647	7E-18	(EA, Agouti-related protein)	0.8213	[0.64-1] unit increase	Affymetrix [509946]	N
1099	chr16	67391617	67391618	rs8055190	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	16q22.1	NR	rs8055190-C	0.96	3E-14		0.034	[0.025-0.043] unit increase	Affymetrix [2446094] (imputed)	N
1099	chr16	67391617	67391618	rs8055190	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	16q22.1	NR	rs8055190-C	0.96	5E-8				Affymetrix [2446094] (imputed)	N
1099	chr16	67391617	67391618	rs8055190	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q22.1	LRRC36	rs8055190-C	0.8731	4E-9		0.0529	[0.035-0.071] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1099	chr16	67391617	67391618	rs8055190	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	16q22.1	LRRC36	rs8055190-C	0.8731	8E-8		0.0557	[0.035-0.076] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1099	chr16	67397579	67397580	rs9922085	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	16q22.1	LRRC36	rs9922085-G	0.9344	1E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67397579	67397580	rs9922085	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	16q22.1	LRRC36	rs9922085-G	0.9563	8E-9		0.0433	[0.029-0.058] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67397579	67397580	rs9922085	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	16q22.1	LRRC36	rs9922085-G	0.9425	2E-6		0.0321	[0.019-0.045] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67397579	67397580	rs9922085	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	16q22.1	LRRC36	rs9922085-G	0.9383	4E-13		0.0341	[0.025-0.043] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67397579	67397580	rs9922085	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	16q22.1	LRRC36	rs9922085-G	0.9563	4E-11		0.0361	[0.025-0.047] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67409179	67409180	rs8052655	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	16q22.1	LRRC36	rs8052655-G	0.9349	4E-9		0.0381	[0.025-0.051] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67409179	67409180	rs8052655	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	16q22.1	LRRC36	rs8052655-G	0.9566	3E-9		0.0443	[0.03-0.059] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67409179	67409180	rs8052655	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	16q22.1	LRRC36	rs8052655-G	0.9427	6E-6		0.0303	[0.017-0.043] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67409179	67409180	rs8052655	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	16q22.1	LRRC36	rs8052655-G	0.9387	6E-13		0.0339	[0.025-0.043] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67409179	67409180	rs8052655	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	16q22.1	LRRC36	rs8052655-G	0.9566	7E-11		0.0355	[0.025-0.046] unit increase	Affymetrix, Illumina [at least 228985]	N
1099	chr16	67415082	67415083	rs142444346	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Agouti-related protein levels	21,758 European ancestry individuals	9,173 individuals	16q22.1		rs142444346-T	0.0048	5E-62		2.5212	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1099	chr16	67418859	67418860	rs8058996	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q22.1	NR	rs8058996-?	NR	2E-6				Affymetrix [NR]	N
1099	chr16	67420327	67420328	rs8044588	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	16q22.1	NR	rs8044588-C	0.0886077	2E-9		0.0284528	[0.019-0.038] unit increase	Affymetrix [16580851] (imputed)	N
1099	chr16	67440288	67440289	rs8058306	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	16q22.1	ZDHHC1	rs8058306-A	0.01	9E-7	(right arm)	1.39	[0.84-1.94] g/cm2 decrease	Illumina [> 1100000]	N
1099	chr16	67449638	67449639	rs117903946	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q22.1	ZDHHC1	rs117903946-G	0.967498	3E-16		0.0322531	[0.025-0.04] unit decrease	Affymetrix [12370749]	N
1099	chr16	67452505	67452506	rs8060596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q22.1		rs8060596-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1099	chr16	67458250	67458251	rs6499129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q22.1		rs6499129-C	0.098581	4E-18		0.032857634	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr16	67458250	67458251	rs6499129	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	16q22.1	HSD11B2, ZDHHC1	rs6499129-A	0.434	5E-8	(Women)	0.047	[0.025-0.069] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1099	chr16	67476571	67476572	rs8056260	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	16q22.1	ATP6V0D1	rs8056260-G	0.0435819	3E-11		0.14856783	[0.1-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1099	chr16	67488876	67488877	rs1471142	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	16q22.1	ATP6V0D1	rs1471142-G	0.05	1E-6		1.73		Illumina [8974355] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	3E-8		0.0582864	[0.038-0.079] unit increase	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	1E-14		0.0818062	[0.061-0.103] unit increase	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	4E-18		0.0904556	[0.07-0.111] unit increase	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	2E-12		0.0700739	[0.051-0.09] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	4E-20		0.0966667	[0.076-0.117] unit increase	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	3E-16		0.087842	[0.067-0.109] unit increase	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	5E-10		0.0620802	[0.043-0.082] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	2E-14		0.0818368	[0.061-0.103] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	6E-24		0.106521	[0.086-0.127] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	2E-17		0.084474	[0.065-0.104] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	4E-12		0.0759136	[0.054-0.097] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	3E-18		0.0917803	[0.071-0.112] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	9E-24		0.104833	[0.084-0.125] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67506246	67506247	rs8044652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs8044652-T	0.0370546	4E-15		0.0786586	[0.059-0.098] unit decrease	NR [11722792] (imputed)	N
1100	chr16	67517537	67517538	rs35079605	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs35079605-?	NR	8E-20	(AGRP)	2.67168	[2.1-3.25] unit increase	Illumina [11901634] (imputed)	N
1100	chr16	67519937	67519937	rs537879524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q22.1	RP11-297D21.4	rs537879524-CA	0.060191	5E-10		0.0306948	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr16	67519937	67519937	rs537879524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16q22.1	NR	rs537879524-I	0.060304	2E-12		0.03336	[0.024-0.043] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1100	chr16	67521820	67521825	rs564864539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	AGRP	rs564864539-C	0.00357600000000002	1E-19		0.17802285	[0.14-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr16	67521820	67521825	rs564864539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	AGRP	rs564864539-C	0.00358899999999995	2E-19		0.17825258	[0.14-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr16	67521820	67521825	rs564864539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	AGRP	rs564864539-C	0.00358700000000001	8E-15		0.152751	[0.12-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr16	67521820	67521825	rs564864539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1	AGRP	rs564864539-C	0.00358800000000004	8E-14		0.14395931	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr16	67542152	67542152	rs113699397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1		rs113699397-CT	0.053049	8E-20		0.04654218	[0.037-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr16	67543521	67543522	rs60697456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.1	AGRP	rs60697456-A	0.042	7E-15	(Agouti-related protein, AGRP.2813.11.2)	0.47	[0.35-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1100	chr16	67549652	67549653	rs2089401	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	16q22.1	CTD-2012K14.1, ZDHHC1, HSD11B2, ATP6V0D1	rs2089401-G	0.899	8E-7	(males)	1.04	[0.63-1.45] unit decrease	Illumina [9955952] (imputed)	N
1100	chr16	67554339	67554340	rs11867039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q22.1	FAM65A	rs11867039-G	0.0487260000000001	7E-11		0.03492385	[0.024-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr16	67559457	67559458	rs77971272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q22.1		rs77971272-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1100	chr16	67560612	67560613	rs7196853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs7196853-T	0.885177	2E-22				Affymetrix, Illumina [17210439] (imputed)	N
1100	chr16	67560612	67560613	rs7196853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q22.1	NR	rs7196853-T	0.896389	2E-24		0.032252	[0.026-0.038] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1100	chr16	67560612	67560613	rs7196853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q22.1		rs7196853-?	NR	6E-26				NR [~ 8900000] (imputed)	N
1100	chr16	67572129	67572130	rs567068501	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.1	FAM65A	rs567068501-C	0.997081	5E-15		0.0971476	[0.073-0.121] unit increase	NR [13737936] (imputed)	N
1100	chr16	67572129	67572130	rs567068501	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs567068501-?	NR	1E-31		0.153015	[0.13-0.18] unit increase	Affymetrix [20259828] (imputed)	N
1100	chr16	67573366	67573367	rs9934328	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	CTCF, FAM65A	rs9934328-C		1E-10		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1100	chr16	67576035	67576036	rs183208454	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q22.1	NR	rs183208454-T	0.000761277	5E-9		1.3088803	[0.87-1.75] mg/dl decrease	Illumina [24111857] (imputed)	N
1100	chr16	67578395	67578396	rs1210978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs1210978-T	NR	3E-25		0.0671	[0.054-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1100	chr16	67578395	67578396	rs1210978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs1210978-T	NR	8E-26		0.068	[0.055-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1100	chr16	67605124	67605125	rs77172747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs77172747-A	NR	2E-14		0.0599	[0.045-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1100	chr16	67605124	67605125	rs77172747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs77172747-A	NR	3E-12		0.0549	[0.04-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1100	chr16	67616808	67616809	rs118187571	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	16q22.1	NR	rs118187571-T	0.02	8E-7		1564.28	[944.98-2183.58] unit increase	Illumina [27449291] (imputed)	N
1101	chr16	67658034	67658034	rs113028056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q22.1	CTCF	rs113028056-ATATG	0.075248	1E-13		0.031825382	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr16	67660901	67660902	rs80190634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	16q22.1		rs80190634-A	NR	2E-11		0.148	[0.1-0.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1101	chr16	67660901	67660902	rs80190634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs80190634-A	0.0425961	8E-10				Affymetrix, Illumina [21126107] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16q22.1		rs117556162-G	0.94	3E-11				Affymetrix [10369434] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.1	NR	rs117556162-A	NR	5E-10		0.0331	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.1	NR	rs117556162-A	NR	1E-19		0.0482	[0.038-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q22.1	RLTPR	rs117556162-A	0.0592160000000001	9E-24		0.047295395	[0.038-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs117556162-A	0.0556264	1E-26				Affymetrix, Illumina [23472807] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q22.1	NR	rs117556162-A	0.05762	3E-27		0.044471	[0.036-0.053] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1101	chr16	67680805	67680806	rs117556162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q22.1		rs117556162-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1101	chr16	67680955	67680956	rs60990105	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q22.1	PSKH1	rs60990105-?	NR	2E-30		0.01874	[0.015-0.022] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1101	chr16	67682579	67682580	rs9972635	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16q22.1	NR	rs9972635-T	0.9392	8E-9		0.0842	[0.056-0.113] unit increase	Illumina [~ 10600000] (imputed)	N
1101	chr16	67690687	67690688	rs141279119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q22.1	RLTPR	rs141279119-T	6.31000000000048E-4	7E-14		0.3460645	[0.26-0.44] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr16	67690687	67690688	rs141279119	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q22.1	NR	rs141279119-G	0.000763783	7E-9		1.3427596	[0.89-1.8] mg/dl decrease	Illumina [24111857] (imputed)	N
1101	chr16	67691667	67691668	rs6979	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	ACD	rs6979-G		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1101	chr16	67693796	67693797	rs7204371	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	PARD6A	rs7204371-A	0.048	4E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1101	chr16	67695482	67695483	rs139372052	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16q22.1		rs139372052-T	0.995	2E-9		0.46	[-0.61--0.31] % decrease	Affymetrix [NR] (imputed)	N
1101	chr16	67700068	67700069	rs138635727	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs138635727-?	NR	1E-17	(AGRP)	2.77228	[2.14-3.41] unit increase	Illumina [11901634] (imputed)	N
1101	chr16	67708129	67708130	rs61421564	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16q22.1	NR	rs61421564-T		1E-10		0.1	[0.061-0.139] unit increase	NR [NR]	N
1101	chr16	67708896	67708897	rs12449157	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs12449157-?	NR	2E-6		0.6149674	[0.36-0.87] unit increase	Illumina [31978362] (imputed)	N
1101	chr16	67708896	67708897	rs12449157	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	16q22.1	GFOD2, LCAT	rs12449157-G	0.17	2E-7		0.02	[0.01-0.03] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
1101	chr16	67711524	67711525	rs570240269	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs570240269-G	0.998145	5E-9		0.278241	[0.19-0.37] unit decrease	NR [11722792] (imputed)	N
1101	chr16	67727068	67727069	rs12927959	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q22.1	NR	rs12927959-G	0.299768	3E-11		0.0227173	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
1101	chr16	67733015	67733016	rs112210483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q22.1	GFOD2	rs112210483-T	0.026288	7E-13		0.053543337	[0.039-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1101	chr16	67743423	67743424	rs74900413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.1	NR	rs74900413-A	NR	5E-9		0.0568	[0.038-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1101	chr16	67743423	67743424	rs74900413	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Agouti-related protein levels	21,758 European ancestry individuals	9,173 individuals	16q22.1		rs74900413-A	0.018	2E-19		0.3202	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1101	chr16	67744292	67744292	rs143133208	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q22.1		rs143133208-?	NR	2E-16		0.084	[0.064-0.104] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1102	chr16	67785843	67785844	rs184527591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.1		rs184527591-A	0.997662	1E-8		0.24721	[0.16-0.33] unit increase	NR [11722792] (imputed)	N
1102	chr16	67797575	67797576	rs201645977	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	16q22.1	GFOD2, C16orf48, TSNAXIP1, RANBP10	rs201645977-?	0.84537	9E-7	(males)	0.877517	[0.53-1.23] unit decrease	Illumina [9955952] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q22.1		rs73591976-A	NR	1E-20		0.0274	[0.022-0.033] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q22.1	NR	rs73591976-A	0.10224	3E-30		0.035436	[0.029-0.042] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q22.1	NR	rs73591976-A	0.102153	4E-27		0.033474	[0.027-0.04] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs73591976-?	NR	2E-14		1.183246	[0.88-1.49] unit increase	Illumina [31978362] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73591976-C	NR	1E-45		0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73591976-C	0.886	3E-38	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1102	chr16	67811589	67811590	rs73591976	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	16q22.1	RANBP10, LCAT	rs73591976-A	0.12	9E-26		0.096	[0.078-0.114] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1102	chr16	67812038	67812039	rs112894876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q22.1		rs112894876-C	NR	4E-21		0.0287	[0.023-0.035] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1102	chr16	67812038	67812039	rs112894876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q22.1	RANBP10	rs112894876-C	0.096238	3E-27		0.040601064	[0.033-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1102	chr16	67828077	67828078	rs138748841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q22.1		rs138748841-G	NR	1E-16		0.0425	[0.033-0.052] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1102	chr16	67828077	67828078	rs138748841	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	16q22.1		rs138748841-A	0.941	1E-19				Affymetrix [10369434] (imputed)	N
1102	chr16	67828077	67828078	rs138748841	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	16q22.1		rs138748841-A	0.941	9E-15				Affymetrix [10369434] (imputed)	N
1102	chr16	67829536	67829537	rs150850722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs150850722-A	0.0890106	6E-28				Affymetrix, Illumina [24653286] (imputed)	N
1102	chr16	67829536	67829537	rs150850722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs150850722-A	0.0894548	3E-24				Affymetrix, Illumina [24558453] (imputed)	N
1102	chr16	67829763	67829767	rs147766666	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	16q22.1	RANBP10	rs147766666-T	0.0683	2E-11		0.0475842	[0.034-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1102	chr16	67829763	67829767	rs147766666	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	16q22.1	RANBP10	rs147766666-T	0.0683	4E-11		0.04652661	[0.033-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1102	chr16	67845101	67845106	rs796083684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q22.1	TSNAXIP1	rs796083684-CAAGCATCCT	NR	3E-9		0.0434472	[0.029-0.058] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr16	67845101	67845106	rs796083684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q22.1	TSNAXIP1	rs796083684-CAAGCATCCT	NR	7E-10		0.0451634	[0.031-0.059] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr16	67845101	67845106	rs796083684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q22.1	TSNAXIP1	rs796083684-CAAGCATCCT	NR	6E-13		0.0531172	[0.039-0.068] unit decrease	Affymetrix [321114] (imputed)	N
1102	chr16	67845101	67845106	rs796083684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q22.1	TSNAXIP1	rs796083684-CAAGCATCCT	NR	4E-10		0.0461605	[0.032-0.061] unit decrease	Affymetrix [321169] (imputed)	N
1102	chr16	67850699	67850700	rs35316276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q22.1		rs35316276-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1102	chr16	67856469	67856469	rs368324587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	16q22.1		rs368324587-A	0.879569	2E-8		0.0362719	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
1102	chr16	67856469	67856469	rs368324587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.1		rs368324587-A	0.879569	5E-8		0.0351554	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
1102	chr16	67866782	67866783	rs73593810	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	16q22.1		rs73593810-T	0.13	2E-44		0.1743	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1102	chr16	67874700	67874701	rs78033862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.1		rs78033862-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1102	chr16	67876822	67876823	rs28647874	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16q22.1	THAP11	rs28647874-G	0.0917	1E-15		0.05511777	[0.042-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1102	chr16	67878068	67878069	rs139025869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	THAP11	rs139025869-G	5.88999999999951E-4	1E-14		0.3778268	[0.28-0.47] unit increase	Affymetrix [93095623] (imputed)	N
1102	chr16	67881988	67881989	rs75957286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs75957286-G	NR	5E-13		0.0609	[0.044-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr16	67881988	67881989	rs75957286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs75957286-G	NR	7E-12		0.0581	[0.041-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	67897486	67897487	rs1124324	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs1124324-C	NR	3E-47		0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67897486	67897487	rs1124324	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs1124324-C	0.883	3E-39	(EA)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67897486	67897487	rs1124324	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs1124324-C	0.86	1E-6	(Hispanic)	0.086	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67902069	67902070	rs2271293	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs2271293-?	NR	7E-9		1.021754	[0.68-1.37] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	67902069	67902070	rs2271293	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	16q22.1	CTCF, PRMT8	rs2271293-G	0.87	8E-16		0.13	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
1103	chr16	67902069	67902070	rs2271293	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	16q22.1	LCAT	rs2271293-A	0.11	9E-13		0.07	[0.01-0.13] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1103	chr16	67908712	67908713	rs56374641	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	16q22.1	NR	rs56374641-T	0.1344	2E-54				Affymetrix, Illumina [at least 2500000] (imputed)	N
1103	chr16	67911516	67911517	rs8060686	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs8060686-?	NR	3E-6		0.574885	[0.33-0.82] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	67911516	67911517	rs8060686	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	16q22.1	EDC4	rs8060686-T	0.81	2E-10	(HDL)	0.11	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
1103	chr16	67911516	67911517	rs8060686	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	16q22.1	EDC4	rs8060686-T	0.38	8E-6		0.0715	[0.04-0.103] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1103	chr16	67920048	67920049	rs73594554	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	intergenicN1L	rs73594554-A		1E-21		0.033	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1103	chr16	67922341	67922342	rs10468274	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	16q22.1		rs10468274-A	0.17	6E-9		0.94	[0.63-1.25] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1103	chr16	67923472	67923473	rs550548705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	PSKH1	rs550548705-C	0.094372	3E-9		0.023767233	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1103	chr16	67923472	67923473	rs550548705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	PSKH1	rs550548705-C	0.094394	2E-15		0.0284739	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1103	chr16	67923472	67923473	rs550548705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q22.1	PSKH1	rs550548705-C	0.0941	9E-10		0.03789093	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1103	chr16	67923472	67923473	rs550548705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q22.1	PSKH1	rs550548705-C	0.094	1E-9		0.03773051	[0.026-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1103	chr16	67924165	67924166	rs12448131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs12448131-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1103	chr16	67925434	67925435	rs73594556	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73594556-G	NR	6E-6		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67925434	67925435	rs73594556	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73594556-G	NR	8E-49		0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67925434	67925435	rs73594556	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73594556-G	0.88	3E-40	(EA)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67925434	67925435	rs73594556	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs73594556-G	0.858	3E-7	(Hispanic)	0.09	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67927123	67927124	rs7196789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q22.1		rs7196789-T	NR	5E-31		0.03	[0.025-0.035] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1103	chr16	67927123	67927124	rs7196789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs7196789-T	0.153251	3E-37				Affymetrix, Illumina [24332387] (imputed)	N
1103	chr16	67927239	67927240	rs35268848	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q22.1	PSKH1	rs35268848-A	0.0119	3E-13		0.0737	[0.054-0.093] unit increase	Affymetrix [18391927] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-A	NR	2E-11		0.0246	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-A	NR	7E-14		0.0276	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-A	NR	8E-74		0.0699	[0.062-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-A	NR	3E-64		0.0653	[0.058-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs16942887-?	NR	2E-14		1.158495	[0.86-1.45] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	16q22.1		rs16942887-A	0.1478	4E-19		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-G	NR	6E-6		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-G	NR	3E-48		0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-G	0.879	8E-40	(EA)	0.075	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs16942887-G	0.857	4E-7	(Hispanic)	0.088	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.1	LCAT	rs16942887-A	0.14	8E-54		0.083	[NR] unit increase	NR [NR] (imputed)	N
1103	chr16	67928041	67928042	rs16942887	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q22.1	LCAT	rs16942887-A	0.12	8E-33		1.27	[1.05-1.49] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1103	chr16	67934779	67934780	rs72790373	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q22.1	NR	rs72790373-T	0.0122	2E-9	(AKR1C2)	1.047	NR unit increase	Illumina [1671387] (imputed)	N
1103	chr16	67940349	67940350	rs55781197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q22.1	PSKH1	rs55781197-G	0.115344	5E-27		0.037236344	[0.03-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1103	chr16	67940349	67940350	rs55781197	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q22.1	PSKH1	rs55781197-A	0.884965	3E-88		0.0588019	[0.053-0.065] unit decrease	Affymetrix [NR] (imputed)	N
1103	chr16	67940349	67940350	rs55781197	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q22.1	PSKH1	rs55781197-A	0.88506	3E-75		0.056117	[0.05-0.062] unit decrease	Affymetrix [NR] (imputed)	N
1103	chr16	67942319	67942320	rs56070533	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.1	PSKH1	rs56070533-A	0.1512	9E-95		0.0779	[0.07-0.085] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1103	chr16	67954397	67954398	rs112434994	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q22.1	PSKH1	rs112434994-?	NR	1E-31		0.01626	[0.013-0.019] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1103	chr16	67955553	67955554	rs73594581	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q22.1		rs73594581-G	0.886297	7E-9		0.0377546	[0.025-0.051] unit decrease	NR [11722792] (imputed)	N
1103	chr16	67964202	67964203	rs1134760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q22.1	NR	rs1134760-C	0.169199	1E-39		0.032779	[0.028-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1103	chr16	67967877	67967878	rs7187289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.1		rs7187289-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1103	chr16	67971379	67971380	rs11574514	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	16q22.1	PSMB10	rs11574514-A	0.045	2E-7		1.44	[1.35-1.52]	Affymetrix, Illumina [1060934] (imputed)	N
1103	chr16	67974090	67974091	rs202017590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs202017590-A	NR	2E-10		0.7406	[0.51-0.97] unit decrease	Affymetrix [9000000] (imputed)	N
1103	chr16	67974090	67974091	rs202017590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs202017590-A	NR	8E-10		0.7086	[0.48-0.93] unit decrease	Affymetrix [9000000] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	5E-9		0.0620813	[0.041-0.083] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-17		0.0848873	[0.065-0.104] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-14		0.077692	[0.058-0.098] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	4E-13		0.0780673	[0.057-0.099] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966071	3E-9		0.0637435	[0.043-0.085] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966071	8E-9		0.0642111	[0.042-0.086] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-23		0.113431	[0.091-0.136] unit decrease	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q22.1		rs4986970-A	0.965917	4E-9		0.0673862	[0.045-0.09] unit decrease	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-15		0.0795439	[0.06-0.099] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	8E-11		0.0669093	[0.047-0.087] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966071	8E-9		0.0616522	[0.041-0.083] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-19		0.0925782	[0.073-0.113] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966086	2E-18		0.0882436	[0.068-0.108] unit decrease	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-20		0.101024	[0.08-0.122] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-22		0.0980976	[0.078-0.118] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-8		0.064083	[0.042-0.086] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-13		0.0758808	[0.056-0.096] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-16		0.0828058	[0.063-0.102] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-17		0.08649	[0.067-0.106] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966071	3E-10		0.0683276	[0.047-0.09] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-15		0.081851	[0.062-0.102] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-10		0.0678482	[0.047-0.088] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-19		0.0901529	[0.071-0.11] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-13		0.0787803	[0.058-0.1] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966086	5E-17		0.0953719	[0.073-0.118] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-23		0.114177	[0.092-0.137] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-13		0.0771066	[0.056-0.098] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	3E-20		0.0928984	[0.073-0.113] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	9E-20		0.0931934	[0.073-0.113] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-13		0.0821304	[0.06-0.104] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	2E-13		0.0772556	[0.057-0.098] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	1E-19		0.0911095	[0.071-0.111] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	4E-13		0.0733478	[0.054-0.093] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q22.1		rs4986970-A	0.966081	9E-13		0.0746053	[0.054-0.095] unit increase	NR [11722792] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q22.1		rs4986970-T	NR	2E-10		0.0405	[0.028-0.053] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs4986970-T	NR	1E-11		0.0453	[0.032-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs4986970-T	NR	3E-37		0.089	[0.075-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs4986970-T	NR	9E-38		0.0899	[0.076-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
1103	chr16	67976319	67976320	rs4986970	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	16q22.1		rs4986970-A	0.97	2E-17		0.2148	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1103	chr16	67976822	67976823	rs199717050	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	16q22.1	LCAT	rs199717050-?	NR	6E-10		0.717	unit decrease	Illumina [15144991] (imputed)	N
1103	chr16	67976850	67976851	rs35673026	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	16q22.1		rs35673026-?	NR	1E-21		0.87	[0.69-1.05] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	67976850	67976851	rs35673026	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	LCAT	rs35673026-?	NR	2E-16	(AA)	14.23961	[10.84-17.64] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	67976850	67976851	rs35673026	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	LCAT	rs35673026-?	NR	1E-6	(Hispanic/Latino)	10.06296	[6.03-14.1] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	67976850	67976851	rs35673026	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.1	LCAT	rs35673026-T	0.0042	1E-14		0.3485	[0.26-0.44] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1103	chr16	67976850	67976851	rs35673026	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	16q22.1	LCAT	rs35673026-?	0.0034	2E-10	(AA)	10.0	mg/dl increase	Illumina [247644]	N
1103	chr16	67976869	67976870	rs121908055	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	16q22.1		rs121908055-?	NR	5E-27		1.47718	[1.2-1.76] unit decrease	NR [9800000] (imputed)	N
1103	chr16	67976869	67976870	rs121908055	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	16q22.1		rs121908055-?	NR	3E-20		1.30849	[1.02-1.6] unit decrease	NR [9800000] (imputed)	N
1103	chr16	67977381	67977382	rs1109166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q22.1	LCAT	rs1109166-C	0.166871	1E-15		0.025394183	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1103	chr16	67977381	67977382	rs1109166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.1	LCAT	rs1109166-C	0.166882	2E-32		0.036905628	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1103	chr16	67977381	67977382	rs1109166	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q22.1	LCAT	rs1109166-T	0.87	3E-9	(Asian initial, BMI unadjusted)	0.071	[0.047-0.095] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
1103	chr16	67977381	67977382	rs1109166	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	16q22.1	LCAT	rs1109166-T	0.87	4E-10	(BMI unadjusted)	0.086	[0.059-0.113] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1103	chr16	67984803	67984804	rs116856853	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q22.1	NR	rs116856853-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1103	chr16	67985705	67985706	rs2292318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.1		rs2292318-C	0.878859	2E-10		0.0388421	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
1103	chr16	67985705	67985706	rs2292318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.1		rs2292318-C	0.878859	5E-11		0.0410289	[0.029-0.053] unit increase	NR [11722792] (imputed)	N
1103	chr16	67985705	67985706	rs2292318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q22.1		rs2292318-T	NR	1E-83		0.0603	[0.054-0.066] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1103	chr16	67985705	67985706	rs2292318	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q22.1	LCAT	rs2292318-T	0.141	3E-57	(Trans-ethnic initial)	0.0805	[0.071-0.09] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1103	chr16	67989522	67989523	rs7195605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q22.1	Intergenic	rs7195605-T	0.8157	1E-14	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr16	67991971	67991972	rs78818722	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q22.1	NR	rs78818722-T	0.0675309	2E-9		0.07993	[0.053-0.106] unit increase	Affymetrix [17914406] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.1		rs3785100-T	0.878705	5E-11		0.0414173	[0.029-0.054] unit decrease	NR [11722792] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q22.1		rs3785100-T	0.878762	4E-8		0.0348229	[0.022-0.047] unit increase	NR [11722792] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs3785100-T	NR	2E-6		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs3785100-T	NR	5E-44		0.07	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs3785100-T	0.868	9E-37	(EA)	0.071	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67997919	67997920	rs3785100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs3785100-T	0.85	4E-6	(Hispanic)	0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	67999215	67999215	rs11383451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	16q22.1		rs11383451-CA	0.13833	3E-22		0.065827	[0.053-0.079] unit increase	Illumina [13465896] (imputed)	N
1103	chr16	68004791	68004792	rs548291389	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	16q22.1	NR	rs548291389-G	0.000813701	1E-8		1.2597599	[0.82-1.69] mg/dl decrease	Illumina [24111857] (imputed)	N
1103	chr16	68007574	68007575	rs148753499	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q22.1	PSKH1	rs148753499-?	NR	8E-12		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1103	chr16	68007574	68007575	rs148753499	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	16q22.1	PSKH1	rs148753499-?	NR	3E-13		0.01479	[0.011-0.019] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1103	chr16	68013470	68013471	rs255049	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q22.1	SLC9A5, PLEKHG4, KCTD19, LRRC36, TPPP3, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, ENKD1, GFOD2, RANBP10, TSNAXIP1, CENPT, NUTF2, EDC4, PSKH1, CTRL, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DDX28, DUS2L, NFATC3, ESRP2, PLA2G15, SLC7A6, SLC7A6OS, PRMT7, SMPD3	rs255049-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68013470	68013471	rs255049	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs255049-?	NR	1E-7		0.6665949	[0.42-0.91] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	68013470	68013471	rs255049	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish founder individuals	NA	16q22.1	LCAT	rs255049-G	0.22	3E-8		0.05	[0.03-0.07] mmol/l increase	Illumina [329091]	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	9E-6		0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	5E-81				Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	4E-39	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	3E-23	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	2E-16	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	1E-10	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	5E-19	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	4E-24	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	3E-11	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	2E-99				Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.1	DPEP3, DPEP2	rs255056-C	NR	2E-50	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	7E-54		0.017	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	6E-8	(Hispanic)	0.022	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	5E-17	(Asian)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	3E-23	(EA)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	3E-14	(AA)	0.027	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	4E-6	(AA)	0.01885	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	4E-10	(EA)	0.01417	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	2E-35		0.01566	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68016184	68016185	rs255056	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.1	DPEP3, DPEP2	rs255056-C	NR	1E-17	(Asian)	0.0149	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1103	chr16	68017355	68017356	rs255054	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs255054-?	NR	3E-13		1.072857	[0.78-1.36] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	68017355	68017356	rs255054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs255054-A	NR	7E-6		0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	68017355	68017356	rs255054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs255054-A	NR	2E-40		0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	68017355	68017356	rs255054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.1	NR	rs255054-A	0.86	3E-34	(EA)	0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1103	chr16	68020491	68020492	rs255053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.1		rs255053-A	0.1913	7E-10		0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1103	chr16	68020491	68020492	rs255053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.1	Intergenic	rs255053-A	0.1913	3E-13	(MTAG)	0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1103	chr16	68024994	68024995	rs255052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs255052-A	NR	5E-11		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	68024994	68024995	rs255052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.1	NR	rs255052-A	NR	1E-13		0.0254	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	68024994	68024995	rs255052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs255052-A	NR	2E-68		0.0625	[0.055-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	68024994	68024995	rs255052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs255052-A	NR	4E-60		0.0586	[0.052-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr16	68024994	68024995	rs255052	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs255052-?	NR	3E-13		1.058079	[0.77-1.34] unit increase	Illumina [31978362] (imputed)	N
1103	chr16	68024994	68024995	rs255052	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	16q22.1	LCAT	rs255052-A	0.17	1E-7		0.74	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1104	chr16	68029738	68029739	rs56303487	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs56303487-C	0.825005	4E-8		0.0293882	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1104	chr16	68029738	68029739	rs56303487	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q22.1	DPEP2	rs56303487-?	NR	3E-19		0.06921	[0.054-0.084] unit increase novel	Illumina [6108953] (imputed)	N
1104	chr16	68034744	68034745	rs547039428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q22.1	DUS2	rs547039428-C	0.234243	7E-13		0.021024013	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1104	chr16	68036938	68036939	rs79577483	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	16q22.1		rs79577483-G	NR	1E-11		0.211743	[0.15-0.27] unit increase	NR [5054572] (imputed)	N
1104	chr16	68042013	68042014	rs149992277	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q22.1	NR	rs149992277-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1104	chr16	68046323	68046323	rs111644390	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16q22.1		rs111644390-TC	NR	1E-9		0.167402	[0.11-0.22] unit increase	NR [2787054] (imputed)	N
1104	chr16	68051472	68051476	rs138936754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q22.1		rs138936754-T	NR	6E-21		0.0344	[0.027-0.042] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1104	chr16	68054787	68054788	rs112595563	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.1	intergenic	rs112595563-A	0.7352	4E-9		0.0197	[0.013-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1104	chr16	68060473	68060474	rs74652527	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs74652527-T	NR	2E-12		0.0298	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1104	chr16	68060473	68060474	rs74652527	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs74652527-T	NR	2E-12		0.0298	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1104	chr16	68084062	68084063	rs116906005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	16q22.1		rs116906005-T	NR	8E-9		1.1202	[0.74-1.5] unit increase	Affymetrix, Illumina [25843170] (imputed)	N
1104	chr16	68084062	68084063	rs116906005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	16q22.1		rs116906005-T	0.019900331	8E-9		1.1202404	[0.74-1.5] unit increase	Illumina [13429875] (imputed)	N
1104	chr16	68099945	68099946	rs7200986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q22.1		rs7200986-A	NR	3E-13		0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1104	chr16	68100460	68100461	rs2285912	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	DUS2	rs2285912-T		9E-12		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1104	chr16	68136931	68136932	rs72790386	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q22.1	NFATC3	rs72790386-T	0.0338	2E-8		1.0622613		Affymetrix [11880941] (imputed)	N
1104	chr16	68138090	68138091	rs117784871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q22.1		rs117784871-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1104	chr16	68140638	68140639	rs4627335	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q22.1	NR	rs4627335-G	0.32791	4E-9		0.0422907	[0.028-0.057] unit increase	Affymetrix [17914406] (imputed)	N
1104	chr16	68153061	68153062	rs114763908	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q22.1	NR	rs114763908-?	NR	6E-6		3.293925	[1.87-4.72] unit increase	Illumina [31978362] (imputed)	N
1105	chr16	68165960	68165961	rs75914405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.1	NR	rs75914405-C	NR	6E-11		0.0462	[0.032-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1105	chr16	68165960	68165961	rs75914405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs75914405-C	NR	3E-21		0.0696	[0.055-0.084] unit increase	Affymetrix [9000000] (imputed)	N
1105	chr16	68165960	68165961	rs75914405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs75914405-C	NR	1E-16		0.061	[0.046-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1105	chr16	68166970	68166971	rs56230350	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q22.1	NFATC3	rs56230350-A	0.8731	3E-8		0.0257	[0.017-0.035] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1105	chr16	68187782	68187783	rs10719112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q22.1		rs10719112-C	NR	2E-9		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1105	chr16	68189339	68189340	rs8044995	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	16q22.1	NFATC3	rs8044995-G	0.836	6E-9		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1105	chr16	68189339	68189340	rs8044995	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q22.1	NR	rs8044995-A	NR	4E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
1105	chr16	68189339	68189340	rs8044995	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	16q22.1	ACD, C16orf86, CENPT, CTRL, DDX28, DPEP2, DPEP3, DUS2L, EDC4, ENKD1, ESRP2, GFOD2, LCAT, NFATC3, NRN1L, NUTF2, PARD6A, PLA2G15, PSKH1, PSMB10, RANBP10, SLC12A4, SLC7A6, SLC7A6OS, THAP11, TSNAXIP1	rs8044995-A	0.162	2E-8		1.081	[1.052-1.111]	Affymetrix, Illumina [9005918] (imputed)	N
1105	chr16	68202746	68202747	rs4359427	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q22.1	NFATC3	rs4359427-T	0.13	2E-15		7.92	z-score increase	Affymetrix [4311822] (imputed)	N
1105	chr16	68243485	68243486	rs6499163	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q22.1	NR	rs6499163-T	0.17	9E-10		0.0146	[0.0098-0.0194] unit decrease	NR [NR]	N
1105	chr16	68248606	68248607	rs1073632	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16q22.1	NR	rs1073632-A	0.0425	3E-10		0.0272	[0.019-0.036] unit decrease	NR [~ 27400000] (imputed)	N
1105	chr16	68252078	68252079	rs9928653	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	16q22.1	NR	rs9928653-?	NR	7E-8				Illumina [up to 5582932] (imputed)	N
1105	chr16	68254667	68254667	rs11372732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16q22.1		rs11372732-CA	NR	5E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1105	chr16	68265911	68265912	rs144444211	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs144444211-?	NR	3E-18	(AGRP)	2.70824	[2.1-3.32] unit increase	Illumina [11901634] (imputed)	N
1105	chr16	68270228	68270229	rs7184821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16q22.1	Intergenic	rs7184821-T	0.8267	4E-10		0.0187	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1105	chr16	68275129	68275130	rs117759106	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16q22.1	NR	rs117759106-G		1E-9		0.18	[0.12-0.24] unit increase	NR [NR]	N
1105	chr16	68275515	68275516	rs7197756	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q22.1	Intergenic	rs7197756-A	0.8268	9E-11	(MTAG)	0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1105	chr16	68285846	68285847	rs1975802	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	16q22.1	ACD, C16orf86, CENPT, CTRL, DDX28, DPEP2, DPEP3, DUS2, EDC4, ENKD1, ESRP2, GFOD2, LCAT, LOC100131303, MIR6773, NFATC3, NRN1L, NUTF2, PARD6A, PLA2G15, PSKH1, PSMB10, RANBP10, RLTPR, SLC7A6, SLC12A4, THAP11, TSNAXIP1	rs1975802-?	NR	4E-8		1.0718113	[1.05-1.10]	Illumina [8000000] (imputed)	N
1105	chr16	68286426	68286427	rs17688076	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	16q22.1	LYPLA3	rs17688076-A	NR	2E-23				NR [2501543] (imputed)	N
1105	chr16	68287543	68287544	rs12600062	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	16q22.1	NR	rs12600062-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1106	chr16	68294799	68294800	rs7672	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q22.1	PLA2G15	rs7672-C	0.233316	2E-12	(N6,N6,N6-trimethyllysine)	0.189	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1106	chr16	68294799	68294800	rs7672	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16q22.1	PLA2G15	rs7672-C	0.233316	2E-12	(N6,N6,N6-trimethyllysine)	0.189	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1106	chr16	68294799	68294800	rs7672	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q22.1	PLA2G15	rs7672-C	0.285863	8E-9		0.00900368	[0.0059-0.0121] unit increase	Affymetrix [12370749]	N
1106	chr16	68297227	68297228	rs9888986	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q22.1	NR	rs9888986-A	NR	4E-8		5.514	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1106	chr16	68297588	68297589	rs9888796	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q22.1	SLC7A6	rs9888796-T	0.186	3E-10		0.324	[0.1-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1106	chr16	68297588	68297589	rs9888796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q22.1		rs9888796-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1106	chr16	68297588	68297589	rs9888796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.1		rs9888796-T	0.2625	1E-12		0.0113	[0.0082-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1106	chr16	68297588	68297589	rs9888796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.1	Intergenic	rs9888796-T	0.2625	2E-15	(MTAG)	0.0119	[0.009-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1106	chr16	68297588	68297589	rs9888796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q22.1	Intergenic	rs9888796-T	0.2596	1E-11	(MTAG)	0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	16q22.1		rs8056893-C	0.267002	6E-9		0.0269592	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q22.1	NFATC3	rs8056893-C	0.1976	2E-10		6.375	NR z score decrease	Illumina [26237160] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	16q22.1	SLC7A6	rs8056893-A	0.72	1E-7	(EA)	0.0047	[0.0029-0.0065] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	16q22.1	intergenic	rs8056893-?	NR	2E-8	(Lysine)			Illumina [~ 2500000] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	16q22.1	SLC7A6	rs8056893-A	0.73	3E-39	(lysine/glutaroyl carnitine)	0.044	[0.038-0.05] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1106	chr16	68304391	68304392	rs8056893	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q22.1	SLC7A6	rs8056893-A	0.73	2E-30	(glutaroyl carnitine)	0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1106	chr16	68312863	68312864	rs9925773	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q22.1	SLC7A6	rs9925773-A	0.21283	2E-11	(glutarylcarnitine (C5-DC))	0.181	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
1106	chr16	68312863	68312864	rs9925773	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q22.1	SLC7A6	rs9925773-A	0.21283	1E-19	(lysine)	0.25	[0.2-0.3] unit decrease	Illumina [13039987] (imputed)	N
1106	chr16	68312863	68312864	rs9925773	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q22.1	SLC7A6	rs9925773-A	0.2853	5E-7		0.0384	[0.024-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1106	chr16	68317635	68317636	rs3961283	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q22.1	SLC7A6	rs3961283-G	0.213782	2E-16	(gamma-glutamyl-alpha-lysine)	0.228	[0.17-0.28] unit decrease	Illumina [13039987] (imputed)	N
1106	chr16	68323114	68323115	rs7185391	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q22.1	SLC7A6	rs7185391-T	0.2735	2E-14		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1106	chr16	68323114	68323115	rs7185391	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q22.1	SLC7A6	rs7185391-T	0.2886	1E-11		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1106	chr16	68323653	68323654	rs55757091	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q22.1	SLC7A6	rs55757091-A	NR	5E-7	(EA)	1.0747	[1.05-1.1]	Illumina [6627481] (imputed)	N
1106	chr16	68323653	68323654	rs55757091	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	16q22.1	SLC7A6	rs55757091-A	NR	3E-7		1.07	[1.04-1.1]	Illumina [6627481] (imputed)	N
1106	chr16	68323653	68323654	rs55757091	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	16q22.1	intergenic	rs55757091-A	NR	2E-7		1.071	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1106	chr16	68326199	68326200	rs6499165	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	16q22.1	PRMT7, SLC7A6, SLC7A6OS	rs6499165-?	NR	6E-11	(glutaroylcarnitine)	0.03404	[NR] unit increase	Affymetrix [655658]	N
1106	chr16	68326199	68326200	rs6499165	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	16q22.1	SLC7A6	rs6499165-A	0.266	1E-18	(glutaroyl carnitine/lysine + 3 other traits)	0.11	[NR] unit increase	Affymetrix, Illumina [534665]	N
1106	chr16	68331889	68331890	rs2863979	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q22.1	SLC7A6	rs2863979-A	0.72	1E-17	(lysine)	0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1106	chr16	68335391	68335392	rs11350	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.1	SLC7A6OS, SMPD3	rs11350-C		1E-10		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1106	chr16	68337947	68337948	rs11548855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.1	NR	rs11548855-C	NR	1E-10		0.0306	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1106	chr16	68344362	68344363	rs8063446	31579629	Fiorica PN	2019-09-26	PeerJ	Transcriptome association studies of neuropsychiatric traits in African Americans implicate PRMT7 in schizophrenia.	Schizophrenia	969 African American cases, 1,287 African American controls	NA	16q22.1	PRMT7, SLC7A6OS	rs8063446-?	NR	3E-6				Affymetrix [12780487] (imputed)	N
1106	chr16	68363180	68363181	rs1111571	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		16q22.1	SLC7A6	rs1111571-A	0.71	6E-9		0.0061	[0.0039-0.0083] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1106	chr16	68369931	68369932	rs11647672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q22.1		rs11647672-G	NR	3E-17		0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1106	chr16	68372771	68372772	rs12925938	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q22.1	NR	rs12925938-T	0.03484	1E-8	(PSMB5)	0.02838	NR unit increase	Illumina [1671387] (imputed)	N
1106	chr16	68374433	68374434	rs3785119	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q22.1	PRMT7	rs3785119-T	0.7028	4E-7		0.0355	[0.022-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	16q22.1	PRMT7	rs2307022-A	NR	8E-9		0.0189623	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q22.1	NR	rs2307022-G	0.667868	7E-11		0.0457209	[0.032-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q22.1	NR	rs2307022-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs2307022-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.1		rs2307022-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q22.1	NA	rs2307022-A	0.3278	8E-15		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16q22.1	NA	rs2307022-A	0.3278	8E-15		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q22.1	PRMT7	rs2307022-G	0.65	3E-8		0.016	[0.01-0.022] unit decrease	Illumina [6108953] (imputed)	N
1106	chr16	68381977	68381978	rs2307022	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q22.1	PRMT7	rs2307022-A	0.338	1E-6	(EA)	0.016	[0.0095-0.0225] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1106	chr16	68381977	68381978	rs2307022	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q22.1	PRMT7	rs2307022-A	0.334	4E-7		0.016	[0.0098-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1106	chr16	68383046	68383047	rs7197653	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	16q22.1	PRMT7	rs7197653-C	0.15	2E-6		0.01	[0.003-0.007] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1106	chr16	68383222	68383224	rs147268324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs147268324-C	NR	1E-22		0.0426	[0.034-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1106	chr16	68383222	68383224	rs147268324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs147268324-C	NR	1E-20		0.0406	[0.032-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1106	chr16	68390696	68390697	rs61733486	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q22.1	NR	rs61733486-C	0.941907	6E-10		0.0109627	[0.0074-0.0145] unit increase	Affymetrix [16582909] (imputed)	N
1106	chr16	68390696	68390697	rs61733486	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q22.1	NR	rs61733486-C	0.941907	2E-9		0.011648	[0.0077-0.0156] unit increase	Affymetrix [16582965] (imputed)	N
1106	chr16	68395370	68395371	rs117968336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q22.1		rs117968336-A	0.139995	8E-16		0.0255987	[0.019-0.032] unit increase	Illumina [13479295] (imputed)	N
1106	chr16	68395370	68395371	rs117968336	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q22.1	SMPD3	rs117968336-?	NR	1E-18		0.039388817	[0.031-0.048] unit increase	Illumina [27896057] (imputed)	N
1106	chr16	68396118	68396119	rs1110572	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		16q22.1	PRMT7, SMPD3	rs1110572-A	NR	3E-12		0.01768	[0.011-0.024] nmol/l decrease	NR [19000000] (imputed)	N
1106	chr16	68398874	68398875	rs141322661	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q22.1	SMPD3	rs141322661-G	0.01	4E-9			[NR]	Affymetrix [9886854] (imputed)	N
1106	chr16	68398874	68398875	rs141322661	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q22.1	SMPD3	rs141322661-G	0.01	1E-6		0.77	[0.69-0.86]	Affymetrix [9886854] (imputed)	N
1106	chr16	68398874	68398875	rs141322661	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q22.1	SMPD3	rs141322661-G	0.01	1E-8			[NR]	Affymetrix [9886854] (imputed)	N
1106	chr16	68398874	68398875	rs141322661	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	16q22.1	SMPD3	rs141322661-G	0.01	2E-6		0.77	[0.69-0.86]	Affymetrix [9886854] (imputed)	N
1106	chr16	68398874	68398875	rs141322661	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	16q22.1	SMPD3	rs141322661-G	0.01	6E-7		0.72	[0.63-0.82]	Affymetrix [9886854] (imputed)	N
1106	chr16	68398923	68398924	rs1868158	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	16q22.1	SMPD3, PRMT7	rs1868158-T	0.591752	8E-8		0.016544	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1106	chr16	68398923	68398924	rs1868158	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q22.1	SMPD3, PRMT7	rs1868158-T	0.587322	7E-6		0.011718	[0.0066-0.0168] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1106	chr16	68400424	68400425	rs141803457	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q22.1	Intergenic	rs141803457-?		3E-6		1.13	[1.07-1.19]	Illumina [7645193] (imputed)	N
1106	chr16	68400424	68400425	rs141803457	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q22.1	Intergenic	rs141803457-?		1E-6		3.04	[1.94-4.77]	Illumina [7645193] (imputed)	N
1106	chr16	68408118	68408119	rs1110570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q22.1		rs1110570-C	NR	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1106	chr16	68409162	68409163	rs79978301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs79978301-G	NR	3E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1106	chr16	68409162	68409163	rs79978301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs79978301-G	NR	3E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1106	chr16	68418791	68418792	rs11861362	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16q22.1	SMPD3	rs11861362-?	NR	6E-11		0.015396307	[0.011-0.02] unit increase	NR [7306098]	N
1107	chr16	68421600	68421601	rs55847153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs55847153-T	NR	5E-16		0.0609	[0.046-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1107	chr16	68421600	68421601	rs55847153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs55847153-T	NR	5E-14		0.0567	[0.042-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1107	chr16	68421667	68421668	rs11646700	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q22.1	SMPD3, PRMT7	rs11646700-G	0.494559	1E-8		0.014661	[0.0096-0.0197] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1107	chr16	68421775	68421776	rs8055813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q22.1		rs8055813-G	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1107	chr16	68428088	68428089	rs8051517	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.1	SMPD3	rs8051517-C	0.06375502	7E-11	(EA, Agouti-related protein)	0.5667	[0.4-0.74] unit increase	Affymetrix [509946]	N
1107	chr16	68428843	68428844	rs34006916	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q22.1	NR	rs34006916-G	0.945413	7E-12		0.0180982	[0.013-0.023] unit increase	Affymetrix [16582621] (imputed)	N
1107	chr16	68428843	68428844	rs34006916	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q22.1	NR	rs34006916-G	0.945413	8E-10		0.0170713	[0.012-0.022] unit increase	Affymetrix [16582614] (imputed)	N
1107	chr16	68430305	68430306	rs181745297	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs181745297-?	NR	6E-18	(AGRP)	2.75994	[2.13-3.39] unit increase	Illumina [11901634] (imputed)	N
1107	chr16	68433044	68433045	rs1364344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs1364344-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1107	chr16	68452952	68452953	rs11648252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.1		rs11648252-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1107	chr16	68531335	68531336	rs137866923	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q22.1	Intergenic	rs137866923-?		8E-7		1.15	[1.09-1.22]	Illumina [7645193] (imputed)	N
1107	chr16	68531335	68531336	rs137866923	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	16q22.1	Intergenic	rs137866923-?		3E-7		3.82	[2.29-6.36]	Illumina [7645193] (imputed)	N
1108	chr16	68551276	68551277	rs8050260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16q22.1	intergenic	rs8050260-A	0.2093	2E-9		0.02726745	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1108	chr16	68554754	68554755	rs28410471	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q22.1	ZFP90	rs28410471-A	0.181	3E-8		1.128	[1.08-1.17]	Illumina [11270530] (imputed)	N
1108	chr16	68555037	68555039	rs142674134	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs142674134-?	NR	5E-10	(AGRP)	1.67397	[1.15-2.2] unit increase	Illumina [11901634] (imputed)	N
1108	chr16	68560184	68560185	rs698718	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	16q22.1	intergenic	rs698718-A	0.225108	3E-11		0.834304	[0.6-1.07] unit increase	NR [7263501] (imputed)	N
1108	chr16	68569439	68569440	rs1749792	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q22.1	ZFP90	rs1749792-?	NR	4E-11		1.14	[1.10-1.19]	Illumina [at least 5000000] (imputed)	N
1108	chr16	68586503	68586504	rs12149608	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16q22.1	NR	rs12149608-?	NR	2E-8	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1108	chr16	68591229	68591230	rs1728785	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16q22.1	ZFP90, CDH3	rs1728785-?		4E-8				Illumina [9578670] (imputed)	N
1108	chr16	68591229	68591230	rs1728785	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	16q22.1	NR	rs1728785-C	0.78	5E-6	(EA)	1.0728852		Affymetrix, Illumina [~ 9000000] (imputed)	N
1108	chr16	68591229	68591230	rs1728785	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	16q22.1	ZFP90	rs1728785-C	0.767	4E-8		1.075	[1.031-1.121]	Affymetrix, Illumina [1230000] (imputed)	N
1108	chr16	68591229	68591230	rs1728785	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	16q22.1	CDH1	rs1728785-G	0.76	3E-8		1.17	[1.07-1.27]	Affymetrix [NR]	N
1108	chr16	68600350	68600351	rs17689437	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	16q22.1	ZFP90	rs17689437-?	NR	6E-6				Illumina [990115]	N
1108	chr16	68600350	68600351	rs17689437	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	16q22.1	ZFP90	rs17689437-?	0.13	1E-6	(risperidone)			Affymetrix [492900]	N
1108	chr16	68603797	68603798	rs1170426	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	16q22.1	ZFP90	rs1170426-C	0.235	2E-8		1.12	[1.08-1.17]	NR [6344733] (imputed)	N
1108	chr16	68603797	68603798	rs1170426	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	16q22.1	ZFP90	rs1170426-C	0.176	4E-8	(Chinese)	1.2	[1.12-1.28]	NR [6344733] (imputed)	N
1108	chr16	68607485	68607486	rs1170436	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q22.1	ZFP90	rs1170436-?	NR	8E-7	(AA)	1.31	[1.18-1.46]	Illumina [at least 5000000] (imputed)	N
1108	chr16	68607485	68607486	rs1170436	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	16q22.1	ZFP901	rs1170436-?	NR	9E-7		1.17	[1.10-1.25]	Illumina [at least 5000000] (imputed)	N
1108	chr16	68608510	68608511	rs1170439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q22.1		rs1170439-C	NR	9E-19		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1108	chr16	68608510	68608511	rs1170439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q22.1	RP11-615I2.1, ZFP90	rs1170439-C	0.77913	3E-18		0.023427002	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr16	68608510	68608511	rs1170439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q22.1	RP11-615I2.1, ZFP90	rs1170439-C	0.779149	6E-18		0.02335192	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr16	68608510	68608511	rs1170439	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs1170439-C	0.783079	9E-21				Affymetrix, Illumina [19872809] (imputed)	N
1108	chr16	68608510	68608511	rs1170439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q22.1		rs1170439-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1108	chr16	68655234	68655234	rs150095649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q22.1		rs150095649-CAAACA	0.698537	1E-17		0.02186246	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr16	68655234	68655234	rs150095649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q22.1	NR	rs150095649-I	0.698116	5E-11		0.015129	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1108	chr16	68659408	68659409	rs145249240	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs145249240-?	NR	5E-14	(AGRP)	2.25318	[1.67-2.84] unit increase	Illumina [11901634] (imputed)	N
1108	chr16	68660564	68660565	rs6499186	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	16q22.1	intergenic	rs6499186-C	0.231602	7E-10		0.783774	[0.55-1.02] unit increase	NR [7263501] (imputed)	N
1108	chr16	68672345	68672346	rs8046299	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	16q22.1	CDH1	rs8046299-G	0.256976	6E-15				Affymetrix, Illumina [NR] (imputed)	N
1108	chr16	68672345	68672346	rs8046299	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	16q22.1	CDH3	rs8046299-G	0.256976	1E-8				Affymetrix, Illumina [NR] (imputed)	N
1108	chr16	68674787	68674788	rs6499188	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	16q22.1	ZFP90	rs6499188-A	0.75	4E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1108	chr16	68680902	68680902	rs3049697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q22.1	CDH3	rs3049697-ACT	0.775126	3E-9		0.016358979	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68685904	68685905	rs1886700	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16q22.1	CDH3	rs1886700-A	0.14	1E-8		1.1		Illumina [161311]	N
1109	chr16	68689418	68689419	rs7196626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q22.1	NR	rs7196626-A	NR	3E-17		0.0241	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1109	chr16	68720098	68720099	rs74653085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs74653085-C	0.955536	4E-9		0.0565615	[0.038-0.075] unit decrease	NR [11722792] (imputed)	N
1109	chr16	68720098	68720099	rs74653085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs74653085-C	0.955536	8E-10		0.0593722	[0.04-0.078] unit increase	NR [11722792] (imputed)	N
1109	chr16	68720098	68720099	rs74653085	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.1		rs74653085-C	0.955536	3E-10		0.0603002	[0.042-0.079] unit increase	NR [11722792] (imputed)	N
1109	chr16	68733645	68733646	rs3118233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q22.1		rs3118233-C	NR	1E-26		0.0251	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1109	chr16	68733645	68733646	rs3118233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	16q22.1	CDH3	rs3118233-C	0.2807	3E-20		0.0363763	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1109	chr16	68742544	68742545	rs147333341	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	16q22.1	NR	rs147333341-C	NR	1E-16		0.0361636	[0.027-0.045] unit increase	Affymetrix [16832071] (imputed)	N
1109	chr16	68743938	68743939	rs9924886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.1	CDH3	rs9924886-C	0.267306	1E-9		0.015599517	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1109	chr16	68743938	68743939	rs9924886	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	16q22.1	CDH1	rs9924886-A	0.7321	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1109	chr16	68750189	68750190	rs4783565	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	16q22.1	CDH3	rs4783565-A	0.2941	2E-7		0.0092	[0.0057-0.0127] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1109	chr16	68757768	68757769	rs192253604	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	16q22.1	intergenic	rs192253604-A	0.096	8E-7		0.175	[0.11-0.24] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1109	chr16	68763960	68763961	rs28871723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	16q22.1		rs28871723-A	NR	2E-8		0.0591	[0.039-0.08] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1109	chr16	68784602	68784603	rs9937664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs9937664-C	0.255449	4E-13				Affymetrix, Illumina [21126107] (imputed)	N
1109	chr16	68791230	68791231	rs9646283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	16q22.1		rs9646283-G	NR	4E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1109	chr16	68791230	68791231	rs9646283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q22.1	CDH1	rs9646283-G	0.283358	2E-10		0.0164866	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68791305	68791306	rs9646284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs9646284-G	0.266134	1E-41				Affymetrix, Illumina [20825802] (imputed)	N
1109	chr16	68793682	68793683	rs76816469	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		16q22.1	CDH1	rs76816469-T	0.101	1E-6	(liability model)	0.12	[0.061-0.179] unit decrease	NR [19725427] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16q22.1		rs35158985-A	0.693	4E-13		0.09	[0.06-0.11] % increase	Affymetrix [NR] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs35158985-A	0.685249	2E-66				Affymetrix, Illumina [22063850] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16q22.1	NR	rs35158985-A	0.690281	2E-69		0.03591	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16q22.1	NR	rs35158985-G	0.308157	5E-41		0.027977	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q22.1		rs35158985-?	NR	7E-57				NR [~ 8900000] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.1		rs35158985-?	NR	1E-38				NR [~ 8900000] (imputed)	N
1109	chr16	68796745	68796746	rs35158985	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	16q22.1	CDH1	rs35158985-G	0.3	3E-7		0.095	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1109	chr16	68800034	68800035	rs4783675	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.1	NR	rs4783675-C	0.295	5E-8		0.00660262	[0.0042-0.009] unit decrease	NR [9732723] (imputed)	N
1109	chr16	68800641	68800641	rs11426768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q22.1	CDH1	rs11426768-CT	0.588078	2E-21		0.0176975	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1109	chr16	68800641	68800641	rs11426768	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q22.1	CDH1	rs11426768-CT	0.5876	2E-10		0.02282639	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1109	chr16	68802037	68802038	rs28608872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q22.1	CDH1	rs28608872-G	0.290034	3E-28		0.026733719	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68802067	68802068	rs8055912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q22.1	CDH1	rs8055912-T	0.289227	1E-45		0.035246693	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68802067	68802068	rs8055912	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q22.1	CDH1	rs8055912-T	0.289227	3E-38		0.032170575	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68802071	68802072	rs8056206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q22.1	CDH1	rs8056206-C	0.28931	2E-49		0.036425024	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1109	chr16	68802095	68802096	rs8056338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q22.1	CDH1	rs8056338-A	0.289277	2E-41		0.033350043	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68802095	68802096	rs8056338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q22.1	CDH1	rs8056338-A	0.289277	6E-36		0.031010067	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1109	chr16	68803843	68803844	rs28628339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q22.1		rs28628339-G	NR	8E-20		0.023	[0.018-0.028] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1109	chr16	68806244	68806245	rs147924298	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	16q22.1	NR	rs147924298-?	NR	6E-17	(AGRP)	2.7171	[2.08-3.35] unit increase	Illumina [11901634] (imputed)	N
1109	chr16	68812300	68812301	rs9939049	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	16q22.1	NR	rs9939049-A	NR	2E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
1110	chr16	68818389	68818390	rs7198799	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16q22.1	CDH1	rs7198799-T	0.2868	5E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1110	chr16	68819642	68819642	rs34117943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q22.1	CDH1	rs34117943-CT	0.2901	2E-11		0.02634223	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr16	68820945	68820946	rs9929218	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	16q22.1	NR	rs9929218-G	0.706	7E-6	(EA)	1.0638298	[1.03-1.09]	Affymetrix, Illumina [12931465] (imputed)	N
1110	chr16	68820945	68820946	rs9929218	19011631	Houlston RS	2008-11-16	Nat Genet	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	16q22.1	CDH1	rs9929218-G	0.29	1E-8		1.1	[1.06-1.12]	Illumina [up to 548586]	N
1110	chr16	68822970	68822971	rs4420522	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q22.1	CDH1	rs4420522-G	0.3102	8E-14		1.0800303	NR	Affymetrix, Illumina [NR] (imputed)	N
1110	chr16	68830667	68830667	rs71382075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q22.1	CDH1	rs71382075-GA	0.3078	8E-18		0.03360311	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr16	68830667	68830667	rs71382075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q22.1	CDH1	rs71382075-GA	0.3078	2E-14		0.02998846	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr16	68830667	68830667	rs71382075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16q22.1	CDH1	rs71382075-GA	0.3078	6E-17		0.03264661	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr16	68830667	68830667	rs71382075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q22.1	CDH1	rs71382075-GA	0.3078	4E-15		0.03067081	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1110	chr16	68831981	68831982	rs71148950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16q22.1	CDH1	rs71148950-C	0.303903	1E-12		0.017418463	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1110	chr16	68839262	68839263	rs10431923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q22.1	NR	rs10431923-T	NR	2E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1110	chr16	68845210	68845211	rs8059669	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		CDH1	rs8059669-C	0.14	1E-6				Illumina [1679420] (imputed)	N
1110	chr16	68853670	68853671	rs4783689	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	16q22.1	NR	rs4783689-G		7E-6				Illumina [458525]	N
1110	chr16	68863313	68863314	rs2276329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs2276329-C	NR	2E-11		0.0303	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1110	chr16	68863313	68863314	rs2276329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs2276329-C	NR	4E-11		0.0299	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1110	chr16	68878720	68878721	rs74025321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs74025321-A	0.925401	1E-8		0.040342	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
1110	chr16	68878720	68878721	rs74025321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs74025321-A	0.925401	3E-10		0.0444042	[0.031-0.058] unit increase	NR [11722792] (imputed)	N
1110	chr16	68878720	68878721	rs74025321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q22.1		rs74025321-A	0.925401	3E-9		0.0423012	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1110	chr16	68881774	68881775	rs138539707	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Agouti-related protein levels	21,758 European ancestry individuals	9,173 individuals	16q22.1		rs138539707-T	0.023	7E-13		0.2217	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1110	chr16	68893952	68893953	rs4597312	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q22.1	NR	rs4597312-?	NR	1E-6				Affymetrix [NR]	N
1110	chr16	68942589	68942590	rs79390277	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	16q22.1	TANGO6	rs79390277-C	0.05	7E-7		1.28	[1.16-1.42]	Affymetrix, Illumina [7891602] (imputed)	N
1111	chr16	68950654	68950654	rs557350916	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs557350916-?	NR	9E-18		0.143541	[0.11-0.18] unit increase	Affymetrix [20259828] (imputed)	N
1111	chr16	68965539	68965540	rs80095869	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	16q22.1	NR	rs80095869-T	0.970427	1E-8		0.985	[0.980, 0.990]	Affymetrix [39302896] (imputed)	N
1111	chr16	69000587	69000588	rs193968	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	16q22.1	NR	rs193968-G		3E-6				Illumina [458525]	N
1111	chr16	69049292	69049293	rs77631377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs77631377-C	0.958036	4E-15		0.0820662	[0.062-0.103] unit decrease	NR [11722792] (imputed)	N
1111	chr16	69049292	69049293	rs77631377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.1		rs77631377-C	0.958036	8E-12		0.0680073	[0.049-0.087] unit increase	NR [11722792] (imputed)	N
1111	chr16	69049292	69049293	rs77631377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q22.1		rs77631377-C	0.958036	4E-9		0.0543867	[0.036-0.073] unit increase	NR [11722792] (imputed)	N
1111	chr16	69049292	69049293	rs77631377	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q22.1	TANGO6	rs77631377-C	0.958168	5E-14		0.0360604	[0.027-0.045] unit increase	Affymetrix [NR] (imputed)	N
1111	chr16	69049292	69049293	rs77631377	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q22.1	TANGO6	rs77631377-C	0.958133	5E-14		0.0373628	[0.028-0.047] unit increase	Affymetrix [NR] (imputed)	N
1111	chr16	69053197	69053198	rs9933071	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	RP11-215A19.2	rs9933071-?		2E-8				NR [7428630] (imputed)	N
1112	chr16	69120353	69120354	rs6499216	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 81)	19,670 European ancestry individuals	NA	16q22.1		rs6499216-?	NR	1E-15				NR [9705931] (imputed)	N
1112	chr16	69122042	69122043	rs74615093	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs74615093-?	NR	6E-11		0.0246351	[0.017-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1112	chr16	69122042	69122043	rs74615093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.1		rs74615093-A	0.0772	4E-8		0.0145	[0.0094-0.0196] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1112	chr16	69122042	69122043	rs74615093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.1	Intergenic	rs74615093-A	0.0772	2E-8	(MTAG)	0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1112	chr16	69128052	69128053	rs9926320	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	TANGO6, HAS3, CHTF8, CIRH1A, SNTB2, RP11-343C2.11, VPS4A, COG8, TERF2	rs9926320-?		5E-11				NR [7428630] (imputed)	N
1112	chr16	69131280	69131281	rs7185555	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16q22.1	NR	rs7185555-C	0.153	2E-10		0.011718	[0.0081-0.0153] unit decrease	NR [~ 9732723] (imputed)	N
1112	chr16	69131280	69131281	rs7185555	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16q22.1	NR	rs7185555-C	0.153	4E-8		0.011100514	[0.0071-0.0151] unit decrease	NR [~ 10000000] (imputed)	N
1112	chr16	69131280	69131281	rs7185555	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16q22.1	HAS3	rs7185555-C	0.1525	9E-13		0.1537	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1112	chr16	69133965	69133966	rs16958638	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q22.1		rs16958638-G	0.11	5E-15		7.83	z score increase	Affymetrix [9061022] (imputed)	N
1112	chr16	69133965	69133966	rs16958638	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q22.1	NR	rs16958638-G	0.1032	1E-17				NR [9056863] (imputed)	N
1112	chr16	69135048	69135049	rs8047014	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	16q22.1	HAS3	rs8047014-?	NR	4E-6	(binary)			Perlegen [429981]	N
1112	chr16	69140687	69140688	rs3759981	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q22.1	NR	rs3759981-T	0.0593	2E-11				NR [9056863] (imputed)	N
1112	chr16	69141137	69141138	rs3759983	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	16q22.1		rs3759983-T	0.28489	4E-6		0.034587	[0.02-0.049] unit increase	Affymetrix [15580782] (imputed)	N
1112	chr16	69169926	69169927	rs9940899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs9940899-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1112	chr16	69170567	69170568	rs3815821	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q22.1		rs3815821-A	0.05	4E-16		8.14	z score increase	Affymetrix [9061022] (imputed)	N
1112	chr16	69187317	69187318	rs5011579	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs5011579-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1112	chr16	69187317	69187318	rs5011579	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q22.1	NA	rs5011579-C	0.2828	2E-10		0.0135	[0.0094-0.0176] unit decrease	NR [~ 27400000] (imputed)	N
1112	chr16	69193318	69193319	rs117268208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.1		rs117268208-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1113	chr16	69224614	69224615	rs1424114	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	16q22.1	SNTB2	rs1424114-T	0.353	4E-8		0.981067	[NR]	Illumina [12493444] (imputed)	N
1113	chr16	69285509	69285510	rs192042440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs192042440-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1113	chr16	69285509	69285510	rs192042440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.1		rs192042440-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1113	chr16	69315917	69315918	rs113338984	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	16q22.1	SNTB2, CIRH1A, VPS4A, PDF, COG8, NIP7, TMED6, TERF2	rs113338984-T	0.06	7E-7		0.43	[0.25-0.61] unit increase	Illumina [7797256] (imputed)	N
1114	chr16	69354962	69354963	rs1127231	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	16q22.1		rs1127231-G	0.3265	1E-5		0.032081	[0.018-0.046] unit increase	Affymetrix [15580782] (imputed)	N
1114	chr16	69357405	69357406	rs16958751	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.1	VPS4A	rs16958751-A	0.0376	3E-10		0.0508	[0.035-0.067] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1114	chr16	69376268	69376269	rs11540992	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	16q22.1		rs11540992-G	0.956514	4E-8		0.05605	[0.036-0.076] unit increase	NR [11722792] (imputed)	N
1114	chr16	69376685	69376686	rs1048818	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q22.1	NA	rs1048818-T		3E-8		0.0108751	[0.007-0.0147] unit decrease	Illumina [13288253] (imputed)	N
1114	chr16	69378444	69378445	rs7186635	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q22.1	RP11-343C2.9	rs7186635-A	0.67566	4E-8		0.0117528	[0.0076-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	16q22.1		rs76116020-A	0.956249	4E-8		0.0545806	[0.035-0.074] unit increase	NR [11722792] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	16q22.1		rs76116020-A	0.956237	2E-9		0.0591283	[0.04-0.078] unit increase	NR [11722792] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	16q22.1		rs76116020-A	0.956237	8E-9		0.0570097	[0.038-0.076] unit increase	NR [11722792] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs76116020-A	0.956249	2E-15		0.0804703	[0.061-0.1] unit increase	NR [11722792] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs76116020-G	NR	2E-9		0.0355	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q22.1	NR	rs76116020-G	NR	4E-10		0.0383	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q22.1	NR	rs76116020-G	NR	1E-9		0.0376	[0.025-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1114	chr16	69385640	69385641	rs76116020	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	16q22.1	NR	rs76116020-G	NR	2E-17		0.042389262	[0.033-0.052] unit decrease	Illumina [242289]	N
1114	chr16	69385640	69385641	rs76116020	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	16q22.1	NR	rs76116020-G	0.038	1E-8		0.043	unit decrease	Illumina [242289]	N
1114	chr16	69403011	69403012	rs528301822	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	16q22.1	TERF2	rs528301822-T		1E-12		0.0067	[0.0049-0.0085] unit increase	Affymetrix [13304133] (imputed)	N
1114	chr16	69406985	69406986	rs3785074	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	16q22.1	TERF2	rs3785074-G	0.26	5E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1114	chr16	69429913	69429914	rs79989256	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	TERF2	rs79989256-C	0.9528	3E-9		0.3756	[0.25-0.5] mmHg decrease	Affymetrix [NR] (imputed)	N
1114	chr16	69431162	69431163	rs75086474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q22.1		rs75086474-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1114	chr16	69445947	69445948	rs78733883	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.1	CYB5B	rs78733883-G	0.949838	5E-11		0.0279952	[0.02-0.036] unit decrease	NR [13737936] (imputed)	N
1114	chr16	69445947	69445948	rs78733883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.1		rs78733883-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1115	chr16	69497202	69497203	rs12149862	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	16q22.1	CYB5B	rs12149862-?	NR	4E-9	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1115	chr16	69538238	69538239	rs141904578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q22.1		rs141904578-T	NR	2E-8		0.0342	[0.022-0.046] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1115	chr16	69542375	69542376	rs744972	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	16q22.1	CYB5B, NFAT5	rs744972-C	0.256	9E-6	(Protein (control))			Affymetrix [590000]	N
1115	chr16	69549748	69549749	rs11866219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	16q22.1		rs11866219-C	NR	2E-8		0.0478	[0.031-0.064] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1115	chr16	69549748	69549749	rs11866219	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	16q22.1	NR	rs11866219-A	0.439364	2E-9		0.042997975	[0.029-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1115	chr16	69549748	69549749	rs11866219	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q22.1	NR	rs11866219-?	NR	6E-10		0.13432	[0.092-0.177] unit decrease	Affymetrix [7794483] (imputed)	N
1115	chr16	69549748	69549749	rs11866219	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q22.1	NR	rs11866219-?	NR	2E-7	(male)	0.13813	[0.086-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1115	chr16	69549748	69549749	rs11866219	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q22.1	NA	rs11866219-A	0.4223	5E-28		0.019	[0.016-0.022] unit increase	NR [~ 27400000] (imputed)	N
1115	chr16	69550485	69550486	rs145206681	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	16q22.1	NFAT5	rs145206681-T	0.06	3E-7		0.056	[0.034-0.078] unit increase	Affymetrix [NR] (imputed)	N
1115	chr16	69551466	69551467	rs8049669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	16q22.1		rs8049669-A	0.43	4E-16		0.016	mmol/L increase	NR [NR] (imputed)	N
1115	chr16	69551466	69551467	rs8049669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	16q22.1		rs8049669-A	0.43	9E-8		0.01	nmol/L decrease	NR [NR] (imputed)	N
1115	chr16	69551466	69551467	rs8049669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q22.1		rs8049669-A	0.43	3E-19				NR [NR] (imputed)	N
1115	chr16	69551466	69551467	rs8049669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	16q22.1		rs8049669-A	0.43	1E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
1115	chr16	69551466	69551467	rs8049669	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q22.1		rs8049669-A	0.43	7E-26		0.016	% increase	NR [NR] (imputed)	N
1115	chr16	69552214	69552215	rs12924872	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			NFAT5	rs12924872-T	0.4615	1E-10		0.0531836	[0.037-0.069] unit decrease	Affymetrix [8165723] (imputed)	N
1115	chr16	69552214	69552215	rs12924872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA		NR	rs12924872-T	0.463	4E-8		0.013411901	[0.0086-0.0182] unit decrease	NR [~ 10000000] (imputed)	N
1115	chr16	69552784	69552785	rs4783581	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q22.1	NR	rs4783581-C	0.77	5E-36		0.0276	[0.023-0.032] unit decrease	NR [NR]	N
1115	chr16	69552784	69552785	rs4783581	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16q22.1	intergenic	rs4783581-G	0.227716	7E-8		0.202148	[0.13-0.28] unit increase	Affymetrix [9463307] (imputed)	N
1115	chr16	69552784	69552785	rs4783581	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	16q22.1	intergenic	rs4783581-G	0.227716	2E-6		0.0119389	[0.007-0.0169] unit increase	Affymetrix [9463307] (imputed)	N
1115	chr16	69552784	69552785	rs4783581	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	16q22.1	intergenic	rs4783581-G	0.227716	1E-8		0.328725	[0.22-0.44] unit increase	Affymetrix [9463307] (imputed)	N
1115	chr16	69554584	69554585	rs2311380	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	16q22.1		rs2311380-A	NR	1E-8		0.021212857	[0.014-0.029] years increase	NR [7400000] (imputed)	N
1115	chr16	69555875	69555876	rs889400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q22.1		rs889400-T	NR	4E-21		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1115	chr16	69556714	69556715	rs889398	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	16q22.1		rs889398-C	NR	2E-8	(EA)	1.05	NR	Affymetrix [~ 79000000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16q22.1		rs889398-C	0.588	6E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q22.1	NA	rs889398-T	0.4146	2E-23		0.0171	[0.014-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	16q22.1	NR	rs889398-T	0.4146	2E-23		0.0171	[0.014-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q22.1	NA	rs889398-T	0.4151	3E-32		0.0195	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	16q22.1	NA	rs889398-T	0.4151	3E-32		0.0195	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q22.1	NR	rs889398-C	NR	2E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1115	chr16	69556714	69556715	rs889398	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	16q22.1	MIR1538, CYB5B, TERF2, VPS4A, PDF, COG8, NIP7, TMED6, SNTB2, TANGO6, HAS3, CHTF8, CIRH1A, NQO1, NOB1, WWP2, MIR140, CLEC18A, PDXDC2P	rs889398-T	0.430194282716135	5E-11		0.017786881	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1115	chr16	69556714	69556715	rs889398	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q22.1	MIR1538	rs889398-C	0.579	2E-6		0.014	[0.0084-0.0198] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1115	chr16	69556714	69556715	rs889398	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	16q22.1	MIR1538	rs889398-C	0.573	5E-7	(EA)	0.016	[0.0095-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1115	chr16	69557842	69557843	rs35258807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs35258807-A	NR	3E-10		0.0268	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr16	69559314	69559315	rs4783719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q22.1	NR	rs4783719-G	0.676973	4E-11		0.013126	[0.0092-0.017] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1115	chr16	69559314	69559315	rs4783719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs4783719-G	0.657759	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
1115	chr16	69559314	69559315	rs4783719	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q22.1	NR	rs4783719-G	0.676966	3E-14		0.015064	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1115	chr16	69559695	69559696	rs4783720	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16q22.1	MIR1538	rs4783720-T	0.862	2E-8		0.0025	[0.0017-0.0033] unit increase	Affymetrix [NR] (imputed)	N
1115	chr16	69560330	69560330	rs11396409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q22.1		rs11396409-AC	NR	1E-35		0.028	[0.024-0.032] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1115	chr16	69563411	69563412	rs56096139	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	16q22.1	WWP2	rs56096139-C	NR	9E-7	(male)	0.9739944	[0.96-0.98]	Affymetrix [9869154] (imputed)	N
1115	chr16	69563889	69563890	rs7193778	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	16q22.1	CYB5B, MIR1538	rs7193778-T	0.8872	3E-7	(Japanese)	0.033	[0.02-0.046] unit decrease	Illumina [5864938] (imputed)	N
1115	chr16	69563889	69563890	rs7193778	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	16q22.1	NFAT5	rs7193778-T	0.86	8E-10		0.046	[0.030-0.062] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1115	chr16	69566308	69566309	rs12933292	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q22.1	NR	rs12933292-C	0.589625	8E-16		0.0163067	[0.012-0.02] unit increase	NR [NR]	N
1115	chr16	69566308	69566309	rs12933292	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16q22.1	NR	rs12933292-G	0.412	6E-12		0.010212	[0.0073-0.0131] unit increase	NR [9732723] (imputed)	N
1115	chr16	69567780	69567781	rs11646575	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	16q22.1	NFAT5	rs11646575-A	0.439	3E-10		0.0145	[0.01-0.019] unit increase	Illumina [~ 250000] (imputed)	N
1115	chr16	69568092	69568093	rs72799387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs72799387-T	NR	2E-9		0.0276	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr16	69568302	69568303	rs2032912	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q22.1	NR	rs2032912-G	0.5843	2E-19		0.0421	[0.033-0.051] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	ANKS1A, TCP11	rs62052820-?		2E-8				NR [7428630] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs62052820-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q22.1	MIR1538	rs62052820-A	0.1938	1E-26		0.0427	[0.035-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q22.1	MIR1538	rs62052820-A	0.2124	3E-18		0.041401	[0.032-0.051] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q22.1	NR	rs62052820-A	0.1947	2E-13	(women)	0.0424	[0.031-0.054] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q22.1	NR	rs62052820-A	0.1896	1E-9	(men)	0.0391	[0.027-0.052] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1115	chr16	69575237	69575238	rs62052820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q22.1		rs62052820-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1115	chr16	69575356	69575357	rs76207439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q22.1		rs76207439-A	NR	5E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1115	chr16	69575356	69575357	rs76207439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.1	NR	rs76207439-A	NR	5E-9		0.0252	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1115	chr16	69575356	69575357	rs76207439	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	16q22.1	MIR1538	rs76207439-A	0.0856	4E-7		0.0141	[0.0086-0.0196] unit increase	Affymetrix [~ 7740000] (imputed)	N
1115	chr16	69576893	69576894	rs9302604	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.1	NR	rs9302604-G	0.435	3E-19		0.00976662	[0.0076-0.0119] unit increase	NR [9732723] (imputed)	N
1115	chr16	69576893	69576894	rs9302604	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q22.1	NR	rs9302604-G	0.435	3E-13		0.018709522	[0.014-0.024] unit increase	NR [~ 10000000] (imputed)	N
1115	chr16	69578481	69578482	rs8062941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	16q22.1		rs8062941-G	0.844707	6E-12		0.0335542	[0.024-0.043] unit decrease	Illumina [13475706] (imputed)	N
1115	chr16	69578481	69578482	rs8062941	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q22.1	MIR1538	rs8062941-A	0.1524	1E-8	(East Asian)	0.0463	[0.03-0.062] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1115	chr16	69581470	69581471	rs117459045	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs117459045-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1115	chr16	69581911	69581912	rs4783722	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	16q22.1	NR	rs4783722-C	0.415	2E-9		0.00942456	[0.0064-0.0125] unit decrease	NR [9732723] (imputed)	N
1115	chr16	69581911	69581912	rs4783722	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	16q22.1	NR	rs4783722-C	0.413	4E-12		0.01543	[0.011-0.02] unit decrease	NR [9732723] (imputed)	N
1115	chr16	69588571	69588572	rs1364063	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16q22.1	COG4, NFAT5	rs1364063-C	0.43	6E-21		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1115	chr16	69588571	69588572	rs1364063	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	16q22.1	NFAT5	rs1364063-C	0.43	2E-8		2.1	[1.32-2.88] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1115	chr16	69590365	69590366	rs1549287	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	16q22.1	CYB5B, MIR1538	rs1549287-A	0.1541	2E-10	(Japanese)	0.0349	[0.024-0.046] unit increase	Illumina [1986983] (imputed)	N
1115	chr16	69590365	69590366	rs1549287	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	16q22.1	CYB5B, MIR1538	rs1549287-A	0.144	7E-8	(EA)	0.03	[0.019-0.041] unit increase	Illumina [1986983] (imputed)	N
1115	chr16	69590365	69590366	rs1549287	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	16q22.1	CYB5B, MIR1538	rs1549287-?	NR	1E-8		0.03315	[0.022-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1115	chr16	69591166	69591167	rs11644997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q22.1	NR	rs11644997-C	0.84992	1E-11		0.017403	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1115	chr16	69593354	69593355	rs12599637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q22.1		rs12599637-C	NR	6E-10		0.0722	[0.049-0.095] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1115	chr16	69593354	69593355	rs12599637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q22.1		rs12599637-C	NR	1E-16		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1115	chr16	69593354	69593355	rs12599637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q22.1		rs12599637-C	NR	2E-14		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1115	chr16	69593354	69593355	rs12599637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q22.1		rs12599637-C	NR	9E-23		0.0237	[0.019-0.028] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1115	chr16	69593354	69593355	rs12599637	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16q22.1	MIR1538, NFAT5	rs12599637-C	0.40682	5E-14		0.0509657	[0.038-0.064] unit decrease	Affymetrix [9463307] (imputed)	N
1116	chr16	69605612	69605613	rs10852456	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q22.1		rs10852456-G	0.583	2E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1116	chr16	69610001	69610002	rs244423	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	16q22.1	NFAT5	rs244423-A	0.156	2E-10	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [5864938] (imputed)	N
1116	chr16	69622103	69622104	rs11641050	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q22.1	NFAT5	rs11641050-?	NR	3E-8				Affymetrix, Illumina [at least 5248638] (imputed)	N
1116	chr16	69622761	69622762	rs244418	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16q22.1	NFAT5	rs244418-?	NR	4E-13		0.0194	[0.015-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1116	chr16	69623637	69623638	rs143000731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	16q22.1		rs143000731-A	0.107807	1E-15		0.0497704	[0.038-0.062] unit decrease	Illumina [13478792] (imputed)	N
1116	chr16	69627246	69627247	rs11648249	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NQO1	5,365 Icelandic ancestry individuals	NA	16q22.1		rs11648249-T	0.2557	2E-27		0.231745	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
1116	chr16	69627246	69627247	rs11648249	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.1	NQO1	rs11648249-A	0.75125	7E-21	(NQO1, 9837_60_3)	0.269632	[0.21-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1116	chr16	69627246	69627247	rs11648249	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	16q22.1	NFAT5	rs11648249-?	NR	6E-11		0.02393	[0.017-0.031] unit decrease novel	Illumina [6108953] (imputed)	N
1116	chr16	69630852	69630853	rs12447326	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs12447326-?	NR	8E-7				Illumina [1510701]	N
1116	chr16	69630852	69630853	rs12447326	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs12447326-?	NR	7E-10				Illumina [1510701]	N
1116	chr16	69633122	69633123	rs35674882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	16q22.1		rs35674882-C	0.127221	2E-10		0.0305479	[0.021-0.04] unit decrease	Illumina [13478778] (imputed)	N
1116	chr16	69635915	69635916	rs11643240	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.1	NFAT5	rs11643240-A	0.735133	2E-10		0.0134247	[0.0093-0.0176] unit increase	NR [13737936] (imputed)	N
1116	chr16	69635915	69635916	rs11643240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.1		rs11643240-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1116	chr16	69635915	69635916	rs11643240	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.1		rs11643240-?	NR	2E-13		0.016673	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1116	chr16	69640216	69640217	rs33063	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	16q22.1	NFAT5	rs33063-A		1E-10		0.046	[0.032-0.06] mg/dl increase	NR [NR] (imputed)	N
1116	chr16	69640216	69640217	rs33063	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q22.1	NFAT5	rs33063-A		2E-7		0.188	unit increase	Affymetrix [at least 2696785] (imputed)	N
1116	chr16	69646121	69646122	rs11639947	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11639947-?	NR	8E-9				Illumina [1510701]	N
1116	chr16	69646121	69646122	rs11639947	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to paclitaxel and epirubicin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11639947-?	NR	7E-7				Illumina [1510701]	N
1116	chr16	69646121	69646122	rs11639947	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11639947-?	NR	4E-9				Illumina [1510701]	N
1116	chr16	69651865	69651866	rs862320	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q22.1	NFAT5	rs862320-C	0.590358	6E-25		0.0143991	[0.012-0.017] unit increase	Affymetrix [12370749]	N
1116	chr16	69651865	69651866	rs862320	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs862320-?	NR	3E-32				Affymetrix [~ 8270000] (imputed)	N
1116	chr16	69651865	69651866	rs862320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.1		rs862320-?	NR	7E-32				NR [~ 8900000] (imputed)	N
1116	chr16	69651865	69651866	rs862320	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q22.1	NFAT5	rs862320-C	0.5783	4E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1116	chr16	69653695	69653696	rs39999	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	16q22.1	NFAT5	rs39999-?	NR	5E-16		0.04633	[0.035-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1116	chr16	69657995	69657996	rs244420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	16q22.1		rs244420-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1116	chr16	69666682	69666683	rs244415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q22.1		rs244415-A	NR	2E-8		0.0513	[0.033-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1116	chr16	69666682	69666683	rs244415	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q22.1	NR	rs244415-G	0.6296	2E-22		0.0401	[0.032-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1116	chr16	69666682	69666683	rs244415	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	16q22.1	NFAT5	rs244415-A	0.412872431129737	4E-9		0.0467	[0.031-0.062] unit decrease	NR [5035015] (imputed)	N
1116	chr16	69667966	69667967	rs139102618	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	16q22.1	NR	rs139102618-?	NR	1E-6		0.5813	[0.36-0.8] unit decrease	Illumina [at least 560000] (imputed)	N
1116	chr16	69676085	69676086	rs2361838	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs2361838-?	NR	2E-7				Illumina [1510701]	N
1116	chr16	69676085	69676086	rs2361838	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs2361838-?	NR	1E-8				Illumina [1510701]	N
1116	chr16	69681064	69681065	rs200933617	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	16q22.1	NFAT5	rs200933617-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1116	chr16	69681064	69681065	rs200933617	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	16q22.1	NFAT5	rs200933617-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1116	chr16	69681064	69681065	rs200933617	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	16q22.1	NFAT5	rs200933617-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1116	chr16	69686676	69686676	rs10530053	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16q22.1	NR	rs10530053-C	0.4091	6E-22		0.024350278	[0.019-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1116	chr16	69686911	69686912	rs6499240	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	16q22.1	NFAT5	rs6499240-G	0.59	4E-12		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1116	chr16	69693034	69693035	rs56374617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q22.1		rs56374617-A	NR	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1116	chr16	69693034	69693035	rs56374617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q22.1		rs56374617-A	NR	1E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1116	chr16	69693034	69693035	rs56374617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q22.1	NFAT5	rs56374617-A	0.319345	3E-10		0.015163596	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1116	chr16	69693034	69693035	rs56374617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q22.1	NFAT5	rs56374617-A	0.319338	7E-13		0.017235342	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1116	chr16	69700200	69700201	rs62049973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	16q22.1	NFAT5	rs62049973-?	NR	2E-18		0.04806	[0.037-0.059] unit increase	Illumina [6108953] (imputed)	N
1116	chr16	69704341	69704342	rs7192380	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	16q22.1	NFAT5	rs7192380-?		2E-6		1.28	[1.16-1.42]	Illumina [1444884]	N
1116	chr16	69718111	69718112	rs77944668	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q22.1	NFAT5, NQO1	rs77944668-G	0.6984	1E-8		5.668	NR z score decrease	Illumina [26237160] (imputed)	N
1116	chr16	69718111	69718112	rs77944668	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.1	NQO1	rs77944668-A	0.193	2E-154	(NAD(P)H dehydrogenase [quinone] 1, NQO1.9837.60.3)	0.75	[0.69-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
1116	chr16	69727479	69727480	rs145602190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q22.1	NR	rs145602190-G	NR	7E-11		0.0995	[0.07-0.129] unit decrease	Affymetrix [9000000] (imputed)	N
1116	chr16	69729181	69729182	rs199749272	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	16q22.1	NFAT5	rs199749272-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1117	chr16	69733459	69733460	rs7359336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q22.1		rs7359336-G	0.412404	2E-8		0.0222913	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1117	chr16	69733459	69733460	rs7359336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs7359336-G	0.412404	2E-8		0.0225979	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1117	chr16	69733459	69733460	rs7359336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q22.1		rs7359336-G	0.412404	1E-8		0.0225593	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1117	chr16	69733459	69733460	rs7359336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q22.1		rs7359336-G	0.412404	4E-8		0.0216754	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
1117	chr16	69733459	69733460	rs7359336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q22.1		rs7359336-G	0.412404	2E-8		0.0222212	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1117	chr16	69733664	69733665	rs7359387	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	16q22.1	NFAT5	rs7359387-T	0.7662	4E-8		0.0046	[0.003-0.0062] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1117	chr16	69734562	69734563	rs11641233	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11641233-?	NR	7E-7				Illumina [1510701]	N
1117	chr16	69734562	69734563	rs11641233	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11641233-?	NR	7E-9				Illumina [1510701]	N
1117	chr16	69734562	69734563	rs11641233	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to arsenic trioxide	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs11641233-?	NR	9E-7				Illumina [1510701]	N
1117	chr16	69735270	69735271	rs6499244	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	16q22.1	NR	rs6499244-A	0.56	4E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1117	chr16	69735270	69735271	rs6499244	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	16q22.1	NFAT5	rs6499244-?	NR	9E-11		0.028	[0.020-0.037] unit increase	Illumina [12039492]	N
1117	chr16	69736850	69736851	rs12232410	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs12232410-?	NR	8E-10				Illumina [1510701]	N
1117	chr16	69737467	69737468	rs9980	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	16q22.1	NFAT5, NQO1, NOB1, CYB5B	rs9980-G	0.14	6E-12		0.06	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1117	chr16	69737467	69737468	rs9980	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	16q22.1	NFAT5, NQO1, NOB1, CYB5B	rs9980-G	0.14	6E-10	(EA)	0.06	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1117	chr16	69742386	69742387	rs56125990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q22.1	NQO1	rs56125990-G	0.152971	8E-11		0.0203866	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr16	69742386	69742387	rs56125990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs56125990-G	0.147479	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1117	chr16	69742386	69742387	rs56125990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs56125990-A	0.851449	6E-13				Affymetrix, Illumina [17210439] (imputed)	N
1117	chr16	69742386	69742387	rs56125990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q22.1	NR	rs56125990-A	0.847652	9E-15		0.020802	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1117	chr16	69745144	69745145	rs1800566	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1800566-?	NR	9E-9				Illumina [1510701]	N
1117	chr16	69745144	69745145	rs1800566	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to paclitaxel and epirubicin	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1800566-?	NR	7E-7				Illumina [1510701]	N
1117	chr16	69745144	69745145	rs1800566	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1800566-?	NR	2E-9				Illumina [1510701]	N
1117	chr16	69745144	69745145	rs1800566	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	16q22.1	NQO1	rs1800566-A	0.183	2E-8		0.0172	[0.011-0.023] unit increase	Illumina [~ 250000] (imputed)	N
1117	chr16	69750848	69750849	rs2917677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16q22.1		rs2917677-T	NR	1E-8		0.0301	[0.02-0.04] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1117	chr16	69750848	69750849	rs2917677	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q22.1	NQO1	rs2917677-C	0.58951	3E-20		0.0187348	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
1117	chr16	69750848	69750849	rs2917677	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q22.1	NQO1	rs2917677-T	0.409065	9E-9		0.032871775	[0.022-0.044] unit decrease	Affymetrix [7288503] (imputed)	N
1117	chr16	69753258	69753259	rs45467396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q22.1	NR	rs45467396-G	NR	1E-11		0.0585	[0.041-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1117	chr16	69757680	69757681	rs1837016	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q22.1	NQO1	rs1837016-T	0.6117	7E-11		0.017263984	[0.012-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1117	chr16	69757827	69757828	rs1437135	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to trametinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1437135-?	NR	2E-7				Illumina [1510701]	N
1117	chr16	69757827	69757828	rs1437135	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to erlotinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1437135-?	NR	5E-9				Illumina [1510701]	N
1117	chr16	69757827	69757828	rs1437135	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to arsenic trioxide	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q22.1		rs1437135-?	NR	9E-7				Illumina [1510701]	N
1117	chr16	69763279	69763280	rs113441031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q22.1		rs113441031-T	NR	3E-16		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1117	chr16	69764411	69764412	rs1469908	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16q22.1	NOB1	rs1469908-T	0.5881	6E-12		0.014059351	[0.01-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
1117	chr16	69782575	69782575	rs145944004	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.1	NR	rs145944004-GA	0.039	4E-17	(NAD(P)H dehydrogenase [quinone] 1, NQO1.9837.60.3)	0.55	[0.41-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
1117	chr16	69789515	69789516	rs12149704	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	NOB1	rs12149704-A	0.0547	4E-11		0.5477	[0.39-0.71] mmHg increase	Affymetrix [NR] (imputed)	N
1117	chr16	69795322	69795323	rs56140069	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q22.1	WWP2	rs56140069-A	0.8219	1E-11		0.0025	[0.0015-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1117	chr16	69802864	69802865	rs62050038	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q22.1	WWP2	rs62050038-A	0.8257	1E-15		0.0028	[0.002-0.0036] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1117	chr16	69811994	69811995	rs57824734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q22.1		rs57824734-T	NR	3E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1117	chr16	69829162	69829162	rs148604553	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.1	NR	rs148604553-TAC	0.127	6E-79	(NAD(P)H dehydrogenase [quinone] 1, NQO1.9837.60.3)	0.75	[0.67-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
1117	chr16	69830108	69830109	rs76614752	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q22.1	NR	rs76614752-C	0.02962	5E-9	(HINT2)	0.05964	NR unit decrease	Illumina [1671387] (imputed)	N
1117	chr16	69830327	69830328	rs6499255	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	16q22.1	WWP2	rs6499255-G		5E-9		1.027	[NR]	Affymetrix [up to 79000000] (imputed)	N
1117	chr16	69830327	69830328	rs6499255	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q22.1	WWP2	rs6499255-?	NR	6E-20		0.028200578	[0.022-0.034] unit decrease	Illumina [27896057] (imputed)	N
1117	chr16	69830327	69830328	rs6499255	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	16q22.1	WWP2	rs6499255-A	NR	1E-6		0.11	[0.07-0.15] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1117	chr16	69830414	69830415	rs60231938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q22.1		rs60231938-A	0.329252	1E-17		0.0185784	[0.014-0.023] unit decrease	Illumina [13479295] (imputed)	N
1117	chr16	69835100	69835101	rs12923438	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	16q22.1	WWP2	rs12923438-A	0.49712399	2E-8		0.175198	[0.11-0.24] unit decrease	Affymetrix [9463307] (imputed)	N
1117	chr16	69835100	69835101	rs12923438	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	16q22.1	WWP2	rs12923438-A	0.49712399	7E-6		0.00947205	[0.0053-0.0136] unit decrease	Affymetrix [9463307] (imputed)	N
1117	chr16	69849545	69849546	rs12926791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16q22.1		rs12926791-?	NR	1E-36				NR [~ 8900000] (imputed)	N
1117	chr16	69859181	69859182	rs62051384	29534260	Kim SK	2018-03-13	Int J Sports Med	Two Genetic Variants Associated with Plantar Fascial Disorders.	Plantar fascial disorders	17,627 European ancestry cases, 2,044 Latin American cases, 1,300 East Asian cases, 658 African American cases, 65,637 European ancestry controls, 6,516 Latin American controls, 6,218 East Asian controls, 2,508 African American controls	NA	16q22.1	WWP2	rs62051384-T	0.373	2E-8		1.07	[1.04-1.09]	Affymetrix [9322588] (imputed)	N
1118	chr16	69862108	69862109	rs2937124	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.1	WWP2	rs2937124-T	0.3417	7E-11		0.0202	[0.014-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1118	chr16	69866726	69866727	rs9630631	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	16q22.1	NR	rs9630631-T	0.382704	2E-9		0.043691795	[0.029-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1118	chr16	69867834	69867835	rs4985445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q22.1		rs4985445-G	NR	1E-45		0.0182	[0.016-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1118	chr16	69867834	69867835	rs4985445	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q22.1	WWP2	rs4985445-A	0.5435	3E-20		0.0175	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1118	chr16	69867834	69867835	rs4985445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs4985445-?	NR	2E-47				NR [~ 8900000] (imputed)	N
1118	chr16	69873830	69873831	rs78432537	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q22.1	WWP2	rs78432537-?	NR	5E-9		0.0299	[0.021-0.039] unit increase	Affymetrix [5701386] (imputed)	N
1118	chr16	69878533	69878534	rs2173714	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	16q22.1		rs2173714-?	NR	2E-8				NR [7857346] (imputed)	N
1118	chr16	69878533	69878534	rs2173714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q22.1		rs2173714-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1118	chr16	69878533	69878534	rs2173714	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.1	NR	rs2173714-?	NR	1E-6		4.896	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1118	chr16	69884305	69884306	rs73568154	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs73568154-A	NR	4E-14		1.0539		Affymetrix [9869154] (imputed)	N
1118	chr16	69884305	69884306	rs73568154	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		WWP2	rs73568154-A	NR	9E-9		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
1118	chr16	69884618	69884619	rs8057620	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q22.1	NFAT5, NOB1, NQO1, WWP2	rs8057620-T	0.465254	5E-6		0.01018	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1118	chr16	69884618	69884619	rs8057620	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q22.1	NFAT5, NOB1, NQO1, WWP2	rs8057620-T	0.465254	3E-6	(males)	0.01371	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1118	chr16	69884618	69884619	rs8057620	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q22.1	NFAT5, NOB1, NQO1, WWP2	rs8057620-T	0.4653	5E-6	(males)	0.00948	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1118	chr16	69884618	69884619	rs8057620	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q22.1	NFAT5, NOB1, NQO1, WWP2	rs8057620-T	0.465254	3E-12		0.01745	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1118	chr16	69884618	69884619	rs8057620	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q22.1	NFAT5, NOB1, NQO1, WWP2	rs8057620-T	0.465254	2E-17	(females)	0.02438	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1118	chr16	69884928	69884929	rs56117028	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	16q22.1	WWP2	rs56117028-A	0.251	3E-7		1.177	[1.106-1.253]	Affymetrix [28509962] (imputed)	N
1118	chr16	69885165	69885166	rs4985447	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	16q22.1	WWP2	rs4985447-?	0.502	8E-11		1.0652168	[1.05-1.09]	Affymetrix [NR] (imputed)	N
1118	chr16	69887513	69887514	rs3790087	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16q22.1	WWP2	rs3790087-G	0.124339757254397	4E-6		0.0037534	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1118	chr16	69891509	69891510	rs8047194	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q22.1	WWP2	rs8047194-T	0.4961	1E-18		0.0208	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1118	chr16	69891509	69891510	rs8047194	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16q22.1	WWP2	rs8047194-T	0.4961	7E-19		0.0208	[0.016-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1118	chr16	69896247	69896248	rs11645565	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16q22.1	WWP2	rs11645565-A	0.4308	7E-16		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1118	chr16	69897468	69897469	rs7200258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	16q22.1		rs7200258-G	NR	2E-12		0.0583	[0.042-0.075] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1118	chr16	69903164	69903165	rs141767645	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q22.1	NFAT5	rs141767645-T	0.015045874	2E-8		1.3023	[0.85-1.76] unit increase	Affymetrix [~ 9800000] (imputed)	N
1118	chr16	69907444	69907445	rs3790076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q22.1		rs3790076-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1118	chr16	69909114	69909115	rs11075744	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q22.1	WWP2	rs11075744-A	0.5556	2E-6		0.0322	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chr16	69911966	69911967	rs151186597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q22.1	Intergenic	rs151186597-T	0.9429	1E-9	(MTAG)	0.0236	[0.016-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1118	chr16	69911966	69911967	rs151186597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q22.1	Intergenic	rs151186597-T	0.9429	4E-8		0.0231	[0.015-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1118	chr16	69913995	69913996	rs8052428	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q22.1	NFAT5	rs8052428-T	0.369	3E-6		0.346	[0.17-0.52] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1118	chr16	69923562	69923563	rs4146819	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16q22.1	NR	rs4146819-A	0.5773	7E-19		0.0164	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1118	chr16	69928145	69928146	rs539258868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q22.1		rs539258868-A	NR	5E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1118	chr16	69928145	69928146	rs539258868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q22.1	WWP2	rs539258868-A	0.199122	4E-10		0.018689176	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1118	chr16	69940360	69940361	rs11075747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q22.1		rs11075747-A	NR	5E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1118	chr16	69940360	69940361	rs11075747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q22.1		rs11075747-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1118	chr16	69944334	69944335	rs4985376	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q22.1	WWP2	rs4985376-G	0.372146	3E-12		0.00153134	[0.0011-0.002] unit decrease	Affymetrix [13995440] (imputed)	N
1118	chr16	69953507	69953508	rs4985459	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	16q22.1		rs4985459-A	NR	8E-9	(EA)	1.06	NR	Affymetrix [~ 79000000] (imputed)	N
1118	chr16	69955689	69955690	rs34195470	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	16q22.1		rs34195470-A	0.4453	3E-13		0.9490441	[0.9357455-0.962531718]	Affymetrix, Illumina [NR] (imputed)	N
1118	chr16	69955689	69955690	rs34195470	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	16q22.1	WWP2	rs34195470-G	NR	3E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [11554240] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q22.1		rs77870048-T	NR	7E-23		0.0495	[0.04-0.059] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q22.1		rs77870048-T	NR	9E-66		0.0815	[0.072-0.091] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q22.1		rs77870048-T	NR	1E-9		0.1522	[0.1-0.2] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	16q22.1	WWP2	rs77870048-C	0.949754	2E-8		1.15	[1.09-1.20]	NR [10903881] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	16q22.1	NR	rs77870048-T	NR	2E-9		0.0324	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q22.1		rs77870048-?	NR	9E-31				NR [~ 8900000] (imputed)	N
1118	chr16	69965020	69965021	rs77870048	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	WWP2	rs77870048-T	0.3416	4E-16		0.4982	[0.38-0.62] mmHg decrease	Affymetrix [NR] (imputed)	N
1118	chr16	69969298	69969299	rs62053262	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	16q22.1		rs62053262-C	0.949218	3E-34		0.186533	[0.16-0.22] increase	Affymetrix [NR]	N
1118	chr16	69969298	69969299	rs62053262	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	16q22.1		rs62053262-C	0.949246	8E-33		0.199419	[0.17-0.23] increase	Affymetrix [NR]	N
1118	chr16	69969298	69969299	rs62053262	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	WWP2	rs62053262-G	0.9539	1E-33		0.7799	[0.65-0.91] mmHg decrease	Affymetrix [NR] (imputed)	N
1118	chr16	69972485	69972486	rs9302605	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	16q22.1	WWP2	rs9302605-A	0.771	6E-9		0.0256	[0.017-0.034] unit increase	Illumina [~ 250000] (imputed)	N
1118	chr16	69974545	69974546	rs3748387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q22.1		rs3748387-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1118	chr16	69979270	69979271	rs74249229	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16q22.1	PDPR	rs74249229-T	0.05	2E-11	(Pyruvate)	0.15	[0.11-0.19] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1118	chr16	69987750	69987751	rs71397998	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q22.1		rs71397998-G	0.738884	2E-10		0.0326032	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1119	chr16	70032958	70032959	rs71399907	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	16q22.1	PDXDC2P	rs71399907-?	NR	1E-6		0.377	[0.22-0.53] unit increase	Illumina [6319684] (imputed)	N
1119	chr16	70040397	70040398	rs3973397	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q22.1	PDXDC2P	rs3973397-A	0.48	3E-8		22.38	[14.44-30.32] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1119	chr16	70040397	70040398	rs3973397	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q22.1	PDXDC2P	rs3973397-A	0.39	8E-7	(EA)	27.35	[16.51-38.19] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1119	chr16	70045747	70045748	rs929843	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	16q22.1	COG4, WWP2	rs929843-A	0.23	1E-11		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1119	chr16	70063530	70063531	rs117649976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs117649976-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1119	chr16	70078959	70078960	rs8061221	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	16q22.1		rs8061221-G	0.254448	6E-35		0.0579818	[0.049-0.067] unit decrease	NR [11722792] (imputed)	N
1119	chr16	70118214	70118216	rs200337503	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q22.1	NFAT5	rs200337503-?	0.026169631	7E-13		1.3056	[0.95-1.66] unit increase	Affymetrix [~ 9800000] (imputed)	N
1120	chr16	70191117	70191118	rs4985405	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting lactate	4,734 individuals	NA	16q22.1		rs4985405-G	0.029818802	4E-9		0.407969	[0.27-0.54] mmol/l decrease	Illumina [7701709] (imputed)	N
1120	chr16	70233834	70233835	rs147381998	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q22.1	NFAT5	rs147381998-A	0.026754249	6E-8		0.9886	[0.63-1.35] unit increase	Affymetrix [~ 9800000] (imputed)	N
1120	chr16	70239241	70239241	rs751768773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q22.1	RP11-296I10.5, AC009060.1	rs751768773-GC	0.393821	1E-9		0.014517935	[0.0099-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr16	70241565	70241566	rs9924898	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	16q22.1	CLEC18C	rs9924898-G	0.50573	5E-8		1.0240723	NR	Affymetrix [~ 9600000] (imputed)	N
1121	chr16	70270107	70270108	rs71384763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs71384763-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1121	chr16	70284052	70284053	rs150309683	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	16q22.1		rs150309683-T	0.972	5E-6		0.8	[0.729-0.879]	Affymetrix, Illumina [NR] (imputed)	N
1121	chr16	70303579	70303580	rs2070203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs2070203-?	NR	9E-19				Affymetrix [~ 8270000] (imputed)	N
1121	chr16	70308837	70308837	rs562771447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	16q22.1		rs562771447-T,rs562771447-T	0.883299	2E-8		0.036443	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
1121	chr16	70308837	70308837	rs562771447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	16q22.1		rs562771447-T,rs562771447-T	0.883299	2E-8		0.036443	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
1121	chr16	70309236	70309237	rs12149660	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q22.1	AARS	rs12149660-G	0.88505	6E-14		0.0162176	[0.012-0.02] unit increase	Affymetrix [12370749]	N
1121	chr16	70309236	70309237	rs12149660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs12149660-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1121	chr16	70309236	70309237	rs12149660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.1		rs12149660-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1121	chr16	70315910	70315911	rs775208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q22.1		rs775208-C	NR	2E-10		0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1121	chr16	70334171	70334172	rs62049427	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q22.1	DDX19B	rs62049427-G	0.935435	2E-8		0.024648	[0.016-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1121	chr16	70334171	70334172	rs62049427	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	DDX19B	rs62049427-A	0.0563	9E-12		0.5592	[0.4-0.72] mmHg increase	Affymetrix [NR] (imputed)	N
1121	chr16	70358494	70358495	rs61757207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q22.1		rs61757207-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1121	chr16	70358494	70358495	rs61757207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.1		rs61757207-A	0.9854	1E-8		0.0359	[0.024-0.048] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1121	chr16	70358494	70358495	rs61757207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.1	Intergenic	rs61757207-A	0.9854	1E-9	(MTAG)	0.0352	[0.024-0.047] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1121	chr16	70360992	70360993	rs191518756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs191518756-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1121	chr16	70368908	70368909	rs12325419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	16q22.1		rs12325419-G	0.884675	2E-31		0.074157	[0.062-0.087] unit increase	NR [11722792] (imputed)	N
1121	chr16	70368908	70368909	rs12325419	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	16q22.1	NR	rs12325419-A	NR	4E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1121	chr16	70378916	70378917	rs75950518	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Valine)	16,596 European ancestry individuals	NA	16q22.1	DDX19A	rs75950518-C	NR	3E-6		0.096	[0.056-0.136] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1121	chr16	70378916	70378917	rs75950518	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Isoleucine)	16,596 European ancestry individuals	NA	16q22.1	DDX19A	rs75950518-C	0.11	2E-8		0.11	[0.073-0.147] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
1121	chr16	70384433	70384434	rs80229424	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.1		rs80229424-C	0.966728	2E-11		0.076632	[0.054-0.099] unit decrease	NR [11722792] (imputed)	N
1122	chr16	70386537	70386538	rs11294947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q22.1		rs11294947-A	NR	5E-8		0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1122	chr16	70426212	70426213	rs56041751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs56041751-T	NR	2E-9		0.0449	[0.03-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1122	chr16	70491654	70491655	rs62049035	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	FUK	rs62049035-A	0.0584	9E-31		0.6447	[0.54-0.75] mmHg increase	Affymetrix [NR] (imputed)	N
1122	chr16	70491654	70491655	rs62049035	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.1	FUK	rs62049035-A	0.3432	2E-14		0.4177	[0.31-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
1122	chr16	70497465	70497466	rs17880218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs17880218-C	0.963613	2E-8		0.0617791	[0.04-0.083] unit decrease	NR [11722792] (imputed)	N
1122	chr16	70497465	70497466	rs17880218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.1		rs17880218-C	0.963613	2E-8		0.0617023	[0.04-0.083] unit increase	NR [11722792] (imputed)	N
1122	chr16	70502609	70502610	rs12446395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q22.1		rs12446395-G	NR	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1122	chr16	70505358	70505359	rs11861805	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	FUK	rs11861805-T	0.049	8E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1122	chr16	70505358	70505359	rs11861805	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q22.1	FUK	rs11861805-T	0.049	6E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1122	chr16	70513009	70513010	rs17881561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	16q22.1	NR	rs17881561-T	NR	4E-10		0.0298	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1123	chr16	70535492	70535493	rs146512116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs146512116-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1123	chr16	70541177	70541178	rs9939252	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q22.1	COG4	rs9939252-A	0.9947	3E-6		0.2637	[0.15-0.38] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1123	chr16	70548296	70548297	rs3931036	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q22.1	COG4	rs3931036-G	0.0677675	2E-10		0.00269121	[0.0018-0.0036] unit decrease	Affymetrix [13995440] (imputed)	N
1123	chr16	70548296	70548297	rs3931036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs3931036-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1123	chr16	70590897	70590898	rs116924445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q22.1	NR	rs116924445-T	NR	3E-9		0.0557	[0.037-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
1123	chr16	70626918	70626919	rs117592625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q22.1	Intergenic	rs117592625-A	0.0537	3E-8	(MTAG)	0.0202	[0.013-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr16	70626918	70626919	rs117592625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q22.1	Intergenic	rs117592625-A	0.0539	5E-8	(MTAG)	0.0277	[0.018-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr16	70636537	70636538	rs78927322	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	16q22.1	IL34, COG4, SF3B3, SNORD111B, SNORD111, MTSS1L, VAC14	rs78927322-G	0.01	1E-7		2.85	[1.85-3.85] unit increase	Illumina [8437147] (imputed)	N
1123	chr16	70636994	70636995	rs1006985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q22.1		rs1006985-T	NR	5E-11		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1124	chr16	70658201	70658202	rs28825742	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	16q22.1	IL34	rs28825742-G	0.022	8E-6		0.093	[0.052-0.134] unit increase	Illumina [7358575] (imputed)	N
1124	chr16	70659802	70659803	rs34538878	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q22.1	NR	rs34538878-C	0.4571	7E-13				NR [9056863] (imputed)	N
1124	chr16	70660242	70660243	rs13330163	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q22.1	NR	rs13330163-G	0.4576	4E-8		0.021	[0.014-0.028] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1124	chr16	70660545	70660546	rs8053536	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	WWP2, CLEC18A, PDPR, CLEC18C, AC009060.1, FKSG63, EXOSC6, AARS, DDX19B, RP11-529K1.3, DDX19A, ST3GAL2, FUK, COG4, SF3B3, IL34, MTSS1L, FLJ00418	rs8053536-?		2E-40				NR [7428630] (imputed)	N
1124	chr16	70661990	70661991	rs4985413	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q22.1		rs4985413-C	0.37	3E-14		7.59	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr16	70661990	70661991	rs4985413	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q22.1		rs4985413-C	0.37	2E-15		7.96	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr16	70661990	70661991	rs4985413	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q22.1	NR	rs4985413-C	0.3608	1E-17				NR [9056863] (imputed)	N
1124	chr16	70661990	70661991	rs4985413	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	16q22.1		rs4985413-?	NR	5E-9				NR [9705931] (imputed)	N
1124	chr16	70670655	70670656	rs149131629	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q22.1	NR	rs149131629-?	NR	1E-8				Illumina [7760689] (imputed)	N
1124	chr16	70677067	70677068	rs35381200	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	16q22.1	IL34	rs35381200-?	NR	7E-9		0.0772	[0.051-0.103] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1124	chr16	70677067	70677068	rs35381200	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	16q22.1	IL34	rs35381200-T	0.646	3E-8		0.074	[0.049-0.099] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1124	chr16	70677784	70677785	rs6499330	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	FBXL7	rs6499330-?		4E-9				NR [7428630] (imputed)	N
1124	chr16	70681183	70681184	rs8061569	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	16q22.1	LARS2, LIMD1, SACM1L, SLC6A20	rs8061569-?		2E-35				NR [7428630] (imputed)	N
1124	chr16	70681183	70681184	rs8061569	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16q22.1	KIF6, DAAM2	rs8061569-?		2E-42				NR [7428630] (imputed)	N
1124	chr16	70681183	70681184	rs8061569	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16q22.1	TNIK	rs8061569-?		1E-35				NR [7428630] (imputed)	N
1124	chr16	70682693	70682694	rs2168608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.1	NR	rs2168608-A	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1124	chr16	70682693	70682694	rs2168608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.1	NR	rs2168608-A	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1124	chr16	70682693	70682694	rs2168608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.1	NR	rs2168608-A	NR	4E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1124	chr16	70683177	70683178	rs9933834	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q22.1		rs9933834-G	0.36	4E-20		9.19	z score increase	Affymetrix [9061022] (imputed)	N
1124	chr16	70684860	70684861	rs57752020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	16q22.1		rs57752020-C	0.689789	3E-18		0.0386604	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1124	chr16	70690165	70690166	rs4985555	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q22.1	IL34	rs4985555-A	0.501462	4E-10		0.00874366	[0.006-0.0115] unit increase	Affymetrix [12370749]	N
1124	chr16	70691307	70691308	rs12935589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.1		rs12935589-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1124	chr16	70693999	70694000	rs4985556	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	16q22.1	IL34	rs4985556-A	0.117	4E-10		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1124	chr16	70701410	70701411	rs7195572	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	16q22.1	MTSS1L	rs7195572-?	NR	9E-8			NR	Affymetrix [2067592] (imputed)	N
1124	chr16	70712760	70712761	rs142665473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.1		rs142665473-G	0.965482	1E-11		0.0771887	[0.055-0.099] unit increase	NR [11722792] (imputed)	N
1124	chr16	70723313	70723314	rs11075779	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.1	NR	rs11075779-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1124	chr16	70729953	70729954	rs62047964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q22.1		rs62047964-T	NR	9E-11		0.0283	[0.02-0.037] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1124	chr16	70729953	70729954	rs62047964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q22.1		rs62047964-T	NR	4E-8		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1124	chr16	70729953	70729954	rs62047964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.1		rs62047964-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1124	chr16	70740641	70740642	rs4985417	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q22.1	Intergenic	rs4985417-A	0.4808	3E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1124	chr16	70742535	70742536	rs11640251	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Diffuse cutaneous systemic sclerosis	574 European ancestry cases, 3,466 European ancestry controls, 201 African American cases, 260 African American controls	NA	16q22.1	IL34, ABBA-1, VAC14	rs11640251-?	NR	1E-6	(EA)			Illumina [126270]	N
1124	chr16	70755609	70755610	rs117006983	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q22.1	VAC14	rs117006983-A	0.01	4E-12		0.986	[0.71-1.26] unit increase	Affymetrix [~ 9800000] (imputed)	N
1124	chr16	70756065	70756066	rs7196032	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q22.1	NR	rs7196032-T	NR	4E-8		5.471	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1124	chr16	70756180	70756181	rs62047970	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q22.1	NR	rs62047970-T	0.428429	1E-10		0.040786732	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1124	chr16	70756180	70756181	rs62047970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q22.1	Intergenic	rs62047970-T	0.5623	2E-11	(MTAG)	0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1124	chr16	70756180	70756181	rs62047970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q22.1	Intergenic	rs62047970-T	0.5623	1E-10		0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1124	chr16	70769811	70769812	rs62048007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.1	NR	rs62048007-A	0.0594274	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
1124	chr16	70769811	70769812	rs62048007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q22.1	NR	rs62048007-A	0.062105	6E-12		0.027495	[0.02-0.035] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1124	chr16	70769811	70769812	rs62048007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q22.1	NR	rs62048007-A	0.061751	1E-11		0.027021	[0.019-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1124	chr16	70775454	70775455	rs875858	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	16q22.1	VAC14	rs875858-?	NR	2E-8		3.6	[2.21-5.84]	Illumina [498081]	N
1125	chr16	70785408	70785409	rs139309976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	16q22.1		rs139309976-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1125	chr16	70828268	70828269	rs8044133	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	16q22.1	VAC14, HYDIN, VAC14-AS1, MTSS1L, IL34, SF3B3, SNORD111, SNORD111B, COG4, FUK, ST3GAL2, DDX19A, LOC100506083, DDX19B, AARS, EXOSC6	rs8044133-?		6E-7	(recessive)	0.19	[0.12-0.26] unit decrease	Illumina [1492601] (imputed)	N
1125	chr16	70828326	70828327	rs4985368	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.1	NR	rs4985368-?	NR	3E-7		5.146	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1125	chr16	70899828	70899829	rs1106206	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	16q22.2		rs1106206-T	0.8401	9E-18		0.278	[0.21-0.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1125	chr16	70899828	70899829	rs1106206	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	16q22.2		rs1106206-T	0.8372	5E-48		0.287	[0.25-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1126	chr16	70913983	70913984	rs12149070	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	16q22.2	HYDIN	rs12149070-T	0.06	8E-6	(IL8)			Illumina [588352]	N
1126	chr16	70927077	70927078	rs8056750	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	16q22.2	HYDIN	rs8056750-T	0.3595	4E-8		0.0087	[0.0056-0.0118] unit increase	Affymetrix [~ 7740000] (imputed)	N
1126	chr16	70930369	70930370	rs56212732	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q22.2	HYDIN	rs56212732-C	0.915189	2E-9		0.0238427	[0.016-0.032] unit increase	Affymetrix [NR] (imputed)	N
1126	chr16	70956314	70956315	rs145090930	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q22.2	HYDIN	rs145090930-T	0.935877	9E-9		0.0259595	[0.017-0.035] unit increase	Affymetrix [NR] (imputed)	N
1126	chr16	70956314	70956315	rs145090930	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q22.2	HYDIN	rs145090930-?	NR	1E-11		0.0371	[0.027-0.047] unit decrease	Affymetrix [5701386] (imputed)	N
1126	chr16	70957609	70957610	rs111843364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	16q22.2	HYDIN	rs111843364-A	0.0664	5E-9		0.0431387	[0.029-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1126	chr16	70960805	70960806	rs4028355	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	16q22.2		rs4028355-T	0.3288	5E-8		0.0583	[0.037-0.079] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1126	chr16	70992954	70992954	rs377661799	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.2		rs377661799-A	0.942549	5E-36		0.113425	[0.096-0.131] unit decrease	NR [11722792] (imputed)	N
1127	chr16	71046521	71046522	rs113108263	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.2	HYDIN	rs113108263-T	0.0398	1E-14		0.729	[0.54-0.91] mmHg increase	Affymetrix [NR] (imputed)	N
1127	chr16	71047483	71047484	rs195656	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	16q22.2	HYDIN	rs195656-A		7E-6				Illumina [944512] (imputed)	N
1127	chr16	71065281	71065282	rs113604943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16q22.2		rs113604943-T	NR	3E-8		0.0296	[0.019-0.04] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1127	chr16	71078374	71078375	rs552489131	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.2		rs552489131-G	0.98497	7E-13		0.137806	[0.1-0.18] unit decrease	NR [11722792] (imputed)	N
1127	chr16	71085670	71085671	rs62039170	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.2	HYDIN	rs62039170-C	0.234	2E-9		0.5939	[0.4-0.79] mmHg increase	Affymetrix [NR] (imputed)	N
1127	chr16	71124922	71124923	rs7205580	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q22.2		rs7205580-T	0.9757	2E-14		0.6213	[0.46-0.78] unit decrease	Illumina [18215199] (imputed)	N
1127	chr16	71124922	71124923	rs7205580	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16- monocyte	3,622 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q22.2		rs7205580-T	0.9757	7E-16		0.6507	[0.49-0.81] unit decrease	Illumina [18215199] (imputed)	N
1127	chr16	71124922	71124923	rs7205580	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16+ monocyte	3,611 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q22.2		rs7205580-T	0.97563	5E-11		0.527	[0.37-0.68] unit decrease	Illumina [18210047] (imputed)	N
1128	chr16	71244274	71244275	rs8047583	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs8047583-G	NR	2E-10		0.0274	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1128	chr16	71261537	71261538	rs538118936	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	16q22.2		rs538118936-G	0.994297	4E-10		0.191178	[0.13-0.25] unit decrease	NR [11722792] (imputed)	N
1129	chr16	71311464	71311465	rs3094448	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q22.2	NR	rs3094448-?	NR	4E-10				Affymetrix [NR]	N
1129	chr16	71319645	71319646	rs3096380	30945699	Wei J	2019-04-04	Med Sci Monit	Genome-Wide Association Study Identifies a Genetic Prediction Model for Postoperative Survival in Patients with Hepatocellular Carcinoma.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry cases	758 East Asian ancestry cases	16q22.2	FTSJD1	rs3096380-?	NR	1E-17				Affymetrix [630573]	N
1129	chr16	71319645	71319646	rs3096380	30945673	Prasad G	2019-03-01	J Genet	Genomewide association study for C-reactive protein in Indians replicates known associations of common variants.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry individuals	758 East Asian ancestry individuals	16q22.2	FTSJD1	rs3096380-?	NR	1E-17				Affymetrix [630573]	N
1129	chr16	71349497	71349498	rs1424144	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16q22.2	NR	rs1424144-T	NR	2E-8		5.585	z score decrease	Affymetrix [10847151] (imputed)	N
1129	chr16	71359659	71359660	rs1559422	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	16q22.2	CALB2	rs1559422-?	NR	3E-8		0.00686237	[0.0044-0.0093] unit decrease	Affymetrix [NR] (imputed)	N
1129	chr16	71370017	71370018	rs9989410	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q22.2	CALB2	rs9989410-A	0.351	2E-9		0.0075	[0.0051-0.0099] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1129	chr16	71381878	71381879	rs12933065	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	16q22.2	CMTR2, CALB2	rs12933065-T	0.6478	5E-6	(female)	0.1001	[0.057-0.143] unit increase	NR [NR] (imputed)	N
1129	chr16	71382590	71382591	rs57796453	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs57796453-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1129	chr16	71396660	71396661	rs62055045	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q22.2	NR	rs62055045-G	NR	1E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1129	chr16	71428303	71428304	rs34623821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs34623821-G	NR	2E-9		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1129	chr16	71434160	71434161	rs11640031	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q22.2	CALB2	rs11640031-A	0.0802	2E-8		0.026657334	[0.017-0.036] unit increase	Affymetrix [~ 11515000] (imputed)	N
1130	chr16	71434709	71434710	rs192085336	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	16q22.2	NR	rs192085336-T	NR	8E-6		0.048655376	[0.027-0.07] unit increase	Illumina [NR] (imputed)	N
1130	chr16	71440755	71440756	rs891124	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	16q22.2	CALB2	rs891124-T	0.71	4E-8		1.024	[1.016-1.033]	Affymetrix [7736308] (imputed)	N
1130	chr16	71440755	71440756	rs891124	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Body mass index	772,825 individuals	NA	16q22.2	CALB2	rs891124-?	NR	4E-10		0.01	[0.0061-0.0139] unit increase	Affymetrix [NR]	N
1130	chr16	71440755	71440756	rs891124	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	16q22.2	NR	rs891124-T	0.71	9E-8		0.029	[0.019-0.039] unit increase	Affymetrix [NR] (imputed)	N
1130	chr16	71447269	71447270	rs12922830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q22.2		rs12922830-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1130	chr16	71452474	71452475	rs7192890	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q22.2	ZNF23	rs7192890-T	0.523	2E-11		0.008	[0.0056-0.0104] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1130	chr16	71464057	71464058	rs75986475	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	50,331 European ancestry women	NA	16q22.2		rs75986475-C	0.88	7E-9		0.436	[0.29-0.58] unit decrease	Affymetrix [8918919] (imputed)	N
1130	chr16	71472703	71472704	rs8049040	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	AC010547.9, RP11-510M2.4, RP11-510M2.8, ZNF19	rs8049040-G	0.4160804	6E-15	(Haptoglobin)	0.3541	[0.27-0.44] unit increase	Affymetrix [509946]	N
1130	chr16	71489572	71489573	rs574280455	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	16q22.2	ZNF23, AC010547.9	rs574280455-C	0.9984	5E-7		0.8625	[0.53-1.2] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1130	chr16	71509795	71509796	rs8050871	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q22.2	NR	rs8050871-G	0.6727	3E-6	(EA)	0.0315	[0.018-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
1131	chr16	71571281	71571282	rs117753658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs117753658-G	NR	1E-16		0.0746	[0.057-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr16	71571281	71571282	rs117753658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs117753658-G	NR	8E-15		0.0702	[0.053-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr16	71571281	71571282	rs117753658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs117753658-G	NR	1E-11		0.0615	[0.044-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr16	71578765	71578766	rs188955777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs188955777-G	0.02219	6E-14		0.494758	[0.37-0.62] unit increase	Illumina [7506463] (imputed)	N
1131	chr16	71578765	71578766	rs188955777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs188955777-G	0.02219	3E-15		0.518728	[0.39-0.65] unit increase	Illumina [7506463] (imputed)	N
1131	chr16	71579659	71579660	rs310332	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q22.2	NR	rs310332-?	NR	4E-7		0.0487	[0.03-0.068] unit increase	Illumina [at least 560000] (imputed)	N
1131	chr16	71579666	71579667	rs310333	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q22.2	NR	rs310333-A	0.247515	3E-8		0.040175255	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1131	chr16	71579666	71579667	rs310333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs310333-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1131	chr16	71579666	71579667	rs310333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q22.2	Intergenic	rs310333-A	0.2685	1E-8	(MTAG)	0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr16	71579666	71579667	rs310333	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q22.2	NR	rs310333-A	NR	4E-9		5.876	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr16	71579666	71579667	rs310333	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.2	NR	rs310333-?	NR	1E-7		5.255	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1131	chr16	71579666	71579667	rs310333	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q22.2	ZNF19	rs310333-A	NR	2E-8		0.019324489	[0.013-0.026] unit increase	Affymetrix [NR]	N
1131	chr16	71583858	71583859	rs2434885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2434885-C	NR	1E-13		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1131	chr16	71583858	71583859	rs2434885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2434885-C	0.801	1E-13	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1131	chr16	71583858	71583859	rs2434885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2434885-C	NR	5E-13		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1131	chr16	71583858	71583859	rs2434885	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2434885-C	0.801	2E-13	(EA)	0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1131	chr16	71587903	71587903	rs71389675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q22.2		rs71389675-C,rs71389675-C	0.436143	3E-20		0.041523	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
1131	chr16	71587903	71587903	rs71389675	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q22.2		rs71389675-C,rs71389675-C	0.436143	3E-20		0.041523	[0.033-0.05] unit decrease	NR [11722792] (imputed)	N
1131	chr16	71596004	71596005	rs172649	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting tyrosine	4,734 individuals	NA	16q22.2		rs172649-T	0.655853	2E-10	meal response (conditional)	0.144756	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1131	chr16	71610275	71610276	rs74344827	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs74344827-A	NR	2E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr16	71622206	71622207	rs7188406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q22.2		rs7188406-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1131	chr16	71623593	71623594	rs77147683	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q22.2	NR	rs77147683-A	0.233267	9E-9		0.00528616	[0.0033-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1131	chr16	71623593	71623594	rs77147683	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q22.2	NR	rs77147683-A	0.233267	9E-8		0.00553747	[0.0034-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
1131	chr16	71625208	71625209	rs4788811	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q22.2	intergenic	rs4788811-A	0.8589	3E-12		0.0193	[0.014-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1131	chr16	71625500	71625501	rs75121478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	16q22.2		rs75121478-G	0.253091	3E-9		0.0234909	[0.016-0.031] unit decrease	Illumina [13479091] (imputed)	N
1131	chr16	71625830	71625831	rs150851429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q22.2		rs150851429-G	0.984016	6E-120		0.395023	[0.36-0.43] unit decrease	NR [11722792] (imputed)	N
1131	chr16	71625830	71625831	rs150851429	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial tyrosine	4,348 individuals	NA	16q22.2		rs150851429-C	0.014879342	6E-12		0.648949	[0.46-0.83] mmol/l increase	Illumina [7701709] (imputed)	N
1131	chr16	71626245	71626246	rs71403855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs71403855-G	NR	4E-18		0.0478	[0.037-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1131	chr16	71626245	71626246	rs71403855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs71403855-G	NR	3E-19		0.0494	[0.039-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1131	chr16	71626245	71626246	rs71403855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs71403855-G	NR	4E-17		0.0464	[0.036-0.057] unit increase	Affymetrix [9000000] (imputed)	N
1131	chr16	71634810	71634811	rs4788815	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q22.2	NR	rs4788815-T	0.6518	7E-9		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1131	chr16	71634810	71634811	rs4788815	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q22.2	TAT	rs4788815-A	0.3428	3E-13		0.0239	[0.017-0.03] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1131	chr16	71634810	71634811	rs4788815	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q22.2	TAT	rs4788815-A	0.357	7E-11		0.026241	[0.018-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1131	chr16	71634810	71634811	rs4788815	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	16q22.2	TAT	rs4788815-?	0.35	4E-13				Illumina [~ 2000000] (imputed)	N
1131	chr16	71634810	71634811	rs4788815	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	16q22.2	TAT	rs4788815-?	NR	2E-17	(Phe, Tyr)	0.15	[0.11-0.19] unit increase	Illumina [~ 7700000] (imputed)	N
1131	chr16	71635835	71635836	rs11641811	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q22.2	RP11-432I5.2	rs11641811-C	0.476408	3E-9		0.03349356	[0.022-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
1131	chr16	71635835	71635836	rs11641811	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q22.2		rs11641811-A	0.5218	6E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1131	chr16	71635835	71635836	rs11641811	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q22.2	TAT, MARVELD3	rs11641811-C	0.4861	1E-15		1.0287007		Affymetrix [11880941] (imputed)	N
1131	chr16	71635835	71635836	rs11641811	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q22.2	TAT, MARVELD3	rs11641811-A	0.5139	1E-15		0.0135583	[0.01-0.017] unit decrease	Affymetrix [11880941] (imputed)	N
1131	chr16	71639052	71639053	rs9929977	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q22.2	MARVELD3	rs9929977-T	0.630156	1E-14		0.0167251	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1131	chr16	71640206	71640207	rs71403859	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	Intergenic	rs71403859-T	0.935	3E-6	(AA)	0.154	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71640229	71640230	rs34381861	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	Intergenic	rs34381861-C	0.935	4E-6	(AA)	0.152	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71643415	71643415	rs144293483	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16q22.2	NR	rs144293483-AC	0.10968900000000004	6E-10		0.0130803	[0.0086-0.0176] unit increase	Affymetrix [16585854] (imputed)	N
1131	chr16	71643415	71643415	rs144293483	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16q22.2	NR	rs144293483-AC	0.10968900000000004	1E-8		0.0135027	[0.0083-0.0187] unit increase	Affymetrix [16585866] (imputed)	N
1131	chr16	71643668	71643669	rs62053077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q22.2	MARVELD3	rs62053077-T	0.4289	7E-13		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1131	chr16	71643668	71643669	rs62053077	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q22.2	MARVELD3	rs62053077-T	0.3725	2E-12		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1131	chr16	71645262	71645263	rs12927768	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	Intergenic	rs12927768-A	0.936	2E-6	(AA)	0.156	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71645822	71645822	rs11397301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q22.2		rs11397301-CA	NR	4E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1131	chr16	71653463	71653464	rs12923781	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	Intergenic	rs12923781-A	0.936	3E-6	(AA)	0.154	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71653636	71653637	rs2334880	22895189	Timmann C	2012-08-15	Nature	Genome-wide association study indicates two novel resistance loci for severe malaria.	Malaria	1,325 African ancestry, 828 African ancestry controls	2,229 African ancestry cases, 3,526 African ancestry controls	16q22.2	MARVELD3	rs2334880-C	0.45	2E-6		1.19	[NR]	Affymetrix [4205739] (imputed)	N
1131	chr16	71654364	71654365	rs62053102	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.2	MARVELD3	rs62053102-A	0.9562	2E-18		0.456	[0.35-0.56] mmHg decrease	Affymetrix [NR] (imputed)	N
1131	chr16	71654364	71654365	rs62053102	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16q22.2	RP11-432I5.2	rs62053102-A	0.9549	4E-34		0.5352	[0.45-0.62] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1131	chr16	71663531	71663532	rs62053104	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs62053104-T	NR	1E-9		0.0319	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1131	chr16	71663703	71663704	rs17354693	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial tyrosine	4,348 individuals	NA	16q22.2		rs17354693-G	0.151155003	9E-11		0.195809	[0.14-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
1131	chr16	71663703	71663704	rs17354693	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting tyrosine	4,734 individuals	NA	16q22.2		rs17354693-G	0.150875343	5E-15		0.226305	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
1131	chr16	71664224	71664225	rs12935422	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	MARVELD3	rs12935422-A	0.935	3E-6	(AA)	0.151	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71677974	71677975	rs35538253	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs35538253-T	0.937	2E-6	(AA)	0.158	NR unit increase	Illumina [NR] (imputed)	N
1131	chr16	71685343	71685344	rs117512594	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs117512594-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1131	chr16	71691328	71691329	rs12051443	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	16q22.2	PHLPP2	rs12051443-A	0.34	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
1132	chr16	71705907	71705908	rs12924650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs12924650-T	NR	5E-14		0.026	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1132	chr16	71705907	71705908	rs12924650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs12924650-T	0.937	2E-6	(AA)	0.158	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71715130	71715131	rs12447672	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs12447672-A	0.939	2E-6	(AA)	0.164	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71716523	71716524	rs7186890	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.2	PHLPP2	rs7186890-?	NR	2E-22	(Tyr)	0.094360344	NR unit increase	Illumina [609262]	N
1132	chr16	71716523	71716524	rs7186890	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q22.2	PHLPP2	rs7186890-?	NR	1E-14	(Tyr)	0.09640314	NR unit increase	Illumina [609262]	N
1132	chr16	71717213	71717214	rs17355804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs17355804-G	0.929	2E-6	(AA)	0.152	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71720920	71720921	rs12149264	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs12149264-G	0.936	3E-6	(AA)	0.156	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71723180	71723181	rs78064607	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative acute renal failure after cardiac surgery	52 cases, 1,020 controls	NA	16q22.2	PHLPP2	rs78064607-?	NR	4E-8	(adjusted for atrial fibrillation, delirium, myocardial infarction and stroke)	50.0	[11.11-100]	Illumina [9007469] (imputed)	N
1132	chr16	71736358	71736359	rs17356206	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	PHLPP2	rs17356206-C	0.939	2E-6	(AA)	0.162	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71779309	71779310	rs74980679	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16q22.2	NR	rs74980679-T	0.144	1E-13		0.0140935	[0.01-0.018] unit increase	NR [~ 9732723] (imputed)	N
1132	chr16	71787587	71787588	rs12920890	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	AP1G1	rs12920890-A	0.938	2E-6	(AA)	0.158	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71799758	71799759	rs11642529	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16q22.2	NR	rs11642529-C	0.149	7E-10		0.015019847	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1132	chr16	71800044	71800045	rs12928939	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	AP1G1	rs12928939-G	0.107	4E-6	(AA)	0.118	NR unit decrease	Illumina [NR] (imputed)	N
1132	chr16	71801945	71801946	rs12149533	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	AP1G1	rs12149533-T	0.939	3E-6	(AA)	0.158	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71821799	71821800	rs71386933	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	AP1G1	rs71386933-T	0.937	1E-6	(AA)	0.164	NR unit increase	Illumina [NR] (imputed)	N
1132	chr16	71826024	71826025	rs76095103	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs76095103-C	NR	1E-28		0.0605	[0.05-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr16	71826024	71826025	rs76095103	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs76095103-C	NR	8E-24		0.0549	[0.044-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1132	chr16	71826024	71826025	rs76095103	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs76095103-C	NR	1E-18		0.0483	[0.038-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71827791	71827792	rs11861285	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q22.2	AP1G1	rs11861285-?		7E-6				Illumina [4322238] (imputed)	N
1133	chr16	71834560	71834561	rs138696382	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q22.2	NR	rs138696382-?	NR	6E-11				Illumina [7760689] (imputed)	N
1133	chr16	71835236	71835237	rs11307473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q22.2		rs11307473-T	NR	4E-11		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1133	chr16	71841256	71841257	rs12444156	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.2	AP1G1	rs12444156-T	0.938	4E-6	(AA)	0.156	NR unit increase	Illumina [NR] (imputed)	N
1133	chr16	71845151	71845152	rs35063109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q22.2	Intergenic	rs35063109-A	0.0404	2E-8	(MTAG)	0.0236	[0.015-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1133	chr16	71847304	71847305	rs117906172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs117906172-G	NR	3E-9		0.0405	[0.027-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71852832	71852833	rs62056490	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.2	AP1G1	rs62056490-A	NR	2E-8		5.625	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1133	chr16	71853712	71853713	rs8055797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q22.2		rs8055797-C	NR	3E-8		0.0141	[0.009-0.0192] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1133	chr16	71856726	71856727	rs4788446	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q22.2	AP1G1	rs4788446-T	0.252876	1E-12		0.0154918	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1133	chr16	71860007	71860008	rs9927049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.2		rs9927049-A	0.7453	9E-10		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1133	chr16	71860007	71860008	rs9927049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.2	Intergenic	rs9927049-A	0.7453	5E-8	(MTAG)	0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1133	chr16	71863481	71863482	rs28594331	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q22.2	NR	rs28594331-?	NR	3E-6		0.0435	[0.025-0.062] unit decrease	Illumina [at least 560000] (imputed)	N
1133	chr16	71870699	71870700	rs8051038	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	16q22.2	NR	rs8051038-A	NR	2E-9		6.016	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1133	chr16	71881639	71881640	rs76702063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs76702063-T	NR	4E-12		0.0284	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71881639	71881640	rs76702063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs76702063-T	NR	9E-11		0.0265	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr16	71881639	71881640	rs76702063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs76702063-T	NR	9E-14		0.0306	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71881639	71881640	rs76702063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs76702063-T	NR	9E-11		0.0266	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71885422	71885423	rs61747555	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	16q22.2	NR	rs61747555-G	0.22	3E-8		0.0146363	[0.0094-0.0198] unit decrease	NR [9732723] (imputed)	N
1133	chr16	71885422	71885423	rs61747555	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q22.2	NR	rs61747555-A	NR	9E-6		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1133	chr16	71891965	71891966	rs8063657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q22.2	IST1, ATXN1L	rs8063657-G	0.274417	1E-16		0.020769231	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1133	chr16	71891965	71891966	rs8063657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q22.2	IST1, ATXN1L	rs8063657-G	0.274427	5E-19		0.022359272	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1133	chr16	71891965	71891966	rs8063657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q22.2	IST1, ATXN1L	rs8063657-G	0.274392	4E-15		0.019619642	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1133	chr16	71891965	71891966	rs8063657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q22.2	IST1, ATXN1L	rs8063657-G	0.274406	4E-17		0.02108373	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1133	chr16	71914193	71914194	rs117706747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs117706747-C	NR	4E-18		0.0772	[0.06-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71914193	71914194	rs117706747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs117706747-C	NR	2E-20		0.0825	[0.065-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71914193	71914194	rs117706747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs117706747-C	NR	2E-17		0.0757	[0.058-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
1133	chr16	71920143	71920144	rs4788570	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q22.2	IST1	rs4788570-A	NR	4E-8		0.01857549	[0.012-0.025] unit increase	Affymetrix [NR]	N
1133	chr16	71932436	71932437	rs113522753	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16q22.2	NR	rs113522753-A	0.9824514	4E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1133	chr16	71952320	71952321	rs71695136	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q22.2	NR	rs71695136-C	0.7841	7E-7	(EA)	0.0427	[0.026-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
1133	chr16	71955084	71955085	rs72801786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs72801786-T	NR	7E-10		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr16	71956534	71956535	rs62639219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs62639219-C	NR	1E-10		0.0526	[0.037-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr16	71956534	71956535	rs62639219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs62639219-C	NR	3E-12		0.0572	[0.041-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr16	71956534	71956535	rs62639219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs62639219-C	NR	1E-12		0.0582	[0.042-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr16	71956595	71956596	rs2335708	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q22.2	IST1	rs2335708-A	0.682401	1E-17		0.0197829	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1134	chr16	71965195	71965196	rs16973500	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	16q22.2	PKD1L3, IST1, ATXN1L	rs16973500-T	0.38	9E-6	(GEE model, both 3 and 6 months)	0.24	[0.13, 0.34] unit increase	Illumina [4253138] (imputed)	N
1134	chr16	71965195	71965196	rs16973500	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q22.2	PKD1L3, KIAA0174, DHODH	rs16973500-C	0.86	7E-6				Perlegen [378332]	N
1134	chr16	71968700	71968701	rs17286411	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	IST1, PKD1L3	rs17286411-G	0.3820281	5E-22	(Haptoglobin)	0.4404	[0.35-0.53] unit decrease	Affymetrix [509946]	N
1134	chr16	71969944	71969945	rs10852506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q22.2		rs10852506-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1134	chr16	71978590	71978591	rs71384782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q22.2		rs71384782-G	NR	3E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1134	chr16	71983928	71983929	rs35377660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q22.2	PKD1L3	rs35377660-T	0.261984	5E-12		0.017539585	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1134	chr16	71988105	71988106	rs9921412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q22.2	Intergenic	rs9921412-T	0.735	5E-9		0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1134	chr16	71988105	71988106	rs9921412	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.2	PKD1L3	rs9921412-T	NR	1E-11		6.789	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1134	chr16	71993385	71993386	rs4788584	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q22.2	NR	rs4788584-A	0.267396	7E-9		0.04111733	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1134	chr16	71994931	71994932	rs12926804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs12926804-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1134	chr16	71995979	71995980	rs2008675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q22.2		rs2008675-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1134	chr16	71997788	71997789	rs8053891	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	16q22.2	PKD1L3	rs8053891-C	0.261225	1E-7		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
1134	chr16	71997788	71997789	rs8053891	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q22.2	PKD1L3	rs8053891-A	0.736	3E-6		0.03	[0.018-0.042] unit decrease	Affymetrix [7947838] (imputed)	N
1134	chr16	71998403	71998404	rs28370955	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1777 sp900319835 abundance in stool	5,959 Finnish ancestry individuals	NA	16q22.2		rs28370955-A	0.406688	3E-8		0.0332986	[0.022-0.045] unit decrease	Illumina [7980478] (imputed)	N
1134	chr16	72001520	72001521	rs117844066	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	16q22.2	HPR	rs117844066-?	NR	3E-18		1.692	[1.23-2.15] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1134	chr16	72006369	72006370	rs9922596	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16q22.2	DHODH	rs9922596-T	0.2207	2E-10		0.018131934	[0.013-0.024] unit decrease	Affymetrix [11515109] (imputed)	N
1134	chr16	72009675	72009676	rs12931964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs12931964-G	NR	2E-25		0.0339	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr16	72009675	72009676	rs12931964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.2	NR	rs12931964-G	NR	3E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr16	72009675	72009676	rs12931964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs12931964-G	NR	2E-28		0.036	[0.03-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr16	72009675	72009676	rs12931964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs12931964-G	NR	3E-26		0.0346	[0.028-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr16	72012771	72012772	rs1122531	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	16q22.2	PKD1L3	rs1122531-T	0.71	1E-13	(BMI unadjusted)	0.081	[0.059-0.103] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1134	chr16	72013369	72013370	rs4788588	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q22.2	NR	rs4788588-?	NR	7E-7		0.0509	[0.031-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
1134	chr16	72013796	72013797	rs7185272	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total cholesterol levels	12,685 Chinese ancestry individuals	NA	16q22.2	PKD1L3	rs7185272-C	0.0074	3E-7		0.07	[0.05-0.09] unit increase	Illumina [286795]	N
1134	chr16	72013796	72013797	rs7185272	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	LDL cholesterol levels	12,685 Chinese ancestry individuals	NA	16q22.2	PKD1L3	rs7185272-C	0.74	5E-8		0.08	[0.06-0.1] unit increase	Illumina [286795]	N
1134	chr16	72014781	72014782	rs7192750	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	16q22.2	PKD1L3	rs7192750-T	0.28	6E-13	(Asian initial, BMI unadjusted)	0.068	[0.05-0.086] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
1134	chr16	72014781	72014782	rs7192750	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	16q22.2	PKD1L3	rs7192750-T	0.29	1E-14	(BMI unadjusted)	0.084	[0.062-0.106] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1134	chr16	72015250	72015251	rs8051431	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	16q22.2	PKD1L3	rs8051431-C	0.71	4E-15	(Asian initial, BMI unadjusted)	0.075	[0.057-0.093] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1134	chr16	72022453	72022454	rs12600121	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q22.2	PKD1L3	rs12600121-C	NR	5E-10		0.018357232	[0.013-0.024] unit decrease	Affymetrix [NR]	N
1134	chr16	72022533	72022534	rs12600132	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16q22.2	PKD1L3	rs12600132-T	0.432	6E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1134	chr16	72022964	72022965	rs4788593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.2	Intergenic	rs4788593-C	0.5241	6E-12	(MTAG)	0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1134	chr16	72025076	72025077	rs12927205	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	16q22.2	HPR	rs12927205-A	0.74	8E-7		1.462	[0.86-2.07] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1134	chr16	72025076	72025077	rs12927205	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	16q22.2	HPR	rs12927205-A	0.74	7E-7		1.784	[1.07-2.49] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1134	chr16	72026121	72026122	rs117255975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q22.2		rs117255975-G	NR	4E-9		0.0658	[0.044-0.088] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1134	chr16	72027610	72027611	rs17664900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs17664900-A	NR	2E-23		0.0389	[0.031-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72027610	72027611	rs17664900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs17664900-A	NR	1E-25		0.041	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1134	chr16	72027610	72027611	rs17664900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs17664900-A	NR	6E-28		0.0428	[0.035-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72027610	72027611	rs17664900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs17664900-A	NR	1E-19		0.0355	[0.028-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72028078	72028079	rs79217285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs79217285-T	NR	2E-9		0.0453	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72030579	72030580	rs9938539	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.2		rs9938539-T	0.642511	3E-35		0.0539391	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
1134	chr16	72030969	72030970	rs12597458	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	16q22.2	PKD1L3	rs12597458-G	0.56	1E-7		1.11	[1.06-1.15]	Illumina [1531807] (imputed)	N
1134	chr16	72032230	72032231	rs16973585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs16973585-A	NR	4E-15		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72032230	72032231	rs16973585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs16973585-A	NR	6E-17		0.0214	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72032230	72032231	rs16973585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs16973585-A	NR	8E-18		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr16	72032729	72032730	rs1035560	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		16q22.2	PKD1L3	rs1035560-?	NR	1E-8		0.0058	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1134	chr16	72032729	72032730	rs1035560	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	16q22.2	PKD1L3	rs1035560-C	0.4	3E-12		0.0064	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1134	chr16	72032953	72032954	rs11864188	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	16q22.2	NR	rs11864188-T	0.3225	5E-10		0.016456155	[0.011-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1134	chr16	72034652	72034653	rs12599952	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs12599952-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1134	chr16	72034652	72034653	rs12599952	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	16q22.2	DHODH	rs12599952-A	0.3217	7E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1134	chr16	72034652	72034653	rs12599952	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	16q22.2	PKD1L3	rs12599952-A	0.32	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1134	chr16	72036176	72036176	rs11378439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q22.2		rs11378439-T	0.483176	4E-9		0.0234557	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1134	chr16	72040031	72040032	rs9929256	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	16q22.2	ATP5A1	rs9929256-?	NR	4E-6				Affymetrix [753382]	N
1134	chr16	72042824	72042825	rs3213423	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Haptoglobin plasma levels	400 French ancestry individuals	NA	16q22.2		rs3213423-G	NR	1E-6		0.266	[0.17-0.36] mg/mL increase	Illumina [5201092] (imputed)	N
1134	chr16	72047750	72047751	rs8046916	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	16q22.2	DHODH	rs8046916-?	NR	2E-6				Affymetrix [753382]	N
1134	chr16	72048631	72048632	rs8062895	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	16q22.2	NR	rs8062895-?	NR	3E-6		0.068	[0.041-0.095] unit decrease	Illumina [1770809] (imputed)	N
1134	chr16	72049211	72049212	rs7184117	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	16q22.2	DHODH	rs7184117-?		6E-6	(African American)	0.12157466	[0.069-0.174] unit decrease	Illumina [13620258] (imputed)	N
1134	chr16	72050479	72050480	rs11864453	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		16q22.2	DHODH	rs11864453-?	NR	5E-8		0.0057	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1134	chr16	72052007	72052008	rs34273235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q22.2		rs34273235-C	0.321624133	4E-9		0.12240005	[0.082-0.163] unit increase	Illumina [13425416] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16q22.2	HPR	rs11648003-?	NR	3E-18		1.835	[1.42-2.25] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q22.2	NR	rs11648003-?	NR	3E-6		2.199004	[1.28-3.12] unit increase	Illumina [32003504] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	16q22.2	NR	rs11648003-?	NR	4E-6		1.930894	[1.11-2.75] unit increase	Illumina [31808917] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs11648003-A	NR	8E-38		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs11648003-A	0.77	2E-30	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs11648003-A	NR	1E-36		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs11648003-A	0.77	2E-29	(EA)	0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	16q22.2	HP, HPR, DHX38	rs11648003-G	0.22	2E-20		0.067	[0.053-0.081] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1134	chr16	72052347	72052348	rs11648003	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	16q22.2	HP, HPR, DHX38	rs11648003-G	0.22	3E-23		0.07	[0.056-0.084] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1134	chr16	72055335	72055336	rs56387295	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16q22.2	NR	rs56387295-A	0.1373	7E-10		0.01855728	[0.013-0.024] unit increase	Affymetrix [10613246] (imputed)	N
1134	chr16	72057281	72057282	rs2288002	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	16q22.2		rs2288002-A	0.4439	5E-6		0.7054	[0.4-1.01] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1134	chr16	72060114	72060115	rs181729714	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16q22.2	Intergenic	rs181729714-T	NR	3E-6		2.79748	[1.62-3.98] unit increase	Illumina [13520550] (imputed)	N
1134	chr16	72074317	72074318	rs12934018	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.2		rs12934018-C	0.730738	2E-10		0.0277072	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1134	chr16	72074317	72074318	rs12934018	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q22.2		rs12934018-C	0.730745	2E-8		0.0239909	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1134	chr16	72075592	72075593	rs12924886	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs12924886-T	0.146	6E-159		0.686485	[0.64-0.74] unit decrease	Illumina [7506463] (imputed)	N
1134	chr16	72075592	72075593	rs12924886	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs12924886-T	0.146	6E-156		0.680985	[0.63-0.73] unit decrease	Illumina [7506463] (imputed)	N
1134	chr16	72075592	72075593	rs12924886	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	16q22.2	HP	rs12924886-A	0.8	1E-8		0.2798	[0.18-0.38] years increase	NR [up to 9000000] (imputed)	N
1134	chr16	72078042	72078043	rs763665	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16q22.2		rs763665-C	0.840185	3E-14		0.0430659	[0.032-0.054] unit increase	NR [11722792] (imputed)	N
1134	chr16	72078042	72078043	rs763665	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	TXNL4B	rs763665-T	0.164	7E-82	(Apolipoprotein L1, APOL1.11510.31.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1134	chr16	72078906	72078907	rs1424241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16q22.2		rs1424241-A	NR	3E-17		0.0226	[0.017-0.028] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1134	chr16	72078906	72078907	rs1424241	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	16q22.2	NR	rs1424241-?		6E-19	(HP)	0.4348	[NR] unit increase	Illumina [NR]	N
1134	chr16	72078989	72078990	rs35283911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	16q22.2		rs35283911-T	NR	6E-71		0.0465	[0.041-0.052] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	3E-10		0.0313018	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	9E-11		0.0328948	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807317	2E-8		0.0278562	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	8E-9		0.0290031	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	4E-12		0.0350301	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807317	7E-9		0.0286357	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807317	4E-13		0.0355091	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	5E-221		0.164358	[0.15-0.17] unit decrease	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	5E-10		0.0315131	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	3E-9		0.0307302	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	6E-9		0.0294527	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs77303550-C	0.807295	3E-9		0.0301521	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	16q22.2		rs77303550-T	0.2098	5E-39		0.0583304	[0.05-0.067] unit decrease	Illumina [13476599] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q22.2		rs77303550-T	NR	2E-18		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16q22.2		rs77303550-T	NR	6E-36		0.0761	[0.064-0.088] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	16q22.2		rs77303550-T	0.210958213	7E-27		0.124315515	[0.1-0.15] unit decrease	Illumina [13429980] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	16q22.2		rs77303550-T	0.208157	5E-21		0.0564843	[0.045-0.068] unit decrease	Illumina [13461863] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q22.2		rs77303550-T	NR	2E-16		0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q22.2	DHODH, HP	rs77303550-?		1E-36		0.0574	[0.049-0.066] unit increase	Illumina [31500000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q22.2	TXNL4B	rs77303550-T	0.192466	2E-24		0.02936822	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q22.2	TXNL4B	rs77303550-T	0.192498	2E-19		0.02609735	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.2	NR	rs77303550-T	0.196744	4E-25				Affymetrix, Illumina [24332387] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q22.2	NR	rs77303550-T	0.192119	1E-23		0.023538	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	16q22.2	intergenic	rs77303550-T	0.182	2E-7		0.03	[0.02-0.04] unit increase	Illumina [NR] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q22.2	TXNL4B	rs77303550-T	0.258	1E-8		0.0333	[0.022-0.045] unit decrease	Affymetrix [at least 805769] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q22.2		rs77303550-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	8E-184	(HP, 3054_3_2)	0.87787396	[0.82-0.93] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	7E-11	(SPARCL1, 4467_49_2)	0.20388205	[0.14-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	5E-27	(APOL1, 11510_51_3)	0.3266747	[0.27-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	4E-12	(FTH1 FTL, 3031_66_1)	0.21606715	[0.16-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	2E-29	(APOL1, 11510_31_3)	0.3421896	[0.28-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	1E-31	(SERPIND1, 3316_58_1)	0.36422965	[0.3-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q22.2	NR	rs77303550-C	0.81828125	1E-159	(HP, 7905_30_3)	0.8253297	[0.77-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	TXNL4B	rs77303550-T	0.196	1E-11	(SPARC-like protein 1, SPARCL1.4467.49.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	16q22.2	DHODH, HP	rs77303550-?	NR	3E-31		0.06067	[0.05-0.071] unit decrease novel	Illumina [6108953] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	16q22.2	DHODH, HP	rs77303550-?	NR	7E-16		0.05635	[0.043-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
1134	chr16	72079656	72079657	rs77303550	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16q22.2	HP	rs77303550-T	0.19	4E-30	(Glycoprotein acetyls)	0.15	[0.13-0.17] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1134	chr16	72088279	72088280	rs5467	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q22.2	DHODH, HP	rs5467-C	0.7852	2E-15		1.0331646		Affymetrix [11880941] (imputed)	N
1134	chr16	72088460	72088461	rs5471	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.2	intergenic	rs5471-A	0.9039	1E-70		0.1961	[0.17-0.22] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1134	chr16	72088460	72088461	rs5471	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.2	intergenic	rs5471-A	0.9039	5E-57		0.1756	[0.15-0.2] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1134	chr16	72088460	72088461	rs5471	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q22.2	intergenic	rs5471-A	0.9039	2E-11		0.0743	[0.053-0.096] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1135	chr16	72095649	72095650	rs75444904	29572449	Gurung RL	2018-03-23	Sci Rep	Genetic markers for urine haptoglobin is associated with decline in renal function in type 2 diabetes in East Asians.	Urinary haptoglobin levels in type 2 diabetes	236 Chinese ancestry individuals	512 Chinese ancestry individuals, 57 Malay ancestry individuals	16q22.2	HP	rs75444904-C	0.275	1E-60		0.777	[0.68-0.87] unit increase	Illumina [781779]	N
1135	chr16	72095649	72095650	rs75444904	29572449	Gurung RL	2018-03-23	Sci Rep	Genetic markers for urine haptoglobin is associated with decline in renal function in type 2 diabetes in East Asians.	Plasma haptoglobin levels in type 2 diabetes	236 Chinese ancestry individuals	57 Malay ancestry individuals	16q22.2	HP	rs75444904-C	0.307	7E-12		0.567	[0.40-0.73] unit increase	Illumina [781779]	N
1135	chr16	72096226	72096227	rs34682685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34682685-G	0.896559	5E-9		0.0381773	[0.025-0.051] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72096226	72096227	rs34682685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	16q22.2		rs34682685-G	0.896559	5E-9		0.038447	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72096226	72096227	rs34682685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34682685-G	0.896559	5E-11		0.0444449	[0.031-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72096226	72096227	rs34682685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34682685-G	0.896559	2E-8		0.0354782	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs3794695-C	0.810986	1E-17		0.0451069	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs3794695-C	0.810986	2E-18		0.0459845	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs3794695-C	0.810986	3E-12		0.036807	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs3794695-C	0.810986	3E-16		0.0431802	[0.033-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q22.2		rs3794695-T	NR	6E-9		0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q22.2	HPR	rs3794695-?		6E-24		0.046	[0.037-0.055] unit decrease	Illumina [31500000] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q22.2	TXNL4B	rs3794695-C	0.810003	1E-27		0.0277108	[0.023-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	16q22.2	HPR	rs3794695-?	NR	2E-17		1.721	[1.3-2.14] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	2E-11				Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	1E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	4E-7		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	1E-6	(EA)	0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	8E-54				Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	3E-43	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	3E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q22.2	HPR	rs3794695-T	NR	1E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	2E-59				Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	2E-45	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	2E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q22.2	HPR	rs3794695-T	NR	1E-6	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	6E-32		1.94	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	4E-9	(Asian)	1.605	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	3E-6	(Hispanic)	2.885	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	2E-23	(EA)	2.192	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	7E-24		1.874	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	4E-11	(EA)	1.943	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72097826	72097827	rs3794695	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q22.2	HPR	rs3794695-T	NR	2E-12	(Asian)	1.831	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-13		0.0381241	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	9E-12		0.0355359	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-12		0.0365796	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	3E-19		0.0476163	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	7E-18		0.0458758	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	5E-15		0.0408578	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-14		0.0405592	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	3E-16		0.0434014	[0.033-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	3E-14		0.0394971	[0.029-0.05] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-11		0.0339206	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	8E-16		0.0426102	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-12		0.0357106	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	6E-15		0.0411867	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	8E-14		0.0390331	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-19		0.0477673	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-19		0.0474072	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-19		0.0480761	[0.038-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-16		0.0437806	[0.033-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-12		0.0376479	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	6E-15		0.0414131	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	9E-16		0.0425805	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	9E-19		0.0469697	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-12		0.037223	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	3E-19		0.0475696	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	8E-13		0.0380449	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	9E-11		0.0338453	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-11		0.0356378	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-18		0.046898	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	7E-20		0.0483814	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	6E-18		0.0460362	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	5E-18		0.0459043	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-18		0.0457566	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	6E-19		0.0472776	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	3E-13		0.0385089	[0.028-0.049] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-17		0.0450674	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-18		0.0470036	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-18		0.0470484	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	2E-15		0.0417416	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-17		0.0446289	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-18		0.0461217	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-17		0.0455876	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	6E-17		0.044401	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-17		0.0455034	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	4E-14		0.0398327	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	16q22.2		rs34042070-C	0.813022	1E-17		0.0454725	[0.035-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q22.2		rs34042070-G	NR	9E-85		0.0452	[0.041-0.05] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	16q22.2		rs34042070-G	0.2	5E-17		1.15		Affymetrix [15679186] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		16q22.2	TXNL4B, HP, HPR	rs34042070-C	NR	2E-15		0.01573	[0.011-0.021] nmol/l decrease	NR [19000000] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16q22.2	HPR	rs34042070-?	NR	9E-13		0.0407425	[0.03-0.052] unit increase	Illumina [4804024] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16q22.2	NR	rs34042070-C	0.812364	1E-177		0.0700152	[0.065-0.075] unit decrease	Affymetrix [15000001]	N
1135	chr16	72101524	72101525	rs34042070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q22.2	TXNL4B	rs34042070-C	0.81207	2E-73		0.0485842	[0.043-0.054] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q22.2	TXNL4B	rs34042070-C	0.812093	1E-76		0.0495027	[0.044-0.055] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q22.2	HPR, TXNL4B	rs34042070-?	NR	5E-105		0.0719	[0.066-0.078] unit increase	Affymetrix [5701386] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	16q22.2	NR	rs34042070-C	0.8018	1E-37				Affymetrix, Illumina [at least 2500000] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q22.2		rs34042070-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1135	chr16	72101524	72101525	rs34042070	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	NR	rs34042070-G	0.19	3E-137	(Haptoglobin, HP.3054.3.2)	0.73	[0.67-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
1135	chr16	72105964	72105965	rs217184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTH1;FTL	5,362 Icelandic ancestry individuals	NA	16q22.2		rs217184-C	0.1825	3E-15		0.187842	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72105964	72105965	rs217184	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,361 Icelandic ancestry individuals	NA	16q22.2		rs217184-C	0.1825	4E-41		0.307796	[0.26-0.35] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72105964	72105965	rs217184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q22.2		rs217184-C	NR	1E-13		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1135	chr16	72105964	72105965	rs217184	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	16q22.2	HPR	rs217184-?	NR	2E-21		0.0029	[0.0021-0.0037] unit decrease	Affymetrix [21347608] (imputed)	N
1135	chr16	72105964	72105965	rs217184	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	16q22.2	HPR	rs217184-?	NR	3E-20		0.0046	[0.0034-0.0058] unit decrease	Affymetrix [21347608] (imputed)	N
1135	chr16	72105964	72105965	rs217184	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q22.2	HPR	rs217184-T	0.807413	1E-22		0.00473339	[0.0038-0.0057] unit increase	Affymetrix [13995440] (imputed)	N
1135	chr16	72105964	72105965	rs217184	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q22.2	HPR	rs217184-T	0.81	7E-17		8.35	z-score increase	Affymetrix [4314223] (imputed)	N
1135	chr16	72105964	72105965	rs217184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q22.2	HPR, TXNL4B	rs217184-C	0.192802	1E-18		0.025356447	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr16	72105964	72105965	rs217184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.2	NR	rs217184-C	0.197186	6E-15				Affymetrix, Illumina [24558453] (imputed)	N
1135	chr16	72105964	72105965	rs217184	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	16q22.2	TXNL4B	rs217184-C	0.262	2E-9		4.103	[2.76-5.44] unit decrease	Affymetrix [at least 805769] (imputed)	N
1135	chr16	72105964	72105965	rs217184	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	HP	rs217184-C	0.196	1E-216	(Haptoglobin, HP.3054.3.2)	0.87	[0.81-0.93] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72105964	72105965	rs217184	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	HP	rs217184-C	0.196	1E-18	(Apolipoprotein L1, APOL1.11510.31.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-10		0.0325707	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-11		0.0345332	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	6E-13		0.0368136	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-10		0.032143	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-10		0.0325569	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-10		0.0323437	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	4E-11		0.0335256	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-17		0.0444412	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	5E-13		0.0367939	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	3E-15		0.0406585	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811397	4E-9		0.0305454	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811397	5E-8		0.0284117	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-12		0.03614	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-13		0.037556	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-17		0.0442326	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811397	9E-9		0.0298539	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	7E-14		0.0381546	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-14		0.0392489	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	1E-18		0.0460302	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	5E-12		0.0349146	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	6E-17		0.0433872	[0.033-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	2E-13		0.0372874	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	3E-13		0.0378104	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	3E-17		0.0439152	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	6E-14		0.0386371	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs2000999-G	0.811387	3E-16		0.0420686	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPIND1	5,362 Icelandic ancestry individuals	NA	16q22.2		rs2000999-A	0.1452	1E-43		0.358118	[0.31-0.41] unit decrease	Illumina [7506463] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	2E-21		0.0289	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	5E-103		0.0653	[0.059-0.071] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	7E-20		0.0289	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	7E-10		0.0196	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	3E-112		0.0683	[0.062-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-A	NR	9E-105		0.0661	[0.06-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	16q22.2	HPR	rs2000999-A	0.23	5E-10		1.06	[1.05-1.08]	Illumina [5167567] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.2	DHX38, PMFBP1, HP	rs2000999-A		7E-9		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16q22.2	HPR, TXNL4B	rs2000999-?	NR	4E-16		0.0272	[0.021-0.033] unit increase	Affymetrix [5701386] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	16q22.2	NR	rs2000999-?	NR	6E-6		1.885057	[1.07-2.7] unit increase	Illumina [31808917] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	16q22.2		rs2000999-A	0.204	6E-16		1.6361	[1.24-2.03] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-G	NR	5E-38		0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-G	0.801	2E-30	(EA)	0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-G	NR	3E-37		0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q22.2	NR	rs2000999-G	0.801	8E-30	(EA)	0.067	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	16q22.2	NR	rs2000999-?	NR	3E-15	(Haptoglobin mixed)	0.49	[0.37-0.61] unit decrease	Illumina [4020654] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	16q22.2	HPR	rs2000999-A	0.266	2E-6	(Asian initial, BMI unadjusted)	0.051	[0.03-0.072] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	16q22.2	HPR	rs2000999-A	0.185	2E-44	(Trans-ethnic initial)	0.0617	[0.053-0.07] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	16q22.2	HPR	rs2000999-A	0.266	2E-6	(Asian initial, BMI unadjusted)	0.0518	[0.031-0.073] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	16q22.2	HPR	rs2000999-A	0.185	5E-45	(Trans-ethnic initial)	0.065	[0.056-0.074] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	16q22.2	HPR	rs2000999-A	0.1776	7E-9		0.082936555	[0.055-0.111] mg/dl increase	Illumina [24111857] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	HP, HPR, DHX38, TXNL4B, PMFBP1	rs2000999-A	0.187249	8E-17	(EA, Heparin cofactor 2)	0.4584	[0.35-0.56] unit decrease	Affymetrix [509946]	N
1135	chr16	72108092	72108093	rs2000999	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	HP, HPR, DHX38, TXNL4B, PMFBP1	rs2000999-A	0.187249	7E-45	(EA, Haptoglobin)	0.7575	[0.66-0.86] unit decrease	Affymetrix [509946]	N
1135	chr16	72108092	72108093	rs2000999	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	HP, HPR, DHX38, TXNL4B, PMFBP1	rs2000999-A	0.187249	5E-12	(EA, Hemoglobin)	0.3691	[0.27-0.47] unit increase	Affymetrix [509946]	N
1135	chr16	72108092	72108093	rs2000999	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.2	HPR	rs2000999-A	0.20	4E-41		0.065	[NR] unit increase	NR [NR] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	16q22.2	HPR	rs2000999-A	0.2	7E-41		0.062	[NR] unit increase	NR [NR] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	22403646	Froguel P	2012-03-05	PLoS One	A genome-wide association study identifies rs2000999 as a strong genetic determinant of circulating haptoglobin levels.	Haptoglobin levels	631 European ancestry children	2,957 European ancestry family members, 1,434 European ancestry individuals	16q22.2	HP	rs2000999-A	NR	8E-59		0.138	[0.12-0.15] g/L decrease SFS family cohort	Illumina [318237]	N
1135	chr16	72108092	72108093	rs2000999	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	16q22.2	HPR, HP, DHX38	rs2000999-A	0.2	2E-22		2.0	[1.57-2.43] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1135	chr16	72108092	72108093	rs2000999	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	16q22.2	HPR, HP, DHX38	rs2000999-A	0.2	3E-24		2.34	[1.87-2.81] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1135	chr16	72110322	72110323	rs146254843	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q22.2	TXNL4B	rs146254843-T	0.0214145	2E-8		0.1079488	[0.07-0.146] unit decrease	Affymetrix [7288503] (imputed)	N
1135	chr16	72112479	72112480	rs55741258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q22.2		rs55741258-T	NR	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1135	chr16	72113913	72113914	rs117596524	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs117596524-T	NR	5E-9		0.0346	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q22.2		rs217181-C	0.806225	7E-10		0.03215	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARCL1	5,366 Icelandic ancestry individuals	NA	16q22.2		rs217181-T	0.1824	6E-23		0.235521	[0.19-0.28] unit decrease	Illumina [7506463] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPIND1	5,362 Icelandic ancestry individuals	NA	16q22.2		rs217181-T	0.1824	5E-58		0.376824	[0.33-0.42] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs217181-T	0.1824	5E-300		0.824365	[0.78-0.87] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,366 Icelandic ancestry individuals	NA	16q22.2		rs217181-T	0.1824	1E-47		0.333944	[0.29-0.38] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72114001	72114002	rs217181	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA1	5,359 Icelandic ancestry individuals	NA	16q22.2		rs217181-T	0.1824	6E-8		0.129067	[0.082-0.176] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72114001	72114002	rs217181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q22.2		rs217181-T	NR	6E-13		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1135	chr16	72114001	72114002	rs217181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.2	NR	rs217181-T	0.205635	6E-19				Affymetrix, Illumina [24653286] (imputed)	N
1135	chr16	72114001	72114002	rs217181	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.2	HPR	rs217181-?	NR	9E-26	(Gp)	0.07510325	NR unit increase	Illumina [609262]	N
1135	chr16	72114001	72114002	rs217181	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q22.2	HPR	rs217181-?	NR	2E-11	(Gp)	0.083299406	NR unit increase	Illumina [609262]	N
1135	chr16	72114001	72114002	rs217181	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	TXNL4B	rs217181-T	0.196	7E-69	(Ferritin, FTH1.FTL.3031.66.1)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72114001	72114002	rs217181	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	TXNL4B, HPR, RP11-384M15.3	rs217181-T	0.1947791	4E-16	(EA, Ferritin)	0.4482	[0.34-0.55] unit increase	Affymetrix [509946]	N
1135	chr16	72114001	72114002	rs217181	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	TXNL4B, HPR, RP11-384M15.3	rs217181-T	0.1947791	3E-12	(EA, Heparin cofactor 2)	0.3857	[0.28-0.49] unit increase	Affymetrix [509946]	N
1135	chr16	72114001	72114002	rs217181	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	TXNL4B, HPR, RP11-384M15.3	rs217181-T	0.1947791	1E-75	(EA, Haptoglobin)	0.9578	[0.86-1.05] unit increase	Affymetrix [509946]	N
1135	chr16	72114001	72114002	rs217181	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	16q22.2	HPR, HP, DHX38	rs217181-?	0.18	1E-36				Illumina [~ 2000000] (imputed)	N
1135	chr16	72119421	72119422	rs117783250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs117783250-C	NR	1E-9		0.0528	[0.036-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72130814	72130815	rs1050362	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	16q22.2	DHX38, TXNL4B	rs1050362-A	0.3755	3E-11		0.0352	[0.025-0.046] unit increase	Affymetrix [at least 7947838] (imputed)	N
1135	chr16	72130814	72130815	rs1050362	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16q22.2	DHX38, TXNL4B	rs1050362-A	0.3781	3E-11		0.0386	[0.027-0.05] unit increase	NR [8041861] (imputed)	N
1135	chr16	72132128	72132129	rs11075921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,366 Icelandic ancestry individuals	NA	16q22.2		rs11075921-T	0.1848	2E-162		0.593423	[0.55-0.64] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72132128	72132129	rs11075921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,361 Icelandic ancestry individuals	NA	16q22.2		rs11075921-T	0.1848	6E-95		0.46101	[0.42-0.5] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72132128	72132129	rs11075921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA1	5,359 Icelandic ancestry individuals	NA	16q22.2		rs11075921-T	0.1848	5E-22		0.227174	[0.18-0.27] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72138111	72138112	rs12325142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	16q22.2		rs12325142-T	NR	7E-9		0.0468	[0.031-0.063] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1135	chr16	72140552	72140553	rs2287997	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q22.2	DHX38	rs2287997-A	0.18536	3E-19		0.06465331	[0.051-0.079] unit increase	Affymetrix [7288503] (imputed)	N
1135	chr16	72140552	72140553	rs2287997	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	16q22.2	DHX38	rs2287997-?	NR	1E-10	(Alpha-2 Globulin)			Illumina [up to 10879115] (imputed)	N
1135	chr16	72140936	72140937	rs142589036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.2		rs142589036-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1135	chr16	72141639	72141640	rs11554765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs11554765-T	NR	4E-9		0.0655	[0.044-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72143413	72143414	rs17666927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs17666927-A	NR	3E-26		0.0864	[0.07-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72143413	72143414	rs17666927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs17666927-A	NR	5E-10		0.0509	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72143413	72143414	rs17666927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs17666927-A	NR	1E-28		0.0907	[0.075-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72143413	72143414	rs17666927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs17666927-A	NR	1E-23		0.0822	[0.066-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1135	chr16	72143413	72143414	rs17666927	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q22.2	DHX38	rs17666927-A		2E-8		0.041	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817545	3E-11		0.0351385	[0.025-0.046] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	2E-17		0.0443982	[0.034-0.055] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817667	2E-25		0.0557342	[0.045-0.066] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	2E-8		0.0288703	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	3E-20		0.0481751	[0.038-0.058] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817667	1E-11		0.034967	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	3E-18		0.0454499	[0.035-0.056] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	5E-16		0.0425574	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	1E-13		0.0382485	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	2E-15		0.0419447	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9302635-T	0.817541	3E-15		0.0407674	[0.031-0.051] unit increase	NR [11722792] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARCL1	5,366 Icelandic ancestry individuals	NA	16q22.2		rs9302635-C	0.2053	8E-6		0.103066	[0.058-0.148] unit decrease	Illumina [7506463] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs9302635-C	0.2053	4E-259		0.7423	[0.7-0.78] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HP	5,368 Icelandic ancestry individuals	NA	16q22.2		rs9302635-C	0.2053	1E-217		0.690303	[0.65-0.73] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTH1;FTL	5,362 Icelandic ancestry individuals	NA	16q22.2		rs9302635-C	0.2053	8E-20		0.207583	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16q22.2		rs9302635-C	NR	2E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q22.2		rs9302635-C	NR	1E-69		0.0531	[0.047-0.059] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q22.2		rs9302635-C	NR	2E-12		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4 on monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q22.2		rs9302635-C	0.19843	3E-18		0.2953	[0.23-0.36] unit increase	Illumina [18030638] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q22.2	DHX38	rs9302635-C	0.182123	3E-25		0.030395245	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q22.2	DHX38	rs9302635-C	0.182092	7E-25		0.030305922	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q22.2	DHX38	rs9302635-C	0.182115	3E-20		0.027164046	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q22.2	NR	rs9302635-C	0.182574	3E-21		0.022642	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16q22.2	HPR	rs9302635-?	NR	5E-9		1.441	[0.99-1.89] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	16q22.2	HPR	rs9302635-?	NR	5E-11		1.495	[1.04-1.95] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.2	DHX38	rs9302635-?	NR	4E-10	(SFA)	0.031284653	NR unit decrease	Illumina [609262]	N
1135	chr16	72144173	72144174	rs9302635	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.2	DHX38	rs9302635-?	NR	1E-10	(TotFA)	0.032197066	NR unit decrease	Illumina [609262]	N
1135	chr16	72144173	72144174	rs9302635	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q22.2	DHX38	rs9302635-T	0.7626	2E-9		0.0275	[0.018-0.037] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	NR	rs9302635-C	0.181	6E-161	(Haptoglobin, HP.3054.3.2)	0.78	[0.72-0.84] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	NR	rs9302635-C	0.181	2E-53	(Ferritin, FTH1.FTL.3031.66.1)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72144173	72144174	rs9302635	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	DHX38, TXNL4B, PMFBP1	rs9302635-C	0.1765296	6E-54	(Haptoglobin)	0.8758	[0.77-0.98] unit increase	Affymetrix [509946]	N
1135	chr16	72144173	72144174	rs9302635	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	DHX38, TXNL4B, PMFBP1	rs9302635-C	0.1765296	3E-10	(Ferritin)	0.3717	[0.26-0.49] unit increase	Affymetrix [509946]	N
1135	chr16	72148403	72148404	rs6499561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	16q22.2		rs6499561-A	0.637901	2E-8		0.0237944	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72148418	72148419	rs12445401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q22.2		rs12445401-G	NR	5E-22		0.0286	[0.023-0.034] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1135	chr16	72148418	72148419	rs12445401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q22.2		rs12445401-G	NR	9E-21		0.0294	[0.023-0.035] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1135	chr16	72149060	72149061	rs6416742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q22.2		rs6416742-C	0.660687	4E-8		0.0226866	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72149922	72149923	rs9930957	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9930957-C	0.840158	4E-14		0.0415746	[0.031-0.052] unit increase	NR [11722792] (imputed)	N
1135	chr16	72149922	72149923	rs9930957	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	16q22.2		rs9930957-C	0.840161	2E-22		0.0526307	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72149922	72149923	rs9930957	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	16q22.2		rs9930957-C	0.840216	5E-29		0.0624432	[0.051-0.073] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72154508	72154509	rs4788460	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q22.2	PMFBP1	rs4788460-C	0.704787	6E-19		0.00372563	[0.0029-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
1135	chr16	72154508	72154509	rs4788460	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	16q22.2	PMFBP1	rs4788460-T	0.29	3E-16		8.16	z-score increase	Affymetrix [4312306] (imputed)	N
1135	chr16	72155236	72155237	rs11647069	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16q22.2	PMFBP1	rs11647069-T	0.682274	8E-17		0.004559	[0.0035-0.0056] unit decrease	Affymetrix [13995440] (imputed)	N
1135	chr16	72155236	72155237	rs11647069	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (family Bacteroidales S24 7group id.11173)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q22.2		rs11647069-C	NR	2E-8		5.5789924	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1135	chr16	72162101	72162102	rs8044868	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in cancer or chronic obstructive pulmonary disease	1,085 cancer cases, 237 COPD cases	NA	16q22.2	PMFBP1	rs8044868-?		8E-6		0.029	[0.017-0.041] unit increase	Affymetrix [418365]	N
1135	chr16	72162101	72162102	rs8044868	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in cancer	1,085 cases	NA	16q22.2	PMFBP1	rs8044868-?		5E-6		0.031	[0.018-0.044] unit increase	Affymetrix [418365]	N
1135	chr16	72163920	72163921	rs34309753	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q22.2	NR	rs34309753-A	0.36	8E-100	(Haptoglobin, HP.3054.3.2)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
1135	chr16	72164944	72164945	rs79636708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs79636708-T	NR	2E-13		0.067	[0.049-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72164944	72164945	rs79636708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs79636708-T	NR	2E-15		0.0727	[0.055-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72164944	72164945	rs79636708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs79636708-T	NR	6E-14		0.0689	[0.051-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72169261	72169262	rs142710267	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	16q22.2	NR	rs142710267-?		7E-12		0.0162445	[0.012-0.021] unit increase	Affymetrix [19400418] (imputed)	N
1135	chr16	72181552	72181553	rs79940707	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q22.2	PMFBP1	rs79940707-C	0.842973	1E-12		0.0190564	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1135	chr16	72184628	72184629	rs217180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs217180-T	NR	2E-10		0.0255	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72184628	72184629	rs217180	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs217180-T	NR	2E-9		0.0243	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr16	72194762	72194763	rs17604185	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q22.2	PMFBP1	rs17604185-A	0.975694	3E-12		0.00520746	[0.0037-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
1135	chr16	72205021	72205022	rs71391445	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	16q22.2	PMFBP1	rs71391445-G	0.181	5E-13		0.04	[0.03-0.05] unit increase	Illumina [NR] (imputed)	N
1135	chr16	72205670	72205671	rs72791114	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q22.2	NR	rs72791114-?	NR	2E-7	(AA)	1.1381	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1135	chr16	72207796	72207797	rs3812984	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	16q22.2	PMFBP1, DHX38	rs3812984-?		3E-9				NR [6786993] (imputed)	N
1135	chr16	72207796	72207797	rs3812984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.2	NR	rs3812984-T	0.535	4E-13		0.00786189	[0.0057-0.01] unit increase	NR [9732723] (imputed)	N
1135	chr16	72210864	72210865	rs17604349	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	16q22.2		rs17604349-A	0.1792	1E-15		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1135	chr16	72210864	72210865	rs17604349	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q22.2	PMFBP1, ZFHX3	rs17604349-G	0.8152	3E-19		1.0385294		Affymetrix [11880941] (imputed)	N
1135	chr16	72210864	72210865	rs17604349	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	16q22.2	PMFBP1, ZFHX3	rs17604349-G	0.8152	3E-19		1.0381081		Affymetrix [11880941] (imputed)	N
1135	chr16	72210864	72210865	rs17604349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.2		rs17604349-A	0.1852	2E-12		0.0127	[0.0092-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1135	chr16	72210864	72210865	rs17604349	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	16q22.2	NR	rs17604349-?		2E-11	(HP)	0.282	[NR] unit increase	Illumina [NR]	N
1135	chr16	72212043	72212044	rs7191623	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q22.2	PMFBP1	rs7191623-G	0.790175	5E-10		0.0152677	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
1135	chr16	72214275	72214276	rs11643192	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	16q22.2	NR	rs11643192-A	NR	1E-11		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1135	chr16	72214275	72214276	rs11643192	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	16q22.2	NR	rs11643192-A	0.3893	1E-9		0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1135	chr16	72214275	72214276	rs11643192	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	16q22.2	PMFBP1, DHX38	rs11643192-A	0.41	3E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
1135	chr16	72214612	72214613	rs11075924	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q22.2	PMFBP1	rs11075924-A	0.4934	2E-12		0.01812527	[0.013-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1135	chr16	72214857	72214858	rs12325266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q22.2	PMFBP1	rs12325266-T	0.364391	2E-11		0.015675854	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr16	72214973	72214974	rs217179	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs217179-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1135	chr16	72215146	72215147	rs35746112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	16q22.2		rs35746112-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1135	chr16	72216788	72216789	rs7200153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q22.2	PMFBP1	rs7200153-?	NR	9E-10		5.104	[3.47-6.74] unit increase	Illumina [32003504] (imputed)	N
1135	chr16	72216788	72216789	rs7200153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	16q22.2	PMFBP1	rs7200153-?	NR	3E-7	(AA)	4.971251	[3.08-6.87] unit increase	Illumina [32003504] (imputed)	N
1135	chr16	72216788	72216789	rs7200153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	16q22.2	PMFBP1	rs7200153-?	NR	1E-9		4.675	[3.17-6.18] unit increase	Illumina [31808917] (imputed)	N
1135	chr16	72216788	72216789	rs7200153	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	16q22.2	PMFBP1	rs7200153-?	NR	1E-6	(AA)	4.407623	[2.62-6.2] unit increase	Illumina [31808917] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	3E-9		0.0290674	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	3E-8		0.0268987	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	4E-8		0.0267423	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	1E-8		0.0277544	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	2E-8		0.0274976	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	1E-8		0.0279361	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	1E-9		0.0299068	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	9E-9		0.0281216	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	16q22.2		rs7202323-T	0.770072	1E-9		0.0295936	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q22.2	PMFBP1, ZFHX3	rs7202323-G	0.23	1E-28		11.1	z-score increase	Affymetrix [4311822] (imputed)	N
1135	chr16	72217112	72217113	rs7202323	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q22.2	PMFBP1	rs7202323-T	0.770258	8E-25		0.0255122	[0.021-0.03] unit increase	Affymetrix [NR] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	4E-12		0.0372674	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	6E-12		0.0370556	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	6E-11		0.0353185	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	3E-10		0.0345098	[0.024-0.045] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833145	5E-12		0.0369087	[0.026-0.047] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833398	6E-10		0.0342043	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	1E-9		0.0323068	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	2E-8		0.0300503	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	1E-8		0.0300009	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	3E-11		0.0354393	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
1135	chr16	72219755	72219756	rs34417180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs34417180-C	0.833148	8E-9		0.0306351	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1135	chr16	72220372	72220373	rs7186908	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	16q22.2	HPR, PMFBP1	rs7186908-C	0.24	5E-9		2.0	[1.10-2.90] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1136	chr16	72225186	72225187	rs16970670	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	16q22.2	NR	rs16970670-?	NR	4E-6	(AA)	1.0285	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1136	chr16	72225313	72225314	rs8054585	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q22.2	NR	rs8054585-A	NR	2E-10		0.0179	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr16	72227397	72227398	rs35549608	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	16q22.2	PMFBP1	rs35549608-C	0.159732	7E-9		0.02477	[0.016-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1136	chr16	72228505	72228506	rs3852789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs3852789-C	NR	4E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1136	chr16	72228505	72228506	rs3852789	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	16q22.2	NR	rs3852789-?	NR	8E-23	(Haptoglobin)			Illumina [514227]	N
1136	chr16	72229531	72229532	rs11645898	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	PMFBP1, DHX38	rs11645898-C	0.1686747	2E-15	(EA, Haptoglobin)	0.4681	[0.35-0.58] unit decrease	Affymetrix [509946]	N
1136	chr16	72230111	72230112	rs9923575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9923575-C	0.805135	2E-8		0.0289583	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1136	chr16	72230111	72230112	rs9923575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	16q22.2		rs9923575-C	0.805135	1E-8		0.0292848	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1136	chr16	72230111	72230112	rs9923575	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	16q22.2		rs9923575-C	0.805135	1E-8		0.0293925	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
1136	chr16	72230111	72230112	rs9923575	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.2	PMFBP1	rs9923575-?	NR	4E-10	(UnSat)	0.055577114	NR unit increase	Illumina [609262]	N
1136	chr16	72230693	72230694	rs9936784	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q22.2	NR	rs9936784-G	0.53418	4E-8	(Conditioned on chr16:72950468, chr16:72574550)	0.013989473	[0.009-0.019] unit increase	NR [~ 10000000] (imputed)	N
1136	chr16	72245596	72245597	rs8051717	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,366 Icelandic ancestry individuals	NA	16q22.2		rs8051717-G	0.2788	7E-31		0.231089	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
1136	chr16	72251073	72251074	rs12920967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q22.2	NR	rs12920967-C	NR	1E-11		0.0243	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr16	72251073	72251074	rs12920967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs12920967-C	NR	3E-18		0.0312	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr16	72251073	72251074	rs12920967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs12920967-C	NR	2E-20		0.0333	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr16	72251073	72251074	rs12920967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs12920967-C	NR	1E-19		0.0326	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1136	chr16	72251131	72251132	rs811054	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	16q22.2		rs811054-T	0.54	2E-7		0.011	mmol/L increase	NR [NR] (imputed)	N
1136	chr16	72251131	72251132	rs811054	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q22.2		rs811054-T	0.54	4E-8				NR [NR] (imputed)	N
1136	chr16	72251131	72251132	rs811054	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q22.2		rs811054-T	0.54	2E-10		0.01	% increase	NR [NR] (imputed)	N
1136	chr16	72251131	72251132	rs811054	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q22.2	PMFBP1	rs811054-C	0.462891	4E-10		0.00863679	[0.0059-0.0113] unit decrease	Affymetrix [12370749]	N
1136	chr16	72251131	72251132	rs811054	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs811054-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1136	chr16	72251131	72251132	rs811054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.2		rs811054-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1136	chr16	72251131	72251132	rs811054	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q22.2	NA	rs811054-T	0.5333	2E-16		0.0135	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1136	chr16	72252096	72252097	rs55771535	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q22.2	PMFBP1, ZFHX3	rs55771535-A	0.13	6E-10		29.88	[20.41-39.35] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1136	chr16	72252096	72252097	rs55771535	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q22.2	PMFBP1, ZFHX3	rs55771535-A	0.07	8E-6	(EA)	28.02	[15.71-40.33] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1136	chr16	72252096	72252097	rs55771535	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		16q22.2		rs55771535-?	NR	8E-6		18.82	[10.57-27.07] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1136	chr16	72252543	72252544	rs35223533	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	16q22.2		rs35223533-A	0.895102	2E-8		0.0352295	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
1136	chr16	72257698	72257699	rs17668704	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	16q22.2	PMFBMP1	rs17668704-A	0.61	9E-6	(AA-glucose response)	3.38	[1.89-4.87] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1136	chr16	72258651	72258652	rs61750467	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q22.2	NR	rs61750467-?	NR	2E-8				Illumina [7760689] (imputed)	N
1136	chr16	72259191	72259192	rs28655387	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy)	1,826 children	NA	16q22.2	Intergenic	rs28655387-T	0.9457	8E-6		4.478	z score decrease	Illumina [at least 6190549] (imputed)	N
1136	chr16	72259191	72259192	rs28655387	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	16q22.2	intergenic	rs28655387-T	0.9457	3E-6		4.649	z score decrease	Illumina [at least 6190549] (imputed)	N
1136	chr16	72281949	72281950	rs62058277	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q22.2	NR	rs62058277-?	NR	8E-9		0.2949	[0.19-0.39] unit decrease	Affymetrix [7794483] (imputed)	N
1136	chr16	72281949	72281950	rs62058277	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q22.2	NR	rs62058277-?	NR	3E-6	(male)	0.37544	[0.22-0.53] unit decrease	Affymetrix [7794483] (imputed)	N
1136	chr16	72287645	72287646	rs144463780	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q22.2		rs144463780-G	0.992706	4E-13		0.183193	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
1136	chr16	72321609	72321610	rs191336263	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16q22.2	Intergenic	rs191336263-G	NR	4E-6		1.79446	[1.03-2.56] unit decrease	Illumina [13520550] (imputed)	N
1136	chr16	72323619	72323620	rs117607375	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	16q22.2	NR	rs117607375-C	0.006419	4E-6		0.8803	[0.51-1.25] unit decrease	Illumina [10677593] (imputed)	N
1136	chr16	72329509	72329510	rs2194316	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium I ramulus A abundance in stool	5,959 Finnish ancestry individuals	NA	16q22.2		rs2194316-T	0.315334	2E-8		0.0523483	[0.034-0.071] unit increase	Illumina [7980478] (imputed)	N
1136	chr16	72329509	72329510	rs2194316	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	16q22.2	PMFBP1, ZFHX3	rs2194316-C	0.7429	3E-15		1.0307153		Affymetrix [11880941] (imputed)	N
1136	chr16	72338506	72338507	rs79616692	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16q22.2	NR	rs79616692-C	0.108	4E-12		0.016302273	[0.012-0.021] unit increase	NR [~ 10000000] (imputed)	N
1137	chr16	72356963	72356964	rs11648570	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16q22.2	PMFBP1	rs11648570-T	0.89	2E-12		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1137	chr16	72356963	72356964	rs11648570	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16q22.2	LINC01572	rs11648570-C	0.1074	7E-9		0.0095	[0.0062-0.0128] unit increase	Affymetrix [~ 7740000] (imputed)	N
1137	chr16	72356963	72356964	rs11648570	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	16q22.2	PMFBP1	rs11648570-C	0.107	2E-8		0.023	[0.015-0.031] unit increase	Illumina [~ 250000] (imputed)	N
1137	chr16	72381459	72381460	rs17607347	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	16q22.2	ENSG00000207514	rs17607347-T	NR	2E-9		0.022482011	[0.015-0.03] unit decrease	Affymetrix [NR]	N
1137	chr16	72389871	72389872	rs62053992	32246137	Meng W	2020-04-03	Hum Mol Genet	A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.	Neck pain or shoulder pain	53,994 European ancestry cases, 149,312 European ancestry controls	5,035 cases, 18,545 controls	16q22.2	NR	rs62053992-?	NR	4E-9		0.0098	[0.0063-0.0133] unit decrease	NR [9304965] (imputed)	N
1137	chr16	72389871	72389872	rs62053992	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q22.2	NR	rs62053992-?	NR	1E-6		4.865	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1137	chr16	72396916	72396917	rs56205630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.2		rs56205630-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1137	chr16	72450481	72450482	rs1013982	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q22.2	Intergenic	rs1013982-A	0.6419	1E-12	(MTAG)	0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr16	72452144	72452145	rs9923937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q22.2	NR	rs9923937-C	NR	3E-9		0.0313	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1137	chr16	72479203	72479204	rs116529621	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q22.2	AC004158.3, LINC01572	rs116529621-T	0.0999	3E-6		0.0542	[0.031-0.077] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1137	chr16	72479203	72479204	rs116529621	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q22.2	AC004158.3, LINC01572	rs116529621-T	0.0999	3E-7		0.0592	[0.036-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1138	chr16	72497720	72497721	rs62051146	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q22.2		rs62051146-A	0.8886	2E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1138	chr16	72505533	72505534	rs76513770	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16q22.2	LINC01572	rs76513770-T	0.871275	5E-15		0.0239791	[0.018-0.03] unit decrease	NR [16516521] (imputed)	N
1138	chr16	72505533	72505534	rs76513770	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs76513770-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1138	chr16	72505533	72505534	rs76513770	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q22.2	ZFHX3	rs76513770-T	0.8714	4E-10		0.02411434	[0.017-0.032] unit increase	Affymetrix [~ 11515000] (imputed)	N
1138	chr16	72505533	72505534	rs76513770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.2		rs76513770-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1138	chr16	72505533	72505534	rs76513770	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	16q22.2	PMFBP1	rs76513770-C	0.12841800000000003	5E-9		0.0337237	[0.022-0.045] unit increase	Affymetrix [641018] (imputed)	N
1138	chr16	72509494	72509495	rs35999374	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs anorexia nervosa (ordinary least squares (OLS))	19,099 ADHD cases, 16,992 anorexia nervosa cases	NA	16q22.2		rs35999374-?	NR	3E-9		0.0211	NR unit increase	NR [5496413] (imputed)	N
1138	chr16	72558835	72558836	rs78475042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs78475042-G	NR	4E-10		0.0434	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
1138	chr16	72558835	72558836	rs78475042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs78475042-G	NR	3E-9		0.0413	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1138	chr16	72569235	72569236	rs4448948	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q22.2		rs4448948-A	0.93	6E-19		0.022	[0.018-0.026] unit increase	NR [NR] (imputed)	N
1138	chr16	72574549	72574550	rs62052916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.2	NR	rs62052916-T	0.0701	6E-15		0.0164936	[0.012-0.021] unit decrease	NR [9732723] (imputed)	N
1138	chr16	72574549	72574550	rs62052916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q22.2	NR	rs62052916-T	0.0701	2E-10		0.031913772	[0.022-0.042] unit decrease	NR [~ 10000000] (imputed)	N
1138	chr16	72574549	72574550	rs62052916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16q22.2	NR	rs62052916-T	0.0743	5E-10		0.0173609	[0.012-0.023] unit increase	NR [9732723] (imputed)	N
1138	chr16	72578130	72578131	rs212178	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs ADHD (ordinary least squares (OLS))	170,756 MDD cases, 19,099 ADHD cases	NA	16q22.2		rs212178-?	NR	3E-8		0.0126	NR unit increase	NR [5568121] (imputed)	N
1138	chr16	72578130	72578131	rs212178	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	16q22.2	NR	rs212178-?		8E-9				NR [8028859]	N
1138	chr16	72587092	72587093	rs12596294	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	16q22.2	NR	rs12596294-?		2E-8				NR [520857]	N
1138	chr16	72587092	72587093	rs12596294	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or intracranial volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 24,024 European ancestry individuals	NA	16q22.2	NR	rs12596294-?	NR	1E-8		5.673685	NR z score increase	NR [up to 9186920] (imputed)	N
1139	chr16	72622059	72622060	rs7189059	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q22.2	NR	rs7189059-?	NR	5E-6		0.0422	[0.024-0.06] unit increase	Illumina [at least 560000] (imputed)	N
1139	chr16	72624209	72624210	rs35449889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.2	NR	rs35449889-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1139	chr16	72629055	72629056	rs114900182	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q22.2	ZFHX3	rs114900182-C	0.932	6E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1139	chr16	72629055	72629056	rs114900182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q22.2		rs114900182-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1139	chr16	72667192	72667193	rs11648635	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	16q22.2	AC004158.2	rs11648635-A	0.13203	9E-6		0.198025	[0.11-0.29] unit increase	Illumina [6969139] (imputed)	N
1139	chr16	72668428	72668429	rs191293513	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16q22.2	Intergenic	rs191293513-G	NR	4E-6		1.79732	[1.04-2.56] unit increase	Illumina [13520550] (imputed)	N
1139	chr16	72694351	72694352	rs1429433	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	16q22.2	ZFHX3	rs1429433-A	0.29	8E-6	(Subnasal width)	0.204	[NR] unit decrease	Affymetrix [311944]	N
1139	chr16	72736629	72736630	rs113007555	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q22.2		rs113007555-G	0.85109	5E-14		0.043844	[0.032-0.055] unit decrease	NR [11722792] (imputed)	N
1140	chr16	72747684	72747685	rs34889159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q22.2	NR	rs34889159-A	0.151185	5E-11				Affymetrix, Illumina [24332387] (imputed)	N
1140	chr16	72756100	72756101	rs10500569	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs10500569-T	NR	1E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr16	72756100	72756101	rs10500569	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	16q22.2	ZFHX3	rs10500569-?	0.23	7E-12				Illumina [~ 2000000] (imputed)	N
1140	chr16	72759680	72759681	rs139235535	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	16q22.2	HP	rs139235535-C	0.974836	1E-6		0.549458	[0.33-0.77] unit decrease	Affymetrix [8590397] (imputed)	N
1140	chr16	72777224	72777225	rs12598219	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	16q22.2	ZFHX3, LOC101927978, KRT18P18, RNU7-71P	rs12598219-?	0.1383	2E-6		4.0172997	NR	Illumina [5009928] (imputed)	N
1140	chr16	72800566	72800567	rs8044476	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	16q22.2	RP5-991G20.1	rs8044476-G	0.1394183	8E-14	(EA, Haptoglobin)	0.4803	[0.36-0.6] unit decrease	Affymetrix [509946]	N
1140	chr16	72807437	72807438	rs4327060	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16q22.2		rs4327060-C	0.945604	6E-8		0.023	[0.015-0.031] unit decrease	NR [7250403] (imputed)	N
1140	chr16	72810579	72810580	rs150930638	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	16q22.2	Intergenic	rs150930638-G	NR	3E-6		1.81717	[1.05-2.58] unit increase	Illumina [13520550] (imputed)	N
1140	chr16	72818626	72818627	rs117155836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.2	NR	rs117155836-A	NR	1E-11		0.049	[0.035-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr16	72818626	72818627	rs117155836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.2	NR	rs117155836-A	NR	5E-13		0.0523	[0.038-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr16	72818626	72818627	rs117155836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs117155836-A	NR	5E-10		0.0452	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1140	chr16	72824677	72824678	rs117558284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.2	NR	rs117558284-C	NR	4E-9		0.0435	[0.029-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1140	chr16	72828303	72828304	rs2229288	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	16q22.2	ZFHX3	rs2229288-C	0.0022	1E-6				Affymetrix, Illumina [NR] (imputed)	N
1140	chr16	72830538	72830539	rs62051555	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16q22.2		rs62051555-G	0.0476	8E-11		0.40854397	[0.28-0.54] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1140	chr16	72830538	72830539	rs62051555	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	16q22.2		rs62051555-G	0.0476	1E-25		0.47320133	[0.38-0.56] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1140	chr16	72830538	72830539	rs62051555	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16q22.2	ZFHX3	rs62051555-G	0.0434	4E-8		0.024	[0.016-0.032] unit decrease	Illumina [246328]	N
1140	chr16	72846090	72846091	rs75232769	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	16q22.3	NR	rs75232769-A	0.006419	2E-6		0.8967	[0.53-1.27] unit decrease	Illumina [10677593] (imputed)	N
1141	chr16	72877157	72877158	rs9921081	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	16q22.3		rs9921081-C	NR	2E-12		0.9043704	[0.879380616579749-0.930070403810424]	Illumina [8919992] (imputed)	N
1141	chr16	72911405	72911406	rs7197197	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	16q22.3	ZFHX3	rs7197197-A	NR	3E-12		1.16	[1.11-1.21]	NR [2286360] (imputed)	N
1141	chr16	72911405	72911406	rs7197197	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.3		rs7197197-?	NR	2E-11		0.0139025	[0.0097-0.0181] unit decrease	Affymetrix [20259828] (imputed)	N
1141	chr16	72911738	72911739	rs7198843	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q22.3	ZFHX3	rs7198843-T	0.430976	2E-14		0.0144254	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1141	chr16	72911738	72911739	rs7198843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.3		rs7198843-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1141	chr16	72912879	72912880	rs17679693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q22.3	NR	rs17679693-G	NR	1E-14		0.0439	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr16	72912879	72912880	rs17679693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	16q22.3	NR	rs17679693-G	NR	2E-18		0.0501	[0.039-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr16	72912879	72912880	rs17679693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q22.3	NR	rs17679693-G	NR	6E-17		0.0478	[0.037-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1141	chr16	72931084	72931085	rs16971384	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	16q22.3	ZFHX3	rs16971384-A	0.55	5E-6		0.0715	[0.041-0.102] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1141	chr16	72934442	72934443	rs6499595	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	16q22.3	ZFHX3	rs6499595-C	0.3987	4E-8		0.014426594	[0.0093-0.0196] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1141	chr16	72934442	72934443	rs6499595	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16q22.3	ZFHX3	rs6499595-C	0.3986	5E-8		0.013198892	[0.0085-0.0179] unit decrease	Affymetrix [11515109] (imputed)	N
1141	chr16	72942423	72942424	rs17618144	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q22.3		rs17618144-G	0.758	1E-11		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1141	chr16	72950467	72950468	rs4788676	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.3	NR	rs4788676-C	0.229	1E-8		0.00731008	[0.0048-0.0098] unit decrease	NR [9732723] (imputed)	N
1141	chr16	72950467	72950468	rs4788676	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q22.3	NR	rs4788676-C	0.228528	5E-9	(Conditioned on chr16:72574550)	0.017745035	[0.012-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1141	chr16	72950467	72950468	rs4788676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q22.3		rs4788676-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1141	chr16	72951626	72951627	rs12930834	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16q22.3	ZFHX3	rs12930834-A	0.7634	7E-9		0.013715122	[0.0091-0.0183] unit increase	Affymetrix [11514654] (imputed)	N
1141	chr16	72958966	72958967	rs12922127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q22.3		rs12922127-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1141	chr16	72960282	72960283	rs4788488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q22.3		rs4788488-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1141	chr16	72993705	72993706	rs62053191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.3	NR	rs62053191-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1141	chr16	72996161	72996162	rs756717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q22.3		rs756717-A	NR	4E-15		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1141	chr16	72996161	72996162	rs756717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.3	NR	rs756717-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1141	chr16	72996161	72996162	rs756717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.3		rs756717-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1141	chr16	72996161	72996162	rs756717	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	16q22.3	NR	rs756717-G	NR	2E-8		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1141	chr16	72996161	72996162	rs756717	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q22.3	ZFHX3	rs756717-A	0.4	3E-9		0.015	[0.0091-0.0209] unit decrease	Illumina [6108953] (imputed)	N
1141	chr16	72996982	72996983	rs7190256	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	16q22.3	NR	rs7190256-?	NR	3E-11				Affymetrix [NR]	N
1141	chr16	72996982	72996983	rs7190256	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	16q22.3	NR	rs7190256-?	NR	5E-10				Affymetrix [NR]	N
1141	chr16	73001772	73001773	rs12595893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	16q22.3	NR	rs12595893-A	NR	9E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1142	chr16	73009023	73009024	rs7199343	19132087	Burgner D	2009-01-09	PLoS Genet	A genome-wide association study identifies novel and functionally related susceptibility Loci for Kawasaki disease.	Kawasaki disease	107 European ancestry cases, 134 European ancestry controls	583 European ancestry cases, 1,357 European ancestry controls from 583 families	16q22.3	ZFHX3	rs7199343-T	0.30	2E-6		1.56	[1.33-1.92]	Affymetrix [223922]	N
1142	chr16	73017060	73017061	rs16971465	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q22.3	NR	rs16971465-C	NR	6E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q22.3		rs1858800-T	NR	3E-17		0.0151	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q22.3		rs1858800-T	NR	3E-28		0.0266	[0.022-0.031] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q22.3	NR	rs1858800-T	0.3453	5E-33		0.002785	[0.0023-0.0033] unit increase	Affymetrix [NR] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	16q22.3	NR	rs1858800-T	0.35	1E-6		1.12	[1.07-1.17]	Illumina [~ 1072558] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q22.3	ZFHX3	rs1858800-T	0.3219	3E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q22.3	ZFHX3	rs1858800-T	0.3476	5E-14		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q22.3	ZFHX3	rs1858800-C	0.761	2E-8		5.628	NR z score decrease	Illumina [26237160] (imputed)	N
1142	chr16	73024275	73024276	rs1858800	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	16q22.3	ZFHX3	rs1858800-T	0.332	1E-18		1.36	[NR]	Illumina [8207076] (imputed)	N
1142	chr16	73029159	73029160	rs7193343	26708676	Pulit SL	2015-12-18	Lancet Neurol	Loci associated with ischaemic stroke and its subtypes (SiGN): a genome-wide association study.	Ischemic stroke (cardioembolic)	up to 3,400 European ancestry cases, up to 208 African ancestry cases, up to 118 Hispanic cases, 26,690 European ancestry controls, 3,354 African ancestry controls, 2,429 Hispanic controls	98 African ancestry cases, 31 East Asian ancestry cases, 3,436 European ancestry cases, 97 Hispanic cases, 422 South Asian ancestry cases, 2,917 African ancestry controls, 329 East Asian ancestry controls, 274,063 European ancestry controls, 686 Hispanic controls, 5,193 South Asian ancestry controls	16q22.3	ZFHX3	rs7193343-T	0.174	2E-10	(CCSp)	1.17	[1.11-1.23]	Illumina [up to 15400000] (imputed)	N
1142	chr16	73029159	73029160	rs7193343	19597491	Gudbjartsson DF	2009-07-13	Nat Genet	A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke.	Atrial fibrillation	2,385 European ancestry cases, 33,752 European ancestry controls	up to 2,427 European ancestry cases, 3,379 European ancestry controls, 286 Han Chinese ancestry cases, 2,763 Han Chinese ancestry controls	16q22.3	ZFHX3	rs7193343-T	NR	1E-10		1.21	[1.14-1.29]	Illumina [303136]	N
1142	chr16	73032031	73032032	rs4404097	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	16q22.3	ZHFX3	rs4404097-A	0.16	6E-10		1.18	[1.12-1.24]	Illumina [8952551] (imputed)	N
1142	chr16	73041939	73041940	rs57828240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	16q22.3		rs57828240-G	NR	4E-9		0.0362	[0.024-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1142	chr16	73048366	73048367	rs67329386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic heart failure	14,262 European ancestry cases, 471,898 European ancestry controls, 10,540 East Asian ancestry cases, 168,186 East Asian ancestry controls	NA	16q22.3		rs67329386-T	NR	3E-9		0.0668	[0.045-0.089] unit increase	Affymetrix, Illumina [25844553] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	28460022	Lee JY	2017-04-27	Eur Heart J	Korean atrial fibrillation network genome-wide association study for early-onset atrial fibrillation identifies novel susceptibility loci.	Early onset atrial fibrillation	672 Korean ancestry cases, 3,700 Korean ancestry controls	200 Korean ancestry cases, 1,812 Korean ancestry controls	16q22.3	ZFHX3	rs2106261-T	0.348	3E-30		2.08	[1.83-2.36]	Affymetrix [642422]	N
1142	chr16	73051619	73051620	rs2106261	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	16q22.3	ZFHX3	rs2106261-T	0.31	1E-35	(Japanese)	1.326	[1.267-1.387]	Illumina [5018049] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		16q22.3	ZFHX3	rs2106261-T	0.18	1E-19		1.25	1.19-1.31	Affymetrix, Illumina [at least 3187278] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	16q22.3	ZFHX3	rs2106261-T	0.18	4E-24		1.19	[1.15-1.23]	Affymetrix, Illumina [11795432] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	16q22.3	ZFHX3	rs2106261-T	0.19	8E-32		1.2	[1.17-1.37]	Affymetrix, Illumina [11795432] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	3,666 cases, 139,852 controls	16q22.3	ZFHX3	rs2106261-T	0.19	1E-14		1.27	[1.20-1.35]	Affymetrix, Illumina [11795432] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	22544366	Ellinor PT	2012-04-29	Nat Genet	Meta-analysis identifies six new susceptibility loci for atrial fibrillation.	Atrial fibrillation	6,707 European ancestry cases, 52,426 European ancestry controls	5,381 European ancestry casses, 10,030 European ancestry  controls	16q22.3	ZFHX3	rs2106261-T	0.176	3E-16		1.24	[1.17-1.30]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1142	chr16	73051619	73051620	rs2106261	19597492	Benjamin EJ	2009-07-13	Nat Genet	Variants in ZFHX3 are associated with atrial fibrillation in individuals of European ancestry.	Atrial fibrillation	3,413 cases, 37,105 referents	2,145 cases, 4,073 controls	16q22.3	ZFHX3	rs2106261-T	0.174	2E-15		1.25		Affymetrix, Illumina [~ 2500000] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	16q22.3		rs2359171-A	0.305318943	1E-8		0.04905841	[0.032-0.066] unit increase	Illumina [13429980] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	16q22.3		rs2359171-A	0.301006966	2E-34		0.30836138	[0.26-0.36] unit increase	Illumina [13427194] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	16q22.3		rs2359171-A	NR	4E-75		0.2132	[0.19-0.24] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	16q22.3		rs2359171-A	0.30489312	7E-47		1.1940857	[1.165570592-1.223298503]	Illumina [8919992] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	16q22.3	ZFHX3	rs2359171-A	0.176	5E-91		1.19	[1.17-1.21]	Illumina [34740186] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	16q22.3	ZFHX3	rs2359171-A	0.19	3E-100		1.21	[1.19-1.23]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1142	chr16	73053021	73053022	rs2359171	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	16q22.3	ZFHX3	rs2359171-A	0.17	2E-76	(EA)	1.2	[1.17-1.22]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1142	chr16	73059158	73059159	rs4499262	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Incident atrial fibrillation	7,323 European ancestry cases, 102,776 European ancestry controls.		16q22.3	ZFHX3	rs4499262-A	0.17	4E-8		1.14	1.09-1.19	Affymetrix, Illumina [at least 3187278] (imputed)	N
1142	chr16	73063053	73063054	rs56274700	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16q22.3	ZFHX3	rs56274700-T	0.502	2E-6		0.0013	[0.00071-0.00189] unit decrease	Affymetrix [NR] (imputed)	N
1142	chr16	73063053	73063054	rs56274700	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16q22.3	ZFHX3	rs56274700-T	0.4456	7E-6	(EA)	0.0016	[0.00082-0.00238] unit decrease	Affymetrix [NR] (imputed)	N
1142	chr16	73067760	73067761	rs876727	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	16q22.3	ZFHX3	rs876727-T	0.791	7E-9		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
1142	chr16	73068162	73068163	rs34970912	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals	NA	16q22.3	NR	rs34970912-G	0.0352	3E-8		0.5213	[0.34-0.71] unit increase	Affymetrix, Illumina [7565493] (imputed)	N
1142	chr16	73068677	73068678	rs879324	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	16q22.3	ZFHX3	rs879324-A	0.19	2E-8	(CS)	1.25	[1.15-1.35]	Affymetrix, Illumina [NR] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	16q22.3	ZFHX3	rs12932445-C	0.2010	8E-10		1.16	[1.11-1.21]	Affymetrix, Illumina [NR] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (TOAST classification)	3,333 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	3E-9		1.1470461	[1.1-1.2]	Illumina [~ 10156805] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSp classification)	3,608 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	2E-9		1.1564949	[1.1-1.21]	Illumina [~ 10156805] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCSc classification)	3,000 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	5E-8		1.1414984	[1.09-1.2]	Illumina [~ 10156805] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCS or TOAST classification)	4,502 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	4E-10		1.138883	[1.09-1.19]	Illumina [~ 10156805] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCS and TOAST classification)	2,219 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	2E-7		1.1684898	[1.1-1.24]	Illumina [~ 10156805] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	5E-6				NR [~ 8000000] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls, 847 East Asian ancestry cases, 28,195 East Asian ancestry controls, 422 South Asian ancestry cases, 6,707 South Asian ancestry controls, 414 African American cases, 15,146 African American controls, 31 Asian ancestry cases, 333 Asian ancestry controls, 99 Latin American cases, 692 Latin American controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	7E-18				NR [~ 8000000] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (cardioembolic)	7,193 European ancestry cases, 406,111 European ancestry controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	7E-13				NR [~ 8000000] (imputed)	N
1142	chr16	73069887	73069888	rs12932445	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	16q22.3	ZFHX3	rs12932445-?	NR	2E-6				NR [~ 8000000] (imputed)	N
1142	chr16	73070082	73070083	rs4788694	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	16q22.3	ZFHX3	rs4788694-G	0.675	3E-8	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1142	chr16	73071380	73071381	rs34003787	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	16q22.3	NR	rs34003787-T	0.0862	2E-8		0.3239	[0.21-0.44] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
1142	chr16	73079682	73079683	rs7204751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.3		rs7204751-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1142	chr16	73095430	73095432	rs138418529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q22.3		rs138418529-A	NR	8E-18		0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1142	chr16	73095430	73095430	rs747489841	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q22.3		rs747489841-AAC	0.36	5E-9				NR [NR] (imputed)	N
1142	chr16	73095430	73095430	rs747489841	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	16q22.3		rs747489841-AAC	0.36	9E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
1142	chr16	73095430	73095430	rs747489841	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q22.3		rs747489841-AAC	0.36	1E-10		0.01	% increase	NR [NR] (imputed)	N
1142	chr16	73096242	73096243	rs2285394	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q22.3	ISL1	rs2285394-?		7E-11				NR [7428630] (imputed)	N
1142	chr16	73096242	73096243	rs2285394	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q22.3	ZFHX3	rs2285394-?		8E-9				NR [7428630] (imputed)	N
1142	chr16	73097028	73097029	rs7498798	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q22.3		rs7498798-G	0.37	1E-13		7.4	z score increase	Affymetrix [9061022] (imputed)	N
1142	chr16	73097028	73097029	rs7498798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q22.3		rs7498798-A	NR	4E-9		0.0468	[0.031-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1142	chr16	73097028	73097029	rs7498798	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q22.3	NR	rs7498798-G	0.3549	2E-16				NR [9056863] (imputed)	N
1142	chr16	73097028	73097029	rs7498798	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q22.3	NR	rs7498798-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1142	chr16	73097844	73097845	rs62055084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q22.3		rs62055084-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1142	chr16	73097955	73097956	rs739414	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q22.3	intergenic	rs739414-T	0.7376	1E-8		0.1276	[0.084-0.171] mmHg increase	Affymetrix [NR] (imputed)	N
1142	chr16	73098090	73098091	rs1075855	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q22.3	NR	rs1075855-G	0.2791	4E-9		0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1142	chr16	73100307	73100308	rs6416749	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q22.3		rs6416749-C	0.32	4E-11		6.59	z score increase	Affymetrix [9061022] (imputed)	N
1142	chr16	73100307	73100308	rs6416749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q22.3		rs6416749-T	0.602632346	1E-9		0.06440831	[0.044-0.085] unit decrease	Illumina [13134967] (imputed)	N
1142	chr16	73100307	73100308	rs6416749	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16q22.3	ZFHX3	rs6416749-C	0.375	3E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1142	chr16	73100307	73100308	rs6416749	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	16q22.3	NR	rs6416749-T		1E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
1142	chr16	73127722	73127723	rs62052380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q22.3		rs62052380-T	NR	1E-9		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1142	chr16	73127722	73127723	rs62052380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q22.3		rs62052380-T	NR	5E-8		0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1143	chr16	73148666	73148667	rs34516333	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	16q22.3	C16orf47, HCCAT5, ZFHX3	rs34516333-T	0.27	1E-6		0.24	[0.14-0.34] unit increase	Illumina [at least 4710000] (imputed)	N
1143	chr16	73159969	73159970	rs8054028	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	16q22.3	c16orf47	rs8054028-?		2E-7	(BDE-153)	0.39	[0.25-0.53] unit decrease	Affymetrix [629686]	N
1143	chr16	73177224	73177225	rs9673570	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q22.3	C16orf47	rs9673570-?	NR	1E-9	(Tyr)	0.057316832	NR unit increase	Illumina [609262]	N
1143	chr16	73177224	73177225	rs9673570	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q22.3	C16orf47	rs9673570-?	NR	5E-6	(Tyr)	0.05739831	NR unit increase	Illumina [609262]	N
1143	chr16	73195848	73195849	rs28533147	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q22.3	MARVELD3, PHLPP2, AP1G1, PKD1L3, PMFBP1, ZFHX3	rs28533147-?		4E-10				Affymetrix, Illumina [NR] (imputed)	N
1144	chr16	73277588	73277589	rs4129177	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q22.3	NR	rs4129177-C	0.462	3E-8		0.00609175	[0.0039-0.0083] unit increase	NR [9732723] (imputed)	N
1144	chr16	73303212	73303213	rs6420387	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	16q22.3	AC140912.1	rs6420387-T	0.1578	3E-8		1.8613462	1.64241421977584-2.08027821977584	Illumina [7077246] (imputed)	N
1144	chr16	73303212	73303213	rs6420387	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	16q22.3	NR	rs6420387-T	0.1565	9E-8		1.822301	[1.46198631380313-2.27141730478267]	Illumina [7076963] (imputed)	N
1144	chr16	73348333	73348334	rs7199250	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q22.3	ZFHX3	rs7199250-?	NR	6E-6	(SM 14:0)	0.19659647	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1144	chr16	73352628	73352629	rs147089336	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	16q22.3	LOC100506172	rs147089336-A	0.01	5E-6		9.58	[5.48-13.68] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1144	chr16	73362337	73362338	rs9935274	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	16q22.3	NR	rs9935274-A		4E-7		1.968	[NR]	NR [NR]	N
1144	chr16	73380362	73380363	rs12325540	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	16q22.3	intergenic	rs12325540-C	0.788	9E-8		0.236	[0.15-0.32] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1145	chr16	73420305	73420306	rs112242465	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q22.3	NR	rs112242465-A	0.01568	4E-10	(DCN)	0.05575	NR unit increase	Illumina [1671387] (imputed)	N
1145	chr16	73426889	73426890	rs117934006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.3		rs117934006-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1145	chr16	73433444	73433445	rs116974145	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	16q22.3	NR	rs116974145-?		5E-6		38.5584	[22.16-54.96] unit decrease	NR [NR] (imputed)	N
1145	chr16	73439354	73439355	rs9934948	22232737	Shu XO	2012-01-09	Cancer Res	Novel genetic markers of breast cancer survival identified by a genome-wide association study.	Breast cancer (survival)	1,950 Chinese ancestry cases	4,160 Chinese ancestry cases	16q22.3	intergenic	rs9934948-C	NR	6E-6	(Total Mortality)	1.29	[1.16-1.44]	Affymetrix [613031]	N
1145	chr16	73452853	73452854	rs8060270	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	16q22.3		rs8060270-?	NR	3E-6	(mucinous_all)	1.67		Illumina [11595112] (imputed)	N
1145	chr16	73462485	73462486	rs1364064	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	16q22.3	Intergenic	rs1364064-?	NR	5E-7		1.393	[NR]	Affymetrix [492217] (imputed)	N
1145	chr16	73465375	73465376	rs4888280	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Behavioural changes in frontotemporal lobe dementia	262 European ancestry cases, 120 European ancestry controls	NA	16q22.3	ZFHX3	rs4888280-A	0.33	7E-6		2.0	[1.71-2.29]	Illumina [7033776] (imputed)	N
1145	chr16	73501535	73501536	rs12446956	21042317	Wray NR	2010-11-02	Mol Psychiatry	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	16q22.3	intergenic	rs12446956-C	0.13	1E-6		1.22	[NR]	Affymetrix, Illumina [1251157] (imputed)	N
1145	chr16	73513338	73513339	rs7193665	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q22.3	NR	rs7193665-?	NR	2E-9	(left caudate)			NR [9227495] (imputed)	N
1146	chr16	73561475	73561476	rs147196937	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	16q22.3	NR	rs147196937-T	0.01	4E-6		1.58	[1.38-1.78]	Illumina [8468885] (imputed)	N
1146	chr16	73581057	73581058	rs7191888	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	16q22.3	C16orf47	rs7191888-?	0.17	6E-6			[NR]	Illumina [551642]	N
1146	chr16	73600571	73600572	rs825702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q22.3		rs825702-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1146	chr16	73602925	73602926	rs862227	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	16q22.3	intergenic	rs862227-?	NR	5E-11		0.015921	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1146	chr16	73606562	73606563	rs825680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q22.3		rs825680-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1146	chr16	73633935	73633936	rs7189864	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	16q22.3	ZFHX3, PSMD7	rs7189864-?	NR	4E-9		1.069	[1.046-1.094]	Illumina [13729857] (imputed)	N
1146	chr16	73659946	73659947	rs553720752	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR+ CD11b- Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q22.3		rs553720752-A	0.01611	2E-8		0.693	[0.45-0.93] unit decrease	Illumina [17203588] (imputed)	N
1147	chr16	73676741	73676742	rs1480570	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16q22.3	NR	rs1480570-A	0.6627	7E-7		0.0136	[0.0082-0.019] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1147	chr16	73695340	73695341	rs55803708	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q22.3		rs55803708-C	0.8	3E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1147	chr16	73710149	73710150	rs62041356	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16q22.3	NR	rs62041356-C	0.132302457536142	1E-8		0.0076995515	[0.005-0.0104] unit increase	NR [NR]	N
1147	chr16	73712233	73712234	rs8059199	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	16q22.3		rs8059199-C	0.2155	5E-6		0.5723	[0.4509-0.7265]	Affymetrix [7975321] (imputed)	N
1147	chr16	73713682	73713683	rs764255	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		16q22.3	intergenic	rs764255-T	0.66	2E-7		0.077	[0.048-0.106] unit decrease	Illumina [~ 2400000] (imputed)	N
1147	chr16	73722290	73722291	rs143661751	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.3	Intergenic	rs143661751-G	1.0	2E-6	(AA)	0.464	unit increase	Illumina [NR] (imputed)	N
1147	chr16	73752877	73752878	rs12927636	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Perceptual and visual search speed (trail making test A)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	16q22.3		rs12927636-G	NR	8E-6		0.07014	[0.04-0.101] unit decrease	NR [534934]	N
1147	chr16	73764799	73764800	rs16972410	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16q22.3	NR	rs16972410-T	0.0950667	4E-7		1.073	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1148	chr16	73793551	73793552	rs2063506	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	16q22.3	NR	rs2063506-G	0.4705104469717	2E-6				NR [9276018] (imputed)	N
1148	chr16	73795003	73795004	rs6564524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q22.3		rs6564524-T	NR	1E-15		0.0127	[0.0096-0.0158] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1148	chr16	73795003	73795004	rs6564524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q22.3		rs6564524-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1148	chr16	73808618	73808619	rs13333522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q22.3	NR	rs13333522-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1148	chr16	73810453	73810454	rs16972552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16q22.3	LOC101927998	rs16972552-C	0.8838	2E-8		0.017533675	[0.011-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
1148	chr16	73822970	73822971	rs116203827	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	16q22.3	RP11-53L24.1	rs116203827-G	NR	1E-5		13.6681	[7.82-19.52] unit decrease	Illumina [NR] (imputed)	N
1148	chr16	73829269	73829270	rs427576	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	16q22.3	intergenic	rs427576-C	0.43	4E-6	(EA-glucose response)	2.62	[1.5-3.74] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1148	chr16	73830475	73830476	rs417278	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q22.3	Intergenic	rs417278-T	0.566	3E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1148	chr16	73895045	73895046	rs4888010	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	16q22.3	NR	rs4888010-A	0.4644	7E-9		5.796	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1148	chr16	73899993	73899994	rs4888921	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q22.3	NR	rs4888921-?	NR	4E-6		0.0081513	[0.0047-0.0116] unit increase	Affymetrix [805426] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16q22.3	NR	rs1104608-C	0.4264	8E-12		0.017191948	[0.012-0.022] unit decrease	Affymetrix [10613246] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16q22.3	NR	rs1104608-C	0.418	4E-12		0.012959148	[0.0093-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	16q22.3	NR	rs1104608-C	0.425454	6E-9		0.0119033	[0.0079-0.0159] unit increase	Affymetrix [16583148] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	16q22.3	PSMD7	rs1104608-C	0.43	1E-14		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	16q22.3	LOC101928035	rs1104608-G	0.5739	2E-7		0.0054	[0.0034-0.0074] unit increase	Affymetrix [~ 7740000] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	16q22.3	PSMD7	rs1104608-C	0.426	2E-10		0.0163	[0.011-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	16q22.3	NR	rs1104608-C	0.425	3E-12		0.00948981	[0.0068-0.0122] unit decrease	NR [~ 9732723] (imputed)	N
1148	chr16	73912587	73912588	rs1104608	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	16q22.3	NR	rs1104608-C	0.425	1E-13		0.010974988	[0.0081-0.0139] unit decrease	NR [~ 10000000] (imputed)	N
1148	chr16	73915895	73915896	rs12446615	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	16q22.3	LOC101928035	rs12446615-A	0.4314	2E-6		0.0073	[0.0044-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
1148	chr16	73917298	73917298	rs374035142	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.3		rs374035142-?	NR	1E-11		0.0138308	[0.0097-0.018] unit increase	Affymetrix [20259828] (imputed)	N
1148	chr16	73922718	73922719	rs62041532	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	16q22.3	NR	rs62041532-G	0.212619	2E-10		0.0233361	[0.016-0.031] unit increase	Affymetrix [16577424] (imputed)	N
1149	chr16	73996606	73996607	rs2189609	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Energy expenditure (24h)	419 Pima Indian ancestry individuals	NA	16q22.3	LOC100506172, LOC101928035	rs2189609-C	0.65	6E-6		51.241184	[29.12-73.36] kcal/day decrease	Affymetrix [491265]	N
1149	chr16	74025073	74025074	rs117426660	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	16q22.3	NR	rs117426660-G	0.007336	2E-6		0.8527	[0.51-1.2] unit decrease	Illumina [10677593] (imputed)	N
1150	chr16	74076251	74076252	rs2716601	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	16q22.3	LOC441506	rs2716601-?	NR	1E-6	(TT vs. not TT)			Illumina [856627]	N
1150	chr16	74079025	74079026	rs181167431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.3	Intergenic	rs181167431-A	1.0	1E-7	(AA)	0.541	unit increase	Illumina [NR] (imputed)	N
1150	chr16	74079025	74079026	rs181167431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q22.3	Intergenic	rs181167431-A	1.0	1E-6	(AA)	2.522	NR unit increase	Illumina [NR] (imputed)	N
1150	chr16	74087813	74087814	rs2716579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q22.3		rs2716579-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1150	chr16	74087813	74087814	rs2716579	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q22.3		rs2716579-?	NR	3E-27		0.0263894	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1150	chr16	74093490	74093491	rs12925864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q22.3		rs12925864-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1150	chr16	74142412	74142413	rs9929242	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	16q23.1	RFWD3	rs9929242-A	0.471172	3E-8		5.57	z score decrease	NR [10847151] (imputed)	N
1150	chr16	74167593	74167594	rs12103229	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	16q23.1	intergenic	rs12103229-?	NR	2E-8		0.0138449	[0.009-0.0186] unit increase	Affymetrix [25921788] (imputed)	N
1150	chr16	74171972	74171973	rs1012089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q23.1		rs1012089-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1150	chr16	74171972	74171973	rs1012089	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	16q23.1	AC009120.4	rs1012089-C	0.4752	2E-10		0.192	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1151	chr16	74229991	74229992	rs200279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q23.1		rs200279-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1152	chr16	74445631	74445632	rs150933152	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	16q23.1	CLEC18B	rs150933152-T	0.072	8E-18		0.42	[0.33-0.52] unit decrease	Affymetrix [339439]	N
1153	chr16	74499045	74499046	rs9937943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	16q23.1	GLG1	rs9937943-C	0.2195	5E-10		0.02684285	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1153	chr16	74552126	74552127	rs8046036	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	16q23.1	NR	rs8046036-?	NR	5E-6		0.1308	[0.075-0.187] unit increase	NR [13958389] (imputed)	N
1153	chr16	74567074	74567075	rs71391092	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q23.1	NR	rs71391092-C	NR	8E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1154	chr16	74589191	74589192	rs9806812	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q23.1	GLG1	rs9806812-A	0.284	5E-8		0.0072	[0.0047-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q23.1		rs12927351-A	NR	2E-10		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q23.1	GLG1	rs12927351-A	0.198168	5E-9		0.01617299	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16q23.1	GLG1	rs12927351-A	0.198149	3E-9		0.016574107	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q23.1	NR	rs12927351-A	0.198803	6E-11		0.015097	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs12927351-A	0.173155	3E-17				Affymetrix, Illumina [23114412] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q23.1	NR	rs12927351-A	0.198578	3E-19		0.021608	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q23.1	NR	rs12927351-A	0.198164	2E-10		0.016266	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1154	chr16	74596617	74596618	rs12927351	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q23.1	GLG1	rs12927351-A	0.1981	2E-15		0.03551919	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1154	chr16	74597757	74597758	rs36026517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q23.1	GLG1	rs36026517-C	0.198161	3E-16		0.022666313	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr16	74597757	74597758	rs36026517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q23.1	GLG1	rs36026517-C	0.198149	4E-16		0.022626419	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1154	chr16	74597757	74597758	rs36026517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q23.1		rs36026517-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1154	chr16	74601485	74601486	rs12924604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q23.1	GLG1	rs12924604-A	0.197701	2E-32		0.032747865	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr16	74601485	74601486	rs12924604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q23.1	GLG1	rs12924604-A	0.197722	2E-11		0.018658157	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr16	74601485	74601486	rs12924604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs12924604-A	0.167814	9E-11				Affymetrix, Illumina [23467995] (imputed)	N
1154	chr16	74601485	74601486	rs12924604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q23.1	NR	rs12924604-A	0.19818	8E-13		0.017272	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1154	chr16	74601485	74601486	rs12924604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q23.1	GLG1	rs12924604-A	0.1979	6E-14		0.03349513	[0.025-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1154	chr16	74615576	74615577	rs553399706	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	16q23.1	NR	rs553399706-A	6.3E-4	1E-8		1.064	[0.7-1.43] unit increase	Affymetrix [10972371] (imputed)	N
1154	chr16	74637010	74637011	rs7200247	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	16q23.1	GLG1	rs7200247-G	NR	2E-6		0.132	[0.077-0.187] unit decrease	Illumina [5527232] (imputed)	N
1154	chr16	74658429	74658430	rs4500770	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q23.1	RFWD3	rs4500770-A	0.637193	4E-8		0.00782096	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
1154	chr16	74664742	74664743	rs7193541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q23.1		rs7193541-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1154	chr16	74664742	74664743	rs7193541	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	16q23.1	RFWD3	rs7193541-T	0.585	5E-12		1.13	[NR]	Illumina [at least 7182761] (imputed)	N
1154	chr16	74668472	74668473	rs9929496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q23.1		rs9929496-A	NR	2E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1154	chr16	74670457	74670458	rs4888262	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	16q23.1	RFWD3	rs4888262-T	0.47	6E-11		1.2048193	[1.14-1.28]	Illumina [9210350] (imputed)	N
1154	chr16	74670457	74670458	rs4888262	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	16q23.1	RFWD3	rs4888262-?	0.5	7E-12		1.18	[1.13-1.23]	Illumina [at least 371504] (imputed)	N
1154	chr16	74670457	74670458	rs4888262	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	16q23.1	RFWD3, GLG1, MLKL	rs4888262-C	0.458	5E-12		1.26	[1.18-1.34]	Illumina [NR]	N
1154	chr16	74680073	74680074	rs62053580	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	16q23.1	RFWD3	rs62053580-G	0.17	4E-8		0.039	[0.025-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1154	chr16	74694057	74694058	rs7201320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q23.1		rs7201320-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1154	chr16	74694115	74694116	rs577000384	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16q23.1	NR	rs577000384-?	NR	3E-6		1.37597	[0.8-1.95] unit increase	NR [13958389] (imputed)	N
1154	chr16	74707351	74707352	rs148019601	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MLKL	rs148019601-?	NR	4E-11	(female)	0.630071	[NR] unit increase	Affymetrix [NR] (imputed)	N
1155	chr16	74735694	74735695	rs2057805	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.1	NR	rs2057805-?	NR	3E-9				Affymetrix [NR]	N
1155	chr16	74756451	74756452	rs739975	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	16q23.1		rs739975-A	NR	5E-6		7.3457	[4.27-10.42] unit increase	Illumina [NR] (imputed)	N
1155	chr16	74772797	74772798	rs2240255	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	16q23.1	FA2H	rs2240255-T	0.25	6E-6		1.34	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
1156	chr16	74860555	74860556	rs16947526	25383866	Kirkpatrick RM	2014-11-10	PLoS One	Results of a "GWAS plus:" general cognitive ability is substantially heritable and massively polygenic.	General cognitive ability	7,100 European ancestry individuals	NA	16q23.1	FA2H	rs16947526-?	NR	1E-6				Illumina [2546647] (imputed)	N
1156	chr16	74876111	74876112	rs79011090	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	16q23.1	NR	rs79011090-T	0.01	8E-6		1.59	[1.39-1.79]	Illumina [8468885] (imputed)	N
1156	chr16	74881819	74881820	rs16948255	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	16q23.1	WDR59	rs16948255-?	7.1E-4	9E-6				Illumina [308166]	N
1156	chr16	74881819	74881820	rs16948255	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	16q23.1	intergenic	rs16948255-?	NR	1E-6	(progression)			Illumina [NR]	N
1156	chr16	74907649	74907650	rs1051432	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.1	NR	rs1051432-?	NR	3E-212				Affymetrix [NR]	N
1156	chr16	74951513	74951514	rs143370787	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	16q23.1	NR	rs143370787-G		2E-6		0.3116	[0.18-0.44] SD units increase	NR [10700000] (imputed)	N
1157	chr16	74978617	74978618	rs2042415	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	WDR59	rs2042415-A	0.146	8E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1157	chr16	74978617	74978618	rs2042415	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	WDR59	rs2042415-A	0.146	8E-6	(Fat mass deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1157	chr16	74978617	74978618	rs2042415	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	WDR59	rs2042415-A	0.146	5E-6	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
1157	chr16	74978617	74978618	rs2042415	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	WDR59	rs2042415-A	0.146	3E-6	(Energy storage )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1157	chr16	74984724	74984725	rs56076527	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	16q23.1	WDR59	rs56076527-?	NR	3E-6		0.017	[0.0098-0.0242] unit decrease	Illumina [5527232] (imputed)	N
1157	chr16	74986484	74986485	rs9935937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WDR59	rs9935937-C	0.911	4E-6	(AA)	0.027	unit decrease	Illumina [NR] (imputed)	N
1157	chr16	74994651	74994652	rs59914217	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	16q23.1	NR	rs59914217-?		4E-6		1.76	[1.38-2.25]	Illumina [539473] (imputed)	N
1157	chr16	75017512	75017513	rs113400434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.1		rs113400434-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1158	chr16	75167578	75167579	rs7195303	23665963	Dubinsky MC	2013-05-09	Inflamm Bowel Dis	Multidimensional prognostic risk assessment identifies association between IL12B variation and surgery in Crohn's disease.	Crohn's disease (time to surgery)	983 European ancestry cases	NA	16q23.1	LDHD, BCAR1, ZHP1, CTRB1/2, ZNRF1	rs7195303-G	NR	9E-6		2.1	[1.5-2.8]	Illumina [484724]	N
1158	chr16	75173297	75173298	rs71392694	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.1	RP11-252E2.2	rs71392694-T	NR	2E-9		0.0187049	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1158	chr16	75181578	75181579	rs8053032	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	16q23.1	NR	rs8053032-G	NR	5E-6		0.9548	unit decrease	NR [9015039] (imputed)	N
1158	chr16	75182088	75182089	rs11648221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.1	ZFP1	rs11648221-C	0.622186	2E-10		0.014482784	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1158	chr16	75185763	75185764	rs9939124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q23.1	NR	rs9939124-T	0.306976	4E-16		0.016734	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1158	chr16	75204324	75204325	rs12930876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q23.1		rs12930876-T	NR	1E-16		0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1158	chr16	75204442	75204443	rs12935567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q23.1		rs12935567-C	NR	2E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1158	chr16	75204442	75204443	rs12935567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q23.1	ZFP1	rs12935567-C	0.559442	4E-13		0.016152972	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1158	chr16	75205212	75205213	rs17673793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs17673793-G	0.267691	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
1158	chr16	75205212	75205213	rs17673793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q23.1	NR	rs17673793-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1158	chr16	75211088	75211089	rs75840288	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	16q23.1	NR	rs75840288-C		8E-6		0.5053	[0.28-0.73] SD units decrease	NR [10700000] (imputed)	N
1158	chr16	75211346	75211347	rs11645649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.1		rs11645649-?	NR	9E-25				NR [~ 8900000] (imputed)	N
1158	chr16	75222005	75222006	rs6564219	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16q23.1	RP11-331F4.1, ZFP1, CTRB2, CTRB1, BCAR1	rs6564219-?		5E-6		1.3058239	[1.18-1.40]	Illumina [9389922] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNLIPRP1	5,366 Icelandic ancestry individuals	NA	16q23.1		rs72802342-A	0.06506	3E-61		0.626472	[0.55-0.7] unit decrease	Illumina [7506463] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	16q23.1	CTRB2	rs72802342-?	NR	8E-15		0.111	NR L increase	Affymetrix [9390170] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	16q23.1	CTRB1/BCAR1	rs72802342-A		6E-10		0.2877386	[0.2-0.38] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q23.1	NR	rs72802342-C	0.9206	6E-38		0.1154	[0.098-0.133] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q23.1	NR	rs72802342-A	0.0764647	1E-9		0.0795549	[0.054-0.105] unit increase	Affymetrix [17914406] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q23.1	BCAR1	rs72802342-C	0.9231	4E-32		1.17	[1.14-1.20]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	CTRB2	rs72802342-A	0.083	9E-20	(Carboxypeptidase B, CPB1.6356.3.3)	0.41	[0.31-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
1158	chr16	75234871	75234872	rs72802342	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	16q23.1	CTRB2, CTRB1, BCAR1	rs72802342-?	NR	5E-12	(EA)	1.2658228		Illumina [12023830] (imputed)	N
1159	chr16	75236762	75236763	rs55993634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS2	5,364 Icelandic ancestry individuals	NA	16q23.1		rs55993634-G	0.0678	1E-17		0.322007	[0.25-0.4] unit decrease	Illumina [7506463] (imputed)	N
1159	chr16	75236762	75236763	rs55993634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPB1	5,363 Icelandic ancestry individuals	NA	16q23.1		rs55993634-G	0.0678	2E-30		0.430461	[0.36-0.5] unit decrease	Illumina [7506463] (imputed)	N
1159	chr16	75236762	75236763	rs55993634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	CTRB2	rs55993634-G	0.094	1E-14	(Inactive pancreatic lipase-related protein 1, PNLIPRP1.6627.25.3)	0.33	[0.25-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
1159	chr16	75239186	75239187	rs543099777	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q23.1	CTRB2	rs543099777-A	0.1822	2E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1159	chr16	75242011	75242012	rs889512	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	16q23.1		rs889512-G	NR	1E-11		0.1104	[0.078-0.142] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1159	chr16	75242011	75242012	rs889512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q23.1	CTRB2	rs889512-C	0.8807	3E-8	(EA, women)	0.0506	[0.033-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr16	75242011	75242012	rs889512	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q23.1	CTRB2	rs889512-?	0.8807	1E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr16	75242866	75242867	rs9928842	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16q23.1	CTRB2, CTRB1, BCAR1, ZFP1	rs9928842-?		8E-7		1.3368984	[1.20-1.50]	Illumina [9389922] (imputed)	N
1159	chr16	75243656	75243657	rs72802358	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	16q23.1	CTRB2	rs72802358-C	0.1004	7E-9		0.11240431	[0.074-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
1159	chr16	75243771	75243772	rs77258096	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	16q23.1	CTRB1	rs77258096-A	0.101383461593617	2E-18		0.1171	[0.091-0.143] unit decrease	NR [5035015] (imputed)	N
1159	chr16	75243771	75243772	rs77258096	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	CTRB2	rs77258096-A	0.112	8E-13	(Trypsin-2, PRSS2.5034.79.1)	0.28	[0.2-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1159	chr16	75245936	75245937	rs66502159	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	16q23.1	CTRB2	rs66502159-T	0.100215	4E-8		0.05124117	[0.033-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1159	chr16	75245936	75245937	rs66502159	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		16q23.1	BCAR1	rs66502159-C	NR	1E-7		1.1488943		Affymetrix, Illumina [1918233] (imputed)	N
1159	chr16	75245946	75245947	rs117132064	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	NR	rs117132064-A	0.026	1E-52	(Chymotrypsinogen B, CTRB1.5671.1.3)	1.19	[1.03-1.35] unit increase	Affymetrix [10572788] (imputed)	N
1159	chr16	75246034	75246035	rs72802365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q23.1		rs72802365-C	NR	1E-15		0.1168	[0.088-0.145] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1159	chr16	75246034	75246035	rs72802365	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q23.1	NR	rs72802365-G	0.928	1E-40		0.1074	[0.092-0.123] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1159	chr16	75246034	75246035	rs72802365	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	16q23.1		rs72802365-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q23.1	NR	rs7202877-G	NR	7E-10		0.0256	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q23.1	CTRB1/2	rs7202877-G	0.1034	5E-10	(EA)	0.1064	[0.073-0.14] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q23.1	CTRB1/2	rs7202877-G	0.1034	4E-6		0.055	[0.031-0.079] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	16q23.1	BCAR1	rs7202877-T	NR	7E-8	(men)	1.15	[1.09-1.20]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	16q23.1	BCAR1	rs7202877-T	0.890915967077822	4E-8		1.12	[1.07-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1159	chr16	75247244	75247245	rs7202877	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	16q23.1	intergenic	rs7202877-G	0.10	3E-15		1.28	[1.17-1.41]	Affymetrix, Illumina [841622] (imputed)	N
1159	chr16	75247390	75247391	rs7202844	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	16q23.1	intergenic	rs7202844-G	0.087	2E-20		1.411		Illumina [252970]	N
1159	chr16	75247643	75247644	rs7202566	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.1	CTRB2	rs7202566-A	0.79984375	6E-235	(CTRB2, 5648_28_3)	0.94491976	[0.89-1] unit decrease	Illumina [> 1000000] (imputed)	N
1159	chr16	75251551	75251554	rs147630228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q23.1		rs147630228-C	NR	2E-11		0.0277	[0.02-0.036] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1159	chr16	75252326	75252327	rs8056814	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	16q23.1	BCAR1	rs8056814-A	0.07	3E-19		1.32		Illumina [135870]	N
1159	chr16	75254888	75254889	rs8055167	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16q23.1	CTRB1, BCAR1, CTRB2, ZFP1	rs8055167-?		4E-9		1.352448	[1.23-1.50]	Illumina [9389922] (imputed)	N
1159	chr16	75255216	75255217	rs8051363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTRB2	5,364 Icelandic ancestry individuals	NA	16q23.1		rs8051363-A	0.2631	1E-159		0.54973	[0.51-0.59] unit decrease	Illumina [7506463] (imputed)	N
1159	chr16	75255216	75255217	rs8051363	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.1	NR	rs8051363-G	0.7434375	3E-42	(CTRB2, 5648_28_3)	0.38285217	[0.33-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1159	chr16	75255216	75255217	rs8051363	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.1	NR	rs8051363-G	0.7434375	2E-81	(CTRB1, 5671_1_3)	0.52422833	[0.47-0.58] unit increase	Illumina [> 1000000] (imputed)	N
1159	chr16	75255216	75255217	rs8051363	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.1	NR	rs8051363-G	0.7434375	1E-10	(PNLIPRP1, 6627_25_3)	0.18291777	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1159	chr16	75255216	75255217	rs8051363	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	CTRB1	rs8051363-G	0.704	2E-157	(Chymotrypsinogen B, CTRB1.5671.1.3)	0.65	[0.61-0.69] unit increase	Affymetrix [10572788] (imputed)	N
1159	chr16	75263660	75263661	rs7190458	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	16q23.1	BCAR1	rs7190458-A	0.04	1E-11		1.36	[1.27-1.44]	Illumina [11381182] (imputed)	N
1159	chr16	75263660	75263661	rs7190458	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	16q23.1	ZFP1, CTRB1, CFDP1, TMEM170A, CHST6, CHST5, TMEM231, GABARAPL2, ADAT1, KARS, TERF21P, LDHD, BCAR1, CTRB2, FA2H, WDR59, ZNFR1	rs7190458-A	0.039	1E-10		1.46	[1.30-1.65]	Illumina [608202]	N
1159	chr16	75268244	75268245	rs4888362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q23.1	NR	rs4888362-C	0.798	6E-130	(Chymotrypsinogen B, CTRB1.5671.1.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
1159	chr16	75276774	75276775	rs1035539	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16q23.1	BCAR1, CTRB2, CFDP1, CTRB1	rs1035539-?		1E-7		1.2825446	[1.18-1.40]	Illumina [9389922] (imputed)	N
1159	chr16	75289941	75289942	rs147424513	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTRB2	5,364 Icelandic ancestry individuals	NA	16q23.1		rs147424513-A	0.02661	3E-57		0.941352	[0.83-1.06] unit increase	Illumina [7506463] (imputed)	N
1159	chr16	75302978	75302979	rs11649684	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	16q23.1	BCAR1, CFDP1, CTRB1, CTRB2	rs11649684-?		8E-7		1.3197836	[1.19-1.50]	Illumina [9389922] (imputed)	N
1159	chr16	75303443	75303444	rs7188857	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	16q23.1	BCAR1	rs7188857-A	0.76391	4E-6		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1159	chr16	75304365	75304366	rs2865827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q23.1		rs2865827-G	NR	6E-9		0.0537	[0.036-0.072] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1159	chr16	75304365	75304366	rs2865827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	16q23.1		rs2865827-G	NR	3E-9		0.0485	[0.033-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1159	chr16	75304810	75304811	rs7195324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q23.1		rs7195324-T	0.54991766	2E-9		0.07209707	[0.049-0.096] unit increase	Illumina [13427711] (imputed)	N
1159	chr16	75304956	75304957	rs12928974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q23.1		rs12928974-T	NR	1E-9		0.0515	[0.035-0.068] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1159	chr16	75304956	75304957	rs12928974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q23.1		rs12928974-T	NR	1E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1159	chr16	75306401	75306402	rs999675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	16q23.1		rs999675-T	0.551148444	4E-12		0.05893602	[0.042-0.076] unit increase	Illumina [13429980] (imputed)	N
1159	chr16	75306401	75306402	rs999675	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	16q23.1		rs999675-T	0.551148444	2E-9		0.04776263	[0.032-0.063] unit increase	Illumina [13429980] (imputed)	N
1159	chr16	75306401	75306402	rs999675	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	16q23.1	BCAR1, CFDP1	rs999675-?	NR	1E-12		0.0704542	[0.051-0.09] unit increase	Illumina [19707525] (imputed)	N
1159	chr16	75312022	75312023	rs11641308	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	16q23.1	BCAR1	rs11641308-T	0.346035	1E-9		0.020298	[0.014-0.027] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1159	chr16	75312547	75312548	rs11646044	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	16q23.1	BCAR1, RP11-252K23.2	rs11646044-T	0.5538	5E-11		0.149	[0.1-0.19] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
1159	chr16	75313381	75313384	rs146759980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q23.1		rs146759980-C	NR	5E-18		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1159	chr16	75313381	75313384	rs146759980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q23.1		rs146759980-C	NR	3E-20		0.0168	[0.013-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1159	chr16	75313484	75313485	rs4888372	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	16q23.1	LOC105371345	rs4888372-?	NR	5E-9		0.03632925	NR unit increase	Affymetrix [464137]	N
1159	chr16	75314837	75314838	rs10781976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q23.1		rs10781976-T	NR	9E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1159	chr16	75314837	75314838	rs10781976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q23.1		rs10781976-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1159	chr16	75325932	75325933	rs1011121	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	16q23.1	CFDP1	rs1011121-G	NR	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix [9304965] (imputed)	N
1159	chr16	75328307	75328308	rs11640018	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	16q23.1	NR	rs11640018-G	0.52	6E-7		1.2345679	[NR]	Illumina [747089]	N
1159	chr16	75331043	75331044	rs11643209	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	16q23.1	CFDP1	rs11643209-T	0.42	2E-12		0.339	[0.24-0.44] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1159	chr16	75331177	75331178	rs11646852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q23.1		rs11646852-A	NR	9E-11		0.0321	[0.022-0.042] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1159	chr16	75332040	75332041	rs4888378	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16q23.1	CFDP1	rs4888378-A	0.416	6E-15		0.0439	[0.033-0.055] unit decrease	NR [8041861] (imputed)	N
1159	chr16	75335405	75335406	rs9922008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	16q23.1		rs9922008-C	NR	1E-9		0.0362	[0.025-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1159	chr16	75340230	75340231	rs4888379	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	16q23.1	CFDP1	rs4888379-T	0.58	6E-21		1.1	[1.08-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
1159	chr16	75347940	75347941	rs8057535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	16q23.1		rs8057535-T	NR	1E-8		0.0585	[0.038-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1160	chr16	75377513	75377514	rs9939080	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	16q23.1	NR	rs9939080-?	NR	1E-6			[NR]	Illumina [5779266] (imputed)	N
1160	chr16	75387532	75387533	rs3851738	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	16q23.1	NR	rs3851738-?	NR	3E-19				NR [up to 7000000]	N
1160	chr16	75387532	75387533	rs3851738	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	16q23.1	CFDP1	rs3851738-C	0.6	2E-8		1.05	[1.03-1.07]	Affymetrix [9061845] (imputed)	N
1160	chr16	75389754	75389755	rs4888387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q23.1		rs4888387-G	NR	5E-17		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1160	chr16	75389754	75389755	rs4888387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs4888387-G	0.576265	7E-26				Affymetrix, Illumina [24588908] (imputed)	N
1160	chr16	75390315	75390316	rs2865531	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	16q23.1	CFDP1	rs2865531-?	NR	2E-8	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
1160	chr16	75390315	75390316	rs2865531	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q23.1	CFDP1	rs2865531-T	0.42	2E-11	(FEV1/FVC)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1160	chr16	75393351	75393352	rs17696696	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	16q23.1	CFDP1	rs17696696-G	0.59	3E-10		0.016	[0.01-0.022] cm decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1160	chr16	75396990	75396991	rs1364077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q23.1	NR	rs1364077-T	0.593103	3E-23		0.018538	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1160	chr16	75404973	75404974	rs8057203	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	16q23.1	CFDP1	rs8057203-C	0.58	4E-8		1.04	[1.03-1.06]	Illumina [5167567] (imputed)	N
1160	chr16	75406417	75406418	rs397691364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	16q23.1		rs397691364-G	NR	4E-12		0.0591	[0.042-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1160	chr16	75411444	75411445	rs11858992	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	16q23.1	CFDP1	rs11858992-A	0.4037	3E-32		0.0303	[0.025-0.035] unit increase	Affymetrix [19819130] (imputed)	N
1160	chr16	75411444	75411445	rs11858992	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q23.1	CFDP1	rs11858992-A	0.4037	5E-55		0.038	[0.033-0.043] unit increase	Affymetrix [19819130] (imputed)	N
1160	chr16	75411444	75411445	rs11858992	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16q23.1	CFDP1	rs11858992-A	0.4037	5E-21		0.0224	[0.018-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1160	chr16	75415340	75415341	rs1549306	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	16q23.1	CFDP1, TMEM170A	rs1549306-?	NR	3E-11				Affymetrix [up to 7325140] (imputed)	N
1160	chr16	75415830	75415831	rs4146810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	16q23.1		rs4146810-G	NR	7E-10		0.0487	[0.033-0.064] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1160	chr16	75424109	75424110	rs766522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q23.1		rs766522-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1160	chr16	75428449	75428450	rs192422186	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	16q23.1	NR	rs192422186-?	NR	4E-6		0.1473	[0.085-0.21] unit increase	Illumina [~ 7800000] (imputed)	N
1160	chr16	75432686	75432686	rs113309773	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	16q23.1	CFDP1, TMEM170A	rs113309773-?	0.46	9E-11		0.1259	[0.088-0.164] unit decrease	Affymetrix, Illumina [8578107] (imputed)	N
1160	chr16	75432823	75432824	rs4888408	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	16q23.1	NR	rs4888408-?	NR	4E-39				NR [up to 7000000]	N
1160	chr16	75432823	75432824	rs4888408	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	16q23.1	NR	rs4888408-?	NR	1E-41				NR [up to 7000000]	N
1160	chr16	75437185	75437186	rs7184525	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	16q23.1	RP11-252K23.2, BCAR1	rs7184525-A	0.453	6E-15		0.138	[0.10-0.17] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
1160	chr16	75442142	75442143	rs8046696	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16q23.1	CFDP1	rs8046696-?	NR	1E-25		0.0523486	[0.043-0.062] unit increase	Illumina [4804024] (imputed)	N
1160	chr16	75442142	75442143	rs8046696	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	16q23.1	CFDP1	rs8046696-T	0.4311	2E-16		0.0479	[0.037-0.059] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1160	chr16	75442143	75442144	rs8046697	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or coronary artery disease (pleiotropy)	12,550 European and unknown ancestry chronic pulmonary obstructive disease cases, 60,801 European and unknown ancestry coronary artery disease cases, 169,872 European and unknown ancestry controls	NA	16q23.1	BCAR1, CFDP1, CHST6, CTRB1, CTRB2, LOC100506281, TMEM170A	rs8046697-?	NR	4E-8				NR [up to 8619474] (imputed)	N
1160	chr16	75442144	75442144	rs200914569	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	16q23.1	CFDP1	rs200914569-?	NR	6E-8		1.0449321	[1.03-1.06]	Illumina [13763073] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16q23.1	CFDP1	rs4888411-T	0.404043	2E-8		0.03477938	[0.023-0.047] unit decrease	Affymetrix [7288503] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?	NR	1E-18				Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?	NR	1E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?	NR	2E-18				Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?		4E-6	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?		2E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?	NR	7E-8				Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75443182	75443183	rs4888411	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	16q23.1	LDHD, CFDP1, TMEM231, TERF2IP	rs4888411-?	NR	2E-7				Affymetrix, Illumina [18800000] (imputed)	N
1160	chr16	75444571	75444572	rs35261357	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.1	CFDP1	rs35261357-C		8E-12		0.265	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1160	chr16	75444571	75444572	rs35261357	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.1	CFDP1	rs35261357-C		6E-17		0.216	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1160	chr16	75462054	75462055	rs12930452	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q23.1	NR	rs12930452-A	0.41	2E-9		0.9	[0.88-0.93]	Affymetrix [9886854] (imputed)	N
1160	chr16	75462054	75462055	rs12930452	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q23.1	NR	rs12930452-A	0.41	1E-16			[NR]	Affymetrix [9886854] (imputed)	N
1160	chr16	75462054	75462055	rs12930452	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	16q23.1	NR	rs12930452-A	0.41	2E-9		0.9	[0.87-0.93]	Affymetrix [9886854] (imputed)	N
1160	chr16	75462054	75462055	rs12930452	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	16q23.1	NR	rs12930452-A	0.41	1E-9		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
1160	chr16	75462054	75462055	rs12930452	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q23.1	CFDP1	rs12930452-A	0.422	1E-15		0.052	[0.038-0.066] unit decrease	Affymetrix [7947838] (imputed)	N
1160	chr16	75462997	75462998	rs4888420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q23.1		rs4888420-?	NR	1E-75				NR [~ 8900000] (imputed)	N
1160	chr16	75463011	75463012	rs12449170	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q23.1	NR	rs12449170-C	0.41	9E-16		0.9	[0.88-0.93]	Affymetrix [9886854] (imputed)	N
1160	chr16	75463011	75463012	rs12449170	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	16q23.1	NR	rs12449170-C	0.41	6E-17			[NR]	Affymetrix [9886854] (imputed)	N
1160	chr16	75463011	75463012	rs12449170	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	16q23.1	NR	rs12449170-C	0.41	9E-16		0.9	[0.88-0.93]	Affymetrix [9886854] (imputed)	N
1160	chr16	75463011	75463012	rs12449170	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q23.1	CFDP1	rs12449170-T	0.557	1E-19		0.3022	[0.24-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
1160	chr16	75463011	75463012	rs12449170	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q23.1	CFDP1	rs12449170-T	0.5583	1E-19		0.2264	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1160	chr16	75467020	75467021	rs3743609	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	16q23.1	CFDP1	rs3743609-C	0.5907	4E-10		0.042	[0.028-0.056] unit decrease	Affymetrix [27624732] (imputed)	N
1160	chr16	75467020	75467021	rs3743609	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	16q23.1	CFDP1	rs3743609-C	0.6	4E-6		0.031	[0.017-0.045] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1160	chr16	75473154	75473155	rs7186831	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	16q23.1	CFDP1	rs7186831-A	0.43	1E-11		1.12	[1.08,1.16]	Affymetrix, Illumina [NR] (imputed)	N
1160	chr16	75480556	75480557	rs116981912	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q23.1	TMEM170A	rs116981912-G	0.0439063618663862	1E-7	(G_unclassified_F_Porphyromonadaceae_RNT)	0.379149	[0.24-0.52] unit increase	Illumina [7711310] (imputed)	N
1160	chr16	75483063	75483064	rs12933281	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	16q23.1	NR	rs12933281-C	0.54	7E-6		1.2195122	[NR]	Illumina [747089]	N
1160	chr16	75483131	75483132	rs12928036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.1		rs12928036-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1160	chr16	75493278	75493279	rs34539062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q23.1	RP11-77K12.1, TMEM170A, RP11-77K12.3	rs34539062-A	0.635661	5E-22		0.02268568	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr16	75493278	75493279	rs34539062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q23.1	RP11-77K12.1, TMEM170A, RP11-77K12.3	rs34539062-A	0.635638	1E-15		0.018812932	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr16	75493943	75493944	rs12932606	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q23.1		rs12932606-C	0.37	3E-10		6.3	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr16	75493943	75493944	rs12932606	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q23.1	NR	rs12932606-C	0.3611	2E-10				NR [9056863] (imputed)	N
1160	chr16	75497388	75497389	rs148965025	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	16q23.1		rs148965025-C	0.893319	8E-6		0.0187211	[0.01-0.027] unit increase	Illumina [13900000] (imputed)	N
1161	chr16	75506592	75506593	rs977987	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	16q23.1	CHST6, TMEM170A, CFDP1	rs977987-G	0.403	5E-10		1.146	[1.098-1.197]	Illumina [238825]	N
1161	chr16	75516533	75516534	rs3115960	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q23.1	BCAR1	rs3115960-G	0.37	3E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1161	chr16	75581821	75581822	rs2572094	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GABARAPL2	5,361 Icelandic ancestry individuals	NA	16q23.1		rs2572094-T	0.3389	7E-12		0.128225	[0.092-0.165] unit decrease	Illumina [7506463] (imputed)	N
1161	chr16	75583638	75583639	rs151269874	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Diarrhoea in darapladib-treated cardiovascular disease (time to event)	481 European ancestry cases	NA	16q23.1	RP11-77K12.8, TMEM231	rs151269874-T	0.0111	2E-9		4.18	[2.63-6.67]	Affymetrix, Illumina [9334585] (imputed)	N
1161	chr16	75593931	75593932	rs12599863	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	16q23.1	NR	rs12599863-G		4E-7		0.103	[NR] unit increase	Illumina [NR]	N
1161	chr16	75607377	75607378	rs12446652	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16q23.1	GABARAPL2	rs12446652-G	0.945131	6E-9		0.026602	[0.018-0.036] unit decrease	NR [16516521] (imputed)	N
1161	chr16	75615969	75615970	rs12449192	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.1	GABARAPL2	rs12449192-G	0.35984375	2E-8	(GABARAPL2, 12494_99_3)	0.13904463	[0.091-0.187] unit decrease	Illumina [> 1000000] (imputed)	N
1161	chr16	75620117	75620118	rs61537885	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q23.1	NR	rs61537885-C	0.037215	8E-9	(Conditioned on chr16:75766873)	0.04006256	[0.026-0.054] unit decrease	NR [~ 10000000] (imputed)	N
1162	chr16	75640516	75640517	rs61078946	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.1	Intergenic	rs61078946-A	0.8935	2E-8	(MTAG)	0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1162	chr16	75640520	75640521	rs60952428	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16q23.1		rs60952428-T	0.909	3E-8		0.019	[0.013-0.025] unit increase	Affymetrix [up to 90000000] (imputed)	N
1162	chr16	75676981	75676982	rs6564271	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	16q23.1	NR	rs6564271-?	NR	3E-6	(AA)	0.463443	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
1162	chr16	75690278	75690279	rs4888444	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q23.1		rs4888444-A	0.953	6E-15		0.023	[0.017-0.029] unit increase	NR [NR] (imputed)	N
1162	chr16	75690278	75690279	rs4888444	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16q23.1	TERF2IP	rs4888444-A	0.9479	2E-8		0.025578208	[0.017-0.034] unit increase	Affymetrix [11514654] (imputed)	N
1162	chr16	75690278	75690279	rs4888444	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16q23.1	NR	rs4888444-G	0.0406	9E-9		0.0212826	[0.014-0.029] unit increase	NR [9732723] (imputed)	N
1162	chr16	75690278	75690279	rs4888444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q23.1		rs4888444-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1163	chr16	75766872	75766873	rs117657830	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q23.1	NR	rs117657830-G	0.0417	3E-9		0.037759688	[0.025-0.05] unit decrease	NR [~ 10000000] (imputed)	N
1163	chr16	75875480	75875481	rs118028964	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q23.1	NR	rs118028964-A	0.0175	1E-12		0.0304165	[0.022-0.039] unit decrease	NR [9732723] (imputed)	N
1163	chr16	75876365	75876366	rs8061878	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	16q23.1		rs8061878-G	0.03292	8E-6		1.975	[1.466-2.661]	Affymetrix [7975321] (imputed)	N
1164	chr16	75917475	75917476	rs9935844	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	16q23.1	NR	rs9935844-T	0.1672	3E-7		0.5988	[0.37-0.83] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1164	chr16	75928804	75928805	rs72791317	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	TERF2IP	rs72791317-A	0.940249	3E-9	(-40 ms)	0.0720274	[0.048-0.096] unit increase	Affymetrix [10000000] (imputed)	N
1164	chr16	75940871	75940871	rs1177681540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q23.1	NR	rs1177681540-T	0.01742	1E-8	(TST)	1.022	NR unit increase	Illumina [1671387] (imputed)	N
1164	chr16	75941470	75941471	rs141896554	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16q23.1	RNA5SP430	rs141896554-A	0.988	4E-6		0.2696	[0.15-0.38] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1164	chr16	75991445	75991446	rs1948632	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	16q23.1	NR	rs1948632-?	0.04	8E-6		1.55	[1.30-1.90]	Affymetrix [> 333754] (imputed)	N
1164	chr16	75999880	75999881	rs74025622	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	16q23.1	LOC105371348, LOC105371349	rs74025622-G	0.028	5E-9				Illumina [5088365] (imputed)	N
1165	chr16	76062977	76062978	rs257832	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.1	NR	rs257832-?	NR	2E-9				Affymetrix [NR]	N
1165	chr16	76098541	76098542	rs569563414	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	16q23.1	NR	rs569563414-?	NR	1E-6		0.909073	[0.54-1.28] unit increase	NR [13958389] (imputed)	N
1165	chr16	76125309	76125310	rs364635	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q23.1	NR	rs364635-G	NR	1E-6		1.18057	[1.10359-1.26292]	Affymetrix [5734850] (imputed)	N
1165	chr16	76140691	76140692	rs12917862	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	16q23.1	NR	rs12917862-A	0.23445	3E-6		0.08852173	[0.052-0.125] unit decrease	Illumina [9469131] (imputed)	N
1166	chr16	76167486	76167487	rs553183422	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16q23.1	RP11-293N14.1	rs553183422-T	0.0149	6E-6		0.2608	[0.15-0.37] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1166	chr16	76169730	76169731	rs2288061	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	16q23.1	NR	rs2288061-G	0.1504	7E-6		0.0904	[0.051-0.13] unit decrease	Illumina [up to 1980188] (imputed)	N
1166	chr16	76170095	76170096	rs2288059	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	16q23.1	NR	rs2288059-T	0.8501	6E-6		0.0908	[0.051-0.13] unit increase	Illumina [up to 1980188] (imputed)	N
1166	chr16	76272439	76272440	rs56258633	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	16q23.1	NR	rs56258633-?	NR	7E-6		0.234178	[0.13-0.34] unit increase	NR [13958389] (imputed)	N
1166	chr16	76282983	76282984	rs76112945	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16q23.1	TERF2IP, CNTNAP4	rs76112945-T	0.1	8E-8	(African American)	0.73	[0.46-1] unit decrease	Illumina [up to 13042663] (imputed)	N
1167	chr16	76318541	76318542	rs7193230	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	16q23.1	CNTNAP4	rs7193230-?	NR	5E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1168	chr16	76450777	76450778	rs9931169	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	16q23.1	CNTNAP4	rs9931169-G	0.167	9E-6		0.034	[0.018-0.05] unit decrease	Illumina [7358575] (imputed)	N
1168	chr16	76458532	76458533	rs559636178	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q23.1	CNTNAP4	rs559636178-?		2E-10		1.3815	[0.96-1.81] unit increase	Illumina [31500000] (imputed)	N
1168	chr16	76459368	76459369	rs12919084	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q23.1	Intergenic	rs12919084-T	0.4454	4E-10	(MTAG)	0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr16	76463935	76463936	rs58296637	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q23.1	NR	rs58296637-?	NR	2E-8	(AA)	1.6165	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1168	chr16	76468132	76468133	rs4354968	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	16q23.1	CNTNAP4	rs4354968-A	0.5379	4E-9		0.01184849	[0.0079-0.0158] unit increase	Affymetrix [11514654] (imputed)	N
1168	chr16	76468132	76468133	rs4354968	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q23.1	NR	rs4354968-A	0.536	1E-9		0.00656621	[0.0044-0.0087] unit increase	NR [9732723] (imputed)	N
1168	chr16	76468132	76468133	rs4354968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q23.1	Intergenic	rs4354968-A	0.5378	2E-13	(MTAG)	0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr16	76468132	76468133	rs4354968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q23.1	Intergenic	rs4354968-T	0.4622	3E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1168	chr16	76468618	76468619	rs7184847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.1	Intergenic	rs7184847-C	0.4488	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr16	76473851	76473852	rs2221534	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q23.1	Intergenic	rs2221534-A	0.4451	3E-12	(MTAG)	0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1168	chr16	76480815	76480816	rs146896478	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	16q23.1	CNTNAP4	rs146896478-?		5E-6				NR [7405822] (imputed)	N
1168	chr16	76523937	76523938	rs16944472	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	16q23.1		rs16944472-?	NR	8E-7		0.774401	[0.67-0.88]	NR [674885]	N
1168	chr16	76524012	76524013	rs8058881	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	16q23.1	NR	rs8058881-C	0.223658	5E-8		0.04106597	[0.026-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1168	chr16	76524012	76524013	rs8058881	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	16q23.1	Intergenic	rs8058881-C	0.7433	4E-8		0.0183	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1168	chr16	76524012	76524013	rs8058881	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q23.1	NR	rs8058881-?	NR	7E-6		4.507	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1168	chr16	76528633	76528634	rs13338060	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	16q23.1	CNTNAP4	rs13338060-G	NR	6E-6		11.0966	[6.43-15.76] unit decrease	Illumina [6097251] (imputed)	N
1169	chr16	76566156	76566157	rs4485401	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	16q23.1	CNTNAP4	rs4485401-?	NR	2E-8	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
1169	chr16	76619805	76619806	rs12929322	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	16q23.1	CNTNAP4, AK057218	rs12929322-G	0.03	4E-6	(adjusted for severity)	1.75	[1.51-1.99]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1170	chr16	76693575	76693576	rs141447643	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	16q23.1	NR	rs141447643-T	0.037	5E-6		0.73	[0.42-1.04] unit increase	Illumina [9469131] (imputed)	N
1170	chr16	76735248	76735249	rs4887872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.1	NR	rs4887872-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1171	chr16	76826390	76826391	rs62047859	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	16q23.1	NR	rs62047859-A	0.03	9E-7		4.92	[NR] z score increase	Illumina [9009554] (imputed)	N
1171	chr16	76846265	76846266	rs113716969	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	16q23.1	NR	rs113716969-C	0.016	2E-6		0.473	[0.28-0.67] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1171	chr16	76848715	76848716	rs113092115	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	16q23.1	RP11-58C22.1, CTD-2336H13.2	rs113092115-T	0.0037	5E-6		0.3564	[0.2-0.51] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1171	chr16	76878861	76878862	rs13330107	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q23.1	NA	rs13330107-A	0.3564	1E-7		0.0095	[0.006-0.013] unit increase	NR [~ 27400000] (imputed)	N
1171	chr16	76878861	76878862	rs13330107	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Inattentive symptoms	930 European ancestry trios	NA	16q23.1	intergenic	rs13330107-?	NR	9E-6	(binary)			Perlegen [429981]	N
1171	chr16	76885064	76885065	rs34141129	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q23.1	NR	rs34141129-?	NR	6E-6		2.61	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1171	chr16	76890125	76890126	rs17679567	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	16q23.1	CNTNAP4	rs17679567-?	NR	9E-6	(Relative change in DAS28)			Illumina [486450]	N
1171	chr16	76895692	76895693	rs9673839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q23.1		rs9673839-G	NR	6E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1171	chr16	76895692	76895693	rs9673839	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q23.1	RP11-58C22.1	rs9673839-A	0.508934	2E-9		0.00830314	[0.0056-0.011] unit decrease	Affymetrix [12370749]	N
1171	chr16	76895692	76895693	rs9673839	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.1	NR	rs9673839-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1171	chr16	76895692	76895693	rs9673839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q23.1		rs9673839-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1172	chr16	76961174	76961175	rs903990	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	16q23.1		rs903990-T	0.3564	5E-6		0.7992		NR [11110260] (imputed)	N
1172	chr16	76969597	76969598	rs1982955	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	16q23.1	MON1B, CNTNAP4	rs1982955-?		4E-7	(IFN gamma response)			Illumina [NR]	N
1172	chr16	76993423	76993424	rs4430756	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q23.1	NR	rs4430756-T	0.117	6E-8		0.00909455	[0.0058-0.0124] unit decrease	NR [9732723] (imputed)	N
1172	chr16	77000004	77000005	rs9927410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.1	Intergenic	rs9927410-A	0.7566	5E-8	(MTAG)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1172	chr16	77007436	77007437	rs1995082	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	16q23.1	intergenic	rs1995082-T	0.865	2E-6		0.029	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1172	chr16	77042428	77042428	rs34344307	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	16q23.1		rs34344307-?	NR	1E-6	(endometrioid)	1.51		Illumina [11595112] (imputed)	N
1172	chr16	77054355	77054356	rs1390897	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	16q23.1	NR	rs1390897-G		8E-6		0.1092	[0.061-0.157] SD units increase	NR [10700000] (imputed)	N
1172	chr16	77061213	77061214	rs28655083	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	16q23.1	NR	rs28655083-?	NR	5E-7				Illumina [at least 7383741] (imputed)	N
1173	chr16	77077288	77077289	rs285006	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16q23.1	NR	rs285006-A	0.342184095469904	1E-8		0.0055097137	[0.0036-0.0074] unit increase	NR [NR]	N
1173	chr16	77077288	77077289	rs285006	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	16q23.1	NR	rs285006-A	0.342184095469904	3E-8		0.0086163385	[0.0056-0.0116] unit increase	NR [NR]	N
1173	chr16	77077288	77077289	rs285006	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	16q23.1	NR	rs285006-A	0.342184095469904	3E-8		0.005485909	[0.0035-0.0074] unit increase	NR [NR]	N
1173	chr16	77089707	77089708	rs285012	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	16q23.1	MON1B	rs285012-T	0.6254	1E-9		0.014829668	[0.01-0.02] unit decrease	Affymetrix [11515109] (imputed)	N
1173	chr16	77100088	77100089	rs285026	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	16q23.1	MON1B	rs285026-G	0.4297	2E-8		0.0138	[0.0089-0.0187] unit decrease	NR [NR]	N
1173	chr16	77100931	77100932	rs285027	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	16q23.1	CTD-2336H13.2, MON1B	rs285027-?	NR	9E-9			[NR]	NR [NR] (imputed)	N
1173	chr16	77137323	77137324	rs35322724	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q23.1	NR	rs35322724-A	0.5774	4E-16		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1173	chr16	77144742	77144743	rs145842949	30700811	Wigmore EM	2019-01-31	Pharmacogenomics J	Genome-wide association study of antidepressant treatment resistance in a population-based cohort using health service prescription data and meta-analysis with GENDEP.	Antidepressant treatment resistance (> 2 drugs prescribed)	250 European ancestry cases, 3,202 European ancestry controls, 109 cases, 668 controls	NA	16q23.1	MON1B	rs145842949-?		4E-7		2.42	[2.08-2.77]	NR [7120598] (imputed)	N
1173	chr16	77156986	77156987	rs182924987	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.1	NR	rs182924987-?	NR	5E-8				Illumina [7760689] (imputed)	N
1173	chr16	77168249	77168250	rs2342343	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	16q23.1	NR	rs2342343-A	0.305863	6E-6		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1173	chr16	77173306	77173307	rs143174845	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	16q23.1	NR	rs143174845-G	0.042	2E-6		0.7	[0.41-0.99] unit increase	Illumina [9469131] (imputed)	N
1173	chr16	77175702	77175703	rs12927360	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	16q23.1	NA	rs12927360-G	0.5797	2E-13	(Female)	1.0570824	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1174	chr16	77232745	77232746	rs72798545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q23.1		rs72798545-C	NR	4E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1174	chr16	77247503	77247504	rs11862987	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	16q23.1		rs11862987-T	0.1561	4E-6		1.582	[1.301-1.924]	Affymetrix [7975321] (imputed)	N
1174	chr16	77249143	77249144	rs113199002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16q23.1		rs113199002-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1174	chr16	77257612	77257613	rs72800029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q23.1		rs72800029-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1174	chr16	77261942	77261943	rs12449219	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.1	NR	rs12449219-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1174	chr16	77261942	77261943	rs12449219	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q23.1	NA	rs12449219-C	0.856	1E-10		0.0164	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1174	chr16	77310608	77310609	rs148077446	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	16q23.1	SYCE1L, ADAMTS18	rs148077446-?	NR	6E-6				Affymetrix [5045527] (imputed)	N
1174	chr16	77318110	77318111	rs111756027	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		16q23.1	ADAMTS18	rs111756027-C	NR	2E-6		0.11	[NR] unit decrease	Affymetrix, Illumina [at least 9551331] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q23.1		rs12921392-A	0.37	4E-45		14.1	z score increase	Affymetrix [9061022] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q23.1		rs12921392-A	0.37	2E-24		10.22	z score increase	Affymetrix [9061022] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q23.1		rs12921392-A	0.37	1E-27		10.9	z score increase	Affymetrix [9061022] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q23.1	NR	rs12921392-A	0.3821	1E-17				NR [9056863] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q23.1	NR	rs12921392-A	0.3821	1E-17				NR [9056863] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 21)	19,670 European ancestry individuals	NA	16q23.1		rs12921392-?	NR	9E-15				NR [9705931] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	16q23.1	PKDCC	rs12921392-?		3E-8				NR [7428630] (imputed)	N
1174	chr16	77320604	77320605	rs12921392	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	16q23.1	NR	rs12921392-A	0.4033	5E-8	(Entorhinal)	1.8072015	[1.16-2.46] unit increase	Affymetrix, Illumina [NR]	N
1174	chr16	77324440	77324441	rs3743748	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q23.1	ADAMTS18	rs3743748-?		3E-12				NR [7428630] (imputed)	N
1174	chr16	77327956	77327957	rs11640436	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	16q23.1	NR	rs11640436-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
1174	chr16	77328894	77328895	rs12935229	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	16q23.1	ADAMTS18	rs12935229-A	0.182	4E-6	(Recessive model)	1.495	[1.214-1.84]	Illumina [733202]	N
1174	chr16	77329640	77329641	rs7192208	22425255	Lopez LM	2012-03-15	Neurobiol Aging	A genome-wide search for genetic influences and biological pathways related to the brain's white matter integrity.	White matter integrity	535 European ancestry individuals	NA	16q23.1	ADAMTS18	rs7192208-G	0.11	2E-6		0.4832	[0.29-0.68] unit decrease	Illumina [542050]	N
1175	chr16	77342568	77342569	rs10514413	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	16q23.1	ADAMTS18, SYCE1L, VN2R10P, NUDT7	rs10514413-C	0.02	2E-7		2.12	[1.32-2.92] unit decrease	Illumina [8257341] (imputed)	N
1175	chr16	77401514	77401515	rs112141546	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	16q23.1	HOGA1	rs112141546-T	3.0E-4	1E-6		3.5		Affymetrix [at least 751455]	N
1175	chr16	77401514	77401515	rs112141546	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	16q23.1	ADAMTS18	rs112141546-T	3.0E-4	4E-10		3.3		Affymetrix [at least 751455]	N
1175	chr16	77421193	77421194	rs12598504	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12598504-A	0.833013	5E-17		0.0980248	[0.074-0.122] decrease	Affymetrix [11014269] (imputed)	N
1175	chr16	77428971	77428972	rs16945612	19249006	Xiong DH	2009-02-25	Am J Hum Genet	Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.	Bone mineral density	1,000 European ancestry individuals	4,925 European ancestry individuals, 350 Chinese ancestry hip fracture cases, 350 Chinese ancestry hip fracture controls, 2,955 Chinese ancestry individuals, 908 West African ancestry males	16q23.1	ADAMTS18	rs16945612-?		2E-8	(hip BMD)			Affymetrix [379319]	N
1175	chr16	77434587	77434588	rs188284312	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.1	NR	rs188284312-?	NR	2E-8				Illumina [7760689] (imputed)	N
1175	chr16	77434587	77434588	rs188284312	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.1	NR	rs188284312-?	NR	2E-8				Illumina [7760689] (imputed)	N
1175	chr16	77456243	77456244	rs12599182	29654602	Laville V	2018-04-13	Exp Dermatol	A Genome-Wide Association Study identifies new genes potentially associated with eyelid sagging.	Upper eyelid sagging severity	29 French ancestry individuals with grade 0-I sagging, 107 French ancestry individuals with grade II sagging, 192 French ancestry individuals with grade III sagging, 174 French ancestry individuals with grade IV-V sagging	NA	16q23.1	ADAMTS18	rs12599182-?	NR	3E-7		2.2727273	[1.64-3.03]	Illumina [795063]	N
1176	chr16	77469248	77469249	rs749754	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs749754-G	0.35608	4E-8		0.0513397	[0.033-0.07] decrease	Affymetrix [11014269] (imputed)	N
1176	chr16	77470288	77470289	rs4888630	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	16q23.1	NR	rs4888630-?	NR	4E-7				Illumina [at least 7383741] (imputed)	N
1176	chr16	77483277	77483278	rs117420992	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	16q23.1	NR	rs117420992-C	0.044	3E-7		0.73	[0.46-1] unit increase	Illumina [9469131] (imputed)	N
1176	chr16	77492426	77492427	rs35559328	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	ADAMTS18	rs35559328-C	0.633264	5E-8	(26 ms)	0.0306399	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1176	chr16	77492426	77492427	rs35559328	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	ADAMTS18	rs35559328-C	0.633264	4E-8	(18 ms)	0.0311827	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1176	chr16	77492426	77492427	rs35559328	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	ADAMTS18	rs35559328-C	0.633264	2E-8	(24 ms)	0.0323549	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1176	chr16	77492426	77492427	rs35559328	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	ADAMTS18	rs35559328-C	0.633264	2E-8	(20 ms)	0.032355	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1176	chr16	77492426	77492427	rs35559328	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.1	ADAMTS18	rs35559328-C	0.633264	1E-8	(22 ms)	0.0326462	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1176	chr16	77515429	77515430	rs72803831	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	16q23.1	NR	rs72803831-G	0.8875	2E-11		1.15	[1.1-1.19]	Affymetrix, Illumina [7072771] (imputed)	N
1176	chr16	77522910	77522911	rs17621854	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.1	MON1B	rs17621854-?	NR	6E-6	(UDP glucose; UDP galactose)	0.17292418	[0.098-0.248] unit increase	Affymetrix [at least 2500000] (imputed)	N
1176	chr16	77532438	77532439	rs55932951	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	16q23.1	NR	rs55932951-T		9E-10		0.13	[0.091-0.169] unit increase	NR [NR]	N
1176	chr16	77538002	77538003	rs12444539	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	16q23.1	ADAMTS18	rs12444539-?	NR	7E-13		0.1758	[0.13-0.22] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1176	chr16	77538002	77538003	rs12444539	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	16q23.1	ADMTS18	rs12444539-A	0.925	9E-13		0.175	[0.13-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1176	chr16	77545081	77545082	rs1493892	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	16q23.1		rs1493892-T	0.5	5E-6		0.12	[0.04-0.32]	Illumina [243345]	N
1176	chr16	77577843	77577844	rs75265191	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	16q23.1	ADAMTS18	rs75265191-G	0.93	3E-13				Affymetrix, Illumina [8002429] (imputed)	N
1176	chr16	77581853	77581854	rs7193466	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.1	NR	rs7193466-G	0.381155	6E-9		0.01867	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
1176	chr16	77591934	77591935	rs75828804	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	16q23.1	ADAMTS18, NUDT7	rs75828804-?	NR	3E-14		0.18	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1176	chr16	77594451	77594452	rs191151465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	Intergenic	rs191151465-C	0.999	5E-6	(AA)	2.215	NR unit increase	Illumina [NR] (imputed)	N
1177	chr16	77599438	77599439	rs76861960	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	16q23.1	NR	rs76861960-?	NR	8E-7		0.0592	[0.036-0.083] unit decrease	Illumina [~ 7800000] (imputed)	N
1177	chr16	77599910	77599911	rs78454115	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q23.1	ADAMTS18, NUDT7	rs78454115-G	0.929	2E-27		0.296	[0.24-0.35] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1177	chr16	77604380	77604381	rs75917780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q23.1		rs75917780-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1177	chr16	77611386	77611387	rs76953588	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	16q23.1		rs76953588-T	0.916203	9E-20		0.149685	[0.12-0.18] decrease	Affymetrix [11014269] (imputed)	N
1177	chr16	77611386	77611387	rs76953588	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q23.1	ADAMTS18, NUDT7	rs76953588-T	0.9155	1E-25		0.261	[0.21-0.31] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1177	chr16	77620058	77620059	rs393951	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	16q23.1	NR	rs393951-?	NR	3E-6		0.0437	[0.025-0.062] unit increase	Illumina [at least 560000] (imputed)	N
1177	chr16	77635694	77635695	rs116980813	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	16q23.1	NR	rs116980813-C	0.00959488	6E-6		1.12	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1177	chr16	77661731	77661732	rs280875	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	16q23.1	ADAMTS18, NUDT7	rs280875-T	NR	7E-13		0.0905	unit decrease	Illumina [15409056] (imputed)	N
1177	chr16	77682472	77682473	rs149208014	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	16q23.1	intergenic	rs149208014-?	NR	7E-6		35.7	[4.06-314.6]	Illumina [654642] (imputed)	N
1177	chr16	77704397	77704398	rs72788877	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72788877-G	0.770575	9E-9		0.0641819	[0.043-0.086] decrease	Affymetrix [11014269] (imputed)	N
1178	chr16	77782257	77782258	rs9319516	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect)	532 African American donors	250 African American donors	16q23.1	NUDT7	rs9319516-?	NR	2E-7		0.57	NR unit increase	Illumina [> 13000000] (imputed)	N
1178	chr16	77783579	77783580	rs4888671	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.1	NUDT7	rs4888671-A	0.152	7E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
1178	chr16	77856726	77856727	rs78974596	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	16q23.1	NR	rs78974596-T	0.1125	5E-6		0.021429654	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1179	chr16	77876762	77876763	rs9934540	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		16q23.1	VAT1L	rs9934540-?	0.03	4E-7		0.25	unit decrease	Illumina [NR] (imputed)	N
1179	chr16	77893915	77893916	rs116919355	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	16q23.1		rs116919355-?	NR	2E-6		0.428	[-2.50612-3.36212] unit increase	Affymetrix [6423076] (imputed)	N
1179	chr16	77916190	77916191	rs435746	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	16q23.1	NR	rs435746-?	NR	3E-6		1.283	[NR]	Affymetrix [722112]	N
1179	chr16	77917660	77917661	rs11647294	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	16q23.1	VAT1L	rs11647294-T	0.401	2E-6	(unadjusted)		[NR]	Illumina [625127]	N
1179	chr16	77954873	77954874	rs8057349	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	16q23.1	VAT1L	rs8057349-T	0.5508	8E-6		0.0315	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1179	chr16	77961258	77961259	rs7500920	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	16q23.1		rs7500920-C	0.1725	1E-5		1.457	[1.23299999999999-1.72099999999999]	Affymetrix [7975321] (imputed)	N
1180	chr16	78007469	78007470	rs429921	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16q23.1	VAT1L	rs429921-?	NR	1E-11		0.7758	[0.44-1.11] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr16	78017435	78017436	rs412464	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16q23.1	VAT1L	rs412464-?	NR	2E-10	(EA)	0.7352	[0.33-1.14] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr16	78017435	78017436	rs412464	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (1df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	16q23.1	VAT1L	rs412464-?	NR	9E-6	(EA)	2.124	[1.18-3.06] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1180	chr16	78041864	78041865	rs35409540	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	16q23.1	RP11-281J9.2	rs35409540-A	NR	7E-7		0.7278	NR	Illumina [up to 4495750] (imputed)	N
1180	chr16	78053642	78053643	rs2735413	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	16q23.1	CLEC3A	rs2735413-A	0.31	9E-7	(drinks/week)	0.158	[0.089-0.227] unit increase	Affymetrix [2500000] (imputed)	N
1180	chr16	78062056	78062057	rs150149068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q23.1		rs150149068-C	NR	9E-12		0.1322	[0.094-0.17] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1180	chr16	78062056	78062057	rs150149068	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q23.1		rs150149068-?	NR	8E-23		0.173526	[0.14-0.21] unit increase	NR [9800000] (imputed)	N
1180	chr16	78064532	78064533	rs141510764	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q23.1		rs141510764-?	NR	3E-9		0.23004	[0.15-0.31] unit increase	NR [9800000] (imputed)	N
1180	chr16	78076558	78076559	rs11150038	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	16q23.1	CLEC3A	rs11150038-G	0.944	1E-6	(opposite direction)	1.27	[1.15-1.39]	Illumina [up to 6000000] (imputed)	N
1180	chr16	78105802	78105803	rs60628344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.1		rs60628344-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1181	chr16	78156294	78156295	rs13339407	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q23.1	WWOX	rs13339407-?		9E-10				Affymetrix, Illumina [NR] (imputed)	N
1181	chr16	78159276	78159277	rs16947165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q23.1	WWOX	rs16947165-G	0.304238	9E-11		0.01563396	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr16	78159276	78159277	rs16947165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q23.1	NR	rs16947165-G	0.304174	7E-11		0.014079	[0.0098-0.0183] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1181	chr16	78169674	78169675	rs9929762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q23.1		rs9929762-A	0.5595	1E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1181	chr16	78171375	78171376	rs9937449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.1	Intergenic	rs9937449-T	0.5583	3E-13	(MTAG)	0.0096	[0.0071-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr16	78187137	78187138	rs1079572	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	16q23.1	WWOX	rs1079572-G	0.417	1E-8	(EA)	16.258	[10.70-21.82] ml increase	Affymetrix, Illumina [2762059] (imputed)	N
1181	chr16	78187902	78187903	rs12716850	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	16q23.1	WWOX	rs12716850-A	NR	1E-7	(FEV1, Ever-smoking)			NR [~ 2500000] (imputed)	N
1181	chr16	78188495	78188496	rs8056446	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	16q23.1	WWOX	rs8056446-A	NR	8E-8	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1181	chr16	78188737	78188738	rs12716852	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	16q23.1	WWOX	rs12716852-G	NR	2E-7	(FEV1)	0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1181	chr16	78207343	78207344	rs35255850	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	16q23.1	NR	rs35255850-?	NR	4E-7		3.91	[2.88-5.3]	Illumina [539000] (imputed)	N
1181	chr16	78214293	78214294	rs2042354	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q23.1		rs2042354-T	0.16	2E-12		7.06	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr16	78218462	78218463	rs62033985	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q23.1		rs62033985-T	0.17	2E-8		5.6	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr16	78218462	78218463	rs62033985	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q23.1	NR	rs62033985-T	0.196	6E-11				NR [9056863] (imputed)	N
1181	chr16	78218462	78218463	rs62033985	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q23.1	WWOX	rs62033985-?		4E-8				NR [7428630] (imputed)	N
1181	chr16	78218797	78218798	rs62033986	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q23.1		rs62033986-C	0.17	2E-10		6.37	z score increase	Affymetrix [9061022] (imputed)	N
1181	chr16	78218797	78218798	rs62033986	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 140)	19,670 European ancestry individuals	NA	16q23.1		rs62033986-?	NR	1E-10				NR [9705931] (imputed)	N
1181	chr16	78225632	78225633	rs2345443	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	16q23.1	WWOX	rs2345443-A	0.3114	2E-13		0.0199	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1181	chr16	78225632	78225633	rs2345443	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q23.1	WWOX	rs2345443-A	0.3114	1E-12		0.0181	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1181	chr16	78225632	78225633	rs2345443	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16q23.1	WWOX	rs2345443-A	0.3114	3E-18		0.0221	[0.017-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1181	chr16	78225632	78225633	rs2345443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q23.1		rs2345443-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1181	chr16	78243383	78243384	rs7500549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q23.1	Intergenic	rs7500549-T	0.4734	6E-10	(MTAG)	0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1181	chr16	78248236	78248237	rs200005647	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16q23.1	WWOX	rs200005647-T	0.238939	3E-8		0.0134701	[0.0086-0.0184] unit increase	NR [16516521] (imputed)	N
1182	chr16	78258809	78258810	rs2059238	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Cardiac structure and function	12,612 European ancestry individuals	4,094 European ancestry individuals	16q23.1	WWOX	rs2059238-A	0.22	3E-6	(LV wall thickness)	0.02	[0.01-0.03] cm decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1182	chr16	78263086	78263087	rs34592201	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.1	NR	rs34592201-?	NR	7E-8				Affymetrix [NR]	N
1182	chr16	78281159	78281160	rs8050111	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	16q23.1	WWOX	rs8050111-G	0.066	2E-8		2.12	[1.63-2.75 (HR)	Illumina [11220132] (imputed)	N
1182	chr16	78305292	78305293	rs78507369	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	16q23.1	WWOX, LSM3P5	rs78507369-?		2E-6	(Additive)	3.0	[1.90-1.70]	Illumina [5600610] (imputed)	N
1182	chr16	78318742	78318743	rs9927590	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.5088..L.glutamate.degradation.VIII..to.propanoate.)	7,738 European ancestry individuals	NA	16q23.1		rs9927590-C	0.9156116310160428	9E-9		0.3392649	[0.22-0.46] unit decrease	Illumina [5584686] (imputed)	N
1182	chr16	78321698	78321699	rs67003685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.1		rs67003685-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1182	chr16	78335043	78335044	rs78867184	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	16q23.1	WWOX	rs78867184-G	NR	9E-6		0.213	unit increase	Illumina [5767231] (imputed)	N
1182	chr16	78364991	78364992	rs56858262	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	16q23.1	WWOX	rs56858262-A	0.1363	7E-6		0.2992	[0.17-0.43] unit increase	NR [NR] (imputed)	N
1183	chr16	78385942	78385943	rs72794054	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	16q23.1	NR	rs72794054-A	0.0445	1E-7		0.3947	[0.25-0.54] unit decrease	Illumina [10677593] (imputed)	N
1183	chr16	78404114	78404115	rs9934682	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	16q23.1	NR	rs9934682-?	0.1674	7E-6		0.098512	[0.056-0.141] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1183	chr16	78426685	78426686	rs6564537	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	16q23.1	WWOX	rs6564537-T	0.085	1E-8	(hip shape mode 1)	0.12	[0.079-0.161] unit decrease	Illumina [7191926] (imputed)	N
1183	chr16	78466703	78466704	rs11150078	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	16q23.1	WWOX	rs11150078-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1183	chr16	78492859	78492860	rs10514437	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	16q23.1	WWOX	rs10514437-G	NR	2E-8		3.76	percent decrease	Affymetrix [8762422] (imputed)	N
1184	chr16	78515130	78515131	rs16947662	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	16q23.1	NR	rs16947662-G	0.01811	1E-6		0.5545	[0.33-0.78] unit decrease	Illumina [10677593] (imputed)	N
1184	chr16	78518910	78518911	rs2738696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.1		rs2738696-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1184	chr16	78520405	78520406	rs142789964	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	16q23.1	WWOX	rs142789964-T	0.014	2E-6		3.49	[2.25-5.42] (HR)	Illumina [11220132] (imputed)	N
1184	chr16	78556641	78556642	rs2941954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q23.1	WWOX	rs2941954-G	0.71782	6E-15		0.019643541	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr16	78556641	78556642	rs2941954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q23.1	WWOX	rs2941954-G	0.717798	2E-15		0.019990446	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr16	78558238	78558239	rs2738744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q23.1	WWOX	rs2738744-G	0.735572	3E-12		0.01759723	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1184	chr16	78558238	78558239	rs2738744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs2738744-G	0.717539	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
1184	chr16	78558238	78558239	rs2738744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q23.1	NR	rs2738744-G	0.734447	9E-13		0.015326	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1184	chr16	78558320	78558321	rs62033976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q23.1		rs62033976-G	NR	3E-11		0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1184	chr16	78569956	78569957	rs17706989	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	16q23.1	WWOX	rs17706989-?	0.03	1E-6	(olanzapine)			Affymetrix [492900]	N
1184	chr16	78570881	78570882	rs549245859	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q23.1	NR	rs549245859-?	NR	6E-7		0.0084364	[0.0051-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1184	chr16	78581137	78581138	rs2667648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs2667648-C	0.778371	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
1184	chr16	78581137	78581138	rs2667648	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q23.1	NR	rs2667648-C	0.76757	4E-16		0.017782	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1184	chr16	78605446	78605447	rs117481163	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	16q23.1	NR	rs117481163-?		2E-6		0.043	[0.025-0.061] unit increase	Illumina [7533529] (imputed)	N
1184	chr16	78626582	78626583	rs1912804	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.1	NR	rs1912804-?	NR	4E-6				Affymetrix [NR]	N
1184	chr16	78626582	78626583	rs1912804	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	16q23.1	WWOX	rs1912804-?		1E-6		1.586	[NR]	Affymetrix [492217] (imputed)	N
1184	chr16	78626582	78626583	rs1912804	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	16q23.1	WWOX	rs1912804-?		3E-7		1.693	[NR]	Affymetrix [492217] (imputed)	N
1184	chr16	78627090	78627091	rs2673774	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	16q23.1		rs2673774-A	NR	2E-6		1.9047	[1.15-2.66] unit increase	Illumina [NR] (imputed)	N
1184	chr16	78631793	78631794	rs2859631	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	16q23.1	WWOX	rs2859631-?	0.07	1E-6				Affymetrix, Illumina [1348798]	N
1184	chr16	78642805	78642806	rs2548879	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	16q23.1	WWOX	rs2548879-?	NR	4E-9		0.39	[0.25-0.53] unit decrease	Affymetrix [11100000] (imputed)	N
1185	chr16	78657883	78657884	rs12596233	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	16q23.1	WWOX	rs12596233-?	NR	7E-6	(Hispanic/Latino)			NR [at least 880000]	N
1185	chr16	78687218	78687219	rs7197349	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	16q23.1	NR	rs7197349-G		3E-6		0.0968	[0.056-0.137] SD units decrease	NR [10700000] (imputed)	N
1185	chr16	78731832	78731833	rs78637841	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	16q23.1	WWOX	rs78637841-G	0.0	4E-7	(African American)	2.06	[1.28-2.84] unit increase	Illumina [up to 13042663] (imputed)	N
1185	chr16	78740995	78740996	rs76823993	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	16q23.1	WWOX	rs76823993-A	NR	2E-10		0.382	[0.27-0.5] unit decrease	Affymetrix [9868623] (imputed)	N
1185	chr16	78764096	78764097	rs8047442	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	16q23.1	WWOX	rs8047442-C	0.368	8E-6		1.34	[1.17-1.54]	Affymetrix [up to 27494467] (imputed)	N
1186	chr16	78778658	78778659	rs56126557	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	16q23.1	WWOX	rs56126557-?		2E-6		0.6787	[NR] unit increase	Affymetrix [NR] (imputed)	N
1186	chr16	78790764	78790765	rs7199110	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	9,844 European ancestry cases, 20,403 European ancestry controls	NA	16q23.1	WWOX	rs7199110-A	NR	5E-6		4.553	NR z score decrease	Affymetrix [at least 557813] (imputed)	N
1186	chr16	78805199	78805200	rs2161719	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16q23.1	WWOX	rs2161719-G	0.18	3E-6	(AA)	5.76	[NR]	Illumina [905956]	N
1186	chr16	78807842	78807843	rs16944118	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16q23.1	NR	rs16944118-?	NR	7E-7	(AA)	6.49	[5.51-7.47]	Illumina [905956]	N
1186	chr16	78809071	78809072	rs12445943	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16q23.1	NR	rs12445943-?	NR	8E-7	(AA)	6.26	[5.36-7.16]	Illumina [905956]	N
1186	chr16	78857424	78857425	rs56209917	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	16q23.1		rs56209917-?	NR	8E-6		0.298	[0.17-0.43] unit increase	Illumina [5082878] (imputed)	N
1187	chr16	78913386	78913387	rs2656620	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	16q23.1	NR	rs2656620-A	NR	2E-6		0.23	[0.13-0.33] unit increase	NR [5896100] (imputed)	N
1187	chr16	78921062	78921063	rs4887991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.1		rs4887991-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1187	chr16	78927242	78927243	rs8050494	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.1	MAF	rs8050494-?	NR	7E-6	(LPC 22:6)	0.4893942	[0.28-0.7] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1187	chr16	78929312	78929313	rs1124356	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	16q23.1	Intergenic	rs1124356-?	NR	4E-6		1.354	[NR]	Affymetrix [492217] (imputed)	N
1187	chr16	78930736	78930737	rs58423913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs58423913-C	0.957	4E-6	(AA)	0.038	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78932377	78932378	rs7192392	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	16q23.1	WWOX	rs7192392-?		2E-7				Affymetrix [905761]	N
1187	chr16	78935907	78935908	rs2047925	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs2047925-C	0.958	1E-6	(AA)	0.042	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78937137	78937138	rs4888873	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs4888873-C	0.957	3E-6	(AA)	0.04	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78937751	78937752	rs62038064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs62038064-G	0.956	1E-6	(AA)	0.042	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78938588	78938589	rs59626546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs59626546-G	0.954	3E-6	(AA)	0.04	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78938642	78938643	rs55760002	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.1	WWOX	rs55760002-G	0.955	3E-6	(AA)	0.04	unit increase	Illumina [NR] (imputed)	N
1187	chr16	78950000	78950001	rs12923991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q23.1		rs12923991-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1187	chr16	78952438	78952439	rs9923451	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	16q23.1	WWOX	rs9923451-?	NR	8E-7	(HIP)			Illumina [~ 550000]	N
1187	chr16	78967193	78967194	rs7198756	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q23.1	NR	rs7198756-?	NR	4E-6		2.615	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1187	chr16	78982439	78982440	rs7184656	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	16q23.1	WWOX	rs7184656-A	0.37	8E-6		0.0723	[0.041-0.104] unit decrease	Illumina [544877]	N
1187	chr16	79003253	79003254	rs2062902	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enteroscipio abundance in stool	5,959 Finnish ancestry individuals	NA	16q23.1		rs2062902-T	0.396791	4E-8		0.0596987	[0.038-0.081] unit increase	Illumina [7980478] (imputed)	N
1187	chr16	79011071	79011072	rs1875939	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	16q23.1	WWOX	rs1875939-G	0.1572	8E-7		1.647	[1.351-2.009]	Affymetrix, Illumina [14074516] (imputed)	N
1187	chr16	79027128	79027129	rs4888910	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	16q23.1		rs4888910-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1188	chr16	79040103	79040104	rs113496184	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q23.1	NR	rs113496184-?	NR	2E-7	(AA)	1.256	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1188	chr16	79040869	79040870	rs34982954	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	16q23.1	NR	rs34982954-C	NR	9E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1188	chr16	79058256	79058257	rs11642282	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	16q23.1	WWOX	rs11642282-?	NR	7E-6	(AUC)			NR [2092490]	N
1188	chr16	79073420	79073421	rs17713676	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	16q23.1	WWOX	rs17713676-?	NR	8E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1188	chr16	79110595	79110596	rs12149527	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16q23.1	WWOX	rs12149527-A	0.47	3E-11		1.08		Illumina [161311]	N
1188	chr16	79111296	79111297	rs12925972	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q23.1	WWOX	rs12925972-C	NR	1E-19		1.107	NR	Affymetrix, Illumina [8278136] (imputed)	N
1188	chr16	79132012	79132013	rs78625108	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1206 sp000433115 abundance in stool	5,959 Finnish ancestry individuals	NA	16q23.1		rs78625108-C	0.0523206	3E-8		0.18289	[0.12-0.25] unit increase	Illumina [7980478] (imputed)	N
1188	chr16	79155916	79155917	rs9940536	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	16q23.1	intergenic	rs9940536-T	0.321	3E-6		0.022	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1188	chr16	79167308	79167309	rs12716869	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q23.1		rs12716869-G	0.27	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
1189	chr16	79177292	79177293	rs12449066	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q23.1		rs12449066-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1189	chr16	79186885	79186886	rs8050187	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	16q23.1	NR	rs8050187-?	NR	9E-8				Illumina [at least 7383741] (imputed)	N
1189	chr16	79186885	79186886	rs8050187	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	16q23.1	WWOX	rs8050187-T	0.736	7E-6		0.044	[0.024-0.064] unit decrease	Illumina [6150213] (imputed)	N
1189	chr16	79189809	79189810	rs193031333	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	16q23.1	WWOX, RNA5SP431	rs193031333-A	NR	5E-7	(daytime resting)	2.502	[1.52-3.48] unit decrease	Affymetrix [7141204] (imputed)	N
1189	chr16	79199109	79199110	rs1110544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q23.1	WWOX	rs1110544-C	0.431384	2E-12		0.015717896	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1189	chr16	79199109	79199110	rs1110544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q23.1		rs1110544-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1189	chr16	79199413	79199414	rs1110542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q23.1	WWOX	rs1110542-T	0.417422	2E-12		0.01574038	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1189	chr16	79199413	79199414	rs1110542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q23.1	NR	rs1110542-T	0.419122	2E-12		0.013131	[0.0095-0.0168] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1189	chr16	79199413	79199414	rs1110542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q23.1	NR	rs1110542-T	0.419317	3E-15		0.014747	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1189	chr16	79199589	79199590	rs9972791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs9972791-C	0.539113	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
1189	chr16	79200477	79200478	rs11150141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q23.1		rs11150141-G	NR	5E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1189	chr16	79200477	79200478	rs11150141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q23.1		rs11150141-G	NR	2E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1189	chr16	79200477	79200478	rs11150141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q23.1		rs11150141-G	NR	2E-10		0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1189	chr16	79200477	79200478	rs11150141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q23.1	WWOX	rs11150141-G	0.445888	2E-10		0.014172596	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1189	chr16	79200477	79200478	rs11150141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.1	NR	rs11150141-G	0.547741	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
1189	chr16	79213238	79213239	rs12716871	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q23.1	NR	rs12716871-C	0.555969	4E-9		0.0128092	[0.0085-0.0171] unit decrease	NR [NR]	N
1189	chr16	79218584	79218585	rs78435901	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		WWOX	rs78435901-?	NR	2E-8	(female)	1.30966	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1189	chr16	79221467	79221468	rs112697296	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	16q23.1	WWOX	rs112697296-T	0.02	2E-6		3.15	[1.97-5.03]	Illumina [7959153] (imputed)	N
1189	chr16	79223967	79223968	rs55986698	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q23.1	NR	rs55986698-A	0.183	4E-6	(EA)	0.0421	[0.024-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
1189	chr16	79237938	79237939	rs74465625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q23.2		rs74465625-C	NR	8E-12		0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1189	chr16	79238562	79238563	rs71398138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.2		rs71398138-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1189	chr16	79243027	79243028	rs79495055	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q23.2	NR	rs79495055-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1189	chr16	79252323	79252324	rs270421	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	16q23.2	WWOX	rs270421-C	0.28	8E-6	(AA)	0.19	[0.11-0.27] unit increase	Illumina [up to 905285]	N
1189	chr16	79261959	79261960	rs270418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.2	RP11-679B19.2	rs270418-T	0.834524	5E-9		0.017392164	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1189	chr16	79267428	79267429	rs693764	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	16q23.2	NR	rs693764-?	NR	5E-6		0.1312	[0.074-0.188] unit decrease	Illumina [at least 560000] (imputed)	N
1189	chr16	79286502	79286503	rs11859008	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q23.2	WWOX	rs11859008-C	NR	2E-7		1.0863	NR	Affymetrix, Illumina [8278136] (imputed)	N
1190	chr16	79316532	79316533	rs4888945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	16q23.2		rs4888945-G	NR	6E-11		0.0665	[0.047-0.086] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1190	chr16	79316814	79316815	rs8054578	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	16q23.2	RN5S431	rs8054578-A	0.223812	2E-10		0.069831446	[0.048-0.091] unit increase	Affymetrix [7288503] (imputed)	N
1190	chr16	79316814	79316815	rs8054578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	16q23.2		rs8054578-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1190	chr16	79345691	79345692	rs9934640	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	16q23.2	WWOX, MAF	rs9934640-?	NR	5E-6	(adjusted for dose, GFR & AST)	8.074	unit increase (EA, Australian cohort)	Illumina [610255]	N
1190	chr16	79349482	79349483	rs11150152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.2		rs11150152-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1190	chr16	79350203	79350204	rs17724508	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q23.2	WWOX	rs17724508-T	NR	6E-14		1.1431	NR	Affymetrix, Illumina [8278136] (imputed)	N
1190	chr16	79355856	79355857	rs62039712	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	16q23.2	WWOX, MAF	rs62039712-A	0.116	4E-8		1.16	[1.10-1.23]	Affymetrix, Illumina [11480632] (imputed)	N
1190	chr16	79363078	79363079	rs1121985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q23.2		rs1121985-C	0.624324	1E-19		0.021233521	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr16	79363813	79363814	rs7191820	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.2	intergenic	rs7191820-A	0.486	6E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1190	chr16	79377143	79377144	rs67671377	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	16q23.2	WWOX	rs67671377-A	0.12	5E-6	(African American)	0.27	0.15-0.38 unit increase	Illumina [NR] (imputed)	N
1190	chr16	79388208	79388209	rs8045027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q23.2		rs8045027-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1190	chr16	79405193	79405194	rs117952535	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	16q23.2	NR	rs117952535-?	NR	9E-6		2.2299	[1.4-3.06] unit decrease	Illumina [at least 560000] (imputed)	N
1190	chr16	79406917	79406918	rs17797882	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	16q23.2	WWOX	rs17797882-T	0.32	9E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [2626356] (imputed)	N
1191	chr16	79431852	79431853	rs4888966	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	16q23.2	LOC729251	rs4888966-?	NR	5E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1191	chr16	79449526	79449527	rs4547347	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	16q23.2	NR	rs4547347-?	NR	5E-7	(AA)	126.36	[122.05-130.67]	Illumina [905956]	N
1191	chr16	79458021	79458022	rs9319540	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	16q23.2		rs9319540-?	NR	4E-8		0.013	NR unit increase	NR [4548414] (imputed)	N
1191	chr16	79466555	79466556	rs12444044	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	WWOX	rs12444044-?	NR	6E-6	(choline)	0.36410996	[0.21-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1191	chr16	79481886	79481887	rs59395068	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	16q23.2	NR	rs59395068-T	NR	4E-6	(GEE model)	1.1214	[0.64-1.6] unit increase	NR [NR] (imputed)	N
1191	chr16	79504056	79504057	rs1862719	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16q23.2	NR	rs1862719-A	0.246309	8E-11		0.0147549	[0.01-0.019] unit increase	Affymetrix [15000001]	N
1191	chr16	79504056	79504057	rs1862719	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q23.2	MAF	rs1862719-A	0.246645	2E-8		0.0137734	[0.0089-0.0186] unit increase	Affymetrix [NR] (imputed)	N
1191	chr16	79517828	79517829	rs149647557	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	16q23.2	RP11-467I17.1	rs149647557-T	0.996	5E-6		0.4187	[0.24-0.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1191	chr16	79518133	79518134	rs2549499	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	16q23.2	NR	rs2549499-C	0.1152	2E-7		0.11	[0.069-0.151] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1191	chr16	79545000	79545001	rs398030003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16q23.2		rs398030003-T	NR	3E-11		0.0248	[0.018-0.032] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1191	chr16	79548295	79548296	rs7204211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q23.2	NR	rs7204211-G	NR	8E-10		0.0227	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1191	chr16	79551226	79551227	rs62041965	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (HDL cholesterol levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	16q23.2	WWOX, MAF	rs62041965-G	0.95	3E-7	(European)	0.064	[0.044-0.084] unit increase	Affymetrix [6982258] (imputed)	N
1192	chr16	79563575	79563576	rs35221977	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	16q23.2	MAF	rs35221977-C	NR	3E-8	(LPC(18:0;0))	0.4228	[0.27-0.57] unit decrease	Illumina [~ 9300000] (imputed)	N
1192	chr16	79563575	79563576	rs35221977	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	16q23.2	MAF	rs35221977-C	NR	2E-8	(Total_LPC)	0.4222	[0.27-0.57] unit decrease	Illumina [~ 9300000] (imputed)	N
1192	chr16	79563575	79563576	rs35221977	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	16q23.2	MAF	rs35221977-C	NR	1E-9	(LPC(16:0;0))	0.4583	[0.31-0.61] unit decrease	Illumina [~ 9300000] (imputed)	N
1192	chr16	79566149	79566150	rs1364095	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	WWOX	rs1364095-?	NR	1E-7	(asparagine)	0.18250181	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr16	79572158	79572159	rs16950558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q23.2	NR	rs16950558-C	NR	1E-14		0.0324	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1192	chr16	79573750	79573751	rs190369	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Lifetime average cigarettes per day in chronic obstructive pulmonary disease	3,440 European ancestry cases	NA	16q23.2	intergenic	rs190369-C	0.05	9E-6		0.161	unit increase	Illumina [~ 6300000] (imputed)	N
1192	chr16	79576620	79576621	rs78755089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q23.2		rs78755089-T	NR	5E-15		0.0351	[0.026-0.044] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1192	chr16	79584382	79584383	rs376068	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	WWOX	rs376068-?	NR	3E-6	(LPC 20:3)	0.21800843	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr16	79585020	79585021	rs7498403	20668459	Kim HN	2010-07-29	J Hum Genet	Genetic variants that affect length/height in infancy/early childhood in Vietnamese-Korean families.	Height	518 Vietnamese-Korean ancestry individuals from 165 families	NA	16q23.2	MAF	rs7498403-C	0.11	5E-6				Illumina [269888]	N
1192	chr16	79608691	79608692	rs1541692	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.2	Intergenic	rs1541692-C	0.327	3E-6	(AA)	0.016	unit decrease	Illumina [NR] (imputed)	N
1192	chr16	79610447	79610447	rs542982358	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	16q23.2	WWOX, MAF	rs542982358-?	NR	2E-9		0.7239	[0.48-0.96] unit increase	Affymetrix [11100000] (imputed)	N
1192	chr16	79612120	79612121	rs30387	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	WWOX	rs30387-?	NR	2E-6	(deoxycholate)	0.23022173	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1192	chr16	79614115	79614116	rs30388	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	16q23.2	NR	rs30388-T	NR	1E-6	(phenotype 1)	2.88	[NR]	Illumina [> 8000000] (imputed)	N
1192	chr16	79626235	79626236	rs113194286	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs113194286-G	0.0773324	5E-11		0.0384807	[0.027-0.05] unit decrease	NR [19129689] (imputed)	N
1192	chr16	79645061	79645062	rs7500349	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	16q23.2	NR	rs7500349-?	NR	1E-11		0.03198	[0.023-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1192	chr16	79645988	79645989	rs889472	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	16q23.2	MAF	rs889472-C	0.57	1E-9		0.0711	[0.048-0.094] mg/dl increase	Affymetrix, Illumina [2278301] (imputed)	N
1192	chr16	79647523	79647524	rs436536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q23.2		rs436536-T	NR	7E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1192	chr16	79649393	79649394	rs7196953	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16q23.2	MAF	rs7196953-A	0.3	1E-10		1.09		Illumina [161311]	N
1192	chr16	79650055	79650056	rs2348180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.2		rs2348180-A	0.706518	3E-13		0.017762454	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1192	chr16	79650055	79650056	rs2348180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q23.2		rs2348180-A	0.706493	2E-13		0.017978698	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1192	chr16	79651978	79651979	rs7188272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs7188272-G	0.656647	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
1192	chr16	79651978	79651979	rs7188272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q23.2	NR	rs7188272-G	0.705086	3E-15		0.017223	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1192	chr16	79652540	79652541	rs386965	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16q23.2	MAF	rs386965-G	NR	4E-6		1.09	[1.07-1.11]	Illumina [465434]	N
1192	chr16	79652719	79652720	rs6564681	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q23.2	MAF	rs6564681-C	NR	4E-14		1.0808474	NR	Affymetrix, Illumina [8278136] (imputed)	N
1192	chr16	79673812	79673813	rs76075303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	16q23.2	NR	rs76075303-C	NR	3E-9		0.0341	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1192	chr16	79682750	79682751	rs1424233	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q23.2	MAF	rs1424233-A	0.48	2E-8	(adults)	1.39	[1.23-1.40]	Illumina [308846]	N
1192	chr16	79682750	79682751	rs1424233	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q23.2	MAF	rs1424233-A	0.43	4E-13				Illumina [308846]	N
1192	chr16	79682750	79682751	rs1424233	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	16q23.2	MAF	rs1424233-A	0.43	2E-6	(children)	1.12	[1.00-1.24]	Illumina [308846]	N
1192	chr16	79683029	79683030	rs17687445	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q23.2	MAF	rs17687445-T	0.879164	8E-24		0.00357093	[0.0029-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
1193	chr16	79700446	79700447	rs4889009	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	16q23.2	NR	rs4889009-G		3E-7		1.14	[1.08-1.21]	Affymetrix, Illumina [up to 3437411] (imputed)	N
1193	chr16	79702370	79702371	rs16950982	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	16q23.2	NR	rs16950982-G	0.37	4E-6				Illumina [6479975] (imputed)	N
1193	chr16	79708990	79708991	rs11644758	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	16q23.2	NR	rs11644758-A	0.66	2E-9		0.322	[0.22-0.43] unit increase	Affymetrix [NR] (imputed)	N
1193	chr16	79709572	79709572	rs57349855	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q23.2	NR	rs57349855-C	0.369141	5E-12		0.0216951	[0.016-0.028] unit increase	Affymetrix [16577313] (imputed)	N
1193	chr16	79709949	79709950	rs12444166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16q23.2		rs12444166-A	NR	8E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1193	chr16	79716042	79716043	rs12449109	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q23.2		rs12449109-G	0.667093	2E-8		0.0241326	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1193	chr16	79716305	79716306	rs12449161	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q23.2		rs12449161-G	0.667151	2E-8		0.0240202	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1193	chr16	79716624	79716625	rs56892402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q23.2		rs56892402-T	0.665759	6E-9		0.0253525	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1193	chr16	79718916	79718917	rs76819459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q23.2	RP11-345M22.1	rs76819459-G	0.325946	1E-29		0.027215697	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr16	79718916	79718917	rs76819459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q23.2	NR	rs76819459-G	0.325348	3E-32		0.023113	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1193	chr16	79726205	79726206	rs4889016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q23.2	NR	rs4889016-C	0.433088	5E-13		0.00629572	[0.0046-0.008] unit increase	Affymetrix [16582909] (imputed)	N
1193	chr16	79726205	79726206	rs4889016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q23.2	NR	rs4889016-C	0.433088	7E-10		0.00603747	[0.0042-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
1193	chr16	79734226	79734227	rs11150189	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	16q23.2	MAF	rs11150189-A		4E-11		0.035	[0.025-0.045] mg/dl increase	NR [NR] (imputed)	N
1193	chr16	79734226	79734227	rs11150189	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	16q23.2	intergenic	rs11150189-A	0.69	4E-16		0.2	unit increase	Illumina [5270624] (imputed)	N
1193	chr16	79734842	79734843	rs9937298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q23.2	NR	rs9937298-C	NR	9E-10		0.0169	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1193	chr16	79734986	79734987	rs7188445	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	16q23.2	MAF	rs7188445-A	0.33	2E-9		0.032	[0.022-0.042] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1193	chr16	79735046	79735047	rs7189954	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q23.2	NR	rs7189954-C	0.638888	4E-15		0.0171602	[0.013-0.021] unit decrease	NR [NR]	N
1193	chr16	79740540	79740541	rs56738967	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q23.2	MAF, MAFTRR	rs56738967-?		2E-15		0.0349	[0.026-0.044] unit decrease	Illumina [31500000] (imputed)	N
1193	chr16	79740540	79740541	rs56738967	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	16q23.2	MAF	rs56738967-C	0.321	8E-10		0.041	[0.027-0.055] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1193	chr16	79742192	79742193	rs7199794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.2		rs7199794-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1193	chr16	79742389	79742390	rs17689159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16q23.2		rs17689159-C	NR	2E-11		0.1621	[0.12-0.21] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
1193	chr16	79742389	79742390	rs17689159	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	16q23.2	MAF, MAFTRR	rs17689159-?	NR	2E-11		0.0326	[0.023-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1193	chr16	79744133	79744134	rs62043313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.2	RP11-345M22.1	rs62043313-G	0.377282	1E-10		0.014635857	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr16	79744133	79744134	rs62043313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q23.2	RP11-345M22.1	rs62043313-G	0.377289	4E-10		0.014287353	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr16	79744400	79744401	rs17767383	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	16q23.2	NR	rs17767383-A	0.32	2E-9		1.23	[1.15-1.33]	Illumina [9673063] (imputed)	N
1193	chr16	79744547	79744548	rs17767419	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	16q23.2	MAF, MAFTRR	rs17767419-T	0.433	3E-8	(EA)	0.022857143	[0.015-0.031] unit decrease	Illumina [1986983] (imputed)	N
1193	chr16	79744547	79744548	rs17767419	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	16q23.2	MAF, MAFTRR	rs17767419-T	0.2775	9E-15	(Japanese)	0.0344	[0.026-0.043] unit decrease	Illumina [1986983] (imputed)	N
1193	chr16	79744547	79744548	rs17767419	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	16q23.2	MAF	rs17767419-T	0.321	9E-15	(thyroid volume)	0.068	[0.05-0.09] unit increase	Affymetrix [2748910] (imputed)	N
1193	chr16	79745672	79745672	rs562609617	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q23.2	NR	rs562609617-GT	0.31432899999999997	5E-17		0.0106675	[0.0082-0.0131] unit increase	Affymetrix [16582621] (imputed)	N
1193	chr16	79745672	79745672	rs562609617	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q23.2	NR	rs562609617-GT	0.31432899999999997	3E-15		0.0106037	[0.008-0.0132] unit increase	Affymetrix [16582614] (imputed)	N
1193	chr16	79745673	79745673	rs11376510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q23.2		rs11376510-GT	NR	4E-11		0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1193	chr16	79745673	79745673	rs11376510	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q23.2	MAFTRR	rs11376510-G	0.737	2E-10		0.898	[0.86-0.93]	Illumina [11270530] (imputed)	N
1193	chr16	79745895	79745896	rs7202240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	16q23.2		rs7202240-A	0.276608	6E-11		0.0283249	[0.02-0.037] unit increase	Illumina [13474352] (imputed)	N
1193	chr16	79748075	79748076	rs73575085	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CGA;TSHB	5,362 Icelandic ancestry individuals	NA	16q23.2		rs73575085-C	0.2775	8E-15		0.164286	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
1193	chr16	79749004	79749005	rs17767742	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	16q23.2	MAF	rs17767742-G	0.354	6E-20		0.113	[0.089-0.137] unit decrease	Illumina [at least 9558836] (imputed)	N
1193	chr16	79749275	79749276	rs3813579	21565293	Teumer A	2011-05-13	Am J Hum Genet	Genome-wide association study identifies four genetic loci associated with thyroid volume and goiter risk.	Thyroid volume	3,620 European ancestry individuals	1,290 European ancestry individuals	16q23.2	MAF	rs3813579-A	0.518	4E-10	(goiter)	1.32	[1.21-1.44]	Affymetrix [2748910] (imputed)	N
1193	chr16	79749352	79749353	rs3813582	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	16q23.2	LOC440389, MAF	rs3813582-T	0.674	8E-18	(TSH)	0.082	[0.062-0.102] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1193	chr16	79749352	79749353	rs3813582	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	16q23.2	LOC440389, MAF	rs3813582-T	0.674	6E-17	(TSH - Males)	0.115	[0.088-0.142] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1193	chr16	79749352	79749353	rs3813582	22494929	Rawal R	2012-04-16	Hum Mol Genet	Meta-analysis of two genome-wide association studies identifies four genetic loci associated with thyroid function.	Thyroid function	3,736 European ancestry individuals	3,727 European ancestry individuals	16q23.2	LOC440389, MAF	rs3813582-T	0.681	6E-10		0.068	[0.046-0.090] unit increase	Affymetrix, Illumina [2524918] (imputed)	N
1193	chr16	79750331	79750332	rs73575095	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	16q23.2	MAF, MAFTRR	rs73575095-T	0.719	4E-15	(Japanese)	0.035	[0.025-0.045] unit increase	Illumina [5864938] (imputed)	N
1193	chr16	79751590	79751591	rs58722186	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	16q23.2	MAF, MAFTRR	rs58722186-T	0.329979932670204	4E-78		0.0907	[0.081-0.1] SD decrease	Illumina [22400000] (imputed)	N
1193	chr16	79753466	79753467	rs11642757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	16q23.2	NR	rs11642757-A	NR	4E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1193	chr16	79753570	79753571	rs144899207	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	16q23.2	NR	rs144899207-?	NR	2E-13		0.03784	[0.028-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16q23.2		rs57652769-T	NR	1E-13		0.1917	[0.14-0.24] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	16q23.2	MAF	rs57652769-?	NR	2E-9		0.0016	[0.001-0.0022] unit increase	Affymetrix [21347608] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	16q23.2	MAF	rs57652769-?	NR	6E-8		0.0024	[0.0014-0.0034] unit increase	Affymetrix [21347608] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q23.2	RP11-345M22.1, RP11-345M22.2	rs57652769-T	0.311614	7E-21		0.022834204	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q23.2	MAFTRR	rs57652769-T	0.2953	2E-27		0.0372	[0.031-0.044] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q23.2	MAFTRR	rs57652769-T	0.3094	9E-18		0.036197	[0.028-0.044] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q23.2	NR	rs57652769-T	0.2962	2E-17	(women)	0.0421	[0.032-0.052] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1193	chr16	79753975	79753976	rs57652769	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	16q23.2	NR	rs57652769-T	0.2902	3E-10	(men)	0.0349	[0.024-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1193	chr16	79754433	79754434	rs140851213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	16q23.2		rs140851213-T	NR	5E-9		0.1367	[0.091-0.183] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
1193	chr16	79754433	79754434	rs140851213	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	16q23.2		rs140851213-T	0.72	8E-6	(East Asian, joint analysis)	1.098901	[1.05-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1193	chr16	79754439	79754440	rs200293726	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q23.2	MAFTRR	rs200293726-A	0.693498	2E-11		0.00277359	[0.0019-0.0036] unit decrease	Affymetrix [13995440] (imputed)	N
1193	chr16	79754439	79754440	rs200293726	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q23.2	MAF	rs200293726-A	0.693925	3E-9		0.0128609	[0.0086-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	16q23.2		rs4575545-G	0.692101	4E-9		0.026158	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q23.2		rs4575545-A	NR	2E-43		0.0267	[0.023-0.03] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q23.2		rs4575545-A	NR	4E-89		0.0439	[0.04-0.048] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q23.2		rs4575545-A	NR	5E-21		0.0197	[0.016-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q23.2	MAFTRR	rs4575545-G	0.693762	6E-114		0.00570906	[0.0052-0.0062] unit decrease	Affymetrix [13995440] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q23.2	MAF, DYNLRB2	rs4575545-A	0.31	8E-80		18.9	z-score increase	Affymetrix [4311822] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q23.2	NR	rs4575545-A	0.31	9E-37		0.0252	[0.021-0.029] unit decrease	NR [NR]	N
1193	chr16	79755445	79755446	rs4575545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs4575545-A	0.295138	4E-32				Affymetrix, Illumina [24588908] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16q23.2		rs4575545-?	NR	7E-12		0.0151655	[0.011-0.02] unit decrease	NR [6912294] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16q23.2		rs4575545-G	0.695172	3E-13		0.016	[0.012-0.02] unit decrease	NR [7250403] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16q23.2		rs4575545-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1193	chr16	79755445	79755446	rs4575545	24852370	Zhan M	2014-05-22	Hum Mol Genet	Genome-wide association study identifies a novel susceptibility gene for serum TSH levels in Chinese populations.	Serum thyroid-stimulating hormone levels	1,346 Han Chinese ancestry individuals	3,235 She Chinese ancestry individuals	16q23.2	MAF	rs4575545-?		2E-6				Illumina [8503852] (imputed)	N
1193	chr16	79756196	79756197	rs4334315	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	16q23.2		rs4334315-T	0.28	6E-14				NR [7104359] (imputed)	N
1193	chr16	79802839	79802840	rs4284656	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	16q23.2	LINC01229	rs4284656-T	0.04403901382978104	2E-6		1.7409471		Illumina [7574753] (imputed)	N
1193	chr16	79806080	79806081	rs66616635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q23.2		rs66616635-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1194	chr16	79836243	79836244	rs11150205	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs11150205-T	NR	2E-8		1.0465		Affymetrix [9869154] (imputed)	N
1194	chr16	79843035	79843036	rs6564708	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q23.2	NR	rs6564708-T	0.12	4E-9		0.0163	[0.011-0.022] unit increase	NR [NR]	N
1194	chr16	79847631	79847632	rs28709974	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	16q23.2	NR	rs28709974-C	NR	5E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
1194	chr16	79855831	79855832	rs66624999	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	16q23.2	intergenic	rs66624999-?	0.864	2E-7	(conditional on Round 2 SNPs)	0.04	unit increase	Affymetrix [10109774] (imputed)	N
1194	chr16	79872458	79872459	rs9921272	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	16q23.2		rs9921272-G	0.088787	7E-7		1.1270145	NR	Affymetrix [7846216] (imputed)	N
1194	chr16	79879452	79879453	rs4307960	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	16q23.2		rs4307960-A	0.9	7E-6		0.15	[0.091-0.209] unit increase	Illumina [5305352] (imputed)	N
1194	chr16	79889958	79889959	rs11150225	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	16q23.2		rs11150225-?	NR	7E-6	(overall)	1.21		Illumina [11595112] (imputed)	N
1194	chr16	79926133	79926134	rs11645023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q23.2		rs11645023-A	NR	2E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1194	chr16	79927217	79927218	rs9935686	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	16q23.2	NR	rs9935686-A	0.15	2E-28		0.0282	[0.023-0.033] unit increase	NR [NR]	N
1194	chr16	79927302	79927303	rs9925837	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q23.2	LINC01229	rs9925837-A	0.8445	6E-15		0.041628	[0.031-0.052] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1194	chr16	79927302	79927303	rs9925837	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	16q23.2	RP11-345M22.3, RP11-148M9.1	rs9925837-A	0.8519	5E-9	(EA)	0.035	[0.023-0.047] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1194	chr16	79928195	79928196	rs79261454	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	16q23.2		rs79261454-C	0.911642	6E-9		0.0400904	[0.027-0.054] unit decrease	NR [11722792] (imputed)	N
1194	chr16	79930838	79930839	rs12102860	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs12102860-G	0.05222	1E-13		0.0516429	[0.038-0.065] unit decrease	NR [19129689] (imputed)	N
1194	chr16	79931594	79931595	rs4077450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	16q23.2		rs4077450-T	0.593988	2E-15		0.0294254	[0.022-0.037] unit decrease	Illumina [13475706] (imputed)	N
1194	chr16	79931594	79931595	rs4077450	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q23.2	LINC01229	rs4077450-T	0.5901	2E-12	(East Asian)	0.0458	[0.033-0.059] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1194	chr16	79931719	79931720	rs4077451	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	16q23.2	NR	rs4077451-?	NR	1E-8		0.02726	[0.018-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1194	chr16	79938995	79938996	rs35286975	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q23.2	MAF	rs35286975-G	0.7933	2E-10		6.366	NR z score decrease	Illumina [26237160] (imputed)	N
1194	chr16	79942678	79942679	rs28581385	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q23.2	LINC01229	rs28581385-A	0.8358	3E-12		0.0028	[0.002-0.0036] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1194	chr16	79942678	79942679	rs28581385	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q23.2	LINC01229	rs28581385-A	0.8488	1E-12		0.0033	[0.0023-0.0043] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1195	chr16	79960720	79960721	rs143486974	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	16q23.2	NR	rs143486974-G	0.983526	9E-7		0.36	[0.22-0.5] unit increase	NR [9260588] (imputed)	N
1195	chr16	79991691	79991692	rs10514475	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	16q23.2	MAF	rs10514475-A	0.06	2E-8		1.11	[0.87-1.35] unit increase	Illumina [NR] (imputed)	N
1195	chr16	80007265	80007266	rs61336918	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	16q23.2	NR	rs61336918-A	0.29	2E-12		1.09	[1.06-1.12]	Affymetrix, Illumina [> 10000000] (imputed)	N
1195	chr16	80018949	80018950	rs4889062	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	16q23.2	intergenic	rs4889062-?	NR	2E-7		1.32	NR unit increase	Illumina [> 13000000] (imputed)	N
1195	chr16	80039620	80039621	rs4341754	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	16q23.2		rs4341754-?	0.57	5E-12	(East Asian)	1.098901	[1.06-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1195	chr16	80039620	80039621	rs4341754	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	16q23.2	WWOX, MAF	rs4341754-G	0.57	2E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1195	chr16	80043257	80043258	rs9930005	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	16q23.2	MAF, DYNLRB2	rs9930005-C	NR	2E-10	(East Asian)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1195	chr16	80043257	80043258	rs9930005	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	16q23.2	NR	rs9930005-C	0.4381	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1195	chr16	80046768	80046769	rs4493049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.2		rs4493049-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1195	chr16	80056806	80056807	rs4407073	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	16q23.2	NR	rs4407073-T	NR	7E-8		1.0976949	[1.06-1.14]	Illumina [6774630] (imputed)	N
1195	chr16	80078659	80078660	rs16952191	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	16q23.2		rs16952191-?	NR	4E-6		0.3232828	[0.19-0.46] unit decrease	Illumina [9939936] (imputed)	N
1196	chr16	80102761	80102762	rs1842024	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs1842024-G	0.248601	5E-11		0.0237267	[0.017-0.031] unit decrease	NR [19129689] (imputed)	N
1196	chr16	80105865	80105866	rs12149074	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Eating disorder in bipolar disorder	184 European ancestry cases, 2,006 European ancestry controls	NA	16q23.2	NR	rs12149074-G	0.63	4E-7		1.8867927	[NR]	Affymetrix [703012]	N
1196	chr16	80105865	80105866	rs12149074	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	16q23.2	NR	rs12149074-G	0.63	4E-6		1.7857143	[NR]	Affymetrix [703012]	N
1196	chr16	80184312	80184313	rs12325508	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	16q23.2	LINC01229, LOC102724084	rs12325508-?	NR	2E-14		0.06773	[0.05-0.085] unit increase novel	Illumina [6108953] (imputed)	N
1196	chr16	80187373	80187374	rs10514487	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	16q23.2	LINC01229, LOC102724084	rs10514487-T	0.073	2E-6		1.309	NR	Illumina [at least 870261] (imputed)	N
1196	chr16	80192604	80192605	rs8060581	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	16q23.2	DYNLRB2	rs8060581-?	0.02466	1E-6	(ACL, LAC, or Anti-B2 GPI)	6.714	[NR]	Affymetrix [906600]	N
1196	chr16	80193069	80193070	rs75861150	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	16q23.2	LOC102724084	rs75861150-T	0.84	1E-8		7.142857	[3.57-14.29]	Affymetrix [508192]	N
1196	chr16	80215560	80215561	rs9935652	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q23.2	NR	rs9935652-?		4E-8				Illumina [4322238] (imputed)	N
1197	chr16	80242951	80242952	rs12149918	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	CDYL2	rs12149918-?	NR	1E-7	(ribose 5 P; ribulose 5 P)	0.8925732	[0.56-1.23] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1197	chr16	80256440	80256441	rs139343937	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	16q23.2	LOC102724084	rs139343937-A	NR	3E-6		0.247831	[0.14-0.35] unit decrease	Affymetrix, Illumina [at least 292549] (imputed)	N
1197	chr16	80280760	80280761	rs73577700	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	16q23.2	NR	rs73577700-T	0.15000000000000002	3E-6		1.1494253	[1.09-1.22]	NR [at least 8482392] (imputed)	N
1197	chr16	80280760	80280761	rs73577700	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	16q23.2	NR	rs73577700-T	0.15000000000000002	3E-6		1.1494253	[1.09-1.22]	NR [at least 8482392] (imputed)	N
1197	chr16	80284023	80284024	rs8046043	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	16q23.2	16q23	rs8046043-C	0.391629	2E-8		0.08458667	[0.055-0.114] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1197	chr16	80288962	80288963	rs11861761	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	16q23.2	NR	rs11861761-A	NR	6E-8				Affymetrix [at least 811691] (imputed)	N
1197	chr16	80298549	80298550	rs79358781	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q23.2	Intergenic	rs79358781-A	NR	1E-7	(between families)	5.268	unit increase	Affymetrix [up to 15107142] (imputed)	N
1197	chr16	80305550	80305551	rs11859036	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		16q23.2	NR	rs11859036-A	NR	7E-6		0.128	[0.071-0.185] unit increase	Illumina [~ 2500000] (imputed)	N
1198	chr16	80423906	80423907	rs12919036	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	16q23.2	NR	rs12919036-A		1E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
1198	chr16	80451141	80451142	rs12447016	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	16q23.2	NR	rs12447016-?	NR	4E-8		0.112185	[0.072-0.152] unit decrease	NR [13958389] (imputed)	N
1198	chr16	80467192	80467193	rs137967137	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q23.2	Intergenic	rs137967137-A	NR	1E-7	(between families)	5.331	unit increase	Affymetrix [up to 15107142] (imputed)	N
1198	chr16	80468047	80468048	rs12927049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q23.2	NR	rs12927049-T	NR	3E-12		0.0484	[0.035-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1199	chr16	80493704	80493705	rs11150282	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (unknown genus id.1000001215)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.2		rs11150282-T	NR	7E-7		4.9516015	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1199	chr16	80493704	80493705	rs11150282	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (unknown family id.1000001214)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.2		rs11150282-T	NR	7E-7		4.9516015	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1199	chr16	80493704	80493705	rs11150282	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Gastranaerophilales id.1591)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.2		rs11150282-T	NR	7E-7		4.9516015	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q23.2		rs28650012-C	NR	2E-87		0.0405	[0.037-0.044] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16q23.2		rs28650012-C	NR	3E-25		0.0212	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	16q23.2	DYNLRB2	rs28650012-?	NR	9E-15		0.0023	[0.0017-0.0029] unit increase	Affymetrix [21347608] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	16q23.2	DYNLRB2	rs28650012-?	NR	4E-26		0.0047	[0.0037-0.0057] unit increase	Affymetrix [21347608] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	16q23.2	MAF, DYNLRB2	rs28650012-G	0.27	7E-22		9.62	z-score increase	Affymetrix [4312306] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q23.2	LOC102724084	rs28650012-?		3E-10		0.0263	[0.018-0.034] unit increase	Illumina [31500000] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q23.2	NR	rs28650012-G	0.271211	1E-9		0.00545726	[0.0036-0.0073] unit increase	Affymetrix [16582909] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q23.2	NR	rs28650012-G	0.271053	5E-11		0.00798609	[0.0054-0.0105] unit increase	Affymetrix [16582621] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q23.2	NR	rs28650012-G	0.271211	4E-7		0.0048732	[0.0028-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1199	chr16	80497340	80497341	rs28650012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q23.2	NR	rs28650012-G	0.271053	3E-9		0.0071244	[0.0044-0.0098] unit increase	Affymetrix [16582614] (imputed)	N
1199	chr16	80497600	80497601	rs4581712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	16q23.2		rs4581712-A	0.374909	1E-8		0.0205104	[0.013-0.028] unit increase	Illumina [13476165] (imputed)	N
1199	chr16	80497600	80497601	rs4581712	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	16q23.2	LOC102724084	rs4581712-?	NR	3E-9		0.02512	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1199	chr16	80497600	80497601	rs4581712	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	16q23.2	DYNLRB2	rs4581712-A	0.27	3E-9		3.2	[2.50-3.90] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1199	chr16	80498093	80498094	rs7189522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q23.2		rs7189522-C	NR	2E-19		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1199	chr16	80498093	80498094	rs7189522	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16q23.2	DYNLRB2	rs7189522-T	0.270622	5E-126		0.0134189	[0.012-0.015] unit increase	Affymetrix [13995440] (imputed)	N
1199	chr16	80498093	80498094	rs7189522	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q23.2	MAF, DYNLRB2	rs7189522-T	0.27	2E-15		7.93	z-score increase	Affymetrix [4314223] (imputed)	N
1199	chr16	80499046	80499047	rs78438875	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q23.2	NR	rs78438875-A	NR	1E-12		0.0469	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1199	chr16	80531514	80531515	rs4468638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q23.2	NR	rs4468638-A	NR	3E-13		0.02	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1199	chr16	80532693	80532694	rs56055503	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	16q23.2	MAF, DYNLRB2	rs56055503-A	0.7513	2E-11		6.719	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1199	chr16	80537759	80537760	rs4635359	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q23.2	MAF, DYNLRB2	rs4635359-?		2E-28				Affymetrix, Illumina [NR] (imputed)	N
1199	chr16	80537759	80537760	rs4635359	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	16q23.2	LOC102724084	rs4635359-?	NR	2E-22		0.699	[0.55-0.85] unit decrease	Affymetrix [11100000] (imputed)	N
1199	chr16	80558274	80558275	rs12102863	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q23.2	NR	rs12102863-C	0.01045	2E-8	(GOT2)	2.63	NR unit increase	Illumina [1671387] (imputed)	N
1200	chr16	80617580	80617581	rs1466181	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs1466181-C	0.475455	3E-18		0.0278182	[0.022-0.034] unit increase	NR [19129689] (imputed)	N
1200	chr16	80637014	80637015	rs8063688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.2		rs8063688-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1200	chr16	80643956	80643957	rs4613079	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	16q23.2	CDYL2	rs4613079-T	0.2	5E-10	(AA)	0.06	unit decrease	Affymetrix [5396780] (imputed)	N
1200	chr16	80644662	80644663	rs11150296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q23.2		rs11150296-C	NR	2E-8		1.0952903	[1.06-1.13]	Affymetrix [7846216] (imputed)	N
1200	chr16	80644662	80644663	rs11150296	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	16q23.2		rs11150296-C	NR	8E-12		1.0952903	NR	Affymetrix [7846216] (imputed)	N
1200	chr16	80648295	80648296	rs7500067	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q23.2	NR	rs7500067-G	0.2293	4E-27	(EA)	0.0785	[0.064-0.093] unit increase	Illumina [~ 11800000] (imputed)	N
1200	chr16	80650804	80650805	rs13329835	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q23.2		rs13329835-A	NR	3E-28		0.92	[0.91-0.94]	Affymetrix, Illumina [NR] (imputed)	N
1200	chr16	80650804	80650805	rs13329835	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q23.2	CDYL2	rs13329835-G	0.23	9E-27	(EA)	1.07	[1.05-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1200	chr16	80650804	80650805	rs13329835	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	16q23.2	NR	rs13329835-G	0.22	6E-12		1.08	[1.06-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1200	chr16	80650804	80650805	rs13329835	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	16q23.2	NR	rs13329835-G	0.22	2E-17		1.08	[1.06-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1200	chr16	80650804	80650805	rs13329835	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	16q23.2	CDYL2	rs13329835-G	0.22	2E-16		1.08	[1.05-1.10]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1200	chr16	80651659	80651660	rs873994	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	16q23.2		rs873994-?	NR	4E-7		1.08962	[1.06-1.12]	NR [682398]	N
1200	chr16	80667058	80667059	rs148821008	31748686	Oh JJ	2019-11-20	Sci Rep	An exome-wide rare variant analysis of Korean men identifies three novel genes predisposing to prostate cancer.	Prostate cancer	985 Korean ancestry cases and 6,273 Korean ancestry controls	NA	16q23.2	CDYL2	rs148821008-T	5.59E-4	5E-7				Illumina [71270]	N
1200	chr16	80673306	80673307	rs141379129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q23.2		rs141379129-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1200	chr16	80675039	80675040	rs74794145	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs74794145-C	0.0351953	4E-15		0.0670715	[0.05-0.084] unit decrease	NR [19129689] (imputed)	N
1200	chr16	80709342	80709343	rs16953809	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	16q23.2	NR	rs16953809-?		1E-7		0.5	[0.39-0.65]	Illumina [539473] (imputed)	N
1200	chr16	80729042	80729043	rs76856708	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	16q23.2	NR	rs76856708-C	NR	3E-6		0.3289	[0.19-0.47] SD units decrease	NR [10700000] (imputed)	N
1201	chr16	80745774	80745775	rs41472047	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	16q23.2	NR	rs41472047-?	NR	8E-6	(females)			Illumina [1211988] (imputed)	N
1201	chr16	80752292	80752293	rs8046061	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q23.2	CDYL2	rs8046061-C	0.452593	9E-21		0.00213334	[0.0017-0.0026] unit increase	Affymetrix [13995440] (imputed)	N
1201	chr16	80779330	80779331	rs11647695	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q23.2	CDYL2	rs11647695-A	0.45	8E-12		6.84	z-score increase	Affymetrix [4311822] (imputed)	N
1201	chr16	80784796	80784797	rs13329850	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	50,331 European ancestry women	NA	16q23.2		rs13329850-C	0.74	3E-8		0.308	[0.2-0.42] unit decrease	Affymetrix [8918919] (imputed)	N
1201	chr16	80785447	80785448	rs16953946	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	16q23.2	CDYL2	rs16953946-C	0.17	2E-8		1.23	[1.14-1.32]	Illumina [522285]	N
1201	chr16	80830812	80830813	rs2580315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q23.2		rs2580315-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1201	chr16	80838977	80838978	rs72820985	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q23.2	NR	rs72820985-G	0.1609	1E-6	(EA)	0.0423	[0.025-0.059] unit decrease	Illumina [~ 11800000] (imputed)	N
1201	chr16	80839588	80839590	rs147628895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q23.2		rs147628895-A	NR	7E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1201	chr16	80839588	80839590	rs147628895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q23.2		rs147628895-A	NR	1E-9		0.0214	[0.015-0.028] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1201	chr16	80839588	80839588	rs776777733	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs776777733-?	NR	1E-16		0.0339955	[0.026-0.042] unit increase	Affymetrix [20259828] (imputed)	N
1201	chr16	80843234	80843234	rs34018670	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q23.2	intergenic	rs34018670-CAG	0.1224	5E-9		0.03285713	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1201	chr16	80851977	80851978	rs117538856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q23.2		rs117538856-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1201	chr16	80851977	80851978	rs117538856	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs117538856-A	0.0507191	1E-17		0.0603204	[0.046-0.074] unit increase	NR [19129689] (imputed)	N
1201	chr16	80857228	80857229	rs368978648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	16q23.2	PRCAT47	rs368978648-T	0.9941	2E-6		1.8397	[1.08-2.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1201	chr16	80857228	80857229	rs368978648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	16q23.2	PRCAT47	rs368978648-T	0.9949	4E-6		1.797	[1.03-2.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1201	chr16	80861675	80861676	rs2549732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q23.2		rs2549732-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1201	chr16	80864775	80864776	rs56844452	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	16q23.2	CDYL2	rs56844452-C	0.9292	5E-16		0.3289	[0.25-0.41] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1201	chr16	80865236	80865237	rs2549722	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q23.2	PRCAT47	rs2549722-T	0.931079	3E-16		0.0297602	[0.023-0.037] unit increase	NR [13737936] (imputed)	N
1201	chr16	80867903	80867904	rs16954120	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q23.2	AK093002	rs16954120-A	0.887	2E-10		0.2116	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1202	chr16	80934494	80934495	rs7186061	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q23.2	PRCAT47	rs7186061-A	0.15034	2E-12		0.0181891	[0.013-0.023] unit decrease	NR [13737936] (imputed)	N
1202	chr16	80934494	80934495	rs7186061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q23.2		rs7186061-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1202	chr16	80934494	80934495	rs7186061	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs7186061-?	NR	5E-10		0.0172731	[0.012-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1202	chr16	80964599	80964600	rs139157021	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q23.2	NR	rs139157021-C	0.0880674	1E-12		0.0390595	[0.028-0.05] unit increase	NR [19129689] (imputed)	N
1202	chr16	80968522	80968523	rs147775077	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enorma massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	16q23.2		rs147775077-T	0.0317621	2E-8		0.133296	[0.087-0.18] unit increase	Illumina [7980478] (imputed)	N
1202	chr16	80976885	80976886	rs77336552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q23.2		rs77336552-C	0.131851	2E-15		0.026662264	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1202	chr16	80976885	80976886	rs77336552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q23.2		rs77336552-C	0.131788	1E-15		0.027035106	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1203	chr16	81040554	81040555	rs2287991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q23.2		rs2287991-T	NR	1E-10		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1203	chr16	81044946	81044947	rs12448368	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	16q23.2	CENPN	rs12448368-C	0.13	7E-11		0.003	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1203	chr16	81065281	81065282	rs10083777	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	16q23.2	GCSH, ATMIN, LOC102724325, TFBS	rs10083777-T	0.17	3E-13	(Glycine)	0.11	[0.09-0.13] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1203	chr16	81066338	81066339	rs77874075	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	16q23.2	CENPN	rs77874075-G	0.22	5E-9		0.03	NR unit decrease	Illumina [9591901] (imputed)	N
1203	chr16	81066338	81066339	rs77874075	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	16q23.2	CENPN	rs77874075-G	0.09	5E-25		0.021	unit increase	NR [NR]	N
1203	chr16	81068747	81068748	rs62054589	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16q23.2		rs62054589-T	0.875	2E-10		0.11	[0.07-0.14] % increase	Affymetrix [NR] (imputed)	N
1203	chr16	81070007	81070008	rs12935418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16q23.2	NR	rs12935418-C	0.12344	2E-23		0.02759	[0.022-0.033] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1203	chr16	81070007	81070008	rs12935418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16q23.2	NR	rs12935418-C	0.124614	1E-15		0.023398	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1203	chr16	81070007	81070008	rs12935418	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q23.2	ATMIN	rs12935418-C	0.1239	1E-10		0.03472712	[0.024-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q23.2		rs2602431-G	NR	1E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q23.2		rs2602431-G	NR	2E-8		0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q23.2	ATMIN	rs2602431-G	0.875063	7E-15		0.0249536	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q23.2	ATMIN	rs2602431-G	0.875089	1E-11		0.022553796	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs2602431-G	0.835042	2E-23				Affymetrix, Illumina [24246363] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs2602431-G	0.831757	3E-15				Affymetrix, Illumina [20825802] (imputed)	N
1203	chr16	81070696	81070697	rs2602431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q23.2		rs2602431-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1203	chr16	81110902	81110903	rs9923732	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	16q23.2	C16orf46, GCSH	rs9923732-A	0.914	1E-41		0.119	[0.097-0.141] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1203	chr16	81113671	81113672	rs4889229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	16q23.2		rs4889229-C	0.0825838	7E-62		0.117698	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
1203	chr16	81124274	81124275	rs8177876	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	16q23.2	NR	rs8177876-G	0.9353	8E-7		0.1806	[0.11-0.25] unit increase	Illumina [up to 1980188] (imputed)	N
1203	chr16	81132492	81132493	rs11860711	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	16q23.2	GCSH	rs11860711-C	0.799952	4E-31		0.123689	[0.1-0.14] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1203	chr16	81132492	81132493	rs11860711	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	16q23.2	GCSH	rs11860711-C	0.799952	1E-18		0.116159	[0.09-0.142] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1203	chr16	81132492	81132493	rs11860711	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	16q23.2	GCSH	rs11860711-C	0.799952	7E-15		0.136637	[0.1-0.17] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1204	chr16	81142357	81142358	rs4520846	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	16q23.2	NR	rs4520846-A	0.3534	3E-8	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1204	chr16	81143960	81143961	rs4888124	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	16q23.2	PKD1L2	rs4888124-A	0.2266	2E-11	(Glycine)	0.1034	[0.073-0.134] unit decrease	Illumina [~ 47000000] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-T		1E-8	(Gly)	0.21	[0.13-0.29] unit decrease	Illumina [1288202] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-?		9E-7	(Gly (adjusted for Phe))			Illumina [1288202] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-?		8E-8	(Gly (adjusted for Ser))			Illumina [1288202] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-?		8E-6	(Gly (adjusted for Asn))			Illumina [1288202] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-?		4E-6	(Gly (adjusted for Pro))			Illumina [1288202] (imputed)	N
1204	chr16	81145674	81145675	rs8059153	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	16q23.2	PKD1L2	rs8059153-?	NR	9E-7	(Gly)			Illumina [1288202] (imputed)	N
1204	chr16	81149441	81149442	rs7187566	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	16q23.2	NR	rs7187566-A	0.99	4E-6	(Asian)	1.17	[0.67-1.67] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1204	chr16	81150558	81150559	rs11647428	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	16q23.2	NR	rs11647428-G	0.4904	2E-28	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1204	chr16	81152278	81152279	rs62051533	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	16q23.2	NR	rs62051533-C	0.3231	3E-11	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1204	chr16	81153186	81153187	rs8044232	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	16q23.2		rs8044232-C	0.0267059	8E-32		0.142559	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1204	chr16	81156521	81156522	rs4889240	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	16q23.2	PKD1L2, C16orf46	rs4889240-T	0.45	7E-6				Perlegen [378332]	N
1204	chr16	81156807	81156808	rs16954688	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	16q23.2	NR	rs16954688-G	0.9528	5E-14	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1204	chr16	81157352	81157353	rs16954698	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	16q23.2	PKD1L2	rs16954698-?	NR	2E-12	(Gly)	0.082412206	NR unit decrease	Illumina [609262]	N
1204	chr16	81157352	81157353	rs16954698	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	16q23.2	PKD1L2	rs16954698-?	NR	1E-9	(Gly)	0.08013647	NR unit decrease	Illumina [609262]	N
1204	chr16	81161294	81161295	rs17184291	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	16q23.2	NR	rs17184291-?	NR	5E-7		0.06192	[0.038-0.086] unit decrease	Affymetrix [9658292] (imputed)	N
1204	chr16	81168422	81168423	rs141686321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	16q23.2		rs141686321-T	0.968919	1E-9		0.0690785	[0.047-0.091] unit increase	NR [11722792] (imputed)	N
1204	chr16	81173055	81173056	rs62053173	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	16q23.2	PKD1L2	rs62053173-?	NR	2E-6		5.12	[2.6-10.08]	Illumina [8600000] (imputed)	N
1204	chr16	81184938	81184939	rs55788414	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	16q23.2	PKD1L2	rs55788414-?	NR	6E-8		5.815446	[3.082993-10.969667]	Illumina [at least 4756722] (imputed)	N
1204	chr16	81188295	81188296	rs56712192	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	16q23.2		rs56712192-?	NR	4E-6		0.13	[0.075-0.185] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1204	chr16	81209714	81209715	rs873693	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16q23.2	NR	rs873693-A	0.2823	2E-10		0.0841	[0.058-0.11] unit increase	Illumina [~ 10600000] (imputed)	N
1204	chr16	81256712	81256713	rs4889286	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q23.2	PKD1L2, BCMO1	rs4889286-C	0.517863	8E-15	(carotene diol (2))	0.173	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
1204	chr16	81256712	81256713	rs4889286	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q23.2	PKD1L2, BCMO1	rs4889286-C	0.517863	4E-23	(carotene diol (1))	0.218	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
1204	chr16	81258986	81258987	rs12926540	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Carotenoid levels	up to 1,200 European ancestry individuals	NA	16q23.2	PKD1L2, BCMO1	rs12926540-?	NR	7E-11	(Beta carotene)			Illumina [up to 10879115] (imputed)	N
1204	chr16	81259265	81259266	rs56389890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16q23.2		rs56389890-T	NR	1E-8		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1204	chr16	81260785	81260786	rs9708919	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Carotenoid levels	up to 1,200 European ancestry individuals	NA	16q23.2	PKD1L2, BCMO1	rs9708919-?	NR	8E-14	(Lutein)			Illumina [up to 10879115] (imputed)	N
1204	chr16	81264596	81264597	rs6564851	19185284	Ferrucci L	2009-01-29	Am J Hum Genet	Common variation in the beta-carotene 15,15'-monooxygenase 1 gene affects circulating levels of carotenoids: a genome-wide association study.	Carotenoid and tocopherol levels	1,191 European ancestry individuals	2,540 European ancestry individuals, 211 individuals	16q23.2	BCMO1	rs6564851-G	0.39	2E-24	(beta-carotene)	0.15	[0.120-0.177] umol/L increase	Illumina [~ 500451]	N
1205	chr16	81303758	81303759	rs4889294	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	16q23.2	BCM01	rs4889294-?	0.47	5E-7	(IL1B)			Illumina [496032]	N
1205	chr16	81370139	81370140	rs142313660	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.2	GAN	rs142313660-T	0.998	1E-6	(AA)	1.264	NR unit increase	Illumina [NR] (imputed)	N
1205	chr16	81372589	81372590	rs28497028	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.2	GAN	rs28497028-A	0.998	9E-7	(AA)	1.097	NR unit increase	Illumina [NR] (imputed)	N
1205	chr16	81375851	81375852	rs143522076	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.2	GAN	rs143522076-G	0.998	8E-7	(AA)	1.091	NR unit increase	Illumina [NR] (imputed)	N
1205	chr16	81393014	81393015	rs4889312	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	16q23.2	GAN	rs4889312-T	NR	5E-6		0.02729	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
1206	chr16	81402279	81402279	rs78625038	33662382	Rogne T	2021-03-01	J Invest Dermatol	Genome-Wide Association Study Identifies LINC01184/SLC12A2 As Risk Locus for Skin and Soft Tissue Infections.	Skin and soft tissue infections	6,107 European ancestry cases and 399,239 European ancestry controls	1,657 European ancestry cases and 67,522 European ancestry controls	16q23.2	GAN	rs78625038-CT	0.006	6E-8		1.86	[1.48-2.32]	Affymetrix, Illumina [9211777] (imputed)	N
1206	chr16	81457658	81457659	rs8044853	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts	5,503 European, Black, and other ancestry cases age 50 and older, 1,894 European, Black, and other ancestry controls age 50 and older	NA	16q23.2	CMIP, GAN	rs8044853-?	0.665	2E-6		1.41	[NR]	Illumina [530101]	N
1206	chr16	81460476	81460477	rs2447470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2447470-G	NR	8E-9		0.0183441	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81460476	81460477	rs2447470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2447470-G	NR	1E-8		0.0180854	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81460476	81460477	rs2447470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2447470-G	NR	2E-10		0.0201757	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1206	chr16	81460968	81460969	rs2550766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2550766-C	NR	8E-12		0.0194907	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81460968	81460969	rs2550766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2550766-C	NR	3E-11		0.01891	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81460968	81460969	rs2550766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2550766-C	NR	7E-9		0.0164853	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1206	chr16	81466563	81466564	rs12920507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs12920507-A	NR	7E-10		0.0248341	[0.017-0.033] unit increase	Affymetrix [321016] (imputed)	N
1206	chr16	81470786	81470787	rs310016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs310016-C	NR	2E-10		0.0182266	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81470786	81470787	rs310016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs310016-C	NR	5E-10		0.0178462	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81473648	81473649	rs310008	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	16q23.2	CMIP	rs310008-G	0.13392	4E-6		0.1076	[0.062-0.153] year decrease	Illumina [2310762] (imputed)	N
1206	chr16	81489372	81489373	rs16955379	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	16q23.2	CMIP	rs16955379-C	0.80	3E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [2626356] (imputed)	N
1206	chr16	81491080	81491081	rs11150388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs11150388-G	NR	9E-12		0.0196358	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81491080	81491081	rs11150388	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q23.2	NR	rs11150388-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1206	chr16	81492642	81492643	rs9746731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs9746731-A	NR	8E-12		0.0198564	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81497951	81497952	rs898962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs898962-A	NR	3E-12		0.0201569	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81497951	81497952	rs898962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs898962-A	NR	5E-12		0.0199067	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81498295	81498296	rs8044403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs8044403-T	NR	4E-9		0.0187245	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81498295	81498296	rs8044403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs8044403-T	NR	2E-9		0.0190891	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81506592	81506593	rs17674099	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs17674099-A	NR	4E-8		0.042351	[0.027-0.058] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81509721	81509722	rs2927328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP, RP11-391L3.5	rs2927328-T	NR	9E-12		0.020338	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1206	chr16	81510045	81510046	rs2925999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP, RP11-391L3.5	rs2925999-C	NR	3E-14		0.0229651	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81510045	81510046	rs2925999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP, RP11-391L3.5	rs2925999-C	NR	1E-14		0.0232128	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81510045	81510046	rs2925999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP, RP11-391L3.5	rs2925999-C	NR	4E-8		0.0167901	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1206	chr16	81511533	81511534	rs2927327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927327-T	NR	4E-27		0.0314875	[0.026-0.037] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81511533	81511534	rs2927327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927327-T	NR	7E-27		0.0313197	[0.026-0.037] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81511533	81511534	rs2927327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927327-T	NR	5E-15		0.0236846	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1206	chr16	81511533	81511534	rs2927327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927327-T	NR	3E-13		0.0214809	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
1206	chr16	81512759	81512760	rs56320921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q23.2		rs56320921-T	NR	4E-8		0.0189	[0.012-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1206	chr16	81512759	81512760	rs56320921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.2	CMIP	rs56320921-T	0.070175	4E-10		0.027111841	[0.019-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1206	chr16	81512759	81512760	rs56320921	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q23.2	CMIP	rs56320921-T	0.070191	3E-9		0.025616717	[0.017-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1206	chr16	81512759	81512760	rs56320921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q23.2	NR	rs56320921-T	0.07007	3E-11		0.026098	[0.018-0.034] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1206	chr16	81512759	81512760	rs56320921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q23.2		rs56320921-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1206	chr16	81513870	81513871	rs12928482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q23.2		rs12928482-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1206	chr16	81513870	81513871	rs12928482	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.2	CMIP	rs12928482-G		4E-6		0.196	unit increase	Affymetrix [at least 2696785] (imputed)	N
1206	chr16	81513870	81513871	rs12928482	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.2	CMIP	rs12928482-G		2E-8		0.147	unit increase	Affymetrix [at least 2696785] (imputed)	N
1206	chr16	81515639	81515640	rs35081994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs35081994-T	NR	9E-20		0.0259381	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81515639	81515640	rs35081994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs35081994-T	NR	3E-19		0.025571	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81515639	81515640	rs35081994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs35081994-T	NR	8E-13		0.0211556	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
1206	chr16	81515639	81515640	rs35081994	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs35081994-T	NR	1E-8		0.0163289	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1206	chr16	81515721	81515722	rs2966083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966083-G	NR	1E-12		0.0203006	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1206	chr16	81516227	81516228	rs7187136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs7187136-T	NR	3E-10		0.0223051	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81516227	81516228	rs7187136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs7187136-T	NR	2E-10		0.0225403	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81516633	81516634	rs2966085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966085-A	NR	2E-35		0.0366717	[0.031-0.042] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81516633	81516634	rs2966085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966085-A	NR	4E-35		0.0365234	[0.031-0.042] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81516633	81516634	rs2966085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966085-A	NR	5E-18		0.0265129	[0.021-0.033] unit decrease	Affymetrix [321788] (imputed)	N
1206	chr16	81516633	81516634	rs2966085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966085-A	NR	1E-17		0.0255499	[0.02-0.031] unit increase	Affymetrix [321169] (imputed)	N
1206	chr16	81516857	81516858	rs2966086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966086-T	NR	2E-25		0.033677	[0.027-0.04] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81516857	81516858	rs2966086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966086-T	NR	3E-25		0.0336575	[0.027-0.04] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81516857	81516858	rs2966086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966086-T	NR	3E-14		0.0255165	[0.019-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1206	chr16	81516857	81516858	rs2966086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966086-T	NR	1E-12		0.0231506	[0.017-0.03] unit increase	Affymetrix [321169] (imputed)	N
1206	chr16	81516929	81516929	rs199701253	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	16q23.2	NR	rs199701253-?	NR	1E-6		0.0788	[0.047-0.111] unit increase	Illumina [at least 560000] (imputed)	N
1206	chr16	81516931	81516931	rs34106287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs34106287-G	NR	1E-15		0.0232456	[0.018-0.029] unit increase	Affymetrix [321114] (imputed)	N
1206	chr16	81517118	81517119	rs16955433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q23.2	NR	rs16955433-T	NR	6E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1206	chr16	81517118	81517119	rs16955433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q23.2	NR	rs16955433-T	NR	8E-19		0.0277	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1206	chr16	81517118	81517119	rs16955433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q23.2	NR	rs16955433-T	NR	4E-14		0.0237	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1206	chr16	81518145	81518146	rs898970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs898970-T	NR	2E-13		0.0218489	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81518145	81518146	rs898970	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs898970-T	NR	2E-12		0.0211254	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81521293	81521294	rs2125202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2125202-G	NR	3E-18		0.0247321	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81521293	81521294	rs2125202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2125202-G	NR	1E-17		0.0243746	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
1206	chr16	81521293	81521294	rs2125202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2125202-G	NR	4E-10		0.0184314	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
1206	chr16	81521293	81521294	rs2125202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2125202-G	NR	7E-9		0.016636	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1206	chr16	81521707	81521708	rs57795729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs57795729-C	NR	6E-19		0.0279235	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
1206	chr16	81523012	81523013	rs17197883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs17197883-C	NR	9E-9		0.0184417	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81523012	81523013	rs17197883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs17197883-C	NR	6E-9		0.0187072	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	16q23.2		rs12443634-C	NR	4E-9		0.0442	[0.03-0.059] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q23.2	CMIP	rs12443634-A	0.285845	2E-8		0.0130017	[0.0085-0.0176] unit increase	Affymetrix [NR] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	16q23.2	CMIP, CMC2, CENPN, ATMIN, C16orf46, GCSH, PKD1L2, BCMO1, GAN, MIR4720, LOC100129617, PLCG2	rs12443634-A	0.2871	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	16q23.2	CMIP	rs12443634-A	0.29	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	16q23.2	CMIP, CMC2, CENPN, ATMIN, C16orf46, GCSH, PKD1L2, BCMO1, GAN, MIR4720, LOC100129617, PLCG2	rs12443634-A	0.287082199203087	4E-6	(women)	0.0327	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1206	chr16	81524273	81524274	rs12443634	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	16q23.2	CMIP	rs12443634-A	0.29	3E-8	(women)	0.031	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1206	chr16	81525203	81525204	rs62043959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	16q23.2		rs62043959-C	NR	8E-9		0.0482	[0.032-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1206	chr16	81525203	81525204	rs62043959	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	16q23.2	CMIP	rs62043959-C	0.27972	1E-8		0.05248066	[0.034-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1207	chr16	81526976	81526977	rs881005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16q23.2		rs881005-A	NR	2E-9		0.0546	[0.037-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1207	chr16	81526976	81526977	rs881005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q23.2		rs881005-A	NR	4E-12		0.0482	[0.034-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1207	chr16	81527740	81527741	rs74986809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs74986809-G	NR	1E-9		0.0253337	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81527740	81527741	rs74986809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs74986809-G	NR	6E-10		0.0258493	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81528620	81528621	rs66710707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs66710707-G	NR	2E-11		0.021306	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1207	chr16	81528620	81528621	rs66710707	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q23.2	NR	rs66710707-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1207	chr16	81529418	81529419	rs2966090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966090-C	NR	1E-10		0.0192002	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr16	81529418	81529419	rs2966090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q23.2	CMIP	rs2966090-C	0.350488	4E-9		0.013835037	[0.0092-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr16	81530597	81530598	rs7192108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q23.2		rs7192108-G	NR	2E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1207	chr16	81531028	81531029	rs2925995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925995-T	NR	2E-8		0.0175766	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs56823429-C	0.298399	3E-9		0.0258	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs56823429-C	0.298399	3E-9		0.0249022	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs56823429-C	NR	4E-13		0.0224299	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q23.2	NR	rs56823429-C	0.2685	3E-20		0.0418	[0.033-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q23.2	NR	rs56823429-C	0.298021	4E-8		0.0117258	[0.0075-0.0159] unit increase	NR [NR]	N
1207	chr16	81533788	81533789	rs56823429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs56823429-C	NR	8E-12		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs56823429-C	0.283	2E-10	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs56823429-C	NR	3E-20		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs56823429-C	0.283	2E-17	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81533788	81533789	rs56823429	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	16q23.2	CMIP	rs56823429-A	0.71	2E-8		0.037	[0.023-0.051] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1207	chr16	81533921	81533922	rs11641142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs11641142-G	NR	5E-19		0.0281007	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81533921	81533922	rs11641142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs11641142-G	NR	2E-19		0.0283999	[0.022-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81533921	81533922	rs11641142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs11641142-G	NR	6E-9		0.0190687	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1207	chr16	81533921	81533922	rs11641142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs11641142-G	NR	5E-8		0.0171964	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-18		0.0375547	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301196	2E-10		0.0278027	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301066	2E-20		0.0392521	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-13		0.032056	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-14		0.0334393	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-24		0.0430113	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-15		0.0340134	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-10		0.0273598	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-20		0.0398522	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-12		0.0300115	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-21		0.039991	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	8E-17		0.0359708	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-12		0.0308918	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-16		0.0350135	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-18		0.03805	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-12		0.03039	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	9E-18		0.0372929	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-13		0.0322674	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-10		0.0271121	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-14		0.0327438	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-10		0.0280792	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	8E-15		0.03356	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-8		0.024429	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-8		0.0252504	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-14		0.0329686	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-15		0.0339691	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-15		0.0316963	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-10		0.0279807	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-11		0.0272143	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-14		0.0332224	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-20		0.0360196	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-11		0.0294896	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	8E-11		0.0286563	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-15		0.0321856	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-9		0.0252709	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301015	3E-23		0.0413917	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301015	2E-10		0.0276226	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301015	7E-12		0.0295931	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-10		0.0270007	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301066	6E-10		0.0255118	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-17		0.0367616	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	9E-11		0.0279998	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-17		0.0355496	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301049	3E-10		0.0275637	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-14		0.0329755	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-14		0.0311282	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-8		0.0240405	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-15		0.0347658	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-19		0.0351136	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-14		0.0325155	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-9		0.0258826	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-13		0.0298566	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-21		0.0379963	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-11		0.0296424	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301196	9E-10		0.0266503	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301066	3E-13		0.0290024	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-17		0.0366812	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-10		0.0269101	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-13		0.0312484	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-14		0.0327563	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	9E-17		0.0330254	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-20		0.0390907	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-13		0.0320099	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-13		0.0301558	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	9E-14		0.0303773	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-14		0.0333669	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	8E-20		0.0357845	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-12		0.0306254	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-16		0.0326831	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-15		0.0343491	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-13		0.0294719	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-11		0.0299831	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-13		0.0296457	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-15		0.0338157	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-20		0.0358582	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-13		0.0310712	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-10		0.0270852	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-21		0.039687	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301196	4E-13		0.0312783	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-17		0.0359735	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-16		0.0358698	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301049	5E-9		0.0251747	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-17		0.0361275	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-12		0.0300124	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-10		0.0273532	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-18		0.0351229	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-17		0.0345613	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-10		0.0276729	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-23		0.0393347	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	5E-12		0.0300075	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-22		0.0392145	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-19		0.0384514	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301196	3E-13		0.0313692	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	3E-11		0.0290974	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-16		0.0350573	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-20		0.0395607	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-9		0.0265499	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	8E-19		0.0373855	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-14		0.0336785	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-12		0.0300639	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-17		0.0344282	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-16		0.033853	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-12		0.0310168	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	1E-22		0.0385631	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	2E-12		0.0305925	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	4E-15		0.0329695	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	7E-17		0.0331041	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	16q23.2		rs2925979-T	0.301051	6E-13		0.0296009	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q23.2		rs2925979-C	NR	2E-11		0.0446	[0.031-0.058] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q23.2		rs2925979-C	NR	6E-40		0.0287	[0.024-0.033] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q23.2		rs2925979-C	NR	2E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	16q23.2		rs2925979-C	0.662106	3E-13		0.0362758	[0.027-0.046] unit increase	Illumina [13465896] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q23.2		rs2925979-C	NR	7E-60		0.0362	[0.032-0.041] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925979-T	NR	4E-58		0.0495027	[0.043-0.056] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925979-T	NR	4E-58		0.0494952	[0.043-0.056] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925979-T	NR	2E-36		0.0391079	[0.033-0.045] unit increase	Affymetrix [321114] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925979-T	NR	5E-23		0.031569	[0.025-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2925979-T	NR	1E-33		0.0375444	[0.031-0.044] unit increase	Affymetrix [321169] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	2E-36		0.0326	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	6E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	1E-48		0.0396	[0.034-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	2E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	1E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-C	NR	3E-27		0.0293	[0.024-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q23.2	CMIP	rs2925979-?		2E-18		0.0393	[0.03-0.048] unit increase	Illumina [31500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.2999	2E-11		0.0138	[0.0099-0.0177] unit increase	Affymetrix [18391927] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	16q23.2		rs2925979-C	0.69	7E-7		0.08	[0.041-0.119] unit increase	Illumina [16607452] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q23.2	NR	rs2925979-C	0.6916	2E-19		0.0448	[0.035-0.055] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	16q23.2	CMIP	rs2925979-T	0.364	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.300025	1E-49		0.0321923	[0.028-0.036] unit increase	Affymetrix [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.300003	2E-73		0.0372895	[0.033-0.041] unit decrease	Affymetrix [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.30013	7E-41		0.0285198	[0.024-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16q23.2	CMIP	rs2925979-?	NR	9E-33		0.0341	[0.029-0.039] unit increase	Affymetrix [5701386] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q23.2	NR	rs2925979-C	0.699431	2E-16		0.00692337	[0.0051-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16q23.2	NR	rs2925979-C	0.6997720000000001	1E-26		0.0135186	[0.011-0.016] unit increase	Affymetrix [16585854] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q23.2	NR	rs2925979-C	0.699431	6E-14		0.00695394	[0.005-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16q23.2	NR	rs2925979-C	0.6997720000000001	3E-20		0.0133759	[0.01-0.016] unit increase	Affymetrix [16585866] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	16q23.2	CMIP	rs2925979-?	NR	2E-13		0.007319	[0.0053-0.0094] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q23.2	NR	rs2925979-?	NR	9E-41				Affymetrix [~ 8270000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q23.2	NR	rs2925979-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.301767	3E-18		0.0616096	[0.048-0.075] unit increase	Affymetrix [9463307] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	16q23.2	NR	rs2925979-?	NR	1E-6		0.6239357	[0.37-0.88] unit increase	Illumina [31978362] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	16q23.2	CMIP	rs2925979-C	0.692648124975447	6E-36		0.07903342	unit increase	Illumina [265780]	N
1207	chr16	81534789	81534790	rs2925979	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	16q23.2		rs2925979-T	0.3098	3E-12		0.0082	[0.0058-0.0106] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	5E-21				Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	4E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	1E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	7E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	7E-21				Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	7E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	9E-8	(Asian)	0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	4E-19		0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	1E-10	(EA)	0.018	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	7E-7	(EA)	0.019	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	4E-12		0.014	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	2E-6	(Asian)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	8E-39				Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	5E-14	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	16q23.2	CMIP	rs2925979-C	NR	1E-22	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	5E-28	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	2E-14	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	16q23.2	CMIP	rs2925979-C	NR	1E-44				Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	8E-32		0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	4E-18	(EA)	0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	4E-12	(Asian)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	5E-12	(Asian)	0.009265	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	3E-13	(EA)	0.01236	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	16q23.2	CMIP	rs2925979-C	NR	2E-25		0.01033	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	16q23.2	NR	rs2925979-T	0.2997	1E-19				Affymetrix, Illumina [at least 2500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q23.2		rs2925979-?	NR	1E-34				NR [~ 8900000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	16q23.2	NR	rs2925979-T	0.3	2E-37		0.024	[0.02-0.028] unit increase	Affymetrix [2446094] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	16q23.2	NR	rs2925979-T	0.3	5E-8				Affymetrix [2446094] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q23.2	CMIP	rs2925979-T	0.2996	1E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q23.2	CMIP	rs2925979-T	0.2951	3E-10		0.0181	[0.012-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q23.2	CMIP	rs2925979-T	0.2955	6E-27		0.0309	[0.025-0.037] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16q23.2	NR	rs2925979-T	0.2959	7E-46		0.0265	[0.023-0.03] unit increase	NR [~ 27400000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q23.2	NA	rs2925979-T	0.2958	2E-31		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16q23.2	NR	rs2925979-T	0.2958	2E-31		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	16q23.2	CMIP	rs2925979-T	0.299149855500384	9E-12		0.0534	[0.038-0.069] unit increase	NR [5035015] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-T	NR	2E-12		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-T	0.294	3E-10	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-T	NR	3E-21		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.2	NR	rs2925979-T	0.294	5E-18	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	16q23.2	CMIP	rs2925979-?	NR	7E-13		0.03966	[0.029-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q23.2	CMIP	rs2925979-T	0.29	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	16q23.2	CMIP	rs2925979-C	0.7117	8E-7	(EA)	0.0554	[0.033-0.077] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	16q23.2	CMIP	rs2925979-T	0.3	2E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q23.2	CMIP	rs2925979-T	0.3008	2E-8	(EA, women)	0.0317	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q23.2	CMIP	rs2925979-?	0.3008	2E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	16q23.2	CMIP	rs2925979-?	0.3008	2E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q23.2	CMIP	rs2925979-T	0.3065	2E-6		0.0193	[0.011-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	16q23.2	CMIP	rs2925979-T	0.3065	1E-10	(women)	0.0357	[0.025-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	16q23.2	CMIP	rs2925979-T	0.295	9E-22	(Trans-ethnic initial)	0.0351	[0.028-0.042] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	16q23.2	NR	rs2925979-T	0.305441971387991	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	16q23.2	NR	rs2925979-T	0.305441971387991	5E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q23.2	CMIP	rs2925979-T	0.3069	1E-7		0.019	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q23.2	CMIP	rs2925979-T	0.3065	7E-13	(women)	0.0342	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q23.2	CMIP	rs2925979-T	0.306	1E-6	(EA)	0.0178	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q23.2	CMIP	rs2925979-T	0.3055	3E-11	(EA, women)	0.0323	[0.023-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	16q23.2	CMIP	rs2925979-T	0.411	2E-10		0.08	[0.060-0.100] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	16q23.2	CMIP	rs2925979-T	0.31	1E-19		0.035	[NR] unit decrease	NR [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.30	3E-21		0.04	[0.032-0.048] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81534789	81534790	rs2925979	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	16q23.2	CMIP	rs2925979-T	0.3	2E-11		0.45	[0.29-0.61] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1207	chr16	81536190	81536191	rs55683214	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16q23.2	CMIP	rs55683214-T	0.253547	8E-13		0.04967616	[0.036-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
1207	chr16	81538462	81538463	rs62046579	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16q23.2	CMIP	rs62046579-C	0.257233	8E-10		0.055429168	[0.038-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	4E-32		0.0337738	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	3E-31		0.033274	[0.028-0.039] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	6E-18		0.0249364	[0.019-0.031] unit increase	Affymetrix [321114] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	4E-13		0.0215573	[0.016-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	3E-10		0.017952	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1207	chr16	81543831	81543832	rs2927307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927307-G	NR	1E-17		0.0247134	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	9E-31		0.0328177	[0.027-0.038] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	5E-30		0.0324296	[0.027-0.038] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	2E-15		0.0228257	[0.017-0.028] unit increase	Affymetrix [321114] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	1E-13		0.0218225	[0.016-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	4E-12		0.0197202	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1207	chr16	81545902	81545903	rs2927305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2927305-T	NR	2E-16		0.0235922	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
1207	chr16	81547654	81547656	rs200324483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs200324483-C	NR	2E-16		0.0251804	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81547654	81547656	rs200324483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs200324483-C	NR	1E-16		0.0253181	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1207	chr16	81547654	81547656	rs200324483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs200324483-C	NR	1E-9		0.0188588	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1207	chr16	81547654	81547656	rs200324483	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs200324483-C	NR	1E-10		0.0198314	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1207	chr16	81550115	81550116	rs79950365	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.2	NR	rs79950365-G	NR	8E-11		0.0301	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81550650	81550651	rs2966100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966100-G	NR	2E-15		0.0225319	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81550650	81550651	rs2966100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966100-G	NR	4E-15		0.0222668	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1207	chr16	81550650	81550651	rs2966100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966100-G	NR	2E-10		0.0180954	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1207	chr16	81550650	81550651	rs2966100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q23.2	CMIP	rs2966100-G	NR	1E-8		0.0163493	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1207	chr16	81556908	81556909	rs9806885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.2	NR	rs9806885-G	NR	2E-13		0.0275	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81559008	81559009	rs4888151	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs4888151-?	NR	3E-21		0.0224068	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81559008	81559009	rs4888151	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q23.2	CMIP	rs4888151-A	0.260002	9E-6	(men)	0.0255168	[0.014-0.037] unit increase	NR [17166351] (imputed)	N
1207	chr16	81559008	81559009	rs4888151	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q23.2	CMIP	rs4888151-A	0.259284	9E-11		0.0251563	[0.018-0.033] unit increase	NR [17166351] (imputed)	N
1207	chr16	81559008	81559009	rs4888151	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q23.2	CMIP	rs4888151-A	0.258657	8E-6	(women)	0.0243553	[0.014-0.035] unit increase	NR [17166351] (imputed)	N
1207	chr16	81566120	81566121	rs12933858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q23.2		rs12933858-T	NR	6E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1207	chr16	81570477	81570478	rs9928591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	16q23.2	NR	rs9928591-T	NR	3E-19		0.048	[0.038-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr16	81571599	81571600	rs876672	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	16q23.2	CMIP	rs876672-G	0.080104	4E-6		0.637283	[0.37-0.91] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1207	chr16	81572092	81572093	rs11644696	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	16q23.2	CMIP	rs11644696-A	0.4077	6E-9		0.0193	[0.013-0.026] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1207	chr16	81572092	81572093	rs11644696	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	16q23.2	CMIP	rs11644696-A	0.4766	1E-8		0.022064	[0.014-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1207	chr16	81573975	81573976	rs2061679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	16q23.2	NR	rs2061679-T	0.06627000000000005	2E-36		0.0332963	[0.028-0.038] unit increase	Affymetrix [16578495] (imputed)	N
1207	chr16	81574196	81574197	rs8059962	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q23.2	CMIP	rs8059962-T	0.42	1E-9		0.17	[0.11-0.23] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1207	chr16	81578705	81578706	rs62046625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.2		rs62046625-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1207	chr16	81579922	81579923	rs12932885	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs12932885-?	NR	4E-37		0.0252506	[0.021-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81582439	81582440	rs28377284	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q23.2	CMIP	rs28377284-C	0.196	7E-21		0.0225	[0.018-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
1207	chr16	81586900	81586901	rs35610022	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q23.2	NR	rs35610022-T	0.5206	1E-9		0.001374	[0.00093-0.00182] unit increase	Affymetrix [NR] (imputed)	N
1207	chr16	81588570	81588571	rs76006132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	16q23.2	NR	rs76006132-T	0.06991199999999997	1E-16		0.0322757	[0.025-0.04] unit increase	Affymetrix [16583148] (imputed)	N
1207	chr16	81589566	81589567	rs1000454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q23.2		rs1000454-?	NR	1E-36				NR [~ 8900000] (imputed)	N
1207	chr16	81590540	81590541	rs58072681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	16q23.2	NR	rs58072681-C	0.07034200000000002	8E-86		0.108156	[0.097-0.119] unit increase	Affymetrix [16580851] (imputed)	N
1207	chr16	81590540	81590541	rs58072681	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	16q23.2	NR	rs58072681-C	0.07002299999999995	8E-36		0.0610878	[0.051-0.071] unit increase	Affymetrix [16585745] (imputed)	N
1207	chr16	81590844	81590845	rs11639751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	16q23.2		rs11639751-G	NR	2E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1207	chr16	81590961	81590962	rs57159061	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	16q23.2	NR	rs57159061-C	0.075	2E-8		0.117829	[0.077-0.159] unit increase	Affymetrix [up to 8900000] (imputed)	N
1207	chr16	81591247	81591248	rs2966114	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q23.2	NR	rs2966114-C	0.370469	2E-8		0.0394673	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1207	chr16	81591312	81591313	rs2911280	28887542	Prins BP	2017-09-08	Sci Rep	Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations.	Dehydroepiandrosterone sulphate levels	5,414 European ancestry women, 4,308 European ancestry men	9,888 European ancestry individuals, 16,013 individuals	16q23.2	CMIP	rs2911280-A	0.08	6E-10		0.09	[0.070-0.110] unit increase	Illumina [at least 23756480] (imputed)	N
1207	chr16	81592748	81592751	rs149523885	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q23.2	CMIP	rs149523885-?	NR	1E-6		0.015449054	[0.0093-0.0216] unit decrease	Illumina [27896057] (imputed)	N
1207	chr16	81597956	81597957	rs7203816	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	16q23.2	CMIP	rs7203816-A	0.31252	1E-9		0.05267166	[0.036-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1207	chr16	81599531	81599532	rs1991042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q23.2	CMIP	rs1991042-A	0.490527	1E-11		0.01506716	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMC	5,366 Icelandic ancestry individuals	NA	16q23.2		rs12930850-G	0.4928	2E-21		0.169651	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs12930850-G	0.458787	6E-18				Affymetrix, Illumina [24649327] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q23.2	NR	rs12930850-G	0.536437	6E-19		0.016523	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q23.2	NR	rs12930850-G	0.537098	1E-22		0.018982	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q23.2	NR	rs12930850-G	0.537174	2E-11		0.012604	[0.0089-0.0163] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1207	chr16	81602211	81602212	rs12930850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q23.2		rs12930850-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1207	chr16	81602263	81602264	rs12929303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q23.2		rs12929303-A	NR	2E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1207	chr16	81603124	81603125	rs77297149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	16q23.2	NR	rs77297149-T	NR	9E-11		0.033	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1207	chr16	81603399	81603400	rs8045100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q23.2		rs8045100-T	NR	8E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1207	chr16	81603399	81603400	rs8045100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q23.2	CMIP	rs8045100-T	0.540783	3E-21		0.021048956	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr16	81603399	81603400	rs8045100	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.2	NR	rs8045100-T	0.485318	6E-21				Affymetrix, Illumina [23114412] (imputed)	N
1207	chr16	81603770	81603771	rs8044524	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs8044524-?	NR	3E-26		0.0203394	[0.016-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81603847	81603848	rs11640346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q23.2	CMIP	rs11640346-T	0.536617	1E-11		0.015013991	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr16	81603847	81603848	rs11640346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16q23.2	CMIP	rs11640346-T	0.536614	8E-10		0.0136699695	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1207	chr16	81604250	81604251	rs4889341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q23.2		rs4889341-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1207	chr16	81604250	81604251	rs4889341	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs4889341-?	NR	9E-27		0.0211398	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81607925	81607925	rs397687515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q23.2		rs397687515-TG	NR	1E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1207	chr16	81609297	81609298	rs8045614	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs8045614-?	NR	1E-22		0.0191097	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81609597	81609598	rs7196195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q23.2	CMIP	rs7196195-G	0.579368	1E-16		0.018549673	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1207	chr16	81612540	81612541	rs6564890	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q23.2	CMIP	rs6564890-C	0.461036	2E-38		0.0241986	[0.021-0.028] unit increase	NR [13737936] (imputed)	N
1207	chr16	81613121	81613122	rs4889345	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q23.2		rs4889345-?	NR	8E-21		0.019645	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1207	chr16	81614891	81614892	rs7199293	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q23.2	CMIP	rs7199293-G	0.471994	2E-8		0.0112655	[0.0073-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
1207	chr16	81619266	81619267	rs12597056	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.2	PLCG2	rs12597056-?	NR	9E-6	(phosphoenolpyruvic acid)	1.4871973	[0.83-2.14] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1207	chr16	81637388	81637389	rs13332492	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	16q23.3	CMIP	rs13332492-C	0.1122	7E-6				Illumina [4404269] (imputed)	N
1207	chr16	81638873	81638874	rs76135523	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.3	NR	rs76135523-T	NR	5E-11		0.04	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1207	chr16	81653487	81653488	rs7206411	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	16q23.3		rs7206411-?	NR	2E-7	(clearcell)	1.65		Illumina [11595112] (imputed)	N
1208	chr16	81705970	81705971	rs6564907	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q23.3	NR	rs6564907-C	0.01568	9E-11	(EIF2B1)	0.02039	NR unit increase	Illumina [1671387] (imputed)	N
1208	chr16	81722412	81722413	rs12926506	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q23.3	CMIP	rs12926506-C	0.830398	2E-9		0.011097	[0.0075-0.0147] unit increase	Affymetrix [12370749]	N
1208	chr16	81722531	81722532	rs34895689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.3		rs34895689-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1208	chr16	81728080	81728081	rs2012502	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q23.3	NA	rs2012502-A	0.3826	2E-12		0.0119	[0.0086-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1208	chr16	81728080	81728081	rs2012502	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	16q23.3	NA	rs2012502-A	0.3826	2E-12		0.0119	[0.0086-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1208	chr16	81728608	81728609	rs2317497	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.3	NR	rs2317497-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1208	chr16	81728608	81728609	rs2317497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q23.3		rs2317497-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1208	chr16	81730581	81730582	rs11642090	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	16q23.3	CMIP	rs11642090-T	0.626428	1E-15		0.0117093	[0.0088-0.0146] unit decrease	Affymetrix [12370749]	N
1208	chr16	81735011	81735012	rs3751859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	16q23.3		rs3751859-A	NR	3E-13		0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1208	chr16	81735011	81735012	rs3751859	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.3	NR	rs3751859-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1208	chr16	81745892	81745893	rs8061297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.3	NR	rs8061297-A	NR	5E-16		0.0202	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1208	chr16	81773208	81773209	rs12444183	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	16q23.3	PLCG2	rs12444183-A	0.378	7E-12		0.95	[0.93-0.96]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1208	chr16	81774797	81774798	rs12446319	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	16q23.3	CMIP	rs12446319-A	0.143	9E-6	(Allelic model)	2.026	[1.48-2.774]	Illumina [733202]	N
1208	chr16	81776767	81776768	rs8047955	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.3		rs8047955-A	NR	8E-7		4.9273024	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1209	chr16	81788975	81788975	rs561519875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q23.3	RP11-960L18.1, PLCG2	rs561519875-AT	0.540638	1E-10		0.015218998	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr16	81815750	81815751	rs9944338	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q23.3	PLCG2	rs9944338-G	0.78078125	9E-6	(PLCG2, 10070_22_3)	0.13418503	[0.075-0.193] unit increase	Illumina [> 1000000] (imputed)	N
1209	chr16	81845278	81845279	rs7405072	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	16q23.3	PLCG2	rs7405072-G	0.928356	4E-6		1.1	[1.06-1.14]	NR [8126035] (imputed)	N
1209	chr16	81855942	81855943	rs12596533	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	16q23.3	PLCG2	rs12596533-G	NR	3E-6		3.7889	NR	Illumina [up to 4495750] (imputed)	N
1209	chr16	81858171	81858172	rs4405545	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	16q23.3	PLCG2	rs4405545-G	0.09	2E-6	(Left eyelid medial slant)	0.02	[NR] unit increase	Affymetrix [311944]	N
1209	chr16	81861569	81861570	rs56117891	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	16q23.3	PLCG2	rs56117891-T	0.039	9E-7		0.1296	[0.078-0.181] unit increase	NR [4841651] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q23.3	PLCG2	rs12445050-T	0.137625	1E-9		0.019906625	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q23.3	PLCG2	rs12445050-T	0.137628	2E-10		0.020788124	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q23.3	PLCG2	rs12445050-T	0.137091	9E-13		0.023499994	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q23.3	PLCG2	rs12445050-T	0.137099	2E-27		0.043105587	[0.035-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.3	NR	rs12445050-T	0.127988	7E-15				Affymetrix, Illumina [24588908] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q23.3	NR	rs12445050-T	0.136437	1E-16		0.022312	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.3	NR	rs12445050-C	0.865621	5E-80				Affymetrix, Illumina [17210439] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q23.3	NR	rs12445050-C	0.863118	7E-84		0.054617	[0.049-0.06] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	16q23.3	PLCG2	rs12445050-T	0.1366	2E-21		1.1319027	[1.1-1.16]	Affymetrix [up to 34000000] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	16q23.3	PLCG2	rs12445050-T	NR	7E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [12923718] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	16q23.3	NR	rs12445050-?	NR	4E-13		0.1037	[0.076-0.132] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16q23.3	PLCG2	rs12445050-T	0.1368	9E-10		0.03219974	[0.022-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1209	chr16	81870968	81870969	rs12445050	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	16q23.3	PLCG2	rs12445050-T	0.1369	3E-26		0.05624268	[0.046-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
1209	chr16	81875156	81875157	rs13335344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q23.3	PLCG2	rs13335344-C	0.143822	9E-15		0.024962245	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr16	81876278	81876279	rs8043593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q23.3		rs8043593-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1209	chr16	81880312	81880313	rs79446864	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q23.3	PLCG2	rs79446864-C	0.886859	9E-14	(12-HETE)	0.261	[0.19-0.33] unit decrease	Illumina [13039987] (imputed)	N
1209	chr16	81880312	81880313	rs79446864	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	16q23.3	PLCG2	rs79446864-C	0.886859	9E-14	(12-HETE)	0.261	[0.19-0.33] unit decrease	Illumina [13039987] (imputed)	N
1209	chr16	81881696	81881697	rs78369473	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	16q23.3	NR	rs78369473-C		6E-6		0.2205	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
1209	chr16	81886935	81886936	rs10580524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q23.3		rs10580524-C	NR	4E-12		0.0202	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1209	chr16	81889621	81889622	rs35554443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q23.3	PLCG2	rs35554443-G	0.31723	6E-12		0.02005535	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1209	chr16	81893239	81893240	rs9674332	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	16q23.3	PLCG2	rs9674332-?	NR	9E-6	(conditioned on rs168622)	0.118	[0.065-0.171] unit increase	Affymetrix [9346801] (imputed)	N
1209	chr16	81893719	81893720	rs11642412	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	16q23.3	NR	rs11642412-?	NR	5E-8	(Faecalicoccus)	2.15624	[1.88-2.43]	Illumina [5293637] (imputed)	N
1209	chr16	81895257	81895258	rs28580080	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	16q23.3		rs28580080-T	0.097301547	7E-6		0.02062922	[0.012-0.03] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1209	chr16	81903723	81903724	rs7342692	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	16q23.3	NR	rs7342692-T	0.095	6E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 14542816] (imputed)	N
1209	chr16	81903799	81903800	rs7342694	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q23.3	PLCG2	rs7342694-T	0.398	1E-8		0.037	[0.023-0.051] unit increase	Affymetrix [7947838] (imputed)	N
1209	chr16	81905891	81905892	rs56215311	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16q23.3	PLCG2	rs56215311-?	NR	5E-14		0.0374672	[0.028-0.047] unit decrease	Illumina [4804024] (imputed)	N
1209	chr16	81906422	81906423	rs7199941	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	16q23.3	PLCG2	rs7199941-A	0.3982	9E-13		0.0367	[0.027-0.047] unit increase	Affymetrix [at least 7947838] (imputed)	N
1209	chr16	81906422	81906423	rs7199941	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16q23.3	PLCG2	rs7199941-A	0.3985	9E-13		0.0401	[0.029-0.051] unit increase	NR [8041861] (imputed)	N
1209	chr16	81906638	81906639	rs112911514	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	16q23.3		rs112911514-T	0.93	6E-8		0.0971	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1209	chr16	81916911	81916912	rs11548656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q23.3	NR	rs11548656-G	NR	1E-11		0.0461	[0.033-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1209	chr16	81916911	81916912	rs11548656	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD24- B cell	3,649 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q23.3		rs11548656-G	0.12923	1E-10		0.2363	[0.16-0.31] unit decrease	Illumina [18236139] (imputed)	N
1209	chr16	81916911	81916912	rs11548656	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16q23.3	PLCG2	rs11548656-?		8E-8				Illumina [9578670] (imputed)	N
1209	chr16	81916911	81916912	rs11548656	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16q23.3	PLCG2	rs11548656-A	0.961	5E-11		1.27	1.20-1.34	Illumina [9725440] (imputed)	N
1210	chr16	81927209	81927210	rs139002906	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q23.3	PLCG2	rs139002906-T	0.0045	3E-6		0.6028	[0.35-0.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1210	chr16	81942027	81942028	rs72824905	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	16q23.3	PLCG2	rs72824905-?	NR	5E-10		1.4756235	[1.25-1.67]	Illumina [241551]	N
1210	chr16	81958297	81958298	rs7192724	24080446	Rudolph A	2013-11-04	Endocr Relat Cancer	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Breast cancer (menopausal hormone therapy interaction)	2,920 European ancestry cases	7,689 European ancestry cases, 9,266 European ancestry controls	16q23.3	PLCG2	rs7192724-?		3E-6		1.24	[1.13-1.36]	Illumina [2500000] (imputed)	N
1210	chr16	81960957	81960958	rs3813009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q23.3	NR	rs3813009-C	0.223729928793947	4E-7	(IGP8)	0.2122	[0.13-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1210	chr16	81960957	81960958	rs3813009	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q23.3	NR	rs3813009-C	0.223729928793947	4E-6	(IGP48)	0.1929	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1210	chr16	81971402	81971403	rs1071644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q23.3	PLCG2	rs1071644-C	0.524057	1E-15		0.018133298	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1210	chr16	82033809	82033810	rs11542462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	16q23.3	NR	rs11542462-A	NR	1E-14		0.0277	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1210	chr16	82033809	82033810	rs11542462	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	16q23.3		rs11542462-?	NR	10E-17		0.0247803	[0.019-0.031] unit decrease	NR [6912294] (imputed)	N
1210	chr16	82033809	82033810	rs11542462	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	16q23.3		rs11542462-G	0.865656	9E-16		0.023	[0.017-0.029] unit decrease	NR [7250403] (imputed)	N
1211	chr16	82072853	82072853	rs56169712	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q23.3	NR	rs56169712-TAC	0.5726	7E-6	(EA)	0.0319	[0.018-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
1211	chr16	82086032	82086033	rs72829163	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.3		rs72829163-T	NR	1E-6		4.8720217	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1211	chr16	82086032	82086033	rs72829163	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	16q23.3		rs72829163-T	NR	5E-6		4.5617514	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1211	chr16	82126915	82126916	rs2966248	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	16q23.3	HSD17B2	rs2966248-C	0.62	3E-6		0.21	[0.11-0.31] unit increase	Illumina [7597379] (imputed)	N
1211	chr16	82131687	82131688	rs79488654	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q23.3	NR	rs79488654-G	0.998629	8E-9		0.235323	[0.15-0.32] unit increase	Affymetrix [16577313] (imputed)	N
1211	chr16	82153537	82153538	rs34638657	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	16q23.3	HSD17B2, MPHOSPH6	rs34638657-C	0.225187101	6E-6		1.0949496	[1.052655583-1.138943009]	Illumina [10439017] (imputed)	N
1211	chr16	82166180	82166181	rs8052913	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	16q23.3	NR	rs8052913-C	NR	4E-10		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1211	chr16	82167192	82167193	rs6564982	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	16q23.3	MPHOSPH6	rs6564982-C	0.215845	2E-9				Affymetrix, Illumina [NR] (imputed)	N
1211	chr16	82177169	82177170	rs373491984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	16q23.3		rs373491984-G	NR	2E-8		0.0989	[0.064-0.134] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1211	chr16	82178893	82178894	rs201158093	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	16q23.3	RP11-510J16.5	rs201158093-TAA	NR	6E-7		1.11	[NR]	Illumina [20370935] (imputed)	N
1211	chr16	82178893	82178894	rs201158093	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	16q23.3	RP11-510J16.5	rs201158093-TAA	0.44	9E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1212	chr16	82185111	82185112	rs2303267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSD17B2	rs2303267-?	NR	6E-6	(TAG 48:2)	0.41519293	[0.24-0.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1212	chr16	82185111	82185112	rs2303267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSD17B2	rs2303267-?	NR	5E-6	(TAG 48:3)	0.41991296	[0.24-0.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1212	chr16	82185111	82185112	rs2303267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSD17B2	rs2303267-?	NR	1E-6	(TAG 48:4)	0.44898182	[0.27-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
1212	chr16	82199979	82199980	rs7194734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q23.3		rs7194734-T	NR	2E-23		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1212	chr16	82199979	82199980	rs7194734	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	16q23.3	MPHOSPH6	rs7194734-T	0.78	7E-10		0.037	[0.025-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1212	chr16	82202136	82202137	rs11645045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.3		rs11645045-?	NR	5E-29				NR [~ 8900000] (imputed)	N
1212	chr16	82209860	82209861	rs2967374	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	16q23.3	MPHOSPH6	rs2967374-G	NR	7E-6	(East Asian)	0.056	NR unit decrease	Illumina [6407959] (imputed)	N
1212	chr16	82209860	82209861	rs2967374	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	16q23.3	MPHOSPH6	rs2967374-G	NR	1E-11		0.049	NR unit decrease	Illumina [6407959] (imputed)	N
1212	chr16	82217152	82217153	rs2967383	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q23.3	RN7SKP190	rs2967383-G	0.266477	2E-9		1.0649	NR	Affymetrix, Illumina [NR] (imputed)	N
1212	chr16	82266590	82266591	rs2317828	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	16q23.3	PLCG2, CDH13	rs2317828-?		2E-6		3.72	[2.3-5.14] unit increase	Illumina [~ 4900000] (imputed)	N
1212	chr16	82279625	82279626	rs13330839	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor dominant vs postural instability/gait difficulty)	1,570 European ancestry tremor dominant cases, 1,259 European ancestry postural instability/gait difficulty cases	NA	16q23.3	MPHOSPH6	rs13330839-A	0.87	7E-6		0.47	[0.27-0.67] unit decrease	Illumina [12910578] (imputed)	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	9E-7	(Total energy expenditure )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	9E-6	(BMI )	0.02	[NR] kg/m2 increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	5E-6	(Sleep energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	4E-7	(Weight )	0.03	[NR] kg increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	3E-6	(BMI z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	1E-7	(Hip circumference )	0.04	[NR] cm increase	Illumina [899892]	N
1213	chr16	82326804	82326805	rs11863065	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q23.3	MPHOSPH6	rs11863065-A	0.03	1E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
1213	chr16	82363232	82363233	rs7190761	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	16q23.3	MPHOSPH6, CDH13	rs7190761-A		6E-6		0.307	[0.17-0.44] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1213	chr16	82376002	82376003	rs58543609	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	16q23.3		rs58543609-C	0.03	5E-8		0.132	[0.085-0.179] unit increase	Illumina [6361597] (imputed)	N
1213	chr16	82377780	82377781	rs4087296	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	16q23.3	intergenic	rs4087296-?	NR	3E-7	(TRBMDf)			Affymetrix [70897]	N
1213	chr16	82379952	82379953	rs4082514	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	16q23.3	AC009117.8	rs4082514-?	0.02741	3E-6	(PC1)			Illumina [475971]	N
1213	chr16	82410215	82410216	rs56053540	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	16q23.3	NR	rs56053540-G	0.1115	5E-6		0.2166	[0.12-0.31] unit decrease	Illumina [10677593] (imputed)	N
1213	chr16	82438336	82438337	rs12922346	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q23.3	NA	rs12922346-C	0.2641	1E-11		0.0133	[0.0094-0.0172] unit increase	NR [~ 27400000] (imputed)	N
1214	chr16	82448194	82448195	rs11150461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q23.3		rs11150461-G	NR	1E-11		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1214	chr16	82448194	82448195	rs11150461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q23.3		rs11150461-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1214	chr16	82451678	82451679	rs11150462	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q23.3	CDH13	rs11150462-T	0.367968	3E-9		0.00844366	[0.0057-0.0112] unit increase	Affymetrix [12370749]	N
1214	chr16	82453385	82453386	rs34691181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.3	NR	rs34691181-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1214	chr16	82457732	82457733	rs7187223	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NA	16q23.3	intergenic	rs7187223-A	0.96	1E-7		0.251	[0.16-0.34] unit increase	Illumina [~ 2400000] (imputed)	N
1214	chr16	82477313	82477314	rs1364247	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	16q23.3	CDH13	rs1364247-C	NR	4E-6	(daytime napping duration, weekdays)	0.08301	[0.048-0.118] unit decrease	Affymetrix [7141204] (imputed)	N
1214	chr16	82478623	82478624	rs12716944	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	16q23.3	intergenic	rs12716944-?	NR	4E-6		1.339053	[1.182973-1.515725]	Illumina [at least 4756722] (imputed)	N
1214	chr16	82478623	82478624	rs12716944	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	16q23.3	intergenic	rs12716944-?	NR	6E-6		1.290455	[1.156036-1.440503]	Illumina [at least 4756722] (imputed)	N
1214	chr16	82485250	82485251	rs8053728	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	16q23.3	CDH13	rs8053728-?	NR	6E-6	(Baseline)	0.18	[0.10-0.26] ng/dL decrease	Affymetrix [2543887] (imputed)	N
1214	chr16	82519227	82519228	rs1991867	24736177	Sprooten E	2014-04-13	Neuroimage	Common genetic variants and gene expression associated with white matter microstructure in the human brain.	White matter microstructure (global fractional anisotropy)	727 Mexican American individuals from 65 families, 49 Mexican American individuals	NA	16q23.3	intergenic	rs1991867-?		2E-9				Illumina [929187]	N
1214	chr16	82519227	82519228	rs1991867	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	16q23.3	CDH13	rs1991867-C	0.111	4E-6		0.044	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
1214	chr16	82521686	82521687	rs12598984	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	16q23.3		rs12598984-?	NR	6E-6				Illumina [1365315]	N
1214	chr16	82523124	82523125	rs187996666	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.3	NR	rs187996666-?	NR	1E-9				Illumina [7760689] (imputed)	N
1215	chr16	82581609	82581610	rs80101936	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.3	NR	rs80101936-?	NR	2E-8				Illumina [7760689] (imputed)	N
1215	chr16	82594382	82594383	rs4783227	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	16q23.3	intergenic	rs4783227-?	0.424	4E-7	(olanzapine-total cholesterol)			Affymetrix [492900]	N
1215	chr16	82620538	82620539	rs10514545	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q23.3		rs10514545-G	0.568	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1215	chr16	82628493	82628494	rs892244	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	16q23.3	NR	rs892244-?		2E-8	(genus_Bifidobacterium)	0.7704012	[0.51-1.03] unit decrease	Affymetrix [211319]	N
1215	chr16	82638217	82638218	rs41389746	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	16q23.3	NR	rs41389746-?	NR	2E-6				Illumina [7500450] (imputed)	N
1215	chr16	82642650	82642651	rs11646213	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	16q23.3	CDH13	rs11646213-T	0.561183962533546	3E-11		0.041783907	unit increase	Illumina [265780]	N
1215	chr16	82642650	82642651	rs11646213	19304780	Org E	2009-03-20	Hum Mol Genet	Genome-wide scan identifies CDH13 as a novel susceptibility locus contributing to blood pressure determination in two European populations.	Hypertension	364 European ancestry cases, 590 European ancestry controls	1,043 European ancestry cases, 1,769 European ancestry controls	16q23.3	CDH13	rs11646213-T	0.60	8E-6		1.28	[1.15-1.43]	Affymetrix [395912]	N
1215	chr16	82643489	82643490	rs111702115	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16q23.3	CDH13	rs111702115-C	NR	2E-6	(sleep efficiency)	2.553	[1.5-3.6] unit decrease	Affymetrix [7141204] (imputed)	N
1215	chr16	82646332	82646333	rs3844412	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	16q23.3	CDH13	rs3844412-A	0.11	4E-7	(Dominant)	5.22	[2.67-10.2]	Illumina [555600]	N
1215	chr16	82648513	82648514	rs11647188	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	16q23.3	CDH13	rs11647188-?	NR	9E-9		0.011853027	[0.0078-0.0159] unit increase	NR [7306098]	N
1215	chr16	82648513	82648514	rs11647188	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q23.3		rs11647188-A	0.6066	5E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1215	chr16	82650716	82650717	rs3865188	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.3	NR	rs3865188-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1215	chr16	82650716	82650717	rs3865188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q23.3		rs3865188-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1215	chr16	82650716	82650717	rs3865188	20887962	Jee SH	2010-10-08	Am J Hum Genet	Adiponectin concentrations: a genome-wide association study.	Adiponectin levels	4,001 Korean ancestry individuals	2,304 Korean ancestry individuals	16q23.3	CDH13	rs3865188-?	0.30	3E-83		0.09	[NR] ug/ml decrease	Affymetrix [up to 354357]	N
1215	chr16	82650716	82650717	rs3865188	20876611	Wu Y	2010-09-27	Hum Mol Genet	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry female individuals	1,774 Filipino ancestry offspring	16q23.3	CDH13	rs3865188-T	0.47	4E-30		0.11	[0.09-0.13] unit decrease	Affymetrix [2073674] (imputed)	N
1215	chr16	82658089	82658090	rs8062260	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	16q23.3	NR	rs8062260-A	NR	4E-6		0.01254	[0.0072-0.0179] unit increase	Illumina [541493]	N
1215	chr16	82662267	82662268	rs4783244	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	16q23.3	CDH13	rs4783244-T	0.360	7E-165		0.33	[0.31-0.35] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1215	chr16	82662267	82662268	rs4783244	21771975	Chung CM	2011-07-19	Diabetes	A genome-wide association study reveals a quantitative trait locus of adiponectin on CDH13 that predicts cardiometabolic outcomes.	Adiponectin levels	382 Han Chinese ancestry young-onset-hypertensive cases	559 Han Chinese ancestry young-onset-hypertensive cases	16q23.3	CDH13	rs4783244-T	0.30	6E-17	(Second stage)	0.346	[0.24-0.46] ug/mL increase	Illumina [509174]	N
1215	chr16	82663287	82663288	rs12051272	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	16q23.3		rs12051272-T	0.02	2E-68		0.43	[0.38-0.48] unit decrease	Illumina [16607452] (imputed)	N
1215	chr16	82663287	82663288	rs12051272	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	16q23.3	CDH13	rs12051272-T	0.03	1E-14		0.26	[0.20-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1215	chr16	82663287	82663288	rs12051272	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	16q23.3	CDH13, CMIP	rs12051272-T	NR	6E-48		0.26	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1215	chr16	82663287	82663288	rs12051272	22065538	Morisaki H	2011-11-07	Hum Mutat	CDH13 gene coding T-cadherin influences variations in plasma adiponectin levels in the Japanese population.	Adiponectin levels	3,310 Japanese ancestry individuals	NA	16q23.3	CDH13	rs12051272-?	NR	5E-40				Illumina [348622]	N
1215	chr16	82664832	82664833	rs139419280	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	16q23.3	NR	rs139419280-G	0.998	8E-6		1.985	[1.11-2.86] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1215	chr16	82672164	82672165	rs4782722	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	16q23.3		rs4782722-T	0.4	7E-15		0.119	[0.09-0.148] unit increase	Illumina [16607452] (imputed)	N
1215	chr16	82672326	82672327	rs12922394	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	16q23.3	NR	rs12922394-?		6E-7	(CXCL10)	0.3937	[NR] unit decrease	Illumina [NR]	N
1215	chr16	82692811	82692812	rs8057927	23358160	Borglum AD	2013-01-29	Mol Psychiatry	Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.	Schizophrenia	888 European ancestry cases, 882 European ancestry controls	2539 European ancestry cases, 5486 European ancestry controls	16q23.3	CDH13	rs8057927-C	0.069	1E-6		1.342		Illumina [541148]	N
1215	chr16	82694221	82694222	rs80124906	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16q23.3	NR	rs80124906-A	0.0083	5E-11		0.6211	[0.44-0.81] unit increase	Illumina [~ 10600000] (imputed)	N
1215	chr16	82697660	82697661	rs12446301	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	16q23.3	NR	rs12446301-T	0.1567	2E-7	(Trans/trans-18:2, EA)	0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1215	chr16	82703844	82703845	rs10514550	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	16q23.3	NR	rs10514550-T	0.8577	7E-7	(Trans/trans-18:2, EA)	0.0018	[0.001-0.0026] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1215	chr16	82704527	82704528	rs9934935	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	16q23.3	NR	rs9934935-A	0.1645	3E-7	(Trans/trans-18:2, EA)	0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1216	chr16	82710817	82710818	rs16958145	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	16q23.3	NR	rs16958145-T	0.1086	3E-6	(Trans/trans-18:2, EA)	0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1216	chr16	82710855	82710856	rs16958148	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	16q23.3	NR	rs16958148-T	0.8375	8E-8	(Trans/trans-18:2, EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1216	chr16	82718710	82718711	rs12599112	27911795	Schumann G	2016-11-28	Proc Natl Acad Sci U S A	KLB is associated with alcohol drinking, and its gene product ?-Klotho is necessary for FGF21 regulation of alcohol preference.	Alcohol consumption (heavy vs. light/non-drinkers)	up to 74,711 European ancestry heavy and light/non-drinker individuals	up to 31,021 European ancestry heavy and light/non-drinker individuals	16q23.3	CDH13	rs12599112-A	NR	5E-8		0.0733	[0.048-0.099] unit decrease (initial cohort)	Affymetrix, Illumina, Perlegen [at least 316407] (imputed)	N
1216	chr16	82746936	82746937	rs11646411	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	16q23.3	CDH13	rs11646411-?	NR	7E-6				Affymetrix [504219]	N
1216	chr16	82748240	82748241	rs139697550	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	16q23.3	CDH13	rs139697550-AC	0.917745	3E-6		0.240786	[0.14-0.34] unit increase	Illumina [6952813] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	9E-9	(224 ms)	0.0560612	[0.036-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	9E-12	(-10 ms)	0.0672489	[0.048-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	9E-10	(240 ms)	0.0591392	[0.039-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	7E-12	(-8 ms)	0.0674087	[0.048-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	6E-9	(-14 ms)	0.0570798	[0.037-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	6E-11	(-12 ms)	0.0643644	[0.045-0.084] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	3E-9	(230 ms)	0.0576436	[0.038-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(228 ms)	0.0548036	[0.035-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(222 ms)	0.0556985	[0.036-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(220 ms)	0.053907	[0.034-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(216 ms)	0.0541368	[0.035-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(214 ms)	0.0541037	[0.035-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-8	(210 ms)	0.0543605	[0.035-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-10	(238 ms)	0.0610099	[0.041-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	2E-10	(236 ms)	0.0608781	[0.041-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	1E-9	(234 ms)	0.0601872	[0.041-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	1E-9	(232 ms)	0.0587354	[0.039-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	1E-8	(226 ms)	0.0549791	[0.035-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	1E-8	(218 ms)	0.0549025	[0.035-0.074] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82750050	82750051	rs6565060	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	16q23.3	CDH13	rs6565060-A	0.913657	1E-8	(212 ms)	0.0557811	[0.036-0.075] unit decrease	Affymetrix [10000000] (imputed)	N
1216	chr16	82754424	82754425	rs12443745	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16q23.3	CDH13	rs12443745-C	0.9091	2E-16		0.9432	[0.72-1.17] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1216	chr16	82769497	82769498	rs7194615	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	16q23.3	CDH13	rs7194615-T	0.448502	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
1216	chr16	82787052	82787053	rs8056064	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	16q23.3	NR	rs8056064-?		4E-6	(genus_Bifidobacterium)	0.64188	[0.37-0.91] unit decrease	Affymetrix [211319]	N
1216	chr16	82787052	82787053	rs8056064	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q23.3	NR	rs8056064-G	0.15	2E-6	(t11;14 vs. controls)	1.68	[1.36-2.08]	Illumina [414804] (imputed)	N
1216	chr16	82795418	82795419	rs77347308	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	CDH13	rs77347308-A	0.99	5E-7	(BDRBASE, AA)	17.14	[10.5-23.78] unit decrease	Illumina [NR] (imputed)	N
1216	chr16	82799443	82799444	rs192290664	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		16q23.3	CDH13	rs192290664-A	0.978	4E-6		0.046	[0.026-0.066] dioptres decrease	NR [5900115] (imputed)	N
1216	chr16	82817590	82817591	rs12386026	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	16q23.3	NR	rs12386026-?	0.04	2E-6		1.66	[1.30-2.00]	Affymetrix [> 333754] (imputed)	N
1217	chr16	82848207	82848208	rs12598815	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q23.3	NR	rs12598815-?	NR	1E-7	(AA)	1.2435	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1217	chr16	82861813	82861814	rs10492859	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	16q23.3	CDH13	rs10492859-A	0.758	5E-6		1.06269	[1.04-1.09]	NR [9372253] (imputed)	N
1217	chr16	82862021	82862022	rs60173313	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	16q23.3		rs60173313-G	0.109377589	2E-6		0.019706532	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1217	chr16	82865578	82865579	rs80341283	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	16q23.3		rs80341283-A	NR	1E-6		2.7457	[1.66-3.83] unit increase	Illumina [NR] (imputed)	N
1217	chr16	82867455	82867456	rs10492862	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	16q23.3	CDH13	rs10492862-A	0.308	1E-9		1.11	[1.08-1.15]	Illumina [9560910] (imputed)	N
1217	chr16	82872627	82872628	rs7206608	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		16q23.3	CDH13	rs7206608-C	0.678317	3E-11		0.00978895	[0.0069-0.0127] unit decrease	Affymetrix [12370749]	N
1217	chr16	82872627	82872628	rs7206608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q23.3	NR	rs7206608-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1217	chr16	82872627	82872628	rs7206608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q23.3		rs7206608-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1217	chr16	82872627	82872628	rs7206608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q23.3	NA	rs7206608-C	0.6754	2E-11		0.0127	[0.009-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
1217	chr16	82872627	82872628	rs7206608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	16q23.3	NA	rs7206608-C	0.6751	1E-12		0.013	[0.0095-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1217	chr16	82878154	82878155	rs62035176	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	16q23.3	CDH13	rs62035176-A	0.358882	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
1217	chr16	82888934	82888935	rs286679	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	16q23.3		rs286679-G	0.04	2E-6		1.18	unit increase	Affymetrix [NR] (imputed)	N
1217	chr16	82894816	82894817	rs2194285	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	16q23.3	CDH13	rs2194285-G	0.11	9E-9		1.19	[1.12-1.27]	Illumina [9332516] (imputed)	N
1217	chr16	82906541	82906542	rs4513093	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	16q23.3	CDH13	rs4513093-?		2E-15		1.2345679	[1.18-0.01]	Affymetrix, Illumina [3493832] (imputed)	N
1217	chr16	82924684	82924685	rs12933472	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	16q23.3	CDH13	rs12933472-?		8E-6	(SG)	0.12	[0.061-0.179] unit decrease	Illumina [693128]	N
1217	chr16	82962762	82962763	rs17675602	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	16q23.3	intergenic	rs17675602-T	0.13	5E-6		1.21	[1.12-1.32]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1218	chr16	82986980	82986981	rs72790163	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	16q23.3	CDH13	rs72790163-A	0.844	2E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1218	chr16	82994152	82994153	rs16958960	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC125793.1	rs16958960-?	NR	2E-10		1.08744	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1218	chr16	82994867	82994868	rs140186760	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	16q23.3	CDH13	rs140186760-?	NR	1E-7				Affymetrix, Illumina [at least 807411] (imputed)	N
1218	chr16	82995773	82995774	rs12324975	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	16q23.3	CDH13, LOC101928417	rs12324975-T	0.178	6E-6		0.67	[0.56-0.80]	Affymetrix [7435577] (imputed)	N
1218	chr16	82995816	82995817	rs72790173	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDH13	rs72790173-?	NR	2E-10		1.08743	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1218	chr16	82995816	82995817	rs72790173	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDH13	rs72790173-?	NR	1E-9	(male)	1.65737	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1218	chr16	83033037	83033038	rs72794140	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	16q23.3		rs72794140-A	0.92	4E-6		0.16	[0.082-0.238] unit increase	Illumina [5305352] (imputed)	N
1218	chr16	83034176	83034177	rs112016995	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q23.3	NR	rs112016995-?	NR	5E-8				Illumina [7760689] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	16q23.3		rs7500448-A	0.751011	1E-8		0.0474458	[0.031-0.064] decrease	Affymetrix [NR]	N
1218	chr16	83045789	83045790	rs7500448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	16q23.3		rs7500448-G	NR	3E-9		0.0566	[0.038-0.075] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q23.3		rs7500448-G	NR	7E-37		0.0263	[0.022-0.03] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	16q23.3		rs7500448-G	NR	7E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	16q23.3		rs7500448-G	NR	4E-9		0.0534	[0.036-0.071] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	16q23.3	CDH13	rs7500448-A	0.763949	5E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16q23.3	CDH13	rs7500448-?	NR	2E-18		0.0504851	[0.039-0.062] unit decrease	Illumina [4804024] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q23.3		rs7500448-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q23.3	CDH13	rs7500448-G	0.7611	6E-25		0.3198	[0.26-0.38] mmHg increase	Affymetrix [NR] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q23.3	CDH13	rs7500448-G	0.6143	2E-12		0.2134	[0.15-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	16q23.3	CDH13	rs7500448-G	0.254	8E-10				Affymetrix [28000000] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	16q23.3	CDH13	rs7500448-A	0.7594	2E-16		0.0557	[0.042-0.069] unit increase	Affymetrix [at least 7947838] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	16q23.3	CDH13	rs7500448-A	0.7613	2E-16		0.0633	[0.048-0.078] unit increase	NR [8041861] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q23.3	CDH13	rs7500448-A	0.761	2E-16		0.063	[0.047-0.079] unit increase	Affymetrix [7947838] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	16q23.3	CDH13	rs7500448-G	0.254	3E-7	(EA, initial)	0.279	[0.17-0.39] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	16q23.3	CDH13	rs7500448-G	0.254	3E-10		0.238	[0.16-0.31] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	16q23.3	CDH13	rs7500448-A	0.772	5E-10		1.063	[1.043-1.083]	Affymetrix [9149595] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	16q23.3	CDH13	rs7500448-A	0.75	1E-8		1.06	[1.04-1.09]	Affymetrix [9061845] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	16q23.3	CDH13	rs7500448-A	0.75	1E-19		0.329	[0.25-0.41] unit increase	Affymetrix [~ 9800000] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16q23.3	CDH13	rs7500448-A		6E-9		0.243	unit increase	Affymetrix [at least 2696785] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16q23.3	CDH13	rs7500448-A		1E-6	(EA)	0.224	unit increase	Affymetrix [at least 2696785] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.3	CDH13	rs7500448-A		3E-24		0.301	unit increase	Affymetrix [at least 2696785] (imputed)	N
1218	chr16	83045789	83045790	rs7500448	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q23.3	CDH13	rs7500448-A		7E-7		0.135	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1218	chr16	83055699	83055700	rs72794179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q23.3		rs72794179-C	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1218	chr16	83055699	83055700	rs72794179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	16q23.3		rs72794179-C	0.237476	4E-8		0.0218318	[0.014-0.03] unit decrease	Illumina [13477769] (imputed)	N
1218	chr16	83084130	83084131	rs4378601	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.3	NR	rs4378601-?	NR	3E-8				Affymetrix [NR]	N
1218	chr16	83092001	83092002	rs76652947	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	16q23.3	NR	rs76652947-?		4E-6				Illumina [up to 6969139] (imputed)	N
1218	chr16	83092001	83092002	rs76652947	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	16q23.3	CDH13	rs76652947-C	0.786815714	7E-7		0.186849	[0.11-0.26] unit increase	Illumina [6952813] (imputed)	N
1219	chr16	83129283	83129284	rs62035110	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	16q23.3	NA	rs62035110-G		1E-8		0.0178829	[0.012-0.024] unit increase	Illumina [13288253] (imputed)	N
1219	chr16	83143452	83143453	rs9922134	25729143	Ahmetov I	2014-10-21	Biol Sport	Genome-wide association study identifies three novel genetic markers associated with elite endurance performance.	Maximal oxygen uptake response	15 Russian ancestry male long endurance athletes, 17 Russian ancestry female long endurance athletes, 31 Russian ancestry middle and short endurance athletes, 17 Russian ancestry middle and short endurance athletes	NA	16q23.3	CDH13	rs9922134-C	NR	9E-6	(MMSE, FMSE)			Illumina [1140419]	N
1219	chr16	83144849	83144850	rs7196583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q23.3	Intergenic	rs7196583-T	0.3759	9E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr16	83148685	83148686	rs4075464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q23.3	Intergenic	rs4075464-A	0.3699	1E-8		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1219	chr16	83149752	83149753	rs4077666	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q23.3	Intergenic	rs4077666-C	0.8151	5E-10	(MTAG)	0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1219	chr16	83212397	83212398	rs8055236	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	16q23.3	intergenic	rs8055236-G	0.80	6E-6		1.91	[1.33-2.74]	Affymetrix [469557]	N
1220	chr16	83233912	83233913	rs16959745	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q23.3	NR	rs16959745-G	0.01742	2E-9	(CPQ)	0.02311	NR unit increase	Illumina [1671387] (imputed)	N
1220	chr16	83284337	83284338	rs10514585	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	16q23.3	CDH13	rs10514585-A	0.31	5E-6		0.15	[NR] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1220	chr16	83304229	83304230	rs16960052	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	16q23.3		rs16960052-C	NR	2E-10	(general)			Illumina [5894709] (imputed)	N
1220	chr16	83308000	83308001	rs17679617	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	16q23.3	Intergenic	rs17679617-?		3E-6		1.609	[NR]	Affymetrix [492217] (imputed)	N
1220	chr16	83308000	83308001	rs17679617	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	16q23.3	Intergenic	rs17679617-?		7E-6		1.443	[NR]	Affymetrix [492217] (imputed)	N
1220	chr16	83315378	83315379	rs117294751	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	16q23.3	NR	rs117294751-?	NR	3E-6		0.0080083	[0.0047-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1220	chr16	83326058	83326059	rs11644424	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	16q23.3	CDH13	rs11644424-T	0.44	8E-6	(Dominant)	3.32	[1.71-6.44]	Illumina [555600]	N
1220	chr16	83358775	83358776	rs6563898	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.f. specific)	404 Korean ancestry D.f.-positive cases, 473 Korean ancestry D.f.-negative cases	NA	16q23.3	CDH13	rs6563898-G	0.523	8E-6		1.82	[1.39-2.38]	Illumina [442089]	N
1220	chr16	83360774	83360775	rs9940464	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	16q23.3	NR	rs9940464-T	NR	5E-7		1.17	[1.10-1.25]	Illumina [1300000] (imputed)	N
1221	chr16	83383767	83383768	rs1364301	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	16q23.3	CDH13	rs1364301-?	NR	1E-7		4.6	[2.4-8.6]	Illumina [1057565]	N
1221	chr16	83386771	83386772	rs11864066	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16q23.3	Intergenic	rs11864066-G	0.5598	6E-10		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1221	chr16	83386796	83386797	rs9933476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q23.3	Intergenic	rs9933476-A	0.4964	1E-12	(MTAG)	0.0127	[0.0092-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr16	83386796	83386797	rs9933476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q23.3	Intergenic	rs9933476-G	0.5036	2E-10		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1221	chr16	83387727	83387728	rs918765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.3	Intergenic	rs918765-C	0.7153	6E-11	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr16	83387727	83387728	rs918765	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q23.3	Intergenic	rs918765-C	0.7166	3E-8	(MTAG)	0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr16	83391137	83391138	rs8056960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q23.3	Intergenic	rs8056960-C	0.5518	6E-14	(MTAG)	0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1221	chr16	83409487	83409488	rs192938145	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	16q23.3	NR	rs192938145-?	NR	8E-6		1.2784	[0.59-1.97] unit increase	Illumina [at least 560000] (imputed)	N
1221	chr16	83414060	83414061	rs78600318	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q23.3		rs78600318-A	0.857	5E-10		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1221	chr16	83429901	83429902	rs7199636	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	16q23.3		rs7199636-C	NR	1E-6		1.215	[0.74-1.69] unit decrease	Illumina [NR] (imputed)	N
1221	chr16	83447270	83447271	rs74249525	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	16q23.3	CDH13, MIR3182	rs74249525-T	NR	6E-6	(sleep onset, weekdays)	0.5058	[0.29-0.73] unit increase	Affymetrix [7141204] (imputed)	N
1221	chr16	83451960	83451961	rs9674268	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q23.3	CDH13	rs9674268-?		3E-6				Illumina [4322238] (imputed)	N
1221	chr16	83464835	83464836	rs62040089	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		CDH13	rs62040089-?	NR	9E-6		0.63	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1221	chr16	83467343	83467344	rs181710595	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q23.3	CDH13	rs181710595-G	0.999	1E-6	(AA)	0.433	unit increase	Illumina [NR] (imputed)	N
1221	chr16	83473112	83473113	rs11861812	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	16q23.3	CDH13	rs11861812-?	NR	1E-6		0.0135	[0.008-0.019] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1221	chr16	83480962	83480963	rs113521156	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Methanobacterium B abundance in stool	5,959 Finnish ancestry individuals	NA	16q23.3		rs113521156-T	0.298804	2E-8		0.0388202	[0.025-0.052] unit decrease	Illumina [7980478] (imputed)	N
1221	chr16	83487470	83487471	rs17216786	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	16q23.3	CDH13	rs17216786-?	0.054	1E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
1222	chr16	83555019	83555020	rs77894924	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q23.3	Intergenic	rs77894924-A	NR	2E-7	(between families)	5.208	unit increase	Affymetrix [up to 15107142] (imputed)	N
1222	chr16	83555524	83555525	rs4074373	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	16q23.3	CDH13	rs4074373-G	0.158	7E-6	(n-6 PUFA)			Affymetrix [590000]	N
1222	chr16	83605264	83605265	rs11649622	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	16q23.3	CDH13	rs11649622-A	0.17	6E-6		0.0876	[0.05-0.125] unit increase	Illumina [6380737] (imputed)	N
1222	chr16	83606067	83606068	rs12919509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q23.3		rs12919509-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1222	chr16	83608598	83608599	rs61527214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q23.3	Intergenic	rs61527214-A	0.4111	4E-13	(MTAG)	0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1222	chr16	83608598	83608599	rs61527214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q23.3		rs61527214-A	0.4113	1E-14		0.011	[0.0083-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1222	chr16	83608598	83608599	rs61527214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q23.3	Intergenic	rs61527214-A	0.4113	7E-17	(MTAG)	0.0111	[0.0086-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1222	chr16	83608598	83608599	rs61527214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q23.3	Intergenic	rs61527214-A	0.4044	5E-12	(MTAG)	0.0161	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1222	chr16	83614471	83614472	rs4477688	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSBP1	rs4477688-?	NR	2E-6	(guanosine monophosphate)	0.21174745	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1222	chr16	83617577	83617578	rs11149581	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q23.3	Intergenic	rs11149581-T	0.6795	2E-8	(MTAG)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1222	chr16	83617577	83617578	rs11149581	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q23.3	Intergenic	rs11149581-T	0.6795	1E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1223	chr16	83625562	83625563	rs8060632	28317148	Campo C	2017-01-01	Hematol Oncol	Bortezomib-induced peripheral neuropathy: A genome-wide association study on multiple myeloma patients.	Bortezomib-induced peripheral neuropathy in multiple myeloma	102 European ancestry cases and 544 European ancestry controls.	NR	16q23.3	CDH13	rs8060632-A	NR	2E-6		2.31	[1.61-3.32]	Illumina [NR] (imputed)	N
1223	chr16	83632819	83632820	rs147631684	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	16q23.3	CDH13	rs147631684-A	0.03	5E-6				NR [346946]	N
1223	chr16	83639334	83639335	rs6563943	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	16q23.3	CDH13	rs6563943-A	0.32	6E-6		0.05	[0.03-0.07] cm increase	Illumina [420885]	N
1223	chr16	83651166	83651167	rs8056966	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSBP1	rs8056966-?	NR	7E-8	(CE 20:5)	0.20063421	[0.13-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1223	chr16	83651166	83651167	rs8056966	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q23.3	HSBP1	rs8056966-?	NR	2E-6	(CE 20:4)	0.17753717	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1223	chr16	83652901	83652902	rs9939760	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	16q23.3	NR	rs9939760-?		9E-6	(females)			Illumina [1211988] (imputed)	N
1223	chr16	83658142	83658143	rs7193703	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	16q23.3	CDH13	rs7193703-?	NR	8E-8		20.408165	[3.97-100.00]	Illumina [13676411] (imputed)	N
1223	chr16	83659009	83659010	rs6563954	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	16q23.3	CDH13	rs6563954-G	0.08	4E-6	(female)	2.24	[1.3-3.18] unit decrease	Illumina [6380737] (imputed)	N
1223	chr16	83664335	83664336	rs722940	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.3	NR	rs722940-?	NR	5E-6				Affymetrix [NR]	N
1223	chr16	83683944	83683945	rs11859365	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	16q23.3	CDH13	rs11859365-?	NR	2E-19		0.00703383	[0.0015-0.0125] unit decrease	Affymetrix [25921788] (imputed)	N
1223	chr16	83683944	83683945	rs11859365	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	16q23.3	CDH13	rs11859365-?	NR	2E-19		0.025221	[0.02-0.031] unit decrease	Affymetrix [25921788] (imputed)	N
1223	chr16	83683944	83683945	rs11859365	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	16q23.3	CDH13	rs11859365-?	NR	7E-12		0.0190706	[0.014-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
1223	chr16	83712434	83712435	rs3784943	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	16q23.3	CDH13	rs3784943-?	NR	5E-8	(SF1)			Affymetrix [5476100] (imputed)	N
1223	chr16	83715275	83715276	rs72797219	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	16q23.3	NR	rs72797219-G	NR	2E-6		0.114	[0.067-0.161] unit increase	Illumina [6319684] (imputed)	N
1223	chr16	83740106	83740107	rs1364121	28120872	Li X	2017-01-25	Sci Rep	Genome-wide association study identifies four SNPs associated with response to platinum-based neoadjuvant chemotherapy for cervical cancer.	Response to platinum-based neoadjuvant chemotherapy in cervical cancer	66 Han Chinese ancestry non-responder cases, 160 Han Chinese ancestry responder cases	79 Han Chinese ancestry non-responder cases, 291 Han Chinese ancestry responder cases	16q23.3	MIR3182, HSBP1, MLYCO, OSGIN1, NECAB2, SLC38A8, RNA5SP432, MBTPS1, HSDL1, CDH13, DNAAF1, TAF1C, ADAD2	rs1364121-A	0.25	3E-6		1.98	[1.49-2.64]	Affymetrix [657178]	N
1223	chr16	83740125	83740126	rs1364120	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Diastolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	16q23.3	CDH13	rs1364120-G	0.3247	6E-6		0.77	[0.44-1.1] unit decrease	Affymetrix [NR] (imputed)	N
1224	chr16	83757327	83757328	rs3784962	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	16q23.3	AC009063.8	rs3784962-?	NR	6E-6	(PC1)			Illumina [up to 563855]	N
1224	chr16	83757327	83757328	rs3784962	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	16q23.3	AC009063.8	rs3784962-?	NR	3E-6	(TrailsB)			Illumina [up to 563855]	N
1224	chr16	83764203	83764204	rs3096277	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	16q23.3	CDH13	rs3096277-?	NR	1E-9	(SBPLTA)			Affymetrix [70897]	N
1224	chr16	83771495	83771496	rs444881	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q23.3	NR	rs444881-C	0.585534589548906	4E-6	(IGP18)	0.1441	[0.083-0.206] unit decrease	Illumina [~ 2500000] (imputed)	N
1224	chr16	83783827	83783828	rs149740259	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	16q23.3	CDH13	rs149740259-A	0.01	9E-6	(Age 20-60 years)	0.2412	[0.14-0.35] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1224	chr16	83796215	83796216	rs1345850	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q23.3	CDH13	rs1345850-?		2E-6				Illumina [4322238] (imputed)	N
1224	chr16	83817887	83817888	rs114132812	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	CDH13	rs114132812-A	0.98	1E-8	(BDRPRED, AA)	7.63	[5.04-10.22] unit increase	Illumina [NR] (imputed)	N
1224	chr16	83822301	83822302	rs115067260	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	CDH13	rs115067260-A	0.97	5E-9	(BDRABS, AA)	0.17	[0.11-0.23] unit increase	Illumina [NR] (imputed)	N
1224	chr16	83844677	83844678	rs145442019	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	HSBP1	rs145442019-A	0.99	9E-8	(BDRABS, AA)	0.203	[0.13-0.28] unit increase	Illumina [NR] (imputed)	N
1224	chr16	83844677	83844678	rs145442019	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	HSBP1	rs145442019-A	0.99	4E-7	(BDRPRED, AA)	7.1	[4.38-9.82] unit increase	Illumina [NR] (imputed)	N
1224	chr16	83853908	83853909	rs60724844	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	16q23.3		rs60724844-G	NR	5E-6		1.0992	unit increase	Illumina [8524982] (imputed)	N
1225	chr16	83889679	83889680	rs443222	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.3	NR	rs443222-?	NR	8E-16				Affymetrix [NR]	N
1225	chr16	83891786	83891787	rs387092	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q23.3	MLYCD	rs387092-A	0.99	1E-6	(BDRABS, AA)	0.2	[0.12-0.28] unit increase	Illumina [NR] (imputed)	N
1225	chr16	83910505	83910506	rs17783087	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.3	NR	rs17783087-?	NR	3E-7				Affymetrix [NR]	N
1225	chr16	83928381	83928382	rs116228772	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	16q23.3	MLYCD	rs116228772-A	NR	2E-8		0.438	[0.29-0.59] unit increase	NR [11024754] (imputed)	N
1225	chr16	83976563	83976564	rs2011807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q23.3	NR	rs2011807-T	NR	4E-18		0.0252	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1225	chr16	83976563	83976564	rs2011807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.3	NR	rs2011807-T	NR	3E-13		0.0213	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1225	chr16	83976563	83976564	rs2011807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	16q23.3	NR	rs2011807-T	NR	2E-17		0.0248	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1225	chr16	83978401	83978402	rs4782861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q23.3		rs4782861-G	NR	1E-8		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16q23.3	NR	rs67890964-C	0.373584	7E-19		0.0105183	[0.008-0.013] unit increase	Affymetrix [16585854] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16q23.3	NR	rs67890964-C	0.373584	1E-10		0.00894027	[0.0061-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.3	NR	rs67890964-T	NR	1E-8		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.3	NR	rs67890964-T	0.635	1E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.3	NR	rs67890964-T	NR	1E-9		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
1225	chr16	83979316	83979317	rs67890964	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	16q23.3	NR	rs67890964-T	0.635	2E-8	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	16q23.3		rs4782568-G	NR	5E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q23.3		rs4782568-G	NR	7E-28		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q23.3		rs4782568-G	NR	3E-12		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q23.3		rs4782568-G	NR	2E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q23.3		rs4782568-G	NR	2E-9		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	16q23.3		rs4782568-G	NR	6E-26		0.0208	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q23.3	OSGIN1	rs4782568-C	0.54871	1E-36		0.00288625	[0.0024-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	16q23.3	OSGIN1	rs4782568-C	0.548693	5E-30		0.0043768	[0.0036-0.0051] unit increase	Affymetrix [13995440] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q23.3	MLYCD, OSGIN1	rs4782568-C	0.55	1E-24		10.2	z-score increase	Affymetrix [4311822] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	16q23.3	MLYCD, OSGIN1	rs4782568-C	0.55	1E-19		9.06	z-score increase	Affymetrix [4312306] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q23.3	NR	rs4782568-G	NR	3E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q23.3	RP11-505K9.4	rs4782568-G	0.451705	8E-12		0.015607926	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q23.3	RP11-505K9.4	rs4782568-G	0.451704	1E-10		0.014730515	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q23.3	NR	rs4782568-G	0.50227	8E-13				Affymetrix, Illumina [24588908] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q23.3	NR	rs4782568-G	0.448155	1E-14		0.014478	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16q23.3	NR	rs4782568-C	0.548655	1E-24		0.0198789	[0.016-0.024] unit increase	Affymetrix [15000001]	N
1225	chr16	83980528	83980529	rs4782568	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q23.3	RP11-505K9.4	rs4782568-C	0.549101	6E-15		0.0164593	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	16q23.3	RP11-505K9.4	rs4782568-C	0.549163	5E-18		0.0182176	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q23.3	intergenic	rs4782568-?	NR	8E-15		0.0201	[0.016-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	16q23.3	NR	rs4782568-G	0.452164	4E-12		0.00873274	[0.0062-0.0113] unit increase	Affymetrix [16578495] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q23.3	NR	rs4782568-G	0.45174000000000003	8E-17		0.0247859	[0.019-0.031] unit increase	Affymetrix [16577313] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q23.3	NR	rs4782568-G	0.452356	4E-58		0.0132831	[0.012-0.015] unit increase	Affymetrix [16582909] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q23.3	NR	rs4782568-G	0.45154700000000003	7E-49		0.0165289	[0.014-0.019] unit increase	Affymetrix [16582621] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q23.3	NR	rs4782568-G	0.452356	3E-38		0.0120087	[0.01-0.014] unit increase	Affymetrix [16582965] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q23.3	NR	rs4782568-G	0.45154700000000003	5E-36		0.0151683	[0.013-0.018] unit increase	Affymetrix [16582614] (imputed)	N
1225	chr16	83980528	83980529	rs4782568	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q23.3	NR	rs4782568-C	0.547141	9E-13		0.0147299	[0.011-0.019] unit decrease	NR [NR]	N
1225	chr16	83980702	83980703	rs4782862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q23.3		rs4782862-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1225	chr16	83980964	83980965	rs11149612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q23.3		rs11149612-T	NR	2E-12		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1225	chr16	83980964	83980965	rs11149612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	16q23.3		rs11149612-T	NR	4E-14		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1225	chr16	83983754	83983755	rs2245008	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	16q23.3	OSGIN1	rs2245008-G	0.06875	3E-6	(African)			Illumina [4404269] (imputed)	N
1225	chr16	83984775	83984776	rs28555129	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q23.3	OSGIN1	rs28555129-A	0.3147	6E-10		0.0126	[0.0087-0.0165] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1225	chr16	83991571	83991572	rs2741873	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	16q23.3	NR	rs2741873-C	0.7377	3E-6		0.523	[0.25-0.8]	Illumina [10000612] (imputed)	N
1225	chr16	83991579	83991580	rs572633548	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q23.3	NA	rs572633548-C	0.996478	1E-11		0.0131587	[0.0092-0.0171] unit increase	Affymetrix [13995440] (imputed)	N
1225	chr16	83992101	83992102	rs2665301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	16q23.3	NR	rs2665301-A	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1225	chr16	83992894	83992895	rs150635654	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	16q23.3		rs150635654-?	NR	5E-14		0.112793	[0.081-0.145] unit decrease	NR [9800000] (imputed)	N
1225	chr16	83999564	83999565	rs147251034	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	16q23.3		rs147251034-?	NR	6E-14		0.0925371	[0.069-0.116] unit decrease	NR [9800000] (imputed)	N
1225	chr16	83999564	83999565	rs147251034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q23.3	NR	rs147251034-A	NR	5E-10		0.0919	[0.063-0.121] unit decrease	Affymetrix [9000000] (imputed)	N
1226	chr16	84023971	84023972	rs9939114	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	16q23.3	NECAB2	rs9939114-G	0.95	6E-6		1.8518518	[1.43-2.44]	NR [~ 55000000] (imputed)	N
1226	chr16	84030651	84030652	rs2292327	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	16q23.3	NECAB2	rs2292327-G	0.405	1E-9				NR [509413]	N
1226	chr16	84031481	84031482	rs12926503	25378290	McQueen MB	2014-11-07	Behav Genet	The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.	Body mass index (change over time)	917 European ancestry individuals, 677 African American individuals, 209 Hispanic individuals, 73 Asian ancestry individuals, 8 Native American ancestry individuals, 2 individuals	NA	16q23.3	NECAB2	rs12926503-A	0.85	9E-6		1.23	[0.69-1.77] unit increase	Illumina [717411]	N
1226	chr16	84046714	84046715	rs11864146	23213074	Adams LA	2012-12-05	Hepatology	Association between liver-specific gene polymorphisms and their expression levels with nonalcoholic fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	126 European ancestry adolescent cases, 802 European ancestry adolescent controls	NA	16q23.3	SLC38, A8	rs11864146-A	0.100	2E-6		3.14	[0.65-5.63]	Illumina [2078805] (imputed)	N
1226	chr16	84063419	84063420	rs4782578	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	16q23.3		rs4782578-?	NR	2E-6		1.215	[1.121-1.316]	Affymetrix [7975321] (imputed)	N
1226	chr16	84065338	84065339	rs11865522	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	16q23.3		rs11865522-C	0.744996	3E-6		0.0100324	[0.0058-0.0142] unit increase	Illumina [13900000] (imputed)	N
1226	chr16	84075592	84075593	rs145119400	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	16q23.3	SLC38A8	rs145119400-A	0.00543298354104697	8E-15		0.30798888	unit decrease	Illumina [265780]	N
1226	chr16	84077986	84077987	rs12928842	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	16q23.3	SLC38A8	rs12928842-C	NR	6E-10		1.14	[1.098-1.181]	Illumina [6627481] (imputed)	N
1226	chr16	84090897	84090898	rs3785011	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		16q23.3	MBTPS1	rs3785011-A	0.065705	6E-6		0.807782	[0.47-1.15] unit decrease	Illumina [640625] (imputed)	N
1226	chr16	84106134	84106135	rs9937120	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q23.3	NR	rs9937120-G	0.211	8E-8		0.00711382	[0.0045-0.0097] unit increase	NR [9732723] (imputed)	N
1226	chr16	84122596	84122597	rs16962778	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q23.3		rs16962778-?	NR	4E-6		1.15594	[1.08692232553272-1.2293402668985]	Illumina [up to 7827597] (imputed)	N
1226	chr16	84122657	84122658	rs16962779	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q23.3	NR	rs16962779-?	NR	9E-7				Affymetrix [NR]	N
1227	chr16	84158247	84158248	rs4378600	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q24.1	Intergenic	rs4378600-C	0.2958	1E-9	(MTAG)	0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1227	chr16	84158247	84158248	rs4378600	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q24.1	Intergenic	rs4378600-C	0.298	4E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1227	chr16	84168442	84168443	rs117586200	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	16q24.1	HSDL1	rs117586200-C	NR	5E-7		0.4	[0.25-0.55] unit decrease	Illumina [7410776] (imputed)	N
1227	chr16	84200575	84200576	rs57375211	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-269 sp001915995 abundance in stool	5,959 Finnish ancestry individuals	NA	16q24.1		rs57375211-A	0.143386	5E-8		0.109655	[0.07-0.149] unit increase	Illumina [7980478] (imputed)	N
1227	chr16	84204377	84204378	rs181225015	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q24.1	DNAAF1	rs181225015-T	0.999	4E-6	(AA)	0.347	unit increase	Illumina [NR] (imputed)	N
1227	chr16	84209079	84209080	rs16962897	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	16q24.1	DNAAF1	rs16962897-A	0.12	3E-7	(EA)	1.7	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1227	chr16	84213683	84213684	rs4150167	22843504	Anney R	2012-07-26	Hum Mol Genet	Individual common variants exert weak effects on the risk for autism spectrum disorders.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	16q24.1	TAF1C	rs4150167-?	NR	3E-7	(Spectrum, all)	1.96	[1.52-2.56]	Illumina [947233]	N
1227	chr16	84214235	84214236	rs4150161	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	16q24.1	TAF1C	rs4150161-T	0.86	1E-6	(EA)	1.53	[NR] mmHg increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1227	chr16	84225678	84225679	rs8049634	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	16q24.1	ADAD2	rs8049634-G	0.248145728	1E-6		1.1792545	[1.102930622-1.260860039]	Illumina [10439017] (imputed)	N
1227	chr16	84271851	84271852	rs145986148	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	16q24.1	KCNG4	rs145986148-A	0.98	7E-7	(BDRABS, AA)	0.169	[0.1-0.24] unit increase	Illumina [NR] (imputed)	N
1227	chr16	84274404	84274405	rs746080	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	16q24.1	ADAD2, TAF1C, KCNG4, WFDC1	rs746080-T	0.31	6E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1228	chr16	84282098	84282100	rs10580412	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	16q24.1	NR	rs10580412-?	NR	4E-6		2.06	[1.86-2.28]	Illumina [539000] (imputed)	N
1228	chr16	84287405	84287406	rs453572	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.1	NR	rs453572-?	NR	2E-6				Affymetrix [NR]	N
1228	chr16	84290840	84290841	rs79562083	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	16q24.1	NR	rs79562083-?	NR	1E-8				Illumina [7760689] (imputed)	N
1228	chr16	84295483	84295484	rs145522449	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	16q24.1	KCNG4, WFDC1	rs145522449-T	0.9532	2E-8		7.5749	[4.93-10.22] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1228	chr16	84310398	84310399	rs138642423	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	16q24.1	NR	rs138642423-G	0.011	7E-6		0.477	[0.27-0.68] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1228	chr16	84328493	84328494	rs400345	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC1	5,360 Icelandic ancestry individuals	NA	16q24.1		rs400345-T	0.2044	9E-98		0.455367	[0.41-0.5] unit decrease	Illumina [7506463] (imputed)	N
1228	chr16	84328493	84328494	rs400345	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q24.1	WFDC1	rs400345-C	0.79140625	6E-54	(WFDC1, 9316_67_3)	0.45141447	[0.4-0.51] unit increase	Illumina [> 1000000] (imputed)	N
1228	chr16	84338233	84338234	rs16963349	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	16q24.1	WFDC1	rs16963349-C	0.002	1E-7	(drinks/week)	1.178	[0.67-1.68] unit increase	Affymetrix [2500000] (imputed)	N
1228	chr16	84339183	84339184	rs4782918	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death, myocardial infarction or stroke in response to clopidogrel treatment	72 European ancestry cases, 1,375 European ancestry controls	NA	16q24.1	WFDC1, ATP2C2	rs4782918-G	0.522901	3E-6		2.3190856	NR	Illumina [5009928] (imputed)	N
1228	chr16	84363325	84363326	rs9910	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.1	ATP2C2	rs9910-?	NR	4E-7	(3-phosphoglyceric acid)	0.31373262	[0.19-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1228	chr16	84404399	84404400	rs118158969	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	16q24.1	NR	rs118158969-T	NR	4E-6		0.138	[0.079-0.197] unit decrease	Illumina [6319684] (imputed)	N
1228	chr16	84408450	84408451	rs4782936	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	16q24.1	NR	rs4782936-?		3E-9	(SFTPD)	0.2729	[NR] unit decrease	Illumina [NR]	N
1229	chr16	84423033	84423034	rs8048576	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	16q24.1	ATP2C2	rs8048576-A	0.12	9E-13	(SP-D)			Illumina [588352]	N
1229	chr16	84438376	84438377	rs12597066	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.1	KIAA1609	rs12597066-?	NR	6E-6	(TAG 56:6)	0.2899194	[0.16-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1229	chr16	84446383	84446384	rs10514604	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	16q24.1	ATP2C2	rs10514604-?	NR	8E-7				Affymetrix [504219]	N
1229	chr16	84453055	84453056	rs1574587	30003630	Minica CC	2018-07-13	Addiction	GENOME-WIDE ASSOCIATION META-ANALYSIS OF AGE AT FIRST CANNABIS USE.	Cannabis use (age at onset)	24,953 European ancestry individuals	3,735 European ancestry individuals	16q24.1	NR	rs1574587-T	0.1415	9E-9		0.09	[0.059-0.121] unit increase	Affymetrix, Illumina, Perlegen [6163759] (imputed)	N
1229	chr16	84479580	84479581	rs16973813	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (parent-of-origin effect)	247 European ancestry trios, 7 European ancestry father-child pairs, 33 European ancestry mother-child pairs, 14 European ancestry affected child	NA	16q24.1	ATP2C2	rs16973813-?	NR	8E-6				Illumina [NR]	N
1230	chr16	84561360	84561361	rs142963458	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	16q24.1	TLDC1, COTL1	rs142963458-?	NR	2E-13		1.376	[1-1.75] unit decrease	Affymetrix [11100000] (imputed)	N
1230	chr16	84572495	84572496	rs57832043	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	16q24.1	NR	rs57832043-G	0.05	2E-6		1.18	[1.1-1.26]	Illumina [8468885] (imputed)	N
1230	chr16	84578240	84578241	rs371915	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	16q24.1	NR	rs371915-?	0.87	2E-8		1.9	[1.44-2.50]	Illumina [~ 550000]	N
1230	chr16	84580530	84580531	rs8055365	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	16q24.1	TLDC1, COTL1	rs8055365-?		6E-6	(Asian)	2.564103	[1.69-3.85]	Illumina [341191]	N
1230	chr16	84580530	84580531	rs8055365	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	16q24.1	KIAA1609	rs8055365-?	NR	5E-8		0.7	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
1230	chr16	84581683	84581684	rs247833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247833-G	0.755855	5E-12				Affymetrix, Illumina [17210439] (imputed)	N
1230	chr16	84581683	84581684	rs247833	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247833-A	0.233745	8E-13				Affymetrix, Illumina [19905671] (imputed)	N
1230	chr16	84581683	84581684	rs247833	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	TLDC1	rs247833-A	0.247	1E-16		0.03455179	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1230	chr16	84581822	84581822	rs71392781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q24.1		rs71392781-GAGGGGA	NR	2E-21		0.0253	[0.02-0.031] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1230	chr16	84581822	84581822	rs71392781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.1	TLDC1	rs71392781-GAGGGGA	0.251398	4E-14		0.019779526	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84581822	84581822	rs71392781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q24.1	NR	rs71392781-I	0.251307	2E-13		0.018001	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1230	chr16	84581892	84581893	rs247831	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q24.1	NR	rs247831-C	0.74662	3E-14		0.016873	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1230	chr16	84581892	84581893	rs247831	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	16q24.1	TLDC1, COTL1	rs247831-C	NR	9E-6		0.2177	[0.12-0.31] unit increase	Illumina [9290362] (imputed)	N
1230	chr16	84581924	84581925	rs247830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16q24.1	TLDC1	rs247830-C	0.303924	1E-10		0.015577155	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582824	84582825	rs247827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247827-A	0.154322	8E-14				Affymetrix, Illumina [21126107] (imputed)	N
1230	chr16	84582964	84582965	rs247826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16q24.1		rs247826-T	NR	1E-8		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1230	chr16	84582964	84582965	rs247826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q24.1		rs247826-T	NR	1E-36		0.0328	[0.028-0.038] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1230	chr16	84582964	84582965	rs247826	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	16q24.1		rs247826-C	0.778	2E-20				Affymetrix [10369434] (imputed)	N
1230	chr16	84582964	84582965	rs247826	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs247826-C	0.778	2E-19				Affymetrix [10369434] (imputed)	N
1230	chr16	84582964	84582965	rs247826	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	16q24.1		rs247826-C	0.778	3E-24				Affymetrix [10369434] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221583	2E-37		0.034199778	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221426	2E-12		0.019265397	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221573	7E-13		0.019205095	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221639	2E-37		0.034026626	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221695	5E-21		0.025340931	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.221611	3E-12		0.0182827	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q24.1	TLDC1	rs247826-T	0.22159	6E-46		0.038016513	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247826-T	0.204419	4E-55				Affymetrix, Illumina [24649327] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q24.1	NR	rs247826-T	0.220606	1E-51		0.033815	[0.029-0.038] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247826-T	0.208969	6E-15				Affymetrix, Illumina [23114412] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q24.1	NR	rs247826-T	0.220569	4E-17		0.01962	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247826-T	0.208345	4E-50				Affymetrix, Illumina [23467995] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q24.1	NR	rs247826-T	0.220727	7E-51		0.033986	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16q24.1	NR	rs247826-T	0.22153	1E-14		0.018791	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs247826-T	0.208353	2E-64				Affymetrix, Illumina [23472807] (imputed)	N
1230	chr16	84582964	84582965	rs247826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q24.1	NR	rs247826-T	0.220693	1E-63		0.038651	[0.034-0.043] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1230	chr16	84582964	84582965	rs247826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.1		rs247826-?	NR	2E-33				NR [~ 8900000] (imputed)	N
1230	chr16	84582964	84582965	rs247826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	16q24.1	TLDC1	rs247826-T	0.2213	4E-25		0.04508825	[0.037-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1230	chr16	84582964	84582965	rs247826	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16q24.1	TLDC1	rs247826-T	0.2213	2E-23		0.04361555	[0.035-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1230	chr16	84593370	84593371	rs12920021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.1	NR	rs12920021-C	NR	3E-9		0.0231	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1230	chr16	84598051	84598052	rs247870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q24.1		rs247870-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1230	chr16	84623483	84623484	rs1429264	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	16q24.1	COTL1	rs1429264-?	0.01	9E-7		8.4	[NR]	Affymetrix [4893794] (imputed)	N
1230	chr16	84631299	84631300	rs934166	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	16q24.1	COTL1	rs934166-A	NR	5E-6		4.581	NR z score decrease	Illumina [7839440] (imputed)	N
1230	chr16	84641904	84641905	rs2925049	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.1	COTL1	rs2925049-C	0.53107	5E-9		0.0108352	[0.0072-0.0145] unit increase	NR [13737936] (imputed)	N
1231	chr16	84685508	84685509	rs11647936	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	16q24.1	KLHL36	rs11647936-A	0.77	4E-6		2.29	[1.32-3.26 cm increase	Affymetrix [2073674] (imputed)	N
1231	chr16	84728953	84728954	rs61613787	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	16q24.1	USP10	rs61613787-?		9E-7		169.4	[101.98-236.82] unit increase	Illumina [~ 10000000] (imputed)	N
1231	chr16	84733283	84733284	rs12716755	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		16q24.1	Intergenic	rs12716755-A	0.608	6E-6	(liability model)	0.07	[0.031-0.109] unit increase	NR [19725427] (imputed)	N
1231	chr16	84742202	84742203	rs4783055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.1	USP10	rs4783055-A	0.745957	8E-10		0.01651466	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84742202	84742203	rs4783055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.1	USP10	rs4783055-A	0.745966	3E-10		0.017014662	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84747015	84747016	rs12445172	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16q24.1	USP10	rs12445172-G	0.2249	4E-14		0.020636378	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84751045	84751046	rs36008565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q24.1		rs36008565-G	NR	3E-18		0.0124	[0.0097-0.0151] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1231	chr16	84751045	84751046	rs36008565	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q24.1	NR	rs36008565-?	NR	5E-6		4.568	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1231	chr16	84753452	84753453	rs7187994	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q24.1	USP10	rs7187994-G	0.2258	5E-10		0.02700468	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1231	chr16	84753452	84753453	rs7187994	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.1	USP10	rs7187994-G	0.2258	2E-9		0.02608923	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1231	chr16	84764490	84764491	rs62048856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs62048856-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1231	chr16	84771705	84771705	rs111732569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q24.1		rs111732569-GTGCTGGCTTT	NR	6E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1231	chr16	84776070	84776071	rs11641007	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	16q24.1	NR	rs11641007-A	NR	4E-6		2.061	[1.52-2.80]	Illumina [13976150] (imputed)	N
1231	chr16	84779247	84779248	rs7185949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.1	USP10	rs7185949-G	0.220988	4E-20		0.024765372	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84779247	84779248	rs7185949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.1	USP10	rs7185949-G	0.220992	4E-19		0.024108179	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84779247	84779248	rs7185949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.1	USP10	rs7185949-G	0.221059	4E-15		0.02209278	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84779247	84779248	rs7185949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.1	USP10	rs7185949-G	0.221072	3E-14		0.021377016	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1231	chr16	84780201	84780202	rs12443928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs12443928-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1231	chr16	84780612	84780613	rs12920732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16q24.1	USP10	rs12920732-T	0.2204	5E-10		0.0268343	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1231	chr16	84780612	84780613	rs12920732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q24.1	USP10	rs12920732-T	0.2204	1E-9		0.02620205	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1231	chr16	84796602	84796603	rs12932018	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	16q24.1	USP10	rs12932018-?	NR	6E-6		0.25	[NR] unit increase	Affymetrix, Illumina [1348798]	N
1232	chr16	84808823	84808824	rs774298	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.1	USP10	rs774298-C	0.3689	4E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1232	chr16	84819949	84819950	rs40136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs40136-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1232	chr16	84838760	84838761	rs12921670	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q24.1	CRISPLD2	rs12921670-A	0.257	5E-19	(Cysteine-rich secretory protein LCCL domain-containing 2, CRISPLD2.5691.2.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1232	chr16	84844444	84844445	rs12600053	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	16q24.1	CRISPLD2	rs12600053-?	NR	9E-6		0.152	[0.085-0.219] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1232	chr16	84847822	84847823	rs7205113	34488071	Crist RC	2021-08-28	Drug Alcohol Depend	Analysis of genetic and clinical factors associated with buprenorphine response.	Response to buprenorphine in opioid use disorder	1,609 European ancestry individuals	NA	16q24.1		rs7205113-T	NR	8E-6		1.6486	[1.43-1.87]	Affymetrix [NR] (imputed)	N
1232	chr16	84856929	84856930	rs4782661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	16q24.1		rs4782661-C	NR	9E-13		0.0833	[0.06-0.106] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1232	chr16	84857377	84857378	rs2131755	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16q24.1	CRISPLD2	rs2131755-G	0.406873363518421	2E-10		0.0034941	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1232	chr16	84865508	84865509	rs9319453	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.1	CRISPLD2	rs9319453-T	0.6671	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix [18391927] (imputed)	N
1232	chr16	84872194	84872195	rs965984074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q24.1		rs965984074-C	0.001251	2E-11		0.209299	[0.15-0.27] unit decrease	Illumina [13479295] (imputed)	N
1232	chr16	84878091	84878091	rs138028171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q24.1	CRISPLD2	rs138028171-CT	NR	4E-8		0.0325199	[0.021-0.044] unit increase	Affymetrix [321114] (imputed)	N
1232	chr16	84885776	84885777	rs2641697	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	16q24.1	CRISPLD2	rs2641697-G	0.36	6E-6	(European)	2.0		Illumina [7993459] (imputed)	N
1232	chr16	84895650	84895651	rs144759316	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISPLD2	5,366 Icelandic ancestry individuals	NA	16q24.1		rs144759316-T	0.01034	8E-33		1.15122	[0.96-1.34] unit decrease	Illumina [7506463] (imputed)	N
1232	chr16	84896256	84896257	rs60910901	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q24.1	CRISPLD2	rs60910901-A	0.98890625	2E-18	(CRISPLD2, 5691_2_3)	1.012022	[0.79-1.24] unit increase	Illumina [> 1000000] (imputed)	N
1232	chr16	84900644	84900645	rs149615348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q24.1	NR	rs149615348-A	0.006	3E-17	(Cysteine-rich secretory protein LCCL domain-containing 2, CRISPLD2.5691.2.3)	1.35	[1.04-1.66] unit decrease	Affymetrix [10572788] (imputed)	N
1232	chr16	84901474	84901475	rs4303473	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs4303473-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1232	chr16	84901474	84901475	rs4303473	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q24.1	CRISPLD2	rs4303473-C	0.388	1E-6		0.032	[0.019-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1232	chr16	84902482	84902483	rs72799568	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRISPLD2	5,366 Icelandic ancestry individuals	NA	16q24.1		rs72799568-T	0.05163	8E-27		0.453163	[0.37-0.54] unit decrease	Illumina [7506463] (imputed)	N
1232	chr16	84902482	84902483	rs72799568	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q24.1	NR	rs72799568-T	0.056	7E-13	(Cysteine-rich secretory protein LCCL domain-containing 2, CRISPLD2.5691.2.3)	0.4	[0.28-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1232	chr16	84907524	84907525	rs143938998	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q24.1		rs143938998-?	NR	2E-11		0.323295	[0.23-0.42] unit decrease	NR [9800000] (imputed)	N
1232	chr16	84918861	84918862	rs774205	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIF1	5,344 Icelandic ancestry individuals	NA	16q24.1		rs774205-G	0.3227	9E-15		0.135435	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
1232	chr16	84919524	84919525	rs35254673	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	16q24.1	CRISPLD2	rs35254673-G	0.2545	3E-8		1.09	1.06-1.13	Affymetrix [18689289] (imputed)	N
1233	chr16	84941664	84941665	rs79754226	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	16q24.1	NR	rs79754226-A	NR	1E-6	(African)	0.5027	[0.3-0.71] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1233	chr16	84981973	84981974	rs8054554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs8054554-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1233	chr16	84984454	84984455	rs4783103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q24.1	RP11-254F19.3	rs4783103-T	NR	3E-9		0.0212098	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
1233	chr16	84987318	84987319	rs118135095	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	16q24.1	NR	rs118135095-G		1E-6		0.5728	[0.34-0.81] SD units increase	NR [10700000] (imputed)	N
1233	chr16	84987678	84987679	rs2326458	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	16q24.1	ZDHHC7	rs2326458-A	0.751	5E-10		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1233	chr16	84987678	84987679	rs2326458	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	16q24.1	ZDHHC7, CRISPLD2, USP10	rs2326458-C	0.26	8E-7		5.1	[3.14-7.06] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1233	chr16	84987946	84987947	rs9941239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs9941239-?	NR	1E-29				NR [~ 8900000] (imputed)	N
1233	chr16	84996446	84996447	rs4783107	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	7,834 European ancestry cases, 15,258 European ancestry controls	NA	16q24.1	ZDHHC7	rs4783107-T	NR	2E-6		0.4538	NR unit increase	Affymetrix [557813] (imputed)	N
1233	chr16	85055740	85055741	rs4597304	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	16q24.1	NR	rs4597304-?	NR	4E-6		2.733	[NR]	Illumina [4196861] (imputed)	N
1234	chr16	85092684	85092685	rs41337248	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.1	NR	rs41337248-?	NR	4E-8				Affymetrix [NR]	N
1234	chr16	85092747	85092748	rs8056742	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	16q24.1	KIAA0513	rs8056742-C	0.11	5E-7	(Joint)	1.27	[1.14-1.41]	Illumina [254145]	N
1234	chr16	85103884	85103885	rs17789174	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	16q24.1	KIAA0513	rs17789174-?	NR	7E-6		2.57	[1.71-3.89]	Illumina [4196861] (imputed)	N
1234	chr16	85104128	85104129	rs56888354	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	16q24.1	KIAA0513	rs56888354-?		6E-6				Illumina [4322238] (imputed)	N
1234	chr16	85150162	85150163	rs79311290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q24.1		rs79311290-G	NR	4E-10		0.0247	[0.017-0.033] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1234	chr16	85150162	85150163	rs79311290	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q24.1	FAM92B	rs79311290-A	0.89192	7E-11		0.0220913	[0.015-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1234	chr16	85150162	85150163	rs79311290	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q24.1	FAM92B	rs79311290-A	0.89194	9E-9		0.018448	[0.012-0.025] unit increase	Affymetrix [NR] (imputed)	N
1234	chr16	85150162	85150163	rs79311290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q24.1	NR	rs79311290-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1234	chr16	85150162	85150163	rs79311290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q24.1		rs79311290-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1234	chr16	85195421	85195422	rs4589542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.1		rs4589542-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1235	chr16	85198964	85198965	rs4471666	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	16q24.1	intergenic	rs4471666-?	NR	3E-8		0.0291	[0.02-0.038] unit decrease	Affymetrix [5701386] (imputed)	N
1235	chr16	85201404	85201405	rs8054322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs8054322-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1235	chr16	85237330	85237331	rs11644665	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs11644665-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1235	chr16	85244966	85244967	rs8058723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs8058723-T	NR	7E-9		0.019101	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1235	chr16	85244966	85244967	rs8058723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs8058723-T	NR	5E-9		0.0193546	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1235	chr16	85249183	85249184	rs56078619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs56078619-G	NR	9E-9		0.0204789	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1235	chr16	85249183	85249184	rs56078619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs56078619-G	NR	2E-9		0.0214942	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1235	chr16	85251412	85251413	rs11649660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs11649660-G	NR	2E-10		0.0224066	[0.015-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1235	chr16	85251412	85251413	rs11649660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q24.1	CTC-786C10.1	rs11649660-G	NR	8E-10		0.0217035	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1235	chr16	85251412	85251413	rs11649660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	16q24.1	NR	rs11649660-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1235	chr16	85251412	85251413	rs11649660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.1	NR	rs11649660-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1235	chr16	85251412	85251413	rs11649660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	16q24.1		rs11649660-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1235	chr16	85252078	85252079	rs12595970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	16q24.1	NR	rs12595970-A	NR	5E-10		0.0187	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1235	chr16	85258190	85258191	rs7198287	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	16q24.1	NA	rs7198287-T	0.2182	6E-10		0.0138	[0.0095-0.0181] unit decrease	NR [~ 27400000] (imputed)	N
1235	chr16	85261962	85261963	rs16975388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	16q24.1	NR	rs16975388-C	0.7826	2E-9		0.0136	[0.0091-0.0181] unit increase	NR [~ 27400000] (imputed)	N
1235	chr16	85261962	85261963	rs16975388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	16q24.1	NR	rs16975388-C	0.7824	8E-10		0.0137	[0.0094-0.018] unit increase	NR [~ 27400000] (imputed)	N
1235	chr16	85266859	85266860	rs12931671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q24.1	COX6CP16	rs12931671-C	NR	5E-8		0.0157366	[0.01-0.021] unit decrease	Affymetrix [321114] (imputed)	N
1235	chr16	85268130	85268131	rs4072252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	16q24.1	COX6CP16	rs4072252-T	NR	4E-8		0.015846	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1235	chr16	85290821	85290822	rs138224646	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GSE1	rs138224646-?	NR	3E-10		3.13443	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1235	chr16	85293482	85293483	rs4258599	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q24.1	NR	rs4258599-C	0.335483	2E-9		0.020003	[0.013-0.027] unit increase	NR [19129689] (imputed)	N
1235	chr16	85298711	85298712	rs3934541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	16q24.1		rs3934541-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1235	chr16	85300078	85300079	rs4517782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q24.1		rs4517782-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1235	chr16	85314216	85314217	rs2930240	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	16q24.1		rs2930240-?	NR	8E-7		2.88	[1.99-4.18]	Affymetrix, Illumina [29826485] (imputed)	N
1235	chr16	85318301	85318302	rs7187540	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	16q24.1	LINC00311	rs7187540-A	0.3368	1E-10		0.1766	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1235	chr16	85318558	85318559	rs11863116	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	16q24.1	LINC00311, GSE1, GINS2, FAM92B	rs11863116-?	NR	3E-7	(EA)	0.0124	[0.012-0.013] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1235	chr16	85319398	85319399	rs12447206	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		16q24.1	NR	rs12447206-A	NR	2E-8		0.048775	NR unit increase	NR [NR] (imputed)	N
1235	chr16	85321482	85321483	rs2966858	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q24.1	NR	rs2966858-T	0.204686	3E-17		0.0325334	[0.025-0.04] unit decrease	NR [19129689] (imputed)	N
1235	chr16	85323515	85323516	rs139929928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q24.1		rs139929928-T	NR	1E-9		0.0449	[0.031-0.059] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1236	chr16	85335734	85335735	rs2968426	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	16q24.1	MIR5093	rs2968426-G	0.255075	8E-9	(EA)	0.00822175	[0.0054-0.011] unit increase	Affymetrix [~ 8800000] (imputed)	N
1236	chr16	85361859	85361860	rs2326524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs2326524-G	0.826	9E-15		0.023227701	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr16	85375674	85375675	rs112485629	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.1	NR	rs112485629-T	0.01045	2E-8	(ACSM2B)	2.024	NR unit increase	Illumina [1671387] (imputed)	N
1236	chr16	85411640	85411641	rs8056420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs8056420-A	0.830974	4E-44		0.044945013	[0.039-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr16	85411640	85411641	rs8056420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.1		rs8056420-A	0.830943	3E-10		0.019280272	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85414354	85414355	rs76563408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16q24.1	intergenic	rs76563408-A	0.0791	3E-18		0.05961325	[0.046-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
1236	chr16	85415392	85415393	rs4783181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs4783181-A	0.345616	3E-19		0.02417134	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85415464	85415465	rs4783183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q24.1		rs4783183-G	NR	2E-45		0.0371	[0.032-0.042] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1236	chr16	85415464	85415465	rs4783183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q24.1	NR	rs4783183-G	0.875536	9E-51		0.043839	[0.038-0.05] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1236	chr16	85415464	85415465	rs4783183	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	16q24.1	MIR5093, GSE1	rs4783183-?	NR	2E-11		0.03388	[0.024-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1236	chr16	85415625	85415626	rs4783185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.1		rs4783185-G	0.875562	9E-13		0.024399858	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85415625	85415626	rs4783185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs4783185-G	0.847798	7E-62				Affymetrix, Illumina [24588908] (imputed)	N
1236	chr16	85415625	85415626	rs4783185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	16q24.1	NR	rs4783185-A	0.229063	2E-12		0.031102	[0.022-0.04] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1236	chr16	85415625	85415626	rs4783185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs4783185-A	0.128587	6E-19				Affymetrix, Illumina [17210439] (imputed)	N
1236	chr16	85415625	85415626	rs4783185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q24.1	NR	rs4783185-A	0.124331	2E-21		0.027814	[0.022-0.034] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1236	chr16	85415733	85415734	rs4783186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	16q24.1		rs4783186-C	0.767687	2E-14		0.0300485	[0.022-0.038] unit decrease	Illumina [13478928] (imputed)	N
1236	chr16	85415733	85415734	rs4783186	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16q24.1		rs4783186-T	0.124	8E-15				Affymetrix [10369434] (imputed)	N
1236	chr16	85415733	85415734	rs4783186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs4783186-C	0.875588	3E-50		0.053637274	[0.047-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85415733	85415734	rs4783186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.1		rs4783186-C	0.8756	2E-42		0.046842102	[0.04-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr16	85415733	85415734	rs4783186	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16q24.1	intergenic	rs4783186-C	0.8767	3E-14		0.04217097	[0.031-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1236	chr16	85415837	85415838	rs4783187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.1		rs4783187-C	0.876287	1E-26		0.03655658	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr16	85415837	85415838	rs4783187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16q24.1	intergenic	rs4783187-C	0.8779	2E-10		0.03564258	[0.025-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1236	chr16	85417011	85417012	rs4783189	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16q24.1	intergenic	rs4783189-G	0.8644	8E-18		0.0463026	[0.036-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
1236	chr16	85428946	85428947	rs8052629	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16q24.1		rs8052629-A	0.567	1E-9				Affymetrix [10369434] (imputed)	N
1236	chr16	85437627	85437628	rs60643529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.1		rs60643529-C	0.657177	4E-10		0.0150649855	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85443269	85443270	rs202099642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.1		rs202099642-G	0.281901	5E-9		0.015660364	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85443269	85443270	rs202099642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.1		rs202099642-G	0.281901	1E-12		0.019071044	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85447183	85447184	rs7404202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs7404202-T	0.861642	2E-14		0.026319956	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr16	85452694	85452695	rs1552272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs1552272-T	0.647682	4E-13		0.017954638	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1236	chr16	85452694	85452695	rs1552272	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16q24.1	intergenic	rs1552272-T	0.6457	6E-18		0.03256372	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1237	chr16	85487972	85487973	rs118091226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q24.1		rs118091226-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1237	chr16	85541800	85541801	rs189060489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	16q24.1	NR	rs189060489-A	0.9945	1E-11		0.325	[0.23-0.42] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
1237	chr16	85557978	85557979	rs7500151	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	16q24.1	intergenic	rs7500151-G	NR	5E-6		1.1848341		Illumina [1233578] (imputed)	N
1238	chr16	85595359	85595360	rs183401583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1		rs183401583-C	0.00350899999999998	2E-17		0.16856918	[0.13-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85603704	85603705	rs55706221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	16q24.1		rs55706221-C	0.609111	4E-8		0.0263466	[0.017-0.036] unit decrease	Illumina [13470073] (imputed)	N
1238	chr16	85603839	85603840	rs56280896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.1		rs56280896-G	0.546991	9E-11		0.014446133	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85603839	85603840	rs56280896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.1		rs56280896-G	0.547016	3E-10		0.014012555	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85611860	85611861	rs75179080	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GSE1	rs75179080-?	NR	3E-8	(female)	2.2728	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1238	chr16	85625126	85625127	rs4240810	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	16q24.1	KIAA0182	rs4240810-?		7E-6				Illumina [859311]	N
1238	chr16	85637631	85637632	rs139489600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	16q24.1		rs139489600-C	0.014866	2E-16		0.177977	[0.14-0.22] unit increase	Illumina [13469940] (imputed)	N
1238	chr16	85637631	85637632	rs139489600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	16q24.1		rs139489600-C	NR	2E-16		0.178	[0.14-0.22] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1238	chr16	85639392	85639393	rs150938367	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	16q24.1	intergenic	rs150938367-?	NR	4E-7		9.72	[4.04-23.39]	Illumina [9380034] (imputed)	N
1238	chr16	85684493	85684494	rs192896828	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs192896828-G	0.983	4E-16				Affymetrix [10369434] (imputed)	N
1238	chr16	85684493	85684494	rs192896828	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs192896828-G	0.983	2E-11				Affymetrix [10369434] (imputed)	N
1238	chr16	85685119	85685120	rs733324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1	GSE1	rs733324-A	0.258155	7E-51		0.039022814	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85690337	85690338	rs4843185	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	16q24.1	GSE1	rs4843185-A	0.2713	4E-18		0.03528489	[0.027-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	16q24.1		rs61751198-?	NR	9E-11		0.0675467	[0.045-0.09] unit decrease	NR [9800000] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	16q24.1		rs61751198-?	NR	2E-17		0.103007	[0.079-0.127] unit increase	NR [9800000] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.1	GSE1	rs61751198-T	0.00730900000000001	2E-10		0.084331065	[0.058-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.1	GSE1	rs61751198-T	0.00726700000000002	1E-19		0.118735686	[0.093-0.144] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.1	GSE1	rs61751198-T	0.00725900000000002	1E-14		0.10070565	[0.075-0.126] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	16q24.1	GSE1	rs61751198-T	0.00726899999999997	4E-11		0.08631075	[0.061-0.112] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16q24.1	GSE1	rs61751198-T	0.00727199999999995	5E-9		0.07628875	[0.051-0.102] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs61751198-A	0.993079	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q24.1	NR	rs61751198-A	0.992732	6E-12		0.083393	[0.06-0.107] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1238	chr16	85696634	85696635	rs61751198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.1		rs61751198-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1238	chr16	85699201	85699201	rs10650779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.1	GSE1	rs10650779-TACA	0.459199	4E-13		0.016248927	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85700359	85700360	rs12149202	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	16q24.1	NR	rs12149202-?	NR	8E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1238	chr16	85706416	85706423	rs3060245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.1	GSE1	rs3060245-A	0.274654	7E-14		0.019019855	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr16	85706416	85706423	rs3060245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16q24.1	GSE1	rs3060245-A	0.2745	4E-12		0.02852232	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1238	chr16	85706632	85706633	rs1049868	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q24.1		rs1049868-C	0.29	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
1238	chr16	85706632	85706633	rs1049868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16q24.1		rs1049868-T	0.713	1E-14				Affymetrix [10369434] (imputed)	N
1238	chr16	85706632	85706633	rs1049868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.1	GSE1	rs1049868-C	0.287548	3E-17		0.021239474	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr16	85707366	85707367	rs871290	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q24.1	GSE1	rs871290-C	0.323	2E-8		0.0139	[0.009-0.0188] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1238	chr16	85709609	85709610	rs8571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q24.1		rs8571-A	NR	2E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1238	chr16	85712104	85712105	rs3815795	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	16q24.1		rs3815795-T	0.303681	5E-7		1.1838523	NR	Affymetrix [7846216] (imputed)	N
1238	chr16	85716462	85716463	rs11646052	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q24.1	NR	rs11646052-G	0.3918	3E-8		0.0263	[0.017-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1238	chr16	85716462	85716463	rs11646052	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q24.1	NR	rs11646052-G	0.4116	3E-11		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1238	chr16	85719657	85719658	rs11117258	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	16q24.1	NR	rs11117258-G	0.3062	5E-8		0.014578905	[0.0093-0.0198] unit increase	Affymetrix [10613246] (imputed)	N
1239	chr16	85721808	85721809	rs13332432	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	16q24.1	NR	rs13332432-G	0.296	4E-11		0.013294072	[0.0093-0.0172] unit increase	Affymetrix [NR] (imputed)	N
1239	chr16	85735651	85735652	rs377457	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	16q24.1	C16orf74	rs377457-A	0.697	6E-7	(Japanese)	1.08	[1.05-1.11]	Illumina [7521072] (imputed)	N
1239	chr16	85792887	85792888	rs439967	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	16q24.1	IRF8	rs439967-A	0.398	2E-6		1.388	[1.213 - 1.588]	Illumina [5398302] (imputed)	N
1239	chr16	85808321	85808322	rs301157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.1	EMC8	rs301157-T	0.797705	7E-13		0.0199522	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr16	85810348	85810349	rs301161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.1	EMC8	rs301161-A	0.850154	6E-13		0.02249075	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr16	85810348	85810349	rs301161	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16q24.1	EMC8	rs301161-A	0.8486	9E-11		0.03240836	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1239	chr16	85810348	85810349	rs301161	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16q24.1	EMC8	rs301161-A	0.8486	7E-11		0.03248523	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1239	chr16	85819520	85819521	rs4843788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.1		rs4843788-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1239	chr16	85836255	85836256	rs2733954	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	16q24.1	COX4I1	rs2733954-C	0.721	4E-7		1.14	[NR]	Illumina [4577171] (imputed)	N
1240	chr16	85886753	85886754	rs12050947	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	16q24.1	Intergenic	rs12050947-G	NR	1E-6		0.0297703	[0.018-0.042] unit decrease	Illumina [13520550] (imputed)	N
1240	chr16	85887595	85887596	rs3866568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs3866568-G	0.385386	1E-15		0.01982226	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85901235	85901236	rs72805167	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs72805167-A	0.934	3E-10				Affymetrix [10369434] (imputed)	N
1240	chr16	85904221	85904222	rs62052470	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs62052470-G	0.93	5E-30				Affymetrix [10369434] (imputed)	N
1240	chr16	85906131	85906132	rs72805168	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs72805168-T	0.91	1E-57				Affymetrix [10369434] (imputed)	N
1240	chr16	85906615	85906616	rs11648716	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	16q24.1	COX4I1	rs11648716-G	0.08	7E-6	(EA-triglyceride response)	39.68	[22.37-56.99] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1240	chr16	85910150	85910151	rs7195289	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs7195289-C	0.71	2E-32				Affymetrix [10369434] (imputed)	N
1240	chr16	85926694	85926695	rs12922615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs12922615-T	0.066096	6E-50		0.076909006	[0.067-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85926720	85926721	rs395498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	intergenic	rs395498-G	0.3488	6E-116		0.08593058	[0.079-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85927012	85927013	rs434216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	intergenic	rs434216-C	0.3592	1E-80		0.07122175	[0.064-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85927518	85927519	rs896263	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q24.1		rs896263-G	0.25884700000000005	3E-16		1.0409017	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
1240	chr16	85927813	85927814	rs391023	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	16q24.1	IRF8	rs391023-G	0.63	5E-17		1.33	[NR]	Illumina [549934]	N
1240	chr16	85927870	85927871	rs375288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs375288-A	0.334951	3E-13		0.02835406	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85928620	85928621	rs391855	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	16q24.1	IRF8	rs391855-A	NR	1E-28		1.34	[1.27-1.41]	Affymetrix, Illumina [> 10000000] (imputed)	N
1240	chr16	85928620	85928621	rs391855	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	16q24.1	IRF8	rs391855-A	0.5660000000000001	1E-22		1.369863	[1.28-1.45]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1240	chr16	85928704	85928705	rs12149363	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	16q24.1	NR	rs12149363-?	NR	2E-9		0.05043	[0.034-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1240	chr16	85929281	85929282	rs369173	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs369173-T	0.563	2E-127				Affymetrix [10369434] (imputed)	N
1240	chr16	85929281	85929282	rs369173	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs369173-T	0.563	1E-99				Affymetrix [10369434] (imputed)	N
1240	chr16	85929281	85929282	rs369173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q24.1	NR	rs369173-G	0.437019	7E-476		0.089406	[0.086-0.093] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.1	IRF8	rs56177354-T	0.059418	1E-9		0.029830692	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs56177354-T	0.059414	2E-121		0.12287988	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs56177354-T	0.059415	6E-86		0.10077593	[0.091-0.111] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q24.1		rs56177354-T	0.940646	2E-13		1.0723442	[1.05-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	IRF8	rs56177354-T	0.0623	2E-111		0.1730887	[0.16-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	IRF8	rs56177354-T	0.0624	7E-79		0.1455713	[0.13-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85932651	85932652	rs56177354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs56177354-T	0.0624	2E-98		0.1629393	[0.15-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85934515	85934515	rs34993178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	IRF8	rs34993178-AT	0.0633	7E-102		0.1589751	[0.14-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85934515	85934515	rs34993178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	IRF8	rs34993178-AT	0.0632	2E-82		0.1431196	[0.13-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85934515	85934515	rs34993178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs34993178-AT	0.0633	5E-83		0.143641	[0.13-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85935210	85935211	rs1519978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs1519978-T	0.168414	4E-27		0.06712575	[0.055-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85935877	85935878	rs305083	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs305083-G	0.168666	2E-43				Affymetrix, Illumina [23114412] (imputed)	N
1240	chr16	85936262	85936263	rs12924316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs12924316-T	0.185239	3E-143		0.10477856	[0.097-0.113] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85936389	85936389	rs144009594	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	16q24.1		rs144009594-T	0.6287	2E-8		0.0697	[0.046-0.094] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr16	85936389	85936389	rs144009594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs144009594-TGGTGGCTGCA	0.433764	5E-69		0.06212339	[0.055-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85936389	85936389	rs144009594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs144009594-TGGTGGCTGCA	0.433708	2E-127		0.107184164	[0.098-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85936389	85936389	rs144009594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs144009594-TGGTGGCTGCA	0.433685	2E-208		0.11072229	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85936389	85936389	rs144009594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs144009594-TGGTGGCTGCA	0.433755	7E-14		0.017105361	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85936392	85936392	rs11268025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16q24.1		rs11268025-TGGTGGCTGCA	NR	3E-338		0.0867	[0.082-0.091] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1240	chr16	85936395	85936395	rs113899791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	16q24.1	IRF8	rs113899791-TGGTGGCTGCA	0.433	1E-39		0.04855977	[0.041-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936395	85936395	rs113899791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	IRF8	rs113899791-TGGTGGCTGCA	0.433	3E-226		0.1179164	[0.11-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936395	85936395	rs113899791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	IRF8	rs113899791-TGGTGGCTGCA	0.4329	7E-160		0.09923963	[0.092-0.106] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936395	85936395	rs113899791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs113899791-TGGTGGCTGCA	0.4328	5E-205		0.1125578	[0.11-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936977	85936978	rs305082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q24.1	NR	rs305082-C	0.172255	3E-45		0.036633	[0.032-0.042] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1240	chr16	85936977	85936978	rs305082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	16q24.1	IRF8	rs305082-C	0.1724	1E-15		0.03834502	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936977	85936978	rs305082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs305082-C	0.1722	8E-131		0.1159606	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85936977	85936978	rs305082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	16q24.1	IRF8	rs305082-C	0.1723	8E-16		0.03857763	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85938594	85938595	rs11642583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.1	IRF8	rs11642583-G	0.14383	3E-31		0.03803661	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85938754	85938755	rs9926664	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	16q24.1	IRF8	rs9926664-G	0.1447	1E-15		0.04092021	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85938754	85938755	rs9926664	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	16q24.1	IRF8	rs9926664-G	0.1447	1E-15		0.04098921	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85941773	85941774	rs305080	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (maternal effect)	1,743 Norwegian ancestry mothers	NA	16q24.1	IRF8	rs305080-A		5E-6				NR [525577]	N
1240	chr16	85943465	85943466	rs305077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs305077-C	0.338172	6E-87		0.092971176	[0.084-0.102] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85944438	85944439	rs391525	21131588	Slager SL	2010-12-03	Blood	Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL.	Chronic lymphocytic leukemia	407 European ancestry cases, 296 European ancestry controls	252 European ancestry cases, 965 European ancestry controls	16q24.1	IRF8	rs391525-?	0.66	3E-9		1.56	[1.35-1.82]	Affymetrix [827777]	N
1240	chr16	85944822	85944823	rs2292982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	IRF8	rs2292982-G	0.3385	9E-81		0.07181204	[0.064-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85944822	85944823	rs2292982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	IRF8	rs2292982-G	0.3385	6E-55		0.05908152	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85944822	85944823	rs2292982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs2292982-G	0.3383	2E-77		0.07046505	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85945248	85945249	rs16939945	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs16939945-C	0.971	3E-45				Affymetrix [10369434] (imputed)	N
1240	chr16	85945248	85945249	rs16939945	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs16939945-C	0.971	1E-44				Affymetrix [10369434] (imputed)	N
1240	chr16	85945248	85945249	rs16939945	31794020	Matana A	2019-12-03	J Clin Endocrinol Metab	Genome-wide analysis identifies two susceptibility loci for positive thyroid peroxidase and thyroglobulin antibodies.	Thyroid autoantibody positivity (anti-thyroglobulin (TgAb) and/or anti-thyroid peroxidase  (TPOAb) levels)	619 Croatian ancestry cases, 1,994 Croatian ancestry controls	NA	16q24.1	IRF8	rs16939945-T	0.04	5E-8		0.23	[0.15-0.31] unit increase	Illumina [7411206] (imputed)	N
1240	chr16	85945838	85945839	rs147968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs147968-C	0.452142	7E-389				Affymetrix, Illumina [23467995] (imputed)	N
1240	chr16	85946449	85946450	rs424971	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte count	5,892 Dutch ancestry individuals	NA	16q24.1	IRF8	rs424971-?	NR	8E-6				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1240	chr16	85946449	85946450	rs424971	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	16q24.1	IRF8	rs424971-G	0.47	3E-16		0.22	unit decrease	Illumina [NR]	N
1240	chr16	85947474	85947475	rs8064111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs8064111-T	0.128815	2E-31		0.0762234	[0.063-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85947474	85947475	rs8064111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	IRF8	rs8064111-T	0.1294	5E-153		0.1409652	[0.13-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85947474	85947475	rs8064111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	IRF8	rs8064111-T	0.1294	5E-105		0.1167757	[0.11-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85947474	85947475	rs8064111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	IRF8	rs8064111-T	0.1294	6E-137		0.133706	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85947750	85947751	rs182056137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs182056137-A	0.00793600000000005	3E-13		0.10020283	[0.073-0.127] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85949895	85949896	rs305068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q24.1		rs305068-G	NR	1E-25		0.0345	[0.028-0.041] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1240	chr16	85949895	85949896	rs305068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs305068-G	0.141183	7E-40		0.050723247	[0.043-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85951257	85951258	rs12926854	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q24.1	IRF8	rs12926854-A	0.730087	7E-9		0.0123559	[0.0082-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1240	chr16	85951681	85951682	rs8058904	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q24.1		rs8058904-G	0.836899	6E-16		1.046177	[1.03-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1240	chr16	85952144	85952145	rs142267779	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	16q24.1		rs142267779-?	NR	2E-63		0.264068	[0.23-0.3] unit increase	NR [9800000] (imputed)	N
1240	chr16	85952279	85952280	rs28368114	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	16q24.1		rs28368114-?	NR	6E-20		0.210101	[0.16-0.26] unit increase	NR [9800000] (imputed)	N
1240	chr16	85952279	85952280	rs28368114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs28368114-A	0.00167499999999998	5E-12		0.19318794	[0.14-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85952950	85952951	rs13338943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	IRF8	rs13338943-T	0.106102	1E-16		0.032693066	[0.025-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85953195	85953196	rs8057456	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	16q24.1	IRF8	rs8057456-T	0.4418	3E-11		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
1240	chr16	85953954	85953955	rs3751712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.1	IRF8	rs3751712-C	0.390024	2E-27		0.03841651	[0.031-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85955670	85955671	rs1044873	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	16q24.1	IRF8	rs1044873-C	0.61	1E-9		1.29	[NR]	Illumina [450000] (imputed)	N
1240	chr16	85957413	85957414	rs1021479	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	16q24.1	NR	rs1021479-?	NR	3E-9	(conditional on round 4)	0.0367549	[0.025-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
1240	chr16	85960732	85960733	rs117917886	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs117917886-G	0.981	5E-8				Affymetrix [10369434] (imputed)	N
1240	chr16	85961561	85961562	rs17444745	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QRS duration	455 African American individuals	NA	16q24.1	intergenic	rs17444745-A		7E-6		6.4	[NR] ms decrease	Illumina [> 930000]	N
1240	chr16	85963014	85963015	rs78336251	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs78336251-G	0.946	4E-20				Affymetrix [10369434] (imputed)	N
1240	chr16	85963014	85963015	rs78336251	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs78336251-G	0.946	1E-11				Affymetrix [10369434] (imputed)	N
1240	chr16	85966268	85966269	rs186454026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.3	rs186454026-A	4.88999999999962E-4	5E-9		0.30443308	[0.2-0.41] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85966268	85966269	rs186454026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	RP11-542M13.3	rs186454026-A	4.88999999999962E-4	6E-11		0.34032091	[0.24-0.44] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85966547	85966548	rs76121846	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs76121846-A	0.845	8E-104				Affymetrix [10369434] (imputed)	N
1240	chr16	85966547	85966548	rs76121846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	RP11-542M13.3	rs76121846-G	0.153993	1E-17		0.034500018	[0.027-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85966682	85966683	rs13332649	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	16q24.1	IRF8	rs13332649-?	0.21	5E-17	(EA)	1.37	[NR]	NR [6344733] (imputed)	N
1240	chr16	85966682	85966683	rs13332649	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	16q24.1	IRF8	rs13332649-A		2E-18		1.34	[NR]	Illumina [> 644674] (imputed)	N
1240	chr16	85967284	85967285	rs12444221	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	16q24.1		rs12444221-T	NR	3E-6		0.120029	[0.069-0.171] unit decrease	NR [2787054] (imputed)	N
1240	chr16	85967639	85967640	rs447632	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q24.1	NR	rs447632-A	0.495	7E-28		0.851	[0.82-0.88]	Illumina [11270530] (imputed)	N
1240	chr16	85968268	85968269	rs75580819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	16q24.1		rs75580819-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1240	chr16	85971921	85971922	rs11117420	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	16q24.1	IRF8	rs11117420-?	0.81	4E-15		1.2345679		Illumina [4723365]	N
1240	chr16	85972611	85972612	rs11644034	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	16q24.1	IRF8	rs11644034-G		1E-17		1.25	[1.19-1.32]	Illumina [644674]	N
1240	chr16	85973027	85973028	rs12711490	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	RP11-542M13.3	rs12711490-C	0.2308	1E-65		0.07314192	[0.065-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85973027	85973028	rs12711490	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	16q24.1	IRF8	rs12711490-?	NR	3E-10		1.28	[NR]	Illumina [NR]	N
1240	chr16	85973139	85973140	rs11641153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	RP11-542M13.3	rs11641153-G	0.2282	8E-93		0.08750669	[0.079-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85973139	85973140	rs11641153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	RP11-542M13.3	rs11641153-G	0.2283	2E-75		0.07897264	[0.071-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85974141	85974142	rs305064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	RP11-542M13.3	rs305064-T	0.351899	1E-27		0.030228144	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85974180	85974181	rs9927123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.3	rs9927123-G	0.355018	7E-12		0.026293507	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85975140	85975141	rs4843869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs4843869-A	0.228253	2E-17		0.04282121	[0.033-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85975140	85975141	rs4843869	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	16q24.1	NR	rs4843869-?	NR	6E-9		0.05427	[0.036-0.073] unit increase novel	Illumina [6108953] (imputed)	N
1240	chr16	85975658	85975659	rs305061	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	16q24.1	NR	rs305061-?	0.73	9E-8		1.33	[1.2-1.49]	Affymetrix, Illumina [~ 1500000] (imputed)	N
1240	chr16	85979116	85979117	rs305092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.1		rs305092-G	0.629512	4E-22		0.024844417	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85980533	85980534	rs731708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.1		rs731708-A	0.206694	1E-12		0.022333656	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85980533	85980534	rs731708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.1		rs731708-A	0.206654	3E-22		0.027997125	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1240	chr16	85980967	85980968	rs731707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs731707-C	0.491696	6E-14		0.022531798	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1240	chr16	85983055	85983056	rs6540234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	intergenic	rs6540234-C	0.7157	5E-57		0.06294797	[0.055-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1240	chr16	85983055	85983056	rs6540234	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	intergenic	rs6540234-C	0.7156	1E-42		0.05408768	[0.046-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85985360	85985361	rs4240807	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	16q24.1	IRF8	rs4240807-C	NR	7E-7				Illumina [10806625] (imputed)	N
1241	chr16	85989463	85989464	rs11640143	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs11640143-C	0.076922	6E-70		0.09096954	[0.081-0.101] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	85989463	85989464	rs11640143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	intergenic	rs11640143-C	0.0776	6E-89		0.1359217	[0.12-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85989463	85989464	rs11640143	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	intergenic	rs11640143-C	0.0777	9E-75		0.1243398	[0.11-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85990266	85990267	rs11117426	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs11117426-T	0.794	5E-113				Affymetrix [10369434] (imputed)	N
1241	chr16	85990266	85990267	rs11117426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1		rs11117426-C	0.205256	4E-25		0.04218562	[0.034-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	85991399	85991400	rs75479997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	intergenic	rs75479997-T	0.1124	2E-22		0.05485719	[0.044-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85991704	85991705	rs11642873	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-centromere-positive)	671 European ancestry cases, 3,466 European ancestry controls, 21 African American cases, 260 African American controls	NA	16q24.1	IRF8	rs11642873-?		4E-6	(EA)			Illumina [~ 2500000] (imputed)	N
1241	chr16	85991704	85991705	rs11642873	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	16q24.1	IRF8	rs11642873-?	NR	3E-10	(EA)			Illumina [~ 2500000] (imputed)	N
1241	chr16	85991704	85991705	rs11642873	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	16q24.1	IRF8	rs11642873-?	0.81	2E-12	(IcSSc)	1.33	[1.23-1.45]	Illumina [NR] (imputed)	N
1241	chr16	85992648	85992649	rs12444486	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	16q24.1	IRF8	rs12444486-T	0.5	2E-7		1.16	[1.10-1.23]	Illumina [~ 2100000] (imputed)	N
1241	chr16	85993133	85993134	rs2361763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	intergenic	rs2361763-T	0.4749	4E-67		0.06251537	[0.055-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85993133	85993134	rs2361763	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	16q24.1	NR	rs2361763-C	0.494	3E-6		1.72	[1.37-2.16]	Illumina [7261187] (imputed)	N
1241	chr16	85993579	85993580	rs10863203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1		rs10863203-T	0.276728	1E-11		0.018122032	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	85994483	85994484	rs35929052	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	16q24.1	IRF8	rs35929052-?	NR	2E-9		1.2048193	[1.14-1.28]	Illumina [6450125] (imputed)	N
1241	chr16	85994483	85994484	rs35929052	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	16q24.1	IRF8	rs35929052-G	0.88	6E-12		1.15		Illumina [161311]	N
1241	chr16	85995435	85995436	rs113646461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs113646461-T	0.923	7E-60				Affymetrix [10369434] (imputed)	N
1241	chr16	85995435	85995436	rs113646461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1		rs113646461-C	0.076952	3E-44		0.07294138	[0.063-0.083] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	85995435	85995436	rs113646461	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	intergenic	rs113646461-C	0.0767	3E-97		0.139778	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	85996256	85996257	rs11649461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs11649461-C	0.321	3E-39				Affymetrix [10369434] (imputed)	N
1241	chr16	86001902	86001903	rs34912238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.1		rs34912238-T	0.217092	2E-24		0.027591428	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86001902	86001903	rs34912238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs34912238-T	0.194422	4E-28				Affymetrix, Illumina [19872809] (imputed)	N
1241	chr16	86001902	86001903	rs34912238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.1		rs34912238-?	NR	1E-37				NR [~ 8900000] (imputed)	N
1241	chr16	86002116	86002117	rs35655122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1		rs35655122-T	0.23696	6E-12		0.019137835	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1241	chr16	86002466	86002467	rs9929885	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q24.1	NR	rs9929885-T	0.21884	9E-31		0.027938	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1241	chr16	86002593	86002593	rs142105922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	intergenic	rs142105922-AAAT	0.2039	4E-138		0.1117765	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86002635	86002636	rs34825241	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	16q24.1	intergenic	rs34825241-G	0.1874	3E-23		0.04711869	[0.038-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86002635	86002636	rs34825241	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16q24.1	intergenic	rs34825241-G	0.1874	2E-14		0.03642636	[0.027-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86002635	86002636	rs34825241	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16q24.1	intergenic	rs34825241-G	0.1874	5E-14		0.03588062	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86003030	86003031	rs4843325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q24.1		rs4843325-C	NR	1E-9		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1241	chr16	86003030	86003031	rs4843325	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs4843325-T	0.202	2E-21				Affymetrix [10369434] (imputed)	N
1241	chr16	86003057	86003058	rs4843326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs4843326-T	0.202	2E-35				Affymetrix [10369434] (imputed)	N
1241	chr16	86004109	86004110	rs12932970	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16q24.1	intergenic	rs12932970-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
1241	chr16	86009685	86009686	rs2361755	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	16q24.1	NR	rs2361755-G	0.92	6E-14	(EA)	1.1951665	[1.15-1.24]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1241	chr16	86009739	86009740	rs16940186	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs16940186-T	0.85	8E-34				Affymetrix [10369434] (imputed)	N
1241	chr16	86009739	86009740	rs16940186	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	16q24.1	IRF8	rs16940186-G	0.21	4E-10		1.56	[1.36-1.80]	Illumina [581060]	N
1241	chr16	86009759	86009760	rs12232384	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	intergenic	rs12232384-A	0.2244	1E-10		0.02739768	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86011032	86011033	rs13333054	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	16q24.1	IRF8	rs13333054-A	NR	1E-8		1.11	[1.1-1.13]	Illumina [465434]	N
1241	chr16	86011336	86011337	rs10521318	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	16q24.1	LOC146513, IRF8	rs10521318-?	NR	4E-6		1.4925373	[1.27-1.79]	Illumina [NR]	N
1241	chr16	86011336	86011337	rs10521318	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	16q24.1	IRF8	rs10521318-C	0.915	1E-9		1.155	[1.094-1.219]	Affymetrix, Illumina [1230000] (imputed)	N
1241	chr16	86012598	86012599	rs9674233	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	16q24.1	IRF8, LINC01082	rs9674233-?	NR	2E-20		0.05266	[0.042-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1241	chr16	86013342	86013343	rs1401885	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs1401885-G	0.871	6E-22				Affymetrix [10369434] (imputed)	N
1241	chr16	86013342	86013343	rs1401885	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs1401885-G	0.871	7E-19				Affymetrix [10369434] (imputed)	N
1241	chr16	86013550	86013551	rs1401884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs1401884-C	0.199315	3E-24		0.028207628	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86014240	86014241	rs16940202	32072174	Okamoto D	2020-02-19	Inflamm Bowel Dis	Genetic Analysis of Ulcerative Colitis in Japanese Individuals Using Population-specific SNP Array.	Ulcerative colitis	601 Japanese ancestry cases, 1,962 Japanese ancestry controls	1,075 Japanese ancestry cases, 419 Japanese ancestry controls	16q24.1	IRF8	rs16940202-?	NR	7E-6		1.28	[1.15-1.42]	NR [4760823] (imputed)	N
1241	chr16	86014240	86014241	rs16940202	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	16q24.1	Intergenic	rs16940202-?		3E-10				Illumina [9578670] (imputed)	N
1241	chr16	86014240	86014241	rs16940202	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	16q24.1	Intergenic	rs16940202-?		3E-11				Illumina [9725440] (imputed)	N
1241	chr16	86014240	86014241	rs16940202	23511034	Yang SK	2013-04-01	Inflamm Bowel Dis	Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.	Ulcerative colitis	388 Korean ancestry cases, 739 Korean ancestry controls	417 Korean ancestry cases, 732 Korean ancestry controls	16q24.1	intergenic	rs16940202-C	0.22	3E-9		1.52	[1.32-1.74]	Illumina [581060]	N
1241	chr16	86014240	86014241	rs16940202	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	16q24.1	intergenic	rs16940202-C	0.18	6E-19		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1241	chr16	86014454	86014455	rs11649485	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q24.1		rs11649485-G	0.798105	5E-41		1.0747945	[1.06-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
1241	chr16	86014880	86014881	rs11641016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q24.1		rs11641016-G	NR	2E-27		0.0232	[0.019-0.027] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1241	chr16	86014880	86014881	rs11641016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs11641016-G	0.196386	2E-18		0.033762358	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86014880	86014881	rs11641016	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	16q24.1	NR	rs11641016-?	NR	1E-16	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1241	chr16	86015315	86015316	rs11117431	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	16q24.1	IRF8	rs11117431-?	NR	6E-11		1.2195122	[1.15-1.28]	Illumina [at least 5000000] (imputed)	N
1241	chr16	86015315	86015316	rs11117431	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	16q24.1	RP11-542M13.2	rs11117431-?	NR	5E-16	(subset analysis)			Illumina [130052]	N
1241	chr16	86016025	86016026	rs9933582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	16q24.1		rs9933582-G	0.425158	9E-32		0.0534348	[0.045-0.062] unit increase	Illumina [13471440] (imputed)	N
1241	chr16	86016025	86016026	rs9933582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	16q24.1	NR	rs9933582-T	0.579785	9E-26		0.053083	[0.043-0.063] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1241	chr16	86016090	86016091	rs9939427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs9939427-A	0.230849	3E-18		0.023035558	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86016090	86016091	rs9939427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs9939427-A	0.243919	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q24.1		rs11642657-T	NR	2E-28		0.1629	[0.13-0.19] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.00739299999999998	1E-38		0.17975163	[0.15-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.00739999999999996	2E-19		0.12694235	[0.099-0.155] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.007409	1E-75		0.27002758	[0.24-0.3] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.00741000000000003	2E-190		0.42348635	[0.4-0.45] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs11642657-C	0.992714	3E-42				Affymetrix, Illumina [24649327] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q24.1	NR	rs11642657-C	0.992495	2E-43		0.161261	[0.14-0.18] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.1		rs11642657-?	NR	7E-39				NR [~ 8900000] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.009	2E-12		0.1459982	[0.11-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.009	6E-13		0.1501155	[0.11-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.009	2E-24		0.2097587	[0.17-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.009	1E-48		0.3025294	[0.26-0.34] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86016327	86016328	rs11642657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs11642657-T	0.009	6E-16		0.1670751	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86016400	86016401	rs9927316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	16q24.1		rs9927316-G	0.42274	2E-10		0.0227226	[0.016-0.03] unit increase	Illumina [13479091] (imputed)	N
1241	chr16	86016400	86016401	rs9927316	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	16q24.1		rs9927316-C	NR	2E-11		0.91	[0.89-0.94]	NR [13810676] (imputed)	N
1241	chr16	86016400	86016401	rs9927316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs9927316-G	0.238203	2E-80		0.05346815	[0.048-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86017662	86017663	rs17445836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16q24.1	RP11-542M13.2	rs17445836-A	0.2311	3E-10		0.02686111	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1241	chr16	86017662	86017663	rs17445836	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	16q24.1	IRF8	rs17445836-G	0.81	4E-9		1.25	[1.12-1.39]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1241	chr16	86018474	86018475	rs7193275	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	16q24.1		rs7193275-C	0.147452	7E-39		1.0797535	[1.07-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
1241	chr16	86018632	86018633	rs2280381	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	16q24.1	IRF8	rs2280381-T	0.84	2E-6		1.12	[1.07-1.17]	Affymetrix, Illumina [1948139]	N
1241	chr16	86018860	86018861	rs6540239	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	16q24.1	IRF8	rs6540239-T	NR	4E-7		1.2977	NR	Illumina [up to 1244428] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.1	RP11-542M13.2	rs13330176-A	0.238526	5E-95		0.056531128	[0.051-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q24.1	IRF8	rs13330176-A	NR	5E-6		1.0546	NR	Affymetrix, Illumina [8278136] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16q24.1	IRF8	rs13330176-A	NR	2E-10		0.0753667	[-0.00194-0.15267] unit increase	Illumina [8380626] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	16q24.1	IRF8	rs13330176-A	0.23	9E-9	(EA)	0.1172	[0.077-0.157] unit increase	Illumina [8380626] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	16q24.1	IRF8	rs13330176-A	0.24	2E-8		1.12	[1.08-1.17]	Illumina [133816] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16q24.1	IRF8	rs13330176-A	0.3	1E-12		1.12	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	16q24.1	IRF8	rs13330176-A	0.23	9E-9	(EA)	1.12	[1.08-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	16q24.1	IRF8	rs13330176-A	0.22	5E-9		1.1475	(Immunochip only)	Illumina [129464] (imputed)	N
1241	chr16	86019086	86019087	rs13330176	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	16q24.1	IRF8	rs13330176-A	0.22	2E-7				Illumina [129464] (imputed)	N
1241	chr16	86019270	86019271	rs11117432	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	16q24.1		rs11117432-A	NR	3E-24		0.273228	[0.22-0.33] unit decrease	NR [5054572] (imputed)	N
1241	chr16	86019270	86019271	rs11117432	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	16q24.1	IRF8	rs11117432-A	0.088	1E-32		0.728	[0.68-0.78]	Illumina [11270530] (imputed)	N
1241	chr16	86019270	86019271	rs11117432	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	16q24.1	intergenic	rs11117432-G	0.76	5E-11		1.31	[1.21-1.43]	Illumina [507467]	N
1241	chr16	86019515	86019516	rs11117433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	16q24.1		rs11117433-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1241	chr16	86019515	86019516	rs11117433	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	16q24.1	IRF8	rs11117433-?	NR	2E-11		1.1764705	[1.11-1.25]	Illumina [at least 5000000] (imputed)	N
1241	chr16	86019515	86019516	rs11117433	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	16q24.1	IRF8	rs11117433-G	0.77	1E-9		1.26	[1.17-1.36]	Illumina [237619] (imputed)	N
1241	chr16	86021504	86021505	rs35703946	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q24.1	IRF8	rs35703946-G	NR	3E-17		1.1315	NR	Affymetrix, Illumina [8278136] (imputed)	N
1241	chr16	86021504	86021505	rs35703946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	16q24.1		rs35703946-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1241	chr16	86024733	86024734	rs12596402	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs12596402-T	0.651	9E-14				Affymetrix [10369434] (imputed)	N
1241	chr16	86024837	86024838	rs1568388	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	16q24.1		rs1568388-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1241	chr16	86024837	86024838	rs1568388	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	16q24.1		rs1568388-A	0.651	8E-11				Affymetrix [10369434] (imputed)	N
1241	chr16	86053833	86053834	rs6540246	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.1	NR	rs6540246-?	NR	8E-7				Affymetrix [NR]	N
1241	chr16	86075100	86075101	rs17818245	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	16q24.1		rs17818245-A	0.907	1E-14				Affymetrix [10369434] (imputed)	N
1241	chr16	86097477	86097478	rs56360131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q24.1		rs56360131-T	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1241	chr16	86097477	86097478	rs56360131	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q24.1	IRF8, FOXF1	rs56360131-T	0.19	1E-8		5.67	z-score increase	Affymetrix [4314223] (imputed)	N
1241	chr16	86097477	86097478	rs56360131	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.1	intergenic	rs56360131-T	0.1955	4E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1241	chr16	86104141	86104142	rs8050326	23857890	Power RA	2013-07-15	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis accounting for environmental factors through propensity-score matching: application to stressful live events in major depressive disorder.	Major depressive disorder	805 European ancestry cases, 805 European ancestry controls	NA	16q24.1	IRF8	rs8050326-A	0.44	3E-7		1.45	[1.26-1.76]	Illumina [457670]	N
1242	chr16	86114653	86114654	rs4843343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q24.1		rs4843343-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1242	chr16	86122523	86122524	rs13336880	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16q24.1	LINC01082, IRF8	rs13336880-A	0.2252	1E-8		0.4883	[0.32-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1242	chr16	86134815	86134816	rs752342640	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	16q24.1	RP11-805I24.1	rs752342640-C	0.0012	2E-6		1.8603	[1.1-2.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1242	chr16	86138101	86138102	rs16944687	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	16q24.1	NR	rs16944687-G	0.203	7E-6		0.1126	[0.063-0.162] unit increase	Illumina [up to 1980188] (imputed)	N
1242	chr16	86139684	86139685	rs9923770	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	16q24.1	NR	rs9923770-T	0.5083	5E-7		0.1038	[0.063-0.144] unit increase	Illumina [up to 1980188] (imputed)	N
1242	chr16	86166798	86166799	rs147496540	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	16q24.1	IRF8, LINC01082	rs147496540-T	0.0175	8E-6		0.4292	[0.24-0.62] unit decrease	NR [NR] (imputed)	N
1242	chr16	86171279	86171280	rs2352930	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	16q24.1	intergenic	rs2352930-?	NR	7E-6		2.5	[1.68-3.73]	Illumina [4196861] (imputed)	N
1242	chr16	86184638	86184639	rs904199	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16q24.1	LINC01082, IRF8	rs904199-G	0.08	8E-10		0.73	[0.49-0.97] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1242	chr16	86186071	86186072	rs1809845	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	16q24.1	intergenic	rs1809845-G	0.984197222222222	7E-6		0.124588	[0.07-0.179] unit increase	Illumina [1632371] (imputed)	N
1242	chr16	86233412	86233413	rs2280028	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16q24.1	LINC01082	rs2280028-A	0.142187256970047	7E-11		0.0050202	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1242	chr16	86236235	86236236	rs276961	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.1	NR	rs276961-?	NR	6E-10				Affymetrix [NR]	N
1242	chr16	86241925	86241926	rs60305860	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	16q24.1		rs60305860-C	0.0012971	9E-6		0.42082	[0.24-0.61] unit decrease	Affymetrix [15580782] (imputed)	N
1243	chr16	86249484	86249485	rs9938195	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	16q24.1	MUSP1	rs9938195-?	NR	8E-6				Illumina [NR]	N
1243	chr16	86252543	86252544	rs12447408	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	16q24.1	LINC00917	rs12447408-A	0.2535	7E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1243	chr16	86253715	86253716	rs904200	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	16q24.1	NR	rs904200-?		7E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
1243	chr16	86254050	86254051	rs847208	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	16q24.1	FENDRR	rs847208-A	0.67	3E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1243	chr16	86254050	86254051	rs847208	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	16q24.1	NR	rs847208-A	NR	3E-9		1.107	[1.071-1.145]	Illumina [6774630] (imputed)	N
1243	chr16	86275971	86275972	rs1693956	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vinblastine	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	16q24.1		rs1693956-?	NR	8E-7				Illumina [1510701]	N
1243	chr16	86292367	86292368	rs112180833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.1		rs112180833-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1243	chr16	86304260	86304261	rs7191751	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA		intergenic	rs7191751-?		2E-6				NR [~ 3000000] (imputed)	N
1243	chr16	86322458	86322459	rs987052	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	intergenic	rs987052-G	0.438	7E-7	(NEFA )	0.03	[NR] mmol/L increase	Illumina [899892]	N
1243	chr16	86327720	86327721	rs2696860	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference	298 individuals	NA	16q24.1	NR	rs2696860-?	NR	1E-8			[NR]	NR [1665663]	N
1243	chr16	86335350	86335351	rs7200646	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	16q24.1	LINC01081, LINC00917	rs7200646-C	0.34	4E-6		1.09	[1.05 - 1.13]	Illumina [11381182] (imputed)	N
1243	chr16	86338287	86338288	rs7206216	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	16q24.1	NR	rs7206216-?	NR	7E-8		0.0441	[0.028-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
1243	chr16	86339314	86339315	rs12149163	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	16q24.1	LOC146513, LINC00917, FOXL1	rs12149163-T	0.4976	5E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1243	chr16	86340447	86340448	rs2696839	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	16q24.1	NR	rs2696839-G	NR	1E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [> 10000000] (imputed)	N
1243	chr16	86356581	86356582	rs731749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q24.1		rs731749-A	NR	2E-12		0.0256	[0.019-0.033] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1243	chr16	86356581	86356582	rs731749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q24.1		rs731749-A	NR	7E-15		0.0263	[0.02-0.033] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1243	chr16	86356581	86356582	rs731749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q24.1		rs731749-A	NR	1E-16		0.0287	[0.022-0.036] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.1		rs731749-A	0.08855	9E-15		0.030630982	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.1		rs731749-A	0.0885240000000001	2E-22		0.03874435	[0.031-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.1		rs731749-A	0.088551	3E-24		0.04035642	[0.033-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs731749-A	0.0849414	4E-18				Affymetrix, Illumina [24332387] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q24.1	NR	rs731749-A	0.086511	9E-21		0.031705	[0.025-0.038] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs731749-A	0.0846685	1E-25				Affymetrix, Illumina [24653286] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q24.1	NR	rs731749-A	0.086253	2E-27		0.036802	[0.03-0.043] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.1	NR	rs731749-A	0.0846697	5E-29				Affymetrix, Illumina [24558453] (imputed)	N
1243	chr16	86356581	86356582	rs731749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q24.1	NR	rs731749-A	0.08626	3E-31		0.039524	[0.033-0.046] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1243	chr16	86356581	86356582	rs731749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.1		rs731749-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1243	chr16	86356581	86356582	rs731749	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q24.1	intergenic	rs731749-A	0.0783	1E-8		0.32	[0.21-0.43] mmHg increase	Affymetrix [NR] (imputed)	N
1243	chr16	86357244	86357245	rs8059356	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	16q24.1	NR	rs8059356-A	0.21	6E-7		2.23	[1.92-2.54]	NR [up to 6398204] (imputed)	N
1243	chr16	86362267	86362268	rs149754507	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.1	NR	rs149754507-A	0.01394	2E-8	(VAPB)	0.05933	NR unit increase	Illumina [1671387] (imputed)	N
1243	chr16	86365570	86365571	rs2696835	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	16q24.1	IRF8, LOC732275	rs2696835-C	0.03	3E-6		2.27	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1243	chr16	86368525	86368526	rs4083242	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	LOC401864, LOC732275	rs4083242-A	0.336	1E-7	(Sedentary&light activity )	0.03	[NR] min/d increase	Illumina [899892]	N
1243	chr16	86369879	86369880	rs2696842	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	16q24.1	NR	rs2696842-?	NR	2E-6	(EA)	0.4964	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1243	chr16	86374207	86374208	rs2581305	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	16q24.1	LINC00917	rs2581305-?		4E-7		0.608	[NR] unit decrease	Illumina [5970354] (imputed)	N
1244	chr16	86376930	86376931	rs34406692	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.1	LINC00917	rs34406692-T	0.0655	6E-14		0.0278	[0.021-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1244	chr16	86379106	86379107	rs1622797	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	16q24.1	LINC00917	rs1622797-T	0.089	3E-8		0.022	[0.014-0.03] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1244	chr16	86381183	86381184	rs11641231	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	16q24.1	LOC401864, LOC283904, LOC729464	rs11641231-G	0.23	8E-6	(HDL, sum)			Illumina [~ 2500000] (imputed)	N
1244	chr16	86386887	86386888	rs1728367	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q24.1	LINC00917, FENDRR	rs1728367-C	0.09	1E-15		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1244	chr16	86388329	86388330	rs1994653	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Maximum retinal arteriolar tortuosity	3,094 European ancestry individuals	NA	16q24.1	FOXF1-AS1	rs1994653-G	NR	4E-7		0.15	[0.093-0.207] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1244	chr16	86394763	86394764	rs113773212	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	16q24.1	NR	rs113773212-?	0.05	2E-6		1.2820514	[1.16-1.41]	Illumina [~ 1113287] (imputed)	N
1244	chr16	86396834	86396835	rs1979654	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	16q24.1	LOC732275, FOXF1	rs1979654-G		3E-8		1.11	[1.08-1.16]	Illumina [11951684] (imputed)	N
1244	chr16	86403117	86403118	rs9936833	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	16q24.1	FOXF1, LOC732275	rs9936833-C	0.37	3E-10		1.14	[1.10-1.19]	Illumina [521744]	N
1244	chr16	86403820	86403821	rs12918140	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q24.1	LINC00917	rs12918140-C	0.1146	7E-13		0.027	[0.02-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1244	chr16	86403820	86403821	rs12918140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q24.1		rs12918140-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1244	chr16	86408182	86408183	rs78910009	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	16q24.1	Intergenic	rs78910009-T	NR	5E-7	(between families)	5.024	unit increase	Affymetrix [up to 15107142] (imputed)	N
1244	chr16	86417233	86417234	rs8054549	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.1	intergenic	rs8054549-A	0.4486	3E-39		0.0251	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
1244	chr16	86417323	86417324	rs8047465	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	16q24.1	NR	rs8047465-?	NR	5E-9		0.13008	[0.086-0.174] unit decrease	Affymetrix [7794483] (imputed)	N
1244	chr16	86417348	86417349	rs8059189	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	16q24.1	NR	rs8059189-A	0.404492	2E-9		0.0621855	[0.042-0.082] unit decrease	Affymetrix [21375087] (imputed)	N
1244	chr16	86417348	86417349	rs8059189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs8059189-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1244	chr16	86419515	86419516	rs1728380	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q24.1	NR	rs1728380-A	0.448013	2E-11		0.046234	[0.033-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
1244	chr16	86420360	86420361	rs1687657	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	16q24.1	LINC00917	rs1687657-T	NR	3E-7	(Hispanic)	2.34		Illumina [at least 360704] (imputed)	N
1244	chr16	86421269	86421270	rs11117487	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	16q24.1	intergenic	rs11117487-A	0.157846	6E-6		0.234424	[0.13-0.34] unit increase	NR [7263501] (imputed)	N
1244	chr16	86422111	86422112	rs1728407	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q24.1	FOXF1	rs1728407-A	0.550403	1E-8		0.0115007	[0.0076-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
1244	chr16	86434445	86434446	rs1728400	25526632	Rafiq S	2014-12-19	PLoS One	A genome wide meta-analysis study for identification of common variation associated with breast cancer prognosis.	Breast cancer (survival)	1,341 European ancestry cases	1,523 European ancestry cases	16q24.1	LOC732275, FOXF1	rs1728400-?	NR	6E-6		1.25	[1.13-1.39]	Illumina [6500000] (imputed)	N
1244	chr16	86436610	86436611	rs3950628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q24.1		rs3950628-G	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1244	chr16	86437766	86437767	rs8045253	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	16q24.1	FOXF1-AS1	rs8045253-C	0.348	6E-7		1.19	[NR]	Illumina [8207076] (imputed)	N
1244	chr16	86437810	86437811	rs3851018	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	16q24.1	FOXF1	rs3851018-G	0.43069999999999997	5E-10		0.1918	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1244	chr16	86455296	86455297	rs12927656	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	16q24.1	NR	rs12927656-?	NR	9E-6		0.1712	[0.095-0.247] unit increase	Illumina [at least 560000] (imputed)	N
1244	chr16	86463694	86463695	rs2178146	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	16q24.1	FOXF1	rs2178146-A	0.587	4E-6		1.1765	[1.1-1.27]	Illumina [922031]	N
1244	chr16	86463694	86463695	rs2178146	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	16q24.1	FOXF1	rs2178146-A	0.587	1E-6		1.1364	[1.09-1.2]	Illumina [922031]	N
1244	chr16	86465333	86465334	rs35526343	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	16q24.1	FENDRR	rs35526343-C	0.96	9E-13		0.02	[0.016-0.024] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1244	chr16	86485130	86485131	rs11644988	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		16q24.1	FOXF1	rs11644988-G	0.12	2E-6		0.128	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1244	chr16	86495861	86495862	rs62051935	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 19)	4,680 European ancestry individuals	3,566 European ancestry individuals	16q24.1		rs62051935-A	0.180815877	2E-13				Illumina [7417619] (imputed)	N
1245	chr16	86511857	86511858	rs7187191	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	16q24.1	FENDRR	rs7187191-T	0.18	2E-13		0.0082	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1245	chr16	86511914	86511915	rs7187365	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	16q24.1	FOXF1	rs7187365-C	0.82	6E-6		1.22	[1.12-1.33]	Affymetrix [~ 2000000] (imputed)	N
1245	chr16	86515958	86515959	rs78669990	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	16q24.1	FENDRR, FOXF1	rs78669990-T	0.116	2E-8		1.299	NR	Illumina [at least 870261] (imputed)	N
1245	chr16	86521489	86521490	rs9929215	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	16q24.1	Intergenic	rs9929215-?		3E-6		1.767	[NR]	Affymetrix [492217] (imputed)	N
1245	chr16	86524156	86524157	rs12918742	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	16q24.1	NR	rs12918742-A	0.08	3E-6		1.0309278	[-1.04667-3.10853]	Affymetrix [at least 143006] (imputed)	N
1245	chr16	86536622	86536623	rs3096355	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	16q24.1	FENDRR	rs3096355-?		2E-6	(corrected for APOE4 status)	0.12	[NR] unit increase	Illumina [5137218] (imputed)	N
1245	chr16	86567928	86567929	rs3866634	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	16q24.1	MTHFSD	rs3866634-G	0.93	2E-6	(female)	0.32	[0.18-0.46] unit increase	Illumina [7411206] (imputed)	N
1245	chr16	86579222	86579223	rs6539952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	16q24.1	MTHFSD	rs6539952-A	0.2615	7E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1245	chr16	86579222	86579223	rs6539952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	16q24.1	MTHFSD	rs6539952-A	0.2615	4E-10		0.017	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1245	chr16	86579222	86579223	rs6539952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q24.1		rs6539952-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1245	chr16	86590890	86590891	rs7197427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs7197427-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1245	chr16	86605410	86605411	rs67089055	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q24.1		rs67089055-T	0.19	2E-12		7.03	z score increase	Affymetrix [9061022] (imputed)	N
1245	chr16	86605410	86605411	rs67089055	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q24.1	NR	rs67089055-T	0.1904	1E-10				NR [9056863] (imputed)	N
1245	chr16	86608897	86608899	rs61646804	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	16q24.1	FOXC2, FOXL1	rs61646804-?	NR	2E-7		0.029	[0.018-0.041] unit increase	Illumina [12039491] (imputed)	N
1245	chr16	86609301	86609302	rs7199751	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	16q24.1	FOXL1	rs7199751-T	0.2246	8E-7				Affymetrix, Illumina [9900000] (imputed)	N
1245	chr16	86609301	86609302	rs7199751	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	16q24.1	FOXL1	rs7199751-T	0.2246	3E-6		0.0337	[0.019-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1245	chr16	86609301	86609302	rs7199751	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	16q24.1	FOXL1	rs7199751-T	0.2246	3E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1245	chr16	86609301	86609302	rs7199751	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	16q24.1	FOXL1	rs7199751-T	0.2246	2E-7		0.0369	[0.023-0.051] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1245	chr16	86609301	86609302	rs7199751	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	16q24.1	FOXL1	rs7199751-T	0.2246	2E-6		0.0343	[0.02-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1245	chr16	86621218	86621219	rs111580313	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	16q24.1	MTHFSD, FOXL1, FOXC2	rs111580313-?		5E-6	(Dominant)	1.7	[1.40-2.20]	Illumina [5600610] (imputed)	N
1245	chr16	86629046	86629047	rs4843407	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	16q24.1	FOXL1	rs4843407-?	0.2662	4E-12		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1246	chr16	86641021	86641022	rs2120692	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	896 European ancestry major depressive disorder cases, 934 European ancestry individuals	NA	16q24.1	NR	rs2120692-?		3E-6		2384.0	[NR] unit increase	Illumina [4278941] (imputed)	N
1246	chr16	86680995	86680996	rs300032	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q24.1	NR	rs300032-G	0.146304785746102	9E-8	(IGP63)	0.2433	[0.15-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
1246	chr16	86680995	86680996	rs300032	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	16q24.1	NR	rs300032-G	0.146183376056965	3E-7	(IGP67)	0.2336	[0.14-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1246	chr16	86681030	86681031	rs1867485	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	16q24.1	FOXL1	rs1867485-G	0.395	3E-6	(BMR RQ)	0.04	[NR] unit increase	Illumina [899892]	N
1246	chr16	86685418	86685419	rs4843416	26950853	Dehghan A	2016-03-07	PLoS One	Genome-Wide Association Study for Incident Myocardial Infarction and Coronary Heart Disease in Prospective Cohort Studies: The CHARGE Consortium.	Incident myocardial infarction	1,570 European ancestry cases, at least 21,618 European ancestry controls	2,328 European ancestry cases, 546 African American ancestry cases, 7655 African American ancestry controls, up to 35,233 European ancestry controls	16q24.1	FOXL1	rs4843416-G	NR	7E-6	(EA)	1.4285715	[1.22-1.67]	Affymetrix, Illumina [2543842] (imputed)	N
1246	chr16	86686971	86686972	rs10514617	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs10514617-?	NR	3E-26		0.0284551	[0.023-0.034] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86689334	86689335	rs4843418	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs4843418-?	NR	4E-15		0.0173319	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86693836	86693837	rs78765336	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	16q24.1	FOXL1	rs78765336-T	0.03	8E-6		2.173913		Illumina [4903804] (imputed)	N
1246	chr16	86694416	86694417	rs299938	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs299938-?	NR	2E-17		0.0199662	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr16	86695719	86695720	rs16941835	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	16q24.1	FOXL1	rs16941835-?	0.21	5E-8		1.16	[1.09-1.22]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1246	chr16	86698489	86698490	rs62042066	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	16q24.1	MTHFSD, LINC02189	rs62042066-G	0.277038	2E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1246	chr16	86699162	86699163	rs12444314	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	16q24.1	FOXL1, LINC02189	rs12444314-?	NR	4E-9		0.0319142	[0.021-0.043] unit increase	Illumina [4804024] (imputed)	N
1246	chr16	86699723	86699724	rs61403071	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	16q24.1	intergenic	rs61403071-T	0.288	8E-7		0.034	[0.02-0.048] unit increase	Affymetrix [7947838] (imputed)	N
1246	chr16	86699766	86699767	rs899245	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16q24.1	FOXL1	rs899245-A	0.217065074529387	2E-6		0.0030797	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1246	chr16	86699766	86699767	rs899245	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs899245-?	NR	4E-21		0.0224029	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr16	86700029	86700030	rs899244	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	16q24.1	NR	rs899244-T	0.21	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [> 10000000] (imputed)	N
1246	chr16	86700864	86700865	rs12918331	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs12918331-?	NR	2E-19		0.0194216	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr16	86701425	86701426	rs7203324	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs7203324-?	NR	4E-21		0.0224682	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1246	chr16	86703948	86703949	rs62042090	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	16q24.1	FOXL1	rs62042090-T	0.2164	5E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1246	chr16	86704863	86704864	rs28594464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.1		rs28594464-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1246	chr16	86704863	86704864	rs28594464	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs28594464-?	NR	7E-26		0.0256878	[0.02-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86705099	86705100	rs416675	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs416675-?	NR	2E-26		0.0257787	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86707768	86707769	rs7188801	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	16q24.1	FOXL1	rs7188801-G	0.80	8E-6	(VOS)	0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
1246	chr16	86708071	86708071	rs148672458	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs148672458-?	NR	2E-43		0.0390103	[0.033-0.045] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86708740	86708741	rs388466	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs388466-?	NR	1E-41		0.0284249	[0.024-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86709730	86709731	rs12932673	31887566	Carrion-Castillo A	2019-11-29	Cortex	Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment.	Right planum temporale grey matter volume	18,039 British ancestry individuals	NA	16q24.1	NR	rs12932673-G	0.189	2E-8		5.5896	NR unit decrease	Affymetrix [15120452] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q24.1		rs10048146-G	0.16	6E-45		14.07	z score increase	Affymetrix [9061022] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q24.1		rs10048146-G	0.16	1E-20		9.33	z score increase	Affymetrix [9061022] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q24.1	NR	rs10048146-G	0.1906	1E-17				NR [9056863] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q24.1	MAP3K1, SETD9, MIER3	rs10048146-?		8E-12				NR [7428630] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	16q24.1	FOXL1	rs10048146-A	0.81	5E-14		0.026	[0.019-0.033] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	16q24.1	FOXL1	rs10048146-A	0.81	4E-13		0.051	[0.037-0.065] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	16q24.1	FOXL1	rs10048146-A	0.8	1E-14		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	16q24.1	FOXL1	rs10048146-G	0.19	2E-8		0.09	[0.06-0.12] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1246	chr16	86710659	86710660	rs10048146	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	16q24.1	FOXL1	rs10048146-G	0.19	2E-7		0.09	[0.06-0.12] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q24.1		rs71390846-C	NR	5E-15		0.0122	[0.0091-0.0153] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	16q24.1		rs71390846-?	NR	2E-11				NR [9705931] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	16q24.1	NR	rs71390846-?		3E-8		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [2374420] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.1	LOC101928614	rs71390846-G	0.814507	6E-59		0.0388138	[0.034-0.044] unit increase	NR [13737936] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.1		rs71390846-?	NR	2E-70				NR [~ 8900000] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs71390846-?	NR	2E-71		0.0450765	[0.04-0.05] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16q24.1	FOXL1	rs71390846-C	0.188269	1E-9		0.0613	[0.042-0.081] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	16q24.1	FOXL1	rs71390846-C	0.188269	2E-11		0.0595	[0.042-0.077] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	16q24.1	NR	rs71390846-C	0.1883	7E-10	(European)	0.0498	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	16q24.1	NR	rs71390846-C	0.1836	1E-10		0.0484	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q24.1	LOC101928614	rs71390846-G	0.810139	1E-8	(men)	0.0365296	[0.024-0.049] unit increase	NR [17166351] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q24.1	LOC101928614	rs71390846-G	0.809582	4E-20		0.0390947	[0.031-0.048] unit increase	NR [17166351] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	16q24.1	LOC101928614	rs71390846-G	0.809096	5E-14	(women)	0.0424949	[0.031-0.054] unit increase	NR [17166351] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	16q24.1	FOXL1	rs71390846-?	NR	2E-6	(FNK)			Affymetrix, Illumina [5842825] (imputed)	N
1246	chr16	86714714	86714715	rs71390846	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	16q24.1	FOXL1	rs71390846-?	NR	2E-10	(hip)			Affymetrix, Illumina [5842825] (imputed)	N
1246	chr16	86718578	86718579	rs68110026	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.1		rs68110026-?	NR	2E-9		0.0229677	[0.016-0.03] unit increase	Affymetrix [20259828] (imputed)	N
1246	chr16	86727298	86727299	rs11866031	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.1	LOC101928614	rs11866031-A	0.864345	1E-10		0.0176177	[0.012-0.023] unit increase	NR [13737936] (imputed)	N
1246	chr16	86753069	86753070	rs4843180	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	16q24.1	NR	rs4843180-T	0.39	1E-6		1.25	1.14-1.36	NR [8814543] (imputed)	N
1246	chr16	86761389	86761390	rs147084429	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	16q24.1	FOXL1	rs147084429-C	0.981	5E-7		1.5873016	[1.32-1.89]	Illumina [1438399] (imputed)	N
1246	chr16	86768492	86768493	rs11117207	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	16q24.1	FOXL1	rs11117207-C	0.08	4E-7		0.128	[0.079-0.177] unit decrease	Illumina [32241096] (imputed)	N
1247	chr16	86770228	86770229	rs61124218	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.1	NR	rs61124218-C	0.04007	2E-9	(HIBADH)	0.2216	NR unit increase	Illumina [1671387] (imputed)	N
1247	chr16	86819662	86819663	rs16942134	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.1	FOXC2	rs16942134-?	NR	4E-6	(ornithine)	3.8848815	[2.23-5.54] unit increase	Affymetrix [at least 2500000] (imputed)	N
1247	chr16	86827006	86827007	rs115958457	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	16q24.1	intergenic	rs115958457-A	0.001	1E-6		34.43	[3.56-333.11]	Illumina [1556551]	N
1247	chr16	86867462	86867463	rs12596920	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.1	NR	rs12596920-?	NR	6E-46				Affymetrix [NR]	N
1248	chr16	86904134	86904135	rs13380717	28283553	Srinivasan L	2017-03-10	Arch Dis Child Fetal Neonatal Ed	Genome-wide association study of sepsis in extremely premature infants.	Sepsis in extremely premature infants	155 European ancestry cases, 190 non-European ancestry cases, 184 European ancestry controls, 222 non-European ancestry controls	NA	16q24.1	FOXC2, FOXL1	rs13380717-?	NR	1E-7				Illumina [7200000] (imputed)	N
1248	chr16	86918673	86918674	rs12051139	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	16q24.1	NR	rs12051139-C		5E-6		0.1131	[0.065-0.162] SD units increase	NR [10700000] (imputed)	N
1248	chr16	86918673	86918674	rs12051139	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	16q24.1	NR	rs12051139-C		9E-6		0.1074	[0.06-0.155] SD units increase	NR [10700000] (imputed)	N
1248	chr16	86986030	86986031	rs12711468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q24.1		rs12711468-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1248	chr16	86996283	86996284	rs72810344	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.1	NR	rs72810344-G	0.0122	2E-9	(LBP)	0.04363	NR unit increase	Illumina [1671387] (imputed)	N
1248	chr16	87000665	87000666	rs11864414	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q24.1		rs11864414-?	NR	4E-6		1.1294637	[1.07270635702006-1.18922409734466]	Illumina [up to 7827597] (imputed)	N
1249	chr16	87032854	87032855	rs4843504	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	16q24.1		rs4843504-?	NR	3E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1249	chr16	87037878	87037883	rs377161956	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	16q24.2	NR	rs377161956-C	0.03049	2E-6		0.4141	[0.24-0.59] unit decrease	Illumina [10677593] (imputed)	N
1249	chr16	87048557	87048558	rs8051603	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.2	MAP1LC3B	rs8051603-?	NR	9E-6	(gamma aminoisobutyric acid)	0.5814163	[0.32-0.84] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	16q24.2	NR	rs12445424-A	NR	9E-6				NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	16q24.2	NR	rs12445424-A	NR	2E-6				NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	16q24.2	NR	rs12445424-A	NR	9E-6				NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	16q24.2	LINC02188, LINC02181	rs12445424-A	NR	2E-6			[NR]	NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	16q24.2	LINC02188, LINC02181	rs12445424-A	0.2587	1E-6		0.1301	[0.078-0.182] unit increase	NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	16q24.2	LINC02188, LINC02181	rs12445424-A	0.2562	4E-7		0.1404	[0.086-0.194] unit increase	NR [NR] (imputed)	N
1249	chr16	87063373	87063374	rs12445424	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	16q24.2	LINC02188, LINC02181	rs12445424-A	0.2562	6E-6	(female)	0.0966	[0.055-0.138] unit increase	NR [NR] (imputed)	N
1249	chr16	87085236	87085237	rs4496150	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	16q24.2		rs4496150-A	NR	2E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1249	chr16	87085236	87085237	rs4496150	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	16q24.2	intergenic	rs4496150-C	0.75	8E-9	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1249	chr16	87100745	87100746	rs4081747	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.2	LOC440390	rs4081747-G	0.371243	6E-13		0.0138825	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1249	chr16	87100745	87100746	rs4081747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.2		rs4081747-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1249	chr16	87100745	87100746	rs4081747	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.2		rs4081747-?	NR	3E-12		0.0157667	[0.012-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1249	chr16	87108129	87108130	rs6540002	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q24.2	LOC440390, LOC101928708	rs6540002-?	NR	6E-8		0.018711612	[0.012-0.025] unit increase	Illumina [27896057] (imputed)	N
1249	chr16	87111629	87111630	rs12933233	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA		intergenic	rs12933233-?	NR	8E-6		0.7869	unit increase	Illumina [2543888] (imputed)	N
1249	chr16	87112163	87112164	rs7185669	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	16q24.2	LOC440390, LOC101928708	rs7185669-?	NR	4E-8		0.0303	[0.02-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1249	chr16	87151494	87151495	rs12596162	28051079	Warner SC	2017-01-04	Eur J Hum Genet	Genome-wide association scan of neuropathic pain symptoms post total joint replacement highlights a variant in the protein-kinase C gene.	Possible neuropathic pain in post total joint replacement surgery for osteoarthritis	109 cases, 504 controls.	NA	16q24.2	FOXL1, C16orf95	rs12596162-A	0.303	4E-6		2.05	[1.51-2.79]	Illumina [548381]	N
1250	chr16	87193083	87193084	rs8061121	25138779	Mitchell LE	2014-08-18	Hum Mol Genet	Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.	Congenital left-sided heart lesions	284 European ancestry case-parent trios, up to 93 case-parent trios	216 European ancestry case-parent trios, 8 case-parent trios	16q24.2	AC136285.1	rs8061121-?	0.11	4E-9	(EA)	2.65	[1.89-3.71]	Illumina [1712604] (imputed)	N
1250	chr16	87211962	87211963	rs12934042	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs12934042-?	NR	5E-11	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87211962	87211963	rs12934042	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12934042-?		2E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1250	chr16	87218510	87218511	rs9783786	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9783786-?	NR	5E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87224131	87224132	rs12711472	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	16q24.2		rs12711472-A	0.41	3E-13				NR [13131314] (imputed)	N
1250	chr16	87224131	87224132	rs12711472	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	16q24.2		rs12711472-A	0.41	3E-9				Affymetrix [9061022] (imputed)	N
1250	chr16	87224131	87224132	rs12711472	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q24.2		rs12711472-A	0.41	5E-324				Affymetrix [9061022] (imputed)	N
1250	chr16	87224131	87224132	rs12711472	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	16q24.2	NR	rs12711472-?		1E-28				NR [7428630] (imputed)	N
1250	chr16	87224292	87224293	rs12711473	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12711473-?		7E-14	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	16q24.2	LOC101928708	rs9937293-?		2E-27	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	16q24.2	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs9937293-?		2E-23				NR [7428630] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	16q24.2	COL3A1, COL5A2, WDR75	rs9937293-?		9E-52				NR [7428630] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q24.2	C16orf95, RP11-178L8.4, FBXO31	rs9937293-?		2E-90				NR [7428630] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9937293-?		1E-18	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87225100	87225101	rs9937293	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	16q24.2	FOXL1, C16orf95	rs9937293-A	0.59	4E-15		7.84	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1250	chr16	87225138	87225139	rs4843227	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	16q24.2	LOC101928708	rs4843227-?		1E-13	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1250	chr16	87225138	87225139	rs4843227	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	16q24.2	LOC101928708	rs4843227-?		2E-15	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
1250	chr16	87225138	87225139	rs4843227	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843227-?		1E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87225138	87225139	rs4843227	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843227-?		6E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87225138	87225139	rs4843227	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843227-?		1E-16	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	16q24.2		rs4843560-A	0.41	8E-8				NR [13131314] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q24.2		rs4843560-A	0.41	1E-159		26.92	z score increase	Affymetrix [9061022] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q24.2	NR	rs4843560-A	0.3782	1E-17				NR [9056863] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q24.2	PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFAF2, AC008498.1, SMIM15, ZSWIM6	rs4843560-?		2E-29				NR [7428630] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4843560-?	NR	1E-16	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87225142	87225143	rs4843560	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843560-?		7E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87225430	87225431	rs4843559	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	16q24.2		rs4843559-G	0.41	1E-9				NR [13131314] (imputed)	N
1250	chr16	87225430	87225431	rs4843559	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q24.2		rs4843559-G	0.41	1E-244		33.41	z score increase	Affymetrix [9061022] (imputed)	N
1250	chr16	87225430	87225431	rs4843559	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q24.2	NR	rs4843559-G	0.3781	1E-17				NR [9056863] (imputed)	N
1250	chr16	87226205	87226206	rs9933149	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9933149-?		1E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87227045	87227046	rs12920553	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12920553-?		9E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1250	chr16	87227045	87227046	rs12920553	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12920553-?		2E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
1250	chr16	87227396	87227397	rs12921170	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	16q24.2	C16orf95	rs12921170-A	NR	1E-17		0.0497	[0.038-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1250	chr16	87227396	87227397	rs12921170	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs12921170-?	NR	1E-8	(right caudate)			NR [9227495] (imputed)	N
1250	chr16	87229343	87229344	rs56023709	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	16q24.2		rs56023709-?	NR	2E-67				NR [9705931] (imputed)	N
1250	chr16	87229343	87229344	rs56023709	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	16q24.2	NR	rs56023709-A	0.3975	1E-15	(Superior Parietal)	0.005009016	[0.0038-0.0062] unit decrease	Affymetrix, Illumina [NR]	N
1250	chr16	87229343	87229344	rs56023709	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs56023709-?		4E-12	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87230536	87230537	rs11860417	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs11860417-?		8E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87230536	87230537	rs11860417	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs11860417-?		7E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87230536	87230537	rs11860417	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs11860417-?		2E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87230536	87230537	rs11860417	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs11860417-?		5E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87231159	87231160	rs4843555	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	16q24.2	CDC25A, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, C3orf84, CCDC36, RP11-3B7.1, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, TRAIP, CAMKV, MST1R, CTD-2330K9.3, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, LSMEM2, IFRD2, HYAL2, TUSC2, RASSF1, ZMYND10, NPRL2, CYB561D2, XXcos-LUCA11.5, TMEM115, CACNA2D2, CISH, MAPKAPK3, DOCK3	rs4843555-?		3E-24				NR [7428630] (imputed)	N
1250	chr16	87231159	87231160	rs4843555	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	16q24.2	NR	rs4843555-?		4E-24				NR [7428630] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs12149643-?	NR	7E-24	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		2E-15	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		5E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		2E-15	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		2E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		4E-15	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87231498	87231499	rs12149643	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12149643-?		3E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87233184	87233185	rs4843553	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	16q24.2	C16orf95	rs4843553-C	0.5593	1E-14				Affymetrix, Illumina [9900000] (imputed)	N
1250	chr16	87233184	87233185	rs4843553	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	16q24.2	C16orf95	rs4843553-C	NR	1E-15		0.0479	[0.036-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1250	chr16	87233184	87233185	rs4843553	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	16q24.2	C16orf95	rs4843553-C	0.5655	5E-16		0.048	[0.036-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1250	chr16	87233515	87233516	rs4843552	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4843552-?	NR	2E-21	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87233515	87233516	rs4843552	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843552-?		1E-17	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87233515	87233516	rs4843552	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843552-?		7E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87235866	87235867	rs4240792	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4240792-?	NR	5E-9	(left cuneus)			NR [9227495] (imputed)	N
1250	chr16	87235915	87235916	rs4240791	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4240791-?	NR	2E-12	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87235915	87235916	rs4240791	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4240791-?		3E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87235915	87235916	rs4240791	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4240791-?		2E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87236011	87236012	rs4240789	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4240789-?	NR	9E-11	(X3rd ventricle)			NR [9227495] (imputed)	N
1250	chr16	87236011	87236012	rs4240789	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4240789-?	NR	2E-14	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87236330	87236331	rs4240787	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals			C16orf95	rs4240787-A	0.3819	8E-10		0.0518985	[0.035-0.068] unit increase	Affymetrix [8165723] (imputed)	N
1250	chr16	87236382	87236383	rs4843550	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4843550-?	NR	3E-15	(X3rd ventricle)			NR [9227495] (imputed)	N
1250	chr16	87236382	87236383	rs4843550	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843550-?		4E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	16q24.2	C16orf95	rs12928520-T	0.4252	4E-11		0.0431	[0.03-0.056] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	16q24.2	C16orf95	rs12928520-T		1E-13		7.312	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs12928520-?	NR	6E-15	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs12928520-?	NR	3E-12	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12928520-?		2E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12928520-?		1E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12928520-?		2E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87237567	87237568	rs12928520	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12928520-?		9E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87237862	87237863	rs4843549	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843549-?		9E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87237862	87237863	rs4843549	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843549-?		3E-15	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87237862	87237863	rs4843549	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843549-?		6E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87238609	87238610	rs55807115	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs55807115-?	NR	2E-16	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87238609	87238610	rs55807115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs55807115-?		2E-11	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87238609	87238610	rs55807115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs55807115-?		5E-12	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87238609	87238610	rs55807115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs55807115-?		9E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87238609	87238610	rs55807115	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs55807115-?		5E-12	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87240147	87240148	rs4843547	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843547-?		6E-11	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87240710	87240711	rs60586550	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs60586550-?	NR	3E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87240710	87240711	rs60586550	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs60586550-?	NR	2E-9	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87244357	87244357	rs749571546	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs749571546-?	NR	3E-8	(left cuneus)			NR [9227495] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs1108048-?	NR	9E-11	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		5E-15	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		3E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		2E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		9E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87245730	87245731	rs1108048	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1108048-?		8E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs35427507-?	NR	1E-11	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs35427507-?	NR	1E-11	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs35427507-?		4E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs35427507-?		4E-9	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs35427507-?		5E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87247744	87247745	rs35427507	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs35427507-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87249304	87249305	rs10863183	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs10863183-?	NR	2E-9	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87249304	87249305	rs10863183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs10863183-?		7E-14	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87249304	87249305	rs10863183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs10863183-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87249304	87249305	rs10863183	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs10863183-?		3E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87250018	87250019	rs1110339	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs1110339-?	NR	7E-15	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87250018	87250019	rs1110339	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs1110339-?		3E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87250518	87250519	rs28655023	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs28655023-?	NR	1E-12	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs62056161-?	NR	3E-11	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs62056161-?	NR	2E-8	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056161-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056161-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056161-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056161-?		7E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87254372	87254373	rs62056161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056161-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87255309	87255310	rs62056163	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	16q24.2	THADA, ZFP36L2, PLEKHH2	rs62056163-?		1E-8				NR [7428630] (imputed)	N
1250	chr16	87257819	87257820	rs12919133	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs12919133-?		8E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87258928	87258929	rs62056165	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs62056165-?	NR	1E-10	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87260746	87260747	rs35583073	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs35583073-?		4E-10	(Posterior corona radiata )			NR [8955960] (imputed)	N
1250	chr16	87261182	87261183	rs9940970	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9940970-?	NR	4E-14	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87261182	87261183	rs9940970	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9940970-?	NR	4E-13	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87261182	87261183	rs9940970	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940970-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87261182	87261183	rs9940970	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940970-?		4E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9940975-?	NR	7E-11	(X3rd ventricle)			NR [9227495] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		9E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		2E-13	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		1E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		3E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		8E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87261198	87261199	rs9940975	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	16q24.2	NR	rs9940975-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1250	chr16	87261643	87261644	rs4843576	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs4843576-?	NR	2E-10	(X4th ventricle)			NR [9227495] (imputed)	N
1250	chr16	87262530	87262531	rs4843577	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	16q24.2	intergenic	rs4843577-C	0.104255	5E-6		1.08952	[0.64-1.54] unit increase	NR [7263501] (imputed)	N
1250	chr16	87264320	87264321	rs62056167	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs62056167-?	NR	3E-10	(left lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87264320	87264321	rs62056167	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056167-?		5E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
1250	chr16	87264320	87264321	rs62056167	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056167-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87264320	87264321	rs62056167	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056167-?		2E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87264533	87264534	rs4843231	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs4843231-?		9E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
1250	chr16	87266244	87266245	rs9940109	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9940109-?	NR	1E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87272968	87272969	rs8061521	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs8061521-?	NR	2E-9	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87272969	87272970	rs9931938	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs9931938-?	NR	3E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
1250	chr16	87273377	87273377	rs144109569	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs144109569-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87273377	87273377	rs144109569	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs144109569-?		7E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87283438	87283439	rs62056198	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs62056198-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
1250	chr16	87287522	87287523	rs17770675	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.2	NR	rs17770675-?		1E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
1251	chr16	87300959	87300960	rs17770752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.2		rs17770752-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1251	chr16	87302298	87302299	rs9936995	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	16q24.2		rs9936995-T	NR	4E-8		1.1466767	[1.09191411924734-1.20418571944125]	Illumina [up to 7827597] (imputed)	N
1251	chr16	87338823	87338824	rs74038417	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	16q24.2	C16orf95	rs74038417-A	NR	9E-7		0.23496044	[0.14-0.33] unit increase	Illumina [> 6200000] (imputed)	N
1251	chr16	87352180	87352181	rs874441	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs874441-?	NR	3E-8	(X3rd ventricle)			NR [9227495] (imputed)	N
1251	chr16	87361802	87361803	rs2278271	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs2278271-?	NR	4E-8	(right paracentral)			NR [9227495] (imputed)	N
1251	chr16	87364649	87364650	rs1062746	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	16q24.2	FBX031	rs1062746-?		2E-6	(Hispanic)	15.6	[NR]	Illumina [936149]	N
1251	chr16	87414634	87414635	rs56059702	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	16q24.2	FBXO31	rs56059702-T	0.443348	4E-11		6.59	z score decrease	NR [10847151] (imputed)	N
1252	chr16	87426306	87426307	rs76082995	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	16q24.2	MAP1LC3B	rs76082995-T	NR	8E-9		0.010157	[0.0067-0.0136] unit increase	Affymetrix [18485882] (imputed)	N
1252	chr16	87426306	87426307	rs76082995	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	16q24.2	FBXO31	rs76082995-T	0.437994	6E-9		5.82	z score decrease	NR [10847151] (imputed)	N
1252	chr16	87436719	87436720	rs1054521	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	16q24.2	NR	rs1054521-?	NR	9E-7		0.218919	[0.13-0.31] unit increase	NR [13958389] (imputed)	N
1252	chr16	87436719	87436720	rs1054521	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	16q24.2	MAP1LC3B, ZCCHC14, JPH3	rs1054521-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
1252	chr16	87440894	87440895	rs1050863	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	16q24.2	intergenic	rs1050863-?	NR	3E-12		0.00812686	[0.0059-0.0104] unit increase	Affymetrix [NR] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16q24.2		rs1050847-C	0.426	1E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [up to 90000000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q24.2	NR	rs1050847-T	0.559	9E-12		0.00745744	[0.0053-0.0096] unit decrease	NR [9732723] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q24.2	NR	rs1050847-T	0.559	7E-9		0.014830017	[0.0098-0.0199] unit decrease	NR [~ 10000000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	16q24.2		rs1050847-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q24.2		rs1050847-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q24.2		rs1050847-T	0.5626	9E-11		0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q24.2	Intergenic	rs1050847-T	0.5626	1E-12	(MTAG)	0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q24.2	Intergenic	rs1050847-T	0.5751	1E-10	(MTAG)	0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1252	chr16	87443733	87443734	rs1050847	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	16q24.2	NR	rs1050847-?	NR	7E-6		4.489	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1252	chr16	87444693	87444694	rs8045843	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	16q24.2	ZCCHC14	rs8045843-C	0.2356	3E-14		0.020293398	[0.014-0.026] unit increase	NR [9417325] (imputed)	N
1252	chr16	87444693	87444694	rs8045843	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	16q24.2	NR	rs8045843-C	NR	9E-9		0.01609	NR unit increase	NR [7259579]	N
1252	chr16	87445362	87445363	rs1050846	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	16q24.2	FBXO31, MAP1LC3B, ZCCHC14	rs1050846-A	0.44187	1E-6		4.87	z score decrease	Illumina [18485882] (imputed)	N
1252	chr16	87445838	87445839	rs3748400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16q24.2		rs3748400-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1252	chr16	87445838	87445839	rs3748400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q24.2	Intergenic	rs3748400-T	0.7615	4E-10	(MTAG)	0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1252	chr16	87446052	87446053	rs2042395	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	16q24.2	NR	rs2042395-A	0.763116369613439	4E-8		0.0059135566	[0.0038-0.008] unit decrease	NR [NR]	N
1252	chr16	87446052	87446053	rs2042395	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16q24.2	NR	rs2042395-A	NR	6E-9		5.803	z score decrease	Affymetrix [10847151] (imputed)	N
1252	chr16	87461968	87461969	rs9646303	22472876	Sullivan PF	2012-04-03	Mol Psychiatry	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	16q24.2	MAP1LC3B, ZCCHC14, FBXO31	rs9646303-?	NR	5E-6				Affymetrix, Illumina, Perlegen [~ 1200000] (imputed)	N
1252	chr16	87489697	87489698	rs4843613	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	16q24.2	ZCCHC14	rs4843613-T	0.83	5E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
1252	chr16	87489890	87489891	rs7194676	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q24.2	NR	rs7194676-C	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1252	chr16	87492448	87492449	rs8050237	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	16q24.2	FBXO31	rs8050237-T	0.203441	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1252	chr16	87511560	87511561	rs9936170	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	16q24.2	NR	rs9936170-G	NR	5E-9		0.01787	[0.012-0.024] unit increase	Affymetrix [10847151] (imputed)	N
1252	chr16	87537310	87537311	rs137888851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q24.2		rs137888851-T	0.156043	1E-11		0.020425	[0.015-0.026] unit decrease	Illumina [13479295] (imputed)	N
1252	chr16	87537310	87537311	rs137888851	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q24.2	LOC101928737	rs137888851-?	NR	5E-12		0.029396145	[0.021-0.038] unit decrease	Illumina [27896057] (imputed)	N
1252	chr16	87540939	87540940	rs118105689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q24.2		rs118105689-G	NR	2E-8		0.0368	[0.024-0.05] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1252	chr16	87540939	87540940	rs118105689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	16q24.2		rs118105689-G	0.05379	2E-8		0.0368309	[0.024-0.05] unit decrease	Illumina [13479924] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	7,338 European, African American, South Asian and Hispanic ancestry cases, 225,258 European, African American, South Asian and Hispanic ancestry controls	NA	16q24.2	ZCCHC14	rs12445022-A	0.34	9E-8		1.12	[1.08-1.16]	Illumina [6922875] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	6,030 European ancestry cases, 248,929 European ancestry controls	NA	16q24.2	ZCCHC14	rs12445022-A	0.34	3E-8		1.13	[1.09-1.17]	Illumina [6932927] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	16q24.2	NR	rs12445022-A	0.3219	2E-7		5.203	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	16q24.2	NR	rs12445022-A	0.322	4E-9		5.874	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	16q24.2	Intergenic	rs12445022-?	NR	3E-6		1.06	[1.04-1.08]	Affymetrix, Illumina [39235000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	16q24.2	ZCCHC14	rs12445022-?	NR	1E-10				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	16q24.2	ZCCHC14	rs12445022-?	NR	1E-7				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	16q24.2	ZCCHC14	rs12445022-?	NR	3E-9				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls	NA	16q24.2	ZCCHC14	rs12445022-?	NR	9E-8				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	16q24.2	ZCCHC14	rs12445022-?	NR	1E-10				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	16q24.2	JPH3, LOC101928737	rs12445022-?	NR	2E-7				NR [~ 8000000] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Small vessel stroke	2,275 European ancestry cases, 12,285 European ancestry controls	1,928 European ancestry cases, 38,443 European ancestry controls	16q24.2	JPH3, ZCCHC14	rs12445022-A	0.3378	3E-9		1.16	1.10-1.21	Affymetrix, Illumina [NR] (imputed)	N
1253	chr16	87575331	87575332	rs12445022	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	16q24.2	LOC101928737, JPH3	rs12445022-?		2E-6	(Dominant)	1.5	[1.30-1.70]	Illumina [5600610] (imputed)	N
1253	chr16	87578038	87578039	rs8052831	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	16q24.2	ZCCHC14, JPH3	rs8052831-?	NR	2E-9		1.049	[1.033-1.066]	Illumina [13763073] (imputed)	N
1253	chr16	87579869	87579870	rs4081947	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	16q24.2	ZCCHC14	rs4081947-G	0.34	3E-9		1.03	[1.00-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1253	chr16	87604760	87604761	rs862225	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	16q24.2	JPH3	rs862225-A		3E-6		0.04879	[NR] unit increase	Illumina [635970]	N
1253	chr16	87615820	87615821	rs73251207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	16q24.2	Intergenic	rs73251207-G	0.951	1E-6	(AA)	0.07	NR unit increase	Illumina [NR] (imputed)	N
1253	chr16	87642740	87642741	rs146846403	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	16q24.2	NR	rs146846403-?	NR	7E-7		0.2789	[0.17-0.39] unit increase	Illumina [~ 7800000] (imputed)	N
1253	chr16	87668471	87668472	rs7206657	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	16q24.2		rs7206657-C	0.33	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1253	chr16	87671418	87671419	rs864839	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		16q24.2	NR	rs864839-T	0.719223	2E-6		1.08264	[1.04963-1.11669]	Affymetrix [16499239] (imputed)	N
1253	chr16	87671418	87671419	rs864839	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	16q24.2	ZCCHC14, KLHDC4	rs864839-G	0.29	8E-7		0.35	[0.21-0.49] unit decrease	Illumina [7938386] (imputed)	N
1253	chr16	87674430	87674431	rs79613350	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q24.2	JPH3	rs79613350-T	0.061	3E-7		0.0734	[0.045-0.102] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1253	chr16	87677762	87677763	rs76960347	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	16q24.2		rs76960347-A	0.0108403	6E-9		0.103114	[0.068-0.138] unit increase	Illumina [7980478] (imputed)	N
1253	chr16	87677762	87677763	rs76960347	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	16q24.2		rs76960347-A	0.0108403	2E-9		0.130091	[0.087-0.173] unit increase	Illumina [7980478] (imputed)	N
1253	chr16	87678440	87678441	rs8051448	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	16q24.2	JPH3	rs8051448-C	0.1689	8E-6		1.14	[1.2-7.98]	Affymetrix [up to 27494467] (imputed)	N
1253	chr16	87678575	87678576	rs34975147	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	16q24.2	NR	rs34975147-?	NR	5E-6				NR [up to 8466825] (imputed)	N
1254	chr16	87687267	87687268	rs117760708	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		16q24.2	JPH3	rs117760708-T	0.004	3E-6	(liability model)	0.73	[0.42-1.04] unit increase	NR [19725427] (imputed)	N
1254	chr16	87691163	87691163	rs200680880	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	16q24.2	NR	rs200680880-?	NR	6E-6		0.1007	[0.057-0.144] unit decrease	Illumina [at least 560000] (imputed)	N
1254	chr16	87694040	87694041	rs67163887	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	16q24.2	JPH3	rs67163887-G	0.917	4E-6	(AA)	0.146	NR unit increase	Illumina [NR] (imputed)	N
1254	chr16	87695531	87695532	rs144930872	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	16q24.2		rs144930872-?	NR	4E-6		0.54	[0.31-0.77] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1254	chr16	87713599	87713600	rs145661344	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		JPH3	rs145661344-?	NR	4E-11		3.2966	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1254	chr16	87724640	87724641	rs117037877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs117037877-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1254	chr16	87797565	87797566	rs8061677	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	16q24.2	FOXC2, FOXL1	rs8061677-C	0.205	9E-11		1.29	NR	Illumina [at least 870261] (imputed)	N
1255	chr16	87825287	87825288	rs565250829	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs565250829-A	0.002033	4E-10		0.76	[0.52-1] unit increase	NR [11842647] (imputed)	N
1255	chr16	87828090	87828091	rs73249112	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	16q24.2	NR	rs73249112-T	0.04128	2E-6		0.3556	[0.21-0.5] unit decrease	Illumina [10677593] (imputed)	N
1255	chr16	87856423	87856424	rs4384608	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q24.2	NR	rs4384608-C	0.4076	4E-10		0.0266	[0.018-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1255	chr16	87856437	87856438	rs76069656	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		16q24.2	intergenic	rs76069656-?	NR	5E-7	(AA)	0.103	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1255	chr16	87861454	87861455	rs144974092	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.2	NR	rs144974092-G	0.01742	2E-8	(IGHM)	0.1979	NR unit increase	Illumina [1671387] (imputed)	N
1255	chr16	87867871	87867872	rs747578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.2	SLC7A5	rs747578-A	0.283755	2E-11		0.016511692	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87869312	87869313	rs55777228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.2	SLC7A5	rs55777228-C	0.28876	4E-12		0.017249888	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87869312	87869313	rs55777228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs55777228-C	0.387647	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
1255	chr16	87869312	87869313	rs55777228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs55777228-C	0.384185	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
1255	chr16	87874139	87874140	rs11865049	30480742	Miki A	2018-11-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study to Identify a New Susceptibility Locus for Central Serous Chorioretinopathy in the Japanese Population.	Chronic central serous retinopathy	137 Japanese ancestry cases, 1,174 Japanese ancestry controls	183 Japanese ancestry cases, 2,071 Japanese ancestry controls	16q24.2	NR	rs11865049-A	NR	1E-8		2.1	[1.62-2.67]	Illumina [548653]	N
1255	chr16	87874181	87874182	rs12931876	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.2	CA5A	rs12931876-?	NR	2E-6	(kynurenine)	0.23048638	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1255	chr16	87878569	87878570	rs8050771	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.2	SLC7A5	rs8050771-G	0.680591	5E-22	(kynurenine)	0.231	[0.18-0.28] unit decrease	Illumina [13039987] (imputed)	N
1255	chr16	87878821	87878822	rs8051149	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	16q24.2	SLC7A5	rs8051149-A	0.21	9E-26	(kynurenine)	0.026	[0.02-0.032] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	16q24.2		rs68149176-C	0.764852	1E-8		0.0278847	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.2	SLC7A5	rs68149176-T	0.235135	5E-63		0.04447354	[0.039-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.2	SLC7A5	rs68149176-T	0.235084	4E-60		0.0391647	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.2	SLC7A5	rs68149176-T	0.235095	9E-52		0.03904947	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	16q24.2	NR	rs68149176-T	0.234622	3E-65		0.038337	[0.034-0.043] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.2		rs68149176-?	NR	3E-48				NR [~ 8900000] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.2	SLC7A5	rs68149176-T	0.2361	4E-20		0.03822953	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr16	87886489	87886490	rs68149176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q24.2	SLC7A5	rs68149176-T	0.2362	8E-17		0.03479208	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr16	87886544	87886545	rs66480687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	16q24.2		rs66480687-T	NR	2E-35		0.0286	[0.024-0.033] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1255	chr16	87886544	87886545	rs66480687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16q24.2	NR	rs66480687-C	0.7651	2E-10		0.014973	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1255	chr16	87886544	87886545	rs66480687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs66480687-T	0.3138	1E-71				Affymetrix, Illumina [24246363] (imputed)	N
1255	chr16	87886544	87886545	rs66480687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs66480687-T	0.31614	3E-59				Affymetrix, Illumina [20825802] (imputed)	N
1255	chr16	87886544	87886545	rs66480687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	16q24.2	NR	rs66480687-T	0.235762	1E-55		0.035738	[0.031-0.04] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1255	chr16	87886725	87886726	rs67971539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	16q24.2		rs67971539-A	NR	4E-43		0.0317	[0.027-0.036] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1255	chr16	87886725	87886726	rs67971539	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16q24.2		rs67971539-T	0.764	9E-39		0.17	[-0.19--0.14] % decrease	Affymetrix [NR] (imputed)	N
1255	chr16	87886725	87886726	rs67971539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.2	SLC7A5	rs67971539-A	0.23519	2E-71		0.0474247	[0.042-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87888118	87888119	rs7200918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	SLC7A5	rs7200918-C	0.330633	2E-16		0.019955358	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87888118	87888119	rs7200918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2	SLC7A5	rs7200918-C	0.330594	4E-19		0.021591755	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87888118	87888119	rs7200918	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs7200918-C	0.442717	7E-27				Affymetrix, Illumina [24588908] (imputed)	N
1255	chr16	87889154	87889155	rs4240801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16q24.2	NR	rs4240801-T	0.324875	5E-10		0.013345	[0.0091-0.0175] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1255	chr16	87889159	87889160	rs4240802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q24.2	NR	rs4240802-C	0.325489	1E-27		0.022461	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1255	chr16	87899584	87899585	rs61584523	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	16q24.2	NR	rs61584523-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1255	chr16	87903262	87903263	rs4843724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.2	SLC7A5	rs4843724-A	0.241848	3E-9		0.015649598	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1255	chr16	87906858	87906859	rs111408305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs111408305-C	0.209974	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
1255	chr16	87908304	87908305	rs9673280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.2		rs9673280-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1255	chr16	87922035	87922036	rs8056952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q24.2	NR	rs8056952-G	0.347252	2E-11		0.015021	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1255	chr16	87922035	87922036	rs8056952	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	16q24.2	CA5A	rs8056952-G	0.3504	2E-10		0.02438734	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr16	87922035	87922036	rs8056952	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	16q24.2	CA5A	rs8056952-G	0.3504	1E-12		0.02698108	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr16	87922035	87922036	rs8056952	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	16q24.2	CA5A	rs8056952-G	0.3505	9E-13		0.02744918	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1255	chr16	87924850	87924851	rs182303497	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs182303497-T	0.00388	3E-12		0.59	[0.42-0.76] unit increase	NR [11842647] (imputed)	N
1256	chr16	87950338	87950339	rs8045014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	16q24.2	NR	rs8045014-T	NR	3E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1256	chr16	87956094	87956095	rs567092099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs567092099-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1256	chr16	87958670	87958671	rs149322277	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs149322277-?	NR	9E-7	(AA)	13.345354	[8.1-18.6] unit decrease	Affymetrix [at least 600000] (imputed)	N
1256	chr16	87958670	87958671	rs149322277	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs149322277-?	NR	1E-6		13.281	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	87963247	87963248	rs139731147	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs139731147-?	NR	5E-6		11.566	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	87983492	87983493	rs138575291	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs138575291-?	NR	9E-6		12.155	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	87991050	87991051	rs4843747	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	16q24.2	NR	rs4843747-?	NR	2E-7		0.39	[0.24-0.54] years increase	Illumina [315418]	N
1256	chr16	87991360	87991361	rs6540122	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		16q24.2	NR	rs6540122-T	0.16	9E-6		1.34	[1.18-1.53]	Illumina [~ 8000000] (imputed)	N
1256	chr16	87991583	87991584	rs6540123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	16q24.2	NR	rs6540123-G	NR	9E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1256	chr16	87993888	87993889	rs6540125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	16q24.2		rs6540125-G	NR	2E-8		0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1256	chr16	87993888	87993889	rs6540125	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	16q24.2	BANP	rs6540125-T	0.3411	1E-10		0.2042	[0.14-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1256	chr16	88001367	88001368	rs114700275	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs114700275-?	NR	8E-6		10.825	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	88003483	88003484	rs4843756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	16q24.2		rs4843756-T	NR	1E-9		0.0142	[0.0097-0.0187] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1256	chr16	88004091	88004092	rs12926107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	16q24.2		rs12926107-G	NR	8E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1256	chr16	88004091	88004092	rs12926107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	16q24.2	BANP	rs12926107-A	0.545097	1E-10		0.0128688	[0.0089-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1256	chr16	88004091	88004092	rs12926107	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	16q24.2	NR	rs12926107-A	0.541549	7E-16		0.0243727	[0.018-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1256	chr16	88005588	88005589	rs114908471	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs114908471-?	NR	8E-6		10.825	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	88006652	88006653	rs116213227	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	16q24.2	NR	rs116213227-?	NR	8E-6		11.008	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1256	chr16	88017250	88017251	rs28690689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	16q24.2		rs28690689-C	0.230704	5E-8		0.0240826	[0.015-0.033] unit increase	NR [11722792] (imputed)	N
1256	chr16	88027770	88027771	rs4843771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	16q24.2		rs4843771-G	0.317012	1E-8		0.0233188	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1256	chr16	88027770	88027771	rs4843771	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	16q24.2		rs4843771-G	0.317023	3E-8		0.0239757	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1256	chr16	88029684	88029685	rs11640494	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	16q24.2	BANP	rs11640494-G	0.543344	5E-16		0.0154267	[0.012-0.019] unit increase	Affymetrix [NR] (imputed)	N
1256	chr16	88032188	88032189	rs141920044	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	16q24.2		rs141920044-C	0.649241	9E-9		0.0224018	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1256	chr16	88039446	88039447	rs11641548	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	16q24.2	BANP	rs11641548-A	0.560412	3E-11		0.0131611	[0.0093-0.017] unit increase	Affymetrix [NR] (imputed)	N
1256	chr16	88060602	88060603	rs111717711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.2	BANP	rs111717711-A	0.0517919999999999	3E-9		0.030385863	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1256	chr16	88068078	88068078	rs56731455	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	16q24.2	NR	rs56731455-AT	0.566926	9E-9		0.015113	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q24.2	NR	rs11641834-C	0.569335	1E-36		0.0103728	[0.0087-0.012] unit increase	Affymetrix [16582909] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16q24.2	NR	rs11641834-C	0.570554	3E-17		0.0103511	[0.0079-0.0128] unit increase	Affymetrix [16585854] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q24.2	NR	rs11641834-C	0.568022	9E-22		0.0104909	[0.0082-0.0128] unit increase	Affymetrix [16582621] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q24.2	NR	rs11641834-C	0.569335	8E-36		0.0114677	[0.0096-0.0133] unit increase	Affymetrix [16582965] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16q24.2	NR	rs11641834-C	0.570554	1E-16		0.0112054	[0.0084-0.014] unit increase	Affymetrix [16585866] (imputed)	N
1256	chr16	88070572	88070573	rs11641834	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q24.2	NR	rs11641834-C	0.568022	7E-23		0.0115622	[0.0091-0.014] unit increase	Affymetrix [16582614] (imputed)	N
1256	chr16	88073834	88073835	rs12923739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.2		rs12923739-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1256	chr16	88076673	88076674	rs11117352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.2	CA5A	rs11117352-?	NR	6E-6	(5-hydroxyindoleacetic acid)	0.41959736	[0.24-0.6] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1256	chr16	88076723	88076724	rs9927732	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	16q24.2	NR	rs9927732-?	NR	3E-7				Illumina [8270200] (imputed)	N
1257	chr16	88093161	88093162	rs12931014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	BANP	rs12931014-G	0.418903	9E-10		0.014090358	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr16	88093161	88093162	rs12931014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2	BANP	rs12931014-G	0.418906	1E-11		0.01562414	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr16	88099915	88099916	rs144169197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs144169197-T	0.00964	3E-11		0.35	[0.25-0.45] unit increase	NR [11842647] (imputed)	N
1257	chr16	88101698	88101699	rs185736886	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs185736886-C	0.003259	9E-18		0.81	[0.63-0.99] unit increase	NR [11842647] (imputed)	N
1257	chr16	88120230	88120231	rs11117363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q24.2		rs11117363-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1257	chr16	88132198	88132199	rs11117364	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q24.2	NR	rs11117364-G	0.6655	8E-9		0.029	[0.019-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1257	chr16	88137976	88137977	rs60615129	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	16q24.2	NR	rs60615129-C	NR	2E-13		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1257	chr16	88141762	88141763	rs117173527	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	16q24.2		rs117173527-G	0.027767	6E-7		1.5482272	NR	Affymetrix [7846216] (imputed)	N
1257	chr16	88195226	88195227	rs184750324	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.2		rs184750324-G	0.002009	3E-9		0.31	[0.21-0.41] unit decrease	NR [11842647] (imputed)	N
1257	chr16	88203422	88203423	rs117221910	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	16q24.2	RP11-863P13.1	rs117221910-A	0.0519	2E-6		0.113	[0.066-0.16] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1257	chr16	88211007	88211008	rs6540191	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q24.2		rs6540191-C	0.19	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1258	chr16	88230121	88230122	rs62047010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs62047010-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1258	chr16	88245732	88245733	rs140552175	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	16q24.2	LOC101928880	rs140552175-?	NR	9E-6				Illumina [2668805]	N
1258	chr16	88246423	88246424	rs112178605	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs112178605-A	0.948727	1E-8		0.120779	[0.079-0.163] increase	Affymetrix [11014269] (imputed)	N
1258	chr16	88255712	88255713	rs9928981	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9928981-T	0.0987917	3E-8		0.0802982	[0.05-0.111] increase	Affymetrix [11014269] (imputed)	N
1258	chr16	88260882	88260883	rs9930276	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		16q24.2	intergenic	rs9930276-A	0.529487	5E-6		0.414219	[0.24-0.59] unit decrease	Illumina [640625] (imputed)	N
1258	chr16	88262112	88262113	rs56192581	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	16q24.2	NR	rs56192581-G		6E-6		0.3425	[0.19-0.49] SD units decrease	NR [10700000] (imputed)	N
1258	chr16	88284066	88284067	rs142702217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs142702217-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1258	chr16	88287843	88287844	rs11646432	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11646432-T	0.723239	9E-16		0.0798362	[0.06-0.1] increase	Affymetrix [11014269] (imputed)	N
1258	chr16	88292160	88292161	rs11860207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q24.2		rs11860207-G	0.36	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
1258	chr16	88292160	88292161	rs11860207	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q24.2	NR	rs11860207-G	0.3827	9E-12				NR [9056863] (imputed)	N
1258	chr16	88296824	88296825	rs113896694	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.2	LOC101928880	rs113896694-C	0.887604	8E-11		0.0189219	[0.013-0.025] unit increase	NR [13737936] (imputed)	N
1258	chr16	88298123	88298124	rs12447690	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	16q24.2	ZNF469, BANP	rs12447690-C	0.36	2E-8		4.86	[NR] unit decrease (initial cohort)	Illumina [576798] (imputed)	N
1258	chr16	88298123	88298124	rs12447690	20719862	Vitart V	2010-08-18	Hum Mol Genet	New loci associated with central cornea thickness include COL5A1, AKAP13 and AVGR8.	Central corneal thickness	1,445 European ancestry individuals	5,882 European ancestry individuals	16q24.2	BANP, ZNF469	rs12447690-G	0.38	6E-22		0.16	[0.13-0.19] unit decrease	Illumina [~ 2000000] (imputed)	N
1258	chr16	88298123	88298124	rs12447690	20485516	Lu Y	2010-05-13	PLoS Genet	Common genetic variants near the Brittle Cornea Syndrome locus ZNF469 influence the blinding disease risk factor central corneal thickness.	Central corneal thickness	3,473 European ancestry twins in 1,905 families, 301 European ancestry thin CCT cases, 301 European ancestry thick CCT controls	NA	16q24.2	ZNF469	rs12447690-C	NR	9E-11		0.16	[0.10-0.22] unit increase	Illumina [~ 2400000]	N
1258	chr16	88298794	88298795	rs112898929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.2	AC138512.1	rs112898929-A	0.0797	1E-16		0.0296	[0.023-0.037] unit decrease	Affymetrix [18391927] (imputed)	N
1258	chr16	88298794	88298795	rs112898929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.2		rs112898929-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1258	chr16	88298794	88298795	rs112898929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.2		rs112898929-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1258	chr16	88298794	88298795	rs112898929	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.2		rs112898929-?	NR	3E-12		0.0256215	[0.018-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1258	chr16	88306423	88306424	rs373972610	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs373972610-A	0.951459	4E-9		0.121793	[0.079-0.165] increase	Affymetrix [11014269] (imputed)	N
1258	chr16	88314451	88314452	rs11117401	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	16q24.2	BANP, ZNF469	rs11117401-A	NR	4E-20		0.236	[0.19-0.29] unit increase	Affymetrix [7701190] (imputed)	N
1258	chr16	88314451	88314452	rs11117401	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	16q24.2	ZNF469	rs11117401-G	0.354	9E-58		6.537	[5.74-7.34] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1258	chr16	88317284	88317285	rs9783782	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	16q24.2	ZNF469	rs9783782-G	0.311732	3E-8		0.016125	[0.01-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1258	chr16	88320098	88320099	rs193241090	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs193241090-T	8.305E-4	7E-15		1.44	[1.08-1.8] unit increase	NR [11842647] (imputed)	N
1258	chr16	88321026	88321027	rs76520574	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.2	AC138512.1	rs76520574-T	0.0413	4E-22		0.047	[0.037-0.057] unit decrease	Affymetrix [18391927] (imputed)	N
1258	chr16	88321435	88321436	rs6540223	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	16q24.2	ZNF469	rs6540223-T	0.6751	7E-8		0.0631	[0.04-0.086] unit increase	Illumina [2500000] (imputed)	N
1258	chr16	88323598	88323599	rs28425635	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	16q24.2		rs28425635-A	0.659312	1E-69		0.162733	[0.14-0.18] increase	Affymetrix [11014269] (imputed)	N
1258	chr16	88323598	88323599	rs28425635	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	16q24.2	ZNF469	rs28425635-A	0.66	2E-109		0.168	[0.15-0.18] unit increase	Affymetrix [12000000] (imputed)	N
1258	chr16	88324820	88324821	rs35193497	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	16q24.2	ZNF469	rs35193497-?	NR	7E-6		0.09	unit decrease	Illumina [NR]	N
1258	chr16	88324820	88324821	rs35193497	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	16q24.2	ZNF469	rs35193497-?	NR	5E-13		0.146	[0.19-0.11] unit decrease	Illumina [NR]	N
1258	chr16	88324820	88324821	rs35193497	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	16q24.2	ZNF469	rs35193497-T	0.34	8E-60		5.8	[5.11-6.49] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1258	chr16	88325559	88325560	rs28411862	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	16q24.2	NR	rs28411862-?	NR	4E-8	(right middle temporal)			NR [9227495] (imputed)	N
1258	chr16	88328927	88328928	rs28687756	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	16q24.2	ZNF469	rs28687756-T	0.53	8E-38		7.507	[6.36-8.65] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1258	chr16	88328927	88328928	rs28687756	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q24.2	LINC02182, ZNF469	rs28687756-T	0.3392	7E-26		0.155	[0.13-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1258	chr16	88329201	88329202	rs28526212	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	16q24.2	ZNF469	rs28526212-G	0.353	2E-92		0.14	[0.13-0.15] unit decrease	Affymetrix [12000000] (imputed)	N
1258	chr16	88329201	88329202	rs28526212	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	16q24.2	ZNF469	rs28526212-?	NA	1E-80		5.35	[4.8-5.9] unit decrease	Affymetrix [5541230] (imputed)	N
1258	chr16	88330348	88330349	rs12719932	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	16q24.2	ZNF469	rs12719932-A	0.363	5E-11		0.17	[0.12-0.22] mm Hg decrease	Affymetrix [NR] (imputed)	N
1258	chr16	88330512	88330513	rs12448211	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal hysteresis	6,645 individuals	2,384 European ancestry individuals	16q24.2	ZNF469	rs12448211-G	0.363	2E-8		0.14	[0.09-0.19] mm Hg decrease	Affymetrix [NR] (imputed)	N
1258	chr16	88330512	88330513	rs12448211	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	16q24.2	ZNF469	rs12448211-A	0.65	4E-8		4.51	[NR] unit increase	Illumina [576798] (imputed)	N
1258	chr16	88331308	88331309	rs12926024	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	16q24.2	BANP, ZNF469	rs12926024-?	NR	4E-12		0.11	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1258	chr16	88331639	88331640	rs9938149	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q24.2	LINC02182, ZNF469	rs9938149-C	0.37	4E-24		0.143	[0.11-0.17] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1258	chr16	88331639	88331640	rs9938149	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	16q24.2	BANP, ZNF469	rs9938149-A	0.62	2E-49		0.17	[0.15-0.19] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
1258	chr16	88331639	88331640	rs9938149	22814818	Hoehn R	2012-07-20	Hum Genet	Population-based meta-analysis in Caucasians confirms association with COL5A1 and ZNF469 but not COL8A2 with central corneal thickness.	Central corneal thickness	3,931 European ancestry individuals	1,418 European ancestry individuals	16q24.2	ZNF469	rs9938149-A	0.62	1E-12		0.16	[0.12-0.20] SD increase	Affymetrix [NR] (imputed)	N
1258	chr16	88338466	88338467	rs7404292	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q24.2		rs7404292-A	0.32	7E-20		9.14	z score increase	Affymetrix [9061022] (imputed)	N
1258	chr16	88338466	88338467	rs7404292	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q24.2	NR	rs7404292-A	0.3288	1E-17				NR [9056863] (imputed)	N
1259	chr16	88342638	88342639	rs7199889	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q24.2	NR	rs7199889-G	0.657276	6E-11		0.0473414	[0.033-0.061] unit increase	Affymetrix [17914406] (imputed)	N
1259	chr16	88348933	88348934	rs7198017	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7198017-C	0.534596	1E-8		0.0503803	[0.032-0.068] increase	Affymetrix [11014269] (imputed)	N
1259	chr16	88378574	88378575	rs28593290	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	16q24.2	NR	rs28593290-T	0.0197	1E-6		0.9372	[0.56-1.32] unit decrease	Illumina [NR] (imputed)	N
1259	chr16	88453758	88453759	rs4782515	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	16q24.2		rs4782515-?	NR	3E-6		0.25	[0.15-0.35] unit decrease	Illumina [5082878] (imputed)	N
1259	chr16	88457169	88457170	rs78588220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.2		rs78588220-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1259	chr16	88466423	88466424	rs4782351	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.2	ZNF469	rs4782351-A	0.387236	1E-13		0.014161	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1259	chr16	88466423	88466424	rs4782351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.2		rs4782351-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1259	chr16	88466423	88466424	rs4782351	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.2		rs4782351-?	NR	6E-13		0.0156034	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1259	chr16	88467806	88467807	rs7198032	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.2	NR	rs7198032-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1260	chr16	88475073	88475074	rs72805351	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72805351-G	0.88219	8E-9		0.0736629	[0.046-0.101] increase	Affymetrix [11014269] (imputed)	N
1260	chr16	88485380	88485381	rs140798303	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs140798303-T	0.006633	2E-14		0.5	[0.37-0.63] unit increase	NR [11842647] (imputed)	N
1260	chr16	88498298	88498299	rs199897247	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	16q24.2	NR	rs199897247-T	0.0122	2E-12	(SLC9A3R1)	0.05873	NR unit increase	Illumina [1671387] (imputed)	N
1260	chr16	88507171	88507172	rs45580931	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.2	ZNF469	rs45580931-T	0.0428	4E-11		0.0316	[0.022-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
1260	chr16	88507171	88507172	rs45580931	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	16q24.2	NR	rs45580931-T	0.042459	2E-9		0.102856	[0.069-0.137] unit decrease	Affymetrix [17914406] (imputed)	N
1260	chr16	88508780	88508781	rs8045886	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	16q24.2	ZFPM1	rs8045886-C	0.7322	5E-11		0.5373	[0.38-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1260	chr16	88509849	88509849	rs34363155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.2	ZNF469	rs34363155-TGCAC	0.077637	8E-16		0.03495883	[0.026-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88509849	88509849	rs34363155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.2	ZNF469	rs34363155-TGCAC	0.077634	3E-13		0.03169656	[0.023-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88509849	88509849	rs34363155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.2	ZNF469	rs34363155-TGCAC	0.077602	6E-12		0.030423276	[0.022-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88509849	88509849	rs34363155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.2	ZNF469	rs34363155-TGCAC	0.077601	2E-14		0.0332479	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88515191	88515192	rs71394099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs71394099-A	0.01988	1E-12		0.05911185	[0.043-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88515191	88515192	rs71394099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs71394099-A	0.019887	2E-9		0.050524384	[0.034-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88515191	88515192	rs71394099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs71394099-A	0.019908	1E-14		0.0668674	[0.052-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88515191	88515192	rs71394099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.2	ZFPM1	rs71394099-A	0.019898	2E-12		0.057551593	[0.042-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88515191	88515192	rs71394099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.2		rs71394099-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1260	chr16	88516939	88516940	rs904800	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.2		rs904800-?	NR	3E-7		1.05761	[1.04-1.08]	NR [685523]	N
1260	chr16	88517104	88517105	rs904801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	16q24.2	NR	rs904801-A	0.26978599999999997	2E-18		0.0109164	[0.0084-0.0135] unit increase	Affymetrix [16582621] (imputed)	N
1260	chr16	88517104	88517105	rs904801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	16q24.2	NR	rs904801-A	0.26978599999999997	2E-15		0.0103925	[0.0077-0.0131] unit increase	Affymetrix [16582614] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q24.2	ZFPM1	rs12447180-C	0.323716	3E-10		0.015007213	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs12447180-C	0.35224	1E-36				Affymetrix, Illumina [19905671] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	16q24.2	NR	rs12447180-C	0.323627	2E-26		0.023452	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	16q24.2	ZFPM1	rs12447180-C	0.3224	5E-18		0.03246716	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	16q24.2	ZFPM1	rs12447180-C	0.3224	1E-13		0.02767987	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88517721	88517722	rs12447180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	16q24.2	ZFPM1	rs12447180-C	0.3223	2E-12		0.02636175	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88518568	88518569	rs12445547	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	16q24.2	ZNF469, ZFPM1	rs12445547-?	NR	6E-14		0.04253	[0.031-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1260	chr16	88520451	88520452	rs12918968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q24.2		rs12918968-C	NR	2E-50		0.0331	[0.029-0.037] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1260	chr16	88520451	88520452	rs12918968	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q24.2	NR	rs12918968-C	0.4384	2E-32		0.002643	[0.0022-0.0031] unit decrease	Affymetrix [NR] (imputed)	N
1260	chr16	88522540	88522541	rs879627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	16q24.2	ZFPM1	rs879627-G	0.436844	4E-12		0.015623624	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88523814	88523815	rs7206699	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	16q24.2	ZFPM1	rs7206699-C	0.43	1E-8		5.74	z-score increase	Affymetrix [4311822] (imputed)	N
1260	chr16	88523814	88523815	rs7206699	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	16q24.2	ZFPM1	rs7206699-?	NR	6E-19		0.04759	[0.037-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1260	chr16	88524297	88524298	rs4782366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q24.2		rs4782366-C	NR	3E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1260	chr16	88524297	88524298	rs4782366	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q24.2	ZFPM1	rs4782366-T	0.564283	1E-11		0.00161319	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1260	chr16	88524388	88524389	rs4782302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	16q24.2		rs4782302-C	0.584311	1E-15		0.0384887	[0.029-0.048] unit decrease	Illumina [13468899] (imputed)	N
1260	chr16	88524388	88524389	rs4782302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	16q24.2	NR	rs4782302-C	NR	2E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
1260	chr16	88524388	88524389	rs4782302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	16q24.2	ZFPM1	rs4782302-C	0.436405	9E-16		0.018053964	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88527221	88527222	rs67651018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	16q24.2	NR	rs67651018-G	0.488773	2E-15		0.041508	[0.031-0.052] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
1260	chr16	88527221	88527222	rs67651018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	16q24.2	NR	rs67651018-A	0.306898	1E-8		0.00740694	[0.0048-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1260	chr16	88527221	88527222	rs67651018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	16q24.2	NR	rs67651018-A	0.306898	2E-7		0.00800108	[0.005-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1260	chr16	88527325	88527330	rs142015518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	16q24.2		rs142015518-A	NR	1E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1260	chr16	88528779	88528780	rs904790	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	16q24.2	NR	rs904790-?	0.47	8E-6	(FSH)			Illumina [709211]	N
1260	chr16	88530864	88530865	rs10163348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	16q24.2		rs10163348-A	0.541377	1E-13		0.0349276	[0.026-0.044] unit increase	Illumina [13469940] (imputed)	N
1260	chr16	88531860	88531861	rs4782369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16q24.2		rs4782369-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1260	chr16	88533677	88533678	rs12935117	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	16q24.2		rs12935117-G	0.677	1E-19				Affymetrix [10369434] (imputed)	N
1260	chr16	88535340	88535341	rs56292801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	16q24.2	NR	rs56292801-A	0.272655	1E-25		0.00903596	[0.0072-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
1260	chr16	88535340	88535341	rs56292801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	16q24.2	NR	rs56292801-A	0.272655	2E-18		0.00884061	[0.0068-0.0109] unit increase	Affymetrix [16582965] (imputed)	N
1260	chr16	88535619	88535620	rs36049560	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	16q24.2	MIR5189	rs36049560-A	0.681141	1E-12		0.00402537	[0.0029-0.0051] unit decrease	Affymetrix [13995440] (imputed)	N
1260	chr16	88535619	88535620	rs36049560	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q24.2	NR	rs36049560-A	0.68127	1E-17		0.018486	[0.014-0.023] unit decrease	NR [NR]	N
1260	chr16	88535669	88535670	rs34088055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	16q24.2		rs34088055-T	NR	6E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1260	chr16	88535669	88535670	rs34088055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	16q24.2		rs34088055-T	0.578813	2E-10		0.0226263	[0.016-0.03] unit decrease	Illumina [13478928] (imputed)	N
1260	chr16	88536773	88536774	rs870021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	16q24.2		rs870021-T	0.677839	3E-9		0.0254472	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1260	chr16	88540082	88540083	rs553759219	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs553759219-G	7.812E-4	1E-14		1.49	[1.11-1.87] unit increase	NR [11842647] (imputed)	N
1260	chr16	88541139	88541140	rs7196578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	16q24.2		rs7196578-T	NR	3E-14		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1260	chr16	88541169	88541170	rs7188539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	16q24.2		rs7188539-C	0.579581	1E-8		0.0215795	[0.014-0.029] unit decrease	Illumina [13476599] (imputed)	N
1260	chr16	88542983	88542984	rs58397833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q24.2		rs58397833-G	NR	9E-13		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1260	chr16	88544492	88544493	rs188255148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs188255148-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1260	chr16	88546252	88546253	rs55880988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	16q24.2		rs55880988-A	NR	1E-12		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1260	chr16	88546268	88546269	rs566571310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.2	ZFPM1	rs566571310-G	0.018025	2E-9		0.056422602	[0.038-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88549263	88549264	rs55637647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	16q24.2		rs55637647-G	NR	2E-8		0.0657	[0.043-0.088] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1260	chr16	88549263	88549264	rs55637647	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	16q24.2	ZFPM1	rs55637647-G	0.34	1E-7		1.18	1.11-1.26	Illumina [9210350] (imputed)	N
1260	chr16	88549263	88549264	rs55637647	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	16q24.2	ZFPM1	rs55637647-G	0.38	3E-9		1.17	[1.12-1.22]	Illumina [at least 371504] (imputed)	N
1260	chr16	88549263	88549264	rs55637647	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	16q24.2	ZFPM1	rs55637647-G	0.37	3E-9		1.17	[1.09-1.24]	Illumina [~ 8900000] (imputed)	N
1260	chr16	88551081	88551082	rs2047596	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q24.2	ZFPM1	rs2047596-?		1E-8		0.0202	[0.013-0.027] unit decrease	Illumina [31500000] (imputed)	N
1260	chr16	88551081	88551082	rs2047596	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	16q24.2	ZFPM1	rs2047596-?		4E-8		0.0234	[0.015-0.032] unit decrease	Illumina [31500000] (imputed)	N
1260	chr16	88551152	88551153	rs12597024	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16q24.2		rs12597024-T	0.652	3E-9				Affymetrix [10369434] (imputed)	N
1260	chr16	88551152	88551153	rs12597024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	16q24.2	NR	rs12597024-C	NR	1E-15		0.0208	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1260	chr16	88551152	88551153	rs12597024	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	16q24.2	ZFPM1	rs12597024-T	0.638	2E-8		0.0156	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1260	chr16	88553197	88553198	rs28634651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	ZFPM1	rs28634651-C	0.378783	6E-21		0.022487173	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88553197	88553198	rs28634651	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2	ZFPM1	rs28634651-C	0.378794	1E-13		0.01775089	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88553197	88553198	rs28634651	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	16q24.2	ZFPM1	rs28634651-T	0.61	2E-12		0.51	[0.37-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1260	chr16	88553197	88553198	rs28634651	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	16q24.2	ZFPM1	rs28634651-?	NR	2E-10		0.03057	[0.021-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1260	chr16	88554479	88554480	rs9937296	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q24.2	NR	rs9937296-C	0.7708	2E-10		0.0445	[0.031-0.058] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1260	chr16	88556003	88556004	rs62048971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	16q24.2		rs62048971-A	NR	2E-40		0.0318	[0.027-0.037] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1260	chr16	88556650	88556651	rs60929009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	16q24.2		rs60929009-G	0.875	5E-25				Affymetrix [10369434] (imputed)	N
1260	chr16	88556879	88556880	rs10852622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	16q24.2	ZFPM1	rs10852622-G	0.286	3E-12		0.02848381	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88557428	88557429	rs146781884	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	16q24.2		rs146781884-?	NR	2E-6		0.89	[0.53-1.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	ZFPM1	rs17175830-A	0.237151	4E-35		0.033496823	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2	ZFPM1	rs17175830-A	0.23714	2E-39		0.035396542	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	16q24.2	ZFPM1	rs17175830-A	0.236927	6E-32		0.03091325	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.2	ZFPM1	rs17175830-A	0.236932	2E-37		0.03360936	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs17175830-A	0.266353	3E-53				Affymetrix, Illumina [24588908] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q24.2	NR	rs17175830-A	0.238143	1E-50		0.034345	[0.03-0.039] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.2	NR	rs17175830-A	0.256732	8E-44				Affymetrix, Illumina [19872809] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q24.2	NR	rs17175830-A	0.237656	4E-42		0.032179	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1260	chr16	88558163	88558164	rs17175830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	16q24.2		rs17175830-?	NR	9E-37				NR [~ 8900000] (imputed)	N
1260	chr16	88558311	88558312	rs59865663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16q24.2	ZFPM1	rs59865663-A	0.2043	1E-19		0.0418761	[0.033-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88558311	88558312	rs59865663	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16q24.2	ZFPM1	rs59865663-A	0.2042	9E-19		0.04081154	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88559244	88559245	rs34416903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	16q24.2		rs34416903-C	NR	1E-27		0.0198	[0.016-0.023] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1260	chr16	88559244	88559245	rs34416903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.2	ZFPM1	rs34416903-C	0.283009	3E-17		0.021431247	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88559510	88559511	rs113895617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	16q24.2	ZFPM1	rs113895617-A	0.1256	6E-9		0.03589404	[0.024-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88559761	88559762	rs118090537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	16q24.2	ZFPM1	rs118090537-A	0.2039	7E-14		0.03398632	[0.025-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88559840	88559841	rs74035505	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035505-T	0.1984	4E-11		0.03038877	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88559850	88559851	rs74035506	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035506-G	0.1991	4E-13		0.03331346	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88561725	88561726	rs12051124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q24.2	ZFPM1	rs12051124-T	0.055709	2E-11		0.03307647	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88566052	88566053	rs12232460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.2	ZFPM1	rs12232460-A	0.041127	2E-22		0.05469717	[0.044-0.066] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88566052	88566053	rs12232460	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.2		rs12232460-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1260	chr16	88566367	88566368	rs12185173	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	16q24.2		rs12185173-A	0.798	2E-14				Affymetrix [10369434] (imputed)	N
1260	chr16	88566410	88566411	rs12232375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs12232375-C	0.02221	2E-23		0.0776424	[0.064-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88566410	88566411	rs12232375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.2	ZFPM1	rs12232375-C	0.022212	7E-22		0.07192202	[0.057-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88566410	88566411	rs12232375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.2		rs12232375-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1260	chr16	88566410	88566411	rs12232375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.2	ZFPM1	rs12232375-C	0.021	2E-9		0.07798924	[0.053-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88566410	88566411	rs12232375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q24.2	ZFPM1	rs12232375-C	0.0209	8E-10		0.07996949	[0.054-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.079109	1E-25		0.043905836	[0.036-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.079079	4E-20		0.038343865	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.07909	2E-11		0.027647505	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q24.2		rs74035509-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.079	5E-9		0.03985692	[0.027-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.0789	6E-13		0.04897335	[0.036-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.079	4E-11		0.04447889	[0.031-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88567332	88567333	rs74035509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	16q24.2	ZFPM1	rs74035509-T	0.0791	3E-9		0.0394928	[0.026-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1260	chr16	88568830	88568831	rs4782371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.2		rs4782371-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1260	chr16	88568830	88568831	rs4782371	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	16q24.2	ZFPM1	rs4782371-T	0.67	1E-9		0.07	[0.048-0.092] unit decrease	Affymetrix, Illumina [6705861] (imputed)	N
1260	chr16	88568895	88568896	rs12443806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.2	ZFPM1	rs12443806-G	0.097175	2E-18		0.03345561	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88569238	88569239	rs883284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs883284-?	NR	8E-54				NR [~ 8900000] (imputed)	N
1260	chr16	88569287	88569287	rs139829677	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	16q24.2	NR	rs139829677-G	0.958903	1E-13		0.0365414	[0.027-0.046] unit decrease	Affymetrix [15000001]	N
1260	chr16	88570133	88570134	rs12447718	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	16q24.2	ZFPM1	rs12447718-?		4E-8				Illumina [NR]	N
1260	chr16	88573168	88573169	rs11076614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs11076614-A	0.041198	6E-20		0.051965106	[0.041-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88573168	88573169	rs11076614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.2	ZFPM1	rs11076614-A	0.041218	2E-12		0.040343154	[0.029-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88575438	88575439	rs8045833	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	16q24.2		rs8045833-A	0.27	9E-12		0.0753	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1260	chr16	88575438	88575439	rs8045833	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	16q24.2	NR	rs8045833-G		3E-7		0.108	[0.067-0.149] SD units decrease	NR [10700000] (imputed)	N
1260	chr16	88578087	88578088	rs36075092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.2	ZFPM1	rs36075092-G	0.306691	7E-10		0.015311	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1260	chr16	88578087	88578088	rs36075092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.2	ZFPM1	rs36075092-G	0.306744	3E-12		0.017295962	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1260	chr16	88580795	88580796	rs147032017	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	16q24.2	ZFPM1	rs147032017-T	NR	5E-9		0.08212101	[0.055-0.11] unit increase	Illumina [242289]	N
1260	chr16	88582870	88582871	rs77013160	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	16q24.2	ZFPM1	rs77013160-G	0.981029	2E-8		0.0434337	[0.028-0.059] unit decrease	Affymetrix [NR] (imputed)	N
1260	chr16	88582870	88582871	rs77013160	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	16q24.2	ZFPM1	rs77013160-?	NR	6E-9		0.0561	[0.039-0.073] unit increase	Affymetrix [5701386] (imputed)	N
1260	chr16	88592474	88592475	rs561981265	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs561981265-A	0.00228	4E-19		1.03	[0.8-1.26] unit increase	NR [11842647] (imputed)	N
1260	chr16	88597148	88597149	rs12923090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	RP11-21B21.4, ZFPM1	rs12923090-T	0.9279506	1E-9		0.02681342	[0.018-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88607410	88607411	rs187169832	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs187169832-A	0.001117	1E-19		1.5	[1.18-1.82] unit increase	NR [11842647] (imputed)	N
1261	chr16	88615526	88615527	rs150547671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2		rs150547671-T	0.00794200000000001	8E-10		0.079961635	[0.054-0.106] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr16	88618794	88618795	rs8062396	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on CD28- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q24.2		rs8062396-A	0.47689	8E-9		0.1626	[0.11-0.22] unit decrease	Illumina [17954496] (imputed)	N
1261	chr16	88638871	88638872	rs530518382	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs530518382-C	0.001617	7E-10		0.86	[0.59-1.13] unit increase	NR [11842647] (imputed)	N
1261	chr16	88642177	88642178	rs58814925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.2	ZC3H18	rs58814925-C	0.236071	1E-11		0.018376598	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88642177	88642178	rs58814925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.2	ZC3H18	rs58814925-C	0.236082	5E-13		0.01951582	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88648202	88648203	rs11076681	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	16q24.2	ZC3H18	rs11076681-G	0.200942671264213	4E-6	(G_Clostridium_sensu_stricto_HB)	0.290534	[0.17-0.41] unit increase	Illumina [7711310] (imputed)	N
1261	chr16	88650868	88650869	rs763350044	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	16q24.2	ZC3H18	rs763350044-A	0.9981	4E-6		0.8267	[0.47-1.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1261	chr16	88670458	88670459	rs117463496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.2		rs117463496-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1261	chr16	88680854	88680855	rs4782380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.2	ZC3H18	rs4782380-T	0.448531	1E-9		0.013935872	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88680854	88680855	rs4782380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.2	ZC3H18	rs4782380-T	0.448676	2E-10		0.017451	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88684494	88684495	rs17700884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.2	ZC3H18	rs17700884-T	0.359604	9E-12		0.015788166	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1261	chr16	88697486	88697487	rs2291160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	16q24.2		rs2291160-A	NR	1E-13		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1261	chr16	88697486	88697487	rs2291160	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	16q24.2	ZC3H18	rs2291160-G	0.55	1E-10		6.46	z-score increase	Affymetrix [4314223] (imputed)	N
1261	chr16	88697486	88697487	rs2291160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	16q24.2	ZC3H18	rs2291160-A	0.451153	5E-12		0.01546539	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1261	chr16	88710832	88710833	rs3180279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.2		rs3180279-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1261	chr16	88721537	88721538	rs4782309	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	16q24.2	APRT, CBFA2T3, CDT1, CTU2, CYBA, GALNS, IL17C, LOC339059, LOC100129697, LOC100289580, MIR4722, MIR5189, MVD, PABPN1L, PIEZO1, RNF166, SNAI3, SNAI3-AS1, TRAPPC2L, ZC3H18, ZFPM1, ZNF469	rs4782309-?	NR	1E-7				Illumina [9143600] (imputed)	N
1261	chr16	88729572	88729573	rs3794625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.2		rs3794625-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1261	chr16	88732572	88732573	rs140142658	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	16q24.2	SNAS1, SNAI3	rs140142658-G	0.016	1E-8		0.133	[0.088-0.178] unit increase	Affymetrix [at least 897981] (imputed)	N
1262	chr16	88737731	88737732	rs987189531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.2	SNAI3-AS1	rs987189531-T	2.29999999999952E-4	5E-15		0.6622744	[0.5-0.83] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88737731	88737732	rs987189531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.2	SNAI3-AS1	rs987189531-T	2.29999999999952E-4	3E-13		0.61850595	[0.45-0.78] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88737731	88737732	rs987189531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.2	SNAI3-AS1	rs987189531-T	2.29999999999952E-4	4E-12		0.58548284	[0.42-0.75] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88737731	88737732	rs987189531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.2	SNAI3-AS1	rs987189531-T	2.29999999999952E-4	5E-11		0.55525845	[0.39-0.72] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88748197	88748198	rs181794846	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.2		rs181794846-A	0.003749	8E-10		0.23	[0.16-0.3] unit decrease	NR [11842647] (imputed)	N
1262	chr16	88750942	88750943	rs189094974	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.2		rs189094974-A	0.002351	9E-30		1.35	[1.12-1.58] unit increase	NR [11842647] (imputed)	N
1262	chr16	88765173	88765174	rs78069475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16q24.2		rs78069475-G	NR	3E-8		0.0286	[0.019-0.039] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1262	chr16	88769212	88769213	rs80030016	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs80030016-A	NR	2E-8		1.76633	[1.15-2.38] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1262	chr16	88769212	88769213	rs80030016	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	NR	rs80030016-A	NR	2E-6		1.2951053	[1.17-1.44]	Affymetrix [5734850] (imputed)	N
1262	chr16	88769399	88769400	rs4782318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs4782318-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1262	chr16	88769757	88769758	rs75410747	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs75410747-?	NR	1E-7		1.18656	[1.12-1.25]	NR [685523]	N
1262	chr16	88769757	88769758	rs75410747	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs75410747-A	NR	6E-59		0.425	[0.22-0.63] unit increase	Affymetrix [8351141] (imputed)	N
1262	chr16	88771053	88771054	rs116094457	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	16q24.3	RNF166	rs116094457-T	0.0293	2E-6		0.0212	[0.013-0.03] unit increase	Affymetrix [~ 7740000] (imputed)	N
1262	chr16	88773892	88773893	rs11641365	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	16q24.3	CTU2	rs11641365-?	NR	3E-7	(ADOS CSS RRB much higher than SA)	2.06	[1.54-2.76]	Illumina [up to 2017939]	N
1262	chr16	88775219	88775220	rs4238685	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16q24.3	CTU2	rs4238685-T	0.1003	6E-10	(conditional)	0.0064	[0.0021-0.0107] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1262	chr16	88776498	88776499	rs61744010	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	16q24.3	MVD	rs61744010-T	0.437854	4E-8		5.49	z score increase	NR [10847151] (imputed)	N
1262	chr16	88777072	88777073	rs12925612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	CTU2	rs12925612-C	0.0120130000000001	3E-9		0.0622604	[0.042-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88777241	88777242	rs8052560	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	16q24.3	CTU2/GALNS	rs8052560-A	0.79	3E-8		0.029	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1262	chr16	88780684	88780685	rs7191439	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	16q24.3	CTU2	rs7191439-T	0.8805	3E-10		0.03665218	[0.025-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88781039	88781040	rs8059048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs8059048-G	NR	3E-11		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	3E-26		0.10871	[0.088-0.129] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	4E-13		0.0690033	[0.049-0.089] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	9E-25		0.105639	[0.085-0.126] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	2E-22		0.0988621	[0.078-0.119] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	6E-16		0.0672597	[0.051-0.084] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	16q24.3		rs61745086-?	NR	6E-12		0.0632152	[0.044-0.082] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00997300000000001	3E-17		0.09965627	[0.077-0.123] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00997099999999995	2E-21		0.11263127	[0.089-0.136] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00998399999999999	8E-16		0.093102865	[0.07-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00998100000000002	9E-19		0.0913314	[0.069-0.114] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00996300000000005	8E-20		0.10659208	[0.084-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.009961	2E-24		0.11930306	[0.096-0.142] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00998100000000002	6E-29		0.12948267	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.00998200000000005	7E-15		0.09031716	[0.068-0.113] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.0111	4E-9		0.1064338	[0.071-0.142] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88782049	88782050	rs61745086	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.3	PIEZO1	rs61745086-A	0.0111	4E-11		0.1197973	[0.084-0.155] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88782107	88782108	rs201746476	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	16q24.3		rs201746476-?	NR	2E-9		0.262595	[0.18-0.35] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88782158	88782159	rs200243384	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs200243384-?	NR	4E-22		0.66553	[0.53-0.8] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88782187	88782188	rs1302534959	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs1302534959-?	NR	6E-20		1.76271	[1.37-2.15] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	16q24.3		rs202127176-?	NR	4E-17		0.198669	[0.15-0.25] unit increase	NR [9800000] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs202127176-C	0.00143599999999999	3E-29		0.33201006	[0.27-0.39] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs202127176-C	0.00143700000000002	6E-36		0.370475	[0.31-0.43] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs202127176-C	0.00145600000000001	7E-14		0.251821	[0.2-0.31] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs202127176-C	0.00144100000000003	9E-28		0.32131782	[0.26-0.38] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88782204	88782205	rs202127176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs202127176-C	0.00144100000000003	3E-33		0.35324034	[0.3-0.41] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88783063	88783064	rs563555492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	8,189 South Asian ancestry individuals	NA	16q24.3	NR	rs563555492-T	0.0323025	9E-12		0.302867	[0.22-0.39] SD units increase	Affymetrix, Illumina [28493162] (imputed)	N
1262	chr16	88783063	88783064	rs563555492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	8,189 South Asian ancestry individuals	NA	16q24.3	NR	rs563555492-T	0.0323025	5E-22		0.4269	[0.34-0.51] SD units increase	Affymetrix, Illumina [28493177] (imputed)	N
1262	chr16	88783063	88783064	rs563555492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	8,189 South Asian ancestry individuals	NA	16q24.3	NR	rs563555492-T	0.0323025	6E-14		0.332811	[0.25-0.42] SD units increase	Affymetrix, Illumina [28493283] (imputed)	N
1262	chr16	88783902	88783903	rs7186082	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q24.3	PIEZO1	rs7186082-?	NR	3E-8		0.021059558	[0.014-0.029] unit increase	Illumina [27896057] (imputed)	N
1262	chr16	88783902	88783903	rs7186082	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	16q24.3	NR	rs7186082-?	NR	4E-6		0.0339	[0.02-0.048] unit increase	Illumina [~ 7800000] (imputed)	N
1262	chr16	88784653	88784654	rs562212325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3	PIEZO1	rs562212325-C	0.00144500000000003	1E-9		0.17822976	[0.12-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88784653	88784654	rs562212325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	PIEZO1	rs562212325-C	0.00144299999999997	3E-18		0.2545382	[0.2-0.31] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88784653	88784654	rs562212325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.3	PIEZO1	rs562212325-C	0.00144599999999995	9E-10		0.17917424	[0.12-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88784653	88784654	rs562212325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.3	PIEZO1	rs562212325-C	0.0015	3E-18		0.4030956	[0.31-0.49] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88784653	88784654	rs562212325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q24.3	PIEZO1	rs562212325-C	0.0015	5E-16		0.3739617	[0.28-0.46] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88786072	88786073	rs587776991	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	16q24.3		rs587776991-?	NR	2E-12		1.28548	[0.9-1.67] unit increase	NR [9800000] (imputed)	N
1262	chr16	88786072	88786073	rs587776991	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	16q24.3		rs587776991-?	NR	3E-14		1.35229	[0.98-1.72] unit increase	NR [9800000] (imputed)	N
1262	chr16	88786072	88786073	rs587776991	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs587776991-?	NR	7E-56		2.7775	[2.41-3.14] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88786072	88786073	rs587776991	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	16q24.3		rs587776991-?	NR	4E-8		0.935094	[0.56-1.31] unit increase	NR [9800000] (imputed)	N
1262	chr16	88786072	88786073	rs587776991	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	16q24.3		rs587776991-?	NR	1E-8		0.904451	[0.56-1.25] unit increase	NR [9800000] (imputed)	N
1262	chr16	88787387	88787388	rs8059794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q24.3	PIEZO1	rs8059794-C	NR	1E-8		0.0245609	[0.016-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1262	chr16	88787830	88787831	rs549222282	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs549222282-?	NR	1E-20		0.993197	[0.77-1.22] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	16q24.3		rs202099525-?	NR	7E-13		0.225579	[0.16-0.29] unit increase	NR [9800000] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	16q24.3		rs202099525-?	NR	6E-13		0.220456	[0.16-0.28] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	16q24.3		rs202099525-?	NR	9E-11		0.207625	[0.14-0.27] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.35000000000019E-4	5E-12		0.2512772	[0.18-0.32] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.41999999999998E-4	5E-10		0.22933063	[0.16-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.43999999999945E-4	7E-9		0.21303485	[0.14-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.43999999999945E-4	3E-15		0.322097	[0.25-0.39] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.47999999999949E-4	2E-10		0.22862224	[0.16-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88788036	88788037	rs202099525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16q24.3	PIEZO1	rs202099525-A	9.0E-4	9E-11		0.3896876	[0.27-0.51] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88788059	88788060	rs72811487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs72811487-A	NR	9E-17		0.0554	[0.042-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr16	88788865	88788866	rs754947292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs754947292-A	9.89000000000018E-4	3E-9		0.255896	[0.18-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88788933	88788934	rs4238686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3	PIEZO1	rs4238686-G	0.528023	4E-11		0.0134495	[0.0094-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88788933	88788934	rs4238686	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs4238686-A	0.528003	3E-29		0.0249887	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88788933	88788934	rs4238686	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.3	PIEZO1	rs4238686-A	0.47185	2E-15		0.0155231	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1262	chr16	88788933	88788934	rs4238686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.3	PIEZO1	rs4238686-G	0.5267	2E-9		0.0211683	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88788933	88788934	rs4238686	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16q24.3	PIEZO1	rs4238686-G	0.5266	9E-29		0.03875548	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88792096	88792097	rs4782429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs4782429-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1262	chr16	88793219	88793220	rs372935580	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs372935580-?	NR	4E-44		0.378566	[0.32-0.43] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88794402	88794403	rs8053350	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	16q24.3	NR	rs8053350-A	0.56	7E-19		0.132	[0.1-0.16] unit decrease	Affymetrix [10972371] (imputed)	N
1262	chr16	88795978	88795979	rs112825927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs112825927-A	0.240269	5E-14		0.01986742	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88796770	88796770	rs111350029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	16q24.3	PIEZO1	rs111350029-GGGAGGC	0.8603	2E-11		0.03694235	[0.026-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88797925	88797926	rs55924855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs55924855-?	NR	4E-63				NR [~ 8900000] (imputed)	N
1262	chr16	88798287	88798288	rs368019686	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	16q24.3		rs368019686-?	NR	8E-18		0.622886	[0.47-0.77] unit increase	NR [9800000] (imputed)	N
1262	chr16	88798287	88798288	rs368019686	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	16q24.3		rs368019686-?	NR	4E-14		0.535623	[0.39-0.68] unit increase	NR [9800000] (imputed)	N
1262	chr16	88798287	88798288	rs368019686	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs368019686-?	NR	9E-42		1.03399	[0.89-1.18] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88798287	88798288	rs368019686	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	16q24.3		rs368019686-?	NR	1E-14		0.469955	[0.33-0.61] unit increase	NR [9800000] (imputed)	N
1262	chr16	88798519	88798520	rs567292015	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q24.3	PIEZO1, RP5-1142A6.2	rs567292015-A	0.0066	1E-9		0.1531636	[0.1-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88798519	88798520	rs567292015	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	16q24.3	PIEZO1, RP5-1142A6.2	rs567292015-A	0.0066	4E-9		0.1462125	[0.097-0.195] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88798918	88798919	rs201226914	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	16q24.3		rs201226914-?	NR	5E-16		0.203006	[0.15-0.25] unit increase	NR [9800000] (imputed)	N
1262	chr16	88798918	88798919	rs201226914	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	16q24.3		rs201226914-?	NR	2E-9		0.162139	[0.11-0.22] unit increase	NR [9800000] (imputed)	N
1262	chr16	88798918	88798919	rs201226914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	16q24.3	NR	rs201226914-T	NR	3E-10		0.195	[0.13-0.26] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr16	88798918	88798919	rs201226914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs201226914-T	NR	1E-68		0.5492	[0.49-0.61] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr16	88798918	88798919	rs201226914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16q24.3	PIEZO1	rs201226914-T	0.001413	5E-9		0.17521653	[0.12-0.23] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88800294	88800295	rs2306050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3	RP5-1142A6.2, PIEZO1	rs2306050-T	0.211479	7E-11		0.017852187	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88800294	88800295	rs2306050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	RP5-1142A6.2, PIEZO1	rs2306050-T	0.211481	7E-15		0.021386465	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88800294	88800295	rs2306050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.3	RP5-1142A6.2, PIEZO1	rs2306050-T	0.211482	4E-10		0.017117653	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88801302	88801303	rs747972920	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	16q24.3		rs747972920-?	NR	2E-13		0.648154	[0.48-0.82] unit decrease	NR [9800000] (imputed)	N
1262	chr16	88803123	88803124	rs13333358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs13333358-C	0.288678	6E-11		0.01720975	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88803204	88803205	rs142484519	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	9,525 South Asian ancestry individuals	NA	16q24.3	PIEZO1, LOC100289580	rs142484519-A	0.0345	1E-19		0.242	[0.19-0.29] unit decrease	Illumina, Perlegen [19922415] (imputed)	N
1262	chr16	88803981	88803982	rs6500493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q24.3		rs6500493-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1262	chr16	88806347	88806348	rs10775348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.3		rs10775348-?	NR	2E-53				NR [~ 8900000] (imputed)	N
1262	chr16	88812327	88812328	rs9788834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q24.3	PIEZO1	rs9788834-G	NR	3E-8		0.0194482	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1262	chr16	88813059	88813060	rs78579285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	16q24.3		rs78579285-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1262	chr16	88813059	88813060	rs78579285	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	16q24.3	PIEZO1	rs78579285-?	NR	6E-12		0.104	[0.133-0.074] unit decrease	Illumina [12039492] (imputed)	N
1262	chr16	88820300	88820301	rs12597726	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	16q24.3	PIEZO1	rs12597726-A	NR	9E-6		14.25	[8.06-20.44] unit decrease	Illumina [4471676] (imputed)	N
1262	chr16	88820300	88820301	rs12597726	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Remission after antidepressant treatment in major depression	161 European ancestry remitters, 146 European ancestry non-remitters	NA	16q24.3	PIEZO1	rs12597726-A	NR	1E-6		0.33	[0.21-0.51]	Illumina [4471676] (imputed)	N
1262	chr16	88821707	88821708	rs4782347	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	16q24.3	PIEZO1	rs4782347-G	0.469551547915608	8E-6		0.0024242	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1262	chr16	88828161	88828162	rs7192637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs7192637-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1262	chr16	88828200	88828201	rs187348148	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs187348148-A	0.002011	8E-11		0.83	[0.58-1.08] unit decrease	NR [11842647] (imputed)	N
1262	chr16	88833473	88833474	rs11861895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs11861895-G	NR	4E-11		0.0657	[0.046-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1262	chr16	88834013	88834014	rs11643303	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.3	PIEZO1	rs11643303-A	0.888441	2E-14		0.0229208	[0.017-0.029] unit decrease	NR [13737936] (imputed)	N
1262	chr16	88834013	88834014	rs11643303	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.3		rs11643303-?	NR	1E-12		0.0238566	[0.017-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1262	chr16	88835544	88835545	rs2911463	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	16q24.3		rs2911463-A	0.685464	2E-34		0.0046635	[0.0039-0.0054] unit decrease	Affymetrix [10829469] (imputed)	N
1262	chr16	88835544	88835545	rs2911463	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	16q24.3	NR	rs2911463-A	0.69	5E-29		0.174	[0.14-0.21] unit decrease	Affymetrix [10972371] (imputed)	N
1262	chr16	88837297	88837298	rs8052370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3	PIEZO1	rs8052370-T	0.609602	4E-12		0.016162159	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88837297	88837298	rs8052370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q24.3	PIEZO1	rs8052370-T	0.609705	3E-18		0.020042876	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88837297	88837298	rs8052370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs8052370-T	0.602634	5E-24				Affymetrix, Illumina [23472807] (imputed)	N
1262	chr16	88837297	88837298	rs8052370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	16q24.3	NR	rs8052370-T	0.609467	6E-25		0.021027	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1262	chr16	88840461	88840462	rs10445033	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	16q24.3	NR	rs10445033-?	NR	6E-11		0.08263728	[0.058-0.107] unit decrease	Illumina [27815891] (imputed)	N
1262	chr16	88840461	88840462	rs10445033	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	16q24.3	FAM38A, PIEZO1	rs10445033-G	0.37	2E-22	(EA, MCHC)	0.02	[-0.00352-0.04352] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1262	chr16	88840563	88840564	rs10445034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	16q24.3	PIEZO1	rs10445034-T	0.238448	5E-16		0.02119409	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88842116	88842117	rs2002833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	16q24.3		rs2002833-A	NR	9E-57		0.1769	[0.16-0.2] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1262	chr16	88844002	88844003	rs118132614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs118132614-C	NR	4E-9		0.0319	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1262	chr16	88844931	88844932	rs9933309	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	16q24.3	CYBA	rs9933309-C	0.63	1E-8		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1262	chr16	88846950	88846951	rs475596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	16q24.3		rs475596-C	NR	3E-14		0.0163	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1262	chr16	88847737	88847738	rs57258486	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	16q24.3	PIEZO1	rs57258486-A	0.2423	4E-7		0.0406	[0.025-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	16q24.3		rs2608604-?	0.6186	4E-6		0.0142	[0.0081-0.0203] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	16q24.3		rs2608604-?	0.6302	3E-7		0.0436	[0.027-0.06] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	16q24.3		rs2608604-?	0.566	7E-13		0.0788	[0.057-0.1] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	16q24.3		rs2608604-?	0.6186	3E-18		0.0529	[0.041-0.065] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	16q24.3		rs2608604-?	0.566	1E-5		0.0504	[0.028-0.073] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	16q24.3		rs2608604-?	0.6186	6E-9		0.0368	[0.024-0.049] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
1262	chr16	88849420	88849421	rs2608604	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	16q24.3	CDT1	rs2608604-A	NR	2E-9	(Asian)	0.0019	[0.0013-0.0025] unit increase	NR [2500000] (imputed)	N
1262	chr16	88851400	88851401	rs556126054	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Glycated hemoglobin levels	9,823 South Asian ancestry individuals	NA	16q24.3		rs556126054-G	0.0243	1E-27		0.59	[0.49-0.69] mmol/mol decrease	NR [NR] (imputed)	N
1262	chr16	88851667	88851668	rs2926772	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16q24.3	PIEZO1	rs2926772-G	0.606	5E-9		0.02166576	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	16q24.3		rs837763-T	NR	3E-55		0.0271	[0.024-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	16q24.3		rs837763-T	NR	2E-117		0.047	[0.043-0.051] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	16q24.3		rs837763-T	NR	3E-78		0.0305	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	16q24.3		rs837763-T	0.625044	5E-13		0.0228552	[0.017-0.029] unit decrease	Illumina [13478948] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	16q24.3	PIEZO1	rs837763-T	0.6153	5E-7		0.0169	[0.0098-0.024] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1262	chr16	88853728	88853729	rs837763	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	16q24.3	PIEZO1	rs837763-T	0.558	5E-38		0.0176	[0.015-0.02] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-T	0.555722	2E-59		0.036247447	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-C	0.444163	1E-9		0.013460304	[0.0091-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-T	0.55576	6E-11		0.0162056	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-T	0.555776	2E-12		0.015884764	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-T	0.555773	2E-21		0.021441003	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.3	PIEZO1	rs837763-T	0.555731	1E-48		0.0326961	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	16q24.3	NR	rs837763-T	0.556041	8E-81		0.037125	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q24.3	NR	rs837763-T	0.556025	9E-13		0.013992	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	16q24.3	NR	rs837763-C	0.376313	4E-72		0.073571	[0.066-0.082] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs837763-T	0.56997	1E-40				Affymetrix, Illumina [24558453] (imputed)	N
1262	chr16	88853728	88853729	rs837763	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	16q24.3	NR	rs837763-T	0.556493	1E-43		0.02706	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1262	chr16	88853728	88853729	rs837763	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	16q24.3	NR	rs837763-?	NR	8E-12		0.0828276	[0.059-0.107] unit decrease	Illumina [27815891] (imputed)	N
1262	chr16	88853728	88853729	rs837763	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	16q24.3	PIEZO1, CDT1	rs837763-?	NR	7E-56		0.06881	[0.06-0.077] unit decrease novel	Illumina [6108953] (imputed)	N
1262	chr16	88853728	88853729	rs837763	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	16q24.3	CDT1	rs837763-T	0.5548	2E-28		0.0172	[0.014-0.02] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	16q24.3	CDT1	rs837763-T	0.5987	6E-6		0.022	[0.012-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	16q24.3	NR	rs837763-?	NR	2E-11				NR [2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	16q24.3	NR	rs837763-?	NR	1E-8				NR [2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16q24.3	PIEZO1	rs837763-T	0.5541	9E-28		0.0391231	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.3	PIEZO1	rs837763-T	0.5541	4E-15		0.02798102	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88853728	88853729	rs837763	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	16q24.3	CDT1	rs837763-C	0.38	4E-13		0.088	[0.064-0.112] unit increase	Illumina [561583]	N
1262	chr16	88854007	88854008	rs2272443	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.3	PIEZO1	rs2272443-C	0.774944	2E-27		0.0250528	[0.021-0.03] unit increase	NR [13737936] (imputed)	N
1262	chr16	88854007	88854008	rs2272443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.3		rs2272443-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1262	chr16	88854007	88854008	rs2272443	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.3		rs2272443-?	NR	3E-21		0.0224558	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	16q24.3		rs551118-G	NR	4E-18		0.0176	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	16q24.3		rs551118-G	0.624418	3E-11		0.021672	[0.015-0.028] unit decrease	Illumina [13479135] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	16q24.3		rs551118-G	NR	5E-114		0.0464	[0.042-0.05] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	16q24.3		rs551118-G	0.624496	3E-81		0.0718785	[0.064-0.079] unit decrease	Illumina [13477028] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	16q24.3		rs551118-G	NR	1E-29		0.0193	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	16q24.3	PIEZO1	rs551118-?	NR	4E-14		1.3	NR unit decrease	NR [14100000] (imputed)	N
1262	chr16	88856083	88856084	rs551118	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	16q24.3	PIEZO1	rs551118-?	NR	5E-8				NR [14100000] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.3	PIEZO1	rs551118-G	0.579351	1E-28		0.025643412	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.3	PIEZO1	rs551118-G	0.579352	9E-45		0.032501552	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	16q24.3	PIEZO1	rs551118-C	0.5793	4E-103		0.048718	[0.044-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	PIEZO1	rs551118-G	0.579307	4E-93		0.04684276	[0.042-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs551118-G	0.591686	9E-88				Affymetrix, Illumina [24332387] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs551118-G	0.588342	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs551118-G	0.590911	7E-226				Affymetrix, Illumina [21126107] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	16q24.3	NR	rs551118-G	0.579425	6E-157		0.054921	[0.051-0.059] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs551118-G	0.591796	8E-125				Affymetrix, Illumina [24653286] (imputed)	N
1262	chr16	88856083	88856084	rs551118	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	16q24.3	NR	rs551118-G	0.579759	3E-115		0.045331	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1262	chr16	88856083	88856084	rs551118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.3		rs551118-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1262	chr16	88856083	88856084	rs551118	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	16q24.3	PIEZO1	rs551118-C	0.48	4E-14		0.14	[0.10-0.18] g/dL increase	Illumina [27801688] (imputed)	N
1262	chr16	88856083	88856084	rs551118	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	16q24.3	PIEZO1	rs551118-G	0.5784	5E-81		0.06782761	[0.061-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88856100	88856101	rs142326556	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs142326556-T	0.002829	3E-69		1.86	[1.65-2.07] unit increase	NR [11842647] (imputed)	N
1262	chr16	88856948	88856949	rs538565870	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs538565870-T	0.001021	3E-13		1.25	[0.92-1.58] unit increase	NR [11842647] (imputed)	N
1262	chr16	88858601	88858602	rs2926776	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16q24.3		rs2926776-G	NR	4E-13		0.05	[0.03-0.07] unit decrease	Illumina [101200590]	N
1262	chr16	88858601	88858602	rs2926776	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	16q24.3		rs2926776-G	NR	1E-13		0.05	[0.03-0.07] unit decrease	Illumina [110351653]	N
1262	chr16	88858645	88858646	rs2968478	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-T	0.4174	6E-14		0.0141	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.3		rs2968478-G	0.582485	2E-14		0.017793246	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	PIEZO1	rs2968478-T		7E-91		0.045	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.3		rs2968478-?	NR	6E-76				NR [~ 8900000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	16q24.3	PIEZO1, CDT1	rs2968478-?	NR	1E-12		0.05034	[0.036-0.064] unit increase novel	Illumina [6108953] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-G	0.5807	8E-21		0.03473789	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-G	0.5806	4E-31		0.04310191	[0.036-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-G	0.5806	2E-14		0.02842473	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-G	0.5805	5E-44		0.0510282	[0.044-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88858645	88858646	rs2968478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	16q24.3	intergenic	rs2968478-G	0.5805	1E-13		0.02697652	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1262	chr16	88862342	88862343	rs861400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	16q24.3		rs861400-G	0.669861	1E-23		0.0402389	[0.032-0.048] unit increase	Illumina [13476266] (imputed)	N
1262	chr16	88862342	88862343	rs861400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs861400-G	0.592978	2E-18				Affymetrix, Illumina [24649327] (imputed)	N
1262	chr16	88862342	88862343	rs861400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	16q24.3	NR	rs861400-G	0.573026	7E-19		0.017678	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1262	chr16	88862342	88862343	rs861400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	16q24.3	NR	rs861400-C	0.343448	2E-19		0.042888	[0.034-0.052] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1262	chr16	88862342	88862343	rs861400	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	16q24.3	PIEZO1, CDT1	rs861400-?	NR	2E-19		0.04426	[0.035-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1262	chr16	88862567	88862568	rs837756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q24.3		rs837756-C	0.578131	2E-15		0.0183594	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1262	chr16	88862567	88862568	rs837756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs837756-G	0.432249	4E-16				Affymetrix, Illumina [22063850] (imputed)	N
1262	chr16	88862567	88862568	rs837756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	16q24.3	NR	rs837756-G	0.421674	2E-17		0.017453	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1262	chr16	88862567	88862568	rs837756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	16q24.3	NR	rs837756-G	0.355858	1E-10		0.027362	[0.019-0.036] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1262	chr16	88862567	88862568	rs837756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	16q24.3	NR	rs837756-G	0.35584	2E-12		0.030037	[0.022-0.038] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
1262	chr16	88862567	88862568	rs837756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q24.3		rs837756-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1263	chr16	88867639	88867640	rs143290413	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs143290413-G	0.003093	4E-10		0.64	[0.44-0.84] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88890739	88890740	rs117776466	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs117776466-T	0.004735	5E-13		0.59	[0.43-0.75] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88897348	88897349	rs73252814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs73252814-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1263	chr16	88897348	88897349	rs73252814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs73252814-?	NR	4E-89				NR [~ 8900000] (imputed)	N
1263	chr16	88909699	88909700	rs80202043	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	16q24.3	NR	rs80202043-G		4E-7		0.1732	[0.097-0.249] SD units decrease	NR [10700000] (imputed)	N
1263	chr16	88913416	88913417	rs76493861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.3		rs76493861-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1263	chr16	88914232	88914233	rs186727146	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs186727146-T	0.004057	4E-9		0.5	[0.33-0.67] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88918606	88918607	rs7188484	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	16q24.3	GALNS	rs7188484-T	0.196	9E-7		3.576	[2.153-5.94]	Illumina [7585874] (imputed)	N
1263	chr16	88919776	88919777	rs79271306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	16q24.3	NR	rs79271306-A	NR	2E-10		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1263	chr16	88923338	88923339	rs369448232	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs369448232-T	0.003811	5E-11		0.59	[0.42-0.76] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88926875	88926876	rs191651625	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs191651625-A	0.003962	2E-73		1.61	[1.44-1.78] unit increase	NR [11842647] (imputed)	N
1263	chr16	88929206	88929207	rs12921479	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	16q24.3	PABPN1L	rs12921479-?	0.343	9E-7		1.54	[NR]	Illumina [3922209] (imputed)	N
1263	chr16	88932374	88932375	rs79912986	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs79912986-G	NR	2E-18		2.85844	[2.22-3.5] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1263	chr16	88933227	88933228	rs181483773	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs181483773-A	0.002393	9E-22		1.05	[0.83-1.27] unit increase	NR [11842647] (imputed)	N
1263	chr16	88945399	88945400	rs117072674	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs117072674-T	0.00319	2E-9		0.6	[0.41-0.79] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88947687	88947688	rs9934287	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	16q24.3		rs9934287-C	0.953598	7E-6		0.020735	[0.012-0.03] unit decrease	Illumina [13900000] (imputed)	N
1263	chr16	88953786	88953787	rs76106755	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs76106755-?	NR	3E-7		1.11482	[1.07-1.16]	NR [685523]	N
1263	chr16	88956172	88956173	rs188869248	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs188869248-G	0.002922	8E-10		0.63	[0.43-0.83] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88959294	88959295	rs546848555	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs546848555-G	0.001093	4E-10		0.45	[0.31-0.59] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88961092	88961093	rs547859046	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	CBFA2T3	rs547859046-G	0.003856	1E-30		3.014	NR	Affymetrix [9154080] (imputed)	N
1263	chr16	88961128	88961129	rs116233084	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	16q24.3	CBFA2T3	rs116233084-G	NR	5E-6		0.263	[0.15-0.38] unit increase	Illumina [NR] (imputed)	N
1263	chr16	88961128	88961129	rs116233084	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	16q24.3	CBFA2T3	rs116233084-G	0.075	4E-7	(AA)	0.412	[0.25-0.57] unit increase	Illumina [NR] (imputed)	N
1263	chr16	88964556	88964557	rs61734177	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	CBFA2T3	rs61734177-G		1E-9		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1263	chr16	88966666	88966667	rs844396	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	16q24.3	CBFA2T3	rs844396-T	0.3	6E-9		0.0051	[0.0033-0.0069] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
1263	chr16	88967436	88967437	rs533581	24133439	Jones RM	2013-10-11	Front Hum Neurosci	Genome-wide association study of autistic-like traits in a general population study of young adults.	Social autistic-like traits	965 European ancestry young adult individuals	NA	16q24.3	CBFA2T3	rs533581-C		8E-6		1.363	[0.77-1.96] unit increase	Illumina [2462046] (imputed)	N
1263	chr16	88969968	88969969	rs865102	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	16q24.3	NR	rs865102-A	0.65	1E-7		0.008	[0.0041-0.0119] unit increase	NR [NR] (imputed)	N
1263	chr16	88970775	88970776	rs475796	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	16q24.3	NR	rs475796-?	NR	3E-33				Affymetrix [NR]	N
1263	chr16	88972851	88972852	rs72815507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	16q24.3	CBFA2T3	rs72815507-T	0.048145	7E-12		0.03606347	[0.026-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1263	chr16	88972851	88972852	rs72815507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	16q24.3	CBFA2T3	rs72815507-T	0.048144	2E-11		0.035362862	[0.025-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1263	chr16	88972851	88972852	rs72815507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	16q24.3	NR	rs72815507-T	0.048007	7E-14		0.035752	[0.026-0.045] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1263	chr16	88974805	88974806	rs138119553	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs138119553-T	0.005966	2E-9		0.18	[0.12-0.24] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88975446	88975447	rs8058234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPB1	5,363 Icelandic ancestry individuals	NA	16q24.3		rs8058234-G	0.4051	5E-13		0.140312	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1263	chr16	88975897	88975898	rs116895175	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs116895175-G	NR	2E-20		2.97502	[2.35-3.6] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1263	chr16	88975909	88975910	rs7405380	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	16q24.3	PABPN1L	rs7405380-?	NR	2E-9		0.0464	NR L decrease	Affymetrix [9390170] (imputed)	N
1263	chr16	88975909	88975910	rs7405380	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	16q24.3	PABPN1L	rs7405380-?	NR	6E-13		0.0634	NR % increase	Affymetrix [9390170] (imputed)	N
1263	chr16	88976476	88976477	rs1673931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	16q24.3		rs1673931-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1263	chr16	88976967	88976968	rs529900	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	16q24.3	NR	rs529900-C	NR	2E-8		5.599	z score increase	Affymetrix [10847151] (imputed)	N
1263	chr16	88983053	88983054	rs190233891	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs190233891-A	0.008608	2E-11		0.16	[0.11-0.21] unit decrease	NR [11842647] (imputed)	N
1263	chr16	88988988	88988989	rs561732	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	16q24.3	CBFA2T3, LOC100129697, TRAPPC2L	rs561732-T	0.65	4E-9		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
1263	chr16	88989004	88989005	rs488327	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	16q24.3		rs488327-T	0.662676	3E-14		0.0609337	[0.046-0.075] increase	Affymetrix [NR]	N
1263	chr16	88989004	88989005	rs488327	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	16q24.3		rs488327-T	0.663072	8E-15		0.0645249	[0.049-0.08] increase	Affymetrix [NR]	N
1263	chr16	88995594	88995595	rs147376209	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs147376209-G	0.00172	9E-51		2.13	[1.85-2.41] unit increase	NR [11842647] (imputed)	N
1264	chr16	89009493	89009494	rs146447637	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs146447637-T	0.007097	7E-23		0.67	[0.54-0.8] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89014870	89014871	rs12935775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.3	RP11-830F9.6, CBFA2T3	rs12935775-A	0.372319	1E-18		0.020642051	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89014870	89014871	rs12935775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	16q24.3	NR	rs12935775-G	0.62805	8E-22		0.019219	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1264	chr16	89016493	89016494	rs12102677	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	16q24.3	CBFA2T3, RP11-830F9.6	rs12102677-C	0.372	5E-11		0.02467971	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1264	chr16	89021756	89021757	rs554870649	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs554870649-G	0.007459	4E-19		0.59	[0.46-0.72] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89023147	89023148	rs11861335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs11861335-C	0.904115	3E-19				Affymetrix, Illumina [17210439] (imputed)	N
1264	chr16	89024613	89024614	rs117776753	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs117776753-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1264	chr16	89024748	89024749	rs549903041	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs549903041-C	0.003239	7E-14		0.75	[0.55-0.95] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89028008	89028009	rs553467516	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs553467516-G	0.008645	2E-14		0.46	[0.34-0.58] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89028783	89028784	rs150854091	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	16q24.3	CBFA2T3	rs150854091-A	0.08	1E-6		3.64	[2.10-6.33]	Affymetrix [583535] (imputed)	N
1264	chr16	89038879	89038880	rs13333659	31370031	Dou KX	2019-08-01	Aging (Albany NY)	Genome-wide association study identifies CBFA2T3 affecting the rate of CSF A?42 decline in non-demented elders.	Annualised percent change of cerebrospinal fluid AB1-42 levels	321 European ancestry individuals	NA	16q24.3	CBFA2T3	rs13333659-T	0.177	2E-9		0.034	NR % decrease	Illumina [1040042]	N
1264	chr16	89040328	89040329	rs13330216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.3	CBFA2T3	rs13330216-T	0.159339	7E-11		0.019789381	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89042860	89042861	rs7188793	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	16q24.3	CBFA2T3	rs7188793-?	NR	5E-8		1.153	NR	Illumina [8966411] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.069057	2E-12		0.031188969	[0.022-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.069043	8E-15		0.035113376	[0.026-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.069036	6E-18		0.0471005	[0.039-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.069036	1E-25		0.046232414	[0.038-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.069048	4E-13		0.03283996	[0.024-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.3		rs117565673-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1264	chr16	89043453	89043454	rs117565673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q24.3	CBFA2T3	rs117565673-C	0.0721	2E-12		0.04913917	[0.035-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1264	chr16	89045232	89045233	rs62045817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	16q24.3		rs62045817-T	NR	2E-12		0.025	[0.018-0.032] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1264	chr16	89045232	89045233	rs62045817	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	16q24.3		rs62045817-T	0.17391	5E-9		0.2143	[0.14-0.29] unit decrease	Illumina [17926607] (imputed)	N
1264	chr16	89055016	89055017	rs530238572	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs530238572-C	0.001971	4E-95		2.83	[2.56-3.1] unit increase	NR [11842647] (imputed)	N
1264	chr16	89055016	89055017	rs530238572	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	16q24.3		rs530238572-C	0.002141	3E-10		0.46	[0.32-0.6] unit increase	NR [11842647] (imputed)	N
1264	chr16	89056851	89056852	rs577484898	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs577484898-T	8.522E-4	6E-46		2.68	[2.31-3.05] unit increase	NR [11842647] (imputed)	N
1264	chr16	89056851	89056852	rs577484898	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs577484898-T	0.001189	9E-14		0.52	[0.38-0.66] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89057212	89057213	rs117473347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.3		rs117473347-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1264	chr16	89061811	89061812	rs117644533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs117644533-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1264	chr16	89065385	89065386	rs118010021	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs118010021-C	NR	5E-24		3.40184	[2.74-4.06] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1264	chr16	89081074	89081075	rs13332145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.3		rs13332145-G	0.153284	3E-14		0.024601528	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89081074	89081075	rs13332145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3		rs13332145-G	0.153273	2E-11		0.0199798	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89083135	89083136	rs369805468	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	NR	rs369805468-C	NR	3E-8		1.3100048	[1.19-1.44]	Affymetrix [5734850] (imputed)	N
1264	chr16	89084926	89084927	rs62045844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.3	intergenic	rs62045844-T	0.0543	9E-16		0.06368266	[0.048-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1264	chr16	89084926	89084927	rs62045844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	16q24.3	intergenic	rs62045844-T	0.0543	8E-14		0.05932081	[0.044-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1264	chr16	89085742	89085743	rs112584165	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs112584165-G	NR	8E-9		1.5124017	NR	Affymetrix [7846216] (imputed)	N
1264	chr16	89085742	89085743	rs112584165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs112584165-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1264	chr16	89090140	89090141	rs142974136	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	16q24.3	NR	rs142974136-C		9E-6		0.1187	[0.056-0.181] SD units increase	NR [10700000] (imputed)	N
1264	chr16	89094896	89094897	rs146008976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3		rs146008976-T	0.00737399999999999	1E-11		0.0946596	[0.067-0.122] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89094896	89094897	rs146008976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3		rs146008976-T	0.00738899999999998	2E-17		0.113675	[0.089-0.139] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89094896	89094897	rs146008976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.3		rs146008976-T	0.00739299999999998	8E-18		0.116374634	[0.09-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3		rs62045849-A	0.057797	1E-9		0.028894866	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.3		rs62045849-A	0.057833	1E-19		0.044460345	[0.035-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3		rs62045849-A	0.057877	2E-13		0.036164176	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3		rs62045849-A	0.057829	6E-22		0.0532766	[0.045-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.3		rs62045849-A	0.057823	2E-21		0.045362376	[0.036-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1264	chr16	89105006	89105007	rs62045849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	16q24.3	intergenic	rs62045849-A	0.0576	2E-9		0.04579537	[0.031-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1264	chr16	89105686	89105687	rs78987829	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs78987829-G	0.005466	2E-18		0.68	[0.53-0.83] unit decrease	NR [11842647] (imputed)	N
1264	chr16	89121341	89121342	rs12922678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q24.3	Intergenic	rs12922678-T	0.7489	3E-8	(MTAG)	0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1264	chr16	89121341	89121342	rs12922678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q24.3	Intergenic	rs12922678-T	0.7489	6E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1265	chr16	89141489	89141490	rs72817412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	16q24.3	NR	rs72817412-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1265	chr16	89141489	89141490	rs72817412	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q24.3	ACSF3	rs72817412-T	0.058	6E-7		0.0046	[0.003-0.0062] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1265	chr16	89141489	89141490	rs72817412	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q24.3	ACSF3	rs72817412-T	0.0526	3E-7		0.0049	[0.0031-0.0067] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1265	chr16	89141489	89141490	rs72817412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	16q24.3		rs72817412-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1265	chr16	89141722	89141723	rs55733613	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	16q24.3	CBFA2T3	rs55733613-C	NR	1E-6		1.0852	NR	Affymetrix, Illumina [8278136] (imputed)	N
1265	chr16	89154498	89154499	rs11862309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs11862309-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1265	chr16	89157986	89157987	rs187175268	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs187175268-T	0.003909	2E-10		0.58	[0.4-0.76] unit decrease	NR [11842647] (imputed)	N
1265	chr16	89169674	89169675	rs535452231	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs535452231-A	0.002259	3E-12		0.81	[0.58-1.04] unit decrease	NR [11842647] (imputed)	N
1265	chr16	89185174	89185175	rs35561531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs35561531-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1265	chr16	89190312	89190313	rs6500534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	16q24.3		rs6500534-T	0.624611	2E-8		0.0213699	[0.014-0.029] unit decrease	Illumina [13476299] (imputed)	N
1265	chr16	89197521	89197522	rs149432430	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs149432430-C	0.009576	1E-21		0.56	[0.45-0.67] unit decrease	NR [11842647] (imputed)	N
1265	chr16	89203592	89203593	rs138593842	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs138593842-A	0.00207	1E-9		0.76	[0.52-1] unit decrease	NR [11842647] (imputed)	N
1265	chr16	89211410	89211411	rs142820005	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)(time to event)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	16q24.3	ACSF3	rs142820005-?		7E-7	(EA)	2.35	[2.02-2.68]	Illumina [up to 8000000] (imputed)	N
1265	chr16	89211410	89211411	rs142820005	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	16q24.3	ACSF3	rs142820005-?	NR	2E-6	(EA)	2.68	[2.31-3.05]	Illumina [up to 8000000] (imputed)	N
1265	chr16	89211410	89211411	rs142820005	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)(time to event)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	16q24.3	ACSF3	rs142820005-?		2E-8		2.3	[1.72-3.09]	Illumina [up to 8000000] (imputed)	N
1265	chr16	89211410	89211411	rs142820005	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	16q24.3	ACSF3	rs142820005-?		3E-8		2.5	[1.81-3.45]	Illumina [up to 8000000] (imputed)	N
1265	chr16	89214229	89214230	rs189801982	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs189801982-T	0.001366	9E-19		1.21	[0.94-1.48] unit increase	NR [11842647] (imputed)	N
1265	chr16	89235400	89235401	rs117156175	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs117156175-C	NR	1E-26		3.60952	[2.95-4.27] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1265	chr16	89235400	89235401	rs117156175	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs117156175-T	NR	1E-173		0.671	[0.42-0.92] unit increase	Affymetrix [8351141] (imputed)	N
1265	chr16	89253609	89253610	rs66682219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.3		rs66682219-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1265	chr16	89256534	89256535	rs544502037	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs544502037-T	0.005535	4E-12		0.2	[0.15-0.25] unit increase	NR [11842647] (imputed)	N
1266	chr16	89262161	89262162	rs117382825	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs117382825-T	NR	6E-13		1.400168	NR	Affymetrix [7846216] (imputed)	N
1266	chr16	89262161	89262162	rs117382825	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs117382825-T	NR	2E-9		1.3850415	[1.25-1.54]	Affymetrix [7846216] (imputed)	N
1266	chr16	89262161	89262162	rs117382825	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	NR	rs117382825-C	NR	2E-8		1.3015071	[1.19-1.43]	Affymetrix [5734850] (imputed)	N
1266	chr16	89263850	89263851	rs3743986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	16q24.3		rs3743986-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1266	chr16	89273123	89273124	rs774088759	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs774088759-G	7.977E-4	2E-44		2.85	[2.45-3.25] unit increase	NR [11842647] (imputed)	N
1266	chr16	89273123	89273124	rs774088759	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs774088759-G	0.001129	5E-15		0.57	[0.43-0.71] unit decrease	NR [11842647] (imputed)	N
1266	chr16	89293422	89293423	rs149080634	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs149080634-T	0.003856	2E-9		0.2	[0.13-0.27] unit increase	NR [11842647] (imputed)	N
1266	chr16	89293729	89293730	rs72819401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q24.3	NR	rs72819401-T	NR	3E-18		0.0531	[0.041-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1266	chr16	89296646	89296647	rs191394600	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs191394600-A	0.001604	2E-35		1.76	[1.48-2.04] unit increase	NR [11842647] (imputed)	N
1266	chr16	89300181	89300182	rs200249085	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	16q24.3	ZNF778	rs200249085-G	0.0614	7E-10		0.04774569	[0.033-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1266	chr16	89323924	89323925	rs4785645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs4785645-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1266	chr16	89325183	89325184	rs144959042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	16q24.3	RP11-46C24.5	rs144959042-C	0.101871	1E-9		0.02337522	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1266	chr16	89327893	89327894	rs547040838	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs547040838-C	0.001761	2E-9		0.82	[0.55-1.09] unit decrease	NR [11842647] (imputed)	N
1266	chr16	89340319	89340320	rs118048932	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	16q24.3	NR	rs118048932-?	NR	5E-6		0.357346	[0.2-0.51] unit increase	NR [13958389] (imputed)	N
1266	chr16	89345126	89345127	rs144104266	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs144104266-G	NR	5E-31		3.49332	[2.9-4.08] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1266	chr16	89346882	89346883	rs60520302	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	ANKRD11	rs60520302-G		6E-10		0.034	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1266	chr16	89353523	89353524	rs571250448	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs571250448-A	5.537E-4	8E-11		1.59	[1.11-2.07] unit increase	NR [11842647] (imputed)	N
1266	chr16	89362277	89362282	rs10554589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	16q24.3	ANKRD11	rs10554589-G	0.827477	2E-9		0.017971767	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1266	chr16	89362277	89362282	rs10554589	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	16q24.3	ANKRD11	rs10554589-G	0.827	1E-10		0.0309833	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1266	chr16	89362469	89362470	rs567082717	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs567082717-T	0.001277	3E-78		3.15	[2.82-3.48] unit increase	NR [11842647] (imputed)	N
1266	chr16	89363923	89363924	rs117334149	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs117334149-G	0.002346	6E-11		0.78	[0.55-1.01] unit decrease	NR [11842647] (imputed)	N
1266	chr16	89367148	89367149	rs72803314	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs72803314-T	0.0420134	5E-12				Affymetrix, Illumina [23114412] (imputed)	N
1266	chr16	89368029	89368030	rs3114914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	16q24.3		rs3114914-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1266	chr16	89374636	89374637	rs35657869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs35657869-T	NR	5E-11		0.0337	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1266	chr16	89374636	89374637	rs35657869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs35657869-T	NR	7E-12		0.0352	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1266	chr16	89378630	89378631	rs77151370	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs77151370-C	0.002843	1E-13		0.82	[0.6-1.04] unit decrease	NR [11842647] (imputed)	N
1266	chr16	89379426	89379427	rs3114910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs3114910-?	NR	3E-30				NR [~ 8900000] (imputed)	N
1266	chr16	89381124	89381125	rs138146013	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs138146013-G	0.001585	8E-10		0.91	[0.62-1.2] unit decrease	NR [11842647] (imputed)	N
1266	chr16	89382879	89382880	rs72803334	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q24.3	NR	rs72803334-T	NR	9E-17		0.0513	[0.039-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1266	chr16	89383724	89383725	rs3114908	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs3114908-T	NR	2E-328		0.345	[0.24-0.45] unit increase	Affymetrix [8351141] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	6E-6	(men)	0.423178	[0.24-0.61] % decrease	Affymetrix [532676] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	4E-6		0.31955	[0.18-0.45] % decrease	Affymetrix [532676] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	8E-7		0.318916	[0.19-0.44] mm2 decrease	Affymetrix [532676] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	3E-6	(men)	0.405967	[0.24-0.58] mm2 decrease	Affymetrix [532676] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	8E-6	(men)	0.296128	[0.17-0.43] % decrease	Affymetrix [532676] (imputed)	N
1266	chr16	89389631	89389632	rs3114901	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	16q24.3	NR	rs3114901-C	0.0894945	2E-6		0.231122	[0.14-0.33] mm2 decrease	Affymetrix [532676] (imputed)	N
1267	chr16	89417634	89417635	rs563983686	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs563983686-A	0.001225	5E-9		0.98	[0.65-1.31] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89436054	89436055	rs11865298	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs11865298-A	0.007719	1E-24		0.66	[0.53-0.79] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89440543	89440544	rs140088599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.3		rs140088599-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1267	chr16	89446973	89446974	rs558890489	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs558890489-T	0.008366	7E-14		0.46	[0.34-0.58] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89448662	89448663	rs3096299	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q24.3	NR	rs3096299-G	0.45	4E-6	(t11;14 vs non t11;14)	1.54	[1.28-1.86]	Illumina [414804] (imputed)	N
1267	chr16	89450973	89450974	rs117646290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs117646290-?	NR	3E-88				NR [~ 8900000] (imputed)	N
1267	chr16	89454990	89454991	rs117984432	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	16q24.3	RP1-168P16.2	rs117984432-C	NR	1E-6		1.2048193	[1.12-1.32]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1267	chr16	89454990	89454991	rs117984432	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	16q24.3	RP1-168P16.2	rs117984432-C	0.035716	5E-9		1.1363636	[1.09-1.19]	Affymetrix [7600000] (imputed)	N
1267	chr16	89454990	89454991	rs117984432	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	16q24.3	RP1-168P16.2	rs117984432-C	NR	2E-6		1.1111112	[1.06-1.16]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1267	chr16	89459727	89459728	rs112107386	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs112107386-A	0.005424	7E-12		0.53	[0.38-0.68] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89471245	89471246	rs2086824	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		16q24.3	NR	rs2086824-A	0.51	2E-6	(t11;14 vs non t11;14)	1.58	[1.31-1.91]	Illumina [414804] (imputed)	N
1267	chr16	89471730	89471731	rs111774585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ANKRD11	rs111774585-?	NR	7E-11	(male)	3.2872	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1267	chr16	89471730	89471731	rs111774585	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ANKRD11	rs111774585-?	NR	1E-12		2.81905	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1267	chr16	89480521	89480522	rs115459407	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs115459407-A	0.003443	5E-33		1.12	[0.94-1.3] unit increase	NR [11842647] (imputed)	N
1267	chr16	89503966	89503967	rs531960161	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs531960161-G	0.002022	1E-9		0.77	[0.53-1.02] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs74836424-C	NR	1E-63		4.07171	[3.6-4.55] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	16q24.3		rs74836424-C	NR	1E-7		0.537739	[0.34-0.74] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs74836424-?	NR	3E-39		1.26604	[1.23-1.3]	NR [685523]	N
1267	chr16	89507329	89507330	rs74836424	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	16q24.3		rs74836424-?	NR	1E-22		1.47329	[1.4-1.55]	NR [674885]	N
1267	chr16	89507329	89507330	rs74836424	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16q24.3		rs74836424-?	NR	6E-11		1.08243	[1.06-1.11]	NR [688737]	N
1267	chr16	89507329	89507330	rs74836424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q24.3	ANKRD11	rs74836424-T	NR	2E-8		0.0312574	[0.02-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q24.3	ANKRD11	rs74836424-T	NR	7E-10		0.0312177	[0.021-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs74836424-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1267	chr16	89507329	89507330	rs74836424	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	NR	rs74836424-C	NR	5E-18		1.3097955	[1.23-1.39]	Affymetrix [5734850] (imputed)	N
1267	chr16	89507970	89507971	rs71396916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	16q24.3	ANKRD11	rs71396916-C	0.259339	4E-9		0.015291119	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1267	chr16	89507994	89507995	rs2911268	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q24.3	AK097694	rs2911268-A	0.2289	3E-8		0.184	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1267	chr16	89508542	89508543	rs183335528	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs183335528-T	0.001524	1E-10		0.99	[0.69-1.29] unit decrease	NR [11842647] (imputed)	N
1267	chr16	89518941	89518942	rs12922711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	16q24.3	NR	rs12922711-C	0.2122	5E-10		0.015217	[0.01-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1268	chr16	89522746	89522747	rs2965812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs2965812-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1268	chr16	89524132	89524133	rs192694822	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs192694822-C	0.003399	5E-15		0.76	[0.57-0.95] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89533116	89533117	rs188110739	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs188110739-C	0.002629	6E-16		0.92	[0.7-1.14] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89535887	89535888	rs55637757	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs55637757-T	NR	6E-359		0.54	[0.37-0.71] unit increase	Affymetrix [8351141] (imputed)	N
1268	chr16	89555310	89555311	rs74037211	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs74037211-C	0.007237	1E-34		0.83	[0.7-0.96] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89564054	89564055	rs12920022	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	16q24.3	NR	rs12920022-T	0.8397	2E-9		0.0391	[0.026-0.052] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1268	chr16	89564054	89564055	rs12920022	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	16q24.3	SPG7	rs12920022-A	0.1575	3E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1268	chr16	89568874	89568875	rs4785574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.3		rs4785574-?	NR	6E-21				NR [~ 8900000] (imputed)	N
1268	chr16	89572664	89572665	rs57696383	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	16q24.3	SPG7	rs57696383-A	0.524731	3E-10		0.0117194	[0.0081-0.0154] unit increase	NR [13737936] (imputed)	N
1268	chr16	89572664	89572665	rs57696383	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	16q24.3		rs57696383-?	NR	1E-9		0.0119153	[0.0078-0.016] unit increase	Affymetrix [20259828] (imputed)	N
1268	chr16	89572968	89572968	rs34102820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	16q24.3		rs34102820-CTTTT	NR	4E-11		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1268	chr16	89573215	89573216	rs62070319	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	16q24.3	SPG7	rs62070319-T	0.4427	3E-20		0.018	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1268	chr16	89576506	89576507	rs4499232	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs4499232-T	NR	9E-26		1.2057	NR	Affymetrix [7846216] (imputed)	N
1268	chr16	89576506	89576507	rs4499232	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs4499232-T	NR	2E-21		1.19	[1.148-1.234]	Affymetrix [7846216] (imputed)	N
1268	chr16	89577807	89577808	rs541748904	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs541748904-A	0.00181	3E-9		0.78	[0.52-1.04] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89579004	89579005	rs147842723	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs147842723-T	0.002234	1E-12		0.88	[0.64-1.12] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89584585	89584586	rs559382968	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs559382968-G	0.002116	6E-23		1.2	[0.96-1.44] unit increase	NR [11842647] (imputed)	N
1268	chr16	89586658	89586659	rs12924902	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	16q24.3		rs12924902-A	0.382	1E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1268	chr16	89596713	89596714	rs12448464	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	16q24.3	MC1R	rs12448464-A	0.356483	3E-262				Affymetrix, Illumina [NR] (imputed)	N
1268	chr16	89608701	89608702	rs11642231	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	16q24.3	NR	rs11642231-A	0.369	7E-14		0.00839673	[0.0062-0.0106] unit decrease	NR [9732723] (imputed)	N
1268	chr16	89608701	89608702	rs11642231	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	16q24.3	NR	rs11642231-A	0.369	3E-9		0.015598343	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1268	chr16	89608701	89608702	rs11642231	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	16q24.3	NR	rs11642231-A	0.377	3E-10		0.00950483	[0.0065-0.0125] unit increase	NR [9732723] (imputed)	N
1268	chr16	89609417	89609418	rs34753377	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q24.3	NR	rs34753377-T	NR	9E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
1268	chr16	89610345	89610346	rs28592777	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs28592777-T	0.007095	2E-14		0.51	[0.38-0.64] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89613122	89613123	rs2292954	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic systolic blood pressure minus ambulatory systolic blood pressure)	206 Finnish ancestry individuals	NA	16q24.3	SPG7	rs2292954-G	0.11	2E-6		6.2	[3.65-8.75] unit increase	Illumina [629414]	N
1268	chr16	89623250	89623251	rs138806649	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs138806649-A	0.002748	7E-18		0.94	[0.72-1.16] unit decrease	NR [11842647] (imputed)	N
1268	chr16	89623250	89623251	rs138806649	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs138806649-A	0.00238	1E-9		0.26	[0.18-0.34] unit increase	NR [11842647] (imputed)	N
1268	chr16	89625226	89625227	rs67689854	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs67689854-C	NR	1E-37		2.22658	[1.89-2.57] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1268	chr16	89625226	89625227	rs67689854	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	SPG7, RPL13	rs67689854-?		8E-11	(Hair color (red))	2.2847793	[1.74-2.83] unit increase	Illumina [9499600] (imputed)	N
1268	chr16	89625226	89625227	rs67689854	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	16q24.3	NR	rs67689854-C		3E-6		0.0681	[0.03-0.106] SD units increase	NR [10700000] (imputed)	N
1268	chr16	89630629	89630630	rs12932337	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	16q24.3	NR	rs12932337-C	0.8301	8E-11		0.034	[0.024-0.044] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1268	chr16	89631997	89631998	rs67723215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs67723215-C	NR	2E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1268	chr16	89632724	89632725	rs12932628	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	16q24.3	RPL13	rs12932628-G	0.513	7E-9		0.94459	[0.93-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1268	chr16	89641623	89641624	rs145590108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	16q24.3		rs145590108-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1268	chr16	89641623	89641624	rs145590108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	16q24.3		rs145590108-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1268	chr16	89644000	89644001	rs455527	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q24.3	NR	rs455527-C	NR	4E-15		0.0409	[0.031-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1268	chr16	89644000	89644001	rs455527	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	16q24.3	CPNE7	rs455527-T	0.9374	3E-8		0.0203	[0.013-0.028] unit increase	Illumina [246328]	N
1268	chr16	89645436	89645437	rs369230	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	16q24.3		rs369230-G	0.308	2E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1268	chr16	89645436	89645437	rs369230	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	16q24.3	CPNE7	rs369230-T	0.695	3E-9		0.0237	[0.016-0.032] unit increase	Illumina [~ 250000] (imputed)	N
1268	chr16	89645436	89645437	rs369230	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	16q24.3	NR	rs369230-T	0.711	3E-10		0.0109763	[0.0076-0.0144] unit increase	NR [9732723] (imputed)	N
1268	chr16	89645436	89645437	rs369230	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	MC1R	rs369230-G	NR	1E-522		0.469	[0.34-0.6] unit increase	Affymetrix [8351141] (imputed)	N
1268	chr16	89645436	89645437	rs369230	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	16q24.3	CPNE7	rs369230-G	0.309196	7E-10		0.025845	[0.018-0.034] unit increase	Affymetrix [641018] (imputed)	N
1268	chr16	89646022	89646023	rs34652781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q24.3	Intergenic	rs34652781-T	0.801	4E-13	(MTAG)	0.0209	[0.015-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1268	chr16	89646600	89646601	rs78329217	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	16q24.3	NR	rs78329217-?	NR	9E-6		0.103621855	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1268	chr16	89648280	89648281	rs76751818	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs76751818-?		5E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1268	chr16	89652964	89652965	rs558363243	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs558363243-A	0.003855	7E-22		0.91	[0.72-1.1] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89667336	89667337	rs154659	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	16q24.3	MC1R	rs154659-C	NR	7E-8		0.14	[0.08-0.20] tanning ability score increase	Illumina [528173]	N
1269	chr16	89672811	89672812	rs8064126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q24.3	Intergenic	rs8064126-A	0.6559	9E-11	(MTAG)	0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr16	89673075	89673076	rs56164821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q24.3	Intergenic	rs56164821-A	0.6566	1E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1269	chr16	89675318	89675319	rs4785698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q24.3	DPEP1	rs4785698-G	NR	2E-8		0.023189	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1269	chr16	89681118	89681119	rs187989634	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	16q24.3	NR	rs187989634-C	NR	9E-7		0.2383	[0.14-0.33] SD units decrease	NR [10700000] (imputed)	N
1269	chr16	89682005	89682006	rs460105	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16q24.3	DPEP1	rs460105-T		7E-7		0.323	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr16	89682005	89682006	rs460105	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16q24.3	DPEP1	rs460105-T		9E-10		0.26	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr16	89682005	89682006	rs460105	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	16q24.3	DPEP1	rs460105-T		5E-8	(EA)	0.253	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr16	89682005	89682006	rs460105	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	16q24.3	DPEP1	rs460105-T		4E-12		0.178	unit increase	Affymetrix [at least 2696785] (imputed)	N
1269	chr16	89682189	89682190	rs57856222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	16q24.3		rs57856222-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1269	chr16	89687376	89687377	rs62068711	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.3	DPEP1	rs62068711-G	0.860418	2E-12	(cys-gly, oxidized)	0.232	[0.17-0.3] unit decrease	Illumina [13039987] (imputed)	N
1269	chr16	89687406	89687407	rs2280374	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs2280374-?	NR	8E-55		1.29314	[1.26-1.33]	NR [685523]	N
1269	chr16	89687406	89687407	rs2280374	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	16q24.3		rs2280374-?	NR	2E-24		1.4552	[1.38-1.53]	NR [674885]	N
1269	chr16	89687406	89687407	rs2280374	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16q24.3		rs2280374-?	NR	2E-17		1.09864	[1.08-1.12]	NR [688737]	N
1269	chr16	89687702	89687703	rs2280371	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs2280371-A	0.00217	3E-10		0.8	[0.55-1.05] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89691141	89691142	rs258341	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP1	5,364 Icelandic ancestry individuals	NA	16q24.3		rs258341-T	0.3622	5E-80		0.352252	[0.32-0.39] unit decrease	Illumina [7506463] (imputed)	N
1269	chr16	89691141	89691142	rs258341	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.3	DPEP1	rs258341-T	0.492761	1E-32	(cysteinylglycine)	0.272	[0.23-0.32] unit increase	Illumina [13039987] (imputed)	N
1269	chr16	89691768	89691769	rs12930346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs12930346-T	NR	3E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1269	chr16	89691768	89691769	rs12930346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs12930346-T	NR	3E-12		0.0176	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1269	chr16	89691768	89691769	rs12930346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs12930346-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1269	chr16	89693760	89693761	rs453528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	16q24.3		rs453528-C	NR	2E-23		0.0194	[0.016-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1269	chr16	89697791	89697792	rs2460451	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16q24.3	DPEP1	rs2460451-A	0.45	4E-34	(X - 18889 )	0.362	[0.3-0.42] unit decrease	Illumina [7750367] (imputed)	N
1269	chr16	89698069	89698070	rs2250598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	16q24.3	DPEP1	rs2250598-T	0.435744	6E-35		0.027675152	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr16	89698069	89698070	rs2250598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	16q24.3	DPEP1	rs2250598-T	0.435711	2E-36		0.028300509	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1269	chr16	89698069	89698070	rs2250598	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16q24.3	DPEP1	rs2250598-T	0.46	4E-20	(picolinate)	0.226	[0.18-0.27] unit increase	Illumina [7750367] (imputed)	N
1269	chr16	89698751	89698752	rs420332	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16q24.3	DPEP1	rs420332-T	0.46	9E-25	(cysteinylglycine disulfide)	0.194	[0.16-0.23] unit decrease	Illumina [7750367] (imputed)	N
1269	chr16	89698751	89698752	rs420332	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	16q24.3	DPEP1	rs420332-T	0.46	1E-99	(prolylglycine)	0.77	[0.7-0.84] unit decrease	Illumina [7750367] (imputed)	N
1269	chr16	89698985	89698986	rs78961851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	16q24.3		rs78961851-C	NR	1E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1269	chr16	89698985	89698986	rs78961851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs78961851-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1269	chr16	89698985	89698986	rs78961851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs78961851-?		4E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1269	chr16	89699522	89699523	rs12920969	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	16q24.3	DPEP1	rs12920969-A	0.432	9E-13		0.0029	[0.0021-0.0037] unit decrease	Affymetrix [NR] (imputed)	N
1269	chr16	89700746	89700747	rs2460449	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	16q24.3	DPEP1	rs2460449-A	0.431	4E-9		0.38	[0.16-0.6] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1269	chr16	89700880	89700881	rs2460448	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	16q24.3	DPEP1	rs2460448-G	0.562682	4E-14		0.00174204	[0.0013-0.0022] unit decrease	Affymetrix [13995440] (imputed)	N
1269	chr16	89700880	89700881	rs2460448	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	16q24.3	DPEP1	rs2460448-A	NR	4E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1269	chr16	89700880	89700881	rs2460448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	16q24.3		rs2460448-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1269	chr16	89702619	89702620	rs2070992	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.3	DPEP1	rs2070992-G	0.785396	3E-30	(cysteinylglycine)	0.333	[0.28-0.39] unit decrease	Illumina [13039987] (imputed)	N
1269	chr16	89703423	89703424	rs445537	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	16q24.3		rs445537-A	0.532598	2E-13		0.026228	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
1269	chr16	89703423	89703424	rs445537	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	16q24.3	NR	rs445537-G	NR	2E-7		0.01055	[0.0065-0.0146] unit decrease	Illumina [~ 540852]	N
1269	chr16	89703740	89703741	rs148240484	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	16q24.3	DPEP1	rs148240484-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1269	chr16	89703740	89703741	rs148240484	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	16q24.3	DPEP1	rs148240484-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1269	chr16	89703740	89703741	rs148240484	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	16q24.3	DPEP1	rs148240484-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1269	chr16	89703752	89703753	rs150320659	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	16q24.3	DPEP1	rs150320659-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1269	chr16	89703796	89703797	rs34422500	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	16q24.3	NR	rs34422500-T	0.1304	7E-14		0.002444	[0.0018-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1269	chr16	89703958	89703959	rs142226072	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	16q24.3	DPEP1	rs142226072-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1269	chr16	89704364	89704365	rs1126464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	16q24.3		rs1126464-C	NR	7E-56		0.0226	[0.02-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	16q24.3		rs1126464-C	0.322496	2E-39		0.0283615	[0.024-0.033] unit increase	Illumina [13479295] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.3	DPEP1	rs1126464-G	0.702114	2E-122	(cys-gly, oxidized)	0.601	[0.55-0.65] unit decrease	Illumina [13039987] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs1126464-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	16q24.3	DPEP1	rs1126464-?	NR	5E-47		0.044015646	[0.038-0.05] unit increase	Illumina [27896057] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	16q24.3	NR	rs1126464-G	0.76	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1269	chr16	89704364	89704365	rs1126464	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	16q24.3	DPEP1	rs1126464-C	0.215	2E-13		0.24	[0.18-0.3] unit increase	Illumina [247039]	N
1269	chr16	89704364	89704365	rs1126464	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	16q24.3	DPEP1	rs1126464-C	0.2411	8E-6		0.2354	[0.13-0.34] mmHg increase	Illumina [242296]	N
1269	chr16	89704364	89704365	rs1126464	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	16q24.3	DPEP1	rs1126464-C	0.2378	3E-7		5.129	z score increase	Illumina [242296]	N
1269	chr16	89704364	89704365	rs1126464	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	16q24.3	DPEP1	rs1126464-C	0.2561	6E-15		0.249	mmHg increase	Illumina [242296]	N
1269	chr16	89706242	89706243	rs150576976	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs150576976-A	0.002141	8E-12		0.87	[0.62-1.12] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89706991	89706992	rs2052868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3	CHMP1A, DPEP1	rs2052868-T	0.263538	9E-21		0.026052767	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr16	89707492	89707493	rs55839877	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	DPEP1	rs55839877-C	0.1065	1E-13		1.46	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89708002	89708003	rs154656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	16q24.3	CHMP1A	rs154656-A	0.4269	3E-24		0.003	[0.0024-0.0036] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1269	chr16	89708002	89708003	rs154656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	16q24.3	CHMP1A	rs154656-A	0.4398	2E-24		0.0031	[0.0025-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1269	chr16	89708002	89708003	rs154656	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	16q24.3	CHMP1A	rs154656-A	0.425003	5E-10		0.04966361	[0.034-0.065] unit decrease	Affymetrix [7288503] (imputed)	N
1269	chr16	89708095	89708096	rs154657	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	16q24.3	DPEP1	rs154657-A	0.47	2E-43		0.0963	[0.083-0.11] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
1269	chr16	89708223	89708224	rs164749	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	16q24.3	CHMP1A	rs164749-G	0.430761	2E-15		0.048410926	[0.036-0.06] unit decrease	Affymetrix [7288503] (imputed)	N
1269	chr16	89708291	89708292	rs164748	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	16q24.3	DPEP1	rs164748-G	NR	8E-6		0.593	[0.34-0.85] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1269	chr16	89708291	89708292	rs164748	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	16q24.3	DPEP1	rs164748-C	0.53	2E-8		0.0046	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1269	chr16	89708982	89708983	rs148271621	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs148271621-T	0.001711	3E-9		0.8	[0.53-1.07] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89709018	89709019	rs164746	30339177	Shane B	2018-10-19	Am J Clin Nutr	The 677C->T variant of MTHFR is the major genetic modifier of biomarkers of folate status in a young, healthy Irish population.	Plasma homocysteine levels	2,232 Irish ancestry individuals	NA	16q24.3	CHMP1A	rs164746-?	NR	4E-8		0.01776	[0.011-0.024] ?mol/L increase	Illumina [758443]	N
1269	chr16	89709663	89709664	rs164745	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	CHMP1A	rs164745-T	NR	7E-206		0.293	[0.19-0.4] unit decrease	Affymetrix [8351141] (imputed)	N
1269	chr16	89710187	89710188	rs58860475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	16q24.3		rs58860475-C	0.453722	2E-8		0.0191832	[0.013-0.026] unit increase	Illumina [13477769] (imputed)	N
1269	chr16	89710656	89710657	rs57641885	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs57641885-C	0.004574	1E-9		0.19	[0.13-0.25] unit increase	NR [11842647] (imputed)	N
1269	chr16	89712888	89712889	rs460879	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	16q24.3	CHMP1A	rs460879-T	0.430755	8E-17		0.06785755	[0.052-0.084] unit decrease	Affymetrix [7288503] (imputed)	N
1269	chr16	89713937	89713938	rs11648089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs11648089-?	NR	1E-144				NR [~ 8900000] (imputed)	N
1269	chr16	89713937	89713938	rs11648089	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	CHMP1A	rs11648089-C	NR	1E-129		0.358	[0.21-0.5] unit decrease	Affymetrix [8351141] (imputed)	N
1269	chr16	89713968	89713969	rs428232	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		16q24.3	DPEP1	rs428232-?	NR	3E-7				Affymetrix, Illumina [up to 10971307] (imputed)	N
1269	chr16	89714021	89714022	rs2460457	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	16q24.3	CHMP1A	rs2460457-C	0.5237	7E-12		0.1835	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1269	chr16	89714980	89714981	rs4968051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs4968051-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1269	chr16	89715154	89715155	rs62068737	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62068737-?		4E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1269	chr16	89715647	89715648	rs2437957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	16q24.3		rs2437957-A	NR	8E-10		0.0492	[0.034-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1269	chr16	89715647	89715648	rs2437957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	16q24.3		rs2437957-A	NR	6E-15		0.0479	[0.036-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1269	chr16	89715812	89715813	rs201479143	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	CHMP1A	rs201479143-T	0.001465	7E-50		11.37	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89716221	89716222	rs4785699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.3		rs4785699-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1269	chr16	89716492	89716493	rs35749174	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs35749174-G	NR	2E-75		4.10374	[3.67-4.54] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1269	chr16	89716492	89716493	rs35749174	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	16q24.3	CHMP1A	rs35749174-A	0.0997849	2E-67		0.28426015	[0.25-0.32] unit increase	Affymetrix [7260263] (imputed)	N
1269	chr16	89717396	89717397	rs467357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	16q24.3		rs467357-G	NR	2E-16		0.0648	[0.049-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1269	chr16	89719954	89719955	rs56397046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	16q24.3		rs56397046-T	NR	4E-16		0.0213	[0.016-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1269	chr16	89726034	89726035	rs154663	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	16q24.3	NR	rs154663-?	NR	2E-6		0.03306036	[0.02-0.047] unit decrease	Illumina [34656550] (imputed)	N
1269	chr16	89726034	89726035	rs154663	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	16q24.3	C16orf55	rs154663-T	0.29	9E-7		0.084	[0.051-0.117] unit increase	Affymetrix [1532051] (imputed)	N
1269	chr16	89732237	89732238	rs258317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	16q24.3		rs258317-T	NR	2E-11		0.055	[0.039-0.071] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1269	chr16	89732237	89732238	rs258317	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	16q24.3	C16orf55	rs258317-T	0.427246	2E-11		0.056158982	[0.04-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1269	chr16	89734348	89734349	rs447735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	16q24.3		rs447735-C	NR	4E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1269	chr16	89734348	89734349	rs447735	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	CDK10, CHMP1A, DPEP1, SPATA2L, SPATA33	rs447735-C		3E-22		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1269	chr16	89734348	89734349	rs447735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	16q24.3	SPATA33	rs447735-C	0.4186	1E-9		0.02194109	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1269	chr16	89734830	89734831	rs2377058	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q24.3	C16orf55	rs2377058-A	0.6595	9E-7	(EA,men)	0.0266	[0.016-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr16	89734830	89734831	rs2377058	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	16q24.3	C16orf55	rs2377058-A	0.6595	7E-10	(EA)	0.0232	[0.016-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1269	chr16	89735070	89735071	rs117418297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs117418297-T	0.0710469	4E-10				Affymetrix, Illumina [24588908] (imputed)	N
1269	chr16	89735070	89735071	rs117418297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	16q24.3	NR	rs117418297-T	0.091639	2E-12		0.022655	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	16q24.3		rs35063026-C	NR	2E-14		0.741063	[0.55-0.93] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	16q24.3		rs35063026-T	NR	2E-6		0.00869548	[0.0051-0.0123] years increase	NR [7400000] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	16q24.3		rs35063026-T	NR	6E-8		0.00631321	[0.004-0.0086] years decrease	NR [7400000] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	16q24.3		rs35063026-T	NR	2E-17		0.0126847	[0.0098-0.0156] years decrease	NR [7400000] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	16q24.3		rs35063026-T	NR	2E-15		0.05066491	[0.038-0.063] years increase	NR [7400000] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	SPATA33	rs35063026-?		3E-8	(Freckling phototype score)	0.8052	[0.52-1.09] unit decrease	Illumina [9499600] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	16q24.3	SPATA33	rs35063026-T	NR	1E-20	(adjusted for rs4268748)	1.33	[1.26-1.42]	Affymetrix [9610468] (imputed)	N
1269	chr16	89736156	89736157	rs35063026	25705849	Jacobs LC	2015-02-23	J Invest Dermatol	A Genome-Wide Association Study Identifies the Skin Color Genes IRF4, MC1R, ASIP, and BNC2 Influencing Facial Pigmented Spots.	Facial pigmentation	2,844 European ancestry individuals	NA	16q24.3	MC1R, C16orf55, SPATA33	rs35063026-T	0.07	9E-15		20.29	[15.59-24.99] unit increase	Illumina [6846125] (imputed)	N
1269	chr16	89737835	89737836	rs560081714	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs560081714-C	0.003164	1E-11		0.25	[0.18-0.32] unit increase	NR [11842647] (imputed)	N
1269	chr16	89738345	89738346	rs7187910	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	16q24.3	SPATA2L, RP11-368I7.4	rs7187910-G	0.5824	3E-8		5.515	NR z score increase	Illumina [26237160] (imputed)	N
1269	chr16	89738589	89738590	rs75225321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	16q24.3	SPATA33	rs75225321-T	0.226865	1E-12		0.018878354	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1269	chr16	89738589	89738590	rs75225321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	16q24.3	SPATA33	rs75225321-T	0.2274	7E-11		0.02760095	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1269	chr16	89739902	89739903	rs2118193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	16q24.3		rs2118193-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1269	chr16	89740872	89740873	rs423135	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	16q24.3	DPEP1	rs423135-G	0.429375	5E-39	(DPEP1, 8794_13_3)	0.31279975	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
1269	chr16	89741495	89741496	rs12443954	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	16q24.3	NR	rs12443954-A		1E-6	(Modelling analysis)	1.08	[1.04-1.11]	NR [1252901] (imputed)	N
1269	chr16	89741908	89741909	rs12444609	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	16q24.3	C16orf55, BC031657	rs12444609-A	0.633512	3E-11	(picolinate)	0.158	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Light brown (UKB data field 1747_3)	185,000 European ancestry cases, 270,164 European ancestry controls	NA	16q24.3		rs116927526-T	0.00457	2E-15		0.27	[0.21-0.33] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs116927526-T	0.005141	2E-71		0.62	[0.55-0.69] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Black (UKB data field 1747_5)	20,700 European ancestry cases, 434,464 European ancestry controls	NA	16q24.3		rs116927526-T	0.004277	7E-14		0.65	[0.48-0.82] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q24.3	CDK10	rs116927526-T	0.0032	8E-13		1.6852039	NR	Affymetrix, Illumina [NR] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	CDK10	rs116927526-T	0.004391	2E-308		57.09	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	CDK10	rs116927526-T	0.004391	2E-8		2.353	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89743626	89743627	rs116927526	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	CDK10	rs116927526-T	0.004391	2E-49		2.283	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89744299	89744300	rs146222044	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs146222044-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1269	chr16	89744299	89744300	rs146222044	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs146222044-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1269	chr16	89749823	89749824	rs542514563	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs542514563-G	0.003055	5E-18		0.9	[0.7-1.1] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89751919	89751920	rs3751699	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	16q24.3	NR	rs3751699-?		7E-6		2.88	[1.81-4.57]	Illumina [539473] (imputed)	N
1269	chr16	89753098	89753099	rs543938798	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	16q24.3	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs543938798-?		2E-10				NR [7428630] (imputed)	N
1269	chr16	89754254	89754255	rs258324	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	16q24.3	CDK10	rs258324-T	0.27	4E-23		0.054	[0.04-0.068] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1269	chr16	89754443	89754444	rs12924138	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	16q24.3	NR	rs12924138-T	0.3887	1E-8		0.0146441	[0.0096-0.0197] unit increase	Affymetrix [3505788] (imputed)	N
1269	chr16	89755215	89755216	rs2075880	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP1	5,364 Icelandic ancestry individuals	NA	16q24.3		rs2075880-G	0.4508	6E-54		0.281551	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
1269	chr16	89755902	89755903	rs258322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	16q24.3		rs258322-G	NR	3E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1269	chr16	89755902	89755903	rs258322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	16q24.3	CDK10	rs258322-A	NR	3E-11		0.0317711	[0.022-0.041] unit decrease	Affymetrix [321114] (imputed)	N
1269	chr16	89755902	89755903	rs258322	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	16q24.3	MC1R	rs258322-A	0.09	3E-27		1.67	[NR]	Illumina [at least 560000] (imputed)	N
1269	chr16	89755902	89755903	rs258322	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	16q24.3	CDK10	rs258322-A	0.09	2E-8		1.67	[NR]	Illumina [at least 560000] (imputed)	N
1269	chr16	89755902	89755903	rs258322	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	16q24.3	MC1R	rs258322-A		2E-9		1.5	[1.31-1.71]	Affymetrix, Illumina [1579307] (imputed)	N
1269	chr16	89755902	89755903	rs258322	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	16q24.3	MC1R	rs258322-A	0.11	3E-27		1.7	[1.54-1.87]	Illumina [594997]	N
1269	chr16	89755902	89755903	rs258322	19578364	Bishop DT	2009-07-05	Nat Genet	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	16q24.3	MC1R	rs258322-A	0.09	3E-27		1.67	[1.52-1.83]	Illumina [~ 317000]	N
1269	chr16	89755902	89755903	rs258322	18483556	Han J	2008-05-16	PLoS Genet	A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.	Black vs. red hair color	2,287 European ancestry female individuals	8,465 European ancestry individuals	16q24.3	MC1R	rs258322-T	NR	2E-23		0.36	[0.28-0.44] hair color score increase	Illumina [528173]	N
1269	chr16	89756472	89756473	rs258321	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	16q24.3	NR	rs258321-G	0.429	2E-10		0.0157962	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1269	chr16	89759717	89759718	rs775505410	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs775505410-C	0.001585	2E-22		0.6	[0.48-0.72] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89760491	89760492	rs465507	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	16q24.3	CDK10	rs465507-C	0.63	9E-6		0.76	[0.43-1.09] g/day increase	Affymetrix [10353649] (imputed)	N
1269	chr16	89760651	89760652	rs2162943	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	16q24.3	NR	rs2162943-?	NR	1E-13				Affymetrix, Illumina [6211016] (imputed)	N
1269	chr16	89762089	89762090	rs56242003	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs56242003-A	0.005512	1E-11		0.19	[0.13-0.25] unit increase	NR [11842647] (imputed)	N
1269	chr16	89762914	89762915	rs1045814	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs1045814-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
1269	chr16	89762920	89762921	rs465552	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs465552-T	0.004224	4E-28		1.01	[0.83-1.19] unit decrease	NR [11842647] (imputed)	N
1269	chr16	89765045	89765046	rs35432452	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	SPATA2L	rs35432452-G	0.1462	8E-23		1.125	NR	Affymetrix [9154080] (imputed)	N
1269	chr16	89772423	89772424	rs9931440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	16q24.3	SPATA2L	rs9931440-C	0.4526	7E-14		0.02718204	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1269	chr16	89772618	89772619	rs4785587	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	16q24.3	NR	rs4785587-A	0.523	6E-13		0.0160173	[0.012-0.02] unit decrease	NR [9732723] (imputed)	N
1269	chr16	89781166	89781167	rs139714289	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs139714289-A	0.004241	3E-19		0.29	[0.23-0.35] unit increase	NR [11842647] (imputed)	N
1269	chr16	89781755	89781756	rs34714188	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	16q24.3	VPS9D1	rs34714188-A	0.099	1E-11	(Melanocyte protein PMEL, PMEL.6472.40.3)	0.28	[0.2-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1270	chr16	89784991	89784992	rs57119673	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	16q24.3	NR	rs57119673-G	0.440524	8E-16		0.0251972	[0.019-0.031] unit increase	NR [19129689] (imputed)	N
1270	chr16	89784991	89784992	rs57119673	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs57119673-G	NR	2E-387		0.371	[0.26-0.48] unit increase	Affymetrix [8351141] (imputed)	N
1270	chr16	89785241	89785242	rs113661672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	16q24.3	VPS9D1	rs113661672-T	0.407321	7E-35		0.028562099	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr16	89786120	89786121	rs34141697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	16q24.3	VPS9D1	rs34141697-T	0.24318	7E-23		0.025909277	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr16	89786648	89786649	rs111836360	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	16q24.3		rs111836360-A	0.594	5E-25		0.12	[-0.14--0.09] % decrease	Affymetrix [NR] (imputed)	N
1270	chr16	89786760	89786761	rs56283750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16q24.3		rs56283750-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1270	chr16	89786854	89786855	rs3809646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	16q24.3	ZNF276	rs3809646-T	0.592413	6E-24		0.0284679	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89786854	89786855	rs3809646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	16q24.3	ZNF276	rs3809646-T	0.592411	7E-18		0.01957544	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89788767	89788768	rs116853582	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs116853582-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1270	chr16	89791278	89791279	rs35026726	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs35026726-T	NR	4E-61		1.5470297	NR	Affymetrix [7846216] (imputed)	N
1270	chr16	89792855	89792856	rs12925026	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	MC1R	rs12925026-C	NR	5E-24		1.3333333	[1.27-1.41]	Affymetrix [5734850] (imputed)	N
1270	chr16	89794050	89794051	rs72807539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	16q24.3		rs72807539-A	NR	9E-13		0.0217	[0.016-0.028] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1270	chr16	89794818	89794819	rs35034309	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	16q24.3	NR	rs35034309-A	0.058	5E-6	(IFNgamma_STAT1_of_CD4p_T)			Illumina [5084123] (imputed)	N
1270	chr16	89795304	89795305	rs74606487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	16q24.3		rs74606487-G	NR	4E-8		0.0148	[0.0095-0.0201] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1270	chr16	89795304	89795305	rs74606487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q24.3	ZNF276	rs74606487-G	NR	3E-8		0.0224046	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1270	chr16	89795304	89795305	rs74606487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.3		rs74606487-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1270	chr16	89795796	89795797	rs11640734	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	16q24.3	NR	rs11640734-G		5E-7		0.1187	[0.071-0.166] SD units increase	NR [10700000] (imputed)	N
1270	chr16	89796016	89796017	rs34659644	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	16q24.3		rs34659644-A	0.0794972	1E-15		1.23		Affymetrix [15611556] (imputed)	N
1270	chr16	89796580	89796581	rs190391690	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs190391690-T	0.00171	6E-11		0.93	[0.65-1.21] unit decrease	NR [11842647] (imputed)	N
1270	chr16	89800057	89800058	rs3803689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q24.3	Intergenic	rs3803689-T	0.3882	3E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1270	chr16	89801951	89801952	rs11649196	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	16q24.3	ZNF276	rs11649196-A	0.154635	5E-10		1.0752687	[1.05-1.1]	Affymetrix [7600000] (imputed)	N
1270	chr16	89804623	89804624	rs17227424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q24.3	NR	rs17227424-C	NR	2E-12		0.041	[0.029-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1270	chr16	89806342	89806343	rs11647746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	16q24.3		rs11647746-A	NR	7E-13		0.0229	[0.017-0.029] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1270	chr16	89812138	89812139	rs12923751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.3	FANCA	rs12923751-G	0.240272	3E-9		0.018994374	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1270	chr16	89812581	89812582	rs113548871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs113548871-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1270	chr16	89815048	89815049	rs1800347	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	FANCA	rs1800347-C	0.04798	3E-221		4.521	NR	Affymetrix [9154080] (imputed)	N
1270	chr16	89815151	89815152	rs17233497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	16q24.3	NR	rs17233497-A	NR	4E-9		0.0248	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1270	chr16	89816814	89816815	rs150924516	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	FANCA	rs150924516-T	0.006087	3E-9		2.52	NR	Affymetrix [9154080] (imputed)	N
1270	chr16	89816890	89816894	rs765782040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	16q24.3	FANCA	rs765782040-C	0.191593	2E-16		0.023425378	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89818088	89818089	rs9926296	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	16q24.3	MC1R	rs9926296-A	0.54	2E-13		1.27	[NR]	Illumina [495821]	N
1270	chr16	89818264	89818265	rs11646910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	16q24.3	FANCA	rs11646910-A	0.106371	2E-9		0.022269176	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89818264	89818265	rs11646910	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	FANCA	rs11646910-?	0.8955	2E-12		1.5654352	NR	Affymetrix [9154080] (imputed)	N
1270	chr16	89818339	89818340	rs3743861	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	16q24.3		rs3743861-G	0.58	4E-9				NR [NR] (imputed)	N
1270	chr16	89818339	89818340	rs3743861	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	16q24.3		rs3743861-G	0.58	1E-13		0.011	% increase	NR [NR] (imputed)	N
1270	chr16	89818339	89818340	rs3743861	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	16q24.3	FANCA	rs3743861-G	0.58	7E-13				Affymetrix, Illumina [8002429] (imputed)	N
1270	chr16	89818339	89818340	rs3743861	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	FANCA	rs3743861-C	NR	3E-260		0.299	[0.2-0.4] unit increase	Affymetrix [8351141] (imputed)	N
1270	chr16	89818490	89818491	rs3743860	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	16q24.3	NR	rs3743860-T		9E-11		0.1	[0.061-0.139] unit increase	NR [NR]	N
1270	chr16	89818490	89818491	rs3743860	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	16q24.3	FANCA	rs3743860-?	NR	1E-13		0.0974	[0.072-0.123] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1270	chr16	89818490	89818491	rs3743860	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	16q24.3	FANCA	rs3743860-T	0.583	4E-15		0.102	[0.077-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1270	chr16	89818490	89818491	rs3743860	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	16q24.3	FANCA	rs3743860-T	0.5852	2E-14		0.1101	[0.082-0.138] unit increase	Affymetrix [~ 11900000] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs12931267-C	NR	2E-82		4.2454	[3.81-4.68] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs12931267-?	NR	4E-68		1.32743	[1.3-1.36]	NR [685523]	N
1270	chr16	89818731	89818732	rs12931267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	16q24.3		rs12931267-?	NR	1E-32		1.53336	[1.46-1.6]	NR [674885]	N
1270	chr16	89818731	89818732	rs12931267	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16q24.3		rs12931267-?	NR	1E-21		1.11095	[1.09-1.13]	NR [688737]	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		7E-9	(Fitzpatrick phototype score)	0.2496	[0.17-0.33] unit decrease	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		4E-10	(Phototype score)	4.969	[3.42-6.52] unit decrease	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		4E-18	(Hair color (red))	3.2180824	[2.61-3.83] unit increase	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		3E-9	(Hair color phototype score)	1.601	[1.07-2.13] unit decrease	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		3E-11	(Hair color (light))	1.3204051	[0.97-1.67] unit increase	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	FANCA	rs12931267-?		2E-17	(Hair color)	0.4416	[0.34-0.54] unit increase	Illumina [9499600] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin sensitivity to sun	2,668 European ancestry individuals	NA	16q24.3	MC1R	rs12931267-G	0.091	8E-23		0.441	[0.5292-0.3528] unit decrease	Illumina [NR] (imputed)	N
1270	chr16	89818731	89818732	rs12931267	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	16q24.3	MC1R	rs12931267-G	0.08	5E-87	(red hair)	0.56	[NR] unit increase	Illumina [535076]	N
1270	chr16	89818731	89818732	rs12931267	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	16q24.3	MC1R	rs12931267-G	0.08	3E-10	(hair color)	0.56	[NR] unit decrease	Illumina [535076]	N
1270	chr16	89818731	89818732	rs12931267	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	16q24.3	MC1R	rs12931267-G	0.08	8E-62		1.88	[NR] unit increase	Illumina [535076]	N
1270	chr16	89821154	89821155	rs139414522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs139414522-?	NR	2E-86				NR [~ 8900000] (imputed)	N
1270	chr16	89822756	89822757	rs11646229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	16q24.3	NR	rs11646229-A	0.183708	4E-15				Affymetrix, Illumina [23467995] (imputed)	N
1270	chr16	89822756	89822757	rs11646229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	16q24.3	NR	rs11646229-A	0.188089	4E-18		0.020843	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1270	chr16	89823508	89823509	rs185525869	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs185525869-A	0.0038	4E-20		0.87	[0.69-1.05] unit decrease	NR [11842647] (imputed)	N
1270	chr16	89844042	89844043	rs1006548	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs1006548-T	NR	2E-8		1.119	[1.076-1.164]	Affymetrix [7846216] (imputed)	N
1270	chr16	89844042	89844043	rs1006548	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	FANCA	rs1006548-C	NR	4E-205		0.322	[0.21-0.44] unit decrease	Affymetrix [8351141] (imputed)	N
1270	chr16	89844397	89844398	rs17232777	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs17232777-T	0.001862	2E-14		1.05	[0.78-1.32] unit decrease	NR [11842647] (imputed)	N
1270	chr16	89845196	89845197	rs183513839	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs183513839-A	0.004899	6E-12		0.21	[0.15-0.27] unit increase	NR [11842647] (imputed)	N
1270	chr16	89846676	89846677	rs75570604	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs75570604-G	NR	7E-80		4.18798	[3.75-4.62] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1270	chr16	89846676	89846677	rs75570604	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	16q24.3		rs75570604-G	NR	7E-14		0.713294	[0.53-0.9] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1270	chr16	89846676	89846677	rs75570604	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	16q24.3	MC1R	rs75570604-G	0.9345396	6E-85				Affymetrix, Illumina [NR] (imputed)	N
1270	chr16	89846676	89846677	rs75570604	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	16q24.3	MC1R	rs75570604-?	NR	2E-45				Affymetrix, Illumina [7850345] (imputed)	N
1270	chr16	89846676	89846677	rs75570604	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	16q24.3	FANCA	rs75570604-G	NR	2E-7		0.187841	[0.12-0.26] unit decrease	Illumina [at least 950000] (imputed)	N
1270	chr16	89849740	89849741	rs544957009	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs544957009-A	0.001175	1E-9		1.03	[0.7-1.36] unit decrease	NR [11842647] (imputed)	N
1270	chr16	89851032	89851033	rs16966142	21490707	Cornelis MC	2011-04-07	PLoS Genet	Genome-wide meta-analysis identifies regions on 7p21 (AHR) and 15q24 (CYP1A2) as determinants of habitual caffeine consumption.	Caffeine consumption	47,431 European ancestry individuals	NA	16q24.3	NR	rs16966142-T	0.08	6E-6		0.118	[0.07-0.17] mg/day increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1270	chr16	89853116	89853117	rs2238529	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	FANCA	rs2238529-C	NR	6E-45		0.128	[0.061-0.195] unit increase	Affymetrix [8351141] (imputed)	N
1270	chr16	89854828	89854829	rs1968109	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	16q24.3	NR	rs1968109-C	0.684574	2E-9		0.0121414	[0.0082-0.0161] unit increase	NR [NR]	N
1270	chr16	89859719	89859720	rs144352354	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs144352354-A	0.008627	2E-33		0.27	[0.22-0.32] unit increase	NR [11842647] (imputed)	N
1270	chr16	89859752	89859753	rs12921383	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	16q24.3	FANCA, DPEP1	rs12921383-T	0.87	8E-11		0.09	[0.063-0.117] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
1270	chr16	89861569	89861570	rs17232491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	16q24.3		rs17232491-A	NR	8E-10		0.0248	[0.017-0.033] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1270	chr16	89862154	89862155	rs17226082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	16q24.3		rs17226082-C	NR	2E-10		0.0257	[0.018-0.034] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1270	chr16	89872169	89872170	rs140936156	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs140936156-A	0.001621	2E-11		0.98	[0.69-1.27] unit decrease	NR [11842647] (imputed)	N
1270	chr16	89872969	89872970	rs12449000	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	16q24.3	NR	rs12449000-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1270	chr16	89873172	89873173	rs138804614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs138804614-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1270	chr16	89874084	89874085	rs17225866	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FANCA	rs17225866-?	NR	4E-9		1.80358	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1270	chr16	89874755	89874756	rs17232246	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs17232246-A	2.279E-4	8E-10		2.35	[1.6-3.1] unit increase	NR [11842647] (imputed)	N
1270	chr16	89879049	89879050	rs148559047	34754074	Grgic O	2021-11-09	Commun Biol	CYP11B1 variants influence skeletal maturation via alternative splicing.	Skeletal age	4,557 European, African, Asian and unknown ancestry individuals	NA	16q24.3		rs148559047-A	0.03	6E-7		0.32	[0.2-0.44] decrease	Illumina [9806907] (imputed)	N
1270	chr16	89883006	89883007	rs1800282	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	FANCA	rs1800282-T		2E-11		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1270	chr16	89884126	89884127	rs36233537	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	FANCA	rs36233537-G	NR	2E-47		0.418	[0.2-0.63] unit decrease	Affymetrix [8351141] (imputed)	N
1270	chr16	89884309	89884310	rs76888998	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q24.3	Intergenic	rs76888998-G	0.9201	1E-17		0.0308	[0.024-0.038] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1270	chr16	89885140	89885141	rs780822849	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs780822849-G	0.001475	2E-109		3.34	[3.05-3.63] unit increase	NR [11842647] (imputed)	N
1270	chr16	89886518	89886519	rs34357723	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	FANCA, SPIRE2	rs34357723-T	0.2745	2E-308		9.589	NR	Affymetrix [9154080] (imputed)	N
1270	chr16	89887248	89887249	rs35096708	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	16q24.3	MC1R	rs35096708-G		3E-12		0.1184	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
1270	chr16	89888201	89888201	rs11382300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	16q24.3	SPIRE2	rs11382300-GT	0.447329	7E-13		0.016853174	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89890878	89890879	rs113271242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs113271242-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1270	chr16	89907204	89907205	rs6500458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	16q24.3	SPIRE2	rs6500458-G	0.638839	3E-27		0.028111998	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1270	chr16	89907204	89907205	rs6500458	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	16q24.3	NR	rs6500458-A	0.42	1E-8	(EA)	0.08	[0.053-0.107] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1270	chr16	89907204	89907205	rs6500458	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	16q24.3	NR	rs6500458-A	0.42	1E-8		0.063	[0.041-0.085] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1270	chr16	89908002	89908003	rs1079558	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs1079558-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
1270	chr16	89909400	89909401	rs12599531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs12599531-C	NR	2E-12		0.0175	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1270	chr16	89909400	89909401	rs12599531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	16q24.3	NR	rs12599531-C	NR	1E-13		0.0184	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1270	chr16	89909428	89909429	rs17177912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	16q24.3	NR	rs17177912-G	NR	4E-10		0.0359	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1270	chr16	89911680	89911681	rs17719345	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs17719345-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1270	chr16	89911680	89911681	rs17719345	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs17719345-?		7E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1270	chr16	89912456	89912457	rs9745545	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	16q24.3	SPIRE2	rs9745545-C	0.32784	1E-12		1.1295282	[1.09-1.16]	NR [NR] (imputed)	N
1270	chr16	89913007	89913008	rs12051519	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	SPIRE2	rs12051519-?	0.92135	3E-11		1.7721071	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89916390	89916391	rs12932219	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	SPIRE2	rs12932219-G	NR	4E-335		0.341	[0.24-0.45] unit decrease	Affymetrix [8351141] (imputed)	N
1271	chr16	89921118	89921119	rs12598756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	16q24.3		rs12598756-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1271	chr16	89922504	89922505	rs185450073	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs185450073-T	0.001141	3E-9		1.04	[0.7-1.38] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89933006	89933007	rs72813426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	16q24.3		rs72813426-G	0.25	1E-70		17.78	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr16	89933006	89933007	rs72813426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	16q24.3		rs72813426-G	0.25	6E-22		9.63	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr16	89933006	89933007	rs72813426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	16q24.3		rs72813426-G	0.25	7E-27		10.73	z score increase	Affymetrix [9061022] (imputed)	N
1271	chr16	89933006	89933007	rs72813426	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	16q24.3	NR	rs72813426-G	0.2333	1E-17				NR [9056863] (imputed)	N
1271	chr16	89933006	89933007	rs72813426	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	16q24.3	SPIRE2	rs72813426-G	0.24	2E-14				NR [9312144] (imputed)	N
1271	chr16	89937644	89937645	rs45609834	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	16q24.3	SPIRE2	rs45609834-C	0.083791	1E-9		0.115490526	[0.078-0.153] unit increase	Affymetrix [7260263] (imputed)	N
1271	chr16	89938143	89938144	rs1109334	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	16q24.3	NR	rs1109334-G	NR	9E-6		0.009151	[0.0051-0.0132] unit decrease	Illumina [~ 540852]	N
1271	chr16	89938243	89938244	rs182948919	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs182948919-T	0.01219	2E-33		1.507	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89938348	89938349	rs538371013	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs538371013-A	0.001228	3E-9		0.98	[0.65-1.31] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	16q24.3	TCF25	rs9939914-C	0.250771	2E-25		0.02730529	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	16q24.3	TCF25	rs9939914-C	0.250779	2E-25		0.02745377	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	16q24.3	TCF25	rs9939914-C	0.250725	2E-24		0.026669942	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	16q24.3	TCF25	rs9939914-C	0.250736	3E-27		0.028221592	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	TCF25	rs9939914-C	0.2504	3E-18		1.137	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs9939914-C	0.2504	7E-36		1.14	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	16q24.3	TCF25	rs9939914-C	0.2539	1E-14		0.0322975	[0.024-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	16q24.3	TCF25	rs9939914-C	0.2539	2E-16		0.03446992	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	16q24.3	TCF25	rs9939914-C	0.2539	8E-12		0.02856619	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1271	chr16	89939928	89939929	rs9939914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	16q24.3	TCF25	rs9939914-C	0.2539	4E-13		0.03026111	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1271	chr16	89940385	89940386	rs13332673	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs13332673-T	0.008967	7E-30		0.25	[0.21-0.29] unit increase	NR [11842647] (imputed)	N
1271	chr16	89940385	89940386	rs13332673	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	16q24.3		rs13332673-T	0.01014	2E-9		0.21	[0.14-0.28] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89943628	89943629	rs6500461	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	16q24.3		rs6500461-?	NR	4E-9				NR [9705931] (imputed)	N
1271	chr16	89950298	89950299	rs72477006	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs72477006-C	0.1094	3E-61		2.554	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89951459	89951460	rs112730611	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	16q24.3	SPIRE2, TCF25	rs112730611-T	0.173092	1E-9		0.343308	[0.23-0.45] unit increase	Affymetrix [NR] (imputed)	N
1271	chr16	89952842	89952843	rs13335395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	16q24.3		rs13335395-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1271	chr16	89956705	89956706	rs117243052	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	TCF25	rs117243052-T	0.01225	1E-11		1.574	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89959887	89959888	rs78258966	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs78258966-A	0.007019	1E-13		3.299	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89961956	89961957	rs11641790	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	16q24.3	MC1R	rs11641790-?	NR	4E-6	(gentisic acid)	0.2768932	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1271	chr16	89967513	89967514	rs78498439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	16q24.3	Intergenic	rs78498439-A	0.0687	3E-20	(MTAG)	0.0326	[0.026-0.039] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr16	89967513	89967514	rs78498439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q24.3	Intergenic	rs78498439-A	0.0691	9E-22	(MTAG)	0.0315	[0.025-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr16	89967513	89967514	rs78498439	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	16q24.3	TCF25	rs78498439-?	NR	7E-14		0.079	[0.059-0.100] unit increase	Illumina [12039491] (imputed)	N
1271	chr16	89969592	89969593	rs4785736	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs4785736-C	0.4818	5E-25		1.937	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89972531	89972532	rs11862382	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TCF25	rs11862382-?	0.8669	3E-13		2.7932959	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89975896	89975897	rs546481867	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs546481867-A	0.003661	5E-19		0.31	[0.24-0.38] unit increase	NR [11842647] (imputed)	N
1271	chr16	89979493	89979494	rs8045560	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R, TCF25	rs8045560-C	0.4191	5E-10		7.44	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89983148	89983149	rs144459979	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs144459979-A	0.001756	2E-12		1.02	[0.74-1.3] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89983553	89983554	rs3212350	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs3212350-?	0.581	1E-41		2.252252	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985843	89985844	rs1805005	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805005-T	0.122	3E-243		3.255	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985843	89985844	rs1805005	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	MC1R	rs1805005-T	0.1222	3E-46		1.324	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985843	89985844	rs1805005	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805005-T	0.122	2E-125		1.314	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985912	89985913	rs34474212	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs34474212-C	1.139E-4	9E-14		4.88	[3.6-6.16] unit increase	NR [11842647] (imputed)	N
1271	chr16	89985917	89985918	rs1805006	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805006-T	0.01312	2E-308		22.55	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985917	89985918	rs1805006	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	MC1R	rs1805006-A	0.01312	6E-16		1.686	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985917	89985918	rs1805006	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805006-A	0.01312	7E-79		1.816	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89985939	89985940	rs2228479	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	16q24.3	MC1R	rs2228479-A	0.135	4E-12		0.92	unit increase	Illumina [366864] (imputed)	N
1271	chr16	89985939	89985940	rs2228479	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	16q24.3	MC1R	rs2228479-A	0.135	7E-21		1.55	unit increase	Illumina [366864] (imputed)	N
1271	chr16	89986090	89986091	rs11547464	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs11547464-A	0.006441	7E-228		2.39	[2.24-2.54] unit increase	NR [11842647] (imputed)	N
1271	chr16	89986090	89986091	rs11547464	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs11547464-A	0.008256	3E-50		0.39	[0.34-0.44] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89986090	89986091	rs11547464	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs11547464-A	0.007148	2E-308		37.62	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986090	89986091	rs11547464	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	MC1R	rs11547464-A	0.00716	7E-9		1.695	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986090	89986091	rs11547464	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs11547464-A	0.007148	3E-50		1.897	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs1805007-C	NR	8E-78		4.05294	[3.63-4.48] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	16q24.3		rs1805007-C	NR	4E-14		0.722549	[0.54-0.91] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	16q24.3		rs1805007-T	NR	9E-107		0.3559	[0.32-0.39] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q24.3	MC1R	rs1805007-T	0.0635	1E-196		1.6273394	NR	Affymetrix, Illumina [NR] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	16q24.3	MC1R	rs1805007-C	0.898151	7E-19		1.0654038	NR	Affymetrix [~ 9600000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	16q24.3	TCF25, TUBB3	rs1805007-T	0.078	6E-87		0.38	[0.34-0.42] unit increase	NR [13607369] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	16q24.3	TUBB3	rs1805007-T	0.063459	5E-56		1.45	[1.40-1.49]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	16q24.3	MC1R	rs1805007-T	0.104182	1E-124		1.35	[1.32-1.39]	Affymetrix [7600000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	16q24.3	MC1R	rs1805007-T	0.063459	6E-110		1.34	[1.31-1.36]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	16q24.3		rs1805007-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805007-T	0.1048	2E-308		10.99	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	MC1R	rs1805007-A	0.1048	2E-101		1.822	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805007-T	0.1048	2E-308		1.744	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		5E-10	(Fitzpatrick phototype score)	0.2699	[0.19-0.35] unit decrease	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		2E-9	(Freckling phototype score)	0.8864	[0.6-1.18] unit decrease	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Skin pigmentation traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		2E-11	(Phototype score)	5.34	[3.78-6.9] unit decrease	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		8E-22	(Hair color (red))	3.6156182	[2.97-4.26] unit increase	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		7E-11	(Hair color phototype score)	1.782	[1.25-2.32] unit decrease	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		5E-14	(Hair color (light))	1.4697623	[1.13-1.81] unit increase	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	16q24.3	MC1R	rs1805007-?		1E-21	(Hair color)	0.5	[0.4-0.6] unit increase	Illumina [9499600] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	16q24.3	TCF25, TUBB3	rs1805007-T	NR	1E-7		0.189228	[0.12-0.26] unit increase	Illumina [at least 950000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	16q24.3	MC1R	rs1805007-T	0.1	1E-100		0.356	[0.35-0.37] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	16q24.3	MC1R	rs1805007-T	0.07	4E-37		1.5	[1.41-1.59]	Illumina [at least 560000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	16q24.3	MC1R	rs1805007-T	0.07	3E-63		1.4	[NR]	Illumina [at least 560000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	16q24.3	MC1R	rs1805007-T	0.07	9E-39		1.46		Affymetrix, Illumina [at least 560000] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Perceived skin darkness	9,316 European ancestry individuals	5,278 European ancestry individuals	16q24.3	MC1R	rs1805007-T	0.0689772921290763	1E-6		0.085422546	[0.051-0.120] unit decrease	Illumina [up to 11155022] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		16q24.3	MC1R	rs1805007-C	NR	1E-65		0.39	[0.35-0.43] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Sunburns	9,283 European ancestry individuals	4,236 European ancestry individuals	16q24.3	MC1R	rs1805007-C	NR	2E-19		1.66	[1.31-2.01] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Non-melanoma skin cancer	6,747 European ancestry individuals	2,078 European ancestry individuals	16q24.3	MC1R	rs1805007-C	NR	3E-10		0.34	[0.24-0.44] unit increase	Affymetrix, Illumina [7588169] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Hair color	7,070 European ancestry individuals	4,155 European ancestry individuals	16q24.3	MC1R	rs1805007-C	NR	3E-9		0.16	[0.10-0.22] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	21700618	Nan H	2011-06-23	Hum Mol Genet	Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma.	Basal cell carcinoma	2,045 European ancestry cases, 6,013 European ancestry controls	1,426 cases, 4,845 controls	16q24.3	MC1R	rs1805007-T	0.07	4E-17		1.55	[1.45-1.66]	Affymetrix, Illumina [2318094] (imputed)	N
1271	chr16	89986116	89986117	rs1805007	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Skin sensitivity to sun	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	16q24.3	MC1R	rs1805007-T	0.06	2E-55		2.94	[2.42-3.58]	Illumina [317511]	N
1271	chr16	89986116	89986117	rs1805007	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Red vs non-red hair color	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	16q24.3	MC1R	rs1805007-T	NR	2E-142		12.47	[9.37-16.60]	Illumina [317511]	N
1271	chr16	89986116	89986117	rs1805007	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Freckles	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	16q24.3	MC1R	rs1805007-T	0.05	1E-96		4.37	[3.56-5.37]	Illumina [317511]	N
1271	chr16	89986116	89986117	rs1805007	17952075	Sulem P	2007-10-21	Nat Genet	Genetic determinants of hair, eye and skin pigmentation in Europeans.	Blond vs. brown hair color	2,986 Icelandic ancestry individuals	3,932 European ancestry individuals	16q24.3	MC1R	rs1805007-T	0.08	2E-13		2.34	[1.69-3.24]	Illumina [317511]	N
1271	chr16	89986121	89986122	rs201326893	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs201326893-A	2.532E-4	4E-36		4.96	[4.18-5.74] unit increase	NR [11842647] (imputed)	N
1271	chr16	89986121	89986122	rs201326893	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs201326893-A	2.369E-4	2E-61		288.8	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986129	89986130	rs1110400	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1110400-C	0.01216	4E-214		9.997	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q24.3	MC1R	rs1805008-T	0.0664	2E-73		1.3685508	NR	Affymetrix, Illumina [NR] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	16q24.3	MC1R	rs1805008-T		2E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs1805008-?		9E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs1805008-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	16q24.3	MC1R	rs1805008-T	0.088312	6E-42		1.21	[1.18-1.25]	Affymetrix [7600000] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs1805008-?	NR	2E-225				NR [~ 8900000] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805008-T	0.08918	2E-308		12.84	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	MC1R	rs1805008-T	0.08953	1E-76		1.664	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs1805008-T	0.08918	2E-308		1.77	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986143	89986144	rs1805008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	16q24.3	Intergenic	rs1805008-T	0.085	2E-15	(MTAG)	0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1271	chr16	89986153	89986154	rs885479	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	16q24.3	MC1R	rs885479-?	NR	2E-7				Illumina [8896142] (imputed)	N
1271	chr16	89986153	89986154	rs885479	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs885479-A	0.04791	4E-8		1.165	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986202	89986202	rs555179612	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs555179612-TC	0.001706	2E-308		231.5	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986202	89986202	rs555179612	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs555179612-TC	0.001706	2E-22		2.465	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986302	89986303	rs200000734	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs200000734-T	6.126E-4	6E-50		32.03	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986302	89986303	rs200000734	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs200000734-T	6.13E-4	5E-10		2.59	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89986545	89986546	rs1805009	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q24.3	MC1R	rs1805009-C	0.0174	4E-30		1.4755793	NR	Affymetrix, Illumina [NR] (imputed)	N
1271	chr16	89986582	89986583	rs368507952	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs368507952-A	3.475E-4	6E-39		4.0	[3.4-4.6] unit increase	NR [11842647] (imputed)	N
1271	chr16	89986582	89986583	rs368507952	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	MC1R	rs368507952-A	4.156E-4	2E-93		71.08	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89987200	89987201	rs3212371	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	16q24.3	TUBB3	rs3212371-G	0.111549	2E-8		1.088613	NR	Affymetrix, Illumina [NR] (imputed)	N
1271	chr16	89988248	89988249	rs144623416	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs144623416-A	0.005084	3E-25		0.3	[0.24-0.36] unit increase	NR [11842647] (imputed)	N
1271	chr16	89990842	89990843	rs74415461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	16q24.3		rs74415461-T	0.0843	6E-12		0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1271	chr16	89991541	89991542	rs4625719	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs4625719-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1271	chr16	89991541	89991542	rs4625719	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs4625719-?		9E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1271	chr16	89991598	89991599	rs4550447	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	16q24.3	TUBB3	rs4550447-C	0.1204	5E-24		1.0570688	[NR]	Illumina [12493444] (imputed)	N
1271	chr16	89992612	89992613	rs111398992	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	16q24.3	NR	rs111398992-T	0.1325	1E-17				NR [9056863] (imputed)	N
1271	chr16	89992612	89992613	rs111398992	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	16q24.3	TUBB3	rs111398992-T	0.13	6E-15				NR [9312144] (imputed)	N
1271	chr16	89992612	89992613	rs111398992	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	16q24.3	ADAMTS6, CENPK, PPWD1, TRIM23, TRAPPC13, CTC-534A2.2, SGTB, NLN	rs111398992-?		6E-11				NR [7428630] (imputed)	N
1271	chr16	89992612	89992613	rs111398992	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	16q24.3	CPNE7, DPEP1, CHMP1A, SPATA33, CDK10, RP11-368I7.4, SPATA2L, VPS9D1, ZNF276, FANCA, SPIRE2, TCF25, MC1R, TUBB3, DEF8, CENPBD1, DBNDD1, GAS8, C16orf3, PRDM7	rs111398992-?		2E-15				NR [7428630] (imputed)	N
1271	chr16	89994915	89994916	rs4586434	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TUBB3	rs4586434-?	0.7094	4E-8		2.8328614	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	89995018	89995019	rs568771275	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs568771275-A	0.002795	6E-20		1.04	[0.82-1.26] unit decrease	NR [11842647] (imputed)	N
1271	chr16	89995018	89995019	rs568771275	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs568771275-A	0.00234	5E-15		0.33	[0.25-0.41] unit increase	NR [11842647] (imputed)	N
1271	chr16	89998793	89998794	rs2302898	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	TUBB3	rs2302898-A	0.29	3E-103		2.456	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	90002359	90002360	rs12207	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	16q24.3	TUBB3	rs12207-A	0.05785	7E-6		0.9667	[0.57-1.36] unit decrease	Illumina [533687]	N
1271	chr16	90005165	90005166	rs139107291	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs139107291-T	0.002442	4E-17		1.04	[0.8-1.28] unit decrease	NR [11842647] (imputed)	N
1271	chr16	90005452	90005453	rs4785741	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	16q24.3	TUBB3, MC1R	rs4785741-T	NR	7E-7		70.9925	[42.97-99.02] unit increase	Illumina [6995140] (imputed)	N
1271	chr16	90005560	90005561	rs4785742	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	16q24.3	NR	rs4785742-T	0.2856	2E-9		0.0512	[0.035-0.068] unit decrease	Illumina [~ 10600000] (imputed)	N
1271	chr16	90007919	90007920	rs55984850	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	16q24.3	NR	rs55984850-C	0.0127022	4E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1271	chr16	90013177	90013178	rs28479182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs28479182-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1271	chr16	90020345	90020346	rs3803686	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	DEF8	rs3803686-C	NR	2E-35		0.138	[0.062-0.214] unit decrease	Affymetrix [8351141] (imputed)	N
1271	chr16	90022484	90022484	rs11446223	34724200	Marley AR	2021-11-01	Int J Cancer	Citrus-Gene interaction and melanoma risk in the UK Biobank.	Melanoma x citrus consumption interaction (2df)	1,563 European ancestry cases, 193,296 European ancestry controls	NA	16q24.3		rs11446223-GA	0.17	5E-13				Affymetrix [9981017] (imputed)	N
1271	chr16	90022692	90022693	rs146972365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16q24.3	DEF8	rs146972365-C	NR	2E-9		0.0311639	[0.021-0.041] unit decrease	Affymetrix [323123] (imputed)	N
1271	chr16	90022692	90022693	rs146972365	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Red vs non-red hair color	181 European ancestry red hair individuals, 6,910 European ancestry non-red hair individuals	NA	16q24.3	MC1R	rs146972365-?	0.947	1E-55		13.888889	[13.56-14.22]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1271	chr16	90022692	90022693	rs146972365	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	16q24.3	MC1R	rs146972365-?	0.053	1E-11		1.8751	[1.69-2.06]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1271	chr16	90022692	90022693	rs146972365	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	16q24.3	MC1R	rs146972365-?	0.053	5E-10		1.7771	[1.60-1.96]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1271	chr16	90024047	90024048	rs200998494	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	DEF8	rs200998494-T	2.618E-4	2E-56		131.0	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	90024969	90024970	rs74800773	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Blond vs. brown/black hair color	12,398 European ancestry individuals	NA	16q24.3		rs74800773-C	NR	4E-14		0.671198	[0.5-0.85] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1271	chr16	90025901	90025902	rs187891579	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs187891579-C	0.002724	3E-13		0.81	[0.59-1.03] unit decrease	NR [11842647] (imputed)	N
1271	chr16	90026511	90026512	rs4268748	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	16q24.3	DEF8	rs4268748-T	0.7067	7E-12				NR [7320282]	N
1271	chr16	90026511	90026512	rs4268748	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	16q24.3	MC1R	rs4268748-T	0.71	1E-15		0.1293	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
1271	chr16	90026511	90026512	rs4268748	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	16q24.3	MC1R	rs4268748-T	0.7294	3E-33		1.4130281	[1.33-1.49]	Illumina [8966411] (imputed)	N
1271	chr16	90026511	90026512	rs4268748	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	16q24.3	DEF8, MC1R	rs4268748-C	0.26	2E-44		1.33	[1.28-1.39]	Affymetrix [9610468] (imputed)	N
1271	chr16	90026511	90026512	rs4268748	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin colour saturation	5,857 European ancestry individuals	NA	16q24.3	MC1R	rs4268748-C	0.276933583745945	3E-15		0.008637669	[NR] unit decrease	Illumina [11155022] (imputed)	N
1271	chr16	90027625	90027626	rs8063761	26908436	Siiskonen SJ	2016-02-12	Cancer Epidemiol Biomarkers Prev	A Genome-Wide Association Study of Cutaneous Squamous Cell Carcinoma among European Descendants.	Squamous cell carcinoma	745 European ancestry cases, 12,805 European ancestry controls	531 European ancestry cases, 551 European ancestry controls	16q24.3	DEF8	rs8063761-T	NR	2E-9		1.34	[1.22-1.47]	Affymetrix [2392512] (imputed)	N
1271	chr16	90027837	90027838	rs8062311	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs8062311-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1271	chr16	90029659	90029660	rs115841388	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	DEF8	rs115841388-?	0.93218	4E-25		2.1767523	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	90032454	90032455	rs117204628	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	16q24.3	DEF8	rs117204628-T	0.0335785	1E-8		0.16098747	[0.11-0.22] unit increase	Affymetrix [7260263] (imputed)	N
1271	chr16	90032454	90032455	rs117204628	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	16q24.3	DEF8	rs117204628-T	0.034128	7E-22		1.23	[1.18-1.29]	Affymetrix [7600000] (imputed)	N
1271	chr16	90032454	90032455	rs117204628	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	DEF8	rs117204628-T	0.0335	4E-11		3.548	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	90032454	90032455	rs117204628	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	16q24.3	DEF8	rs117204628-T	0.0337	8E-28		1.56	NR	Affymetrix [9154080] (imputed)	N
1271	chr16	90035140	90035141	rs4785752	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs4785752-A	NR	1E-334		0.345	[0.24-0.45] unit increase	Affymetrix [8351141] (imputed)	N
1271	chr16	90039423	90039424	rs147440955	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs147440955-T	0.00115	6E-68		3.25	[2.88-3.62] unit increase	NR [11842647] (imputed)	N
1271	chr16	90039423	90039424	rs147440955	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs147440955-T	0.001578	8E-20		0.55	[0.43-0.67] unit decrease	NR [11842647] (imputed)	N
1271	chr16	90039449	90039450	rs11649211	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	AFG3L1P	rs11649211-G	NR	1E-30		0.107	[0.044-0.17] unit increase	Affymetrix [8351141] (imputed)	N
1271	chr16	90044027	90044028	rs4408545	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs4408545-C	NR	1E-28		1.2164	NR	Affymetrix [7846216] (imputed)	N
1271	chr16	90044342	90044343	rs181039899	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs181039899-T	0.003739	4E-24		0.95	[0.77-1.13] unit decrease	NR [11842647] (imputed)	N
1272	chr16	90052986	90052987	rs575866787	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	AFG3L1P	rs575866787-A	0.02579	2E-308		39.43	NR	Affymetrix [9154080] (imputed)	N
1272	chr16	90052986	90052987	rs575866787	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	AFG3L1P	rs575866787-A	0.02579	2E-112		1.782	NR	Affymetrix [9154080] (imputed)	N
1272	chr16	90054703	90054704	rs11866420	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	16q24.3	AFG3L1P	rs11866420-C	0.426119	8E-16		0.0167806	[0.013-0.021] unit increase	NR [16516521] (imputed)	N
1272	chr16	90054708	90054709	rs8063160	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Red vs non-red hair color	181 European ancestry red hair individuals, 6,910 European ancestry non-red hair individuals	NA	16q24.3	MC1R	rs8063160-?	0.935	8E-50		12.99	[12.65-13.33]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1272	chr16	90054708	90054709	rs8063160	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Light vs. dark hair color	3,069 European ancestry light hair individuals, 4,022 European ancestry dark hair individuals	NA	16q24.3	MC1R	rs8063160-?	0.065	5E-14		1.8891	[1.72-2.05]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1272	chr16	90054708	90054709	rs8063160	26184321	Lin BD	2015-07-13	Genes (Basel)	Heritability and Genome-Wide Association Studies for Hair Color in a Dutch Twin Family Based Sample.	Brown vs. non-brown hair color	3,826 European ancestry brown hair individuals, 3,265 European ancestry non-brown hair individuals	NA	16q24.3	MC1R	rs8063160-?	0.065	9E-12		1.7837	[1.62-1.95]	Affymetrix, Illumina, Perlegen [6473680] (imputed)	N
1272	chr16	90062008	90062009	rs62054567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62054567-?		5E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1272	chr16	90062008	90062009	rs62054567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62054567-?		4E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90062008	90062009	rs62054567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62054567-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90062008	90062009	rs62054567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62054567-?		7E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90062008	90062009	rs62054567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs62054567-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1272	chr16	90062323	90062325	rs10584116	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q24.3	intergenic	rs10584116-A	0.0996144	4E-8		0.01822	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1272	chr16	90062323	90062325	rs10584116	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q24.3	intergenic	rs10584116-A	0.0996144	1E-12	(females)	0.03253	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1272	chr16	90062323	90062325	rs10584116	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q24.3	intergenic	rs10584116-A	0.0996144	5E-11	(females)	0.02944	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1272	chr16	90062323	90062325	rs10584116	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	16q24.3	intergenic	rs10584116-A	0.0996144	2E-6		0.01523	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1272	chr16	90062478	90062479	rs35176381	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	AFG3L1P	rs35176381-G	NR	5E-512		0.436	[0.31-0.56] unit increase	Affymetrix [8351141] (imputed)	N
1272	chr16	90063889	90063890	rs62054570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	16q24.3	AFG3L1P	rs62054570-G	NR	1E-8		0.0239504	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1272	chr16	90066477	90066478	rs35314430	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs35314430-A	0.003744	3E-12		0.6	[0.43-0.77] unit increase	NR [11842647] (imputed)	N
1272	chr16	90066935	90066936	rs4785763	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	16q24.3	AFG3L1P	rs4785763-A	0.33	6E-22		1.32	[NR]	Illumina [at least 560000] (imputed)	N
1272	chr16	90066935	90066936	rs4785763	19578364	Bishop DT	2009-07-05	Nat Genet	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	16q24.3	MC1R	rs4785763-A	0.32	6E-22		1.36	[1.28-1.45]	Illumina [~ 317000]	N
1272	chr16	90067183	90067184	rs73283869	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		16q24.3	NR	rs73283869-G	NR	2E-20		1.3117747	[1.24-1.39]	Affymetrix [5734850] (imputed)	N
1272	chr16	90078021	90078022	rs77381714	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs77381714-T	NR	5E-77		4.09877	[3.67-4.53] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1272	chr16	90078021	90078022	rs77381714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	16q24.3	DBNDD1	rs77381714-C	NR	7E-10		0.0296682	[0.02-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1272	chr16	90078723	90078724	rs77576048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	16q24.3	Intergenic	rs77576048-C	0.9225	6E-11		0.0278	[0.02-0.036] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1272	chr16	90080542	90080543	rs11863944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	16q24.3	DBNDD1	rs11863944-A	NR	3E-10		0.0238957	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1272	chr16	90080722	90080723	rs77733403	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	16q24.3	DBNDD1	rs77733403-C	0.1742	5E-8		1.087	NR	Affymetrix [9154080] (imputed)	N
1272	chr16	90080722	90080723	rs77733403	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	DBNDD1	rs77733403-C	NR	8E-416		0.508	[0.36-0.66] unit increase	Affymetrix [8351141] (imputed)	N
1272	chr16	90080746	90080747	rs112579477	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	16q24.3	Intergenic	rs112579477-A	0.068	4E-8	(MTAG)	0.025	[0.016-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1272	chr16	90080851	90080852	rs66701606	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	16q24.3	NR	rs66701606-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1272	chr16	90082090	90082091	rs545531252	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs545531252-T	0.001075	4E-9		1.07	[0.72-1.42] unit decrease	NR [11842647] (imputed)	N
1272	chr16	90084560	90084561	rs11648785	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	16q24.3	MC1R	rs11648785-T	NR	3E-9		0.14	[0.10-0.18] tanning ability score decrease	Illumina [528173]	N
1272	chr16	90093074	90093075	rs77270200	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	16q24.3		rs77270200-?	NR	4E-53		1.2846	[1.25-1.32]	NR [685523]	N
1272	chr16	90093074	90093075	rs77270200	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	16q24.3		rs77270200-?	NR	5E-24		1.44664	[1.38-1.52]	NR [674885]	N
1272	chr16	90093074	90093075	rs77270200	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	16q24.3		rs77270200-?	NR	7E-16		1.09246	[1.07-1.11]	NR [688737]	N
1272	chr16	90106524	90106525	rs4785767	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	16q24.3		rs4785767-C	NR	2E-12		1.1049724	[1.07-1.14]	Affymetrix [7846216] (imputed)	N
1272	chr16	90106768	90106769	rs145962792	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs145962792-G	0.002627	5E-138		2.93	[2.7-3.16] unit increase	NR [11842647] (imputed)	N
1272	chr16	90106768	90106769	rs145962792	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Blonde (UKB data field 1747_1)	51,424 European ancestry cases, 403,740 European ancestry controls	NA	16q24.3		rs145962792-G	0.002869	1E-13		0.46	[0.34-0.58] unit increase	NR [11842647] (imputed)	N
1272	chr16	90110797	90110798	rs74583214	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	16q24.3	NR	rs74583214-T	NR	5E-8	(EA)	0.2388	[0.15-0.32] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1272	chr16	90113106	90113107	rs4785612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	16q24.3	Intergenic	rs4785612-C	0.2174	2E-8		0.0132	[0.0085-0.0179] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1272	chr16	90115558	90115559	rs9932312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	16q24.3	Intergenic	rs9932312-A	0.2464	8E-10	(MTAG)	0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1272	chr16	90123105	90123106	rs112525473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	16q24.3		rs112525473-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1272	chr16	90133781	90133782	rs550845267	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs550845267-G	0.004132	1E-17		0.76	[0.59-0.93] unit decrease	NR [11842647] (imputed)	N
1272	chr16	90134083	90134084	rs534223674	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs534223674-A	0.001244	7E-11		1.07	[0.75-1.39] unit decrease	NR [11842647] (imputed)	N
1272	chr16	90135036	90135037	rs4386139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	16q24.3		rs4386139-?	NR	2E-293				NR [~ 8900000] (imputed)	N
1272	chr16	90136463	90136464	rs60701633	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs60701633-?		9E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90136463	90136464	rs60701633	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs60701633-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1272	chr16	90136463	90136464	rs60701633	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs60701633-?		4E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90136463	90136464	rs60701633	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs60701633-?		3E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90136463	90136464	rs60701633	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	16q24.3	NR	rs60701633-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1272	chr16	90143566	90143567	rs118174802	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Red vs. brown/black hair color	10,450 European ancestry individuals	NA	16q24.3		rs118174802-C	NR	5E-16		1.86465	[1.41-2.31] decrease	Affymetrix, Illumina [32876187] (imputed)	N
1272	chr16	90143566	90143567	rs118174802	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	16q24.3	PRDM7, TUBB4Q	rs118174802-T	NR	1E-6		0.196505	[0.12-0.28] unit increase	Illumina [at least 950000] (imputed)	N
1272	chr16	90148978	90148979	rs4785781	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs4785781-?		4E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
1272	chr16	90153345	90153346	rs62052663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	16q24.3		rs62052663-?	NR	1E-51				NR [~ 8900000] (imputed)	N
1272	chr16	90154712	90154713	rs184498624	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	16q24.3		rs184498624-A	0.009159	2E-19		0.2	[0.16-0.24] unit increase	NR [11842647] (imputed)	N
1272	chr16	90158004	90158005	rs117417690	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	16q24.3	NR	rs117417690-?		5E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1272	chr16	90158004	90158005	rs117417690	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	NR	rs117417690-T	NR	9E-167		0.43	[0.27-0.59] unit increase	Affymetrix [8351141] (imputed)	N
1272	chr16	90158837	90158838	rs9922277	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	16q24.3	PRDM7	rs9922277-C	NR	4E-139		0.223	[0.13-0.31] unit increase	Affymetrix [8351141] (imputed)	N
1272	chr16	90168141	90168142	rs542835323	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Red (UKB data field 1747_2)	20,692 European ancestry cases, 434,472 European ancestry controls	NA	16q24.3		rs542835323-C	0.001702	1E-12		1.03	[0.75-1.31] unit decrease	NR [11842647] (imputed)	N
1272	chr16	90170094	90170095	rs56407236	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	16q24.3	FAM157C	rs56407236-A	0.0693408	8E-14		0.1705929	[0.13-0.22] unit decrease	Affymetrix [7260263] (imputed)	N
585	chr17	1388	1389	rs62053747	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	17p13.3	NR	rs62053747-?	NR	2E-6		0.1448	[0.085-0.205] unit increase	Illumina [~ 7800000] (imputed)	N
585	chr17	38923	38924	rs7217319	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	17p13.3	RPH3AL	rs7217319-?	0.63	4E-6		1.48	[NR]	Affymetrix [700022]	N
585	chr17	80720	80721	rs12945036	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	17p13.3	RPH3AL	rs12945036-?		1E-6				Illumina [301908]	N
586	chr17	158753	158754	rs35621498	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	17p13.3	RPH3AL	rs35621498-A	0.49	2E-7		6.25	[2.94-14.29]	Illumina [2668805]	N
586	chr17	160522	160523	rs55842940	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	17p13.3	RPH3AL	rs55842940-A	0.36	5E-6		3.86	[2.21-7.02]	Illumina [2668805]	N
586	chr17	193594	193595	rs66459911	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	17p13.3	RPH3AL	rs66459911-T	0.319	9E-6		0.08	unit decrease	Illumina [5510858] (imputed)	N
587	chr17	277601	277602	rs7212139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	C17orf97	rs7212139-C	NR	4E-11		0.0196608	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
587	chr17	277601	277602	rs7212139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	C17orf97	rs7212139-C	NR	3E-8		0.0174035	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
587	chr17	278167	278168	rs36020100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	C17orf97	rs36020100-G	NR	3E-17		0.0240375	[0.018-0.03] unit decrease	Affymetrix [321016] (imputed)	N
587	chr17	287362	287363	rs11871257	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	FAM101B	rs11871257-A	NR	4E-8		0.0173406	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
587	chr17	288594	288595	rs11653376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	FAM101B	rs11653376-G	NR	2E-8		0.0191089	[0.012-0.026] unit decrease	Affymetrix [321788] (imputed)	N
587	chr17	289268	289269	rs9889815	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.3	NR	rs9889815-?		4E-7				Illumina [4322238] (imputed)	N
587	chr17	294480	294481	rs7220832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	FAM101B	rs7220832-T	NR	2E-17		0.0254814	[0.02-0.031] unit increase	Affymetrix [321788] (imputed)	N
587	chr17	296441	296442	rs3924487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	FAM101B	rs3924487-C	NR	4E-10		0.0209594	[0.014-0.028] unit decrease	Affymetrix [321788] (imputed)	N
587	chr17	296441	296442	rs3924487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	FAM101B	rs3924487-C	NR	3E-9		0.0192066	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	400388	400389	rs8077853	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs8077853-C	NR	8E-10		0.02378	[0.016-0.031] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	400798	400799	rs77612020	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs77612020-A	NR	2E-15		0.03746	[0.028-0.047] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	400798	400799	rs77612020	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.3	NR	rs77612020-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
588	chr17	400932	400933	rs9916346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs9916346-C	NR	8E-22		0.0282577	[0.022-0.034] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	400932	400933	rs9916346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs9916346-C	NR	2E-10		0.0203882	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
588	chr17	400932	400933	rs9916346	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs9916346-C	NR	3E-12		0.021507	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
588	chr17	401846	401847	rs16952930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs16952930-C	NR	3E-13		0.0331169	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	402164	402165	rs8066714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs8066714-A	NR	1E-25		0.0365738	[0.03-0.043] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	402164	402165	rs8066714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs8066714-A	NR	1E-10		0.0234289	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
588	chr17	402435	402436	rs8067220	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs8067220-A	NR	9E-9		0.0204496	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
588	chr17	403829	403830	rs8076792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs8076792-A	NR	1E-10		0.0253774	[0.018-0.033] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	404299	404300	rs8077609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs8077609-C	NR	2E-26		0.0323072	[0.026-0.038] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	404536	404537	rs4968166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3	rs4968166-T	NR	4E-31		0.0360365	[0.03-0.042] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	404536	404537	rs4968166	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs4968166-T	NR	3E-9		0.0192088	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
588	chr17	405757	405758	rs10706266	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17p13.3	RP5-1029F21.3	rs10706266-A	0.2712	4E-6		0.0429	[0.025-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr17	407464	407465	rs11247554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.3	NR	rs11247554-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
588	chr17	408124	408125	rs11654589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	RP5-1029F21.3	rs11654589-A	NR	1E-14		0.0237816	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
588	chr17	414002	414003	rs11649837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3, VPS53	rs11649837-A	NR	4E-16		0.0342159	[0.026-0.042] unit increase	Affymetrix [321788] (imputed)	N
588	chr17	414002	414003	rs11649837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	RP5-1029F21.3, VPS53	rs11649837-A	NR	1E-16		0.03357	[0.026-0.041] unit increase	Affymetrix [321016] (imputed)	N
588	chr17	423050	423051	rs2034088	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p13.3	VPF53, FAM101B	rs2034088-T	0.5258	5E-9	(EA)	0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
588	chr17	423050	423051	rs2034088	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p13.3	VPF53, FAM101B	rs2034088-T	0.5258	1E-9	(EA, women)	0.0278	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
588	chr17	425098	425099	rs11651340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs11651340-T	NR	1E-30		0.0337797	[0.028-0.04] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	425098	425099	rs11651340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs11651340-T	NR	4E-25		0.0292324	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	425482	425483	rs12450158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs12450158-A	NR	3E-9		0.0222454	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	439123	439124	rs11652657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p13.3	VPS53, RP5-1029F21.4	rs11652657-G	NR	1E-12		0.0228702	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
588	chr17	440580	440581	rs79975870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53, RP5-1029F21.4	rs79975870-C	NR	9E-9		0.0377897	[0.025-0.051] unit increase	Affymetrix [321788] (imputed)	N
588	chr17	440580	440581	rs79975870	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53, RP5-1029F21.4	rs79975870-C	NR	3E-9		0.037505	[0.025-0.05] unit increase	Affymetrix [321016] (imputed)	N
588	chr17	440707	440708	rs35320312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53, RP5-1029F21.4	rs35320312-A	NR	5E-8		0.0276033	[0.018-0.038] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	440707	440708	rs35320312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53, RP5-1029F21.4	rs35320312-A	NR	1E-8		0.0278745	[0.018-0.037] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	446553	446554	rs12941393	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs12941393-C	NR	2E-15		0.0306454	[0.023-0.038] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	446553	446554	rs12941393	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs12941393-C	NR	9E-13		0.0264536	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	450392	450393	rs9915418	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	17p13.3	VPS53	rs9915418-?	NR	2E-6		3.58	[2.13-5.03] unit increase	Illumina [2820932] (imputed)	N
588	chr17	452897	452898	rs3744734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs3744734-C	NR	2E-18		0.0258847	[0.02-0.032] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	452897	452898	rs3744734	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs3744734-C	NR	6E-16		0.0229728	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	452964	452965	rs7225729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs7225729-T	NR	3E-11		0.0219129	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	452964	452965	rs7225729	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs7225729-T	NR	2E-8		0.0178072	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	453533	453534	rs16953523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs16953523-A	NR	6E-12		0.028253	[0.02-0.036] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	455450	455451	rs9905044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.3	VPS53	rs9905044-C	NR	4E-10		0.0194878	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17p13.3	VPS53	rs741677-A	0.5798	8E-6	(EA, women)	0.0241	[0.014-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17p13.3	VPS53	rs741677-A	0.5798	2E-8	(EA)	0.0243	[0.016-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17p13.3	VPS53	rs741677-A	0.5689	3E-9		0.0241	[0.016-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17p13.3	VPS53	rs741677-A	0.5798	2E-6	(EA)	0.0231	[0.013-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17p13.3	VPS53	rs741677-A	0.5689	9E-7		0.0232	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17p13.3	VPS53	rs741677-?	0.5798	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	463842	463843	rs741677	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17p13.3	VPS53	rs741677-?	0.5689	7E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
588	chr17	464290	464291	rs741678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs741678-C	NR	1E-27		0.0321804	[0.026-0.038] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	464290	464291	rs741678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs741678-C	NR	5E-25		0.0293259	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	464831	464832	rs9907102	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	FAM101B	rs9907102-?	NR	4E-6	(TAG 48:2)	0.1540723	[0.088-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
588	chr17	464831	464832	rs9907102	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	FAM101B	rs9907102-?	NR	3E-6	(TAG 50:3)	0.15609868	[0.091-0.222] unit increase	Affymetrix [at least 2500000] (imputed)	N
588	chr17	464831	464832	rs9907102	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	FAM101B	rs9907102-?	NR	1E-6	(TAG 50:2)	0.16221029	[0.096-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
588	chr17	481603	481604	rs11870735	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p13.3	NR	rs11870735-C	0.8178	2E-8		0.0339	[0.022-0.046] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
588	chr17	481603	481604	rs11870735	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.3	NR	rs11870735-C	0.824	8E-9		0.0314	[0.021-0.042] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
588	chr17	486820	486821	rs12938449	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.3	VPS53	rs12938449-A	0.1814	1E-8		0.018	[0.012-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
588	chr17	495326	495327	rs141062196	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17p13.3	VPS53	rs141062196-G	0.805564	6E-15		0.0188322	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
588	chr17	499215	499216	rs149604061	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs149604061-A	NR	2E-23		0.0320906	[0.026-0.038] unit increase	Affymetrix [321788] (imputed)	N
588	chr17	499296	499297	rs58180134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs58180134-C	NR	8E-9		0.0199224	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
588	chr17	499296	499297	rs58180134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs58180134-C	NR	2E-8		0.0188469	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
588	chr17	510745	510746	rs79257300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs79257300-?	NR	3E-8				NR [~ 8900000] (imputed)	N
589	chr17	560850	560851	rs2543777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs2543777-C	NR	2E-21		0.0298231	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
589	chr17	565744	565745	rs2543778	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs2543778-C	NR	2E-12		0.0218709	[0.016-0.028] unit decrease	Affymetrix [321788] (imputed)	N
589	chr17	565744	565745	rs2543778	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs2543778-C	NR	1E-11		0.0202824	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
589	chr17	567701	567702	rs117770487	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.3	NR	rs117770487-C	0.02613	3E-8	(SOD2)	1.662	NR unit increase	Illumina [1671387] (imputed)	N
589	chr17	568514	568515	rs71355297	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs71355297-T	NR	3E-20		0.0309908	[0.024-0.038] unit decrease	Affymetrix [321016] (imputed)	N
589	chr17	568514	568515	rs71355297	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p13.3	VPS53	rs71355297-C	0.770405	2E-9		0.0141052	[0.0095-0.0187] unit increase	Affymetrix [NR] (imputed)	N
589	chr17	581889	581890	rs34699431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs34699431-T	NR	5E-22		0.0286885	[0.023-0.035] unit increase	Affymetrix [321788] (imputed)	N
589	chr17	581889	581890	rs34699431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs34699431-T	NR	6E-22		0.0275332	[0.022-0.033] unit increase	Affymetrix [321016] (imputed)	N
589	chr17	599923	599924	rs11657201	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17p13.3	VPS53	rs11657201-A	0.756822	2E-8		0.01297	[0.0084-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
589	chr17	600256	600257	rs870181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs870181-T	NR	8E-24		0.0332889	[0.027-0.04] unit decrease	Affymetrix [321788] (imputed)	N
589	chr17	612462	612463	rs56161505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs56161505-T	NR	2E-9		0.025302	[0.017-0.034] unit decrease	Affymetrix [321788] (imputed)	N
589	chr17	612462	612463	rs56161505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs56161505-T	NR	1E-8		0.0230705	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
589	chr17	613285	613286	rs151300770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	VPS53	rs151300770-A	NR	1E-10		0.0436294	[0.03-0.057] unit decrease	Affymetrix [321788] (imputed)	N
589	chr17	614006	614007	rs11653781	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	VPS53	rs11653781-A	NR	9E-9		0.0374124	[0.025-0.05] unit decrease	Affymetrix [321016] (imputed)	N
589	chr17	618964	618965	rs684232	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17p13.3		rs684232-?	NR	4E-6		1.08583	[1.05-1.12]	NR [680312]	N
589	chr17	618964	618965	rs684232	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17p13.3	NR	rs684232-C	0.355297324	4E-9		1.1085898	[1.07-1.15]	Affymetrix, Illumina [20400945] (imputed)	N
589	chr17	618964	618965	rs684232	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17p13.3	NR	rs684232-C	NR	2E-33		1.084	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
589	chr17	618964	618965	rs684232	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	17p13.3	NR	rs684232-G	NR	4E-8		1.08	NR	Affymetrix [at least 232408] (imputed)	N
589	chr17	618964	618965	rs684232	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17p13.3	NR	rs684232-C	0.35	4E-24		1.09	[1.07-1.10]	Illumina [20370935] (imputed)	N
589	chr17	618964	618965	rs684232	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	17p13.3	DBIL5P, FAM57A, GEMIN4, GLOD4, NXN, RNMTL1, VPS53	rs684232-G	0.36	5E-15		1.1	[1.07-1.14]	Illumina [~ 2600000] (imputed)	N
589	chr17	619161	619162	rs461251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17p13.3		rs461251-G	NR	6E-10		0.0745	[0.051-0.098] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
589	chr17	633187	633188	rs2644714	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	17p13.3	VPS53, FAM57A	rs2644714-?	NR	3E-6			NR	Illumina [up to 317503]	N
589	chr17	633566	633567	rs12945978	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Lactate meal response (LMM)	11,410 individuals	NA	17p13.3		rs12945978-G	0.155912	3E-8		0.169075	[0.12-0.22] unit decrease	Illumina [7568622] (imputed)	N
589	chr17	636266	636266	rs141977343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	FAM57A	rs141977343-AGGGCC	NR	6E-9		0.0171384	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
589	chr17	636821	636822	rs2295479	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	17p13.3	TLCD3A	rs2295479-?	NR	3E-6			NR	Illumina [up to 317503]	N
589	chr17	636946	636947	rs2295480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	FAM57A	rs2295480-G	NR	9E-14		0.0240279	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
589	chr17	636946	636947	rs2295480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	FAM57A	rs2295480-G	NR	3E-14		0.0235804	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
589	chr17	639326	639327	rs12600794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.3	NR	rs12600794-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
589	chr17	641815	641816	rs76034074	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p13.3	NR	rs76034074-?	NR	2E-6		4.772	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr17	700019	700020	rs623323	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	17p13.3	NXN	rs623323-T	0.15	4E-6	(Punjabi Sikhs)	1.28	[1.15 - 1.42]	Illumina [1232008] (imputed)	N
590	chr17	701121	701122	rs910920	29278617	Sucheston-Campbell LE	2018-02-01	Pharmacogenet Genomics	Genome-wide meta-analyses identifies novel taxane-induced peripheral neuropathy-associated loci.	Taxane-induced peripheral neuropathy in breast cancer	204 European ancestry cases with >= grade 3 neuropathy, 1,919 European ancestry cases with < grade 3 neuropathy, 31 African American cases with >= grade 3 neuropathy, 108 African American cases with <grade 3 neuropathy	NA	17p13.3	NXN	rs910920-A	0.31	5E-6		1.754386	[1.37-2.22]	Illumina [at least 521600] (imputed)	N
590	chr17	707328	707329	rs3851779	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	17p13.3	NR	rs3851779-C	0.1347	4E-6		0.2068	[0.12-0.29] unit decrease	Illumina [10677593] (imputed)	N
590	chr17	738852	738853	rs8066620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.3	NXN	rs8066620-T	0.307326	2E-12		0.017077157	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17	738852	738853	rs8066620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.3	NXN	rs8066620-T	0.307324	2E-11		0.016320225	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
590	chr17	738852	738853	rs8066620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.3	NR	rs8066620-T	0.306779	4E-12		0.01472	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
590	chr17	738852	738853	rs8066620	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.3	NXN	rs8066620-C	0.69187	2E-19		0.0180728	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
590	chr17	738852	738853	rs8066620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.3		rs8066620-?	NR	2E-20				NR [~ 8900000] (imputed)	N
590	chr17	738951	738952	rs56336971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p13.3		rs56336971-C	NR	2E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
590	chr17	738951	738952	rs56336971	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs56336971-?	NR	1E-18		0.0192312	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
590	chr17	739366	739367	rs8071462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.3	NXN	rs8071462-A	0.307784	2E-9		0.014762673	[0.01-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17	747700	747701	rs35307996	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	17p13.3		rs35307996-G	NR	6E-7		0.11	[0.03-0.34]	Illumina [10838245] (imputed)	N
590	chr17	766398	766399	rs59422776	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	17p13.3	NR	rs59422776-?	NR	4E-9			[NR]	NR [1665663]	N
590	chr17	775050	775051	rs747685	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	17p13.3	NXN	rs747685-T	0.86	6E-7	(EA, MAP, Age 60-69)	1.5	[0.91-2.09] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
590	chr17	775333	775334	rs747687	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	17p13.3	NXN	rs747687-G	0.86	2E-7	(EA, DBP, Age 60-69)	1.37	[0.86-1.88] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
591	chr17	800592	800593	rs12603526	27145994	Wang M	2016-05-05	Nat Commun	Common genetic variation in ETV6 is associated with colorectal cancer susceptibility.	Colorectal cancer	1,023 Han Chinese ancestry cases and 1,306 Han Chinese ancestry controls	5,317 Han Chinese ancestry cases, 6,887 Han Chinese ancestry controls, 1,046 European ancestry cases, 1,076 European ancestry controls	17p13.3	NXN	rs12603526-C	0.184	3E-6	Han Chinese	1.44	[1.24-1.68]	Illumina [691326]	N
591	chr17	800592	800593	rs12603526	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	17p13.3	NR	rs12603526-C	0.3	3E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 4000000] (imputed)	N
591	chr17	800592	800593	rs12603526	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	17p13.3	NXN	rs12603526-C	0.3	3E-8	(East Asian)	1.1	[1.06-1.14]	Affymetrix, Illumina [2400000] (imputed)	N
591	chr17	809424	809425	rs4968126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	17p13.3		rs4968126-G	NR	1E-9		0.0578	[0.039-0.077] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
591	chr17	809642	809643	rs4968127	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17p13.3	NXN	rs4968127-G	0.3684	1E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
591	chr17	809812	809815	rs150140562	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	17p13.3	NR	rs150140562-G	0.726	8E-7		0.5007	[0.3-0.7] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
591	chr17	812533	812534	rs9915645	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	17p13.3		rs9915645-?	0.52	5E-10	(East Asian)	1.0869565	[1.05-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
591	chr17	814242	814243	rs73975586	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17p13.3	NXN	rs73975586-A	0.8732	2E-11		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
591	chr17	816533	816535	rs200136777	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	17p13.3		rs200136777-GAC	NR	3E-6	(GLM)	4.3976	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
591	chr17	816740	816741	rs73975588	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	17p13.3	NR	rs73975588-A	0.87	9E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
591	chr17	822619	822620	rs118021774	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	17p13.3	NR	rs118021774-?	NR	4E-6		1.8284526	[1.42-2.36]	Affymetrix, Illumina [~ 10400000] (imputed)	N
591	chr17	831666	831667	rs2360111	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17p13.3	NXN	rs2360111-T	NR	3E-6	(Economic policy)	0.113	[0.066-0.16] unit decrease	Illumina [628922]	N
591	chr17	838689	838690	rs72812052	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs72812052-?	NR	5E-11		0.0163272	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
591	chr17	839562	839563	rs66468717	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	17p13.3	NR	rs66468717-A	0.186736	1E-6		0.9538674	[0.59-1.32] unit decrease	Illumina [at least 621854] (imputed)	N
591	chr17	839619	839620	rs117190579	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17p13.3	NXN	rs117190579-A	0.0183	6E-6		0.1445	[0.082-0.207] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr17	853405	853406	rs4968067	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (female raters)	2,062 European ancestry female individuals	NA	17p13.3	NXN	rs4968067-A	0.331	6E-7		0.221	[0.13-0.31] unit increase	Illumina [7251583] (imputed)	N
591	chr17	874465	874466	rs113611215	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	17p13.3	NXN	rs113611215-G	NR	9E-6		0.205	[0.11-0.3] unit decrease	Illumina [NR] (imputed)	N
591	chr17	908794	908795	rs3263	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	17p13.3	ABR	rs3263-?		4E-6				Illumina [7405822] (imputed)	N
592	chr17	926120	926121	rs2586252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17p13.3	NR	rs2586252-A	NR	4E-13		0.0194	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
592	chr17	926739	926740	rs2663343	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p13.3		rs2663343-A	0.34	7E-26		10.53	z score increase	Affymetrix [9061022] (imputed)	N
592	chr17	926739	926740	rs2663343	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p13.3		rs2663343-A	0.34	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
592	chr17	926739	926740	rs2663343	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p13.3	NR	rs2663343-A	0.3108	3E-13				NR [9056863] (imputed)	N
592	chr17	926739	926740	rs2663343	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.3	ABR	rs2663343-A	0.3124	7E-15		0.0153	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
592	chr17	927515	927516	rs2663339	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17p13.3		rs2663339-?	NR	3E-8				NR [9705931] (imputed)	N
592	chr17	927515	927516	rs2663339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs2663339-?	NR	4E-15				NR [~ 8900000] (imputed)	N
592	chr17	928077	928078	rs2376600	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.3	ABR	rs2376600-G	0.692837	4E-53		0.030753	[0.027-0.035] unit increase	NR [13737936] (imputed)	N
592	chr17	928077	928078	rs2376600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.3		rs2376600-?	NR	2E-51				NR [~ 8900000] (imputed)	N
592	chr17	928077	928078	rs2376600	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs2376600-?	NR	4E-51		0.032655	[0.028-0.037] unit increase	Affymetrix [20259828] (imputed)	N
592	chr17	928077	928078	rs2376600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	ABR	rs2376600-G	0.690015	1E-8	(men)	0.0323695	[0.022-0.043] unit increase	NR [17166351] (imputed)	N
592	chr17	928077	928078	rs2376600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	ABR	rs2376600-G	0.689952	2E-15		0.0280376	[0.021-0.035] unit increase	NR [17166351] (imputed)	N
592	chr17	928077	928078	rs2376600	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	ABR	rs2376600-G	0.689898	2E-7	(women)	0.0241542	[0.014-0.034] unit increase	NR [17166351] (imputed)	N
592	chr17	931496	931496	rs760060673	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs760060673-?	NR	3E-17		0.0251023	[0.019-0.031] unit increase	Affymetrix [20259828] (imputed)	N
592	chr17	943592	943593	rs116911572	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17p13.3	NR	rs116911572-T	0.9831	2E-7		0.0399	[0.025-0.055] unit increase	NR [~ 27400000] (imputed)	N
592	chr17	949259	949260	rs62069674	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17p13.3	NR	rs62069674-A	NR	6E-6	(female)	0.1067	[0.061-0.153] unit increase	Illumina [11133794] (imputed)	N
592	chr17	970251	970252	rs7216092	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17p13.3	ABR	rs7216092-A	0.657	2E-6		0.0324	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
593	chr17	1062991	1062992	rs200668351	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	17p13.3	ABR	rs200668351-A	0.22	2E-6		0.34	unit increase	Illumina [5600000] (imputed)	N
593	chr17	1110837	1110838	rs188411703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	2,969 Hispanic or Latin American individuals	NA	17p13.3	NR	rs188411703-G	0.997607	1E-10		2.269	[1.58-2.96] SD units decrease	Affymetrix, Illumina [23758884] (imputed)	N
593	chr17	1143694	1143695	rs116883886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p13.3		rs116883886-?	NR	2E-8				NR [~ 8900000] (imputed)	N
594	chr17	1196525	1196526	rs113689916	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	17p13.3	NR	rs113689916-?	NR	5E-9	(Quadrant I (Philtrum), Segment 35)	0.1408417	NR unit decrease	NR [7417619] (imputed)	N
594	chr17	1196838	1196839	rs12949373	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17p13.3	NR	rs12949373-?	NR	3E-6		0.0466	[0.027-0.066] unit increase	Illumina [at least 560000] (imputed)	N
594	chr17	1239188	1239189	rs186788172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17p13.3	Intergenic	rs186788172-C	0.999	2E-6	(AA)	0.321	unit increase	Illumina [NR] (imputed)	N
594	chr17	1240273	1240274	rs148799368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17p13.3	NR	rs148799368-A	0.086752	4E-10		0.020603	[0.014-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
594	chr17	1240273	1240274	rs148799368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p13.3	NR	rs148799368-A	0.086821	3E-10		0.020746	[0.014-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
594	chr17	1248465	1248466	rs7266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p13.3	YWHAE	rs7266-T	0.06848	1E-9		0.026750328	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
594	chr17	1250619	1250620	rs118187252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs118187252-?	NR	9E-9				NR [~ 8900000] (imputed)	N
594	chr17	1256073	1256074	rs75543711	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.3	YWHAE	rs75543711-?	NR	5E-8		0.009456	[0.0061-0.0128] unit decrease	Affymetrix [805426] (imputed)	N
594	chr17	1260098	1260098	rs11436001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.3	YWHAE	rs11436001-CA	0.211947	7E-10		0.017978592	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr17	1273540	1273541	rs143821051	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	17p13.3	YWHAE	rs143821051-T	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
594	chr17	1273540	1273541	rs143821051	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	17p13.3	YWHAE	rs143821051-T	NR	8E-6				Illumina [up to 11995908] (imputed)	N
594	chr17	1273645	1273646	rs9890128	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	17p13.3	NR	rs9890128-?	NR	1E-12		1.0713291	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
594	chr17	1273645	1273646	rs9890128	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	17p13.3	NR	rs9890128-?	NR	3E-9		1.1111112		Affymetrix, Illumina [9938587] (imputed)	N
594	chr17	1286742	1286743	rs62087954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.3	YWHAE	rs62087954-G	0.069109	4E-13		0.03238364	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
594	chr17	1290949	1290950	rs56007784	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p13.3	YWHAE	rs56007784-C	NR	1E-7		1.052	[1.03-1.07]	Illumina [6627481] (imputed)	N
594	chr17	1290949	1290950	rs56007784	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	17p13.3	YWHAE	rs56007784-C	NR	1E-9		1.059	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
594	chr17	1294485	1294486	rs16945809	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	17p13.3	YWHAE	rs16945809-A	0.06	2E-6		0.94	unit increase	Illumina [828141]	N
594	chr17	1296091	1296092	rs4790351	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio (MTAG)	19,260 European ancestry individuals	NA	17p13.3	YWHAE	rs4790351-G	0.0942	4E-6		0.0059	[0.0033-0.0084] unit increase	Affymetrix [~ 9500000] (imputed)	N
594	chr17	1297990	1297991	rs9908552	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p13.3	NR	rs9908552-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
594	chr17	1309849	1309850	rs7225165	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17p13.3	YWHAE, CRK, MYO1C	rs7225165-G	0.887	3E-9		1.07	[1.04-1.09]	Illumina [34740186] (imputed)	N
595	chr17	1315509	1315510	rs6502600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p13.3		rs6502600-C	0.364259	4E-10		0.014529272	[0.01-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1316426	1316427	rs6502608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.3	NR	rs6502608-A	0.706827	2E-12		0.014575	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
595	chr17	1320112	1320113	rs9897348	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17p13.3	CRK	rs9897348-C	0.395725	2E-9		0.037037358	[0.025-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
595	chr17	1321115	1321116	rs8068017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17p13.3	CRK	rs8068017-C	0.7007	2E-9		0.02367607	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1321115	1321116	rs8068017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17p13.3	CRK	rs8068017-C	0.7006	2E-9		0.02369169	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1321115	1321116	rs8068017	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17p13.3	CRK	rs8068017-C	0.7006	5E-10		0.0245413	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1322926	1322927	rs61659085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p13.3	RP11-818O24.3	rs61659085-C	0.72339	7E-18		0.02166716	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1322926	1322927	rs61659085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.3	RP11-818O24.3	rs61659085-C	0.723407	8E-25		0.025919026	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr17	1328216	1328217	rs7220504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p13.3	RP11-818O24.3	rs7220504-A	0.693307	9E-10		0.014849295	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1328216	1328217	rs7220504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p13.3	RP11-818O24.3	rs7220504-A	0.693318	5E-12		0.01675823	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1328216	1328217	rs7220504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p13.3	RP11-818O24.3	rs7220504-A	0.693318	2E-9		0.014403525	[0.0097-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1331536	1331537	rs8070290	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17p13.3	CRK	rs8070290-C	0.7142	2E-10		0.02499791	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1333597	1333598	rs12941318	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	17p13.3	CRK	rs12941318-T	0.49	3E-8		0.269	[0.17-0.37] unit decrease	Affymetrix [~ 9800000] (imputed)	N
595	chr17	1346416	1346417	rs12941913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17p13.3	NR	rs12941913-T	NR	2E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
595	chr17	1348303	1348304	rs2063185	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17p13.3	NR	rs2063185-T	0.3141	6E-9		0.0165701	[0.011-0.022] unit increase	Affymetrix [3505788] (imputed)	N
595	chr17	1353919	1353920	rs34457140	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.3	CRK	rs34457140-T		2E-6		0.183	unit decrease	Affymetrix [at least 2696785] (imputed)	N
595	chr17	1353919	1353920	rs34457140	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.3	CRK	rs34457140-T		3E-10		0.163	unit decrease	Affymetrix [at least 2696785] (imputed)	N
595	chr17	1353934	1353935	rs35316912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs35316912-C	0.594578	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
595	chr17	1354732	1354733	rs12938269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17p13.3		rs12938269-T	NR	4E-9		0.0295	[0.02-0.039] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
595	chr17	1357159	1357160	rs7502409	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p13.3	NR	rs7502409-C	0.459801	6E-13		0.0148524	[0.011-0.019] unit decrease	NR [NR]	N
595	chr17	1357159	1357160	rs7502409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs7502409-?	NR	7E-11				NR [~ 8900000] (imputed)	N
595	chr17	1357533	1357534	rs11078446	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	17p13.3	CRK	rs11078446-T	0.5	1E-13		7.39	NR z score decrease	Illumina [at least 900015] (imputed)	N
595	chr17	1357600	1357601	rs548563531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.3	CRK	rs548563531-A	0.00740300000000005	2E-10		0.08499556	[0.059-0.111] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1357750	1357751	rs10852858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.3		rs10852858-?	NR	5E-15				NR [~ 8900000] (imputed)	N
595	chr17	1357750	1357751	rs10852858	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.3	CRK	rs10852858-T	0.4153	7E-12		0.2287	[0.16-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
595	chr17	1359679	1359680	rs7218819	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.3		rs7218819-T	0.3	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
595	chr17	1361362	1361363	rs12950305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p13.3		rs12950305-G	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
595	chr17	1363474	1363475	rs147068743	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17p13.3	Intergenic	rs147068743-A	1.0	5E-7	(AA)	0.637	unit increase	Illumina [NR] (imputed)	N
595	chr17	1367121	1367122	rs6416877	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17p13.3	CRK	rs6416877-G	0.7281	3E-11		0.02704665	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1367351	1367352	rs8066044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs8066044-G	0.726138	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
595	chr17	1367351	1367352	rs8066044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17p13.3	NR	rs8066044-G	0.732024	1E-11		0.014631	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
595	chr17	1367351	1367352	rs8066044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p13.3		rs8066044-A	0.2712	1E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
595	chr17	1367351	1367352	rs8066044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.3	Intergenic	rs8066044-A	0.2712	2E-9	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
595	chr17	1367351	1367352	rs8066044	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17p13.3	CRK	rs8066044-G	0.7331	2E-10		0.02582203	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr17	1371995	1371996	rs2286870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17p13.3		rs2286870-A	NR	3E-14		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
595	chr17	1371995	1371996	rs2286870	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.3	MYO1C	rs2286870-G	0.6454	6E-13		0.192	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
595	chr17	1373517	1373518	rs9905106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17p13.3		rs9905106-T	0.264	2E-9				Affymetrix [10369434] (imputed)	N
595	chr17	1373517	1373518	rs9905106	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.3	MYO1C	rs9905106-T	0.2646	8E-14		0.016	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
595	chr17	1373517	1373518	rs9905106	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	17p13.3	MYO1C	rs9905106-T	0.265	2E-9		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
595	chr17	1373517	1373518	rs9905106	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	17p13.3	MYO1C	rs9905106-T	0.265	6E-6		0.01	[0.0041-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.3	MYO1C	rs9905106-C	0.735041	6E-12		0.017165247	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.3	MYO1C	rs9905106-C	0.735038	2E-19		0.02252001	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs9905106-C	0.688425	7E-17				Affymetrix, Illumina [24649327] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p13.3	NR	rs9905106-C	0.733129	8E-17		0.017876	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs9905106-C	0.707003	1E-21				Affymetrix, Illumina [23114412] (imputed)	N
595	chr17	1373517	1373518	rs9905106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p13.3	NR	rs9905106-C	0.733598	2E-24		0.022774	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
595	chr17	1373517	1373518	rs9905106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.3		rs9905106-?	NR	4E-16				NR [~ 8900000] (imputed)	N
595	chr17	1391796	1391797	rs34582191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.3		rs34582191-?	NR	8E-9				NR [~ 8900000] (imputed)	N
595	chr17	1393786	1393787	rs6502738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.3	MYO1C	rs6502738-G	0.576262	7E-19		0.020476218	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
595	chr17	1396196	1396197	rs4606774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs4606774-C	0.42353	6E-31				Affymetrix, Illumina [17210439] (imputed)	N
595	chr17	1396196	1396197	rs4606774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p13.3	NR	rs4606774-C	0.426348	2E-33		0.023562	[0.02-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
595	chr17	1411596	1411597	rs2286868	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	PITPNA	rs2286868-?	NR	7E-6	(glycine)	0.23392038	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr17	1415909	1415910	rs939563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17p13.3	INPP5K	rs939563-A	0.519	2E-9		0.02163254	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
596	chr17	1460895	1460896	rs140948272	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17p13.3	PITPNA	rs140948272-C	0.99	5E-9	(BDRABS, AA)	0.33	[0.21-0.45] unit increase	Illumina [NR] (imputed)	N
596	chr17	1517913	1517914	rs4790712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs4790712-A	NR	2E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
596	chr17	1517913	1517914	rs4790712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.3	NR	rs4790712-A	NR	4E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
596	chr17	1523966	1523967	rs72820359	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.3	SLC43A2	rs72820359-A	0.0733	4E-11		0.0231	[0.016-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
596	chr17	1529678	1529679	rs78135061	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17p13.3	SLC43A2	rs78135061-A	0.9938	4E-6		1.7147	[0.99-2.44] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr17	1530144	1530145	rs201220420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p13.3	SLC43A2	rs201220420-G	0.018683	9E-10		0.052028567	[0.035-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr17	1530144	1530145	rs201220420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p13.3	SLC43A2	rs201220420-G	0.018682	2E-9		0.050809667	[0.034-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr17	1535053	1535054	rs76187874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.3	SLC43A2	rs76187874-A	0.0333329999999999	9E-14		0.046742547	[0.034-0.059] unit increase	Affymetrix [93095623] (imputed)	N
596	chr17	1535968	1535969	rs113487086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.3	SLC43A2	rs113487086-T	0.033707	2E-12		0.04427405	[0.032-0.057] unit increase	Affymetrix [93095623] (imputed)	N
596	chr17	1537682	1537683	rs57812361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p13.3	SCARF1	rs57812361-C	0.607725	2E-22		0.022554193	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
596	chr17	1537682	1537683	rs57812361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p13.3	SCARF1	rs57812361-C	0.607729	3E-22		0.022428628	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
596	chr17	1538627	1538628	rs3744644	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	17p13.3	SCARF1	rs3744644-G	0.65	6E-9		2.564103	[1.85-3.57]	Affymetrix [508192]	N
596	chr17	1542189	1542190	rs2272011	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCARF1	5,361 Icelandic ancestry individuals	NA	17p13.3		rs2272011-G	0.4543	4E-93		0.365538	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
596	chr17	1566042	1566043	rs62089960	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCARF1	5,361 Icelandic ancestry individuals	NA	17p13.3		rs62089960-C	0.02564	3E-121		1.30128	[1.19-1.41] unit increase	Illumina [7506463] (imputed)	N
596	chr17	1569287	1569287	rs56225588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p13.3	PRPF8	rs56225588-CT	0.809314	2E-11		0.019291863	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr17	1569287	1569287	rs56225588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p13.3	PRPF8	rs56225588-CT	0.809301	5E-12		0.019861074	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr17	1571817	1571818	rs11867415	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	17p13.3	PRPF8	rs11867415-?	NR	5E-6				NR [~ 8000000] (imputed)	N
596	chr17	1571817	1571818	rs11867415	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	17p13.3	PRPF8	rs11867415-?	NR	5E-8				NR [~ 8000000] (imputed)	N
596	chr17	1571817	1571818	rs11867415	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	17p13.3	PRPF8	rs11867415-?	NR	7E-7				NR [~ 8000000] (imputed)	N
597	chr17	1574341	1574342	rs8071756	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17p13.3	PRPF8, RP11-961A15.3	rs8071756-G	0.223671	9E-31	(EA, Scavenger receptor class F member 1)	0.5897	[0.49-0.69] unit increase	Affymetrix [509946]	N
597	chr17	1575871	1575872	rs62089970	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.3	SCARF1	rs62089970-C	0.9759375	7E-60	(SCARF1, 5129_12_3)	1.2764032	[1.13-1.43] unit decrease	Illumina [> 1000000] (imputed)	N
597	chr17	1612776	1612777	rs11078594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p13.3		rs11078594-?	NR	4E-9				NR [~ 8900000] (imputed)	N
597	chr17	1618362	1618363	rs11078597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17p13.3		rs11078597-C	NR	7E-13		0.0183	[0.013-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
597	chr17	1618362	1618363	rs11078597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17p13.3		rs11078597-C	NR	2E-41		0.0342	[0.029-0.039] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
597	chr17	1618362	1618363	rs11078597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p13.3		rs11078597-C	NR	3E-97		0.0548	[0.05-0.06] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
597	chr17	1618362	1618363	rs11078597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17p13.3		rs11078597-C	NR	3E-57		0.0446	[0.039-0.05] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
597	chr17	1618362	1618363	rs11078597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17p13.3		rs11078597-C	NR	6E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
597	chr17	1618362	1618363	rs11078597	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.3	MIR22	rs11078597-T	0.813561	3E-44		0.00419761	[0.0036-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
597	chr17	1618362	1618363	rs11078597	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17p13.3	NR	rs11078597-C	0.1864	3E-64		0.004854	[0.0043-0.0054] unit increase	Affymetrix [NR] (imputed)	N
597	chr17	1618362	1618363	rs11078597	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17p13.3	TLCD2, WDR81	rs11078597-T	0.81	2E-33		12.0	z-score increase	Affymetrix [4311822] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17p13.3	WDR81	rs11078597-T	0.813388	1E-13		0.019015	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17p13.3	C17orf91, MIR22HG	rs11078597-?	NR	1E-12		0.0238	[0.018-0.03] unit increase	Affymetrix [5701386] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.3	NR	rs11078597-C	0.18618100000000004	3E-61		0.0167165	[0.015-0.019] unit increase	Affymetrix [16582909] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p13.3	NR	rs11078597-C	0.185905	1E-25		0.0155961	[0.013-0.019] unit increase	Affymetrix [16585854] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.3	NR	rs11078597-C	0.18618100000000004	8E-55		0.0178274	[0.016-0.02] unit increase	Affymetrix [16582965] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p13.3	NR	rs11078597-C	0.185905	2E-22		0.0167042	[0.013-0.02] unit increase	Affymetrix [16585866] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17p13.3	NR	rs11078597-T	0.813589	3E-9		0.0150877	[0.01-0.02] unit increase	Affymetrix [16583148] (imputed)	N
597	chr17	1618362	1618363	rs11078597	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17p13.3	NR	rs11078597-T	0.813954	5E-9		0.0192985	[0.013-0.026] unit increase	Affymetrix [16585745] (imputed)	N
597	chr17	1618362	1618363	rs11078597	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p13.3	NR	rs11078597-T	0.81363	4E-13		0.019082	[0.014-0.024] unit increase	NR [NR]	N
597	chr17	1618362	1618363	rs11078597	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	17p13.3	MIR22HG	rs11078597-T	NR	6E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
597	chr17	1618362	1618363	rs11078597	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	17p13.3	MIR22HG	rs11078597-T	0.813	7E-10		0.0159921	[0.011-0.021] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
597	chr17	1618362	1618363	rs11078597	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	17p13.3	SERPINF2, WDR81	rs11078597-C	0.18	7E-13	(EA)	0.0205	[0.015-0.026] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr17	1618362	1618363	rs11078597	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	17p13.3	SERPINF2, WDR81	rs11078597-C	0.18	1E-14		0.0204	[0.015-0.026] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr17	1619814	1619815	rs62090014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.3	NR	rs62090014-C	NR	1E-15		0.0602	[0.045-0.075] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1619814	1619815	rs62090014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs62090014-C	NR	2E-15		0.0593	[0.045-0.074] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1619814	1619815	rs62090014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs62090014-C	NR	6E-42		0.1015	[0.087-0.116] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1619814	1619815	rs62090014	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.3	NR	rs62090014-C	NR	2E-26		0.0794	[0.065-0.094] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1622849	1622850	rs12948283	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	17p13.3		rs12948283-G	0.702684	7E-9		0.027027	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
597	chr17	1622849	1622850	rs12948283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.3	NR	rs12948283-C	NR	6E-10		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1622849	1622850	rs12948283	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17p13.3	WDR81	rs12948283-G	0.700976	4E-9		0.0140411	[0.0094-0.0187] unit decrease	Affymetrix [NR] (imputed)	N
597	chr17	1622854	1622854	rs11431553	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17p13.3	NR	rs11431553-A	0.701037	3E-10		0.0138204	[0.0095-0.0181] unit decrease	Affymetrix [15000001]	N
597	chr17	1626477	1626478	rs58360980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.3	WDR81	rs58360980-A	NR	2E-10		0.0197405	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
597	chr17	1626477	1626478	rs58360980	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.3	NR	rs58360980-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
597	chr17	1627084	1627085	rs67735224	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p13.3	NR	rs67735224-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
597	chr17	1630394	1630395	rs59643265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs59643265-?	NR	1E-24				NR [~ 8900000] (imputed)	N
597	chr17	1630991	1630992	rs9912287	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17p13.3		rs9912287-G	0.780688	1E-16		0.0412644	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
597	chr17	1634103	1634104	rs12150338	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	17p13.3	SERPINF2, WDR81	rs12150338-T	0.09	2E-6		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
597	chr17	1634103	1634104	rs12150338	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	17p13.3	PRPF8, MGC14376, SMYD4, SERPINF2, SERPINF1, WDR81	rs12150338-T	NR	7E-7		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr17	1636949	1636950	rs11657394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINF2	5,336 Icelandic ancestry individuals	NA	17p13.3		rs11657394-A	0.08876	4E-12		0.188952	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
597	chr17	1636949	1636950	rs11657394	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.3	WDR81	rs11657394-C	0.924414	1E-24		0.00450895	[0.0036-0.0054] unit increase	Affymetrix [13995440] (imputed)	N
597	chr17	1636949	1636950	rs11657394	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.3	SERPINF2	rs11657394-A	0.077	5E-13	(Alpha-2-antiplasmin, SERPINF2.3024.18.2)	0.35	[0.25-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
597	chr17	1637301	1637302	rs3809872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.3	NR	rs3809872-G	NR	6E-14		0.0214	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1637301	1637302	rs3809872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs3809872-G	NR	3E-10		0.0179	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1637301	1637302	rs3809872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.3	NR	rs3809872-G	NR	2E-16		0.0222	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
597	chr17	1637301	1637302	rs3809872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs3809872-G	NR	2E-35		0.0352	[0.03-0.041] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1637301	1637302	rs3809872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.3	NR	rs3809872-G	NR	2E-13		0.0208	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1639794	1639795	rs550628400	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17p13.3	NR	rs550628400-G	0.006336000000000008	9E-11		0.134374	[0.095-0.174] unit increase	Affymetrix [16577313] (imputed)	N
597	chr17	1639794	1639795	rs550628400	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.3	NR	rs550628400-G	0.0063229999999999675	7E-36		0.0659478	[0.055-0.076] unit increase	Affymetrix [16582909] (imputed)	N
597	chr17	1639794	1639795	rs550628400	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.3	NR	rs550628400-G	0.0063229999999999675	2E-32		0.0701933	[0.058-0.082] unit increase	Affymetrix [16582965] (imputed)	N
597	chr17	1639794	1639795	rs550628400	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	17p13.3	WDR81	rs550628400-G	0.006	2E-8	(EA)	0.075	[0.05-0.1] unit increase	NR [12082474] (imputed)	N
597	chr17	1641034	1641035	rs2287322	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17p13.3	NR	rs2287322-G	0.22249399999999997	1E-8		0.00870892	[0.0057-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
597	chr17	1641034	1641035	rs2287322	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p13.3	NR	rs2287322-G	0.22292199999999995	3E-42		0.0178425	[0.015-0.02] unit increase	Affymetrix [16582621] (imputed)	N
597	chr17	1641034	1641035	rs2287322	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p13.3	NR	rs2287322-G	0.22292199999999995	7E-41		0.018776	[0.016-0.022] unit increase	Affymetrix [16582614] (imputed)	N
597	chr17	1646650	1646651	rs7212936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	17p13.3		rs7212936-C	0.691413	2E-14		0.0310414	[0.023-0.039] unit increase	Illumina [13474682] (imputed)	N
597	chr17	1646650	1646651	rs7212936	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17p13.3	SERPINF2	rs7212936-A	0.4519	2E-8		0.0182	[0.012-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
597	chr17	1646650	1646651	rs7212936	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	17p13.3	SERPINF2	rs7212936-A	0.4954	4E-7		0.020175	[0.012-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
597	chr17	1646650	1646651	rs7212936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	17p13.3	SERPINF2	rs7212936-?	NR	2E-11		0.03237	[0.023-0.042] unit increase	Illumina [6108953] (imputed)	N
597	chr17	1650124	1650125	rs4525526	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17p13.3	NR	rs4525526-C	0.21885500000000002	3E-20		0.0334533	[0.026-0.041] unit increase	Affymetrix [16577313] (imputed)	N
597	chr17	1650417	1650418	rs141696263	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	17p13.3	SERPINF2	rs141696263-A	0.48	5E-11		0.02182		Illumina [243345]	N
597	chr17	1657072	1657073	rs8074026	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17p13.3		rs8074026-C	0.75317	4E-6		0.035809	[0.021-0.051] unit increase	Affymetrix [15580782] (imputed)	N
597	chr17	1657072	1657073	rs8074026	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17p13.3		rs8074026-C	0.75317	9E-7		0.038733	[0.023-0.054] unit increase	Affymetrix [15580782] (imputed)	N
597	chr17	1657072	1657073	rs8074026	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p13.3	NR	rs8074026-?	NR	4E-17				Affymetrix [NR]	N
597	chr17	1657652	1657653	rs1057335	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	17p13.3	SERPINF2	rs1057335-A	0.198	2E-6		0.73	[0.642 - 0.831]	Illumina [5398302] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	1E-18		0.0278	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	3E-18		0.0275	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	1E-11		0.0214	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	2E-12		0.0212	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	9E-53		0.0482	[0.042-0.054] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1657652	1657653	rs1057335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.3	NR	rs1057335-A	NR	4E-34		0.0384	[0.032-0.045] unit increase	Affymetrix [9000000] (imputed)	N
597	chr17	1665423	1665424	rs58697961	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINF1	5,367 Icelandic ancestry individuals	NA	17p13.3		rs58697961-A	0.338	7E-85		0.374819	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
597	chr17	1666252	1666253	rs62088172	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINF1	5,344 Icelandic ancestry individuals	NA	17p13.3		rs62088172-T	0.3395	1E-89		0.323647	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
597	chr17	1666252	1666253	rs62088172	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.3	SERPINF1	rs62088172-T	0.345	5E-65	(Pigment epithelium-derived factor, SERPINF1.7735.17.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
597	chr17	1666252	1666253	rs62088172	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.3	SERPINF1	rs62088172-T	0.345	2E-70	(Pigment epithelium-derived factor, SERPINF1.9211.19.3)	0.44	[0.38-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
597	chr17	1667673	1667674	rs12450371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p13.3		rs12450371-T	NR	3E-23		0.0134	[0.011-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
597	chr17	1668452	1668452	rs34386380	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.3	NR	rs34386380-CT	0.384	2E-35	(Pigment epithelium-derived factor, SERPINF1.9211.19.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
597	chr17	1668452	1668452	rs34386380	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.3	NR	rs34386380-CT	0.384	1E-36	(Pigment epithelium-derived factor, SERPINF1.7735.17.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
597	chr17	1670808	1670809	rs6502953	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	PEDF plasma levels	400 French ancestry individuals	NA	17p13.3		rs6502953-G	NR	3E-9		0.094	[0.063-0.125] ng/mL decrease	Illumina [5201092] (imputed)	N
597	chr17	1673275	1673276	rs1136287	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.3	SERPINF1	rs1136287-T	0.665	5E-49	(SERPINF1, 7735_17_3)	0.3732137	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
597	chr17	1673275	1673276	rs1136287	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.3	SERPINF1	rs1136287-T	0.665	3E-48	(SERPINF1, 9211_19_3)	0.3710637	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
598	chr17	1782951	1782952	rs5030755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p13.3		rs5030755-G	NR	2E-9		0.0218	[0.015-0.029] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.3	RPA1	rs5030755-G	0.118424	4E-19		0.03097342	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p13.3	RPA1	rs5030755-G	0.118361	6E-12		0.023870222	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p13.3	RPA1	rs5030755-G	0.118418	5E-17		0.025979	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p13.3	RPA1	rs5030755-G	0.118436	2E-10		0.021741422	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs5030755-G	0.112389	6E-17				Affymetrix, Illumina [24246363] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p13.3	NR	rs5030755-G	0.117091	2E-19		0.02556	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs5030755-G	0.113725	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
598	chr17	1782951	1782952	rs5030755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p13.3	NR	rs5030755-G	0.11814	6E-13		0.021578	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
598	chr17	1782951	1782952	rs5030755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p13.3		rs5030755-?	NR	3E-10				NR [~ 8900000] (imputed)	N
598	chr17	1782951	1782952	rs5030755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17p13.3	RPA1	rs5030755-G	0.118	9E-11		0.03543949	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr17	1794207	1794208	rs3826538	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	17p13.3	RPA1	rs3826538-T	NR	2E-6	(WAP, All)	0.35	[0.21-0.49] unit decrease	Illumina [7600000] (imputed)	N
598	chr17	1819510	1819511	rs66506713	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17p13.3	RPA1, RTN4RL1	rs66506713-T	0.369	8E-6		1.05897	[1.03-1.08]	NR [9372253] (imputed)	N
598	chr17	1820749	1820750	rs882495	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	RPA1	rs882495-?	NR	5E-6	(uric acid)	0.78920263	[0.45-1.13] unit increase	Affymetrix [at least 2500000] (imputed)	N
598	chr17	1824304	1824305	rs4790292	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17p13.3		rs4790292-C	0.85	4E-9				NR [NR] (imputed)	N
598	chr17	1824304	1824305	rs4790292	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17p13.3		rs4790292-C	0.85	6E-24		0.021	% increase	NR [NR] (imputed)	N
598	chr17	1824304	1824305	rs4790292	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17p13.3	RTN4RL1	rs4790292-C	0.846299	1E-17		0.0163291	[0.013-0.02] unit increase	Affymetrix [12370749]	N
598	chr17	1824304	1824305	rs4790292	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs4790292-?	NR	4E-22				Affymetrix [~ 8270000] (imputed)	N
598	chr17	1824304	1824305	rs4790292	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17p13.3	NA	rs4790292-A	0.1476	7E-20		0.0224	[0.017-0.027] unit decrease	NR [~ 27400000] (imputed)	N
598	chr17	1830355	1830356	rs139142374	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	17p13.3	NR	rs139142374-T	0.008024	5E-6		0.7783	[0.45-1.11] unit decrease	Illumina [10677593] (imputed)	N
599	chr17	1835481	1835482	rs4790841	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	17p13.3	RTN4RL1	rs4790841-C	0.849	3E-8		0.92969	[0.9-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
599	chr17	1837169	1837169	rs111279065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p13.3		rs111279065-TA	NR	1E-19		0.0262	[0.021-0.032] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
599	chr17	1837169	1837169	rs111279065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17p13.3		rs111279065-TA	NR	5E-19		0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
599	chr17	1843188	1843189	rs3923783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17p13.3	NA	rs3923783-A	0.1784	4E-23		0.0222	[0.018-0.027] unit decrease	NR [~ 27400000] (imputed)	N
599	chr17	1843188	1843189	rs3923783	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17p13.3	NA	rs3923783-A	0.1784	4E-23		0.0222	[0.018-0.027] unit decrease	NR [~ 27400000] (imputed)	N
599	chr17	1844518	1844519	rs4239060	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17p13.3	NR	rs4239060-A	0.185	9E-16		0.025590789	[0.019-0.032] unit decrease	Affymetrix [10549349] (imputed)	N
599	chr17	1846830	1846831	rs4516268	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	17p13.3	RTN4RL1	rs4516268-C	NR	2E-9		0.009529	[0.0064-0.0126] unit decrease	Affymetrix [10061374] (imputed)	N
599	chr17	1846830	1846831	rs4516268	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p13.3	NR	rs4516268-C	0.805175	2E-8		0.0139919	[0.0091-0.0188] unit increase	NR [NR]	N
599	chr17	1846830	1846831	rs4516268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.3		rs4516268-?	NR	4E-22				NR [~ 8900000] (imputed)	N
599	chr17	1849661	1849662	rs75848890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs75848890-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr17	1862767	1862768	rs6503107	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	17p13.3		rs6503107-C	NR	4E-6		2.497	[1.44-3.55] unit increase	NR [534934]	N
599	chr17	1864748	1864749	rs9646401	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs9646401-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
599	chr17	1865590	1865591	rs62069176	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Type 2 diabetes	748 Chinese ancestry cases, 4,983 Chinese ancestry controls	NA	17p13.3	RTN4RL1	rs62069176-T	0.7	3E-7		1.5873016		Illumina [8045193] (imputed)	N
599	chr17	1868034	1868035	rs9675270	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	17p13.3	RTN4RL1	rs9675270-?	NR	1E-7		4.64	[2.64-8.18]	Illumina [9380034] (imputed)	N
599	chr17	1885124	1885125	rs11651343	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	17p13.3	RTN4RL1	rs11651343-T	0.0817	5E-6		0.9039	[0.52-1.29] unit increase	Illumina [500508]	N
599	chr17	1902584	1902585	rs8076845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs8076845-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
599	chr17	1909179	1909180	rs7217107	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17p13.3	NR	rs7217107-A	0.6889	4E-9		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
599	chr17	1917473	1917474	rs9905172	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	17p13.3	NR	rs9905172-?	NR	2E-6		0.017	[0.01-0.024] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
599	chr17	1921996	1921997	rs117239777	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		17p13.3	intergenic	rs117239777-T	0.017	9E-6		1.657	[0.94-2.38] unit decrease	Illumina [640625] (imputed)	N
599	chr17	1924910	1924911	rs11656601	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	17p13.3	RTN4RL1	rs11656601-T	0.25	2E-6		3.509	[2.08-4.94] unit decrease	Illumina [NR] (imputed)	N
599	chr17	1929717	1929718	rs34290270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Intracerebral hemorrhage	1,935 European ancestry cases, 471,578 European ancestry controls, 1,456 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	17p13.3		rs34290270-T	NR	3E-9		0.1767	[0.12-0.23] unit increase	Affymetrix, Illumina [25841532] (imputed)	N
599	chr17	1939542	1939543	rs3752962	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	17p13.3	DPH1	rs3752962-T	NR	8E-7		0.0195487	[0.012-0.027] unit decrease	Illumina [13520550] (imputed)	N
599	chr17	1941047	1941048	rs12451788	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	17p13.3	DPH1, RTN4RL1, OVCA2	rs12451788-?	0.610	1E-6		2.7	[1.79-4]	Illumina [1556551]	N
599	chr17	1942860	1942861	rs7207466	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17p13.3	NR	rs7207466-C	0.270168	6E-10		0.0134091	[0.0092-0.0176] unit increase	Affymetrix [15000001]	N
599	chr17	1944780	1944781	rs200231675	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	17p13.3	DPH1	rs200231675-?	NR	3E-7	(EAS)	323.9	[201.6-446.2] unit increase	Illumina [377173]	N
599	chr17	1958535	1958536	rs4455005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17p13.3		rs4455005-A	NR	5E-13		0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
599	chr17	1958535	1958536	rs4455005	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	17p13.3	HIC1	rs4455005-?	NR	8E-10		0.0446	NR L increase	Affymetrix [9390170] (imputed)	N
599	chr17	1958535	1958536	rs4455005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.3	HIC1	rs4455005-A	0.640392	5E-54		0.036917035	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr17	1958535	1958536	rs4455005	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.3	intergenic	rs4455005-G	0.633	9E-12		0.1788	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
599	chr17	1958535	1958536	rs4455005	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17p13.3	HIC1	rs4455005-A	0.6408	4E-24		0.03903548	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr17	1958535	1958536	rs4455005	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p13.3	HIC1	rs4455005-A	0.6408	4E-15		0.03022036	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr17	1958608	1958609	rs4480845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.3	HIC1	rs4480845-C	0.641072	3E-25		0.024453165	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr17	1958608	1958609	rs4480845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p13.3	HIC1	rs4480845-C	0.641089	2E-16		0.0153202	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr17	1958608	1958609	rs4480845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.3		rs4480845-?	NR	4E-25				NR [~ 8900000] (imputed)	N
599	chr17	1958608	1958609	rs4480845	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	17p13.3	HIC1	rs4480845-?	NR	2E-6		0.012	[0.0071-0.0169] unit increase	Illumina [5527232] (imputed)	N
599	chr17	1958608	1958609	rs4480845	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p13.3	NR	rs4480845-T	0.3774	3E-8		0.0334	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
599	chr17	1959825	1959826	rs112963849	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	17p13.3		rs112963849-A	0.0823165	2E-8		1.23		Affymetrix [15650645] (imputed)	N
599	chr17	1965277	1965278	rs67457628	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17p13.3	SMG6	rs67457628-T	NR	7E-6		1.0630382	NR	Affymetrix, Illumina [8278136] (imputed)	N
600	chr17	1966251	1966252	rs3803809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.3		rs3803809-?	NR	2E-8				NR [~ 8900000] (imputed)	N
600	chr17	1966456	1966457	rs1048483	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17p13.3	NR	rs1048483-?	NR	9E-27				NR [up to 7000000]	N
600	chr17	1966456	1966457	rs1048483	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17p13.3	NR	rs1048483-?	NR	5E-28				NR [up to 7000000]	N
600	chr17	1966456	1966457	rs1048483	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	17p13.3	SMG6	rs1048483-T	NR	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [12923718] (imputed)	N
600	chr17	1966456	1966457	rs1048483	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	17p13.3	NR	rs1048483-?	NR	1E-9		0.0612	[0.042-0.081] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
600	chr17	1966919	1966920	rs4790310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17p13.3		rs4790310-T	NR	8E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
600	chr17	1966919	1966920	rs4790310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17p13.3	NR	rs4790310-T	NR	3E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
600	chr17	1967500	1967501	rs9894634	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17p13.3	SMG6	rs9894634-T	0.6007	2E-8		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
600	chr17	1969911	1969912	rs16951879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs16951879-?	NR	3E-14				NR [~ 8900000] (imputed)	N
600	chr17	1970200	1970201	rs4790870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs4790870-A	0.538586	7E-12				Affymetrix, Illumina [24332387] (imputed)	N
600	chr17	1970200	1970201	rs4790870	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	17p13.3	SMG6	rs4790870-A	0.6102	3E-10		0.012981379	[0.0089-0.017] unit increase	Affymetrix [11514654] (imputed)	N
600	chr17	1970268	1970269	rs8068234	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.3	SMG6	rs8068234-G	0.984287	9E-13		0.0527399	[0.038-0.067] unit decrease	NR [13737936] (imputed)	N
600	chr17	1970897	1970898	rs2131704	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17p13.3		rs2131704-C	0.42	2E-8				Affymetrix [10369434] (imputed)	N
600	chr17	1975656	1975657	rs8067305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17p13.3		rs8067305-A	NR	4E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
600	chr17	1975656	1975657	rs8067305	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17p13.3	NR	rs8067305-A	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
600	chr17	1975656	1975657	rs8067305	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	17p13.3	SMG6	rs8067305-?	NR	1E-6		0.011	[0.0064-0.0156] unit increase	Illumina [5527232] (imputed)	N
600	chr17	1978962	1978963	rs9303241	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.3	SMG6	rs9303241-T		2E-7		0.204	unit increase	Affymetrix [at least 2696785] (imputed)	N
600	chr17	1978962	1978963	rs9303241	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.3	SMG6	rs9303241-T		1E-9		0.159	unit increase	Affymetrix [at least 2696785] (imputed)	N
600	chr17	1981479	1981480	rs4790312	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	17p13.3	NR	rs4790312-T	0.3566	9E-7		0.0197	[0.012-0.028] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
600	chr17	1982789	1982790	rs12952051	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.3	SMG6	rs12952051-T	0.4188	4E-12		0.244	[0.18-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
600	chr17	1985049	1985050	rs8076897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17p13.3		rs8076897-C	NR	5E-15		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
600	chr17	1985842	1985843	rs8069947	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (forehead protrusion 1)	6,169 Latin American individuals	NA	17p13.3		rs8069947-?	NR	1E-9				Illumina [8703729] (imputed)	N
600	chr17	1985842	1985843	rs8069947	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	17p13.3		rs8069947-?	NR	2E-7				Illumina [8703729] (imputed)	N
600	chr17	1985842	1985843	rs8069947	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	17p13.3	NR	rs8069947-C	NR	1E-6		0.007922	[0.0047-0.0111] unit increase	NR [11010159] (imputed)	N
600	chr17	1985842	1985843	rs8069947	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17p13.3	NR	rs8069947-C	NR	3E-10		0.00660598	[0.0045-0.0087] unit increase	NR [11010159] (imputed)	N
600	chr17	1985842	1985843	rs8069947	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17p13.3	NR	rs8069947-C	NR	7E-9	(adjusted for BMI)	0.005996	[0.004-0.008] unit increase	NR [11010159] (imputed)	N
600	chr17	1994070	1994071	rs3760230	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	17p13.3		rs3760230-?	NR	3E-8		0.0051023	[0.0033-0.0069] unit increase	NR [NR]	N
600	chr17	1994070	1994071	rs3760230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p13.3	SMG6, RP11-667K14.5	rs3760230-C	0.421426	4E-13		0.016371831	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr17	1994070	1994071	rs3760230	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p13.3	SMG6	rs3760230-C	0.420735	8E-12		0.0136187	[0.0097-0.0175] unit increase	Affymetrix [NR] (imputed)	N
600	chr17	1994965	1994966	rs4790873	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17p13.3		rs4790873-G	0.41	2E-22				Affymetrix [10369434] (imputed)	N
600	chr17	1995176	1995177	rs4790874	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p13.3		rs4790874-C	0.47	6E-17		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
600	chr17	1995176	1995177	rs4790874	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17p13.3	NR	rs4790874-T	0.532	2E-13		0.00802647	[0.0059-0.0102] unit increase	NR [9732723] (imputed)	N
600	chr17	1995176	1995177	rs4790874	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17p13.3	NR	rs4790874-T	0.532	8E-12		0.01744911	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
600	chr17	1995176	1995177	rs4790874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	17p13.3		rs4790874-?	NR	4E-10				NR [~ 8900000] (imputed)	N
600	chr17	1995253	1995254	rs4790877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17p13.3		rs4790877-A	NR	2E-39		0.0287	[0.024-0.033] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
600	chr17	1997443	1997444	rs4061659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p13.3		rs4061659-C	NR	3E-38		0.0257	[0.022-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
600	chr17	1997443	1997444	rs4061659	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.3	SMG6	rs4061659-G	0.4199	6E-11		0.0922	[0.064-0.12] unit increase	Affymetrix [~ 11900000] (imputed)	N
600	chr17	2000532	2000533	rs118170056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p13.3		rs118170056-T	NR	3E-25		0.0429	[0.035-0.051] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
600	chr17	2001824	2001825	rs7225843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.3	SMG6, RP11-667K14.5	rs7225843-C	0.202963	4E-20		0.026946425	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr17	2001824	2001825	rs7225843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs7225843-C	0.211516	2E-40				Affymetrix, Illumina [24649327] (imputed)	N
600	chr17	2001824	2001825	rs7225843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p13.3	NR	rs7225843-C	0.203083	9E-43		0.03151	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
600	chr17	2001824	2001825	rs7225843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p13.3	NR	rs7225843-C	0.203156	3E-20		0.022083	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
600	chr17	2001824	2001825	rs7225843	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17p13.3	SMG6, RP11-667K14.5	rs7225843-C	0.2023	7E-13		0.03204602	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr17	2005135	2005136	rs9914578	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17p13.3	NR	rs9914578-C	0.79017821716713	5E-8		0.01795047	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
600	chr17	2005135	2005136	rs9914578	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.3	SMG6	rs9914578-G	0.229	2E-8		0.02	[0.013-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
600	chr17	2005135	2005136	rs9914578	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.3	SMG6	rs9914578-G	0.212	8E-8	(EA, men)	0.026	[0.017-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
600	chr17	2005135	2005136	rs9914578	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.3	SMG6	rs9914578-G	0.211	9E-8	(EA)	0.02	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
600	chr17	2005255	2005258	rs71902577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.3	SMG6	rs71902577-C	0.202745	1E-35		0.03410689	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr17	2005255	2005258	rs71902577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.3	SMG6	rs71902577-C	0.202707	1E-18		0.024212927	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr17	2005261	2005264	rs539275859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17p13.3		rs539275859-C	NR	2E-22		0.0237	[0.019-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
600	chr17	2005261	2005264	rs539275859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17p13.3		rs539275859-C	NR	3E-14		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
600	chr17	2007609	2007610	rs140760578	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.3	SMG6	rs140760578-G	0.988979	2E-10		0.0556689	[0.038-0.073] unit increase	NR [13737936] (imputed)	N
600	chr17	2007825	2007826	rs9915112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs9915112-G	0.212204	1E-31				Affymetrix, Illumina [23467995] (imputed)	N
600	chr17	2007825	2007826	rs9915112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17p13.3	NR	rs9915112-G	0.203142	4E-30		0.026556	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
600	chr17	2008277	2008278	rs9900967	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17p13.3	SMG6	rs9900967-A	0.5533	1E-10		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
600	chr17	2010317	2010318	rs2019872	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p13.3	NR	rs2019872-C	NR	7E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
600	chr17	2012095	2012096	rs117265681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p13.3	SMG6	rs117265681-T	0.050492	6E-11		0.03326647	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
600	chr17	2012095	2012096	rs117265681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p13.3	SMG6	rs117265681-T	0.05049	3E-10		0.032048862	[0.022-0.042] unit increase	Affymetrix [93095623] (imputed)	N
600	chr17	2014848	2014849	rs3760232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17p13.3		rs3760232-A	NR	3E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
600	chr17	2014848	2014849	rs3760232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17p13.3	NR	rs3760232-A	NR	2E-9		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
600	chr17	2014848	2014849	rs3760232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs3760232-A	0.211722	1E-18				Affymetrix, Illumina [23114412] (imputed)	N
600	chr17	2014983	2014984	rs3760231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.3		rs3760231-?	NR	1E-34				NR [~ 8900000] (imputed)	N
600	chr17	2017785	2017786	rs2641438	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	17p13.3	SMG6	rs2641438-G	0.3	3E-9		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
600	chr17	2020988	2020989	rs2760740	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17p13.3	SMG6	rs2760740-C	0.300578	1E-10		1.05	[1.04-1.07]	NR [8126035] (imputed)	N
600	chr17	2026417	2026418	rs35401268	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs35401268-?	NR	2E-30		0.0253946	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
600	chr17	2026417	2026418	rs35401268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	SMG6	rs35401268-GA	0.316585	4E-26	(men)	0.0552294	[0.044-0.066] unit decrease	NR [17166351] (imputed)	N
600	chr17	2026417	2026418	rs35401268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	SMG6	rs35401268-GA	0.314995	2E-56		0.0567881	[0.05-0.064] unit decrease	NR [17166351] (imputed)	N
600	chr17	2026417	2026418	rs35401268	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.3	SMG6	rs35401268-GA	0.313607	2E-34	(women)	0.0603701	[0.051-0.07] unit decrease	NR [17166351] (imputed)	N
600	chr17	2027643	2027644	rs2760734	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 51)	3,566 European ancestry individuals	4,680 European ancestry individuals	17p13.3		rs2760734-T	0.172882782	2E-9				Illumina [7417619] (imputed)	N
600	chr17	2028105	2028106	rs2760751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p13.3		rs2760751-?	NR	2E-19				NR [~ 8900000] (imputed)	N
600	chr17	2030506	2030507	rs2641431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.3	SMG6	rs2641431-G	NR	1E-8		0.0205255	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
600	chr17	2030506	2030507	rs2641431	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.3	SMG6	rs2641431-G	NR	2E-8		0.0204612	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
600	chr17	2032311	2032312	rs62068034	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17p13.3	SMG6	rs62068034-A	0.983	5E-7		0.118	[0.071-0.165] unit decrease	Affymetrix [7947838] (imputed)	N
600	chr17	2034274	2034275	rs11652757	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17p13.3	RTN4RL1, DPH1, OVCA2, HIC1, SMG6, SRR, TSR1, SGSM2	rs11652757-?		2E-15				NR [7428630] (imputed)	N
600	chr17	2045272	2045273	rs8072532	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17p13.3	SMG6	rs8072532-?	NR	5E-19		0.0463997	[0.036-0.057] unit increase	Illumina [4804024] (imputed)	N
600	chr17	2045272	2045273	rs8072532	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	17p13.3	SMG6	rs8072532-G	NR	5E-7				Affymetrix, Illumina [12061510] (imputed)	N
600	chr17	2045272	2045273	rs8072532	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	17p13.3	SMG6	rs8072532-G	NR	3E-6		0.07	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
600	chr17	2045819	2045819	rs557139647	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs557139647-?	NR	3E-21		0.068774	[0.054-0.083] unit decrease	Affymetrix [20259828] (imputed)	N
600	chr17	2047563	2047564	rs8064885	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.3		rs8064885-A	0.45	8E-34		12.13	z score increase	Affymetrix [9061022] (imputed)	N
600	chr17	2047563	2047564	rs8064885	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p13.3	NR	rs8064885-A	0.4188	1E-17				NR [9056863] (imputed)	N
600	chr17	2048610	2048611	rs6503293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p13.3	SMG6	rs6503293-A	0.285199	1E-19		0.022356719	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr17	2048712	2048713	rs7209460	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.3	SMG6	rs7209460-C	0.301646	6E-143		0.0515381	[0.048-0.056] unit decrease	NR [13737936] (imputed)	N
600	chr17	2048712	2048713	rs7209460	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	17p13.3	SMG6	rs7209460-T	0.485208	2E-12		0.0529	[0.038-0.068] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
600	chr17	2048712	2048713	rs7209460	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p13.3	NR	rs7209460-T	0.6995	1E-10	(European)	0.0438	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
600	chr17	2048712	2048713	rs7209460	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17p13.3	SMG6	rs7209460-T	0.688	1E-14		0.053	[0.039-0.067] unit increase	Affymetrix [7947838] (imputed)	N
600	chr17	2053919	2053920	rs11657636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.3		rs11657636-?	NR	1E-140				NR [~ 8900000] (imputed)	N
600	chr17	2058206	2058207	rs12449843	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	17p13.3	NR	rs12449843-?		3E-8				NR [7428630] (imputed)	N
600	chr17	2058206	2058207	rs12449843	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17p13.3	NR	rs12449843-G	0.622	4E-10		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
600	chr17	2058349	2058349	rs35087650	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	17p13.3	NR	rs35087650-ATT	0.26	1E-9		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 17000000] (imputed)	N
600	chr17	2064701	2064702	rs2873195	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p13.3	NR	rs2873195-A	0.3127	4E-11		0.0406	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
600	chr17	2068931	2068932	rs4790881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17p13.3		rs4790881-A	NR	6E-9		0.0513	[0.034-0.069] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
600	chr17	2068931	2068932	rs4790881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17p13.3		rs4790881-A	NR	3E-11		0.0613	[0.043-0.079] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
600	chr17	2068931	2068932	rs4790881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	17p13.3		rs4790881-A	NR	7E-10		0.0515	[0.035-0.068] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
600	chr17	2068931	2068932	rs4790881	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	17p13.3	SMG6	rs4790881-?	NR	1E-12		0.1	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
600	chr17	2068931	2068932	rs4790881	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17p13.3	SMG6	rs4790881-A	0.69	1E-18		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
600	chr17	2072073	2072074	rs112415631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.3	NR	rs112415631-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
600	chr17	2075026	2075027	rs370221402	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17p13.3	SMG6	rs370221402-C	0.2386	2E-10		0.02797022	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
600	chr17	2088848	2088852	rs113348108	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	17p13.3	SMG6	rs113348108-D	0.314	6E-8		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
600	chr17	2095953	2095954	rs1563966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	SMG6	rs1563966-A	NR	3E-8		0.0165891	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
600	chr17	2096383	2096384	rs1466389	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17p13.3		rs1466389-?	NR	2E-13				NR [9705931] (imputed)	N
601	chr17	2099182	2099183	rs16952006	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17p13.3	NR	rs16952006-T	0.1051	3E-6	(EA)	0.0524	[0.031-0.074] unit decrease	Illumina [~ 11800000] (imputed)	N
601	chr17	2102436	2102437	rs16952009	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p13.3		rs16952009-T	0.35	2E-31		11.65	z score increase	Affymetrix [9061022] (imputed)	N
601	chr17	2102436	2102437	rs16952009	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p13.3	NR	rs16952009-T	0.3465	1E-17				NR [9056863] (imputed)	N
601	chr17	2107089	2107090	rs17761723	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p13.3		rs17761723-T	0.35	5E-71		17.82	z score increase	Affymetrix [9061022] (imputed)	N
601	chr17	2107089	2107090	rs17761723	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17p13.3	MAST4	rs17761723-?		4E-12				NR [7428630] (imputed)	N
601	chr17	2107089	2107090	rs17761723	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	17p13.3	SMG6	rs17761723-T	0.346	3E-8		0.047	[0.029-0.065] unit increase	Affymetrix, Illumina [11733371] (imputed)	N
601	chr17	2114067	2114068	rs58146172	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	17p13.3	NR	rs58146172-?	NR	1E-10		1.0653484	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
601	chr17	2117944	2117945	rs2281727	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17p13.3	SMG6	rs2281727-G	0.37	6E-11		0.06	[0.054-0.066] unit increase	Illumina [6108953] (imputed)	N
601	chr17	2117944	2117945	rs2281727	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	17p13.3	SMG6	rs2281727-G	NR	1E-7		1.07	[1.04-1.10]	Illumina [575000] (imputed)	N
601	chr17	2125130	2125131	rs1231208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	SMG6	rs1231208-A	NR	2E-9		0.0195879	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
601	chr17	2125449	2125450	rs1231207	30779856	Lu HF	2019-02-19	J Bone Miner Res	A meta-analysis of genome-wide association studies identifies three loci associated with stiffness index of the calcaneus.	Calcaneus stiffness index	7,742 Taiwanese ancestry individuals	2,955 Korean ancestry individuals	17p13.3	SMG6	rs1231207-?	0.5648	2E-9		0.0901	[0.061-0.119] unit decrease	Affymetrix [~ 6100000] (imputed)	N
601	chr17	2125604	2125605	rs1231206	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p13.3	intergenic	rs1231206-A	0.37	9E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
601	chr17	2126503	2126504	rs216172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	SMG6	rs216172-C	NR	2E-10		0.019473	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
601	chr17	2126503	2126504	rs216172	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	17p13.3	SMG6	rs216172-C	0.349997	5E-7		1.05	[1.03- 1.07]	Affymetrix, Illumina [8600000] (imputed)	N
601	chr17	2126503	2126504	rs216172	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p13.3	SMG6, SRR	rs216172-C	0.37	1E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
601	chr17	2130591	2130592	rs4790887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs4790887-A	0.671618	6E-10				Affymetrix, Illumina [24653286] (imputed)	N
601	chr17	2133204	2133205	rs9896535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs9896535-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
601	chr17	2133204	2133205	rs9896535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.3		rs9896535-?	NR	8E-12				NR [~ 8900000] (imputed)	N
601	chr17	2133249	2133250	rs9914266	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	17p13.3	SMG6	rs9914266-C	0.35	3E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [8600000] (imputed)	N
601	chr17	2133570	2133571	rs28611065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p13.3	SMG6	rs28611065-C	0.182663	2E-11		0.019131098	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr17	2133570	2133571	rs28611065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs28611065-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
601	chr17	2136064	2136065	rs7217226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17p13.3	NA	rs7217226-T	0.6555	1E-14		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
601	chr17	2136064	2136065	rs7217226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17p13.3	NA	rs7217226-T	0.656	9E-16		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
601	chr17	2136064	2136065	rs7217226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17p13.3	NA	rs7217226-T	0.656	9E-16		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
601	chr17	2139653	2139654	rs2273984	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	SMG6	rs2273984-C	NR	1E-11		0.0199998	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
601	chr17	2140382	2140384	rs374387539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p13.3		rs374387539-A	NR	9E-15		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
601	chr17	2140382	2140384	rs374387539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.3	SMG6	rs374387539-A	0.626962	2E-29		0.027996108	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr17	2140667	2140668	rs216215	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	17p13.3	SMG6	rs216215-T	0.42	1E-6	(Upper forehead slant angle)	0.723	[NR] unit decrease	Affymetrix [311944]	N
601	chr17	2143459	2143460	rs10852932	19584346	Vasan RS	2009-07-08	JAMA	Genetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.	Aortic root size	12,612 European ancestry individuals	4,094 European ancestry individuals	17p13.3	SMG6, SRR, TSR1, SGSM2	rs10852932-T	0.36	2E-11		0.03	[0.02-0.04] cm increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
601	chr17	2145192	2145193	rs11078884	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	17p13.3	SMG6, SRR, AJ276246	rs11078884-C	NR	3E-6		0.2234	unit increase	Illumina [5767231] (imputed)	N
601	chr17	2146421	2146422	rs9892016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	17p13.3		rs9892016-C	0.36065365	2E-8		0.063968174	[0.042-0.086] unit increase	Illumina [13134967] (imputed)	N
601	chr17	2149227	2149228	rs12945851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	17p13.3		rs12945851-T	NR	9E-9		0.0492	[0.032-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
601	chr17	2149227	2149228	rs12945851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p13.3	SMG6	rs12945851-T	0.108982	2E-10		0.022949746	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr17	2149227	2149228	rs12945851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p13.3	SMG6	rs12945851-T	0.10897	9E-13		0.025600698	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr17	2153256	2153257	rs7213347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs7213347-C	0.618838	7E-73				Affymetrix, Illumina [24588908] (imputed)	N
601	chr17	2153256	2153257	rs7213347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17p13.3		rs7213347-?	NR	2E-16				NR [~ 8900000] (imputed)	N
601	chr17	2153256	2153257	rs7213347	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p13.3	NR	rs7213347-C	0.6843	7E-9	(European)	0.0393	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
601	chr17	2156452	2156453	rs7216638	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	17p13.3	LOC101927839, SMG6, SNORD91A, SNORD91B, SRR, TSR1	rs7216638-?	NR	5E-10		1.067	[1.05-1.09]	Illumina [8000000] (imputed)	N
601	chr17	2157773	2157774	rs12943566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17p13.3		rs12943566-A	0.346	7E-20				Affymetrix [10369434] (imputed)	N
601	chr17	2157773	2157774	rs12943566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17p13.3	SMG6	rs12943566-G	0.6526	5E-33		0.04590243	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
601	chr17	2157816	2157817	rs112258894	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	17p13.3		rs112258894-T	0.35	2E-11		1.3		NR [NR] (imputed)	N
601	chr17	2167689	2167690	rs216175	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	17p13.3		rs216175-A	0.8278	3E-12		1.0432074	[1.031011352-1.055547705]	Affymetrix, Illumina [NR] (imputed)	N
601	chr17	2170215	2170216	rs170041	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17p13.3	SMG6	rs170041-T	0.2943	4E-17		0.0469	[0.036-0.058] unit decrease	Affymetrix [at least 7947838] (imputed)	N
601	chr17	2170500	2170501	rs72819571	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17p13.3	SMG6	rs72819571-G	0.652316	7E-16		0.0118643	[0.009-0.0147] unit increase	Affymetrix [12370749]	N
601	chr17	2170667	2170667	rs397857017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17p13.3		rs397857017-AT	NR	2E-11		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
601	chr17	2170667	2170667	rs397857017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17p13.3		rs397857017-AT	NR	2E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
601	chr17	2171636	2171637	rs17761864	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	17p13.3	SMG6	rs17761864-A	0.14	2E-11		1.21	[1.14-1.28]	NR [NR]	N
601	chr17	2172709	2172710	rs17834563	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p13.3	NR	rs17834563-C	0.346745	3E-20		0.0298148	[0.023-0.036] unit decrease	NR [19129689] (imputed)	N
601	chr17	2172752	2172753	rs216181	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs216181-?	NR	1E-25		0.0601311	[0.049-0.072] unit increase	Affymetrix [20259828] (imputed)	N
601	chr17	2177483	2177484	rs9898390	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.3		rs9898390-?	NR	4E-98		0.0471822	[0.043-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
601	chr17	2180306	2180307	rs188043700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	SMG6	rs188043700-G	NR	6E-10		0.0688471	[0.047-0.091] unit increase	Affymetrix [321016] (imputed)	N
601	chr17	2181498	2181499	rs36078137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17p13.3		rs36078137-C	NR	1E-18		0.0223	[0.017-0.027] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
601	chr17	2181657	2181658	rs4790323	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p13.3	NR	rs4790323-A	0.2788	1E-8		0.0362	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
601	chr17	2188638	2188639	rs216191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p13.3	SMG6	rs216191-T	0.6474	3E-22		0.03702377	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
601	chr17	2190385	2190386	rs112111542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.3	SMG6	rs112111542-C	0.09763	7E-29		0.04164492	[0.034-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr17	2191959	2191960	rs432200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.3	SMG6	rs432200-G	0.650035	3E-50		0.035499066	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
601	chr17	2191959	2191960	rs432200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.3	NR	rs432200-G	0.64947	4E-67		0.033108	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
601	chr17	2194873	2194874	rs12941836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17p13.3		rs12941836-G	NR	5E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
601	chr17	2196149	2196150	rs216205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p13.3	SMG6	rs216205-C	NR	2E-13		0.0247647	[0.018-0.031] unit decrease	Affymetrix [321788] (imputed)	N
601	chr17	2196149	2196150	rs216205	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	17p13.3	SMG6	rs216205-T	0.74	2E-8		1.24	[1.15-1.33]	Affymetrix, Illumina [~ 4800000] (imputed)	N
601	chr17	2200870	2200871	rs216199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17p13.3		rs216199-?	NR	2E-9				NR [~ 8900000] (imputed)	N
601	chr17	2201943	2201944	rs216197	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	17p13.3	SMG6	rs216197-A	NR	3E-12		0.0526	unit decrease	Illumina [15409056] (imputed)	N
601	chr17	2203166	2203167	rs216195	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	17p13.3	SMG6	rs216195-G	0.29	2E-9		0.0076	[0.0017-0.0135] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
601	chr17	2203166	2203167	rs216195	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.3	SMG6	rs216195-T	0.6964	2E-9		0.088	[0.058-0.118] unit decrease	Affymetrix [~ 11900000] (imputed)	N
601	chr17	2208898	2208899	rs4523957	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	17p13.3	NR	rs4523957-?	NR	3E-9				Illumina [up to 5582932] (imputed)	N
601	chr17	2208898	2208899	rs4523957	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p13.3	SRR	rs4523957-T	NR	4E-9		1.063	[1.04-1.08]	Illumina [6627481] (imputed)	N
601	chr17	2208898	2208899	rs4523957	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p13.3	SRR	rs4523957-T	NR	1E-9	(EA)	1.0722	[1.05-1.09]	Illumina [6627481] (imputed)	N
601	chr17	2208898	2208899	rs4523957	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	17p13.3	LOC101927839, SGSM2, SMG6, SNORD91A, SNORD91B, SRR, TSR1	rs4523957-T		7E-10		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
601	chr17	2208898	2208899	rs4523957	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p13.3	NR	rs4523957-T	NR	1E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
601	chr17	2208898	2208899	rs4523957	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	17p13.3	SGSM2, SMG6, SRR, TSR1	rs4523957-T	0.627	3E-10		1.071	[1.049-1.094]	Affymetrix, Illumina [9005918] (imputed)	N
601	chr17	2208898	2208899	rs4523957	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	17p13.3	intergenic	rs4523957-T	0.616	6E-8		1.083	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
601	chr17	2209887	2209888	rs4548913	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17p13.3	NR	rs4548913-A	0.632	7E-8		0.00747532	[0.0048-0.0102] unit decrease	NR [~ 9732723] (imputed)	N
601	chr17	2209887	2209888	rs4548913	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	17p13.3	NR	rs4548913-A	0.632	3E-8		0.008359953	[0.0054-0.0113] unit decrease	NR [~ 10000000] (imputed)	N
601	chr17	2216257	2216258	rs391300	20174558	Tsai FJ	2010-02-19	PLoS Genet	A genome-wide association study identifies susceptibility variants for type 2 diabetes in Han Chinese.	Type 2 diabetes	995 Han Chinese ancestry cases, 894 Han Chinese ancestry controls	1,803 Han Chinese ancestry cases, 1,473 Han Chinese ancestry controls	17p13.3	SRR	rs391300-G	0.62	3E-9		1.28	[1.18-1.39]	Illumina [516737]	N
602	chr17	2237460	2237461	rs413016	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.3	TSR1	rs413016-T	0.2642	4E-16		0.0176	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
602	chr17	2241898	2241899	rs7218436	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p13.3		rs7218436-T	0.634	9E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
602	chr17	2243135	2243136	rs61576608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.3	NR	rs61576608-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
602	chr17	2243627	2243628	rs4790076	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17p13.3	NR	rs4790076-T	0.1742	2E-9		1.049	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
602	chr17	2247981	2247982	rs12451892	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	17p13.3	SGSM2	rs12451892-T	0.6206	6E-11		0.015933128	[0.011-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
602	chr17	2253467	2253468	rs35280661	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17p13.3	SGSM2	rs35280661-G	NR	2E-6		1.0464	NR	Affymetrix, Illumina [8278136] (imputed)	N
602	chr17	2255192	2255193	rs898750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.3		rs898750-?	NR	4E-9				NR [~ 8900000] (imputed)	N
602	chr17	2262610	2262611	rs4790332	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	17p13.3	SGSM2	rs4790332-?	NR	2E-10				NR [3144808] (imputed)	N
602	chr17	2262702	2262703	rs4790333	21873549	Strawbridge RJ	2011-08-26	Diabetes	Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.	Proinsulin levels	10,701 European ancestry individuals	16,378 European ancestry individuals	17p13.3	SGSM2	rs4790333-T	0.45	3E-9				Affymetrix, Illumina [~ 2500000] (imputed)	N
602	chr17	2274336	2274337	rs725348	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17p13.3	SGSM2	rs725348-T	0.4315	4E-8		0.011117211	[0.0071-0.0151] unit decrease	Affymetrix [up to 18485882] (imputed)	N
602	chr17	2277719	2277720	rs2447098	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	17p13.3	NR	rs2447098-?		7E-12		0.014947	[0.011-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
602	chr17	2278063	2278064	rs2447097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p13.3		rs2447097-T	0.4596	1E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
602	chr17	2278063	2278064	rs2447097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.3	Intergenic	rs2447097-T	0.4596	6E-13	(MTAG)	0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
602	chr17	2278063	2278064	rs2447097	26398136	Kuo PH	2015-09-23	PLoS One	Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.	Autism spectrum disorder	315 Han Chinese ancestry cases, 1,115 Han Chinese ancestry controls	282 Han Chinese ancestry cases, 480 Han Chinese ancestry controls	17p13.3	MNT	rs2447097-A	0.261	9E-6		1.53	[1.27-1.85]	Affymetrix [546171]	N
602	chr17	2282778	2282779	rs61741902	23263489	Huyghe JR	2012-12-23	Nat Genet	Exome array analysis identifies new loci and low-frequency variants influencing insulin processing and secretion.	Fasting blood proinsulin levels	up to 8,229 Finnish ancestry non-diabetic individuals	NA	17p13.3	SGSM2	rs61741902-A	0.014	9E-10		0.126	[0.085-0.167] unit increase	Illumina [242071]	N
602	chr17	2294047	2294048	rs2447094	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17p13.3	NR	rs2447094-C	0.5313	3E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
602	chr17	2296013	2296014	rs2447091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p13.3	Intergenic	rs2447091-T	0.6038	4E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
602	chr17	2296013	2296014	rs2447091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17p13.3	Intergenic	rs2447091-T	0.6038	1E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
602	chr17	2302386	2302387	rs1381247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17p13.3		rs1381247-?	NR	4E-8				NR [~ 8900000] (imputed)	N
602	chr17	2302386	2302387	rs1381247	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p13.3		rs1381247-T	0.6667	2E-11	(conditional-joint)	0.0101	[0.0072-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
602	chr17	2309129	2309130	rs57513571	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.3	MNT	rs57513571-T	0.2004	2E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
602	chr17	2309971	2309972	rs187370584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p13.3	METTL16	rs187370584-G	NR	9E-9		0.0710121	[0.047-0.095] unit increase	Affymetrix [321016] (imputed)	N
602	chr17	2309971	2309972	rs187370584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p13.3	NR	rs187370584-A	0.986727	2E-8		0.0662026	[0.042-0.091] unit increase	Affymetrix [16580851] (imputed)	N
602	chr17	2310610	2310611	rs62067054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.3	METTL16, AC006435.1	rs62067054-T	0.192871	2E-9		0.016909668	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
602	chr17	2310610	2310611	rs62067054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p13.3	NR	rs62067054-T	0.190763	2E-10		0.015325	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
602	chr17	2310610	2310611	rs62067054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p13.3		rs62067054-?	NR	7E-10				NR [~ 8900000] (imputed)	N
602	chr17	2313854	2313855	rs111687486	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	17p13.3		rs111687486-G	0.865424	6E-6		0.011955	[0.0045-0.0194] unit increase	Illumina [7666802] (imputed)	N
603	chr17	2394673	2394674	rs188032140	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	17p13.3		rs188032140-T	0.0204411	4E-8		0.0886717	[0.057-0.12] unit increase	Illumina [7980478] (imputed)	N
603	chr17	2400875	2400876	rs62068188	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17p13.3	NR	rs62068188-T	0.8339	1E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
603	chr17	2428507	2428508	rs9891572	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	HDL cholesterol	4,763 Northern Finnish founder individuals	NA	17p13.3	intergenic	rs9891572-A	0.16	2E-7		0.05	[0.048-0.051] mmol/l increase	Illumina [329091]	N
603	chr17	2463973	2463974	rs137861704	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17p13.3	RN7SL33P	rs137861704-A	0.9981	4E-7		0.7505	[0.46-1.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr17	2463973	2463974	rs137861704	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17p13.3	RN7SL33P	rs137861704-A	0.9981	4E-7		0.7505	[0.46-1.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
603	chr17	2477694	2477695	rs35110958	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17p13.3	NR	rs35110958-T	NR	8E-10		6.151	z score decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2518097	2518098	rs34761973	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	17p13.3	NR	rs34761973-C	0.218	4E-11		0.0151	[0.011-0.02] unit increase	Illumina [NR] (imputed)	N
604	chr17	2518097	2518098	rs34761973	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	17p13.3	NR	rs34761973-C	0.2253	7E-11		0.022145376	[0.015-0.029] unit decrease	Illumina [NR] (imputed)	N
604	chr17	2518097	2518098	rs34761973	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	17p13.3	NR	rs34761973-C	0.2198	8E-10		0.0163	[0.011-0.022] unit decrease	Illumina [NR] (imputed)	N
604	chr17	2537550	2537551	rs2439998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs2439998-C	0.976132	4E-10				Affymetrix, Illumina [17210439] (imputed)	N
604	chr17	2542253	2542254	rs140255439	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	17p13.3	PAFAH1B1	rs140255439-T	0.007	7E-7	(Other antidepressants [N07CA])	9.16		Illumina [16500000] (imputed)	N
604	chr17	2553151	2553152	rs11078288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.3	PAFAH1B1	rs11078288-G	0.9862329	3E-10		0.060732123	[0.042-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
604	chr17	2555569	2555570	rs9908283	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p13.3	NR	rs9908283-A	0.278144	1E-11		0.015016	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
604	chr17	2555591	2555592	rs7219015	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	17p13.3	PAFAH1B1	rs7219015-C	0.2107	1E-7		0.015217761	[0.0087-0.0217] unit decrease	NR [9417325] (imputed)	N
604	chr17	2555591	2555592	rs7219015	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 41)	19,670 European ancestry individuals	NA	17p13.3		rs7219015-?	NR	2E-8				NR [9705931] (imputed)	N
604	chr17	2555591	2555592	rs7219015	28194004	Deary V	2017-02-14	Mol Psychiatry	Genetic contributions to self-reported tiredness.	Self-reported tiredness	108,976 British ancestry individuals	NA	17p13.3	PAFAH1B1	rs7219015-?		7E-8				Affymetrix [~ 17300000] (imputed)	N
604	chr17	2558078	2558079	rs35722835	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	17p13.3	NR	rs35722835-A	0.261401149380381	7E-9		0.006050789	[0.004-0.0081] unit decrease	NR [NR]	N
604	chr17	2564266	2564267	rs7218235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p13.3		rs7218235-A	0.2135	2E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
604	chr17	2564266	2564267	rs7218235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.3	Intergenic	rs7218235-A	0.2135	3E-8	(MTAG)	0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr17	2564266	2564267	rs7218235	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	17p13.3	NR	rs7218235-A	0.2128	4E-11		0.015395784	[0.011-0.02] unit decrease	Illumina [NR] (imputed)	N
604	chr17	2564266	2564267	rs7218235	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	17p13.3	NR	rs7218235-A	0.2077	1E-11		0.0241	[0.017-0.031] unit increase	Illumina [NR] (imputed)	N
604	chr17	2564266	2564267	rs7218235	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	17p13.3	NR	rs7218235-A	0.214	6E-11		0.0176	[0.012-0.023] unit increase	Illumina [NR] (imputed)	N
604	chr17	2574820	2574821	rs12938775	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	17p13.3	PAFAH1B1	rs12938775-G	0.4563	2E-11		0.015708024	[0.01-0.021] unit increase	NR [9417325] (imputed)	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	2E-12				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	7E-12				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	6E-12				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	2E-12				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	5E-11				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	2E-12				NR [NR]	N
604	chr17	2574820	2574821	rs12938775	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	8E-9		5.766298	z score decrease	Affymetrix [NR] (imputed)	N
604	chr17	2574820	2574821	rs12938775	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	17p13.3	NR	rs12938775-G	0.4989	2E-9		0.0114	[0.0077-0.0151] unit increase	NR [8968716] (imputed)	N
604	chr17	2574820	2574821	rs12938775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17p13.3		rs12938775-?	NR	6E-11				NR [~ 8900000] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17p13.3	NR	rs12938775-A	NR	1E-11		6.755	z score decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17p13.3	NR	rs12938775-G	NR	2E-8		0.01288	[0.0084-0.0174] unit increase	Affymetrix [10847151] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.3	NR	rs12938775-?	NR	1E-6		0.0084126	[0.005-0.0118] unit increase	Affymetrix [805426] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17p13.3	PAFAH1B1	rs12938775-A	0.499686	8E-12		6.84	z score decrease	NR [10847151] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17p13.3	intergenic	rs12938775-A	0.49969	8E-11		6.494	z score decrease	Illumina [18485882] (imputed)	N
604	chr17	2574820	2574821	rs12938775	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17p13.3	NR	rs12938775-A	0.49969	1E-8		0.031696	[0.021-0.043] unit decrease	Illumina [18485882] (imputed)	N
604	chr17	2574820	2574821	rs12938775	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	17p13.3	PAFAH1B1	rs12938775-A	0.534	9E-9		0.020195153	[0.013-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
604	chr17	2578549	2578550	rs4790352	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17p13.3	NR	rs4790352-G	0.08119	9E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
604	chr17	2583975	2583976	rs4790355	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17p13.3	NR	rs4790355-T	NR	5E-9		5.832	z score decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2589487	2589488	rs35994060	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17p13.3	NR	rs35994060-A	NR	2E-8		5.624	z score decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2589487	2589488	rs35994060	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17p13.3	METTL16	rs35994060-A	0.387895	2E-11		6.69	z score decrease	NR [10847151] (imputed)	N
604	chr17	2591560	2591561	rs2013515	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17p13.3	NR	rs2013515-A	NR	1E-9		6.045	z score decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2591939	2591940	rs7212450	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.3		rs7212450-?	NR	1E-8				NR [~ 8900000] (imputed)	N
604	chr17	2591939	2591940	rs7212450	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17p13.3	NR	rs7212450-?	NR	4E-8		0.01306	[0.0084-0.0177] unit decrease	Affymetrix [10847151] (imputed)	N
604	chr17	2596179	2596180	rs111246591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs111246591-?	NR	3E-9				NR [~ 8900000] (imputed)	N
604	chr17	2600185	2600186	rs11078312	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.3	MIR6776	rs11078312-G	0.891479	7E-14		0.00273816	[0.002-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
604	chr17	2601265	2601266	rs145919520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17p13.3	CLUH	rs145919520-T	0.012918	2E-10		0.06586673	[0.046-0.086] unit increase	Affymetrix [93095623] (imputed)	N
604	chr17	2601265	2601266	rs145919520	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs145919520-C	0.987748	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
604	chr17	2601265	2601266	rs145919520	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17p13.3	NR	rs145919520-C	0.987354	7E-12		0.061767	[0.044-0.079] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
604	chr17	2601265	2601266	rs145919520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p13.3		rs145919520-?	NR	2E-10				NR [~ 8900000] (imputed)	N
605	chr17	2687690	2687691	rs113133947	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.3	NR	rs113133947-?	NR	1E-6		0.0082398	[0.0049-0.0116] unit increase	Affymetrix [805426] (imputed)	N
605	chr17	2688670	2688671	rs8070218	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RAP1GAP2	rs8070218-?	NR	1E-9	(male)	1.23386	[NR] unit decrease	Affymetrix [NR] (imputed)	N
605	chr17	2691792	2691793	rs9906052	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	17p13.3	NR	rs9906052-?	0.18	4E-6		1.67	[1.34-2.08]	Illumina [5934489] (imputed)	N
605	chr17	2695836	2695837	rs178575	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	17p13.3	RAP1GAP2	rs178575-A	NR	8E-7		6.3793964	[3.87-8.89] unit decrease	Illumina [> 6200000] (imputed)	N
605	chr17	2703098	2703099	rs57282053	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	17p13.3	NR	rs57282053-G	0.284	6E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
605	chr17	2714117	2714118	rs11657118	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs11657118-C	0.47486	4E-9		0.1428	[0.095-0.19] unit decrease	Illumina [18238287] (imputed)	N
605	chr17	2715960	2715961	rs11657759	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs11657759-C	0.49011	2E-8		0.1352	[0.088-0.182] unit decrease	Illumina [18238287] (imputed)	N
605	chr17	2716154	2716155	rs9892810	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T/B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs9892810-C	0.5970500000000001	2E-10		0.1572	[0.11-0.21] unit increase	Illumina [18427377] (imputed)	N
605	chr17	2716326	2716327	rs66777340	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs66777340-T	0.48391	8E-10		0.1493	[0.1-0.2] unit decrease	Illumina [18430820] (imputed)	N
605	chr17	2716534	2716535	rs11653761	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Switched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs11653761-T	0.59197	2E-9		0.1491	[0.1-0.2] unit decrease	Illumina [18238287] (imputed)	N
605	chr17	2716534	2716535	rs11653761	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs11653761-T	0.59197	3E-8		0.1359	[0.088-0.184] unit decrease	Illumina [18238287] (imputed)	N
605	chr17	2723867	2723868	rs62089694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs62089694-G	0.161428	2E-10		0.019146483	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
605	chr17	2729247	2729247	rs67968065	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p13.3	RAP1GAP2	rs67968065-?	0.52	2E-9		1.05	[1.04-1.06]	Illumina [at least 560000] (imputed)	N
605	chr17	2729247	2729247	rs67968065	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p13.3	RAP1GAP2	rs67968065-?	NR	2E-9		1.0515248	[1.03-1.07]	Illumina [13757430] (imputed)	N
605	chr17	2729651	2729652	rs6502555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17p13.3		rs6502555-T	0.732	4E-12				Affymetrix [10369434] (imputed)	N
605	chr17	2729651	2729652	rs6502555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17p13.3		rs6502555-T	0.732	1E-9				Affymetrix [10369434] (imputed)	N
605	chr17	2729651	2729652	rs6502555	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17p13.3		rs6502555-T	0.732	1E-15				Affymetrix [10369434] (imputed)	N
605	chr17	2729651	2729652	rs6502555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs6502555-C	0.268669	3E-31		0.029350929	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
605	chr17	2729651	2729652	rs6502555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs6502555-C	0.293622	1E-37				Affymetrix, Illumina [23472807] (imputed)	N
605	chr17	2729651	2729652	rs6502555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17p13.3	NR	rs6502555-C	0.269464	9E-38		0.028939	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
605	chr17	2729651	2729652	rs6502555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p13.3	RAP1GAP2	rs6502555-C	0.2706	2E-17		0.03525269	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
605	chr17	2729979	2729980	rs9674744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs9674744-T	0.276667	7E-11		0.016245367	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr17	2730029	2730030	rs9674692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs9674692-T	0.276563	7E-15		0.019396966	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
605	chr17	2731369	2731370	rs11657531	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell %Lymphocyte	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.3		rs11657531-T	0.48823	6E-10		0.1468	[0.1-0.19] unit decrease	Illumina [18238316] (imputed)	N
606	chr17	2771511	2771512	rs12603284	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17p13.3	GARNL4	rs12603284-?	0.08	3E-6	(Recessive)	1.89	[1.45-2.47]	Affymetrix [319222]	N
606	chr17	2775741	2775742	rs4287603	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	17p13.3	RAP1GAP2	rs4287603-A	0.372	6E-17		0.2	[0.15-0.25] unit increase	Affymetrix [339439]	N
606	chr17	2785894	2785895	rs59403466	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17p13.3	RAP1GAP2	rs59403466-?	NR	6E-7				Affymetrix [5486770] (imputed)	N
606	chr17	2815005	2815006	rs12951352	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	17p13.3	NR	rs12951352-?		9E-6		2.08	[1.50-2.88]	Illumina [539473] (imputed)	N
606	chr17	2827957	2827958	rs9902403	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	17p13.3	RAP1GAP2	rs9902403-?	NR	9E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
606	chr17	2852631	2852632	rs4790395	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	17p13.3		rs4790395-T	NR	4E-8		6.4971	[4.26-8.73] unit decrease	Illumina [NR] (imputed)	N
606	chr17	2863151	2863152	rs9901627	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p13.3	NR	rs9901627-G	0.335373	4E-9		0.0193262	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
606	chr17	2865007	2865008	rs12150253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs12150253-G	0.249905	5E-9		0.015089517	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr17	2865788	2865789	rs34224666	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs34224666-C	0.244376	8E-12				Affymetrix, Illumina [19872809] (imputed)	N
606	chr17	2865788	2865789	rs34224666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.3		rs34224666-?	NR	5E-14				NR [~ 8900000] (imputed)	N
606	chr17	2868934	2868935	rs12950923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs12950923-C	0.831806	2E-10		0.019346384	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
606	chr17	2881624	2881625	rs62091998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs62091998-G	0.307658	1E-10		0.015530273	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr17	2881624	2881625	rs62091998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17p13.3	NR	rs62091998-G	0.307536	4E-13		0.01559	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
606	chr17	2882004	2882005	rs62092000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs62092000-A	0.309362	6E-12		0.016363928	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr17	2882004	2882005	rs62092000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs62092000-A	0.309352	4E-11		0.015831647	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr17	2882004	2882005	rs62092000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.3	NR	rs62092000-A	0.323765	5E-13				Affymetrix, Illumina [23467995] (imputed)	N
606	chr17	2882004	2882005	rs62092000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17p13.3	NR	rs62092000-A	0.309007	4E-14		0.015276	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
606	chr17	2882004	2882005	rs62092000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.3		rs62092000-?	NR	1E-9				NR [~ 8900000] (imputed)	N
606	chr17	2883319	2883320	rs7503461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17p13.3		rs7503461-T	NR	2E-8		0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
606	chr17	2883319	2883320	rs7503461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17p13.3		rs7503461-C	0.682	8E-14				Affymetrix [10369434] (imputed)	N
606	chr17	2883319	2883320	rs7503461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs7503461-T	0.318466	2E-12		0.016639836	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
606	chr17	2883319	2883320	rs7503461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs7503461-T	0.318569	8E-10		0.014645437	[0.01-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr17	2883319	2883320	rs7503461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	17p13.3	NR	rs7503461-T	0.318513	1E-9		0.01342	[0.0091-0.0177] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
607	chr17	2883587	2883588	rs17762452	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	17p13.3		rs17762452-?	NR	5E-8				Affymetrix [NR] (imputed)	N
607	chr17	2883587	2883588	rs17762452	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17p13.3		rs17762452-?	NR	5E-8				Affymetrix [NR] (imputed)	N
607	chr17	2883587	2883588	rs17762452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs17762452-A	0.318388	2E-10		0.015015028	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr17	2883587	2883588	rs17762452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.3	RAP1GAP2	rs17762452-A	0.318367	6E-24		0.024031077	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr17	2883587	2883588	rs17762452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p13.3	RAP1GAP2	rs17762452-A	0.3188	8E-14		0.02877507	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
607	chr17	2886090	2886091	rs17822257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.3		rs17822257-?	NR	8E-11				NR [~ 8900000] (imputed)	N
607	chr17	2904291	2904292	rs12938141	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	17p13.3	NR	rs12938141-?	NR	5E-7		0.77756035	[0.70-0.86]	Affymetrix, Illumina [~ 10400000] (imputed)	N
607	chr17	2938532	2938533	rs9895098	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	17p13.3	RAP1GAP2	rs9895098-C	0.10	3E-7	(Latino, female)	2.31	[1.90-2.80]	Affymetrix, Illumina [~ 2100000] (imputed)	N
607	chr17	2948457	2948458	rs112864817	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17p13.3	RAP1GAP2, OR1D5	rs112864817-T	0.980752	7E-11	(p-cresol-glucuronide*)	0.445	[0.31-0.58] unit decrease	Illumina [13039987] (imputed)	N
607	chr17	2948457	2948458	rs112864817	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	17p13.3	RAP1GAP2, OR1D5	rs112864817-T	0.980752	7E-11	(p-cresol-glucuronide*)	0.445	[0.31-0.58] unit decrease	Illumina [13039987] (imputed)	N
607	chr17	3000520	3000521	rs72808831	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		OR1D2	rs72808831-?	NR	4E-10	(female)	2.43843	[NR] unit increase	Affymetrix [NR] (imputed)	N
608	chr17	3029553	3029554	rs12449465	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	17p13.3	OR1D2, OR1G1	rs12449465-G	0.125	1E-6		1.26	[NR]	Illumina [580699]	N
608	chr17	3035169	3035170	rs9915201	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.3	OR1D2	rs9915201-?	NR	9E-7	(F1P; F6P; G1P; G6P)	0.3852093	[0.23-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
608	chr17	3098633	3098634	rs11868164	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	17p13.3	NR	rs11868164-?		3E-6				Illumina [892589]	N
609	chr17	3159789	3159790	rs59125474	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	17p13.3	intergenic	rs59125474-A	NR	2E-6	(adjusted for clinical variables)			Illumina [up to 3803121] (imputed)	N
609	chr17	3179710	3179711	rs2955821	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p13.3	NR	rs2955821-?	NR	4E-12				Affymetrix [NR]	N
609	chr17	3188011	3188012	rs2005290	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	17p13.3	OR3A1, OR3A2	rs2005290-?	NR	4E-7				Illumina [37426733] (imputed)	N
609	chr17	3188011	3188012	rs2005290	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	17p13.3	OR3A1, OR3A2	rs2005290-?	NR	2E-6	(EA)			Illumina [37426733] (imputed)	N
610	chr17	3295367	3295368	rs162253	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.3	NR	rs162253-?		2E-6				Illumina [4322238] (imputed)	N
610	chr17	3331922	3331923	rs67284195	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	17p13.2	NR	rs67284195-?	NR	2E-14				Affymetrix, Illumina [6210360] (imputed)	N
610	chr17	3340782	3340783	rs227801	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	17p13.2		rs227801-T	0.0390802	9E-6		0.0248015	[0.011-0.038] unit increase	Illumina [7666802] (imputed)	N
610	chr17	3378875	3378876	rs3829957	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	17p13.2	NR	rs3829957-T	0.1974	3E-15		0.3796	[0.29-0.47] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
610	chr17	3393067	3393068	rs923375	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17p13.2	ASPA	rs923375-?	0.188	4E-16			[NR]	Affymetrix, Illumina [152234]	N
611	chr17	3417652	3417653	rs2318097	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	17p13.2	NR	rs2318097-?	NR	5E-6		3.28	[2.59-4.16]	Illumina [539000] (imputed)	N
612	chr17	3556470	3556471	rs188118937	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p13.2	CTNS	rs188118937-T	0.0139091516842047	9E-6	(G_unclassified_P_Firmicutes_HB)	1.17896	[0.66-1.7] unit decrease	Illumina [7711310] (imputed)	N
612	chr17	3606116	3606117	rs117672332	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		HASPIN	rs117672332-T	0.989	2E-15		7.6928	[4.7648-12.5073}	Illumina [1465938] (imputed)	N
612	chr17	3627455	3627456	rs11653889	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	17p13.2	HASPIN	rs11653889-A	0.0072	1E-14		0.0499	NR	Illumina [1465938] (imputed)	N
612	chr17	3664974	3664975	rs220470	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	17p13.2	ITGAE	rs220470-?	NR	1E-7				Affymetrix [504219]	N
613	chr17	3708033	3708034	rs7503464	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-herpes simplex virus 2 IgG seropositivity	8,735 White British ancestry individuals	NA	17p13.2	CTD, 3195I5.5	rs7503464-G	0.484	1E-8		0.03	[0.019-0.041] unit increase	NR [25472218] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17p13.2	NR	rs9907361-T	NR	7E-6				NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	17p13.2	NR	rs9907361-T	NR	7E-6				NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17p13.2	NCBP3	rs9907361-T	0.2069	7E-7		0.1741	[0.11-0.24] unit decrease	NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	17p13.2	NCBP3	rs9907361-T	0.2069	7E-7		0.1741	[0.11-0.24] unit decrease	NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	17p13.2	NCBP3	rs9907361-T	0.2069	2E-6	(female)	0.1174	[0.069-0.166] unit decrease	NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 3,833 European ancestry recurrent major depressive disorder female cases, 1,481 recurrent major depressive disorder male cases, 38,937 European ancestry female controls, 29,714 European ancestry male controls	NA	17p13.2	NR	rs9907361-T	0.2069	2E-6	(female)	0.1174	[0.069-0.166] unit decrease	NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17p13.2	NCBP3	rs9907361-T	0.2066	1E-6		0.1588	[0.095-0.223] unit decrease	NR [NR] (imputed)	N
613	chr17	3723336	3723337	rs9907361	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	17p13.2	NCBP3	rs9907361-T	NR	1E-6		0.1588	[0.095-0.223] unit decrease	NR [NR] (imputed)	N
613	chr17	3745627	3745628	rs62070431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.2	C17orf85	rs62070431-G	0.215744	4E-9		0.016170707	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr17	3785617	3785618	rs74582253	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	17p13.2		rs74582253-?	NR	2E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
613	chr17	3786906	3786907	rs758642	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	17p13.2	CAMKK1	rs758642-?	0.34	7E-6	(CPD)	0.08	[NR] cigarettes per day increase	Illumina [~ 518000]	N
613	chr17	3787474	3787475	rs3809804	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	17p13.2	P2RX1	rs3809804-?	NR	1E-6	(EA)			Illumina [126270]	N
614	chr17	3814428	3814429	rs35154409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.2	P2RX1	rs35154409-T	0.206215	5E-9		0.016690793	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr17	3814428	3814429	rs35154409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs35154409-T	0.211505	4E-13				Affymetrix, Illumina [24588908] (imputed)	N
614	chr17	3814608	3814608	rs71144146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p13.2		rs71144146-TTTTC	NR	1E-9		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
614	chr17	3815919	3815920	rs1985205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.2	P2RX1	rs1985205-T	0.239862	8E-13		0.018929569	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr17	3815919	3815920	rs1985205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.2	NR	rs1985205-T	0.240318	3E-15		0.017889	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
614	chr17	3818619	3818620	rs10852862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	P2RX1	rs10852862-C	0.619247	3E-10		0.014531816	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
614	chr17	3818829	3818830	rs2325788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs2325788-A	0.373808	7E-13				Affymetrix, Illumina [17210439] (imputed)	N
614	chr17	3818829	3818830	rs2325788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p13.2	NR	rs2325788-A	0.379967	2E-14		0.015123	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
614	chr17	3821297	3821298	rs7501731	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	17p13.2	intergenic	rs7501731-?	NR	9E-6		0.38	[0.21-0.55] unit increase	Illumina [at least 13000000] (imputed)	N
614	chr17	3828085	3828086	rs1043246	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17p13.2	ZZEF1	rs1043246-G	0.1568	8E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
614	chr17	3828701	3828702	rs887387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.2		rs887387-?	NR	4E-12				NR [~ 8900000] (imputed)	N
614	chr17	3839873	3839874	rs35334668	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	17p13.2		rs35334668-G	NR	5E-6		1.2989		Illumina [up to 7574753] (imputed)	N
614	chr17	3844670	3844671	rs55858476	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	17p13.2	ATP2A3	rs55858476-A	0.206529	5E-6		0.76	[0.676 - 0.855]	Illumina [5397657] (imputed)	N
614	chr17	3860355	3860356	rs3826482	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17p13.2	ZZEF1	rs3826482-A	0.5756	2E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
614	chr17	3865398	3865399	rs1006703	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	17p13.2	ATP2A3	rs1006703-?	NR	3E-6	(AIRg)	2.13	[1.01-3.25] unit increase	Illumina [693128]	N
614	chr17	3880147	3880148	rs7215084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p13.2		rs7215084-?	NR	1E-27				NR [~ 8900000] (imputed)	N
614	chr17	3880227	3880228	rs16942523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.2	Intergenic	rs16942523-T	0.1448	5E-8	(MTAG)	0.0102	[0.0065-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
614	chr17	3881292	3881293	rs12453576	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17p13.2	RP11-459C13.1	rs12453576-T	0.177701	7E-11		0.051418267	[0.036-0.067] unit increase	Affymetrix [7288503] (imputed)	N
614	chr17	3882612	3882613	rs8082036	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17p13.2	ATP2A3	rs8082036-C	0.5123	2E-8		0.0142	[0.0093-0.0191] unit increase	Affymetrix [19819130] (imputed)	N
614	chr17	3882612	3882613	rs8082036	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.2	ATP2A3	rs8082036-C	0.5123	7E-24		0.0238	[0.019-0.029] unit increase	Affymetrix [19819130] (imputed)	N
614	chr17	3884025	3884026	rs12449758	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p13.2	ATP2A3	rs12449758-A	0.68727	2E-9		0.0127472	[0.0086-0.0169] unit increase	Affymetrix [NR] (imputed)	N
614	chr17	3888436	3888437	rs67833703	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.2	ATP2A3, ZZEF1	rs67833703-C		1E-8		0.147	unit decrease	Affymetrix [at least 2696785] (imputed)	N
614	chr17	3902649	3902650	rs8081417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.2		rs8081417-?	NR	9E-8				NR [~ 8900000] (imputed)	N
615	chr17	3940178	3940179	rs34453556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p13.2	Intergenic	rs34453556-A	0.0249	5E-8	(MTAG)	0.0291	[0.019-0.039] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
615	chr17	3943542	3943543	rs2176324	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.2	ATP2A3	rs2176324-?	NR	3E-6	(asymmetric dimethylarginine)	0.20159674	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
615	chr17	3946226	3946227	rs781832	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17p13.2	NR	rs781832-T		5E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
615	chr17	3947643	3947644	rs781831	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	17p13.2	ZZEF1	rs781831-C	0.422	2E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
615	chr17	3947643	3947644	rs781831	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	17p13.2	ZZEF1	rs781831-C	0.422	8E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [247470]	N
615	chr17	3950223	3950224	rs781856	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	17p13.2	ZZEF1	rs781856-?		7E-6	(MCRI)	0.94	[0.45-1.43] unit increase	Illumina [693128]	N
615	chr17	3951945	3951946	rs9895032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.2	ZZEF1	rs9895032-T	0.500154	4E-12		0.015603812	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
615	chr17	3953101	3953102	rs781852	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	17p13.2	ZZEF1	rs781852-G	0.387	8E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
615	chr17	3953101	3953102	rs781852	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	17p13.2	ZZEF1	rs781852-G	0.387	9E-11		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
615	chr17	3954730	3954731	rs117810464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.2		rs117810464-?	NR	3E-10				NR [~ 8900000] (imputed)	N
615	chr17	3966590	3966591	rs9896963	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17p13.2	NR	rs9896963-C	0.18	1E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix [2446094] (imputed)	N
615	chr17	3966590	3966591	rs9896963	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17p13.2	NR	rs9896963-C	0.18	5E-8				Affymetrix [2446094] (imputed)	N
615	chr17	3969526	3969527	rs9892466	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17p13.2	ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1	rs9892466-?		6E-14				Affymetrix, Illumina [NR] (imputed)	N
615	chr17	3978530	3978531	rs34356467	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.2	NR	rs34356467-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
615	chr17	3981065	3981066	rs8070737	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.2	ZZEF1	rs8070737-G	0.817519	5E-9		0.0139172	[0.0092-0.0186] unit decrease	NR [13737936] (imputed)	N
615	chr17	3981065	3981066	rs8070737	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17p13.2	NA	rs8070737-T	0.1682	7E-12		0.016	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
615	chr17	3981147	3981148	rs8074454	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17p13.2		rs8074454-C	0.33	6E-7		0.01	nmol/L decrease	NR [NR] (imputed)	N
615	chr17	3981147	3981148	rs8074454	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17p13.2		rs8074454-C	0.33	6E-12				NR [NR] (imputed)	N
615	chr17	3981147	3981148	rs8074454	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	17p13.2		rs8074454-C	0.33	4E-8		0.011	mmol/L decrease	NR [NR] (imputed)	N
615	chr17	3981147	3981148	rs8074454	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17p13.2		rs8074454-C	0.33	3E-11		0.011	% increase	NR [NR] (imputed)	N
615	chr17	3981147	3981148	rs8074454	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17p13.2	NR	rs8074454-C	0.3279	4E-11		0.017448273	[0.012-0.023] unit increase	Affymetrix [10549349] (imputed)	N
615	chr17	3985122	3985122	rs752131371	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.2		rs752131371-?	NR	1E-9		0.0156946	[0.01-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
615	chr17	3985426	3985427	rs12452393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.2		rs12452393-?	NR	4E-8				NR [~ 8900000] (imputed)	N
615	chr17	3985863	3985864	rs8068804	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17p13.2	ZZEF1	rs8068804-A	0.325096537247602	4E-14		0.0587	[0.043-0.074] unit increase	NR [5035015] (imputed)	N
615	chr17	3988450	3988451	rs8071043	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p13.2	NR	rs8071043-C	0.3284	5E-28		0.0541	[0.044-0.064] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
615	chr17	3988450	3988451	rs8071043	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.2	NR	rs8071043-C	0.3318	5E-30		0.0465	[0.038-0.055] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
615	chr17	4001554	4001556	rs61342066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p13.2		rs61342066-C	NR	5E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
615	chr17	4005520	4005521	rs747360	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	17p13.2		rs747360-A	0.134831263	1E-8		1.0701156	[1.045316033-1.095503414]	Illumina [8919992] (imputed)	N
615	chr17	4007593	4007594	rs7221595	24039173	McGrath LM	2013-09-13	Am J Med Genet B Neuropsychiatr Genet	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NA	17p13.2	ZZEF1, CYB5D2, ANKFY1	rs7221595-?	NR	5E-6	(PCS)			Affymetrix [1633452] (imputed)	N
615	chr17	4014383	4014384	rs7224685	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	17p13.2	ZZEF1	rs7224685-T	0.3	3E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
615	chr17	4015996	4015997	rs58625333	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	17p13.2	ZZEF1	rs58625333-A	0.7549	2E-7	(male)	0.096	[0.06-0.132] unit decrease	NR [NR] (imputed)	N
615	chr17	4024823	4024824	rs113547729	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	17p13.2	NR	rs113547729-G	0.8815	9E-9		0.0819	[0.054-0.11] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
615	chr17	4024823	4024824	rs113547729	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	17p13.2	ZZEF1	rs113547729-A	0.12	8E-9		1.09	1.06-1.12	Illumina [12557761] (imputed)	N
615	chr17	4031456	4031457	rs67572826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p13.2		rs67572826-G	NR	5E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
615	chr17	4032784	4032785	rs12453376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17p13.2		rs12453376-G	NR	2E-14		0.0581	[0.043-0.073] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
615	chr17	4045439	4045440	rs1377807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17p13.2		rs1377807-C	NR	3E-10		0.0532	[0.037-0.07] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
615	chr17	4045439	4045440	rs1377807	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17p13.2	ZZEF1	rs1377807-C	0.3118	4E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
615	chr17	4050137	4050138	rs7219437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p13.2		rs7219437-T	NR	8E-9		0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
615	chr17	4057526	4057527	rs8078296	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs8078296-T	0.0630651	6E-11				Affymetrix, Illumina [24558453] (imputed)	N
616	chr17	4063733	4063734	rs12940450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17p13.2		rs12940450-G	NR	9E-10		0.048	[0.033-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
616	chr17	4072760	4072761	rs77246175	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CYB5D2	5,358 Icelandic ancestry individuals	NA	17p13.2		rs77246175-C	0.07567	3E-21		0.32743	[0.26-0.4] unit increase	Illumina [7506463] (imputed)	N
616	chr17	4072760	4072761	rs77246175	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.2	CYB5D2	rs77246175-G	0.92140625	2E-13	(CYB5D2, 10924_258_3)	0.3418319	[0.25-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
616	chr17	4081974	4081975	rs2278524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	17p13.2		rs2278524-?	NR	2E-8				NR [~ 8900000] (imputed)	N
616	chr17	4083922	4083923	rs12943517	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.2	ANKFY1	rs12943517-A	0.3937	3E-11		0.1865	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
616	chr17	4095740	4095741	rs3931099	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	17p13.2	ANKFY1	rs3931099-T	0.3694	7E-6		0.1093	[0.062-0.157] unit decrease	NR [NR] (imputed)	N
616	chr17	4095740	4095741	rs3931099	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	17p13.2	NR	rs3931099-T	0.3694	3E-6	(male)	0.0731	[0.042-0.104] unit increase	NR [NR] (imputed)	N
616	chr17	4103050	4103051	rs62064368	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	17p13.2	NR	rs62064368-?	NR	2E-7			[NR]	Illumina [5779266] (imputed)	N
616	chr17	4151602	4151603	rs74498987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p13.2	ANKFY1	rs74498987-A	0.071956	1E-9		0.025962701	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr17	4151602	4151603	rs74498987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p13.2	NR	rs74498987-A	0.073585	2E-11		0.023809	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
616	chr17	4177495	4177495	rs11426758	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	17p13.2		rs11426758-?	NR	7E-6	(mucinous_all)	1.56		Illumina [11595112] (imputed)	N
616	chr17	4181635	4181636	rs55637058	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17p13.2	UBE2G1	rs55637058-A	0.568	5E-6		0.2677	[0.15-0.38] unit increase	NR [NR] (imputed)	N
616	chr17	4182723	4182724	rs11078493	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	17p13.2	NR	rs11078493-A	0.683	6E-6	(male)	0.0767	[0.044-0.11] unit decrease	NR [NR] (imputed)	N
616	chr17	4185623	4185624	rs9893691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p13.2		rs9893691-?	NR	2E-8				NR [~ 8900000] (imputed)	N
617	chr17	4194645	4194646	rs35451246	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	17p13.2	UBE2G1	rs35451246-T	0.6911	2E-6	(male)	0.0826	[0.048-0.117] unit decrease	NR [NR] (imputed)	N
617	chr17	4224638	4224639	rs66679234	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	17p13.2		rs66679234-T	0.42871	2E-8		0.1391	[0.09-0.188] unit decrease	Illumina [18349913] (imputed)	N
617	chr17	4242275	4242276	rs75116832	28439531	Aslibekyan S	2017-03-08	J Nutr Intermed Metab	Genome- and CD4+ T-cell methylome-wide association study of circulating trimethylamine-N-oxide in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Plasma trimethylamine N-oxide levels	626 European ancestry individuals	NA	17p13.2	UBE2G1	rs75116832-?	NR	9E-8		1.82	[1.15-2.49] uM decrease	Affymetrix [9432837] (imputed)	N
617	chr17	4278870	4278871	rs34615715	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p13.2	NR	rs34615715-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
617	chr17	4285388	4285389	rs116924511	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CYB5D2	5,358 Icelandic ancestry individuals	NA	17p13.2		rs116924511-T	0.02953	2E-11		0.359594	[0.25-0.46] unit decrease	Illumina [7506463] (imputed)	N
617	chr17	4298552	4298553	rs9894290	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p13.2	UBE2G1	rs9894290-A	0.176910485848559	9E-7	(G_Subdoligranulum_HB)	0.399885	[0.24-0.56] unit decrease	Illumina [7711310] (imputed)	N
617	chr17	4317910	4317911	rs184015392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.2	NR	rs184015392-C	0.01045	3E-8	(PCCB)	0.446	NR unit increase	Illumina [1671387] (imputed)	N
618	chr17	4327982	4327983	rs140394255	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	17p13.2	UBE2G1, SPNS3	rs140394255-A	0.075061735	2E-6		1.3050312	[1.168823371-1.457111962]	Illumina [10439017] (imputed)	N
618	chr17	4328164	4328165	rs34319244	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	17p13.2	SPNS3	rs34319244-C	0.44	3E-6	(EA)	1.51	[NR]	Illumina [6728637] (imputed)	N
618	chr17	4328311	4328312	rs138615762	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17p13.2	Intergenic	rs138615762-T	0.01	3E-6		0.076	unit decrease	Illumina [NR] (imputed)	N
618	chr17	4374737	4374738	rs55959226	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	17p13.2	NR	rs55959226-?	NR	6E-6		0.1602	[0.089-0.231] unit increase	Illumina [at least 560000] (imputed)	N
618	chr17	4393497	4393498	rs333119	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p13.2	SPNS3	rs333119-A	0.0070	6E-6	(MCP1 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
618	chr17	4396109	4396110	rs333116	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.2		rs333116-G	0.48	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
618	chr17	4399285	4399286	rs333114	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	17p13.2	AC118754.4	rs333114-?	NR	2E-6		3.22	[1.72-6.05]	Illumina [654642] (imputed)	N
618	chr17	4430957	4430958	rs34956586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.2		rs34956586-?	NR	7E-9				NR [~ 8900000] (imputed)	N
619	chr17	4494740	4494741	rs148845971	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17p13.2	NR	rs148845971-?	NR	2E-9				Illumina [7760689] (imputed)	N
619	chr17	4503194	4503195	rs12601925	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	17p13.2	SMTNL2, GGT6	rs12601925-G	0.86	6E-9		2.15	[1.66-2.78]	Illumina [7000653] (imputed)	N
619	chr17	4503194	4503195	rs12601925	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	17p13.2	SMTNL2, GGT6	rs12601925-G	0.86	7E-7		1.79	[1.42-2.26]	Illumina [7000653] (imputed)	N
619	chr17	4515265	4515266	rs567339168	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs567339168-G	NR	7E-10	(Total_SM)	0.6024	[0.41-0.79] unit decrease	Illumina [~ 9300000] (imputed)	N
619	chr17	4519138	4519139	rs9895232	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	17p13.2	SMTNL2, ALOX15	rs9895232-C	0.35	3E-6		1.62	[1.32-1.99]	Illumina [~ 10500000] (imputed)	N
619	chr17	4521472	4521473	rs71368508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17p13.2		rs71368508-A	NR	6E-81		0.1176	[0.11-0.13] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
619	chr17	4521472	4521473	rs71368508	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17p13.2	SMTNL2/ALOX15	rs71368508-C	0.979488	7E-10		1.1407447	1.09402023022414-1.18946471518921]	NR [9572556] (imputed)	N
619	chr17	4521472	4521473	rs71368508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.2		rs71368508-?	NR	6E-140				NR [~ 8900000] (imputed)	N
619	chr17	4521472	4521473	rs71368508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17p13.2		rs71368508-?	NR	6E-13				NR [~ 8900000] (imputed)	N
619	chr17	4521472	4521473	rs71368508	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17p13.2	SMTNL2, ALOX15	rs71368508-C	0.99	2E-9		1.124	[1.09-1.16]	Affymetrix, Illumina [8307659] (imputed)	N
619	chr17	4522240	4522241	rs149206763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17p13.2	RP11-141J13.5, RNU6-955P	rs149206763-A	0.146	1E-13		0.03793344	[0.028-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4522240	4522241	rs149206763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17p13.2	RP11-141J13.5, RNU6-955P	rs149206763-A	0.146	4E-17		0.04318702	[0.033-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4522240	4522241	rs149206763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17p13.2	RP11-141J13.5, RNU6-955P	rs149206763-A	0.146	1E-20		0.04759278	[0.038-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4522240	4522241	rs149206763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17p13.2	RP11-141J13.5, RNU6-955P	rs149206763-A	0.1461	9E-20		0.04667718	[0.037-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4522240	4522241	rs149206763	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17p13.2	RP11-141J13.5, RNU6-955P	rs149206763-A	0.146	1E-15		0.04103604	[0.031-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4531881	4531882	rs17764723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.2	ALOX15	rs17764723-C	0.160053	1E-15		0.027992208	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4531881	4531882	rs17764723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.2	ALOX15	rs17764723-C	0.160047	2E-39		0.039899673	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4532938	4532939	rs12150045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.2	ALOX15	rs12150045-T	0.221629	4E-9		0.016678011	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
619	chr17	4534607	4534608	rs11568131	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17p13.2		rs11568131-G	0.841	3E-14				Affymetrix [10369434] (imputed)	N
619	chr17	4535313	4535314	rs34210653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	17p13.2		rs34210653-A	NR	2E-15		0.6967	[0.52-0.87] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
619	chr17	4535313	4535314	rs34210653	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17p13.2		rs34210653-G	0.979	2E-49				Affymetrix [10369434] (imputed)	N
619	chr17	4535313	4535314	rs34210653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.2	ALOX15	rs34210653-A	0.021015	2E-117		0.17930405	[0.16-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4535313	4535314	rs34210653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.2	ALOX15	rs34210653-A	0.021014	2E-117		0.17845477	[0.16-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4535313	4535314	rs34210653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs34210653-A	0.0203111	1E-137				Affymetrix, Illumina [19872809] (imputed)	N
619	chr17	4535313	4535314	rs34210653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17p13.2	NR	rs34210653-A	0.020746	8E-140		0.175565	[0.16-0.19] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
619	chr17	4535313	4535314	rs34210653	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17p13.2	NR	rs34210653-G	0.97875	9E-10		1.1385632	[1.09-1.18]	Affymetrix [15688218] (imputed)	N
619	chr17	4535313	4535314	rs34210653	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	17p13.2	ALOX15	rs34210653-G	0.97838	2E-9		1.2914891	[1.19-1.4]	Affymetrix [15688218] (imputed)	N
619	chr17	4535313	4535314	rs34210653	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	17p13.2	NR	rs34210653-G	0.97875	2E-10		1.1309658	[1.09-1.17]	Affymetrix [15688218] (imputed)	N
619	chr17	4535313	4535314	rs34210653	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	17p13.2	ALOX15	rs34210653-G	0.975	8E-27		3.125	[2.56-3.85]	Affymetrix, Illumina [up to 37123566] (imputed)	N
619	chr17	4535313	4535314	rs34210653	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Chronic rhinosinusitis	251 European ancestry whole-genome sequenced cases, 5,357 European ancestry cases, 13,957 European ancestry whole-genome sequenced controls, 746,129 European ancestry controls	NA	17p13.2	ALOX15	rs34210653-G	0.99	1E-8		1.5625	[1.33-1.82]	Affymetrix, Illumina [up to 37123566] (imputed)	N
619	chr17	4535313	4535314	rs34210653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17p13.2	ALOX15	rs34210653-A	0.0214	2E-39		0.1622121	[0.14-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4535313	4535314	rs34210653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17p13.2	ALOX15	rs34210653-A	0.0213	3E-32		0.1466409	[0.12-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4535313	4535314	rs34210653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17p13.2	ALOX15	rs34210653-A	0.0213	6E-40		0.1630987	[0.14-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4535313	4535314	rs34210653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17p13.2	ALOX15	rs34210653-A	0.0213	3E-36		0.1557669	[0.13-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4535313	4535314	rs34210653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17p13.2	ALOX15	rs34210653-A	0.0214	2E-42		0.168308	[0.14-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4542348	4542349	rs113604586	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	17p13.2		rs113604586-?	NR	1E-24		0.201229	[0.16-0.24] unit decrease	NR [9800000] (imputed)	N
619	chr17	4542348	4542349	rs113604586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.2	ALOX15	rs113604586-C	0.00289399999999995	2E-21		0.21461952	[0.17-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4542348	4542349	rs113604586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.2	ALOX15	rs113604586-C	0.00289399999999995	3E-20		0.20716025	[0.16-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4542348	4542349	rs113604586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17p13.2	ALOX15	rs113604586-C	0.0034	4E-9		0.1958404	[0.13-0.26] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4542348	4542349	rs113604586	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17p13.2	ALOX15	rs113604586-C	0.0034	2E-10		0.2104417	[0.15-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr17	4544568	4544569	rs752012098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	17p13.2		rs752012098-T	0.097808	1E-9		0.0490036	[0.033-0.065] unit increase	Illumina [13470073] (imputed)	N
619	chr17	4545217	4545218	rs7220870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.2	ALOX15	rs7220870-A	0.221057	1E-12		0.019121518	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
619	chr17	4549801	4549802	rs185900616	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs185900616-A	NR	8E-19	(SM(34:0;2))	0.9687	[0.75-1.18] unit decrease	Illumina [~ 9300000] (imputed)	N
619	chr17	4549801	4549802	rs185900616	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs185900616-A	NR	6E-11	(SM(42:2;2))	0.7254	[0.51-0.94] unit decrease	Illumina [~ 9300000] (imputed)	N
619	chr17	4549801	4549802	rs185900616	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs185900616-A	NR	2E-10	(SM(40:1;2))	0.7138	[0.49-0.93] unit decrease	Illumina [~ 9300000] (imputed)	N
619	chr17	4560908	4560909	rs56020376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.2		rs56020376-G	0.241932	1E-14		0.023277408	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr17	4568953	4568955	rs68190844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17p13.2	intergenic	rs68190844-C	0.7586	4E-18		0.03607135	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
620	chr17	4587725	4587726	rs61250563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	17p13.2	NR	rs61250563-A	0.904768	7E-10		0.05685	[0.039-0.075] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
620	chr17	4604835	4604836	rs9901392	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	17p13.2	PELP1	rs9901392-?	NR	4E-8		0.04745	[0.031-0.064] unit increase novel	Illumina [6108953] (imputed)	N
620	chr17	4612865	4612866	rs8071086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.2		rs8071086-?	NR	3E-11				NR [~ 8900000] (imputed)	N
620	chr17	4613629	4613630	rs34230287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.2	ARRB2	rs34230287-T	0.238953	2E-32		0.030664518	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
620	chr17	4616386	4616387	rs35592645	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17p13.2		rs35592645-C	0.751	4E-15				Affymetrix [10369434] (imputed)	N
620	chr17	4616386	4616387	rs35592645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs35592645-A	0.230487	1E-43				Affymetrix, Illumina [23472807] (imputed)	N
620	chr17	4618100	4618101	rs144830084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.2	ARRB2	rs144830084-T	0.256467	3E-10		0.015895534	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
620	chr17	4618100	4618101	rs144830084	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.2	CXCL16	rs144830084-T	0.256	1E-15	(C-X-C motif chemokine 16, CXCL16.2436.49.4)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
620	chr17	4622637	4622638	rs1045280	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	17p13.2	PEPL1, ARRB2	rs1045280-C	NR	2E-7		1.4375	NR	Illumina [up to 1244428] (imputed)	N
620	chr17	4624965	4624966	rs9913156	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p13.2	ARRB2	rs9913156-T	0.7518	4E-15		0.03284058	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
620	chr17	4625891	4625892	rs35186877	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	17p13.2		rs35186877-A	0.2	8E-58		0.1611	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
620	chr17	4625891	4625892	rs35186877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.2	ARRB2	rs35186877-A	0.215702	5E-17		0.022669727	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
620	chr17	4625891	4625892	rs35186877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17p13.2	NR	rs35186877-A	0.213822	2E-42		0.031862	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
620	chr17	4625891	4625892	rs35186877	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	17p13.2	CXCL16	rs35186877-G	0.81	3E-13		0.21	unit increase	Illumina [5270624] (imputed)	N
620	chr17	4626466	4626470	rs533842742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17p13.2		rs533842742-A	NR	5E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
620	chr17	4627505	4627506	rs111257450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17p13.2		rs111257450-A	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
620	chr17	4635447	4635448	rs144339814	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	17p13.2		rs144339814-A	NR	6E-6		2.5761	[1.49-3.66] unit increase	Illumina [NR] (imputed)	N
620	chr17	4667971	4667972	rs75679663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	17p13.2		rs75679663-C	0.991398	4E-8		0.121122	[0.078-0.164] unit increase	NR [11722792] (imputed)	N
620	chr17	4667971	4667972	rs75679663	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	17p13.2		rs75679663-C	0.991398	4E-8		0.12046	[0.077-0.163] unit increase	NR [11722792] (imputed)	N
620	chr17	4667971	4667972	rs75679663	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17p13.2	TM4SF5	rs75679663-C	0.991252	9E-12		0.0738773	[0.053-0.095] unit increase	Affymetrix [NR] (imputed)	N
620	chr17	4667971	4667972	rs75679663	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.2	NR	rs75679663-A	0.011	2E-15	(Glycolipid transfer protein domain-containing protein 2, GLTPD2.7948.129.3)	0.98	[0.74-1.22] unit decrease	Affymetrix [10572788] (imputed)	N
620	chr17	4667983	4667984	rs193042029	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	17p13.2	TM4SF5	rs193042029-G	0.01	8E-9		0.17	[0.11-0.23] s.d. decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
620	chr17	4676451	4676452	rs2326100	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.2	CXCL16	rs2326100-G	0.63	2E-9	(CXCL16, 2436_49_4)	0.15513672	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr17	4678854	4678855	rs7214066	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	17p13.2	TM4SF5	rs7214066-?	NR	4E-6				Affymetrix, Illumina [15642250] (imputed)	N
620	chr17	4679199	4679200	rs78050081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLTPD2	5,365 Icelandic ancestry individuals	NA	17p13.2		rs78050081-T	0.01812	9E-14		0.519662	[0.38-0.66] unit decrease	Illumina [7506463] (imputed)	N
620	chr17	4679892	4679893	rs4790231	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	17p13.2		rs4790231-A	0.49	1E-26		0.0885	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
620	chr17	4683034	4683035	rs12051548	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	17p13.2	GLTPD2, TM4SF5, VM01	rs12051548-?	0.06	1E-11				Illumina [~ 2000000] (imputed)	N
620	chr17	4683034	4683035	rs12051548	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	17p13.2	PLD2	rs12051548-?	NR	1E-9	(levels)	0.0	[0.70-0.90] % increase	Illumina [NR] (imputed)	N
620	chr17	4685227	4685228	rs34460487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.2	GLTPD2	rs34460487-A	0.346	7E-25	(Glycolipid transfer protein domain-containing protein 2, GLTPD2.7948.129.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
620	chr17	4686699	4686700	rs11867239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17p13.2		rs11867239-G	NR	1E-10		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
620	chr17	4690037	4690038	rs8078118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLTPD2	5,365 Icelandic ancestry individuals	NA	17p13.2		rs8078118-A	0.3526	7E-34		0.227581	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
620	chr17	4690499	4690500	rs9892407	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.2	GLTPD2	rs9892407-C	0.65234375	1E-24	(GLTPD2, 7948_129_3)	0.25837335	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
620	chr17	4692153	4692154	rs190261815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17p13.2		rs190261815-T	NR	3E-9		0.2278	[0.15-0.3] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
620	chr17	4692153	4692154	rs190261815	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17p13.2		rs190261815-T	0.016434917	3E-9		0.22780186	[0.15-0.3] unit decrease	Illumina [13429980] (imputed)	N
620	chr17	4692558	4692559	rs2304969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17p13.2		rs2304969-G	0.85408	4E-8		0.031431	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
620	chr17	4692558	4692559	rs2304969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17p13.2		rs2304969-G	0.854024	1E-8		0.0337419	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
620	chr17	4692558	4692559	rs2304969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.2		rs2304969-G	0.854081	7E-9		0.0332952	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	2E-9		0.181918	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	1E-10		0.19453	[0.14-0.25] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	5E-11		0.198477	[0.14-0.26] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	2E-12		0.213437	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	3E-16		0.248605	[0.19-0.31] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	2E-14		0.231477	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	4E-15		0.237384	[0.18-0.3] unit increase	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.2		rs79202680-G	0.995399	6E-10		0.186315	[0.13-0.25] unit decrease	NR [11722792] (imputed)	N
620	chr17	4692639	4692640	rs79202680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17p13.2		rs79202680-T	NR	8E-13		0.1219	[0.089-0.155] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
620	chr17	4692639	4692640	rs79202680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17p13.2		rs79202680-T	NR	2E-8		0.095	[0.062-0.128] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
620	chr17	4692639	4692640	rs79202680	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs79202680-T	NR	9E-12	(SM(42:2;2))	0.6104	[0.43-0.79] unit decrease	Illumina [~ 9300000] (imputed)	N
620	chr17	4692639	4692640	rs79202680	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs79202680-T	NR	7E-9	(Total_SM)	0.5013	[0.33-0.67] unit decrease	Illumina [~ 9300000] (imputed)	N
620	chr17	4692639	4692640	rs79202680	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs79202680-T	NR	3E-22	(SM(34:0;2))	0.8534	[0.68-1.03] unit decrease	Illumina [~ 9300000] (imputed)	N
620	chr17	4692639	4692640	rs79202680	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs79202680-T	NR	2E-15	(SM(40:1;2))	0.7154	[0.54-0.89] unit decrease	Illumina [~ 9300000] (imputed)	N
620	chr17	4693901	4693902	rs73339979	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.2	intergenic	rs73339979-C	0.1787	8E-15		0.0588	[0.044-0.074] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
620	chr17	4693901	4693902	rs73339979	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.2	intergenic	rs73339979-C	0.1747	4E-11		0.0494	[0.035-0.064] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
620	chr17	4697254	4697255	rs79404002	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	17p13.2	PLD2	rs79404002-A		3E-6		1.29	[NR]	Illumina [> 644674] (imputed)	N
620	chr17	4712616	4712617	rs2286672	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	17p13.2	PLD2	rs2286672-T		3E-9		1.25	[1.16-1.35]	Illumina [644674]	N
621	chr17	4721375	4721376	rs17854914	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p13.2	NR	rs17854914-A	0.859373	3E-10		0.0179618	[0.012-0.024] unit decrease	NR [NR]	N
621	chr17	4729411	4729412	rs72835011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.2	NR	rs72835011-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
621	chr17	4729683	4729684	rs76705156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.2		rs76705156-?	NR	1E-9				NR [~ 8900000] (imputed)	N
621	chr17	4732466	4732467	rs11654671	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	17p13.2		rs11654671-T	0.2348	4E-8		0.01611	[0.01-0.022] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
621	chr17	4737489	4737490	rs59816081	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p13.2		rs59816081-T	0.886	2E-9		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
621	chr17	4738957	4738958	rs9895848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p13.2		rs9895848-T	NR	9E-29		0.0271	[0.022-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
621	chr17	4738957	4738958	rs9895848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p13.2	MINK1	rs9895848-T	0.345436	7E-9		0.013758292	[0.0091-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4738957	4738958	rs9895848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.2	MINK1	rs9895848-T	0.345436	7E-15		0.01848551	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4738957	4738958	rs9895848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.2	MINK1	rs9895848-T	0.345465	1E-25		0.025163585	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4738957	4738958	rs9895848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p13.2	MINK1	rs9895848-T	0.351	1E-14		0.03045967	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4749205	4749206	rs36064573	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17p13.2		rs36064573-A	0.243	1E-13				Affymetrix [10369434] (imputed)	N
621	chr17	4755423	4755424	rs9904177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.2		rs9904177-?	NR	4E-14				NR [~ 8900000] (imputed)	N
621	chr17	4755423	4755424	rs9904177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.2		rs9904177-?	NR	9E-8				NR [~ 8900000] (imputed)	N
621	chr17	4767586	4767587	rs112477024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17p13.2		rs112477024-C	NR	8E-9		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
621	chr17	4770196	4770197	rs62073635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17p13.2	MINK1	rs62073635-C	0.3543	4E-10		0.02429019	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4774813	4774814	rs181807530	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.2		rs181807530-C	0.996322	5E-10		0.210555	[0.14-0.28] unit increase	NR [11722792] (imputed)	N
621	chr17	4774813	4774814	rs181807530	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	17p13.2	MINK1	rs181807530-G	0.04	5E-25	(Sphingomyelin)	0.37	[0.29-0.45] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
621	chr17	4778486	4778487	rs8078776	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17p13.2	MINK1	rs8078776-A	NR	9E-6		1.0549	NR	Affymetrix, Illumina [8278136] (imputed)	N
621	chr17	4780794	4780795	rs72835045	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	17p13.2	MINK1	rs72835045-G	0.6699999999999999	2E-12		4.0	[2.7-5.88]	Affymetrix [508192]	N
621	chr17	4801162	4801163	rs7774	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17p13.2	MINK1	rs7774-A	0.33	9E-10		0.43	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
621	chr17	4801162	4801163	rs7774	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17p13.2	MINK1	rs7774-A	0.3274	3E-10		0.4572	[0.31-0.6] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
621	chr17	4802945	4802946	rs117949012	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs117949012-C	NR	5E-10	(SM(42:2;2))	0.5778	[0.4-0.76] unit decrease	Illumina [~ 9300000] (imputed)	N
621	chr17	4802945	4802946	rs117949012	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs117949012-C	NR	4E-13	(SM(40:1;2))	0.6783	[0.5-0.86] unit decrease	Illumina [~ 9300000] (imputed)	N
621	chr17	4805388	4805389	rs72835059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.2	NR	rs72835059-A	NR	2E-9		0.0265	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
621	chr17	4805388	4805389	rs72835059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.2	NR	rs72835059-A	NR	3E-9		0.0249	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
621	chr17	4805436	4805437	rs72835061	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	17p13.2	CHRNE	rs72835061-A	0.098	2E-10		1.09	[1.06-1.11]	Affymetrix, Illumina [up to 14542816] (imputed)	N
621	chr17	4813565	4813566	rs59419995	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17p13.2		rs59419995-C	0.923	5E-14				Affymetrix [10369434] (imputed)	N
621	chr17	4813956	4813957	rs11655988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.2		rs11655988-C	0.320088	8E-12		0.016349843	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4814688	4814689	rs72835070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GP1BA	5,359 Icelandic ancestry individuals	NA	17p13.2		rs72835070-T	0.08248	3E-17		0.283573	[0.22-0.35] unit increase	Illumina [7506463] (imputed)	N
621	chr17	4814688	4814689	rs72835070	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.2	GP1BA	rs72835070-C	0.92140625	2E-14	(GP1BA, 4990_87_1)	0.34558523	[0.26-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
621	chr17	4815869	4815870	rs72835072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p13.2		rs72835072-T	NR	1E-8		0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
621	chr17	4824624	4824625	rs12602901	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17p13.2	RNF167	rs12602901-C	0.17	1E-26	(X-03056--N-[3-(2-Oxopyrrolidin-1-yl)propyl]acetamide)	0.037	[0.031-0.043] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
621	chr17	4824842	4824843	rs79648989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17p13.2		rs79648989-A	NR	6E-9		0.0445	[0.03-0.059] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
621	chr17	4826591	4826592	rs72835078	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.2	GP1BA	rs72835078-T	0.072	9E-12	(Platelet glycoprotein Ib alpha chain, GP1BA.4990.87.1)	0.33	[0.23-0.43] unit increase	Affymetrix [10572788] (imputed)	N
621	chr17	4826591	4826592	rs72835078	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	17p13.2	CHRNE, GP1BA	rs72835078-?	NR	5E-60		0.1075	[0.095-0.12] unit increase novel	Illumina [6108953] (imputed)	N
621	chr17	4829559	4829560	rs34629349	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	17p13.2	INCA1	rs34629349-?	NR	2E-14		0.11	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
621	chr17	4834208	4834209	rs2243086	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	17p13.2	NR	rs2243086-?	NR	4E-38		0.05461	[0.046-0.063] unit increase novel	Illumina [6108953] (imputed)	N
621	chr17	4835626	4835627	rs56337033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.2	GP1BA	rs56337033-T	0.00333899999999998	2E-35		0.26312295	[0.22-0.3] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4835626	4835627	rs56337033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.2	GP1BA	rs56337033-T	0.00334199999999996	1E-13		0.15815753	[0.12-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4835626	4835627	rs56337033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	GP1BA	rs56337033-T	0.00334199999999996	6E-24		0.21368012	[0.17-0.26] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4835626	4835627	rs56337033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17p13.2	GP1BA	rs56337033-T	0.0052	1E-12		0.2014849	[0.15-0.26] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4835851	4835852	rs81663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17p13.2	Intergenic	rs81663-A	0.6338	2E-9	(MTAG)	0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
621	chr17	4835851	4835852	rs81663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17p13.2	Intergenic	rs81663-A	0.6338	1E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
621	chr17	4836380	4836381	rs6065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	GP1BA	rs6065-T	0.074223	9E-30		0.048519064	[0.04-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4836380	4836381	rs6065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs6065-C	0.921699	4E-37				Affymetrix, Illumina [17210439] (imputed)	N
621	chr17	4836380	4836381	rs6065	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p13.2	NR	rs6065-C	0.925485	4E-39		0.047786	[0.041-0.055] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
621	chr17	4836380	4836381	rs6065	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	17p13.2	NR	rs6065-?	NR	2E-6		3.339887	[1.97-4.71] unit increase	Illumina [30743395] (imputed)	N
621	chr17	4836380	4836381	rs6065	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	17p13.2	GP1BA	rs6065-T	NR	3E-11		4.191	[2.96-5.43] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
621	chr17	4836380	4836381	rs6065	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	17p13.2	GP1BA	rs6065-T	0.12	2E-12		0.124	[0.089-0.159] unit increase	Illumina [561583]	N
621	chr17	4836484	4836485	rs371226354	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	17p13.2		rs371226354-?	NR	2E-12		1.09184	[0.79-1.39] unit increase	NR [9800000] (imputed)	N
621	chr17	4836484	4836485	rs371226354	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	17p13.2		rs371226354-?	NR	3E-22		1.46654	[1.18-1.76] unit decrease	NR [9800000] (imputed)	N
621	chr17	4836484	4836485	rs371226354	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	17p13.2		rs371226354-?	NR	2E-30		1.54121	[1.27-1.82] unit increase	NR [9800000] (imputed)	N
621	chr17	4837194	4837195	rs553749201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.2	GP1BA	rs553749201-A	0.052843	2E-18		0.045366105	[0.035-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4837194	4837195	rs553749201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.2	GP1BA	rs553749201-A	0.052853	3E-41		0.06933016	[0.059-0.079] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4837194	4837195	rs553749201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.2	GP1BA	rs553749201-A	0.052844	2E-32		0.061108626	[0.051-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4837194	4837195	rs553749201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	GP1BA	rs553749201-A	0.052856	2E-19		0.046243314	[0.036-0.056] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4837194	4837195	rs553749201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17p13.2	GP1BA	rs553749201-A	0.0547	1E-21		0.07759813	[0.062-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4837194	4837195	rs553749201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p13.2	GP1BA	rs553749201-A	0.0547	2E-15		0.06537899	[0.049-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4837194	4837195	rs553749201	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17p13.2	GP1BA	rs553749201-A	0.0547	8E-10		0.05033656	[0.034-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4837743	4837748	rs772106076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	17p13.2		rs772106076-?	NR	2E-19		0.281101	[0.21-0.35] unit increase	NR [9800000] (imputed)	N
621	chr17	4837743	4837748	rs772106076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	17p13.2		rs772106076-?	NR	5E-18		0.262587	[0.2-0.33] unit decrease	NR [9800000] (imputed)	N
621	chr17	4837743	4837748	rs772106076	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	17p13.2		rs772106076-?	NR	2E-53		0.458598	[0.4-0.52] unit increase	NR [9800000] (imputed)	N
621	chr17	4839148	4839149	rs2243102	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p13.2	NR	rs2243102-C	0.4224	5E-8		0.0255	[0.016-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
621	chr17	4839399	4839400	rs2243103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.2	RNF167	rs2243103-G	0.074205	6E-36		0.05391254	[0.045-0.062] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4839399	4839400	rs2243103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.2	RNF167	rs2243103-G	0.074183	1E-59		0.07009267	[0.062-0.079] unit increase	Affymetrix [93095623] (imputed)	N
621	chr17	4839399	4839400	rs2243103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.2	NR	rs2243103-G	0.076197	3E-98		0.072876	[0.066-0.08] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
621	chr17	4840525	4840526	rs75322286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.2	NR	rs75322286-T	NR	2E-9		0.046	[0.031-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
621	chr17	4840867	4840868	rs1060431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p13.2		rs1060431-A	NR	2E-135		0.0833	[0.077-0.09] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
621	chr17	4840867	4840868	rs1060431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17p13.2		rs1060431-A	0.118915	3E-85		0.100228	[0.09-0.11] unit increase	Illumina [13478928] (imputed)	N
621	chr17	4840867	4840868	rs1060431	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17p13.2		rs1060431-G	0.926	6E-40				Affymetrix [10369434] (imputed)	N
621	chr17	4840867	4840868	rs1060431	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	17p13.2		rs1060431-A	0.7689	9E-6		0.0595	[0.033-0.086] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
621	chr17	4840867	4840868	rs1060431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.2	SLC25A11	rs1060431-A	0.074053	8E-81		0.08184654	[0.073-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4840867	4840868	rs1060431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs1060431-A	0.0874692	3E-170				Affymetrix, Illumina [24588908] (imputed)	N
621	chr17	4840867	4840868	rs1060431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	17p13.2	NR	rs1060431-G	0.884852	5E-73		0.105657	[0.094-0.117] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
621	chr17	4840867	4840868	rs1060431	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17p13.2	SLC25A11	rs1060431-A	0.0736	1E-12		0.04995122	[0.036-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4840867	4840868	rs1060431	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17p13.2	SLC25A11	rs1060431-A	0.0736	2E-26		0.07337288	[0.06-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4840867	4840868	rs1060431	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p13.2	SLC25A11	rs1060431-A	0.0735	1E-19		0.0636259	[0.05-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
621	chr17	4849266	4849267	rs151313170	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	PFN1	rs151313170-A	0.00136199999999997	5E-12		0.2174653	[0.16-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr17	4849267	4849268	rs140547520	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	17p13.2		rs140547520-?	NR	9E-19		0.181673	[0.14-0.23] unit decrease	NR [9800000] (imputed)	N
622	chr17	4852462	4852463	rs4790714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17p13.2	ENO3	rs4790714-T	0.667526	1E-9		0.014319542	[0.0097-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr17	4852462	4852463	rs4790714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs4790714-C	0.348408	4E-10				Affymetrix, Illumina [22063850] (imputed)	N
622	chr17	4852462	4852463	rs4790714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17p13.2	NR	rs4790714-C	0.333591	9E-13		0.014289	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
622	chr17	4852462	4852463	rs4790714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p13.2		rs4790714-?	NR	1E-11				NR [~ 8900000] (imputed)	N
622	chr17	4854479	4854480	rs366577	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.2	NR	rs366577-C	0.4942	4E-8		0.0222	[0.014-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
622	chr17	4862961	4862962	rs12451097	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17p13.2	SPAG7	rs12451097-G	0.801509	3E-11	(1-methylhistamine)	0.215	[0.15-0.28] unit decrease	Illumina [13039987] (imputed)	N
622	chr17	4869143	4869143	rs571461910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17p13.2	SPAG7	rs571461910-TTATC	0.0612	4E-9		0.04505136	[0.03-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
622	chr17	4871571	4871572	rs149066790	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	17p13.2	GLTPD2	rs149066790-A	NR	5E-20	(SM(34:0;2))	0.8924	[0.7-1.08] unit decrease	Illumina [~ 9300000] (imputed)	N
622	chr17	4874214	4874215	rs452825	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.2	CAMTA2	rs452825-T	0.1842	3E-14		0.1303	[0.095-0.166] unit increase	Affymetrix [~ 11900000] (imputed)	N
622	chr17	4882951	4882952	rs1859434	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.2	CAMTA2	rs1859434-G	0.1898	1E-14		0.1306	[0.096-0.165] unit increase	Affymetrix [~ 11900000] (imputed)	N
622	chr17	4898532	4898533	rs471064	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs471064-G	0.189775	6E-25		0.113834	[0.091-0.137] increase	Affymetrix [11014269] (imputed)	N
622	chr17	4901981	4901982	rs11658587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p13.2		rs11658587-T	NR	4E-12		0.0422	[0.03-0.054] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
622	chr17	4901981	4901982	rs11658587	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	17p13.2	KIF1C	rs11658587-?	NR	7E-9		0.104	NR L increase	Affymetrix [9390170] (imputed)	N
622	chr17	4901981	4901982	rs11658587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p13.2	NR	rs11658587-T	NR	6E-15		0.051	[0.038-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
622	chr17	4901981	4901982	rs11658587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p13.2	KIF1C	rs11658587-T	0.036776	2E-10		0.037728213	[0.026-0.049] unit increase	Affymetrix [93095623] (imputed)	N
622	chr17	4901981	4901982	rs11658587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs11658587-T	0.0336886	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
622	chr17	4901981	4901982	rs11658587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p13.2	NR	rs11658587-T	0.035044	1E-10		0.032121	[0.022-0.042] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
622	chr17	4901981	4901982	rs11658587	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p13.2	INCA1	rs11658587-A	0.024	6E-6	(Sleep duration )	0.03	[NR] min/d increase	Illumina [899892]	N
622	chr17	4918457	4918458	rs377623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.2	NR	rs377623-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
622	chr17	4922127	4922128	rs238282	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p13.2	NR	rs238282-?	NR	1E-7				Affymetrix [NR]	N
622	chr17	4924946	4924947	rs117100864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.2	KIF1C	rs117100864-C	0.037272	2E-28		0.06558769	[0.054-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr17	4925474	4925475	rs148934699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.2	NR	rs148934699-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
622	chr17	4930370	4930371	rs12603055	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	17p13.2	CHRNE, GP1BA, ZFP3, CAMTA2, ENO3, INCA1,  KIF1C,  PFN1, RNF167, SLC52A1, SPAG7	rs12603055-C	NR	2E-14		0.234	[0.17-0.29] unit decrease	Affymetrix [7701190] (imputed)	N
622	chr17	4938923	4938924	rs410520	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	17p13.2	SLC52A1	rs410520-C	0.446224	5E-8		0.0113351	[0.0073-0.0154] unit decrease	NR [16516521] (imputed)	N
622	chr17	4943175	4943176	rs10445262	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	17p13.2	SLC52A1, ZFP3	rs10445262-G	0.243685768	5E-6		1.0889617	[1.049921099-1.129453984]	Illumina [10439017] (imputed)	N
622	chr17	4953551	4953552	rs56263450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17p13.2		rs56263450-C	NR	2E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
622	chr17	4955429	4955430	rs62072534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.2		rs62072534-?	NR	2E-8				NR [~ 8900000] (imputed)	N
622	chr17	4968141	4968142	rs8069681	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	17p13.2		rs8069681-?	NR	1E-6	(lmp)	1.7		Illumina [11595112] (imputed)	N
622	chr17	4969939	4969940	rs7209200	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	17p13.2		rs7209200-?	NR	3E-8				Illumina [NR] (imputed)	N
622	chr17	4973781	4973782	rs9897420	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17p13.2		rs9897420-G	0.543	3E-17				Affymetrix [10369434] (imputed)	N
623	chr17	4984446	4984447	rs9916042	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	17p13.2	SCIMP	rs9916042-A	NR	5E-8		5.461	NR z-score increase	Affymetrix [10847151] (imputed)	N
623	chr17	5004720	5004720	rs368622639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17p13.2		rs368622639-CA	NR	1E-16		0.0209	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
623	chr17	5005286	5005287	rs73331351	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	17p13.2	ZNF232, ZFP3, USP6	rs73331351-G	NR	5E-6		8.24	[3.32-20.44]	Illumina [NR]	N
623	chr17	5008235	5008236	rs3845261	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	17p13.2	NR	rs3845261-?	NR	4E-8		1.06	[1.04, 1.08]	Affymetrix [7795605] (imputed)	N
623	chr17	5008235	5008236	rs3845261	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	17p13.2	NR	rs3845261-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
623	chr17	5014211	5014212	rs73976310	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	17p13.2	NR	rs73976310-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
624	chr17	5126673	5126674	rs2641256	32266149	He Y	2020-03-20	Front Oncol	Genetic Variants Were Associated With the Prognosis of Head and Neck Squamous Carcinoma.	Head and neck squamous cell carcinoma	261 Chinese ancestry cases	525 Chinese ancestry cases	17p13.2	NR	rs2641256-?		8E-6		1.49		Illumina [247870]	N
624	chr17	5137046	5137047	rs7225151	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	17p13.2	SCIMP	rs7225151-?	NR	1E-8		1.1	[1.06-1.14]	Affymetrix [up to 7055881] (imputed)	N
624	chr17	5137046	5137047	rs7225151	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	17p13.2	NR	rs7225151-?	NR	4E-6				Affymetrix [7795605] (imputed)	N
624	chr17	5137046	5137047	rs7225151	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	17p13.2	NR	rs7225151-?	NR	1E-10				Affymetrix [7795605] (imputed)	N
624	chr17	5137046	5137047	rs7225151	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	17p13.2	SCIMP	rs7225151-A	0.121	4E-7		1.1	[1.06-1.15]	Illumina [7055881] (imputed)	N
624	chr17	5138979	5138980	rs113260531	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	17p13.2	SCIMP	rs113260531-A	0.12	9E-10		6.12	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
624	chr17	5138979	5138980	rs113260531	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	17p13.2	SCIMP	rs113260531-A	NR	3E-6		4.6568017	NR z-score increase	Illumina [up to 9862738] (imputed)	N
624	chr17	5171745	5171746	rs9902384	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.2	NR	rs9902384-A	0.7534460000000001	8E-9		0.00556257	[0.0037-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
624	chr17	5171745	5171746	rs9902384	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.2	NR	rs9902384-A	0.7534460000000001	3E-11		0.00699059	[0.0049-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
624	chr17	5183203	5183207	rs138171347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17p13.2	RABEP1	rs138171347-A	0.4973	4E-12		0.02479711	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
624	chr17	5219510	5219511	rs7216169	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	17p13.2	RABEP1	rs7216169-T	0.22	1E-7		0.45	[0.27-0.63] unit increase	Illumina [~ 31000000] (imputed)	N
625	chr17	5262748	5262749	rs11078559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	RABEP1	rs11078559-G	0.493891	5E-14		0.01692272	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
625	chr17	5272579	5272580	rs72634030	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	17p13.2	C1QBP	rs72634030-A	NR	7E-8		0.110343	[0.07-0.15] unit increase	Illumina [8380626] (imputed)	N
625	chr17	5272579	5272580	rs72634030	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	17p13.2	C1QBP	rs72634030-A	0.23	2E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
625	chr17	5275917	5275918	rs3026096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.2	NUP88, RABEP1	rs3026096-A	0.496068	5E-10		0.013947628	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
625	chr17	5278306	5278307	rs8067917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17p13.2		rs8067917-A	NR	2E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
625	chr17	5280439	5280440	rs3026101	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17p13.2	NA	rs3026101-T	0.7201	1E-17		0.015	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
625	chr17	5280439	5280440	rs3026101	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17p13.2	NR	rs3026101-T	NR	3E-13		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
625	chr17	5280439	5280440	rs3026101	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17p13.2	RABEP1	rs3026101-C	0.35	9E-9		0.014	[0.01-0.018] unit increase	Illumina [6108953] (imputed)	N
625	chr17	5283251	5283252	rs1000940	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17p13.2	NA	rs1000940-A	0.7168	8E-18		0.0152	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
625	chr17	5283251	5283252	rs1000940	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17p13.2	NA	rs1000940-A	0.7168	8E-18		0.0152	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
625	chr17	5283251	5283252	rs1000940	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17p13.2	NR	rs1000940-A	0.685265617581057	5E-9		0.017490005	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
625	chr17	5283251	5283252	rs1000940	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.2	RABEP1	rs1000940-G	0.321	2E-6	(EA, women)	0.02	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
625	chr17	5283251	5283252	rs1000940	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.2	RABEP1	rs1000940-G	0.32	2E-8		0.018	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
625	chr17	5283251	5283252	rs1000940	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p13.2	RABEP1	rs1000940-G	0.32	1E-8	(EA)	0.019	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
625	chr17	5288178	5288179	rs10792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17p13.2		rs10792-T	NR	2E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
625	chr17	5288178	5288179	rs10792	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17p13.2		rs10792-T	0.3	3E-8		0.012	nmol/L decrease	NR [NR] (imputed)	N
625	chr17	5288178	5288179	rs10792	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17p13.2		rs10792-T	0.3	1E-11				NR [NR] (imputed)	N
625	chr17	5288178	5288179	rs10792	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17p13.2		rs10792-T	0.3	8E-11		0.01	% increase	NR [NR] (imputed)	N
625	chr17	5288178	5288179	rs10792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.2	NR	rs10792-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
625	chr17	5288178	5288179	rs10792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.2		rs10792-?	NR	2E-12				NR [~ 8900000] (imputed)	N
625	chr17	5291772	5291772	rs112340061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p13.2		rs112340061-AT	NR	4E-9		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
625	chr17	5291772	5291772	rs112340061	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17p13.2	NR	rs112340061-AT	0.2998	2E-9		0.016206758	[0.011-0.022] unit increase	Affymetrix [10549349] (imputed)	N
625	chr17	5294742	5294743	rs545968244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.2	NUP88	rs545968244-G	7.71999999999995E-4	1E-21		0.47788864	[0.38-0.58] unit increase	Affymetrix [93095623] (imputed)	N
625	chr17	5295356	5295357	rs1806236	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.2	NR	rs1806236-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
625	chr17	5297037	5297038	rs58351927	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17p13.2	NUP88	rs58351927-A	0.697835	1E-11		0.0101443	[0.0072-0.0131] unit decrease	Affymetrix [12370749]	N
625	chr17	5323227	5323228	rs1806269	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17p13.2	NR	rs1806269-C	NR	1E-9		0.16	[0.1-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
625	chr17	5323227	5323228	rs1806269	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17p13.2	NR	rs1806269-C	NR	1E-10				Affymetrix, Illumina [NR] (imputed)	N
625	chr17	5326088	5326089	rs1071648	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	17p13.2	RPAIN, C17orf107	rs1071648-T	0.2874	5E-10		0.0124	[0.0085-0.0163] unit increase	Illumina [246328]	N
625	chr17	5326161	5326162	rs2189336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.2	RPAIN	rs2189336-A	0.478223	2E-21		0.021028284	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
625	chr17	5326161	5326162	rs2189336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.2	RPAIN	rs2189336-A	0.478249	3E-14		0.016855156	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
625	chr17	5326161	5326162	rs2189336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs2189336-A	0.593963	9E-26				Affymetrix, Illumina [24649327] (imputed)	N
625	chr17	5326161	5326162	rs2189336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p13.2	NR	rs2189336-A	0.481279	3E-27		0.020087	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
625	chr17	5326161	5326162	rs2189336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.2	NR	rs2189336-A	0.555076	4E-15				Affymetrix, Illumina [23114412] (imputed)	N
625	chr17	5326161	5326162	rs2189336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p13.2	NR	rs2189336-A	0.480202	1E-15		0.015548	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
625	chr17	5326161	5326162	rs2189336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.2		rs2189336-?	NR	2E-27				NR [~ 8900000] (imputed)	N
625	chr17	5330185	5330186	rs11650324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17p13.2		rs11650324-?	NR	1E-12				NR [~ 8900000] (imputed)	N
625	chr17	5331895	5331896	rs8070740	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	17p13.2	RPAIN	rs8070740-A	0.76	2E-9		0.15	[0.11-0.19] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
625	chr17	5338799	5338800	rs75549428	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL16	5,361 Icelandic ancestry individuals	NA	17p13.2		rs75549428-T	0.01034	5E-26		0.962724	[0.78-1.14] unit decrease	Illumina [7506463] (imputed)	N
625	chr17	5356576	5356577	rs72825701	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DHX33	rs72825701-?	NR	4E-11	(male)	3.70593	[NR] unit increase	Affymetrix [NR] (imputed)	N
626	chr17	5393088	5393089	rs1805465	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	17p13.2	DERL2	rs1805465-T		6E-6		2.339		Affymetrix [NR]	N
626	chr17	5393602	5393603	rs14043	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	17p13.2	MIS12	rs14043-T	NR	9E-6		0.21796075	[0.13-0.31] unit increase	Illumina [> 6200000] (imputed)	N
626	chr17	5400176	5400177	rs8079518	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.2	NR	rs8079518-?	NR	6E-6		0.0078902	[0.0045-0.0113] unit increase	Affymetrix [805426] (imputed)	N
626	chr17	5425423	5425424	rs62072729	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	17p13.2	NR	rs62072729-T	0.11853	4E-6				Illumina [5378266] (imputed)	N
627	chr17	5547991	5547992	rs11656006	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.2	MIS12	rs11656006-?	NR	1E-6	(CE 18:0)	0.3738087	[0.22-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
627	chr17	5569265	5569266	rs8077015	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17p13.2	NR	rs8077015-?	NR	1E-8				Illumina [7760689] (imputed)	N
627	chr17	5582333	5582334	rs2716882	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	17p13.2	NR	rs2716882-?	NR	2E-6	(genus_Sporacetigenium)	1.143128	[0.69-1.6] unit increase	Affymetrix [210924]	N
627	chr17	5596724	5596725	rs150899893	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	17p13.2		rs150899893-?	NR	3E-8		2.1372	[1.38-2.89] unit increase	Affymetrix [NR] (imputed)	N
627	chr17	5612639	5612640	rs75213074	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	17p13.2	WSCD1, NLRP1	rs75213074-?	0.97	7E-9		1.1235955	[1.08-1.16]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
628	chr17	5688739	5688740	rs115449386	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	17p13.2	NR	rs115449386-A	0.8714	3E-8		0.7131	[0.46-0.96] unit decrease	Affymetrix, Illumina [12989706] (imputed)	N
628	chr17	5691048	5691049	rs16955090	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.2	NR	rs16955090-A	0.0122	6E-10	(TGM2)	2.004	NR unit increase	Illumina [1671387] (imputed)	N
628	chr17	5699719	5699720	rs138973557	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.2	LOC339166, WSCD1	rs138973557-?	NR	2E-10	(African)			Affymetrix, Illumina [18800000] (imputed)	N
628	chr17	5699719	5699720	rs138973557	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.2	LOC339166, WSCD1	rs138973557-T	0.9026	2E-8	(African)	2.093	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
628	chr17	5735966	5735975	rs144940775	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17p13.2	NR	rs144940775-?	NR	9E-6	(female)	0.2033	[0.11-0.29] unit increase	Illumina [11133794] (imputed)	N
628	chr17	5736702	5736703	rs6502888	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17p13.2	NR	rs6502888-A	NR	5E-6	(female)	0.2051	[0.12-0.29] unit increase	Illumina [11133794] (imputed)	N
628	chr17	5744571	5744572	rs146313367	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	17p13.2	WSCD1	rs146313367-A	0.075	3E-6		0.125	[0.072-0.178] unit increase	Affymetrix [7287191] (imputed)	N
628	chr17	5760828	5760829	rs11870446	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	17p13.2	LOC339166	rs11870446-C	0.1238	3E-6		1.4836795	[1.26-1.75]	Illumina [7521072] (imputed)	N
629	chr17	5791646	5791647	rs1833339	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	17p13.2	NR	rs1833339-T	0.113	1E-7	(Males)	0.44861	[0.28-0.61] unit increase	Illumina [~ 6600000] (imputed)	N
629	chr17	5792598	5792599	rs7222544	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	17p13.2	LOC339166	rs7222544-?	NR	5E-6				Illumina [655023]	N
629	chr17	5829847	5829848	rs35841741	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	17p13.2	LOC339166	rs35841741-?	0.0	1E-10				Affymetrix [547296]	N
630	chr17	5907442	5907443	rs9303196	20876614	Yoon KA	2010-09-28	Hum Mol Genet	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	17p13.2	NR	rs9303196-T	0.07	8E-6		1.43	[1.14-1.82]	Affymetrix [246758]	N
630	chr17	5953652	5953653	rs143583196	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	17p13.2	WSCD1	rs143583196-?		3E-6				Illumina [7405822] (imputed)	N
631	chr17	6032528	6032529	rs35253088	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	17p13.2	WSCD1	rs35253088-T	0.87	7E-6		0.67	[0.38-0.96] unit increase	Illumina [5833901] (imputed)	N
631	chr17	6034753	6034754	rs12603280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17p13.2		rs12603280-?	NR	3E-12				NR [~ 8900000] (imputed)	N
631	chr17	6034830	6034831	rs7215990	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	17p13.2	WSCD1, ALOX15B	rs7215990-G	0.76	2E-8		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
631	chr17	6093950	6093951	rs3744728	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	17p13.2	WSC domain containing 1	rs3744728-C	NR	3E-6		1.51	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
631	chr17	6141676	6141677	rs7503953	23740775	Xie G	2013-09-01	Arthritis Rheum	Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.	Wegener's granulomatosis	459 European ancestry cases, 1,503 European ancestry controls	291 European ancestry cases, 317 European ancestry controls	17p13.2	WSCD1	rs7503953-A	0.171	2E-7		1.5	[1.29-1.76]	Illumina [287802]	N
632	chr17	6161784	6161785	rs151233628	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17p13.2	WSCD1, AIPL1	rs151233628-?		3E-8		0.0651	[0.042-0.088] unit decrease	Illumina [31500000] (imputed)	N
632	chr17	6161784	6161785	rs151233628	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	17p13.2	WSCD1, AIPL1	rs151233628-?	NR	2E-9		0.06513	[0.044-0.086] unit increase novel	Illumina [6108953] (imputed)	N
632	chr17	6197823	6197824	rs71370433	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17p13.2	WSCD1, AIPL1	rs71370433-C	0.01	8E-7		0.6706	[0.41-0.93] unit increase	Illumina [~ 9000000] (imputed)	N
632	chr17	6197823	6197824	rs71370433	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17p13.2	WSCD1, AIPL1	rs71370433-C	0.01	1E-6	(EA)	0.6614	[0.4-0.92] unit increase	Illumina [~ 9000000] (imputed)	N
632	chr17	6250053	6250054	rs79392787	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	17p13.2	intergenic	rs79392787-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
632	chr17	6251884	6251885	rs9902047	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.2	FAM64A	rs9902047-?	NR	2E-6	(sorbitol)	0.1855466	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
632	chr17	6274047	6274048	rs184640919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p13.2	NR	rs184640919-G	0.998807	9E-9		0.105709	[0.071-0.141] unit increase	Affymetrix [16582621] (imputed)	N
632	chr17	6274047	6274048	rs184640919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p13.2	NR	rs184640919-G	0.998807	8E-7		0.0963606	[0.059-0.134] unit increase	Affymetrix [16582614] (imputed)	N
632	chr17	6282470	6282471	rs73976923	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	17p13.2	intergenic	rs73976923-A	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
632	chr17	6288145	6288146	rs8075565	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	17p13.2	Intergenic	rs8075565-T	0.13	2E-6		0.28	[0.16-0.39] unit increase	NR [~ 38000000] (imputed)	N
632	chr17	6289982	6289983	rs1567843	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Android fat/gynoid fat ratio	2,109 White British ancestry male individuals	NA	17p13.2		rs1567843-G	NR	4E-8		0.05	unit decrease	NR [6137607] (imputed)	N
633	chr17	6310055	6310056	rs62060986	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	17p13.2	WSDC1, AIPL1	rs62060986-T	NR	7E-6	NR	4.48	z score decrease	Illumina [5300000] (imputed)	N
633	chr17	6319783	6319784	rs11657269	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	17p13.2	NR	rs11657269-G		5E-6		0.1188	[0.068-0.17] SD units decrease	NR [10700000] (imputed)	N
633	chr17	6326744	6326745	rs3892315	26015512	Komatsu M	2015-05-26	Clin Cancer Res	Pharmacoethnicity in Paclitaxel-Induced Sensory Peripheral Neuropathy.	Paclitaxel-induced cytotoxicity	57 Japanese ancestry lymphoblastoid cell lines, 59 Han Chinese ancestry lymphoblastoid cell lines	77 European ancestry lymphoblastoid cell lines, 87 Yoruban ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines	17p13.2	AIPL1	rs3892315-?	NR	9E-7		0.207	[NR] unit increase	NR [~ 4600000] (imputed)	N
633	chr17	6341869	6341870	rs58926603	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Hormone measurements	up to 1,200 European ancestry individuals	NA	17p13.2	AIPL1, FAM64A	rs58926603-?	NR	6E-9	(Free thyroxine (FT4))			Illumina [up to 10879115] (imputed)	N
633	chr17	6344126	6344127	rs6502955	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	17p13.2	NR	rs6502955-C	0.7709	4E-6		0.0192	[0.011-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
633	chr17	6356817	6356818	rs4796330	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.2	NR	rs4796330-?	NR	2E-7		0.0090999	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
633	chr17	6362113	6362114	rs1105916	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p13.2		rs1105916-C	0.504	2E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
633	chr17	6366927	6366928	rs76156693	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Diarrhea in mesalamine-treated irritable bowel disease	86 Japanese ancestry cases, 1,437 Japanese ancestry controls	23 Japanese ancestry cases, 765 Japanese ancestry controls	17p13.2	NR	rs76156693-C	0.0116	2E-7		7.08	[6.34-7.82]	NR [7215020] (imputed)	N
634	chr17	6427078	6427079	rs12941828	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	17p13.1	Intergenic	rs12941828-?	NR	2E-6		1.4	[NR]	Affymetrix [492217] (imputed)	N
634	chr17	6443309	6443310	rs117244812	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	17p13.1	NR	rs117244812-G		2E-6		0.7064	[0.41-1] SD units increase	NR [10700000] (imputed)	N
634	chr17	6469792	6469793	rs4796334	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.1	PITPNM3	rs4796334-A	0.5025	7E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix [19819130] (imputed)	N
634	chr17	6470597	6470598	rs2009598	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	PITPNM3	rs2009598-A	0.443	6E-10		0.1674	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
634	chr17	6473658	6473659	rs10521146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.1		rs10521146-?	NR	1E-11				NR [~ 8900000] (imputed)	N
634	chr17	6473827	6473828	rs7226020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17p13.1		rs7226020-C	NR	4E-18		0.0163	[0.013-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
634	chr17	6473827	6473828	rs7226020	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	KIAA0753	rs7226020-C	0.5726	2E-25		0.2759	[0.22-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
634	chr17	6473827	6473828	rs7226020	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17p13.1	KIAA0753	rs7226020-T	0.56	2E-14		0.256	[0.2-0.31] unit decrease	Affymetrix [~ 9800000] (imputed)	N
634	chr17	6473827	6473828	rs7226020	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.1	PITPNM3, KIAA0753	rs7226020-T		1E-7		0.217	unit decrease	Affymetrix [at least 2696785] (imputed)	N
634	chr17	6473827	6473828	rs7226020	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.1	PITPNM3, KIAA0753	rs7226020-T		2E-17		0.232	unit decrease	Affymetrix [at least 2696785] (imputed)	N
634	chr17	6479452	6479453	rs12937989	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	KIAA0753	rs12937989-A	0.3849	7E-11		0.2313	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
634	chr17	6525860	6525861	rs9898480	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p13.1	NR	rs9898480-T	0.569124	1E-11		0.0182946	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
634	chr17	6526018	6526019	rs2304976	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	LDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	17p13.1	PITPNM3, KIAA0753, TXNDC17, MED31, SLC13A5	rs2304976-?	NR	1E-7		0.1288	[0.08-0.177] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
634	chr17	6527875	6527876	rs75510837	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	17p13.1	KIAA0753	rs75510837-G	0.025	7E-6		1.88	[1.43-2.48]	Illumina [9327222] (imputed)	N
634	chr17	6546920	6546921	rs2240276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs2240276-?	NR	2E-9				NR [~ 8900000] (imputed)	N
634	chr17	6551619	6551620	rs2871289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.1	NR	rs2871289-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
635	chr17	6558556	6558557	rs10491083	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17p13.1	NR	rs10491083-?	NR	5E-6	(EA)	5.27	[4.39-6.15]	Illumina [905956]	N
635	chr17	6584877	6584878	rs680625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs680625-?	NR	2E-8				NR [~ 8900000] (imputed)	N
635	chr17	6595397	6595398	rs172642	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	17p13.1	SLC13A5, DVL2	rs172642-C	0.48	5E-18	(Citrate)	0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
635	chr17	6595929	6595930	rs170149	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17p13.1	SLC13A5	rs170149-A	0.07	1E-13	(citrate)	0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
635	chr17	6604707	6604708	rs218671	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial citrate	4,348 individuals	NA	17p13.1		rs218671-G	0.432554405	1E-11		0.155141	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
635	chr17	6607017	6607018	rs218676	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting citrate	4,734 individuals	NA	17p13.1		rs218676-A	0.177543956	7E-9		0.156691	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
635	chr17	6607017	6607018	rs218676	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	17p13.1	SLC13A5	rs218676-G	NR	5E-6		0.149	[0.084-0.214] unit increase	Illumina [628922]	N
635	chr17	6611797	6611798	rs75448233	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting citrate	4,734 individuals	NA	17p13.1		rs75448233-T	0.05825896	5E-13		0.361729	[0.26-0.46] mmol/l increase	Illumina [7701709] (imputed)	N
635	chr17	6612899	6612900	rs73342502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17p13.1	NR	rs73342502-C	NR	4E-10		0.0346	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
635	chr17	6613104	6613105	rs532802028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	17p13.1		rs532802028-C	0.993988	1E-14		0.217992	[0.16-0.27] unit decrease	NR [11722792] (imputed)	N
635	chr17	6613373	6613374	rs16956192	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial citrate	4,348 individuals	NA	17p13.1		rs16956192-T	0.103731	3E-9	meal response (conditional)	0.253922	[0.17-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
635	chr17	6614859	6614871	rs139436709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17p13.1		rs139436709-T	NR	2E-12		0.0262	[0.019-0.033] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
635	chr17	6620450	6620450	rs371719800	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	17p13.1		rs371719800-A	0.770045	9E-160		0.142902	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
635	chr17	6622977	6622978	rs8082182	33967749	Ooi BNS	2021-04-22	Front Pharmacol	Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia.	Atorvastatin-induced myalgia	14 Chinese ancestry cases, 74 Chinese ancestry controls, 12 Indian ancestry cases, 45 Indian ancestry controls, 4 Malay ancestry cases, 34 Malay ancestry controls	NA			rs8082182-?	NR	4E-6		17.87	[5.244-60.91]	Illumina [4554532]	N
635	chr17	6625384	6625385	rs11658922	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	17p13.1		rs11658922-?	NR	5E-10				Affymetrix [NR] (imputed)	N
635	chr17	6626308	6626309	rs67909507	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	17p13.1		rs67909507-?	NR	5E-9				Affymetrix [NR] (imputed)	N
635	chr17	6630903	6630904	rs11655205	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	17p13.1		rs11655205-?	NR	2E-8				Affymetrix [NR] (imputed)	N
635	chr17	6635372	6635373	rs9895559	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	17p13.1	CTC-281F24.2	rs9895559-A	0.45	2E-6		1.85	[1.43-2.38]	Affymetrix, Illumina [7000000] (imputed)	N
635	chr17	6642451	6642452	rs7224394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs7224394-C	NR	2E-12		0.0429	[0.031-0.055] unit increase	Affymetrix [9000000] (imputed)	N
635	chr17	6682883	6682884	rs4796354	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	17p13.1	Intergenic	rs4796354-?	NR	1E-6		1.389	[NR]	Affymetrix [492217] (imputed)	N
635	chr17	6683877	6683878	rs1509123	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17p13.1	SLC13A5	rs1509123-T	0.05	5E-9	(citrate)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
636	chr17	6711498	6711499	rs7211411	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial citrate	4,348 individuals	NA	17p13.1		rs7211411-A	0.06	5E-8		0.26	[0.16-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
636	chr17	6718165	6718166	rs372325888	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	17p13.1		rs372325888-AG	0.815082	2E-69		0.0918362	[0.082-0.102] unit increase	NR [11722792] (imputed)	N
636	chr17	6738528	6738529	rs75714614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs75714614-G	NR	5E-22		0.0562	[0.045-0.068] unit increase	Affymetrix [9000000] (imputed)	N
636	chr17	6742170	6742171	rs8073099	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	17p13.1		rs8073099-?	NR	6E-6		0.54	[0.31-0.77] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
636	chr17	6781412	6781413	rs58630086	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	17p13.1	NR	rs58630086-?	NR	6E-7				NR [up to 8466825] (imputed)	N
637	chr17	6882442	6882443	rs111816999	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17p13.1	Intergenic	rs111816999-T	NR	7E-7	(between families)	4.967	unit decrease	Affymetrix [up to 15107142] (imputed)	N
637	chr17	6900075	6900076	rs2073438	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	17p13.1	NR	rs2073438-G		7E-6		0.0821	[0.046-0.118] SD units decrease	NR [10700000] (imputed)	N
637	chr17	6900075	6900076	rs2073438	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	17p13.1	NR	rs2073438-G		2E-6		0.0898	[0.053-0.127] SD units decrease	NR [10700000] (imputed)	N
637	chr17	6906570	6906571	rs2440129	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p13.1	NR	rs2440129-?	NR	5E-6		0.0398	[0.023-0.057] unit increase	Illumina [at least 560000] (imputed)	N
637	chr17	6910987	6910988	rs434844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.1	AC027763.2, ALOX12, RP11-589P10.7	rs434844-C	0.596727	2E-9		0.013656482	[0.0092-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr17	6914769	6914770	rs11571354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.1	AC027763.2, RP11-589P10.7	rs11571354-T	0.069952	8E-9		0.025059381	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
637	chr17	6915400	6915401	rs2271316	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17p13.1	LOC100506713	rs2271316-C	0.470958	5E-21	(12-HETE)	0.208	[0.16-0.25] unit increase	Illumina [13039987] (imputed)	N
637	chr17	6915400	6915401	rs2271316	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17p13.1	ALOX12	rs2271316-C	0.38	2E-23	(X-12441--12-hydroxyeicosatetraenoate (12-HETE))	0.113	[0.091-0.135] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
637	chr17	6921668	6921669	rs78088233	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17p13.1	MIR497HG	rs78088233-?	NR	5E-13		0.04361876	[0.032-0.055] unit increase	Illumina [27896057] (imputed)	N
637	chr17	6925489	6925490	rs939653112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17p13.1		rs939653112-T	0.004367	1E-13		0.123718	[0.091-0.156] unit increase	Illumina [13479295] (imputed)	N
637	chr17	6932139	6932140	rs10521149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1	BCL6B	rs10521149-C	0.066161	6E-13		0.032571528	[0.024-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr17	6940392	6940393	rs312457	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	17p13.1	SLC16A13	rs312457-G	0.078	8E-13		1.2	[1.14-1.26]	Illumina [6209637] (imputed)	N
637	chr17	6945086	6945087	rs75493593	24390345	Williams AL	2013-12-25	Nature	Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.	Type 2 diabetes	3,848 Mexican and other Latin American ancestry cases, 4,366 Mexican and other Latin American ancestry controls	896 Mexican American cases, 832 Mexican American controls, 2,768 East Asian ancestry cases, 2,880 East Asian ancestry controls, 1,082 South Asian ancestry cases, 1,105 South Asian ancestry controls, 1,874 European ancestry cases, 1,333 European ancestry controls, 2,127 African American cases, 2,103 African American controls, 698 Native Hawaiian ancestry cases, 579 Native Hawaiian ancestry controls, 2,009 Singaporean ancestry cases, 1959 Singaporean ancestry controls	17p13.1	SLC16A13, SLC16A11	rs75493593-?	NR	5E-15		1.25	[1.18-1.32]	Illumina [9200000] (imputed)	N
637	chr17	6945482	6945483	rs75418188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17p13.1		rs75418188-T	NR	2E-17		0.1337	[0.1-0.16] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
637	chr17	6945482	6945483	rs75418188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17p13.1		rs75418188-T	0.078132097	9E-16		0.14677788	[0.11-0.18] unit increase	Illumina [13134967] (imputed)	N
637	chr17	6945482	6945483	rs75418188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17p13.1		rs75418188-T	NR	9E-16		0.1468	[0.11-0.18] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
637	chr17	6945482	6945483	rs75418188	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	17p13.1		rs75418188-T	0.076104258	6E-18		1.1413156	[1.107589097-1.176069036]	Illumina [8919992] (imputed)	N
637	chr17	6945482	6945483	rs75418188	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	17p13.1	SLC16A13	rs75418188-T	NR	8E-11	(Japanese)	1.1986958	[1.13497329407839-1.26599585766155]	Illumina [7521072] (imputed)	N
637	chr17	6945939	6945940	rs13342232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17p13.1		rs13342232-G	0.075594835	7E-19		0.15111704	[0.12-0.18] unit increase	Illumina [13429769] (imputed)	N
637	chr17	6945939	6945940	rs13342232	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	17p13.1	NR	rs13342232-G	0.0779	1E-15		0.1297	[0.098-0.161] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
637	chr17	6946356	6946357	rs75636181	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	17p13.1	NR	rs75636181-?	NR	4E-6		0.0344	[0.02-0.049] unit decrease	Illumina [at least 560000] (imputed)	N
637	chr17	6946558	6946559	rs35634464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs35634464-A	NR	1E-13		0.021	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	6947452	6947453	rs74577409	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	17p13.1	SLC16A11, A13	rs74577409-G	0.08	6E-16		1.14	1.11-1.18	Illumina [12557761] (imputed)	N
638	chr17	6951734	6951735	rs76484228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	17p13.1		rs76484228-G	0.090388	9E-10		0.0296949	[0.02-0.039] unit increase	Illumina [13479924] (imputed)	N
638	chr17	6953154	6953155	rs113748381	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	17p13.1	SLC16A11	rs113748381-A		4E-8		1.04	[NR]	Illumina [10000000] (imputed)	N
638	chr17	6953557	6953558	rs73239895	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.1	NR	rs73239895-C	0.914	3E-15		0.0869	[0.065-0.108] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
638	chr17	6953780	6953781	rs186568031	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	17p13.1	SLC16A11	rs186568031-T	0.094	9E-24		1.12	[1.10-1.15]	Affymetrix, Illumina [11800000] (imputed)	N
638	chr17	6961216	6961217	rs12950215	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17p13.1	CTD-2545G14.2	rs12950215-A	0.1508	9E-7		0.0443	[0.027-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
638	chr17	6968171	6968172	rs187345738	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	CLEC10A	rs187345738-G	0.992322	1E-300		0.056848	[0.054-0.06] unit decrease	Affymetrix [13995440] (imputed)	N
638	chr17	6974938	6974939	rs17732397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs17732397-C	NR	2E-10		0.0227	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	6974938	6974939	rs17732397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs17732397-C	NR	4E-64		0.0574	[0.051-0.064] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	6975138	6975139	rs12951743	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs12951743-G	NR	1E-17		0.0235	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	6980104	6980105	rs35318160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs35318160-A	NR	2E-20		0.0718	[0.057-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	6981402	6981403	rs78714016	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	17p13.1	CLEC10A	rs78714016-A	0.002	1E-6		0.436	[0.26-0.61] unit decrease	Illumina [at least 81396]	N
638	chr17	6982443	6982444	rs444207	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17p13.1	CLEC10A	rs444207-G	0.3184	2E-12	(CLEC10A)	0.38155	[0.27-0.49] unit increase	Illumina [8683751] (imputed)	N
638	chr17	6983528	6983529	rs11653290	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	17p13.1	CLEC10A	rs11653290-A	NR	4E-6		4.599	NR z score decrease	Illumina [7839440] (imputed)	N
638	chr17	6984134	6984135	rs314228	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17p13.1	NR	rs314228-?	NR	5E-6		0.877213	[0.5-1.25] unit increase	NR [13958389] (imputed)	N
638	chr17	6984836	6984837	rs2002664	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17p13.1	CLEC10A	rs2002664-T	0.1332	6E-14	(CLEC10A)	0.58775	[0.43-0.74] unit increase	Illumina [8683751] (imputed)	N
638	chr17	6987159	6987160	rs314224	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs314224-T	NR	4E-28		0.028	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	6987354	6987355	rs35755455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs35755455-C	NR	3E-19		0.0369	[0.029-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	6987840	6987841	rs78507937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17p13.1	Intergenic	rs78507937-T	0.982	6E-7	(AA)	0.298	NR unit increase	Illumina [NR] (imputed)	N
638	chr17	6989295	6989296	rs545779157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	17p13.1		rs545779157-C	0.992966	4E-8		0.142611	[0.092-0.193] unit increase	NR [11722792] (imputed)	N
638	chr17	6989295	6989296	rs545779157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	17p13.1		rs545779157-C	0.992965	9E-9		0.147616	[0.097-0.198] unit increase	NR [11722792] (imputed)	N
638	chr17	6989295	6989296	rs545779157	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	17p13.1		rs545779157-C	0.992966	3E-8		0.144313	[0.093-0.195] unit increase	NR [11722792] (imputed)	N
638	chr17	7003414	7003415	rs7212330	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	17p13.1	ASGR2	rs7212330-?	NR	2E-6		1.4171551	[1.23-1.64]	Illumina [at least 4756722] (imputed)	N
638	chr17	7003928	7003929	rs544187825	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs544187825-G	0.992908	2E-11		0.174958	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
638	chr17	7012253	7012254	rs146261845	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.1	ASGR2	rs146261845-T	0.0037	6E-22		0.3173	[0.25-0.38] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
638	chr17	7012253	7012254	rs146261845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	ASGR2	rs146261845-T	0.009	2E-22	(Scavenger receptor cysteine-rich type 1 protein M130, CD163.5028.59.1)	1.43	[1.14-1.72] unit increase	Affymetrix [10572788] (imputed)	N
638	chr17	7019048	7019049	rs3760353	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	ASGR2	rs3760353-G	0.944653	7E-15		0.00402916	[0.003-0.005] unit increase	Affymetrix [13995440] (imputed)	N
638	chr17	7020296	7020297	rs535064984	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	17p13.1	ASGR1	rs535064984-C	0.0058	4E-19		0.23	[0.18-0.28] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
638	chr17	7020296	7020297	rs535064984	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.1	intergenic	rs535064984-T	0.9964	7E-32		0.3813	[0.32-0.45] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
638	chr17	7034569	7034570	rs12941354	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17p13.1	RPL7AP64	rs12941354-T	0.042	2E-12	(CLEC10A)	0.99147	[0.72-1.27] unit increase	Illumina [8683751] (imputed)	N
638	chr17	7040456	7040457	rs314246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs314246-C	NR	8E-30		0.0358	[0.03-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	7040456	7040457	rs314246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs314246-C	NR	3E-9		0.0187	[0.012-0.025] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	7041538	7041539	rs72837670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p13.1		rs72837670-?	NR	3E-8				NR [~ 8900000] (imputed)	N
638	chr17	7042842	7042843	rs7207110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs7207110-A	NR	3E-9		0.0268	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	7042842	7042843	rs7207110	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p13.1	ASGR2	rs7207110-A	NR	7E-6	(G_Faecalitalea_HB)	0.594558	[0.34-0.85] unit increase	Illumina [7711310] (imputed)	N
638	chr17	7051254	7051255	rs117356834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117356834-A	NR	2E-11		0.06	[0.042-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	7051274	7051275	rs4464125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs4464125-A	NR	1E-53		0.0425	[0.037-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	7063554	7063555	rs12935952	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs12935952-C	NR	3E-18		0.0442	[0.034-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
638	chr17	7066023	7066024	rs4796373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs4796373-G	NR	7E-11		0.0261	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-11		0.188284	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993405	2E-11		0.177858	[0.13-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993406	5E-9		0.163461	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993404	3E-8		0.157401	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-10		0.17285	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-11		0.185324	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	8E-12		0.187357	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-8		0.151527	[0.099-0.204] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-11		0.181463	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-9		0.162114	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-10		0.17712	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-27		0.274033	[0.22-0.32] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-14		0.210731	[0.16-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-28		0.309836	[0.25-0.36] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-34		0.341898	[0.29-0.4] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-15		0.217773	[0.16-0.27] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-36		0.350799	[0.3-0.41] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-10		0.170126	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-24		0.281119	[0.23-0.34] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-22		0.237874	[0.19-0.29] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-9		0.159748	[0.11-0.21] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-28		0.307268	[0.25-0.36] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-20		0.256821	[0.2-0.31] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-13		0.201156	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-15		0.216887	[0.16-0.27] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993405	7E-50		0.382568	[0.33-0.43] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-11		0.185365	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-36		0.33861	[0.29-0.39] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993406	6E-9		0.158119	[0.1-0.21] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993404	2E-8		0.158094	[0.1-0.21] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-32		0.300182	[0.25-0.35] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-18		0.242606	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	8E-25		0.288035	[0.23-0.34] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-24		0.283548	[0.23-0.34] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-15		0.222456	[0.17-0.28] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	7E-40		0.371565	[0.32-0.43] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-10		0.174214	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-27		0.30191	[0.25-0.36] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-21		0.236274	[0.19-0.28] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-10		0.173129	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-31		0.326255	[0.27-0.38] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-27		0.300226	[0.25-0.35] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993405	6E-22		0.239498	[0.19-0.29] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993406	8E-17		0.231525	[0.18-0.29] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-14		0.196762	[0.15-0.25] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-22		0.254604	[0.2-0.31] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-19		0.251402	[0.2-0.31] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-29		0.316865	[0.26-0.37] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-14		0.216427	[0.16-0.27] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-34		0.341183	[0.29-0.4] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-12		0.189757	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-22		0.239908	[0.19-0.29] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-11		0.184456	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-25		0.285343	[0.23-0.34] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	8E-9		0.15521	[0.1-0.21] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-21		0.23814	[0.19-0.29] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-13		0.20176	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-16		0.227032	[0.17-0.28] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-49		0.41608	[0.36-0.47] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-16		0.230036	[0.18-0.28] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	8E-21		0.263166	[0.21-0.32] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-10		0.168559	[0.12-0.22] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-19		0.249118	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-20		0.228321	[0.18-0.28] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-11		0.182355	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	8E-20		0.25549	[0.2-0.31] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-14		0.20703	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	7E-27		0.299509	[0.24-0.35] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993405	7E-19		0.247888	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-9		0.164926	[0.11-0.22] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-18		0.242128	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-14		0.205704	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-20		0.230683	[0.18-0.28] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-18		0.242114	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-28		0.311055	[0.26-0.37] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-51		0.424124	[0.37-0.48] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-13		0.205722	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-33		0.338714	[0.28-0.39] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	7E-12		0.190119	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-23		0.276498	[0.22-0.33] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	5E-20		0.227531	[0.18-0.28] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-11		0.187399	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-27		0.301733	[0.25-0.36] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993405	1E-39		0.351531	[0.3-0.4] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-22		0.274642	[0.22-0.33] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-9		0.151683	[0.1-0.203] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	3E-10		0.173298	[0.12-0.23] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-20		0.236231	[0.19-0.29] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-19		0.247785	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-30		0.321499	[0.27-0.38] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	6E-47		0.403419	[0.35-0.46] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-14		0.216624	[0.16-0.27] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-34		0.345388	[0.29-0.4] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	4E-12		0.190388	[0.14-0.24] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-22		0.271859	[0.22-0.33] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	1E-20		0.230812	[0.18-0.28] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-8		0.148167	[0.097-0.199] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	9E-43		0.340619	[0.29-0.39] unit decrease	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	17p13.1		rs186021206-G	0.993407	2E-18		0.245632	[0.19-0.3] unit increase	NR [11722792] (imputed)	N
638	chr17	7069411	7069412	rs186021206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17p13.1		rs186021206-A	NR	3E-47		0.2263	[0.2-0.26] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
638	chr17	7069411	7069412	rs186021206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17p13.1		rs186021206-A	NR	5E-1068		1.0952	[1.06-1.13] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
638	chr17	7069411	7069412	rs186021206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p13.1		rs186021206-A	NR	5E-27		0.179	[0.15-0.21] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
638	chr17	7069411	7069412	rs186021206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17p13.1		rs186021206-A	NR	2E-65		0.272	[0.24-0.3] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
638	chr17	7069411	7069412	rs186021206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17p13.1		rs186021206-A	NR	3E-16		0.133	[0.1-0.16] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
638	chr17	7069411	7069412	rs186021206	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	17p13.1		rs186021206-A	0.0088	2E-16		0.6234	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
638	chr17	7069411	7069412	rs186021206	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	17p13.1	intergenic	rs186021206-A	0.004	7E-89		0.63	[0.57-0.69] unit increase	Illumina [NR] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-10		0.0312511	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-12		0.0347865	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-12		0.0346184	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	7E-10		0.0298655	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	8E-11		0.0317166	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-8		0.0273667	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686789	2E-14		0.0345342	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	6E-9		0.0285668	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	3E-9		0.0260808	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-9		0.0297196	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	4E-10		0.0302809	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	4E-14		0.0371681	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-10		0.0309197	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-11		0.0331631	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	3E-10		0.0308074	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-10		0.0311461	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	5E-12		0.0338318	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-8		0.0269312	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-9		0.0294593	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	4E-16		0.039871	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	6E-10		0.0301901	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	5E-10		0.0304989	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	3E-15		0.0388641	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	3E-11		0.032558	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-9		0.0294246	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	3E-10		0.0309054	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686789	4E-10		0.0291224	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	1E-10		0.0314815	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	6E-15		0.038196	[0.029-0.048] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	9E-12		0.03351	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	2E-9		0.0289362	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
638	chr17	7070861	7070862	rs116403919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs116403919-G	0.686776	5E-10		0.0269212	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
638	chr17	7073746	7073747	rs72837687	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	17p13.1	ASGR1	rs72837687-A	0.199899	3E-10		0.044388387	[0.031-0.058] unit decrease	Affymetrix [7288503] (imputed)	N
638	chr17	7074060	7074061	rs28733475	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs28733475-C	0.763085	3E-11		0.0315735	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
638	chr17	7077028	7077029	rs1014248165	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	17p13.1		rs1014248165-?	NR	5E-28		1.16035	[0.95-1.37] unit increase	NR [9800000] (imputed)	N
638	chr17	7077062	7077063	rs201887173	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	17p13.1		rs201887173-?	NR	6E-11		0.503282	[0.36-0.64] unit decrease	NR [9800000] (imputed)	N
638	chr17	7077096	7077097	rs144566170	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	17p13.1		rs144566170-?	NR	6E-19		1.60937	[1.24-1.98] unit increase	NR [9800000] (imputed)	N
638	chr17	7077096	7077097	rs144566170	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	17p13.1		rs144566170-?	NR	3E-11		1.31839	[0.92-1.71] unit decrease	NR [9800000] (imputed)	N
638	chr17	7077121	7077122	rs200584799	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	17p13.1		rs200584799-?	NR	7E-17		1.26962	[0.96-1.58] unit increase	NR [9800000] (imputed)	N
638	chr17	7077719	7077720	rs751321763	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	17p13.1		rs751321763-?	NR	4E-28		1.50879	[1.23-1.78] unit increase	NR [9800000] (imputed)	N
638	chr17	7077780	7077781	rs775719539	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	17p13.1		rs775719539-?	NR	9E-20		0.923133	[0.71-1.14] unit increase	NR [9800000] (imputed)	N
639	chr17	7079592	7079593	rs111072793	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	17p13.1		rs111072793-A	0.2	2E-15		0.0923	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
639	chr17	7080068	7080069	rs12945299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17p13.1		rs12945299-G	NR	9E-10		0.0432	[0.029-0.057] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
639	chr17	7080068	7080069	rs12945299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs12945299-A	NR	5E-9		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080068	7080069	rs12945299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs12945299-A	0.817	2E-8	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080068	7080069	rs12945299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs12945299-A	NR	1E-11		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080068	7080069	rs12945299	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs12945299-A	0.817	1E-10	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080255	7080261	rs754165241	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17p13.1	ASGR1	rs754165241-?		1E-26		0.5085	[0.42-0.6] unit decrease	Illumina [31500000] (imputed)	N
639	chr17	7080255	7080261	rs754165241	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17p13.1	ASGR1	rs754165241-?		3E-146		1.4136	[1.31-1.52] unit increase	Illumina [31500000] (imputed)	N
639	chr17	7080255	7080261	rs754165241	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17p13.1	ASGR1	rs754165241-?		5E-31		0.5426	[0.45-0.63] unit decrease	Illumina [31500000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD163	5,368 Icelandic ancestry individuals	NA	17p13.1		rs55714927-T	0.2159	6E-29		0.255623	[0.21-0.3] unit increase	Illumina [7506463] (imputed)	N
639	chr17	7080315	7080316	rs55714927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	17p13.1		rs55714927-T	0.288561	6E-74		0.0884273	[0.079-0.098] unit increase	Illumina [13474352] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	ASGR1	rs55714927-C	0.80928	1E-300		0.0127645	[0.012-0.013] unit decrease	Affymetrix [13995440] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	9E-39		0.0398	[0.034-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	2E-9		0.0192	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	8E-57		0.051	[0.045-0.057] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	5E-292		0.1113	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	3E-12		0.0224	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	9E-46		0.0434	[0.037-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-T	NR	2E-53		0.0471	[0.041-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7080315	7080316	rs55714927	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17p13.1	ASGR1	rs55714927-C	0.809638	4E-23		0.0263355	[0.021-0.032] unit increase	Affymetrix [NR] (imputed)	N
639	chr17	7080315	7080316	rs55714927	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17p13.1	ASGR1	rs55714927-C	0.809665	1E-33		0.0320541	[0.027-0.037] unit increase	Affymetrix [NR] (imputed)	N
639	chr17	7080315	7080316	rs55714927	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17p13.1	ASGR1	rs55714927-?	NR	7E-37		0.0412	[0.036-0.047] unit decrease	Affymetrix [5701386] (imputed)	N
639	chr17	7080315	7080316	rs55714927	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	17p13.1	ASGR1	rs55714927-T	0.21	3E-48		0.07	[0.06-0.09] unit increase	Illumina [NR] (imputed)	N
639	chr17	7080315	7080316	rs55714927	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	NR	rs55714927-T	0.185	3E-14	(Scavenger receptor cysteine-rich type 1 protein M130, CD163.5028.59.1)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
639	chr17	7080315	7080316	rs55714927	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-C	NR	5E-9		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080315	7080316	rs55714927	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-C	0.821	2E-8	(EA)	0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080315	7080316	rs55714927	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-C	NR	4E-11		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080315	7080316	rs55714927	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs55714927-C	0.821	2E-10	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7080315	7080316	rs55714927	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	17p13.1	DLG4	rs55714927-C	0.78	9E-12		0.058	[0.04-0.076] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
639	chr17	7080315	7080316	rs55714927	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	17p13.1	DLG4	rs55714927-C	0.78	7E-12		0.057	[0.041-0.073] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
639	chr17	7088422	7088423	rs72837690	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17p13.1	ASGR1, DLG4	rs72837690-C	0.35	3E-192		29.6	z-score increase	Affymetrix [4311822] (imputed)	N
639	chr17	7088422	7088423	rs72837690	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p13.1	NR	rs72837690-T	0.651119	5E-9		0.0121717	[0.0081-0.0163] unit decrease	NR [NR]	N
639	chr17	7088422	7088423	rs72837690	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	17p13.1	ASGR1, DLG4	rs72837690-?	NR	4E-33		0.05381	[0.045-0.063] unit increase novel	Illumina [6108953] (imputed)	N
639	chr17	7091649	7091650	rs314253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs314253-T	NR	1E-6		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7091649	7091650	rs314253	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17p13.1	NR	rs314253-T	0.662	6E-6	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
639	chr17	7091649	7091650	rs314253	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	17p13.1	DLG4	rs314253-T	0.665	4E-10	(Trans-ethnic initial)	0.0242	[0.017-0.032] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
639	chr17	7091649	7091650	rs314253	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17p13.1	DLG4	rs314253-C	0.37	3E-10		0.024	[NR] unit decrease	NR [NR] (imputed)	N
639	chr17	7091649	7091650	rs314253	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	17p13.1	DLG4	rs314253-C	0.37	3E-10		0.023	[NR] unit decrease	NR [NR] (imputed)	N
639	chr17	7091649	7091650	rs314253	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	17p13.1	ASGR1, DLG4	rs314253-C	0.33	8E-12		2.1	[1.50-2.80] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
639	chr17	7093465	7093466	rs13331	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs13331-?	NR	4E-8				NR [~ 8900000] (imputed)	N
639	chr17	7095197	7095198	rs314251	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	17p13.1	DVL2	rs314251-A	0.851	3E-9	(C12)	0.1817	[0.12-0.24] unit increase	Illumina [~ 47000000] (imputed)	N
639	chr17	7095197	7095198	rs314251	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	17p13.1	DVL2	rs314251-A	0.8506	4E-8	(C14:2)	0.171	[0.11-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
639	chr17	7095506	7095507	rs2242449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs2242449-T	NR	7E-16		0.0217	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7095506	7095507	rs2242449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs2242449-T	NR	4E-63		0.0428	[0.038-0.048] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7095506	7095507	rs2242449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p13.1	NR	rs2242449-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
639	chr17	7095506	7095507	rs2242449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.1		rs2242449-?	NR	6E-9				NR [~ 8900000] (imputed)	N
639	chr17	7096707	7096708	rs3215125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17p13.1		rs3215125-T	NR	6E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	1E-11		0.205776	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	4E-11		0.197696	[0.14-0.26] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	3E-12		0.210883	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	1E-14		0.229827	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-11		0.194815	[0.14-0.25] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	5E-14		0.225548	[0.17-0.28] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-16		0.254978	[0.19-0.32] unit decrease	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	3E-23		0.300804	[0.24-0.36] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	4E-20		0.279447	[0.22-0.34] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-10		0.18986	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-8		0.162613	[0.11-0.22] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-9		0.179782	[0.12-0.24] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-12		0.209657	[0.15-0.27] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	8E-14		0.22695	[0.17-0.29] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	2E-8		0.170109	[0.11-0.23] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994772	6E-12		0.205705	[0.15-0.26] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17p13.1		rs200489612-G	0.994771	1E-9		0.186317	[0.13-0.25] unit increase	NR [11722792] (imputed)	N
639	chr17	7106377	7106378	rs200489612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17p13.1		rs200489612-A	NR	8E-17		0.1435	[0.11-0.18] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
639	chr17	7106377	7106378	rs200489612	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	DLG4	rs200489612-G	0.994771	1E-300		0.134758	[0.13-0.14] unit decrease	Affymetrix [13995440] (imputed)	N
639	chr17	7106377	7106378	rs200489612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p13.1	DLG4	rs200489612-A	0.00527299999999997	1E-14		0.12670974	[0.094-0.159] unit increase	Affymetrix [93095623] (imputed)	N
639	chr17	7106377	7106378	rs200489612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p13.1	DLG4	rs200489612-A	0.00526800000000005	3E-14		0.12552394	[0.093-0.158] unit increase	Affymetrix [93095623] (imputed)	N
639	chr17	7106377	7106378	rs200489612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs200489612-G	0.994793	6E-12				Affymetrix, Illumina [24558453] (imputed)	N
639	chr17	7110464	7110465	rs222855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs222855-C	NR	5E-15		0.0221	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7110464	7110465	rs222855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs222855-C	NR	5E-26		0.0284	[0.023-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7110464	7110465	rs222855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs222855-C	NR	4E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7118321	7118322	rs507506	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	17p13.1	NR	rs507506-G	NR	2E-6		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	5E-12		0.0279	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	1E-11		0.0287	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	1E-44		0.0595	[0.051-0.068] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	7E-133		0.0992	[0.091-0.107] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	2E-14		0.0311	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7124505	7124506	rs77680021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs77680021-A	NR	8E-20		0.037	[0.029-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7127717	7127718	rs17671352	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	17p13.1	ACADVL	rs17671352-T	38.4	9E-9	(additive)	1.03	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
639	chr17	7128726	7128727	rs1054280	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	17p13.1	DVL2	rs1054280-T	0.154	2E-10	(C14:1)	0.1799	[0.12-0.24] unit decrease	Illumina [~ 47000000] (imputed)	N
639	chr17	7129897	7129898	rs72839768	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p13.1		rs72839768-A	0.03	2E-24		10.21	z score increase	Affymetrix [9061022] (imputed)	N
639	chr17	7129897	7129898	rs72839768	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	17p13.1		rs72839768-?	NR	3E-9				NR [9705931] (imputed)	N
639	chr17	7129897	7129898	rs72839768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17p13.1	NR	rs72839768-A	NR	7E-11		0.0512	[0.036-0.066] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7129897	7129898	rs72839768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17p13.1	NR	rs72839768-A	NR	1E-13		0.0582	[0.043-0.074] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7129897	7129898	rs72839768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	17p13.1	NR	rs72839768-A	NR	1E-13		0.0583	[0.043-0.074] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7132191	7132192	rs72839770	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	17p13.1	NR	rs72839770-T	0.36	4E-6		1.31	[1.19-1.43]	NR [up to 6398204] (imputed)	N
639	chr17	7132555	7132556	rs222837	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.1	ACADVL	rs222837-?	NR	7E-6	(histidine)	0.20187464	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
639	chr17	7140605	7140606	rs222852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17p13.1		rs222852-G	NR	2E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
639	chr17	7140605	7140606	rs222852	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	17p13.1	NR	rs222852-A	0.59	2E-13		0.028664349	[0.021-0.036] unit increase	NR [1977400] (imputed)	N
639	chr17	7140605	7140606	rs222852	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	17p13.1	NR	rs222852-A	0.535	9E-9		0.035507735	[0.023-0.048] unit increase	NR [1977400] (imputed)	N
639	chr17	7140605	7140606	rs222852	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	17p13.1	NR	rs222852-A	0.44	3E-14		0.025	[0.019-0.031] z score increase	Affymetrix [up to 10400000] (imputed)	N
639	chr17	7141139	7141140	rs77234976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p13.1		rs77234976-G	NR	4E-13		0.0227	[0.017-0.029] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
639	chr17	7141139	7141140	rs77234976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p13.1	PHF23	rs77234976-G	0.145126	9E-12		0.021427225	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
639	chr17	7141139	7141140	rs77234976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p13.1	PHF23	rs77234976-G	0.145119	5E-19		0.02798415	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr17	7141139	7141140	rs77234976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.1	PHF23	rs77234976-G	0.145119	2E-17		0.02707576	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
639	chr17	7141139	7141140	rs77234976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs77234976-G	0.137068	3E-18				Affymetrix, Illumina [23472807] (imputed)	N
639	chr17	7141139	7141140	rs77234976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17p13.1	NR	rs77234976-G	0.145961	1E-18		0.023837	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
639	chr17	7141139	7141140	rs77234976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.1		rs77234976-?	NR	3E-9				NR [~ 8900000] (imputed)	N
639	chr17	7141139	7141140	rs77234976	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p13.1	NR	rs77234976-?	NR	1E-7		0.0614	[0.039-0.084] unit decrease	Illumina [at least 560000] (imputed)	N
639	chr17	7142850	7142851	rs117616209	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	17p13.1	SLC2A4	rs117616209-?	NR	3E-14	(Fischer's ratio)	0.51	[0.37-0.65] unit decrease	Illumina [~ 7700000] (imputed)	N
639	chr17	7143993	7143994	rs17710	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	GABARAP	rs17710-A	0.86133	1E-87		0.00656158	[0.0059-0.0072] unit increase	Affymetrix [13995440] (imputed)	N
639	chr17	7145116	7145117	rs11656323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs11656323-C	NR	2E-26		0.0618	[0.05-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7145116	7145117	rs11656323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs11656323-C	NR	3E-12		0.0385	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7155860	7155861	rs2521988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs2521988-A	NR	4E-62		0.0572	[0.051-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7163349	7163350	rs1215	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.1	CLDN7	rs1215-A	0.8567	1E-10		0.0217	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
639	chr17	7163349	7163350	rs1215	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.1	CLDN7	rs1215-A	0.8567	2E-7		0.0174	[0.011-0.024] unit increase	Affymetrix [19819130] (imputed)	N
639	chr17	7164562	7164563	rs222857	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17p13.1	CLDN7, SLC2A4	rs222857-T	0.575405	1E-24		0.026478	[0.021-0.032] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
639	chr17	7166659	7166660	rs77549883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs77549883-T	NR	1E-15		0.031	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7166659	7166660	rs77549883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p13.1		rs77549883-?	NR	5E-8				NR [~ 8900000] (imputed)	N
639	chr17	7167775	7167776	rs57508443	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p13.1	NR	rs57508443-?	NR	2E-7		0.0088757	[0.0055-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
639	chr17	7171355	7171356	rs113086489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	17p13.1		rs113086489-T	NR	5E-10		0.0499	[0.034-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
639	chr17	7171355	7171356	rs113086489	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	17p13.1	CLDN7	rs113086489-T	0.55	1E-15		0.0296	[0.022-0.037] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
639	chr17	7173278	7173279	rs12449427	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	17p13.1		rs12449427-C	0.25	6E-11		0.0645	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
639	chr17	7175843	7175844	rs62059189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs62059189-T	NR	1E-9		0.0258	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr17	7175843	7175844	rs62059189	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17p13.1	CLDN7	rs62059189-T	NR	3E-6		1.0752687	NR	Affymetrix, Illumina [8278136] (imputed)	N
639	chr17	7177871	7177872	rs2654189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.1		rs2654189-A	0.673762	6E-12		0.016243285	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
639	chr17	7177871	7177872	rs2654189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.1		rs2654189-A	0.673794	4E-11		0.015572379	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
639	chr17	7177871	7177872	rs2654189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.1		rs2654189-?	NR	1E-9				NR [~ 8900000] (imputed)	N
639	chr17	7180273	7180274	rs2428362	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	SLC2A4	rs2428362-T	0.5357	7E-12		0.2407	[0.17-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
639	chr17	7183521	7183522	rs5409	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs5409-T	NR	5E-18		0.0365	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
639	chr17	7184480	7184481	rs5415	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	17p13.1	SLC2A4	rs5415-T	0.31	5E-6		0.034	[0.020-0.048] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
639	chr17	7185061	7185062	rs5417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17p13.1		rs5417-A	NR	2E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
639	chr17	7185061	7185062	rs5417	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	17p13.1	SLC2A4	rs5417-C	0.426897	8E-11		0.051768024	[0.036-0.067] unit decrease	Affymetrix [7288503] (imputed)	N
639	chr17	7185061	7185062	rs5417	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17p13.1	TP53, SLC2A4	rs5417-A	0.57	1E-13		0.207	[0.15-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
639	chr17	7185091	7185092	rs5418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.1		rs5418-?	NR	7E-19				NR [~ 8900000] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974143	3E-42		0.173468	[0.15-0.2] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974147	1E-31		0.148514	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974136	6E-21		0.117926	[0.093-0.143] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974132	7E-15		0.100079	[0.075-0.125] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974132	4E-15		0.10257	[0.077-0.128] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	17p13.1		rs117643180-C	0.974192	2E-10		0.0823219	[0.057-0.108] unit increase	NR [11722792] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial valine	4,348 individuals	NA	17p13.1		rs117643180-A	0.026158119	3E-8		0.378947	[0.25-0.51] mmol/l decrease	Illumina [7701709] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting valine	4,734 individuals	NA	17p13.1		rs117643180-A	0.025593512	6E-11		0.431151	[0.3-0.56] mmol/l decrease	Illumina [7701709] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17p13.1		rs117643180-A	NR	2E-10		0.0355	[0.025-0.046] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17p13.1		rs117643180-A	NR	2E-13		0.0487	[0.036-0.062] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17p13.1		rs117643180-A	NR	3E-17		0.0561	[0.043-0.069] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17p13.1		rs117643180-A	NR	5E-20		0.0594	[0.047-0.072] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	17p13.1	SLC2A4	rs117643180-?	NR	9E-16		0.0062	[0.0044-0.008] unit increase	Affymetrix [21347608] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	17p13.1	SLC2A4	rs117643180-?	NR	1E-21		0.0117	[0.009-0.0144] unit increase	Affymetrix [21347608] (imputed)	N
639	chr17	7185778	7185779	rs117643180	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	17p13.1	SLC2A4	rs117643180-A	0.0255	7E-14		0.234	[0.17-0.3] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
639	chr17	7185778	7185779	rs117643180	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	17p13.1	SLC2A4	rs117643180-C	0.974195	4E-18		0.0107023	[0.0083-0.0131] unit decrease	Affymetrix [13995440] (imputed)	N
639	chr17	7185778	7185779	rs117643180	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17p13.1	SLC2A4	rs117643180-A	0.026	2E-11		6.71	z-score increase	Affymetrix [4314223] (imputed)	N
639	chr17	7185778	7185779	rs117643180	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17p13.1	SLC2A4	rs117643180-A	0.026	2E-12		7.03	z-score increase	Affymetrix [4312306] (imputed)	N
639	chr17	7190436	7190437	rs560238897	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17p13.1	SLC2A4	rs560238897-T	0.493038	1E-10		0.0149639	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
639	chr17	7201331	7201331	rs57275132	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17p13.1	NR	rs57275132-CCGAGGTGGGCGGATCA	0.6241	9E-6	(EA)	0.0311	[0.017-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
639	chr17	7204973	7204974	rs12949545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p13.1	Intergenic	rs12949545-T	0.5319	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
639	chr17	7206688	7206689	rs111417555	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	EIF5A	rs111417555-G	0.975534	1E-32		0.00910778	[0.0076-0.0106] unit decrease	Affymetrix [13995440] (imputed)	N
639	chr17	7207886	7207887	rs12450494	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	17p13.1	EIF5A	rs12450494-A	NR	1E-7		1.06	[1.03-1.08]	Affymetrix, Illumina [12923718] (imputed)	N
639	chr17	7207886	7207887	rs12450494	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	17p13.1	NR	rs12450494-?	NR	2E-8		0.0567	[0.037-0.077] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
640	chr17	7213578	7213579	rs73977632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs73977632-G	NR	1E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7213578	7213579	rs73977632	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs73977632-G	NR	2E-9		0.0255	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7217098	7217099	rs78173576	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	GPS2	rs78173576-T	0.963656	1E-80		0.0115587	[0.01-0.013] unit decrease	Affymetrix [13995440] (imputed)	N
640	chr17	7217098	7217099	rs78173576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs78173576-G	NR	5E-14		0.051	[0.038-0.064] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7217098	7217099	rs78173576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs78173576-G	NR	8E-51		0.0966	[0.084-0.109] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7217098	7217099	rs78173576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17p13.1	NR	rs78173576-G	NR	3E-10		0.0407	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7217098	7217099	rs78173576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs78173576-G	NR	6E-12		0.0445	[0.032-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7223171	7223172	rs4796403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.1	Intergenic	rs4796403-A	0.5279	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
640	chr17	7224920	7224921	rs3809813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs3809813-G	NR	2E-15		0.0284	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7226956	7226957	rs35776863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	17p13.1		rs35776863-A	NR	7E-16		0.088	[0.067-0.109] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
640	chr17	7226956	7226957	rs35776863	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	17p13.1	RP11-542C16.2	rs35776863-A	0.229451	6E-16		0.08857987	[0.067-0.11] unit increase	Affymetrix [7288503] (imputed)	N
640	chr17	7226956	7226957	rs35776863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	17p13.1		rs35776863-?	NR	1E-12				NR [~ 8900000] (imputed)	N
640	chr17	7231791	7231792	rs9905997	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.1	NEURL4	rs9905997-A	0.5457	7E-10		0.0117	[0.008-0.0154] unit decrease	Affymetrix [18391927] (imputed)	N
640	chr17	7233099	7233100	rs72840916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs72840916-A	NR	8E-13		0.0543	[0.039-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7234111	7234112	rs3809822	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17p13.1	AC026954.6	rs3809822-G	0.2438	2E-10		0.0264869	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
640	chr17	7234111	7234112	rs3809822	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17p13.1	AC026954.6	rs3809822-G	0.2437	1E-10		0.02659254	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
640	chr17	7234982	7234983	rs9899849	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	17p13.1	NEURL4, ACAP1	rs9899849-A	NR	1E-8		1.209	[1.14-1.27]	NR [NR] (imputed)	N
640	chr17	7235315	7235316	rs8081264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p13.1	AC026954.6	rs8081264-C	0.244201	1E-13		0.019292692	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
640	chr17	7237345	7237346	rs2047803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs2047803-?	NR	4E-15				NR [~ 8900000] (imputed)	N
640	chr17	7240390	7240391	rs61759532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	17p13.1		rs61759532-T	NR	1E-13		0.0905	[0.067-0.114] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
640	chr17	7240390	7240391	rs61759532	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	17p13.1	NEURL4	rs61759532-T	0.234556	2E-10		0.11837882	[0.082-0.155] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
640	chr17	7240390	7240391	rs61759532	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	17p13.1	ACAP1	rs61759532-T	0.076	3E-11		1.235	[1.17-1.3]	Illumina [11270530] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.1	ACAP1	rs61759532-T	0.246902	1E-20		0.024395779	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.1	ACAP1	rs61759532-T	0.246951	7E-18		0.022716338	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.1	ACAP1	rs61759532-T	0.246925	5E-16		0.021415481	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs61759532-T	0.197914	8E-28				Affymetrix, Illumina [24649327] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p13.1	NR	rs61759532-T	0.240077	8E-30		0.025676	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs61759532-T	0.212491	3E-20				Affymetrix, Illumina [23114412] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p13.1	NR	rs61759532-T	0.242141	7E-23		0.023159	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
640	chr17	7240390	7240391	rs61759532	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	17p13.1	ACAP1	rs61759532-T	0.238	1E-15		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
640	chr17	7240390	7240391	rs61759532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.1		rs61759532-?	NR	4E-17				NR [~ 8900000] (imputed)	N
640	chr17	7240390	7240391	rs61759532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	17p13.1		rs61759532-?	NR	4E-14				NR [~ 8900000] (imputed)	N
640	chr17	7245673	7245674	rs8069505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs8069505-A	NR	3E-22		0.0246	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7251838	7251839	rs113342378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs113342378-A	NR	1E-14		0.0647	[0.048-0.081] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7251838	7251839	rs113342378	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs113342378-A	NR	6E-12		0.0547	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7264026	7264027	rs56360822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs56360822-A	NR	2E-66		0.0579	[0.051-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7285722	7285723	rs34768933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs34768933-C	NR	9E-80		0.077	[0.069-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7293714	7293715	rs3744549	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs3744549-T	NR	1E-11		0.0238	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7293714	7293715	rs3744549	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs3744549-T	NR	3E-45		0.0496	[0.043-0.056] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7303807	7303808	rs150452493	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs150452493-C	0.89984375	5E-10	(NLGN2, 9772_153_3)	0.2521888	[0.17-0.33] unit increase	Illumina [> 1000000] (imputed)	N
640	chr17	7303807	7303808	rs150452493	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs150452493-C	0.89984375	3E-12	(TNFSF12, 5939_42_3)	0.28448135	[0.2-0.36] unit increase	Illumina [> 1000000] (imputed)	N
640	chr17	7307073	7307074	rs71370494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs71370494-C	NR	1E-17		0.0241	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7307390	7307391	rs139552861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs139552861-G	NR	3E-18		0.1499	[0.12-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7307949	7307950	rs114576150	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NLGN2	5,362 Icelandic ancestry individuals	NA	17p13.1		rs114576150-G	0.1063	3E-14		0.229291	[0.17-0.29] unit decrease	Illumina [7506463] (imputed)	N
640	chr17	7310005	7310006	rs35386490	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs35386490-C	NR	7E-52		0.0452	[0.039-0.051] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7310005	7310006	rs35386490	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs35386490-C	NR	1E-307		0.1118	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7310005	7310006	rs35386490	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs35386490-C	NR	6E-20		0.026	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
640	chr17	7310753	7310754	rs77554485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs77554485-G	NR	1E-31		0.0807	[0.067-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7312248	7312249	rs72842813	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	17p13.1	NLGN2	rs72842813-A	0.04483	2E-10		1.23	[1.15-1.3]	Affymetrix, Illumina [43421991] (imputed)	N
640	chr17	7322086	7322087	rs76749877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs76749877-A	NR	6E-18		0.0395	[0.03-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7322086	7322087	rs76749877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs76749877-A	NR	2E-109		0.1017	[0.093-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7322460	7322461	rs9900691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	NLGN2	rs9900691-G	NR	2E-8		0.0174849	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
640	chr17	7323979	7323980	rs199795512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs199795512-C	NR	1E-9		0.1957	[0.13-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr17	7327088	7327089	rs77519307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.1	RP11-104H15.7	rs77519307-A	0.039679	5E-9		0.033374675	[0.022-0.045] unit increase	Affymetrix [93095623] (imputed)	N
640	chr17	7327088	7327089	rs77519307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.1		rs77519307-?	NR	2E-11				NR [~ 8900000] (imputed)	N
640	chr17	7328820	7328821	rs72842819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	RP11-104H15.7	rs72842819-C	NR	5E-13		0.0314216	[0.023-0.04] unit increase	Affymetrix [321114] (imputed)	N
640	chr17	7328820	7328821	rs72842819	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17p13.1	C17orf74, SPEM2	rs72842819-C	0.12	2E-9				NR [> 9500000] (imputed)	N
640	chr17	7328820	7328821	rs72842819	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17p13.1	C17orf74/SPEM2	rs72842819-C	0.11639500000000003	3E-9		1.0573143	1.03798991345177-1.07699840729814]	NR [9572556] (imputed)	N
640	chr17	7331696	7331696	rs34706172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p13.1	RP11-104H15.7	rs34706172-C	NR	2E-10		0.0221574	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
640	chr17	7336370	7336371	rs12946520	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs12946520-G	0.35	7E-106		1.3	NR	NR [8853336] (imputed)	N
640	chr17	7337514	7337515	rs67232264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	RP11-104H15.7	rs67232264-A	NR	5E-12		0.0250444	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
640	chr17	7337852	7337853	rs60856990	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17p13.1		rs60856990-A	NR	1E-8		0.019078061	[0.012-0.026] years increase	NR [7400000] (imputed)	N
641	chr17	7342147	7342148	rs4151120	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p13.1	NR	rs4151120-A	0.370605	8E-10		0.0197838	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
641	chr17	7343539	7343540	rs35695070	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs35695070-G	0.508	2E-11	(men)	0.0734806	[0.052-0.095] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7351478	7351479	rs12451961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17p13.1		rs12451961-G	NR	3E-9		0.0649	[0.044-0.086] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
641	chr17	7352732	7352733	rs150466968	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	17p13.1	CHRNB1	rs150466968-A	NR	1E-6		0.6091484	[0.38-0.84] unit decrease	NR [> 6200000] (imputed)	N
641	chr17	7355368	7355369	rs34730991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	CHRNB1	rs34730991-T	NR	4E-9		0.0173355	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
641	chr17	7355620	7355621	rs12600861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17p13.1	CHRNB1	rs12600861-C	NR	3E-8		0.0179212	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7355620	7355621	rs12600861	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17p13.1	CHRNB1	rs12600861-A	0.6484	1E-8		0.0565	[0.037-0.076] unit decrease	NR [7784415] (imputed)	N
641	chr17	7360109	7360110	rs2302764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs2302764-C	NR	2E-9		0.0207	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7360109	7360110	rs2302764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs2302764-C	NR	6E-13		0.0247	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7362358	7362359	rs17732878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p13.1		rs17732878-T	0.7912	4E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
641	chr17	7363087	7363088	rs9217	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17p13.1	NLGN2, SPEM1, TMEM102, FGF11, CHRNB1, ZBTB4, SLC35G6, POLR2A, TNFSF12, TNFSF12-TNFSF13, SENP3, SENP3-EIF4A1, CD68, MPDU1, FXR2, SHBG, ATP1B2, CHD3, KCNAB3, CNTROB, GUCY2D	rs9217-?		3E-22				Affymetrix, Illumina [NR] (imputed)	N
641	chr17	7363087	7363088	rs9217	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p13.1	Intergenic	rs9217-T	0.6464	4E-9	(MTAG)	0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
641	chr17	7363087	7363088	rs9217	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17p13.1	ZBTB4	rs9217-T	0.63	5E-20		0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
641	chr17	7366618	7366619	rs34914463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.1	ZBTB4	rs34914463-T	0.8687	1E-39		0.0361	[0.031-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
641	chr17	7366618	7366619	rs34914463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	17p13.1	ZBTB4	rs34914463-T	0.869	2E-20		0.03	[0.022-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
641	chr17	7366618	7366619	rs34914463	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	17p13.1	ZBTB4	rs34914463-T	0.869	5E-21		0.04	[0.032-0.048] unit decrease	Affymetrix [18391927] (imputed)	N
641	chr17	7366618	7366619	rs34914463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p13.1	ZBTB4	rs34914463-C	0.131133	5E-14		0.024771726	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
641	chr17	7366618	7366619	rs34914463	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p13.1	ZBTB4	rs34914463-C		4E-14		0.025	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
641	chr17	7366618	7366619	rs34914463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs34914463-?	NR	3E-15				NR [~ 8900000] (imputed)	N
641	chr17	7366618	7366619	rs34914463	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs34914463-?	NR	1E-12		0.0214621	[0.015-0.028] unit increase	Affymetrix [20259828] (imputed)	N
641	chr17	7371267	7371268	rs72827503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.1		rs72827503-?	NR	4E-16				NR [~ 8900000] (imputed)	N
641	chr17	7371267	7371268	rs72827503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.1	Intergenic	rs72827503-T	0.21	2E-8	(MTAG)	0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr17	7371931	7371932	rs55749333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.1	NR	rs55749333-?	NR	6E-24				Affymetrix [~ 8270000] (imputed)	N
641	chr17	7371931	7371932	rs55749333	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17p13.1	ZBTB4	rs55749333-?	NR	9E-12		0.021325959	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
641	chr17	7371931	7371932	rs55749333	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.1	ZBTB4, SLC35G6	rs55749333-?		8E-6				Illumina [4322238] (imputed)	N
641	chr17	7371931	7371932	rs55749333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs55749333-?	NR	3E-91				NR [~ 8900000] (imputed)	N
641	chr17	7372636	7372637	rs12942267	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17p13.1	ZBTB4	rs12942267-T	0.638953586153031	3E-8		0.0031127	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
641	chr17	7376410	7376411	rs7209131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p13.1		rs7209131-T	NR	1E-58		0.0277	[0.024-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
641	chr17	7377552	7377552	rs67462449	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs67462449-CTTT	0.635	1E-8	(men)	0.067072	[0.044-0.09] unit decrease	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7377992	7377993	rs12451900	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	17p13.1	ZBTB4	rs12451900-T	0.2346	8E-6	(Japanese)	0.021	[0.012-0.03] unit increase	Illumina [1986983] (imputed)	N
641	chr17	7379775	7379776	rs3867595	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs3867595-C	0.017	1E-8	(men)	0.241832	[0.16-0.32] unit decrease	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7379775	7379776	rs3867595	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs3867595-C	0.017	1E-8		0.231364	[0.15-0.31] unit decrease	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7383983	7383984	rs8076642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	ZBTB4	rs8076642-A	NR	2E-13		0.0214519	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7384257	7384257	rs776036568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	ZBTB4	rs776036568-TC	NR	7E-12		0.0224326	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7386278	7386279	rs7219992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p13.1	NR	rs7219992-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
641	chr17	7387298	7387298	rs146228722	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17p13.1	ZBTB4	rs146228722-ACCCGC	NR	4E-8		0.0213093	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7387729	7387730	rs144575559	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.1	ZBTB4	rs144575559-A	0.0053	8E-11		0.0836	[0.058-0.109] unit decrease	Affymetrix [18391927] (imputed)	N
641	chr17	7388715	7388716	rs117573122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs117573122-C	NR	5E-119		0.3527	[0.32-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7388715	7388716	rs117573122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117573122-C	NR	2E-1649		1.2947	[1.27-1.32] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7390694	7390695	rs11078681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs11078681-C	NR	1E-9		0.0458	[0.031-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7390694	7390695	rs11078681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs11078681-C	NR	2E-12		0.0528	[0.038-0.067] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7391328	7391328	rs35879612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17p13.1	POLR2A	rs35879612-C	0.738667	2E-10		0.01626	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
641	chr17	7391623	7391624	rs4354991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p13.1		rs4354991-?	NR	1E-8				NR [~ 8900000] (imputed)	N
641	chr17	7394340	7394341	rs56078345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.1	POLR2A	rs56078345-C	0.21388	3E-15		0.021623107	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
641	chr17	7394340	7394341	rs56078345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p13.1	NR	rs56078345-T	0.786276	6E-16		0.01889	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
641	chr17	7394444	7394445	rs78608504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs78608504-T	NR	3E-26		0.0931	[0.076-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7394444	7394445	rs78608504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs78608504-T	NR	3E-14		0.0663	[0.049-0.083] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7394444	7394445	rs78608504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs78608504-T	NR	6E-28		0.0957	[0.079-0.113] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7394967	7394968	rs8069501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs8069501-G	NR	2E-18		0.0422	[0.033-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7394967	7394968	rs8069501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs8069501-G	NR	2E-145		0.1237	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7394967	7394968	rs8069501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs8069501-G	NR	9E-12		0.0328	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7394967	7394968	rs8069501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs8069501-G	NR	2E-20		0.0446	[0.035-0.054] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7395175	7395176	rs35894069	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs35894069-A	0.347	5E-10	(men)	0.0690591	[0.047-0.091] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7396343	7396344	rs117248307	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	17p13.1	POLR2A	rs117248307-T	0.017	7E-7		4.33	[2.60-7.21] (HR)	Illumina [11220132] (imputed)	N
641	chr17	7397042	7397043	rs4239258	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	17p13.1	NR	rs4239258-T	NR	6E-8	(Cox proportional hazards regression model)	98.28	[18.72-515.88]	Illumina [810622]	N
641	chr17	7403791	7403792	rs10048219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs10048219-C	0.790256	3E-14				Affymetrix, Illumina [17210439] (imputed)	N
641	chr17	7403941	7403942	rs12936464	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	17p13.1	NR	rs12936464-A	NR	2E-6	(random effect)	1.0	NR	NR [6904914] (imputed)	N
641	chr17	7406133	7406134	rs11658168	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	POLR2A	rs11658168-A	0.361774	1E-16		0.0160772	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
641	chr17	7417639	7417640	rs8753	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Non-glioblastoma glioma	2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	17p13.1	NR	rs8753-T	NR	8E-18		3.09	[2.39-4.00]	Illumina [at least 8427548] (imputed)	N
641	chr17	7417662	7417663	rs6761	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17p13.1	SHBG	rs6761-?	0.31	3E-7	(SHBG)			Illumina [496032]	N
641	chr17	7418108	7418109	rs9989479	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs9989479-G	0.964	4E-8		0.148523	[0.096-0.201] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7418108	7418109	rs9989479	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs9989479-G	0.964	2E-7	(men)	0.149382	[0.094-0.205] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7418510	7418511	rs4796309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	POLR2A	rs4796309-T	NR	8E-9		0.0189463	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7418510	7418511	rs4796309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	POLR2A	rs4796309-T	NR	6E-10		0.0203361	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7420293	7420294	rs9675122	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17p13.1	POLR2A	rs9675122-C	0.36	5E-12	(EA)	1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
641	chr17	7429320	7429321	rs11658305	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	17p13.1	POLR2A, TNFSF12, TNFSF13	rs11658305-?	NR	8E-15		1.062	[1.046-1.078]	Illumina [13762925] (imputed)	N
641	chr17	7434818	7434819	rs8075280	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17p13.1	POLR2A, TNFSF12	rs8075280-A	0.4211	9E-9		5.754	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
641	chr17	7435039	7435040	rs8073937	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17p13.1	POLR2A, TNFSF12	rs8073937-G	0.37	1E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
641	chr17	7437180	7437181	rs11654638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs11654638-C	NR	3E-9		0.0171997	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7437180	7437181	rs11654638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs11654638-C	NR	4E-10		0.0181288	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7437957	7437958	rs7502669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs7502669-A	NR	3E-10		0.018464	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7438049	7438050	rs6503037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs6503037-A	NR	2E-9		0.0186755	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
641	chr17	7438049	7438050	rs6503037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs6503037-A	NR	7E-10		0.0190855	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
641	chr17	7438748	7438749	rs111256152	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	17p13.1	TNFSF12	rs111256152-C	NR	3E-6		0.388573	[0.22-0.55] unit decrease	NR [> 6200000] (imputed)	N
641	chr17	7438833	7438834	rs8081548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs8081548-T	NR	1E-10		0.0192959	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7438833	7438834	rs8081548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	Y_RNA	rs8081548-T	NR	3E-11		0.0197666	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
641	chr17	7438833	7438834	rs8081548	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17p13.1	TNFSF12	rs8081548-T	0.341482	8E-20		0.0184231	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
641	chr17	7439269	7439270	rs62059794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.1	NR	rs62059794-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
641	chr17	7439738	7439739	rs9900496	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17p13.1	NR	rs9900496-T	NR	2E-9		0.00661186	[0.0044-0.0088] unit decrease	NR [11010159] (imputed)	N
641	chr17	7439738	7439739	rs9900496	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17p13.1	NR	rs9900496-T	NR	9E-10	(adjusted for BMI)	0.00665	[0.0045-0.0088] unit decrease	NR [11010159] (imputed)	N
641	chr17	7443739	7443740	rs61416196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	NR	rs61416196-A	0.115	1E-27	(Tumor necrosis factor ligand superfamily member 12, TNFSF12.5939.42.3)	0.41	[0.33-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
641	chr17	7448002	7448003	rs11078694	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs11078694-T	0.22	7E-154		1.42	NR	NR [8853336] (imputed)	N
641	chr17	7448287	7448288	rs12941509	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	TNFSF12	rs12941509-G	0.279	2E-49	(Tumor necrosis factor ligand superfamily member 12, TNFSF12.5939.42.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
641	chr17	7448456	7448457	rs4968200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	TNFSF12	rs4968200-C	NR	2E-10		0.0256692	[0.018-0.034] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7448456	7448457	rs4968200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs4968200-G	NR	1E-26		0.038	[0.031-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7448456	7448457	rs4968200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs4968200-G	NR	4E-154		0.0943	[0.087-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7448456	7448457	rs4968200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs4968200-G	NR	5E-24		0.0359	[0.029-0.043] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7448456	7448457	rs4968200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs4968200-G	NR	3E-15		0.0281	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7448456	7448457	rs4968200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs4968200-G	NR	6E-67		0.0614	[0.054-0.068] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7448456	7448457	rs4968200	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.1	TNFSF12-TNFSF13	rs4968200-C	0.1421	1E-6		0.0163	[0.0098-0.0228] unit decrease	Affymetrix [19819130] (imputed)	N
641	chr17	7448456	7448457	rs4968200	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17p13.1	TNFSF12-TNFSF13	rs4968200-C	0.1421	5E-11		0.0219	[0.015-0.028] unit decrease	Affymetrix [19819130] (imputed)	N
641	chr17	7449601	7449602	rs62059801	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Tumor necrosis factor ligand superfamily member 12 levels	982 Scottish ancestry individuals	NA	17p13.1	NR	rs62059801-T	0.25221	1E-10		0.35138	[0.24-0.46] unit increase	Illumina [7903493] (imputed)	N
641	chr17	7451843	7451844	rs62059803	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs62059803-T	0.22	5E-11	(men)	0.0845945	[0.059-0.11] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7451843	7451844	rs62059803	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs62059803-T	0.22	2E-6		0.058322	[0.034-0.082] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7452077	7452078	rs77294902	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	17p13.1	TNFSF12	rs77294902-A	0.2209	5E-9		0.015762493	[0.01-0.021] unit decrease	Affymetrix [11514936] (imputed)	N
641	chr17	7452541	7452542	rs77711855	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF12	5,365 Icelandic ancestry individuals	NA	17p13.1		rs77711855-T	0.0953	9E-159		0.809237	[0.75-0.87] unit decrease	Illumina [7506463] (imputed)	N
641	chr17	7452751	7452752	rs80067372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.1	TNFSF12	rs80067372-A	0.287124	7E-17		0.020877454	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
641	chr17	7452751	7452752	rs80067372	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs80067372-G	0.7084375	9E-200	(TNFSF12, 5939_42_3)	0.763248	[0.72-0.81] unit decrease	Illumina [> 1000000] (imputed)	N
641	chr17	7452751	7452752	rs80067372	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs80067372-G	0.7084375	3E-10	(ATP1B2, 7218_87_3)	0.16727194	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
641	chr17	7452751	7452752	rs80067372	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs80067372-G	0.7084375	2E-13	(SHBG, 4929_55_1)	0.19511594	[0.14-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
641	chr17	7452751	7452752	rs80067372	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs80067372-G	0.7084375	2E-10	(SHBG, 7909_37_3)	0.17134634	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
641	chr17	7452751	7452752	rs80067372	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	17p13.1	TNFSF12, TNFSF13	rs80067372-?	NR	1E-11		1.115	[1.080-1.150]	Illumina [13537761] (imputed)	N
641	chr17	7452976	7452977	rs9899183	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 26)	3,566 European ancestry individuals	4,680 European ancestry individuals	17p13.1		rs9899183-C	0.264441952	8E-13				Illumina [7417619] (imputed)	N
641	chr17	7452976	7452977	rs9899183	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17p13.1	TNFSF12, TNFSF12-TNFSF13, SOX15, FXR2	rs9899183-T	0.714	2E-9		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	8E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	2E-12				Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	1E-12				Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?		3E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	3E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	3E-10				Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	9E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7452976	7452977	rs9899183	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	SLC2A4, KCTD11, TNFSF12, TNFSF13, ATP1B2	rs9899183-?	NR	9E-11				Affymetrix, Illumina [18800000] (imputed)	N
641	chr17	7453918	7453919	rs12940684	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	SHBG plasma levels	400 French ancestry individuals	NA	17p13.1		rs12940684-T	NR	3E-6		0.179	[0.11-0.25] nmol/L increase	Illumina [5201092] (imputed)	N
641	chr17	7453918	7453919	rs12940684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17p13.1		rs12940684-C	0.3	8E-1628		0.173	nmol/L increase	NR [NR] (imputed)	N
641	chr17	7453918	7453919	rs12940684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17p13.1		rs12940684-C	0.3	5E-324				NR [NR] (imputed)	N
641	chr17	7453918	7453919	rs12940684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17p13.1		rs12940684-C	0.3	1E-11		0.011	% increase	NR [NR] (imputed)	N
641	chr17	7453918	7453919	rs12940684	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	17p13.1		rs12940684-C	0.3	4E-10		0.013	U/L increase	NR [NR] (imputed)	N
641	chr17	7455535	7455536	rs4511593	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17p13.1	TNFSF12-TNFSF13	rs4511593-T	0.650443	1E-10		0.017484	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
641	chr17	7455609	7455610	rs117322070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs117322070-T	NR	9E-15		0.0585	[0.044-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7455609	7455610	rs117322070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117322070-T	NR	2E-118		0.1743	[0.16-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7455706	7455707	rs78608249	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p13.1	TNFSF12	rs78608249-C	0.709918	8E-13		0.0155404	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
641	chr17	7457351	7457352	rs4968210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs4968210-A	NR	4E-22		0.0248	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7457351	7457352	rs4968210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs4968210-A	NR	3E-60		0.042	[0.037-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7459298	7459299	rs11078696	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17p13.1	TNFSF12	rs11078696-G	0.196044	3E-11		0.0173762	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
641	chr17	7459298	7459299	rs11078696	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs11078696-T	0.805	4E-9	(men)	0.0827127	[0.055-0.11] unit increase	Affymetrix [up to 8900000] (imputed)	N
641	chr17	7460684	7460685	rs1128963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	17p13.1	NR	rs1128963-?	NR	4E-16	(conditional on round 2)	0.042102497	[0.032-0.052] unit increase novel	Illumina [6108953] (imputed)	N
641	chr17	7460684	7460685	rs1128963	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	17p13.1	NR	rs1128963-?	NR	4E-12	(conditional on round 2)	0.035864916	[0.026-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
641	chr17	7460956	7460957	rs9907657	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	TNFSF12, TNFSF12-TNFSF13	rs9907657-T	NR	2E-11		0.0256373	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
641	chr17	7461342	7461343	rs78744936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.1		rs78744936-?	NR	3E-15				NR [~ 8900000] (imputed)	N
641	chr17	7462013	7462014	rs187256434	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG x IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	17p13.1	TNFSF13	rs187256434-T	0.0113	1E-9		0.33	NR SD units decrease	Illumina [21568490] (imputed)	N
641	chr17	7462554	7462555	rs11552708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	17p13.1		rs11552708-A	0.397619	3E-45		0.0542375	[0.047-0.062] unit decrease	Illumina [13477433] (imputed)	N
641	chr17	7462554	7462555	rs11552708	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	17p13.1	TNFSF13	rs11552708-?	NR	4E-38		0.05626	[0.048-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
641	chr17	7462554	7462555	rs11552708	23118916	Yang M	2012-10-31	PLoS One	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	TNFSF13	rs11552708-G	0.7573	4E-9				Illumina [1940243] (imputed)	N
641	chr17	7462968	7462969	rs3803800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17p13.1		rs3803800-G	NR	9E-82		0.0467	[0.042-0.051] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
641	chr17	7462968	7462969	rs3803800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	17p13.1		rs3803800-G	0.684077	5E-8		0.022019	[0.014-0.03] unit increase	Illumina [13474682] (imputed)	N
641	chr17	7462968	7462969	rs3803800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17p13.1		rs3803800-G	NR	7E-20		0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	6E-59		0.0492	[0.043-0.055] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	1E-559		0.1534	[0.15-0.16] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	2E-47		0.0438	[0.038-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	4E-9		0.0178	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	7E-96		0.0628	[0.057-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	1E-9		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17p13.1	NR	rs3803800-G	NR	2E-14		0.0233	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17p13.1	TNFSF12-TNFSF13, TNFSF13	rs3803800-G	0.7888	3E-8		0.0069	[0.0045-0.0093] unit increase	Affymetrix [~ 7740000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17p13.1	NR	rs3803800-G	0.786	4E-11		0.0106875	[0.0075-0.0139] unit increase	NR [~ 9732723] (imputed)	N
641	chr17	7462968	7462969	rs3803800	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	17p13.1	NR	rs3803800-G	0.786	2E-10		0.011378876	[0.0079-0.0149] unit increase	NR [~ 10000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	17p13.1	TNFSF12-TNFSF13, TNFSF13	rs3803800-?	NR	3E-76		0.08939	[0.08-0.099] unit decrease novel	Illumina [6108953] (imputed)	N
641	chr17	7462968	7462969	rs3803800	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	17p13.1	TNFSF12-TNFSF13, TNFSF13	rs3803800-?	NR	3E-69		0.08509	[0.076-0.095] unit increase novel	Illumina [6108953] (imputed)	N
641	chr17	7462968	7462969	rs3803800	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	17p13.1	TNFSF13	rs3803800-A	0.242	7E-6		0.06	NR SD units increase	Illumina [21568490] (imputed)	N
641	chr17	7462968	7462969	rs3803800	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	17p13.1	TNFSF13	rs3803800-A	0.2	9E-6		1.12	[NR]	Illumina [> 1000000] (imputed)	N
641	chr17	7462968	7462969	rs3803800	22864923	Yang C	2012-08-03	Immunogenetics	Genome-wide association study identifies TNFSF13 as a susceptibility gene for IgA in a South Chinese population in smokers.	IgA levels	1,999 Han Chinese ancestry male individuals	1,496 East Asian ancestry male individuals	17p13.1	TNFSF13	rs3803800-?	NR	3E-7				Illumina [1940243] (imputed)	N
641	chr17	7462968	7462969	rs3803800	22558069	Osman W	2012-04-27	PLoS One	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p13.1	TNFSF13	rs3803800-A	0.311	7E-15	(NAP)	0.104	[0.079-0.129] unit increase	Illumina [2178644] (imputed)	N
641	chr17	7462968	7462969	rs3803800	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	17p13.1	TNFSF13	rs3803800-A	0.35	9E-11		1.21	[1.14-1.28]	Illumina [444882]	N
641	chr17	7463101	7463102	rs143094271	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17p13.1	NR	rs143094271-A	0.0213605	4E-10		0.148769	[0.1-0.2] unit increase	Affymetrix [17914406] (imputed)	N
641	chr17	7463101	7463102	rs143094271	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	17p13.1	TNFSF12-TNFSF13	rs143094271-A	0.02686	3E-23		1.43	[1.34-1.54]	Affymetrix, Illumina [43421991] (imputed)	N
641	chr17	7465734	7465735	rs183855978	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs183855978-C	0.02	2E-19		1.39	NR	NR [8853336] (imputed)	N
641	chr17	7468687	7468688	rs8068222	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17p13.1	SENP3	rs8068222-G	0.728859	5E-11	(N6-acetyllysine)	0.163	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
641	chr17	7469228	7469229	rs11078697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs11078697-T	NR	9E-27		0.1156	[0.094-0.137] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7469228	7469229	rs11078697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs11078697-T	NR	2E-128		0.2596	[0.24-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
641	chr17	7469228	7469229	rs11078697	23118916	Yang M	2012-10-31	PLoS One	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	SENP3	rs11078697-C	0.83	4E-7				Illumina [1940243] (imputed)	N
642	chr17	7474991	7474992	rs10468481	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs10468481-A	0.36	2E-9		1.08	NR	NR [8853336] (imputed)	N
642	chr17	7482778	7482779	rs12942088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p13.1		rs12942088-?	NR	1E-16				NR [~ 8900000] (imputed)	N
642	chr17	7483661	7483662	rs78180894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs78180894-?	NR	2E-9		0.0240055	[0.016-0.032] unit increase	Affymetrix [20259828] (imputed)	N
642	chr17	7483661	7483662	rs78180894	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	CD68	rs78180894-G	0.921212	8E-10		0.0378314	[0.025-0.05] unit increase	NR [17166351] (imputed)	N
642	chr17	7483661	7483662	rs78180894	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	CD68	rs78180894-G	0.919699	5E-8	(women)	0.0448086	[0.028-0.062] unit increase	NR [17166351] (imputed)	N
642	chr17	7484100	7484101	rs9901673	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.1		rs9901673-A	0.16	1E-21		9.56	z score increase	Affymetrix [9061022] (imputed)	N
642	chr17	7484100	7484101	rs9901673	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p13.1	NR	rs9901673-A	0.178	1E-17				NR [9056863] (imputed)	N
642	chr17	7484781	7484782	rs17607	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17p13.1	CD68	rs17607-A	0.993	4E-6	(AA)	0.11	unit increase	Illumina [NR] (imputed)	N
642	chr17	7484811	7484812	rs9901675	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs9901675-A	0.04007	2E-10	(SAT2)	0.03404	NR unit decrease	Illumina [1671387] (imputed)	N
642	chr17	7484811	7484812	rs9901675	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	17p13.1	CD68	rs9901675-A	0.0768	1E-6		0.1	NR SD units increase	Illumina [21568490] (imputed)	N
642	chr17	7484811	7484812	rs9901675	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs9901675-A	0.05	1E-7	(Men + Women, Conditional)	0.057	[0.037-0.077] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7485130	7485131	rs12944954	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs12944954-G	0.02	5E-109		2.02	NR	NR [8853336] (imputed)	N
642	chr17	7485205	7485206	rs1143015	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17p13.1	CD68	rs1143015-A	0.157971	3E-8		0.0491401	[0.032-0.067] unit increase	Affymetrix [9463307] (imputed)	N
642	chr17	7485582	7485583	rs62059826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1	AC113189.5	rs62059826-T	0.175376	3E-26		0.03129344	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7487107	7487108	rs2075230	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	SHBG	rs2075230-G	0.29	5E-19	(SHBG)	0.09	[0.070-0.110] unit decrease	Illumina [709211]	N
642	chr17	7487107	7487108	rs2075230	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	SHBG	rs2075230-G	0.29	1E-8	(Testosterone)	0.28	[0.18-0.38] unit decrease	Illumina [709211]	N
642	chr17	7490809	7490810	rs10852891	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p13.1	MPDU1	rs10852891-A		4E-9		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs4227-T	NR	2E-217		0.0876	[0.082-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs4227-T	NR	2E-1461		0.2264	[0.22-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs4227-T	NR	4E-17		0.0223	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17p13.1	NR	rs4227-T	NR	3E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p13.1	NR	rs4227-T	NR	2E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7491176	7491177	rs4227	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	17p13.1	MPDU1.SOX15	rs4227-G	0.2206078145809911	2E-6	(East Asian)	1.2215236	[1.12553426820976-1.32569940367022]	NR [3611808] (imputed)	N
642	chr17	7491176	7491177	rs4227	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs4227-T	0.719	3E-8	(men)	0.06512	[0.042-0.088] unit decrease	Affymetrix [up to 8900000] (imputed)	N
642	chr17	7491176	7491177	rs4227	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	17p13.1	TNFSF13	rs4227-G	0.225	2E-6		1.298	[1.188-1.418]	Illumina [3792949] (imputed)	N
642	chr17	7491176	7491177	rs4227	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	17p13.1	MPDU1	rs4227-G	0.21	4E-10		1.23	[1.16-1.32]	Illumina [444882]	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.1	NR	rs545206972-C	0.99325	4E-3495		0.622091	[0.61-0.63] unit increase	Affymetrix [16582909] (imputed)	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p13.1	NR	rs545206972-C	0.993178	8E-1919		0.677051	[0.66-0.69] unit increase	Affymetrix [16585854] (imputed)	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.1	NR	rs545206972-C	0.99325	1E-2805		0.629718	[0.62-0.64] unit increase	Affymetrix [16582965] (imputed)	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p13.1	NR	rs545206972-C	0.993178	1E-1464		0.690421	[0.67-0.71] unit increase	Affymetrix [16585866] (imputed)	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17p13.1	NR	rs545206972-T	0.006776000000000004	2E-265		0.427953	[0.4-0.45] unit increase	Affymetrix [16583148] (imputed)	N
642	chr17	7491330	7491331	rs545206972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	17p13.1	NR	rs545206972-T	0.006796000000000024	4E-43		0.251792	[0.21-0.29] unit increase	Affymetrix [16577424] (imputed)	N
642	chr17	7496838	7496839	rs118174079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs118174079-A	NR	1E-10		0.077	[0.054-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7496838	7496839	rs118174079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs118174079-A	NR	1E-52		0.1816	[0.16-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7500764	7500765	rs12936934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs12936934-T	0.192906	7E-13				Affymetrix, Illumina [23467995] (imputed)	N
642	chr17	7511756	7511757	rs1641546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs1641546-T	0.331205	8E-19				Affymetrix, Illumina [22063850] (imputed)	N
642	chr17	7512073	7512074	rs11653545	23118916	Yang M	2012-10-31	PLoS One	Genome-wide scan identifies variant in TNFSF13 associated with serum IgM in a healthy Chinese male population.	IgM levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	17p13.1	FXR2	rs11653545-G	0.83	2E-7				Illumina [1940243] (imputed)	N
642	chr17	7513295	7513297	rs755697733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17p13.1	NR	rs755697733-D	0.147491	2E-15		0.02404	[0.018-0.03] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
642	chr17	7513297	7513303	rs533761435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p13.1	FXR2	rs533761435-C	0.14721	2E-13		0.024500199	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
642	chr17	7521914	7521915	rs12150660	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs12150660-T	0.24	6E-30	(Women)	0.086	[0.071-0.101] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7521914	7521915	rs12150660	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs12150660-T	0.24	4E-80	(Men)	0.11	[0.099-0.121] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7521914	7521915	rs12150660	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs12150660-T	0.24	2E-55	(Men + Women, Conditional)	0.082	[0.072-0.092] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7521914	7521915	rs12150660	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs12150660-T	0.24	2E-106	(Men + Women)	0.103	[0.094-0.112] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7521914	7521915	rs12150660	21998597	Ohlsson C	2011-10-06	PLoS Genet	Genetic determinants of serum testosterone concentrations in men.	Testosterone levels	8,938 European ancestry male individuals	5,491 European ancestry male individuals	17p13.1	SHBG	rs12150660-T	0.23	1E-41	(Testosterone)	31.8	[27.29-36.31] ng/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
642	chr17	7524503	7524504	rs67603370	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17p13.1	SHBG	rs67603370-G	0.921665	4E-9		0.0158266	[0.011-0.021] unit decrease	Affymetrix [12370749]	N
642	chr17	7525545	7525546	rs12938899	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	17p13.1	SHBG	rs12938899-T	0.199939	5E-9		0.058853246	[0.039-0.079] unit decrease	Affymetrix [7288503] (imputed)	N
642	chr17	7527945	7527946	rs62059837	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17p13.1	TP53, SLC2A4	rs62059837-C	0.114845119	2E-7		0.2634	[0.16-0.36] unit decrease	Affymetrix [~ 9800000] (imputed)	N
642	chr17	7529901	7529902	rs13894	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17p13.1	SAT2	rs13894-G	0.942944	1E-38	(N6-acetyllysine)	0.617	[0.52-0.71] unit increase	Illumina [13039987] (imputed)	N
642	chr17	7531087	7531088	rs116289877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs116289877-G	NR	1E-16		0.2267	[0.17-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7531964	7531965	rs858519	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHBG	5,366 Icelandic ancestry individuals	NA	17p13.1		rs858519-T	0.4669	2E-24		0.1857	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
642	chr17	7531964	7531965	rs858519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p13.1	NR	rs858519-C	0.5556	2E-8		0.0262	[0.017-0.035] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
642	chr17	7531964	7531965	rs858519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.1	NR	rs858519-C	0.5049	1E-9		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
642	chr17	7531964	7531965	rs858519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.1	NR	rs858519-C	0.557294	2E-3229		0.0968957	[0.095-0.098] unit increase	Affymetrix [16582909] (imputed)	N
642	chr17	7531964	7531965	rs858519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p13.1	NR	rs858519-C	0.5565519999999999	2E-1533		0.0987547	[0.096-0.101] unit increase	Affymetrix [16585854] (imputed)	N
642	chr17	7531964	7531965	rs858519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.1	NR	rs858519-C	0.557294	3E-2579		0.0979073	[0.096-0.1] unit increase	Affymetrix [16582965] (imputed)	N
642	chr17	7531964	7531965	rs858519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p13.1	NR	rs858519-C	0.5565519999999999	4E-1146		0.100112	[0.097-0.103] unit increase	Affymetrix [16585866] (imputed)	N
642	chr17	7531964	7531965	rs858519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p13.1		rs858519-?	NR	5E-18				NR [~ 8900000] (imputed)	N
642	chr17	7531964	7531965	rs858519	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs858519-T	0.474375	6E-11	(ATP1B2, 7218_87_3)	0.16063373	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
642	chr17	7531964	7531965	rs858519	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs858519-T	0.474375	4E-16	(SHBG, 7909_37_3)	0.20090866	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
642	chr17	7531964	7531965	rs858519	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs858519-T	0.474375	2E-18	(SHBG, 4929_55_1)	0.21371244	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
642	chr17	7531964	7531965	rs858519	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs858519-T	0.474375	1E-111	(TNFSF12, 5939_42_3)	0.54040074	[0.5-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
642	chr17	7533014	7533015	rs62059839	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	17p13.1	SHBG	rs62059839-T	0.262	9E-11		1.098	[1.067-1.130]	Affymetrix [7871717] (imputed)	N
642	chr17	7533014	7533015	rs62059839	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p13.1	NR	rs62059839-T	0.26076	1E-23		0.0324826	[0.026-0.039] unit increase	Affymetrix [16580851] (imputed)	N
642	chr17	7533024	7533025	rs858518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17p13.1	SHBG	rs858518-A	0.5748	7E-9		0.02079998	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
642	chr17	7533422	7533423	rs1799941	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHBG	5,366 Icelandic ancestry individuals	NA	17p13.1		rs1799941-A	0.2466	4E-30		0.237307	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
642	chr17	7533422	7533423	rs1799941	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHBG	5,361 Icelandic ancestry individuals	NA	17p13.1		rs1799941-A	0.2466	6E-26		0.219861	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17p13.1	NR	rs1799941-A	0.26058099999999995	2E-424		0.0643261	[0.061-0.067] unit increase	Affymetrix [16578495] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17p13.1	NR	rs1799941-A	0.26092099999999996	9E-742		0.196601	[0.19-0.2] unit increase	Affymetrix [16577313] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p13.1	NR	rs1799941-A	0.26117500000000005	9E-2048		0.119776	[0.12-0.12] unit increase	Affymetrix [16582621] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p13.1	NR	rs1799941-A	0.26117500000000005	4E-1795		0.120771	[0.12-0.12] unit increase	Affymetrix [16582614] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17p13.1	NR	rs1799941-G	0.739446	5E-169		0.0627545	[0.058-0.067] unit increase	Affymetrix [16583148] (imputed)	N
642	chr17	7533422	7533423	rs1799941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	17p13.1	NR	rs1799941-G	0.739015	8E-23		0.0339594	[0.027-0.041] unit increase	Affymetrix [16577424] (imputed)	N
642	chr17	7533460	7533461	rs184782320	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs184782320-C	0.0122	4E-11	(AKR1B10)	2.353	NR unit increase	Illumina [1671387] (imputed)	N
642	chr17	7534100	7534101	rs763503065	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17p13.1		rs763503065-?	NR	6E-10		1.35431	[0.93-1.78] unit decrease	NR [9800000] (imputed)	N
642	chr17	7534677	7534678	rs6258	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17p13.1		rs6258-?	NR	2E-3373		1.42897	[1.41-1.45] unit decrease	NR [9800000] (imputed)	N
642	chr17	7534677	7534678	rs6258	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Heel bone mineral density T score	445,855 European ancestry individuals	NA	17p13.1		rs6258-?	NR	4E-21		0.104281	[0.082-0.127] unit increase	NR [9800000] (imputed)	N
642	chr17	7534677	7534678	rs6258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17p13.1	NR	rs6258-C	0.993024	5E-170		0.2178	[0.2-0.23] unit increase	Affymetrix [16578495] (imputed)	N
642	chr17	7534677	7534678	rs6258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17p13.1	NR	rs6258-C	0.993035	6E-347		0.717993	[0.68-0.75] unit increase	Affymetrix [16577313] (imputed)	N
642	chr17	7534677	7534678	rs6258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p13.1	NR	rs6258-C	0.99302	1E-1823		0.607973	[0.59-0.62] unit increase	Affymetrix [16582621] (imputed)	N
642	chr17	7534677	7534678	rs6258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p13.1	NR	rs6258-C	0.99302	5E-1586		0.610432	[0.6-0.62] unit increase	Affymetrix [16582614] (imputed)	N
642	chr17	7534677	7534678	rs6258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17p13.1	NR	rs6258-T	0.006977000000000011	7E-286		0.554565	[0.52-0.58] unit increase	Affymetrix [16585745] (imputed)	N
642	chr17	7534677	7534678	rs6258	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	SHBG	rs6258-C	0.993548	1E-14		0.0870928	[0.065-0.109] unit decrease	NR [13737936] (imputed)	N
642	chr17	7534677	7534678	rs6258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs6258-?	NR	3E-20				NR [~ 8900000] (imputed)	N
642	chr17	7534677	7534678	rs6258	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs6258-?	NR	1E-16		0.102892	[0.078-0.128] unit decrease	Affymetrix [20259828] (imputed)	N
642	chr17	7534677	7534678	rs6258	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs6258-T	0.02	3E-46	(Men + Women, Conditional)	0.272	[0.24-0.31] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7534677	7534678	rs6258	21998597	Ohlsson C	2011-10-06	PLoS Genet	Genetic determinants of serum testosterone concentrations in men.	Testosterone levels	8,938 European ancestry male individuals	5,491 European ancestry male individuals	17p13.1	SHBG	rs6258-T	0.02	2E-22	(Testosterone)	82.3	[65.64-98.96] ng/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
642	chr17	7535008	7535009	rs143609002	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17p13.1		rs143609002-?	NR	5E-12		1.59734	[1.13-2.06] unit decrease	NR [9800000] (imputed)	N
642	chr17	7536459	7536460	rs55784804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17p13.1	NR	rs55784804-T	NR	8E-14		0.0296	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7536459	7536460	rs55784804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs55784804-T	NR	3E-70		0.0737	[0.065-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7536459	7536460	rs55784804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs55784804-T	NR	3E-511		0.2003	[0.19-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7536459	7536460	rs55784804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17p13.1	NR	rs55784804-T	NR	4E-10		0.0248	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7536459	7536460	rs55784804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p13.1	NR	rs55784804-T	NR	7E-13		0.0291	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7536524	7536525	rs5030659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17p13.1		rs5030659-?	NR	8E-378		1.49384	[1.42-1.57] unit decrease	NR [9800000] (imputed)	N
642	chr17	7536526	7536527	rs6259	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17p13.1	TMEM102, FGF11, CHRNB1, ZBTB4, SLC35G6, POLR2A, TNFSF12, TNFSF12-TNFSF13, TNFSF13, SENP3, EIF4A1, CD68, MPDU1, SOX15, FXR2, AC007421.1, SHBG, SAT2, ATP1B2, TP53, DNAH2, KDM6B, TMEM88, LSMD1, CYB5D1	rs6259-?		3E-9				NR [7428630] (imputed)	N
642	chr17	7536586	7536587	rs138612626	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17p13.1		rs138612626-?	NR	1E-40		1.48439	[1.26-1.71] unit decrease	NR [9800000] (imputed)	N
642	chr17	7537097	7537098	rs858516	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17p13.1	SHBG	rs858516-T	0.568	2E-7		0.0076	[0.0049-0.0103] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
642	chr17	7537097	7537098	rs858516	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs858516-T	0.584	2E-8	(men)	0.0602525	[0.039-0.081] unit increase	Affymetrix [up to 8900000] (imputed)	N
642	chr17	7537097	7537098	rs858516	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17p13.1	NA	rs858516-T	0.5472	2E-9		0.0119	[0.008-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
642	chr17	7537791	7537792	rs727428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p13.1		rs727428-C	NR	2E-32		0.0242	[0.02-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
642	chr17	7537791	7537792	rs727428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	SHBG	rs727428-T	NR	1E-15		0.022714	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
642	chr17	7537791	7537792	rs727428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	SHBG	rs727428-T	NR	4E-16		0.0231022	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
642	chr17	7537791	7537792	rs727428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p13.1	SHBG	rs727428-T	NR	2E-10		0.0182362	[0.013-0.024] unit increase	Affymetrix [321169] (imputed)	N
642	chr17	7537791	7537792	rs727428	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17p13.1	RUNX2	rs727428-?		1E-8				NR [7428630] (imputed)	N
642	chr17	7537791	7537792	rs727428	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	17p13.1	NR	rs727428-C	0.557221	2E-11		0.00566325	[0.004-0.0073] unit increase	Affymetrix [16582268] (imputed)	N
642	chr17	7537791	7537792	rs727428	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17p13.1	NR	rs727428-T	0.444254	8E-309		0.0947823	[0.09-0.1] unit increase	Affymetrix [16585745] (imputed)	N
642	chr17	7537791	7537792	rs727428	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p13.1	NR	rs727428-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
642	chr17	7537791	7537792	rs727428	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17p13.1	NR	rs727428-T	0.45	2E-18		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
642	chr17	7537791	7537792	rs727428	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17p13.1	NR	rs727428-T	0.45	5E-8				Affymetrix [2446094] (imputed)	N
642	chr17	7537791	7537792	rs727428	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.1	intergenic	rs727428-T	0.4508	1E-11		0.0187	[0.013-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
642	chr17	7537791	7537792	rs727428	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17p13.1	NR	rs727428-T	0.454	4E-18		0.0158	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
642	chr17	7537791	7537792	rs727428	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17p13.1	NR	rs727428-T	0.4542	5E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
642	chr17	7537791	7537792	rs727428	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17p13.1	NR	rs727428-?		4E-14	(SHBG)	0.258	[NR] unit decrease	Illumina [NR]	N
642	chr17	7537791	7537792	rs727428	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	17p13.1	SHBG	rs727428-T	0.414	1E-12	(serum testosterone)	0.073	[0.053-0.093] unit decrease	Illumina [642461]	N
642	chr17	7537791	7537792	rs727428	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	17p13.1	SHBG	rs727428-T	0.414	1E-11	(DHT levels)	0.103	[0.074-0.132] unit decrease	Illumina [642461]	N
642	chr17	7537791	7537792	rs727428	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	17p13.1	FXR2, SHBG, SAT2, ATP1B2	rs727428-T	0.42	2E-16		0.126	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
642	chr17	7538784	7538785	rs2955617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	SHBG	rs2955617-C	NR	5E-11		0.0197338	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
642	chr17	7538784	7538785	rs2955617	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	17p13.1	SHBG-ATP1B2	rs2955617-A	0.667	5E-9				Affymetrix, Illumina [2331072] (imputed)	N
642	chr17	7543893	7543894	rs12051767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs12051767-T	NR	5E-73		0.0907	[0.081-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7543893	7543894	rs12051767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs12051767-T	NR	3E-805		0.3029	[0.29-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7543893	7543894	rs12051767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs12051767-T	NR	1E-10		0.032	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7543893	7543894	rs12051767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs12051767-T	NR	3E-26		0.0528	[0.043-0.063] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7545720	7545721	rs1641537	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs1641537-T	0.14	1E-24	(Men + Women, Conditional)	0.064	[0.052-0.076] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7545721	7545722	rs34146209	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	17p13.1	NR	rs34146209-A	0.9636	6E-7		0.1675	[0.1-0.23] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7549680	7549681	rs1641523	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP1B2	5,366 Icelandic ancestry individuals	NA	17p13.1		rs1641523-C	0.4524	1E-40		0.248584	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
642	chr17	7549680	7549681	rs1641523	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	17p13.1	ATP1B2	rs1641523-C	0.4276	1E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
642	chr17	7552122	7552123	rs72829446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17p13.1	Intergenic	rs72829446-C	0.8949	2E-8		0.0206	[0.013-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
642	chr17	7552122	7552123	rs72829446	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	17p13.1	SHBG	rs72829446-T	0.101	9E-10	(DHT levels)	0.164	[0.11-0.22] unit increase	Illumina [642461]	N
642	chr17	7552122	7552123	rs72829446	22936694	Jin G	2012-08-30	Hum Mol Genet	Genome-wide association study identifies a new locus JMJD1C at 10q21 that may influence serum androgen levels in men.	Androgen levels	3,225 European ancestry male individuals	NA	17p13.1	SHBG	rs72829446-T	0.101	6E-8	(serum testosterone)	0.099	[0.064-0.134] unit increase	Illumina [642461]	N
642	chr17	7553742	7553743	rs1624085	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	ATP1B2	rs1624085-G	NR	5E-10		0.0179935	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
642	chr17	7554771	7554772	rs1642762	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	ATP1B2	rs1642762-T	0.587	2E-29	(Sodium/potassium-transporting ATPase subunit beta-2, ATP1B2.7218.87.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
642	chr17	7557418	7557419	rs1642763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p13.1	ATP1B2	rs1642763-A	NR	6E-12		0.0229714	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
642	chr17	7557833	7557834	rs1642764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.1	ATP1B2	rs1642764-T	0.523358	2E-13		0.016888808	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7557833	7557834	rs1642764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs1642764-T	0.510519	9E-22				Affymetrix, Illumina [24588908] (imputed)	N
642	chr17	7557833	7557834	rs1642764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.1	NR	rs1642764-T	0.522492	2E-22		0.018566	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
642	chr17	7557833	7557834	rs1642764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.1	NR	rs1642764-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
642	chr17	7557833	7557834	rs1642764	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	17p13.1	TP53, ATP1B2	rs1642764-C	0.501	3E-13		1.14	[1.1-1.18]	Affymetrix, Illumina [7556215] (imputed)	N
642	chr17	7559036	7559037	rs55831773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs55831773-?	NR	3E-34				NR [~ 8900000] (imputed)	N
642	chr17	7559676	7559677	rs1641511	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17p13.1	NR	rs1641511-G	0.2355	1E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
642	chr17	7560153	7560153	rs113677020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17p13.1	NR	rs113677020-I	0.281951	2E-20		0.022256	[0.018-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
642	chr17	7560167	7560167	rs386385565	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17p13.1	ATP1B2	rs386385565-CTT	0.27965	1E-17		0.022206124	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
642	chr17	7567514	7567515	rs35119871	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs35119871-C	0.62921875	5E-57	(TNFSF12, 5939_42_3)	0.40169427	[0.35-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
642	chr17	7567514	7567515	rs35119871	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NR	rs35119871-C	0.62921875	5E-15	(ATP1B2, 7218_87_3)	0.19766733	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
642	chr17	7568326	7568327	rs72829457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17p13.1		rs72829457-C	0.884181	2E-11		0.0435553	[0.031-0.056] unit decrease	NR [11722792] (imputed)	N
642	chr17	7569541	7569542	rs74351250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs74351250-A	NR	1E-10		0.0369	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7569541	7569542	rs74351250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs74351250-A	NR	4E-80		0.1088	[0.098-0.12] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7569541	7569542	rs74351250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs74351250-A	NR	2E-23		0.0569	[0.046-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7569697	7569698	rs8073498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs8073498-C	NR	1E-34		0.0315	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7569697	7569698	rs8073498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs8073498-C	NR	8E-131		0.0624	[0.057-0.067] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7570928	7570929	rs4968204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17p13.1		rs4968204-T	NR	8E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
642	chr17	7571079	7571080	rs9894946	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17p13.1	TP53	rs9894946-A	0.158891	2E-9		0.0175495	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p13.1		rs78378222-G	NR	4E-18		0.0819	[0.063-0.1] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	17p13.1		rs78378222-G	NR	4E-63		0.8175	[0.72-0.91] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	17p13.1		rs78378222-G	NR	8E-19		0.3949	[0.31-0.48] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p13.1		rs78378222-G	NR	3E-20		0.0862	[0.068-0.104] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17p13.1		rs78378222-G	NR	4E-21		0.0921	[0.073-0.111] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p13.1		rs78378222-G	NR	3E-17		0.0915	[0.07-0.113] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17p13.1		rs78378222-G	NR	5E-20		0.0992	[0.078-0.12] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	17p13.1		rs78378222-G	NR	1E-10		0.3093	[0.22-0.4] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
642	chr17	7571751	7571752	rs78378222	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17p13.1		rs78378222-T	0.987	1E-13		0.38	[0.28-0.48] % increase	Affymetrix [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	17p13.1	TP53	rs78378222-?	0.012499999999999956	5E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [8494288] (imputed)	N
642	chr17	7571751	7571752	rs78378222	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	17p13.1	NR	rs78378222-G	0.01	5E-6		0.7	[0.54-0.86]	Illumina [8468885] (imputed)	N
642	chr17	7571751	7571752	rs78378222	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	17p13.1	TP53	rs78378222-G	0.0112281	8E-27		0.45094877	[0.37-0.53] unit increase	Affymetrix [7260263] (imputed)	N
642	chr17	7571751	7571752	rs78378222	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17p13.1	NR	rs78378222-G	NR	3E-11		1.262	[1.18-1.35]	Affymetrix, Illumina [29235255] (imputed)	N
642	chr17	7571751	7571752	rs78378222	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.1	TP53	rs78378222-T	0.9877	5E-56		0.138	[0.12-0.16] unit decrease	Affymetrix [18391927] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.012331	3E-21		0.09691015	[0.077-0.117] unit increase	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.012351	3E-9		0.060703274	[0.041-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.01235	2E-22		0.10048521	[0.08-0.121] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.012293	2E-12		0.07316113	[0.053-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.012315	1E-20		0.0964134	[0.078-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p13.1	TP53	rs78378222-G	0.012315	1E-22		0.100040965	[0.08-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs78378222-G	0.0117131	5E-28				Affymetrix, Illumina [24246363] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p13.1	NR	rs78378222-G	0.012209	3E-30		0.097152	[0.08-0.114] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs78378222-G	0.0120092	2E-26				Affymetrix, Illumina [20825802] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p13.1	NR	rs78378222-G	0.012449	1E-28		0.09893	[0.082-0.116] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	17p13.1		rs78378222-G	0.012122	1E-8		1.4838997	NR	Affymetrix [7846216] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	17p13.1		rs78378222-G	0.012122	2E-9		2.4857073	NR	Affymetrix [7846216] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17p13.1		rs78378222-G	0.012122	2E-12		1.3869625	[1.27-1.52]	Affymetrix [7846216] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17p13.1	NR	rs78378222-?	NR	7E-36				NR [up to 7000000]	N
642	chr17	7571751	7571752	rs78378222	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17p13.1	NR	rs78378222-?	NR	2E-18				NR [up to 7000000]	N
642	chr17	7571751	7571752	rs78378222	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	17p13.1	NR	rs78378222-?	NR	2E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	8,602 European ancestry triple negative cases, 9,414 European ancestry BRCA1 mutation carrier cases, 100,971 European ancestry controls	NA	17p13.1	NR	rs78378222-T	0.99	1E-8		1.4492754	[1.3-1.61]	Illumina [~ 9700000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	17p13.1	TP53	rs78378222-T	0.9891746	3E-12				Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	17p13.1	TP53	rs78378222-G	0.0108	3E-10		1.321353	NR	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17p13.1	NR	rs78378222-G	0.0124091	2E-21		0.301783	[0.24-0.36] unit increase	Affymetrix [17914406] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids and heavy menstrual bleeding	3,409 European ancestry cases, 199,171 European ancestry controls	NA	17p13.1	NR	rs78378222-G	0.99	2E-7		1.69	[1.39-2.08]	Affymetrix [10308721] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	17p13.1	SHBG, TP53	rs78378222-T	0.99	7E-31		1.54	[1.43-1.66]	Affymetrix, Illumina [8662096] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	17p13.1	TP53	rs78378222-G	0.01	3E-33		1.8518518	[1.67-2.04]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	17p13.1	TP53	rs78378222-G	0.011814	4E-25		1.4285715	[1.33-1.54]	Affymetrix [7600000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	17p13.1	TP53	rs78378222-G	0.010825	6E-33		1.4925373	[1.37-1.67]	Affymetrix, Illumina [up to 9061544] (imputed)	N
642	chr17	7571751	7571752	rs78378222	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17p13.1	TP53	rs78378222-G	0.013234	2E-11		0.07863	[0.056-0.102] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.1		rs78378222-?	NR	4E-8				NR [~ 8900000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.1		rs78378222-?	NR	4E-26				NR [~ 8900000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p13.1		rs78378222-?	NR	5E-29				NR [~ 8900000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17p13.1	NR	rs78378222-?	NR	4E-15		0.81578	[0.61-1.02] unit increase	Affymetrix [7794483] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17p13.1	NR	rs78378222-?	NR	1E-8	(male)	0.91528	[0.6-1.23] unit increase	Affymetrix [7794483] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17p13.1	NR	rs78378222-?	NR	1E-8	(female)	0.665	[0.44-0.89] unit increase	Affymetrix [7794483] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	TP53	rs78378222-G	0.9886	8E-23		1.3305	[1.07-1.6] mmHg increase	Affymetrix [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	TP53	rs78378222-G	0.6535	3E-15		1.0386	[0.78-1.3] mmHg decrease	Affymetrix [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	17p13.1	TP53	rs78378222-G	0.01827	4E-37		1.74	[1.6-1.89]	Affymetrix, Illumina [43421991] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	17p13.1	TP53	rs78378222-G	NR	9E-16	(Below median age-at-diagnosis)	3.8	[2.74-5.25]	NR [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	17p13.1	TP53	rs78378222-G	NR	4E-13	(Above median age-at-diagnosis)	3.26	[2.37-4.48]	NR [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	17p13.1	TP53	rs78378222-G	NR	3E-8	(Median age-at-diagnosis)	2.54	[1.83-3.53]	NR [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	4E-8	(females)	2.7	[1.89-3.85]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	1E-10	(males)	2.79	[2.04-3.80]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	3E-17	(males)	2.41	[1.97-2.96]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	2E-12	(females)	2.43	[1.90-3.12]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	2E-9	(females)	2.67	[1.93-3.68]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	17p13.1	TP53	rs78378222-G	NR	1E-14	(males)	2.65	[2.07-3.40]	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7571751	7571752	rs78378222	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		17p13.1	NR	rs78378222-T	NR	7E-7		1.4456319	[1.25-1.67]	Affymetrix [5734850] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	17p13.1	TP53	rs78378222-G	0.01	3E-28		0.013	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Cancer	7,745 European ancestry male cases, 58,562 European ancestry male controls	NA	17p13.1	TP53	rs78378222-T	0.99	8E-6		0.0267	[0.015-0.038] unit decrease	Affymetrix [at least 641018] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	17p13.1	TP53	rs78378222-G	0.013	5E-27		2.73	2.27-3.28	Illumina [at least 6769856] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	17p13.1	TP53	rs78378222-G	0.013	9E-38		2.53	2.19-2.91	Illumina [at least 6887412] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	17p13.1	TP53	rs78378222-G	0.013	5E-29		2.63	2.22-3.11	Illumina [at least 6790270] (imputed)	N
642	chr17	7571751	7571752	rs78378222	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17p13.1	TP53, SLC2A4	rs78378222-T	0.99	2E-10		0.904	[0.63-1.18] unit increase	Affymetrix [~ 9800000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17p13.1	TP53	rs78378222-G	0.0121	6E-9		0.09653765	[0.064-0.129] unit decrease	Affymetrix [~ 2500000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.1	TP53	rs78378222-T		4E-13		0.875	unit increase	Affymetrix [at least 2696785] (imputed)	N
642	chr17	7571751	7571752	rs78378222	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p13.1	TP53	rs78378222-T		1E-8		0.638	unit decrease	Affymetrix [at least 2696785] (imputed)	N
642	chr17	7571751	7571752	rs78378222	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	17p13.1	TP53	rs78378222-G	0.01	2E-10		1.41	[NR]	Illumina [at least 560000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	17p13.1	TP53	rs78378222-G	0.018	1E-20		2.07	[NR]	Illumina [24988228] (imputed)	N
642	chr17	7571751	7571752	rs78378222	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	17p13.1	TP53	rs78378222-G		4E-22		2.24	[1.90-2.64]	Illumina [38500000] (imputed)	N
642	chr17	7571751	7571752	rs78378222	21946351	Stacey SN	2011-09-25	Nat Genet	A germline variant in the TP53 polyadenylation signal confers cancer susceptibility.	Basal cell carcinoma	2,121 European ancestry cases, 39,614 European ancestry controls	2,506 European and other ancestry cases, 15,101 European and other ancestry controls	17p13.1	TP53	rs78378222-C	NR	2E-20		2.16	[1.83-2.54]	Illumina [~ 16000000] (imputed)	N
642	chr17	7574774	7574775	rs1641549	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	17p13.1	SHBG, TP53	rs1641549-T	0.239	1E-15	(SHBG)	0.127	[NR] unit decrease	Illumina [7879351] (imputed)	N
642	chr17	7574778	7574779	rs1641548	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	17p13.1	TP53	rs1641548-C	0.8245	1E-9		1.0812	NR	Affymetrix, Illumina [NR] (imputed)	N
642	chr17	7578114	7578115	rs1625895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17p13.1	NR	rs1625895-C	NR	7E-10		0.0219	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7578114	7578115	rs1625895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs1625895-C	NR	6E-36		0.0467	[0.039-0.054] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7578114	7578115	rs1625895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs1625895-C	NR	4E-195		0.1107	[0.1-0.12] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7578114	7578115	rs1625895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p13.1	NR	rs1625895-C	NR	3E-12		0.0254	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7578114	7578115	rs1625895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17p13.1	NR	rs1625895-C	NR	5E-9		0.0208	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7578114	7578115	rs1625895	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17p13.1	SHBG	rs1625895-T	0.12	2E-21	(Men + Women, Conditional)	0.12	[0.11-0.13] unit decrease	Affymetrix, Illumina [2543887] (imputed)	N
642	chr17	7578670	7578671	rs35850753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.1		rs35850753-?	NR	1E-8				NR [~ 8900000] (imputed)	N
642	chr17	7578670	7578671	rs35850753	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	17p13.1	TP53	rs35850753-T	0.020167	1E-8	(European American)	1.9466	[1.57-2.43]	Illumina [7968453] (imputed)	N
642	chr17	7578670	7578671	rs35850753	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	17p13.1	NR	rs35850753-T	NR	9E-20		2.53	[2.07-3.08]	Illumina [at least 8427548] (imputed)	N
642	chr17	7578670	7578671	rs35850753	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	17p13.1	NR	rs35850753-T	NR	4E-12		2.79	[2.09-3.72]	Illumina [at least 8427548] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	4E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	1E-117		0.0661	[0.06-0.072] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	3E-938		0.1868	[0.18-0.19] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	3E-11		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	4E-10		0.0178	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	1E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	3E-18		0.0243	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579471	7579472	rs1042522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17p13.1	NR	rs1042522-C	NR	9E-11		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7579704	7579705	rs201753350	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	17p13.1	TP53	rs201753350-T	0.0062	1E-8		0.15	NR unit decrease	Illumina [9591901] (imputed)	N
642	chr17	7588679	7588680	rs17882854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs17882854-G	NR	1E-14		0.0581	[0.043-0.073] unit increase	Affymetrix [9000000] (imputed)	N
642	chr17	7588749	7588750	rs17883687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs17883687-T	NR	4E-15		0.0837	[0.063-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7588749	7588750	rs17883687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs17883687-T	NR	4E-74		0.1936	[0.17-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7593318	7593319	rs34289079	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Testosterone levels	4,291 European ancestry men, 3,352 European ancestry women	NA	17p13.1	NR	rs34289079-C	0.096	4E-9	(men)	0.106121	[0.071-0.141] unit decrease	Affymetrix [up to 8900000] (imputed)	N
642	chr17	7598865	7598866	rs9914473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs9914473-G	NR	7E-13		0.0424	[0.031-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7598865	7598866	rs9914473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs9914473-G	NR	3E-44		0.0821	[0.071-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7599259	7599260	rs12939910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs12939910-G	NR	4E-22		0.0441	[0.035-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7599259	7599260	rs12939910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs12939910-G	NR	1E-238		0.1499	[0.14-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
642	chr17	7599259	7599260	rs12939910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs12939910-G	NR	2E-11		0.0304	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7606721	7606722	rs7640	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	17p13.1	EFNB3, WRAP53	rs7640-C	0.8	4E-10		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
643	chr17	7606721	7606722	rs7640	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	17p13.1	WRAP53	rs7640-?	NR	7E-7		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [8037763] (imputed)	N
643	chr17	7610190	7610191	rs117584963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs117584963-T	NR	9E-10		0.0927	[0.063-0.122] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7610190	7610191	rs117584963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117584963-T	NR	2E-30		0.1746	[0.14-0.2] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7617377	7617378	rs62062590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs62062590-A	NR	1E-37		0.0352	[0.03-0.04] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7617377	7617378	rs62062590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs62062590-A	NR	2E-251		0.0927	[0.087-0.098] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7621463	7621464	rs3803802	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	17p13.1	NR	rs3803802-?	NR	5E-6				Affymetrix [NR]	N
643	chr17	7630192	7630193	rs55662831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs55662831-A	NR	3E-42		0.0356	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7630192	7630193	rs55662831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs55662831-A	NR	4E-276		0.0926	[0.088-0.098] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7630192	7630193	rs55662831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs55662831-A	NR	8E-18		0.0224	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7631693	7631694	rs62062609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p13.1	NR	rs62062609-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
643	chr17	7633691	7633692	rs16956936	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs16956936-T	NR	1E-37		0.0487	[0.041-0.056] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7633691	7633692	rs16956936	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs16956936-T	NR	2E-12		0.0265	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7633691	7633692	rs16956936	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	17p13.1	intergenic	rs16956936-?	0.86	5E-7		1.09	[1.00-1.19]	Affymetrix, Illumina [841622] (imputed)	N
643	chr17	7644166	7644167	rs34511268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs34511268-C	NR	3E-15		0.1843	[0.14-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7651905	7651906	rs117387630	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17p13.1	NR	rs117387630-T	0.02	4E-40		1.64	NR	NR [8853336] (imputed)	N
643	chr17	7664238	7664239	rs12185237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17p13.1	NR	rs12185237-T	NR	8E-11		0.0379	[0.027-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7664238	7664239	rs12185237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs12185237-T	NR	9E-66		0.0997	[0.088-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7669760	7669761	rs35788701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs35788701-A	NR	2E-13		0.066	[0.048-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7672329	7672330	rs145804336	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	17p13.1	NR	rs145804336-?	NR	4E-6		1.278	[0.76-1.8] unit increase	Illumina [at least 560000] (imputed)	N
643	chr17	7682604	7682605	rs17806045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs17806045-T	NR	2E-41		0.0477	[0.041-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7684082	7684083	rs117487916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117487916-A	NR	5E-14		0.0862	[0.064-0.109] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7692587	7692588	rs55911533	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17p13.1		rs55911533-T	NR	2E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
643	chr17	7692655	7692656	rs56217607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs56217607-T	NR	8E-49		0.0586	[0.051-0.066] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7700062	7700063	rs138420351	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	17p13.1	DNAH2	rs138420351-?	NR	8E-14		0.0097	[0.0068-0.0126] unit decrease	Affymetrix [21347608] (imputed)	N
643	chr17	7700062	7700063	rs138420351	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	17p13.1	DNAH2	rs138420351-?	NR	2E-9		0.0107	[0.0062-0.0152] unit decrease	Affymetrix [21347608] (imputed)	N
643	chr17	7700062	7700063	rs138420351	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17p13.1	NR	rs138420351-T	0.0115836	2E-11		0.242382	[0.17-0.31] unit increase	Affymetrix [17914406] (imputed)	N
643	chr17	7700062	7700063	rs138420351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs138420351-?	NR	1E-19				NR [~ 8900000] (imputed)	N
643	chr17	7700062	7700063	rs138420351	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	17p13.1	DNAH2	rs138420351-T	0.01311	3E-30		1.76	[1.6-1.94]	Affymetrix, Illumina [43421991] (imputed)	N
643	chr17	7700062	7700063	rs138420351	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		17p13.1	NR	rs138420351-C	NR	5E-8		1.5596974	[1.33-1.83]	Affymetrix [5734850] (imputed)	N
643	chr17	7701805	7701806	rs2131810	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs2131810-T	NR	2E-13		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7720090	7720091	rs11078708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs11078708-C	NR	6E-10		0.0192	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7720090	7720091	rs11078708	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs11078708-C	NR	2E-10		0.0195	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
643	chr17	7721230	7721231	rs9916791	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs9916791-C	NR	7E-17		0.0237	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7721541	7721542	rs1105813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.1	DNAH2	rs1105813-A	0.11365	8E-13		0.026427777	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
643	chr17	7721930	7721931	rs10153304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.1	DNAH2	rs10153304-A	0.112901	4E-10		0.022287944	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr17	7721930	7721931	rs10153304	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	17p13.1	NR	rs10153304-G		2E-6		0.1547	[0.091-0.218] SD units decrease	NR [10700000] (imputed)	N
643	chr17	7722250	7722251	rs142627042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs142627042-T	NR	2E-9		0.3623	[0.24-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
643	chr17	7731040	7731041	rs7406485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p13.1	DNAH2	rs7406485-G	0.322326	3E-9		0.014287878	[0.0096-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr17	7732350	7732351	rs57828851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17p13.1		rs57828851-A	NR	4E-17		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.1	DNAH2	rs57828851-A	0.58055	3E-19		0.02030819	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p13.1	DNAH2	rs57828851-A	0.580548	7E-22		0.021807628	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p13.1	DNAH2	rs57828851-A	0.580573	7E-25		0.023216313	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p13.1	NR	rs57828851-A	0.567788	5E-27		0.020718	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs57828851-A	0.549902	4E-26				Affymetrix, Illumina [24653286] (imputed)	N
643	chr17	7732350	7732351	rs57828851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17p13.1	NR	rs57828851-A	0.567991	3E-29		0.021541	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
643	chr17	7733036	7733037	rs12603355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17p13.1		rs12603355-?	NR	4E-10				NR [~ 8900000] (imputed)	N
644	chr17	7733832	7733833	rs34121753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.1	DNAH2	rs34121753-G	0.577999	1E-10		0.014573354	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7733832	7733833	rs34121753	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	17p13.1	NR	rs34121753-G	0.532	1E-9		0.0110421395	[0.0075-0.0146] unit increase	Affymetrix [NR] (imputed)	N
644	chr17	7733832	7733833	rs34121753	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	17p13.1	KDM6B	rs34121753-A	0.4211	5E-8		0.012322057	[0.0079-0.0168] unit decrease	Affymetrix [11514936] (imputed)	N
644	chr17	7733832	7733833	rs34121753	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17p13.1	NR	rs34121753-G	0.572	5E-14		0.0101504	[0.0075-0.0128] unit increase	NR [~ 9732723] (imputed)	N
644	chr17	7733832	7733833	rs34121753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17p13.1	DNAH2	rs34121753-G	0.5769	8E-9		0.0209492	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7733832	7733833	rs34121753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17p13.1	DNAH2	rs34121753-G	0.5768	6E-12		0.02461838	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7735062	7735063	rs57985356	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17p13.1	DNAH2	rs57985356-?	NR	1E-14		0.023936091	[0.018-0.03] unit decrease	Illumina [27896057] (imputed)	N
644	chr17	7737330	7737331	rs12945870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs12945870-T	0.545502	9E-25				Affymetrix, Illumina [24332387] (imputed)	N
644	chr17	7737330	7737331	rs12945870	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p13.1	DNAH2	rs12945870-C		1E-13		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
644	chr17	7737330	7737331	rs12945870	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17p13.1	DNAH2	rs12945870-T	0.5683	2E-8		0.0058	[0.0038-0.0078] unit increase	Affymetrix [~ 7740000] (imputed)	N
644	chr17	7737330	7737331	rs12945870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.1		rs12945870-?	NR	6E-26				NR [~ 8900000] (imputed)	N
644	chr17	7737330	7737331	rs12945870	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17p13.1	DNAH2	rs12945870-T	0.5676	2E-10		0.0228786	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7740169	7740170	rs62059712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17p13.1		rs62059712-C	NR	5E-10		0.0693	[0.047-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
644	chr17	7740169	7740170	rs62059712	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17p13.1	KDM6B	rs62059712-C	0.0803209	5E-10		0.069305666	[0.047-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
644	chr17	7740169	7740170	rs62059712	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p13.1	KDM6B	rs62059712-C	0.9237	2E-9		0.3944	[0.27-0.52] mmHg increase	Affymetrix [NR] (imputed)	N
644	chr17	7740169	7740170	rs62059712	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	17p13.1	ATP1B2	rs62059712-T	0.9184	5E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17p13.1		rs74480102-A	NR	4E-19		0.0522	[0.041-0.064] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17p13.1		rs74480102-A	NR	1E-18		0.0515	[0.04-0.063] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17p13.1		rs74480102-A	NR	6E-35		0.0533	[0.045-0.062] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17p13.1		rs74480102-G	0.957	2E-10				Affymetrix [10369434] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17p13.1		rs74480102-G	0.957	7E-9				Affymetrix [10369434] (imputed)	N
644	chr17	7742600	7742601	rs74480102	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17p13.1		rs74480102-G	0.957	3E-23				Affymetrix [10369434] (imputed)	N
644	chr17	7742600	7742601	rs74480102	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs74480102-A	NR	9E-41		0.0836	[0.071-0.096] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p13.1	KDM6B	rs74480102-A	0.042913	2E-18		0.0483289	[0.038-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.1	KDM6B	rs74480102-A	0.042942	8E-20		0.049624026	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.1	KDM6B	rs74480102-A	0.042924	3E-37		0.0697409	[0.059-0.08] unit increase	Affymetrix [93095623] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.1	KDM6B	rs74480102-A	0.042922	1E-36		0.06900599	[0.058-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.1	KDM6B	rs74480102-A	0.042917	1E-55		0.085639834	[0.075-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs74480102-A	0.0410982	7E-60				Affymetrix, Illumina [19872809] (imputed)	N
644	chr17	7742600	7742601	rs74480102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17p13.1	NR	rs74480102-A	0.042751	3E-63		0.083018	[0.073-0.093] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
644	chr17	7742600	7742601	rs74480102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.1		rs74480102-?	NR	2E-28				NR [~ 8900000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.1		rs74480102-?	NR	1E-60				NR [~ 8900000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	4E-18		0.07647303	[0.059-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	8E-16		0.07074734	[0.054-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	4E-15		0.06924646	[0.052-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	6E-14		0.06605391	[0.049-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	1E-10		0.05694184	[0.04-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7742600	7742601	rs74480102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17p13.1	KDM6B	rs74480102-A	0.043	7E-21		0.08243702	[0.065-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7754992	7754993	rs12939056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p13.1	KDM6B	rs12939056-A	0.567652	1E-11		0.0152376825	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
644	chr17	7754992	7754993	rs12939056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p13.1		rs12939056-?	NR	9E-8				NR [~ 8900000] (imputed)	N
644	chr17	7754992	7754993	rs12939056	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	17p13.1	KDM6B	rs12939056-A	0.567442475535572	8E-7		0.008524002	unit increase	NR [9276018] (imputed)	N
644	chr17	7756999	7756999	rs35202212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p13.1		rs35202212-CT	NR	4E-13		0.0206	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
644	chr17	7757725	7757725	rs112843870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.1	KDM6B	rs112843870-TA	0.571894	2E-17		0.019352185	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7757725	7757725	rs112843870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p13.1	KDM6B	rs112843870-TA	0.57211	5E-9		0.013246074	[0.0088-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
644	chr17	7758521	7758522	rs2270518	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17p13.1	KDM6B	rs2270518-T	0.19	8E-10		0.033	[0.017-0.049] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
644	chr17	7759476	7759477	rs55809496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p13.1		rs55809496-C	0.42	4E-13		7.25	z score increase	Affymetrix [9061022] (imputed)	N
644	chr17	7759476	7759477	rs55809496	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p13.1	NR	rs55809496-C	0.4302	2E-14				NR [9056863] (imputed)	N
644	chr17	7759574	7759575	rs75623217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p13.1	CYB5D1	rs75623217-A	0.010355	2E-11		0.08299012	[0.059-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr17	7760982	7760983	rs3744251	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17p13.1	NR	rs3744251-A	0.08	3E-10		0.022	[0.015-0.029] unit increase	NR [NR]	N
644	chr17	7780690	7780690	rs151268686	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs151268686-?	NR	4E-34		0.048145	[0.04-0.056] unit increase	Affymetrix [20259828] (imputed)	N
644	chr17	7780708	7780709	rs7223364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p13.1	LSMD1	rs7223364-T	0.121898	7E-10		0.020863218	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
644	chr17	7781018	7781019	rs74439044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p13.1	LSMD1	rs74439044-C	0.09671	9E-13		0.027121829	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
644	chr17	7781018	7781019	rs74439044	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17p13.1	LSMD1	rs74439044-C	0.0972493	1E-8		0.05780308	[0.038-0.078] unit increase	Affymetrix [7288503] (imputed)	N
644	chr17	7781018	7781019	rs74439044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17p13.1		rs74439044-?	NR	1E-13				NR [~ 8900000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs74439044-?	NR	4E-31		0.039678	[0.033-0.047] unit increase	Affymetrix [20259828] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	3E-7				Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	2E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	4E-7				Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?		2E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	7E-18				Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	2E-21	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	4E-18				Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17p13.1	NAA38, KCNAB3, VAMP2	rs74439044-?	NR	1E-20	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
644	chr17	7781018	7781019	rs74439044	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	NAA38	rs74439044-T	0.903572	6E-7	(women)	0.0394261	[0.024-0.055] unit increase	NR [17166351] (imputed)	N
644	chr17	7781018	7781019	rs74439044	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	NAA38	rs74439044-T	0.903407	2E-11		0.0375947	[0.026-0.049] unit increase	NR [17166351] (imputed)	N
644	chr17	7781019	7781020	rs76833657	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	NAA38	rs76833657-G	0.923619	2E-38		0.045626	[0.039-0.053] unit increase	NR [13737936] (imputed)	N
644	chr17	7781019	7781020	rs76833657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs76833657-?	NR	2E-35				NR [~ 8900000] (imputed)	N
644	chr17	7781699	7781699	rs57414300	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs57414300-?	NR	2E-17		0.0230866	[0.018-0.028] unit increase	Affymetrix [20259828] (imputed)	N
644	chr17	7787775	7787777	rs377079849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17p13.1	LSMD1	rs377079849-C	0.6016	2E-9		0.02337324	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7787775	7787777	rs377079849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17p13.1	LSMD1	rs377079849-C	0.6016	3E-9		0.02311696	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7787775	7787777	rs377079849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17p13.1	LSMD1	rs377079849-C	0.6017	2E-9		0.02318978	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr17	7789541	7789542	rs7503751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.1		rs7503751-?	NR	2E-12				NR [~ 8900000] (imputed)	N
644	chr17	7789541	7789542	rs7503751	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17p13.1	intergenic	rs7503751-A	0.08	1E-7		0.431	[0.27-0.59] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
644	chr17	7789541	7789542	rs7503751	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17p13.1	intergenic	rs7503751-A	0.08	1E-6	(EA, initial)	0.701	[0.42-0.98] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
644	chr17	7790047	7790048	rs55752997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17p13.1		rs55752997-A	NR	5E-12		0.0213	[0.015-0.027] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
644	chr17	7790047	7790048	rs55752997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	17p13.1	NR	rs55752997-A	NR	9E-10		0.0282	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7790047	7790048	rs55752997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs55752997-A	NR	5E-39		0.0632	[0.054-0.073] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7790047	7790048	rs55752997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs55752997-A	NR	4E-16		0.0375	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7793161	7793162	rs75678869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs75678869-T	NR	8E-13		0.0617	[0.045-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
644	chr17	7795971	7795972	rs11078713	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17p13.1	NR	rs11078713-G	0.419	1E-14		0.00849662	[0.0063-0.0106] unit decrease	NR [9732723] (imputed)	N
644	chr17	7795971	7795972	rs11078713	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17p13.1	NR	rs11078713-G	0.419348	2E-8	(Conditioned on chr17:7803118)	0.014582893	[0.0095-0.0196] unit decrease	NR [~ 10000000] (imputed)	N
644	chr17	7795971	7795972	rs11078713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	17p13.1		rs11078713-?	NR	2E-8				NR [~ 8900000] (imputed)	N
644	chr17	7803117	7803118	rs28441558	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17p13.1	NR	rs28441558-C	0.060035581	1E-7		1.1934913	[1.12-1.27]	Affymetrix, Illumina [20400945] (imputed)	N
644	chr17	7803117	7803118	rs28441558	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17p13.1	NR	rs28441558-C	NR	2E-21		1.165	[1.13-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
644	chr17	7803117	7803118	rs28441558	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	17p13.1	NR	rs28441558-C	NR	1E-8		1.18	NR	Affymetrix [at least 232408] (imputed)	N
644	chr17	7803117	7803118	rs28441558	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17p13.1	NR	rs28441558-C	0.0563	1E-10		0.03556498	[0.025-0.046] unit decrease	NR [~ 10000000] (imputed)	N
644	chr17	7803117	7803118	rs28441558	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17p13.1	CHD3	rs28441558-C	0.05	1E-16		1.16	[1.12-1.20]	Illumina [20370935] (imputed)	N
644	chr17	7803551	7803552	rs7224399	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	17p13.1		rs7224399-T	NR	1E-8		1.1825923	NR	Affymetrix [7846216] (imputed)	N
644	chr17	7803551	7803552	rs7224399	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17p13.1		rs7224399-T	NR	7E-7		1.1655011	[1.1-1.24]	Affymetrix [7846216] (imputed)	N
644	chr17	7806528	7806529	rs7222046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17p13.1		rs7222046-G	NR	8E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
644	chr17	7806528	7806529	rs7222046	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17p13.1	CHD3	rs7222046-?	NR	3E-9		0.411	[0.27-0.55] unit decrease	Affymetrix [11100000] (imputed)	N
644	chr17	7807437	7807438	rs117032670	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117032670-A	NR	4E-12		0.0704	[0.051-0.09] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7811614	7811615	rs9899375	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	17p13.1	CHD3	rs9899375-T	0.03	1E-8	(cohort study)	2.57	[1.86-3.55]	Affymetrix, Illumina [up to 2600000] (imputed)	N
644	chr17	7811614	7811615	rs9899375	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	17p13.1	CHD3	rs9899375-T	0.03	5E-9	(cohort study, AA)	3.3	[2.21-4.93]	Affymetrix, Illumina [~ 2600000] (imputed)	N
644	chr17	7814098	7814099	rs12950420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs12950420-C	NR	3E-10		0.0334	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
644	chr17	7825116	7825117	rs13341562	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p13.1		rs13341562-G	0.941	5E-12		0.019	[0.013-0.025] unit increase	NR [NR] (imputed)	N
644	chr17	7825573	7825574	rs9891006	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs9891006-G	NR	7E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
644	chr17	7825694	7825695	rs9912317	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17p13.1	NR	rs9912317-T	0.0457	2E-13		0.0198709	[0.015-0.025] unit decrease	NR [9732723] (imputed)	N
644	chr17	7859316	7859317	rs78671965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17p13.1		rs78671965-T	NR	2E-9		0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
645	chr17	7880564	7880565	rs76138007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs76138007-A	NR	2E-48		0.0696	[0.06-0.079] unit increase	Affymetrix [9000000] (imputed)	N
645	chr17	7880564	7880565	rs76138007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p13.1	NR	rs76138007-A	NR	2E-10		0.03	[0.021-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
645	chr17	7898459	7898460	rs11078724	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17p13.1	NR	rs11078724-G		6E-9		0.06	[0.041-0.079] unit increase	NR [NR]	N
645	chr17	7917251	7917252	rs143650826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs143650826-C	NR	8E-20		0.4087	[0.32-0.5] unit increase	Affymetrix [9000000] (imputed)	N
645	chr17	7929776	7929777	rs4338847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs4338847-A	NR	1E-12		0.0186	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
645	chr17	7937195	7937196	rs9905759	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17p13.1	NR	rs9905759-?	NR	6E-6		0.0421	[0.024-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
645	chr17	7937763	7937764	rs77581398	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs77581398-T	NR	3E-44		0.0797	[0.069-0.091] unit increase	Affymetrix [9000000] (imputed)	N
645	chr17	7952004	7952005	rs1804772	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	17p13.1	ALOX15B	rs1804772-?		4E-7		8.1	[3.61-18.18]	Illumina [NR] (imputed)	N
645	chr17	7961376	7961377	rs8073913	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALOX15B	5,365 Icelandic ancestry individuals	NA	17p13.1		rs8073913-G	0.3336	3E-14		0.152432	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
645	chr17	7961376	7961377	rs8073913	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	ALOX15B	rs8073913-A	0.6715625	2E-9	(ALOX15B, 12422_143_3)	0.15724733	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
645	chr17	7966918	7966919	rs58575433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs58575433-T	NR	5E-33		0.0864	[0.072-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
645	chr17	7971548	7971549	rs12601874	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.1	ALOX15B	rs12601874-?	NR	5E-6	(tryptophan)	0.19234568	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
645	chr17	7985861	7985862	rs57202603	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	17p13.1	NR	rs57202603-?		3E-6		22.9068	[21.6-24.21]	NR [NR] (imputed)	N
645	chr17	7994693	7994694	rs12051609	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	17p13.1	NR	rs12051609-A	0.5286	1E-5		0.1585	[0.088-0.229] unit decrease	Illumina [NR] (imputed)	N
646	chr17	8005846	8005847	rs117024145	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs117024145-G	NR	2E-12		0.0528	[0.038-0.067] unit increase	Affymetrix [9000000] (imputed)	N
646	chr17	8024217	8024218	rs4792250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs4792250-?	NR	2E-33				NR [~ 8900000] (imputed)	N
646	chr17	8027592	8027593	rs3027279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p13.1	Intergenic	rs3027279-T	0.5976	4E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
646	chr17	8031935	8031936	rs8067165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.1		rs8067165-?	NR	4E-12				NR [~ 8900000] (imputed)	N
646	chr17	8031935	8031936	rs8067165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17p13.1	Intergenic	rs8067165-C	0.3978	1E-9	(MTAG)	0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
646	chr17	8031935	8031936	rs8067165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p13.1	Intergenic	rs8067165-C	0.3978	9E-12	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
646	chr17	8031935	8031936	rs8067165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17p13.1	Intergenic	rs8067165-C	0.3976	1E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
646	chr17	8031935	8031936	rs8067165	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17p13.1	HES7	rs8067165-C	0.403	7E-12		0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
646	chr17	8036563	8036564	rs76539190	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p13.1	NR	rs76539190-?	NR	2E-6		4.72	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
646	chr17	8040150	8040151	rs58356259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p13.1	PER1	rs58356259-T	0.469756	2E-11		0.015067773	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
646	chr17	8040150	8040151	rs58356259	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17p13.1		rs58356259-T	0.4687	2E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
646	chr17	8054758	8054759	rs2585399	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	17p13.1		rs2585399-?	NR	4E-9		0.0164	unit increase	NR [NR]	N
646	chr17	8054859	8054860	rs2585398	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17p13.1	PER1	rs2585398-C	0.450505	2E-11		0.0129471	[0.0092-0.0167] unit increase	Affymetrix [NR] (imputed)	N
646	chr17	8057366	8057367	rs2518022	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17p13.1		rs2518022-T	0.08555	2E-16		0.032	[0.024-0.04] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
646	chr17	8057366	8057367	rs2518022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17p13.1		rs2518022-?	NR	5E-15				NR [~ 8900000] (imputed)	N
646	chr17	8064082	8064083	rs1061032	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	17p13.1	VAMP2	rs1061032-T	0.094	2E-23		1.0634		Affymetrix [11880941] (imputed)	N
646	chr17	8064082	8064083	rs1061032	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17p13.1	VAMP2	rs1061032-T	0.094	2E-23		1.0665189		Affymetrix [11880941] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	6E-13	(LRG1)	0.06966	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	5E-9	(SERPINA1)	2.847	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	3E-8	(FUCA1)	0.02664	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	2E-17	(ORM1)	1.375	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	2E-13	(FGB)	1.365	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	1E-15	(FGG)	0.9222	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8070123	8070125	rs1157610362	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs1157610362-C	0.01045	1E-13	(FGA)	0.564	NR unit increase	Illumina [1671387] (imputed)	N
646	chr17	8073096	8073097	rs12944041	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	17p13.1	TMEM107	rs12944041-G	0.449877	7E-9	(EA)	0.00700048	[0.0046-0.0094] unit increase	Affymetrix [~ 8800000] (imputed)	N
646	chr17	8078764	8078765	rs8069739	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17p13.1	TMEM107	rs8069739-T	0.32	2E-11		0.1082	[0.077-0.14] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
646	chr17	8105051	8105052	rs35546597	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety disorders	28,525 European ancestry cases, 5,664 African American cases, 163,731 European ancestry controls, 26,410 African American controls	NA	17p13.1	AURKB	rs35546597-?	NR	2E-8	(EA)			Affymetrix [at least 723305] (imputed)	N
646	chr17	8107978	8107979	rs7503353	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p13.1	AURKB	rs7503353-G	0.467984	8E-12		0.0135036	[0.0096-0.0174] unit increase	Affymetrix [NR] (imputed)	N
646	chr17	8109597	8109598	rs6503091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17p13.1		rs6503091-?	NR	8E-9				NR [~ 8900000] (imputed)	N
646	chr17	8124563	8124563	rs144382588	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17p13.1	NR	rs144382588-A	0.0825	5E-8		0.0254911	[0.016-0.035] unit increase	Affymetrix [3505788] (imputed)	N
646	chr17	8125540	8125541	rs12938531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17p13.1		rs12938531-G	NR	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
647	chr17	8130866	8130867	rs3027247	22658654	Chung SJ	2012-05-30	Parkinsonism Relat Disord	Genomic determinants of motor and cognitive outcomes in Parkinson's disease.	Parkinson's disease (motor and cognition)	443 European ancestry cases	NA	17p13.1	C17orf68	rs3027247-?	NR	9E-6	(cognitive outcome)	1.89	[1.41-2.50]	NR [198345]	N
647	chr17	8134274	8134275	rs7503199	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	17p13.1	NR	rs7503199-C	NR	7E-9		0.81	unit increase	Affymetrix [14661600] (imputed)	N
647	chr17	8136091	8136092	rs3027234	23001564	Mangino M	2012-09-25	Hum Mol Genet	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	17p13.1	CTC1	rs3027234-T	0.1794	2E-8		0.0573	[0.036-0.079] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
647	chr17	8144922	8144923	rs748812224	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17p13.1		rs748812224-C	0.64152	9E-6		0.031065	[0.017-0.045] unit increase	Affymetrix [15580782] (imputed)	N
647	chr17	8144922	8144923	rs748812224	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17p13.1		rs748812224-C	0.64152	6E-7		0.035495	[0.022-0.049] unit increase	Affymetrix [15580782] (imputed)	N
647	chr17	8152239	8152240	rs7221547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p13.1	PFAS	rs7221547-G	0.857017	4E-13		0.02332822	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr17	8157309	8157310	rs9891699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17p13.1		rs9891699-T	NR	2E-18		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
647	chr17	8157309	8157310	rs9891699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p13.1	PFAS	rs9891699-T	0.800055	2E-20		0.025769986	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
647	chr17	8157309	8157310	rs9891699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17p13.1	PFAS	rs9891699-C	0.800053	1E-18		0.0240403	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
647	chr17	8157309	8157310	rs9891699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p13.1	PFAS	rs9891699-T	0.800061	3E-11		0.019185005	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr17	8157309	8157310	rs9891699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.1		rs9891699-?	NR	4E-18				NR [~ 8900000] (imputed)	N
647	chr17	8158272	8158273	rs6503094	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17p13.1	PFAS	rs6503094-A	0.1884	2E-6		0.0083	[0.005-0.0116] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
647	chr17	8158272	8158273	rs6503094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs6503094-G	0.756528	2E-29				Affymetrix, Illumina [21126107] (imputed)	N
647	chr17	8158272	8158273	rs6503094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17p13.1	NR	rs6503094-G	0.800598	8E-23		0.024593	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
647	chr17	8161148	8161149	rs4791641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17p13.1		rs4791641-T	NR	2E-16		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
647	chr17	8161148	8161149	rs4791641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p13.1	PFAS	rs4791641-T	0.503083	3E-20		0.02031563	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr17	8161148	8161149	rs4791641	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p13.1	PFAS	rs4791641-T		1E-12		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
647	chr17	8161148	8161149	rs4791641	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	17p13.1	PFAS	rs4791641-T	0.543	1E-7	(Trans-ethnic initial)	0.0202	[0.013-0.027] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
647	chr17	8161148	8161149	rs4791641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17p13.1	PFAS	rs4791641-T	0.502	5E-11		0.02332721	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
647	chr17	8161148	8161149	rs4791641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17p13.1	PFAS	rs4791641-T	0.502	1E-10		0.02285043	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
647	chr17	8161148	8161149	rs4791641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17p13.1	PFAS	rs4791641-T	0.502	5E-17		0.02955392	[0.023-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
647	chr17	8161148	8161149	rs4791641	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	LDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	17p13.1	PFAS	rs4791641-C	NR	1E-8		0.021	[0.013-0.029] unit increase	Affymetrix [at least 370268] (imputed)	N
647	chr17	8162819	8162820	rs10468482	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	17p13.1	PFAS	rs10468482-C	0.8006	5E-9		0.0253879	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
647	chr17	8164351	8164352	rs56309584	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	17p13.1	PFAS	rs56309584-C	0.3146	9E-6	(EA)			Illumina [4404269] (imputed)	N
647	chr17	8167961	8167962	rs78296773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17p13.1	Intergenic	rs78296773-T	0.2245	6E-15	(MTAG)	0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
647	chr17	8167961	8167962	rs78296773	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17p13.1	Intergenic	rs78296773-G	0.7755	2E-14		0.0179	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
647	chr17	8172505	8172506	rs62637606	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	17p13.1	NA	rs62637606-G	0.0511	2E-6		5.81	[2.656-12.71]	Illumina [243345]	N
647	chr17	8179723	8179726	rs139562989	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	17p13.1	NR	rs139562989-?	0.4953	5E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
647	chr17	8202619	8202620	rs11653623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p13.1		rs11653623-?	NR	4E-8				NR [~ 8900000] (imputed)	N
647	chr17	8214377	8214380	rs3217198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p13.1	ARHGEF15	rs3217198-C	0.049037	3E-12		0.036685217	[0.026-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr17	8214426	8214427	rs9908765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p13.1		rs9908765-A	NR	4E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
647	chr17	8214426	8214427	rs9908765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17p13.1		rs9908765-A	NR	3E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
647	chr17	8214426	8214427	rs9908765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1	ARHGEF15	rs9908765-A	0.492039	3E-25		0.023318969	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr17	8214426	8214427	rs9908765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p13.1		rs9908765-?	NR	4E-15				NR [~ 8900000] (imputed)	N
647	chr17	8216467	8216468	rs871841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p13.1	ARHGEF15	rs871841-C	NR	2E-9		0.0168543	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
647	chr17	8216467	8216468	rs871841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p13.1	ARHGEF15	rs871841-C	NR	8E-10		0.0173104	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
647	chr17	8216467	8216468	rs871841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p13.1	ARHGEF15	rs871841-C	0.498004	2E-20		0.020527858	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
647	chr17	8216467	8216468	rs871841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p13.1	ARHGEF15	rs871841-C	0.498008	2E-17		0.019629247	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
647	chr17	8216467	8216468	rs871841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs871841-C	0.565545	8E-36				Affymetrix, Illumina [24558453] (imputed)	N
647	chr17	8216467	8216468	rs871841	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p13.1	NR	rs871841-C	0.501726	1E-37		0.023961	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
647	chr17	8216467	8216468	rs871841	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p13.1	ARHGEF15	rs871841-C		5E-15		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
647	chr17	8216467	8216468	rs871841	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.1	ARHGEF15	rs871841-T	0.4615	2E-8		0.0148	[0.0097-0.0199] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
647	chr17	8216467	8216468	rs871841	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17p13.1	NR	rs871841-C	NR	6E-16		0.0150379725	[0.011-0.019] unit increase	Illumina [242289]	N
647	chr17	8216467	8216468	rs871841	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	17p13.1	NR	rs871841-C	0.5	8E-8		0.016	unit increase	Illumina [242289]	N
647	chr17	8219477	8219478	rs2270445	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p13.1	NR	rs2270445-G	0.48695999999999995	5E-10		0.0171622	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
647	chr17	8219477	8219478	rs2270445	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p13.1	ARHGEF15	rs2270445-A	0.4596	2E-8		0.0153	[0.01-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
647	chr17	8219477	8219478	rs2270445	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17p13.1	NR	rs2270445-A	0.5119	1E-9		0.0109	[0.0074-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
647	chr17	8222776	8222777	rs76317718	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	17p13.1	ARHGEF15, CTC1, PFAS	rs76317718-G	NR	2E-7	(Japanese)	1.19429	[1.11666-1.27731]	Illumina [at least 6195093] (imputed)	N
647	chr17	8241189	8241190	rs6503102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	17p13.1	NR	rs6503102-A	0.62812	3E-10		0.025914	[0.018-0.034] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
647	chr17	8245144	8245145	rs8070734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	17p13.1		rs8070734-T	0.371711	2E-12		0.0263184	[0.019-0.034] unit decrease	Illumina [13477028] (imputed)	N
647	chr17	8245144	8245145	rs8070734	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	17p13.1	ODF4	rs8070734-?	NR	3E-12		0.03053	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
648	chr17	8257612	8257613	rs4792346	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	17p13.1		rs4792346-C	0.27	3E-6		0.51	unit decrease	Affymetrix [NR] (imputed)	N
648	chr17	8257980	8257981	rs8074318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p13.1		rs8074318-?	NR	2E-10				NR [~ 8900000] (imputed)	N
648	chr17	8382183	8382184	rs1971300	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	17p13.1		rs1971300-G	0.585648	8E-9		0.040073	[0.026-0.054] decrease	Affymetrix [NR]	N
649	chr17	8390732	8390733	rs3826463	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p13.1		rs3826463-A	0.37	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
649	chr17	8393978	8393979	rs2270743	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p13.1		rs2270743-T	0.37	9E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
649	chr17	8435815	8435816	rs117688348	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (delayed memory) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17p13.1		rs117688348-C	0.02	2E-8				NR [NR] (imputed)	N
650	chr17	8595093	8595094	rs7213402	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	17p13.1	MYH10, CCDC42	rs7213402-T	0.25	6E-7		7.167		Affymetrix [757439]	N
650	chr17	8599006	8599007	rs4791735	29058377	Sanchez-Roige S	2017-10-23	Addict Biol	Genome-wide association study of alcohol use disorder identification test (AUDIT) scores in 20 328 research participants of European ancestry.	Alcohol consumption over the past year	20,328 European ancestry individuals	NA	17p13.1	NR	rs4791735-T	0.276	1E-6		0.015	[0.021-0.009] unit decrease	Illumina [13280794] (imputed)	N
650	chr17	8620628	8620629	rs2101938	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	17p13.1	NR	rs2101938-?	NR	1E-6				Illumina [540916] (imputed)	N
650	chr17	8621356	8621357	rs560436873	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p13.1	NR	rs560436873-A	0.997931	6E-17		0.134555	[0.1-0.17] unit increase	Affymetrix [16585854] (imputed)	N
650	chr17	8621356	8621357	rs560436873	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p13.1	NR	rs560436873-A	0.997931	9E-10		0.118661	[0.083-0.154] unit increase	Affymetrix [16585866] (imputed)	N
650	chr17	8626356	8626357	rs4791746	27936112	Kalsi G	2016-12-09	PLoS One	Genome-Wide Association of Heroin Dependence in Han Chinese.	Heroin dependence	370 Han Chinese ancestry cases, 134 Han Chinese ancestry controls		17p13.1	NR	rs4791746-?	0.6133	2E-7		2.15		Illumina [4009606] (imputed)	N
650	chr17	8644853	8644854	rs2288156	27936112	Kalsi G	2016-12-09	PLoS One	Genome-Wide Association of Heroin Dependence in Han Chinese.	Heroin dependence	370 Han Chinese ancestry cases, 134 Han Chinese ancestry controls		17p13.1	CCDC42	rs2288156-?	0.8271	3E-7		2.5608194		Illumina [4009606] (imputed)	N
651	chr17	8667748	8667749	rs8079117	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	17p13.1	NR	rs8079117-A	0.004	2E-6		8.98	[3.63-22.23]	Illumina [7959153] (imputed)	N
651	chr17	8674141	8674142	rs11317767	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	17p13.1	SPDYE4	rs11317767-G	NR	6E-7	(males)	0.087	[0.054-0.12] unit increase	Illumina [7531543] (imputed)	N
652	chr17	8784360	8784361	rs4791765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p13.1		rs4791765-?	NR	9E-11				NR [~ 8900000] (imputed)	N
652	chr17	8788750	8788751	rs114619297	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17p13.1	NR	rs114619297-?	NR	5E-6	(EA)	1.3777	[0.79-1.96] unit decrease	Illumina [up to 11892802] (imputed)	N
652	chr17	8790073	8790074	rs11078770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17p13.1	PIK3R5	rs11078770-A	0.311527	4E-12		0.016574992	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr17	8790073	8790074	rs11078770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p13.1	PIK3R5	rs11078770-A	0.311506	4E-11		0.01577035	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
652	chr17	8790073	8790074	rs11078770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs11078770-A	0.30445	9E-12				Affymetrix, Illumina [19872809] (imputed)	N
652	chr17	8790073	8790074	rs11078770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17p13.1	NR	rs11078770-A	0.310657	2E-13		0.015874	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
652	chr17	8800307	8800308	rs411268	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p13.1	C17orf38	rs411268-?	NR	3E-6	(LPE 20:4)	0.16663389	[0.097-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
652	chr17	8809024	8809025	rs61753147	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	17p13.1	PIK3R5	rs61753147-A	0.035	5E-6		5.265	[2.58-10.74]	Illumina [7585874] (imputed)	N
652	chr17	8841139	8841140	rs7218886	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	17p13.1	PIK3R5	rs7218886-T	0.844	4E-10		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
652	chr17	8845982	8845983	rs9911033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p13.1	PIK3R5	rs9911033-C	0.788066	8E-10		0.01673255	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
652	chr17	8864689	8864690	rs9303234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	17p13.1		rs9303234-G	NR	3E-9		0.0671	[0.045-0.089] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
652	chr17	8864689	8864690	rs9303234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	17p13.1		rs9303234-?	NR	5E-8				NR [~ 8900000] (imputed)	N
653	chr17	8914692	8914693	rs2872615	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	17p13.1	NTN1	rs2872615-A	0.52	9E-12		1.2195122	[NR]	Illumina [803202]	N
653	chr17	8916467	8916468	rs11078776	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	NTN1	rs11078776-A	0.547605	3E-13		0.0136387	[0.01-0.0173] unit decrease	NR [13737936] (imputed)	N
653	chr17	8916467	8916468	rs11078776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs11078776-?	NR	6E-11				NR [~ 8900000] (imputed)	N
653	chr17	8930079	8930080	rs940850	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	17p13.1	NR	rs940850-T	NR	2E-6		0.7505	NR	Illumina [at least 560000] (imputed)	N
653	chr17	8930219	8930232	rs11273201	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	17p13.1	NTN1	rs11273201-?	NR	4E-8		0.04	[0.026-0.054] unit decrease	Illumina [at least 589945] (imputed)	N
653	chr17	8930224	8930225	rs7406226	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	17p13.1	NR	rs7406226-?		6E-6		0.66	[0.56-0.79]	Illumina [539473] (imputed)	N
653	chr17	8932081	8932082	rs4791331	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	17p13.1	NR	rs4791331-T	NR	3E-9		0.0139	NR unit decrease	NR [7259579]	N
653	chr17	8932118	8932119	rs4791774	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17p13.1	NTN1	rs4791774-A	0.463908	4E-8		5.49	z score increase	NR [10847151] (imputed)	N
653	chr17	8932118	8932119	rs4791774	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	17p13.1	NTN1	rs4791774-G	NR	5E-19		1.56	[1.42-1.72]	Affymetrix [842556]	N
653	chr17	8933193	8933194	rs7223668	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p13.1	NTN1	rs7223668-A	0.4712	2E-11		0.0127	[0.009-0.0164] unit decrease	Affymetrix [18391927] (imputed)	N
653	chr17	8936363	8936364	rs36047638	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	17p13.1	NR	rs36047638-?	NR	4E-9		1.55	[1.44-1.66]	Illumina [539000] (imputed)	N
653	chr17	8938470	8938471	rs113715580	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17p13.1	NTN1, STX8	rs113715580-?		3E-9				NR [7428630] (imputed)	N
653	chr17	8943062	8943063	rs9911652	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17p13.1	NTN1	rs9911652-?	NR	3E-8	(Asian)	1.56	[1.35-1.81]	Illumina [6090031] (imputed)	N
653	chr17	8943928	8943929	rs8076457	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	17p13.1	NR	rs8076457-?	NR	6E-10		0.3157	[0.22-0.42] unit increase	NR [7618724] (imputed)	N
653	chr17	8943928	8943929	rs8076457	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	17p13.1	NR	rs8076457-?	NR	2E-7	(Meta-ALL, NSCL/P)			NR [497084]	N
653	chr17	8947707	8947708	rs12944377	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	17p13.1	NR	rs12944377-?	NR	4E-8		0.8	[0.76-0.85]	Illumina [539000] (imputed)	N
653	chr17	8947707	8947708	rs12944377	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	17p13.1	NTN1	rs12944377-?	NR	8E-10	(EA)	1.4084507		Illumina [6090031] (imputed)	N
653	chr17	8947707	8947708	rs12944377	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	17p13.1	NTN1	rs12944377-?	NR	1E-16		1.3513513	[1.22-1.49] (GENEVA cohort)	Illumina [6090031] (imputed)	N
653	chr17	8947707	8947708	rs12944377	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17p13.1	NTN1	rs12944377-?	NR	8E-21		1.5151515	[1.35-1.72] (GENEVA cohort)	Illumina [6090031] (imputed)	N
653	chr17	8947707	8947708	rs12944377	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17p13.1	NTN1	rs12944377-?	NR	5E-10	(EA)	1.4925373	[1.32-1.67]	Illumina [6090031] (imputed)	N
653	chr17	8948103	8948104	rs16957821	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	17p13.1	NTN1	rs16957821-G		9E-10		0.25	[0.17-0.33] unit increase	Illumina [NR] (imputed)	N
653	chr17	8948540	8948541	rs34094467	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17p13.1		rs34094467-?	NR	3E-10				NR [9705931] (imputed)	N
653	chr17	8949407	8949408	rs28396760	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	17p13.1	NR	rs28396760-?		8E-7		1.67	[1.36-2.05]	Illumina [539473] (imputed)	N
653	chr17	8952611	8952612	rs79795728	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	17p13.1		rs79795728-?	NR	3E-9		2.154	[1.44-2.87] unit decrease	Affymetrix [NR] (imputed)	N
653	chr17	8964003	8964004	rs34380567	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs34380567-?	NR	7E-11				NR [NR]	N
653	chr17	8964003	8964004	rs34380567	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs34380567-?	NR	4E-11				NR [NR]	N
653	chr17	8965217	8965218	rs8082460	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs8082460-?	NR	6E-11				NR [NR]	N
653	chr17	8965271	8965272	rs8081460	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	17p13.1	Intergenic	rs8081460-A		1E-6		0.074	[0.045-0.103] unit decrease	Affymetrix [7207648] (imputed)	N
653	chr17	8965273	8965274	rs8068691	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs8068691-?	NR	1E-10				NR [NR]	N
653	chr17	8965550	8965551	rs8081823	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs8081823-?	NR	6E-11				NR [NR]	N
653	chr17	8967066	8967067	rs12449664	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	17p13.1	NTN1	rs12449664-?	NR	1E-6	(Cases)	0.15	[0.091-0.209] unit increase	Illumina [6900000] (imputed)	N
653	chr17	8968499	8968500	rs9910696	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.1	NTN1	rs9910696-?		1E-6				Illumina [4322238] (imputed)	N
653	chr17	8968499	8968500	rs9910696	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.1	NTN1	rs9910696-?		2E-7				Illumina [4322238] (imputed)	N
653	chr17	8968499	8968500	rs9910696	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p13.1	NTN1	rs9910696-?		7E-6				Illumina [4322238] (imputed)	N
653	chr17	8969491	8969492	rs6503175	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17p13.1		rs6503175-?	NR	5E-11				NR [NR]	N
653	chr17	8984021	8984022	rs72809986	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN1	5,364 Icelandic ancestry individuals	NA	17p13.1		rs72809986-A	0.157	3E-74		0.424257	[0.38-0.47] unit decrease	Illumina [7506463] (imputed)	N
653	chr17	8986396	8986397	rs72809988	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NTN1	rs72809988-G	0.833125	5E-53	(NTN1, 9013_60_3)	0.47008753	[0.41-0.53] unit increase	Illumina [> 1000000] (imputed)	N
653	chr17	8986396	8986397	rs72809988	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	NTN1	rs72809988-A	0.11	2E-52	(Netrin-1, NTN1.6649.51.3)	0.58	[0.5-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
653	chr17	8993132	8993133	rs10468483	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN1	5,365 Icelandic ancestry individuals	NA	17p13.1		rs10468483-C	0.1536	9E-84		0.457035	[0.41-0.5] unit decrease	Illumina [7506463] (imputed)	N
653	chr17	8993132	8993133	rs10468483	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	NTN1	rs10468483-T	0.83953125	7E-48	(NTN1, 6649_51_3)	0.45682058	[0.4-0.52] unit increase	Illumina [> 1000000] (imputed)	N
653	chr17	9001240	9001241	rs9913564	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	17p13.1	Intergenic	rs9913564-?	NR	8E-6		1.368	[NR]	Affymetrix [492217] (imputed)	N
653	chr17	9032273	9032274	rs12938040	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	NTN1	rs12938040-G	0.960081	5E-16		0.0384859	[0.029-0.048] unit decrease	NR [13737936] (imputed)	N
653	chr17	9032273	9032274	rs12938040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs12938040-?	NR	5E-12				NR [~ 8900000] (imputed)	N
653	chr17	9032273	9032274	rs12938040	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs12938040-?	NR	9E-13		0.0366498	[0.026-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
654	chr17	9075743	9075744	rs144460277	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17p13.1	NR	rs144460277-?	NR	6E-7	(Native Hawaiian)	1.2032	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
654	chr17	9083630	9083631	rs9906834	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN1	5,364 Icelandic ancestry individuals	NA	17p13.1		rs9906834-C	0.4191	2E-64		0.293375	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
654	chr17	9083752	9083753	rs9908810	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTN1	5,365 Icelandic ancestry individuals	NA	17p13.1		rs9908810-G	0.419	9E-65		0.295628	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
654	chr17	9086707	9086708	rs62068199	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p13.1	NR	rs62068199-C	0.4	3E-46	(Netrin-1, NTN1.6649.51.3)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
654	chr17	9087164	9087165	rs16958002	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	17p13.1	NR	rs16958002-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
654	chr17	9090223	9090224	rs3785982	23319801	Rafiq S	2013-01-14	Cancer Res	Identification of inherited genetic variations influencing prognosis in early-onset breast cancer.	Breast cancer (prognosis)	536 European ancestry early-onset cases	1,516 European ancestry early-onset cases	17p13.1	NTN1	rs3785982-?	0.12	8E-6		1.4	[1.21-1.62]	Illumina [487496]	N
654	chr17	9137152	9137153	rs3786003	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17p13.1	NR	rs3786003-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
654	chr17	9140090	9140091	rs9909240	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17p13.1	NR	rs9909240-?		4E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
654	chr17	9141322	9141323	rs3744656	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p13.1	NR	rs3744656-G	0.1584	1E-17				NR [9056863] (imputed)	N
654	chr17	9141322	9141323	rs3744656	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	17p13.1		rs3744656-?	NR	6E-13				NR [9705931] (imputed)	N
654	chr17	9142413	9142414	rs145787127	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	17p13.1	NTN1	rs145787127-A	0.016	3E-8		7.366	[3.633-14.93]	Illumina [7585874] (imputed)	N
654	chr17	9142845	9142846	rs56235417	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	NTN1	rs56235417-G	0.83846	1E-36		0.031718	[0.027-0.037] unit increase	NR [13737936] (imputed)	N
654	chr17	9142845	9142846	rs56235417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs56235417-?	NR	2E-34				NR [~ 8900000] (imputed)	N
654	chr17	9142845	9142846	rs56235417	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs56235417-?	NR	5E-33		0.0327306	[0.027-0.038] unit increase	Affymetrix [20259828] (imputed)	N
654	chr17	9142845	9142846	rs56235417	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	NTN1	rs56235417-G	0.838121	8E-11		0.0296107	[0.021-0.039] unit increase	NR [17166351] (imputed)	N
654	chr17	9142845	9142846	rs56235417	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17p13.1	NTN1	rs56235417-G	0.836668	4E-7	(men)	0.0365955	[0.023-0.05] unit increase	NR [17166351] (imputed)	N
654	chr17	9146752	9146752	rs61409174	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17p13.1	NR	rs61409174-?		3E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
654	chr17	9149785	9149786	rs56281058	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p13.1		rs56281058-T	0.17	2E-15		7.94	z score increase	Affymetrix [9061022] (imputed)	N
654	chr17	9149785	9149786	rs56281058	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17p13.1	NR	rs56281058-?		4E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
654	chr17	9151753	9151754	rs80100171	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p13.1		rs80100171-A	0.18	2E-40		13.31	z score increase	Affymetrix [9061022] (imputed)	N
654	chr17	9154854	9154855	rs78068712	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.1		rs78068712-G	0.19	2E-13		7.33	z score increase	Affymetrix [9061022] (imputed)	N
654	chr17	9154854	9154855	rs78068712	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p13.1	NR	rs78068712-G	0.1872	1E-12				NR [9056863] (imputed)	N
654	chr17	9154854	9154855	rs78068712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs78068712-?	NR	3E-9				NR [~ 8900000] (imputed)	N
654	chr17	9157061	9157062	rs8071027	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p13.1	NR	rs8071027-C	0.3358	7E-9				NR [9056863] (imputed)	N
655	chr17	9188597	9188598	rs75023836	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	17p13.1	NR	rs75023836-T	NR	2E-6	(PM %)	0.3619	[NR] unit decrease	Illumina [1190033]	N
655	chr17	9199281	9199282	rs190320197	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p13.1	STX8	rs190320197-T	0.0251571192865291	7E-7	(G_Desulfovibrio_HB)	0.869832	[0.53-1.21] unit increase	Illumina [7711310] (imputed)	N
655	chr17	9227662	9227663	rs16958141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs16958141-C	0.03833	7E-9	(ADK)	0.1094	NR unit decrease	Illumina [1671387] (imputed)	N
655	chr17	9248604	9248605	rs112190082	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	17p13.1	STX8	rs112190082-G		4E-7	(women)	0.2	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
655	chr17	9264727	9264728	rs8070753	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	17p13.1	NR	rs8070753-?		8E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
656	chr17	9311555	9311556	rs17206871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17p13.1		rs17206871-G	NR	3E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
656	chr17	9312851	9312852	rs72816179	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17p13.1	NR	rs72816179-?	NR	7E-6		0.288594	[0.16-0.41] unit increase	NR [13958389] (imputed)	N
656	chr17	9337244	9337245	rs11078801	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX8	5,361 Icelandic ancestry individuals	NA	17p13.1		rs11078801-C	0.2069	5E-12		0.154499	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
656	chr17	9346529	9346530	rs60864581	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p13.1	STX8	rs60864581-C	0.7884375	1E-7	(STX8, 10903_50_3)	0.15646867	[0.098-0.215] unit decrease	Illumina [> 1000000] (imputed)	N
656	chr17	9349009	9349010	rs7214842	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		17p13.1	STX8	rs7214842-?	NR	1E-6	(AA)	0.024	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
656	chr17	9369736	9369737	rs72818042	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia A sp900066145 abundance in stool	5,959 Finnish ancestry individuals	NA	17p13.1		rs72818042-A	0.080534	3E-8		0.0847875	[0.055-0.115] unit increase	Illumina [7980478] (imputed)	N
656	chr17	9387452	9387453	rs2168858	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	17p13.1	NR	rs2168858-?	0.58	5E-6	(Mexican, additive )	1.4705882	[1.25-1.72]	Affymetrix [NR]	N
658	chr17	9582213	9582214	rs6503238	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17p13.1	USP43	rs6503238-T	0.756709	7E-27		0.00286797	[0.0023-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
658	chr17	9582213	9582214	rs6503238	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17p13.1	USP43	rs6503238-T	0.75	3E-17		8.43	z-score increase	Affymetrix [4311822] (imputed)	N
658	chr17	9587431	9587432	rs7219025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17p13.1		rs7219025-A	NR	1E-18		0.0241	[0.019-0.029] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
658	chr17	9588449	9588450	rs8066941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p13.1	NR	rs8066941-T	0.761664	6E-40		0.0121549	[0.01-0.014] unit increase	Affymetrix [16582909] (imputed)	N
658	chr17	9588449	9588450	rs8066941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p13.1	NR	rs8066941-T	0.761367	8E-33		0.0156841	[0.013-0.018] unit increase	Affymetrix [16582621] (imputed)	N
658	chr17	9588449	9588450	rs8066941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p13.1	NR	rs8066941-T	0.761664	3E-31		0.0122453	[0.01-0.014] unit increase	Affymetrix [16582965] (imputed)	N
658	chr17	9588449	9588450	rs8066941	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p13.1	NR	rs8066941-T	0.761367	2E-27		0.0154383	[0.013-0.018] unit increase	Affymetrix [16582614] (imputed)	N
658	chr17	9590355	9590356	rs7220671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p13.1	NR	rs7220671-C	NR	2E-23		0.029	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
658	chr17	9590355	9590356	rs7220671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17p13.1	NR	rs7220671-C	NR	1E-17		0.0236	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
658	chr17	9613603	9613604	rs67414899	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17p13.1	USP43	rs67414899-C	0.13	4E-6		0.048	[0.028-0.068] unit decrease	Affymetrix [7947838] (imputed)	N
658	chr17	9632658	9632659	rs148793246	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17p13.1	NR	rs148793246-?	NR	5E-7		0.66766	[0.41-0.93] unit increase	NR [13958389] (imputed)	N
659	chr17	9703382	9703383	rs2315578	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals	NA	17p13.1	NR	rs2315578-C	NR	4E-6		5.39	[NR]	Illumina [NR] (imputed)	N
659	chr17	9719990	9719992	rs138253180	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	17p13.1		rs138253180-?	NR	1E-7		0.3057261	[0.19-0.42] unit decrease	Illumina [9875426] (imputed)	N
659	chr17	9719990	9719992	rs138253180	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	17p13.1		rs138253180-?	NR	6E-6		0.2912772	[0.17-0.42] unit decrease	Illumina [9842460] (imputed)	N
659	chr17	9779493	9779494	rs72822195	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GLP2R	rs72822195-?	NR	1E-8	(female)	1.34007	[NR] unit decrease	Affymetrix [NR] (imputed)	N
659	chr17	9779768	9779769	rs9911768	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p13.1	NR	rs9911768-A	0.01742	3E-9	(MAT2A)	0.02578	NR unit increase	Illumina [1671387] (imputed)	N
659	chr17	9780386	9780387	rs78761021	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	17p13.1	GLP2R	rs78761021-G	0.34	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
659	chr17	9785186	9785187	rs7222481	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17p13.1	GLP2R	rs7222481-C	0.3238	1E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
659	chr17	9787844	9787845	rs17810376	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p13.1	NR	rs17810376-G	0.2974	3E-9		0.0279	[0.019-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
659	chr17	9787957	9787958	rs7219033	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p13.1	NR	rs7219033-G	0.6861	5E-9		0.0288	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
659	chr17	9791779	9791780	rs77902029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p13.1		rs77902029-A	NR	4E-10		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
659	chr17	9792767	9792768	rs17681684	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	17p13.1	GLP2R	rs17681684-A	0.33	1E-9		0.055	[0.037-0.073] unit increase	Illumina [at least 81396]	N
659	chr17	9793416	9793417	rs55789050	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	17p13.1	GLP2R	rs55789050-T	0.333	6E-14		0.027	[0.034-0.02] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
659	chr17	9826565	9826565	rs11413957	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	17p13.1		rs11413957-?	NR	7E-6		0.1991879	[0.11-0.29] unit decrease	Illumina [9939936] (imputed)	N
660	chr17	9838604	9838605	rs8072109	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs8072109-A	0.593576	5E-10		0.0573195	[0.039-0.076] decrease	Affymetrix [11014269] (imputed)	N
660	chr17	9840500	9840501	rs10852918	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	17p13.1	NR	rs10852918-G		8E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
660	chr17	9840500	9840501	rs10852918	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	17p13.1	GAS7	rs10852918-?	NR	5E-12		0.0892	[0.064-0.114] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
660	chr17	9840500	9840501	rs10852918	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	17p13.1	GAS7	rs10852918-A	0.589	9E-15		0.1	[0.075-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
660	chr17	9842263	9842264	rs8064739	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	17p13.1	GAS7	rs8064739-A	0.59	1E-11				Affymetrix, Illumina [8002429] (imputed)	N
660	chr17	9842263	9842264	rs8064739	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	17p13.1	GAS7	rs8064739-C	0.41	3E-7		1.0869565	NR	Affymetrix [at least 8002429] (imputed)	N
660	chr17	9858011	9858012	rs3786107	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	17p13.1	NR	rs3786107-G		6E-6		0.2358	[0.13-0.34] SD units decrease	NR [10700000] (imputed)	N
660	chr17	9875204	9875205	rs3786094	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	17p13.1	GAS7	rs3786094-C	0.422	6E-6	(Recessive model)	1.531	[1.206-1.944]	Illumina [733202]	N
661	chr17	9983333	9983334	rs7214058	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17p13.1	GAS7	rs7214058-?	NR	6E-9		0.011757166	[0.0078-0.0157] unit increase	NR [7306098]	N
661	chr17	10006769	10006770	rs11651314	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	17p13.1	NR	rs11651314-?	NR	1E-18		8.809	NR z score increase	Illumina [at least 830937] (imputed)	N
661	chr17	10016278	10016279	rs72809349	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	17p13.1	NR	rs72809349-T		2E-10		0.15	[0.11-0.19] unit increase	NR [NR]	N
661	chr17	10019631	10019632	rs55877232	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	17p13.1		rs55877232-?	NR	9E-6		0.06959355	[0.039-0.1] unit decrease	Illumina [9939936] (imputed)	N
661	chr17	10022442	10022443	rs8066210	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	17p13.1	GAS7	rs8066210-G	0.30	5E-6	(female)	1.38	[0.79-1.97] unit decrease	Illumina [6380737] (imputed)	N
661	chr17	10031089	10031090	rs12150284	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	17p13.1	GAS7	rs12150284-T	NR	4E-16		0.818976	[0.77-0.87]	Illumina [NR] (imputed)	N
661	chr17	10031089	10031090	rs12150284	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	17p13.1	GAS7	rs12150284-T	0.368	7E-19		0.243	[0.19-0.3] mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
661	chr17	10031089	10031090	rs12150284	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	17p13.1	GAS7	rs12150284-T	0.37337	9E-12				Affymetrix [28000000] (imputed)	N
661	chr17	10031089	10031090	rs12150284	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.1	GAS7	rs12150284-C	0.6287	5E-77		0.2645	[0.24-0.29] unit increase	Affymetrix [~ 11900000] (imputed)	N
661	chr17	10031089	10031090	rs12150284	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	17p13.1	GAS7	rs12150284-A	0.35	2E-6		0.62	[0.33-0.91] mmHg decrease	Illumina [466573]	N
661	chr17	10031182	10031183	rs9913911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	17p13.1		rs9913911-G	NR	9E-21		0.1322	[0.1-0.16] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
661	chr17	10031182	10031183	rs9913911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	17p13.1		rs9913911-G	0.584254125	5E-8		0.09243553	[0.059-0.126] unit decrease	Illumina [13429686] (imputed)	N
661	chr17	10031182	10031183	rs9913911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	17p13.1		rs9913911-G	NR	3E-25		0.1172	[0.095-0.139] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	17p13.1	GAS7	rs9913911-A	NR	2E-19		1.15696	[1.13-1.19]	Illumina [NR] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	17p13.1	GAS7	rs9913911-A	NR	5E-21		1.16102	[1.13-1.19]	Illumina [NR] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	17p13.1	GAS7	rs9913911-A	NR	1E-6		1.10241	[1.06-1.14]	Illumina [11610548] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	17p13.1	GAS7	rs9913911-A	NR	2E-73		0.137	unit increase	Illumina [15409056] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	17p13.1	GAS7	rs9913911-A	NR	6E-33		1.17433	[1.15-1.2]	Affymetrix, Illumina [14822926] (imputed)	N
661	chr17	10031182	10031183	rs9913911	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	17p13.1		rs9913911-A	0.624704	8E-18		0.0779728	[0.059-0.096] increase	Affymetrix [11014269] (imputed)	N
661	chr17	10031182	10031183	rs9913911	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	17p13.1	NR	rs9913911-A		2E-46		0.22	[0.18-0.26] unit increase	NR [NR]	N
661	chr17	10031182	10031183	rs9913911	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	17p13.1	GAS7	rs9913911-A	0.62	2E-58				Affymetrix, Illumina [8002429] (imputed)	N
661	chr17	10031182	10031183	rs9913911	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	17p13.1	GAS7	rs9913911-A	0.62	1E-58		1.19	NR	Affymetrix, Illumina [8002429] (imputed)	N
661	chr17	10031182	10031183	rs9913911	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	17p13.1	GAS7	rs9913911-A	0.62	7E-18		1.16	NR	Affymetrix [at least 8002429] (imputed)	N
661	chr17	10031182	10031183	rs9913911	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	17p13.1	GAS7	rs9913911-G	0.373894	1E-16		0.1717164	[0.13-0.21] unit decrease	Affymetrix [7288503] (imputed)	N
661	chr17	10031182	10031183	rs9913911	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	17p13.1	GAS7	rs9913911-?	NR	2E-57		0.2122	[0.19-0.24] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	17p13.1	GAS7	rs9913911-A	NR	2E-21		1.1659077	[1.12946943961561-1.20352168938241]	Affymetrix [up to 40000000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	17p13.1	GAS7	rs9913911-A		2E-17		1.17	1.13-1.21	NR [NR] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	17p13.1	GAS7	rs9913911-A		2E-17		1.17	[1.13-1.21]	Affymetrix [at least 665500] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	17p13.1	GAS7	rs9913911-A	NR	9E-34		1.19	1.15-1.22	Affymetrix [at least 665500] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	17p13.1	GAS7	rs9913911-A	0.624	4E-68		0.231	[0.21-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p13.1	GAS7	rs9913911-A	0.6248	1E-78		0.2676	[0.24-0.3] unit increase	Affymetrix [~ 11900000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	17p13.1	GAS7	rs9913911-?	NR	2E-52		0.2	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	17p13.1	GAS7	rs9913911-G	NR	7E-12		0.17	[0.13-0.21] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	17p13.1	GAS7	rs9913911-G	NR	1E-12	(EA)	0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
661	chr17	10031182	10031183	rs9913911	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	17p13.1	GAS7	rs9913911-G	NR	1E-11		0.179	[0.13-0.23] mm Hg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
661	chr17	10031641	10031642	rs9914258	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p13.1	GAS7	rs9914258-C	0.55811	9E-13		0.0133014	[0.0097-0.0169] unit decrease	NR [13737936] (imputed)	N
661	chr17	10031641	10031642	rs9914258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p13.1		rs9914258-?	NR	3E-12				NR [~ 8900000] (imputed)	N
661	chr17	10031641	10031642	rs9914258	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p13.1		rs9914258-?	NR	1E-13		0.0148971	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
661	chr17	10033678	10033679	rs11656696	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p13.1		rs11656696-A	0.41	3E-9		5.94	z score increase	Affymetrix [9061022] (imputed)	N
661	chr17	10033678	10033679	rs11656696	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	17p13.1	GAS7	rs11656696-?	NR	1E-28		0.17	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
661	chr17	10033678	10033679	rs11656696	22570627	van Koolwijk LM	2012-05-03	PLoS Genet	Common genetic determinants of intraocular pressure and primary open-angle glaucoma.	Intraocular pressure	11,972 European ancestry individuals	7,482 European ancestry individuals	17p13.1	GAS7	rs11656696-A	0.43	1E-8		0.19	[0.12-0.26] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
661	chr17	10044113	10044114	rs2157696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p13.1		rs2157696-A	NR	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
661	chr17	10044546	10044547	rs2320549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p13.1		rs2320549-?	NR	3E-9				NR [~ 8900000] (imputed)	N
661	chr17	10077835	10077836	rs35219335	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	17p13.1	GAS7	rs35219335-?	0.86	4E-6		2.04	[1.49-2.86]	Illumina [~ 10500000] (imputed)	N
661	chr17	10085681	10085682	rs147699531	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	17p13.1	NR	rs147699531-T		4E-11		0.15	[0.11-0.19] unit increase	NR [NR]	N
661	chr17	10085996	10085997	rs149828063	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	17p13.1	GAS7	rs149828063-C	0.021	4E-6		0.25	[0.14-0.45]	Affymetrix [7435577] (imputed)	N
662	chr17	10112157	10112158	rs28452431	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17p13.1	NR	rs28452431-?	NR	7E-6	(AA)	0.352	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
662	chr17	10177707	10177708	rs7221249	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Erysipelatoclostridium id.11381)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	17p13.1		rs7221249-A	NR	4E-9		5.871853	z score increase	Affymetrix, Illumina [NR] (imputed)	N
662	chr17	10177843	10177844	rs12940268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1		rs12940268-C	0.097327	5E-14		0.02933316	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
662	chr17	10180047	10180048	rs4791967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p13.1	NR	rs4791967-C	0.269749	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
662	chr17	10180047	10180048	rs4791967	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p13.1	NR	rs4791967-C	0.256479	3E-14		0.015979	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
662	chr17	10180307	10180308	rs17762811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p13.1		rs17762811-A	0.25446	5E-13		0.018737605	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
662	chr17	10180307	10180308	rs17762811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1		rs17762811-A	0.25447	3E-18		0.024095753	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
662	chr17	10183426	10183427	rs111449119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p13.1		rs111449119-G	0.204641	7E-13		0.021290489	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
662	chr17	10206373	10206374	rs139266341	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	17p13.1		rs139266341-G	NR	3E-6		1.9346	unit increase	Illumina [NR] (imputed)	N
662	chr17	10206594	10206595	rs3744550	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	17p13.1	MYH13	rs3744550-?	NR	4E-6				Illumina [83898]	N
662	chr17	10222060	10222061	rs2074872	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	17p13.1	MYH13	rs2074872-A	0.33	3E-6		2.12	[1.55-2.91]	Affymetrix [645639] (imputed)	N
662	chr17	10222461	10222462	rs61745304	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	17p13.1	MYH13	rs61745304-A		5E-6	(EA)	2.66	[1.09-6.50]	Affymetrix, Illumina [NR] (imputed)	N
663	chr17	10295913	10295914	rs111567318	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	17p13.1	MYH8	rs111567318-?	0.0076	9E-6				Illumina [308166]	N
664	chr17	10362306	10362307	rs141456816	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	17p13.1	NR	rs141456816-C	0.013	7E-7		0.5	[0.3-0.7] unit increase	Illumina [~ 8400000] (imputed)	N
664	chr17	10424642	10424643	rs34161789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p13.1		rs34161789-?	NR	1E-8				NR [~ 8900000] (imputed)	N
664	chr17	10466473	10466474	rs2320952	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	17p13.1	NR	rs2320952-?		5E-7	(genus_Butyricicoccus)	0.7292862	[0.47-0.99] unit decrease	Affymetrix [211319]	N
665	chr17	10497744	10497745	rs55854133	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	17p13.1	MYHAS	rs55854133-?		5E-6		1.87	unit increase	Illumina [4751257] (imputed)	N
665	chr17	10520699	10520700	rs8079868	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	17p13.1	MYH3	rs8079868-C	0.12	6E-7		6.669	unit decrease	Illumina [635970]	N
665	chr17	10567482	10567483	rs169313	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	17p13.1	MAGOH2, TMEM220, MYH3, C17orf48, SCO1	rs169313-?	0.44	8E-6		0.25	[0.14-0.36] unit increase	Illumina [2095209]	N
665	chr17	10574158	10574159	rs6503319	19465909	Jallow M	2009-05-24	Nat Genet	Genome-wide and fine-resolution association analysis of malaria in West Africa.	Malaria	958 Gambian ancestry cases, 1,382 Gambian ancestry controls	1,087 Gambian ancestry cases, 2,376 Gambian ancestry controls	17p13.1	SCO1	rs6503319-T	0.45	7E-7		1.21	[1.12-1.31]	Affymetrix [402814]	N
666	chr17	10707240	10707241	rs1078643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	17p12		rs1078643-A	NR	1E-9		0.089	[0.06-0.118] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
666	chr17	10707240	10707241	rs1078643	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	17p12		rs1078643-A	0.77	2E-13	(East Asian)	1.13	[1.09-1.17]	Affymetrix, Illumina [up to 47000000] (imputed)	N
666	chr17	10707240	10707241	rs1078643	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	17p12	NR	rs1078643-A	0.77	4E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [> 10000000] (imputed)	N
666	chr17	10707240	10707241	rs1078643	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	17p12	PIRT	rs1078643-A	0.771	8E-13		1.13	[1.09-1.17]	Affymetrix, Illumina [up to 10700000] (imputed)	N
666	chr17	10707240	10707241	rs1078643	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17p12	NR	rs1078643-A	0.7589	7E-12		1.08	[1.05-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
666	chr17	10709752	10709753	rs17817050	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	17p12	NR	rs17817050-A	0.9	3E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [~ 4000000] (imputed)	N
667	chr17	10759367	10759368	rs7214291	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	LOC388335	rs7214291-?	NR	9E-6	(CE 16:0)	0.17892897	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
667	chr17	10792203	10792204	rs185818732	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17p12	RP11-963H4.3	rs185818732-T	0.0058	5E-6		0.2938	[0.17-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
668	chr17	10889676	10889677	rs2874502	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	LOC388335	rs2874502-?	NR	7E-6	(CE 16:0)	0.5693877	[0.32-0.82] unit increase	Affymetrix [at least 2500000] (imputed)	N
668	chr17	10893069	10893070	rs11655160	29915124	Marini S	2018-06-18	Stroke	17p12 Influences Hematoma Volume and Outcome in Spontaneous Intracerebral Hemorrhage.	Hematoma volume in non-lobar spontaneous intracerebral hemorrhage	166 European ancestry cases	169 European ancestry cases	17p12	NR	rs11655160-G	0.76	3E-9		0.82	[0.55-1.09] unit increase	Illumina [7569876] (imputed)	N
668	chr17	10918748	10918749	rs8076865	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	17p12		rs8076865-C	0.0302359	1E-5		0.035571	[0.02-0.051] unit increase	Illumina [13900000] (imputed)	N
669	chr17	11026692	11026693	rs16944244	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	17p12	PIRT, SHISA6	rs16944244-?	NR	2E-8				Illumina [9008729] (imputed)	N
669	chr17	11052377	11052378	rs117183159	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	17p12	NR	rs117183159-T	0.9493536	9E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
669	chr17	11094176	11094177	rs12601358	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	17p12	SHISA6	rs12601358-G	NR	7E-6	(daytime resting duration)	0.1064	[0.06-0.153] unit increase	Affymetrix [7141204] (imputed)	N
669	chr17	11100664	11100665	rs8076220	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	SHISA6, FLJ45455	rs8076220-G	0.074	2E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
669	chr17	11136342	11136343	rs188016270	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	17p12	SHISA6	rs188016270-A	0.9945	1E-6		0.324	[0.19-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
669	chr17	11136342	11136343	rs188016270	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	17p12	SHISA6	rs188016270-A	0.9945	1E-6		0.3265	[0.2-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
670	chr17	11163191	11163192	rs2159292	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p12	NR	rs2159292-C	NR	2E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
670	chr17	11196530	11196531	rs8080657	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17p12	SHISA6	rs8080657-A	0.5566	6E-10		0.012070813	[0.0082-0.0159] unit decrease	Illumina [9339358] (imputed)	N
670	chr17	11221166	11221167	rs2108975	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	17p12		rs2108975-?	NR	6E-7				Illumina [3311160] (imputed)	N
670	chr17	11227351	11227352	rs205024	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	17p12	SHISA6	rs205024-C	NR	3E-8		1.031		NR [14661600] (imputed)	N
670	chr17	11227351	11227352	rs205024	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	17p12	NR	rs205024-T	NR	3E-9		0.762	unit increase	Affymetrix [14661600] (imputed)	N
670	chr17	11231512	11231513	rs11650677	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	17p12		rs11650677-A	0.3394	9E-9		0.01484	[0.0098-0.0199] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
670	chr17	11250218	11250219	rs8076431	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17p12	NR	rs8076431-C	0.851273368210151	2E-6	(IGP26)	0.2132	[0.12-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
671	chr17	11342607	11342608	rs1877644	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	SHISA6	rs1877644-A	0.269	2E-6	(QUICKl)	0.03	[NR] unit increase	Illumina [899892]	N
671	chr17	11344614	11344615	rs2969184	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Irritable temperament	775 European ancestry individuals	NA	17p12		rs2969184-A	NR	2E-6		0.03824	unit increase	Illumina [2550710] (imputed)	N
671	chr17	11385889	11385890	rs4792143	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	17p12	FLJ45455	rs4792143-?	NR	5E-6		1.0989	[1.05-1.15]	Affymetrix, Illumina [~ 2500000] (imputed)	N
672	chr17	11406080	11406081	rs2969185	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17p12	NR	rs2969185-?	NR	4E-9		0.12049	[0.08-0.161] unit increase	NR [13958389] (imputed)	N
672	chr17	11406080	11406081	rs2969185	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17p12	NR	rs2969185-?	NR	2E-8		0.0994712	[0.065-0.134] unit decrease	NR [13958389] (imputed)	N
672	chr17	11407258	11407259	rs2908972	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17p12	NR	rs2908972-T		3E-29		0.13	[0.11-0.15] unit increase	NR [NR]	N
672	chr17	11407258	11407259	rs2908972	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17p12	SHISA6, DNAH9	rs2908972-?		4E-84				Affymetrix, Illumina [NR] (imputed)	N
672	chr17	11407258	11407259	rs2908972	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17p12	SHISA6	rs2908972-A	0.4146	9E-29		11.125	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
672	chr17	11407258	11407259	rs2908972	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17p12	NR	rs2908972-A	0.4029	8E-19		0.0637	[0.05-0.078] unit decrease	Illumina [~ 10600000] (imputed)	N
672	chr17	11407258	11407259	rs2908972	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	17p12	SHISA6	rs2908972-?	NR	5E-24		1.0787487	[1.06-1.09]	Illumina [13762925] (imputed)	N
672	chr17	11407258	11407259	rs2908972	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17p12	DNAH9	rs2908972-A	0.42	3E-12				Affymetrix, Illumina [up to 7331415] (imputed)	N
672	chr17	11407258	11407259	rs2908972	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17p12	DNAH9	rs2908972-A	0.41	3E-10	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
672	chr17	11407900	11407901	rs2969180	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17p12	NR	rs2969180-A	0.363	1E-12		0.0979	[0.071-0.125] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
672	chr17	11407900	11407901	rs2969180	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17p12	NR	rs2969180-A	0.3373	7E-10	(EA)	0.0956	[0.065-0.126] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
672	chr17	11407900	11407901	rs2969180	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	17p12	SHISA6	rs2969180-A	0.36	7E-11		0.101	[0.072-0.13] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
672	chr17	11483892	11483893	rs56658603	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17p12		rs56658603-T	0.073896	9E-6		0.057481	[0.032-0.083] unit decrease	Affymetrix [15580782] (imputed)	N
672	chr17	11495738	11495739	rs60405162	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Saccharofermentanaceae abundance in stool	5,959 Finnish ancestry individuals	NA	17p12		rs60405162-A	0.0408163	5E-9		0.0455241	[0.03-0.061] unit increase	Illumina [7980478] (imputed)	N
672	chr17	11522072	11522073	rs12949619	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	ZNF18	rs12949619-?	NR	4E-6	(PC 40:6)	0.43007782	[0.25-0.61] unit decrease	Affymetrix [at least 2500000] (imputed)	N
672	chr17	11525313	11525314	rs143145132	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity	21,495 European ancestry individuals	NA	17p12	DNAH9	rs143145132-G	0.0241	1E-6		2.0	[2.814-1.187] unit decrease	Illumina [11508759] (imputed)	N
674	chr17	11693586	11693587	rs7218761	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	17p12	DNAH9	rs7218761-?		1E-7	(IL-6 response)			Illumina [NR]	N
674	chr17	11715395	11715396	rs138856635	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH9	rs138856635-?	NR	3E-11		1.45337	[NR] unit decrease	Affymetrix [NR] (imputed)	N
674	chr17	11739330	11739331	rs7219827	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Cerebellum growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	17p12	DNAH9	rs7219827-?	NR	8E-6				Illumina [at least 653030]	N
675	chr17	11803460	11803461	rs4792192	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17p12	DNAH9	rs4792192-?	0.115	3E-6			[NR]	Affymetrix, Illumina [152234]	N
675	chr17	11897143	11897143	rs386385680	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	17p12	NR	rs386385680-AAAAAAAAAAAAAGA		4E-7		0.127	[NR] unit increase	Illumina [NR]	N
676	chr17	12047543	12047544	rs1870584	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	17p12	MAP2K4	rs1870584-?	NR	5E-6	(SF2)			Affymetrix [5476100] (imputed)	N
676	chr17	12048103	12048104	rs12944210	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	17p12	NR	rs12944210-?	NR	2E-6		126.7369	[76.13-177.34] unit decrease	Illumina [5432814] (imputed)	N
676	chr17	12048103	12048104	rs12944210	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	17p12	NR	rs12944210-?	NR	8E-7		126.6781	[76.28-177.08] unit decrease	Illumina [5432814] (imputed)	N
677	chr17	12139963	12139964	rs28735420	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17p12	MAP2K4	rs28735420-T	0.9209	4E-11		0.0039	[0.0027-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	9E-9	(48 ms)	0.0334753	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	9E-16	(-22 ms)	0.046491	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	9E-10	(102 ms)	0.0334616	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-16	(166 ms)	0.0432723	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-15	(138 ms)	0.0428257	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-13	(94 ms)	0.0403602	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-12	(80 ms)	0.038375	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-12	(214 ms)	0.0373312	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-11	(216 ms)	0.0350234	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-10	(78 ms)	0.035091	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	8E-10	(224 ms)	0.033194	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	7E-17	(168 ms)	0.0450755	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	7E-16	(140 ms)	0.044806	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	7E-15	(132 ms)	0.0420605	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	7E-13	(64 ms)	0.0414473	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	7E-12	(122 ms)	0.0383853	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-15	(68 ms)	0.0442849	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-14	(202 ms)	0.040377	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-14	(184 ms)	0.0405808	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-13	(72 ms)	0.0411622	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-13	(70 ms)	0.0418912	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-13	(108 ms)	0.0403853	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-11	(84 ms)	0.0360952	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	6E-11	(120 ms)	0.035736	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-8	(46 ms)	0.0318056	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-15	(66 ms)	0.0446644	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-15	(176 ms)	0.0421646	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-15	(150 ms)	0.0432916	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-15	(-20 ms)	0.0458363	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-14	(200 ms)	0.0409773	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-14	(160 ms)	0.0412182	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	5E-14	(152 ms)	0.041272	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-16	(170 ms)	0.043896	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-14	(204 ms)	0.040755	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-14	(196 ms)	0.0406021	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-14	(186 ms)	0.0407516	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-14	(162 ms)	0.040481	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-14	(134 ms)	0.0416771	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-13	(154 ms)	0.0397067	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-13	(144 ms)	0.0402151	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-12	(112 ms)	0.0386046	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-12	(106 ms)	0.0388532	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-11	(54 ms)	0.0385555	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	4E-10	(222 ms)	0.0344066	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-9	(52 ms)	0.0345463	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-9	(228 ms)	0.0321349	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-17	(128 ms)	0.0464075	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-15	(190 ms)	0.0427758	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-14	(194 ms)	0.0409131	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-14	(188 ms)	0.0409112	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-14	(182 ms)	0.0411158	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-14	(180 ms)	0.0418789	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-13	(156 ms)	0.0396158	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-13	(116 ms)	0.040739	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-12	(82 ms)	0.0389205	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-12	(58 ms)	0.0405463	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	3E-12	(208 ms)	0.0388408	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-9	(226 ms)	0.0321335	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-8	(230 ms)	0.0304774	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(192 ms)	0.0427383	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(174 ms)	0.0438852	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(172 ms)	0.0433345	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(148 ms)	0.0437297	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(126 ms)	0.0441578	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-15	(-24 ms)	0.0459267	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-14	(90 ms)	0.0436308	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-14	(198 ms)	0.0414652	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-14	(164 ms)	0.0406935	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-13	(92 ms)	0.0418586	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-13	(206 ms)	0.0398309	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-13	(136 ms)	0.0418831	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-13	(124 ms)	0.0405118	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-13	(114 ms)	0.0407191	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-12	(88 ms)	0.0397527	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-12	(74 ms)	0.0401649	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-12	(212 ms)	0.0383536	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-12	(210 ms)	0.038344	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-12	(110 ms)	0.0392666	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-11	(118 ms)	0.0365076	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	2E-10	(86 ms)	0.0355011	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-9	(220 ms)	0.0328592	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-9	(218 ms)	0.0327701	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-9	(-28 ms)	0.035427	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-8	(50 ms)	0.0330931	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-16	(130 ms)	0.0452092	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-14	(178 ms)	0.0419179	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-14	(146 ms)	0.041752	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-14	(142 ms)	0.0427121	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-13	(96 ms)	0.0418495	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-13	(158 ms)	0.0407883	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-13	(-26 ms)	0.0427629	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-12	(98 ms)	0.0395711	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-12	(56 ms)	0.0413067	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-12	(-18 ms)	0.0409577	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-11	(62 ms)	0.0392141	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-11	(60 ms)	0.0389067	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-10	(76 ms)	0.0360988	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-10	(104 ms)	0.0354546	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12155900	12155901	rs4614769	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MAP2K4	rs4614769-G	0.493306	1E-10	(100 ms)	0.0350023	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
677	chr17	12182245	12182246	rs7215383	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	17p12		rs7215383-A	0.249114	2E-23		0.078261	[0.062-0.094] increase	Affymetrix [NR]	N
677	chr17	12182245	12182246	rs7215383	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	17p12		rs7215383-A	0.248925	4E-19		0.0764267	[0.059-0.093] increase	Affymetrix [NR]	N
678	chr17	12191338	12191339	rs12453693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	17p12		rs12453693-T	NR	1E-12		0.0896	[0.065-0.114] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
678	chr17	12193443	12193443	rs750065349	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17p12	MAP2K4	rs750065349-GC	0.46	1E-8				NR [> 9500000] (imputed)	N
678	chr17	12193443	12193443	rs750065349	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17p12	MAP2K4	rs750065349-GC	0.463451	9E-10		1.0376351	1.02545590125554-1.04995902154559]	NR [9572556] (imputed)	N
678	chr17	12225221	12225222	rs2529687	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		17p12	intergenic	rs2529687-C	0.315	5E-6		0.42	[0.24-0.6] unit decrease	Illumina [640625] (imputed)	N
678	chr17	12226174	12226175	rs16945898	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Schizophrenia (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	17p12	Intergenic	rs16945898-?	NR	4E-6	(MTAG including spine BMD data)	0.14	unit decrease	Affymetrix [NR]	N
678	chr17	12251757	12251758	rs4792257	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	17p12	RP11-471L13.2, LINC00670	rs4792257-A	0.937	5E-6		0.0928	[0.053-0.133] unit decrease	NR [4841651] (imputed)	N
678	chr17	12260128	12260128	rs545616723	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	17p12	NR	rs545616723-GGAA	NR	4E-6	(EA)	0.002353	NR unit decrease	Illumina [3262988] (imputed)	N
678	chr17	12267101	12267102	rs2726550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	17p12		rs2726550-T	NR	2E-8		0.0755	[0.049-0.102] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
678	chr17	12267101	12267102	rs2726550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p12		rs2726550-?	NR	1E-11				NR [~ 8900000] (imputed)	N
678	chr17	12268320	12268321	rs2726548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17p12		rs2726548-?	NR	1E-17				NR [~ 8900000] (imputed)	N
678	chr17	12269029	12269030	rs2529703	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p12	NR	rs2529703-A	0.417508	3E-26		0.0331472	[0.027-0.039] unit increase	NR [19129689] (imputed)	N
679	chr17	12375774	12375775	rs2159537	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA		MYOCD	rs2159537-G		4E-6	(Trajectory class 5)	0.35	[0.21-0.49] unit increase	Illumina [at least 472049] (imputed)	N
679	chr17	12375774	12375775	rs2159537	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA		MYOCD	rs2159537-G		1E-6	(Ordinal)	0.472	[0.28-0.66] unit increase	Illumina [at least 472049] (imputed)	N
679	chr17	12399526	12399526	rs149085856	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	17p12	LINC00670	rs149085856-?	NR	1E-6	(Additive)		[NR]	Illumina [15200000] (imputed)	N
679	chr17	12399526	12399526	rs149085856	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	17p12	LINC00670	rs149085856-?	NR	2E-7	(Additive)	3.867	[NR]	Illumina [15200000] (imputed)	N
679	chr17	12401308	12401309	rs62061554	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	17p12	intergenic	rs62061554-?	0.116	3E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
679	chr17	12425842	12425843	rs4792260	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p12	NR	rs4792260-A	0.371468	6E-17		0.0269074	[0.021-0.033] unit decrease	NR [19129689] (imputed)	N
679	chr17	12426348	12426349	rs56130357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p12		rs56130357-?	NR	2E-9				NR [~ 8900000] (imputed)	N
679	chr17	12438958	12438959	rs563722433	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17p12	MAP2K4, LINC00670	rs563722433-?		9E-9		2.6361	[1.74-3.53] unit increase	Illumina [31500000] (imputed)	N
680	chr17	12457049	12457050	rs72809169	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17p12	NR	rs72809169-G	NR	9E-11		0.0935732	NR unit increase	NR [NR] (imputed)	N
680	chr17	12457078	12457079	rs72809171	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17p12	intergenic	rs72809171-G	NR	2E-9		0.198908	[0.13-0.26] unit increase	Affymetrix [27512692] (imputed)	N
680	chr17	12460128	12460129	rs72809176	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17p12	NR	rs72809176-G	0.0495896	3E-40		0.0945348	[0.081-0.108] unit increase	NR [19129689] (imputed)	N
680	chr17	12460290	12460291	rs72809177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17p12		rs72809177-?	NR	4E-19				NR [~ 8900000] (imputed)	N
680	chr17	12468094	12468095	rs7210683	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p12	NR	rs7210683-?	NR	4E-6		0.0080035	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
680	chr17	12481538	12481539	rs12945974	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MYOCD	rs12945974-A	0.444857	8E-10	(-106 ms)	0.0333507	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr17	12481538	12481539	rs12945974	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MYOCD	rs12945974-A	0.444857	6E-9	(-104 ms)	0.0321059	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr17	12481538	12481539	rs12945974	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MYOCD	rs12945974-A	0.444857	3E-9	(-100 ms)	0.0327951	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr17	12481538	12481539	rs12945974	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MYOCD	rs12945974-A	0.444857	3E-8	(-110 ms)	0.0302452	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr17	12481538	12481539	rs12945974	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p12	MYOCD	rs12945974-A	0.444857	2E-9	(-108 ms)	0.032294	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
680	chr17	12530894	12530895	rs35134090	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p12	MYOCD	rs35134090-G	0.0134522707422967	4E-6	(G_Collinsella_HB)	1.33563	[0.77-1.91] unit decrease	Illumina [7711310] (imputed)	N
680	chr17	12541628	12541629	rs764688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p12		rs764688-?	NR	4E-13				NR [~ 8900000] (imputed)	N
680	chr17	12561984	12561985	rs34242502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	17p12		rs34242502-A	NR	7E-11		0.069	[0.048-0.09] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
680	chr17	12576703	12576704	rs72811264	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	17p12		rs72811264-T	0.105886	5E-7		1.1225865	NR	Affymetrix [7846216] (imputed)	N
680	chr17	12580732	12580733	rs115950603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17p12		rs115950603-T	NR	9E-10		0.1503	[0.1-0.2] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
681	chr17	12585458	12585459	rs72811270	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17p12	NR	rs72811270-A	0.122314123	8E-6		1.1195085	[1.07-1.18]	Affymetrix, Illumina [20400945] (imputed)	N
681	chr17	12585458	12585459	rs72811270	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17p12	NR	rs72811270-A	NR	2E-8		1.057	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
681	chr17	12599001	12599002	rs56875752	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	17p12	NR	rs56875752-C	0.11	2E-7		1.38	unit increase	Illumina [8591557] (imputed)	N
681	chr17	12599001	12599002	rs56875752	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	17p12	NR	rs56875752-C	0.11	6E-7		2.91	unit increase	Illumina [8591557] (imputed)	N
681	chr17	12618679	12618680	rs72811294	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17p12	MYOCD	rs72811294-G	0.887	1E-11		1.07	[1.05-1.10]	Illumina [34740186] (imputed)	N
681	chr17	12618679	12618680	rs72811294	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17p12	MYOCD	rs72811294-G	0.89	7E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
681	chr17	12626613	12626614	rs72811298	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	17p12		rs72811298-?	NR	4E-8		2.5983	[1.67-3.53] unit increase	Affymetrix [NR] (imputed)	N
681	chr17	12634790	12634791	rs12453295	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17p12	MYOCD	rs12453295-?	NR	4E-11				Affymetrix, Illumina [22000000] (imputed)	N
681	chr17	12635870	12635871	rs35712872	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17p12	LINC00670, MYOCD	rs35712872-G	0.2451	2E-54		1.1944	[1.04-1.34] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
681	chr17	12635870	12635871	rs35712872	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	17p12	MYOCD	rs35712872-G	0.233	9E-9		1.408	[0.93-1.89] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
681	chr17	12636732	12636733	rs7224591	30265060	MacKillop J	2018-09-27	Exp Clin Psychopharmacol	Genetic influences on delayed reward discounting: A genome-wide prioritized subset approach.	Delayed reward discounting	986 European ancestry individuals	NA	17p12	NR	rs7224591-T	0.406	5E-6		0.20848	[0.12-0.3] unit decrease	Illumina [4883968] (imputed)	N
681	chr17	12637370	12637371	rs9905820	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Testosterone levels	1,589 European ancestry female individuals	NA	17p12	MYOCD	rs9905820-G	0.42	4E-6		0.094	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
681	chr17	12637741	12637742	rs1984481	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	17p12	MYOCD	rs1984481-C	0.54	1E-11		0.8	[0.56-1.04] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
681	chr17	12638477	12638478	rs16946539	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	17p12	MYOCD	rs16946539-T	0.06	2E-9		1.28	[0.85-1.71] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
681	chr17	12651296	12651297	rs144953267	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		17p12	AC005358.1	rs144953267-T	0.0301282	9E-6		1.24329	[0.7-1.78] unit decrease	Illumina [640625] (imputed)	N
681	chr17	12672226	12672227	rs9892119	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	17p12	NR	rs9892119-A	0.1	4E-6		1.1363636	[-0.96084-3.23356]	Affymetrix [at least 143006] (imputed)	N
681	chr17	12711499	12711500	rs112232902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	17p12	ARHGAP44	rs112232902-T	0.0262	5E-6		0.1444	[0.083-0.206] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
682	chr17	12744185	12744186	rs4792287	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	MYOCD	rs4792287-?	NR	9E-6	(LPC 18:1)	0.23371747	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
682	chr17	12777401	12777402	rs11651483	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	17p12	RICH2	rs11651483-C	0.665	3E-7	(Recessive model)	1.357	[1.12-1.643]	Illumina [733202]	N
682	chr17	12804549	12804550	rs7209847	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17p12	RICH2	rs7209847-G	NR	9E-6	(Risk)	0.273	[0.15-0.39] unit decrease	Illumina [628922]	N
682	chr17	12819501	12819502	rs7225504	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy (pathologically confirmed)	295 European ancestry cases, 3,864 European ancestry controls	NA	17p12	ARHGAP44	rs7225504-?	NR	8E-6		2.173913	NR	Illumina [4903804] (imputed)	N
683	chr17	12860638	12860639	rs2322712	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CEACAM6 plasma levels	400 French ancestry individuals	NA	17p12		rs2322712-G	NR	5E-7		0.221	[0.15-0.29] ng/mL decrease	Illumina [5201092] (imputed)	N
683	chr17	12873386	12873387	rs8078472	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	17p12	ARHGAP44	rs8078472-?	NR	5E-7		0.089	[0.123-0.054] unit decrease	Illumina [12039492] (imputed)	N
683	chr17	12881870	12881876	rs71967233	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	17p12	NR	rs71967233-?		5E-6		1.95	[NR]	Illumina [NR] (imputed)	N
683	chr17	12896552	12896553	rs9908102	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p12	NR	rs9908102-T	NR	2E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
684	chr17	12978841	12978842	rs8066596	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	17p12	NR	rs8066596-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
684	chr17	12999426	12999427	rs12950848	30363675	Cha EDK	2018-09-27	J Obes	Using Adipose Measures from Health Care Provider-Based Imaging Data for Discovery.	Visceral adipose tissue/subcutaneous adipose tissue ratio	2,545 European ancestry individuals	NA	17p12	NR	rs12950848-?	NR	6E-7		0.111503	[0.068-0.155] unit increase	Illumina [629675]	N
684	chr17	13004710	13004711	rs7207905	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	17p12		rs7207905-?	NR	7E-6		0.17	[0.097-0.243] unit increase	Affymetrix, Illumina [NR] (imputed)	N
684	chr17	13039466	13039467	rs12946889	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17p12		rs12946889-?	NR	6E-16				NR [9705931] (imputed)	N
684	chr17	13041306	13041307	rs11871600	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p12	NR	rs11871600-T	0.3887	1E-17				NR [9056863] (imputed)	N
684	chr17	13047712	13047713	rs7210118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	17p12		rs7210118-T	0.42	3E-6				NR [13131314] (imputed)	N
684	chr17	13047712	13047713	rs7210118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p12		rs7210118-T	0.42	4E-96		20.8	z score increase	Affymetrix [9061022] (imputed)	N
684	chr17	13047712	13047713	rs7210118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p12		rs7210118-T	0.42	3E-36		12.59	z score increase	Affymetrix [9061022] (imputed)	N
684	chr17	13047712	13047713	rs7210118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p12		rs7210118-T	0.42	2E-38		12.95	z score increase	Affymetrix [9061022] (imputed)	N
684	chr17	13047712	13047713	rs7210118	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p12	NR	rs7210118-T	0.4181	1E-17				NR [9056863] (imputed)	N
684	chr17	13047712	13047713	rs7210118	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17p12	NR	rs7210118-?		4E-9				NR [7428630] (imputed)	N
684	chr17	13054524	13054525	rs12938190	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17p12	NR	rs12938190-T	0.5098	7E-8	(Pars Opercularis)	5.412856	[3.45-7.38] unit increase	Affymetrix, Illumina [NR]	N
684	chr17	13062794	13062795	rs9900808	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	17p12	intergenic	rs9900808-A	0.04	2E-6		0.082	unit increase	Illumina [~ 2400000] (imputed)	N
684	chr17	13066818	13066819	rs2674946	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	17p12	ELAC2, HS3ST3A1	rs2674946-T	0.279089295	4E-6		1.102755	[1.05798494-1.149419408]	Illumina [10439017] (imputed)	N
684	chr17	13081056	13081057	rs78685864	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p12	NR	rs78685864-?		9E-7				Illumina [4322238] (imputed)	N
684	chr17	13091092	13091095	rs71369370	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	17p12		rs71369370-T	NR	1E-6		1.0964	[1.06-1.13]	Illumina [11600722] (imputed)	N
684	chr17	13095575	13095576	rs12325725	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		17p12	intergenic	rs12325725-A	0.07	4E-6		0.696	[0.4-0.99] unit decrease	Illumina [640625] (imputed)	N
685	chr17	13130955	13130956	rs8064833	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p12	NR	rs8064833-?	NR	4E-7				Affymetrix [NR]	N
685	chr17	13183033	13183034	rs72817287	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	17p12	NR	rs72817287-?	NR	3E-11				Illumina [at least 7383741] (imputed)	N
686	chr17	13252072	13252073	rs80282661	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	17p12	HS3ST3A1	rs80282661-T	0.0121	5E-6		4.1666		Illumina [7559010] (imputed)	N
686	chr17	13359434	13359435	rs977706	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	17p12	HS3ST3A1	rs977706-A	0.86	4E-6				Illumina [6007542] (imputed)	N
686	chr17	13359434	13359435	rs977706	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	17p12	HS3ST3A1	rs977706-A	0.86	1E-6		0.513	[0.31-0.72] unit decrease	Illumina [6007542] (imputed)	N
687	chr17	13392542	13392543	rs7220676	32062564	Guo Y	2020-02-06	Neuroimage Clin	Genome-wide association study of white matter hyperintensity volume in elderly persons without dementia.	White matter hyperintensity volume	350 European ancestry elderly individuals	NA	17p12	HS3ST3A1, MIR548H3	rs7220676-C	0.4229	3E-8				Illumina [695203] (imputed)	N
687	chr17	13393881	13393882	rs7209938	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	17p12	NR	rs7209938-?	NR	4E-6		0.8148	[0.5-1.13] unit increase	Affymetrix [7154205] (imputed)	N
687	chr17	13405735	13405736	rs73982015	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	17p12		rs73982015-?	NR	8E-6		0.21	[0.12-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
688	chr17	13530843	13530844	rs28404523	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	17p12	intergenic	rs28404523-A	0.222	2E-16		0.23	[0.18-0.29] unit decrease	Affymetrix [339439]	N
688	chr17	13539803	13539804	rs10521232	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	17p12	HS3ST3A1	rs10521232-?	NR	4E-6	(CF-PWVLTA)			Affymetrix [70897]	N
688	chr17	13559079	13559080	rs10521233	22560479	Forno E	2012-05-02	J Allergy Clin Immunol	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 children	17p12	NR	rs10521233-G	0.0735	3E-6		0.14	[NR] unit decrease	Illumina [512296]	N
688	chr17	13595578	13595579	rs149969998	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17p12	HS3ST3A1, CDRT15P1	rs149969998-G	0.01	8E-8	(EA)	0.6459	[0.41-0.88] unit increase	Illumina [~ 9000000] (imputed)	N
688	chr17	13595578	13595579	rs149969998	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17p12	HS3ST3A1, CDRT15P1	rs149969998-G	0.01	2E-7		0.6232	[0.39-0.85] unit increase	Illumina [~ 9000000] (imputed)	N
688	chr17	13622333	13622334	rs536830497	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	17p12	COX10-AS1	rs536830497-A	0.9968	7E-6		0.3468	[0.2-0.5] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
688	chr17	13626894	13626895	rs9916874	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	17p12	NR	rs9916874-A	0.8051	4E-6		0.2298	[0.13-0.33] unit increase	Illumina [NR] (imputed)	N
688	chr17	13629730	13629731	rs8073765	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	17p12	NR	rs8073765-G	NR	1E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
689	chr17	13684916	13684917	rs4792394	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	17p12	intergenic	rs4792394-C	0.469	9E-6		0.06	[NR] unit decrease	Illumina [948658]	N
689	chr17	13694514	13694515	rs139471609	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17p12	Intergenic	rs139471609-A	NR	6E-8	(between families)	5.433	unit increase	Affymetrix [up to 15107142] (imputed)	N
689	chr17	13708860	13708861	rs7215286	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17p12	NR	rs7215286-C	0.961960845948353	3E-6	(IGP65)	0.4016	[0.23-0.57] unit increase	Illumina [~ 2500000] (imputed)	N
689	chr17	13733805	13733806	rs12949531	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	17p12	intergenic	rs12949531-?	0.22	8E-6			[NR]	Affymetrix [313238]	N
690	chr17	13788654	13788655	rs8076755	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	17p12	COX10, HS3ST3A1	rs8076755-?		8E-6	(PCB118)	0.51	[0.29-0.73] unit decrease	Affymetrix [629686]	N
690	chr17	13801590	13801591	rs933376	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17p12	Intergenic	rs933376-?		1E-6		1.54	[1.29-1.84]	Illumina [7645193] (imputed)	N
690	chr17	13815859	13815860	rs12943477	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	17p12	NR	rs12943477-T	0.6407	6E-6		1.83621	[1.4-2.4]	Illumina [274400]	N
690	chr17	13833521	13833522	rs2108592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p12	NR	rs2108592-A	NR	2E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
690	chr17	13835307	13835308	rs62053877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p12		rs62053877-A	NR	1E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p12	NR	rs17669311-G	0.610605	2E-29		0.00927769	[0.0076-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p12	NR	rs17669311-G	0.609988	2E-14		0.00939057	[0.0069-0.0118] unit increase	Affymetrix [16585854] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p12	NR	rs17669311-G	0.611259	4E-18		0.0098195	[0.0076-0.0121] unit increase	Affymetrix [16582621] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p12	NR	rs17669311-G	0.610605	1E-22		0.00899988	[0.0072-0.0108] unit increase	Affymetrix [16582965] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p12	NR	rs17669311-G	0.609988	1E-9		0.0086812	[0.0059-0.0115] unit increase	Affymetrix [16585866] (imputed)	N
690	chr17	13837050	13837051	rs17669311	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p12	NR	rs17669311-G	0.611259	1E-15		0.00984758	[0.0074-0.0123] unit increase	Affymetrix [16582614] (imputed)	N
690	chr17	13838506	13838507	rs11657766	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	CDRT15	rs11657766-?	NR	2E-6	(adipic acid)	0.2206547	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
690	chr17	13845885	13845886	rs9894591	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p12	NR	rs9894591-?	NR	7E-80				Affymetrix [NR]	N
690	chr17	13849231	13849232	rs12451218	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	17p12	Intergenic	rs12451218-C	0.41	8E-6	(additive)	0.07	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
690	chr17	13855741	13855742	rs6502321	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	17p12	NR	rs6502321-A	0.07297	3E-7		0.0521247	NR unit increase	Illumina [560351]	N
690	chr17	13855741	13855742	rs6502321	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	17p12	NR	rs6502321-A	0.07297	1E-7		0.118734	NR unit increase	Illumina [560351]	N
690	chr17	13890108	13890109	rs76609685	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	17p12		rs76609685-?	NR	4E-8		2.4127	[1.55-3.28] unit increase	Affymetrix [NR] (imputed)	N
691	chr17	13910548	13910549	rs17608059	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	17p12	COX10	rs17608059-T	0.491	3E-7	(Persistence)	0.094	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
691	chr17	13928400	13928401	rs2286351	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Chronic obstructive pulmonary disease	363 Hispanic cases, 5,253 Hispanic controls	European ancestry cases and controls (see Wilk et al 2012)	17p12	CDRT15P1	rs2286351-?	NR	2E-8	(Hispanic)	6.367955	[6.10-6.63]	Illumina [up to 27887661] (imputed)	N
691	chr17	13928633	13928634	rs2529909	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	17p12	NR	rs2529909-T	NR	8E-6		0.127	[0.072-0.182] unit increase	Illumina [6319684] (imputed)	N
692	chr17	14117281	14117282	rs12150130	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	17p12	AC005224.1	rs12150130-?		6E-6	(EA, Inherited)	3.48	[1.96-6.21]	Illumina [2421290] (imputed)	N
692	chr17	14134135	14134136	rs7223903	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17p12	NR	rs7223903-?	NR	8E-7		0.147831	[0.089-0.207] unit decrease	NR [13958389] (imputed)	N
692	chr17	14136124	14136125	rs115152181	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17p12	COX10, CDRT15, HS3ST3B1	rs115152181-?		4E-27				Affymetrix, Illumina [NR] (imputed)	N
692	chr17	14138506	14138507	rs12450368	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17p12	NR	rs12450368-T		1E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
693	chr17	14177721	14177722	rs72818657	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	17p12	RP11-214O1.1	rs72818657-T	0.998	4E-6		0.9248	[0.53-1.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
693	chr17	14189908	14189909	rs191540116	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	17p12	HS3ST3B1	rs191540116-A	0.011	9E-7		2.32	[1.66-3.25]	Illumina [1438399] (imputed)	N
693	chr17	14244441	14244442	rs61202270	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p12	HS3ST3B1	rs61202270-G	0.95140625	3E-6	(HS3ST3B1, 6986_17_3)	0.26803693	[0.16-0.38] unit increase	Illumina [> 1000000] (imputed)	N
693	chr17	14256284	14256285	rs7225272	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	17p12	NR	rs7225272-?	NR	4E-7		0.03973248	[0.024-0.055] unit decrease	Illumina [7519308] (imputed)	N
693	chr17	14257082	14257083	rs7211184	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	17p12	HS3ST3B1, CDRT7	rs7211184-C	0.72	9E-6	(European)	2.0		Illumina [7993459] (imputed)	N
694	chr17	14294020	14294021	rs3848445	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17p12	HS3ST3B1	rs3848445-?	0.05	8E-9	(Ft3)			Illumina [496032]	N
694	chr17	14301889	14301890	rs2323179	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p12		rs2323179-C	0.3	3E-24		10.16	z score increase	Affymetrix [9061022] (imputed)	N
694	chr17	14301889	14301890	rs2323179	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p12		rs2323179-C	0.3	2E-19		9.02	z score increase	Affymetrix [9061022] (imputed)	N
694	chr17	14301889	14301890	rs2323179	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p12	NR	rs2323179-C	0.3046	1E-17				NR [9056863] (imputed)	N
694	chr17	14302799	14302800	rs74923452	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17p12	DHFR, MTRNR2L2, MSH3	rs74923452-?		1E-8				NR [7428630] (imputed)	N
694	chr17	14307404	14307405	rs2323183	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	17p12	Intergenic	rs2323183-?	NR	2E-8		1.98	[NR]	Affymetrix [492217] (imputed)	N
694	chr17	14331999	14332000	rs182163096	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17p12	AC022816.2	rs182163096-C	0.9985	7E-6		1.3477	[0.76-1.93] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
694	chr17	14374757	14374758	rs2022244	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	17p12	NR	rs2022244-G	0.254602	5E-6		4.58636	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
694	chr17	14395792	14395793	rs605228	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p12	HS3ST3B1	rs605228-C	0.336964	3E-9		0.0116258	[0.0078-0.0155] unit increase	NR [13737936] (imputed)	N
694	chr17	14395792	14395793	rs605228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p12		rs605228-?	NR	4E-8				NR [~ 8900000] (imputed)	N
694	chr17	14401107	14401108	rs515385	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p12		rs515385-?	NR	5E-10		0.0130087	[0.0086-0.0174] unit increase	Affymetrix [20259828] (imputed)	N
694	chr17	14417498	14417499	rs484337	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p12	NR	rs484337-?	NR	3E-31				Affymetrix [NR]	N
695	chr17	14443314	14443315	rs72822576	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	17p12	HS3ST3B1	rs72822576-?	NR	5E-6				Illumina [2668805]	N
695	chr17	14471692	14471693	rs9890008	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	17p12		rs9890008-A	0.25	5E-6		2.354	[1.35-3.36] unit increase	NR [534934]	N
695	chr17	14517466	14517467	rs12600394	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	17p12	intergenic	rs12600394-?		2E-6				NR [~ 3000000] (imputed)	N
695	chr17	14545004	14545005	rs145228677	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		17p12	Intergenic	rs145228677-C	0.004	7E-6	(liability model)	0.79	[0.44-1.14] unit increase	NR [19725427] (imputed)	N
696	chr17	14554235	14554236	rs2323458	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	17p12	NR	rs2323458-A	0.361	7E-13		0.141	[0.10-0.18] unit increase	Illumina [NR]	N
696	chr17	14558138	14558139	rs9906577	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	17p12	HS3ST3B1	rs9906577-?	NA	3E-17		2.12	[1.63-2.61] unit increase	Affymetrix [5541230] (imputed)	N
696	chr17	14561015	14561016	rs12940030	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	17p12	PMP22, HS3ST3B1	rs12940030-T	0.71	7E-10		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina [~ 1000000] (imputed)	N
696	chr17	14562898	14562899	rs12950586	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	17p12	HS3ST3B1	rs12950586-T	0.276	1E-8		2.465	[1.61-3.32] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
696	chr17	14565129	14565130	rs4792535	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	17p12	HS3ST3B1	rs4792535-T	0.36	3E-12		2.29	[1.66-2.92] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
696	chr17	14566138	14566139	rs2159394	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p12	NR	rs2159394-?	NR	3E-6				Affymetrix [NR]	N
696	chr17	14629745	14629746	rs9899891	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	17p12	FLJ45831	rs9899891-A	0.74	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
696	chr17	14643025	14643026	rs62063007	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	17p12		rs62063007-G	0.067579172	2E-6		0.032076254	[0.019-0.045] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
696	chr17	14673933	14673934	rs9901522	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	17p12	PMP22	rs9901522-?	0.0695	9E-8	(EA)	1.16	[1.10-1.22]	Illumina [10031630] (imputed)	N
697	chr17	14688104	14688105	rs62060075	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	17p12	CDRT7	rs62060075-T	0.08	5E-6		1.6666665		Illumina [4903804] (imputed)	N
697	chr17	14714300	14714301	rs9303119	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	17p12	HS3ST3B1, LOC101928475	rs9303119-?	NR	1E-6				Illumina [at least 653030]	N
697	chr17	14714816	14714817	rs189798510	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17p12	NR	rs189798510-?	NR	2E-7	(Japanese)	0.5677	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
697	chr17	14718815	14718816	rs73280556	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p12	NR	rs73280556-G	0.02265	4E-9	(BPNT1)	0.03482	NR unit increase	Illumina [1671387] (imputed)	N
697	chr17	14735491	14735492	rs6502398	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	17p12	intergenic	rs6502398-C	NR	5E-7		1.3157895	[1.32-1.32]	Illumina [up to 294091]	N
697	chr17	14772769	14772770	rs72823745	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	17p12	NR	rs72823745-?	NR	6E-6		0.3496	[0.19-0.51] unit decrease	Illumina [at least 560000] (imputed)	N
698	chr17	14812310	14812311	rs1860380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p12		rs1860380-?	NR	4E-8				NR [~ 8900000] (imputed)	N
698	chr17	14819935	14819936	rs4792558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p12	NR	rs4792558-C	0.745146	3E-10		0.013504	[0.0093-0.0177] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
698	chr17	14819935	14819936	rs4792558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p12	NR	rs4792558-C	0.72711	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
698	chr17	14822051	14822052	rs1016144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p12		rs1016144-A	0.742005	2E-9		0.015420163	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
698	chr17	14822051	14822052	rs1016144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p12		rs1016144-A	0.741961	4E-12		0.01778768	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
698	chr17	14822051	14822052	rs1016144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p12		rs1016144-A	0.742001	5E-11		0.016807104	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
698	chr17	14822051	14822052	rs1016144	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17p12	NR	rs1016144-A	0.742135	3E-13		0.015591	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
698	chr17	14822051	14822052	rs1016144	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p12	NR	rs1016144-A	0.742596	9E-11		0.014524	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
698	chr17	14876775	14876776	rs9892299	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p12	PMP22	rs9892299-?	NR	8E-6	(alpha glycerophosphocholine)	3.2988842	[1.85-4.75] unit increase	Affymetrix [at least 2500000] (imputed)	N
698	chr17	14880237	14880238	rs117533028	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17p12	RPL23AP76	rs117533028-T	0.036	8E-6		0.089	[0.05-0.128] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
698	chr17	14889924	14889925	rs8066099	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p12	RPL23AP76	rs8066099-A	0.017	2E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
698	chr17	14928732	14928733	rs1013191	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17p12	CDRT7	rs1013191-T	0.43999999999999995	5E-6		1.052953		NR [9372253] (imputed)	N
698	chr17	14937109	14937110	rs2098086	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	17p12	NR	rs2098086-T	0.2213	2E-6		0.1725	[0.1-0.24] unit increase	Illumina [10677593] (imputed)	N
698	chr17	14938943	14938944	rs9907309	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	17p12	AC005772.2, CDRT7, RPL23AP76, PMP22	rs9907309-G	NR	5E-6	(sleep latency, weekdays)	0.2443	[0.14-0.35] unit increase	Affymetrix [7141204] (imputed)	N
699	chr17	14955333	14955334	rs7207701	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (sleepiness)	1,902 Japanese ancestry female cases, 3,832 Japanese ancestry female controls	1,934 Japanese ancestry female cases, 3,680 Japanese ancestry female controls	17p12	NR	rs7207701-T	0.30059775	5E-7		0.15388642	[0.094-0.214] unit increase	Affymetrix [536506]	N
699	chr17	14962733	14962734	rs60439096	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	17p12	NR	rs60439096-A	0.978	8E-7		2.5134	[1.51-3.51] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
699	chr17	15008429	15008430	rs8066891	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid plaques in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	17p12	RP11-924A14.1	rs8066891-A	0.829	4E-6		1.724138	[1.37-2.17]	Illumina [63089444] (imputed)	N
699	chr17	15060803	15060804	rs2061	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	17p12	PMP22	rs2061-?	NR	9E-7		2.04	[1.3-4.76]	Affymetrix, Illumina [NR] (imputed)	N
700	chr17	15102213	15102214	rs72811147	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p12	NR	rs72811147-?		4E-6				Illumina [4322238] (imputed)	N
700	chr17	15123118	15123118	rs149354567	33560138	Dube MP	2021-02-09	Circ Genom Precis Med	Pharmacogenomics of the Efficacy and Safety of Colchicine in COLCOT.	Cardiovascular event in colchicine-treated recent myocardial infarction (time to event)	39 European ancestry cases, 663 European ancestry controls	NA	17p12		rs149354567-?	NR	2E-7				Illumina [4462492] (imputed)	N
700	chr17	15191023	15191024	rs7217780	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Preterm birth (maternal effect)	3,331 European ancestry preterm birth mothers, 40,236 European ancestry term birth mothers	2,565 European ancestry preterm birth mothers, 6,034 European ancestry term birth mothers	17p12	TEKT3, PMP22, TVP23C-CDRT4	rs7217780-C	0.336	5E-8		1.15	[NR]	Illumina [15635593] (imputed)	N
700	chr17	15193055	15193056	rs1380181	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	17p12	NR	rs1380181-A	0.2	3E-7		1.97	[1.23-2.71] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
700	chr17	15194723	15194724	rs8073989	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference (1 day post influenza vaccination)	298 individuals	NA	17p12	NR	rs8073989-?	NR	3E-8				NR [1665663]	N
700	chr17	15195278	15195279	rs79121763	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	17p12	TEKT3, PMP22	rs79121763-T	0.09	7E-14		0.471	[0.35-0.59] unit decrease	Affymetrix [19941912] (imputed)	N
701	chr17	15322063	15322064	rs8078304	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p12	NR	rs8078304-?		6E-6				Illumina [4322238] (imputed)	N
701	chr17	15331516	15331517	rs2906966	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	17p12	CDRT4	rs2906966-?	NR	8E-6	(ppFEV1)			Affymetrix [70897]	N
702	chr17	15387076	15387077	rs72824474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17p12		rs72824474-G	NR	2E-8		0.0245	[0.016-0.033] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
703	chr17	15579447	15579448	rs142177012	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p12	NR	rs142177012-?	NR	2E-7		0.10155	[0.063-0.14] unit increase	Affymetrix [805426] (imputed)	N
705	chr17	15733544	15733545	rs522521	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	17p12	LOC105371557	rs522521-A	0.6	7E-10		0.42	[17.32-0.56]	Illumina [5378539] (imputed)	N
705	chr17	15733544	15733545	rs522521	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Diabetic neuropathy in type 2 diabetes	218 European ancestry cases, 382 European ancestry controls	NA	17p12	LOC105371557	rs522521-A	0.56	5E-8		0.49	[0.38-0.64]	Illumina [5378539] (imputed)	N
705	chr17	15826020	15826021	rs859267	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-12p40)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	17p12	ADORA2B	rs859267-C		3E-7	(AA)			Illumina [NR]	N
705	chr17	15833592	15833593	rs113133607	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17p12	NR	rs113133607-?		4E-7				Illumina [4322238] (imputed)	N
706	chr17	15868290	15868291	rs2324082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p12		rs2324082-?	NR	1E-7				NR [~ 8900000] (imputed)	N
706	chr17	15899674	15899675	rs7211756	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	17p12	ZSWIM7	rs7211756-?	NR	3E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
706	chr17	15921070	15921071	rs9897542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17p12		rs9897542-G	NR	8E-11		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
706	chr17	15932819	15932820	rs9916868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p12		rs9916868-C	NR	3E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
706	chr17	15943143	15943144	rs4792716	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17p12	NCOR1	rs4792716-A	0.437907	5E-9		0.00810528	[0.0054-0.0108] unit decrease	Affymetrix [12370749]	N
706	chr17	15943143	15943144	rs4792716	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p12	NR	rs4792716-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
706	chr17	15943909	15943910	rs1075901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p12		rs1075901-?	NR	4E-12				NR [~ 8900000] (imputed)	N
706	chr17	15943909	15943910	rs1075901	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17p12	NA	rs1075901-T	0.4516	4E-13		0.0118	[0.0087-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
706	chr17	15943909	15943910	rs1075901	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17p12	NA	rs1075901-T	0.4516	4E-13		0.0118	[0.0087-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
706	chr17	15965862	15965863	rs11652025	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17p12		rs11652025-G	NR	2E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
707	chr17	15998836	15998837	rs8080378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p12	NCOR1	rs8080378-G	0.531507	4E-14		0.01711989	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
707	chr17	16006826	16006827	rs4792721	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	17p11.2	NCOR1	rs4792721-A	NR	4E-7	(adults)	0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
707	chr17	16030519	16030520	rs34351630	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17p11.2	NCOR1	rs34351630-T	0.4654	3E-10		0.0147	[0.01-0.019] unit increase	Affymetrix [19819130] (imputed)	N
707	chr17	16030519	16030520	rs34351630	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17p11.2	NCOR1	rs34351630-T	0.4654	7E-9		0.0135	[0.009-0.018] unit increase	Affymetrix [19819130] (imputed)	N
707	chr17	16031028	16031029	rs12937088	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p11.2	NR	rs12937088-G	0.5079670000000001	9E-17		0.00631421	[0.0047-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
707	chr17	16031028	16031029	rs12937088	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p11.2	NR	rs12937088-G	0.5079670000000001	9E-8		0.00460979	[0.0028-0.0064] unit increase	Affymetrix [16582965] (imputed)	N
707	chr17	16049625	16049626	rs11078333	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	17p11.2	NCOR1	rs11078333-A	0.53	2E-12		0.042	[0.03-0.054] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
707	chr17	16052380	16052381	rs9903464	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p11.2		rs9903464-C	0.48	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
707	chr17	16077115	16077116	rs178835	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17p11.2	NR	rs178835-T	0.440782	2E-13		0.0138357	[0.01-0.018] unit decrease	NR [NR]	N
707	chr17	16097429	16097430	rs178810	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	17p11.2	NCOR1	rs178810-T	0.56	3E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
708	chr17	16123872	16123873	rs178795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17p11.2		rs178795-A	NR	3E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
708	chr17	16136288	16136289	rs178785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p11.2		rs178785-?	NR	5E-9				NR [~ 8900000] (imputed)	N
708	chr17	16138256	16138257	rs12936233	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17p11.2		rs12936233-T	0.523	3E-21				Affymetrix [10369434] (imputed)	N
708	chr17	16139148	16139149	rs12945855	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17p11.2	NR	rs12945855-T	0.467881	7E-9		5.8	z score decrease	NR [10847151] (imputed)	N
708	chr17	16141248	16141249	rs7215071	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs7215071-C	0.623539	2E-39				Affymetrix, Illumina [24649327] (imputed)	N
708	chr17	16156234	16156235	rs1029809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p11.2		rs1029809-?	NR	2E-27				NR [~ 8900000] (imputed)	N
708	chr17	16168783	16168784	rs12936529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17p11.2		rs12936529-T	NR	7E-42		0.0311	[0.027-0.036] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
708	chr17	16168783	16168784	rs12936529	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p11.2	NR	rs12936529-T	0.478786	3E-42		0.025157	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
708	chr17	16168783	16168784	rs12936529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17p11.2	PIGL	rs12936529-T	0.4787	7E-26		0.03780427	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16168783	16168784	rs12936529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17p11.2	PIGL	rs12936529-T	0.4787	7E-24		0.03636989	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16168783	16168784	rs12936529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17p11.2	PIGL	rs12936529-T	0.4787	4E-26		0.03806243	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16169008	16169009	rs9910148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17p11.2		rs9910148-?	NR	5E-8				Affymetrix [NR] (imputed)	N
708	chr17	16169008	16169009	rs9910148	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17p11.2		rs9910148-G	0.524	6E-35				Affymetrix [10369434] (imputed)	N
708	chr17	16169008	16169009	rs9910148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p11.2	PIGL	rs9910148-A	0.475727	4E-74		0.040346865	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr17	16169008	16169009	rs9910148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p11.2	PIGL	rs9910148-A	0.475763	1E-72		0.039929066	[0.036-0.044] unit increase	Affymetrix [93095623] (imputed)	N
708	chr17	16170763	16170764	rs7210990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs7210990-A	0.422238	1E-80				Affymetrix, Illumina [23114412] (imputed)	N
708	chr17	16170763	16170764	rs7210990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p11.2	NR	rs7210990-A	0.477932	9E-83		0.037084	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
708	chr17	16170763	16170764	rs7210990	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17p11.2	PIGL	rs7210990-A	0.478	5E-32		0.04209907	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16170763	16170764	rs7210990	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17p11.2	PIGL	rs7210990-A	0.478	1E-30		0.04105608	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16171687	16171689	rs74267027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p11.2	PIGL	rs74267027-C	0.47539	4E-20		0.020475443	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
708	chr17	16171687	16171689	rs74267027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17p11.2	PIGL	rs74267027-C	0.4785	4E-11		0.02381667	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16171687	16171689	rs74267027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17p11.2	PIGL	rs74267027-C	0.4785	3E-26		0.03819499	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16171687	16171689	rs74267027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17p11.2	PIGL	rs74267027-C	0.4785	6E-26		0.0378289	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16171687	16171689	rs74267027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17p11.2	PIGL	rs74267027-C	0.4784	3E-22		0.03479868	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16172980	16172981	rs71353786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17p11.2		rs71353786-A	NR	1E-18		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
708	chr17	16172980	16172981	rs71353786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p11.2	PIGL	rs71353786-A	0.477284	3E-32		0.026183343	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr17	16172980	16172981	rs71353786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p11.2	PIGL	rs71353786-A	0.477244	1E-66		0.038215525	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr17	16175024	16175025	rs35565381	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17p11.2	PIGL	rs35565381-T		3E-9		0.14	unit decrease	Affymetrix [at least 2696785] (imputed)	N
708	chr17	16176882	16176883	rs2014604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17p11.2	PIGL	rs2014604-C	0.5209	3E-11		0.02362921	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr17	16186814	16186815	rs4792728	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p11.2	Intergenic	rs4792728-T	0.5035	6E-9	(MTAG)	0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
708	chr17	16229231	16229232	rs15739	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p11.2	Intergenic	rs15739-A	0.4993	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
708	chr17	16234259	16234260	rs11650438	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17p11.2	CENPV	rs11650438-A	0.471	1E-11		0.008	[0.0056-0.0104] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
708	chr17	16235461	16235462	rs11651955	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17p11.2	NR	rs11651955-A	0.499	3E-10		0.00682035	[0.0047-0.0089] unit decrease	NR [9732723] (imputed)	N
708	chr17	16235461	16235462	rs11651955	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17p11.2	NR	rs11651955-A	0.499	4E-8		0.014026386	[0.009-0.019] unit decrease	NR [~ 10000000] (imputed)	N
708	chr17	16236387	16236388	rs4792735	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17p11.2	CENPV	rs4792735-A	0.5357	2E-9		0.011650354	[0.0078-0.0155] unit increase	Illumina [9339358] (imputed)	N
708	chr17	16246015	16246016	rs7477	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	17p11.2	CENPV	rs7477-A	0.49	3E-7		1.16	[NR]	Illumina [~ 1400000] (imputed)	N
708	chr17	16246015	16246016	rs7477	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	17p11.2	PIGL, CENPV	rs7477-T	0.48	3E-7	(Joint)	1.3	[1.16-1.44]	Illumina [254145]	N
709	chr17	16319948	16319949	rs79269225	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	17p11.2	TRPV2, PIGL, CENPV, UBB, FTLP12, C17orf76-AS1, 22874_SNORD49B, SNORD49A, SNORD65, C17orf76	rs79269225-T	0.05	6E-7		1.11	[0.68-1.54] unit decrease	Illumina [8257341] (imputed)	N
710	chr17	16400754	16400755	rs34614969	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	17p11.2	NR	rs34614969-?	NR	4E-6		0.02395	[0.014-0.034] unit decrease	Affymetrix [9658292] (imputed)	N
710	chr17	16472849	16472850	rs146207734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p11.2		rs146207734-?	NR	1E-8				NR [~ 8900000] (imputed)	N
710	chr17	16483100	16483101	rs117894182	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	17p11.2		rs117894182-?	NR	3E-6		0.47	[0.28-0.66] unit increase	Affymetrix, Illumina [NR] (imputed)	N
711	chr17	16522921	16522922	rs118083884	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p11.2	NR	rs118083884-?	NR	1E-7		0.2027	[0.13-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
712	chr17	16760597	16760598	rs191763772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs191763772-G	NR	2E-15		0.0339	[0.025-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr17	16760597	16760598	rs191763772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs191763772-G	NR	3E-24		0.0431	[0.035-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
712	chr17	16764782	16764783	rs56324271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs56324271-G	NR	5E-18		0.0246	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
712	chr17	16764782	16764783	rs56324271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs56324271-G	NR	1E-40		0.0378	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
712	chr17	16764977	16764978	rs7210837	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	17p11.2	intergenic	rs7210837-?		6E-7				NR [~ 3000000] (imputed)	N
713	chr17	16788850	16788851	rs10521322	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	17p11.2	NR	rs10521322-C	0.155	9E-6	(IFNgamma_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
713	chr17	16816542	16816543	rs4792793	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	17p11.2	LOC100129535	rs4792793-C		4E-6		0.12	[0.07-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16816655	16816656	rs8067287	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	17p11.2	NR	rs8067287-?	0.78	2E-6	(AA, recessive )	2.0833335		Affymetrix [NR]	N
713	chr17	16820098	16820099	rs57968458	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	17p11.2	TNFRSF13B	rs57968458-A	0.098	3E-10		0.33	[NR] unit increase	Illumina [12100000] (imputed)	N
713	chr17	16820098	16820099	rs57968458	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	17p11.2	TNFRSF13B	rs57968458-A	0.098	6E-11		0.36	[NR] unit increase	Illumina [12100000] (imputed)	N
713	chr17	16820223	16820224	rs16961828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p11.2		rs16961828-C	0.104527	6E-11		0.02377531	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16820512	16820513	rs28507905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p11.2		rs28507905-?	NR	7E-13				NR [~ 8900000] (imputed)	N
713	chr17	16837364	16837365	rs8065836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs8065836-G	NR	2E-12		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16837364	16837365	rs8065836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs8065836-G	NR	4E-19		0.0225	[0.018-0.027] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16839781	16839782	rs74998556	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	17p11.2	TNFRSF13B	rs74998556-T		9E-7		1.46	[1.25-1.69]	Illumina [10258281] (imputed)	N
713	chr17	16839781	16839782	rs74998556	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Immunoglobulin measurement (zinc sulfate turbidity test)	12,303 Japanese ancestry individuals	NA	17p11.2	KRT16P2, TNFRSF13B	rs74998556-?	NR	1E-26		0.1508	[0.12-0.18] unit increase	Illumina [6108953] (imputed)	N
713	chr17	16839900	16839901	rs35966917	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	17p11.2	TNFRSF13B	rs35966917-A	0.423	5E-9		0.914	[0.88-0.94]	Illumina [11270530] (imputed)	N
713	chr17	16842446	16842447	rs55701306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	17p11.2	NR	rs55701306-C	0.649801	3E-12		0.027606	[0.02-0.035] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
713	chr17	16842990	16842991	rs34562254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17p11.2		rs34562254-A	NR	1E-288		0.1038	[0.098-0.109] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
713	chr17	16842990	16842991	rs34562254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	17p11.2		rs34562254-A	0.365681	4E-124		0.0921086	[0.084-0.1] unit increase	Illumina [13477433] (imputed)	N
713	chr17	16842990	16842991	rs34562254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p11.2		rs34562254-A	NR	5E-35		0.035	[0.03-0.04] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
713	chr17	16842990	16842991	rs34562254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	17p11.2		rs34562254-A	0.365915	4E-17		0.0328141	[0.025-0.04] unit decrease	Illumina [13474682] (imputed)	N
713	chr17	16842990	16842991	rs34562254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34562254-A	0.157446	2E-24				Affymetrix, Illumina [24332387] (imputed)	N
713	chr17	16842990	16842991	rs34562254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p11.2	NR	rs34562254-A	0.100764	2E-16		0.025514	[0.019-0.032] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
713	chr17	16842990	16842991	rs34562254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34562254-A	0.155991	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
713	chr17	16842990	16842991	rs34562254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34562254-A	0.157003	2E-11				Affymetrix, Illumina [24558453] (imputed)	N
713	chr17	16842990	16842991	rs34562254	32569378	Clay-Gilmour AI	2020-06-01	Blood Adv	Coinherited genetics of multiple myeloma and its precursor, monoclonal gammopathy of undetermined significance.	Multiple myeloma	2,434 European ancestry cases, 2,705 European ancestry controls	NA	17p11.2	TNFRSF13B	rs34562254-?	NR	2E-8		1.3	NR	Affymetrix, Illumina [5864648] (imputed)	N
713	chr17	16842990	16842991	rs34562254	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs34562254-?	NR	8E-10		0.02544	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
713	chr17	16842990	16842991	rs34562254	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs34562254-?	NR	2E-11		0.03087	[0.022-0.04] unit decrease	Illumina [6108953] (imputed)	N
713	chr17	16842990	16842991	rs34562254	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	17p11.2	TNFSF13B	rs34562254-A	0.77	5E-8		0.11	NR SD units increase	Illumina [21568490] (imputed)	N
713	chr17	16842990	16842991	rs34562254	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	17p11.2	NR	rs34562254-A		4E-17		1.3	[1.23-1.39]	Illumina [at least 7182761] (imputed)	N
713	chr17	16843194	16843195	rs573841223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs573841223-G	0.00586500000000001	9E-25		0.17647049	[0.14-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16843728	16843729	rs72553883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs72553883-T	0.00602100000000005	4E-16		0.1365454	[0.1-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16843728	16843729	rs72553883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs72553883-T	0.00598500000000002	5E-11		0.10908328	[0.077-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16843728	16843729	rs72553883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs72553883-T	0.00599000000000005	1E-20		0.1540418	[0.12-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16843728	16843729	rs72553883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs72553883-T	0.00599099999999997	7E-16		0.13346381	[0.1-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16845166	16845167	rs4792800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	17p11.2		rs4792800-G	0.373218	5E-8		0.0213705	[0.014-0.029] unit decrease	Illumina [13476323] (imputed)	N
713	chr17	16845166	16845167	rs4792800	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	17p11.2	TNFRSF13B	rs4792800-G	0.12	2E-6		1.36	[1.20-1.54]	Affymetrix, Illumina [NR] (imputed)	N
713	chr17	16845166	16845167	rs4792800	22673310	Liao M	2012-07-07	Genes Immun	Genome-wide association study identifies common variants at TNFRSF13B associated with IgG level in a healthy Chinese male population.	IgG levels	1,999 Chinese ancestry male individuals	1,496 Chinese ancestry male individuals	17p11.2	TNFRSF13B	rs4792800-G	0.50	1E-12				Illumina [1940243] (imputed)	N
713	chr17	16845994	16845995	rs11656868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs11656868-A	NR	4E-9		0.029	[0.019-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16846154	16846155	rs12938061	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs12938061-T	0.558314	3E-8		0.0110583	[0.0072-0.0149] unit increase	Affymetrix [NR] (imputed)	N
713	chr17	16848749	16848750	rs4561508	23303382	Hong KW	2013-01-10	J Hum Genet	Genome-wide association study of serum albumin:globulin ratio in Korean populations.	Hematology traits	4,637 East Asian ancestry individuals	4,205 East Asian ancestry individuals	17p11.2	TNFRSF13B	rs4561508-T	0.335	8E-24	(ALB/GLB)	0.031	[0.025-0.037] unit increase	Affymetrix [290659]	N
713	chr17	16848749	16848750	rs4561508	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs4561508-T	0.37	2E-11	(Japanese)	0.047	[-0.09020-0.18420] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr17	16848749	16848750	rs4561508	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs4561508-T	0.11	2E-18		0.0401	[0.031-0.049] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr17	16848749	16848750	rs4561508	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs4561508-T	0.11	1E-9	(EA)	0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
713	chr17	16849138	16849139	rs4273077	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	17p11.2	TNFRSF13B	rs4273077-G	0.1	3E-14		1.32	[NR]	Illumina [33000000] (imputed)	N
713	chr17	16849138	16849139	rs4273077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs4273077-G	NR	2E-146		0.1089	[0.1-0.12] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16849138	16849139	rs4273077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs4273077-G	NR	4E-15		0.0332	[0.025-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16849138	16849139	rs4273077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs4273077-G	NR	1E-261		0.146	[0.14-0.15] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16849138	16849139	rs4273077	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	17p11.2	TNFRSF13B	rs4273077-G	0.12	8E-9		1.255	[1.16-1.36]	Illumina [414804]	N
713	chr17	16849138	16849139	rs4273077	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	17p11.2	TNFRSF13B	rs4273077-G	0.46	3E-10	(TP)	0.088	[0.061-0.115] unit increase	Illumina [561583]	N
713	chr17	16852186	16852187	rs34557412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p11.2		rs34557412-G	NR	3E-25		0.142	[0.12-0.17] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17p11.2		rs34557412-G	NR	6E-47		0.1974	[0.17-0.22] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p11.2		rs34557412-G	NR	1E-10		0.0902	[0.063-0.118] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p11.2		rs34557412-G	NR	1E-22		0.1378	[0.11-0.17] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	9E-22		0.110515	[0.087-0.134] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	1E-84		0.250573	[0.23-0.28] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	1E-24		0.135506	[0.11-0.16] unit increase	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	4E-18		0.102096	[0.079-0.125] unit increase	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	2E-38		0.140763	[0.12-0.16] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	6E-75		0.210419	[0.19-0.23] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	9E-21		0.109921	[0.087-0.133] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	7E-23		0.100058	[0.079-0.121] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	4E-21		0.104987	[0.083-0.127] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	6E-15		0.0880558	[0.065-0.111] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	2E-36		0.151151	[0.13-0.18] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	17p11.2		rs34557412-?	NR	5E-11		0.0734359	[0.05-0.097] unit decrease	NR [9800000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-G	NR	2E-65		0.2565	[0.23-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-G	NR	5E-14		0.113	[0.084-0.142] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-G	NR	8E-145		0.3845	[0.36-0.41] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.007019	1E-15		0.10569835	[0.08-0.132] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.007023	6E-10		0.08271953	[0.057-0.109] unit increase	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.007023	3E-13		0.09654493	[0.071-0.122] unit increase	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00708600000000004	1E-63		0.2263229	[0.2-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00708500000000001	6E-34		0.16306432	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00701399999999997	1E-19		0.12025766	[0.094-0.146] unit increase	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00703299999999996	6E-37		0.16855633	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00702599999999998	4E-64		0.2242506	[0.2-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00702599999999998	7E-22		0.12828556	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00708299999999995	3E-9		0.07929878	[0.053-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00702700000000001	2E-17		0.105846	[0.082-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00703399999999999	3E-12		0.09189204	[0.066-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00701300000000005	1E-11		0.08951692	[0.064-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.00700999999999996	4E-35		0.16369393	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993357	3E-43				Affymetrix, Illumina [24588908] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993234	1E-45		0.162342	[0.14-0.18] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993308	2E-92				Affymetrix, Illumina [23467995] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993192	4E-94		0.23807	[0.22-0.26] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993342	7E-18				Affymetrix, Illumina [24246363] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993219	5E-21		0.106292	[0.084-0.128] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993241	7E-12				Affymetrix, Illumina [20825802] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993105	1E-14		0.090885	[0.068-0.114] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993317	2E-38				Affymetrix, Illumina [23472807] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993202	2E-40		0.155819	[0.13-0.18] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34557412-A	0.993192	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
713	chr17	16852186	16852187	rs34557412	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p11.2	NR	rs34557412-A	0.992864	2E-10		0.106892	[0.074-0.14] unit increase	Affymetrix [16580851] (imputed)	N
713	chr17	16852186	16852187	rs34557412	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p11.2	TNFRSF13B	rs34557412-G	0.01	3E-21		1.59	[1.52-1.67]	Illumina [at least 560000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17p11.2	NR	rs34557412-?	NR	2E-6		0.2517	[0.15-0.36] unit increase	Illumina [at least 560000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	1E-19		0.2026117	[0.16-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	2E-11		0.1497266	[0.11-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	1E-14		0.168474	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	3E-27		0.2369003	[0.19-0.28] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	2E-10		0.1402611	[0.097-0.184] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17p11.2	TNFRSF13B	rs34557412-G	0.0075	3E-15		0.1731594	[0.13-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr17	16852186	16852187	rs34557412	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17p11.2	TNFRSF13B	rs34557412-?	NR	3E-21		1.595	[1.449-1.755]	Illumina [13757430] (imputed)	N
713	chr17	16852292	16852292	rs72553875	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs72553875-GT	NR	9E-12		0.4873	[0.35-0.63] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16854479	16854480	rs74892229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17p11.2		rs74892229-G	0.898303	1E-13		0.0502945	[0.037-0.064] unit increase	NR [11722792] (imputed)	N
713	chr17	16857176	16857177	rs57166795	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs57166795-?	NR	5E-166		0.1337	[0.12-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
713	chr17	16860053	16860054	rs113436029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs113436029-G	NR	6E-72		0.109	[0.097-0.121] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16860053	16860054	rs113436029	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs113436029-G	NR	4E-128		0.1463	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16863637	16863638	rs4985726	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs4985726-?	NR	3E-107		0.1032	[0.094-0.112] unit increase novel	Illumina [6108953] (imputed)	N
713	chr17	16863637	16863638	rs4985726	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	17p11.2	TNFRSF13B	rs4985726-?	NR	1E-193		0.1495	[0.14-0.16] unit increase novel	Illumina [6108953] (imputed)	N
713	chr17	16863637	16863638	rs4985726	22558069	Osman W	2012-04-27	PLoS One	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p11.2	TNFRSF13B	rs4985726-G	0.375	7E-24	(NAP)	0.135	[0.11-0.16] unit increase	Illumina [2178644] (imputed)	N
713	chr17	16863637	16863638	rs4985726	22558069	Osman W	2012-04-27	PLoS One	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	17p11.2	TNFRSF13B	rs4985726-G	0.375	1E-14	(TP)	0.107	[0.080-0.134] unit increase	Illumina [2178644] (imputed)	N
713	chr17	16875060	16875061	rs6502544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	17p11.2		rs6502544-G	0.666556	2E-13		0.0261215	[0.019-0.033] unit increase	Illumina [13479135] (imputed)	N
713	chr17	16875060	16875061	rs6502544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	17p11.2		rs6502544-G	0.666134	7E-9		0.020176	[0.013-0.027] unit increase	Illumina [13478948] (imputed)	N
713	chr17	16875060	16875061	rs6502544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	17p11.2		rs6502544-G	0.66641	2E-8		0.0198045	[0.013-0.027] unit increase	Illumina [13478961] (imputed)	N
713	chr17	16875635	16875636	rs4985754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p11.2		rs4985754-A	NR	4E-21		0.0214	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
713	chr17	16875635	16875636	rs4985754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17p11.2		rs4985754-A	NR	2E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
713	chr17	16875635	16875636	rs4985754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17p11.2		rs4985754-A	NR	3E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
713	chr17	16876864	16876865	rs7504106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p11.2	NR	rs7504106-A	0.24469	1E-10		0.014565	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
713	chr17	16883679	16883680	rs4985762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs4985762-A	NR	9E-16		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16883679	16883680	rs4985762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs4985762-A	NR	6E-27		0.0292	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
713	chr17	16892840	16892841	rs7214091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs7214091-C	NR	4E-25		0.0263	[0.021-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16892840	16892841	rs7214091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17p11.2	NR	rs7214091-C	NR	5E-47		0.0365	[0.032-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
713	chr17	16894556	16894558	rs140220748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17p11.2	AC104024.2	rs140220748-A	0.510572	5E-12		0.016007384	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr17	16908365	16908366	rs28624345	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p11.2	TNFRSF13B	rs28624345-C	0.161207097518593	1E-6	(G_Parasutterella_RNT)	0.172282	[0.1-0.24] unit decrease	Illumina [7711310] (imputed)	N
714	chr17	16912679	16912680	rs7225537	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p11.2	RP11-416I2.1	rs7225537-G	0.466582	9E-11		0.014756068	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr17	16912679	16912680	rs7225537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs7225537-C	0.539479	2E-25				Affymetrix, Illumina [17210439] (imputed)	N
714	chr17	16912679	16912680	rs7225537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17p11.2	NR	rs7225537-C	0.534276	1E-23		0.019463	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
714	chr17	16912679	16912680	rs7225537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17p11.2	RP11-416I2.1	rs7225537-G	0.4661	4E-12		0.02538979	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
714	chr17	16913280	16913281	rs4281782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p11.2	RP11-416I2.1	rs4281782-A	0.467114	1E-17		0.019481298	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
714	chr17	16923672	16923673	rs4452010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17p11.2		rs4452010-C	0.418153	1E-8		0.0191022	[0.013-0.026] unit increase	Illumina [13478928] (imputed)	N
714	chr17	16933403	16933404	rs11867934	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	17p11.2	LOC100128283, TNFRSF13B, MPRIP	rs11867934-C	0.79	7E-6		1.43	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
714	chr17	16945585	16945586	rs78365041	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p11.2		rs78365041-G	0.2	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
714	chr17	16945585	16945586	rs78365041	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p11.2	NR	rs78365041-G	0.166	3E-10				NR [9056863] (imputed)	N
714	chr17	16960977	16960978	rs6502557	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17p11.2	NR	rs6502557-G	0.861939099364214	6E-6	(IGP1)	0.2172	[0.12-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
714	chr17	16971557	16971558	rs4985718	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	17p11.2	NR	rs4985718-?	NR	4E-9	(conditional on round 2)	0.08160772	[0.055-0.109] unit increase novel	Illumina [6108953] (imputed)	N
714	chr17	16974407	16974408	rs7208929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs7208929-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
714	chr17	16974407	16974408	rs7208929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p11.2		rs7208929-?	NR	6E-8				NR [~ 8900000] (imputed)	N
714	chr17	17007351	17007351	rs5819600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p11.2	MPRIP	rs5819600-AG	0.735278	2E-9		0.01506714	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr17	17007351	17007351	rs5819600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17p11.2	MPRIP	rs5819600-AG	0.735269	5E-9		0.014659229	[0.0097-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr17	17017266	17017267	rs2349648	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17p11.2	MPRIP	rs2349648-T	0.3387	2E-8		0.0017	[0.0011-0.0023] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
714	chr17	17034082	17034083	rs8064991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17p11.2		rs8064991-T	NR	2E-11		0.0225	[0.016-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
715	chr17	17068181	17068182	rs61744862	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	MPRIP	rs61744862-A	0.041	7E-8	(IGFBP-3 )	0.04	[NR] ng/mL increase	Illumina [899892]	N
715	chr17	17094538	17094539	rs10852847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17p11.2	NR	rs10852847-G	0.736405	2E-11		0.014134	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
715	chr17	17100053	17100054	rs4985747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17p11.2		rs4985747-T	NR	8E-10		0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
715	chr17	17103012	17103013	rs12939857	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	17p11.2		rs12939857-?	NR	6E-7				Illumina [19057004] (imputed)	N
715	chr17	17125353	17125353	rs35488709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p11.2	FLCN, RP11-45M22.4	rs35488709-TA	0.494186	7E-20		0.02126672	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
715	chr17	17134527	17134528	rs1736213	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17p11.2	FLCN	rs1736213-T	0.445315	1E-14		0.0143663	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
715	chr17	17136890	17136891	rs10459910	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p11.2		rs10459910-?	NR	5E-12		0.014391	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
715	chr17	17142895	17142896	rs12600635	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17p11.2	NR	rs12600635-G	0.145679882058288	4E-7	(IGP41)	0.2221	[0.14-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
715	chr17	17142895	17142896	rs12600635	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17p11.2	NR	rs12600635-G	0.145264718437784	2E-7	(IGP1)	0.2272	[0.14-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
715	chr17	17146367	17146368	rs1624963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	COPS3, AC055811.5, AC055811.1	rs1624963-A	0.557205	9E-12		0.0124456	[0.0084-0.0165] unit decrease	Affymetrix [93095623] (imputed)	N
715	chr17	17160679	17160680	rs376052817	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p11.2	COPS3	rs376052817-G	0.14252	3E-9		0.019079162	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr17	17183973	17183974	rs117743490	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17p11.2	COPS3	rs117743490-C	0.034	2E-8		5.66	z-score increase	Affymetrix [4312306] (imputed)	N
716	chr17	17184096	17184097	rs1029830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p11.2		rs1029830-?	NR	2E-14				NR [~ 8900000] (imputed)	N
716	chr17	17189192	17189193	rs376650813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p11.2	COPS3	rs376650813-A	0.140042	1E-9		0.01971624	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr17	17189192	17189193	rs376650813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	COPS3	rs376650813-A	0.140087	7E-18		0.027929353	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
716	chr17	17208726	17208727	rs8082383	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	17p11.2		rs8082383-T	NR	3E-6		3.6	[1.98-6.53]	Illumina [NR] (imputed)	N
716	chr17	17255539	17255540	rs73981908	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p11.2	NT5M	rs73981908-T	0.0462869283278576	9E-7	(F_Sutterellaceae_HB)	0.883733	[0.53-1.24] unit decrease	Illumina [7711310] (imputed)	N
717	chr17	17342767	17342768	rs12453750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	17p11.2	NR	rs12453750-G	NR	3E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr17	17344121	17344122	rs1880900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17p11.2		rs1880900-C	NR	4E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
717	chr17	17344121	17344122	rs1880900	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	17p11.2	MED9	rs1880900-T	0.4244	3E-6		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
717	chr17	17351642	17351643	rs1242484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	TSEN15P1	rs1242484-C	NR	1E-9		0.0186969	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17351642	17351643	rs1242484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	TSEN15P1	rs1242484-C	NR	2E-9		0.0183081	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17351642	17351643	rs1242484	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17p11.2	MED9	rs1242484-T	0.6852	9E-12		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
717	chr17	17364761	17364762	rs1242508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242508-A	NR	1E-8		0.0324832	[0.021-0.044] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17364761	17364762	rs1242508	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242508-A	NR	1E-8		0.0326373	[0.021-0.044] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17365398	17365399	rs1242507	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p11.2	TSEN15P1	rs1242507-A	0.5613	1E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix [18391927] (imputed)	N
717	chr17	17365398	17365399	rs1242507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs1242507-?	NR	3E-8				NR [~ 8900000] (imputed)	N
717	chr17	17367102	17367103	rs80338266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs80338266-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
717	chr17	17369969	17369970	rs1242511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242511-G	NR	2E-15		0.0264837	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17369969	17369970	rs1242511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242511-G	NR	5E-15		0.0261806	[0.02-0.033] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17369969	17369970	rs1242511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242511-G	NR	1E-8		0.0193355	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
717	chr17	17369969	17369970	rs1242511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p11.2	Y_RNA	rs1242511-G	NR	3E-9		0.0200696	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
717	chr17	17374390	17374391	rs1242492	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	17p11.2	intergenic	rs1242492-C	0.249	3E-6				Illumina [622468]	N
717	chr17	17383763	17383764	rs73292346	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs73292346-C	0.05052	2E-8	(MDH2)	1.301	NR unit increase	Illumina [1671387] (imputed)	N
717	chr17	17387078	17387079	rs1242516	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17p11.2	MED9	rs1242516-C	0.860167	3E-8		0.020609	[0.013-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
717	chr17	17387898	17387899	rs1242518	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17p11.2	NR	rs1242518-T	0.747432	5E-10		0.0204549	[0.014-0.027] unit increase	Affymetrix [16580851] (imputed)	N
717	chr17	17391442	17391443	rs8072971	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	17p11.2	MED9	rs8072971-C	0.1454	9E-7		0.064	[0.039-0.089] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
717	chr17	17393235	17393236	rs1242490	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17p11.2		rs1242490-C	0.7456	7E-14		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
717	chr17	17398277	17398278	rs11545787	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	17p11.2	RASD1	rs11545787-G	0.7518	4E-30		1.0495381		Affymetrix [11880941] (imputed)	N
717	chr17	17398277	17398278	rs11545787	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17p11.2	RASD1	rs11545787-G	0.7518	4E-30		1.0510609		Affymetrix [11880941] (imputed)	N
717	chr17	17398277	17398278	rs11545787	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	17p11.2	RASD1	rs11545787-G	0.76	1E-8		1.08	[1.05-1.11]	Illumina [7427422] (imputed)	N
717	chr17	17399634	17399635	rs2232839	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17p11.2		rs2232839-T	0.2113	2E-21		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
717	chr17	17400048	17400049	rs2232831	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17p11.2	RASD1PEMT	rs2232831-A	0.2589	2E-21		0.0183454	[0.015-0.022] unit increase	Affymetrix [11880941] (imputed)	N
717	chr17	17400971	17400972	rs3760183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RASD1	rs3760183-T	NR	3E-13		0.0332176	[0.024-0.042] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17400971	17400972	rs3760183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RASD1	rs3760183-T	NR	7E-13		0.0327227	[0.024-0.042] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17400971	17400972	rs3760183	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p11.2	RASD1	rs3760183-T	NR	4E-9		0.0270034	[0.018-0.036] unit increase	Affymetrix [321169] (imputed)	N
717	chr17	17401735	17401736	rs3760185	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17p11.2	NR	rs3760185-T	0.2433	5E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
717	chr17	17401735	17401736	rs3760185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17p11.2		rs3760185-?	NR	2E-12				NR [~ 8900000] (imputed)	N
717	chr17	17403984	17403985	rs61398800	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs61398800-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
717	chr17	17407190	17407191	rs8074191	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	17p11.2		rs8074191-T	0.243879	1E-9		0.0281472	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
717	chr17	17407190	17407191	rs8074191	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17p11.2		rs8074191-T	0.243879	6E-9		0.0268897	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
717	chr17	17407815	17407816	rs8074074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17p11.2		rs8074074-T	NR	5E-8		0.0102	[0.0065-0.0139] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
717	chr17	17409559	17409560	rs7946	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	17p11.2	NR	rs7946-T	0.242131711187516	5E-6				NR [9276018] (imputed)	N
717	chr17	17409559	17409560	rs7946	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17p11.2	NR	rs7946-T	NR	6E-13		0.015115585	[0.011-0.019] unit decrease	Illumina [242289]	N
717	chr17	17409559	17409560	rs7946	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	17p11.2	NR	rs7946-T	0.72	3E-9		0.02	unit decrease	Illumina [242289]	N
717	chr17	17415216	17415217	rs3785499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs3785499-T	NR	1E-9		0.0190241	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
717	chr17	17415216	17415217	rs3785499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs3785499-T	NR	1E-9		0.019228	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
717	chr17	17415216	17415217	rs3785499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs3785499-T	NR	2E-9		0.0193841	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
717	chr17	17417807	17417808	rs66637059	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs66637059-T	NR	5E-8		0.022922	[0.015-0.031] unit increase	Affymetrix [323858] (imputed)	N
717	chr17	17420198	17420199	rs4646404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs4646404-A	NR	2E-9		0.0198712	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
717	chr17	17420198	17420199	rs4646404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs4646404-A	NR	4E-10		0.0205846	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
717	chr17	17420198	17420199	rs4646404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs4646404-A	NR	9E-13		0.0241768	[0.018-0.031] unit increase	Affymetrix [323858] (imputed)	N
717	chr17	17420198	17420199	rs4646404	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17p11.2	PEMT	rs4646404-A	0.3318	9E-6		0.0181	[0.01-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr17	17420198	17420199	rs4646404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	17p11.2	NR	rs4646404-A	0.34295575089661	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr17	17420198	17420199	rs4646404	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	17p11.2	NR	rs4646404-A	0.34295575089661	5E-12		0.026232956	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-G	0.6714	1E-11		0.0264	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-G	0.6671	4E-11	(women)	0.0336	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-G	0.6653	1E-11	(EA)	0.0266	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-G	0.6618	5E-11	(EA, women)	0.0337	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-A	0.3391	4E-7	(EA)	0.0196	[0.012-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17420198	17420199	rs4646404	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	PEMT	rs4646404-A	0.3391	3E-9	(EA, women)	0.0304	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
717	chr17	17422767	17422768	rs748196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs748196-T	NR	1E-14		0.0242695	[0.018-0.03] unit increase	Affymetrix [323858] (imputed)	N
717	chr17	17422767	17422768	rs748196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs748196-T	NR	3E-15		0.0247325	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
717	chr17	17422767	17422768	rs748196	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	17p11.2	NR	rs748196-T	0.4663	2E-18		0.0158	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
717	chr17	17424302	17424303	rs11657678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs11657678-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
717	chr17	17424332	17424333	rs1109859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs1109859-G	NR	5E-9		0.0247051	[0.016-0.033] unit increase	Affymetrix [323858] (imputed)	N
717	chr17	17424332	17424333	rs1109859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs1109859-G	NR	7E-9		0.0244641	[0.016-0.033] unit increase	Affymetrix [127266] (imputed)	N
717	chr17	17425068	17425069	rs11658872	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17p11.2	PEMT	rs11658872-C	0.943302	1E-15		0.0331001	[0.025-0.041] unit increase	Affymetrix [NR] (imputed)	N
717	chr17	17425630	17425631	rs897453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	PEMT	rs897453-T	NR	6E-10		0.0174959	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
717	chr17	17425630	17425631	rs897453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs897453-T	NR	1E-9		0.0172387	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	17p11.2	PEMT	rs897453-C	0.5649	3E-6		0.0245	[0.014-0.035] unit increase	Affymetrix, Illumina [~ 228985]	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	17p11.2	PEMT	rs897453-C	0.5387	2E-6		0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [at least 228985]	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	17p11.2	PEMT	rs897453-C	0.5751	1E-6		0.0262	[0.016-0.037] unit increase	Affymetrix, Illumina [at least 228985]	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	17p11.2	PEMT	rs897453-C	0.5395	1E-6		0.0271	[0.016-0.038] unit increase	Affymetrix, Illumina [at least 228985]	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	17p11.2	PEMT	rs897453-C	0.5686	4E-11		0.025	[0.018-0.032] unit increase	Affymetrix, Illumina [at least 228985]	N
717	chr17	17425630	17425631	rs897453	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (recessive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	17p11.2	PEMT	rs897453-C	0.5382	1E-10		0.0258	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 228985]	N
717	chr17	17428277	17428278	rs11869142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs11869142-T	NR	4E-12		0.0203999	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
717	chr17	17428277	17428278	rs11869142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs11869142-T	NR	2E-10		0.0197264	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	3E-8		0.0496292	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	2E-10		0.0559675	[0.039-0.073] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-10		0.0557209	[0.038-0.073] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-9		0.0526735	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	1E-10		0.0562641	[0.039-0.073] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	6E-10		0.0546795	[0.037-0.072] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	2E-8		0.0505493	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17p11.2		rs8078513-C	0.94265	2E-8		0.049439	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-8		0.0494337	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	3E-11		0.0577946	[0.041-0.075] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	1E-9		0.0540855	[0.037-0.072] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	1E-10		0.0559479	[0.039-0.073] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	3E-11		0.0578478	[0.041-0.075] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-9		0.0526184	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	2E-10		0.056536	[0.039-0.074] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-8		0.0495614	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	8E-9		0.0515149	[0.034-0.069] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	7E-9		0.0521656	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	6E-11		0.0581267	[0.041-0.076] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	3E-8		0.0496243	[0.032-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	4E-11		0.0588577	[0.041-0.076] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	6E-11		0.0575474	[0.04-0.075] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs8078513-C	0.942651	2E-11		0.058955	[0.042-0.076] unit decrease	NR [11722792] (imputed)	N
717	chr17	17431207	17431208	rs8078513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	PEMT	rs8078513-A	NR	3E-13		0.0452087	[0.033-0.057] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17431207	17431208	rs8078513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8078513-A	NR	3E-13		0.0450841	[0.033-0.057] unit increase	Affymetrix [319769] (imputed)	N
717	chr17	17431207	17431208	rs8078513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8078513-A	NR	5E-11		0.042243	[0.03-0.055] unit decrease	Affymetrix [321788] (imputed)	N
717	chr17	17431207	17431208	rs8078513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	PEMT	rs8078513-A	0.05659	3E-10		0.03078406	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr17	17431207	17431208	rs8078513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17p11.2	NR	rs8078513-A	0.0523	1E-12		0.029	[0.021-0.037] unit increase	NR [~ 27400000] (imputed)	N
717	chr17	17431207	17431208	rs8078513	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17p11.2	NR	rs8078513-A	0.0523	1E-8		0.023	[0.015-0.031] unit increase	NR [~ 27400000] (imputed)	N
717	chr17	17432219	17432220	rs74454529	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17p11.2	PEMT	rs74454529-G	0.940059	1E-10		0.0284613	[0.02-0.037] unit decrease	Affymetrix [NR] (imputed)	N
717	chr17	17432455	17432456	rs16961845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17p11.2		rs16961845-C	0.937684	2E-10		0.0512934	[0.035-0.067] unit decrease	NR [11722792] (imputed)	N
717	chr17	17432455	17432456	rs16961845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17p11.2		rs16961845-C	0.937684	1E-10		0.0528171	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
717	chr17	17432455	17432456	rs16961845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs16961845-C	0.937684	2E-8		0.0461545	[0.03-0.062] unit decrease	NR [11722792] (imputed)	N
717	chr17	17432455	17432456	rs16961845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17p11.2		rs16961845-C	0.937684	3E-9		0.048785	[0.033-0.065] unit increase	NR [11722792] (imputed)	N
717	chr17	17432455	17432456	rs16961845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17p11.2		rs16961845-C	0.937684	8E-10		0.0498709	[0.034-0.066] unit increase	NR [11722792] (imputed)	N
718	chr17	17433590	17433591	rs10401038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs10401038-C	0.937805	2E-10		0.0527842	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433590	17433591	rs10401038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs10401038-C	0.937805	2E-9		0.0481191	[0.032-0.064] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937795	3E-8		0.0460087	[0.03-0.062] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937797	3E-8		0.045315	[0.029-0.061] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937795	2E-10		0.0524774	[0.036-0.069] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937797	3E-8		0.0465726	[0.03-0.063] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937795	6E-9		0.0479069	[0.032-0.064] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937795	7E-9		0.0475407	[0.031-0.064] unit decrease	NR [11722792] (imputed)	N
718	chr17	17433958	17433959	rs9910747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9910747-A	0.937795	5E-10		0.0511984	[0.035-0.067] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	7E-10		0.0503376	[0.034-0.066] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	9E-11		0.0535068	[0.037-0.07] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	9E-11		0.0535431	[0.037-0.07] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	9E-10		0.0503399	[0.034-0.066] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	3E-10		0.0516148	[0.036-0.068] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	4E-10		0.0515168	[0.035-0.068] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	2E-10		0.0522963	[0.036-0.068] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	17p11.2		rs9889584-G	0.9378	7E-10		0.0489684	[0.033-0.065] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	1E-10		0.0531135	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434140	17434141	rs9889584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	17p11.2		rs9889584-G	0.937797	8E-11		0.0536309	[0.037-0.07] unit decrease	NR [11722792] (imputed)	N
718	chr17	17434650	17434651	rs71926466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17p11.2		rs71926466-G	NR	1E-11		0.0321	[0.023-0.041] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
718	chr17	17438317	17438318	rs12941371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs12941371-G	NR	3E-17		0.0273079	[0.021-0.034] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17440822	17440823	rs7214152	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17p11.2		rs7214152-C	0.937644	6E-10		0.0498976	[0.034-0.066] unit decrease	NR [11722792] (imputed)	N
718	chr17	17449916	17449917	rs11651280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17p11.2		rs11651280-G	0.938936	4E-9		0.0490125	[0.033-0.065] unit decrease	NR [11722792] (imputed)	N
718	chr17	17453066	17453067	rs11656215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+OAc]1-/Phosphatidylserine_44:6_[M-H]1- levels	13,814 British ancestry individuals	NA	17p11.2		rs11656215-C	NR	4E-11		0.0695089	[0.049-0.09] unit increase	Affymetrix [87696910] (imputed)	N
718	chr17	17453066	17453067	rs11656215	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:6_[M+OAc]1-/Phosphatidylserine_44:5_[M-H]1- levels	13,814 British ancestry individuals	NA	17p11.2		rs11656215-C	NR	2E-11		0.0674725	[0.048-0.087] unit increase	Affymetrix [87696910] (imputed)	N
718	chr17	17453066	17453067	rs11656215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs11656215-C	NR	2E-8		0.0163998	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
718	chr17	17453066	17453067	rs11656215	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p11.2	PEMT	rs11656215-T	0.4756	8E-13		0.0201	[0.015-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
718	chr17	17455191	17455192	rs8075019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	PEMT	rs8075019-A	NR	2E-15		0.0344627	[0.026-0.043] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17455191	17455192	rs8075019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8075019-A	NR	2E-15		0.0342887	[0.026-0.043] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17455191	17455192	rs8075019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8075019-A	NR	5E-8		0.0245261	[0.016-0.033] unit decrease	Affymetrix [321788] (imputed)	N
718	chr17	17455191	17455192	rs8075019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8075019-A	NR	4E-8		0.0239267	[0.015-0.032] unit increase	Affymetrix [321169] (imputed)	N
718	chr17	17455191	17455192	rs8075019	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17p11.2	PEMT	rs8075019-G	0.876268	2E-10		0.0191152	[0.013-0.025] unit increase	Affymetrix [NR] (imputed)	N
718	chr17	17458352	17458353	rs7215055	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17p11.2	PEMT	rs7215055-A	0.937108	2E-21		0.0391687	[0.031-0.047] unit decrease	Affymetrix [NR] (imputed)	N
718	chr17	17462629	17462630	rs11654777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17p11.2		rs11654777-G	NR	8E-17		0.0404	[0.031-0.05] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
718	chr17	17464076	17464077	rs34075240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs34075240-G	NR	3E-9		0.0221832	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
718	chr17	17470525	17470526	rs11658311	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	17p11.2	PEMT	rs11658311-C	NR	7E-6		0.7719	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
718	chr17	17474142	17474143	rs4646351	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_40:7_[M+OAc]1-/Phosphatidylserine_44:6_[M-H]1- levels	13,814 British ancestry individuals	NA	17p11.2		rs4646351-C	NR	3E-11		0.0714786	[0.05-0.092] unit increase	Affymetrix [87696910] (imputed)	N
718	chr17	17476790	17476791	rs9904004	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17p11.2	PEMT	rs9904004-?	NR	2E-15		0.0437	[0.034-0.053] unit increase	Affymetrix [5701386] (imputed)	N
718	chr17	17477579	17477579	rs139970591	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		17p11.2	PEMT	rs139970591-A	NR	1E-12		0.009892	[0.0058-0.014] nmol/l increase	NR [19000000] (imputed)	N
718	chr17	17480186	17480187	rs8068641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	PEMT	rs8068641-G	NR	4E-9		0.0285501	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17480186	17480187	rs8068641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	PEMT	rs8068641-G	NR	6E-9		0.0282911	[0.019-0.038] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17484933	17484934	rs9944423	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	17p11.2	PEMT	rs9944423-A	0.9319	8E-6		0.0731	[0.041-0.105] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
718	chr17	17493271	17493272	rs4646342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs4646342-A	NR	8E-16		0.0262147	[0.02-0.033] unit increase	Affymetrix [323858] (imputed)	N
718	chr17	17493271	17493272	rs4646342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs4646342-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
718	chr17	17493271	17493272	rs4646342	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17p11.2	NA	rs4646342-A	0.4535	7E-13		0.013	[0.0095-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
718	chr17	17494545	17494545	rs777657075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	PEMT	rs777657075-G	NR	2E-10		0.0199951	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17494545	17494545	rs777657075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	PEMT	rs777657075-G	NR	1E-10		0.0202476	[0.014-0.026] unit decrease	Affymetrix [127266] (imputed)	N
718	chr17	17501189	17501190	rs57928542	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs57928542-C	NR	2E-9		0.0256911	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
718	chr17	17502221	17502222	rs12452584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs12452584-G	NR	6E-9		0.0170691	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
718	chr17	17509991	17509992	rs56745821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs56745821-A	NR	6E-9		0.0201363	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
718	chr17	17513857	17513858	rs4925027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs4925027-T	NR	4E-13		0.0249256	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17514847	17514848	rs9898216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17p11.2		rs9898216-G	0.39406	5E-8		0.0227049	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
718	chr17	17515890	17515891	rs12453139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs12453139-G	NR	5E-13		0.024831	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
718	chr17	17516022	17516023	rs12150263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs12150263-A	NR	6E-11		0.0274183	[0.019-0.036] unit decrease	Affymetrix [319769] (imputed)	N
718	chr17	17516022	17516023	rs12150263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs12150263-A	NR	2E-10		0.0267785	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
718	chr17	17516022	17516023	rs12150263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs12150263-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
718	chr17	17525475	17525476	rs11869492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs11869492-T	NR	9E-12		0.0219746	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
718	chr17	17525475	17525476	rs11869492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs11869492-T	NR	4E-12		0.0223302	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
718	chr17	17525475	17525476	rs11869492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs11869492-T	NR	1E-9		0.0199861	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17543099	17543100	rs58251514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs58251514-T	NR	7E-13		0.0206463	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
718	chr17	17543099	17543100	rs58251514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	RP11-524F11.2	rs58251514-T	NR	3E-11		0.019883	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
718	chr17	17543411	17543412	rs11659047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs11659047-T	NR	3E-10		0.0425524	[0.029-0.056] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17543721	17543722	rs12936587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p11.2		rs12936587-?	NR	6E-24				NR [~ 8900000] (imputed)	N
718	chr17	17543721	17543722	rs12936587	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17p11.2	NR	rs12936587-G	0.51	8E-29		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
718	chr17	17543721	17543722	rs12936587	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17p11.2	NR	rs12936587-G	0.51	5E-8				Affymetrix [2446094] (imputed)	N
718	chr17	17543721	17543722	rs12936587	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17p11.2	intergenic	rs12936587-A	0.4379	1E-9		0.032	[0.022-0.042] unit decrease	Affymetrix [at least 7947838] (imputed)	N
718	chr17	17543721	17543722	rs12936587	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17p11.2	intergenic	rs12936587-A	0.4335	3E-10		0.0361	[0.025-0.047] unit decrease	NR [8041861] (imputed)	N
718	chr17	17543721	17543722	rs12936587	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	RAI1	rs12936587-A	0.4424	8E-6	(EA)	0.0164	[0.0091-0.0237] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
718	chr17	17543721	17543722	rs12936587	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	RAI1	rs12936587-A	0.4424	3E-8	(EA, men)	0.0277	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
718	chr17	17543721	17543722	rs12936587	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	17p11.2	RASD1, PEMT, RAI1	rs12936587-?		2E-10				Affymetrix, Illumina [up to 2500000] (imputed)	N
718	chr17	17543721	17543722	rs12936587	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	17p11.2	RASD1, PEMT, RAI1	rs12936587-?	NR	2E-7		1.0753	[1.04-1.11]	Illumina [575000] (imputed)	N
718	chr17	17543721	17543722	rs12936587	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17p11.2	RASD1, SMCR3, PEMT	rs12936587-G	0.56	4E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
718	chr17	17543845	17543846	rs9891340	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17p11.2	SMCR2	rs9891340-T	0.5517	8E-15		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
718	chr17	17544703	17544704	rs12449964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs12449964-T	NR	7E-13		0.0225472	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17544703	17544704	rs12449964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs12449964-T	NR	3E-13		0.0229627	[0.017-0.029] unit decrease	Affymetrix [127266] (imputed)	N
718	chr17	17544703	17544704	rs12449964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs12449964-T	NR	2E-16		0.0264789	[0.02-0.033] unit increase	Affymetrix [323858] (imputed)	N
718	chr17	17544703	17544704	rs12449964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RP11-524F11.2	rs12449964-T	NR	2E-9		0.01852	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
718	chr17	17544703	17544704	rs12449964	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	17p11.2	RASD1, PEMT, RAI1	rs12449964-?		2E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
718	chr17	17561093	17561094	rs1869771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	SMCR2	rs1869771-A	NR	1E-8		0.0178899	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
718	chr17	17561093	17561094	rs1869771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	SMCR2	rs1869771-A	NR	8E-9		0.0180415	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	9E-9	(246 ms)	0.0320081	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	4E-9	(244 ms)	0.0328337	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	4E-8	(248 ms)	0.0306032	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	3E-8	(254 ms)	0.0305082	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	3E-8	(250 ms)	0.030711	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	3E-8	(240 ms)	0.0298797	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	2E-8	(252 ms)	0.0311025	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17569285	17569286	rs4925095	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17p11.2	RAI1	rs4925095-G	0.510149	1E-8	(242 ms)	0.0312162	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
719	chr17	17573186	17573187	rs9904468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17p11.2		rs9904468-G	NR	6E-11		0.012	[0.0085-0.0155] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
719	chr17	17573186	17573187	rs9904468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	17p11.2		rs9904468-?	NR	6E-12				NR [~ 8900000] (imputed)	N
719	chr17	17585130	17585130	rs139937261	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	17p11.2	RAI1	rs139937261-C	0.487688	1E-10		0.01491	[0.01-0.019] unit decrease	Affymetrix [19400838] (imputed)	N
719	chr17	17588904	17588905	rs73981021	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs73981021-A	0.01045	5E-15	(GPI)	1.488	NR unit increase	Illumina [1671387] (imputed)	N
719	chr17	17591758	17591759	rs7214245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17p11.2		rs7214245-A	NR	4E-10		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
719	chr17	17591802	17591802	rs10687766	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	17p11.2	RAI1	rs10687766-G	0.508	4E-11		0.346	[0.24-0.45] unit increase	Affymetrix [NR] (imputed)	N
719	chr17	17593452	17593453	rs9897596	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	17p11.2	RAI1, PEMT, RASD1	rs9897596-T	0.523	3E-6		1.04	[1.02-1.06]	Affymetrix [9149595] (imputed)	N
719	chr17	17607316	17607317	rs8071107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RAI1	rs8071107-T	NR	1E-9		0.0201288	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
719	chr17	17607316	17607317	rs8071107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	RAI1	rs8071107-T	NR	6E-10		0.0205054	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
719	chr17	17610403	17610404	rs34717629	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	17p11.2	RAI1	rs34717629-A	0.21435499999999996	8E-9		0.022126	[0.015-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
719	chr17	17616618	17616619	rs4924813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p11.2	Intergenic	rs4924813-A	0.1293	3E-10	(MTAG)	0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
719	chr17	17621006	17621007	rs71367412	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17p11.2	RAI1	rs71367412-?	NR	6E-9		0.0181	[0.013-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
719	chr17	17622665	17622666	rs8075153	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17p11.2	RAI1	rs8075153-T	0.434	5E-8		0.0066	[0.0041-0.0091] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
719	chr17	17622665	17622666	rs8075153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	RAI1	rs8075153-T	NR	4E-12		0.022337	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
719	chr17	17628382	17628383	rs112546679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs112546679-?	NR	2E-9				NR [~ 8900000] (imputed)	N
719	chr17	17631793	17631794	rs62064086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17p11.2		rs62064086-?	NR	2E-10				NR [~ 8900000] (imputed)	N
719	chr17	17632477	17632478	rs7224739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RAI1	rs7224739-A	NR	1E-10		0.0202767	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
719	chr17	17632477	17632478	rs7224739	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	RAI1	rs7224739-A	NR	7E-11		0.020548	[0.014-0.027] unit decrease	Affymetrix [127266] (imputed)	N
719	chr17	17632918	17632919	rs7209595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RAI1	rs7209595-C	NR	6E-11		0.0186125	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
719	chr17	17632918	17632919	rs7209595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RAI1	rs7209595-C	NR	7E-11		0.0185216	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
719	chr17	17632918	17632919	rs7209595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	RAI1	rs7209595-C	NR	4E-9		0.0173707	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
719	chr17	17638760	17638761	rs7219213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17p11.2		rs7219213-?	NR	9E-12				NR [~ 8900000] (imputed)	N
719	chr17	17644363	17644364	rs12942059	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17p11.2	RAI1	rs12942059-A	0.4124	2E-8	(EA)	0.002	[0.0012-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
719	chr17	17644363	17644364	rs12942059	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17p11.2	RAI1	rs12942059-A	0.379	6E-10		0.0019	[0.0013-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
719	chr17	17645950	17645951	rs720856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RAI1	rs720856-G	NR	2E-10		0.0218888	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
719	chr17	17645950	17645951	rs720856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RAI1	rs720856-G	NR	5E-11		0.0224832	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
719	chr17	17647769	17647770	rs76381434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs76381434-A	0.939122	1E-10		0.0525718	[0.037-0.069] unit decrease	NR [11722792] (imputed)	N
719	chr17	17647769	17647770	rs76381434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs76381434-A	0.939122	4E-8		0.0453845	[0.029-0.062] unit increase	NR [11722792] (imputed)	N
719	chr17	17650977	17650978	rs9900803	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17p11.2		rs9900803-C	0.31	4E-11				Affymetrix [10369434] (imputed)	N
719	chr17	17653410	17653411	rs12945601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	RAI1	rs12945601-T	NR	3E-10		0.0190948	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
719	chr17	17653410	17653411	rs12945601	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17p11.2	RAI1	rs12945601-T	0.386396556423368	2E-9		0.048	[0.032-0.064] unit increase	NR [5035015] (imputed)	N
719	chr17	17654318	17654319	rs11656775	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	17p11.2	NR	rs11656775-A	0.3223	7E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
719	chr17	17661801	17661802	rs4925109	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17p11.2	RAI1	rs4925109-A	0.3164	3E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
719	chr17	17661801	17661802	rs4925109	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p11.2		rs4925109-A	0.3172	2E-10		0.0096	[0.0067-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
719	chr17	17680272	17680273	rs941446	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17p11.2	NR	rs941446-T	0.6323449999999999	4E-10		0.00843126	[0.0058-0.011] unit increase	Affymetrix [16578495] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	3E-8		0.0310252	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	4E-8		0.0306782	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	3E-8		0.0310926	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	2E-8		0.0318575	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	2E-8		0.0316789	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
719	chr17	17683396	17683396	rs71152902	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17p11.2		rs71152902-T	0.120709	5E-9		0.0329617	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
719	chr17	17687896	17687897	rs12451589	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p11.2	NR	rs12451589-A	NR	2E-11		0.0356	[0.025-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
720	chr17	17696754	17696755	rs11649804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RAI1	rs11649804-A	NR	3E-8		0.0190589	[0.012-0.026] unit increase	Affymetrix [323858] (imputed)	N
720	chr17	17696754	17696755	rs11649804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	RAI1	rs11649804-A	NR	4E-8		0.0189198	[0.012-0.026] unit increase	Affymetrix [127266] (imputed)	N
720	chr17	17696754	17696755	rs11649804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17p11.2	RAI1	rs11649804-A	0.290816	3E-16		0.019931018	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
720	chr17	17696754	17696755	rs11649804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs11649804-A	0.410973	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
720	chr17	17696754	17696755	rs11649804	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	17p11.2	NR	rs11649804-?	NR	3E-7		0.1304	[0.08-0.181] unit increase	Illumina [at least 560000] (imputed)	N
720	chr17	17697098	17697099	rs11078398	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17p11.2	NR	rs11078398-?	NR	1E-6		0.0088201	[0.0053-0.0124] unit increase	Affymetrix [805426] (imputed)	N
720	chr17	17698253	17698254	rs8067439	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17p11.2		rs8067439-G	0.352	1E-17				Affymetrix [10369434] (imputed)	N
720	chr17	17707104	17707105	rs3818717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	RAI1	rs3818717-T	NR	3E-17		0.0243551	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
720	chr17	17707104	17707105	rs3818717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	RAI1	rs3818717-T	NR	5E-18		0.0249696	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
720	chr17	17707104	17707105	rs3818717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p11.2	RAI1	rs3818717-T	NR	6E-10		0.0180259	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
720	chr17	17707104	17707105	rs3818717	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17p11.2		rs3818717-?	NR	4E-23				NR [~ 8900000] (imputed)	N
720	chr17	17707104	17707105	rs3818717	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p11.2	RAI1	rs3818717-C	0.5924	1E-12		0.02605308	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
720	chr17	17711269	17711270	rs4925114	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	17p11.2		rs4925114-?	NR	3E-9		0.0204	NR unit decrease	NR [4428082] (imputed)	N
720	chr17	17711269	17711270	rs4925114	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p11.2	RAI1	rs4925114-A	NR	2E-8		5.598	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
720	chr17	17711269	17711270	rs4925114	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	17p11.2	ATPAF2, GID4, LRRC48, MIR33B, MIR6777, RAI1, SMCR5, SREBF1, TOM1L2	rs4925114-?	NR	3E-8		1.058	[1.04-1.08]	Illumina [8000000] (imputed)	N
720	chr17	17711269	17711270	rs4925114	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17p11.2	RAI1	rs4925114-G	0.6	3E-8		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
720	chr17	17715100	17715101	rs11868035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p11.2	NR	rs11868035-A	0.294275	3E-11		0.014161	[0.01-0.0183] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
720	chr17	17715100	17715101	rs11868035	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	17p11.2	SREBF1, RAI1	rs11868035-G	0.69	6E-8		1.18	[1.11-1.25]	Illumina [522782]	N
720	chr17	17715316	17715317	rs2297508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p11.2	SREBF1	rs2297508-G	0.648715	1E-22		0.022768706	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
720	chr17	17715316	17715317	rs2297508	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17p11.2	NR	rs2297508-G	0.632	2E-12		0.0334	[0.024-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
720	chr17	17715316	17715317	rs2297508	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p11.2	NR	rs2297508-G	0.5583	2E-14		0.0305	[0.023-0.038] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
720	chr17	17715316	17715317	rs2297508	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	17p11.2	SREBF1	rs2297508-G	0.6489	3E-9		0.0092	[0.0063-0.0121] unit increase	Affymetrix [~ 7740000] (imputed)	N
720	chr17	17716530	17716531	rs12941356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	SREBF1	rs12941356-A	NR	8E-9		0.0184559	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
720	chr17	17716530	17716531	rs12941356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	SREBF1	rs12941356-A	NR	6E-9		0.0185851	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
720	chr17	17716530	17716531	rs12941356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	SREBF1	rs12941356-A	NR	1E-13		0.0215238	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
720	chr17	17716530	17716531	rs12941356	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	SREBF1	rs12941356-A	NR	2E-11		0.0220382	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
720	chr17	17716530	17716531	rs12941356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17p11.2	SREBF1	rs12941356-G	0.589185	1E-20		0.020925617	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
720	chr17	17716530	17716531	rs12941356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs12941356-G	0.463769	5E-20				Affymetrix, Illumina [24649327] (imputed)	N
720	chr17	17716530	17716531	rs12941356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17p11.2	NR	rs12941356-G	0.5872	2E-21		0.018704	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
720	chr17	17716530	17716531	rs12941356	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	17p11.2	SREBF1, RAI	rs12941356-G	0.42	5E-8		0.1809	[0.12-0.25] unit decrease	Affymetrix [19941912] (imputed)	N
720	chr17	17724466	17724466	rs112966033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17p11.2	NR	rs112966033-TACACAC	0.605925	1E-37		0.0159972	[0.014-0.018] unit increase	Affymetrix [16585854] (imputed)	N
720	chr17	17724466	17724466	rs112966033	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17p11.2	NR	rs112966033-TACACAC	0.605925	6E-27		0.0155118	[0.013-0.018] unit increase	Affymetrix [16585866] (imputed)	N
720	chr17	17724788	17724789	rs11656665	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	17p11.2	SREBF1	rs11656665-?		8E-10				Illumina [5041948] (imputed)	N
720	chr17	17726647	17726648	rs12953299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17p11.2		rs12953299-G	NR	1E-13		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
720	chr17	17732318	17732319	rs9894257	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p11.2		rs9894257-C	0.41	2E-15		7.94	z score increase	Affymetrix [9061022] (imputed)	N
720	chr17	17737257	17737258	rs12938501	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p11.2	NR	rs12938501-A	0.3437	8E-17				NR [9056863] (imputed)	N
720	chr17	17737856	17737857	rs12941068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17p11.2	SREBF1	rs12941068-A	0.285284	7E-10		0.015502571	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
720	chr17	17738859	17738860	rs187408367	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17p11.2	NR	rs187408367-A	0.0051	8E-7	(EA)	0.2318	[0.14-0.32] unit increase	Illumina [~ 11800000] (imputed)	N
720	chr17	17741668	17741669	rs12946746	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p11.2		rs12946746-T	0.42	4E-16		8.15	z score increase	Affymetrix [9061022] (imputed)	N
720	chr17	17741874	17741875	rs7359509	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p11.2	NR	rs7359509-A	0.3445	4E-8				NR [9056863] (imputed)	N
720	chr17	17750906	17750907	rs7501812	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	17p11.2	SREBF1, C17orf39, TOM1L2, ATAPF2	rs7501812-G	0.41	1E-10				Illumina [2276811] (imputed)	N
720	chr17	17751477	17751478	rs1108646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p11.2		rs1108646-G	NR	7E-39		0.0299	[0.025-0.034] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
720	chr17	17752638	17752639	rs147747231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs147747231-?	NR	1E-18				NR [~ 8900000] (imputed)	N
720	chr17	17752808	17752809	rs12951376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	TOM1L2	rs12951376-T	NR	1E-9		0.0187581	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
720	chr17	17752808	17752809	rs12951376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	TOM1L2	rs12951376-T	NR	2E-10		0.0196265	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
720	chr17	17753845	17753846	rs9893690	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17p11.2	NR	rs9893690-T	0.643	1E-9		0.00841086	[0.0057-0.0111] unit increase	NR [~ 9732723] (imputed)	N
720	chr17	17762246	17762247	rs11658309	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	17p11.2	NR	rs11658309-?	NR	5E-7		0.0286	[0.017-0.04] unit decrease	Illumina [at least 560000] (imputed)	N
720	chr17	17774421	17774422	rs9908017	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17p11.2	NR	rs9908017-T	0.637	4E-9		0.00675553	[0.0045-0.009] unit increase	NR [9732723] (imputed)	N
720	chr17	17776388	17776389	rs8080061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17p11.2		rs8080061-?	NR	1E-8				NR [~ 8900000] (imputed)	N
720	chr17	17781341	17781342	rs191340185	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	17p11.2		rs191340185-?	NR	1E-5		1.98226	[1.68-2.29]	NR [675173]	N
720	chr17	17804724	17804725	rs8070128	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p11.2	TOM1L2	rs8070128-T	0.5763	2E-11		0.0394	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
721	chr17	17843395	17843396	rs8070624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	TOM1L2	rs8070624-A	NR	1E-9		0.0181457	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
721	chr17	17843395	17843396	rs8070624	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p11.2	NR	rs8070624-A	0.4425	2E-8	(European)	0.0357	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
721	chr17	17853594	17853595	rs8076747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17p11.2		rs8076747-C	0.625	5E-16				Affymetrix [10369434] (imputed)	N
721	chr17	17882058	17882059	rs3935506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p11.2		rs3935506-?	NR	1E-10				NR [~ 8900000] (imputed)	N
721	chr17	17884546	17884547	rs4072738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	LRRC48, ATPAF2, AC087163.3	rs4072738-C	NR	1E-8		0.0177096	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
721	chr17	17884800	17884801	rs4925133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	LRRC48, ATPAF2, AC087163.3	rs4925133-G	NR	5E-10		0.018787	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
721	chr17	17884800	17884801	rs4925133	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	LRRC48, ATPAF2, AC087163.3	rs4925133-G	NR	1E-10		0.0195444	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
721	chr17	17906519	17906520	rs62072049	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p11.2	NR	rs62072049-T	0.5897	1E-9		0.036	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
721	chr17	17912547	17912548	rs4365348	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	17p11.2	NR	rs4365348-?	NR	7E-9		1.06141	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
721	chr17	17924059	17924060	rs8079418	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17p11.2	NR	rs8079418-C	0.612382	4E-65		0.0135729	[0.012-0.015] unit increase	Affymetrix [16582909] (imputed)	N
721	chr17	17924059	17924060	rs8079418	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17p11.2	NR	rs8079418-C	0.612382	8E-44		0.0128554	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
721	chr17	17924059	17924060	rs8079418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	17p11.2	NR	rs8079418-?	NR	7E-7		0.0277	[0.017-0.039] unit decrease	Illumina [at least 560000] (imputed)	N
721	chr17	17947709	17947710	rs2955382	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	17p11.2	Intergenic	rs2955382-T	0.54	7E-9				Illumina [2276811] (imputed)	N
721	chr17	17949801	17949802	rs12948749	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	17p11.2		rs12948749-?	NR	2E-9		0.0182	NR unit decrease	NR [4484088] (imputed)	N
721	chr17	17952438	17952439	rs11652894	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17p11.2	GID4	rs11652894-C	0.437104	5E-9		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
721	chr17	17956458	17956459	rs11658257	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	17p11.2	GID4, ATPAF2	rs11658257-?		2E-8				NR [6786993] (imputed)	N
721	chr17	17956458	17956459	rs11658257	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p11.2	C17orf39	rs11658257-G	NR	8E-9	(EA)	1.068	[1.05-1.09]	Illumina [6627481] (imputed)	N
722	chr17	17958401	17958402	rs8082590	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	17p11.2	NR	rs8082590-?	NR	3E-8				Illumina [up to 5582932] (imputed)	N
722	chr17	17958401	17958402	rs8082590	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p11.2	C17orf39	rs8082590-G	NR	9E-10		1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
722	chr17	17958401	17958402	rs8082590	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	17p11.2	ATPAF2, C17ORF39, DRG2, LRRC48, RAI1, SREBF1, TOM1L2	rs8082590-G	NR	7E-10		1.0683761	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
722	chr17	17958401	17958402	rs8082590	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p11.2	NR	rs8082590-G	NR	2E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
722	chr17	17958401	17958402	rs8082590	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	17p11.2	ATPAF2, DRG2, GID4, LRRC48, MYO15A, RAI1, SREBF1, TOM1L2	rs8082590-G	0.386	2E-8		1.0649627	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
722	chr17	17973616	17973617	rs2955373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17p11.2	GID4	rs2955373-C	NR	3E-8		0.0184966	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
722	chr17	17973616	17973617	rs2955373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17p11.2	GID4	rs2955373-C	NR	4E-8		0.0183709	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
722	chr17	17974886	17974887	rs2955360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	GID4	rs2955360-G	NR	7E-15		0.0227074	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
722	chr17	17974886	17974887	rs2955360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	GID4	rs2955360-G	NR	6E-16		0.0235691	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
722	chr17	17975453	17975454	rs76416971	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	17p11.2		rs76416971-G	0.95	9E-6		0.22	[0.12-0.32] unit decrease	Illumina [5305352] (imputed)	N
722	chr17	17980670	17980671	rs12943914	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p11.2	NR	rs12943914-?	NR	3E-6		4.649	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
722	chr17	17988590	17988591	rs12952818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	DRG2	rs12952818-G	NR	7E-11		0.01933	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
722	chr17	17988590	17988591	rs12952818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17p11.2	DRG2	rs12952818-G	NR	2E-8		0.0167442	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
722	chr17	17989943	17989944	rs117080213	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17p11.2		rs117080213-?	NR	1E-9				NR [9705931] (imputed)	N
722	chr17	17995165	17995166	rs12950562	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17p11.2	NR	rs12950562-T	0.6140129999999999	2E-28		0.0120878	[0.0098-0.0143] unit increase	Affymetrix [16582621] (imputed)	N
722	chr17	17995165	17995166	rs12950562	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17p11.2	NR	rs12950562-T	0.6140129999999999	7E-21		0.0110236	[0.0086-0.0134] unit increase	Affymetrix [16582614] (imputed)	N
722	chr17	17997606	17997607	rs140494697	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17p11.2	NR	rs140494697-T	0.006	4E-6	(EA)	0.2014	[0.12-0.29] unit increase	Illumina [~ 11800000] (imputed)	N
722	chr17	18000320	18000321	rs741783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	DRG2	rs741783-A	NR	5E-8		0.0225946	[0.014-0.031] unit increase	Affymetrix [323858] (imputed)	N
722	chr17	18008446	18008447	rs712265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17p11.2	DRG2	rs712265-G	NR	5E-9		0.019248	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
722	chr17	18012729	18012730	rs854765	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17p11.2	NR	rs854765-T	0.4442	2E-8		0.0328	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
722	chr17	18030523	18030524	rs854793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	MYO15A	rs854793-A	NR	1E-8		0.019165	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
722	chr17	18030523	18030524	rs854793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p11.2	NR	rs854793-A	NR	1E-14		0.0228	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
722	chr17	18030523	18030524	rs854793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p11.2	NR	rs854793-A	NR	1E-17		0.0246	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
722	chr17	18031367	18031368	rs854788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	MYO15A	rs854788-G	NR	3E-9		0.0177942	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
722	chr17	18031367	18031368	rs854788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs854788-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
722	chr17	18031367	18031368	rs854788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p11.2	NR	rs854788-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
722	chr17	18036282	18036283	rs854786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	MYO15A	rs854786-G	NR	1E-8		0.017542	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
722	chr17	18036282	18036283	rs854786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	MYO15A	rs854786-G	NR	2E-9		0.018328	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
722	chr17	18036282	18036283	rs854786	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	17p11.2	MYO15A	rs854786-?	0.31920000000000004	1E-8		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
722	chr17	18040689	18040690	rs854784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	MYO15A	rs854784-C	NR	3E-9		0.016989	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
722	chr17	18041506	18041507	rs2280777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	17p11.2		rs2280777-?	NR	8E-6		0.95273	[0.93-0.97]	NR [685523]	N
722	chr17	18041506	18041507	rs2280777	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs2280777-C	0.4826	3E-8	(SHMT1)	0.4565	NR unit decrease	Illumina [1671387] (imputed)	N
722	chr17	18048607	18048608	rs854776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs854776-C	0.522674	1E-11				Affymetrix, Illumina [24246363] (imputed)	N
722	chr17	18048607	18048608	rs854776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p11.2	NR	rs854776-C	0.615697	5E-12		0.01309	[0.0094-0.0168] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
722	chr17	18048607	18048608	rs854776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs854776-C	0.515193	2E-15				Affymetrix, Illumina [20825802] (imputed)	N
722	chr17	18050887	18050888	rs854775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p11.2		rs854775-T	NR	2E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
722	chr17	18050887	18050888	rs854775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17p11.2		rs854775-T	NR	3E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
722	chr17	18050887	18050888	rs854775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	MYO15A	rs854775-T	0.615417	1E-10		0.0138953	[0.0097-0.018] unit increase	Affymetrix [93095623] (imputed)	N
722	chr17	18050887	18050888	rs854775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p11.2	NR	rs854775-T	0.615035	4E-15		0.015558	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
722	chr17	18050887	18050888	rs854775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p11.2		rs854775-?	NR	6E-12				NR [~ 8900000] (imputed)	N
722	chr17	18054916	18054917	rs865923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p11.2		rs865923-C	NR	1E-11		0.0132	[0.0095-0.0169] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
722	chr17	18054916	18054917	rs865923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p11.2	MYO15A	rs865923-C	0.621927	1E-10		0.014595865	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr17	18054916	18054917	rs865923	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs865923-C	0.509815	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
722	chr17	18054916	18054917	rs865923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p11.2		rs865923-?	NR	1E-10				NR [~ 8900000] (imputed)	N
722	chr17	18054916	18054917	rs865923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs865923-?	NR	3E-25				NR [~ 8900000] (imputed)	N
722	chr17	18055228	18055229	rs854772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p11.2	MYO15A	rs854772-A	0.621543	3E-12		0.015858348	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
722	chr17	18055902	18055903	rs74361457	31295725	Wang ZT	2019-07-11	Aging (Albany NY)	Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders.	Change in neurofilament light levels	545 European ancestry individuals	NA	17p11.2	MYO15A	rs74361457-?		1E-6				Illumina [1231747]	N
722	chr17	18062442	18062443	rs854807	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	17p11.2	MYO15A	rs854807-A	0.426369	2E-8		0.061857767	[0.04-0.083] unit increase	Affymetrix [7260263] (imputed)	N
722	chr17	18062442	18062443	rs854807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17p11.2		rs854807-?	NR	5E-12				NR [~ 8900000] (imputed)	N
722	chr17	18063440	18063441	rs712273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p11.2	NR	rs712273-C	0.607497	5E-17		0.016116	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
722	chr17	18064729	18064730	rs8077577	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	MYO15A, ALKBH5	rs8077577-A	0.11	4E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
722	chr17	18070760	18070761	rs854796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p11.2		rs854796-A	0.6932	5E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
722	chr17	18070760	18070761	rs854796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p11.2	Intergenic	rs854796-A	0.6932	3E-8	(MTAG)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
722	chr17	18073937	18073938	rs712275	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17p11.2	MYO15A	rs712275-C	NR	8E-9		0.0170752	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
722	chr17	18079074	18079075	rs860568	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	17p11.2	MYO15A	rs860568-?	NR	8E-6				Illumina [1940243] (imputed)	N
722	chr17	18084089	18084089	rs574839719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17p11.2	NR	rs574839719-CA	NR	4E-9		0.0164	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
723	chr17	18091018	18091019	rs12600694	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17p11.2	NR	rs12600694-A	0.1998	4E-11		0.001871	[0.0013-0.0024] unit increase	Affymetrix [NR] (imputed)	N
723	chr17	18093756	18093757	rs11869205	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	ALKBH5	rs11869205-A	NR	1E-13		0.0212781	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
723	chr17	18099990	18099991	rs8071834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p11.2		rs8071834-C	NR	3E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
723	chr17	18117609	18117610	rs8069321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17p11.2		rs8069321-C	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
723	chr17	18123433	18123434	rs36058389	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	LLGL1	rs36058389-T	NR	1E-8		0.0204815	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
723	chr17	18125876	18125877	rs62072497	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p11.2	intergenic	rs62072497-A	0.1882	1E-9		0.0208	[0.014-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
723	chr17	18125876	18125877	rs62072497	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17p11.2	LLGL1	rs62072497-A	0.1881	3E-9		0.0202	[0.014-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
723	chr17	18126917	18126918	rs62072500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	LLGL1	rs62072500-C	NR	9E-9		0.0207117	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
723	chr17	18130143	18130144	rs2605134	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p11.2	NR	rs2605134-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
723	chr17	18130709	18130709	rs533075669	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p11.2	LLGL1	rs533075669-CT	0.7368	3E-9		0.0135	[0.009-0.018] unit increase	Affymetrix [18391927] (imputed)	N
723	chr17	18135400	18135401	rs2746027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17p11.2	NR	rs2746027-A	NR	3E-14		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
723	chr17	18135400	18135401	rs2746027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17p11.2	NR	rs2746027-A	NR	2E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
723	chr17	18144719	18144720	rs2245737	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs2245737-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
723	chr17	18151610	18151611	rs2746025	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17p11.2		rs2746025-C	0.66	6E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
723	chr17	18157159	18157160	rs68165736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17p11.2		rs68165736-?	NR	4E-11				NR [~ 8900000] (imputed)	N
723	chr17	18167396	18167397	rs3889402	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	17p11.2	NR	rs3889402-T	0.139776	3E-14		0.026	[0.019-0.033] unit increase	Affymetrix [23037915] (imputed)	N
723	chr17	18167504	18167505	rs2605143	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHMT1	5,368 Icelandic ancestry individuals	NA	17p11.2		rs2605143-T	0.2925	2E-49		0.306233	[0.27-0.35] unit decrease	Illumina [7506463] (imputed)	N
723	chr17	18171149	18171173	rs56311436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17p11.2		rs56311436-A	NR	4E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
723	chr17	18185509	18185510	rs4925159	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs4925159-A	0.4652	1E-12	(SHMT1)	0.5995	NR unit increase	Illumina [1671387] (imputed)	N
723	chr17	18185509	18185510	rs4925159	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17p11.2	TOP3A	rs4925159-A	0.4274	2E-20		0.2281	[0.18-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
723	chr17	18206385	18206386	rs75900542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17p11.2	NR	rs75900542-C	NR	4E-10		0.0456	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
723	chr17	18210809	18210810	rs4925166	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	17p11.2	SHMT1	rs4925166-?	NR	7E-12		1.1627907	[1.11-1.22]	Illumina [at least 8143088] (imputed)	N
723	chr17	18212613	18212614	rs8076336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17p11.2		rs8076336-T	NR	8E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
723	chr17	18212613	18212614	rs8076336	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	17p11.2	NR	rs8076336-?	NR	8E-6		0.033873	[0.019-0.049] unit increase	Affymetrix [9658292] (imputed)	N
723	chr17	18214315	18214315	rs772922996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	17p11.2		rs772922996-ATT	NR	3E-8		0.1026	[0.067-0.139] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
724	chr17	18220769	18220770	rs1563632	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs1563632-G	0.3136	4E-13	(SHMT1)	0.6169	NR unit decrease	Illumina [1671387] (imputed)	N
724	chr17	18221798	18221799	rs7221807	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p11.2	SMCR8	rs7221807-T	0.5569	5E-18		0.2274	[0.18-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
724	chr17	18227080	18227081	rs921986	31295725	Wang ZT	2019-07-11	Aging (Albany NY)	Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders.	Change in neurofilament light levels	545 European ancestry individuals	NA	17p11.2	SMCR8, MIEF2, SHMT1	rs921986-?		6E-6				Illumina [1231747]	N
724	chr17	18229451	18229452	rs12949119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17p11.2	NR	rs12949119-T	0.572337	6E-12		0.013126	[0.0094-0.0169] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
724	chr17	18229451	18229452	rs12949119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p11.2		rs12949119-?	NR	4E-9				NR [~ 8900000] (imputed)	N
724	chr17	18230379	18230380	rs941454	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17p11.2	SMCR8	rs941454-T	0.4931	7E-15		0.1569	[0.12-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
724	chr17	18233271	18233272	rs12451555	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17p11.2	NR	rs12451555-G	0.2445	2E-8		0.0169273	[0.011-0.023] unit decrease	Affymetrix [3505788] (imputed)	N
724	chr17	18244769	18244770	rs1975822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs1975822-C	0.569836	2E-10				Affymetrix, Illumina [22063850] (imputed)	N
724	chr17	18247361	18247362	rs7207306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17p11.2	SHMT1	rs7207306-T	NR	1E-12		0.0218973	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
724	chr17	18247361	18247362	rs7207306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17p11.2	SHMT1	rs7207306-T	NR	4E-13		0.0223587	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
724	chr17	18247361	18247362	rs7207306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17p11.2	SHMT1	rs7207306-T	NR	4E-10		0.0194603	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
724	chr17	18247361	18247362	rs7207306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17p11.2	NR	rs7207306-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
724	chr17	18247361	18247362	rs7207306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17p11.2	NR	rs7207306-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
724	chr17	18247361	18247362	rs7207306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17p11.2		rs7207306-?	NR	1E-14				NR [~ 8900000] (imputed)	N
724	chr17	18253838	18253839	rs62072546	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	17p11.2	SHMT1	rs62072546-?	NR	3E-8		0.0016	[0.001-0.0022] unit increase	Affymetrix [21347608] (imputed)	N
724	chr17	18253838	18253839	rs62072546	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	17p11.2	SHMT1	rs62072546-?	NR	7E-10		0.0029	[0.0019-0.0039] unit increase	Affymetrix [21347608] (imputed)	N
724	chr17	18263570	18263571	rs8067462	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHMT1	5,368 Icelandic ancestry individuals	NA	17p11.2		rs8067462-A	0.391	1E-63		0.324501	[0.29-0.36] unit increase	Illumina [7506463] (imputed)	N
724	chr17	18263570	18263571	rs8067462	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p11.2	SHMT1	rs8067462-C	0.60734375	1E-31	(SHMT1, 12334_25_3)	0.2998174	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
724	chr17	18290669	18290670	rs34769815	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs34769815-C	0.4024	6E-11	(SHMT1)	0.5421	NR unit decrease	Illumina [1671387] (imputed)	N
724	chr17	18311853	18311854	rs614973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17p11.2	RP1-37N7.3	rs614973-C	0.498106	1E-9		0.014524479	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
724	chr17	18322254	18322262	rs1478444121	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs1478444121-C	0.4268	2E-8	(SHMT1)	0.4522	NR unit decrease	Illumina [1671387] (imputed)	N
726	chr17	18487669	18487669	rs10688638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p11.2		rs10688638-GAAAT	NR	5E-16		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
728	chr17	18753869	18753870	rs4924935	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17p11.2	PRPSAP2	rs4924935-G	0.23	8E-6	(dominant)	1.37	[1.19-1.58]	Illumina [420236]	N
728	chr17	18766114	18766115	rs72842306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	PRPSAP2	rs72842306-C	0.519046	4E-13		0.01645581	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
728	chr17	18787827	18787828	rs9914544	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	17p11.2	NR	rs9914544-A	0.6192	5E-8		0.0126516605	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
728	chr17	18805886	18805887	rs7223173	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Motor composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	17p11.2	NR	rs7223173-?	NR	7E-6		0.99	[0.56-1.42] unit decrease	Illumina [552487]	N
728	chr17	18844735	18844736	rs1634423	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	17p11.2	NR	rs1634423-T	NR	5E-7		1.1965		Affymetrix [8183964] (imputed)	N
729	chr17	18912266	18912267	rs111527967	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	17p11.2		rs111527967-G	NR	2E-6	(GLM)	4.2893	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
729	chr17	18912266	18912267	rs111527967	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	17p11.2		rs111527967-G	NR	7E-6	(GLM)	12.4453	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
729	chr17	18923680	18923681	rs117355297	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	17p11.2	SLC5A10	rs117355297-T	0.04	2E-17	(EA)	8.52	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
729	chr17	18923817	18923818	rs1624825	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17p11.2		rs1624825-A	0.8001	8E-10		0.11541601	[0.076-0.155] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
731	chr17	19148304	19148305	rs4073003	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	17p11.2	NR	rs4073003-?		1E-9		0.0201634	[0.014-0.027] unit increase	Affymetrix [19400418] (imputed)	N
731	chr17	19153416	19153417	rs4273100	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p11.2	NR	rs4273100-T	NR	5E-7		1.1	[NR]	Illumina [7158791] (imputed)	N
731	chr17	19175244	19175245	rs76147626	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs76147626-T	0.01045	2E-8	(GCKR)	0.01504	NR unit increase	Illumina [1671387] (imputed)	N
731	chr17	19185210	19185211	rs868698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17p11.2		rs868698-?	NR	4E-10				NR [~ 8900000] (imputed)	N
731	chr17	19204431	19204432	rs12938803	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17p11.2	EPN2	rs12938803-T	0.802	6E-14		0.1482	[0.11-0.19] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
731	chr17	19217260	19217261	rs11652784	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17p11.2	EPN2	rs11652784-T	0.8044	2E-6		0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
731	chr17	19217260	19217261	rs11652784	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	17p11.2	EPN2	rs11652784-T	0.8044	1E-6		0.0398	[0.024-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
731	chr17	19217260	19217261	rs11652784	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	17p11.2	EPN2	rs11652784-T	0.8044	4E-7		0.0409	[0.025-0.057] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
731	chr17	19217260	19217261	rs11652784	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	17p11.2	EPN2	rs11652784-T	0.8044	7E-7		0.041	[0.025-0.057] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
731	chr17	19224396	19224397	rs6587216	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	17p11.2	EPN2	rs6587216-C		8E-9		5.495	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
731	chr17	19236953	19236954	rs12602286	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17p11.2	EPN2	rs12602286-?	NR	2E-8		0.01702477	[0.011-0.023] unit decrease	NR [7306098]	N
731	chr17	19236953	19236954	rs12602286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p11.2	Intergenic	rs12602286-T	0.8779	3E-12	(MTAG)	0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
731	chr17	19236953	19236954	rs12602286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p11.2		rs12602286-T	0.8731	5E-14		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
731	chr17	19236953	19236954	rs12602286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p11.2	Intergenic	rs12602286-T	0.8731	4E-14	(MTAG)	0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
731	chr17	19239431	19239432	rs1043809	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17p11.2		rs1043809-T	0.8114	1E-8		0.2034228	[0.13-0.27] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
731	chr17	19239431	19239432	rs1043809	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17p11.2		rs1043809-T	0.8115	1E-11		0.14171617	[0.1-0.18] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
731	chr17	19241364	19241365	rs72838804	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	17p11.2		rs72838804-C	NR	2E-7	(GLM)	4.3391	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
731	chr17	19241364	19241365	rs72838804	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	17p11.2		rs72838804-C	NR	2E-6	(GLM)	12.1314	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
731	chr17	19241364	19241365	rs72838804	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	17p11.2		rs72838804-C	NR	5E-7	(GLM)	0.7565	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
731	chr17	19247074	19247075	rs4924987	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p11.2		rs4924987-G	0.19	7E-10		6.16	z score increase	Affymetrix [9061022] (imputed)	N
731	chr17	19250678	19250679	rs7221299	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	17p11.2	NR	rs7221299-G	0.0964215	3E-8		0.06553906	[0.042-0.089] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
732	chr17	19286462	19286463	rs2233083	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	17p11.2	MAPK7	rs2233083-?	NR	1E-6		7.2292986		Affymetrix, Illumina [2928658] (imputed)	N
732	chr17	19289285	19289286	rs139356332	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	17p11.2	MFAP4	rs139356332-G	0.976675	8E-13		0.8994336	NR	Affymetrix [~ 9600000] (imputed)	N
732	chr17	19308767	19308768	rs76578497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs76578497-G	NR	5E-22		0.0861	[0.069-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr17	19308767	19308768	rs76578497	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs76578497-G	NR	2E-22		0.087	[0.07-0.104] unit increase	Affymetrix [9000000] (imputed)	N
733	chr17	19422724	19422725	rs4924997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17p11.2	SLC47A1	rs4924997-T	0.4593	6E-9		0.02151013	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
733	chr17	19423616	19423617	rs7405847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17p11.2	SLC47A1	rs7405847-C	0.460155	1E-15		0.01798542	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr17	19425039	19425040	rs4493120	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17p11.2		rs4493120-G	0.45377	8E-7		0.033116	[0.02-0.046] unit decrease	Affymetrix [15580782] (imputed)	N
733	chr17	19425039	19425040	rs4493120	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17p11.2		rs4493120-G	0.45377	7E-7		0.033694	[0.02-0.047] unit decrease	Affymetrix [15580782] (imputed)	N
733	chr17	19427600	19427601	rs55661368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs55661368-C	0.617097	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
733	chr17	19427842	19427843	rs35416333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17p11.2	SLC47A1	rs35416333-C	0.384915	4E-12		0.015854297	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
733	chr17	19427842	19427842	rs763362670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17p11.2	NR	rs763362670-D	0.385173	2E-19		0.01911	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
733	chr17	19428609	19428610	rs2440164	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	17p11.2	SLC47A1	rs2440164-G	0.3439	3E-21		9.48	NR z score decrease	Illumina [26237160] (imputed)	N
733	chr17	19428718	19428719	rs2440165	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17p11.2	SLC47A1	rs2440165-T	0.6364	1E-45		0.004	[0.0034-0.0046] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
733	chr17	19428718	19428719	rs2440165	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	17p11.2	SLC47A1	rs2440165-C	0.36	3E-7		1.0479983	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
733	chr17	19429789	19429790	rs8071709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p11.2		rs8071709-?	NR	4E-13				NR [~ 8900000] (imputed)	N
733	chr17	19430522	19430522	rs35814612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17p11.2		rs35814612-AT	NR	4E-12		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
733	chr17	19431158	19431158	rs5819674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17p11.2	SLC47A1	rs5819674-GA	0.382067	6E-11		0.015079971	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr17	19432392	19432393	rs11871125	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	17p11.2	SLC47A1	rs11871125-T	0.276	5E-11		0.226	[0.01-0.442] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
733	chr17	19434275	19434276	rs71861316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17p11.2	SLC47A1	rs71861316-G	0.34055	7E-12		0.016200569	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr17	19437186	19437187	rs2252281	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17p11.2	SLC47A1	rs2252281-T	0.635	5E-25		0.0039	[0.0033-0.0045] unit increase	Affymetrix [NR] (imputed)	N
733	chr17	19437186	19437187	rs2252281	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17p11.2	SLC47A1	rs2252281-T	0.6084	5E-40		0.0041	[0.0033-0.0049] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
733	chr17	19437279	19437280	rs555657341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	17p11.2		rs555657341-T	0.008996	9E-15		0.130163	[0.097-0.163] unit increase	Illumina [13478778] (imputed)	N
733	chr17	19438320	19438321	rs2453580	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17p11.2	SLC47A1	rs2453580-T	0.639	3E-10		0.0218	[0.015-0.029] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
733	chr17	19438320	19438321	rs2453580	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	17p11.2	SLC47A1	rs2453580-T	0.5977	7E-10		0.024703	[0.017-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
733	chr17	19438320	19438321	rs2453580	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	17p11.2	SLC47A1	rs2453580-T	NR	3E-13		0.0073	[0.0053-0.0093] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
733	chr17	19438320	19438321	rs2453580	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	17p11.2	SLC47A1	rs2453580-T	0.59	3E-11	(EA)	0.0064	[0.0046-0.0082] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
733	chr17	19440537	19440538	rs894680	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17p11.2	NR	rs894680-A	0.39	1E-8		0.0109	[0.0071-0.0147] unit decrease	NR [NR]	N
733	chr17	19440537	19440538	rs894680	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs894680-A	0.349333	3E-18				Affymetrix, Illumina [23472807] (imputed)	N
733	chr17	19440537	19440538	rs894680	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		17p11.2	SLC47A1	rs894680-A	NR	5E-12		0.0074	[0.0054-0.0094] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
733	chr17	19441530	19441531	rs2018675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs2018675-T	NR	3E-11		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
733	chr17	19441530	19441531	rs2018675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs2018675-T	NR	4E-12		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr17	19442035	19442036	rs2453583	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	17p11.2	SLC47A1	rs2453583-A	0.622	5E-14		0.402	[0.3-0.51] unit increase	Affymetrix [NR] (imputed)	N
733	chr17	19443444	19443445	rs2453584	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17p11.2	SLC47A1	rs2453584-C	0.3871	3E-28	(EA)	0.0041	[0.0033-0.0049] unit decrease	Affymetrix [NR] (imputed)	N
733	chr17	19444986	19444987	rs2440154	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	17p11.2	SLC47A1	rs2440154-A	0.13	1E-8		2.67	[1.9-3.75]	Affymetrix [508192]	N
733	chr17	19445922	19445923	rs12451696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs12451696-G	NR	2E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr17	19445922	19445923	rs12451696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs12451696-G	NR	5E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
733	chr17	19459204	19459205	rs141572615	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	17p11.2		rs141572615-?	NR	1E-22		0.221129	[0.17-0.27] unit increase	NR [9800000] (imputed)	N
733	chr17	19459204	19459205	rs141572615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs141572615-A	NR	2E-16		0.2298	[0.18-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
733	chr17	19459204	19459205	rs141572615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs141572615-A	NR	6E-17		0.2344	[0.18-0.29] unit increase	Affymetrix [9000000] (imputed)	N
733	chr17	19470501	19470502	rs147768037	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	17p11.2		rs147768037-?	NR	7E-11		0.267791	[0.19-0.35] unit increase	NR [9800000] (imputed)	N
733	chr17	19474874	19474875	rs111653425	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	17p11.2		rs111653425-C	0.98771	1E-18		0.142227	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
733	chr17	19474874	19474875	rs111653425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17p11.2		rs111653425-T	NR	2E-78		0.1648	[0.15-0.18] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
733	chr17	19474874	19474875	rs111653425	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	17p11.2	RP11-1113L8.1, SLC47A1	rs111653425-T	0.017013	1E-8		0.13484	[0.093-0.177] unit increase	Illumina [24961484] (imputed)	N
734	chr17	19537469	19537470	rs7225451	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17p11.2	NR	rs7225451-?	NR	3E-32				Affymetrix [NR]	N
734	chr17	19543433	19543434	rs201766101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p11.2		rs201766101-C	0.730798	3E-9		0.01518085	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
734	chr17	19584895	19584896	rs139110700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs139110700-T	NR	6E-12		0.2472	[0.18-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
734	chr17	19584895	19584896	rs139110700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17p11.2	NR	rs139110700-T	NR	4E-12		0.2503	[0.18-0.32] unit increase	Affymetrix [9000000] (imputed)	N
734	chr17	19603846	19603847	rs11655302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p11.2		rs11655302-?	NR	1E-8				NR [~ 8900000] (imputed)	N
734	chr17	19613602	19613603	rs12325921	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p11.2	NR	rs12325921-?	NR	5E-6		4.55	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
734	chr17	19617392	19617393	rs9900497	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	17p11.2		rs9900497-G	NR	4E-6	(GLM)	0.1968	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
734	chr17	19638152	19638153	rs2108967	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALDH3A1	5,364 Icelandic ancestry individuals	NA	17p11.2		rs2108967-A	0.3222	2E-23		0.196583	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
734	chr17	19638152	19638153	rs2108967	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17p11.2	ALDH3A1	rs2108967-G	0.685	1E-13	(ALDH3A1, 11480_1_3)	0.19320242	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
734	chr17	19642951	19642952	rs2228100	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p11.2	ALDH3A1	rs2228100-G	0.7719	9E-10		0.101	[0.068-0.134] unit decrease	Affymetrix [~ 11900000] (imputed)	N
734	chr17	19645937	19645938	rs887241	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17p11.2	ALDH3A1	rs887241-C	0.662	8E-21	(Aldehyde dehydrogenase, dimeric NADP-preferring, ALDH3A1.11480.1.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
734	chr17	19650040	19650041	rs12939864	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12939864-C	0.794369	2E-10		0.067203	[0.045-0.089] decrease	Affymetrix [11014269] (imputed)	N
734	chr17	19651118	19651119	rs75819168	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		17p11.2	ALDH3A1	rs75819168-C	0.984	9E-6		0.051	[0.029-0.073] dioptres decrease	NR [5900115] (imputed)	N
734	chr17	19651481	19651482	rs2072327	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17p11.2	ALDH3A1	rs2072327-T	0.7728	5E-10		0.103	[0.07-0.136] unit decrease	Affymetrix [~ 11900000] (imputed)	N
734	chr17	19651901	19651902	rs4646785	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	17p11.2	ALDH3A1, SLC47A2	rs4646785-T	NR	9E-12		0.197	[0.14-0.25] unit decrease	Affymetrix [7701190] (imputed)	N
736	chr17	19799697	19799698	rs166840	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17p11.2	NR	rs166840-A	0.4094	3E-12				NR [9056863] (imputed)	N
736	chr17	19799697	19799698	rs166840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17p11.2		rs166840-?	NR	2E-9				NR [~ 8900000] (imputed)	N
736	chr17	19799697	19799698	rs166840	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	17p11.2	AKAP10	rs166840-G	0.59	3E-11		1.03		Affymetrix [11800000] (imputed)	N
736	chr17	19800548	19800549	rs9899357	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17p11.2		rs9899357-C	0.38	3E-28		11.03	z score increase	Affymetrix [9061022] (imputed)	N
736	chr17	19804246	19804247	rs397969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17p11.2	RP11-78O7.2	rs397969-C	0.398521	9E-42		0.031006576	[0.027-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr17	19804246	19804247	rs397969	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	17p11.2	AKAP10	rs397969-C	NR	2E-9		2.131	[1.43-2.83] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
736	chr17	19806223	19806223	rs34384260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17p11.2	NR	rs34384260-CT	NR	4E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr17	19812540	19812541	rs203462	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17p11.2		rs203462-T	0.601	5E-13				Affymetrix [10369434] (imputed)	N
736	chr17	19812540	19812541	rs203462	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p11.2	AKAP10	rs203462-C		2E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
736	chr17	19820223	19820224	rs203456	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17p11.2	AKAP10, SPECC1	rs203456-?		1E-8				NR [7428630] (imputed)	N
736	chr17	19822479	19822480	rs203452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs203452-A	0.400804	4E-49				Affymetrix, Illumina [17210439] (imputed)	N
736	chr17	19823069	19823070	rs203450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs203450-T	0.356983	6E-28				Affymetrix, Illumina [24588908] (imputed)	N
736	chr17	19824272	19824273	rs57112968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17p11.2	AKAP10	rs57112968-C	0.397277	2E-18		0.020334572	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
736	chr17	19824272	19824273	rs57112968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17p11.2	AKAP10	rs57112968-C	0.397	5E-14		0.02810363	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
736	chr17	19827209	19827210	rs203482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17p11.2		rs203482-A	NR	4E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
736	chr17	19828727	19828728	rs203481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17p11.2	NR	rs203481-T	0.393816	3E-29		0.021008	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
736	chr17	19833150	19833151	rs203476	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 205)	19,670 European ancestry individuals	NA	17p11.2		rs203476-?	NR	5E-11				NR [9705931] (imputed)	N
736	chr17	19837678	19837679	rs860335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17p11.2		rs860335-G	NR	2E-9		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
736	chr17	19848593	19848594	rs1638525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17p11.2		rs1638525-C	NR	1E-22		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
736	chr17	19853094	19853095	rs35398779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17p11.2	AKAP10	rs35398779-G	0.3853	3E-11		0.02516109	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
736	chr17	19854938	19854939	rs185765	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17p11.2	NR	rs185765-G	0.395723	1E-10		0.012992	[0.009-0.0169] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
736	chr17	19857941	19857942	rs191865	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17p11.2	NR	rs191865-?	NR	6E-11	(left pallidum)			NR [9227495] (imputed)	N
736	chr17	19858625	19858626	rs203470	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17p11.2	AKAP10	rs203470-T	0.398117	2E-9		0.013553021	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
736	chr17	19861457	19861458	rs2108978	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals	up to 192,226 European ancestry individuals	17p11.2	AKAP10	rs2108978-C	0.6122	1E-7		0.0101	[0.0064-0.0138] unit increase	Illumina [246328]	N
736	chr17	19879163	19879164	rs7222403	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17p11.2		rs7222403-C	0.42	2E-19		9.01	z score increase	Affymetrix [9061022] (imputed)	N
736	chr17	19879163	19879164	rs7222403	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17p11.2	NR	rs7222403-C	0.427	1E-17				NR [9056863] (imputed)	N
736	chr17	19887722	19887723	rs78178505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs78178505-G	0.123403	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
736	chr17	19890236	19890237	rs9907752	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17p11.2		rs9907752-G	0.42	2E-15		7.93	z score increase	Affymetrix [9061022] (imputed)	N
736	chr17	19897562	19897563	rs146563863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p11.2		rs146563863-C	0.345978	6E-10		0.019826183	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
736	chr17	19897562	19897563	rs146563863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17p11.2	intergenic	rs146563863-C	0.3469	4E-11		0.02493103	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
736	chr17	19897562	19897563	rs146563863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17p11.2	intergenic	rs146563863-C	0.3468	7E-14		0.02823497	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
736	chr17	19897804	19897805	rs11204421	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17p11.2	NR	rs11204421-C	NR	4E-8		0.01322	[0.0085-0.0179] unit increase	Affymetrix [10847151] (imputed)	N
736	chr17	19912709	19912710	rs8067545	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17p11.2	NR	rs8067545-C	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
736	chr17	19914398	19914399	rs1860302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17p11.2	SPECC1	rs1860302-A	0.527018	6E-10		0.013694709	[0.0094-0.018] unit increase	Affymetrix [93095623] (imputed)	N
736	chr17	19914398	19914399	rs1860302	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs1860302-A	0.461805	7E-138				Affymetrix, Illumina [20825802] (imputed)	N
736	chr17	19914545	19914546	rs4925065	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17p11.2		rs4925065-T	0.5214	3E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
736	chr17	19918625	19918626	rs34848191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p11.2		rs34848191-T	NR	5E-68		0.0384	[0.034-0.043] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
736	chr17	19918625	19918626	rs34848191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17p11.2		rs34848191-T	NR	5E-71		0.0393	[0.035-0.044] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
736	chr17	19918625	19918626	rs34848191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs34848191-T	0.420789	3E-22				Affymetrix, Illumina [24332387] (imputed)	N
736	chr17	19918625	19918626	rs34848191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17p11.2	SPECC1	rs34848191-T	0.5211	6E-39		0.04630607	[0.039-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr17	19926835	19926836	rs7218708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p11.2	SPECC1	rs7218708-G	0.520753	5E-42		0.03585064	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	19926835	19926836	rs7218708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p11.2	NR	rs7218708-G	0.517505	3E-22		0.017986	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
737	chr17	19926835	19926836	rs7218708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs7218708-G	0.43746	5E-150				Affymetrix, Illumina [24246363] (imputed)	N
737	chr17	19926835	19926836	rs7218708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p11.2	NR	rs7218708-G	0.517543	5E-147		0.047017	[0.043-0.051] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
737	chr17	19926835	19926836	rs7218708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p11.2	NR	rs7218708-G	0.519357	3E-134		0.047539	[0.044-0.051] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
737	chr17	19926835	19926836	rs7218708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17p11.2	Intergenic	rs7218708-A	0.4889	2E-13	(MTAG)	0.0121	[0.009-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
737	chr17	19926835	19926836	rs7218708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17p11.2	Intergenic	rs7218708-A	0.486	5E-10	(MTAG)	0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
737	chr17	19926835	19926836	rs7218708	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17p11.2	SPECC1	rs7218708-G	0.5202	4E-37		0.04497505	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr17	19931581	19931583	rs34323625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17p11.2		rs34323625-A	NR	1E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
737	chr17	19931591	19931592	rs61257528	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	17p11.2	NR	rs61257528-?	NR	1E-8		1.07326	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
737	chr17	19934962	19934963	rs56142708	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17p11.2		rs56142708-A	0.478	3E-65		0.19	[-0.21--0.17] % decrease	Affymetrix [NR] (imputed)	N
737	chr17	19934962	19934963	rs56142708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p11.2	SPECC1	rs56142708-C	0.520799	5E-26		0.02356905	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19934962	19934963	rs56142708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17p11.2	SPECC1	rs56142708-C	0.520776	1E-33		0.027017243	[0.023-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19934962	19934963	rs56142708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p11.2	SPECC1	rs56142708-C	0.520738	6E-28		0.024413751	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19934962	19934963	rs56142708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p11.2	SPECC1	rs56142708-C	0.520731	1E-35		0.027802413	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19934962	19934963	rs56142708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17p11.2		rs56142708-?	NR	2E-8				NR [~ 8900000] (imputed)	N
737	chr17	19937408	19937409	rs34012755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17p11.2	SPECC1	rs34012755-C	0.4077	4E-13		0.02670509	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
737	chr17	19937408	19937409	rs34012755	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17p11.2	SPECC1	rs34012755-C	0.4076	2E-15		0.0292643	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
737	chr17	19937918	19937921	rs375147469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	SPECC1	rs375147469-C	0.521087	6E-43		0.049155	[0.045-0.053] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	19937918	19937921	rs375147469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p11.2	SPECC1	rs375147469-C	0.52103	8E-30		0.03459933	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	19941878	19941879	rs8065337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs8065337-A	0.46533	7E-13				Affymetrix, Illumina [24653286] (imputed)	N
737	chr17	19941878	19941879	rs8065337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17p11.2	NR	rs8065337-A	0.52655	1E-14		0.014247	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
737	chr17	19941878	19941879	rs8065337	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17p11.2	NR	rs8065337-?	NR	3E-9	(left pallidum)			NR [9227495] (imputed)	N
737	chr17	19942176	19942177	rs9891739	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17p11.2	NR	rs9891739-?	NR	3E-8	(right pallidum)			NR [9227495] (imputed)	N
737	chr17	19945818	19945819	rs3909258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p11.2		rs3909258-?	NR	6E-109				NR [~ 8900000] (imputed)	N
737	chr17	19946286	19946287	rs72843506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	SPECC1	rs72843506-A	0.210954	1E-12		0.019552743	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	19946286	19946287	rs72843506	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p11.2	SPECC1	rs72843506-A	NR	9E-7	(EA)	1.0683	[1.04-1.09]	Illumina [6627481] (imputed)	N
737	chr17	19946286	19946287	rs72843506	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17p11.2	SPECC1	rs72843506-A	NR	1E-8		1.073	[1.05-1.1]	Illumina [6627481] (imputed)	N
737	chr17	19946286	19946287	rs72843506	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	17p11.2	AKAP10, CCDC144CP, SPECC1, USP32P3	rs72843506-A	NR	4E-8		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
737	chr17	19962875	19962878	rs34148222	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17p11.2	SPECC1	rs34148222-ACTT		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
737	chr17	19963604	19963605	rs17759083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17p11.2	Intergenic	rs17759083-A	0.386	3E-14	(MTAG)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
737	chr17	19963604	19963605	rs17759083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17p11.2	Intergenic	rs17759083-T	0.614	1E-13		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
737	chr17	19965882	19965883	rs10083830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p11.2	SPECC1	rs10083830-A	0.383621	3E-15		0.017920615	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19965882	19965883	rs10083830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p11.2	SPECC1	rs10083830-A	0.383732	3E-18		0.020038286	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr17	19965882	19965883	rs10083830	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17p11.2	SPECC1	rs10083830-A	0.3846	8E-9		0.02098806	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
737	chr17	19965971	19965972	rs10083840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	SPECC1	rs10083840-G	0.385201	2E-59		0.037354495	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	20002163	20002164	rs918227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p11.2		rs918227-G	NR	1E-14		0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
737	chr17	20002163	20002164	rs918227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p11.2		rs918227-?	NR	3E-19				NR [~ 8900000] (imputed)	N
737	chr17	20003429	20003430	rs34370440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	SPECC1	rs34370440-G	0.436983	3E-9		0.0425561	[0.038-0.047] unit increase	Affymetrix [93095623] (imputed)	N
737	chr17	20008928	20008929	rs9901125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p11.2		rs9901125-G	NR	9E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
737	chr17	20019693	20019694	rs7222984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17p11.2		rs7222984-?	NR	1E-10				NR [~ 8900000] (imputed)	N
737	chr17	20019693	20019694	rs7222984	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17p11.2		rs7222984-?	NR	9E-11		0.0145773	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
737	chr17	20023098	20023099	rs2013441	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17p11.2	SPECC1	rs2013441-A	0.34	9E-6	(Urinary nitrogen )	0.03	[NR] g/d increase	Illumina [899892]	N
737	chr17	20027137	20027138	rs55705283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17p11.2		rs55705283-A	NR	6E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
738	chr17	20107772	20107773	rs2703805	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17p11.2		rs2703805-T	0.6044	5E-8		0.11923377	[0.075-0.164] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
738	chr17	20114435	20114436	rs574341066	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17p11.2	NR	rs574341066-?	NR	3E-6		4.649	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
738	chr17	20135671	20135672	rs35835131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	SPECC1	rs35835131-A	0.025008	2E-9		0.043426786	[0.029-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr17	20164107	20164108	rs74850712	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	17p11.2	NR	rs74850712-G	0.99	1E-6		1.87	[NR]	Affymetrix [87696888] (imputed)	N
738	chr17	20176777	20176778	rs10708984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p11.2	AC004702.2, SPECC1	rs10708984-C	0.533424	8E-10		0.01629217	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
739	chr17	20236431	20236432	rs12450807	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17p11.2	NR	rs12450807-?	NR	4E-8	(right pallidum)			NR [9227495] (imputed)	N
744	chr17	20907311	20907312	rs115512666	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs115512666-A	0.01742	1E-8	(ALDH6A1)	2.226	NR unit increase	Illumina [1671387] (imputed)	N
744	chr17	20923146	20923147	rs11654801	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	17p11.2	USP22	rs11654801-T	NR	4E-6		0.0286495	[0.016-0.041] unit decrease	Illumina [13520550] (imputed)	N
744	chr17	20924076	20924077	rs7226229	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	17p11.2	MGC87631, DHRS7B	rs7226229-?	NR	1E-6		0.117	[0.070-0.164] unit increase	Illumina [> 2500000] (imputed)	N
744	chr17	20941992	20941993	rs184647441	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs184647441-G	0.02091	1E-10	(ALDH6A1)	2.32	NR unit increase	Illumina [1671387] (imputed)	N
744	chr17	20969666	20969666	rs1218155646	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs1218155646-T	0.01568	3E-8	(ALDH6A1)	2.306	NR unit increase	Illumina [1671387] (imputed)	N
745	chr17	21006461	21006462	rs8065764	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		17p11.2	NR	rs8065764-C	0.877	1E-6		1.56	[1.30-1.87]	Illumina [~ 8000000] (imputed)	N
745	chr17	21072362	21072363	rs899333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17p11.2	NR	rs899333-A	0.510181	3E-10		0.011769	[0.0081-0.0154] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
745	chr17	21073288	21073289	rs118084662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	17p11.2	HDAC9	rs118084662-?	NR	5E-6	(Hispanic/Latino)	0.3050762	[0.17-0.44] unit increase	Illumina [29713514] (imputed)	N
745	chr17	21073288	21073289	rs118084662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	17p11.2	HDAC9	rs118084662-?	NR	2E-8		0.3423223	[0.22-0.46] unit increase	Illumina [29713514] (imputed)	N
745	chr17	21081319	21081320	rs2279164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17p11.2		rs2279164-G	NR	1E-9		0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
745	chr17	21099744	21099745	rs735092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs735092-?	NR	1E-8				NR [~ 8900000] (imputed)	N
745	chr17	21099744	21099745	rs735092	24342994	Lencz T	2014-02-01	Mol Psychiatry	Molecular genetic evidence for overlap between general cognitive ability and risk for schizophrenia: a report from the Cognitive Genomics consorTium (COGENT).	General cognitive ability	4,896 European ancestry individuals	NR	17p11.2	NR	rs735092-?	NR	1E-6		0.0945	unit increase	Affymetrix, Illumina [up to 1078289] (imputed)	N
746	chr17	21104816	21104817	rs1109513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17p11.2		rs1109513-A	NR	3E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
746	chr17	21104816	21104817	rs1109513	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17p11.2	NR	rs1109513-A	0.51	2E-8		0.0102	[0.0066-0.0138] unit increase	NR [NR]	N
746	chr17	21114153	21114154	rs11871152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17p11.2		rs11871152-G	NR	5E-9		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
746	chr17	21138333	21138334	rs11204344	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p11.2	TMEM11	rs11204344-?	NR	7E-6	(5-hydroxyindoleacetic acid)	0.17894201	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
746	chr17	21142571	21142572	rs6902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p11.2	NR	rs6902-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
746	chr17	21154653	21154654	rs12951372	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs12951372-?	NR	7E-9				NR [~ 8900000] (imputed)	N
746	chr17	21155683	21155684	rs4985996	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p11.2	NR	rs4985996-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
746	chr17	21156859	21156860	rs8067342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17p11.2	C17orf103	rs8067342-T	0.31785	4E-23		0.023522804	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr17	21156859	21156860	rs8067342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p11.2	C17orf103	rs8067342-T	0.317643	2E-43		0.03354099	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr17	21156859	21156860	rs8067342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs8067342-C	0.691141	6E-27				Affymetrix, Illumina [22063850] (imputed)	N
746	chr17	21156859	21156860	rs8067342	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17p11.2	NR	rs8067342-C	0.685085	9E-30		0.02318	[0.019-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
746	chr17	21156859	21156860	rs8067342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17p11.2		rs8067342-?	NR	2E-33				NR [~ 8900000] (imputed)	N
746	chr17	21156859	21156860	rs8067342	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17p11.2	NR	rs8067342-T	NR	4E-8		0.0221496	[0.014-0.03] unit decrease	Affymetrix [16832071] (imputed)	N
746	chr17	21156859	21156860	rs8067342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17p11.2	C17orf103	rs8067342-T	0.3173	8E-9		0.02190231	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
746	chr17	21156859	21156860	rs8067342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17p11.2	C17orf103	rs8067342-T	0.3173	8E-18		0.03275845	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
746	chr17	21157125	21157126	rs9898636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17p11.2		rs9898636-G	NR	4E-13		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
746	chr17	21162266	21162267	rs12952576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p11.2	RP11-64J19.1	rs12952576-A	NR	4E-9		0.0193368	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
746	chr17	21164977	21164978	rs12937755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p11.2	RP11-64J19.1	rs12937755-T	0.302122	6E-9		0.014337233	[0.0095-0.0192] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr17	21165214	21165215	rs7225703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17p11.2		rs7225703-?	NR	4E-14				NR [~ 8900000] (imputed)	N
746	chr17	21166970	21166971	rs9904699	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17p11.2		rs9904699-A	NR	1E-10		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
746	chr17	21166970	21166971	rs9904699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17p11.2	RP11-64J19.1	rs9904699-A	0.364698	1E-17		0.019905994	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr17	21167269	21167269	rs572954335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17p11.2	RP11-64J19.1	rs572954335-CA	0.309131	3E-16		0.020921625	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr17	21186359	21186360	rs10468608	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		17p11.2	NR	rs10468608-C	0.627944	5E-6		1.126126	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
746	chr17	21206439	21206440	rs3744222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17p11.2		rs3744222-T	NR	7E-21		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
746	chr17	21215203	21215204	rs9909362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17p11.2		rs9909362-T	NR	2E-8		0.0604	[0.039-0.082] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
747	chr17	21241853	21241854	rs1809237	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	17p11.2		rs1809237-T	0.548867	6E-10		0.0254505	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
747	chr17	21244606	21244607	rs3853548	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	17p11.2	MAP2K3	rs3853548-A	0.487263	4E-8		0.0117861	[0.0076-0.016] unit decrease	NR [16516521] (imputed)	N
747	chr17	21251092	21251092	rs55678940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17p11.2		rs55678940-CTGTAAAGAAA	NR	2E-19		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
747	chr17	21257950	21257951	rs4986041	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p11.2	KCNJ12	rs4986041-C	NR	4E-9		0.0180697	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
747	chr17	21261559	21261560	rs4986044	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17p11.2	NR	rs4986044-C	NR	3E-8		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
747	chr17	21261559	21261560	rs4986044	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17p11.2	MAP2K3, KCNJ12	rs4986044-T	0.49	2E-10		0.015	[0.011-0.019] unit decrease	Illumina [6108953] (imputed)	N
747	chr17	21261559	21261560	rs4986044	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17p11.2	KCNJ18, C17orf51, MAP2K3, C17orf103, TMEM11, DHRS7B, USP22, CCDC144NL	rs4986044-T	0.469023285324691	5E-10		0.017252877	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
747	chr17	21261559	21261560	rs4986044	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p11.2	KCNJ12	rs4986044-C	0.531	1E-7	(EA)	0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
747	chr17	21261559	21261560	rs4986044	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17p11.2	KCNJ12	rs4986044-C	0.523	2E-7		0.016	[0.0096-0.0214] kg/m2 increase	Affymetrix, Illumina [2550021]	N
747	chr17	21263692	21263693	rs4986045	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17p11.2	NA	rs4986045-C	0.4594	9E-25		0.0178	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
747	chr17	21264395	21264396	rs1320251	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17p11.2	KCNJ12	rs1320251-C	0.545301	3E-19		0.0123928	[0.0097-0.0151] unit increase	Affymetrix [12370749]	N
747	chr17	21264395	21264396	rs1320251	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p11.2	NR	rs1320251-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
747	chr17	21264395	21264396	rs1320251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17p11.2		rs1320251-?	NR	6E-21				NR [~ 8900000] (imputed)	N
747	chr17	21264395	21264396	rs1320251	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17p11.2	NA	rs1320251-T	0.4566	6E-25		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
747	chr17	21264395	21264396	rs1320251	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17p11.2	NA	rs1320251-T	0.4566	6E-25		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
747	chr17	21270855	21270856	rs117425313	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17p11.2	NR	rs117425313-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
747	chr17	21279288	21279289	rs7213608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17p11.2		rs7213608-C	0.33	5E-10				NR [NR] (imputed)	N
747	chr17	21279288	21279289	rs7213608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17p11.2		rs7213608-C	0.33	4E-16		0.013	% increase	NR [NR] (imputed)	N
747	chr17	21279288	21279289	rs7213608	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17p11.2	KCNJ12	rs7213608-T	0.675	1E-38		0.0265	[0.023-0.03] unit increase	Affymetrix [18391927] (imputed)	N
747	chr17	21279288	21279289	rs7213608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs7213608-?	NR	1E-69				NR [~ 8900000] (imputed)	N
747	chr17	21279288	21279289	rs7213608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17p11.2	NA	rs7213608-T	0.6826	7E-19		0.0171	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
747	chr17	21279288	21279289	rs7213608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17p11.2	NR	rs7213608-T	0.6826	7E-19		0.0171	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
747	chr17	21279485	21279486	rs71373621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17p11.2	KCNJ12	rs71373621-A	0.6276	6E-18		0.020282716	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21279485	21279486	rs71373621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs71373621-A	0.637978	7E-16				Affymetrix, Illumina [20825802] (imputed)	N
747	chr17	21279485	21279486	rs71373621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17p11.2	NR	rs71373621-A	0.627316	5E-19		0.018976	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
747	chr17	21280069	21280070	rs66628279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17p11.2		rs66628279-G	NR	4E-12		0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
747	chr17	21280113	21280113	rs78879665	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17p11.2	KCNJ12	rs78879665-AG	0.625511	1E-10		0.015047034	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21280113	21280113	rs78879665	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17p11.2	KCNJ12	rs78879665-AG	0.625572	2E-13		0.017117115	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
747	chr17	21280113	21280113	rs78879665	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17p11.2	KCNJ12	rs78879665-AG	0.625533	2E-21		0.0205282	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21280534	21280535	rs9896673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17p11.2	KCNJ12	rs9896673-C	NR	2E-11		0.0215065	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
747	chr17	21280534	21280535	rs9896673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs9896673-G	0.63515	3E-21				Affymetrix, Illumina [24246363] (imputed)	N
747	chr17	21280534	21280535	rs9896673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17p11.2	NR	rs9896673-G	0.62635	2E-23		0.019868	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
747	chr17	21280641	21280642	rs9895199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17p11.2	KCNJ12	rs9895199-G	NR	3E-9		0.0174695	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
747	chr17	21280641	21280642	rs9895199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17p11.2	NR	rs9895199-A	0.636715	6E-15				Affymetrix, Illumina [24332387] (imputed)	N
747	chr17	21280641	21280642	rs9895199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17p11.2	NR	rs9895199-A	0.62771	5E-17		0.016954	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
747	chr17	21280641	21280642	rs9895199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17p11.2		rs9895199-?	NR	2E-12				NR [~ 8900000] (imputed)	N
747	chr17	21281465	21281466	rs7215815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17p11.2	KCNJ12	rs7215815-G	0.626708	1E-11		0.015923824	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21281465	21281466	rs7215815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17p11.2	KCNJ12	rs7215815-G	0.626726	9E-17		0.019315124	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21281465	21281466	rs7215815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17p11.2	KCNJ12	rs7215815-G	0.626721	1E-9		0.014374492	[0.0098-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr17	21281662	21281663	rs7216121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17p11.2		rs7216121-G	NR	2E-51		0.0203	[0.018-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
747	chr17	21283506	21283507	rs1317349	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17p11.2	KCNJ12	rs1317349-?	NR	2E-12		0.021266991	[0.015-0.027] unit increase	Illumina [27896057] (imputed)	N
747	chr17	21284222	21284223	rs4640244	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	KCNJ12	rs4640244-A	0.6038	3E-8	(EA)	0.0207	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
747	chr17	21284222	21284223	rs4640244	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17p11.2	KCNJ12	rs4640244-A	0.6038	1E-6	(EA, women)	0.0245	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
747	chr17	21284222	21284223	rs4640244	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17p11.2	KCNJ12	rs4640244-A	0.61	2E-8		0.024	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
747	chr17	21284672	21284673	rs4488509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17p11.2		rs4488509-A	0.348354	6E-14		0.0161076	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
747	chr17	21284909	21284910	rs117642733	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17p11.2	NR	rs117642733-C	0.9584	9E-9		0.0762	[0.05-0.102] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
748	chr17	21420307	21420308	rs117247990	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17p11.2	NR	rs117247990-T	0.04355	2E-8	(PYCARD)	0.01055	NR unit increase	Illumina [1671387] (imputed)	N
749	chr17	21556435	21556436	rs9747768	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17p11.2	FAM27L	rs9747768-?	NR	7E-6	(TAG 54:5)	0.2315566	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
750	chr17	21707059	21707060	rs1975974	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	17p11.2	NR	rs1975974-G	0.23	1E-7		1.17	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
750	chr17	21715698	21715699	rs139221627	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	17p11.2	C17orf51	rs139221627-T	0.07	1E-7		4.68	[2.51-8.73]	Affymetrix [583535] (imputed)	N
750	chr17	21717542	21717543	rs17052344	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	17p11.2	FAM27L	rs17052344-A	0.2261	4E-7		1.18	NR	Illumina [11532644] (imputed)	N
751	chr17	21764679	21764680	rs72842083	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17p11.2	UBBP4	rs72842083-C	0.0295741472969685	4E-6	(G_Coprococcus_HB)	0.983617	[0.56-1.4] unit decrease	Illumina [7711310] (imputed)	N
751	chr17	21847482	21847483	rs534291129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17p11.2		rs534291129-?	NR	2E-9				NR [~ 8900000] (imputed)	N
752	chr17	21909649	21909650	rs2019216	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	17p11.2	FLJ36000	rs2019216-C	0.36	7E-6		1.2987013		Affymetrix [at least 730985] (imputed)	N
753	chr17	22020567	22020568	rs201766885	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	17p11.2	NR	rs201766885-C	0.0464	4E-6		113.0	[65-161] unit increase	NR [9714326] (imputed)	N
778	chr17	25320888	25320889	rs73317122	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	17q11.1	intergenic	rs73317122-?	NR	4E-6	(SF8)			Affymetrix [5476100] (imputed)	N
779	chr17	25541277	25541278	rs4795519	21540461	Kim DH	2011-05-03	Blood	A genome-wide association study identifies novel loci associated with susceptibility to chronic myeloid leukemia.	Chronic myeloid leukemia	201 Korean ancestry cases, 497 Korean ancestry controls	237 Korean ancestry cases, 1,000 Korean ancestry controls, 232 European ancestry cases, 576 European ancestry controls	17q11.1	WSB1, FAM27L	rs4795519-C	0.48	1E-12		1.85	[1.56-2.17]	Affymetrix [456522]	N
780	chr17	25563429	25563430	rs62057205	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q11.1	NR	rs62057205-?		7E-6				Illumina [4322238] (imputed)	N
780	chr17	25567079	25567080	rs12602978	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	17q11.1	WSB1	rs12602978-?	NR	7E-7	(DMFS5mand)			Illumina [518997]	N
780	chr17	25575975	25575976	rs931688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.1		rs931688-?	NR	6E-11				NR [~ 8900000] (imputed)	N
780	chr17	25591428	25591429	rs904538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	17q11.1		rs904538-C	0.537406	6E-11		0.0270655	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
780	chr17	25606023	25606024	rs9902474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q11.1		rs9902474-A	NR	1E-14		0.0107	[0.008-0.0134] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
780	chr17	25615546	25615547	rs11650725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q11.1		rs11650725-C	0.246447	5E-10		0.0148536	[0.01-0.02] unit increase	Illumina [13479295] (imputed)	N
780	chr17	25615546	25615547	rs11650725	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q11.1	NONE, MIR4522	rs11650725-?	NR	2E-8		0.01909605	[0.012-0.026] unit increase	Illumina [27896057] (imputed)	N
780	chr17	25652274	25652275	rs9909342	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q11.1	WSB1	rs9909342-A	0.381476	2E-11		0.017867	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
781	chr17	25749546	25749547	rs112437747	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactococcus lactis abundance in stool	5,959 Finnish ancestry individuals	NA	17q11.2		rs112437747-T	0.0105936	2E-8		0.277633	[0.18-0.38] unit increase	Illumina [7980478] (imputed)	N
781	chr17	25799460	25799461	rs115738100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q11.2		rs115738100-?	NR	2E-8				NR [~ 8900000] (imputed)	N
782	chr17	25843642	25843643	rs2945412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs2945412-A	0.544079	3E-26				Affymetrix, Illumina [23467995] (imputed)	N
782	chr17	25843642	25843643	rs2945412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q11.2	NR	rs2945412-A	0.586022	1E-25		0.019924	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
782	chr17	25843642	25843643	rs2945412	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q11.2	NR	rs2945412-A	0.59	3E-8	(EA)	1.0579644		Affymetrix, Illumina [~ 9000000] (imputed)	N
782	chr17	25843642	25843643	rs2945412	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q11.2	NR	rs2945412-A	0.59	5E-20	(EA)	1.1196703	[1.1-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
782	chr17	25843642	25843643	rs2945412	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	17q11.2	LGALS9, NOS2	rs2945412-A	0.587	9E-17		1.137	[1.10-1.175]	Affymetrix, Illumina [1230000] (imputed)	N
782	chr17	25848195	25848196	rs1105527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q11.2		rs1105527-T	NR	2E-19		0.0192	[0.015-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
782	chr17	25848195	25848196	rs1105527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q11.2	KSR1	rs1105527-T	0.586846	1E-15		0.0180575	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr17	25848195	25848196	rs1105527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q11.2	KSR1	rs1105527-T	0.5876	5E-11		0.02368987	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
782	chr17	25848195	25848196	rs1105527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q11.2	KSR1	rs1105527-T	0.5876	2E-10		0.02303371	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
782	chr17	25856485	25856486	rs2948542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q11.2	KSR1	rs2948542-A	0.413085	1E-20		0.020983689	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr17	25869032	25869033	rs10775412	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q11.2	KSR1	rs10775412-?		3E-8				Illumina [9560910] (imputed)	N
782	chr17	25869032	25869033	rs10775412	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q11.2	KSR1	rs10775412-?	NR	3E-19	(subset analysis)			Illumina [130052]	N
782	chr17	25893226	25893227	rs2945400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs2945400-?	NR	6E-12				NR [~ 8900000] (imputed)	N
782	chr17	25922544	25922545	rs4795774	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	17q11.2	KSR1	rs4795774-?	NR	5E-6	(Hispanic)	1.3513513	[1.19-1.54]	Illumina [at least 5000000] (imputed)	N
782	chr17	25923169	25923170	rs2140225	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q11.2	NR	rs2140225-?		1E-6	(GC)	0.2611	[NR] unit decrease	Illumina [NR]	N
783	chr17	25971794	25971795	rs62055780	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	LGALS9	rs62055780-T	0.75296875	8E-12	(LGALS9, 9197_4_3)	0.20303887	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
783	chr17	25974257	25974258	rs4239242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS9	5,359 Icelandic ancestry individuals	NA	17q11.2		rs4239242-C	0.362	5E-20		0.176272	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
783	chr17	25974600	25974600	rs113216780	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	LGALS9	rs113216780-AATTATT	0.246	2E-13	(Galectin-9, LGALS9.9197.4.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
783	chr17	26021489	26021490	rs572011593	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q11.2	Intergenic	rs572011593-?		4E-6		2.89	[1.84-4.55]	Illumina [7645193] (imputed)	N
784	chr17	26084985	26084986	rs8080418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q11.2	NR	rs8080418-T	0.269331	2E-10		0.014253	[0.0098-0.0187] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
784	chr17	26089264	26089265	rs9895831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q11.2		rs9895831-?	NR	7E-8				NR [~ 8900000] (imputed)	N
784	chr17	26092036	26092037	rs944722	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	NOS2	rs944722-C	0.4	3E-7	(EA)	0.075	[0.046-0.104] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
784	chr17	26092036	26092037	rs944722	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	NOS2	rs944722-C	0.38	1E-9		0.073	[0.049-0.097] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
784	chr17	26096596	26096597	rs2297518	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	17q11.2	NOS2	rs2297518-A	0.19	6E-7	(conditioned on rs2531875, EA)	1.13		Illumina [128935]	N
784	chr17	26097130	26097131	rs9797244	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q11.2	NOS2	rs9797244-?	NR	1E-10	(subset analysis)			Illumina [130052]	N
784	chr17	26098780	26098781	rs7217335	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	17q11.2	NOS2	rs7217335-A	NR	1E-6		1.34	[1.15-1.56]	Illumina [up to 294091]	N
784	chr17	26099170	26099171	rs2274894	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	17q11.2	NOS2	rs2274894-?	NR	8E-7		1.2048193	[1.11-1.28]	Illumina [7436415] (imputed)	N
784	chr17	26106674	26106675	rs4795067	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	17q11.2	NOS2	rs4795067-G	NR	4E-6		1.176	NR	Illumina [11532644] (imputed)	N
784	chr17	26106674	26106675	rs4795067	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Cutaneous psoriasis	1,363 European ancestry cases, 4,934 European ancestry controls	up to 2,969 European ancestry cases, up to European ancestry 14,384 controls	17q11.2	NOS2	rs4795067-G	NR	8E-6		1.165	NR	Illumina [11532644] (imputed)	N
784	chr17	26106674	26106675	rs4795067	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	17q11.2	NOS2	rs4795067-G	0.351	6E-10		1.2	[1.13-1.27]	Illumina [up to 4778154] (imputed)	N
784	chr17	26106674	26106675	rs4795067	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	17q11.2	NOS2	rs4795067-G	0.351	3E-6	(EA)	1.17	[1.1-1.25]	Illumina [up to 4778154] (imputed)	N
784	chr17	26106674	26106675	rs4795067	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	17q11.2	NOS2	rs4795067-?	NR	6E-12	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
784	chr17	26106674	26106675	rs4795067	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	17q11.2	NOS2	rs4795067-G	0.35	4E-11		1.19	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
784	chr17	26124907	26124908	rs28998802	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs28998802-A		8E-14		1.11		NR [8016731] (imputed)	N
784	chr17	26124907	26124908	rs28998802	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs28998802-A	NR	1E-14		1.12	NR	NR [8016731] (imputed)	N
784	chr17	26124907	26124908	rs28998802	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA		NOS2	rs28998802-?	NR	7E-12	(subset analysis)			Illumina [130052]	N
784	chr17	26124907	26124908	rs28998802	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls		NOS2	rs28998802-A	0.143	3E-13		1.255	NR	Illumina [up to 11532644] (imputed)	N
784	chr17	26124907	26124908	rs28998802	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA		NOS2	rs28998802-A	0.145	3E-16		1.22		Illumina [111236] (imputed)	N
784	chr17	26127517	26127518	rs10459953	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	17q11.2	NR	rs10459953-?	NR	2E-6		4.73	[NR] z-score decrease	Illumina [1387382] (imputed)	N
784	chr17	26137539	26137540	rs2779255	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q11.2	RP1-66C13.4	rs2779255-?	NR	1E-7	(subset analysis)			Illumina [130052]	N
784	chr17	26144738	26144739	rs1014025	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	17q11.2		rs1014025-T	NR	1E-6		0.96416		Affymetrix, Illumina [62056310] (imputed)	N
784	chr17	26145378	26145379	rs2531870	34782693	Yamada M	2021-11-15	Commun Biol	Genetic loci for lung function in Japanese adults with adjustment for exhaled nitric oxide levels as airway inflammation indicator.	Exhaled nitric oxide levels	14,061 Japanese ancestry individuals	5,661 Japanese ancestry individuals	17q11.2		rs2531870-C	0.7281	1E-29		0.1437	[0.12-0.17] unit increase	Affymetrix [8587571] (imputed)	N
784	chr17	26148166	26148167	rs2531875	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	17q11.2	NOS2	rs2531875-G	0.367	1E-8	(EA)	1.12		Illumina [128935]	N
784	chr17	26148166	26148167	rs2531875	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	17q11.2	NOS2	rs2531875-G	0.367	1E-10		1.12		Illumina [128935]	N
784	chr17	26176832	26176833	rs72841279	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	17q11.2	NR	rs72841279-T	0.05598	5E-9		1.696	[0.9-2.49] unit decrease	Illumina [at least 567677] (imputed)	N
784	chr17	26206413	26206414	rs3751972	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	LYRM9	rs3751972-C	0.26	7E-9	(EA)	0.095	[0.064-0.126] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
784	chr17	26206413	26206414	rs3751972	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q11.2	LYRM9	rs3751972-C	0.25	2E-10		0.086	[0.059-0.113] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
785	chr17	26242560	26242560	rs376042137	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q11.2		rs376042137-C	0.00875	2E-8		0.9691	[0.63-1.31] unit decrease	Illumina [18335935] (imputed)	N
785	chr17	26242755	26242756	rs9630740	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q11.2	LGALS9	rs9630740-C	0.261665	9E-9		5.76	z score increase	NR [~ 10847151] (imputed)	N
785	chr17	26280203	26280204	rs1548714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	17q11.2		rs1548714-?	NR	6E-9				NR [~ 8900000] (imputed)	N
785	chr17	26309965	26309966	rs4239212	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	17q11.2		rs4239212-A	0.0792419	4E-7		0.0253061	[0.015-0.035] unit decrease	Illumina [13900000] (imputed)	N
785	chr17	26318586	26318587	rs4795195	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q11.2	NA	rs4795195-A	0.2872	3E-9		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
785	chr17	26337891	26337892	rs11652527	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q11.2	NR	rs11652527-?	NR	1E-31				Affymetrix [NR]	N
786	chr17	26385919	26385920	rs148241051	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	17q11.2		rs148241051-A	NR	1E-5		5.4292	[3.07-7.78] unit decrease	Illumina [NR] (imputed)	N
786	chr17	26437053	26437054	rs183124483	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	17q11.2	NLK	rs183124483-?		6E-7		14.925372	[6.85-32.26]	Illumina [~ 12000000] (imputed)	N
787	chr17	26531352	26531353	rs74577258	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs74577258-C	0.01568	3E-10	(LTF)	0.3742	NR unit increase	Illumina [1671387] (imputed)	N
787	chr17	26592945	26592946	rs241771	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VEGFA	5,366 Icelandic ancestry individuals	NA	17q11.2		rs241771-T	0.4502	3E-13		0.138271	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
787	chr17	26592945	26592946	rs241771	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	17q11.2	intergenic	rs241771-T	0.45	3E-11		0.15	unit decrease	Illumina [5270624] (imputed)	N
787	chr17	26601132	26601133	rs2006933	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	17q11.2	intergenic	rs2006933-?	0.25	9E-7	(Meta)	1.2658	[1.16-1.37]	Illumina [254145]	N
788	chr17	26610251	26610252	rs34517613	24256812	Fogh I	2013-11-20	Hum Mol Genet	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	17q11.2	SALM1	rs34517613-T	NR	9E-9		1.2	[1.12-1.29]	Illumina [~ 7000000] (imputed)	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	9E-9	(EA, Serine/threonine-protein kinase 17B)	0.2523	[0.17-0.34] unit increase	Affymetrix [509946]	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	9E-12	(EA, Macrophage scavenger receptor types I and II)	0.3044	[0.22-0.39] unit increase	Affymetrix [509946]	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	6E-9	(EA, Non-receptor tyrosine-protein kinase TYK2)	0.255	[0.17-0.34] unit increase	Affymetrix [509946]	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	3E-13	(EA, OCIA domain-containing protein 1)	0.3225	[0.24-0.41] unit increase	Affymetrix [509946]	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	2E-10	(EA, Abelson tyrosine-protein kinase 2)	0.2762	[0.19-0.36] unit increase	Affymetrix [509946]	N
788	chr17	26610512	26610513	rs9901901	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	KRT18P55	rs9901901-C	0.4773869	1E-13	(EA, Breast cancer anti-estrogen resistance protein 3)	0.3202	[0.24-0.4] unit increase	Affymetrix [509946]	N
788	chr17	26612995	26612996	rs614877	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK13	5,349 Icelandic ancestry individuals	NA	17q11.2		rs614877-T	0.4588	4E-13		0.126721	[0.093-0.161] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26612995	26612996	rs614877	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTR7	5,366 Icelandic ancestry individuals	NA	17q11.2		rs614877-T	0.4588	3E-12		0.130101	[0.094-0.167] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26628746	26628747	rs241780	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPIL2	5,344 Icelandic ancestry individuals	NA	17q11.2		rs241780-A	0.392	8E-13		0.125105	[0.091-0.159] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26629051	26629052	rs144055451	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	17q11.2		rs144055451-?	NR	2E-6	(serous_hg)	1.91		Illumina [11595112] (imputed)	N
788	chr17	26633615	26633616	rs241777	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q11.2		rs241777-C	0.514776	2E-9		0.0244358	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
788	chr17	26633615	26633616	rs241777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNIP1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs241777-T	0.4605	3E-12		0.125176	[0.09-0.16] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26633615	26633616	rs241777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT11	5,344 Icelandic ancestry individuals	NA	17q11.2		rs241777-T	0.4605	3E-13		0.125183	[0.092-0.159] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26638620	26638620	rs34379769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17q11.2		rs34379769-G	0.573003	2E-9		0.023717	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
788	chr17	26638620	26638620	rs34379769	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs34379769-G	0.573003	5E-8		0.0225946	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
788	chr17	26644667	26644668	rs241775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TMEM97	rs241775-T	0.478	2E-13	(Glutathione S-transferase A4, GSTA4.14645.253.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UTS2	5,348 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	9E-29		0.188909	[0.16-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLCG1	5,337 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	2E-15		0.12904	[0.097-0.161] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITGB2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	2E-28		0.199242	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBD	5,346 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	3E-13		0.126911	[0.093-0.161] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FZD10	5,345 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	2E-14		0.131981	[0.098-0.166] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD6	5,345 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	3E-31		0.204618	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC4A	5,363 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	1E-14		0.14353	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDK8;CCNC	5,352 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	1E-12		0.122559	[0.089-0.156] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD58	5,335 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	7E-16		0.131546	[0.1-0.163] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AURKB	5,338 Icelandic ancestry individuals	NA	17q11.2		rs11080055-A	0.456	3E-17		0.134622	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26649723	26649724	rs11080055	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TMEM97	rs11080055-C	0.508	4E-12	(PAX-interacting protein 1, PAXIP1.12894.3.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26649723	26649724	rs11080055	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	17q11.2	TMEM97, VTN	rs11080055-?	NR	1E-8	(EA)	1.098901		Illumina [12023830] (imputed)	N
788	chr17	26664214	26664215	rs3093679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	17q11.2		rs3093679-A	0.156712	6E-9		0.0381919	[0.025-0.051] unit decrease	Illumina [13461863] (imputed)	N
788	chr17	26664214	26664215	rs3093679	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	17q11.2	TNFAIP1	rs3093679-?	NR	2E-9		0.04275	[0.029-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
788	chr17	26664805	26664806	rs3093680	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8B	5,327 Icelandic ancestry individuals	NA	17q11.2		rs3093680-T	0.3828	3E-14		0.122224	[0.091-0.154] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26665647	26665648	rs1007398	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM185A	5,342 Icelandic ancestry individuals	NA	17q11.2		rs1007398-A	0.3827	4E-12		0.123979	[0.089-0.159] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26670626	26670627	rs3093692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZPBP	5,340 Icelandic ancestry individuals	NA	17q11.2		rs3093692-G	0.4509	1E-15		0.131775	[0.1-0.164] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26670626	26670627	rs3093692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VRK1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs3093692-G	0.4509	8E-13		0.130881	[0.095-0.167] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26670626	26670627	rs3093692	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GOSR2	5,339 Icelandic ancestry individuals	NA	17q11.2		rs3093692-G	0.4509	1E-15		0.134167	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26670626	26670627	rs3093692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q11.2		rs3093692-A	NR	1E-8		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
788	chr17	26670626	26670627	rs3093692	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TNFAIP1	rs3093692-A	0.508	5E-16	(Cadherin-12, CDH12.10701.30.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26671195	26671196	rs733914	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC30A3	5,357 Icelandic ancestry individuals	NA	17q11.2		rs733914-C	0.451	2E-16		0.148367	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26671195	26671196	rs733914	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP1	5,340 Icelandic ancestry individuals	NA	17q11.2		rs733914-C	0.451	4E-29		0.189036	[0.16-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26676134	26676135	rs13469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASGR2	5,357 Icelandic ancestry individuals	NA	17q11.2		rs13469-C	0.4536	7E-18		0.156855	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26676134	26676135	rs13469	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	17q11.2	NR	rs13469-C	0.48	1E-8		0.03	[0.022-0.038] unit increase	NR [9704453]	N
788	chr17	26676134	26676135	rs13469	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	17q11.2	NR	rs13469-C	0.48	2E-7		0.02	[0.012-0.028] unit increase	NR [9704453]	N
788	chr17	26676134	26676135	rs13469	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TNFAIP1	rs13469-T	0.508	3E-26	(Exostosin-like 2, EXTL2.6528.95.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26676930	26676931	rs1858837	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C4orf32	5,352 Icelandic ancestry individuals	NA	17q11.2		rs1858837-T	0.2558	2E-12		0.141391	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26678959	26678960	rs2073867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STAT6	5,363 Icelandic ancestry individuals	NA	17q11.2		rs2073867-G	0.4541	3E-14		0.137252	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26678959	26678960	rs2073867	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TNFAIP1	rs2073867-C	0.508	9E-19	(Annexin A10, ANXA10.13605.16.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26678959	26678960	rs2073867	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TNFAIP1	rs2073867-C	0.508	3E-18	(Protein sel-1 homolog 2, SEL1L2.9082.25.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26678959	26678960	rs2073867	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TNFAIP1	rs2073867-C	0.508	2E-15	(Zona pellucida sperm-binding protein 4, ZP4.7766.25.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26679563	26679563	rs3032928	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	POLDIP2	rs3032928-CTTT	0.456	4E-13	(Mannan-binding lectin serine protease 1, MASP1.3605.77.4)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26688662	26688663	rs708100	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UPK3BL	5,336 Icelandic ancestry individuals	NA	17q11.2		rs708100-G	0.4518	1E-31		0.194569	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26688662	26688663	rs708100	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVPL	5,357 Icelandic ancestry individuals	NA	17q11.2		rs708100-G	0.4518	2E-27		0.197404	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26688662	26688663	rs708100	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	TMEM199	rs708100-A	0.509	2E-15	(Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+), SLC6A14.13053.6.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26689640	26689641	rs756766	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q11.2	NR	rs756766-?	NR	7E-6	(EA)	0.5607	[0.32-0.8] unit decrease	Illumina [up to 11892802] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	9E-12		0.0276104	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	2E-9		0.0244043	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	1E-9		0.0249356	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	1E-20		0.0370553	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	2E-13		0.0299998	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	6E-18		0.0332404	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	8E-11		0.0266237	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	7E-9		0.0237635	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	6E-9		0.0237068	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	4E-10		0.025189	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	3E-8		0.0220908	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q11.2		rs704-G	0.523974	7E-12		0.0278483	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZPLD1	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-21		0.171976	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZPBP2	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-15		0.138679	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZP4	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-17		0.144516	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNRF3	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-38		0.237692	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF275	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-31		0.211406	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF10	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-35		0.211867	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZFYVE27	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-79		0.341621	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAQ;SFN;YWHAB;YWHAE;YWHAG;YWHAH;YWHAZ	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-41		0.245	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YBX2	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-17		0.142286	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XCL1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-14		0.137102	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WNT3A	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-76		0.31418	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC3	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-19		0.16054	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC10B	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-13		0.135523	[0.099-0.172] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WDR1	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-107		0.361725	[0.33-0.39] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-91		0.366566	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VTN	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-14		0.131283	[0.097-0.166] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VSTM5	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-39		0.236459	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VPS29	5,334 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-53		0.253383	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP21	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-52		0.260549	[0.23-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UGT2A2	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-71		0.311312	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UCMA	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-27		0.190282	[0.16-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBXN4	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-114		0.398809	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBE3A	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-49		0.255544	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBE2G2	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-18		0.161612	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBE2D4	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-31		0.211057	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBC	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-20		0.164317	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYMSOS	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-40		0.228389	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNIP	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-17		0.143534	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TWF1	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-65		0.308596	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TUFT1	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-16		0.13774	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TSNARE1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-24		0.179323	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIL	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-146		0.452865	[0.42-0.49] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRIB2	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-39		0.239995	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRH	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-18		0.161466	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREM2	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-13		0.130326	[0.095-0.166] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRADD	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-18		0.148196	[0.12-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TRABD	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-76		0.334285	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPT1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-173		0.462031	[0.43-0.49] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-68		0.29694	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNNT2	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-64		0.291833	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNNI3	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-13		0.131673	[0.096-0.167] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF11	5,335 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-13		0.121267	[0.089-0.154] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF1B	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-32		0.215337	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF1A	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-26		0.191774	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF12A	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-243		0.573669	[0.54-0.61] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF11B	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-17		0.144002	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF11A	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-86		0.337923	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF10A	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-24		0.168913	[0.14-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM132B	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-23		0.172265	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-48		0.258312	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TLR2	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-32		0.197106	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TINF2	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-15		0.141252	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIGAR	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-39		0.234444	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THSD1	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-42		0.230853	[0.2-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein THRA	5,336 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-74		0.294184	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEX29	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-15		0.133447	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEX29	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-20		0.157319	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TESC	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-21		0.174051	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TENM4	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-17		0.151902	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TEC	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-13		0.125844	[0.092-0.16] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCTN2	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-28		0.203436	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCP11	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-230		0.542621	[0.51-0.58] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCEA2	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-16		0.138936	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAX1BP3	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-30		0.200532	[0.17-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TARDBP	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-15		0.140593	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAGLN2	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-62		0.304105	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAGLN2	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-55		0.273108	[0.24-0.31] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TAB1;MAP3K7	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-37		0.218338	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYTL4	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.138508	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYNGR3	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-17		0.157872	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULT4A1	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-14		0.142862	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX3	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-17		0.156427	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX1B	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-20		0.166194	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX1A	5,334 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-112		0.346997	[0.32-0.38] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STOML2	5,325 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-15		0.110042	[0.082-0.138] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STK17B	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-73		0.305518	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STK16	5,336 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-69		0.284602	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STIM1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-299		0.600671	[0.57-0.63] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STAU2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-18		0.154282	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STAP1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-31		0.213586	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST6GALNAC1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-40		0.235532	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST14	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-55		0.257872	[0.23-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SRXN1	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-24		0.171481	[0.14-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SRL	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-18		0.15494	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPSB1	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-29		0.199253	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPRN	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-107		0.386804	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPOCK3	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-46		0.259862	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINK5	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-33		0.204735	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPHK2	5,332 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-13		0.114354	[0.084-0.145] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPATA20	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-133		0.431646	[0.4-0.47] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPARC	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-26		0.184033	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPACA3	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-206		0.507892	[0.48-0.54] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SORCS2	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-12		0.132702	[0.096-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNU13	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-36		0.227499	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNRPF	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-290		0.577055	[0.55-0.61] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMR3A	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-44		0.250572	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMPDL3A	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-39		0.2256	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMOC1	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-13		0.11858	[0.086-0.151] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMIM9	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-14		0.132227	[0.098-0.167] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMIM10	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-219		0.516919	[0.48-0.55] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMAD3	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-183		0.472005	[0.44-0.5] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLITRK4	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-38		0.224079	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLITRK1	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.138387	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC6A14	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-18		0.150519	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC5A5	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-80		0.349569	[0.31-0.39] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC3A1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-184		0.492052	[0.46-0.53] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC26A11	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-13		0.131375	[0.096-0.167] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC25A18	5,337 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-18		0.142088	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC22A16	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-136		0.432301	[0.4-0.47] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC14A2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-20		0.17249	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT2	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-67		0.306415	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC12	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-260		0.560114	[0.53-0.59] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SH2D3C	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-82		0.334875	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SH2D1A	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-172		0.465544	[0.43-0.5] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFXN5	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-41		0.235207	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFRP2	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-55		0.266685	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFN	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-70		0.306456	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SF1	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-35		0.206592	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINI2	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-16		0.149321	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINB1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-17		0.15167	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINA12	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.149369	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEPT10	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-21		0.166382	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3A	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-260		0.560653	[0.53-0.59] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SELL	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-16		0.145391	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SECTM1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-31		0.211859	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEC11C	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-62		0.288505	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCO1	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-16		0.142707	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCMH1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-40		0.237931	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCGN	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-48		0.251574	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RYK	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-17		0.155162	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RUFY1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-44		0.242969	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM2B	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-41		0.24374	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRAS2	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-15		0.144568	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPSA	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-30		0.20879	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROR1	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-61		0.295442	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ROCK2	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-151		0.462744	[0.43-0.5] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF8	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-81		0.325291	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF41	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-21		0.178159	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF149	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-18		0.157698	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF146	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-17		0.144327	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF13	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-288		0.57278	[0.54-0.6] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF122	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-40		0.220843	[0.19-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RMI1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-30		0.209005	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RLN2	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-29		0.200417	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIC3	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-58		0.284501	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RFFL	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-195		0.489312	[0.46-0.52] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RFESD	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-101		0.373428	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RELB	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-46		0.236094	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RDH16	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-112		0.38918	[0.36-0.42] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RCN2	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-28		0.18455	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RCAN1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-32		0.204895	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBM28	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-42		0.244672	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBBP9	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-14		0.132104	[0.097-0.167] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RASA1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-81		0.3358	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAD51D	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-66		0.300358	[0.27-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RABEPK	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-32		0.207685	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB5C	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-43		0.233816	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB35	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-43		0.248051	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB18	5,332 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-70		0.253991	[0.23-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB14	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-37		0.215817	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QSOX2	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-13		0.127641	[0.093-0.162] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PXYLP1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-130		0.401445	[0.37-0.43] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PVRIG	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-31		0.202835	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PUF60	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-41		0.240018	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRH	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-49		0.265004	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD9	5,326 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-36		0.176334	[0.15-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-13		0.134637	[0.099-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMD1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-24		0.181808	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSMA1	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-29		0.192054	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG2	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-16		0.149117	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS27	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-64		0.288663	[0.26-0.32] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRPF6	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-20		0.165897	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRLR	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-49		0.25463	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPP3R1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-68		0.306899	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPIB	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-45		0.254681	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POFUT2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-71		0.311114	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNPLA2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-108		0.392848	[0.36-0.43] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PMEL	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-29		0.205638	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC2	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-14		0.13665	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLIN3	5,329 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-15		0.128334	[0.097-0.16] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKN1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-59		0.288677	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKLR	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-49		0.258654	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKD2	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-86		0.322407	[0.29-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIK3R1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-95		0.374074	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGM1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-18		0.153993	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFN2	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-17		0.146961	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFKFB3	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-88		0.346156	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PENK	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-23		0.177096	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDK1	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-306		0.611119	[0.58-0.64] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA4	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-13		0.0498293	[0.036-0.063] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDIA3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-56		0.271637	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDE3A	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-25		0.188248	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDE2A	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-56		0.278873	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDE11A	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-22		0.163595	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCYOX1L	5,334 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-55		0.238618	[0.21-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB4	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-37		0.219094	[0.19-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHB14	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-62		0.291498	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDH10	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-39		0.242097	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSCAR	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-14		0.134648	[0.099-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OPCML	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-42		0.222742	[0.19-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OOSP2	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-12		0.125475	[0.09-0.161] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLFM3	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-137		0.422169	[0.39-0.46] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLA1	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-16		0.15292	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OCRL	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-18		0.151476	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OCIAD1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-96		0.354199	[0.32-0.39] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXPH3	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-26		0.195974	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUP210	5,334 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-16		0.132151	[0.1-0.164] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT12	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-29		0.191614	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUCB1	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-28		0.177847	[0.15-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NTRK1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-32		0.212314	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NSF	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-40		0.226705	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NSDHL	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-25		0.191315	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRXN3	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-14		0.134313	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRSN1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-72		0.326127	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRAS	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-30		0.214273	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NR1H2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-263		0.563103	[0.53-0.59] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NQO2	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-46		0.267222	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPIPB3	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-58		0.2811	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NMRAL1	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-204		0.490986	[0.46-0.52] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NHLRC3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-62		0.298369	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NEURL4	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-213		0.519659	[0.49-0.55] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFB4	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-285		0.601459	[0.57-0.63] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDNF	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-16		0.141691	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDC80	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-56		0.26799	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR1	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-22		0.172729	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCOA2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-15		0.144271	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCMAP	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-77		0.318418	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAT1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-63		0.292347	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAPB	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-25		0.180756	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGS	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-12		0.12636	[0.09-0.163] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAB1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-84		0.345884	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYRF	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.185629	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUC1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-46		0.257257	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUC1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-15		0.138141	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MTPAP	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-202		0.49307	[0.46-0.52] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MT1F	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-50		0.256566	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MSTN	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-37		0.217368	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MSTN	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-107		0.371285	[0.34-0.4] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MSR1	5,337 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-20		0.154505	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL58	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-33		0.214224	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL14	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-12		0.129367	[0.092-0.166] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPZL2	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-60		0.286118	[0.25-0.32] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPP6	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-81		0.332435	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MOB1A	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-85		0.342558	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP13	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-216		0.53676	[0.5-0.57] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMEL1	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-26		0.18086	[0.15-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MLEC	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-13		0.122165	[0.089-0.155] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MIOX	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-32		0.207995	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MICALL2	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-130		0.404263	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGAT4A	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.182334	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MGA	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-180		0.482614	[0.45-0.52] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFN1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-38		0.237431	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFF	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-100		0.34588	[0.31-0.38] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFAP4	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-121		0.399711	[0.37-0.43] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MFAP3L	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-15		0.134985	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein METTL1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-77		0.334112	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MDM4	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-22		0.177769	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MDM2	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-20		0.154399	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCF2L	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-14		0.136491	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCEE	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-16		0.148084	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAZ	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-34		0.221182	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MASP1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-103		0.36125	[0.33-0.39] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MARCO	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-20		0.160651	[0.13-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK12	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-19		0.155087	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K3	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-108		0.375623	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN2B2	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-81		0.320884	[0.29-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1B1	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.139509	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAGEA3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.135308	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAGEA10	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-20		0.157396	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MADCAM1	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-37		0.225529	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein M6PR	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-35		0.218861	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LY96;TLR4	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-104		0.376002	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LY6G6C	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-64		0.300486	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRTM2	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-24		0.179288	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC37A2	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-33		0.217302	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPPRC	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-57		0.287025	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPAP1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-33		0.217219	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP2	5,334 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-18		0.139543	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1B	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-74		0.324007	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.148114	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LOC652493	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-71		0.311591	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LMCD1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-28		0.202935	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LMAN2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-101		0.368071	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIPN	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-82		0.325492	[0.29-0.36] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LIF	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-37		0.234089	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGMN	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-55		0.265809	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS7B	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-28		0.19931	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LEMD1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.141377	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDOC1	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-82		0.329462	[0.3-0.36] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRTDAP	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-102		0.363088	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-111		0.374432	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK15	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-109		0.371555	[0.34-0.4] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK14	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-39		0.231442	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLHL13	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-32		0.206851	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIR2DL2	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-108		0.372041	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIF3A	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-262		0.5377	[0.51-0.57] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIF22	5,336 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-24		0.167846	[0.14-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIF1C	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-64		0.307773	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA1024	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-35		0.211246	[0.18-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-29		0.203215	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNG4	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-13		0.124373	[0.091-0.158] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNA10	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-21		0.166153	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JARID2	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-17		0.140223	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAM2	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-37		0.204882	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAKMIP3	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-31		0.197339	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAK2	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-72		0.318755	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITSN1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-28		0.199515	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ISOC1	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-16		0.150475	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-190		0.496021	[0.46-0.53] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36G	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-35		0.219608	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL36A	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-38		0.228557	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL22RA2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-17		0.151665	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL22	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-30		0.209037	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1B	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-25		0.189731	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RB	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-45		0.257956	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL13RA1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-247		0.566226	[0.53-0.6] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-65		0.304927	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFL3	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-14		0.135351	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNA7	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-18		0.164742	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNA2	5,324 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-35		0.18791	[0.16-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFIT2	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-23		0.176234	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICOSLG	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-57		0.287381	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IBSP	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-44		0.258842	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTR2A	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-12		0.126711	[0.091-0.162] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HTATIP2	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-13		0.127402	[0.093-0.161] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA6	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-39		0.2276	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1L	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-45		0.244622	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSD17B1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-66		0.296244	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HS6ST1	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-16		0.150499	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HRC	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-24		0.187971	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HPGD	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-39		0.225349	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPH1	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-22		0.182179	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HMGCS1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.136085	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIST3H2A	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-14		0.132897	[0.098-0.168] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HINT2	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-48		0.270445	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIF1A	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-15		0.137726	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HHLA2	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-19		0.149617	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HERC5	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-43		0.236828	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDHD2	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-21		0.170945	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HCAR2	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-50		0.271003	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBZ	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-116		0.385711	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTM3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-64		0.310205	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTA1	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-28		0.188747	[0.16-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRP	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-124		0.426865	[0.39-0.46] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRIA4	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-40		0.234786	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRB7	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-30		0.191739	[0.16-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRB14	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-72		0.306796	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAP2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-17		0.149721	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAP	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-26		0.183698	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-20		0.172562	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPR68	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-38		0.216495	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPR135	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-98		0.370392	[0.34-0.4] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPD1L	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-20		0.155761	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPC1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-84		0.339916	[0.31-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNRH1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-21		0.173415	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GHRL	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-27		0.195347	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDF9	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.183656	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDA	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-40		0.237909	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCSH	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-115		0.409399	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCNT4	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-247		0.549726	[0.52-0.58] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCK	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-54		0.27559	[0.24-0.31] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GBP6	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-47		0.248286	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT2	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-83		0.333778	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GAL3ST1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-25		0.184464	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GABBR2	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-27		0.188654	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT9	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-230		0.538029	[0.51-0.57] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTH1;FTL	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-24		0.184824	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FST	5,329 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-22		0.158542	[0.13-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOXRED1	5,332 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-26		0.151386	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOLR3	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-61		0.304328	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLT3	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-119		0.367931	[0.34-0.4] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLRT1	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-13		0.12204	[0.089-0.155] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLNA	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-24		0.185405	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLNA	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-22		0.178956	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FKBP2	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.178548	[0.15-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGFRL1	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-13		0.135796	[0.099-0.173] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGFBP1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-21		0.169232	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF10	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-27		0.189767	[0.16-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCRL4	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-13		0.132092	[0.096-0.168] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCRL2	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-51		0.277375	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FBXL4	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-73		0.317677	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FARS2	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-19		0.155399	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-90		0.353356	[0.32-0.39] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM210A	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-27		0.201657	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM19A3	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.140788	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EZR	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-24		0.177918	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETHE1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-41		0.239887	[0.21-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESRP1	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-16		0.149493	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ESD	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-178		0.49197	[0.46-0.53] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP44	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-16		0.147624	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERO1A	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-34		0.218511	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERLIN1	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-16		0.14189	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EQTN	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-66		0.309064	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB4	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-80		0.31412	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHB2	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-33		0.213489	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPHA5	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-25		0.185535	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENOX2	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-41		0.229943	[0.2-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENAH	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-52		0.273805	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMILIN3	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-51		0.270985	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMID1	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.132095	[0.098-0.166] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ELL	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-22		0.16618	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ELK1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-28		0.197783	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EIF1AD	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-13		0.136329	[0.1-0.173] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EHD4	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-86		0.339991	[0.31-0.37] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EFNB1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-46		0.253737	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EFNA2	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-15		0.143563	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDN2	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-228		0.554119	[0.52-0.59] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDDM3A	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-45		0.207038	[0.18-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECI2	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-28		0.20497	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECE1	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-174		0.454558	[0.42-0.49] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECE1	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-17		0.145039	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EBI3;IL27	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-16		0.14097	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EBI3	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.139539	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DYRK3	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-84		0.328729	[0.3-0.36] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DYNLRB1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.140429	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DYNAP	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-286		0.571229	[0.54-0.6] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DUSP4	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-33		0.213657	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSC1	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-185		0.465858	[0.43-0.5] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPP7	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-40		0.24147	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-13		0.133029	[0.098-0.168] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC4	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-55		0.266269	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB9	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-65		0.3089	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB14	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-74		0.310912	[0.28-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DMKN	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-121		0.409688	[0.38-0.44] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLK1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-17		0.153828	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLG3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-12		0.130479	[0.095-0.166] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKKL1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-90		0.345808	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DIABLO	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-198		0.485805	[0.45-0.52] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DHFR	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.142453	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DERL1	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-16		0.140511	[0.11-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB121	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-27		0.193322	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB105B	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-14		0.131113	[0.097-0.165] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEF6	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-63		0.293667	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEAF1	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-43		0.230927	[0.2-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDX46	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-52		0.268346	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDX23	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-120		0.393436	[0.36-0.43] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-13		0.131754	[0.096-0.167] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DDR1	5,340 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-16		0.139822	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCUN1D5	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-49		0.246242	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCP1A	5,337 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-39		0.223511	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DAPK2	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-32		0.203479	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL2;CXCL3	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-48		0.255968	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-30		0.201913	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTXN3	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-197		0.506546	[0.47-0.54] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSH	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.190622	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSB	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-27		0.200881	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTRL	5,337 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-16		0.137659	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTNNB1	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-16		0.139386	[0.11-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTNNB1	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-12		0.12089	[0.087-0.155] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSTL1	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-17		0.144894	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST8	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-10		0.112506	[0.077-0.148] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSNK2B	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-82		0.334517	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSN1S1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-14		0.137459	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSH1;CSH2	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-18		0.15059	[0.12-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF3	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-21		0.169635	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF2RA	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-22		0.180317	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREBBP	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-95		0.333805	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRABP2	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-36		0.218515	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPVL	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-20		0.174627	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPM	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-42		0.240841	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COX7A2L	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-15		0.147605	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COX7A1	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-59		0.293269	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COTL1	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-172		0.460423	[0.43-0.49] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COPS2	5,368 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-280		0.593948	[0.56-0.63] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLGALT1	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-13		0.131225	[0.096-0.167] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTNAP5	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-115		0.40151	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNGA2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-98		0.371348	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-75		0.312285	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLMP	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-95		0.362947	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLK2	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-113		0.389934	[0.36-0.42] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLIC1	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-18		0.156687	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC4G	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-59		0.289795	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC2D	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-21		0.166289	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC12B	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-58		0.286364	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLCNKB	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-21		0.173085	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLCA2	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-44		0.231914	[0.2-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLCA1	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-21		0.167298	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLC	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-23		0.173413	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKAP2	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-12		0.124576	[0.09-0.159] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHKB	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-223		0.54635	[0.51-0.58] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHIT1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-26		0.195532	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CETN2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-201		0.512823	[0.48-0.55] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDKN2B	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-44		0.231009	[0.2-0.26] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH6	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-123		0.392969	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH3	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-146		0.432623	[0.4-0.47] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH2	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-38		0.230428	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH15	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-58		0.26752	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH15	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-60		0.280268	[0.25-0.31] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH12	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-141		0.42128	[0.39-0.45] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDH11	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-64		0.280879	[0.25-0.31] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDCP1	5,349 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-54		0.265749	[0.23-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDC42BPB	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-64		0.289497	[0.26-0.32] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDC34	5,342 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-13		0.123648	[0.091-0.157] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD99L2	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-50		0.243788	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD96	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-63		0.291938	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD74	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-15		0.149701	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD63	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-44		0.244517	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD47	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-52		0.251698	[0.22-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD34	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-119		0.409992	[0.38-0.44] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD34	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-59		0.28148	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300E	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-20		0.159456	[0.13-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD27	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-26		0.191552	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCNB1IP1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-56		0.281988	[0.25-0.32] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL3L3	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-18		0.149923	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBLN1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-91		0.353859	[0.32-0.39] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CASQ1	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-22		0.159372	[0.13-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CALCOCO2	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-12		0.127849	[0.093-0.163] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CADM3	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-49		0.255317	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CABP7	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	8E-63		0.304332	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C8A;C8B;C8G	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-22		0.155741	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C7	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-47		0.234823	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5orf63	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-73		0.303618	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5orf46	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-39		0.22581	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf66	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-201		0.512718	[0.48-0.55] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C20orf173	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-22		0.176854	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1orf185	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-37		0.233414	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QTNF1	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-151		0.434562	[0.4-0.47] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QBP	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-59		0.260205	[0.23-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C14orf180	5,350 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-32		0.202692	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BRICD5	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-17		0.148826	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BRF1	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-23		0.167538	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP6	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-93		0.344624	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP15	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.144575	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BLVRA	5,366 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.14075	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAR3	5,359 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-19		0.15596	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAR3	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-15		0.139578	[0.11-0.17] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BACH2	5,348 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-28		0.194615	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BACH1	5,346 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-33		0.209823	[0.18-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZGP1	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-33		0.218774	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP2A3	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-18		0.163603	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP1B1	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-43		0.236237	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP13A1	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-222		0.511638	[0.48-0.54] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASTL	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-20		0.162578	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASIP	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-19		0.16979	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASGR1	5,352 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-49		0.25706	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARRB1	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-15		0.148326	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARPC3	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-39		0.228302	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARHGEF7	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-67		0.283831	[0.25-0.32] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARFIP1	5,339 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-73		0.294564	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARFGAP1	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-25		0.184696	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-107		0.386652	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOA5	5,362 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-36		0.225721	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APMAP	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-28		0.192881	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APBB3	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-23		0.179267	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APBB3	5,338 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-222		0.514152	[0.48-0.55] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APBB1	5,333 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-60		0.270802	[0.24-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL7	5,364 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-14		0.139786	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL4	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-35		0.218538	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL3	5,327 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-12		0.107556	[0.077-0.138] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANGPTL1	5,343 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-13		0.125801	[0.092-0.16] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALDH1A3	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	6E-38		0.233218	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIFM1	5,354 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-94		0.360764	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIF1	5,344 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-62		0.265389	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSP	5,333 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-29		0.176054	[0.15-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSG	5,361 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-19		0.161677	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSA1	5,351 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-25		0.185608	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AGA	5,345 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-18		0.14919	[0.12-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADSL	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	7E-19		0.16436	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADRM1	5,355 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-29		0.201545	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADM	5,363 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-21		0.172659	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADI1	5,341 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-50		0.255959	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADH5	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-13		0.132809	[0.097-0.168] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADCYAP1	5,353 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-43		0.243488	[0.21-0.28] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADCYAP1	5,333 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-65		0.272083	[0.24-0.3] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAMTS6	5,357 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	3E-28		0.196486	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM7	5,347 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	5E-18		0.15425	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP2	5,365 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	1E-77		0.334313	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACE2	5,356 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-18		0.151862	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACBD7	5,367 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	9E-45		0.247437	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACAP2	5,360 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	4E-21		0.172569	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ABL2	5,358 Icelandic ancestry individuals	NA	17q11.2		rs704-G	0.4928	2E-74		0.312789	[0.28-0.35] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26694860	26694861	rs704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q11.2		rs704-A	NR	2E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
788	chr17	26694860	26694861	rs704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q11.2		rs704-A	NR	3E-8		0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
788	chr17	26694860	26694861	rs704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q11.2		rs704-A	NR	5E-17		0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
788	chr17	26694860	26694861	rs704	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q11.2	VTN	rs704-?		1E-10		0.0289	[0.02-0.038] unit decrease	Illumina [31500000] (imputed)	N
788	chr17	26694860	26694861	rs704	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17q11.2		rs704-A	0.4765	1E-10		0.13597398	[0.092-0.18] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
788	chr17	26694860	26694861	rs704	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	17q11.2		rs704-A	0.4869	8E-9		5.77038	z score decrease	Affymetrix, Illumina [246710] (imputed)	N
788	chr17	26694860	26694861	rs704	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	17q11.2		rs704-A	0.4851	3E-8		0.074507445	[0.049-0.1] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
788	chr17	26694860	26694861	rs704	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	17q11.2		rs704-A	0.48	6E-26		0.1029	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
788	chr17	26694860	26694861	rs704	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	17q11.2		rs704-A	0.47	3E-76		0.1442	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
788	chr17	26694860	26694861	rs704	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	17q11.2		rs704-A	0.47	1E-53		0.1272	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
788	chr17	26694860	26694861	rs704	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q11.2	TMEM199	rs704-G	0.52427	2E-9		0.0120525	[0.0081-0.016] unit increase	Affymetrix [NR] (imputed)	N
788	chr17	26694860	26694861	rs704	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q11.2	TMEM199	rs704-G	0.524277	9E-13		0.0149279	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
788	chr17	26694860	26694861	rs704	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q11.2	TMEM199	rs704-G	0.524281	4E-18		0.0180904	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
788	chr17	26694860	26694861	rs704	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q11.2	VTN, TMEM199	rs704-?	NR	3E-15		0.0203	[0.016-0.025] unit increase	Affymetrix [5701386] (imputed)	N
788	chr17	26694860	26694861	rs704	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q11.2	VTN	rs704-G	0.52249	2E-15		0.0146807	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
788	chr17	26694860	26694861	rs704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs704-?	NR	2E-20				NR [~ 8900000] (imputed)	N
788	chr17	26694860	26694861	rs704	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q11.2	VTN	rs704-A	0.5011	1E-13		0.0192	[0.014-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-9	(VEGFA, 2597_8_3)	0.14123245	[0.093-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-9	(SYNGR3, 13375_48_3)	0.14115949	[0.093-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-9	(SEL1L2, 9082_25_3)	0.13655268	[0.09-0.183] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-9	(LCMT1, 4237_70_3)	0.13764179	[0.091-0.184] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-68	(UBXN4, 9970_7_3)	0.41148505	[0.37-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-66	(DMKN, 5963_9_3)	0.4062799	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-57	(RFESD, 13603_7_3)	0.37302333	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-52	(PKD2, 13486_9_3)	0.35848558	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-33	(RIC3, 11228_37_3)	0.2924537	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-33	(EMILIN3, 9991_112_3)	0.2864665	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-33	(CDCP1, 8589_13_3)	0.27721334	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-27	(CADM3, 3630_27_4)	0.2503785	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-25	(RRM2B, 8854_59_3)	0.25333187	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-23	(SF1, 12777_11_3)	0.23397437	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-214	(RNMTL1, 9584_105_3)	0.69801646	[0.66-0.74] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-18	(RMI1, 13926_1_3)	0.20655902	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-17	(CXCL1, 2985_35_1)	0.19703378	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-16	(CCL3L1, 2783_18_2)	0.19187762	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-15	(NAPB, 12655_30_3)	0.18354651	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-14	(ZP4, 7766_25_3)	0.17520495	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-1306	(MINOS1, 7956_11_3)	1.2908332	[1.27-1.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-111	(CETN2, 13078_3_3)	0.52402484	[0.48-0.57] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-11	(KLRC4, 10552_88_3)	0.16021216	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-11	(COX7A2L, 9590_10_3)	0.15589684	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	9E-10	(SLC25A18, 5280_68_5)	0.14975943	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-9	(TYRO3, 13668_44_3)	0.14135878	[0.093-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-9	(ERLIN1, 8776_10_3)	0.14222248	[0.094-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-9	(CLEC4A, 8853_2_3)	0.13957968	[0.092-0.187] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-883	(ASAP2, 13518_5_3)	1.174808	[1.15-1.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-806	(VTN, 13125_45_3)	1.131848	[1.11-1.16] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-60	(GRP, 8400_74_3)	0.39441034	[0.35-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-51	(FAM3B, 5618_50_3)	0.35557368	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-47	(TNFRSF11A, 5424_55_3)	0.33785984	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-47	(THRA, 12527_50_3)	0.3437732	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-436	(JAK2, 4998_50_2)	0.9657885	[0.93-1] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-42	(COX7A1, 8390_25_3)	0.32005003	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-38	(SFN, 4829_43_6)	0.3040416	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-36	(APBB1, 12822_34_3)	0.2970757	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-35	(GSTM3, 9748_31_3)	0.29928946	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-30	(CD47, 6653_58_3)	0.27238566	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-30	(ASGR1, 5452_71_3)	0.27420938	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-28	(CD99L2, 10539_30_3)	0.25793245	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-26	(MT1F, 10416_79_3)	0.25086352	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-26	(CDKN2B, 9874_28_3)	0.24556148	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-252	(RLBP1, 12936_38_3)	0.748111	[0.71-0.79] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-25	(RELB, 11464_9_3)	0.24908575	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-22	(ANGPTL4, 3796_79_2)	0.22719313	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-19	(MSTN, 14583_49_3)	0.20673043	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-17	(APMAP, 10605_22_3)	0.20194305	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-16	(BACH2, 12756_3_3)	0.19463849	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-15	(ITGB2, 12750_9_3)	0.18918058	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-15	(CLC, 11094_104_3)	0.192109	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-14	(C20orf173, 7046_6_3)	0.18223011	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-13	(UBC, 6647_55_3)	0.17119402	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-13	(GNRH1, 5627_53_3)	0.17542426	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-11	(ASGR2, 9474_22_3)	0.15676095	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	8E-10	(TPM3, 9890_8_3)	0.14799683	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-96	(TPT1, 14072_9_3)	0.4879653	[0.44-0.53] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-760	(NPFF, 5617_41_3)	1.1367371	[1.11-1.16] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-69	(SPATA20, 11117_2_3)	0.4184924	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-58	(MSTN, 12077_32_3)	0.3688452	[0.32-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-50	(CSNK2B, 11330_15_3)	0.34847638	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-44	(LOC652493, 6561_77_3)	0.33136708	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-31	(DCUN1D5, 8760_10_3)	0.27636015	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-31	(CDH15, 11215_6_3)	0.27203542	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-30	(FOLR3, 5624_66_3)	0.27226162	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-24	(VSTM5, 8271_24_3)	0.24248755	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-24	(RBM28, 11927_3_3)	0.24562657	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-23	(OPCML, 3634_5_4)	0.22909442	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-23	(ACBD7, 13563_259_3)	0.23293594	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-21	(STAP1, 12510_3_3)	0.22367886	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-205	(OLFML3, 8660_33_3)	0.6859976	[0.65-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-20	(MAZ, 13436_54_3)	0.22531298	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-19	(TAX1BP3, 12498_12_3)	0.21411332	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-19	(NUDT12, 13947_371_3)	0.21024068	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-181	(NUDC, 8887_21_3)	0.6359931	[0.6-0.68] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-18	(DUSP4, 10035_6_3)	0.20992309	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-17	(MFN1, 11364_18_3)	0.19904926	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-17	(GSTA1, 12446_49_3)	0.19738606	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-17	(CTSH, 3737_6_3)	0.19619434	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-16	(TNFRSF1A, 2654_19_1)	0.19177304	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-16	(LGALS7, 9400_40_3)	0.19197574	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-15	(NSDHL, 8038_41_3)	0.19092862	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-14	(NCR1, 5104_57_3)	0.1764645	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-133	(SIGLEC12, 8352_26_3)	0.5589016	[0.52-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-13	(TSNARE1, 7069_9_4)	0.17302772	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-13	(TRH, 5659_11_3)	0.17479073	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-13	(PDE3A, 5254_69_3)	0.17371441	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-13	(C8A C8B C8G, 2429_27_4)	0.16967689	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-122	(SMIM10, 9379_248_3)	0.5502104	[0.51-0.59] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-12	(SRL, 10940_25_3)	0.16363294	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-12	(RNF146, 11401_181_3)	0.16346085	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-12	(OLA1, 12659_13_3)	0.16659644	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-12	(AHSG, 3581_53_3)	0.16086388	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-11	(TUFT1, 5690_49_3)	0.15558134	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-11	(RRAS2, 12361_102_3)	0.1595946	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-11	(FAM19A3, 7839_99_3)	0.15906622	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-10	(PLCG1, 4563_61_2)	0.15033007	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	7E-10	(MFAP3L, 8837_8_3)	0.14887838	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-9	(DUSP26, 8967_6_3)	0.13863595	[0.092-0.185] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-9	(BLVRA, 11382_5_3)	0.13906687	[0.092-0.186] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-72	(MICALL2, 12891_1_3)	0.42351624	[0.38-0.47] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-67	(FLT3, 3437_80_3)	0.39477634	[0.35-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-66	(STX1A, 3766_51_4)	0.4089058	[0.36-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-66	(KLRC3, 11571_75_3)	0.41199028	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-65	(DDX23, 13946_8_3)	0.4012	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-59	(TLR4 LY96, 3647_49_4)	0.3781688	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-48	(DKKL1, 3644_5_4)	0.34406972	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-41	(CDH11, 7763_25_3)	0.31978074	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-35	(KIF1C, 9899_28_3)	0.29256764	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-33	(GBP6, 7818_101_3)	0.2822612	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-30	(PDIA3, 4719_58_2)	0.2647042	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-27	(GPR68, 12503_5_3)	0.2531598	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-25	(CPM, 7768_10_3)	0.2469517	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-24	(SLITRK4, 7139_14_3)	0.235804	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-24	(NSF, 13992_12_3)	0.23640569	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-235	(SLC35G2, 13501_10_3)	0.73053443	[0.69-0.77] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-229	(FAM171A2, 13479_8_3)	0.71291953	[0.67-0.75] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-22	(PCDHB4, 10522_167_3)	0.22855523	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-18	(KDR, 3651_50_5)	0.20775987	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-18	(GRB7, 11281_6_3)	0.21274912	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-18	(C1orf185, 10667_78_3)	0.21326572	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-16	(SPSB1, 13942_140_3)	0.19064318	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-15	(CSF2RA, 10438_19_3)	0.18634692	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-14	(LRTM2, 8906_60_3)	0.17725584	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-13	(PSMD1, 10735_12_3)	0.17800397	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-13	(FLNA, 11124_9_3)	0.1713885	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-13	(ADAM7, 10753_31_3)	0.17476545	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-12	(FGFBP1, 9507_55_3)	0.16759378	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-12	(CLCNKB, 13683_18_3)	0.16481325	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-11	(MSR1, 3684_78_3)	0.1563157	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-11	(IL27 EBI3, 2829_19_2)	0.1603234	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-11	(BMP15, 11129_66_3)	0.15955713	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-11	(ACAP2, 12343_14_3)	0.16361748	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-100	(MGA, 11587_5_3)	0.4950835	[0.45-0.54] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-10	(TRADD, 13507_51_3)	0.14665323	[0.1-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	6E-10	(SULT4A1, 8357_43_3)	0.14922614	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-93	(ECE1, 3611_70_4)	0.46078363	[0.42-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-9	(ZPBP, 8635_283_3)	0.1404515	[0.093-0.188] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-9	(DERL1, 13393_46_3)	0.14039819	[0.094-0.187] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-82	(OLFM3, 11143_32_3)	0.45082012	[0.41-0.5] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-57	(GPR135, 11465_4_3)	0.37752852	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-52	(MFF, 11157_35_3)	0.35944328	[0.31-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-51	(LIPN, 8097_77_3)	0.35142642	[0.31-0.4] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-47	(NAB1, 13933_276_3)	0.3446462	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-41	(WNT3A, 13236_25_3)	0.31282404	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-40	(ZFYVE27, 13432_9_3)	0.3174761	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-385	(MVK, 11391_69_3)	0.9075735	[0.87-0.94] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-38	(ABL2, 5261_13_3)	0.30087206	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-37	(SEC11C, 10658_28_3)	0.3138461	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-35	(ST14, 10927_65_3)	0.30132654	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-35	(IL10RA, 10344_334_3)	0.29448816	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-29	(PDE2A, 5246_64_3)	0.2642637	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-29	(CABP7, 7104_71_3)	0.2742143	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-25	(TIGAR, 12476_50_3)	0.24354607	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-25	(DPP7, 3608_12_5)	0.2470824	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-24	(PPIB, 4718_5_2)	0.23715226	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-24	(ENOX2, 13422_66_3)	0.23611142	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-24	(C5orf46, 9100_32_3)	0.24141844	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-23	(MADCAM1, 11258_41_3)	0.23559318	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-215	(EMC4, 13516_46_3)	0.6890441	[0.65-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-21	(LRRC37A2, 8897_3_3)	0.23075004	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-207	(AIP, 3839_60_2)	0.7007618	[0.66-0.74] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-20	(RAB35, 13514_121_3)	0.22229719	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-19	(SCMH1, 12604_16_3)	0.22026546	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-19	(AZGP1, 9312_8_3)	0.21515113	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-18	(GHRL, 6518_85_3)	0.2056883	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-18	(BRF1, 5384_67_3)	0.20354757	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-15	(TCTN2, 11433_11_3)	0.18663268	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-15	(IL1B, 3037_62_1)	0.18628517	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-15	(EZR, 9753_17_3)	0.18700133	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-145	(IL13RA1, 2633_52_2)	0.600071	[0.56-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-140	(TNFRSF12A, 5138_50_3)	0.5811144	[0.54-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-14	(SERPINB1, 10737_96_3)	0.18293439	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-14	(MMEL1, 3627_71_4)	0.1742207	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-13	(ITSN1, 14070_56_3)	0.17646496	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-13	(ASIP, 5676_54_3)	0.17719322	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-12	(HS6ST1, 5465_32_3)	0.166864	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-112	(DIABLO, 3122_6_2)	0.5186674	[0.48-0.56] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(mtb12, 15007_43_3)	0.15727535	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(TEX29, 10557_6_3)	0.15794128	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(TENM4, 11365_17_3)	0.16010326	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(STX1B, 6966_144_3)	0.16393854	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(PGM1, 9173_21_3)	0.15857635	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(MCEE, 9388_18_3)	0.15904315	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-11	(GRAP2, 5265_12_3)	0.15898257	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-1071	(FKBP6, 12529_32_3)	1.2268604	[1.2-1.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-10	(TEX29, 13500_9_3)	0.1469081	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-10	(SCARA3, 11292_13_3)	0.14920755	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-10	(DYNLRB1, 3845_51_2)	0.15088595	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-10	(BRICD5, 6612_90_3)	0.14872599	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	5E-10	(ARF6, 12425_104_3)	0.15211101	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-99	(CTXN3, 10467_58_3)	0.50990474	[0.46-0.56] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-9	(TWSG1, 9234_8_3)	0.14177878	[0.095-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-9	(STAT6, 10372_18_3)	0.14312477	[0.096-0.191] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-9	(OCRL, 10011_65_3)	0.14127481	[0.094-0.188] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-9	(NRXN3, 7093_20_3)	0.1442176	[0.096-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-9	(HDHD2, 13472_35_3)	0.14400437	[0.096-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-69	(TRIL, 6527_1_3)	0.41532966	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-62	(RDH16, 12881_17_3)	0.39515305	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-61	(APOL1, 9506_10_3)	0.3952914	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-51	(CBLN1, 9313_27_3)	0.35350445	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-49	(MOB1A, 12426_19_3)	0.3427493	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-46	(JAK2, 11816_84_3)	0.33393368	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-43	(GRB14, 13628_58_3)	0.32542494	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-41	(EPHB4, 3612_6_4)	0.31585315	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-387	(GDF5, 2752_62_2)	0.9070528	[0.87-0.94] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-36	(FBXL4, 9951_36_3)	0.29860017	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-35	(PCDHB14, 10715_5_3)	0.29312402	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-349	(ATP4B, 9994_217_3)	0.85740745	[0.82-0.89] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-343	(GPR142, 12766_33_3)	0.83947664	[0.8-0.88] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-34	(CLEC4G, 10781_19_3)	0.29212302	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-320	(GSTP1, 13576_15_3)	0.84372705	[0.81-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-31	(VPS29, 14318_1_3)	0.27874163	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-31	(ADCYAP1, 4594_22_2)	0.275509	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-27	(ZNRF3, 13428_52_3)	0.25918677	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-27	(SFXN5, 13729_26_3)	0.2620483	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-27	(NQO2, 9754_33_3)	0.26448387	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-259	(PPA1, 5021_13_1)	0.7628701	[0.72-0.8] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-25	(HPGD, 4995_16_1)	0.2457756	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-25	(CXCL3 CXCL2, 3148_49_1)	0.24053474	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-24	(YWHAB,YWHAE,YWHAG,YWHAH,YWHAQ,YWHAZ,SFN, 4707_50_2)	0.24810658	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-24	(ST6GALNAC1, 7867_154_3)	0.24108866	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-24	(HSPA1L, 12041_33_3)	0.24882928	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-23	(RUFY1, 11425_31_3)	0.23156707	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-23	(JAM2, 2997_8_1)	0.23416382	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-221	(GPR64, 10767_52_3)	0.7009502	[0.66-0.74] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-22	(ADCYAP1, 4593_11_1)	0.22951959	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-21	(CRABP2, 11696_7_3)	0.22227095	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-202	(HTR6, 13561_5_3)	0.67671317	[0.64-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-20	(RCAN1, 13465_5_3)	0.21871038	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-20	(RAB14, 14283_12_3)	0.22219916	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-18	(SECTM1, 13093_6_3)	0.2113422	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-18	(NUCB1, 10451_11_3)	0.20914403	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-18	(DAPK2, 4355_13_1)	0.20610344	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-18	(APOA5, 12908_15_3)	0.20944043	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-17	(PSMA1, 7880_9_3)	0.19870521	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-17	(ENTPD6, 8932_1_3)	0.20236787	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-16	(KIF22, 12734_112_3)	0.19464359	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-16	(FAM210A, 14593_152_3)	0.19450752	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-157	(SNRPF, 5494_52_3)	0.61720264	[0.57-0.66] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-151	(KIF3A, 13961_18_3)	0.61419106	[0.57-0.66] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-15	(CLCA1, 10496_11_3)	0.18922949	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-143	(PDK1, 5227_60_3)	0.59035087	[0.55-0.63] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-14	(STX3, 7186_111_3)	0.18510766	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-14	(SRXN1, 14268_4_3)	0.18127376	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-13	(CTRL, 9229_9_3)	0.17320214	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-13	(CLEC2D, 7054_87_3)	0.17120303	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-13	(ATP2A3, 13510_7_3)	0.17412636	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-126	(EDN2, 12574_36_3)	0.57510483	[0.53-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-120	(ATP13A1, 13659_36_3)	0.5494977	[0.51-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-12	(ERP44, 6064_4_3)	0.16914177	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-11	(ADH5, 11369_23_3)	0.1559297	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-107	(C2orf66, 5677_15_3)	0.50837743	[0.46-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-10	(STOML2, 6555_58_3)	0.15224975	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-10	(RNF149, 9773_15_3)	0.151566	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	4E-10	(NUP210, 9819_110_3)	0.1526801	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-97	(IL5, 3741_4_3)	0.47897527	[0.44-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-97	(DSC1, 10882_12_3)	0.47635564	[0.43-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-94	(SMAD3, 10363_13_3)	0.46858203	[0.43-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-91	(ESD, 4984_83_1)	0.47228217	[0.43-0.52] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-9	(DLK1, 8380_244_4)	0.14481834	[0.097-0.193] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-9	(CLPB, 11860_3_3)	0.14335302	[0.096-0.191] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-9	(ANGPTL7, 6371_50_3)	0.14465669	[0.097-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-82	(CDH3, 2643_57_2)	0.45064148	[0.41-0.5] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-74	(ACPL2, 6079_59_3)	0.416721	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-73	(SLC22A16, 9969_8_3)	0.4253756	[0.38-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-69	(GCSH, 10956_82_3)	0.42535928	[0.38-0.47] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-65	(KRTDAP, 5739_75_3)	0.39682338	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-64	(SPRN, 13447_42_3)	0.40077943	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-64	(CNTNAP5, 9044_1_3)	0.40323484	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-62	(WDR1, 10723_41_3)	0.395471	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-614	(LRRK2, 10990_21_3)	1.0570763	[1.03-1.09] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-600	(MAPKAPK5, 8382_47_3)	1.0583832	[1.03-1.09] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-59	(CLK2, 11327_56_3)	0.38683483	[0.34-0.43] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-57	(PIK3R1, 8863_3_3)	0.38299823	[0.34-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-55	(LMAN2, 7638_30_3)	0.37032786	[0.32-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-51	(CLMP, 9585_80_3)	0.3576094	[0.31-0.4] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-49	(EHD4, 11421_10_3)	0.34844986	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-48	(RASA1, 5481_16_3)	0.3572324	[0.31-0.4] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-47	(MPP6, 13490_1_3)	0.3406466	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-42	(POFUT2, 6042_52_3)	0.32012346	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-41	(C5orf63, 13378_80_3)	0.3080723	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-40	(ARHGEF7, 13932_45_3)	0.31148577	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-39	(STK17B, 5249_31_3)	0.30129725	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-38	(TP53, 6152_111_3)	0.30629185	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-38	(MPZL2, 9372_157_3)	0.31326362	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(SIRT2, 5030_52_1)	0.30667678	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(PPP3R1, 3657_74_3)	0.29858422	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(PKN1, 12562_1_3)	0.31100762	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(NRSN1, 11654_77_3)	0.30878282	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(LRP1B, 11275_94_3)	0.3097482	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-37	(ADI1, 12457_10_3)	0.30366808	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-35	(LRPPRC, 10696_217_3)	0.2952814	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-349	(ADGRF1, 11243_90_3)	0.8684036	[0.83-0.91] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-33	(IL17RB, 5084_154_3)	0.28797114	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-32	(CD34, 11285_8_3)	0.28448772	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-31	(DDX46, 14216_35_3)	0.28124458	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-28	(TMCC3, 11294_7_3)	0.26041102	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-28	(PTPRH, 11222_62_3)	0.26401398	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-27	(SMR3A, 7838_27_3)	0.25472587	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-27	(GRIA4, 10760_107_3)	0.2561827	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-26	(RNF122, 11160_56_3)	0.251073	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-26	(DEAF1, 6369_82_3)	0.24999107	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-24	(RAB5C, 14287_6_3)	0.2426025	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-24	(IL36A, 10928_7_3)	0.24379447	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-24	(ATP1B1, 13392_13_3)	0.23488148	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-23	(TLR2, 3835_11_2)	0.24417597	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-23	(CDC25B, 12427_8_3)	0.23131844	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-227	(IL31, 10455_196_3)	0.72792053	[0.69-0.77] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-22	(MIOX, 13498_1_3)	0.2288359	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-22	(CDH2, 3797_1_1)	0.2342924	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-21	(NHP2L1, 13602_6_3)	0.23155946	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-20	(KLK14, 3681_87_3)	0.21894227	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-19	(NRAC, 13464_8_3)	0.20892382	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-19	(LIF, 7790_21_3)	0.21695496	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-18	(UCMA, 10977_55_3)	0.20891234	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-18	(SPARC, 14110_200_3)	0.20591927	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-18	(RCN2, 10645_72_3)	0.20605505	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-18	(MAP3K7 TAB1, 5259_2_3)	0.20460188	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-17	(RPSA, 4957_1_2)	0.20363086	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-17	(GDF9, 3067_67_1)	0.19956148	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-17	(CRABP1, 11967_23_3)	0.20767115	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-163	(STIM1, 8916_32_3)	0.6098022	[0.57-0.65] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-16	(GAL3ST1, 8696_15_3)	0.19461164	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-156	(ARSB, 3172_28_2)	0.6109692	[0.57-0.65] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-15	(RLN2, 6621_10_3)	0.1890098	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-15	(GABBR2, 13948_50_3)	0.18836337	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-15	(ADRM1, 9057_19_3)	0.19115072	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-14	(PRPF6, 9581_4_3)	0.1811555	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-14	(PENK, 9076_25_3)	0.17899388	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-14	(PDE11A, 5252_33_3)	0.17672396	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-14	(HNRNPH1, 14309_8_3)	0.18763597	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-13	(TNFRSF10A, 4832_75_2)	0.1758692	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-13	(MAGEA10, 13610_9_3)	0.17355774	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-124	(APBB3, 12784_10_3)	0.5413582	[0.5-0.58] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(STAU2, 12970_35_3)	0.17201932	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(LRP2, 10618_190_3)	0.1665479	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(LRP1, 8601_167_3)	0.17242052	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(HRC, 6584_1_3)	0.17011656	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(AGA, 10435_2_3)	0.16621287	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-12	(ADM, 8518_55_3)	0.16798714	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-111	(MTPAP, 9028_5_3)	0.51095605	[0.47-0.55] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-11	(GRAMD1C, 8842_16_3)	0.16172892	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-11	(ECE1, 8767_44_3)	0.16009079	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-10	(ZPLD1, 5590_11_3)	0.1493215	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	3E-10	(CTNNB1, 8424_269_3)	0.1525141	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(TXNIP, 11682_7_3)	0.14170133	[0.096-0.188] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(SLC26A11, 13502_2_3)	0.14458056	[0.097-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(RNF41, 13411_21_3)	0.14478947	[0.097-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(RBBP9, 10064_12_3)	0.14106281	[0.095-0.187] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(ISOC1, 9816_37_3)	0.14340869	[0.097-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(DHFR, 9823_2_3)	0.14493503	[0.098-0.192] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-9	(CDC34, 12532_28_3)	0.1432419	[0.096-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-69	(MFAP4, 5636_10_3)	0.410273	[0.37-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-69	(HBZ, 6919_3_3)	0.4171167	[0.37-0.46] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-65	(CD34, 9023_9_3)	0.40558797	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-63	(PNPLA2, 9802_27_3)	0.39880303	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-62	(KIR2DL2, 7773_20_3)	0.39416617	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-56	(MAP2K3, 6151_18_3)	0.37607944	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-56	(AIFM1, 9522_3_3)	0.3696825	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-55	(MASP1, 3605_77_4)	0.3583642	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-49	(GPC1, 8697_38_3)	0.34588668	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-48	(VWA2, 7128_9_3)	0.3508739	[0.3-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-48	(BMP6, 3736_60_3)	0.34171686	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-47	(RNF8, 14663_44_3)	0.3428613	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-47	(GALNT2, 5764_4_3)	0.33902085	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-45	(ARFIP1, 13488_3_3)	0.32908732	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-45	(ACP2, 9237_54_3)	0.34105816	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-44	(DYRK3, 4359_87_1)	0.3251939	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-43	(TRABD, 11262_39_3)	0.33146453	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-42	(RAB18, 12945_33_3)	0.32085904	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-41	(TWF1, 12871_10_3)	0.32147676	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-395	(MBD1, 14294_61_3)	0.8891719	[0.85-0.92] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-38	(AIF1, 2849_49_1)	0.3088753	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-36	(RAD51L3, 12554_10_3)	0.2986774	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-36	(DNAJB9, 11214_40_3)	0.3033763	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-35	(ROR1, 13400_13_3)	0.29244557	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-35	(NDC80, 12730_3_3)	0.2952397	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-35	(CD96, 9735_44_3)	0.2921903	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-342	(HS3ST5, 10731_10_3)	0.85441273	[0.82-0.89] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-34	(GCK, 12960_9_3)	0.2927599	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-33	(TNNT2, 5315_22_3)	0.2804886	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-33	(TAGLN2, 9201_13_3)	0.29283372	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-32	(ICOSLG, 5061_27_3)	0.2861357	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-32	(FCRL2, 8085_10_3)	0.28782606	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-32	(CDC42BPB, 3629_60_4)	0.27682826	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-31	(PCYOX1L, 5599_88_3)	0.28062528	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-31	(DNAJC4, 8653_132_3)	0.27718773	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-31	(CLEC12B, 10837_131_3)	0.2783888	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-309	(AMH, 4923_79_1)	0.82963973	[0.79-0.87] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-30	(SCGN, 10894_25_3)	0.27178654	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-29	(CDH15, 5410_53_3)	0.26324138	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-28	(USP21, 12681_63_3)	0.2593855	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-27	(SPOCK3, 9906_21_3)	0.2630128	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-26	(SMPDL3A, 4771_10_3)	0.24992424	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-26	(IFNA2, 3497_13_2)	0.25764513	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-26	(IBSP, 14023_84_3)	0.2588566	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-26	(GDA, 12667_2_3)	0.25303534	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-26	(CLCA2, 8950_4_3)	0.24642962	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-252	(ELL2, 11494_4_3)	0.7438248	[0.7-0.78] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-25	(PCDH10, 8780_2_3)	0.24954523	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-25	(IL22, 2778_10_2)	0.2471131	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-244	(CPN2, 6415_90_3)	0.7454983	[0.71-0.79] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-24	(ZNF10, 11567_23_3)	0.23816119	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-24	(TYMSOS, 8263_64_3)	0.24509907	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-24	(PMEL, 6472_40_3)	0.23777668	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-24	(ETHE1, 3847_56_2)	0.24611312	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-23	(THSD1, 5621_64_3)	0.24313779	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-22	(ICT1, 6380_23_3)	0.23451485	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-22	(DCP1A, 14008_22_3)	0.23379195	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-20	(UBE2D4, 13475_10_3)	0.22173324	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-20	(EPHB2, 5077_28_3)	0.22235604	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-20	(ALDH1A3, 9835_16_3)	0.223848	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-19	(M6PR, 10491_21_3)	0.22024608	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-19	(JAKMIP3, 9068_17_3)	0.2135282	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-19	(ARPC3, 13573_5_3)	0.21601893	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-18	(UPK3BL, 6633_43_3)	0.2115974	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-18	(IL36G, 9117_4_3)	0.21457195	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-18	(ARFGAP1, 11556_19_3)	0.20835838	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(RABEPK, 13599_15_3)	0.2038061	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(PVRIG, 6464_40_3)	0.20170386	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(NRAS, 10531_18_3)	0.20698412	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(MYRF, 8843_34_3)	0.19963987	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(LMCD1, 9530_6_3)	0.20766267	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(KLHL13, 12463_7_3)	0.20360911	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-17	(DEFB121, 5765_53_3)	0.20695734	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-16	(ZNF275, 9609_25_3)	0.19966891	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-16	(FKBP2, 9339_204_3)	0.19649988	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-16	(CD27, 5412_53_3)	0.19670832	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-151	(DYNAP, 10692_48_3)	0.59894645	[0.56-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-15	(MGAT4A, 9392_43_3)	0.18743181	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-15	(CTSB, 3061_61_2)	0.19122362	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-144	(RNF13, 8087_250_3)	0.6023523	[0.56-0.65] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(MDM4, 13229_20_3)	0.18456237	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(MDM2, 13228_75_3)	0.18624668	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(MARCO, 9003_99_3)	0.17947777	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(EVPL, 14019_73_3)	0.18780605	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(EPHA5, 14089_41_3)	0.18348858	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-14	(ELK1, 10006_25_3)	0.18750049	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-139	(GCNT4, 10842_7_3)	0.5746574	[0.53-0.62] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-137	(SEMA3A, 3222_11_2)	0.58550924	[0.54-0.63] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-13	(SLC14A2, 12818_159_3)	0.1787515	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-13	(GRAP, 12820_1_3)	0.17963459	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-128	(TCP11, 8334_65_3)	0.5694215	[0.53-0.61] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-12	(TGM1, 11242_33_3)	0.17082499	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-12	(SLC6A14, 13053_6_3)	0.16203721	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-12	(KCNA10, 13042_7_3)	0.16503917	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-12	(CSH1 CSH2, 13103_125_3)	0.16929223	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-118	(NEURL4, 13468_5_3)	0.53424096	[0.49-0.58] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-116	(SPACA3, 8076_4_3)	0.53612095	[0.49-0.58] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-114	(NMRAL1, 13988_67_3)	0.5206461	[0.48-0.56] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-112	(RFFL, 14186_13_3)	0.5258953	[0.48-0.57] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(WFDC3, 6384_19_3)	0.16123547	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(TESC, 12831_21_3)	0.16117315	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(SYTL4, 11563_51_3)	0.15851846	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(PFN2, 13054_87_3)	0.16099611	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(NCOA2, 14045_12_3)	0.16684549	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(GPD1L, 12420_10_3)	0.15894005	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(ELL, 11459_81_3)	0.16552706	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(CD58, 10938_13_3)	0.16142413	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-11	(ANP32B, 4194_26_3)	0.1634829	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-103	(SLC3A1, 9000_177_3)	0.5100096	[0.47-0.55] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(TNFSF18, 2708_54_2)	0.15378097	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(TNFRSF11B, 8304_50_3)	0.14126886	[0.098-0.185] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(SELL, 4831_4_2)	0.1537235	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(OOSP2, 7106_37_3)	0.1518716	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(HHLA2, 14132_21_3)	0.15080288	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(GOSR2, 10426_21_3)	0.15557611	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(EFNA2, 10801_11_3)	0.14938372	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(CASQ1, 11263_57_3)	0.15618542	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(CAMK1D, 3418_12_2)	0.14750382	[0.1-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	2E-10	(ASTL, 7993_23_3)	0.15571474	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-95	(COTL1, 4905_63_1)	0.4883702	[0.44-0.53] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-91	(SH2D1A, 4567_82_2)	0.47567043	[0.43-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-9	(SCO1, 7853_19_3)	0.14515208	[0.099-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-9	(PLIN3, 14687_6_3)	0.1519629	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-9	(MCF2L, 13934_3_3)	0.14814146	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-9	(CD74, 8748_45_3)	0.14858352	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-9	(APBB3, 13589_10_3)	0.14531097	[0.099-0.192] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-859	(TMPRSS6, 11239_49_3)	1.168157	[1.14-1.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-84	(C1QTNF1, 6304_8_3)	0.455971	[0.41-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-8	(SLITRK1, 3643_90_2)	0.13375087	[0.088-0.179] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-8	(PDIA4, 7146_16_3)	0.13759267	[0.091-0.185] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-8	(MUC1, 10623_19_3)	0.13692348	[0.09-0.184] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-8	(HTR2A, 13556_28_3)	0.13882285	[0.091-0.186] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-8	(ANGPTL1, 9092_33_3)	0.13655905	[0.09-0.183] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-78	(ROCK2, 13654_1_3)	0.44311172	[0.4-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-76	(CDH12, 10701_30_3)	0.42635918	[0.38-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-722	(GEM, 12817_1_3)	1.114209	[1.09-1.14] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-66	(CDH6, 3591_51_3)	0.39354128	[0.35-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-59	(KLK15, 6491_59_3)	0.3784868	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-55	(CREBBP, 13614_6_3)	0.37284428	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-53	(MAN2B2, 9251_28_3)	0.37211603	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-51	(CNGA2, 12872_35_3)	0.36413103	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-50	(PFKFB3, 12456_5_3)	0.357909	[0.31-0.4] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-48	(OCIAD1, 3635_76_4)	0.34160572	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-48	(LDOC1, 8378_3_4)	0.34487286	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-47	(SLC5A5, 12826_5_3)	0.34573644	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-463	(PCDHGC3, 7859_21_3)	0.9495574	[0.92-0.98] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-45	(SH2D3C, 12704_26_3)	0.33752748	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-422	(CSMD1, 9598_23_3)	0.90764076	[0.87-0.94] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-42	(LY6G6C, 6256_9_3)	0.3258508	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-42	(DNAJB14, 8037_53_3)	0.32262307	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-41	(UGT2A1, 8907_11_3)	0.3239139	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-41	(STK16, 3471_49_1)	0.3167241	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-41	(NCMAP, 14614_41_3)	0.3257726	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-39	(NHLRC3, 9087_8_3)	0.3140835	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-39	(NAT1, 12632_14_3)	0.31363297	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-39	(CMPK1, 4786_58_3)	0.3057087	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-38	(METTL1, 12514_16_3)	0.30978623	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-36	(EQTN, 11162_37_3)	0.30786422	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-36	(DEF6, 14090_23_3)	0.30314386	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-35	(HSD17B1, 4708_3_2)	0.2871113	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-35	(C1QBP, 4967_1_1)	0.29323998	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-34	(TAGLN2, 11636_33_3)	0.29670903	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-33	(SFRP2, 7751_121_3)	0.28411964	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-33	(NPIPB3, 9954_2_3)	0.29006606	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-33	(ENAH, 9757_29_3)	0.28716493	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-323	(TOR1AIP1, 9039_47_3)	0.84799707	[0.81-0.89] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-32	(HINT2, 5612_16_3)	0.28589547	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-31	(PRSS27, 3624_3_4)	0.2742788	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-31	(PRLR, 5114_65_3)	0.2715544	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-31	(CCNB1IP1, 9728_4_3)	0.27710444	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-29	(PKLR, 11203_97_3)	0.27143216	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-29	(LGMN, 3622_33_4)	0.26870412	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-29	(HCAR2, 13495_48_3)	0.27202255	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-28	(UBE3A, 11226_16_3)	0.26578385	[0.22-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-26	(EDDM3A, 9536_16_3)	0.25825718	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-26	(CD63, 9190_7_3)	0.25232866	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-26	(C7, 2888_49_2)	0.2561605	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-25	(HSPA6, 13672_3_3)	0.2436718	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-25	(EFNB1, 5746_37_3)	0.2517874	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-24	(PSMD9, 13931_22_3)	0.2491358	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-24	(MUC1, 9176_3_3)	0.2432926	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-23	(HERC5, 12934_1_3)	0.23573084	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-22	(mtb12, 15007_48_3)	0.23596737	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-217	(TMEM87B, 13485_20_3)	0.7202569	[0.68-0.76] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-21	(TNFRSF1B, 3152_57_1)	0.22854814	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-20	(LRPAP1, 3640_14_3)	0.22652544	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-192	(ASCC1, 10647_18_3)	0.6793024	[0.64-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-19	(SPINK5, 8028_22_3)	0.21805179	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-19	(KIAA1024, 9075_121_3)	0.21875893	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-19	(ERO1L, 7060_2_3)	0.21613261	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-19	(AHSP, 9025_5_3)	0.21949887	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-184	(ARHGEF2, 12848_9_3)	0.6646149	[0.62-0.71] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-18	(TRIB2, 12363_70_3)	0.21491942	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-18	(PUF60, 10575_31_3)	0.21056743	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-18	(NTRK1, 3477_63_2)	0.20977427	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-18	(BACH1, 12451_62_3)	0.21149856	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-18	(ADAMTS6, 6441_62_3)	0.21580781	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-17	(UTS2, 6020_52_3)	0.20458661	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-17	(NXPH3, 6054_6_3)	0.20615557	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-17	(CHIT1, 3600_2_3)	0.20911455	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-16	(IFIT2, 9853_3_3)	0.19581239	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-16	(FTH1 FTL, 3031_66_1)	0.1965838	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-16	(AHSA1, 11633_89_3)	0.19904934	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-153	(COPS2, 14029_42_3)	0.6039602	[0.56-0.65] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-15	(FOXRED1, 8017_23_3)	0.1882401	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-147	(NDUFB4, 10677_9_3)	0.5892143	[0.55-0.63] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-141	(NR1H2, 9016_12_3)	0.5813269	[0.54-0.62] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-14	(SEPT10, 12690_33_3)	0.1881402	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-13	(TMEM132B, 8890_9_3)	0.17790718	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-13	(RYK, 5583_62_3)	0.18410216	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-13	(CD300E, 10798_4_3)	0.17589323	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-120	(FUT9, 6991_24_3)	0.52907366	[0.49-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(MAPK12, 5005_4_1)	0.17155778	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(FST, 4132_27_2)	0.17247443	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(FLNA, 11108_16_3)	0.17212297	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(FGF10, 2441_2_4)	0.17091613	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(ECI2, 12859_33_3)	0.17369854	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(CSTL1, 6368_9_3)	0.1704384	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(CSF3, 8952_65_3)	0.17101498	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-12	(AURKB, 3346_72_2)	0.1721156	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-117	(CHKB, 13117_232_3)	0.5313025	[0.49-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-116	(MMP13, 4925_54_2)	0.5428703	[0.5-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-11	(SERPINA12, 6551_94_3)	0.165394	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-11	(HMGB3, 12775_6_3)	0.15972681	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-11	(ADSL, 5023_23_1)	0.1637903	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(YBX2, 6372_7_3)	0.14872728	[0.1-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(VTN, 8280_238_3)	0.15622008	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(TMEM52B, 9778_45_3)	0.15889372	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(NDNF, 6604_59_3)	0.15405168	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(JARID2, 12623_84_3)	0.15609291	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(FARS2, 13941_82_3)	0.15371408	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(CLIC1, 5013_2_1)	0.15455325	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(BCAR3, 12634_79_3)	0.15546706	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(ARRB1, 12643_4_3)	0.15531787	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.51203125	1E-10	(ACE2, 2805_6_2)	0.1529615	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26694860	26694861	rs704	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs704-?	NR	4E-16		0.0167692	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-82	(Interleukin-31, IL31.10455.196.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-64	(Metallothionein-1F, MT1F.10416.79.3)	0.4	[0.36-0.44] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-62	(Probable G-protein coupled receptor 135, GPR135.11465.4.3)	0.39	[0.35-0.43] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-27	(Ras GTPase-activating protein 1, RASA1.5481.16.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-24	(ERO1-like protein alpha, ERO1L.7060.2.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-16	(RAB6-interacting golgin, GORAB.7247.1.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	9E-15	(Serpin A12, SERPINA12.6551.94.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-770	(Vitronectin, VTN.13125.45.3)	1.02	[0.98-1.06] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-72	(Pro-FMRFamide-related neuropeptide FF, NPFF.5617.41.3)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-51	(2-phosphoxylose phosphatase 1, ACPL2.6079.59.3)	0.36	[0.32-0.4] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-50	(Semaphorin-3A, SEMA3A.3222.11.2)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-29	(Dipeptidyl peptidase 2, DPP7.3608.12.5)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-28	(Glycerol-3-phosphate dehydrogenase 1-like protein, GPD1L.12420.10.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-18	(GRAM domain-containing protein 1C, GRAMD1C.8842.16.3)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-16	(Calcipressin-1, RCAN1.13465.5.3)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-15	(Heparan-sulfate 6-O-sulfotransferase 1, HS6ST1.5465.32.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	8E-13	(Cysteine-rich hydrophobic domain-containing protein 2, CHIC2.10914.4.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-67	(Dual specificity protein kinase CLK2, CLK2.11327.56.3)	0.41	[0.37-0.45] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-391	(Growth/differentiation factor 5, GDF5.2752.62.2)	0.84	[0.8-0.88] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-38	(Nuclear pore complex-interacting protein family member B3, NPIPB3.9954.2.3)	0.31	[0.27-0.35] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-33	(NKG2-E type II integral membrane protein, KLRC3.11571.75.3)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-33	(Interleukin-5, IL5.3741.4.3)	0.29	[0.25-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-30	(Synaptotagmin-like protein 4, SYTL4.11563.51.3)	0.28	[0.24-0.32] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-29	(Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, ST6GALNAC1.7867.154.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-25	(Protein RIC-3, RIC3.11228.37.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-20	(Insulin growth factor-like family member 3, IGFL3.6961.14.3)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-18	(Growth factor receptor-bound protein 7, GRB7.11281.6.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	7E-13	(Protocadherin-10, PCDH10.8780.2.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-497	(GTP-binding protein GEM, GEM.12817.1.3)	0.91	[0.87-0.95] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-49	(Poly(U)-binding-splicing factor PUF60, PUF60.10575.31.3)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-47	(Uncharacterized protein C2orf66, C2orf66.5677.15.3)	0.34	[0.3-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-26	(Regulator of G-protein signaling 19, RGS19.12713.365.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-181	(MAP kinase-activated protein kinase 5, MAPKAPK5.8382.47.3)	0.63	[0.59-0.67] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-16	(Mesothelin, MSLN.3893.55.2)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	6E-13	(Tryptase gamma, TPSG1.14103.12.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-80	(Mucin-1, MUC1.9176.3.3)	0.44	[0.4-0.48] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-71	(Transcription factor RelB, RELB.11464.9.3)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-60	(Sperm acrosome membrane-associated protein 3, SPACA3.8076.4.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-44	(Endothelin-2, EDN2.12574.36.3)	0.33	[0.29-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-24	(E3 ubiquitin-protein ligase RNF128, RNF128.6510.56.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	5E-16	(Isthmin-1, ISM1.8355.80.3)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-61	(Tyrosine-protein kinase JAK2, JAK2.4998.50.2)	0.39	[0.35-0.43] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-56	(SLAM family member 7, SLAMF7.7882.31.3)	0.38	[0.34-0.42] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-54	(Torsin-1A-interacting protein 1, TOR1AIP1.9039.47.3)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-34	(Calcium/calmodulin-dependent protein kinase type 1D, CAMK1D.3418.12.2)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-29	(Rho GTPase-activating protein 30, ARHGAP30.12807.89.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-25	(Hematopoietic progenitor cell antigen CD34, CD34.11285.8.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-24	(Nucleosome assembly protein 1-like 2, NAP1L2.13529.39.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-180	(NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4, NDUFB4.10677.9.3)	0.63	[0.59-0.67] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	4E-13	(Dickkopf-like protein 1, DKKL1.3644.5.4)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-64	(MAX gene-associated protein, MGA.11587.5.3)	0.4	[0.36-0.44] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-47	(SH2 domain-containing protein 1A, SH2D1A.4567.82.2)	0.35	[0.31-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-45	(Oxysterols receptor LXR-beta, NR1H2.9016.12.3)	0.34	[0.3-0.38] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-39	(E3 ubiquitin-protein ligase RNF8, RNF8.14663.44.3)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-36	(Leucine-rich repeat serine/threonine-protein kinase 2, LRRK2.10990.21.3)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-34	(Protocadherin beta-4, PCDHB4.10522.167.3)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-32	(Proteasome subunit alpha type-1, PSMA1.7880.9.3)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-23	(Choline/ethanolamine kinase, CHKB.13117.232.3)	0.24	[0.2-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-21	(Growth factor receptor-bound protein 14, GRB14.13628.58.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-18	(Neurensin-1, NRSN1.11654.77.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-16	(Lysozyme-like protein 2, LYZL2.6377.54.3)	0.2	[0.16-0.24] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-15	(Opalin, OPALIN.7736.28.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-14	(Testican-3, SPOCK3.9906.21.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-14	(Chitinase-3-like protein 2, CHI3L2.9383.24.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-13	(Prolactin receptor, PRLR.5114.65.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	3E-12	(Gastrin-releasing peptide, GRP.8400.74.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-88	(Adhesion G-protein coupled receptor F1, ADGRF1.11243.90.3)	0.46	[0.42-0.5] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-85	([Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial, PDK1.5227.60.3)	0.46	[0.42-0.5] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-836	(Inactive peptidyl-prolyl cis-trans isomerase FKBP6, FKBP6.12529.32.3)	1.04	[1-1.08] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-56	(Kelch-like protein 13, KLHL13.12463.7.3)	0.38	[0.34-0.42] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-49	(Signal peptidase complex catalytic subunit SEC11C, SEC11C.10658.28.3)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-44	(Interleukin-36 alpha, IL36A.10928.7.3)	0.34	[0.3-0.38] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-42	(DnaJ homolog subfamily B member 9, DNAJB9.11214.40.3)	0.33	[0.29-0.37] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-38	(MAGUK p55 subfamily member 6, MPP6.13490.1.3)	0.31	[0.27-0.35] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-37	(Syntaxin-1A, STX1A.3766.51.4)	0.31	[0.27-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-26	(Guanylate-binding protein 6, GBP6.7818.101.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-23	(WD repeat-containing protein 1, WDR1.10723.41.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-22	(Tumor necrosis factor receptor superfamily member 16, NGFR.8374.5.3)	0.24	[0.2-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-22	(Rab9 effector protein with kelch motifs, RABEPK.13599.15.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-21	(Ribonucleoside-diphosphate reductase subunit M2 B, RRM2B.8854.59.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-20	(tRNA (guanine-N(7)-)-methyltransferase, METTL1.12514.16.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-20	(Protocadherin gamma-C5, PCDHGC5.7983.1.3)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-19	(Probable serine carboxypeptidase CPVL, CPVL.8891.7.3)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-17	(Rhophilin-2, RHPN2.11439.88.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-17	(M-phase inducer phosphatase 2, CDC25B.12427.8.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-15	(Erlin-1, ERLIN1.8776.10.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-14	(Heat shock 70 kDa protein 6, HSPA6.13672.3.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-13	(Cortexin-3, CTXN3.10467.58.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-13	(3-hydroxyanthranilate 3,4-dioxygenase, HAAO.5861.78.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-12	(Peptidyl-prolyl cis-trans isomerase-like 2, PPIL2.14314.6.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-12	(Cellular tumor antigen p53, TP53.6152.111.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-12	(Aurora kinase B, AURKB.3346.72.2)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	2E-101	(Solute carrier family 35 member G2, SLC35G2.13501.10.3)	0.49	[0.45-0.53] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-88	(Sialic acid-binding Ig-like lectin 12, SIGLEC12.8352.26.3)	0.47	[0.43-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-66	(Killer cell immunoglobulin-like receptor 2DL2, KIR2DL2.7773.20.3)	0.41	[0.37-0.45] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-59	(Inositol polyphosphate 5-phosphatase OCRL-1, OCRL.10011.65.3)	0.39	[0.35-0.43] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-55	(E3 ubiquitin-protein ligase RNF13, RNF13.8087.250.3)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-54	(Heat shock 70 kDa protein 1-like, HSPA1L.12041.33.3)	0.37	[0.33-0.41] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-37	(Ephrin-B3, EFNB3.7785.1.3)	0.31	[0.27-0.35] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-33	(Receptor-type tyrosine-protein phosphatase H, PTPRH.11222.62.3)	0.29	[0.25-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-32	(C-type lectin domain family 2 member D, CLEC2D.7054.87.3)	0.29	[0.25-0.33] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-29	(Beta-defensin 105, DEFB105A.10962.46.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-28	(GRAM domain-containing protein 1C, GRAMD1C.8336.267.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-26	(Melanoma-associated antigen 10, MAGEA10.13610.9.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-26	(Golgi SNAP receptor complex member 1, GOSR1.7805.52.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-24	(Retinaldehyde-binding protein 1, RLBP1.12936.38.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-23	(Poly(A) RNA polymerase, mitochondrial, MTPAP.9028.5.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-194	(rRNA methyltransferase 3, mitochondrial, RNMTL1.9584.105.3)	0.65	[0.61-0.69] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-191	(COP9 signalosome complex subunit 2, COPS2.14029.42.3)	0.65	[0.61-0.69] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-18	(Neutrophil collagenase, MMP8.2954.56.2)	0.22	[0.18-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-18	(Intersectin-1, ITSN1.14070.56.3)	0.22	[0.18-0.26] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-164	(Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2, ASAP2.13518.5.3)	0.61	[0.57-0.65] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-1442	(MICOS complex subunit MIC10, MINOS1.7956.11.3)	1.16	[1.14-1.18] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-126	(Alpha-(1,3)-fucosyltransferase 9, FUT9.6991.24.3)	0.55	[0.51-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-11	(Glutaredoxin-like protein C5orf63, C5orf63.13378.80.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	VTN	rs704-A	0.467	1E-11	(Cytohesin-2, CYTH2.12533.135.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26694860	26694861	rs704	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q11.2		rs704-G	NR	8E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
788	chr17	26694860	26694861	rs704	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q11.2		rs704-G	NR	2E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
788	chr17	26694860	26694861	rs704	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q11.2	NR	rs704-G	NR	4E-8		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
788	chr17	26694860	26694861	rs704	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17q11.2	NR	rs704-A	NR	5E-29		0.0208422	[0.017-0.024] unit increase	Illumina [242289]	N
788	chr17	26694860	26694861	rs704	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	17q11.2	NR	rs704-A	0.47	1E-11		0.021	unit increase	Illumina [242289]	N
788	chr17	26694860	26694861	rs704	25080503	Kwan JS	2014-07-30	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies two loci associated with circulating osteoprotegerin levels.	Osteoprotegerin levels	4,158 European ancestry males, 531 South Tyrol males, 4,253 European ancestry females, 692 South Tyrol females, 702 Han Chinese ancestry females	NA	17q11.2	MIR4723, VTN, IFT20, SARM1, TNFAIP1, SLC46A1, TMEM199, SEBOX, FLJ40504, POLDIP2, TMEM97	rs704-A	0.494	1E-9	(Sex-combined)	0.03	[0.020-0.040] unit decrease	Affymetrix, Illumina [up to 2544063] (imputed)	N
788	chr17	26695831	26695832	rs2071379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	17q11.2		rs2071379-A	0.403742	4E-10		0.0246442	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
788	chr17	26695831	26695832	rs2071379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	17q11.2		rs2071379-A	0.403742	4E-11		0.0262215	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
788	chr17	26695831	26695832	rs2071379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	17q11.2		rs2071379-A	0.403742	6E-12		0.0269957	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
788	chr17	26695831	26695832	rs2071379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	17q11.2		rs2071379-A	0.403758	4E-8		0.0204958	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
788	chr17	26695831	26695832	rs2071379	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEL1L2	5,357 Icelandic ancestry individuals	NA	17q11.2		rs2071379-A	0.3828	6E-15		0.13929	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26695831	26695832	rs2071379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q11.2	TMEM199	rs2071379-A	0.404861	4E-12		0.0134628	[0.0097-0.0173] unit increase	Affymetrix [NR] (imputed)	N
788	chr17	26695831	26695832	rs2071379	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q11.2	TMEM199	rs2071379-A	0.40476	1E-26		0.0214008	[0.017-0.025] unit increase	Affymetrix [NR] (imputed)	N
788	chr17	26701138	26701138	rs11444944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q11.2		rs11444944-TA	NR	2E-11		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-9	(TEX29, 13500_9_3)	0.13599835	[0.09-0.182] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-9	(DDR1, 14704_10_3)	0.1404657	[0.093-0.188] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-9	(CALCOCO2, 12534_10_3)	0.13862127	[0.091-0.186] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-82	(IL5, 3741_4_3)	0.44188207	[0.4-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-65	(ACPL2, 6079_59_3)	0.39075693	[0.35-0.43] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-52	(TLR4 LY96, 3647_49_4)	0.3551256	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-47	(LMAN2, 7638_30_3)	0.34115112	[0.3-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-36	(GRB14, 13628_58_3)	0.29657245	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-34	(ABL2, 5261_13_3)	0.28365433	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-33	(NCMAP, 14614_41_3)	0.28870648	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-26	(PTPRH, 11222_62_3)	0.25207952	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-25	(SPOCK3, 9906_21_3)	0.24970123	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-25	(RELB, 11464_9_3)	0.24931523	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-24	(CADM3, 3630_27_4)	0.23577511	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-22	(RBM28, 11927_3_3)	0.23436427	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-22	(PPIB, 4718_5_2)	0.22574943	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-21	(VSTM5, 8271_24_3)	0.22575997	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-21	(CDC25B, 12427_8_3)	0.21867977	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-17	(MSTN, 14583_49_3)	0.19462928	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-154	(NUDC, 8887_21_3)	0.59262276	[0.55-0.63] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-15	(EZR, 9753_17_3)	0.18604206	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-142	(STIM1, 8916_32_3)	0.57317305	[0.53-0.62] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-13	(CD27, 5412_53_3)	0.17209531	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-12	(PDE3A, 5254_69_3)	0.16523391	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	9E-12	(ITSN1, 14070_56_3)	0.1669262	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-92	(CETN2, 13078_3_3)	0.48041826	[0.44-0.53] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-91	(SLC3A1, 9000_177_3)	0.48032898	[0.44-0.53] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-9	(DYNLRB1, 3845_51_2)	0.1403647	[0.093-0.188] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-670	(ASAP2, 13518_5_3)	1.0914682	[1.06-1.12] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-44	(EHD4, 11421_10_3)	0.32921657	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-36	(DEF6, 14090_23_3)	0.29990605	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-35	(WNT3A, 13236_25_3)	0.28844795	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-33	(SEC11C, 10658_28_3)	0.29573977	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-322	(MBD1, 14294_61_3)	0.82304144	[0.79-0.86] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-31	(LRPPRC, 10696_217_3)	0.27644733	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-31	(FBXL4, 9951_36_3)	0.27592665	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-29	(RIC3, 11228_37_3)	0.27425626	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-26	(PRLR, 5114_65_3)	0.24480082	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-25	(GRIA4, 10760_107_3)	0.24437861	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-22	(NHP2L1, 13602_6_3)	0.23498175	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-21	(YWHAB,YWHAE,YWHAG,YWHAH,YWHAQ,YWHAZ,SFN, 4707_50_2)	0.2301661	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-21	(ACBD7, 13563_259_3)	0.22209112	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-176	(ASCC1, 10647_18_3)	0.6538863	[0.61-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-15	(AHSA1, 11633_89_3)	0.18779962	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-130	(SNRPF, 5494_52_3)	0.5668196	[0.52-0.61] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-13	(FTH1 FTL, 3031_66_1)	0.17080316	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-121	(IL13RA1, 2633_52_2)	0.55271393	[0.51-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-12	(TSNARE1, 7069_9_4)	0.16496836	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-11	(STAT6, 10372_18_3)	0.15804884	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	8E-11	(LRTM2, 8906_60_3)	0.15410168	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-9	(JARID2, 12623_84_3)	0.14017323	[0.093-0.187] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-9	(GOSR2, 10426_21_3)	0.14182949	[0.094-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-9	(FARS2, 13941_82_3)	0.1385604	[0.092-0.185] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-57	(KRTDAP, 5739_75_3)	0.37136495	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-50	(GRP, 8400_74_3)	0.36104527	[0.31-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-43	(MFF, 11157_35_3)	0.32689	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-36	(ACP2, 9237_54_3)	0.30325857	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-344	(CSMD1, 9598_23_3)	0.8414178	[0.8-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-33	(NPIPB3, 9954_2_3)	0.28730026	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-30	(CLEC12B, 10837_131_3)	0.27123463	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-30	(CDCP1, 8589_13_3)	0.26506743	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-29	(CCNB1IP1, 9728_4_3)	0.26480925	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-27	(ADCYAP1, 4594_22_2)	0.25576875	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-26	(LGMN, 3622_33_4)	0.25042555	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-24	(PCDH10, 8780_2_3)	0.24221748	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-23	(NQO2, 9754_33_3)	0.24260789	[0.19-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-22	(HSPA6, 13672_3_3)	0.2244633	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-21	(TYMSOS, 8263_64_3)	0.22550425	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-21	(SF1, 12777_11_3)	0.22405393	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-205	(ELL2, 11494_4_3)	0.6817943	[0.64-0.72] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-20	(RUFY1, 11425_31_3)	0.2142777	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-192	(FAM171A2, 13479_8_3)	0.66188973	[0.62-0.7] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-17	(UCMA, 10977_55_3)	0.20044973	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-17	(ERO1L, 7060_2_3)	0.1991901	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-17	(ARPC3, 13573_5_3)	0.1999579	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-16	(ADAMTS6, 6441_62_3)	0.1984378	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-14	(KIF22, 12734_112_3)	0.17973731	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-128	(RNF13, 8087_250_3)	0.57089216	[0.53-0.62] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-122	(PDK1, 5227_60_3)	0.5494491	[0.51-0.59] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-12	(TNFRSF10A, 4832_75_2)	0.16561352	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-12	(ADH5, 11369_23_3)	0.16201212	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-11	(PLCG1, 4563_61_2)	0.15931815	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-11	(MAGEA10, 13610_9_3)	0.15573905	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-11	(Ccl22, 7664_173_3)	0.16143005	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-11	(ASIP, 5676_54_3)	0.16024713	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-10	(RRAS2, 12361_102_3)	0.15124291	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	7E-10	(DCTN2, 5879_51_3)	0.14695363	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-9	(STOML2, 6555_58_3)	0.14133136	[0.094-0.189] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-9	(PLIN3, 14687_6_3)	0.14468673	[0.096-0.193] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-84	(MGA, 11587_5_3)	0.45627576	[0.41-0.5] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-80	(SMAD3, 10363_13_3)	0.43396926	[0.39-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-593	(NPFF, 5617_41_3)	1.0580277	[1.03-1.09] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-41	(LY6G6C, 6256_9_3)	0.31968424	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-40	(ARFIP1, 13488_3_3)	0.30918956	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-39	(TRABD, 11262_39_3)	0.3142145	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-38	(MPP6, 13490_1_3)	0.30552885	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-35	(NAT1, 12632_14_3)	0.29481038	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-32	(NDC80, 12730_3_3)	0.28083074	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-32	(DNAJB9, 11214_40_3)	0.28453648	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-31	(KIF1C, 9899_28_3)	0.2752744	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-265	(GSTP1, 13576_15_3)	0.7830271	[0.74-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-25	(GDA, 12667_2_3)	0.24570245	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-25	(CD47, 6653_58_3)	0.24880685	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-23	(IFNA2, 3497_13_2)	0.24002719	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-23	(EFNB1, 5746_37_3)	0.23795438	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-220	(PPA1, 5021_13_1)	0.7132733	[0.67-0.75] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-21	(MUC1, 9176_3_3)	0.22334953	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-20	(ADCYAP1, 4593_11_1)	0.21735492	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-19	(M6PR, 10491_21_3)	0.2176196	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-18	(NTRK1, 3477_63_2)	0.20556568	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-18	(GHRL, 6518_85_3)	0.20565717	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-17	(ENTPD6, 8932_1_3)	0.20130204	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-17	(APOA5, 12908_15_3)	0.20237845	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-16	(RABEPK, 13599_15_3)	0.19426373	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-16	(MYRF, 8843_34_3)	0.1908185	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-16	(ARFGAP1, 11556_19_3)	0.19348407	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-15	(BRF1, 5384_67_3)	0.18395405	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-13	(FLNA, 11124_9_3)	0.17163397	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-13	(CHIT1, 3600_2_3)	0.17709062	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-12	(RLN2, 6621_10_3)	0.16576745	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-12	(NAPB, 12655_30_3)	0.16351947	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-12	(CD300E, 10798_4_3)	0.16395484	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-11	(PRPF6, 9581_4_3)	0.15632915	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-11	(ECE1, 8767_44_3)	0.15757073	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-11	(CLCNKB, 13683_18_3)	0.15751661	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-11	(CD58, 10938_13_3)	0.15848279	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-10	(ECI2, 12859_33_3)	0.15117736	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-10	(C8A C8B C8G, 2429_27_4)	0.14650556	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	6E-10	(BCAR3, 12634_79_3)	0.15022098	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-97	(CHKB, 13117_232_3)	0.48617312	[0.44-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-93	(C2orf66, 5677_15_3)	0.47630402	[0.43-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-9	(SCO1, 7853_19_3)	0.13961183	[0.093-0.186] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-9	(MUC1, 10623_19_3)	0.14021836	[0.093-0.187] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-84	(DSC1, 10882_12_3)	0.44503948	[0.4-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-56	(DDX23, 13946_8_3)	0.3739053	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-55	(KIR2DL2, 7773_20_3)	0.37145984	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-55	(CLK2, 11327_56_3)	0.37366742	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-54	(STX1A, 3766_51_4)	0.37123418	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-48	(GPR135, 11465_4_3)	0.34729657	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-47	(MAN2B2, 9251_28_3)	0.349314	[0.3-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-46	(CREBBP, 13614_6_3)	0.33977643	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-43	(RNF8, 14663_44_3)	0.32695088	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-43	(GALNT2, 5764_4_3)	0.32340872	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-36	(UGT2A1, 8907_11_3)	0.3018398	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-36	(LOC652493, 6561_77_3)	0.30016428	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-34	(PCDHB14, 10715_5_3)	0.28908464	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-33	(CMPK1, 4786_58_3)	0.27926558	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-30	(PPP3R1, 3657_74_3)	0.26760375	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-29	(TNNT2, 5315_22_3)	0.26116347	[0.22-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-287	(HS3ST5, 10731_10_3)	0.7979704	[0.76-0.84] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-28	(DCUN1D5, 8760_10_3)	0.26348302	[0.22-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-27	(ICOSLG, 5061_27_3)	0.26066786	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-25	(ZNRF3, 13428_52_3)	0.2492781	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-24	(FOLR3, 5624_66_3)	0.24331169	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-23	(SMR3A, 7838_27_3)	0.23384543	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-21	(TNFRSF1B, 3152_57_1)	0.22527644	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-21	(ATP1B1, 13392_13_3)	0.2182081	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-202	(RLBP1, 12936_38_3)	0.68226826	[0.64-0.72] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-195	(TMEM87B, 13485_20_3)	0.688127	[0.65-0.73] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-19	(OPCML, 3634_5_4)	0.2077808	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-18	(NRAC, 13464_8_3)	0.20181409	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-175	(OLFML3, 8660_33_3)	0.6414764	[0.6-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-17	(MAP3K7 TAB1, 5259_2_3)	0.19739872	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-17	(AHSP, 9025_5_3)	0.20379128	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-16	(NXPH3, 6054_6_3)	0.19678737	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-15	(DUSP4, 10035_6_3)	0.1912958	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-14	(STX3, 7186_111_3)	0.18439959	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-14	(SPSB1, 13942_140_3)	0.17789869	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-13	(RYK, 5583_62_3)	0.18050846	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-13	(MMEL1, 3627_71_4)	0.16776903	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-13	(MDM2, 13228_75_3)	0.1757567	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-124	(NR1H2, 9016_12_3)	0.5481364	[0.5-0.59] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-12	(CLC, 11094_104_3)	0.17173326	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-116	(SIGLEC12, 8352_26_3)	0.52592266	[0.48-0.57] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-115	(GCNT4, 10842_7_3)	0.52658576	[0.48-0.57] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-11	(ZP4, 7766_25_3)	0.15495177	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-11	(RNF146, 11401_181_3)	0.1571638	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-102	(SMIM10, 9379_248_3)	0.507139	[0.46-0.55] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-10	(SLC6A14, 13053_6_3)	0.14395273	[0.099-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-10	(PBRM1, 12518_289_3)	0.15275533	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-10	(OLA1, 12659_13_3)	0.1510887	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-10	(MSR1, 3684_78_3)	0.14840561	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	5E-10	(ACE2, 2805_6_2)	0.14754501	[0.1-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(SERPINA12, 6551_94_3)	0.143556	[0.096-0.191] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(MFAP3L, 8837_8_3)	0.14287075	[0.096-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(IL27 EBI3, 2829_19_2)	0.14435083	[0.096-0.192] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(HS6ST1, 5465_32_3)	0.14234315	[0.095-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(BMP15, 11129_66_3)	0.14363936	[0.096-0.191] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-9	(ASTL, 7993_23_3)	0.14347894	[0.096-0.191] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-81	(CDH3, 2643_57_2)	0.44864324	[0.4-0.49] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-80	(ECE1, 3611_70_4)	0.42973828	[0.39-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-63	(ROCK2, 13654_1_3)	0.39905405	[0.35-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-624	(VTN, 13125_45_3)	1.0536612	[1.02-1.08] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-58	(HBZ, 6919_3_3)	0.38309905	[0.34-0.43] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-56	(KLRC3, 11571_75_3)	0.3811821	[0.33-0.43] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-44	(SLC5A5, 12826_5_3)	0.3334466	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-43	(CNGA2, 12872_35_3)	0.33320066	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-41	(LIPN, 8097_77_3)	0.315939	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-36	(C5orf63, 13378_80_3)	0.28866565	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-35	(JAK2, 11816_84_3)	0.29161587	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-332	(GDF5, 2752_62_2)	0.8570161	[0.82-0.9] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-32	(ROR1, 13400_13_3)	0.2785465	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-32	(AIF1, 2849_49_1)	0.2823872	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-31	(C1QBP, 4967_1_1)	0.27392906	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-283	(ADGRF1, 11243_90_3)	0.80052197	[0.76-0.84] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-26	(UBE3A, 11226_16_3)	0.25419813	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-26	(TMCC3, 11294_7_3)	0.25052178	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-26	(PRSS27, 3624_3_4)	0.24894167	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-25	(ZNF10, 11567_23_3)	0.24183516	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-25	(TAGLN2, 9201_13_3)	0.2532125	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-23	(SFXN5, 13729_26_3)	0.24149859	[0.19-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-23	(CDKN2B, 9874_28_3)	0.23248404	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-22	(NSF, 13992_12_3)	0.22700138	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-22	(CLCA2, 8950_4_3)	0.2246511	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-21	(RAB5C, 14287_6_3)	0.2258417	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-21	(JAM2, 2997_8_1)	0.2237263	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-21	(HPGD, 4995_16_1)	0.22509314	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-180	(RNMTL1, 9584_105_3)	0.64892006	[0.61-0.69] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-18	(RAB14, 14283_12_3)	0.21057609	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-17	(UTS2, 6020_52_3)	0.20201506	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-17	(SPINK5, 8028_22_3)	0.20259404	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-16	(TNFRSF1A, 2654_19_1)	0.19383259	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-16	(RCAN1, 13465_5_3)	0.19478866	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-16	(IL36G, 9117_4_3)	0.20004642	[0.15-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-16	(DAPK2, 4355_13_1)	0.19331199	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-14	(SERPINB1, 10737_96_3)	0.18418363	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-14	(PSMA1, 7880_9_3)	0.17938742	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-14	(CLCA1, 10496_11_3)	0.18238273	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-13	(MDM4, 13229_20_3)	0.17494686	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-122	(SEMA3A, 3222_11_2)	0.55565834	[0.51-0.6] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-12	(CSF3, 8952_65_3)	0.16647893	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-12	(C20orf173, 7046_6_3)	0.16987556	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-12	(BACH2, 12756_3_3)	0.16796215	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-11	(UBC, 6647_55_3)	0.1586732	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-11	(NCOA2, 14045_12_3)	0.1640353	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-11	(GPD1L, 12420_10_3)	0.1575816	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-10	(SCARA3, 11292_13_3)	0.15049192	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-10	(LRP1, 8601_167_3)	0.15472382	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-10	(GRAP2, 5265_12_3)	0.15237306	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	4E-10	(ARF6, 12425_104_3)	0.15313128	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-905	(MINOS1, 7956_11_3)	1.1989934	[1.17-1.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(YBX2, 6372_7_3)	0.13845962	[0.093-0.184] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(TNFSF18, 2708_54_2)	0.14442866	[0.097-0.192] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(TNFRSF11B, 8304_50_3)	0.1329816	[0.089-0.177] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(PFN2, 13054_87_3)	0.14184044	[0.095-0.189] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(MCEE, 9388_18_3)	0.14393465	[0.097-0.191] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(ADM, 8518_55_3)	0.14350243	[0.096-0.191] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-9	(ADAM7, 10753_31_3)	0.14496222	[0.097-0.193] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-81	(SH2D1A, 4567_82_2)	0.450257	[0.41-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-78	(ESD, 4984_83_1)	0.43947092	[0.39-0.48] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-76	(C1QTNF1, 6304_8_3)	0.43480933	[0.39-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-656	(TMPRSS6, 11239_49_3)	1.0858805	[1.06-1.12] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-53	(UBXN4, 9970_7_3)	0.3662742	[0.32-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-51	(RFESD, 13603_7_3)	0.35524994	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-47	(PFKFB3, 12456_5_3)	0.34679118	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-46	(MASP1, 3605_77_4)	0.32768673	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-45	(CBLN1, 9313_27_3)	0.33314675	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-371	(PCDHGC3, 7859_21_3)	0.8769464	[0.84-0.91] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-37	(RAB18, 12945_33_3)	0.30074114	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-34	(EPHB4, 3612_6_4)	0.28845224	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-34	(ARHGEF7, 13932_45_3)	0.2874736	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-33	(STK17B, 5249_31_3)	0.27768064	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-33	(RAD51L3, 12554_10_3)	0.28570828	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-31	(NRSN1, 11654_77_3)	0.28233376	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-31	(GCK, 12960_9_3)	0.2789449	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-30	(MPZL2, 9372_157_3)	0.27780935	[0.23-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-30	(GBP6, 7818_101_3)	0.2709216	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-30	(ENAH, 9757_29_3)	0.27268234	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-29	(SFRP2, 7751_121_3)	0.265289	[0.22-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-29	(CLEC4G, 10781_19_3)	0.2707388	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-28	(DNAJC4, 8653_132_3)	0.26271138	[0.22-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-271	(GPR142, 12766_33_3)	0.7656075	[0.73-0.8] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-26	(SMPDL3A, 4771_10_3)	0.24997088	[0.2-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-253	(AMH, 4923_79_1)	0.76595414	[0.73-0.81] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-25	(IL22, 2778_10_2)	0.24612762	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-25	(CABP7, 7104_71_3)	0.25582442	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-24	(PDE2A, 5246_64_3)	0.24132408	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-24	(CD63, 9190_7_3)	0.2411171	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-23	(RNF122, 11160_56_3)	0.2363359	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-22	(IBSP, 14023_84_3)	0.23653094	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-22	(DCP1A, 14008_22_3)	0.23364356	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-20	(STAP1, 12510_3_3)	0.22098763	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-20	(HSPA1L, 12041_33_3)	0.227144	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-193	(GPR64, 10767_52_3)	0.66243863	[0.62-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-18	(MADCAM1, 11258_41_3)	0.20877326	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-18	(LRPAP1, 3640_14_3)	0.21240677	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-18	(EPHB2, 5077_28_3)	0.20972523	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-18	(ALDH1A3, 9835_16_3)	0.2108537	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-17	(RCN2, 10645_72_3)	0.20061047	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-17	(GABBR2, 13948_50_3)	0.2017226	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-17	(CRABP1, 11967_23_3)	0.20854647	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-16	(PVRIG, 6464_40_3)	0.1943298	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-16	(LGALS7, 9400_40_3)	0.19461492	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-16	(KDR, 3651_50_5)	0.1974095	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-14	(EPHA5, 14089_41_3)	0.18355182	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-13	(MARCO, 9003_99_3)	0.17097026	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-13	(EVPL, 14019_73_3)	0.17956929	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-13	(CTSB, 3061_61_2)	0.17605166	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-12	(TMEM52B, 9778_45_3)	0.17348847	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-12	(SRXN1, 14268_4_3)	0.16758679	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-12	(PSMD1, 10735_12_3)	0.17243858	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-12	(AURKB, 3346_72_2)	0.1690512	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-12	(ADRM1, 9057_19_3)	0.16988035	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-11	(TMEM132B, 8890_9_3)	0.16044894	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-11	(CLEC2D, 7054_87_3)	0.15658416	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-11	(ASGR2, 9474_22_3)	0.16123226	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-103	(APBB3, 12784_10_3)	0.49724153	[0.45-0.54] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(TPM3, 9890_8_3)	0.15193398	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(TGM1, 11242_33_3)	0.15377013	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(PGM1, 9173_21_3)	0.1522673	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(GRAMD1C, 8842_16_3)	0.15399392	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(FGFBP1, 9507_55_3)	0.15326066	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(ELL, 11459_81_3)	0.15638442	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(CTNNB1, 8424_269_3)	0.15281335	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(CSH1 CSH2, 13103_125_3)	0.15136412	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(CAMK1D, 3418_12_2)	0.14726768	[0.1-0.19] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	3E-10	(AGA, 10435_2_3)	0.15089124	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-96	(MMP13, 4925_54_2)	0.49720144	[0.45-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-93	(NMRAL1, 13988_67_3)	0.47385144	[0.43-0.52] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-92	(RFFL, 14186_13_3)	0.48049915	[0.44-0.53] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-92	(DIABLO, 3122_6_2)	0.47435543	[0.43-0.52] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-9	(VTN, 8280_238_3)	0.14637089	[0.099-0.194] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-9	(VEGFA, 2597_8_3)	0.14770353	[0.1-0.196] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-9	(ST8SIA4, 7038_45_3)	0.1451276	[0.098-0.193] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-9	(LILRB3, 11334_7_3)	0.14668384	[0.099-0.194] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-9	(HHLA2, 14132_21_3)	0.14232002	[0.096-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-82	(TPT1, 14072_9_3)	0.45471418	[0.41-0.5] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-80	(COTL1, 4905_63_1)	0.45051017	[0.41-0.5] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-787	(FKBP6, 12529_32_3)	1.1416847	[1.11-1.17] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-67	(CDH12, 10701_30_3)	0.40124676	[0.36-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-64	(SLC22A16, 9969_8_3)	0.4006422	[0.36-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-61	(TRIL, 6527_1_3)	0.3928479	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-61	(GCSH, 10956_82_3)	0.40199634	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-56	(CDH6, 3591_51_3)	0.36320743	[0.32-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-55	(PNPLA2, 9802_27_3)	0.37382334	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-54	(DMKN, 5963_9_3)	0.37051594	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-54	(APOL1, 9506_10_3)	0.37434712	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-53	(WDR1, 10723_41_3)	0.36735865	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-51	(MAP2K3, 6151_18_3)	0.35924777	[0.31-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-50	(PIK3R1, 8863_3_3)	0.36052966	[0.31-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-48	(MSTN, 12077_32_3)	0.33797646	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-471	(MAPKAPK5, 8382_47_3)	0.97839785	[0.94-1.01] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-47	(AIFM1, 9522_3_3)	0.33951214	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-45	(PKD2, 13486_9_3)	0.33610392	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-45	(CLMP, 9585_80_3)	0.33706805	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-43	(MOB1A, 12426_19_3)	0.32238415	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-42	(OCIAD1, 3635_76_4)	0.3196499	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-42	(GPC1, 8697_38_3)	0.3210729	[0.28-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-42	(BMP6, 3736_60_3)	0.3199632	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-39	(DKKL1, 3644_5_4)	0.3121002	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-38	(SH2D3C, 12704_26_3)	0.31038442	[0.26-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-35	(ZFYVE27, 13432_9_3)	0.29872137	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-35	(STK16, 3471_49_1)	0.292925	[0.25-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-35	(SIRT2, 5030_52_1)	0.30005106	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-34	(DNAJB14, 8037_53_3)	0.28992668	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-33	(TP53, 6152_111_3)	0.28635547	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-32	(METTL1, 12514_16_3)	0.284284	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-32	(COX7A1, 8390_25_3)	0.28217715	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-31	(LRP1B, 11275_94_3)	0.28497872	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-31	(IL10RA, 10344_334_3)	0.2793949	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-31	(ADI1, 12457_10_3)	0.27918845	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-30	(CD34, 11285_8_3)	0.2772778	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-293	(ATP4B, 9994_217_3)	0.80190766	[0.76-0.84] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-29	(TAGLN2, 11636_33_3)	0.2734891	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-29	(GSTM3, 9748_31_3)	0.27545285	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-29	(ASGR1, 5452_71_3)	0.27248803	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-28	(HINT2, 5612_16_3)	0.26620036	[0.22-0.31] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-28	(DDX46, 14216_35_3)	0.26882112	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-27	(HCAR2, 13495_48_3)	0.26167756	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-27	(CDH15, 11215_6_3)	0.25609332	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-26	(VPS29, 14318_1_3)	0.25715935	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-26	(PKLR, 11203_97_3)	0.25701952	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-25	(USP21, 12681_63_3)	0.24497354	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-25	(CDH15, 5410_53_3)	0.24392949	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-24	(PDIA3, 4719_58_2)	0.23835702	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-23	(THSD1, 5621_64_3)	0.24296297	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-23	(MT1F, 10416_79_3)	0.23939735	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-23	(IL17RB, 5084_154_3)	0.2401662	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-23	(DEAF1, 6369_82_3)	0.23542082	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-22	(GPR68, 12503_5_3)	0.23018634	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-22	(EDDM3A, 9536_16_3)	0.23611853	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-22	(DPP7, 3608_12_5)	0.23384017	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-22	(CPM, 7768_10_3)	0.23349112	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-21	(TLR2, 3835_11_2)	0.23415925	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-21	(SLITRK4, 7139_14_3)	0.22258538	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-21	(IL36A, 10928_7_3)	0.22874169	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-20	(RAB35, 13514_121_3)	0.22495602	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-20	(ICT1, 6380_23_3)	0.22341324	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-20	(HERC5, 12934_1_3)	0.21857707	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-20	(ANGPTL4, 3796_79_2)	0.22051398	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-19	(NUDT12, 13947_371_3)	0.21423955	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-19	(C5orf46, 9100_32_3)	0.21575227	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-187	(IL31, 10455_196_3)	0.67100567	[0.63-0.71] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-183	(EMC4, 13516_46_3)	0.6441263	[0.6-0.69] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-18	(C1orf185, 10667_78_3)	0.21672103	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-172	(HTR6, 13561_5_3)	0.632334	[0.59-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-172	(AIP, 3839_60_2)	0.64793366	[0.61-0.69] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-17	(UPK3BL, 6633_43_3)	0.20540185	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-17	(TRIB2, 12363_70_3)	0.20764992	[0.16-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-17	(MIOX, 13498_1_3)	0.20065783	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-17	(KIAA1024, 9075_121_3)	0.20547523	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(TCTN2, 11433_11_3)	0.18963017	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(SCMH1, 12604_16_3)	0.19736233	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(RMI1, 13926_1_3)	0.19207598	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(PUF60, 10575_31_3)	0.18991041	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(NUCB1, 10451_11_3)	0.19228353	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(NRAS, 10531_18_3)	0.19335294	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(GAL3ST1, 8696_15_3)	0.18904035	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(CTSH, 3737_6_3)	0.18744452	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-15	(APMAP, 10605_22_3)	0.1936233	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-14	(ZNF275, 9609_25_3)	0.18643269	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-14	(SPARC, 14110_200_3)	0.1812992	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-14	(KLHL13, 12463_7_3)	0.18333395	[0.14-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-14	(ELK1, 10006_25_3)	0.18847327	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-132	(DYNAP, 10692_48_3)	0.56420374	[0.52-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-13	(RPSA, 4957_1_2)	0.17848672	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-13	(MGAT4A, 9392_43_3)	0.17483877	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-13	(MFN1, 11364_18_3)	0.17542684	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-13	(IFIT2, 9853_3_3)	0.17350054	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-13	(GDF9, 3067_67_1)	0.17474888	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-12	(WFDC3, 6384_19_3)	0.16972113	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-12	(CSTL1, 6368_9_3)	0.17051634	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-11	(PENK, 9076_25_3)	0.15922797	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-11	(NCR1, 5104_57_3)	0.1594274	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-11	(FLNA, 11108_16_3)	0.16373485	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-11	(ERP44, 6064_4_3)	0.16464563	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-105	(EDN2, 12574_36_3)	0.5298333	[0.48-0.58] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-103	(FUT9, 6991_24_3)	0.49329615	[0.45-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-101	(SPACA3, 8076_4_3)	0.5031961	[0.46-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(SRL, 10940_25_3)	0.1520261	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(NRXN3, 7093_20_3)	0.1551007	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(HRC, 6584_1_3)	0.15523633	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(HNRNPH1, 14309_8_3)	0.15756877	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(COX7A2L, 9590_10_3)	0.15307014	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(CASQ1, 11263_57_3)	0.1551117	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	2E-10	(ANP32B, 4194_26_3)	0.1547835	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-99	(ATP13A1, 13659_36_3)	0.50418234	[0.46-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-90	(MTPAP, 9028_5_3)	0.46451637	[0.42-0.51] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(TWSG1, 9234_8_3)	0.1470891	[0.1-0.194] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(SYTL4, 11563_51_3)	0.1442799	[0.098-0.191] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(SELL, 4831_4_2)	0.14569178	[0.099-0.193] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(RNF149, 9773_15_3)	0.1481987	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(OOSP2, 7106_37_3)	0.14428404	[0.098-0.191] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(KLRC4, 10552_88_3)	0.1497023	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(ISOC1, 9816_37_3)	0.1465519	[0.1-0.193] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-9	(AHSG, 3581_53_3)	0.14356811	[0.098-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-83	(CTXN3, 10467_58_3)	0.47142178	[0.43-0.52] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-8	(TXNIP, 11682_7_3)	0.1349951	[0.089-0.181] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-8	(SLC25A18, 5280_68_5)	0.14072187	[0.093-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-66	(OLFM3, 11143_32_3)	0.40862122	[0.36-0.45] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-61	(MICALL2, 12891_1_3)	0.3934521	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-61	(MFAP4, 5636_10_3)	0.3876529	[0.34-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-60	(SPATA20, 11117_2_3)	0.39385888	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-59	(CD34, 9023_9_3)	0.38810536	[0.34-0.43] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-58	(FLT3, 3437_80_3)	0.37061656	[0.33-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-572	(GEM, 12817_1_3)	1.0401698	[1.01-1.07] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-54	(CNTNAP5, 9044_1_3)	0.3725512	[0.33-0.42] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-53	(SPRN, 13447_42_3)	0.36723602	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-52	(KLK15, 6491_59_3)	0.3562105	[0.31-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-51	(RDH16, 12881_17_3)	0.36122736	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-490	(LRRK2, 10990_21_3)	0.9837148	[0.95-1.02] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-44	(FAM3B, 5618_50_3)	0.33374202	[0.29-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-44	(CSNK2B, 11330_15_3)	0.33025464	[0.28-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-43	(RASA1, 5481_16_3)	0.3397671	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-41	(VWA2, 7128_9_3)	0.326398	[0.28-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-41	(TNFRSF11A, 5424_55_3)	0.31924978	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-41	(LDOC1, 8378_3_4)	0.31963503	[0.27-0.37] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-40	(NAB1, 13933_276_3)	0.32069215	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-39	(THRA, 12527_50_3)	0.31678185	[0.27-0.36] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-38	(POFUT2, 6042_52_3)	0.30669507	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-38	(DYRK3, 4359_87_1)	0.30381498	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-37	(TWF1, 12871_10_3)	0.30668047	[0.26-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-37	(CDH11, 7763_25_3)	0.30721962	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-349	(JAK2, 4998_50_2)	0.8910276	[0.85-0.93] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-34	(SFN, 4829_43_6)	0.29132476	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-322	(MVK, 11391_69_3)	0.849411	[0.81-0.89] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-32	(PKN1, 12562_1_3)	0.29134294	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-32	(NHLRC3, 9087_8_3)	0.28490442	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-31	(HSD17B1, 4708_3_2)	0.27075434	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-31	(EQTN, 11162_37_3)	0.28610784	[0.24-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-30	(ST14, 10927_65_3)	0.2822413	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-30	(EMILIN3, 9991_112_3)	0.27765375	[0.23-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-29	(APBB1, 12822_34_3)	0.2699511	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-28	(FCRL2, 8085_10_3)	0.2701351	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-28	(CDC42BPB, 3629_60_4)	0.25971532	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-273	(TOR1AIP1, 9039_47_3)	0.7940181	[0.75-0.83] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-27	(CD96, 9735_44_3)	0.2573185	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-25	(PCYOX1L, 5599_88_3)	0.25325415	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-24	(CD99L2, 10539_30_3)	0.24293351	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-23	(ST6GALNAC1, 7867_154_3)	0.23940842	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(SCGN, 10894_25_3)	0.23321691	[0.19-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(RRM2B, 8854_59_3)	0.24176851	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(PMEL, 6472_40_3)	0.22918762	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(ENOX2, 13422_66_3)	0.22987531	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(CXCL3 CXCL2, 3148_49_1)	0.22869201	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-22	(C7, 2888_49_2)	0.23586363	[0.19-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-21	(TIGAR, 12476_50_3)	0.22663768	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-21	(PCDHB4, 10522_167_3)	0.22809145	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-21	(ETHE1, 3847_56_2)	0.23096491	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-209	(CPN2, 6415_90_3)	0.6995749	[0.66-0.74] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-200	(SLC35G2, 13501_10_3)	0.683843	[0.64-0.73] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-20	(UBE2D4, 13475_10_3)	0.2240437	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-20	(PSMD9, 13931_22_3)	0.22754662	[0.18-0.27] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-20	(MAZ, 13436_54_3)	0.23018178	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-19	(CRABP2, 11696_7_3)	0.21447848	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-18	(TAX1BP3, 12498_12_3)	0.21295597	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-18	(LRRC37A2, 8897_3_3)	0.21691023	[0.17-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-18	(CDH2, 3797_1_1)	0.21332225	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-17	(SECTM1, 13093_6_3)	0.20858867	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-17	(BACH1, 12451_62_3)	0.20587955	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-16	(GRB7, 11281_6_3)	0.20496488	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-16	(AZGP1, 9312_8_3)	0.20080625	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-157	(ARHGEF2, 12848_9_3)	0.6206749	[0.58-0.66] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(LMCD1, 9530_6_3)	0.19637494	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(LIF, 7790_21_3)	0.19479153	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(KLK14, 3681_87_3)	0.19128755	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(JAKMIP3, 9068_17_3)	0.19000314	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(GSTA1, 12446_49_3)	0.18957089	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-15	(FKBP2, 9339_204_3)	0.19213994	[0.15-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-14	(IL1B, 3037_62_1)	0.18371162	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-14	(DEFB121, 5765_53_3)	0.18867011	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-14	(CXCL1, 2985_35_1)	0.18252558	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-133	(ARSB, 3172_28_2)	0.57030153	[0.53-0.61] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-131	(KIF3A, 13961_18_3)	0.577817	[0.53-0.62] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-130	(NDUFB4, 10677_9_3)	0.5583991	[0.52-0.6] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-130	(COPS2, 14029_42_3)	0.562091	[0.52-0.61] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-13	(ITGB2, 12750_9_3)	0.18188587	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-13	(FGF10, 2441_2_4)	0.17773649	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-13	(FAM210A, 14593_152_3)	0.17740257	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-13	(CCL3L1, 2783_18_2)	0.17767599	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-12	(SLC14A2, 12818_159_3)	0.17330109	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-12	(NSDHL, 8038_41_3)	0.17424579	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-12	(GRAP, 12820_1_3)	0.17443906	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-12	(GNRH1, 5627_53_3)	0.17487665	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-12	(FOXRED1, 8017_23_3)	0.16799086	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-117	(TNFRSF12A, 5138_50_3)	0.5370433	[0.49-0.58] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(TRH, 5659_11_3)	0.16529623	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(STAU2, 12970_35_3)	0.16691597	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(SEPT10, 12690_33_3)	0.16529144	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(PDE11A, 5252_33_3)	0.15886854	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(KCNA10, 13042_7_3)	0.15910004	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(FST, 4132_27_2)	0.16473629	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(CTRL, 9229_9_3)	0.16248219	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(CSF2RA, 10438_19_3)	0.16216417	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(Apoa1, 3748_74_1)	0.16209798	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(ATP2A3, 13510_7_3)	0.16380972	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-11	(ARRB1, 12643_4_3)	0.16445199	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-106	(TCP11, 8334_65_3)	0.52327555	[0.48-0.57] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-100	(NEURL4, 13468_5_3)	0.49601686	[0.45-0.54] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(TENM4, 11365_17_3)	0.1574772	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(SULT4A1, 8357_43_3)	0.1562673	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(NDNF, 6604_59_3)	0.15405844	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(MAPK12, 5005_4_1)	0.15548922	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(LRP2, 10618_190_3)	0.15499544	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(HMGB3, 12775_6_3)	0.1519732	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(EFNA2, 10801_11_3)	0.14989662	[0.1-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q11.2	NR	rs7212510-A	0.55078125	1E-10	(BRICD5, 6612_90_3)	0.15414259	[0.11-0.2] unit decrease	Illumina [> 1000000] (imputed)	N
788	chr17	26703681	26703682	rs7212510	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs7212510-A	0.509	3E-12	(Protein SERAC1, SERAC1.8985.13.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26706945	26706946	rs2027993	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	17q11.2		rs2027993-G	0.4478	5E-14		0.140414	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26706945	26706946	rs2027993	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NBR1	5,365 Icelandic ancestry individuals	NA	17q11.2		rs2027993-G	0.4478	6E-12		0.125546	[0.09-0.161] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26706945	26706946	rs2027993	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB3	5,360 Icelandic ancestry individuals	NA	17q11.2		rs2027993-G	0.4478	6E-16		0.145767	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26706945	26706946	rs2027993	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs2027993-T	0.514	1E-12	(Dual specificity protein phosphatase 4, DUSP4.10035.6.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	6E-16		0.0309947	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	4E-12		0.0257179	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	1E-14		0.0287261	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	1E-12		0.0266925	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	1E-14		0.0293693	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	1E-10		0.0250471	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	1E-11		0.0259171	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	5E-12		0.0262304	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q11.2		rs967645-C	0.483495	4E-13		0.0273758	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HMGB3	5,342 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	8E-24		0.173227	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERCC4	5,367 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	4E-12		0.132462	[0.095-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DUSP26	5,346 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	3E-16		0.138768	[0.11-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDC25B	5,348 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	4E-37		0.220252	[0.19-0.25] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCM2	5,341 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	8E-13		0.122512	[0.089-0.156] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMK1D	5,340 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	4E-18		0.144122	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANP32B	5,366 Icelandic ancestry individuals	NA	17q11.2		rs967645-C	0.4445	7E-18		0.162025	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	8E-26	(DCN1-like protein 5, DCUN1D5.8760.10.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	7E-16	(Abelson tyrosine-protein kinase 2, ABL2.5261.13.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	6E-13	(Filamin-A, FLNA.11124.9.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	5E-25	(Apolipoprotein A-V, APOA5.12908.15.3)	0.25	[0.21-0.29] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	5E-13	(Zinc-alpha-2-glycoprotein, AZGP1.9312.8.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	5E-13	(Cytoskeleton-associated protein 2, CKAP2.5345.51.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	3E-35	(Ras-related protein Rab-35, RAB35.13514.121.3)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	3E-12	(Serine/threonine-protein kinase 16, STK16.3471.49.1)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	3E-12	(Heterogeneous nuclear ribonucleoproteins C1/C2, HNRNPC.11429.80.3)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	2E-26	(Bone sialoprotein 2, IBSP.14023.84.3)	0.26	[0.22-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	2E-14	(Secreted frizzled-related protein 2, SFRP2.7751.121.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	2E-13	(Pyruvate kinase PKLR, PKLR.11203.97.3)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	2E-13	(Endothelin-converting enzyme 1, ECE1.3611.70.4)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	2E-12	(Complement component 1 Q subcomponent-binding protein, mitochondrial, C1QBP.4967.1.1)	0.17	[0.13-0.21] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	1E-20	(Cation-dependent mannose-6-phosphate receptor, M6PR.10491.21.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	1E-18	(Ephrin-B1, EFNB1.5746.37.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26713969	26713970	rs967645	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs967645-T	0.509	1E-11	(Dynactin-associated protein, DYNAP.10692.48.3)	0.16	[0.12-0.2] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	4E-35	(Cadherin-3, CDH3.2643.57.2)	0.3	[0.26-0.34] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	3E-21	(Kv channel-interacting protein 1, KCNIP1.13650.11.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	3E-18	(Endothelin-converting enzyme 1, ECE1.8767.44.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	3E-13	(Mitotic spindle assembly checkpoint protein MAD1, MAD1L1.13618.15.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	2E-21	(Transcription regulator protein BACH1, BACH1.12451.62.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	1E-47	(MICAL-like protein 2, MICALL2.12891.1.3)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	1E-17	(RNA polymerase II elongation factor ELL, ELL.11459.81.3)	0.21	[0.17-0.25] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26716820	26716821	rs4795433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs4795433-T	0.51	1E-16	(Leukemia inhibitory factor, LIF.7790.21.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
788	chr17	26716916	26716917	rs4795434	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF18	5,339 Icelandic ancestry individuals	NA	17q11.2		rs4795434-G	0.4517	5E-15		0.127558	[0.096-0.159] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26716916	26716917	rs4795434	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARF6	5,340 Icelandic ancestry individuals	NA	17q11.2		rs4795434-G	0.4517	3E-19		0.146541	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26717267	26717268	rs4794828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPM3	5,362 Icelandic ancestry individuals	NA	17q11.2		rs4794828-G	0.4511	1E-22		0.182883	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26717267	26717268	rs4794828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGM1	5,363 Icelandic ancestry individuals	NA	17q11.2		rs4794828-G	0.4511	2E-20		0.172205	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26717267	26717268	rs4794828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM213A	5,364 Icelandic ancestry individuals	NA	17q11.2		rs4794828-G	0.4511	8E-14		0.137447	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
788	chr17	26718176	26718177	rs6505079	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	SARM1	rs6505079-A	0.511	8E-21	(Cellular retinoic acid-binding protein 1, CRABP1.11967.23.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	7E-232	(GTP-binding protein GEM, GEM.12817.1.3)	0.81	[0.77-0.85] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	7E-110	(rRNA methyltransferase 3, mitochondrial, RNMTL1.9584.105.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	5E-467	(MICOS complex subunit MIC10, MINOS1.7956.11.3)	1.03	[0.99-1.07] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	5E-318	(Vitronectin, VTN.13125.45.3)	0.91	[0.87-0.95] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	3E-331	(Inactive peptidyl-prolyl cis-trans isomerase FKBP6, FKBP6.12529.32.3)	0.92	[0.88-0.96] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	1E-187	(Growth/differentiation factor 5, GDF5.2752.62.2)	0.74	[0.68-0.8] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26718899	26718899	rs35495893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q11.2	NR	rs35495893-GT	0.331	1E-105	(COP9 signalosome complex subunit 2, COPS2.14029.42.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
788	chr17	26719624	26719625	rs9894260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q11.2	NR	rs9894260-T	NR	5E-9		0.0255	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
788	chr17	26719624	26719625	rs9894260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q11.2	NR	rs9894260-T	NR	3E-9		0.0258	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
788	chr17	26719624	26719625	rs9894260	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q11.2	NR	rs9894260-T	NR	3E-11		0.0289	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
788	chr17	26719787	26719788	rs35714695	28931804	Benyamin B	2017-09-20	Nat Commun	Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	1,234 Chinese ancestry cases, 2,850 Chinese ancestry controls, 12,577 European ancestry cases, 23,475 European ancestry controls	576 cases, 683 controls	17q11.2	SARM1	rs35714695-?	NR	3E-10		0.0281	[0.019-0.037] unit increase	Illumina [at least 6613544] (imputed)	N
788	chr17	26719787	26719788	rs35714695	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	17q11.2	SARM1	rs35714695-?	0.82	1E-8		1.11	[NR] (NL3 cohort)	Illumina [8697640] (imputed)	N
788	chr17	26722039	26722039	rs34879232	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q11.2	SLC46A1	rs34879232-?	0.4208	2E-8		0.0155	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	9E-48	(Semaphorin-3A)	0.6172	[0.54-0.7] unit decrease	Affymetrix [509946]	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	8E-10	(EA, UMP-CMP kinase)	0.2702	[0.18-0.36] unit increase	Affymetrix [509946]	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	5E-24	(EA, Interleukin-5)	0.4344	[0.35-0.52] unit increase	Affymetrix [509946]	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	3E-24	(Calcium/calmodulin-dependent protein kinase type 1D)	0.4461	[0.36-0.53] unit decrease	Affymetrix [509946]	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	2E-9	(EA, Serine protease 27)	0.2642	[0.18-0.35] unit increase	Affymetrix [509946]	N
788	chr17	26725264	26725265	rs2239908	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q11.2	CTB-96E2.3, SARM1, CTB-96E2.6, CTB-96E2.10, VTN, SLC46A1, CTD-2350C19.2, H3F3BP2	rs2239908-G	0.459718	1E-10	(EA, WNT1-inducible-signaling pathway protein 1)	0.288	[0.2-0.37] unit decrease	Affymetrix [509946]	N
788	chr17	26733697	26733698	rs7212349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	17q11.2		rs7212349-T	0.445798	1E-12		0.0281352	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
788	chr17	26733697	26733698	rs7212349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q11.2		rs7212349-T	0.445798	3E-8		0.021925	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
788	chr17	26737887	26737888	rs6505081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q11.2	NR	rs6505081-T	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
788	chr17	26737887	26737888	rs6505081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q11.2	NR	rs6505081-T	NR	3E-12		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
788	chr17	26737887	26737888	rs6505081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q11.2	NR	rs6505081-T	NR	4E-16		0.0206	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
789	chr17	26817536	26817537	rs11568466	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17q11.2		rs11568466-A	0.2104	7E-10		0.12124064	[0.083-0.16] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
789	chr17	26820470	26820471	rs142179566	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q11.2	NR	rs142179566-A	0.02	6E-7		13.31	[NR] unit increase	Affymetrix [7884700] (imputed)	N
789	chr17	26824155	26824156	rs11567842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q11.2		rs11567842-G	NR	3E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
789	chr17	26837573	26837573	rs5819849	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	17q11.2	FOXN1	rs5819849-G	0.7411	8E-10	(Cer d18:2/24:0)	0.116	[0.078-0.154] unit increase	Illumina [~ 47000000] (imputed)	N
789	chr17	26858394	26858395	rs62066768	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17q11.2	FOXN1	rs62066768-A	0.08	1E-8		1.09	[1.07-1.11]	Illumina [at least 560000] (imputed)	N
789	chr17	26858394	26858395	rs62066768	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17q11.2	FOXN1	rs62066768-?	NR	1E-8		1.0893246	[1.06-1.12]	Illumina [13757430] (imputed)	N
789	chr17	26864301	26864302	rs532648	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	17q11.2	FOXN1	rs532648-C	0.35	8E-6	(left rib)	0.23	[0.13-0.33] g/cm2 decrease	Illumina [> 1100000]	N
789	chr17	26864301	26864302	rs532648	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	17q11.2	FOXN1	rs532648-C	0.35	1E-6	(pelvis)	0.24	[0.14-0.34] g/cm2 decrease	Illumina [> 1100000]	N
790	chr17	26903927	26903928	rs141921160	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALDOC	5,362 Icelandic ancestry individuals	NA	17q11.2		rs141921160-T	0.01193	3E-12		0.580495	[0.42-0.74] unit decrease	Illumina [7506463] (imputed)	N
790	chr17	26933740	26933741	rs34490907	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q11.2	NR	rs34490907-C	0.8878	2E-8		1.055	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
790	chr17	26952429	26952431	rs140327840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q11.2		rs140327840-T	NR	3E-11		0.0188	[0.013-0.024] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
790	chr17	26955329	26955330	rs12602520	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q11.2	NR	rs12602520-A	0.91	2E-8		0.0179	[0.011-0.024] unit decrease	NR [NR]	N
791	chr17	27003520	27003521	rs17720594	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q11.2	SUPT6H	rs17720594-A	0.0398	7E-14		0.4155	[0.31-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
791	chr17	27035915	27035916	rs12950047	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q11.2	PROCA1	rs12950047-A	0.564848	4E-19		0.020169446	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
791	chr17	27038414	27038431	rs539017525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q11.2	PROCA1	rs539017525-C	0.086762	1E-10		0.025678732	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
791	chr17	27044481	27044482	rs11545700	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	RPL23A	rs11545700-A	0.1251	8E-18		0.0247	[0.019-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
791	chr17	27044481	27044482	rs11545700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs11545700-?	NR	2E-15				NR [~ 8900000] (imputed)	N
791	chr17	27047243	27047243	rs529619980	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q11.2	RPL23A	rs529619980-?	0.8917	1E-9		0.0271	[0.018-0.036] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
791	chr17	27059665	27059666	rs57466243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q11.2	NEK8	rs57466243-A	0.5662	2E-10		0.02316807	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
791	chr17	27065001	27065002	rs199933041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17q11.2		rs199933041-T	NR	2E-9		2.5339	[1.7-3.37] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
791	chr17	27069392	27069393	rs1142899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q11.2	NEK8	rs1142899-T	0.555587	2E-13		0.016642556	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
791	chr17	27077330	27077331	rs3181215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q11.2	NR	rs3181215-G	0.203296	7E-106		0.054487	[0.05-0.059] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
791	chr17	27088625	27088626	rs7215310	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	17q11.2	NR	rs7215310-?	NR	2E-9				NR [2500000] (imputed)	N
791	chr17	27106812	27106812	rs57583458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	17q11.2	FAM222B	rs57583458-AAAAT	0.2154	3E-44		0.05978954	[0.051-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
791	chr17	27106871	27106872	rs7217547	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q11.2	NA	rs7217547-C	0.7883	2E-8	(Female)	1.052	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
791	chr17	27106993	27106994	rs201541427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q11.2	FAM222B	rs201541427-C	0.207402	5E-81		0.0525152	[0.047-0.058] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27152868	27152869	rs9303620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q11.2	FAM222B	rs9303620-C	0.278736	1E-16		0.020339435	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27164457	27164458	rs12450826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q11.2		rs12450826-T	NR	8E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
792	chr17	27167972	27167973	rs11652272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17q11.2		rs11652272-G	NR	2E-8		0.0325	[0.021-0.044] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
792	chr17	27167972	27167973	rs11652272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs11652272-G	0.218097	5E-17				Affymetrix, Illumina [24653286] (imputed)	N
792	chr17	27167972	27167973	rs11652272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q11.2	NR	rs11652272-G	0.198013	4E-20		0.021273	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
792	chr17	27169757	27169757	rs377687720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q11.2		rs377687720-TGCCGCCC	0.330478	3E-10		0.0241311	[0.017-0.032] unit increase	Illumina [13476266] (imputed)	N
792	chr17	27170155	27170156	rs12946844	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q11.2	NR	rs12946844-T	NR	5E-59		0.07867	[0.069-0.088] unit decrease	Affymetrix [16832071] (imputed)	N
792	chr17	27172519	27172520	rs28847895	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	17q11.2	FAM222B, ERAL1	rs28847895-?	NR	4E-9		0.02774	[0.019-0.037] unit increase novel	Illumina [6108953] (imputed)	N
792	chr17	27174522	27174523	rs11650788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q11.2		rs11650788-A	NR	2E-24		0.0207	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
792	chr17	27174522	27174523	rs11650788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q11.2	FAM222B	rs11650788-A	0.196551	4E-161		0.07526263	[0.07-0.081] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27174522	27174523	rs11650788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs11650788-A	0.230261	2E-43				Affymetrix, Illumina [24332387] (imputed)	N
792	chr17	27174522	27174523	rs11650788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q11.2	NR	rs11650788-A	0.196222	1E-206		0.074412	[0.07-0.079] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
792	chr17	27174522	27174523	rs11650788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q11.2		rs11650788-?	NR	6E-173				NR [~ 8900000] (imputed)	N
792	chr17	27178760	27178761	rs9892942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q11.2		rs9892942-T	NR	3E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q11.2	FAM222B	rs9892942-T	0.196904	4E-24		0.0281604	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q11.2	FAM222B	rs9892942-T	0.196961	3E-103		0.0589943	[0.054-0.064] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q11.2	NR	rs9892942-T	0.198526	1E-37		0.029953	[0.025-0.035] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs9892942-T	0.227846	4E-137				Affymetrix, Illumina [24246363] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q11.2	NR	rs9892942-T	0.198585	8E-130		0.055577	[0.051-0.06] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
792	chr17	27178760	27178761	rs9892942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs9892942-T	0.228486	1E-220				Affymetrix, Illumina [20825802] (imputed)	N
792	chr17	27178760	27178761	rs9892942	30955190	Yun S	2019-04-06	Clin Exp Nephrol	Genetic risk score raises the risk of incidence of chronic kidney disease in Korean general population-based cohort.	Estimated glomerular filtration rate reduction (30%)	up to 3,617 Korean ancestry individuals	NA	17q11.2	FAM222B, ERAL1	rs9892942-?	NR	9E-6		1.47	[NR]	Affymetrix [up to 1590162] (imputed)	N
792	chr17	27178760	27178761	rs9892942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q11.2		rs9892942-?	NR	5E-28				NR [~ 8900000] (imputed)	N
792	chr17	27178760	27178761	rs9892942	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	17q11.2	ERAL1	rs9892942-T	NR	6E-6	(Asian)	0.0032	[0.0018-0.0046] unit increase	NR [2500000] (imputed)	N
792	chr17	27178760	27178761	rs9892942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q11.2	FAM222B	rs9892942-T	0.1956	3E-35		0.05514714	[0.046-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27178760	27178761	rs9892942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q11.2	FAM222B	rs9892942-T	0.1956	9E-65		0.07584828	[0.067-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27179517	27179518	rs34901720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q11.2		rs34901720-G	NR	9E-64		0.0396	[0.035-0.044] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
792	chr17	27179589	27179590	rs35033748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q11.2		rs35033748-C	NR	6E-112		0.0523	[0.048-0.057] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
792	chr17	27179589	27179590	rs35033748	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q11.2	FAM222B	rs35033748-C	0.2041	2E-70		0.07764907	[0.069-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27182943	27182944	rs9895443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17q11.2		rs9895443-A	NR	2E-66		0.0392	[0.035-0.044] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
792	chr17	27182943	27182944	rs9895443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs9895443-A	0.741707	4E-122				Affymetrix, Illumina [21126107] (imputed)	N
792	chr17	27183103	27183104	rs9914988	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17q11.2	ERAL1	rs9914988-A	0.8028	5E-17		0.0125	[0.0094-0.0156] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
792	chr17	27183103	27183104	rs9914988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	17q11.2	NR	rs9914988-G	0.445518	1E-23		0.040064	[0.032-0.048] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
792	chr17	27183103	27183104	rs9914988	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	17q11.2	ERAL1	rs9914988-A	0.7877	3E-11		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
792	chr17	27183103	27183104	rs9914988	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q11.2	ERAL1	rs9914988-A	0.7961	6E-25		0.04576578	[0.037-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27183103	27183104	rs9914988	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q11.2	ERAL1	rs9914988-A	0.7961	2E-29		0.049934	[0.041-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27186583	27186584	rs2320588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q11.2	NR	rs2320588-G	0.207467	3E-266		0.081366	[0.077-0.086] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
792	chr17	27187019	27187020	rs2320587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs2320587-T	0.215576	2E-267				Affymetrix, Illumina [22063850] (imputed)	N
792	chr17	27187788	27187789	rs6803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	ERAL1	rs6803-T	0.794922	5E-193		0.08121974	[0.076-0.087] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27187788	27187789	rs6803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q11.2	ERAL1	rs6803-T	0.795058	3E-80		0.052589174	[0.047-0.058] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27187788	27187789	rs6803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs6803-?	NR	2E-239				NR [~ 8900000] (imputed)	N
792	chr17	27187788	27187789	rs6803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q11.2	ERAL1	rs6803-T	0.796	4E-53		0.06748314	[0.059-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27188295	27188296	rs28448745	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	17q11.2	MIR451B;ERAL1, MIR144, MIR451A, MIR4732	rs28448745-?	NR	2E-23		0.04253	[0.034-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
792	chr17	27189004	27189004	rs113231461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	17q11.2		rs113231461-CCCTTCCTCTT	0.55303	7E-30		0.0410274	[0.034-0.048] unit decrease	Illumina [13477028] (imputed)	N
792	chr17	27189970	27189971	rs1109024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q11.2		rs1109024-T	NR	6E-34		0.0346	[0.029-0.04] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
792	chr17	27191959	27191960	rs10853129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	17q11.2		rs10853129-A	0.551759	2E-21		0.0346581	[0.028-0.042] unit decrease	Illumina [13476299] (imputed)	N
792	chr17	27193072	27193072	rs35531439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q11.2	MIR451B	rs35531439-CAA	0.794782	1E-32		0.03273336	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27193072	27193072	rs35531439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q11.2	MIR451B	rs35531439-CAA	0.794797	2E-40		0.036668766	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27195673	27195674	rs138285687	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q11.2	ERAL1	rs138285687-T	0.0423	8E-15		0.3428	[0.26-0.43] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
792	chr17	27195870	27195871	rs9913973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	17q11.2	NR	rs9913973-G	0.45253	1E-17		0.035546	[0.027-0.044] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
792	chr17	27195870	27195871	rs9913973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	17q11.2	MIR4732, FLOT2	rs9913973-?	NR	1E-16		0.03534	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
792	chr17	27196747	27196748	rs8070966	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q11.2		rs8070966-T	0.15	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
792	chr17	27196747	27196748	rs8070966	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q11.2	NR	rs8070966-T	0.1558	8E-9				NR [9056863] (imputed)	N
792	chr17	27199481	27199481	rs35613836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q11.2		rs35613836-CT	0.54468	4E-23		0.02237124	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr17	27199517	27199518	rs9916877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q11.2		rs9916877-A	0.256475	9E-31		0.02982067	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
792	chr17	27202887	27202888	rs7221773	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	17q11.2	NR	rs7221773-?	NR	7E-8				NR [2500000] (imputed)	N
792	chr17	27206028	27206029	rs7213285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q11.2	FLOT2	rs7213285-A	0.1646	2E-12		0.03374861	[0.024-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
792	chr17	27210252	27210253	rs6505095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q11.2	Intergenic	rs6505095-T	0.6714	3E-8	(MTAG)	0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr17	27210252	27210253	rs6505095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q11.2	Intergenic	rs6505095-T	0.6712	3E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr17	27210252	27210253	rs6505095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q11.2	Intergenic	rs6505095-T	0.6642	3E-8	(MTAG)	0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr17	27213989	27213990	rs8081659	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	NR	rs8081659-?	NR	4E-6		4.609	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
792	chr17	27222744	27222745	rs7214973	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	17q11.2	FLOT2	rs7214973-A	0.625	1E-6		1.43	[1.24-1.66]	Affymetrix [7435577] (imputed)	N
792	chr17	27224798	27224799	rs12949907	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q11.2	NR	rs12949907-C	NR	2E-18		0.0279	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr17	27254899	27254900	rs184910283	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q11.2	NR	rs184910283-?	NR	3E-6	(Latino)	1.0577	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
793	chr17	27275395	27275396	rs143425049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs143425049-?	NR	2E-8				NR [~ 8900000] (imputed)	N
793	chr17	27284442	27284443	rs12941884	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	17q11.2	SEZ6	rs12941884-T	0.207178490103413	2E-7	(AA)	0.84	[0.53-1.15] unit increase	Illumina [247039]	N
793	chr17	27320231	27320232	rs34039488	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	17q11.2	PIPOX, SEZ6	rs34039488-G	0.162	5E-8		5.4607143	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
793	chr17	27320231	27320232	rs34039488	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	17q11.2	NR	rs34039488-A	0.157	6E-10		0.0187094	[0.013-0.025] unit decrease	NR [9732723] (imputed)	N
793	chr17	27323321	27323322	rs67777803	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q11.2	NR	rs67777803-T	0.172	4E-16		0.0116074	[0.0088-0.0144] unit decrease	NR [9732723] (imputed)	N
793	chr17	27323321	27323322	rs67777803	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q11.2	NR	rs67777803-T	0.172	3E-13		0.024601495	[0.018-0.031] unit decrease	NR [~ 10000000] (imputed)	N
793	chr17	27323321	27323322	rs67777803	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q11.2	NR	rs67777803-T	0.167	7E-9		0.0113487	[0.0075-0.0152] unit increase	NR [9732723] (imputed)	N
793	chr17	27324939	27324940	rs34479345	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q11.2	NR	rs34479345-A	NR	2E-10		0.0241	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr17	27341775	27341776	rs1844754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	PIPOX, AC024619.2	rs1844754-G	NR	1E-8		0.0277964	[0.018-0.037] unit decrease	Affymetrix [323123] (imputed)	N
793	chr17	27342051	27342052	rs76771105	33625064	Cindi Z	2021-02-17	J Acquir Immune Defic Syndr	Genetic Associations with Weight Gain among South Africans who Initiated Dolutegravir- and Tenofovir-containing Regimens.	Response to tenofovir disoproxil fumarate (body weight gain)	154 Black South African individuals	NA	17q11.2	LOC105371716	rs76771105-?	NR	1E-7				Illumina [NR] (imputed)	N
793	chr17	27363749	27363750	rs75581564	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	17q11.2		rs75581564-?	NR	7E-10		0.0283	unit increase	NR [NR]	N
793	chr17	27363749	27363750	rs75581564	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	17q11.2	NR	rs75581564-A	NR	2E-10		1.04	[1.03-1.05]	NR [NR] (imputed)	N
793	chr17	27363749	27363750	rs75581564	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	17q11.2	NR	rs75581564-A	0.1165	3E-13		1.025	[1.018-1.032]	NR [8098588] (imputed)	N
793	chr17	27371787	27371788	rs7211375	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	17q11.2	NR	rs7211375-G	0.9766	1E-23		3.3949	[2.73-4.06] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
793	chr17	27376590	27376591	rs8066520	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	17q11.2	PIPOX	rs8066520-G	0.849656	4E-6		0.038	[0.022-0.054] unit decrease	Illumina [1220000] (imputed)	N
793	chr17	27387414	27387415	rs7221150	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	PIPOX	rs7221150-A	0.0937	5E-6		0.0504	[0.029-0.072] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
793	chr17	27392147	27392148	rs111619531	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	17q11.2	NR	rs111619531-T	0.9713	5E-25		3.0135	[2.44-3.59] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
794	chr17	27415262	27415263	rs144975552	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q11.2	NR	rs144975552-G	0.03	9E-7		11.96	[NR] unit increase	Affymetrix [7884700] (imputed)	N
794	chr17	27422775	27422776	rs12938581	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q11.2	Intergenic	rs12938581-T	0.8309	2E-8	(MTAG)	0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
794	chr17	27426152	27426153	rs12453624	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	17q11.2	MYO18A	rs12453624-A	0.332	1E-5		0.07	[0.04-0.11] unit decrease	Affymetrix [7435577] (imputed)	N
794	chr17	27447904	27447905	rs12601994	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	17q11.2	MYO18A	rs12601994-T	0.156	2E-8		0.0288	[0.019-0.039] unit increase	Illumina [~ 250000] (imputed)	N
794	chr17	27460258	27460259	rs7225149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	MYO18A	rs7225149-G	NR	5E-9		0.0184215	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
794	chr17	27460258	27460259	rs7225149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	MYO18A	rs7225149-G	NR	4E-11		0.0207407	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
794	chr17	27463766	27463767	rs72817635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q11.2		rs72817635-G	NR	5E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
794	chr17	27464015	27464016	rs1388175	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs1388175-A	0.47	3E-26				Affymetrix [10369434] (imputed)	N
794	chr17	27491861	27491862	rs10438797	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	17q11.2	MYO18A, TWF1P1, TIAF1, CRYBA1	rs10438797-T	NR	9E-6	(resting duration)	0.1956	[0.11-0.28] unit decrease	Affymetrix [7141204] (imputed)	N
794	chr17	27495268	27495269	rs77135925	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	17q11.2	MYO18A, CRYBA1	rs77135925-?		8E-9				NR [6786993] (imputed)	N
794	chr17	27499880	27499881	rs66634575	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q11.2	NR	rs66634575-T	0.1831	4E-9		0.001721	[0.0011-0.0023] unit increase	Affymetrix [NR] (imputed)	N
794	chr17	27502028	27502029	rs11080090	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	17q11.2		rs11080090-?	NR	4E-6				Illumina [1365315]	N
794	chr17	27502028	27502029	rs11080090	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q11.2	NR	rs11080090-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
794	chr17	27502028	27502029	rs11080090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q11.2		rs11080090-?	NR	5E-8				NR [~ 8900000] (imputed)	N
794	chr17	27519871	27519872	rs78474684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs78474684-A	0.01045	1E-8	(CTSD)	2.883	NR unit increase	Illumina [1671387] (imputed)	N
795	chr17	27530412	27530413	rs12943783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q11.2	TWF1P1	rs12943783-C	0.40168	8E-9		0.013695482	[0.009-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
795	chr17	27533205	27533206	rs8067878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q11.2		rs8067878-?	NR	5E-8				NR [~ 8900000] (imputed)	N
795	chr17	27537241	27537242	rs7213514	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	17q11.2	NR	rs7213514-T	0.501604	2E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
795	chr17	27537409	27537410	rs34638952	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	17q11.2	MYO18A	rs34638952-A	0.636	1E-8	(EA, men)	0.091	[0.06-0.122] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
795	chr17	27540945	27540945	rs137873167	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	TWF1P1	rs137873167-ATTTATT	NR	6E-10		0.0196594	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
795	chr17	27540945	27540945	rs137873167	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	TWF1P1	rs137873167-ATTTATT	NR	3E-8		0.0175982	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
795	chr17	27549981	27549982	rs9907214	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs9907214-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
795	chr17	27564012	27564013	rs112178027	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs112178027-C	0.832	2E-15				Affymetrix [10369434] (imputed)	N
795	chr17	27564012	27564013	rs112178027	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	17q11.2	NR	rs112178027-T	0.1745	7E-10		6.157	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
795	chr17	27565994	27565995	rs74411146	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	intergenic	rs74411146-A	0.9575	4E-10		0.0294	[0.02-0.039] unit decrease	Affymetrix [18391927] (imputed)	N
795	chr17	27566325	27566326	rs7220340	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q11.2	NR	rs7220340-G	0.545	4E-9		0.0272	[0.018-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
795	chr17	27570621	27570622	rs9913225	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q11.2	NR	rs9913225-G	0.3742	5E-11		0.0262	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
795	chr17	27576961	27576962	rs17727765	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	17q11.2	CRYBA1, MYO18A, NUFIP2	rs17727765-C	0.08	9E-9		1.0526316	[1.04-1.07]	NR [9622763] (imputed)	N
795	chr17	27579010	27579011	rs55885610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q11.2	CRYBA1	rs55885610-T	0.035575	4E-15		0.048561204	[0.036-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
795	chr17	27579010	27579011	rs55885610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17q11.2	NR	rs55885610-C	0.964336	3E-10		0.022606	[0.016-0.03] unit increase	Affymetrix [16578495] (imputed)	N
795	chr17	27580774	27580775	rs117757092	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Wears glasses or contact lenses (UKB data field 2207)	405,672 European ancestry cases, 49,982 European ancestry controls	NA	17q11.2		rs117757092-A	0.003171	2E-17		0.47	[0.36-0.58] unit increase	NR [11842647] (imputed)	N
795	chr17	27588805	27588806	rs8614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17q11.2		rs8614-A	NR	2E-9		0.0496	[0.034-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
795	chr17	27588805	27588806	rs8614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17q11.2		rs8614-A	NR	8E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
795	chr17	27588805	27588806	rs8614	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q11.2		rs8614-C	0.813	2E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
795	chr17	27588805	27588806	rs8614	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	17q11.2		rs8614-C	0.817	2E-10		0.017	[0.011-0.023] unit decrease	Affymetrix [up to 90000000] (imputed)	N
795	chr17	27588805	27588806	rs8614	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs8614-?	NR	6E-9	(Brain stem)			NR [9227495] (imputed)	N
795	chr17	27588805	27588806	rs8614	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q11.2	NR	rs8614-A	0.185	1E-10		0.00898031	[0.0063-0.0117] unit increase	NR [9732723] (imputed)	N
795	chr17	27588805	27588806	rs8614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q11.2	Intergenic	rs8614-A	0.1895	1E-8	(MTAG)	0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
795	chr17	27588805	27588806	rs8614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q11.2	Intergenic	rs8614-A	0.1897	2E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
795	chr17	27588805	27588806	rs8614	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	17q11.2	NUFIP2	rs8614-A	NR	4E-9		0.0105	[0.007-0.014] unit increase	Affymetrix [9304965] (imputed)	N
795	chr17	27588980	27588982	rs143960646	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	17q11.2	NUFIP2	rs143960646-C	0.192	8E-8		0.0125	[0.0076-0.0174] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
795	chr17	27591324	27591325	rs3785961	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q11.2	NR	rs3785961-?	NR	1E-10				Affymetrix [NR]	N
795	chr17	27593641	27593642	rs62065197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs62065197-?	NR	2E-9				NR [~ 8900000] (imputed)	N
795	chr17	27611879	27611880	rs7214290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q11.2	NUFIP2	rs7214290-A	0.174439	5E-15		0.02268186	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
795	chr17	27632358	27632359	rs12952704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q11.2		rs12952704-C	NR	1E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
795	chr17	27632358	27632359	rs12952704	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q11.2	NR	rs12952704-?	NR	3E-6		0.00806	[0.0047-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
795	chr17	27645257	27645258	rs56336338	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	17q11.2		rs56336338-G	0.86	4E-7		0.043	[0.027-0.059] unit decrease	Affymetrix [NR]	N
795	chr17	27645257	27645258	rs56336338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q11.2		rs56336338-A	0.141158	4E-13		0.023212478	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
795	chr17	27645257	27645258	rs56336338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q11.2		rs56336338-A	0.141127	4E-12		0.022741126	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
795	chr17	27647629	27647630	rs797973	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	17q11.2	NR	rs797973-G	0.2882	2E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [at least 11579618] (imputed)	N
795	chr17	27648541	27648542	rs56853305	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q11.2	NR	rs56853305-G	0.859203	4E-10		0.0272089	[0.019-0.036] unit increase	Affymetrix [16577313] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	7E-9	(164 ms)	0.0339851	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	7E-10	(144 ms)	0.0356429	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	5E-9	(142 ms)	0.0337709	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	5E-10	(156 ms)	0.0360011	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	4E-9	(126 ms)	0.0337916	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	4E-8	(152 ms)	0.0323612	[0.02-0.044] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	3E-9	(128 ms)	0.0344167	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-9	(124 ms)	0.0351187	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-8	(186 ms)	0.0340976	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-8	(166 ms)	0.0325647	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-8	(148 ms)	0.0330116	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-10	(122 ms)	0.0381352	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	2E-10	(120 ms)	0.0384685	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	1E-9	(146 ms)	0.0355867	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	1E-8	(130 ms)	0.0340168	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27651027	27651028	rs8077048	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q11.2	NUFIP2	rs8077048-C	0.70591	1E-10	(154 ms)	0.0378612	[0.026-0.05] unit increase	Affymetrix [10000000] (imputed)	N
795	chr17	27653015	27653016	rs11653826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q11.2		rs11653826-?	NR	9E-10				NR [~ 8900000] (imputed)	N
796	chr17	27662270	27662271	rs143362241	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	17q11.2		rs143362241-A	0.55	3E-7		0.0487	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
796	chr17	27663847	27663848	rs2058122	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q11.2	NUFIP2	rs2058122-T	0.14226	6E-10		0.0186363	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
796	chr17	27666302	27666303	rs2530394	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q11.2	NUFIP2	rs2530394-C	0.339615	1E-11		0.0133624	[0.0095-0.0172] unit decrease	NR [13737936] (imputed)	N
796	chr17	27666302	27666303	rs2530394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs2530394-?	NR	3E-13				NR [~ 8900000] (imputed)	N
796	chr17	27669532	27669533	rs1712652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs1712652-C	0.52426	4E-1063				Affymetrix, Illumina [17210439] (imputed)	N
796	chr17	27671177	27671178	rs8068104	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	17q11.2		rs8068104-T	0.6041	4E-7		0.0496	[0.03-0.069] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
796	chr17	27675225	27675226	rs11653144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q11.2	Intergenic	rs11653144-T	0.3386	4E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
796	chr17	27675225	27675226	rs11653144	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NA	17q11.2	TAOK1	rs11653144-T	0.442	4E-8		0.13	[0.091-0.169] fL decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
796	chr17	27682626	27682627	rs58018068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	RP11-296K13.4	rs58018068-T	0.185247	3E-11		0.019032434	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
796	chr17	27697618	27697619	rs7222696	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs7222696-?	NR	3E-14		0.0156731	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
796	chr17	27699691	27699691	rs57968892	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q11.2	NR	rs57968892-TTTTTGTTTTG	0.3296	5E-6	(EA)	0.0317	[0.018-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
796	chr17	27703348	27703349	rs2138852	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	17q11.2	TAOK1	rs2138852-T	NR	1E-22		0.02	[0.012-0.020] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
796	chr17	27703348	27703349	rs2138852	19110211	Meisinger C	2008-12-24	Am J Hum Genet	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	17q11.2	TAOK1	rs2138852-C	0.47	7E-28		0.02	[0.01-0.02] per log fl decrease	Affymetrix [335152]	N
796	chr17	27705185	27705186	rs138472821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs138472821-?	NR	3E-20				NR [~ 8900000] (imputed)	N
796	chr17	27705769	27705770	rs149777351	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs149777351-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
796	chr17	27707638	27707640	rs61542570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q11.2	RP11-296K13.4, MIR4523	rs61542570-C	0.5163	3E-70		0.06454534	[0.057-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr17	27710247	27710248	rs146268882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q11.2	NR	rs146268882-T	0.196212	9E-454		0.11338	[0.11-0.12] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
796	chr17	27713244	27713245	rs7218758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs7218758-?	NR	6E-25				NR [~ 8900000] (imputed)	N
796	chr17	27714586	27714587	rs8076739	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	17q11.2	TAOK1	rs8076739-T	NR	5E-38		0.013	[0.011-0.015] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr17	27722040	27722041	rs2874402	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q11.2		rs2874402-C	0.485	5E-60				Affymetrix [10369434] (imputed)	N
796	chr17	27726150	27726151	rs9907984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q11.2	RP11-296K13.4, TAOK1	rs9907984-G	0.179692	3E-18		0.028742809	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr17	27726485	27726486	rs565366829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	17q11.2	NR	rs565366829-A	0.949183	3E-19		0.286819	[0.22-0.35] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
796	chr17	27732941	27732942	rs9900684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	17q11.2	NR	rs9900684-T	NR	9E-10		0.0198	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr17	27732941	27732942	rs9900684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q11.2	TAOK1	rs9900684-T	0.17951	2E-39		0.043571852	[0.037-0.05] unit increase	Affymetrix [93095623] (imputed)	N
796	chr17	27738478	27738479	rs147287326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs147287326-A	0.931	3E-9				Affymetrix [10369434] (imputed)	N
796	chr17	27750002	27750003	rs183783019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	TAOK1	rs183783019-T	0.00942600000000004	3E-9		0.07063432	[0.047-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr17	27753617	27753618	rs6505129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q11.2	NR	rs6505129-A	0.515707	2E-235		0.059971	[0.056-0.064] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
796	chr17	27769597	27769598	rs9900280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs9900280-A	0.612276	2E-239				Affymetrix, Illumina [24588908] (imputed)	N
796	chr17	27769597	27769598	rs9900280	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	17q11.2	TAOK1	rs9900280-G	0.52	1E-10		0.1	[NR] unit increase	Illumina [476395]	N
796	chr17	27773288	27773289	rs9891920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q11.2	TAOK1	rs9891920-G	0.5145	2E-298		0.1333078	[0.13-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr17	27778072	27778073	rs191010498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q11.2	TAOK1	rs191010498-T	0.010536	3E-19		0.099411786	[0.078-0.121] unit increase	Affymetrix [93095623] (imputed)	N
796	chr17	27778072	27778073	rs191010498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q11.2	TAOK1	rs191010498-T	0.010536	3E-59		0.17884299	[0.16-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr17	27778072	27778073	rs191010498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q11.2	TAOK1	rs191010498-T	0.0107	2E-26		0.1917807	[0.16-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr17	27779019	27779020	rs117032306	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs117032306-G	0.965	3E-16				Affymetrix [10369434] (imputed)	N
796	chr17	27785128	27785128	rs59723374	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	17q11.2		rs59723374-?	0.4926	3E-9		0.002853	unit decrease	NR [6200000] (imputed)	N
796	chr17	27785128	27785128	rs59723374	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	17q11.2		rs59723374-?	0.4926	9E-10		0.006902	unit decrease	NR [6200000] (imputed)	N
796	chr17	27785128	27785128	rs59723374	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	17q11.2		rs59723374-?	0.4926	2E-6		0.006702	unit decrease	NR [6200000] (imputed)	N
797	chr17	27792529	27792530	rs8065958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q11.2		rs8065958-A	NR	8E-187		0.0656	[0.061-0.07] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
797	chr17	27794987	27794988	rs517967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q11.2	TAOK1	rs517967-G	0.514029	5E-460		0.11693031	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
797	chr17	27796076	27796077	rs12946394	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	NR	rs12946394-?	NR	3E-6		4.699	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
797	chr17	27814495	27814496	rs559972	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	17q11.2	NR	rs559972-?	NR	1E-6		2.679879	[1.6-3.76] unit increase	Illumina [30743395] (imputed)	N
797	chr17	27814495	27814496	rs559972	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Platelet count	5,901 Dutch ancestry individuals	2,538 individuals	17q11.2	TAOK1	rs559972-?	NR	6E-6				Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
797	chr17	27814495	27814496	rs559972	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	17q11.2	TAOK1	rs559972-T	NR	3E-18		3.264	[2.53-4] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
797	chr17	27845773	27845774	rs200309755	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	17q11.2	NR	rs200309755-T	0.379593	2E-16		0.018	[0.014-0.022] unit decrease	Affymetrix [23037915] (imputed)	N
797	chr17	27845777	27845778	rs7209300	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q11.2	TAOK1	rs7209300-C	0.1807	2E-139		0.1185384	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
797	chr17	27853284	27853285	rs35763383	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs35763383-A	0.518	5E-118				Affymetrix [10369434] (imputed)	N
797	chr17	27853284	27853285	rs35763383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q11.2	TAOK1	rs35763383-G	0.48483	1E-66		0.044895455	[0.04-0.05] unit increase	Affymetrix [93095623] (imputed)	N
797	chr17	27863705	27863706	rs12943131	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	17q11.2		rs12943131-?	0.4826	4E-9		0.002763	unit decrease	NR [6200000] (imputed)	N
797	chr17	27863705	27863706	rs12943131	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	17q11.2		rs12943131-?	0.4826	6E-10		0.006864	unit decrease	NR [6200000] (imputed)	N
797	chr17	27863705	27863706	rs12943131	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	17q11.2		rs12943131-?	0.4826	1E-6		0.006665	unit decrease	NR [6200000] (imputed)	N
797	chr17	27863705	27863706	rs12943131	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q11.2	NR	rs12943131-A	0.5326	8E-7		0.0087	[0.0052-0.0122] unit decrease	NR [~ 27400000] (imputed)	N
797	chr17	27878029	27878029	rs5819871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q11.2	TAOK1	rs5819871-AAAG	NR	9E-13		0.020215	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
797	chr17	27878029	27878029	rs5819871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q11.2	TAOK1	rs5819871-AAAG	NR	8E-13		0.0202534	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
797	chr17	27878029	27878029	rs5819871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q11.2	TAOK1	rs5819871-AAAG	NR	4E-9		0.016802	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
797	chr17	27878029	27878029	rs5819871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q11.2	TAOK1	rs5819871-AAAG	NR	1E-9		0.0173943	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
797	chr17	27884666	27884667	rs56208742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q11.2	NR	rs56208742-C	NR	2E-11		0.046	[0.032-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr17	27884666	27884667	rs56208742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q11.2	NR	rs56208742-C	NR	2E-9		0.0415	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr17	27884666	27884667	rs56208742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q11.2	NR	rs56208742-C	NR	1E-9		0.0421	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr17	27884666	27884667	rs56208742	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q11.2	ABHD15	rs56208742-T	0.96873	2E-8		0.0334878	[0.022-0.045] unit increase	Affymetrix [NR] (imputed)	N
797	chr17	27884666	27884667	rs56208742	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q11.2	TBC1D29	rs56208742-?	NR	1E-11		0.0496	[0.037-0.063] unit decrease	Affymetrix [5701386] (imputed)	N
797	chr17	27889642	27889643	rs62070804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q11.2	ABHD15, RP11-68I3.2	rs62070804-T	NR	1E-14		0.0828112	[0.062-0.104] unit increase	Affymetrix [319769] (imputed)	N
797	chr17	27889642	27889643	rs62070804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q11.2	ABHD15, RP11-68I3.2	rs62070804-T	NR	2E-14		0.0822184	[0.061-0.103] unit increase	Affymetrix [319769] (imputed)	N
797	chr17	27889642	27889643	rs62070804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q11.2	ABHD15, RP11-68I3.2	rs62070804-T	NR	1E-8		0.0632953	[0.042-0.085] unit decrease	Affymetrix [321788] (imputed)	N
797	chr17	27889642	27889643	rs62070804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q11.2	NR	rs62070804-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
797	chr17	27889642	27889643	rs62070804	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q11.2	NR	rs62070804-T	0.0177	4E-10		0.0469	[0.032-0.062] unit increase	NR [~ 27400000] (imputed)	N
797	chr17	27889985	27889986	rs542939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	ABHD15, RP11-68I3.2	rs542939-T	NR	2E-12		0.0209801	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
797	chr17	27889985	27889986	rs542939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	ABHD15, RP11-68I3.2	rs542939-T	NR	2E-13		0.0238639	[0.018-0.03] unit decrease	Affymetrix [323123] (imputed)	N
797	chr17	27889985	27889986	rs542939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs542939-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
797	chr17	27889985	27889986	rs542939	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	ABHD15, ABHD15-AS1	rs542939-T	0.3462	3E-6		0.0313	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr17	27893544	27893545	rs141385558	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q11.2	NR	rs141385558-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
797	chr17	27912414	27912415	rs1017529	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q11.2	GIT1	rs1017529-C	0.825162	8E-9		0.0106224	[0.007-0.0142] unit decrease	Affymetrix [12370749]	N
797	chr17	27917770	27917771	rs3110496	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	ANKRD13B	rs3110496-A	0.33	7E-9		0.022	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
798	chr17	27935545	27935546	rs9911167	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q11.2		rs9911167-C	0.46	2E-83		19.36	z score increase	Affymetrix [9061022] (imputed)	N
798	chr17	27935545	27935546	rs9911167	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q11.2	NR	rs9911167-C	0.4597	1E-17				NR [9056863] (imputed)	N
798	chr17	27935545	27935546	rs9911167	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q11.2	NR	rs9911167-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
798	chr17	27935687	27935688	rs7220401	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q11.2	ANKRD13B, CORO6	rs7220401-T	0.522	5E-10		0.04	[0.028-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
798	chr17	27938423	27938424	rs11080107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	17q11.2		rs11080107-C	0.31339	2E-8		0.019314	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
798	chr17	27938423	27938424	rs11080107	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q11.2	ANKRD13B	rs11080107-?	NR	1E-11		0.0338341	[0.024-0.044] unit increase	Illumina [4804024] (imputed)	N
798	chr17	27938423	27938424	rs11080107	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q11.2	ANKRD13B, CORO6	rs11080107-T	0.5146	3E-10		0.0358	[0.025-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
798	chr17	27941885	27941886	rs13723	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs13723-?		2E-14				NR [7428630] (imputed)	N
798	chr17	27941885	27941886	rs13723	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	ABHD15, TP53I13, GIT1, ANKRD13B, CORO6, SSH2, EFCAB5, NSRP1, SLC6A4	rs13723-?		1E-28				NR [7428630] (imputed)	N
798	chr17	27941885	27941886	rs13723	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q11.2	ANKRD13B, CORO6	rs13723-A	0.5083	6E-10		0.0395	[0.027-0.052] unit decrease	NR [8041861] (imputed)	N
798	chr17	27945338	27945339	rs871014	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	NR	rs871014-?		4E-12				NR [7428630] (imputed)	N
798	chr17	27948843	27948844	rs3760456	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs3760456-?	NR	1E-9	(left transverse temporal)			NR [9227495] (imputed)	N
798	chr17	27948843	27948844	rs3760456	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q11.2	CORO6	rs3760456-C	0.557125	3E-29		0.021014	[0.017-0.025] unit increase	NR [13737936] (imputed)	N
798	chr17	27948843	27948844	rs3760456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs3760456-?	NR	3E-37				NR [~ 8900000] (imputed)	N
798	chr17	27948843	27948844	rs3760456	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs3760456-?	NR	3E-40		0.0268571	[0.023-0.031] unit increase	Affymetrix [20259828] (imputed)	N
798	chr17	27955097	27955097	rs3840872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q11.2	NR	rs3840872-I	0.478662	1E-18		0.018037	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
798	chr17	27955539	27955540	rs3809790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q11.2		rs3809790-T	NR	2E-10		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
798	chr17	27955539	27955540	rs3809790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs3809790-T	0.459385	2E-17				Affymetrix, Illumina [23472807] (imputed)	N
798	chr17	27955760	27955761	rs3809789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q11.2	SSH2	rs3809789-A	0.469686	4E-16		0.01801025	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
798	chr17	27957544	27957545	rs11654523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs11654523-?	NR	2E-23				NR [~ 8900000] (imputed)	N
798	chr17	27961561	27961567	rs138491296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q11.2	RP11-68I3.2, SSH2	rs138491296-G	0.4405	5E-10		0.02241701	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
798	chr17	27962196	27962197	rs55797987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs55797987-A	0.490905	2E-14				Affymetrix, Illumina [24653286] (imputed)	N
798	chr17	27964266	27964267	rs3110493	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs3110493-?	NR	3E-12	(right precuneus)			NR [9227495] (imputed)	N
798	chr17	27968973	27968974	rs1478797900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs1478797900-A	0.01045	2E-9	(CTSC)	0.02993	NR unit increase	Illumina [1671387] (imputed)	N
798	chr17	27968973	27968974	rs1478797900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs1478797900-A	0.01045	2E-8	(VAPA)	0.0552	NR unit increase	Illumina [1671387] (imputed)	N
798	chr17	27968973	27968974	rs1478797900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs1478797900-A	0.01045	1E-8	(HK1)	0.02272	NR unit increase	Illumina [1671387] (imputed)	N
798	chr17	27976596	27976597	rs3110494	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q11.2		rs3110494-G	0.49	4E-48		14.57	z score increase	Affymetrix [9061022] (imputed)	N
798	chr17	27976596	27976597	rs3110494	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q11.2	NR	rs3110494-G	0.4963	1E-17				NR [9056863] (imputed)	N
798	chr17	27976596	27976597	rs3110494	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs3110494-?	NR	5E-14	(left insula)			NR [9227495] (imputed)	N
798	chr17	27976596	27976597	rs3110494	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs3110494-?	NR	3E-12	(right insula)			NR [9227495] (imputed)	N
798	chr17	27978465	27978466	rs3097118	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q11.2		rs3097118-T	0.49	2E-53		15.4	z score increase	Affymetrix [9061022] (imputed)	N
798	chr17	27998384	27998385	rs3098950	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q11.2	NR	rs3098950-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
798	chr17	28015026	28015026	rs201740279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q11.2	RP11-68I3.2, SSH2	rs201740279-GT	0.489551	2E-15		0.01779516	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
798	chr17	28029937	28029938	rs3102560	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q11.2	EFCAB5	rs3102560-C		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
798	chr17	28034170	28034170	rs11370020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q11.2		rs11370020-CA	NR	1E-11		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
798	chr17	28044990	28044991	rs2002094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q11.2	NR	rs2002094-C	0.907579	4E-13		0.0135444	[0.0098-0.0173] unit increase	Affymetrix [16582621] (imputed)	N
798	chr17	28044990	28044991	rs2002094	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q11.2	NR	rs2002094-C	0.907579	9E-9		0.0117974	[0.0078-0.0158] unit increase	Affymetrix [16582614] (imputed)	N
799	chr17	28059969	28059970	rs880749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q11.2	SSH2	rs880749-T	0.473032	1E-53		0.03436499	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr17	28059969	28059970	rs880749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q11.2		rs880749-?	NR	7E-20				NR [~ 8900000] (imputed)	N
799	chr17	28064938	28064938	rs151317021	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs151317021-?	NR	1E-24		0.0210285	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
799	chr17	28065278	28065279	rs7210152	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs7210152-C	0.489511	2E-35				Affymetrix, Illumina [24649327] (imputed)	N
799	chr17	28065289	28065292	rs10568213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q11.2		rs10568213-G	NR	1E-31		0.0245	[0.02-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
799	chr17	28065577	28065578	rs4474742	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q11.2	SSH2	rs4474742-T	0.5179	2E-17		0.03032294	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
799	chr17	28070430	28070430	rs11395406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q11.2		rs11395406-GT	NR	2E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
799	chr17	28071878	28071880	rs71689248	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q11.2	SSH2	rs71689248-A	0.4378	3E-9		0.02253431	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
799	chr17	28072326	28072327	rs2244592	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q11.2	SSH2	rs2244592-A	0.4526	2E-14		0.0193	[0.014-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
799	chr17	28072326	28072327	rs2244592	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q11.2	SSH2	rs2244592-A	0.4526	5E-42		0.0323	[0.028-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
799	chr17	28072326	28072327	rs2244592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q11.2		rs2244592-?	NR	6E-55				NR [~ 8900000] (imputed)	N
799	chr17	28074562	28074563	rs1038088	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q11.2		rs1038088-G	0.52	3E-14				NR [NR] (imputed)	N
799	chr17	28074562	28074563	rs1038088	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	17q11.2		rs1038088-G	0.52	8E-6		0.008	mmol/L decrease	NR [NR] (imputed)	N
799	chr17	28074562	28074563	rs1038088	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q11.2		rs1038088-G	0.52	1E-15		0.012	% increase	NR [NR] (imputed)	N
799	chr17	28074562	28074563	rs1038088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q11.2	NA	rs1038088-T	0.4879	1E-12		0.0115	[0.0084-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
799	chr17	28088458	28088459	rs2729450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q11.2	NR	rs2729450-C	0.524171	1E-59		0.030635	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
799	chr17	28097779	28097780	rs2259857	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	17q11.2	SIX3	rs2259857-?		4E-12				NR [7428630] (imputed)	N
799	chr17	28097779	28097780	rs2259857	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	17q11.2	EIF2B5, ABCF3	rs2259857-?		2E-11				NR [7428630] (imputed)	N
799	chr17	28097859	28097860	rs2259855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q11.2	NR	rs2259855-C	0.52533	3E-37		0.023612	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
799	chr17	28120886	28120887	rs72823964	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	SSH2	rs72823964-T	0.1321	1E-24		0.0286	[0.023-0.034] unit increase	Affymetrix [18391927] (imputed)	N
799	chr17	28128656	28128657	rs2250320	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q11.2	NR	rs2250320-C	0.496329	9E-25		0.01979	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
799	chr17	28138799	28138800	rs62068615	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs62068615-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
799	chr17	28158764	28158764	rs150916102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q11.2		rs150916102-GT	NR	2E-16		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
799	chr17	28158814	28158815	rs12602426	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs12602426-C	0.490945	1E-22				Affymetrix, Illumina [23114412] (imputed)	N
799	chr17	28164262	28164263	rs8073217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q11.2		rs8073217-C	NR	6E-13		0.0119	[0.0088-0.015] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
799	chr17	28164262	28164263	rs8073217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q11.2		rs8073217-C	NR	1E-12		0.012	[0.0087-0.0153] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q11.2	SSH2	rs8073217-C	0.486599	7E-9		0.012855618	[0.0085-0.0172] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q11.2	SSH2	rs8073217-C	0.48661	2E-9		0.013294526	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q11.2	SSH2	rs8073217-C	0.486584	4E-9		0.013057702	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs8073217-C	0.5332	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q11.2	NR	rs8073217-C	0.490301	3E-12		0.013052	[0.0094-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs8073217-C	0.531161	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
799	chr17	28164262	28164263	rs8073217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q11.2	NR	rs8073217-C	0.490674	2E-10		0.011921	[0.0083-0.0156] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
799	chr17	28164262	28164263	rs8073217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q11.2		rs8073217-?	NR	1E-12				NR [~ 8900000] (imputed)	N
799	chr17	28169490	28169491	rs76515799	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q11.2	SSH2	rs76515799-G	0.460619	6E-32		0.026360817	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
800	chr17	28193120	28193121	rs34216701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA		SSH2	rs34216701-C	0.492079	6E-20		0.02040519	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
800	chr17	28195772	28195773	rs8080078	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	17q11.2		rs8080078-?	NR	5E-21				NR [9705931] (imputed)	N
800	chr17	28195772	28195773	rs8080078	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs8080078-?	NR	1E-26		0.0219377	[0.018-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
800	chr17	28222458	28222459	rs568201365	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q11.2	NR	rs568201365-?		3E-9	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
800	chr17	28222757	28222758	rs28715670	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q11.2		rs28715670-A	0.514	8E-13				Affymetrix [10369434] (imputed)	N
800	chr17	28243472	28243473	rs7210288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs7210288-G	0.495376	7E-59				Affymetrix, Illumina [23467995] (imputed)	N
800	chr17	28263979	28263980	rs62070270	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	17q11.2	EFCAB5	rs62070270-G	0.45	7E-18		0.034	[0.026-0.042] unit decrease	Affymetrix [27624732] (imputed)	N
800	chr17	28294279	28294280	rs74677442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q11.2	Intergenic	rs74677442-A	0.0474	4E-9	(MTAG)	0.0193	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
800	chr17	28296326	28296327	rs9897794	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	17q11.2	EFCAB5	rs9897794-G	0.48	2E-7		1.05	[1.03 -1.07]	Illumina [at least 109036]	N
800	chr17	28296326	28296327	rs9897794	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q11.2	EFCAB5	rs9897794-G		3E-8		0.012	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
801	chr17	28312992	28312993	rs55866125	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17q11.2	EFCAB5	rs55866125-T	0.52	3E-11		0.42	[0.3-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
801	chr17	28323614	28323615	rs146171833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs146171833-?	NR	1E-13				NR [~ 8900000] (imputed)	N
801	chr17	28338303	28338304	rs4291964	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q11.2	NR	rs4291964-A	0.4716	4E-12	(Insula)	8.128199	[5.84-10.42] unit decrease	Affymetrix, Illumina [NR]	N
801	chr17	28349094	28349095	rs9902453	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	17q11.2	EFCAB5, SSH2, CCDC55	rs9902453-A	0.54	3E-8		0.03	[0.01-0.05] unit decrease	Affymetrix, Illumina [2373958] (imputed)	N
801	chr17	28372571	28372572	rs78274378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q11.2	Intergenic	rs78274378-A	0.9101	3E-8	(MTAG)	0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
801	chr17	28410276	28410277	rs12951836	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		17q11.2	NR	rs12951836-G	0.507	2E-6		1.28	[1.15-1.41]	Illumina [~ 8000000] (imputed)	N
801	chr17	28413128	28413129	rs8080772	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs8080772-?	NR	6E-10	(right precuneus)			NR [9227495] (imputed)	N
801	chr17	28413128	28413129	rs8080772	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q11.2	EFCAB5	rs8080772-T	0.64	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
801	chr17	28433274	28433275	rs4310926	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	NR	rs4310926-?		5E-23				NR [7428630] (imputed)	N
801	chr17	28437051	28437052	rs60967688	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	17q11.2	NR	rs60967688-A	0.45	1E-9		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
801	chr17	28437051	28437052	rs60967688	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	17q11.2	NR	rs60967688-A	0.45	8E-9			[NR]	Affymetrix [9886854] (imputed)	N
801	chr17	28437051	28437052	rs60967688	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	17q11.2	NR	rs60967688-A	0.45	2E-9		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
802	chr17	28464473	28464474	rs4470197	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs4470197-?	NR	3E-11	(right precuneus)			NR [9227495] (imputed)	N
802	chr17	28471283	28471284	rs56397640	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs56397640-?	NR	9E-9	(right insula)			NR [9227495] (imputed)	N
802	chr17	28471283	28471284	rs56397640	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q11.2	NR	rs56397640-?	NR	2E-8	(left insula)			NR [9227495] (imputed)	N
802	chr17	28474933	28474934	rs56357032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs56357032-?	NR	6E-45				NR [~ 8900000] (imputed)	N
802	chr17	28485761	28485762	rs7211246	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q11.2	NSRP1, EFCAB5	rs7211246-?	NR	6E-9	(EA)	115.62	[76.66-154.58] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
802	chr17	28489042	28489043	rs200678690	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q11.2	NR	rs200678690-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
802	chr17	28489042	28489043	rs200678690	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q11.2	NR	rs200678690-?		4E-11	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
802	chr17	28516871	28516872	rs4795538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q11.2		rs4795538-T	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
802	chr17	28531257	28531258	rs3794809	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q11.2	EFCAB5	rs3794809-C	0.5584	3E-11		0.4463	[0.32-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
802	chr17	28535938	28535939	rs56124265	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	SLC6A4	rs56124265-T	0.0469	1E-6		0.0805	[0.048-0.113] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
802	chr17	28546913	28546914	rs2020942	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q11.2	NR	rs2020942-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
802	chr17	28546913	28546914	rs2020942	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q11.2	NR	rs2020942-T	0.3965	2E-9		0.0151581	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
802	chr17	28546913	28546914	rs2020942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q11.2		rs2020942-?	NR	4E-11				NR [~ 8900000] (imputed)	N
802	chr17	28553488	28553489	rs11872020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q11.2		rs11872020-?	NR	1E-9				NR [~ 8900000] (imputed)	N
802	chr17	28569083	28569083	rs5819889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	RP11-354P11.2	rs5819889-AT	NR	6E-10		0.03921	[0.027-0.052] unit decrease	Affymetrix [321114] (imputed)	N
803	chr17	28574176	28574177	rs7214248	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q11.2	intergenic	rs7214248-A	0.3149	7E-10		0.0153	[0.01-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
803	chr17	28583497	28583498	rs111919672	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q11.2	NR	rs111919672-C	0.916181	5E-13		0.0107727	[0.0079-0.0137] unit increase	Affymetrix [16582909] (imputed)	N
803	chr17	28583497	28583498	rs111919672	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q11.2	NR	rs111919672-C	0.916181	3E-8		0.00911262	[0.0058-0.0124] unit increase	Affymetrix [16582965] (imputed)	N
803	chr17	28632119	28632120	rs11291804	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q11.2	intergenic	rs11291804-?	0.4053	5E-9		0.0199	[0.013-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
803	chr17	28639660	28639661	rs57812147	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	TMIGD1	rs57812147-A	0.0659	2E-20		0.0354	[0.028-0.043] unit decrease	Affymetrix [18391927] (imputed)	N
803	chr17	28653773	28653774	rs2321706	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q11.2	NR	rs2321706-C	0.422	1E-8		0.00625167	[0.0041-0.0084] unit decrease	NR [9732723] (imputed)	N
803	chr17	28682452	28682453	rs9916613	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q11.2	TMIGD1	rs9916613-T	0.643352	3E-17		0.0173069	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
803	chr17	28682452	28682453	rs9916613	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	RNU6-990P	rs9916613-A	NR	5E-8		5.459	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
804	chr17	28720740	28720741	rs3794794	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q11.2	Intergenic	rs3794794-A	0.5413	5E-8		0.0124	[0.0079-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
804	chr17	28744261	28744262	rs116913103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs116913103-?	NR	1E-11				NR [~ 8900000] (imputed)	N
804	chr17	28749259	28749260	rs561089333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q11.2	NR	rs561089333-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
804	chr17	28781791	28781792	rs2011614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q11.2		rs2011614-A	NR	9E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
804	chr17	28781791	28781792	rs2011614	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q11.2	CPD	rs2011614-G	0.648958	4E-13		0.0144905	[0.011-0.018] unit increase	Affymetrix [NR] (imputed)	N
804	chr17	28797369	28797369	rs201275066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	CPD	rs201275066-ATG	NR	2E-8		0.0348413	[0.023-0.047] unit decrease	Affymetrix [323123] (imputed)	N
804	chr17	28812119	28812120	rs10512432	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	NR	rs10512432-?	NR	2E-7		5.224	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
804	chr17	28817493	28817494	rs17180371	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	17q11.2		rs17180371-?	NR	7E-9				Illumina [1128286]	N
805	chr17	28843029	28843030	rs6505191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q11.2	Intergenic	rs6505191-A	0.5052	3E-8	(MTAG)	0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
805	chr17	28859953	28859954	rs216466	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q11.2	Intergenic	rs216466-T	0.4436	5E-11	(MTAG)	0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
805	chr17	28863645	28863645	rs201608390	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17q11.2		rs201608390-ATGC	0.29708	7E-6		0.033576	[0.019-0.048] unit decrease	Affymetrix [15580782] (imputed)	N
805	chr17	28864381	28864382	rs216472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q11.2	Intergenic	rs216472-A	0.4889	3E-10	(MTAG)	0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
805	chr17	28878816	28878817	rs216450	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	17q11.2		rs216450-?	NR	6E-6		1.03194	[1.02-1.05]	NR [688737]	N
805	chr17	28883740	28883741	rs216452	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q11.2	NR	rs216452-T	NR	9E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
805	chr17	28887133	28887134	rs111780165	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q11.2	NR	rs111780165-A	0.0706	8E-8	(EA)	0.067	[0.043-0.092] unit decrease	Illumina [~ 11800000] (imputed)	N
805	chr17	28893166	28893167	rs8074306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q11.2	NR	rs8074306-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
805	chr17	28899613	28899614	rs17669584	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	17q11.2	LOC729704	rs17669584-G	0.19491000000000003	5E-8		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
805	chr17	28899613	28899614	rs17669584	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	17q11.2	LOC729704	rs17669584-G	0.19491000000000003	4E-8		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
805	chr17	28900914	28900915	rs58713975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q11.2		rs58713975-?	NR	5E-9				NR [~ 8900000] (imputed)	N
805	chr17	28941006	28941007	rs142816786	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	17q11.2		rs142816786-A	0.88	2E-8		0.042	L decrease	Affymetrix [NR] (imputed)	N
806	chr17	28972336	28972337	rs141020954	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	NR	rs141020954-?	NR	3E-6		4.692	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
806	chr17	28997871	28997872	rs142256814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	AC005562.1	rs142256814-T	NR	3E-8		0.0402117	[0.026-0.054] unit decrease	Affymetrix [321016] (imputed)	N
806	chr17	29012487	29012488	rs138044297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs138044297-?	NR	2E-12				NR [~ 8900000] (imputed)	N
806	chr17	29014969	29014970	rs7220770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	RN7SL316P	rs7220770-C	NR	1E-13		0.041992	[0.031-0.053] unit decrease	Affymetrix [321114] (imputed)	N
806	chr17	29016359	29016360	rs8081187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	RN7SL316P	rs8081187-A	NR	1E-9		0.0339758	[0.023-0.045] unit decrease	Affymetrix [323123] (imputed)	N
806	chr17	29016359	29016360	rs8081187	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs8081187-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
806	chr17	29016359	29016360	rs8081187	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q11.2	NR	rs8081187-A	0.0843	2E-7	(EA)	0.0607	[0.038-0.083] unit decrease	Illumina [~ 11800000] (imputed)	N
806	chr17	29016569	29016570	rs8081496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	RN7SL316P	rs8081496-C	NR	3E-11		0.0339491	[0.024-0.044] unit decrease	Affymetrix [321016] (imputed)	N
806	chr17	29019547	29019548	rs73267833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	RN7SL316P	rs73267833-A	NR	3E-8		0.0211897	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
806	chr17	29036424	29036425	rs180950758	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q11.2	SUZ12P1	rs180950758-T	0.182	3E-8	(Japanese)	0.027	[0.017-0.037] unit increase	Illumina [6108953] (imputed)	N
806	chr17	29037338	29037339	rs144843919	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	17q11.2	SUZ12P1, CRLF3	rs144843919-G	0.96	2E-9		0.0685	[0.046-0.091] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
806	chr17	29056337	29056338	rs1973252	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q11.2	CRLF3	rs1973252-G	0.82	7E-8	(conditional on rs8080772)	1.08	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
806	chr17	29056340	29056341	rs8069884	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q11.2		rs8069884-C	0.827	8E-9				Affymetrix [10369434] (imputed)	N
806	chr17	29073772	29073773	rs7504112	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	SUZ12P	rs7504112-C	NR	3E-8		0.0188704	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
806	chr17	29073772	29073773	rs7504112	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs7504112-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
806	chr17	29073772	29073773	rs7504112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs7504112-?	NR	5E-11				NR [~ 8900000] (imputed)	N
806	chr17	29079044	29079045	rs62070628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	SUZ12P	rs62070628-G	NR	4E-15		0.0318523	[0.024-0.04] unit decrease	Affymetrix [321114] (imputed)	N
806	chr17	29085757	29085758	rs55764512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q11.2	NR	rs55764512-A	0.117729	4E-13		0.020965	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
806	chr17	29087284	29087285	rs62070631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	SUZ12P	rs62070631-A	NR	4E-14		0.0305136	[0.023-0.038] unit decrease	Affymetrix [323123] (imputed)	N
806	chr17	29087284	29087285	rs62070631	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q11.2		rs62070631-?	NR	1E-6		20.16	[12.01-28.31] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
806	chr17	29087284	29087285	rs62070631	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q11.2	SUZ12P1	rs62070631-A	0.17	2E-6	(EA)	19.63	[11.55-27.71] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
806	chr17	29087284	29087285	rs62070631	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q11.2	SUZ12P1	rs62070631-A	0.15	3E-8		20.26	[13.13-27.39] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
806	chr17	29087611	29087612	rs146246379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	SUZ12P	rs146246379-A	NR	1E-8		0.0537968	[0.035-0.072] unit decrease	Affymetrix [321114] (imputed)	N
806	chr17	29094586	29094587	rs11310424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q11.2	SUZ12P	rs11310424-G	0.177404	6E-26		0.031694982	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
806	chr17	29096005	29096006	rs62070634	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs62070634-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
807	chr17	29098253	29098253	rs764786839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q11.2	CRLF3, SUZ12P	rs764786839-TA	0.163356	3E-12		0.021386137	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
807	chr17	29099265	29099266	rs80168287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q11.2		rs80168287-C	0.192014	5E-12		0.0316873	[0.023-0.041] unit increase	Illumina [13476266] (imputed)	N
807	chr17	29099265	29099266	rs80168287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	17q11.2		rs80168287-C	0.191956	2E-17		0.039368	[0.03-0.048] unit increase	Illumina [13476299] (imputed)	N
807	chr17	29103165	29103166	rs12946563	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	17q11.2	SUZ12P1, CRLF3	rs12946563-?	NR	6E-10		0.03811	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
807	chr17	29103738	29103739	rs113900126	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	SUZ12P1, CRLF3	rs113900126-A	0.3619	4E-8		0.0367	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
807	chr17	29111112	29111113	rs141870697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q11.2		rs141870697-?	NR	2E-10				NR [~ 8900000] (imputed)	N
807	chr17	29117622	29117624	rs377249930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q11.2	SUZ12P, CRLF3	rs377249930-C	NR	9E-11		0.0200993	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
807	chr17	29122477	29122478	rs9915567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	CRLF3	rs9915567-C	NR	4E-8		0.0172242	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
807	chr17	29126950	29126951	rs6505211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q11.2	CRLF3	rs6505211-A	0.176048	1E-24		0.030199805	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
807	chr17	29132191	29132192	rs7223373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	CRLF3	rs7223373-A	NR	4E-15		0.0289155	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
807	chr17	29136125	29136126	rs75270613	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	17q11.2	CRLF3	rs75270613-T		5E-6		0.832	[0.769-0.901]	Illumina [4498586] (imputed)	N
807	chr17	29137677	29137678	rs62070638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q11.2		rs62070638-G	NR	2E-8		0.0169	[0.011-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
807	chr17	29142164	29142165	rs564085990	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q11.2		rs564085990-A	0.01004	4E-6		3.013	[1.884-4.817]	Affymetrix [7975321] (imputed)	N
807	chr17	29157157	29157158	rs74815160	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q11.2	ATAD5, CTD-2349P21.1	rs74815160-T	0.2146	3E-9		0.02686886	[0.018-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
807	chr17	29161502	29161503	rs11080134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	ATAD5, CTD-2349P21.11	rs11080134-G	NR	2E-10		0.0185567	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
807	chr17	29161502	29161503	rs11080134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q11.2		rs11080134-?	NR	4E-8				NR [~ 8900000] (imputed)	N
807	chr17	29161502	29161503	rs11080134	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q11.2	ATAD5	rs11080134-A	0.6464	9E-10		0.0974	[0.066-0.129] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
807	chr17	29161844	29161845	rs17826219	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q11.2	ATAD5	rs17826219-A	0.09	3E-8		0.021	[0.013-0.029] unit increase	Illumina [6108953] (imputed)	N
807	chr17	29163590	29163591	rs117662433	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	ATAD5	rs117662433-A	0.036	5E-12		0.0354	[0.025-0.045] unit decrease	Affymetrix [18391927] (imputed)	N
807	chr17	29163590	29163591	rs117662433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q11.2	ATAD5, CTD-2349P21.11	rs117662433-A	0.035878	1E-14		0.046807114	[0.035-0.059] unit increase	Affymetrix [93095623] (imputed)	N
807	chr17	29164022	29164023	rs3764419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q11.2	ATAD5, CTD-2349P21.11	rs3764419-A	NR	4E-15		0.0230047	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
807	chr17	29164022	29164023	rs3764419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	ATAD5, CTD-2349P21.11	rs3764419-A	NR	9E-15		0.0245525	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q11.2	ATAD5	rs3764419-C	0.6093	5E-8	(EA)	0.021	[0.013-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q11.2	ATAD5	rs3764419-C	0.6093	4E-8	(EA, men)	0.0317	[0.02-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q11.2	ATAD5	rs3764419-C	0.61	4E-7	(EA, men)	0.0322	[0.02-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q11.2	ATAD5	rs3764419-C	0.6093	9E-6	(EA)	0.0195	[0.011-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q11.2	ATAD5	rs3764419-?	0.6093	2E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q11.2	ATAD5	rs3764419-?	0.6093	2E-6	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q11.2	ATAD5	rs3764419-C	0.61	9E-14		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
807	chr17	29164022	29164023	rs3764419	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	ATAD5/RNF135	rs3764419-A	0.39	2E-21		0.035	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
807	chr17	29165933	29165934	rs9890032	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	17q11.2	ATAD5, AC130324.2	rs9890032-?		8E-46				Illumina [9499600] (imputed)	N
807	chr17	29165933	29165934	rs9890032	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	17q11.2	ATAD5, AC130324.2	rs9890032-G	0.381	2E-71	(height)	0.0318	[0.028-0.035] unit decrease	Illumina [9499600] (imputed)	N
807	chr17	29165933	29165934	rs9890032	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	ATAD5	rs9890032-C	0.6113	8E-9	(EA,men)	0.0304	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
807	chr17	29165933	29165934	rs9890032	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	ATAD5	rs9890032-C	0.6113	3E-6	(EA, women)	0.0222	[0.013-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
807	chr17	29165933	29165934	rs9890032	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	ATAD5	rs9890032-C	0.6113	2E-12	(EA)	0.0262	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
807	chr17	29167234	29167235	rs9904753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	17q11.2	NR	rs9904753-A	0.825741	4E-10		0.034252	[0.024-0.045] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
807	chr17	29168076	29168077	rs79461387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q11.2	ATAD5, CTD-2349P21.11	rs79461387-T	0.263568	5E-16		0.020425659	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr17	29168076	29168077	rs79461387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q11.2	ATAD5, CTD-2349P21.11	rs79461387-T	0.2632	3E-9		0.02409434	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
807	chr17	29168077	29168078	rs75637630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q11.2	ATAD5, CTD-2349P21.11	rs75637630-C	0.2627	1E-9		0.02487386	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
807	chr17	29180995	29180996	rs62070645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q11.2		rs62070645-A	NR	9E-26		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
807	chr17	29181220	29181220	rs199661266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	ATAD5, CTD-2349P21.11	rs199661266-AT	NR	3E-23		0.0346387	[0.028-0.041] unit decrease	Affymetrix [321114] (imputed)	N
807	chr17	29181220	29181220	rs199661266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	ATAD5, CTD-2349P21.11	rs199661266-AT	NR	9E-26		0.0333691	[0.027-0.04] unit decrease	Affymetrix [321016] (imputed)	N
807	chr17	29181225	29181225	rs143663961	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	17q11.2	NR	rs143663961-A	0.72942	1E-7		1.0819896	[1.05072828447598-1.11418107368593]	Illumina [11595112] (imputed)	N
807	chr17	29190018	29190019	rs7342976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	ATAD5, CTD-2349P21.11	rs7342976-G	NR	5E-18		0.0251099	[0.019-0.031] unit decrease	Affymetrix [321016] (imputed)	N
807	chr17	29206420	29206421	rs6505216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q11.2		rs6505216-T	NR	4E-122		0.0477	[0.044-0.052] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
807	chr17	29206420	29206421	rs6505216	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	ATAD5	rs6505216-T	0.233	2E-101		0.0498	[0.045-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
807	chr17	29209274	29209274	rs551929459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q11.2	ATAD5	rs551929459-GA	0.112925	1E-34		0.043353528	[0.036-0.05] unit increase	Affymetrix [93095623] (imputed)	N
807	chr17	29210594	29210595	rs62070648	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q11.2	SUZ12P1	rs62070648-A	0.27	5E-15		0.0206	[0.016-0.026] unit increase	Affymetrix [19819130] (imputed)	N
807	chr17	29210594	29210595	rs62070648	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q11.2	SUZ12P1	rs62070648-A	0.27	2E-10		0.0167	[0.012-0.022] unit increase	Affymetrix [19819130] (imputed)	N
807	chr17	29210594	29210595	rs62070648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q11.2		rs62070648-?	NR	6E-27				NR [~ 8900000] (imputed)	N
807	chr17	29211666	29211667	rs7223535	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q11.2	ATAD5	rs7223535-A	NR	2E-13		0.0235335	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
807	chr17	29211666	29211667	rs7223535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs7223535-?	NR	1E-34				Affymetrix [~ 8270000] (imputed)	N
807	chr17	29211666	29211667	rs7223535	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q11.2	ATAD5	rs7223535-G	0.732042	2E-13		0.02138	[0.016-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
807	chr17	29211666	29211667	rs7223535	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs7223535-?	NR	1E-222				NR [~ 8900000] (imputed)	N
807	chr17	29211666	29211667	rs7223535	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q11.2	NR	rs7223535-?	NR	3E-16	(female)	0.2209	[0.17-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
807	chr17	29211666	29211667	rs7223535	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q11.2	NR	rs7223535-?	NR	3E-15	(male)	0.30854	[0.23-0.39] unit decrease	Affymetrix [7794483] (imputed)	N
807	chr17	29211666	29211667	rs7223535	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q11.2	NR	rs7223535-?	NR	2E-27		0.26902	[0.22-0.32] unit decrease	Affymetrix [7794483] (imputed)	N
807	chr17	29211666	29211667	rs7223535	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q11.2	NR	rs7223535-A	0.268	4E-10	(EA)	0.0439	[0.03-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
807	chr17	29214879	29214880	rs113934718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	17q11.2		rs113934718-A	NR	1E-8		0.072	[0.047-0.097] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
807	chr17	29214879	29214880	rs113934718	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17q11.2	ATAD5	rs113934718-A	0.271	3E-7		0.0398	[0.025-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
807	chr17	29221276	29221277	rs62070652	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	17q11.2		rs62070652-?	NR	1E-6		0.922689	[0.89-0.96]	NR [682398]	N
807	chr17	29221276	29221277	rs62070652	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q11.2		rs62070652-C	NR	6E-9		1.066	[1.043-1.089]	Affymetrix [7846216] (imputed)	N
807	chr17	29221276	29221277	rs62070652	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	17q11.2		rs62070652-C	NR	6E-9		1.0768	NR	Affymetrix [7846216] (imputed)	N
807	chr17	29223581	29223582	rs140040369	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	17q11.2	ATAD5	rs140040369-C	0.985976593	7E-6		1.4697365	[1.24-1.74]	Illumina [10439017] (imputed)	N
807	chr17	29228383	29228384	rs117723720	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	TEFM	rs117723720-T	0.0299	5E-7		0.1084	[0.066-0.151] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr17	29230520	29230522	rs146699004	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	17q11.2		rs146699004-G	NR	6E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
808	chr17	29230520	29230522	rs146699004	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q11.2	ATAD5	rs146699004-GGT	0.73	2E-9	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
808	chr17	29236305	29236306	rs73265633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	17q11.2	NR	rs73265633-G	0.812073	9E-13		0.037448	[0.027-0.048] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
808	chr17	29236744	29236745	rs35958868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	ADAP2	rs35958868-A	NR	6E-22		0.0334064	[0.027-0.04] unit decrease	Affymetrix [323123] (imputed)	N
808	chr17	29236744	29236745	rs35958868	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	ADAP2	rs35958868-A	0.2662	9E-15		0.0603	[0.045-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
808	chr17	29241037	29241038	rs57432042	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	17q11.2	TEFM	rs57432042-T	0.8982	5E-8		0.0905	[0.058-0.123] unit decrease	NR [9744772] (imputed)	N
808	chr17	29243401	29243402	rs117870634	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q11.2	NR	rs117870634-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	ADAP2	rs3760318-A	NR	1E-17		0.0272421	[0.021-0.033] unit decrease	Affymetrix [321114] (imputed)	N
808	chr17	29247714	29247715	rs3760318	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17q11.2		rs3760318-A	0.3748	6E-10		0.14500682	[0.1-0.19] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
808	chr17	29247714	29247715	rs3760318	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17q11.2		rs3760318-A	0.3747	6E-14		0.10561954	[0.078-0.134] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
808	chr17	29247714	29247715	rs3760318	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q11.2	NR	rs3760318-?	NR	2E-6		0.02830497	[0.017-0.04] unit decrease	Illumina [34656550] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	7E-7	(men)	0.0291	[0.018-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	4E-6		0.0192	[0.011-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	7E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	6E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	7E-8		0.0199	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q11.2	CENTA2	rs3760318-A	0.3801	1E-7	(men)	0.0268	[0.017-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
808	chr17	29247714	29247715	rs3760318	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	CENTA2	rs3760318-A	0.3756	9E-10	(EA)	0.0213	[0.014-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
808	chr17	29247714	29247715	rs3760318	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	CENTA2	rs3760318-A	0.3756	8E-8	(EA, men)	0.0263	[0.017-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
808	chr17	29247714	29247715	rs3760318	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q11.2	CENTA2	rs3760318-A	0.374	3E-41		0.041	[0.035-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
808	chr17	29247714	29247715	rs3760318	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q11.2	CRLF3, ATAD5, CENTA2, RNF135	rs3760318-C	0.63	2E-9		6.0	[4.04-7.96] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
808	chr17	29259898	29259899	rs7225461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q11.2		rs7225461-?	NR	9E-9				NR [~ 8900000] (imputed)	N
808	chr17	29262772	29262773	rs7208859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q11.2		rs7208859-C	NR	4E-36		0.0345	[0.029-0.04] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
808	chr17	29262772	29262773	rs7208859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q11.2	ADAP2	rs7208859-C	0.149663	3E-29		0.035599433	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
808	chr17	29262772	29262773	rs7208859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q11.2	ADAP2	rs7208859-C	0.149718	3E-22		0.03098776	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
808	chr17	29262772	29262773	rs7208859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q11.2	ADAP2	rs7208859-C	0.149658	2E-43		0.0440593	[0.038-0.05] unit increase	Affymetrix [93095623] (imputed)	N
808	chr17	29262772	29262773	rs7208859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs7208859-C	0.169578	7E-63				Affymetrix, Illumina [24246363] (imputed)	N
808	chr17	29262772	29262773	rs7208859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q11.2	NR	rs7208859-C	0.150587	1E-58		0.041574	[0.037-0.047] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
808	chr17	29262772	29262773	rs7208859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q11.2		rs7208859-?	NR	2E-45				NR [~ 8900000] (imputed)	N
808	chr17	29262772	29262773	rs7208859	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q11.2	ADAP2	rs7208859-C	0.1503	1E-19		0.04529494	[0.035-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
808	chr17	29262772	29262773	rs7208859	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q11.2	ADAP2	rs7208859-C	0.1503	1E-18		0.04431005	[0.034-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
808	chr17	29263699	29263700	rs8067252	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	17q11.2	NR	rs8067252-T	0.202276	4E-8		0.0142	[0.0091-0.0193] unit decrease	Affymetrix [23037915] (imputed)	N
808	chr17	29318793	29318794	rs62068776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q11.2	RNF135	rs62068776-C	NR	3E-16		0.028075	[0.021-0.035] unit decrease	Affymetrix [321114] (imputed)	N
808	chr17	29318793	29318794	rs62068776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	RNF135	rs62068776-C	NR	6E-19		0.0278173	[0.022-0.034] unit decrease	Affymetrix [321016] (imputed)	N
808	chr17	29318793	29318794	rs62068776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	RNF135	rs62068776-C	NR	2E-13		0.0252106	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
808	chr17	29325623	29325624	rs79533578	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	17q11.2		rs79533578-?	NR	4E-6	(MLM)	0.5676763	[0.33-0.81] unit increase	Illumina [~ 9000000] (imputed)	N
808	chr17	29333515	29333516	rs17826255	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17q11.2	LOC646021	rs17826255-?	0.067	8E-9			[NR]	Affymetrix, Illumina [152234]	N
808	chr17	29336744	29336745	rs9901616	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of medical pain (dental)	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	17q11.2	NR	rs9901616-T	0.03	8E-7		2.31	unit decrease	Illumina [8591557] (imputed)	N
809	chr17	29379918	29379919	rs115745246	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs115745246-T	0.01045	4E-9	(ALDH5A1)	0.3332	NR unit increase	Illumina [1671387] (imputed)	N
809	chr17	29389025	29389026	rs28623270	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	RP11-848P1.9	rs28623270-T	NR	7E-9		0.0253181	[0.017-0.034] unit increase	Affymetrix [323123] (imputed)	N
809	chr17	29390670	29390671	rs60642411	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q11.2	NR	rs60642411-A	NR	5E-8		0.019	[0.012-0.026] unit increase	Affymetrix [10847151] (imputed)	N
809	chr17	29395745	29395746	rs11657989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q11.2	NR	rs11657989-A	NR	2E-9		0.0202	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
809	chr17	29398007	29398008	rs12945708	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	NF1, OMG, EVI2B, CTD-2370N5.3, EVI2A, RAB11FIP4	rs12945708-?		4E-10				NR [7428630] (imputed)	N
809	chr17	29413018	29413019	rs71372253	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q11.2	NF1	rs71372253-C	0.0642	4E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
809	chr17	29445956	29445956	rs35974893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	NF1	rs35974893-C	NR	1E-10		0.0198542	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
809	chr17	29445956	29445956	rs35974893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	NF1	rs35974893-C	NR	3E-15		0.0265784	[0.02-0.033] unit increase	Affymetrix [323123] (imputed)	N
809	chr17	29461524	29461525	rs72813607	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	17q11.2	NF1, OMG, EVI2B	rs72813607-?	NR	3E-10		0.00312984	[-0.0038-0.01006] unit decrease	Affymetrix [25921788] (imputed)	N
809	chr17	29461524	29461525	rs72813607	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	17q11.2	NF1, OMG, EVI2B	rs72813607-?	NR	3E-10		0.0222531	[0.015-0.029] unit increase	Affymetrix [25921788] (imputed)	N
809	chr17	29466721	29466722	rs12603885	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q11.2	NF1	rs12603885-G	0.300292	1E-14		0.0175036	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
809	chr17	29466721	29466722	rs12603885	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q11.2	NF1	rs12603885-G	0.300273	1E-17		0.0193987	[0.015-0.024] unit decrease	Affymetrix [NR] (imputed)	N
809	chr17	29466721	29466722	rs12603885	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q11.2	NF1	rs12603885-?	NR	3E-14		0.0213	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
810	chr17	29492775	29492776	rs143119709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs143119709-?	NR	1E-9				NR [~ 8900000] (imputed)	N
810	chr17	29496342	29496343	rs2953013	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	17q11.2	NR	rs2953013-C	0.3	3E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
810	chr17	29519994	29519995	rs2905804	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q11.2	NF1	rs2905804-T	0.2823	6E-19		0.019181518	[0.015-0.023] unit decrease	Illumina [9339358] (imputed)	N
810	chr17	29524973	29524974	rs2905801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q11.2	NR	rs2905801-T	0.705531	4E-19		0.02876	[0.022-0.035] unit increase	Affymetrix [16577313] (imputed)	N
810	chr17	29524973	29524974	rs2905801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q11.2	NR	rs2905801-T	0.705069	1E-28		0.0129441	[0.011-0.015] unit increase	Affymetrix [16582621] (imputed)	N
810	chr17	29524973	29524974	rs2905801	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q11.2	NR	rs2905801-T	0.705069	4E-28		0.0140121	[0.011-0.017] unit increase	Affymetrix [16582614] (imputed)	N
810	chr17	29530875	29530876	rs72813627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q11.2	NR	rs72813627-A	NR	1E-9		0.0224	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
810	chr17	29530875	29530876	rs72813627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q11.2	NR	rs72813627-A	NR	2E-10		0.0224	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
810	chr17	29530875	29530876	rs72813627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q11.2	NR	rs72813627-A	NR	5E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
810	chr17	29546542	29546543	rs148176174	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	17q11.2	NF1	rs148176174-T	0.008	1E-6		4.6	[2.48-8.52]	Illumina [7959153] (imputed)	N
810	chr17	29546764	29546765	rs17884466	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q11.2	NF1	rs17884466-A	0.133499	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
810	chr17	29566574	29566575	rs9913470	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17q11.2	NR	rs9913470-A	0.803204	5E-15		0.0138148	[0.01-0.017] unit increase	Affymetrix [16578495] (imputed)	N
810	chr17	29571194	29571195	rs9893872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q11.2		rs9893872-A	NR	2E-17		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
810	chr17	29609320	29609321	rs150700179	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q11.2	OMG, ENSG00000232103	rs150700179-G	8.0086736102742E-6	3E-6		0.374	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
810	chr17	29616515	29616516	rs72815624	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17q11.2	NF1	rs72815624-T	0.132	2E-19		0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
811	chr17	29623287	29623288	rs11080149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q11.2	NR	rs11080149-T	NR	1E-9		0.0223	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
811	chr17	29623287	29623288	rs11080149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q11.2	NR	rs11080149-T	NR	8E-11		0.0227	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
811	chr17	29628548	29628549	rs2040792	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q11.2	NR	rs2040792-A	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
811	chr17	29628548	29628549	rs2040792	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q11.2	NR	rs2040792-C	0.461	2E-15		0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
811	chr17	29629325	29629326	rs11080150	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q11.2	NR	rs11080150-?		9E-9				NR [7428630] (imputed)	N
811	chr17	29629325	29629326	rs11080150	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17q11.2	NF1	rs11080150-G	NR	7E-14		0.015775386	[0.012-0.02] unit decrease	Illumina [242289]	N
811	chr17	29629325	29629326	rs11080150	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	17q11.2	NR	rs11080150-G	0.31	5E-10		0.02	unit decrease	Illumina [242289]	N
811	chr17	29629325	29629326	rs11080150	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	17q11.2	NR	rs11080150-G	0.3	1E-7		0.018	unit decrease	Illumina [242289]	N
811	chr17	29630969	29630970	rs3087591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	NF1	rs3087591-A	0.6978	2E-8	(EA)	0.0212	[0.014-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
811	chr17	29637307	29637308	rs12602834	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q11.2	NR	rs12602834-G	0.3912	7E-10		0.0289	[0.02-0.038] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
811	chr17	29639262	29639263	rs4368212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q11.2		rs4368212-T	NR	1E-14		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
811	chr17	29639324	29639325	rs4638642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q11.2	MultipleGene:EVI2B, NF1	rs4638642-G	0.39	1E-13		7.42	z-score increase	Affymetrix [4314223] (imputed)	N
811	chr17	29640678	29640679	rs17882020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17q11.2		rs17882020-A	NR	3E-10		0.0485	[0.033-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
811	chr17	29642429	29642430	rs7502556	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	17q11.2	NF1	rs7502556-T	0.535	4E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
811	chr17	29646031	29646032	rs1129506	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	17q11.2	EVI2A, NF1	rs1129506-G	0.38033399999999995	1E-7		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
811	chr17	29646031	29646032	rs1129506	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	17q11.2	EVI2A, NF1	rs1129506-G	0.38	4E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
811	chr17	29648731	29648732	rs547262783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q11.2		rs547262783-G	NR	3E-8		0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
811	chr17	29659591	29659592	rs7503951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs7503951-?	NR	6E-23				NR [~ 8900000] (imputed)	N
811	chr17	29666587	29666588	rs2525565	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17q11.2	NR	rs2525565-C	0.619	6E-11		0.00885905	[0.0062-0.0115] unit increase	NR [~ 9732723] (imputed)	N
811	chr17	29673218	29673219	rs2854313	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	17q11.2		rs2854313-A	0.381133092	3E-8		0.9530285	[0.937024209-0.969306161]	Illumina [8919992] (imputed)	N
811	chr17	29675877	29675878	rs2525568	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q11.2		rs2525568-T	0.385	2E-12				Affymetrix [10369434] (imputed)	N
811	chr17	29680517	29680518	rs772036060	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	17q11.2	NF1	rs772036060-A	0.0012	2E-7		1.7133	[1.06-2.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
811	chr17	29680525	29680526	rs12943365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q11.2		rs12943365-G	NR	8E-12		0.0432	[0.031-0.056] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
811	chr17	29680525	29680526	rs12943365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q11.2	NF1	rs12943365-C	0.389902	9E-19		0.020459594	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
811	chr17	29680525	29680526	rs12943365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q11.2	NR	rs12943365-G	0.6091960000000001	6E-30		0.00923255	[0.0076-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
811	chr17	29680525	29680526	rs12943365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q11.2	NR	rs12943365-G	0.6091960000000001	6E-31		0.0104986	[0.0087-0.0123] unit increase	Affymetrix [16582965] (imputed)	N
811	chr17	29680525	29680526	rs12943365	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17q11.2	NF1	rs12943365-G	0.6109	2E-7		0.0054	[0.0034-0.0074] unit increase	Affymetrix [~ 7740000] (imputed)	N
811	chr17	29681244	29681245	rs2525570	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	17q11.2	NF1	rs2525570-?	0.3949	7E-10		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
811	chr17	29681244	29681245	rs2525570	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q11.2	NR	rs2525570-G	0.6008910000000001	1E-9		0.0072085	[0.0048-0.0096] unit increase	Affymetrix [16585854] (imputed)	N
811	chr17	29681244	29681245	rs2525570	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q11.2	NR	rs2525570-G	0.6008910000000001	4E-10		0.00877397	[0.006-0.0116] unit increase	Affymetrix [16585866] (imputed)	N
811	chr17	29685149	29685150	rs3815156	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q11.2	NF1	rs3815156-A	0.82365	2E-8		0.010306	[0.0067-0.0139] unit decrease	Affymetrix [12370749]	N
811	chr17	29690454	29690455	rs552761103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q11.2	NF1	rs552761103-C	0.547557	4E-12		0.016342651	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
811	chr17	29690454	29690455	rs552761103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q11.2	NF1	rs552761103-C	0.547565	1E-19		0.02137663	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
811	chr17	29693939	29693940	rs188460661	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	17q11.2	NF1	rs188460661-A	0.008	1E-6		4.63	[2.50-8.59]	Illumina [7959153] (imputed)	N
811	chr17	29699415	29699416	rs2854322	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	17q11.2	NR	rs2854322-?	NR	1E-7				NR [1800000]	N
811	chr17	29699415	29699416	rs2854322	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q11.2	NR	rs2854322-T	NR	5E-9		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
811	chr17	29699415	29699416	rs2854322	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q11.2	NR	rs2854322-T	NR	4E-7		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
811	chr17	29707520	29707521	rs61296342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q11.2	NF1	rs61296342-A	0.549699	9E-12		0.015838439	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
811	chr17	29708154	29708155	rs8067440	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	17q11.2	NR	rs8067440-A	0.6193	2E-8		0.01177361	[0.0076-0.0159] unit increase	Affymetrix [10613246] (imputed)	N
811	chr17	29708154	29708155	rs8067440	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	17q11.2	NR	rs8067440-A	0.609	4E-9		0.010402472	[0.0069-0.0139] unit increase	Affymetrix [NR] (imputed)	N
811	chr17	29711013	29711014	rs9899998	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	17q11.2		rs9899998-?	NR	8E-7		0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
811	chr17	29711013	29711014	rs9899998	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	17q11.2		rs9899998-?	NR	8E-7		0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
811	chr17	29712377	29712378	rs2854332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q11.2		rs2854332-T	NR	2E-13		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
811	chr17	29712377	29712378	rs2854332	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q11.2	NF1	rs2854332-A	0.6993	2E-25		0.0216	[0.017-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
811	chr17	29715499	29715500	rs2854334	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	17q11.2	NR	rs2854334-G	0.615	8E-10		0.009220984	[0.0063-0.0122] unit increase	NR [~ 10000000] (imputed)	N
811	chr17	29719438	29719439	rs140529657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs140529657-?	NR	4E-8				NR [~ 8900000] (imputed)	N
811	chr17	29722999	29723000	rs731758	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q11.2	RAB11FIP4	rs731758-C	0.382113	6E-10		0.0125618	[0.0086-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
811	chr17	29723345	29723346	rs734403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q11.2		rs734403-C	NR	4E-14		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
811	chr17	29735828	29735829	rs9912537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q11.2	RAB11FIP4	rs9912537-G	NR	8E-12		0.0212698	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
811	chr17	29738070	29738071	rs6505239	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q11.2	RAB11FIP4	rs6505239-A	0.1348	2E-12		0.020031037	[0.014-0.026] unit decrease	Illumina [9339358] (imputed)	N
812	chr17	29792923	29792924	rs8070223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q11.2	RAB11FIP4	rs8070223-A	NR	2E-8		0.0252397	[0.016-0.034] unit increase	Affymetrix [321016] (imputed)	N
812	chr17	29802831	29802831	rs397703926	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q11.2	NR	rs397703926-T	0.01045	2E-9	(ALDH5A1)	0.2825	NR unit increase	Illumina [1671387] (imputed)	N
812	chr17	29818257	29818258	rs7215205	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q11.2		rs7215205-T	0.35	2E-12		7.07	z score increase	Affymetrix [9061022] (imputed)	N
812	chr17	29818257	29818258	rs7215205	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q11.2		rs7215205-T	0.35	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
812	chr17	29819148	29819149	rs4239232	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs4239232-?	NR	5E-28		0.0235651	[0.019-0.028] unit increase	Affymetrix [20259828] (imputed)	N
812	chr17	29819148	29819149	rs4239232	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q11.2	RAB11FIP4	rs4239232-T	0.369619	4E-10		0.0225987	[0.016-0.029] unit increase	NR [17166351] (imputed)	N
812	chr17	29819148	29819149	rs4239232	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q11.2	RAB11FIP4	rs4239232-T	0.369499	7E-9	(women)	0.0291822	[0.02-0.039] unit increase	NR [17166351] (imputed)	N
812	chr17	29819884	29819884	rs11422116	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs11422116-?	NR	3E-28		0.0238879	[0.02-0.028] unit increase	Affymetrix [20259828] (imputed)	N
812	chr17	29827428	29827429	rs2097719	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q11.2	RAB11FIP4	rs2097719-G	0.392587	1E-16		0.0160911	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
812	chr17	29827428	29827429	rs2097719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs2097719-?	NR	1E-25				NR [~ 8900000] (imputed)	N
812	chr17	29856941	29856942	rs2074151	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (male raters)	1,792 European ancestry male individuals	NA	17q11.2	RAB11FIP4	rs2074151-A	0.239	2E-7		0.261	[0.16-0.36] unit increase	Illumina [7251583] (imputed)	N
813	chr17	29884416	29884417	rs4794895	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q11.2	NR	rs4794895-T	0.4576	2E-8				NR [9056863] (imputed)	N
813	chr17	29885216	29885217	rs56161228	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	17q11.2	RAB11FIP4	rs56161228-A	NR	3E-10		0.21	[0.15-0.27] unit decrease	Affymetrix [7701190] (imputed)	N
813	chr17	29886355	29886356	rs112797972	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q11.2		rs112797972-?	NR	2E-22		0.0238489	[0.019-0.029] unit increase	Affymetrix [20259828] (imputed)	N
813	chr17	29890807	29890808	rs11870603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs11870603-?	NR	3E-21				NR [~ 8900000] (imputed)	N
813	chr17	29891428	29891429	rs62063930	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q11.2	MIR193A	rs62063930-G	0.856532	1E-9		0.016378	[0.011-0.022] unit increase	NR [13737936] (imputed)	N
813	chr17	29917727	29917731	rs200516199	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	17q11.2	MIR365-2	rs200516199-?	NR	3E-7		7.71	3.54-16.78	Illumina [~ 18000000] (imputed)	N
813	chr17	29928082	29928083	rs223154	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x carrot consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	17q11.2		rs223154-T	NR	2E-6		0.1445	[0.085-0.204] unit decrease	Illumina [285387]	N
813	chr17	29937765	29937766	rs147209203	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	17q11.2		rs147209203-?	NR	8E-6		0.9268718	[0.52-1.33] unit decrease	Illumina [9901720] (imputed)	N
813	chr17	29958055	29958056	rs426810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q11.2		rs426810-?	NR	7E-9				NR [~ 8900000] (imputed)	N
814	chr17	30023644	30023645	rs11658518	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	17q11.2		rs11658518-T	0.773358	3E-8		0.0501703	[0.033-0.068] increase	Affymetrix [NR]	N
814	chr17	30031937	30031938	rs441695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs441695-?	NR	3E-8				NR [~ 8900000] (imputed)	N
814	chr17	30032419	30032420	rs1551355	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q11.2	RP11-805L22.1	rs1551355-T	0.2341	2E-11		0.1932	[0.14-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
814	chr17	30033513	30033514	rs76954792	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q11.2	MIR365B, COPRS	rs76954792-?	NR	1E-10		0.0414063	[0.029-0.054] unit increase	Illumina [4804024] (imputed)	N
814	chr17	30033513	30033514	rs76954792	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q11.2	intergenic	rs76954792-T	0.2197	1E-8		0.0393	[0.026-0.053] unit increase	Affymetrix [at least 7947838] (imputed)	N
814	chr17	30033513	30033514	rs76954792	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q11.2	intergenic	rs76954792-T	0.219	2E-8		0.043	[0.027-0.059] unit increase	Affymetrix [7947838] (imputed)	N
814	chr17	30035909	30035910	rs315493	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q11.2	COPRS, RAB11FIP4	rs315493-G	0.741556	6E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
814	chr17	30057408	30057409	rs9907690	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q11.2	NR	rs9907690-A	0.216398	4E-8		0.0205939	[0.013-0.028] unit decrease	NR [19129689] (imputed)	N
814	chr17	30086320	30086321	rs73988456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q11.2		rs73988456-T	NR	6E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
814	chr17	30087299	30087300	rs4795641	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q11.2	C17orf79	rs4795641-T	0.4935	4E-9		0.114	[0.076-0.152] mmHg increase	Affymetrix [NR] (imputed)	N
814	chr17	30088119	30088120	rs146446983	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	17q11.2	MIR365-2, C17orf79	rs146446983-C	0.02	7E-7		2.59	[1.61-3.57] unit increase	Illumina [8437147] (imputed)	N
814	chr17	30092897	30092898	rs4795646	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q11.2	NR	rs4795646-G	NR	2E-11		1.057	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
814	chr17	30098748	30098749	rs142444269	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q11.2	RP11-805L22.3	rs142444269-C	0.78	3E-10		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
814	chr17	30129003	30129004	rs148283070	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	17q11.2	COPRS	rs148283070-G	0.034	8E-9		34.15	[22.54-45.76] unit increase	Illumina [4962728] (imputed)	N
815	chr17	30150415	30150416	rs149802391	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	17q11.2	NR	rs149802391-C	0.025	4E-6		0.91	[0.52-1.3] unit increase	Illumina [9469131] (imputed)	N
815	chr17	30177967	30177968	rs141572980	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	17q11.2	NR	rs141572980-?	NR	6E-7		0.06670262	[0.041-0.093] unit increase	Illumina [7519308] (imputed)	N
815	chr17	30198243	30198244	rs7210082	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type) in genotoxic compound exposure	321 European and unknown ancestry cases, 286 European and unknown ancestry controls	NA	17q11.2	COPRS, UTP6, RHOT1	rs7210082-?	NR	8E-6		2.2727273	[1.59-3.33]	Illumina [> 2600000] (imputed)	N
815	chr17	30229901	30229902	rs886224	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	17q11.2	NR	rs886224-G	NR	1E-6		0.01353	[0.008-0.019] unit increase	Illumina [~ 540852]	N
815	chr17	30234847	30234848	rs7209766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs7209766-?	NR	1E-27				NR [~ 8900000] (imputed)	N
815	chr17	30237284	30237284	rs201233223	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q11.2	NR	rs201233223-?		3E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
815	chr17	30257164	30257165	rs112076008	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	321 European and unknown ancestry genotoxic compound-exposed cases, 286 European and unknown ancestry genotoxic compound-exposed controls, 333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	17q11.2	SUZ12, RHOT1, COPRS	rs112076008-?	NR	5E-6		1.6393442	[NR]	Illumina [> 2600000] (imputed)	N
816	chr17	30316384	30316385	rs561341	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	SUZ12	rs561341-T	0.8551	8E-7	(EA,men)	0.0355	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
816	chr17	30316384	30316385	rs561341	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q11.2	SUZ12	rs561341-T	0.8551	3E-10	(EA)	0.0313	[0.022-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
816	chr17	30330203	30330203	rs112099669	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q11.2	RP11-640N20.1	rs112099669-CGGT	0.1138	4E-6		0.054	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
816	chr17	30343281	30343282	rs17780086	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q11.2	LRRC37B	rs17780086-A	0.15	3E-8		0.028	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
816	chr17	30344580	30344581	rs6505274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q11.2		rs6505274-?	NR	5E-9				NR [~ 8900000] (imputed)	N
816	chr17	30367189	30367190	rs28649357	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	17q11.2	LRRC37B	rs28649357-G	0.14	8E-6		2.61	[2.20-3.02]	Illumina [7033776] (imputed)	N
816	chr17	30375697	30375698	rs2957920	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q11.2		rs2957920-C	0.15	3E-8		5.52	z score increase	Affymetrix [9061022] (imputed)	N
817	chr17	30426276	30426277	rs72825751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs72825751-?	NR	8E-16				NR [~ 8900000] (imputed)	N
817	chr17	30429813	30429814	rs7212062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	RP11-640N20.9	rs7212062-G	0.185718	6E-17		0.023931516	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr17	30463884	30463885	rs72483203	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17q11.2	MYO1D-TMEM98	rs72483203-A	0.17	9E-6	(Asian ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
817	chr17	30463884	30463885	rs72483203	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17q11.2	MYO1D-TMEM98	rs72483203-A	0.09	9E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
817	chr17	30463884	30463885	rs72483203	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17q11.2	MYO1D-TMEM98	rs72483203-A	0.06	5E-10	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
817	chr17	30495352	30495353	rs148224886	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	17q11.2	NR	rs148224886-T	0.021	1E-6		1.06	[0.63-1.49] unit increase	Illumina [9469131] (imputed)	N
817	chr17	30535855	30535856	rs17780304	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q11.2	RHOT1	rs17780304-A	0.0060	6E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
818	chr17	30544238	30544239	rs7216187	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q11.2	NR	rs7216187-?	NR	8E-8				Affymetrix [NR]	N
818	chr17	30571411	30571412	rs8074331	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs8074331-A	NR	3E-8		0.9589		Affymetrix [9869154] (imputed)	N
818	chr17	30571411	30571412	rs8074331	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		RHOT1, RHBDL3	rs8074331-A	NR	7E-10		0.98	[0.97-0.99]	Affymetrix [9869154] (imputed)	N
818	chr17	30587801	30587802	rs1964662	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	17q11.2	NR	rs1964662-C	0.4055	5E-6		0.1408	[0.081-0.201] unit increase	Illumina [10677593] (imputed)	N
818	chr17	30588263	30588264	rs726502	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q11.2	NR	rs726502-?	NR	4E-20				Affymetrix [NR]	N
818	chr17	30599554	30599555	rs9915731	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q11.2		rs9915731-A	0.2703	3E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
818	chr17	30603993	30603994	rs12950382	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q11.2	RHBDL3	rs12950382-A	0.7198	5E-8		1.0236759		Affymetrix [11880941] (imputed)	N
818	chr17	30609931	30609932	rs28661492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q11.2		rs28661492-T	NR	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
818	chr17	30609931	30609932	rs28661492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q11.2		rs28661492-T	NR	2E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
818	chr17	30635114	30635115	rs62064224	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q11.2	NR	rs62064224-G	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
819	chr17	30676544	30676545	rs146413709	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	17q11.2	NR	rs146413709-T	0.028	2E-6		0.84	[0.49-1.19] unit increase	Illumina [9469131] (imputed)	N
819	chr17	30685934	30685935	rs2344976	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q11.2	NR	rs2344976-C	0.612	8E-9		0.015087738	[0.01-0.0202] unit decrease	NR [~ 10000000] (imputed)	N
819	chr17	30689813	30689814	rs9896320	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q11.2	NR	rs9896320-A	0.611	2E-10		0.00705081	[0.0049-0.0092] unit decrease	NR [9732723] (imputed)	N
819	chr17	30692395	30692396	rs3795244	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	17q11.2	ZNF207	rs3795244-T	NR	3E-6		2.46	[1.69-3.58]	NR [7738399] (imputed)	N
819	chr17	30760317	30760318	rs62065467	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	17q11.2	PSMD11	rs62065467-C	NR	1E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
819	chr17	30763008	30763009	rs4794923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q11.2		rs4794923-?	NR	2E-8				NR [~ 8900000] (imputed)	N
819	chr17	30777923	30777924	rs9899540	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	17q11.2	RP11-227G15.6	rs9899540-A	0.3999	2E-10		0.2011	[0.14-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
819	chr17	30801440	30801441	rs4132610	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q11.2		rs4132610-C	0.383	2E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
820	chr17	30824712	30824713	rs141393054	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	17q11.2	NR	rs141393054-T	0.028	2E-6		0.85	[0.5-1.2] unit increase	Illumina [9469131] (imputed)	N
820	chr17	30877657	30877658	rs225190	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17q11.2	MYO1D	rs225190-G	0.36	6E-6	(allelic)	1.26	[1.14-1.39]	Illumina [420236]	N
820	chr17	30891813	30891814	rs379123	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	17q11.2	MYO1D	rs379123-T	0.59	2E-8	(Severe Centrilobular)	0.005	[0.0030-0.0070] unit decrease	Illumina [6942916] (imputed)	N
820	chr17	30891813	30891814	rs379123	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	17q11.2	MYO1D	rs379123-T	0.59	2E-6	(Severe Centrilobular, EA)	0.005	[0.0030-0.0070] unit decrease	Illumina [6942916] (imputed)	N
820	chr17	30896454	30896455	rs225212	22322875	Kim SJ	2012-02-09	Circ J	Genetic association of short sleep duration with hypertension incidence--a 6-year follow-up in the Korean genome and epidemiology study.	Hypertension risk in short sleep duration	4,965 Korean ancestry individuals	NA	17q11.2	MYO1D	rs225212-?	NR	5E-6	SNP+sleep	5.08	[2.52-10.23]	Affymetrix [334750]	N
820	chr17	30903309	30903310	rs11654699	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	17q11.2	MYO1D	rs11654699-C	0.5243	5E-6	(Ordinal II)	0.2055	[0.12-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
821	chr17	30953775	30953776	rs321157	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	17q11.2		rs321157-?	NR	7E-7		0.255	[0.16-0.35] unit decrease	Illumina [5082878] (imputed)	N
821	chr17	31004274	31004275	rs2640840	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	2,382 European ancestry boys	NA	17q11.2	MYO1D	rs2640840-A	0.47	3E-7		413.48	[256.01-570.95] unit increase	Illumina [27449291] (imputed)	N
821	chr17	31030457	31030458	rs80212824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q11.2		rs80212824-?	NR	5E-8				NR [~ 8900000] (imputed)	N
822	chr17	31066496	31066497	rs62068432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q11.2		rs62068432-?	NR	5E-83				NR [~ 8900000] (imputed)	N
822	chr17	31078271	31078272	rs17183295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	MYO1D	rs17183295-T	0.188753	1E-24		0.037934497	[0.031-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr17	31078271	31078272	rs17183295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q11.2	MYO1D	rs17183295-T	0.1875	4E-26		0.04787113	[0.039-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr17	31078271	31078272	rs17183295	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	17q11.2	MYO1D	rs17183295-T	0.23	1E-10		0.131	[0.092-0.17] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
822	chr17	31082571	31082572	rs145290255	29155802	Huckins LM	2017-07-25	Mol Psychiatry	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Anorexia nervosa	2,158 European ancestry female cases, 15 ,485 European ancestry controls	1,299 European ancestry cases, 3,733 European ancestry controls	17q11.2	MYO1D	rs145290255-T	0.0011	2E-6		0.02		Illumina [up to 524954]	N
822	chr17	31119036	31119037	rs17780981	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q11.2	MYO1D	rs17780981-G	0.1894	7E-15		0.03559247	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr17	31124261	31124262	rs112916054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q11.2	MYO1D	rs112916054-T	0.1865	1E-10		0.02920873	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr17	31149425	31149426	rs142414016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q11.2	MYO1D	rs142414016-G	0.188028	1E-20		0.026659383	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
822	chr17	31149425	31149426	rs142414016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q11.2	MYO1D	rs142414016-G	0.18802	7E-18		0.024642952	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
822	chr17	31149425	31149426	rs142414016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q11.2	MYO1D	rs142414016-G	0.187989	3E-20		0.026497502	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
822	chr17	31149425	31149426	rs142414016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q11.2	MYO1D	rs142414016-G	0.188027	2E-27		0.030962756	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
822	chr17	31149425	31149426	rs142414016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q11.2	MYO1D	rs142414016-G	0.188018	6E-25		0.029398594	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
822	chr17	31149523	31149524	rs144299400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q11.2	NR	rs144299400-T	0.179637	2E-99				Affymetrix, Illumina [22063850] (imputed)	N
822	chr17	31149523	31149524	rs144299400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q11.2	NR	rs144299400-T	0.183941	6E-101		0.053854	[0.049-0.059] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
822	chr17	31164366	31164367	rs62070183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q11.2	MYO1D	rs62070183-C	0.1891	7E-13		0.03286324	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr17	31164366	31164367	rs62070183	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q11.2	MYO1D	rs62070183-C	0.1892	3E-11		0.03046812	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr17	31184630	31184631	rs17183628	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q11.2	MYO1D	rs17183628-C	0.1883	5E-14		0.03456426	[0.026-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr17	31227592	31227593	rs62070229	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q11.2	MYO1D, TMEM98, SPACA3	rs62070229-?		7E-44				Affymetrix, Illumina [NR] (imputed)	N
823	chr17	31227592	31227593	rs62070229	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q11.2	MYO1D, TMEM98	rs62070229-A	0.8065	1E-17		8.578	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
823	chr17	31227592	31227593	rs62070229	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q11.2	NR	rs62070229-A	0.8141	3E-8		0.1059	[0.068-0.143] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
823	chr17	31227592	31227593	rs62070229	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q11.2	NR	rs62070229-A	0.8116	3E-8	(EA)	0.1078	[0.07-0.146] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
823	chr17	31236213	31236214	rs114873645	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	17q11.2	NR	rs114873645-?	NR	9E-6		0.2011	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
823	chr17	31239644	31239645	rs10512441	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	17q11.2	MYO1D, TMEM98	rs10512441-?	NR	4E-12		1.065	[1.046-1.084]	Illumina [13762925] (imputed)	N
823	chr17	31246584	31246585	rs62067160	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q11.2	NR	rs62067160-?	NR	6E-9		0.153202	[0.1-0.2] unit increase	NR [13958389] (imputed)	N
823	chr17	31251089	31251090	rs538393822	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	17q11.2	TMEM98	rs538393822-T	0.0083	8E-6		0.7933	[0.44-1.14] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
823	chr17	31251710	31251711	rs62067167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q11.2	TMEM98	rs62067167-T	0.17757	1E-13		0.021956572	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr17	31251710	31251711	rs62067167	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q11.2	NR	rs62067167-C		8E-19		0.13	[0.091-0.169] unit increase	NR [NR]	N
823	chr17	31251710	31251711	rs62067167	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17q11.2	NR	rs62067167-T	0.1957	4E-12		0.0632	[0.045-0.081] unit decrease	Illumina [~ 10600000] (imputed)	N
823	chr17	31277764	31277765	rs2428361	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	17q11.2	SPACA3	rs2428361-C	NR	9E-7	(men)	0.245	[0.15-0.34] unit increase	Illumina [5527232] (imputed)	N
823	chr17	31298230	31298230	rs533128213	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q11.2	SPACA3	rs533128213-AT	0.151439	4E-11		0.026690718	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr17	31298322	31298323	rs78079206	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q11.2	NR	rs78079206-A	NR	6E-19		0.0491695	[0.038-0.06] unit decrease	Affymetrix [16832071] (imputed)	N
823	chr17	31325102	31325103	rs757079	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroxine levels	596 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 609 Vis (founder/genetic isolate) individuals	NA	17q11.2	SPACA3	rs757079-G	0.4	5E-7		0.18	[0.1-0.26] pmol/L decrease	Illumina [7411206] (imputed)	N
824	chr17	31363713	31363714	rs560769564	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q11.2	NR	rs560769564-?	NR	2E-6		4.777	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
824	chr17	31364540	31364541	rs9910292	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	17q11.2	ASIC2	rs9910292-T	NR	5E-6		0.0347797	[0.02-0.05] unit decrease	Illumina [13520550] (imputed)	N
824	chr17	31380310	31380311	rs12450465	30343302	Kim SH	2018-10-19	Gynecol Obstet Invest	High Genetic Risk Scores of ASIC2, MACROD2, CHRM3, and C2orf83 Genetic Variants Associated with Polycystic Ovary Syndrome Impair Insulin Sensitivity and Interact with Energy Intake in Korean Women.	Polycystic ovary syndrome	182 Korean ancestry cases, 240 Korean ancestry controls	NA	17q11.2	ASIC2	rs12450465-G	0.3312	8E-6		0.8755	NR unit decrease	Affymetrix [NR]	N
824	chr17	31393701	31393702	rs17808461	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q11.2	ACCN1	rs17808461-A	0.117	4E-6	(MCP1 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
824	chr17	31448648	31448649	rs7213812	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	17q11.2	ASIC2	rs7213812-C	NR	6E-6		1.29	[NR]	Illumina [5595657] (imputed)	N
824	chr17	31455424	31455425	rs4510073	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	17q11.2	NR	rs4510073-?	NR	3E-6				Illumina [5946283] (imputed)	N
825	chr17	31460898	31460899	rs7211567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q11.2		rs7211567-T	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
825	chr17	31473454	31473455	rs73982435	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q11.2	ASIC2	rs73982435-C	0.784163	2E-8		0.00942922	[0.0062-0.0127] unit increase	Affymetrix [12370749]	N
825	chr17	31473454	31473455	rs73982435	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q11.2	NR	rs73982435-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
825	chr17	31473454	31473455	rs73982435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q11.2		rs73982435-?	NR	4E-12				NR [~ 8900000] (imputed)	N
825	chr17	31475544	31475545	rs3930349	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q11.2	NA	rs3930349-A	0.2089	8E-12		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
825	chr17	31483232	31483233	rs117217798	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	17q11.2	NR	rs117217798-C		4E-6		0.2036	[0.12-0.29] SD units increase	NR [10700000] (imputed)	N
825	chr17	31485879	31485880	rs72819126	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q11.2	NR	rs72819126-?	NR	1E-6	(EA)	0.5993	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
825	chr17	31532413	31532414	rs144908958	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q11.2	ACCN1	rs144908958-A	1.0	5E-6	(AA)	0.616	unit increase	Illumina [NR] (imputed)	N
825	chr17	31539142	31539143	rs8082191	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (age at first cigarette)	up to 146,117 European ancestry control	NA	17q11.2	ACCN1	rs8082191-T	0.279	1E-8		0.0254	[0.017-0.034] unit increase	Illumina [~ 250000] (imputed)	N
825	chr17	31541716	31541717	rs387627	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	17q11.2		rs387627-?	NR	2E-9		0.0198	unit increase	NR [NR]	N
825	chr17	31554532	31554533	rs319748	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (bowel movement)	903 Japanese ancestry female cases, 4,831 Japanese ancestry female controls	921 Japanese ancestry female cases, 4,693 Japanese ancestry female controls	17q11.2	NR	rs319748-A	0.439014079	5E-7		0.1860469	[0.11-0.26] unit decrease	Affymetrix [536506]	N
825	chr17	31556680	31556681	rs80343429	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q11.2	ASIC2	rs80343429-A	0.05	1E-8		8.01	[NR] unit increase	Affymetrix [7884700] (imputed)	N
826	chr17	31612493	31612494	rs9915356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q11.2	Intergenic	rs9915356-A	0.5348	5E-14	(MTAG)	0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr17	31612493	31612494	rs9915356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q11.2	Intergenic	rs9915356-A	0.5348	2E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr17	31614453	31614454	rs870589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q11.2	Intergenic	rs870589-A	0.4646	2E-15	(MTAG)	0.0131	[0.0098-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
826	chr17	31614453	31614454	rs870589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q11.2		rs870589-A	0.4595	2E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
826	chr17	31614453	31614454	rs870589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q11.2	Intergenic	rs870589-A	0.4595	4E-11	(MTAG)	0.0087	[0.0062-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
826	chr17	31619344	31619345	rs7213721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q11.2	Intergenic	rs7213721-G	0.531	4E-8		0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
826	chr17	31625199	31625200	rs12938235	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q11.2	ASIC2	rs12938235-T	0.4618	3E-8		0.00944011	[0.0061-0.0128] unit increase	Affymetrix [11880941] (imputed)	N
826	chr17	31625886	31625887	rs4365329	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q11.2	ASIC2	rs4365329-T	0.4617	3E-8		1.0195894		Affymetrix [11880941] (imputed)	N
826	chr17	31626854	31626855	rs2346689	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		ASIC2	rs2346689-A	0.27	8E-6		0.11	[0.051-0.169] unit decrease	Illumina [3700000] (imputed)	N
826	chr17	31640057	31640058	rs59692040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q11.2	Intergenic	rs59692040-T	0.3625	2E-9	(MTAG)	0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
826	chr17	31648905	31648906	rs114366450	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	17q11.2		rs114366450-G	0.981334	2E-6		0.0457461	[0.027-0.064] unit decrease	Illumina [13900000] (imputed)	N
826	chr17	31650222	31650223	rs12450841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q11.2		rs12450841-?	NR	2E-8				NR [~ 8900000] (imputed)	N
826	chr17	31665327	31665328	rs320637	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	17q11.2	ACCN1	rs320637-?		4E-6				Illumina [859311]	N
826	chr17	31673343	31673344	rs17184727	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ASIC2	rs17184727-?	NR	1E-9	(male)	2.46365	[NR] unit increase	Affymetrix [NR] (imputed)	N
826	chr17	31702421	31702422	rs7215745	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q11.2	ASIC2	rs7215745-?		2E-6				Illumina [4322238] (imputed)	N
826	chr17	31711442	31711443	rs2089164	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q11.2	NR	rs2089164-?	NR	2E-9				Affymetrix [NR]	N
827	chr17	31726161	31726162	rs34187563	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	17q11.2	NR	rs34187563-T	0.4051	3E-7		0.0064	[0.004-0.0088] unit decrease	NR [7666894] (imputed)	N
827	chr17	31737420	31737421	rs1354492	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	17q11.2	ACCN1	rs1354492-A	0.49	2E-6	(FVIII activity)	0.16	[0.10-0.22] IU/dL increase	Illumina [442728]	N
827	chr17	31749185	31749186	rs35578035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q11.2		rs35578035-?	NR	7E-9				NR [~ 8900000] (imputed)	N
827	chr17	31773862	31773863	rs149924615	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	17q11.2		rs149924615-?	NR	8E-7		0.7914586	[0.48-1.1] unit decrease	Illumina [9906551] (imputed)	N
827	chr17	31773862	31773863	rs149924615	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	17q11.2		rs149924615-?	NR	7E-7		0.8279309	[0.5-1.15] unit decrease	Illumina [9901720] (imputed)	N
827	chr17	31781378	31781379	rs11651843	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	17q11.2	ACCN1	rs11651843-?	NR	3E-6				Illumina [1940243] (imputed)	N
827	chr17	31795715	31795716	rs1875872	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	17q11.2	ASIC2	rs1875872-A	0.65	2E-6		0.14	[0.081-0.199] unit increase	Illumina [7411206] (imputed)	N
827	chr17	31847625	31847626	rs9905752	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs9905752-C	0.0122	2E-8	(BHMT)	8.058	NR unit increase	Illumina [1671387] (imputed)	N
828	chr17	31895447	31895448	rs17782805	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	17q12	ASIC2	rs17782805-?	0.058917	7E-7		1.836717	[1.444594-2.33528]	Affymetrix, Illumina [NR] (imputed)	N
828	chr17	31970482	31970483	rs11652874	28459102	Zhang S	2016-04-20	JDR Clin Trans Res	The Novel ASIC2 Locus is Associated with Severe Gingival Inflammation.	Severe gingival inflammation	4,077 European American individuals	NA	17q12	ACCN1, ASIC2	rs11652874-G	NR	4E-8		0.740595	[0.48-1] unit increase	Affymetrix [2500000] (imputed)	N
829	chr17	32025369	32025370	rs66785114	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	17q12	NR	rs66785114-A		6E-6		0.3016	[0.17-0.43] unit increase	Illumina [NR] (imputed)	N
829	chr17	32035343	32035344	rs78494421	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	17q12		rs78494421-?	NR	5E-6		0.26	[0.15-0.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
829	chr17	32056225	32056226	rs9903658	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	17q12	ASIC2	rs9903658-G	0.141	1E-6	(men)	0.218	[0.13-0.3] mg/dL increase	Illumina [622468]	N
830	chr17	32112663	32112664	rs181054738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q12		rs181054738-T	0.996773	3E-8		0.202622	[0.13-0.27] unit decrease	NR [11722792] (imputed)	N
830	chr17	32161501	32161502	rs317326	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	17q12	NR	rs317326-?	NR	4E-8		5.514	NR z score increase	Illumina [at least 830937] (imputed)	N
830	chr17	32169344	32169345	rs317386	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q12	ASIC2	rs317386-A	0.500889047969768	5E-6	(F_Sutterellaceae_RNT)	0.104506	[0.06-0.149] unit decrease	Illumina [7711310] (imputed)	N
831	chr17	32247584	32247585	rs4794977	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q12	NA	rs4794977-C	0.5749	2E-9		0.0118	[0.0079-0.0157] unit increase	NR [~ 27400000] (imputed)	N
831	chr17	32286563	32286564	rs138741144	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (septal defects)	1,074 European ancestry cases, 8,486 European ancestry controls	NA	17q12	ASIC2	rs138741144-?		7E-8		2.46	[1.77-3.42]	Affymetrix, Illumina [9216527] (imputed)	N
831	chr17	32287448	32287449	rs11650066	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	17q12	intergenic	rs11650066-?	NR	6E-6				Illumina [574919]	N
831	chr17	32291019	32291020	rs62057446	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	17q12		rs62057446-T	NR	2E-6		0.019	[0.011-0.027] unit increase	NR [7831927]	N
831	chr17	32300291	32300292	rs140016681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q12	NR	rs140016681-?	NR	5E-6		0.0077347	[0.0044-0.0111] unit increase	Affymetrix [805426] (imputed)	N
831	chr17	32306422	32306423	rs117364231	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q12	ACCN1	rs117364231-?	NR	1E-7				Affymetrix [5486770] (imputed)	N
832	chr17	32422698	32422699	rs116908816	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q12	NR	rs116908816-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
832	chr17	32464153	32464154	rs9901756	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	17q12	CCL2, LOC100131744	rs9901756-A	0.893	7E-6		1.21	[1.11-1.32]	Illumina [870065]	N
832	chr17	32474148	32474149	rs17193410	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17q12		rs17193410-G	NR	2E-8		0.028299173	[0.019-0.038] years increase	NR [7400000] (imputed)	N
833	chr17	32519469	32519470	rs76801069	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q12	Intergenic	rs76801069-?		7E-6		1.48	[1.25-1.76]	Illumina [7645193] (imputed)	N
833	chr17	32519857	32519858	rs9911144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q12	RP11-215E13.1	rs9911144-C	0.221509	5E-19		0.023760812	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr17	32519857	32519858	rs9911144	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q12	NR	rs9911144-C	0.220841	1E-24		0.023122	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
833	chr17	32529279	32529280	rs9891243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q12		rs9891243-G	NR	3E-14		0.0193	[0.014-0.024] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
833	chr17	32533422	32533423	rs12601658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL8	5,359 Icelandic ancestry individuals	NA	17q12		rs12601658-A	0.2191	6E-16		0.17875	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
833	chr17	32533422	32533423	rs12601658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL8	5,337 Icelandic ancestry individuals	NA	17q12		rs12601658-A	0.2191	2E-13		0.148754	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
833	chr17	32533422	32533423	rs12601658	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL7	5,364 Icelandic ancestry individuals	NA	17q12		rs12601658-A	0.2191	4E-41		0.305959	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
833	chr17	32533422	32533423	rs12601658	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs12601658-A	0.23	6E-12		0.0644	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
833	chr17	32535459	32535460	rs7218453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q12		rs7218453-T	0.220609	3E-25		0.027898569	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr17	32541343	32541344	rs9909465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs9909465-T	0.203913	9E-24				Affymetrix, Illumina [23467995] (imputed)	N
833	chr17	32541343	32541344	rs9909465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q12	intergenic	rs9909465-T	0.2218	1E-9		0.02632171	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
833	chr17	32546155	32546156	rs9906695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q12	intergenic	rs9906695-T	0.2221	3E-11		0.02865212	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr17	32570546	32570547	rs9889296	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q12	intergenic	rs9889296-?	NR	5E-21	(subset analysis)			Illumina [130052]	N
833	chr17	32570546	32570547	rs9889296	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs9889296-?	NR	1E-20	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
833	chr17	32574447	32574448	rs4795893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs4795893-A	0.361	9E-14	(Corneodesmosin, CDSN.7085.81.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
833	chr17	32586093	32586094	rs2530797	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDSN	5,366 Icelandic ancestry individuals	NA	17q12		rs2530797-C	0.3151	3E-21		0.193045	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
833	chr17	32593664	32593665	rs3091315	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	17q12	CCL2, CCL7, CCL11	rs3091315-G	NR	5E-7	(PWY-6654_phosphopantothenate_biosynthesis_III)	5.0421667	Z-score increase	Illumina [8100000] (imputed)	N
833	chr17	32593664	32593665	rs3091315	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs3091315-A	0.73	4E-20	(EA)	1.1091312		Affymetrix, Illumina [~ 9000000] (imputed)	N
833	chr17	32593664	32593665	rs3091315	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs3091315-A	0.73	8E-25	(EA)	1.1525311	[1.13-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
833	chr17	32593664	32593665	rs3091315	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	17q12	CCL2, CCL7	rs3091315-A	0.723	2E-13		1.2	[1.14-1.26]	Affymetrix, Illumina [953241] (imputed)	N
833	chr17	32593973	32593974	rs3091316	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	17q12	AC005549.3, CCL2, CCL7, CCL11	rs3091316-?		1E-12				Illumina [9725440] (imputed)	N
833	chr17	32593973	32593974	rs3091316	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q12	AC005549.3, CCL2, CCL7, CCL11	rs3091316-?		2E-17				Illumina [9560910] (imputed)	N
833	chr17	32593973	32593974	rs3091316	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	17q12	CCL2, CCL7, CCL11	rs3091316-A	NR	6E-7	(PWY-6654_phosphopantothenate_biosynthesis_III)	4.9887505	Z-score increase	Illumina [8100000] (imputed)	N
833	chr17	32593973	32593974	rs3091316	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q12	CCL2, CCL11, CCL13	rs3091316-G	0.722	1E-26		1.122	[1.087-1.158]	Affymetrix, Illumina [1230000] (imputed)	N
833	chr17	32593973	32593974	rs3091316	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	17q12	CCL2, CCL11, CCL8, CCL13, CCL7, CCL1	rs3091316-G	0.732	4E-8		1.14	[1.03-1.27]	Affymetrix, Illumina [1060934] (imputed)	N
833	chr17	32619051	32619052	rs79722574	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	17q12	NR	rs79722574-C	NR	1E-6		0.1113	[0.067-0.156] SD units increase	NR [10700000] (imputed)	N
833	chr17	32634858	32634859	rs2215184	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs2215184-?		2E-30	(CCL8)	0.5242	[NR] unit decrease	Illumina [NR]	N
834	chr17	32647356	32647357	rs34202026	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs34202026-T	0.021	1E-53	(C-C motif chemokine 7, CCL7.4886.3.1)	1.32	[1.14-1.5] unit increase	Affymetrix [10572788] (imputed)	N
834	chr17	32647543	32647544	rs3138036	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MCP 2 plasma levels	400 French ancestry individuals	NA	17q12		rs3138036-A	NR	3E-6		0.197	[0.11-0.28] pg/mL decrease	Illumina [5201092] (imputed)	N
834	chr17	32647543	32647544	rs3138036	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL8	5,337 Icelandic ancestry individuals	NA	17q12		rs3138036-G	0.1771	5E-109		0.468601	[0.43-0.51] unit decrease	Illumina [7506463] (imputed)	N
834	chr17	32647543	32647544	rs3138036	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL8, RP11-521P1.1	rs3138036-G	0.1454363	2E-69	(C-C motif chemokine 7)	0.9997	[0.9-1.1] unit decrease	Affymetrix [509946]	N
834	chr17	32647543	32647544	rs3138036	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL8, RP11-521P1.1	rs3138036-G	0.1454363	1E-14	(EA, C-C motif chemokine 8)	0.4704	[0.35-0.59] unit decrease	Affymetrix [509946]	N
834	chr17	32647830	32647831	rs1133763	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL8	rs1133763-C	0.158	1E-11	(C-C motif chemokine 8, CCL8.2785.15.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
834	chr17	32648878	32648879	rs11342894	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL7	rs11342894-C	0.158	7E-72	(C-C motif chemokine 7, CCL7.4886.3.1)	0.59	[0.53-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
834	chr17	32656601	32656602	rs9914367	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs9914367-?		3E-19	(CCL8)	0.3092	[NR] unit decrease	Illumina [NR]	N
834	chr17	32657535	32657536	rs8068122	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	17q12	NR	rs8068122-?	NR	6E-11	(MCP-3)			Illumina [~ 4000000] (imputed)	N
834	chr17	32657535	32657536	rs8068122	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL7	rs8068122-C	0.828125	2E-263	(CCL7, 4886_3_1)	1.045583	[0.99-1.1] unit increase	Illumina [> 1000000] (imputed)	N
834	chr17	32657541	32657542	rs8066978	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL8	rs8066978-G	0.828125	1E-58	(CCL8, 2785_15_2)	0.5167341	[0.46-0.58] unit increase	Illumina [> 1000000] (imputed)	N
834	chr17	32660148	32660149	rs12602195	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	NR	rs12602195-?	NR	4E-11	(EA, C-C motif chemokine 8)			Affymetrix [509946]	N
834	chr17	32669020	32669021	rs62056376	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		17q12	intergenic	rs62056376-?	NR	5E-7	(AA)	0.244	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
834	chr17	32674233	32674234	rs4795912	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL8	rs4795912-C	0.80390625	2E-460	(CCL8, 13748_4_3)	1.2207235	[1.18-1.26] unit increase	Illumina [> 1000000] (imputed)	N
834	chr17	32682615	32682616	rs3136674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL13	rs3136674-C	0.055	5E-21	(Corneodesmosin, CDSN.7085.81.3)	0.52	[0.4-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
834	chr17	32682615	32682616	rs3136674	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs3136674-?		5E-8	(CCL13)	0.5162	[NR] unit decrease	Illumina [NR]	N
834	chr17	32683288	32683289	rs3136676	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDSN	5,366 Icelandic ancestry individuals	NA	17q12		rs3136676-G	0.0739	2E-41		0.481433	[0.41-0.55] unit decrease	Illumina [7506463] (imputed)	N
834	chr17	32736264	32736265	rs159250	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs159250-T	0.0122	2E-8	(ME1)	0.1216	NR unit decrease	Illumina [1671387] (imputed)	N
834	chr17	32745162	32745163	rs7217062	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q12	CCL13	rs7217062-?	NR	8E-6	(TAG 54:2)	0.28381252	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
835	chr17	32806064	32806065	rs182223589	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL7	5,364 Icelandic ancestry individuals	NA	17q12		rs182223589-G	0.01538	2E-26		0.827035	[0.68-0.98] unit increase	Illumina [7506463] (imputed)	N
835	chr17	32832525	32832526	rs72829264	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs72829264-G	NR	9E-9		0.1601	[0.11-0.21] SD units increase	NR [10700000] (imputed)	N
835	chr17	32845851	32845852	rs72829268	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	17q12		rs72829268-?	NR	7E-10				Affymetrix [NR] (imputed)	N
835	chr17	32862189	32862190	rs17662217	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	17q12	intergenic	rs17662217-?	NR	3E-6	(AUC)			NR [2092490]	N
835	chr17	32880881	32880882	rs34145262	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	17q12	NR	rs34145262-?	NR	5E-6				Illumina [7500450] (imputed)	N
836	chr17	32900836	32900837	rs11657979	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q12		rs11657979-G	0.759	8E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
836	chr17	32900836	32900837	rs11657979	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs11657979-A	0.2449	5E-8		0.0091	[0.0058-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
836	chr17	32903537	32903538	rs4795936	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	17q12	C17orf102	rs4795936-G	0.094	4E-6		0.13	[0.19-0.08] unit decrease	Affymetrix [7435577] (imputed)	N
836	chr17	32910057	32910058	rs4795939	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs4795939-A	0.08362	2E-8	(COQ9)	0.006935	NR unit increase	Illumina [1671387] (imputed)	N
836	chr17	32972728	32972729	rs4990638	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	17q12	TMEM132E	rs4990638-C		2E-6	(Openness)	0.06	[-0.0184-0.1384] unit decrease	Illumina [2053685] (imputed)	N
836	chr17	32976768	32976769	rs144872064	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	17q12	TMEM132E	rs144872064-T	0.0032	5E-6		0.5663	[0.32-0.81] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
836	chr17	32986154	32986155	rs145258459	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	17q12	TMEM132E	rs145258459-C	NR	2E-8		1.23	[1.13-1.35]	Affymetrix [up to 73355677] (imputed)	N
836	chr17	32989537	32989538	rs11654964	24080446	Rudolph A	2013-11-04	Endocr Relat Cancer	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Lobular breast cancer (menopausal hormone therapy interaction)	541 European ancestry cases	676 European ancestry cases, 9,266 European ancestry controls	17q12	TMEM132E	rs11654964-?		3E-6		1.67	[1.35-2.06]	Illumina [2500000] (imputed)	N
836	chr17	32992518	32992519	rs76643455	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	17q12	NR	rs76643455-T	0.05961	3E-6		0.301	[0.18-0.43] unit decrease	Illumina [10677593] (imputed)	N
836	chr17	32997312	32997313	rs12601721	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs12601721-G	NR	1E-11		0.1213	[0.086-0.156] SD units increase	NR [10700000] (imputed)	N
836	chr17	33005693	33005694	rs4795963	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs4795963-T	0.13	1E-7		5.01	[NR] unit increase	Affymetrix [7884700] (imputed)	N
836	chr17	33006807	33006808	rs148327846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs148327846-T	0.01568	3E-8	(YARS)	0.04292	NR unit increase	Illumina [1671387] (imputed)	N
836	chr17	33024500	33024501	rs7216674	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q12	FLJ44815	rs7216674-?	NR	6E-6	(TAG 58:8)	0.29483515	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
836	chr17	33024500	33024501	rs7216674	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q12	FLJ44815	rs7216674-?	NR	4E-6	(TAG 58:9)	0.2990955	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
837	chr17	33112105	33112106	rs730547	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	17q12	TMEM132E	rs730547-?		1E-7				Illumina [859311]	N
837	chr17	33160434	33160435	rs7218593	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	17q12	RP11-642M2.1, CCT6B, ZNF830, LIG3	rs7218593-T	NR	2E-7	(sleep onset)	0.3163	[0.2-0.44] unit decrease	Affymetrix [7141204] (imputed)	N
838	chr17	33200384	33200385	rs1842713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs1842713-A	0.7882	1E-11		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
838	chr17	33200384	33200385	rs1842713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs1842713-A	0.7882	7E-11	(MTAG)	0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
838	chr17	33205042	33205043	rs234815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q12		rs234815-?	NR	8E-8				NR [~ 8900000] (imputed)	N
838	chr17	33213345	33213346	rs553105470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17q12	RP11-642M2.1	rs553105470-T	0.9987	2E-6		1.7626	[1.03-2.49] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
838	chr17	33215112	33215113	rs116994735	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs116994735-A	0.05	1E-7		7.33	[NR] unit increase	Affymetrix [7884700] (imputed)	N
838	chr17	33266430	33266431	rs12452225	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	17q12	CCT6B, ZNF830, LIG3, RFFL	rs12452225-C	NR	4E-7	(sleep onset)	0.3253	[0.2-0.45] unit decrease	Affymetrix [7141204] (imputed)	N
839	chr17	33308245	33308246	rs145583519	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs145583519-G	NR	3E-11		0.4044	[0.29-0.52] SD units increase	NR [10700000] (imputed)	N
839	chr17	33313728	33313729	rs3135967	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q12	LIG3	rs3135967-?	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
839	chr17	33313728	33313729	rs3135967	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q12	LIG3	rs3135967-A	0.5243	8E-11		0.1128	[0.079-0.147] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
839	chr17	33317247	33317248	rs3135977	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q12	NR	rs3135977-?	NR	8E-9				Affymetrix [NR]	N
839	chr17	33324381	33324382	rs2074518	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	17q12	LIG3	rs2074518-C	0.545	2E-8	(men)	0.042	[0.028-0.056] unit increase	Affymetrix [~ 9000000] (imputed)	N
839	chr17	33324381	33324382	rs2074518	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	17q12	LIG3	rs2074518-T	0.462	3E-13		1.33	[0.97-1.69] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
839	chr17	33324381	33324382	rs2074518	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	17q12	LIG3, RFFL	rs2074518-T	0.46	6E-12		1.05	[0.71-1.39] msec decrease	Affymetrix, Illumina [up to 2543686] (imputed)	N
839	chr17	33331574	33331575	rs1052536	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q12	LIG3	rs1052536-C	0.53	6E-25		0.98	[0.78-1.18] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
839	chr17	33338446	33338447	rs16970540	31196165	Lee E	2019-06-13	Hum Genomics	Genome-wide enriched pathway analysis of acute post-radiotherapy pain in breast cancer patients: a prospective cohort study.	Acute post-radiotherapy pain in breast cancer	136 Hispanic cases, 75 European ancestry cases, 102 African ancestry cases, 45 cases, 265 Hispanic controls, 282 European ancestry controls, 194 African ancestry controls, 45 controls	NA	17q12	RFFL, LIG3	rs16970540-T	0.1	2E-6		2.2	[1.59-3.04]	Illumina [1344832] (imputed)	N
839	chr17	33351518	33351519	rs117014945	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs117014945-A	0.05	1E-7		7.92	[NR] unit increase	Affymetrix [7884700] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	5E-9	(324 ms)	0.0313875	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	5E-10	(318 ms)	0.033715	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	4E-8	(350 ms)	0.0310713	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	4E-8	(348 ms)	0.031004	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	4E-8	(336 ms)	0.0301805	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-9	(312 ms)	0.0320178	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-8	(342 ms)	0.0307824	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-8	(340 ms)	0.0307581	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-8	(328 ms)	0.0304762	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-8	(326 ms)	0.0303202	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	3E-10	(320 ms)	0.034212	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	2E-8	(358 ms)	0.0319326	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	2E-8	(334 ms)	0.0306586	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	2E-8	(330 ms)	0.0304672	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	1E-9	(322 ms)	0.0325878	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	1E-9	(316 ms)	0.0326899	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33399744	33399745	rs1088450	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q12	RFFL	rs1088450-T	0.545147	1E-9	(314 ms)	0.0323175	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
839	chr17	33405261	33405262	rs1680529	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	17q12		rs1680529-C	0.44	2E-6		0.028	[0.016-0.04] unit increase	Affymetrix [NR]	N
840	chr17	33473640	33473641	rs8069917	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	17q12	Intergenic	rs8069917-T	0.061	7E-6		1.2174	[0.69-1.75] unit decrease	Illumina [9520174] (imputed)	N
840	chr17	33501643	33501644	rs12452554	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	17q12	UNC45B	rs12452554-C	NR	4E-6		1.81	[1.41-2.33]	Illumina [5698748] (imputed)	N
840	chr17	33503363	33503364	rs149150374	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	17q12	NR	rs149150374-?	NR	7E-6		0.6872	[0.36-1.02] unit decrease	Illumina [at least 560000] (imputed)	N
840	chr17	33516593	33516594	rs1994089	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs1994089-C	NR	6E-12		0.1116	[0.08-0.143] SD units increase	NR [10700000] (imputed)	N
841	chr17	33592445	33592446	rs185910438	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs185910438-G	0.03	8E-7		9.61	[NR] unit increase	Affymetrix [7884700] (imputed)	N
841	chr17	33648380	33648381	rs117620244	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs117620244-C	NR	2E-12		0.3528	[0.26-0.45] SD units increase	NR [10700000] (imputed)	N
842	chr17	33687415	33687416	rs938298	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	17q12	NR	rs938298-T	NR	3E-6		0.872	NR	Illumina [at least 560000] (imputed)	N
842	chr17	33731763	33731764	rs2671828	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Barrett's esophagus x pack-years of smoking exposure interaction	3,104 European ancestry cases, 2,182 European ancestry controls	NA	17q12	SLFN11, LOC729839	rs2671828-G	0.57	1E-6		1.010101	[NR]	Illumina [993501]	N
842	chr17	33763677	33763678	rs2376263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs2376263-?	NR	2E-8				NR [~ 8900000] (imputed)	N
842	chr17	33774634	33774635	rs11080350	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8+ and CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs11080350-T	0.40178	9E-10		0.1548	[0.11-0.2] unit decrease	Illumina [18430788] (imputed)	N
842	chr17	33790986	33790987	rs72825991	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs72825991-A	0.04	5E-7		9.56	[NR] unit increase	Affymetrix [7884700] (imputed)	N
842	chr17	33794696	33794697	rs9896155	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9896155-G	0.67416	3E-9		0.1522	[0.1-0.2] unit increase	Illumina [18332267] (imputed)	N
842	chr17	33794696	33794697	rs9896155	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9896155-G	0.6740900000000001	8E-9		0.1433	[0.095-0.192] unit increase	Illumina [18427348] (imputed)	N
842	chr17	33794696	33794697	rs9896155	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9896155-G	0.67415	2E-8		0.1408	[0.091-0.19] unit increase	Illumina [18430788] (imputed)	N
842	chr17	33794696	33794697	rs9896155	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9896155-G	0.67452	6E-12		0.1857	[0.13-0.24] unit increase	Illumina [18340221] (imputed)	N
842	chr17	33794696	33794697	rs9896155	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9896155-G	0.67435	6E-10		0.1701	[0.12-0.22] unit increase	Illumina [18357815] (imputed)	N
842	chr17	33796259	33796260	rs9916629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916629-C	0.51234	4E-9		0.1457	[0.097-0.194] unit increase	Illumina [18427377] (imputed)	N
842	chr17	33796259	33796260	rs9916629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916629-C	0.5122	2E-8		0.1339	[0.087-0.181] unit increase	Illumina [18427348] (imputed)	N
842	chr17	33796259	33796260	rs9916629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916629-C	0.5122	3E-9		0.1432	[0.096-0.19] unit increase	Illumina [18427348] (imputed)	N
842	chr17	33796259	33796260	rs9916629	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916629-C	0.51229	2E-8		0.1378	[0.09-0.185] unit increase	Illumina [18430788] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56846	1E-15		0.1918	[0.14-0.24] unit increase	Illumina [18430820] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.5684899999999999	9E-17		0.2005	[0.15-0.25] unit decrease	Illumina [18427377] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56846	2E-23		0.2323	[0.19-0.28] unit decrease	Illumina [18430820] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56846	1E-15		0.1909	[0.14-0.24] unit decrease	Illumina [18430820] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR+ Natural Killer %Natural Killer	3,596 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.5697099999999999	7E-9		0.1457	[0.097-0.195] unit increase	Illumina [18380873] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56837	2E-9		0.1472	[0.099-0.195] unit increase	Illumina [18427348] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8dim Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56835	6E-9		0.1437	[0.095-0.192] unit increase	Illumina [18430788] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33- HLA DR- Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.42628	2E-8		0.1904	[0.12-0.26] unit decrease	Illumina [17203588] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3- lymphocyte %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56846	1E-15		0.1918	[0.14-0.24] unit decrease	Illumina [18430820] (imputed)	N
842	chr17	33797370	33797371	rs9916257	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	B cell %CD3- lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9916257-T	0.56846	1E-12		0.1693	[0.12-0.22] unit increase	Illumina [18430820] (imputed)	N
842	chr17	33802943	33802943	rs397940524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q12		rs397940524-CAT	NR	4E-8		0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
842	chr17	33803591	33803592	rs58745116	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs58745116-A	0.5218499999999999	1E-10		0.1662	[0.12-0.22] unit increase	Illumina [18340221] (imputed)	N
842	chr17	33803591	33803592	rs58745116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q12	NR	rs58745116-A	0.39091	3E-11		0.012544	[0.0089-0.0162] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
842	chr17	33805729	33805730	rs9912354	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer T %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9912354-T	0.5270900000000001	9E-9		0.1443	[0.095-0.193] unit increase	Illumina [18430820] (imputed)	N
842	chr17	33805729	33805730	rs9912354	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs9912354-T	0.52535	2E-9		0.1606	[0.11-0.21] unit increase	Illumina [18030777] (imputed)	N
842	chr17	33814498	33814498	rs34388527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q12		rs34388527-ACC	NR	2E-9		0.0298	[0.02-0.04] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Natural Killer %lymphocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.13396	2E-8		0.2075	[0.14-0.28] unit increase	Illumina [18430820] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3- lymphocyte %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.13396	3E-9		0.2194	[0.15-0.29] unit increase	Illumina [18430820] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.1343	4E-9		0.2225	[0.15-0.3] unit decrease	Illumina [18357815] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell %CD8dim T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.1343	4E-10		0.2283	[0.16-0.3] unit decrease	Illumina [18357815] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.13395	2E-8		0.2103	[0.14-0.28] unit decrease	Illumina [18340221] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8+ T cell %CD8+ T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.1343	1E-9		0.2034	[0.14-0.27] unit decrease	Illumina [18357815] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell %CD4-CD8- T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.1343	6E-11		0.2435	[0.17-0.32] unit decrease	Illumina [18357815] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD4-CD8- T cell %CD4-CD8- T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs4796089-C	0.1343	6E-11		0.2435	[0.17-0.32] unit increase	Illumina [18357815] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q12	SLFN12L	rs4796089-C	0.083095	2E-9		0.023877716	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr17	33814757	33814758	rs4796089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q12	NR	rs4796089-C	0.083755	1E-11		0.023755	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
843	chr17	33819301	33819302	rs1838149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q12	SLFN12L	rs1838149-A	0.422581	1E-17		0.019517666	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33819301	33819302	rs1838149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q12	SLFN12L	rs1838149-A	0.42257	1E-12		0.01620363	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33819301	33819302	rs1838149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1838149-A	0.370469	2E-13				Affymetrix, Illumina [19872809] (imputed)	N
843	chr17	33819301	33819302	rs1838149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q12	NR	rs1838149-A	0.421813	1E-15		0.016513	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
843	chr17	33819301	33819302	rs1838149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q12		rs1838149-?	NR	4E-10				NR [~ 8900000] (imputed)	N
843	chr17	33823097	33823098	rs117307642	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	17q12	NR	rs117307642-T	NR	8E-7	(Hispanic)	6.42	[3.93-8.91] unit increase	Affymetrix [14000000] (imputed)	N
843	chr17	33824530	33824531	rs12451924	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	17q12	NR	rs12451924-?	NR	7E-6	(EA)			Illumina [1735619]	N
843	chr17	33825402	33825403	rs41324748	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q12	NR	rs41324748-?	NR	1E-6		3963.993	NR unit decrease	Illumina [2379855]	N
843	chr17	33835586	33835587	rs151009319	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs151009319-T	NR	8E-15		0.5197	[0.39-0.65] SD units decrease	NR [10700000] (imputed)	N
843	chr17	33843511	33843512	rs8070473	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	17q12	SLFN12L	rs8070473-T	0.32	2E-6		0.16	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
843	chr17	33856174	33856175	rs9915940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	SLFN12L	rs9915940-C	0.9080311	2E-15		0.031157544	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33864770	33864771	rs8082605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	SLFN12L	rs8082605-T	0.039741	1E-75		0.11012354	[0.098-0.122] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33864770	33864771	rs8082605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q12	SLFN12L	rs8082605-T	0.0397420000000001	1E-62		0.09895082	[0.087-0.111] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33864770	33864771	rs8082605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q12	SLFN12L	rs8082605-T	0.039753	2E-42		0.079121105	[0.068-0.09] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33864770	33864771	rs8082605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q12	SLFN12L	rs8082605-T	0.039756	4E-41		0.077846535	[0.066-0.089] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33864770	33864771	rs8082605	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q12	SLFN12L	rs8082605-T	0.0395	5E-53		0.1411431	[0.12-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33864770	33864771	rs8082605	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q12	SLFN12L	rs8082605-T	0.0394	2E-49		0.1362732	[0.12-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33873771	33873772	rs7221322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q12		rs7221322-G	0.48976	2E-19		0.0300316	[0.024-0.037] unit increase	Illumina [13478928] (imputed)	N
843	chr17	33873771	33873772	rs7221322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	SLFN14	rs7221322-G	0.385582	3E-21		0.050837163	[0.04-0.061] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33873771	33873772	rs7221322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q12	SLFN14	rs7221322-G	0.385564	1E-13		0.025059031	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33873771	33873772	rs7221322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	17q12	NR	rs7221322-A	0.50198	1E-21		0.035986	[0.029-0.043] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
843	chr17	33873771	33873772	rs7221322	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	17q12	SLFN12L, SLFN14	rs7221322-?	NR	1E-12		0.03049	[0.022-0.039] unit increase novel	Illumina [6108953] (imputed)	N
843	chr17	33875261	33875262	rs8073060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	SLFN14	rs8073060-A	0.291083	5E-21		0.023345027	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33875261	33875262	rs8073060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs8073060-T	0.700205	1E-36				Affymetrix, Illumina [22063850] (imputed)	N
843	chr17	33875261	33875262	rs8073060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q12	NR	rs8073060-T	0.705375	2E-40		0.027506	[0.023-0.032] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
843	chr17	33875261	33875262	rs8073060	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q12	SLFN14	rs8073060-A	0.291	6E-48		0.05760199	[0.05-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33875261	33875262	rs8073060	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q12	SLFN14	rs8073060-A	0.2908	9E-14		0.02995227	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33875261	33875262	rs8073060	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q12	SLFN14	rs8073060-A	0.2902	1E-10		0.0252668	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33876082	33876083	rs1001441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14	rs1001441-A	0.090337	9E-127		0.12839073	[0.12-0.14] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33876082	33876083	rs1001441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q12	SLFN14	rs1001441-A	0.090332	2E-23		0.05331678	[0.043-0.064] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33878832	33878833	rs9906105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	SLFN14	rs9906105-G	0.092091	5E-17		0.044124786	[0.034-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33879324	33879325	rs321606	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	17q12	NR	rs321606-?	NR	6E-6	(AA)	0.454888	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
843	chr17	33880499	33880499	rs36064799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q12	RP11-1094M14.12	rs36064799-CA	0.0462	1E-15		0.06822157	[0.051-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33880499	33880499	rs36064799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q12	RP11-1094M14.12	rs36064799-CA	0.0463	1E-14		0.06594627	[0.049-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33880893	33880894	rs321610	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q12	NR	rs321610-G	0.687	1E-9		0.00705301	[0.0048-0.0093] unit increase	NR [9732723] (imputed)	N
843	chr17	33881016	33881017	rs116169465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14, RP11-1094M14.12	rs116169465-C	0.021249	5E-30		0.08885076	[0.074-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33883669	33883670	rs28671232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14	rs28671232-C	0.017614	8E-28		0.09354149	[0.077-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33884123	33884124	rs147396945	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	17q12		rs147396945-?	NR	8E-16		0.170749	[0.13-0.22] unit increase	NR [9800000] (imputed)	N
843	chr17	33884123	33884124	rs147396945	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	17q12		rs147396945-?	NR	1E-20		0.193905	[0.15-0.24] unit decrease	NR [9800000] (imputed)	N
843	chr17	33884123	33884124	rs147396945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14	rs147396945-T	0.00126000000000004	5E-14		0.26866686	[0.2-0.34] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33884687	33884688	rs199663871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14	rs199663871-A	0.00283199999999995	3E-31		0.24539408	[0.2-0.29] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33884687	33884688	rs199663871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q12	SLFN14	rs199663871-A	0.00280999999999998	2E-13		0.15540248	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33884803	33884804	rs10512472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q12	SLFN14	rs10512472-C	0.174032	5E-47		0.04281309	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33884803	33884804	rs10512472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	SLFN14	rs10512472-C	0.174029	2E-110		0.0894503	[0.082-0.097] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33884803	33884804	rs10512472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q12	SLFN14	rs10512472-C	0.174011	2E-109		0.089665115	[0.082-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33884803	33884804	rs10512472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs10512472-T	0.823498	2E-127				Affymetrix, Illumina [17210439] (imputed)	N
843	chr17	33884803	33884804	rs10512472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q12	NR	rs10512472-T	0.825895	3E-126		0.060379	[0.055-0.065] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
843	chr17	33884803	33884804	rs10512472	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	17q12	SNORD7, AP2B1	rs10512472-C	NR	2E-14		3.636	[2.7-4.57] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
843	chr17	33885903	33885904	rs7503168	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q12		rs7503168-A	0.827	1E-63				Affymetrix [10369434] (imputed)	N
843	chr17	33885903	33885904	rs7503168	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs7503168-G	0.217369	2E-176				Affymetrix, Illumina [24588908] (imputed)	N
843	chr17	33885903	33885904	rs7503168	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q12	NR	rs7503168-G	0.174763	4E-160		0.064845	[0.06-0.07] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
843	chr17	33885903	33885904	rs7503168	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q12	SLFN14	rs7503168-G	0.1734	3E-17		0.04060222	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33886072	33886074	rs144233266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q12		rs144233266-T	NR	6E-98		0.064	[0.058-0.07] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
843	chr17	33886072	33886074	rs144233266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	SLFN14	rs144233266-T	0.175098	5E-265		0.16342601	[0.15-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33886763	33886764	rs145171343	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q12		rs145171343-C	0.984	4E-8				Affymetrix [10369434] (imputed)	N
843	chr17	33886763	33886764	rs145171343	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q12		rs145171343-C	0.984	2E-13				Affymetrix [10369434] (imputed)	N
843	chr17	33886763	33886764	rs145171343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q12	SLFN14	rs145171343-T	0.015862	1E-9		0.05733856	[0.039-0.076] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33886763	33886764	rs145171343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	SLFN14	rs145171343-T	0.015865	9E-33		0.11191765	[0.094-0.13] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33886763	33886764	rs145171343	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q12	SLFN14	rs145171343-T	0.0171	8E-33		0.1722886	[0.14-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33886763	33886764	rs145171343	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q12	SLFN14	rs145171343-T	0.0171	5E-10		0.09053362	[0.062-0.119] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33890082	33890083	rs9908158	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q12	RP11-1094M14.14, SLFN14, RP11-1094M14.1	rs9908158-C	0.348	7E-40		0.04985291	[0.042-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33890082	33890083	rs9908158	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q12	RP11-1094M14.14, SLFN14, RP11-1094M14.1	rs9908158-C	0.3479	4E-16		0.0311769	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33890975	33890976	rs12452797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	RP11-1094M14.11, RP11-1094M14.1, RP11-1094M14.14	rs12452797-G	0.087685	2E-10		0.033545848	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33892067	33892068	rs2840044	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	17q12	SLFN14	rs2840044-?	0.33	8E-6	(Breast cancer, overal toxicity, multivariable analysis)	1.56		Illumina [2417493] (imputed)	N
843	chr17	33899846	33899848	rs201192867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q12	RP11-1094M14.11	rs201192867-C	0.016528	2E-140		0.22977094	[0.21-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33899846	33899848	rs201192867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q12	RP11-1094M14.11	rs201192867-C	0.016526	2E-45		0.12862538	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33899846	33899848	rs201192867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q12	RP11-1094M14.11	rs201192867-C	0.017	7E-11		0.09551083	[0.067-0.124] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33902283	33902284	rs1046321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	PEX12	rs1046321-C	0.454165	1E-62		0.053171404	[0.047-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33902283	33902284	rs1046321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q12	PEX12	rs1046321-C	0.454177	1E-55		0.04975853	[0.044-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33902283	33902284	rs1046321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q12	PEX12	rs1046321-C	0.454373	1E-11		0.015127593	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33902283	33902284	rs1046321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q12	PEX12	rs1046321-C	0.454202	2E-95		0.048551843	[0.044-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33902283	33902284	rs1046321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q12	PEX12	rs1046321-C	0.454207	4E-90		0.04718407	[0.043-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33902283	33902284	rs1046321	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q12	PEX12	rs1046321-C	NR	4E-12		0.0269867	[0.019-0.035] unit increase	Affymetrix [16832071] (imputed)	N
843	chr17	33902283	33902284	rs1046321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q12	PEX12	rs1046321-C	0.4542	5E-13		0.02575509	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33921337	33921338	rs117789363	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with any chromosomal aberration	417 European ancestry cases, 5,199 European ancestry controls	NA	17q12		rs117789363-C	0.05	4E-6		1.83		Illumina [10258281] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.042644	8E-118		0.13537724	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.04264	8E-101		0.12340378	[0.11-0.13] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.042636	5E-9		0.033190083	[0.022-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.042654	2E-11		0.03727534	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.042594	1E-56		0.08989652	[0.079-0.101] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q12	AP2B1	rs74505413-G	0.042586	3E-55		0.0887288	[0.078-0.1] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33923551	33923552	rs74505413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q12	AP2B1	rs74505413-G	0.0428	2E-81		0.1700208	[0.15-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33923551	33923552	rs74505413	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q12	AP2B1	rs74505413-G	0.0428	7E-76		0.1640979	[0.15-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33923606	33923607	rs11653357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q12	AP2B1	rs11653357-A	0.1739	1E-99		0.1002962	[0.091-0.11] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33923606	33923607	rs11653357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q12	AP2B1	rs11653357-A	0.1737	1E-40		0.06404226	[0.055-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33925754	33925755	rs225295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	AP2B1	rs225295-G	0.654881	8E-11		0.034290615	[0.024-0.045] unit increase	Affymetrix [93095623] (imputed)	N
843	chr17	33928944	33928945	rs225289	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q12		rs225289-T	0.1693	1E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
843	chr17	33931083	33931084	rs225285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q12	Intergenic	rs225285-C	0.7248	3E-10	(MTAG)	0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
843	chr17	33944054	33944055	rs16971217	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	17q12	SNORD7, AP2B1	rs16971217-C	NR	4E-12		0.009	[0.007-0.011] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
843	chr17	33946106	33946107	rs225245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q12		rs225245-?	NR	4E-33				NR [~ 8900000] (imputed)	N
843	chr17	33946106	33946107	rs225245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q12	AP2B1	rs225245-G	0.4561	1E-130		0.08756592	[0.081-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33946106	33946107	rs225245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q12	AP2B1	rs225245-G	0.4562	5E-119		0.08358499	[0.077-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33946106	33946107	rs225245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q12	AP2B1	rs225245-G	0.4562	6E-42		0.0488401	[0.042-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
843	chr17	33946106	33946107	rs225245	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q12	AP2B1	rs225245-G	0.4562	2E-39		0.04732168	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr17	33959246	33959247	rs11868206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q12	AP2B1	rs11868206-A	0.1782	5E-38		0.06073825	[0.052-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr17	33959362	33959363	rs186558953	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs186558953-C	NR	4E-16		0.5681	[0.43-0.7] SD units increase	NR [10700000] (imputed)	N
844	chr17	33968101	33968102	rs16971241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q12	AP2B1	rs16971241-G	0.020938	3E-12		0.054587968	[0.039-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
844	chr17	33974480	33974481	rs9897552	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q12		rs9897552-G	0.823	5E-28				Affymetrix [10369434] (imputed)	N
844	chr17	33976618	33976619	rs9915021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q12	AP2B1	rs9915021-T	0.064	3E-29		0.0822496	[0.068-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
844	chr17	33976618	33976619	rs9915021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q12	AP2B1	rs9915021-T	0.064	2E-28		0.08090267	[0.067-0.095] unit increase	Affymetrix [~ 2500000] (imputed)	N
844	chr17	33980565	33980566	rs2011528	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q12	AP2B1	rs2011528-C	0.17459999999999998	3E-11		1.0334471		Affymetrix [11880941] (imputed)	N
844	chr17	33985464	33985465	rs533229216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q12	AP2B1	rs533229216-T	0.0027	8E-12		0.2463744	[0.18-0.32] unit increase	Affymetrix [~ 2500000] (imputed)	N
844	chr17	34007801	34007802	rs4795085	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YBX1	5,362 Icelandic ancestry individuals	NA	17q12		rs4795085-G	0.4971	6E-13		0.132704	[0.097-0.169] unit increase	Illumina [7506463] (imputed)	N
844	chr17	34007801	34007802	rs4795085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q12	CTC-507E2.1	rs4795085-A	0.455559	9E-14		0.017089613	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
844	chr17	34007810	34007811	rs112346425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q12	CTC-507E2.1	rs112346425-C	0.0383	6E-31		0.1097456	[0.091-0.128] unit decrease	Affymetrix [~ 2500000] (imputed)	N
844	chr17	34034058	34034059	rs226090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17q12		rs226090-?	NR	1E-8				NR [~ 8900000] (imputed)	N
844	chr17	34050933	34050934	rs9649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs9649-T	0.1749	6E-9		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
844	chr17	34050933	34050934	rs9649	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs9649-T	0.1749	1E-9	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
844	chr17	34052512	34052513	rs17638867	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17q12	AP2B1	rs17638867-?	NR	2E-9		0.014580288	[0.0098-0.0193] unit increase	NR [7306098]	N
844	chr17	34065902	34065903	rs73990293	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs73990293-C	0.08	7E-7		6.55	[NR] unit increase	Affymetrix [7884700] (imputed)	N
844	chr17	34072554	34072555	rs3744374	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17q12	NR	rs3744374-?	NR	2E-6		0.0561	[0.033-0.079] unit increase	Illumina [at least 560000] (imputed)	N
845	chr17	34088655	34088656	rs76960253	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs76960253-C	NR	5E-19		0.5233	[0.41-0.64] SD units decrease	NR [10700000] (imputed)	N
845	chr17	34100326	34100327	rs118098940	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	17q12	MMP28, AP2B1, RPL17P42, RASL10B, GAS2L2, C17orf50	rs118098940-A	0.03	4E-7		2.32	[1.42-3.22] unit decrease	Illumina [8257341] (imputed)	N
845	chr17	34114484	34114484	rs144461822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q12	MMP28	rs144461822-TTTTG	0.030583	1E-11		0.046007566	[0.033-0.059] unit increase	Affymetrix [93095623] (imputed)	N
845	chr17	34114484	34114484	rs144461822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q12	MMP28	rs144461822-TTTTG	0.030604	1E-9		0.040458363	[0.027-0.054] unit increase	Affymetrix [93095623] (imputed)	N
845	chr17	34114484	34114484	rs144461822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q12	MMP28	rs144461822-TTTTG	0.030609	3E-9		0.039555382	[0.026-0.053] unit increase	Affymetrix [93095623] (imputed)	N
845	chr17	34140453	34140454	rs8080959	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL5	5,363 Icelandic ancestry individuals	NA	17q12		rs8080959-A	0.187	3E-57		0.376757	[0.33-0.42] unit decrease	Illumina [7506463] (imputed)	N
845	chr17	34148082	34148083	rs4251739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q12	AC015849.13, TAF15, AC015849.19	rs4251739-A	0.0271	6E-13		0.07934598	[0.058-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
845	chr17	34148082	34148083	rs4251739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q12	AC015849.13, TAF15, AC015849.19	rs4251739-A	0.0271	7E-12		0.07566745	[0.054-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
845	chr17	34152923	34152924	rs181968393	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	Change in high-sensitivity cardiac troponin I concentration	5,178 European ancestry individuals	NA	17q12		rs181968393-T	0.0017	3E-7		1.48	[0.91-2.05] unit increase	Illumina [21233433] (imputed)	N
845	chr17	34163564	34163565	rs4239252	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL5, C17orf50, RDM1, LYZL6, TAF15, RP1-161P9.5, MMP28, AC015849.12, AC015849.13, AC015849.19, AC015849.14, HEATR9, AC015849.2, 7SK, AC015849.16, LRRC37A9P	rs4239252-A	0.2113454	8E-11	(EA, C-C motif chemokine 5)	0.3458	[0.24-0.45] unit decrease	Affymetrix [509946]	N
845	chr17	34183955	34183956	rs78655848	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DLL3	5,352 Icelandic ancestry individuals	NA	17q12		rs78655848-A	0.1888	6E-43		0.305748	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
845	chr17	34183955	34183956	rs78655848	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL5	5,366 Icelandic ancestry individuals	NA	17q12		rs78655848-A	0.1888	7E-96		0.475557	[0.43-0.52] unit decrease	Illumina [7506463] (imputed)	N
845	chr17	34183955	34183956	rs78655848	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL5	rs78655848-G	0.8175	2E-54	(CCL5, 2523_31_3)	0.4781633	[0.42-0.54] unit increase	Illumina [> 1000000] (imputed)	N
845	chr17	34207779	34207780	rs2107538	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL5	rs2107538-C	0.81890625	5E-35	(CCL5, 5480_49_3)	0.38927695	[0.33-0.45] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34226271	34226272	rs4796128	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	RANTES plasma levels	400 French ancestry individuals	NA	17q12		rs4796128-G	NR	7E-6		0.16	[0.1-0.22] ng/mL decrease	Illumina [5201092] (imputed)	N
846	chr17	34257312	34257313	rs9907295	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	17q12	NR	rs9907295-C		8E-7		0.1319	[0.079-0.185] SD units increase	NR [10700000] (imputed)	N
846	chr17	34261017	34261018	rs62078244	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs62078244-A	0.02091	5E-11	(TPM3)	0.2765	NR unit increase	Illumina [1671387] (imputed)	N
846	chr17	34262253	34262254	rs17676662	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	RDM1, LYZL6	rs17676662-G	0.1341709	1E-18	(EA, C-C motif chemokine 14)	0.557	[0.44-0.68] unit decrease	Affymetrix [509946]	N
846	chr17	34265399	34265400	rs187439464	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs187439464-T	0.06	3E-7		7.33	[NR] unit increase	Affymetrix [7884700] (imputed)	N
846	chr17	34274869	34274870	rs113018692	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	17q12		rs113018692-C	0.142	6E-6		1.51	[1.263-1.806]	Affymetrix [7975321] (imputed)	N
846	chr17	34296011	34296012	rs1635281	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs1635281-G	0.833	7E-29	(C-C motif chemokine 16, CCL16.4913.78.1)	0.37	[0.31-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34302609	34302610	rs1635280	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,364 Icelandic ancestry individuals	NA	17q12		rs1635280-C	0.1778	1E-14		0.183615	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
846	chr17	34303770	34303771	rs33995560	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL16, CTB-186H2.3, CCL14, CCL15-CCL14	rs33995560-C	0.08174524	2E-95	(C-C motif chemokine 16)	1.393	[1.28-1.51] unit decrease	Affymetrix [509946]	N
846	chr17	34305163	34305164	rs11080369	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	17q12	NR	rs11080369-?	NR	2E-30	(HCC-4)	0.79	[0.65-0.93] unit decrease	Illumina [4020654] (imputed)	N
846	chr17	34305163	34305164	rs11080369	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	NR	rs11080369-?	NR	1E-92	(EA, C-C motif chemokine 16)			Affymetrix [509946]	N
846	chr17	34305163	34305164	rs11080369	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs11080369-?		8E-68	(CCL16)	1.121	[NR] unit decrease	Illumina [NR]	N
846	chr17	34305163	34305164	rs11080369	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs11080369-?		2E-6	(HGF)	0.0482	[NR] unit decrease	Illumina [NR]	N
846	chr17	34306105	34306106	rs10445391	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	HCC 4 plasma levels	400 French ancestry individuals	NA	17q12		rs10445391-A	NR	2E-31		0.758	[0.65-0.87] ng/mL decrease	Illumina [5201092] (imputed)	N
846	chr17	34306105	34306106	rs10445391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs10445391-A	0.9365625	9E-198	(CCL16, 4913_78_1)	1.3999735	[1.31-1.49] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34306105	34306106	rs10445391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs10445391-A	0.9365625	6E-12	(CCL15, 3509_1_1)	0.33784816	[0.24-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34306105	34306106	rs10445391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs10445391-A	0.9365625	2E-111	(KLRC3, 7795_14_3)	1.0663002	[0.98-1.16] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34306105	34306106	rs10445391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs10445391-A	0.9365625	2E-11	(CCL15, 14109_15_3)	0.3262413	[0.23-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34306105	34306106	rs10445391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs10445391-A	0.9365625	1E-76	(CST8, 10572_65_3)	0.9076942	[0.81-1] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34307456	34307457	rs112689088	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,354 Icelandic ancestry individuals	NA	17q12		rs112689088-C	0.07894	9E-276		1.08408	[1.02-1.14] unit decrease	Illumina [7506463] (imputed)	N
846	chr17	34307456	34307457	rs112689088	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST8	5,353 Icelandic ancestry individuals	NA	17q12		rs112689088-C	0.07894	4E-188		0.930972	[0.87-0.99] unit decrease	Illumina [7506463] (imputed)	N
846	chr17	34307456	34307457	rs112689088	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL16	rs112689088-C	0.098	6E-186	(Cystatin-8, CST8.10572.65.3)	1.11	[1.03-1.19] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34307456	34307457	rs112689088	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL16	rs112689088-C	0.098	3E-450	(C-C motif chemokine 16, CCL16.4913.78.1)	1.52	[1.46-1.58] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34307456	34307457	rs112689088	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL16	rs112689088-C	0.098	1E-59	(NKG2-E type II integral membrane protein, KLRC3.7795.14.3)	0.67	[0.59-0.75] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34310701	34310702	rs41341749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL14, CCL16, CTB-186H2.3, CCL15-CCL14, CCL15	rs41341749-G	0.06068205	6E-19	(EA, C-C motif chemokine 18)	0.7553	[0.59-0.92] unit increase	Affymetrix [509946]	N
846	chr17	34310701	34310702	rs41341749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL14, CCL16, CTB-186H2.3, CCL15-CCL14, CCL15	rs41341749-G	0.06068205	3E-43	(C-C motif chemokine 14)	1.171	[1.01-1.33] unit decrease	Affymetrix [509946]	N
846	chr17	34310701	34310702	rs41341749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL14, CCL16, CTB-186H2.3, CCL15-CCL14, CCL15	rs41341749-G	0.06068205	3E-32	(C-C motif chemokine 23)	1.032	[0.87-1.2] unit increase	Affymetrix [509946]	N
846	chr17	34310701	34310702	rs41341749	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL14, CCL16, CTB-186H2.3, CCL15-CCL14, CCL15	rs41341749-G	0.06068205	1E-9	(EA, C-C motif chemokine 3)	0.5436	[0.37-0.72] unit increase	Affymetrix [509946]	N
846	chr17	34311386	34311387	rs16971802	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs16971802-C	0.051	5E-22	(C-C motif chemokine 14, CCL14.2900.53.3)	0.53	[0.41-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34311386	34311387	rs16971802	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL14, CCL16, CTB-186H2.3, CCL15-CCL14, CCL15	rs16971802-C	0.06018054	1E-40	(EA, C-C motif chemokine 14)	1.151	[0.99-1.31] unit decrease	Affymetrix [509946]	N
846	chr17	34312336	34312337	rs9903158	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL14	rs9903158-C	0.056	4E-104	(C-C motif chemokine 14, CCL14.2900.53.3)	1.08	[0.98-1.18] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34312580	34312581	rs72830000	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,364 Icelandic ancestry individuals	NA	17q12		rs72830000-A	0.03766	3E-85		0.919096	[0.83-1.01] unit increase	Illumina [7506463] (imputed)	N
846	chr17	34312580	34312581	rs72830000	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL23	rs72830000-A	0.056	1E-89	(C-C motif chemokine 23, CCL23.2913.1.2)	1.02	[0.92-1.12] unit increase	Affymetrix [10572788] (imputed)	N
846	chr17	34313914	34313915	rs9892586	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL23	rs9892586-A	0.9634375	4E-41	(CCL23, 2913_1_2)	0.8395819	[0.72-0.96] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34318564	34318565	rs2056492	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CTB-186H2.3, CCL14, CCL15-CCL14, CCL15, RP11-104J23.1, RP11-104J23.2, CCL23	rs2056492-C	0.01506024	1E-12	(EA, C-C motif chemokine 15)	1.271	[0.93-1.62] unit increase	Affymetrix [509946]	N
846	chr17	34319063	34319064	rs7217473	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	17q12		rs7217473-T	0.04986	6E-22		0.410937	[0.33-0.49] unit increase	Illumina [7506463] (imputed)	N
846	chr17	34319063	34319064	rs7217473	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	17q12	CCL14, CCL15	rs7217473-T	0.05	3E-6	(recessive)	0.85	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
846	chr17	34325531	34325532	rs2075746	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	RP11-104J23.1, CCL15-CCL14, CCL15	rs2075746-T	0.4385081	4E-12	(C-C motif chemokine 15)	0.2965	[0.21-0.38] unit decrease	Affymetrix [509946]	N
846	chr17	34326214	34326215	rs712048	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MPIF 1 plasma levels	400 French ancestry individuals	NA	17q12		rs712048-C	NR	2E-13		0.238	[0.17-0.31] ng/mL decrease	Illumina [5201092] (imputed)	N
846	chr17	34326214	34326215	rs712048	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,362 Icelandic ancestry individuals	NA	17q12		rs712048-A	0.09707	8E-87		0.590025	[0.53-0.65] unit decrease	Illumina [7506463] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	9E-19	(CCL16, 4913_78_1)	0.36742094	[0.29-0.45] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	7E-47	(CCL23, 3028_36_2)	0.56952006	[0.49-0.65] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	4E-9	(CCL4L1, 2781_63_2)	0.24882737	[0.17-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	3E-48	(CCL15, 3509_1_1)	0.5928205	[0.51-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	3E-14	(KLRC3, 7795_14_3)	0.3117407	[0.23-0.39] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	2E-38	(CCL14, 2900_53_3)	0.52266234	[0.44-0.6] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	2E-10	(CST8, 10572_65_3)	0.26616627	[0.18-0.35] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs712048-C	0.90046875	1E-61	(CCL15, 14109_15_3)	0.66118515	[0.58-0.74] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34326214	34326215	rs712048	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL23	rs712048-C	0.874	2E-94	(Ck-beta-8-1, CCL23.3028.36.2)	0.73	[0.65-0.81] unit increase	Affymetrix [10572788] (imputed)	N
846	chr17	34327922	34327923	rs854624	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL15	rs854624-T	0.931	3E-411	(C-C motif chemokine 15, CCL15.14109.15.3)	1.69	[1.61-1.77] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34327922	34327923	rs854624	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	NR	rs854624-?	NR	2E-119	(EA, C-C motif chemokine 15)			Affymetrix [509946]	N
846	chr17	34328460	34328461	rs854625	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CCL23 levels	982 Scottish ancestry individuals	NA	17q12	NR	rs854625-A	0.05871	6E-15		0.79915	[0.6-1] unit decrease	Illumina [7903493] (imputed)	N
846	chr17	34328460	34328461	rs854625	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	17q12	CCL15	rs854625-A	0.12	5E-25	(CCL15)	0.47	[0.39-0.55] unit increase	Affymetrix [622716]	N
846	chr17	34328460	34328461	rs854625	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	17q12	NR	rs854625-?	NR	7E-10	(C-C motif chemokine 15)			Illumina [514227]	N
846	chr17	34328654	34328661	rs201274146	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		CCL15	rs201274146-C	0.931	4E-341	(C-C motif chemokine 15, CCL15.3509.1.1)	1.61	[1.53-1.69] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34329043	34329044	rs41508645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL15	5,366 Icelandic ancestry individuals	NA	17q12		rs41508645-G	0.04447	3E-293		1.47123	[1.39-1.55] unit increase	Illumina [7506463] (imputed)	N
846	chr17	34334447	34334448	rs7221769	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL15, RP11-104J23.1, CCL15-CCL14, RP11-104J23.2, CCL23	rs7221769-C	0.07221665	6E-13	(EA, C-C motif chemokine 14)	0.5809	[0.42-0.74] unit increase	Affymetrix [509946]	N
846	chr17	34334447	34334448	rs7221769	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL15, RP11-104J23.1, CCL15-CCL14, RP11-104J23.2, CCL23	rs7221769-C	0.07221665	4E-93	(C-C motif chemokine 15)	1.52	[1.39-1.65] unit increase	Affymetrix [509946]	N
846	chr17	34335693	34335694	rs7222922	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL14	5,363 Icelandic ancestry individuals	NA	17q12		rs7222922-T	0.08487	5E-261		1.02562	[0.97-1.08] unit decrease	Illumina [7506463] (imputed)	N
846	chr17	34335693	34335694	rs7222922	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL14	rs7222922-C	0.9209375	9E-101	(CCL14, 2900_53_3)	0.9386017	[0.86-1.02] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	9E-96	(CCL15, 3509_1_1)	1.3170513	[1.2-1.44] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	6E-12	(KLRC3, 7795_14_3)	0.450107	[0.32-0.58] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	3E-16	(CCL23, 3028_36_2)	0.5192221	[0.4-0.64] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	3E-12	(CST8, 10572_65_3)	0.46533304	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	2E-18	(CCL16, 4913_78_1)	0.57723397	[0.45-0.71] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336509	34336510	rs1734959	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734959-G	0.96328125	1E-127	(CCL15, 14109_15_3)	1.4874294	[1.37-1.6] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	9E-96	(CCL15, 3509_1_1)	1.3170513	[1.2-1.44] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	6E-12	(KLRC3, 7795_14_3)	0.450107	[0.32-0.58] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	3E-16	(CCL23, 3028_36_2)	0.5192221	[0.4-0.64] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	3E-12	(CST8, 10572_65_3)	0.46533304	[0.34-0.6] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	2E-18	(CCL16, 4913_78_1)	0.57723397	[0.45-0.71] unit increase	Illumina [> 1000000] (imputed)	N
846	chr17	34336560	34336561	rs1734958	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs1734958-A	0.96328125	1E-127	(CCL15, 14109_15_3)	1.4874294	[1.37-1.6] unit decrease	Illumina [> 1000000] (imputed)	N
846	chr17	34338882	34338883	rs1617208	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs1617208-?		6E-29	(CCL23)	0.5071	[NR] unit decrease	Illumina [NR]	N
846	chr17	34340283	34340284	rs1003645	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	17q12	CCL23	rs1003645-C	0.28	3E-100	(CCL23)	0.63	[0.59-0.67] unit decrease	Affymetrix [622716]	N
846	chr17	34340283	34340284	rs1003645	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL23, CCL15-CCL14, CTB-186H2.3, CCL15, RP11-104J23.1, RP11-104J23.2	rs1003645-C	0.2170854	2E-19	(Ck-beta-8-1)	0.4715	[0.37-0.57] unit decrease	Affymetrix [509946]	N
846	chr17	34340324	34340325	rs80219613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs80219613-T	0.014	2E-40	(C-C motif chemokine 23, CCL23.2913.1.2)	1.39	[1.19-1.59] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr17	34340324	34340325	rs80219613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs80219613-T	0.014	2E-26	(Ck-beta-8-1, CCL23.3028.36.2)	1.12	[0.9-1.34] unit decrease	Affymetrix [10572788] (imputed)	N
847	chr17	34344221	34344222	rs117321474	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs117321474-C	0.025	6E-19	(C-C motif chemokine 23, CCL23.2913.1.2)	0.72	[0.56-0.88] unit decrease	Affymetrix [10572788] (imputed)	N
847	chr17	34350932	34350933	rs76480185	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,364 Icelandic ancestry individuals	NA	17q12		rs76480185-T	0.0122	1E-29		0.937313	[0.77-1.1] unit decrease	Illumina [7506463] (imputed)	N
847	chr17	34352665	34352666	rs854658	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	Intergenic	rs854658-G	0.4894684	2E-12	(EA, C-C motif chemokine 14)	0.3018	[0.22-0.38] unit decrease	Affymetrix [509946]	N
847	chr17	34357144	34357145	rs854666	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q12	CCL14	rs854666-?	NR	8E-6	(pyruvate)	0.22078687	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
847	chr17	34358296	34358297	rs712046	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,364 Icelandic ancestry individuals	NA	17q12		rs712046-T	0.4314	3E-16		0.150709	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
847	chr17	34358296	34358297	rs712046	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	17q12	CCL23	rs712046-?	NR	3E-7	(FEV1/FVC)			Affymetrix [246010]	N
847	chr17	34359412	34359413	rs115689251	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	17q12	intergenic	rs115689251-?	NR	1E-6		1.924	[1-2.84] unit increase	Illumina [at least 13000000] (imputed)	N
847	chr17	34359450	34359451	rs854676	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs854676-C	0.485	5E-27	(Ck-beta-8-1, CCL23.3028.36.2)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
847	chr17	34359971	34359972	rs854674	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	NR	rs854674-T	0.486	1E-13	(C-C motif chemokine 23, CCL23.2913.1.2)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
847	chr17	34363702	34363703	rs2735477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL23	5,362 Icelandic ancestry individuals	NA	17q12		rs2735477-G	0.4253	2E-27		0.197416	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
847	chr17	34366897	34366898	rs143733871	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs143733871-C	NR	2E-27		0.7118	[0.58-0.84] SD units increase	NR [10700000] (imputed)	N
847	chr17	34371658	34371659	rs972317	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	17q12	NR	rs972317-?	NR	7E-22	(PARC)	0.5	[0.4-0.6] unit increase	Illumina [4020654] (imputed)	N
847	chr17	34371658	34371659	rs972317	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	17q12	NR	rs972317-?	NR	3E-10	(LD78-beta)	0.2	[0.14-0.26] unit increase	Illumina [4020654] (imputed)	N
847	chr17	34371658	34371659	rs972317	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	17q12	NR	rs972317-?	NR	1E-11	(MIP-1a)	0.35	[0.25-0.45] unit increase	Illumina [4020654] (imputed)	N
847	chr17	34372005	34372006	rs9904601	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	Intergenic	rs9904601-A	0.1169679	2E-43	(C-C motif chemokine 18)	0.8634	[0.75-0.98] unit increase	Affymetrix [509946]	N
847	chr17	34372005	34372006	rs9904601	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	Intergenic	rs9904601-A	0.1169679	1E-17	(EA, C-C motif chemokine 3)	0.5713	[0.44-0.7] unit increase	Affymetrix [509946]	N
847	chr17	34375831	34375832	rs35871176	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	Intergenic	rs35871176-T	0.4754263	7E-13	(EA, C-C motif chemokine 18)	0.3077	[0.22-0.39] unit decrease	Affymetrix [509946]	N
847	chr17	34385213	34385214	rs854461	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC3A2	5,351 Icelandic ancestry individuals	NA	17q12		rs854461-C	0.08655	3E-14		0.242359	[0.18-0.3] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34386089	34386090	rs854462	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	NR	rs854462-?	NR	3E-47	(EA, C-C motif chemokine 18)			Affymetrix [509946]	N
847	chr17	34386398	34386399	rs16971895	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CCL18	rs16971895-A	0.04221106	1E-12	(EA, C-C motif chemokine 3-like 1)	0.7756	[0.56-0.99] unit increase	Affymetrix [509946]	N
847	chr17	34389360	34389361	rs854469	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	PARC plasma levels	400 French ancestry individuals	NA	17q12		rs854469-A	NR	1E-24		0.416	[0.35-0.48] ng/mL increase	Illumina [5201092] (imputed)	N
847	chr17	34389360	34389361	rs854469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL3L3	5,350 Icelandic ancestry individuals	NA	17q12		rs854469-G	0.1162	3E-59		0.43719	[0.38-0.49] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34389360	34389361	rs854469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL3	5,368 Icelandic ancestry individuals	NA	17q12		rs854469-G	0.1162	2E-122		0.670053	[0.61-0.73] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34389360	34389361	rs854469	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL18	5,367 Icelandic ancestry individuals	NA	17q12		rs854469-G	0.1162	4E-237		0.887633	[0.83-0.94] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34389360	34389361	rs854469	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs854469-?		3E-36	(CCL18)	0.5868	[NR] unit increase	Illumina [NR]	N
847	chr17	34389913	34389914	rs1102934	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL3L1	rs1102934-A	0.886875	2E-34	(CCL3L1, 2783_18_2)	0.46764043	[0.39-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
847	chr17	34389913	34389914	rs1102934	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL3	rs1102934-A	0.886875	3E-73	(CCL3, 3040_59_1)	0.6823921	[0.61-0.75] unit decrease	Illumina [> 1000000] (imputed)	N
847	chr17	34391616	34391617	rs2015086	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL3L1	rs2015086-G	0.131	3E-42	(C-C motif chemokine 3-like 1, CCL3L1.2783.18.2)	0.5	[0.42-0.58] unit increase	Affymetrix [10572788] (imputed)	N
847	chr17	34392012	34392013	rs2015052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL18	5,367 Icelandic ancestry individuals	NA	17q12		rs2015052-G	0.03227	3E-123		1.18547	[1.09-1.28] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34392879	34392880	rs712042	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	CCL18	rs712042-A	0.886875	7E-124	(CCL18, 3044_3_2)	0.8877302	[0.82-0.96] unit decrease	Illumina [> 1000000] (imputed)	N
847	chr17	34392879	34392880	rs712042	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q12	CCL3	rs712042-A	0.862	1E-94	(C-C motif chemokine 3, CCL3.3040.59.1)	0.71	[0.65-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
847	chr17	34413541	34413542	rs1719124	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXL	5,358 Icelandic ancestry individuals	NA	17q12		rs1719124-T	0.2449	2E-32		0.259776	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34414635	34414636	rs2188974	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	17q12	CCL3	rs2188974-A	0.81	8E-35		0.31	unit decrease	Illumina [5270624] (imputed)	N
847	chr17	34432402	34432403	rs1634517	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs1634517-A	0.24	2E-320		0.3729	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
847	chr17	34433963	34433964	rs2687507	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs2687507-C	0.74734375	5E-18	(AXL, 10574_10_3)	0.25240478	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
847	chr17	34433963	34433964	rs2687507	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q12	NR	rs2687507-C	0.74734375	1E-16	(CCL4L1, 2781_63_2)	0.23913714	[0.18-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
847	chr17	34440682	34440683	rs1634529	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	17q12		rs1634529-T	0.2494	8E-28		0.235836	[0.19-0.28] unit increase	Illumina [7506463] (imputed)	N
847	chr17	34443391	34443392	rs562262126	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	17q12		rs562262126-G	0.009813	2E-14		0.734497	[0.55-0.92] unit decrease	Illumina [7506463] (imputed)	N
847	chr17	34458678	34458679	rs189886302	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	17q12	NR	rs189886302-T	0.03	3E-7		13.08	[NR] unit increase	Affymetrix [7884700] (imputed)	N
847	chr17	34461902	34461903	rs2376468	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs2376468-C	0.77	2E-17		0.1339	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
847	chr17	34463093	34463094	rs16972050	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs16972050-T	0.88	2E-35		0.1993	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
847	chr17	34463322	34463323	rs8065403	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	17q12	NR	rs8065403-?	NR	4E-16		8.14	NR z score decrease	Illumina [at least 830937] (imputed)	N
847	chr17	34471238	34471239	rs2214302	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs2214302-C	0.39	1E-25		0.16	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
848	chr17	34475130	34475131	rs3213636	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q12	CCL4, TBC1D3B	rs3213636-A	0.2385	4E-10		6.262	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
848	chr17	34475130	34475131	rs3213636	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17q12	NR	rs3213636-A	0.2465	5E-13		0.1054	[0.077-0.134] unit increase	Illumina [~ 10600000] (imputed)	N
848	chr17	34475130	34475131	rs3213636	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q12	CTB-91J4.1	rs3213636-A	0.1891348	6E-15	(EA, C-C motif chemokine 4-like)	0.4537	[0.34-0.57] unit decrease	Affymetrix [509946]	N
848	chr17	34475130	34475131	rs3213636	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs3213636-?		8E-21	(CCL4)	0.4471	[NR] unit decrease	Illumina [NR]	N
848	chr17	34479321	34479322	rs144563201	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs144563201-G	NR	2E-91		0.6492	[0.59-0.71] SD units decrease	NR [10700000] (imputed)	N
848	chr17	34485745	34485746	rs142499028	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs142499028-G	NR	9E-29	(conditioned on rs113877493,rs76842834)	0.803	SD units increase	NR [10700000] (imputed)	N
850	chr17	34812272	34812273	rs113877493	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	17q12	NR	rs113877493-?	NR	9E-10	(CCL4)	0.444576	[0.3-0.59] unit decrease	Illumina [11901634] (imputed)	N
850	chr17	34812272	34812273	rs113877493	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	CCL4L1	rs113877493-C	NR	2E-173		0.6124	[0.57-0.66] SD units increase	NR [10700000] (imputed)	N
850	chr17	34819135	34819136	rs6607368	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	17q12	CCL4	rs6607368-A	0.8	2E-47		0.51	unit increase	Illumina [5270624] (imputed)	N
850	chr17	34819190	34819191	rs4796217	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	17q12	TBC1D3G	rs4796217-?	NR	7E-21	(Macrophage inflammatory protein-1b)			Illumina [up to 10879115] (imputed)	N
850	chr17	34819190	34819191	rs4796217	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17q12	CCL4L2	rs4796217-?	0.34	4E-21	(MIPb)			Illumina [496032]	N
850	chr17	34819749	34819750	rs8064426	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MIP 1_beta plasma levels	400 French ancestry individuals	NA	17q12		rs8064426-G	NR	1E-8		0.375	[0.26-0.49] pg/mL decrease	Illumina [5201092] (imputed)	N
850	chr17	34819749	34819750	rs8064426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	17q12		rs8064426-A	0.1033	4E-71		0.538081	[0.48-0.6] unit decrease	Illumina [7506463] (imputed)	N
850	chr17	34819749	34819750	rs8064426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXL	5,358 Icelandic ancestry individuals	NA	17q12		rs8064426-A	0.1033	2E-191		0.859367	[0.8-0.92] unit decrease	Illumina [7506463] (imputed)	N
850	chr17	34819749	34819750	rs8064426	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs8064426-A	0.15	1E-192		0.425	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
850	chr17	34819749	34819750	rs8064426	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	17q12	NR	rs8064426-?		7E-15	(CCL4)	0.5176	[NR] unit decrease	Illumina [NR]	N
850	chr17	34820995	34820996	rs9911791	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 3 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs9911791-A	0.82	2E-41		0.1571	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
850	chr17	34838546	34838547	rs726311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q12		rs726311-G	NR	1E-11		0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
850	chr17	34839662	34839662	rs35342470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q12		rs35342470-CG	NR	2E-14		0.0129	[0.0096-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
850	chr17	34839663	34839663	rs67796445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q12	ZNHIT3	rs67796445-CG	0.4712	4E-13		0.02592424	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
850	chr17	34842520	34842521	rs4796224	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q12	NR	rs4796224-G	0.4738	3E-8		0.0252	[0.016-0.034] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
850	chr17	34842520	34842521	rs4796224	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q12	ZNHIT3	rs4796224-G	NR	1E-15		1.0915838	NR	Affymetrix, Illumina [8278136] (imputed)	N
850	chr17	34848873	34848874	rs2306589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q12		rs2306589-?	NR	6E-32				NR [~ 8900000] (imputed)	N
850	chr17	34848873	34848874	rs2306589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q12	NA	rs2306589-T	0.473	3E-21		0.016	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
850	chr17	34848873	34848874	rs2306589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q12	NR	rs2306589-T	0.473	3E-21		0.016	[0.013-0.019] unit increase	NR [~ 27400000] (imputed)	N
850	chr17	34848873	34848874	rs2306589	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q12	ZNHIT3	rs2306589-C	NR	3E-11		0.0284982	[0.021-0.036] unit decrease	Affymetrix [16832071] (imputed)	N
850	chr17	34850622	34850623	rs7222903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	ZNHIT3	rs7222903-G	0.527724	1E-26		0.023750022	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
850	chr17	34854279	34854280	rs2306590	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	17q12	MYO19	rs2306590-G	0.6099	2E-18		0.0164	[0.013-0.02] unit increase	Illumina [246328]	N
850	chr17	34862219	34862220	rs1109442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1109442-T	0.525459	1E-30				Affymetrix, Illumina [22063850] (imputed)	N
850	chr17	34862219	34862220	rs1109442	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q12	NR	rs1109442-C	0.4629	6E-9		0.0218	[0.015-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
851	chr17	34866545	34866546	rs2306593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q12	NR	rs2306593-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
851	chr17	34866545	34866546	rs2306593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q12		rs2306593-?	NR	4E-17				NR [~ 8900000] (imputed)	N
851	chr17	34866545	34866546	rs2306593	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q12	NA	rs2306593-T	0.4897	2E-22		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
851	chr17	34866914	34866915	rs8070260	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q12	Intergenic	rs8070260-A	0.4727	1E-21	(MTAG)	0.0171	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
851	chr17	34866914	34866915	rs8070260	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q12	Intergenic	rs8070260-A	0.4727	2E-17		0.0166	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
851	chr17	34869154	34869155	rs8882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q12	NR	rs8882-G	0.530902	4E-33		0.022716	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
851	chr17	34869154	34869155	rs8882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	17q12	MYO19	rs8882-A	0.4638	6E-6		0.0291	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
851	chr17	34878287	34878288	rs184920307	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs184920307-G	NR	4E-30	(conditioned on rs113877493,rs76842834,rs142499028)	0.78	SD units decrease	NR [10700000] (imputed)	N
851	chr17	34882997	34882998	rs2411192	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q12	MYO19	rs2411192-A	0.596	5E-17		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
851	chr17	34882997	34882998	rs2411192	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q12	MYO19	rs2411192-A	0.5879	2E-13		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
851	chr17	34882997	34882998	rs2411192	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	17q12	MYO19	rs2411192-A	0.6	4E-9		1.0475	[1.0315-1.0639]	Affymetrix, Illumina [9585923] (imputed)	N
851	chr17	34883847	34883848	rs76842834	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs76842834-C	NR	1E-35	(conditioned on rs113877493)	0.568	SD units increase	NR [10700000] (imputed)	N
851	chr17	34892730	34892731	rs11650008	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	17q12	NR	rs11650008-C	0.533	5E-8		1.06524	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
851	chr17	34900119	34900120	rs12941866	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	17q12		rs12941866-?	NR	3E-8		0.0204	NR unit increase	NR [4502103] (imputed)	N
851	chr17	34900835	34900836	rs3736166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q12		rs3736166-?	NR	2E-8				NR [~ 8900000] (imputed)	N
851	chr17	34900835	34900836	rs3736166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q12	Intergenic	rs3736166-C	0.4797	2E-18	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
851	chr17	34900835	34900836	rs3736166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q12	Intergenic	rs3736166-G	0.5203	1E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
851	chr17	34904984	34904985	rs12601380	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q12	GGNBP2	rs12601380-A	0.587339	4E-8		0.00779822	[0.005-0.0106] unit increase	Affymetrix [12370749]	N
851	chr17	34904984	34904985	rs12601380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs12601380-A	0.5739	7E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
851	chr17	34904984	34904985	rs12601380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs12601380-A	0.5739	2E-12	(MTAG)	0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
851	chr17	34904984	34904985	rs12601380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q12	Intergenic	rs12601380-A	0.5864	2E-16	(MTAG)	0.0191	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
851	chr17	34905407	34905408	rs9906189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q12		rs9906189-?	NR	4E-9				NR [~ 8900000] (imputed)	N
851	chr17	34913527	34913528	rs35751000	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	17q12	NR	rs35751000-G	NR	9E-6		0.082	[0.047-0.117] unit increase	Illumina [6319684] (imputed)	N
851	chr17	34914364	34914365	rs28573110	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q12	NR	rs28573110-A	NR	3E-12		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
851	chr17	34914786	34914787	rs12150665	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q12	GGNBP2	rs12150665-C	0.4	5E-11		0.016	[0.012-0.02] unit decrease	Illumina [6108953] (imputed)	N
851	chr17	34914786	34914787	rs12150665	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q12	CCL3, CCL4, TBC1D3B, CCL3L3, CCL3L1, CCL4L2, CCL4L1, TBC1D3C, TBC1D3H, TBC1D3G, ZNHIT3, PIGW, MRM1, MYO19, DHRS11, LHX1, AATF, MIR2909	rs12150665-T	0.587285478363642	3E-13		0.019674147	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
851	chr17	34914786	34914787	rs12150665	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q12	GGNBP2	rs12150665-T	0.595	8E-8		0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
851	chr17	34914786	34914787	rs12150665	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q12	GGNBP2	rs12150665-T	0.589	2E-7	(EA)	0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
851	chr17	34915044	34915044	rs34349354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q12		rs34349354-CAG	NR	5E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
851	chr17	34933058	34933059	rs12951079	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q12		rs12951079-G	0.58	3E-9				NR [NR] (imputed)	N
851	chr17	34933058	34933059	rs12951079	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q12		rs12951079-G	0.58	1E-12		0.011	% increase	NR [NR] (imputed)	N
851	chr17	34933058	34933059	rs12951079	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q12	GGNBP2	rs12951079-G	0.581219	2E-14		0.0107877	[0.008-0.0135] unit increase	Affymetrix [12370749]	N
851	chr17	34942594	34942595	rs1106908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q12	NA	rs1106908-A	0.4454	8E-23		0.0161	[0.013-0.019] unit decrease	NR [~ 27400000] (imputed)	N
851	chr17	34943718	34943719	rs3744593	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	17q12		rs3744593-?	NR	9E-10				NR [7857346] (imputed)	N
851	chr17	34943718	34943719	rs3744593	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q12	GGNBP2	rs3744593-T	NR	4E-10		0.01841798	[0.013-0.024] unit increase	Affymetrix [NR]	N
851	chr17	34945213	34945214	rs17692864	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXL	5,358 Icelandic ancestry individuals	NA	17q12		rs17692864-C	0.05048	9E-46		0.611016	[0.53-0.7] unit decrease	Illumina [7506463] (imputed)	N
851	chr17	34945213	34945214	rs17692864	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs17692864-T	0.94	2E-18		0.2193	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
851	chr17	34950238	34950239	rs12937411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q12		rs12937411-T	NR	4E-20		0.0176	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
851	chr17	34950238	34950239	rs12937411	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	17q12	MYO19, DHRS11	rs12937411-C	0.6134	2E-10		6.394	NR z score decrease	Illumina [26237160] (imputed)	N
851	chr17	34951203	34951204	rs2285640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17q12		rs2285640-A	NR	3E-9		0.0287	[0.019-0.038] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
851	chr17	34951203	34951204	rs2285640	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q12	NR	rs2285640-A	NR	2E-10		6.335	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
851	chr17	34951203	34951204	rs2285640	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q12	NR	rs2285640-?	NR	9E-8		5.346	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
851	chr17	34952788	34952789	rs35258073	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q12	NR	rs35258073-T	0.445328	8E-11		0.041121475	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
851	chr17	34952788	34952789	rs35258073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q12	Intergenic	rs35258073-T	0.5525	6E-11		0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
851	chr17	34958597	34958598	rs78943308	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs78943308-G	NR	2E-81		0.4537	[0.41-0.5] SD units increase	NR [10700000] (imputed)	N
851	chr17	34959458	34959459	rs12936319	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q12	NA	rs12936319-A	0.6015	1E-22		0.0171	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
851	chr17	34984208	34984209	rs11263779	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs11263779-G	NR	5E-16	(conditioned on rs113877493,rs76842834,rs142499028,rs184920307)	0.174	SD units decrease	NR [10700000] (imputed)	N
851	chr17	34992442	34992443	rs211997	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	17q12		rs211997-G	0.04411	6E-16		0.372047	[0.28-0.46] unit decrease	Illumina [7506463] (imputed)	N
851	chr17	34992442	34992443	rs211997	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXL	5,358 Icelandic ancestry individuals	NA	17q12		rs211997-G	0.04411	4E-49		0.676679	[0.59-0.77] unit decrease	Illumina [7506463] (imputed)	N
851	chr17	34992442	34992443	rs211997	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs211997-A	0.96	7E-34		0.3428	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
852	chr17	34999184	34999185	rs211988	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q12	Intergenic	rs211988-T	0.4672	3E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
852	chr17	35000393	35000394	rs79943102	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	17q12		rs79943102-T	0.092	3E-23		0.1921	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
852	chr17	35015901	35015902	rs12950363	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	17q12	intergenic	rs12950363-T	0.0749	2E-6		0.9201	[0.54-1.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
852	chr17	35018281	35018282	rs9901582	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	17q12	NR	rs9901582-?	NR	7E-14		7.49	NR z score decrease	Illumina [at least 830937] (imputed)	N
852	chr17	35054783	35054784	rs7213767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q12		rs7213767-?	NR	4E-8				NR [~ 8900000] (imputed)	N
852	chr17	35057372	35057373	rs6607337	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q12	NA	rs6607337-T	0.2978	3E-11		0.0124	[0.0087-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
852	chr17	35072497	35072498	rs35704505	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	17q12	LOC105371750	rs35704505-?	NR	8E-6		0.39	[NR] unit decrease	Illumina [1365181]	N
853	chr17	35140078	35140079	rs143653036	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs143653036-G	NR	1E-25		0.6966	[0.57-0.83] SD units decrease	NR [10700000] (imputed)	N
853	chr17	35145661	35145662	rs8067970	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	17q12	MRM1, LHX1	rs8067970-G	NR	4E-6		4.638	NR z score increase	Illumina [7839440] (imputed)	N
853	chr17	35161747	35161748	rs295849	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	17q12	LHX1	rs295849-T	0.38	7E-7				Affymetrix, Illumina [at least 2500000] (imputed)	N
853	chr17	35161747	35161748	rs295849	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (1df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	17q12	LHX1	rs295849-T	0.38	3E-8		0.009	[0.0051-0.0129] unit increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
853	chr17	35176538	35176539	rs1497197	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	17q12	LHX1	rs1497197-?	NR	3E-6		1.4972146		Affymetrix, Illumina [2928658] (imputed)	N
853	chr17	35181995	35181996	rs4796285	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	17q12	intergenic	rs47996285-A	0.581	7E-6	(Hispanic, males)	0.092	[0.053-0.131] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
853	chr17	35189090	35189091	rs17138064	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	17q12	intergenic	rs17138064-?	0.84	5E-7	(CP)	1.92	[1.47-2.5]	Illumina [NR]	N
853	chr17	35216125	35216126	rs884207	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs884207-?	NR	2E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35222994	35222995	rs9895448	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs9895448-?	NR	2E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35243499	35243500	rs11652230	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs11652230-?	NR	4E-8	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
853	chr17	35243711	35243712	rs13380817	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	17q12		rs13380817-G	0.47	2E-6		0.9	[0.86-0.94] unit decrease	Illumina [5305352] (imputed)	N
853	chr17	35244999	35245000	rs1874581	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs1874581-?	NR	6E-14	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35246649	35246650	rs72824427	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs72824427-?	NR	7E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35252275	35252276	rs68093876	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs68093876-?	NR	3E-12	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35255097	35255098	rs11263814	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs11263814-?	NR	9E-17	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
853	chr17	35257231	35257232	rs78777685	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs78777685-?	NR	2E-25	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
854	chr17	35259092	35259093	rs8064679	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs8064679-?	NR	1E-9	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
854	chr17	35260545	35260546	rs9910727	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs9910727-C	NR	5E-12		0.6257	[0.45-0.8] SD units decrease	NR [10700000] (imputed)	N
854	chr17	35261072	35261073	rs9905515	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs9905515-?	NR	1E-17	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
854	chr17	35262276	35262277	rs8070356	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs8070356-?	NR	5E-13	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
854	chr17	35263955	35263956	rs7218928	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q12	NR	rs7218928-?	NR	1E-13	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
854	chr17	35270921	35270922	rs55955238	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q12	Intergenic	rs55955238-T	0.441	3E-6		0.01	unit increase	Illumina [NR] (imputed)	N
854	chr17	35273344	35273345	rs2003347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q12	Intergenic	rs2003347-T	0.559	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
854	chr17	35274281	35274282	rs12185265	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q12	Intergenic	rs12185265-C	0.556	3E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
854	chr17	35306311	35306312	rs2306658	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	AATF	rs2306658-G	0.249	9E-6	(Hip circumference )	0.02	[NR] cm increase	Illumina [899892]	N
854	chr17	35306311	35306312	rs2306658	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	AATF	rs2306658-G	0.249	2E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
854	chr17	35332739	35332740	rs7212416	32019955	Brcic L	2020-02-04	Sci Rep	AATF and SMARCA2 are associated with thyroid volume in Hashimoto's thyroiditis patients.	Thyroid volume in Hashimoto's thyroiditis	345 European ancestry individuals	NA	17q12	AATF	rs7212416-T	0.84	9E-9		0.589	[0.39-0.79] unit decrease	Illumina [6007542] (imputed)	N
854	chr17	35384424	35384425	rs186218230	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs186218230-G	NR	3E-9		0.2824	[0.19-0.38] SD units increase	NR [10700000] (imputed)	N
855	chr17	35427956	35427957	rs9747659	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	17q12	AATF	rs9747659-?	NR	5E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
855	chr17	35444763	35444764	rs9330248	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	17q12		rs9330248-A	0.15	4E-7		0.09	unit decrease	Illumina [2093892] (imputed)	N
855	chr17	35444763	35444764	rs9330248	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	17q12		rs9330248-A	0.15	5E-8		0.11	unit decrease	Illumina [2398641] (imputed)	N
855	chr17	35516024	35516025	rs182210624	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs182210624-G	NR	2E-7		0.2695	[0.17-0.37] SD units increase	NR [10700000] (imputed)	N
856	chr17	35595367	35595368	rs12451365	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	17q12	ACACA	rs12451365-C		5E-22		0.0106	[0.0084-0.0128] unit increase	Affymetrix [13304133] (imputed)	N
856	chr17	35608663	35608664	rs9906044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q12		rs9906044-?	NR	2E-8				NR [~ 8900000] (imputed)	N
856	chr17	35631251	35631252	rs76298822	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	17q12		rs76298822-?	NR	4E-6		0.4981422	[0.29-0.71] unit increase	Illumina [9901720] (imputed)	N
857	chr17	35686875	35686876	rs145588693	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	17q12	NR	rs145588693-A	0.076	3E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
857	chr17	35722346	35722347	rs185128671	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs185128671-G	NR	2E-9		0.6071	[0.42-0.8] SD units increase	NR [10700000] (imputed)	N
857	chr17	35731080	35731081	rs8081319	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	17q12	HOXB9	rs8081319-?	NR	8E-7		1.36	[1.20-1.54]	Illumina [517345]	N
857	chr17	35759964	35759965	rs1112174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1112174-T	0.355039	7E-24				Affymetrix, Illumina [23472807] (imputed)	N
857	chr17	35759964	35759965	rs1112174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1112174-T	0.354548	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
857	chr17	35766563	35766564	rs140611363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA			rs140611363-C	NR	6E-18		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
858	chr17	35808557	35808558	rs2158239	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	17q12	TADA2A	rs2158239-?		2E-10				Affymetrix, Illumina [2374420] (imputed)	N
858	chr17	35808557	35808558	rs2158239	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q12	NR	rs2158239-T	NR	7E-11		0.14	[0.1-0.18] unit increase	Affymetrix, Illumina [NR] (imputed)	N
858	chr17	35808557	35808558	rs2158239	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q12	NR	rs2158239-T	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
858	chr17	35833207	35833208	rs6607275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q12		rs6607275-C	NR	5E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
858	chr17	35833207	35833208	rs6607275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q12	TADA2A	rs6607275-C	0.638418	1E-9		0.013998402	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35840772	35840772	rs773734568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q12		rs773734568-TAAA	NR	6E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
858	chr17	35840772	35840772	rs773734568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q12		rs773734568-TAAA	NR	3E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
858	chr17	35840772	35840772	rs773734568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q12	TADA2A	rs773734568-TAAA	0.647995	3E-15		0.018331036	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35843049	35843050	rs853234	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q12		rs853234-C	0.362	7E-9				Affymetrix [10369434] (imputed)	N
858	chr17	35843049	35843050	rs853234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q12	TADA2A	rs853234-T	0.638798	1E-20		0.021792497	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35845579	35845580	rs7213617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs7213617-G	0.710304	3E-24				Affymetrix, Illumina [24588908] (imputed)	N
858	chr17	35845579	35845580	rs7213617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q12	NR	rs7213617-G	0.639276	1E-24		0.020521	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
858	chr17	35846453	35846453	rs774485168	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	DUSP14	rs774485168-TTC	0.636342	1E-17		0.020057045	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35848254	35848255	rs853195	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q12	DUSP14	rs853195-A	0.6378	1E-11		0.02566215	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr17	35848254	35848255	rs853195	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q12	DUSP14	rs853195-A	0.6378	2E-10		0.02397687	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr17	35848277	35848277	rs145260320	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs145260320-C	NR	1E-7		0.2317	[0.14-0.32] SD units decrease	NR [10700000] (imputed)	N
858	chr17	35849341	35849342	rs853198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs853198-C	0.705839	2E-19				Affymetrix, Illumina [24649327] (imputed)	N
858	chr17	35849341	35849342	rs853198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q12	NR	rs853198-C	0.639646	4E-25		0.020396	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
858	chr17	35850041	35850046	rs373703160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q12	DUSP14	rs373703160-C	0.642933	2E-10		0.014711148	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35850041	35850046	rs373703160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q12	DUSP14	rs373703160-CCCGCG	0.357036	8E-30		0.026227215	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35850224	35850225	rs853199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs853199-C	0.687967	8E-38				Affymetrix, Illumina [23467995] (imputed)	N
858	chr17	35850224	35850225	rs853199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q12		rs853199-?	NR	1E-12				NR [~ 8900000] (imputed)	N
858	chr17	35850552	35850553	rs712039	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	17q12	NR	rs712039-?	0.49	3E-6		1.21	[1.10-1.30]	Affymetrix [> 333754] (imputed)	N
858	chr17	35851176	35851177	rs865483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q12		rs865483-C	NR	2E-19		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
858	chr17	35851176	35851177	rs865483	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q12		rs865483-A	0.358	1E-10				Affymetrix [10369434] (imputed)	N
858	chr17	35851176	35851177	rs865483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q12	DUSP14	rs865483-C	0.642474	1E-9		0.01394498	[0.0094-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35851176	35851177	rs865483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q12	DUSP14	rs865483-C	0.64247	5E-11		0.015177436	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35851176	35851177	rs865483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q12	NR	rs865483-C	0.643294	1E-18		0.016903	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
858	chr17	35851176	35851177	rs865483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q12	NR	rs865483-C	0.6433	2E-11		0.012937	[0.0092-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
858	chr17	35851176	35851177	rs865483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q12	NR	rs865483-C	0.64291	9E-40		0.025796	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
858	chr17	35851176	35851177	rs865483	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q12	DUSP14	rs865483-C	0.6416	5E-10		0.02312815	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
858	chr17	35856592	35856593	rs11870754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q12		rs11870754-G	NR	1E-8		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
858	chr17	35874191	35874192	rs1016678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q12	Intergenic	rs1016678-A	0.3607	2E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
858	chr17	35874191	35874192	rs1016678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs1016678-A	0.3635	4E-8	(MTAG)	0.0075	[0.0048-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
858	chr17	35874384	35874385	rs1016680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs1016680-?	NR	6E-11				NR [~ 8900000] (imputed)	N
858	chr17	35875511	35875511	rs10648808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q12	SYNRG	rs10648808-CAA	0.640255	1E-20		0.021572338	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr17	35889530	35889531	rs763512	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q12	NR	rs763512-?	NR	6E-6	(AA)	0.3996	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
858	chr17	35891383	35891384	rs3110628	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q12	Intergenic	rs3110628-C	0.4076	2E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
858	chr17	35898341	35898342	rs2074409	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	17q12	SYNRG	rs2074409-T	NR	2E-6	(EA)	1.2	[0.67-1.73] unit increase	Affymetrix [~ 2300000] (imputed)	N
859	chr17	35918853	35918854	rs17576688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q12	Intergenic	rs17576688-T	0.5454	1E-9	(MTAG)	0.0139	[0.0094-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
859	chr17	35984780	35984781	rs149326635	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs149326635-C	NR	3E-6		0.2697	[0.16-0.38] SD units decrease	NR [10700000] (imputed)	N
859	chr17	36026334	36026335	rs6607284	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	17q12	NR	rs6607284-?	NR	7E-6		1.2262	[NR]	Affymetrix [722112]	N
859	chr17	36041418	36041419	rs2107135	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q12	NR	rs2107135-T	0.775195	2E-8		0.014422	[0.0094-0.0194] unit decrease	NR [NR]	N
860	chr17	36046450	36046451	rs10962	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q12	HNF1B	rs10962-C	0.2257	1E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
860	chr17	36047416	36047417	rs3110641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q12		rs3110641-G	NR	1E-46		0.0319	[0.028-0.036] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
860	chr17	36047416	36047417	rs3110641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	17q12		rs3110641-G	0.697048	1E-15		0.0293112	[0.022-0.036] unit decrease	Illumina [13478792] (imputed)	N
860	chr17	36047416	36047417	rs3110641	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q12	NR	rs3110641-A	NR	8E-14		1.056	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
860	chr17	36047416	36047417	rs3110641	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q12	HNF1B	rs3110641-A	0.2658	1E-24		0.0085	[0.0069-0.0101] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
860	chr17	36047416	36047417	rs3110641	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	17q12	HNF1B	rs3110641-?	NR	1E-12		0.0273	[0.02-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
860	chr17	36049551	36049552	rs35551980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q12	NR	rs35551980-C	NR	2E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr17	36059376	36059377	rs2269841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q12	NR	rs2269841-G	NR	1E-18		0.0233	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36059376	36059377	rs2269841	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q12	NR	rs2269841-A	0.718518	2E-19		0.0210525	[0.016-0.026] unit decrease	NR [NR]	N
860	chr17	36063684	36063685	rs2189301	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q12	HNF1B	rs2189301-G	0.8716	7E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q12		rs17138478-A	NR	5E-10		0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	17q12		rs17138478-A	NR	1E-11		0.076	[0.054-0.098] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q12		rs17138478-A	NR	2E-25		0.0318	[0.026-0.038] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q12		rs17138478-A	NR	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q12		rs17138478-A	NR	2E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	17q12	HNF1B	rs17138478-?	NR	1E-8		0.0021	[0.0013-0.0029] unit decrease	Affymetrix [21347608] (imputed)	N
860	chr17	36073319	36073320	rs17138478	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	17q12	HNF1B	rs17138478-?	NR	2E-22		0.0062	[0.0048-0.0076] unit decrease	Affymetrix [21347608] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q12	HNF1B	rs17138478-C	0.87	6E-9		5.83	z-score increase	Affymetrix [4314223] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q12	HNF1B	rs17138478-C	0.87	2E-15		7.95	z-score increase	Affymetrix [4312306] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q12	NR	rs17138478-A	NR	9E-11		0.0241	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q12	NR	rs17138478-A	NR	2E-12		0.0251	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q12	NR	rs17138478-A	NR	3E-20		0.0329	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	17q12	NR	rs17138478-A	NR	4E-15		0.028	[0.021-0.035] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	17q12	NR	rs17138478-A	NR	5E-18		0.0308	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q12	HNF1B	rs17138478-?		1E-8		0.0337	[0.022-0.045] unit decrease	Illumina [31500000] (imputed)	N
860	chr17	36073319	36073320	rs17138478	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q12	NR	rs17138478-A	0.12882400000000005	3E-14		0.00891056	[0.0066-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
860	chr17	36073319	36073320	rs17138478	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q12	NR	rs17138478-A	0.12882400000000005	8E-9		0.00801676	[0.0054-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
860	chr17	36073319	36073320	rs17138478	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	17q12	HNF1B	rs17138478-?		5E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [43000000] (imputed)	N
860	chr17	36073491	36073492	rs3110643	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA	17q12	HNF1B	rs3110643-C	0.16	4E-6		1.65	[1.43-1.87]	Illumina [2292247] (imputed)	N
860	chr17	36074978	36074979	rs11649743	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17q12	NR	rs11649743-G	0.813803076	9E-8		1.1311437	[1.08-1.18]	Affymetrix, Illumina [20400945] (imputed)	N
860	chr17	36074978	36074979	rs11649743	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q12	NR	rs11649743-G	NR	9E-35		1.108	[1.09-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
860	chr17	36074978	36074979	rs11649743	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	17q12	NR	rs11649743-G	0.693	9E-13		1.15	[1.11-1.20]	Affymetrix, Illumina [10186136] (imputed)	N
860	chr17	36074978	36074979	rs11649743	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	17q12		rs11649743-A	NR	2E-7		0.88905525	[0.850550035305689-0.929303586776981]	Illumina [8919992] (imputed)	N
860	chr17	36074978	36074979	rs11649743	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	17q12	HNF1B	rs11649743-G	0.703	6E-7		1.147	NR	Illumina [7742602] (imputed)	N
860	chr17	36074978	36074979	rs11649743	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q12	NR	rs11649743-G	0.81	6E-7		1.14	[1.08-1.20]	Affymetrix [up to 19977088] (imputed)	N
860	chr17	36074978	36074979	rs11649743	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q12	NR	rs11649743-G	0.81	1E-6	(European)	1.15	[1.09-1.22]	Affymetrix [up to 19977088] (imputed)	N
860	chr17	36075604	36075605	rs17138476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q12		rs17138476-T	NR	2E-8		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
860	chr17	36075604	36075605	rs17138476	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q12		rs17138476-T	NR	7E-9		1.1235955	[1.08-1.17]	Affymetrix [7846216] (imputed)	N
860	chr17	36075604	36075605	rs17138476	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q12	NR	rs17138476-C	0.837645	4E-15		0.0208741	[0.016-0.026] unit decrease	NR [NR]	N
860	chr17	36077098	36077099	rs718961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q12	NR	rs718961-A	NR	1E-34		0.0357	[0.03-0.041] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36077862	36077863	rs12951345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	17q12		rs12951345-C	0.308142	4E-8		0.0208361	[0.013-0.028] unit increase	Illumina [13476165] (imputed)	N
860	chr17	36077862	36077863	rs12951345	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	17q12	HNF1B	rs12951345-A	NR	1E-6		1.1363636	[1.08-1.19]	NR [NR]	N
860	chr17	36078509	36078510	rs4795218	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	17q12	HNF1B	rs4795218-G	0.783251	5E-47		0.00886959	[0.0076-0.0101] unit decrease	Affymetrix [13995440] (imputed)	N
860	chr17	36078509	36078510	rs4795218	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	17q12	HNF1B	rs4795218-G	0.77	1E-8		1.1363636	[1.09-1.19]	Illumina [11381182] (imputed)	N
860	chr17	36079564	36079565	rs62073542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q12		rs62073542-A	NR	7E-41		0.0307	[0.026-0.035] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
860	chr17	36079564	36079565	rs62073542	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q12		rs62073542-G	NR	5E-11		1.155	[1.107-1.206]	Affymetrix [7846216] (imputed)	N
860	chr17	36093021	36093022	rs7405776	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs7405776-G	0.41189	2E-10		1.1048253	[1.07145224223974-1.13923779281726]	Illumina [11595112] (imputed)	N
860	chr17	36093021	36093022	rs7405776	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian clear cell cancer	1,366 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs7405776-A	0.58811	2E-7		1.25	[1.15-1.35]	Illumina [11595112] (imputed)	N
860	chr17	36093021	36093022	rs7405776	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs7405776-G	0.41189	1E-6		1.1517414	[1.0876255656695-1.21963673962283]	Illumina [11595112] (imputed)	N
860	chr17	36093021	36093022	rs7405776	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs7405776-G	0.41189	3E-9		1.1008928	[1.06665802122163-1.1362263861189]	Illumina [11595112] (imputed)	N
860	chr17	36093021	36093022	rs7405776	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	17q12	NR	rs7405776-G	0.41189	2E-10		1.09	[1.06-1.12]	Illumina [11595112] (imputed)	N
860	chr17	36096299	36096300	rs2005705	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	17q12	TCF2	rs2005705-G	0.56	1E-6		1.35	[1.23-1.47]	Illumina [2639562] (imputed)	N
860	chr17	36096514	36096515	rs757210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q12	NR	rs757210-C	NR	3E-9		0.0157	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
860	chr17	36096514	36096515	rs757210	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	17q12	HNF1B	rs757210-A	0.63	2E-8		1.11	[1.07-1.15]	Illumina [up to 10962898] (imputed)	N
860	chr17	36096514	36096515	rs757210	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	17q12	HNF1B, ACACA, C17orf78, TADA2A, DUSP14, SYNRG, DDX52, TBC1D3F, TBC1D3, MRPL45, GPR179, SOCS7, ARHGAP23	rs757210-G	0.37	8E-10	(Serious invasive)	1.12	[1.08-1.17]	Illumina [2508744] (imputed)	N
860	chr17	36097774	36097775	rs11263761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	17q12		rs11263761-A	0.619386	3E-9		0.0215992	[0.014-0.029] unit decrease	Illumina [13476509] (imputed)	N
860	chr17	36097774	36097775	rs11263761	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	17q12	HNF1B	rs11263761-A	0.51711	3E-14		1.15	[1.11-1.19]	Affymetrix, Illumina [~ 11700000] (imputed)	N
860	chr17	36097774	36097775	rs11263761	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	17q12	HNF1B	rs11263761-A	0.52	3E-20		1.15	[1.12-1.19]	Affymetrix, Illumina [~ 11700000] (imputed)	N
860	chr17	36097774	36097775	rs11263761	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	17q12	HNF1B	rs11263761-A	0.51	6E-20		0.0515111	[0.04-0.063] unit increase	Affymetrix [10109774] (imputed)	N
860	chr17	36098039	36098040	rs4430796	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17q12		rs4430796-?	NR	8E-26		0.830791	[0.8-0.87]	NR [680312]	N
860	chr17	36098039	36098040	rs4430796	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	17q12	HNF1B	rs4430796-A	0.648	5E-27		1.365	NR	Illumina [7742602] (imputed)	N
860	chr17	36098039	36098040	rs4430796	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q12	NR	rs4430796-A	0.53	1E-132		1.22	[1.20-1.24]	Illumina [20370935] (imputed)	N
860	chr17	36098039	36098040	rs4430796	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	17q12	HNF1B	rs4430796-A	0.5249	3E-15		0.083	[0.061-0.105] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
860	chr17	36098039	36098040	rs4430796	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	17q12	HNF1B	rs4430796-A	NR	6E-8		1.2345679	[NR]	Illumina [4550396] (imputed)	N
860	chr17	36098039	36098040	rs4430796	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	17q12	HNF1B	rs4430796-G	0.53	9E-10		1.13	[1.07-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
860	chr17	36098039	36098040	rs4430796	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	17q12	HNF1B	rs4430796-G	0.37	4E-6		1.11	[1.06-1.16]	Illumina [6209637] (imputed)	N
860	chr17	36098039	36098040	rs4430796	22961080	Li H	2012-09-06	Diabetes	A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans.	Type 2 diabetes	1,839 Han Chinese ancestry cases, 1,873 Han Chinese ancestry controls	15,979 East Asian ancestry cases, 19,360 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	17q12	HNF1B	rs4430796-G	0.276	2E-11		1.19	[1.13-1.25]	Illumina [2234194] (imputed)	N
860	chr17	36098039	36098040	rs4430796	21499250	Spurdle AB	2011-04-17	Nat Genet	Genome-wide association study identifies a common variant associated with risk of endometrial cancer.	Endometrial cancer	1,265 European ancestry cases, 5,190 European ancestry controls	3,957 European ancestry cases, 6,886 European ancestry controls	17q12	HNF1B	rs4430796-A	0.52	7E-10		1.19	[1.12-1.27]	Illumina [519655]	N
860	chr17	36098039	36098040	rs4430796	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	17q12	HNF1B	rs4430796-A	0.52	6E-11		9.4	[NR] % increase	Illumina [304070]	N
860	chr17	36098039	36098040	rs4430796	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	17q12	HNF1B, TCF2	rs4430796-G		2E-6		1.14	[1.08-1.20]	Affymetrix, Illumina [2426886] (imputed)	N
860	chr17	36098039	36098040	rs4430796	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	17q12	intergenic	rs4430796-A	0.52	8E-6		1.19	[1.10-1.28]	Illumina [310520]	N
860	chr17	36098039	36098040	rs4430796	18264096	Thomas G	2008-02-10	Nat Genet	Multiple loci identified in a genome-wide association study of prostate cancer.	Prostate cancer	1,172 European ancestry cases, 1,157 European ancestry controls	3,941 European ancestry cases, 3,964 European ancestry controls	17q12	HNF1B	rs4430796-A	0.54	1E-9		1.18	[1.04-1.32]	Illumina [527869]	N
860	chr17	36098039	36098040	rs4430796	17603485	Gudmundsson J	2007-07-01	Nat Genet	Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.	Prostate cancer	1,501 European ancestry cases, 11,290 European ancestry controls	1,992 European ancestry cases, 3,058 European ancestry controls	17q12	TCF2	rs4430796-A	0.49	1E-11		1.22	[1.15-1.30]	Illumina [310520]	N
860	chr17	36099839	36099840	rs11651755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17q12		rs11651755-T	NR	8E-17		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
860	chr17	36099839	36099840	rs11651755	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q12	NR	rs11651755-C	0.4671	9E-67		0.0663	[0.059-0.074] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
860	chr17	36099839	36099840	rs11651755	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q12	HNF1B	rs11651755-C	0.484669254001265	9E-22		0.0741	[0.059-0.089] unit increase	NR [5035015] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-C	0.486465	1E-8		1.0903314	[1.05822261240111-1.12341446823123]	Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-C	0.486465	5E-6		1.1726217	[1.09521694178849-1.25549703248424]	Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian clear cell cancer	1,366 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-T	0.513535	7E-9		1.27	[1.16-1.37]	Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-T	0.513535	2E-6		1.1539987		Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-C	0.486465	6E-6		1.1389422	[1.07652961941979-1.20497334696891]	Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	17q12	NR	rs11651755-C	0.486465	2E-8		1.0924964	[1.05939221330271-1.12663514204283]	Illumina [11595112] (imputed)	N
860	chr17	36099839	36099840	rs11651755	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	17q12	NR	rs11651755-C	0.48646500000000004	8E-9		1.077992	[1.05087168925156-1.10581210313382]	Illumina [11595112] (imputed)	N
860	chr17	36099951	36099952	rs10908278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q12		rs10908278-A	NR	6E-21		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
860	chr17	36099951	36099952	rs10908278	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	17q12		rs10908278-A	0.695586179	2E-38		0.8866894	[0.870709604-0.902962461]	Illumina [8919992] (imputed)	N
860	chr17	36099951	36099952	rs10908278	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q12	HNF1B	rs10908278-T	0.4808	6E-36		1.08	[1.07-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
860	chr17	36099951	36099952	rs10908278	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	17q12	HNF1B, TCF2	rs10908278-T	NR	4E-15	(Japanese)	1.139592	[1.10309893584046-1.17729192248239]	Illumina [7521072] (imputed)	N
860	chr17	36100766	36100767	rs11657964	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q12	NR	rs11657964-G	0.5957	1E-36		0.0589	[0.05-0.068] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
860	chr17	36101155	36101156	rs7501939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17q12		rs7501939-C	NR	2E-37		0.1002	[0.085-0.115] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
860	chr17	36101155	36101156	rs7501939	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	17q12	NR	rs7501939-C	NR	9E-41		1.22	NR	Affymetrix [at least 232408] (imputed)	N
860	chr17	36101155	36101156	rs7501939	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	17q12	HNF1B	rs7501939-T	0.397921	1E-11		0.080408394	[0.057-0.104] unit increase	Affymetrix [7288503] (imputed)	N
860	chr17	36101155	36101156	rs7501939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	17q12		rs7501939-?	NR	2E-17				NR [~ 8900000] (imputed)	N
860	chr17	36101155	36101156	rs7501939	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	17q12	HNF1B	rs7501939-T	0.38	1E-14		1.26	1.19-1.34	Illumina [9210350] (imputed)	N
860	chr17	36101155	36101156	rs7501939	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	17q12	HNF1B	rs7501939-T	0.61	3E-20		1.25	[1.21-1.30]	Illumina [at least 371504] (imputed)	N
860	chr17	36101155	36101156	rs7501939	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q12	NR	rs7501939-C	0.6	4E-15		1.17	[1.13-1.22]	Affymetrix [up to 19977088] (imputed)	N
860	chr17	36101155	36101156	rs7501939	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q12	NR	rs7501939-C	0.6	1E-14	(European)	1.19	[1.14-1.24]	Affymetrix [up to 19977088] (imputed)	N
860	chr17	36101155	36101156	rs7501939	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	17q12	HNF1B	rs7501939-C	0.624	1E-9		1.28	[1.19-1.39]	Illumina [610240]	N
860	chr17	36101155	36101156	rs7501939	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	17q12	TCF2	rs7501939-C	NR	2E-6		1.19	[1.11-1.28]	Illumina [571243]	N
860	chr17	36101155	36101156	rs7501939	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	17q12	HNF1B	rs7501939-?	NR	1E-12				Illumina [510687]	N
860	chr17	36101155	36101156	rs7501939	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	17q12	NR	rs7501939-?	NR	3E-18				Illumina [541129]	N
860	chr17	36101155	36101156	rs7501939	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	17q12	HNF1B	rs7501939-C	0.57	9E-12		1.41	[NR]	Illumina [541129]	N
860	chr17	36101585	36101586	rs8064454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q12		rs8064454-C	0.670181649	7E-48		0.32847837	[0.28-0.37] unit increase	Illumina [13406905] (imputed)	N
860	chr17	36101585	36101586	rs8064454	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	17q12	NR	rs8064454-C	0.6742	5E-35		0.1152	[0.097-0.133] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
860	chr17	36101585	36101586	rs8064454	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	17q12		rs8064454-C	0.670071446	2E-45		1.3735855	[1.314517211-1.435307952]	Illumina [8919992] (imputed)	N
860	chr17	36101585	36101586	rs8064454	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	17q12	HNF1B, TCF2	rs8064454-A	0.305	6E-61		1.13	[1.11-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
860	chr17	36101585	36101586	rs8064454	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	17q12	HNF1B	rs8064454-C	0.52	8E-29		1.24	[1.19-1.29]	Illumina [1531807] (imputed)	N
860	chr17	36101632	36101633	rs12601991	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	17q12	HNF1B	rs12601991-T	NR	7E-28	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
860	chr17	36101632	36101633	rs12601991	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	17q12	HNF1B	rs12601991-T	NR	1E-9		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
860	chr17	36102380	36102381	rs11651052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q12		rs11651052-G	0.681949771	1E-35		0.12324289	[0.1-0.14] unit decrease	Illumina [13429769] (imputed)	N
860	chr17	36102380	36102381	rs11651052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q12		rs11651052-G	NR	5E-44		0.091	[0.078-0.104] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
860	chr17	36102380	36102381	rs11651052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q12		rs11651052-G	NR	5E-79		0.2307	[0.21-0.25] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
860	chr17	36102380	36102381	rs11651052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17q12		rs11651052-G	0.675477481	1E-28		0.11767712	[0.097-0.138] unit decrease	Illumina [13134967] (imputed)	N
860	chr17	36102380	36102381	rs11651052	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	17q12	HNF1B, TCF2	rs11651052-A	0.32	2E-34		1.12	1.10-1.14	Illumina [12557761] (imputed)	N
860	chr17	36102380	36102381	rs11651052	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	17q12	HNF1B	rs11651052-A	0.47	2E-24		0.058	unit decrease	Affymetrix, Illumina [up to 32463442] (imputed)	N
860	chr17	36102380	36102381	rs11651052	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate cancer	11,708 European ancestry cases, 284,184 European ancestry controls	NA	17q12	HNF1B	rs11651052-G	0.53	2E-40		1.22	[1.19-1.27]	Affymetrix, Illumina [42907111] (imputed)	N
860	chr17	36102380	36102381	rs11651052	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	17q12		rs11651052-G	0.53	8E-6		1.0526316	[1.03-1.08]	Affymetrix, Illumina [42907111] (imputed)	N
860	chr17	36102380	36102381	rs11651052	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	17q12	HNF1B	rs11651052-G	0.47	3E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [42907111] (imputed)	N
860	chr17	36102380	36102381	rs11651052	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q12	NR	rs11651052-G	0.73	1E-7	(Japanese, Male)	0.027	[0.017-0.037] unit increase	Illumina [6108953] (imputed)	N
860	chr17	36102380	36102381	rs11651052	27262462	Teerlink CC	2016-06-04	Hum Genet	Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.	Prostate cancer	2,511 European ancestry cases, 1,382 European ancestry controls	NA	17q12	HNF1B	rs11651052-A	0.435	3E-10		1.37	[1.24-1.51]	Illumina [~ 9400000] (imputed)	N
860	chr17	36102380	36102381	rs11651052	27008869	Chen MM	2016-03-23	Hum Mol Genet	GWAS meta-analysis of 16 852 women identifies new susceptibility locus for endometrial cancer.	Endometrial cancer	4,907 European ancestry cases, 11,945 European ancestry controls	NA	17q12	HNF1B	rs11651052-?	0.535	1E-8		1.16	[NR]	Illumina [9486271] (imputed)	N
860	chr17	36102380	36102381	rs11651052	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	17q12	HNF1B	rs11651052-A	NR	7E-6	(men)	1.09	[1.05-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
860	chr17	36102380	36102381	rs11651052	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	17q12	HNF1B	rs11651052-A	NR	3E-9	(female)	1.13	[1.09-1.18]	Affymetrix, Illumina [up to 2500000] (imputed)	N
860	chr17	36102380	36102381	rs11651052	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	17q12	HNF1B	rs11651052-A	0.444815275802543	2E-11		1.1	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
860	chr17	36103564	36103565	rs11263763	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17q12	NR	rs11263763-A	0.522688339	5E-33		1.2302762	[1.19-1.27]	Affymetrix, Illumina [20400945] (imputed)	N
860	chr17	36103564	36103565	rs11263763	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q12	NR	rs11263763-A	NR	1E-183		1.214	[1.20-1.23]	Affymetrix, Illumina [29235255] (imputed)	N
860	chr17	36103564	36103565	rs11263763	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	17q12	NR	rs11263763-A	0.713	1E-38		1.31	[1.26-1.36]	Affymetrix, Illumina [10186136] (imputed)	N
860	chr17	36103564	36103565	rs11263763	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	17q12	NR	rs11263763-A	0.612	2E-6		1.109	[1.06-1.16]	Affymetrix, Illumina [18877980] (imputed)	N
860	chr17	36103564	36103565	rs11263763	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	17q12		rs11263763-A	NR	5E-47		1.2359413	NR	Affymetrix [7846216] (imputed)	N
860	chr17	36103564	36103565	rs11263763	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q12		rs11263763-A	NR	4E-47		1.216545	[1.18-1.25]	Affymetrix [7846216] (imputed)	N
860	chr17	36103564	36103565	rs11263763	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial endometrioid carcinoma	2,082 European ancestry cases, 9,544 European ancestry controls	4,553 European ancestry cases, 27,600 European ancestry controls	17q12	HNF1B	rs11263763-A	0.54	7E-17		1.2	[1.15-1.25]	Illumina [up to 2300000] (imputed)	N
860	chr17	36103564	36103565	rs11263763	27135401	Cheng TH	2016-05-02	Nat Genet	Five endometrial cancer risk loci identified through genome-wide association analysis.	Endometrial cancer	2,082 European ancestry endometrioid cases, 130 European ancestry cases,  9,544 European ancestry controls	4,553 European ancestry endometrioid cases, 972 European ancestry cases, 27,600 European ancestry controls	17q12	HNF1B	rs11263763-A	0.54	3E-19		1.2	[1.15-1.25]	Illumina [up to 2300000] (imputed)	N
860	chr17	36103564	36103565	rs11263763	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q12	NR	rs11263763-A	0.519	5E-24		1.22	[1.18-1.28]	Affymetrix [up to 19977088] (imputed)	N
860	chr17	36103871	36103872	rs11658063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q12		rs11658063-G	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
860	chr17	36103871	36103872	rs11658063	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q12	HNF1B	rs11658063-C	0.62	6E-9	(Male)	0.024	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
860	chr17	36104120	36104121	rs12453443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q12		rs12453443-G	NR	4E-9		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
860	chr17	36106312	36106313	rs3760511	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	17q12	HNF1B	rs3760511-C	0.43	7E-9		1.26	[1.16-1.36] unit increase	Illumina [185478]	N
860	chr17	36151145	36151146	rs34080163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q12	NR	rs34080163-A	NR	5E-11		0.0236	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
860	chr17	36172154	36172155	rs1533495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q12		rs1533495-T	0.719963	6E-10		0.015412486	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
860	chr17	36172154	36172155	rs1533495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q12		rs1533495-T	0.719984	1E-9		0.015170732	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
860	chr17	36173594	36173595	rs3942352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q12	NR	rs3942352-T	0.705609	8E-11		0.013225	[0.0092-0.0172] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
861	chr17	36189671	36189672	rs34322877	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	17q12		rs34322877-G	0.0315505	4E-10		0.0649994	[0.045-0.085] unit increase	Illumina [7980478] (imputed)	N
861	chr17	36189671	36189672	rs34322877	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	17q12		rs34322877-G	0.0315505	6E-11		0.0836712	[0.059-0.109] unit increase	Illumina [7980478] (imputed)	N
861	chr17	36191132	36191133	rs7221878	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs7221878-C	NR	7E-11		0.3045	[0.21-0.4] SD units increase	NR [10700000] (imputed)	N
863	chr17	36443578	36443579	rs186588455	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		17q12	Intergenic	rs186588455-A	0.964	6E-6	(liability model)	0.22	[0.12-0.32] unit decrease	NR [19725427] (imputed)	N
863	chr17	36477675	36477676	rs113702192	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs113702192-G	NR	9E-7		0.2467	[0.15-0.35] SD units decrease	NR [10700000] (imputed)	N
863	chr17	36549503	36549504	rs12051836	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based)	1,558 European ancestry resilient cases, 381 European ancestry controls with post-deployment mental disorder	NA	17q12	SOC7	rs12051836-T	0.1675	1E-6	(corrected for employment stress exposure)	1.69		Illumina [at least 664457] (imputed)	N
864	chr17	36593865	36593866	rs5820258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q12	ARHGAP23	rs5820258-A	0.254	6E-10		0.02554041	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
864	chr17	36593865	36593866	rs5820258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q12	ARHGAP23	rs5820258-A	0.2539	2E-10		0.02629572	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
864	chr17	36593865	36593866	rs5820258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q12	ARHGAP23	rs5820258-A	0.254	7E-10		0.0255005	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
864	chr17	36594646	36594647	rs62073420	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q12		rs62073420-A	0.27	3E-12		6.99	z score increase	Affymetrix [9061022] (imputed)	N
864	chr17	36604609	36604610	rs12450017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs12450017-C	0.74088	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
864	chr17	36609504	36609505	rs60312147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q12	NR	rs60312147-T	0.732795	2E-11		0.014428	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
864	chr17	36610975	36610976	rs55719924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	ARHGAP23	rs55719924-A	0.231183	1E-12		0.018651703	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
864	chr17	36613607	36613608	rs12051906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q12		rs12051906-?	NR	2E-11				NR [~ 8900000] (imputed)	N
864	chr17	36615966	36615967	rs35513223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q12	ARHGAP23	rs35513223-G	0.249588	1E-13		0.018887091	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
864	chr17	36615966	36615967	rs35513223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs35513223-?	NR	4E-12				NR [~ 8900000] (imputed)	N
864	chr17	36616058	36616059	rs4795281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q12	ARHGAP23	rs4795281-C	0.347904	1E-11		0.01582806	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
864	chr17	36616058	36616059	rs4795281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q12	ARHGAP23	rs4795281-C	0.347965	1E-9		0.014292836	[0.0097-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
864	chr17	36616058	36616059	rs4795281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs4795281-C	0.358013	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
864	chr17	36624595	36624596	rs12449707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q12	NR	rs12449707-T	0.247083	9E-13		0.015842	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
864	chr17	36627181	36627182	rs72823860	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q12	NR	rs72823860-?	NR	1E-6		0.0083085	[0.005-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
864	chr17	36644319	36644320	rs56016673	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	17q12	NR	rs56016673-T	NR	2E-6		0.091	[0.053-0.129] SD units increase	NR [10700000] (imputed)	N
864	chr17	36669124	36669125	rs72823866	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		ARHGAP23	rs72823866-G	0.02	1E-5				Illumina [1679420] (imputed)	N
864	chr17	36690693	36690694	rs56695130	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty	1,096 European ancestry cases, 2,418 European ancestry controls	NA	17q12	NR	rs56695130-T	0.08	1E-6		1.74	[1.39-2.18]	Illumina [5411522] (imputed)	N
865	chr17	36714002	36714003	rs2075051	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	17q12	SRCIN1	rs2075051-T	0.32	9E-6		0.012	NR unit increase	Illumina [1231747]	N
865	chr17	36814468	36814469	rs12450778	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	17q12	C17orf96	rs12450778-?	NR	2E-6	(females)	2.4201357		Affymetrix, Illumina [2928658] (imputed)	N
865	chr17	36814468	36814469	rs12450778	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	17q12	C17orf96	rs12450778-?	NR	2E-6		2.0929258		Affymetrix, Illumina [2928658] (imputed)	N
866	chr17	36835078	36835079	rs34727469	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q12	RPL23	rs34727469-T	0.14	1E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
866	chr17	36838023	36838024	rs71384258	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	17q12	NR	rs71384258-G	0.184897096242591	2E-8		0.0066035194	[0.0043-0.0089] unit increase	NR [NR]	N
866	chr17	36838023	36838024	rs71384258	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q12	NR	rs71384258-G	0.184897096242591	4E-8		0.0103628095	[0.0067-0.0141] unit increase	NR [NR]	N
866	chr17	36839518	36839519	rs7211564	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q12		rs7211564-A	0.36	2E-10		6.36	z score increase	Affymetrix [9061022] (imputed)	N
866	chr17	36839518	36839519	rs7211564	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q12	NR	rs7211564-A	0.3925	1E-11				NR [9056863] (imputed)	N
866	chr17	36846274	36846275	rs8077127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs8077127-?	NR	4E-8				NR [~ 8900000] (imputed)	N
866	chr17	36853839	36853840	rs150418526	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q12	C17orf96, MIR4734	rs150418526-C	0.01	6E-7	(EA)	0.447	[0.27-0.62] unit increase	Illumina [~ 9000000] (imputed)	N
866	chr17	36886827	36886828	rs11658500	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	17q12	CISD3	rs11658500-A	0.14	7E-11		0.037	[0.025-0.049] unit decrease	Affymetrix [27624732] (imputed)	N
866	chr17	36913806	36913807	rs12951408	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q12	PSMB3	rs12951408-T	0.439667	6E-12		0.0128461	[0.0092-0.0165] unit increase	NR [13737936] (imputed)	N
866	chr17	36913806	36913807	rs12951408	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q12		rs12951408-?	NR	2E-9		0.0123018	[0.0082-0.0164] unit increase	Affymetrix [20259828] (imputed)	N
866	chr17	36915539	36915540	rs35246838	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q12	PSMB3	rs35246838-T	0.8681	1E-7		0.0198	[0.012-0.027] unit increase	Affymetrix [19819130] (imputed)	N
866	chr17	36915539	36915540	rs35246838	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q12	PSMB3	rs35246838-T	0.8681	1E-27		0.0386	[0.032-0.046] unit increase	Affymetrix [19819130] (imputed)	N
866	chr17	36915539	36915540	rs35246838	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q12	PSMB3	rs35246838-T	0.8681	5E-11		0.0228	[0.016-0.03] unit increase	Affymetrix [19819130] (imputed)	N
866	chr17	36915539	36915540	rs35246838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q12		rs35246838-?	NR	1E-32				NR [~ 8900000] (imputed)	N
866	chr17	36920049	36920050	rs118080693	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	17q12		rs118080693-T	0.03699	6E-6		1.906	[1.442-2.52]	Affymetrix [7975321] (imputed)	N
866	chr17	36921650	36921651	rs758976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q12		rs758976-?	NR	1E-9				NR [~ 8900000] (imputed)	N
866	chr17	36922195	36922196	rs1043515	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q12	PIP4K2B	rs1043515-?	NR	4E-17		0.02785234	[0.021-0.034] unit increase	Illumina [27896057] (imputed)	N
866	chr17	36922195	36922196	rs1043515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q12		rs1043515-?	NR	7E-49				NR [~ 8900000] (imputed)	N
866	chr17	36922195	36922196	rs1043515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q12		rs1043515-?	NR	1E-14				NR [~ 8900000] (imputed)	N
866	chr17	36922195	36922196	rs1043515	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q12	PIP4K2B	rs1043515-A	0.45	3E-10		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
866	chr17	36924338	36924339	rs3744070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q12	NR	rs3744070-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
866	chr17	36924338	36924339	rs3744070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q12		rs3744070-?	NR	5E-8				NR [~ 8900000] (imputed)	N
866	chr17	36925749	36925750	rs2075060	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q12	PIP4K2B	rs2075060-A	0.547	1E-8		0.0363	[0.024-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
866	chr17	36929577	36929578	rs2338115	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q12	PIP4K2B	rs2338115-T	0.5555	1E-39		0.0251	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
866	chr17	36929577	36929578	rs2338115	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q12	NR	rs2338115-?	NR	9E-7	(female)	0.11886	[0.071-0.166] unit increase	Affymetrix [7794483] (imputed)	N
866	chr17	36929577	36929578	rs2338115	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q12	NR	rs2338115-?	NR	2E-14		0.16926	[0.13-0.21] unit increase	Affymetrix [7794483] (imputed)	N
866	chr17	36929577	36929578	rs2338115	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q12	NR	rs2338115-?	NR	1E-9	(male)	0.21402	[0.15-0.28] unit increase	Affymetrix [7794483] (imputed)	N
866	chr17	36959001	36959002	rs139189793	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q12		rs139189793-A	0.01	3E-8				NR [NR] (imputed)	N
866	chr17	36959001	36959002	rs139189793	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q12		rs139189793-A	0.01	2E-12				NR [NR] (imputed)	N
866	chr17	36959001	36959002	rs139189793	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q12		rs139189793-A	0.01	2E-6		0.89	[0.52-1.26] unit decrease	NR [NR] (imputed)	N
866	chr17	36959001	36959002	rs139189793	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function)	9,567 European ancestry individuals	NA	17q12		rs139189793-A	0.01	8E-7		0.45	[0.27-0.63] unit increase	NR [NR] (imputed)	N
867	chr17	36968220	36968221	rs7219007	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q12	CWC25	rs7219007-C	0.4791	1E-8		0.0785	[0.051-0.106] unit increase	Affymetrix [~ 11900000] (imputed)	N
867	chr17	36968709	36968710	rs113435706	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q12	NR	rs113435706-A	NR	9E-6	(female)	0.2403	[0.13-0.35] unit increase	Illumina [11133794] (imputed)	N
867	chr17	37029971	37029972	rs140564516	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q12	LASP1	rs140564516-A	0.01	4E-9	(EA)	0.5032	[0.34-0.67] unit increase	Illumina [~ 9000000] (imputed)	N
867	chr17	37076330	37076331	rs646097	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	17q12	LASP1	rs646097-?		9E-6	(endpoint 2, dominant)	2.173913	[NR]	Illumina [> 750000]	N
867	chr17	37083463	37083464	rs649997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q12		rs649997-A	NR	2E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
868	chr17	37100893	37100894	rs35152618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q12	FBXO47	rs35152618-A	0.352648	5E-10		0.014632101	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
868	chr17	37100893	37100894	rs35152618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	FBXO47	rs35152618-A	0.352642	8E-11		0.015301789	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
868	chr17	37101379	37101380	rs9906595	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q12	FBXO47	rs9906595-A	0.041	4E-6	(Light activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
868	chr17	37105981	37105982	rs78523330	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	17q12	FBXO47	rs78523330-G	0.04	2E-7		2.2222223		Illumina [4903804] (imputed)	N
868	chr17	37166992	37166993	rs113511226	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q12	NR	rs113511226-?		6E-6				Illumina [4322238] (imputed)	N
868	chr17	37214803	37214804	rs72821570	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q12	LOC100131347	rs72821570-?		4E-6				Illumina [4322238] (imputed)	N
869	chr17	37253994	37253994	rs577404345	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q12	NR	rs577404345-C	0.0122	7E-14	(ALDH1B1)	1.397	NR unit increase	Illumina [1671387] (imputed)	N
869	chr17	37266887	37266888	rs995029204	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Central Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q12		rs995029204-A	0.00592	2E-10		1.079	[0.75-1.41] unit decrease	Illumina [18349913] (imputed)	N
869	chr17	37280516	37280517	rs72823319	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	17q12	NR	rs72823319-A	NR	4E-6			unit decrease	Illumina [at least 1198956] (imputed)	N
869	chr17	37296628	37296629	rs140907835	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs140907835-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
869	chr17	37297822	37297823	rs35994633	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	17q12	PLXDC1	rs35994633-A	0.042	8E-7		0.17	NR unit increase	Illumina [6417232] (imputed)	N
869	chr17	37298788	37298789	rs79730542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs79730542-?	NR	3E-10				NR [~ 8900000] (imputed)	N
869	chr17	37310207	37310208	rs71369719	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	17q12	NR	rs71369719-G	1.0	4E-6		1.0	[-1.0776-3.0776]	Affymetrix [at least 143006] (imputed)	N
869	chr17	37316616	37316617	rs72823334	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7102 sp002315655 abundance in stool	5,959 Finnish ancestry individuals	NA	17q12		rs72823334-T	0.0740129	7E-9		0.0680348	[0.045-0.091] unit increase	Illumina [7980478] (imputed)	N
869	chr17	37330994	37330995	rs600086	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	17q12	CACNB1	rs600086-?	NR	3E-6		1.11	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
869	chr17	37331344	37331345	rs523516	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q12	NR	rs523516-T	0.176237627398483	4E-6	(IGP56)	0.1916	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
869	chr17	37332962	37332963	rs626657	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q12	NR	rs626657-C	0.861032878949711	2E-6	(IGP55)	0.2321	[0.14-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
869	chr17	37349654	37349655	rs16531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q12	Intergenic	rs16531-T	0.6596	3E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
869	chr17	37349654	37349655	rs16531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs16531-T	0.6602	1E-8	(MTAG)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
870	chr17	37359215	37359216	rs72823347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs72823347-T	NR	3E-9		0.0285	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
870	chr17	37359215	37359216	rs72823347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs72823347-T	NR	2E-9		0.0292	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr17	37372772	37372773	rs79873275	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	17q12		rs79873275-?	NR	2E-8		1.0686	[0.7-1.44] unit decrease	Affymetrix [NR] (imputed)	N
870	chr17	37372772	37372773	rs79873275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q12		rs79873275-?	NR	1E-14				NR [~ 8900000] (imputed)	N
870	chr17	37374805	37374806	rs6503496	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs6503496-T	NR	2E-9		0.0352	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr17	37374805	37374806	rs6503496	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs6503496-T	NR	8E-10		0.0362	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
870	chr17	37388566	37388567	rs75097049	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q12		rs75097049-C	0.938	1E-17				Affymetrix [10369434] (imputed)	N
870	chr17	37388566	37388567	rs75097049	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs75097049-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
870	chr17	37393531	37393531	rs56213746	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q12		rs56213746-A	0.30218	2E-8		0.0279641	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
870	chr17	37396525	37396526	rs746154778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q12	RP11-690G19.4	rs746154778-C	0.7169	2E-9		0.0244111	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr17	37396678	37396679	rs11078893	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	17q12	PPP1R1B	rs11078893-C	0.6912	8E-39		13.029	NR z score decrease	Illumina [26237160] (imputed)	N
870	chr17	37400005	37400006	rs543894534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	RP11-690G19.4	rs543894534-G	0.003	4E-10		0.13948305	[0.096-0.183] unit increase	Affymetrix [93095623] (imputed)	N
870	chr17	37401050	37401051	rs11078895	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	17q12	LOC101929578	rs11078895-A	0.259	5E-6		0.00201	[0.0011-0.0029] unit decrease	Affymetrix [1219546] (imputed)	N
870	chr17	37402279	37402280	rs2100651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs2100651-C	0.25748	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
870	chr17	37403978	37403979	rs3964723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs3964723-T	0.751803	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
870	chr17	37403978	37403979	rs3964723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q12	NR	rs3964723-T	0.744959	2E-14		0.01655	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
870	chr17	37407134	37407135	rs2168785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q12		rs2168785-T	NR	5E-67		0.0329	[0.029-0.037] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
870	chr17	37409864	37409865	rs755500	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs755500-A	0.752272	3E-46				Affymetrix, Illumina [24332387] (imputed)	N
870	chr17	37424069	37424070	rs72823390	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q12	FBXL20	rs72823390-T	0.023	4E-6		0.121	[0.07-0.172] unit decrease	Affymetrix [7947838] (imputed)	N
870	chr17	37430088	37430088	rs397773316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q12	FBXL20	rs397773316-GA	0.67684	2E-17		0.021340834	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
870	chr17	37430088	37430088	rs397773316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q12	FBXL20	rs397773316-GA	0.676867	9E-13		0.017816078	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
870	chr17	37433485	37433486	rs72823393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q12		rs72823393-G	NR	3E-14		0.0246	[0.018-0.031] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
870	chr17	37433485	37433486	rs72823393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q12		rs72823393-G	NR	2E-13		0.0244	[0.018-0.031] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
870	chr17	37435377	37435378	rs801429	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q12	CDK12, ERBB2, FBXL20, GRB7, IKZF3, MED1, MIEN1, MIR4728, NEUROD2, PGAP3, PNMT, PPP1R1B, STARD3, TCAP	rs801429-T	0.156033	3E-10		1.0544508	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
870	chr17	37440173	37440173	rs3079637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q12	FBXL20	rs3079637-ATCCCGGT	0.251104	1E-34		0.031539	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr17	37458871	37458872	rs801417	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q12	NR	rs801417-T	0.152386	7E-36		0.032066	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
870	chr17	37459512	37459512	rs397975200	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q12	FBXL20	rs397975200-TAAA		1E-11		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
870	chr17	37461017	37461018	rs677888	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	17q12	FBXL20	rs677888-T	NR	5E-10		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
870	chr17	37461017	37461018	rs677888	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	17q12	FBXL20	rs677888-T	0.7598	7E-10		0.0143186	[0.0098-0.0189] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
870	chr17	37461017	37461018	rs677888	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	17q12	FBXL20	rs677888-G	NR	4E-8		1.0436248	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
870	chr17	37461642	37461643	rs10491129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q12	FBXL20	rs10491129-G	0.254185	2E-56		0.04076213	[0.036-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr17	37464689	37464690	rs76144645	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs76144645-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
870	chr17	37469171	37469171	rs775481512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q12	FBXL20	rs775481512-CTT	0.239798	5E-11		0.018060135	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
870	chr17	37478047	37478048	rs8072297	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	17q12	FBXL20	rs8072297-T	0.262993	1E-17		0.05967	[0.047-0.072] unit decrease	Illumina [24961484] (imputed)	N
870	chr17	37480031	37480031	rs375479842	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	17q12		rs375479842-C	0.774512	5E-19		0.038906	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
870	chr17	37483862	37483863	rs180994755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q12		rs180994755-?	NR	1E-9				NR [~ 8900000] (imputed)	N
871	chr17	37499948	37499949	rs9916302	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	17q12	CDK12, FBXL20	rs9916302-T	0.74	5E-15	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
871	chr17	37504932	37504933	rs8069451	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	17q12	NR	rs8069451-T	NR	4E-12		0.2183	[0.16-0.28] unit decrease	Illumina [up to 525976] (imputed)	N
871	chr17	37504932	37504933	rs8069451	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q12	FBXL20	rs8069451-T	0.7494	7E-14		0.0202	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
871	chr17	37504932	37504933	rs8069451	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q12	FBXL20	rs8069451-T	0.7494	2E-12		0.0189	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
871	chr17	37504932	37504933	rs8069451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q12		rs8069451-?	NR	1E-16				NR [~ 8900000] (imputed)	N
871	chr17	37506188	37506189	rs35010353	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q12	FBXL20	rs35010353-CA	0.656686	3E-12	(1-methylhistidine)	0.167	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
871	chr17	37506188	37506189	rs35010353	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q12	FBXL20	rs35010353-CA	0.656686	2E-17	(methionine sulfone)	0.202	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
871	chr17	37512467	37512469	rs549640876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q12	FBXL20	rs549640876-C	0.325604	1E-9		0.014901567	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr17	37513075	37513075	rs36030405	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q12	NR	rs36030405-AT	0.2349	3E-21		0.002508	[0.002-0.003] unit increase	Affymetrix [NR] (imputed)	N
871	chr17	37524652	37524653	rs6503506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q12		rs6503506-A	NR	1E-24		0.0265	[0.021-0.032] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
871	chr17	37533759	37533759	rs541524196	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17q12	NR	rs541524196-G	0.161	3E-26		0.005	[0.0042-0.0058] unit increase	Affymetrix [NR] (imputed)	N
871	chr17	37540771	37540772	rs9899069	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	17q12	NR	rs9899069-G	0.1614	2E-8		0.015609549	[0.01-0.021] unit decrease	Affymetrix [10613246] (imputed)	N
871	chr17	37542507	37542508	rs8073511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q12		rs8073511-C	NR	8E-13		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	1E-27		0.0374	[0.031-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	4E-18		0.0285	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	2E-9		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	3E-31		0.038	[0.032-0.044] unit increase	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	2E-33		0.0395	[0.033-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	2E-12		0.0242	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q12	NR	rs7208487-G	NR	8E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	17q12	CDK12	rs7208487-T	NR	9E-14		0.0091	[0.0067-0.0115] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
871	chr17	37543448	37543449	rs7208487	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	17q12	ORMDL3	rs7208487-T	0.84	8E-7		1.32	[1.18-1.48]	Illumina [507467]	N
871	chr17	37551987	37551988	rs10491128	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	17q12	FBXL20	rs10491128-A	0.296	4E-15		0.461	[0.35-0.58] unit increase	Affymetrix [NR] (imputed)	N
871	chr17	37552849	37552849	rs35394824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q12	FBXL20	rs35394824-CA	0.1908	4E-14		0.022082234	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
871	chr17	37553218	37553219	rs35322295	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	17q12	NR	rs35322295-?		4E-6				Illumina [up to 6969139] (imputed)	N
871	chr17	37553218	37553219	rs35322295	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	17q12	FBXL20	rs35322295-A	0.666397143	6E-7		0.164015	[0.099-0.229] unit decrease	Illumina [6952813] (imputed)	N
871	chr17	37553650	37553651	rs12600751	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs12600751-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
871	chr17	37553650	37553651	rs12600751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs12600751-C	0.2518	3E-11	(conditional-joint)	0.0108	[0.0077-0.0139] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
871	chr17	37555402	37555403	rs8076546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q12	NR	rs8076546-A	0.252883	4E-24		0.022464	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
871	chr17	37555626	37555627	rs2338796	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	17q12	FBXL20	rs2338796-A	0.67	1E-8	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
871	chr17	37555626	37555627	rs2338796	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	17q12	FBXL20	rs2338796-A	0.67	3E-8		0.00989	[0.0064-0.0134] unit increase	Affymetrix [11709857] (imputed)	N
871	chr17	37561130	37561131	rs72825175	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q12	NR	rs72825175-A	NR	8E-12		0.0359	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
871	chr17	37561612	37561613	rs6503513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q12	Intergenic	rs6503513-A	0.8021	9E-9	(MTAG)	0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
871	chr17	37574591	37574592	rs146644295	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q12	ARL5C, CACNB1, CDK12, ERBB2, FBXL20, GRB7, IKZF3, MED1, MIEN1, MIR4728, NEUROD2, PGAP3, PLXDC1, PNMT, PPP1R1B, RPL19, STAC2, STARD3, TCAP	rs146644295-C	0.02236	2E-14		1.1779952	[1.14-1.22]	Affymetrix [8274727] (imputed)	N
871	chr17	37576545	37576546	rs4795364	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q12	MED1	rs4795364-A	0.744	3E-8		5.532	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
871	chr17	37579382	37579383	rs145835664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q12	NR	rs145835664-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
871	chr17	37579382	37579383	rs145835664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q12	NR	rs145835664-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
871	chr17	37579382	37579383	rs145835664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs145835664-?	NR	8E-23				Affymetrix [~ 8270000] (imputed)	N
871	chr17	37607903	37607904	rs7212715	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	17q12	MED1	rs7212715-?	NR	4E-14		0.03761	[0.028-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
871	chr17	37607903	37607904	rs7212715	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	17q12	MED1	rs7212715-?	NR	9E-13		0.03478	[0.025-0.044] unit increase novel	Illumina [6108953] (imputed)	N
871	chr17	37610122	37610123	rs11655550	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	17q12	MED1	rs11655550-C	0.16	7E-7		1.475	[1.368-1.59]	Illumina [NR]	N
871	chr17	37611351	37611352	rs8067511	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q12	MED1, CDK12	rs8067511-T	0.8	1E-8		18.3	[12.03-24.57] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
871	chr17	37611351	37611352	rs8067511	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q12		rs8067511-?	NR	1E-7		14.77	[9.3-20.24] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
871	chr17	37615743	37615744	rs72825193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs72825193-?	NR	9E-16				NR [~ 8900000] (imputed)	N
872	chr17	37620626	37620627	rs35497503	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q12	STAC2, FBXL20, MED1, CDK12, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PGAP3, ERBB2, GRB7, IKZF3, ZPBP2, GSDMB, ORMDL3, LRRC3C, GSDMA, MED24	rs35497503-?		1E-24				Affymetrix, Illumina [NR] (imputed)	N
872	chr17	37623172	37623173	rs71147340	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	17q12		rs71147340-C	0.34	3E-9		0.57	[0.37-0.77] ml/min/1.73 m2 decrease	NR [43622178]	N
872	chr17	37624789	37624790	rs7219014	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	17q12	PNMT	rs7219014-A	0.25	4E-26	(histidine/?-methylhistidine)	0.156	[NR] unit decrease	Affymetrix [620456]	N
872	chr17	37625911	37625912	rs11078901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	17q12		rs11078901-T	0.805318	3E-12		0.0252143	[0.018-0.032] unit increase	Illumina [13478778] (imputed)	N
872	chr17	37631923	37631924	rs11078903	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	17q12	CDK12	rs11078903-A	NR	9E-6		0.564	[0.32-0.81] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
872	chr17	37632087	37632088	rs12449852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q12		rs12449852-?	NR	2E-11				NR [~ 8900000] (imputed)	N
872	chr17	37633830	37633831	rs12451585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q12		rs12451585-A	NR	3E-8		0.0195	[0.013-0.026] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
872	chr17	37633834	37633835	rs12451586	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		17q12	CDK12	rs12451586-A	NR	3E-15		0.0092	[0.007-0.0114] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
872	chr17	37635649	37635650	rs72825201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs72825201-C	NR	1E-23		0.0484	[0.039-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
872	chr17	37635649	37635650	rs72825201	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs72825201-C	NR	5E-26		0.051	[0.042-0.06] unit increase	Affymetrix [9000000] (imputed)	N
872	chr17	37637887	37637888	rs12940667	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	17q12	RNU6-981P	rs12940667-?	NR	9E-7		4.912	NR unit decrease	Illumina [up to 1520000] (imputed)	N
872	chr17	37641401	37641402	rs11650776	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q12	NR	rs11650776-A	0.6975	1E-7		0.027	[0.017-0.037] unit increase	Affymetrix [up to 27624732] (imputed)	N
872	chr17	37652209	37652210	rs12947281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q12	NR	rs12947281-G	0.257412	8E-14		0.01641	[0.012-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
872	chr17	37670993	37670994	rs4794813	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q12	CDK12	rs4794813-A	0.2439	2E-63		0.0055	[0.0047-0.0063] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
872	chr17	37670993	37670994	rs4794813	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	17q12	CDK12	rs4794813-A	0.2086	9E-6		0.0039	[0.0021-0.0057] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
872	chr17	37670993	37670994	rs4794813	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q12	CDK12	rs4794813-A	0.2439	6E-6		0.0037	[0.0021-0.0053] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
872	chr17	37696234	37696235	rs4239222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs4239222-T	0.754397	1E-18				Affymetrix, Illumina [24653286] (imputed)	N
872	chr17	37696234	37696235	rs4239222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q12	NR	rs4239222-T	0.74787	2E-20		0.019782	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
872	chr17	37696851	37696852	rs4794814	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q12	CDK12	rs4794814-A	0.7512	2E-55		0.0059	[0.0051-0.0067] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
872	chr17	37711359	37711360	rs111458598	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	17q12		rs111458598-?	NR	3E-8		1.088	[0.7-1.47] unit decrease	Affymetrix [NR] (imputed)	N
872	chr17	37716770	37716771	rs4795384	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	17q12		rs4795384-?	NR	2E-8		0.546371	[0.36-0.74] ml/min/1.73 m2 decrease	NR [43622178]	N
872	chr17	37716770	37716771	rs4795384	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	17q12	CDK12, MED1	rs4795384-G	0.763	2E-24		0.395	[0.2-0.59] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
872	chr17	37723290	37723291	rs8081144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs8081144-A	NR	7E-19		0.0377	[0.029-0.046] unit increase	Affymetrix [9000000] (imputed)	N
872	chr17	37723290	37723291	rs8081144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q12	NR	rs8081144-A	NR	9E-20		0.0387	[0.03-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
872	chr17	37725403	37725404	rs7218361	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	17q12	ERBB2	rs7218361-A	0.04	1E-6		1.25	[1.14-1.37]	Illumina [~ 9000000] (imputed)	N
872	chr17	37727949	37727950	rs8182252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs8182252-T	0.817812	9E-13				Affymetrix, Illumina [22063850] (imputed)	N
872	chr17	37727949	37727950	rs8182252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q12	NR	rs8182252-T	0.828806	1E-12		0.017915	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
872	chr17	37739273	37739274	rs1619021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q12		rs1619021-A	NR	8E-30		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
872	chr17	37740160	37740161	rs1877030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q12		rs1877030-C	NR	4E-29		0.0306	[0.025-0.036] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
872	chr17	37740160	37740161	rs1877030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q12		rs1877030-C	NR	1E-26		0.0293	[0.024-0.035] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
872	chr17	37740160	37740161	rs1877030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q12		rs1877030-C	0.845294	7E-28		0.0346811	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
872	chr17	37740160	37740161	rs1877030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q12		rs1877030-C	0.845299	2E-21		0.029050633	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
872	chr17	37740160	37740161	rs1877030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1877030-C	0.839022	1E-39				Affymetrix, Illumina [24246363] (imputed)	N
872	chr17	37740160	37740161	rs1877030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1877030-C	0.839074	7E-27				Affymetrix, Illumina [20825802] (imputed)	N
872	chr17	37740160	37740161	rs1877030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q12		rs1877030-?	NR	4E-27				NR [~ 8900000] (imputed)	N
872	chr17	37740160	37740161	rs1877030	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	17q12	MED1	rs1877030-T	NR	1E-8		0.102659	[0.068-0.138] unit decrease	Illumina [8380626] (imputed)	N
872	chr17	37740160	37740161	rs1877030	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	17q12	MED1	rs1877030-C	0.83	2E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
872	chr17	37742382	37742383	rs9903269	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q12	NR	rs9903269-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
872	chr17	37742382	37742383	rs9903269	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q12	NR	rs9903269-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
872	chr17	37742382	37742383	rs9903269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q12		rs9903269-?	NR	1E-11				NR [~ 8900000] (imputed)	N
872	chr17	37742393	37742394	rs117513282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q12	Intergenic	rs117513282-A	0.97	2E-9		0.0342	[0.023-0.045] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
872	chr17	37745978	37745979	rs11654954	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	17q12	CDK12, NEUROD2	rs11654954-A	NR	2E-8		5.602	z-score increase	Illumina [632375]	N
872	chr17	37746306	37746307	rs11078916	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q12	NR	rs11078916-C	0.7039	5E-13		0.0373	[0.027-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
872	chr17	37746306	37746307	rs11078916	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q12	NR	rs11078916-C	0.6474	1E-14		0.0326	[0.024-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
872	chr17	37746358	37746359	rs11078917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q12	NR	rs11078917-C	0.718351	5E-47		0.030293	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
872	chr17	37746358	37746359	rs11078917	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q12	intergenic	rs11078917-A	0.3803	3E-30		0.0336	[0.028-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
872	chr17	37746358	37746359	rs11078917	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q12	intergenic	rs11078917-C	0.721	3E-11		0.02640598	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
872	chr17	37746846	37746847	rs4795386	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17q12	NR	rs4795386-?	NR	7E-6		0.090079	[0.051-0.129] unit decrease	NR [13958389] (imputed)	N
873	chr17	37767452	37767453	rs4795388	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q12	NR	rs4795388-G		1E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
873	chr17	37770004	37770005	rs12453682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q12	NEUROD2	rs12453682-T	0.695303	2E-38		0.031214228	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
873	chr17	37770004	37770005	rs12453682	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q12	NR	rs12453682-T	0.685	1E-9		0.00959375	[0.0065-0.0127] unit increase	NR [9732723] (imputed)	N
873	chr17	37770004	37770005	rs12453682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	17q12		rs12453682-?	NR	6E-8				NR [~ 8900000] (imputed)	N
873	chr17	37770004	37770005	rs12453682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q12		rs12453682-T	0.6947	2E-11		0.0102	[0.0073-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
873	chr17	37770004	37770005	rs12453682	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q12	Intergenic	rs12453682-T	0.6947	5E-11	(MTAG)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
873	chr17	37770004	37770005	rs12453682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q12	NEUROD2	rs12453682-T	0.6933	2E-14		0.02985445	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
873	chr17	37770004	37770005	rs12453682	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q12	NEUROD2	rs12453682-T	0.6933	3E-10		0.02448577	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
873	chr17	37776643	37776644	rs112037479	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs112037479-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
873	chr17	37784463	37784464	rs1495099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q12	PPP1R1B	rs1495099-G	0.716417	9E-19		0.021742849	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
873	chr17	37784463	37784464	rs1495099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q12	PPP1R1B	rs1495099-G	0.716416	1E-19		0.022311654	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
873	chr17	37784463	37784464	rs1495099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q12	NR	rs1495099-G	0.665428	2E-17				Affymetrix, Illumina [24558453] (imputed)	N
873	chr17	37784463	37784464	rs1495099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q12	NR	rs1495099-G	0.71007	3E-20		0.019147	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
873	chr17	37784463	37784464	rs1495099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q12		rs1495099-?	NR	1E-40				NR [~ 8900000] (imputed)	N
873	chr17	37794350	37794351	rs4794817	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q12	STARD3, PPP1R1B, TCAP, PNMT, NEUROD2, PGAP3	rs4794817-T	0.18379	8E-27		1.091298	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
873	chr17	37800987	37800988	rs147005258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q12		rs147005258-?	NR	5E-26				NR [~ 8900000] (imputed)	N
873	chr17	37807697	37807698	rs9972882	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	17q12	STARD3	rs9972882-A	NR	2E-9		5.99	z-score increase	Illumina [632375]	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	3E-11		0.0260931	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	5E-10		0.0246111	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	8E-13		0.0280197	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	6E-10		0.0246956	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	4E-12		0.0268979	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	6E-9		0.0234745	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	5E-8		0.0224511	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	3E-9		0.0240884	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	9E-13		0.028114	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	2E-9		0.0243185	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q12		rs881844-C	0.335084	1E-9		0.0242789	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37810217	37810218	rs881844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q12		rs881844-G	NR	1E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
873	chr17	37810217	37810218	rs881844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q12		rs881844-G	NR	3E-35		0.0266	[0.022-0.031] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q12	STARD3	rs881844-G	NR	8E-28				Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q12	STARD3	rs881844-G	NR	2E-28	(EA)			Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q12	STARD3	rs881844-G	NR	6E-38				Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q12	STARD3	rs881844-G	NR	4E-35	(EA)			Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q12	STARD3	rs881844-G	NR	8E-17		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q12	STARD3	rs881844-G	NR	2E-17	(EA)	0.01	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q12	STARD3	rs881844-G	NR	2E-10		0.006041	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q12	STARD3	rs881844-G	NR	1E-8	(EA)	0.009074	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
873	chr17	37810217	37810218	rs881844	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs881844-C	NR	6E-11		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37810217	37810218	rs881844	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs881844-C	0.345	2E-9	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37810794	37810795	rs72827176	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q12		rs72827176-C	0.947	2E-12				Affymetrix [10369434] (imputed)	N
873	chr17	37810794	37810795	rs72827176	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q12	CDK12, ERBB2, FBXL20, GRB7, IKZF3, MED1, MIEN1, MIR4728, NEUROD2, PGAP3, PNMT, PPP1R1B, STAC2, STARD3, TCAP	rs72827176-C	0.946389	5E-9		1.0825089	[1.06-1.11]	Affymetrix [8274727] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	5E-10		0.024518	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	1E-13		0.0284985	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	1E-9		0.0240123	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	8E-13		0.0276101	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	3E-13		0.027967	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	2E-14		0.029516	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	2E-11		0.0263732	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	3E-14		0.0293545	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	7E-10		0.0244127	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	5E-14		0.0291367	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17q12		rs11869286-G	0.333601	4E-12		0.0268917	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
873	chr17	37813855	37813856	rs11869286	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	17q12		rs11869286-C	0.667	5E-8	(EA)	0.0071	[0.0046-0.0096] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
873	chr17	37813855	37813856	rs11869286	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	17q12	NR	rs11869286-C	0.6652	7E-21	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
873	chr17	37813855	37813856	rs11869286	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs11869286-G	NR	3E-11		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37813855	37813856	rs11869286	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs11869286-G	0.34	2E-9	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37813855	37813856	rs11869286	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q12	STARD3	rs11869286-G	0.35	3E-17		0.032	[NR] unit decrease	NR [NR] (imputed)	N
873	chr17	37813855	37813856	rs11869286	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q12	STARD3	rs11869286-C	0.34	3E-14		0.51	[0.35-0.67] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
873	chr17	37814079	37814080	rs1877031	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q12	STARD3	rs1877031-G		4E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
873	chr17	37814079	37814080	rs1877031	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q12	STARD3	rs1877031-G	0.333312	2E-34		0.0254679	[0.021-0.03] unit decrease	Affymetrix [NR] (imputed)	N
873	chr17	37814079	37814080	rs1877031	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	17q12	STARD3	rs1877031-A	0.675	1E-21	(Trans-ethnic initial)	0.0336	[0.027-0.041] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
873	chr17	37814686	37814687	rs36015615	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	17q12	STARD3	rs36015615-A	1.63E-4	3E-8		1.16	[0.75-1.57] unit increase	Illumina [~ 250000] (imputed)	N
873	chr17	37815303	37815304	rs11556624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q12	NR	rs11556624-C	NR	4E-11		0.0534	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
873	chr17	37815898	37815899	rs11658786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q12		rs11658786-G	0.333635	1E-16		0.0321429	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
873	chr17	37815898	37815899	rs11658786	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	17q12		rs11658786-G	0.333637	7E-11		0.0257313	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
873	chr17	37815898	37815899	rs11658786	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q12	STARD3	rs11658786-G	0.333147	2E-51		0.0305637	[0.027-0.035] unit decrease	Affymetrix [NR] (imputed)	N
873	chr17	37815898	37815899	rs11658786	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q12	NR	rs11658786-A	0.665	7E-11		0.00742554	[0.0052-0.0097] unit decrease	NR [9732723] (imputed)	N
873	chr17	37821434	37821435	rs931992	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	17q12		rs931992-T	0.5743	4E-8		0.0061	[0.0039-0.0083] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
873	chr17	37822310	37822311	rs1053651	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	17q12	TCAP, PNMT, STARD3	rs1053651-A	0.27	1E-9		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
873	chr17	37824338	37824339	rs3764351	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q12		rs3764351-G	0.340736	2E-12		0.0274023	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
873	chr17	37824338	37824339	rs3764351	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q12		rs3764351-G	0.340736	4E-8		0.0227044	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
873	chr17	37824338	37824339	rs3764351	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q12	STARD3	rs3764351-?	NR	3E-12		0.006892	[0.0049-0.0089] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
873	chr17	37824338	37824339	rs3764351	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q12	NR	rs3764351-A	0.657	4E-8		0.014749162	[0.0095-0.02] unit decrease	NR [~ 10000000] (imputed)	N
873	chr17	37824544	37824545	rs876493	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	17q12	ERBB2, PGAP3, TCAP, STARD3, PNMT	rs876493-G	NR	1E-6		1.1111112	[1.06-1.16]	NR [NR]	N
873	chr17	37827669	37827670	rs3152	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs3152-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
873	chr17	37829569	37829570	rs903504	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q12	PGAP3	rs903504-C	0.316895	3E-56		0.00378397	[0.0033-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
873	chr17	37830446	37830447	rs2934956	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs2934956-T	NR	1E-12		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37830446	37830447	rs2934956	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q12	NR	rs2934956-T	0.332	9E-10	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
873	chr17	37832365	37832366	rs2934952	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	17q12	PGAP3	rs2934952-G	NR	1E-9		6.086	z-score increase	Illumina [632375]	N
873	chr17	37832703	37832704	rs2941505	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q12	PGAP3	rs2941505-A	0.32	7E-31		11.6	z-score increase	Affymetrix [4311822] (imputed)	N
873	chr17	37832703	37832704	rs2941505	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	17q12	STARD3, PGAP3, CDK12	rs2941505-A	0.32	2E-9		0.13	[0.091-0.169] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
873	chr17	37833327	37833328	rs2934951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q12		rs2934951-G	NR	2E-43		0.0347	[0.03-0.04] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
873	chr17	37834366	37834367	rs732083	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	17q12		rs732083-G	0.333	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
873	chr17	37834976	37834977	rs8077172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17q12		rs8077172-?	NR	2E-18				NR [~ 8900000] (imputed)	N
873	chr17	37846511	37846512	rs2517959	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	17q12	ERBB2	rs2517959-T	0.67	5E-9		1.13	[1.09-1.17]	Affymetrix, Illumina [9692718] (imputed)	N
873	chr17	37847135	37847136	rs146110680	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q12	Intergenic	rs146110680-A	0.0213	2E-9	(MTAG)	0.0373	[0.025-0.049] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
873	chr17	37876834	37876835	rs2952156	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	17q12	ERBB2, PGAP3, MIEN1	rs2952156-A	0.30000000000000004	2E-30		1.1494253	[1.12-1.19]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
873	chr17	37879587	37879588	rs1136201	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17q12	ERBB2	rs1136201-A	0.7482	8E-29	(EA)	0.0047	[0.0039-0.0055] unit increase	Affymetrix [NR] (imputed)	N
874	chr17	37885382	37885383	rs4252665	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	17q12	ERBB2, MIEN1	rs4252665-?	NR	2E-12		1.46	[1.26-1.70]	Illumina [at least 5000000] (imputed)	N
874	chr17	37888197	37888198	rs143160101	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	17q12		rs143160101-C	NR	6E-6		1.2144766	[1.13-1.30]	Illumina [11600722] (imputed)	N
874	chr17	37893483	37893484	rs4795393	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q12	GRB7	rs4795393-?	NR	1E-8		0.016584838	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
874	chr17	37906737	37906738	rs180809456	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17q12		rs180809456-?	NR	5E-8				Affymetrix [NR] (imputed)	N
874	chr17	37910367	37910368	rs2941522	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	17q12	GRB7	rs2941522-C	0.575	7E-9		0.069	[0.045-0.093] unit decrease	Affymetrix, Illumina [7374092] (imputed)	N
874	chr17	37910367	37910368	rs2941522	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	17q12	IKZF3	rs2941522-T	0.4829	2E-12		1.11	[1.08-1.15]	Affymetrix [33771858] (imputed)	N
874	chr17	37912376	37912377	rs12946510	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	17q12	NR	rs12946510-C	0.682	7E-11	(Latino)	1.4705882	[1.32-1.67]	Affymetrix [9737707] (imputed)	N
874	chr17	37912376	37912377	rs12946510	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	17q12	GRB7, IKZF3	rs12946510-C	NR	1E-10		1.4084507	[1.27-1.56]	Affymetrix [9737707] (imputed)	N
874	chr17	37912376	37912377	rs12946510	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	17q12	GSDMB, ORMDL3, LRRC3C, GRB7, ZPBP2, GSDMA, IKZF3	rs12946510-?		2E-16				Illumina [9578670] (imputed)	N
874	chr17	37912376	37912377	rs12946510	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	17q12	GSDMB, ORMDL3, LRRC3C, GRB7, ZPBP2, GSDMA, IKZF3	rs12946510-?		2E-26				Illumina [9725440] (imputed)	N
874	chr17	37912376	37912377	rs12946510	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q12	GSDMB, ORMDL3, LRRC3C, GRB7, ZPBP2, GSDMA, IKZF3	rs12946510-?		1E-16				Illumina [9560910] (imputed)	N
874	chr17	37912376	37912377	rs12946510	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs12946510-A	0.4675	1E-25	(EA)	1.141072	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
874	chr17	37912376	37912377	rs12946510	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs12946510-A	0.4675	2E-39	(EA)	1.1405234	[1.12-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
874	chr17	37912376	37912377	rs12946510	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q12	NR	rs12946510-A	0.4675	2E-24	(EA)	1.1311512	[1.11-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
874	chr17	37912376	37912377	rs12946510	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	17q12	IKZF3	rs12946510-A	0.48	3E-9		1.07		Illumina [161311]	N
874	chr17	37912376	37912377	rs12946510	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q12	GSDMB, IKZF3, GSDMA, ZPBP2, ORMDL3	rs12946510-T	0.465	4E-38		1.157	[1.124-1.19]	Affymetrix, Illumina [1230000] (imputed)	N
874	chr17	37916822	37916823	rs3764354	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs3764354-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
874	chr17	37921193	37921194	rs2941509	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or systemic lupus erythematosus	741 European ancestry marginal zone lymphoma cases, 7,219 European ancestry systemic lupus erythematosus cases, 21,982 European ancestry controls	NA	17q12	IKZF3	rs2941509-T	NR	2E-8		1.4118		Illumina [~ 600000] (imputed)	N
874	chr17	37921193	37921194	rs2941509	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	17q12	IKZF3	rs2941509-?	0.032	4E-6	(EA)	1.41	[NR]	NR [6344733] (imputed)	N
874	chr17	37921193	37921194	rs2941509	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	17q12	HER-2, C17orf37, GRB7, ZNFN1A3, ZBPB2, GSDMB, IKZF3, ERBB2	rs2941509-A		8E-9		1.35	[1.22-1.49]	Illumina [644674]	N
874	chr17	37921741	37921742	rs907091	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	17q12	IKZF3	rs907091-C	0.514323	1E-10		0.00342225	[0.0024-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
874	chr17	37921741	37921742	rs907091	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	17q12	NR	rs907091-T	NR	2E-63		0.4839	[0.43-0.54] unit increase	Illumina [up to 525976] (imputed)	N
874	chr17	37921741	37921742	rs907091	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	17q12	NR	rs907091-C		4E-9		1.29	[1.19-1.41]	Illumina [109812]	N
874	chr17	37922258	37922259	rs907092	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma	3,075 African ancestry, European ancestry, Native American ancestry females	NA	17q12		rs907092-A	NR	6E-11		0.69	[0.54-0.89]	Affymetrix [6680224] (imputed)	N
874	chr17	37922258	37922259	rs907092	30787307	Daya M	2019-02-20	Nat Commun	Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations.	Adult asthma	4,235 African American Afro-Caribbean cases, 5,283 African American Afro-Caribbean controls, 2774 Hispanic cases, 2,362 Hispanic controls	NA	17q12	GSDMB, ORMDL3, ZPBP2, ERBB2	rs907092-G	0.80	4E-12		1.25	[1.18-1.33]	Affymetrix, Illumina [23328733] (imputed)	N
874	chr17	37922258	37922259	rs907092	28461288	Yan Q	2017-05-01	Eur Respir J	A meta-analysis of genome-wide association studies of asthma in Puerto Ricans.	Asthma	1,666 Puerto Rican child cases, 478 Puerto Rican adult cases, 1,505 Puerto Rican child controls, 1,388 Puerto Rican adult controls	NA	17q12	GRB7, IKZF3	rs907092-G	0.66	1E-12		1.41		Affymetrix, Illumina [7485508] (imputed)	N
874	chr17	37922258	37922259	rs907092	19458352	Hirschfield GM	2009-05-20	N Engl J Med	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cholangitis	505 European ancestry cases, 1,507 European ancestry controls	526 European ancestry cases, 1,206 European ancestry controls	17q12	IKZF3	rs907092-A	0.45	8E-6		1.29	[1.15-1.44]	Illumina [305724]	N
874	chr17	37936248	37936249	rs13380871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q12		rs13380871-C	NR	6E-17		0.0574	[0.044-0.071] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
874	chr17	37938046	37938047	rs10445308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	17q12		rs10445308-T	0.328463137	2E-10		0.09173878	[0.063-0.12] unit decrease	Illumina [13429513] (imputed)	N
874	chr17	37938046	37938047	rs10445308	26542096	Marenholz I	2015-11-06	Nat Commun	Meta-analysis identifies seven susceptibility loci involved in the atopic march.	Atopic march	1,151 European ancestry early-onset eczema and childhood asthma cases, 10,030 European ancestry controls	1,277  European ancestry early-onset eczema and childhood asthma cases, 7,004  European ancestry controls	17q12	IKZF3	rs10445308-C	0.529	5E-8		1.22	[1.14-1.30]	Affymetrix, Illumina [1633153] (imputed)	N
874	chr17	37939838	37939839	rs12942330	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	17q12		rs12942330-T	NR	6E-15		0.318637	[0.24-0.4] unit increase	NR [5275424] (imputed)	N
874	chr17	37943730	37943731	rs9911634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q12		rs9911634-?	NR	1E-31				NR [~ 8900000] (imputed)	N
874	chr17	37946972	37946972	rs35030093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q12	IKZF3	rs35030093-CT	0.034032	8E-59		0.10082131	[0.089-0.113] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr17	37949923	37949924	rs17676191	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q12	NR	rs17676191-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
874	chr17	37955554	37955555	rs13313564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q12	IKZF3	rs13313564-A	0.0346	2E-9		0.05853855	[0.039-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr17	37962844	37962845	rs79989390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.1	IKZF3	rs79989390-A	0.03442	1E-37		0.078413375	[0.066-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr17	37962986	37962987	rs4795395	30643196	Hitomi Y	2019-01-14	Sci Rep	POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33.	Primary biliary cholangitis	1,855 Japanese ancestry cases, 1,719 Japanese ancestry controls	NA	17q21.1	ZPBP2, GSDMB, IKZF3	rs4795395-?	NR	4E-12		1.42		Affymetrix [NR] (imputed)	N
874	chr17	37970148	37970149	rs9909593	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.1	IKZF3	rs9909593-G	NR	9E-17		1.081198	NR	Affymetrix, Illumina [8278136] (imputed)	N
874	chr17	37970364	37970365	rs12943633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.1	IKZF3	rs12943633-T	0.077893	7E-9		0.024941288	[0.016-0.033] unit increase	Affymetrix [93095623] (imputed)	N
874	chr17	37970364	37970365	rs12943633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.1		rs12943633-?	NR	5E-38				NR [~ 8900000] (imputed)	N
874	chr17	37970364	37970365	rs12943633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17q21.1	IKZF3	rs12943633-T	0.0787	7E-18		0.05770913	[0.045-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
874	chr17	37970364	37970365	rs12943633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q21.1	IKZF3	rs12943633-T	0.0788	2E-17		0.05674038	[0.044-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr17	37970364	37970365	rs12943633	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q21.1	IKZF3	rs12943633-T	0.0787	2E-19		0.06053829	[0.047-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr17	37972707	37972708	rs12450323	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	17q21.1	IKZF3	rs12450323-T		4E-7		1.16	[1.1-1.22]	Illumina [up to 4972397] (imputed)	N
874	chr17	37975218	37975218	rs71152606	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	17q21.1		rs71152606-CTTCTA	NR	8E-44		0.269698	[0.23-0.31] unit increase	NR [2787054] (imputed)	N
874	chr17	37975672	37975673	rs147065162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.1	IKZF3	rs147065162-C	0.00451800000000002	2E-10		0.11055072	[0.076-0.145] unit increase	Affymetrix [93095623] (imputed)	N
874	chr17	37976092	37976093	rs114211283	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs114211283-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
874	chr17	37976468	37976469	rs9303277	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	17q21.1	IKZF3	rs9303277-?	NR	2E-8		0.03377	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
874	chr17	37976468	37976469	rs9303277	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	17q21.1	IKZF3	rs9303277-T	0.308489304812834	8E-11		1.4342519	[1.286-1.599]	Affymetrix [425290]	N
874	chr17	37976468	37976469	rs9303277	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	17q21.1	IKZF3	rs9303277-T	0.5	3E-11		1.2345679	NR	Illumina [1143634] (imputed)	N
874	chr17	37976468	37976469	rs9303277	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	17q21.1	IKZF3	rs9303277-?	NR	7E-6	(ACA)	1.191	[NR]	Illumina [NR]	N
874	chr17	37976468	37976469	rs9303277	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	17q21.1	GSDMB, IKZF3, ZPBP2, ORMDL3	rs9303277-T	NR	4E-9		1.44	[1.28-1.63]	Affymetrix [421245]	N
874	chr17	37976468	37976469	rs9303277	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	17q21.1	GSDMB, IKZF3, ZPBP2, ORMDL3	rs9303277-T	0.51	2E-9		1.38	[NR]	Illumina [276459]	N
874	chr17	37978994	37978995	rs146459536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs146459536-?	NR	7E-34				Affymetrix [~ 8270000] (imputed)	N
874	chr17	37982882	37982883	rs2060941	30343302	Kim SH	2018-10-19	Gynecol Obstet Invest	High Genetic Risk Scores of ASIC2, MACROD2, CHRM3, and C2orf83 Genetic Variants Associated with Polycystic Ovary Syndrome Impair Insulin Sensitivity and Interact with Energy Intake in Korean Women.	Polycystic ovary syndrome	182 Korean ancestry cases, 240 Korean ancestry controls	NA	17q21.1	IKZF3	rs2060941-A	0.02708	5E-8		2.139	NR unit decrease	Affymetrix [NR]	N
874	chr17	37983491	37983492	rs12944882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	17q21.1		rs12944882-C	0.268117	5E-10		0.0312328	[0.021-0.041] unit decrease	Illumina [13471431] (imputed)	N
874	chr17	37985778	37985779	rs143669790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs143669790-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
874	chr17	37985778	37985779	rs143669790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.1		rs143669790-?	NR	3E-23				NR [~ 8900000] (imputed)	N
874	chr17	37985800	37985801	rs3816470	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	17q21.1	NR	rs3816470-A	0.722144	8E-10		0.033246	[0.023-0.044] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
874	chr17	37986074	37986075	rs192665233	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17q21.1		rs192665233-?	NR	5E-8				Affymetrix [NR] (imputed)	N
874	chr17	38004929	38004933	rs34233420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q21.1		rs34233420-G	NR	2E-38		0.0279	[0.024-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
874	chr17	38004929	38004933	rs34233420	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q21.1	IKZF3	rs34233420-G	0.48	1E-20		0.03351422	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
874	chr17	38006270	38006271	rs79411018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.1	NR	rs79411018-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
874	chr17	38006270	38006271	rs79411018	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs79411018-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
874	chr17	38006332	38006333	rs8071789	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	17q21.1	IKZF3, ORMDL3	rs8071789-T		7E-7		1.2345679	[NR]	Illumina [up to 9464381] (imputed)	N
874	chr17	38006767	38006776	rs202126107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.1	IKZF3	rs202126107-G	0.482319	3E-47		0.0319849	[0.028-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
874	chr17	38006767	38006776	rs202126107	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q21.1	IKZF3	rs202126107-G	0.481	1E-17		0.0305187	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
874	chr17	38007189	38007190	rs143123127	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	17q21.1	IKZF3	rs143123127-A		6E-9		1.51	[NR]	Illumina [> 644674] (imputed)	N
875	chr17	38019855	38019856	rs188353899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.1		rs188353899-?	NR	6E-8				NR [~ 8900000] (imputed)	N
875	chr17	38020140	38020141	rs9635726	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	17q21.1	ORMDL3	rs9635726-G	0.309	2E-16		1.37	[1.27-1.48]	Illumina [776516]	N
875	chr17	38023744	38023745	rs4795397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q21.1		rs4795397-A	0.518	4E-30				Affymetrix [10369434] (imputed)	N
875	chr17	38023744	38023745	rs4795397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.1	NR	rs4795397-G	0.440688	2E-61				Affymetrix, Illumina [23472807] (imputed)	N
875	chr17	38023744	38023745	rs4795397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q21.1	NR	rs4795397-G	0.478576	4E-57		0.03016	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
875	chr17	38023744	38023745	rs4795397	28461288	Yan Q	2017-05-01	Eur Respir J	A meta-analysis of genome-wide association studies of asthma in Puerto Ricans.	Asthma	1,666 Puerto Rican child cases, 478 Puerto Rican adult cases, 1,505 Puerto Rican child controls, 1,388 Puerto Rican adult controls	NA	17q21.1	ZPBP2, GSDMB, ORMDL3	rs4795397-A	0.64	4E-12				Affymetrix, Illumina [7485508] (imputed)	N
875	chr17	38023744	38023745	rs4795397	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q21.1	NR	rs4795397-?	NR	8E-44	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
875	chr17	38026168	38026169	rs11655198	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	17q21.1	ZPBP2	rs11655198-?	NR	1E-63		1.1806375	[1.16-1.2]	Illumina [13747813] (imputed)	N
875	chr17	38031163	38031164	rs11658278	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17q21.1	ZPBP2, GSDMB, ORMDL3	rs11658278-T	0.479	3E-11		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
875	chr17	38031163	38031164	rs11658278	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q21.1	ZPBP2	rs11658278-T	0.52	3E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 12149979] (imputed)	N
875	chr17	38031856	38031857	rs59716545	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	17q21.1		rs59716545-T	NR	3E-10		0.93	[0.91-0.95]	NR [13810676] (imputed)	N
875	chr17	38031856	38031857	rs59716545	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	17q21.1	IKZF3, CSF3	rs59716545-T	NR	3E-13		0.103667	[0.066-0.141] unit decrease	Illumina [8380626] (imputed)	N
875	chr17	38031856	38031857	rs59716545	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	17q21.1	IKZF3, CSF3	rs59716545-T	0.54	2E-9	(EA)	0.09246	[0.062-0.123] unit decrease	Illumina [8380626] (imputed)	N
875	chr17	38032187	38032188	rs12939457	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	17q21.1	GSDMB, ZPBP2	rs12939457-T	0.5594	2E-17		1.0638298	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
875	chr17	38032679	38032680	rs35736272	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q21.1	ZPBP2	rs35736272-?	NR	6E-30	(subset analysis)			Illumina [130052]	N
875	chr17	38033276	38033277	rs1054609	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	17q21.1	ZPBP2	rs1054609-C	0.463	9E-6		1.141461		Illumina [252970]	N
875	chr17	38033276	38033277	rs1054609	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	17q21.1	ZPBP2	rs1054609-C	0.46	6E-7		1.0844102		Illumina [252970]	N
875	chr17	38033276	38033277	rs1054609	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	17q21.1	ORMDL3	rs1054609-C	NA	4E-8				Illumina [252970]	N
875	chr17	38038390	38038391	rs62067029	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.1		rs62067029-T	0.40881	2E-8		0.1605	[0.1-0.22] unit decrease	Illumina [18238287] (imputed)	N
875	chr17	38038390	38038391	rs62067029	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.1		rs62067029-T	0.40881	3E-8		0.1593	[0.1-0.22] unit decrease	Illumina [18238287] (imputed)	N
875	chr17	38038390	38038391	rs62067029	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell Absolute Count	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.1		rs62067029-T	0.40883	5E-9		0.1669	[0.11-0.22] unit decrease	Illumina [18238316] (imputed)	N
875	chr17	38040118	38040119	rs12232497	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	17q21.1		rs12232497-C	0.48220300000000005	4E-17		1.036206	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
875	chr17	38040118	38040119	rs12232497	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	17q21.1	IKZF3	rs12232497-C	0.45	3E-7				Illumina [7347414] (imputed)	N
875	chr17	38040762	38040763	rs2872507	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	17q21.1	IKZF3, GSDMB, ORMDL3	rs2872507-A	0.47	3E-9				Illumina [129464] (imputed)	N
875	chr17	38040762	38040763	rs2872507	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	17q21.1	ORMDL3	rs2872507-A	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [NR]	N
875	chr17	38040762	38040763	rs2872507	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	17q21.1	GSDML, IKZF3, ZPBP2, ORMDL3, PNMT	rs2872507-A	0.46	5E-11		1.15	[1.10-1.19]	Affymetrix, Illumina [~ 1100000] (imputed)	N
875	chr17	38040762	38040763	rs2872507	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	17q21.1	IKZF3, GSMDL, ZPBP2, ORMDL3	rs2872507-A	0.458	2E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [953241] (imputed)	N
875	chr17	38040762	38040763	rs2872507	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	17q21.1	IKZF3	rs2872507-A	0.47	9E-7		1.1	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
875	chr17	38040762	38040763	rs2872507	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	17q21.1	ORMDL3	rs2872507-A	0.47	5E-9		1.12	[NR]	Affymetrix, Illumina [635547] (imputed)	N
875	chr17	38043342	38043343	rs9901146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	11,615 African American or Afro-Caribbean and African ancestry individuals	NA	17q21.1	NR	rs9901146-G	0.618121	3E-9		0.080604	[0.054-0.107] SD units increase	Affymetrix, Illumina [35935203] (imputed)	N
875	chr17	38043342	38043343	rs9901146	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	17q21.1	NR	rs9901146-G	0.51	8E-99		1.18		Affymetrix [10894596] (imputed)	N
875	chr17	38043342	38043343	rs9901146	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	17q21.1	NR	rs9901146-G	0.51	4E-57				Affymetrix [10894596] (imputed)	N
875	chr17	38043342	38043343	rs9901146	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	17q21.1	ZPBP2, GSDMB	rs9901146-G	0.51	2E-16		1.18	[1.13-1.22]	Illumina [2387926] (imputed)	N
875	chr17	38043648	38043649	rs12936409	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	17q21.1	IKZF3, GSDMB	rs12936409-A	0.47	1E-10		1.11	[1.07-1.14]	Illumina [133816] (imputed)	N
875	chr17	38043648	38043649	rs12936409	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	17q21.1	IKZF3, GSDMB, ORMDL3	rs12936409-A	NR	7E-7		1.1158		Illumina [129464] (imputed)	N
875	chr17	38043648	38043649	rs12936409	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	17q21.1	IKZF3, GSDMB, ORMDL3	rs12936409-A	NR	4E-7		1.1029		Illumina [129464] (imputed)	N
875	chr17	38045083	38045084	rs146767035	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs146767035-G	0.971	1E-15				Affymetrix [10369434] (imputed)	N
875	chr17	38048243	38048244	rs9906951	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.1	Intergenic	rs9906951-T	0.5097	2E-10	(MTAG)	0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
875	chr17	38049588	38049589	rs7359623	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.1	NR	rs7359623-C	0.4857	2E-16		1.05	[1.038-1.062]	Affymetrix [15688218] (imputed)	N
875	chr17	38050905	38050906	rs143199092	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs143199092-G	0.974	4E-14				Affymetrix [10369434] (imputed)	N
875	chr17	38051347	38051348	rs8067378	30412241	Takeuchi F	2018-11-09	Hum Mol Genet	Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection.	Cervical cancer	2,609 East Asian ancestry cases, 4,712 East Asian ancestry controls	1,461 Han Chinese ancestry cases, 3,295 Han Chinese ancestry controls	17q21.1		rs8067378-G	0.28	3E-6		1.22	[NR]	Affymetrix, Illumina [4602429] (imputed)	N
875	chr17	38051347	38051348	rs8067378	23817570	Shi Y	2013-06-30	Nat Genet	A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.	Cervical cancer	Up to 1,364 Han Chinese ancestry cases, up to 3,028 Han Chinese ancestry controls	4,167 Han Chinese ancestry cases, 7,196 Han Chinese ancestry controls	17q21.1	GSDMB	rs8067378-G	0.22	9E-10	(Matched)	1.19	[1.13-1.26]	Affymetrix [563339]	N
875	chr17	38051347	38051348	rs8067378	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	17q21.1	ORMDL3, ZPBP2, GSDMB, IKZF3	rs8067378-G	0.52	6E-14		1.26	[1.19-1.34]	Illumina [237619] (imputed)	N
875	chr17	38053206	38053207	rs12453507	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	17q21.1	IKZF3, ORMDL3, GSDMB	rs12453507-G	0.51	1E-8		1.1111112		Illumina [135870]	N
875	chr17	38053888	38053889	rs2123685	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Subcutaneous adipose tissue	7,399 European ancestry women, 2,163 African American women	NA	17q21.1	GSDMB, ZPBP2	rs2123685-T	0.94	3E-8	(EA)	5.52	z-score increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
875	chr17	38056115	38056116	rs11651596	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs11651596-?	NR	2E-124				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38056115	38056116	rs11651596	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	17q21.1	GSDMB	rs11651596-C	0.4839	2E-14		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
875	chr17	38057196	38057197	rs8069176	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.1	NR	rs8069176-?	NR	3E-29				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38057196	38057197	rs8069176	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	17q21.1	ZPBP2, GSDMB	rs8069176-G	NR	4E-26		1.25	[1.2-1.3]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
875	chr17	38057196	38057197	rs8069176	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q21.1	GSDMB, ZPBP2	rs8069176-A	0.45	5E-6	(EA)	0.066	[0.039-0.093] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
875	chr17	38057196	38057197	rs8069176	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	17q21.1	GSDMB, ZPBP2	rs8069176-A	0.43	2E-8		0.066	[0.042-0.09] unit decrease	Affymetrix, Illumina [2253077] (imputed)	N
875	chr17	38061438	38061439	rs4795399	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	17q21.1	GSDMB, ZPBP2, ORMDL3	rs4795399-T	0.529	1E-111		1.406	[1.365-1.448]	Affymetrix [10894596] (imputed)	N
875	chr17	38061438	38061439	rs4795399	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	17q21.1	GSDMB, ZPBP2, ORMDL3	rs4795399-T	0.529	7E-65		2.286	[2.02-2.55] unit decrease	Affymetrix [10894596] (imputed)	N
875	chr17	38061438	38061439	rs4795399	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	17q21.1	GSDMB	rs4795399-T	0.528	5E-64		1.257	[1.24-1.28]	Affymetrix [9000000] (imputed)	N
875	chr17	38061438	38061439	rs4795399	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.1	GSDMB	rs4795399-?	NR	1E-257		1.289	[1.28-1.3]	Affymetrix [9000000] (imputed)	N
875	chr17	38061438	38061439	rs4795399	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.1	GSDMB	rs4795399-T	NR	1E-45		1.101	[1.09-1.11]	Affymetrix [9000000] (imputed)	N
875	chr17	38062195	38062196	rs2305480	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	17q21.1	GSDMB	rs2305480-G	0.6	6E-23		1.32	[1.23-1.39]	Affymetrix, Illumina [124514]	N
875	chr17	38062195	38062196	rs2305480	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	17q21.1	IKZF3	rs2305480-?	NR	4E-9				Illumina [129464] (imputed)	N
875	chr17	38062195	38062196	rs2305480	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	17q21.1	GSDMB	rs2305480-G	0.55	1E-7		1.18	[1.11-1.23]	Illumina [582892]	N
875	chr17	38062195	38062196	rs2305480	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	17q21.1	GSDML, ORMDL3, STAC2, FBXL20, MED1, CRKRS, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, IKZF3, ZPBP2, NEUROD2	rs2305480-T	NR	3E-8		1.25	[NR]	Illumina [266047]	N
875	chr17	38062216	38062217	rs2305479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	17q21.1		rs2305479-T	NR	2E-21		0.0788	[0.063-0.095] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
875	chr17	38062216	38062217	rs2305479	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q21.1	GSDMB	rs2305479-C	0.5	8E-112				NR [> 9500000] (imputed)	N
875	chr17	38062216	38062217	rs2305479	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q21.1	GSDMB	rs2305479-C	0.503575	3E-69		1.1115996	1.09857261213927-1.12478100946316]	NR [9572556] (imputed)	N
875	chr17	38062216	38062217	rs2305479	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.1	GSDMB	rs2305479-C	0.489	2E-48				Affymetrix [15688218] (imputed)	N
875	chr17	38062216	38062217	rs2305479	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	17q21.1	GSDMB, ZBP2, ORMDL3	rs2305479-T	0.51	3E-24		0.23	[0.19-0.27] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
875	chr17	38062502	38062503	rs35104165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.1	NR	rs35104165-C	NR	1E-12		0.0453	[0.033-0.058] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38062502	38062503	rs35104165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.1	NR	rs35104165-C	NR	3E-27		0.0692	[0.057-0.082] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38062502	38062503	rs35104165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q21.1	NR	rs35104165-C	NR	3E-12		0.0427	[0.031-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
875	chr17	38062502	38062503	rs35104165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q21.1	NR	rs35104165-C	NR	1E-13		0.0453	[0.033-0.057] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38063380	38063381	rs883770	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	17q21.1	IKZF3, GSDMB	rs883770-T	0.5	5E-9		1.13		Illumina [4723365]	N
875	chr17	38063737	38063738	rs62067034	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	17q21.1	GSDMB	rs62067034-?	NR	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
875	chr17	38063737	38063738	rs62067034	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	17q21.1	GSDMB	rs62067034-?	NR	3E-6		0.171	[0.098-0.244] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
875	chr17	38064404	38064405	rs11078927	28461288	Yan Q	2017-05-01	Eur Respir J	A meta-analysis of genome-wide association studies of asthma in Puerto Ricans.	Asthma	1,666 Puerto Rican child cases, 478 Puerto Rican adult cases, 1,505 Puerto Rican child controls, 1,388 Puerto Rican adult controls	NA	17q21.1	GSDMB	rs11078927-C	0.57	1E-12	(Children)	1.52		Affymetrix, Illumina [7485508] (imputed)	N
875	chr17	38064404	38064405	rs11078927	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	17q21.1	GSDMB	rs11078927-?	NR	2E-16				Affymetrix, Illumina [> 2000000] (imputed)	N
875	chr17	38064970	38064971	rs117097909	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	17q21.1	GSDMB	rs117097909-A	0.051	8E-19		1.218	[1.17-1.26]	Affymetrix [9000000] (imputed)	N
875	chr17	38064970	38064971	rs117097909	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.1	GSDMB	rs117097909-?	NR	2E-51		1.292	[1.26-1.33]	Affymetrix [9000000] (imputed)	N
875	chr17	38064970	38064971	rs117097909	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.1	GSDMB	rs117097909-A	NR	2E-17		1.135	[1.11-1.16]	Affymetrix [9000000] (imputed)	N
875	chr17	38066239	38066240	rs2290400	29348612	Wiemels JL	2018-01-18	Nat Commun	GWAS in childhood acute lymphoblastic leukemia reveals novel genetic associations at chromosomes 17q12 and 8q24.21.	Acute lymphoblastic leukemia (childhood)	1,949 Latino cases, 8,584 Latino controls, 1,184 European ancestry cases, 3551 European ancestry controls, 130 African American cases, 3,842 African American controls	959 European ancestry cases,  2,624 European ancestry controls, 530 Latino cases, 511 Latino controls	17q21.1	IKZF3	rs2290400-T	NR	1E-9		1.17	[1.11-1.23]	Affymetrix [757935]	N
875	chr17	38066239	38066240	rs2290400	27439200	Nieuwenhuis MA	2016-07-20	Allergy	Combining genomewide association study and lung eQTL analysis provides evidence for novel genes associated with asthma.	Bronchial hyperresponsiveness in asthma	920 Dutch ancestry cases, 980 Dutch ancestry controls	2,589 European ancestry cases, 473 cases, 6,702 European ancestry controls, 1,892 controls	17q21.1	GSDMA, GSDMB, CRKRS, ORMDL3, PERLD1, IKZF3, PNMT	rs2290400-C	NR	3E-20		1.34	[NR]	Illumina [294932]	N
875	chr17	38066239	38066240	rs2290400	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	17q21.1	ORMDL3	rs2290400-?	0.50	6E-13		1.15	[1.08-1.22]	Affymetrix, Illumina [841622] (imputed)	N
875	chr17	38066266	38066267	rs1008723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	17q21.1		rs1008723-T	NR	9E-9		0.0544	[0.036-0.073] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
875	chr17	38066266	38066267	rs1008723	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q21.1	GSDMB, ORMDL3, LRRC3C, ZPBP2, IKZF3, GSDMA	rs1008723-G	0.48901	1E-65		1.1136974	[1.1-1.12]	Affymetrix [32463443] (imputed)	N
875	chr17	38066266	38066267	rs1008723	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.1	MIR4728, CDK12, CSF3, ERBB2, GRB7, GSDMA, GSDMB, IKZF3, LRRC3C, MED1, MED24, MIEN1, MIR6884, MSL1, NEUROD2, NR1D1, ORMDL3, PGAP3, PNMT, PPP1R1B, PSMD3, SNORD124, STARD3, TCAP, THRA, ZPBP2	rs1008723-G	0.488661	2E-62		1.1076171	[1.1-1.12]	Affymetrix [8274727] (imputed)	N
875	chr17	38066266	38066267	rs1008723	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Dermatomyositis or juvenile dermatomyositis	879 European dermatomyositis cases, 15,651 European juvenile dermatomyositis ancestry controls		17q21.1	GSDMB	rs1008723-T		9E-6		1.2	[1.11-1.30]	Illumina [90536]	N
875	chr17	38066371	38066372	rs56380902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs56380902-?	NR	6E-39				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38066371	38066372	rs56380902	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	17q21.1	IKZF3, ORMDL3, GSDMB	rs56380902-C	0.44	1E-8		1.35	[1.22-1.50]	Illumina [114874]	N
875	chr17	38066508	38066509	rs7213668	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.1	GSDMB	rs7213668-?		4E-8		0.0242	[0.016-0.033] unit decrease	Illumina [31500000] (imputed)	N
875	chr17	38067019	38067020	rs4795400	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	17q21.1	GSDMB	rs4795400-C	0.541	7E-34		0.051	[0.043-0.059] unit decrease	NR [NR] (imputed)	N
875	chr17	38067019	38067020	rs4795400	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	17q21.1	GSDMB	rs4795400-C	0.541	6E-33		0.05	[0.042-0.058] unit decrease	NR [7647814] (imputed)	N
875	chr17	38067019	38067020	rs4795400	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	17q21.1	GSDMB	rs4795400-?	NR	3E-15		1.0626993	[1.05-1.08]	Illumina [12845910] (imputed)	N
875	chr17	38067532	38067533	rs4795401	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q21.1	GSDMB	rs4795401-G	0.510614794713003	1E-55		0.1025535	[0.09-0.115] unit decrease	Affymetrix [35186738] (imputed)	N
875	chr17	38068042	38068043	rs869402	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	17q21.1	ERBB2, GRB7, GSDMA, GSDMB, IKZF3, LRRC3C, MIEN1, MIR4728, ORMDL3, PGAP3, PNMT, STARD3, TCAP, ZPBP2	rs869402-?	NR	4E-17		1.12		NR [74888535] (imputed)	N
875	chr17	38068042	38068043	rs869402	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	17q21.1	GSDMA	rs869402-?	NR	7E-18		0.111541	[0.086-0.137] unit increase	Affymetrix [74888535] (imputed)	N
875	chr17	38068381	38068382	rs870829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.1		rs870829-A	0.406	9E-21				Affymetrix [10369434] (imputed)	N
875	chr17	38068381	38068382	rs870829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs870829-A	0.406	1E-70				Affymetrix [10369434] (imputed)	N
875	chr17	38068381	38068382	rs870829	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q21.1		rs870829-A	0.406	5E-36				Affymetrix [10369434] (imputed)	N
875	chr17	38068381	38068382	rs870829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q21.1	NR	rs870829-C	NR	6E-16		0.0197	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38068381	38068382	rs870829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.1	NR	rs870829-C	NR	4E-16		0.0207	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
875	chr17	38068381	38068382	rs870829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q21.1	NR	rs870829-C	NR	3E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38068513	38068514	rs1011082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	17q21.1		rs1011082-C	NR	1E-21		0.088	[0.07-0.106] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
875	chr17	38068513	38068514	rs1011082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	17q21.1		rs1011082-C	NR	1E-11		0.0599	[0.042-0.077] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
875	chr17	38068513	38068514	rs1011082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	17q21.1		rs1011082-C	NR	5E-31		0.0823	[0.068-0.096] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
875	chr17	38068513	38068514	rs1011082	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	17q21.1	GSDMB	rs1011082-C	0.483207	3E-11		0.07408	[0.052-0.096] unit increase	Affymetrix [7288503] (imputed)	N
875	chr17	38068513	38068514	rs1011082	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	17q21.1	GSDMB	rs1011082-C	0.485127	7E-20		0.082203284	[0.065-0.1] unit increase	Affymetrix [7288503] (imputed)	N
875	chr17	38069075	38069076	rs921650	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	17q21.1	NR	rs921650-G	0.507	2E-28		0.046	[0.038-0.054] unit increase	NR [7647814] (imputed)	N
875	chr17	38069075	38069076	rs921650	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.1	GSDMB	rs921650-A	0.48	6E-30		1.059	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
875	chr17	38069075	38069076	rs921650	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q21.1	GSDMB	rs921650-A	0.4829	2E-31		0.04151507	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr17	38069948	38069949	rs7216389	17611496	Moffatt MF	2007-07-26	Nature	Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma.	Asthma	994 European ancestry cases, 1,243 European ancestry controls	200 European ancestry cases, 2,120 European ancestry controls	17q21.1	ORMDL3	rs7216389-T	0.52	9E-11		1.45	[1.17-1.81]	Illumina [307328]	N
875	chr17	38071086	38071086	rs150597688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.1	GSDMB	rs150597688-CTT	0.497645	2E-16		0.02043833	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
875	chr17	38072401	38072402	rs8065777	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.1	Intergenic	rs8065777-T	0.5036	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
875	chr17	38072726	38072727	rs2872516	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17q21.1		rs2872516-C	0.462	5E-27				Affymetrix [10369434] (imputed)	N
875	chr17	38073842	38073843	rs201413617	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.1	GSDMB	rs201413617-C	NR	2E-7		1.134	[1.09-1.18]	Affymetrix [9000000] (imputed)	N
875	chr17	38073967	38073968	rs9303279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.1		rs9303279-?	NR	3E-57				NR [~ 8900000] (imputed)	N
875	chr17	38074030	38074031	rs9303280	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	17q21.1	GSDMB, IKZF3	rs9303280-T	0.4805	9E-9		0.0687	[0.045-0.092] unit decrease	Illumina [2400000] (imputed)	N
875	chr17	38074517	38074518	rs7219923	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	17q21.1	GSDMB	rs7219923-T	NR	2E-68		1.65	[1.56-1.75]	Illumina [up to 525976] (imputed)	N
875	chr17	38075425	38075426	rs7224129	34022066	Kim KW	2021-05-22	Allergy	Genome-wide association study identifies TNFSF15associated with childhood asthma.	Asthma (childhood onset)	741 Korean ancestry cases, 1,140 Korean ancestry controls	NA	17q21.1	GSDMB	rs7224129-?	NR	4E-9		1.904	[1.535-2.36]	Affymetrix, Illumina [4559629] (imputed)	N
875	chr17	38077749	38077750	rs78199107	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	26,063 European ancestry men	NA	17q21.1	ORMDL3	rs78199107-T	NR	1E-7		2.39955	[1.52-3.28] unit decrease	NR [9955952] (imputed)	N
875	chr17	38080864	38080865	rs4065275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q21.1		rs4065275-G	NR	3E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
875	chr17	38080911	38080912	rs8076131	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	17q21.1	NR	rs8076131-A	0.326	3E-10	(Latino)	1.45	[1.29-1.63]	Affymetrix [9737707] (imputed)	N
875	chr17	38081393	38081394	rs111935829	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs111935829-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38085384	38085385	rs4795402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.1	NR	rs4795402-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38085384	38085385	rs4795402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs4795402-?	NR	6E-30				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38085721	38085722	rs4795403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.1	NR	rs4795403-C	NR	3E-9		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38085721	38085722	rs4795403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.1	NR	rs4795403-C	NR	3E-10		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
875	chr17	38089343	38089344	rs4794820	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	17q21.1	NR	rs4794820-G	0.55	1E-7		1.0867556	[NR]	NR [9372253] (imputed)	N
875	chr17	38089343	38089344	rs4794820	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	17q21.1	ORMDL3	rs4794820-?	NR	1E-8		1.33	[1.20-1.45]	Illumina [6103628] (imputed)	N
875	chr17	38095173	38095174	rs6503525	21150878	Ferreira MA	2010-12-08	Eur J Hum Genet	Association between ORMDL3, IL1RL1 and a deletion on chromosome 17q21 with asthma risk in Australia.	Asthma	986 European ancestry cases, 1,846 European ancestry controls	391 European ancestry cases, 213 European ancestry controls	17q21.1	ORMDL3	rs6503525-C	0.43	5E-7		1.33	[NR]	Illumina [~ 2380000] (imputed)	N
875	chr17	38101931	38101932	rs4065985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	17q21.1		rs4065985-C	NR	1E-8		0.1092	[0.071-0.147] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
875	chr17	38103439	38103440	rs72832969	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17q21.1		rs72832969-?	NR	5E-8				Affymetrix [NR] (imputed)	N
875	chr17	38104567	38104568	rs150597587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs150597587-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38110688	38110689	rs17609240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs17609240-?	NR	2E-6		0.01280395	[0.0075-0.0181] unit increase	Illumina [30613845] (imputed)	N
875	chr17	38110688	38110689	rs17609240	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	17q21.1	GSDMA, ORMDL3	rs17609240-G	NR	9E-9	(WBC)	0.02	[0.01-0.03] 10^9/l increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
875	chr17	38114046	38114046	rs11399056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.1		rs11399056-GA	0.598222	2E-16		0.021948954	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr17	38114976	38114977	rs3931960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.1	NR	rs3931960-C	0.54133	7E-364				Affymetrix, Illumina [23114412] (imputed)	N
875	chr17	38119253	38119254	rs3902025	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	17q21.1	GSDM1	rs3902025-C	0.4405	2E-6	(ACA positive)	1.1908		Illumina [126270]	N
875	chr17	38119253	38119254	rs3902025	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Limited cutaneous systemic scleroderma	1,127 European ancestry cases, 3,466 European ancestry controls	2,507 European ancestry cases, 5,935 European ancestry controls	17q21.1	GSDM1	rs3902025-C	0.4405	2E-6		1.1484		Illumina [126270]	N
875	chr17	38120484	38120485	rs79208875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.1	GSDMA	rs79208875-T	0.061979	6E-9		0.028546326	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr17	38121992	38121993	rs3894194	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	17q21.1	LRRC3C, ORMDL3, GSDMB, GSDMA	rs3894194-A	NR	1E-10		0.166	[0.12-0.22] unit decrease	Illumina [3610917] (imputed)	N
875	chr17	38121992	38121993	rs3894194	24241537	Bonnelykke K	2013-11-17	Nat Genet	A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.	Asthma (childhood onset)	1,173 European ancestry cases, 2,511 European ancestry controls	395 European ancestry cases, 2,663 European ancestry controls, 63 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry cases, 917 Turkish, Surinamese, Dutch Antillean, Moroccan, Cape Verdian and other ancestry controls, 6,783 cases, 7,720 controls	17q21.1	GSDMA	rs3894194-A	NR	3E-21		1.59	[1.44-1.76]	Affymetrix, Illumina [124514]	N
875	chr17	38121992	38121993	rs3894194	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	17q21.1	GSDMA	rs3894194-A	0.45	5E-9		1.17	[1.11-1.23]	Illumina [582892]	N
875	chr17	38122679	38122680	rs7212938	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	17q21.1	GSDMA	rs7212938-G	0.46	4E-10		1.16	[1.11-1.20]	Illumina [up to 4972397] (imputed)	N
875	chr17	38122881	38122882	rs11871317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs11871317-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38124629	38124630	rs60725845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.1	NR	rs60725845-G	0.478787	2E-397				Affymetrix, Illumina [24649327] (imputed)	N
875	chr17	38124891	38124892	rs59843584	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs59843584-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38125345	38125346	rs3894193	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T/B cell	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.1		rs3894193-G	0.467	2E-8		0.1467	[0.096-0.198] unit decrease	Illumina [18427377] (imputed)	N
875	chr17	38126230	38126231	rs59269632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q21.1		rs59269632-A	0.539	5E-19				Affymetrix [10369434] (imputed)	N
875	chr17	38126394	38126395	rs55757004	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17q21.1	NR	rs55757004-T	0.08748	8E-13		0.0317548	[0.023-0.04] unit decrease	Affymetrix [3505788] (imputed)	N
875	chr17	38126476	38126477	rs4580194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.1		rs4580194-?	NR	1E-300				NR [~ 8900000] (imputed)	N
875	chr17	38126476	38126477	rs4580194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.1		rs4580194-?	NR	5E-14				NR [~ 8900000] (imputed)	N
875	chr17	38128600	38128601	rs72832993	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.1	GSDMA	rs72832993-C	0.922698	9E-20		0.00397507	[0.0031-0.0048] unit decrease	Affymetrix [13995440] (imputed)	N
875	chr17	38128647	38128648	rs3859192	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs3859192-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38128647	38128648	rs3859192	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs3859192-?	NR	8E-21		0.02329535	[0.018-0.028] unit increase	Illumina [30613845] (imputed)	N
875	chr17	38128647	38128648	rs3859192	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	17q21.1	GSDMA	rs3859192-T	0.48	2E-13		1.16	[1.12-1.21]	Illumina [2387926] (imputed)	N
875	chr17	38128647	38128648	rs3859192	22037903	Crosslin DR	2011-10-30	Hum Genet	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	12,046 European ancestry individuals, 1,487 African ancestry individuals	NA	17q21.1	GSDMA, PSMD3, MED24	rs3859192-A	0.47	2E-12	(EA)	0.14	[0.10-0.18] K/ul increase	Illumina [532566]	N
875	chr17	38128713	38128714	rs3859191	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	17q21.1		rs3859191-A	NR	1E-11		0.063552	[0.045-0.082] unit increase	Affymetrix [87696910] (imputed)	N
875	chr17	38128764	38128765	rs8077456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.1	NR	rs8077456-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38128764	38128765	rs8077456	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.1	NR	rs8077456-?	NR	4E-6		0.0080599	[0.0046-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
875	chr17	38129840	38129841	rs11870683	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	17q21.1	ERBB2	rs11870683-T	0.65	3E-8		1.05897	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
875	chr17	38130491	38130492	rs62066853	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.1	NR	rs62066853-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38130491	38130492	rs62066853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.1		rs62066853-?	NR	8E-12				NR [~ 8900000] (imputed)	N
875	chr17	38131186	38131187	rs56030650	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	17q21.1		rs56030650-A	NR	2E-11		0.0631482	[0.045-0.082] unit increase	Affymetrix [87696910] (imputed)	N
875	chr17	38134888	38134889	rs3907022	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q21.1	NR	rs3907022-C	0.470792	1E-605		0.097003	[0.093-0.101] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
875	chr17	38137363	38137364	rs3087852	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	17q21.1		rs3087852-A	0.46	8E-33		0.0949	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
875	chr17	38140273	38140274	rs141908043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs141908043-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
875	chr17	38140926	38140927	rs2305482	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	17q21.1		rs2305482-A	0.46	6E-15		0.0652	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
875	chr17	38140926	38140927	rs2305482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	8,165 South Asian ancestry individuals	NA	17q21.1	NR	rs2305482-A	0.441939	6E-13		0.114278	[0.083-0.145] SD units increase	Affymetrix, Illumina [28471362] (imputed)	N
875	chr17	38140926	38140927	rs2305482	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.1	CSF3, GSDMA, MED24, MIR6884, PSMD3, SNORD124	rs2305482-A	0.4574	6E-13		1.0450691	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
876	chr17	38142676	38142677	rs3816472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.1	PSMD3	rs3816472-C	0.539267	2E-118		0.06279266	[0.057-0.068] unit increase	Affymetrix [93095623] (imputed)	N
876	chr17	38142689	38142690	rs75049293	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs75049293-T	0.986	1E-10				Affymetrix [10369434] (imputed)	N
876	chr17	38143547	38143548	rs4065321	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.1		rs4065321-C	0.461	2E-111				Affymetrix [10369434] (imputed)	N
876	chr17	38143547	38143548	rs4065321	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs4065321-?	NR	4E-21		0.02314775	[0.018-0.028] unit decrease	Illumina [30613845] (imputed)	N
876	chr17	38143547	38143548	rs4065321	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	17q21.1	PSMD3	rs4065321-T	0.5363	2E-47		0.05072893	[0.044-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38143547	38143548	rs4065321	22037903	Crosslin DR	2011-10-30	Hum Genet	Genetic variants associated with the white blood cell count in 13,923 subjects in the eMERGE Network.	White blood cell count	12,046 European ancestry individuals, 1,487 African ancestry individuals	NA	17q21.1	GSDMA, PSMD3, MED24	rs4065321-G	0.44	1E-12		0.14	[0.10-0.18] K/ul increase	Illumina [532566]	N
876	chr17	38143547	38143548	rs4065321	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	White blood cell count	14,677 Japanese ancestry individuals	NA	17q21.1	CSF3, PSMD3, MED24, GSDMA	rs4065321-T	0.32	3E-14		0.094	[0.070-0.118] unit decrease	Illumina [561583]	N
876	chr17	38144078	38144079	rs118009374	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs118009374-G	0.961	2E-20				Affymetrix [10369434] (imputed)	N
876	chr17	38144078	38144079	rs118009374	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q21.1		rs118009374-G	0.961	1E-9				Affymetrix [10369434] (imputed)	N
876	chr17	38144186	38144187	rs12453764	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q21.1		rs12453764-T	0.461	4E-14				Affymetrix [10369434] (imputed)	N
876	chr17	38144228	38144229	rs12450688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	7,542 Hispanic or Latin American individuals	NA	17q21.1	NR	rs12450688-G	0.436178	7E-10		0.103073	[0.07-0.136] SD units increase	Affymetrix, Illumina [25652697] (imputed)	N
876	chr17	38144228	38144229	rs12450688	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs12450688-?	NR	8E-21		0.02297574	[0.018-0.028] unit decrease	Illumina [30613845] (imputed)	N
876	chr17	38144228	38144229	rs12450688	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q21.1	PSMD3	rs12450688-A	0.5363	2E-14		0.02740322	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38145827	38145828	rs57968500	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	17q21.1		rs57968500-G	NR	2E-12		0.0681717	[0.049-0.087] unit increase	Affymetrix [87696910] (imputed)	N
876	chr17	38146928	38146929	rs8066582	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	5,461 European ancestry mothers	NA	17q21.1	MED24, PSMD3	rs8066582-C	NR	7E-7		0.085	[0.052-0.118] unit increase	Illumina [7360988] (imputed)	N
876	chr17	38149032	38149033	rs11652139	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.1	PSMD3	rs11652139-A	0.59	8E-22		1.051	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
876	chr17	38149235	38149236	rs11658328	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17q21.1		rs11658328-T	0.46	2E-11				Affymetrix [10369434] (imputed)	N
876	chr17	38149723	38149724	rs3785549	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		17q21.1	PSMD3	rs3785549-T	NR	1E-8		0.00874	[0.0047-0.0128] nmol/l decrease	NR [19000000] (imputed)	N
876	chr17	38149723	38149724	rs3785549	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.1	PSMD3	rs3785549-C	0.5376	2E-108		0.07923921	[0.072-0.086] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38150491	38150492	rs3826331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q21.1		rs3826331-C	NR	5E-489		0.1016	[0.097-0.106] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
876	chr17	38150491	38150492	rs3826331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	17q21.1	NR	rs3826331-T	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38150491	38150492	rs3826331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.1	NR	rs3826331-T	NR	3E-6				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38150945	38150946	rs4795413	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs4795413-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38154594	38154595	rs8081692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	8,188 South Asian ancestry individuals	NA	17q21.1	NR	rs8081692-A	0.71338	1E-11		0.116412	[0.083-0.15] SD units decrease	Affymetrix, Illumina [28492541] (imputed)	N
876	chr17	38154594	38154595	rs8081692	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Neutrophil count	5,901 Dutch ancestry individuals	2,538 individuals	17q21.1	PSMD3	rs8081692-?	0.37	2E-10		0.157	[0.11-0.20] unit increase	Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
876	chr17	38156711	38156712	rs4794822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	17q21.1		rs4794822-T	0.517399	1E-73		0.0839675	[0.075-0.093] unit increase	Illumina [13467171] (imputed)	N
876	chr17	38156711	38156712	rs4794822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	17q21.1	NR	rs4794822-C	0.481667	3E-76		0.092986	[0.083-0.103] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
876	chr17	38156711	38156712	rs4794822	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	17q21.1	NR	rs4794822-T	NR	3E-9	(African)	0.064	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
876	chr17	38156711	38156712	rs4794822	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs4794822-?	NR	1E-22		0.02524787	[0.02-0.03] unit increase	Illumina [30613845] (imputed)	N
876	chr17	38156711	38156712	rs4794822	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	17q21.1	NR	rs4794822-T	0.67	4E-10		0.025	[0.017-0.033] unit increase	Illumina [27887661] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	17q21.1	PSMD3	rs4794822-C	0.586	3E-23	(EA)	0.028	[0.022-0.034] unit decrease	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	17q21.1	PSMD3	rs4794822-C	0.481	3E-12	(Japanese)	0.019	[0.013-0.025] unit decrease	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	17q21.1	PSMD3	rs4794822-?	NR	3E-19		0.0158	[0.012-0.019] unit increase	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	17q21.1	PSMD3	rs4794822-C	0.586	4E-23	(EA)	0.043	[0.035-0.051] unit decrease	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	17q21.1	PSMD3	rs4794822-C	0.481	7E-11	(Japanese)	0.032	[0.022-0.042] unit decrease	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	17q21.1	PSMD3	rs4794822-?	NR	9E-25		0.0312	[0.025-0.037] unit increase	Illumina [NR] (imputed)	N
876	chr17	38156711	38156712	rs4794822	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	17q21.1	CSF3, GSDMB, PSMD3, GSDM1, MED24, GSDMA, SNORD124, THRA, NR1D1, ORMDL3	rs4794822-T		9E-35	(WBC)	0.0218	[0.018-0.025] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
876	chr17	38156711	38156712	rs4794822	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	17q21.1	CSF3, PSMD3	rs4794822-T	0.52	4E-16	(neutrophil count)	0.093	[0.07-0.11] unit increase	Illumina [2178645] (imputed)	N
876	chr17	38156711	38156712	rs4794822	20172861	Okada Y	2010-02-18	Hum Mol Genet	Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count.	Neutrophil count	5,771 Japanese ancestry individuals	1,894 Japanese ancestry individuals	17q21.1	CSF3, PSMD3	rs4794822-C	0.48	6E-10		0.1	[0.07-0.13] unit decrease	Illumina [486091]	N
876	chr17	38157840	38157841	rs35272691	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (neutrophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	17q21.1	PSMD3, CSF3	rs35272691-T	0.593	5E-11		0.0297	[0.021-0.039] unit increase	Illumina [27887661] (imputed)	N
876	chr17	38157994	38157995	rs4795415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q21.1		rs4795415-T	NR	3E-395		0.0841	[0.08-0.088] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
876	chr17	38158132	38158133	rs4795416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	9,368 Hispanic or Latin American individuals	NA	17q21.1	NR	rs4795416-C	0.656847	6E-11		0.101809	[0.071-0.132] SD units decrease	Affymetrix, Illumina [26925380] (imputed)	N
876	chr17	38159093	38159094	rs149418433	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-1-receptor antagonist levels	21,758 European ancestry individuals	9,173 individuals	17q21.1		rs149418433-A	0.38	9E-9		0.0572	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
876	chr17	38159093	38159094	rs149418433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.1	PSMD3	rs149418433-A	0.388235	3E-82		0.051486015	[0.046-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38159334	38159335	rs12941811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	17q21.1		rs12941811-C	0.480044	9E-98		0.071275	[0.065-0.078] unit decrease	Illumina [13479091] (imputed)	N
876	chr17	38159334	38159335	rs12941811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q21.1		rs12941811-C	0.578458	4E-27		0.032218497	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38159334	38159335	rs12941811	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.1	NR	rs12941811-C	0.567521	8E-109				Affymetrix, Illumina [19905671] (imputed)	N
876	chr17	38159334	38159335	rs12941811	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	17q21.1	NR	rs12941811-C	0.578198	8E-111		0.046353	[0.042-0.05] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
876	chr17	38160753	38160754	rs8070454	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	17q21.1		rs8070454-T	NR	9E-13		0.0689106	[0.05-0.088] unit increase	Affymetrix [87696910] (imputed)	N
876	chr17	38160753	38160754	rs8070454	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals	NA	17q21.1	NR	rs8070454-T	0.3898	3E-18		0.0061	[0.0047-0.0075] unit increase	Affymetrix, Illumina [7568298] (imputed)	N
876	chr17	38162131	38162132	rs34213753	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	27,236 European ancestry individuals	NA	17q21.1		rs34213753-CT	0.4899	5E-9		0.053	[0.035-0.071] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
876	chr17	38162131	38162132	rs34213753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	17q21.1		rs34213753-C	0.491628	3E-10		0.014609286	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38163294	38163295	rs12600856	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs12600856-?	NR	8E-22		0.02476618	[0.02-0.03] unit increase	Illumina [30613845] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3904	8E-185		0.1061061	[0.099-0.113] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3903	6E-239		0.1208218	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3904	5E-243		0.1219381	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3903	2E-239		0.1208559	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3903	5E-227		0.1182055	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163294	38163295	rs12600856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.1	intergenic	rs12600856-C	0.3904	5E-242		0.1218023	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163566	38163567	rs12602172	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs12602172-A	0.3904	2E-132		0.08922115	[0.082-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163566	38163567	rs12602172	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs12602172-A	0.3903	2E-132		0.08929471	[0.082-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163609	38163609	rs142769246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.1	NR	rs142769246-C	0.831806	1E-13		0.00767491	[0.0056-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
876	chr17	38163609	38163609	rs142769246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.1	NR	rs142769246-C	0.831806	2E-10		0.00722871	[0.0048-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
876	chr17	38163649	38163650	rs8068260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	17q21.1	NR	rs8068260-T	0.484536	3E-95		0.075184	[0.068-0.082] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
876	chr17	38163902	38163903	rs34762051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.380834	4E-95		0.060496382	[0.055-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3767	1E-152		0.09804435	[0.091-0.105] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3768	3E-197		0.1116523	[0.1-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3768	4E-203		0.1134173	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3767	3E-111		0.08316302	[0.076-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3768	9E-200		0.1122641	[0.1-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3767	2E-101		0.07938988	[0.072-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163902	38163903	rs34762051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs34762051-C	0.3767	4E-200		0.1126706	[0.11-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38163935	38163936	rs8067817	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q21.1	LRRC3C, GSDMA, PSMD3, CSF3, MED24, SNORD124, THRA	rs8067817-T	0.557	6E-7		1.05781	[1.04-1.08]	NR [9372253] (imputed)	N
876	chr17	38164024	38164025	rs8072548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs8072548-?	NR	1E-11		0.01672138	[0.012-0.022] unit increase	Illumina [30613845] (imputed)	N
876	chr17	38164024	38164025	rs8072548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs8072548-G	0.5571	7E-27		0.03859392	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38164024	38164025	rs8072548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs8072548-G	0.5571	1E-29		0.04060338	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38164432	38164436	rs139156536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs139156536-T	0.5574	4E-74		0.06519099	[0.058-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38165297	38165298	rs55771023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs55771023-A	0.38778	8E-101		0.0622156	[0.056-0.068] unit increase	Affymetrix [93095623] (imputed)	N
876	chr17	38165297	38165298	rs55771023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs55771023-A	0.387811	2E-184		0.08359243	[0.078-0.089] unit increase	Affymetrix [93095623] (imputed)	N
876	chr17	38165297	38165298	rs55771023	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	17q21.1	PSMD3, CSF3	rs55771023-?	NR	9E-62		0.07021	[0.062-0.079] unit increase novel	Illumina [6108953] (imputed)	N
876	chr17	38165484	38165485	rs7221894	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs7221894-T	0.612	3E-228				Affymetrix [10369434] (imputed)	N
876	chr17	38165540	38165541	rs7222039	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17q21.1	NR	rs7222039-T	0.4467	3E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
876	chr17	38166002	38166003	rs4795419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs4795419-A	0.3905	5E-81		0.0693653	[0.062-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38166246	38166247	rs35690864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs35690864-G	0.563752	2E-52		0.04166545	[0.036-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38166412	38166412	rs528400393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs528400393-GT	0.373112	4E-16		0.024838906	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38166878	38166879	rs8078723	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_44:5_[M+OAc]1-/Phosphatidylcholine-P_44:4_[M+OAc]1- levels	13,814 British ancestry individuals	NA	17q21.1		rs8078723-C	NR	3E-12		0.0672363	[0.048-0.086] unit increase	Affymetrix [87696910] (imputed)	N
876	chr17	38166878	38166879	rs8078723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.1	CSF3	rs8078723-C	0.388377	8E-133		0.06979522	[0.064-0.075] unit increase	Affymetrix [93095623] (imputed)	N
876	chr17	38166878	38166879	rs8078723	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs8078723-?	NR	4E-22		0.02495182	[0.02-0.03] unit increase	Illumina [30613845] (imputed)	N
876	chr17	38166878	38166879	rs8078723	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (neutrophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	17q21.1	NR	rs8078723-T	0.67	8E-9		0.039	[0.025-0.053] unit decrease	Illumina [27887661] (imputed)	N
876	chr17	38166878	38166879	rs8078723	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	17q21.1	MED24, CSF3	rs8078723-C	0.626	3E-23	(EA)	0.043	[0.035-0.051] unit increase	Illumina [NR] (imputed)	N
876	chr17	38166878	38166879	rs8078723	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Neutrophil count	9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals	NA	17q21.1	CSF3, MED24	rs8078723-C	0.519	1E-10	(Japanese)	0.032	[0.022-0.042] unit increase	Illumina [NR] (imputed)	N
876	chr17	38166878	38166879	rs8078723	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	17q21.1	intergenic	rs8078723-C	0.468	3E-9	(WBC)	0.163	[NR] 10^3/ul increase	Affymetrix [1701735] (imputed)	N
876	chr17	38166878	38166879	rs8078723	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	17q21.1	CSF3, GSDMB, PSMD3, MED24, GSDMA, SNORD124, THRA, NR1D1, ORMDL3	rs8078723-T		2E-31	(Neutrophils)	0.0407	[0.034-0.048] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
876	chr17	38168129	38168129	rs397977902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	17q21.1		rs397977902-GT	NR	5E-21		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
876	chr17	38168714	38168715	rs7208815	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	17q21.1	PSMD3, CSF3	rs7208815-?	NR	3E-9		0.02485	[0.017-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
876	chr17	38168827	38168828	rs150260796	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs150260796-A	0.981	2E-20				Affymetrix [10369434] (imputed)	N
876	chr17	38168827	38168828	rs150260796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs150260796-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38168827	38168828	rs150260796	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.1	CASC3, CDC6, CSF3, GSDMA, MED24, MIR6866, MIR6867, MIR6884, MSL1, NR1D1, PSMD3, RAPGEFL1, RARA, RARA-AS1, SNORD124, THRA, WIPF2	rs150260796-G	0.018387	2E-12		1.1845239	[1.14-1.23]	Affymetrix [8274727] (imputed)	N
876	chr17	38169258	38169259	rs113903075	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	17q21.1	CSF3	rs113903075-T	0.0632	6E-8		0.14	NR SD units increase	Illumina [21568490] (imputed)	N
876	chr17	38169579	38169580	rs71355435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.1	RP11-387H17.6	rs71355435-T	0.394954	5E-21		0.021795552	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38169579	38169580	rs71355435	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q21.1	RP11-387H17.6	rs71355435-T	0.395	7E-10		0.02320048	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38170844	38170845	rs2227319	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q21.1		rs2227319-G	0.626	2E-18				Affymetrix [10369434] (imputed)	N
876	chr17	38171667	38171668	rs2227322	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	21,347 Hispanic or Latin American individuals	NA	17q21.1		rs2227322-C	0.3338	3E-15		0.0968	[0.073-0.121] unit increase	Affymetrix, Illumina [NR] (imputed)	N
876	chr17	38172819	38172820	rs142286142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.1	CSF3	rs142286142-C	0.00165300000000002	1E-18		0.23989442	[0.19-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38173142	38173143	rs25645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q21.1		rs25645-A	NR	2E-13		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
876	chr17	38173142	38173143	rs25645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.1	NR	rs25645-A	0.374011	8E-663		0.109597	[0.11-0.11] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
876	chr17	38173142	38173143	rs25645	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	17q21.1	NR	rs25645-?	NR	8E-20		0.02506563	[0.02-0.03] unit decrease	Illumina [30613845] (imputed)	N
876	chr17	38173142	38173143	rs25645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.1	CSF3	rs25645-A	0.3716	6E-191		0.110038	[0.1-0.12] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.1	CSF3	rs146890554-T	0.013927	1E-18		0.08616718	[0.067-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38173636	38173637	rs146890554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.1	CSF3	rs146890554-T	0.0139280000000001	8E-21		0.0915488	[0.072-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38173636	38173637	rs146890554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.1	CSF3	rs146890554-T	0.013918	1E-23		0.097230986	[0.078-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38173636	38173637	rs146890554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.1	CSF3	rs146890554-T	0.013926	1E-17		0.08419483	[0.065-0.103] unit increase	Affymetrix [93095623] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	1E-11		0.1077541	[0.077-0.139] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	1E-17		0.1351621	[0.1-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0136	6E-17		0.132392	[0.1-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	1E-13		0.1166919	[0.086-0.148] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	6E-17		0.1324835	[0.1-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	4E-16		0.1291504	[0.098-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	6E-12		0.1083127	[0.077-0.139] unit increase	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0135	8E-13		0.1130003	[0.082-0.144] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173636	38173637	rs146890554	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.1	CSF3	rs146890554-T	0.0136	2E-17		0.1348647	[0.1-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr17	38173901	38173902	rs1042658	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	17q21.1		rs1042658-T	0.6667	2E-17		0.0898	[0.069-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
876	chr17	38174854	38174855	rs2227336	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	17q21.1	NR	rs2227336-G	NR	1E-19	(Hispanic/Latino)	0.096	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
876	chr17	38174854	38174855	rs2227336	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	17q21.1	MED24, CSF3	rs2227336-T	0.663	9E-11		0.0262	[0.018-0.034] unit decrease	Illumina [27887661] (imputed)	N
876	chr17	38175425	38175426	rs1045929	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals	NA	17q21.1	NR	rs1045929-T	0.3913	2E-8		0.1735	[0.11-0.23] unit increase	Affymetrix, Illumina [7568149] (imputed)	N
876	chr17	38175425	38175426	rs1045929	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	17q21.1		rs1045929-T	0.6815	1E-6		0.0588	[0.035-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
876	chr17	38175461	38175462	rs12309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.1	MED24	rs12309-T	0.368178	3E-53		0.045545485	[0.04-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38175560	38175561	rs709591	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	5,461 European ancestry females, 1,338 females	NA	17q21.1	MED24, CSF3, PSMD3	rs709591-A	NR	2E-7		0.084	[0.053-0.115] unit decrease	Illumina [up to 7373492] (imputed)	N
876	chr17	38175560	38175561	rs709591	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	17q21.1	MED24	rs709591-?	NR	4E-56		0.09063	[0.079-0.102] unit increase novel	Illumina [6108953] (imputed)	N
876	chr17	38177281	38177282	rs11871747	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	27,236 European ancestry individuals	NA	17q21.1		rs11871747-T	0.3877	2E-8		0.0757	[0.049-0.102] unit increase	Affymetrix, Illumina [NR] (imputed)	N
876	chr17	38177838	38177839	rs12453732	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	17q21.1	NR	rs12453732-?	NR	2E-12	(conditional on round 2)	0.04875124	[0.035-0.062] unit increase novel	Illumina [6108953] (imputed)	N
876	chr17	38178148	38178149	rs2302776	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs2302776-?	NR	3E-30				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38178626	38178627	rs3213762	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated granulocyte proportions	34,470 European ancestry individuals, 6,152 African American individuals	NA	17q21.1	NR	rs3213762-?	NR	1E-14				Affymetrix, Illumina [6210527] (imputed)	N
876	chr17	38179491	38179492	rs2302777	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	17q21.1	NR	rs2302777-A	NR	5E-20		0.2814	[0.22-0.34] unit increase	Illumina [up to 525976] (imputed)	N
876	chr17	38179491	38179492	rs2302777	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		17q21.1	NR	rs2302777-A	0.62	8E-7	(HD vs. controls)	1.31	[1.18-1.46]	Illumina [414804]	N
876	chr17	38181133	38181134	rs143199581	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q21.1	MED24	rs143199581-A	0.0853	5E-8		0.004	[0.0028-0.0052] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
876	chr17	38183089	38183090	rs2302774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.1	MED24	rs2302774-T	0.382159	7E-54		0.046205766	[0.04-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38183089	38183090	rs2302774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.1	NR	rs2302774-T	0.370063	5E-39				Affymetrix, Illumina [23467995] (imputed)	N
876	chr17	38183089	38183090	rs2302774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q21.1	NR	rs2302774-T	0.382509	6E-36		0.024203	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
876	chr17	38184579	38184580	rs6503533	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q21.1		rs6503533-C	0.379	4E-97				Affymetrix [10369434] (imputed)	N
876	chr17	38184579	38184580	rs6503533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.1	MED24	rs6503533-T	0.6212	2E-16		0.018978765	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38184579	38184580	rs6503533	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs6503533-?	NR	7E-30				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38186500	38186501	rs7502971	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	17q21.1		rs7502971-A	0.37	2E-9		0.0498	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
876	chr17	38192136	38192137	rs11078935	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17q21.1	NR	rs11078935-G	0.3559	1E-31		0.0314306	[0.026-0.037] unit increase	Affymetrix [3505788] (imputed)	N
876	chr17	38192632	38192633	rs9303283	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	17q21.1	NR	rs9303283-C	0.42	8E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
876	chr17	38192632	38192633	rs9303283	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	17q21.1	NR	rs9303283-C	0.42	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
876	chr17	38192632	38192633	rs9303283	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	17q21.1	NR	rs9303283-C	0.42	9E-10		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
876	chr17	38194295	38194296	rs34003767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q21.1	NR	rs34003767-G	NR	6E-12		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr17	38194295	38194296	rs34003767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q21.1	NR	rs34003767-G	NR	2E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
876	chr17	38194295	38194296	rs34003767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.1	NR	rs34003767-G	NR	2E-15		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
876	chr17	38194295	38194296	rs34003767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q21.1	NR	rs34003767-G	NR	2E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
876	chr17	38211382	38211383	rs72834794	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q21.1	MED24	rs72834794-A	0.9148	7E-8		0.0041	[0.0029-0.0053] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
876	chr17	38213358	38213359	rs868150	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.1	GSDMB	rs868150-A	0.410769	1E-8		5.73	z score increase	NR [10847151] (imputed)	N
876	chr17	38213818	38213819	rs12601333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17q21.1		rs12601333-?	NR	2E-8				NR [~ 8900000] (imputed)	N
876	chr17	38214274	38214275	rs35982947	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	17q21.1	NR	rs35982947-C	0.3692	1E-8		0.01109	[0.0073-0.0149] unit decrease	NR [8968716] (imputed)	N
876	chr17	38214274	38214275	rs35982947	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.1	NR	rs35982947-A	NR	2E-8		5.657	z score increase	Affymetrix [10847151] (imputed)	N
876	chr17	38214274	38214275	rs35982947	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.1	ZPBP2	rs35982947-A	0.368951	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
876	chr17	38215116	38215117	rs8078692	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	17q21.1	THRA, MED24	rs8078692-A	NR	7E-6		1.098901	[1.05-1.15]	NR [NR]	N
876	chr17	38217758	38217759	rs62065215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs62065215-G	0.965	4E-8				Affymetrix [10369434] (imputed)	N
876	chr17	38218772	38218773	rs62065216	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q21.1	THRA	rs62065216-A	0.42	8E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
876	chr17	38218803	38218804	rs7502233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.1		rs7502233-?	NR	8E-8				NR [~ 8900000] (imputed)	N
876	chr17	38220431	38220432	rs61554907	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	17q21.1	ERBB2	rs61554907-G	0.876	2E-8		0.91686	[0.89-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
876	chr17	38231852	38231853	rs939348	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs939348-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
876	chr17	38239010	38239010	rs200282774	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	17q21.1	NR	rs200282774-GC		4E-6		0.1517	[0.087-0.216] SD units decrease	NR [10700000] (imputed)	N
876	chr17	38240215	38240216	rs2230701	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q21.1	NR	rs2230701-C	NR	2E-7		0.036	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
876	chr17	38246453	38246454	rs34826591	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs34826591-A	0.949	4E-14				Affymetrix [10369434] (imputed)	N
876	chr17	38251385	38251385	rs141144358	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs141144358-A	0.655164	3E-8		0.0538463	[0.035-0.073] decrease	Affymetrix [11014269] (imputed)	N
876	chr17	38251656	38251657	rs72836608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.1	NR1D1	rs72836608-A	0.341333	3E-12		0.0150344	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr17	38252659	38252660	rs883871	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.1	NR1D1	rs883871-A	NR	9E-14		1.1280316	NR	Affymetrix, Illumina [8278136] (imputed)	N
876	chr17	38253227	38253228	rs2102928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.1	NR	rs2102928-C	NR	1E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr17	38253227	38253228	rs2102928	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.1	NR	rs2102928-C	NR	3E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr17	38254491	38254492	rs2071427	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	17q21.1		rs2071427-?	NR	5E-8				Affymetrix [NR] (imputed)	N
876	chr17	38255035	38255036	rs35102205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.1		rs35102205-?	NR	7E-17				NR [~ 8900000] (imputed)	N
876	chr17	38255564	38255565	rs12941465	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	17q21.1	NR	rs12941465-A	0.2555	3E-11		0.0201722	[0.014-0.026] unit decrease	Affymetrix [3505788] (imputed)	N
876	chr17	38256400	38256401	rs17616365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.1	NR	rs17616365-G	0.96754	3E-23		0.0222062	[0.018-0.027] unit increase	Affymetrix [16582909] (imputed)	N
876	chr17	38256400	38256401	rs17616365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q21.1	NR	rs17616365-G	0.967911	7E-19		0.0280429	[0.021-0.035] unit increase	Affymetrix [16585854] (imputed)	N
876	chr17	38256400	38256401	rs17616365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.1	NR	rs17616365-G	0.96754	1E-15		0.0201173	[0.015-0.025] unit increase	Affymetrix [16582965] (imputed)	N
876	chr17	38256400	38256401	rs17616365	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q21.1	NR	rs17616365-G	0.967911	1E-12		0.0259419	[0.018-0.034] unit increase	Affymetrix [16585866] (imputed)	N
876	chr17	38269758	38269759	rs35142265	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.1	NR	rs35142265-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
877	chr17	38276895	38276896	rs75553180	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.1		rs75553180-?	NR	2E-8				NR [~ 8900000] (imputed)	N
877	chr17	38279035	38279036	rs117827273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q21.1		rs117827273-?	NR	3E-19				NR [~ 8900000] (imputed)	N
877	chr17	38279035	38279036	rs117827273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.1		rs117827273-?	NR	4E-9				NR [~ 8900000] (imputed)	N
877	chr17	38284862	38284863	rs75905358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.1	NR	rs75905358-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
877	chr17	38301900	38301901	rs151114485	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.1	CASC3	rs151114485-A	NR	6E-9		0.011408	[0.0076-0.0153] unit decrease	Affymetrix [18485882] (imputed)	N
877	chr17	38344484	38344485	rs2314338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.1		rs2314338-C	NR	5E-12		0.0126	[0.0091-0.0161] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
877	chr17	38344484	38344485	rs2314338	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q21.1		rs2314338-T	0.731	7E-37				Affymetrix [10369434] (imputed)	N
877	chr17	38344484	38344485	rs2314338	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q21.1		rs2314338-T	0.731	2E-17				Affymetrix [10369434] (imputed)	N
877	chr17	38344484	38344485	rs2314338	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.1	RAPGEFL1	rs2314338-T	0.730802	3E-13		0.0156879	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
877	chr17	38344484	38344485	rs2314338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.1		rs2314338-?	NR	3E-13				NR [~ 8900000] (imputed)	N
877	chr17	38344484	38344485	rs2314338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q21.1	Intergenic	rs2314338-T	0.7341	2E-9	(MTAG)	0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
877	chr17	38344484	38344485	rs2314338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.1	Intergenic	rs2314338-T	0.734	2E-11	(MTAG)	0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
877	chr17	38344484	38344485	rs2314338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.1		rs2314338-T	0.7304	1E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
877	chr17	38344484	38344485	rs2314338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.1	Intergenic	rs2314338-T	0.7304	3E-10	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
877	chr17	38352254	38352255	rs45443194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.1	RAPGEFL1	rs45443194-A	0.151856	2E-10		0.020291695	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr17	38352254	38352255	rs45443194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.1		rs45443194-?	NR	4E-11				NR [~ 8900000] (imputed)	N
877	chr17	38352377	38352378	rs75421923	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.1	NR	rs75421923-C	0.04878	2E-8	(STAT1)	0.04788	NR unit increase	Illumina [1671387] (imputed)	N
877	chr17	38352387	38352388	rs34223321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.1	RAPGEFL1	rs34223321-A	0.300547	5E-15		0.019028006	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
877	chr17	38352387	38352388	rs34223321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.1		rs34223321-?	NR	4E-47				NR [~ 8900000] (imputed)	N
877	chr17	38358010	38358011	rs78746532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.2		rs78746532-A	0.12083	1E-10		0.022035362	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
877	chr17	38360464	38360465	rs112068732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.2		rs112068732-?	NR	2E-7				NR [~ 8900000] (imputed)	N
877	chr17	38360550	38360551	rs7405635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.2	intergenic	rs7405635-C	0.2881	3E-22		0.03871422	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr17	38360550	38360551	rs7405635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.2	intergenic	rs7405635-C	0.288	5E-23		0.03963908	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr17	38360550	38360551	rs7405635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.2	intergenic	rs7405635-C	0.2881	2E-22		0.03903493	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr17	38362230	38362230	rs542448702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.2		rs542448702-AG	0.139429	4E-13		0.023666881	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
877	chr17	38362365	38362366	rs61024420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.2		rs61024420-G	0.299766	9E-18		0.020788634	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
877	chr17	38393150	38393151	rs75041531	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.2	WIPF2	rs75041531-?	NR	9E-7				Affymetrix [5486770] (imputed)	N
878	chr17	38407863	38407864	rs118101047	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.2	WIPF2	rs118101047-A	0.0231	1E-8		0.03890748	[0.026-0.052] unit decrease	Affymetrix [up to 18485882] (imputed)	N
878	chr17	38409080	38409081	rs62065255	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.2	WIPF2	rs62065255-C	0.2504	3E-8		1.052	NR	Affymetrix [9154080] (imputed)	N
878	chr17	38433224	38433225	rs78201730	33203692	Labadie JD	2020-11-17	Cancer Epidemiol Biomarkers Prev	Genetic predictors of severe skin toxicity in stage III colon cancer patients treated with cetuximab: NCCTG N0147 (Alliance).	Severe skin toxicity response to cetuximab in stage 3 colon cancer	216 European ancestry cases, 12 African ancestry cases, 9 Asian ancestry cases, 3 Oceanian ancestry cases, 3 cases, 819 European ancestry controls, 74 African ancestry controls, 51 Asian ancestry controls, 4 American Indian ancestry controls, 3 Oceanian ancestry controls, 15 controls	NA	17q21.2	NR	rs78201730-?	NR	6E-9		3.98	[2.50-6.33]	Illumina [10574903] (imputed)	N
878	chr17	38519290	38519291	rs502041	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	17q21.2		rs502041-G	NR	4E-6		0.18528	[0.11-0.26] unit decrease	Illumina [NR] (imputed)	N
878	chr17	38519544	38519545	rs202055764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.2	NR	rs202055764-A	NR	3E-10		0.0513	[0.035-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
878	chr17	38519544	38519545	rs202055764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.2	GJD3	rs202055764-A	0.024841	2E-11		0.048454117	[0.034-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
878	chr17	38525770	38525771	rs141951483	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.2		rs141951483-C	0.906	1E-16				Affymetrix [10369434] (imputed)	N
878	chr17	38533469	38533470	rs507671	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.2	RNA5SP441	rs507671-C	0.6015	8E-8		0.0351	[0.022-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
879	chr17	38544623	38544624	rs2715555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q21.2	NR	rs2715555-A	NR	8E-15		0.0268	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
879	chr17	38545192	38545193	rs13695	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q21.2	TOP2A	rs13695-T	0.2556	3E-7	(EA, women)	0.0286	[0.018-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
879	chr17	38545192	38545193	rs13695	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q21.2	TOP2A	rs13695-T	0.2556	1E-9	(EA)	0.027	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
879	chr17	38545192	38545193	rs13695	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q21.2	TOP2A	rs13695-T	0.2573	9E-8	(EA,women)	0.0304	[0.019-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
879	chr17	38545192	38545193	rs13695	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q21.2	TOP2A	rs13695-T	0.2573	4E-8	(EA)	0.0242	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
879	chr17	38554501	38554502	rs544365289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.2	TOP2A	rs544365289-C	8.32000000000055E-4	5E-9		0.29719505	[0.2-0.4] unit increase	Affymetrix [93095623] (imputed)	N
879	chr17	38561852	38561853	rs186672747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q21.2		rs186672747-T	NR	3E-8		0.0759	[0.049-0.103] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
879	chr17	38577415	38577416	rs190471737	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.2	TOP2A	rs190471737-A	0.9332	4E-10		0.024	[0.016-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
879	chr17	38592069	38592070	rs11867902	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q21.2	NR	rs11867902-G	0.973532	2E-10		0.0216951	[0.015-0.028] unit increase	Affymetrix [16582621] (imputed)	N
879	chr17	38592069	38592070	rs11867902	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q21.2	NR	rs11867902-G	0.973532	2E-8		0.0213007	[0.014-0.029] unit increase	Affymetrix [16582614] (imputed)	N
879	chr17	38599171	38599172	rs584438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.2		rs584438-A	0.42436	3E-21		0.0195373	[0.015-0.024] unit decrease	Illumina [13479295] (imputed)	N
879	chr17	38599171	38599172	rs584438	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.2	IGFBP4	rs584438-?	NR	1E-20		0.027212646	[0.021-0.033] unit decrease	Illumina [27896057] (imputed)	N
879	chr17	38599171	38599172	rs584438	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q21.2	NR	rs584438-?	NR	1E-7		0.03419363	[0.022-0.047] unit decrease	Illumina [34656550] (imputed)	N
879	chr17	38599171	38599172	rs584438	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q21.2	IGFBP4	rs584438-C	0.62	5E-12		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
879	chr17	38599229	38599230	rs584828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q21.2		rs584828-T	NR	8E-45		0.0183	[0.016-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
879	chr17	38599229	38599230	rs584828	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q21.2	NR	rs584828-?	NR	8E-8		0.03439366	[0.022-0.047] unit decrease	Illumina [34656550] (imputed)	N
879	chr17	38599229	38599230	rs584828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.2		rs584828-?	NR	2E-55				NR [~ 8900000] (imputed)	N
879	chr17	38604545	38604546	rs10305290	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.2	NR	rs10305290-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
879	chr17	38610664	38610665	rs538399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.2		rs538399-?	NR	7E-16				NR [~ 8900000] (imputed)	N
879	chr17	38620129	38620130	rs7225411	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	17q21.2	IGFBP4, TNS4	rs7225411-C	NR	7E-6		1.16	[1.09-1.23]	NR [NR]	N
879	chr17	38644213	38644214	rs77038344	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	17q21.2	IGFBP4, TNS4	rs77038344-T	0.08	1E-6	(EA)	1.17	[1.11 -1.24]	Illumina [11381182] (imputed)	N
879	chr17	38649101	38649102	rs151169359	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B salivarius abundance in stool	5,959 Finnish ancestry individuals	NA	17q21.2		rs151169359-T	0.0116319	3E-10		0.233277	[0.16-0.31] unit increase	Illumina [7980478] (imputed)	N
879	chr17	38649202	38649203	rs8072126	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	17q21.2	NR	rs8072126-?	NR	1E-6		0.0783	[0.047-0.11] unit decrease	Illumina [at least 560000] (imputed)	N
879	chr17	38657134	38657135	rs588305	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.2	NR	rs588305-C	0.02787	1E-8	(GGH)	0.05958	NR unit increase	Illumina [1671387] (imputed)	N
880	chr17	38715185	38715186	rs2228015	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.2		rs2228015-C	0.04081	3E-8		0.3833	[0.25-0.52] unit increase	Illumina [17945511] (imputed)	N
880	chr17	38715185	38715186	rs2228015	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR7 on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.2		rs2228015-C	0.04081	4E-23		0.683	[0.55-0.82] unit increase	Illumina [17945511] (imputed)	N
880	chr17	38715185	38715186	rs2228015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.2	CCR7	rs2228015-C	0.037443	4E-14		0.044012126	[0.033-0.055] unit increase	Affymetrix [93095623] (imputed)	N
880	chr17	38715185	38715186	rs2228015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.2	CCR7	rs2228015-C	0.0374330000000001	7E-19		0.051750287	[0.04-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr17	38715185	38715186	rs2228015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.2	CCR7	rs2228015-C	0.037436	4E-23		0.05757217	[0.046-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr17	38715185	38715186	rs2228015	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q21.2	CCR7	rs2228015-C	0.0379	6E-9		0.05500975	[0.036-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38716359	38716360	rs2290065	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q21.2		rs2290065-G	0.935	4E-9				Affymetrix [10369434] (imputed)	N
880	chr17	38716359	38716360	rs2290065	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17q21.2		rs2290065-G	0.935	1E-9				Affymetrix [10369434] (imputed)	N
880	chr17	38719607	38719608	rs76139923	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	17q21.2	CCR7	rs76139923-T	NR	7E-6		3.532	NR	Illumina [up to 4495750] (imputed)	N
880	chr17	38719607	38719608	rs76139923	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	17q21.2	CCR7	rs76139923-T	0.01517	7E-6		3.532	[2.035-6.13]	Illumina [4388215] (imputed)	N
880	chr17	38730385	38730386	rs143117818	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	17q21.2	NR	rs143117818-?		4E-7		0.06	[0.036-0.084] unit increase	Illumina [7533529] (imputed)	N
880	chr17	38754799	38754800	rs9889953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.2	NR	rs9889953-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
880	chr17	38755020	38755021	rs9893132	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.2	CCR7, SMARCE1	rs9893132-?	NR	3E-17		1.065	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
880	chr17	38755020	38755021	rs9893132	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.2	CCR7, SMARCE1	rs9893132-G	NR	4E-10		1.045	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
880	chr17	38756968	38756969	rs7216890	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	17q21.2	CCR7, SMARCE1	rs7216890-T	0.654	8E-15		0.034	[0.026-0.042] unit decrease	NR [NR] (imputed)	N
880	chr17	38756968	38756969	rs7216890	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	17q21.2	CCR7, SMARCE1	rs7216890-T	0.654	7E-14		0.033	[0.025-0.041] unit decrease	NR [7647814] (imputed)	N
880	chr17	38758649	38758650	rs2872812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.2		rs2872812-?	NR	2E-8				NR [~ 8900000] (imputed)	N
880	chr17	38763199	38763200	rs11658582	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.2	NR	rs11658582-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
880	chr17	38763199	38763200	rs11658582	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	17q21.2	NR	rs11658582-G	0.626	1E-10		0.905	[0.63-1.18] unit decrease	Affymetrix [10894596] (imputed)	N
880	chr17	38764523	38764524	rs112401631	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	17q21.2		rs112401631-A	0.015	1E-13		1.35		Affymetrix, Illumina [9397031] (imputed)	N
880	chr17	38764523	38764524	rs112401631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q21.2		rs112401631-A	NR	5E-35		0.0756	[0.064-0.088] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Central Memory CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.2		rs112401631-A	0.02262	2E-8		0.5009	[0.33-0.67] unit increase	Illumina [18349913] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Central Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.2		rs112401631-A	0.02262	9E-13		0.6242	[0.45-0.79] unit increase	Illumina [18349913] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.2		rs112401631-A	0.022643	8E-25		0.0800219	[0.065-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.2		rs112401631-A	0.022635	3E-24		0.079048835	[0.064-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.2		rs112401631-A	0.022626	2E-50		0.11647424	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.2		rs112401631-A	0.022627	9E-46		0.110823154	[0.096-0.126] unit increase	Affymetrix [93095623] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.2	NR	rs112401631-A	0.0218345	2E-50				Affymetrix, Illumina [19872809] (imputed)	N
880	chr17	38764523	38764524	rs112401631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.2	NR	rs112401631-A	0.022671	6E-54		0.109293	[0.095-0.123] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q21.2	SMARCE1, CCR7, KRT222, KRT24, TNS4, KRT25	rs112401631-A	0.0228	3E-10		1.14743	[1.10-1.20]	Affymetrix [32463443] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.2	NR	rs112401631-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.2	Intergenic	rs112401631-A	0.02277	2E-10		1.147699	[1.11-1.19]	Affymetrix [8274727] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.2	NR	rs112401631-A	0.01884	1E-43		1.336	[1.284-1.39]	Affymetrix [15688218] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	17q21.2	SMARCE1, CCR7	rs112401631-A	0.01598	4E-16		1.549	[1.399-1.714]	Affymetrix [15688218] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.2	NR	rs112401631-?	NR	8E-11	(conditional)			Affymetrix [15688218] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	17q21.2	SMARCE1, CCR7	rs112401631-A	0.01598	3E-17		1.378	[1.283-1.48]	Affymetrix [15688218] (imputed)	N
880	chr17	38764523	38764524	rs112401631	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	17q21.2	NR	rs112401631-A	0.01884	2E-40		1.295	[1.248-1.343]	Affymetrix [15688218] (imputed)	N
880	chr17	38764523	38764524	rs112401631	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.2	CCR7, SMARCE1	rs112401631-?	NR	2E-18		1.31	[1.25-1.37]	Affymetrix [9000000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.2	CCR7, SMARCE1	rs112401631-A	NR	2E-20		1.254	[1.21-1.3]	Affymetrix [9000000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.2		rs112401631-?	NR	7E-9				NR [~ 8900000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.2		rs112401631-?	NR	1E-60				NR [~ 8900000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.2		rs112401631-?	NR	3E-68				NR [~ 8900000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.2	CCR7, SMARCE1	rs112401631-A	0.01	2E-26		1.26	[1.22-1.3]	Affymetrix, Illumina [8307659] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0231	3E-13		0.09410581	[0.069-0.119] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0232	2E-15		0.1021933	[0.077-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0231	1E-10		0.08376145	[0.058-0.109] unit decrease	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0232	1E-13		0.09565865	[0.07-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0231	7E-9		0.07522227	[0.05-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38764523	38764524	rs112401631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q21.2	intergenic	rs112401631-A	0.0231	9E-14		0.09615405	[0.071-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr17	38770285	38770286	rs7221109	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.2	NR	rs7221109-C	0.6494	6E-25		1.0665529	[1.05-1.08]	Affymetrix [15688218] (imputed)	N
880	chr17	38770285	38770286	rs7221109	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	17q21.2	intergenic	rs7221109-?	0.65	1E-9		1.05	[0.99-1.12]	Affymetrix, Illumina [841622] (imputed)	N
880	chr17	38770641	38770641	rs11464691	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.2	CCR7, SMARCE1	rs11464691-TA	0.57	1E-21		1.052	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
880	chr17	38775149	38775150	rs757411	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	17q21.2	CCR7	rs757411-T	0.64	1E-7		1.1111112		Illumina [135870]	N
880	chr17	38775475	38775476	rs9911533	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	17q21.2		rs9911533-?	NR	7E-19		1.1	[1.07-1.12]	Illumina [5170515] (imputed)	N
880	chr17	38775475	38775476	rs9911533	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	17q21.2	KRT24, KRT222, SMARCE1	rs9911533-?	NR	1E-15		1.0869565		NR [74888535] (imputed)	N
880	chr17	38775475	38775476	rs9911533	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	17q21.2	KRT24, KRT222, SMARCE1	rs9911533-?	NR	2E-16		1.0869565	[1.06-1.11]	Affymetrix [74888535] (imputed)	N
880	chr17	38782860	38782861	rs146309381	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q21.2	NR	rs146309381-?	NR	2E-8				Illumina [7760689] (imputed)	N
881	chr17	38807956	38807957	rs7219483	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.2	NR	rs7219483-?	NR	5E-12	(conditional)			Affymetrix [15688218] (imputed)	N
881	chr17	38820444	38820445	rs143456058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.2		rs143456058-?	NR	2E-9				NR [~ 8900000] (imputed)	N
881	chr17	38851260	38851261	rs149028778	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q21.2	KRT222, KRT24, KRT25, KRT26	rs149028778-C	0.01	2E-7	(EA)	0.5813	[0.36-0.8] unit increase	Illumina [~ 9000000] (imputed)	N
881	chr17	38868235	38868236	rs2253717	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q21.2	KRT24, KRT25, KRT222, KRT26, SMARCE1, KRT27	rs2253717-G	0.71527	3E-8		1.0398793	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
881	chr17	38868235	38868236	rs2253717	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.2	KRT24, KRT222, SMARCE1	rs2253717-G	0.715255	3E-10		1.0430559	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
881	chr17	38869489	38869490	rs8067124	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.2	KRT24, KRT25	rs8067124-T	NR	5E-17		1.249	[1.2-1.3]	Affymetrix [9000000] (imputed)	N
881	chr17	38897090	38897091	rs72821884	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.2	NR	rs72821884-C	0.0230534	2E-9		0.0622841	[0.042-0.082] unit increase	NR [19129689] (imputed)	N
881	chr17	38921042	38921043	rs79947075	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q21.2	KRT25, KRT26, KRT222, KRT24, KRT28	rs79947075-C	0.01	2E-7		0.5473	[0.34-0.75] unit increase	Illumina [~ 9000000] (imputed)	N
882	chr17	38953326	38953327	rs191241826	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q21.2	KRT28	rs191241826-C	0.01	2E-6	(EA)	0.4843	[0.29-0.68] unit increase	Illumina [~ 9000000] (imputed)	N
882	chr17	38957001	38957002	rs7219451	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	17q21.2	KRT28, KRT10	rs7219451-?		4E-6	(SI+M)	0.17	[0.052-0.288] unit decrease	Illumina [693128]	N
882	chr17	38988702	38988703	rs111641876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.2		rs111641876-?	NR	1E-8				NR [~ 8900000] (imputed)	N
882	chr17	39039240	39039241	rs9912181	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q21.2	NR	rs9912181-?	NR	2E-6	(Latino)	0.6894	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
882	chr17	39046880	39046881	rs2315504	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	17q21.2	KRT23, KRT20	rs2315504-C	0.01	8E-6		1.9	[NR] cm increase	Affymetrix [334546]	N
883	chr17	39111944	39111945	rs141741055	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	17q21.2	NR	rs141741055-A	0.0712	6E-6		0.283	[0.16-0.41] unit increase	Illumina [NR] (imputed)	N
883	chr17	39118459	39118460	rs150760389	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	17q21.2	KRT39 and LOC107985072	rs150760389-T	0.385	4E-11		0.0459		Illumina [243345]	N
883	chr17	39129970	39129971	rs146571276	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q21.2	KRT40	rs146571276-A	0.00913694229382441	6E-6	(G_Alloprevotella_RNT)	1.11159	[0.63-1.59] unit increase	Illumina [7711310] (imputed)	N
883	chr17	39151856	39151857	rs7222331	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in diabetes	2,795 European ancestry cases, 4,831 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	17q21.2	NR	rs7222331-?		1E-7	(EA)	1.37	[1.18-1.59]	Affymetrix, Illumina [up to 9343778] (imputed)	N
883	chr17	39151856	39151857	rs7222331	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Early diabetic kidney disease in diabetes	2,795 European ancestry cases, 4,831 European ancestry controls	832 European ancestry cases, 2,653 European ancestry controls, 1,518 Asian cases, 3,990 Asian controls, 286 Chinese ancestry cases, 154 Chinese ancestry controls, 114 Indian ancestry cases, 66 Indian ancestry controls, 116 Malay ancestry cases, 21 Malay ancestry controls	17q21.2	NR	rs7222331-?		1E-6		1.37	[1.18-1.59]	Affymetrix, Illumina [up to 9343778] (imputed)	N
884	chr17	39216976	39216977	rs143290289	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	17q21.2	KRTAP	rs143290289-A	0.050861789	1E-8		0.121252395	[0.08-0.163] unit decrease	Illumina [up to 9350000] (imputed)	N
884	chr17	39250638	39250639	rs4006360	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	17q21.2	NR	rs4006360-?	NR	4E-6		1.2328	[NR]	Affymetrix [722112]	N
884	chr17	39251122	39251123	rs150537328	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.2	NR	rs150537328-C	0.0647	2E-6	(EA)	0.0642	[0.038-0.091] unit increase	Illumina [~ 11800000] (imputed)	N
884	chr17	39262813	39262814	rs2001523	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.2	NR	rs2001523-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
884	chr17	39268783	39268784	rs4057931	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q21.2	NA	rs4057931-A	0.6732	7E-9		0.0118	[0.0079-0.0157] unit decrease	NR [~ 27400000] (imputed)	N
884	chr17	39286179	39286180	rs7219230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.2		rs7219230-?	NR	1E-11				NR [~ 8900000] (imputed)	N
884	chr17	39286179	39286180	rs7219230	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q21.2	NA	rs7219230-T	0.3394	5E-10		0.0113	[0.0078-0.0148] unit increase	NR [~ 27400000] (imputed)	N
884	chr17	39305784	39305784	rs58117746	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs58117746-TGGCAGCAGCTGGGGC	0.39	4E-10		1.18	NR	Illumina [9068301] (imputed)	N
884	chr17	39313986	39313987	rs76173484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	17q21.2		rs76173484-T	0.0193184	2E-10		0.0852307	[0.059-0.111] unit increase	Illumina [7980478] (imputed)	N
884	chr17	39313986	39313987	rs76173484	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	17q21.2		rs76173484-T	0.0193184	3E-9		0.0975319	[0.065-0.13] unit increase	Illumina [7980478] (imputed)	N
885	chr17	39344872	39344873	rs56294834	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	17q21.2	NR	rs56294834-A	0.0210005	8E-6		1.127	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
885	chr17	39440738	39440738	rs199651132	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	17q21.2	NR	rs199651132-TA	0.06581	4E-6		0.289	[0.17-0.41] unit decrease	Illumina [10677593] (imputed)	N
886	chr17	39491978	39491979	rs140814701	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.2	KRT33A	rs140814701-?	NR	7E-11		1.1198208	NR	Affymetrix [9154080] (imputed)	N
886	chr17	39551098	39551099	rs117612447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.2		rs117612447-?	NR	1E-32				NR [~ 8900000] (imputed)	N
886	chr17	39551098	39551099	rs117612447	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	17q21.2	KRT31	rs117612447-?	NR	1E-9		1.2172855	NR	Affymetrix [9154080] (imputed)	N
886	chr17	39570717	39570718	rs117194419	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	17q21.2	LOC100505782, KRT37	rs117194419-G	0.974630623	9E-6		1.4204632	[1.22-1.66]	Illumina [10439017] (imputed)	N
887	chr17	39604272	39604273	rs139177071	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	17q21.2		rs139177071-C	0.967001	8E-6		0.0327523	[0.018-0.047] unit increase	Illumina [13900000] (imputed)	N
887	chr17	39616426	39616427	rs9893787	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	17q21.2		rs9893787-?	NR	2E-6		38.7814	[37.28-40.28]	NR [663083]	N
887	chr17	39617138	39617139	rs2857249	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.2	NR	rs2857249-C	0.312442	2E-11		0.022408	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
887	chr17	39633316	39633317	rs2239711	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs2239711-G	0.707844	5E-11	(adjusted)	1.18	NR	Illumina [9068301] (imputed)	N
888	chr17	39785564	39785565	rs554660980	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.2	KRT42P	rs554660980-A	0.0018	2E-7		0.958	[0.6-1.32] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
889	chr17	39858199	39858200	rs56291217	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs56291217-A	0.563773	7E-8	(adjusted)	1.14	NR	Illumina [9068301] (imputed)	N
889	chr17	39867247	39867248	rs34074411	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	17q21.2	NR	rs34074411-C	0.56	3E-10		0.93	NR	NR [8546065] (imputed)	N
889	chr17	39890812	39890813	rs34106519	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	17q21.2		rs34106519-?	NR	8E-6		7.73989	[6.84-8.64]	NR [663083]	N
889	chr17	39890864	39890865	rs201166499	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	17q21.2		rs201166499-?	NR	8E-6		15.9551	[14.74-17.17]	NR [666300]	N
889	chr17	39890875	39890876	rs4796604	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (syntactic complexity)	149 isolated population cases, 210 isolated population controls	NA	17q21.2	HAP1	rs4796604-?	0.444	5E-6	(Complex structures)	0.358	[0.21-0.51] unit increase	Illumina [223580]	N
889	chr17	39891200	39891201	rs550216862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17q21.2		rs550216862-T	NR	3E-9		0.4233	[0.28-0.56] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
889	chr17	39897263	39897264	rs6503659	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	17q21.2	HAP1	rs6503659-A	0.13	3E-16		1.27	[1.20-1.34]	NR [NR]	N
889	chr17	39902270	39902271	rs7219088	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	17q21.2	intergenic	rs7219088-T	0.584	1E-15		0.19	[0.14-0.24] unit increase	Affymetrix [339439]	N
889	chr17	39911372	39911373	rs55634776	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Arm bone mineral content	2,109 White British ancestry male individuals	NA	17q21.2		rs55634776-T	NR	1E-8		39.77	g increase	NR [6137607] (imputed)	N
889	chr17	39913770	39913771	rs143043662	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.2	JUP	rs143043662-C	0.989501	3E-15		0.0687204	[0.052-0.086] unit decrease	NR [13737936] (imputed)	N
889	chr17	39913770	39913771	rs143043662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.2		rs143043662-?	NR	4E-16				NR [~ 8900000] (imputed)	N
889	chr17	39913770	39913771	rs143043662	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.2		rs143043662-?	NR	2E-16		0.0780376	[0.059-0.097] unit decrease	Affymetrix [20259828] (imputed)	N
889	chr17	39913770	39913771	rs143043662	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.2	JUP	rs143043662-C	0.986729	4E-10		0.0876303	[0.059-0.116] unit decrease	NR [17166351] (imputed)	N
889	chr17	39913770	39913771	rs143043662	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.2	JUP	rs143043662-C	0.986591	5E-6	(women)	0.0872999	[0.048-0.126] unit decrease	NR [17166351] (imputed)	N
889	chr17	39919365	39919366	rs78437817	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	17q21.2		rs78437817-?	NR	6E-6		5.2587	[4.54-5.98]	NR [674885]	N
889	chr17	39925712	39925713	rs41283425	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs41283425-T	0.0597041	4E-7	(adjusted)	0.73	NR	Illumina [9068301] (imputed)	N
889	chr17	39925712	39925713	rs41283425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.2		rs41283425-?	NR	5E-14				NR [~ 8900000] (imputed)	N
889	chr17	39925712	39925713	rs41283425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.2		rs41283425-?	NR	8E-10				NR [~ 8900000] (imputed)	N
889	chr17	39925712	39925713	rs41283425	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.2	NR	rs41283425-T	0.0501201	2E-15		0.0559405	[0.042-0.07] unit increase	NR [19129689] (imputed)	N
889	chr17	39926810	39926811	rs9901834	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs9901834-A	0.100527	7E-10	(adjusted)	0.72	NR	Illumina [9068301] (imputed)	N
889	chr17	39930484	39930485	rs143452812	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	17q21.2	NR	rs143452812-C	0.022	9E-6		0.3997	[0.22-0.58] unit decrease	NR [NR] (imputed)	N
889	chr17	39936569	39936570	rs12948083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q21.2		rs12948083-G	NR	2E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
889	chr17	39938468	39938469	rs7222250	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs7222250-T	0.56431	6E-14	(adjusted)	0.81	NR	Illumina [9068301] (imputed)	N
889	chr17	39940659	39940660	rs182004736	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on CD45RA- CD4 not regulatory T cell	3,435 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q21.2		rs182004736-G	0.10554	6E-9		0.2449	[0.16-0.33] unit decrease	Illumina [18357036] (imputed)	N
889	chr17	39940767	39940768	rs7213095	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.2		rs7213095-?	NR	5E-10		0.0125896	[0.0082-0.017] unit decrease	Affymetrix [20259828] (imputed)	N
889	chr17	39944356	39944357	rs11871109	32936915	Chai JF	2020-09-16	J Clin Endocrinol Metab	Genome-wide association for HbA1c in Malay identified deletion on SLC4A1 that influences HbA1c independent of glycemia.	Glycated hemoglobin levels	2,704 Malay ancestry individuals	NA	17q21.2		rs11871109-T	0.98	3E-9		0.283	[0.2-0.37] unit increase	Illumina [47095002] (imputed)	N
889	chr17	39953960	39953961	rs191392302	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.2	LEPREL4	rs191392302-?	NR	3E-8				Affymetrix [5486770] (imputed)	N
889	chr17	39957021	39957022	rs78139258	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.2	LEPREL4	rs78139258-T	0.0892	7E-9		0.2697	[0.18-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
889	chr17	39961557	39961558	rs5820435	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs5820435-A	0.45	1E-11		0.82	NR	Illumina [9068301] (imputed)	N
889	chr17	39967441	39967442	rs13412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs13412-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
890	chr17	39977733	39977734	rs8073219	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.2	FKBP10	rs8073219-A	0.2564	3E-12		0.0152	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
890	chr17	39978151	39978152	rs190452743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.2	FKBP10	rs190452743-T	0.002687	8E-11		0.15127096	[0.11-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
890	chr17	39978151	39978152	rs190452743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.2	NR	rs190452743-T	0.002721	3E-11		0.141725	[0.1-0.184] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
890	chr17	39987129	39987130	rs4796712	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	17q21.2	NT5C3B	rs4796712-?	NR	3E-6		0.052	[NR] unit increase	Illumina [522636]	N
890	chr17	39987129	39987130	rs4796712	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	17q21.2	NT5C3B	rs4796712-?	NR	2E-6	(Males only)	0.055	[NR] unit increase	Illumina [522636]	N
890	chr17	39987129	39987130	rs4796712	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	17q21.2	NT5C3B	rs4796712-?	NR	2E-6	(FEV1/FVC < 80%)	0.057	[NR] unit increase	Illumina [522636]	N
890	chr17	39990915	39990916	rs143382920	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	17q21.2	NR	rs143382920-G	NR	6E-6		0.6286	NR	Illumina [at least 560000] (imputed)	N
890	chr17	40001007	40001008	rs8068544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.2	KLHL10	rs8068544-C	0.916167	2E-38		0.052010596	[0.044-0.06] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40001007	40001008	rs8068544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q21.2	KLHL10	rs8068544-C	0.9171	6E-13		0.04684634	[0.034-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
890	chr17	40001007	40001008	rs8068544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q21.2	KLHL10	rs8068544-C	0.917	1E-14		0.05021531	[0.037-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
890	chr17	40003689	40003690	rs75379794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q21.2	KLHL10	rs75379794-A	0.040025	2E-12		0.040598854	[0.029-0.052] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40005649	40005650	rs11079018	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q21.2	RP11-156E6.1	rs11079018-G	0.9176	3E-19		0.05845597	[0.046-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
890	chr17	40012091	40012092	rs4796724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q21.2	KLHL11	rs4796724-C	0.9163071	6E-41		0.054248005	[0.046-0.062] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40012232	40012233	rs11871382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q21.2		rs11871382-T	NR	3E-13		0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
890	chr17	40012971	40012972	rs35352013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.2	KLHL11	rs35352013-T	0.9097878	2E-22		0.03818132	[0.03-0.046] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40012971	40012972	rs35352013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.2	KLHL11	rs35352013-T	0.9097927	7E-25		0.04040805	[0.033-0.048] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40012971	40012972	rs35352013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q21.2	KLHL11	rs35352013-T	0.9097616	9E-35		0.04818505	[0.041-0.056] unit increase	Affymetrix [93095623] (imputed)	N
890	chr17	40027650	40027651	rs7209507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.2		rs7209507-?	NR	6E-16				NR [~ 8900000] (imputed)	N
890	chr17	40073276	40073277	rs12952729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs12952729-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
890	chr17	40078223	40078224	rs4796622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q21.2	ACLY	rs4796622-G	0.9165	1E-17		0.05538642	[0.043-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
890	chr17	40090002	40090003	rs35455419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q21.2	TTC25	rs35455419-G	0.917	4E-16		0.0522913	[0.04-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
891	chr17	40113006	40113007	rs116934648	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	17q21.2	NR	rs116934648-G	NR	2E-6		0.5847	NR	Illumina [at least 560000] (imputed)	N
891	chr17	40115016	40115017	rs9900219	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNP	5,363 Icelandic ancestry individuals	NA	17q21.2		rs9900219-G	0.3003	4E-17		0.170129	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
891	chr17	40123828	40123829	rs12602950	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.2	CNP	rs12602950-A	0.70375	4E-12	(CNP, 6609_22_3)	0.18676534	[0.13-0.24] unit increase	Illumina [> 1000000] (imputed)	N
891	chr17	40134781	40134782	rs111637825	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs111637825-A	0.063862	4E-7	(adjusted)	0.74	NR	Illumina [9068301] (imputed)	N
891	chr17	40137437	40137438	rs10708222	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA1 mutation in breast cancer	7,257 European ancestry cases, 60,212 European ancestry controls	NA	17q21.2	NR	rs10708222-T	0.171748	8E-7	(adjusted)	1.18	NR	Illumina [9068301] (imputed)	N
891	chr17	40145952	40145953	rs139414355	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17q21.2	NR	rs139414355-T	NR	7E-6				NR [NR] (imputed)	N
891	chr17	40145952	40145953	rs139414355	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	17q21.2	NR	rs139414355-T	NR	7E-6				NR [NR] (imputed)	N
891	chr17	40145952	40145953	rs139414355	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	17q21.2	DNAJC7	rs139414355-T	0.0199	3E-6		0.416	[0.24-0.59] unit decrease	NR [NR] (imputed)	N
891	chr17	40182098	40182099	rs147515485	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	17q21.2	NR	rs147515485-T	NR	2E-6				NR [NR] (imputed)	N
891	chr17	40182098	40182099	rs147515485	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	17q21.2	ZNF385C	rs147515485-T	NR	2E-6			[NR]	NR [NR] (imputed)	N
891	chr17	40182098	40182099	rs147515485	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	17q21.2	NR	rs147515485-T	0.0181	5E-7		0.4724	[0.29-0.66] unit decrease	NR [NR] (imputed)	N
891	chr17	40213503	40213504	rs112375200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q21.2	ZNF385C	rs112375200-A	0.030891	1E-10		0.041474428	[0.029-0.054] unit increase	Affymetrix [93095623] (imputed)	N
891	chr17	40213503	40213504	rs112375200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.2	ZNF385C	rs112375200-A	0.03089	3E-10		0.040825207	[0.028-0.053] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40248643	40248644	rs34422007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.2	NR	rs34422007-T	NR	3E-9		0.0374	[0.025-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
892	chr17	40257162	40257163	rs2074158	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q21.2	DHX58, KAT2A	rs2074158-T	0.8194	2E-10		0.0543	[0.037-0.071] unit decrease	NR [8041861] (imputed)	N
892	chr17	40257162	40257163	rs2074158	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17q21.2	NR	rs2074158-C	NR	4E-6		0.011922387	[0.0069-0.017] unit decrease	Illumina [242289]	N
892	chr17	40257162	40257163	rs2074158	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	17q21.2	NR	rs2074158-C	0.17	8E-7		0.022	unit decrease	Illumina [242289]	N
892	chr17	40258126	40258127	rs35370188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.2	DHX58	rs35370188-C	0.109968	2E-10		0.023235658	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40261544	40261545	rs12600570	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	17q21.2	DHX58	rs12600570-T	NR	3E-7		5.142	[NR] unit increase	Illumina [632375]	N
892	chr17	40263457	40263458	rs34891485	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.2	DHX58, KAT2A	rs34891485-T	0.95	3E-7		0.074	[0.047-0.101] unit decrease	Affymetrix [7947838] (imputed)	N
892	chr17	40270237	40270238	rs2074164	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q21.2	KAT2A	rs2074164-?	NR	3E-12		0.0434238	[0.031-0.056] unit increase	Illumina [4804024] (imputed)	N
892	chr17	40270237	40270238	rs2074164	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q21.2	DHX58, HSPB9, KAT2A, RAB5C	rs2074164-C	0.1956	7E-9		0.0423	[0.028-0.057] unit increase	Affymetrix [at least 7947838] (imputed)	N
892	chr17	40271756	40271757	rs730086	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Inflammatory bowel disease	1,511 African American cases, 1,797 African American controls	NA	17q21.2	KAT2A	rs730086-A	NR	2E-6		1.373	[1.204-1.567]	Illumina [130241]	N
892	chr17	40272593	40272594	rs2285657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.2	CTD-2132N18.3, KAT2A	rs2285657-A	0.226547	6E-16		0.021644736	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40274872	40274873	rs1122326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.2		rs1122326-C	NR	4E-31		0.0293	[0.024-0.034] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
892	chr17	40274872	40274873	rs1122326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.2	HSPB9	rs1122326-C	0.22611	9E-14		0.019838655	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40274872	40274873	rs1122326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q21.2	NR	rs1122326-C	0.225658	3E-10		0.013968	[0.0096-0.0183] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
892	chr17	40276058	40276059	rs12941469	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q21.2	NR	rs12941469-C	0.226485	4E-22		0.022326	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
892	chr17	40278521	40278522	rs9902341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q21.2		rs9902341-T	NR	2E-16		0.0218	[0.017-0.027] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
892	chr17	40278521	40278522	rs9902341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	17q21.2		rs9902341-T	NR	5E-10		0.0801	[0.055-0.105] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
892	chr17	40287105	40287106	rs78862468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.2		rs78862468-?	NR	3E-10				NR [~ 8900000] (imputed)	N
892	chr17	40289011	40289012	rs11079035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q21.2		rs11079035-A	NR	3E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
892	chr17	40289011	40289012	rs11079035	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.2	CTD-2132N18.3, RAB5C	rs11079035-A	0.165524	6E-9		0.017265987	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40289011	40289012	rs11079035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.2		rs11079035-?	NR	3E-11				NR [~ 8900000] (imputed)	N
892	chr17	40289011	40289012	rs11079035	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	17q21.2	KAT2A, HSPB9, RAB5C	rs11079035-A	0.1725	7E-10		1.209	[1.14-1.29]	Illumina [8966411] (imputed)	N
892	chr17	40289363	40289364	rs7224737	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		17q21.2	RAB5C	rs7224737-?	NR	2E-9		0.0073	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
892	chr17	40289363	40289364	rs7224737	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		17q21.2	RAB5C	rs7224737-?	NR	5E-9		0.0068	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
892	chr17	40289363	40289364	rs7224737	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	17q21.2	RAB5C	rs7224737-A	0.24	6E-9		0.0061	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
892	chr17	40289411	40289412	rs12325861	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	17q21.2	RAB5C	rs12325861-C	0.166127	2E-14		0.0937906	[0.07-0.118] unit increase	Affymetrix [7288503] (imputed)	N
892	chr17	40289411	40289412	rs12325861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	17q21.2		rs12325861-?	NR	2E-12				NR [~ 8900000] (imputed)	N
892	chr17	40293564	40293565	rs75140957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.2	NR	rs75140957-A	NR	9E-11		0.0269	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
892	chr17	40293864	40293865	rs1869365	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF and FVIII levels	Up to 42,379 European ancestry individuals, up to 4,500 African American individuals, up to 773 Asian ancestry individuals, up to 1,440 Hispanic individuals	NA	17q21.2	RAB5C, KAT2A	rs1869365-?	NR	5E-8				Affymetrix, Illumina [up to 13887196] (imputed)	N
892	chr17	40294182	40294184	rs34759135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.2	CTD-2132N18.3, RAB5C	rs34759135-T	0.228646	1E-11		0.0241916	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
892	chr17	40296922	40296923	rs61653336	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17q21.2		rs61653336-G	0.834722	1E-11		0.0374114	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
892	chr17	40297657	40297658	rs13380830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	17q21.2		rs13380830-G	NR	2E-15		0.0911	[0.069-0.114] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
892	chr17	40297657	40297658	rs13380830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	17q21.2		rs13380830-?	NR	5E-9				NR [~ 8900000] (imputed)	N
892	chr17	40299043	40299055	rs61382221	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	17q21.2	STAT3	rs61382221-A	0.159	1E-12		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
892	chr17	40300125	40300126	rs8071235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.2	NR	rs8071235-A	0.222368	2E-23				Affymetrix, Illumina [23467995] (imputed)	N
892	chr17	40313181	40313182	rs148849317	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs148849317-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
892	chr17	40317240	40317241	rs79089478	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.2	KCNH4, HSD17B1	rs79089478-T	0.97	3E-9		0.584	[0.39-0.78] unit increase	Affymetrix [~ 9800000] (imputed)	N
893	chr17	40388429	40388430	rs12150495	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q21.2		rs12150495-A	NR	2E-15		0.0316	[0.024-0.039] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
893	chr17	40388429	40388430	rs12150495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.2		rs12150495-?	NR	4E-8				NR [~ 8900000] (imputed)	N
893	chr17	40390628	40390629	rs8066625	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	17q21.2	STAT5B, GHDC, STAT5A	rs8066625-A	0.1	5E-9		1.151	[1.098-1.206]	Affymetrix [10894596] (imputed)	N
893	chr17	40394366	40394367	rs117770911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q21.2		rs117770911-C	0.987804	1E-8		0.101143	[0.066-0.136] unit decrease	NR [11722792] (imputed)	N
893	chr17	40395191	40395191	rs11443474	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.2		rs11443474-?	NR	4E-11		0.014648	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
893	chr17	40395210	40395211	rs79843305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	STAT5B	rs79843305-T	NR	8E-13		0.0219836	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
893	chr17	40395210	40395211	rs79843305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	STAT5B	rs79843305-T	NR	3E-13		0.0224267	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
893	chr17	40395932	40395933	rs76828422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q21.2		rs76828422-A	NR	4E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
893	chr17	40408740	40408741	rs62076928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs62076928-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
893	chr17	40412935	40412935	rs11402155	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q21.2	STAT5B	rs11402155-CT	0.288151614809081	3E-9		0.045008328	[0.03-0.06] unit decrease	Affymetrix [35186738] (imputed)	N
893	chr17	40414078	40414079	rs11079041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.2		rs11079041-?	NR	4E-14				NR [~ 8900000] (imputed)	N
893	chr17	40414078	40414079	rs11079041	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q21.2	NR	rs11079041-A	0.3	4E-16		0.016	[0.012-0.02] unit increase	Affymetrix [2446094] (imputed)	N
893	chr17	40414078	40414079	rs11079041	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q21.2	NR	rs11079041-A	0.3	5E-8				Affymetrix [2446094] (imputed)	N
893	chr17	40414861	40414862	rs7207591	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.2	STAT5B	rs7207591-A	0.76	1E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
893	chr17	40418570	40418571	rs9909628	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q21.2	STAT5B	rs9909628-A	0.684838	3E-11		1.0440136	1.03082126991627-1.05737475499095]	NR [9572556] (imputed)	N
893	chr17	40426299	40426303	rs534342062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.2	STAT5B	rs534342062-C	0.418906	5E-11		0.015529349	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr17	40426299	40426303	rs534342062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.2	STAT5B	rs534342062-C	0.418898	4E-10		0.014767111	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
893	chr17	40426299	40426303	rs534342062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.2	STAT5B	rs534342062-C	0.418932	6E-9		0.013699455	[0.0091-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
893	chr17	40427146	40427147	rs8080122	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.2	STAT5B	rs8080122-A	0.3064	2E-8				Affymetrix [15688218] (imputed)	N
893	chr17	40428960	40428961	rs4029774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	17q21.2		rs4029774-G	NR	6E-11		0.0493	[0.035-0.064] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
893	chr17	40444172	40444173	rs117309129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.2		rs117309129-?	NR	3E-10				NR [~ 8900000] (imputed)	N
893	chr17	40448843	40448844	rs9907571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.2	NR	rs9907571-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
893	chr17	40449150	40449151	rs9908318	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.2	STAT5A	rs9908318-G	0.692893	5E-14		0.0151283	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
893	chr17	40449617	40449618	rs28727898	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q21.2	STAT5A	rs28727898-?	NR	2E-9		0.0167	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
893	chr17	40454683	40454684	rs56000884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	STAT5A	rs56000884-A	NR	6E-9		0.0265861	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
893	chr17	40455552	40455553	rs112488574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	STAT5A	rs112488574-C	NR	3E-9		0.0269724	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
893	chr17	40466091	40466092	rs1053004	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.2	KCNH4, HSD17B1	rs1053004-A	0.635667438	4E-7		0.1692	[0.1-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
893	chr17	40466091	40466092	rs1053004	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q21.2	STAT3	rs1053004-A	0.6358	7E-10		0.0229908	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr17	40474350	40474351	rs780466766	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgG)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	17q21.2	STAT3	rs780466766-G	0.0096	3E-6		0.31	NR SD units increase	Illumina [21568490] (imputed)	N
893	chr17	40476666	40476667	rs17881940	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	17q21.2	STAT3	rs17881940-?	NR	3E-6	(Hispanic)	1.6393442	[1.33-2.04]	Illumina [at least 5000000] (imputed)	N
893	chr17	40481528	40481529	rs2293152	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	17q21.2	STAT3	rs2293152-C	0.62	4E-8		1.22	[NR]	Affymetrix, Illumina [2529394]	N
893	chr17	40485214	40485215	rs7224339	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Inflammatory bowel disease	1,511 African American cases, 1,797 African American controls	NA	17q21.2	STAT3	rs7224339-A	NR	9E-6		1.8115942	[1.39-2.35]	Illumina [130241]	N
893	chr17	40485238	40485239	rs17881320	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	17q21.2	STAT3	rs17881320-T	0.08	3E-6	(random effects)		NR	Illumina [15539996] (imputed)	N
893	chr17	40485238	40485239	rs17881320	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	17q21.2	STAT3	rs17881320-T	0.08	1E-7	(EA, fixed effects)	1.08	[1.05-1.11]	Illumina [15539996] (imputed)	N
893	chr17	40495473	40495475	rs34846688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q21.2		rs34846688-C	NR	1E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
893	chr17	40495473	40495475	rs34846688	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.2	STAT3	rs34846688-CTT	0.4571	3E-8		0.1573	[0.1-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
893	chr17	40499532	40499533	rs6503695	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q21.2	NR	rs6503695-?	NR	1E-14	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr17	40502074	40502075	rs34972443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.2	STAT3	rs34972443-C	0.354789	2E-11		0.0221061	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
894	chr17	40502074	40502075	rs34972443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.2	STAT3	rs34972443-C	0.354763	8E-14		0.017389283	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
894	chr17	40507979	40507980	rs9891119	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	17q21.2	STAT3	rs9891119-A	NR	2E-15		1.37	[1.27-1.48]	Illumina [4929034] (imputed)	N
894	chr17	40507979	40507980	rs9891119	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q21.2	STAT3	rs9891119-C	NR	2E-10		1.11	[1.09-1.12]	Illumina [465434]	N
894	chr17	40508540	40508541	rs3883338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q21.2		rs3883338-A	NR	1E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
894	chr17	40513731	40513732	rs72823022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.2	NR	rs72823022-C	NR	3E-9		0.0267	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
894	chr17	40514200	40514201	rs744166	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q21.2	NR	rs744166-?	NR	1E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr17	40514200	40514201	rs744166	20159113	Jakkula E	2010-02-12	Am J Hum Genet	Genome-wide association study in a high-risk isolate for multiple sclerosis reveals associated variants in STAT3 gene.	Multiple sclerosis	68 Finland founder cases, 136 Finland founder controls	83 Finland founder cases, 365 Finland founder controls 3,285 European ancestry cases, 6,379 European ancestry controls, 1,202 cases, 3,399 controls	17q21.2	STAT3	rs744166-G	0.41	3E-10		1.15	[1.10-1.20]	Illumina [297343]	N
894	chr17	40514200	40514201	rs744166	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	17q21.2	STAT3	rs744166-A	0.57	7E-12		1.18	[NR]	Affymetrix, Illumina [635547] (imputed)	N
894	chr17	40516615	40516616	rs113366589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.2		rs113366589-T	0.907975	6E-9		0.0407241	[0.027-0.054] unit decrease	NR [11722792] (imputed)	N
894	chr17	40516615	40516616	rs113366589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	17q21.2		rs113366589-T	0.907975	3E-8		0.0390975	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
894	chr17	40516615	40516616	rs113366589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	17q21.2		rs113366589-T	0.907975	2E-8		0.0393252	[0.026-0.053] unit decrease	NR [11722792] (imputed)	N
894	chr17	40516615	40516616	rs113366589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	17q21.2		rs113366589-T	0.907975	2E-8		0.0395225	[0.026-0.053] unit decrease	NR [11722792] (imputed)	N
894	chr17	40516615	40516616	rs113366589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	17q21.2		rs113366589-T	0.907975	1E-8		0.0399038	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
894	chr17	40516615	40516616	rs113366589	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.2	NR	rs113366589-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
894	chr17	40519924	40519925	rs957971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.2	STAT3	rs957971-G	0.650261	6E-13		0.017179266	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr17	40521203	40521204	rs35840966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.2	NR	rs35840966-T	0.36729	3E-15				Affymetrix, Illumina [20825802] (imputed)	N
894	chr17	40522712	40522713	rs112220485	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q21.2	STAT3	rs112220485-T	0.914393	4E-8		0.020503	[0.013-0.028] unit decrease	Affymetrix [NR] (imputed)	N
894	chr17	40523724	40523725	rs9897389	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	17q21.2	STAT3	rs9897389-T	0.587	1E-7		0.0169758	[0.011-0.023] unit decrease	Illumina [13520550] (imputed)	N
894	chr17	40526272	40526273	rs12949918	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	17q21.2	STAT3	rs12949918-T	0.588	8E-10		0.0227693	[0.015-0.03] unit decrease	Illumina [13520550] (imputed)	N
894	chr17	40527543	40527544	rs12942547	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	17q21.2	NAGLU, STAT5A, PTRF, STAT5B, STAT3, ATP6V0A1	rs12942547-?		1E-10				Illumina [9578670] (imputed)	N
894	chr17	40527543	40527544	rs12942547	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	17q21.2	NAGLU, STAT5A, PTRF, STAT5B, STAT3, ATP6V0A1	rs12942547-?		2E-17				Illumina [9725440] (imputed)	N
894	chr17	40527543	40527544	rs12942547	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q21.2	NAGLU, STAT5A, PTRF, STAT5B, STAT3, ATP6V0A1	rs12942547-?		2E-11				Illumina [9560910] (imputed)	N
894	chr17	40527543	40527544	rs12942547	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	17q21.2	STAT3, STAT5B, STAT5A	rs12942547-G	0.33	2E-9				Illumina [522285]	N
894	chr17	40527543	40527544	rs12942547	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q21.2	STAT3	rs12942547-?	NR	2E-15	(subset analysis)			Illumina [130052]	N
894	chr17	40527543	40527544	rs12942547	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q21.2	NR	rs12942547-A	0.58	7E-11	(EA)	1.0883672		Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr17	40527543	40527544	rs12942547	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q21.2	NR	rs12942547-A	0.58	1E-16	(EA)	1.1087568	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
894	chr17	40527543	40527544	rs12942547	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q21.2	STAT3, STAT5B, STAT5A	rs12942547-A	0.58	6E-22		1.103	[1.072-1.136]	Affymetrix, Illumina [1230000] (imputed)	N
894	chr17	40529834	40529835	rs1026916	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.2	STAT3	rs1026916-A	NR	2E-28		1.114082	NR	Affymetrix, Illumina [8278136] (imputed)	N
894	chr17	40530762	40530763	rs4796791	32024964	Gonzalez-Serna D	2020-02-05	Sci Rep	A cross-disease meta-GWAS identifies four new susceptibility loci shared between systemic sclerosis and Crohn's disease.	Crohn's disease or systemic sclerosis	2,281 European ancestry systemic sclerosis cases, 1,988 European ancestry Crohn's disease cases, 7,388 European ancestry controls	3,453 European ancestry systemic sclerosis cases, 2,600 European ancestry Crohn's disease cases, 7,180 European ancestry controls	17q21.2	STAT3	rs4796791-T		3E-8			[NR]	Illumina [5994231] (imputed)	N
894	chr17	40530762	40530763	rs4796791	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	17q21.2	STAT3	rs4796791-A	0.36	4E-20		1.12		Illumina [161311]	N
894	chr17	40535384	40535384	rs557536055	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q21.2		rs557536055-C	0.701	1E-12		0.09	[-0.11--0.06] % decrease	Affymetrix [NR] (imputed)	N
894	chr17	40536395	40536396	rs8070763	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	17q21.2		rs8070763-C	NR	2E-6		0.7607		Illumina [7574753] (imputed)	N
894	chr17	40536803	40536804	rs62075782	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.2	KCNH4, HSD17B1	rs62075782-C	0.239640408	6E-8		0.2337	[0.15-0.32] unit increase	Affymetrix [~ 9800000] (imputed)	N
894	chr17	40539824	40539825	rs3736164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q21.2	NR	rs3736164-T	0.273513	3E-9		0.0135609	[0.0091-0.018] unit decrease	NR [NR]	N
894	chr17	40542209	40542210	rs4796793	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	17q21.2	NR	rs4796793-C	0.748	8E-6		1.08	[NR]	Affymetrix [1623390] (imputed)	N
894	chr17	40542500	40542501	rs17405722	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q21.2	STAT3	rs17405722-A	0.0741526485278786	2E-9		0.087	[0.058-0.116] unit increase	NR [5035015] (imputed)	N
894	chr17	40543991	40543992	rs4796647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.2	NR	rs4796647-A	0.626825	1E-28				Affymetrix, Illumina [24246363] (imputed)	N
894	chr17	40543991	40543992	rs4796647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q21.2	NR	rs4796647-A	0.648656	1E-28		0.021155	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
894	chr17	40547326	40547327	rs2128786	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q21.2	STAT3, PTRF	rs2128786-C	0.353488	3E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
894	chr17	40561578	40561579	rs963986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.2	PTRF	rs963986-C	0.156917	7E-11		0.02021665	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr17	40561578	40561579	rs963986	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	17q21.2	PTRF, STAT3, STAT5A/B	rs963986-C	0.154	5E-9		1.15		Illumina [111236] (imputed)	N
894	chr17	40563105	40563106	rs111550283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.2	PTRF	rs111550283-A	0.157176	4E-12		0.021521056	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
894	chr17	40564783	40564784	rs7222712	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q21.2	NR	rs7222712-T	0.842129	1E-12		0.018802	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
894	chr17	40565034	40565035	rs56364076	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	17q21.2	PTRF, STAT3	rs56364076-C	0.313	6E-7		1.16	[1.09-1.23]	Illumina [up to 4778154] (imputed)	N
894	chr17	40567259	40567260	rs72823057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	PTRF	rs72823057-C	NR	2E-12		0.0379374	[0.027-0.048] unit increase	Affymetrix [319769] (imputed)	N
894	chr17	40567259	40567260	rs72823057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	PTRF	rs72823057-C	NR	5E-13		0.0387691	[0.028-0.049] unit increase	Affymetrix [319769] (imputed)	N
894	chr17	40567259	40567260	rs72823057	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs72823057-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
894	chr17	40569438	40569439	rs12938957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	17q21.2	PTRF	rs12938957-C	NR	6E-9		0.0222708	[0.015-0.03] unit decrease	Affymetrix [323858] (imputed)	N
894	chr17	40570771	40570772	rs11871801	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	17q21.2	STAT3, MLX	rs11871801-A	0.756	3E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [953241] (imputed)	N
894	chr17	40571283	40571284	rs8068844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.2		rs8068844-?	NR	2E-10				NR [~ 8900000] (imputed)	N
894	chr17	40578032	40578033	rs138672638	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.2	NR	rs138672638-C	0.0096	1E-8	(EA)	0.1833	[0.12-0.25] unit increase	Illumina [~ 11800000] (imputed)	N
894	chr17	40599557	40599558	rs62075804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs62075804-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
895	chr17	40635400	40635401	rs62075812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	ATP6V0A1	rs62075812-T	NR	2E-8		0.0200186	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
895	chr17	40635400	40635401	rs62075812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	ATP6V0A1	rs62075812-T	NR	1E-8		0.0202699	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
895	chr17	40644831	40644832	rs113339028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	ATP6V0A1	rs113339028-A	NR	8E-10		0.0586023	[0.04-0.077] unit increase	Affymetrix [319769] (imputed)	N
895	chr17	40644831	40644832	rs113339028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	ATP6V0A1	rs113339028-A	NR	4E-10		0.059637	[0.041-0.078] unit increase	Affymetrix [319769] (imputed)	N
895	chr17	40654523	40654524	rs68058972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.2		rs68058972-?	NR	3E-13				NR [~ 8900000] (imputed)	N
895	chr17	40679717	40679718	rs2006141	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q21.2	ATP6V0A1, NAGLU	rs2006141-T	0.72	4E-12				NR [> 9500000] (imputed)	N
895	chr17	40686341	40686342	rs4793090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q21.2		rs4793090-A	NR	9E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
895	chr17	40686341	40686342	rs4793090	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.2	NR	rs4793090-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
895	chr17	40686341	40686342	rs4793090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.2		rs4793090-A	0.6635	2E-8		0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
895	chr17	40692637	40692638	rs11871659	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	17q21.2	NR	rs11871659-C	0.03	5E-7		2.08	unit decrease	Illumina [8591557] (imputed)	N
895	chr17	40693343	40693344	rs630539	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.2	NAGLU	rs630539-C	0.0490585	5E-10		0.0265501	[0.018-0.035] unit decrease	NR [13737936] (imputed)	N
895	chr17	40693343	40693344	rs630539	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	17q21.2	NAGLU	rs630539-C		1E-6	(Trajectory class 5)	0.89	[0.56-1.22] unit increase	Illumina [at least 472049] (imputed)	N
895	chr17	40696914	40696915	rs684214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.2	RP11-400F19.8	rs684214-T	0.281521	2E-10		0.015802266	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
895	chr17	40696914	40696915	rs684214	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q21.2	NR	rs684214-C	0.7268	3E-16		0.0424	[0.032-0.053] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
895	chr17	40696914	40696915	rs684214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.2		rs684214-?	NR	2E-15				NR [~ 8900000] (imputed)	N
895	chr17	40698074	40698075	rs591939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.2	NAGLU	rs591939-A	0.751819	4E-15		0.0181582	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
895	chr17	40698074	40698075	rs591939	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q21.2	intergenic	rs591939-?	NR	1E-10		0.0196	[0.014-0.025] unit increase	Affymetrix [5701386] (imputed)	N
895	chr17	40698074	40698075	rs591939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q21.2	NR	rs591939-A	0.750939	9E-9		0.00722935	[0.0047-0.0098] unit increase	Affymetrix [16582621] (imputed)	N
895	chr17	40698074	40698075	rs591939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q21.2	NR	rs591939-A	0.750939	3E-11		0.00899707	[0.0063-0.0117] unit increase	Affymetrix [16582614] (imputed)	N
895	chr17	40698074	40698075	rs591939	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs591939-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
895	chr17	40698074	40698075	rs591939	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q21.2	NR	rs591939-G	0.2504	3E-11		0.019038517	[0.013-0.025] unit increase	Affymetrix [10549349] (imputed)	N
895	chr17	40698074	40698075	rs591939	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q21.2	NA	rs591939-A	0.7547	9E-15		0.0177	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
895	chr17	40698157	40698158	rs601999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	RP11-400F19.8	rs601999-T	NR	1E-13		0.022287	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
895	chr17	40698157	40698158	rs601999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	RP11-400F19.8	rs601999-T	NR	3E-13		0.0218669	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
895	chr17	40698157	40698158	rs601999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.2	RP11-400F19.8	rs601999-T	NR	8E-10		0.0186215	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
895	chr17	40698157	40698158	rs601999	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	17q21.2	HSD17B1, GLU	rs601999-?	NR	7E-8		1.095	[1.060-1.132]	Illumina [12438219] (imputed)	N
895	chr17	40701072	40701073	rs645692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q21.2		rs645692-T	NR	7E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
895	chr17	40701072	40701073	rs645692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q21.2		rs645692-T	NR	4E-12		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
895	chr17	40701072	40701073	rs645692	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q21.2	NR	rs645692-C	0.713056	5E-15		0.0174053	[0.013-0.022] unit decrease	NR [NR]	N
895	chr17	40706272	40706273	rs676387	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q21.2		rs676387-A	0.27	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
895	chr17	40706272	40706273	rs676387	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q21.2	NR	rs676387-A	0.2846	5E-10				NR [9056863] (imputed)	N
895	chr17	40706272	40706273	rs676387	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q21.2	NR	rs676387-C	0.6806	3E-24		0.0416	[0.034-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
895	chr17	40706272	40706273	rs676387	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	17q21.2	HSD17B1	rs676387-?	0.7126	1E-9		1.123343	[1.08-1.16]	Affymetrix [15688218] (imputed)	N
895	chr17	40706272	40706273	rs676387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q21.2	NA	rs676387-A	0.3	2E-7		0.0098	[0.0061-0.0135] unit increase	NR [~ 27400000] (imputed)	N
895	chr17	40709866	40709867	rs138643143	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.2	HSD17B1	rs138643143-A	0.0643	5E-14		0.4636	[0.34-0.58] mmHg increase	Affymetrix [NR] (imputed)	N
895	chr17	40709866	40709867	rs138643143	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.2	KCNH4, HSD17B1	rs138643143-A	0.07	3E-9		0.502	[0.35-0.66] unit increase	Affymetrix [~ 9800000] (imputed)	N
895	chr17	40713070	40713071	rs12945575	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	17q21.2		rs12945575-T	0.25	2E-16		0.018	mmol/L increase	NR [NR] (imputed)	N
895	chr17	40713070	40713071	rs12945575	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17q21.2		rs12945575-T	0.25	1E-14		0.016	nmol/L decrease	NR [NR] (imputed)	N
895	chr17	40713070	40713071	rs12945575	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q21.2		rs12945575-T	0.25	1E-10				NR [NR] (imputed)	N
895	chr17	40713070	40713071	rs12945575	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	17q21.2		rs12945575-T	0.25	2E-18		0.018	mmol/L decrease	NR [NR] (imputed)	N
895	chr17	40713070	40713071	rs12945575	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q21.2		rs12945575-T	0.25	4E-9		0.01	% increase	NR [NR] (imputed)	N
895	chr17	40713070	40713071	rs12945575	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17q21.2	COASY	rs12945575-T	0.25004	3E-9		0.044779	[0.03-0.06] unit increase	Affymetrix [9463307] (imputed)	N
895	chr17	40716234	40716235	rs668799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	17q21.2		rs668799-T	NR	8E-11		0.051	[0.036-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
895	chr17	40716234	40716235	rs668799	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	17q21.2	COASY	rs668799-T	0.277947	7E-9		0.075102694	[0.05-0.101] unit increase	Affymetrix [7288503] (imputed)	N
895	chr17	40716234	40716235	rs668799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.2		rs668799-?	NR	2E-7				NR [~ 8900000] (imputed)	N
895	chr17	40720631	40720632	rs646123	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Type 2 diabetes (time to event)	18,557 British ancestry cases, 264,314 British ancestry controls	NA	17q21.2	MLX	rs646123-?	NR	3E-8				NR [~ 24000000] (imputed)	N
895	chr17	40721041	40721042	rs650558	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q21.2		rs650558-T	0.23	2E-14		7.63	z score increase	Affymetrix [9061022] (imputed)	N
895	chr17	40721041	40721042	rs650558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	MLX	rs650558-T	NR	6E-9		0.0189777	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
895	chr17	40721041	40721042	rs650558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	MLX	rs650558-T	NR	9E-9		0.0187355	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
895	chr17	40721041	40721042	rs650558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q21.2	NR	rs650558-C	0.751635	2E-10		0.0215805	[0.015-0.028] unit increase	Affymetrix [16577313] (imputed)	N
895	chr17	40721041	40721042	rs650558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.2	NR	rs650558-C	0.751041	2E-14		0.00704302	[0.0052-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
895	chr17	40721041	40721042	rs650558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.2	NR	rs650558-C	0.751041	9E-19		0.00905609	[0.007-0.0111] unit increase	Affymetrix [16582965] (imputed)	N
895	chr17	40722028	40722029	rs665268	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	17q21.2	MLX	rs665268-G	0.47	2E-6		1.04	1.02-1.06	Illumina [12557761] (imputed)	N
895	chr17	40722028	40722029	rs665268	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	17q21.2	MLX	rs665268-G	0.294	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
895	chr17	40731410	40731411	rs34855406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.2	PSMC3IP	rs34855406-C	0.281431	6E-15		0.01918407	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
895	chr17	40731410	40731411	rs34855406	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q21.2	MLX	rs34855406-C	0.2772	2E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
895	chr17	40735640	40735641	rs10454087	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	17q21.2		rs10454087-C	0.715178	2E-8		0.012	[0.0081-0.0159] unit decrease	NR [7250403] (imputed)	N
895	chr17	40741012	40741013	rs12951632	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.2	RETREG3	rs12951632-T	0.7349	1E-9		0.0642	[0.043-0.085] unit increase	NR [7784415] (imputed)	N
895	chr17	40755810	40755811	rs9901225	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	17q21.2	PSMC3IP	rs9901225-T	0.55	1E-6	(same direction)	1.11	[1.06-1.16]	Illumina [up to 6000000] (imputed)	N
895	chr17	40756881	40756882	rs76189032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.2	NR	rs76189032-T	NR	5E-10		0.0276	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
895	chr17	40756881	40756882	rs76189032	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q21.2	NR	rs76189032-T	0.0769	1E-14		0.0285	[0.021-0.036] unit increase	NR [~ 27400000] (imputed)	N
896	chr17	40768628	40768629	rs74322397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q21.2		rs74322397-T	NR	2E-12		0.0465	[0.034-0.059] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
896	chr17	40771993	40771994	rs1024091	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.2	NR	rs1024091-T	0.546219	6E-10				Affymetrix, Illumina [23472807] (imputed)	N
896	chr17	40772287	40772288	rs35635959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q21.2		rs35635959-C	NR	2E-18		0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
896	chr17	40777547	40777548	rs3067941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q21.2		rs3067941-A	NR	2E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
896	chr17	40781560	40781561	rs34138141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q21.2		rs34138141-T	NR	9E-14		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
896	chr17	40781560	40781561	rs34138141	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.2	TUBG1	rs34138141-G	0.719342	2E-16		0.0175419	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
896	chr17	40781560	40781561	rs34138141	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q21.2	TUBG1	rs34138141-G	0.719324	1E-16		0.0180979	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
896	chr17	40812797	40812797	rs3835175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.2		rs3835175-CT	NR	1E-12		0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
896	chr17	40818583	40818584	rs2292749	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		STAT3	rs2292749-T	NR	2E-9		1.07	NR	NR [8016731] (imputed)	N
896	chr17	40819808	40819809	rs2279844	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	17q21.2	PLEKHH3, TUBG2	rs2279844-G	0.6174	2E-6		0.0074	[0.0043-0.0105] unit increase	Affymetrix [~ 7740000] (imputed)	N
896	chr17	40824338	40824339	rs200210041	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	17q21.2	PLEKHH3	rs200210041-G	0.986	3E-8		1.291322	[1.188811-1.402672]	Affymetrix [NR] (imputed)	N
896	chr17	40836388	40836389	rs72826962	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.2	CNTNAP1	rs72826962-T	0.01	5E-9	(EA)	1.2	[1.11-1.3] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
896	chr17	40841905	40841906	rs3760385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	CNTNAP1, CTD-3193K9.3	rs3760385-A	NR	9E-9		0.0164925	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
896	chr17	40841905	40841906	rs3760385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	CNTNAP1, CTD-3193K9.3	rs3760385-A	NR	1E-8		0.0163904	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
896	chr17	40843979	40843980	rs142029931	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	17q21.2	CNTNAP1	rs142029931-?	NR	1E-6				Illumina [83898]	N
896	chr17	40853122	40853123	rs745468425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q21.2	NR	rs745468425-T	3.12E-4	7E-13		0.524646	[0.38-0.67] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
896	chr17	40863691	40863692	rs1542924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.2		rs1542924-?	NR	4E-9				NR [~ 8900000] (imputed)	N
896	chr17	40873302	40873303	rs4792953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.2	NR	rs4792953-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
896	chr17	40873302	40873303	rs4792953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.2		rs4792953-?	NR	8E-24				NR [~ 8900000] (imputed)	N
897	chr17	40896076	40896077	rs7215553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	EZH1	rs7215553-T	NR	2E-13		0.0207744	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
897	chr17	40896076	40896077	rs7215553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.2	EZH1	rs7215553-T	NR	4E-10		0.0178648	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
897	chr17	40901823	40901824	rs752313	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	HMGN2P15	rs752313-T	NR	5E-13		0.0205072	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
897	chr17	40901823	40901824	rs752313	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.2	EZH1, RAMP2-AS1	rs752313-?	NR	4E-12		0.019981401	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
897	chr17	40905382	40905383	rs9905939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.2		rs9905939-C	0.445341	1E-12		0.0144998	[0.011-0.018] unit increase	Illumina [13479295] (imputed)	N
897	chr17	40913365	40913366	rs9892728	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	17q21.2	NR	rs9892728-C	0.4717	9E-9		0.0536	[0.035-0.072] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
897	chr17	40913365	40913366	rs9892728	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	17q21.2		rs9892728-T	0.531095537	2E-8		0.9503636	[0.93365308-0.967373215]	Illumina [8919992] (imputed)	N
897	chr17	40913365	40913366	rs9892728	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	17q21.2	MLX	rs9892728-C	0.47	4E-8		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
897	chr17	40913365	40913366	rs9892728	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q21.2	NR	rs9892728-T	0.4506	2E-11		0.0133	[0.0094-0.0172] unit increase	NR [~ 27400000] (imputed)	N
897	chr17	40919452	40919453	rs55999482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	RAMP2	rs55999482-A	NR	5E-14		0.0239983	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
897	chr17	40919452	40919453	rs55999482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	RAMP2	rs55999482-A	NR	5E-14		0.0239938	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
897	chr17	40919452	40919453	rs55999482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.2	RAMP2	rs55999482-A	NR	3E-9		0.019138	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
897	chr17	40919595	40919596	rs56228409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.2	RAMP2	rs56228409-C	NR	2E-9		0.0235882	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
897	chr17	40919595	40919596	rs56228409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.2	RAMP2	rs56228409-C	NR	2E-9		0.0235401	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
897	chr17	40919595	40919596	rs56228409	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q21.2	RAMP2	rs56228409-A	0.8456	2E-16		0.2027	[0.15-0.25] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
897	chr17	40940578	40940579	rs61755606	34413389	Ruggiero D	2021-08-19	Sci Rep	Genetics of PlGF plasma levels highlights a role of its receptors and supports the link between angiogenesis and immunity.	Placenta growth factor levels	1,600 European ancestry individuals	468 European ancestry individuals	17q21.2		rs61755606-A	0.11	5E-7		0.034	[0.02-0.048] unit increase	Illumina [8281256] (imputed)	N
897	chr17	40959293	40959294	rs151329939	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs151329939-A	0.01	5E-9	(EA)	0.1879	[0.12-0.25] unit increase	Illumina [~ 11800000] (imputed)	N
897	chr17	40960252	40960253	rs1011157	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.31	NR	rs1011157-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
897	chr17	40963903	40963904	rs10512488	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	17q21.31	BECN1, CNTD1, MIR6781	rs10512488-?	NR	3E-6	(Celtic)			Affymetrix [5045527] (imputed)	N
897	chr17	40985647	40985648	rs139945697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.31		rs139945697-?	NR	4E-8				NR [~ 8900000] (imputed)	N
897	chr17	40989001	40989002	rs56017239	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs56017239-A	0.963618	4E-8		0.0605977	[0.039-0.082] unit decrease	NR [11722792] (imputed)	N
897	chr17	40996655	40996656	rs34230945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs34230945-G	0.02613	3E-8	(ORM1)	0.5767	NR unit increase	Illumina [1671387] (imputed)	N
897	chr17	40996655	40996656	rs34230945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs34230945-G	0.02613	2E-8	(HP)	3.4	NR unit increase	Illumina [1671387] (imputed)	N
898	chr17	41029544	41029545	rs56400600	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.31	NR	rs56400600-A	NR	2E-9		0.0378	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
898	chr17	41052816	41052817	rs145752565	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs145752565-A	0.01394	9E-10	(HP)	4.958	NR unit increase	Illumina [1671387] (imputed)	N
898	chr17	41052816	41052817	rs145752565	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs145752565-A	0.01394	1E-10	(EMILIN2)	0.1463	NR unit increase	Illumina [1671387] (imputed)	N
898	chr17	41055351	41055352	rs112269770	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		G6PC	rs112269770-?	NR	9E-10		1.5832	[NR] unit decrease	Affymetrix [NR] (imputed)	N
898	chr17	41063407	41063408	rs80356487	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	17q21.31		rs80356487-?	NR	6E-10		0.307842	[0.2-0.41] unit increase	NR [9800000] (imputed)	N
898	chr17	41063407	41063408	rs80356487	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	17q21.31		rs80356487-?	NR	4E-8		0.280847	[0.18-0.39] unit increase	NR [9800000] (imputed)	N
898	chr17	41063407	41063408	rs80356487	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	17q21.31		rs80356487-?	NR	3E-11		0.349922	[0.24-0.46] unit increase	NR [9800000] (imputed)	N
898	chr17	41080194	41080195	rs8081535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.31	RNY4P2	rs8081535-A	0.435711	1E-11		0.015857823	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
898	chr17	41080194	41080195	rs8081535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.31	RNY4P2	rs8081535-A	0.435743	2E-11		0.015724085	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
898	chr17	41085682	41085683	rs2670854	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q21.31	NA	rs2670854-A	0.7227	2E-9		0.0111	[0.0074-0.0148] unit increase	NR [~ 27400000] (imputed)	N
898	chr17	41086679	41086682	rs143487542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q21.31		rs143487542-A	NR	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
898	chr17	41119568	41119569	rs188757965	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q21.31	NR	rs188757965-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947713	9E-9		0.0523711	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947748	3E-8		0.0499558	[0.032-0.068] unit decrease	NR [11722792] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947748	3E-8		0.0499822	[0.032-0.068] unit decrease	NR [11722792] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947755	4E-8		0.0497368	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947713	4E-9		0.0536107	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
899	chr17	41163973	41163974	rs111351217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs111351217-G	0.947713	2E-8		0.0504501	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
899	chr17	41167956	41167957	rs455055	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q21.31		rs455055-A	NR	7E-9		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
899	chr17	41169599	41169601	rs55979457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.31	VAT1	rs55979457-C	0.838702	2E-10		0.020033112	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
899	chr17	41172480	41172481	rs28678167	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q21.31	NR	rs28678167-T	NR	2E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
899	chr17	41172480	41172481	rs28678167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs28678167-T	0.309506	2E-17				Affymetrix, Illumina [24649327] (imputed)	N
899	chr17	41172480	41172481	rs28678167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q21.31	NR	rs28678167-T	0.320495	1E-19		0.018185	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
899	chr17	41172480	41172481	rs28678167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs28678167-T	0.315597	7E-21				Affymetrix, Illumina [23114412] (imputed)	N
899	chr17	41172480	41172481	rs28678167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.31	NR	rs28678167-T	0.319886	3E-24		0.021191	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
899	chr17	41172480	41172481	rs28678167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs28678167-?	NR	1E-13				NR [~ 8900000] (imputed)	N
899	chr17	41172906	41172907	rs12950717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.31	VAT1	rs12950717-G	0.307002	1E-12		0.017364329	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr17	41173085	41173086	rs9912587	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.31	IFI35, RND2, VAT1	rs9912587-A	0.177	6E-7		0.043	[0.025-0.061] unit increase	Affymetrix [7947838] (imputed)	N
899	chr17	41173225	41173226	rs9915489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17q21.31		rs9915489-?	NR	7E-21				NR [~ 8900000] (imputed)	N
899	chr17	41200106	41200107	rs567534295	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q21.31	BRCA1	rs567534295-?		5E-8		1.19	[1.12-1.26]	Illumina [7645193] (imputed)	N
899	chr17	41200106	41200107	rs567534295	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q21.31	BRCA1	rs567534295-?		3E-8		4.75	[2.73-8.24]	Illumina [7645193] (imputed)	N
899	chr17	41210395	41210396	rs8176279	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q21.31	BRCA1	rs8176279-C	0.34	1E-12		7.08	z-score increase	Affymetrix [4314223] (imputed)	N
899	chr17	41220287	41220288	rs8176229	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.31	NR	rs8176229-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
899	chr17	41225654	41225655	rs5820482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.31	BRCA1	rs5820482-T	0.125471	1E-10		0.022113362	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
899	chr17	41240276	41240277	rs8176166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs8176166-?	NR	2E-8				NR [~ 8900000] (imputed)	N
899	chr17	41240276	41240277	rs8176166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.31		rs8176166-?	NR	4E-8				NR [~ 8900000] (imputed)	N
899	chr17	41243999	41244000	rs16942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q21.31	NR	rs16942-C	NR	1E-12		0.0181	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
899	chr17	41245465	41245466	rs1799949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q21.31	NR	rs1799949-A	NR	4E-13		0.0185	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
899	chr17	41245465	41245466	rs1799949	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	17q21.31	NR	rs1799949-G	0.6614	3E-8	(japanese)	0.152	[0.099-0.205] year decrease	Illumina [at least 532488] (imputed)	N
899	chr17	41245465	41245466	rs1799949	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	17q21.31	BRCA1	rs1799949-G	0.68	8E-11		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
899	chr17	41245551	41245552	rs80357922	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	17q21.31		rs80357922-?	NR	5E-7				Affymetrix [810906]	N
899	chr17	41258219	41258220	rs189352191	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STAT3	5,359 Icelandic ancestry individuals	NA	17q21.31		rs189352191-T	0.0114	4E-13		0.622152	[0.45-0.79] unit decrease	Illumina [7506463] (imputed)	N
899	chr17	41278005	41278005	rs8176071	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	17q21.31	BRCA1	rs8176071-GTGT	0.34	1E-8	(japanese)	0.16	[0.1-0.22] year increase	Illumina [at least 532488] (imputed)	N
900	chr17	41297755	41297760	rs199625942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q21.31		rs199625942-C	NR	4E-15		0.0409	[0.031-0.051] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
900	chr17	41377409	41377410	rs149153680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs149153680-?	NR	2E-11				NR [~ 8900000] (imputed)	N
900	chr17	41388249	41388250	rs112381903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.31	LINC00854	rs112381903-T	0.067688	2E-13		0.0327209	[0.024-0.041] unit increase	Affymetrix [93095623] (imputed)	N
900	chr17	41402019	41402020	rs74252763	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.31	TMEM106A	rs74252763-C	0.73546875	9E-8	(TMEM106A, 10499_1_3)	0.15106547	[0.096-0.206] unit increase	Illumina [> 1000000] (imputed)	N
900	chr17	41409141	41409141	rs549175393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q21.31		rs549175393-CAAAAAA	NR	3E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
901	chr17	41437019	41437020	rs9904639	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs9904639-?	NR	2E-12		0.021932	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
901	chr17	41456412	41456413	rs56799554	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q21.31	NR	rs56799554-G	0.1971	4E-11		0.0327	[0.023-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
901	chr17	41469456	41469457	rs113905686	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.31	NR	rs113905686-C	NR	3E-9		0.0295	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
901	chr17	41472563	41472564	rs80084595	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs80084595-T	0.01568	3E-13	(DHRS4)	0.3187	NR unit increase	Illumina [1671387] (imputed)	N
901	chr17	41487404	41487405	rs111563093	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs111563093-G	0.01045	3E-9	(CAPN2)	0.06014	NR unit increase	Illumina [1671387] (imputed)	N
901	chr17	41487404	41487405	rs111563093	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs111563093-G	0.01045	2E-8	(CAPNS1)	0.0291	NR unit increase	Illumina [1671387] (imputed)	N
901	chr17	41520199	41520200	rs7207025	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		MIR2117HG	rs7207025-A	NR	8E-10		0.98	[0.97-0.99]	Affymetrix [9869154] (imputed)	N
902	chr17	41571267	41571268	rs75543966	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q21.31	DHX8	rs75543966-?	NR	1E-13	(EA)	0.04906	[0.035-0.063] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
902	chr17	41616455	41616456	rs7222604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs7222604-?	NR	8E-9				NR [~ 8900000] (imputed)	N
902	chr17	41629648	41629649	rs28513436	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	17q21.31	intergenic	rs28513436-T	NR	4E-6		0.285084	[0.16-0.41] unit decrease	Illumina [7433384] (imputed)	N
902	chr17	41660080	41660081	rs4792901	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	17q21.31	NR	rs4792901-?	0.69	3E-6		1.1198208	[1.07-1.18]	Illumina [238825]	N
903	chr17	41682982	41682983	rs12603963	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	RF00017	rs12603963-T	0.6303	4E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix [18391927] (imputed)	N
903	chr17	41717426	41717427	rs55674920	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	17q21.31		rs55674920-G	0.84	6E-10		1.22		NR [NR] (imputed)	N
903	chr17	41773813	41773814	rs1107748	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	17q21.31	SOST	rs1107748-C	0.0362	1E-6		0.063	[NR] unit increase	Illumina [19689642] (imputed)	N
903	chr17	41776942	41776943	rs76868109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.31	NR	rs76868109-C	NR	8E-67		0.113	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
903	chr17	41776942	41776943	rs76868109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.31	NR	rs76868109-C	NR	2E-95		0.1416	[0.13-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
903	chr17	41776942	41776943	rs76868109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q21.31	NR	rs76868109-C	NR	1E-63		0.1155	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
903	chr17	41780483	41780484	rs9911277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	17q21.31		rs9911277-A	NR	3E-9		0.0737	[0.049-0.098] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
903	chr17	41789964	41789965	rs7220711	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	17q21.31	SOST	rs7220711-G	0.0368	3E-6		0.063	[NR] unit increase	Illumina [19689642] (imputed)	N
903	chr17	41789964	41789965	rs7220711	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	17q21.31	SOST	rs7220711-G	0.0368	4E-8		0.071	[NR] unit increase	Illumina [19689642] (imputed)	N
903	chr17	41796405	41796406	rs7209826	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs7209826-?	NR	6E-95		0.0422531	[0.038-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr17	41796405	41796406	rs7209826	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs7209826-A	0.6168	8E-13	(men)	0.0378094	[0.027-0.048] unit decrease	NR [17166351] (imputed)	N
903	chr17	41796405	41796406	rs7209826	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs7209826-A	0.616614	2E-36		0.0423027	[0.035-0.049] unit decrease	NR [17166351] (imputed)	N
903	chr17	41796405	41796406	rs7209826	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs7209826-A	0.616451	2E-24	(women)	0.0468122	[0.037-0.056] unit decrease	NR [17166351] (imputed)	N
903	chr17	41798193	41798194	rs188810925	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs188810925-?	NR	4E-94		0.0778573	[0.07-0.086] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr17	41798193	41798194	rs188810925	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs188810925-G	0.922742	2E-8	(men)	0.0558516	[0.036-0.075] unit decrease	NR [17166351] (imputed)	N
903	chr17	41798193	41798194	rs188810925	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs188810925-G	0.922131	1E-26		0.0668749	[0.054-0.08] unit decrease	NR [17166351] (imputed)	N
903	chr17	41798193	41798194	rs188810925	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	SOST	rs188810925-G	0.921598	1E-18	(women)	0.0753801	[0.058-0.093] unit decrease	NR [17166351] (imputed)	N
903	chr17	41798620	41798621	rs66838809	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs66838809-A	0.0808	2E-18	(European)	0.109	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
903	chr17	41798823	41798824	rs4792909	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	SOST	rs4792909-T	0.37	2E-11		0.04	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
903	chr17	41798854	41798855	rs4793022	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	17q21.31	SOST	rs4793022-G	0.6095999999999999	5E-41		0.0412	[0.035-0.047] unit increase	NR [13977204] (imputed)	N
903	chr17	41801245	41801246	rs7217502	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	SOST	rs7217502-A	0.618671	1E-29		0.0237544	[0.02-0.028] unit decrease	NR [13737936] (imputed)	N
903	chr17	41801245	41801246	rs7217502	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs7217502-?	NR	2E-96		0.0427433	[0.038-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr17	41807330	41807331	rs1513670	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	17q21.31	SOST	rs1513670-T	0.0368	1E-6		0.062	[NR] unit decrease	Illumina [19689642] (imputed)	N
903	chr17	41807330	41807331	rs1513670	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	17q21.31	SOST	rs1513670-A	0.37	2E-8		0.08	[0.05-0.10] s.d. decrease	Illumina [305051]	N
903	chr17	41807507	41807508	rs76410205	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	17q21.31	NR	rs76410205-T	0.096	1E-9		0.111	[0.076-0.146] SD units increase	Illumina [11603265] (imputed)	N
903	chr17	41807507	41807508	rs76410205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs76410205-?	NR	1E-23				NR [~ 8900000] (imputed)	N
903	chr17	41809206	41809207	rs145947882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.31		rs145947882-C	0.026132	6E-11		0.04608448	[0.032-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr17	41809206	41809207	rs145947882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs145947882-C	0.025485	3E-18				Affymetrix, Illumina [19872809] (imputed)	N
903	chr17	41809206	41809207	rs145947882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.31	NR	rs145947882-C	0.0263	3E-21		0.059933	[0.048-0.072] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
904	chr17	41818952	41818953	rs35590725	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs35590725-?	NR	4E-45		0.0290741	[0.025-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
904	chr17	41819561	41819562	rs144691710	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs144691710-A	0.9249	2E-19		0.1017	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
904	chr17	41826838	41826839	rs2741856	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	17q21.31	NR	rs2741856-?	0.904400065541267	1E-9		0.111094855	[0.075-0.147] SD units decrease	Illumina [11603265] (imputed)	N
904	chr17	41826838	41826839	rs2741856	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	SOST	rs2741856-G	0.91632	3E-60		0.0590475	[0.052-0.066] unit decrease	NR [13737936] (imputed)	N
904	chr17	41826838	41826839	rs2741856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs2741856-?	NR	2E-105				NR [~ 8900000] (imputed)	N
904	chr17	41826838	41826839	rs2741856	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	17q21.31	SOST, DUSP3, MEOX1	rs2741856-G	0.92	3E-25		1.1	[1.07-1.11]	Affymetrix, Illumina [2539801] (imputed)	N
904	chr17	41826838	41826839	rs2741856	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs2741856-?	NR	2E-104		0.0794023	[0.072-0.087] unit decrease	Affymetrix [20259828] (imputed)	N
904	chr17	41826838	41826839	rs2741856	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	17q21.31	SOST	rs2741856-C	0.080564	5E-9		0.0898	[0.06-0.12] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
904	chr17	41826838	41826839	rs2741856	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	17q21.31	SOST	rs2741856-C	0.080564	3E-11		0.0895	[0.063-0.116] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
904	chr17	41826838	41826839	rs2741856	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	17q21.31	NR	rs2741856-C	0.0764	7E-13		0.1391	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
904	chr17	41826838	41826839	rs2741856	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.31	DUSP3	rs2741856-?	NR	8E-6	(LPE 20:4)	0.33027282	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
904	chr17	41837263	41837264	rs851057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs851057-?	NR	2E-13				NR [~ 8900000] (imputed)	N
904	chr17	41840848	41840849	rs77697917	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs77697917-C	0.971277	3E-8		0.0669741	[0.043-0.091] unit decrease	NR [11722792] (imputed)	N
904	chr17	41840848	41840849	rs77697917	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.31	SOST, DUSP3	rs77697917-?		2E-41		0.2683	[0.23-0.31] unit increase	Illumina [31500000] (imputed)	N
904	chr17	41840848	41840849	rs77697917	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.31	NR	rs77697917-C	NR	2E-35		0.153	unit decrease	Affymetrix [at least 7091467] (imputed)	N
904	chr17	41840848	41840849	rs77697917	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.31	NR	rs77697917-C	0.972	4E-33	(EA)	0.153	unit decrease	Affymetrix [at least 7091467] (imputed)	N
904	chr17	41840848	41840849	rs77697917	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.31	NR	rs77697917-C	NR	2E-42		0.154	unit increase	Affymetrix [at least 7091467] (imputed)	N
904	chr17	41840848	41840849	rs77697917	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.31	NR	rs77697917-C	0.972	2E-39	(EA)	0.152	unit increase	Affymetrix [at least 7091467] (imputed)	N
904	chr17	41840848	41840849	rs77697917	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q21.31	SOST	rs77697917-T	0.0286	8E-10		0.06580746	[0.045-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr17	41840848	41840849	rs77697917	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q21.31	SOST	rs77697917-T	0.0286	2E-10		0.06810945	[0.047-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
904	chr17	41840848	41840849	rs77697917	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	HDL cholesterol	50,823 European ancestry individuals, 703 East Asian ancestry individuals, 6,476 African American individuals, 1,407 Hispanic individuals	71,921 European ancestry individuals, 9,992 Indian Asian ancestry individuals, 2,685 African American/Afro-Caribbean individuals	17q21.31	SOST, DUSP3	rs77697917-T	0.03	1E-11		0.241	[0.17-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41840848	41840849	rs77697917	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	17q21.31	SOST, DUSP3	rs77697917-T	0.03	8E-13		0.163	[0.12-0.21] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
904	chr17	41840848	41840849	rs77697917	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	17q21.31	SOST, DUSP3	rs77697917-C	0.97	1E-14		0.176	[0.13-0.22] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
904	chr17	41858622	41858623	rs71382995	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	17q21.31	SOST	rs71382995-A	0.0956	6E-9		0.112	(0.074-0.149) unit increase	Illumina [19689642] (imputed)	N
904	chr17	41858622	41858623	rs71382995	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	17q21.31	SOST	rs71382995-A	0.0956	5E-10		0.116	(0.08-0.153) unit increase	Illumina [19689642] (imputed)	N
904	chr17	41859647	41859648	rs61629263	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	17q21.31	NR	rs61629263-G	0.2818	3E-6		0.1554	[0.09-0.22] unit decrease	Illumina [10677593] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	1E-27		0.131423	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	6E-10		0.0750148	[0.051-0.099] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	2E-29		0.134631	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	3E-13		0.089155	[0.065-0.113] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	2E-11		0.0831778	[0.059-0.107] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	7E-28		0.131114	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	8E-18		0.104522	[0.081-0.128] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	2E-13		0.090175	[0.066-0.114] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971387	3E-8		0.0679321	[0.044-0.092] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971368	1E-13		0.0889537	[0.065-0.113] unit increase	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	4E-11		0.0812179	[0.057-0.105] unit increase	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	3E-10		0.077626	[0.054-0.102] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	8E-16		0.0984155	[0.074-0.122] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	1E-8		0.0699058	[0.046-0.094] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971391	5E-17		0.0995733	[0.076-0.123] unit increase	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	3E-18		0.106222	[0.082-0.13] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971391	1E-11		0.0825733	[0.059-0.106] unit increase	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs112259268-C	0.971385	2E-21		0.115362	[0.092-0.139] unit decrease	NR [11722792] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	8E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	5E-21				Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	7E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	1E-22				Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	2E-8		0.063	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	2E-7	(EA)	0.061	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	9E-34				Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	7E-31	(EA)			Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	3E-36	(EA)			Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.31	C17orf105, MPP3	rs112259268-A	NR	1E-41				Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	4E-12	(EA)	0.035	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	2E-13		0.036	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	9E-9	(EA)	0.03489	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q21.31	C17orf105, MPP3	rs112259268-A	NR	2E-10		0.03561	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs112259268-?	NR	6E-11				NR [~ 8900000] (imputed)	N
904	chr17	41874744	41874745	rs112259268	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q21.31	intergenic	rs112259268-A	0.0275	1E-11		0.0632	[0.045-0.081] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
904	chr17	41878165	41878166	rs8077889	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.31	MPP3	rs8077889-C	0.22	1E-8		0.025	[NR] mg/dL increase	NR [NR] (imputed)	N
904	chr17	41904371	41904372	rs12950756	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs12950756-T	0.9265	4E-15	(European)	0.0983	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
904	chr17	41912143	41912144	rs28694735	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q21.31	NR	rs28694735-G	0.214	2E-8		0.00766934	[0.005-0.0103] unit decrease	NR [9732723] (imputed)	N
904	chr17	41920652	41920653	rs56176358	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q21.31	Intergenic	rs56176358-T	NR	6E-7	(between families)	5.004	unit increase	Affymetrix [up to 15107142] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-29		0.126644	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968509	9E-14		0.0852685	[0.063-0.108] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968533	3E-31		0.129208	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-33		0.136706	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-25		0.118084	[0.096-0.14] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-43		0.154601	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-37		0.143096	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-14		0.0874879	[0.065-0.11] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-42		0.154258	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-16		0.094459	[0.072-0.117] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-49		0.163888	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-25		0.118427	[0.096-0.141] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	7E-12		0.0790265	[0.056-0.102] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-27		0.123084	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-31		0.133401	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-17		0.0970775	[0.075-0.12] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-23		0.112128	[0.09-0.135] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	7E-10		0.0715882	[0.049-0.094] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	7E-19		0.101187	[0.079-0.124] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-27		0.122979	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-13		0.0826399	[0.06-0.105] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-24		0.116092	[0.094-0.138] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-10		0.071844	[0.05-0.094] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	7E-26		0.119593	[0.097-0.142] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-20		0.0979738	[0.077-0.119] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-30		0.125536	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-40		0.138256	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	6E-21		0.106939	[0.085-0.129] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-14		0.0866469	[0.064-0.109] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-37		0.135357	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-14		0.0850539	[0.063-0.107] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-27		0.119999	[0.098-0.142] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	7E-15		0.086474	[0.065-0.108] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-11		0.0764572	[0.054-0.099] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	1E-20		0.103014	[0.081-0.125] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	4E-51		0.164938	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	2E-14		0.0873155	[0.065-0.11] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	5E-21		0.10669	[0.084-0.129] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	2E-13		0.0837853	[0.062-0.106] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	5E-25		0.117198	[0.095-0.139] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	6E-11		0.0747647	[0.052-0.097] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-9		0.0698719	[0.047-0.093] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-26		0.121593	[0.099-0.144] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968533	1E-13		0.0804016	[0.059-0.102] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	7E-37		0.142856	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-8		0.0655778	[0.042-0.089] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-28		0.125137	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-28		0.123815	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968524	9E-10		0.0702562	[0.048-0.093] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-10		0.0747146	[0.051-0.098] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-25		0.118089	[0.096-0.14] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-19		0.0960033	[0.075-0.117] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-25		0.115762	[0.094-0.137] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-27		0.1243	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-40		0.138623	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-23		0.113748	[0.092-0.136] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-12		0.0791766	[0.057-0.102] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-33		0.128526	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	4E-12		0.0775102	[0.056-0.099] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	1E-15		0.0883146	[0.067-0.11] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-49		0.156257	[0.14-0.18] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968533	4E-24		0.106071	[0.086-0.127] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	8E-37		0.142483	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-25		0.118812	[0.096-0.141] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-31		0.131093	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-29		0.126937	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-41		0.140843	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-30		0.12824	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-21		0.103937	[0.082-0.125] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-24		0.115656	[0.093-0.138] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-12		0.0763793	[0.055-0.098] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-8		0.0657839	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-36		0.135899	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-26		0.122125	[0.1-0.145] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-11		0.0788612	[0.056-0.102] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-39		0.136505	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-22		0.110419	[0.088-0.133] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-9		0.0691002	[0.046-0.092] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-17		0.095145	[0.073-0.118] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	6E-40		0.138482	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	2E-8		0.06284	[0.041-0.085] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968519	5E-17		0.0941144	[0.072-0.116] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	8E-27		0.121673	[0.099-0.144] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-17		0.0886064	[0.068-0.109] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-33		0.1308	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-28		0.12522	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-38		0.133901	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-22		0.110482	[0.088-0.133] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-30		0.125781	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-36		0.140124	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968509	2E-18		0.0992008	[0.077-0.121] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968533	2E-17		0.0998802	[0.077-0.123] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-20		0.107328	[0.084-0.13] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-10		0.0744805	[0.051-0.098] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-10		0.073853	[0.051-0.096] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-41		0.148868	[0.13-0.17] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-14		0.0892611	[0.066-0.112] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-31		0.132705	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	6E-26		0.118473	[0.096-0.141] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-22		0.11099	[0.088-0.134] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-10		0.0709216	[0.049-0.093] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-27		0.114761	[0.094-0.136] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-12		0.082382	[0.059-0.106] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-43		0.150507	[0.13-0.17] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	6E-19		0.103838	[0.081-0.127] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-43		0.144415	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-25		0.119438	[0.097-0.142] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-17		0.0977765	[0.075-0.12] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	8E-51		0.159255	[0.14-0.18] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-33		0.133892	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968509	4E-18		0.0980476	[0.076-0.12] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-30		0.130794	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-14		0.0884146	[0.066-0.111] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	4E-39		0.145417	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-39		0.148185	[0.13-0.17] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-12		0.0816913	[0.059-0.104] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-29		0.125163	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-25		0.119463	[0.097-0.142] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-23		0.107134	[0.086-0.128] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	6E-12		0.0812477	[0.058-0.104] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-42		0.148402	[0.13-0.17] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-23		0.114657	[0.092-0.137] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	5E-43		0.143327	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	2E-24		0.116115	[0.094-0.138] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-17		0.0976242	[0.075-0.12] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-37		0.141288	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	1E-17		0.0987203	[0.076-0.121] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	9E-30		0.118689	[0.098-0.139] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q21.31		rs72836561-C	0.968518	3E-32		0.127772	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
904	chr17	41926125	41926126	rs72836561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q21.31		rs72836561-T	NR	2E-101		0.1412	[0.13-0.15] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
904	chr17	41926125	41926126	rs72836561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q21.31		rs72836561-T	NR	6E-12		0.0454	[0.032-0.058] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
904	chr17	41926125	41926126	rs72836561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q21.31		rs72836561-T	NR	5E-8		0.0369	[0.024-0.05] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
904	chr17	41926125	41926126	rs72836561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q21.31		rs72836561-T	NR	2E-152		0.1703	[0.16-0.18] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
904	chr17	41926125	41926126	rs72836561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q21.31		rs72836561-T	NR	2E-14		0.0382	[0.028-0.048] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
904	chr17	41926125	41926126	rs72836561	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.31	CD300LG	rs72836561-?		2E-12		0.1241	[0.089-0.159] unit decrease	Illumina [31500000] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	CD300LG	rs72836561-T	0.03132	9E-16		0.051155232	[0.039-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.31	CD300LG	rs72836561-T	0.031307	6E-11		0.04164889	[0.029-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.31	CD300LG	rs72836561-T	0.031305	2E-16		0.052177113	[0.04-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.31	CD300LG	rs72836561-C	0.968813	2E-126		0.137064	[0.13-0.15] unit decrease	Affymetrix [NR] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.31	CD300LG	rs72836561-C	0.968734	2E-212		0.170535	[0.16-0.18] unit increase	Affymetrix [NR] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q21.31	CD300LG	rs72836561-C	0.968695	5E-140		0.14208	[0.13-0.15] unit increase	Affymetrix [NR] (imputed)	N
904	chr17	41926125	41926126	rs72836561	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q21.31	CD300LG	rs72836561-?	NR	1E-84		0.1452	[0.13-0.16] unit increase	Affymetrix [5701386] (imputed)	N
904	chr17	41926125	41926126	rs72836561	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17q21.31	CD300LG	rs72836561-T	0.0322648	5E-43		0.23953	[0.21-0.27] unit increase	Affymetrix [9463307] (imputed)	N
904	chr17	41926125	41926126	rs72836561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs72836561-?	NR	4E-10				NR [~ 8900000] (imputed)	N
904	chr17	41926125	41926126	rs72836561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs72836561-?	NR	8E-22				NR [~ 8900000] (imputed)	N
904	chr17	41926125	41926126	rs72836561	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q21.31	CD300LG	rs72836561-T	0.0288	8E-84		0.1636	[0.15-0.18] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
904	chr17	41926125	41926126	rs72836561	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q21.31	CD300LG	rs72836561-T	0.029	1E-123		0.1987	[0.18-0.22] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
904	chr17	41926125	41926126	rs72836561	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	17q21.31	CD300LG	rs72836561-T	0.0294	2E-11		0.23653477	[0.17-0.31] mg/dl decrease	Illumina [24111857] (imputed)	N
905	chr17	41943619	41943620	rs780965626	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.31		rs780965626-C	0.24555	1E-8		0.0288912	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
905	chr17	41943619	41943620	rs780965626	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17q21.31		rs780965626-C	0.24555	9E-9		0.0289261	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
905	chr17	41959540	41959541	rs74636831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs74636831-?	NR	1E-9				NR [~ 8900000] (imputed)	N
905	chr17	41965199	41965200	rs231513	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	17q21.31	MPP2	rs231513-C	0.1384	8E-6	(Phonemic Fluency)	4.3471	[2.45-6.24] unit increase	Affymetrix [> 371951] (imputed)	N
905	chr17	41993872	41993873	rs72836588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.31	NR	rs72836588-T	NR	9E-12		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr17	41993872	41993873	rs72836588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.31	NR	rs72836588-T	NR	2E-10		0.0225	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
905	chr17	42028988	42028989	rs8074783	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.31	PYY	rs8074783-C	0.64078125	1E-9	(PYY, 3727_35_1)	0.1569401	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
905	chr17	42029875	42029876	rs116953263	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs116953263-T	0.0457	2E-9	(European)	0.0916	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
905	chr17	42031769	42031770	rs116878033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.31	PYY	rs116878033-C	0.962293	1E-15		0.0425113	[0.032-0.053] unit decrease	Affymetrix [NR] (imputed)	N
905	chr17	42040806	42040807	rs2341378	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PYY	5,365 Icelandic ancestry individuals	NA	17q21.31		rs2341378-C	0.3514	2E-14		0.151217	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
905	chr17	42057936	42057937	rs2631288	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q21.31	PYY	rs2631288-G	0.938870536590112	3E-7	(G_Parasutterella_HB)	0.55447	[0.34-0.77] unit increase	Illumina [7711310] (imputed)	N
905	chr17	42058872	42058873	rs4793062	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q21.31	NR	rs4793062-?	NR	3E-8				Illumina [7760689] (imputed)	N
905	chr17	42060630	42060631	rs62080325	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.31	PYY	rs62080325-A	0.66	4E-8		0.186	[0.13-0.24] unit decrease	Affymetrix [~ 9800000] (imputed)	N
905	chr17	42061276	42061277	rs147438979	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	HDL levels x fish oil supplementation interaction (2df)	67,544 European ancestry individuals	7,284 European ancestry individuals	17q21.31	PYY	rs147438979-C	0.0116	3E-16				Affymetrix [7954107] (imputed)	N
905	chr17	42064986	42064987	rs9895585	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	17q21.31	PYY	rs9895585-?	NR	9E-6				Affymetrix, Illumina [~ 1300000]	N
905	chr17	42071536	42071537	rs71371957	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.31	PYY	rs71371957-T	0.0375191668699665	5E-6		0.0065814	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
906	chr17	42074959	42074960	rs62080330	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	17q21.31	NR	rs62080330-C	0.790407	7E-6		1.1299435	[1.07-1.19]	Affymetrix [7791636] (imputed)	N
906	chr17	42082404	42082405	rs185863881	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17q21.31		rs185863881-?	NR	6E-14		0.11776	[0.087-0.148] unit increase	NR [9800000] (imputed)	N
906	chr17	42086501	42086502	rs189052	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q21.31	NAGS	rs189052-A	0.103935	2E-8		0.0212776	[0.014-0.029] unit increase	Affymetrix [NR] (imputed)	N
906	chr17	42106514	42106515	rs111618475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.31	NR	rs111618475-C	0.988177	6E-12		0.0247717	[0.017-0.032] unit increase	Affymetrix [16582909] (imputed)	N
906	chr17	42106514	42106515	rs111618475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.31	NR	rs111618475-C	0.988177	1E-10		0.0256225	[0.017-0.034] unit increase	Affymetrix [16582965] (imputed)	N
906	chr17	42111442	42111443	rs111767734	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q21.31	NR	rs111767734-T	0.988365	9E-10		0.0320591	[0.022-0.042] unit increase	Affymetrix [16582621] (imputed)	N
906	chr17	42111442	42111443	rs111767734	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q21.31	NR	rs111767734-T	0.988365	8E-9		0.0322328	[0.021-0.043] unit increase	Affymetrix [16582614] (imputed)	N
906	chr17	42136148	42136149	rs144219190	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs144219190-A	0.0388	4E-8	(European)	0.0977	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
906	chr17	42148204	42148205	rs228758	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q21.31	G6PC3	rs228758-C	0.878	4E-6	(AA)	0.049	[0.027-0.071] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
906	chr17	42148204	42148205	rs228758	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q21.31	G6PC3	rs228758-C		3E-8				Affymetrix, Illumina [17972582] (imputed)	N
906	chr17	42162884	42162884	rs573683582	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs573683582-?	NR	1E-12		0.0700126	[0.05-0.09] unit increase	Affymetrix [20259828] (imputed)	N
906	chr17	42164583	42164584	rs190144	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	HDAC5	rs190144-A	0.254553	2E-40		0.0287614	[0.025-0.033] unit increase	NR [13737936] (imputed)	N
906	chr17	42164583	42164584	rs190144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs190144-?	NR	2E-62				NR [~ 8900000] (imputed)	N
906	chr17	42164583	42164584	rs190144	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs190144-?	NR	3E-66		0.0396692	[0.035-0.044] unit increase	Affymetrix [20259828] (imputed)	N
906	chr17	42175820	42175821	rs170634	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs170634-?	NR	3E-65		0.0391505	[0.034-0.044] unit increase	Affymetrix [20259828] (imputed)	N
906	chr17	42175820	42175821	rs170634	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	HDAC5	rs170634-C	0.25801	3E-6	(men)	0.0274492	[0.016-0.039] unit increase	NR [17166351] (imputed)	N
906	chr17	42175820	42175821	rs170634	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	HDAC5	rs170634-C	0.257483	6E-17		0.0308417	[0.023-0.038] unit increase	NR [17166351] (imputed)	N
906	chr17	42175820	42175821	rs170634	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.31	HDAC5	rs170634-C	0.257024	6E-14	(women)	0.0383148	[0.028-0.049] unit increase	NR [17166351] (imputed)	N
906	chr17	42179280	42179281	rs2523162	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q21.31	NR	rs2523162-A	0.21	3E-12		0.0155	[0.011-0.02] unit increase	NR [NR]	N
906	chr17	42186949	42186950	rs77850808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.31		rs77850808-A	0.046449	1E-10		0.0308756	[0.021-0.04] unit decrease	Illumina [13479295] (imputed)	N
906	chr17	42191795	42191796	rs74456742	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.31	HDAC5	rs74456742-G	0.961944	2E-12		0.0361479	[0.026-0.046] unit decrease	Affymetrix [NR] (imputed)	N
906	chr17	42191795	42191796	rs74456742	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q21.31	HDAC5	rs74456742-G	0.961964	8E-9		0.030615	[0.02-0.041] unit decrease	Affymetrix [NR] (imputed)	N
906	chr17	42191892	42191893	rs228768	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	17q21.31	HDAC5	rs228768-G	0.294	3E-10		1.06652	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
906	chr17	42191892	42191893	rs228768	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	17q21.31	NR	rs228768-G	0.294	2E-9		1.0781	[1.05-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
906	chr17	42193184	42193185	rs228769	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	17q21.31	HDAC5	rs228769-G	0.20	4E-6		0.07	[0.04-0.10] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
906	chr17	42193184	42193185	rs228769	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	17q21.31	HDAC5	rs228769-G	0.20	2E-8		0.08	[0.05-0.11] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
906	chr17	42193781	42193784	rs139844979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	17q21.31		rs139844979-A	0.055649	4E-8		0.0440991	[0.028-0.06] unit increase	Illumina [13476299] (imputed)	N
906	chr17	42196463	42196464	rs79343067	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	17q21.31	NR	rs79343067-T	NR	4E-6	(GEE model)	1.2663	[0.73-1.81] unit increase	NR [NR] (imputed)	N
906	chr17	42197212	42197213	rs189049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.31	HDAC5, RP11-546M21.6	rs189049-C	0.702449	4E-9		0.014562402	[0.0097-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
906	chr17	42201040	42201041	rs112114764	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	17q21.31	HDAC5	rs112114764-T	NR	3E-8		0.937	[0.916-0.959]	Illumina [3742365] (imputed)	N
906	chr17	42201040	42201041	rs112114764	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q21.31	LSM12, G6PC3, HDAC5, C17orf53, ASB16, ASB16-AS1, TMUB2, ATXN7L3, UBTF, SLC4A1	rs112114764-G	0.31100000000000005	2E-8		1.0702628		NR [9372253] (imputed)	N
907	chr17	42225546	42225547	rs227584	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	C17orf53	rs227584-A	0.7	3E-24		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
907	chr17	42225546	42225547	rs227584	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	17q21.31	C17orf53	rs227584-T	0.73	9E-7		0.07	[0.04-0.10] s.d. decrease	Illumina [305051]	N
907	chr17	42241928	42241929	rs12602486	24244560	Chen P	2013-11-07	PLoS One	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	17q21.31	G6PC3	rs12602486-G	0.03	1E-24	(HbA1c, Malay)	0.362	[0.29-0.43] unit decrease	Illumina [up to 2400000] (imputed)	N
907	chr17	42256429	42256430	rs12937692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q21.31	ASB16	rs12937692-A	0.206164	4E-10		0.01714503	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42256429	42256430	rs12937692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs12937692-A	0.273191	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
907	chr17	42256429	42256430	rs12937692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q21.31	NR	rs12937692-A	0.208842	1E-11		0.015509	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
907	chr17	42268349	42268352	rs144005882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	TMUB2	rs144005882-T	0.0235	2E-14		0.05733334	[0.043-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42272908	42272909	rs2285951	32936915	Chai JF	2020-09-16	J Clin Endocrinol Metab	Genome-wide association for HbA1c in Malay identified deletion on SLC4A1 that influences HbA1c independent of glycemia.	Glycated hemoglobin levels	2,704 Malay ancestry individuals	NA	17q21.31		rs2285951-T	0.01	2E-35		0.671	[0.57-0.77] unit decrease	Illumina [47095002] (imputed)	N
907	chr17	42272908	42272909	rs2285951	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.31	ATXN7L3	rs2285951-?	NR	6E-11		0.04373699	[0.031-0.057] unit decrease	Illumina [27896057] (imputed)	N
907	chr17	42274798	42274799	rs80279459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	17q21.31	NR	rs80279459-G	0.95909	9E-10		0.06713	[0.046-0.089] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
907	chr17	42275833	42275834	rs117820542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.31		rs117820542-G	NR	3E-8		0.0411	[0.027-0.056] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
907	chr17	42278405	42278406	rs6503492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs6503492-?	NR	5E-17				NR [~ 8900000] (imputed)	N
907	chr17	42278840	42278841	rs9303601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q21.31	CTB-175E5.7	rs9303601-G	0.8624	4E-11		0.03444662	[0.024-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr17	42278840	42278841	rs9303601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q21.31	CTB-175E5.7	rs9303601-G	0.8623	3E-10		0.03281738	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr17	42278915	42278916	rs9911991	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q21.31	NR	rs9911991-C	0.2307	9E-11		0.019135455	[0.013-0.025] unit increase	Affymetrix [10549349] (imputed)	N
907	chr17	42281281	42281282	rs4473241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.31		rs4473241-T	NR	4E-10		0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
907	chr17	42281281	42281282	rs4473241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q21.31		rs4473241-T	NR	9E-11		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
907	chr17	42281281	42281282	rs4473241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.31		rs4473241-?	NR	6E-10				NR [~ 8900000] (imputed)	N
907	chr17	42283036	42283037	rs9910055	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q21.31	NR	rs9910055-T	0.231209	1E-12		0.0555772	[0.04-0.071] unit decrease	Affymetrix [17914406] (imputed)	N
907	chr17	42283036	42283037	rs9910055	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs9910055-T	0.2624	3E-11		0.0442	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
907	chr17	42283036	42283037	rs9910055	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q21.31	NR	rs9910055-T	0.2464	3E-9	(European)	0.0441	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
907	chr17	42285878	42285880	rs34575453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q21.31		rs34575453-C	NR	4E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
907	chr17	42285878	42285880	rs34575453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q21.31		rs34575453-C	NR	4E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
907	chr17	42287518	42287519	rs2071167	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.31	UBTF	rs2071167-T	0.249182	2E-9		0.01132	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
907	chr17	42287518	42287519	rs2071167	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.31	UBTF	rs2071167-T	0.249182	2E-8	(females)	0.01801	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
907	chr17	42287518	42287519	rs2071167	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.31	UBTF	rs2071167-T	0.249182	4E-11	(females)	0.02265	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
907	chr17	42287518	42287519	rs2071167	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.31	UBTF	rs2071167-T	0.249182	2E-10		0.01332	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
907	chr17	42290014	42290015	rs2855818	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17q21.31		rs2855818-A	0.24	9E-6		0.01	nmol/L decrease	NR [NR] (imputed)	N
907	chr17	42290014	42290015	rs2855818	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q21.31		rs2855818-A	0.24	3E-13				NR [NR] (imputed)	N
907	chr17	42290014	42290015	rs2855818	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q21.31		rs2855818-A	0.24	1E-21		0.016	% increase	NR [NR] (imputed)	N
907	chr17	42294336	42294337	rs2269906	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	UBTF	rs2269906-A	0.6531	6E-10		0.0631	[0.043-0.083] unit increase	NR [7784415] (imputed)	N
907	chr17	42294336	42294337	rs2269906	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	17q21.31	NR	rs2269906-?	NR	4E-7				NR [2500000] (imputed)	N
907	chr17	42294336	42294337	rs2269906	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	17q21.31	NR	rs2269906-?	NR	1E-8				NR [2500000] (imputed)	N
907	chr17	42294461	42294462	rs2269905	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q21.31		rs2269905-G	0.32	5E-19		8.91	z score increase	Affymetrix [9061022] (imputed)	N
907	chr17	42294461	42294462	rs2269905	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q21.31	NR	rs2269905-G	0.3379	1E-16				NR [9056863] (imputed)	N
907	chr17	42300277	42300278	rs10208	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs10208-T	0.3173	2E-9		0.0091	[0.0062-0.012] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
907	chr17	42301921	42301922	rs12451882	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q21.31		rs12451882-T	0.3	1E-16		8.27	z score increase	Affymetrix [9061022] (imputed)	N
907	chr17	42301921	42301922	rs12451882	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q21.31	NR	rs12451882-T	0.3128	1E-17				NR [9056863] (imputed)	N
907	chr17	42304643	42304644	rs7222349	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	17q21.31	UBTF, SLC4A1	rs7222349-?	NR	4E-8		1.0	NR unit decrease	NR [14100000] (imputed)	N
907	chr17	42304643	42304644	rs7222349	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	17q21.31	UBTF, SLC4A1	rs7222349-?	NR	5E-8				NR [14100000] (imputed)	N
907	chr17	42304643	42304644	rs7222349	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	17q21.31		rs7222349-A	NR	3E-9		0.04	[0.02-0.06] unit increase	Illumina [101200590]	N
907	chr17	42305698	42305699	rs9901595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	17q21.31	NR	rs9901595-G	0.303802	7E-19		0.038347	[0.03-0.047] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
907	chr17	42305698	42305699	rs9901595	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	17q21.31	UBTF, SLC4A1	rs9901595-?	NR	2E-18		0.04032	[0.031-0.049] unit increase novel	Illumina [6108953] (imputed)	N
907	chr17	42312777	42312778	rs8074740	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.31	UBTF	rs8074740-A	0.320481472981904	2E-10		0.0036384	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
907	chr17	42313643	42313644	rs11656316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs11656316-A	0.7001	4E-8	(conditional-joint)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
907	chr17	42321108	42321109	rs9893756	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.31	NR	rs9893756-?	NR	8E-6	(male)	0.12659	[0.071-0.182] unit decrease	Affymetrix [7794483] (imputed)	N
907	chr17	42321108	42321109	rs9893756	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.31	NR	rs9893756-?	NR	8E-6	(female)	0.16816	[0.094-0.242] unit decrease	Affymetrix [7794483] (imputed)	N
907	chr17	42321108	42321109	rs9893756	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.31	NR	rs9893756-?	NR	4E-10		0.14416	[0.099-0.189] unit decrease	Affymetrix [7794483] (imputed)	N
907	chr17	42323375	42323376	rs7209801	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q21.31	SLC4A1	rs7209801-A	0.4027	5E-9		0.0194	[0.013-0.026] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
907	chr17	42326257	42326258	rs5033	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q21.31	NR	rs5033-T	0.6999	6E-11		0.001606	[0.0011-0.0021] unit decrease	Affymetrix [NR] (imputed)	N
907	chr17	42327492	42327493	rs2072081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.31	SLC4A1	rs2072081-T	0.252642	4E-13		0.018590523	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42327492	42327493	rs2072081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.31	SLC4A1	rs2072081-T	0.252646	6E-13		0.01843353	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42328620	42328621	rs2285644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q21.31		rs2285644-A	NR	1E-16		0.0689	[0.053-0.085] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
907	chr17	42328620	42328621	rs2285644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q21.31		rs2285644-A	0.048816	5E-16		0.067714	[0.051-0.084] unit decrease	Illumina [13476266] (imputed)	N
907	chr17	42328620	42328621	rs2285644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	17q21.31		rs2285644-A	0.048963	2E-11		0.0484959	[0.034-0.063] unit decrease	Illumina [13478961] (imputed)	N
907	chr17	42328620	42328621	rs2285644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	17q21.31	NR	rs2285644-G	0.950712	9E-11		0.061366	[0.043-0.08] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
907	chr17	42329003	42329004	rs13306780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17q21.31		rs13306780-C	NR	6E-119		0.0504	[0.046-0.055] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
907	chr17	42329003	42329004	rs13306780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	17q21.31		rs13306780-C	0.306753	2E-17		0.0333777	[0.026-0.041] unit decrease	Illumina [13477028] (imputed)	N
907	chr17	42329003	42329004	rs13306780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q21.31		rs13306780-C	NR	2E-24		0.0222	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700128	3E-103		0.05353791	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700118	3E-101		0.053038694	[0.048-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700222	1E-49		0.036211457	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700154	1E-173		0.06968043	[0.065-0.075] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700229	1E-53		0.06587244	[0.058-0.074] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-A	0.700221	5E-188		0.0785061	[0.074-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700236	1E-52		0.03711876	[0.032-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700183	4E-14		0.018479034	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700222	5E-40		0.032753386	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700219	3E-40		0.03286507	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.31	SLC4A1	rs13306780-C	0.700182	1E-14		0.020066118	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q21.31	NR	rs13306780-A	0.302962	2E-50		0.031113	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.613581	4E-265				Affymetrix, Illumina [21126107] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.698806	3E-248		0.073923	[0.07-0.078] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.616511	5E-56				Affymetrix, Illumina [20825802] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.698935	9E-57		0.033605	[0.029-0.038] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.634571	5E-16				Affymetrix, Illumina [23472807] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.697272	1E-17		0.017915	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
907	chr17	42329003	42329004	rs13306780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs13306780-C	0.609533	2E-32				Affymetrix, Illumina [24653286] (imputed)	N
907	chr17	42329003	42329004	rs13306780	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q21.31	SLC4A1	rs13306780-C	NR	3E-17		0.0368681	[0.028-0.045] unit increase	Affymetrix [16832071] (imputed)	N
907	chr17	42330121	42330122	rs1476512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q21.31	SLC4A1	rs1476512-T	0.554176	4E-18		0.0197614	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42330121	42330122	rs1476512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q21.31	SLC4A1	rs1476512-T	0.5491	1E-16		0.03014745	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr17	42330170	42330171	rs2857078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q21.31		rs2857078-C	NR	4E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
907	chr17	42330170	42330171	rs2857078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs2857078-A	0.310906	1E-48				Affymetrix, Illumina [22063850] (imputed)	N
907	chr17	42330170	42330171	rs2857078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs2857078-?	NR	3E-43				NR [~ 8900000] (imputed)	N
907	chr17	42330170	42330171	rs2857078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.31		rs2857078-?	NR	1E-44				NR [~ 8900000] (imputed)	N
907	chr17	42330170	42330171	rs2857078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q21.31	SLC4A1	rs2857078-C	0.6968	2E-30		0.0453556	[0.038-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
907	chr17	42330170	42330171	rs2857078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q21.31	SLC4A1	rs2857078-C	0.6969	2E-22		0.03787122	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
907	chr17	42330728	42330729	rs5023	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q21.31	SLC4A1	rs5023-G	0.046	1E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
907	chr17	42331918	42331919	rs368353943	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	17q21.31		rs368353943-?	NR	9E-10		0.92622	[0.61-1.25] unit increase	NR [9800000] (imputed)	N
907	chr17	42331918	42331919	rs368353943	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	17q21.31		rs368353943-?	NR	5E-9		0.775991	[0.47-1.08] unit decrease	NR [9800000] (imputed)	N
907	chr17	42334011	42334012	rs45530735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	SLC4A1	rs45530735-T	0.680421	7E-9		0.02417103	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs13306775-A	0.145312	2E-19		0.029343115	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs13306775-A	0.145314	3E-16		0.026563121	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs13306775-A	0.145333	5E-13		0.02353103	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs13306775-A	0.14536	2E-17		0.0275779	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs13306775-A	0.145364	3E-15		0.025684599	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr17	42335684	42335685	rs13306775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.31	Intergenic	rs13306775-A	0.1396	8E-9	(MTAG)	0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
908	chr17	42336423	42336424	rs2521602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs2521602-A	0.0393738	4E-15				Affymetrix, Illumina [24558453] (imputed)	N
908	chr17	42336423	42336424	rs2521602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q21.31	NR	rs2521602-A	0.023327	6E-17		0.052705	[0.04-0.065] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
908	chr17	42336423	42336424	rs2521602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs2521602-A	0.0219	4E-8		0.0266	[0.017-0.036] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
908	chr17	42336423	42336424	rs2521602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs2521602-A	0.0219	4E-9	(MTAG)	0.0266	[0.018-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
908	chr17	42338247	42338248	rs2854528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs2854528-G	0.114247	2E-9		0.022413569	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42338944	42338945	rs5036	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	SLC4A1	rs5036-C		2E-17		0.066	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
908	chr17	42339671	42339672	rs75323010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q21.31	SLC4A1, AC003043.1	rs75323010-T	0.11023	2E-12		0.0530372	[0.046-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr17	42343700	42343701	rs45445495	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	SLC4A1	rs45445495-A	0.0495	1E-18		0.0397	[0.031-0.049] unit decrease	Affymetrix [18391927] (imputed)	N
908	chr17	42343700	42343701	rs45445495	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q21.31	NR	rs45445495-A	0.0493076	1E-8		0.133309	[0.088-0.179] unit decrease	Affymetrix [21375087] (imputed)	N
908	chr17	42345547	42345548	rs764370834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q21.31	AC003043.1	rs764370834-C	5.1699999999999E-4	4E-21		0.596763	[0.49-0.71] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42351760	42351761	rs62081185	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	17q21.31		rs62081185-?	NR	5E-8				Affymetrix [NR] (imputed)	N
908	chr17	42360768	42360769	rs544220997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.31	AC003043.1	rs544220997-G	3.9100000000003E-4	1E-11		0.49237898	[0.35-0.63] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42360768	42360769	rs544220997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.31	AC003043.1	rs544220997-G	3.9100000000003E-4	3E-11		0.4838467	[0.34-0.63] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42360768	42360769	rs544220997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	AC003043.1	rs544220997-G	3.88000000000055E-4	3E-26		0.77121323	[0.63-0.91] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr17	42360768	42360769	rs544220997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	AC003043.1	rs544220997-G	3.84999999999969E-4	1E-27		0.80346674	[0.66-0.95] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr17	42386661	42386662	rs76374005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs76374005-?	NR	3E-8				NR [~ 8900000] (imputed)	N
908	chr17	42397659	42397660	rs139114659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs139114659-?	NR	3E-13				NR [~ 8900000] (imputed)	N
908	chr17	42398996	42398997	rs76477327	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17q21.31	NR	rs76477327-?	NR	9E-7		0.1633	[0.098-0.228] unit increase	Illumina [at least 560000] (imputed)	N
908	chr17	42398996	42398997	rs76477327	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	17q21.31	SLC25A39	rs76477327-?	NR	9E-7		1.177	[1.104-1.256]	Illumina [13754664] (imputed)	N
908	chr17	42422104	42422105	rs556275251	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs556275251-?	NR	4E-6		4.605	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
908	chr17	42430243	42430244	rs5848	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRN	5,355 Icelandic ancestry individuals	NA	17q21.31		rs5848-T	0.2561	1E-19		0.186215	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
908	chr17	42430243	42430244	rs5848	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	17q21.31	GRN	rs5848-T	0.308162	8E-6		0.816	[0.747 - 0.893]	Illumina [5397657] (imputed)	N
908	chr17	42430243	42430244	rs5848	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	17q21.31	FAM171A2	rs5848-T	0.308162	8E-6		0.816	[0.747 - 0.893]	Illumina [5397657] (imputed)	N
908	chr17	42430243	42430244	rs5848	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.31	GRN	rs5848-C	0.7515625	5E-8	(GRN, 4992_49_1)	0.15787388	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
908	chr17	42430243	42430244	rs5848	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.31	GRN	rs5848-T	0.287	8E-23	(Granulins, GRN.4992.49.1)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
908	chr17	42430243	42430244	rs5848	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.31	GRN	rs5848-T	0.287	1E-18	(Complement C1q tumor necrosis factor-related protein 1, C1QTNF1.6304.8.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
908	chr17	42430243	42430244	rs5848	29186428	Tonjes A	2017-11-27	Hum Mol Genet	Genome-wide meta-analysis identifies novel determinants of circulating serum progranulin.	Progranulin levels	1,963 European ancestry individuals, 848 Sorbian (founder/genetic isolate) individuals	1800 European ancestry individuals	17q21.31	GRN	rs5848-T	0.252	5E-14		0.0665	unit decrease	Affymetrix [2069113] (imputed)	N
908	chr17	42434629	42434630	rs850738	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	FAM171A2	rs850738-A	0.6056	1E-11		0.071	[0.05-0.092] unit decrease	NR [7784415] (imputed)	N
908	chr17	42436999	42437000	rs71371993	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	17q21.31		rs71371993-?	NR	7E-9				NR [9705931] (imputed)	N
908	chr17	42437681	42437682	rs708384	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	17q21.31		rs708384-A	0.4074	2E-18				Illumina [3262988] (imputed)	N
908	chr17	42442343	42442344	rs708382	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	17q21.31		rs708382-?	NR	2E-9				Illumina [NR] (imputed)	N
908	chr17	42442343	42442344	rs708382	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	17q21.31	FAM171A2, ITGA2B	rs708382-T	NR	2E-8		2.439	[1.59-3.28] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
908	chr17	42443783	42443784	rs850737	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	17q21.31		rs850737-?	NR	5E-8				Affymetrix [NR] (imputed)	N
908	chr17	42443783	42443784	rs850737	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q21.31		rs850737-T	0.613	8E-27				Affymetrix [10369434] (imputed)	N
908	chr17	42446419	42446420	rs850736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q21.31		rs850736-C	NR	1E-54		0.0303	[0.027-0.034] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
908	chr17	42446419	42446420	rs850736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.31	RPL7L1P5	rs850736-C	0.373386	3E-40		0.030867765	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42446419	42446420	rs850736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs850736-C	0.387561	1E-91				Affymetrix, Illumina [24588908] (imputed)	N
908	chr17	42446419	42446420	rs850736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q21.31	NR	rs850736-C	0.375463	2E-89		0.038069	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
908	chr17	42446419	42446420	rs850736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs850736-G	0.623175	5E-130				Affymetrix, Illumina [17210439] (imputed)	N
908	chr17	42446419	42446420	rs850736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q21.31	NR	rs850736-G	0.625414	2E-131		0.048265	[0.044-0.052] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
908	chr17	42448179	42448180	rs850735	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	17q21.31	NR	rs850735-A	NR	2E-6	(EA)	0.002062	NR unit increase	Illumina [3262988] (imputed)	N
908	chr17	42449024	42449025	rs850734	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q21.31	ITGA2B	rs850734-G	0.3743	2E-16		0.03038476	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr17	42449788	42449789	rs5910	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q21.31		rs5910-G	0.626	1E-46				Affymetrix [10369434] (imputed)	N
908	chr17	42449788	42449789	rs5910	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	17q21.31	NR	rs5910-C	NR	4E-6		1.056	[1.03-1.08]	Illumina [11933700] (imputed)	N
908	chr17	42453537	42453538	rs142445733	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	17q21.31		rs142445733-?	NR	8E-21		0.310872	[0.24-0.38] unit increase	NR [9800000] (imputed)	N
908	chr17	42453537	42453538	rs142445733	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	17q21.31		rs142445733-?	NR	6E-52		0.497078	[0.43-0.56] unit decrease	NR [9800000] (imputed)	N
908	chr17	42453537	42453538	rs142445733	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	17q21.31		rs142445733-?	NR	2E-37		0.373582	[0.31-0.44] unit increase	NR [9800000] (imputed)	N
908	chr17	42455022	42455031	rs34603233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	ITGA2B	rs34603233-T	0.372701	8E-12		0.016362952	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr17	42455022	42455031	rs34603233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q21.31	ITGA2B	rs34603233-T	0.372738	7E-53		0.036184553	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
908	chr17	42455022	42455031	rs34603233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.31	ITGA2B	rs34603233-T	0.372744	6E-76		0.043903172	[0.039-0.049] unit increase	Affymetrix [93095623] (imputed)	N
908	chr17	42455022	42455031	rs34603233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q21.31	ITGA2B	rs34603233-T	0.3738	3E-20		0.03473588	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
908	chr17	42455022	42455031	rs34603233	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q21.31	ITGA2B	rs34603233-T	0.3735	2E-37		0.04765577	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr17	42463053	42463054	rs76066357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.31	ITGA2B	rs76066357-C	0.013003	3E-20		0.09258011	[0.073-0.112] unit increase	Affymetrix [93095623] (imputed)	N
909	chr17	42530846	42530850	rs562953244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q21.31		rs562953244-T	0.468748	1E-8		0.019713	[0.013-0.027] unit increase	Illumina [13478928] (imputed)	N
909	chr17	42541155	42541156	rs117964596	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	GPATCH8	rs117964596-T	0.9695	6E-13		0.4634	[0.34-0.59] mmHg decrease	Affymetrix [NR] (imputed)	N
909	chr17	42555786	42555787	rs11654428	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	17q21.31	NR	rs11654428-G	NR	6E-8	(EA)	0.002345	NR unit decrease	Illumina [3262988] (imputed)	N
909	chr17	42580003	42580004	rs35447133	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	GRN, FAM171A2, ITGA2B, GPATCH8, FZD2	rs35447133-?		1E-14				NR [7428630] (imputed)	N
909	chr17	42594754	42594755	rs150568286	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q21.31		rs150568286-G	0.987	5E-34				Affymetrix [10369434] (imputed)	N
909	chr17	42594754	42594755	rs150568286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31		rs150568286-A	0.012344	3E-19		0.09425528	[0.074-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr17	42594754	42594755	rs150568286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q21.31		rs150568286-A	0.012344	2E-37		0.13350563	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr17	42594754	42594755	rs150568286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q21.31	intergenic	rs150568286-A	0.0126	6E-12		0.1147846	[0.082-0.147] unit decrease	Affymetrix [~ 2500000] (imputed)	N
909	chr17	42594754	42594755	rs150568286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	17q21.31	intergenic	rs150568286-A	0.0126	4E-18		0.144293	[0.11-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
910	chr17	42639726	42639727	rs8072266	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q21.31	NR	rs8072266-T	NR	5E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr17	42660953	42660954	rs8082621	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs8082621-?		3E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
910	chr17	42680401	42680402	rs9904409	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q21.31	FZD2	rs9904409-A	0.0987	4E-18		0.2533	[0.2-0.31] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
910	chr17	42688459	42688460	rs11867858	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	intergenic	rs11867858-T	0.2076	2E-11		0.0152	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
910	chr17	42714283	42714284	rs76130710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs76130710-?	NR	1E-24				NR [~ 8900000] (imputed)	N
911	chr17	42752106	42752107	rs777869430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	C17orf104	rs777869430-C	6.97999999999976E-4	2E-16		0.37156856	[0.28-0.46] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr17	42752106	42752107	rs777869430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q21.31	C17orf104	rs777869430-C	6.96999999999948E-4	7E-27		0.4846004	[0.4-0.57] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr17	42752106	42752107	rs777869430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.31	C17orf104	rs777869430-C	6.96999999999948E-4	7E-15		0.34965086	[0.26-0.44] unit increase	Affymetrix [93095623] (imputed)	N
911	chr17	42773291	42773292	rs148589938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.31		rs148589938-G	0.020739	1E-11		0.05396456	[0.038-0.069] unit increase	Affymetrix [93095623] (imputed)	N
911	chr17	42788589	42788590	rs72826852	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q21.31	NR	rs72826852-A	0.118401	2E-8		0.0861236	[0.057-0.116] unit increase	Affymetrix [21375087] (imputed)	N
911	chr17	42790984	42790985	rs112651803	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs112651803-C	0.9212	3E-8	(MTAG)	0.0236	[0.015-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
911	chr17	42804074	42804075	rs181693066	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	DBF4B	rs181693066-A	0.0124	1E-10		0.0741	[0.052-0.097] unit decrease	Affymetrix [18391927] (imputed)	N
911	chr17	42817405	42817406	rs62066008	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q21.31	NR	rs62066008-G	0.14456	4E-9		0.0566515	[0.038-0.076] unit increase	Affymetrix [17914406] (imputed)	N
911	chr17	42839192	42839192	rs772490616	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.31	DBF4B, ADAM11	rs772490616-GT	0.848326	5E-9	(100 ms)	0.0422507	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
911	chr17	42851170	42851171	rs4793149	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	17q21.31	NA	rs4793149-G		2E-11		0.0126677	[0.009-0.0164] unit increase	Illumina [13288253] (imputed)	N
911	chr17	42857174	42857175	rs143360647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs143360647-?	NR	3E-8				NR [~ 8900000] (imputed)	N
912	chr17	42892078	42892079	rs146458111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs146458111-?	NR	2E-8				NR [~ 8900000] (imputed)	N
912	chr17	42919008	42919009	rs4793161	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q21.31	NR	rs4793161-A	NR	5E-8		5.452	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
912	chr17	42920928	42920929	rs11871429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q21.31		rs11871429-?	NR	1E-9				NR [~ 8900000] (imputed)	N
912	chr17	42920928	42920929	rs11871429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs11871429-A	0.7727	3E-14		0.0128	[0.0095-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
912	chr17	42920928	42920929	rs11871429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs11871429-A	0.7727	6E-14	(MTAG)	0.0117	[0.0086-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
912	chr17	42920928	42920929	rs11871429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs11871429-A	0.7738	8E-9	(MTAG)	0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
912	chr17	42927964	42927965	rs2304987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs2304987-A	0.2272	1E-13	(conditional-joint)	0.0125	[0.0092-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
912	chr17	42985868	42985869	rs28688440	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs28688440-?		5E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
912	chr17	42985868	42985869	rs28688440	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs28688440-?		4E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
912	chr17	42989087	42989088	rs2289681	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	17q21.31	GFAP	rs2289681-?	NR	5E-6		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
913	chr17	42994793	42994794	rs72828815	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q21.31		rs72828815-T	0.1849	6E-9		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
913	chr17	42995094	42995095	rs17546654	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	17q21.31	NR	rs17546654-A	NR	7E-6		0.5526	NR unit increase	Illumina [4533042] (imputed)	N
913	chr17	43002686	43002687	rs141842046	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	BEND3	rs141842046-?		4E-12				NR [7428630] (imputed)	N
913	chr17	43004834	43004835	rs35722758	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	17q21.31	NR	rs35722758-G	NR	6E-6	(random effect)	1.14	NR	NR [6904914] (imputed)	N
913	chr17	43034206	43034207	rs9915692	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.31	C1QL1	rs9915692-A	0.4634375	3E-32	(C1QL1, 6404_20_3)	0.2791951	[0.23-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
913	chr17	43034278	43034279	rs12150327	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	17q21.31	C1QL1	rs12150327-?		5E-9				Affymetrix, Illumina [2374420] (imputed)	N
913	chr17	43034278	43034279	rs12150327	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q21.31	NR	rs12150327-G	NR	2E-13		0.15	[0.11-0.19] unit increase	Affymetrix, Illumina [NR] (imputed)	N
913	chr17	43034278	43034279	rs12150327	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q21.31	NR	rs12150327-G	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
913	chr17	43037190	43037191	rs1055646	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QL1	5,348 Icelandic ancestry individuals	NA	17q21.31		rs1055646-C	0.4768	3E-53		0.263252	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
913	chr17	43038208	43038209	rs1007190	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	17q21.31	C1QL1	rs1007190-T	0.13	2E-6	(IGF2-DMR)			Illumina [515966]	N
913	chr17	43045971	43045972	rs115833422	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcus B abundance in stool	5,959 Finnish ancestry individuals	NA	17q21.31		rs115833422-T	0.0300941	1E-8		0.0963741	[0.063-0.129] unit increase	Illumina [7980478] (imputed)	N
913	chr17	43047082	43047083	rs3760381	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.31	C1QL1, DCAKD	rs3760381-A	0.2544	4E-10		1.0277789		Affymetrix [11880941] (imputed)	N
913	chr17	43055578	43055579	rs11652522	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs11652522-A	0.1045	2E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
913	chr17	43055578	43055579	rs11652522	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs11652522-A	0.1045	2E-11	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
913	chr17	43058741	43058742	rs6503409	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs6503409-T	0.3463	4E-9		0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
913	chr17	43059070	43059071	rs962888	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	17q21.31	C1QL1	rs962888-G	0.71	2E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
913	chr17	43059070	43059071	rs962888	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	17q21.31	C1QL1	rs962888-G	0.71	1E-6				Affymetrix, Illumina [14227402] (imputed)	N
913	chr17	43088227	43088228	rs12326005	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	DCAKD	rs12326005-G	0.511146	5E-14		0.0140202	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
913	chr17	43091722	43091723	rs4436817	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs4436817-?	NR	3E-20		0.0185535	[0.014-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
913	chr17	43103007	43103008	rs11868071	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QL1	5,348 Icelandic ancestry individuals	NA	17q21.31		rs11868071-A	0.1374	1E-20		0.235618	[0.19-0.29] unit decrease	Illumina [7506463] (imputed)	N
914	chr17	43126606	43126607	rs72830998	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q21.31	NMT1	rs72830998-A	0.0137677580208515	3E-6	(G_Gemmiger_HB)	1.33095	[0.77-1.89] unit decrease	Illumina [7711310] (imputed)	N
914	chr17	43128905	43128906	rs8071429	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	17q21.31	DCAKD, NMT1	rs8071429-A		3E-16		8.106	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
914	chr17	43128905	43128906	rs8071429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs8071429-?	NR	2E-26				NR [~ 8900000] (imputed)	N
914	chr17	43130624	43130624	rs149053776	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17q21.31		rs149053776-G	0.38	5E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
914	chr17	43130624	43130624	rs149053776	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q21.31		rs149053776-G	0.38	9E-12				NR [NR] (imputed)	N
914	chr17	43130624	43130624	rs149053776	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q21.31		rs149053776-G	0.38	5E-13		0.011	% increase	NR [NR] (imputed)	N
914	chr17	43130624	43130624	rs149053776	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs149053776-?		4E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
914	chr17	43130624	43130624	rs149053776	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs149053776-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
914	chr17	43130624	43130624	rs149053776	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs149053776-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
914	chr17	43136194	43136195	rs7222240	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	17q21.31	ACBD4, CCDC103, KIF18B, PLCD3, HEXIM1, DCAKD, GFAP, FMNL1, HEXIM2, NMT1, C1QL1, C17orf46, EFTUD2	rs7222240-G	0.02	9E-6		1.73	[1.36-2.20]	Illumina [792342]	N
914	chr17	43136302	43136303	rs55897749	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q21.31	DCAKD	rs55897749-C	0.6303	6E-18				Affymetrix, Illumina [9900000] (imputed)	N
914	chr17	43136302	43136303	rs55897749	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q21.31	DCAKD	rs55897749-C	NR	4E-18		0.0516	[0.04-0.063] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
914	chr17	43136302	43136303	rs55897749	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	17q21.31	DCAKD	rs55897749-C	0.6299	3E-17		0.0497	[0.038-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
914	chr17	43141341	43141342	rs6503413	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	NMT1	rs6503413-T	0.5323	1E-14		0.2513	[0.19-0.32] mmHg decrease	Affymetrix [NR] (imputed)	N
914	chr17	43144217	43144218	rs6503417	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	17q21.31	NMT1	rs6503417-C	NR	3E-19		0.0523	[0.041-0.064] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
914	chr17	43146475	43146476	rs12951622	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	NMT1	rs12951622-G	0.9316	1E-13		0.4001	[0.29-0.51] mmHg decrease	Affymetrix [NR] (imputed)	N
914	chr17	43151472	43151473	rs2157840	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2157840-?		1E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
914	chr17	43155913	43155914	rs7213273	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q21.31	NMT1	rs7213273-A	0.6668	9E-9		0.0341	[0.023-0.046] unit increase	Affymetrix, Illumina [NR] (imputed)	N
914	chr17	43155913	43155914	rs7213273	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	17q21.31	PLCD3	rs7213273-A	0.658	5E-10		0.413	[0.28-0.54] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
914	chr17	43155913	43155914	rs7213273	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	17q21.31	PLCD3	rs7213273-A	0.658	7E-6		0.185	[0.1-0.27] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
914	chr17	43155946	43155947	rs77981506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs77981506-?	NR	1E-7				NR [~ 8900000] (imputed)	N
914	chr17	43157708	43157709	rs7214267	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q21.31	NR	rs7214267-G	0.419	5E-13		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
914	chr17	43161352	43161353	rs2027995	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2027995-?		9E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
914	chr17	43163850	43163851	rs6503422	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q21.31	NMT1	rs6503422-T	NR	1E-11		0.0201562	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
914	chr17	43169108	43169109	rs2239918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q21.31	NMT1	rs2239918-A	NR	3E-18		0.025618	[0.02-0.031] unit decrease	Affymetrix [321788] (imputed)	N
914	chr17	43169108	43169109	rs2239918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	NMT1	rs2239918-A	NR	3E-11		0.0187782	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
914	chr17	43169714	43169715	rs34356918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	NMT1	rs34356918-A	0.073976	3E-10		0.027696237	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
914	chr17	43172848	43172849	rs11871043	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	17q21.31	NMT1	rs11871043-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
914	chr17	43172848	43172849	rs11871043	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	17q21.31	NMT1	rs11871043-T	0.4213	2E-9		0.0149	[0.01-0.0198] unit increase	NR [NR]	N
914	chr17	43173272	43173273	rs2301597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q21.31		rs2301597-C	NR	2E-29		0.0223	[0.018-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
914	chr17	43173272	43173273	rs2301597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q21.31		rs2301597-C	NR	2E-25		0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
914	chr17	43173272	43173273	rs2301597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q21.31		rs2301597-C	NR	4E-16		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
914	chr17	43173272	43173273	rs2301597	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	17q21.31	NMT1	rs2301597-T	NR	3E-9		0.00756723	[0.0051-0.0101] unit decrease	Affymetrix [10061374] (imputed)	N
914	chr17	43173272	43173273	rs2301597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs2301597-?	NR	2E-34				NR [~ 8900000] (imputed)	N
914	chr17	43173272	43173273	rs2301597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.31		rs2301597-?	NR	1E-8				NR [~ 8900000] (imputed)	N
914	chr17	43176803	43176804	rs2239923	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q21.31	NA	rs2239923-T	0.2891	2E-9	(Female)	1.051	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
914	chr17	43185491	43185492	rs1989803	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	17q21.31	NMT1	rs1989803-G	0.35666201	2E-21		0.482771	[0.38-0.58] unit increase	Affymetrix [9463307] (imputed)	N
914	chr17	43185491	43185492	rs1989803	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	17q21.31	NMT1	rs1989803-G	0.35666201	3E-6		0.00367505	[0.0021-0.0052] unit increase	Affymetrix [9463307] (imputed)	N
914	chr17	43188116	43188117	rs12948326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs12948326-T	0.6486	3E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
914	chr17	43188890	43188891	rs72832859	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q21.31	NR	rs72832859-G	0.190901	2E-16		0.0724165	[0.055-0.089] unit increase	Affymetrix [17914406] (imputed)	N
914	chr17	43192820	43192821	rs713101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	PLCD3	rs713101-A	NR	2E-8		0.0161218	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
914	chr17	43194412	43194413	rs112162280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	PLCD3	rs112162280-T	NR	7E-14		0.0233547	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
914	chr17	43194412	43194413	rs112162280	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.31	PLCD3	rs112162280-C	0.706581	2E-8		0.0123106	[0.008-0.0166] unit increase	Affymetrix [NR] (imputed)	N
914	chr17	43195204	43195205	rs739454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	PLCD3	rs739454-T	NR	2E-12		0.0434655	[0.031-0.056] unit increase	Affymetrix [321016] (imputed)	N
914	chr17	43195980	43195981	rs3744760	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	17q21.31	PLCD3	rs3744760-?	NR	1E-18		0.0609742	NR unit decrease	Affymetrix [464137]	N
914	chr17	43197592	43197593	rs2129732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q21.31	PLCD3	rs2129732-A	NR	4E-16		0.0292271	[0.022-0.036] unit increase	Affymetrix [321788] (imputed)	N
914	chr17	43201239	43201240	rs12604082	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	PLCD3	rs12604082-T	NR	1E-16		0.0330251	[0.025-0.041] unit increase	Affymetrix [321016] (imputed)	N
914	chr17	43202491	43202492	rs4986167	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q21.31	NR	rs4986167-G	0.753676	8E-9		0.0659764	[0.044-0.088] unit decrease	Affymetrix [21375087] (imputed)	N
914	chr17	43208120	43208121	rs12946454	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.31	PLCD3	rs12946454-A		1E-9		0.267	unit decrease	Affymetrix [at least 2696785] (imputed)	N
914	chr17	43208120	43208121	rs12946454	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.31	PLCD3	rs12946454-A		3E-10		0.186	unit decrease	Affymetrix [at least 2696785] (imputed)	N
914	chr17	43208120	43208121	rs12946454	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.31	PLCD3	rs12946454-A	0.7422	2E-6	(EA)	0.0199	unit decrease	Illumina [242296]	N
914	chr17	43208120	43208121	rs12946454	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Systolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	17q21.31	ACBD4, PLCD3, HEXIM1, HEXIM2	rs12946454-T	0.28	1E-8		0.57	[0.37-0.77] mm Hg increase	Affymetrix, Illumina [2497993] (imputed)	N
914	chr17	43212339	43212339	rs545502941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	ACBD4	rs545502941-CT	NR	4E-15		0.0272547	[0.02-0.034] unit increase	Affymetrix [321016] (imputed)	N
914	chr17	43212962	43212963	rs2291447	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	17q21.31	ACBD4	rs2291447-T	NR	2E-6	(Risk)	0.114	[0.067-0.161] unit increase	Illumina [628922]	N
914	chr17	43216280	43216281	rs4986172	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.31	ACBD4	rs4986172-?	NR	3E-11		0.019128796	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
914	chr17	43216280	43216281	rs4986172	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17q21.31	ACBD4	rs4986172-T	0.44	3E-6		0.025	[0.013-0.037] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
914	chr17	43216280	43216281	rs4986172	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q21.31	ACBD4	rs4986172-T	0.346	8E-27		0.034	[0.028-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
914	chr17	43216280	43216281	rs4986172	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.31	ACBD4	rs4986172-T	0.35	2E-16		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
914	chr17	43219921	43219922	rs531814036	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	17q21.31	ACBD4	rs531814036-C	NR	3E-7		1.06	[1.03-1.08]	Affymetrix [up to 73355677] (imputed)	N
914	chr17	43221807	43221808	rs71373536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.31		rs71373536-?	NR	1E-7				NR [~ 8900000] (imputed)	N
914	chr17	43223291	43223292	rs9894577	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	17q21.31	HEXIM1	rs9894577-A	0.3519	1E-10				Illumina [5508534] (imputed)	N
914	chr17	43223316	43223316	rs112981250	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	HEXIM1	rs112981250-CAT	0.3184	1E-52		0.0311	[0.027-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
914	chr17	43227213	43227214	rs1044977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs1044977-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
914	chr17	43232565	43232566	rs8067974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs8067974-?	NR	9E-73				NR [~ 8900000] (imputed)	N
914	chr17	43247956	43247957	rs4792819	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.31	NR	rs4792819-C	0.295971	1E-9		0.0210424	[0.014-0.028] unit increase	NR [19129689] (imputed)	N
914	chr17	43249443	43249444	rs4792867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs4792867-?	NR	1E-12				NR [~ 8900000] (imputed)	N
914	chr17	43250652	43250653	rs66827053	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.31	NR	rs66827053-?	NR	9E-10		0.15708	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
914	chr17	43250652	43250653	rs66827053	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.31	NR	rs66827053-?	NR	8E-6	(male)	0.18086	[0.1-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
915	chr17	43254151	43254152	rs11867300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	RP13-890H12.2	rs11867300-A	NR	1E-8		0.0251074	[0.016-0.034] unit increase	Affymetrix [321016] (imputed)	N
915	chr17	43255680	43255681	rs11651809	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	17q21.31	HEXIM2/LOC339192	rs11651809-G	0.29600000000000004	6E-16		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
915	chr17	43255680	43255681	rs11651809	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	17q21.31	HEXIM2/LOC339192	rs11651809-G	0.29600000000000004	3E-12		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
915	chr17	43256462	43256463	rs9901941	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.31	RP13-890H12.2	rs9901941-A	0.2757	1E-7		0.045	[0.028-0.062] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
915	chr17	43266486	43266487	rs62066682	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17q21.31	CTD-2020K17.1	rs62066682-A	0.3661	5E-7		0.0343	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
915	chr17	43273991	43273992	rs62066707	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.31	intergenic	rs62066707-A	0.321321	2E-6		0.009545	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
915	chr17	43275948	43275949	rs112297877	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs112297877-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
915	chr17	43275948	43275949	rs112297877	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs112297877-?		5E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
915	chr17	43275948	43275949	rs112297877	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs112297877-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
915	chr17	43277757	43277758	rs11870697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.31	CTD-2020K17.1	rs11870697-T	0.2745	2E-6		0.0376	[0.022-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
915	chr17	43283522	43283523	rs117225566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CTD-2020K17.1	rs117225566-C	NR	2E-8		0.0275474	[0.018-0.037] unit increase	Affymetrix [321016] (imputed)	N
915	chr17	43292034	43292035	rs55706568	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	17q21.31	FMNL1	rs55706568-C	0.55	3E-7		0.038	unit decrease (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
915	chr17	43298387	43298388	rs1552458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs1552458-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
915	chr17	43302258	43302259	rs12449792	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	17q21.31	FMNL1	rs12449792-T	0.46	2E-8		0.157	[0.1-0.21] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
915	chr17	43333124	43333125	rs11651968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q21.31		rs11651968-T	NR	2E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
915	chr17	43333124	43333125	rs11651968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.31	SPATA32	rs11651968-T	0.468954	2E-9		0.013249589	[0.0089-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
915	chr17	43334951	43334952	rs61299739	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs61299739-T	0.01394	8E-9	(LGMN)	0.00621	NR unit increase	Illumina [1671387] (imputed)	N
915	chr17	43336686	43336687	rs4247364	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q21.31	SPATA32	rs4247364-C	0.699936585198643	2E-10		0.045289926	[0.031-0.059] unit decrease	Affymetrix [35186738] (imputed)	N
915	chr17	43336686	43336687	rs4247364	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q21.31	SPATA32	rs4247364-G	0.30051	9E-14		1.0500362	1.03665496174751-1.0635901481432]	NR [9572556] (imputed)	N
915	chr17	43336686	43336687	rs4247364	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q21.31	MAP3K14-AS1, SPATA32, MAP3K14, FMNL1, HEXIM2, HEXIM1	rs4247364-G	0.30007	2E-10		1.0446265	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
915	chr17	43336686	43336687	rs4247364	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.31	ACBD4, C1QL1, CCDC103, DCAKD, EFTUD2, FMNL1, GFAP, HEXIM1, HEXIM2, KIF18B, MAP3K14, MAP3K14-AS1, MIR6783, MIR6784, NMT1, PLCD3, SPATA32	rs4247364-G	0.300065	8E-12		1.0478032	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
915	chr17	43336686	43336687	rs4247364	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.31	MAP3K14, SPATA32	rs4247364-G	0.3001	2E-11				Affymetrix [15688218] (imputed)	N
915	chr17	43336686	43336687	rs4247364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.31		rs4247364-?	NR	5E-9				NR [~ 8900000] (imputed)	N
915	chr17	43337135	43337136	rs7224548	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q21.31	SPATA32	rs7224548-G	0.3	8E-15				NR [> 9500000] (imputed)	N
915	chr17	43337135	43337136	rs7224548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.31	NR	rs7224548-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
915	chr17	43337969	43337970	rs11656414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.31	SPATA32	rs11656414-G	0.565812	4E-10		0.013898727	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
915	chr17	43337969	43337970	rs11656414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs11656414-G	0.564421	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
915	chr17	43340935	43340936	rs708563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	MAP3K14	rs708563-A	0.554519	2E-16		0.018993342	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
915	chr17	43353676	43353677	rs9972936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q21.31	NR	rs9972936-A	0.549121	1E-16		0.015393	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
915	chr17	43361490	43361491	rs2074292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q21.31		rs2074292-A	NR	5E-9		0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
915	chr17	43370480	43370481	rs721579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs721579-T	NR	1E-11		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
915	chr17	43370480	43370481	rs721579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs721579-T	NR	2E-9		0.0171	[0.011-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
915	chr17	43370480	43370481	rs721579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs721579-T	0.2617	6E-12		0.011	[0.0079-0.0141] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
915	chr17	43370480	43370481	rs721579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs721579-T	0.2617	2E-12	(MTAG)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
915	chr17	43377518	43377519	rs55913194	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q21.31	SPATA32	rs55913194-A	0.014008930073288	3E-7	(G_Gemmiger_HB)	1.4879	[0.92-2.05] unit decrease	Illumina [7711310] (imputed)	N
915	chr17	43378700	43378701	rs11657021	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.31	Intergenic	rs11657021-T	0.9123	2E-8	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
915	chr17	43383099	43383100	rs9908330	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs9908330-A	0.5688	1E-10	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
915	chr17	43383099	43383100	rs9908330	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q21.31	Intergenic	rs9908330-A	0.5688	4E-8		0.0159	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
916	chr17	43392207	43392208	rs7216796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs7216796-?	NR	3E-9				NR [~ 8900000] (imputed)	N
916	chr17	43392207	43392208	rs7216796	26498133	Arya R	2015-08-26	Genet Epidemiol	Genetic Variants Influencing Joint Damage in Mexican Americans and European Americans With Rheumatoid Arthritis.	Joint damage in rheumatoid arthritis	666 Mexican ancestry cases, 407 European ancestry cases	NA	17q21.31	MAP3K14	rs7216796-A	0.3619	6E-6	(Mexican)	0.2459	[0.14-0.35] unit decrease	Illumina [at least 127563] (imputed)	N
916	chr17	43395177	43395178	rs4792849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs4792849-G	0.704679	9E-23				Affymetrix, Illumina [23467995] (imputed)	N
916	chr17	43395177	43395178	rs4792849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q21.31	NR	rs4792849-G	0.741768	7E-24		0.021646	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
916	chr17	43399057	43399058	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	9E-23				NR [~ 8900000] (imputed)	N
916	chr17	43399057	43399058	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	7E-21				NR [~ 8900000] (imputed)	N
916	chr17	43399057	43399058	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	5E-14				NR [~ 8900000] (imputed)	N
916	chr17	43399057	43399058	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	1E-30				NR [~ 8900000] (imputed)	N
916	chr17	43399057	43399058	rs117642368	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	17q21.31	SPATA32	rs117642368-C	0.1073	3E-8		0.002	[0.001-0.003] unit decrease	Affymetrix [15275733] (imputed)	N
916	chr17	43403004	43403005	rs4792814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.31	RNA5SP443	rs4792814-C	0.618351	6E-10		0.014148688	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr17	43403004	43403005	rs4792814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.31		rs4792814-?	NR	1E-7				NR [~ 8900000] (imputed)	N
916	chr17	43403004	43403005	rs4792814	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and LDL levels (pleiotropy)	215,725 individuals	NA	17q21.31	MAP3K14	rs4792814-?	NR	5E-6			[0.8694-0.9496]	NR [2491989]	N
916	chr17	43403004	43403005	rs4792814	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q21.31	MAP3K14	rs4792814-G	NR	3E-6		1.08	[1.06-1.09]	Illumina [465434]	N
916	chr17	43407669	43407670	rs7222450	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.31	MAP3K14	rs7222450-A	NR	2E-10		1.0617	NR	Affymetrix, Illumina [8278136] (imputed)	N
916	chr17	43417272	43417273	rs17686238	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	MAP3K14	rs17686238-T	0.1071	8E-27		0.1896	[0.15-0.22] unit decrease	NR [7784415] (imputed)	N
916	chr17	43417272	43417273	rs17686238	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs17686238-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
916	chr17	43421719	43421720	rs72832896	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs72832896-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
916	chr17	43430695	43430696	rs7214661	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.31	MAP3K14, ARHGAP27	rs7214661-G	0.32	1E-8		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
916	chr17	43453064	43453065	rs35771499	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs35771499-C	0.02962	9E-9	(TOMM70)	0.0161	NR unit increase	Illumina [1671387] (imputed)	N
916	chr17	43456239	43456240	rs10468514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs10468514-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
916	chr17	43456239	43456240	rs10468514	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.31	NR	rs10468514-G	0.3984	1E-10		1.04	[1.028-1.052]	Affymetrix [15688218] (imputed)	N
916	chr17	43456239	43456240	rs10468514	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	17q21.31	NR	rs10468514-G	0.3984	6E-11		1.037	[1.026-1.047]	Affymetrix [15688218] (imputed)	N
916	chr17	43456239	43456240	rs10468514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.31		rs10468514-?	NR	4E-15				NR [~ 8900000] (imputed)	N
916	chr17	43456341	43456342	rs9303471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs9303471-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
916	chr17	43457885	43457886	rs9895436	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	17q21.31		rs9895436-A	0.4122	1E-9		1.07		Affymetrix, Illumina [9397031] (imputed)	N
916	chr17	43457885	43457886	rs9895436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CTB-39G8.2	rs9895436-A	NR	6E-9		0.0168186	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
916	chr17	43457885	43457886	rs9895436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	CTB-39G8.2	rs9895436-A	NR	1E-8		0.0165763	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
916	chr17	43457885	43457886	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	17q21.31	MAP3K14, ARHGAP27	rs9895436-A	0.398	7E-10		1.064	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
916	chr17	43457885	43457886	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.31	MAP3K14, ARHGAP27	rs9895436-?	NR	6E-20		1.07	[1.06-1.08]	Affymetrix [9000000] (imputed)	N
916	chr17	43457885	43457886	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.31	MAP3K14, ARHGAP27	rs9895436-A	NR	6E-7		1.035	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
916	chr17	43460373	43460374	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	1E-9		0.0241895	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
916	chr17	43460373	43460374	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	2E-9		0.0240172	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
916	chr17	43460373	43460374	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	2E-9		0.0239697	[0.016-0.032] unit increase	Affymetrix [321169] (imputed)	N
916	chr17	43460373	43460374	rs62064595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs62064595-?	NR	4E-45				NR [~ 8900000] (imputed)	N
916	chr17	43460373	43460374	rs62064595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.31		rs62064595-?	NR	6E-9				NR [~ 8900000] (imputed)	N
916	chr17	43460373	43460374	rs62064595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs62064595-A	NR	7E-13		7.185	z score decrease	Affymetrix [10847151] (imputed)	N
916	chr17	43460890	43460891	rs61572747	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs61572747-?		6E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
916	chr17	43460890	43460891	rs61572747	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs61572747-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
916	chr17	43460890	43460891	rs61572747	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ARHGAP27	rs61572747-A	NR	1E-10		0.011082	[0.0077-0.0145] unit increase	Affymetrix [18485882] (imputed)	N
916	chr17	43460890	43460891	rs61572747	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs61572747-A	NR	5E-14		7.528	z score decrease	Affymetrix [10847151] (imputed)	N
916	chr17	43460890	43460891	rs61572747	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs61572747-?	NR	4E-11		0.01768	[0.012-0.023] unit increase	Affymetrix [10847151] (imputed)	N
916	chr17	43460890	43460891	rs61572747	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	ARHGAP27	rs61572747-A	NR	1E-8		5.727	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
916	chr17	43471488	43471489	rs4763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs4763-?		9E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
916	chr17	43471488	43471489	rs4763	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs4763-A	0.1745	2E-8	(EA)	0.0464	[0.03-0.063] unit decrease	Illumina [~ 11800000] (imputed)	N
916	chr17	43474667	43474668	rs62064598	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000267344	rs62064598-C	NR	3E-15		0.013541	[0.01-0.017] unit increase	Affymetrix [18485882] (imputed)	N
916	chr17	43476605	43476606	rs1230097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs1230097-?	NR	1E-10				NR [~ 8900000] (imputed)	N
916	chr17	43487967	43487968	rs1230106	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1230106-A	NR	5E-11		6.57	z score decrease	Affymetrix [10847151] (imputed)	N
916	chr17	43488791	43488792	rs62064641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs62064641-?	NR	1E-13				NR [~ 8900000] (imputed)	N
916	chr17	43488791	43488792	rs62064641	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs62064641-C	NR	2E-11		0.02055	[0.015-0.027] unit increase	Affymetrix [10847151] (imputed)	N
916	chr17	43489161	43489161	rs111443054	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs111443054-?	NR	6E-26		0.0275831	[0.022-0.033] unit increase	Affymetrix [20259828] (imputed)	N
916	chr17	43493398	43493398	rs369762169	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs369762169-?		4E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
916	chr17	43495419	43495420	rs12936645	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q21.31	NR	rs12936645-T		5E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
916	chr17	43499327	43499328	rs35519908	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs35519908-?		3E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
916	chr17	43507296	43507297	rs12949256	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	ARHGAP27	rs12949256-T		3E-51		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
916	chr17	43511434	43511435	rs34465449	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs34465449-?	NR	1E-12				NR [NR]	N
916	chr17	43512317	43512318	rs56168933	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	ARHGAP27	rs56168933-?	NR	8E-28		2.0304	[1.67-2.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
916	chr17	43513440	43513441	rs11012	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	17q21.31	MAPT, PLEKHM1, IMP5	rs11012-T	NR	6E-8		1.43	[1.27-1.61]	Illumina [495715] (imputed)	N
917	chr17	43515926	43515927	rs35354512	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs35354512-?	NR	5E-12				NR [NR]	N
917	chr17	43515926	43515927	rs35354512	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs35354512-?	NR	1E-12				NR [NR]	N
917	chr17	43516401	43516402	rs17631303	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	intergenic	rs17631303-G	0.19	1E-8		1.27	[1.17-1.38]	Illumina [2568349] (imputed)	N
917	chr17	43516401	43516402	rs17631303	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	NR	rs17631303-?	NR	1E-8				Illumina [2568349] (imputed)	N
917	chr17	43520674	43520675	rs35329349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q21.31		rs35329349-C	NR	1E-10		0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
917	chr17	43525166	43525166	rs373607110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q21.31		rs373607110-CT	NR	4E-13		0.0219	[0.016-0.028] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
917	chr17	43525166	43525166	rs373607110	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.31	PLEKHM1	rs373607110-CT	0.185921	9E-21		0.027023539	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
917	chr17	43525166	43525166	rs373607110	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs373607110-?		5E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
917	chr17	43535951	43535952	rs4588023	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs4588023-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
917	chr17	43538096	43538097	rs147030255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17q21.31	AC091132.1, PLEKHM1	rs147030255-A	0.9918	7E-6		0.2514	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
917	chr17	43543075	43543075	rs200291097	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs200291097-?	0.174	5E-14	(total)	1003.1962	[742.31-1264.08] unit decrease	Affymetrix, Illumina [NR]	N
917	chr17	43549607	43549608	rs149366495	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	17q21.31	PLEKHM1	rs149366495-?		8E-13	(Global)			Affymetrix, Illumina [NR] (imputed)	N
917	chr17	43550585	43550586	rs151184436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs151184436-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
917	chr17	43555252	43555253	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	1E-10				NR [NR]	N
917	chr17	43555252	43555253	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	4E-8				NR [NR]	N
917	chr17	43555252	43555253	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	7E-14				NR [NR]	N
917	chr17	43555252	43555253	rs56192752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs56192752-A	0.8218	9E-31	(conditional-joint)	0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
917	chr17	43557054	43557054	rs375822897	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs375822897-?	NR	2E-24		0.0278212	[0.022-0.033] unit increase	Affymetrix [20259828] (imputed)	N
917	chr17	43563303	43563304	rs112275793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q21.31		rs112275793-C	NR	2E-19		0.0277	[0.022-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
917	chr17	43563605	43563606	rs142925250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17q21.31		rs142925250-A	0.799673	4E-8		0.028998	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
917	chr17	43565689	43565690	rs10432034	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs10432034-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
917	chr17	43567336	43567337	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	3E-12		1.1472089	[1.10406141518038-1.19204274035159]	Illumina [11595112] (imputed)	N
917	chr17	43567336	43567337	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA1 mutation carriers	2,933 European ancestry carrier cases, 16,103 European ancestry carrier controls	NA	17q21.31	NR	rs1879586-G	0.181254	7E-6		1.1804551	[1.0983093028467-1.26874471717965]	Illumina [11595112] (imputed)	N
917	chr17	43567336	43567337	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	2E-13		1.1339011	[1.09660984313914-1.1724605092959]	Illumina [11595112] (imputed)	N
917	chr17	43567336	43567337	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	3E-13		1.1585579	[1.11378456264581-1.20513099189349]	Illumina [11595112] (imputed)	N
917	chr17	43567336	43567337	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	2E-19		1.1611373	[1.12396655984348-1.19953742102822]	Illumina [11595112] (imputed)	N
917	chr17	43569244	43569245	rs113322852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs113322852-T	0.198807	2E-12		0.055314276	[0.04-0.071] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
917	chr17	43569244	43569245	rs113322852	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q21.31	NR	rs113322852-A	0.190284825959502	3E-19		0.021021854	[0.016-0.026] unit increase	NR [NR]	N
917	chr17	43573418	43573419	rs62065453	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.31	PLEKHM1	rs62065453-C	0.774564	2E-17		0.00232221	[0.0018-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
917	chr17	43573418	43573419	rs62065453	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs62065453-T	0.217174	3E-12		6.99	z score increase	NR [~ 10847151] (imputed)	N
917	chr17	43573418	43573419	rs62065453	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs62065453-T	0.217174	6E-15		7.81	z score increase	NR [10847151] (imputed)	N
917	chr17	43573418	43573419	rs62065453	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs62065453-T	0.21717	2E-24		10.227	z score increase	Illumina [18485882] (imputed)	N
917	chr17	43581751	43581752	rs1056009	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000131484, LRRC37A4P	rs1056009-T	NR	2E-11		0.011579	[0.0082-0.015] unit decrease	Affymetrix [18485882] (imputed)	N
918	chr17	43654467	43654468	rs62064364	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62064364-?		5E-10	(External capsule )			NR [8955960] (imputed)	N
918	chr17	43654467	43654468	rs62064364	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q21.31	LRRC37A4P, MAPK8IP1P2	rs62064364-?	NR	4E-35		0.978	[0.81-1.14] unit decrease	Affymetrix [11100000] (imputed)	N
918	chr17	43656175	43656176	rs1724438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs1724438-A	0.198341	4E-41				Affymetrix, Illumina [19872809] (imputed)	N
918	chr17	43656175	43656176	rs1724438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.31	NR	rs1724438-A	0.206005	6E-44		0.035496	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
918	chr17	43657256	43657257	rs79742625	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	17q21.31		rs79742625-T	0.19286199999999998	3E-18		1.060499	[1.04-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
918	chr17	43657439	43657440	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	4E-7		0.0048	[0.003-0.0066] unit increase	Affymetrix [~ 9500000] (imputed)	N
918	chr17	43657439	43657440	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	2E-6		0.7099	[0.42-1] unit increase	Affymetrix [~ 9500000] (imputed)	N
918	chr17	43657439	43657440	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	2E-11		0.0418	[0.03-0.054] unit increase	Affymetrix [~ 9500000] (imputed)	N
918	chr17	43659974	43659975	rs2668680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17q21.31	NR	rs2668680-C	0.177	4E-19		0.0174888	[0.014-0.021] unit decrease	NR [~ 9732723] (imputed)	N
918	chr17	43662019	43662020	rs1724429	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	17q21.31	NR	rs1724429-G	0.2	7E-16		0.024308164	[0.018-0.03] unit decrease	Affymetrix [10613246] (imputed)	N
918	chr17	43666491	43666492	rs112010353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q21.31	Intergenic	rs112010353-C	0.8237	2E-8		0.0143	[0.0092-0.0194] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
918	chr17	43666848	43666848	rs201647884	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs201647884-?	NR	3E-14		0.0439701	[0.033-0.055] unit increase	Affymetrix [20259828] (imputed)	N
918	chr17	43668512	43668512	rs527325496	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	17q21.31		rs527325496-C	0.81	4E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [8918919] (imputed)	N
918	chr17	43669490	43669491	rs112327620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q21.31		rs112327620-G	NR	3E-63		0.0388	[0.034-0.043] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
918	chr17	43669930	43669931	rs1724411	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	LRRC37A4P, MAPK8IP1P2	rs1724411-?	NR	3E-8				NR [~ 24000000] (imputed)	N
918	chr17	43670220	43670221	rs7502280	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	17q21.31	NR	rs7502280-?		2E-7		0.017	[0.011-0.023] unit decrease	Affymetrix [NR]	N
918	chr17	43670220	43670221	rs7502280	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	17q21.31	MAPK8IP1P2	rs7502280-T	0.867	9E-11		0.051	[0.035-0.067] SD units increase	NR [9926106] (imputed)	N
918	chr17	43671736	43671737	rs2463523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs2463523-A	0.76521	3E-17		0.0401451	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
918	chr17	43671736	43671737	rs2463523	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs2463523-A	NR	3E-10		1.0887	NR	Affymetrix [7846216] (imputed)	N
918	chr17	43681149	43681149	rs537920412	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs537920412-?		2E-13	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
918	chr17	43682404	43682405	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	LOC644172, CRHR1	rs150741403-C	0.85	2E-9		35.83	[24.13-47.53] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
918	chr17	43682404	43682405	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	CRHR1	rs150741403-C	0.84	2E-7	(EA)	40.46	[25.33-55.59] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
918	chr17	43682404	43682405	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31		rs150741403-?	NR	1E-9		31.95	[21.68-42.22] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
918	chr17	43686418	43686419	rs385199	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	17q21.31	CRHR1, PLEKHM1	rs385199-A		1E-72		0.0185	[0.017-0.02] unit increase	Affymetrix [13304133] (imputed)	N
918	chr17	43688316	43688317	rs28768976	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	17q21.31	SPPL2C	rs28768976-A	0.770677	2E-9		0.268112	[0.18-0.36] unit decrease	Affymetrix [8590397] (imputed)	N
918	chr17	43688316	43688317	rs28768976	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	17q21.31	SPPL2C	rs28768976-A	0.772	4E-12		0.255	[0.18-0.33] unit decrease	Affymetrix [8590397] (imputed)	N
918	chr17	43688316	43688317	rs28768976	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs28768976-A	0.77211	1E-25		10.453	z score decrease	Illumina [18485882] (imputed)	N
918	chr17	43695262	43695263	rs112997627	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	17q21.31		rs112997627-T	0.801	3E-8	(EA)	5.56	NR z score increase	Illumina [11532091] (imputed)	N
918	chr17	43696158	43696159	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2045	6E-9		0.02652443	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr17	43696158	43696159	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	2E-11		0.03056096	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr17	43696158	43696159	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2045	3E-11		0.03035789	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr17	43696158	43696159	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	3E-9		0.02733148	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr17	43696158	43696159	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	5E-9		0.02673918	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr17	43702339	43702340	rs189358029	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	17q21.31	NR	rs189358029-C	NR	4E-6		4.62	z score increase	NR [9015039] (imputed)	N
918	chr17	43705600	43705601	rs365825	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	17q21.31	CRHR1, LRRC37A3	rs365825-?	NR	4E-32		1.2722646	[1.22-1.33]	Illumina [12438219] (imputed)	N
918	chr17	43714849	43714850	rs2942168	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	17q21.31	MAPT	rs2942168-G	0.78	1E-28		1.27	[1.23-1.31]	Illumina [7689524] (imputed)	N
918	chr17	43716154	43716155	rs112550936	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q21.31	Intergenic	rs112550936-A	0.8436	2E-8		0.0174	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
918	chr17	43716154	43716155	rs112550936	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	17q21.31		rs112550936-G	0.18	3E-23		0.29	[0.23-0.35] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
918	chr17	43719142	43719143	rs393152	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 3,111 controls	67 cases, 457 controls	17q21.31	MAPT	rs393152-?	NR	1E-12		3.7	[NR]	Illumina [533898] (imputed)	N
918	chr17	43719142	43719143	rs393152	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	17q21.31	MAPT, C17orf69, KIAA1267, LOC644246	rs393152-A	0.82	2E-16		1.3	[NR]	Illumina [463185]	N
918	chr17	43728375	43728376	rs417968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q21.31		rs417968-?	NR	6E-16				NR [~ 8900000] (imputed)	N
918	chr17	43731718	43731719	rs241036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q21.31		rs241036-?	NR	7E-13				NR [~ 8900000] (imputed)	N
918	chr17	43731718	43731719	rs241036	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs241036-A	0.217056	8E-20		9.11	z score decrease	NR [10847151] (imputed)	N
918	chr17	43732780	43732788	rs11276875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs11276875-C	0.742206	1E-35		0.031498797	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
918	chr17	43739193	43739194	rs3843738	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs3843738-A	NR	6E-10		0.010773	[0.0074-0.0142] unit decrease	Affymetrix [18485882] (imputed)	N
918	chr17	43739193	43739194	rs3843738	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs3843738-?	NR	2E-20		0.0195325	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
918	chr17	43739193	43739194	rs3843738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs3843738-A	NR	2E-10		6.335	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
918	chr17	43740564	43740565	rs1724409	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17q21.31	MGC57346-CRHR1	rs1724409-T	0.7415	1E-10		0.0075	[0.0051-0.0099] unit increase	Affymetrix [~ 7740000] (imputed)	N
918	chr17	43744202	43744203	rs62053943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs62053943-T	NR	1E-10		0.0256218	[0.018-0.033] unit increase	Affymetrix [321169] (imputed)	N
918	chr17	43744202	43744203	rs62053943	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs62053943-T	0.1552	4E-68		0.27	[0.24-0.3] unit decrease	NR [7784415] (imputed)	N
918	chr17	43744202	43744203	rs62053943	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62053943-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
918	chr17	43744202	43744203	rs62053943	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	17q21.31	CRHR1	rs62053943-T	0.17489	8E-9		0.2957	[0.2-0.4] unit decrease	Illumina [9911207] (imputed)	N
918	chr17	43744202	43744203	rs62053943	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs62053943-C	NR	4E-14		0.012948	[0.0096-0.0163] unit increase	Affymetrix [18485882] (imputed)	N
918	chr17	43744343	43744344	rs1635298	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	17q21.31	CRHR1	rs1635298-A	NR	3E-8		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
918	chr17	43748711	43748712	rs143699161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q21.31	Intergenic	rs143699161-A	0.7717	3E-10	(MTAG)	0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
918	chr17	43748711	43748712	rs143699161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs143699161-A	NR	3E-8		5.542	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
918	chr17	43751912	43751913	rs1635291	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	17q21.31	CRHR1	rs1635291-A	0.754	7E-9		5.803	NR z score increase	Affymetrix [11141077] (imputed)	N
918	chr17	43754849	43754850	rs62055691	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	17q21.31	CRHR1	rs62055691-C	0.225	2E-23		0.0303	[0.024-0.036] unit decrease	Illumina [~ 250000] (imputed)	N
918	chr17	43757449	43757450	rs55974014	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	17q21.31	CRHR1	rs55974014-A	0.2142	3E-30		0.9498902	[NR]	Illumina [12493444] (imputed)	N
918	chr17	43758124	43758125	rs62055696	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	17q21.31		rs62055696-A	0.78	1E-11		0.309	[0.22-0.4] unit decrease	Affymetrix [8918919] (imputed)	N
918	chr17	43758124	43758125	rs62055696	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	50,331 European ancestry women	NA	17q21.31		rs62055696-A	0.78	1E-9		0.358	[0.24-0.47] unit decrease	Affymetrix [8918919] (imputed)	N
918	chr17	43758786	43758787	rs62055701	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs62055701-A	0.214491	6E-13		7.19	z score increase	NR [~ 10847151] (imputed)	N
918	chr17	43758897	43758898	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	17q21.31	NR	rs57222984-A	NR	5E-8		0.00872	[0.0056-0.0118] unit decrease	NR [11010159] (imputed)	N
918	chr17	43758897	43758898	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17q21.31	NR	rs57222984-A	NR	5E-12		0.00843452	[0.006-0.0108] unit decrease	NR [11010159] (imputed)	N
918	chr17	43758897	43758898	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17q21.31	NR	rs57222984-A	NR	8E-11	(adjusted for BMI)	0.00784	[0.0055-0.0102] unit decrease	NR [11010159] (imputed)	N
918	chr17	43758897	43758898	rs57222984	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs57222984-G	0.2423	3E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
918	chr17	43776740	43776741	rs76761706	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs76761706-T	0.215553	7E-32		11.76	z score decrease	NR [10847151] (imputed)	N
918	chr17	43776741	43776742	rs80143279	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	17q21.31	NR	rs80143279-C	NR	8E-22		0.02682	NR unit increase	NR [7259579]	N
918	chr17	43777312	43777313	rs1724422	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1724422-A	NR	6E-16		8.092	z score decrease	Affymetrix [10847151] (imputed)	N
918	chr17	43777312	43777313	rs1724422	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs1724422-?	NR	1E-11		0.01616	[0.012-0.021] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43778679	43778680	rs17688916	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	17q21.31	KIAA1267, LOC644246	rs17688916-T	NR	1E-11		1.074		Affymetrix [14661600] (imputed)	N
919	chr17	43778679	43778680	rs17688916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	SPATA32	rs17688916-A	0.196725	3E-11		6.653	unit increase	NR [10847151] (imputed)	N
919	chr17	43781082	43781083	rs117560908	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs117560908-C	0.23161	3E-10		0.0469897	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
919	chr17	43781082	43781083	rs117560908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs117560908-T	0.2663	2E-14	(MTAG)	0.0204	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
919	chr17	43781082	43781083	rs117560908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q21.31	Intergenic	rs117560908-T	0.2663	2E-10		0.0211	[0.015-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
919	chr17	43781746	43781747	rs1724425	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1724425-C	NR	4E-11		0.011456	[0.0081-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
919	chr17	43781746	43781747	rs1724425	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1724425-T	NR	7E-11		6.531	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr17	43783339	43783340	rs1526123	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1526123-T	NR	3E-9		0.010348	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
919	chr17	43783339	43783340	rs1526123	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1526123-T	NR	2E-10		6.403	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr17	43784227	43784228	rs9912362	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs9912362-T	0.3594	2E-13		0.077	[0.057-0.097] unit increase	NR [7784415] (imputed)	N
919	chr17	43785348	43785349	rs61667602	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	17q21.31	CRHR1	rs61667602-?	NR	1E-13		7.439	NR z score increase	Affymetrix [up to 6007810] (imputed)	N
919	chr17	43789709	43789710	rs113100008	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs113100008-C	NR	2E-10		6.371	z score decrease	Affymetrix [10847151] (imputed)	N
919	chr17	43790004	43790005	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q21.31		rs62056934-G	0.24	3E-203		30.42	z score increase	Affymetrix [9061022] (imputed)	N
919	chr17	43790004	43790005	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	17q21.31		rs62056934-G	0.24	9E-12				NR [13131314] (imputed)	N
919	chr17	43790004	43790005	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q21.31		rs62056934-G	0.24	3E-140		25.21	z score increase	Affymetrix [9061022] (imputed)	N
919	chr17	43795432	43795433	rs11655470	22504419	Taal HR	2012-04-15	Nat Genet	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	17q21.31	MAPT, CRHR1	rs11655470-T	0.49	4E-6		0.048	[0.028-0.068] SD increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
919	chr17	43798307	43798308	rs117615688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs117615688-A	NR	2E-12		0.0353	[0.026-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr17	43798307	43798308	rs117615688	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs117615688-A	0.067	7E-16		0.2324	[0.18-0.29] unit decrease	NR [7784415] (imputed)	N
919	chr17	43798348	43798348	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-13		0.0242957	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
919	chr17	43798348	43798348	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-13		0.0243254	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
919	chr17	43798348	43798348	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-10		0.0209349	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
919	chr17	43798348	43798348	rs3072094	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs3072094-TTTG	NR	3E-9		1.0787487	[1.05-1.1]	Affymetrix [7846216] (imputed)	N
919	chr17	43798359	43798360	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.31		rs55938136-A	0.774	3E-14				Affymetrix [10369434] (imputed)	N
919	chr17	43798359	43798360	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q21.31		rs55938136-A	0.774	5E-17				Affymetrix [10369434] (imputed)	N
919	chr17	43798359	43798360	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q21.31		rs55938136-A	0.774	4E-14				Affymetrix [10369434] (imputed)	N
919	chr17	43798359	43798360	rs55938136	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	CRHR1	rs55938136-G	0.22	5E-15				NR [9312144] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs55938136-?	NR	8E-13	(total brain volume)			NR [9227495] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		9E-9	(Average across all tracts)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		7E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		5E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-10	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		9E-10	(External capsule )			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		5E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		1E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
919	chr17	43798359	43798360	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		1E-8	(External capsule )			NR [8955960] (imputed)	N
919	chr17	43802505	43802506	rs7218457	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs7218457-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
919	chr17	43804185	43804186	rs35116560	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35116560-T	NR	9E-10		6.127	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr17	43805193	43805194	rs9303521	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9303521-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
919	chr17	43805193	43805194	rs9303521	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs9303521-T	NR	3E-8		0.0097067	[0.0063-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
919	chr17	43805193	43805194	rs9303521	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs9303521-T	NR	1E-10		6.437	z score increase	Affymetrix [10847151] (imputed)	N
919	chr17	43805193	43805194	rs9303521	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs9303521-?	NR	1E-9		0.01413	[0.0096-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43805193	43805194	rs9303521	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	17q21.31	CRHR1, MAPT	rs9303521-G	0.49	7E-7		1.3157895		Illumina [4903804] (imputed)	N
919	chr17	43805193	43805194	rs9303521	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	17q21.31	CRHR1	rs9303521-T	0.46	1E-8		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
919	chr17	43805193	43805194	rs9303521	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	17q21.31	CRHR1	rs9303521-T	0.46	4E-6		0.06	[0.04-0.07] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
919	chr17	43809095	43809096	rs7225384	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs7225384-C	NR	3E-14		7.604	z score decrease	Affymetrix [10847151] (imputed)	N
919	chr17	43809095	43809096	rs7225384	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs7225384-?	NR	5E-9		0.01379	[0.0092-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43810872	43810873	rs75022332	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	17q21.31	ACBD4	rs75022332-A	0.213608	2E-8		5.62	z score decrease	NR [10847151] (imputed)	N
919	chr17	43810895	43810896	rs77804065	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	17q21.31	CRHR1	rs77804065-T	NR	2E-12	(EA)	0.0711	NR unit decrease	Affymetrix [up to 6007810] (imputed)	N
919	chr17	43810895	43810896	rs77804065	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs77804065-T	NR	1E-31		11.693	z score increase	Affymetrix [10847151] (imputed)	N
919	chr17	43810895	43810896	rs77804065	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	ACBD4	rs77804065-T	0.217158	6E-10		6.18	z score increase	NR [10847151] (imputed)	N
919	chr17	43810895	43810896	rs77804065	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	17q21.31	LINC02210, CRHR1, MAPT	rs77804065-T	NR	6E-15		0.013	[0.0097-0.0163] unit increase	Affymetrix [9304965] (imputed)	N
919	chr17	43810895	43810896	rs77804065	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	ARHGAP27, CRHR1, KANSL1, MAPT, PLEKHM1, SPPL2C, STH	rs77804065-T	0.21716	8E-26		10.503	z score increase	Illumina [18485882] (imputed)	N
919	chr17	43811071	43811072	rs17563683	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	MGC57346-CRHR1, SPPL2C	rs17563683-G		4E-61		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
919	chr17	43811071	43811072	rs17563683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q21.31	CRHR1, RP11-105N13.4, RP11-293E1.1	rs17563683-G	0.2333	3E-26		0.04344178	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr17	43811071	43811072	rs17563683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q21.31	CRHR1, RP11-105N13.4, RP11-293E1.1	rs17563683-G	0.2333	2E-28		0.04515636	[0.037-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr17	43815144	43815145	rs7220839	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs7220839-C	NR	2E-8		0.01334	[0.0087-0.018] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43822771	43822772	rs9906974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs9906974-C	0.218668	1E-45		0.038292967	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr17	43824359	43824360	rs7207400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs7207400-?	NR	2E-30				NR [~ 8900000] (imputed)	N
919	chr17	43824359	43824360	rs7207400	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs7207400-C	NR	2E-15		0.02119	[0.016-0.026] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43824359	43824360	rs7207400	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q21.31	CRHR1	rs7207400-T	0.75	5E-6		1.1363636	[1.08-1.2]	NR [NR]	N
919	chr17	43826636	43826637	rs12150672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	17q21.31	NR	rs12150672-?	NR	4E-9				NR [2500000] (imputed)	N
919	chr17	43830704	43830705	rs11650571	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs11650571-T	NR	2E-9		0.010486	[0.0071-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
919	chr17	43830937	43830938	rs17426174	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q21.31	RP11-105N13.4	rs17426174-C	NR	6E-11		0.023148796	[0.016-0.03] unit decrease	Affymetrix [NR]	N
919	chr17	43836664	43836665	rs8068589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs8068589-?		7E-9	(External capsule )			NR [8955960] (imputed)	N
919	chr17	43836952	43836953	rs56214516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	17q21.31		rs56214516-C	NR	2E-8		0.0487	[0.032-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
919	chr17	43836952	43836953	rs56214516	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	17q21.31	CRHR1	rs56214516-C	0.192373	1E-8		0.049012262	[0.032-0.066] unit increase	Affymetrix [7288503] (imputed)	N
919	chr17	43836952	43836953	rs56214516	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs56214516-A	0.189219	1E-16		8.27	z score decrease	NR [10847151] (imputed)	N
919	chr17	43838719	43838720	rs62055888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q21.31		rs62055888-T	NR	2E-54		0.0364	[0.032-0.041] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
919	chr17	43839950	43839951	rs11079718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs11079718-T	0.223963	5E-45		0.037800062	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
919	chr17	43844559	43844560	rs55657917	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	17q21.31	LINC02210-CRHR1	rs55657917-T	0.779584	8E-12		0.036815435	[0.026-0.047] SD units decrease	NR [9926106] (imputed)	N
919	chr17	43844559	43844560	rs55657917	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	17q21.31	CRHR1	rs55657917-T	0.78	5E-12		0.3	milli-gravities decrease	Affymetrix [11800000] (imputed)	N
919	chr17	43844559	43844560	rs55657917	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	HOXB2	rs55657917-T	0.213403	7E-29		11.16	z score decrease	NR [10847151] (imputed)	N
919	chr17	43844559	43844560	rs55657917	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	HOXB2	rs55657917-T	0.213403	3E-20		9.23	z score decrease	NR [10847151] (imputed)	N
919	chr17	43845479	43845480	rs58089049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58089049-C	0.72549	3E-13				Affymetrix, Illumina [23472807] (imputed)	N
919	chr17	43845479	43845480	rs58089049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q21.31	NR	rs58089049-C	0.725554	3E-14		0.016225	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
919	chr17	43847569	43847577	rs66726284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs66726284-T	0.269497	4E-11		0.016498739	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr17	43847569	43847569	rs570010559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs570010559-T	NR	2E-11		0.0215923	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
919	chr17	43848749	43848750	rs62055935	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs62055935-T	0.214475	2E-15		7.97	z score decrease	NR [10847151] (imputed)	N
919	chr17	43849414	43849415	rs79730878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	CRHR1-IT1-CRHR1	rs79730878-T	0.771203	6E-20		0.0202142	[0.016-0.025] unit increase	NR [13737936] (imputed)	N
919	chr17	43850931	43850932	rs113518470	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	17q21.31	LRRC37A3, CRHR1	rs113518470-?	NR	6E-11		0.09	[0.116-0.063] unit decrease	Illumina [12039492] (imputed)	N
919	chr17	43851497	43851498	rs35909029	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs35909029-T	NR	2E-10		6.385	z score increase	Affymetrix [10847151] (imputed)	N
919	chr17	43851497	43851498	rs35909029	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs35909029-?	NR	2E-8		0.01299	[0.0085-0.0175] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43853921	43853922	rs56303031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs56303031-?	NR	6E-24				NR [~ 8900000] (imputed)	N
919	chr17	43854501	43854502	rs12938031	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs12938031-?	NR	3E-8	(total brain volume)			NR [9227495] (imputed)	N
919	chr17	43854501	43854502	rs12938031	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs12938031-A	NR	2E-12		0.012214	[0.0088-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
919	chr17	43854501	43854502	rs12938031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs12938031-G	NR	3E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43854501	43854502	rs12938031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs12938031-?	NR	1E-9		0.01436	[0.0097-0.019] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43854501	43854502	rs12938031	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs12938031-A	NR	6E-9		5.826	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr17	43854654	43854655	rs34186148	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34186148-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr17	43854654	43854655	rs34186148	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34186148-?		7E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
919	chr17	43854654	43854655	rs34186148	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs34186148-C	NR	4E-15		7.869	z score increase	Affymetrix [10847151] (imputed)	N
919	chr17	43854654	43854655	rs34186148	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs34186148-?	NR	7E-13		0.01715	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43855602	43855603	rs4076453	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs4076453-A	NR	3E-16		8.161	z score increase	Affymetrix [10847151] (imputed)	N
919	chr17	43856457	43856458	rs35076622	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17q21.31	RP11-105N13.4	rs35076622-?	NR	3E-12		0.01452853	[0.01-0.019] unit decrease	NR [7306098]	N
919	chr17	43856457	43856458	rs35076622	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35076622-G	NR	1E-9		0.010583	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
919	chr17	43856457	43856458	rs35076622	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35076622-A	NR	6E-9		5.812	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr17	43856638	43856639	rs62057061	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs62057061-G	NR	2E-22		0.02689	[0.021-0.032] unit increase	Affymetrix [10847151] (imputed)	N
919	chr17	43857222	43857223	rs11869294	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	17q21.31	NR	rs11869294-G		2E-6		0.2274	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
919	chr17	43857988	43857989	rs111433752	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	17q21.31	Intergenic	rs111433752-T	0.79	9E-12		0.12	[0.085-0.155] unit decrease	Affymetrix [7207648] (imputed)	N
919	chr17	43859404	43859405	rs12942300	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	17q21.31	Intergenic	rs12942300-T	0.829	2E-6		1.0893246	[NR]	Illumina [9112387] (imputed)	N
919	chr17	43859639	43859640	rs62057070	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs62057070-A	0.7896	5E-13	(Fusiform)	17.640184	[12.86-22.42] unit increase	Affymetrix, Illumina [NR]	N
919	chr17	43871146	43871147	rs12944712	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q21.31	NR	rs12944712-A	0.465863776253094	2E-9		0.011895811	[0.008-0.0158] unit increase	NR [NR]	N
919	chr17	43871981	43871982	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	17q21.31		rs56319902-T	0.24	2E-15				NR [13131314] (imputed)	N
919	chr17	43871981	43871982	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	17q21.31		rs56319902-T	0.24	3E-6				Affymetrix [9061022] (imputed)	N
919	chr17	43871981	43871982	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q21.31		rs56319902-T	0.24	1E-230		32.43	z score increase	Affymetrix [9061022] (imputed)	N
919	chr17	43871981	43871982	rs56319902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs56319902-T	0.2155	6E-33		0.0206	[0.017-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
919	chr17	43873726	43873727	rs4458044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs4458044-C	0.2581	6E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
919	chr17	43880046	43880047	rs110402	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs110402-G	NR	5E-8		0.0095317	[0.0061-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
919	chr17	43891632	43891633	rs242942	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q21.31	NR	rs242942-?	NR	3E-9				Illumina [7760689] (imputed)	N
919	chr17	43893715	43893716	rs8072451	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	17q21.31	MAPT, GRN, CRHR1, STH	rs8072451-?	NR	1E-8	(Intracranial volume, EA)	14489.99	[9539.28-19440.70] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr17	43896031	43896032	rs62057107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.31	Intergenic	rs62057107-T	0.2219	4E-28	(MTAG)	0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
919	chr17	43896031	43896032	rs62057107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs62057107-T	0.2192	5E-38	(MTAG)	0.0209	[0.018-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
919	chr17	43897721	43897722	rs79600142	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs79600142-T	0.79	1E-43	(total)	1414.6256	[1214.65-1614.6] unit increase	Affymetrix, Illumina [NR]	N
919	chr17	43901073	43901074	rs173365	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	CRHR1	rs173365-?	NR	4E-10	(EA)	0.881	[0.61-1.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr17	43902540	43902541	rs4327090	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs4327090-A	0.203777	9E-12		0.053262334	[0.038-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
919	chr17	43902540	43902541	rs4327090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q21.31	Intergenic	rs4327090-A	0.8074	1E-10		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
919	chr17	43903841	43903842	rs62057151	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs62057151-T	0.223812	1E-9		6.049	unit increase	NR [10847151] (imputed)	N
919	chr17	43906827	43906828	rs17689882	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	17q21.31	CRHR1	rs17689882-A	0.22	8E-9	(Intracranial volume, EA)	13460.47	[8891.61-18029.33] mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
919	chr17	43908151	43908152	rs16940672	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	CRHR1	rs16940672-T	0.218	2E-16		0.020259092	[0.015-0.025] unit decrease	Affymetrix [up to 18485882] (imputed)	N
920	chr17	43909411	43909412	rs242951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1	rs242951-C	NR	3E-8		0.0158025	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
920	chr17	43909411	43909412	rs242951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	CRHR1	rs242951-C	NR	5E-9		0.0168559	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
920	chr17	43910454	43910455	rs17689966	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	CRHR1	rs17689966-A	0.4354	2E-8		0.011534764	[0.0075-0.0155] unit increase	Affymetrix [up to 18485882] (imputed)	N
920	chr17	43910454	43910455	rs17689966	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	17q21.31	CRHR1	rs17689966-G	0.44	4E-6		0.77	[0.44-1.1] g/day increase	Affymetrix [10353649] (imputed)	N
920	chr17	43911442	43911443	rs1876829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q21.31	NR	rs1876829-C	0.22	7E-17		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
920	chr17	43911442	43911443	rs1876829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q21.31	NR	rs1876829-C	0.22	5E-8				Affymetrix [2446094] (imputed)	N
920	chr17	43911715	43911716	rs242949	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs242949-T	NR	2E-8		5.621	z score decrease	Affymetrix [10847151] (imputed)	N
920	chr17	43915496	43915497	rs62054807	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	CRHR1	rs62054807-?	NR	2E-11		1.4929	[1.06-1.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
920	chr17	43915496	43915497	rs62054807	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62054807-?		1E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
920	chr17	43915496	43915497	rs62054807	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62054807-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
920	chr17	43915496	43915497	rs62054807	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	CRHR1	rs62054807-C	NR	2E-16		0.014157	[0.011-0.018] unit increase	Affymetrix [18485882] (imputed)	N
920	chr17	43917135	43917136	rs242947	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT-AS1	rs242947-G	NR	5E-8		0.0095068	[0.0061-0.0129] unit decrease	Affymetrix [18485882] (imputed)	N
920	chr17	43917135	43917136	rs242947	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs242947-A	NR	9E-13		7.144	z score decrease	Affymetrix [10847151] (imputed)	N
920	chr17	43917135	43917136	rs242947	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs242947-?	NR	6E-9		0.01361	[0.009-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
920	chr17	43919067	43919068	rs2316766	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs2316766-T	0.2061	3E-7	(average)	0.003725959	[0.0023-0.0051] unit increase	Affymetrix, Illumina [NR]	N
920	chr17	43919095	43919096	rs2106786	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs2106786-?	NR	3E-8	(right pallidum)			NR [9227495] (imputed)	N
920	chr17	43919095	43919096	rs2106786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.31	SPPL2C	rs2106786-G	0.2242	3E-36		0.0537452	[0.045-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
920	chr17	43919104	43919105	rs2106785	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	ACBD4	rs2106785-T	0.213768	3E-13		7.29	z score increase	NR [~ 10847151] (imputed)	N
920	chr17	43923179	43923180	rs242944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT-AS1, SPPL2C	rs242944-G	NR	3E-8		0.0157419	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
920	chr17	43923653	43923654	rs12185233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q21.31	NR	rs12185233-C	0.2133	2E-14		0.0159	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
920	chr17	43923682	43923683	rs12185268	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 1,986 controls	NA	17q21.31	MAPT	rs12185268-?	NR	1E-9		3.46	[2.27-5.28]	Illumina [533898] (imputed)	N
920	chr17	43923682	43923683	rs12185268	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	17q21.31	MAPT	rs12185268-A	0.79	3E-14		1.3	[1.22-1.39]	Illumina [522782]	N
920	chr17	43924072	43924073	rs12373123	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q21.31		rs12373123-?	NR	7E-8		0.861		NR [98334]	N
920	chr17	43924072	43924073	rs12373123	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	SPPL2C	rs12373123-C		2E-61		0.044	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
920	chr17	43924199	43924200	rs12373142	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	17q21.31	SPPL2C	rs12373142-G	0.22	2E-10		1.08	[1.05 -1.1]	Illumina [at least 109036]	N
920	chr17	43924199	43924200	rs12373142	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q21.31	SPPL2C	rs12373142-G	0.22	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
920	chr17	43924218	43924219	rs12373124	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs12373124-C	NR	1E-27		0.08	NR unit decrease	NR [NR] (imputed)	N
920	chr17	43924218	43924219	rs12373124	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	17q21.31	intergenic	rs12373124-T	0.438	5E-10		1.33	[1.21-1.45]	Affymetrix, Illumina [2391230] (imputed)	N
920	chr17	43925296	43925297	rs17690703	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	17q21.31	SPPL2C, KANSL1, MAPT, CRHR1, STH	rs17690703-C	0.76	6E-9		1.43	[1.27-1.61]	Affymetrix [10601812] (imputed)	N
920	chr17	43926457	43926458	rs143942024	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs143942024-T	NR	5E-8		0.167697	NR unit decrease	NR [NR] (imputed)	N
920	chr17	43927289	43927290	rs17769552	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	17q21.31	SPPL2C	rs17769552-A	0.2235	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
920	chr17	43932324	43932325	rs140926888	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	17q21.31	NR	rs140926888-?	NR	8E-6		0.2646	[0.15-0.38] unit increase	Illumina [at least 560000] (imputed)	N
920	chr17	43932796	43932797	rs10445366	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs10445366-C	0.1843	7E-11		0.0886	[0.062-0.115] unit decrease	NR [9744772] (imputed)	N
920	chr17	43932797	43932798	rs10445367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q21.31		rs10445367-T	NR	1E-18		0.0282	[0.022-0.034] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
920	chr17	43932797	43932798	rs10445367	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs10445367-?		1E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
920	chr17	43933170	43933171	rs10445368	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	VCAN	rs10445368-?		2E-38				NR [7428630] (imputed)	N
920	chr17	43933306	43933307	rs7221167	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		MAPT	rs7221167-C	0.396	3E-8		0.847932	[0.799836-0.898921}	Illumina [1465938] (imputed)	N
920	chr17	43933306	43933307	rs7221167	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls		MAPT-AS1	rs7221167-T	0.581	1E-37		0.1443	[0.12-0.17] unit increase	NR [7784415] (imputed)	N
920	chr17	43933306	43933307	rs7221167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA		NR	rs7221167-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
920	chr17	43933306	43933307	rs7221167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA		NR	rs7221167-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
920	chr17	43933306	43933307	rs7221167	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA		MAPT-AS1	rs7221167-T	NR	3E-8		0.0096293	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
920	chr17	43933306	43933307	rs7221167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA			rs7221167-?	NR	3E-25				NR [~ 8900000] (imputed)	N
920	chr17	43933789	43933790	rs142955985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q21.31		rs142955985-T	NR	2E-24		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
920	chr17	43936663	43936664	rs242934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs242934-C	NR	2E-9		5.983	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr17	43939213	43939214	rs140843301	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs140843301-C	NR	6E-9		0.164049	NR unit decrease	NR [NR] (imputed)	N
920	chr17	43939398	43939399	rs56026232	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			MAPT-AS1	rs56026232-C	0.2109	2E-10		36.0549	[25-47.11] unit decrease	Affymetrix [8165723] (imputed)	N
920	chr17	43940020	43940021	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	6E-15		0.0239	[0.018-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
920	chr17	43940020	43940021	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	3E-46		0.0415	[0.036-0.047] unit decrease	Affymetrix [19819130] (imputed)	N
920	chr17	43940020	43940021	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	3E-49		0.0426	[0.037-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
920	chr17	43945287	43945288	rs1158660	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs1158660-A	NR	8E-10		6.147	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr17	43950321	43950322	rs9898399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT-AS1	rs9898399-G	NR	3E-13		0.0215566	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
920	chr17	43950440	43950441	rs62055489	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q21.31	NR	rs62055489-A	0.2195	1E-17				NR [9056863] (imputed)	N
920	chr17	43950444	43950445	rs113722063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q21.31		rs113722063-C	NR	6E-30		0.0345	[0.029-0.04] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
920	chr17	43950975	43950976	rs10491140	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs10491140-?	NR	3E-26		0.0257143	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
920	chr17	43953718	43953719	rs2214258	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2214258-C	0.21533	2E-25		10.415	z score increase	Illumina [18485882] (imputed)	N
920	chr17	43959596	43959597	rs544055237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.31		rs544055237-C	NR	5E-20		0.0267	[0.021-0.032] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
920	chr17	43964538	43964539	rs62055544	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs62055544-A	0.216596	5E-16		8.1	z score decrease	NR [10847151] (imputed)	N
920	chr17	43964566	43964567	rs62055546	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	17q21.31	MAPT	rs62055546-A	0.7779	8E-25		0.027622232	[0.022-0.033] unit increase	Affymetrix [11514936] (imputed)	N
920	chr17	43965129	43965130	rs112436750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.31	MAPT-AS1	rs112436750-A	0.232488	2E-25		0.027528536	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr17	43970316	43970317	rs8065165	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs8065165-T	NR	4E-10		6.265	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr17	43973232	43973233	rs76324150	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q21.31	ARHGAP27, MAPT, STH, NSF, WNT3	rs76324150-?		8E-16				Affymetrix, Illumina [NR] (imputed)	N
920	chr17	43975414	43975415	rs62056789	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	MAPT	rs62056789-C	0.3822	3E-12		0.017144047	[0.012-0.022] unit decrease	Affymetrix [up to 18485882] (imputed)	N
920	chr17	43975414	43975415	rs62056789	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	MAPT	rs62056789-C	NR	3E-11		0.013291	[0.0094-0.0172] unit decrease	Affymetrix [18485882] (imputed)	N
920	chr17	43976683	43976684	rs9303523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs9303523-C	NR	5E-13		0.0214657	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
920	chr17	43976683	43976684	rs9303523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9303523-C	NR	1E-10		0.0193735	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
920	chr17	43976812	43976813	rs11079727	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs11079727-?	NR	2E-9		0.010276	[0.0069-0.0136] unit decrease	Affymetrix [805426] (imputed)	N
920	chr17	43977826	43977827	rs1864325	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	MAPT	rs1864325-T	0.22	5E-11		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
920	chr17	43977845	43977846	rs28646281	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs28646281-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
920	chr17	43977845	43977846	rs28646281	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs28646281-T	NR	1E-10		6.445	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr17	43978987	43978988	rs1560312	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1560312-A	NR	5E-21		9.409	z score decrease	Affymetrix [10847151] (imputed)	N
920	chr17	43978987	43978988	rs1560312	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs1560312-?	NR	1E-16		0.02016	[0.015-0.025] unit increase	Affymetrix [10847151] (imputed)	N
920	chr17	43979971	43979972	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	3E-12		0.0214776	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
920	chr17	43979971	43979972	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	2E-12		0.0217009	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
920	chr17	43979971	43979972	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	1E-10		0.0199595	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
920	chr17	43979971	43979972	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	1E-12		0.0220895	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
920	chr17	43985635	43985636	rs3785879	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs3785879-A	NR	1E-10		0.01549	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
920	chr17	43985635	43985636	rs3785879	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs3785879-A	NR	6E-10		6.196	z score decrease	Affymetrix [10847151] (imputed)	N
920	chr17	43991271	43991272	rs17563986	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	17q21.31	MAPT	rs17563986-?	NR	5E-12		6.905	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
920	chr17	43991271	43991272	rs17563986	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	17q21.31	MAPT	rs17563986-?	NR	8E-8		5.368	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
920	chr17	43991642	43991643	rs9913462	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	17q21.31	MAPT	rs9913462-C	0.893	3E-6		1.2048466	1.11978141-1.29637389	Affymetrix, Illumina [7701827] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		7E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		6E-10	(External capsule )			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		5E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		4E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		3E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
920	chr17	43992942	43992943	rs9899833	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs9899833-G	NR	5E-15		0.013529	[0.01-0.017] unit increase	Affymetrix [18485882] (imputed)	N
920	chr17	43993375	43993376	rs3785880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs3785880-?	NR	3E-8				NR [~ 8900000] (imputed)	N
920	chr17	43994020	43994021	rs35908989	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	MAPT	rs35908989-C	0.23	1E-8				NR [9312144] (imputed)	N
920	chr17	43994647	43994648	rs17649553	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	17q21.31	ARHGAP27, CRHR1, KANSL1, SPPL2C, MAPT, STH	rs17649553-C	0.779	1E-68		1.2820514	[1.25-1.32]	Illumina [11933700] (imputed)	N
920	chr17	43994647	43994648	rs17649553	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	17q21.31	MAPT	rs17649553-C	0.774	2E-48		1.3	[1.27-1.34]	Illumina [7893274] (imputed)	N
920	chr17	43996139	43996140	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	3E-11		0.0191884	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
920	chr17	43996139	43996140	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	1E-11		0.0195227	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
920	chr17	43996139	43996140	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	1E-8		0.0165211	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
920	chr17	43996139	43996140	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	5E-11		0.0191014	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
920	chr17	43997524	43997525	rs138181598	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	17q21.31	MAPT	rs138181598-?	NR	9E-6		0.463	[0.27-0.66] unit decrease	Illumina [6319684] (imputed)	N
920	chr17	44002270	44002271	rs9904290	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q21.31		rs9904290-A	0.427	1E-9				Affymetrix [10369434] (imputed)	N
920	chr17	44002270	44002271	rs9904290	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs9904290-?	NR	2E-9		0.01443	[0.0097-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
920	chr17	44006600	44006601	rs17564829	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	17q21.31	CRHR1, MAPT	rs17564829-G	0.24	2E-9		1.25	[1.16-1.35]	Illumina [237619] (imputed)	N
920	chr17	44013474	44013475	rs79857651	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs79857651-A	0.215594	9E-20		9.1	z score increase	NR [10847151] (imputed)	N
920	chr17	44013964	44013964	rs55939347	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	17q21.31	LINC02210-CRHR1, MAPT-AS1, MAPT, KANSL1	rs55939347-TC	0.217426	2E-8		0.29389	[0.19-0.4] unit increase	Affymetrix [NR] (imputed)	N
920	chr17	44015445	44015446	rs12150229	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17q21.31	NR	rs12150229-G	0.2236	4E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
920	chr17	44016470	44016471	rs572329978	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	MAPT	rs572329978-T	0.9747	1E-12		0.058	[0.042-0.074] unit increase	Affymetrix [18391927] (imputed)	N
920	chr17	44017724	44017725	rs11653258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.31	NR	rs11653258-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
920	chr17	44018398	44018399	rs62061733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs62061733-?	NR	3E-29				NR [~ 8900000] (imputed)	N
920	chr17	44018398	44018399	rs62061733	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs62061733-A	0.22111	2E-28		11.07	z score decrease	NR [10847151] (imputed)	N
920	chr17	44018487	44018488	rs62061734	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	17q21.31		rs62061734-C	0.2205	2E-9		0.01775	[0.012-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
920	chr17	44018487	44018488	rs62061734	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs62061734-C	0.2103	8E-12	(EA)	0.0526	[0.038-0.068] unit decrease	Illumina [~ 11800000] (imputed)	N
920	chr17	44019082	44019083	rs141455452	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	17q21.31	Intergenic	rs141455452-T	0.525	6E-7		1.078	[NR]	Illumina [9112387] (imputed)	N
920	chr17	44019102	44019103	rs112568425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q21.31	MAPT	rs112568425-G	0.279718	1E-14		0.02036243	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
920	chr17	44019711	44019712	rs242557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs242557-A	NR	9E-9		0.0166684	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
920	chr17	44019711	44019712	rs242557	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	17q21.31		rs242557-A	0.456967371	1E-8		0.9372902	[0.916595886-0.958451717]	Illumina [8919992] (imputed)	N
920	chr17	44019711	44019712	rs242557	31059154	Chen Z	2019-05-06	Mov Disord	Genome-wide survey of copy number variants finds MAPT duplications in progressive supranuclear palsy.	Progressive supranuclear palsy	283 European ancestry cases, 4,472 European ancestry controls	1,178 cases, 3,759 controls	17q21.31	MAPT	rs242557-G	0.48	2E-22		1.9061		Illumina [at least 284674]	N
920	chr17	44019711	44019712	rs242557	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q21.31	MAPT	rs242557-G	0.61	4E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
920	chr17	44019711	44019712	rs242557	28100725	Chen J	2017-01-18	Neurology	Genome-wide association study identifies MAPT locus influencing human plasma tau levels.	Plasma t-tau levels	463 European ancestry Alzheimer's disease cases, 163 European ancestry individuals with mild cognitive impairment, 151 European ancestry individuals	360 individuals, 27 individuals later diagnosed with mild cognitive impairment	17q21.31	MAPT	rs242557-A	0.3715	1E-12		0.38	NR pg/ml increase	Illumina [316802]	N
920	chr17	44019711	44019712	rs242557	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	MAPT	rs242557-?	0.35	9E-18	(controlling for rs8070723)	1.43	[1.32-1.54]	Illumina [531451]	N
920	chr17	44025887	44025888	rs242559	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	17q21.31	MAPT	rs242559-A	NR	4E-7		0.0422	unit decrease	Illumina [15409056] (imputed)	N
920	chr17	44025887	44025888	rs242559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.31	MAPT	rs242559-A	0.767711	4E-43		0.036413994	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
920	chr17	44025887	44025888	rs242559	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs242559-A	NR	1E-13		7.429	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
920	chr17	44026738	44026739	rs242562	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs242562-?	NR	2E-9		0.01038	[0.007-0.0138] unit decrease	Affymetrix [805426] (imputed)	N
920	chr17	44026738	44026739	rs242562	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q21.31	MAPT	rs242562-?	NR	2E-14	(EA)	191.41	[142.57-240.25] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
920	chr17	44027365	44027366	rs62062797	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62062797-?		5E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
920	chr17	44034574	44034575	rs55746658	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	17q21.31		rs55746658-?	NR	2E-6		4.72	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
920	chr17	44034574	44034575	rs55746658	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	17q21.31		rs55746658-?	NR	2E-6		4.72	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
920	chr17	44037490	44037491	rs17650842	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs17650842-A	0.21663	2E-12		7.01	z score decrease	NR [~ 10847151] (imputed)	N
920	chr17	44038784	44038785	rs62063281	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	MAPT	rs62063281-?	NR	3E-8				NR [~ 24000000] (imputed)	N
920	chr17	44038784	44038785	rs62063281	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	17q21.31	NR	rs62063281-G	0.22	5E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 17000000] (imputed)	N
920	chr17	44038784	44038785	rs62063281	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	17q21.31	STH	rs62063281-A	0.7784	4E-15		0.022359965	[0.017-0.028] unit increase	Affymetrix [11515109] (imputed)	N
921	chr17	44041106	44041107	rs56280951	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	ACBD4	rs56280951-A	0.21432	8E-13		7.17	z score increase	NR [10847151] (imputed)	N
921	chr17	44041986	44041987	rs62063286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs62063286-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
921	chr17	44041986	44041987	rs62063286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.31	NR	rs62063286-?	NR	7E-19				Affymetrix [~ 8270000] (imputed)	N
921	chr17	44050827	44050828	rs9896485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9896485-C	NR	3E-8		0.0159808	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
921	chr17	44050827	44050828	rs9896485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9896485-C	NR	1E-10		0.0189294	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
921	chr17	44051403	44051404	rs10514889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	MAPT	rs10514889-A	NR	9E-11		0.0207168	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
921	chr17	44051403	44051404	rs10514889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	MAPT	rs10514889-A	NR	6E-11		0.0209487	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
921	chr17	44051587	44051588	rs117124984	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	17q21.31	NR	rs117124984-C	0.7853	3E-13		1.0996262	[1.07-1.13]	Affymetrix, Illumina [10858887] (imputed)	N
921	chr17	44051588	44051589	rs118087478	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs118087478-?	NR	8E-14	(total brain volume)			NR [9227495] (imputed)	N
921	chr17	44054695	44054696	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0161546	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
921	chr17	44054695	44054696	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0162412	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
921	chr17	44054695	44054696	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0162416	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
921	chr17	44054695	44054696	rs754593	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs754593-G	NR	1E-9		0.010588	[0.0072-0.014] unit decrease	Affymetrix [18485882] (imputed)	N
921	chr17	44054695	44054696	rs754593	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs754593-A	NR	3E-12		6.976	z score decrease	Affymetrix [10847151] (imputed)	N
921	chr17	44054695	44054696	rs754593	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs754593-?	NR	3E-9		0.01397	[0.0094-0.0186] unit increase	Affymetrix [10847151] (imputed)	N
921	chr17	44054695	44054696	rs754593	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs754593-A	NR	2E-8		5.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr17	44056766	44056767	rs1981997	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	17q21.31	MAPT	rs1981997-G	0.77	9E-14		1.41	[1.28-1.56]	Illumina [439828]	N
921	chr17	44057594	44057595	rs3785884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q21.31	NR	rs3785884-A	0.230491	1E-93		0.045117	[0.041-0.049] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
921	chr17	44057594	44057595	rs3785884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q21.31	NR	rs3785884-A	0.23073	1E-96		0.045836	[0.042-0.05] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
921	chr17	44057886	44057886	rs547116051	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	17q21.31	NR	rs547116051-AC	0.0	2E-8		1.83	[1.49-2.26]	Affymetrix, Illumina [up to 17000000] (imputed)	N
921	chr17	44058927	44058928	rs2435207	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs2435207-A	NR	5E-10		6.224	z score decrease	Affymetrix [10847151] (imputed)	N
921	chr17	44059009	44059010	rs17651507	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q21.31	NA	rs17651507-A	0.7274	2E-20		0.0187	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
921	chr17	44061022	44061023	rs62063786	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	MAPT	rs62063786-A		1E-61		0.044	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
921	chr17	44061893	44061894	rs2435210	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs2435210-T	NR	2E-8		0.01485	[0.0097-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
921	chr17	44062602	44062603	rs6503453	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs6503453-?	NR	3E-9		0.010352	[0.0069-0.0138] unit decrease	Affymetrix [805426] (imputed)	N
921	chr17	44063243	44063244	rs2435211	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	17q21.31	MAPT	rs2435211-T		4E-9		1.023	[NR]	Affymetrix [up to 79000000] (imputed)	N
921	chr17	44064850	44064851	rs8079215	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs8079215-?	NR	1E-9		0.01063	[0.0072-0.014] unit decrease	Affymetrix [805426] (imputed)	N
921	chr17	44065262	44065263	rs713522	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs713522-T	NR	1E-11		6.804	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr17	44065739	44065740	rs919462	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17q21.31	WNT3, MAPT, PLEKHM1	rs919462-C	NR	1E-26		0.168393	[0.14-0.2] unit decrease	Affymetrix [27512692] (imputed)	N
921	chr17	44066171	44066172	rs112385572	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	CRHR1, KANSL1, MAPT, PLEKHM1, SPPL2C, STH	rs112385572-G	NR	8E-29		0.0768246	NR unit decrease	NR [NR] (imputed)	N
921	chr17	44066860	44066860	rs368506132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.31	MAPT	rs368506132-CA	0.213518	4E-12		0.02103202	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
921	chr17	44067381	44067382	rs2258689	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q21.31		rs2258689-T	0.809	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
921	chr17	44068491	44068492	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	5E-8		0.0182514	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
921	chr17	44068491	44068492	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	2E-8		0.0187504	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
921	chr17	44068491	44068492	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	2E-11		0.0226537	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
921	chr17	44068491	44068492	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	4E-12		0.0233655	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
921	chr17	44071850	44071851	rs2435200	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs2435200-G	NR	3E-9		0.010362	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
921	chr17	44071850	44071851	rs2435200	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs2435200-?	NR	6E-9		0.01363	[0.009-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
921	chr17	44073888	44073889	rs1052553	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	17q21.31	MAPT	rs1052553-G	0.232	2E-15		0.879		Illumina [715631] (imputed)	N
921	chr17	44073888	44073889	rs1052553	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	17q21.31	MAPT	rs1052553-G	0.232	2E-15		0.879		Illumina [715631] (imputed)	N
921	chr17	44073888	44073889	rs1052553	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	17q21.31	Intergenic	rs1052553-A	0.76	8E-8		1.1235955		Illumina [135870]	N
921	chr17	44074585	44074586	rs12051901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	MAPT	rs12051901-A	NR	7E-10		0.0219012	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
921	chr17	44074585	44074586	rs12051901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	MAPT	rs12051901-A	NR	4E-10		0.0222448	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
921	chr17	44076062	44076063	rs2471738	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs2471738-?	NR	6E-9	(right fusiform)			NR [9227495] (imputed)	N
921	chr17	44076062	44076063	rs2471738	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q21.31	NR	rs2471738-T	NR	5E-8		5.463	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
921	chr17	44076062	44076063	rs2471738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs2471738-?	NR	6E-15		0.013463	[0.01-0.017] unit decrease	Affymetrix [805426] (imputed)	N
921	chr17	44076062	44076063	rs2471738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs2471738-T	NR	2E-9		6.034	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr17	44077850	44077851	rs56108300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.31	NR	rs56108300-A	0.224125	1E-24		0.023682	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
921	chr17	44078617	44078618	rs117499775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q21.31		rs117499775-C	NR	4E-9		0.0337	[0.022-0.045] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
921	chr17	44078617	44078618	rs117499775	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.31	MAPT	rs117499775-T	0.959835	6E-9		0.0282696	[0.019-0.038] unit increase	Affymetrix [NR] (imputed)	N
921	chr17	44078981	44078982	rs2435201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs2435201-T	NR	4E-8		0.0157709	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
921	chr17	44078981	44078982	rs2435201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs2435201-T	NR	3E-8		0.016056	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
921	chr17	44078981	44078982	rs2435201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs2435201-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
921	chr17	44078981	44078982	rs2435201	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs2435201-A	NR	4E-12		6.944	z score decrease	Affymetrix [10847151] (imputed)	N
921	chr17	44080353	44080354	rs2471739	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q21.31	STH	rs2471739-T	0.8059	3E-8		0.018065117	[0.012-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
921	chr17	44081063	44081064	rs8070723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q21.31	NR	rs8070723-A	0.7848	4E-15		0.0162	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
921	chr17	44081063	44081064	rs8070723	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	MAPT	rs8070723-?	0.23	2E-118		5.11	[4.43-5.91]	Illumina [531451]	N
921	chr17	44081063	44081064	rs8070723	21044948	Spencer CC	2010-11-02	Hum Mol Genet	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	17q21.31	MAPT	rs8070723-?	0.76	7E-12		1.3	[1.19-1.43]	Illumina [532616]	N
921	chr17	44083401	44083402	rs1991556	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	17q21.31	MAPT, STH	rs1991556-A	0.22	5E-23		0.012	[0.01-0.014] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
921	chr17	44083401	44083402	rs1991556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q21.31		rs1991556-?	NR	1E-53				NR [~ 8900000] (imputed)	N
921	chr17	44083401	44083402	rs1991556	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	17q21.31	STH	rs1991556-G	0.774711	3E-9		0.03280479	[0.022-0.044] SD units increase	NR [9926106] (imputed)	N
921	chr17	44083947	44083948	rs8067056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q21.31		rs8067056-C	NR	3E-8		0.0369	[0.024-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
921	chr17	44083947	44083948	rs8067056	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q21.31	MAPT	rs8067056-T	0.62	2E-12		7.06	z-score increase	Affymetrix [4314223] (imputed)	N
921	chr17	44083947	44083948	rs8067056	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs8067056-?	NR	6E-9	(total brain volume)			NR [9227495] (imputed)	N
921	chr17	44083947	44083948	rs8067056	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs8067056-T	NR	1E-12		0.012341	[0.0089-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
921	chr17	44083947	44083948	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs8067056-C	NR	4E-10		0.01542	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
921	chr17	44083947	44083948	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs8067056-T	NR	1E-20		9.322	z score decrease	Affymetrix [10847151] (imputed)	N
921	chr17	44083947	44083948	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs8067056-?	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
921	chr17	44083947	44083948	rs8067056	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs8067056-T	NR	3E-8		5.557	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr17	44084007	44084008	rs12946693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q21.31		rs12946693-C	NR	4E-16		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
921	chr17	44084007	44084008	rs12946693	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q21.31	MAPT	rs12946693-T	0.45	5E-12		6.9	z-score increase	Affymetrix [4311822] (imputed)	N
921	chr17	44084402	44084403	rs56087321	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	17q21.31	NR	rs56087321-C	0.3908	1E-17		0.0172	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
921	chr17	44086266	44086267	rs4792897	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs4792897-A	0.8262	3E-8		1.0416667	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
921	chr17	44091779	44091780	rs66499584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs66499584-?	NR	2E-11				NR [~ 8900000] (imputed)	N
921	chr17	44091987	44091988	rs62062271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q21.31		rs62062271-C	NR	1E-93		0.0399	[0.036-0.044] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
921	chr17	44091987	44091988	rs62062271	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17q21.31	NR	rs62062271-T	0.77	5E-9		1.09	NR	NR [8853336] (imputed)	N
921	chr17	44091987	44091988	rs62062271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.31	MAPT	rs62062271-C	0.228578	9E-66		0.04680153	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
921	chr17	44091987	44091988	rs62062271	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q21.31	NR	rs62062271-C	0.22819699999999998	5E-18		0.0305695	[0.024-0.038] unit increase	Affymetrix [16577313] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	MAPT	rs58879558-C	0.229934	2E-53		0.046372186	[0.04-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	MAPT	rs58879558-C	0.229817	5E-28		0.03697445	[0.03-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.250777	1E-130				Affymetrix, Illumina [24332387] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.232575	2E-128		0.053	[0.049-0.057] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.249796	6E-91				Affymetrix, Illumina [24653286] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.250229	6E-94				Affymetrix, Illumina [24558453] (imputed)	N
921	chr17	44095466	44095467	rs58879558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	17q21.31	NR	rs58879558-C	0.22989199999999999	2E-9		0.0225798	[0.016-0.03] unit increase	Affymetrix [16577424] (imputed)	N
921	chr17	44095466	44095467	rs58879558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs58879558-?	NR	3E-98				NR [~ 8900000] (imputed)	N
921	chr17	44096552	44096553	rs62062288	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	17q21.31	MAPT	rs62062288-?	NR	2E-14		0.097	[0.072-0.122] unit increase	NR [7682250] (imputed)	N
921	chr17	44096552	44096553	rs62062288	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.2181	7E-22		0.01863	[0.015-0.022] unit increase	NR [8968716] (imputed)	N
921	chr17	44096552	44096553	rs62062288	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q21.31	KANSL1	rs62062288-A	0.2207	1E-29		0.035170935	[0.029-0.041] unit decrease	Affymetrix [~ 11515000] (imputed)	N
921	chr17	44096552	44096553	rs62062288	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	17q21.31	KANSL1	rs62062288-A	0.2196	1E-12		0.019352188	[0.014-0.025] unit decrease	Affymetrix [11514463] (imputed)	N
921	chr17	44096552	44096553	rs62062288	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	17q21.31	CRHR1, DND1P1, ENSG00000262372, ENSG00000262500, ENSG00000262881, KANSL1, MAPT, MAPT-AS1, NSF, PLEKHM1, SPPL2C, STH, RP11-105N13.4, WNT3	rs62062288-A	NR	5E-10		6.21	[NR] z score decrease	NR [16213998]	N
921	chr17	44096552	44096553	rs62062288	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	17q21.31	MAPT	rs62062288-A	NR	2E-9		0.008	[0.006-0.01] unit decrease	NR [16213998]	N
921	chr17	44096552	44096553	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
921	chr17	44096552	44096553	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	STH	rs62062288-A	0.211505	6E-32		11.77	z score increase	NR [10847151] (imputed)	N
921	chr17	44096552	44096553	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	1E-9		6.079	unit increase	NR [10847151] (imputed)	N
921	chr17	44096552	44096553	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	7E-10		6.17	z score increase	NR [10847151] (imputed)	N
921	chr17	44098966	44098967	rs17652520	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	MAPT	rs17652520-A	NR	5E-12		0.013847	[0.0099-0.0178] unit decrease	Affymetrix [18485882] (imputed)	N
921	chr17	44098966	44098967	rs17652520	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	17q21.31	MAPT	rs17652520-A	0.231386	8E-13		0.05570984	[0.04-0.071] unit increase	Affymetrix [7288503] (imputed)	N
921	chr17	44098966	44098967	rs17652520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17q21.31		rs17652520-?	NR	2E-27				NR [~ 8900000] (imputed)	N
921	chr17	44098966	44098967	rs17652520	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs17652520-A	0.2216	1E-25		10.472	z score increase	Illumina [18485882] (imputed)	N
921	chr17	44102583	44102584	rs113815715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs113815715-T	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
921	chr17	44102682	44102682	rs5820605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA			rs5820605-CT	NR	3E-50		0.03	[0.026-0.034] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
921	chr17	44102682	44102682	rs5820605	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA			rs5820605-CT	NR	2E-46		0.0288	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA		MAPT	rs5820605-CT	0.413083	4E-28		0.0227092	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA		MAPT, KANSL1, ARL17B, LRRC37A, LRRC37A2, ARL17A	rs5820605-?	NR	5E-9		0.00131565	[-0.00357-0.0062] unit increase	Affymetrix [25921788] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA		MAPT, KANSL1, ARL17B, LRRC37A, LRRC37A2, ARL17A	rs5820605-?	NR	5E-9		0.0144678	[0.0096-0.0193] unit increase	Affymetrix [25921788] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA		NR	rs5820605-CT	0.41384299999999996	3E-13		0.00601742	[0.0044-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA		NR	rs5820605-CT	0.414393	4E-11		0.00831192	[0.0059-0.0107] unit increase	Affymetrix [16585854] (imputed)	N
921	chr17	44102682	44102682	rs5820605	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA		NR	rs5820605-CT	0.41384299999999996	1E-7		0.00516371	[0.0034-0.007] unit increase	Affymetrix [16582965] (imputed)	N
921	chr17	44104615	44104615	rs35853889	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	MAPT	rs35853889-TG	0.19	1E-20				NR [9312144] (imputed)	N
921	chr17	44105726	44105727	rs117379709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs117379709-A	NR	5E-10		0.0634	[0.043-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr17	44106792	44106792	rs368385820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs368385820-TA	NR	2E-8		0.0169386	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
921	chr17	44116842	44116843	rs16940845	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.31	KANSL1	rs16940845-C	0.605528	3E-21		0.00215716	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
921	chr17	44121578	44121579	rs72836318	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q21.31	NR	rs72836318-C	0.246	7E-9	(Conditioned on chr17:44793283)	0.017122326	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
921	chr17	44126672	44126673	rs112333322	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs112333322-A	0.214965	4E-19		8.94	z score decrease	NR [10847151] (imputed)	N
921	chr17	44126764	44126765	rs113434679	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	17q21.31	KANSL1, MAPT	rs113434679-A	0.22119	9E-13		0.311323	[0.23-0.4] unit decrease	Illumina [9911207] (imputed)	N
921	chr17	44126764	44126765	rs113434679	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs113434679-C	NR	3E-21		0.016272	[0.013-0.02] unit increase	Affymetrix [18485882] (imputed)	N
921	chr17	44131095	44131096	rs11654745	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q21.31	KANSL1	rs11654745-A	NR	5E-8		0.0227274	[0.014-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
921	chr17	44140131	44140132	rs115110322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs115110322-C	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
921	chr17	44150151	44150152	rs974295	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	KANSL1	rs974295-T	NR	3E-11		0.013331	[0.0094-0.0173] unit decrease	Affymetrix [18485882] (imputed)	N
921	chr17	44158089	44158091	rs372176508	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs372176508-C	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
921	chr17	44161469	44161470	rs80028338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs80028338-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
921	chr17	44162596	44162597	rs8080583	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	17q21.31	KANSL1	rs8080583-?	NR	1E-8		5.717	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
921	chr17	44164322	44164323	rs55692232	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	17q21.31	NR	rs55692232-A	0.205	7E-21		0.020043388	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
921	chr17	44166078	44166080	rs201408539	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	17q21.31	KANSL1	rs201408539-?	NR	8E-20		1.338	[1.257-1.425]	Illumina [13436641] (imputed)	N
921	chr17	44166764	44166764	rs377351806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.31	KANSL1	rs377351806-CTTT	0.197748	1E-24		0.029962147	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
921	chr17	44166764	44166764	rs377351806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q21.31	KANSL1	rs377351806-CTTT	0.197805	3E-26		0.03087574	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
921	chr17	44167365	44167366	rs10775404	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	KANSL1	rs10775404-?	NR	3E-21		0.01638	[0.013-0.02] unit decrease	Affymetrix [805426] (imputed)	N
922	chr17	44172811	44172812	rs60521849	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	17q21.31	NR	rs60521849-A	0.3986	5E-12		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
922	chr17	44173502	44173502	rs776509440	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs776509440-?	NR	3E-21		0.0286931	[0.023-0.035] unit increase	Affymetrix [20259828] (imputed)	N
922	chr17	44173502	44173502	rs776509440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q21.31	KANSL1	rs776509440-ATTC	0.1747	4E-16		0.04245703	[0.032-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44173502	44173502	rs776509440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17q21.31	KANSL1	rs776509440-ATTC	0.1746	7E-25		0.05390152	[0.044-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44173502	44173502	rs776509440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q21.31	KANSL1	rs776509440-ATTC	0.1747	9E-24		0.05232802	[0.042-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44173502	44173502	rs776509440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q21.31	KANSL1	rs776509440-ATTC	0.1746	2E-25		0.05453698	[0.044-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44173502	44173502	rs776509440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q21.31	KANSL1	rs776509440-ATTC	0.1747	2E-18		0.04563918	[0.035-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44179094	44179095	rs113564729	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	17q21.31	KANSL1	rs113564729-A		2E-11		0.0994	[0.07-0.129] unit increase	Illumina [NR]	N
922	chr17	44183314	44183315	rs376991420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	KANSL1	rs376991420-A	0.625614	9E-11		0.016512228	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr17	44183316	44183317	rs371996525	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17q21.31		rs371996525-?	NR	4E-48				NR [9705931] (imputed)	N
922	chr17	44183402	44183403	rs111676341	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs111676341-A	0.240557	2E-11		0.049241845	[0.035-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
922	chr17	44184827	44184828	rs4510068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q21.31		rs4510068-T	0.497172	4E-26		0.0380186	[0.031-0.045] unit decrease	Illumina [13476266] (imputed)	N
922	chr17	44184827	44184828	rs4510068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	KANSL1	rs4510068-T	NR	7E-10		0.0197993	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
922	chr17	44184827	44184828	rs4510068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	KANSL1	rs4510068-T	NR	6E-10		0.0199076	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
922	chr17	44184827	44184828	rs4510068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs4510068-T	NR	2E-9		0.0176279	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
922	chr17	44184827	44184828	rs4510068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	17q21.31	NR	rs4510068-G	0.498966	2E-22		0.039886	[0.032-0.048] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
922	chr17	44186062	44186063	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	5E-18		0.041183	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
922	chr17	44186062	44186063	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	4E-16		0.038921	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
922	chr17	44186062	44186063	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	4E-13		0.0345078	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
922	chr17	44186062	44186063	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	1E-16		0.0389871	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
922	chr17	44186477	44186478	rs117754181	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	KANSL1	rs117754181-?	NR	2E-9		0.010104	[0.0068-0.0134] unit decrease	Affymetrix [805426] (imputed)	N
922	chr17	44186951	44186952	rs9904766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	KANSL1	rs9904766-T	NR	2E-9		0.019001	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
922	chr17	44186951	44186952	rs9904766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	KANSL1	rs9904766-T	NR	1E-9		0.0192377	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
922	chr17	44187256	44187257	rs9303525	22504418	Ikram MA	2012-04-15	Nat Genet	Common variants at 6q22 and 17q21 are associated with intracranial volume.	Intracranial volume	8,175 European ancestry individuals	1,752 European ancestry individuals	17q21.31	MAPT, GRN, CRHR1, STH	rs9303525-G	0.22	8E-15		14.9	[NR] ml decrease	Affymetrix, Illumina [2229753] (imputed)	N
922	chr17	44187491	44187492	rs17577094	24842889	Vacic V	2014-05-19	Hum Mol Genet	Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.	Parkinson's disease	1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls	306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls	17q21.31	MAPT	rs17577094-?	0.74	8E-9		1.56	[1.39-1.79]	Affymetrix, Illumina [1069161] (imputed)	N
922	chr17	44189066	44189067	rs7225002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs7225002-G	NR	5E-8		0.0156309	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
922	chr17	44189066	44189067	rs7225002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	KANSL1	rs7225002-G	0.41453	1E-21		0.027102236	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
922	chr17	44189066	44189067	rs7225002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.31	KANSL1	rs7225002-G	0.41472	3E-24		0.022808008	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr17	44189066	44189067	rs7225002	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	KANSL1	rs7225002-A	0.6094	2E-40		0.1351	[0.12-0.15] unit increase	NR [7784415] (imputed)	N
922	chr17	44189066	44189067	rs7225002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs7225002-?		5E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
922	chr17	44189066	44189067	rs7225002	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs7225002-A	NR	3E-8		0.0096215	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
922	chr17	44189066	44189067	rs7225002	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.31	KANSL1	rs7225002-G	0.4084	5E-8		1.0180612		Affymetrix [11880941] (imputed)	N
922	chr17	44189066	44189067	rs7225002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs7225002-?	NR	7E-78				NR [~ 8900000] (imputed)	N
922	chr17	44189066	44189067	rs7225002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.31		rs7225002-?	NR	3E-30				NR [~ 8900000] (imputed)	N
922	chr17	44189066	44189067	rs7225002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs7225002-A	NR	6E-9		5.823	z score decrease	Affymetrix [10847151] (imputed)	N
922	chr17	44189066	44189067	rs7225002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs7225002-?	NR	3E-9		0.01401	[0.0094-0.0186] unit increase	Affymetrix [10847151] (imputed)	N
922	chr17	44189597	44189598	rs2016034	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs2016034-A	NR	1E-8		5.677	z score decrease	Affymetrix [10847151] (imputed)	N
922	chr17	44189857	44189858	rs76640332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.31	KANSL1	rs76640332-A	0.222	5E-13		0.03067547	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44189909	44189910	rs78929339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	17q21.31		rs78929339-G	NR	9E-13		0.0559	[0.041-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
922	chr17	44191482	44191483	rs11653367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	KANSL1	rs11653367-G	NR	1E-12		0.0236608	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
922	chr17	44191482	44191483	rs11653367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	KANSL1	rs11653367-G	NR	8E-13		0.0239226	[0.017-0.03] unit decrease	Affymetrix [127266] (imputed)	N
922	chr17	44191482	44191483	rs11653367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.31		rs11653367-?	NR	1E-10				NR [~ 8900000] (imputed)	N
922	chr17	44192567	44192568	rs4630591	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	ACBD4	rs4630591-T	0.198844	1E-17		8.54	z score increase	NR [10847151] (imputed)	N
922	chr17	44192589	44192590	rs35524223	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q21.31	KANSL1	rs35524223-A	0.2166	7E-13		0.059	[0.043-0.075] unit decrease	Affymetrix [27624732] (imputed)	N
922	chr17	44192589	44192590	rs35524223	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q21.31	KANSL1	rs35524223-A	0.22	1E-13		0.061	[0.045-0.077] unit decrease	Affymetrix [up to 27624732] (imputed)	N
922	chr17	44192617	44192618	rs4606752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q21.31	KANSL1	rs4606752-G	0.2266	1E-17		0.03608263	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44192617	44192618	rs4606752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q21.31	KANSL1	rs4606752-G	0.2267	2E-16		0.03470527	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44192922	44192923	rs17577369	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	NR	rs17577369-A	0.2157	4E-12		6.96	z score decrease	NR [10847151] (imputed)	N
922	chr17	44192956	44192957	rs17661015	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs17661015-T	0.215131	4E-12		6.93	z score decrease	NR [~ 10847151] (imputed)	N
922	chr17	44192956	44192957	rs17661015	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs17661015-T	0.215131	3E-28		11.02	z score decrease	NR [10847151] (imputed)	N
922	chr17	44202370	44202375	rs150649471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.31	KANSL1	rs150649471-A	0.629733	2E-15		0.01833474	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
922	chr17	44204605	44204606	rs78746179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs78746179-?	NR	4E-10				NR [~ 8900000] (imputed)	N
922	chr17	44204605	44204606	rs78746179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs78746179-?	NR	9E-17				NR [~ 8900000] (imputed)	N
922	chr17	44205689	44205690	rs4471723	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs4471723-T	0.219254	5E-9		5.84	z score increase	NR [10847151] (imputed)	N
922	chr17	44206664	44206665	rs4792831	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	FOXO3	rs4792831-?		4E-20				NR [7428630] (imputed)	N
922	chr17	44207931	44207932	rs79301522	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs79301522-A	0.217029	1E-30		11.51	z score decrease	NR [10847151] (imputed)	N
922	chr17	44212908	44212909	rs34258265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	KANSL1	rs34258265-A	0.548498	5E-13		0.020897444	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
922	chr17	44214887	44214888	rs2077551	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	17q21.31	MAPT	rs2077551-T	0.814	3E-16		1.4084507	[1.3-1.54]	Affymetrix, Illumina [10790934] (imputed)	N
922	chr17	44221835	44221836	rs2696589	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2696589-T	0.19528	3E-25		10.371	z score increase	Illumina [18485882] (imputed)	N
922	chr17	44222018	44222019	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	2E-11		0.00690241	[0.0049-0.0089] years increase	NR [7400000] (imputed)	N
922	chr17	44222018	44222019	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	2E-30		0.0164537	[0.014-0.019] years increase	NR [7400000] (imputed)	N
922	chr17	44222018	44222019	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	4E-6		0.00525027	[0.003-0.0075] years decrease	NR [7400000] (imputed)	N
922	chr17	44222018	44222019	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17q21.31		rs2222746-T	NR	9E-28		0.047721766	[0.039-0.056] years increase	NR [7400000] (imputed)	N
922	chr17	44222045	44222045	rs143437112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.31	KANSL1	rs143437112-TA	0.405392	2E-10		0.016003625	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr17	44224939	44224940	rs80103986	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	17q21.31	KANSL1	rs80103986-A	0.805	1E-9		0.171	[0.12-0.23] kg increase	Affymetrix [at least 17000000] (imputed)	N
922	chr17	44227392	44227393	rs2696579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q21.31	KANSL1	rs2696579-A	0.3375	2E-9		0.02406112	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44227392	44227393	rs2696579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q21.31	KANSL1	rs2696579-A	0.3371	5E-10		0.02511521	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr17	44238616	44238624	rs534754110	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs534754110-?		3E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
922	chr17	44243869	44243870	rs62060891	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q21.31	NR	rs62060891-C	0.2215	1E-17				NR [9056863] (imputed)	N
922	chr17	44245765	44245766	rs2696658	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	KIF18B, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, ARHGAP27, PLEKHM1, CRHR1, SPPL2C, MAPT, STH, KANSL1, ARL17B, LRRC37A, LRRC37A2, ARL17A, NSF, WNT3	rs2696658-?		2E-65				NR [7428630] (imputed)	N
922	chr17	44248768	44248769	rs1881193	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs1881193-T	0.21737	1E-18		8.84	z score decrease	NR [10847151] (imputed)	N
922	chr17	44248836	44248837	rs35643216	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	KANSL1	rs35643216-C		2E-56		0.046	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
922	chr17	44252467	44252468	rs2532263	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs2532263-G	NR	4E-20		0.015798	[0.012-0.019] unit increase	Affymetrix [18485882] (imputed)	N
922	chr17	44252467	44252468	rs2532263	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	KANSL1	rs2532263-G	0.81	7E-13	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
922	chr17	44256295	44256296	rs2532253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	KANSL1	rs2532253-A	0.196735	2E-18		0.032460287	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
922	chr17	44262495	44262496	rs8064802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q21.31		rs8064802-C	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
922	chr17	44269545	44269546	rs2732596	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	KANSL1	rs2732596-T	NR	5E-11		0.013165	[0.0092-0.0171] unit decrease	Affymetrix [18485882] (imputed)	N
922	chr17	44273652	44273653	rs62060954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	17q21.31		rs62060954-T	0.839881	5E-10		0.036063	[0.025-0.047] unit increase	NR [11722792] (imputed)	N
922	chr17	44283570	44283571	rs2696455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs2696455-C	0.804129	4E-8		0.0266681	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
922	chr17	44284056	44284057	rs2696457	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs2696457-T	0.215657	6E-10		6.186	unit increase	NR [10847151] (imputed)	N
922	chr17	44285530	44285531	rs2469933	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	17q21.31	KIAA1267	rs2469933-A	0.225	2E-22		0.0295	[0.024-0.035] unit decrease	Illumina [~ 250000] (imputed)	N
922	chr17	44285843	44285844	rs2696461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs2696461-C	NR	4E-10		0.0181891	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
922	chr17	44287372	44287373	rs2668690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs2668690-G	0.808461	3E-8		0.028132	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
922	chr17	44287372	44287373	rs2668690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs2668690-G	0.808457	1E-10		0.0343133	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
922	chr17	44289231	44289232	rs2732631	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q21.31	KANSL1	rs2732631-?	NR	3E-35		0.959	[0.8-1.12] unit decrease	Affymetrix [11100000] (imputed)	N
923	chr17	44304129	44304130	rs2532402	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration)	88,411 European ancestry individuals	NA	17q21.31		rs2532402-G	0.221	2E-12		0.04	unit increase	Affymetrix [8951705] (imputed)	N
923	chr17	44304129	44304130	rs2532402	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Moderate to vigorous physical activity duration	88,411 European ancestry individuals	NA	17q21.31		rs2532402-G	0.221	2E-10		0.035	unit increase	Affymetrix [8951705] (imputed)	N
923	chr17	44310964	44310965	rs12452789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	17q21.31	NR	rs12452789-T	0.524918	1E-13		0.036852	[0.027-0.047] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
923	chr17	44311106	44311107	rs2532389	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs2532389-G	NR	1E-9		1.074	[1.05-1.099]	Affymetrix [7846216] (imputed)	N
923	chr17	44313521	44313522	rs2532387	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q21.31		rs2532387-G	0.781	1E-19				Affymetrix [10369434] (imputed)	N
923	chr17	44313756	44313757	rs2532386	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	KANSL1, LRRC37A	rs2532386-?	NR	4E-8				NR [~ 24000000] (imputed)	N
923	chr17	44318183	44318184	rs2696668	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs2696668-A	0.215905	1E-26		10.68	z score decrease	NR [10847151] (imputed)	N
923	chr17	44322959	44322960	rs2668637	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000262500	rs2668637-A	NR	2E-10		0.010891	[0.0075-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
923	chr17	44323045	44323046	rs2732716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q21.31	RP11-259G18.2	rs2732716-C	0.6328	9E-10		0.02356132	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
923	chr17	44326863	44326864	rs2696625	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	17q21.31		rs2696625-A	0.77	5E-12		0.31	[0.22-0.4] unit decrease	Affymetrix [8918919] (imputed)	N
923	chr17	44326863	44326864	rs2696625	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	17q21.31	KANSL1-AS1	rs2696625-A	0.77	3E-12		0.037	[0.027-0.047] SD units decrease	NR [9926106] (imputed)	N
923	chr17	44331213	44331214	rs2957316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	17q21.31		rs2957316-C	NR	5E-8		0.2809	[0.18-0.38] unit decrease	Affymetrix, Illumina [25843031] (imputed)	N
923	chr17	44331213	44331214	rs2957316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	17q21.31		rs2957316-C	NR	3E-9		0.2644	[0.18-0.35] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
923	chr17	44332350	44332351	rs2950015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs2950015-G	0.227758	6E-48		0.040000007	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
923	chr17	44332350	44332351	rs2950015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs2950015-G	0.227742	2E-55		0.041690093	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
923	chr17	44332792	44332793	rs71375338	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.31		rs71375338-G	0.73	3E-16				Affymetrix [10369434] (imputed)	N
923	chr17	44332792	44332793	rs71375338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs71375338-A	0.268548	3E-20		0.023166748	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
923	chr17	44332792	44332793	rs71375338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs71375338-A	0.259541	3E-22				Affymetrix, Illumina [23114412] (imputed)	N
923	chr17	44332958	44332959	rs12953096	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs12953096-?	NR	7E-10	(right fusiform)			NR [9227495] (imputed)	N
923	chr17	44334706	44334707	rs2458179	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	17q21.31	intergenic	rs2458179-?	NR	7E-6	(SF9)			Affymetrix [5476100] (imputed)	N
923	chr17	44335578	44335579	rs139077859	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	17q21.31		rs139077859-G	0.79	2E-8		0.033	[0.021-0.045] unit decrease	Affymetrix [8918919] (imputed)	N
923	chr17	44335634	44335635	rs147431626	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs147431626-?		4E-13	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
923	chr17	44335866	44335867	rs2532353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	17q21.31	NR	rs2532353-G	0.550104	3E-19		0.050724	[0.04-0.062] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
923	chr17	44337759	44337760	rs35031964	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000262539	rs35031964-A	NR	2E-13		0.012707	[0.0093-0.0161] unit increase	Affymetrix [18485882] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		7E-11	(Average across all tracts)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		9E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		4E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Average across all tracts)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		5E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
923	chr17	44338782	44338783	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
923	chr17	44339472	44339473	rs2532349	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	17q21.31	KANSL1	rs2532349-G	0.242	2E-10		1.22	[1.15-1.29]	Affymetrix [28509962] (imputed)	N
923	chr17	44342122	44342123	rs2732677	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732677-?		5E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
923	chr17	44342122	44342123	rs2732677	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732677-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
923	chr17	44342377	44342378	rs4988900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	RP11-259G18.3, RP11-259G18.1	rs4988900-A	0.43436	3E-17		0.022074057	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
923	chr17	44342377	44342378	rs4988900	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ENSG00000261575	rs4988900-?	NR	3E-9		0.010394	[0.007-0.0138] unit increase	Affymetrix [805426] (imputed)	N
923	chr17	44343003	44343004	rs2950706	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	17q21.31	CRHR1, MAPT, WNT3	rs2950706-?	NR	7E-20		0.013745	[0.011-0.017] unit decrease	Affymetrix [NR] (imputed)	N
923	chr17	44343369	44343370	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		2E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
923	chr17	44343369	44343370	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		6E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
923	chr17	44343369	44343370	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
923	chr17	44343369	44343370	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		6E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
923	chr17	44343901	44343902	rs2532345	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q21.31	NR	rs2532345-A	0.293	5E-12		0.0122867	[0.0088-0.0158] unit decrease	NR [9732723] (imputed)	N
923	chr17	44343901	44343902	rs2532345	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ENSG00000261575	rs2532345-?	NR	3E-15		0.013842	[0.01-0.017] unit decrease	Affymetrix [805426] (imputed)	N
923	chr17	44344987	44344988	rs2732650	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	17q21.31	RP11-259G18.1	rs2732650-?	NR	3E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
923	chr17	44346406	44346407	rs2732655	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732655-?		1E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
923	chr17	44347217	44347218	rs2696557	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs2696557-A	0.214201	3E-15		7.91	z score increase	NR [10847151] (imputed)	N
923	chr17	44348633	44348634	rs112665297	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs112665297-?		1E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
923	chr17	44351386	44351387	rs2732708	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	NR	rs2732708-T	0.214039	3E-11		6.64	z score increase	NR [10847151] (imputed)	N
923	chr17	44351386	44351387	rs2732708	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2732708-T	0.21404	2E-23		9.955	z score increase	Illumina [18485882] (imputed)	N
923	chr17	44351685	44351686	rs2732706	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	17q21.31		rs2732706-T	0.221	4E-12		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
923	chr17	44353221	44353222	rs2732703	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q21.31		rs2732703-?	NR	3E-6		0.873		NR [98334]	N
923	chr17	44353221	44353222	rs2732703	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	17q21.31	MAPT	rs2732703-?	NR	1E-7		1.1627907	[1.23-1.1]	Affymetrix [up to 7055881] (imputed)	N
923	chr17	44353221	44353222	rs2732703	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q21.31	KANSL1, LRRC27A, MAPT	rs2732703-T	0.87	6E-9		1.369863	[1.23-1.54]	NR [NR]	N
923	chr17	44354548	44354549	rs2261201	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs2261201-C	0.214631	5E-12		6.91	z score decrease	NR [~ 10847151] (imputed)	N
923	chr17	44354903	44354904	rs2732699	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs2732699-C	0.8401	1E-10	(EA)	0.0595	[0.041-0.078] unit increase	Illumina [~ 11800000] (imputed)	N
923	chr17	44355601	44355602	rs2696532	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs2696532-A	0.212157	4E-8		5.49	z score decrease	NR [10847151] (imputed)	N
923	chr17	44356792	44356793	rs2696524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696524-?		5E-11	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
923	chr17	44357350	44357351	rs17665188	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs17665188-T	0.213949	1E-18		8.79	z score decrease	NR [10847151] (imputed)	N
923	chr17	44358487	44358489	rs201936061	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	ARL17A	rs201936061-T	0.0518	2E-12		0.6693	[0.48-0.85] mmHg increase	Affymetrix [NR] (imputed)	N
923	chr17	44358487	44358489	rs201936061	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	ARL17A	rs201936061-T	0.0523	9E-16		0.566	[0.43-0.7] mmHg increase	Affymetrix [NR] (imputed)	N
923	chr17	44359782	44359783	rs184837332	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q21.31		rs184837332-G	0.775	9E-14		0.1	[0.07-0.13] % increase	Affymetrix [NR] (imputed)	N
923	chr17	44363928	44363929	rs2696500	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs2696500-T	0.214048	4E-29		11.21	z score increase	NR [10847151] (imputed)	N
923	chr17	44364208	44364209	rs2732614	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	KIAA1267, LRRC37	rs2732614-T	0.2	8E-6		0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
923	chr17	44364208	44364209	rs2732614	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	KIAA1267, LRRC37	rs2732614-T	0.2	7E-6	(Ajusted for ApoE)	0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
923	chr17	44364648	44364649	rs2696497	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs2696497-T	0.21384	2E-15		7.92	z score increase	NR [10847151] (imputed)	N
923	chr17	44365521	44365521	rs572756998	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17q21.31	WNT3, MAPT, PLEKHM1	rs572756998-A	NR	3E-16		0.310199	[0.24-0.38] unit decrease	Affymetrix [27512692] (imputed)	N
923	chr17	44368211	44368212	rs2957297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs2957297-?	NR	2E-7		5.231	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
923	chr17	44368214	44368215	rs2732600	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	17q21.31		rs2732600-C	0.812781	3E-8		0.0276852	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
923	chr17	44368629	44368630	rs78625142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs78625142-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
923	chr17	44369419	44369420	rs7209589	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	17q21.31		rs7209589-?	NR	9E-24				NR [7857346] (imputed)	N
923	chr17	44387669	44387670	rs62073229	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 197)	19,670 European ancestry individuals	NA	17q21.31		rs62073229-?	NR	1E-13				NR [9705931] (imputed)	N
923	chr17	44388911	44388912	rs62073233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	17q21.31		rs62073233-G	0.78721	2E-9		0.0339922	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
923	chr17	44408003	44408004	rs1863114	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A	rs1863114-C		2E-50		0.045	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
923	chr17	44410242	44410243	rs273535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.31		rs273535-T	0.31118	1E-8		0.0140472	[0.0092-0.0189] unit decrease	Illumina [13479295] (imputed)	N
924	chr17	44515242	44515243	rs199491	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs199491-T	0.23781	6E-21		9.391	z score increase	Illumina [18485882] (imputed)	N
924	chr17	44521739	44521740	rs155779	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A, LRRC37A2, NSF	rs155779-A		1E-11		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
925	chr17	44566824	44566824	rs200442988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.31		rs200442988-TTTTG	NR	4E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
925	chr17	44572067	44572068	rs3874943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs3874943-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
925	chr17	44572067	44572068	rs3874943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.31	NR	rs3874943-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
925	chr17	44572067	44572068	rs3874943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.31		rs3874943-?	NR	1E-12				NR [~ 8900000] (imputed)	N
925	chr17	44572067	44572068	rs3874943	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	NSFP1	rs3874943-?	NR	7E-14		0.01303	[0.0096-0.0164] unit increase	Affymetrix [805426] (imputed)	N
925	chr17	44573373	44573374	rs2696685	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.31	NSFP1, ARL17A	rs2696685-?	NR	4E-8		0.020226918	[0.013-0.027] unit decrease	Illumina [27896057] (imputed)	N
925	chr17	44623788	44623789	rs144216645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q21.31	ARL17A, LRRC37A2	rs144216645-T	0.744281	3E-10		0.017155	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
925	chr17	44623788	44623789	rs144216645	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	17q21.31	STH, KANSL1, ARL17B, ARL17A, LRRC37A, LRRC37A2, NSF	rs144216645-?	NR	2E-8				Affymetrix [~ 15000000] (imputed)	N
925	chr17	44623788	44623789	rs144216645	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Left-handed vs. non-left-handed)	31,856 British ancestry cases, 299,181 British ancestry controls	NA	17q21.31	STH, KANSL1, ARL17B, ARL17A, LRRC37A, LRRC37A2, NSF	rs144216645-?	NR	1E-9				Affymetrix [~ 15000000] (imputed)	N
925	chr17	44625865	44625866	rs199913382	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A2	rs199913382-C		3E-54		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
925	chr17	44625927	44625928	rs1863115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	LRRC37A2	rs1863115-?	NR	7E-21		0.016585	[0.013-0.02] unit increase	Affymetrix [805426] (imputed)	N
925	chr17	44625927	44625928	rs1863115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs1863115-?	NR	6E-6		4.512	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
925	chr17	44627648	44627649	rs146980124	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q21.31	LRRC37A2	rs146980124-A	0.383726	3E-9		0.0102411	[0.0069-0.0136] unit increase	Affymetrix [12370749]	N
925	chr17	44632462	44632463	rs568039055	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	LRRC37A2, ARL17A	rs568039055-C	0.2	8E-15				NR [9312144] (imputed)	N
925	chr17	44632462	44632463	rs568039055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q21.31	NR	rs568039055-C	0.182422	9E-10		0.018382	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
925	chr17	44632462	44632463	rs568039055	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ARL17A	rs568039055-?	NR	2E-16		0.014099	[0.011-0.017] unit decrease	Affymetrix [805426] (imputed)	N
925	chr17	44633529	44633530	rs62073356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q21.31	ARL17A	rs62073356-C	0.5771	3E-32		0.04781853	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
925	chr17	44652347	44652348	rs558710130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs558710130-G	0.587726	1E-9				Affymetrix, Illumina [21126107] (imputed)	N
925	chr17	44652650	44652651	rs112458826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	17q21.31	NR	rs112458826-G	0.820417	1E-9		0.056205	[0.038-0.074] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
926	chr17	44699850	44699851	rs116956554	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q21.31	NSFP1	rs116956554-A	0.179849439222465	3E-12		0.0471	[0.034-0.06] SD increase	Illumina [22400000] (imputed)	N
926	chr17	44753024	44753025	rs199470	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs199470-?	NR	9E-10	(total brain volume)			NR [9227495] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		9E-11	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		5E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		3E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		7E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		5E-8	(External capsule )			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		2E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		2E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		9E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		4E-10	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		3E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199470-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
926	chr17	44753024	44753025	rs199470	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	NSF	rs199470-C	NR	6E-16		0.014231	[0.011-0.018] unit decrease	Affymetrix [18485882] (imputed)	N
926	chr17	44753349	44753350	rs117300236	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	17q21.31	NR	rs117300236-G	0.72	6E-9		0.25	[0.17-0.33] unit decrease	Affymetrix [9231066] (imputed)	N
926	chr17	44753349	44753350	rs117300236	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	17q21.31	NR	rs117300236-G	0.72	6E-9		0.25	[0.17-0.33] unit decrease	Affymetrix [9231066] (imputed)	N
926	chr17	44753349	44753350	rs117300236	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	17q21.31	NR	rs117300236-G	0.72	1E-7		0.3	[0.18-0.42] unit decrease	Affymetrix [9231066] (imputed)	N
926	chr17	44753642	44753643	rs374952396	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs374952396-G	0.248043	6E-14		0.035119	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
926	chr17	44764774	44764775	rs199460	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	17q21.31		rs199460-?	NR	3E-7		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
926	chr17	44764774	44764775	rs199460	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	17q21.31		rs199460-?	NR	7E-6		0.05	[0.026-0.074] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44764774	44764775	rs199460	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs199460-?	NR	5E-8		5.447	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
926	chr17	44773782	44773783	rs199441	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.31	NR	rs199441-A	0.215491	1E-181		0.109361	[0.1-0.12] unit decrease	NR [19129689] (imputed)	N
926	chr17	44773782	44773783	rs199441	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs199441-A	0.217502	4E-24		10.14	z score increase	NR [10847151] (imputed)	N
926	chr17	44773782	44773783	rs199441	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs199441-A	0.217502	6E-18		8.63	z score increase	NR [10847151] (imputed)	N
926	chr17	44773782	44773783	rs199441	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs199441-A	0.21750000000000003	3E-20		9.219	z score increase	Illumina [18485882] (imputed)	N
926	chr17	44782224	44782224	rs112396911	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	NSF	rs112396911-AGT		3E-52		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
926	chr17	44787311	44787312	rs1378358	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	17q21.31	NSF	rs1378358-T	0.2314	5E-13		1.3376309	1.22-1.47	Illumina [6530233] (imputed)	N
926	chr17	44787311	44787312	rs1378358	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	17q21.31	NSF	rs1378358-T	0.2314	7E-16		1.2813549	1.21-1.36	Illumina [6530233] (imputed)	N
926	chr17	44787311	44787312	rs1378358	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	NSF	rs1378358-?	NR	1E-31		2.0049	[1.67-2.34] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44787311	44787312	rs1378358	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q21.31	NR	rs1378358-T	0.217292507620124	2E-18		0.019632332	[0.015-0.024] unit increase	NR [NR]	N
926	chr17	44787311	44787312	rs1378358	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs1378358-T	0.206287	2E-27		10.86	z score increase	NR [10847151] (imputed)	N
926	chr17	44787311	44787312	rs1378358	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	GOSR2	rs1378358-T	0.206287	2E-8		5.619	unit increase	NR [10847151] (imputed)	N
926	chr17	44787311	44787312	rs1378358	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	NR	rs1378358-T	0.206287	2E-11		6.69	z score increase	NR [10847151] (imputed)	N
926	chr17	44787312	44787313	rs538628	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	17q21.31	NSF	rs538628-?		1E-43	(Global)			Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44787312	44787313	rs538628	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs538628-C	0.206782	9E-13		7.14	z score increase	NR [10847151] (imputed)	N
926	chr17	44787312	44787313	rs538628	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	ARL17A, LRRC37A2, NSF, WNT3	rs538628-C	NR	4E-27		0.0800835	NR unit decrease	NR [NR] (imputed)	N
926	chr17	44788309	44788310	rs183211	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	17q21.31	PLEKHM1	rs183211-A	0.24	2E-13		1.11	[1.07-1.16]	Illumina [up to 10962898] (imputed)	N
926	chr17	44788309	44788310	rs183211	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	intergenic	rs183211-A	0.23	3E-8		1.25	[1.16-1.35]	Illumina [2568349] (imputed)	N
926	chr17	44788309	44788310	rs183211	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	NR	rs183211-?	NR	3E-8				Illumina [2568349] (imputed)	N
926	chr17	44788309	44788310	rs183211	21812969	Liu X	2011-08-03	BMC Med Genet	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	17q21.31	NSF	rs183211-T	0.24	3E-7				Illumina [525124]	N
926	chr17	44790202	44790203	rs169201	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	17q21.31	NSF	rs169201-?		2E-13	(Global)			Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44793282	44793283	rs17692129	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	NSF	rs17692129-?	NR	2E-10	(EA)	1.0218	[0.71-1.33] unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44793282	44793283	rs17692129	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q21.31	NR	rs17692129-T	0.331	5E-13		0.019598922	[0.014-0.025] unit increase	NR [~ 10000000] (imputed)	N
926	chr17	44793282	44793283	rs17692129	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs17692129-T	NR	5E-8		5.453	z score decrease	Affymetrix [10847151] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs56755526-?	NR	1E-8	(total brain volume)			NR [9227495] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		7E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		9E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		2E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		1E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44793627	44793627	rs56755526	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs56755526-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
926	chr17	44797918	44797919	rs199456	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q21.31	NSF	rs199456-?	NR	3E-28		0.86	[0.7-1.02] unit decrease	Affymetrix [11100000] (imputed)	N
926	chr17	44800045	44800046	rs7224296	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	17q21.31	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs7224296-?		4E-10				NR [7428630] (imputed)	N
926	chr17	44800045	44800046	rs7224296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs7224296-?	NR	1E-103				NR [~ 8900000] (imputed)	N
926	chr17	44800045	44800046	rs7224296	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q21.31	NSF	rs7224296-A	NR	5E-9		0.01891837	[0.013-0.025] unit increase	Affymetrix [NR]	N
926	chr17	44800945	44800946	rs199453	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	NSF	rs199453-T	0.231	9E-67		0.2045	[0.18-0.23] unit decrease	NR [7784415] (imputed)	N
926	chr17	44808359	44808360	rs35937770	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs35937770-A	0.3211	2E-11	(total)	614.23035	[434.33-794.13] unit increase	Affymetrix, Illumina [NR]	N
926	chr17	44808359	44808360	rs35937770	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	NSF	rs35937770-?	NR	1E-16		0.014359	[0.011-0.018] unit decrease	Affymetrix [805426] (imputed)	N
926	chr17	44812187	44812188	rs199447	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs199447-T	NR	2E-26		10.659	z score increase	Affymetrix [10847151] (imputed)	N
926	chr17	44818954	44818954	rs113562005	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs113562005-?		2E-13	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
926	chr17	44818954	44818954	rs113562005	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs113562005-?		8E-9	(External capsule )			NR [8955960] (imputed)	N
926	chr17	44819564	44819565	rs199443	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs199443-T	0.20675	4E-13		7.26	z score increase	NR [10847151] (imputed)	N
926	chr17	44819564	44819565	rs199443	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	NSF	rs199443-T	0.2	4E-6		0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
926	chr17	44819564	44819565	rs199443	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	NSF	rs199443-T	0.2	3E-6	(Ajusted for ApoE)	0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
926	chr17	44819594	44819595	rs17698176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q21.31		rs17698176-G	NR	3E-14		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
926	chr17	44819594	44819595	rs17698176	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	17q21.31		rs17698176-?	NR	4E-8				NR [7857346] (imputed)	N
926	chr17	44819594	44819595	rs17698176	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs17698176-?	NR	5E-9	(right fusiform)			NR [9227495] (imputed)	N
926	chr17	44819594	44819595	rs17698176	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q21.31	NR	rs17698176-T	NR	2E-8		5.64	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
926	chr17	44819594	44819595	rs17698176	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs17698176-T	NR	2E-8		5.631	z score increase	Affymetrix [10847151] (imputed)	N
926	chr17	44822661	44822662	rs199535	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	17q21.31	NSF	rs199535-?		8E-18	(Fusiform)			Affymetrix, Illumina [NR] (imputed)	N
926	chr17	44826055	44826056	rs9896243	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs9896243-G	NR	2E-11		0.01934	[0.014-0.025] unit increase	Affymetrix [10847151] (imputed)	N
927	chr17	44828930	44828931	rs199533	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	17q21.31		rs199533-G	0.79	4E-8		0.25	[0.16-0.34] unit decrease	Affymetrix [8918919] (imputed)	N
927	chr17	44828930	44828931	rs199533	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q21.31		rs199533-?	NR	1E-7		0.859		NR [98334]	N
927	chr17	44828930	44828931	rs199533	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) (adjusted for APOE e4 carrier status)	10,216 European ancestry individuals	9,261 European ancestry individuals	17q21.31		rs199533-?	NR	4E-7		0.896		NR [110450]	N
927	chr17	44828930	44828931	rs199533	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs199533-G	NR	4E-7		1.06	[1.036-1.084]	Affymetrix [7846216] (imputed)	N
927	chr17	44828930	44828931	rs199533	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs199533-G	NR	5E-8		1.078	NR	Affymetrix [7846216] (imputed)	N
927	chr17	44828930	44828931	rs199533	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	17q21.31	MAPT	rs199533-C	0.78	1E-6		1.35	[1.19-1.52]	Illumina [811597]	N
927	chr17	44828930	44828931	rs199533	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	17q21.31	NSF	rs199533-C	0.83	1E-14		1.28	[NR]	Illumina [463185]	N
927	chr17	44830252	44830253	rs139970884	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q21.31		rs139970884-G	0.01149	3E-6		2.911	[1.865-4.545]	Affymetrix [7975321] (imputed)	N
927	chr17	44833216	44833217	rs35732828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q21.31	NR	rs35732828-A	NR	7E-11		0.0218	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44836301	44836302	rs9912530	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	17q21.31	WNT3	rs9912530-T	0.272	2E-10		0.091	[0.064-0.118] unit increase	Affymetrix, Illumina [NR] (imputed)	N
927	chr17	44837216	44837217	rs199529	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	NSF	rs199529-A	NR	3E-16		0.014192	[0.011-0.018] unit increase	Affymetrix [18485882] (imputed)	N
927	chr17	44837216	44837217	rs199529	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	17q21.31	NSF	rs199529-?	NR	4E-8		0.083	[0.053-0.113] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
927	chr17	44843135	44843136	rs199528	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	17q21.31	WNT3	rs199528-T	0.223	5E-21		0.0286	[0.023-0.035] unit decrease	Illumina [~ 250000] (imputed)	N
927	chr17	44847833	44847834	rs199525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	WNT3	rs199525-G	NR	2E-8		0.0193608	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
927	chr17	44847833	44847834	rs199525	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	17q21.31	NR	rs199525-T	NR	2E-20		9.262	NR z score increase	NR [9186920] (imputed)	N
927	chr17	44847833	44847834	rs199525	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	WNT3	rs199525-T	0.8	8E-9		20.32	[13.42-27.22] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44847833	44847834	rs199525	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	WNT3	rs199525-T	0.79	3E-7	(EA)	20.03	[12.41-27.65] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44847833	44847834	rs199525	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	WNT3	rs199525-T	0.8	1E-9		18.85	[12.81-24.89] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44847833	44847834	rs199525	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	WNT3	rs199525-T	0.79	2E-8	(EA)	19.16	[12.46-25.86] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44847833	44847834	rs199525	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	GOSR2	rs199525-T	0.207235	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
927	chr17	44848313	44848314	rs3809857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	WNT3	rs3809857-T	NR	3E-8		0.0166179	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
927	chr17	44848313	44848314	rs3809857	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q21.31	NR	rs3809857-T	0.323	9E-18		0.0103425	[0.008-0.0127] unit increase	NR [9732723] (imputed)	N
927	chr17	44848313	44848314	rs3809857	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	17q21.31	WNT3	rs3809857-T	NR	5E-6		0.0160172	[0.0092-0.0229] unit increase	Illumina [13520550] (imputed)	N
927	chr17	44849925	44849926	rs199522	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.31	NR	rs199522-G	0.0260496	3E-21		0.0920478	[0.073-0.111] unit decrease	NR [19129689] (imputed)	N
927	chr17	44852611	44852612	rs62074125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	WNT3	rs62074125-C	NR	3E-13		0.0260286	[0.019-0.033] unit decrease	Affymetrix [323858] (imputed)	N
927	chr17	44852611	44852612	rs62074125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	WNT3	rs62074125-C	NR	2E-13		0.0263488	[0.019-0.033] unit decrease	Affymetrix [127266] (imputed)	N
927	chr17	44852611	44852612	rs62074125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q21.31	WNT3	rs62074125-C	NR	4E-8		0.0194395	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
927	chr17	44852611	44852612	rs62074125	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	WNT3	rs62074125-?	NR	5E-12		0.012092	[0.0087-0.0155] unit increase	Affymetrix [805426] (imputed)	N
927	chr17	44856640	44856641	rs199515	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	17q21.31	WNT3	rs199515-?	NR	3E-17		1.32	[NR]	Illumina [2500000] (imputed)	N
927	chr17	44857351	44857352	rs199512	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (non-right-handed vs right-handed)	44,631 European ancestry non-right-handed individuals, 356,567 European ancestry right-handed individuals	NA	17q21.31	WNT3, MAPT, MAPT-AS1	rs199512-?	NR	5E-8				NR [~ 11000000] (imputed)	N
927	chr17	44857351	44857352	rs199512	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (left-handed vs. right-handed)	38,322 European ancestry left-handed individuals, 356,567 European ancestry right-handed individuals	NA	17q21.31	WNT3, MAPT, MAPT-AS1	rs199512-C	0.791	4E-9		1.06	[1.04-1.07]	NR [~ 11000000] (imputed)	N
927	chr17	44857351	44857352	rs199512	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (Left-handed vs. non-left-handed)	38,322 European ancestry left-handed individuals, 362,866 European ancestry right-handed individuals	NA	17q21.31	WNT3, MAPT, MAPT-AS1	rs199512-?	NR	5E-8				NR [~ 11000000] (imputed)	N
927	chr17	44857928	44857929	rs199510	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q21.31		rs199510-A	0.238	3E-10		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
927	chr17	44858598	44858599	rs376907784	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs376907784-?		2E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
927	chr17	44858598	44858599	rs376907784	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs376907784-?		1E-9	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
927	chr17	44858598	44858599	rs376907784	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs376907784-?		2E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
927	chr17	44858598	44858599	rs376907784	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs376907784-?		5E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
927	chr17	44859143	44859144	rs415430	21812969	Liu X	2011-08-03	BMC Med Genet	Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population.	Parkinson's disease	268 Ashkenazi Jewish cases, 178 Ashkenazi Jewish controls	1,782 European ancestry cases, 1,658 European ancestry controls	17q21.31	WNT3	rs415430-T	0.786	7E-7				Illumina [525124]	N
927	chr17	44859409	44859410	rs199505	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs199505-?	NR	1E-18		0.02469	[0.019-0.03] unit increase	Affymetrix [10847151] (imputed)	N
927	chr17	44860020	44860021	rs70600	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs70600-T	0.20718	3E-11		6.65	z score increase	NR [~ 10847151] (imputed)	N
927	chr17	44861002	44861003	rs199504	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	17q21.31	WNT3	rs199504-?		6E-13	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
927	chr17	44862161	44862162	rs199503	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	17q21.31		rs199503-A	0.2481	2E-8		42.190483	z score increase	NR [6814003]	N
927	chr17	44862161	44862162	rs199503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	WNT3	rs199503-A	NR	1E-10		0.0220732	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
927	chr17	44862161	44862162	rs199503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	WNT3	rs199503-A	NR	1E-10		0.0221947	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
927	chr17	44862161	44862162	rs199503	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	17q21.31		rs199503-?	NR	3E-9		0.0179	NR unit decrease	NR [4484088] (imputed)	N
927	chr17	44862612	44862613	rs199501	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	17q21.31	WNT3	rs199501-A	0.22413	8E-12		0.794626	[0.743956-0.848747}	Illumina [1465938] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	6E-24		0.0297	[0.024-0.035] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	1E-18		0.0259	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	1E-11		0.0191	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	2E-13		0.0216	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	3E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44862612	44862613	rs199501	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q21.31	NR	rs199501-G	NR	1E-12		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
927	chr17	44863132	44863133	rs916888	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs916888-T	0.265408	6E-10		0.04400125	[0.03-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
927	chr17	44863132	44863133	rs916888	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31		rs916888-?	NR	5E-8	(EA)	21.56	[13.8-29.32] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44863132	44863133	rs916888	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	WNT3	rs916888-T	0.75	4E-9	(EA)	20.53	[13.71-27.35] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
927	chr17	44863132	44863133	rs916888	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q21.31	WNT3	rs916888-T	NR	2E-8		0.019683955	[0.013-0.027] unit increase	Affymetrix [NR]	N
927	chr17	44863132	44863133	rs916888	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	17q21.31	WNT3	rs916888-?	NR	8E-8		0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [8037763] (imputed)	N
927	chr17	44863132	44863133	rs916888	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	17q21.31	WNT3	rs916888-T	0.75	4E-6		1.35		Illumina [4903804] (imputed)	N
927	chr17	44863132	44863133	rs916888	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q21.31	WNT3	rs916888-T	0.763	5E-6		0.051	NR unit increase	Illumina [NR] (imputed)	N
927	chr17	44863412	44863413	rs199500	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199500-?		3E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
927	chr17	44863412	44863413	rs199500	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs199500-?		2E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
927	chr17	44865438	44865439	rs2074404	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	WNT3	rs2074404-?	NR	2E-17		1.418	[1.09-1.75] unit increase	Affymetrix, Illumina [NR] (imputed)	N
927	chr17	44865438	44865439	rs2074404	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs2074404-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
927	chr17	44865438	44865439	rs2074404	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	WNT3	rs2074404-T	NR	6E-13		0.012507	[0.0091-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
927	chr17	44865438	44865439	rs2074404	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	WNT3	rs2074404-T	NR	2E-10		6.362	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
927	chr17	44865438	44865439	rs2074404	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	17q21.31	intergenic	rs2074404-?	0.75	1E-6		1.11	[1.06-1.16]	Illumina [292387]	N
927	chr17	44865497	44865498	rs199499	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q21.31	WNT3	rs199499-C	0.81	6E-6		1.1627907	[1.09-1.23]	NR [NR]	N
927	chr17	44865602	44865603	rs199498	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs199498-C	0.2094	2E-8	(EA)	0.0433	[0.028-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
927	chr17	44865602	44865603	rs199498	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	17q21.31	MAPT	rs199498-T	0.764	8E-7	(Familial)	1.69	[1.57-1.81]	Illumina [811597]	N
927	chr17	44865602	44865603	rs199498	24511991	Hill-Burns EM	2014-02-10	BMC Genomics	Identification of a novel Parkinson's disease locus via stratified genome-wide association study.	Parkinson's disease	1,565 European ancestry sproadic Parkinson's disease cases, 435 European ancestry familial Parkinson's disease cases, 1,986 European ancestry controls	1,528 European ancestry sporadic Parkinson's disease cases, 707 European ancestry familial Parkinson's disease cases, 796 European ancestry controls	17q21.31	MAPT	rs199498-T	0.764	2E-6		1.35	[1.25-1.45]	Illumina [811597]	N
927	chr17	44866601	44866602	rs199497	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	WNT3	rs199497-T	NR	2E-10		0.010905	[0.0076-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
927	chr17	44866601	44866602	rs199497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs199497-T	0.8232	6E-10	(MTAG)	0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
927	chr17	44866804	44866805	rs11658976	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	WNT3	rs11658976-A	0.5802	4E-8		0.0624	[0.04-0.085] unit decrease	NR [7784415] (imputed)	N
927	chr17	44868186	44868187	rs12452064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	WNT3	rs12452064-A	NR	2E-9		0.0190781	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
927	chr17	44868186	44868187	rs12452064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	WNT3	rs12452064-A	NR	3E-9		0.0190021	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
927	chr17	44868186	44868187	rs12452064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs12452064-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
927	chr17	44874452	44874453	rs1563304	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs1563304-T	0.1782	4E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
927	chr17	44874452	44874453	rs1563304	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17q21.31	WNT3	rs1563304-T	0.178	3E-12		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
927	chr17	44874452	44874453	rs1563304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1563304-T	NR	5E-12		6.9	z score increase	Affymetrix [10847151] (imputed)	N
927	chr17	44874452	44874453	rs1563304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	MAPT	rs1563304-T	0.172485	1E-11		6.76	z score increase	NR [10847151] (imputed)	N
927	chr17	44874452	44874453	rs1563304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	MAPT	rs1563304-T	0.172485	2E-10		6.37	z score increase	NR [10847151] (imputed)	N
927	chr17	44874452	44874453	rs1563304	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs1563304-T	0.17248	3E-10		6.281	z score increase	Illumina [18485882] (imputed)	N
927	chr17	44901448	44901449	rs9890413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs9890413-A	NR	6E-13		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr17	44906948	44906949	rs8069437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.32	WNT3	rs8069437-C	0.768828	3E-18		0.024038427	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr17	44906948	44906949	rs8069437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.32	WNT3	rs8069437-C	0.768833	6E-15		0.021651594	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
927	chr17	44906948	44906949	rs8069437	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.32	intergenic	rs8069437-T		1E-21		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
927	chr17	44906948	44906949	rs8069437	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.32	intergenic	rs8069437-T	0.214	2E-6		0.039	[0.023-0.055] unit increase	Affymetrix [7947838] (imputed)	N
927	chr17	44906948	44906949	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7693	5E-18		0.03670622	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr17	44906948	44906949	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7694	6E-16		0.03419867	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr17	44906948	44906949	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7693	3E-17		0.03561691	[0.027-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
927	chr17	44930027	44930028	rs141899337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.32		rs141899337-?	NR	5E-8				NR [~ 8900000] (imputed)	N
927	chr17	44931398	44931399	rs62071986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs62071986-T	NR	7E-20		0.0561	[0.044-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr17	44947755	44947756	rs60372268	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q21.32	WNT9B	rs60372268-A	0.7056	4E-10		0.0935	[0.064-0.123] unit increase	Affymetrix [~ 11900000] (imputed)	N
927	chr17	44949099	44949100	rs11079740	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	17q21.32	WNT9B	rs11079740-?	NR	9E-6		1.1	[NR]	Affymetrix [NR]	N
927	chr17	44952585	44952586	rs149949310	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17q21.32		rs149949310-?	NR	2E-7		2.97074	[2.56-3.38]	NR [680312]	N
927	chr17	44954983	44954984	rs11871306	33704824	Vandebergh M	2021-03-11	Ann Neurol	Genetic variation in WNT9B increases relapse hazard in multiple sclerosis.	Relapse in treatment-naive multiple sclerosis (time to event)	506 European or unknown ancestry individuals	485 individuals	17q21.32	WNT9B	rs11871306-C	0.02	2E-10		2.15	[1.70-2.78]	Illumina [7344935] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	NR	rs75230966-G		5E-9		0.54	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	NR	rs75230966-G		3E-7	(EA)	0.494	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.32	NR	rs75230966-G		1E-22		0.584	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	NR	rs75230966-G		9E-12		0.42	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	NR	rs75230966-G		4E-9	(EA)	0.381	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44967529	44967530	rs75230966	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.32	NR	rs75230966-G		2E-32		0.47	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	44972809	44972810	rs7216951	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	17q21.32	WNT3, WNT9B	rs7216951-T		1E-7		0.2	[0.12-0.28] unit decrease	Illumina [NR] (imputed)	N
928	chr17	44977039	44977040	rs12600562	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	17q21.32	LRRC37A2	rs12600562-?	NR	7E-7	(conditional on rs72728755, rs7552, rs2235370 and rs16957821)	0.03	[0.018-0.042] unit decrease	Illumina [at least 589945] (imputed)	N
928	chr17	44982080	44982081	rs197907	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.32	intergenic	rs197907-C	0.2778	2E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix [18391927] (imputed)	N
928	chr17	44982080	44982081	rs197907	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q21.32	WNT9B, GOSR2	rs197907-?	NR	2E-10		0.0337204	[0.023-0.044] unit increase	Illumina [4804024] (imputed)	N
928	chr17	44987044	44987045	rs4461138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q21.32		rs4461138-G	NR	2E-42		0.0272	[0.023-0.031] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
928	chr17	44987790	44987791	rs12453279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs12453279-T	NR	1E-32		0.0292	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr17	44993127	44993128	rs4968248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q21.32		rs4968248-A	NR	2E-24		0.0194	[0.016-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
928	chr17	44993127	44993128	rs4968248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q21.32		rs4968248-A	NR	8E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
928	chr17	44995533	44995534	rs11658276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.32		rs11658276-?	NR	1E-21				NR [~ 8900000] (imputed)	N
928	chr17	44996622	44996623	rs78198449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs78198449-G	NR	8E-11		0.0246	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr17	45005094	45005095	rs197920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q21.32		rs197920-T	NR	3E-9		0.0358	[0.024-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
928	chr17	45005094	45005095	rs197920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs197920-?	NR	2E-7				NR [~ 8900000] (imputed)	N
928	chr17	45005702	45005703	rs3785888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	17q21.32		rs3785888-T	0.503625	6E-16		0.0272469	[0.021-0.034] unit decrease	Illumina [13478792] (imputed)	N
928	chr17	45005702	45005703	rs3785888	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17q21.32	GOSR2, WNT9B	rs3785888-?	NR	4E-7		1.14	[1.03-1.27] (GENEVA cohort)	Illumina [6090031] (imputed)	N
928	chr17	45006111	45006112	rs10853087	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	17q21.32	GOSR2	rs10853087-?	NR	8E-17		0.0295	[0.023-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
928	chr17	45007747	45007748	rs117791180	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	17q21.32	GOSR2	rs117791180-T	0.034	4E-6		2.04	[1.51-2.77]	Affymetrix [NR] (imputed)	N
928	chr17	45008569	45008570	rs197922	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.32	GOSR2	rs197922-A		2E-12		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
928	chr17	45008934	45008935	rs1838105	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	17q21.32	GOSR2	rs1838105-A	0.39	1E-11		1.22		Illumina [803202]	N
928	chr17	45011156	45011157	rs7213526	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs7213526-T	0.4345	2E-29		0.0077	[0.0063-0.0091] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
928	chr17	45013270	45013271	rs17608766	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta distensibility	29,684 individuals	NA	17q21.32		rs17608766-T	0.857381	2E-9		0.0603438	[0.041-0.08] increase	Affymetrix [NR]	N
928	chr17	45013270	45013271	rs17608766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q21.32		rs17608766-C	NR	4E-35		0.0372	[0.031-0.043] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	8E-24	(26 ms)	0.0807266	[0.065-0.097] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	5E-32	(34 ms)	0.0950978	[0.079-0.111] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	3E-17	(18 ms)	0.0659755	[0.05-0.082] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	3E-16	(16 ms)	0.0641536	[0.048-0.08] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-31	(36 ms)	0.0943405	[0.078-0.11] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-28	(38 ms)	0.089811	[0.074-0.106] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-26	(40 ms)	0.0865019	[0.071-0.102] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-26	(28 ms)	0.0860103	[0.07-0.102] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-21	(24 ms)	0.0756234	[0.06-0.092] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-19	(22 ms)	0.0716498	[0.056-0.088] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-16	(46 ms)	0.0669923	[0.051-0.083] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-15	(14 ms)	0.0629587	[0.047-0.079] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-14	(50 ms)	0.0620805	[0.046-0.078] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	2E-14	(48 ms)	0.0621163	[0.046-0.078] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-8	(-10 ms)	0.0443229	[0.028-0.06] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-30	(32 ms)	0.092892	[0.077-0.109] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-28	(30 ms)	0.0895951	[0.074-0.105] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-25	(42 ms)	0.0850432	[0.069-0.101] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-21	(44 ms)	0.0783802	[0.062-0.094] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-17	(20 ms)	0.0687551	[0.053-0.085] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.864236	1E-10	(52 ms)	0.0525506	[0.037-0.068] unit increase	Affymetrix [10000000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		17q21.32	NR	rs17608766-C	0.14851	1E-11		0.099562	[0.071-0.128] unit decrease	Affymetrix [14134301] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		17q21.32	NR	rs17608766-C	0.14851	1E-24		0.15044	[0.12-0.18] unit decrease	Affymetrix [14134301] (imputed)	N
928	chr17	45013270	45013271	rs17608766	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 2)	18,096 European individuals		17q21.32	NR	rs17608766-C	0.14851	1E-8		0.083125	unit decrease	Affymetrix [14134301] (imputed)	N
928	chr17	45013270	45013271	rs17608766	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	17q21.32	GOSR2	rs17608766-C	0.145965	4E-9		0.06700288	[0.045-0.089] unit increase	Affymetrix [7288503] (imputed)	N
928	chr17	45013270	45013271	rs17608766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.32		rs17608766-?	NR	2E-46				NR [~ 8900000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.32		rs17608766-?	NR	1E-16				NR [~ 8900000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	GOSR2	rs17608766-C	0.8708	1E-22		0.4971	[0.4-0.6] mmHg decrease	Affymetrix [NR] (imputed)	N
928	chr17	45013270	45013271	rs17608766	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	17q21.32	GOSR2	rs17608766-C	0.133322	1E-44		0.672279	[0.58-0.77] ms increase	Illumina [162199]	N
928	chr17	45013270	45013271	rs17608766	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	17q21.32	GOSR2	rs17608766-C	0.13691975352896	9E-27		0.70616865	[0.58-0.84] ms increase	Illumina [213295]	N
928	chr17	45013270	45013271	rs17608766	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q21.32	GOSR2	rs17608766-T	0.8632	8E-10		0.0469	[0.032-0.062] unit decrease	Affymetrix [at least 7947838] (imputed)	N
928	chr17	45013270	45013271	rs17608766	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q21.32	GOSR2	rs17608766-T	0.8634	6E-10		0.0519	[0.035-0.068] unit decrease	NR [8041861] (imputed)	N
928	chr17	45013270	45013271	rs17608766	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q21.32	GOSR2	rs17608766-C	0.141	4E-13	(EA, initial)	0.774	[0.56-0.98] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
928	chr17	45013270	45013271	rs17608766	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q21.32	GOSR2	rs17608766-C	0.141	2E-15	(EA, initial)	0.554	[0.42-0.69] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
928	chr17	45013270	45013271	rs17608766	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Aortic root size	30,201 European ancestry individuals	14,002 European ancestry individuals	17q21.32	GOSR2	rs17608766-C	0.14	2E-10		0.0244	[0.017-0.032] cm increase	Affymetrix, Illumina [at least 283291] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		8E-7	(EA)	0.434	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		1E-8		0.484	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		2E-27		0.616	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		7E-10	(EA)	0.364	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		2E-12		0.397	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		3E-40		0.506	unit decrease	Affymetrix [at least 2696785] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q21.32	NR	rs17608766-?	NR	9E-9	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q21.32	NR	rs17608766-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	17q21.32	GOSR2	rs17608766-T	0.854	2E-15		0.658	[0.5-0.82] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
928	chr17	45013270	45013271	rs17608766	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	17q21.32	GOSR2	rs17608766-C		1E-7		0.3789246	[0.24-0.52] unit increase	Illumina [247039]	N
928	chr17	45013270	45013271	rs17608766	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.32	GOSR2	rs17608766-T	0.8563	3E-10		0.0314	unit decrease	Illumina [242296]	N
928	chr17	45013270	45013271	rs17608766	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T	0.84	4E-7	(European)	0.53	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
928	chr17	45013270	45013271	rs17608766	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	17q21.32	GOSR2	rs17608766-T		2E-6		0.48	[0.28-0.68] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
928	chr17	45013270	45013271	rs17608766	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	17q21.32	GOSR2	rs17608766-T	0.86	1E-10		0.556	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
928	chr17	45013270	45013271	rs17608766	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.32	GOSR2	rs17608766-T	0.91	6E-15	(Pulse Pressure)	0.534	[0.40-0.67] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
928	chr17	45013270	45013271	rs17608766	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.32	GOSR2	rs17608766-T	0.91	2E-7	(Mean Arterial Pressure)	0.364	[0.23-0.50] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
928	chr17	45013270	45013271	rs17608766	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	17q21.32	GOSR2	rs17608766-C	0.16	5E-10		0.53	[0.33-0.73] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
928	chr17	45017192	45017193	rs11874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17q21.32		rs11874-A	NR	2E-13		0.0647	[0.047-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
928	chr17	45017192	45017193	rs11874	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (anomalies of thoracic arteries and veins)	486 European ancestry cases, 8,486 European ancestry controls	NA	17q21.32	GOSR2	rs11874-?		7E-8		1.6	[1.35-1.92]	Affymetrix, Illumina [9216527] (imputed)	N
928	chr17	45017192	45017193	rs11874	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q21.32	GOSR2	rs11874-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
928	chr17	45017192	45017193	rs11874	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q21.32	GOSR2	rs11874-A	0.136094	2E-13		0.06468868	[0.047-0.082] unit increase	Affymetrix [7288503] (imputed)	N
928	chr17	45018462	45018463	rs1052586	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	17q21.32	GOSR2	rs1052586-T		2E-7		1.2820514		Illumina [31245]	N
928	chr17	45018462	45018463	rs1052586	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	17q21.32	GOSR2	rs1052586-T	0.52	2E-6		1.4285715		Illumina [31245]	N
928	chr17	45019730	45019731	rs6504622	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	17q21.32	GOSR2, WNT9B	rs6504622-?	NR	1E-7		1.1627907	[1.06-1.28] (GENEVA cohort)	Illumina [6090031] (imputed)	N
928	chr17	45046367	45046368	rs76774446	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q21.32	GOSR2	rs76774446-A	0.13	4E-9	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
928	chr17	45046367	45046368	rs76774446	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q21.32	GOSR2	rs76774446-A	0.13	1E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
928	chr17	45054563	45054564	rs12600452	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.32	GOSR2RPRML	rs12600452-A	0.2015	2E-9		1.0258279		Affymetrix [11880941] (imputed)	N
928	chr17	45055106	45055107	rs80335285	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	GOSR2	rs80335285-G	0.8796	4E-35		0.4936	[0.42-0.57] mmHg decrease	Affymetrix [NR] (imputed)	N
928	chr17	45057825	45057826	rs6504635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs6504635-A	NR	3E-21		0.0232	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr17	45058067	45058068	rs149662397	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs149662397-T	0.08	2E-7		0.1843	[0.12-0.25] unit increase	Illumina [11133794] (imputed)	N
928	chr17	45079188	45079189	rs9907781	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.32	NR	rs9907781-?	NR	5E-6		4.553	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
929	chr17	45091769	45091770	rs533030436	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	intergenic	rs533030436-G	0.6478	3E-8		0.2327	[0.15-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
929	chr17	45107162	45107163	rs6504676	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs6504676-A	NR	7E-6		0.0853	[0.048-0.123] unit increase	Illumina [11133794] (imputed)	N
929	chr17	45171047	45171048	rs2317376	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2317376-C	0.680038	2E-8		0.0535145	[0.034-0.073] decrease	Affymetrix [11014269] (imputed)	N
929	chr17	45177775	45177776	rs2678713	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	17q21.32	CDC27	rs2678713-T	0.46	1E-7	(African American)	0.21	0.13-0.29 unit decrease	Illumina [NR] (imputed)	N
929	chr17	45181840	45181841	rs8071420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q21.32	RP11-156P1.3	rs8071420-A	0.747148	8E-17		0.021430293	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr17	45195849	45195850	rs11079757	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Erythema nodosum in inflammatory bowel disease	103 European ancestry cases, 5,653 European ancestry controls	NA	17q21.32	JTGB3, MYL4, CCD27	rs11079757-A	NR	8E-6		2.2	[1.60-3.10]	Illumina [2017629] (imputed)	N
929	chr17	45213146	45213146	rs552380474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs552380474-T	0.880541	4E-8		0.0351508	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
930	chr17	45237082	45237083	rs142246099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.32		rs142246099-?	NR	3E-9				NR [~ 8900000] (imputed)	N
930	chr17	45252312	45252313	rs78505871	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.32	NR	rs78505871-?	NR	7E-7		0.0090629	[0.0055-0.0126] unit decrease	Affymetrix [805426] (imputed)	N
930	chr17	45260254	45260255	rs79048040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	CDC27	rs79048040-A	NR	4E-8		0.0237028	[0.015-0.032] unit decrease	Affymetrix [321016] (imputed)	N
930	chr17	45280801	45280802	rs117154502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs117154502-G	NR	1E-12		0.0358	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
930	chr17	45280801	45280802	rs117154502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs117154502-G	NR	8E-11		0.0342	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
930	chr17	45281256	45281257	rs17668126	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.32	NR	rs17668126-?	NR	2E-6		4.713	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
930	chr17	45290077	45290078	rs78033733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.32		rs78033733-?	NR	1E-8				NR [~ 8900000] (imputed)	N
930	chr17	45301883	45301884	rs150104728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.32		rs150104728-?	NR	3E-9				NR [~ 8900000] (imputed)	N
930	chr17	45309692	45309693	rs11079764	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs11079764-G	0.51337114610245	5E-6	(IGP63)	0.1833	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
930	chr17	45313544	45313545	rs74792869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.32	NR	rs74792869-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
930	chr17	45313544	45313545	rs74792869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.32	NR	rs74792869-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
930	chr17	45313544	45313545	rs74792869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.32		rs74792869-?	NR	1E-8				NR [~ 8900000] (imputed)	N
930	chr17	45316716	45316717	rs11652097	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q21.32	NR	rs11652097-C	NR	2E-6		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
930	chr17	45316716	45316717	rs11652097	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q21.32	NSF, WNT3, WNT9B, GOSR2, MIR5089, RPRML, CDC27, MYL4, EFCAB13, MRPL45P2, NPEPPS, KPNB1, TBKBP1, TBX21	rs11652097-T	0.370560518060822	4E-8		0.015542311	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
930	chr17	45323124	45323125	rs4144743	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q21.32	ITGB3	rs4144743-C	0.164	5E-6		0.022	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
930	chr17	45323124	45323125	rs4144743	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q21.32	ITGB3	rs4144743-C	0.162	5E-6	(EA)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
930	chr17	45329396	45329397	rs117107187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q21.32	ITGB3	rs117107187-G	0.0087	2E-10		0.1346571	[0.093-0.176] unit decrease	Affymetrix [~ 2500000] (imputed)	N
930	chr17	45329476	45329477	rs73316435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	17q21.32		rs73316435-T	NR	3E-14		0.0906	[0.067-0.114] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
930	chr17	45329476	45329477	rs73316435	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	17q21.32	ITGB3	rs73316435-T	0.179924	3E-14		0.09064142	[0.067-0.114] unit increase	Affymetrix [7288503] (imputed)	N
930	chr17	45329476	45329477	rs73316435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.32		rs73316435-?	NR	4E-12				NR [~ 8900000] (imputed)	N
930	chr17	45329476	45329477	rs73316435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	17q21.32		rs73316435-?	NR	6E-8				NR [~ 8900000] (imputed)	N
930	chr17	45330714	45330715	rs70940818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q21.32		rs70940818-A	0.009989	2E-15		0.13557	[0.1-0.17] unit decrease	Illumina [13478928] (imputed)	N
931	chr17	45351117	45351118	rs7209700	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs7209700-G	0.308782806263982	4E-7	(IGP59)	0.1681	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
931	chr17	45352293	45352294	rs8064871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.32	ITGB3	rs8064871-G	0.215847	4E-10		0.016777031	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr17	45352293	45352294	rs8064871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.32	ITGB3	rs8064871-G	0.215847	1E-10		0.017221149	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr17	45357488	45357489	rs2292867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs2292867-T	NR	2E-10		0.0252	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
931	chr17	45360729	45360730	rs5918	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs5918-C	NR	1E-10		0.0225	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr17	45361952	45361953	rs5917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	17q21.32	NR	rs5917-G	0.9897	4E-15		0.1513	[0.11-0.19] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
931	chr17	45365152	45365153	rs7218632	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.32	EFCAB13	rs7218632-G	0.350274219616565	2E-6		0.0026574	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
931	chr17	45367680	45367681	rs2292864	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	17q21.32	NR	rs2292864-T	0.0972	5E-7		0.0323	[0.02-0.045] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
931	chr17	45373843	45373844	rs7223956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	17q21.32		rs7223956-C	NR	4E-10		0.0902	[0.062-0.118] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
931	chr17	45374794	45374795	rs7220606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	ITGB3	rs7220606-A	NR	1E-8		0.0162537	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
931	chr17	45385011	45385012	rs3809863	27001270	Vishal M	2016-03-22	BMC Med Genomics	Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma.	Glaucoma (primary open-angle)	347 Indian ancestry cases, 354 Indian ancestry controls	319 Indian ancestry cases, 297 Indian ancestry controls	17q21.32	Intergenic	rs3809863-?		5E-6				Illumina [521873]	N
931	chr17	45391649	45391650	rs7209109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	ITGB3, RP11-290H9.4	rs7209109-G	NR	3E-13		0.0242107	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
931	chr17	45391803	45391804	rs7225700	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7225700-T	NR	6E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45391803	45391804	rs7225700	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7225700-T	0.355	2E-7	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45391803	45391804	rs7225700	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7225700-T	NR	1E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45391803	45391804	rs7225700	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7225700-T	0.355	2E-8	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45398017	45398018	rs113229779	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q21.32	ITGB3, EFCAB13	rs113229779-T		1E-12				Affymetrix, Illumina [17972582] (imputed)	N
931	chr17	45403056	45403057	rs12948299	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.32	NR	rs12948299-?	NR	4E-8	(right thalamus proper)			NR [9227495] (imputed)	N
931	chr17	45404915	45404916	rs148690811	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q21.32	ITGB3, EFCAB13, NPEPPS, TBX21	rs148690811-?		3E-8				NR [7428630] (imputed)	N
931	chr17	45409385	45409386	rs9905308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	ITGB3, EFCAB13	rs9905308-T	NR	2E-11		0.0192779	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
931	chr17	45409385	45409386	rs9905308	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Membrane-bound aminopeptidase P levels	21,758 European ancestry individuals	9,173 individuals	17q21.32		rs9905308-A	0.62	6E-14		0.1202	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
931	chr17	45419138	45419139	rs11652957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs11652957-G	NR	3E-20		0.0267	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
931	chr17	45419138	45419139	rs11652957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs11652957-G	NR	1E-11		0.0207	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr17	45419138	45419139	rs11652957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q21.32	NR	rs11652957-G	NR	2E-19		0.0261	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
931	chr17	45419138	45419139	rs11652957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q21.32	NR	rs11652957-G	NR	1E-17		0.0249	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
931	chr17	45425114	45425115	rs7206971	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	17q21.32		rs7206971-A	0.4639	5E-7		0.7737	[0.47-1.08] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr17	45425114	45425115	rs7206971	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7206971-G	NR	5E-22		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45425114	45425115	rs7206971	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7206971-G	0.515	2E-20	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45425114	45425115	rs7206971	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7206971-G	NR	3E-24		0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45425114	45425115	rs7206971	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs7206971-G	0.515	4E-23	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr17	45425114	45425115	rs7206971	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	17q21.32	OSBPL7	rs7206971-A	0.51	4E-10		0.038	[0.026-0.05] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr17	45425114	45425115	rs7206971	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	17q21.32	OSBPL7	rs7206971-A	0.51	4E-13		0.043	[0.031-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr17	45425114	45425115	rs7206971	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.32	OSBPL7	rs7206971-A	0.49	3E-7		0.029	[NR] unit increase	NR [NR] (imputed)	N
931	chr17	45425114	45425115	rs7206971	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	17q21.32	OSBPL7	rs7206971-A	0.49	1E-7		0.03	[NR] unit increase	NR [NR] (imputed)	N
931	chr17	45425114	45425115	rs7206971	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	17q21.32	OSBPL7	rs7206971-T	0.35	4E-9		0.87	[0.52-1.22] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr17	45425114	45425115	rs7206971	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	17q21.32	OSBPL7	rs7206971-A	0.49	1E-8		1.01	[0.62-1.4] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr17	45438951	45438952	rs6504872	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	17q21.32	EFCAB13	rs6504872-C	0.5298	2E-16				Affymetrix, Illumina [2331072] (imputed)	N
931	chr17	45443493	45443494	rs1912483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.32		rs1912483-?	NR	2E-7				NR [~ 8900000] (imputed)	N
931	chr17	45443493	45443494	rs1912483	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.32	EFCAB13	rs1912483-A	0.469	4E-6		0.029	[0.017-0.041] unit decrease	Affymetrix [7947838] (imputed)	N
931	chr17	45456928	45456929	rs59649848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q21.32		rs59649848-T	NR	3E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
931	chr17	45456928	45456929	rs59649848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q21.32		rs59649848-T	NR	2E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
931	chr17	45461460	45461461	rs113600793	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	17q21.32	NR	rs113600793-C	NR	8E-7		0.1771	[0.11-0.25] SD units decrease	NR [10700000] (imputed)	N
931	chr17	45461460	45461461	rs113600793	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	17q21.32	NR	rs113600793-C		6E-7		0.1814	[0.11-0.25] SD units decrease	NR [10700000] (imputed)	N
931	chr17	45461460	45461461	rs113600793	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	17q21.32	NR	rs113600793-C		9E-7		0.1829	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
931	chr17	45469186	45469187	rs72825681	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	321 European and unknown ancestry genotoxic compound-exposed cases, 286 European and unknown ancestry genotoxic compound-exposed controls, 333 European and unknown ancestry unexposed cases, 533 European and unknown ancestry unexposed controls	NA	17q21.32	ITGB3, NPEPPS, EFCAB13	rs72825681-?	NR	3E-6		2.0408163	[NR]	Illumina [> 2600000] (imputed)	N
931	chr17	45479445	45479446	rs12452315	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	17q21.32	EFCAB13	rs12452315-A	0.5252	2E-7		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
932	chr17	45497438	45497439	rs62076505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q21.32	Intergenic	rs62076505-A	0.3974	7E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
932	chr17	45503538	45503539	rs10514928	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	17q21.32	ITGB3, EFCAB13	rs10514928-?	NR	8E-6		0.29	[0.16-0.41] unit decrease	Illumina [> 2600000] (imputed)	N
932	chr17	45503538	45503539	rs10514928	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	17q21.32	NR	rs10514928-T	0.9449	2E-6		0.0397	[0.023-0.056] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
932	chr17	45505767	45505768	rs77489465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs77489465-C	NR	2E-10		0.0574	[0.04-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr17	45542664	45542665	rs562433131	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	17q21.32	MRPL45P2	rs562433131-G	0.0025	2E-8		0.165634	[0.11-0.22] unit increase	Affymetrix [up to 29454346] (imputed)	N
932	chr17	45562744	45562744	rs142627977	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q21.32	NR	rs142627977-C	0.508877	1E-26		0.0118166	[0.0096-0.014] unit increase	Affymetrix [16582621] (imputed)	N
932	chr17	45562744	45562744	rs142627977	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q21.32	NR	rs142627977-C	0.508877	5E-24		0.0120174	[0.0097-0.0144] unit increase	Affymetrix [16582614] (imputed)	N
932	chr17	45574360	45574361	rs9897063	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.32	MRPL45P2, NPEPPS	rs9897063-?		3E-9		0.0374	[0.025-0.05] unit increase	Illumina [31500000] (imputed)	N
932	chr17	45575205	45575206	rs9901869	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	17q21.32	NPEPPS, TBKBP1, TBX21	rs9901869-A	0.516	6E-15		1.14		Illumina [128935]	N
932	chr17	45575205	45575206	rs9901869	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	17q21.32	NPEPPS, TBKBP1, TBX21	rs9901869-A	0.516	2E-12	(EA)	1.15		Illumina [128935]	N
932	chr17	45578434	45578435	rs11869940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.32		rs11869940-A	0.543076	4E-9		0.0120839	[0.008-0.0161] unit increase	Illumina [13479295] (imputed)	N
932	chr17	45578434	45578435	rs11869940	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.32	MRPL45P2, NPEPPS	rs11869940-?	NR	1E-11		0.019686613	[0.014-0.025] unit increase	Illumina [27896057] (imputed)	N
932	chr17	45580137	45580138	rs4794283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.32		rs4794283-T	0.490521	2E-9		0.013553222	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
932	chr17	45592265	45592266	rs10048173	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.32	NR	rs10048173-G	0.512515	2E-80		0.0152652	[0.014-0.017] unit increase	Affymetrix [16582909] (imputed)	N
932	chr17	45592265	45592266	rs10048173	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.32	NR	rs10048173-G	0.512515	1E-60		0.0148438	[0.013-0.017] unit increase	Affymetrix [16582965] (imputed)	N
932	chr17	45597097	45597098	rs4794058	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	17q21.32	NPEPPS	rs4794058-A	0.52	1E-13		1.09		Illumina [161311]	N
932	chr17	45607571	45607572	rs2935183	24234648	Goris A	2013-11-13	Hum Mol Genet	No evidence for shared genetic basis of common variants in multiple sclerosis and amyotrophic lateral sclerosis.	Multiple sclerosis or amyotrophic lateral sclerosis	4,088 Multiple sclerosis cases, 3,762 Amyotrophic lateralsclerosis cases, 12,030 controls	NA	17q21.32	NPEPPS	rs2935183-?	NR	5E-7				NR [5440446] (imputed)	N
932	chr17	45607717	45607721	rs549295681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17q21.32		rs549295681-G	NR	2E-13		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
932	chr17	45609269	45609270	rs62073968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q21.32	NPEPPS	rs62073968-G	0.214	3E-12		0.03100656	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
932	chr17	45609549	45609550	rs549258056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.32	NPEPPS	rs549258056-T	0.0160090000000001	4E-12		0.064853445	[0.047-0.083] unit increase	Affymetrix [93095623] (imputed)	N
933	chr17	45616523	45616525	rs35152111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.32	NPEPPS	rs35152111-A	0.1708	1E-6		0.0425	[0.025-0.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
933	chr17	45617504	45617505	rs4794287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	NPEPPS	rs4794287-G	NR	1E-8		0.0201237	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
933	chr17	45621260	45621261	rs12451766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.32	NPEPPS	rs12451766-G	0.504042	4E-16		0.018359175	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
933	chr17	45629405	45629406	rs36043200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q21.32		rs36043200-A	NR	4E-26		0.0227	[0.019-0.027] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
933	chr17	45629405	45629406	rs36043200	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q21.32	NPEPPS	rs36043200-G	0.483302	1E-36		0.0264581	[0.022-0.031] unit increase	Affymetrix [NR] (imputed)	N
933	chr17	45629405	45629406	rs36043200	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q21.32	NPEPPS	rs36043200-G	0.483311	2E-43		0.028795	[0.025-0.033] unit increase	Affymetrix [NR] (imputed)	N
933	chr17	45632713	45632713	rs35596561	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q21.32	NR	rs35596561-CT	0.495063	8E-23		0.0245521	[0.02-0.03] unit increase	Affymetrix [16585745] (imputed)	N
933	chr17	45635238	45635239	rs9989466	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q21.32	NPEPPS	rs9989466-C	0.581774	3E-8		0.0110731	[0.0071-0.015] unit increase	Affymetrix [NR] (imputed)	N
933	chr17	45649396	45649397	rs151315594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.32	NPEPPS	rs151315594-C	0.0175110000000001	4E-10		0.05548985	[0.038-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr17	45651767	45651768	rs538903106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.32		rs538903106-T	0.988673	5E-8		0.110411	[0.071-0.15] unit decrease	NR [11722792] (imputed)	N
933	chr17	45654183	45654184	rs141415719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.32	NPEPPS	rs141415719-A	0.017591	6E-21		0.0829201	[0.066-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr17	45657581	45657582	rs62073988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q21.32	NPEPPS	rs62073988-T	0.211638	8E-34		0.033513516	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr17	45662382	45662383	rs10445374	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q21.32	NPEPPS	rs10445374-?	NR	2E-46		0.0367	[0.032-0.041] unit increase	Affymetrix [5701386] (imputed)	N
933	chr17	45664860	45664861	rs2611867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q21.32		rs2611867-G	NR	1E-32		0.0236	[0.02-0.028] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
933	chr17	45664860	45664861	rs2611867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	17q21.32		rs2611867-G	0.643286	5E-12		0.0260426	[0.019-0.033] unit decrease	Illumina [13476599] (imputed)	N
933	chr17	45666997	45666998	rs117952616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs117952616-?	NR	4E-24				NR [~ 8900000] (imputed)	N
933	chr17	45668508	45668509	rs62074014	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	17q21.32	NPEPPS	rs62074014-?	NR	3E-9		0.02651	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
933	chr17	45669523	45669524	rs3865314	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	17q21.32	NPEPPS	rs3865314-A	0.51	1E-8		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
933	chr17	45669523	45669524	rs3865314	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	17q21.32	NPEPPS	rs3865314-A	0.51	7E-9		0.032	[0.021-0.043] unit increase	Affymetrix [at least 8900000] (imputed)	N
933	chr17	45670311	45670312	rs4793836	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q21.32	Intergenic	rs4793836-A	0.4252	3E-21	(MTAG)	0.0171	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
933	chr17	45670311	45670312	rs4793836	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q21.32	Intergenic	rs4793836-G	0.5748	7E-22		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
933	chr17	45671777	45671778	rs149460787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.32		rs149460787-CT	0.489075	2E-10		0.0257315	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
933	chr17	45671777	45671778	rs149460787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs149460787-CT	0.489057	1E-9		0.0241842	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
933	chr17	45671777	45671778	rs149460787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.32		rs149460787-CT	0.489057	2E-10		0.0255591	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
933	chr17	45674686	45674687	rs8072100	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	17q21.32	ITGB3, C17orf57, TBKBP1, KPNB1, NPEPPS	rs8072100-A	NR	4E-7		5.059	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr17	45690350	45690351	rs12943464	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q21.32	NPEPPS	rs12943464-?	NR	2E-14	(subset analysis)			Illumina [130052]	N
933	chr17	45695242	45695242	rs1348518145	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	17q21.32	NPEPPS	rs1348518145-A	NR	3E-7		0.0363	unit decrease	Illumina [15409056] (imputed)	N
933	chr17	45702279	45702280	rs11079784	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.32	NPEPPS	rs11079784-C	NR	2E-27		1.1074	NR	Affymetrix, Illumina [8278136] (imputed)	N
933	chr17	45709374	45709375	rs9891111	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.32	Intergenic	rs9891111-C	0.4376	5E-16	(MTAG)	0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
933	chr17	45712217	45712218	rs4375701	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q21.32		rs4375701-C	0.517308	4E-9		0.0243117	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
933	chr17	45712217	45712218	rs4375701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	RP11-580I16.2	rs4375701-T	NR	8E-13		0.0201646	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
933	chr17	45722292	45722293	rs72831623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	17q21.32	NR	rs72831623-G	NR	1E-7		0.1973	[0.12-0.27] SD units decrease	NR [10700000] (imputed)	N
933	chr17	45722292	45722293	rs72831623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	17q21.32	NR	rs72831623-G		2E-7		0.1913	[0.12-0.26] SD units decrease	NR [10700000] (imputed)	N
933	chr17	45722292	45722293	rs72831623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	17q21.32	NR	rs72831623-G		3E-6		0.1803	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
933	chr17	45732604	45732605	rs11870935	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	17q21.32	EFCAB13	rs11870935-?	NR	2E-10		1.06	[0.74-1.38] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	6E-9				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	5E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	6E-6	(EA)	0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	1E-7		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	9E-8		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	6E-22				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	3E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	5E-24				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	3E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	2E-8	(EA)	0.98	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	2E-11		0.906	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	2E-8		0.894	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	7E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q21.32	KPNB1	rs11870935-A	NR	2E-7				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	7E-8				Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q21.32	KPNB1	rs11870935-A	NR	5E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	4E-7		0.004	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	2E-8	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q21.32	KPNB1	rs11870935-A	NR	2E-6	(EA)	0.007157	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45732604	45732605	rs11870935	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	17q21.32	NR	rs11870935-A	0.5257	8E-20				Affymetrix, Illumina [at least 2500000] (imputed)	N
933	chr17	45732604	45732605	rs11870935	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	17q21.32	KPNB1	rs11870935-G	0.47	2E-8	(EA)	0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr17	45732604	45732605	rs11870935	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	17q21.32	KPNB1	rs11870935-G	0.47	2E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr17	45735705	45735706	rs8078686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	17q21.32		rs8078686-C	0.66586	1E-11		0.0197517	[0.014-0.025] unit increase	Illumina [13479924] (imputed)	N
933	chr17	45735705	45735706	rs8078686	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	17q21.32	KPNB1	rs8078686-C	0.509	4E-11		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [NR] (imputed)	N
933	chr17	45735705	45735706	rs8078686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs8078686-T	NR	2E-22		0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
933	chr17	45735705	45735706	rs8078686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs8078686-T	0.487	1E-19	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
933	chr17	45735705	45735706	rs8078686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs8078686-T	NR	2E-25		0.045	unit increase	Affymetrix [at least 7091467] (imputed)	N
933	chr17	45735705	45735706	rs8078686	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q21.32	NR	rs8078686-T	0.487	8E-23	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
933	chr17	45737274	45737275	rs4264433	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.32	KPNB1	rs4264433-?		3E-14		0.0278	[0.021-0.035] unit decrease	Illumina [31500000] (imputed)	N
933	chr17	45737274	45737275	rs4264433	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q21.32	NR	rs4264433-T	0.514481	7E-62		0.019504	[0.017-0.022] unit increase	Affymetrix [16585854] (imputed)	N
933	chr17	45737274	45737275	rs4264433	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q21.32	NR	rs4264433-T	0.514481	3E-40		0.0186029	[0.016-0.021] unit increase	Affymetrix [16585866] (imputed)	N
934	chr17	45746386	45746386	rs76975491	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.32		rs76975491-C	0.485502	5E-12		0.0284648	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45746386	45746386	rs76975491	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	17q21.32		rs76975491-C	0.485489	2E-24		0.0399933	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
934	chr17	45746386	45746386	rs76975491	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.32		rs76975491-C	0.485502	1E-10		0.0264531	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
934	chr17	45748551	45748552	rs151275940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	KPNB1	rs151275940-A	NR	4E-14		0.0310929	[0.023-0.039] unit decrease	Affymetrix [321016] (imputed)	N
934	chr17	45748667	45748668	rs79980568	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	17q21.32	KPNB1	rs79980568-?	NR	6E-6		3.21	[2.02-5.08]	Illumina [654642] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	1E-11		0.0269887	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	4E-11		0.0257775	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	9E-15		0.0307984	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	9E-11		0.0266596	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	2E-9		0.0236266	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	2E-11		0.0263048	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	8E-13		0.0281858	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	1E-11		0.0277135	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	3E-8		0.0215121	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481637	1E-9		0.0240906	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	5E-12		0.0277173	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481634	1E-9		0.0237567	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
934	chr17	45750595	45750596	rs3809868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q21.32		rs3809868-G	0.481637	7E-12		0.0277285	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
934	chr17	45752309	45752310	rs7213086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17q21.32		rs7213086-G	NR	2E-12		0.034	[0.025-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
934	chr17	45752309	45752310	rs7213086	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	17q21.32	KPNB1	rs7213086-C	0.44498	4E-9		0.03320161	[0.022-0.044] unit decrease	Affymetrix [7288503] (imputed)	N
934	chr17	45752737	45752738	rs77142415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs77142415-G	0.474952	6E-11		0.0271451	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45752737	45752738	rs77142415	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs77142415-G	0.474952	1E-10		0.0267004	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	2E-14		0.0305531	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	9E-11		0.0264385	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	7E-16		0.0332235	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	4E-14		0.0302565	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	9E-13		0.0289581	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	4E-17		0.0347836	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	1E-16		0.034329	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	7E-16		0.032865	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	2E-16		0.0338379	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	9E-16		0.0322512	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	1E-12		0.02889	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	9E-16		0.0333063	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	1E-15		0.0333408	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	4E-15		0.0322759	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	3E-16		0.0336655	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	3E-11		0.026665	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	1E-11		0.0280476	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	9E-15		0.0318382	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	5E-13		0.0288929	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	6E-12		0.0276221	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q21.32		rs4794048-A	0.519202	8E-14		0.0299423	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45763072	45763073	rs4794048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.32		rs4794048-?	NR	8E-12				NR [~ 8900000] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-9		0.0253637	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-16		0.0341996	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-8		0.0230968	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-15		0.0331451	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-9		0.0249484	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	7E-16		0.0332629	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-16		0.0338404	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-13		0.0300426	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	7E-13		0.02882	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	4E-15		0.032517	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-13		0.0293207	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517344	1E-12		0.0275352	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-13		0.0303526	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517344	2E-9		0.0244343	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	6E-12		0.0285101	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-17		0.0355181	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	4E-11		0.0273959	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	9E-16		0.0334865	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-16		0.0343109	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517344	2E-8		0.0227535	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	7E-16		0.0334417	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-14		0.0317396	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-12		0.0295281	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-10		0.026687	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-14		0.0320119	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-9		0.0245323	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-15		0.0333444	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-14		0.0319717	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-14		0.0315715	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	4E-15		0.0323897	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	6E-11		0.0272039	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-15		0.0328022	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	8E-13		0.0297438	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	5E-16		0.0338263	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-14		0.0319088	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	3E-15		0.0329902	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	2E-15		0.0327246	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	17q21.32		rs56325564-G	0.517309	1E-15		0.0332508	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
934	chr17	45766770	45766771	rs56325564	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q21.32	KPNB1	rs56325564-A	0.4569	4E-8		0.0148	[0.0095-0.0201] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
934	chr17	45768835	45768836	rs8070463	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	17q21.32	KPNB1, TBX21, TBKBP1	rs8070463-T	0.50	1E-7		1.15	[NR]	Affymetrix, Illumina [2529394]	N
934	chr17	45768835	45768836	rs8070463	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	17q21.32	TBKBP1	rs8070463-C	0.51	5E-8				Illumina [2223620] (imputed)	N
934	chr17	45772880	45772881	rs141891247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q21.32		rs141891247-G	NR	2E-11		0.0663	[0.047-0.086] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
934	chr17	45772880	45772881	rs141891247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.32	TBKBP1	rs141891247-G	0.015798	1E-11		0.06359828	[0.045-0.082] unit increase	Affymetrix [93095623] (imputed)	N
934	chr17	45781798	45781799	rs4561509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	17q21.32		rs4561509-G	0.497705	2E-9		0.0242782	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
934	chr17	45786451	45786452	rs4794057	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	17q21.32		rs4794057-C	0.482741	2E-8		0.0226899	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	3E-16		0.0207	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	1E-23		0.0266	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	4E-20		0.0243	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	4E-11		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	1E-22		0.0259	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	4E-19		0.0227	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q21.32	NR	rs1808192-G	NR	2E-20		0.0235	[0.019-0.028] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Human herpes virus 7 U14 antibody levels	8,528 White British ancestry individuals	NA	17q21.32	TBKBP1	rs1808192-A	0.329	7E-9		0.09	[0.059-0.121] unit decrease	NR [25472218] (imputed)	N
934	chr17	45794705	45794706	rs1808192	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q21.32	NR	rs1808192-A	NR	6E-9		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
934	chr17	45794705	45794706	rs1808192	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	17q21.32	TBKBP1, TBX21	rs1808192-A	0.3319	3E-6		0.0386	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q21.32	TBKBP1, TBX21	rs1808192-?	NR	3E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
934	chr17	45794705	45794706	rs1808192	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q21.32	TBKBP1, TBX21	rs1808192-A	0.3275	2E-8		0.0227	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
934	chr17	45799577	45799578	rs4461115	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.32	TBX21	rs4461115-C	0.275192955613659	7E-8		0.0032336	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
934	chr17	45800176	45800177	rs9893629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	TBX21	rs9893629-C	NR	6E-11		0.0195387	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
934	chr17	45800298	45800299	rs7219420	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	17q21.32	NR	rs7219420-?	NR	5E-6		0.0614	[0.035-0.088] unit increase	Illumina [at least 560000] (imputed)	N
934	chr17	45805810	45805811	rs62074057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs62074057-G	NR	3E-9		0.0209	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr17	45805810	45805811	rs62074057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs62074057-G	NR	4E-11		0.0243	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45805810	45805811	rs62074057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs62074057-G	NR	3E-19		0.033	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
934	chr17	45805810	45805811	rs62074057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q21.32	NR	rs62074057-G	NR	4E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr17	45805810	45805811	rs62074057	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q21.32	NR	rs62074057-G	NR	6E-12		0.0243	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr17	45805915	45805916	rs11079786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	17q21.32		rs11079786-?	NR	9E-16				NR [~ 8900000] (imputed)	N
934	chr17	45811353	45811354	rs41444548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.32		rs41444548-?	NR	4E-13				NR [~ 8900000] (imputed)	N
934	chr17	45811353	45811354	rs41444548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q21.32	TBX21	rs41444548-G	0.0746	2E-11		0.04575172	[0.032-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr17	45811353	45811354	rs41444548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q21.32	TBX21	rs41444548-G	0.0746	4E-10		0.04268554	[0.029-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr17	45811548	45811549	rs41519545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.32		rs41519545-?	NR	7E-8				NR [~ 8900000] (imputed)	N
934	chr17	45813293	45813294	rs72648866	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	17q21.32	TBX21	rs72648866-?	NR	4E-6		3.37	[2.13-5.34]	Illumina [654642] (imputed)	N
934	chr17	45816107	45816108	rs72648871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.32		rs72648871-?	NR	3E-11				NR [~ 8900000] (imputed)	N
934	chr17	45819205	45819206	rs56308324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q21.32	NR	rs56308324-T	0.130681	2E-10		0.017813	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
934	chr17	45819205	45819206	rs56308324	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.32	NR	rs56308324-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
934	chr17	45819205	45819206	rs56308324	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	17q21.32	TBX21, TBKBP1, OSBPL7	rs56308324-T	0.132	3E-9		1.132	[1.086-1.180]	Affymetrix [10894596] (imputed)	N
934	chr17	45819205	45819206	rs56308324	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.32	TBX21	rs56308324-T	NR	1E-9		1.063	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
934	chr17	45820722	45820723	rs11079788	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	17q21.32	TBX21	rs11079788-T	0.221	3E-15		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
934	chr17	45830947	45830948	rs12950390	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs12950390-C	0.252525314541387	3E-6	(IGP59)	0.1687	[0.098-0.239] unit decrease	Illumina [~ 2500000] (imputed)	N
934	chr17	45835277	45835278	rs11651000	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs11651000-G	0.840287136139722	8E-6	(IGP11)	0.1911	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
934	chr17	45835277	45835278	rs11651000	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs11651000-G	0.840144331241596	8E-6	(IGP51)	0.1906	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
934	chr17	45835277	45835278	rs11651000	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs11651000-G	0.83992863016158	9E-6	(IGP46)	0.1897	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
934	chr17	45870374	45870375	rs4424943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs4424943-A	0.172651	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
934	chr17	45873048	45873049	rs72833417	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	17q21.32		rs72833417-T	0.131	4E-9		1.1		Affymetrix, Illumina [9397031] (imputed)	N
934	chr17	45873048	45873049	rs72833417	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q21.32	TBX21, OSBPL7	rs72833417-T	0.131448532520151	5E-10		0.061788354	[0.042-0.081] unit increase	Affymetrix [35186738] (imputed)	N
934	chr17	45873048	45873049	rs72833417	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q21.32	OSBPL7	rs72833417-T	0.13	1E-11				NR [> 9500000] (imputed)	N
934	chr17	45873048	45873049	rs72833417	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q21.32	OSBPL7	rs72833417-T	0.12717599999999996	3E-12		1.0665832	1.04741269729047-1.08610451190362]	NR [9572556] (imputed)	N
934	chr17	45873048	45873049	rs72833417	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.32	EFCAB13, KPNB1, LRRC46, MRPL10, MRPL45P2, NPEPPS, OSBPL7, SCRN2, SP6, TBKBP1, TBX21	rs72833417-T	0.131302	1E-9		1.0596658	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
934	chr17	45873048	45873049	rs72833417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.32		rs72833417-?	NR	4E-9				NR [~ 8900000] (imputed)	N
935	chr17	45877798	45877799	rs8078668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.32		rs8078668-A	0.533999	2E-12		0.0158579	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr17	45880491	45880492	rs11650576	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.32	OSBPL7	rs11650576-T	0.0766	2E-6		0.0617	[0.037-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
935	chr17	45880747	45880748	rs4794160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	OSBPL7	rs4794160-T	NR	1E-8		0.0192497	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
935	chr17	45880747	45880748	rs4794160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs4794160-T	NR	9E-10		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr17	45881196	45881197	rs7223732	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs7223732-C	NR	8E-11		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
935	chr17	45885440	45885441	rs72833429	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.32	NR	rs72833429-G	0.370063	2E-12		0.0225809	[0.016-0.029] unit decrease	NR [19129689] (imputed)	N
935	chr17	45885755	45885756	rs9911983	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	17q21.32	OSBPL7	rs9911983-?		5E-8				Illumina [5041948] (imputed)	N
935	chr17	45885755	45885756	rs9911983	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q21.32	OSBPL7	rs9911983-C	0.433426851041322	5E-8		0.0397	[0.025-0.054] unit decrease	NR [5035015] (imputed)	N
935	chr17	45887737	45887738	rs16948401	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs16948401-A	0.344572	6E-6	(females)	0.01196	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45887737	45887738	rs16948401	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs16948401-A	0.344572	4E-6		0.00751	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45887737	45887738	rs16948401	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs16948401-A	0.344572	7E-7		0.006986	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45887737	45887738	rs16948401	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs16948401-A	0.344572	1E-6	(females)	0.01213	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45888250	45888251	rs2074188	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs2074188-G	0.481043	7E-10		0.01078	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45888250	45888251	rs2074188	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs2074188-G	0.481043	4E-11	(females)	0.01874	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45888250	45888251	rs2074188	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs2074188-G	0.481043	4E-8		0.008612	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45888250	45888251	rs2074188	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.32	OSBPL7	rs2074188-G	0.481043	1E-9	(females)	0.01698	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
935	chr17	45888373	45888374	rs62076103	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q21.32	OSBPL7	rs62076103-A	0.9344	5E-31		0.4132	[0.34-0.48] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
935	chr17	45930358	45930359	rs2074187	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	17q21.32	SP6	rs2074187-A	0.042	4E-8		1.66	[1.38-1.98] unit increase	Illumina [185478]	N
935	chr17	45930538	45930539	rs4794202	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q21.32	OSBPL7, SP6, MRPL10	rs4794202-?	0.08	8E-8		0.19	unit decrease	Illumina [NR] (imputed)	N
935	chr17	45938104	45938105	rs72833461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q21.32		rs72833461-G	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
935	chr17	45941793	45941794	rs56104550	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	RP11-6N17.1	rs56104550-T	NR	2E-9		0.020045	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
935	chr17	45948951	45948952	rs72833466	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	17q21.32	SP6	rs72833466-A	0.2769	2E-28		1.169	NR	Affymetrix [9154080] (imputed)	N
935	chr17	45948951	45948952	rs72833466	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	17q21.32	SP2, SP6	rs72833466-A	0.268	4E-90		0.06	[0.054-0.066] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
935	chr17	45950720	45950721	rs72833470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.32		rs72833470-?	NR	2E-177				NR [~ 8900000] (imputed)	N
935	chr17	45950720	45950721	rs72833470	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.32	SP6	rs72833470-G	0.2774	7E-57		1.143	NR	Affymetrix [9154080] (imputed)	N
935	chr17	45960448	45960449	rs72833479	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	17q21.32	SP2	rs72833479-A	0.25	8E-7		0.044	[0.026-0.062] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
935	chr17	45964441	45964442	rs113516984	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	17q21.32	RP11-6N17.4, SP2	rs113516984-T	NR	8E-7		1.5151515	[1.28-1.79]	Affymetrix [9737707] (imputed)	N
935	chr17	45964441	45964442	rs113516984	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	17q21.32	NR	rs113516984-T	0.893	5E-6	(Latino)	1.5151515	[1.27-1.79]	Affymetrix [9737707] (imputed)	N
935	chr17	45968293	45968294	rs12942207	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	17q21.32	SP6, SP2	rs12942207-C	0.3	3E-9		0.0238	[0.016-0.032] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
935	chr17	45991239	45991240	rs16949418	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.32	SP2	rs16949418-?	NR	9E-16		1.0787487	NR	Affymetrix [9154080] (imputed)	N
936	chr17	46012501	46012502	rs80347400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	AC003665.1	rs80347400-G	NR	4E-14		0.0299725	[0.022-0.038] unit decrease	Affymetrix [321016] (imputed)	N
936	chr17	46012501	46012502	rs80347400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs80347400-?	NR	6E-33				NR [~ 8900000] (imputed)	N
936	chr17	46012501	46012502	rs80347400	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.32	SP2-AS1	rs80347400-A	0.8573	6E-6		0.0445	[0.025-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
936	chr17	46013385	46013386	rs192123848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.32		rs192123848-?	NR	3E-15				NR [~ 8900000] (imputed)	N
936	chr17	46022064	46022065	rs17679445	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.32	NR	rs17679445-A	0.04704	4E-12	(PNPO)	0.08638	NR unit decrease	Illumina [1671387] (imputed)	N
936	chr17	46029088	46029089	rs11651753	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	17q21.32	PRR15L	rs11651753-T	0.41983	1E-9		0.08688845	[0.059-0.115] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
936	chr17	46029088	46029089	rs11651753	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17q21.32	MIR4315-2	rs11651753-T	0.22	3E-7	(BDRBASE, AA)	4.22	[2.62-5.82] unit increase	Illumina [NR] (imputed)	N
936	chr17	46030674	46030675	rs112940396	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UFC1	5,353 Icelandic ancestry individuals	NA	17q21.32		rs112940396-T	0.03014	4E-14		0.395236	[0.29-0.5] unit decrease	Illumina [7506463] (imputed)	N
936	chr17	46034090	46034091	rs2597169	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	17q21.32	PRR15L	rs2597169-G	0.348	3E-9		1.081		Illumina [715631] (imputed)	N
936	chr17	46034090	46034091	rs2597169	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	17q21.32	PRR15L	rs2597169-G	0.348	3E-9		1.081		Illumina [715631] (imputed)	N
936	chr17	46035000	46035001	rs11650304	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q21.32	NR	rs11650304-C	0.9308	1E-8		1.069	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
936	chr17	46044030	46044031	rs9894188	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.32	NR	rs9894188-?	NR	3E-6		0.0081557	[0.0047-0.0116] unit increase	Affymetrix [805426] (imputed)	N
936	chr17	46044445	46044446	rs113962925	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q21.32	CDK5RAP3	rs113962925-C	0.925586	9E-11		0.0171085	[0.012-0.022] unit decrease	Affymetrix [12370749]	N
936	chr17	46045494	46045495	rs4794333	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	17q21.32	PNPO	rs4794333-C	0.38	7E-9		5.8	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
936	chr17	46047655	46047656	rs2597167	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	17q21.32	CDK5RAP3	rs2597167-C		6E-6		0.14	[0.08-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
936	chr17	46051910	46051911	rs886444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q21.32		rs886444-?	NR	5E-16				NR [~ 8900000] (imputed)	N
936	chr17	46060958	46060959	rs111639853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.32		rs111639853-?	NR	2E-8				NR [~ 8900000] (imputed)	N
936	chr17	46077359	46077360	rs2525098	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs2525098-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
936	chr17	46077966	46077967	rs35653190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs35653190-T	0.221856	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
936	chr17	46077966	46077967	rs35653190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17q21.32		rs35653190-?	NR	4E-9				NR [~ 8900000] (imputed)	N
936	chr17	46080232	46080233	rs8071778	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	17q21.32	NR	rs8071778-G	0.84	2E-6		0.03	[0.018-0.042] unit increase	NR [9704453]	N
936	chr17	46080232	46080233	rs8071778	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	17q21.32	NR	rs8071778-G	0.84	3E-8		0.03	[0.02-0.04] unit increase	NR [9704453]	N
936	chr17	46080232	46080233	rs8071778	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q21.32	NA	rs8071778-C	0.1539	7E-11		0.016	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
936	chr17	46082956	46082957	rs6503964	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.32	RP11-6N17.10	rs6503964-T	0.5568	4E-6		0.0303	[0.017-0.043] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
936	chr17	46088196	46088197	rs8067216	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	17q21.32	intergenic	rs8067216-A	0.2879	9E-7		1.1165	NR	Affymetrix, Illumina [30341632] (imputed)	N
936	chr17	46090768	46090769	rs12935890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.32	NR	rs12935890-T	0.27405	8E-11		0.014068	[0.0098-0.0183] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
936	chr17	46093538	46093539	rs882163	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.32	NR	rs882163-?	NR	3E-7		5.097	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
936	chr17	46103236	46103237	rs11656818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q21.32	NR	rs11656818-A	NR	2E-9		0.0275	[0.018-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr17	46103236	46103237	rs11656818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q21.32	NR	rs11656818-A	NR	7E-10		0.0294	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
936	chr17	46103759	46103760	rs12051	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.32	COPZ2	rs12051-G	0.3881	5E-13		1.0267515		Affymetrix [11880941] (imputed)	N
936	chr17	46112175	46112176	rs59128042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q21.32	COPZ2	rs59128042-G	NR	4E-8		0.0369396	[0.024-0.05] unit increase	Affymetrix [323123] (imputed)	N
936	chr17	46114619	46114620	rs12940701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.32	COPZ2	rs12940701-T	0.288078	8E-10		0.014980291	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
936	chr17	46123003	46123004	rs72823592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	RP5-890E16.2	rs72823592-A	NR	2E-12		0.0226886	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
936	chr17	46123003	46123004	rs72823592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q21.32	RP5-890E16.2	rs72823592-A	NR	1E-8		0.0199815	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
936	chr17	46123003	46123004	rs72823592	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	17q21.32	SNX11, SKAP1, CDK5RAP3, PNPO, ATAD4, COPZ2, hsa-mir-152, NFE2L1, CBX1	rs72823592-G	0.753	9E-9	(All GGE)	1.3	[1.20-1.41]	Affymetrix [4560000] (imputed)	N
936	chr17	46123931	46123932	rs3764400	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	17q21.32	NFE2L1	rs3764400-T	0.8405	2E-6		0.0116	[0.0069-0.0163] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
936	chr17	46123931	46123932	rs3764400	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	17q21.32	CBX1	rs3764400-C	0.14	4E-7				Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
936	chr17	46124325	46124326	rs9900074	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q21.32	NR	rs9900074-G	0.9245	3E-10		0.055	[0.038-0.072] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
936	chr17	46126115	46126116	rs12602010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.32	NFE2L1	rs12602010-A	0.243883	8E-21		0.024121702	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr17	46126115	46126116	rs12602010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q21.32	NFE2L1	rs12602010-A	0.243908	5E-15		0.0202708	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr17	46126115	46126116	rs12602010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs12602010-A	0.227206	1E-17				Affymetrix, Illumina [24558453] (imputed)	N
936	chr17	46126115	46126116	rs12602010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.32		rs12602010-?	NR	7E-24				NR [~ 8900000] (imputed)	N
936	chr17	46129761	46129762	rs17680229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs17680229-A	0.145174	2E-18				Affymetrix, Illumina [24653286] (imputed)	N
936	chr17	46129761	46129762	rs17680229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q21.32	NR	rs17680229-A	0.151138	2E-20		0.024222	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
937	chr17	46141843	46141844	rs9909922	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.32	NFE2L1	rs9909922-T	0.89224	3E-14		0.0227585	[0.017-0.029] unit increase	NR [13737936] (imputed)	N
937	chr17	46141843	46141844	rs9909922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.32		rs9909922-?	NR	1E-15				NR [~ 8900000] (imputed)	N
937	chr17	46143041	46143042	rs7209484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q21.32		rs7209484-C	NR	7E-14		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
937	chr17	46143041	46143042	rs7209484	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q21.32	NFE2L1, CBX1	rs7209484-C	0.24	9E-10		6.12	z-score increase	Affymetrix [4314223] (imputed)	N
937	chr17	46156509	46156510	rs117974417	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q21.32		rs117974417-C	0.8477	2E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
937	chr17	46165234	46165234	rs531431865	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	17q21.32	CBX1	rs531431865-C	0.678686	3E-13		0.01854	[0.014-0.024] unit decrease	Affymetrix [19400838] (imputed)	N
937	chr17	46165234	46165234	rs531431865	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	17q21.32	CBX1	rs531431865-C	0.678648	9E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
937	chr17	46171098	46171099	rs2109984	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.32		rs2109984-?	NR	1E-10		0.0164339	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
937	chr17	46178673	46178674	rs3744347	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q21.32	NR	rs3744347-G	0.253	5E-11		0.0301	[0.021-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
937	chr17	46180723	46180724	rs4794447	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs4794447-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
937	chr17	46188182	46188183	rs118127175	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.32	SNX11	rs118127175-T	0.0372	2E-17		0.0426	[0.033-0.052] unit decrease	Affymetrix [18391927] (imputed)	N
937	chr17	46192972	46192972	rs140089442	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.32		rs140089442-?	NR	4E-15		0.0256238	[0.019-0.032] unit increase	Affymetrix [20259828] (imputed)	N
937	chr17	46197754	46197755	rs10775406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q21.32		rs10775406-G	NR	3E-14		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
937	chr17	46197754	46197755	rs10775406	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.32	SNX11	rs10775406-A	0.240307	2E-18		0.0204601	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
937	chr17	46197754	46197755	rs10775406	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q21.32	SNX11	rs10775406-?	NR	3E-8		0.0171	[0.012-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
937	chr17	46208792	46208793	rs12601412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q21.32	SKAP1	rs12601412-T	0.248321	1E-12		0.018119875	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
937	chr17	46208792	46208793	rs12601412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs12601412-T	0.239827	3E-17				Affymetrix, Illumina [24649327] (imputed)	N
937	chr17	46208792	46208793	rs12601412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q21.32	NR	rs12601412-T	0.245383	3E-15		0.016981	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
937	chr17	46227845	46227846	rs11079810	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	17q21.32	SKAP1	rs11079810-?	NR	4E-10				NR [1800000]	N
937	chr17	46230890	46230891	rs16969990	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.32	SKAP1	rs16969990-C	0.929705	3E-11		0.0248864	[0.018-0.032] unit decrease	Affymetrix [NR] (imputed)	N
937	chr17	46230890	46230891	rs16969990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.32		rs16969990-?	NR	1E-11				NR [~ 8900000] (imputed)	N
937	chr17	46238007	46238008	rs78428146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs78428146-?	NR	3E-12				NR [~ 8900000] (imputed)	N
937	chr17	46252345	46252346	rs208015	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q21.32	NA	rs208015-T	0.07	7E-26		0.0352	[0.029-0.042] unit increase	NR [~ 27400000] (imputed)	N
937	chr17	46262170	46262171	rs2278868	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	17q21.32	NR	rs2278868-T	NR	5E-7		1.1494253	[1.09-1.21]	Illumina [462430]	N
938	chr17	46269542	46269542	rs11409890	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	17q21.32	NR	rs11409890-T	NR	2E-7		0.007064	[0.0044-0.0098] unit increase	NR [11010159] (imputed)	N
938	chr17	46269542	46269542	rs11409890	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17q21.32	NR	rs11409890-T	NR	2E-10		0.00666388	[0.0046-0.0087] unit increase	NR [11010159] (imputed)	N
938	chr17	46269542	46269542	rs11409890	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17q21.32	NR	rs11409890-T	NR	1E-9	(adjusted for BMI)	0.006317	[0.0043-0.0084] unit increase	NR [11010159] (imputed)	N
938	chr17	46270605	46270606	rs113866544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.32		rs113866544-C	NR	7E-20		0.0249	[0.02-0.03] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
938	chr17	46270605	46270606	rs113866544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs113866544-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
938	chr17	46270605	46270606	rs113866544	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q21.32	NR	rs113866544-C	0.06736	1E-13		0.036627542	[0.027-0.046] unit increase	Affymetrix [10549349] (imputed)	N
938	chr17	46270605	46270606	rs113866544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.32		rs113866544-?	NR	1E-20				NR [~ 8900000] (imputed)	N
938	chr17	46271417	46271418	rs760277308	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	17q21.32	SKAP1, RP11-456D7.1	rs760277308-T	0.999	6E-6		1.7077	[0.97-2.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
938	chr17	46272608	46272609	rs11650182	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs11650182-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
938	chr17	46273928	46273929	rs9903692	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.32	HOXB7	rs9903692-A	0.20348838	1E-7		0.1989	[0.12-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
938	chr17	46290374	46290375	rs2325885	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	SKAP1	rs2325885-T	0.2368	7E-18		0.1969	[0.15-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
938	chr17	46292922	46292923	rs6504108	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q21.32	NR	rs6504108-C	NR	1E-8		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
938	chr17	46292922	46292923	rs6504108	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q21.32	SKAP1	rs6504108-T	0.7	2E-11		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
938	chr17	46292922	46292923	rs6504108	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q21.32	TBX21, SP6, OSBPL7, MRPL10, LRRC46, PNPO, SP2, PRR15L, CDK5RAP3, MIR152, COPZ2, CBX1, SNX11, MIR1203, HOXB1, HOXB2, HOXB3, HOXB4	rs6504108-T	0.71537264268123	3E-9		0.017592397	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
938	chr17	46292922	46292923	rs6504108	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q21.32	SKAP1	rs6504108-C	0.285	9E-6	(EA, women)	0.019	[0.011-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
938	chr17	46292922	46292923	rs6504108	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q21.32	SKAP1	rs6504108-C	0.284	4E-7	(EA)	0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
938	chr17	46292922	46292923	rs6504108	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q21.32	SKAP1	rs6504108-C	0.284	1E-7		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
938	chr17	46294235	46294236	rs882380	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	17q21.32	SKAP1	rs882380-A	0.612652	1E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
938	chr17	46294235	46294236	rs882380	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	17q21.32	SKAP1	rs882380-A	0.61	5E-9		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
938	chr17	46297514	46297515	rs79169085	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q21.32	NR	rs79169085-C	NR	4E-6		1.2195122	[NR]	Illumina [7158791] (imputed)	N
938	chr17	46306126	46306127	rs16954078	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	17q21.32	SKAP1	rs16954078-A	0.2109	3E-8		5.551	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
938	chr17	46306126	46306127	rs16954078	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	17q21.32	SKAP1	rs16954078-A	0.2109	1E-6	(Adults)	4.828	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
938	chr17	46335578	46335579	rs2957933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.32		rs2957933-?	NR	2E-17				NR [~ 8900000] (imputed)	N
938	chr17	46338676	46338677	rs2924251	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.32	NR	rs2924251-A	0.3325	5E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
938	chr17	46339526	46339527	rs8080031	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q21.32	NR	rs8080031-?	NR	2E-41				Affymetrix [NR]	N
938	chr17	46357119	46357120	rs2084881	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	17q21.32	NR	rs2084881-?	NR	2E-6		1.12	[1.07-1.18]	Illumina [2056878] (imputed)	N
938	chr17	46365817	46365818	rs9913760	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.32	NR	rs9913760-?	NR	7E-6		4.505	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
939	chr17	46408186	46408186	rs576009056	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q21.32	NR	rs576009056-G	0.765418	1E-10		0.0227521	[0.016-0.03] unit increase	Affymetrix [16577313] (imputed)	N
939	chr17	46411499	46411500	rs9303542	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	17q21.32	SKAP1	rs9303542-G	0.27	5E-15		1.14	[1.10-1.19]	Illumina [up to 10962898] (imputed)	N
939	chr17	46411499	46411500	rs9303542	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	17q21.32	NR	rs9303542-?	0.27	6E-9	(All invasive)	1.12	[1.08-1.16]	Illumina [2508744] (imputed)	N
939	chr17	46411499	46411500	rs9303542	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	17q21.32	NR	rs9303542-?	0.27	3E-10	(Serious invasive)	1.14	[1.09-1.18]	Illumina [2508744] (imputed)	N
939	chr17	46411499	46411500	rs9303542	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	17q21.32	SKAP1	rs9303542-G	NR	1E-6		1.11	[1.06-1.16]	Illumina [2056878] (imputed)	N
939	chr17	46420447	46420448	rs184938669	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	17q21.32	NR	rs184938669-G	NR	4E-6		1.6162	[0.93-2.31] SD units decrease	NR [10700000] (imputed)	N
939	chr17	46420995	46420996	rs72827839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs72827839-A	0.208044	6E-18				Affymetrix, Illumina [24588908] (imputed)	N
939	chr17	46420995	46420996	rs72827839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q21.32	NR	rs72827839-A	0.218974	1E-18		0.019502	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
939	chr17	46420995	46420996	rs72827839	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Ease of getting up in the morning	112,866 European ancestry individuals	NA	17q21.32	NR	rs72827839-A	0.22	9E-10		0.03	[0.02-0.04] unit increase	Affymetrix [at least 12428592] (imputed)	N
939	chr17	46424895	46424896	rs1509637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q21.32		rs1509637-?	NR	2E-12				NR [~ 8900000] (imputed)	N
939	chr17	46434992	46434993	rs9906651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.32	NR	rs9906651-A	0.260699	2E-26				Affymetrix, Illumina [24332387] (imputed)	N
939	chr17	46446541	46446542	rs200314279	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	17q21.32	SKAP1	rs200314279-?	NR	6E-7	(excluding GERA cohort)			Illumina [7830195] (imputed)	N
939	chr17	46460524	46460525	rs72827854	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	17q21.32	SKAP1	rs72827854-?		3E-6				Illumina [7830195] (imputed)	N
939	chr17	46463908	46463909	rs77556405	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17q21.32	NR	rs77556405-A	0.1727	2E-13		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
939	chr17	46481406	46481407	rs12948086	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	17q21.32	HOXB1, HOXB2, HOXB3, SKAP1	rs12948086-T	NR	5E-9		0.165	[0.11-0.22] unit increase	Affymetrix [7701190] (imputed)	N
939	chr17	46492259	46492260	rs140756892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.32		rs140756892-?	NR	4E-11				NR [~ 8900000] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	1E-14		1.13894	[1.10200256244972-1.17711551141243]	Illumina [11595112] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	8E-6		1.1832383	[1.09949355363646-1.27336159916358]	Illumina [11595112] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	1E-7		1.1787505	[1.10925120766678-1.25260426998392]	Illumina [11595112] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	8E-13		1.1105318	[1.07914609971847-1.14283031731538]	Illumina [11595112] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	8E-14		1.1383171	[1.1003320875334-1.17761354130912]	Illumina [11595112] (imputed)	N
939	chr17	46500672	46500673	rs7207826	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	17q21.32	NR	rs7207826-C	0.267801	2E-17		1.1311107	[1.09941695678777-1.16371793958399]	Illumina [11595112] (imputed)	N
939	chr17	46508155	46508156	rs62065796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs62065796-A	NR	1E-10		0.0437	[0.031-0.057] unit increase	Affymetrix [9000000] (imputed)	N
939	chr17	46508155	46508156	rs62065796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs62065796-A	NR	8E-17		0.0563	[0.043-0.069] unit increase	Affymetrix [9000000] (imputed)	N
939	chr17	46512687	46512688	rs7211636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.32		rs7211636-T	NR	4E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
939	chr17	46515783	46515784	rs72827873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.32		rs72827873-?	NR	9E-16				NR [~ 8900000] (imputed)	N
939	chr17	46517796	46517797	rs79275904	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.32	NR	rs79275904-C	0.9118	6E-9		1.0526316	[1.04-1.07]	Affymetrix, Illumina [10862568] (imputed)	N
940	chr17	46544203	46544203	rs528568705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.32	RP11-433M22.2	rs528568705-CA	0.220933	9E-13		0.019897996	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr17	46544203	46544203	rs528568705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q21.32	RP11-433M22.2	rs528568705-CA	0.220937	1E-15		0.022279	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr17	46547463	46547464	rs11657639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.32	RP11-433M22.2	rs11657639-G	0.3861	3E-11		0.02431814	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
940	chr17	46552228	46552229	rs12945803	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q21.32	LOC101927166	rs12945803-T	0.7822	4E-7		0.0155	[0.0094-0.0216] unit decrease	Affymetrix [19819130] (imputed)	N
940	chr17	46552228	46552229	rs12945803	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.32	LOC101927166	rs12945803-T	0.7822	2E-12		0.02	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
940	chr17	46552228	46552229	rs12945803	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.32	LOC101927166	rs12945803-T	0.7822	6E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
940	chr17	46562454	46562455	rs35755011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.32	NR	rs35755011-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
940	chr17	46563706	46563707	rs1553754	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q21.32	NR	rs1553754-G	0.4379	4E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
940	chr17	46584015	46584016	rs8071207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q21.32		rs8071207-?	NR	3E-10				NR [~ 8900000] (imputed)	N
940	chr17	46584656	46584657	rs2202895	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.32	NR	rs2202895-T	0.2272	1E-8	(Rostral Anterior Cingulate)	4.1423416	[2.72-5.57] unit decrease	Affymetrix, Illumina [NR]	N
940	chr17	46593124	46593125	rs62065847	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q21.32	HOXB1	rs62065847-T	0.5126	8E-6		0.0299	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
940	chr17	46593124	46593125	rs62065847	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q21.32	HOXB1	rs62065847-T	0.5126	8E-6		0.0299	[0.017-0.043] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
940	chr17	46602407	46602408	rs192103218	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17q21.32	NR	rs192103218-?	NR	1E-6		0.3143	[0.19-0.44] unit increase	Illumina [at least 560000] (imputed)	N
940	chr17	46608202	46608202	rs145570960	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.32	HOXB1	rs145570960-GGGGCGCTGTGGGCGCTGT		3E-16		0.022	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
940	chr17	46614249	46614250	rs76525880	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	17q21.32	HOXB1	rs76525880-A	0.929	7E-6	(opposite direction)	1.16	[1.09-1.24]	Illumina [up to 6000000] (imputed)	N
940	chr17	46617018	46617019	rs6504340	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q21.32	HOXB1, HOXB2	rs6504340-G	0.22	6E-7				Illumina [300766]	N
940	chr17	46618982	46618983	rs76892999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q21.32	NR	rs76892999-A	NR	2E-10		0.0245	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr17	46635648	46635649	rs9905793	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	17q21.32	HOXB-AS2	rs9905793-A	0.091	7E-9		0.027	[0.018-0.036] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
940	chr17	46635648	46635649	rs9905793	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	17q21.32	HOXB-AS2	rs9905793-A	0.091	4E-8		0.054	[0.035-0.073] unit increase	Affymetrix [at least 8900000] (imputed)	N
940	chr17	46639702	46639703	rs733920	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q21.32	NR	rs733920-C	0.845	3E-9		0.00886945	[0.006-0.0118] unit decrease	NR [9732723] (imputed)	N
940	chr17	46644676	46644677	rs9906289	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	17q21.32	HOXB	rs9906289-T	0.046	6E-11		0.083	[0.058-0.108] unit increase	Illumina [7428049] (imputed)	N
940	chr17	46661076	46661077	rs7406170	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	17q21.32	MIR10A	rs7406170-?		2E-8				Affymetrix, Illumina [2374420] (imputed)	N
940	chr17	46661291	46661292	rs2288278	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	17q21.32	HOXB3	rs2288278-A	0.658	4E-12		0.1574	[0.11-0.2] kg increase	Affymetrix [at least 17000000] (imputed)	N
941	chr17	46666482	46666483	rs117470167	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	17q21.32	HOXB3	rs117470167-?	NR	2E-9		0.09233599	NR unit increase	Affymetrix [464137]	N
941	chr17	46669429	46669430	rs9299	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q21.32	HOXB3	rs9299-C	0.343455	8E-11		0.00958609	[0.0067-0.0125] unit decrease	Affymetrix [12370749]	N
941	chr17	46669429	46669430	rs9299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.32		rs9299-?	NR	7E-9				NR [~ 8900000] (imputed)	N
941	chr17	46669429	46669430	rs9299	22484627	Bradfield JP	2012-04-08	Nat Genet	A genome-wide association meta-analysis identifies new childhood  obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	17q21.32	HOXB5	rs9299-?	NR	4E-9		1.144	[1.094-1.196]	Affymetrix, Illumina [2700000] (imputed)	N
941	chr17	46670421	46670422	rs2288276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.32		rs2288276-?	NR	3E-9				NR [~ 8900000] (imputed)	N
941	chr17	46676459	46676460	rs10853101	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q21.32	NR	rs10853101-G	NR	3E-9				Affymetrix, Illumina [NR] (imputed)	N
941	chr17	46676459	46676460	rs10853101	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.32	HOXB5	rs10853101-A	0.72275180240647	7E-6		0.0026982	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
941	chr17	46682629	46682630	rs11079830	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	17q21.32	HOXB6	rs11079830-A	0.58	2E-6		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
941	chr17	46683799	46683800	rs12952262	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	17q21.32		rs12952262-T	0.16	2E-7		0.0591	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
941	chr17	46683799	46683800	rs12952262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.32	HOXB3, HOXB6	rs12952262-T	0.164768	2E-14		0.022830497	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
941	chr17	46686839	46686840	rs890431	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip)	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q21.32	NR	rs890431-T	NR	2E-8		0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
941	chr17	46686839	46686840	rs890431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q21.32	NR	rs890431-T	0.1258	2E-9	(East Asian)	0.5746	[0.39-0.76] unit decrease	Illumina [6200000] (imputed)	N
941	chr17	46686839	46686840	rs890431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q21.32	NR	rs890431-T	0.1258	2E-10	(East Asian)	0.4249	[0.29-0.56] unit decrease	Illumina [6200000] (imputed)	N
941	chr17	46686839	46686840	rs890431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q21.32	NR	rs890431-T	0.1259	2E-8	(East Asian)	0.3367	[0.22-0.45] unit decrease	Illumina [6200000] (imputed)	N
941	chr17	46688255	46688256	rs7406910	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q21.32	HOXB7	rs7406910-T	0.13	4E-7	(Japanese)	0.5743	[0.35-0.8] unit decrease	Illumina [6200000] (imputed)	N
941	chr17	46688255	46688256	rs7406910	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q21.32	HOXB7	rs7406910-T	0.1258	5E-7	(Japanese)	0.4029	[0.25-0.56] unit decrease	Illumina [6200000] (imputed)	N
941	chr17	46688255	46688256	rs7406910	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.32	HOXB7	rs7406910-T	0.1136	7E-10		0.447	mmHg decrease	Illumina [242296]	N
941	chr17	46688255	46688256	rs7406910	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.32	HOXB7	rs7406910-T	0.1136	1E-7		0.2705	[0.17-0.37] mmHg decrease	Illumina [242296]	N
941	chr17	46688255	46688256	rs7406910	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.32	HOXB7	rs7406910-T	0.1026	1E-6		4.814	z score decrease	Illumina [242296]	N
941	chr17	46689679	46689680	rs55711449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	17q21.32		rs55711449-A	0.212075	4E-10		0.0241322	[0.017-0.032] unit increase	Illumina [13479135] (imputed)	N
941	chr17	46708649	46708650	rs62064572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs62064572-A	NR	3E-10		0.0246	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
941	chr17	46708649	46708650	rs62064572	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q21.32	NR	rs62064572-A	NR	4E-11		0.026	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
941	chr17	46720564	46720565	rs2326017	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	17q21.32	intergenic	rs2326017-T	0.28	2E-6	(Children)			Illumina [up to 527642]	N
941	chr17	46720564	46720565	rs2326017	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	17q21.32	AC103702.3	rs2326017-?	0.2985	3E-7	(SWM strategy)			Illumina [475971]	N
941	chr17	46731504	46731514	rs759782824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q21.32		rs759782824-A	NR	1E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
941	chr17	46738882	46738883	rs9890514	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA	17q21.32	intergenic	rs9890514-?	NR	4E-6	(AA)	0.012391	[0.0071-0.0176] unit increase	Illumina [at least 620901]	N
941	chr17	46749790	46749791	rs8074700	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	17q21.32	intergenic	rs8074700-A	0.26	1E-6	(Children)			Illumina [up to 527642]	N
941	chr17	46753542	46753543	rs3110609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q21.32	HOXB7	rs3110609-T	0.657833	3E-12		0.0153785	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
941	chr17	46757574	46757575	rs3096644	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q21.32	PRAC1	rs3096644-G	0.67942	1E-13		0.0165372	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
941	chr17	46757574	46757575	rs3096644	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q21.32	RN7SL125P	rs3096644-?	NR	3E-13		0.0201	[0.015-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
941	chr17	46757574	46757575	rs3096644	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	17q21.32	LOC729146	rs3096644-G		6E-6		0.08	[0.04-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
941	chr17	46772712	46772713	rs55804472	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	17q21.32	CTD-2377D24.8	rs55804472-C	0.910930429	5E-6		0.225197	[0.13-0.32] unit decrease	Illumina [6969139] (imputed)	N
941	chr17	46772775	46772776	rs12450895	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	17q21.32	NR	rs12450895-A	0.21	1E-12		1.09	[1.07-1.11]	Affymetrix, Illumina [15838848] (imputed)	N
941	chr17	46772775	46772776	rs12450895	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	17q21.32	HOXBcluster, PRAC1	rs12450895-A	0.21	4E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [6864281] (imputed)	N
941	chr17	46780496	46780497	rs4793976	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	17q21.32	LINC02086	rs4793976-G	0.33	1E-8		1.26	[1.17-1.37] unit increase	Illumina [185478]	N
941	chr17	46781634	46781635	rs28613067	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.32	LINC02086	rs28613067-A	0.2768	1E-26		0.0227	[0.019-0.027] unit increase	Affymetrix [18391927] (imputed)	N
941	chr17	46781848	46781849	rs111937789	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	17q21.32	Intergenic	rs111937789-G	NR	2E-6		1.4852	[0.87-2.1] unit decrease	Illumina [13520550] (imputed)	N
941	chr17	46786753	46786754	rs79278236	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q21.32	NR	rs79278236-C	0.131229	6E-9		0.0557423	[0.036-0.075] unit increase	Affymetrix [17914406] (imputed)	N
941	chr17	46788432	46788433	rs1879110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q21.32		rs1879110-A	NR	3E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
941	chr17	46788672	46788673	rs78873483	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	17q21.32	NR	rs78873483-G		5E-6		0.1287	[0.073-0.184] SD units decrease	NR [10700000] (imputed)	N
941	chr17	46789956	46789957	rs73985893	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.32	NR	rs73985893-G	0.129539	2E-8		0.0256288	[0.017-0.035] unit decrease	NR [19129689] (imputed)	N
942	chr17	46799474	46799475	rs78731865	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	17q21.32	NR	rs78731865-G		5E-6		0.1244	[0.071-0.178] SD units increase	NR [10700000] (imputed)	N
942	chr17	46799474	46799475	rs78731865	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	17q21.32	NR	rs78731865-G		2E-6		0.1339	[0.079-0.189] SD units increase	NR [10700000] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of father: Prostate cancer (UKB data field 20107_13)	30,487 European ancestry cases, 363,771 European ancestry controls	NA	17q21.32		rs138213197-T	0.001682	3E-9		0.64	[0.43-0.85] unit increase	NR [11842647] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	ICD10 C61: Malignant neoplasm of prostate	7,769 European ancestry cases, 201,039 European ancestry controls	NA	17q21.32		rs138213197-T	0.001589	2E-29		2.76	[2.28-3.24] unit increase	NR [11842647] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer of prostate (PheCode 185)	5,796 European ancestry cases, 203,012 European ancestry controls	NA	17q21.32		rs138213197-T	0.001648	3E-19		2.5	[1.95-3.05] unit increase	NR [11842647] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer code, self-reported: prostate cancer (UKB data field 20001_1044)	3,221 European ancestry cases, 205,547 European ancestry controls	NA	17q21.32		rs138213197-T	0.001661	6E-23		4.0	[3.21-4.79] unit increase	NR [11842647] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q21.32		rs138213197-T	NR	4E-76		2.6106	[2.33-2.89] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
942	chr17	46805704	46805705	rs138213197	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17q21.32		rs138213197-?	NR	6E-40		5.0116	[4.77-5.25]	NR [680312]	N
942	chr17	46805704	46805705	rs138213197	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	17q21.32		rs138213197-?	NR	9E-8		1.48936	[1.34-1.64]	NR [688737]	N
942	chr17	46805704	46805705	rs138213197	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17q21.32	NR	rs138213197-T	0.001743436	2E-36		4.484751	[3.55-5.66]	Affymetrix, Illumina [20400945] (imputed)	N
942	chr17	46805704	46805705	rs138213197	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q21.32	NR	rs138213197-T	NR	1E-62		3.976	[3.38-4.68]	Affymetrix, Illumina [29235255] (imputed)	N
942	chr17	46805704	46805705	rs138213197	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	17q21.32	NR	rs138213197-T	NR	3E-43		4.46	NR	Affymetrix [at least 232408] (imputed)	N
942	chr17	46805704	46805705	rs138213197	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q21.32	NR	rs138213197-T	0.002	9E-63		3.85	[3.29-4.51]	Illumina [20370935] (imputed)	N
942	chr17	46815946	46815947	rs4363897	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q21.32	HOXB13	rs4363897-C	0.0444460281674084	4E-7	(C_Deltaproteobacteria_HB)	0.71338	[0.44-0.99] unit decrease	Illumina [7711310] (imputed)	N
942	chr17	46819032	46819033	rs144467962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs144467962-?	NR	5E-11				NR [~ 8900000] (imputed)	N
942	chr17	46819032	46819033	rs144467962	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	17q21.32	NR	rs144467962-G		8E-6		0.2603	[0.14-0.38] SD units decrease	NR [10700000] (imputed)	N
942	chr17	46824673	46824674	rs79917357	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q21.32	intergenic	rs79917357-A	0.168	5E-9		0.342	[0.23-0.46] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
942	chr17	46824673	46824674	rs79917357	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q21.32	intergenic	rs79917357-A	0.168	4E-7	(EA, initial)	0.52	[0.32-0.72] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
942	chr17	46826135	46826136	rs17706790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.32		rs17706790-?	NR	4E-11				NR [~ 8900000] (imputed)	N
942	chr17	46840540	46840541	rs7219021	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	17q21.32	NR	rs7219021-?		1E-7	(SCZ vs. BP)			Affymetrix, Illumina [~ 1100000] (imputed)	N
942	chr17	46844563	46844564	rs72831855	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	TTLL6	rs72831855-T	0.0535	2E-17		0.4092	[0.32-0.5] mmHg increase	Affymetrix [NR] (imputed)	N
942	chr17	46847363	46847364	rs2032844	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	17q21.32	TTLL6- CALCOCO2	rs2032844-C	0.754	1E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
942	chr17	46874271	46874272	rs585736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.32	NR	rs585736-A	NR	1E-9		0.0424	[0.029-0.056] unit increase	Affymetrix [9000000] (imputed)	N
942	chr17	46874271	46874272	rs585736	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q21.32	HOXB7	rs585736-A	0.03	3E-11		0.609	[0.43-0.79] unit increase	Affymetrix [~ 9800000] (imputed)	N
942	chr17	46896641	46896642	rs534840	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs534840-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
942	chr17	46913862	46913863	rs78270829	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.32	CALCOCO2	rs78270829-T	0.982	2E-10		0.0465	[0.032-0.061] unit decrease	Affymetrix [18391927] (imputed)	N
942	chr17	46918203	46918204	rs612720	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.32	CALCOCO2	rs612720-A	0.5287	2E-8		0.00946707	[0.0061-0.0128] unit increase	Affymetrix [11880941] (imputed)	N
943	chr17	46926614	46926615	rs550510	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CALCOCO2	5,363 Icelandic ancestry individuals	NA	17q21.32		rs550510-A	0.1568	2E-13		0.182516	[0.13-0.23] unit decrease	Illumina [7506463] (imputed)	N
943	chr17	46926614	46926615	rs550510	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.32	CALCOCO2	rs550510-G	0.853354	2E-14		0.00242779	[0.0018-0.0031] unit decrease	Affymetrix [13995440] (imputed)	N
943	chr17	46926614	46926615	rs550510	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q21.32	CALCOCO2	rs550510-A	0.15	3E-11		6.64	z-score increase	Affymetrix [4311822] (imputed)	N
943	chr17	46926614	46926615	rs550510	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.32	CALCOCO2	rs550510-G	0.84265625	1E-8	(CALCOCO2, 12534_10_3)	0.19003734	[0.13-0.25] unit increase	Illumina [> 1000000] (imputed)	N
943	chr17	46939657	46939658	rs10278	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	17q21.32	CALCOCO2	rs10278-C	0.706	3E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
943	chr17	46939657	46939658	rs10278	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	17q21.32	CALCOCO2	rs10278-C	0.706	3E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [247470]	N
943	chr17	46957986	46957987	rs595767	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.32	ATP5G1	rs595767-A	0.480931	1E-11		0.013567	[0.0097-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
943	chr17	46957986	46957987	rs595767	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.32	ATP5G1	rs595767-A	0.480807	5E-14		0.0143912	[0.011-0.018] unit increase	Affymetrix [NR] (imputed)	N
943	chr17	46959524	46959525	rs2546494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q21.32		rs2546494-A	NR	2E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
943	chr17	46967123	46967124	rs12948439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.32		rs12948439-?	NR	4E-74				NR [~ 8900000] (imputed)	N
943	chr17	46968007	46968008	rs1008834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q21.32		rs1008834-C	NR	1E-55		0.021	[0.018-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
943	chr17	46974733	46974734	rs318095	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q21.32	NR	rs318095-?	NR	9E-8		0.03415048	[0.022-0.047] unit decrease	Illumina [34656550] (imputed)	N
943	chr17	46974733	46974734	rs318095	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q21.32	ATP5G1	rs318095-T	0.463	2E-16		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
943	chr17	46979221	46979223	rs370569753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.32	SUMO2P17	rs370569753-C	0.479641	2E-10		0.0144083705	[0.01-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
943	chr17	46988596	46988597	rs46522	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	17q21.32	SNF8, GIP, UBE2Z, ATP5G1	rs46522-T	0.53	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
943	chr17	46989153	46989154	rs9894220	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q21.32	UBE2Z	rs9894220-G	0.433739992660085	2E-13		0.0585	[0.043-0.074] unit decrease	NR [5035015] (imputed)	N
943	chr17	46993978	46993978	rs398070924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.32	UBE2Z	rs398070924-TTTTTG	0.469031	3E-15		0.018040312	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
943	chr17	46993978	46993978	rs398070924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q21.32	UBE2Z	rs398070924-TTTTTG	0.46902	7E-11		0.014817554	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
943	chr17	46994969	46994970	rs12453394	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		17q21.32	CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP	rs12453394-A	NR	3E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [1918233] (imputed)	N
943	chr17	47000250	47000251	rs1058018	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.32		rs1058018-T	0.5678	9E-10	(conditional-joint)	0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
943	chr17	47000250	47000251	rs1058018	27362418	Zhang H	2016-06-30	PLoS Genet	A Powerful Procedure for Pathway-Based Meta-analysis Using Summary Statistics Identifies 43 Pathways Associated with Type II Diabetes in European Populations.	Type 2 diabetes	19,809 European ancestry cases, 111,181 European ancestry controls	6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls	17q21.32		rs1058018-T	0.57	3E-8	(EA)	1.09	[1.05-1.11]	NR [up to 2500000] (imputed)	N
943	chr17	47000993	47000993	rs145067756	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	UBE2Z	rs145067756-A	NR	4E-11		0.018805	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
943	chr17	47004722	47004723	rs2088138	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.32	NR	rs2088138-A	0.138911	2E-10		0.017725	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
943	chr17	47005587	47005588	rs1057902	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.32	UBE2Z	rs1057902-?	NR	1E-14		0.024805188	[0.018-0.031] unit decrease	Illumina [27896057] (imputed)	N
943	chr17	47016816	47016817	rs9747951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	SNF8	rs9747951-C	NR	2E-8		0.0162532	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
943	chr17	47026988	47026990	rs139445805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q21.32		rs139445805-T	NR	1E-12		0.0161	[0.012-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
943	chr17	47027117	47027118	rs8082345	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.32	NR	rs8082345-?	NR	5E-6	(female)	0.1458	[0.083-0.209] unit decrease	Affymetrix [7794483] (imputed)	N
943	chr17	47027117	47027118	rs8082345	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q21.32	NR	rs8082345-?	NR	3E-9		0.17449	[0.12-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
943	chr17	47028471	47028472	rs12325727	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	17q21.32	GIP	rs12325727-A	0.4624	3E-8		0.012496208	[0.0081-0.0169] unit increase	Affymetrix [11514463] (imputed)	N
943	chr17	47028471	47028472	rs12325727	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.32		rs12325727-A	0.4756	4E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
943	chr17	47029903	47029904	rs4794003	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.32	RNU1-42P	rs4794003-T	0.4679	6E-10		0.012509748	[0.0085-0.0165] unit decrease	Affymetrix [up to 18485882] (imputed)	N
943	chr17	47031972	47031973	rs9904288	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	17q21.32		rs9904288-T	0.708	3E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
943	chr17	47037023	47037024	rs11079847	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	17q21.32	GIP	rs11079847-?		3E-9				Illumina [5041948] (imputed)	N
943	chr17	47037157	47037158	rs146301099	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.32	GIP	rs146301099-T	NR	2E-8		0.01146	[0.0075-0.0154] unit decrease	Affymetrix [18485882] (imputed)	N
943	chr17	47037597	47037598	rs111970447	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	17q21.32	GIP	rs111970447-G	0.28115401	2E-7		0.286709	[0.18-0.4] unit decrease	Affymetrix [9463307] (imputed)	N
943	chr17	47037597	47037598	rs111970447	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	17q21.32	GIP	rs111970447-G	0.28115401	7E-6		0.00386984	[0.0022-0.0056] unit decrease	Affymetrix [9463307] (imputed)	N
943	chr17	47037770	47037771	rs7214663	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.32	GIP	rs7214663-A	0.568	6E-9		0.053	[0.035-0.071] unit decrease	Affymetrix [7947838] (imputed)	N
943	chr17	47038470	47038471	rs4794004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q21.32	GIP	rs4794004-G	NR	1E-8		0.0177634	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
943	chr17	47038470	47038471	rs4794004	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.32	GIP	rs4794004-A	0.554896	4E-17		0.00186398	[0.0014-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
943	chr17	47041246	47041247	rs4794005	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.32	GIP	rs4794005-A	0.4444	9E-15		0.0151	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
943	chr17	47042750	47042751	rs8079149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q21.32	GIP	rs8079149-G	NR	3E-10		0.019454	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
943	chr17	47044462	47044463	rs62078384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.32	Intergenic	rs62078384-T	0.5224	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
943	chr17	47045321	47045322	rs9901810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.32		rs9901810-?	NR	1E-8				NR [~ 8900000] (imputed)	N
943	chr17	47047595	47047596	rs3809770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.32	GIP	rs3809770-G	0.406362	7E-9		0.013039481	[0.0086-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
943	chr17	47047595	47047596	rs3809770	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.32	NR	rs3809770-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
943	chr17	47047867	47047868	rs3895874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.32		rs3895874-?	NR	7E-11				NR [~ 8900000] (imputed)	N
943	chr17	47047867	47047868	rs3895874	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q21.32	GIP	rs3895874-A	0.5552	1E-9		0.0414	[0.028-0.055] unit increase	NR [8041861] (imputed)	N
943	chr17	47048960	47048961	rs4794008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs4794008-T	NR	2E-14		0.0213	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
943	chr17	47048960	47048961	rs4794008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q21.32	NR	rs4794008-T	NR	1E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
944	chr17	47060321	47060322	rs35895680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q21.32		rs35895680-A	NR	2E-11		0.0584	[0.041-0.075] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
944	chr17	47060321	47060322	rs35895680	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q21.32	NR	rs35895680-A	0.3287	4E-16				NR [9056863] (imputed)	N
944	chr17	47060321	47060322	rs35895680	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q21.32	NR	rs35895680-C	0.6858	1E-28		0.0559	[0.046-0.066] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
944	chr17	47060321	47060322	rs35895680	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q21.32	NR	rs35895680-C	0.7066	8E-27		0.0499	[0.041-0.059] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
944	chr17	47060321	47060322	rs35895680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	17q21.32		rs35895680-?	NR	7E-8				NR [~ 8900000] (imputed)	N
944	chr17	47060321	47060322	rs35895680	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.32	GIP	rs35895680-A	0.3015	5E-14		0.2251	[0.17-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
944	chr17	47060321	47060322	rs35895680	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q21.32	TTLL6	rs35895680-C	0.678	3E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
944	chr17	47060321	47060322	rs35895680	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	17q21.32	UBE2Z	rs35895680-C	0.72	8E-6		1.06	[1.03-1.08]	Affymetrix, Illumina [8600000] (imputed)	N
944	chr17	47067825	47067826	rs4794015	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	17q21.32	RP11-501C14.5, IGF2BP1	rs4794015-A	0.41	4E-10		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
944	chr17	47068528	47068529	rs61162958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs61162958-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
944	chr17	47068985	47068986	rs11652684	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q21.32	NR	rs11652684-T	0.801704	4E-9		0.0145336	[0.0097-0.0194] unit increase	NR [NR]	N
944	chr17	47079415	47079416	rs9909861	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	17q21.32	IGF2BP1	rs9909861-A	0.35270801	2E-7		0.169891	[0.11-0.23] unit decrease	Affymetrix [9463307] (imputed)	N
944	chr17	47080430	47080431	rs1994969	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q21.32	IGF2BP1	rs1994969-T	NR	2E-14		0.027	[-0.02592-0.07992] unit decrease	Illumina [2446724] (imputed)	N
944	chr17	47080430	47080431	rs1994969	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		17q21.32	IGF2BP1	rs1994969-T	NR	7E-16		0.19	[0.14-0.24] unit increase	Illumina [2446724] (imputed)	N
944	chr17	47081879	47081880	rs28391589	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs28391589-A	NR	7E-6	(male)	0.1541	[0.087-0.221] unit decrease	Illumina [11133794] (imputed)	N
944	chr17	47084710	47084711	rs9674544	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	17q21.32	IGF2BP1	rs9674544-G	0.46	8E-7				Illumina [300766]	N
944	chr17	47084710	47084711	rs9674544	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q21.32	IGF2BP1	rs9674544-G	0.46	2E-8				Illumina [300766]	N
944	chr17	47090297	47090298	rs6504592	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	17q21.32	IGF2BP1	rs6504592-?		6E-6	(EA)	0.24448209	[0.14-0.35] unit increase	Illumina [13620258] (imputed)	N
944	chr17	47090587	47090591	rs35297686	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs35297686-?	NR	6E-7	(male)	0.1631	[0.099-0.227] unit decrease	Illumina [11133794] (imputed)	N
944	chr17	47090592	47090596	rs200285875	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs200285875-?	NR	2E-7	(male)	0.1738	[0.11-0.24] unit decrease	Illumina [11133794] (imputed)	N
944	chr17	47090784	47090785	rs11079849	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q21.32		rs11079849-T	0.29	5E-18		8.65	z score increase	Affymetrix [9061022] (imputed)	N
944	chr17	47090784	47090785	rs11079849	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	17q21.32		rs11079849-C	0.67	2E-10		0.013	nmol/L decrease	NR [NR] (imputed)	N
944	chr17	47090784	47090785	rs11079849	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q21.32		rs11079849-C	0.67	2E-13				NR [NR] (imputed)	N
944	chr17	47090784	47090785	rs11079849	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	17q21.32		rs11079849-C	0.67	1E-7		0.01	mmol/L decrease	NR [NR] (imputed)	N
944	chr17	47090784	47090785	rs11079849	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q21.32		rs11079849-C	0.67	6E-17		0.013	% increase	NR [NR] (imputed)	N
944	chr17	47090784	47090785	rs11079849	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.32	NR	rs11079849-C	0.290258	8E-11		0.0449931	[0.031-0.059] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
944	chr17	47090784	47090785	rs11079849	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q21.32	IGF2BP1	rs11079849-C	0.671402	6E-17		0.0122339	[0.0094-0.0151] unit increase	Affymetrix [12370749]	N
944	chr17	47090784	47090785	rs11079849	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs11079849-?	NR	3E-24				Affymetrix [~ 8270000] (imputed)	N
944	chr17	47090784	47090785	rs11079849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q21.32		rs11079849-?	NR	1E-24				NR [~ 8900000] (imputed)	N
944	chr17	47090784	47090785	rs11079849	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.32	Intergenic	rs11079849-T	0.3282	2E-10	(MTAG)	0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
944	chr17	47090784	47090785	rs11079849	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q21.32	Intergenic	rs11079849-T	0.3282	6E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
944	chr17	47090784	47090785	rs11079849	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q21.32	NR	rs11079849-T	NR	2E-8		5.591	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
944	chr17	47091419	47091420	rs9906944	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	17q21.32		rs9906944-?	NR	2E-12		0.0462	[0.026-0.067] unit increase	NR [NR] (imputed)	N
944	chr17	47091419	47091420	rs9906944	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	17q21.32		rs9906944-?	NR	2E-9				NR [9705931] (imputed)	N
944	chr17	47091419	47091420	rs9906944	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	17q21.32		rs9906944-?	NR	2E-8				NR [7857346] (imputed)	N
944	chr17	47091419	47091420	rs9906944	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q21.32	NA	rs9906944-T	0.3524	9E-23		0.0178	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
944	chr17	47091419	47091420	rs9906944	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.32	NR	rs9906944-?	NR	1E-7		5.298	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
944	chr17	47091419	47091420	rs9906944	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q21.32	IGF2BP1	rs9906944-T	NR	7E-9		0.018285258	[0.012-0.024] unit increase	Affymetrix [NR]	N
944	chr17	47091419	47091420	rs9906944	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	17q21.32	IGF2BP1	rs9906944-C	0.67	3E-8		0.033	[0.021-0.045] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
944	chr17	47091419	47091420	rs9906944	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	17q21.32	IGF2BP1	rs9906944-C	0.66	2E-8	(European)	0.035	[0.023-0.047] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
944	chr17	47093397	47093398	rs4794018	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	17q21.32	IGF2BP1	rs4794018-C	0.337	2E-8	(EA)	0.03221	[0.021-0.044] unit increase	Affymetrix [up to 12500000] (imputed)	N
944	chr17	47094273	47094274	rs9902512	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	17q21.32	IGF2BP1	rs9902512-C	0.664	6E-9		5.81	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
944	chr17	47106877	47106878	rs9899580	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	17q21.32	NR	rs9899580-A		6E-6				Illumina [458525]	N
944	chr17	47111745	47111746	rs141961318	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.32	NR	rs141961318-?	NR	4E-8	(right medial orbitofrontal)			NR [9227495] (imputed)	N
944	chr17	47112116	47112117	rs376942435	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	17q21.32	IGF2BP1	rs376942435-A	NR	6E-10		0.00844882	[0.0058-0.0111] unit decrease	Affymetrix [10061374] (imputed)	N
944	chr17	47114304	47114309	rs146720947	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q21.32	NR	rs146720947-?	NR	6E-6	(male)	0.1555	[0.088-0.223] unit decrease	Illumina [11133794] (imputed)	N
944	chr17	47123422	47123423	rs4643373	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q21.32	NR	rs4643373-T	0.7006	2E-10		1.042	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
944	chr17	47123422	47123423	rs4643373	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	17q21.32	UBE2Z	rs4643373-T	0.724	1E-6		1.05	[1.03-1.07]	Affymetrix [9149595] (imputed)	N
944	chr17	47128246	47128247	rs2969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.32	IGF2BP1	rs2969-T	NR	4E-11		0.0215885	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
944	chr17	47135874	47135875	rs68085814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.32		rs68085814-?	NR	3E-14				NR [~ 8900000] (imputed)	N
944	chr17	47140793	47140794	rs11655587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q21.32		rs11655587-T	NR	3E-18		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
944	chr17	47140793	47140794	rs11655587	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q21.32	NR	rs11655587-T	0.359	1E-11		0.017512238	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
944	chr17	47140793	47140794	rs11655587	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q21.32	NA	rs11655587-T	0.3572	7E-26		0.021	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
944	chr17	47156346	47156347	rs11079853	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs11079853-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
944	chr17	47177746	47177747	rs9972911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.32	NR	rs9972911-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
945	chr17	47190298	47190299	rs1916295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q21.32		rs1916295-T	NR	3E-9		0.0193	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
945	chr17	47190298	47190299	rs1916295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q21.32		rs1916295-T	NR	2E-10		0.0208	[0.015-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
945	chr17	47192619	47192620	rs11653468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q21.32		rs11653468-A	NR	3E-9		0.0561	[0.037-0.075] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
945	chr17	47192619	47192620	rs11653468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17q21.32		rs11653468-A	NR	5E-9		0.0387	[0.026-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
945	chr17	47192619	47192620	rs11653468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs11653468-A	NR	8E-12		0.0203	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
945	chr17	47192619	47192620	rs11653468	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	17q21.32	Metazoa_SRP	rs11653468-A	0.235338	3E-9		0.056122836	[0.038-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
945	chr17	47192619	47192620	rs11653468	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q21.32	Metazoa_SRP	rs11653468-A	0.234355	5E-12		0.04902191	[0.035-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
945	chr17	47192619	47192620	rs11653468	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	17q21.32	Metazoa_SRP	rs11653468-A	0.233873	5E-9		0.03866431	[0.026-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
945	chr17	47218973	47218974	rs55636513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs55636513-T	NR	9E-24		0.0629	[0.051-0.075] unit increase	Affymetrix [9000000] (imputed)	N
945	chr17	47222662	47222663	rs2091041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.32	B4GALNT2	rs2091041-C	0.215439	4E-11		0.017808799	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr17	47225735	47225736	rs191896574	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.32	B4GALNT2	rs191896574-T	0.982	4E-9		0.162	[0.11-0.22] unit increase	Affymetrix [7947838] (imputed)	N
945	chr17	47241641	47241642	rs72835417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs72835417-A	NR	6E-21		0.0378	[0.03-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr17	47251649	47251650	rs4794027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.32	NR	rs4794027-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
945	chr17	47254615	47254616	rs117315138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs117315138-G	NR	1E-10		0.0488	[0.034-0.064] unit increase	Affymetrix [9000000] (imputed)	N
945	chr17	47263474	47263475	rs11654644	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q21.32	B4GALNT2, TRNA_Gln	rs11654644-T	0.2101	3E-10		6.316	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
945	chr17	47280300	47280301	rs4794029	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q21.32	NR	rs4794029-?	NR	2E-10		0.138761	[0.096-0.182] unit decrease	NR [13958389] (imputed)	N
945	chr17	47280300	47280301	rs4794029	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17q21.32	NR	rs4794029-?	NR	2E-8		0.105089	[0.068-0.142] unit increase	NR [13958389] (imputed)	N
945	chr17	47280300	47280301	rs4794029	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	17q21.32	GNGT2	rs4794029-?	NR	7E-6				Illumina [7401356] (imputed)	N
945	chr17	47280300	47280301	rs4794029	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	17q21.32	GNGT2	rs4794029-?	NR	1E-5				Illumina [7401356] (imputed)	N
945	chr17	47280914	47280915	rs7222840	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q21.32	B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB	rs7222840-?		1E-44				Affymetrix, Illumina [NR] (imputed)	N
945	chr17	47284734	47284735	rs35638197	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q21.32	NR	rs35638197-T		6E-15		0.18	[0.14-0.22] unit increase	NR [NR]	N
945	chr17	47285765	47285766	rs850526	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	17q21.32	Intergenic	rs850526-C	0.29	1E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [7891602] (imputed)	N
945	chr17	47290794	47290795	rs627386	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q21.32	NR	rs627386-G	0.974019461024499	4E-6	(IGP9)	0.5473	[0.32-0.78] unit increase	Illumina [~ 2500000] (imputed)	N
945	chr17	47292697	47292698	rs686259	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.32	GNGT2	rs686259-?	NR	3E-6	(LPE 18:0)	0.8696516	[0.5-1.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
945	chr17	47297296	47297297	rs616338	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	17q21.32	ABI3	rs616338-T	NR	5E-10		1.4296066	[1.3-1.6]	Illumina [241551]	N
945	chr17	47299788	47299789	rs55978930	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q21.32	NR	rs55978930-G		2E-23		0.12	[0.1-0.14] unit increase	NR [NR]	N
945	chr17	47306808	47306809	rs36036830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs36036830-G	NR	2E-9		0.0482	[0.032-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr17	47307273	47307274	rs617182	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	17q21.32	PHOSPHO1	rs617182-?	NR	5E-6				Illumina [7401356] (imputed)	N
946	chr17	47318156	47318157	rs1859437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs1859437-A	NR	9E-15		0.0338	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
946	chr17	47320417	47320418	rs36006455	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	17q21.32	FLJ40194	rs36006455-T	0.72	3E-7				Affymetrix, Illumina [8002429] (imputed)	N
946	chr17	47322263	47322264	rs12601665	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q21.32	NR	rs12601665-C	0.57645	2E-10		0.012344	[0.0085-0.0162] unit increase	NR [NR]	N
946	chr17	47328182	47328183	rs28397663	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q21.32		rs28397663-C	0.629	2E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
946	chr17	47328182	47328183	rs28397663	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q21.32	NR	rs28397663-T	0.366467	2E-8		0.0590539	[0.039-0.079] unit increase	Affymetrix [21375087] (imputed)	N
946	chr17	47328182	47328183	rs28397663	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q21.32	NR	rs28397663-T	0.367	1E-9		0.00684405	[0.0046-0.0091] unit increase	NR [9732723] (imputed)	N
946	chr17	47328182	47328183	rs28397663	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	17q21.32	NR	rs28397663-T	0.365	2E-8		0.0129928	[0.0085-0.0175] unit increase	NR [9732723] (imputed)	N
946	chr17	47328182	47328183	rs28397663	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	17q21.32	FLJ40194	rs28397663-?	NR	4E-8		1.046	[1.029-1.062]	Illumina [12845910] (imputed)	N
946	chr17	47331986	47331987	rs663576	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q21.32	FLJ40194	rs663576-C	0.4625	1E-8		0.081	[0.053-0.109] unit decrease	Affymetrix [~ 11900000] (imputed)	N
946	chr17	47340296	47340297	rs2011767	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	17q21.32	FLJ40194, MIR6129	rs2011767-T	0.459	1E-13				Affymetrix [28000000] (imputed)	N
946	chr17	47340660	47340660	rs34338189	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	17q21.32	FLJ40194	rs34338189-T	0.530916	8E-9		1.06	[1.04-1.09]	NR [10903881] (imputed)	N
946	chr17	47340956	47340957	rs75535096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs75535096-T	NR	6E-21		0.0707	[0.056-0.085] unit increase	Affymetrix [9000000] (imputed)	N
946	chr17	47341579	47341580	rs9899665	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	17q21.32	ZNF652	rs9899665-T	0.457	8E-8		0.069	[0.044-0.094] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
946	chr17	47345185	47345186	rs11650494	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	17q21.32	RP1-62O9.3, ZNF652	rs11650494-A	0.04	3E-9		1.96	[1.46-2.12] unit increase	Illumina [185478]	N
946	chr17	47345185	47345186	rs11650494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	17q21.32	NR	rs11650494-A	NR	2E-11		0.0309	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
946	chr17	47345185	47345186	rs11650494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs11650494-A	NR	2E-150		0.1193	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
946	chr17	47345185	47345186	rs11650494	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q21.32	NR	rs11650494-A	0.08	9E-12		1.1	[1.07-1.14]	Illumina [20370935] (imputed)	N
946	chr17	47345185	47345186	rs11650494	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	17q21.32	NGFR, PHB, PHOSPHO1, HOXB13, PRAC, SPOP, ZNF652, ABI3, B4GALNT2, FLJ40194, GNGT2, IGF2BP1	rs11650494-A	0.08	2E-9		1.15	[1.09-1.22]	Illumina [~ 2600000] (imputed)	N
946	chr17	47345796	47345797	rs117993381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.32	NR	rs117993381-T	NR	1E-10		0.0428	[0.03-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr17	47348851	47348852	rs12949836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	17q21.32		rs12949836-G	NR	2E-8		0.0541	[0.035-0.073] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
946	chr17	47349051	47349052	rs7225606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q21.32		rs7225606-G	NR	4E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
946	chr17	47357968	47357969	rs11079868	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	17q21.32	FLJ40194	rs11079868-?	NR	7E-9		0.0739	[0.049-0.099] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
946	chr17	47358480	47358481	rs4794033	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.32	NR	rs4794033-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
946	chr17	47358480	47358481	rs4794033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.32		rs4794033-?	NR	7E-10				NR [~ 8900000] (imputed)	N
946	chr17	47358732	47358733	rs12942379	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.32	NR	rs12942379-T	0.319507	3E-114		0.0192256	[0.018-0.021] unit increase	Affymetrix [16582909] (imputed)	N
946	chr17	47358732	47358733	rs12942379	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.32	NR	rs12942379-T	0.319507	2E-113		0.0215814	[0.02-0.023] unit increase	Affymetrix [16582965] (imputed)	N
946	chr17	47362990	47362991	rs11653686	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q21.32	NR	rs11653686-C	0.913205	8E-48		0.0656834	[0.057-0.074] unit increase	Affymetrix [16585745] (imputed)	N
946	chr17	47364106	47364107	rs11655056	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q21.32	intergenic	rs11655056-?	NR	6E-10		0.0163	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
946	chr17	47364106	47364107	rs11655056	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17q21.32	MIR6129	rs11655056-C	0.46087	4E-8		0.0359929	[0.023-0.049] unit increase	Affymetrix [9463307] (imputed)	N
946	chr17	47379485	47379486	rs34666276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17q21.33	ZNF652	rs34666276-C	0.3651	9E-10		0.02284161	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
946	chr17	47379485	47379486	rs34666276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q21.33	ZNF652	rs34666276-C	0.365	5E-13		0.02684805	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
946	chr17	47379580	47379581	rs2960172	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.33	ZNF652	rs2960172-A	NR	2E-6		1.0571942	NR	Affymetrix, Illumina [8278136] (imputed)	N
946	chr17	47379866	47379867	rs140302625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q21.33	NR	rs140302625-T	0.08650999999999998	4E-193		0.0622307	[0.058-0.066] unit increase	Affymetrix [16585854] (imputed)	N
946	chr17	47379866	47379867	rs140302625	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q21.33	NR	rs140302625-T	0.08650999999999998	9E-166		0.0668543	[0.062-0.072] unit increase	Affymetrix [16585866] (imputed)	N
946	chr17	47380304	47380305	rs2960158	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q21.33	NR	rs2960158-T	NR	1E-8		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
946	chr17	47390013	47390014	rs2072153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.33		rs2072153-?	NR	3E-9				NR [~ 8900000] (imputed)	N
946	chr17	47390013	47390014	rs2072153	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.33	ZNF652	rs2072153-C	0.3	4E-8		0.021	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
946	chr17	47398069	47398070	rs9889262	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17q21.33		rs9889262-?	NR	3E-10				NR [9705931] (imputed)	N
946	chr17	47398069	47398070	rs9889262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs9889262-A	0.321157	6E-41				Affymetrix, Illumina [19872809] (imputed)	N
946	chr17	47398069	47398070	rs9889262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.33	NR	rs9889262-A	0.364102	4E-43		0.028459	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
946	chr17	47398069	47398070	rs9889262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q21.33		rs9889262-?	NR	1E-14				NR [~ 8900000] (imputed)	N
946	chr17	47398069	47398070	rs9889262	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.33	ZNF652	rs9889262-A	0.35	1E-15		1.043	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
946	chr17	47398069	47398070	rs9889262	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q21.33	ZNF652	rs9889262-A	0.366	1E-11		0.02527954	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
946	chr17	47398069	47398070	rs9889262	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q21.33	ZNF652	rs9889262-A	0.366	1E-13		0.02748114	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
946	chr17	47398244	47398245	rs565189650	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q21.33	NR	rs565189650-T	NR	2E-14		1.107	[1.08-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
946	chr17	47398244	47398245	rs565189650	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	17q21.33	NR	rs565189650-T	0.087	8E-6		1.174	[1.09-1.26]	Affymetrix, Illumina [18877980] (imputed)	N
946	chr17	47402806	47402807	rs12940887	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q21.33	ZNF652	rs12940887-T	0.374	1E-8	(EA, initial)	0.26	[0.17-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
946	chr17	47402806	47402807	rs12940887	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	17q21.33	ZNF652	rs12940887-T	0.38	7E-8		0.321	[0.2-0.44] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
946	chr17	47402806	47402807	rs12940887	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	17q21.33	ZNF652	rs12940887-T	0.38	1E-12		0.261	[0.19-0.33] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
946	chr17	47402806	47402807	rs12940887	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	17q21.33	ZNF652	rs12940887-T	0.42	2E-7	(Mean Arterial Pressure)	0.252	[0.16-0.35] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
946	chr17	47404627	47404628	rs62076439	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q21.33	ZNF652	rs62076439-T	0.336995	1E-9		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
946	chr17	47404627	47404628	rs62076439	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q21.33	NR	rs62076439-T	0.36	2E-8		0.00860341	[0.0056-0.0116] unit decrease	NR [9732723] (imputed)	N
946	chr17	47404627	47404628	rs62076439	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q21.33	ZNF652	rs62076439-T	0.3409	2E-15		0.048	[0.036-0.06] unit increase	Affymetrix [at least 7947838] (imputed)	N
946	chr17	47405348	47405349	rs6504606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q21.33		rs6504606-G	NR	2E-8		0.0559	[0.036-0.075] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
946	chr17	47407070	47407071	rs12185242	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.33	ZNF652	rs12185242-A	0.545164	4E-18		0.0173785	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
946	chr17	47407070	47407071	rs12185242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.33		rs12185242-?	NR	9E-12				NR [~ 8900000] (imputed)	N
946	chr17	47407831	47407837	rs58013973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q21.33		rs58013973-G	NR	2E-15		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
946	chr17	47412241	47412242	rs1343795	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (maternal genetic effects)	201 European ancestry complete and incomplete trios	NA		ZNF652	rs1343795-?	NR	4E-7				Illumina [NR]	N
946	chr17	47418177	47418178	rs35587648	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q21.33	ZNF652	rs35587648-A	0.382805044657283	5E-12		0.0323	[0.023-0.041] SD increase	Illumina [22400000] (imputed)	N
946	chr17	47418177	47418178	rs35587648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.33		rs35587648-?	NR	7E-42				NR [~ 8900000] (imputed)	N
946	chr17	47422362	47422363	rs11652146	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	17q21.33	NR	rs11652146-?	NR	2E-7				NR [1800000]	N
946	chr17	47422509	47422510	rs35073649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	17q21.33		rs35073649-T	NR	2E-10		0.0522	[0.036-0.068] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
946	chr17	47422509	47422510	rs35073649	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	17q21.33	NR	rs35073649-t	0.3931	2E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [16201029] (imputed)	N
946	chr17	47423739	47423740	rs7207729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.33	ZNF652	rs7207729-T	0.36772	5E-12		0.016116867	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
946	chr17	47436748	47436749	rs7210100	21602798	Haiman CA	2011-05-22	Nat Genet	Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.	Prostate cancer	3,425 African American cases, 3,290 African American controls	1,500 African American/Afro-Caribbean cases, 1,908 African American/Afro-Caribbean controls, 344 Sub-Saharan African ancestry cases, 1,361 Sub-Saharan African ancestry controls	17q21.33	ZNF652	rs7210100-?	0.05	3E-13		1.51	[1.35-1.69]	Illumina [10471986]	N
946	chr17	47439301	47439302	rs112502960	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q21.33	ZNF652	rs112502960-A	0.363325053738655	8E-17		0.056790594	[0.043-0.07] unit increase	Affymetrix [35186738] (imputed)	N
946	chr17	47439301	47439302	rs112502960	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q21.33	NR	rs112502960-?		4E-12				NR [7428630] (imputed)	N
946	chr17	47439301	47439302	rs112502960	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	17q21.33	ZNF652	rs112502960-A	0.3592	4E-11		1.11	[1.08-1.15]	Affymetrix [33771858] (imputed)	N
946	chr17	47440465	47440466	rs16948048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.33		rs16948048-G	0.133202	2E-14		0.0227488	[0.017-0.029] unit decrease	Illumina [13479295] (imputed)	N
946	chr17	47440465	47440466	rs16948048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	17q21.33		rs16948048-G	NR	4E-8		0.0924	[0.059-0.125] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
946	chr17	47440465	47440466	rs16948048	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q21.33	IGF2BP1, ZNF652, RP11-81K2.1	rs16948048-?		1E-13				NR [7428630] (imputed)	N
946	chr17	47440465	47440466	rs16948048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	17q21.33	NR	rs16948048-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
946	chr17	47440465	47440466	rs16948048	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.33	LOC102724596	rs16948048-?	NR	1E-12		0.029743247	[0.022-0.038] unit decrease	Illumina [27896057] (imputed)	N
946	chr17	47440465	47440466	rs16948048	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q21.33	LOC102724596, ZNF652	rs16948048-A	0.6308	3E-16		0.0534	[0.041-0.066] unit decrease	NR [8041861] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	ZNF652, PHB	rs16948048-A		1E-7		0.296	unit decrease	Affymetrix [at least 2696785] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.33	ZNF652, PHB	rs16948048-A		5E-12		0.271	unit decrease	Affymetrix [at least 2696785] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	ZNF652, PHB	rs16948048-A		4E-13		0.266	unit decrease	Affymetrix [at least 2696785] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	ZNF652, PHB	rs16948048-A		1E-9	(EA)	0.242	unit decrease	Affymetrix [at least 2696785] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.33	ZNF652, PHB	rs16948048-A		1E-20		0.224	unit decrease	Affymetrix [at least 2696785] (imputed)	N
946	chr17	47440465	47440466	rs16948048	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q21.33	ZNF652	rs16948048-A	0.6357	3E-7		0.0173	unit decrease	Illumina [242296]	N
946	chr17	47440465	47440466	rs16948048	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	17q21.33	ZNF652	rs16948048-G	0.3848	3E-9		1.17	[1.11-1.23]	Illumina [128830]	N
946	chr17	47440465	47440466	rs16948048	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	17q21.33	PHB, ZNF652	rs16948048-G	0.39	5E-9		0.31	[0.21-0.41] mm Hg increase	Affymetrix, Illumina [2497993] (imputed)	N
946	chr17	47444793	47444794	rs1317701	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	17q21.33	NR	rs1317701-C	0.311825	4E-34		0.0167637	[0.014-0.019] unit increase	Affymetrix [16578495] (imputed)	N
946	chr17	47445750	47445751	rs2411984	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17q21.33	ZNF652	rs2411984-A	0.28	4E-14	(Men + Women)	0.033	[0.024-0.042] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
946	chr17	47445750	47445751	rs2411984	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	17q21.33	ZNF652	rs2411984-A	0.28	2E-10	(Men)	0.034	[0.023-0.045] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
947	chr17	47448171	47448172	rs11655704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q21.33		rs11655704-C	NR	4E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
947	chr17	47448171	47448172	rs11655704	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17q21.33	NR	rs11655704-T	0.68	1E-21		1.13	NR	NR [8853336] (imputed)	N
947	chr17	47448171	47448172	rs11655704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.33	NR	rs11655704-C	0.314056	2E-302		0.0317174	[0.03-0.033] unit increase	Affymetrix [16582909] (imputed)	N
947	chr17	47448171	47448172	rs11655704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q21.33	NR	rs11655704-C	0.31483300000000003	2E-147		0.0299786	[0.028-0.032] unit increase	Affymetrix [16582621] (imputed)	N
947	chr17	47448171	47448172	rs11655704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.33	NR	rs11655704-C	0.314056	2E-265		0.0333638	[0.031-0.035] unit increase	Affymetrix [16582965] (imputed)	N
947	chr17	47448171	47448172	rs11655704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q21.33	NR	rs11655704-C	0.31483300000000003	5E-136		0.0311623	[0.029-0.034] unit increase	Affymetrix [16582614] (imputed)	N
947	chr17	47448345	47448346	rs12952581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q21.33		rs12952581-A	NR	1E-33		0.0213	[0.018-0.025] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
947	chr17	47448345	47448346	rs12952581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q21.33		rs12952581-G	0.637	2E-19				Affymetrix [10369434] (imputed)	N
947	chr17	47448345	47448346	rs12952581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.33	RP11-81K2.1	rs12952581-A	0.362376	2E-37		0.029541854	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
947	chr17	47448345	47448346	rs12952581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.33	RP11-81K2.1	rs12952581-A	0.362374	4E-39		0.03018547	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
947	chr17	47448345	47448346	rs12952581	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q21.33	LOC102724596	rs12952581-A	0.35009	5E-21		1.0613797	1.0482954853923-1.07462705454153]	NR [9572556] (imputed)	N
947	chr17	47448345	47448346	rs12952581	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	17q21.33	LOC102724596, ZNF652, PHB, MIR6129, LOC101927207, FLJ40194	rs12952581-A	0.363	2E-18		1.0592	[1.05-1.07]	Affymetrix [32463443] (imputed)	N
947	chr17	47448345	47448346	rs12952581	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.33	NR	rs12952581-A	0.3627	3E-13		1.046	[1.034-1.058]	Affymetrix [15688218] (imputed)	N
947	chr17	47448345	47448346	rs12952581	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	17q21.33	ZNF652, RP11-81K2.1	rs12952581-A	0.3627	6E-19				Affymetrix [15688218] (imputed)	N
947	chr17	47448345	47448346	rs12952581	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	17q21.33	NR	rs12952581-A	0.3627	5E-16		1.047	[1.036-1.059]	Affymetrix [15688218] (imputed)	N
947	chr17	47448345	47448346	rs12952581	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	17q21.33	RP11-81K2.1	rs12952581-A	0.36465	6E-11		0.06125392	[0.043-0.08] unit increase	Affymetrix [7288503] (imputed)	N
947	chr17	47448345	47448346	rs12952581	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.33	ZNF652, PHB	rs12952581-?	NR	4E-24		1.078	[1.06-1.09]	Affymetrix [9000000] (imputed)	N
947	chr17	47448345	47448346	rs12952581	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.33	ZNF652, PHB	rs12952581-A	NR	7E-16		1.059	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
947	chr17	47448345	47448346	rs12952581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.33		rs12952581-?	NR	5E-43				NR [~ 8900000] (imputed)	N
947	chr17	47450056	47450057	rs7209400	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	17q21.33	LOC102724596	rs7209400-T	0.453	2E-12				Affymetrix [28000000] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.54	3E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.53	6E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.54	5E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.55	3E-17	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.54	1E-18	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.55	2E-9	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450056	47450057	rs7209400	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	17q21.33	LOC102724596, ZNF652	rs7209400-T	0.54	1E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
947	chr17	47450520	47450521	rs35317317	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	17q21.33	RP11-81K2.1	rs35317317-A	0.374293	2E-11		0.055267323	[0.039-0.071] unit increase	Affymetrix [7288503] (imputed)	N
947	chr17	47450774	47450775	rs28394864	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	17q21.33		rs28394864-?	NR	5E-10				Illumina [NR] (imputed)	N
947	chr17	47450774	47450775	rs28394864	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q21.33	NR	rs28394864-G	0.539415	2E-72		0.0529464	[0.047-0.059] unit increase	Affymetrix [16577313] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.33	ZNF652	rs28394864-A	0.450412	4E-17	(females)	0.02367	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.33	ZNF652	rs28394864-A	0.450412	3E-16		0.01824	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.33	ZNF652	rs28394864-A	0.450412	2E-10		0.01385	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.33	ZNF652	rs28394864-A	0.450412	1E-11	(females)	0.01928	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	17q21.33	ZNF652	rs28394864-A	0.450412	5E-9		0.01561	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	17q21.33	ABI3	rs28394864-A	NR	7E-6		4.5	NR z-score increase	Affymetrix [10847151] (imputed)	N
947	chr17	47450774	47450775	rs28394864	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	17q21.33	ABI3	rs28394864-A	0.473	2E-8		5.62	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
947	chr17	47452262	47452263	rs11655191	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17q21.33	NR	rs11655191-C	0.913832	1E-27		0.0391797	[0.032-0.046] unit increase	Affymetrix [16583148] (imputed)	N
947	chr17	47454506	47454507	rs28406364	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	17q21.33		rs28406364-T	0.3885	8E-11		1.08		Affymetrix, Illumina [9397031] (imputed)	N
947	chr17	47454506	47454507	rs28406364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q21.33		rs28406364-T	NR	2E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
947	chr17	47454506	47454507	rs28406364	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	17q21.33	LOC102724596	rs28406364-C	0.622894	8E-15		0.0165423	[0.012-0.021] unit increase	NR [16516521] (imputed)	N
947	chr17	47454506	47454507	rs28406364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.33	NR	rs28406364-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
947	chr17	47454506	47454507	rs28406364	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	17q21.33	ZNF652, PHB	rs28406364-T	0.377	1E-11		1.108	[1.076-1.142]	Affymetrix [10894596] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	NR	rs28406364-C		5E-6	(EA)	0.279	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	NR	rs28406364-C		2E-8		0.316	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.33	NR	rs28406364-C		3E-12		0.277	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	NR	rs28406364-C		6E-14		0.274	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q21.33	NR	rs28406364-C		3E-10	(EA)	0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454506	47454507	rs28406364	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q21.33	NR	rs28406364-C		3E-21		0.23	unit decrease	Affymetrix [at least 2696785] (imputed)	N
947	chr17	47454514	47454515	rs28412876	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q21.33	NR	rs28412876-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
947	chr17	47454514	47454515	rs28412876	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	17q21.33	ABI3, FLJ40194, GNGT2, LOC102724596, MIR6129, PHOSPHO1, ZNF652	rs28412876-T	0.376281	2E-15		1.0518458	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
947	chr17	47454514	47454515	rs28412876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q21.33		rs28412876-?	NR	3E-21				NR [~ 8900000] (imputed)	N
947	chr17	47461432	47461433	rs17637472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q21.33		rs17637472-A	NR	3E-8		0.0807	[0.052-0.109] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
947	chr17	47461432	47461433	rs17637472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	17q21.33		rs17637472-A	NR	2E-11		0.0639	[0.045-0.083] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
947	chr17	47461432	47461433	rs17637472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q21.33		rs17637472-A	NR	2E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
947	chr17	47461432	47461433	rs17637472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17q21.33		rs17637472-A	NR	1E-13		0.0419	[0.031-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
947	chr17	47461432	47461433	rs17637472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q21.33	RP11-81K2.1	rs17637472-A	0.400057	2E-11		0.01523369	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
947	chr17	47461432	47461433	rs17637472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs17637472-A	0.351453	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
947	chr17	47461432	47461433	rs17637472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q21.33	NR	rs17637472-A	0.40007	3E-14		0.014691	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
947	chr17	47461432	47461433	rs17637472	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q21.33	RP11-81K2.1	rs17637472-G	0.601401	4E-14		0.0109071	[0.0081-0.0137] unit decrease	Affymetrix [12370749]	N
947	chr17	47461432	47461433	rs17637472	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q21.33	ZNF652, PHB	rs17637472-A	0.39	6E-28				NR [> 9500000] (imputed)	N
947	chr17	47461432	47461433	rs17637472	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q21.33	RP11-81K2.1	rs17637472-A	0.39989	7E-15		0.048654094	[0.036-0.061] unit increase	Affymetrix [7288503] (imputed)	N
947	chr17	47461432	47461433	rs17637472	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	17q21.33	ZNF652, PHB	rs17637472-A	0.39	7E-9		1.08	[1.05-1.11]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
947	chr17	47461432	47461433	rs17637472	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	17q21.33	ZNF652, PHB	rs17637472-A	0.39	3E-9		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
947	chr17	47461432	47461433	rs17637472	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	17q21.33	Intergenic	rs17637472-?	NR	3E-8		0.024	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
947	chr17	47465743	47465743	rs10667251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	17q21.33		rs10667251-ATCT	NR	4E-18		0.0644	[0.05-0.079] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
947	chr17	47465743	47465743	rs10667251	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	17q21.33	ZNF652, PHB	rs10667251-?	NR	5E-9		1.043	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
947	chr17	47465743	47465743	rs10667251	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.33	ZNF652, PHB	rs10667251-A	NR	1E-14		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
947	chr17	47465743	47465743	rs10667251	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q21.33	RP11-81K2.1	rs10667251-ATCT	0.4183	4E-13		0.02656196	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
947	chr17	47468010	47468011	rs2671654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	17q21.33		rs2671654-G	NR	4E-11		0.057	[0.04-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
947	chr17	47468019	47468020	rs2671655	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	17q21.33	LOC102724596	rs2671655-T	0.651	5E-8		1.087	[1.06-1.12]	Illumina [11270530] (imputed)	N
947	chr17	47469185	47469186	rs2412099	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	17q21.33	NR	rs2412099-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
947	chr17	47472364	47472365	rs11653775	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	17q21.33		rs11653775-G	NR	8E-8		1.1564704	NR	Affymetrix [7846216] (imputed)	N
947	chr17	47473615	47473616	rs2671657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	17q21.33		rs2671657-A	NR	1E-8		0.0534	[0.035-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
947	chr17	47474528	47474529	rs2671659	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.33	NR	rs2671659-A	NR	1E-46		0.0376	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
947	chr17	47477145	47477146	rs7212890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.33	NR	rs7212890-C	NR	2E-19		0.0274	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr17	47481373	47481374	rs4987082	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q21.33	NR	rs4987082-C	0.429999	3E-9		0.0585267	[0.039-0.078] unit increase	Affymetrix [21375087] (imputed)	N
947	chr17	47481373	47481374	rs4987082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q21.33		rs4987082-?	NR	3E-15				NR [~ 8900000] (imputed)	N
947	chr17	47482952	47482953	rs2898883	28533516	Cantor RM	2017-05-23	Mol Psychiatry	ASD restricted and repetitive behaviors associated at 17q21.33: genes prioritized by expression in fetal brains.	Restricted and repetitive behaviours in autism spectrum disorder	4,664 European ancestry children from 2,145 families	NA	17q21.33	PHB	rs2898883-?	NR	2E-8	(Repetitive use of objects)			Illumina [at least 3972813] (imputed)	N
947	chr17	47487850	47487851	rs546436080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs546436080-A	0.999064	5E-14				Affymetrix, Illumina [24332387] (imputed)	N
947	chr17	47487850	47487851	rs546436080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs546436080-A	0.999063	2E-46				Affymetrix, Illumina [24246363] (imputed)	N
947	chr17	47487850	47487851	rs546436080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs546436080-A	0.999063	6E-32				Affymetrix, Illumina [20825802] (imputed)	N
947	chr17	47488822	47488823	rs55714120	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q21.33	PHB	rs55714120-?	NR	1E-17		0.047903	[0.037-0.059] unit increase	Illumina [4804024] (imputed)	N
947	chr17	47488822	47488823	rs55714120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs55714120-T	0.287811	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
947	chr17	47488822	47488823	rs55714120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs55714120-T	0.288529	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
947	chr17	47488822	47488823	rs55714120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.33		rs55714120-?	NR	5E-9				NR [~ 8900000] (imputed)	N
947	chr17	47488822	47488823	rs55714120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.33		rs55714120-?	NR	5E-12				NR [~ 8900000] (imputed)	N
947	chr17	47490101	47490102	rs7502499	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.33	PHB	rs7502499-A	0.311	1E-12		0.043	[0.031-0.055] unit increase	Affymetrix [7947838] (imputed)	N
947	chr17	47510583	47510584	rs9912738	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.33	PHB	rs9912738-C	0.6214	9E-9		0.2037	[0.13-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
947	chr17	47513710	47513711	rs8080108	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17q21.33	NR	rs8080108-?	NR	1E-23				NR [up to 7000000]	N
947	chr17	47516522	47516523	rs2584686	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.33	NR	rs2584686-A	NR	2E-23		0.0256	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
947	chr17	47539021	47539022	rs2671668	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	17q21.33	PHB, NGFR	rs2671668-A	0.27	9E-6		4.46	NR Z score decrease	Affymetrix, Illumina [2725778] (imputed)	N
947	chr17	47564011	47564012	rs1035050	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	17q21.33	NR	rs1035050-T	0.40	9E-6		1.17	[1.09-1.25]	Affymetrix, Illumina [2366197] (imputed)	N
947	chr17	47566311	47566312	rs16948200	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	PHB	rs16948200-?	NR	8E-7	(TAG 56:6)	3.147837	[1.9-4.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
947	chr17	47566311	47566312	rs16948200	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	PHB	rs16948200-?	NR	3E-6	(TAG 56:8)	2.9889574	[1.73-4.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
947	chr17	47566311	47566312	rs16948200	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	PHB	rs16948200-?	NR	1E-6	(TAG 58:8)	3.0909898	[1.83-4.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
947	chr17	47566311	47566312	rs16948200	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	17q21.33	NGFR	rs16948200-A		2E-8	(AA)			Illumina [NR]	N
947	chr17	47574710	47574711	rs532346435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.33	NGFR	rs532346435-T	2.99999999999967E-4	2E-9		0.395564	[0.27-0.52] unit increase	Affymetrix [93095623] (imputed)	N
948	chr17	47588760	47588761	rs11079872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q21.33	NR	rs11079872-T	NR	4E-25		0.0472	[0.038-0.056] unit increase	Affymetrix [9000000] (imputed)	N
948	chr17	47588760	47588761	rs11079872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.33		rs11079872-?	NR	2E-9				NR [~ 8900000] (imputed)	N
948	chr17	47600896	47600897	rs116399048	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.33	NR	rs116399048-C	0.0122	2E-8	(C5)	0.04636	NR unit increase	Illumina [1671387] (imputed)	N
948	chr17	47668598	47668600	rs138663269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q21.33		rs138663269-C	NR	2E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
949	chr17	47777539	47777540	rs80080721	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17q21.33	NR	rs80080721-?	NR	3E-11				NR [up to 7000000]	N
949	chr17	47787160	47787161	rs78997619	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	17q21.33	FAM117A	rs78997619-T	0.06	3E-21		0.083	NR unit increase	Illumina [9591901] (imputed)	N
949	chr17	47787160	47787161	rs78997619	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	17q21.33	FAM117A	rs78997619-C	0.96	1E-38		0.037	unit increase	NR [NR]	N
949	chr17	47788783	47788784	rs144428416	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	17q21.33		rs144428416-?	NR	1E-8		0.279025	[0.18-0.38] unit increase	NR [9800000] (imputed)	N
949	chr17	47788783	47788784	rs144428416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.33	FAM117A	rs144428416-A	3.38999999999978E-4	8E-10		0.3851702	[0.26-0.51] unit increase	Affymetrix [93095623] (imputed)	N
949	chr17	47788783	47788784	rs144428416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs144428416-A	3.37000000000032E-4	2E-10		0.390087	[0.28-0.5] unit increase	Affymetrix [93095623] (imputed)	N
949	chr17	47811893	47811894	rs769818449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs769818449-T	7.50999999999946E-4	1E-9		0.249077	[0.17-0.33] unit increase	Affymetrix [93095623] (imputed)	N
949	chr17	47817372	47817373	rs77522818	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	17q21.33	FAM117A	rs77522818-A	0.96	9E-10		0.005	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
949	chr17	47818820	47818821	rs9898058	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Milk allergy	291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	17q21.33	FAM117A	rs9898058-?	NR	1E-6				Illumina [6459842] (imputed)	N
949	chr17	47831848	47831849	rs11656541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.33		rs11656541-C	NR	5E-26		0.0269	[0.022-0.032] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
950	chr17	47849077	47849078	rs149496223	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	17q21.33		rs149496223-C	NR	2E-6		1.85151		Affymetrix, Illumina [62056310] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.29999999999997E-4	3E-10		0.26039207	[0.18-0.34] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.28999999999969E-4	4E-18		0.3573723	[0.28-0.44] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.21999999999989E-4	4E-69		0.7351014	[0.65-0.82] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.28000000000051E-4	4E-70		0.7424043	[0.66-0.82] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.32999999999973E-4	2E-62		0.714622	[0.64-0.79] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.33	FAM117A	rs575705078-G	8.32000000000055E-4	2E-48		0.60154325	[0.52-0.68] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q21.33	NR	rs575705078-A	0.999164	6E-82		0.700197	[0.63-0.77] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
950	chr17	47856908	47856909	rs575705078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q21.33	NR	rs575705078-A	0.999165	1E-61		0.611974	[0.54-0.68] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
950	chr17	47856908	47856909	rs575705078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.33	FAM117A	rs575705078-G	6.0E-4	3E-10		0.5316663	[0.37-0.7] unit decrease	Affymetrix [~ 2500000] (imputed)	N
950	chr17	47857323	47857324	rs35388001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs35388001-T	0.293847	2E-32		0.029353812	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr17	47857323	47857324	rs35388001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.33	FAM117A	rs35388001-T	0.293882	9E-38		0.03208144	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr17	47857323	47857324	rs35388001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q21.33	FAM117A	rs35388001-T	0.293816	4E-23		0.0246347	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr17	47857323	47857324	rs35388001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.33	FAM117A	rs35388001-T	0.293843	3E-15		0.019394165	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr17	47857323	47857324	rs35388001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.33		rs35388001-?	NR	5E-9				NR [~ 8900000] (imputed)	N
950	chr17	47857323	47857324	rs35388001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.33		rs35388001-?	NR	1E-16				NR [~ 8900000] (imputed)	N
950	chr17	47860914	47860915	rs79041579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.33	FAM117A	rs79041579-A	0.189583	1E-10		0.01846778	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47860914	47860915	rs79041579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.33	NR	rs79041579-G	0.815783	6E-10				Affymetrix, Illumina [22063850] (imputed)	N
950	chr17	47860914	47860915	rs79041579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q21.33	NR	rs79041579-G	0.809982	8E-12		0.016924	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
950	chr17	47860914	47860915	rs79041579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.33		rs79041579-?	NR	1E-11				NR [~ 8900000] (imputed)	N
950	chr17	47866531	47866532	rs1123339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q21.33		rs1123339-A	NR	2E-19		0.0422	[0.033-0.051] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
950	chr17	47866531	47866532	rs1123339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q21.33		rs1123339-A	0.155156	3E-17		0.041809	[0.032-0.052] unit increase	Illumina [13476266] (imputed)	N
950	chr17	47866531	47866532	rs1123339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q21.33		rs1123339-A	NR	6E-16		0.0381	[0.029-0.047] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
950	chr17	47866531	47866532	rs1123339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	17q21.33		rs1123339-A	0.154897	2E-14		0.0383228	[0.029-0.048] unit increase	Illumina [13476299] (imputed)	N
950	chr17	47866531	47866532	rs1123339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	17q21.33	NR	rs1123339-G	0.845155	8E-13		0.040233	[0.029-0.051] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
950	chr17	47866531	47866532	rs1123339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	17q21.33	KAT7	rs1123339-?	NR	7E-11		0.03808	[0.027-0.05] unit increase novel	Illumina [6108953] (imputed)	N
950	chr17	47866531	47866532	rs1123339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	17q21.33	KAT7	rs1123339-?	NR	3E-10		0.03683	[0.025-0.048] unit increase novel	Illumina [6108953] (imputed)	N
950	chr17	47873340	47873341	rs59446658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q21.33		rs59446658-T	NR	6E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
950	chr17	47875332	47875333	rs572017140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q21.33	KAT7	rs572017140-A	6.0E-4	1E-23		0.8488039	[0.68-1.01] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr17	47875332	47875333	rs572017140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q21.33	KAT7	rs572017140-A	6.0E-4	5E-15		0.6650864	[0.5-0.83] unit increase	Affymetrix [~ 2500000] (imputed)	N
950	chr17	47883175	47883177	rs144902713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.33	KAT7	rs144902713-C	0.00684799999999997	8E-11		0.0890904	[0.062-0.116] unit increase	Affymetrix [93095623] (imputed)	N
950	chr17	47891903	47891904	rs755736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q21.33		rs755736-G	NR	2E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
950	chr17	47907640	47907641	rs7221118	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q21.33	NR	rs7221118-C	0.2142	3E-11		0.001846	[0.0013-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
950	chr17	47907640	47907641	rs7221118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q21.33		rs7221118-?	NR	2E-10				NR [~ 8900000] (imputed)	N
950	chr17	47919944	47919945	rs78772596	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TAC4	rs78772596-?	NR	5E-10	(female)	4.60631	[NR] unit decrease	Affymetrix [NR] (imputed)	N
950	chr17	47937691	47937692	rs143314913	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	17q21.33	NR	rs143314913-A	0.01674	1E-6		0.5785	[0.35-0.81] unit increase	Illumina [10677593] (imputed)	N
950	chr17	47940665	47940666	rs77534576	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	17q21.33		rs77534576-T	0.03319	2E-7		1.2558091	[1.1520420691888291-1.3689224807814933]	Affymetrix, Illumina [NR] (imputed)	N
950	chr17	47940665	47940666	rs77534576	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	17q21.33		rs77534576-T	0.03275	4E-9		1.4459405	[1.2784125078885984-1.635422073558583]	Illumina [NR] (imputed)	N
950	chr17	47942990	47942992	rs201795884	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17q21.33	NR	rs201795884-G	NR	1E-9		0.0178	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
950	chr17	47946054	47946055	rs60586860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q21.33		rs60586860-T	NR	4E-23		0.0413	[0.033-0.05] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
950	chr17	47946054	47946055	rs60586860	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.33	FLJ45513	rs60586860-C	0.96499	6E-28		0.00719785	[0.006-0.0084] unit decrease	Affymetrix [13995440] (imputed)	N
950	chr17	47946054	47946055	rs60586860	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q21.33	TAC4, DLX4	rs60586860-T	0.034	7E-25		10.3	z-score increase	Affymetrix [4311822] (imputed)	N
950	chr17	47947918	47947919	rs73337077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q21.33	NR	rs73337077-T	NR	6E-18		0.0526	[0.041-0.065] unit increase	Affymetrix [9000000] (imputed)	N
950	chr17	47950328	47950329	rs75432325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	17q21.33		rs75432325-C	0.149766	8E-9		0.0324557	[0.021-0.043] unit increase	Illumina [13474352] (imputed)	N
950	chr17	47950328	47950329	rs75432325	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q21.33	FLJ45513, DLX4	rs75432325-?		2E-9		0.0385	[0.026-0.051] unit increase	Illumina [31500000] (imputed)	N
950	chr17	47950328	47950329	rs75432325	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	17q21.33	FLJ45513, DLX4	rs75432325-?	NR	8E-9		0.03618	[0.024-0.048] unit increase novel	Illumina [6108953] (imputed)	N
950	chr17	47958695	47958696	rs147445890	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	17q21.33		rs147445890-?	NR	3E-7		1.2231138	[1.13215289454126-1.32138270554045]	Illumina [7827597] (imputed)	N
951	chr17	47978985	47978986	rs271674	24578207	Opherk C	2014-02-27	Stroke	Genome-wide genotyping demonstrates a polygenic risk score associated with white matter hyperintensity volume in CADASIL.	White matter hyperintensity volume in cerebral autosomal-dominant arteriopathy with subcortical infarcts and leukoencephalopathy	466 European ancestry individuals	NA	17q21.33	NR	rs271674-T	NR	6E-6		0.0267	[NR] unit increase	Affymetrix [583499]	N
951	chr17	47985428	47985429	rs271679	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q21.33	FLJ45513	rs271679-C	0.4344	3E-11		0.0051	[0.0035-0.0067] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
951	chr17	47986196	47986197	rs271681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.33		rs271681-?	NR	3E-9				NR [~ 8900000] (imputed)	N
951	chr17	47986196	47986197	rs271681	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	17q21.33	FLJ45513, DLX4	rs271681-?	NR	2E-8		0.02028	[0.013-0.027] unit increase novel	Illumina [6108953] (imputed)	N
951	chr17	47988675	47988676	rs8076417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	17q21.33		rs8076417-C	0.433258	2E-8		0.0191914	[0.013-0.026] unit increase	Illumina [13478792] (imputed)	N
951	chr17	47989104	47989105	rs271637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.33		rs271637-?	NR	2E-8				NR [~ 8900000] (imputed)	N
951	chr17	48005747	48005748	rs16948495	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Primary dental caries (decayed and filled teeth)	1,116 children	NA			rs16948495-?	NR	5E-8		2.15	unit decrease	Illumina [8859951] (imputed)	N
951	chr17	48006928	48006929	rs9896363	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q21.33	NR	rs9896363-T	0.0647807	8E-13		0.044896	[0.033-0.057] unit decrease	NR [19129689] (imputed)	N
951	chr17	48008682	48008683	rs9303554	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.33	DLX4	rs9303554-?	NR	3E-11		1.0539628	NR	Affymetrix [9154080] (imputed)	N
951	chr17	48009468	48009469	rs73989024	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	17q21.33	FLJ45513, DLX4	rs73989024-A	0.05	5E-7		0.977	[0.6-1.35] unit decrease	Illumina [~ 9000000] (imputed)	N
951	chr17	48022017	48022018	rs55788912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.33		rs55788912-?	NR	4E-27				NR [~ 8900000] (imputed)	N
951	chr17	48022017	48022018	rs55788912	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q21.33	DLX4	rs55788912-?	NR	6E-26		1.0976949	NR	Affymetrix [9154080] (imputed)	N
951	chr17	48032243	48032244	rs9899933	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Mental health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	17q21.33	intergenic	rs9899933-G	0.06	8E-7		8.35	[5.04-11.66] unit decrease	Illumina [7254516] (imputed)	N
951	chr17	48058855	48058856	rs55899364	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	17q21.33	DLX4, DLX3	rs55899364-?	NR	4E-7		0.134	[0.083-0.185] unit increase	NR [6264382] (imputed)	N
951	chr17	48058855	48058856	rs55899364	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	17q21.33	Intergenic	rs55899364-?		2E-6		103.9	[60.78-147.02] unit decrease	Illumina [~ 10000000] (imputed)	N
952	chr17	48154667	48154668	rs144239147	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	17q21.33		rs144239147-A	0.020768	5E-7		2.293052	NR	Affymetrix [7846216] (imputed)	N
952	chr17	48176334	48176335	rs12945254	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.33	Intergenic	rs12945254-A	0.3892	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
952	chr17	48212909	48212910	rs3744535	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q21.33	HEY2, NCOA7	rs3744535-?		1E-8				NR [7428630] (imputed)	N
952	chr17	48214489	48214490	rs78832434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.33		rs78832434-?	NR	8E-18				NR [~ 8900000] (imputed)	N
952	chr17	48214489	48214490	rs78832434	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs78832434-?	NR	2E-16		0.0460458	[0.035-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
952	chr17	48226810	48226811	rs74676292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q21.33	PPP1R9B	rs74676292-T	0.171179	1E-20		0.027820304	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
952	chr17	48228980	48228981	rs847688	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	17q21.33	PPP1R9B	rs847688-T	0.52	2E-8		0.00503	[0.0033-0.0068] unit increase	Affymetrix [at least 8002429] (imputed)	N
952	chr17	48229440	48229441	rs847687	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q21.33		rs847687-G	0.44	1E-11		6.81	z score increase	Affymetrix [9061022] (imputed)	N
952	chr17	48229440	48229441	rs847687	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q21.33		rs847687-G	0.44	4E-13		7.25	z score increase	Affymetrix [9061022] (imputed)	N
952	chr17	48229440	48229441	rs847687	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q21.33	NR	rs847687-G	0.4732	5E-12				NR [9056863] (imputed)	N
952	chr17	48229440	48229441	rs847687	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	17q21.33	PPP1R9B, SGCA	rs847687-T	0.52	4E-12		0.006	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
953	chr17	48238293	48238294	rs4794106	28081371	Sanders AE	2017-01-12	J Dent Res	GWAS Identifies New Loci for Painful Temporomandibular Disorder: Hispanic Community Health Study/Study of Latinos.	Temporomandibular joint disorder	769 Hispanic cases, 9,384 Hispanic controls	768 European ancestry cases, 4,845 European ancestry controls, 144 Hispanic/Latin American cases, 492 Hispanic/Latin American controls, 999 cases, 2,031 controls	17q21.33	SGCA	rs4794106-T	0.549	3E-6	(Hispanic)	1.296		Illumina [2100000] (imputed)	N
953	chr17	48244530	48244531	rs12939159	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12939159-C	0.883861	1E-12		0.0959826	[0.068-0.124] increase	Affymetrix [11014269] (imputed)	N
953	chr17	48246161	48246162	rs16948744	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.33	SGCA	rs16948744-G	0.639666	3E-10		0.0126698	[0.0087-0.0166] unit increase	NR [13737936] (imputed)	N
953	chr17	48256759	48256759	rs773541730	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs773541730-?	NR	5E-12		0.0170716	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
953	chr17	48260823	48260824	rs79409705	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.33	COL1A1	rs79409705-C	0.958103	7E-24		0.0493428	[0.04-0.059] unit decrease	NR [13737936] (imputed)	N
953	chr17	48262183	48262183	rs3840870	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	17q21.33	COL1A1	rs3840870-?	NR	1E-8				Illumina [20594536] (imputed)	N
953	chr17	48262774	48262775	rs1061237	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs1061237-?	NR	2E-17		0.0513019	[0.039-0.064] unit decrease	Affymetrix [20259828] (imputed)	N
953	chr17	48269020	48269021	rs2075556	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	17q21.33	COL1A1, SGCA	rs2075556-C	NR	3E-9		0.191	[0.13-0.25] unit decrease	Affymetrix [7701190] (imputed)	N
953	chr17	48274290	48274291	rs2075555	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	17q21.33	COL1A1	rs2075555-?	NR	8E-8				Affymetrix [70897]	N
953	chr17	48286864	48286865	rs148781667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	17q21.33	NR	rs148781667-?	NR	3E-6		1.8046	[0.8-2.81] unit increase	Illumina [at least 560000] (imputed)	N
953	chr17	48289069	48289070	rs2586502	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	17q21.33	COL1A1	rs2586502-?	NR	1E-6				Affymetrix, Illumina [~ 1300000]	N
953	chr17	48333348	48333349	rs2696264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.33		rs2696264-?	NR	3E-42				NR [~ 8900000] (imputed)	N
953	chr17	48333348	48333349	rs2696264	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs2696264-?	NR	5E-44		0.0336823	[0.029-0.039] unit decrease	Affymetrix [20259828] (imputed)	N
953	chr17	48333348	48333349	rs2696264	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.33	TMEM92	rs2696264-G	0.772538	7E-8	(men)	0.0335978	[0.022-0.046] unit decrease	NR [17166351] (imputed)	N
953	chr17	48333348	48333349	rs2696264	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.33	TMEM92	rs2696264-G	0.772049	4E-18		0.0338367	[0.026-0.042] unit decrease	NR [17166351] (imputed)	N
953	chr17	48333348	48333349	rs2696264	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q21.33	TMEM92	rs2696264-G	0.771622	1E-9	(women)	0.0330979	[0.022-0.044] unit decrease	NR [17166351] (imputed)	N
953	chr17	48336447	48336448	rs2586457	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.33	TMEM92	rs2586457-G	0.771722	9E-31		0.0258784	[0.021-0.03] unit decrease	NR [13737936] (imputed)	N
954	chr17	48404075	48404076	rs1985762	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	17q21.33	intergenic	rs1985762-T	0.0832	8E-6		1.6842	[1.46-1.91]	Illumina [10736316] (imputed)	N
955	chr17	48545925	48545926	rs201158957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q21.33		rs201158957-A	NR	3E-23		0.1134	[0.091-0.136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
955	chr17	48545925	48545926	rs201158957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.33		rs201158957-A	0.008162	3E-23		0.113365	[0.091-0.136] unit increase	Illumina [13479295] (imputed)	N
955	chr17	48545925	48545926	rs201158957	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.33	CHAD	rs201158957-?	NR	2E-25		0.169164	[0.14-0.2] unit increase	Illumina [27896057] (imputed)	N
955	chr17	48552454	48552455	rs58383597	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.33	ACSF2	rs58383597-C	0.699942	1E-9		0.0123105	[0.0084-0.0163] unit decrease	NR [13737936] (imputed)	N
955	chr17	48558934	48558935	rs35090128	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	17q21.33		rs35090128-?	NR	7E-6		0.6268712	[0.35-0.9] unit increase	Illumina [9901720] (imputed)	N
955	chr17	48576538	48576539	rs111571736	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q21.33	RP11-94C24.6	rs111571736-A	0.9486	4E-6		0.0746	[0.043-0.106] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
955	chr17	48578502	48578503	rs1460212	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	17q21.33		rs1460212-A	NR	8E-6		2.32		Illumina [NR] (imputed)	N
955	chr17	48591208	48591209	rs6504663	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	17q21.33	MYCBPAP	rs6504663-A	0.76	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
955	chr17	48617905	48617906	rs116108967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q21.33	EPN3	rs116108967-A	NR	2E-8		0.0165906	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
955	chr17	48623772	48623773	rs117448789	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	17q21.33	NR	rs117448789-?	NR	7E-6		0.66	[0.35-0.97] unit increase	Illumina [at least 560000] (imputed)	N
955	chr17	48624522	48624523	rs9890200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q21.33	SPATA20	rs9890200-C	NR	2E-9		0.0182227	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
955	chr17	48624522	48624523	rs9890200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.33	SPATA20	rs9890200-C	0.370408	5E-10		0.014368493	[0.0098-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
955	chr17	48624522	48624523	rs9890200	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q21.33	SPATA20	rs9890200-A	0.628554	2E-10		0.0132032	[0.0092-0.0172] unit increase	Affymetrix [NR] (imputed)	N
955	chr17	48624522	48624523	rs9890200	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.33	SPATA20	rs9890200-C	0.376	9E-24	(Spermatogenesis-associated protein 20, SPATA20.11117.2.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
955	chr17	48625927	48625928	rs8076632	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPATA20	5,363 Icelandic ancestry individuals	NA	17q21.33		rs8076632-G	0.4099	8E-149		0.464685	[0.43-0.5] unit decrease	Illumina [7506463] (imputed)	N
955	chr17	48626388	48626389	rs8077316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q21.33	NR	rs8077316-T	0.24602500000000005	2E-10		0.00555329	[0.0037-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
955	chr17	48626388	48626389	rs8077316	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q21.33	NR	rs8077316-T	0.24602500000000005	2E-9		0.00631398	[0.0043-0.0084] unit increase	Affymetrix [16582965] (imputed)	N
956	chr17	48628469	48628470	rs9913430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q21.33		rs9913430-A	NR	3E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
956	chr17	48630451	48630452	rs916978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.33		rs916978-?	NR	2E-11				NR [~ 8900000] (imputed)	N
956	chr17	48632309	48632310	rs1809284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q21.33	NR	rs1809284-G	NR	3E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr17	48634356	48634357	rs6504675	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs6504675-?	NR	1E-9		0.0130334	[0.0088-0.0172] unit increase	Affymetrix [20259828] (imputed)	N
956	chr17	48634563	48634564	rs8077755	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	17q21.33	CACNA1G, AS1	rs8077755-?		3E-6				Illumina [7405822] (imputed)	N
956	chr17	48635051	48635052	rs198535	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q21.33	CACNA1G	rs198535-A	0.5848	3E-10		0.012395981	[0.0085-0.0163] unit decrease	Illumina [9339358] (imputed)	N
956	chr17	48636533	48636534	rs989128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q21.33	CACNA1G-AS1	rs989128-A	0.365327	3E-9		0.013907597	[0.0093-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr17	48636533	48636534	rs989128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.33	CACNA1G-AS1	rs989128-A	0.365268	1E-9		0.014185672	[0.0096-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr17	48636533	48636534	rs989128	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	SPATA20	rs989128-G	0.59953125	4E-81	(SPATA20, 11117_2_3)	0.46295425	[0.42-0.51] unit increase	Illumina [> 1000000] (imputed)	N
956	chr17	48636533	48636534	rs989128	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	17q21.33	NR	rs989128-G	0.726	4E-6		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
956	chr17	48653129	48653130	rs116920450	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q21.33	CACNA1G	rs116920450-A	0.0136	4E-8		0.045842428	[0.029-0.062] unit increase	Illumina [9339358] (imputed)	N
956	chr17	48660713	48660714	rs198558	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	CHAD	rs198558-G	0.8528125	6E-6	(CHAD, 13460_4_3)	0.15525408	[0.088-0.222] unit decrease	Illumina [> 1000000] (imputed)	N
956	chr17	48666063	48666064	rs757416	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17q21.33	CACNA1G	rs757416-T	0.63	3E-25		0.69	[0.55-0.83] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
956	chr17	48666063	48666064	rs757416	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q21.33	CACNA1G	rs757416-T	0.6443	8E-25		0.7115	[0.58-0.85] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
956	chr17	48672945	48672946	rs34081637	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.33	CACNA1G	rs34081637-A	0.64743	9E-9	(-104 ms)	0.0327499	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
956	chr17	48672945	48672946	rs34081637	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.33	CACNA1G	rs34081637-A	0.64743	8E-9	(-96 ms)	0.0336008	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
956	chr17	48672945	48672946	rs34081637	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.33	CACNA1G	rs34081637-A	0.64743	4E-8	(-100 ms)	0.0324938	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
956	chr17	48672945	48672946	rs34081637	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q21.33	CACNA1G	rs34081637-A	0.64743	1E-8	(-98 ms)	0.0332232	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
956	chr17	48692081	48692082	rs117964204	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q21.33	CACNA1G	rs117964204-?	0.04	1E-9		0.28	unit decrease	Illumina [NR] (imputed)	N
957	chr17	48803520	48803520	rs35439759	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	17q21.33	NR	rs35439759-CTT	NR	5E-6		1.0886	[1.05-1.13]	Illumina [11600722] (imputed)	N
957	chr17	48816116	48816117	rs76716884	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LUC7L3	rs76716884-?	NR	3E-8	(female)	1.22567	[NR] unit decrease	Affymetrix [NR] (imputed)	N
957	chr17	48825515	48825516	rs144210385	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	17q21.33	LUC7L3	rs144210385-A	0.006	8E-8		2.85	[1.94-4.17]	Illumina [1438399] (imputed)	N
957	chr17	48849956	48849957	rs9895932	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	17q21.33	MIR8059, WFIKKN2	rs9895932-T	0.18	7E-6		0.23	unit decrease	Illumina [5600000] (imputed)	N
958	chr17	48890232	48890233	rs34837306	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q21.33	WFIKKN2	rs34837306-T	0.129227494928018	4E-6		0.0037411	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
958	chr17	48907833	48907834	rs11079936	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFIKKN2	5,363 Icelandic ancestry individuals	NA	17q21.33		rs11079936-T	0.2952	4E-175		0.530758	[0.49-0.57] unit increase	Illumina [7506463] (imputed)	N
958	chr17	48907833	48907834	rs11079936	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFIKKN2	5,361 Icelandic ancestry individuals	NA	17q21.33		rs11079936-T	0.2952	2E-140		0.476423	[0.44-0.51] unit increase	Illumina [7506463] (imputed)	N
958	chr17	48907833	48907834	rs11079936	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.33	WFIKKN2	rs11079936-C	0.669	8E-12	(Growth/differentiation factor 11/8, GDF11.MSTN.2765.4.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr17	48907833	48907834	rs11079936	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.33	WFIKKN2	rs11079936-C	0.669	7E-136	(WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2, WFIKKN2.3235.50.2)	0.6	[0.56-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr17	48915878	48915879	rs7225019	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	17q21.33	NR	rs7225019-?	NR	1E-12	(WFKN2)			Illumina [~ 4000000] (imputed)	N
958	chr17	48916158	48916159	rs7225465	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q21.33	WFIKKN2	rs7225465-A	0.682	9E-166	(WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2, WFIKKN2.13408.23.3)	0.65	[0.61-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
958	chr17	48917332	48917333	rs9675120	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA		NR	rs9675120-?	NR	5E-13	(WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2)			Illumina [514227]	N
958	chr17	48919038	48919039	rs3803884	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q21.33	TOB1, WFIKKN2, RP11-506D12.5, RPL5P33, TOB1-AS1	rs3803884-C	0.3109328	1E-40	(WAP, Kazal, immunoglobulin, Kunitz and NTR domain-containing protein 2)	0.5628	[0.48-0.64] unit increase	Affymetrix [509946]	N
958	chr17	48921218	48921219	rs12946082	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	NR	rs12946082-G	0.28046875	3E-74	(WFIKKN2, 3235_50_2)	0.46431383	[0.42-0.51] unit increase	Illumina [> 1000000] (imputed)	N
958	chr17	48921218	48921219	rs12946082	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	NR	rs12946082-G	0.28046875	2E-94	(WFIKKN2, 13408_23_3)	0.52730244	[0.48-0.58] unit increase	Illumina [> 1000000] (imputed)	N
958	chr17	48921218	48921219	rs12946082	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	NR	rs12946082-G	0.28046875	1E-8	(GDF11 MSTN, 2765_4_3)	0.15235597	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
958	chr17	48924464	48924465	rs4586493	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	17q21.33	NR	rs4586493-?	NR	8E-12	(WFKN2)	0.18	[0.13-0.23] unit increase	Illumina [4020654] (imputed)	N
958	chr17	48943591	48943592	rs146677221	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.33	NR	rs146677221-G	0.0122	4E-9	(BPNT1)	0.04757	NR unit increase	Illumina [1671387] (imputed)	N
958	chr17	48944344	48944345	rs12949115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.33		rs12949115-?	NR	1E-10				NR [~ 8900000] (imputed)	N
958	chr17	48978367	48978368	rs11652616	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	High density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	17q21.33		rs11652616-T	0.37	6E-7		1.56	[0.95-2.18] unit decrease	Illumina [19468843] (imputed)	N
958	chr17	48987433	48987434	rs9908461	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	SPAG9	rs9908461-?	NR	2E-6	(pyruvate)	1.1915364	[0.71-1.68] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr17	48990217	48990218	rs2215316	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	SPAG9	rs2215316-?	NR	9E-6	(TAG 48:1)	0.25724056	[0.14-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr17	48990217	48990218	rs2215316	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	SPAG9	rs2215316-?	NR	2E-6	(TAG 50:2)	0.2726626	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
959	chr17	49054438	49054439	rs9332407	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.33	SPAG9	rs9332407-T	0.529546	3E-12		0.0129021	[0.0093-0.0165] unit decrease	NR [13737936] (imputed)	N
959	chr17	49132457	49132458	rs143606566	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	17q21.33	SPAG9, RP11-481C4.1	rs143606566-C	0.992	1E-6		0.3414	[0.2-0.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr17	49182316	49182316	rs201931078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.33		rs201931078-GTGT	NR	5E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
960	chr17	49196869	49196870	rs1001475	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q21.33	NME1	rs1001475-?	NR	6E-6	(TAG 50:2)	0.178693	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
960	chr17	49198456	49198457	rs4427849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.33		rs4427849-?	NR	8E-13				NR [~ 8900000] (imputed)	N
960	chr17	49198456	49198457	rs4427849	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.33		rs4427849-?	NR	2E-13		0.0153981	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
960	chr17	49210819	49210820	rs1558253	25590795	Yazar S	2015-04-01	JAMA Ophthalmol	Genetic and environmental factors in conjunctival UV autofluorescence.	Conjunctival UV autofluorescence (CUVAF)	1,251 European ancestry individuals	NA	17q21.33	SPAG9, NME1	rs1558253-?		1E-7		16.78	[10.59-22.97] unit decrease	Illumina [5003381] (imputed)	N
960	chr17	49226050	49226051	rs12952884	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q21.33	NME2	rs12952884-C	0.59984375	7E-30	(NME2, 4249_64_2)	0.27902043	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
960	chr17	49230307	49230308	rs16949649	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NME2	5,363 Icelandic ancestry individuals	NA	17q21.33		rs16949649-C	0.4181	3E-45		0.261925	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
960	chr17	49243858	49243859	rs115848216	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.33	NR	rs115848216-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
960	chr17	49244746	49244747	rs4605213	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q21.33	NME2	rs4605213-C	0.34	3E-8		0.021	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
960	chr17	49246725	49246726	rs8079266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.33		rs8079266-?	NR	3E-15				NR [~ 8900000] (imputed)	N
960	chr17	49252237	49252238	rs41524846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.33	MBTD1	rs41524846-C	NR	1E-8		0.0181204	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
961	chr17	49308706	49308707	rs4794213	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q21.33	MBTD1	rs4794213-?	NR	4E-8		0.0275494	[0.018-0.037] unit decrease	Illumina [4804024] (imputed)	N
961	chr17	49383658	49383659	rs4794222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q21.33		rs4794222-G	NR	4E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
961	chr17	49383658	49383659	rs4794222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.33		rs4794222-?	NR	9E-8				NR [~ 8900000] (imputed)	N
963	chr17	49600935	49600936	rs4490044	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.33		rs4490044-?	NR	5E-9				NR [~ 8900000] (imputed)	N
963	chr17	49613784	49613785	rs9635759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q21.33		rs9635759-?	NR	1E-48				NR [~ 8900000] (imputed)	N
963	chr17	49613784	49613785	rs9635759	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	17q21.33	NR	rs9635759-G	0.5694	2E-7	(Japanese)	0.047	[0.029-0.065] year decrease	Illumina [at least 532488] (imputed)	N
963	chr17	49613784	49613785	rs9635759	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	17q21.33	NR	rs9635759-G	0.5694	2E-7	(Japanese)	0.047	[0.029-0.065] year decrease	Illumina [at least 532488] (imputed)	N
963	chr17	49613784	49613785	rs9635759	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	17q21.33	UTP18, CA10	rs9635759-?	NR	1E-10		0.03	[0.039-0.021] unit decrease	Illumina [12039492]	N
963	chr17	49613784	49613785	rs9635759	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	17q21.33	CA10	rs9635759-A	0.32	2E-24		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
963	chr17	49613784	49613785	rs9635759	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	17q21.33	CA10	rs9635759-A	0.32	7E-13		3.0	[2.22-3.78] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
963	chr17	49671309	49671310	rs11656155	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	17q21.33	NR	rs11656155-T		6E-6	(EA)	0.91	unit increase	Illumina [474792]	N
964	chr17	49749311	49749312	rs756763	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	17q21.33	CA10	rs756763-A	0.467	4E-6				Illumina [6007542] (imputed)	N
964	chr17	49749311	49749312	rs756763	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	17q21.33	CA10	rs756763-A	0.467	6E-7		0.406	[0.25-0.56] unit increase	Illumina [6007542] (imputed)	N
965	chr17	49865200	49865201	rs55824919	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	17q21.33		rs55824919-T	0.0524214	4E-8		0.0563731	[0.036-0.076] unit increase	Illumina [7980478] (imputed)	N
965	chr17	49872836	49872837	rs12453393	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.33	NR	rs12453393-?	NR	5E-6		0.0079571	[0.0046-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
965	chr17	49905598	49905599	rs1405187	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA10	5,366 Icelandic ancestry individuals	NA	17q21.33		rs1405187-A	0.1512	3E-11		0.176777	[0.12-0.23] unit increase	Illumina [7506463] (imputed)	N
965	chr17	49919010	49919011	rs7215018	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q21.33	NR	rs7215018-?	NR	5E-17				Affymetrix [NR]	N
966	chr17	49939128	49939129	rs1392935	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	17q21.33	CA10	rs1392935-G	0.91	1E-8		1.78	[1.6-1.99]	Illumina [at least 560000] (imputed)	N
967	chr17	50092200	50092201	rs55846845	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.33	CA10	rs55846845-G	0.48229999999999995	5E-11		1.0212221		Affymetrix [11880941] (imputed)	N
967	chr17	50180944	50180945	rs2970015	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q22	NR	rs2970015-C	0.731	1E-14		0.00942253	[0.007-0.0118] unit increase	NR [9732723] (imputed)	N
967	chr17	50193196	50193197	rs75919030	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q22		rs75919030-T	0.741	5E-16		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
967	chr17	50193196	50193197	rs75919030	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q22	NR	rs75919030-C	0.267	3E-13		0.020966403	[0.015-0.027] unit decrease	NR [~ 10000000] (imputed)	N
968	chr17	50204455	50204456	rs1503059	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	17q22	CA10	rs1503059-?	NR	2E-6	(Females)	1.2764871	[NR]	NR [349184]	N
968	chr17	50208365	50208366	rs6504758	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q22		rs6504758-A	0.4645	1E-10		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
968	chr17	50208783	50208784	rs2202237	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	17q22	CA10	rs2202237-T	0.5314	6E-11		0.013188412	[0.0092-0.0171] unit decrease	Affymetrix [11514654] (imputed)	N
968	chr17	50208783	50208784	rs2202237	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	CA10	rs2202237-T	0.52234375	5E-10	(CA10, 13666_222_3)	0.15640992	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
968	chr17	50213730	50213731	rs117399000	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA10	5,366 Icelandic ancestry individuals	NA	17q22		rs117399000-A	0.02405	1E-22		0.59981	[0.48-0.72] unit decrease	Illumina [7506463] (imputed)	N
968	chr17	50213730	50213731	rs117399000	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	CA10	rs117399000-A	0.037	3E-19	(Carbonic anhydrase-related protein 10, CA10.13666.222.3)	0.59	[0.45-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
968	chr17	50237146	50237147	rs16951067	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CA10	rs16951067-?	NR	5E-8	(male)	2.86705	[NR] unit increase	Affymetrix [NR] (imputed)	N
968	chr17	50243396	50243397	rs2938134	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q22	NR	rs2938134-A	0.673	3E-15		0.00933554	[0.007-0.0117] unit decrease	NR [9732723] (imputed)	N
968	chr17	50243396	50243397	rs2938134	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q22	NR	rs2938134-A	0.673	3E-10	(Conditioned on chr17:50193197)	0.01750102	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
968	chr17	50243396	50243397	rs2938134	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q22	NR	rs2938134-A	0.671	2E-8		0.0090109	[0.0059-0.0122] unit increase	NR [9732723] (imputed)	N
968	chr17	50259141	50259142	rs9889282	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q22	NR	rs9889282-C	0.3871	5E-12		1.0427529	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
968	chr17	50260365	50260366	rs34626694	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	17q22	CA10, C17orf112	rs34626694-T		3E-8		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
968	chr17	50265152	50265153	rs75709618	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	17q22	NR	rs75709618-G	NR	5E-6		0.806	NR	Illumina [at least 560000] (imputed)	N
968	chr17	50274169	50274170	rs17609255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q22	Intergenic	rs17609255-T	0.4138	2E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
968	chr17	50274169	50274170	rs17609255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs17609255-T	0.4176	8E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
968	chr17	50274169	50274170	rs17609255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs17609255-T	0.4176	3E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
968	chr17	50279080	50279080	rs71149398	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	17q22	NR	rs71149398-?		2E-12		0.015516	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
968	chr17	50293637	50293638	rs16951120	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	17q22	CA10	rs16951120-T	0.15	6E-6	(AA-glucose response)	4.49	[2.55-6.43] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
968	chr17	50294364	50294365	rs1503043	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	17q22		rs1503043-?	NR	3E-8				NR [7857346] (imputed)	N
968	chr17	50294364	50294365	rs1503043	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q22	ENSG00000252109	rs1503043-?	NR	2E-8		0.0097248	[0.0063-0.0131] unit increase	Affymetrix [805426] (imputed)	N
968	chr17	50296458	50296459	rs12601968	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17q22	NR	rs12601968-T	0.3261	1E-9		0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
968	chr17	50301551	50301552	rs11079993	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	17q22	CA10, snoZ178	rs11079993-G	NR	5E-9		0.021	[0.013-0.029] unit decrease	NR [NR] (imputed)	N
968	chr17	50301551	50301552	rs11079993	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	17q22	snoZ178	rs11079993-G	0.3825	6E-12		0.0173	[0.012-0.022] unit decrease	NR [NR]	N
968	chr17	50303446	50303447	rs9902514	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q22	CA10, LINC01982	rs9902514-G	0.851234	3E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
968	chr17	50307872	50307873	rs34796998	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	17q22	CA10	rs34796998-G	NR	1E-11		1.0394586	[1.03-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
968	chr17	50313600	50313601	rs80276257	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q22		rs80276257-T	0.01	7E-9		5.79	z score increase	Affymetrix [9061022] (imputed)	N
968	chr17	50316130	50316131	rs12453010	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	17q22	CA10	rs12453010-C	0.61	2E-9		0.03	unit decrease	NR [2324712] (imputed)	N
968	chr17	50316130	50316131	rs12453010	32246137	Meng W	2020-04-03	Hum Mol Genet	A genome-wide association study finds genetic variants associated with neck or shoulder pain in UK Biobank.	Neck pain or shoulder pain	53,994 European ancestry cases, 149,312 European ancestry controls	5,035 cases, 18,545 controls	17q22	NR	rs12453010-?	NR	2E-12		0.0095	[0.0068-0.0122] unit increase	NR [9304965] (imputed)	N
968	chr17	50317275	50317276	rs967823	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	17q22	snoZ178, RP11-429O1.1	rs967823-?	NR	2E-11			[NR]	NR [NR] (imputed)	N
968	chr17	50317275	50317276	rs967823	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	17q22	NR	rs967823-A	0.61	2E-12		0.96		NR [8546065] (imputed)	N
968	chr17	50317275	50317276	rs967823	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	17q22	NR	rs967823-A	0.61	2E-10		0.96	[NR]	NR [8546065] (imputed)	N
968	chr17	50317669	50317670	rs12951067	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q22	NA	rs12951067-T	0.4536	4E-9	(Female)	1.045	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
969	chr17	50332556	50332557	rs1825734	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	17q22	CA10	rs1825734-T	0.8385	2E-9		0.016311856	[0.011-0.022] unit increase	Affymetrix [11514654] (imputed)	N
969	chr17	50332598	50332599	rs1825733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	17q22		rs1825733-?	NR	3E-9				NR [~ 8900000] (imputed)	N
969	chr17	50333732	50333733	rs67596067	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	17q22		rs67596067-G	0.649	1E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
969	chr17	50335971	50335972	rs12600773	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	17q22	CA10	rs12600773-T	0.3539	6E-10		0.013006827	[0.0089-0.0171] unit increase	Affymetrix [11514654] (imputed)	N
969	chr17	50338247	50338248	rs74431973	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	17q22	NR	rs74431973-A	0.01261	2E-6		0.6568	[0.39-0.92] unit decrease	Illumina [10677593] (imputed)	N
969	chr17	50395538	50395539	rs10515007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs10515007-T	0.161	8E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
969	chr17	50395538	50395539	rs10515007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs10515007-T	0.161	3E-16	(MTAG)	0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
969	chr17	50395538	50395539	rs10515007	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs10515007-T	NR	5E-8		5.454	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
969	chr17	50424080	50424081	rs1576159	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q22	Intergenic	rs1576159-T	0.6298	1E-8	(MTAG)	0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
969	chr17	50429499	50429500	rs12103449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	NR	rs12103449-?	NR	1E-6		4.869	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
969	chr17	50460310	50460311	rs8074744	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17q22	C17orf112	rs8074744-A	0.615	3E-10		0.0077	[0.0053-0.0101] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
970	chr17	50508718	50508719	rs2113374	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	17q22	CA10, C17orf112	rs2113374-T	0.061	1E-6				NR [346946]	N
970	chr17	50556040	50556041	rs74592000	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	17q22	NR	rs74592000-C	NR	1E-6	(GEE model)	0.96807	[0.57-1.36] unit increase	NR [NR] (imputed)	N
970	chr17	50556679	50556680	rs11870246	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q22	Intergenic	rs11870246-A	0.1878	3E-11	(MTAG)	0.0194	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
970	chr17	50571226	50571227	rs9903973	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	17q22	NR	rs9903973-C	NR	1E-8		0.75	unit increase	Affymetrix [14661600] (imputed)	N
970	chr17	50573277	50573278	rs9890390	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	NR	rs9890390-?	NR	5E-6		4.576	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
970	chr17	50585897	50585898	rs16951547	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs16951547-T	NR	5E-10		6.21	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
970	chr17	50589623	50589624	rs350021	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	UTP18	rs350021-?	NR	2E-7	(pyridoxate)	0.19684589	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
971	chr17	50636593	50636594	rs16951622	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q22	Intergenic	rs16951622-C	0.7166	1E-8		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
971	chr17	50637813	50637814	rs16951626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q22	Intergenic	rs16951626-T	0.7164	5E-13	(MTAG)	0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
972	chr17	50726845	50726846	rs17622379	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs17622379-T	0.1853	5E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
972	chr17	50726845	50726846	rs17622379	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs17622379-T	0.1853	1E-11	(MTAG)	0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
972	chr17	50788039	50788040	rs111610257	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	17q22	C17orf112	rs111610257-T	0.993814	5E-8		0.035919	[0.023-0.049] unit decrease	NR [NR] (imputed)	N
972	chr17	50815349	50815349	rs148042118	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	17q22	NR	rs148042118-G	0.0669	3E-6		2.393	[2.03-2.76]	Illumina [10000612] (imputed)	N
972	chr17	50854418	50854419	rs4635383	28224759	Pei YF	2017-02-22	Obesity (Silver Spring)	Genomic variants at 20p11 associated with body fat mass in the European population.	Body fat mass	9,179 European ancestry individuals	NA	17q22	intergenic	rs4635383-?		4E-8				Affymetrix [6817908] (imputed)	N
973	chr17	50937589	50937590	rs12950422	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs12950422-C	NR	1E-8		5.682	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
973	chr17	50948916	50948917	rs35940164	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	17q22	NR	rs35940164-?	NR	3E-6		0.0653	[0.038-0.093] unit decrease	Illumina [~ 7800000] (imputed)	N
974	chr17	51009430	51009431	rs16952540	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs16952540-?	NR	8E-6	(TAG 56:3)	0.21479777	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51009430	51009431	rs16952540	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs16952540-?	NR	8E-6	(DAG 36:1)	0.21460274	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51009430	51009431	rs16952540	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs16952540-?	NR	4E-6	(TAG 52:1)	0.22033991	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51009430	51009431	rs16952540	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs16952540-?	NR	1E-7	(TAG 54:2)	0.25127825	[0.16-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51009430	51009431	rs16952540	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs16952540-?	NR	1E-6	(TAG 56:2)	0.24565826	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51011344	51011345	rs4794404	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	KIF2B	rs4794404-?	NR	2E-6	(TAG 48:0)	0.18207698	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
974	chr17	51092250	51092251	rs17634144	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	17q22	NR	rs17634144-?	NR	9E-8		0.3307	[0.21-0.45] unit increase	Illumina [~ 7800000] (imputed)	N
975	chr17	51189762	51189763	rs17635482	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	17q22	NR	rs17635482-A	0.75	7E-9		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
975	chr17	51237940	51237941	rs8073783	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	17q22	intergenic	rs8073783-C	0.49	8E-6	(maternal warmth)	1.76	[NR] unit decrease	Perlegen [429901]	N
976	chr17	51275573	51275574	rs76839023	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q22	Intergenic	rs76839023-G	0.975	4E-6	(AA)	0.057	unit increase	Illumina [NR] (imputed)	N
976	chr17	51285995	51285996	rs114296860	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	17q22	NR	rs114296860-?	NR	4E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
976	chr17	51364577	51364578	rs186910954	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	17q22	C17orf112	rs186910954-A	0.98419	8E-7		0.9705	[0.59-1.36] unit decrease	Affymetrix [8590397] (imputed)	N
977	chr17	51467129	51467130	rs6504822	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	17q22	NR	rs6504822-A	0.6066	7E-6		0.0165	[0.0093-0.0237] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
977	chr17	51472608	51472609	rs8073819	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q22	NR	rs8073819-?	NR	5E-8				Affymetrix [NR]	N
978	chr17	51527412	51527413	rs1502514	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	CA10	rs1502514-?	NR	6E-6	(thyroxine)	0.23017858	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
978	chr17	51616083	51616084	rs17644088	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	17q22		rs17644088-?	NR	1E-5		2.654		Illumina [5932083] (imputed)	N
978	chr17	51620517	51620518	rs62071284	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	17q22		rs62071284-?	NR	1E-5		2.654		Illumina [5932083] (imputed)	N
979	chr17	51710097	51710098	rs4453548	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	17q22	NR	rs4453548-A	0.28	1E-5		0.83	[NR]	Affymetrix [87696888] (imputed)	N
979	chr17	51722688	51722689	rs144006438	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q22	NR	rs144006438-C	0.02613	2E-8	(ALDOA)	0.2553	NR unit increase	Illumina [1671387] (imputed)	N
980	chr17	51871648	51871649	rs12451373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	17q22		rs12451373-?	NR	4E-8				NR [~ 8900000] (imputed)	N
980	chr17	51875790	51875791	rs4597364	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q22		rs4597364-T	0.672	6E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
980	chr17	51875790	51875791	rs4597364	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q22	NR	rs4597364-C	0.338	2E-8		0.00665208	[0.0043-0.009] unit decrease	NR [9732723] (imputed)	N
980	chr17	51891404	51891405	rs7216173	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	17q22	NR	rs7216173-A	0.2139	1E-8		1.036	[1.02-1.05]	NR [8968716] (imputed)	N
981	chr17	51917843	51917844	rs34542489	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q22	KIF2B	rs34542489-A	0.590246	3E-8		0.00777978	[0.005-0.0105] unit increase	Affymetrix [12370749]	N
981	chr17	51945446	51945447	rs8079585	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	17q22	NR	rs8079585-G		8E-6				Illumina [458525]	N
981	chr17	51992002	51992003	rs188840013	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q22	Intergenic	rs188840013-C	0.998	3E-6	(AA)	1.385	NR unit increase	Illumina [NR] (imputed)	N
981	chr17	52030914	52030915	rs72842707	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	17q22		rs72842707-C	NR	1E-6		1.8987	[1.15-2.65] unit increase	Illumina [NR] (imputed)	N
982	chr17	52061465	52061466	rs117147772	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	17q22	KIF2B, TOM1L1	rs117147772-?	NR	2E-8		1.137	[1.087-1.190]	Illumina [13729857] (imputed)	N
982	chr17	52073632	52073633	rs12450129	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs12450129-T	0.4878	2E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
982	chr17	52077385	52077386	rs12952191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs12952191-T	0.4895	7E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
982	chr17	52077385	52077386	rs12952191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs12952191-T	0.4895	5E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
982	chr17	52140804	52140805	rs569511541	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q22	KIF2B	rs569511541-G	2.0E-4	2E-8		7.63	[3.78-15.4]	Affymetrix, Illumina [~ 27000000] (imputed)	N
983	chr17	52178044	52178045	rs9891228	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	17q22	intergenic	rs9891228-T	NR	6E-7	(adjusted for clinical variables)			Illumina [up to 3935887] (imputed)	N
983	chr17	52195026	52195027	rs8069335	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	TOM1L1	rs8069335-?	NR	5E-6	(PC 36:3)	0.32012174	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
983	chr17	52235346	52235347	rs10401037	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	17q22	KIF2B, TOM1L1	rs10401037-C	NR	4E-6		4.625	NR z score increase	Illumina [7839440] (imputed)	N
984	chr17	52306821	52306822	rs72828794	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	17q22		rs72828794-T	NR	6E-6		2.7808	[1.61-3.95] unit increase	Illumina [NR] (imputed)	N
984	chr17	52335201	52335202	rs79851935	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	17q22		rs79851935-T	NR	2E-6	(GLM)	5.7487	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
985	chr17	52493970	52493971	rs115573116	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	17q22	TOM1L1	rs115573116-T	0.002	2E-7		0.756	[0.47-1.04] unit increase	Illumina [32241096] (imputed)	N
985	chr17	52548124	52548125	rs6504909	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q22	TOM1L1	rs6504909-G	0.166	3E-6	(Urinary free dopamine )	0.05	[NR] nmol/d increase	Illumina [899892]	N
987	chr17	52730917	52730918	rs78171803	32650023	Gabryszewski SJ	2020-07-07	J Allergy Clin Immunol	Unsupervised Modeling and Genome-Wide Association Identify Novel Features of Allergic March Trajectories.	Allergic march (atopic dermatitis to allergic rhinitis)	110 African American child female cases, 496 African American child female controls	74 African American child female cases, 606 African American child female controls	17q22	intergenic	rs78171803-?	NR	4E-8				Illumina [52122499] (imputed)	N
987	chr17	52733677	52733678	rs117683430	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	17q22		rs117683430-?	NR	2E-7		2.39	[1.78-3.21]	Affymetrix, Illumina [29826485] (imputed)	N
987	chr17	52802576	52802577	rs12600875	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	COX11	rs12600875-?	NR	7E-6	(TAG 60:12)	0.3181042	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
988	chr17	52926400	52926401	rs17744603	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q22	NR	rs17744603-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
988	chr17	52926400	52926401	rs17744603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q22		rs17744603-?	NR	7E-9				NR [~ 8900000] (imputed)	N
988	chr17	52930420	52930421	rs2958950	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	17q22	NR	rs2958950-A	NR	2E-6	(African)	0.3066	[0.18-0.43] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
988	chr17	52933788	52933789	rs7504104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q22		rs7504104-G	NR	8E-9		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
988	chr17	52937055	52937056	rs2332306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q22		rs2332306-G	NR	2E-9		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
989	chr17	52984476	52984477	rs12936080	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	17q22	TOM1L1	rs12936080-T	0.01	4E-7	(Hispanic/Latino)	1.1	[0.69-1.51] unit decrease	Illumina [up to 13042663] (imputed)	N
989	chr17	52986483	52986484	rs12939005	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Large artery stroke	1,877 European ancestry cases, 12,285 European ancestry controls	1,130 European ancestry cases, 17,970 European ancestry controls	17q22		rs12939005-?	NR	3E-6		4.693	z score increase	Affymetrix, Illumina [NR] (imputed)	N
989	chr17	52999842	52999843	rs184812087	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	17q22	Intergenic	rs184812087-A		3E-6		0.076	[0.044-0.108] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
989	chr17	53048342	53048342	rs35999340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q22		rs35999340-TA	NR	6E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
989	chr17	53056470	53056471	rs6504950	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	17q22	NR	rs6504950-G	0.72	8E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
989	chr17	53056470	53056471	rs6504950	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	17q22	NR	rs6504950-G	0.72	5E-12		1.0638298	[1.04-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
989	chr17	53056470	53056471	rs6504950	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	17q22	COX11	rs6504950-G	0.72	2E-13		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
989	chr17	53056470	53056471	rs6504950	19330027	Ahmed S	2009-05-01	Nat Genet	Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	38,430 European ancestry cases, 2,572 East Asian ancestry cases, 41,926 European ancestry controls, 2,059 East Asian ancestry controls	17q22	COX11	rs6504950-G	0.73	1E-8		1.05	[1.03-1.09]	Illumina, Perlegen [up to 206586]	N
989	chr17	53060968	53060968	rs112214646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q22	STXBP4	rs112214646-ATTTCT	0.72175	5E-15		0.019855028	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
989	chr17	53076246	53076247	rs77406149	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	17q22	STXBP4	rs77406149-G	0.2	3E-10		0.035	NR unit increase	Illumina [9591901] (imputed)	N
989	chr17	53083039	53083040	rs79657575	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	17q22	STXBP4	rs79657575-G	0.01	5E-7	(Hispanic/Latino)	1.1	[0.67-1.53] unit decrease	Illumina [up to 13042663] (imputed)	N
990	chr17	53096178	53096179	rs113592246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q22	NR	rs113592246-A	0.222695	3E-11		0.014746	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
990	chr17	53102366	53102367	rs78781855	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	17q22	STXBP4	rs78781855-G	0.22	6E-9		0.475	[0.32-0.63] unit decrease	Affymetrix, Illumina [~ 7400000] (imputed)	N
990	chr17	53103597	53103598	rs7211469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q22		rs7211469-?	NR	2E-13				NR [~ 8900000] (imputed)	N
990	chr17	53109175	53109176	rs62078811	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	17q22	NR	rs62078811-A	0.2183	1E-8		0.3693	[0.24-0.5] unit decrease	Illumina [5932107] (imputed)	N
990	chr17	53128909	53128910	rs16955527	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q22	NR	rs16955527-?	NR	1E-7				Affymetrix [NR]	N
990	chr17	53147724	53147725	rs60940178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs60940178-A	0.220185	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
990	chr17	53162485	53162486	rs35505893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs35505893-A	0.216059	2E-14				Affymetrix, Illumina [24332387] (imputed)	N
990	chr17	53162485	53162486	rs35505893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q22	NR	rs35505893-A	0.219957	2E-14		0.0178	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
990	chr17	53174726	53174727	rs17817628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q22		rs17817628-?	NR	2E-17				NR [~ 8900000] (imputed)	N
990	chr17	53189355	53189356	rs2062346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs2062346-?	NR	8E-8				NR [~ 8900000] (imputed)	N
990	chr17	53209773	53209774	rs2787486	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	17q22		rs2787486-A	NR	2E-34		1.08	[1.07-1.09]	Affymetrix, Illumina [NR] (imputed)	N
990	chr17	53209773	53209774	rs2787486	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q22	intergenic	rs2787486-A	0.7	6E-29	(EA)	1.0752687	[1.06-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
990	chr17	53212572	53212573	rs2628317	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	17q22	STXBP4	rs2628317-A	0.72985	4E-16		0.0582	[0.044-0.072] unit increase	Illumina [NR]	N
991	chr17	53228354	53228355	rs12162133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q22		rs12162133-T	NR	3E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
991	chr17	53230721	53230722	rs244293	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	17q22	STXBP4	rs244293-G	0.6	4E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
991	chr17	53242390	53242391	rs72834846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q22	CTC-462L7.1	rs72834846-T	0.203438	5E-15		0.021477135	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
991	chr17	53242390	53242391	rs72834846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q22	NR	rs72834846-T	0.204797	2E-13		0.017654	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
991	chr17	53242390	53242391	rs72834846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q22	CTC-462L7.1	rs72834846-T	0.2033	3E-9		0.02629934	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
991	chr17	53245732	53245733	rs11651211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q22		rs11651211-C	NR	2E-12		0.0144	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
991	chr17	53261033	53261034	rs62079870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q22		rs62079870-G	0.219655	1E-13		0.019954575	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
991	chr17	53270819	53270820	rs9904768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q22		rs9904768-G	NR	6E-10		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
991	chr17	53270819	53270820	rs9904768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q22		rs9904768-G	0.21994	3E-9		0.016081331	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr17	53270819	53270820	rs9904768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q22		rs9904768-G	0.220078	1E-12		0.019348053	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
991	chr17	53270819	53270820	rs9904768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q22		rs9904768-G	0.219956	3E-12		0.0162716	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
991	chr17	53270819	53270820	rs9904768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q22		rs9904768-?	NR	5E-13				NR [~ 8900000] (imputed)	N
991	chr17	53294771	53294772	rs79692461	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	17q22	HLF, STXBP4, MMD, COX11	rs79692461-G	NR	4E-6	(sleep latency, weekdays)	0.5106	[0.29-0.73] unit increase	Affymetrix [7141204] (imputed)	N
991	chr17	53323471	53323472	rs56056033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	17q22	HLF	rs56056033-T	0.2612	6E-6		0.034	[0.019-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
991	chr17	53323471	53323472	rs56056033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q22	HLF	rs56056033-T	0.2615	7E-7		0.039	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
991	chr17	53323471	53323472	rs56056033	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q22	HLF	rs56056033-T	0.2615	7E-7		0.039	[0.024-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
991	chr17	53335827	53335828	rs1477143	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q22	HLF	rs1477143-T	0.259	4E-7		1.06812	[1.04-1.09]	NR [9372253] (imputed)	N
992	chr17	53349171	53349172	rs11650482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q22	NR	rs11650482-A	NR	2E-11		0.0217	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
992	chr17	53349171	53349172	rs11650482	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	17q22	NR	rs11650482-A	0.1651	3E-6		0.1866	[0.11-0.26] unit decrease	Illumina [10677593] (imputed)	N
992	chr17	53356125	53356126	rs4617927	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	17q22	HLF	rs4617927-?		4E-6				Affymetrix [up to 644046]	N
992	chr17	53363837	53363838	rs7223165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q22	HLF	rs7223165-T	0.296751	3E-9		0.014582361	[0.0098-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr17	53364787	53364788	rs7224610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q22		rs7224610-A	NR	7E-44		0.0265	[0.023-0.03] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
992	chr17	53364787	53364788	rs7224610	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q22	NR	rs7224610-A	0.6	5E-52		0.0284	[0.025-0.032] unit decrease	NR [NR]	N
992	chr17	53364787	53364788	rs7224610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q22	HLF	rs7224610-A	0.601515	2E-9		0.013701142	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr17	53364787	53364788	rs7224610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q22	HLF	rs7224610-A	0.601496	7E-11		0.01482903	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr17	53364787	53364788	rs7224610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q22	HLF	rs7224610-A	0.601505	3E-9		0.013567808	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr17	53364787	53364788	rs7224610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q22	NR	rs7224610-A	0.599281	1E-10		0.012288	[0.0086-0.016] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
992	chr17	53364787	53364788	rs7224610	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	17q22	HLF	rs7224610-C		2E-12		0.037	[0.027-0.047] mg/dl increase	NR [NR] (imputed)	N
992	chr17	53364787	53364788	rs7224610	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	17q22	HLF	rs7224610-A	0.592	3E-12	(EA)	0.027142856	[0.019-0.035] unit decrease	Illumina [1986983] (imputed)	N
992	chr17	53364787	53364788	rs7224610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q22		rs7224610-?	NR	3E-10				NR [~ 8900000] (imputed)	N
992	chr17	53364787	53364788	rs7224610	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q22	HLF	rs7224610-A	0.58	5E-17		0.042	[0.032-0.052] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
992	chr17	53365171	53365172	rs3794748	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q22	HLF	rs3794748-A	0.3515	9E-23		0.0334	[0.027-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
992	chr17	53365171	53365172	rs3794748	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	17q22	HLF	rs3794748-A	0.4088	1E-21		0.037619	[0.03-0.045] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
992	chr17	53365171	53365172	rs3794748	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	17q22	NR	rs3794748-A	0.663	2E-6	(men)	0.026	[0.015-0.037] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
992	chr17	53365171	53365172	rs3794748	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	17q22	NR	rs3794748-A	0.6448	2E-13	(women)	0.0361	[0.026-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
992	chr17	53367299	53367300	rs884303	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	17q22	HLF	rs884303-A	NR	6E-10		0.921	[0.897-0.945]	Illumina [3742365] (imputed)	N
992	chr17	53367463	53367464	rs884301	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q22	HLF	rs884301-T	0.374	2E-7		1.06131	[1.04-1.08]	NR [9372253] (imputed)	N
992	chr17	53373549	53373550	rs11079159	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q22	NR	rs11079159-?	NR	6E-7	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
992	chr17	53381795	53381796	rs4793788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	17q22	NR	rs4793788-A	NR	1E-37		0.0317	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
992	chr17	53381795	53381796	rs4793788	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q22	NR	rs4793788-C	0.363867	4E-10		0.0158694	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
992	chr17	53382828	53382829	rs3794752	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q22	HLF	rs3794752-T	0.719362	2E-9		0.0128343	[0.0086-0.017] unit decrease	Affymetrix [NR] (imputed)	N
992	chr17	53400109	53400110	rs12940636	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	High density lipoprotein cholesterol levels	17,641 African American individuals, 22,830 Hispanics ancestry individuals, 2,378 East Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals, 22,887 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals			rs12940636-?	NR	2E-10		6.3	z-score increase increase	Affymetrix, Illumina [NR] (imputed)	N
992	chr17	53400109	53400110	rs12940636	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	17q22		rs12940636-C	NR	2E-7		0.0043061	[0.0027-0.0059] years increase	NR [7400000] (imputed)	N
992	chr17	53400109	53400110	rs12940636	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17q22		rs12940636-C	NR	4E-9		0.020139048	[0.013-0.027] years increase	NR [7400000] (imputed)	N
992	chr17	53404724	53404725	rs11079160	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	17q22	HLF	rs11079160-T	0.17	6E-6		0.09	[0.051-0.129] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
992	chr17	53412593	53412594	rs17817995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q22		rs17817995-?	NR	8E-10				NR [~ 8900000] (imputed)	N
992	chr17	53467615	53467616	rs35775492	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q22	NR	rs35775492-?	NR	1E-6		0.0084988	[0.0051-0.0119] unit increase	Affymetrix [805426] (imputed)	N
993	chr17	53477585	53477586	rs11079166	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q22	MMD	rs11079166-T	0.579875	6E-10		0.0115785	[0.0079-0.0153] unit decrease	NR [13737936] (imputed)	N
993	chr17	53487663	53487664	rs11079173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	17q22		rs11079173-G	NR	1E-31		0.0812	[0.068-0.095] unit increase	Illumina [6720657] (imputed)	N
993	chr17	53487663	53487664	rs11079173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q22		rs11079173-?	NR	3E-11				NR [~ 8900000] (imputed)	N
993	chr17	53489598	53489599	rs7213162	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	17q22		rs7213162-T	NR	2E-10		0.0652	[0.045-0.085] unit increase	Illumina [6720657] (imputed)	N
993	chr17	53519843	53519844	rs11653011	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q22	MMD	rs11653011-G	0.473	3E-6	(Urinary free dopamine: creatinine)	0.04	[NR] unit increase	Illumina [899892]	N
993	chr17	53548241	53548242	rs12943077	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	HLF	rs12943077-?	NR	4E-7	(ornithine)	0.17202415	[0.11-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
993	chr17	53573451	53573452	rs7226241	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	17q22		rs7226241-A	NR	1E-6		0.05233	unit increase	Illumina [2550710] (imputed)	N
994	chr17	53646984	53646985	rs9897366	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	17q22		rs9897366-G	0.1198	2E-6		1.402	[1.218-1.613]	Affymetrix [7975321] (imputed)	N
994	chr17	53660067	53660067	rs56196209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q22	CTD-2033D24.2	rs56196209-ACATC	NR	5E-9		0.0199003	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
994	chr17	53715449	53715450	rs9907033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q22		rs9907033-?	NR	2E-10				NR [~ 8900000] (imputed)	N
994	chr17	53718447	53718448	rs919134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q22	TMEM100	rs919134-A	NR	3E-9		0.0214626	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
994	chr17	53718447	53718448	rs919134	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q22	TMEM100	rs919134-A	NR	1E-9		0.0218504	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
994	chr17	53731578	53731579	rs8074638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q22	NR	rs8074638-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
994	chr17	53731578	53731579	rs8074638	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q22	NR	rs8074638-A	0.191	2E-11		0.0157	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
995	chr17	53739607	53739608	rs183716729	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	17q22	TMEM100	rs183716729-A	3.0E-4	1E-26		8.2427	[6.73-9.76] mmHg increase	Affymetrix [NR] (imputed)	N
995	chr17	53757786	53757787	rs1549519	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	17q22	TMEM100, PCTP	rs1549519-T	0.20	6E-9		0.048	[0.024-0.072] unit decrease	Affymetrix [855034]	N
995	chr17	53769034	53769035	rs117202297	27400856	Legge SE	2016-07-12	Mol Psychiatry	Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	48 European ancestry cases, 18 European ancestry extreme cases, 5,583 European ancestry controls	161 cases, 249 clozapine-exposed controls, 947 unexposed controls	17q22	TMEM100	rs117202297-T	0.0122	5E-6		4.9702		Illumina [7559010] (imputed)	N
996	chr17	53920520	53920521	rs9303375	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q22	AC090618.1	rs9303375-A	0.0597	1E-13		0.0304	[0.022-0.038] unit increase	Affymetrix [18391927] (imputed)	N
997	chr17	54123972	54123973	rs2060070	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q22	NR	rs2060070-G	0.76230421875	9E-7	(IGP36)	0.1789	[0.11-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
997	chr17	54123972	54123973	rs2060070	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q22	NR	rs2060070-G	0.761979803659081	2E-6	(IGP37)	0.1745	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
997	chr17	54123972	54123973	rs2060070	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q22	NR	rs2060070-G	0.761965887650468	2E-6	(IGP38)	0.1748	[0.1-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
998	chr17	54145390	54145391	rs17819679	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	PCTP	rs17819679-?	NR	6E-6	(suberic acid)	0.4846088	[0.27-0.69] unit decrease	Affymetrix [at least 2500000] (imputed)	N
998	chr17	54152703	54152704	rs78564882	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	17q22	Intergenic	rs78564882-T	0.0276	5E-6		1.4742	[0.84-2.1] unit decrease	Illumina [9520174] (imputed)	N
998	chr17	54173598	54173599	rs9898091	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q22		rs9898091-T	0.9604	7E-12		0.038	[0.026-0.05] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
998	chr17	54173732	54173733	rs72829706	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q22	PCTP, ANKFN1	rs72829706-A	0.96	1E-10		1.057915		Affymetrix [11880941] (imputed)	N
998	chr17	54187684	54187685	rs1367693	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q22		rs1367693-?	NR	2E-31		0.0247068	[0.021-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
998	chr17	54192522	54192523	rs1431318	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	intergenic	rs1431318-?	NR	9E-7		1.41	[1.23-1.62]	Illumina [948142]	N
998	chr17	54195452	54195453	rs28519449	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q22	ANKFN1	rs28519449-T	0.4043	1E-18		0.0209	[0.016-0.026] unit increase	Affymetrix [19819130] (imputed)	N
998	chr17	54195452	54195453	rs28519449	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q22	ANKFN1	rs28519449-T	0.4043	4E-18		0.0205	[0.016-0.025] unit increase	Affymetrix [19819130] (imputed)	N
998	chr17	54198296	54198297	rs17819973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q22		rs17819973-?	NR	8E-20				NR [~ 8900000] (imputed)	N
998	chr17	54203359	54203360	rs8065311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs8065311-?	NR	8E-15				NR [~ 8900000] (imputed)	N
998	chr17	54203359	54203360	rs8065311	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	intergenic	rs8065311-?	NR	2E-6		1.43	[1.23-1.66]	Illumina [948142]	N
998	chr17	54203654	54203655	rs56335503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q22		rs56335503-A	0.526605	4E-13		0.0146206	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
998	chr17	54203654	54203655	rs56335503	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q22	PCTP, ANKFN1	rs56335503-?	NR	5E-11		0.018742183	[0.013-0.024] unit decrease	Illumina [27896057] (imputed)	N
998	chr17	54216506	54216507	rs72829750	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q22	ANKFN1	rs72829750-T	0.4001	2E-19		0.0174	[0.014-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
998	chr17	54233701	54233702	rs72829754	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q22		rs72829754-?	NR	1E-41		0.029278	[0.025-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
998	chr17	54233701	54233702	rs72829754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q22	ANKFN1	rs72829754-G	0.603942	2E-13	(men)	0.0380293	[0.028-0.048] unit decrease	NR [17166351] (imputed)	N
998	chr17	54233701	54233702	rs72829754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q22	ANKFN1	rs72829754-G	0.603181	1E-24		0.0353308	[0.029-0.042] unit decrease	NR [17166351] (imputed)	N
998	chr17	54233701	54233702	rs72829754	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q22	ANKFN1	rs72829754-G	0.602517	1E-10	(women)	0.0310225	[0.022-0.04] unit decrease	NR [17166351] (imputed)	N
999	chr17	54273597	54273598	rs60891864	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q22	ANKFN1	rs60891864-C	0.597921	2E-56		0.0301064	[0.026-0.034] unit decrease	NR [13737936] (imputed)	N
999	chr17	54273597	54273598	rs60891864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q22		rs60891864-?	NR	3E-53				NR [~ 8900000] (imputed)	N
999	chr17	54278714	54278715	rs1019238	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	17q22	ANKFN1	rs1019238-?	NR	6E-7		1.45	[1.25-1.68]	Illumina [948142]	N
999	chr17	54304716	54304717	rs7218433	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	3,566 European ancestry individuals	4,680 European ancestry individuals	17q22		rs7218433-G	0.242007852	1E-21				Illumina [7417619] (imputed)	N
999	chr17	54325271	54325272	rs117155606	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	17q22	ANKFN1	rs117155606-T	0.01	1E-6		5.53	[2.78-11.02]	Affymetrix, Illumina [up to 7729175] (imputed)	N
999	chr17	54374610	54374611	rs7211966	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q22	NA	rs7211966-T	0.0273	4E-6		0.0277	[0.016-0.039] unit decrease	NR [~ 27400000] (imputed)	N
1000	chr17	54401989	54401990	rs12450830	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q22		rs12450830-G	0.48	5E-10		6.22	z score increase	Affymetrix [9061022] (imputed)	N
1000	chr17	54401989	54401990	rs12450830	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q22	NR	rs12450830-G	0.4902	5E-10				NR [9056863] (imputed)	N
1000	chr17	54401989	54401990	rs12450830	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q22	NR	rs12450830-G	0.4902	6E-9				NR [9056863] (imputed)	N
1000	chr17	54402274	54402275	rs4793810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q22		rs4793810-A	0.48	1E-12		7.12	z score increase	Affymetrix [9061022] (imputed)	N
1000	chr17	54402274	54402275	rs4793810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q22		rs4793810-A	0.48	6E-11		6.54	z score increase	Affymetrix [9061022] (imputed)	N
1000	chr17	54430154	54430155	rs12449568	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	17q22	ANKFN1	rs12449568-C	0.41	4E-6		0.14	[0.081-0.199] unit increase	Illumina [6380737] (imputed)	N
1000	chr17	54430154	54430155	rs12449568	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	17q22	ANKFN1	rs12449568-C	0.47	2E-6		0.25	[0.15-0.35] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
1000	chr17	54456643	54456644	rs60229149	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	17q22	ANKFN1	rs60229149-?	NR	4E-6		0.506	[0.23-0.78] unit decrease	Illumina [at least 13000000] (imputed)	N
1000	chr17	54480477	54480478	rs11870594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q22		rs11870594-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1000	chr17	54499578	54499579	rs6505057	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q22		rs6505057-?	NR	3E-10		0.0141682	[0.0097-0.0186] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr17	54506786	54506787	rs12103566	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	NOG	rs12103566-?	NR	3E-6	(NG monomethyl arginine)	0.29899794	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1000	chr17	54510894	54510895	rs7211043	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q22	ANKFN1	rs7211043-A	0.297019	5E-16		0.016589	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1001	chr17	54585749	54585750	rs73991560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs73991560-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1001	chr17	54605468	54605469	rs73991579	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q22	intergenic	rs73991579-A	0.9133	6E-14		0.0241	[0.018-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
1001	chr17	54605676	54605677	rs78245495	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q22	ANKFN1, NOG	rs78245495-?	NR	1E-8		0.044836644	[0.029-0.06] unit increase	Illumina [27896057] (imputed)	N
1001	chr17	54611290	54611291	rs17760268	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	17q22	ANKFN1, NOG	rs17760268-C		4E-6				Illumina [944512] (imputed)	N
1001	chr17	54615616	54615617	rs17760296	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	17q22	NOG	rs17760296-G	0.16	7E-6		1.5	[1.32-1.69]	Illumina [521288]	N
1001	chr17	54634682	54634683	rs77370764	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	17q22	intergenic	rs77370764-?	NR	7E-6		0.154	[0.078-0.23] unit decrease	Illumina [at least 13000000] (imputed)	N
1001	chr17	54638947	54638948	rs8072843	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	17q22	intergenic	rs8072843-A	0.002	6E-6	(Continuous PC20)	0.511	[NR] unit decrease	Illumina [546355]	N
1001	chr17	54640365	54640366	rs543919231	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17q22	NR	rs543919231-?	NR	1E-6		1.0166	[0.6-1.43] unit increase	NR [13958389] (imputed)	N
1002	chr17	54707916	54707917	rs12939240	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	17q22	ANKNF1, DGKE	rs12939240-T	0.6920000000000001	4E-6		1.1227125	1.07064644-1.17731043	Affymetrix, Illumina [7701827] (imputed)	N
1002	chr17	54715142	54715143	rs1963456	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q22	NR	rs1963456-?	NR	3E-7		0.108084	[0.067-0.149] unit decrease	NR [13958389] (imputed)	N
1002	chr17	54715142	54715143	rs1963456	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q22	NR	rs1963456-T		2E-19		0.11	[0.09-0.13] unit increase	NR [NR]	N
1002	chr17	54734642	54734643	rs12451582	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q22	NOG, C17orf67	rs12451582-A	0.3687	2E-12		7.02	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1002	chr17	54735306	54735307	rs8075811	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q22	NOG, DGKE, MSI2, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, SEP4, TEX14, PPM1E, TRIM37, SKA2, GDPD1, YPEL2	rs8075811-?		7E-42				Affymetrix, Illumina [NR] (imputed)	N
1002	chr17	54738256	54738257	rs714832	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17q22	NR	rs714832-A	0.3481	4E-8		0.0402	[0.026-0.055] unit increase	Illumina [~ 10600000] (imputed)	N
1002	chr17	54745338	54745339	rs11868596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q22	NOG	rs11868596-C	NR	3E-8		0.0195159	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1002	chr17	54760613	54760614	rs12951993	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q22	NR	rs12951993-A	0.420472	1E-9		0.019133	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1002	chr17	54762164	54762165	rs227745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs227745-?	NR	2E-49				NR [~ 8900000] (imputed)	N
1002	chr17	54766217	54766218	rs4794658	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	17q22		rs4794658-T	0.36	6E-8				Illumina [6761961] (imputed)	N
1002	chr17	54769173	54769174	rs227733	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q22	NOG	rs227733-A	NR	3E-8		0.0173075	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1002	chr17	54769173	54769174	rs227733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q22	NR	rs227733-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1002	chr17	54769173	54769174	rs227733	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q22	NR	rs227733-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1002	chr17	54769173	54769174	rs227733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q22		rs227733-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1002	chr17	54769889	54769890	rs227732	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	17q22		rs227732-T	0.2962	2E-9		1.0644945	[1.043015852-1.08641537]	Affymetrix, Illumina [NR] (imputed)	N
1002	chr17	54769889	54769890	rs227732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q22	NOG	rs227732-T	NR	4E-11		0.0223494	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1002	chr17	54773237	54773238	rs227731	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	17q22	NR	rs227731-?	NR	1E-8		0.2687	[0.18-0.36] unit decrease	NR [7618724] (imputed)	N
1002	chr17	54773237	54773238	rs227731	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q22	C17orf67	rs227731-T	0.5672	7E-13		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1002	chr17	54773237	54773238	rs227731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q22		rs227731-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1002	chr17	54773237	54773238	rs227731	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	17q22		rs227731-?		5E-7				Illumina [NR]	N
1002	chr17	54773237	54773238	rs227731	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	17q22	NOG, C17orf67	rs227731-C	0.32	9E-9		1.19		Illumina [803202]	N
1002	chr17	54773237	54773238	rs227731	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17q22	NOG	rs227731-?	NR	2E-9		1.24	[1.12-1.38] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1002	chr17	54773237	54773238	rs227731	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	17q22	NR	rs227731-C	NR	2E-8	(Meta-All, NSCL/P)	1.228	[1.078-1.400]	NR [497084]	N
1002	chr17	54773237	54773238	rs227731	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	17q22	NOG	rs227731-C	0.42	1E-8		1.38	[1.21-1.56]	Illumina [521288]	N
1002	chr17	54776854	54776855	rs227728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q22		rs227728-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1002	chr17	54776954	54776955	rs227727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q22		rs227727-T	NR	3E-17		0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1002	chr17	54776954	54776955	rs227727	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 38)	4,680 European ancestry individuals	3,566 European ancestry individuals	17q22		rs227727-T	0.436786655	1E-16				Illumina [7417619] (imputed)	N
1002	chr17	54776954	54776955	rs227727	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	17q22	NR	rs227727-A	NR	3E-9		0.00817	[0.0055-0.0108] unit decrease	NR [11010159] (imputed)	N
1002	chr17	54776954	54776955	rs227727	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17q22	NR	rs227727-A	NR	1E-8		0.0059724	[0.0039-0.008] unit decrease	NR [11010159] (imputed)	N
1002	chr17	54776954	54776955	rs227727	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17q22	NR	rs227727-A	NR	2E-9	(adjusted for BMI)	0.00617	[0.0041-0.0082] unit decrease	NR [11010159] (imputed)	N
1002	chr17	54777584	54777585	rs227726	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	17q22	Intergenic	rs227726-T	0.3374	2E-7	(Lower facial depth)	1.242	[0.7-1.79] unit decrease	Illumina [34985077] (imputed)	N
1002	chr17	54778643	54778644	rs60260736	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	17q22	NR	rs60260736-A	0.01742	6E-7		0.5718	[0.35-0.8] unit increase	Illumina [34985077] (imputed)	N
1002	chr17	54778816	54778817	rs227724	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference (BMI adjusted)	8,732 European and African American ancestry men	1,554 European ancestry men	17q22	NR	rs227724-?	NR	4E-10		0.1985	NR unit decrease	Affymetrix, Illumina [7789444] (imputed)	N
1002	chr17	54778816	54778817	rs227724	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference (BMI adjusted)	13,625 European ancestry individuals, 1,465 African American individuals	3,297 European ancestry individuals	17q22	NR	rs227724-?	NR	1E-8		0.1367	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
1002	chr17	54778816	54778817	rs227724	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q22	NOG	rs227724-A	0.65	7E-15		0.03	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1002	chr17	54778903	54778904	rs227723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q22	C17orf67	rs227723-T	NR	1E-10		0.0215293	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
1002	chr17	54787721	54787722	rs227702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q22	NR	rs227702-G	NR	2E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr17	54795134	54795135	rs227669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q22	C17orf67	rs227669-C	NR	4E-8		0.0189128	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
1003	chr17	54827359	54827360	rs17760525	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	17q22	intergenic	rs17760525-A	0.23	1E-6	(female)	5.56	z score increase	Illumina [6380737] (imputed)	N
1003	chr17	54839651	54839652	rs1401795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q22		rs1401795-G	NR	4E-46		0.0192	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1003	chr17	54839651	54839652	rs1401795	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q22	NR	rs1401795-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1003	chr17	54839651	54839652	rs1401795	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q22	NOG, C17orf67	rs1401795-?	NR	4E-17		0.027395504	[0.021-0.034] unit decrease	Illumina [27896057] (imputed)	N
1003	chr17	54839651	54839652	rs1401795	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q22	C17orf67	rs1401795-A	0.508	1E-23		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1003	chr17	54839758	54839759	rs1401796	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q22	NOG	rs1401796-?	NR	2E-8	(Conditioned on rs227724)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1003	chr17	54841960	54841961	rs9908159	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	17q22		rs9908159-T	0.509	4E-11		1.0409149	[1.02854401-1.053434502]	Affymetrix, Illumina [NR] (imputed)	N
1003	chr17	54841960	54841961	rs9908159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q22	C17orf67	rs9908159-C	NR	5E-11		0.0202388	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1003	chr17	54842554	54842555	rs963292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs963292-?	NR	5E-68				NR [~ 8900000] (imputed)	N
1003	chr17	54845553	54845554	rs73323006	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	17q22	C17orf67, DGKE	rs73323006-?	NR	8E-6		3.19		Illumina [6778521] (imputed)	N
1003	chr17	54849223	54849224	rs8073455	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q22	intergenic	rs8073455-T	0.4941	2E-11		0.0127	[0.009-0.0164] unit decrease	Affymetrix [18391927] (imputed)	N
1003	chr17	54850328	54850329	rs4794665	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17q22	C17orf67	rs4794665-A	0.17	6E-6		0.019	[0.0053-0.0327] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1003	chr17	54850328	54850329	rs4794665	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q22	COIL, RISK, NOG, DGKE, TRIM25	rs4794665-A	0.48	1E-7		3.6	[2.23-4.97] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1003	chr17	54856139	54856140	rs79084672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	NOG	rs79084672-G	0.012	9E-27	(Noggin, NOG.5846.24.3)	1.24	[1-1.48] unit increase	Affymetrix [10572788] (imputed)	N
1003	chr17	54856751	54856752	rs34018425	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	17q22		rs34018425-C	0.2079	2E-6		0.112562	[0.067-0.159] unit increase	Illumina [7506463] (imputed)	N
1003	chr17	54865360	54865361	rs35250090	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	17q22		rs35250090-G	0.3219	1E-40		0.267046	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
1003	chr17	54868624	54868625	rs7224488	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	17q22	NOG	rs7224488-?		2E-6				Illumina [859311]	N
1003	chr17	54880992	54880993	rs3853824	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q22	C17orf67, DGKE	rs3853824-?		4E-6				Illumina [9560910] (imputed)	N
1003	chr17	54880992	54880993	rs3853824	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q22	C17orf67	rs3853824-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
1003	chr17	54880992	54880993	rs3853824	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q22	NR	rs3853824-G	0.64	8E-10	(EA)	1.0661255		Affymetrix, Illumina [~ 9000000] (imputed)	N
1003	chr17	54880992	54880993	rs3853824	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q22	intergenic	rs3853824-G	0.64	1E-10	(EA)	1.0847627	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1003	chr17	54905493	54905494	rs74929176	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q22	C17orf67	rs74929176-C	0.773047	4E-8		0.00904667	[0.0058-0.0123] unit increase	Affymetrix [12370749]	N
1003	chr17	54912338	54912339	rs1048159	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	17q22		rs1048159-A	0.1272	1E-39		0.368333	[0.31-0.42] unit increase	Illumina [7506463] (imputed)	N
1003	chr17	54917638	54917639	rs9905199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q22		rs9905199-C	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1004	chr17	54944085	54944086	rs9892659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	17q22		rs9892659-G	0.302	8E-18		0.177767	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1004	chr17	54958092	54958093	rs28488643	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17q22	NR	rs28488643-T	0.9895	2E-24		1.3391	[1.08-1.6] unit decrease	Illumina [~ 10600000] (imputed)	N
1004	chr17	54975564	54975565	rs193155804	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	17q22	TRIM25	rs193155804-A	0.0026	9E-6		0.6285	[0.35-0.91] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1004	chr17	54976303	54976304	rs2525996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q22		rs2525996-G	NR	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1005	chr17	55068518	55068519	rs199511438	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	17q22		rs199511438-?	NR	1E-5		18.059	[16.78-19.34]	NR [675173]	N
1005	chr17	55094706	55094707	rs12947774	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	17q22	NR	rs12947774-?		6E-6		1.6129031	[NR]	Illumina [NR] (imputed)	N
1005	chr17	55108733	55108734	rs6503782	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration	1,207 European ancestry cases, 686 European ancestry controls	122 European ancestry cases, 86 European ancestry controls	17q22	intergenic	rs6503782-?	0.51	2E-6		1.41	[1.22-1.61]	Affymetrix [2543887] (imputed)	N
1005	chr17	55119993	55119994	rs8073390	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	17q22	intergenic	rs8073390-?	NR	7E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	17q22		rs17833789-C	NR	3E-21		0.0105521	[0.0083-0.0128] years increase	NR [7400000] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	17q22		rs17833789-C	NR	2E-15		0.00693613	[0.0052-0.0087] years decrease	NR [7400000] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17q22		rs17833789-C	NR	6E-18		0.028134115	[0.022-0.035] years increase	NR [7400000] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q22		rs17833789-?	NR	4E-36				NR [~ 8900000] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q22		rs17833789-?	NR	4E-53				NR [~ 8900000] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q22	AKAP1	rs17833789-A	0.4464	2E-19		1.069	NR	Affymetrix [9154080] (imputed)	N
1006	chr17	55230627	55230628	rs17833789	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Freckles	7,148 Japanese ancestry female cases, 4,034 Japanese ancestry female controls	NA	17q22	AKAP1, MSI2	rs17833789-C	0.45	2E-9		1.18	[1.12-1.25]	Affymetrix [536506]	N
1006	chr17	55230627	55230628	rs17833789	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17q22	MSI2	rs17833789-C	NR	9E-23		0.138183	[0.11-0.17] unit increase	Affymetrix [27512692] (imputed)	N
1006	chr17	55231167	55231168	rs62060349	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	17q22	AKAP12	rs62060349-T	0.552959	4E-10		1.0278282	NR	Affymetrix [~ 9600000] (imputed)	N
1006	chr17	55231167	55231168	rs62060349	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q22	NR	rs62060349-C	0.447764	5E-48		0.0492682	[0.043-0.056] unit increase	NR [19129689] (imputed)	N
1006	chr17	55231167	55231168	rs62060349	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	17q22		rs62060349-T	0.45	2E-14		0.16	[0.12-0.2] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1006	chr17	55231167	55231168	rs62060349	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q22	NR	rs62060349-C	NR	4E-22		0.0600078	NR unit increase	NR [NR] (imputed)	N
1006	chr17	55231167	55231168	rs62060349	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	17q22	AKAP1, MSI2	rs62060349-?	NR	2E-12		1.172333	[1.12-1.23]	Illumina [13436641] (imputed)	N
1006	chr17	55231600	55231601	rs145226407	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q22	NR	rs145226407-G	NR	5E-14		0.0650923	NR unit decrease	NR [NR] (imputed)	N
1006	chr17	55233852	55233853	rs12936050	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q22	NR	rs12936050-T	0.155878	8E-23		0.0453356	[0.036-0.054] unit decrease	NR [19129689] (imputed)	N
1006	chr17	55251616	55251617	rs2014936	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	MSI2	rs2014936-?	NR	4E-6	(adenosine monophosphate)	0.18150249	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1006	chr17	55292764	55292765	rs9910998	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q22	NR	rs9910998-A	0.07198	2E-18		0.003908	[0.003-0.0048] unit increase	Affymetrix [NR] (imputed)	N
1006	chr17	55302264	55302265	rs77704893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q22		rs77704893-C	NR	3E-16		0.0412	[0.031-0.051] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1007	chr17	55320892	55320893	rs79677007	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q22	NR	rs79677007-C	0.04007	3E-8	(ABAT)	1.382	NR unit increase	Illumina [1671387] (imputed)	N
1007	chr17	55329304	55329305	rs950608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q22	MSI2	rs950608-A	0.249579	3E-9		0.0153973	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr17	55329304	55329305	rs950608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q22	MSI2	rs950608-A	0.24958	3E-9		0.015151704	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1007	chr17	55329304	55329305	rs950608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs950608-A	0.298968	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
1007	chr17	55329304	55329305	rs950608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q22	NR	rs950608-A	0.251876	3E-11		0.013974	[0.0098-0.0181] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1007	chr17	55335127	55335128	rs35477994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q22		rs35477994-C	NR	7E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1007	chr17	55336890	55336891	rs62058023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q22		rs62058023-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1007	chr17	55360584	55360585	rs1815198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17q22		rs1815198-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1007	chr17	55361178	55361179	rs4239207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q22	MSI2	rs4239207-C	0.636882	2E-13		0.017087603	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr17	55362971	55362972	rs13353194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q22	MSI2	rs13353194-A	0.636548	5E-12		0.015968675	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr17	55367088	55367089	rs139505845	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q22	Intergenic	rs139505845-?		6E-6		1.17	[1.09-1.25]	Illumina [7645193] (imputed)	N
1007	chr17	55367088	55367089	rs139505845	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q22	Intergenic	rs139505845-?		1E-6		4.52	[2.47-8.30]	Illumina [7645193] (imputed)	N
1007	chr17	55392222	55392223	rs4794720	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q22	MSI2	rs4794720-G	0.362217	4E-8		0.014846	[0.0095-0.0201] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1007	chr17	55398578	55398579	rs72830848	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	17q22	MSI2	rs72830848-T	0.06	4E-8		2.25	[1.78-2.85]	Illumina [5258576] (imputed)	N
1007	chr17	55437410	55437411	rs703859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q22		rs703859-T	NR	3E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1008	chr17	55446363	55446364	rs12325702	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q22	MSI2	rs12325702-A	0.4439	2E-14		0.1374	[0.1-0.17] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1008	chr17	55447930	55447931	rs116950863	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	17q22	NR	rs116950863-?	NR	8E-6		0.1592	[0.09-0.229] unit decrease	Illumina [at least 560000] (imputed)	N
1008	chr17	55453125	55453126	rs73991808	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q22		rs73991808-T	0.953	5E-8				Affymetrix [10369434] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q22	MSI2	rs118121072-A	0.049889	7E-27		0.05561017	[0.045-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs118121072-A	0.0397462	2E-17				Affymetrix, Illumina [24649327] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q22	NR	rs118121072-A	0.049156	2E-19		0.038607	[0.03-0.047] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q22	NR	rs118121072-A	0.049433	5E-34		0.05159	[0.043-0.06] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs118121072-A	0.043075	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
1008	chr17	55463335	55463336	rs118121072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q22	NR	rs118121072-A	0.04932	5E-14		0.033666	[0.025-0.042] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1008	chr17	55463338	55463338	rs199691861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q22	MSI2	rs199691861-TG	0.04458	1E-21		0.0539271	[0.043-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55463340	55463341	rs188761458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q22	MSI2	rs188761458-T	0.0488	6E-26		0.09090811	[0.074-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr17	55463340	55463341	rs188761458	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q22	MSI2	rs188761458-T	0.0488	8E-14		0.06372918	[0.047-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1008	chr17	55463856	55463857	rs80093687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q22	MSI2	rs80093687-T	0.049501	5E-13		0.036959045	[0.027-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55463856	55463857	rs80093687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs80093687-T	0.0398612	2E-32				Affymetrix, Illumina [24588908] (imputed)	N
1008	chr17	55463856	55463857	rs80093687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs80093687-C	0.951409	6E-32				Affymetrix, Illumina [17210439] (imputed)	N
1008	chr17	55463856	55463857	rs80093687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q22	NR	rs80093687-C	0.950167	4E-35		0.054758	[0.046-0.063] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1008	chr17	55463856	55463857	rs80093687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q22		rs80093687-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1008	chr17	55465770	55465771	rs17834140	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q22		rs17834140-C	0.951	3E-8				Affymetrix [10369434] (imputed)	N
1008	chr17	55465770	55465771	rs17834140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q22	MSI2	rs17834140-T	0.049495	3E-16		0.041623186	[0.032-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55465770	55465771	rs17834140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q22	MSI2	rs17834140-T	0.049852	1E-64		0.0884289	[0.078-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55465770	55465771	rs17834140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q22	MSI2	rs17834140-T	0.0494830000000001	5E-13		0.03743253	[0.027-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55465770	55465771	rs17834140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q22	MSI2	rs17834140-T	0.049478	9E-23		0.05082347	[0.041-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55466294	55466295	rs116853700	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	17q22	NR	rs116853700-A	0.0425	2E-8		0.5517	[0.36-0.74] unit increase	Affymetrix, Illumina [7568033] (imputed)	N
1008	chr17	55466425	55466426	rs150497606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q22	MSI2	rs150497606-A	0.049424	4E-13		0.037348118	[0.027-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr17	55466425	55466426	rs150497606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs150497606-A	0.0420925	2E-13				Affymetrix, Illumina [23467995] (imputed)	N
1008	chr17	55466425	55466426	rs150497606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs150497606-A	0.0419529	8E-20				Affymetrix, Illumina [19872809] (imputed)	N
1008	chr17	55466425	55466426	rs150497606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q22	NR	rs150497606-A	0.049427	8E-23		0.045383	[0.036-0.054] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1008	chr17	55466425	55466426	rs150497606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q22		rs150497606-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1008	chr17	55498235	55498236	rs11868362	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	17q22	MSI2	rs11868362-?		4E-6	(endpoint 2, East Asian)	2.9411764	[NR]	Illumina [> 750000]	N
1008	chr17	55508276	55508277	rs9912487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q22	MSI2	rs9912487-A	0.103011	3E-11		0.025153033	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr17	55544558	55544559	rs34900740	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q22	NR	rs34900740-C		2E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
1008	chr17	55547694	55547695	rs2586222	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q22	NR	rs2586222-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1008	chr17	55547694	55547695	rs2586222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q22		rs2586222-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1009	chr17	55584564	55584564	rs145821641	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	17q22	MSI2	rs145821641-A	0.131196667	6E-6		0.393031	[0.22-0.56] unit decrease	Illumina [6952813] (imputed)	N
1009	chr17	55644194	55644195	rs9900782	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q22	NR	rs9900782-?	NR	5E-6		10513.438	NR unit decrease	Illumina [2379855]	N
1009	chr17	55655931	55655932	rs72833096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs72833096-C	0.1492	2E-8	(conditional-joint)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1009	chr17	55659232	55659233	rs16958559	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q22	NR	rs16958559-G	0.218	3E-8		0.0073063	[0.0047-0.0099] unit increase	NR [9732723] (imputed)	N
1009	chr17	55659232	55659233	rs16958559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q22	Intergenic	rs16958559-T	0.7907	3E-9	(MTAG)	0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1009	chr17	55659232	55659233	rs16958559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs16958559-T	0.7865	2E-8		0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1009	chr17	55659232	55659233	rs16958559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs16958559-T	0.7865	1E-10	(MTAG)	0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1009	chr17	55659232	55659233	rs16958559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q22	Intergenic	rs16958559-T	0.7738	1E-8	(MTAG)	0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1009	chr17	55671178	55671179	rs76716491	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	17q22	MSI2	rs76716491-T	0.012	5E-6	(EA)	0.462	[0.26-0.66] unit increase	Illumina [NR] (imputed)	N
1009	chr17	55671178	55671179	rs76716491	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	17q22	MSI2	rs76716491-T	0.012	6E-6	(EA)	0.454	[0.26-0.65] unit decrease	Illumina [NR] (imputed)	N
1009	chr17	55673856	55673857	rs74364822	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q22	NR	rs74364822-T	0.0601596	3E-8		0.036037	[0.023-0.049] unit decrease	NR [19129689] (imputed)	N
1010	chr17	55724896	55724897	rs113018921	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	17q22	MSI1	rs113018921-?	NR	8E-6		2.82		Illumina [6778521] (imputed)	N
1010	chr17	55728223	55728224	rs4793885	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	17q22	NR	rs4793885-?	NR	1E-9		1.06354	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1010	chr17	55731465	55731466	rs17762121	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	17q22		rs17762121-?	NR	4E-6		0.279	[0.16-0.39] unit decrease	Illumina [5082878] (imputed)	N
1010	chr17	55734197	55734198	rs8072058	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q22		rs8072058-A	0.7822	1E-8		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1010	chr17	55734197	55734198	rs8072058	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q22	MSI2	rs8072058-T	0.2188	9E-9		1.0284985		Affymetrix [11880941] (imputed)	N
1010	chr17	55736734	55736735	rs35065479	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	17q22	MSI2	rs35065479-A	NR	5E-6		1.054	[1.03-1.08]	Illumina [6627481] (imputed)	N
1010	chr17	55736734	55736735	rs35065479	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	17q22	TSPOAP1-AS1, MSI2	rs35065479-A	NR	2E-8		1.066	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1010	chr17	55743276	55743277	rs12938078	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q22	NR	rs12938078-A	NR	2E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1010	chr17	55745992	55745993	rs12603880	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	17q22		rs12603880-?	NR	7E-6	(clearcell)	1.59		Illumina [11595112] (imputed)	N
1010	chr17	55747415	55747416	rs11079321	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q22	MSI2	rs11079321-A	0.28	8E-6	(AA)	0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1010	chr17	55758645	55758646	rs703862	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q22	MSI2, CCDC182	rs703862-?	NR	7E-14		0.024858175	[0.018-0.031] unit increase	Illumina [27896057] (imputed)	N
1010	chr17	55758645	55758646	rs703862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs703862-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1010	chr17	55787997	55787998	rs146512685	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17q22		rs146512685-C	0.022012	6E-6		0.1042	[0.059-0.149] unit increase	Affymetrix [15580782] (imputed)	N
1010	chr17	55823551	55823552	rs8077059	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	17q22	intergenic	rs8077059-C	0.25	5E-6		0.081	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
1010	chr17	55825700	55825701	rs12949688	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	17q22	CCDC182	rs12949688-?		7E-6		1.07	[1.04-1.10]	Illumina [at least 473583] (imputed)	N
1011	chr17	55858921	55858922	rs185768319	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	17q22	NR	rs185768319-?	NR	3E-7		0.7188	[0.42-1.02] unit decrease	Illumina [at least 560000] (imputed)	N
1011	chr17	55866286	55866287	rs12938916	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	17q22	NR	rs12938916-?	NR	5E-7	(dominant)			Affymetrix [NR]	N
1011	chr17	55869472	55869473	rs112424116	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC015845.2	rs112424116-?	NR	2E-8	(male)	1.36616	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1011	chr17	55911441	55911442	rs1443267	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	17q22	MRPS23	rs1443267-A	0.13	3E-6		2.75	[1.78-4.24]	Affymetrix [426344]	N
1011	chr17	55922062	55922063	rs140127928	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	17q22	MRPS23	rs140127928-A	0.023	6E-6		0.35	[0.49-0.2] unit decrease	Affymetrix [7435577] (imputed)	N
1011	chr17	55963078	55963079	rs2586052	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	17q22	CUEDC1	rs2586052-?		2E-7				Illumina [~ 5190000] (imputed)	N
1012	chr17	55982221	55982222	rs11652228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q22		rs11652228-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1012	chr17	55985802	55985803	rs79359914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q22	CUEDC1	rs79359914-A	0.02716	2E-9		0.04130666	[0.028-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr17	56001656	56001657	rs62081768	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	17q22	NR	rs62081768-?	NR	1E-8	(Murimonas_intestini)	0.19865	[0.13-0.27] unit increase	Illumina [5293637] (imputed)	N
1012	chr17	56001656	56001657	rs62081768	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	17q22	NR	rs62081768-?	NR	1E-8	(Murimonas)	0.19865	[0.13-0.27] unit increase	Illumina [5293637] (imputed)	N
1012	chr17	56010959	56010960	rs8074980	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	17q22	intergenic	rs8074980-A	0.1716	1E-6		0.5238	[0.31-0.73] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1012	chr17	56010959	56010960	rs8074980	20802204	Baranzini SE	2010-09-01	Brain	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	17q22	CUEDC1	rs8074980-?	NR	2E-6				Illumina [~ 500000]	N
1012	chr17	56013714	56013715	rs2586088	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q22	VEZF1	rs2586088-?	NR	9E-7	(inosine)	0.2858685	[0.17-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1012	chr17	56076031	56076032	rs78227009	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q22	SRSF1	rs78227009-C	0.0128631322564359	2E-6	(G_Ruminococcus_HB)	1.75536	[1.04-2.47] unit decrease	Illumina [7711310] (imputed)	N
1012	chr17	56093060	56093061	rs11649864	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q22	NA	rs11649864-A	0.0859	3E-10		0.0192	[0.013-0.025] unit increase	NR [~ 27400000] (imputed)	N
1012	chr17	56093060	56093061	rs11649864	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q22	NA	rs11649864-A	0.0859	3E-10		0.0192	[0.013-0.025] unit increase	NR [~ 27400000] (imputed)	N
1013	chr17	56109862	56109863	rs76700673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q22		rs76700673-C	NR	9E-10		0.0265	[0.018-0.035] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1013	chr17	56109862	56109863	rs76700673	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q22	NR	rs76700673-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1013	chr17	56109862	56109863	rs76700673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q22		rs76700673-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1013	chr17	56116089	56116090	rs7224265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs7224265-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1013	chr17	56147957	56147958	rs9896162	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DYNLL2	5,365 Icelandic ancestry individuals	NA	17q22		rs9896162-T	0.3321	1E-13		0.139192	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1013	chr17	56153552	56153553	rs8071798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs8071798-A	0.1973	1E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1013	chr17	56154847	56154848	rs7224660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs7224660-A	0.1976	1E-9	(conditional-joint)	0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1013	chr17	56178899	56178900	rs35729384	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	DYNLL2	rs35729384-C	0.69765625	3E-10	(DYNLL2, 11493_169_3)	0.16086154	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1013	chr17	56179481	56179482	rs181214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q22		rs181214-T	0.2225	8E-10		0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1013	chr17	56185152	56185153	rs35552706	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB26	5,357 Icelandic ancestry individuals	NA	17q22		rs35552706-G	0.05764	8E-30		0.452614	[0.37-0.53] unit decrease	Illumina [7506463] (imputed)	N
1013	chr17	56227115	56227116	rs36089182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	NR	rs36089182-A	0.94484375	4E-19	(RAB26, 6997_32_3)	0.4869908	[0.38-0.59] unit increase	Illumina [> 1000000] (imputed)	N
1013	chr17	56227115	56227116	rs36089182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	NR	rs36089182-A	0.94484375	3E-34	(MPO, 2580_83_2)	0.672612	[0.57-0.78] unit increase	Illumina [> 1000000] (imputed)	N
1013	chr17	56227115	56227116	rs36089182	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	NR	rs36089182-A	0.94484375	2E-11	(KPNA2, 2860_19_2)	0.36704713	[0.26-0.47] unit increase	Illumina [> 1000000] (imputed)	N
1014	chr17	56238917	56238918	rs60216804	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	17q22		rs60216804-?	NR	5E-6		1.0415907	[1.02352526544999-1.05997501174548]	Illumina [up to 7827597] (imputed)	N
1014	chr17	56241307	56241308	rs16942732	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	17q22	OR4D2	rs16942732-T	0.2054	8E-6		0.2847	[0.16-0.41] unit decrease	Illumina [8203257] (imputed)	N
1014	chr17	56242573	56242574	rs1468574	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	17q22	LOC100419764	rs1468574-A	0.2052	8E-6		0.2847	[0.16-0.41] unit decrease	Illumina [8203257] (imputed)	N
1014	chr17	56272259	56272260	rs35892171	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB26	5,357 Icelandic ancestry individuals	NA	17q22		rs35892171-A	0.02016	6E-27		0.709577	[0.58-0.84] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56272259	56272260	rs35892171	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPO	5,357 Icelandic ancestry individuals	NA	17q22		rs35892171-A	0.02016	7E-18		0.572635	[0.44-0.7] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56274419	56274420	rs149610649	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	17q22		rs149610649-?	NR	1E-14		0.0832015	[0.061-0.106] unit increase	NR [9800000] (imputed)	N
1014	chr17	56277683	56277684	rs150579989	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Basophil count	438,607 European ancestry individuals	NA	17q22		rs150579989-?	NR	2E-19		0.15476	[0.12-0.19] unit increase	NR [9800000] (imputed)	N
1014	chr17	56280444	56280445	rs773279131	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	17q22		rs773279131-?	NR	1E-34		1.37696	[1.15-1.6] unit decrease	NR [9800000] (imputed)	N
1014	chr17	56281588	56281589	rs201265792	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	17q22		rs201265792-?	NR	1E-8		0.333308	[0.21-0.46] unit decrease	NR [9800000] (imputed)	N
1014	chr17	56283117	56283118	rs185405908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q22	MKS1	rs185405908-A	0.00824400000000003	4E-17		0.10354616	[0.079-0.128] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56283117	56283118	rs185405908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q22	MKS1	rs185405908-A	0.00825299999999995	7E-14		0.091902	[0.068-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56283117	56283118	rs185405908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q22	NR	rs185405908-C	0.99182	9E-16		0.089343	[0.068-0.111] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1014	chr17	56283117	56283118	rs185405908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q22		rs185405908-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1014	chr17	56289108	56289109	rs140543894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs140543894-G	0.985	1E-6	(AA)	0.121	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56289108	56289109	rs140543894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs140543894-G	0.985	4E-6	(AA)	0.482	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56289176	56289177	rs111786708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs111786708-C	0.985	1E-6	(AA)	0.121	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56289176	56289177	rs111786708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs111786708-C	0.985	4E-6	(AA)	0.482	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56291325	56291326	rs146873050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs146873050-C	0.985	1E-6	(AA)	0.121	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56291325	56291326	rs146873050	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MKS1	rs146873050-C	0.985	4E-6	(AA)	0.481	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56295700	56295701	rs62083740	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q22	LPO	rs62083740-C	0.7453125	8E-25	(LPO, 4801_13_3)	0.28808597	[0.23-0.34] unit increase	Illumina [> 1000000] (imputed)	N
1014	chr17	56305063	56305064	rs141829479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	Intergenic	rs141829479-A	0.985	1E-6	(AA)	0.122	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56305063	56305064	rs141829479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	Intergenic	rs141829479-A	0.985	4E-6	(AA)	0.487	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56307362	56307363	rs536070968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	17q22		rs536070968-A	0.010971	5E-31		0.253199	[0.21-0.3] unit decrease	Illumina [13470073] (imputed)	N
1014	chr17	56307362	56307363	rs536070968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q22		rs536070968-A	NR	5E-31		0.2532	[0.21-0.3] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1014	chr17	56307362	56307363	rs536070968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	17q22	NR	rs536070968-C	0.9906	9E-22		0.2558	[0.2-0.31] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1014	chr17	56307986	56307987	rs62083746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LPO	5,364 Icelandic ancestry individuals	NA	17q22		rs62083746-C	0.2504	9E-38		0.277022	[0.23-0.32] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56310261	56310262	rs116372990	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	Intergenic	rs116372990-A	0.985	1E-6	(AA)	0.122	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56310261	56310262	rs116372990	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	Intergenic	rs116372990-A	0.985	3E-6	(AA)	0.491	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56313903	56313904	rs8067912	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q22	NR	rs8067912-C	0.0307230178539626	5E-7	(IGP31)	0.4565	[0.28-0.63] unit increase	Illumina [~ 2500000] (imputed)	N
1014	chr17	56313903	56313904	rs8067912	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q22	NR	rs8067912-C	0.0305423055728934	1E-6	(IGP35)	0.4386	[0.26-0.62] unit increase	Illumina [~ 2500000] (imputed)	N
1014	chr17	56316721	56316722	rs116284889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	LPO	rs116284889-A	0.985	2E-6	(AA)	0.122	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56316721	56316722	rs116284889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	LPO	rs116284889-A	0.985	4E-6	(AA)	0.49	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56324767	56324768	rs150758818	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	LPO	rs150758818-G	0.986	2E-6	(AA)	0.12	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56328659	56328660	rs11337012	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	LPO	rs11337012-G	0.193	5E-18	(Lactoperoxidase, LPO.4801.13.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
1014	chr17	56339593	56339594	rs546552332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	17q22	LPO	rs546552332-C	0.00328700000000004	4E-18		0.16889374	[0.13-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56339593	56339594	rs546552332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q22	LPO	rs546552332-C	0.00328600000000001	4E-28		0.21377875	[0.18-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56339593	56339594	rs546552332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	17q22	LPO	rs546552332-C	0.0039	1E-10		0.1915609	[0.13-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56340450	56340451	rs8178393	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	LPO	rs8178393-T	0.992	1E-6	(AA)	0.194	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56345362	56345363	rs8178414	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB26	5,357 Icelandic ancestry individuals	NA	17q22		rs8178414-T	0.01874	5E-12		0.469372	[0.34-0.6] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56345362	56345363	rs8178414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	LPO	rs8178414-T	0.012872	3E-19		0.08879806	[0.069-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56348067	56348068	rs113203253	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q22	MPO	rs113203253-A	0.984	4E-6	(AA)	0.115	NR unit increase	Illumina [NR] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	17q22		rs35897051-?	NR	3E-28		0.141225	[0.12-0.17] unit decrease	NR [9800000] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q22		rs35897051-G	0.00701	7E-14		1.24	[0.92-1.56] unit decrease	Illumina [17954496] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs35897051-G	0.00653300000000001	2E-31		0.16854054	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q22	MPO	rs35897051-G	0.00653000000000004	5E-12		0.09990073	[0.072-0.128] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	17q22		rs35897051-G	0.007855753	2E-42	(MPO)	1.4751648	unit decrease	Affymetrix, Illumina [8509364] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	NR	rs35897051-G	0.006	8E-23	(Myeloperoxidase, MPO.2580.83.2)	1.56	[1.25-1.87] unit decrease	Affymetrix [10572788] (imputed)	N
1014	chr17	56348225	56348226	rs35897051	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	NR	rs35897051-G	0.006	5E-16	(Ras-related protein Rab-26, RAB26.6997.32.3)	1.29	[0.98-1.6] unit decrease	Affymetrix [10572788] (imputed)	N
1014	chr17	56350195	56350196	rs119468010	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17q22		rs119468010-?	NR	7E-13		0.119515	[0.086-0.153] unit increase	NR [9800000] (imputed)	N
1014	chr17	56350195	56350196	rs119468010	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	17q22		rs119468010-?	NR	8E-14		0.127637	[0.094-0.161] unit increase	NR [9800000] (imputed)	N
1014	chr17	56350195	56350196	rs119468010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q22	MPO	rs119468010-A	0.00353599999999998	2E-16		0.15245327	[0.12-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56350195	56350196	rs119468010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q22	MPO	rs119468010-A	0.00353499999999996	9E-18		0.15943281	[0.12-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56350827	56350841	rs536522394	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q22		rs536522394-G	0.00506	4E-16		1.54	[1.17-1.91] unit decrease	Illumina [17954496] (imputed)	N
1014	chr17	56350827	56350841	rs536522394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs536522394-G	0.00128300000000003	3E-10		0.19524163	[0.13-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56351016	56351017	rs149133270	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17q22		rs149133270-?	NR	1E-8		0.160997	[0.1-0.22] unit increase	NR [9800000] (imputed)	N
1014	chr17	56351016	56351017	rs149133270	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	17q22		rs149133270-?	NR	5E-10		0.184354	[0.13-0.24] unit increase	NR [9800000] (imputed)	N
1014	chr17	56351016	56351017	rs149133270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q22	MPO	rs149133270-T	0.00122999999999995	2E-10		0.1991646	[0.14-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56354639	56354640	rs34212101	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB26	5,357 Icelandic ancestry individuals	NA	17q22		rs34212101-A	0.1196	1E-22		0.278579	[0.22-0.33] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56354639	56354640	rs34212101	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPO	5,357 Icelandic ancestry individuals	NA	17q22		rs34212101-A	0.1196	9E-9		0.165012	[0.11-0.22] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q22		rs28730837-G	0.984	1E-23				Affymetrix [10369434] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q22		rs28730837-G	0.984	6E-10				Affymetrix [10369434] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.016309	2E-9		0.060856204	[0.041-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.0162870000000001	3E-17		0.08557475	[0.066-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.016313	2E-9		0.06059478	[0.041-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.0163180000000001	1E-12		0.061928716	[0.045-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.016319	5E-26		0.09249616	[0.075-0.11] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56355396	56355397	rs28730837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q22	MPO	rs28730837-A	0.016313	3E-30		0.10015561	[0.083-0.117] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q22		rs56378716-A	0.987	1E-13				Affymetrix [10369434] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q22		rs56378716-A	0.987	2E-18				Affymetrix [10369434] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q22		rs56378716-A	0.987	4E-16				Affymetrix [10369434] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs56378716-G	0.012668	5E-30		0.112304814	[0.093-0.132] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs56378716-G	0.012652	7E-10		0.061258525	[0.042-0.081] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q22	MPO	rs56378716-G	0.012656	3E-23		0.09847806	[0.079-0.118] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	17q22	MPO	rs56378716-G	0.02	5E-16		0.5	unit decrease	Illumina [5270624] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	9E-13		0.1142649	[0.083-0.146] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	3E-17		0.1350541	[0.1-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	2E-18		0.1402163	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	2E-15		0.1262833	[0.095-0.157] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	2E-18		0.1400379	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	4E-17		0.1350727	[0.1-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56356501	56356502	rs56378716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q22	MPO	rs56378716-G	0.0127	6E-17		0.1341307	[0.1-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56357817	56357818	rs7208693	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDYL2	5,362 Icelandic ancestry individuals	NA	17q22		rs7208693-A	0.1154	4E-23		0.277738	[0.22-0.33] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPO	5,357 Icelandic ancestry individuals	NA	17q22		rs34097845-T	0.04959	9E-50		0.624887	[0.54-0.71] unit decrease	Illumina [7506463] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	17q22		rs34097845-T	0.057	4E-134		0.3993	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q22		rs34097845-T	0.01967	1E-11		0.6841	[0.49-0.88] unit decrease	Illumina [17954496] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs34097845-T	0.056615	2E-11		0.03810625	[0.027-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	MPO	rs34097845-T	0.056525	7E-71		0.103581734	[0.092-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q22	MPO	rs34097845-T	0.0565600000000001	9E-50		0.086246334	[0.075-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs34097845-T	0.0540381	1E-120				Affymetrix, Illumina [23467995] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q22	NR	rs34097845-T	0.05601	3E-124		0.100554	[0.092-0.109] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	MPO	rs34097845-T	0.067	9E-31	(Myeloperoxidase, MPO.2580.83.2)	0.57	[0.47-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q22	MPO	rs34097845-T	0.0578	4E-63		0.1320404	[0.12-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q22	MPO	rs34097845-T	0.0578	8E-41		0.1056388	[0.09-0.121] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56358428	56358429	rs34097845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q22	MPO	rs34097845-T	0.0578	9E-57		0.1252988	[0.11-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1014	chr17	56358761	56358762	rs2333227	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q22	MPO	rs2333227-C	NR	8E-6		1.0618	NR	Affymetrix, Illumina [8278136] (imputed)	N
1015	chr17	56367631	56367632	rs11079341	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	17q22		rs11079341-A	0.85	3E-55		0.1738	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1015	chr17	56369848	56369849	rs12940923	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		17q22	MPO, RNF43, PPM1E	rs12940923-A	0.84	4E-9		0.07	[0.050-0.090] unit decrease	Affymetrix, Illumina [2421770]	N
1015	chr17	56374373	56374374	rs141487842	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q22		rs141487842-A	0.01	4E-8				NR [NR] (imputed)	N
1015	chr17	56382511	56382512	rs11867412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	NR	rs11867412-T	0.163	1E-15	(Ras-related protein Rab-26, RAB26.6997.32.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPO	5,357 Icelandic ancestry individuals	NA	17q22		rs138284624-T	0.01883	3E-17		0.574552	[0.44-0.71] unit decrease	Illumina [7506463] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q22		rs138284624-T	NR	1E-32		0.1268	[0.11-0.15] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD127 on granulocyte	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q22		rs138284624-T	0.02774	3E-22		0.7924	[0.63-0.95] unit decrease	Illumina [17954496] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q22	BZRAP1	rs138284624-T	0.012742	1E-32		0.11714095	[0.098-0.136] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q22	BZRAP1	rs138284624-T	0.012744	2E-44		0.1376928	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q22	BZRAP1	rs138284624-T	0.012753	2E-26		0.10502854	[0.086-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q22		rs138284624-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1015	chr17	56385572	56385573	rs138284624	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q22	BZRAP1	rs138284624-T	0.0127	1E-14		0.1225074	[0.091-0.154] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56386607	56386607	rs200436316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q22		rs200436316-GTCCTCCTCT	NR	1E-72		0.1019	[0.091-0.113] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1015	chr17	56386607	56386607	rs200436316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	17q22		rs200436316-GTCCTCCTCT	NR	2E-10		0.0314	[0.022-0.041] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1015	chr17	56386607	56386607	rs200436316	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q22	BZRAP1	rs200436316-GTCCTCCTCT	0.064	3E-18	(Ras-related protein Rab-26, RAB26.6997.32.3)	0.46	[0.36-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
1015	chr17	56386607	56386607	rs200436316	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q22	BZRAP1	rs200436316-GTCCTCCTCT	0.0534	3E-12		0.05936271	[0.043-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56388926	56388927	rs2072144	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q22		rs2072144-T	0.7	4E-26				Affymetrix [10369434] (imputed)	N
1015	chr17	56389731	56389732	rs9913145	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	17q22	BZRAP1	rs9913145-?	0.116	8E-6				Illumina [308166]	N
1015	chr17	56390422	56390423	rs2680706	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q22	BZRAP1	rs2680706-G	0.2766	1E-17		0.03417565	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56399091	56399092	rs118137040	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	17q22	BZRAP1	rs118137040-?	NR	4E-7		6.57	[3.17-13.64]	Illumina [9380034] (imputed)	N
1015	chr17	56404348	56404349	rs2526378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q22		rs2526378-G	NR	3E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1015	chr17	56407518	56407518	rs3030904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	17q22		rs3030904-TTA	0.199142	2E-9		0.0262345	[0.018-0.035] unit increase	Illumina [13479091] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	17q22		rs2632516-?	NR	7E-10				Illumina [NR] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q22	MIR142	rs2632516-C	0.442992	1E-23		0.022818396	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q22	MIR142	rs2632516-C	0.442999	1E-18		0.020113248	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q22	MIR142	rs2632516-C	0.443077	9E-42		0.031060722	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q22	NR	rs2632516-C	0.446157	3E-23		0.018511	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	17q22	MIR142, TSPOAP1-AS1	rs2632516-G	0.56	5E-8		1.0638298	[1.04-1.1]	Affymetrix, Illumina [11480632] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	17q22	BZRAP1-AS1	rs2632516-C	0.455	1E-6		4.9	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	17q22	BZRAP1-AS1	rs2632516-C	NR	1E-9		6.0526648	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1015	chr17	56409088	56409089	rs2632516	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease in APOE e4- carriers	4,829 European ancestry cases, 9,740 European ancestry controls, 607 African American cases, 2,270 African American controls, 416  Japanese ancestry cases, 743 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	2,751 European ancestry cases, 11,497 European ancestry controls	17q22	NR	rs2632516-G	NR	4E-6		1.098901	[1.05-1.14]	NR [NR]	N
1015	chr17	56409088	56409089	rs2632516	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	17q22	NR	rs2632516-G	NR	4E-8		1.0869565	[1.06-1.1]	NR [NR]	N
1015	chr17	56409088	56409089	rs2632516	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	17q22	BZRAP1, BZRAP1-AS1	rs2632516-?	0.6	4E-8		1.0869565	[1.06-1.1]	NR [NR]	N
1015	chr17	56409088	56409089	rs2632516	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q22	MIR142	rs2632516-C	0.4437	1E-25		0.03754437	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q22		rs2526377-G	NR	3E-18		0.0167	[0.013-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q22		rs2526377-G	0.504185	3E-8		0.0186711	[0.012-0.025] unit increase	Illumina [13478928] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	17q22		rs2526377-G	0.505241	5E-8		0.0242659	[0.016-0.033] unit increase	Illumina [13471440] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q22		rs2526377-A	0.558	4E-31				Affymetrix [10369434] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q22	BZRAP1-AS1	rs2526377-G	0.44254	2E-35		0.028695647	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs2526377-G	0.464378	3E-26				Affymetrix, Illumina [24588908] (imputed)	N
1015	chr17	56410040	56410041	rs2526377	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q22	BZRAP1-AS1	rs2526377-G	0.4428	1E-10		0.02374733	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56413634	56413635	rs75394768	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KPNA2	5,364 Icelandic ancestry individuals	NA	17q22		rs75394768-A	0.06082	1E-17		0.339152	[0.26-0.42] unit decrease	Illumina [7506463] (imputed)	N
1015	chr17	56413634	56413635	rs75394768	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q22		rs75394768-C	0.939	1E-34				Affymetrix [10369434] (imputed)	N
1015	chr17	56416077	56416078	rs77224258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q22		rs77224258-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1015	chr17	56417001	56417002	rs1985749	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombin generation parameter (endogenous thrombin potential)	327 European ancestry individuals	NA	17q22		rs1985749-A	0.323	3E-7		0.399	% increase	Illumina [7000000] (imputed)	N
1015	chr17	56420162	56420163	rs2680690	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q22	NR	rs2680690-?	NR	9E-6		0.0077118	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1015	chr17	56423200	56423201	rs2070107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q22	SUPT4H1	rs2070107-C	0.171473	8E-11		0.019104406	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56423200	56423201	rs2070107	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q22	Intergenic	rs2070107-?		2E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
1015	chr17	56424709	56424710	rs757485	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs757485-T	NR	3E-8		5.529	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1015	chr17	56426026	56426027	rs12938538	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q22	NR	rs12938538-T	NR	9E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1015	chr17	56426788	56426789	rs7207531	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	17q22	NR	rs7207531-G	0.58	1E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1015	chr17	56427127	56427128	rs56058331	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	17q22	BZRAP1-AS1, SUPT4H1	rs56058331-A	0.42	1E-8		0.006263	[0.0041-0.0084] unit increase	NR [16367095] (imputed)	N
1015	chr17	56427141	56427142	rs2526376	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs2526376-A	NR	1E-8		5.68	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1015	chr17	56427141	56427142	rs2526376	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	BZRAP1-AS1	rs2526376-A	NR	3E-9		5.953	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1015	chr17	56427317	56427318	rs7222143	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	17q22	NR	rs7222143-A	0.444808	7E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1015	chr17	56429763	56429764	rs2632519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q22		rs2632519-A	NR	2E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB26	5,357 Icelandic ancestry individuals	NA	17q22		rs34523089-T	0.1658	4E-20		0.230885	[0.18-0.28] unit decrease	Illumina [7506463] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q22		rs34523089-T	NR	3E-8		0.0144	[0.0093-0.0195] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	17q22	RNF43	rs34523089-T	0.161	3E-48		0.069	[0.059-0.078] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q22	RNF43	rs34523089-T	0.157524	3E-15		0.0242202	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q22	RNF43	rs34523089-T	0.157532	5E-15		0.023650182	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs34523089-T	0.152305	5E-22				Affymetrix, Illumina [24246363] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q22	NR	rs34523089-T	0.157559	2E-24		0.025495	[0.021-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs34523089-T	0.152545	3E-19				Affymetrix, Illumina [20825802] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q22	NR	rs34523089-T	0.157686	2E-22		0.025705	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs34523089-T	0.152396	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q22	NR	rs34523089-T	0.15765	1E-12		0.018068	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs34523089-T	0.152297	1E-9				Affymetrix, Illumina [24558453] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q22	RNF43	rs34523089-T		2E-10		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q22		rs34523089-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q22	RNF43	rs34523089-T	0.1577	2E-11		0.03228479	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56436108	56436109	rs34523089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q22	RNF43	rs34523089-T	0.1578	1E-11		0.03274841	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1015	chr17	56436129	56436130	rs199598395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	17q22		rs199598395-T	NR	3E-21		1.1488	[0.91-1.39] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
1015	chr17	56448296	56448297	rs2257205	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	17q22		rs2257205-T	0.109	4E-9		0.22300561	[0.15-0.3] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1015	chr17	56448296	56448297	rs2257205	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	17q22		rs2257205-T	0.1107	1E-9		6.09927	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1015	chr17	56448296	56448297	rs2257205	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	17q22	RNF43	rs2257205-A	0.33	8E-6	(dominant)	1.38	[1.20-1.59]	Illumina [420236]	N
1015	chr17	56451821	56451822	rs2632512	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	17q22	RNF43	rs2632512-T	0.2	2E-7		1.06	[1.04-1.08]	NR [~ 8000000] (imputed)	N
1015	chr17	56455640	56455641	rs2680707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17q22		rs2680707-C	NR	4E-8		0.0407	[0.026-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1015	chr17	56455640	56455641	rs2680707	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q22	RP5-1171I10.4	rs2680707-T	0.212003	4E-8		0.040723637	[0.026-0.055] unit increase	Affymetrix [7288503] (imputed)	N
1015	chr17	56455640	56455641	rs2680707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q22		rs2680707-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1015	chr17	56456119	56456120	rs2680708	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q22	RNF43	rs2680708-G	0.61	2E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1015	chr17	56459062	56459063	rs8070135	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	BZRAP1-AS1	rs8070135-A	NR	2E-13		7.387	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1015	chr17	56462782	56462783	rs7211294	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q22	NR	rs7211294-G		5E-11		0.1	[0.061-0.139] unit increase	NR [NR]	N
1015	chr17	56474905	56474906	rs2189681	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	17q22		rs2189681-?	NR	1E-8				NR [7857346] (imputed)	N
1015	chr17	56484543	56484544	rs142008161	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q22	NR	rs142008161-?	NR	9E-10				Illumina [7760689] (imputed)	N
1016	chr17	56500897	56500898	rs68100606	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q22	NR	rs68100606-G	0.768166	5E-11		0.0143543	[0.01-0.019] unit increase	NR [NR]	N
1016	chr17	56501419	56501420	rs2429369	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	17q22	SKA2, MTMR4, SEPT4, LOC101927688, TEX14, PPM1E, TRIM37, RAD51C, RNF43, HSF5	rs2429369-?	NR	3E-7		0.0295	[0.018-0.041] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1016	chr17	56517033	56517034	rs6503863	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	HSF5	rs6503863-A	NR	4E-11		6.611	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1016	chr17	56517033	56517034	rs6503863	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q22	HSF5	rs6503863-A	NR	6E-9		0.018054951	[0.012-0.024] unit increase	Affymetrix [NR]	N
1016	chr17	56518298	56518299	rs181550178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aplastic anemia	4,128 European ancestry cases, 469,372 European ancestry controls, 53 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	17q22		rs181550178-A	NR	7E-9		0.6799	[0.45-0.91] unit increase	Affymetrix, Illumina [25844082] (imputed)	N
1016	chr17	56525513	56525515	rs33943640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q22		rs33943640-C	NR	2E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1016	chr17	56584204	56584205	rs2302189	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q22	NR	rs2302189-A	0.368787	7E-9		0.03770727	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1016	chr17	56584204	56584205	rs2302189	21940522	Shaffer JR	2011-09-21	J Dent Res	Genome-wide association scan for childhood caries implicates novel genes.	Dental caries	1,305 European ancestry children	1,695 European ancestry children	17q22	intergenic	rs2302189-?	NR	8E-6		1.33	[-0.76720-3.42720]	Illumina [1450678] (imputed)	N
1016	chr17	56584507	56584508	rs2302190	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	NR	rs2302190-?	NR	2E-7		5.226	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1016	chr17	56584507	56584508	rs2302190	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	17q22	HSF5, RNF43, MTMR4	rs2302190-C	0.2	1E-6	(Age 6)	0.94	[0.92-0.96] unit increase	Illumina [2461244] (imputed)	N
1016	chr17	56589405	56589406	rs34920953	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q22	Intergenic	rs34920953-?		9E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
1016	chr17	56599463	56599464	rs113162402	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	17q22	SEPT4	rs113162402-?		1E-7				Illumina [~ 5190000] (imputed)	N
1016	chr17	56601931	56601932	rs537026504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q22	SEPT4, RP11-112H10.4	rs537026504-C	0.272344	6E-11		0.0173439	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1016	chr17	56604810	56604811	rs740605	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs740605-T	NR	2E-10		6.357	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1016	chr17	56618822	56618823	rs80096138	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	17q22		rs80096138-?	NR	3E-6		0.889597	[0.84-0.94]	NR [688737]	N
1017	chr17	56629678	56629679	rs66695290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q22		rs66695290-A	NR	1E-8		0.0253	[0.016-0.034] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1017	chr17	56632542	56632543	rs9905704	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	17q22	TEX14	rs9905704-T	0.67	2E-14		1.27	1.19-1.35	Illumina [9210350] (imputed)	N
1017	chr17	56632542	56632543	rs9905704	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	17q22	TEX14	rs9905704-G	0.68	3E-20		1.27	[1.22-1.32]	Illumina [at least 371504] (imputed)	N
1017	chr17	56632542	56632543	rs9905704	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	17q22	TEX14	rs9905704-T	0.708	4E-6		1.23	[NR]	Illumina [610240]	N
1017	chr17	56632542	56632543	rs9905704	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	17q22	RAD51C, TEX14	rs9905704-T	0.67	3E-9		1.21	[1.10-1.34]	Illumina [307291]	N
1017	chr17	56632542	56632543	rs9905704	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	17q22	C17orf47, RAD51C, PPM1E, SEPT4, TRIM37, SKA2, TEX14	rs9905704-T	0.68	4E-13		1.27	[1.18-1.33]	Illumina [NR]	N
1017	chr17	56637544	56637545	rs9902820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q22		rs9902820-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1017	chr17	56637544	56637545	rs9902820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q22	Intergenic	rs9902820-A	0.6	1E-8	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1017	chr17	56637544	56637545	rs9902820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q22	Intergenic	rs9902820-A	0.6045	3E-9	(MTAG)	0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1017	chr17	56641199	56641200	rs7359501	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	17q22	TEX14	rs7359501-T	0.4091	2E-9		0.0565	[0.038-0.075] unit increase	NR [9744772] (imputed)	N
1017	chr17	56676367	56676368	rs389389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	17q22	NR	rs389389-C	NR	2E-10		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr17	56709033	56709034	rs411988	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (ferritin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	17q22	TEX14	rs411988-A	0.564	2E-10		0.044	[0.03-0.058] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
1017	chr17	56709057	56709058	rs412000	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q22	TEX14	rs412000-G	0.44499999999999995	2E-9		1.0226527		Affymetrix [11880941] (imputed)	N
1017	chr17	56709057	56709058	rs412000	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q22	RAD51C, TEX14	rs412000-C	NR	2E-9		0.1641	[0.11-0.22] unit decrease	Illumina [2446724] (imputed)	N
1017	chr17	56711541	56711542	rs596714	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	NR	rs596714-?	NR	5E-8		5.443	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1017	chr17	56732303	56732304	rs2611774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q22		rs2611774-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1017	chr17	56752042	56752043	rs561808962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q22	TEX14	rs561808962-A	0.011398	7E-9		0.0700029	[0.046-0.094] unit increase	Affymetrix [93095623] (imputed)	N
1017	chr17	56752042	56752043	rs561808962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q22	TEX14	rs561808962-A	0.011399	1E-15		0.09678368	[0.073-0.121] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr17	56755222	56755223	rs35662455	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q22	TEX14	rs35662455-C	0.8855	1E-10		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1018	chr17	56755222	56755223	rs35662455	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q22	TEX14	rs35662455-C	0.8843	1E-10		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1018	chr17	56757583	56757584	rs302864	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q22	TEX14	rs302864-A	0.0870256600908061	2E-8		0.071	[0.046-0.096] unit increase	NR [5035015] (imputed)	N
1018	chr17	56776662	56776663	rs695137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs695137-A	0.272927	5E-15				Affymetrix, Illumina [19872809] (imputed)	N
1018	chr17	56817152	56817153	rs34479964	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	17q22	NR	rs34479964-?	NR	3E-9	(MPO)	0.32856	[0.22-0.44] unit decrease	Illumina [11901634] (imputed)	N
1018	chr17	56826952	56826953	rs34556895	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q22	PPM1E	rs34556895-T	0.3107	4E-13		0.2115	[0.15-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1018	chr17	56834228	56834229	rs304296	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q22	NR	rs304296-G	0.366799	1E-8		0.037241865	[0.024-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1018	chr17	56847944	56847945	rs9303401	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	17q22	PPM1E	rs9303401-?	NR	5E-6	(NAM)			Affymetrix [70897]	N
1018	chr17	56873024	56873025	rs9904677	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	NR	rs9904677-?	NR	3E-6		4.677	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1018	chr17	56876626	56876627	rs34430710	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q22	PPM1E	rs34430710-A	0.6775	4E-15		0.2069	[0.16-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1019	chr17	56900009	56900010	rs11657850	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q22	NR	rs11657850-?	NR	8E-6		0.15333	[0.086-0.221] unit increase	NR [13958389] (imputed)	N
1019	chr17	56950567	56950568	rs146255527	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q22	PPM1E	rs146255527-T	0.997	1E-6	(AA)	0.233	unit increase	Illumina [NR] (imputed)	N
1019	chr17	56953146	56953147	rs9911578	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q22	PPM1E	rs9911578-T	NR	4E-10		0.018887537	[0.013-0.025] unit increase	Affymetrix [NR]	N
1019	chr17	56999426	56999427	rs66954617	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q22	NR	rs66954617-A	NR	2E-13		7.369	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1020	chr17	57060632	57060633	rs138387343	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q22	PPM1E	rs138387343-C	0.997	1E-6	(AA)	0.232	unit increase	Illumina [NR] (imputed)	N
1020	chr17	57095211	57095212	rs74370218	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q22	NR	rs74370218-C	0.363817	1E-9		0.03964215	[0.027-0.052] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1020	chr17	57095211	57095212	rs74370218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q22	Intergenic	rs74370218-T	0.3725	1E-9		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1020	chr17	57095211	57095212	rs74370218	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q22	TRIM37	rs74370218-T	NR	2E-14		7.638	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1020	chr17	57111268	57111269	rs117987711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17q22		rs117987711-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1020	chr17	57114918	57114938	rs200267040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q22	TRIM37	rs200267040-C	0.604883	2E-19		0.020960383	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1020	chr17	57114918	57114938	rs200267040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q22	TRIM37	rs200267040-C	0.604955	3E-17		0.019818205	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr17	57158551	57158552	rs61758100	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q22		rs61758100-A	0.01	7E-9				NR [NR] (imputed)	N
1021	chr17	57158551	57158552	rs61758100	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q22		rs61758100-A	0.01	5E-6		0.14	[-0.0364-0.3164] unit increase	NR [NR] (imputed)	N
1021	chr17	57202640	57202641	rs62081885	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q22	NR	rs62081885-?	NR	6E-6		0.0078797	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1021	chr17	57229715	57229716	rs7502947	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	17q22	NR	rs7502947-G		2E-6				NR [525577]	N
1022	chr17	57287453	57287454	rs6503905	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (plasma)	9,260 European ancestry individuals		17q22	C17orf71	rs6503905-A	0.37	3E-12		0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [2421770]	N
1022	chr17	57312768	57312769	rs190383363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KPNA2	5,364 Icelandic ancestry individuals	NA	17q22		rs190383363-T	0.01353	2E-13		0.596775	[0.44-0.76] unit decrease	Illumina [7506463] (imputed)	N
1022	chr17	57323414	57323415	rs568624610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	17q22	NR	rs568624610-A	0.9941	2E-17		0.3435	[0.26-0.42] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1022	chr17	57326487	57326488	rs73321289	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	17q22	GDPD1	rs73321289-T	0.0121	3E-6		1.98	[1.55-2.44]	Illumina [64973696] (imputed)	N
1022	chr17	57355429	57355430	rs28687325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q22		rs28687325-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1022	chr17	57356183	57356184	rs6503913	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	17q22	NR	rs6503913-A	0.35205	6E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1022	chr17	57362613	57362614	rs116986845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q22	NR	rs116986845-T	NR	1E-9		0.05	[0.034-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr17	57376676	57376677	rs9303406	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q22	GDPD1	rs9303406-C	0.5749	2E-8		0.1846	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1022	chr17	57382571	57382572	rs17763505	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q22	NR	rs17763505-T	0.02962	1E-8	(DPP7)	0.0963	NR unit increase	Illumina [1671387] (imputed)	N
1022	chr17	57384443	57384444	rs59549190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q22		rs59549190-A	NR	4E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1022	chr17	57384443	57384444	rs59549190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q22		rs59549190-A	NR	5E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1022	chr17	57398321	57398322	rs139737747	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q22		rs139737747-C	0.991	2E-11				Affymetrix [10369434] (imputed)	N
1022	chr17	57402339	57402340	rs8076404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	17q22	NR	rs8076404-T	0.600133	1E-11		0.02708	[0.019-0.035] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1022	chr17	57407018	57407019	rs1451506	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q22	NR	rs1451506-G	0.8732	3E-8		0.0417	[0.027-0.056] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1023	chr17	57410923	57410924	rs188809876	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPO	5,357 Icelandic ancestry individuals	NA	17q22		rs188809876-A	0.01193	7E-26		0.896775	[0.73-1.06] unit decrease	Illumina [7506463] (imputed)	N
1023	chr17	57411670	57411671	rs72831252	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	17q22		rs72831252-?	NR	2E-6		1.16088	[1.1-1.22]	NR [682398]	N
1023	chr17	57440523	57440524	rs8082454	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	17q22	NR	rs8082454-?	NR	8E-6		0.1035	[0.058-0.149] unit decrease	Illumina [at least 560000] (imputed)	N
1023	chr17	57446587	57446588	rs16943470	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	17q22	YPEL2	rs16943470-?		5E-6	(endpoint 6, dominant)	2.97	[NR]	Illumina [> 750000]	N
1023	chr17	57466503	57466504	rs728478	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q22	YPEL2	rs728478-G	0.445	8E-6		0.4	[0.22-0.58] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1023	chr17	57468541	57468542	rs1009674	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	17q22		rs1009674-T	0.5155	2E-15		0.57	[0.43-0.71] unit decrease	Affymetrix [9800000]	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	9E-9	(310 ms)	0.0326192	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	9E-10	(306 ms)	0.0346789	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	9E-10	(290 ms)	0.0346605	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	8E-9	(320 ms)	0.0327513	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	8E-9	(288 ms)	0.0327182	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	8E-11	(294 ms)	0.0366384	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	8E-10	(302 ms)	0.0349858	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	7E-11	(314 ms)	0.0368493	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	7E-11	(296 ms)	0.0368132	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	7E-10	(304 ms)	0.0350862	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	4E-9	(318 ms)	0.0337518	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	4E-9	(308 ms)	0.0333733	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	4E-11	(298 ms)	0.0371166	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	3E-10	(300 ms)	0.0356483	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	2E-9	(312 ms)	0.0340807	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	2E-8	(326 ms)	0.0319038	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	2E-8	(324 ms)	0.0314542	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	2E-8	(282 ms)	0.0318464	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	2E-10	(316 ms)	0.0361099	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	1E-8	(286 ms)	0.0320059	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	1E-8	(284 ms)	0.0323279	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471020	57471021	rs138998340	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q22	YPEL2	rs138998340-G	0.513402	1E-10	(292 ms)	0.0362448	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1023	chr17	57471021	57471022	rs142166837	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	17q22		rs142166837-C	0.52	8E-8		0.032	[0.02-0.044] unit decrease	Affymetrix [NR]	N
1023	chr17	57471021	57471022	rs142166837	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q22	YPEL2	rs142166837-C	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1023	chr17	57494446	57494447	rs16943502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q22		rs16943502-G	0.467691	3E-13		0.025426	[0.019-0.032] unit decrease	Illumina [13478928] (imputed)	N
1023	chr17	57496969	57496970	rs9895429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q22		rs9895429-C	NR	8E-25		0.0225	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1023	chr17	57496969	57496970	rs9895429	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q22		rs9895429-A	0.762	2E-8				Affymetrix [10369434] (imputed)	N
1023	chr17	57496969	57496970	rs9895429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q22	NR	rs9895429-C	NR	7E-22		0.0274	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1023	chr17	57496969	57496970	rs9895429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q22		rs9895429-C	0.237961	1E-14		0.020523448	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr17	57496969	57496970	rs9895429	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q22	NR	rs9895429-C	0.240821	2E-20		0.019932	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1023	chr17	57499782	57499783	rs16943520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q22		rs16943520-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1023	chr17	57502827	57502828	rs4968361	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q22	NR	rs4968361-A	NR	9E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1023	chr17	57504478	57504478	rs200392584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q22		rs200392584-CA	NR	1E-22		0.0298	[0.024-0.036] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1023	chr17	57504919	57504920	rs12600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q22	RP11-567L7.6	rs12600858-A	0.226194	3E-14		0.020265432	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr17	57504919	57504920	rs12600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q22	RP11-567L7.6	rs12600858-A	0.226205	9E-14		0.019882116	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr17	57504919	57504920	rs12600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q22	RP11-567L7.6	rs12600858-A	0.226256	1E-15		0.0216277	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1023	chr17	57504919	57504920	rs12600858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q22	RP11-567L7.6	rs12600858-A	0.226258	2E-10		0.016979303	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr17	57504919	57504920	rs12600858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs12600858-A	0.327158	1E-23				Affymetrix, Illumina [24588908] (imputed)	N
1023	chr17	57506091	57506092	rs2060779	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17q22	LINC01476	rs2060779-A	0.2399	2E-6		0.0071	[0.004-0.0102] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1023	chr17	57506091	57506092	rs2060779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q22	RP11-567L7.6	rs2060779-A	0.224037	2E-31		0.031440157	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr17	57506091	57506092	rs2060779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q22	NR	rs2060779-A	0.319138	8E-14				Affymetrix, Illumina [21126107] (imputed)	N
1023	chr17	57506091	57506092	rs2060779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q22	NR	rs2060779-A	0.225676	9E-16		0.019317	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1023	chr17	57506091	57506092	rs2060779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q22		rs2060779-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1023	chr17	57515861	57515862	rs60431147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q22	RP11-567L7.6	rs60431147-C	0.246038	4E-19		0.023613652	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr17	57561598	57561599	rs377422139	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q22	NR	rs377422139-C	0.01394	8E-9	(TMSB10)	0.01607	NR unit increase	Illumina [1671387] (imputed)	N
1024	chr17	57561598	57561599	rs377422139	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q22	NR	rs377422139-C	0.01394	2E-10	(MAP4)	0.02317	NR unit increase	Illumina [1671387] (imputed)	N
1024	chr17	57564385	57564386	rs8076752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	17q22	LINC01476	rs8076752-?	NR	5E-8		0.02477	[0.016-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1024	chr17	57571032	57571033	rs9898641	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	17q22	NR	rs9898641-C	NR	4E-6		0.2032	[0.11-0.29] SD units increase	NR [10700000] (imputed)	N
1024	chr17	57578716	57578717	rs4968381	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.1	intergenic	rs4968381-T		1E-10		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1024	chr17	57582866	57582867	rs7222513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q23.1	NR	rs7222513-T	NR	2E-10		0.0278	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr17	57649754	57649755	rs77883876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.1	NR	rs77883876-C	NR	1E-9		0.0416	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1024	chr17	57649754	57649755	rs77883876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.1	NR	rs77883876-C	NR	1E-9		0.0414	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr17	57800387	57800388	rs11869269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs11869269-A	NR	4E-25		0.0354	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr17	57800387	57800388	rs11869269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs11869269-A	NR	9E-22		0.0328	[0.026-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr17	57800387	57800388	rs11869269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q23.1	NR	rs11869269-A	NR	1E-10		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr17	57800387	57800388	rs11869269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.1	NR	rs11869269-A	NR	5E-33		0.0391	[0.033-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr17	57801760	57801761	rs8081395	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q23.1	VMP1	rs8081395-A	0.5454	2E-23		0.03567578	[0.029-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57816756	57816757	rs8070345	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	17q23.1	VMP1	rs8070345-A	0.46	2E-23		1.12		Illumina [161311]	N
1026	chr17	57821429	57821430	rs8067354	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.1	VMP1	rs8067354-A		5E-22		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1026	chr17	57821429	57821430	rs8067354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q23.1	VMP1	rs8067354-A	0.2952	1E-9		0.02359833	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q23.1		rs11654074-C	NR	2E-38		0.0316	[0.027-0.036] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.5229	5E-18		0.03171436	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.5229	9E-18		0.03150329	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.5229	1E-17		0.03126701	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.5229	4E-21		0.03471461	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.5231	1E-9		0.02204341	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57825571	57825572	rs11654074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q23.1	VMP1	rs11654074-C	0.523	3E-18		0.0319584	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57826730	57826731	rs2665397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	17q23.1		rs2665397-C	0.455	1E-25				Affymetrix [10369434] (imputed)	N
1026	chr17	57826730	57826731	rs2665397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q23.1	VMP1	rs2665397-A	0.544931	2E-16		0.018684486	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr17	57830472	57830473	rs2777885	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	17q23.1		rs2777885-C	0.455	9E-21				Affymetrix [10369434] (imputed)	N
1026	chr17	57832390	57832391	rs2777899	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	17q23.1		rs2777899-T	0.453	6E-14				Affymetrix [10369434] (imputed)	N
1026	chr17	57832390	57832391	rs2777899	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	17q23.1	TMEM49	rs2777899-?	NR	2E-8		1.0932546		Illumina [~ 460000] (imputed)	N
1026	chr17	57832390	57832391	rs2777899	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	17q23.1	TMEM49	rs2777899-?	NR	3E-8		1.0857763		Illumina [~ 460000] (imputed)	N
1026	chr17	57845623	57845624	rs2645477	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q23.1	VMP1	rs2645477-A	0.5214	8E-9		0.0179	[0.012-0.024] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr17	57845623	57845624	rs2645477	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	17q23.1	NR	rs2645477-A	0.4714	4E-6	(men)	0.0226	[0.013-0.032] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr17	57846515	57846516	rs61495451	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q23.1	NR	rs61495451-C	0.7935	3E-6	(EA)	0.0398	[0.023-0.056] unit decrease	Illumina [~ 11800000] (imputed)	N
1026	chr17	57850250	57850251	rs11650106	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	17q23.1	TMEM49	rs11650106-C	0.48	3E-9	(activity)	0.0092	[0.0039-0.0145] ng/ml decrease	Illumina [796174]	N
1026	chr17	57853213	57853214	rs2645466	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q23.1	VMP1	rs2645466-A		3E-6		0.18	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1026	chr17	57853213	57853214	rs2645466	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.1	VMP1	rs2645466-A		3E-8		0.152	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1026	chr17	57859209	57859210	rs2150879	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q23.1		rs2150879-G	0.44	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr17	57859209	57859210	rs2150879	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q23.1	NR	rs2150879-G	0.4438	3E-8				NR [9056863] (imputed)	N
1026	chr17	57859209	57859210	rs2150879	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q23.1	VMP1	rs2150879-G	NR	4E-31		1.1163	NR	Affymetrix, Illumina [8278136] (imputed)	N
1026	chr17	57861500	57861501	rs56251713	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.1	VMP1	rs56251713-A	0.6235	1E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix [18391927] (imputed)	N
1026	chr17	57866166	57866166	rs10640460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q23.1	VMP1	rs10640460-TAA	0.220193	1E-24		0.027701234	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57866166	57866166	rs10640460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q23.1	VMP1	rs10640460-TAA	0.220231	3E-21		0.025547646	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57869815	57869816	rs117517139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.1		rs117517139-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q23.1		rs2665405-A	NR	2E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q23.1	VMP1	rs2665405-A	0.549948	2E-64		0.037438232	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q23.1	VMP1	rs2665405-A	0.549946	2E-42		0.030222293	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q23.1	VMP1	rs2665405-G	0.450064	2E-43		0.032442328	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs2665405-A	0.504866	2E-81				Affymetrix, Illumina [24649327] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q23.1	NR	rs2665405-A	0.547743	6E-82		0.035373	[0.032-0.039] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs2665405-A	0.517184	3E-50				Affymetrix, Illumina [23114412] (imputed)	N
1026	chr17	57875291	57875292	rs2665405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q23.1	NR	rs2665405-A	0.54844	7E-53		0.02951	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1026	chr17	57875553	57875554	rs2645492	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q23.1	NR	rs2645492-G	NR	2E-6		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr17	57875553	57875554	rs2645492	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q23.1	NR	rs2645492-G	NR	2E-8		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr17	57875553	57875554	rs2645492	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q23.1	NR	rs2645492-G	0.792	2E-7	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1026	chr17	57879609	57879610	rs2777895	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q23.1		rs2777895-A	0.45	2E-36				Affymetrix [10369434] (imputed)	N
1026	chr17	57879609	57879610	rs2777895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q23.1		rs2777895-?	NR	4E-55				NR [~ 8900000] (imputed)	N
1026	chr17	57882673	57882674	rs7216675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q23.1	VMP1	rs7216675-C	0.079107	4E-39		0.054091204	[0.046-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57884867	57884868	rs73315284	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q23.1		rs73315284-A	0.921	3E-18				Affymetrix [10369434] (imputed)	N
1026	chr17	57885708	57885709	rs7212590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q23.1	VMP1	rs7212590-T	0.079273	6E-30		0.049574252	[0.041-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57885708	57885709	rs7212590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q23.1	VMP1	rs7212590-T	0.0797	4E-19		0.05853947	[0.046-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57885708	57885709	rs7212590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q23.1	VMP1	rs7212590-T	0.0797	2E-30		0.0752735	[0.062-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57885708	57885709	rs7212590	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q23.1	VMP1	rs7212590-T	0.0797	5E-15		0.05144283	[0.039-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57892639	57892640	rs2173120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q23.1		rs2173120-T	NR	9E-26		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1026	chr17	57892828	57892829	rs115869798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	17q23.1		rs115869798-A	0.462146	3E-10		0.0197717	[0.014-0.026] unit decrease	Illumina [13478961] (imputed)	N
1026	chr17	57894458	57894459	rs4257266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	17q23.1		rs4257266-G	0.418947	8E-10		0.0191001	[0.013-0.025] unit increase	Illumina [13478948] (imputed)	N
1026	chr17	57894458	57894459	rs4257266	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	17q23.1	VMP1	rs4257266-?	NR	3E-8		0.02417	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1026	chr17	57895724	57895725	rs143341655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	17q23.1		rs143341655-G	NR	1E-12		0.7036	[0.51-0.9] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
1026	chr17	57901651	57901652	rs12938273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q23.1	VMP1	rs12938273-A	0.555171	4E-67		0.04441455	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57904301	57904302	rs115624974	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	17q23.1	VMP1	rs115624974-A	0.028	4E-6		1.01	[1.03-90.9]	Affymetrix [up to 27494467] (imputed)	N
1026	chr17	57906287	57906288	rs1292065	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q23.1	VMP1	rs1292065-C	0.290753	3E-10		0.0137989	[0.0095-0.0181] unit increase	Affymetrix [NR] (imputed)	N
1026	chr17	57906287	57906288	rs1292065	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q23.1	VMP1	rs1292065-?	NR	2E-9		0.0174	[0.012-0.022] unit increase	Affymetrix [5701386] (imputed)	N
1026	chr17	57907767	57907768	rs1292063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q23.1		rs1292063-A	NR	8E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1026	chr17	57911229	57911230	rs1292061	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	17q23.1	VMP1	rs1292061-G	0.5556	9E-10		0.02146964	[0.015-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57914080	57914080	rs5821283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.1	VMP1	rs5821283-GT	NR	4E-8		0.017712	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1026	chr17	57917620	57917621	rs182811044	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q23.1		rs182811044-T	0.99	5E-9				NR [NR] (imputed)	N
1026	chr17	57917620	57917621	rs182811044	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	17q23.1		rs182811044-T	0.99	2E-8		1.67	[1.08-2.26] unit increase	NR [NR] (imputed)	N
1026	chr17	57926391	57926392	rs11332131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	17q23.1		rs11332131-G	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1026	chr17	57926391	57926392	rs11332131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	17q23.1	RNU6-450P	rs11332131-G	0.444097	7E-10		0.0138519965	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57926391	57926392	rs11332131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q23.1	RNU6-450P	rs11332131-G	0.444087	9E-32		0.026274797	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57926391	57926392	rs11332131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	17q23.1	RNU6-450P	rs11332131-G	0.4427	2E-39		0.04745395	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57926910	57926911	rs1292071	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q23.1		rs1292071-C	0.44	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1026	chr17	57927426	57927427	rs112721625	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q23.1	RNU6-450P	rs112721625-A	0.3845	6E-11		0.02432459	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1026	chr17	57928289	57928290	rs1292069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs1292069-C	0.476859	7E-32				Affymetrix, Illumina [23472807] (imputed)	N
1026	chr17	57928289	57928290	rs1292069	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q23.1	NR	rs1292069-C	0.449582	3E-32		0.022504	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1026	chr17	57929534	57929535	rs1295927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q23.1	RNU6-450P	rs1295927-G	0.447242	1E-20		0.020846477	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57929534	57929535	rs1295927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs1295927-G	0.475456	4E-31				Affymetrix, Illumina [19905671] (imputed)	N
1026	chr17	57930645	57930646	rs1292067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q23.1		rs1292067-T	NR	9E-19		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1026	chr17	57930645	57930646	rs1292067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q23.1		rs1292067-T	NR	5E-17		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1026	chr17	57930645	57930646	rs1292067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q23.1		rs1292067-T	0.374422	4E-12		0.016120486	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr17	57930645	57930646	rs1292067	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q23.1	NR	rs1292067-G	0.625446	1E-24		0.0210831	[0.017-0.025] unit increase	NR [NR]	N
1026	chr17	57933507	57933508	rs2526359	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q23.1	CENPW	rs2526359-?		2E-8				NR [7428630] (imputed)	N
1027	chr17	57934653	57934654	rs58681483	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q23.1	VMP1, TUBD1	rs58681483-A	0.918	1E-9		1.0358268		Affymetrix [11880941] (imputed)	N
1027	chr17	57934653	57934654	rs58681483	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	17q23.1	MIR21, TUBD1	rs58681483-?	NR	1E-12		0.06207	[0.045-0.079] unit decrease novel	Illumina [6108953] (imputed)	N
1027	chr17	57936437	57936438	rs7223057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	17q23.1		rs7223057-C	0.122416	1E-14		0.0519587	[0.039-0.065] unit decrease	Illumina [13471440] (imputed)	N
1027	chr17	57938040	57938041	rs1292041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q23.1	TUBD1	rs1292041-G	0.528704	1E-13		0.016625343	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr17	57938498	57938499	rs41363245	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	17q23.1	NR	rs41363245-G	0.875493	2E-14		0.05559	[0.041-0.07] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1027	chr17	57942584	57942585	rs2526358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs2526358-A	0.805492	6E-39				Affymetrix, Illumina [22063850] (imputed)	N
1027	chr17	57942584	57942585	rs2526358	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q23.1	NR	rs2526358-A	0.804228	5E-41		0.031907	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1027	chr17	57942584	57942585	rs2526358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q23.1		rs2526358-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1027	chr17	57942584	57942585	rs2526358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q23.1		rs2526358-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1027	chr17	57949321	57949321	rs548349872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	17q23.1		rs548349872-A,rs548349872-A	0.796486	5E-16		0.0412958	[0.031-0.051] unit increase	NR [11722792] (imputed)	N
1027	chr17	57949321	57949321	rs548349872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	17q23.1		rs548349872-A,rs548349872-A	0.796486	5E-16		0.0412958	[0.031-0.051] unit increase	NR [11722792] (imputed)	N
1027	chr17	57950619	57950619	rs201184664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q23.1	TUBD1	rs201184664-TTG	0.206492	3E-33		0.032956854	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1027	chr17	57950619	57950619	rs201184664	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q23.1	TUBD1	rs201184664-TTG	NR	1E-13		0.0342407	[0.025-0.044] unit increase	Affymetrix [16832071] (imputed)	N
1027	chr17	57955070	57955071	rs1292048	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q23.1	TUBD1	rs1292048-G	0.4363	2E-15		0.02811485	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1027	chr17	57955165	57955166	rs1292047	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q23.1	NR	rs1292047-?	NR	3E-6		4.658	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1027	chr17	57957841	57957842	rs9905543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs9905543-C	0.226483	2E-12				Affymetrix, Illumina [19872809] (imputed)	N
1027	chr17	57957887	57957888	rs1292059	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q23.1	TUBD1	rs1292059-A	0.2107	2E-9		0.02640463	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1027	chr17	57957981	57957982	rs1292058	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.1	TUBD1	rs1292058-A	0.2771	7E-10		0.2774	[0.19-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
1027	chr17	57959046	57959047	rs1292056	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	17q23.1	TUBD1, RPS6KB1	rs1292056-T	0.44	7E-8		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1027	chr17	57959886	57959887	rs4047777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q23.1	TUBD1	rs4047777-T	0.238102	6E-14		0.019462906	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr17	57959886	57959887	rs4047777	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q23.1	NR	rs4047777-T	0.239489	3E-15		0.018348	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1027	chr17	57959886	57959887	rs4047777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q23.1		rs4047777-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1027	chr17	57963536	57963537	rs1292053	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.1	TUBD1	rs1292053-G		3E-18		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1027	chr17	57963536	57963537	rs1292053	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	17q23.1	TUBD1, RPS6KB1, RP11-178C3.1, RNFT1, VMP1	rs1292053-?		1E-6				Illumina [9560910] (imputed)	N
1027	chr17	57963536	57963537	rs1292053	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q23.1	NR	rs1292053-G	0.442	1E-12	(EA)	1.0726192	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1027	chr17	57963536	57963537	rs1292053	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q23.1	NR	rs1292053-G	0.442	2E-14	(EA)	1.0954721	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1027	chr17	57963536	57963537	rs1292053	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	17q23.1	RPS6KB1, TUBD1	rs1292053-G	0.446	9E-13		1.076	[1.045-1.106]	Affymetrix, Illumina [1230000] (imputed)	N
1027	chr17	57965299	57965300	rs11361835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q23.1	TUBD1	rs11361835-C	0.278328	1E-9		0.015415646	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1027	chr17	57968736	57968742	rs60391241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q23.1		rs60391241-A	NR	1E-26		0.0272	[0.022-0.032] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1027	chr17	57979871	57979872	rs9910598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs9910598-A	NR	7E-25		0.0351	[0.028-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57979871	57979872	rs9910598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs9910598-A	NR	1E-22		0.0335	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57979871	57979872	rs9910598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.1	NR	rs9910598-A	NR	4E-36		0.0409	[0.034-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	4E-9		0.0176	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	3E-20		0.0276	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	3E-11		0.0207	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	9E-14		0.0228	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	7E-11		0.0212	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr17	57988606	57988607	rs2526353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q23.1	NR	rs2526353-T	NR	2E-12		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr17	57989556	57989557	rs1292035	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q23.1	RPS6KB1	rs1292035-?	NR	3E-11	(subset analysis)			Illumina [130052]	N
1027	chr17	57989859	57989860	rs1292034	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	17q23.1	RPS6KB1	rs1292034-?	NR	3E-8		1.08613		Illumina [~ 460000] (imputed)	N
1027	chr17	57997374	57997375	rs118068040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs118068040-G	NR	1E-10		0.0464	[0.032-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	57997374	57997375	rs118068040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q23.1	NR	rs118068040-G	NR	5E-10		0.0451	[0.031-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr17	58000232	58000233	rs2645463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.1	NR	rs2645463-T	0.401074	9E-17				Affymetrix, Illumina [24332387] (imputed)	N
1027	chr17	58000232	58000233	rs2645463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q23.1	NR	rs2645463-T	0.344079	4E-16		0.01699	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1027	chr17	58003357	58003358	rs180531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q23.1		rs180531-A	NR	6E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1027	chr17	58004928	58004929	rs60167359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q23.1		rs60167359-A	NR	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1027	chr17	58005749	58005749	rs34381780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	17q23.1	RPS6KB1	rs34381780-CT	NR	9E-9		0.0185753	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1027	chr17	58024274	58024275	rs180515	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q23.1	RPS6KB1	rs180515-G	NR	9E-8		1.09	[1.08-1.11]	Illumina [465434]	N
1027	chr17	58024323	58024324	rs1051424	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q23.1	RPS6KB1	rs1051424-A	0.8238	1E-9		0.015	[0.01-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1027	chr17	58024323	58024324	rs1051424	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q23.1	RPS6KB1, NDUFB8P2, TUBD1, RNFT1	rs1051424-G	0.127	3E-6	(Urinary free epinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
1027	chr17	58046075	58046076	rs12453125	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.1	RNFT1-DT	rs12453125-G	0.4698	5E-9		0.1554	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1027	chr17	58046245	58046246	rs76236917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q23.1		rs76236917-T	NR	8E-18		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1027	chr17	58052123	58052124	rs143669204	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q23.1		rs143669204-A	0.96	4E-13				Affymetrix [10369434] (imputed)	N
1027	chr17	58059122	58059123	rs4968339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q23.1	RP11-178C3.2, TBC1D3P1-DHX40P1, DHX40P1	rs4968339-A	0.840031	2E-11		0.02425838	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1028	chr17	58091049	58091050	rs541618678	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	17q23.1	Intergenic	rs541618678-?		5E-6		87.8	[50.17-125.43] unit decrease	Illumina [~ 10000000] (imputed)	N
1028	chr17	58139304	58139305	rs78524350	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HEATR6	rs78524350-?	NR	3E-8		1.34421	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1031	chr17	58508617	58508618	rs3760332	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	17q23.2	USP32, APPBP2	rs3760332-C	0.082049	5E-6		0.036857	[0.021-0.053] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1031	chr17	58573753	58573754	rs117465978	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	17q23.2	APPBP2	rs117465978-T	0.0056	7E-6		0.28	[0.16-0.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1032	chr17	58602130	58602131	rs142122062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q23.2	APPBP2	rs142122062-A	0.00303200000000003	7E-9		0.144498	[0.1-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1032	chr17	58602130	58602131	rs142122062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q23.2	APPBP2	rs142122062-A	0.00303200000000003	3E-12		0.15365127	[0.11-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1032	chr17	58602130	58602131	rs142122062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs142122062-G	0.996956	8E-11				Affymetrix, Illumina [24246363] (imputed)	N
1032	chr17	58602130	58602131	rs142122062	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs142122062-G	0.996956	4E-15				Affymetrix, Illumina [20825802] (imputed)	N
1032	chr17	58609207	58609208	rs138681421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q23.2		rs138681421-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1032	chr17	58655357	58655357	rs545164273	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs545164273-?	NR	1E-22		0.0955539	[0.076-0.115] unit decrease	Affymetrix [20259828] (imputed)	N
1032	chr17	58681551	58681552	rs76907962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.2	NR	rs76907962-A	NR	2E-10		0.0465	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr17	58739669	58739670	rs7214509	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q23.2	PPM1D	rs7214509-T	0.1559	6E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1033	chr17	58755166	58755167	rs573536922	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs573536922-?	NR	6E-23		0.183094	[0.14-0.22] unit decrease	Affymetrix [20259828] (imputed)	N
1033	chr17	58755261	58755262	rs117023868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q23.2	BCAS3	rs117023868-A	0.0714550000000001	3E-9		0.0255085	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1033	chr17	58755261	58755262	rs117023868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q23.2		rs117023868-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1033	chr17	58762944	58762945	rs111932172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q23.2	NR	rs111932172-T	NR	1E-31		0.0699	[0.058-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr17	58762944	58762945	rs111932172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs111932172-T	NR	1E-11		0.0387	[0.028-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr17	58762944	58762945	rs111932172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs111932172-T	NR	6E-12		0.0394	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr17	58824616	58824617	rs34431714	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	17q23.2	NR	rs34431714-G		6E-6		0.3362	[0.19-0.48] SD units increase	NR [10700000] (imputed)	N
1033	chr17	58837700	58837701	rs7503383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q23.2	NR	rs7503383-G	NR	8E-32		0.0527	[0.044-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr17	58837700	58837701	rs7503383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs7503383-G	NR	4E-15		0.0336	[0.025-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1033	chr17	58837700	58837701	rs7503383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.2	NR	rs7503383-G	NR	3E-15		0.0339	[0.025-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr17	58837700	58837701	rs7503383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs7503383-G	NR	2E-15		0.0342	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1033	chr17	58839164	58839165	rs139740585	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q23.2	NR	rs139740585-C		5E-8		0.1	[0.061-0.139] unit increase	NR [NR]	N
1034	chr17	58852268	58852269	rs28462342	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.2	BCAS3	rs28462342-C		1E-11		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1034	chr17	58857122	58857123	rs187961334	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	17q23.2		rs187961334-T	0.0069	6E-25		0.7795	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1034	chr17	58863914	58863915	rs7210311	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs7210311-?	NR	2E-14		0.10812	[0.078-0.138] unit decrease	Affymetrix [20259828] (imputed)	N
1034	chr17	58906854	58906854	rs538508139	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs538508139-?	NR	3E-87		0.0597101	[0.054-0.066] unit decrease	Affymetrix [20259828] (imputed)	N
1034	chr17	58915260	58915261	rs9903801	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q23.2	BCAS3	rs9903801-C	0.1554	2E-36		0.0047	[0.0039-0.0055] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1034	chr17	58916058	58916059	rs9911155	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q23.2	BCAS3	rs9911155-G	0.857	2E-12		0.136	[0.097-0.175] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1034	chr17	58917398	58917399	rs9907229	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q23.2	BCAS3	rs9907229-T	0.8461	4E-30		0.0049	[0.0039-0.0059] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1034	chr17	58921973	58921974	rs4456565	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	17q23.2		rs4456565-?	NR	3E-8		0.0673	[0.041-0.094] unit decrease	NR [NR] (imputed)	N
1034	chr17	58930418	58930419	rs9910365	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q23.2	BCAS3	rs9910365-A	0.8568	3E-12		0.136	[0.097-0.175] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1034	chr17	58931384	58931385	rs8073120	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	17q23.2	BCAS3	rs8073120-A	0.222	4E-12		0.464	[0.33-0.6] unit increase	Affymetrix [NR] (imputed)	N
1034	chr17	58934473	58934474	rs4287628	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q23.2	NR	rs4287628-?	NR	3E-6				Affymetrix [NR]	N
1034	chr17	58950790	58950791	rs1036902	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q23.2	BCAS3	rs1036902-T	0.8442	2E-11		0.2273	[0.16-0.29] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1034	chr17	58950790	58950791	rs1036902	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs1036902-?	NR	6E-88		0.0565053	[0.051-0.062] unit decrease	Affymetrix [20259828] (imputed)	N
1034	chr17	58950790	58950791	rs1036902	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q23.2	BCAS3	rs1036902-T	0.853298	1E-12	(men)	0.0463142	[0.032-0.06] unit decrease	NR [17166351] (imputed)	N
1034	chr17	58950790	58950791	rs1036902	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q23.2	BCAS3	rs1036902-T	0.852784	2E-31		0.0521947	[0.043-0.062] unit decrease	NR [17166351] (imputed)	N
1034	chr17	58950790	58950791	rs1036902	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q23.2	BCAS3	rs1036902-T	0.852336	1E-20	(women)	0.0586922	[0.046-0.071] unit decrease	NR [17166351] (imputed)	N
1034	chr17	58959335	58959336	rs138760546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	17q23.2		rs138760546-C	0.102361	7E-10		0.0357842	[0.024-0.047] unit increase	Illumina [13478928] (imputed)	N
1034	chr17	58966537	58966538	rs7224438	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	17q23.2	BCAS3	rs7224438-G		4E-7	(AA)			Illumina [NR]	N
1034	chr17	58971730	58971731	rs79771286	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	BCAS3	rs79771286-A	0.8345	1E-9		0.2214	[0.15-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1035	chr17	58991024	58991025	rs7214227	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	17q23.2	BCAS3	rs7214227-T	0.16	5E-11		1.07	[1.04-1.11]	Illumina [5167567] (imputed)	N
1035	chr17	59013487	59013488	rs7212798	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	17q23.2	BCAS3	rs7212798-C	0.15	8E-6	(additive model)	1.07	[1.04-1.1]	Affymetrix, Illumina [8600000] (imputed)	N
1035	chr17	59013487	59013488	rs7212798	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	17q23.2	BCAS3	rs7212798-C	0.15	2E-8	(additive model)	1.08	[1.05-1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1035	chr17	59017024	59017025	rs8080784	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q23.2	BCAS3	rs8080784-T	0.8458	2E-9		0.053	[0.036-0.07] unit decrease	NR [8041861] (imputed)	N
1035	chr17	59019432	59019432	rs142016905	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs142016905-?	NR	2E-91		0.057787	[0.052-0.064] unit decrease	Affymetrix [20259828] (imputed)	N
1035	chr17	59023997	59023998	rs57043009	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	BCAS3	rs57043009-C	0.85106	2E-48		0.04326	[0.037-0.049] unit decrease	NR [13737936] (imputed)	N
1035	chr17	59023997	59023998	rs57043009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs57043009-?	NR	1E-94				NR [~ 8900000] (imputed)	N
1035	chr17	59083291	59083292	rs150014520	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q23.2	BCAS3	rs150014520-?		7E-7				Illumina [4322238] (imputed)	N
1036	chr17	59141678	59141679	rs73324844	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	17q23.2		rs73324844-A	0.122	2E-6		1.22	[1.12-1.32]	Illumina [7199488] (imputed)	N
1036	chr17	59160226	59160227	rs77897572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs77897572-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1036	chr17	59160226	59160227	rs77897572	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs77897572-?	NR	6E-11		0.0650765	[0.045-0.085] unit increase	Affymetrix [20259828] (imputed)	N
1036	chr17	59161645	59161646	rs2052074	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q23.2	BCAS3	rs2052074-G	0.187117	2E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1036	chr17	59196064	59196065	rs1012383	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs1012383-?	NR	1E-67		0.0463513	[0.041-0.052] unit increase	Affymetrix [20259828] (imputed)	N
1036	chr17	59223208	59223209	rs138852655	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	BCAS3	rs138852655-C	0.961161	1E-15		0.0436715	[0.033-0.054] unit decrease	NR [13737936] (imputed)	N
1036	chr17	59232364	59232365	rs11655024	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	17q23.2	BCAS3	rs11655024-?	NR	9E-10		0.0829359	[0.056-0.109] unit decrease	Illumina [19707525] (imputed)	N
1036	chr17	59232364	59232365	rs11655024	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	17q23.2	NR	rs11655024-?	NR	8E-10		0.0337	[0.023-0.044] unit increase novel	Illumina [6108953] (imputed)	N
1036	chr17	59232364	59232365	rs11655024	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	17q23.2	NR	rs11655024-?	NR	5E-9		0.03128	[0.021-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1036	chr17	59236765	59236766	rs1476099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	17q23.2		rs1476099-A	NR	5E-9		0.082	[0.055-0.109] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1036	chr17	59237012	59237013	rs1476098	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q23.2	BCAS3	rs1476098-?	NR	3E-16		0.051017	[0.039-0.063] unit decrease	Illumina [4804024] (imputed)	N
1036	chr17	59237012	59237013	rs1476098	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q23.2	BCAS3	rs1476098-A	0.2122	9E-10		0.0443	[0.03-0.058] unit increase	Affymetrix [at least 7947838] (imputed)	N
1036	chr17	59238156	59238157	rs72832563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.2	NR	rs72832563-T	NR	7E-10		0.0397	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1036	chr17	59238251	59238252	rs191380121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q23.2	NR	rs191380121-T	0.002366	2E-12		0.169223	[0.12-0.22] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1036	chr17	59239220	59239221	rs11868441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.2		rs11868441-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1036	chr17	59239220	59239221	rs11868441	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	17q23.2	BCAS3	rs11868441-G	0.75	2E-9		0.0059	[0.0039-0.0079] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1036	chr17	59239753	59239754	rs11079418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	17q23.2		rs11079418-G	0.743029	3E-28		0.042511	[0.035-0.05] unit increase	Illumina [13478792] (imputed)	N
1036	chr17	59240472	59240473	rs6504021	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q23.2	BCAS3	rs6504021-T	0.77	2E-23		0.0082	[0.0066-0.0098] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1036	chr17	59240686	59240686	rs753645751	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q23.2	NR	rs753645751-G	0.797332	3E-9		0.00822455	[0.0055-0.011] unit increase	Affymetrix [16582621] (imputed)	N
1036	chr17	59240686	59240686	rs753645751	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q23.2	NR	rs753645751-G	0.797332	4E-10		0.00915262	[0.0062-0.0121] unit increase	Affymetrix [16582614] (imputed)	N
1036	chr17	59241154	59241155	rs8073894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	17q23.2		rs8073894-C	0.741155	4E-8		0.020994	[0.014-0.028] unit decrease	Illumina [13477770] (imputed)	N
1036	chr17	59241154	59241155	rs8073894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q23.2		rs8073894-C	NR	6E-41		0.0314	[0.027-0.036] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1036	chr17	59241154	59241155	rs8073894	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.2	BCAS3	rs8073894-T		1E-20		0.026	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1036	chr17	59241154	59241155	rs8073894	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	17q23.2	BCAS3	rs8073894-?	NR	2E-26		0.04336	[0.035-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1036	chr17	59241468	59241469	rs8074363	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	17q23.2		rs8074363-T	0.225358	2E-12		0.0317264	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
1036	chr17	59241468	59241469	rs8074363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q23.2	NR	rs8074363-C	0.7746230000000001	6E-11		0.00644449	[0.0044-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
1036	chr17	59241468	59241469	rs8074363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q23.2	NR	rs8074363-C	0.7746230000000001	4E-10		0.00705371	[0.0048-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1036	chr17	59242763	59242764	rs8079951	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q23.2	BCAS3	rs8079951-A	0.787	3E-9		0.048	[0.032-0.064] unit decrease	Affymetrix [7947838] (imputed)	N
1036	chr17	59242913	59242914	rs8080123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q23.2	BCAS3	rs8080123-G	0.816323	8E-15		0.022314608	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1036	chr17	59242913	59242914	rs8080123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q23.2	BCAS3	rs8080123-G	0.816333	1E-18		0.025190847	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1036	chr17	59242913	59242914	rs8080123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q23.2	BCAS3	rs8080123-G	0.816305	6E-20		0.026179858	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1036	chr17	59242913	59242914	rs8080123	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs8080123-G	0.792	2E-26		0.63	[0.41-0.85] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1036	chr17	59242913	59242914	rs8080123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q23.2		rs8080123-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1037	chr17	59247326	59247327	rs11079419	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	17q23.2	BCAS3	rs11079419-T	0.2	2E-31		0.03	unit increase	Affymetrix [8928767] (imputed)	N
1037	chr17	59247675	59247676	rs11871955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q23.2		rs11871955-T	NR	2E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1037	chr17	59248735	59248735	rs398119933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q23.2		rs398119933-GA	NR	3E-8		0.0609	[0.04-0.082] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1037	chr17	59250810	59250810	rs35764675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q23.2	BCAS3	rs35764675-CA	0.7388	3E-13		0.020252148	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1037	chr17	59250810	59250810	rs35764675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q23.2	BCAS3	rs35764675-CA	0.738805	5E-17		0.023156911	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1037	chr17	59250853	59250854	rs4640251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs4640251-G	0.784607	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1037	chr17	59254882	59254883	rs12951741	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	17q23.2	BCAS3	rs12951741-G	0.22	8E-16		0.022	[0.016-0.028] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
1037	chr17	59259235	59259235	rs35031042	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q23.2	NR	rs35031042-I	0.788041	1E-15		0.020159	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1037	chr17	59262039	59262040	rs2204928	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	17q23.2	BCAS3	rs2204928-C	0.21	2E-13		0.0078	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1037	chr17	59262039	59262040	rs2204928	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	17q23.2	BCAS3	rs2204928-C	0.21	2E-9		0.00647	[0.0044-0.0086] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1037	chr17	59262039	59262040	rs2204928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q23.2		rs2204928-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1037	chr17	59269554	59269555	rs9893705	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 49)	4,680 European ancestry individuals	3,566 European ancestry individuals	17q23.2		rs9893705-T	0.188572065	8E-12				Illumina [7417619] (imputed)	N
1037	chr17	59273264	59273265	rs11867840	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	17q23.2	BCAS3	rs11867840-G	NR	2E-13		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1037	chr17	59273264	59273265	rs11867840	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	17q23.2	BCAS3	rs11867840-G	NR	1E-13	(EA)	0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1037	chr17	59282507	59282508	rs723835	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q23.2	BCAS3	rs723835-?	NR	5E-16		0.6195	[0.46-0.78] unit increase	Affymetrix [11100000] (imputed)	N
1037	chr17	59286262	59286263	rs11651885	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	17q23.2		rs11651885-G	0.21	3E-8		0.031	L increase	Affymetrix [NR] (imputed)	N
1037	chr17	59286262	59286263	rs11651885	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	17q23.2	BCAS3	rs11651885-G	0.23	4E-11		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1037	chr17	59286262	59286263	rs11651885	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	17q23.2	BCAS3	rs11651885-G	0.23	2E-12	(EA)	0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1037	chr17	59286643	59286644	rs8068952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q23.2	BCAS3	rs8068952-C	0.7839	1E-22		0.0285	[0.023-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1037	chr17	59286643	59286644	rs8068952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q23.2	BCAS3	rs8068952-C	0.7839	1E-6		0.0139	[0.0082-0.0196] unit decrease	Affymetrix [19819130] (imputed)	N
1037	chr17	59286643	59286644	rs8068952	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	17q23.2	BCAS3	rs8068952-G	0.228	1E-9		1.07	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1037	chr17	59286643	59286644	rs8068952	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	17q23.2	BCAS3	rs8068952-G	0.23	3E-8		0.01	[0.008-0.016] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1037	chr17	59288405	59288406	rs8070692	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs8070692-?	NR	4E-43		0.0377066	[0.032-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
1037	chr17	59292435	59292436	rs72832584	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		17q23.2	BCAS3	rs72832584-?	0.05	1E-11		0.3	unit decrease	Illumina [NR] (imputed)	N
1037	chr17	59306036	59306037	rs7223401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q23.2	NR	rs7223401-G	NR	2E-20		0.0311	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1037	chr17	59306036	59306037	rs7223401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs7223401-G	NR	4E-26		0.0338	[0.028-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1037	chr17	59306036	59306037	rs7223401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.2	NR	rs7223401-G	NR	2E-19		0.0288	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1037	chr17	59306036	59306037	rs7223401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs7223401-G	NR	2E-26		0.0341	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1037	chr17	59312286	59312287	rs4968539	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	17q23.2	BCAS3	rs4968539-C	0.27	2E-7	(female)	0.1	[0.061-0.139] unit increase	Illumina [11973598] (imputed)	N
1037	chr17	59323042	59323043	rs17513268	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q23.2	BCAS3	rs17513268-G	0.084	7E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1037	chr17	59338573	59338574	rs1157994	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q23.2	BCAS3	rs1157994-G	0.96250816380529	2E-13		0.0989	[0.073-0.125] SD increase	Illumina [22400000] (imputed)	N
1037	chr17	59338573	59338574	rs1157994	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	17q23.2	BCAS3	rs1157994-A	0.05	4E-9		0.083	[0.056-0.11] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1037	chr17	59366154	59366155	rs7215879	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	BCAS3	rs7215879-G	0.858748	2E-11		0.0177186	[0.013-0.023] unit decrease	NR [13737936] (imputed)	N
1038	chr17	59379737	59379738	rs3785859	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	17q23.2	BCAS3	rs3785859-T	0.4378	1E-6	(O'Connor Slope)	0.029	[NR] unit increase	Illumina [546355]	N
1038	chr17	59391378	59391379	rs3785856	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	17q23.2	BCAS3	rs3785856-A	0.2	1E-13				Affymetrix, Illumina [8002429] (imputed)	N
1038	chr17	59391440	59391441	rs3785855	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	17q23.2	BCAS3	rs3785855-T	0.205	4E-16		0.127	[0.096-0.158] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1038	chr17	59392063	59392064	rs1558225	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	17q23.2	BCAS3	rs1558225-?	NR	1E-13		0.116	[0.085-0.147] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1038	chr17	59396448	59396449	rs10853029	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	17q23.2	NR	rs10853029-T		5E-11		0.12	[0.081-0.159] unit increase	NR [NR]	N
1038	chr17	59435832	59435833	rs72834650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs72834650-A	NR	1E-12		0.0591	[0.043-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59435832	59435833	rs72834650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs72834650-A	NR	3E-12		0.0584	[0.042-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59441647	59441648	rs4968555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs4968555-A	NR	3E-10		0.0331	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59441647	59441648	rs4968555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs4968555-A	NR	1E-10		0.0341	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59447368	59447369	rs11653176	25967671	Li C	2015-05-13	Nat Commun	Genome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.	Gout	1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls	3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls	17q23.2	BCAS3	rs11653176-?	0.528	1E-13		1.27	[NR]	Affymetrix [603505]	N
1038	chr17	59447983	59447984	rs7217891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	17q23.2	NR	rs7217891-G	0.486673	8E-11		0.024679	[0.017-0.032] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
1038	chr17	59448944	59448945	rs1010269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	17q23.2		rs1010269-G	0.522822	2E-10		0.0201822	[0.014-0.026] unit decrease	Illumina [13478948] (imputed)	N
1038	chr17	59448944	59448945	rs1010269	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.2	BCAS3	rs1010269-A		4E-33		0.036	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1038	chr17	59448944	59448945	rs1010269	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	17q23.2	BCAS3	rs1010269-G	0.503	2E-9		1.24	[1.16-1.33]	Illumina [7206774] (imputed)	N
1038	chr17	59448944	59448945	rs1010269	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	17q23.2	BCAS	rs1010269-G	0.83	4E-15		1.13	[1.10-1.17]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1038	chr17	59448944	59448945	rs1010269	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q23.2	BCAS3, RP11-332H18.5	rs1010269-G	0.8304	6E-11		0.03139999	[0.022-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	17q23.2		rs11657044-T	0.166703	1E-21		0.0457161	[0.036-0.055] unit increase	NR [11722792] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q23.2		rs11657044-C	NR	3E-36		0.0263	[0.022-0.03] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	17q23.2		rs11657044-C	0.519597	1E-11		0.0217026	[0.015-0.028] unit decrease	Illumina [13479135] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q23.2		rs11657044-C	NR	6E-32		0.0239	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	17q23.2		rs11657044-C	0.519615	1E-9		0.0195086	[0.013-0.026] unit decrease	Illumina [13478961] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q23.2	NR	rs11657044-T	0.16	4E-22		0.0243	[0.019-0.029] unit decrease	NR [NR]	N
1038	chr17	59450104	59450105	rs11657044	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q23.2	BCAS3	rs11657044-T	0.173	5E-88		0.0075	[0.0065-0.0085] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1038	chr17	59450104	59450105	rs11657044	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	17q23.2	BCAS3	rs11657044-T	0.19	8E-22	(EA)	0.0115	[0.0091-0.0139] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1038	chr17	59450440	59450441	rs9905274	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	17q23.2	BCAS3	rs9905274-C	0.482	6E-9		1.37	[1.23-1.52]	Illumina [7206774] (imputed)	N
1038	chr17	59450440	59450441	rs9905274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q23.2		rs9905274-?	NR	2E-35				NR [~ 8900000] (imputed)	N
1038	chr17	59455474	59455475	rs145514852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs145514852-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	17q23.2		rs9895661-T	NR	5E-21		0.1165	[0.092-0.141] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	NR	3E-37		0.0273	[0.023-0.031] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	0.460593	3E-22		0.0339867	[0.027-0.041] unit increase	Illumina [13475706] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	NR	2E-117		0.0441	[0.04-0.048] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	0.461486	4E-29		0.0318951	[0.026-0.037] unit decrease	Illumina [13478778] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	17q23.2		rs9895661-T	NR	6E-9		0.0451	[0.03-0.06] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	NR	3E-35		0.0242	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q23.2		rs9895661-T	NR	3E-21		0.0256	[0.02-0.031] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	17q23.2	TBX2	rs9895661-?	NR	3E-11		0.0561	NR L increase	Affymetrix [9390170] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	NR	1E-18		0.0275	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	NR	4E-98		0.0655	[0.059-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	NR	1E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	NR	3E-100		0.0664	[0.06-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	NR	3E-15		0.0257	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.817	1E-14		0.063	[0.047-0.079] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q23.2	BCAS3	rs9895661-T	0.829089	3E-35		0.036350552	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q23.2	BCAS3	rs9895661-T	0.829083	1E-36		0.037164707	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q23.2	BCAS3	rs9895661-T	0.829103	8E-36		0.036689967	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.73861	2E-48				Affymetrix, Illumina [24332387] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.824697	5E-43		0.033979	[0.029-0.039] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.740668	1E-50				Affymetrix, Illumina [24653286] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.824475	3E-47		0.035619	[0.031-0.04] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.742571	5E-46				Affymetrix, Illumina [24558453] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q23.2	NR	rs9895661-T	0.824385	1E-43		0.034167	[0.029-0.039] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.5185	2E-8		0.0994	[0.065-0.134] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	17q23.2	BCAS3	rs9895661-C		5E-12		0.047	[0.033-0.061] mg/dl decrease	NR [NR] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q23.2	BCAS3	rs9895661-T	0.6742	8E-45		0.053	[0.046-0.06] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q23.2	BCAS3	rs9895661-T	0.4798	2E-23	(East Asian)	0.065	[0.052-0.078] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.8174	7E-23		0.050208	[0.04-0.06] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	17q23.2	NR	rs9895661-T	0.6723	1E-12	(women)	0.0396	[0.029-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	17q23.2	NR	rs9895661-T	0.6446	2E-27	(men)	0.0654	[0.054-0.077] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	17q23.2	BCAS3	rs9895661-T	0.74	2E-32		0.736	[0.61-0.86] unit increase	Affymetrix [NR] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.8219	1E-57	(EA)	0.0074	[0.0064-0.0084] unit increase	Affymetrix [NR] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.722	2E-57		0.0069	[0.0061-0.0077] unit increase	Affymetrix [NR] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q23.2	BCAS3	rs9895661-T	0.7223	1E-106		0.0069	[0.0061-0.0077] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.484	6E-14		0.0056	[0.0042-0.007] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	17q23.2	BCAS3	rs9895661-C	0.35	5E-7		1.0505306	[1.03-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	17q23.2	TBX2	rs9895661-C	0.4275	3E-50		14.916	NR z score decrease	Illumina [26237160] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.842	2E-9	(EA)	0.03214286	[0.022-0.043] unit increase	Illumina [1986983] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.4754	9E-23	(Japanese)	0.0443	[0.035-0.053] unit increase	Illumina [1986983] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.475	9E-23	(Japanese)	0.044	[0.034-0.054] unit increase	Illumina [5864938] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs9895661-?	NR	3E-47				Affymetrix, Illumina [at least 5248638] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Serum creatinine levels	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.462	8E-21		0.0108	[0.0081-0.0135] unit decrease	Illumina [6288024] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Estimated glomerular filtration rate	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	17q23.2	BCAS3	rs9895661-T	0.462	1E-20		0.0117	[0.0088-0.0146] unit increase	Illumina [6288024] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	17q23.2	BCAS3	rs9895661-?	NR	9E-21		0.04506	[0.036-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	17q23.2	BCAS3	rs9895661-?	NR	1E-28		0.04753	[0.039-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	17q23.2	BCAS3	rs9895661-?	NR	2E-25		0.04348	[0.035-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	17q23.2	BCAS3	rs9895661-?	NR	2E-9		0.03632	[0.024-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		17q23.2	BCAS3	rs9895661-T	NR	4E-21		0.0125	[0.01-0.015] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.8295	5E-12		0.03268689	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q23.2	BCAS3	rs9895661-T	0.8295	4E-11		0.03101525	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs9895661-C	NR	8E-14		1.003	[0.74-1.26] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs9895661-C	0.53	1E-6	(Japanese)	1.491	[0.89-2.1] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs9895661-C	0.45	3E-6	(Hispanic)	1.148	[0.67-1.62] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	17q23.2	BCAS3	rs9895661-T	NR	3E-22		0.0121	[0.0097-0.0145] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (sCR)	42,257 East Asian, South Asian, and South East Asian ancestry individuals	19,662 East Asian ancestry individuals	17q23.2	BCAS3	rs9895661-C	0.52	7E-11		0.0045	[0.0031-0.0059] mg/dl increase	Affymetrix, Illumina [2353587] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (eGRFcrea)	42,451 East Asian, South Asian, and South East Asian ancestry individuals	19,636 East Asian ancestry individuals	17q23.2	BCAS3	rs9895661-C	0.52	5E-11		0.0051	[0.0035-0.0067] ml/min/1.73m2 decrease	Affymetrix, Illumina [2353587] (imputed)	N
1038	chr17	59456588	59456589	rs9895661	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	17q23.2	BCAS3, TBX2, C17orf82	rs9895661-C	0.19	1E-15	(eGFRcrea)	0.01	[0.007-0.015] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1038	chr17	59462084	59462085	rs35775319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.2	BCAS3, RP11-332H18.5	rs35775319-A	NR	5E-9		0.0427558	[0.028-0.057] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59463238	59463239	rs10853030	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17q23.2	NR	rs10853030-?	NR	4E-6		0.200119	[0.11-0.29] unit decrease	NR [13958389] (imputed)	N
1038	chr17	59463238	59463239	rs10853030	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs10853030-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1038	chr17	59464099	59464100	rs34895486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs34895486-C	NR	6E-17		0.0256	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59464099	59464100	rs34895486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs34895486-C	NR	1E-17		0.0263	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59464155	59464157	rs376994272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.2	BCAS3, RP11-332H18.5	rs376994272-GTT	NR	5E-9		0.0253291	[0.017-0.034] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	17q23.2		rs2079742-C	0.527026745	6E-17		0.12520383	[0.096-0.155] unit decrease	Illumina [13429980] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	17q23.2		rs2079742-C	0.525912395	9E-15		0.859122	[0.826764699-0.892745645]	Illumina [8919992] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	17q23.2	BCAS3	rs2079742-T	0.824	6E-8		0.681	[0.43-0.93] unit increase	Affymetrix [NR] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	17q23.2	BCAS3	rs2079742-T	0.489	3E-16		1.14	[NR]	Illumina [6603247] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	17q23.2	BCAS3	rs2079742-C	0.18	9E-14	(Creatinine)	0.1	[0.08-0.12] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1038	chr17	59465696	59465697	rs2079742	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q23.2	BCAS3, C17orf82	rs2079742-T	0.85	1E-8		0.043	[0.027-0.059] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1038	chr17	59466700	59466701	rs11079428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q23.2	BCAS3	rs11079428-A	0.770793	1E-10		0.017176993	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1038	chr17	59466700	59466701	rs11079428	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q23.2	BCAS3	rs11079428-T	0.223194	2E-9		0.044247206	[0.03-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
1038	chr17	59468941	59468942	rs3785837	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q23.2	NR	rs3785837-G		2E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
1038	chr17	59468941	59468942	rs3785837	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q23.2	BCAS3, TBX2, NACA2	rs3785837-?		3E-21				Affymetrix, Illumina [NR] (imputed)	N
1038	chr17	59468941	59468942	rs3785837	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	17q23.2	BCAS3	rs3785837-G	0.228623	7E-9		0.05515666	[0.036-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
1038	chr17	59468941	59468942	rs3785837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q23.2		rs3785837-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1038	chr17	59470841	59470842	rs1132179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs1132179-G	NR	2E-25		0.0535	[0.044-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59470841	59470842	rs1132179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs1132179-G	NR	5E-26		0.0542	[0.044-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59471081	59471082	rs917533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.2	RP11-332H18.5, RP11-332H18.4	rs917533-A	NR	4E-11		0.0320783	[0.023-0.042] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59472056	59472057	rs2286526	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	17q23.2	LOC645722	rs2286526-T	0.325	1E-14		1.1235955	[NR]	Illumina [6603247] (imputed)	N
1038	chr17	59472056	59472057	rs2286526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.2		rs2286526-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1038	chr17	59472056	59472057	rs2286526	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q23.2	BCAS3, TBX2	rs2286526-T	0.6796	9E-6		0.0282	[0.016-0.041] unit increase	NR [8041861] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q23.2		rs2286525-A	NR	1E-11		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q23.2		rs2286525-A	0.563017418	6E-9		0.049158484	[0.033-0.066] unit increase	Illumina [13134967] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	BCAS3	rs2286525-G	0.732	4E-19		0.353	[0.28-0.43] mmHg increase	Affymetrix [NR] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	BCAS3	rs2286525-G	0.7332	3E-10		0.1853	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	NR	rs2286525-A	0.5564	2E-10	(East Asian)	0.4374	[0.3-0.57] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	NR	rs2286525-A	0.5564	3E-11	(East Asian)	0.3241	[0.23-0.42] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59472122	59472123	rs2286525	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	NR	rs2286525-A	0.5565	1E-10	(East Asian)	0.2805	[0.2-0.37] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59473315	59473316	rs117514972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs117514972-G	NR	3E-11		0.104	[0.073-0.135] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59473315	59473316	rs117514972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs117514972-G	NR	1E-11		0.1063	[0.076-0.137] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59473364	59473365	rs60261365	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q23.2	RP11-332H18.5, RP11-332H18.4	rs60261365-T	NR	3E-9		0.0241541	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59475807	59475807	rs112849193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	NA	RP11-332H18.5, RP11-332H18.4	rs112849193-T	NR	1E-16		0.0312767	[0.024-0.039] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59475807	59475807	rs112849193	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	NA		rs112849193-T	0.217128	2E-13		0.0831618	[0.061-0.105] decrease	Affymetrix [11014269] (imputed)	N
1038	chr17	59475887	59475888	rs2109019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17q23.2		rs2109019-C	NR	4E-10		0.0354	[0.024-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1038	chr17	59475887	59475888	rs2109019	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	17q23.2	TBX2	rs2109019-A	0.209	1E-22		0.087	[0.069-0.105] unit decrease	Affymetrix [12000000] (imputed)	N
1038	chr17	59475887	59475888	rs2109019	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	17q23.2	TBX2	rs2109019-A	0.209	2E-18		0.073	[0.055-0.091] unit decrease	Affymetrix [12000000] (imputed)	N
1038	chr17	59476065	59476066	rs62071306	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	17q23.2	TBX2, RP11-332H18.4, RP11-332H18.5	rs62071306-C	0.73843	2E-10		0.04454	[0.032-0.057] unit decrease	Illumina [24961484] (imputed)	N
1038	chr17	59476414	59476415	rs1476781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q23.2		rs1476781-C	NR	3E-14		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1038	chr17	59476414	59476415	rs1476781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q23.2		rs1476781-C	NR	4E-10		0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1038	chr17	59478775	59478776	rs2270114	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q23.2	NR	rs2270114-C	0.7336	9E-20		0.002299	[0.0018-0.0028] unit decrease	Affymetrix [NR] (imputed)	N
1038	chr17	59479579	59479580	rs887258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q23.2		rs887258-G	NR	1E-13		0.048	[0.035-0.061] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1038	chr17	59479579	59479580	rs887258	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	17q23.2	BCAS3	rs887258-C	0.278	3E-13		0.361	[0.18-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1038	chr17	59479579	59479580	rs887258	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	17q23.2	TBX2	rs887258-C	0.2195	6E-7	(EA)	0.0257	[0.016-0.035] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1038	chr17	59480333	59480334	rs59172073	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	17q23.2	TBX2	rs59172073-?	NR	7E-6		2.7027025		Illumina [6778521] (imputed)	N
1038	chr17	59480555	59480556	rs765488721	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	17q23.2	TBX2	rs765488721-C		4E-8	(additive)	71.17	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1038	chr17	59483765	59483766	rs8068318	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	TBX2	rs8068318-T	0.3674	3E-6	(Japanese)	0.2576	[0.15-0.37] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59483765	59483766	rs8068318	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	TBX2	rs8068318-T	0.3674	9E-6	(Japanese)	0.2206	[0.12-0.32] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59483765	59483766	rs8068318	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	17q23.2	TBX2	rs8068318-C	0.35	4E-17		0.42	[0.32-0.52] unit decrease	Illumina [247039]	N
1038	chr17	59483765	59483766	rs8068318	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	17q23.2	TBX2	rs8068318-C	0.350438930518754	2E-8		0.28276113	[0.18-0.38] unit decrease	Illumina [247039]	N
1038	chr17	59483765	59483766	rs8068318	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	17q23.2	TBX2	rs8068318-C	0.35	3E-18		0.26	[0.2-0.32] unit decrease	Illumina [247039]	N
1038	chr17	59483765	59483766	rs8068318	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q23.2	TBX2	rs8068318-T	0.6838	2E-17		0.4077	[0.31-0.5] mmHg increase	Illumina [242296]	N
1038	chr17	59483765	59483766	rs8068318	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q23.2	TBX2	rs8068318-T	0.6859	3E-7		0.1726	[0.11-0.24] mmHg increase	Illumina [242296]	N
1038	chr17	59483765	59483766	rs8068318	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q23.2	TBX2	rs8068318-T	0.6823	3E-12		6.959	z score increase	Illumina [242296]	N
1038	chr17	59483765	59483766	rs8068318	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	17q23.2	TBX2	rs8068318-T	0.702	3E-18		0.254	mmHg increase	Illumina [242296]	N
1038	chr17	59483765	59483766	rs8068318	20383145	Chambers JC	2010-04-11	Nat Genet	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	17q23.2	TBX2	rs8068318-G	0.27	3E-10		0.8	[0.6-1.0] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1038	chr17	59484315	59484316	rs7215775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q23.2	RP11-332H18.4, TBX2	rs7215775-A	NR	3E-8		0.0179197	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59484315	59484316	rs7215775	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	17q23.2	TBX2	rs7215775-?	NR	6E-14		0.02974	[0.022-0.037] unit increase novel	Illumina [6108953] (imputed)	N
1038	chr17	59484315	59484316	rs7215775	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	17q23.2	TBX2	rs7215775-?	NR	3E-22		0.03932	[0.031-0.047] unit increase	Illumina [6108953] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.39	9E-7	(Japanese)	0.378	[0.23-0.53] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.3931	8E-8	(Japanese)	0.2913	[0.18-0.4] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.3931	6E-7	(Japanese)	0.07	[0.043-0.097] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.3931	4E-7	(Japanese)	0.2499	[0.15-0.35] unit increase	Illumina [6200000] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.731	4E-6	(EA, initial)	0.389	[0.22-0.55] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.2	TBX2	rs2240736-C		1E-10		0.286	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.2	TBX2	rs2240736-C		2E-6		0.142	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.2	TBX2	rs2240736-C		2E-7		0.14	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1038	chr17	59485392	59485393	rs2240736	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	17q23.2	C17orf82, TBX2	rs2240736-T	0.662306998468428	2E-16		0.34944525	[0.27-0.43] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1038	chr17	59486623	59486624	rs3198587	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs3198587-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1038	chr17	59488829	59488830	rs138987744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs138987744-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1038	chr17	59489892	59489893	rs9907379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q23.2		rs9907379-C	NR	9E-18		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1038	chr17	59489892	59489893	rs9907379	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	17q23.2	NR	rs9907379-T	0.3334	5E-13	(East Asian)	0.0872	[0.063-0.111] unit decrease	Illumina [6200000] (imputed)	N
1038	chr17	59491383	59491384	rs9892365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q23.2		rs9892365-G	NR	1E-9		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1038	chr17	59492267	59492268	rs758599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q23.2		rs758599-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1038	chr17	59492713	59492714	rs758598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q23.2		rs758598-G	NR	8E-122		0.0315	[0.029-0.034] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1038	chr17	59492713	59492714	rs758598	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q23.2	NA	rs758598-A	0.33	6E-11		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
1038	chr17	59493007	59493008	rs1076392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q23.2	C17orf82	rs1076392-T	NR	4E-12		0.0229752	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
1038	chr17	59493007	59493008	rs1076392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q23.2	C17orf82	rs1076392-T	NR	7E-15		0.0258187	[0.019-0.032] unit increase	Affymetrix [127266] (imputed)	N
1038	chr17	59493007	59493008	rs1076392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.2	C17orf82	rs1076392-T	NR	1E-28		0.0364001	[0.03-0.043] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59493007	59493008	rs1076392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	17q23.2	C17orf82	rs1076392-T	NR	1E-8		0.0187574	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	9E-6	(men)	0.0268	[0.015-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	1E-6	(women)	0.0246	[0.015-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	1E-10		0.0258	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	5E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	5E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	2E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	6E-7	(men)	0.026	[0.016-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q23.2	C17orf82	rs882367-T	0.6556	4E-10		0.0227	[0.016-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1038	chr17	59494573	59494574	rs882367	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	17q23.2	TBX2	rs882367-C	0.334	8E-14	(EA)	0.078	[0.058-0.098] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1038	chr17	59494573	59494574	rs882367	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.2	C17orf82	rs882367-T	0.6794	4E-8	(EA,women)	0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1038	chr17	59494573	59494574	rs882367	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.2	C17orf82	rs882367-T	0.6794	4E-8	(EA, men)	0.0279	[0.018-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1038	chr17	59494573	59494574	rs882367	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.2	C17orf82	rs882367-T	0.6794	1E-13	(EA)	0.0267	[0.02-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.2	NR	rs2079795-?	NR	4E-10		0.03557313	[0.024-0.047] unit decrease	Illumina [34656550] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q23.2		rs2079795-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	17q23.2	C17orf82	rs2079795-T	0.33	1E-15		0.088	[0.066-0.11] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q23.2	C17orf82	rs2079795-T	0.328	2E-46		0.045	[0.039-0.051] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q23.2	C17orf82	rs2079795-T	0.32	1E-18		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.2	TBX2	rs2079795-T	0.33	2E-24		0.04	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1038	chr17	59496648	59496649	rs2079795	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	17q23.2	TBX4, TBX2, C17orf82	rs2079795-T	0.33	3E-6		0.4	[NR] cm increase	Affymetrix [334546]	N
1038	chr17	59496893	59496894	rs116960885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs116960885-C	NR	6E-11		0.0821	[0.058-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59496893	59496894	rs116960885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs116960885-C	NR	2E-10		0.0803	[0.056-0.105] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59496926	59496927	rs740753	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	C17orf82	rs740753-T	0.947455	1E-11		0.0280855	[0.02-0.036] unit decrease	NR [13737936] (imputed)	N
1038	chr17	59497276	59497277	rs757608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q23.2	C17orf82	rs757608-A	NR	1E-21		0.0289106	[0.023-0.035] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59497276	59497277	rs757608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs757608-G	NR	4E-27		0.0272	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q23.2	NR	rs757608-G	NR	3E-27		0.0273	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q23.2	NR	rs757608-?	NR	2E-23				Affymetrix [~ 8270000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs757608-?	NR	1E-51				Affymetrix [~ 8270000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.2	NR	rs757608-?	NR	5E-9		0.03685142	[0.025-0.049] unit decrease	Illumina [34656550] (imputed)	N
1038	chr17	59497276	59497277	rs757608	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q23.2	NR	rs757608-A	0.32	4E-28		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
1038	chr17	59497276	59497277	rs757608	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q23.2	NR	rs757608-A	0.32	5E-8				Affymetrix [2446094] (imputed)	N
1038	chr17	59497276	59497277	rs757608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q23.2	NR	rs757608-A	0.3207	1E-26		0.0194	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	17q23.2	NR	rs757608-A	0.3207	1E-26		0.0194	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3207	9E-6	(EA, men)	0.0265	[0.015-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3207	6E-11	(EA)	0.026	[0.018-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3207	1E-6	(EA, women)	0.0253	[0.015-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3157	6E-7	(men)	0.0281	[0.017-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3157	6E-12		0.026	[0.019-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3207	2E-9	(EA)	0.0271	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3193	1E-6	(EA, men)	0.0321	[0.019-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3186	2E-7	(men)	0.0333	[0.021-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3157	1E-10		0.0278	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q23.2	C17orf82	rs757608-A	0.3095	2E-6	(women)	0.0302	[0.018-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3207	5E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3207	3E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3207	2E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3157	6E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3157	3E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q23.2	C17orf82	rs757608-?	0.3157	1E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1038	chr17	59497276	59497277	rs757608	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17q23.2	TBX4	rs757608-A	0.29	2E-17		0.042	[0.028-0.056] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1038	chr17	59497276	59497277	rs757608	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q23.2	BCAS3, TBX4, TBX2, NACA2	rs757608-T	0.35	6E-8		4.4	[2.83-5.97] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1038	chr17	59497486	59497487	rs10853031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q23.2	C17orf82	rs10853031-C	NR	6E-10		0.0179347	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1038	chr17	59497486	59497487	rs10853031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q23.2	C17orf82	rs10853031-C	NR	6E-12		0.0199541	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1038	chr17	59497486	59497487	rs10853031	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q23.2	C17orf82	rs10853031-C	0.3943	3E-12		0.0491	[0.035-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1038	chr17	59498051	59498052	rs7214743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q23.2		rs7214743-G	0.658818	7E-50		0.031762	[0.028-0.036] unit decrease	Illumina [13479295] (imputed)	N
1038	chr17	59498051	59498052	rs7214743	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q23.2	C17orf82, TBX4	rs7214743-?	NR	1E-61		0.05020651	[0.044-0.056] unit decrease	Illumina [27896057] (imputed)	N
1038	chr17	59498051	59498052	rs7214743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs7214743-?	NR	7E-167				NR [~ 8900000] (imputed)	N
1038	chr17	59498051	59498052	rs7214743	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	17q23.2	TBX2	rs7214743-?		5E-43				Illumina [9499600] (imputed)	N
1038	chr17	59498051	59498052	rs7214743	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	17q23.2	TBX2	rs7214743-A	0.33	1E-78	(height)	0.0344	[0.031-0.038] unit increase	Illumina [9499600] (imputed)	N
1038	chr17	59498249	59498250	rs9905385	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.2	intergenic	rs9905385-A	0.3293	2E-63		0.0339	[0.03-0.038] unit increase	Affymetrix [18391927] (imputed)	N
1038	chr17	59502318	59502319	rs878745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q23.2	C17orf82	rs878745-C	NR	3E-8		0.0197122	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
1038	chr17	59502634	59502635	rs730213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q23.2	C17orf82	rs730213-A	NR	4E-9		0.0185741	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
1038	chr17	59506654	59506655	rs723144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q23.2	C17orf82	rs723144-C	NR	2E-8		0.0176068	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1039	chr17	59508426	59508427	rs35686232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.2	C17orf82	rs35686232-G	NR	2E-10		0.0247419	[0.017-0.032] unit increase	Affymetrix [321114] (imputed)	N
1039	chr17	59508426	59508427	rs35686232	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs35686232-?	NR	1E-10		0.0179895	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1039	chr17	59513830	59513831	rs71373880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs71373880-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1039	chr17	59513830	59513831	rs71373880	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q23.2	TBX4	rs71373880-T	0.1618	2E-6		0.0416	[0.024-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1039	chr17	59521600	59521601	rs12449611	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q23.2	C17orf82	rs12449611-?	NR	8E-6	(CE 18:0)	1.708862	[0.96-2.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1039	chr17	59522859	59522860	rs2007632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs2007632-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1039	chr17	59526120	59526121	rs9902847	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q23.2	NR	rs9902847-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1039	chr17	59533352	59533353	rs11867179	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (cerebrospinal fluid)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	17q23.2	TBX4	rs11867179-C	NR	5E-7		5.17	percent increase	Affymetrix [8762422] (imputed)	N
1039	chr17	59533867	59533868	rs3744448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q23.2	TBX4	rs3744448-C	NR	3E-9		0.0239095	[0.016-0.032] unit increase	Affymetrix [321114] (imputed)	N
1039	chr17	59533867	59533868	rs3744448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.2	TBX4	rs3744448-C	NR	1E-8		0.0227547	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
1039	chr17	59534986	59534987	rs3744447	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17q23.2	TBX4	rs3744447-T	0.8426	6E-6		0.0418	[0.024-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1039	chr17	59535964	59535965	rs9912305	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q23.2	NR	rs9912305-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1039	chr17	59547852	59547853	rs3785828	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	17q23.2	TBX4	rs3785828-C	0.26	1E-7	(male)	0.107	[0.068-0.146] unit decrease	Illumina [6380737] (imputed)	N
1039	chr17	59548760	59548761	rs72834687	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	17q23.2	TBX4	rs72834687-A	0.24192	5E-9		0.052	NR unit decrease	Illumina [33400000] (imputed)	N
1039	chr17	59548760	59548761	rs72834687	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	17q23.2	TBX4	rs72834687-A	0.242	3E-9		0.048	[0.032-0.064] unit decrease	Illumina [33400000] (imputed)	N
1039	chr17	59558059	59558059	rs571287458	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs571287458-?	NR	9E-13		0.0220069	[0.015-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1039	chr17	59560348	59560349	rs140385970	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	17q23.2	TBX4	rs140385970-T	0.002	9E-7		0.306	NR unit decrease	Illumina [NR] (imputed)	N
1039	chr17	59575303	59575304	rs113121081	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q23.2	TBX4, NACA2	rs113121081-A	0.194	2E-13	(AA)	0.064	[0.046-0.082] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1039	chr17	59575303	59575304	rs113121081	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q23.2	TBX4, NACA2	rs113121081-A		9E-10				Affymetrix, Illumina [17972582] (imputed)	N
1039	chr17	59575303	59575304	rs113121081	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	17q23.2	TBX4, NACA2	rs113121081-A	0.194	5E-8	(AA)	0.058	[0.036-0.08] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1039	chr17	59575303	59575304	rs113121081	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	17q23.2	TBX4, NACA2	rs113121081-A	0.195	7E-8	(AA)	0.076	[0.049-0.103] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1039	chr17	59585874	59585875	rs145227858	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	17q23.2		rs145227858-G	0.960207	4E-6		0.0254079	[0.011-0.039] unit decrease	Illumina [7666802] (imputed)	N
1039	chr17	59606088	59606089	rs186171056	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q23.2	Intergenic	rs186171056-T	1.0	1E-6	(AA)	0.349	unit increase	Illumina [NR] (imputed)	N
1039	chr17	59608725	59608726	rs2079796	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.2	intergenic	rs2079796-C	0.3702	7E-21		0.0185	[0.015-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1039	chr17	59608725	59608726	rs2079796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs2079796-?	NR	2E-41				NR [~ 8900000] (imputed)	N
1039	chr17	59611016	59611017	rs12943370	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	TBX4	rs12943370-T	0.344893	1E-15		0.0156137	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1039	chr17	59611016	59611017	rs12943370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs12943370-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1039	chr17	59636756	59636757	rs1558275	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs1558275-?	NR	6E-9		0.0128225	[0.0086-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
1040	chr17	59638622	59638623	rs2378870	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.2	NR	rs2378870-?	NR	3E-6		0.03019646	[0.018-0.043] unit decrease	Illumina [34656550] (imputed)	N
1040	chr17	59638622	59638623	rs2378870	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q23.2	NACA2	rs2378870-T	0.372	4E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1040	chr17	59652281	59652282	rs7222178	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	17q23.2	NR	rs7222178-A	0.2	4E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1040	chr17	59652281	59652282	rs7222178	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	17q23.2	Intergenic	rs7222178-A	NR	2E-9	(additive)	1.09	[1.06-1.12]	Affymetrix, Illumina [11554240] (imputed)	N
1040	chr17	59654592	59654593	rs7212908	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	17q23.2		rs7212908-A	0.8025	2E-11		0.910738	[0.886261257-0.935890777]	Affymetrix, Illumina [NR] (imputed)	N
1040	chr17	59667952	59667953	rs17610181	23989986	Evangelou E	2013-08-29	Ann Rheum Dis	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	17q23.2	NACA2	rs17610181-A	0.14	8E-6		1.12	[1.06-1.18]	Illumina [2567279] (imputed)	N
1040	chr17	59687841	59687842	rs2378873	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	17q23.2	NACA2, BRIP1	rs2378873-T	0.44	2E-8		0.53	[0.33-0.73] unit decrease	Illumina [8257341] (imputed)	N
1040	chr17	59694637	59694638	rs2040609	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	17q23.2	intergenic	rs2040609-T	NR	3E-6		4.678	NR z-score increase	Affymetrix, Illumina [up to 9001799] (imputed)	N
1040	chr17	59727849	59727850	rs11867566	28081215	Pardo LM	2017-01-12	PLoS One	Genome-Wide Association Studies of Multiple Keratinocyte Cancers.	Multiple keratinocyte cancers	2,106 European ancestry multiple keratinocyte cancer cases, 2,061 European ancestry single keratinocyte cancer cases, 135 European and unknown ancestry multiple keratinocyte cancer cases, 761 European and unknown ancestry single keratinocyte cancer cases	NA	17q23.2	intergenic	rs11867566-A	NR	3E-6		4.643	NR z-score increase	Affymetrix, Illumina [up to 9001799] (imputed)	N
1040	chr17	59730017	59730018	rs2890013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q23.2		rs2890013-T	0.252764	1E-11		0.017479895	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1040	chr17	59730384	59730385	rs7213525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q23.2	NACA2	rs7213525-?	NR	6E-6	(creatinine)	0.14873344	[0.084-0.213] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1041	chr17	59794626	59794627	rs8074279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q23.2	BRIP1	rs8074279-C	0.684487	1E-13		0.0160829	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1041	chr17	59794626	59794627	rs8074279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q23.2	BRIP1	rs8074279-C	0.684467	2E-12		0.016741144	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1041	chr17	59880645	59880646	rs34289250	21964575	Rafnar T	2011-10-02	Nat Genet	Mutations in BRIP1 confer high risk of ovarian cancer.	Ovarian cancer	640 European ancestry cases, 41,607 European ancestry controls	NA	17q23.2	BRIP1	rs34289250-C	0.0089	6E-13		7.95	[NR]	Illumina [15957390] (imputed)	N
1041	chr17	59897454	59897455	rs12453935	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	17q23.2	NR	rs12453935-?		9E-6	(AA)			Illumina [up to 524000]	N
1041	chr17	59899789	59899790	rs6504074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q23.2		rs6504074-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1042	chr17	59917365	59917366	rs61169879	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q23.2	BRIP1	rs61169879-T	0.1641	9E-10		0.082	[0.056-0.108] unit increase	NR [7784415] (imputed)	N
1042	chr17	59924611	59924612	rs4988344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q23.2		rs4988344-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1042	chr17	59940632	59940633	rs4988340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q23.2	NR	rs4988340-T	0.284305	2E-14		0.016383	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1042	chr17	59967939	59967940	rs2014444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q23.2	NR	rs2014444-T	0.29004	2E-16		0.016596	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1042	chr17	59967939	59967940	rs2014444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q23.2	Intergenic	rs2014444-T	0.2867	7E-9	(MTAG)	0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1042	chr17	59979511	59979512	rs75545207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q23.2		rs75545207-A	0.1486	4E-10	(conditional-joint)	0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1042	chr17	59987191	59987192	rs766107802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q23.2	INTS2	rs766107802-A	0.071241	4E-12		0.037293438	[0.027-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1042	chr17	60001977	60001978	rs56794817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q23.2		rs56794817-A	0.1615	2E-10		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1042	chr17	60001977	60001978	rs56794817	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q23.2	Intergenic	rs56794817-A	0.1615	3E-12	(MTAG)	0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1043	chr17	60085157	60085158	rs144268822	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	17q23.2	MED13	rs144268822-G	0.2259	6E-7	(African)			Illumina [4404269] (imputed)	N
1043	chr17	60091880	60091881	rs145185045	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q23.2		rs145185045-T	0.77	1E-15		0.11	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
1043	chr17	60093541	60093542	rs72843781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs72843781-C	0.363926	2E-16				Affymetrix, Illumina [24246363] (imputed)	N
1043	chr17	60093541	60093542	rs72843781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.2	NR	rs72843781-C	0.370831	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
1043	chr17	60143666	60143667	rs72843799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q23.2		rs72843799-C	NR	7E-13		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1043	chr17	60143666	60143667	rs72843799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q23.2		rs72843799-C	NR	2E-13		0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1043	chr17	60150382	60150383	rs57918684	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	17q23.2	MED13	rs57918684-A	0.1551	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix [~ 7740000] (imputed)	N
1043	chr17	60153527	60153528	rs8073551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs8073551-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1044	chr17	60171222	60171223	rs9912042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q23.2		rs9912042-A	NR	3E-12		0.0138	[0.0099-0.0177] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1044	chr17	60184913	60184914	rs6416935	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	17q23.2	NR	rs6416935-G	NR	4E-7		1.081081	[1.05-1.11]	Illumina [11933700] (imputed)	N
1044	chr17	60189341	60189342	rs148770887	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	17q23.2	NR	rs148770887-A	0.01765	3E-6		0.5393	[0.31-0.76] unit decrease	Illumina [10677593] (imputed)	N
1044	chr17	60198199	60198200	rs148534175	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	17q23.2	POLRMTP1	rs148534175-T		1E-8		0.1113	[0.073-0.149] unit increase	Illumina [NR]	N
1044	chr17	60198759	60198760	rs74894391	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q23.2	Intergenic	rs74894391-A	0.8587	6E-14	(MTAG)	0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1044	chr17	60198759	60198760	rs74894391	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q23.2	Intergenic	rs74894391-A	0.8587	4E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1044	chr17	60219801	60219802	rs142151479	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q23.2	Intergenic	rs142151479-T	0.1063	1E-9	(MTAG)	0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1044	chr17	60219801	60219802	rs142151479	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q23.2	Intergenic	rs142151479-C	0.8937	3E-8		0.0176	[0.011-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1044	chr17	60285204	60285205	rs8081489	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	17q23.2	NR	rs8081489-C	0.01604	9E-8		3.171	[2.73-3.62]	Illumina [281811]	N
1045	chr17	60363953	60363954	rs571674178	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	17q23.2		rs571674178-A	0.01272	7E-7		4.382	[2.44599999999999-7.849]	Affymetrix [7975321] (imputed)	N
1045	chr17	60387920	60387921	rs142643109	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment	323 European ancestry bipolar disorder responder cases, 6,684 European ancestry controls	NA	17q23.2	TBC1D3P2, MIR4315-2, MIR4315-1, METTL2A, MED13, EFCAB3	rs142643109-G	0.02	4E-7		3.57	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1046	chr17	60533474	60533475	rs2319019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q23.2		rs2319019-C	0.498292	4E-11		0.0135283	[0.0095-0.0175] unit decrease	Illumina [13479295] (imputed)	N
1047	chr17	60557934	60557935	rs139355991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs139355991-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1047	chr17	60565209	60565210	rs118172483	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	TLK2	rs118172483-C	0.955962	9E-14		0.0339168	[0.025-0.043] unit decrease	NR [13737936] (imputed)	N
1047	chr17	60567950	60567951	rs35127411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q23.2	Intergenic	rs35127411-A	0.354	1E-16	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1047	chr17	60567950	60567951	rs35127411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q23.2	Intergenic	rs35127411-A	0.3537	2E-10	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1047	chr17	60573769	60573770	rs7217523	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	TLK2	rs7217523-C	0.955851	5E-10		0.027825	[0.019-0.037] unit decrease	NR [13737936] (imputed)	N
1047	chr17	60592750	60592751	rs11079480	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.2		rs11079480-?	NR	2E-9		0.012503	[0.0084-0.0167] unit decrease	Affymetrix [20259828] (imputed)	N
1047	chr17	60593815	60593816	rs12949468	25918517	Yashin AI	2015-04-13	Front Genet	Genetics of aging, health, and survival: dynamic regulation of human longevity related traits.	Lifespan	679 female individuals	432 male individuals	17q23.2	TLK2	rs12949468-?	0.157	5E-20	(females)	9.226	[NR] unit decrease	Affymetrix [429783]	N
1047	chr17	60597296	60597297	rs737037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q23.2	Intergenic	rs737037-A	0.6533	2E-14		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1047	chr17	60597985	60597986	rs2430926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q23.2	Intergenic	rs2430926-T	0.3521	3E-9	(MTAG)	0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1047	chr17	60636825	60636826	rs11657101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.2	TLK2	rs11657101-A	NR	1E-9		0.0179722	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1047	chr17	60636825	60636826	rs11657101	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.2	TLK2	rs11657101-A	0.3612	3E-16		0.0161	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1047	chr17	60636825	60636826	rs11657101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs11657101-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q23.2	TLK2	rs146385050-A	NR	2E-8		0.020596	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q23.2	TLK2	rs146385050-A	NR	2E-8		0.020826	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.2	TLK2	rs146385050-A	NR	1E-8		0.0210632	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q23.2	NR	rs146385050-A	0.1766	7E-7		0.013	[0.0079-0.0181] unit increase	NR [~ 27400000] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q23.2	MRC2	rs146385050-A	0.195	2E-19	(Collagen alpha-1(I) chain, COL1A1.11140.56.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
1047	chr17	60637257	60637258	rs146385050	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q23.2	MRC2	rs146385050-A	0.195	1E-11	(C-type mannose receptor 2, MRC2.3041.55.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1047	chr17	60662221	60662222	rs4968766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q23.2		rs4968766-T	NR	1E-8		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1048	chr17	60699047	60699048	rs117181572	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	17q23.2		rs117181572-?	NR	3E-6		0.15	[0.087-0.213] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1048	chr17	60710037	60710038	rs2429403	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q23.2	NR	rs2429403-?	NR	2E-7		5.196	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1048	chr17	60720057	60720058	rs12452590	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.2	MRC2	rs12452590-T	0.64274	6E-19		0.0177336	[0.014-0.022] unit decrease	NR [13737936] (imputed)	N
1048	chr17	60720057	60720058	rs12452590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q23.2		rs12452590-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1048	chr17	60720057	60720058	rs12452590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q23.2		rs12452590-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1048	chr17	60720057	60720058	rs12452590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.2		rs12452590-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1048	chr17	60720361	60720362	rs8078112	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	MRC2	rs8078112-C	0.5367	3E-8		0.1913	[0.12-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1048	chr17	60734663	60734664	rs2465410	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q23.2	Intergenic	rs2465410-G	0.365	3E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr17	60763399	60763400	rs12386061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.2		rs12386061-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1048	chr17	60765042	60765043	rs3786130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q23.2		rs3786130-C	NR	3E-22		0.0183	[0.015-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1048	chr17	60765042	60765043	rs3786130	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	MRC2	rs3786130-C	0.5616	7E-10		0.1571	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1048	chr17	60767134	60767135	rs56288724	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.2	MRC2	rs56288724-G	0.6049	3E-25		0.2657	[0.22-0.32] mmHg decrease	Affymetrix [NR] (imputed)	N
1048	chr17	60767150	60767151	rs740698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q23.2		rs740698-T	NR	9E-14		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1048	chr17	60767150	60767151	rs740698	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q23.2	MRC2	rs740698-T	0.56	3E-12		0.228	[0.17-0.29] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1048	chr17	60778931	60778932	rs2251393	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17q23.2	intergenic	rs2251393-?	0.15	4E-7	(Additive)	1.13	[1.08-1.18]	Affymetrix [319222]	N
1048	chr17	60795073	60795074	rs4968736	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	17q23.2	NR	rs4968736-G	0.358654353900192	3E-8		0.0053362907	[0.0035-0.0072] unit increase	NR [NR]	N
1048	chr17	60795073	60795074	rs4968736	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q23.2	NR	rs4968736-G	0.358654353900192	4E-8		0.008379169	[0.0054-0.0114] unit increase	NR [NR]	N
1048	chr17	60795073	60795074	rs4968736	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	17q23.2	NR	rs4968736-G	0.358654353900192	4E-8		0.0053426237	[0.0034-0.0073] unit increase	NR [NR]	N
1049	chr17	60945839	60945840	rs887400	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	17q23.2	MIR548W	rs887400-A	0.962	4E-6		1.65	[1.33-2.06]	Affymetrix, Illumina [12148595] (imputed)	N
1050	chr17	61001332	61001333	rs56174355	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q23.2	MRC2	rs56174355-T	0.078555103	1E-7		0.2543	[0.16-0.35] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1050	chr17	61005118	61005119	rs80120202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.2		rs80120202-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1050	chr17	61022294	61022295	rs365521	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	17q23.2	NR	rs365521-G	0.53	1E-6		1.5873016	[1.39-1.78]	NR [up to 6398204] (imputed)	N
1050	chr17	61024695	61024696	rs8076183	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q23.2	NR	rs8076183-C	0.5515	3E-10		1.0384216	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1050	chr17	61043404	61043405	rs78022196	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	17q23.2	NR	rs78022196-?	NR	8E-6		0.59	[0.55-0.64]	Illumina [539000] (imputed)	N
1050	chr17	61049323	61049324	rs72843143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q23.2		rs72843143-T	0.21	2E-15		7.97	z score increase	Affymetrix [9061022] (imputed)	N
1050	chr17	61049323	61049324	rs72843143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q23.2		rs72843143-T	0.21	5E-14		7.53	z score increase	Affymetrix [9061022] (imputed)	N
1050	chr17	61049323	61049324	rs72843143	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q23.2	NR	rs72843143-T	0.2298	1E-13				NR [9056863] (imputed)	N
1050	chr17	61052948	61052949	rs72843145	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q23.2	NR	rs72843145-T	0.171968	3E-8		0.046309836	[0.03-0.063] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1050	chr17	61052948	61052949	rs72843145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q23.2	Intergenic	rs72843145-T	0.8131	2E-8		0.0205	[0.013-0.028] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1050	chr17	61076427	61076428	rs1588366	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	17q23.2	TANC2	rs1588366-G		1E-8	(EA)	0.24	[0.14-0.34] unit decrease	Illumina [NR] (imputed)	N
1050	chr17	61076427	61076428	rs1588366	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	17q23.2	TANC2	rs1588366-?	NR	9E-9	(EA)	1.5384616	[1.35-1.79]	Illumina [6090031] (imputed)	N
1051	chr17	61098295	61098296	rs72843166	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q23.2	TANC2	rs72843166-T	NR	2E-8		0.02258831	[0.015-0.03] unit increase	Affymetrix [NR]	N
1051	chr17	61141952	61141953	rs8071332	32373937	Dardani C	2020-05-06	Int J Epidemiol	Cleft lip/palate and educational attainment: cause, consequence or correlation? A Mendelian-randomization study.	Cleft lip with or without cleft palate	1,692 European ancestry cases, 4,259 European ancestry controls	NA	17q23.2	NR	rs8071332-?	NR	6E-10		0.3606	[0.25-0.47] unit increase	NR [7618724] (imputed)	N
1051	chr17	61181111	61181112	rs17682747	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q23.3		rs17682747-A	0.2312	5E-8		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1051	chr17	61181111	61181112	rs17682747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17q23.3		rs17682747-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1051	chr17	61181891	61181892	rs78119823	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	TANC2	rs78119823-A	0.0459	5E-11		0.0298	[0.021-0.039] unit decrease	Affymetrix [18391927] (imputed)	N
1051	chr17	61188395	61188396	rs34536594	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	17q23.3	TANC2	rs34536594-A	0.18	6E-11		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1051	chr17	61201357	61201358	rs9904970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs9904970-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1052	chr17	61298019	61298020	rs4968759	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Streptococcaceae id.1850)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	17q23.3		rs4968759-A	NR	9E-7		4.914107	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1053	chr17	61391113	61391114	rs72841368	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q23.3	TANC2	rs72841368-T	0.1896	2E-11		1.0305576		Affymetrix [11880941] (imputed)	N
1053	chr17	61436443	61436444	rs117037340	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	17q23.3	NA	rs117037340-A	0.9701	2E-8	(Female)	1.13	[1.09-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1053	chr17	61438428	61438429	rs117358906	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	17q23.3		rs117358906-?	NR	1E-8		2.0003	[1.32-2.68] unit increase	Affymetrix [NR] (imputed)	N
1054	chr17	61476516	61476517	rs8073525	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17q23.3	NR	rs8073525-?	NR	8E-6	(AA)	14.1	[12.38-15.82]	Illumina [905956]	N
1054	chr17	61499731	61499732	rs116112765	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACE	5,362 Icelandic ancestry individuals	NA	17q23.3		rs116112765-T	0.01865	1E-57		1.08703	[0.95-1.22] unit decrease	Illumina [7506463] (imputed)	N
1054	chr17	61524224	61524225	rs75195552	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q23.3	NR	rs75195552-A	NR	7E-9		0.01678	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1054	chr17	61529579	61529580	rs4968776	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	17q23.3	PRCKA	rs4968776-?		2E-6	(corrected for APOE4 status)	0.14	[NR] unit increase	Illumina [5137218] (imputed)	N
1054	chr17	61538147	61538148	rs138190086	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	17q23.3	ACE	rs138190086-A	0.02	5E-9		1.3	[1.19-1.42]	Affymetrix, Illumina [11480632] (imputed)	N
1054	chr17	61540350	61540351	rs149418624	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q23.3	ACE	rs149418624-A	0.2335	8E-10		0.014096475	[0.0096-0.0186] unit decrease	Illumina [9339358] (imputed)	N
1054	chr17	61545778	61545779	rs6504163	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	17q23.3		rs6504163-?	NR	1E-9				Illumina [NR] (imputed)	N
1054	chr17	61545778	61545779	rs6504163	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	17q23.3	NR	rs6504163-?	NR	7E-7				Affymetrix [7795605] (imputed)	N
1054	chr17	61545778	61545779	rs6504163	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	17q23.3	NR	rs6504163-?	NR	5E-9		1.05	[1.03- 1.07]	Affymetrix [7795605] (imputed)	N
1054	chr17	61547561	61547562	rs8077276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q23.3		rs8077276-A	NR	1E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1054	chr17	61547561	61547562	rs8077276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q23.3		rs8077276-A	NR	8E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1054	chr17	61547561	61547562	rs8077276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q23.3		rs8077276-A	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1054	chr17	61547561	61547562	rs8077276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.3		rs8077276-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q23.3		rs4968782-A	NR	2E-10		0.0378	[0.026-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17q23.3	ACE	rs4968782-?	NR	6E-14				Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17q23.3	ACE	rs4968782-?	NR	3E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17q23.3	ACE	rs4968782-?	NR	8E-15				Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17q23.3	ACE	rs4968782-?		2E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17q23.3	ACE	rs4968782-?	NR	7E-16				Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	17q23.3	ACE	rs4968782-?	NR	4E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17q23.3	ACE	rs4968782-?	NR	3E-16				Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	17q23.3	ACE	rs4968782-?	NR	3E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1054	chr17	61548475	61548476	rs4968782	25340798	Kauwe JS	2014-10-23	PLoS Genet	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	Cerebrospinal fluid levels of Alzheimer's disease-related proteins	574 individuals	NA	17q23.3	CYB561, ACE	rs4968782-G	NR	4E-12	(Angiotensin-converting enzyme)			Illumina [5815690] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	17q23.3		rs4277405-T	NR	2E-8		0.0385	[0.025-0.052] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	17q23.3		rs4277405-T	NR	8E-16		0.0406	[0.031-0.05] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	17q23.3	ACE	rs4277405-C	0.375555	7E-20		0.05686939	[0.045-0.069] unit increase	Affymetrix [7288503] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q23.3		rs4277405-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	17q23.3	ACE	rs4277405-T	0.62	2E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1054	chr17	61548917	61548918	rs4277405	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	17q23.3	ACE	rs4277405-T	0.62	1E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1054	chr17	61548947	61548948	rs4459609	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q23.3	CYB561, ACE	rs4459609-A	0.613	2E-7	(EA, initial)	0.237	[0.15-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1054	chr17	61548947	61548948	rs4459609	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q23.3	CYB561, ACE	rs4459609-A	0.613	2E-14		0.198	[0.15-0.25] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1054	chr17	61554193	61554194	rs4291	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.3	ACE	rs4291-T	0.629	1E-9		0.2063	[0.14-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1054	chr17	61554663	61554664	rs372565955	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	17q23.3	ACE	rs372565955-T	0.425	7E-11		0.05208		Illumina [243345]	N
1054	chr17	61556297	61556298	rs4295	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.3	ACE	rs4295-C		1E-8		0.24	unit increase	Affymetrix [at least 2696785] (imputed)	N
1054	chr17	61556297	61556298	rs4295	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.3	ACE	rs4295-C		4E-8		0.14	unit increase	Affymetrix [at least 2696785] (imputed)	N
1054	chr17	61557772	61557773	rs3730025	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	17q23.3	ACE	rs3730025-?	NR	3E-7		0.199405	unit increase	NR [10687077] (imputed)	N
1054	chr17	61558228	61558229	rs4305	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	17q23.3	ACE	rs4305-A	0.444171	3E-13		0.05974891	[0.044-0.076] unit increase	Affymetrix [7288503] (imputed)	N
1054	chr17	61559624	61559625	rs4308	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or systolic blood pressure (pleiotropy)	1,006,863 individuals with systolic blood pressure measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	17q23.3		rs4308-G	0.63	8E-15				NR [NR]	N
1054	chr17	61559624	61559625	rs4308	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or diastolic blood pressure (pleiotropy)	1,006,863 individuals with diastolic blood pressure measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	17q23.3		rs4308-G	0.63	7E-15				NR [NR]	N
1054	chr17	61559624	61559625	rs4308	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	17q23.3	ACE	rs4308-A	0.37	7E-14		0.213	[0.15-0.27] unit increase	Affymetrix [~ 9800000] (imputed)	N
1054	chr17	61560762	61560763	rs4311	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	17q23.3	ACE	rs4311-?	NR	1E-8		0.0542811	unit decrease	NR [10687077] (imputed)	N
1054	chr17	61560762	61560763	rs4311	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	17q23.3	NR	rs4311-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1054	chr17	61563199	61563200	rs4325	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q23.3	NR	rs4325-C	0.5388	7E-14		0.0346	[0.026-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1054	chr17	61563199	61563200	rs4325	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	17q23.3	ACE	rs4325-?	NR	3E-12	(X-14304)	0.05359	[NR] unit decrease	Affymetrix [655658]	N
1054	chr17	61563199	61563200	rs4325	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	17q23.3	ACE	rs4325-?	NR	1E-11	(aspartylphenylalanine)	0.06079	[NR] unit decrease	Affymetrix [655658]	N
1054	chr17	61563457	61563458	rs4329	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	17q23.3	ACE	rs4329-G	0.465	8E-20	(aspartylphenylalanine)	0.134	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1054	chr17	61565024	61565025	rs4335	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q23.3	NR	rs4335-G	0.4783	1E-15		0.0304	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1054	chr17	61566030	61566031	rs4343	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q23.3	ACE	rs4343-G	0.427152	2E-41	(leucylalanine)	0.304	[0.26-0.35] unit increase	Illumina [13039987] (imputed)	N
1054	chr17	61566030	61566031	rs4343	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	17q23.3	ACE	rs4343-A	0.47	1E-37	(aspartylphenylalanine/X-14450--phenylalanylleucine)	0.059	[0.049-0.069] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61566030	61566031	rs4343	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	17q23.3	ACE	rs4343-G	0.42	8E-14	(Threonylphenylalanine)	0.21	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1054	chr17	61566030	61566031	rs4343	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	17q23.3	ACE	rs4343-G	0.25	9E-25	(Aspartylphenylalanine)	0.22	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1054	chr17	61566030	61566031	rs4343	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	17q23.3	ACE	rs4343-A	0.75	1E-18	([H]HWESASLLR[OH])	0.35	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1054	chr17	61566030	61566031	rs4343	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	17q23.3	ACE	rs4343-?	NR	1E-16	(X-14189)	0.05975	[NR] unit decrease	Affymetrix [655658]	N
1054	chr17	61566030	61566031	rs4343	20066004	Chung CM	2010-01-12	Pharmacogenomics J	A genome-wide association study identifies new loci for ACE activity: potential implications for response to ACE inhibitor.	Angiotensin-converting enzyme activity	400 Han Chinese ancestry hypertensive cases	623 Han Chinese ancestry hypertensive cases	17q23.3	ACE	rs4343-G	0.31	3E-25		16.2	[NR] % variance	Illumina [~ 550000]	N
1054	chr17	61566723	61566724	rs4344	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q23.3	ACE	rs4344-A	0.49875	9E-136	(ACE, 10714_7_3)	0.58328056	[0.54-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
1054	chr17	61569731	61569732	rs4351	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q23.3	ACE	rs4351-A	0.48	4E-22	(X-14189--leucylalanine)	0.058	[0.046-0.07] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61569731	61569732	rs4351	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q23.3	ACE	rs4351-A	0.48	1E-19	(aspartylphenylalanine)	0.046	[0.036-0.056] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61569731	61569732	rs4351	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q23.3	ACE	rs4351-A	0.47	1E-14	(X-14205--alpha-glutamyltyrosine)	0.044	[0.032-0.056] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61569731	61569732	rs4351	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q23.3	ACE	rs4351-A	0.46	3E-17	(X-14304--leucylalanine)	0.053	[0.041-0.065] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61569731	61569732	rs4351	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	17q23.3	ACE	rs4351-A	NR	9E-13	(Unknown)			Affymetrix [333722]	N
1054	chr17	61569731	61569732	rs4351	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	17q23.3	ACE	rs4351-?	NR	5E-15	(X-14208)	0.05775	[NR] unit decrease	Affymetrix [655658]	N
1054	chr17	61569731	61569732	rs4351	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	17q23.3	ACE	rs4351-?	NR	4E-14	(X-14205)	0.04795	[NR] unit decrease	Affymetrix [655658]	N
1054	chr17	61570421	61570422	rs4353	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	ACE plasma levels	400 French ancestry individuals	NA	17q23.3		rs4353-A	NR	6E-26		0.226	[0.19-0.26] ng/mL decrease	Illumina [5201092] (imputed)	N
1054	chr17	61573760	61573761	rs4362	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q23.3	ACE	rs4362-T	0.53	1E-21	(X-14208--phenylalanylserine)	0.061	[0.049-0.073] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1054	chr17	61574491	61574492	rs4363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACE	5,362 Icelandic ancestry individuals	NA	17q23.3		rs4363-G	0.4996	2E-257		0.588022	[0.55-0.62] unit increase	Illumina [7506463] (imputed)	N
1054	chr17	61575853	61575854	rs149155892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs149155892-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1055	chr17	61645999	61646000	rs17631394	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q23.3	NR	rs17631394-G	NR	4E-6		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1055	chr17	61645999	61646000	rs17631394	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q23.3	Intergenic	rs17631394-A	0.269883225047619	3E-11		0.022612931	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1055	chr17	61654224	61654225	rs79480822	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q23.3	Intergenic	rs79480822-T	NR	7E-7	(between families)	4.952	unit increase	Affymetrix [up to 15107142] (imputed)	N
1055	chr17	61666686	61666687	rs72845886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q23.3		rs72845886-T	NR	4E-10		0.0313	[0.022-0.041] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1055	chr17	61667007	61667008	rs72845888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q23.3	NR	rs72845888-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1055	chr17	61667007	61667008	rs72845888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q23.3		rs72845888-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1055	chr17	61687599	61687600	rs17631783	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	17q23.3	TACO1	rs17631783-T	0.263459811367037	4E-8		0.0487	[0.031-0.066] unit decrease	NR [5035015] (imputed)	N
1055	chr17	61696758	61696759	rs72845891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.3	MAP3K3	rs72845891-A	NR	3E-14		0.0227392	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1055	chr17	61702988	61702989	rs16947005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q23.3	NR	rs16947005-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1055	chr17	61705682	61705683	rs139418552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs139418552-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1055	chr17	61709127	61709128	rs67817520	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q23.3	MAP3K3	rs67817520-T	0.138	4E-7		0.0516	[0.032-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1055	chr17	61712963	61712964	rs7209435	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.3	NR	rs7209435-?	NR	7E-11		0.0437417	[0.031-0.057] unit increase	Illumina [34656550] (imputed)	N
1055	chr17	61712963	61712964	rs7209435	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	17q23.3	MAP3K3, WDR68, LYK5, MT1F	rs7209435-C	0.27	7E-7		4.8	[2.84-6.76] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1055	chr17	61722141	61722142	rs12940055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.3	MAP3K3	rs12940055-T	NR	6E-9		0.0280655	[0.019-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1055	chr17	61728880	61728881	rs8075273	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q23.3	NA	rs8075273-A	0.2867	3E-13		0.0138	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1055	chr17	61728880	61728881	rs8075273	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q23.3	NA	rs8075273-A	0.2878	5E-14		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1055	chr17	61728880	61728881	rs8075273	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q23.3	NA	rs8075273-A	0.2878	5E-14		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1056	chr17	61739100	61739101	rs78369934	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q23.3	MAP3K3	rs78369934-T	0.945453	6E-11		0.0199362	[0.014-0.026] unit increase	Affymetrix [12370749]	N
1056	chr17	61755973	61755974	rs12325866	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q23.3	NR	rs12325866-A	0.2866	3E-13		0.0138	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1056	chr17	61763030	61763031	rs11658329	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.3	NR	rs11658329-?	NR	7E-11		0.0436528	[0.031-0.057] unit increase	Illumina [34656550] (imputed)	N
1056	chr17	61763030	61763031	rs11658329	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	17q23.3	MAP3K3	rs11658329-G	0.30	5E-10		0.049	[0.029-0.069] unit decrease	Affymetrix [855034]	N
1056	chr17	61763030	61763031	rs11658329	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	17q23.3	MAP3K3	rs11658329-C	0.70	6E-10		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1056	chr17	61763184	61763185	rs3785574	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17q23.3	MAP3K3	rs3785574-T	0.46	9E-14		0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1056	chr17	61764710	61764710	rs377122391	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	MAP3K3	rs377122391-CA	0.2039	8E-24		0.0256	[0.021-0.03] unit increase	Affymetrix [18391927] (imputed)	N
1056	chr17	61774204	61774204	rs3833116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q23.3	LIMD2	rs3833116-CT	0.263907	2E-11		0.016998492	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr17	61778688	61778689	rs11542436	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q23.3	RP11-51F16.1	rs11542436-A	0.7127	8E-10		0.0431	[0.029-0.057] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1056	chr17	61788858	61788859	rs4480868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q23.3		rs4480868-T	NR	5E-10		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1056	chr17	61794197	61794198	rs34111070	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q23.3	Intergenic	rs34111070-T	NR	1E-6	(between families)	4.892	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1056	chr17	61801806	61801806	rs551382282	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q23.3	NR	rs551382282-CT	0.326756	4E-11		0.0675511	[0.047-0.088] unit decrease	Affymetrix [21375087] (imputed)	N
1056	chr17	61812994	61812995	rs6504179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q23.3	NR	rs6504179-G	0.640331	8E-11		0.012521	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1056	chr17	61812994	61812995	rs6504179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.3	NR	rs6504179-G	0.637361	2E-16				Affymetrix, Illumina [24332387] (imputed)	N
1056	chr17	61812994	61812995	rs6504179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q23.3	NR	rs6504179-G	0.640457	5E-19		0.017249	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1056	chr17	61812994	61812995	rs6504179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q23.3		rs6504179-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1056	chr17	61814197	61814198	rs5020097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q23.3	RP11-51F16.8, STRADA	rs5020097-C	0.578275	2E-12		0.01583917	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr17	61814197	61814198	rs5020097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q23.3	NR	rs5020097-C	0.578704	2E-21		0.018946	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1056	chr17	61820391	61820394	rs368302294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q23.3		rs368302294-A	NR	4E-12		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1056	chr17	61820391	61820394	rs368302294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q23.3		rs368302294-A	NR	6E-15		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1056	chr17	61834980	61834981	rs7212196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q23.3	Intergenic	rs7212196-T	0.3963	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1056	chr17	61843690	61843691	rs62077506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q23.3	NR	rs62077506-C	NR	3E-21		0.0481	[0.038-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1057	chr17	61872295	61872296	rs11352891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q23.3		rs11352891-T	NR	2E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1057	chr17	61880270	61880270	rs60325980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q23.3	DDX42	rs60325980-CA	0.582124	5E-16		0.018702924	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1057	chr17	61892035	61892035	rs369481286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q23.3		rs369481286-CT	NR	2E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1057	chr17	61893397	61893398	rs7223966	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q23.3	DDX42	rs7223966-G	0.725	1E-6	(EA)	0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1057	chr17	61893397	61893398	rs7223966	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q23.3	DDX42	rs7223966-G	0.722	1E-7		0.017	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1057	chr17	61893397	61893398	rs7223966	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.3	DDX42	rs7223966-A	0.2762	8E-10	(EA,men)	0.0348	[0.024-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1057	chr17	61893397	61893398	rs7223966	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.3	DDX42	rs7223966-A	0.2762	2E-13	(EA)	0.0288	[0.021-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1057	chr17	61893397	61893398	rs7223966	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q23.3	DDX42	rs7223966-A	0.2762	1E-6	(EA, women)	0.0244	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1057	chr17	61894075	61894076	rs17638873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q23.3	NR	rs17638873-C	NR	6E-10		0.0214	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1057	chr17	61896724	61896724	rs58909797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q23.3		rs58909797-ATTAAGCTGGGAC	NR	2E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1057	chr17	61900887	61900888	rs56378979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs56378979-?	NR	2E-30				NR [~ 8900000] (imputed)	N
1057	chr17	61903444	61903445	rs2584625	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q23.3	FTSJ3	rs2584625-G		5E-12		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1057	chr17	61904743	61904744	rs141975038	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q23.3	NR	rs141975038-G	0.01045	2E-8	(TTN)	1.085	NR unit increase	Illumina [1671387] (imputed)	N
1057	chr17	61904743	61904744	rs141975038	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q23.3	NR	rs141975038-G	0.01045	2E-8	(APOC1)	0.03345	NR unit increase	Illumina [1671387] (imputed)	N
1057	chr17	61908555	61908556	rs13030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q23.3	NR	rs13030-T	NR	2E-11		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1057	chr17	61908555	61908556	rs13030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q23.3	NR	rs13030-T	NR	7E-38		0.0326	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1057	chr17	61918081	61918082	rs2727280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q23.3		rs2727280-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1057	chr17	61922101	61922102	rs2727324	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q23.3	SMARCD2, CSH2	rs2727324-C	0.33	5E-9		5.86	z-score increase	Affymetrix [4312306] (imputed)	N
1057	chr17	61929627	61929628	rs71377714	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q23.3	Intergenic	rs71377714-T	NR	3E-7	(between families)	5.128	unit increase	Affymetrix [up to 15107142] (imputed)	N
1057	chr17	61931548	61931549	rs9904067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q23.3		rs9904067-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1057	chr17	61939013	61939014	rs2854223	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q23.3	NR	rs2854223-G	0.280954	1E-9		0.0656615	[0.044-0.087] unit increase	Affymetrix [21375087] (imputed)	N
1057	chr17	61940800	61940801	rs4058053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.3	NR	rs4058053-T	0.610789	6E-19				Affymetrix, Illumina [24653286] (imputed)	N
1057	chr17	61940800	61940801	rs4058053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.3	NR	rs4058053-T	0.610809	2E-23				Affymetrix, Illumina [24558453] (imputed)	N
1057	chr17	61940800	61940801	rs4058053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q23.3	NR	rs4058053-T	0.606947	2E-25		0.021069	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1057	chr17	61940803	61940804	rs2320118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q23.3	TCAM1P	rs2320118-A	0.608473	1E-18		0.02023383	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1057	chr17	61941283	61941284	rs2584597	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	17q23.3	NR	rs2584597-?		3E-10		0.0150996	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1057	chr17	61943095	61943096	rs2854217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	TCAM1P	rs2854217-C	NR	4E-8		0.0176886	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1057	chr17	61947106	61947107	rs2854207	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q23.3	CSH2	rs2854207-C	0.727	1E-42		0.046	[0.04-0.052] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1057	chr17	61953340	61953341	rs8073500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	17q23.3		rs8073500-C	0.017763	4E-8		0.0585387	[0.038-0.079] unit decrease	Illumina [13479924] (imputed)	N
1057	chr17	61954470	61954471	rs2008018	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q23.3	CSH2, GH2	rs2008018-?	NR	4E-46		0.04073976	[0.035-0.046] unit decrease	Illumina [27896057] (imputed)	N
1057	chr17	61959727	61959727	rs5821405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q23.3	GH2	rs5821405-ACTC	NR	2E-10		0.0218381	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1057	chr17	61959739	61959740	rs2955250	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q23.3	GH2	rs2955250-T	0.704	1E-15	(AA)	0.059	[0.045-0.073] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1057	chr17	61959739	61959740	rs2955250	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q23.3	GH2	rs2955250-T		1E-52				Affymetrix, Illumina [17972582] (imputed)	N
1057	chr17	61959739	61959740	rs2955250	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	17q23.3	GH2	rs2955250-T	0.704	8E-13	(AA)	0.064	[0.046-0.082] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1057	chr17	61959891	61959898	rs55978044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q23.3		rs55978044-G	NR	2E-11		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1057	chr17	61961560	61961561	rs2665828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.3		rs2665828-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1057	chr17	61964814	61964815	rs28386778	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	17q23.3	GH2, GSH2	rs28386778-?		6E-6				Illumina [2668805]	N
1057	chr17	61965042	61965043	rs2727301	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q23.3	ACE	rs2727301-T	0.7538	1E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1057	chr17	61966464	61966465	rs2665838	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.3	CSH1/GH1	rs2665838-C	0.73	5E-25		0.042	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1057	chr17	61976010	61976011	rs201981153	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q23.3	CSH1, CSHL1	rs201981153-?	NR	5E-22		0.16150656	[0.13-0.19] unit decrease	Illumina [27896057] (imputed)	N
1057	chr17	61977247	61977248	rs2854160	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.3	NR	rs2854160-?	NR	2E-6		0.02972986	[0.018-0.042] unit increase	Illumina [34656550] (imputed)	N
1057	chr17	61977247	61977248	rs2854160	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	17q23.3	CSH1	rs2854160-T	0.54	2E-12		0.036	[0.024-0.048] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1057	chr17	61977247	61977248	rs2854160	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	17q23.3	intergenic	rs2854160-T	0.21	5E-8		0.053	[0.033-0.073] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1057	chr17	61978547	61978548	rs2941551	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	17q23.3	CSH1	rs2941551-G	0.27	3E-14		1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1057	chr17	61978606	61978607	rs554808159	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	17q23.3		rs554808159-T	NR	4E-9				Illumina [1084750]	N
1057	chr17	61987404	61987405	rs2006122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.3	CSHL1	rs2006122-T	NR	3E-24		0.0323111	[0.026-0.039] unit increase	Affymetrix [321016] (imputed)	N
1057	chr17	61987404	61987405	rs2006122	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17q23.3	CSHL1	rs2006122-T	0.27	6E-9		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1057	chr17	61993136	61993137	rs3020619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	CSHL1	rs3020619-G	NR	4E-19		0.0310065	[0.024-0.038] unit increase	Affymetrix [323123] (imputed)	N
1057	chr17	61993136	61993137	rs3020619	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q23.3	CSHL1	rs3020619-G	0.2715	8E-9		0.434	[0.29-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1057	chr17	61993136	61993137	rs3020619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs3020619-?	NR	3E-163				NR [~ 8900000] (imputed)	N
1057	chr17	61994095	61994096	rs1974435	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q23.3	NHSL1	rs1974435-?		1E-8				NR [7428630] (imputed)	N
1057	chr17	61995169	61995170	rs5388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q23.3	NR	rs5388-T	NR	2E-114		0.2765	[0.25-0.3] unit increase	Affymetrix [9000000] (imputed)	N
1057	chr17	61996182	61996183	rs9282699	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q23.3	GH1	rs9282699-C	0.0206991438476257	9E-6	(G_Alloprevotella_HB)	1.06786	[0.6-1.54] unit increase	Illumina [7711310] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q23.3		rs2005172-C	NR	3E-16		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	GH1	rs2005172-A	0.3603	2E-128		0.048	[0.044-0.052] unit decrease	Affymetrix [18391927] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	17q23.3	NR	rs2005172-C	0.641109	2E-15		0.0803283	[0.06-0.1] unit increase	Affymetrix [21375087] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q23.3	NR	rs2005172-?	NR	8E-14	(female)	0.18928	[0.14-0.24] unit increase	Affymetrix [7794483] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q23.3	NR	rs2005172-?	NR	3E-26		0.2464	[0.2-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1057	chr17	61996254	61996255	rs2005172	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q23.3	NR	rs2005172-?	NR	2E-15	(male)	0.29124	[0.22-0.36] unit increase	Affymetrix [7794483] (imputed)	N
1057	chr17	61996272	61996273	rs11568828	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	GH1	rs11568828-T	0.8826	8E-81		0.0597	[0.054-0.066] unit increase	Affymetrix [18391927] (imputed)	N
1058	chr17	61999504	61999505	rs2262046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q23.3		rs2262046-C	NR	4E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1058	chr17	62004738	62004738	rs144724110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.3	CD79B	rs144724110-G	NR	3E-17		0.0249622	[0.019-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1058	chr17	62007497	62007498	rs2070776	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	17q23.3	NR	rs2070776-?	NR	8E-6		0.02563818	[0.014-0.037] unit increase	Illumina [34656550] (imputed)	N
1058	chr17	62007497	62007498	rs2070776	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	17q23.3	CD79B	rs2070776-A	0.346	6E-41		0.042	[0.036-0.048] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1058	chr17	62007497	62007498	rs2070776	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q23.3	GH region	rs2070776-?	NR	9E-9	(Conditioned on rs2665838)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1058	chr17	62008317	62008318	rs2320125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q23.3	NR	rs2320125-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1058	chr17	62008317	62008318	rs2320125	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q23.3	NR	rs2320125-T	0.35	2E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix [2446094] (imputed)	N
1058	chr17	62008317	62008318	rs2320125	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q23.3	NR	rs2320125-T	0.35	5E-8				Affymetrix [2446094] (imputed)	N
1058	chr17	62008317	62008318	rs2320125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q23.3	NR	rs2320125-T	0.3502	5E-12		0.013	[0.0093-0.0167] unit increase	NR [~ 27400000] (imputed)	N
1058	chr17	62009102	62009103	rs34357194	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	AC127029.3	rs34357194-T	0.9397	6E-16		0.0415	[0.032-0.051] unit decrease	Affymetrix [18391927] (imputed)	N
1058	chr17	62016453	62016453	rs397797581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q23.3		rs397797581-GCA	0.476437	1E-42		0.0278456	[0.024-0.032] unit increase	Illumina [13479295] (imputed)	N
1058	chr17	62016727	62016727	rs112489358	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q23.3	SCN4A	rs112489358-?	NR	3E-16		0.036042128	[0.027-0.045] unit increase	Illumina [27896057] (imputed)	N
1058	chr17	62017420	62017421	rs2532111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	SCN4A	rs2532111-A	NR	5E-14		0.0242712	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1058	chr17	62017420	62017421	rs2532111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q23.3		rs2532111-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1058	chr17	62017420	62017421	rs2532111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q23.3	SCN4A	rs2532111-A	0.3539	7E-9		0.0389	[0.026-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1058	chr17	62020347	62020348	rs2058194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	SCN4A	rs2058194-T	NR	2E-8		0.0172109	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1058	chr17	62021002	62021003	rs35501848	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD38dim B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q23.3		rs35501848-T	0.51204	6E-11		0.1647	[0.12-0.21] unit decrease	Illumina [18238174] (imputed)	N
1058	chr17	62021002	62021003	rs35501848	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q23.3		rs35501848-T	0.51204	7E-11		0.1633	[0.11-0.21] unit decrease	Illumina [18238174] (imputed)	N
1058	chr17	62021567	62021568	rs2877372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q23.3	SCN4A	rs2877372-C	NR	1E-12		0.0262494	[0.019-0.034] unit increase	Affymetrix [321016] (imputed)	N
1058	chr17	62021567	62021568	rs2877372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	SCN4A	rs2877372-C	NR	2E-13		0.0298092	[0.022-0.038] unit increase	Affymetrix [323123] (imputed)	N
1058	chr17	62023790	62023791	rs3785568	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q23.3	NR	rs3785568-T	0.80023	3E-9		0.0150268	[0.01-0.02] unit increase	NR [NR]	N
1058	chr17	62033276	62033277	rs35993844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q23.3	SCN4A	rs35993844-G	NR	2E-8		0.041341	[0.027-0.056] unit increase	Affymetrix [323123] (imputed)	N
1058	chr17	62048706	62048707	rs2302237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs2302237-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1058	chr17	62121525	62121526	rs199650082	28388302	Petros Z	2017-04-01	OMICS	Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs.	Liver injury in anti-retroviral drug treated HIV	14 Ethiopian cases with HIV, 293 Ethiopian controls with HIV.	7 Ethiopian cases with HIV, 66 Ethiopian controls with HIV.	17q23.3	ERN1	rs199650082-T	0.03	2E-6		18.2	[7.1-46.9]	Illumina [662282]	N
1059	chr17	62141415	62141416	rs56201815	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q23.3		rs56201815-?	NR	2E-12		5.21		NR [98334]	N
1059	chr17	62144270	62144271	rs199828702	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q23.3		rs199828702-C	0.01256	4E-11		0.8207	[0.58-1.06] unit increase	Illumina [17926607] (imputed)	N
1059	chr17	62144270	62144271	rs199828702	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q23.3		rs199828702-C	0.01256	3E-18		1.078	[0.84-1.32] unit increase	Illumina [17926607] (imputed)	N
1059	chr17	62147191	62147192	rs196941	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q23.3	ERN1	rs196941-?	NR	8E-10	(subset analysis)			Illumina [130052]	N
1059	chr17	62181989	62181990	rs57891429	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	17q23.3		rs57891429-C	0.1197	1E-10		0.2774	[0.19-0.36] unit decrease	Illumina [17926607] (imputed)	N
1059	chr17	62201373	62201374	rs11655898	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q23.3	NR	rs11655898-C	0.0695	6E-10		0.0594	[0.041-0.078] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1059	chr17	62203058	62203059	rs57767539	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q23.3	NR	rs57767539-G	0.9362	7E-12		0.0622	[0.044-0.08] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1059	chr17	62203303	62203304	rs60276348	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q23.3	ACE	rs60276348-T	0.1397	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1059	chr17	62204047	62204047	rs11418239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17q23.3		rs11418239-GA	NR	2E-14		0.0272	[0.02-0.034] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1059	chr17	62206298	62206299	rs76708468	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q23.3	ERN1	rs76708468-T	0.961462	3E-12		0.00421589	[0.003-0.0054] unit increase	Affymetrix [13995440] (imputed)	N
1059	chr17	62206298	62206299	rs76708468	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q23.3	NR	rs76708468-T	0.961201	5E-9		0.012673	[0.0086-0.0168] unit increase	Affymetrix [16582909] (imputed)	N
1059	chr17	62206298	62206299	rs76708468	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q23.3	NR	rs76708468-T	0.961201	2E-8		0.0133113	[0.0087-0.0179] unit increase	Affymetrix [16582965] (imputed)	N
1059	chr17	62232712	62232713	rs12450577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs12450577-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1060	chr17	62287178	62287179	rs147329541	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	17q23.3	NR	rs147329541-?	NR	4E-6		0.4229	[0.24-0.6] unit decrease	Illumina [at least 560000] (imputed)	N
1060	chr17	62301918	62301919	rs1830052	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	17q23.3	NR	rs1830052-T	0.1739	3E-6	(male)	0.0721	[0.042-0.102] unit increase	NR [NR] (imputed)	N
1060	chr17	62335074	62335075	rs4968711	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	17q23.3	TEX2	rs4968711-T	NR	4E-6	(male)	0.0717	[0.041-0.102] unit decrease	NR [NR] (imputed)	N
1060	chr17	62356107	62356108	rs4968712	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	17q23.3	TEX2, PECAM1	rs4968712-A	0.1671	1E-6	(male)	0.0763	[0.045-0.107] unit increase	NR [NR] (imputed)	N
1060	chr17	62371803	62371804	rs12937767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q23.3	NR	rs12937767-G	0.483814	3E-43				Affymetrix, Illumina [17210439] (imputed)	N
1060	chr17	62381713	62381714	rs6504213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.3		rs6504213-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1060	chr17	62381713	62381714	rs6504213	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q23.3	PECAM1	rs6504213-T	0.3926	3E-8		0.1442	[0.093-0.195] mmHg decrease	Affymetrix [NR] (imputed)	N
1060	chr17	62384649	62384650	rs11356207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q23.3	RPL31P57	rs11356207-C	0.548854	3E-34		0.027731324	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr17	62384649	62384650	rs11356207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	17q23.3	RPL31P57	rs11356207-C	0.5494	1E-14		0.02727351	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1060	chr17	62386481	62386482	rs112360115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q23.3	RPL31P57	rs112360115-T	0.126689	2E-9		0.020414712	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr17	62387090	62387091	rs1867624	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q23.3	PECAM1	rs1867624-T	0.6211	8E-11		0.0369	[0.026-0.048] unit increase	NR [8041861] (imputed)	N
1061	chr17	62392402	62392403	rs11079536	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	17q23.3	PECAM1	rs11079536-T	0.53356	2E-7		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
1061	chr17	62399871	62399872	rs9902260	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	17q23.3	PECAM1	rs9902260-?	NR	3E-9		0.0652485	[0.044-0.087] unit increase	Illumina [19707525] (imputed)	N
1061	chr17	62399999	62400000	rs1050382	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q23.3	PECAM1	rs1050382-?	NR	1E-14		0.0383576	[0.029-0.048] unit increase	Illumina [4804024] (imputed)	N
1061	chr17	62399999	62400000	rs1050382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q23.3	NR	rs1050382-G	0.46213	3E-45		0.02711	[0.023-0.031] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1061	chr17	62401117	62401118	rs2812	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	17q23.3	PECAM1	rs2812-C	0.54	1E-8		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
1061	chr17	62401964	62401965	rs9892152	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	17q23.3	PECAM1	rs9892152-T	0.4717	6E-11		0.033	[0.023-0.043] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1061	chr17	62402725	62402726	rs9897901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q23.3		rs9897901-T	0.70461396	1E-10		0.094995946	[0.066-0.124] unit increase	Illumina [13427135] (imputed)	N
1061	chr17	62407558	62407559	rs7225219	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q23.3	PECAM1	rs7225219-A	0.6584	2E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix [18391927] (imputed)	N
1061	chr17	62407558	62407559	rs7225219	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.3	PECAM1, MILR1	rs7225219-T		3E-9		0.248	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1061	chr17	62407558	62407559	rs7225219	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q23.3	PECAM1, MILR1	rs7225219-T		8E-7		0.137	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1061	chr17	62408119	62408119	rs11388542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q23.3		rs11388542-CT	NR	2E-10		0.0642	[0.044-0.084] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1061	chr17	62408298	62408299	rs6504218	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	17q23.3	intergenic	rs6504218-?	NR	1E-6				Illumina [574919]	N
1061	chr17	62476450	62476451	rs17850455	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	17q23.3	NR	rs17850455-G	0.00319489	2E-18		0.091	[0.071-0.111] unit increase	Affymetrix [23037915] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q23.3	NR	rs17650301-C	0.29376	1E-9		0.005364	[0.0036-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q23.3	NR	rs17650301-C	0.29376	3E-7		0.00496074	[0.003-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q23.3	POLG2	rs17650301-A	0.70405	2E-17		0.01721	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q23.3		rs17650301-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17q23.3		rs17650301-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1061	chr17	62479272	62479273	rs17650301	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q23.3		rs17650301-?	NR	2E-17		0.0183738	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1061	chr17	62483930	62483931	rs113252144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs113252144-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1061	chr17	62497963	62497964	rs77672322	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q23.3	DDX5	rs77672322-T	0.0264	3E-9		0.0451	[0.03-0.06] unit decrease	Affymetrix [19819130] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q23.3		rs1991401-G	NR	8E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q23.3	CEP95/DDX5	rs1991401-A	0.688429	1E-8		1.0379757	1.0247751589764-1.05134626607123]	NR [9572556] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q23.3	KCNH6, POLG2, DDX5	rs1991401-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q23.3	NR	rs1991401-G	0.312867	1E-8		0.00661387	[0.0043-0.009] unit increase	Affymetrix [16582621] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q23.3	NR	rs1991401-G	0.312867	2E-7		0.00657808	[0.004-0.0091] unit increase	Affymetrix [16582614] (imputed)	N
1061	chr17	62502434	62502435	rs1991401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q23.3		rs1991401-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1061	chr17	62506279	62506280	rs57166100	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q23.3	NR	rs57166100-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1061	chr17	62516958	62516959	rs148050755	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	17q23.3	CEP95, SMURF2	rs148050755-C		3E-11		0.774	[NR] unit decrease	Illumina [24111857] (imputed)	N
1062	chr17	62534458	62534459	rs8082122	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	17q23.3	CEP95	rs8082122-C		4E-8				Affymetrix, Illumina [17972582] (imputed)	N
1062	chr17	62534458	62534459	rs8082122	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	17q23.3	CEP95	rs8082122-C	0.695	2E-7	(AA)	0.047	[0.029-0.065] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1062	chr17	62535595	62535596	rs139126928	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q23.3	SMURF2	rs139126928-G	0.0168510569721614	2E-6	(F_Enterococcaceae_HB)	1.457	[0.86-2.06] unit increase	Illumina [7711310] (imputed)	N
1062	chr17	62589577	62589578	rs80215473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q23.3		rs80215473-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1062	chr17	62600934	62600935	rs111854052	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	17q24.1	SMURF2	rs111854052-A	0.99	9E-6	(Age 20-60 years)	0.3228	[0.18-0.47] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1063	chr17	62676148	62676149	rs6504249	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	17q24.1	SMURF2, PLEKHM1P	rs6504249-?	NR	9E-9		0.072	[0.097-0.048] unit decrease	Illumina [12039492] (imputed)	N
1063	chr17	62681504	62681505	rs11656678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q24.1		rs11656678-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1063	chr17	62686729	62686730	rs11653958	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.1	SMURF2	rs11653958-A	0.7425	3E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1063	chr17	62686729	62686730	rs11653958	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.1	SMURF2	rs11653958-A	0.7425	9E-13		0.0197	[0.014-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1063	chr17	62726706	62726707	rs2676298	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.1	intergenic	rs2676298-T	0.853	2E-23		0.0269	[0.022-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
1063	chr17	62739573	62739574	rs9900062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.1		rs9900062-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1063	chr17	62739573	62739574	rs9900062	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	17q24.1	PLEKHM1P	rs9900062-A	0.71	5E-6		1.15	[0.66-1.64] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1063	chr17	62761638	62761639	rs80069184	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Pneumonia (90-day mortality)	738 European ancestry cases, 6,460 European ancestry controls	NA	17q24.1	ARHGAP27P1-BPTFP1-KPNA2P3	rs80069184-C	0.99	1E-8		0.15	[0.097-0.203] unit decrease	NR [NR]	N
1065	chr17	62971596	62971597	rs35122942	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q24.1	NR	rs35122942-?		2E-11				NR [7428630] (imputed)	N
1065	chr17	62971596	62971597	rs35122942	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q24.1	NR	rs35122942-?		3E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1065	chr17	62971596	62971597	rs35122942	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q24.1	NR	rs35122942-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1065	chr17	62971596	62971597	rs35122942	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q24.1	NR	rs35122942-?		6E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1065	chr17	62983302	62983303	rs4791249	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q24.1	GNA13	rs4791249-?		3E-10				NR [7428630] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	4E-7				Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	3E-7				Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	2E-7		0.055	[0.034-0.076] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	1E-7		0.0548	[0.034-0.075] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	7E-8		0.0555	[0.035-0.076] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62986560	62986561	rs12941507	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	17q24.1	AMZ2P1	rs12941507-C	0.91	8E-8		0.0561	[0.036-0.077] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1065	chr17	62991652	62991653	rs2869067	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q24.1	GNA13	rs2869067-A	0.904	8E-6		0.0506	[0.028-0.073] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1065	chr17	62991862	62991863	rs35444681	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.1		rs35444681-A	0.09	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
1065	chr17	62998022	62998023	rs10853057	24736177	Sprooten E	2014-04-13	Neuroimage	Common genetic variants and gene expression associated with white matter microstructure in the human brain.	White matter microstructure (global fractional anisotropy)	727 Mexican American individuals from 65 families, 49 Mexican American individuals	NA	17q24.1	GNA13	rs10853057-?		3E-10				Illumina [929187]	N
1066	chr17	63063411	63063412	rs1476171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q24.1	NR	rs1476171-C	0.763783	6E-10		0.01627217	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr17	63063411	63063412	rs1476171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q24.1	NR	rs1476171-C	0.763804	5E-10		0.016403943	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1066	chr17	63068975	63068976	rs7218921	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	17q24.1	intergenic	rs7218921-?	0.44	6E-6	(men)	0.24	NR unit decrease	Illumina [628376]	N
1066	chr17	63068975	63068976	rs7218921	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	17q24.1	intergenic	rs7218921-?	0.44	2E-6	(model 2)	0.151	NR unit decrease	Illumina [628376]	N
1067	chr17	63204546	63204547	rs144542704	30067105	Chang LC	2018-08-01	Expert Opin Drug Saf	Thyrotropin receptor antibodies and a genetic hint in antithyroid drug-induced adverse drug reactions.	Adverse response to antithyroid drugs in Graves disease	24 East Asian ancestry cases, 423 East Asian ancestry controls	45 East Asian ancestry cases, 137 East Asian ancestry controls	17q24.1	RGS9	rs144542704-?		4E-8		5.549	[2.835-10.86]	Affymetrix [574162]	N
1067	chr17	63245584	63245585	rs7342953	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Large artery stroke	1,877 European ancestry cases, 12,285 European ancestry controls	1,130 European ancestry cases, 17,970 European ancestry controls	17q24.1		rs7342953-?	NR	6E-6		4.508	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1067	chr17	63275017	63275018	rs16961974	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.1		rs16961974-?	NR	2E-33		0.0279328	[0.023-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1067	chr17	63275017	63275018	rs16961974	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.1	RGS9	rs16961974-T	0.739127	2E-9	(women)	0.0311768	[0.021-0.042] unit increase	NR [17166351] (imputed)	N
1067	chr17	63275017	63275018	rs16961974	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.1	RGS9	rs16961974-T	0.73846	2E-12		0.0262795	[0.019-0.034] unit increase	NR [17166351] (imputed)	N
1067	chr17	63278037	63278038	rs9896306	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.1	RGS9	rs9896306-C	0.729488	3E-34		0.0254852	[0.021-0.03] unit increase	NR [13737936] (imputed)	N
1067	chr17	63278037	63278038	rs9896306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.1		rs9896306-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1067	chr17	63278037	63278038	rs9896306	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.1		rs9896306-?	NR	3E-35		0.0283541	[0.024-0.033] unit increase	Affymetrix [20259828] (imputed)	N
1067	chr17	63290959	63290960	rs72853511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.1		rs72853511-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1068	chr17	63320204	63320205	rs111610561	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	17q24.1	NR	rs111610561-T	0.05556	2E-6		1.068	NR unit increase	Affymetrix [3101376] (imputed)	N
1068	chr17	63357319	63357320	rs1558344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q24.1	Intergenic	rs1558344-A	0.2455	2E-9	(MTAG)	0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1068	chr17	63357816	63357817	rs2159544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q24.1	Intergenic	rs2159544-A	0.2451	3E-9	(MTAG)	0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1068	chr17	63431477	63431478	rs7210545	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q24.1	NR	rs7210545-?	NR	1E-20				Affymetrix [NR]	N
1069	chr17	63440752	63440753	rs7222794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q24.1		rs7222794-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1069	chr17	63440752	63440753	rs7222794	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q24.1	NR	rs7222794-C	0.245103	2E-11		0.0243735	[0.017-0.031] unit increase	NR [19129689] (imputed)	N
1069	chr17	63518524	63518525	rs7406690	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q24.1	AXIN2	rs7406690-?	NR	1E-8		1.0919415	NR	Affymetrix [9154080] (imputed)	N
1069	chr17	63527093	63527094	rs4076118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q24.1		rs4076118-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1069	chr17	63534537	63534538	rs4541111	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.1	AXIN2	rs4541111-C	0.485694	3E-14		0.0141884	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1069	chr17	63549924	63549925	rs11869513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.1		rs11869513-?	NR	5E-27				NR [~ 8900000] (imputed)	N
1069	chr17	63549978	63549979	rs11869530	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.1		rs11869530-?	NR	7E-40		0.0269089	[0.023-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1069	chr17	63549978	63549979	rs11869530	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.1	AXIN2	rs11869530-G	0.366652	3E-9	(men)	0.0285806	[0.018-0.039] unit decrease	NR [17166351] (imputed)	N
1069	chr17	63549978	63549979	rs11869530	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.1	AXIN2	rs11869530-G	0.3653	1E-14		0.0265464	[0.02-0.033] unit decrease	NR [17166351] (imputed)	N
1069	chr17	63549978	63549979	rs11869530	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.1	AXIN2	rs11869530-G	0.36412	2E-8	(women)	0.0274907	[0.018-0.037] unit decrease	NR [17166351] (imputed)	N
1069	chr17	63550796	63550797	rs9895291	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q24.1	AXIN2	rs9895291-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
1069	chr17	63551383	63551384	rs4790930	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q24.1	AXIN2	rs4790930-?	NR	1E-10		0.019971667	[0.014-0.026] unit decrease	Illumina [27896057] (imputed)	N
1069	chr17	63551947	63551948	rs72856681	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	17q24.1	NR	rs72856681-A	0.06	8E-6	(IFNalpha_CXCL10_of_CD8p_T)			Illumina [5084123] (imputed)	N
1069	chr17	63556401	63556402	rs12452505	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.1	AC004805.1	rs12452505-C	0.8578	7E-23		0.0268	[0.022-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1069	chr17	63556401	63556402	rs12452505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.1		rs12452505-?	NR	2E-65				NR [~ 8900000] (imputed)	N
1069	chr17	63561591	63561592	rs757558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q24.1		rs757558-T	NR	2E-8		0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1069	chr17	63563124	63563125	rs11657548	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	17q24.1	NR	rs11657548-T	0.1554	3E-6		0.1926	[0.11-0.27] unit decrease	Illumina [10677593] (imputed)	N
1069	chr17	63563280	63563281	rs8073426	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (increased appetite)	760 Japanese ancestry female cases, 4,974 Japanese ancestry female controls	903 Japanese ancestry female cases, 4,711 Japanese ancestry female controls	17q24.1	NR	rs8073426-C	0.378918051	4E-7		0.20019282	[0.12-0.28] unit decrease	Affymetrix [536506]	N
1070	chr17	63606207	63606208	rs7218547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q24.1		rs7218547-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1070	chr17	63619921	63619922	rs7207885	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	17q24.1		rs7207885-G	0.703455	1E-6		0.00989653	[0.0059-0.0139] unit increase	Illumina [13900000] (imputed)	N
1070	chr17	63629237	63629238	rs9915454	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	17q24.1	NR	rs9915454-A	NR	5E-6		1.13	[1.07-1.19]	Illumina [462430]	N
1070	chr17	63642541	63642542	rs8074751	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	17q24.1	CCDC46	rs8074751-?	0.61	1E-6		1.45	[NR]	Illumina [835136]	N
1070	chr17	63650893	63650894	rs112055822	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOH	5,343 Icelandic ancestry individuals	NA	17q24.1		rs112055822-T	0.01671	4E-12		0.459436	[0.33-0.59] unit decrease	Illumina [7506463] (imputed)	N
1070	chr17	63676456	63676457	rs148933878	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.1	NR	rs148933878-T	0.01742	2E-8	(CIITA)	0.3856	NR unit increase	Illumina [1671387] (imputed)	N
1070	chr17	63693832	63693833	rs232138	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	17q24.1	CEP112	rs232138-C	0.579796	6E-13		1.0322345	NR	Affymetrix [~ 9600000] (imputed)	N
1071	chr17	63708320	63708321	rs232159	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17q24.1	NR	rs232159-C	0.34936900000000004	1E-8		0.0175235	[0.012-0.023] unit increase	Affymetrix [16580851] (imputed)	N
1071	chr17	63709262	63709263	rs16962650	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.1	NR	rs16962650-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1071	chr17	63723314	63723315	rs232094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.1		rs232094-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1071	chr17	63737757	63737758	rs186204465	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	17q24.1		rs186204465-?	NR	1E-10		3.3107	[2.3-4.32] unit increase	Affymetrix [NR] (imputed)	N
1071	chr17	63740544	63740545	rs181929163	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	17q24.1	CEP112	rs181929163-?	NR	2E-8	(Alpha-2 Globulin)			Illumina [up to 10879115] (imputed)	N
1071	chr17	63741774	63741775	rs4625756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q24.1		rs4625756-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1071	chr17	63743649	63743650	rs11650175	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	17q24.1	CEP112	rs11650175-?	NR	1E-14		1.1223345	[1.09-1.16]	Illumina [13537761] (imputed)	N
1071	chr17	63762825	63762825	rs139229209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q24.1	CEP112	rs139229209-TA	0.340726	1E-11		0.01657787	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1071	chr17	63771078	63771079	rs9972944	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q24.1	CEP112	rs9972944-A	0.4049	7E-10		0.0363	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1071	chr17	63791482	63791483	rs8079658	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q24.1	CEP112	rs8079658-A	0.793	5E-6	(AA)	0.091	NR unit decrease	Illumina [NR] (imputed)	N
1071	chr17	63822356	63822357	rs62065084	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q24.1	NR	rs62065084-C	0.258093	1E-14		0.0286261	[0.021-0.036] unit increase	NR [19129689] (imputed)	N
1072	chr17	63850775	63850776	rs746627	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	17q24.1	NR	rs746627-T	0.3233	2E-9	(European)	0.0414	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1072	chr17	63854424	63854425	rs7211723	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	17q24.1	CEP112	rs7211723-?	NA	3E-9		1.62	[1.09-2.15] unit decrease	Affymetrix [5541230] (imputed)	N
1072	chr17	63883594	63883595	rs147178973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	17q24.1	NR	rs147178973-?	NR	9E-7		0.06542	[0.039-0.092] unit increase novel	Illumina [6108953] (imputed)	N
1072	chr17	63903118	63903119	rs7214750	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q24.1	CEP112, APOH	rs7214750-?		1E-11				NR [7428630] (imputed)	N
1072	chr17	63906955	63906955	rs143442432	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q24.1	NR	rs143442432-?	0.0711	1E-10	(Cuneus)	13.104494	[9.11-17.1] unit decrease	Affymetrix, Illumina [NR]	N
1072	chr17	63912573	63912574	rs11652557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	17q24.1		rs11652557-A	0.08	3E-6				NR [13131314] (imputed)	N
1072	chr17	63912573	63912574	rs11652557	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q24.1		rs11652557-A	0.08	5E-27		10.77	z score increase	Affymetrix [9061022] (imputed)	N
1072	chr17	63912573	63912574	rs11652557	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q24.1	NR	rs11652557-A	0.07	1E-17				NR [9056863] (imputed)	N
1072	chr17	63912573	63912574	rs11652557	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17q24.1		rs11652557-?	NR	5E-14				NR [9705931] (imputed)	N
1072	chr17	63914749	63914750	rs1420791	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q24.1		rs1420791-G	0.08	2E-60		16.38	z score increase	Affymetrix [9061022] (imputed)	N
1072	chr17	63914749	63914750	rs1420791	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.1		rs1420791-G	0.08	2E-22		9.72	z score increase	Affymetrix [9061022] (imputed)	N
1072	chr17	63914749	63914750	rs1420791	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q24.1	NR	rs1420791-G	0.0706	1E-17				NR [9056863] (imputed)	N
1072	chr17	63914749	63914750	rs1420791	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q24.1	NR	rs1420791-A	0.9288	9E-10	(Pericalcarine)	12.250749	[8.33-16.17] unit increase	Affymetrix, Illumina [NR]	N
1072	chr17	63944598	63944599	rs9893012	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	17q24.1	NR	rs9893012-G	0.08875	4E-6		4.62188	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
1072	chr17	63953354	63953355	rs118011793	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		17q24.1	CEP112	rs118011793-A	0.012	5E-6		2.037	[1.18-2.9] unit increase	Illumina [640625] (imputed)	N
1073	chr17	64002906	64002907	rs12942897	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q24.1	NR	rs12942897-C	0.433593	6E-10		0.0203442	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
1073	chr17	64027345	64027346	rs11655503	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q24.1	NR	rs11655503-?		2E-9				NR [7428630] (imputed)	N
1073	chr17	64051725	64051726	rs9904045	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q24.1	CEP112	rs9904045-T	0.997	2E-6	(AA)	0.884	NR unit increase	Illumina [NR] (imputed)	N
1073	chr17	64058428	64058429	rs28613416	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	17q24.1	NR	rs28613416-?		5E-12				NR [7428630] (imputed)	N
1073	chr17	64058428	64058429	rs28613416	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	17q24.1	NR	rs28613416-?		2E-11				NR [7428630] (imputed)	N
1074	chr17	64098544	64098545	rs2319125	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	17q24.1	CEP112	rs2319125-C	0.46	1E-6		0.42	unit increase	Illumina [283437]	N
1074	chr17	64130793	64130794	rs77620153	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TBX22	5,365 Icelandic ancestry individuals	NA	17q24.1		rs77620153-A	0.05295	4E-13		0.303585	[0.22-0.39] unit decrease	Illumina [7506463] (imputed)	N
1074	chr17	64131709	64131710	rs9910950	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	17q24.1	CCDC46	rs9910950-?	NR	6E-11	(Anti-?2GPI IgG)			Affymetrix [at least 662405]	N
1074	chr17	64131901	64131902	rs9911603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q24.1	NR	rs9911603-T	NR	3E-14		0.0398	[0.03-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64132845	64132846	rs9891968	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.1	CEP112	rs9891968-A	0.05	5E-15	(NAD-dependent protein deacetylase sirtuin-2, SIRT2.5030.52.1)	0.43	[0.31-0.55] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64133070	64133071	rs117525469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.1		rs117525469-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1074	chr17	64133725	64133726	rs7209395	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	17q24.1	CEP112	rs7209395-T	0.34	7E-7		0.44	unit increase	Illumina [283437]	N
1074	chr17	64133725	64133726	rs7209395	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	17q24.1	NR	rs7209395-G	0.23	3E-6	(females + males)	1.75	[NR] kg increase	Illumina [318237]	N
1074	chr17	64157854	64157855	rs9895407	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOH	5,343 Icelandic ancestry individuals	NA	17q24.1		rs9895407-C	0.05304	3E-37		0.491059	[0.42-0.57] unit decrease	Illumina [7506463] (imputed)	N
1074	chr17	64164558	64164559	rs7213215	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.1	CEP112	rs7213215-G	0.05	7E-15	(Dickkopf-related protein 4, DKK4.3365.7.2)	0.43	[0.31-0.55] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64176114	64176115	rs74531840	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRR	5,363 Icelandic ancestry individuals	NA	17q24.1		rs74531840-A	0.05313	2E-34		0.503429	[0.42-0.58] unit decrease	Illumina [7506463] (imputed)	N
1074	chr17	64186987	64186988	rs9902706	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300C	5,368 Icelandic ancestry individuals	NA	17q24.1		rs9902706-T	0.05304	7E-19		0.382548	[0.3-0.47] unit increase	Illumina [7506463] (imputed)	N
1074	chr17	64190683	64190684	rs9905408	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C10orf35	5,364 Icelandic ancestry individuals	NA	17q24.1		rs9905408-C	0.05295	3E-54		0.636389	[0.56-0.72] unit increase	Illumina [7506463] (imputed)	N
1074	chr17	64190919	64190920	rs9906486	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPP1R3B	5,365 Icelandic ancestry individuals	NA	17q24.1		rs9906486-T	0.05313	3E-19		0.384736	[0.3-0.47] unit decrease	Illumina [7506463] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	8E-9		0.0657939	[0.043-0.088] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	1E-11		0.0763715	[0.054-0.098] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	8E-9		0.0659658	[0.044-0.088] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	5E-13		0.0815114	[0.059-0.104] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	6E-16		0.0895931	[0.068-0.111] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	1E-11		0.073466	[0.052-0.095] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	2E-10		0.0729222	[0.051-0.095] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	2E-8		0.0650602	[0.042-0.088] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	2E-9		0.0688522	[0.046-0.091] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	1E-8		0.0661348	[0.043-0.089] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	1E-9		0.0701057	[0.048-0.093] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	2E-11		0.0771789	[0.055-0.1] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	3E-9		0.0689363	[0.046-0.092] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.1		rs75003668-A	0.966646	2E-12		0.0799921	[0.058-0.102] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64195430	64195431	rs75003668	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	17q24.1		rs75003668-G	0.034	1E-9		1.25		Affymetrix [15679186] (imputed)	N
1074	chr17	64198639	64198640	rs11651658	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	17q24.2	NR	rs11651658-C	0.069336	9E-7		4.91763	[NR] z score increase	Affymetrix [~ 8600000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801690-C	0.945726	5E-8		0.0466391	[0.03-0.063] unit increase	NR [11722792] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT2	5,353 Icelandic ancestry individuals	NA	17q24.2		rs1801690-G	0.05428	4E-30		0.463315	[0.38-0.54] unit increase	Illumina [7506463] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	17q24.2		rs1801690-G	0.0597	1E-14		0.1	[0.08-0.12] unit increase	Illumina [26711992] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q24.2	APOH	rs1801690-G	0.055	8E-17		8.33	z-score increase	Affymetrix [4314223] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q24.2	APOH	rs1801690-G	0.059118658279584	3E-11		0.0648	[0.046-0.084] SD decrease	Illumina [22400000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	7E-431	(KISS1, 6606_61_3)	2.0319796	[1.96-2.11] unit decrease	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	7E-25	(APOH, 8288_27_3)	0.552081	[0.45-0.66] unit increase	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	7E-20	(PTPRR, 6361_49_3)	0.48482403	[0.38-0.59] unit increase	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	4E-11	(DHX8, 11601_26_3)	0.35040462	[0.25-0.45] unit increase	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	3E-161	(VSIG2, 8018_43_3)	1.3616853	[1.27-1.45] unit increase	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	2E-33	(C10orf35, 8220_15_3)	0.637501	[0.53-0.74] unit decrease	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	2E-19	(SIRT2, 5030_52_1)	0.4785765	[0.38-0.58] unit decrease	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	1E-9	(PPP1R3B, 12768_3_3)	0.3279194	[0.22-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	NR	rs1801690-C	0.94328125	1E-10	(CD300C, 13406_161_3)	0.3467273	[0.24-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs1801690-G	0.051	8E-22	(V-set and immunoglobulin domain-containing protein 2, VSIG2.8018.43.3)	0.53	[0.43-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	17q24.2	APOH	rs1801690-?	NR	1E-33		0.0815	[0.068-0.095] unit increase novel	Illumina [6108953] (imputed)	N
1074	chr17	64208284	64208285	rs1801690	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	17q24.2	APOH	rs1801690-?	NR	5E-13		0.08555	[0.062-0.109] unit increase novel	Illumina [6108953] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-11		0.0772409	[0.055-0.099] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969552	4E-34		0.141633	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969467	1E-8		0.0644742	[0.042-0.087] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-22		0.113321	[0.091-0.136] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-13		0.0858176	[0.063-0.108] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-29		0.128126	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969475	7E-31		0.137917	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17q24.2		rs1801689-A	0.9698	4E-36		0.152522	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-24		0.116295	[0.094-0.139] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-13		0.0846132	[0.062-0.107] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-24		0.116881	[0.094-0.139] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-33		0.139567	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-19		0.104264	[0.082-0.127] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-13		0.0860353	[0.063-0.109] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-18		0.100552	[0.078-0.123] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-15		0.0927838	[0.07-0.115] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	7E-28		0.126517	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-8		0.0654276	[0.042-0.088] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	17q24.2		rs1801689-A	0.96948	1E-18		0.0981923	[0.076-0.12] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	17q24.2		rs1801689-A	0.96948	2E-9		0.069546	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q24.2		rs1801689-A	0.96948	3E-8		0.0641739	[0.042-0.087] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q24.2		rs1801689-A	0.96948	5E-10		0.0714073	[0.049-0.094] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-15		0.0897628	[0.067-0.112] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-10		0.0747415	[0.051-0.098] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-28		0.127962	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-9		0.069668	[0.046-0.093] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-14		0.0891825	[0.067-0.112] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-11		0.0786598	[0.056-0.101] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	6E-22		0.110771	[0.088-0.133] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	8E-10		0.0729028	[0.05-0.096] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969552	2E-28		0.128884	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-15		0.0905008	[0.068-0.113] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-14		0.0885428	[0.066-0.111] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	6E-29		0.127505	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-15		0.0903281	[0.068-0.113] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969475	5E-27		0.128006	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-10		0.0711442	[0.049-0.093] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17q24.2		rs1801689-A	0.9698	2E-29		0.135524	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-13		0.0840626	[0.061-0.107] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-10		0.0722443	[0.05-0.094] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-10		0.073369	[0.051-0.096] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-21		0.110233	[0.088-0.133] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-13		0.0862571	[0.063-0.109] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-15		0.0921467	[0.07-0.115] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-13		0.0846924	[0.062-0.107] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-23		0.115595	[0.093-0.138] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	7E-9		0.0653485	[0.043-0.087] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969552	3E-35		0.142283	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	8E-30		0.134183	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-9		0.070193	[0.047-0.094] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-28		0.123749	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	1E-15		0.0959261	[0.073-0.119] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969475	1E-43		0.159217	[0.14-0.18] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17q24.2		rs1801689-A	0.9698	1E-30		0.139843	[0.12-0.16] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	4E-13		0.0841611	[0.061-0.107] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-8		0.0599236	[0.039-0.081] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-15		0.0916299	[0.069-0.114] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-10		0.0723119	[0.05-0.095] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-9		0.0679353	[0.046-0.09] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969552	9E-36		0.143441	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-25		0.121329	[0.099-0.144] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	6E-29		0.125986	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969475	8E-44		0.16277	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17q24.2		rs1801689-A	0.9698	2E-35		0.150207	[0.13-0.17] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-9		0.0633564	[0.042-0.085] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	2E-18		0.101071	[0.078-0.124] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	5E-11		0.0764058	[0.054-0.099] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	6E-37		0.14216	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	17q24.2		rs1801689-A	0.969474	3E-15		0.0921397	[0.069-0.115] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q24.2		rs1801689-C	NR	8E-21		0.0638	[0.05-0.077] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q24.2		rs1801689-C	NR	6E-21		0.0649	[0.051-0.078] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q24.2		rs1801689-C	NR	6E-21		0.063	[0.05-0.076] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q24.2		rs1801689-C	NR	5E-32		0.0773	[0.064-0.09] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	17q24.2	APOH	rs1801689-?	NR	2E-22		0.0072	[0.0056-0.0088] unit increase	Affymetrix [21347608] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	17q24.2	APOH	rs1801689-?	NR	2E-32		0.0149	[0.012-0.017] unit increase	Affymetrix [21347608] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	17q24.2	APOH	rs1801689-A	0.969563	2E-39		0.0145378	[0.012-0.017] unit decrease	Affymetrix [13995440] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		17q24.2	APOH	rs1801689-A	NR	5E-56		0.06707	[0.055-0.079] nmol/l decrease	NR [19000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	4E-22		0.0679	[0.054-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	3E-25		0.0729	[0.059-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	7E-35		0.0912	[0.077-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	2E-40		0.0937	[0.08-0.107] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	5E-13		0.0569	[0.041-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	2E-34		0.0863	[0.073-0.1] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	2E-16		0.058	[0.044-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	8E-20		0.0642	[0.05-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	1E-21		0.0674	[0.054-0.081] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	1E-40		0.094	[0.08-0.108] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	NR	3E-33		0.0845	[0.071-0.098] unit increase	Affymetrix [9000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-C	0.0299438	2E-81				Affymetrix, Illumina [24588908] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q24.2	APOH	rs1801689-A	0.969458	2E-30		0.0662731	[0.055-0.078] unit increase	Affymetrix [NR] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q24.2	APOH	rs1801689-A	0.969449	2E-24		0.0619438	[0.05-0.074] unit decrease	Affymetrix [NR] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q24.2	APOH	rs1801689-A	0.969472	9E-27		0.0647127	[0.053-0.077] unit decrease	Affymetrix [NR] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q24.2	APOH	rs1801689-?	NR	2E-20		0.0714	[0.058-0.085] unit decrease	Affymetrix [5701386] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q24.2	APOH	rs1801689-?	NR	1E-30		0.0867	[0.073-0.1] unit increase	Affymetrix [5701386] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q24.2	NR	rs1801689-A	0.970103	3E-60		0.0379297	[0.033-0.043] unit increase	Affymetrix [16582909] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q24.2	NR	rs1801689-A	0.97016	6E-25		0.0336916	[0.027-0.04] unit increase	Affymetrix [16582621] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q24.2	NR	rs1801689-A	0.970103	3E-45		0.0372116	[0.032-0.042] unit increase	Affymetrix [16582965] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q24.2	NR	rs1801689-A	0.97016	2E-21		0.03343	[0.027-0.04] unit increase	Affymetrix [16582614] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	APOH	rs1801689-A	0.969	6E-23		0.0801	[0.064-0.096] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	APOH	rs1801689-A	0.9691	2E-30		0.0923	[0.077-0.108] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs1801689-C	0.03	5E-13	(NAD-dependent protein deacetylase sirtuin-2, SIRT2.5030.52.1)	0.51	[0.37-0.65] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs1801689-C	0.03	2E-13	(ERO1-like protein beta, ERO1LB.7994.41.3)	0.52	[0.38-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs1801689-C	0.03	1E-49	(ADP-ribose pyrophosphatase, mitochondrial, NUDT9.9482.110.3)	1.03	[0.89-1.17] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs1801689-C	0.03	1E-20	(DnaJ homolog subfamily B member 9, DNAJB9.11214.40.3)	0.66	[0.52-0.8] unit increase	Affymetrix [10572788] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-A	NR	3E-18		0.108	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-A	0.967	3E-15	(EA)	0.102	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-A	NR	6E-30		0.144	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs1801689-A	0.967	2E-26	(EA)	0.142	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q24.2	APOH	rs1801689-A	0.9693	8E-6		0.0813	[0.046-0.117] unit decrease	NR [8041861] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q24.2	APOH, PSMD7P1, PRKCA	rs1801689-C	0.03212851	7E-10	(EA, Dickkopf-related protein 4)	0.7217	[0.49-0.95] unit increase	Affymetrix [509946]	N
1074	chr17	64210579	64210580	rs1801689	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q24.2	APOH, PSMD7P1, PRKCA	rs1801689-C	0.03212851	3E-19	(EA, NAD-dependent protein deacetylase sirtuin-2)	1.132	[0.89-1.37] unit increase	Affymetrix [509946]	N
1074	chr17	64210579	64210580	rs1801689	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	17q24.2	APOH	rs1801689-C		4E-19	(PLT)	0.106	[0.082-0.13] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
1074	chr17	64210579	64210580	rs1801689	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q24.2	APOH, PRXCA	rs1801689-C	0.04	1E-11		0.103	[NR] unit increase	NR [NR] (imputed)	N
1074	chr17	64211557	64211558	rs8178858	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Apo H plasma levels	400 French ancestry individuals	NA	17q24.2		rs8178858-G	NR	4E-7		0.118	[0.067-0.169] ug/mL decrease	Illumina [5201092] (imputed)	N
1074	chr17	64213929	64213930	rs8077564	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DHX8	5,365 Icelandic ancestry individuals	NA	17q24.2		rs8077564-G	0.2954	2E-61		0.334827	[0.3-0.37] unit decrease	Illumina [7506463] (imputed)	N
1074	chr17	64214269	64214270	rs8178854	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	APOH	rs8178854-G	0.301	2E-232	(ATP-dependent RNA helicase DHX8, DHX8.11601.26.3)	0.77	[0.73-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
1074	chr17	64215622	64215623	rs8178848	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	17q24.2	CCDC46, APOH	rs8178848-?	NR	1E-11	(Anti-?2GPI IgG, 99th percentile)	1.7885	[1.27-2.31]	Affymetrix [at least 662405]	N
1074	chr17	64216814	64216815	rs8178847	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q24.2	APOH, CEP112, PSMD7P1	rs8178847-T	0.06576305	8E-19	(EA, NAD-dependent protein deacetylase sirtuin-2)	0.7904	[0.62-0.96] unit increase	Affymetrix [509946]	N
1074	chr17	64216814	64216815	rs8178847	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	17q24.2	APOH, CEP112, PSMD7P1	rs8178847-T	0.06576305	4E-17	(EA, Dickkopf-related protein 4)	0.6899	[0.53-0.85] unit increase	Affymetrix [509946]	N
1074	chr17	64218606	64218607	rs8178843	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTPRR	5,363 Icelandic ancestry individuals	NA	17q24.2		rs8178843-A	0.2295	8E-52		0.325599	[0.28-0.37] unit increase	Illumina [7506463] (imputed)	N
1074	chr17	64219014	64219015	rs3785617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q24.2		rs3785617-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	17q24.2		rs8178824-C	0.969965	7E-14		0.0910528	[0.067-0.115] unit decrease	NR [11722792] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q24.2		rs8178824-T	NR	3E-39		0.0894	[0.076-0.103] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q24.2		rs8178824-T	NR	3E-16		0.0582	[0.044-0.072] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q24.2		rs8178824-C	0.97	5E-25				Affymetrix [10369434] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	17q24.2		rs8178824-T	0.03	2E-17		0.2642	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q24.2	APOH	rs8178824-T	0.03006	2E-68		0.1155878	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q24.2	APOH	rs8178824-T	0.030065	9E-48		0.095867686	[0.083-0.109] unit increase	Affymetrix [93095623] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q24.2	NR	rs8178824-C	0.970217	9E-36		0.0427329	[0.036-0.05] unit increase	Affymetrix [16585854] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q24.2	NR	rs8178824-C	0.970217	2E-26		0.041749	[0.034-0.05] unit increase	Affymetrix [16585866] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17q24.2	NR	rs8178824-T	0.029783000000000004	6E-15		0.04606	[0.035-0.058] unit increase	Affymetrix [16583148] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q24.2	NR	rs8178824-T	0.029754999999999976	5E-15		0.0577784	[0.043-0.072] unit increase	Affymetrix [16585745] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q24.2	NR	rs8178824-C	0.97024	6E-24		0.0604277	[0.049-0.072] unit decrease	NR [NR]	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q24.2	APOH	rs8178824-T	NR	3E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q24.2	APOH	rs8178824-T	NR	1E-14				Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q24.2	APOH	rs8178824-T	NR	7E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q24.2	APOH	rs8178824-T	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q24.2	APOH	rs8178824-T	NR	6E-8	(EA)	3.588	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q24.2	APOH	rs8178824-T	NR	1E-9		3.789	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q24.2	APOH	rs8178824-T	NR	8E-8		4.281	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q24.2	APOH	rs8178824-T	NR	6E-6	(EA)	4.202	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1074	chr17	64224774	64224775	rs8178824	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	NR	rs8178824-T	0.03	4E-27	(ATP-dependent RNA helicase DHX8, DHX8.11601.26.3)	0.77	[0.63-0.91] unit decrease	Affymetrix [10572788] (imputed)	N
1075	chr17	64225528	64225529	rs8178822	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	17q24.2	APOH, CCDC46	rs8178822-?	NR	1E-11	(Anti-?2GPI IgG, 99th percentile)	1.7714	[1.26-2.28]	Affymetrix [at least 662405]	N
1075	chr17	64227362	64227363	rs11867410	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	17q24.2	APOH	rs11867410-C	0.02	3E-7	(MAP, during intervention)	4.21	[2.58-5.84] mmHg decrease	Affymetrix [2216774] (imputed)	N
1075	chr17	64227362	64227363	rs11867410	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	17q24.2	APOH	rs11867410-C	0.02	3E-7	(DBP, during intervention)	3.96	[2.43-5.49] mmHg decrease	Affymetrix [2216774] (imputed)	N
1075	chr17	64228994	64228995	rs149394327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q24.2		rs149394327-C	NR	5E-12		0.0472	[0.034-0.061] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1075	chr17	64228994	64228995	rs149394327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q24.2	NR	rs149394327-C	0.030544	4E-79		0.1013	[0.091-0.112] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1075	chr17	64228994	64228995	rs149394327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q24.2		rs149394327-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1075	chr17	64236317	64236318	rs10048158	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	17q24.2	APOH	rs10048158-C	0.5	1E-6		0.41	unit decrease	Illumina [283437]	N
1075	chr17	64244777	64244778	rs78085377	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	17q24.2		rs78085377-?	NR	2E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1075	chr17	64246377	64246378	rs7209459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q24.2		rs7209459-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1075	chr17	64250604	64250605	rs13341435	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	17q24.2		rs13341435-?	NR	6E-7		0.08	[0.049-0.111] unit increase	Affymetrix, Illumina [10661418] (imputed)	N
1075	chr17	64252392	64252393	rs112260610	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	17q24.2	APOH	rs112260610-C	0.8597	3E-9		0.2588	[0.17-0.34] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1075	chr17	64269260	64269261	rs117790450	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	17q24.2		rs117790450-?	NR	2E-7		5.18	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1075	chr17	64269260	64269261	rs117790450	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	17q24.2		rs117790450-?	NR	2E-7		5.17	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1075	chr17	64278884	64278885	rs79806428	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	17q24.2	PRKCA	rs79806428-C		4E-8		17.0	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
1075	chr17	64278884	64278885	rs79806428	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	17q24.2		rs79806428-T	0.07	2E-8		0.21	[0.13-0.29] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1075	chr17	64280152	64280153	rs56152251	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	17q24.2	PRKCA	rs56152251-A	0.44	7E-14		1.6	[1.19-2.01] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1075	chr17	64283999	64284000	rs4423457	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	17q24.2	PRKCA	rs4423457-?	0.4196	3E-8		0.98	[0.97-0.99]	Affymetrix, Illumina [8494288] (imputed)	N
1075	chr17	64293910	64293911	rs115012414	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	17q24.2	PRKCA	rs115012414-C	0.04	8E-6	(Percentage fat mass)	0.03	[0.01-0.05] unit decrease	Illumina [125878]	N
1075	chr17	64300280	64300281	rs12945884	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	17q24.2	PRKCA	rs12945884-T	0.53	3E-8		1.2	[1.12 - 1.28]	Affymetrix, Illumina [6990521] (imputed)	N
1075	chr17	64303792	64303793	rs9892651	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	17q24.2	PRKCA	rs9892651-T	0.5861	3E-10		1.251947	1.16-1.36	Illumina [6530233] (imputed)	N
1075	chr17	64303792	64303793	rs9892651	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	17q24.2	PRKCA	rs9892651-T	0.5861	2E-16		1.2461112	1.18-1.31	Illumina [6530233] (imputed)	N
1075	chr17	64303792	64303793	rs9892651	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	17q24.2	PRKCA	rs9892651-C	0.4165	5E-9		1.0811907	1.05-1.11	Affymetrix, Illumina [up to 7736182] (imputed)	N
1075	chr17	64303792	64303793	rs9892651	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q24.2	PRKCA	rs9892651-C	0.429	3E-14		0.74	[0.54-0.94] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	17q24.2		rs9909004-C	0.42	7E-7		0.029	[0.017-0.041] unit decrease	Affymetrix [NR]	N
1075	chr17	64306132	64306133	rs9909004	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	17q24.2		rs9909004-C	0.42	9E-7		0.029	[0.017-0.041] unit decrease	Affymetrix [NR]	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	7E-28	(-16 ms)	0.0609009	[0.05-0.072] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	7E-11	(-6 ms)	0.0363713	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	5E-9	(4 ms)	0.0323242	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	5E-27	(-18 ms)	0.0601467	[0.049-0.071] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	5E-24	(-20 ms)	0.0566771	[0.046-0.068] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-26	(-14 ms)	0.0590703	[0.048-0.07] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-22	(-12 ms)	0.055014	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-18	(-22 ms)	0.0495436	[0.038-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-18	(-10 ms)	0.0489859	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-14	(-8 ms)	0.0425001	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	2E-10	(6 ms)	0.0354152	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.418743	1E-8	(-4 ms)	0.0317576	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17q24.2	PRKCA	rs9909004-C	0.42	3E-9		0.38	[0.26-0.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1075	chr17	64306132	64306133	rs9909004	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q24.2	PRKCA	rs9909004-C	0.4172	3E-7		0.3462	[0.21-0.48] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1075	chr17	64307013	64307014	rs7210446	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	17q24.2	PRKCA	rs7210446-G	0.41789	6E-8		0.232927	[0.15-0.32] unit decrease	Affymetrix [8590397] (imputed)	N
1075	chr17	64307013	64307014	rs7210446	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	17q24.2	PRKCA	rs7210446-G	0.419	7E-10		0.22	[0.15-0.29] unit decrease	Affymetrix [8590397] (imputed)	N
1075	chr17	64308309	64308310	rs112520848	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	17q24.2	PRKCA	rs112520848-C		7E-9		0.0052	[0.0034-0.007] unit increase	Affymetrix [13304133] (imputed)	N
1075	chr17	64312462	64312463	rs12940610	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during recovery from exercise	51,503 European ancestry individuals	NA	17q24.2		rs12940610-A	0.422	7E-12		0.039	[0.027-0.051] bpm increase	Affymetrix [9800000] (imputed)	N
1075	chr17	64315082	64315082	rs766843564	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.2	PRKCA	rs766843564-A	0.3891	8E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1075	chr17	64315084	64315084	rs569258685	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	17q24.2		rs569258685-G	0.421425	1E-8	(female)	0.0440345	[0.029-0.059] bpm decrease	Affymetrix [9800000] (imputed)	N
1075	chr17	64315084	64315084	rs569258685	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	17q24.2		rs569258685-G	0.421	9E-12		0.036	[0.026-0.046] bpm decrease	Affymetrix [9800000] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	17q24.2	NR	rs9912468-?	NR	7E-7		0.4569705	[0.28-0.64] unit decrease	Illumina [26566045] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	17q24.2	PRKCA	rs9912468-G	0.407849	1E-37		0.428866	[0.36-0.49] ms increase	Illumina [162199]	N
1075	chr17	64318356	64318357	rs9912468	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	17q24.2	PRKCA	rs9912468-G	0.42067671371597	8E-19		0.4210582	[0.33-0.51] ms increase	Illumina [213295]	N
1075	chr17	64318356	64318357	rs9912468	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	17q24.2	NR	rs9912468-C	0.419069029357312	8E-7				NR [9276018] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q24.2	PRKCA	rs9912468-?	NR	2E-11	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Sokolow-Lyon)	up to 54,303 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q24.2	PRKCA	rs9912468-?	NR	3E-12	(EA)	32.05	[23.03-41.07] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q24.2	PRKCA	rs9912468-?	NR	5E-11	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	17q24.2	PRKCA	rs9912468-C	0.57	1E-8	(European)	0.39	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1075	chr17	64318356	64318357	rs9912468	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	17q24.2	PRKCA	rs9912468-C		1E-10		0.38	[0.26-0.5] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
1075	chr17	64321566	64321567	rs8071250	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q24.2	PRKCA	rs8071250-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1075	chr17	64331155	64331156	rs72843895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.2		rs72843895-?	NR	4E-27				NR [~ 8900000] (imputed)	N
1075	chr17	64343404	64343405	rs72843902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q24.2	Intergenic	rs72843902-T	0.8405	7E-9	(MTAG)	0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1075	chr17	64343404	64343405	rs72843902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q24.2	Intergenic	rs72843902-T	0.8405	1E-8	(MTAG)	0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	2E-10		0.0482	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	1E-9		0.0459	[0.031-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	1E-12		0.0566	[0.041-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	5E-16		0.0611	[0.046-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	1E-17		0.0646	[0.05-0.079] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	6E-10		0.0468	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	2E-10		0.0479	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	1E-15		0.0604	[0.046-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64361923	64361924	rs117524772	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	17q24.2	NR	rs117524772-A	NR	3E-16		0.0617	[0.047-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1076	chr17	64447164	64447165	rs7207499	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	17q24.2	PRKCA	rs7207499-?	NR	5E-6	(Whole cohort; AA)			Illumina [up to 871502]	N
1076	chr17	64469880	64469881	rs58296998	32019797	Wojcik GL	2020-02-04	mBio	Genome-Wide Association Study of Cryptosporidiosis in Infants Implicates PRKCA.	Cryptosporidiosis	183 Bangladeshi ancestry cases, 873 Bangladeshi ancestry controls	NA	17q24.2	PRKCA	rs58296998-T	NR	4E-8		2.4	[NR]	Illumina [6504706] (imputed)	N
1076	chr17	64473271	64473272	rs3888658	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Systolic blood pressure	4,659 Korean ancestry females	5,273 Korean ancestry females	17q24.2	PRKCA	rs3888658-A	0.3057	7E-6		1.2996	[0.73-1.87] unit decrease	Affymetrix [NR] (imputed)	N
1076	chr17	64482334	64482335	rs7224957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q24.2		rs7224957-C	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1077	chr17	64489703	64489704	rs2109648	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q24.2	PRKCA	rs2109648-A	0.36035	5E-9		5.84	z score increase	NR [10847151] (imputed)	N
1077	chr17	64500942	64500943	rs2244497	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q24.2	PRKCA	rs2244497-T	0.63868	7E-7		4.964	z score increase	Illumina [18485882] (imputed)	N
1077	chr17	64517312	64517313	rs11651708	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q24.2	PRKCA	rs11651708-A	0.33	3E-6	(AA)	0.16	[0.1-0.22] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1077	chr17	64520405	64520406	rs1980119	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q24.2	NR	rs1980119-A	NR	2E-8		5.631	z score decrease	Affymetrix [10847151] (imputed)	N
1077	chr17	64526987	64526988	rs59443763	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Total glycated albumin levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	17q24.2	PRKCA	rs59443763-C	0.06	6E-7	(AA)	0.06	[0.04-0.08] unit increase	Affymetrix [NR] (imputed)	N
1077	chr17	64526987	64526988	rs59443763	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Percent glycated albumin	7,647 European ancestry individuals, 2,104 Black individuals	1,304 European ancestry individuals, 608 Black individuals	17q24.2	PRKCA	rs59443763-C	0.06	4E-9	(AA, initial)	0.05	[0.032-0.068] unit increase	Affymetrix [NR] (imputed)	N
1077	chr17	64530886	64530887	rs9303509	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q24.2	NR	rs9303509-A	0.3994	4E-9	(East Asian)	0.3729	[0.25-0.5] unit increase	Illumina [6200000] (imputed)	N
1077	chr17	64530886	64530887	rs9303509	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q24.2	NR	rs9303509-A	0.3994	7E-9	(East Asian)	0.2581	[0.17-0.35] unit increase	Illumina [6200000] (imputed)	N
1077	chr17	64530886	64530887	rs9303509	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q24.2	NR	rs9303509-A	0.4169	9E-7	(East Asian)	0.1966	[0.12-0.28] unit increase	Illumina [6200000] (imputed)	N
1077	chr17	64533056	64533057	rs9908167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17q24.2		rs9908167-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1077	chr17	64534817	64534818	rs9895770	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q24.2	PRKCA	rs9895770-T	0.236	7E-6		1.06014	[1.03-1.09]	NR [9372253] (imputed)	N
1077	chr17	64538330	64538331	rs4791051	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	17q24.2	PRKCA	rs4791051-A	0.52	2E-6	(Right HG area)	4.04	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1077	chr17	64579444	64579445	rs887797	28051079	Warner SC	2017-01-04	Eur J Hum Genet	Genome-wide association scan of neuropathic pain symptoms post total joint replacement highlights a variant in the protein-kinase C gene.	Possible neuropathic pain in post total joint replacement surgery for osteoarthritis	109 cases, 504 controls.	NA	17q24.2	PRKCA	rs887797-A	0.335	4E-6		2.0	[1.48-2.70]	Illumina [548381]	N
1078	chr17	64711562	64711563	rs74902201	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	17q24.2	PRKCA	rs74902201-A	0.06	6E-8	(mYscore, continuous)	0.17	unit increase	Affymetrix, Illumina [~ 31000000] (imputed)	N
1078	chr17	64711562	64711563	rs74902201	27106561	Cornelis MC	2016-04-23	Obesity (Silver Spring)	A genome-wide investigation of food addiction.	Food addiction	up to 9,314 European ancestry individuals	NA	17q24.2	PRKCA	rs74902201-A	0.06	6E-7	(mYscore, binary)	1.67		Affymetrix, Illumina [~ 31000000] (imputed)	N
1078	chr17	64715107	64715108	rs9900205	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	17q24.2	PRKCA	rs9900205-?		1E-7				Illumina [479403]	N
1078	chr17	64730628	64730629	rs9899787	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q24.2	PRKCA	rs9899787-?		7E-6				Illumina [4322238] (imputed)	N
1079	chr17	64774776	64774777	rs55792688	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	17q24.2	PRCKA	rs55792688-?		9E-6	(corrected for APOE4 status)	0.12	[NR] unit decrease	Illumina [5137218] (imputed)	N
1079	chr17	64779429	64779430	rs3889237	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	17q24.2	PRKCA	rs3889237-C	0.14	3E-8		0.056	[0.029-0.083] unit decrease	Affymetrix [855034]	N
1079	chr17	64787599	64787600	rs4791039	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	17q24.2	PRKCA	rs4791039-G	NR	2E-6		4.764	NR z score decrease	Illumina [7839440] (imputed)	N
1079	chr17	64836302	64836303	rs114676416	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Viral capsid antigen IgG seropositivity	1,344 Ugandan ancestry cases, 218 Ugandan ancestry controls	NA	17q24.2	CACNG5	rs114676416-?	0.919	2E-9		1.16	[1.10-1.22]	Illumina [~ 17000000] (imputed)	N
1079	chr17	64842924	64842925	rs8065772	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	17q24.2	CACNG5	rs8065772-T	0.126	2E-6				Affymetrix [761050]	N
1079	chr17	64858038	64858039	rs77255586	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	17q24.2		rs77255586-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1080	chr17	64917032	64917033	rs17645023	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	17q24.2	CACNG5	rs17645023-?	NR	6E-7				Affymetrix [302482]	N
1080	chr17	64925700	64925701	rs1032971	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	17q24.2	CACNG4	rs1032971-A	0.03871	2E-6	(African)			Illumina [4404269] (imputed)	N
1080	chr17	64933782	64933783	rs9905054	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	17q24.2	CACNG4	rs9905054-G	NR	4E-6		21.58	[12.58-30.58] unit decrease	Illumina [4471676] (imputed)	N
1080	chr17	64983091	64983092	rs8070529	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	17q24.2	NR	rs8070529-?		1E-6				Illumina [892589]	N
1080	chr17	64995454	64995455	rs78395560	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	17q24.2	CACNG4	rs78395560-?	NR	7E-8		4.113	NR	Illumina [802276]	N
1081	chr17	65034161	65034162	rs55908084	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	17q24.2	NR	rs55908084-?	NR	3E-6		0.06	NR unit increase	Affymetrix [388620]	N
1081	chr17	65035214	65035215	rs4790993	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	17q24.2	CACNG4, CACNG1	rs4790993-T	0.7	7E-9		0.0055	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1081	chr17	65035214	65035215	rs4790993	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	17q24.2	CACNG4, CACNG1	rs4790993-T	0.7	1E-7		0.0053	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1081	chr17	65035234	65035235	rs2885928	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q24.2	NR	rs2885928-?	NR	8E-32				Affymetrix [NR]	N
1081	chr17	65039442	65039443	rs144023814	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	17q24.2	Intergenic	rs144023814-?	NR	4E-7		7.35	[3.4-15.92]	Illumina [8600000] (imputed)	N
1081	chr17	65040422	65040423	rs17699284	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	17q24.2		rs17699284-?	NR	2E-9				Illumina [1128286]	N
1081	chr17	65052303	65052304	rs1799938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q24.2	NR	rs1799938-A	NR	3E-10		0.0235	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr17	65070303	65070304	rs9902312	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	17q24.2	NR	rs9902312-?		5E-11		0.0153237	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1081	chr17	65087307	65087308	rs763333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q24.2	HELZ	rs763333-C	0.479225	5E-9		0.012939382	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr17	65087307	65087308	rs763333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q24.2	NR	rs763333-C	0.480554	6E-11		0.012373	[0.0087-0.0161] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1081	chr17	65101804	65101805	rs112793415	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.2	NR	rs112793415-C	0.01394	9E-9	(HEXB)	0.08959	NR unit increase	Illumina [1671387] (imputed)	N
1081	chr17	65101804	65101805	rs112793415	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.2	NR	rs112793415-C	0.01394	3E-8	(FGA)	0.2805	NR unit increase	Illumina [1671387] (imputed)	N
1081	chr17	65104665	65104666	rs11657929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q24.2	HELZ	rs11657929-G	0.479312	7E-11		0.014382546	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1081	chr17	65123351	65123352	rs6504487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q24.2	HELZ	rs6504487-A	0.479716	3E-9		0.01314966	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr17	65124552	65124553	rs9898605	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q24.2		rs9898605-G	0.701	2E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1081	chr17	65126640	65126641	rs9914426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q24.2	NR	rs9914426-G	0.538584	1E-14		0.00860949	[0.0064-0.0108] unit increase	Affymetrix [16582621] (imputed)	N
1081	chr17	65126640	65126641	rs9914426	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q24.2	NR	rs9914426-G	0.538584	2E-11		0.00799408	[0.0056-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
1081	chr17	65126640	65126641	rs9914426	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	17q24.2	HELZ	rs9914426-?	NR	1E-6		28.667	[17.12-40.21] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1081	chr17	65137752	65137753	rs4239072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs4239072-T	0.53634	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1082	chr17	65159065	65159066	rs75856864	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	17q24.2	HELZ	rs75856864-T	NR	2E-6	(adjusted for total body fat)	0.184	[0.11-0.26] unit decrease	Illumina [8511049] (imputed)	N
1082	chr17	65235970	65235971	rs7211695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q24.2	NR	rs7211695-A	0.520933	1E-24		0.00770303	[0.0061-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
1082	chr17	65235970	65235971	rs7211695	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q24.2	NR	rs7211695-A	0.520933	5E-17		0.00711661	[0.0053-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
1082	chr17	65244936	65244937	rs148522108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.2	NR	rs148522108-C	0.0331	4E-9	(NUCB1)	0.01888	NR unit increase	Illumina [1671387] (imputed)	N
1082	chr17	65252128	65252129	rs34310593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q24.2		rs34310593-A	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1082	chr17	65257493	65257494	rs11079685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q24.2	NR	rs11079685-A	0.521766	2E-12		0.00800479	[0.0056-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
1082	chr17	65257493	65257494	rs11079685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q24.2	NR	rs11079685-A	0.521766	1E-9		0.00768006	[0.0049-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
1083	chr17	65328998	65328999	rs9897733	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	17q24.2	intergenic	rs9897733-?	NR	9E-6		0.499	[0.21-0.79] unit increase	Illumina [at least 13000000] (imputed)	N
1083	chr17	65367093	65367094	rs8073599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.2	PSMD12	rs8073599-T	NR	2E-8		0.0170966	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1083	chr17	65367093	65367094	rs8073599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.2	PSMD12	rs8073599-T	NR	8E-9		0.0175265	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1083	chr17	65367093	65367094	rs8073599	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q24.2	NR	rs8073599-T	0.3648	3E-8		0.0102	[0.0067-0.0137] unit increase	NR [~ 27400000] (imputed)	N
1083	chr17	65368898	65368899	rs12450700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.2	PITPNC1	rs12450700-G	NR	4E-9		0.0169262	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1083	chr17	65368898	65368899	rs12450700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q24.2		rs12450700-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1083	chr17	65373978	65373979	rs8866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.2	PITPNC1	rs8866-G	NR	6E-9		0.016773	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1083	chr17	65373978	65373979	rs8866	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q24.2	PITPNC1	rs8866-C	0.622	4E-10		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1083	chr17	65384458	65384459	rs4791291	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	17q24.2	PITPNC1	rs4791291-T	0.924	1E-8	(YKL-40)	16959.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1083	chr17	65386213	65386214	rs7224314	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	17q24.2	PITPNC1, LOC729822, NOL11	rs7224314-C	0.223	6E-7		2.37	[1.68-3.36]	Illumina [1556551]	N
1083	chr17	65393343	65393344	rs7217460	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q24.2	PITPNC1	rs7217460-G	0.770482	2E-8		0.00936753	[0.0061-0.0127] unit increase	Affymetrix [12370749]	N
1084	chr17	65410933	65410934	rs7224000	24503447	Nelson D	2014-02-06	Antivir Ther	Genome-wide association study to characterize serum bilirubin elevations in patients with HCV treated with GS-9256, an HCV NS3 serine protease inhibitor.	Response to protease inhibitor treatment in hepatitis c (peak serum total bilirubin levels)	176 European ancestry individuals	NA	17q24.2	PITPNC1	rs7224000-?	NR	3E-6		0.12	[NR] unit increase	Illumina [4466593]	N
1084	chr17	65418161	65418162	rs76766498	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		17q24.2	PITPNC1	rs76766498-?	NR	2E-7		5.25	[2.94-9.48]	Illumina [11526719] (imputed)	N
1084	chr17	65446560	65446561	rs2949947	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	17q24.2	NR	rs2949947-A	0.77975	8E-6		1.1273957	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
1084	chr17	65475331	65475332	rs2364972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	17q24.2		rs2364972-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1084	chr17	65478760	65478761	rs117661063	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	17q24.2		rs117661063-C	NR	3E-6		4.9601	[2.92-7] unit increase	Illumina [NR] (imputed)	N
1084	chr17	65482063	65482064	rs2916142	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q24.2		rs2916142-T	0.4565	8E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1084	chr17	65482108	65482109	rs2916148	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	17q24.2	PITPNC1	rs2916148-A	0.4522	3E-14		1.0292		Affymetrix [11880941] (imputed)	N
1084	chr17	65482108	65482109	rs2916148	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q24.2	PITPNC1	rs2916148-A	0.4522	3E-14		1.0282929		Affymetrix [11880941] (imputed)	N
1084	chr17	65488020	65488021	rs2017854	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	17q24.2	PITPNC1	rs2017854-?	NR	3E-6	(FEV1/FVC)			Affymetrix [246010]	N
1084	chr17	65504829	65504830	rs2916143	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Plasma selenium concentration	1,211 European ancestry individuals	NA	17q24.2	PITPNC1	rs2916143-?	0.137	3E-7		0.023	[0.013-0.033] unit increase	Illumina [7663546] (imputed)	N
1084	chr17	65509101	65509102	rs2916139	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	17q24.2	NR	rs2916139-G	0.413	7E-6	(IFNalpha_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
1084	chr17	65513787	65513788	rs36084697	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q24.2	NR	rs36084697-?	NR	5E-9				Illumina [7760689] (imputed)	N
1085	chr17	65578872	65578873	rs2706702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	17q24.2		rs2706702-T	0.492639	7E-13		0.0241566	[0.018-0.031] unit decrease	Illumina [13478792] (imputed)	N
1085	chr17	65578872	65578873	rs2706702	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	17q24.2	PITPNC1	rs2706702-?	NR	9E-13		0.02534	[0.018-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1085	chr17	65579686	65579687	rs35199232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q24.2		rs35199232-C	NR	2E-48		0.029	[0.025-0.033] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1085	chr17	65579727	65579728	rs28680305	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q24.2	PITPNC1	rs28680305-A	0.4151	9E-22		0.0075	[0.0059-0.0091] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1085	chr17	65582797	65582798	rs75192386	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs75192386-G	NR	1E-21		0.0297	[0.024-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1085	chr17	65641650	65641651	rs2706710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q24.2		rs2706710-T	NR	2E-8		0.0495	[0.032-0.067] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1085	chr17	65641650	65641651	rs2706710	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	17q24.2	PITPNC1	rs2706710-T	0.081	2E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1085	chr17	65648426	65648427	rs11657492	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q24.2	BPTF	rs11657492-G	0.1002	6E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1086	chr17	65714209	65714210	rs758468472	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis (maxillary second premolars)	600 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	17q24.2	NOL11	rs758468472-G	0.0004	3E-8		27.4	[8.47-88.7]	Illumina [NR] (imputed)	N
1087	chr17	65820152	65820153	rs558308082	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q24.2	BPTF	rs558308082-C	8.0E-4	7E-6		2.04	[1.49-2.77]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1087	chr17	65821606	65821607	rs557187070	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q24.2	NR	rs557187070-?	NR	8E-6		0.890669	[0.5-1.28] unit increase	NR [13958389] (imputed)	N
1087	chr17	65825247	65825248	rs12603589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12603589-T	0.811737	2E-8		0.028963	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825247	65825248	rs12603589	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q24.2	NR	rs12603589-C	0.3128	1E-19		0.0421	[0.033-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1087	chr17	65825353	65825354	rs12601921	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601921-C	0.811727	5E-8		0.0282501	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811093	1E-10		0.0319276	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	4E-9		0.029561	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-8		0.0289661	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-9		0.0295991	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	5E-10		0.0320858	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-8		0.0287088	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	4E-10		0.0318657	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-9		0.031093	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	2E-10		0.0324309	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	7E-9		0.0297635	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	9E-10		0.0316432	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	5E-9		0.0302873	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-8		0.0291549	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	2E-9		0.0312013	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-9		0.0302554	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-8		0.029054	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	1E-8		0.0290221	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	2E-8		0.0290968	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811111	2E-8		0.0277425	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811111	5E-8		0.027739	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811111	3E-8		0.0280278	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-8		0.0283545	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	4E-9		0.0300802	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811111	2E-8		0.0295034	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-8		0.0283672	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	9E-9		0.0294066	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	7E-9		0.0294025	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	7E-9		0.0296129	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-8		0.0283943	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	4E-8		0.0275736	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	4E-8		0.0276622	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1087	chr17	65825373	65825374	rs12601919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs12601919-A	0.811096	3E-8		0.0275423	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1087	chr17	65828370	65828371	rs2080090	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q24.2	NR	rs2080090-T	0.8116	8E-19		0.0525	[0.041-0.064] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1087	chr17	65828370	65828371	rs2080090	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q24.2	NR	rs2080090-?	NR	6E-8	(male)	0.18015	[0.11-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1087	chr17	65828370	65828371	rs2080090	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q24.2	NR	rs2080090-?	NR	5E-9		0.15811	[0.1-0.21] unit increase	Affymetrix [7794483] (imputed)	N
1087	chr17	65829357	65829358	rs12449312	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs12449312-A	0.804724	3E-8		0.0283913	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65832015	65832016	rs7218014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q24.2		rs7218014-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1087	chr17	65833001	65833002	rs1976053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q24.2		rs1976053-G	NR	7E-20		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1087	chr17	65836000	65836001	rs80135947	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	17q24.2	BPTF	rs80135947-C	0.2	5E-12		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
1087	chr17	65836220	65836223	rs113437066	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q24.2	NR	rs113437066-?		2E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1087	chr17	65839209	65839210	rs8073510	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	17q24.2	BPTF	rs8073510-A	0.8045	1E-16		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
1087	chr17	65840808	65840809	rs11871285	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17q24.2	BPTF	rs11871285-T	0.193205	8E-9		0.0473409	[0.031-0.063] unit increase	Affymetrix [9463307] (imputed)	N
1087	chr17	65840809	65840810	rs11868959	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs11868959-T	0.807738	2E-10		0.0325712	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65840809	65840810	rs11868959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q24.2		rs11868959-C	NR	3E-20		0.0226	[0.018-0.027] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1087	chr17	65847059	65847060	rs62084234	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q24.2	NR	rs62084234-G	0.1952	4E-16		0.025467413	[0.019-0.032] unit increase	Affymetrix [10549349] (imputed)	N
1087	chr17	65852906	65852907	rs4790908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs4790908-T	0.805713	4E-9		0.0299811	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65852906	65852907	rs4790908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs4790908-T	0.805713	4E-9		0.0302638	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65852906	65852907	rs4790908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs4790908-T	0.805713	2E-9		0.0307549	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	17q24.2		rs55931203-T	0.19	3E-20		0.024	mmol/L increase	NR [NR] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q24.2		rs55931203-T	0.19	3E-15				NR [NR] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	17q24.2		rs55931203-T	0.19	2E-6		0.011	mmol/L decrease	NR [NR] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q24.2		rs55931203-T	0.19	6E-28		0.021	% increase	NR [NR] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	17q24.2		rs55931203-T	0.19	1E-19		0.023	U/L increase	NR [NR] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q24.2	BPTF	rs55931203-T	0.19	4E-21		9.42	z-score increase	Affymetrix [4312306] (imputed)	N
1087	chr17	65854601	65854602	rs55931203	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q24.2	BPTF	rs55931203-C	0.812733	2E-12		0.0125644	[0.0091-0.016] unit decrease	Affymetrix [12370749]	N
1087	chr17	65854806	65854807	rs62084237	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q24.2		rs62084237-G	0.818	6E-12				Affymetrix [10369434] (imputed)	N
1087	chr17	65854806	65854807	rs62084237	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	17q24.2	BPTF	rs62084237-G	0.817481	5E-39		0.00863138	[0.0073-0.01] unit decrease	Affymetrix [13995440] (imputed)	N
1087	chr17	65854806	65854807	rs62084237	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q24.2	BPTF	rs62084237-G	0.8175	3E-20		0.0240892	[0.019-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1087	chr17	65870072	65870073	rs12602912	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q24.2	NR	rs12602912-C	NR	5E-8		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1087	chr17	65870072	65870073	rs12602912	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q24.2	BPTF	rs12602912-T	0.22	6E-12		0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
1087	chr17	65870072	65870073	rs12602912	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	17q24.2	BPTF	rs12602912-G	NR	2E-8	(fixed)	1.0845		Illumina [87827]	N
1087	chr17	65875586	65875587	rs11867618	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	17q24.2	BPTF	rs11867618-?	NR	7E-9		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1087	chr17	65875586	65875587	rs11867618	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q24.2	BPTF	rs11867618-A	0.1303	1E-8		0.021921	[0.014-0.029] unit increase	Affymetrix [~ 11515000] (imputed)	N
1087	chr17	65880537	65880538	rs60432162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q24.2	BPTF	rs60432162-C	0.1978	2E-17		0.0388262	[0.03-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr17	65880537	65880538	rs60432162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q24.2	BPTF	rs60432162-C	0.1978	6E-19		0.04065155	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1087	chr17	65885910	65885911	rs11079710	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q24.2		rs11079710-C	0.739	6E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1087	chr17	65892063	65892064	rs11653507	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	17q24.2		rs11653507-?	NR	3E-9		0.0064673	[0.0043-0.0086] unit increase	NR [NR]	N
1087	chr17	65892063	65892064	rs11653507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.2	BPTF	rs11653507-T	NR	4E-8		0.0186575	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1087	chr17	65892279	65892280	rs59640213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	17q24.2		rs59640213-A	0.69428	2E-10		0.0318814	[0.022-0.042] unit increase	Illumina [13470073] (imputed)	N
1087	chr17	65892342	65892343	rs60856912	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q24.2	BPTF	rs60856912-G	0.837113	3E-9		0.0168309	[0.011-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1087	chr17	65892342	65892343	rs60856912	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q24.2	BPTF	rs60856912-?	NR	6E-15		0.0279	[0.022-0.034] unit increase	Affymetrix [5701386] (imputed)	N
1087	chr17	65892342	65892343	rs60856912	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q24.2	NR	rs60856912-T	0.169	4E-9		0.00872394	[0.0058-0.0116] unit increase	NR [9732723] (imputed)	N
1087	chr17	65892342	65892343	rs60856912	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	17q24.2	BPTF	rs60856912-T	0.16198199999999996	4E-6		1.12	[1.06-1.17]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1087	chr17	65892342	65892343	rs60856912	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	17q24.2	BPTF	rs60856912-T	0.16	4E-7		1.11	[1.06-1.15]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1087	chr17	65892506	65892507	rs61676547	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	17q24.2	BPTF	rs61676547-C	0.1924	3E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1087	chr17	65892506	65892507	rs61676547	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	BPTF	rs61676547-C	0.3144	3E-11		0.0208	[0.015-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1087	chr17	65898808	65898809	rs7216064	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	17q24.2	NR	rs7216064-A	0.62	3E-8	(East Asian)	1.13	[1.08-1.18]	Illumina [~ 11000000] (imputed)	N
1087	chr17	65898808	65898809	rs7216064	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	17q24.2	BPTF	rs7216064-A	0.706	2E-12		1.27	[1.19-1.35]	Illumina [NR] (imputed)	N
1087	chr17	65898808	65898809	rs7216064	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	17q24.2	BPTF	rs7216064-A	0.63	7E-6		1.16	[1.09-1.25]	Illumina [596032]	N
1087	chr17	65898808	65898809	rs7216064	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	17q24.2	BPTF	rs7216064-A	0.707	7E-11		1.2	[1.13-1.26]	Illumina [538166]	N
1087	chr17	65903325	65903326	rs6504551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	17q24.2		rs6504551-G	0.73345	8E-10		0.022219	[0.015-0.029] unit increase	Illumina [13479178] (imputed)	N
1087	chr17	65903325	65903326	rs6504551	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	17q24.2	BPTF	rs6504551-T	0.736337	1E-10		0.0149076	[0.01-0.02] unit increase	NR [16516521] (imputed)	N
1087	chr17	65915289	65915298	rs200595745	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	17q24.2	NR	rs200595745-A	NR	2E-9		1.09	[1.06-1.12]	NR [NR] (imputed)	N
1087	chr17	65915289	65915298	rs200595745	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	17q24.2	NR	rs200595745-A	NR	4E-9		1.11	[1.07-1.14]	NR [NR] (imputed)	N
1087	chr17	65915289	65915298	rs200595745	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	17q24.2	NR	rs200595745-A	0.62	3E-8	(East Asian)	1.12	[1.08-1.17]	Illumina [~ 11000000] (imputed)	N
1087	chr17	65915289	65915298	rs200595745	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	17q24.2	BPTF	rs200595745-A	0.43	2E-9		1.09	[1.06-1.12]	Illumina [~ 11000000] (imputed)	N
1087	chr17	65921833	65921834	rs4790981	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q24.2	BPTF	rs4790981-G	0.713	5E-10	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
1088	chr17	65944514	65944515	rs11870068	27151647	Chen G	2016-05-05	Addict Biol	An association study revealed substantial effects of dominance, epistasis and substance dependence co-morbidity on alcohol dependence symptom count.	Alcohol dependence symptom count	2,605 European ancestry individuals, 1,233 African American individuals	NA	17q24.2	BPTF	rs11870068-?		5E-7	(additive)	0.227	[0.14-0.32] unit decrease	Illumina [974863]	N
1088	chr17	65947639	65947640	rs12449442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.2	NR	rs12449442-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.2		rs12449442-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q24.2	BPTF	rs12449442-?	NR	7E-12		0.577	[0.41-0.75] unit decrease	Affymetrix [11100000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q24.2	NA	rs12449442-A	0.2186	3E-16		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q24.2	NR	rs12449442-A	0.2186	3E-16		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q24.2	NA	rs12449442-A	0.2198	2E-13		0.0149	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1088	chr17	65947639	65947640	rs12449442	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q24.2	NA	rs12449442-A	0.2198	2E-13		0.0149	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1088	chr17	65951132	65951133	rs4790973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q24.2		rs4790973-T	NR	2E-29		0.0228	[0.019-0.027] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1088	chr17	65957567	65957568	rs9899520	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q24.2	BPTF	rs9899520-?		1E-8		0.0267	[0.017-0.036] unit decrease	Illumina [31500000] (imputed)	N
1088	chr17	65958250	65958258	rs148803332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	17q24.2	BPTF	rs148803332-C	0.8038	8E-15		0.03498489	[0.026-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1088	chr17	65958250	65958258	rs148803332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	17q24.2	BPTF	rs148803332-C	0.8037	9E-18		0.03850312	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1088	chr17	65962538	65962538	rs5821446	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	17q24.2	BPTF	rs5821446-AT	0.7947	4E-17		0.03720467	[0.029-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1088	chr17	65962540	65962540	rs368252808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q24.2		rs368252808-AT	0.286551	6E-11		0.0146512	[0.01-0.019] unit decrease	Illumina [13479295] (imputed)	N
1088	chr17	65962540	65962540	rs368252808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q24.2		rs368252808-AT	NR	4E-28		0.0247	[0.02-0.029] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1088	chr17	65964170	65964173	rs77596502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q24.2		rs77596502-T	NR	1E-30		0.0224	[0.019-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1088	chr17	65975384	65975385	rs4791212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q24.2		rs4791212-?	NR	8E-38				NR [~ 8900000] (imputed)	N
1088	chr17	65977131	65977132	rs4790941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	17q24.2		rs4790941-A	0.712333	4E-16		0.0245567	[0.019-0.03] unit increase	Illumina [13479924] (imputed)	N
1088	chr17	65977131	65977132	rs4790941	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q24.2	NR	rs4790941-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1088	chr17	65977131	65977132	rs4790941	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q24.2	BPTF	rs4790941-?	NR	7E-11		0.020719258	[0.014-0.027] unit increase	Illumina [27896057] (imputed)	N
1088	chr17	65982942	65982943	rs62086046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q24.2		rs62086046-T	NR	4E-18		0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1088	chr17	65982942	65982943	rs62086046	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q24.2	PPIL4, GINM1, KATNA1, LATS1, NUP43, PCMT1, LRP11, RAET1E, RAET1G	rs62086046-?		7E-11				NR [7428630] (imputed)	N
1088	chr17	65982942	65982943	rs62086046	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q24.2	BPTF, C17orf58, KPNA2	rs62086046-?		1E-15				NR [7428630] (imputed)	N
1088	chr17	65984561	65984562	rs185512226	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q24.2	C17orf58	rs185512226-A	0.9978	3E-6		0.6001	[0.35-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1088	chr17	65984561	65984562	rs185512226	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	17q24.2	C17orf58	rs185512226-A	0.9978	3E-6		0.6001	[0.35-0.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1088	chr17	65988048	65988049	rs9891146	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	17q24.2	C17orf58	rs9891146-T	0.277	1E-7		1.04	(1.02-1.06)	Affymetrix, Illumina [247470]	N
1088	chr17	65988048	65988049	rs9891146	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	17q24.2	C17orf58	rs9891146-T	0.332	7E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1088	chr17	65988048	65988049	rs9891146	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	17q24.2	C17orf58	rs9891146-T	0.293	1E-11		0.0146	[0.01-0.019] unit increase	Illumina [246328]	N
1088	chr17	65989960	65989961	rs7502307	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q24.2		rs7502307-G	0.22	3E-76		18.48	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.2		rs7502307-G	0.22	3E-42		13.61	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	17q24.2		rs7502307-G	0.22	5E-6				NR [13131314] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q24.2		rs7502307-G	0.22	4E-41		13.43	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q24.2	NR	rs7502307-G	0.1943	1E-17				NR [9056863] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q24.2	NR	rs7502307-G	0.1943	1E-17				NR [9056863] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17q24.2		rs7502307-?	NR	8E-18				NR [9705931] (imputed)	N
1088	chr17	65989960	65989961	rs7502307	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	intergenic	rs7502307-C	0.7958	2E-12		0.0244	[0.018-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1088	chr17	65990499	65990500	rs56305452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	17q24.2	NR	rs56305452-C	0.712914	7E-12		0.036576	[0.026-0.047] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
1088	chr17	65990499	65990500	rs56305452	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q24.2	NR2F1, FAM172A, POU5F2	rs56305452-?		4E-9				NR [7428630] (imputed)	N
1088	chr17	65990570	65990571	rs56315139	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	17q24.2	NR	rs56315139-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
1088	chr17	65999647	65999648	rs6504568	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	17q24.2	C17orf58	rs6504568-T	0.779	2E-12		0.020010104	[0.014-0.026] unit decrease	Affymetrix [11515109] (imputed)	N
1088	chr17	66015108	66015109	rs7225959	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	17q24.2	NR	rs7225959-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
1088	chr17	66016005	66016006	rs62086903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q24.2		rs62086903-C	0.231314	2E-29		0.029778028	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1088	chr17	66016005	66016006	rs62086903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q24.2		rs62086903-C	0.23132	5E-31		0.030614406	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1088	chr17	66016005	66016006	rs62086903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs62086903-C	0.29455	3E-44				Affymetrix, Illumina [19872809] (imputed)	N
1088	chr17	66016005	66016006	rs62086903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q24.2	NR	rs62086903-C	0.231992	2E-37		0.030422	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1088	chr17	66035410	66035411	rs62084690	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q24.2	Intergenic	rs62084690-A	0.3068	5E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1088	chr17	66036109	66036110	rs62084693	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q24.2	BPTF, KPNA2	rs62084693-?		7E-12				Affymetrix, Illumina [NR] (imputed)	N
1088	chr17	66036109	66036110	rs62084693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.2		rs62084693-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1088	chr17	66043537	66043538	rs7405743	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17q24.2	KPNA2	rs7405743-T	0.739	5E-9		0.0079	[0.0054-0.0104] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1088	chr17	66053027	66053028	rs3890640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs3890640-T	NR	3E-12		0.0194	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1089	chr17	66066437	66066438	rs75544834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	17q24.2		rs75544834-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1089	chr17	66078216	66078217	rs78352159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.2		rs78352159-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1089	chr17	66089392	66089393	rs62084752	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	17q24.2		rs62084752-C	0.75	9E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1089	chr17	66089392	66089393	rs62084752	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	17q24.2	LOC732538	rs62084752-C	0.2171	2E-10		1.07	[1.05-1.09]	Affymetrix [at least 20323458] (imputed)	N
1089	chr17	66097738	66097739	rs62085660	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	17q24.2	BPTF, C17orf58, KPNA2, LOC100499466, LOC440461, AMZ2, ARSG, SLC16A6	rs62085660-C	0.257551	2E-6		0.00399493	[0.0024-0.0056] unit decrease	NR [NR] (imputed)	N
1089	chr17	66097738	66097739	rs62085660	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	17q24.2	BPTF, C17orf58, KPNA2, LOC100499466, LOC440461, AMZ2, ARSG, SLC16A6	rs62085660-C	0.257551	1E-9		0.014265623	[0.0097-0.0189] unit increase	NR [NR] (imputed)	N
1089	chr17	66097738	66097739	rs62085660	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	17q24.2	BPTF, C17orf58, KPNA2, LOC100499466, LOC440461, AMZ2, ARSG, SLC16A6	rs62085660-C	0.257	6E-9		0.0054	[0.0036-0.0072] unit increase	NR [NR] (imputed)	N
1089	chr17	66164917	66164918	rs57209021	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	17q24.2	intergenic	rs57209021-T	0.225582	4E-8		0.1006932	[0.065-0.137] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
1089	chr17	66174415	66174416	rs7209581	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	17q24.2	BPTF	rs7209581-?	NR	5E-8		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
1089	chr17	66174415	66174416	rs7209581	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	17q24.2	KPNA2	rs7209581-C	0.433605	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
1090	chr17	66212986	66212987	rs8067476	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.2	AMZ2	rs8067476-T	0.613591	7E-9	(90 ms)	0.0333892	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1090	chr17	66270081	66270082	rs35397826	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	17q24.2	SLC16A6	rs35397826-?	NR	1E-8		0.03115	[0.021-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1090	chr17	66270081	66270082	rs35397826	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	17q24.2	SLC16A6	rs35397826-?	NR	1E-8		0.03124	[0.021-0.042] unit increase	Illumina [6108953] (imputed)	N
1090	chr17	66286194	66286195	rs4968794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.2		rs4968794-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1091	chr17	66344702	66344703	rs9910816	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Bipolar disorder (inflammation and infection response interaction)	397 Ashkenazi Jewish bipolar disorder cases, 241  Ashkenazi Jewish controls	NA	17q24.2	intergenic	rs9910816-?		2E-6	(anti-CMV)			Affymetrix [516638]	N
1091	chr17	66346555	66346556	rs143323161	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q24.2	NR	rs143323161-?	NR	3E-6	(Japanese)	0.6027	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1091	chr17	66382208	66382209	rs11655081	24375517	Lohmann K	2013-12-26	Mov Disord	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	17q24.2	ARSG	rs11655081-?	0.02	4E-9		4.33	[2.66-7.05]	Affymetrix [557620]	N
1091	chr17	66383607	66383608	rs35722605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q24.2	NR	rs35722605-T	NR	3E-14		0.0227	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr17	66395725	66395726	rs2160725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q24.2		rs2160725-C	NR	2E-13		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1091	chr17	66397739	66397740	rs72841868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q24.2	ARSG	rs72841868-G	0.46444	3E-13		0.016402198	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr17	66401062	66401063	rs12936113	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q24.2	ARSG	rs12936113-T	0.240099	2E-8		0.0137229	[0.0089-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
1091	chr17	66402255	66402256	rs11870010	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pallidum volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q24.2	ARSG	rs11870010-?		7E-6				Illumina [4322238] (imputed)	N
1091	chr17	66424340	66424341	rs12943181	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	17q24.2	NR	rs12943181-C	0.2798	6E-8		0.0071	[0.0046-0.0096] unit decrease	NR [7666894] (imputed)	N
1091	chr17	66425994	66425995	rs3785610	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q24.2		rs3785610-T	0.228626	4E-8		0.0271311	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1091	chr17	66425996	66425997	rs3785611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs3785611-C	0.228657	3E-8		0.0273659	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1091	chr17	66427695	66427696	rs6501468	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	17q24.2	PRKAR1A	rs6501468-T	0.2299	1E-9		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1091	chr17	66428001	66428002	rs11077558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q24.2	NR	rs11077558-G	NR	2E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr17	66428001	66428002	rs11077558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q24.2	NR	rs11077558-G	NR	2E-12		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1091	chr17	66428001	66428002	rs11077558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	17q24.2	NR	rs11077558-G	NR	1E-12		0.0232	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1091	chr17	66428430	66428431	rs12940626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs12940626-T	0.3266	5E-10		0.02357303	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1091	chr17	66428750	66428751	rs3897877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs3897877-T	0.158544	1E-11		0.020741541	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr17	66433180	66433181	rs8072180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs8072180-A	0.773415	2E-14		0.0203409	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr17	66433455	66433456	rs10153240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q24.2		rs10153240-G	NR	2E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1091	chr17	66433492	66433493	rs11867297	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	17q24.2		rs11867297-?	NR	1E-10		0.0135432	[0.0094-0.0176] unit increase	NR [6912294] (imputed)	N
1091	chr17	66443608	66443609	rs78095701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q24.2		rs78095701-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1091	chr17	66443928	66443929	rs1808333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs1808333-T	0.303601	2E-26		0.025823787	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr17	66444146	66444147	rs5821653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17q24.2		rs5821653-C	NR	3E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1091	chr17	66446135	66446136	rs2909209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q24.2		rs2909209-A	NR	4E-17		0.0151	[0.012-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1091	chr17	66447072	66447073	rs2302783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs2302783-T	0.289289	1E-23				Affymetrix, Illumina [22063850] (imputed)	N
1091	chr17	66447072	66447073	rs2302783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q24.2	NR	rs2302783-T	0.285946	2E-27		0.022573	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1091	chr17	66447072	66447073	rs2302783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs2302783-C	0.68466	9E-14				Affymetrix, Illumina [21126107] (imputed)	N
1091	chr17	66447072	66447073	rs2302783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q24.2		rs2302783-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1091	chr17	66447072	66447073	rs2302783	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q24.2	WIPI1	rs2302783-C	NR	2E-10		0.0272749	[0.019-0.036] unit increase	Affymetrix [16832071] (imputed)	N
1091	chr17	66447420	66447421	rs2952295	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2952295-A	0.229506	3E-14		0.0360554	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
1091	chr17	66448489	66448490	rs1808335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs1808335-A	0.229234	9E-10		0.0279546	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1091	chr17	66448489	66448490	rs1808335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	17q24.2		rs1808335-G	NR	3E-17		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1091	chr17	66449121	66449122	rs883541	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	17q24.2	PRKAR1A	rs883541-A	0.7176	2E-10		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1091	chr17	66449843	66449844	rs28449485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs28449485-G	0.126604	3E-9		0.019750832	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr17	66449843	66449844	rs28449485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q24.2	WIPI1, RP11-120M18.2	rs28449485-G	0.126616	2E-9		0.020014985	[0.013-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr17	66451025	66451026	rs3896656	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs3896656-A	0.229627	3E-8		0.0256374	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1091	chr17	66451707	66451708	rs2952294	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q24.2	MultipleGene:WIPI1, PRKAR1A	rs2952294-A	0.23	4E-12		6.92	z-score increase	Affymetrix [4311822] (imputed)	N
1091	chr17	66453304	66453305	rs71378928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs71378928-C	0.21832	9E-12		0.032326	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1091	chr17	66453304	66453305	rs71378928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q24.2		rs71378928-G	NR	6E-20		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1091	chr17	66453304	66453305	rs71378928	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q24.2	WIPI1	rs71378928-C	0.218578	4E-29		0.00304564	[0.0025-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1092	chr17	66454016	66454017	rs2952293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q24.2	RP11-120M18.2	rs2952293-T	0.48703	6E-15		0.01736652	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1092	chr17	66454016	66454017	rs2952293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q24.2	RP11-120M18.2	rs2952293-T	0.487043	5E-16		0.018044394	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	1E-10		0.0287309	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	6E-10		0.0276495	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	3E-14		0.0353105	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	2E-11		0.0300668	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	2E-9		0.0267492	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66457657	66457658	rs2909211	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs2909211-C	0.221103	1E-10		0.0289707	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
1092	chr17	66461233	66461234	rs35359468	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q24.2	RP11-120M18.2	rs35359468-A	0.7725	3E-9		0.02578941	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1092	chr17	66461233	66461234	rs35359468	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q24.2	RP11-120M18.2	rs35359468-A	0.7725	8E-9		0.02501012	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1092	chr17	66463382	66463383	rs2952290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs2952290-G	0.221256	1E-9		0.0303017	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1092	chr17	66463382	66463383	rs2952290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs2952290-G	0.221256	6E-10		0.0305698	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1092	chr17	66463382	66463383	rs2952290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	17q24.2		rs2952290-G	0.221256	4E-8		0.0273706	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1092	chr17	66463382	66463383	rs2952290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs2952290-G	0.221256	2E-9		0.0300369	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
1092	chr17	66463382	66463383	rs2952290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs2952290-G	0.221256	2E-8		0.0279443	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
1092	chr17	66464413	66464414	rs2952289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q24.2	RP11-120M18.2	rs2952289-T	0.796145	6E-18		0.023958003	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1092	chr17	66464413	66464414	rs2952289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q24.2	RP11-120M18.2	rs2952289-T	0.796141	4E-19		0.024852026	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1092	chr17	66464413	66464414	rs2952289	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	17q24.2		rs2952289-C	0.201968	8E-13		0.018	[0.012-0.024] unit decrease	NR [7250403] (imputed)	N
1092	chr17	66464545	66464546	rs2909218	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	17q24.2	NR	rs2909218-T	0.792744	3E-12		0.016894	[0.012-0.022] unit increase	Affymetrix [16668957] (imputed)	N
1092	chr17	66464682	66464683	rs11653260	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q24.2	WIPI1	rs11653260-A	0.785025	9E-9		0.0134197	[0.0088-0.018] unit increase	Affymetrix [NR] (imputed)	N
1092	chr17	66469399	66469400	rs2952286	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	17q24.2	PRKAR1A	rs2952286-?	NR	5E-10		0.0351478	[0.024-0.046] unit increase	Illumina [4804024] (imputed)	N
1092	chr17	66478315	66478316	rs35338619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	17q24.2	NR	rs35338619-C	NR	8E-16		0.0261	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1092	chr17	66493774	66493775	rs4968897	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	17q24.2	PRKAR1A	rs4968897-T	0.59	4E-6		0.78	[0.45-1.11] g/day increase	Affymetrix [10353649] (imputed)	N
1092	chr17	66501102	66501103	rs56046450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q24.2	NR	rs56046450-A	0.314991	4E-16		0.017587	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1092	chr17	66509142	66509143	rs12941038	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM20A	5,357 Icelandic ancestry individuals	NA	17q24.2		rs12941038-T	0.2242	5E-12		0.154553	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
1092	chr17	66509142	66509143	rs12941038	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q24.2	PRKAR1A	rs12941038-C	0.769815	1E-8		0.00954182	[0.0063-0.0128] unit decrease	Affymetrix [12370749]	N
1092	chr17	66553478	66553479	rs11655740	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q24.2	NR	rs11655740-C	0.0302	7E-6	(EA)	0.0906	[0.051-0.13] unit decrease	Illumina [~ 11800000] (imputed)	N
1092	chr17	66575116	66575117	rs12453524	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q24.2	NR	rs12453524-?	NR	4E-6	(Japanese)	0.6306	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1092	chr17	66576438	66576439	rs2907384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.2		rs2907384-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1093	chr17	66625793	66625794	rs77325336	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	17q24.2	NR	rs77325336-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1093	chr17	66655815	66655816	rs929477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	FAM20A	rs929477-A	0.094	5E-19	(Pseudokinase FAM20A, FAM20A.6433.57.3)	0.37	[0.29-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
1093	chr17	66660534	66660535	rs4968917	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q24.2	FAM20A	rs4968917-C	0.88140625	2E-6	(FAM20A, 6433_57_3)	0.18236624	[0.11-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1093	chr17	66681581	66681582	rs35186465	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Phosphorus levels	42,793 Japanese ancestry individuals	NA	17q24.2	LINC01482, ABCA8	rs35186465-?	NR	1E-8		0.04526	[0.03-0.061] unit increase novel	Illumina [6108953] (imputed)	N
1093	chr17	66683178	66683179	rs4491596	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.2	LINC01482	rs4491596-T	0.764543	4E-17		0.0183816	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
1093	chr17	66691182	66691183	rs11077711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.2		rs11077711-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1093	chr17	66691182	66691183	rs11077711	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.2		rs11077711-?	NR	1E-12		0.0170911	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1093	chr17	66693104	66693105	rs59904049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	17q24.2	NR	rs59904049-G	NR	1E-10		0.0202	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1093	chr17	66701789	66701790	rs11869735	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	17q24.2	intergenic	rs11869735-A	0.898	4E-6		1.076	[0.62-1.53] unit decrease	Illumina [at least 4683137] (imputed)	N
1094	chr17	66721438	66721439	rs4447484	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromosome type)	333 European and unknown ancestry cases, 533 European and unknown ancestry controls	NA	17q24.2	MIR548D2	rs4447484-?	NR	7E-6		1.7	[1.35-2.14]	Illumina [> 2600000] (imputed)	N
1094	chr17	66753585	66753586	rs9302981	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	17q24.2	RP11-118B18.1	rs9302981-C	0.843265	4E-6		0.334955	[0.19-0.48] unit decrease	Illumina [6952813] (imputed)	N
1094	chr17	66774095	66774096	rs11867173	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11867173-T	0.907656	1E-12		0.110984	[0.08-0.142] increase	Affymetrix [11014269] (imputed)	N
1094	chr17	66778074	66778075	rs34216592	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q24.2	LINC01482, ABCA8	rs34216592-?		8E-9		0.0566	[0.037-0.076] unit increase	Illumina [31500000] (imputed)	N
1094	chr17	66786580	66786581	rs9302983	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	17q24.2		rs9302983-T	NR	5E-7		0.827178	[0.75-0.90] unit increase	Affymetrix [825927] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	7E-10		0.0520058	[0.036-0.069] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	2E-11		0.0572687	[0.041-0.074] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs112001035-G	0.940273	3E-11		0.058956	[0.042-0.076] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-8		0.0463304	[0.03-0.063] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-8		0.0479767	[0.031-0.065] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	8E-10		0.0506066	[0.034-0.067] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	5E-9		0.0456531	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	2E-10		0.0507576	[0.035-0.066] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-8		0.0462056	[0.03-0.063] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-11		0.0577313	[0.041-0.075] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs112001035-G	0.940273	8E-12		0.0589321	[0.042-0.076] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	2E-9		0.0522467	[0.035-0.069] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-9		0.0464587	[0.031-0.062] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-9		0.0472136	[0.032-0.063] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-13		0.0576682	[0.042-0.073] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	2E-9		0.0472863	[0.032-0.063] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs112001035-G	0.940273	2E-10		0.0556486	[0.038-0.073] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	8E-11		0.0524937	[0.037-0.068] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-9		0.046842	[0.031-0.062] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	5E-11		0.0538041	[0.038-0.07] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	5E-9		0.0455728	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	1E-10		0.0535854	[0.037-0.07] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-8		0.047904	[0.031-0.065] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-8		0.0485011	[0.031-0.066] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	6E-9		0.0515861	[0.034-0.069] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-14		0.0621884	[0.046-0.078] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-8		0.0482908	[0.031-0.065] unit decrease	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	7E-10		0.0483841	[0.033-0.064] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	4E-14		0.0603126	[0.045-0.076] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	1E-13		0.0605265	[0.045-0.077] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	3E-9		0.0465347	[0.031-0.062] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q24.2		rs112001035-G	0.94027	9E-11		0.0526452	[0.037-0.069] unit increase	NR [11722792] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q24.2		rs112001035-A	NR	1E-25		0.0505	[0.041-0.06] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q24.2	ABCA8	rs112001035-G	0.939507	3E-30		0.0466962	[0.039-0.055] unit increase	Affymetrix [NR] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q24.2	ABCA8	rs112001035-G	0.939463	5E-30		0.0478394	[0.04-0.056] unit increase	Affymetrix [NR] (imputed)	N
1094	chr17	66823804	66823805	rs112001035	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble VCAM-1 levels	5,284 Finnish ancestry individuals	NA	17q24.2	ABCA8	rs112001035-A	0.06	1E-13		0.324	unit decrease	Illumina [NR] (imputed)	N
1095	chr17	66875293	66875294	rs4148008	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMP	5,367 Icelandic ancestry individuals	NA	17q24.2		rs4148008-G	0.3234	4E-124		0.462785	[0.42-0.5] unit increase	Illumina [7506463] (imputed)	N
1095	chr17	66875293	66875294	rs4148008	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	17q24.2		rs4148008-C	0.6809	6E-7	(EA)	0.0067	[0.0042-0.0092] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1095	chr17	66875293	66875294	rs4148008	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q24.2	ABCA8	rs4148008-G	0.33	1E-12		0.028	[NR] unit decrease	NR [NR] (imputed)	N
1095	chr17	66875293	66875294	rs4148008	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q24.2	ABCA8	rs4148008-G	0.32	2E-10		0.42	[0.26-0.58] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs34931250-C	0.940378	4E-13		0.0631625	[0.046-0.08] unit decrease	NR [11722792] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs34931250-C	0.940456	9E-16		0.0665323	[0.05-0.083] unit decrease	NR [11722792] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs34931250-C	0.940456	6E-13		0.0605903	[0.044-0.077] unit increase	NR [11722792] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q24.2		rs34931250-C	0.940456	3E-14		0.0628322	[0.047-0.079] unit increase	NR [11722792] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDIL3	5,362 Icelandic ancestry individuals	NA	17q24.2		rs34931250-T	0.07859	7E-14		0.261225	[0.19-0.33] unit increase	Illumina [7506463] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMP	5,367 Icelandic ancestry individuals	NA	17q24.2		rs34931250-T	0.07859	2E-179		0.951429	[0.89-1.02] unit increase	Illumina [7506463] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32460577	Song L	2020-05-28	Arterioscler Thromb Vasc Biol	Association of TIM-1 (T-Cell Immunoglobulin and Mucin Domain 1) With Incidence of Stroke.	T-Cell Immunoglobulin and Mucin domain 1 levels	4,505 European ancestry individuals	NA	17q24.2	ABCA8	rs34931250-T		6E-10		0.174	[0.12-0.23] unit increase	Illumina [7328171] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q24.2	ABCA8	rs34931250-C	0.939893	3E-8		0.0242963	[0.016-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17q24.2	NR	rs34931250-C	0.93945	3E-21		0.0544774	[0.043-0.066] unit increase	Affymetrix [16580851] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q24.2	NR	rs34931250-T	0.060953000000000035	6E-10		0.0102199	[0.0069-0.0135] unit increase	Affymetrix [16582909] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q24.2	NR	rs34931250-T	0.060953000000000035	1E-7		0.0100642	[0.0064-0.0138] unit increase	Affymetrix [16582965] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q24.2	NR	rs34931250-C	0.939244	3E-15		0.0399468	[0.03-0.05] unit increase	Affymetrix [16585745] (imputed)	N
1095	chr17	66879926	66879927	rs34931250	31070471	Akinkuolie AO	2019-04-11	Arterioscler Thromb Vasc Biol	Group IIA Secretory Phospholipase A2 and Incident Cardiovascular Disease.	Group IIA secretory phospholipase A2 levels in individuals with elevated hsCRP	6,692 European ancestry individuals	NA	17q24.2	ABCA8	rs34931250-T	0.05	3E-9		0.59	[0.35-0.83] unit increase	Illumina [796141]	N
1095	chr17	66882465	66882466	rs4148005	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kidney injury molecule 1 levels	21,758 European ancestry individuals	9,173 individuals	17q24.2		rs4148005-T	0.69	4E-24		0.0912	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1095	chr17	66882465	66882466	rs4148005	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	17q24.2		rs4148005-T	0.6838	2E-7	(EA)	0.0069	[0.0044-0.0094] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1095	chr17	66882465	66882466	rs4148005	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q24.2	ABCA8	rs4148005-T	0.6717	2E-6		0.0286	[0.017-0.04] unit decrease	NR [8041861] (imputed)	N
1095	chr17	66898414	66898415	rs62087820	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.2	NR	rs62087820-T	NR	3E-12		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1095	chr17	66898414	66898415	rs62087820	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q24.2	NR	rs62087820-T	NR	6E-17		0.0259	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1095	chr17	66898414	66898415	rs62087820	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q24.2	NR	rs62087820-T	NR	1E-14		0.0239	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1095	chr17	66900803	66900804	rs36059695	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q24.2	NR	rs36059695-T	0.035	6E-8	(EA)	0.1031	[0.066-0.14] unit decrease	Illumina [~ 11800000] (imputed)	N
1095	chr17	66901365	66901366	rs1373067	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	17q24.2	ABCA8	rs1373067-T	0.701	2E-15	(Trans-ethnic initial)	0.028	[0.021-0.035] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1095	chr17	66904000	66904001	rs16973424	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q24.2	Intergenic	rs16973424-A	NR	3E-7	(between families)	5.144	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1095	chr17	66916494	66916495	rs144216026	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		17q24.2	ABCA8	rs144216026-A	0.017	8E-6	(liability model)	0.31	[0.17-0.45] unit increase	NR [19725427] (imputed)	N
1095	chr17	66919349	66919350	rs201074731	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ABCA8	rs201074731-?	NR	7E-9		1.65224	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1095	chr17	66939473	66939474	rs1860446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMP	5,367 Icelandic ancestry individuals	NA	17q24.2		rs1860446-G	0.482	6E-13		0.138794	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
1095	chr17	66945344	66945345	rs113120414	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	17q24.2		rs113120414-A	0.95	1E-8		0.1006	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1095	chr17	66957322	66957323	rs77235638	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	17q24.2		rs77235638-?	NR	4E-7		0.567	unit decrease	Illumina [11927194] (imputed)	N
1095	chr17	66971897	66971898	rs11077860	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	17q24.2	ABCA9	rs11077860-T	NR	5E-6		1.43	unit increase	Illumina [6778521] (imputed)	N
1095	chr17	66971987	66971988	rs117344825	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs117344825-G	NR	4E-10		0.0518	[0.036-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1095	chr17	66973478	66973479	rs9893173	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q24.2	NR	rs9893173-?	NR	7E-10				Affymetrix [NR]	N
1096	chr17	66988665	66988666	rs1984722	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels x sex interaction in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	17q24.2	ABCA9	rs1984722-?	0.2	9E-6				Illumina [628376]	N
1096	chr17	66990557	66990558	rs76810866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs76810866-T	NR	3E-11		0.0362	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	66990557	66990558	rs76810866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.2	NR	rs76810866-T	NR	2E-10		0.0346	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67041607	67041608	rs9789083	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9789083-T	0.743704	3E-9		0.06025	[0.04-0.081] increase	Affymetrix [11014269] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	2E-46		0.0903	[0.078-0.103] unit increase	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	5E-12		0.0455	[0.033-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	3E-66		0.1135	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	1E-62		0.1055	[0.093-0.118] unit increase	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	2E-12		0.0467	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	4E-50		0.0942	[0.082-0.107] unit increase	Affymetrix [9000000] (imputed)	N
1096	chr17	67060871	67060872	rs113408695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q24.2	NR	rs113408695-C	NR	1E-9		0.0404	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67071578	67071579	rs72850341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.2	NR	rs72850341-A	NR	3E-9		0.0513	[0.034-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67071578	67071579	rs72850341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.2	NR	rs72850341-A	NR	1E-10		0.0561	[0.039-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67071578	67071579	rs72850341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.2	NR	rs72850341-A	NR	9E-10		0.0532	[0.036-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1096	chr17	67072886	67072887	rs12945932	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	17q24.2	ABCA9, ABCA6	rs12945932-T	0.9435	5E-6		0.248	[0.14-0.35] unit increase	NR [NR] (imputed)	N
1096	chr17	67073642	67073643	rs9896308	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	17q24.2	ABCA9, ABCA6	rs9896308-A	0.0558	3E-6		0.2557	[0.15-0.36] unit decrease	NR [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-19		0.123768	[0.097-0.151] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-24		0.132699	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977348	1E-27		0.146419	[0.12-0.17] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	6E-35		0.165153	[0.14-0.19] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	8E-10		0.0820607	[0.056-0.108] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-33		0.157871	[0.13-0.18] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-10		0.0853172	[0.059-0.112] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977336	8E-31		0.159419	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-9		0.0797292	[0.054-0.106] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	8E-9		0.0760528	[0.05-0.102] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-30		0.15577	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-17		0.117284	[0.09-0.144] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-13		0.102215	[0.075-0.129] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-11		0.0907877	[0.064-0.118] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-20		0.125526	[0.099-0.152] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-18		0.120043	[0.093-0.147] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-30		0.153322	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-21		0.128861	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-17		0.113518	[0.087-0.14] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-23		0.136456	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-18		0.118636	[0.092-0.145] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	17q24.2		rs77542162-A	0.97734	5E-11		0.0854359	[0.06-0.111] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-27		0.149245	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-24		0.138846	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977348	3E-29		0.155928	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	6E-23		0.130531	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	6E-44		0.185376	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-14		0.103576	[0.077-0.13] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-29		0.153009	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-16		0.114482	[0.087-0.142] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-20		0.12886	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-16		0.113004	[0.086-0.14] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-14		0.106262	[0.079-0.134] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-21		0.13144	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-19		0.12579	[0.099-0.153] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	9E-34		0.162289	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	6E-18		0.119317	[0.092-0.146] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	8E-21		0.128975	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977348	2E-25		0.140079	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-23		0.132156	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-12		0.0914656	[0.066-0.117] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	9E-38		0.169684	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977336	2E-20		0.12771	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-9		0.077231	[0.051-0.103] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-21		0.122238	[0.097-0.148] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-34		0.166821	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-11		0.0859409	[0.061-0.111] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-23		0.136706	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-18		0.121145	[0.094-0.148] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-20		0.128662	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-16		0.114046	[0.087-0.141] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-22		0.132786	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	8E-12		0.0941753	[0.067-0.121] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-20		0.127918	[0.1-0.15] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-31		0.156166	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-32		0.162505	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-21		0.130311	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-14		0.103665	[0.077-0.131] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-17		0.116787	[0.09-0.144] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-25		0.142486	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-14		0.10313	[0.076-0.13] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-23		0.137455	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-35		0.170928	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-22		0.133729	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-17		0.111511	[0.086-0.137] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977348	9E-18		0.114095	[0.088-0.14] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-44		0.191156	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-26		0.137227	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977336	4E-31		0.154159	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	8E-42		0.181442	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-22		0.133838	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	3E-15		0.109615	[0.082-0.137] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	7E-33		0.164394	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-12		0.0959254	[0.069-0.123] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	5E-18		0.119097	[0.092-0.146] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-24		0.142536	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-16		0.114432	[0.087-0.142] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-27		0.144615	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-19		0.118294	[0.093-0.144] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977348	4E-20		0.121876	[0.096-0.148] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-39		0.17687	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-29		0.147268	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977336	1E-32		0.161232	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-40		0.17922	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-22		0.135902	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	6E-17		0.116303	[0.089-0.144] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-28		0.153063	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-13		0.102885	[0.076-0.13] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-19		0.123654	[0.097-0.151] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	2E-28		0.14854	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	1E-25		0.144912	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17q24.2		rs77542162-A	0.977334	4E-28		0.151787	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL22	5,350 Icelandic ancestry individuals	NA	17q24.2		rs77542162-G	0.02334	2E-13		0.438733	[0.32-0.56] unit increase	Illumina [7506463] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	8E-45		0.1086	[0.094-0.124] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	3E-15		0.0534	[0.04-0.067] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	1E-30		0.0967	[0.08-0.113] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	1E-122		0.1935	[0.18-0.21] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	2E-8		0.0436	[0.029-0.059] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	17q24.2		rs77542162-G	NR	6E-16		0.1511	[0.11-0.19] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	2E-21		0.075	[0.06-0.09] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	3E-24		0.0802	[0.065-0.096] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	5E-62		0.1306	[0.12-0.15] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	4E-27		0.0681	[0.056-0.08] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	2E-20		0.0603	[0.048-0.073] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	17q24.2		rs77542162-G	NR	4E-27		0.0894	[0.073-0.106] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q24.2	ABCA6	rs77542162-A	0.977413	4E-16		0.00593576	[0.0044-0.0075] unit decrease	Affymetrix [13995440] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.02267	3E-31		0.008596	[0.0071-0.0101] unit decrease	Affymetrix [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Total cholesterol levels x fish oil supplementation interaction (2df)	73,962 European ancestry individuals	7,283 European ancestry individuals	17q24.2	ABCA6	rs77542162-G	0.0226	2E-41				Affymetrix [7953515] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Total cholesterol levels x fish oil supplementation interaction (1df)	73,962 European ancestry individuals	7,283 European ancestry individuals	17q24.2	ABCA6	rs77542162-G	0.0226	5E-7		1.587	[1.34-1.83] unit decrease	Affymetrix [7953515] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (2df)	73,832 European ancestry individuals	7,180 European ancestry individuals	17q24.2	ABCA6	rs77542162-G	0.0226	7E-63				Affymetrix [7953137] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (1df)	73,832 European ancestry individuals	7,180 European ancestry individuals	17q24.2	ABCA6	rs77542162-G	0.0226	4E-9		1.9	[1.66-2.14] unit decrease	Affymetrix [7953137] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		17q24.2	ABCA6	rs77542162-A	NR	3E-15		0.02864	[0.015-0.043] nmol/l decrease	NR [19000000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	17q24.2		rs77542162-A	0.977686	7E-53		0.461929	[0.4-0.52] decrease	Affymetrix [11014269] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-A	0.9774	1E-19		0.0576	[0.045-0.07] unit decrease	Affymetrix [18391927] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	17q24.2	ABCA6	rs77542162-A	0.977	2E-15		0.07	[0.052-0.088] unit decrease	Affymetrix [18391927] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	17q24.2	ABCA6	rs77542162-A	0.977	3E-6		0.05	[0.03-0.07] unit decrease	Affymetrix [18391927] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galanin peptide levels	21,758 European ancestry individuals	9,173 individuals	17q24.2		rs77542162-A	0.98	2E-47		0.6861	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.0227039999999999	3E-14		0.05643558	[0.042-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.022695	2E-9		0.0446835	[0.03-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.022708	2E-33		0.0857647	[0.072-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.022698	6E-35		0.09146869	[0.077-0.106] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.022711	7E-34		0.09012582	[0.076-0.105] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q24.2	ABCA6	rs77542162-G	0.022707	5E-28		0.08147218	[0.067-0.096] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-A	0.978927	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.0208776	1E-32				Affymetrix, Illumina [24246363] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.02179	5E-35		0.077089	[0.065-0.089] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.021438	4E-34				Affymetrix, Illumina [20825802] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.022334	3E-37		0.083574	[0.071-0.096] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.0208301	2E-40				Affymetrix, Illumina [24653286] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.021712	2E-43		0.088	[0.076-0.1] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.0208314	1E-32				Affymetrix, Illumina [24558453] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q24.2	NR	rs77542162-G	0.021716	1E-35		0.079397	[0.067-0.092] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	17q24.2	ABCA6	rs77542162-A	0.977	2E-78		0.471	[0.42-0.52] unit increase	Affymetrix [12000000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	17q24.2	ABCA6	rs77542162-A	0.977	7E-66		0.396	[0.35-0.44] unit decrease	Affymetrix [12000000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17q24.2	NR	rs77542162-A	0.977412	3E-169		0.17887	[0.17-0.19] unit decrease	Affymetrix [15000001]	N
1096	chr17	67081277	67081278	rs77542162	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G		6E-36		0.089	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-A	0.977505	6E-74		0.128166	[0.11-0.14] unit decrease	Affymetrix [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-A	0.977518	1E-60		0.115477	[0.1-0.13] unit decrease	Affymetrix [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-A	0.977538	2E-15		0.0526321	[0.04-0.066] unit increase	Affymetrix [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q24.2	ABCA6	rs77542162-?	NR	2E-98		0.1802	[0.17-0.2] unit increase	Affymetrix [5701386] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal hysteresis	6,645 individuals	2,384 European ancestry individuals	17q24.2	ABCA6	rs77542162-G	0.021	7E-11		0.54	[0.38-0.70] mm Hg increase	Affymetrix [NR] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	17q24.2	ABCA6	rs77542162-G	0.0230779	6E-16		0.15111202	[0.11-0.19] unit increase	Affymetrix [7288503] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q24.2		rs77542162-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q24.2		rs77542162-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	ABCA6	rs77542162-A	0.9817	2E-33		0.1283	[0.11-0.15] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q24.2	ABCA6	rs77542162-A	0.9817	4E-52		0.1618	[0.14-0.18] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.023	7E-22	(C-C motif chemokine 22, CCL22.3508.78.3)	0.83	[0.65-1.01] unit increase	Affymetrix [10572788] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.023	2E-15	(Epiphycan, EPYC.9278.9.3)	0.69	[0.51-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-A	0.978	8E-21		0.452	[0.36-0.55] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-A	NR	1E-21		0.162	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-A	0.983	8E-21	(EA)	0.164	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-A	NR	6E-31		0.199	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q24.2	NR	rs77542162-A	0.983	1E-29	(EA)	0.204	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.0232	3E-12		0.08326655	[0.06-0.107] unit increase	Affymetrix [~ 2500000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.0232	2E-13		0.08752499	[0.064-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.0232	2E-16		0.09860702	[0.075-0.122] unit increase	Affymetrix [~ 2500000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q24.2	ABCA6	rs77542162-G	0.0231	2E-13		0.08789105	[0.065-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	17q24.2	ABCA6, ABCA8	rs77542162-G	0.02	2E-18		0.22	[0.17-0.27] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1096	chr17	67081277	67081278	rs77542162	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	17q24.2	ABCA6, ABCA68	rs77542162-G	0.02	2E-13		0.179	[0.13-0.23] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	2E-10		0.0363917	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	1E-10		0.0369894	[0.026-0.048] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	1E-9		0.0348563	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	17q24.2		rs740516-C	0.848868	3E-8		0.0313763	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	17q24.2		rs740516-C	0.848868	4E-9		0.0334514	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	4E-10		0.0357462	[0.025-0.047] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	9E-10		0.0349139	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	2E-10		0.036456	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	17q24.2		rs740516-C	0.848877	3E-8		0.0314554	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
1096	chr17	67082961	67082962	rs740516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	17q24.2		rs740516-G	0.502822	3E-8		0.020591	[0.013-0.028] unit decrease	Illumina [13476599] (imputed)	N
1096	chr17	67082961	67082962	rs740516	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q24.2	ABCA6	rs740516-?		1E-12		0.0286	[0.021-0.036] unit decrease	Illumina [31500000] (imputed)	N
1096	chr17	67082961	67082962	rs740516	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q24.2	ABCA6	rs740516-?		1E-13		0.0365	[0.027-0.046] unit decrease	Illumina [31500000] (imputed)	N
1096	chr17	67082961	67082962	rs740516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q24.2	NR	rs740516-C	0.849078	2E-8		0.00935451	[0.0061-0.0127] unit increase	Affymetrix [16585854] (imputed)	N
1096	chr17	67082961	67082962	rs740516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q24.2	NR	rs740516-C	0.849078	2E-6		0.00884699	[0.005-0.0127] unit increase	Affymetrix [16585866] (imputed)	N
1096	chr17	67082961	67082962	rs740516	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	17q24.2	ABCA6	rs740516-G	0.148541	2E-9		0.04716463	[0.032-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
1097	chr17	67109893	67109894	rs9282552	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q24.3	NR	rs9282552-T	0.649722	5E-18		0.00730503	[0.0056-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1097	chr17	67109893	67109894	rs9282552	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q24.3	NR	rs9282552-T	0.649722	2E-10		0.00634343	[0.0045-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
1097	chr17	67117687	67117688	rs997781	26183928	Leng S	2015-07-16	Cancer Res	Implication of a Chromosome 15q15.2 Locus in Regulating UBR1 and Predisposing Smokers to MGMT Methylation in Lung.	MGMT methylation in smokers	296  European ancestry individuals with MGMT methylation, 867 European ancestry individuals without MGMT methylation	107 European and Hispanic individuals with MGMT methylation, 323 European and Hispanic individuals without MGMT methylation	17q24.3	ABCA6, ABCA10	rs997781-A	0.29	2E-7		1.63	[1.36-1.95]	Illumina [1599980]	N
1097	chr17	67136324	67136325	rs117753190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,368 Icelandic ancestry individuals	NA	17q24.3		rs117753190-G	0.02988	3E-23		0.548494	[0.44-0.66] unit increase	Illumina [7506463] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,366 Icelandic ancestry individuals	NA	17q24.3		rs117753190-G	0.02988	1E-13		0.410385	[0.3-0.52] unit increase	Illumina [7506463] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EPYC	5,352 Icelandic ancestry individuals	NA	17q24.3		rs117753190-G	0.02988	6E-19		0.450915	[0.35-0.55] unit increase	Illumina [7506463] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL12	5,360 Icelandic ancestry individuals	NA	17q24.3		rs117753190-G	0.02988	3E-20		0.495535	[0.39-0.6] unit increase	Illumina [7506463] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL12	5,350 Icelandic ancestry individuals	NA	17q24.3		rs117753190-G	0.02988	1E-16		0.431398	[0.33-0.53] unit increase	Illumina [7506463] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q24.3	ABCA6	rs117753190-G	NR	9E-33	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q24.3	ABCA6	rs117753190-G	NR	6E-32				Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q24.3	ABCA6	rs117753190-G	NR	5E-32				Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q24.3	ABCA6	rs117753190-G	NR	3E-33	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q24.3	ABCA6	rs117753190-G	NR	6E-14		4.717	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q24.3	ABCA6	rs117753190-G	NR	1E-15	(EA)	5.047	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q24.3	ABCA6	rs117753190-G	NR	2E-7	(EA)	4.473	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q24.3	ABCA6	rs117753190-G	NR	2E-6		4.017	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1097	chr17	67136324	67136325	rs117753190	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	17q24.3	NR	rs117753190-C	0.9702	2E-21	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1097	chr17	67138877	67138878	rs12453914	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	17q24.3	ABCA8	rs12453914-A	0.42	2E-6		1.237	[0.69-1.78] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
1097	chr17	67155871	67155872	rs117281630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs117281630-C	NR	2E-11		0.0541	[0.038-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1097	chr17	67155871	67155872	rs117281630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.3	NR	rs117281630-C	NR	5E-10		0.0504	[0.035-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1097	chr17	67181057	67181057	rs370479509	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	17q24.3	ABCA10	rs370479509-TAC	0.19	9E-7		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1097	chr17	67188544	67188545	rs8068468	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	17q24.3	NR	rs8068468-C		8E-7		0.5514	[0.33-0.77] unit increase	Illumina [NR] (imputed)	N
1097	chr17	67188575	67188576	rs8070232	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	17q24.3	ABCA10	rs8070232-A	0.152	4E-43		0.142	[0.12-0.16] unit increase	Affymetrix [12000000] (imputed)	N
1097	chr17	67188575	67188576	rs8070232	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	17q24.3	ABCA10	rs8070232-A	0.152	7E-35		0.119	[0.099-0.139] unit increase	Affymetrix [12000000] (imputed)	N
1097	chr17	67191269	67191270	rs72631343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs72631343-G	NR	3E-28		0.0391	[0.032-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1097	chr17	67191269	67191270	rs72631343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs72631343-G	NR	9E-33		0.0424	[0.035-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1097	chr17	67191269	67191270	rs72631343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.3	NR	rs72631343-G	NR	3E-27		0.0385	[0.031-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1097	chr17	67191269	67191270	rs72631343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q24.3	ABCA10	rs72631343-C	0.871109	5E-21		0.0292878	[0.023-0.035] unit increase	Affymetrix [NR] (imputed)	N
1097	chr17	67191269	67191270	rs72631343	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q24.3	ABCA10	rs72631343-C	0.871112	3E-19		0.0278868	[0.022-0.034] unit increase	Affymetrix [NR] (imputed)	N
1097	chr17	67202530	67202531	rs1011789	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1011789-T	0.335674	3E-11		0.0614396	[0.042-0.08] increase	Affymetrix [11014269] (imputed)	N
1097	chr17	67212389	67212390	rs146540010	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q24.3	Intergenic	rs146540010-?		9E-6		2.84	[1.79-4.50]	Illumina [7645193] (imputed)	N
1097	chr17	67224846	67224847	rs9302891	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	17q24.3	ABCA10	rs9302891-?	NR	7E-6	(adjusted for dose, GFR & AST)	6.616	unit increase (EA, Australian cohort)	Illumina [610255]	N
1098	chr17	67249710	67249711	rs77262773	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	17q24.3	ABCA5	rs77262773-T	0.0261	1E-9		0.081	[0.055-0.11] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1098	chr17	67249710	67249711	rs77262773	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q24.3	ABCA5	rs77262773-T		4E-28		0.075	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1098	chr17	67276382	67276383	rs573431210	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.3	ABCA5	rs573431210-G	0.028	5E-13	(Stromal cell-derived factor 1, CXCL12.3516.60.2)	0.56	[0.4-0.72] unit increase	Affymetrix [10572788] (imputed)	N
1098	chr17	67276382	67276383	rs573431210	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q24.3	ABCA5	rs573431210-G	0.028	1E-12	(Stromal cell-derived factor 1, CXCL12.2330.2.1)	0.55	[0.39-0.71] unit increase	Affymetrix [10572788] (imputed)	N
1098	chr17	67292724	67292725	rs55812797	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs55812797-C	NR	3E-10		0.0336	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1098	chr17	67294429	67294430	rs180697792	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	17q24.3	NR	rs180697792-A	0.2	1E-6		1.34	1.19-1.50	NR [8814543] (imputed)	N
1098	chr17	67304446	67304447	rs11544715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.3	NR	rs11544715-T	NR	3E-11		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1098	chr17	67304446	67304447	rs11544715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs11544715-T	NR	2E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1098	chr17	67322588	67322589	rs76905625	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	17q24.3	ABCA5	rs76905625-C	0.98457	8E-7		0.8478	[0.51-1.19] unit decrease	Affymetrix [8590397] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	6E-45		0.1055	[0.091-0.12] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	1E-19		0.0712	[0.056-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	8E-64		0.1323	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	4E-63		0.1259	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	9E-15		0.0608	[0.046-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	1E-51		0.1136	[0.099-0.128] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67424507	67424508	rs75016991	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q24.3	NR	rs75016991-A	NR	7E-11		0.0513	[0.036-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
1099	chr17	67432384	67432385	rs817565	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	17q24.3	MAP2K6	rs817565-?		3E-6	(EA)	3.779	[NR]	Illumina [936149]	N
1099	chr17	67434224	67434225	rs12451722	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.3	MAP2K6	rs12451722-T	0.585	1E-21		0.0179	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1099	chr17	67476469	67476470	rs9907575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	MAP2K6, RP1-193H18.3	rs9907575-A	NR	2E-8		0.0341035	[0.022-0.046] unit increase	Affymetrix [321169] (imputed)	N
1099	chr17	67481953	67481954	rs72861370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs72861370-A	NR	1E-9		0.0262	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67481953	67481954	rs72861370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs72861370-A	NR	4E-15		0.0341	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67481953	67481954	rs72861370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.3	NR	rs72861370-A	NR	1E-15		0.0348	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1099	chr17	67482262	67482263	rs186461721	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	17q24.3	RP1-193H18.3, MAP2K6	rs186461721-A	0.0017	3E-6		0.6505	[0.38-0.92] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr17	67495962	67495963	rs2716214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs2716214-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1099	chr17	67497366	67497367	rs3809761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	MAP2K6, RP1-193H18.3	rs3809761-A	NR	3E-8		0.0203492	[0.013-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1099	chr17	67497366	67497367	rs3809761	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	17q24.3		rs3809761-G	0.811	5E-9	(EA)	0.059	[0.039-0.079] unit increase	Illumina [11532091] (imputed)	N
1100	chr17	67503500	67503501	rs2521349	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	17q24.3	NR	rs2521349-A	0.38	2E-7		1.06575	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1100	chr17	67503500	67503501	rs2521349	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	17q24.3	NR	rs2521349-A	0.383924	1E-6		1.0718	[1.0421-1.1022]	Affymetrix [16396089] (imputed)	N
1100	chr17	67503500	67503501	rs2521349	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip (hospital diagnosed)	2,396 European ancestry cases, 9,593 European ancestry controls	5,714 Icelandic ancestry cases, 199,421 Icelandic ancestry controls	17q24.3	NR	rs2521349-A	0.383745	1E-9		1.1301	[1.0867-1.1753]	Affymetrix [16122076] (imputed)	N
1100	chr17	67503652	67503653	rs2716212	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	17q24.3		rs2716212-A	0.6164	4E-10		0.93202096	[0.911784513-0.952706495]	Affymetrix, Illumina [NR] (imputed)	N
1100	chr17	67511868	67511869	rs2715824	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	17q24.3	NR	rs2715824-A	0.49	9E-6	(Asian)	0.07	[0.039-0.101] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1100	chr17	67545353	67545354	rs2188699	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	ABCA5	rs2188699-?	NR	3E-7	(NG monomethyl arginine)	0.7307675	[0.45-1.01] unit increase	Affymetrix [at least 2500000] (imputed)	N
1100	chr17	67547200	67547201	rs77231091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs77231091-A	NR	8E-13		0.0496	[0.036-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1100	chr17	67547200	67547201	rs77231091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q24.3	NR	rs77231091-A	NR	5E-11		0.0476	[0.033-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1100	chr17	67547200	67547201	rs77231091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs77231091-A	NR	4E-18		0.0602	[0.047-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1100	chr17	67547200	67547201	rs77231091	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	17q24.3	NR	rs77231091-A	NR	5E-15		0.0544	[0.041-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1100	chr17	67551926	67551927	rs185881420	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	17q24.3	NR	rs185881420-A	0.008941	3E-6		0.7534	[0.44-1.07] unit decrease	Illumina [10677593] (imputed)	N
1100	chr17	67570112	67570113	rs1966327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs1966327-A	NR	2E-8		0.0172215	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
1100	chr17	67573203	67573204	rs8076249	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	17q24.3	MAP2K6	rs8076249-T	0.6	3E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1100	chr17	67585832	67585833	rs530644455	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17q24.3		rs530644455-C	0.0029923	7E-6		0.27492	[0.15-0.4] unit decrease	Affymetrix [15580782] (imputed)	N
1100	chr17	67585832	67585833	rs530644455	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17q24.3		rs530644455-C	0.0029923	6E-7		0.31191	[0.19-0.43] unit decrease	Affymetrix [15580782] (imputed)	N
1100	chr17	67588789	67588790	rs916779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs916779-A	NR	2E-11		0.020343	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
1100	chr17	67588789	67588790	rs916779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs916779-A	NR	2E-11		0.0204906	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
1100	chr17	67588789	67588790	rs916779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs916779-A	NR	1E-8		0.0175371	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1100	chr17	67608082	67608082	rs11432551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs11432551-T	NR	4E-8		0.0179286	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1100	chr17	67613733	67613734	rs9910286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs9910286-A	NR	3E-9		0.0171688	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1100	chr17	67613733	67613734	rs9910286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	AC003051.1	rs9910286-A	NR	3E-9		0.0173052	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1101	chr17	67637086	67637087	rs763700	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.3		rs763700-T	0.41	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
1101	chr17	67637086	67637087	rs763700	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q24.3	NR	rs763700-T	0.388	8E-12				NR [9056863] (imputed)	N
1101	chr17	67639113	67639114	rs12452851	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q24.3	NR	rs12452851-C	0.4978	2E-8				NR [9056863] (imputed)	N
1101	chr17	67691050	67691051	rs2947878	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q24.3		rs2947878-G	0.46	4E-8		5.51	z score increase	Affymetrix [9061022] (imputed)	N
1101	chr17	67727076	67727076	rs34439270	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	17q24.3		rs34439270-A	0.479616307	8E-9				Illumina [7417619] (imputed)	N
1102	chr17	67802351	67802352	rs11870477	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	17q24.3	MAP2K6	rs11870477-?	NR	3E-6	(Change in DAS28)			Illumina [486450]	N
1102	chr17	67840842	67840843	rs7222397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs7222397-T	NR	7E-11		0.0278	[0.019-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1102	chr17	67841176	67841177	rs140328720	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	17q24.3	NR	rs140328720-T		9E-6		0.4953	[0.28-0.71] SD units increase	NR [10700000] (imputed)	N
1102	chr17	67850900	67850901	rs2366017	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		17q24.3	KCNJ16	rs2366017-A	NR	3E-7		0.0938	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1103	chr17	67930771	67930772	rs180107	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	17q24.3	NR	rs180107-A	NR	2E-7		0.00854	[0.0053-0.0118] unit decrease	NR [11010159] (imputed)	N
1103	chr17	67930771	67930772	rs180107	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17q24.3	NR	rs180107-A	NR	2E-10		0.0067992	[0.0047-0.0089] unit decrease	NR [11010159] (imputed)	N
1103	chr17	67930771	67930772	rs180107	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17q24.3	NR	rs180107-A	NR	7E-10	(adjusted for BMI)	0.00647	[0.0044-0.0085] unit decrease	NR [11010159] (imputed)	N
1103	chr17	67930771	67930772	rs180107	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q24.3	NR	rs180107-T	0.5907	4E-9		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1103	chr17	67940978	67940979	rs17698734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	17q24.3	NR	rs17698734-T	NR	3E-9		0.0283	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1103	chr17	67953595	67953596	rs180077	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	LINC01497	rs180077-C	0.326334	2E-10		0.0124916	[0.0086-0.0163] unit decrease	NR [13737936] (imputed)	N
1103	chr17	67953595	67953596	rs180077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.3		rs180077-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1103	chr17	67954198	67954199	rs71375763	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Erysipelatoclostridiaceae abundance in stool	5,959 Finnish ancestry individuals	NA	17q24.3		rs71375763-C	0.0527693	3E-8		0.127234	[0.082-0.172] unit decrease	Illumina [7980478] (imputed)	N
1103	chr17	67957773	67957774	rs180067	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.3		rs180067-?	NR	2E-9		0.013003	[0.0086-0.0174] unit decrease	Affymetrix [20259828] (imputed)	N
1103	chr17	67959694	67959695	rs7223886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs7223886-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1104	chr17	68042201	68042202	rs149001306	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	17q24.3	MAP2K6, KCNJ16	rs149001306-G	0.02	6E-7		0.4268	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1104	chr17	68060450	68060451	rs72856781	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q24.3	NR	rs72856781-T	0.3484	1E-11				NR [9056863] (imputed)	N
1104	chr17	68064407	68064408	rs12602679	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q24.3		rs12602679-T	0.34	4E-27		10.78	z score increase	Affymetrix [9061022] (imputed)	N
1104	chr17	68064407	68064408	rs12602679	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q24.3		rs12602679-T	0.34	3E-8		5.55	z score increase	Affymetrix [9061022] (imputed)	N
1104	chr17	68064407	68064408	rs12602679	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	17q24.3		rs12602679-?	NR	4E-8				NR [9705931] (imputed)	N
1104	chr17	68070533	68070534	rs1990197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs1990197-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1104	chr17	68090206	68090207	rs11867479	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q24.3	KCNJ16	rs11867479-T	0.35339	1E-10		0.017213	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1104	chr17	68090206	68090207	rs11867479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs11867479-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1104	chr17	68090206	68090207	rs11867479	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	17q24.3	KCNJ16/KCNJ2	rs11867479-T	0.34	2E-10		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1104	chr17	68108416	68108417	rs12936361	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	17q24.3	KCNJ16	rs12936361-T	0.83	5E-6	(Age 20-60 years)	0.2338	[0.13-0.33] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
1104	chr17	68139043	68139044	rs9896573	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	17q24.3	KCNJ16	rs9896573-?	NR	2E-8	(3-Hydroxybutyrate)			Illumina [~ 2500000] (imputed)	N
1104	chr17	68141180	68141181	rs8077619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q24.3		rs8077619-A	0.132743	2E-11		0.021899046	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1104	chr17	68141180	68141181	rs8077619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q24.3	NR	rs8077619-A	0.132816	5E-12		0.019081	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1104	chr17	68142112	68142113	rs34237612	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q24.3	NR	rs34237612-C	0.122046	4E-8		0.0562032	[0.036-0.077] unit decrease	Affymetrix [17914406] (imputed)	N
1104	chr17	68147055	68147056	rs12936668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q24.3		rs12936668-A	NR	1E-8		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1104	chr17	68157324	68157325	rs28688305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.3	NR	rs28688305-A	0.109608	1E-14				Affymetrix, Illumina [23467995] (imputed)	N
1105	chr17	68160900	68160901	rs8066863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q24.3		rs8066863-G	NR	2E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1105	chr17	68172325	68172326	rs173135	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.3	KCNJ2	rs173135-T	0.115	3E-30		0.0341	[0.028-0.04] unit decrease	Affymetrix [18391927] (imputed)	N
1105	chr17	68185585	68185586	rs8080944	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (time to first tooth eruption)	11,118 European ancestry individuals		17q24.3	KCNJ16, KCNJ2	rs8080944-A	NR	8E-34		0.341	[0.29-0.4] unit decrease	Illumina [2446724] (imputed)	N
1105	chr17	68185585	68185586	rs8080944	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		17q24.3	KCNJ16, KCNJ2	rs8080944-A	NR	2E-19		0.221	[0.17-0.27] unit increase	Illumina [2446724] (imputed)	N
1105	chr17	68190825	68190826	rs8079702	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (time to first tooth eruption)	5,919 European ancestry related individuals	NA	17q24.3	KCNJ2	rs8079702-G	0.39	4E-22				Illumina [300766]	N
1105	chr17	68190825	68190826	rs8079702	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	17q24.3	KCNJ2	rs8079702-G	0.39	1E-14				Illumina [300766]	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	9E-9	(446 ms)	0.0322504	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	8E-10	(478 ms)	0.0344691	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	8E-10	(358 ms)	0.0344133	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	7E-9	(488 ms)	0.03254	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	7E-10	(356 ms)	0.0345444	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	6E-9	(360 ms)	0.0326192	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	5E-9	(486 ms)	0.0328994	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	5E-9	(460 ms)	0.0328112	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	5E-9	(346 ms)	0.0328011	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	5E-8	(450 ms)	0.0306664	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	5E-10	(468 ms)	0.0348646	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	4E-9	(466 ms)	0.033075	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	4E-9	(354 ms)	0.0330609	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	3E-9	(490 ms)	0.0331924	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	3E-9	(476 ms)	0.0332625	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	3E-8	(452 ms)	0.0311462	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	2E-9	(462 ms)	0.0338721	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	2E-8	(454 ms)	0.0313859	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	2E-8	(448 ms)	0.0315348	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	2E-8	(350 ms)	0.0313213	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	1E-9	(484 ms)	0.0341024	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	1E-9	(474 ms)	0.0341522	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	1E-8	(348 ms)	0.0319978	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	1E-10	(472 ms)	0.0362008	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs236586-A	0.518334	1E-10	(470 ms)	0.0361655	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1105	chr17	68203545	68203546	rs236586	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	17q24.3	NR	rs236586-?	NR	4E-7		1.041194	[0.64-1.44] unit increase	Illumina [26659972] (imputed)	N
1105	chr17	68203545	68203546	rs236586	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q24.3	KCNJ2	rs236586-G	0.466	6E-11		0.64	[0.44-0.84] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1105	chr17	68206396	68206397	rs72863877	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q24.3	NR	rs72863877-?	NR	2E-6	(Japanese)	0.7501	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1105	chr17	68207827	68207828	rs236595	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q24.3	KCNJ2	rs236595-?	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1105	chr17	68212641	68212642	rs236523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs236523-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1105	chr17	68217470	68217471	rs236530	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	17q24.3		rs236530-T	0.746085	1E-13		0.0030169	[0.0022-0.0038] unit decrease	Affymetrix [10829469] (imputed)	N
1105	chr17	68219000	68219001	rs236532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	17q24.3	CALM2P1	rs236532-C	NR	2E-9		0.0192404	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1105	chr17	68219000	68219001	rs236532	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.3	intergenic	rs236532-T	0.6077	2E-16		0.016	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1105	chr17	68219221	68219222	rs236534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236534-T	NR	2E-10		0.0187939	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1105	chr17	68219221	68219222	rs236534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236534-T	NR	1E-10		0.0189966	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1105	chr17	68219221	68219222	rs236534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236534-T	NR	2E-8		0.0169079	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1105	chr17	68219221	68219222	rs236534	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236534-T	NR	9E-10		0.0183105	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1105	chr17	68222960	68222961	rs236570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs236570-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1105	chr17	68226875	68226876	rs236541	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs236541-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1105	chr17	68231251	68231252	rs236548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17q24.3		rs236548-A	NR	1E-15		0.0987	[0.075-0.123] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1105	chr17	68235924	68235925	rs236597	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	17q24.3	NR	rs236597-T	0.74	2E-12		0.117	[0.084-0.15] unit decrease	Affymetrix [10972371] (imputed)	N
1105	chr17	68238882	68238883	rs117919802	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	17q24.3	KCNJ2	rs117919802-?		7E-6				Illumina [2668805]	N
1105	chr17	68244019	68244020	rs9905182	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs9905182-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1105	chr17	68253303	68253304	rs28621943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs28621943-G	NR	1E-9		0.0182182	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1105	chr17	68253303	68253304	rs28621943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs28621943-G	NR	1E-9		0.0182317	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1105	chr17	68258207	68258208	rs992072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs992072-G	NR	3E-13		0.022827	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
1105	chr17	68259445	68259446	rs623011	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q24.3	NR	rs623011-A	0.250911	8E-14		0.0166394	[0.012-0.021] unit increase	NR [NR]	N
1105	chr17	68259445	68259446	rs623011	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis in Graves disease	171 Han Chinese ancestry cases with TPP, 1,404 Han Chinese ancestry cases without TPP	NA	17q24.3	NR	rs623011-?	NR	4E-7		1.83	NR	Illumina [2752055] (imputed)	N
1105	chr17	68259445	68259446	rs623011	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	KCNJ2, CTD-2378E21.1	rs623011-?	0.46	1E-22		1.96	[1.72-2.24]	Illumina [2752055] (imputed)	N
1105	chr17	68259445	68259446	rs623011	22399142	Jongjaroenprasert W	2012-03-08	J Hum Genet	A genome-wide association study identifies novel susceptibility genetic variation for thyrotoxic hypokalemic periodic paralysis.	Thyrotoxic hypokalemic periodic paralysis	78 Thai ancestry cases, 74 Thai ancestry controls	28 Thai ancestry cases, 48 Thai ancestry controls	17q24.3	KCNJ2	rs623011-A	0.45	4E-12		5.47	[3.04-9.83]	Illumina [508393]	N
1105	chr17	68260327	68260327	rs143339276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q24.3		rs143339276-TTTCC	NR	2E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1105	chr17	68267023	68267024	rs236500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs236500-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1105	chr17	68268735	68268736	rs236504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236504-C	NR	5E-21		0.0266943	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1105	chr17	68268735	68268736	rs236504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs236504-C	NR	2E-21		0.0268976	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1105	chr17	68269139	68269140	rs8079210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs8079210-C	NR	1E-14		0.0241366	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1105	chr17	68269837	68269838	rs180505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs180505-A	NR	9E-15		0.0242603	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1105	chr17	68270954	68270955	rs1399185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs1399185-G	NR	6E-10		0.0200932	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1105	chr17	68271195	68271196	rs4583288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs4583288-A	NR	7E-20		0.0268328	[0.021-0.033] unit decrease	Affymetrix [321788] (imputed)	N
1105	chr17	68271195	68271196	rs4583288	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CALM2P1	rs4583288-A	NR	5E-21		0.0266424	[0.021-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1105	chr17	68272353	68272354	rs17714860	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	KCNJ2, CTD-2378E21.1	rs17714860-?	0.79	2E-8		1.74	[1.44-2.10]	Illumina [2752055] (imputed)	N
1105	chr17	68273719	68273720	rs9892944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q24.3		rs9892944-G	NR	2E-18		0.0162	[0.013-0.02] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1105	chr17	68276234	68276235	rs28617256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs28617256-A	NR	3E-19		0.0301799	[0.024-0.037] unit decrease	Affymetrix [321788] (imputed)	N
1105	chr17	68276234	68276235	rs28617256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs28617256-A	NR	4E-22		0.0312389	[0.025-0.038] unit decrease	Affymetrix [321016] (imputed)	N
1105	chr17	68277931	68277932	rs6501383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q24.3		rs6501383-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1105	chr17	68281722	68281722	rs34452960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q24.3		rs34452960-AC	0.75256	8E-23		0.025235415	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1105	chr17	68281722	68281722	rs34452960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q24.3		rs34452960-AC	0.752544	7E-21		0.024028728	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1105	chr17	68286648	68286649	rs312722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q24.3	NR	rs312722-C	0.753017	7E-25		0.023683	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1105	chr17	68288118	68288119	rs236539	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q24.3	KCNJ2, CASC17	rs236539-?	NR	7E-11		0.5547	[0.39-0.72] unit increase	Affymetrix [11100000] (imputed)	N
1106	chr17	68291132	68291133	rs6501384	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	17q24.3	NR	rs6501384-T	0.33	6E-6		1.41	[1.13-1.76]	Illumina [~ 550000]	N
1106	chr17	68291370	68291371	rs411079	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	KCNJ2, CTD-2378E21.1	rs411079-?	0.67	1E-10		1.64	[1.40-1.91]	Illumina [2752055] (imputed)	N
1106	chr17	68292980	68292981	rs431930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q24.3	NR	rs431930-C	0.717428	2E-27				Affymetrix, Illumina [19872809] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2529683-C	NR	9E-15		0.0227668	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2529683-C	NR	5E-15		0.0229987	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2529683-C	NR	1E-9		0.0185391	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2529683-C	NR	3E-10		0.0184491	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	17q24.3	KCNJ2	rs2529683-C	0.6378	5E-6		0.0272	[0.015-0.039] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	17q24.3	KCNJ2	rs2529683-C	0.6378	8E-7		0.0291	[0.018-0.041] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1106	chr17	68294990	68294991	rs2529683	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	17q24.3	KCNJ2	rs2529683-C	0.6378	2E-6		0.0283	[0.017-0.04] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1106	chr17	68295885	68295886	rs312696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	17q24.3		rs312696-C	0.508566	9E-10		0.0271891	[0.018-0.036] unit decrease	Illumina [13470073] (imputed)	N
1106	chr17	68299784	68299785	rs7222503	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	NR	rs7222503-?	0.82	6E-8		1.79	[1.45-2.20]	Illumina [2752055] (imputed)	N
1106	chr17	68306836	68306837	rs312729	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis in Graves disease	171 Han Chinese ancestry cases with TPP, 1,404 Han Chinese ancestry cases without TPP	NA	17q24.3	NR	rs312729-?	NR	2E-8		1.94	NR	Illumina [2752055] (imputed)	N
1106	chr17	68306836	68306837	rs312729	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	KCNJ2, CTD-2378E21.1	rs312729-?	0.47	8E-29		2.08	[1.83-2.38]	Illumina [2752055] (imputed)	N
1106	chr17	68313485	68313486	rs17715862	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs17715862-A	NR	3E-8		0.0353285	[0.023-0.048] unit decrease	Affymetrix [321016] (imputed)	N
1106	chr17	68318636	68318637	rs312743	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	319 Chinese ancestry cases, 3,516 Chinese ancestry controls	NA	17q24.3	KCNJ2	rs312743-T	0.5035	1E-21		0.39004233	0.196982332842152-0.583102332842152	Illumina [7077246] (imputed)	N
1106	chr17	68318636	68318637	rs312743	33105104	Hoi-Yee Li G	2020-12-01	Eur J Endocrinol	Genome-wide meta-analysis reveals novel susceptibility loci for thyrotoxic periodic paralysis.	Thyrotoxic periodic paralysis	306 Chinese ancestry male cases, 3,516 Chinese ancestry controls	NA	17q24.3	KCNJ2	rs312743-T	0.5035	2E-22		2.66	2.18563848789302-3.23714574938709	Illumina [7076963] (imputed)	N
1106	chr17	68325867	68325868	rs10775360	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q24.3	KCNJ2	rs10775360-T	0.292	1E-12		0.76	[0.54-0.98] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1106	chr17	68326337	68326338	rs312691	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis in Graves disease	171 Han Chinese ancestry cases with TPP, 1,404 Han Chinese ancestry cases without TPP	NA	17q24.3	NR	rs312691-?	NR	5E-9		1.99	NR	Illumina [2752055] (imputed)	N
1106	chr17	68326337	68326338	rs312691	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	CTD-2378E21.1	rs312691-C	0.46	6E-24		2.02	[1.77-2.31]	Illumina [2752055] (imputed)	N
1106	chr17	68326337	68326338	rs312691	22863731	Cheung CL	2012-08-05	Nat Genet	Genome-wide association study identifies a susceptibility locus for thyrotoxic periodic paralysis at 17q24.3.	Thyrotoxic hypokalemic periodic paralysis	69 Chinese ancestry cases, 1,170 East Asian ancestry controls	54 Chinese ancestry cases, 400 Taiwanese ancestry controls	17q24.3	KCNJ16, KCNJ2	rs312691-C	0.76	8E-14		3.2	[2.40-4.40]	Illumina [486782]	N
1106	chr17	68332897	68332898	rs312685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs312685-A	NR	3E-21		0.0311206	[0.025-0.038] unit increase	Affymetrix [319769] (imputed)	N
1106	chr17	68332897	68332898	rs312685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs312685-A	NR	4E-21		0.0310629	[0.025-0.038] unit increase	Affymetrix [319769] (imputed)	N
1106	chr17	68335329	68335330	rs1514245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q24.3		rs1514245-T	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1106	chr17	68335966	68335967	rs34741950	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.3		rs34741950-G	0.23	5E-12		6.91	z score increase	Affymetrix [9061022] (imputed)	N
1106	chr17	68335966	68335967	rs34741950	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q24.3	NR	rs34741950-G	0.2226	6E-12				NR [9056863] (imputed)	N
1106	chr17	68337184	68337185	rs7219869	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q24.3	KCNJ2, CASC17	rs7219869-G	0.44	1E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1106	chr17	68343538	68343539	rs312750	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q24.3	KCNJ16, KCNJ2-AS1	rs312750-A	0.471001981875901	3E-8		0.014831157	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	8E-10	(-66 ms)	0.0397207	[0.027-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	7E-12	(-42 ms)	0.0443064	[0.032-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	6E-10	(-60 ms)	0.0400376	[0.027-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	2E-8	(-40 ms)	0.0362441	[0.024-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	2E-13	(-44 ms)	0.0476126	[0.035-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	2E-10	(-58 ms)	0.0409871	[0.028-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	1E-9	(-54 ms)	0.0393879	[0.027-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	1E-10	(-56 ms)	0.0416743	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347266	68347267	rs312755	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q24.3	KCNJ2	rs312755-T	0.718201	1E-10	(-46 ms)	0.0414716	[0.029-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1106	chr17	68347337	68347338	rs3844438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs3844438-T	NR	5E-8		0.015642	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
1106	chr17	68347337	68347338	rs3844438	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q24.3	KCNJ2, CASC17	rs3844438-T	0.48	3E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1106	chr17	68347914	68347928	rs71356607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs71356607-GA	NR	7E-23		0.0279926	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68347924	68347925	rs117896660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs117896660-A	NR	9E-23		0.027893	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68347925	68347926	rs117426558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs117426558-G	NR	4E-22		0.0284658	[0.023-0.034] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68347925	68347926	rs117426558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs117426558-G	NR	5E-21		0.0267144	[0.021-0.032] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68353829	68353830	rs7216514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs7216514-C	NR	2E-8		0.0169934	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1106	chr17	68375945	68375946	rs4485410	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q24.3	KCNJ2, SOX9	rs4485410-T	0.78	4E-10		6.24	z-score increase	Affymetrix [4314223] (imputed)	N
1106	chr17	68376822	68376823	rs12451295	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis in Graves disease	171 Han Chinese ancestry cases with TPP, 1,404 Han Chinese ancestry cases without TPP	NA	17q24.3	NR	rs12451295-?	NR	4E-6		1.72	NR	Illumina [2752055] (imputed)	N
1106	chr17	68376822	68376823	rs12451295	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	CTD-2378E21.1, SOX9	rs12451295-C	0.49	2E-13		1.61	[1.41-1.84]	Illumina [2752055] (imputed)	N
1106	chr17	68380656	68380657	rs16975694	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	NR	rs16975694-?	0.69	1E-6		1.45	[1.25-1.69]	Illumina [2752055] (imputed)	N
1106	chr17	68385708	68385709	rs35444446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs35444446-G	NR	2E-22		0.0294126	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68385708	68385709	rs35444446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs35444446-G	NR	2E-22		0.029367	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68385708	68385709	rs35444446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs35444446-G	NR	6E-18		0.0269869	[0.021-0.033] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68385708	68385709	rs35444446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs35444446-G	NR	1E-15		0.0240767	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68385708	68385709	rs35444446	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs35444446-G	NR	3E-9		0.0180347	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1106	chr17	68398780	68398782	rs756916254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs756916254-GA	NR	3E-14		0.0251399	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68398780	68398782	rs756916254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs756916254-GA	NR	5E-14		0.0249146	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68398780	68398782	rs756916254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs756916254-GA	NR	2E-13		0.0252297	[0.018-0.032] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68398780	68398782	rs756916254	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs756916254-GA	NR	1E-15		0.0265149	[0.02-0.033] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68399111	68399112	rs34559440	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	17q24.3	KCNJ2	rs34559440-T	0.68	1E-8		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1106	chr17	68399111	68399112	rs34559440	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	17q24.3	KCNJ2	rs34559440-T	0.68	3E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1106	chr17	68405993	68405994	rs984877	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs984877-A	0.3267	1E-8	(EA, women)	0.0308	[0.02-0.041] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1106	chr17	68405993	68405994	rs984877	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q24.3	KCNJ2	rs984877-A	0.3228	6E-6	(EA, women)	0.0282	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1106	chr17	68405993	68405994	rs984877	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs984877-?	0.3267	2E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1106	chr17	68405993	68405994	rs984877	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs984877-?	0.3267	2E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1106	chr17	68411444	68411445	rs1468572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs1468572-C	NR	4E-8		0.0189105	[0.012-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68411444	68411445	rs1468572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs1468572-C	NR	3E-11		0.0237724	[0.017-0.031] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68411444	68411445	rs1468572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs1468572-C	NR	3E-9		0.0203114	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68411444	68411445	rs1468572	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (response to exercise)	51,897 European ancestry individuals	NA	17q24.3	KCNJ2	rs1468572-T	0.78	3E-11		0.05	[0.036-0.064] unit increase	Affymetrix [~ 9000000] (imputed)	N
1106	chr17	68413305	68413306	rs62070146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs62070146-G	NR	7E-9		0.0190128	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1106	chr17	68414994	68414995	rs10491171	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q24.3		rs10491171-C	0.865	4E-9		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	3E-41		0.0394084	[0.034-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	6E-41		0.0392407	[0.034-0.045] unit decrease	Affymetrix [319769] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	4E-16		0.0240298	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	1E-25		0.0317386	[0.026-0.038] unit increase	Affymetrix [321788] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	2E-22		0.0285071	[0.023-0.034] unit increase	Affymetrix [321016] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975758-A	NR	1E-18		0.0261329	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1106	chr17	68419329	68419330	rs16975758	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q24.3	KCNJ2	rs16975758-G	0.623171	5E-9		0.0115692	[0.0077-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
1107	chr17	68421802	68421803	rs1396517	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs1396517-T	0.5003	4E-9	(EA)	0.0208	[0.014-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68421802	68421803	rs1396517	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs1396517-T	0.5003	3E-10	(EA, women)	0.0283	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68423058	68423059	rs16975768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975768-T	NR	3E-12		0.0320122	[0.023-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68423058	68423059	rs16975768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975768-T	NR	3E-12		0.0321448	[0.023-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68423058	68423059	rs16975768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs16975768-T	NR	2E-8		0.0268994	[0.018-0.036] unit increase	Affymetrix [321788] (imputed)	N
1107	chr17	68423058	68423059	rs16975768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs16975768-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1107	chr17	68429310	68429311	rs73387155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs73387155-C	NR	3E-32		0.0354699	[0.03-0.041] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68429310	68429311	rs73387155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs73387155-C	NR	1E-31		0.0351663	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68429310	68429311	rs73387155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs73387155-C	NR	2E-31		0.0362776	[0.03-0.042] unit decrease	Affymetrix [321788] (imputed)	N
1107	chr17	68429310	68429311	rs73387155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs73387155-C	NR	3E-31		0.0348948	[0.029-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1107	chr17	68429310	68429311	rs73387155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs73387155-C	NR	4E-10		0.0189886	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
1107	chr17	68430992	68430993	rs1396515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs1396515-G	NR	9E-41		0.0391539	[0.033-0.045] unit decrease	Affymetrix [321788] (imputed)	N
1107	chr17	68430992	68430993	rs1396515	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q24.3	KCNJ2	rs1396515-C	0.521	2E-25		0.98	[0.8-1.16] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1107	chr17	68431025	68431026	rs1396514	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q24.3	NR	rs1396514-T	0.5119	1E-39		0.0226	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1107	chr17	68431025	68431026	rs1396514	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q24.3	NR	rs1396514-T	0.5116	3E-19		0.0151	[0.012-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1107	chr17	68433724	68433725	rs16975792	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	CTD-2378E21.1, SOX9	rs16975792-?	0.57	4E-8		1.46	[1.27-1.67]	Illumina [2752055] (imputed)	N
1107	chr17	68434199	68434200	rs6501392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs6501392-A	NR	1E-38		0.0366907	[0.031-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1107	chr17	68439659	68439660	rs2159437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q24.3		rs2159437-G	NR	6E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1107	chr17	68439659	68439660	rs2159437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2159437-A	NR	4E-45		0.0397984	[0.034-0.045] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68439659	68439660	rs2159437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2159437-A	NR	4E-45		0.0397817	[0.034-0.045] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68439659	68439660	rs2159437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2159437-A	NR	7E-12		0.0195051	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1107	chr17	68439659	68439660	rs2159437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs2159437-A	NR	3E-15		0.0225157	[0.017-0.028] unit increase	Affymetrix [321169] (imputed)	N
1107	chr17	68446860	68446861	rs11654387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs11654387-?	NR	2E-36				Affymetrix [~ 8270000] (imputed)	N
1107	chr17	68446860	68446861	rs11654387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q24.3		rs11654387-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1107	chr17	68446860	68446861	rs11654387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q24.3	NA	rs11654387-C	0.4878	1E-19		0.0161	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1107	chr17	68453326	68453327	rs12941598	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	17q24.3		rs12941598-G	0.786	5E-13		0.046	[0.034-0.058] bpm increase	Affymetrix [9800000] (imputed)	N
1107	chr17	68453326	68453327	rs12941598	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	17q24.3		rs12941598-G	0.785534	5E-8	(female)	0.0495224	[0.032-0.067] bpm increase	Affymetrix [9800000] (imputed)	N
1107	chr17	68453326	68453327	rs12941598	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	17q24.3		rs12941598-G	0.785534	5E-7	(male)	0.0503139	[0.031-0.070] bpm increase	Affymetrix [9800000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q24.3	KCNJ2	rs8066985-A	0.483091	2E-10		0.0127223	[0.0088-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q24.3	NR	rs8066985-A	0.49	1E-35		0.022	[0.019-0.025] unit increase	Affymetrix [2446094] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q24.3	NR	rs8066985-A	0.49	5E-8				Affymetrix [2446094] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs8066985-A	0.4961	1E-8		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs8066985-?	0.4961	7E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q24.3	KCNJ2	rs8066985-A	0.4857	6E-10	(women)	0.0281	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q24.3	KCNJ2	rs8066985-A	0.4857	3E-10		0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	17q24.3	KCNJ2, KCNJ16, KCNJ2-AS1	rs8066985-A	0.509	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	17q24.3	KCNJ16, KCNJ2, KCNJ2-AS1	rs8066985-A	0.5085	9E-7		0.0252	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs8066985-A	0.5094	1E-7	(EA)	0.0178	[0.011-0.024] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs8066985-A	0.5045	4E-9	(EA, women)	0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs8066985-A	0.4999	3E-8		0.0183	[0.012-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68453344	68453345	rs8066985	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	17q24.3	KCNJ2	rs8066985-A	0.4965	1E-9	(women)	0.0266	[0.018-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1107	chr17	68454819	68454820	rs9904480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q24.3	CTD-2378E21.1	rs9904480-C	NR	5E-8		0.0167513	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1107	chr17	68454819	68454820	rs9904480	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	17q24.3	KCNJ2	rs9904480-C	0.483162	4E-12		0.00268187	[0.0019-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1107	chr17	68463224	68463225	rs7215999	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs7215999-T	NR	7E-12		0.0241858	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1107	chr17	68464661	68464662	rs10221267	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q24.3	KCNJ2	rs10221267-T	0.511715	7E-11		0.016717	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1107	chr17	68464816	68464817	rs717118	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q24.3	KCNJ2, SOX9	rs717118-T	0.48	1E-10		6.46	z-score increase	Affymetrix [4312306] (imputed)	N
1107	chr17	68471072	68471073	rs1605750	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q24.3	NR	rs1605750-A	0.5097130000000001	5E-10		0.00463597	[0.0031-0.0062] unit increase	Affymetrix [16582909] (imputed)	N
1107	chr17	68473803	68473804	rs9913332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q24.3		rs9913332-A	NR	2E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	17q24.3		rs4399570-G	0.7	2E-14		0.048	[0.036-0.06] unit increase	Affymetrix [NR]	N
1107	chr17	68479344	68479345	rs4399570	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	17q24.3		rs4399570-G	0.7	5E-13		0.046	[0.034-0.058] unit increase	Affymetrix [NR]	N
1107	chr17	68479344	68479345	rs4399570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs4399570-A	NR	5E-13		0.0221759	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs4399570-A	NR	4E-13		0.022257	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs4399570-A	NR	5E-18		0.0265283	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	17q24.3	KCNJ2	rs4399570-G	0.699	7E-71	(women)	0.137	[0.12-0.15] unit increase	Affymetrix [~ 9000000] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	17q24.3	KCNJ2	rs4399570-G	0.699	5E-143		0.142	[0.13-0.15] unit increase	Affymetrix [~ 9000000] (imputed)	N
1107	chr17	68479344	68479345	rs4399570	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	17q24.3	KCNJ2	rs4399570-G	0.699	2E-74	(men)	0.148	[0.13-0.16] unit increase	Affymetrix [~ 9000000] (imputed)	N
1107	chr17	68489553	68489554	rs17717388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	KCNJ16	rs17717388-?	NR	5E-6	(glycodeoxycholate)	0.51756454	[0.3-0.74] unit increase	Affymetrix [at least 2500000] (imputed)	N
1107	chr17	68490142	68490143	rs199667588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs199667588-G	NR	2E-18		0.0316575	[0.025-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68490142	68490143	rs199667588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs199667588-G	NR	2E-18		0.031593	[0.025-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1107	chr17	68490142	68490143	rs199667588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q24.3	CTD-2378E21.1	rs199667588-G	NR	5E-10		0.0227171	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1107	chr17	68492255	68492256	rs62069783	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	17q24.3	NR	rs62069783-?	0.6	6E-6		1.37	[1.19-1.57]	Illumina [2752055] (imputed)	N
1107	chr17	68494991	68494992	rs17779747	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	17q24.3	KCNJ2	rs17779747-T	0.35	6E-12		1.02	[0.53-1.51] ms decrease	Affymetrix, Illumina [2557000] (imputed)	N
1107	chr17	68498124	68498125	rs34280469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs34280469-G	NR	2E-10		0.0293732	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68498124	68498125	rs34280469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs34280469-G	NR	2E-10		0.0294693	[0.02-0.039] unit increase	Affymetrix [319769] (imputed)	N
1107	chr17	68498124	68498125	rs34280469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs34280469-G	NR	1E-14		0.0370662	[0.028-0.046] unit decrease	Affymetrix [321788] (imputed)	N
1107	chr17	68498124	68498125	rs34280469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs34280469-G	NR	1E-12		0.0328178	[0.024-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1107	chr17	68506681	68506682	rs7218368	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	17q24.3	KCNJ2	rs7218368-?	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
1107	chr17	68507435	68507436	rs1594477	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q24.3	KCNJ2	rs1594477-T	0.3326	2E-7	(women)	0.0326	[0.02-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68507435	68507436	rs1594477	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs1594477-?	0.3379	9E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68508991	68508992	rs173269	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs173269-A	0.3376	3E-8	(EA, women)	0.0308	[0.02-0.042] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68508991	68508992	rs173269	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	17q24.3	KCNJ2	rs173269-A	0.3319	5E-7	(EA, women)	0.0317	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68508991	68508992	rs173269	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	17q24.3	KCNJ2	rs173269-?	0.3376	4E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1107	chr17	68520388	68520389	rs4793397	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	17q24.3	KCNJ2	rs4793397-T	0.464	3E-10		1.178	[0.81-1.54] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
1107	chr17	68521860	68521861	rs7219669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs7219669-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1107	chr17	68521860	68521861	rs7219669	22342860	Marjamaa A	2012-02-15	Heart Rhythm	A common variant near the KCNJ2 gene is associated with T-peak to T-end interval.	Early cardiac repolarization	1,870 European ancestry individuals	3,745 European ancestry individuals	17q24.3	KCNJ2	rs7219669-T	0.38	6E-14		1.7	ms decrease	Illumina [541864]	N
1107	chr17	68531966	68531967	rs721249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs721249-T	NR	5E-9		0.0197613	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1108	chr17	68557202	68557203	rs1991680	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	RP11-1058G23.1	rs1991680-G	NR	1E-10		0.0204287	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1108	chr17	68559266	68559267	rs76407752	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs76407752-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1108	chr17	68560788	68560789	rs17763769	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	17q24.3	KCNJ2	rs17763769-A	0.146	5E-11		0.89	[0.62-1.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1108	chr17	68630730	68630731	rs76062157	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	17q24.3	LOC105371884, KCNJ2	rs76062157-G	0.01	6E-7	(women)	0.53	[0.31-0.75] unit decrease	Affymetrix, Illumina [6523511] (imputed)	N
1108	chr17	68634064	68634065	rs16975985	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q24.3	KCNJ2	rs16975985-G	0.079	5E-6	(LDL )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1108	chr17	68644188	68644189	rs17718586	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	17q24.3	intergenic	rs17718586-?	0.10	2E-8	(Recessive)	1.53	[1.32-1.78]	Affymetrix [319222]	N
1108	chr17	68661634	68661635	rs12602300	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q24.3	NR	rs12602300-?	NR	1E-7	(Latino)	0.7551	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1108	chr17	68672962	68672963	rs2058176	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs2058176-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1109	chr17	68683202	68683203	rs7210142	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs7210142-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1109	chr17	68700732	68700733	rs2159311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs2159311-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1109	chr17	68714213	68714214	rs62070600	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal overload gout	486 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	17q24.3	KCNJ2, CASC17	rs62070600-G	0.065	8E-7		1.76	[1.4-2.2]	Illumina [7206774] (imputed)	N
1109	chr17	68718733	68718734	rs4793501	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q24.3	NR	rs4793501-C		5E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
1109	chr17	68718733	68718734	rs4793501	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q24.3	NA	rs4793501-?		3E-24				Affymetrix, Illumina [NR] (imputed)	N
1109	chr17	68718733	68718734	rs4793501	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q24.3	KCNJ2, BC039327	rs4793501-T	0.5748	6E-13		7.212	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1109	chr17	68718733	68718734	rs4793501	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	17q24.3	KCNJ2	rs4793501-C	0.42	3E-8		0.08	[0.053-0.107] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1109	chr17	68724035	68724036	rs929474	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q24.3	NR	rs929474-A	0.6618	9E-11	(EA)	0.0998	[0.07-0.13] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1109	chr17	68724035	68724036	rs929474	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q24.3	NR	rs929474-A	0.6186	2E-8		0.0767	[0.05-0.104] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1109	chr17	68724035	68724036	rs929474	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17q24.3	KCNJ2	rs929474-A	0.43	3E-11	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
1109	chr17	68724035	68724036	rs929474	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	17q24.3	KCNJ2	rs929474-A	0.42	2E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
1109	chr17	68771650	68771651	rs117879743	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	17q24.3	NR	rs117879743-?	NR	2E-6		0.2937	[0.17-0.42] unit increase	Illumina [at least 560000] (imputed)	N
1109	chr17	68800783	68800784	rs60994771	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	17q24.3	NR	rs60994771-C	NR	3E-6	(PM %)	0.2674	[NR] unit decrease	Illumina [1190033]	N
1110	chr17	68825021	68825022	rs12948233	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	CASC17	rs12948233-G	0.738515	6E-10		0.0130953	[0.009-0.0172] unit increase	NR [13737936] (imputed)	N
1110	chr17	68825722	68825723	rs760475812	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	17q24.3	RP11-238F2.1	rs760475812-A	0.0016	3E-7		1.8442	[1.14-2.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1110	chr17	68828088	68828089	rs1990193	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q24.3	KCNJ2	rs1990193-C	0.385	9E-6	(Vitamin B12 )	0.03	[NR] pmol/L increase	Illumina [899892]	N
1110	chr17	68861044	68861045	rs7217264	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	17q24.3	MPP3	rs7217264-?	NR	4E-9		0.00872	[0.0032-0.0142] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1110	chr17	68878486	68878487	rs1015657	22648509	Wang KS	2012-05-31	J Mol Neurosci	PKNOX2 is associated with formal thought disorder in schizophrenia: a meta-analysis of two genome-wide association studies.	Formal thought disorder in schizophrenia	835 European ancestry cases, 2,694 European ancestry controls	NA	17q24.3	KCNJ2	rs1015657-?	0.54	2E-6		1.32	[NR]	Affymetrix [729454]	N
1110	chr17	68913505	68913506	rs2079515	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	17q24.3	CASC17	rs2079515-C	0.47	4E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1110	chr17	68929434	68929435	rs2190547	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive episodes in bipolar disorder	723 European ancestry cases	NA	17q24.3	KCNJ2	rs2190547-?	NR	9E-7		0.08	[NR] unit increase	Affymetrix [329806] (imputed)	N
1111	chr17	68976414	68976415	rs6501431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs6501431-T	0.7843	1E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1111	chr17	68976414	68976415	rs6501431	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	17q24.3	KCNJ2	rs6501431-T	0.798	3E-9	(EA)	23.053	[15.44-30.67] ml increase	Affymetrix, Illumina [2762059] (imputed)	N
1111	chr17	68977001	68977002	rs11077539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q24.3		rs11077539-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1111	chr17	68995217	68995218	rs28584904	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17q24.3	ENSG00000271101	rs28584904-?	NR	2E-8		0.01435964	[0.0093-0.0194] unit increase	NR [7306098]	N
1111	chr17	69073191	69073192	rs9898686	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17q24.3	KCNJ2	rs9898686-T	NR	2E-7	(BDRABS)	0.0138	[0.0085-0.0191] unit increase	Illumina [NR] (imputed)	N
1111	chr17	69073644	69073645	rs68120025	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17q24.3	KCNJ2	rs68120025-C	NR	3E-7	(BDRABS, EA)	0.014	[0.0081-0.0199] unit increase	Illumina [NR] (imputed)	N
1111	chr17	69073669	69073670	rs68193035	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17q24.3	KCNJ2	rs68193035-A	NR	6E-7	(BDRBASE, EA)	1.27	[0.78-1.76] unit increase	Illumina [NR] (imputed)	N
1111	chr17	69073669	69073670	rs68193035	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	17q24.3	KCNJ2	rs68193035-A	NR	2E-7	(BDRPRED)	1.26	[0.79-1.73] unit increase	Illumina [NR] (imputed)	N
1112	chr17	69076163	69076164	rs6501435	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	17q24.3	NR	rs6501435-?		2E-7		1.51	[1.29-1.76]	Illumina [539473] (imputed)	N
1112	chr17	69076163	69076164	rs6501435	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	17q24.3	NR	rs6501435-G	0.4881	4E-7		0.1533	[0.094-0.212] unit decrease	Illumina [10677593] (imputed)	N
1112	chr17	69100196	69100197	rs9903422	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	KCNJ16	rs9903422-?	NR	1E-6	(TAG 56:4)	0.3700819	[0.22-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
1112	chr17	69106873	69106874	rs17765344	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	17q24.3	BC039327, CASC17	rs17765344-A	0.48	4E-21		1.19	[1.15-1.23]	Illumina [1531807] (imputed)	N
1112	chr17	69107672	69107673	rs8071558	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q24.3	NR	rs8071558-C	0.483	7E-11		1.14	[1.09-1.18]	Affymetrix [up to 19977088] (imputed)	N
1112	chr17	69108752	69108753	rs1859962	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17q24.3		rs1859962-?	NR	4E-16		1.15016	[1.12-1.18]	NR [680312]	N
1112	chr17	69108752	69108753	rs1859962	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	17q24.3	NR	rs1859962-G	NR	9E-23		1.15	NR	Affymetrix [at least 232408] (imputed)	N
1112	chr17	69108752	69108753	rs1859962	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FEV1)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	17q24.3	CASC17	rs1859962-G	0.48171	4E-11	(EA)	6.6	unit increase (z score)	Illumina [179215]	N
1112	chr17	69108752	69108753	rs1859962	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	17q24.3	NR	rs1859962-G	0.48	1E-91		1.17	[1.16-1.19]	Illumina [20370935] (imputed)	N
1112	chr17	69108752	69108753	rs1859962	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q24.3	NR	rs1859962-G	0.48	8E-9	(European)	1.13	[1.09-1.18]	Affymetrix [up to 19977088] (imputed)	N
1112	chr17	69108752	69108753	rs1859962	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	17q24.3	NR	rs1859962-G	0.48	2E-9		1.13	[1.08-1.17]	Affymetrix [up to 19977088] (imputed)	N
1112	chr17	69108752	69108753	rs1859962	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	17q24.3	intergenic	rs1859962-G	NR	3E-11		1.27	[1.18-1.37]	Illumina [571243]	N
1112	chr17	69108752	69108753	rs1859962	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	17q24.3	NR	rs1859962-?	NR	2E-16				Illumina [541129]	N
1112	chr17	69108752	69108753	rs1859962	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	17q24.3	intergenic	rs1859962-G	0.46	1E-6		1.26	[NR]	Illumina [541129]	N
1112	chr17	69108752	69108753	rs1859962	17603485	Gudmundsson J	2007-07-01	Nat Genet	Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.	Prostate cancer	1,501 European ancestry cases, 11,290 European ancestry controls	1,992 European ancestry cases, 3,058 European ancestry controls	17q24.3	intergenic	rs1859962-G	0.46	3E-10		1.2	[1.14-1.27]	Illumina [310520]	N
1112	chr17	69110922	69110923	rs7217073	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	17q24.3		rs7217073-A	NR	5E-25		1.1612	NR	Affymetrix [7846216] (imputed)	N
1112	chr17	69111097	69111098	rs9674957	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	17q24.3	NR	rs9674957-A	0.3645	5E-6		0.1466	[0.084-0.209] unit decrease	Illumina [10677593] (imputed)	N
1112	chr17	69112232	69112233	rs8077906	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	17q24.3	CASC17	rs8077906-A	0.38	3E-11	(pronasale-left endocanthion distance)	0.093	NR unit decrease	Illumina [7029494] (imputed)	N
1112	chr17	69115357	69115358	rs9911515	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q24.3		rs9911515-A	NR	1E-20		1.144	[1.112-1.177]	Affymetrix [7846216] (imputed)	N
1112	chr17	69117532	69117532	rs148511027	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	17q24.3	NR	rs148511027-G	0.459755254	4E-20		1.1691511	[1.13-1.21]	Affymetrix, Illumina [20400945] (imputed)	N
1112	chr17	69117532	69117532	rs148511027	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	17q24.3	NR	rs148511027-G	NR	1E-105		1.163	[1.15-1.18]	Affymetrix, Illumina [29235255] (imputed)	N
1112	chr17	69118635	69118636	rs4793529	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	17q24.3	CASC17	rs4793529-G	0.53	2E-8		0.8	[0.74-0.87] unit decrease	Illumina [185478]	N
1112	chr17	69118635	69118636	rs4793529	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	17q24.3	SOX9, CALM2P1	rs4793529-T		2E-13		0.28	[0.20-0.35] unit increase	Illumina [514432] (imputed)	N
1112	chr17	69119289	69119290	rs6501436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q24.3		rs6501436-A	NR	1E-18		0.1081	[0.084-0.132] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1112	chr17	69120159	69120160	rs6501438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q24.3		rs6501438-A	0.45	4E-18		8.68	z score increase	Affymetrix [9061022] (imputed)	N
1112	chr17	69120694	69120695	rs8074361	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q24.3	NR	rs8074361-G	0.4109	1E-17				NR [9056863] (imputed)	N
1112	chr17	69123105	69123106	rs56347314	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	17q24.3	KCNJ2, SOX9	rs56347314-?	NR	5E-12		1.108	[1.076-1.140]	Illumina [13537761] (imputed)	N
1112	chr17	69125605	69125606	rs11654749	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	17q24.3	SOX9, KCNJ2	rs11654749-T	0.39	7E-8	(FEV1, Pack-years)	0.0	[-0.00008-0.00018] unit increase	NR [~ 2500000] (imputed)	N
1112	chr17	69125605	69125606	rs11654749	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	17q24.3	SOX9, KCNJ2	rs11654749-T	0.39	1E-8	(FEV1, Ever-smoking)	0.017	[-0.00848-0.04248] unit decrease	NR [~ 2500000] (imputed)	N
1112	chr17	69127019	69127020	rs8074021	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q24.3		rs8074021-C	0.45	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
1112	chr17	69127019	69127020	rs8074021	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q24.3	NR	rs8074021-C	0.4181	1E-10				NR [9056863] (imputed)	N
1112	chr17	69129831	69129832	rs11653132	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose size)	6,169 Latin American individuals	NA	17q24.3		rs11653132-?	NR	4E-12				Illumina [8703729] (imputed)	N
1112	chr17	69129831	69129832	rs11653132	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 3)	6,169 Latin American individuals	NA	17q24.3		rs11653132-?	NR	2E6				Illumina [8703729] (imputed)	N
1112	chr17	69129831	69129832	rs11653132	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	17q24.3		rs11653132-?	NR	2E-10				Illumina [8703729] (imputed)	N
1112	chr17	69129831	69129832	rs11653132	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose protrusion)	6,169 Latin American individuals	NA	17q24.3		rs11653132-?	NR	1E-7				Illumina [8703729] (imputed)	N
1112	chr17	69129831	69129832	rs11653132	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	17q24.3		rs11653132-?	NR	3E-8				Illumina [8703729] (imputed)	N
1112	chr17	69131960	69131960	rs60743985	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	17q24.3		rs60743985-?	NR	9E-20				NR [9705931] (imputed)	N
1112	chr17	69133306	69133307	rs4793531	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	17q24.3	CASC17	rs4793531-T	0.41	4E-10	(right endocanthion-pronasale distance)	0.092	NR unit decrease	Illumina [7029494] (imputed)	N
1112	chr17	69137947	69137948	rs9908442	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	17q24.3		rs9908442-A	0.370924817	3E-46				Illumina [7417619] (imputed)	N
1112	chr17	69142627	69142628	rs9915190	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	17q24.3	NR	rs9915190-?	NR	1E-12	(Quadrant II (Nose), Segment 40)	0.043367036	NR unit decrease	NR [7417619] (imputed)	N
1112	chr17	69142627	69142628	rs9915190	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs9915190-A	0.45	4E-7	(Profile nasal angle)	0.004	[0.002-0.006] unit increase	Affymetrix [311944]	N
1112	chr17	69142627	69142628	rs9915190	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs9915190-A	0.45	2E-9	(Profile nasal area)	0.016	[0.01-0.022] unit decrease	Affymetrix [311944]	N
1112	chr17	69142627	69142628	rs9915190	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs9915190-A	0.45	2E-9	(Nasal tip protrusion)	0.016	[0.01-0.022] unit decrease	Affymetrix [311944]	N
1112	chr17	69149909	69149910	rs719615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q24.3		rs719615-?	NR	9E-27				NR [~ 8900000] (imputed)	N
1112	chr17	69165749	69165750	rs68181052	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q24.3		rs68181052-T	0.45	8E-36		12.49	z score increase	Affymetrix [9061022] (imputed)	N
1112	chr17	69180461	69180462	rs11871129	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	KCNJ2	rs11871129-?	NR	6E-6	(glycodeoxycholate)	0.8461254	[0.48-1.21] unit increase	Affymetrix [at least 2500000] (imputed)	N
1112	chr17	69201810	69201811	rs6501455	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q24.3	CASC17	rs6501455-A	0.5015	2E-47		0.0364	[0.032-0.041] unit increase	Affymetrix [19819130] (imputed)	N
1112	chr17	69201810	69201811	rs6501455	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs6501455-A	0.5015	7E-19		0.0209	[0.016-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1112	chr17	69201810	69201811	rs6501455	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs6501455-A	0.5015	6E-18		0.0206	[0.016-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1112	chr17	69201810	69201811	rs6501455	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs6501455-A	0.5015	1E-36		0.0296	[0.025-0.034] unit increase	Affymetrix [19819130] (imputed)	N
1113	chr17	69206118	69206119	rs56320441	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	CASC17	rs56320441-T	0.912779	2E-15		0.0262103	[0.02-0.033] unit decrease	NR [13737936] (imputed)	N
1113	chr17	69206118	69206119	rs56320441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.3		rs56320441-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1113	chr17	69206118	69206119	rs56320441	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.3		rs56320441-?	NR	6E-15		0.0279397	[0.021-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1113	chr17	69216686	69216687	rs11655567	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q24.3	SOX9	rs11655567-C	0.49	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1113	chr17	69224653	69224654	rs737958	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	17q24.3		rs737958-?	NR	3E-11		1.12224	[1.09-1.16]	NR [680312]	N
1113	chr17	69232147	69232148	rs9909320	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q24.3	intergenic	rs9909320-T	0.4422	2E-16		0.0156	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1113	chr17	69236204	69236205	rs17765886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.3		rs17765886-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1113	chr17	69236997	69236998	rs12946942	24023777	Miyake A	2013-09-04	PLoS One	Identification of a susceptibility locus for severe adolescent idiopathic scoliosis on chromosome 17q24.3.	Adolescent idiopathic scoliosis (severe)	554 Japanese ancestry cases, 1,474 Japanese ancestry controls	839 East Asian ancestry cases, 10,149 East Asian ancestry controls	17q24.3	SOX9, KCNJ2	rs12946942-T	0.213	6E-12		2.21	[1.76-2.77]	Illumina [455121]	N
1113	chr17	69239120	69239121	rs9916542	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	17q24.3	CASC17	rs9916542-A	NR	5E-8	(pronasale-left endocanthion distance)	0.095	NR unit increase	Illumina [7029494] (imputed)	N
1113	chr17	69281765	69281766	rs11871847	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Schizophrenia (inflammation and infection response interaction)	460 Ashkenazi Jewish schizophrenia cases, 241  Ashkenazi Jewish controls	NA	17q24.3	CASC17	rs11871847-?		6E-6	(anti-CMV)			Affymetrix [516638]	N
1113	chr17	69307998	69307999	rs7220854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs7220854-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1113	chr17	69311952	69311953	rs7223448	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q24.3	RNU6-305P	rs7223448-T	NR	7E-9		0.0172091	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1113	chr17	69311952	69311953	rs7223448	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs7223448-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1113	chr17	69311952	69311953	rs7223448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q24.3		rs7223448-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1114	chr17	69342362	69342363	rs8080236	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	17q24.3	CASC17, LOC102723505	rs8080236-C	0.35	6E-6		0.207	[0.12-0.3] unit increase	Illumina [6379332] (imputed)	N
1114	chr17	69346740	69346741	rs79216873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.3		rs79216873-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1114	chr17	69357504	69357505	rs9901257	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	CASC17	rs9901257-G	0.576825	5E-10		0.0117312	[0.008-0.0154] unit increase	NR [13737936] (imputed)	N
1114	chr17	69368410	69368411	rs9904181	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q24.3	SOX9	rs9904181-T	0.08	2E-6	(conditional on rs11655567)	1.09	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1114	chr17	69371317	69371318	rs996865	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q24.3	CASC17	rs996865-T	0.0753	3E-35		0.0591	[0.05-0.069] unit decrease	Affymetrix [19819130] (imputed)	N
1114	chr17	69371317	69371318	rs996865	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs996865-T	0.0753	2E-25		0.0475	[0.038-0.057] unit decrease	Affymetrix [19819130] (imputed)	N
1114	chr17	69371317	69371318	rs996865	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q24.3	CASC17	rs996865-T	0.0753	3E-6		0.021	[0.012-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1114	chr17	69371317	69371318	rs996865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.3		rs996865-?	NR	1E-33				NR [~ 8900000] (imputed)	N
1114	chr17	69387908	69387909	rs4793259	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	17q24.3	Intergenic	rs4793259-?	NR	4E-6		1.6920472	[NR]	Affymetrix [492217] (imputed)	N
1114	chr17	69392322	69392323	rs9900761	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q24.3	NR	rs9900761-?	NR	5E-10				Affymetrix [NR]	N
1114	chr17	69409328	69409329	rs2159042	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2159042-C	0.48	4E-7	(Nasal bridge depth)	0.277	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69409328	69409329	rs2159042	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2159042-C	0.48	3E-11	(Profile nasal area)	0.019	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69409328	69409329	rs2159042	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2159042-C	0.48	2E-11	(Profile nasal angle)	0.006	[NR] unit decrease	Affymetrix [311944]	N
1114	chr17	69409328	69409329	rs2159042	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2159042-C	0.48	1E-9	(Nasal tip protrusion)	0.017	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69419930	69419931	rs2024070	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2024070-C	0.48	8E-10	(Nasal tip protrusion)	0.018	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69419930	69419931	rs2024070	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2024070-C	0.48	5E-11	(Profile nasal area)	0.019	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69419930	69419931	rs2024070	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2024070-C	0.48	3E-11	(Profile nasal angle)	0.006	[NR] unit decrease	Affymetrix [311944]	N
1114	chr17	69419930	69419931	rs2024070	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	CASC17, SOX9	rs2024070-C	0.48	1E-6	(Nasal bridge depth)	0.268	[NR] unit increase	Affymetrix [311944]	N
1114	chr17	69429142	69429143	rs1859979	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs1859979-C	0.46	7E-12	(Profile nasal area)	0.018	[0.012-0.024] unit increase	Affymetrix [311944]	N
1114	chr17	69429142	69429143	rs1859979	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs1859979-C	0.46	2E-7	(Nasal bridge depth)	0.272	[0.17-0.37] unit increase	Affymetrix [311944]	N
1114	chr17	69429142	69429143	rs1859979	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs1859979-C	0.46	2E-10	(Nasal tip protrusion)	0.017	[0.011-0.023] unit increase	Affymetrix [311944]	N
1114	chr17	69429142	69429143	rs1859979	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs1859979-C	0.46	1E-14	(Profile nasal angle)	0.007	[0.005-0.009] unit decrease	Affymetrix [311944]	N
1114	chr17	69429142	69429143	rs1859979	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs1859979-C	0.46	1E-10	(Nasolabial angle)	0.013	[0.0091-0.0169] unit decrease	Affymetrix [311944]	N
1114	chr17	69436508	69436509	rs11651604	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with less than 10 gray radiotherapy	69 European ancestry cases, 2,144 European ancestry controls	NA	17q24.3	CASC17	rs11651604-C	0.16	6E-7		2.12	[1.50-3.01]	Affymetrix, Illumina [16958466] (imputed)	N
1115	chr17	69490072	69490073	rs9907236	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	17q24.3	SOX9	rs9907236-A	0.06	2E-6	(AA)	0.51	[0.29-0.73] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1115	chr17	69497227	69497228	rs16976699	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.3	NR	rs16976699-T	0.05052	2E-8	(LPCAT3)	0.004237	NR unit increase	Illumina [1671387] (imputed)	N
1115	chr17	69517181	69517181	rs199953778	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	17q24.3	NR	rs199953778-?	NR	6E-8		0.0579	[0.037-0.079] unit increase	Illumina [at least 560000] (imputed)	N
1116	chr17	69622493	69622494	rs66470941	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	LOC102723505	rs66470941-A	0.886835	2E-10		0.018698	[0.013-0.024] unit increase	NR [13737936] (imputed)	N
1116	chr17	69676168	69676169	rs2430514	33613413	Park KW	2021-02-04	Front Neurol	Genomic Association Study for Cognitive Impairment in Parkinson's Disease.	cognitive impairment (MoCA score) in Parkinson's disease	222 Korean ancestry MoCA score <24 individuals, 272 Korean ancestry MoCA score >=24 individuals	NA	17q24.3	CASC17	rs2430514-?		8E-6		2.03	[1.49-2.77]	NR [523758]	N
1116	chr17	69721923	69721924	rs2429929	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	17q24.3		rs2429929-?	NR	8E-6	(MLM)	0.6971282	[0.39-1] unit increase	Illumina [~ 9000000] (imputed)	N
1116	chr17	69722204	69722205	rs2429928	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	17q24.3		rs2429928-?	NR	4E-6	(MLM)	0.7148641	[0.41-1.02] unit increase	Illumina [~ 9000000] (imputed)	N
1116	chr17	69729924	69729925	rs74976893	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	17q24.3	NR	rs74976893-T	NR	4E-6	(phenotype 1)	4.18	[NR]	Illumina [> 8000000] (imputed)	N
1116	chr17	69729924	69729925	rs74976893	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	17q24.3	NR	rs74976893-T	NR	4E-6	(phenotype 3)	4.18	[NR]	Illumina [> 8000000] (imputed)	N
1117	chr17	69761368	69761369	rs35473710	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	17q24.3	SOX9	rs35473710-G	NR	4E-8	(right alare-left cheilion distance)	0.193	NR unit increase	Illumina [7029494] (imputed)	N
1117	chr17	69790006	69790007	rs12948940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.3		rs12948940-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1117	chr17	69845899	69845900	rs16976954	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	LOC102723505	rs16976954-T	0.549963	5E-11		0.0132113	[0.0093-0.0172] unit increase	NR [13737936] (imputed)	N
1118	chr17	69862974	69862975	rs12942736	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q24.3	LOC102723505	rs12942736-C	0.767102	2E-16		0.0196671	[0.015-0.024] unit increase	NR [13737936] (imputed)	N
1118	chr17	69898214	69898215	rs8069036	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q24.3		rs8069036-?	NR	6E-26		0.0218591	[0.018-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1118	chr17	69898214	69898215	rs8069036	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.3	LOC102723505	rs8069036-T	0.568183	9E-8	(women)	0.0244417	[0.015-0.034] unit decrease	NR [17166351] (imputed)	N
1118	chr17	69898214	69898215	rs8069036	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.3	LOC102723505	rs8069036-T	0.567203	2E-11		0.0228433	[0.016-0.03] unit decrease	NR [17166351] (imputed)	N
1118	chr17	69898214	69898215	rs8069036	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q24.3	LOC102723505	rs8069036-T	0.566081	8E-6	(men)	0.0230868	[0.013-0.033] unit decrease	NR [17166351] (imputed)	N
1118	chr17	69923113	69923114	rs59554899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs59554899-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1118	chr17	69927591	69927592	rs4387633	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	17q24.3	AC005152.3	rs4387633-G	NR	3E-8		0.0172138	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
1118	chr17	69927848	69927849	rs9908473	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs9908473-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1118	chr17	69931721	69931722	rs16977018	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q24.3	RP11-465C12.1	rs16977018-T	0.7363	9E-6		0.0321	[0.018-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1118	chr17	69935057	69935058	rs111299584	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	17q24.3	SOX9, SOX9-AS1	rs111299584-A	0.1007	4E-6		1.715	[0.99-2.44] unit increase	Illumina [3515000] (imputed)	N
1118	chr17	69944525	69944526	rs113724004	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	17q24.3	Intergenic	rs113724004-T		8E-7	(men)	0.123	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1118	chr17	69944957	69944958	rs12944813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q24.3		rs12944813-A	NR	4E-25		0.0191	[0.016-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1118	chr17	69948042	69948043	rs55888531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q24.3		rs55888531-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1118	chr17	69949015	69949016	rs7217932	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q24.3	SOX9	rs7217932-A	0.46	2E-11		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1118	chr17	69957259	69957260	rs17767678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs17767678-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1118	chr17	69958341	69958342	rs1159421	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	17q24.3	SOX9	rs1159421-T	0.447	5E-15		0.065	[0.049-0.082] unit decrease	Illumina [33400000] (imputed)	N
1118	chr17	69958341	69958342	rs1159421	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	17q24.3	SOX9	rs1159421-T	0.44675	2E-6		0.037	NR unit decrease	Illumina [33400000] (imputed)	N
1118	chr17	69971945	69971946	rs143374074	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	17q24.3	NR	rs143374074-G	0.04638	1E-6		1.226	[0.76-1.69] unit increase	Illumina [at least 567677] (imputed)	N
1119	chr17	69992846	69992847	rs4793393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q24.3		rs4793393-C	0.060425	7E-11		0.0275348	[0.019-0.036] unit increase	Illumina [13479295] (imputed)	N
1119	chr17	69992846	69992847	rs4793393	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q24.3	CASC17, LOC102723505	rs4793393-?	NR	3E-13		0.043486778	[0.032-0.055] unit increase	Illumina [27896057] (imputed)	N
1119	chr17	70000683	70000684	rs2158915	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	17q24.3	Intergenic	rs2158915-G	0.35	8E-27	(hip shape mode 1)	0.13	[0.11-0.15] unit decrease	Illumina [7191926] (imputed)	N
1119	chr17	70002329	70002330	rs116878242	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q24.3	AC005152.3	rs116878242-A	0.0712	4E-8		0.0688	[0.044-0.093] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1119	chr17	70003314	70003315	rs12601029	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	17q24.3	SOX9	rs12601029-A	0.335	6E-18		0.072	[0.056-0.089] unit increase	Illumina [33400000] (imputed)	N
1119	chr17	70003314	70003315	rs12601029	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	17q24.3	SOX9	rs12601029-A	0.33505	3E-8		0.043	NR unit increase	Illumina [33400000] (imputed)	N
1119	chr17	70004199	70004200	rs2160442	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	17q24.3	Intergenic	rs2160442-A	0.35	5E-14	(hip shape mode 5)	0.092	[0.068-0.116] unit decrease	Illumina [7191926] (imputed)	N
1119	chr17	70009977	70009978	rs11077592	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q24.3	AC005152.3	rs11077592-A	NR	1E-10		0.0209376	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1119	chr17	70011418	70011419	rs12150290	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q24.3		rs12150290-C	0.21	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1119	chr17	70012938	70012939	rs8067763	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	17q24.3	NR	rs8067763-G	0.41	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1119	chr17	70021322	70021323	rs117780636	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ROCR	rs117780636-?	NR	1E-8		4.03577	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1119	chr17	70025586	70025587	rs34091987	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	17q24.3	SOX9	rs34091987-?	NR	3E-8		0.025	[0.016-0.034] unit increase	Illumina [12039491] (imputed)	N
1119	chr17	70025808	70025809	rs2193054	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2193054-C	0.47	6E-17	(Profile nasal angle)	0.007	[0.0050-0.0090] unit decrease	Affymetrix [311944]	N
1119	chr17	70025808	70025809	rs2193054	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2193054-C	0.47	5E-9	(Nasolabial angle)	0.012	[NR] unit decrease	Affymetrix [311944]	N
1119	chr17	70025808	70025809	rs2193054	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2193054-C	0.47	5E-9	(Nasal tip protrusion)	0.017	[0.011-0.023] unit increase	Affymetrix [311944]	N
1119	chr17	70028444	70028445	rs2241173	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	17q24.3		rs2241173-G	0.576201	2E-11		0.0023795	[0.0017-0.0031] unit decrease	Affymetrix [10829469] (imputed)	N
1119	chr17	70028444	70028445	rs2241173	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	17q24.3	NR	rs2241173-G	0.58	2E-10		0.095	[0.066-0.124] unit decrease	Affymetrix [10972371] (imputed)	N
1119	chr17	70028837	70028838	rs9807105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q24.3		rs9807105-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1119	chr17	70032966	70032967	rs8079939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	17q24.3		rs8079939-T	NR	6E-16		0.0863	[0.065-0.107] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1119	chr17	70034188	70034189	rs9302943	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 44)	4,680 European ancestry individuals	3,566 European ancestry individuals	17q24.3		rs9302943-A	0.444420415	1E-46				Illumina [7417619] (imputed)	N
1119	chr17	70036557	70036558	rs759493	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	17q24.3	NR	rs759493-?	NR	1E-8	(Quadrant II (Nose), Segment 47)	0.030776966	NR unit increase	NR [7417619] (imputed)	N
1119	chr17	70040546	70040547	rs2058742	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2058742-T	0.28	8E-14	(Profile nasal angle)	0.007	[NR] unit increase	Affymetrix [311944]	N
1119	chr17	70040546	70040547	rs2058742	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2058742-T	0.28	4E-8	(Nasolabial angle)	0.013	[NR] unit increase	Affymetrix [311944]	N
1119	chr17	70040546	70040547	rs2058742	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2058742-T	0.28	2E-10	(Nasal tip protrusion)	0.02	[NR] unit decrease	Affymetrix [311944]	N
1119	chr17	70040546	70040547	rs2058742	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	17q24.3	SOX9	rs2058742-T	0.28	1E-6	(Profile nasal area)	0.015	[NR] unit decrease	Affymetrix [311944]	N
1119	chr17	70044907	70044907	rs67037648	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	17q24.3	SOX9-AS1	rs67037648-A	0.7061	6E-6		0.0319	[0.018-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1119	chr17	70046188	70046189	rs12952286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q24.3		rs12952286-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1119	chr17	70050273	70050274	rs4793271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs4793271-T	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1119	chr17	70065899	70065900	rs9912994	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFA5	5,367 Icelandic ancestry individuals	NA	17q24.3		rs9912994-T	0.1331	1E-20		0.251243	[0.2-0.3] unit increase	Illumina [7506463] (imputed)	N
1119	chr17	70070988	70070989	rs2241170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q24.3		rs2241170-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1119	chr17	70074147	70074148	rs9913936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q24.3		rs9913936-C	NR	4E-32		0.0238	[0.02-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1119	chr17	70074147	70074148	rs9913936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q24.3		rs9913936-C	NR	6E-13		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1119	chr17	70074147	70074148	rs9913936	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	17q24.3	SOX9-AS1	rs9913936-T	0.330293	2E-15		0.00330506	[0.0025-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
1119	chr17	70097850	70097851	rs140991990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q24.3	SOX9	rs140991990-?		7E-8		1.16	[1.10-1.23]	Illumina [7645193] (imputed)	N
1119	chr17	70097850	70097851	rs140991990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q24.3	Intergenic	rs140991990-?		7E-8		1.16	[1.10-1.23]	Illumina [7645193] (imputed)	N
1119	chr17	70097850	70097851	rs140991990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q24.3	SOX9	rs140991990-?		3E-8		4.94	[2.80-8.71]	Illumina [7645193] (imputed)	N
1119	chr17	70097850	70097851	rs140991990	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	17q24.3	Intergenic	rs140991990-?		3E-8		4.94	[2.80-8.71]	Illumina [7645193] (imputed)	N
1119	chr17	70098160	70098161	rs9913711	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	17q24.3	FLJ37644, SOX9	rs9913711-C	0.65	1E-9		2.4	[1.80-3.00] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1119	chr17	70106427	70106428	rs1477066	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q24.3	KCNJ2, SOX9	rs1477066-C	0.67	1E-12		7.13	z-score increase	Affymetrix [4312306] (imputed)	N
1119	chr17	70122107	70122108	rs1042678	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q24.3	SOX9	rs1042678-A	0.444947169924506	2E-26		0.0487	[0.04-0.058] SD increase	Illumina [22400000] (imputed)	N
1120	chr17	70127535	70127536	rs9915657	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	17q24.3	SOX9	rs9915657-T	0.541	8E-13	(TSH)	0.064	[0.046-0.082] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1120	chr17	70127535	70127536	rs9915657	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	17q24.3	SOX9	rs9915657-T	0.541	2E-7	(TSH - Males)	0.068	[0.043-0.093] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1120	chr17	70127535	70127536	rs9915657	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	17q24.3	SOX9	rs9915657-T	0.541	1E-7	(TSH - Females)	0.063	[0.039-0.087] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1120	chr17	70130891	70130892	rs918080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q24.3	NR	rs918080-G	NR	6E-12		0.0214	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1120	chr17	70156204	70156205	rs73358421	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q24.3	NR	rs73358421-C	0.05226	8E-9	(CCDC58)	0.007235	NR unit decrease	Illumina [1671387] (imputed)	N
1120	chr17	70217165	70217166	rs9897443	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	17q24.3	LINC00673	rs9897443-?	0.616646	9E-6		1.2877936	[1.15-1.44]	Affymetrix, Illumina [NR] (imputed)	N
1121	chr17	70291251	70291252	rs1473136	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	17q24.3	NR	rs1473136-?		7E-6		2.04	[1.49-2.79]	Illumina [539473] (imputed)	N
1121	chr17	70295727	70295728	rs7211132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q24.3	NR	rs7211132-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1121	chr17	70295727	70295728	rs7211132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q24.3	NR	rs7211132-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1121	chr17	70295727	70295728	rs7211132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q24.3		rs7211132-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1121	chr17	70299957	70299958	rs17181550	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	17q24.3	SOX9, LINC00673	rs17181550-T	0.573498725	2E-7		1.0639783	[1.04-1.09]	Illumina [10439017] (imputed)	N
1121	chr17	70299957	70299958	rs17181550	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	17q24.3	SOX9, LINC00673	rs17181550-T	0.573729560999999	3E-6		1.0797197	[1.05-1.12]	Illumina [10439017] (imputed)	N
1121	chr17	70338126	70338127	rs7217268	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	17q24.3	LOC100499467	rs7217268-A	0.38	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1121	chr17	70338126	70338127	rs7217268	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	17q24.3	LOC100499467	rs7217268-A	0.38	2E-9		0.0346	[0.023-0.046] unit increase	Affymetrix [at least 8900000] (imputed)	N
1121	chr17	70349021	70349022	rs56008432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	17q24.3		rs56008432-C	NR	3E-10		0.0745	[0.051-0.098] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1121	chr17	70352536	70352537	rs4793434	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	17q24.3	SOX9	rs4793434-G	0.5	5E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 5000000] (imputed)	N
1121	chr17	70352536	70352537	rs4793434	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	17q24.3	SOX9	rs4793434-G	0.50	2E-6		1.09	[1.05-1.13]	Affymetrix [~ 8400000] (imputed)	N
1121	chr17	70359773	70359774	rs61457372	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	17q24.3	intergenic	rs61457372-?	NR	9E-6		0.56	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1121	chr17	70363394	70363395	rs12941150	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	17q24.3	SOX9	rs12941150-?	NR	7E-6	(FEV1/FVC decline in asthmatics)	0.2239	[0.13-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
1121	chr17	70376176	70376177	rs8077245	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hyperthyroidism	1,840 European ancestry cases, 49,983 European ancestry controls	NA	17q24.3	SOX9	rs8077245-T	0.58	5E-10		0.205	[0.14-0.27] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
1121	chr17	70380849	70380850	rs12942923	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q24.3	LINC02003, LINC00673	rs12942923-A	0.527627558691226	6E-21		0.0429	[0.034-0.052] SD decrease	Illumina [22400000] (imputed)	N
1121	chr17	70383352	70383353	rs148295121	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	17q24.3	LINC00673	rs148295121-?	NR	8E-6				Illumina [2668805]	N
1122	chr17	70400165	70400166	rs11655237	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	17q24.3	LINC00673	rs11655237-T	0.11	1E-14		1.26	[1.19-1.34]	Illumina [866891] (imputed)	N
1122	chr17	70401475	70401476	rs7214041	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	17q24.3	LINC00673	rs7214041-T	0.11	9E-15		1.25	[1.19-1.30]	Illumina [11381182] (imputed)	N
1122	chr17	70403689	70403690	rs141389156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q24.3		rs141389156-G	NR	1E-8		0.0859	[0.057-0.115] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1122	chr17	70405094	70405095	rs11652463	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	17q24.3	NR	rs11652463-C	0.69	4E-8		1.0416667	[1.03-1.05]	Illumina [~ 10800000] (imputed)	N
1122	chr17	70405094	70405095	rs11652463	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q24.3	NR	rs11652463-G	0.3083	8E-8	(EA)	0.04	[0.025-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
1122	chr17	70413252	70413253	rs983318	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17q24.3	NR	rs983318-A	0.2451	6E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1122	chr17	70424644	70424645	rs2302740	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	17q24.3	NR	rs2302740-?	NR	7E-6		0.051914547	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1122	chr17	70466991	70466992	rs34282937	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	17q24.3	NR	rs34282937-?		5E-6		2.74	[NR]	Illumina [NR] (imputed)	N
1123	chr17	70584264	70584265	rs718073	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	17q24.3	LOC100499467, SLC39A11, LINC00511	rs718073-?	0.84	5E-6		0.35	[0.20-0.50] unit increase	Illumina [2095209]	N
1123	chr17	70594628	70594629	rs11077614	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	17q24.3	SLC39A11	rs11077614-G	0.49	3E-6	(EA-glucose response)	3.25	[1.92-4.58] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1123	chr17	70641697	70641698	rs7210086	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	17q24.3	intergenic	rs7210086-A	0.797	2E-9		1.111	[1.062-1.163]	Affymetrix, Illumina [1230000] (imputed)	N
1123	chr17	70642922	70642923	rs17780256	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	17q24.3	SLC39A11	rs17780256-?		4E-10				Illumina [9578670] (imputed)	N
1123	chr17	70642922	70642923	rs17780256	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	17q24.3	SLC39A11	rs17780256-?		4E-11				Illumina [9725440] (imputed)	N
1123	chr17	70642922	70642923	rs17780256	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	17q24.3	SLC39A11	rs17780256-?	NR	6E-11	(subset analysis)			Illumina [130052]	N
1123	chr17	70642922	70642923	rs17780256	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q24.3	NR	rs17780256-A	0.81	6E-13	(EA)	1.1223103		Affymetrix, Illumina [~ 9000000] (imputed)	N
1123	chr17	70642922	70642923	rs17780256	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q24.3	NR	rs17780256-A	0.81	3E-11	(EA)	1.0870057		Affymetrix, Illumina [~ 9000000] (imputed)	N
1123	chr17	70645031	70645032	rs61736066	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q24.3	NR	rs61736066-G	0.9165	2E-9		0.0506	[0.034-0.067] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1123	chr17	70645031	70645032	rs61736066	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q24.3	NR	rs61736066-G	0.881	5E-11		0.0421	[0.03-0.055] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1123	chr17	70645445	70645446	rs3924958	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	17q24.3	SLC39A11	rs3924958-?	NR	4E-6				Illumina [7401356] (imputed)	N
1124	chr17	70696102	70696103	rs8066857	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	17q24.3	SLC39A11	rs8066857-C	NR	8E-6	(site of onset)	1.48	[NR]	Illumina [288357]	N
1124	chr17	70713538	70713539	rs891684	23698163	Gong J	2013-05-21	Nutrients	Genome-wide association study of serum selenium concentrations.	Serum selenium levels	582 European ancestry individuals	621 European ancestry individuals	17q24.3	SLC39A11	rs891684-A	0.05	4E-7		0.093	[0.058-0.128] mg/dL decrease	Illumina [2474333]	N
1124	chr17	70721706	70721707	rs8071840	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q24.3		rs8071840-G	0.48	6E-9				NR [NR] (imputed)	N
1124	chr17	70721706	70721707	rs8071840	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q24.3		rs8071840-G	0.48	2E-8		0.008	% increase	NR [NR] (imputed)	N
1124	chr17	70755592	70755593	rs2713974	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	17q24.3	SLC39A11	rs2713974-C	NR	2E-7		0.511	[0.32-0.7] unit decrease	Illumina [7410776] (imputed)	N
1124	chr17	70774108	70774109	rs9894443	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	17q24.3	SLC39A11	rs9894443-?	0.42	8E-6	(male)	1.45	[1.23-1.70]	Illumina [5595657] (imputed)	N
1125	chr17	70779764	70779765	rs2567524	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	SSTR2	rs2567524-?	NR	5E-6	(TAG 58:9)	0.15374267	[0.088-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1125	chr17	70783317	70783318	rs4793310	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q24.3	SSTR2	rs4793310-?	NR	8E-7	(TAG 58:10)	0.1746723	[0.11-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1125	chr17	70788405	70788406	rs2567519	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	17q24.3	SLC39A11	rs2567519-?		1E-7	(males)			Illumina [1211988] (imputed)	N
1125	chr17	70826403	70826404	rs12943829	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	17q24.3	SLC39A11	rs12943829-C	0.01	2E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1126	chr17	70912338	70912339	rs12103754	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q25.1	NR	rs12103754-?	NR	1E-7		0.0092892	[0.0058-0.0127] unit increase	Affymetrix [805426] (imputed)	N
1126	chr17	70952375	70952376	rs28677989	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	17q25.1	SLC39A11	rs28677989-?	NR	3E-6		2.6		Illumina [6778521] (imputed)	N
1126	chr17	70980126	70980127	rs4969001	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	17q25.1	SLC39A11	rs4969001-T	0.86	7E-6		1.32	[1.17-1.49]	Affymetrix, Illumina [3378933] (imputed)	N
1126	chr17	71000939	71000940	rs4969049	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	17q25.1	SLC39A11	rs4969049-C	0.17	1E-6	(Hispanic, ever vs never smoking)	0.004	[.002-0.01] unit increase	Affymetrix [706791]	N
1126	chr17	71005193	71005194	rs7225039	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	17q25.1		rs7225039-C	0.516224	9E-6		0.0121639	[0.0067-0.0176] unit decrease	Illumina [13900000] (imputed)	N
1127	chr17	71061933	71061934	rs903107	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	17q25.1	SLC39A11	rs903107-G	0.052	6E-6		0.104	[0.059-0.149] unit increase	Illumina [747076]	N
1127	chr17	71080760	71080761	rs77702743	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900066135 sp900066135 abundance in stool	5,959 Finnish ancestry individuals	NA	17q25.1		rs77702743-G	0.0616617	2E-8		0.0767488	[0.05-0.104] unit increase	Illumina [7980478] (imputed)	N
1127	chr17	71111630	71111631	rs60350499	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to sodium channel-Active anticonvulsant in focal epilepsy	910 European ancestry cases, 1,286 European ancestry controls	NA			rs60350499-?	NR	7E-8				Illumina [NR] (imputed)	N
1127	chr17	71111630	71111631	rs60350499	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA		SLC39A11, SSTR2	rs60350499-?	NR	3E-6	(Hispanic/Latino)			NR [at least 880000]	N
1127	chr17	71123677	71123678	rs35725740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q25.1		rs35725740-A	NR	2E-16		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1127	chr17	71124902	71124903	rs6501601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q25.1		rs6501601-A	NR	3E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1127	chr17	71124902	71124903	rs6501601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q25.1	POLR3KP2	rs6501601-A	NR	2E-8		0.0175866	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1127	chr17	71158121	71158122	rs2017811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q25.1		rs2017811-T	NR	1E-11		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1127	chr17	71158121	71158122	rs2017811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.1		rs2017811-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1128	chr17	71176524	71176525	rs75926215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q25.1	RP11-143K11.5	rs75926215-A	0.3487	5E-10		0.02327572	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1128	chr17	71195948	71195949	rs1009110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.1		rs1009110-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1128	chr17	71202099	71202099	rs3214787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q25.1		rs3214787-CA	NR	2E-11		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1128	chr17	71207589	71207590	rs7212408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs7212408-A	0.621448	1E-15				Affymetrix, Illumina [24246363] (imputed)	N
1128	chr17	71207589	71207590	rs7212408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q25.1	NR	rs7212408-A	0.624871	4E-18		0.016287	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1128	chr17	71207589	71207590	rs7212408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.1	NR	rs7212408-A	0.625178	1E-15		0.015884	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1128	chr17	71208647	71208648	rs10717516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.1	FAM104A	rs10717516-G	0.627601	1E-19		0.020967687	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr17	71208647	71208648	rs10717516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.1	FAM104A	rs10717516-G	0.627695	2E-16		0.0175281	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr17	71208647	71208648	rs10717516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.1	FAM104A	rs10717516-G	0.62767	6E-15		0.017815376	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr17	71209396	71209396	rs397704751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q25.1		rs397704751-GA	NR	4E-11		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1128	chr17	71213118	71213119	rs8182271	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs8182271-G	0.619515	1E-12				Affymetrix, Illumina [20825802] (imputed)	N
1128	chr17	71214749	71214750	rs9901287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.1	FAM104A	rs9901287-A	0.596053	1E-17		0.019296793	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr17	71214749	71214750	rs9901287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs9901287-G	0.407076	4E-20				Affymetrix, Illumina [22063850] (imputed)	N
1128	chr17	71214749	71214750	rs9901287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.1	NR	rs9901287-G	0.403388	2E-23		0.019124	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1128	chr17	71214896	71214897	rs9906931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q25.1		rs9906931-A	NR	4E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1128	chr17	71215806	71215806	rs11439438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.1	FAM104A	rs11439438-GA	0.537491	3E-22		0.021866558	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr17	71217370	71217371	rs35673167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.1		rs35673167-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1128	chr17	71225990	71225994	rs35789607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.1	FAM104A	rs35789607-C	0.529985	2E-10		0.014160093	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr17	71227952	71227953	rs3764361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	FAM104A	rs3764361-G	0.537721	9E-11		0.014500901	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr17	71229350	71229351	rs1466118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.1	C17orf80	rs1466118-T	0.564009	6E-9		0.01308928	[0.0087-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr17	71253022	71253023	rs9900555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.1		rs9900555-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1128	chr17	71290982	71290983	rs112659862	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		17q25.1	NR	rs112659862-C	0.005	3E-6		3.62	[2.11-6.22]	Illumina [~ 8000000] (imputed)	N
1128	chr17	71296484	71296485	rs77108619	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q25.1	NR	rs77108619-?	NR	2E-7		6933.1567	NR unit decrease	Illumina [2379855]	N
1129	chr17	71334472	71334473	rs3195414	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	17q25.1	SDK2	rs3195414-A	0.1815	9E-6	(African)			Illumina [4404269] (imputed)	N
1129	chr17	71335259	71335260	rs3816995	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	17q25.1	SDK2	rs3816995-?	0.03	2E-7				Affymetrix [253903]	N
1129	chr17	71340431	71340432	rs904386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	17q25.1	NR	rs904386-?	NR	2E-6		0.1072	[0.063-0.151] unit decrease	Illumina [at least 560000] (imputed)	N
1129	chr17	71380061	71380062	rs35467001	33627384	Matejcic M	2021-02-24	Cancer Epidemiol Biomarkers Prev	Rare variants in the DNA repair pathway and the risk of colorectal cancer.	Colorectal cancer	2,327 European ancestry cases, 2,966 European ancestry  controls	NA	17q25.1	NR	rs35467001-?	NR	8E-6				Illumina [142390]	N
1129	chr17	71380061	71380062	rs35467001	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	17q25.1	SDK2	rs35467001-?		5E-7		0.87	[0.54-1.2] unit increase	Illumina [8426597] (imputed)	N
1129	chr17	71392601	71392601	rs780627592	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	17q25.1		rs780627592-ACCCACTTTAC	NR	4E-6		2.31637		Affymetrix, Illumina [62056310] (imputed)	N
1129	chr17	71424491	71424492	rs78834970	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q25.1	NR	rs78834970-?		5E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1130	chr17	71527242	71527243	rs9905921	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		17q25.1	LOC728073, RPL38	rs9905921-C	0.43	2E-6		1.26	[1.14-1.39]	Illumina [90536]	N
1130	chr17	71528079	71528080	rs1872085	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	17q25.1	SDK2	rs1872085-?	NR	2E-6	(Recessive model)	0.69	unit increase	Illumina [542562]	N
1131	chr17	71579735	71579736	rs790085	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q25.1		rs790085-C	0.36	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
1132	chr17	71702705	71702706	rs80126682	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	17q25.1	NR	rs80126682-?	NR	2E-6		1.4481	[0.71-2.18] unit increase	Illumina [at least 560000] (imputed)	N
1132	chr17	71713115	71713116	rs117172443	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q25.1	Intergenic	rs117172443-T	0.981	2E-6		0.041	unit decrease	Illumina [NR] (imputed)	N
1132	chr17	71714038	71714039	rs142849437	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q25.1	Intergenic	rs142849437-T	0.025	4E-6		0.033	unit increase	Illumina [NR] (imputed)	N
1132	chr17	71735484	71735485	rs899596	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	17q25.1	intergenic	rs899596-?		3E-6	(AIRg)	2.2	[1.32-3.08] unit increase	Illumina [693128]	N
1132	chr17	71754544	71754545	rs2619976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.1	NR	rs2619976-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1132	chr17	71754544	71754545	rs2619976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.1		rs2619976-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1132	chr17	71754544	71754545	rs2619976	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.1	NA	rs2619976-T	0.4011	2E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1132	chr17	71754544	71754545	rs2619976	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q25.1	NA	rs2619976-T	0.4011	2E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1132	chr17	71784374	71784375	rs116885154	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q25.1	NR	rs116885154-?	NR	4E-7		0.4672	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1132	chr17	71807712	71807713	rs12451840	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.1	NR	rs12451840-C	0.0417941590759076	3E-6	(IGP23)	0.7321	[0.42-1.04] unit increase	Illumina [~ 2500000] (imputed)	N
1133	chr17	71846562	71846563	rs12944194	30284222	Brcic L	2018-10-03	J Endocrinol Invest	Genome-wide association analysis suggests novel loci for Hashimoto's thyroiditis.	Hashimoto thyroiditis	405 Croatian ancestry cases, 433 Croatian ancestry controls	303 Croatian ancestry cases, 302 Croatian ancestry controls	17q25.1	SDK2	rs12944194-T	0.356	2E-6		0.088	[0.053-0.123] unit decrease	Illumina [8621046] (imputed)	N
1133	chr17	71886629	71886630	rs113936974	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q25.1	Intergenic	rs113936974-T	1.0	2E-6	(AA)	0.409	unit increase	Illumina [NR] (imputed)	N
1133	chr17	71895768	71895769	rs8078436	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17q25.1	LOC100134391	rs8078436-T	0.444	1E-9		0.0073	[0.0049-0.0097] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1133	chr17	71895768	71895769	rs8078436	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	17q25.1	LOC100134391	rs8078436-T	0.4463	3E-8		0.010823515	[0.007-0.0146] unit decrease	Illumina [9339358] (imputed)	N
1133	chr17	71943574	71943575	rs111926416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q25.1	Intergenic	rs111926416-A	0.999	1E-6	(AA)	0.33	unit increase	Illumina [NR] (imputed)	N
1134	chr17	71964905	71964906	rs1110195	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q25.1	NR	rs1110195-?	NR	3E-8				Illumina [7760689] (imputed)	N
1134	chr17	72031723	72031724	rs2198989	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q25.1	NR	rs2198989-?		5E-6				Illumina [4322238] (imputed)	N
1134	chr17	72042519	72042520	rs7206961	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	17q25.1	intergenic	rs7206961-?	NR	3E-6	(SCL)	0.058	[0.034-0.082] unit increase	Illumina [527829]	N
1134	chr17	72051203	72051204	rs200620206	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	17q25.1		rs200620206-C	NR	2E-6		1.4125	[1.27-1.56]	Illumina [11600722] (imputed)	N
1134	chr17	72064863	72064864	rs11868764	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	17q25.1	LINC02074	rs11868764-G	0.03	3E-6		2.9411764	[1.89-4.55]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1134	chr17	72074195	72074196	rs73359384	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	17q25.1	RPL38	rs73359384-G	0.9183	4E-6	(AA)			Illumina [NR] (imputed)	N
1134	chr17	72079782	72079783	rs138624846	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs138624846-A	0.01394	1E-8	(LTF)	0.3164	NR unit increase	Illumina [1671387] (imputed)	N
1135	chr17	72115342	72115343	rs76233302	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs76233302-T	0.02613	2E-10	(LTF)	0.2579	NR unit increase	Illumina [1671387] (imputed)	N
1135	chr17	72161814	72161815	rs11651406	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	17q25.1	NR	rs11651406-A	0.3696	9E-6		0.0166	[0.0093-0.0239] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1135	chr17	72174379	72174380	rs75461643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs75461643-T	0.0122	3E-9	(EHHADH)	1.765	NR unit increase	Illumina [1671387] (imputed)	N
1136	chr17	72251239	72251240	rs8078051	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	17q25.1	TTYH2	rs8078051-G	0.142	9E-7				Affymetrix [761050]	N
1136	chr17	72252958	72252959	rs555042436	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17q25.1		rs555042436-C	0.0016824	2E-6		0.38857	[0.23-0.55] unit decrease	Affymetrix [15580782] (imputed)	N
1136	chr17	72268207	72268208	rs7219585	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	17q25.1	DNAI2	rs7219585-A	0.13	1E-6	(inspection time)	0.2	[0.12-0.28] unit increase	Illumina [~ 610000]	N
1136	chr17	72314848	72314849	rs72848293	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Metabolite risk score for predicting weight gain	1,937 individuals	NA	17q25.1	DNAI2	rs72848293-A	0.052	3E-7		0.444	[0.27-0.61] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1136	chr17	72328965	72328966	rs552884463	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.1	NR	rs552884463-?	NR	6E-6		4.532	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1137	chr17	72362749	72362750	rs567276504	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17q25.1	NR	rs567276504-?	NR	2E-6		1.42349	[0.84-2.01] unit increase	NR [13958389] (imputed)	N
1137	chr17	72415813	72415814	rs9906564	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	17q25.1	GPRC5C	rs9906564-?	NR	1E-8		0.5119	[0.15-0.87] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1137	chr17	72418889	72418890	rs1996152	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	17q25.1	NR	rs1996152-C		8E-6		0.1214	[0.068-0.175] SD units increase	NR [10700000] (imputed)	N
1137	chr17	72438971	72438972	rs2670824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q25.1		rs2670824-G	NR	5E-13		0.0319	[0.023-0.041] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1137	chr17	72438971	72438972	rs2670824	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q25.1	GPRC5C	rs2670824-C	0.0768965	1E-18		0.00378717	[0.0029-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
1137	chr17	72456771	72456772	rs2706505	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	CD300A	rs2706505-T	0.1869	3E-10	(CLM-6)	0.44372	[0.31-0.58] unit decrease	Illumina [8683751] (imputed)	N
1137	chr17	72459090	72459091	rs72844326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300C	5,367 Icelandic ancestry individuals	NA	17q25.1		rs72844326-G	0.03837	2E-21		0.454929	[0.36-0.55] unit decrease	Illumina [7506463] (imputed)	N
1137	chr17	72459090	72459091	rs72844326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300A	5,362 Icelandic ancestry individuals	NA	17q25.1		rs72844326-G	0.03837	1E-13		0.349056	[0.26-0.44] unit decrease	Illumina [7506463] (imputed)	N
1137	chr17	72459918	72459919	rs62087202	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.1	CD300C	rs62087202-G	0.96859375	8E-8	(CD300C, 5066_134_3)	0.36896825	[0.23-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1137	chr17	72464148	72464152	rs150359707	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.1	CD300A	rs150359707-T	0.193	6E-51	(CMRF35-like molecule 8, CD300A.5630.48.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1137	chr17	72467625	72467626	rs62087214	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.1	CD300C	rs62087214-G	0.039	2E-26	(CMRF35-like molecule 6, CD300C.5066.134.3)	0.68	[0.56-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
1137	chr17	72469965	72469966	rs2272111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300A	5,362 Icelandic ancestry individuals	NA	17q25.1		rs2272111-A	0.2037	4E-84		0.419268	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
1137	chr17	72469965	72469966	rs2272111	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.1	CD300A	rs2272111-G	0.78828125	1E-52	(CD300A, 5630_48_3)	0.43491045	[0.38-0.49] unit increase	Illumina [> 1000000] (imputed)	N
1138	chr17	72520597	72520598	rs708601	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	CD300LB	rs708601-T	0.1083	5E-31	(CLM-6)	0.9978	[0.83-1.17] unit increase	Illumina [8683751] (imputed)	N
1138	chr17	72542969	72542970	rs118076379	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	17q25.1	CD300LD	rs118076379-A	0.01	9E-6		0.59	[0.34-0.84] unit increase	Illumina [14638245] (imputed)	N
1138	chr17	72545554	72545555	rs931791	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	17q25.1	NR	rs931791-?	NR	2E-6		0.054277316	[NR] unit increase	Illumina [at least 269494] (imputed)	N
1138	chr17	72597599	72597600	rs581320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.1	CTD-2006K23.1	rs581320-A	0.463443	1E-14		0.017236019	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72614610	72614611	rs8081669	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD300E	5,368 Icelandic ancestry individuals	NA	17q25.1		rs8081669-A	0.4441	7E-40		0.25396	[0.22-0.29] unit decrease	Illumina [7506463] (imputed)	N
1139	chr17	72614610	72614611	rs8081669	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.1	CD300E	rs8081669-G	0.5509375	4E-27	(CD300E, 8287_17_3)	0.26952314	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1139	chr17	72657832	72657833	rs9898593	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	17q25.1	NR	rs9898593-T	0.149	9E-6	(Males)	0.346	[0.20-0.50] unit decrease	Illumina [~ 6600000] (imputed)	N
1139	chr17	72660948	72660949	rs62084862	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	17q25.1		rs62084862-G	0.9734	7E-6		0.134	[0.075-0.193] unit decrease	Illumina [7778465] (imputed)	N
1139	chr17	72671313	72671314	rs11655369	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37, CTD-2006K23.2	rs11655369-A	0.5081	1E-21	(CLM-1)	0.68325	[0.54-0.82] unit increase	Illumina [8683751] (imputed)	N
1139	chr17	72671619	72671620	rs16978165	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37, CTD-2006K23.2	rs16978165-C	0.0681	5E-12	(CLM-1)	0.91091	[0.65-1.17] unit decrease	Illumina [8683751] (imputed)	N
1139	chr17	72673666	72673667	rs16978167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.1	CTD-2006K23.2	rs16978167-T	0.763898	3E-17		0.022263112	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72676980	72676980	rs11448862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q25.1		rs11448862-CA	NR	7E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1139	chr17	72688027	72688028	rs9916458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q25.1	NR	rs9916458-A	0.781737	3E-21		0.022545	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1139	chr17	72690642	72690643	rs117654928	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs117654928-T	0.02613	7E-9	(EHHADH)	1.06	NR unit increase	Illumina [1671387] (imputed)	N
1139	chr17	72690828	72690829	rs9906320	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs9906320-A	0.727875	2E-23				Affymetrix, Illumina [23472807] (imputed)	N
1139	chr17	72690828	72690829	rs9906320	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q25.1	NR	rs9906320-A	0.775113	9E-27		0.024622	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1139	chr17	72690828	72690829	rs9906320	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q25.1	CD300LF	rs9906320-A	0.7757	3E-9		0.02613192	[0.017-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72691927	72691928	rs2034310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q25.1	CD300LF	rs2034310-C	0.8132	4E-9		0.02706763	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72695166	72695167	rs2384955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q25.1		rs2384955-C	NR	8E-13		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1139	chr17	72695166	72695167	rs2384955	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	17q25.1	CD300LF	rs2384955-T	0.18	9E-11		0.038	[0.026-0.05] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1139	chr17	72695166	72695167	rs2384955	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	17q25.1	CD300LF	rs2384955-T	0.18	1E-13	(BMI-adjusted)	0.041	[0.029-0.053] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	RAB37, CD300LF	rs2084312-T	0.799916	4E-18		0.024240658	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.1	RAB37, CD300LF	rs2084312-T	0.799906	5E-18		0.024421977	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.1	RAB37, CD300LF	rs2084312-T	0.79993	7E-17		0.023496	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q25.1	RAB37, CD300LF	rs2084312-C	0.200015	5E-30		0.03198944	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs2084312-T	0.72912	2E-32				Affymetrix, Illumina [24649327] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q25.1	NR	rs2084312-T	0.800412	8E-36		0.028894	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs2084312-T	0.728896	3E-21				Affymetrix, Illumina [24588908] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs2084312-T	0.745494	7E-59				Affymetrix, Illumina [23467995] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q25.1	NR	rs2084312-T	0.800313	9E-58		0.037684	[0.033-0.042] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1139	chr17	72695210	72695211	rs2084312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.1		rs2084312-?	NR	3E-27				NR [~ 8900000] (imputed)	N
1139	chr17	72697092	72697093	rs77936863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs77936863-T	0.7309	3E-9		0.02419283	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699383	72699384	rs749780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs749780-A	0.690295	4E-15				Affymetrix, Illumina [23114412] (imputed)	N
1139	chr17	72699383	72699384	rs749780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q25.1	NR	rs749780-A	0.731874	5E-18		0.018874	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1139	chr17	72699383	72699384	rs749780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs749780-A	0.7316	9E-14		0.03030224	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699383	72699384	rs749780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs749780-A	0.7317	3E-9		0.02407953	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699383	72699384	rs749780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs749780-A	0.7317	4E-9		0.02390133	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699383	72699384	rs749780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs749780-A	0.7317	5E-9		0.02374859	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699383	72699384	rs749780	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs749780-A	0.7317	2E-11		0.02737397	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72699832	72699833	rs10512597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs10512597-T	0.202955	6E-10				Affymetrix, Illumina [22063850] (imputed)	N
1139	chr17	72699832	72699833	rs10512597	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	17q25.1	CD300LF, RAB37	rs10512597-T	0.18	4E-14		0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1139	chr17	72699832	72699833	rs10512597	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		17q25.1	CD300LF, RAB37	rs10512597-?	NR	2E-8		0.0078	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1139	chr17	72699832	72699833	rs10512597	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	17q25.1	CD300LF	rs10512597-T	0.18	1E-8	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1139	chr17	72699832	72699833	rs10512597	20031577	Danik JS	2009-04-01	Circ Cardiovasc Genet	Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women's Genome Health Study.	Fibrinogen	17,686 European ancestry female individuals	NA	17q25.1	CD300LF, SLC9A3R1, NAT9	rs10512597-A	0.18	8E-11		6.45	[NR] mg/dl decrease	Illumina [337343]	N
1139	chr17	72700942	72700943	rs35489971	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q25.1	CD300LF, RAB37	rs35489971-A	0.1972	1E-7		0.0438	[0.028-0.06] unit increase	NR [8041861] (imputed)	N
1139	chr17	72700942	72700943	rs35489971	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		17q25.1	CD300LF	rs35489971-?	NR	2E-8		0.0077	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1139	chr17	72701953	72701954	rs9903991	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q25.1		rs9903991-A	0.19	1E-24				Affymetrix [10369434] (imputed)	N
1139	chr17	72701953	72701954	rs9903991	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37, CD300LF	rs9903991-A	0.197	3E-77	(CLM-1)	1.24115	[1.11-1.37] unit decrease	Illumina [8683751] (imputed)	N
1139	chr17	72702418	72702419	rs34074270	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37, CD300LF	rs34074270-T	0.0139	2E-11	(CLM-1)	2.46946	[1.74-3.19] unit decrease	Illumina [8683751] (imputed)	N
1139	chr17	72702913	72702914	rs1037170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q25.1		rs1037170-T	NR	2E-26		0.0251	[0.02-0.03] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1139	chr17	72702913	72702914	rs1037170	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q25.1	NR	rs1037170-C	0.27727	4E-36		0.0288202	[0.024-0.033] unit decrease	NR [NR]	N
1139	chr17	72702977	72702978	rs1037171	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q25.1	CD300LF, RAB37	rs1037171-A	0.7233	4E-24		0.04078738	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1139	chr17	72710795	72710796	rs12942311	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Liver fibrosis in pediatric non-alcoholic fatty acid liver disease	208 Hispanic boys	NA	17q25.1	RAB37	rs12942311-C	0.2212	9E-6	(additive model)			Illumina [up to 624297]	N
1139	chr17	72716901	72716902	rs1868057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q25.1		rs1868057-G	NR	5E-17		0.0252	[0.019-0.031] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1139	chr17	72729925	72729926	rs62084910	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37	rs62084910-T	0.0491	5E-15	(CLM-1)	1.53785	[1.15-1.92] unit decrease	Illumina [8683751] (imputed)	N
1139	chr17	72735628	72735629	rs6501734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.1	NR	rs6501734-T	NR	3E-13		0.028	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1139	chr17	72737754	72737755	rs112607667	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	17q25.1	RAB37	rs112607667-T	0.0191	1E-16	(CLM-1)	2.7509	[2.1-3.4] unit decrease	Illumina [8683751] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	MIR3615	rs2384952-C	0.539256	9E-12		0.016043214	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q25.1	MIR3615	rs2384952-C	0.539231	3E-16		0.018949792	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q25.1	MIR3615	rs2384952-T	0.460719	8E-29		0.026306074	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q25.1	MIR3615	rs2384952-C	0.539278	4E-11		0.0154012805	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	17q25.1	MIR3615	rs2384952-C	0.53921	1E-12		0.0165792	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs2384952-C	0.508904	3E-10				Affymetrix, Illumina [19905671] (imputed)	N
1139	chr17	72744511	72744512	rs2384952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	17q25.1	NR	rs2384952-C	0.538552	5E-12		0.015358	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1140	chr17	72752453	72752454	rs4789094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q25.1		rs4789094-G	NR	3E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1140	chr17	72752453	72752454	rs4789094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	17q25.1		rs4789094-G	NR	3E-8		0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1140	chr17	72752453	72752454	rs4789094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.1	NR	rs4789094-G	0.53142	2E-11		0.01379	[0.0098-0.0178] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1140	chr17	72754923	72754924	rs12603194	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q25.1	SLC9A3R1	rs12603194-A	0.4974	7E-10		0.02250925	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1140	chr17	72758166	72758167	rs41282065	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17q25.1		rs41282065-?	NR	4E-12		0.104238	[0.074-0.134] unit increase	NR [9800000] (imputed)	N
1140	chr17	72758166	72758167	rs41282065	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	17q25.1		rs41282065-?	NR	4E-10		0.0938065	[0.064-0.124] unit increase	NR [9800000] (imputed)	N
1140	chr17	72758166	72758167	rs41282065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	SLC9A3R1	rs41282065-A	0.00482400000000005	8E-11		0.10343135	[0.072-0.135] unit increase	Affymetrix [93095623] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17q25.1		rs147104235-?	NR	5E-22		0.280029	[0.22-0.34] unit increase	NR [9800000] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	17q25.1		rs147104235-?	NR	2E-16		0.236629	[0.18-0.29] unit increase	NR [9800000] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	17q25.1		rs147104235-?	NR	1E-12		0.211625	[0.16-0.27] unit increase	NR [9800000] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Basophil count	438,607 European ancestry individuals	NA	17q25.1		rs147104235-?	NR	2E-8		0.152323	[0.097-0.207] unit increase	NR [9800000] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	SLC9A3R1	rs147104235-G	7.89999999999957E-4	6E-19		0.4065234	[0.32-0.5] unit increase	Affymetrix [93095623] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q25.1	SLC9A3R1	rs147104235-G	7.90999999999986E-4	9E-14		0.3409181	[0.25-0.43] unit increase	Affymetrix [93095623] (imputed)	N
1140	chr17	72759558	72759559	rs147104235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.1	SLC9A3R1	rs147104235-G	7.89999999999957E-4	1E-11		0.3120928	[0.22-0.4] unit increase	Affymetrix [93095623] (imputed)	N
1140	chr17	72762645	72762646	rs8064299	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q25.1		rs8064299-C	0.462	7E-17				Affymetrix [10369434] (imputed)	N
1140	chr17	72762645	72762646	rs8064299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q25.1	SLC9A3R1	rs8064299-A	0.5388	3E-17		0.03031678	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1140	chr17	72763797	72763798	rs745318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.1	SLC9A3R1	rs745318-T	0.463708	2E-21		0.02124874	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1140	chr17	72766251	72766252	rs895692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q25.1		rs895692-A	NR	1E-34		0.0257	[0.022-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1140	chr17	72769410	72769411	rs878905	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.1	NAT9	rs878905-A	0.538061	3E-13		0.016248507	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1140	chr17	72769693	72769694	rs878907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.1		rs878907-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1140	chr17	72773046	72773047	rs62084913	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.1	NR	rs62084913-T	0.3982	9E-6	(EA)	0.0307	[0.017-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
1140	chr17	72825472	72825473	rs56171387	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	17q25.1	TMEM104	rs56171387-?	NR	7E-6		1.0583634	[1.03-1.08]	Illumina [at least 4756722] (imputed)	N
1140	chr17	72825472	72825473	rs56171387	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	17q25.1	TMEM104, GRIN2C	rs56171387-?	NR	4E-6		1.0596397	[1.03-1.09]	Illumina [at least 4756722] (imputed)	N
1140	chr17	72847898	72847899	rs11575878	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GRIN2C	rs11575878-?	NR	7E-10	(female)	1.42343	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1140	chr17	72853449	72853450	rs690578	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17q25.1	NR	rs690578-?	NR	6E-6		0.0911026	[0.052-0.131] unit decrease	NR [13958389] (imputed)	N
1140	chr17	72859587	72859588	rs33983112	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FDXR	rs33983112-?	NR	6E-10	(female)	1.29731	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1141	chr17	72929379	72929380	rs2035835	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	17q25.1		rs2035835-G	0.321886	6E-12		0.0663169	[0.047-0.086] decrease	Affymetrix [11014269] (imputed)	N
1141	chr17	72929379	72929380	rs2035835	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q25.1	OTOP2	rs2035835-G	0.3228	4E-9		0.089	[0.06-0.118] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1141	chr17	72938099	72938100	rs1542752	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	17q25.1	OTOP3	rs1542752-T	0.153	1E-12		0.034	[0.025-0.044] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1141	chr17	72949145	72949146	rs2307010	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.1	NR	rs2307010-?	NR	8E-6		4.469	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1141	chr17	72975747	72975748	rs71380849	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q25.1	C17orf28, CDR2L	rs71380849-A	0.05	9E-7		1.47	[1.26-1.71]	NR [NR]	N
1142	chr17	73011447	73011448	rs9915753	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	17q25.1	CD300E, SLC9A3R1	rs9915753-?		4E-7		12.24	[8.51-15.97] unit increase	Illumina [~ 4900000] (imputed)	N
1142	chr17	73011447	73011448	rs9915753	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	17q25.1	SLC9A3R1	rs9915753-?		5E-6		3.814	[1.64-5.98] unit increase	Illumina [~ 4900000] (imputed)	N
1142	chr17	73018773	73018774	rs9899728	26913989	Traylor M	2016-02-23	Ann Neurol	Shared genetic contribution to Ischaemic Stroke and Alzheimer's Disease.	Alzheimer's disease or small vessel stroke	17,008 European ancestry Alzheimer's disease cases, 3,651 European ancestry small vessel stroke cases, 95,811 European ancestry controls	NA	17q25.1	KCTD2, ATP5H, ICT1	rs9899728-?	NR	2E-8				Affymetrix, Illumina [at least 7055881]	N
1142	chr17	73032318	73032319	rs12949451	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	17q25.1	intergenic	rs12949451-A	0.9152	5E-7	(AUC)	0.439	[0.27-0.61] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1142	chr17	73037867	73037868	rs7210415	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q25.1	CDR2L, ICT1, ATP5H, KCTD2, SLC16A5, ARMC7	rs7210415-G	0.474	4E-6		1.0535854		NR [9372253] (imputed)	N
1142	chr17	73040574	73040575	rs28576234	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	17q25.1	NR	rs28576234-?	NR	3E-6		0.6193	[0.34-0.9] unit increase	Illumina [at least 560000] (imputed)	N
1142	chr17	73043336	73043337	rs12952376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.1	KCTD2	rs12952376-T	0.322437	3E-16		0.019495593	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr17	73046169	73046170	rs142991058	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	17q25.1	KCTD2	rs142991058-G	0.996	8E-7	(AA)	0.15	unit increase	Illumina [NR] (imputed)	N
1142	chr17	73051217	73051218	rs139610516	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.1	NR	rs139610516-?	NR	3E-6		4.677	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1142	chr17	73060072	73060073	rs11077773	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	17q25.1	KCTD2	rs11077773-T	0.06	8E-6	(4-choice RT)	0.24	[0.14-0.34] unit increase	Illumina [~ 610000]	N
1142	chr17	73064950	73064951	rs72844534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q25.1	KCTD2	rs72844534-A	0.323081	4E-12		0.016454559	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1142	chr17	73066981	73066982	rs8079549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q25.1	AC111186.1	rs8079549-T	0.457639	1E-10		0.014388036	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1142	chr17	73066981	73066982	rs8079549	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	17q25.1	AC111186.1	rs8079549-T	0.4526	1E-9		0.02218288	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1142	chr17	73066981	73066982	rs8079549	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q25.1	AC111186.1	rs8079549-T	0.4526	5E-9		0.02117945	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1142	chr17	73086990	73086991	rs117844704	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.1	NT5C	rs117844704-A	0.9696875	3E-77	(NT5C, 12560_9_3)	1.301373	[1.17-1.43] unit increase	Illumina [> 1000000] (imputed)	N
1142	chr17	73100469	73100470	rs118143893	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs118143893-A	0.0122	8E-9	(HEXA)	0.04536	NR unit increase	Illumina [1671387] (imputed)	N
1142	chr17	73100469	73100470	rs118143893	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs118143893-A	0.0122	5E-12	(ANP32A)	0.1133	NR unit increase	Illumina [1671387] (imputed)	N
1142	chr17	73100469	73100470	rs118143893	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs118143893-A	0.0122	3E-10	(HEXB)	0.1163	NR unit increase	Illumina [1671387] (imputed)	N
1142	chr17	73100469	73100470	rs118143893	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs118143893-A	0.0122	2E-8	(ARSA)	0.006371	NR unit increase	Illumina [1671387] (imputed)	N
1142	chr17	73122166	73122167	rs1551966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q25.1		rs1551966-C	NR	7E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1142	chr17	73127682	73127683	rs4788867	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q25.1	NR	rs4788867-T	0.287609	5E-11		0.0141131	[0.0099-0.0183] unit decrease	NR [NR]	N
1143	chr17	73140940	73140941	rs78625720	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NT5C	5,359 Icelandic ancestry individuals	NA	17q25.1		rs78625720-A	0.02908	4E-160		1.4071	[1.3-1.51] unit decrease	Illumina [7506463] (imputed)	N
1143	chr17	73140940	73140941	rs78625720	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.1	NT5C	rs78625720-A	0.03	1E-25	(5'(3')-deoxyribonucleotidase, cytosolic type, NT5C.12560.9.3)	0.75	[0.61-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
1143	chr17	73149849	73149850	rs72844546	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q25.1	NR	rs72844546-C	0.345834	3E-33		0.00998897	[0.0083-0.0116] unit increase	Affymetrix [16582909] (imputed)	N
1143	chr17	73149849	73149850	rs72844546	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q25.1	NR	rs72844546-C	0.345886	3E-18		0.0103075	[0.0078-0.0128] unit increase	Affymetrix [16585854] (imputed)	N
1143	chr17	73149849	73149850	rs72844546	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q25.1	NR	rs72844546-C	0.345834	6E-27		0.00989122	[0.008-0.0118] unit increase	Affymetrix [16582965] (imputed)	N
1143	chr17	73149849	73149850	rs72844546	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q25.1	NR	rs72844546-C	0.345886	8E-12		0.00969476	[0.0068-0.0126] unit increase	Affymetrix [16585866] (imputed)	N
1143	chr17	73160550	73160551	rs141237548	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q25.1	HN1, SUMO2	rs141237548-T	0.988673	1E-25	(orotidine)	0.753	[0.61-0.89] unit increase	Illumina [13039987] (imputed)	N
1143	chr17	73172174	73172175	rs117162506	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	SUMO2	rs117162506-A	0.0183	4E-7		0.1353	[0.083-0.188] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1143	chr17	73174436	73174437	rs189281248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	17q25.1		rs189281248-T	0.009642	4E-8		0.0978165	[0.063-0.133] unit decrease	Illumina [13478956] (imputed)	N
1143	chr17	73175293	73175294	rs35271045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	17q25.1		rs35271045-C	0.647641	1E-8		0.020581	[0.013-0.028] unit increase	Illumina [13476165] (imputed)	N
1143	chr17	73175293	73175294	rs35271045	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q25.1	SUMO2	rs35271045-?		3E-8		0.0233	[0.015-0.032] unit increase	Illumina [31500000] (imputed)	N
1143	chr17	73175293	73175294	rs35271045	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	17q25.1	SUMO2	rs35271045-?	NR	5E-8		0.02319	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1143	chr17	73187031	73187032	rs35559984	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	17q25.1	SUMO2	rs35559984-CA	0.652	8E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1143	chr17	73206234	73206235	rs117659769	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	17q25.1	NR	rs117659769-A	0.0137853	2E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1143	chr17	73224638	73224639	rs1005714	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	17q25.1	NUP85, GRB2	rs1005714-?	0.8	2E-8		1.1764705		Illumina [4723365]	N
1143	chr17	73226458	73226458	rs202128511	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q25.1	NR	rs202128511-T	0.214362	1E-17		0.0115017	[0.0088-0.0142] unit increase	Affymetrix [16582621] (imputed)	N
1143	chr17	73226458	73226458	rs202128511	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q25.1	NR	rs202128511-T	0.214362	1E-17		0.0127907	[0.0099-0.0157] unit increase	Affymetrix [16582614] (imputed)	N
1143	chr17	73230855	73230856	rs9988	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q25.1	NA	rs9988-T	0.8347	2E-10		0.0152	[0.01-0.02] unit increase	NR [~ 27400000] (imputed)	N
1143	chr17	73240558	73240559	rs2306216	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q25.1	NR	rs2306216-A	0.167691	9E-12		0.0266929	[0.019-0.035] unit increase	Affymetrix [16577313] (imputed)	N
1143	chr17	73259082	73259083	rs2279162	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	17q25.1		rs2279162-?	NR	4E-8		0.00546805	[0.0035-0.0074] unit decrease	NR [NR]	N
1143	chr17	73263011	73263012	rs61739324	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.1	NR	rs61739324-T	0.03136	1E-8	(ACSF2)	0.0224	NR unit increase	Illumina [1671387] (imputed)	N
1143	chr17	73268800	73268801	rs3744231	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q25.1		rs3744231-T	NR	9E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1144	chr17	73272550	73272551	rs62089321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q25.1		rs62089321-T	NR	7E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1144	chr17	73274180	73274181	rs2306217	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q25.1		rs2306217-T	0.842487	9E-9		0.0316492	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73275746	73275747	rs11077783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q25.1		rs11077783-G	0.317593	2E-8		0.0237338	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73275746	73275747	rs11077783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q25.1		rs11077783-G	0.317586	4E-8		0.0235281	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1144	chr17	73275746	73275747	rs11077783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q25.1		rs11077783-G	0.317586	1E-8		0.0241012	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1144	chr17	73275746	73275747	rs11077783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.1	SLC25A19	rs11077783-A	0.683831	2E-9		0.014532759	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1144	chr17	73275746	73275747	rs11077783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.1	SLC25A19	rs11077783-A	0.683842	2E-10		0.015419952	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1144	chr17	73308345	73308346	rs9909443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q25.1	NR	rs9909443-?	NR	8E-14				Affymetrix [~ 8270000] (imputed)	N
1144	chr17	73309268	73309269	rs4559942	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q25.1	GRB2	rs4559942-G	0.228452	1E-8		0.0135489	[0.0089-0.0182] unit decrease	Affymetrix [NR] (imputed)	N
1144	chr17	73309337	73309338	rs55762977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q25.1	NR	rs55762977-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1144	chr17	73309431	73309432	rs55994995	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	17q25.1	NR	rs55994995-A	NR	1E-6	(GEE model)	0.96571	[0.57-1.36] unit decrease	NR [NR] (imputed)	N
1144	chr17	73312183	73312184	rs8072449	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	17q25.1	GRB2	rs8072449-?	NR	1E-11		1.1904762	[1.12-1.25]	Illumina [at least 5000000] (imputed)	N
1144	chr17	73319891	73319892	rs4402606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	17q25.1		rs4402606-T	0.284398	6E-9		0.0275628	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73319891	73319892	rs4402606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	17q25.1		rs4402606-T	0.284398	1E-8		0.0274683	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73319891	73319892	rs4402606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	17q25.1		rs4402606-T	0.284398	3E-8		0.0266621	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73319891	73319892	rs4402606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	17q25.1		rs4402606-T	0.284398	5E-8		0.0257446	[0.016-0.035] unit decrease	NR [11722792] (imputed)	N
1144	chr17	73321116	73321117	rs2385263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.1		rs2385263-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1144	chr17	73335775	73335776	rs9900529	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q25.1	GRB2	rs9900529-C	NR	5E-8		1.0648	NR	Affymetrix, Illumina [8278136] (imputed)	N
1144	chr17	73341283	73341284	rs36023980	29848360	Julia A	2018-05-30	Arthritis Res Ther	Genome-wide association study meta-analysis identifies five new loci for systemic lupus erythematosus.	Systemic lupus erythematosus	4,943 European ancestry cases, 8,483 European ancestry controls	NA	17q25.1	GRB2	rs36023980-C	NR	5E-9		1.18	[1.13-1.24]	Illumina [7110321] (imputed)	N
1144	chr17	73343926	73343927	rs9900586	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q25.1	NR	rs9900586-A	0.21	2E-8		0.0122	[0.0078-0.0166] unit decrease	NR [NR]	N
1144	chr17	73360153	73360154	rs9894206	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	17q25.1	GRB2	rs9894206-?	NR	2E-6	(AA)	1.25	[1.15-1.39]	Illumina [at least 5000000] (imputed)	N
1144	chr17	73369421	73369422	rs959260	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	17q25.1	GRB2	rs959260-A		3E-6		1.14	[1.08-1.20]	Illumina [644674]	N
1144	chr17	73377675	73377676	rs6501784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q25.1	GRB2	rs6501784-C	NR	2E-8		0.0236778	[0.015-0.032] unit decrease	Affymetrix [127266] (imputed)	N
1144	chr17	73378784	73378784	rs150302737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q25.1		rs150302737-TTTTA	NR	2E-16		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1144	chr17	73388769	73388770	rs9901434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.1		rs9901434-?	NR	2E-25				NR [~ 8900000] (imputed)	N
1144	chr17	73391144	73391145	rs4788891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	17q25.1	GRB2	rs4788891-A	NR	7E-12		0.0287583	[0.021-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1144	chr17	73393458	73393459	rs2053158	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q25.1	GRB2	rs2053158-A	0.84	2E-10		6.34	z-score increase	Affymetrix [4314223] (imputed)	N
1144	chr17	73394715	73394716	rs76882401	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	GRB2	rs76882401-T	0.9761	4E-7		0.1348	[0.083-0.187] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1144	chr17	73397482	73397483	rs12451296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q25.1		rs12451296-A	NR	6E-11		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1145	chr17	73404536	73404537	rs930297	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	17q25.1	GRB2	rs930297-?	NR	1E-7		1.2048193	[1.12-1.30]	Illumina [at least 5000000] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q25.1		rs9908820-A	0.270873	2E-10		0.0285307	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	17q25.1		rs9908820-A	0.270873	5E-9		0.0260574	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q25.1		rs9908820-A	0.270873	4E-10		0.0279066	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	17q25.1		rs9908820-A	0.270873	2E-8		0.0254012	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q25.1		rs9908820-A	0.270921	5E-8		0.0242977	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1145	chr17	73408818	73408819	rs9908820	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	17q25.1		rs9908820-?	NR	2E-8		0.0058001	[0.0038-0.0078] unit decrease	NR [NR]	N
1145	chr17	73408818	73408819	rs9908820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.1		rs9908820-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1145	chr17	73418861	73418862	rs9896052	26188370	Burdon KP	2015-07-19	Diabetologia	Genome-wide association study for sight-threatening diabetic retinopathy reveals association with genetic variation near the GRB2 gene.	Sight-threatening diabetic retinopathy in type 2 diabetes	336 European ancestry cases with retinopathy, 508 European ancestry cases without retinopathy	263 European ancestry cases with retinopathy, 320 European ancestry cases without retinopathy, 334 South Asian ancestry cases with retinopathy, 365 South Asian ancestry cases without retinopathy	17q25.1	KIAA0195, CASKIN2, TSEN54, LLGL2	rs9896052-A	0.294	7E-7	(EA)	1.67	[1.30-2.15] (Discovery)	Illumina [602755]	N
1145	chr17	73439889	73439890	rs8065231	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.1	KIAA0195	rs8065231-?	NR	5E-10	(EA)	0.003143	[0.00059-0.0057] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr17	73439889	73439890	rs8065231	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (1df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.1	KIAA0195	rs8065231-?	NR	6E-7	(EA)	0.01588	[0.0097-0.0221] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr17	73447029	73447030	rs6501801	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.1	KIAA0195	rs6501801-?	NR	3E-7	(AA)	0.01266	[0.0053-0.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr17	73447029	73447030	rs6501801	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.1	KIAA0195	rs6501801-?	NR	3E-10		0.003038	[0.00092-0.00515] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr17	73447029	73447030	rs6501801	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (1df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.1	KIAA0195	rs6501801-?	NR	7E-6		0.01131	[0.0064-0.0163] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1145	chr17	73449631	73449632	rs181228315	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		17q25.1	Intergenic	rs181228315-A	0.986	2E-6	(liability model)	0.35	[0.21-0.49] unit decrease	NR [19725427] (imputed)	N
1145	chr17	73503488	73503489	rs10852764	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	17q25.1	NR	rs10852764-C	0.9034	3E-8		0.002144	[0.0014-0.0029] unit increase	Affymetrix [NR] (imputed)	N
1145	chr17	73505171	73505172	rs7501873	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q25.1	CASKIN2	rs7501873-G	0.2223	5E-8		0.4518	[0.29-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1145	chr17	73513184	73513185	rs7218675	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q25.1	TSEN54	rs7218675-A	0.71	2E-6		0.035	[0.021-0.049] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1145	chr17	73513184	73513185	rs7218675	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	17q25.1	TSEN54	rs7218675-A	NR	1E-8		1.18	[1.11-1.25]	Affymetrix [28509962] (imputed)	N
1145	chr17	73513184	73513185	rs7218675	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (high FEV1 vs average FEV1)	4,902 European ancestry individuals with high FEV1 measurements, 9,827 European ancestry individuals with average FEV1 measurements	NA	17q25.1	TSEN54	rs7218675-?	NR	5E-7		1.150748	[1.09-1.22]	Affymetrix [28509962] (imputed)	N
1145	chr17	73513200	73513209	rs58038334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.1	TSEN54	rs58038334-C	0.129762	1E-9		0.020546775	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr17	73513200	73513209	rs58038334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.1	TSEN54	rs58038334-C	0.129763	2E-10		0.021431966	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr17	73514315	73514316	rs62088463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q25.1		rs62088463-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1145	chr17	73515464	73515465	rs71382170	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	TSEN54	rs71382170-A	0.0599	3E-7		0.0618	[0.038-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	8E-9		0.0260125	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	5E-8		0.0249652	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	5E-8		0.0247767	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	5E-8		0.0246799	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	3E-8		0.0253136	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	3E-9		0.0264713	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	1E-8		0.0254543	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	7E-9		0.0259965	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73516007	73516008	rs59476633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.1		rs59476633-G	0.748713	3E-8		0.0247207	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73519412	73519413	rs8064529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q25.1		rs8064529-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1145	chr17	73521858	73521858	rs368354171	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	17q25.1		rs368354171-G	0.363095	5E-8		0.0230069	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1145	chr17	73525669	73525670	rs9892893	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q25.1	TSEN54	rs9892893-T	0.2606	1E-7		0.0143	[0.009-0.0196] unit increase	Affymetrix [19819130] (imputed)	N
1145	chr17	73525669	73525670	rs9892893	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q25.1	TSEN54	rs9892893-T	0.2606	7E-6		0.0124	[0.0071-0.0177] unit increase	Affymetrix [19819130] (imputed)	N
1145	chr17	73525669	73525670	rs9892893	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q25.1	TSEN54	rs9892893-T	0.2606	2E-13		0.0198	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1146	chr17	73538222	73538223	rs9910589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q25.1		rs9910589-G	NR	6E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1146	chr17	73538222	73538223	rs9910589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.1		rs9910589-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1146	chr17	73556606	73556607	rs1671031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.1		rs1671031-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1146	chr17	73560133	73560134	rs1661725	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.1	LLGL2	rs1661725-T	0.627626	5E-10		0.0119237	[0.0082-0.0157] unit decrease	NR [13737936] (imputed)	N
1146	chr17	73606301	73606302	rs820137	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q25.1	RECQL5	rs820137-C	0.028119430426296	5E-6	(F_Desulfovibrionaceae_HB)	0.757581	[0.43-1.08] unit decrease	Illumina [7711310] (imputed)	N
1146	chr17	73627439	73627440	rs60199317	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	RECQL5	rs60199317-T	0.109	2E-7		0.0572	[0.036-0.079] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1146	chr17	73627439	73627440	rs60199317	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	RECQL5	rs60199317-T	0.1249	2E-7		0.0524	[0.033-0.072] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1146	chr17	73627817	73627818	rs820198	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	17q25.1		rs820198-T	0.01	6E-6		2.97	[1.86-4.75]	Illumina [9962324] (imputed)	N
1146	chr17	73651253	73651254	rs820212	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q25.1	RECQL5	rs820212-T	0.3748	3E-10		0.0123	[0.0084-0.0162] unit decrease	Affymetrix [18391927] (imputed)	N
1147	chr17	73687494	73687495	rs820218	26350878	Tashjian RZ	2015-09-05	J Shoulder Elbow Surg	Genome-wide association study for rotator cuff tears identifies two significant single-nucleotide polymorphisms.	Rotator cuff tears	311 European ancestry cases, 2,641 European ancestry controls	NA	17q25.1	SAP30BP	rs820218-?	NR	4E-9				Illumina [257558]	N
1147	chr17	73688293	73688294	rs820217	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lip morphology	2,447 European ancestry individuals	671 European ancestry individuals	17q25.1	Intergenic	rs820217-A	0.3488	4E-7	(Upper lip height)	0.2727	[0.15-0.39] unit increase	Illumina [34985077] (imputed)	N
1147	chr17	73755391	73755392	rs820384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	GALK1	rs820384-C	0.662526	8E-10		0.014674914	[0.01-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
1147	chr17	73758240	73758241	rs72860361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.1	NR	rs72860361-A	0.847204	2E-13		0.02054	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1147	chr17	73764499	73764500	rs4641805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q25.1		rs4641805-A	NR	2E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1147	chr17	73764499	73764500	rs4641805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	17q25.1		rs4641805-A	NR	5E-8		0.0585	[0.038-0.079] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1147	chr17	73767088	73767089	rs113368673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs113368673-T	0.874114	3E-11				Affymetrix, Illumina [22063850] (imputed)	N
1147	chr17	73767436	73767437	rs4485425	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q25.1	GALK1, UNK	rs4485425-G	0.72	2E-11		6.73	z-score increase	Affymetrix [4312306] (imputed)	N
1147	chr17	73767436	73767437	rs4485425	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q25.1	H3F3B	rs4485425-A	0.289067	4E-10		0.0144284	[0.0099-0.0189] unit decrease	Affymetrix [NR] (imputed)	N
1147	chr17	73775824	73775825	rs12882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.1		rs12882-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q25.1	H3F3B	rs73352129-?	NR	1E-13		0.0209	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q25.1	NR	rs73352129-G	0.293396	4E-33		0.0109359	[0.0092-0.0127] unit increase	Affymetrix [16582909] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q25.1	NR	rs73352129-G	0.293396	1E-19		0.00925674	[0.0073-0.0112] unit increase	Affymetrix [16582965] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.1		rs73352129-C	NR	2E-6		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.1	NR	rs73352129-C	NR	2E-6		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1147	chr17	73778608	73778609	rs73352129	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.1	NR	rs73352129-C	NR	5E-8		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1147	chr17	73779074	73779075	rs78057960	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q25.1	NR	rs78057960-T	0.29357599999999995	4E-18		0.0113463	[0.0088-0.0139] unit increase	Affymetrix [16585854] (imputed)	N
1147	chr17	73779074	73779075	rs78057960	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q25.1	NR	rs78057960-T	0.29357599999999995	1E-8		0.00897932	[0.006-0.012] unit increase	Affymetrix [16585866] (imputed)	N
1147	chr17	73782190	73782191	rs2125345	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	17q25.1	NR	rs2125345-C	0.29	7E-7		0.016	unit decrease	Illumina [242289]	N
1147	chr17	73782190	73782191	rs2125345	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	17q25.1	UNK	rs2125345-C	NR	3E-22		0.020337977	[0.016-0.024] unit increase	Illumina [242289]	N
1147	chr17	73782190	73782191	rs2125345	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	17q25.1	NR	rs2125345-C	0.29	2E-11		0.023	unit decrease	Illumina [242289]	N
1147	chr17	73790092	73790093	rs1047743	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.1	UNK	rs1047743-C	0.6027	2E-8		0.0162	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1148	chr17	73799102	73799103	rs10401030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q25.1	UNK	rs10401030-G	0.258042	2E-10		0.016946718	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q25.1		rs9900933-C	NR	8E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q25.1		rs9900933-C	NR	2E-14		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.1	UNK	rs9900933-C	0.343838	1E-14		0.017938688	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs9900933-C	0.375233	3E-19				Affymetrix, Illumina [19872809] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q25.1	NR	rs9900933-C	0.344275	1E-21		0.020015	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.1		rs9900933-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.1		rs9900933-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1148	chr17	73801153	73801154	rs9900933	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	17q25.1	UNK	rs9900933-C	0.3438	8E-10		0.02316879	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1148	chr17	73807960	73807961	rs62088246	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q25.1	UNK	rs62088246-G	NR	7E-6		1.0575	NR	Affymetrix, Illumina [8278136] (imputed)	N
1148	chr17	73819136	73819137	rs8078452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.1	UNK	rs8078452-C	0.212074	5E-11		0.017915608	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1148	chr17	73822444	73822445	rs2008012	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q25.1	NR	rs2008012-?		5E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1148	chr17	73822597	73822597	rs5822105	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	17q25.1	UNK, UNC13D	rs5822105-GC	0.3435	3E-9		0.02234024	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1148	chr17	73824120	73824121	rs7210574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q25.1		rs7210574-C	NR	3E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1148	chr17	73824120	73824121	rs7210574	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q25.1	NR	rs7210574-C	0.32902600000000004	2E-20		0.010489	[0.0082-0.0128] unit increase	Affymetrix [16582621] (imputed)	N
1148	chr17	73824120	73824121	rs7210574	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q25.1	NR	rs7210574-C	0.32902600000000004	8E-16		0.00977435	[0.0073-0.0123] unit increase	Affymetrix [16582614] (imputed)	N
1148	chr17	73824158	73824159	rs150952348	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	17q25.1	UNC13D	rs150952348-?	NR	7E-7				Illumina [83898]	N
1148	chr17	73824785	73824786	rs75988962	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q25.1	UNC13D	rs75988962-C	0.881442	2E-8		0.0172523	[0.011-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	17q25.1	UNC13D	rs111365807-C	0.12	4E-8				NR [> 9500000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	17q25.1	NR	rs111365807-G	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q25.1	NR	rs111365807-G	NR	1E-7				Affymetrix [~ 8270000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.1	NR	rs111365807-G	NR	1E-7				Affymetrix [~ 8270000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	17q25.1	NR	rs111365807-G	NR	4E-7				Affymetrix [~ 8270000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	17q25.1	NR	rs111365807-G	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.1		rs111365807-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1148	chr17	73825462	73825463	rs111365807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.1		rs111365807-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1148	chr17	73825663	73825664	rs7216664	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q25.1	NR	rs7216664-G	0.36194000000000004	2E-10		0.0194532	[0.013-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1148	chr17	73826405	73826406	rs2290769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q25.1		rs2290769-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1148	chr17	73828902	73828903	rs112267124	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	17q25.1	UNC13D	rs112267124-A	0.234222528006163	3E-8		0.042884335	[0.028-0.058] unit increase	Affymetrix [35186738] (imputed)	N
1148	chr17	73828902	73828903	rs112267124	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs112267124-G	0.769515	1E-19				Affymetrix, Illumina [17210439] (imputed)	N
1148	chr17	73830995	73830996	rs17581728	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q25.1	NR	rs17581728-C	0.766164	6E-20		0.020634	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1148	chr17	73835180	73835180	rs558988054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.1	UNC13D	rs558988054-CA	0.23118	3E-12		0.018542087	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1148	chr17	73839365	73839366	rs3744009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q25.1		rs3744009-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1148	chr17	73840242	73840243	rs3744010	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q25.1	UNC13D	rs3744010-A	0.292	1E-13		0.2759	[0.2-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1148	chr17	73846104	73846105	rs3988211	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q25.1	NR	rs3988211-A	NR	5E-8		0.02767	[0.018-0.038] unit increase	Affymetrix [10847151] (imputed)	N
1148	chr17	73846316	73846321	rs141406180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q25.1		rs141406180-T	NR	3E-8		0.0152	[0.0099-0.0205] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1148	chr17	73846316	73846321	rs141406180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q25.1		rs141406180-T	NR	2E-8		0.0173	[0.011-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1148	chr17	73848541	73848542	rs535487752	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q25.1	WBP2	rs535487752-T	0.83516	5E-8		0.0104574	[0.0067-0.0142] unit decrease	Affymetrix [12370749]	N
1148	chr17	73851112	73851113	rs55868394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.1	WBP2	rs55868394-A	0.125989	2E-10		0.021871746	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1148	chr17	73851112	73851113	rs55868394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs55868394-A	0.114749	9E-13				Affymetrix, Illumina [24588908] (imputed)	N
1148	chr17	73851112	73851113	rs55868394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q25.1	NR	rs55868394-A	0.123197	4E-14		0.022682	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1148	chr17	73871466	73871467	rs3744017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.1	NA	rs3744017-A	0.1931	2E-10		0.0139	[0.0096-0.0182] unit increase	NR [~ 27400000] (imputed)	N
1148	chr17	73871772	73871773	rs3744020	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	TRIM47	rs3744020-A	0.1897	7E-35		0.0899	[0.076-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1148	chr17	73871772	73871773	rs3744020	30659137	Traylor M	2019-01-18	Neurology	Genetic variation in PLEKHG1 is associated with white matter hyperintensities (n = 11,226).	White matter hyperintensity volume	8,429 European ancestry individuals, 2,797 European ancestry individuals with ischemic stroke	1,202 European ancestry individuals	17q25.1	TRIM65	rs3744020-A	NR	1E-11		0.106	[0.075-0.137] unit increase	Affymetrix, Illumina [at least 39131578] (imputed)	N
1148	chr17	73871772	73871773	rs3744020	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter hyperintensity volume	8,429 European ancestry individuals	NA	17q25.1	TRIM47	rs3744020-A	0.19	4E-11		0.109	[0.078-0.140] unit increase	Affymetrix [up to 39131578] (imputed)	N
1148	chr17	73872947	73872948	rs1055129	21681796	Fornage M	2011-06-16	Ann Neurol	Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium.	White matter hyperintensity burden	9,361 European ancestry individuals	3,024 European ancestry individuals	17q25.1	TRIM47	rs1055129-G	0.30	3E-11				Affymetrix, Illumina [2153274] (imputed)	N
1148	chr17	73878653	73878654	rs56000661	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17q25.1	NR	rs56000661-A	0.688336	1E-23		0.0207389	[0.017-0.025] unit increase	Affymetrix [15000001]	N
1148	chr17	73878653	73878654	rs56000661	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q25.1	TRIM47	rs56000661-C	0.6284	4E-8		0.1444	[0.093-0.196] mmHg increase	Affymetrix [NR] (imputed)	N
1148	chr17	73879850	73879851	rs142186653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	17q25.1		rs142186653-C	0.23	7E-6		0.01	mmol/L decrease	NR [NR] (imputed)	N
1148	chr17	73879850	73879851	rs142186653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q25.1		rs142186653-C	0.23	4E-11				NR [NR] (imputed)	N
1148	chr17	73879850	73879851	rs142186653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q25.1		rs142186653-C	0.23	1E-11		0.012	% increase	NR [NR] (imputed)	N
1148	chr17	73879850	73879851	rs142186653	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q25.1	NR	rs142186653-?		3E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1148	chr17	73882147	73882148	rs7214628	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	17q25.1	WBP2, TRIM47, TRIM65	rs7214628-A		5E-36		12.488	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
1148	chr17	73882147	73882148	rs7214628	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	17q25.1	TRIM65, ACOX1, UNC13D, TRIM47, FBF1	rs7214628-G	0.19	5E-19				Affymetrix, Illumina [14227402] (imputed)	N
1148	chr17	73882147	73882148	rs7214628	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	17q25.1	TRIM65, ACOX1, UNC13D, TRIM47, FBF1	rs7214628-G	0.19	3E-19	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1148	chr17	73883917	73883918	rs35392904	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	TRIM65	rs35392904-T	0.7981	4E-28		0.0765	[0.063-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1148	chr17	73884980	73884981	rs56255629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	TRIM65	rs56255629-G	0.239332	1E-9		0.016257858	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1148	chr17	73886887	73886888	rs3760128	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	TRIM65	rs3760128-G	0.375	7E-11				Illumina [Exome array]	N
1148	chr17	73886887	73886888	rs3760128	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	17q25.1	TRIM65	rs3760128-G	0.3467	1E-9		0.0126	[0.0085-0.0167] unit increase	Illumina [246328]	N
1148	chr17	73888353	73888354	rs34974290	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	17q25.1	TRIM65	rs34974290-A	NR	3E-46		0.1035	[0.089-0.118] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1148	chr17	73888353	73888354	rs34974290	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q25.1	NR	rs34974290-?		3E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1148	chr17	73888671	73888672	rs3744028	21681796	Fornage M	2011-06-16	Ann Neurol	Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium.	White matter hyperintensity burden	9,361 European ancestry individuals	3,024 European ancestry individuals	17q25.1	TRIM65	rs3744028-C	0.18	4E-15				Affymetrix, Illumina [2153274] (imputed)	N
1148	chr17	73890362	73890363	rs55823223	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q25.1	TRIM65	rs55823223-A	0.1399	2E-41				Affymetrix, Illumina [9900000] (imputed)	N
1148	chr17	73890362	73890363	rs55823223	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	17q25.1	TRIM65	rs55823223-A	NR	3E-43		0.1165	[0.1-0.13] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1148	chr17	73890362	73890363	rs55823223	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	17q25.1	TRIM65	rs55823223-A	0.1414	2E-42		0.1141	[0.098-0.131] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1148	chr17	73890362	73890363	rs55823223	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	17q25.1	TRIM47, TRIM65	rs55823223-A	0.13	1E-8		1.15		Illumina, Perlegen [9113515] (imputed)	N
1148	chr17	73894962	73894963	rs9191	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	MRPL38	rs9191-G	0.014	1E-7				Illumina [Exome array]	N
1148	chr17	73898187	73898188	rs34136221	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	MRPL38	rs34136221-A	0.014	3E-8				Illumina [Exome array]	N
1148	chr17	73906221	73906222	rs3785437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q25.1		rs3785437-T	NR	5E-12		0.0207	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1148	chr17	73922940	73922941	rs2305913	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	FBF1	rs2305913-C	0.374	2E-10				Illumina [Exome array]	N
1149	chr17	73926120	73926121	rs1135889	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	FBF1	rs1135889-A	0.217	8E-8				Illumina [Exome array]	N
1149	chr17	73926120	73926121	rs1135889	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	17q25.1	FBF1	rs1135889-A	0.2235	1E-7		0.0403	[0.025-0.055] unit decrease	NR [8041861] (imputed)	N
1149	chr17	73935232	73935233	rs73355708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.1		rs73355708-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1149	chr17	73943349	73943350	rs2168855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q25.1	ACOX1	rs2168855-T	0.223637	4E-14		0.020336794	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1149	chr17	73949044	73949045	rs2467099	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	17q25.1	ACOX1	rs2467099-T	0.22	3E-8		0.307	[0.19-0.42] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1149	chr17	73949539	73949540	rs1135640	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	17q25.1	ACOX1	rs1135640-G	0.383	2E-9				Illumina [Exome array]	N
1149	chr17	73950215	73950216	rs4788913	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q25.1	ACOX1	rs4788913-G		2E-12		0.283	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1149	chr17	73950215	73950216	rs4788913	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	17q25.1	ACOX1	rs4788913-G		6E-6		0.172	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1149	chr17	73950215	73950216	rs4788913	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q25.1	ACOX1	rs4788913-G		8E-9		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1149	chr17	73950215	73950216	rs4788913	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q25.1	ACOX1	rs4788913-G		8E-7		0.122	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1149	chr17	73954849	73954850	rs12601118	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	17q25.1	ACOX1	rs12601118-A	0.0811	2E-6		0.0593	[0.035-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1149	chr17	73969834	73969835	rs3744032	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	17q25.1	ACOX1	rs3744032-T	0.06	2E-28	(nonenedioate (C9:1-DC))	0.586	[0.48-0.69] unit decrease	Illumina [7750367] (imputed)	N
1149	chr17	74010271	74010272	rs2598420	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	EVPL	rs2598420-C	0.3984	2E-14		0.0449	[0.033-0.056] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1149	chr17	74015395	74015396	rs72865845	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	17q25.1	EVPL	rs72865845-C	0.22	4E-6		0.09	[0.051-0.129] unit increase	Affymetrix, Illumina [7000000] (imputed)	N
1149	chr17	74022212	74022213	rs2665962	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	17q25.1	EVPL	rs2665962-T	0.6603	7E-9		0.0405	[0.027-0.054] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1149	chr17	74037771	74037772	rs2598447	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q25.1	EVPL	rs2598447-?	NR	7E-6	(alpha ketoglutarate)	0.712149	[0.4-1.02] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1150	chr17	74084448	74084449	rs2246623	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q25.1	EXOC7	rs2246623-C	0.553108	2E-10		0.00894181	[0.0062-0.0117] unit increase	Affymetrix [12370749]	N
1150	chr17	74133973	74133974	rs894542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.1		rs894542-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1150	chr17	74163246	74163247	rs72868716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q25.1	RNF157	rs72868716-T	NR	8E-11		0.0331041	[0.023-0.043] unit increase	Affymetrix [319769] (imputed)	N
1150	chr17	74163246	74163247	rs72868716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q25.1	RNF157	rs72868716-T	NR	1E-10		0.0329148	[0.023-0.043] unit increase	Affymetrix [319769] (imputed)	N
1150	chr17	74166150	74166151	rs556389482	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	17q25.1	RNF157	rs556389482-A	NR	5E-7		0.16	unit increase	Affymetrix [7969123] (imputed)	N
1151	chr17	74208852	74208853	rs72868727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q25.1	NR	rs72868727-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1151	chr17	74211207	74211208	rs10512606	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q25.1	NR	rs10512606-C	0.08	4E-16		0.027	[0.021-0.033] unit increase	Affymetrix [2446094] (imputed)	N
1151	chr17	74211207	74211208	rs10512606	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q25.1	NR	rs10512606-C	0.08	5E-8				Affymetrix [2446094] (imputed)	N
1151	chr17	74214275	74214276	rs7214563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.1		rs7214563-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1151	chr17	74221685	74221685	rs148951821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q25.1	RNF157	rs148951821-ATCTT	NR	2E-15		0.042089	[0.032-0.052] unit increase	Affymetrix [319769] (imputed)	N
1151	chr17	74221685	74221685	rs148951821	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q25.1	RNF157	rs148951821-ATCTT	NR	3E-15		0.0418168	[0.031-0.052] unit increase	Affymetrix [319769] (imputed)	N
1151	chr17	74250005	74250006	rs8071545	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q25.1	NR	rs8071545-?	NR	5E-7				Affymetrix [NR]	N
1151	chr17	74255028	74255029	rs8079062	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q25.1	NR	rs8079062-A	0.921	1E-17		0.0285	[0.022-0.035] unit decrease	NR [~ 27400000] (imputed)	N
1151	chr17	74255028	74255029	rs8079062	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q25.1	NA	rs8079062-A	0.9209	2E-12		0.0234	[0.017-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1151	chr17	74255028	74255029	rs8079062	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q25.1	NR	rs8079062-A	0.9209	2E-12		0.0234	[0.017-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1151	chr17	74265552	74265552	rs112334638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	17q25.1	UBALD2	rs112334638-CTCTG	NR	3E-11		0.0362205	[0.026-0.047] unit decrease	Affymetrix [321788] (imputed)	N
1151	chr17	74265552	74265552	rs112334638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.1	UBALD2	rs112334638-CTCTG	NR	8E-12		0.0358391	[0.026-0.046] unit decrease	Affymetrix [321016] (imputed)	N
1151	chr17	74268618	74268619	rs193220	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.1	intergenic	rs193220-T	0.2956	3E-10		0.0189	[0.013-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1151	chr17	74273164	74273165	rs164011	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q25.1	QRICH2	rs164011-?	NR	2E-10		0.0179	[0.013-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1151	chr17	74273164	74273165	rs164011	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	17q25.1	QRICH2	rs164011-A	0.4109	1E-10		0.0213	[0.015-0.028] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1151	chr17	74273164	74273165	rs164011	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	17q25.1	QRICH2	rs164011-A	0.3172	6E-8		0.022486	[0.014-0.031] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1151	chr17	74280990	74280991	rs67017503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q25.1	QRICH2	rs67017503-A	NR	1E-10		0.0320282	[0.022-0.042] unit increase	Affymetrix [319769] (imputed)	N
1151	chr17	74280990	74280991	rs67017503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q25.1	QRICH2	rs67017503-A	NR	2E-10		0.0316727	[0.022-0.041] unit increase	Affymetrix [319769] (imputed)	N
1151	chr17	74281390	74281391	rs77244849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q25.1		rs77244849-C	NR	2E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1151	chr17	74281390	74281391	rs77244849	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q25.1	QRICH2	rs77244849-T	0.683065	1E-11		0.0145292	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
1151	chr17	74283668	74283669	rs164009	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	17q25.1	QRICH2	rs164009-A		4E-8		0.028	[0.018-0.038] mg/dl increase	NR [NR] (imputed)	N
1151	chr17	74283668	74283669	rs164009	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	17q25.1	QRICH2	rs164009-A	0.65	2E-7	(EA)	0.020714285	[0.013-0.028] unit increase	Illumina [1986983] (imputed)	N
1151	chr17	74283668	74283669	rs164009	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	17q25.1	QRICH2, PRPSAP1	rs164009-A	0.61	2E-7		0.028	[0.018-0.038] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1151	chr17	74283768	74283769	rs346785	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	17q25.1	QRICH2	rs346785-T	0.61	1E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [7567914] (imputed)	N
1151	chr17	74290565	74290566	rs164106	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	17q25.1	NR	rs164106-A	0.39	9E-13		0.0133	[0.0096-0.017] unit decrease	NR [NR]	N
1151	chr17	74291438	74291439	rs142971142	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.1	NR	rs142971142-?	NR	7E-6		4.492	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1151	chr17	74307782	74307800	rs771394950	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	17q25.1		rs771394950-?	NR	1E-11		0.323442	[0.23-0.42] unit increase	NR [9800000] (imputed)	N
1151	chr17	74308432	74308433	rs4789278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	17q25.1		rs4789278-A	NR	1E-15		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1152	chr17	74323602	74323603	rs117234581	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	17q25.1	PRPSAP1	rs117234581-A	0.018	8E-6		3.46	[2.01-5.95]	Illumina [3905175] (imputed)	N
1152	chr17	74329482	74329483	rs7503030	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	17q25.1		rs7503030-A	0.792	5E-11				Affymetrix [10369434] (imputed)	N
1152	chr17	74355264	74355265	rs66459581	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	High-grade serous ovarian cancer	537 African ancestry cases, 1,235 African ancestry controls	NA	17q25.1	PRPSAP1	rs66459581-A	0.234	5E-7		1.63	[1.35-1.97]	Illumina [11083029] (imputed)	N
1152	chr17	74375742	74375743	rs12944783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q25.1	SPHK1	rs12944783-G	0.282501	5E-9		0.014319178	[0.0095-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74376152	74376153	rs35481633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.1	SPHK1, PRPSAP1	rs35481633-C	0.272917	3E-12		0.017394383	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74378312	74378312	rs570223913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	SPHK1, PRPSAP1	rs570223913-TG	0.464436	8E-45		0.03223418	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74378312	74378312	rs570223913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.1	SPHK1, PRPSAP1	rs570223913-TG	0.464414	6E-12		0.020593824	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74378312	74378312	rs570223913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.1	SPHK1, PRPSAP1	rs570223913-TG	0.464421	2E-14		0.022531804	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74381554	74381555	rs2247856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.1	SPHK1	rs2247856-A	0.46646	4E-52		0.034771994	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74381554	74381555	rs2247856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.1	SPHK1	rs2247856-A	0.46639	6E-26		0.023331802	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74381554	74381555	rs2247856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q25.1	NR	rs2247856-A	0.458056	3E-15		0.014746	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1152	chr17	74381554	74381555	rs2247856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.1	SPHK1	rs2247856-A	0.4666	2E-27		0.03891775	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74381554	74381555	rs2247856	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.1	SPHK1	rs2247856-A	0.4666	5E-26		0.03782312	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q25.1		rs549579958-C	NR	1E-12		0.1401	[0.1-0.18] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q25.1		rs549579958-C	NR	8E-28		0.2156	[0.18-0.25] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	2E-14		0.122798	[0.09-0.155] unit increase	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	7E-58		0.262407	[0.23-0.29] unit decrease	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	4E-12		0.106576	[0.074-0.139] unit decrease	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	1E-34		0.19733	[0.16-0.23] unit increase	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	2E-43		0.229227	[0.2-0.26] unit decrease	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	17q25.1		rs549579958-?	NR	1E-78		0.302551	[0.27-0.33] unit decrease	NR [9800000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00388200000000005	5E-15		0.14235114	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00386500000000001	1E-35		0.23044008	[0.19-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00386600000000004	1E-34		0.22744249	[0.19-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00386699999999995	1E-16		0.15438877	[0.12-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00387499999999996	2E-30		0.20944059	[0.17-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.00385999999999997	4E-32		0.21987954	[0.18-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.003861	3E-42		0.2519575	[0.22-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.1	SPHK1	rs549579958-C	0.003861	3E-40		0.24576	[0.21-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	3E-22		0.2841344	[0.23-0.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	1E-22		0.2876189	[0.23-0.35] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	5E-14		0.2219553	[0.16-0.28] unit increase	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	7E-22		0.2791145	[0.22-0.34] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	9E-29		0.3263584	[0.27-0.38] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383107	74383108	rs549579958	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.1	SPHK1	rs549579958-C	0.004	2E-29		0.3300637	[0.27-0.39] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74383108	74383109	rs138977514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.1	SPHK1	rs138977514-C	0.00422299999999998	3E-13		0.12719946	[0.093-0.161] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74383108	74383109	rs138977514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs138977514-C	0.00410852	3E-36				Affymetrix, Illumina [23472807] (imputed)	N
1152	chr17	74383108	74383109	rs138977514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q25.1	NR	rs138977514-C	0.004138	6E-38		0.200524	[0.17-0.23] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1152	chr17	74389889	74389890	rs11077815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	17q25.1	UBE2O	rs11077815-C	0.6238	3E-11		0.02463137	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74394775	74394776	rs181558256	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	17q25.1	NR	rs181558256-?	NR	2E-6		0.782	[0.45-1.11] unit decrease	Illumina [at least 560000] (imputed)	N
1152	chr17	74398513	74398514	rs11652985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.1	UBE2O	rs11652985-C	0.466427	1E-15		0.017727645	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74398513	74398514	rs11652985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs11652985-C	0.400289	2E-16				Affymetrix, Illumina [24649327] (imputed)	N
1152	chr17	74398513	74398514	rs11652985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs11652985-C	0.407256	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1152	chr17	74410791	74410792	rs144887234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.1		rs144887234-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1152	chr17	74414558	74414559	rs447921	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	17q25.1	UBE2O	rs447921-?	NR	9E-6			[NR]	Illumina [283437]	N
1152	chr17	74418175	74418176	rs372558	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q25.1	NR	rs372558-G	0.4202	5E-8		0.0213	[0.014-0.029] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1152	chr17	74419176	74419177	rs4789294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q25.1	UBE2O	rs4789294-G	0.216734	2E-14		0.020421734	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74419176	74419177	rs4789294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q25.1	UBE2O	rs4789294-G	0.216715	5E-22		0.025855176	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74419176	74419177	rs4789294	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q25.1	UBE2O	rs4789294-G	0.2163	4E-11		0.02858509	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1152	chr17	74421041	74421042	rs11077816	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q25.1	UBE2O	rs11077816-C	0.202144	8E-16		0.022482662	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1152	chr17	74424292	74424293	rs76160849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAP1L1	5,367 Icelandic ancestry individuals	NA	17q25.1		rs76160849-A	0.03669	4E-17		0.42782	[0.33-0.53] unit decrease	Illumina [7506463] (imputed)	N
1152	chr17	74424292	74424293	rs76160849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.1	UBE2O	rs76160849-A	0.03771	8E-15		0.046230283	[0.035-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74424292	74424293	rs76160849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	UBE2O	rs76160849-A	0.037707	3E-13		0.04346836	[0.032-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74434693	74434694	rs568020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.1	UBE2O	rs568020-A	0.031565	4E-9		0.038183715	[0.025-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74443126	74443127	rs7219520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.1	UBE2O	rs7219520-C	0.013432	5E-18		0.08448813	[0.065-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
1152	chr17	74443126	74443127	rs7219520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.1	UBE2O	rs7219520-C	0.013424	6E-15		0.07634588	[0.057-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1153	chr17	74456212	74456229	rs556197358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.1	AANAT	rs556197358-A	0.650695	4E-14		0.018056924	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr17	74458061	74458062	rs12946216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.1	AANAT	rs12946216-A	0.636314	4E-9		0.013831048	[0.0092-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr17	74460892	74460892	rs386386678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.1	AANAT	rs386386678-ATT	0.669384	4E-13		0.023279853	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr17	74460892	74460892	rs386386678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.1	AANAT	rs386386678-ATT	0.669396	4E-11		0.021088779	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr17	74460892	74460892	rs386386678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.1	AANAT	rs386386678-ATT	0.6703	2E-21		0.0371145	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1153	chr17	74460892	74460892	rs386386678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.1	AANAT	rs386386678-ATT	0.6703	3E-21		0.03687562	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1153	chr17	74461576	74461577	rs3760137	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q25.1		rs3760137-C	NR	4E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1153	chr17	74461576	74461577	rs3760137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.1	AANAT	rs3760137-C	0.480366	3E-13		0.016256424	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1153	chr17	74461576	74461577	rs3760137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs3760137-C	0.4347	2E-13				Affymetrix, Illumina [20825802] (imputed)	N
1153	chr17	74461576	74461577	rs3760137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.1	NR	rs3760137-C	0.479987	1E-15		0.015686	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1153	chr17	74461576	74461577	rs3760137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.1		rs3760137-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1153	chr17	74461714	74461715	rs138415131	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.1	NR	rs138415131-?	NR	1E-6		4.851	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1153	chr17	74463108	74463109	rs3760138	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAP1L1	5,367 Icelandic ancestry individuals	NA	17q25.1		rs3760138-G	0.4498	4E-25		0.197998	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
1153	chr17	74471959	74471960	rs62085020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.1	RHBDF2	rs62085020-A	0.350464	2E-10		0.014798652	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1153	chr17	74471959	74471960	rs62085020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q25.1	NR	rs62085020-A	0.350223	1E-10		0.013545	[0.0094-0.0177] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1153	chr17	74471959	74471960	rs62085020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.1		rs62085020-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1153	chr17	74478575	74478576	rs9915296	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q25.1		rs9915296-A	NR	1E-8		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1153	chr17	74478575	74478576	rs9915296	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.1	RHBDF2	rs9915296-A	0.168306	1E-11		0.0207247	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1153	chr17	74496216	74496217	rs4647858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q25.1		rs4647858-C	NR	1E-8		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1153	chr17	74540916	74540917	rs895157	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	17q25.1	PRCD	rs895157-G	NR	1E-6		1.2	[1.11-1.29]	Illumina [NR]	N
1153	chr17	74540916	74540917	rs895157	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy	2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	17q25.1	PRCD	rs895157-?	NR	1E-6		1.23	[1.13-1.34]	Illumina [5768242] (imputed)	N
1153	chr17	74562291	74562292	rs139401613	33627384	Matejcic M	2021-02-24	Cancer Epidemiol Biomarkers Prev	Rare variants in the DNA repair pathway and the risk of colorectal cancer.	Colorectal cancer	2,327 European ancestry cases, 2,966 European ancestry  controls	NA	17q25.1	ST6GALNAC2	rs139401613-?	NR	1E-6				Illumina [142390]	N
1154	chr17	74647975	74647976	rs9889862	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q25.1	NR	rs9889862-?	NR	4E-6				Affymetrix [NR]	N
1154	chr17	74661435	74661436	rs11077850	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	17q25.1	NR	rs11077850-C	0.18	2E-6			NR	Illumina [7289516] (imputed)	N
1154	chr17	74661435	74661436	rs11077850	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	17q25.1	NR	rs11077850-C	0.18	1E-6		1.38	[1.21-1.58]	Illumina [7289516] (imputed)	N
1154	chr17	74674856	74674857	rs9900613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.1	MXRA7	rs9900613-T	0.431	2E-20	(Matrix-remodeling-associated protein 7, MXRA7.8005.1.3)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1154	chr17	74684079	74684080	rs2286589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q25.1		rs2286589-A	NR	8E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1154	chr17	74684857	74684858	rs7219390	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q25.1	MXRA7	rs7219390-T	0.575	3E-8		0.1067	[0.069-0.145] mmHg increase	Affymetrix [NR] (imputed)	N
1154	chr17	74686808	74686809	rs35504735	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q25.1	MXRA7	rs35504735-A	0.5589	8E-12		0.1178	[0.084-0.152] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1154	chr17	74691635	74691636	rs11077857	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11077857-G	0.168416	3E-15		0.091176	[0.067-0.115] increase	Affymetrix [11014269] (imputed)	N
1154	chr17	74696445	74696446	rs7211963	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q25.1	NR	rs7211963-?	NR	4E-7		0.0088643	[0.0054-0.0123] unit increase	Affymetrix [805426] (imputed)	N
1154	chr17	74697117	74697118	rs1558251	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MXRA7	5,366 Icelandic ancestry individuals	NA	17q25.1		rs1558251-G	0.464	5E-53		0.2734	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
1154	chr17	74697117	74697118	rs1558251	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.1	MXRA7	rs1558251-A	0.5184375	1E-36	(MXRA7, 8005_1_3)	0.29694396	[0.25-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1154	chr17	74710127	74710128	rs2240775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q25.1		rs2240775-C	NR	3E-10		0.0136	[0.0093-0.0179] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1154	chr17	74710127	74710128	rs2240775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q25.1	JMJD6	rs2240775-C	0.470783	2E-11		0.014757309	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1154	chr17	74710127	74710128	rs2240775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.1	NR	rs2240775-C	0.438304	2E-15				Affymetrix, Illumina [23114412] (imputed)	N
1154	chr17	74710127	74710128	rs2240775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q25.1	NR	rs2240775-C	0.470287	4E-15		0.015223	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1154	chr17	74710127	74710128	rs2240775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.1		rs2240775-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1155	chr17	74720876	74720877	rs2005827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q25.1	Intergenic	rs2005827-A	0.6148	2E-8	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1155	chr17	74733402	74733403	rs3744061	23776548	Sim X	2013-06-12	PLoS One	Genetic loci for retinal arteriolar microcirculation.	Retinal arteriolar caliber	18,722 European ancestry individuals	3,939 European ancestry individuals	17q25.1	SFRS2, MFSD11, JMJD6, MXRA7	rs3744061-G	0.44	2E-10		0.86	[0.61-1.11] unit decrease	Illumina [2137729] (imputed)	N
1156	chr17	74878258	74878259	rs571264	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	17q25.2	NA	rs571264-A	0.3693	1E-6		0.2397	[0.1307-0.4394]	Illumina [243345]	N
1156	chr17	74895036	74895037	rs76269467	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	17q25.2	MGAT5B	rs76269467-T	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1156	chr17	74898299	74898300	rs487952	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	17q25.2		rs487952-A	0.5656	4E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1156	chr17	74930365	74930366	rs4789378	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	17q25.2	MGAT5B	rs4789378-?	0.352	9E-6	(same direction)	1.0752687	[1.04-1.11]	Illumina [up to 6000000] (imputed)	N
1156	chr17	74971375	74971376	rs56122323	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	17q25.2	MGAT5B, LOC105371899	rs56122323-?	NR	4E-7				Illumina [1539908]	N
1157	chr17	74988443	74988444	rs7221059	24383474	Manichaikul A	2014-01-02	Am J Respir Crit Care Med	Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study.	Pulmonary emphysema	2,587 European ancestry individuals, 2,510 African American individuals, 2,113 Hispanic individuals, 704 Chinese ancestry individuals	6,023 European ancestry individuals	17q25.2	MGAT5B	rs7221059-C	0.974	3E-8	(Chinese)	0.328	[0.21-0.44] unit decrease	Affymetrix [897981]	N
1157	chr17	74997896	74997897	rs4789400	22823124	Verweij KJ	2012-07-24	Addict Biol	The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.	Cannabis use (initiation)	10,091 individuals from 4,622 families	NA	17q25.2	MGAT5B	rs4789400-A	0.08	5E-6		0.069	unit decrease	Illumina [~ 2400000] (imputed)	N
1157	chr17	75004212	75004213	rs11653989	22683750	Sinner MF	2012-06-06	Heart Rhythm	A meta-analysis of genome-wide association studies of the electrocardiographic early repolarization pattern.	Early cardiac repolarization	7,482 European ancestry individuals	7,151 European ancestry individuals	17q25.2	MGAT5B, SEC14L	rs11653989-T	0.917	3E-6		1.61	[1.32-2.0]	Affymetrix, Illumina [2523555] (imputed)	N
1157	chr17	75095241	75095242	rs2292852	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.2		rs2292852-?	NR	2E-11		0.0143346	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1158	chr17	75114704	75114705	rs17533156	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	17q25.2	SEC14L1	rs17533156-T	NR	8E-6		4.475	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1158	chr17	75211207	75211208	rs3744064	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	17q25.3	SEC14L1	rs3744064-?	0.03053	7E-7	(PAL6)			Illumina [475971]	N
1159	chr17	75243942	75243943	rs11077897	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	17q25.3	NR	rs11077897-G	NR	7E-6		0.01047	[0.0059-0.015] unit decrease	Illumina [~ 540852]	N
1159	chr17	75257986	75257987	rs12953285	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	17q25.3	NR	rs12953285-C	NR	3E-6	(phenotype 1)	5.88	[NR]	Illumina [> 8000000] (imputed)	N
1159	chr17	75313334	75313335	rs4788985	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	17q25.3	SEPT9	rs4788985-G	0.492	9E-6		8.347	[NR] unit increase	Illumina [527829]	N
1159	chr17	75316879	75316880	rs1436138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q25.3		rs1436138-G	NR	4E-14		0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q25.3		rs1436138-G	NR	4E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q25.3		rs1436138-G	NR	5E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q25.3	SEPT9	rs1436138-G	0.360102	5E-11		0.015436537	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	17q25.3	SEPT9	rs1436138-G	0.359306	4E-10		0.051573776	[0.035-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	SEPT9	rs1436138-A	0.64306	5E-28		0.0212874	[0.017-0.025] unit increase	NR [13737936] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q25.3		rs1436138-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs1436138-?	NR	2E-28				NR [~ 8900000] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q25.3		rs1436138-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1159	chr17	75316879	75316880	rs1436138	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs1436138-?	NR	5E-22		0.0196665	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1159	chr17	75317299	75317300	rs57927100	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q25.3	SEPT9	rs57927100-G	0.258	4E-10		0.31	[0.21-0.41] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1159	chr17	75317299	75317300	rs57927100	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	17q25.3	SEPT9	rs57927100-G	0.258	1E-8	(EA, initial)	0.489	[0.32-0.66] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1159	chr17	75319799	75319800	rs73997493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs73997493-?	NR	4E-17		0.0282938	[0.021-0.035] unit increase	Affymetrix [20259828] (imputed)	N
1159	chr17	75319799	75319800	rs73997493	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q25.3	SEPT9	rs73997493-C	0.912755	1E-6	(men)	0.0443006	[0.026-0.062] unit increase	NR [17166351] (imputed)	N
1159	chr17	75319799	75319800	rs73997493	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q25.3	SEPT9	rs73997493-C	0.91217	7E-13		0.0414762	[0.03-0.053] unit increase	NR [17166351] (imputed)	N
1159	chr17	75319799	75319800	rs73997493	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q25.3	SEPT9	rs73997493-C	0.911658	5E-6	(women)	0.0366381	[0.021-0.053] unit increase	NR [17166351] (imputed)	N
1159	chr17	75330209	75330210	rs9896100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q25.3		rs9896100-A	NR	2E-8		0.0171	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1159	chr17	75351422	75351423	rs453370	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	17q25.3	SEPT9	rs453370-T	0.246	9E-7		0.136	[0.081-0.191] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
1160	chr17	75367326	75367327	rs312872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs312872-C	NR	2E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1160	chr17	75369577	75369578	rs7217986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q25.3		rs7217986-C	NR	1E-16		0.0178	[0.014-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1160	chr17	75369577	75369578	rs7217986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q25.3	SEPT9	rs7217986-C	0.48922	3E-12		0.015478268	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1160	chr17	75369577	75369578	rs7217986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs7217986-C	0.421299	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
1160	chr17	75370273	75370274	rs3987888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q25.3	RP11-936I5.1, SEPT9	rs3987888-C	0.49004	6E-9		0.012872877	[0.0085-0.0172] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75370467	75370468	rs93075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	RP11-936I5.1	rs93075-G	0.694044	2E-19		0.022058487	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75370467	75370468	rs93075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	RP11-936I5.1	rs93075-G	0.694055	6E-9		0.017840356	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75371266	75371267	rs312824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	RP11-936I5.1	rs312824-T	0.701088	2E-34		0.029866863	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.481949	6E-32		0.02628162	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.481951	1E-31		0.02613013	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q25.3		rs4789452-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.483	1E-12		0.02547249	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.483	3E-13		0.02621624	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.4831	2E-14		0.02740594	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr17	75372849	75372850	rs4789452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	RP11-936I5.1	rs4789452-A	0.483	5E-15		0.02808327	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1160	chr17	75374530	75374531	rs9909247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs9909247-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1160	chr17	75375880	75375881	rs11658815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	SEPT9	rs11658815-A	0.483095	1E-9		0.017086893	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1160	chr17	75382038	75382039	rs73373322	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	17q25.3	NR	rs73373322-C	NR	4E-7		0.185	[0.11-0.26] unit increase	Illumina [27700000] (imputed)	N
1160	chr17	75382038	75382039	rs73373322	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	17q25.3	NR	rs73373322-C	NR	4E-7		0.304	[0.19-0.42] unit increase	Illumina [27700000] (imputed)	N
1160	chr17	75386908	75386909	rs1656794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q25.3		rs1656794-G	0.698807	1E-8		0.0125652	[0.0082-0.0169] unit increase	Illumina [13479295] (imputed)	N
1160	chr17	75386908	75386909	rs1656794	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q25.3	NR	rs1656794-G	0.7162	4E-9		0.0311	[0.021-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1160	chr17	75386908	75386909	rs1656794	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q25.3	NR	rs1656794-?	NR	1E-10		0.020197395	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
1160	chr17	75398497	75398498	rs34587622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q25.3		rs34587622-T	0.12	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
1160	chr17	75398497	75398498	rs34587622	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	SEPT9	rs34587622-C	0.88759	1E-11		0.0198267	[0.014-0.026] unit increase	NR [13737936] (imputed)	N
1160	chr17	75398497	75398498	rs34587622	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs34587622-?	NR	8E-10		0.0200296	[0.014-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1160	chr17	75400099	75400100	rs892961	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls		SEPT9	rs892961-?	0.59	9E-6	(no asthma)	1.18		Affymetrix, Illumina [up to 2500000] (imputed)	N
1160	chr17	75495064	75495065	rs448203	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	17q25.3		rs448203-T	0.606331	3E-26		0.0944099	[0.076-0.113] increase	Affymetrix [11014269] (imputed)	N
1160	chr17	75495064	75495065	rs448203	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	17q25.3	SEPT9	rs448203-?	NA	2E-10		1.84	[1.27-2.41] unit increase	Affymetrix [5541230] (imputed)	N
1160	chr17	75495064	75495065	rs448203	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q25.3	MGAT5B, SEP9, TNRC6C	rs448203-?		4E-14				Affymetrix, Illumina [NR] (imputed)	N
1160	chr17	75495064	75495065	rs448203	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q25.3	SEPT9	rs448203-T	0.6054	2E-27		0.1506	[0.12-0.18] unit increase	Affymetrix [~ 11900000] (imputed)	N
1160	chr17	75495396	75495397	rs9038	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	17q25.3	SEPT9	rs9038-C	NR	4E-15	(male)	0.9584052	[0.95-0.97]	Affymetrix [9869154] (imputed)	N
1160	chr17	75495396	75495397	rs9038	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	17q25.3	SEPT9	rs9038-C	NR	9E-28		0.96	[0.95-0.97]	Affymetrix [9869154] (imputed)	N
1160	chr17	75495396	75495397	rs9038	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	17q25.3	NR	rs9038-?	NR	2E-6		0.0993656	[0.059-0.14] unit increase	NR [13958389] (imputed)	N
1160	chr17	75495396	75495397	rs9038	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	17q25.3	NR	rs9038-?	NR	2E-6		0.0858738	[0.051-0.121] unit decrease	NR [13958389] (imputed)	N
1160	chr17	75495396	75495397	rs9038	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q25.3	NR	rs9038-T		4E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
1160	chr17	75495396	75495397	rs9038	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q25.3	SEPT9	rs9038-T	0.6101	2E-23		0.137	[0.11-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
1161	chr17	75554354	75554355	rs4294874	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q25.3	FLJ45079	rs4294874-?	NR	9E-6	(CE 20:3)	0.20742106	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1161	chr17	75594163	75594164	rs1972597	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	17q25.3	NR	rs1972597-G	0.36	1E-7		1.61	[1.35-1.93]	Illumina [714494]	N
1161	chr17	75612642	75612643	rs8076703	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	17q25.3	NR	rs8076703-C	0.295865	1E-12		0.0238709	[0.017-0.03] unit increase	Affymetrix [16577424] (imputed)	N
1162	chr17	75631593	75631593	rs397710597	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17q25.3	RP11-13K12.6	rs397710597-T	0.2347	6E-6		0.0493	[0.028-0.071] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1162	chr17	75639966	75639967	rs2077613	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder x sex interaction	2,774 European ancestry cases, 7,096 European ancestry controls	NA	17q25.3	NR	rs2077613-?	NR	4E-6				NR [~ 5500000] (imputed)	N
1162	chr17	75640392	75640393	rs2077502	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	17q25.3	NR	rs2077502-?	NR	2E-51				Affymetrix [NR]	N
1162	chr17	75701696	75701697	rs9906155	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	17q25.3	SEPT9	rs9906155-T	0.91	9E-6		0.05	[0.02-0.07] unit increase	Affymetrix [2073674] (imputed)	N
1162	chr17	75743838	75743839	rs56396930	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	17q25.3		rs56396930-T	NR	9E-6		0.1079	[0.06-0.155] unit increase	NR [4841651] (imputed)	N
1163	chr17	75781401	75781402	rs8075300	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	17q25.3	NR	rs8075300-C	0.465	5E-6		0.27	[0.15-0.39] unit decrease	Illumina [9469131] (imputed)	N
1163	chr17	75805996	75805997	rs72900470	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	17q25.3		rs72900470-?	NR	5E-6		0.431311	[0.25-0.62] unit increase	Illumina [9875426] (imputed)	N
1163	chr17	75821700	75821701	rs111537197	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	17q25.3	LOC100132174, FLJ45079	rs111537197-C	0.044726731	7E-6		1.2532552	[1.136090528-1.382503197]	Illumina [10439017] (imputed)	N
1163	chr17	75856941	75856942	rs56237759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q25.3	Intergenic	rs56237759-A	0.7887	4E-13	(MTAG)	0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1163	chr17	75858705	75858706	rs735658	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	17q25.3	SEPT9, TNRC6C	rs735658-C	0.91	6E-7	(AA)	3.448276	[2.13-5.56]	Affymetrix [up to 9627525] (imputed)	N
1163	chr17	75860341	75860342	rs60945451	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q25.3	Intergenic	rs60945451-T	0.1362	5E-15	(MTAG)	0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1163	chr17	75861270	75861271	rs62078489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q25.3	Intergenic	rs62078489-A	0.7574	6E-13		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1163	chr17	75861270	75861271	rs62078489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q25.3	Intergenic	rs62078489-A	0.7572	1E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1163	chr17	75864804	75864805	rs68145588	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q25.3		rs68145588-T	0.1395	8E-10		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1163	chr17	75864804	75864805	rs68145588	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q25.3	Intergenic	rs68145588-T	0.1395	9E-12	(MTAG)	0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1164	chr17	75894685	75894686	rs79702843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs79702843-G	NR	2E-17		0.0487	[0.037-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr17	75903450	75903451	rs146206119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q25.3		rs146206119-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1164	chr17	75905780	75905781	rs78057054	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q25.3	NR	rs78057054-T	0.104706	2E-11		0.0338911	[0.024-0.044] unit decrease	NR [19129689] (imputed)	N
1164	chr17	75920121	75920122	rs72892301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q25.3	NR	rs72892301-?	NR	3E-6		0.0082028	[0.0048-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1164	chr17	75944649	75944650	rs16970672	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	17q25.3	AC015804.1	rs16970672-?	0.29	2E-6		1.29	[NR]	Illumina [1847262] (imputed)	N
1164	chr17	75995828	75995829	rs8081039	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.3	NA	rs8081039-T	0.0605	6E-10		0.023	[0.016-0.03] unit increase	NR [~ 27400000] (imputed)	N
1164	chr17	76000572	76000573	rs8074332	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q25.3	Intergenic	rs8074332-T	0.6664	7E-9	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1164	chr17	76004473	76004474	rs17552197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs17552197-T	NR	4E-13		0.0754	[0.055-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1164	chr17	76011685	76011686	rs78059684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs78059684-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1165	chr17	76026670	76026671	rs9889827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q25.3	Intergenic	rs9889827-T	0.6446	6E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1165	chr17	76057741	76057742	rs2311441	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q25.3	NR	rs2311441-?	NR	3E-6		0.0083029	[0.0048-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1165	chr17	76109072	76109073	rs2253277	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	17q25.3	TMC6, TNRC6C-AS1, TNRC6C	rs2253277-?	NR	1E-6				Illumina [1365181]	N
1165	chr17	76110517	76110518	rs2613514	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	17q25.3	TNRC6C	rs2613514-G	0.22	3E-6	(AA-triglyceride response)	20.12	[11.65-28.59] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1165	chr17	76114853	76114854	rs2613518	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs2613518-G	NR	5E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76115478	76115479	rs3841687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs3841687-C	NR	2E-12		0.0568	[0.041-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76118886	76118887	rs1474865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	TMC6	rs1474865-C	0.117356	2E-18		0.030914826	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76118886	76118887	rs1474865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	TMC6	rs1474865-C	0.117355	2E-10		0.022427065	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76119292	76119293	rs3794738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs3794738-T	NR	4E-32		0.0539	[0.045-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76119292	76119293	rs3794738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	TMC6	rs3794738-T	0.078105	5E-11		0.02768015	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76119292	76119293	rs3794738	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	TMC6	rs3794738-T	0.0796	7E-14		0.04958273	[0.037-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76119292	76119293	rs3794738	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	TMC6	rs3794738-T	0.0796	1E-11		0.04477281	[0.032-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76120064	76120065	rs2613522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q25.3		rs2613522-G	NR	5E-8		0.0098	[0.0063-0.0133] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1165	chr17	76120064	76120065	rs2613522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2613522-G	0.305812	6E-12				Affymetrix, Illumina [24588908] (imputed)	N
1165	chr17	76120064	76120065	rs2613522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q25.3	NR	rs2613522-G	0.27686	5E-12		0.015056	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1165	chr17	76120064	76120065	rs2613522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	17q25.3	NR	rs2613522-A	0.640822	8E-20		0.046054	[0.036-0.056] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.0849	1E-15		0.032687332	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.084902	1E-10		0.02623854	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.08488	2E-10		0.025940912	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.08496	3E-10		0.026018042	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.084905	3E-10		0.038376	[0.031-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.084899	2E-17		0.03466641	[0.027-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121317	76121318	rs12449858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	TMC6	rs12449858-A	0.084902	2E-14		0.031155024	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	17q25.3		rs2748427-G	0.189367	4E-19		0.0355791	[0.028-0.043] unit increase	Illumina [13479135] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	17q25.3		rs2748427-G	0.191332	8E-15		0.041543	[0.031-0.052] unit increase	Illumina [13466143] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17q25.3	TMC6	rs2748427-A	0.781	1E-48		0.0307	[0.026-0.035] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219733	8E-75				Affymetrix, Illumina [24332387] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219489	1E-60		0.038575	[0.034-0.043] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	17q25.3	NR	rs2748427-A	0.806452	1E-18		0.040776	[0.032-0.05] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.220225	6E-91				Affymetrix, Illumina [24246363] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219452	4E-75		0.042371	[0.038-0.047] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219935	1E-56				Affymetrix, Illumina [20825802] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.21948	3E-48		0.03413	[0.03-0.039] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219934	4E-17				Affymetrix, Illumina [24653286] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2748427-G	0.219398	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q25.3	TMC6	rs2748427-G		3E-13		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs2748427-?	NR	5E-58				NR [~ 8900000] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.3		rs2748427-?	NR	6E-50				NR [~ 8900000] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	17q25.3	TMC6	rs2748427-?	NR	7E-14		0.07799	[0.058-0.098] unit increase novel	Illumina [6108953] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	17q25.3	TMC6, TMC8	rs2748427-G	0.179	5E-20		0.0573	[0.045-0.07] unit increase	Illumina [7135436] (imputed)	N
1165	chr17	76121863	76121864	rs2748427	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q25.3	TMC6	rs2748427-G	0.2187	2E-16		0.03541677	[0.027-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76122077	76122078	rs761772	28887542	Prins BP	2017-09-08	Sci Rep	Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations.	Glycated hemoglobin levels	5,288 European ancestry women, 4,148 European ancestry men	9,888 European ancestry individuals, 16,013 individuals	17q25.3	TMC6	rs761772-C	0.12	5E-9		0.05	[0.030-0.070] Mmol/mol increase	Illumina [at least 23756480] (imputed)	N
1165	chr17	76123527	76123528	rs3813026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs3813026-G	NR	8E-26		0.0498	[0.041-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q25.3		rs558567978-A	0.777	7E-44		0.19	[0.16-0.21] % increase	Affymetrix [NR] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222382	1E-42		0.037196063	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222338	5E-19		0.02435932	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222342	1E-11		0.018537737	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222438	4E-74		0.051085882	[0.046-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222313	1E-30		0.031763803	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.22233	3E-53		0.0437524	[0.039-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222366	4E-41		0.035953183	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222377	7E-15		0.020889038	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q25.3	TMC6	rs558567978-AG	0.222372	2E-11		0.018027415	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q25.3	NR	rs558567978-I	0.222413	2E-16		0.020457	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1165	chr17	76124810	76124810	rs558567978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q25.3	NR	rs558567978-I	0.2224	7E-12		0.017049	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	2E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	3E-59		0.0352	[0.031-0.04] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	9E-11		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	3E-74		0.0458	[0.041-0.051] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	8E-50		0.0374	[0.033-0.042] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	1E-191		0.0748	[0.07-0.08] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	1E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1165	chr17	76124811	76124811	rs3834968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q25.3		rs3834968-AG	NR	4E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	17q25.3		rs2748425-C	0.141443	3E-23		0.0521447	[0.042-0.062] unit decrease	Illumina [13476266] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	17q25.3		rs2748425-C	0.141424	2E-16		0.0436131	[0.033-0.054] unit decrease	Illumina [13476299] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	TMC6	rs2748425-C	0.191499	2E-16		0.023545137	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	TMC6	rs2748425-C	0.1905	1E-20		0.04295733	[0.034-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.3	TMC6	rs2748425-C	0.1905	1E-13		0.03416776	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q25.3	TMC6	rs2748425-C	0.1904	3E-19		0.0408726	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76124845	76124846	rs2748425	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	TMC6	rs2748425-C	0.1905	6E-17		0.03860149	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	17q25.3	TMC6	rs2748424-C	0.8074	3E-14		0.043	[0.032-0.054] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	17q25.3	NR	rs2748424-G	NR	6E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	TMC6	rs2748424-G	0.188977	4E-21		0.02754304	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	TMC6	rs2748424-G	0.189049	1E-23		0.029093431	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	17q25.3	NR	rs2748424-C	0.863608	2E-14		0.047984	[0.036-0.06] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	17q25.3	TMC6	rs2748424-G	0.179	1E-16		0.051	[0.039-0.063] % increase	Illumina [11510031] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	17q25.3	TMC6	rs2748424-?	NR	4E-15		0.05188	[0.039-0.065] unit increase novel	Illumina [6108953] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	17q25.3	TMC6	rs2748424-?	NR	6E-14		0.04962	[0.037-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	17q25.3	TMC6	rs2748424-?	NR	7E-12		0.0453	[0.032-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q25.3	TMC6	rs2748424-G	0.1893	4E-16		0.03725867	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76124864	76124865	rs2748424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	TMC6	rs2748424-G	0.1892	9E-22		0.0443136	[0.035-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76125194	76125196	rs200350733	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	17q25.3	TMC6	rs200350733-A	0.2329	5E-11		0.0306	[0.021-0.04] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1165	chr17	76126093	76126094	rs454139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q25.3	NR	rs454139-C	NR	6E-12		0.0249	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76126093	76126094	rs454139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs454139-C	NR	4E-146		0.0952	[0.088-0.102] unit increase	Affymetrix [9000000] (imputed)	N
1165	chr17	76126203	76126204	rs429216	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	17q25.3		rs429216-T	0.1522	5E-13		0.0998	[0.073-0.127] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1165	chr17	76126203	76126204	rs429216	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	17q25.3		rs429216-T	0.14880000000000004	1E-8		0.1182	[0.078-0.159] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1165	chr17	76126203	76126204	rs429216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	TMC6	rs429216-G	0.15248	2E-55		0.050499946	[0.044-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76126203	76126204	rs429216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs429216-T	0.846861	2E-57				Affymetrix, Illumina [22063850] (imputed)	N
1165	chr17	76126203	76126204	rs429216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.3	NR	rs429216-T	0.847549	5E-57		0.04411	[0.039-0.05] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1165	chr17	76126203	76126204	rs429216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs429216-?	NR	8E-49				NR [~ 8900000] (imputed)	N
1165	chr17	76126203	76126204	rs429216	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q25.3	TMC6	rs429216-G	NR	2E-12		0.0396972	[0.029-0.051] unit increase	Affymetrix [16832071] (imputed)	N
1165	chr17	76126606	76126607	rs453922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	TMC6	rs453922-C	0.7212	8E-13		0.03007587	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76127430	76127431	rs383603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	TMC6, TMC8	rs383603-C	0.756123	1E-12		0.019753575	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76127430	76127431	rs383603	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	17q25.3	HBM, HBA2	rs383603-?	NR	8E-12	(Hispanic/Latino)	0.1080716	[0.077-0.139] unit increase	Illumina [22871999] (imputed)	N
1165	chr17	76127430	76127431	rs383603	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	17q25.3	HBM, HBA2	rs383603-?	NR	3E-12		0.108	[0.079-0.137] unit increase	Illumina [22871999] (imputed)	N
1165	chr17	76130574	76130575	rs7208422	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (cold-storage)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	17q25.3	TMC8, TMC6	rs7208422-?	NR	1E-8		0.004	unit decrease	NR [14100000] (imputed)	N
1165	chr17	76130574	76130575	rs7208422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs7208422-T	NR	2E-12		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1165	chr17	76130986	76130987	rs112802399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs112802399-T	NR	5E-26		0.0718	[0.058-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76133355	76133356	rs150546646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs150546646-A	NR	3E-9		0.2698	[0.18-0.36] unit increase	Affymetrix [9000000] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs144120533-T	NR	8E-63		0.3688	[0.33-0.41] unit decrease	Affymetrix [9000000] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00309199999999998	5E-31		0.23243135	[0.19-0.27] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00309199999999998	4E-24		0.20329376	[0.16-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00309599999999999	1E-23		0.20042469	[0.16-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00308200000000003	4E-10		0.124325365	[0.085-0.163] unit decrease	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00307900000000005	2E-17		0.179044	[0.14-0.22] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00307900000000005	4E-12		0.13768993	[0.099-0.177] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00309400000000004	5E-27		0.21536337	[0.18-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	TMC8	rs144120533-T	0.00309400000000004	7E-23		0.19730301	[0.16-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	TMC8	rs144120533-T	0.0031	2E-10		0.218292	[0.15-0.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	TMC8	rs144120533-T	0.0031	3E-11		0.22822	[0.16-0.3] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76134466	76134467	rs144120533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	TMC8	rs144120533-T	0.0031	4E-10		0.2145151	[0.15-0.28] unit increase	Affymetrix [~ 2500000] (imputed)	N
1165	chr17	76135411	76135412	rs17773854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	TMC8	rs17773854-T	0.45763	2E-20		0.021670334	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1165	chr17	76137476	76137477	rs2871647	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	17q25.3	NR	rs2871647-?	NR	3E-6		0.043	[0.025-0.061] unit increase novel	Illumina [6108953] (imputed)	N
1166	chr17	76164403	76164404	rs9900387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs9900387-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1166	chr17	76165103	76165104	rs9908045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	SYNGR2	rs9908045-A	0.514739	1E-12		0.015883526	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76165547	76165548	rs3794742	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Lung cancer	6,877 East Asian ancestry never smoker cases, 6,277 East Asian ancestry never smoker controls	5,878 East Asian ancestry never smoker cases, 7,046 East Asian ancestry never smoker controls	17q25.3	SYNGR2	rs3794742-?	0.483	4E-7		1.098901	[1.06-1.14]	Affymetrix, Illumina [7564751] (imputed)	N
1166	chr17	76165547	76165548	rs3794742	26732429	Wang Z	2016-01-04	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.	Adenocarcinoma	Up to 5,744 Chinese ancestry cases, up to 4,817 Chinese ancestry controls, up to 1,133 Japanese ancestry cases, up to 1,460 Japanese ancestry controls	Up to 4,647 Chinese ancestry cases, up to 4,099 Chinese ancestry controls, up to 1,231 Japanese ancestry cases, up to 2,947 Japanese ancestry controls	17q25.3	SYNGR2	rs3794742-?	0.483	1E-6		1.098901	[1.06-1.15]	Affymetrix, Illumina [7564751] (imputed)	N
1166	chr17	76166195	76166196	rs870355	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	17q25.3	AFMID	rs870355-?	NR	2E-6		1.123	NR	Illumina [8966411] (imputed)	N
1166	chr17	76178512	76178513	rs113409965	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q25.3	TK1	rs113409965-G	0.0182718730280844	7E-6	(C_Deltaproteobacteria_HB)	0.919235	[0.52-1.32] unit decrease	Illumina [7711310] (imputed)	N
1166	chr17	76183042	76183043	rs1071664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	TK1	rs1071664-G	0.368986	1E-9		0.014363792	[0.0097-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	TK1	rs144204502-T	0.012672	1E-55		0.15995763	[0.14-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	TK1	rs144204502-T	0.0126810000000001	2E-54		0.15692163	[0.14-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	TK1	rs144204502-T	0.012707	5E-38		0.13127603	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	TK1	rs144204502-T	0.012694	1E-37		0.128518	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3	TK1	rs144204502-T	0.012691	1E-29		0.112858266	[0.093-0.132] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	17q25.3	TK1	rs144204502-T	0.014161	5E-6		0.089579	[0.051-0.128] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q25.3	TK1	rs144204502-T	NR	5E-12		0.119641	[0.084-0.155] unit decrease	Affymetrix [16832071] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q25.3	TK1	rs144204502-T	0.0129	3E-15		0.127707	[0.096-0.159] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q25.3	TK1	rs144204502-T	0.0129	1E-12		0.1143567	[0.083-0.146] unit increase	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76183232	76183233	rs144204502	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q25.3	TK1	rs144204502-T	0.0129	3E-10		0.1017704	[0.07-0.133] unit increase	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76187107	76187108	rs77585764	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q25.3	AFMID	rs77585764-G	0.984463	5E-12	(N-formylanthranilic acid)	0.643	[0.46-0.83] unit decrease	Illumina [13039987] (imputed)	N
1166	chr17	76187107	76187108	rs77585764	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs77585764-C	0.02265	3E-8	(SPRYD4)	0.1094	NR unit increase	Illumina [1671387] (imputed)	N
1166	chr17	76194879	76194880	rs7221200	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q25.3	AFMID	rs7221200-A	0.297957703461579	5E-7	(G_Collinsella_RNT)	0.130494	[0.079-0.181] unit increase	Illumina [7711310] (imputed)	N
1166	chr17	76198586	76198587	rs72897838	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	17q25.3	AFMID	rs72897838-G	0.1	2E-13	(X - 24455)	0.331	[0.24-0.42] unit increase	Illumina [7750367] (imputed)	N
1166	chr17	76198586	76198587	rs72897838	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	17q25.3	AFMID	rs72897838-G	0.1	1E-27	(N-formylanthranilic acid)	0.505	[0.41-0.6] unit increase	Illumina [7750367] (imputed)	N
1166	chr17	76200964	76200965	rs72897843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs72897843-T	NR	1E-11		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr17	76200964	76200965	rs72897843	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q25.3	AFMID	rs72897843-C	0.946383	4E-43	(N-formylanthranilic acid)	0.7	[0.6-0.8] unit decrease	Illumina [13039987] (imputed)	N
1166	chr17	76200964	76200965	rs72897843	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs72897843-T	0.09059	4E-12	(AFMID)	0.008368	NR unit decrease	Illumina [1671387] (imputed)	N
1166	chr17	76202816	76202817	rs114080902	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	17q25.3	AFMID	rs114080902-?	NR	2E-13	(N-formylanthranilic acid)	1.0	[NR] unit increase	Illumina [14760605] (imputed)	N
1166	chr17	76219590	76219591	rs2071214	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	17q25.3	NR	rs2071214-G	0.054	8E-6	(Non-substance related behavioral disinhibition)			Illumina [527829]	N
1166	chr17	76219944	76219945	rs17879146	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	17q25.3	BIRC5	rs17879146-T	0.99	1E-6	(Age 20-60 years)	0.2549	[0.15-0.36] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1166	chr17	76228570	76228571	rs11868709	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	17q25.3	TMEM235	rs11868709-C	0.714	7E-11				NR [509413]	N
1166	chr17	76235216	76235217	rs61742094	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	17q25.3	TMEM235	rs61742094-C	0.989175	1E-10	(N-formylanthranilic acid)	0.705	[0.49-0.92] unit decrease	Illumina [13039987] (imputed)	N
1166	chr17	76241787	76241788	rs11658674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q25.3		rs11658674-C	NR	7E-11		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1166	chr17	76241787	76241788	rs11658674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs11658674-C	0.248659	2E-18				Affymetrix, Illumina [19872809] (imputed)	N
1166	chr17	76241787	76241788	rs11658674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q25.3	NR	rs11658674-C	0.291313	1E-18		0.019502	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1166	chr17	76241787	76241788	rs11658674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.3		rs11658674-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1166	chr17	76242632	76242632	rs560755235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	THA1P	rs560755235-CT	0.283956	5E-32		0.029819023	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76243452	76243453	rs72901750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q25.3	THA1P	rs72901750-T	0.291223	3E-9		0.014569075	[0.0098-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.3	THA1P	rs72901753-C	0.326404	2E-12		0.016599987	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	THA1P	rs72901753-C	0.326357	2E-19		0.021644041	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	THA1P	rs72901753-C	0.326369	8E-17		0.019964302	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	THA1P	rs72901753-C	0.326332	3E-31		0.027717514	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q25.3	NR	rs72901753-C	0.326884	1E-11		0.014526	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1166	chr17	76244282	76244283	rs72901753	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	THA1P	rs72901753-C	0.3268	2E-16		0.03155672	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76244397	76244398	rs72901754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.3	THA1P	rs72901754-A	0.290648	5E-16		0.019823883	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76244488	76244489	rs72901758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	THA1P	rs72901758-G	0.3269	7E-11		0.02524595	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76244488	76244489	rs72901758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.3	THA1P	rs72901758-G	0.327	5E-10		0.02405246	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76244488	76244489	rs72901758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	THA1P	rs72901758-G	0.3269	9E-17		0.0321627	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76247157	76247158	rs880695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q25.3		rs880695-C	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1166	chr17	76247157	76247158	rs880695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	THA1P	rs880695-C	0.305786	3E-29		0.02713581	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1166	chr17	76248035	76248036	rs34219567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs34219567-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1166	chr17	76253175	76253176	rs115619982	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q25.3	NR	rs115619982-?	NR	1E-8		9272.94	NR unit decrease	Illumina [2379855]	N
1166	chr17	76253656	76253657	rs3887417	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs3887417-A	NR	1E-12		0.0254	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1166	chr17	76253995	76253996	rs12952267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q25.3	NR	rs12952267-A	0.238394	5E-13		0.016803	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1166	chr17	76256531	76256532	rs7223465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs7223465-G	0.379896	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1166	chr17	76256531	76256532	rs7223465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q25.3	NR	rs7223465-G	0.447968	4E-17		0.016524	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1166	chr17	76257891	76257892	rs8067186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.3		rs8067186-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1166	chr17	76258662	76258663	rs12940709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.3	RP11-219G17.4	rs12940709-G	0.242023	3E-10		0.016265033	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1166	chr17	76259846	76259847	rs11650665	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q25.3	RP11-219G17.4	rs11650665-G	0.3115	1E-17		0.03318629	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1166	chr17	76262741	76262742	rs1075927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs1075927-G	0.204649	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1166	chr17	76264932	76264933	rs145495825	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs145495825-T	0.01045	3E-9	(LASP1)	0.05288	NR unit increase	Illumina [1671387] (imputed)	N
1166	chr17	76280559	76280560	rs9302874	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	17q25.3	RP11-219G17.4	rs9302874-?	NR	2E-7	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1167	chr17	76304509	76304510	rs8081523	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	17q25.3	BIRC5, SOCS3	rs8081523-?	NR	5E-6		0.13	[0.075-0.185] unit increase	Illumina [> 2500000] (imputed)	N
1167	chr17	76311990	76311991	rs4789580	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	NR	rs4789580-G	0.203878510467706	9E-6	(IGP49)	0.2275	[0.13-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
1167	chr17	76334785	76334786	rs6501199	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q25.3	NR	rs6501199-G	0.311771	1E-16		0.0186802	[0.014-0.023] unit decrease	NR [NR]	N
1167	chr17	76334785	76334786	rs6501199	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	17q25.3	LOC100996291, SOCS3	rs6501199-?	NR	1E-11		0.03207	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1167	chr17	76343960	76343961	rs11077359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.3	NR	rs11077359-C	NR	6E-26		0.0307	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr17	76343960	76343961	rs11077359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.3	AC061992.2	rs11077359-C	0.79033	2E-10		0.017553939	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76343960	76343961	rs11077359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.3	AC061992.2	rs11077359-C	0.790328	1E-9		0.016756957	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76352553	76352554	rs76848919	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	17q25.3	SOCS3	rs76848919-C	0.19947099999999995	6E-9		1.0448253	1.02952806486462-1.06034995216004]	NR [9572556] (imputed)	N
1167	chr17	76352553	76352554	rs76848919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q25.3		rs76848919-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1167	chr17	76360537	76360538	rs4969170	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	17q25.3	RN7SL236P	rs4969170-G		7E-6		4.81	[NR] unit decrease	Illumina [up to 5481607] (imputed)	N
1167	chr17	76363639	76363640	rs12952093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	17q25.3		rs12952093-C	NR	1E-30		0.032	[0.027-0.037] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1167	chr17	76364098	76364099	rs6501207	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q25.3	NR	rs6501207-T	0.267692	3E-36		0.0295677	[0.025-0.034] unit increase	NR [NR]	N
1167	chr17	76368760	76368761	rs4527079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.3	NR	rs4527079-G	NR	1E-9		0.0268	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr17	76369479	76369480	rs7225449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs7225449-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1167	chr17	76371591	76371592	rs12601655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.3	NR	rs12601655-G	NR	1E-21		0.0288	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr17	76371591	76371592	rs12601655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q25.3	NR	rs12601655-G	NR	7E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr17	76373178	76373179	rs113417153	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	17q25.3	PGS1	rs113417153-T	0.193	2E-8		0.893	[0.85-0.93]	Illumina [11270530] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	NR	7E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	0.503	4E-6	(EA)	0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	NR	7E-7		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	0.503	7E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	NR	2E-6		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	0.503	2E-6	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	NR	9E-16		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76377481	76377482	rs4082919	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4082919-T	0.503	1E-12	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76379332	76379333	rs148101901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	17q25.3		rs148101901-C	NR	1E-12		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1167	chr17	76381020	76381021	rs938348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.3	PGS1	rs938348-T	0.499649	3E-9		0.013674566	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17q25.3	NR	rs12948394-C	0.51766	2E-25		0.0202562	[0.016-0.024] unit increase	Affymetrix [15000001]	N
1167	chr17	76382790	76382791	rs12948394	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	17q25.3	PGS1	rs12948394-C	0.517578	5E-18		0.0183539	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	17q25.3	PGS1	rs12948394-C	0.517654	6E-11		0.0138506	[0.0097-0.018] unit increase	Affymetrix [NR] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	17q25.3	PGS1	rs12948394-?	NR	5E-15		0.0204	[0.016-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	NR	1E-7		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	0.569	3E-7	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	NR	1E-7		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	0.569	1E-7	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	NR	7E-11		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs12948394-C	0.569	3E-9	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76382790	76382791	rs12948394	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	17q25.3	PGS1	rs12948394-C	0.55	4E-8		0.034	[0.022-0.046] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1167	chr17	76385712	76385712	rs34954607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q25.3		rs34954607-CT	NR	7E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1167	chr17	76386036	76386037	rs12452576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	PGS1	rs12452576-C	0.611251	5E-19		0.020621978	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76386334	76386335	rs8077859	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	17q25.3	NR	rs8077859-C	0.389542	7E-14		0.0151331	[0.011-0.019] unit decrease	NR [NR]	N
1167	chr17	76386405	76386406	rs7222619	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	17q25.3	PGS1	rs7222619-T	0.456911	3E-49		0.0303334	[0.026-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1167	chr17	76387102	76387103	rs11653383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs11653383-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1167	chr17	76387273	76387274	rs11657865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	17q25.3		rs11657865-C	0.433692	3E-8		0.0263838	[0.017-0.036] unit increase	Illumina [13465896] (imputed)	N
1167	chr17	76387273	76387274	rs11657865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q25.3		rs11657865-C	NR	4E-45		0.0298	[0.026-0.034] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1167	chr17	76387362	76387363	rs11657987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	17q25.3		rs11657987-G	0.504479	3E-8		0.0231608	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76387362	76387363	rs11657987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	17q25.3		rs11657987-G	0.504479	8E-10		0.0257431	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76387362	76387363	rs11657987	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	17q25.3		rs11657987-G	0.504479	2E-9		0.0250323	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76387362	76387363	rs11657987	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q25.3	PGS1	rs11657987-?		5E-9		0.0261	[0.017-0.035] unit decrease	Illumina [31500000] (imputed)	N
1167	chr17	76387362	76387363	rs11657987	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	PGS1	rs11657987-G	0.502928	2E-16		0.0154141	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
1167	chr17	76388201	76388202	rs4969178	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA			rs4969178-A	0.3984	1E-7		0.0058	[0.0036-0.008] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1167	chr17	76388201	76388202	rs4969178	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals		PGS1	rs4969178-A	0.373	1E-13	(Trans-ethnic initial)	0.0263	[0.019-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1167	chr17	76388342	76388343	rs74587498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.3	NR	rs74587498-C	NR	4E-11		0.0356	[0.025-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr17	76389175	76389176	rs12451109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs12451109-G	0.574396	1E-11				Affymetrix, Illumina [21126107] (imputed)	N
1167	chr17	76391004	76391005	rs72911393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q25.3	NR	rs72911393-T	NR	3E-13		0.0257	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr17	76391004	76391005	rs72911393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q25.3	NR	rs72911393-T	NR	7E-12		0.0242	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	1E-11		0.0272277	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	3E-11		0.0266044	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	1E-9		0.0246376	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396097	3E-12		0.0274835	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	1E-11		0.0272901	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	4E-9		0.0236378	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	3E-11		0.0263479	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	4E-13		0.0287225	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	1E-10		0.0258601	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	3E-12		0.02775	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969179-T	0.396101	2E-9		0.0240413	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	17q25.3		rs4969179-G	NR	2E-17		0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1167	chr17	76391453	76391454	rs4969179	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	17q25.3	PGS1	rs4969179-T	0.39555	3E-18		0.017794	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	3E-8		0.0212498	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	1E-8		0.0216023	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	7E-9		0.0220831	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	4E-11		0.0256636	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	6E-11		0.025001	[0.018-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	2E-10		0.0244254	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	17q25.3		rs4969141-C	0.510472	1E-8		0.0215827	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	PGS1	rs4969141-T	0.489981	5E-15		0.017473355	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	PGS1	rs4969141-T	0.490081	4E-23		0.02222322	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76391652	76391653	rs4969141	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q25.3	PGS1	rs4969141-C	0.510326	3E-54		0.0296327	[0.026-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1167	chr17	76392143	76392144	rs17561950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs17561950-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1167	chr17	76392143	76392144	rs17561950	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.3	PGS1	rs17561950-A	0.4593	5E-13		0.0196	[0.014-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1167	chr17	76392143	76392144	rs17561950	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.3	PGS1	rs17561950-A	0.4592	2E-11		0.0181	[0.013-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	NR	8E-8		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	0.504	2E-6	(EA)	0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	NR	1E-7		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	0.504	7E-7	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	0.504	3E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	NR	1E-17		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393371	76393372	rs4969183	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969183-A	0.504	1E-13	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76393675	76393675	rs10642898	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	17q25.3		rs10642898-C	0.598451	3E-8		0.023157	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76393675	76393675	rs10642898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	17q25.3		rs10642898-CCCG	NR	3E-21		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1167	chr17	76393675	76393675	rs10642898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	PGS1	rs10642898-CCCG	0.401779	2E-23		0.024523478	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76393675	76393675	rs10642898	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs10642898-?	NR	3E-16		0.0171382	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1167	chr17	76394194	76394195	rs2292645	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	17q25.3		rs2292645-T	0.750194	4E-8		0.0252889	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76394448	76394449	rs2292644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	17q25.3		rs2292644-C	0.39678	5E-9		0.0231047	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1167	chr17	76395420	76395421	rs2292643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q25.3		rs2292643-G	0.396291	3E-8		0.0224885	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76395420	76395421	rs2292643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q25.3		rs2292643-G	0.396291	4E-8		0.0222124	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76395420	76395421	rs2292643	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	17q25.3		rs2292643-G	0.396291	1E-8		0.0232582	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76395429	76395430	rs2292642	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		17q25.3	PGS1	rs2292642-C	NR	3E-8		0.00584	[0.0017-0.01] nmol/l decrease	NR [19000000] (imputed)	N
1167	chr17	76396962	76396963	rs3817294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	17q25.3		rs3817294-A	0.396331	2E-8		0.0228439	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1167	chr17	76397308	76397309	rs11077363	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	17q25.3	PGS1	rs11077363-?	NR	5E-12		0.0185	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
1167	chr17	76397333	76397334	rs12451715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q25.3	NR	rs12451715-C	0.60524	1E-13		0.01512	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q25.3	PGS1	rs8071884-G	NR	6E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q25.3	PGS1	rs8071884-G	NR	4E-10				Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q25.3	PGS1	rs8071884-G	NR	2E-6		0.009	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q25.3	PGS1	rs8071884-G	NR	6E-28				Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	17q25.3	PGS1	rs8071884-G	NR	3E-21	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	5E-22	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	4E-31				Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	17q25.3	PGS1	rs8071884-G	NR	2E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q25.3	PGS1	rs8071884-G	NR	2E-17		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	17q25.3	PGS1	rs8071884-G	NR	2E-14	(EA)	0.009	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q25.3	PGS1	rs8071884-G	NR	7E-9	(EA)	0.009441	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398057	76398058	rs8071884	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	17q25.3	PGS1	rs8071884-G	NR	3E-11		0.006733	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1167	chr17	76398124	76398124	rs779518917	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	17q25.3	PGS1	rs779518917-GTGT	0.403203	5E-10		0.0415352	[0.028-0.055] unit increase	Affymetrix [9463307] (imputed)	N
1167	chr17	76398403	76398404	rs4969186	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969186-G	NR	5E-8		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76398403	76398404	rs4969186	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969186-G	0.384	3E-6	(EA)	0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76398403	76398404	rs4969186	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969186-G	NR	2E-13		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76398403	76398404	rs4969186	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4969186-G	0.384	1E-10	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76400320	76400321	rs9900494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q25.3		rs9900494-G	NR	5E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1167	chr17	76400328	76400329	rs12601079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q25.3	PGS1	rs12601079-G	0.601734	1E-9		0.0141275	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr17	76400328	76400329	rs12601079	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.3	PGS1	rs12601079-A	0.6042	8E-35		0.0334	[0.028-0.039] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1167	chr17	76401317	76401318	rs1976704	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	17q25.3	PGS1	rs1976704-?	NR	6E-9		0.005035	[0.0032-0.0069] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1167	chr17	76401328	76401329	rs1968014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	PGS1	rs1968014-G	0.851952	5E-11		0.022105895	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	17q25.3		rs2376584-G	0.591216	7E-9		0.024139	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q25.3		rs2376584-G	0.591216	8E-10		0.0253834	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q25.3		rs2376584-G	0.591216	1E-9		0.0248376	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q25.3		rs2376584-G	0.591228	2E-9		0.0252841	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	17q25.3		rs2376584-G	0.591216	6E-9		0.0240209	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q25.3	PGS1	rs2376584-A	0.41	7E-13		7.19	z-score increase	Affymetrix [4314223] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	PGS1	rs2376584-A	0.409116	8E-22		0.021932403	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76402115	76402116	rs2376584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	PGS1	rs2376584-A	0.409112	6E-20		0.020912593	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	17q25.3		rs4129767-G	0.510688	6E-9		0.0233709	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	17q25.3		rs4129767-A	0.461	3E-7		0.0056	[0.0034-0.0078] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	NR	2E-7		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	0.505	6E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	NR	1E-7		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	0.505	6E-7	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	NR	7E-7		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	0.505	2E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	NR	4E-17		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	17q25.3	NR	rs4129767-G	0.505	4E-13	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	17q25.3	PGS1	rs4129767-G	0.48	2E-11		0.024	[NR] unit decrease	NR [NR] (imputed)	N
1167	chr17	76403983	76403984	rs4129767	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	17q25.3	PGS1	rs4129767-G	0.48	5E-9		0.4	[0.24-0.56] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1167	chr17	76404184	76404188	rs779779810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q25.3		rs779779810-T	NR	5E-20		0.0215	[0.017-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	4E-11		0.0257489	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	4E-11		0.0257489	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	4E-10		0.0232114	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	4E-10		0.0232114	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	9E-11		0.0241888	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76404189	76404189	rs748643900	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	17q25.3		rs748643900-ATCAG,rs748643900-ATCAG	0.511608	9E-11		0.0241888	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76405735	76405736	rs4969143	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	17q25.3	NR	rs4969143-T	0.376	1E-15				Affymetrix, Illumina [at least 2500000] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	7E-10		0.0247019	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q25.3		rs4969144-C	0.479124	1E-9		0.0249708	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	1E-10		0.0263364	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	7E-10		0.0251113	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	1E-8		0.0228216	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	2E-11		0.0269963	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	2E-9		0.0242484	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q25.3		rs4969144-C	0.479124	6E-11		0.026493	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	17q25.3		rs4969144-C	0.4789	3E-9		0.0241006	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	17q25.3		rs4969144-C	0.479124	1E-10		0.0260274	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406083	76406084	rs4969144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	17q25.3		rs4969144-C	0.478915	7E-10		0.0253376	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1167	chr17	76406169	76406170	rs4969145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q25.3	PGS1	rs4969145-C	0.582127	5E-9		0.0133524	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1167	chr17	76406169	76406170	rs4969145	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	17q25.3	PGS1	rs4969145-T	0.4022	7E-17		0.023	[0.018-0.028] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1167	chr17	76406691	76406692	rs12942811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs12942811-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1167	chr17	76409311	76409312	rs79388987	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q25.3	NR	rs79388987-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1167	chr17	76409808	76409809	rs17642548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs17642548-A	NR	8E-14		0.0193	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr17	76409808	76409809	rs17642548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	17q25.3	NR	rs17642548-A	NR	1E-20		0.0251	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr17	76409808	76409809	rs17642548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	17q25.3	NR	rs17642548-A	NR	4E-13		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1167	chr17	76409808	76409809	rs17642548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	17q25.3	NR	rs17642548-A	NR	6E-17		0.0227	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr17	76417882	76417883	rs2376585	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q25.3	NR	rs2376585-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1168	chr17	76423096	76423097	rs2271613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.3		rs2271613-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1168	chr17	76424217	76424218	rs115793642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	DNAH17	rs115793642-T	0.168319	1E-9		0.018231198	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr17	76424218	76424219	rs116246792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	DNAH17	rs116246792-G	0.16806	2E-9		0.017999683	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1168	chr17	76425175	76425176	rs691094	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q25.3	NR	rs691094-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1168	chr17	76425479	76425480	rs666463	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q25.3	DNAH17	rs666463-A	0.8328	3E-9		0.076	[0.051-0.101] unit increase	NR [7784415] (imputed)	N
1168	chr17	76426344	76426345	rs146686692	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs146686692-C	0.01045	2E-8	(RBMX)	0.1536	NR unit increase	Illumina [1671387] (imputed)	N
1168	chr17	76433212	76433213	rs144303375	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	17q25.3	DNAH17	rs144303375-T	0.9972	5E-6		0.4116	[0.24-0.59] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1168	chr17	76439360	76439361	rs72925845	24886709	Ko A	2014-06-02	Nat Commun	Amerindian-specific regions under positive selection harbour new lipid variants in Latinos.	Triglycerides	1,678 Mexican ancestry high triglyceride cases, 1,645 Mexican ancestry low triglyceride controls	2,129 Mexican ancestry high triglyceride cases, 2,985 Mexican ancestry low triglyceride controls, 903 Mexican ancestry individuals from 73 dyslipidemic families	17q25.3	DNAH17	rs72925845-?	NR	7E-9		1.64	[1.3-2.08]	Illumina [1661241] (imputed)	N
1168	chr17	76439836	76439837	rs8081627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.3	DNAH17	rs8081627-G	0.848269	2E-9		0.018410511	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1168	chr17	76443496	76443497	rs55888180	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	17q25.3	DNAH17	rs55888180-C	NR	4E-8	(Phosphatidylcholine with acyl-alkyl residue sum C36:3)	0.400252	[0.26-0.54] unit increase	Illumina [up to 9281895] (imputed)	N
1168	chr17	76445230	76445231	rs7223548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	17q25.3	NR	rs7223548-C	NR	3E-13		0.0282	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1168	chr17	76452994	76452995	rs12952770	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	17q25.3	NR	rs12952770-A	0.87	2E-6	(EA)	3.54	[2.13-4.95] bpm decrease	Illumina [at least 1100000] (imputed)	N
1169	chr17	76556114	76556115	rs78212518	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	17q25.3	DNAH17	rs78212518-T	0.014	6E-6		2.83	[1.8-4.46]	Affymetrix [up to 27494467] (imputed)	N
1169	chr17	76614119	76614120	rs4796796	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	17q25.3	LOC101928710	rs4796796-T	0.159	5E-6	(men)	0.244	[0.14-0.35] mg/dL increase	Illumina [622468]	N
1169	chr17	76633964	76633965	rs4796827	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety and major depressive disorder	1,080 European ancestry cases, 1,588 European ancestry controls	NA	17q25.3	CYTH1	rs4796827-A	0.409	2E-6		1.326	[NR]	Illumina [471581]	N
1169	chr17	76663838	76663839	rs181153817	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus C sp000437255 abundance in stool	5,959 Finnish ancestry individuals	NA	17q25.3		rs181153817-T	0.0104871	2E-8		0.406389	[0.26-0.55] unit increase	Illumina [7980478] (imputed)	N
1170	chr17	76703515	76703516	rs11654527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q25.3		rs11654527-T	NR	8E-10		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1170	chr17	76707395	76707396	rs57453217	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q25.3	CYTH1	rs57453217-C	0.4747	4E-9		0.1556	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1170	chr17	76732337	76732338	rs16971669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	CYTH1	rs16971669-C	0.027207	2E-10		0.0433198	[0.03-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1170	chr17	76737117	76737118	rs17736589	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	17q25.3	intergenic	rs17736589-G	0.2075	4E-8	(EA)	1.0858142	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1170	chr17	76739140	76739141	rs11658134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q25.3		rs11658134-A	NR	1E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1170	chr17	76762038	76762039	rs62075585	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q25.3	NR	rs62075585-G	0.4735	1E-10		0.0295	[0.02-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1170	chr17	76762038	76762039	rs62075585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q25.3		rs62075585-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1170	chr17	76766437	76766438	rs35531159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q25.3		rs35531159-G	NR	7E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1170	chr17	76769604	76769605	rs7218647	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q25.3	CYTH1	rs7218647-G	0.440959	2E-8		0.0108574	[0.0071-0.0146] unit decrease	Affymetrix [NR] (imputed)	N
1170	chr17	76772287	76772288	rs7224711	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q25.3	NR	rs7224711-C	0.5196	1E-15		0.0307	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1170	chr17	76773637	76773638	rs12604076	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17q25.3	CYTH1, USP36	rs12604076-T	0.478	4E-8		1.04	[1.02-1.05]	Illumina [34740186] (imputed)	N
1170	chr17	76790278	76790279	rs8073626	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q25.3	CYTH1, USP36	rs8073626-C		1E-8		0.217	unit increase	Affymetrix [at least 2696785] (imputed)	N
1170	chr17	76790278	76790279	rs8073626	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	17q25.3	CYTH1, USP36	rs8073626-C		2E-6		0.122	unit increase	Affymetrix [at least 2696785] (imputed)	N
1170	chr17	76791216	76791217	rs867596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q25.3		rs867596-A	NR	6E-16		0.0105	[0.008-0.013] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1170	chr17	76792178	76792179	rs1044486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q25.3		rs1044486-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1170	chr17	76793599	76793600	rs3744802	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs3744802-A	NR	2E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1170	chr17	76796462	76796463	rs11077397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs11077397-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1170	chr17	76797888	76797889	rs201857791	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q25.3	NR	rs201857791-?	NR	2E-6		6385.172	NR unit decrease	Illumina [2379855]	N
1170	chr17	76798361	76798362	rs2306526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q25.3		rs2306526-T	NR	4E-12		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1170	chr17	76798361	76798362	rs2306526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q25.3		rs2306526-T	NR	2E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1170	chr17	76799794	76799795	rs1057040	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q25.3		rs1057040-A	0.3951	5E-6		0.7166	[0.6211-0.8268]	Affymetrix [7975321] (imputed)	N
1170	chr17	76804315	76804316	rs12942645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs12942645-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1171	chr17	76808725	76808726	rs6501250	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	17q25.3	USP36	rs6501250-T	0.47807199	4E-8		0.262692	[0.17-0.36] unit increase	Affymetrix [9463307] (imputed)	N
1171	chr17	76811802	76811803	rs7218605	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q25.3	USP36	rs7218605-T	0.5037	2E-8		0.1822	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1171	chr17	76833428	76833429	rs900348	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	USP36	rs900348-C	0.812381	3E-9		0.0140938	[0.0094-0.0187] unit decrease	NR [13737936] (imputed)	N
1171	chr17	76840913	76840914	rs9895419	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	17q25.3	NR	rs9895419-A	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1171	chr17	76840913	76840914	rs9895419	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	17q25.3	NR	rs9895419-A	NR	7E-6				Affymetrix [~ 8270000] (imputed)	N
1171	chr17	76840913	76840914	rs9895419	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs9895419-A	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
1171	chr17	76856965	76856966	rs1973232	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q25.3	USP36	rs1973232-A	0.815336239932262	1E-7		0.0036585	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1171	chr17	76858352	76858353	rs8080307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs8080307-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1171	chr17	76858352	76858353	rs8080307	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs8080307-?	NR	2E-11		0.0266361	[0.019-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1171	chr17	76864442	76864443	rs11077400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q25.3		rs11077400-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1171	chr17	76868613	76868614	rs9900972	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q25.3	TIMP2	rs9900972-A	0.139	8E-6	(Head circumference )	0.02	[NR] cm increase	Illumina [899892]	N
1171	chr17	76870580	76870581	rs2009196	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	17q25.3	TIMP2	rs2009196-C	0.23	2E-6	(Age 20-81 years)	1.41	[1.22-1.62]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1171	chr17	76874460	76874461	rs7342889	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	17q25.3	NR	rs7342889-?	NR	2E-8	(Victivallis_vadensis)	0.503077	[0.34-0.67] unit increase	Illumina [5293637] (imputed)	N
1171	chr17	76874460	76874461	rs7342889	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	17q25.3	NR	rs7342889-?	NR	2E-8	(Victivallales)	0.503077	[0.34-0.67] unit increase	Illumina [5293637] (imputed)	N
1171	chr17	76874460	76874461	rs7342889	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	17q25.3	NR	rs7342889-?	NR	2E-8	(Lentisphaeria)	0.503077	[0.34-0.67] unit increase	Illumina [5293637] (imputed)	N
1171	chr17	76881702	76881703	rs4789939	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	17q25.3	AC100788.1, TIMP2	rs4789939-?	0.86	6E-7		1.22	[1.11-1.35]	Illumina [234939]	N
1171	chr17	76885116	76885117	rs2003241	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q25.3	NR	rs2003241-T	NR	1E-7		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1171	chr17	76885116	76885117	rs2003241	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	17q25.3	NR	rs2003241-T	NR	4E-8				Affymetrix, Illumina [NR] (imputed)	N
1171	chr17	76888040	76888041	rs8077028	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		17q25.3	TIMP2	rs8077028-T	0.751	1E-6	(liability model)	0.09	[0.051-0.129] unit decrease	NR [19725427] (imputed)	N
1171	chr17	76890863	76890864	rs2376999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP2	5,341 Icelandic ancestry individuals	NA	17q25.3		rs2376999-G	0.1137	4E-47		0.36386	[0.31-0.41] unit decrease	Illumina [7506463] (imputed)	N
1171	chr17	76890863	76890864	rs2376999	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	TIMP2	rs2376999-A	0.884375	3E-29	(TIMP2, 2278_61_4)	0.417659	[0.35-0.49] unit increase	Illumina [> 1000000] (imputed)	N
1171	chr17	76893134	76893135	rs3744790	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	17q25.3	NR	rs3744790-?	0.8	8E-7		1.54	[NR]	Illumina [1468075]	N
1171	chr17	76893670	76893671	rs3744787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	17q25.3		rs3744787-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1171	chr17	76899526	76899527	rs73395197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP2	5,341 Icelandic ancestry individuals	NA	17q25.3		rs73395197-C	0.09512	8E-10		0.170631	[0.12-0.23] unit decrease	Illumina [7506463] (imputed)	N
1171	chr17	76902248	76902249	rs9905388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.3		rs9905388-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1171	chr17	76906366	76906367	rs35881190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q25.3	NR	rs35881190-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1171	chr17	76906366	76906367	rs35881190	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	TIMP2	rs35881190-C	0.654104	4E-15		0.0154397	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
1171	chr17	76906366	76906367	rs35881190	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs35881190-?	NR	9E-16		0.0167184	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1171	chr17	76913842	76913843	rs8066695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q25.3	NR	rs8066695-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1172	chr17	76944701	76944702	rs35904471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs35904471-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1172	chr17	76967095	76967096	rs58996443	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs58996443-G	0.01045	2E-8	(SPTAN1)	0.5105	NR unit increase	Illumina [1671387] (imputed)	N
1172	chr17	76971525	76971526	rs3826311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	17q25.3		rs3826311-C	0.1853	2E-12		0.173155	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1172	chr17	76988784	76988785	rs11891	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	17q25.3	NR	rs11891-T	NR	7E-6		0.0322	[NR] mg/dl decrease	Illumina [up to 509150]	N
1172	chr17	77004643	77004644	rs4789847	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	LGALS3BP	rs4789847-A	0.82875	4E-9	(LGALS3BP, 5000_52_1)	0.19586562	[0.13-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1173	chr17	77086820	77086821	rs117691352	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	17q25.3	NR	rs117691352-A	0.02728	7E-8		0.5077	[0.32-0.69] unit increase	Illumina [10677593] (imputed)	N
1173	chr17	77098830	77098831	rs150755563	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	17q25.3	NR	rs150755563-?	NR	4E-6		0.2093	[0.12-0.3] unit increase	Illumina [at least 560000] (imputed)	N
1173	chr17	77112561	77112562	rs2061538	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	17q25.3	RBFOX3	rs2061538-G	0.160098	6E-9		1.527849	[1.324419-1.762525]	Affymetrix, Illumina [NR] (imputed)	N
1173	chr17	77141307	77141308	rs7211029	27142678	Amin N	2016-05-04	Eur J Hum Genet	Genetic variants in RBFOX3 are associated with sleep latency.	Sleep latency	1983 European ancestry individuals, 747 Erasmus Rucphen (founder/genetic isolate) individuals, 610 Korculan (founder/genetic isolate) individuals, 696 Tyrolean (founder/genetic isolate) individuals, 206 Orcadian (founder/genetic isolate) individuals	30,377 European ancestry individuals	17q25.3	RBFOX3	rs7211029-?		1E-7		0.03	[0.011-0.049] unit decrease	Affymetrix, Illumina, Perlegen [2572737] (imputed)	N
1173	chr17	77150806	77150807	rs2612778	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	17q25.3	NR	rs2612778-?	NR	2E-6		0.0651	[0.038-0.092] unit decrease	Illumina [at least 560000] (imputed)	N
1173	chr17	77171894	77171895	rs11867552	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	17q25.3	HRNBP3	rs11867552-T	0.28	7E-6		4.54	NR Z score decrease	Affymetrix, Illumina [2725778] (imputed)	N
1173	chr17	77178381	77178382	rs2612765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q25.3		rs2612765-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1174	chr17	77202829	77202830	rs4789955	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	17q25.3	RBFOX3	rs4789955-?	NR	9E-6				Illumina [540916] (imputed)	N
1174	chr17	77265877	77265878	rs1000791	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	17q25.3	RBFOX3	rs1000791-T	0.91	4E-7	(women)	0.209	[0.13-0.29] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1174	chr17	77267376	77267377	rs1975866	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	17q25.3	NR	rs1975866-C		3E-8	(African)	0.39	[0.21-0.57] unit increase	Illumina [NR] (imputed)	N
1174	chr17	77273512	77273513	rs898534	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	17q25.3	RBFOX3	rs898534-G	0.88	2E-6	(Women)	0.016758949	[0.0098-0.0237] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1174	chr17	77273512	77273513	rs898534	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	17q25.3	RBFOX3	rs898534-G	0.88	3E-8	(Combined sex)	0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1174	chr17	77293932	77293933	rs143203352	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylcholine levels	2,045 European ancestry individuals	NA	17q25.3	RBFOX3	rs143203352-C	NR	3E-8	(PC(16:0;0-18:1;0))	0.5971	[0.39-0.81] unit increase	Illumina [~ 9300000] (imputed)	N
1174	chr17	77305202	77305203	rs79211555	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q25.3	NR	rs79211555-?	NR	3E-8	(AA)	1.6521	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1174	chr17	77305202	77305203	rs79211555	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q25.3	NR	rs79211555-?	NR	3E-9	(AA)	1.5956	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1174	chr17	77327781	77327782	rs12946859	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q25.3	FLJ21865	rs12946859-?	NR	2E-6	(niacinamide)	0.26638705	[0.16-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1175	chr17	77361175	77361176	rs12949587	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	17q25.3	NR	rs12949587-?	NR	1E-8	(Co-Dominant, Mixture cure model)	7.92	[3.88-16.16]	Illumina [810622]	N
1175	chr17	77390247	77390248	rs113685315	31370031	Dou KX	2019-08-01	Aging (Albany NY)	Genome-wide association study identifies CBFA2T3 affecting the rate of CSF A?42 decline in non-demented elders.	Annualised percent change of cerebrospinal fluid AB1-42 levels	321 European ancestry individuals	NA	17q25.3	RBFOX3	rs113685315-A	0.162	8E-6		0.025	NR % increase	Illumina [1040042]	N
1175	chr17	77410858	77410859	rs1316453	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	17q25.3	intergenic	rs1316453-C	0.3466	7E-6		0.0624	[0.035-0.090] unit increase	Illumina [2400000] (imputed)	N
1175	chr17	77422520	77422521	rs8075220	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	17q25.3	FLJ21865	rs8075220-?	NR	6E-6	(TAG 56:3)	0.2711735	[0.15-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1175	chr17	77449094	77449095	rs12450239	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q25.3	RBFOX3	rs12450239-A	0.258	4E-6	(EA, women)	0.026	[0.015-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1176	chr17	77535068	77535069	rs35863760	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	17q25.3	NR	rs35863760-C	NR	8E-6	(fixed effect)	1.0526316	NR	NR [6904914] (imputed)	N
1176	chr17	77536945	77536946	rs35570576	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	17q25.3	RBFOX3, HP09025	rs35570576-?	NR	2E-9		1.092	[1.061-1.124]	Illumina [13729857] (imputed)	N
1177	chr17	77657520	77657521	rs4889908	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (ABCA-1 dependent assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	17q25.3	RBFOX3/ENPP7	rs4889908-C	0.715	2E-6		0.1047	[0.061-0.148] unit increase	Illumina [at least 9000000] (imputed)	N
1177	chr17	77697096	77697097	rs8065292	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	NR	rs8065292-G	0.31	6E-504	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 7, ENPP7.4435.66.2)	1.02	[0.98-1.06] unit increase	Affymetrix [10572788] (imputed)	N
1177	chr17	77698648	77698649	rs35759773	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	ENPP7	rs35759773-A	0.59984375	1E-475	(ENPP7, 4435_66_2)	1.0138414	[0.98-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
1177	chr17	77704250	77704251	rs28502318	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	17q25.3	NR	rs28502318-?	NR	4E-49	(ENPP7)			Illumina [~ 4000000] (imputed)	N
1177	chr17	77705741	77705742	rs112460278	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	NR	rs112460278-T	0.125	4E-189	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 7, ENPP7.4435.66.2)	1.06	[0.98-1.14] unit increase	Affymetrix [10572788] (imputed)	N
1177	chr17	77706543	77706544	rs11871061	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	ENPP7	rs11871061-C	0.359	5E-531	(Ectonucleotide pyrophosphatase/phosphodiesterase family member 7, ENPP7.4435.66.2)	0.99	[0.95-1.03] unit increase	Affymetrix [10572788] (imputed)	N
1177	chr17	77709338	77709339	rs11657217	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Diastolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	17q25.3	ENPP7	rs11657217-C	0.69	5E-6	(EA)	0.7	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1178	chr17	77768653	77768654	rs4889891	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q25.3	NR	rs4889891-A	0.4922	2E-9				NR [9056863] (imputed)	N
1178	chr17	77768653	77768654	rs4889891	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q25.3		rs4889891-C	0.519	8E-14		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1178	chr17	77768653	77768654	rs4889891	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q25.3	CBX8	rs4889891-A	0.4937	1E-8		0.014597506	[0.0095-0.0196] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1178	chr17	77771547	77771548	rs8082452	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.3	NR	rs8082452-G	0.4562	1E-10	(EA)	0.0418	[0.029-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
1178	chr17	77773875	77773876	rs870681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.3	CBX8	rs870681-C	0.257838	4E-9		0.015125401	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1178	chr17	77778226	77778227	rs9896202	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	17q25.3	CBX8	rs9896202-T	0.502337	3E-8		1.0242813	NR	Affymetrix [~ 9600000] (imputed)	N
1178	chr17	77781724	77781725	rs745570	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q25.3		rs745570-A	0.5	2E-10		6.37	z score increase	Affymetrix [9061022] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q25.3	AC100791.2	rs745570-A	0.48581	4E-9		0.013016205	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs745570-G	0.495708	5E-13				Affymetrix, Illumina [23467995] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q25.3	NR	rs745570-G	0.513574	5E-13		0.014068	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q25.3	CBX2, CBX8, CBX4	rs745570-?		1E-9				NR [7428630] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	17q25.3	AC100791.2	rs745570-G	0.53	3E-8		0.35	[0.23-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1178	chr17	77781724	77781725	rs745570	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	17q25.3	AC100791.2	rs745570-G	0.5133	5E-7		0.3345	[0.2-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1178	chr17	77781724	77781725	rs745570	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	17q25.3	CBX8	rs745570-A	0.4869	1E-8		0.011424577	[0.0075-0.0154] unit increase	Affymetrix [11514654] (imputed)	N
1178	chr17	77781724	77781725	rs745570	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q25.3	NR	rs745570-G	0.509	3E-10		0.00681051	[0.0047-0.0089] unit decrease	NR [9732723] (imputed)	N
1178	chr17	77781724	77781725	rs745570	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.3	intergenic	rs745570-A	0.5	4E-10	(EA)	1.03	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1178	chr17	77781724	77781725	rs745570	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	17q25.3	NR	rs745570-?	0.51	6E-6		1.0416667	[1-1.09] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1178	chr17	77781724	77781725	rs745570	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	17q25.3	intergenic	rs745570-A	0.5	5E-7		1.0526316		Affymetrix, Illumina [~ 14000000] (imputed)	N
1178	chr17	77781724	77781725	rs745570	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	17q25.3	Intergenic	rs745570-A	0.5	1E-9		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1178	chr17	77784267	77784268	rs2587505	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q25.3	NR	rs2587505-T	0.580254	1E-11		0.00556879	[0.004-0.0072] unit increase	Affymetrix [16582909] (imputed)	N
1178	chr17	77784267	77784268	rs2587505	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	17q25.3	CBX8	rs2587505-T	0.581	9E-11		0.0078	[0.0054-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1178	chr17	77784482	77784494	rs754959778	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q25.3	NR	rs754959778-CGT	0.66057	2E-8		0.00631743	[0.004-0.0087] unit increase	Affymetrix [16582621] (imputed)	N
1178	chr17	77790134	77790135	rs2587507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17q25.3	NR	rs2587507-C	0.505998	3E-9		0.0117181	[0.0078-0.0156] unit increase	Affymetrix [16583148] (imputed)	N
1178	chr17	77790134	77790135	rs2587507	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	17q25.3	NR	rs2587507-C	0.506658	1E-8		0.0144984	[0.0096-0.0194] unit increase	Affymetrix [16585745] (imputed)	N
1178	chr17	77790134	77790135	rs2587507	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q25.3	NR	rs2587507-C	0.502	9E-9		0.01466024	[0.0097-0.0197] unit decrease	NR [~ 10000000] (imputed)	N
1178	chr17	77794863	77794864	rs35802963	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	17q25.3	RP11-353N14.2	rs35802963-T	0.1763	2E-7		0.0622	[0.039-0.086] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1178	chr17	77796888	77796889	rs1285245	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs1285245-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1178	chr17	77796888	77796889	rs1285245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q25.3		rs1285245-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1178	chr17	77796888	77796889	rs1285245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.3		rs1285245-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1178	chr17	77796888	77796889	rs1285245	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.3	NA	rs1285245-C	0.3864	2E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1178	chr17	77796888	77796889	rs1285245	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q25.3	NA	rs1285245-C	0.3864	2E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1178	chr17	77800534	77800535	rs398041943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	17q25.3		rs398041943-A	0.316019	5E-8		0.0188471	[0.012-0.026] unit decrease	Illumina [13479178] (imputed)	N
1178	chr17	77801054	77801055	rs1550676	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	17q25.3		rs1550676-C	0.01176	6E-9		2.607	[1.886-3.602]	Affymetrix [7975321] (imputed)	N
1178	chr17	77804839	77804840	rs9747992	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	17q25.3	CBX4	rs9747992-?	0.086	2E-7	(S-DCT concentration)			Illumina [7537437] (imputed)	N
1178	chr17	77805948	77805949	rs28360848	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q25.3	CBX4	rs28360848-C	0.842593	7E-9	(18 ms)	0.0434209	[0.028-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1178	chr17	77805948	77805949	rs28360848	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q25.3	CBX4	rs28360848-C	0.842593	3E-8	(16 ms)	0.0415967	[0.027-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1178	chr17	77805948	77805949	rs28360848	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q25.3	CBX4	rs28360848-C	0.842593	2E-8	(22 ms)	0.0414836	[0.026-0.057] unit increase	Affymetrix [10000000] (imputed)	N
1178	chr17	77805948	77805949	rs28360848	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q25.3	CBX4	rs28360848-C	0.842593	1E-8	(20 ms)	0.0430159	[0.028-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1178	chr17	77827972	77827973	rs1696756	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis (age 10 years and older)	230 osteonecrosis cases, 1,238 treated controls	NA	17q25.3	CBX4	rs1696756-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
1178	chr17	77839810	77839811	rs4889911	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	17q25.3	intergenic	rs4889911-?	NR	6E-6	(Alpha peak frequency, occipital	0.095	[0.054-0.136] unit decrease	Illumina [527829]	N
1179	chr17	77871302	77871303	rs11651756	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	17q25.3		rs11651756-T	NR	3E-6		4.640389	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1179	chr17	77881475	77881476	rs1285284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.3	NR	rs1285284-T	0.36063	4E-9		0.013488293	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1179	chr17	77881708	77881709	rs1285285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q25.3	NR	rs1285285-G	0.36141	1E-10		0.012977	[0.009-0.0169] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1179	chr17	77885257	77885258	rs4889799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.3		rs4889799-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1179	chr17	77889054	77889055	rs1663189	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	17q25.3	NR	rs1663189-T	NR	6E-6	(phenotype 2)	1.79	[NR]	Illumina [> 8000000] (imputed)	N
1179	chr17	77895310	77895311	rs9912236	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	17q25.3	NR	rs9912236-C	0.7501	2E-8		0.0312	[0.02-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1179	chr17	77909084	77909085	rs7214378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q25.3		rs7214378-T	NR	2E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1179	chr17	77909338	77909339	rs2650243	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	17q25.3	NR	rs2650243-A	NR	1E-6	(GEE model)	0.81205	[0.48-1.14] unit increase	NR [NR] (imputed)	N
1179	chr17	77910261	77910262	rs11150819	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q25.3	NR	rs11150819-?	NR	7E-7		839.77576	NR unit increase	Illumina [2379855]	N
1179	chr17	77910296	77910297	rs3206576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	17q25.3		rs3206576-G	0.444301	1E-11		0.0255009	[0.018-0.033] unit increase	Illumina [13477433] (imputed)	N
1179	chr17	77910739	77910740	rs56014161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q25.3		rs56014161-T	NR	3E-26		0.0234	[0.019-0.028] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1179	chr17	77910973	77910974	rs894872	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	17q25.3	TBC1D16	rs894872-?	NR	3E-9		0.02521	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1179	chr17	77914560	77914561	rs2241950	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	17q25.3	TBC1D16	rs2241950-?	NR	2E-11		0.03032	[0.021-0.039] unit increase novel	Illumina [6108953] (imputed)	N
1179	chr17	77914560	77914561	rs2241950	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	17q25.3	TBC1D16	rs2241950-?	NR	3E-10		0.02851	[0.02-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1179	chr17	77923477	77923478	rs894858	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q25.3		rs894858-A	0.19	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
1179	chr17	77923477	77923478	rs894858	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q25.3		rs894858-A	0.19	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
1179	chr17	77923477	77923478	rs894858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q25.3	NR	rs894858-A	NR	2E-10		0.0212	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1179	chr17	77952750	77952751	rs34768269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q25.3		rs34768269-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1180	chr17	77992103	77992104	rs112477022	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	TBC1D16	rs112477022-A	0.038731	7E-9		0.03560755	[0.024-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr17	78060742	78060743	rs1467979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	NR	rs1467979-C	0.823196467468806	3E-6	(IGP28)	0.186	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1180	chr17	78060742	78060743	rs1467979	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	NR	rs1467979-C	0.82313228539626	2E-6	(IGP15)	0.1923	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1180	chr17	78063634	78063635	rs118143944	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	17q25.3		rs118143944-T	0.020292	7E-8		1.6697278	NR	Affymetrix [7846216] (imputed)	N
1180	chr17	78066616	78066617	rs2361701	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	NR	rs2361701-G	0.823049887254902	4E-6	(IGP28)	0.1856	[0.11-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1180	chr17	78074445	78074446	rs3816257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	17q25.3		rs3816257-C	NR	2E-9		0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1180	chr17	78074467	78074468	rs12051781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q25.3	GAA	rs12051781-G	0.395981	7E-15		0.017913796	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78074467	78074468	rs12051781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs12051781-G	0.395591	1E-13				Affymetrix, Illumina [24588908] (imputed)	N
1180	chr17	78074670	78074674	rs3834976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q25.3	GAA	rs3834976-T	0.385359	1E-15		0.018495806	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr17	78074670	78074670	rs750295851	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.3	NR	rs750295851-D	0.385539	4E-13		0.014971	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1180	chr17	78075461	78075462	rs2304849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GAA	5,362 Icelandic ancestry individuals	NA	17q25.3		rs2304849-C	0.2378	4E-85		0.419269	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
1180	chr17	78076591	78076592	rs12450199	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	GAA	rs12450199-A	0.6465625	1E-48	(GAA, 9385_4_3)	0.36928123	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	17q25.3		rs12451471-T	NR	7E-14		0.0154	[0.011-0.019] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q25.3		rs12451471-T	NR	4E-11		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	17q25.3		rs12451471-T	0.37311	1E-12		0.016509362	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q25.3		rs12451471-T	0.373044	4E-28		0.0251572	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3		rs12451471-T	0.373042	3E-12		0.015897151	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	17q25.3	NR	rs12451471-T	0.371891	4E-15		0.014921	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs12451471-T	0.367489	3E-13				Affymetrix, Illumina [20825802] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.3		rs12451471-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	17q25.3	intergenic	rs12451471-T	0.3743	4E-9		0.02233797	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78102516	78102517	rs12451471	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	17q25.3	intergenic	rs12451471-T	0.3743	4E-14		0.02712568	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78103465	78103466	rs2361718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	17q25.3	NR	rs2361718-?	NR	1E-6		0.031	[0.018-0.044] unit decrease	Illumina [at least 560000] (imputed)	N
1180	chr17	78106314	78106315	rs149900590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	EIF4A3	rs149900590-A	0.036385	3E-15		0.04862572	[0.037-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78106314	78106315	rs149900590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	EIF4A3	rs149900590-A	0.03639	4E-14		0.046713	[0.035-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78106314	78106315	rs149900590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	EIF4A3	rs149900590-A	0.036415	2E-16		0.05053536	[0.038-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78106314	78106315	rs149900590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	EIF4A3	rs149900590-A	0.036417	1E-15		0.049362425	[0.037-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78107536	78107537	rs7211079	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	17q25.3	EIF4A3	rs7211079-A	0.77	2E-7		1.2987013	[NR]	Affymetrix [537798]	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.471988	2E-38		0.029632654	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.472014	8E-36		0.028522758	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.471957	1E-25		0.023984822	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.472016	2E-33		0.02701668	[0.023-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.471965	6E-46		0.03238232	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.47199	2E-44		0.031871073	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2361710-C	0.518665	6E-26				Affymetrix, Illumina [21126107] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q25.3	NR	rs2361710-C	0.471952	3E-28		0.022133	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.4724	1E-18		0.03152986	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.4725	3E-16		0.02926842	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.4725	2E-15		0.02811272	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.4724	2E-22		0.03482019	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78111876	78111877	rs2361710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q25.3	EIF4A3	rs2361710-C	0.4724	3E-21		0.03386273	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1180	chr17	78112333	78112333	rs3071328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	EIF4A3	rs3071328-TAC	0.473257	1E-20		0.020820925	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1181	chr17	78153201	78153202	rs185302072	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	17q25.3	NR	rs185302072-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1181	chr17	78156761	78156762	rs9902358	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	CARD14	rs9902358-A	0.46	1E-17		1.44	[NR]	Illumina [747089]	N
1181	chr17	78177926	78177927	rs112150209	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	17q25.3	CARD14	rs112150209-G	0.01	9E-7	(African American)	1.7	[1.01-2.39] unit decrease	Illumina [up to 13042663] (imputed)	N
1181	chr17	78178786	78178787	rs200004299	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GAA	5,362 Icelandic ancestry individuals	NA	17q25.3		rs200004299-A	0.01273	2E-39		1.08509	[0.92-1.25] unit decrease	Illumina [7506463] (imputed)	N
1181	chr17	78178892	78178893	rs11652075	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	17q25.3		rs11652075-T	NR	4E-7	17	0.77	unit decrease	Illumina [487523]	N
1181	chr17	78178892	78178893	rs11652075	26887379	Tang W	2016-02-18	Mol Neurobiol	Exome-Wide Association Study Identified New Risk Loci for Hirschsprung's Disease.	Hirschsprung disease	167 East Asian ancestry cases, 900 East Asian ancestry controls	NA	17q25.3	CARD14	rs11652075-C	0.353	8E-6				Illumina [Exome array]	N
1181	chr17	78178892	78178893	rs11652075	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	17q25.3	CARD14	rs11652075-C	0.502	3E-8		1.11		Illumina [111236] (imputed)	N
1181	chr17	78201782	78201783	rs6565653	26732560	Cheng YC	2016-01-05	Stroke	Genome-Wide Association Analysis of Young-Onset Stroke Identifies a Locus on Chromosome 10q25 Near HABP2.	Ischemic stroke	2,567 European ancestry cases, 17,163 European ancestry controls, 381 African American ancestry cases, 352 African American ancestry controls, 678 Pakistani ancestry cases, 4,453 Pakistani ancestry controls	1,003 European ancestry cases, 7,745 European ancestry controls	17q25.3	SLC26A11	rs6565653-T	0.46	6E-7	(EA)	1.2	[1.12-1.29]	Illumina [up to 13439215] (imputed)	N
1181	chr17	78212230	78212231	rs12452028	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-1-receptor antagonist levels	706 African American individuals	NA	17q25.3	SLC26A11	rs12452028-C	0.15	8E-7		0.08	unit increase	Affymetrix [5396780] (imputed)	N
1181	chr17	78239531	78239532	rs9916351	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	RNF213	rs9916351-A	0.35	5E-54		1.96	[NR]	Illumina [747089]	N
1181	chr17	78246733	78246734	rs12947578	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	17q25.3	NR	rs12947578-?	NR	9E-12				NR [up to 7000000]	N
1182	chr17	78257345	78257346	rs532860474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q25.3		rs532860474-A	0.007978373	5E-8		0.68359643	[0.44-0.93] unit increase	Illumina [13406905] (imputed)	N
1182	chr17	78257345	78257346	rs532860474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	17q25.3		rs532860474-A	NR	5E-8		0.6836	[0.44-0.93] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1182	chr17	78260010	78260011	rs7220465	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	17q25.3	RNF213	rs7220465-?	NR	5E-10		1.0582011	[1.04-1.08]	Illumina [13763073] (imputed)	N
1182	chr17	78262160	78262161	rs17857135	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	17q25.3	RNF213	rs17857135-T		2E-6		1.2820514	[1.03-1.59]	Affymetrix, Illumina [NR] (imputed)	N
1182	chr17	78262160	78262161	rs17857135	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	17q25.3	RNF213	rs17857135-C	0.17	5E-10		1.06	[1.04-1.08]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1182	chr17	78266758	78266759	rs11869363	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	RNF213	rs11869363-A	0.5	7E-38		1.7857143	[NR]	Illumina [747089]	N
1182	chr17	78267828	78267829	rs954846345	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q25.3		rs954846345-G	0.01019	2E-6		2.959	[1.891-4.629]	Affymetrix [7975321] (imputed)	N
1182	chr17	78281881	78281882	rs35864932	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	17q25.3	NR	rs35864932-C	0.474933	4E-6		1.072	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1182	chr17	78301379	78301380	rs9907978	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	RNF213	rs9907978-A	0.76	8E-17		1.5873016	[NR]	Illumina [747089]	N
1182	chr17	78305870	78305871	rs10782008	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	RNF213	rs10782008-G	0.63	2E-44		2.0	[NR]	Illumina [747089]	N
1182	chr17	78324258	78324259	rs12051723	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity change in response to statin therapy	2,673 European ancestry cases, 2,656 European ancestry controls	NA	17q25.3	RNF213	rs12051723-T	0.14	3E-6	(percent change)	2.2	[1.22-3.18] percent increase	Illumina [796174]	N
1182	chr17	78337583	78337584	rs61740658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q25.3		rs61740658-G	NR	2E-11		0.0244	[0.017-0.031] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1182	chr17	78348493	78348494	rs6565681	21048783	Kamada F	2010-11-04	J Hum Genet	A genome-wide association study identifies RNF213 as the first Moyamoya disease gene.	Moyamoya disease	72 Japanese ancestry cases, 45 Japanese ancestry controls	63 Japanese ancestry cases, 45 Japanese ancestry controls	17q25.3	RNF213	rs6565681-A	0.37	2E-8		4.82	[2.73-8.49]	Illumina [785720]	N
1182	chr17	78352842	78352842	rs571739599	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	17q25.3		rs571739599-?	NR	1E-6		0.6077484	[0.36-0.85] unit increase	Illumina [9842460] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q25.3		rs112735431-A	NR	1E-9		0.7508	[0.51-0.99] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q25.3		rs112735431-A	0.009525402	1E-9		0.7507806	[0.51-0.99] unit increase	Illumina [13425416] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	NR	7E-23		0.191	[0.15-0.23] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	0.010114	7E-23		0.191011	[0.15-0.23] unit increase	Illumina [13477770] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q25.3		rs112735431-A	0.009525402	5E-15		0.5601942	[0.42-0.7] unit increase	Illumina [13427711] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	17q25.3		rs112735431-A	NR	5E-15		0.5602	[0.42-0.7] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	NR	2E-27		0.2125	[0.17-0.25] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	0.010121	2E-27		0.212499	[0.17-0.25] unit increase	Illumina [13477769] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	17q25.3		rs112735431-A	NR	2E-9		0.4291	[0.29-0.57] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	17q25.3		rs112735431-A	0.010066817	2E-9		0.42909747	[0.29-0.57] unit increase	Illumina [13429980] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q25.3		rs112735431-A	0.010066817	9E-10		0.2925136	[0.2-0.39] unit increase	Illumina [13134967] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	17q25.3		rs112735431-A	NR	9E-10		0.2925	[0.2-0.39] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	NR	8E-11		0.1295	[0.09-0.169] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	17q25.3		rs112735431-A	0.010114	8E-11		0.129464	[0.09-0.168] unit increase	Illumina [13477767] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	17q25.3		rs112735431-A	NR	9E-12		0.5526	[0.39-0.71] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	17q25.3		rs112735431-A	0.009505342	9E-12		0.5526137	[0.39-0.71] unit increase	Illumina [13426705] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	17q25.3	RNF213	rs112735431-?	NR	2E-21		0.478976	[0.38-0.58] unit increase	Illumina [19707525] (imputed)	N
1182	chr17	78358944	78358945	rs112735431	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	17q25.3	RNF213, LOC100294362	rs112735431-A	0.17	3E-8		1.91	[1.52-2.41]	Affymetrix [NR]	N
1182	chr17	78363846	78363847	rs3185057	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q25.3	RNF213	rs3185057-G	0.92	5E-10		6.23	z-score increase	Affymetrix [4314223] (imputed)	N
1183	chr17	78407858	78407859	rs7218055	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	17q25.3	ENDOV	rs7218055-?		9E-6				Illumina [4322238] (imputed)	N
1183	chr17	78444657	78444658	rs12943620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs12943620-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1183	chr17	78448639	78448640	rs12600720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs12600720-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1183	chr17	78448639	78448640	rs12600720	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Thalamus volume	34,464 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	17q25.3	NR	rs12600720-C	0.6895	1E-10		6.427	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
1183	chr17	78463725	78463726	rs7222752	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q25.3	NPTX1	rs7222752-G	0.17300000000000004	5E-7		1.0842576		NR [9372253] (imputed)	N
1183	chr17	78505921	78505922	rs62067239	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	NPTX1	rs62067239-C	0.87375	2E-18	(NPTX1, 9256_78_3)	0.3162367	[0.25-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1183	chr17	78511326	78511327	rs28587833	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q25.3	NR	rs28587833-G	NR	8E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1184	chr17	78513100	78513101	rs7222801	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs7222801-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1184	chr17	78513279	78513280	rs4889855	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Fractional excretion of uric acid	768 Hispanic children from 260 families		17q25.3	intergenic	rs4889855-G	0.43	3E-7		0.29	[0.17-0.41] unit decrease	Illumina [899892]	N
1184	chr17	78524596	78524597	rs10438820	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17q25.3	NR	rs10438820-T	0.702	3E-9		0.00850176	[0.0057-0.0113] unit increase	NR [~ 9732723] (imputed)	N
1184	chr17	78524596	78524597	rs10438820	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	17q25.3	NR	rs10438820-T	0.702	2E-8		0.008971778	[0.0058-0.0121] unit increase	NR [~ 10000000] (imputed)	N
1184	chr17	78528750	78528751	rs7217900	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	17q25.3	NR	rs7217900-C	0.685	4E-9		0.010914072	[0.0073-0.0145] unit increase	Affymetrix [NR] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	17q25.3		rs139293840-A	0.01013	1E-6		3.359	[2.058-5.484]	Affymetrix [7975321] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q25.3		rs139293840-A	0.01013	2E-8		3.511	[2.265-5.444]	Affymetrix [7975321] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q25.3	RPTOR	rs139293840-A	0.01	9E-12	(Japanese)	2.3576	[1.68-3.04] unit increase	Illumina [6200000] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	17q25.3	RPTOR	rs139293840-A	0.0144	3E-13	(Japanese)	1.7445	[1.28-2.21] unit increase	Illumina [6200000] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	17q25.3	RPTOR	rs139293840-A	0.0144	1E-6	(Japanese)	1.1983	[0.72-1.68] unit increase	Illumina [6200000] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	17q25.3	RPTOR	rs139293840-A	0.0144	8E-9	(Japanese)	0.3548	[0.23-0.48] unit increase	Illumina [6200000] (imputed)	N
1184	chr17	78530358	78530359	rs139293840	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	17q25.3	RPTOR	rs139293840-?	NR	3E-10		0.1079	[0.074-0.141] unit increase	Illumina [6108953] (imputed)	N
1184	chr17	78591110	78591111	rs7503807	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	17q25.3	RPTOR	rs7503807-A	0.57	2E-8	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1184	chr17	78600817	78600818	rs8079537	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs8079537-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1184	chr17	78610542	78610543	rs9910745	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q25.3	NA	rs9910745-T	0.4449	3E-26		0.0181	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1184	chr17	78611723	78611724	rs12939549	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.3	NA	rs12939549-A	0.5572	4E-28		0.018	[0.015-0.021] unit increase	NR [~ 27400000] (imputed)	N
1184	chr17	78611723	78611724	rs12939549	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	17q25.3	NA	rs12939549-A	0.5572	4E-28		0.018	[0.015-0.021] unit increase	NR [~ 27400000] (imputed)	N
1184	chr17	78611723	78611724	rs12939549	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	17q25.3	NR	rs12939549-A	NR	3E-11		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1184	chr17	78611723	78611724	rs12939549	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	17q25.3	NR	rs12939549-A	0.570476354917151	7E-11		0.017547995	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	17q25.3	RPTOR	rs12940622-A	0.43	6E-9		0.014	[0.01-0.018] unit decrease	Illumina [6108953] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	2E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	5E-7		0.0182	[0.011-0.025] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	2E-6	(men)	0.0258	[0.015-0.036] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	7E-7	(men)	0.0232	[0.014-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	17q25.3	KIAA1303	rs12940622-A	0.4324	2E-8		0.0178	[0.012-0.024] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1184	chr17	78615570	78615571	rs12940622	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q25.3	RPTOR	rs12940622-G	0.577	5E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1184	chr17	78615570	78615571	rs12940622	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q25.3	RPTOR	rs12940622-G	0.575	2E-9	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1184	chr17	78615570	78615571	rs12940622	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	17q25.3	RPTOR	rs12940622-G	0.572	4E-10		0.018	[0.013-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1184	chr17	78620062	78620063	rs62068358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX1	5,365 Icelandic ancestry individuals	NA	17q25.3		rs62068358-G	0.1284	2E-37		0.345915	[0.29-0.4] unit increase	Illumina [7506463] (imputed)	N
1184	chr17	78624701	78624702	rs62069681	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	NPTX1	rs62069681-C	0.093	8E-35	(Neuronal pentraxin-1, NPTX1.9256.78.3)	0.51	[0.43-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1184	chr17	78625755	78625756	rs8066384	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	17q25.3	RPTOR	rs8066384-?		3E-8				NR [6786993] (imputed)	N
1184	chr17	78625755	78625756	rs8066384	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	17q25.3	RPTOR	rs8066384-C	0.704	6E-6		1.0587612		NR [9372253] (imputed)	N
1184	chr17	78625755	78625756	rs8066384	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	17q25.3	NR	rs8066384-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1184	chr17	78627975	78627976	rs35675302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs35675302-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1184	chr17	78640555	78640556	rs62069691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs62069691-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1185	chr17	78645928	78645929	rs7217702	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	17q25.3	NR	rs7217702-C	0.47	2E-8		0.5	[0.32-0.68] unit increase	Affymetrix [39302896] (imputed)	N
1185	chr17	78649071	78649072	rs142206837	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	17q25.3		rs142206837-G	0.01071	9E-6		2.986	[1.84-4.845]	Affymetrix [7975321] (imputed)	N
1185	chr17	78649071	78649072	rs142206837	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q25.3		rs142206837-G	0.01071	3E-7		3.084	[2.004-4.747]	Affymetrix [7975321] (imputed)	N
1185	chr17	78649229	78649230	rs4255830	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs4255830-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1185	chr17	78700954	78700955	rs58418838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q25.3		rs58418838-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1185	chr17	78737286	78737287	rs7215564	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		17q25.3	KIAA1303	rs7215564-?	0.1	2E-6			[NR]	Affymetrix, Illumina [152234]	N
1185	chr17	78757625	78757626	rs11150745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q25.3		rs11150745-G	NR	1E-15		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1185	chr17	78757625	78757626	rs11150745	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q25.3		rs11150745-A	0.68	9E-10				NR [NR] (imputed)	N
1185	chr17	78757625	78757626	rs11150745	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q25.3		rs11150745-A	0.68	2E-15		0.013	% increase	NR [NR] (imputed)	N
1185	chr17	78757625	78757626	rs11150745	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	17q25.3	NR	rs11150745-G	0.3173	5E-9		0.0312	[0.021-0.042] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1185	chr17	78757625	78757626	rs11150745	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q25.3	RPTOR	rs11150745-A	0.68227	8E-16		0.0121511	[0.0092-0.0151] unit increase	Affymetrix [12370749]	N
1185	chr17	78757625	78757626	rs11150745	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q25.3	RPTOR	rs11150745-A	0.68227	9E-21		0.0137948	[0.011-0.017] unit increase	Affymetrix [12370749]	N
1185	chr17	78757625	78757626	rs11150745	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	17q25.3	NR	rs11150745-G	0.3181	3E-13		0.019426655	[0.014-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1185	chr17	78757625	78757626	rs11150745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.3		rs11150745-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1185	chr17	78762807	78762808	rs4969426	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	17q25.3	RNF213	rs4969426-T	0.23	2E-14		1.43	[NR]	Illumina [747089]	N
1185	chr17	78762885	78762886	rs4969427	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	17q25.3	NR	rs4969427-A	NR	3E-6	(male)	0.1559	[0.09-0.222] unit decrease	Illumina [11133794] (imputed)	N
1185	chr17	78767274	78767275	rs12601434	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs12601434-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1185	chr17	78769599	78769600	rs2589138	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs2589138-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1185	chr17	78769813	78769814	rs729743	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	17q25.3		rs729743-A	0.01073	8E-6		2.78	[1.774-4.357]	Affymetrix [7975321] (imputed)	N
1186	chr17	78781650	78781651	rs2672886	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	17q25.3	RPTOR	rs2672886-C	0.457	9E-6	(Continuous PC20)	0.051	[NR] unit increase	Illumina [546355]	N
1186	chr17	78795867	78795868	rs9911574	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	17q25.3	RPTOR	rs9911574-G	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1186	chr17	78858121	78858122	rs2672874	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	17q25.3	NR	rs2672874-?		8E-7		0.003	[0.0017-0.0043] unit increase	Illumina [7533529] (imputed)	N
1186	chr17	78892046	78892047	rs4969304	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	NASH resolution in nonalcoholic steatohepatitis	25 European ancestry cases, 116 European ancestry controls	NA	17q25.3	RPTOR	rs4969304-?	NR	5E-6				Illumina [5417859] (imputed)	N
1186	chr17	78896586	78896587	rs144632265	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	17q25.3		rs144632265-?	NR	3E-10		0.0725605	[0.049-0.097] unit increase	NR [9800000] (imputed)	N
1187	chr17	78939963	78939964	rs1045626	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q25.3	Intergenic	rs1045626-T	0.4824	8E-9	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1187	chr17	78940613	78940614	rs7223311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q25.3		rs7223311-C	0.5169	2E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1187	chr17	78947332	78947333	rs149464898	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	17q25.3	Intergenic	rs149464898-T	NR	3E-7	(between families)	5.136	unit increase	Affymetrix [up to 15107142] (imputed)	N
1187	chr17	79015697	79015698	rs9913477	29871690	Bensen JT	2018-06-05	Breast Cancer Res	A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women.	Breast cancer	3,663 African American cases, 4,687 African American controls	NA	17q25.3	BAIAP2	rs9913477-G	0.06	3E-7		1.44	[1.26-1.65]	Illumina [300008]	N
1187	chr17	79024636	79024637	rs8067235	24392092	Luksys G	2014-01-02	PLoS One	BAIAP2 is related to emotional modulation of human memory strength.	Memory performance	1,241 European ancestry individuals	NA	17q25.3	BAIAP2	rs8067235-?	NR	6E-8				Affymetrix [587111]	N
1188	chr17	79045058	79045059	rs140721383	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	17q25.3	AATK, BAIAP2, BAIAP2-AS1	rs140721383-?		1E-8		3.4627	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1188	chr17	79045772	79045773	rs55748329	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	17q25.3	NR	rs55748329-?		5E-9				NR [520857]	N
1188	chr17	79045772	79045773	rs55748329	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	17q25.3	NR	rs55748329-?		1E-9				NR [11140414]	N
1188	chr17	79045772	79045773	rs55748329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	17q25.3	NR	rs55748329-G	0.138321837414558	3E-15		0.010503805	[0.0079-0.0131] unit decrease	NR [NR]	N
1188	chr17	79045772	79045773	rs55748329	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	17q25.3	NR	rs55748329-G	0.138321837414558	2E-14		0.012794636	[0.0095-0.0161] unit decrease	NR [NR]	N
1188	chr17	79045772	79045773	rs55748329	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	17q25.3	NR	rs55748329-A	NR	1E-9		6.101	z score increase	Affymetrix [10847151] (imputed)	N
1188	chr17	79046373	79046374	rs12051698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	17q25.3	NR	rs12051698-G	NR	9E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1188	chr17	79046373	79046374	rs12051698	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	17q25.3	BAIAP2	rs12051698-C	0.650116	4E-8	(-122 ms)	0.0320986	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1188	chr17	79046642	79046643	rs8071546	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q25.3		rs8071546-A	NR	8E-10		0.0167	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1188	chr17	79049526	79049527	rs4969243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	17q25.3		rs4969243-A	0.422787	3E-9		0.0168832	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
1188	chr17	79050147	79050148	rs8079781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q25.3	Intergenic	rs8079781-T	0.2534	1E-8	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1188	chr17	79050472	79050473	rs4969373	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q25.3	NR	rs4969373-A	NR	7E-9		5.784	z score increase	Affymetrix [10847151] (imputed)	N
1188	chr17	79051465	79051466	rs4969374	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.3	NR	rs4969374-?	NR	4E-7		5.085	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1188	chr17	79072593	79072594	rs9319615	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	17q25.3		rs9319615-A	0.45	3E-8				NR [NR] (imputed)	N
1188	chr17	79072593	79072594	rs9319615	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	17q25.3		rs9319615-A	0.45	3E-11		0.01	% increase	NR [NR] (imputed)	N
1188	chr17	79072593	79072594	rs9319615	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		17q25.3	BAIAP2	rs9319615-A	0.446918	1E-8		0.0078364	[0.0051-0.0105] unit increase	Affymetrix [12370749]	N
1188	chr17	79073181	79073182	rs7502214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q25.3	Intergenic	rs7502214-C	0.2631	8E-13	(MTAG)	0.0146	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1188	chr17	79073181	79073182	rs7502214	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q25.3	Intergenic	rs7502214-G	0.7369	9E-12		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1188	chr17	79076775	79076776	rs4969386	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	2E-9				NR [NR]	N
1188	chr17	79076775	79076776	rs4969386	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	1E-8				NR [NR]	N
1188	chr17	79076775	79076776	rs4969386	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	1E-8				NR [NR]	N
1188	chr17	79076775	79076776	rs4969386	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	1E-8				NR [NR]	N
1188	chr17	79076775	79076776	rs4969386	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	5E-9				NR [NR]	N
1188	chr17	79076775	79076776	rs4969386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17q25.3		rs4969386-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1188	chr17	79082080	79082081	rs7502590	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q25.3	BAIAP2	rs7502590-A	NR	4E-9		0.010201	[0.0068-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
1188	chr17	79082080	79082081	rs7502590	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q25.3	NR	rs7502590-G	NR	3E-8		0.01801	[0.012-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
1188	chr17	79082080	79082081	rs7502590	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q25.3	AATK, BAIAP2	rs7502590-A	0.8526199999999999	2E-14		7.669	z score increase	Illumina [18485882] (imputed)	N
1188	chr17	79084366	79084367	rs3935190	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q25.3		rs3935190-G	0.477	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1188	chr17	79084366	79084367	rs3935190	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	17q25.3	BAIAP2	rs3935190-A		3E-17		0.0072	[0.0054-0.009] unit increase	Affymetrix [13304133] (imputed)	N
1188	chr17	79084366	79084367	rs3935190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs3935190-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1188	chr17	79084366	79084367	rs3935190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.3		rs3935190-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1188	chr17	79084366	79084367	rs3935190	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.3	NA	rs3935190-A	0.537	9E-16		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1188	chr17	79084573	79084574	rs56084168	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	17q25.3	NR	rs56084168-T	0.1478	1E-10		0.0123	[0.0086-0.016] unit decrease	NR [8968716] (imputed)	N
1188	chr17	79084573	79084574	rs56084168	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	17q25.3	NR	rs56084168-T	NR	2E-9		0.01968	NR unit decrease	NR [7259579]	N
1188	chr17	79084573	79084574	rs56084168	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q25.3	NR	rs56084168-T	NR	2E-10		0.02129	[0.015-0.028] unit decrease	Affymetrix [10847151] (imputed)	N
1188	chr17	79084573	79084574	rs56084168	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q25.3	NR	rs56084168-T	NR	3E-16		8.195	z score decrease	Affymetrix [10847151] (imputed)	N
1188	chr17	79084573	79084574	rs56084168	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q25.3	BAIAP2	rs56084168-T	0.147994	7E-13		7.18	z score decrease	NR [10847151] (imputed)	N
1188	chr17	79084573	79084574	rs56084168	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	17q25.3	BAIAP2	rs56084168-T	0.147994	5E-8		5.47	z score decrease	NR [10847151] (imputed)	N
1188	chr17	79087035	79087036	rs7503580	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q25.3	BAIAP2	rs7503580-C	0.841844	9E-9		0.0111158	[0.0073-0.0149] unit decrease	Affymetrix [12370749]	N
1188	chr17	79087536	79087537	rs4076427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	17q25.3		rs4076427-C	NR	1E-19		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1188	chr17	79087536	79087537	rs4076427	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	17q25.3	NA	rs4076427-C	0.3954	4E-15		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1188	chr17	79090197	79090198	rs62073016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	17q25.3		rs62073016-T	NR	5E-18		0.0117	[0.0092-0.0142] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1188	chr17	79090197	79090198	rs62073016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q25.3	NR	rs62073016-?	NR	7E-6	(male)	0.16136	[0.091-0.232] unit decrease	Affymetrix [7794483] (imputed)	N
1188	chr17	79090197	79090198	rs62073016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q25.3	NR	rs62073016-?	NR	6E-11		0.14845	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1188	chr17	79090197	79090198	rs62073016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	17q25.3	NR	rs62073016-?	NR	1E-8	(female)	0.14239	[0.094-0.191] unit decrease	Affymetrix [7794483] (imputed)	N
1188	chr17	79090197	79090198	rs62073016	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q25.3	NR	rs62073016-T	NR	2E-8		5.633	z score increase	Affymetrix [10847151] (imputed)	N
1188	chr17	79092462	79092463	rs62073017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs62073017-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1188	chr17	79093821	79093822	rs36000545	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q25.3	AATK	rs36000545-A	0.6043	3E-29		0.022	[0.018-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1188	chr17	79093821	79093822	rs36000545	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	17q25.3	AATK	rs36000545-A	0.604	4E-18		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1188	chr17	79093821	79093822	rs36000545	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	17q25.3	AATK	rs36000545-A	0.604	5E-13		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1188	chr17	79095628	79095629	rs7503604	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	17q25.3	AATK	rs7503604-C	0.488391	6E-10		0.0129437	[0.0088-0.0171] unit decrease	NR [16516521] (imputed)	N
1188	chr17	79097768	79097769	rs66530963	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q25.3	NR	rs66530963-G	0.149211419072932	6E-15		0.01609482	[0.012-0.02] unit decrease	NR [NR]	N
1188	chr17	79097768	79097769	rs66530963	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	17q25.3	NR	rs66530963-G	0.149211419072932	6E-14		0.013149287	[0.0097-0.0166] unit decrease	NR [NR]	N
1188	chr17	79097768	79097769	rs66530963	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	17q25.3	NR	rs66530963-G	0.149211419072932	1E-14		0.010244516	[0.0077-0.0128] unit decrease	NR [NR]	N
1188	chr17	79098151	79098152	rs9901521	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	17q25.3	BAIAP2, AATK	rs9901521-?	NR	4E-8		0.0276292	[0.018-0.038] unit increase	Affymetrix [25921788] (imputed)	N
1188	chr17	79098151	79098152	rs9901521	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q25.3	NR	rs9901521-T	NR	4E-10		6.245	z score increase	Affymetrix [10847151] (imputed)	N
1188	chr17	79118572	79118573	rs7220048	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	17q25.3	AATK	rs7220048-G	0.496	9E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
1188	chr17	79122995	79122996	rs4969405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q25.3	AATK	rs4969405-T	0.41978	1E-10		0.014481586	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1188	chr17	79122995	79122996	rs4969405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q25.3	AATK	rs4969405-T	0.419796	2E-9		0.013491505	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1188	chr17	79123134	79123135	rs4969407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q25.3	AATK	rs4969407-T	0.422281	4E-9		0.013273094	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1188	chr17	79125115	79125116	rs59549421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q25.3	NR	rs59549421-G	0.419152	2E-10		0.013225	[0.0091-0.0173] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1188	chr17	79131973	79131974	rs11650927	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		AATK	rs11650927-A	0.37	3E-6		0.1	[0.061-0.139] unit increase	Illumina [3700000] (imputed)	N
1188	chr17	79136951	79136952	rs2859612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q25.3		rs2859612-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1189	chr17	79168267	79168268	rs2279913	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	NR	rs2279913-C	0.439263302273741	4E-7	(IGP35)	0.1579	[0.097-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
1189	chr17	79173461	79173462	rs906175	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA		C17orf89, CEP131, ENTHD2	rs906175-T	0.48	1E-7		1.58	[1.33-1.87]	Illumina [2292247] (imputed)	N
1189	chr17	79184817	79184818	rs8071210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs8071210-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1189	chr17	79192429	79192430	rs2725391	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals		SLC38A10, CEP131, TEPSIN	rs2725391-T	0.46	1E-15		0.133	[NR] unit increase	Illumina [up to 741151] (imputed)	N
1189	chr17	79192445	79192446	rs9319617	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	17q25.3	AZI1	rs9319617-C	0.52	3E-9				Illumina [NR]	N
1189	chr17	79192445	79192446	rs9319617	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	17q25.3	AZI1	rs9319617-C	0.52	3E-9				Illumina [NR]	N
1189	chr17	79205420	79205421	rs61745945	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	ENTHD2	rs61745945-A	0.016	6E-19	(AP-4 complex accessory subunit tepsin, ENTHD2.7947.19.3)	0.88	[0.68-1.08] unit decrease	Affymetrix [10572788] (imputed)	N
1189	chr17	79213304	79213305	rs2659009	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	17q25.3	AZI1	rs2659009-A	0.5	4E-11				Illumina [NR]	N
1189	chr17	79218713	79218714	rs2659005	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA		NR	rs2659005-C	0.517358149665924	3E-7	(IGP24)	0.1648	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
1189	chr17	79218713	79218714	rs2659005	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA		NR	rs2659005-C	0.517323975066785	4E-7	(IGP26)	0.1653	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
1189	chr17	79218713	79218714	rs2659005	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA		NR	rs2659005-C	0.517316186025812	2E-6	(IGP17)	0.1537	[0.09-0.217] unit decrease	Illumina [~ 2500000] (imputed)	N
1189	chr17	79218713	79218714	rs2659005	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA		NR	rs2659005-C	0.517261684187082	9E-6	(IGP29)	0.1441	[0.08-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
1189	chr17	79220223	79220224	rs2725405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q25.3		rs2725405-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1189	chr17	79235787	79235788	rs7224668	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	17q25.3	SLC38A10	rs7224668-C	0.524575415405165	3E-8	(IGP31)	0.1729	[0.11-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
1189	chr17	79257879	79257880	rs61698755	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	17q25.3		rs61698755-?	NR	2E-8		0.011465	[0.0074-0.0155] unit increase	NR [6912294] (imputed)	N
1189	chr17	79261808	79261809	rs10445407	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	17q25.3	SLC38A10	rs10445407-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1189	chr17	79287078	79287079	rs8075897	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	17q25.3	TMEM105	rs8075897-T	0.29	8E-6		0.82	[0.47-1.17] g/day increase	Affymetrix [10353649] (imputed)	N
1190	chr17	79328963	79328964	rs9898002	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	17q25.3	NR	rs9898002-G	0.188829	3E-11		0.0262127	[0.018-0.034] unit decrease	NR [19129689] (imputed)	N
1190	chr17	79331666	79331667	rs4969449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q25.3		rs4969449-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1190	chr17	79338468	79338469	rs11652437	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q25.3	RP11-1055B8.2	rs11652437-A	NR	2E-8		0.018837	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1190	chr17	79340324	79340325	rs117272076	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.3		rs117272076-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1190	chr17	79354453	79354454	rs67944653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q25.3		rs67944653-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1190	chr17	79355293	79355294	rs11657342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q25.3		rs11657342-A	0.367	2E-13		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1190	chr17	79357994	79357995	rs11649807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	17q25.3		rs11649807-G	NR	5E-8		0.0471	[0.03-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1190	chr17	79357994	79357995	rs11649807	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	17q25.3	RP11-1055B8.3	rs11649807-G	0.370876	5E-8		0.04711686	[0.03-0.064] unit decrease	Affymetrix [7288503] (imputed)	N
1190	chr17	79361331	79361332	rs57067187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q25.3	RP11-1055B8.4	rs57067187-C	NR	2E-12		0.0225053	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
1190	chr17	79361331	79361332	rs57067187	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	17q25.3	BAHCC1	rs57067187-T	0.63	7E-9		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1190	chr17	79361331	79361332	rs57067187	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	17q25.3	BAHCC1	rs57067187-T	0.63	1E-8		0.032	[0.021-0.043] unit increase	Affymetrix [at least 8900000] (imputed)	N
1190	chr17	79366662	79366663	rs68007459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs68007459-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1190	chr17	79367408	79367409	rs112280096	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	17q25.3	RP11-1055B8.6	rs112280096-A	0.3604	1E-10		0.1706	[0.12-0.22] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1190	chr17	79370256	79370257	rs113458760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q25.3		rs113458760-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1190	chr17	79371209	79371210	rs8074440	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.3	NR	rs8074440-C	0.5239	3E-6	(EA)	0.0353	[0.02-0.05] unit increase	Illumina [~ 11800000] (imputed)	N
1190	chr17	79372488	79372489	rs11657730	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	17q25.3	LOC100130370, BAHCC1	rs11657730-?	NR	2E-8				NR [~ 24000000] (imputed)	N
1190	chr17	79372572	79372572	rs782787180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	RP11-1055B8.6	rs782787180-C	NR	2E-8		0.0178541	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1190	chr17	79373202	79373203	rs182760976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	RP11-1055B8.6	rs182760976-A	NR	2E-10		0.0182767	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1190	chr17	79373961	79373962	rs34386017	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q25.3	RP11-1055B8.7, RP11-1055B8.6	rs34386017-A	0.294402	3E-10		0.015422488	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr17	79373961	79373962	rs34386017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs34386017-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1190	chr17	79375625	79375625	rs10664154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	17q25.3		rs10664154-ACT	NR	5E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1190	chr17	79375625	79375625	rs10664154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	17q25.3		rs10664154-ACT	NR	8E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1190	chr17	79375625	79375625	rs10664154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	17q25.3		rs10664154-ACT	NR	3E-9		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1190	chr17	79375625	79375625	rs10664154	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	17q25.3	NR	rs10664154-?		2E-11		0.0154523	[0.011-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1190	chr17	79375997	79375998	rs1701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	RP11-1055B8.7	rs1701-A	NR	6E-9		0.0172675	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1190	chr17	79380546	79380547	rs1531554	28081371	Sanders AE	2017-01-12	J Dent Res	GWAS Identifies New Loci for Painful Temporomandibular Disorder: Hispanic Community Health Study/Study of Latinos.	Temporomandibular joint disorder	769 Hispanic cases, 9,384 Hispanic controls	768 European ancestry cases, 4,845 European ancestry controls, 144 Hispanic/Latin American cases, 492 Hispanic/Latin American controls, 999 cases, 2,031 controls	17q25.3	BAHCC1	rs1531554-C	0.524	3E-8	(Hispanic women)	1.4749264		Illumina [2100000] (imputed)	N
1190	chr17	79381916	79381917	rs6565564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	17q25.3		rs6565564-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1190	chr17	79382415	79382416	rs34224566	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q25.3	RP11-1055B8.6, RP11-1055B8.7	rs34224566-?		4E-9				NR [7428630] (imputed)	N
1190	chr17	79394535	79394536	rs7212578	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	BAHCC1	rs7212578-A	0.215947	2E-18		0.0196552	[0.015-0.024] unit decrease	NR [13737936] (imputed)	N
1190	chr17	79394535	79394536	rs7212578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs7212578-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1190	chr17	79394535	79394536	rs7212578	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs7212578-?	NR	4E-19		0.021686	[0.017-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1190	chr17	79400620	79400621	rs112222327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q25.3		rs112222327-T	NR	1E-9		0.0146	[0.0099-0.0193] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1190	chr17	79400620	79400621	rs112222327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.3	RP11-1055B8.7	rs112222327-T	0.161247	5E-9		0.01769244	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1190	chr17	79400620	79400621	rs112222327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q25.3	NR	rs112222327-T	0.161542	5E-11		0.017907	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1190	chr17	79402602	79402603	rs77984483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.3		rs77984483-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1190	chr17	79405683	79405684	rs75996683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.3	RP11-1055B8.7	rs75996683-T	0.162194	3E-10		0.0191472	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1190	chr17	79412884	79412885	rs28507130	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q25.3	BAHCC1	rs28507130-A	0.3657	7E-23		0.0197	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
1190	chr17	79418259	79418260	rs6565571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs6565571-G	NR	4E-13		0.0215	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1190	chr17	79418598	79418599	rs28576195	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q25.3	BAHCC1	rs28576195-T	0.3834	4E-8		0.014496166	[0.0093-0.0197] unit increase	Affymetrix [~ 11515000] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	17q25.3	BAHCC1	rs35572189-G	0.637	9E-9	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	17q25.3	BAHCC1	rs35572189-A	0.3641	3E-8		0.0119865	[0.0077-0.0162] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17q25.3	BAHCC1	rs35572189-A	0.3615	2E-6		0.0052	[0.003-0.0074] unit increase	Affymetrix [~ 7740000] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	17q25.3	BAHCC1	rs35572189-A	0.368	8E-10	(EA)	0.03454	[0.024-0.046] unit increase	Affymetrix [up to 12500000] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	17q25.3	BAHCC1	rs35572189-A	0.3629	1E-8		0.013307061	[0.0088-0.0179] unit increase	Affymetrix [11514936] (imputed)	N
1190	chr17	79419024	79419025	rs35572189	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	17q25.3	BAHCC1	rs35572189-G	0.638	1E-9		0.01051	[0.0071-0.0139] unit increase	Affymetrix [11709857] (imputed)	N
1190	chr17	79419159	79419185	rs142997686	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	17q25.3	BAHCC1	rs142997686-?	0.384	5E-9		5.84	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1190	chr17	79421253	79421254	rs8077636	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	17q25.3	NR	rs8077636-T	0.417281	1E-9		0.0421829	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
1190	chr17	79426021	79426022	rs34202212	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs34202212-?	NR	7E-18		0.0211411	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
1190	chr17	79426021	79426022	rs34202212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q25.3	BAHCC1	rs34202212-GC	0.661572	6E-10		0.0219744	[0.015-0.029] unit increase	NR [17166351] (imputed)	N
1190	chr17	79426021	79426022	rs34202212	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	17q25.3	BAHCC1	rs34202212-GC	0.660858	4E-6	(women)	0.0223509	[0.013-0.032] unit increase	NR [17166351] (imputed)	N
1191	chr17	79457542	79457543	rs11150789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs11150789-G	NR	3E-12		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1191	chr17	79457542	79457543	rs11150789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	17q25.3	NR	rs11150789-G	NR	2E-12		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1191	chr17	79469117	79469118	rs6565586	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	17q25.3	ACTG1	rs6565586-A	0.247	1E-8		0.1556	[0.1-0.21] kg increase	Affymetrix [at least 17000000] (imputed)	N
1191	chr17	79477355	79477356	rs1140892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q25.3		rs1140892-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1191	chr17	79478805	79478806	rs117809695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.3		rs117809695-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	17q25.3		rs11657440-C	NR	1E-73		0.0384	[0.034-0.043] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	17q25.3		rs11657440-C	NR	5E-30		0.0241	[0.02-0.028] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	17q25.3	ACTG1	rs11657440-T	0.582429	5E-83		0.00995636	[0.0089-0.011] unit decrease	Affymetrix [13995440] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	17q25.3	ACTG1	rs11657440-T	0.58242	1E-32		0.00458684	[0.0038-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	17q25.3	ACTG1, FSCN2	rs11657440-C	0.42	7E-25		10.3	z-score increase	Affymetrix [4312306] (imputed)	N
1191	chr17	79480685	79480686	rs11657440	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q25.3	ACTG1	rs11657440-?		4E-10		0.031	[0.021-0.041] unit increase	Illumina [31500000] (imputed)	N
1191	chr17	79481002	79481003	rs62076019	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q25.3	NR	rs62076019-G	0.601395	4E-8		0.0156391	[0.0096-0.0217] unit increase	Affymetrix [16577313] (imputed)	N
1191	chr17	79481771	79481772	rs10153315	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	17q25.3	ACTG1, FSCN2	rs10153315-?		2E-10		0.0385	[0.027-0.05] unit increase	Illumina [31500000] (imputed)	N
1191	chr17	79481771	79481772	rs10153315	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	17q25.3	NR	rs10153315-T	0.581553	3E-24		0.00780562	[0.0062-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
1191	chr17	79481771	79481772	rs10153315	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	17q25.3	NR	rs10153315-T	0.580864	8E-16		0.00934357	[0.007-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
1191	chr17	79481771	79481772	rs10153315	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	17q25.3	NR	rs10153315-T	0.581553	6E-20		0.00798089	[0.0062-0.0098] unit increase	Affymetrix [16582965] (imputed)	N
1191	chr17	79481771	79481772	rs10153315	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	17q25.3	NR	rs10153315-T	0.580864	9E-11		0.00924201	[0.0065-0.012] unit increase	Affymetrix [16585866] (imputed)	N
1191	chr17	79483998	79483999	rs7342974	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs7342974-C	0.439	1E-8	(ACTG1)	0.02537	NR unit increase	Illumina [1671387] (imputed)	N
1191	chr17	79493306	79493307	rs36013981	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	17q25.3	NR	rs36013981-A	0.60381	8E-11		0.00646497	[0.0042-0.0087] unit increase	Affymetrix [16582621] (imputed)	N
1191	chr17	79493306	79493307	rs36013981	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	17q25.3	NR	rs36013981-A	0.60381	4E-10		0.00673573	[0.0043-0.0091] unit increase	Affymetrix [16582614] (imputed)	N
1191	chr17	79495968	79495969	rs143796236	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	17q25.3	FSCN2	rs143796236-T	0.74	7E-10	(additive)	1.2	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1191	chr17	79505188	79505189	rs11654087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs11654087-T	NR	4E-16		0.0197	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1191	chr17	79508399	79508400	rs14422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs14422-C	NR	1E-13		0.0301	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1191	chr17	79522146	79522147	rs60016321	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q25.3	NR	rs60016321-C		1E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
1191	chr17	79525659	79525660	rs3208787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q25.3		rs3208787-G	NR	3E-13		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.16555	1E-13		0.022161098	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.165468	1E-17		0.0253987	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.165588	4E-12		0.020768747	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.165539	5E-11		0.019813158	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.165465	7E-12		0.020873	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.165459	3E-11		0.019714067	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs3208787-A	0.82619	5E-17				Affymetrix, Illumina [22063850] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.3	NR	rs3208787-A	0.835089	2E-19		0.02421	[0.019-0.029] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.223571	4E-20				Affymetrix, Illumina [24332387] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.164168	6E-21		0.024696	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.216037	8E-14				Affymetrix, Illumina [24246363] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.164161	7E-16		0.020901	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.21589	1E-12				Affymetrix, Illumina [20825802] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.3	NR	rs3208787-G	0.164102	3E-14		0.019936	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs3208787-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs3208787-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.3		rs3208787-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q25.3	NPLOC4	rs3208787-G	NR	8E-9		0.0288766	[0.018-0.039] unit decrease	Affymetrix [16832071] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.1657	1E-11		0.03248959	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1191	chr17	79525659	79525660	rs3208787	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q25.3	NPLOC4	rs3208787-G	0.1657	1E-9		0.02899962	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1191	chr17	79526820	79526821	rs6565597	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	17q25.3	NPLOC4, TSPAN10	rs6565597-?	NR	2E-11	(EA)	1.13		Illumina [12023830] (imputed)	N
1191	chr17	79527722	79527723	rs34450012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	17q25.3		rs34450012-C	NR	3E-10		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1191	chr17	79530992	79530993	rs8070929	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	17q25.3		rs8070929-T	0.36238	1E-8		0.040122	[0.026-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
1191	chr17	79530992	79530993	rs8070929	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	17q25.3	NR	rs8070929-?	NR	8E-13		0.199899	[0.15-0.25] unit increase	NR [13958389] (imputed)	N
1191	chr17	79538840	79538841	rs9911460	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q25.3	NR	rs9911460-A		7E-19		0.1	[0.08-0.12] unit increase	NR [NR]	N
1191	chr17	79542812	79542813	rs12949956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q25.3	Intergenic	rs12949956-T	0.5099	3E-14	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1191	chr17	79542812	79542813	rs12949956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q25.3	Intergenic	rs12949956-C	0.4902	3E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1191	chr17	79542812	79542813	rs12949956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q25.3	Intergenic	rs12949956-C	0.4904	8E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1191	chr17	79549249	79549250	rs34635363	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		17q25.3	NPLOC4	rs34635363-G	0.641	2E-9		0.018	[0.012-0.024] dioptres decrease	NR [5900115] (imputed)	N
1191	chr17	79557042	79557043	rs67050149	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q25.3	NPLOC4	rs67050149-C	0.6402	7E-12		0.096	[0.067-0.125] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1192	chr17	79564929	79564930	rs71373084	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	17q25.3		rs71373084-G	0.36023	3E-7		0.035478	[0.022-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
1192	chr17	79564929	79564930	rs71373084	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	17q25.3	NPLOC4	rs71373084-?	0.358	2E-12		1.0732688	[1.05-1.09]	Affymetrix [NR] (imputed)	N
1192	chr17	79572252	79572253	rs11650127	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	17q25.3	NPLOC4	rs11650127-?	NA	5E-11		1.96	[1.37-2.55] unit decrease	Affymetrix [5541230] (imputed)	N
1192	chr17	79577126	79577127	rs8077038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q25.3	Intergenic	rs8077038-T	0.4912	5E-16	(MTAG)	0.0134	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr17	79577126	79577127	rs8077038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q25.3	Intergenic	rs8077038-T	0.4924	4E-10	(MTAG)	0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr17	79578286	79578287	rs112364254	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q25.3		rs112364254-A	0.36	2E-17		8.5	z score increase	Affymetrix [9061022] (imputed)	N
1192	chr17	79578286	79578287	rs112364254	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q25.3	NR	rs112364254-A	0.3587	1E-17				NR [9056863] (imputed)	N
1192	chr17	79578286	79578287	rs112364254	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	17q25.3	NPLOC4	rs112364254-A	NR	2E-18	(female)	1.0440593	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
1192	chr17	79583370	79583371	rs7503221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	17q25.3		rs7503221-A	NR	1E-13		0.0778	[0.057-0.098] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
1192	chr17	79583472	79583473	rs7503894	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	17q25.3	NR	rs7503894-C	0.65	2E-29		0.56	[0.46-0.66] unit increase	Affymetrix [9231066] (imputed)	N
1192	chr17	79583472	79583473	rs7503894	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	17q25.3	NR	rs7503894-C	0.65	4E-22		0.37	[0.29-0.45] unit increase	Affymetrix [9231066] (imputed)	N
1192	chr17	79583472	79583473	rs7503894	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	17q25.3	NR	rs7503894-C	0.65	2E-29		0.56	[0.46-0.66] unit increase	Affymetrix [9231066] (imputed)	N
1192	chr17	79585491	79585492	rs75078292	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	17q25.3	NR	rs75078292-A	0.35	2E-8	(EA)	1.25	[1.16-1.36]	Affymetrix [7469170] (imputed)	N
1192	chr17	79589241	79589242	rs6565604	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	17q25.3		rs6565604-?	NR	3E-6		1.05229	[1.03-1.07]	NR [685523]	N
1192	chr17	79590605	79590606	rs8075598	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	17q25.3	NPLOC4	rs8075598-?	NR	3E-10		0.03284	[0.023-0.043] unit increase novel	Illumina [6108953] (imputed)	N
1192	chr17	79596810	79596811	rs9894429	20463881	Liu F	2010-05-16	PLoS Genet	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	17q25.3	NPLOC4, HGS	rs9894429-T	NR	9E-14	(CHS1)	0.12	[NR] % increase	Illumina [2543887] (imputed)	N
1192	chr17	79602062	79602063	rs9905786	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	17q25.3	NPLOC4	rs9905786-T	0.64	5E-25		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1192	chr17	79603830	79603831	rs9895741	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		NPLOC4	rs9895741-G	NR	1E-42		0.95	[0.94-0.96]	Affymetrix [9869154] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q25.3	TMEM105, BAHCC1, ACTG1, FSCN2, NPLOC4, TSPAN10, PDE6G, CCDC137, OXLD1, ARL16, HGS, MRPL12, SLC25A10, LRRC45, DCXR, RAC3, DUS1L, FASN, CCDC57, SLC16A3	rs9747347-?		2E-50				Affymetrix, Illumina [NR] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.3		rs9747347-?	NR	6E-279				NR [~ 8900000] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q25.3	TSPAN10	rs9747347-T	0.3578	3E-21		1.12	NR	Affymetrix [9154080] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	17q25.3	TSPAN10	rs9747347-?		2E-9	(Hair color phototype score)	0.5263	[0.36-0.7] unit decrease	Illumina [9499600] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	17q25.3	TSPAN10	rs9747347-?		1E-8	(Hair color (black))	0.32057112	[0.21-0.43] unit decrease	Illumina [9499600] (imputed)	N
1192	chr17	79606819	79606820	rs9747347	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	17q25.3	NPLOC4, TSPAN10	rs9747347-?	NR	2E-18		1.074	[1.057-1.092]	Illumina [13762925] (imputed)	N
1192	chr17	79607599	79607600	rs7211615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs7211615-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1192	chr17	79611270	79611271	rs62075722	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	17q25.3	TSPAN10	rs62075722-A	0.3571	8E-70		1.261	NR	Affymetrix [9154080] (imputed)	N
1192	chr17	79611270	79611271	rs62075722	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		17q25.3	TSPAN10	rs62075722-A	0.358	2E-13		0.022	[0.016-0.028] dioptres increase	NR [5901671] (imputed)	N
1192	chr17	79611270	79611271	rs62075722	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	17q25.3	TSPAN10	rs62075722-G	NR	8E-9		1.075	[1.051-1.100]	NR [5921785] (imputed)	N
1192	chr17	79611325	79611326	rs62075723	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	17q25.3	NR	rs62075723-A	0.6304	6E-13		0.0568	[0.041-0.072] unit increase	Illumina [~ 10600000] (imputed)	N
1192	chr17	79612396	79612397	rs6420484	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	17q25.3		rs6420484-G	0.645	8E-90	(EA)	0.161	[0.15-0.18] unit decrease	Illumina [11532091] (imputed)	N
1192	chr17	79612396	79612397	rs6420484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q25.3		rs6420484-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1192	chr17	79612396	79612397	rs6420484	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	17q25.3	TSPAN10	rs6420484-A	0.3554	3E-9		5.943	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1192	chr17	79614937	79614938	rs201259422	26567291	Jensen RA	2015-11-13	Circ Cardiovasc Genet	Novel Genetic Loci Associated With Retinal Microvascular Diameter.	Central retinal vein equivalent	14,740 European ancestry individuals, 5,113 Asian ancestry individuals, 3,345 African American individuals, 1,077 Hispanic individuals	5,472 European ancestry individuals	17q25.3	TSPAN10	rs201259422-A	NR	4E-9		0.06	[0.04-0.08] unit decrease	Illumina [223566]	N
1192	chr17	79615571	79615572	rs7405453	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q25.3		rs7405453-A	0.35	1E-26		10.69	z score increase	Affymetrix [9061022] (imputed)	N
1192	chr17	79615571	79615572	rs7405453	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q25.3		rs7405453-A	0.35	4E-20		9.19	z score increase	Affymetrix [9061022] (imputed)	N
1192	chr17	79615571	79615572	rs7405453	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q25.3	NR	rs7405453-A	0.3632	1E-17				NR [9056863] (imputed)	N
1192	chr17	79615571	79615572	rs7405453	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	17q25.3		rs7405453-?	NR	2E-48				NR [9705931] (imputed)	N
1192	chr17	79615571	79615572	rs7405453	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q25.3	TSPAN10	rs7405453-?	NR	1E-118		1.572	[1.43-1.71] unit decrease	Affymetrix [11100000] (imputed)	N
1192	chr17	79615571	79615572	rs7405453	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	17q25.3	TSPAN10	rs7405453-A	0.3611	2E-13		0.1041	[0.076-0.133] unit increase	Affymetrix [~ 11900000] (imputed)	N
1192	chr17	79622369	79622370	rs35763415	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q25.3	PDE6G	rs35763415-T	0.4119	7E-19		1.072	NR	Affymetrix [9154080] (imputed)	N
1192	chr17	79622369	79622370	rs35763415	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q25.3	Intergenic	rs35763415-T	0.4113	2E-8	(MTAG)	0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1192	chr17	79628478	79628479	rs562698611	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	17q25.3	PDE6G	rs562698611-G	0.358	2E-13		1.228684	[1.161475-1.299783]	Affymetrix [NR] (imputed)	N
1192	chr17	79636652	79636653	rs62080209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	17q25.3		rs62080209-A	0.831304	4E-9		0.0317028	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
1192	chr17	79641533	79641534	rs7503139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	17q25.3		rs7503139-C	0.832772	4E-13		0.0398512	[0.029-0.051] unit increase	NR [11722792] (imputed)	N
1192	chr17	79644452	79644453	rs60376522	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs60376522-C	0.01568	1E-8	(PRDX3)	1.612	NR unit increase	Illumina [1671387] (imputed)	N
1192	chr17	79660608	79660609	rs145607073	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FVC)	371,898 European ancestry individuals	NA	17q25.3		rs145607073-?	NR	2E-8		0.229331	[0.15-0.31] unit decrease	NR [9800000] (imputed)	N
1192	chr17	79667274	79667275	rs62077184	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q25.3	NR	rs62077184-?	NR	6E-6		4.522	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1192	chr17	79673422	79673423	rs73354145	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		17q25.3	MRPL12	rs73354145-?	NR	3E-7		0.018	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1192	chr17	79673422	79673423	rs73354145	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		17q25.3	MRPL12	rs73354145-?	NR	2E-7		0.032	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1192	chr17	79682050	79682051	rs3204270	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA		SLC25A10	rs3204270-?	NR	5E-6	(Comparatively Older)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1192	chr17	79686551	79686552	rs11868178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs11868178-C	NR	2E-9		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1192	chr17	79686664	79686665	rs67519107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q25.3		rs67519107-T	NR	3E-8		0.019	[0.012-0.026] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1193	chr17	79760831	79760832	rs151106468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q25.3		rs151106468-A	NR	4E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1193	chr17	79760831	79760832	rs151106468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs151106468-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1193	chr17	79768847	79768848	rs2272030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2272030-G	0.184202	5E-11				Affymetrix, Illumina [24653286] (imputed)	N
1193	chr17	79768847	79768848	rs2272030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q25.3	NR	rs2272030-G	0.18506	4E-11		0.01689	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1193	chr17	79768847	79768848	rs2272030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs2272030-G	0.184196	4E-12				Affymetrix, Illumina [24558453] (imputed)	N
1193	chr17	79768847	79768848	rs2272030	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q25.3	NR	rs2272030-G	0.185049	9E-12		0.017503	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1193	chr17	79773760	79773760	rs559474507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q25.3	GCGR	rs559474507-GT	0.218555	3E-10		0.017264128	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1193	chr17	79775088	79775089	rs9797233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q25.3		rs9797233-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1193	chr17	79782835	79782836	rs137873912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q25.3		rs137873912-C	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1194	chr17	79904245	79904246	rs35952400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q25.3	MYADML2, AC137723.5	rs35952400-C	NR	5E-8		0.0173697	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1194	chr17	79904245	79904246	rs35952400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.3		rs35952400-?	NR	3E-30				NR [~ 8900000] (imputed)	N
1194	chr17	79905946	79905947	rs73354194	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q25.3	MYADML2	rs73354194-C	0.025159	1E-11		0.060799	[0.043-0.078] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1194	chr17	79908565	79908566	rs35406919	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q25.3	NOTUM	rs35406919-?	NR	1E-17		1.0690614	NR	Affymetrix [9154080] (imputed)	N
1194	chr17	79915628	79915629	rs36023555	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	17q25.3	NOTUM	rs36023555-G	0.589923586698861	7E-6		0.0024746	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1194	chr17	79923717	79923718	rs4239275	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q25.3	NR	rs4239275-T	0.4	1E-10		0.012	[0.0085-0.0155] unit increase	Affymetrix [2446094] (imputed)	N
1194	chr17	79923717	79923718	rs4239275	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q25.3	NR	rs4239275-T	0.4	5E-8				Affymetrix [2446094] (imputed)	N
1194	chr17	79923717	79923718	rs4239275	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q25.3	NA	rs4239275-T	0.4129	3E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1194	chr17	79929136	79929137	rs9899719	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOTUM	5,361 Icelandic ancestry individuals	NA	17q25.3		rs9899719-C	0.07753	2E-12		0.251229	[0.18-0.32] unit decrease	Illumina [7506463] (imputed)	N
1194	chr17	79934193	79934194	rs35344256	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q25.3	ASPSCR1	rs35344256-A	NR	4E-8		0.0186819	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1194	chr17	79934193	79934194	rs35344256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.3		rs35344256-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1194	chr17	79947237	79947238	rs114341171	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	NOTUM	rs114341171-G	0.94890625	3E-6	(NOTUM, 8252_2_3)	0.2652393	[0.15-0.38] unit increase	Illumina [> 1000000] (imputed)	N
1194	chr17	79949230	79949231	rs7405640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	ASPSCR1	rs7405640-T	NR	2E-10		0.0190739	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1194	chr17	79952943	79952944	rs59606152	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q25.3	ASPSCR1	rs59606152-T	0.1115	9E-21		0.0367	[0.029-0.044] unit increase	Affymetrix [19819130] (imputed)	N
1194	chr17	79952943	79952944	rs59606152	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q25.3	ASPSCR1	rs59606152-T	0.1115	6E-11		0.0255	[0.018-0.033] unit increase	Affymetrix [19819130] (imputed)	N
1194	chr17	79952943	79952944	rs59606152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q25.3		rs59606152-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1195	chr17	79954543	79954544	rs8074498	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	17q25.3		rs8074498-T	0.421	5E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1195	chr17	79954543	79954544	rs8074498	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	17q25.3	NR	rs8074498-A	0.577	7E-11		0.0073307	[0.0051-0.0095] unit decrease	NR [9732723] (imputed)	N
1195	chr17	79954543	79954544	rs8074498	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17q25.3	NR	rs8074498-A	0.574	1E-8		0.0079286	[0.0052-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
1195	chr17	79954543	79954544	rs8074498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs8074498-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1195	chr17	79959668	79959669	rs9912348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	ASPSCR1	rs9912348-C	NR	2E-8		0.0169219	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1195	chr17	79959702	79959703	rs9912553	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	17q25.3	ASPSCR1	rs9912553-G	0.7249680000000001	2E-9		0.021129	[0.014-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1195	chr17	79959702	79959703	rs9912553	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	17q25.3	ASPSCR1	rs9912553-G	0.7258169999999999	2E-6		0.013925	[0.0082-0.0196] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1195	chr17	79972900	79972901	rs9895872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	ASPSCR1	rs9895872-C	NR	2E-10		0.0181233	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1195	chr17	79974730	79974731	rs13087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	17q25.3		rs13087-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1195	chr17	79975940	79975941	rs4969474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q25.3	ASPSCR1	rs4969474-A	0.4187	1E-10		0.0123	[0.0086-0.016] unit decrease	Affymetrix [18391927] (imputed)	N
1195	chr17	79977812	79977813	rs4969471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	STRA13	rs4969471-C	NR	3E-13		0.0225648	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1195	chr17	79977812	79977813	rs4969471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	17q25.3	STRA13	rs4969471-C	NR	5E-9		0.0197052	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1195	chr17	79977812	79977813	rs4969471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q25.3	NR	rs4969471-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1195	chr17	79977812	79977813	rs4969471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs4969471-?	NR	3E-29				NR [~ 8900000] (imputed)	N
1195	chr17	79987500	79987501	rs117249618	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	17q25.3	LRRC45	rs117249618-?		3E-17		7.8	[4.7-13.1]	Illumina [NR] (imputed)	N
1195	chr17	80004093	80004094	rs12945403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q25.3	RFNG	rs12945403-T	NR	3E-9		0.0178205	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1195	chr17	80004093	80004094	rs12945403	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	RFNG	rs12945403-T	0.33748	2E-17		0.0166697	[0.013-0.021] unit increase	NR [13737936] (imputed)	N
1195	chr17	80004093	80004094	rs12945403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs12945403-?	NR	8E-15		0.0171079	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1195	chr17	80006426	80006427	rs12452625	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	17q25.3		rs12452625-A	0.011	7E-8		2.14	[1.62-2.82]	Illumina [9962324] (imputed)	N
1195	chr17	80006811	80006812	rs8069068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs8069068-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1195	chr17	80017868	80017869	rs151063790	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	17q25.3	DUS1L	rs151063790-T	0.996	7E-7		1.6533	[1-2.31] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1195	chr17	80040520	80040521	rs200897153	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	17q25.3	FASN	rs200897153-?	NR	2E-6				Illumina [83898]	N
1195	chr17	80050934	80050935	rs201878571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q25.3	NR	rs201878571-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1195	chr17	80052072	80052073	rs9905991	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Malate levels	1,937 individuals	NA	17q25.3	FASN	rs9905991-G	0.421	1E-7		0.1815	[0.11-0.25] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1195	chr17	80058235	80058236	rs6502050	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	17q25.3	NR	rs6502050-C	0.4166	4E-6		0.0164	[0.0095-0.0233] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1195	chr17	80058794	80058795	rs11653003	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	FASN	rs11653003-G	0.37875	3E-6	(FASN, 8403_18_3)	0.12003153	[0.07-0.17] unit increase	Illumina [> 1000000] (imputed)	N
1196	chr17	80086394	80086395	rs4625783	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	17q25.3	CCDC57	rs4625783-T	0.43	4E-13	(3-(4-hydroxyphenyl)lactate)	0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1196	chr17	80146088	80146089	rs4789729	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17q25.3	NR	rs4789729-?	NR	6E-6	(AA)	4.31	[3.53-5.09]	Illumina [905956]	N
1196	chr17	80166292	80166293	rs148703751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	17q25.3	CCDC57	rs148703751-T	0.2022	2E-10		0.0067	[0.0045-0.0089] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1196	chr17	80176640	80176641	rs4239020	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	17q25.3	NA	rs4239020-T	0.6848	6E-10		0.0108	[0.0075-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1196	chr17	80176640	80176641	rs4239020	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17q25.3	NR	rs4239020-?	NR	2E-6	(AA)	5.09	[4.21-5.97]	Illumina [905956]	N
1196	chr17	80177851	80177852	rs9747201	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17q25.3	NR	rs9747201-?	NR	1E-6	(AA)	5.21	[4.33-6.09]	Illumina [905956]	N
1196	chr17	80179146	80179147	rs12601558	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	17q25.3	CCDC57, SLC16A3	rs12601558-?	0.78	6E-6		1.79	[1.37-2.33]	Illumina [~ 10500000] (imputed)	N
1196	chr17	80185187	80185188	rs11077983	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	17q25.3	NR	rs11077983-?	NR	6E-7	(AA)	5.3	[4.42-6.18]	Illumina [905956]	N
1196	chr17	80189812	80189813	rs60910743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	17q25.3		rs60910743-A	NR	2E-21		0.0228	[0.018-0.028] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1196	chr17	80189894	80189895	rs79034755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q25.3	SLC16A3	rs79034755-T	0.245835	8E-10		0.015868446	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1196	chr17	80191188	80191189	rs7502052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q25.3	NR	rs7502052-G	NR	2E-18		0.0242	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1196	chr17	80191754	80191755	rs11649866	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	17q25.3	NR	rs11649866-?	NR	9E-6		1.51	[1.37-1.66]	Illumina [539000] (imputed)	N
1196	chr17	80191994	80191995	rs9674487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	17q25.3		rs9674487-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1197	chr17	80242122	80242123	rs8072599	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	17q25.3	NR	rs8072599-?	NR	2E-6	(Japanese)	0.7355	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1197	chr17	80242149	80242150	rs111231601	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q25.3	intergenic	rs111231601-C	0.0272	8E-9		0.07093482	[0.047-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1197	chr17	80245858	80245859	rs544749768	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q25.3	NR	rs544749768-?	NR	6E-6		0.0076692	[0.0044-0.011] unit increase	Affymetrix [805426] (imputed)	N
1197	chr17	80289283	80289284	rs4789763	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SECTM1	5,362 Icelandic ancestry individuals	NA	17q25.3		rs4789763-G	0.4785	4E-39		0.240707	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
1197	chr17	80289283	80289284	rs4789763	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	SECTM1	rs4789763-G	0.493	4E-30	(Secreted and transmembrane protein 1, SECTM1.13093.6.3)	0.28	[0.24-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1197	chr17	80291651	80291652	rs116473040	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	CD7	rs116473040-A	0.95484375	1E-61	(CD7, 12008_3_3)	0.9623421	[0.85-1.07] unit increase	Illumina [> 1000000] (imputed)	N
1197	chr17	80292500	80292501	rs76787525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.3	SECTM1	rs76787525-A	0.042082	8E-18		0.047571484	[0.037-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1197	chr17	80325785	80325786	rs79181084	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	17q25.3	SECTM1	rs79181084-C	0.9553125	2E-26	(SECTM1, 13093_6_3)	0.6293159	[0.51-0.74] unit increase	Illumina [> 1000000] (imputed)	N
1197	chr17	80330108	80330109	rs77272176	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SECTM1	5,362 Icelandic ancestry individuals	NA	17q25.3		rs77272176-T	0.04217	2E-42		0.622908	[0.53-0.71] unit decrease	Illumina [7506463] (imputed)	N
1197	chr17	80330881	80330882	rs79350859	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD7	5,365 Icelandic ancestry individuals	NA	17q25.3		rs79350859-C	0.0419	2E-98		0.948293	[0.86-1.04] unit decrease	Illumina [7506463] (imputed)	N
1197	chr17	80344589	80344590	rs4073961	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein P4HB	5,344 Icelandic ancestry individuals	NA	17q25.3		rs4073961-G	0.4912	3E-19		0.15328	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1197	chr17	80344739	80344740	rs7503424	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein P4HB	5,354 Icelandic ancestry individuals	NA	17q25.3		rs7503424-G	0.4467	1E-12		0.125381	[0.091-0.16] unit decrease	Illumina [7506463] (imputed)	N
1197	chr17	80347062	80347063	rs74001662	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMX3	5,367 Icelandic ancestry individuals	NA	17q25.3		rs74001662-G	0.3495	1E-104		0.395697	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
1197	chr17	80347062	80347063	rs74001662	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	17q25.3	OGFOD3	rs74001662-G	0.348	3E-31	(Thioredoxin domain-containing protein 5, TXNDC5.11212.7.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1198	chr17	80348593	80348594	rs9891189	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder x change in residence interaction	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	17q25.3	NR	rs9891189-?	NR	3E-6	(subtype 5, AA)	4.657	[NR] z score decrease	Illumina [up to 47104916] (imputed)	N
1198	chr17	80348937	80348938	rs11546697	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC5	5,362 Icelandic ancestry individuals	NA	17q25.3		rs11546697-G	0.3489	2E-38		0.232383	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1198	chr17	80377451	80377452	rs117071519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs117071519-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1198	chr17	80394555	80394556	rs373585858	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17q25.3	RAB40B, METRLN, HEXDC	rs373585858-A	0.0016	7E-6		2.0	[1.48-2.70]	Affymetrix, Illumina [16900397] (imputed)	N
1198	chr17	80405551	80405552	rs3751913	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	17q25.3	C17orf62	rs3751913-C	0.121	2E-7		1.23	[1.14-1.33]	Illumina [up to 21554489]	N
1198	chr17	80408814	80408815	rs9303029	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	17q25.3	C17orf62	rs9303029-?	0.08	4E-7	(Free IGF1)			Illumina [496032]	N
1198	chr17	80415913	80415914	rs7209788	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	17q25.3	NARF	rs7209788-T	0.07118	3E-7	(FEV1)	0.5469	NR unit decrease	Affymetrix [305158]	N
1198	chr17	80421869	80421870	rs4789693	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	17q25.3	NARF	rs4789693-C	0.274	6E-6				Affymetrix, Illumina [NR] (imputed)	N
1198	chr17	80460659	80460660	rs553780646	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD7	5,365 Icelandic ancestry individuals	NA	17q25.3		rs553780646-G	0.01353	1E-15		0.652589	[0.49-0.81] unit increase	Illumina [7506463] (imputed)	N
1198	chr17	80461934	80461935	rs8078417	31295725	Wang ZT	2019-07-11	Aging (Albany NY)	Genome-wide association study identifies CD1A associated with rate of increase in plasma neurofilament light in non-demented elders.	Change in neurofilament light levels	545 European ancestry individuals	NA	17q25.3	NARF	rs8078417-?		2E-6				Illumina [1231747]	N
1198	chr17	80462550	80462551	rs9895572	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q25.3	NR	rs9895572-T	0.03136	3E-8	(CRYM)	0.01738	NR unit increase	Illumina [1671387] (imputed)	N
1198	chr17	80477228	80477229	rs148524322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs148524322-C	0.930429	8E-13				Affymetrix, Illumina [17210439] (imputed)	N
1198	chr17	80477228	80477229	rs148524322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	17q25.3	NR	rs148524322-C	0.929234	2E-15		0.029611	[0.022-0.037] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q25.3		rs73369896-G	0.922	3E-12		0.15	[0.11-0.19] % increase	Affymetrix [NR] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q25.3	FOXK2	rs73369896-A	0.07836	1E-11		0.029163444	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q25.3	FOXK2	rs73369896-A	0.07835	8E-18		0.037250947	[0.029-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	17q25.3	FOXK2	rs73369896-A	0.078299	1E-18		0.036585	[0.029-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs73369896-A	0.0671877	4E-20				Affymetrix, Illumina [24246363] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	17q25.3	NR	rs73369896-A	0.078579	3E-20		0.033996	[0.027-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs73369896-A	0.0672709	3E-19				Affymetrix, Illumina [20825802] (imputed)	N
1199	chr17	80478876	80478877	rs73369896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	17q25.3	NR	rs73369896-A	0.078648	8E-21		0.034943	[0.028-0.042] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1199	chr17	80479630	80479630	rs372314521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	17q25.3	FOXK2	rs372314521-AC	0.455952	6E-19		0.019961108	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80479630	80479630	rs372314521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q25.3	FOXK2	rs372314521-AC	0.455937	1E-17		0.019159345	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80479630	80479630	rs372314521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	17q25.3	FOXK2	rs372314521-AC	0.455977	3E-20		0.020640569	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80479630	80479630	rs372314521	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q25.3	FOXK2	rs372314521-AC	0.455957	2E-19		0.020161355	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	FOXK2	rs9898189-G	0.644261	1E-28		0.02668967	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs9898189-C	0.358703	6E-34				Affymetrix, Illumina [22063850] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	17q25.3	NR	rs9898189-C	0.356533	3E-37		0.026153	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs9898189-?	NR	3E-27				NR [~ 8900000] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q25.3	FOXK2	rs9898189-G	NR	5E-15		0.0307176	[0.023-0.039] unit increase	Affymetrix [16832071] (imputed)	N
1199	chr17	80480515	80480516	rs9898189	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q25.3	FOXK2	rs9898189-G	0.643	3E-14		0.02838133	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1199	chr17	80483945	80483946	rs11077998	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	17q25.3	FOXK2	rs11077998-C	0.4465	4E-9		0.02138707	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1199	chr17	80484850	80484851	rs7504089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q25.3	FOXK2	rs7504089-A	0.059713	3E-13		0.034746688	[0.025-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1199	chr17	80516235	80516236	rs73371707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	17q25.3		rs73371707-A	NR	2E-18		0.037	[0.029-0.045] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1199	chr17	80516235	80516236	rs73371707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	17q25.3		rs73371707-A	NR	2E-18		0.0368	[0.029-0.045] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1199	chr17	80516235	80516236	rs73371707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q25.3	FOXK2	rs73371707-A	0.075762	8E-19		0.036929123	[0.029-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1199	chr17	80516235	80516236	rs73371707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q25.3		rs73371707-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1199	chr17	80522717	80522718	rs56979318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q25.3	FOXK2	rs56979318-T	0.4431	4E-9		0.02127601	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1199	chr17	80524183	80524184	rs78461346	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	17q25.3	NR	rs78461346-?	NR	8E-6	(AA)	1.2145	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1199	chr17	80524545	80524546	rs11652501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q25.3		rs11652501-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1199	chr17	80526356	80526357	rs878823	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	17q25.3	FOXK2	rs878823-T	NR	6E-6		0.4882478	[0.27-0.7] unit increase	Illumina [> 6200000] (imputed)	N
1199	chr17	80527355	80527356	rs12452440	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q25.3	FOXK2	rs12452440-T	0.42455	4E-21		0.0176616	[0.014-0.021] unit decrease	NR [13737936] (imputed)	N
1199	chr17	80527603	80527604	rs180989964	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	17q25.3	FOXK2	rs180989964-A	0.0029	9E-6		0.6013	[0.34-0.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1199	chr17	80529825	80529826	rs3751909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q25.3		rs3751909-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1199	chr17	80529971	80529972	rs3751908	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q25.3		rs3751908-?	NR	6E-21		0.0204081	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1199	chr17	80530428	80530429	rs3736206	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17q25.3	NR	rs3736206-T	0.364379	2E-9		0.0119093	[0.008-0.0158] unit increase	Affymetrix [15000001]	N
1199	chr17	80532115	80532116	rs11653286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs11653286-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1199	chr17	80534990	80534991	rs12602034	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q25.3	FOXK2	rs12602034-T	0.6353	4E-19		0.0176	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1199	chr17	80555476	80555477	rs62079673	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.3	NR	rs62079673-C	0.5948	1E-6	(EA)	0.0329	[0.02-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
1200	chr17	80639747	80639748	rs12937622	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs12937622-A	NR	1E-23		0.034	[0.027-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1200	chr17	80681860	80681860	rs35203608	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	17q25.3	FN3KRP, FN3K	rs35203608-CA	0.463	6E-17		0.0411	[0.031-0.051] unit increase	Illumina [7135436] (imputed)	N
1200	chr17	80682777	80682778	rs72634341	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	17q25.3	FN3KRP	rs72634341-A	0.6486	1E-12		0.0318	[0.023-0.041] unit decrease	Affymetrix, Illumina [29199641] (imputed)	N
1200	chr17	80685425	80685426	rs1046875	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	17q25.3	NR	rs1046875-?	NR	4E-9		0.07998697	[0.053-0.107] unit decrease	Illumina [22871999] (imputed)	N
1200	chr17	80685425	80685426	rs1046875	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Glycated hemoglobin levels	6,943 Chinese ancestry individuals	NA	17q25.3	FN3KRP	rs1046875-A	0.5	4E-7		0.086	[0.053-0.119] unit increase	Illumina [8045193] (imputed)	N
1200	chr17	80685425	80685426	rs1046875	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	17q25.3	FN3K	rs1046875-A	0.49	4E-17		0.08	[0.060-0.100] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	17q25.3	NR	rs1046896-?	NR	8E-9		0.07878038	[0.052-0.106] unit increase	Illumina [22871999] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	17q25.3	FN3K	rs1046896-T	0.423	2E-16		0.0399	[0.03-0.049] unit increase	Illumina [7135436] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	17q25.3	FN3KRP	rs1046896-T	0.3162	4E-64		0.028	[0.025-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	7,572 South Asian ancestry individuals	NA	17q25.3	FN3KRP	rs1046896-T	0.3677	7E-7		0.0517	[0.031-0.072] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	17q25.3	FN3KRP	rs1046896-T	0.5008	7E-10		0.0225	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	24244560	Chen P	2013-11-07	PLoS One	A study assessing the association of glycated hemoglobin A1C (HbA1C) associated variants with HbA1C, chronic kidney disease and diabetic retinopathy in populations of Asian ancestry.	Glycated hemoglobin levels	3,427 Chinese ancestry individuals, 1,735 Malay ancestry individuals, 1,520 Asian Indian ancestry individuals	NA	17q25.3	FN3K	rs1046896-T	0.47	2E-7	(HbA1c)	0.031	[0.019-0.043] unit increase	Illumina [up to 2400000] (imputed)	N
1200	chr17	80685532	80685533	rs1046896	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	17q25.3	FN3K	rs1046896-T	0.31	2E-26		0.04	[0.03-0.05] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1200	chr17	80689035	80689036	rs9909940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	17q25.3		rs9909940-T	NR	2E-166		0.0589	[0.055-0.063] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1200	chr17	80689035	80689036	rs9909940	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	17q25.3	FN3KRP	rs9909940-T	0.307	1E-116		0.0322	[0.029-0.035] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1200	chr17	80689666	80689667	rs2256833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	17q25.3		rs2256833-T	0.487297	5E-13		0.0305217	[0.022-0.039] unit decrease	Illumina [13466143] (imputed)	N
1200	chr17	80691133	80691134	rs117048639	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs117048639-T	NR	6E-10		0.0554	[0.038-0.073] unit increase	Affymetrix [9000000] (imputed)	N
1200	chr17	80693280	80693281	rs2256339	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	17q25.3	FN3K	rs2256339-T	0.475	2E-11		0.03	[0.01-0.05] % decrease	Illumina [11510031] (imputed)	N
1200	chr17	80694825	80694826	rs8067360	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	17q25.3	FN3K	rs8067360-?	NR	1E-16		0.05708	[0.044-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1200	chr17	80696691	80696692	rs7208565	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	17q25.3		rs7208565-T	0.3178	8E-11		0.1045	[0.073-0.136] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1200	chr17	80696691	80696692	rs7208565	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	17q25.3		rs7208565-T	0.3511	1E-21		0.0958	[0.076-0.115] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1200	chr17	80696691	80696692	rs7208565	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	17q25.3		rs7208565-T	0.3966	5E-10		0.0881	[0.06-0.116] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
1200	chr17	80696985	80696986	rs2253118	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q25.3	FN3K	rs2253118-G	0.632183	2E-13		0.016810076	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1200	chr17	80697457	80697458	rs113373052	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	17q25.3	FN3K	rs113373052-T	0.4662	1E-26		0.0281	[0.023-0.034] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1200	chr17	80697772	80697773	rs2263122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q25.3		rs2263122-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1200	chr17	80699237	80699238	rs145500346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs145500346-G	NR	4E-10		0.076	[0.052-0.1] unit increase	Affymetrix [9000000] (imputed)	N
1200	chr17	80702962	80702963	rs12452572	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	9,525 South Asian ancestry individuals	NA	17q25.3	FN3K	rs12452572-A	0.4139	6E-9		0.0436	[0.027-0.06] unit increase	Illumina, Perlegen [19922415] (imputed)	N
1200	chr17	80704230	80704231	rs72854324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs72854324-A	NR	2E-44		0.0585	[0.05-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1200	chr17	80708023	80708024	rs2248894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q25.3		rs2248894-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1200	chr17	80708826	80708826	rs531532863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	17q25.3	FN3K	rs531532863-CCCCTGT	0.580585	1E-26		0.024414912	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1200	chr17	80723361	80723362	rs12452314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	17q25.3	TBCD	rs12452314-G	0.289152	6E-10		0.015296259	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1200	chr17	80737550	80737551	rs72854352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs72854352-C	NR	2E-13		0.0583	[0.043-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1201	chr17	80778399	80778400	rs112286457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs112286457-C	NR	1E-10		0.0481	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
1201	chr17	80780029	80780030	rs62073990	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs62073990-G	NR	4E-21		0.0451	[0.036-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1201	chr17	80789467	80789468	rs35653278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q25.3		rs35653278-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1201	chr17	80838722	80838723	rs114001811	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs114001811-T	NR	3E-9		0.0486	[0.033-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1201	chr17	80854492	80854493	rs369813432	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	17q25.3		rs369813432-T	0.01831	3E-6		2.031	[1.51-2.733]	Affymetrix [7975321] (imputed)	N
1201	chr17	80868683	80868684	rs111873142	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	17q25.3	TBCD	rs111873142-?	NR	1E-6		3.61		Illumina [6778521] (imputed)	N
1202	chr17	80893587	80893588	rs79316200	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	17q25.3	TBCD	rs79316200-T	0.1136	8E-11		1.082	NR	Affymetrix [9154080] (imputed)	N
1202	chr17	80898087	80898088	rs9896933	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	17q25.3	TBCD	rs9896933-?		3E-8				Illumina [NR]	N
1202	chr17	80904309	80904310	rs898097	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q25.3	NR	rs898097-T	0.6532	2E-6	(EA)	0.0311	[0.018-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
1202	chr17	80921028	80921029	rs6502026	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	17q25.3	NR	rs6502026-T	0.831154	2E-8		0.0149619	[0.0097-0.0202] unit increase	Affymetrix [16583148] (imputed)	N
1202	chr17	80921486	80921487	rs72862839	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs72862839-T	NR	3E-21		0.025	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1202	chr17	80926603	80926604	rs148074667	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		B3GNTL1	rs148074667-?	NR	2E-9	(female)	2.45451	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1202	chr17	80965863	80965864	rs8068883	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety and major depressive disorders	972 European ancestry adult anxiety disorder cases, 832 adult major depressive disorder cases, 920 child anxiety disorder cases	NA	17q25.3	B3GNTL1, FLJ43681, METRNL, TBCD, ZNF750	rs8068883-T	0.32	2E-6		0.16	[0.1-0.22] unit decrease	Illumina [4710000] (imputed)	N
1202	chr17	80967168	80967169	rs145326210	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	17q25.3	B3GNTL1	rs145326210-A	0.0385134788421449	2E-6	(C_Deltaproteobacteria_HB)	0.75378	[0.45-1.06] unit decrease	Illumina [7711310] (imputed)	N
1202	chr17	80971100	80971101	rs9901502	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs9901502-C	NR	2E-42		0.0348	[0.03-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1202	chr17	80972045	80972046	rs182736485	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	17q25.3	B3GNTL1	rs182736485-T	NR	7E-9		0.401	[0.27-0.54] unit increase	NR [11024754] (imputed)	N
1202	chr17	80981248	80981249	rs147357960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	17q25.3		rs147357960-A	NR	1E-9		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1202	chr17	80988343	80988344	rs8081814	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	17q25.3	B3GNTL1	rs8081814-T	0.88	3E-6		0.66	[0.39-0.93] unit increase	Illumina [5833901] (imputed)	N
1202	chr17	80989928	80989929	rs112147313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	17q25.3	B3GNTL1	rs112147313-T	0.262793	1E-10		0.016552936	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1202	chr17	80989928	80989929	rs112147313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q25.3	NR	rs112147313-T	0.262037	2E-10		0.014455	[0.01-0.0189] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1202	chr17	80993058	80993059	rs372323640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q25.3	B3GNTL1	rs372323640-C	0.296268	5E-11		0.016896695	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1203	chr17	81002822	81002822	rs36073428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q25.3		rs36073428-CA	NR	2E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1203	chr17	81005761	81005762	rs62073440	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	17q25.3	B3GNTL1	rs62073440-?		5E-7		58.9	[35.97-81.83] unit increase	Illumina [~ 10000000] (imputed)	N
1203	chr17	81009103	81009104	rs111571253	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	17q25.3	NR	rs111571253-C	0.853646	1E-8		0.0154801	[0.01-0.021] unit decrease	Affymetrix [15000001]	N
1203	chr17	81012748	81012749	rs11077961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	17q25.3		rs11077961-G	NR	7E-12		0.0118	[0.0085-0.0151] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1203	chr17	81012748	81012749	rs11077961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.3	B3GNTL1	rs11077961-G	0.360983	2E-11		0.015584348	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81012748	81012749	rs11077961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.3		rs11077961-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1203	chr17	81018006	81018007	rs72851970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	17q25.3	NR	rs72851970-C	NR	9E-16		0.036	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1203	chr17	81040846	81040847	rs7503602	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q25.3		rs7503602-T	0.439	5E-21				Affymetrix [10369434] (imputed)	N
1203	chr17	81041937	81041938	rs66468457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q25.3		rs66468457-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1203	chr17	81043038	81043039	rs9908756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.3	METRNL	rs9908756-G	0.607814	7E-10		0.015143855	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81045853	81045854	rs8077967	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	17q25.3	METRNL	rs8077967-?	NR	2E-9		1.178	[0.63-1.72] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1203	chr17	81049740	81049741	rs4986080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q25.3		rs4986080-A	NR	3E-10		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1203	chr17	81049740	81049741	rs4986080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q25.3	METRNL	rs4986080-A	0.709804	3E-12		0.017032413	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81051006	81051007	rs7502442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	17q25.3		rs7502442-T	NR	4E-12		0.0704	[0.051-0.09] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1203	chr17	81053329	81053330	rs35204860	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	17q25.3		rs35204860-?	NR	7E-9	(Colorectal cancer)	1.11	[1.07-1.15]	Illumina [NR] (imputed)	N
1203	chr17	81053329	81053330	rs35204860	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	17q25.3		rs35204860-?	NR	3E-9	(Colorectal polyp)	1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q25.3	METRNL	rs34403018-C	0.652541	2E-12		0.016391607	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs34403018-C	0.605265	2E-16				Affymetrix, Illumina [24332387] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q25.3	NR	rs34403018-C	0.651364	5E-16		0.016687	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q25.3	NR	rs34403018-C	0.65102	6E-16		0.016694	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs34403018-C	0.608584	4E-19				Affymetrix, Illumina [24558453] (imputed)	N
1203	chr17	81054078	81054079	rs34403018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q25.3	NR	rs34403018-C	0.651131	2E-17		0.017546	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1203	chr17	81057833	81057834	rs35763419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q25.3		rs35763419-G	NR	2E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1203	chr17	81057833	81057834	rs35763419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q25.3	AC144831.1	rs35763419-G	0.653036	1E-10		0.015034974	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81057833	81057834	rs35763419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q25.3		rs35763419-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1203	chr17	81058309	81058310	rs36079436	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs36079436-C	0.603969	5E-16				Affymetrix, Illumina [24653286] (imputed)	N
1203	chr17	81058362	81058362	rs532213132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	17q25.3	NR	rs532213132-GC	0.645613	2E-8		0.016087	[0.01-0.022] unit increase	Affymetrix [16580851] (imputed)	N
1203	chr17	81061047	81061048	rs75954926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	17q25.3		rs75954926-G	NR	2E-12		0.0459	[0.033-0.059] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1203	chr17	81061047	81061048	rs75954926	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	17q25.3	METRNL	rs75954926-G	NR	4E-13		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1203	chr17	81061047	81061048	rs75954926	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	17q25.3	NR	rs75954926-?	NR	1E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
1203	chr17	81061047	81061048	rs75954926	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	17q25.3	NR	rs75954926-G	0.647	3E-18		1.09	[1.07-1.11]	Affymetrix, Illumina [16900397] (imputed)	N
1203	chr17	81062984	81062985	rs28627461	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	17q25.3	METRNL	rs28627461-?	0.681	6E-13		1.0807984	[1.06-1.1]	Affymetrix [NR] (imputed)	N
1203	chr17	81063243	81063244	rs28450305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q25.3		rs28450305-T	NR	4E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1203	chr17	81064202	81064203	rs28517505	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	17q25.3	METRNL	rs28517505-A	NR	5E-6	(female)	1.0283834	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1203	chr17	81064660	81064661	rs76409885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	17q25.3		rs76409885-T	NR	2E-10		0.0867	[0.06-0.113] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
1203	chr17	81071620	81071621	rs140646675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	17q25.3	intergenic	rs140646675-A	0.4584	4E-31		0.04694527	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1203	chr17	81072093	81072094	rs77572283	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	17q25.3	intergenic	rs77572283-C	0.459	5E-43		0.05553528	[0.048-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr17	81072093	81072094	rs77572283	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q25.3	intergenic	rs77572283-C	0.459	2E-55		0.0635356	[0.056-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1203	chr17	81075835	81075836	rs9902102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q25.3		rs9902102-C	NR	9E-10		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1203	chr17	81075835	81075836	rs9902102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	17q25.3		rs9902102-C	NR	3E-111		0.0569	[0.052-0.062] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1203	chr17	81078567	81078568	rs9674881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs9674881-T	0.488789	1E-185				Affymetrix, Illumina [23467995] (imputed)	N
1203	chr17	81078567	81078568	rs9674881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q25.3	NR	rs9674881-T	0.486067	2E-189		0.06335	[0.059-0.068] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1203	chr17	81079702	81079703	rs12946146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q25.3		rs12946146-T	0.486288	2E-78		0.048870616	[0.044-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81081454	81081455	rs9709216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs9709216-G	0.492093	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1203	chr17	81081454	81081455	rs9709216	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q25.3	NR	rs9709216-G	0.486768	1E-16		0.018123	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1203	chr17	81083853	81083854	rs9330536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	17q25.3		rs9330536-C	0.487343	2E-155		0.064350404	[0.06-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81084521	81084522	rs9747839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	17q25.3	NR	rs9747839-G	0.477523	3E-16		0.019703956	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81084521	81084522	rs9747839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q25.3	NR	rs9747839-G	0.474686	2E-15				Affymetrix, Illumina [24649327] (imputed)	N
1203	chr17	81084521	81084522	rs9747839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	17q25.3	NR	rs9747839-G	0.476185	4E-18		0.019024	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1203	chr17	81084521	81084522	rs9747839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q25.3		rs9747839-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1203	chr17	81084521	81084522	rs9747839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q25.3		rs9747839-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1203	chr17	81098460	81098461	rs9330542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q25.3	AC139099.4	rs9330542-A	0.427905	3E-12		0.016726336	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1203	chr17	81109536	81109537	rs9908212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	17q25.3		rs9908212-C	0.701	8E-29				Affymetrix [10369434] (imputed)	N
1203	chr17	81109536	81109537	rs9908212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q25.3		rs9908212-C	0.701	5E-25				Affymetrix [10369434] (imputed)	N
585	chr17_ctg5_hap1	7343	7344	rs7216796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs7216796-?	NR	3E-9				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	7343	7344	rs7216796	26498133	Arya R	2015-08-26	Genet Epidemiol	Genetic Variants Influencing Joint Damage in Mexican Americans and European Americans With Rheumatoid Arthritis.	Joint damage in rheumatoid arthritis	666 Mexican ancestry cases, 407 European ancestry cases	NA	17q21.31	MAP3K14	rs7216796-A	0.3619	6E-6	(Mexican)	0.2459	[0.14-0.35] unit decrease	Illumina [at least 127563] (imputed)	N
585	chr17_ctg5_hap1	10313	10314	rs4792849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs4792849-G	0.704679	9E-23				Affymetrix, Illumina [23467995] (imputed)	N
585	chr17_ctg5_hap1	10313	10314	rs4792849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	17q21.31	NR	rs4792849-G	0.741768	7E-24		0.021646	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
585	chr17_ctg5_hap1	14193	14194	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	9E-23				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	14193	14194	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	7E-21				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	14193	14194	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	5E-14				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	14193	14194	rs117642368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs117642368-?	NR	1E-30				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	14193	14194	rs117642368	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	17q21.31	SPATA32	rs117642368-C	0.1073	3E-8		0.002	[0.001-0.003] unit decrease	Affymetrix [15275733] (imputed)	N
585	chr17_ctg5_hap1	18140	18141	rs4792814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	17q21.31	RNA5SP443	rs4792814-C	0.618351	6E-10		0.014148688	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
585	chr17_ctg5_hap1	18140	18141	rs4792814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	17q21.31		rs4792814-?	NR	1E-7				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	18140	18141	rs4792814	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and LDL levels (pleiotropy)	215,725 individuals	NA	17q21.31	MAP3K14	rs4792814-?	NR	5E-6			[0.8694-0.9496]	NR [2491989]	N
585	chr17_ctg5_hap1	18140	18141	rs4792814	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	17q21.31	MAP3K14	rs4792814-G	NR	3E-6		1.08	[1.06-1.09]	Illumina [465434]	N
585	chr17_ctg5_hap1	22805	22806	rs7222450	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	17q21.31	MAP3K14	rs7222450-A	NR	2E-10		1.0617	NR	Affymetrix, Illumina [8278136] (imputed)	N
585	chr17_ctg5_hap1	32408	32409	rs17686238	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	MAP3K14	rs17686238-T	0.1071	8E-27		0.1896	[0.15-0.22] unit decrease	NR [7784415] (imputed)	N
585	chr17_ctg5_hap1	32408	32409	rs17686238	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs17686238-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
585	chr17_ctg5_hap1	36855	36856	rs72832896	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs72832896-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
585	chr17_ctg5_hap1	45831	45832	rs7214661	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	17q21.31	MAP3K14, ARHGAP27	rs7214661-G	0.32	1E-8		1.032	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
585	chr17_ctg5_hap1	68200	68201	rs35771499	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs35771499-C	0.02962	9E-9	(TOMM70)	0.0161	NR unit increase	Illumina [1671387] (imputed)	N
585	chr17_ctg5_hap1	71375	71376	rs10468514	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs10468514-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
585	chr17_ctg5_hap1	71375	71376	rs10468514	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	17q21.31	NR	rs10468514-G	0.3984	1E-10		1.04	[1.028-1.052]	Affymetrix [15688218] (imputed)	N
585	chr17_ctg5_hap1	71375	71376	rs10468514	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	17q21.31	NR	rs10468514-G	0.3984	6E-11		1.037	[1.026-1.047]	Affymetrix [15688218] (imputed)	N
585	chr17_ctg5_hap1	71375	71376	rs10468514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	17q21.31		rs10468514-?	NR	4E-15				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	71477	71478	rs9303471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs9303471-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	17q21.31		rs9895436-A	0.4122	1E-9		1.07		Affymetrix, Illumina [9397031] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CTB-39G8.2	rs9895436-A	NR	6E-9		0.0168186	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	CTB-39G8.2	rs9895436-A	NR	1E-8		0.0165763	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	17q21.31	MAP3K14, ARHGAP27	rs9895436-A	0.398	7E-10		1.064	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	17q21.31	MAP3K14, ARHGAP27	rs9895436-?	NR	6E-20		1.07	[1.06-1.08]	Affymetrix [9000000] (imputed)	N
585	chr17_ctg5_hap1	73021	73022	rs9895436	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	17q21.31	MAP3K14, ARHGAP27	rs9895436-A	NR	6E-7		1.035	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	1E-9		0.0241895	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	2E-9		0.0240172	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	ARHGAP27	rs62064595-G	NR	2E-9		0.0239697	[0.016-0.032] unit increase	Affymetrix [321169] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs62064595-?	NR	4E-45				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.31		rs62064595-?	NR	6E-9				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	75509	75510	rs62064595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs62064595-A	NR	7E-13		7.185	z score decrease	Affymetrix [10847151] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs61572747-?		6E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs61572747-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ARHGAP27	rs61572747-A	NR	1E-10		0.011082	[0.0077-0.0145] unit increase	Affymetrix [18485882] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs61572747-A	NR	5E-14		7.528	z score decrease	Affymetrix [10847151] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs61572747-?	NR	4E-11		0.01768	[0.012-0.023] unit increase	Affymetrix [10847151] (imputed)	N
585	chr17_ctg5_hap1	76026	76027	rs61572747	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	ARHGAP27	rs61572747-A	NR	1E-8		5.727	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
585	chr17_ctg5_hap1	86624	86625	rs4763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs4763-?		9E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
585	chr17_ctg5_hap1	86624	86625	rs4763	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs4763-A	0.1745	2E-8	(EA)	0.0464	[0.03-0.063] unit decrease	Illumina [~ 11800000] (imputed)	N
585	chr17_ctg5_hap1	89803	89804	rs62064598	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000267344	rs62064598-C	NR	3E-15		0.013541	[0.01-0.017] unit increase	Affymetrix [18485882] (imputed)	N
585	chr17_ctg5_hap1	91741	91742	rs1230097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs1230097-?	NR	1E-10				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	103103	103104	rs1230106	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1230106-A	NR	5E-11		6.57	z score decrease	Affymetrix [10847151] (imputed)	N
585	chr17_ctg5_hap1	103927	103928	rs62064641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs62064641-?	NR	1E-13				NR [~ 8900000] (imputed)	N
585	chr17_ctg5_hap1	103927	103928	rs62064641	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs62064641-C	NR	2E-11		0.02055	[0.015-0.027] unit increase	Affymetrix [10847151] (imputed)	N
585	chr17_ctg5_hap1	104297	104297	rs111443054	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs111443054-?	NR	6E-26		0.0275831	[0.022-0.033] unit increase	Affymetrix [20259828] (imputed)	N
585	chr17_ctg5_hap1	108534	108534	rs369762169	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs369762169-?		4E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
585	chr17_ctg5_hap1	110559	110560	rs12936645	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	17q21.31	NR	rs12936645-T		5E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
585	chr17_ctg5_hap1	114451	114452	rs35519908	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs35519908-?		3E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
585	chr17_ctg5_hap1	122421	122422	rs12949256	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	ARHGAP27	rs12949256-T		3E-51		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
585	chr17_ctg5_hap1	126496	126497	rs34465449	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs34465449-?	NR	1E-12				NR [NR]	N
585	chr17_ctg5_hap1	127379	127380	rs56168933	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	ARHGAP27	rs56168933-?	NR	8E-28		2.0304	[1.67-2.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
585	chr17_ctg5_hap1	128502	128503	rs11012	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	17q21.31	MAPT, PLEKHM1, IMP5	rs11012-T	NR	6E-8		1.43	[1.27-1.61]	Illumina [495715] (imputed)	N
585	chr17_ctg5_hap1	130988	130989	rs35354512	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs35354512-?	NR	5E-12				NR [NR]	N
585	chr17_ctg5_hap1	130988	130989	rs35354512	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs35354512-?	NR	1E-12				NR [NR]	N
586	chr17_ctg5_hap1	131463	131464	rs17631303	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	intergenic	rs17631303-G	0.19	1E-8		1.27	[1.17-1.38]	Illumina [2568349] (imputed)	N
586	chr17_ctg5_hap1	131463	131464	rs17631303	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	17q21.31	NR	rs17631303-?	NR	1E-8				Illumina [2568349] (imputed)	N
586	chr17_ctg5_hap1	135736	135737	rs35329349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	17q21.31		rs35329349-C	NR	1E-10		0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
586	chr17_ctg5_hap1	151016	151017	rs4588023	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs4588023-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
586	chr17_ctg5_hap1	153161	153162	rs147030255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	17q21.31	AC091132.1, PLEKHM1	rs147030255-A	0.9918	7E-6		0.2514	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
586	chr17_ctg5_hap1	158140	158140	rs200291097	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs200291097-?	0.174	5E-14	(total)	1003.1962	[742.31-1264.08] unit decrease	Affymetrix, Illumina [NR]	N
586	chr17_ctg5_hap1	164672	164673	rs149366495	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	17q21.31	PLEKHM1	rs149366495-?		8E-13	(Global)			Affymetrix, Illumina [NR] (imputed)	N
586	chr17_ctg5_hap1	165650	165651	rs151184436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs151184436-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
586	chr17_ctg5_hap1	170314	170315	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	1E-10				NR [NR]	N
586	chr17_ctg5_hap1	170314	170315	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	4E-8				NR [NR]	N
586	chr17_ctg5_hap1	170314	170315	rs56192752	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	17q21.31		rs56192752-?	NR	7E-14				NR [NR]	N
586	chr17_ctg5_hap1	170314	170315	rs56192752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs56192752-A	0.8218	9E-31	(conditional-joint)	0.0218	[0.018-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
586	chr17_ctg5_hap1	178371	178372	rs112275793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	17q21.31		rs112275793-C	NR	2E-19		0.0277	[0.022-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
586	chr17_ctg5_hap1	178673	178674	rs142925250	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	17q21.31		rs142925250-A	0.799673	4E-8		0.028998	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
586	chr17_ctg5_hap1	180757	180758	rs10432034	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs10432034-?		4E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
586	chr17_ctg5_hap1	182404	182405	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	3E-12		1.1472089	[1.10406141518038-1.19204274035159]	Illumina [11595112] (imputed)	N
586	chr17_ctg5_hap1	182404	182405	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA1 mutation carriers	2,933 European ancestry carrier cases, 16,103 European ancestry carrier controls	NA	17q21.31	NR	rs1879586-G	0.181254	7E-6		1.1804551	[1.0983093028467-1.26874471717965]	Illumina [11595112] (imputed)	N
586	chr17_ctg5_hap1	182404	182405	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	2E-13		1.1339011	[1.09660984313914-1.1724605092959]	Illumina [11595112] (imputed)	N
586	chr17_ctg5_hap1	182404	182405	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	3E-13		1.1585579	[1.11378456264581-1.20513099189349]	Illumina [11595112] (imputed)	N
586	chr17_ctg5_hap1	182404	182405	rs1879586	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	17q21.31	NR	rs1879586-G	0.181254	2E-19		1.1611373	[1.12396655984348-1.19953742102822]	Illumina [11595112] (imputed)	N
586	chr17_ctg5_hap1	184314	184315	rs113322852	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs113322852-T	0.198807	2E-12		0.055314276	[0.04-0.071] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
586	chr17_ctg5_hap1	184314	184315	rs113322852	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q21.31	NR	rs113322852-A	0.190284825959502	3E-19		0.021021854	[0.016-0.026] unit increase	NR [NR]	N
586	chr17_ctg5_hap1	188488	188489	rs62065453	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.31	PLEKHM1	rs62065453-C	0.774564	2E-17		0.00232221	[0.0018-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
586	chr17_ctg5_hap1	188488	188489	rs62065453	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs62065453-T	0.217174	3E-12		6.99	z score increase	NR [~ 10847151] (imputed)	N
586	chr17_ctg5_hap1	188488	188489	rs62065453	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs62065453-T	0.217174	6E-15		7.81	z score increase	NR [10847151] (imputed)	N
586	chr17_ctg5_hap1	188488	188489	rs62065453	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs62065453-T	0.21717	2E-24		10.227	z score increase	Illumina [18485882] (imputed)	N
586	chr17_ctg5_hap1	196852	196853	rs1056009	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000131484, LRRC37A4P	rs1056009-T	NR	2E-11		0.011579	[0.0082-0.015] unit decrease	Affymetrix [18485882] (imputed)	N
587	chr17_ctg5_hap1	308973	308974	rs155779	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A, LRRC37A2, NSF	rs155779-A		1E-11		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
587	chr17_ctg5_hap1	315478	315479	rs199491	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs199491-T	0.23781	6E-21		9.391	z score increase	Illumina [18485882] (imputed)	N
588	chr17_ctg5_hap1	420541	420542	rs273535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	17q21.31		rs273535-T	0.31118	1E-8		0.0140472	[0.0092-0.0189] unit decrease	Illumina [13479295] (imputed)	N
588	chr17_ctg5_hap1	422780	422781	rs1863114	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A	rs1863114-C		2E-50		0.045	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
588	chr17_ctg5_hap1	442174	442175	rs62073233	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	17q21.31		rs62073233-G	0.78721	2E-9		0.0339922	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
588	chr17_ctg5_hap1	443413	443414	rs62073229	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 197)	19,670 European ancestry individuals	NA	17q21.31		rs62073229-?	NR	1E-13				NR [9705931] (imputed)	N
588	chr17_ctg5_hap1	485428	485429	rs62064364	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62064364-?		5E-10	(External capsule )			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	485428	485429	rs62064364	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q21.31	LRRC37A4P, MAPK8IP1P2	rs62064364-?	NR	4E-35		0.978	[0.81-1.14] unit decrease	Affymetrix [11100000] (imputed)	N
588	chr17_ctg5_hap1	487137	487138	rs1724438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs1724438-A	0.198341	4E-41				Affymetrix, Illumina [19872809] (imputed)	N
588	chr17_ctg5_hap1	487137	487138	rs1724438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	17q21.31	NR	rs1724438-A	0.206005	6E-44		0.035496	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
588	chr17_ctg5_hap1	488218	488219	rs79742625	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	17q21.31		rs79742625-T	0.19286199999999998	3E-18		1.060499	[1.04-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
588	chr17_ctg5_hap1	488401	488402	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	4E-7		0.0048	[0.003-0.0066] unit increase	Affymetrix [~ 9500000] (imputed)	N
588	chr17_ctg5_hap1	488401	488402	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	2E-6		0.7099	[0.42-1] unit increase	Affymetrix [~ 9500000] (imputed)	N
588	chr17_ctg5_hap1	488401	488402	rs2668674	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	17q21.31	ARL17A	rs2668674-G	0.1991	2E-11		0.0418	[0.03-0.054] unit increase	Affymetrix [~ 9500000] (imputed)	N
588	chr17_ctg5_hap1	490916	490917	rs2668680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	17q21.31	NR	rs2668680-C	0.177	4E-19		0.0174888	[0.014-0.021] unit decrease	NR [~ 9732723] (imputed)	N
588	chr17_ctg5_hap1	492972	492973	rs1724429	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	17q21.31	NR	rs1724429-G	0.2	7E-16		0.024308164	[0.018-0.03] unit decrease	Affymetrix [10613246] (imputed)	N
588	chr17_ctg5_hap1	496543	496544	rs7209589	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	17q21.31		rs7209589-?	NR	9E-24				NR [7857346] (imputed)	N
588	chr17_ctg5_hap1	497343	497344	rs78625142	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	17q21.31	NR	rs78625142-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
588	chr17_ctg5_hap1	497762	497763	rs2957297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs2957297-?	NR	2E-7		5.231	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
588	chr17_ctg5_hap1	500454	500454	rs572756998	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17q21.31	WNT3, MAPT, PLEKHM1	rs572756998-A	NR	3E-16		0.310199	[0.24-0.38] unit decrease	Affymetrix [27512692] (imputed)	N
588	chr17_ctg5_hap1	501326	501327	rs2696497	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs2696497-T	0.21384	2E-15		7.92	z score increase	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	501766	501767	rs2732614	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	KIAA1267, LRRC37	rs2732614-T	0.2	8E-6		0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
588	chr17_ctg5_hap1	501766	501767	rs2732614	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	17q21.31	KIAA1267, LRRC37	rs2732614-T	0.2	7E-6	(Ajusted for ApoE)	0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
588	chr17_ctg5_hap1	502045	502046	rs2696500	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs2696500-T	0.214048	4E-29		11.21	z score increase	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	506188	506189	rs184837332	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	17q21.31		rs184837332-G	0.775	9E-14		0.1	[0.07-0.13] % increase	Affymetrix [NR] (imputed)	N
588	chr17_ctg5_hap1	507482	507484	rs201936061	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	ARL17A	rs201936061-T	0.0518	2E-12		0.6693	[0.48-0.85] mmHg increase	Affymetrix [NR] (imputed)	N
588	chr17_ctg5_hap1	507482	507484	rs201936061	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	17q21.31	ARL17A	rs201936061-T	0.0523	9E-16		0.566	[0.43-0.7] mmHg increase	Affymetrix [NR] (imputed)	N
588	chr17_ctg5_hap1	508622	508623	rs17665188	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs17665188-T	0.213949	1E-18		8.79	z score decrease	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	509178	509179	rs2696524	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696524-?		5E-11	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	510360	510361	rs2696532	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs2696532-A	0.212157	4E-8		5.49	z score decrease	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	511067	511068	rs2732699	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs2732699-C	0.8401	1E-10	(EA)	0.0595	[0.041-0.078] unit increase	Illumina [~ 11800000] (imputed)	N
588	chr17_ctg5_hap1	511422	511423	rs2261201	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs2261201-C	0.214631	5E-12		6.91	z score decrease	NR [~ 10847151] (imputed)	N
588	chr17_ctg5_hap1	512751	512752	rs2732703	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q21.31		rs2732703-?	NR	3E-6		0.873		NR [98334]	N
588	chr17_ctg5_hap1	512751	512752	rs2732703	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	17q21.31	MAPT	rs2732703-?	NR	1E-7		1.1627907	[1.23-1.1]	Affymetrix [up to 7055881] (imputed)	N
588	chr17_ctg5_hap1	512751	512752	rs2732703	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q21.31	KANSL1, LRRC27A, MAPT	rs2732703-T	0.87	6E-9		1.369863	[1.23-1.54]	NR [NR]	N
588	chr17_ctg5_hap1	514283	514284	rs2732706	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	17q21.31		rs2732706-T	0.221	4E-12		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
588	chr17_ctg5_hap1	514582	514583	rs2732708	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	NR	rs2732708-T	0.214039	3E-11		6.64	z score increase	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	514582	514583	rs2732708	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2732708-T	0.21404	2E-23		9.955	z score increase	Illumina [18485882] (imputed)	N
588	chr17_ctg5_hap1	517339	517340	rs112665297	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs112665297-?		1E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	518754	518755	rs2696557	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs2696557-A	0.214201	3E-15		7.91	z score increase	NR [10847151] (imputed)	N
588	chr17_ctg5_hap1	519565	519566	rs2732655	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732655-?		1E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	521003	521004	rs2732650	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	17q21.31	RP11-259G18.1	rs2732650-?	NR	3E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
588	chr17_ctg5_hap1	522089	522090	rs2532345	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	17q21.31	NR	rs2532345-A	0.293	5E-12		0.0122867	[0.0088-0.0158] unit decrease	NR [9732723] (imputed)	N
588	chr17_ctg5_hap1	522089	522090	rs2532345	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ENSG00000261575	rs2532345-?	NR	3E-15		0.013842	[0.01-0.017] unit decrease	Affymetrix [805426] (imputed)	N
588	chr17_ctg5_hap1	522621	522622	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		2E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	522621	522622	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		6E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	522621	522622	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		3E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	522621	522622	rs2696694	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2696694-?		6E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	522987	522988	rs2950706	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	17q21.31	CRHR1, MAPT, WNT3	rs2950706-?	NR	7E-20		0.013745	[0.011-0.017] unit decrease	Affymetrix [NR] (imputed)	N
588	chr17_ctg5_hap1	523565	523566	rs4988900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	RP11-259G18.3, RP11-259G18.1	rs4988900-A	0.43436	3E-17		0.022074057	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
588	chr17_ctg5_hap1	523565	523566	rs4988900	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ENSG00000261575	rs4988900-?	NR	3E-9		0.010394	[0.007-0.0138] unit increase	Affymetrix [805426] (imputed)	N
588	chr17_ctg5_hap1	523820	523821	rs2732677	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732677-?		5E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
588	chr17_ctg5_hap1	523820	523821	rs2732677	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2732677-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	526469	526470	rs2532349	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	17q21.31	KANSL1	rs2532349-G	0.242	2E-10		1.22	[1.15-1.29]	Affymetrix [28509962] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		7E-11	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		9E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		4E-11	(Genu of corpus callosum)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		3E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		2E-10	(Anterior corona radiata)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Cingulate gyrus)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		1E-10	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		5E-11	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	527158	527159	rs34081316	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34081316-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	528181	528182	rs35031964	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000262539	rs35031964-A	NR	2E-13		0.012707	[0.0093-0.0161] unit increase	Affymetrix [18485882] (imputed)	N
589	chr17_ctg5_hap1	530056	530057	rs2532353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	17q21.31	NR	rs2532353-G	0.550104	3E-19		0.050724	[0.04-0.062] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
589	chr17_ctg5_hap1	530288	530289	rs147431626	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs147431626-?		4E-13	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
589	chr17_ctg5_hap1	530355	530356	rs139077859	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	17q21.31		rs139077859-G	0.79	2E-8		0.033	[0.021-0.045] unit decrease	Affymetrix [8918919] (imputed)	N
589	chr17_ctg5_hap1	531223	531224	rs2458179	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	17q21.31	intergenic	rs2458179-?	NR	7E-6	(SF9)			Affymetrix [5476100] (imputed)	N
589	chr17_ctg5_hap1	532971	532972	rs12953096	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs12953096-?	NR	7E-10	(right fusiform)			NR [9227495] (imputed)	N
589	chr17_ctg5_hap1	533137	533138	rs71375338	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.31		rs71375338-G	0.73	3E-16				Affymetrix [10369434] (imputed)	N
589	chr17_ctg5_hap1	533137	533138	rs71375338	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs71375338-A	0.268548	3E-20		0.023166748	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
589	chr17_ctg5_hap1	533137	533138	rs71375338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs71375338-A	0.259541	3E-22				Affymetrix, Illumina [23114412] (imputed)	N
589	chr17_ctg5_hap1	533580	533581	rs2950015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs2950015-G	0.227758	6E-48		0.040000007	[0.035-0.045] unit increase	Affymetrix [93095623] (imputed)	N
589	chr17_ctg5_hap1	533580	533581	rs2950015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	17q21.31	RP11-259G18.3	rs2950015-G	0.227742	2E-55		0.041690093	[0.036-0.047] unit increase	Affymetrix [93095623] (imputed)	N
589	chr17_ctg5_hap1	534722	534723	rs2957316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulmonary fibrosis	1,566 European ancestry cases, 467,560 European ancestry controls, 126 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	17q21.31		rs2957316-C	NR	5E-8		0.2809	[0.18-0.38] unit decrease	Affymetrix, Illumina [25843031] (imputed)	N
589	chr17_ctg5_hap1	534722	534723	rs2957316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Interstitial lung disease	2,267 European ancestry cases, 467,560 European ancestry controls, 1,046 East Asian ancestry cases, 176,974 East Asian ancestry controls	NA	17q21.31		rs2957316-C	NR	3E-9		0.2644	[0.18-0.35] unit decrease	Affymetrix, Illumina [25843170] (imputed)	N
589	chr17_ctg5_hap1	540015	540016	rs2696625	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	17q21.31		rs2696625-A	0.77	5E-12		0.31	[0.22-0.4] unit decrease	Affymetrix [8918919] (imputed)	N
589	chr17_ctg5_hap1	540015	540016	rs2696625	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	17q21.31	KANSL1-AS1	rs2696625-A	0.77	3E-12		0.037	[0.027-0.047] SD units decrease	NR [9926106] (imputed)	N
589	chr17_ctg5_hap1	543837	543838	rs2732716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	17q21.31	RP11-259G18.2	rs2732716-C	0.6328	9E-10		0.02356132	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
589	chr17_ctg5_hap1	543923	543924	rs2668637	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	ENSG00000262500	rs2668637-A	NR	2E-10		0.010891	[0.0075-0.0143] unit increase	Affymetrix [18485882] (imputed)	N
589	chr17_ctg5_hap1	548732	548733	rs2696668	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs2696668-A	0.215905	1E-26		10.68	z score decrease	NR [10847151] (imputed)	N
589	chr17_ctg5_hap1	552437	552438	rs2532386	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	KANSL1, LRRC37A	rs2532386-?	NR	4E-8				NR [~ 24000000] (imputed)	N
589	chr17_ctg5_hap1	552672	552673	rs2532387	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q21.31		rs2532387-G	0.781	1E-19				Affymetrix [10369434] (imputed)	N
589	chr17_ctg5_hap1	555087	555088	rs2532389	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs2532389-G	NR	1E-9		1.074	[1.05-1.099]	Affymetrix [7846216] (imputed)	N
589	chr17_ctg5_hap1	555262	555263	rs12452789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	17q21.31	NR	rs12452789-T	0.524918	1E-13		0.036852	[0.027-0.047] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
589	chr17_ctg5_hap1	562108	562109	rs2532402	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration)	88,411 European ancestry individuals	NA	17q21.31		rs2532402-G	0.221	2E-12		0.04	unit increase	Affymetrix [8951705] (imputed)	N
589	chr17_ctg5_hap1	562108	562109	rs2532402	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Moderate to vigorous physical activity duration	88,411 European ancestry individuals	NA	17q21.31		rs2532402-G	0.221	2E-10		0.035	unit increase	Affymetrix [8951705] (imputed)	N
589	chr17_ctg5_hap1	577016	577017	rs2732631	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	17q21.31	KANSL1	rs2732631-?	NR	3E-35		0.959	[0.8-1.12] unit decrease	Affymetrix [11100000] (imputed)	N
589	chr17_ctg5_hap1	578879	578880	rs2668690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	17q21.31		rs2668690-G	0.808461	3E-8		0.028132	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
589	chr17_ctg5_hap1	578879	578880	rs2668690	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	17q21.31		rs2668690-G	0.808457	1E-10		0.0343133	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
589	chr17_ctg5_hap1	580476	580477	rs2696461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs2696461-C	NR	4E-10		0.0181891	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
589	chr17_ctg5_hap1	582251	582252	rs2696457	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs2696457-T	0.215657	6E-10		6.186	unit increase	NR [10847151] (imputed)	N
589	chr17_ctg5_hap1	582737	582738	rs2696455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	17q21.31		rs2696455-C	0.804129	4E-8		0.0266681	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
589	chr17_ctg5_hap1	592671	592672	rs62060954	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	17q21.31		rs62060954-T	0.839881	5E-10		0.036063	[0.025-0.047] unit increase	NR [11722792] (imputed)	N
589	chr17_ctg5_hap1	596794	596795	rs2732596	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	KANSL1	rs2732596-T	NR	5E-11		0.013165	[0.0092-0.0171] unit decrease	Affymetrix [18485882] (imputed)	N
589	chr17_ctg5_hap1	603834	603835	rs8064802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	17q21.31		rs8064802-C	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
589	chr17_ctg5_hap1	610027	610028	rs2532253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	KANSL1	rs2532253-A	0.196735	2E-18		0.032460287	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
589	chr17_ctg5_hap1	613876	613877	rs2532263	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs2532263-G	NR	4E-20		0.015798	[0.012-0.019] unit increase	Affymetrix [18485882] (imputed)	N
589	chr17_ctg5_hap1	613876	613877	rs2532263	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	KANSL1	rs2532263-G	0.81	7E-13	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
589	chr17_ctg5_hap1	617505	617506	rs35643216	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	KANSL1	rs35643216-C		2E-56		0.046	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
589	chr17_ctg5_hap1	617573	617574	rs1881193	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs1881193-T	0.21737	1E-18		8.84	z score decrease	NR [10847151] (imputed)	N
589	chr17_ctg5_hap1	620575	620576	rs2696658	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	KIF18B, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, ARHGAP27, PLEKHM1, CRHR1, SPPL2C, MAPT, STH, KANSL1, ARL17B, LRRC37A, LRRC37A2, ARL17A, NSF, WNT3	rs2696658-?		2E-65				NR [7428630] (imputed)	N
589	chr17_ctg5_hap1	622473	622474	rs62060891	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	17q21.31	NR	rs62060891-C	0.2215	1E-17				NR [9056863] (imputed)	N
589	chr17_ctg5_hap1	638954	638955	rs2696579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	17q21.31	KANSL1	rs2696579-A	0.3375	2E-9		0.02406112	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr17_ctg5_hap1	638954	638955	rs2696579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	17q21.31	KANSL1	rs2696579-A	0.3371	5E-10		0.02511521	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
589	chr17_ctg5_hap1	643984	643984	rs143437112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	17q21.31	KANSL1	rs143437112-TA	0.405392	2E-10		0.016003625	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
589	chr17_ctg5_hap1	644010	644011	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	2E-11		0.00690241	[0.0049-0.0089] years increase	NR [7400000] (imputed)	N
589	chr17_ctg5_hap1	644010	644011	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	2E-30		0.0164537	[0.014-0.019] years increase	NR [7400000] (imputed)	N
589	chr17_ctg5_hap1	644010	644011	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	17q21.31		rs2222746-T	NR	4E-6		0.00525027	[0.003-0.0075] years decrease	NR [7400000] (imputed)	N
589	chr17_ctg5_hap1	644010	644011	rs2222746	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	17q21.31		rs2222746-T	NR	9E-28		0.047721766	[0.039-0.056] years increase	NR [7400000] (imputed)	N
589	chr17_ctg5_hap1	644193	644194	rs2696589	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2696589-T	0.19528	3E-25		10.371	z score increase	Illumina [18485882] (imputed)	N
589	chr17_ctg5_hap1	651157	651158	rs2077551	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	17q21.31	MAPT	rs2077551-T	0.814	3E-16		1.4084507	[1.3-1.54]	Affymetrix, Illumina [10790934] (imputed)	N
589	chr17_ctg5_hap1	653125	653126	rs34258265	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	KANSL1	rs34258265-A	0.548498	5E-13		0.020897444	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	658131	658132	rs79301522	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs79301522-A	0.217029	1E-30		11.51	z score decrease	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	659424	659425	rs4792831	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	FOXO3	rs4792831-?		4E-20				NR [7428630] (imputed)	N
590	chr17_ctg5_hap1	660400	660401	rs4471723	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs4471723-T	0.219254	5E-9		5.84	z score increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	661487	661488	rs78746179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	17q21.31		rs78746179-?	NR	4E-10				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	661487	661488	rs78746179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs78746179-?	NR	9E-17				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	673094	673095	rs17661015	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs17661015-T	0.215131	4E-12		6.93	z score decrease	NR [~ 10847151] (imputed)	N
590	chr17_ctg5_hap1	673094	673095	rs17661015	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs17661015-T	0.215131	3E-28		11.02	z score decrease	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	673128	673129	rs17577369	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	NR	rs17577369-A	0.2157	4E-12		6.96	z score decrease	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	673433	673434	rs4606752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	17q21.31	KANSL1	rs4606752-G	0.2266	1E-17		0.03608263	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr17_ctg5_hap1	673433	673434	rs4606752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	17q21.31	KANSL1	rs4606752-G	0.2267	2E-16		0.03470527	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr17_ctg5_hap1	673462	673463	rs35524223	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q21.31	KANSL1	rs35524223-A	0.2166	7E-13		0.059	[0.043-0.075] unit decrease	Affymetrix [27624732] (imputed)	N
590	chr17_ctg5_hap1	673462	673463	rs35524223	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	17q21.31	KANSL1	rs35524223-A	0.22	1E-13		0.061	[0.045-0.077] unit decrease	Affymetrix [up to 27624732] (imputed)	N
590	chr17_ctg5_hap1	673484	673485	rs4630591	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	ACBD4	rs4630591-T	0.198844	1E-17		8.54	z score increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	676159	676160	rs78929339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	17q21.31		rs78929339-G	NR	9E-13		0.0559	[0.041-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
590	chr17_ctg5_hap1	676211	676212	rs76640332	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	17q21.31	KANSL1	rs76640332-A	0.222	5E-13		0.03067547	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs7225002-G	NR	5E-8		0.0156309	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	17q21.31	KANSL1	rs7225002-G	0.41453	1E-21		0.027102236	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	17q21.31	KANSL1	rs7225002-G	0.41472	3E-24		0.022808008	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	KANSL1	rs7225002-A	0.6094	2E-40		0.1351	[0.12-0.15] unit increase	NR [7784415] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs7225002-?		5E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs7225002-A	NR	3E-8		0.0096215	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	17q21.31	KANSL1	rs7225002-G	0.4084	5E-8		1.0180612		Affymetrix [11880941] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	17q21.31		rs7225002-?	NR	7E-78				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	17q21.31		rs7225002-?	NR	3E-30				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs7225002-A	NR	6E-9		5.823	z score decrease	Affymetrix [10847151] (imputed)	N
590	chr17_ctg5_hap1	677000	677001	rs7225002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs7225002-?	NR	3E-9		0.01401	[0.0094-0.0186] unit increase	Affymetrix [10847151] (imputed)	N
590	chr17_ctg5_hap1	678577	678578	rs17577094	24842889	Vacic V	2014-05-19	Hum Mol Genet	Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.	Parkinson's disease	1,130 Ashkenazi Jewish cases, 2,611 Ashkenazi Jewish controls	306 Ashkenazi Jewish cases, 2,583 Ashkenazi Jewish controls	17q21.31	MAPT	rs17577094-?	0.74	8E-9		1.56	[1.39-1.79]	Affymetrix, Illumina [1069161] (imputed)	N
590	chr17_ctg5_hap1	678812	678813	rs9303525	22504418	Ikram MA	2012-04-15	Nat Genet	Common variants at 6q22 and 17q21 are associated with intracranial volume.	Intracranial volume	8,175 European ancestry individuals	1,752 European ancestry individuals	17q21.31	MAPT, GRN, CRHR1, STH	rs9303525-G	0.22	8E-15		14.9	[NR] ml decrease	Affymetrix, Illumina [2229753] (imputed)	N
590	chr17_ctg5_hap1	679117	679118	rs9904766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	KANSL1	rs9904766-T	NR	2E-9		0.019001	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
590	chr17_ctg5_hap1	679117	679118	rs9904766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	KANSL1	rs9904766-T	NR	1E-9		0.0192377	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
590	chr17_ctg5_hap1	679591	679592	rs117754181	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	KANSL1	rs117754181-?	NR	2E-9		0.010104	[0.0068-0.0134] unit decrease	Affymetrix [805426] (imputed)	N
590	chr17_ctg5_hap1	680006	680007	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	5E-18		0.041183	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
590	chr17_ctg5_hap1	680006	680007	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	4E-16		0.038921	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
590	chr17_ctg5_hap1	680006	680007	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	4E-13		0.0345078	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
590	chr17_ctg5_hap1	680006	680007	rs16940904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	17q21.31		rs16940904-C	0.773434	1E-16		0.0389871	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
590	chr17_ctg5_hap1	682678	682679	rs111676341	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs111676341-A	0.240557	2E-11		0.049241845	[0.035-0.064] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
590	chr17_ctg5_hap1	682765	682766	rs371996525	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	17q21.31		rs371996525-?	NR	4E-48				NR [9705931] (imputed)	N
590	chr17_ctg5_hap1	682769	682770	rs376991420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	17q21.31	KANSL1	rs376991420-A	0.625614	9E-11		0.016512228	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	686953	686954	rs113564729	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	17q21.31	KANSL1	rs113564729-A		2E-11		0.0994	[0.07-0.129] unit increase	Illumina [NR]	N
590	chr17_ctg5_hap1	692948	692949	rs60521849	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	17q21.31	NR	rs60521849-A	0.3986	5E-12		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
590	chr17_ctg5_hap1	698412	698413	rs10775404	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	KANSL1	rs10775404-?	NR	3E-21		0.01638	[0.013-0.02] unit decrease	Affymetrix [805426] (imputed)	N
590	chr17_ctg5_hap1	699704	699706	rs201408539	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	17q21.31	KANSL1	rs201408539-?	NR	8E-20		1.338	[1.257-1.425]	Illumina [13436641] (imputed)	N
590	chr17_ctg5_hap1	701462	701463	rs55692232	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	17q21.31	NR	rs55692232-A	0.205	7E-21		0.020043388	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
590	chr17_ctg5_hap1	703184	703185	rs8080583	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	17q21.31	KANSL1	rs8080583-?	NR	1E-8		5.717	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
590	chr17_ctg5_hap1	704269	704270	rs80028338	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs80028338-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
590	chr17_ctg5_hap1	707628	707630	rs372176508	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs372176508-C	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr17_ctg5_hap1	717908	717909	rs974295	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	KANSL1	rs974295-T	NR	3E-11		0.013331	[0.0094-0.0173] unit decrease	Affymetrix [18485882] (imputed)	N
590	chr17_ctg5_hap1	727922	727923	rs115110322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs115110322-C	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr17_ctg5_hap1	736896	736897	rs11654745	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	17q21.31	KANSL1	rs11654745-A	NR	5E-8		0.0227274	[0.014-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
590	chr17_ctg5_hap1	741192	741193	rs113434679	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	17q21.31	KANSL1, MAPT	rs113434679-A	0.22119	9E-13		0.311323	[0.23-0.4] unit decrease	Illumina [9911207] (imputed)	N
590	chr17_ctg5_hap1	741192	741193	rs113434679	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	KANSL1	rs113434679-C	NR	3E-21		0.016272	[0.013-0.02] unit increase	Affymetrix [18485882] (imputed)	N
590	chr17_ctg5_hap1	741284	741285	rs112333322	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs112333322-A	0.214965	4E-19		8.94	z score decrease	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	746372	746373	rs72836318	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	17q21.31	NR	rs72836318-C	0.246	7E-9	(Conditioned on chr17:44793283)	0.017122326	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
590	chr17_ctg5_hap1	751131	751132	rs16940845	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	17q21.31	KANSL1	rs16940845-C	0.605528	3E-21		0.00215716	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
590	chr17_ctg5_hap1	761190	761190	rs368385820	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	KANSL1	rs368385820-TA	NR	2E-8		0.0169386	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
590	chr17_ctg5_hap1	762252	762253	rs117379709	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs117379709-A	NR	5E-10		0.0634	[0.043-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
590	chr17_ctg5_hap1	765389	765390	rs113815715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	17q21.31	NR	rs113815715-T	0.01045	2E-8	(LMNA)	0.4379	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr17_ctg5_hap1	769008	769009	rs17652520	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	MAPT	rs17652520-A	NR	5E-12		0.013847	[0.0099-0.0178] unit decrease	Affymetrix [18485882] (imputed)	N
590	chr17_ctg5_hap1	769008	769009	rs17652520	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	17q21.31	MAPT	rs17652520-A	0.231386	8E-13		0.05570984	[0.04-0.071] unit increase	Affymetrix [7288503] (imputed)	N
590	chr17_ctg5_hap1	769008	769009	rs17652520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	17q21.31		rs17652520-?	NR	2E-27				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	769008	769009	rs17652520	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs17652520-A	0.2216	1E-25		10.472	z score increase	Illumina [18485882] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	17q21.31	MAPT	rs62062288-?	NR	2E-14		0.097	[0.072-0.122] unit increase	NR [7682250] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.2181	7E-22		0.01863	[0.015-0.022] unit increase	NR [8968716] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q21.31	KANSL1	rs62062288-A	0.2207	1E-29		0.035170935	[0.029-0.041] unit decrease	Affymetrix [~ 11515000] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	17q21.31	KANSL1	rs62062288-A	0.2196	1E-12		0.019352188	[0.014-0.025] unit decrease	Affymetrix [11514463] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	17q21.31	CRHR1, DND1P1, ENSG00000262372, ENSG00000262500, ENSG00000262881, KANSL1, MAPT, MAPT-AS1, NSF, PLEKHM1, SPPL2C, STH, RP11-105N13.4, WNT3	rs62062288-A	NR	5E-10		6.21	[NR] z score decrease	NR [16213998]	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	17q21.31	MAPT	rs62062288-A	NR	2E-9		0.008	[0.006-0.01] unit decrease	NR [16213998]	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	STH	rs62062288-A	0.211505	6E-32		11.77	z score increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	1E-9		6.079	unit increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	771419	771420	rs62062288	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	NR	rs62062288-A	0.211505	7E-10		6.17	z score increase	NR [10847151] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	17q21.31	MAPT	rs58879558-C	0.229934	2E-53		0.046372186	[0.04-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	17q21.31	MAPT	rs58879558-C	0.229817	5E-28		0.03697445	[0.03-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.250777	1E-130				Affymetrix, Illumina [24332387] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.232575	2E-128		0.053	[0.049-0.057] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.249796	6E-91				Affymetrix, Illumina [24653286] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58879558-C	0.250229	6E-94				Affymetrix, Illumina [24558453] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	17q21.31	NR	rs58879558-C	0.22989199999999999	2E-9		0.0225798	[0.016-0.03] unit increase	Affymetrix [16577424] (imputed)	N
590	chr17_ctg5_hap1	772505	772506	rs58879558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	17q21.31		rs58879558-?	NR	3E-98				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	776005	776006	rs62062271	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	17q21.31		rs62062271-C	NR	1E-93		0.0399	[0.036-0.044] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
590	chr17_ctg5_hap1	776005	776006	rs62062271	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	17q21.31	NR	rs62062271-T	0.77	5E-9		1.09	NR	NR [8853336] (imputed)	N
590	chr17_ctg5_hap1	776005	776006	rs62062271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.31	MAPT	rs62062271-C	0.228578	9E-66		0.04680153	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
590	chr17_ctg5_hap1	776005	776006	rs62062271	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	17q21.31	NR	rs62062271-C	0.22819699999999998	5E-18		0.0305695	[0.024-0.038] unit increase	Affymetrix [16577313] (imputed)	N
590	chr17_ctg5_hap1	776213	776214	rs66499584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	17q21.31		rs66499584-?	NR	2E-11				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	781488	781489	rs4792897	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs4792897-A	0.8262	3E-8		1.0416667	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
590	chr17_ctg5_hap1	783352	783353	rs56087321	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	17q21.31	NR	rs56087321-C	0.3908	1E-17		0.0172	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
590	chr17_ctg5_hap1	783732	783733	rs12946693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	17q21.31		rs12946693-C	NR	4E-16		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
590	chr17_ctg5_hap1	783732	783733	rs12946693	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	17q21.31	MAPT	rs12946693-T	0.45	5E-12		6.9	z-score increase	Affymetrix [4311822] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	17q21.31		rs8067056-C	NR	3E-8		0.0369	[0.024-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	17q21.31	MAPT	rs8067056-T	0.62	2E-12		7.06	z-score increase	Affymetrix [4314223] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs8067056-?	NR	6E-9	(total brain volume)			NR [9227495] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs8067056-T	NR	1E-12		0.012341	[0.0089-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs8067056-C	NR	4E-10		0.01542	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs8067056-T	NR	1E-20		9.322	z score decrease	Affymetrix [10847151] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs8067056-?	NR	1E-12		0.017	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
590	chr17_ctg5_hap1	783792	783793	rs8067056	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs8067056-T	NR	3E-8		5.557	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr17_ctg5_hap1	784338	784339	rs1991556	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	17q21.31	MAPT, STH	rs1991556-A	0.22	5E-23		0.012	[0.01-0.014] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
590	chr17_ctg5_hap1	784338	784339	rs1991556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	17q21.31		rs1991556-?	NR	1E-53				NR [~ 8900000] (imputed)	N
590	chr17_ctg5_hap1	784338	784339	rs1991556	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	17q21.31	STH	rs1991556-G	0.774711	3E-9		0.03280479	[0.022-0.044] SD units increase	NR [9926106] (imputed)	N
591	chr17_ctg5_hap1	786678	786679	rs8070723	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	17q21.31	NR	rs8070723-A	0.7848	4E-15		0.0162	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
591	chr17_ctg5_hap1	786678	786679	rs8070723	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	MAPT	rs8070723-?	0.23	2E-118		5.11	[4.43-5.91]	Illumina [531451]	N
591	chr17_ctg5_hap1	786678	786679	rs8070723	21044948	Spencer CC	2010-11-02	Hum Mol Genet	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls	17q21.31	MAPT	rs8070723-?	0.76	7E-12		1.3	[1.19-1.43]	Illumina [532616]	N
591	chr17_ctg5_hap1	787394	787395	rs2471739	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	17q21.31	STH	rs2471739-T	0.8059	3E-8		0.018065117	[0.012-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
591	chr17_ctg5_hap1	788766	788767	rs2435201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs2435201-T	NR	4E-8		0.0157709	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	788766	788767	rs2435201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs2435201-T	NR	3E-8		0.016056	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	788766	788767	rs2435201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs2435201-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
591	chr17_ctg5_hap1	788766	788767	rs2435201	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs2435201-A	NR	4E-12		6.944	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	789130	789131	rs117499775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	17q21.31		rs117499775-C	NR	4E-9		0.0337	[0.022-0.045] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
591	chr17_ctg5_hap1	789130	789131	rs117499775	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	17q21.31	MAPT	rs117499775-T	0.959835	6E-9		0.0282696	[0.019-0.038] unit increase	Affymetrix [NR] (imputed)	N
591	chr17_ctg5_hap1	789897	789898	rs56108300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	17q21.31	NR	rs56108300-A	0.224125	1E-24		0.023682	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
591	chr17_ctg5_hap1	791685	791686	rs2471738	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs2471738-?	NR	6E-9	(right fusiform)			NR [9227495] (imputed)	N
591	chr17_ctg5_hap1	791685	791686	rs2471738	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	17q21.31	NR	rs2471738-T	NR	5E-8		5.463	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
591	chr17_ctg5_hap1	791685	791686	rs2471738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs2471738-?	NR	6E-15		0.013463	[0.01-0.017] unit decrease	Affymetrix [805426] (imputed)	N
591	chr17_ctg5_hap1	791685	791686	rs2471738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs2471738-T	NR	2E-9		6.034	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	793162	793163	rs12051901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	MAPT	rs12051901-A	NR	7E-10		0.0219012	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
591	chr17_ctg5_hap1	793162	793163	rs12051901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	MAPT	rs12051901-A	NR	4E-10		0.0222448	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
591	chr17_ctg5_hap1	795897	795898	rs2435200	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs2435200-G	NR	3E-9		0.010362	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
591	chr17_ctg5_hap1	795897	795898	rs2435200	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs2435200-?	NR	6E-9		0.01363	[0.009-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	799255	799256	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	5E-8		0.0182514	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	799255	799256	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	2E-8		0.0187504	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	799255	799256	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	2E-11		0.0226537	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
591	chr17_ctg5_hap1	799255	799256	rs11656151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs11656151-G	NR	4E-12		0.0233655	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	801568	801569	rs112385572	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	CRHR1, KANSL1, MAPT, PLEKHM1, SPPL2C, STH	rs112385572-G	NR	8E-29		0.0768246	NR unit decrease	NR [NR] (imputed)	N
591	chr17_ctg5_hap1	802000	802001	rs919462	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	17q21.31	WNT3, MAPT, PLEKHM1	rs919462-C	NR	1E-26		0.168393	[0.14-0.2] unit decrease	Affymetrix [27512692] (imputed)	N
591	chr17_ctg5_hap1	802477	802478	rs713522	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs713522-T	NR	1E-11		6.804	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	802889	802890	rs8079215	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs8079215-?	NR	1E-9		0.01063	[0.0072-0.014] unit decrease	Affymetrix [805426] (imputed)	N
591	chr17_ctg5_hap1	804496	804497	rs2435211	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	17q21.31	MAPT	rs2435211-T		4E-9		1.023	[NR]	Affymetrix [up to 79000000] (imputed)	N
591	chr17_ctg5_hap1	805137	805138	rs6503453	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs6503453-?	NR	3E-9		0.010352	[0.0069-0.0138] unit decrease	Affymetrix [805426] (imputed)	N
591	chr17_ctg5_hap1	805846	805847	rs2435210	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs2435210-T	NR	2E-8		0.01485	[0.0097-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	808768	808769	rs17651507	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	17q21.31	NA	rs17651507-A	0.7274	2E-20		0.0187	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
591	chr17_ctg5_hap1	808850	808851	rs2435207	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs2435207-A	NR	5E-10		6.224	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	809901	809901	rs547116051	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	17q21.31	NR	rs547116051-AC	0.0	2E-8		1.83	[1.49-2.26]	Affymetrix, Illumina [up to 17000000] (imputed)	N
591	chr17_ctg5_hap1	810212	810213	rs3785884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	17q21.31	NR	rs3785884-A	0.230491	1E-93		0.045117	[0.041-0.049] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
591	chr17_ctg5_hap1	810212	810213	rs3785884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	17q21.31	NR	rs3785884-A	0.23073	1E-96		0.045836	[0.042-0.05] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
591	chr17_ctg5_hap1	811040	811041	rs1981997	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	17q21.31	MAPT	rs1981997-G	0.77	9E-14		1.41	[1.28-1.56]	Illumina [439828]	N
591	chr17_ctg5_hap1	813111	813112	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0161546	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0162412	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs754593-G	NR	2E-8		0.0162416	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs754593-G	NR	1E-9		0.010588	[0.0072-0.014] unit decrease	Affymetrix [18485882] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs754593-A	NR	3E-12		6.976	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs754593-?	NR	3E-9		0.01397	[0.0094-0.0186] unit increase	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	813111	813112	rs754593	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs754593-A	NR	2E-8		5.641	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	816220	816221	rs118087478	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs118087478-?	NR	8E-14	(total brain volume)			NR [9227495] (imputed)	N
591	chr17_ctg5_hap1	816221	816222	rs117124984	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	17q21.31	NR	rs117124984-C	0.7853	3E-13		1.0996262	[1.07-1.13]	Affymetrix, Illumina [10858887] (imputed)	N
591	chr17_ctg5_hap1	816405	816406	rs10514889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	17q21.31	MAPT	rs10514889-A	NR	9E-11		0.0207168	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
591	chr17_ctg5_hap1	816405	816406	rs10514889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	17q21.31	MAPT	rs10514889-A	NR	6E-11		0.0209487	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
591	chr17_ctg5_hap1	816981	816982	rs9896485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9896485-C	NR	3E-8		0.0159808	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	816981	816982	rs9896485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9896485-C	NR	1E-10		0.0189294	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	825710	825711	rs62063286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs62063286-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
591	chr17_ctg5_hap1	825710	825711	rs62063286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.31	NR	rs62063286-?	NR	7E-19				Affymetrix [~ 8270000] (imputed)	N
591	chr17_ctg5_hap1	826590	826591	rs56280951	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	17q21.31	ACBD4	rs56280951-A	0.21432	8E-13		7.17	z score increase	NR [10847151] (imputed)	N
591	chr17_ctg5_hap1	828914	828915	rs62063281	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	MAPT	rs62063281-?	NR	3E-8				NR [~ 24000000] (imputed)	N
591	chr17_ctg5_hap1	828914	828915	rs62063281	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	17q21.31	NR	rs62063281-G	0.22	5E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 17000000] (imputed)	N
591	chr17_ctg5_hap1	828914	828915	rs62063281	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	17q21.31	STH	rs62063281-A	0.7784	4E-15		0.022359965	[0.017-0.028] unit increase	Affymetrix [11515109] (imputed)	N
591	chr17_ctg5_hap1	830206	830207	rs17650842	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs17650842-A	0.21663	2E-12		7.01	z score decrease	NR [~ 10847151] (imputed)	N
591	chr17_ctg5_hap1	833117	833118	rs55746658	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	17q21.31		rs55746658-?	NR	2E-6		4.72	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
591	chr17_ctg5_hap1	833117	833118	rs55746658	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	17q21.31		rs55746658-?	NR	2E-6		4.72	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
591	chr17_ctg5_hap1	840300	840301	rs62062797	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62062797-?		5E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	840927	840928	rs242562	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs242562-?	NR	2E-9		0.01038	[0.007-0.0138] unit decrease	Affymetrix [805426] (imputed)	N
591	chr17_ctg5_hap1	840927	840928	rs242562	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	17q21.31	MAPT	rs242562-?	NR	2E-14	(EA)	191.41	[142.57-240.25] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
591	chr17_ctg5_hap1	841778	841779	rs242559	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	17q21.31	MAPT	rs242559-A	NR	4E-7		0.0422	unit decrease	Illumina [15409056] (imputed)	N
591	chr17_ctg5_hap1	841778	841779	rs242559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	17q21.31	MAPT	rs242559-A	0.767711	4E-43		0.036413994	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr17_ctg5_hap1	841778	841779	rs242559	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs242559-A	NR	1E-13		7.429	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	847977	847978	rs242557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs242557-A	NR	9E-9		0.0166684	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
591	chr17_ctg5_hap1	847977	847978	rs242557	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	17q21.31		rs242557-A	0.456967371	1E-8		0.9372902	[0.916595886-0.958451717]	Illumina [8919992] (imputed)	N
591	chr17_ctg5_hap1	847977	847978	rs242557	31059154	Chen Z	2019-05-06	Mov Disord	Genome-wide survey of copy number variants finds MAPT duplications in progressive supranuclear palsy.	Progressive supranuclear palsy	283 European ancestry cases, 4,472 European ancestry controls	1,178 cases, 3,759 controls	17q21.31	MAPT	rs242557-G	0.48	2E-22		1.9061		Illumina [at least 284674]	N
591	chr17_ctg5_hap1	847977	847978	rs242557	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	17q21.31	MAPT	rs242557-G	0.61	4E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
591	chr17_ctg5_hap1	847977	847978	rs242557	28100725	Chen J	2017-01-18	Neurology	Genome-wide association study identifies MAPT locus influencing human plasma tau levels.	Plasma t-tau levels	463 European ancestry Alzheimer's disease cases, 163 European ancestry individuals with mild cognitive impairment, 151 European ancestry individuals	360 individuals, 27 individuals later diagnosed with mild cognitive impairment	17q21.31	MAPT	rs242557-A	0.3715	1E-12		0.38	NR pg/ml increase	Illumina [316802]	N
591	chr17_ctg5_hap1	847977	847978	rs242557	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	17q21.31	MAPT	rs242557-?	0.35	9E-18	(controlling for rs8070723)	1.43	[1.32-1.54]	Illumina [531451]	N
591	chr17_ctg5_hap1	848586	848587	rs112568425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	17q21.31	MAPT	rs112568425-G	0.279718	1E-14		0.02036243	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
591	chr17_ctg5_hap1	848606	848607	rs141455452	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	17q21.31	Intergenic	rs141455452-T	0.525	6E-7		1.078	[NR]	Illumina [9112387] (imputed)	N
591	chr17_ctg5_hap1	849193	849194	rs62061734	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	17q21.31		rs62061734-C	0.2205	2E-9		0.01775	[0.012-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
591	chr17_ctg5_hap1	849193	849194	rs62061734	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	17q21.31	NR	rs62061734-C	0.2103	8E-12	(EA)	0.0526	[0.038-0.068] unit decrease	Illumina [~ 11800000] (imputed)	N
591	chr17_ctg5_hap1	849282	849283	rs62061733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	17q21.31		rs62061733-?	NR	3E-29				NR [~ 8900000] (imputed)	N
591	chr17_ctg5_hap1	849282	849283	rs62061733	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	NR	rs62061733-A	0.22111	2E-28		11.07	z score decrease	NR [10847151] (imputed)	N
591	chr17_ctg5_hap1	849956	849957	rs11653258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	17q21.31	NR	rs11653258-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
591	chr17_ctg5_hap1	851211	851212	rs572329978	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	17q21.31	MAPT	rs572329978-T	0.9747	1E-12		0.058	[0.042-0.074] unit increase	Affymetrix [18391927] (imputed)	N
591	chr17_ctg5_hap1	852240	852241	rs12150229	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	17q21.31	NR	rs12150229-G	0.2236	4E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
591	chr17_ctg5_hap1	853721	853721	rs55939347	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (mean diffusivity)	17,467 European ancestry individuals	NA	17q21.31	LINC02210-CRHR1, MAPT-AS1, MAPT, KANSL1	rs55939347-TC	0.217426	2E-8		0.29389	[0.19-0.4] unit increase	Affymetrix [NR] (imputed)	N
591	chr17_ctg5_hap1	854210	854211	rs79857651	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs79857651-A	0.215594	9E-20		9.1	z score increase	NR [10847151] (imputed)	N
591	chr17_ctg5_hap1	861084	861085	rs17564829	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	17q21.31	CRHR1, MAPT	rs17564829-G	0.24	2E-9		1.25	[1.16-1.35]	Illumina [237619] (imputed)	N
591	chr17_ctg5_hap1	865386	865387	rs9904290	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	17q21.31		rs9904290-A	0.427	1E-9				Affymetrix [10369434] (imputed)	N
591	chr17_ctg5_hap1	865386	865387	rs9904290	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs9904290-?	NR	2E-9		0.01443	[0.0097-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	870119	870120	rs138181598	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	17q21.31	MAPT	rs138181598-?	NR	9E-6		0.463	[0.27-0.66] unit decrease	Illumina [6319684] (imputed)	N
591	chr17_ctg5_hap1	871502	871503	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	3E-11		0.0191884	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	871502	871503	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	1E-11		0.0195227	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	871502	871503	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	1E-8		0.0165211	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
591	chr17_ctg5_hap1	871502	871503	rs8080903	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs8080903-T	NR	5E-11		0.0191014	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	872983	872984	rs17649553	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	17q21.31	ARHGAP27, CRHR1, KANSL1, SPPL2C, MAPT, STH	rs17649553-C	0.779	1E-68		1.2820514	[1.25-1.32]	Illumina [11933700] (imputed)	N
591	chr17_ctg5_hap1	872983	872984	rs17649553	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	17q21.31	MAPT	rs17649553-C	0.774	2E-48		1.3	[1.27-1.34]	Illumina [7893274] (imputed)	N
591	chr17_ctg5_hap1	873607	873608	rs35908989	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	MAPT	rs35908989-C	0.23	1E-8				NR [9312144] (imputed)	N
591	chr17_ctg5_hap1	874252	874253	rs3785880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	17q21.31		rs3785880-?	NR	3E-8				NR [~ 8900000] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		7E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		6E-10	(External capsule )			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		5E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		4E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9899833-?		3E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	874685	874686	rs9899833	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT	rs9899833-G	NR	5E-15		0.013529	[0.01-0.017] unit increase	Affymetrix [18485882] (imputed)	N
591	chr17_ctg5_hap1	876021	876022	rs9913462	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	17q21.31	MAPT	rs9913462-C	0.893	3E-6		1.2048466	1.11978141-1.29637389	Affymetrix, Illumina [7701827] (imputed)	N
591	chr17_ctg5_hap1	876468	876469	rs17563986	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	17q21.31	MAPT	rs17563986-?	NR	5E-12		6.905	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
591	chr17_ctg5_hap1	876468	876469	rs17563986	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	17q21.31	MAPT	rs17563986-?	NR	8E-8		5.368	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
591	chr17_ctg5_hap1	882104	882105	rs3785879	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs3785879-A	NR	1E-10		0.01549	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	882104	882105	rs3785879	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs3785879-A	NR	6E-10		6.196	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	887615	887616	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	3E-12		0.0214776	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	887615	887616	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	2E-12		0.0217009	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	887615	887616	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	1E-10		0.0199595	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
591	chr17_ctg5_hap1	887615	887616	rs930119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs930119-A	NR	1E-12		0.0220895	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	888598	888599	rs1560312	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1560312-A	NR	5E-21		9.409	z score decrease	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	888598	888599	rs1560312	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs1560312-?	NR	1E-16		0.02016	[0.015-0.025] unit increase	Affymetrix [10847151] (imputed)	N
591	chr17_ctg5_hap1	889740	889741	rs28646281	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs28646281-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
591	chr17_ctg5_hap1	889740	889741	rs28646281	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT	rs28646281-T	NR	1E-10		6.445	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	889759	889760	rs1864325	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	17q21.31	MAPT	rs1864325-T	0.22	5E-11		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
591	chr17_ctg5_hap1	890784	890785	rs11079727	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	MAPT	rs11079727-?	NR	2E-9		0.010276	[0.0069-0.0136] unit decrease	Affymetrix [805426] (imputed)	N
591	chr17_ctg5_hap1	890913	890914	rs9303523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	MAPT	rs9303523-C	NR	5E-13		0.0214657	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
591	chr17_ctg5_hap1	890913	890914	rs9303523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	MAPT	rs9303523-C	NR	1E-10		0.0193735	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
591	chr17_ctg5_hap1	892182	892183	rs62056789	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	MAPT	rs62056789-C	0.3822	3E-12		0.017144047	[0.012-0.022] unit decrease	Affymetrix [up to 18485882] (imputed)	N
591	chr17_ctg5_hap1	892182	892183	rs62056789	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	17q21.31	MAPT	rs62056789-C	NR	3E-11		0.013291	[0.0094-0.0172] unit decrease	Affymetrix [18485882] (imputed)	N
591	chr17_ctg5_hap1	894339	894340	rs76324150	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	17q21.31	ARHGAP27, MAPT, STH, NSF, WNT3	rs76324150-?		8E-16				Affymetrix, Illumina [NR] (imputed)	N
591	chr17_ctg5_hap1	897270	897271	rs8065165	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs8065165-T	NR	4E-10		6.265	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
591	chr17_ctg5_hap1	902472	902473	rs112436750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	17q21.31	MAPT-AS1	rs112436750-A	0.232488	2E-25		0.027528536	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr17_ctg5_hap1	903035	903036	rs62055546	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	17q21.31	MAPT	rs62055546-A	0.7779	8E-25		0.027622232	[0.022-0.033] unit increase	Affymetrix [11514936] (imputed)	N
591	chr17_ctg5_hap1	903063	903064	rs62055544	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs62055544-A	0.216596	5E-16		8.1	z score decrease	NR [10847151] (imputed)	N
591	chr17_ctg5_hap1	908006	908007	rs544055237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	17q21.31		rs544055237-C	NR	5E-20		0.0267	[0.021-0.032] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
591	chr17_ctg5_hap1	913877	913878	rs2214258	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs2214258-C	0.21533	2E-25		10.415	z score increase	Illumina [18485882] (imputed)	N
591	chr17_ctg5_hap1	916604	916605	rs10491140	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs10491140-?	NR	3E-26		0.0257143	[0.021-0.031] unit increase	Affymetrix [20259828] (imputed)	N
591	chr17_ctg5_hap1	917135	917136	rs113722063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	17q21.31		rs113722063-C	NR	6E-30		0.0345	[0.029-0.04] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
591	chr17_ctg5_hap1	917139	917140	rs62055489	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	17q21.31	NR	rs62055489-A	0.2195	1E-17				NR [9056863] (imputed)	N
591	chr17_ctg5_hap1	917258	917259	rs9898399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT-AS1	rs9898399-G	NR	3E-13		0.0215566	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
592	chr17_ctg5_hap1	922276	922277	rs1158660	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs1158660-A	NR	8E-10		6.147	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr17_ctg5_hap1	927543	927544	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	6E-15		0.0239	[0.018-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
592	chr17_ctg5_hap1	927543	927544	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	3E-46		0.0415	[0.036-0.047] unit decrease	Affymetrix [19819130] (imputed)	N
592	chr17_ctg5_hap1	927543	927544	rs79412431	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	17q21.31	MAPT-AS1	rs79412431-A	0.2161	3E-49		0.0426	[0.037-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
592	chr17_ctg5_hap1	928165	928166	rs56026232	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Thalamus volume	30,114 white British ancestry individuals			MAPT-AS1	rs56026232-C	0.2109	2E-10		36.0549	[25-47.11] unit decrease	Affymetrix [8165723] (imputed)	N
592	chr17_ctg5_hap1	928350	928351	rs140843301	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs140843301-C	NR	6E-9		0.164049	NR unit decrease	NR [NR] (imputed)	N
592	chr17_ctg5_hap1	930900	930901	rs242934	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs242934-C	NR	2E-9		5.983	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		MAPT	rs7221167-C	0.396	3E-8		0.847932	[0.799836-0.898921}	Illumina [1465938] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls		MAPT-AS1	rs7221167-T	0.581	1E-37		0.1443	[0.12-0.17] unit increase	NR [7784415] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA		NR	rs7221167-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA		NR	rs7221167-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA		MAPT-AS1	rs7221167-T	NR	3E-8		0.0096293	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	934252	934253	rs7221167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA			rs7221167-?	NR	3E-25				NR [~ 8900000] (imputed)	N
592	chr17_ctg5_hap1	934382	934383	rs10445368	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	17q21.31	VCAN	rs10445368-?		2E-38				NR [7428630] (imputed)	N
592	chr17_ctg5_hap1	934755	934756	rs10445367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	17q21.31		rs10445367-T	NR	1E-18		0.0282	[0.022-0.034] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
592	chr17_ctg5_hap1	934755	934756	rs10445367	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs10445367-?		1E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	934756	934757	rs10445366	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	17q21.31	MAPT-AS1	rs10445366-C	0.1843	7E-11		0.0886	[0.062-0.115] unit decrease	NR [9744772] (imputed)	N
592	chr17_ctg5_hap1	935230	935231	rs140926888	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	17q21.31	NR	rs140926888-?	NR	8E-6		0.2646	[0.15-0.38] unit increase	Illumina [at least 560000] (imputed)	N
592	chr17_ctg5_hap1	940253	940254	rs17769552	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	17q21.31	SPPL2C	rs17769552-A	0.2235	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
592	chr17_ctg5_hap1	941085	941086	rs143942024	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs143942024-T	NR	5E-8		0.167697	NR unit decrease	NR [NR] (imputed)	N
592	chr17_ctg5_hap1	942242	942243	rs17690703	24429156	Noth I	2013-04-17	Lancet Respir Med	Genetic variants associated with idiopathic pulmonary fibrosis susceptibility and mortality: a genome-wide association study.	Idiopathic pulmonary fibrosis	542 European ancestry cases, 542 European ancestry controls	868 European ancestry cases, 1,389 European ancestry controls	17q21.31	SPPL2C, KANSL1, MAPT, CRHR1, STH	rs17690703-C	0.76	6E-9		1.43	[1.27-1.61]	Affymetrix [10601812] (imputed)	N
592	chr17_ctg5_hap1	943320	943321	rs12373124	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		17q21.31	NR	rs12373124-C	NR	1E-27		0.08	NR unit decrease	NR [NR] (imputed)	N
592	chr17_ctg5_hap1	943320	943321	rs12373124	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	17q21.31	intergenic	rs12373124-T	0.438	5E-10		1.33	[1.21-1.45]	Affymetrix, Illumina [2391230] (imputed)	N
592	chr17_ctg5_hap1	943339	943340	rs12373142	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	17q21.31	SPPL2C	rs12373142-G	0.22	2E-10		1.08	[1.05 -1.1]	Illumina [at least 109036]	N
592	chr17_ctg5_hap1	943339	943340	rs12373142	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	17q21.31	SPPL2C	rs12373142-G	0.22	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
592	chr17_ctg5_hap1	943466	943467	rs12373123	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset) in APOE e4 non-carriers	7,185 European ancestry individuals	5,416 European ancestry individuals	17q21.31		rs12373123-?	NR	7E-8		0.861		NR [98334]	N
592	chr17_ctg5_hap1	943466	943467	rs12373123	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	SPPL2C	rs12373123-C		2E-61		0.044	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
592	chr17_ctg5_hap1	943856	943857	rs12185268	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 1,986 controls	NA	17q21.31	MAPT	rs12185268-?	NR	1E-9		3.46	[2.27-5.28]	Illumina [533898] (imputed)	N
592	chr17_ctg5_hap1	943856	943857	rs12185268	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	17q21.31	MAPT	rs12185268-A	0.79	3E-14		1.3	[1.22-1.39]	Illumina [522782]	N
592	chr17_ctg5_hap1	943885	943886	rs12185233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	17q21.31	NR	rs12185233-C	0.2133	2E-14		0.0159	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
592	chr17_ctg5_hap1	944359	944360	rs242944	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	MAPT-AS1, SPPL2C	rs242944-G	NR	3E-8		0.0157419	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
592	chr17_ctg5_hap1	948433	948434	rs2106785	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	ACBD4	rs2106785-T	0.213768	3E-13		7.29	z score increase	NR [~ 10847151] (imputed)	N
592	chr17_ctg5_hap1	948442	948443	rs2106786	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs2106786-?	NR	3E-8	(right pallidum)			NR [9227495] (imputed)	N
592	chr17_ctg5_hap1	948442	948443	rs2106786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.31	SPPL2C	rs2106786-G	0.2242	3E-36		0.0537452	[0.045-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr17_ctg5_hap1	948470	948471	rs2316766	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs2316766-T	0.2061	3E-7	(average)	0.003725959	[0.0023-0.0051] unit increase	Affymetrix, Illumina [NR]	N
592	chr17_ctg5_hap1	950388	950389	rs242947	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	MAPT-AS1	rs242947-G	NR	5E-8		0.0095068	[0.0061-0.0129] unit decrease	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	950388	950389	rs242947	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs242947-A	NR	9E-13		7.144	z score decrease	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	950388	950389	rs242947	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs242947-?	NR	6E-9		0.01361	[0.009-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	952026	952027	rs62054807	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	CRHR1	rs62054807-?	NR	2E-11		1.4929	[1.06-1.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr17_ctg5_hap1	952026	952027	rs62054807	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62054807-?		1E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	952026	952027	rs62054807	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62054807-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	952026	952027	rs62054807	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	CRHR1	rs62054807-C	NR	2E-16		0.014157	[0.011-0.018] unit increase	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	955793	955794	rs242949	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs242949-T	NR	2E-8		5.621	z score decrease	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	956066	956067	rs1876829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	17q21.31	NR	rs1876829-C	0.22	7E-17		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
592	chr17_ctg5_hap1	956066	956067	rs1876829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	17q21.31	NR	rs1876829-C	0.22	5E-8				Affymetrix [2446094] (imputed)	N
592	chr17_ctg5_hap1	957054	957055	rs17689966	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	CRHR1	rs17689966-A	0.4354	2E-8		0.011534764	[0.0075-0.0155] unit increase	Affymetrix [up to 18485882] (imputed)	N
592	chr17_ctg5_hap1	957054	957055	rs17689966	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	17q21.31	CRHR1	rs17689966-G	0.44	4E-6		0.77	[0.44-1.1] g/day increase	Affymetrix [10353649] (imputed)	N
592	chr17_ctg5_hap1	958109	958110	rs242951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1	rs242951-C	NR	3E-8		0.0158025	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
592	chr17_ctg5_hap1	958109	958110	rs242951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	CRHR1	rs242951-C	NR	5E-9		0.0168559	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
592	chr17_ctg5_hap1	959388	959389	rs16940672	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	17q21.31	CRHR1	rs16940672-T	0.218	2E-16		0.020259092	[0.015-0.025] unit decrease	Affymetrix [up to 18485882] (imputed)	N
592	chr17_ctg5_hap1	960718	960719	rs17689882	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	17q21.31	CRHR1	rs17689882-A	0.22	8E-9	(Intracranial volume, EA)	13460.47	[8891.61-18029.33] mm3 decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr17_ctg5_hap1	963704	963705	rs62057151	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	NR	rs62057151-T	0.223812	1E-9		6.049	unit increase	NR [10847151] (imputed)	N
592	chr17_ctg5_hap1	965005	965006	rs4327090	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs4327090-A	0.203777	9E-12		0.053262334	[0.038-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
592	chr17_ctg5_hap1	965005	965006	rs4327090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	17q21.31	Intergenic	rs4327090-A	0.8074	1E-10		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
592	chr17_ctg5_hap1	966472	966473	rs173365	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	17q21.31	CRHR1	rs173365-?	NR	4E-10	(EA)	0.881	[0.61-1.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr17_ctg5_hap1	969823	969824	rs79600142	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs79600142-T	0.79	1E-43	(total)	1414.6256	[1214.65-1614.6] unit increase	Affymetrix, Illumina [NR]	N
592	chr17_ctg5_hap1	971508	971509	rs62057107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	17q21.31	Intergenic	rs62057107-T	0.2219	4E-28	(MTAG)	0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr17_ctg5_hap1	971508	971509	rs62057107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	17q21.31	Intergenic	rs62057107-T	0.2192	5E-38	(MTAG)	0.0209	[0.018-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
592	chr17_ctg5_hap1	973820	973821	rs8072451	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	17q21.31	MAPT, GRN, CRHR1, STH	rs8072451-?	NR	1E-8	(Intracranial volume, EA)	14489.99	[9539.28-19440.70] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr17_ctg5_hap1	975889	975890	rs242942	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	17q21.31	NR	rs242942-?	NR	3E-9				Illumina [7760689] (imputed)	N
592	chr17_ctg5_hap1	987480	987481	rs110402	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs110402-G	NR	5E-8		0.0095317	[0.0061-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	993800	993801	rs4458044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs4458044-C	0.2581	6E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
592	chr17_ctg5_hap1	995546	995547	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	17q21.31		rs56319902-T	0.24	2E-15				NR [13131314] (imputed)	N
592	chr17_ctg5_hap1	995546	995547	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	17q21.31		rs56319902-T	0.24	3E-6				Affymetrix [9061022] (imputed)	N
592	chr17_ctg5_hap1	995546	995547	rs56319902	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	17q21.31		rs56319902-T	0.24	1E-230		32.43	z score increase	Affymetrix [9061022] (imputed)	N
592	chr17_ctg5_hap1	995546	995547	rs56319902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	17q21.31		rs56319902-T	0.2155	6E-33		0.0206	[0.017-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
592	chr17_ctg5_hap1	996381	996382	rs12944712	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	17q21.31	NR	rs12944712-A	0.465863776253094	2E-9		0.011895811	[0.008-0.0158] unit increase	NR [NR]	N
592	chr17_ctg5_hap1	1007891	1007892	rs62057070	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	17q21.31	NR	rs62057070-A	0.7896	5E-13	(Fusiform)	17.640184	[12.86-22.42] unit increase	Affymetrix, Illumina [NR]	N
592	chr17_ctg5_hap1	1008126	1008127	rs12942300	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	17q21.31	Intergenic	rs12942300-T	0.829	2E-6		1.0893246	[NR]	Illumina [9112387] (imputed)	N
592	chr17_ctg5_hap1	1009541	1009542	rs111433752	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	17q21.31	Intergenic	rs111433752-T	0.79	9E-12		0.12	[0.085-0.155] unit decrease	Affymetrix [7207648] (imputed)	N
592	chr17_ctg5_hap1	1010300	1010301	rs11869294	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	17q21.31	NR	rs11869294-G		2E-6		0.2274	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
592	chr17_ctg5_hap1	1010884	1010885	rs62057061	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs62057061-G	NR	2E-22		0.02689	[0.021-0.032] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1011065	1011066	rs35076622	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	17q21.31	RP11-105N13.4	rs35076622-?	NR	3E-12		0.01452853	[0.01-0.019] unit decrease	NR [7306098]	N
592	chr17_ctg5_hap1	1011065	1011066	rs35076622	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35076622-G	NR	1E-9		0.010583	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	1011065	1011066	rs35076622	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35076622-A	NR	6E-9		5.812	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr17_ctg5_hap1	1011921	1011922	rs4076453	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs4076453-A	NR	3E-16		8.161	z score increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1012922	1012923	rs34186148	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34186148-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	1012922	1012923	rs34186148	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs34186148-?		7E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	1012922	1012923	rs34186148	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs34186148-C	NR	4E-15		7.869	z score increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1012922	1012923	rs34186148	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs34186148-?	NR	7E-13		0.01715	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1013075	1013076	rs12938031	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs12938031-?	NR	3E-8	(total brain volume)			NR [9227495] (imputed)	N
592	chr17_ctg5_hap1	1013075	1013076	rs12938031	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs12938031-A	NR	2E-12		0.012214	[0.0088-0.0156] unit increase	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	1013075	1013076	rs12938031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs12938031-G	NR	3E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1013075	1013076	rs12938031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs12938031-?	NR	1E-9		0.01436	[0.0097-0.019] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1013075	1013076	rs12938031	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs12938031-A	NR	6E-9		5.826	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
592	chr17_ctg5_hap1	1013655	1013656	rs56303031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	17q21.31		rs56303031-?	NR	6E-24				NR [~ 8900000] (imputed)	N
592	chr17_ctg5_hap1	1016079	1016080	rs35909029	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs35909029-T	NR	2E-10		6.385	z score increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1016079	1016080	rs35909029	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs35909029-?	NR	2E-8		0.01299	[0.0085-0.0175] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1016645	1016646	rs113518470	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	17q21.31	LRRC37A3, CRHR1	rs113518470-?	NR	6E-11		0.09	[0.116-0.063] unit decrease	Illumina [12039492] (imputed)	N
592	chr17_ctg5_hap1	1018159	1018160	rs79730878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	17q21.31	CRHR1-IT1-CRHR1	rs79730878-T	0.771203	6E-20		0.0202142	[0.016-0.025] unit increase	NR [13737936] (imputed)	N
592	chr17_ctg5_hap1	1018824	1018825	rs62055935	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	17q21.31	NR	rs62055935-T	0.214475	2E-15		7.97	z score decrease	NR [10847151] (imputed)	N
592	chr17_ctg5_hap1	1022088	1022089	rs58089049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs58089049-C	0.72549	3E-13				Affymetrix, Illumina [23472807] (imputed)	N
592	chr17_ctg5_hap1	1022088	1022089	rs58089049	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	17q21.31	NR	rs58089049-C	0.725554	3E-14		0.016225	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
592	chr17_ctg5_hap1	1023008	1023009	rs55657917	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	17q21.31	LINC02210-CRHR1	rs55657917-T	0.779584	8E-12		0.036815435	[0.026-0.047] SD units decrease	NR [9926106] (imputed)	N
592	chr17_ctg5_hap1	1023008	1023009	rs55657917	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	17q21.31	CRHR1	rs55657917-T	0.78	5E-12		0.3	milli-gravities decrease	Affymetrix [11800000] (imputed)	N
592	chr17_ctg5_hap1	1023008	1023009	rs55657917	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	HOXB2	rs55657917-T	0.213403	7E-29		11.16	z score decrease	NR [10847151] (imputed)	N
592	chr17_ctg5_hap1	1023008	1023009	rs55657917	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	HOXB2	rs55657917-T	0.213403	3E-20		9.23	z score decrease	NR [10847151] (imputed)	N
592	chr17_ctg5_hap1	1027625	1027626	rs11079718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs11079718-T	0.223963	5E-45		0.037800062	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
592	chr17_ctg5_hap1	1028855	1028856	rs62055888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	17q21.31		rs62055888-T	NR	2E-54		0.0364	[0.032-0.041] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
592	chr17_ctg5_hap1	1030632	1030633	rs56214516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	17q21.31		rs56214516-C	NR	2E-8		0.0487	[0.032-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
592	chr17_ctg5_hap1	1030632	1030633	rs56214516	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	17q21.31	CRHR1	rs56214516-C	0.192373	1E-8		0.049012262	[0.032-0.066] unit increase	Affymetrix [7288503] (imputed)	N
592	chr17_ctg5_hap1	1030632	1030633	rs56214516	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	17q21.31	NR	rs56214516-A	0.189219	1E-16		8.27	z score decrease	NR [10847151] (imputed)	N
592	chr17_ctg5_hap1	1030920	1030921	rs8068589	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs8068589-?		7E-9	(External capsule )			NR [8955960] (imputed)	N
592	chr17_ctg5_hap1	1036659	1036660	rs17426174	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	17q21.31	RP11-105N13.4	rs17426174-C	NR	6E-11		0.023148796	[0.016-0.03] unit decrease	Affymetrix [NR]	N
592	chr17_ctg5_hap1	1036768	1036769	rs11650571	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs11650571-T	NR	2E-9		0.010486	[0.0071-0.0139] unit decrease	Affymetrix [18485882] (imputed)	N
592	chr17_ctg5_hap1	1040835	1040836	rs12150672	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	17q21.31	NR	rs12150672-?	NR	4E-9				NR [2500000] (imputed)	N
592	chr17_ctg5_hap1	1043108	1043109	rs7207400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	17q21.31		rs7207400-?	NR	2E-30				NR [~ 8900000] (imputed)	N
592	chr17_ctg5_hap1	1043108	1043109	rs7207400	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs7207400-C	NR	2E-15		0.02119	[0.016-0.026] unit increase	Affymetrix [10847151] (imputed)	N
592	chr17_ctg5_hap1	1043108	1043109	rs7207400	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	17q21.31	CRHR1	rs7207400-T	0.75	5E-6		1.1363636	[1.08-1.2]	NR [NR]	N
592	chr17_ctg5_hap1	1044696	1044697	rs9906974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs9906974-C	0.218668	1E-45		0.038292967	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr17_ctg5_hap1	1052320	1052321	rs7220839	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	17q21.31	NR	rs7220839-C	NR	2E-8		0.01334	[0.0087-0.018] unit increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1056384	1056385	rs17563683	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	MGC57346-CRHR1, SPPL2C	rs17563683-G		4E-61		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
593	chr17_ctg5_hap1	1056384	1056385	rs17563683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q21.31	CRHR1, RP11-105N13.4, RP11-293E1.1	rs17563683-G	0.2333	3E-26		0.04344178	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1056384	1056385	rs17563683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q21.31	CRHR1, RP11-105N13.4, RP11-293E1.1	rs17563683-G	0.2333	2E-28		0.04515636	[0.037-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1056560	1056561	rs77804065	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	17q21.31	CRHR1	rs77804065-T	NR	2E-12	(EA)	0.0711	NR unit decrease	Affymetrix [up to 6007810] (imputed)	N
593	chr17_ctg5_hap1	1056560	1056561	rs77804065	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs77804065-T	NR	1E-31		11.693	z score increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1056560	1056561	rs77804065	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	17q21.31	ACBD4	rs77804065-T	0.217158	6E-10		6.18	z score increase	NR [10847151] (imputed)	N
593	chr17_ctg5_hap1	1056560	1056561	rs77804065	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	17q21.31	LINC02210, CRHR1, MAPT	rs77804065-T	NR	6E-15		0.013	[0.0097-0.0163] unit increase	Affymetrix [9304965] (imputed)	N
593	chr17_ctg5_hap1	1056560	1056561	rs77804065	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	ARHGAP27, CRHR1, KANSL1, MAPT, PLEKHM1, SPPL2C, STH	rs77804065-T	0.21716	8E-26		10.503	z score increase	Illumina [18485882] (imputed)	N
593	chr17_ctg5_hap1	1056583	1056584	rs75022332	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	17q21.31	ACBD4	rs75022332-A	0.213608	2E-8		5.62	z score decrease	NR [10847151] (imputed)	N
593	chr17_ctg5_hap1	1058359	1058360	rs7225384	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs7225384-C	NR	3E-14		7.604	z score decrease	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1058359	1058360	rs7225384	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs7225384-?	NR	5E-9		0.01379	[0.0092-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs9303521-?		2E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs9303521-T	NR	3E-8		0.0097067	[0.0063-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs9303521-T	NR	1E-10		6.437	z score increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs9303521-?	NR	1E-9		0.01413	[0.0096-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	17q21.31	CRHR1, MAPT	rs9303521-G	0.49	7E-7		1.3157895		Illumina [4903804] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	17q21.31	CRHR1	rs9303521-T	0.46	1E-8		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
593	chr17_ctg5_hap1	1062227	1062228	rs9303521	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	17q21.31	CRHR1	rs9303521-T	0.46	4E-6		0.06	[0.04-0.07] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
593	chr17_ctg5_hap1	1063235	1063236	rs35116560	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs35116560-T	NR	9E-10		6.127	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr17_ctg5_hap1	1064916	1064917	rs7218457	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs7218457-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	17q21.31		rs55938136-A	0.774	3E-14				Affymetrix [10369434] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	17q21.31		rs55938136-A	0.774	5E-17				Affymetrix [10369434] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	17q21.31		rs55938136-A	0.774	4E-14				Affymetrix [10369434] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	CRHR1	rs55938136-G	0.22	5E-15				NR [9312144] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	17q21.31	NR	rs55938136-?	NR	8E-13	(total brain volume)			NR [9227495] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		9E-9	(Average across all tracts)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		7E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		5E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-10	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		9E-10	(External capsule )			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-12	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		5E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		1E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		3E-9	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069062	1069063	rs55938136	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs55938136-?		1E-8	(External capsule )			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1069074	1069074	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-13		0.0242957	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
593	chr17_ctg5_hap1	1069074	1069074	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-13		0.0243254	[0.018-0.031] unit increase	Affymetrix [319769] (imputed)	N
593	chr17_ctg5_hap1	1069074	1069074	rs3072094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs3072094-T	NR	4E-10		0.0209349	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
593	chr17_ctg5_hap1	1069074	1069074	rs3072094	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs3072094-TTTG	NR	3E-9		1.0787487	[1.05-1.1]	Affymetrix [7846216] (imputed)	N
593	chr17_ctg5_hap1	1069114	1069115	rs117615688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	17q21.31	NR	rs117615688-A	NR	2E-12		0.0353	[0.026-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr17_ctg5_hap1	1069114	1069115	rs117615688	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs117615688-A	0.067	7E-16		0.2324	[0.18-0.29] unit decrease	NR [7784415] (imputed)	N
593	chr17_ctg5_hap1	1072009	1072010	rs11655470	22504419	Taal HR	2012-04-15	Nat Genet	Common variants at 12q15 and 12q24 are associated with infant head circumference.	Head circumference (infant)	10,768 European ancestry infants	8,321 European ancestry infants	17q21.31	MAPT, CRHR1	rs11655470-T	0.49	4E-6		0.048	[0.028-0.068] SD increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
593	chr17_ctg5_hap1	1077323	1077324	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	17q21.31		rs62056934-G	0.24	3E-203		30.42	z score increase	Affymetrix [9061022] (imputed)	N
593	chr17_ctg5_hap1	1077323	1077324	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	17q21.31		rs62056934-G	0.24	9E-12				NR [13131314] (imputed)	N
593	chr17_ctg5_hap1	1077323	1077324	rs62056934	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	17q21.31		rs62056934-G	0.24	3E-140		25.21	z score increase	Affymetrix [9061022] (imputed)	N
593	chr17_ctg5_hap1	1077618	1077619	rs113100008	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs113100008-C	NR	2E-10		6.371	z score decrease	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1081971	1081972	rs61667602	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	17q21.31	CRHR1	rs61667602-?	NR	1E-13		7.439	NR z score increase	Affymetrix [up to 6007810] (imputed)	N
593	chr17_ctg5_hap1	1083095	1083096	rs9912362	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs9912362-T	0.3594	2E-13		0.077	[0.057-0.097] unit increase	NR [7784415] (imputed)	N
593	chr17_ctg5_hap1	1083983	1083984	rs1526123	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1526123-T	NR	3E-9		0.010348	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
593	chr17_ctg5_hap1	1083983	1083984	rs1526123	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1526123-T	NR	2E-10		6.403	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr17_ctg5_hap1	1085576	1085577	rs1724425	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1724425-C	NR	4E-11		0.011456	[0.0081-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
593	chr17_ctg5_hap1	1085576	1085577	rs1724425	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs1724425-T	NR	7E-11		6.531	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr17_ctg5_hap1	1086245	1086246	rs117560908	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	17q21.31	NR	rs117560908-C	0.23161	3E-10		0.0469897	[0.032-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
593	chr17_ctg5_hap1	1086245	1086246	rs117560908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	17q21.31	Intergenic	rs117560908-T	0.2663	2E-14	(MTAG)	0.0204	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
593	chr17_ctg5_hap1	1086245	1086246	rs117560908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	17q21.31	Intergenic	rs117560908-T	0.2663	2E-10		0.0211	[0.015-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
593	chr17_ctg5_hap1	1088655	1088656	rs17688916	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	17q21.31	KIAA1267, LOC644246	rs17688916-T	NR	1E-11		1.074		Affymetrix [14661600] (imputed)	N
593	chr17_ctg5_hap1	1088655	1088656	rs17688916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	17q21.31	SPATA32	rs17688916-A	0.196725	3E-11		6.653	unit increase	NR [10847151] (imputed)	N
593	chr17_ctg5_hap1	1090006	1090007	rs1724422	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1724422-A	NR	6E-16		8.092	z score decrease	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1090006	1090007	rs1724422	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	17q21.31	NR	rs1724422-?	NR	1E-11		0.01616	[0.012-0.021] unit increase	Affymetrix [10847151] (imputed)	N
593	chr17_ctg5_hap1	1090577	1090578	rs80143279	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	17q21.31	NR	rs80143279-C	NR	8E-22		0.02682	NR unit increase	NR [7259579]	N
593	chr17_ctg5_hap1	1090578	1090579	rs76761706	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	17q21.31	NR	rs76761706-T	0.215553	7E-32		11.76	z score decrease	NR [10847151] (imputed)	N
593	chr17_ctg5_hap1	1108409	1108410	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	17q21.31	NR	rs57222984-A	NR	5E-8		0.00872	[0.0056-0.0118] unit decrease	NR [11010159] (imputed)	N
593	chr17_ctg5_hap1	1108409	1108410	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	17q21.31	NR	rs57222984-A	NR	5E-12		0.00843452	[0.006-0.0108] unit decrease	NR [11010159] (imputed)	N
593	chr17_ctg5_hap1	1108409	1108410	rs57222984	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	17q21.31	NR	rs57222984-A	NR	8E-11	(adjusted for BMI)	0.00784	[0.0055-0.0102] unit decrease	NR [11010159] (imputed)	N
593	chr17_ctg5_hap1	1108409	1108410	rs57222984	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs57222984-G	0.2423	3E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
593	chr17_ctg5_hap1	1108520	1108521	rs62055701	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	17q21.31	NR	rs62055701-A	0.214491	6E-13		7.19	z score increase	NR [~ 10847151] (imputed)	N
593	chr17_ctg5_hap1	1109189	1109190	rs62055696	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	17q21.31		rs62055696-A	0.78	1E-11		0.309	[0.22-0.4] unit decrease	Affymetrix [8918919] (imputed)	N
593	chr17_ctg5_hap1	1109189	1109190	rs62055696	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	50,331 European ancestry women	NA	17q21.31		rs62055696-A	0.78	1E-9		0.358	[0.24-0.47] unit decrease	Affymetrix [8918919] (imputed)	N
593	chr17_ctg5_hap1	1109860	1109861	rs55974014	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	17q21.31	CRHR1	rs55974014-A	0.2142	3E-30		0.9498902	[NR]	Illumina [12493444] (imputed)	N
593	chr17_ctg5_hap1	1112462	1112463	rs62055691	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	17q21.31	CRHR1	rs62055691-C	0.225	2E-23		0.0303	[0.024-0.036] unit decrease	Illumina [~ 250000] (imputed)	N
593	chr17_ctg5_hap1	1115407	1115408	rs1635291	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	17q21.31	CRHR1	rs1635291-A	0.754	7E-9		5.803	NR z score increase	Affymetrix [11141077] (imputed)	N
593	chr17_ctg5_hap1	1118608	1118609	rs143699161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	17q21.31	Intergenic	rs143699161-A	0.7717	3E-10	(MTAG)	0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
593	chr17_ctg5_hap1	1118608	1118609	rs143699161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs143699161-A	NR	3E-8		5.542	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr17_ctg5_hap1	1122978	1122979	rs1635298	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	17q21.31	CRHR1	rs1635298-A	NR	3E-8		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
593	chr17_ctg5_hap1	1123119	1123120	rs62053943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	17q21.31	CRHR1, RP11-105N13.4	rs62053943-T	NR	1E-10		0.0256218	[0.018-0.033] unit increase	Affymetrix [321169] (imputed)	N
593	chr17_ctg5_hap1	1123119	1123120	rs62053943	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	17q21.31	CRHR1	rs62053943-T	0.1552	4E-68		0.27	[0.24-0.3] unit decrease	NR [7784415] (imputed)	N
593	chr17_ctg5_hap1	1123119	1123120	rs62053943	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs62053943-?		2E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
593	chr17_ctg5_hap1	1123119	1123120	rs62053943	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	17q21.31	CRHR1	rs62053943-T	0.17489	8E-9		0.2957	[0.2-0.4] unit decrease	Illumina [9911207] (imputed)	N
593	chr17_ctg5_hap1	1123119	1123120	rs62053943	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs62053943-C	NR	4E-14		0.012948	[0.0096-0.0163] unit increase	Affymetrix [18485882] (imputed)	N
593	chr17_ctg5_hap1	1126753	1126754	rs1724409	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	17q21.31	MGC57346-CRHR1	rs1724409-T	0.7415	1E-10		0.0075	[0.0051-0.0099] unit increase	Affymetrix [~ 7740000] (imputed)	N
593	chr17_ctg5_hap1	1128124	1128125	rs3843738	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	17q21.31	RP11-105N13.4	rs3843738-A	NR	6E-10		0.010773	[0.0074-0.0142] unit decrease	Affymetrix [18485882] (imputed)	N
593	chr17_ctg5_hap1	1128124	1128125	rs3843738	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	17q21.31		rs3843738-?	NR	2E-20		0.0195325	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
593	chr17_ctg5_hap1	1128124	1128125	rs3843738	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	RP11-105N13.4	rs3843738-A	NR	2E-10		6.335	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
593	chr17_ctg5_hap1	1134528	1134536	rs11276875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	17q21.31	RP11-105N13.4, CRHR1	rs11276875-C	0.742206	1E-35		0.031498797	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
593	chr17_ctg5_hap1	1135597	1135598	rs241036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	17q21.31		rs241036-?	NR	7E-13				NR [~ 8900000] (imputed)	N
593	chr17_ctg5_hap1	1135597	1135598	rs241036	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	NR	rs241036-A	0.217056	8E-20		9.11	z score decrease	NR [10847151] (imputed)	N
593	chr17_ctg5_hap1	1138943	1138944	rs417968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	17q21.31		rs417968-?	NR	6E-16				NR [~ 8900000] (imputed)	N
593	chr17_ctg5_hap1	1148169	1148170	rs393152	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 3,111 controls	67 cases, 457 controls	17q21.31	MAPT	rs393152-?	NR	1E-12		3.7	[NR]	Illumina [533898] (imputed)	N
593	chr17_ctg5_hap1	1148169	1148170	rs393152	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	17q21.31	MAPT, C17orf69, KIAA1267, LOC644246	rs393152-A	0.82	2E-16		1.3	[NR]	Illumina [463185]	N
593	chr17_ctg5_hap1	1152430	1152431	rs2942168	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	17q21.31	MAPT	rs2942168-G	0.78	1E-28		1.27	[1.23-1.31]	Illumina [7689524] (imputed)	N
593	chr17_ctg5_hap1	1161677	1161678	rs365825	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	17q21.31	CRHR1, LRRC37A3	rs365825-?	NR	4E-32		1.2722646	[1.22-1.33]	Illumina [12438219] (imputed)	N
593	chr17_ctg5_hap1	1165818	1165819	rs189358029	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	17q21.31	NR	rs189358029-C	NR	4E-6		4.62	z score increase	NR [9015039] (imputed)	N
593	chr17_ctg5_hap1	1172016	1172017	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2045	6E-9		0.02652443	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1172016	1172017	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	2E-11		0.03056096	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1172016	1172017	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2045	3E-11		0.03035789	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1172016	1172017	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	3E-9		0.02733148	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1172016	1172017	rs675600	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	17q21.31	CRHR1-IT1, CRHR1, RP11-105N13.4	rs675600-T	0.2046	5E-9		0.02673918	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr17_ctg5_hap1	1172912	1172913	rs112997627	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	17q21.31		rs112997627-T	0.801	3E-8	(EA)	5.56	NR z score increase	Illumina [11532091] (imputed)	N
594	chr17_ctg5_hap1	1179867	1179868	rs28768976	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	17q21.31	SPPL2C	rs28768976-A	0.770677	2E-9		0.268112	[0.18-0.36] unit decrease	Affymetrix [8590397] (imputed)	N
594	chr17_ctg5_hap1	1179867	1179868	rs28768976	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	17q21.31	SPPL2C	rs28768976-A	0.772	4E-12		0.255	[0.18-0.33] unit decrease	Affymetrix [8590397] (imputed)	N
594	chr17_ctg5_hap1	1179867	1179868	rs28768976	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs28768976-A	0.77211	1E-25		10.453	z score decrease	Illumina [18485882] (imputed)	N
594	chr17_ctg5_hap1	1181756	1181757	rs385199	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	17q21.31	CRHR1, PLEKHM1	rs385199-A		1E-72		0.0185	[0.017-0.02] unit increase	Affymetrix [13304133] (imputed)	N
594	chr17_ctg5_hap1	1185765	1185766	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	LOC644172, CRHR1	rs150741403-C	0.85	2E-9		35.83	[24.13-47.53] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
594	chr17_ctg5_hap1	1185765	1185766	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31	CRHR1	rs150741403-C	0.84	2E-7	(EA)	40.46	[25.33-55.59] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
594	chr17_ctg5_hap1	1185765	1185766	rs150741403	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		17q21.31		rs150741403-?	NR	1E-9		31.95	[21.68-42.22] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
594	chr17_ctg5_hap1	1196441	1196442	rs2463523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	17q21.31		rs2463523-A	0.76521	3E-17		0.0401451	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
594	chr17_ctg5_hap1	1196441	1196442	rs2463523	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	17q21.31		rs2463523-A	NR	3E-10		1.0887	NR	Affymetrix [7846216] (imputed)	N
594	chr17_ctg5_hap1	1197958	1197959	rs7502280	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	17q21.31	NR	rs7502280-?		2E-7		0.017	[0.011-0.023] unit decrease	Affymetrix [NR]	N
594	chr17_ctg5_hap1	1197958	1197959	rs7502280	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	17q21.31	MAPK8IP1P2	rs7502280-T	0.867	9E-11		0.051	[0.035-0.067] SD units increase	NR [9926106] (imputed)	N
594	chr17_ctg5_hap1	1198248	1198249	rs1724411	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Osteoarthrosis (time to event)	29,071 British ancestry cases, 253,800 British ancestry controls	NA	17q21.31	LRRC37A4P, MAPK8IP1P2	rs1724411-?	NR	3E-8				NR [~ 24000000] (imputed)	N
594	chr17_ctg5_hap1	1198688	1198689	rs112327620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	17q21.31		rs112327620-G	NR	3E-63		0.0388	[0.034-0.043] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
594	chr17_ctg5_hap1	1201687	1201688	rs112010353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	17q21.31	Intergenic	rs112010353-C	0.8237	2E-8		0.0143	[0.0092-0.0194] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
595	chr17_ctg5_hap1	1329044	1329045	rs2532240	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2532240-?		5E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
595	chr17_ctg5_hap1	1329044	1329045	rs2532240	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	17q21.31	NR	rs2532240-?		1E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
595	chr17_ctg5_hap1	1374735	1374736	rs1819040	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	17q21.31		rs1819040-A	0.184	5E-6		0.95716834	[0.9393376873334204-0.9753374551691557]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
595	chr17_ctg5_hap1	1374735	1374736	rs1819040	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	17q21.31		rs1819040-A	0.1855	2E-10		0.8790179	[0.8448494104431585-0.9145683076087429]	Affymetrix, Illumina [NR] (imputed)	N
595	chr17_ctg5_hap1	1428906	1428907	rs3874943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	17q21.31	NR	rs3874943-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
595	chr17_ctg5_hap1	1428906	1428907	rs3874943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	17q21.31	NR	rs3874943-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
595	chr17_ctg5_hap1	1428906	1428907	rs3874943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	17q21.31		rs3874943-?	NR	1E-12				NR [~ 8900000] (imputed)	N
595	chr17_ctg5_hap1	1428906	1428907	rs3874943	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	NSFP1	rs3874943-?	NR	7E-14		0.01303	[0.0096-0.0164] unit increase	Affymetrix [805426] (imputed)	N
595	chr17_ctg5_hap1	1430212	1430213	rs2696685	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	17q21.31	NSFP1, ARL17A	rs2696685-?	NR	4E-8		0.020226918	[0.013-0.027] unit decrease	Illumina [27896057] (imputed)	N
596	chr17_ctg5_hap1	1480639	1480640	rs144216645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	17q21.31	ARL17A, LRRC37A2	rs144216645-T	0.744281	3E-10		0.017155	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
596	chr17_ctg5_hap1	1480639	1480640	rs144216645	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Right-handed vs. non-right-handed)	293,857 British ancestry cases, 37,180 British ancestry controls	NA	17q21.31	STH, KANSL1, ARL17B, ARL17A, LRRC37A, LRRC37A2, NSF	rs144216645-?	NR	2E-8				Affymetrix [~ 15000000] (imputed)	N
596	chr17_ctg5_hap1	1480639	1480640	rs144216645	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Left-handed vs. non-left-handed)	31,856 British ancestry cases, 299,181 British ancestry controls	NA	17q21.31	STH, KANSL1, ARL17B, ARL17A, LRRC37A, LRRC37A2, NSF	rs144216645-?	NR	1E-9				Affymetrix [~ 15000000] (imputed)	N
596	chr17_ctg5_hap1	1482710	1482711	rs199913382	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.31	LRRC37A2	rs199913382-C		3E-54		0.043	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
596	chr17_ctg5_hap1	1482772	1482773	rs1863115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	LRRC37A2	rs1863115-?	NR	7E-21		0.016585	[0.013-0.02] unit increase	Affymetrix [805426] (imputed)	N
596	chr17_ctg5_hap1	1482772	1482773	rs1863115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	17q21.31	NR	rs1863115-?	NR	6E-6		4.512	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
596	chr17_ctg5_hap1	1484493	1484494	rs146980124	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	17q21.31	LRRC37A2	rs146980124-A	0.383726	3E-9		0.0102411	[0.0069-0.0136] unit increase	Affymetrix [12370749]	N
596	chr17_ctg5_hap1	1489312	1489313	rs568039055	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	17q21.31	LRRC37A2, ARL17A	rs568039055-C	0.2	8E-15				NR [9312144] (imputed)	N
596	chr17_ctg5_hap1	1489312	1489313	rs568039055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	17q21.31	NR	rs568039055-C	0.182422	9E-10		0.018382	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
596	chr17_ctg5_hap1	1489312	1489313	rs568039055	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	17q21.31	ARL17A	rs568039055-?	NR	2E-16		0.014099	[0.011-0.017] unit decrease	Affymetrix [805426] (imputed)	N
596	chr17_ctg5_hap1	1490379	1490380	rs62073356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	17q21.31	ARL17A	rs62073356-C	0.5771	3E-32		0.04781853	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr17_ctg5_hap1	1509140	1509141	rs558710130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	17q21.31	NR	rs558710130-G	0.587726	1E-9				Affymetrix, Illumina [21126107] (imputed)	N
596	chr17_ctg5_hap1	1509444	1509445	rs112458826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	17q21.31	NR	rs112458826-G	0.820417	1E-9		0.056205	[0.038-0.074] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
596	chr17_ctg5_hap1	1556626	1556627	rs116956554	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	17q21.31	NSFP1	rs116956554-A	0.179849439222465	3E-12		0.0471	[0.034-0.06] SD increase	Illumina [22400000] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	17q21.31	NR	rs1563304-T	0.1782	4E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	17q21.31	WNT3	rs1563304-T	0.178	3E-12		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	17q21.31	NR	rs1563304-T	NR	5E-12		6.9	z score increase	Affymetrix [10847151] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	17q21.31	MAPT	rs1563304-T	0.172485	1E-11		6.76	z score increase	NR [10847151] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	17q21.31	MAPT	rs1563304-T	0.172485	2E-10		6.37	z score increase	NR [10847151] (imputed)	N
597	chr17_ctg5_hap1	1641814	1641815	rs1563304	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	17q21.31	intergenic	rs1563304-T	0.17248	3E-10		6.281	z score increase	Illumina [18485882] (imputed)	N
597	chr17_ctg5_hap1	1668645	1668646	rs9890413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	17q21.32	NR	rs9890413-A	NR	6E-13		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	17q21.32	WNT3	rs8069437-C	0.768828	3E-18		0.024038427	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	17q21.32	WNT3	rs8069437-C	0.768833	6E-15		0.021651594	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	17q21.32	intergenic	rs8069437-T		1E-21		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	17q21.32	intergenic	rs8069437-T	0.214	2E-6		0.039	[0.023-0.055] unit increase	Affymetrix [7947838] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7693	5E-18		0.03670622	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7694	6E-16		0.03419867	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr17_ctg5_hap1	1674145	1674146	rs8069437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	17q21.32	WNT3	rs8069437-C	0.7693	3E-17		0.03561691	[0.027-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
585	chr18	81641	81642	rs180801787	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	18p11.32	IL9RP4	rs180801787-?	NR	9E-8	(female)	5.0	[2.32-10.75]	Illumina [NR] (imputed)	N
585	chr18	104472	104473	rs56017932	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18p11.32	RP11-683L23.1	rs56017932-G	0.799522	8E-9		0.0154887	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
585	chr18	120295	120296	rs57440971	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18p11.32	ROCK1P1	rs57440971-T	0.06	4E-6	(Age 20-60 years)	0.1413	[0.082-0.201] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
585	chr18	125074	125075	rs4121583	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18p11.32	ROCK1P1	rs4121583-T	0.6192	5E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix [18391927] (imputed)	N
586	chr18	155565	155566	rs4797876	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18p11.32		rs4797876-T	0.28	1E-8		5.74	z score increase	Affymetrix [9061022] (imputed)	N
586	chr18	174202	174203	rs62073490	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USP14	rs62073490-?	NR	5E-9	(female)	4.34511	[NR] unit decrease	Affymetrix [NR] (imputed)	N
586	chr18	186225	186226	rs118184408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.32		rs118184408-?	NR	1E-8				NR [~ 8900000] (imputed)	N
586	chr18	248480	248481	rs59895994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18p11.32		rs59895994-?	NR	7E-12				NR [~ 8900000] (imputed)	N
586	chr18	258283	258284	rs6506015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	18p11.32		rs6506015-G	0.411921	1E-15		0.0166649	[0.013-0.021] unit increase	Illumina [13479295] (imputed)	N
586	chr18	258283	258284	rs6506015	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18p11.32	THOC1	rs6506015-?	NR	4E-20		0.027029743	[0.021-0.033] unit increase	Illumina [27896057] (imputed)	N
586	chr18	259147	259148	rs3744970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.32		rs3744970-A	NR	2E-15		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
587	chr18	268991	268992	rs9948087	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18p11.32	intergenic	rs9948087-A	0.2461	5E-8		0.0151	[0.0096-0.0206] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
587	chr18	273609	273610	rs77001758	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	18p11.32	THOC1	rs77001758-A	0.4	5E-9	(japanese)	0.05	[0.03-0.07] year increase	Illumina [at least 532488] (imputed)	N
587	chr18	273609	273610	rs77001758	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	18p11.32	THOC1	rs77001758-A	0.4	1E-9				Illumina [at least 532488] (imputed)	N
587	chr18	278795	278796	rs7226677	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	18p11.32	COLEC12, THOC1	rs7226677-?	NR	4E-6				Affymetrix, Perlegen [1472580] (imputed)	N
587	chr18	278795	278796	rs7226677	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	18p11.32	COLEC12, THOC1	rs7226677-?	NR	7E-6				Affymetrix [1769948] (imputed)	N
587	chr18	278795	278796	rs7226677	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	18p11.32	NR	rs7226677-G	0.12	7E-6		1.24	[NR]	Affymetrix [1769948] (imputed)	N
587	chr18	279823	279824	rs10432084	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18p11.32	NR	rs10432084-T	0.262	6E-9		0.00715034	[0.0047-0.0096] unit increase	NR [9732723] (imputed)	N
587	chr18	280234	280235	rs4632203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	18p11.32		rs4632203-?	NR	1E-8				NR [~ 8900000] (imputed)	N
587	chr18	280896	280897	rs12456711	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18p11.32	COLEC12	rs12456711-A	0.7351	4E-8		0.013501848	[0.0087-0.0183] unit decrease	Affymetrix [11514654] (imputed)	N
587	chr18	287704	287705	rs8088001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	18p11.32		rs8088001-G	NR	2E-12		0.0291	[0.021-0.037] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
587	chr18	287704	287705	rs8088001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18p11.32		rs8088001-G	0.0717640000000001	7E-11		0.027978122	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
587	chr18	287704	287705	rs8088001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.32	NR	rs8088001-T	0.921061	1E-13				Affymetrix, Illumina [22063850] (imputed)	N
587	chr18	287704	287705	rs8088001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18p11.32	NR	rs8088001-T	0.927493	1E-14		0.028142	[0.021-0.035] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
587	chr18	287704	287705	rs8088001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18p11.32		rs8088001-?	NR	4E-11				NR [~ 8900000] (imputed)	N
587	chr18	289208	289209	rs6506033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18p11.32	THOC1	rs6506033-C	0.927479	1E-9		0.0233834	[0.016-0.031] unit increase	Affymetrix [NR] (imputed)	N
587	chr18	318039	318040	rs9952641	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	18p11.32	COLEC12	rs9952641-A		1E-8		0.063	[0.041-0.085] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
587	chr18	322108	322109	rs7236292	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18p11.32		rs7236292-G	0.36	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
587	chr18	322108	322109	rs7236292	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18p11.32	NR	rs7236292-G	0.3498	2E-9				NR [9056863] (imputed)	N
587	chr18	322521	322522	rs621636	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	COLEC12	rs621636-A	0.131	3E-6	(Hcy )	0.03	[NR] umol/L increase	Illumina [899892]	N
587	chr18	331505	331506	rs505110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.32		rs505110-?	NR	6E-17				NR [~ 8900000] (imputed)	N
587	chr18	355943	355944	rs644435	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	COLEC12	rs644435-G	0.326	4E-6	(Bike energy expenditure )	0.03	[NR] kcal/min increase	Illumina [899892]	N
587	chr18	358578	358579	rs676776	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	18p11.32	COLEC12	rs676776-A	0.6806	9E-6		0.1703	[0.095-0.246] unit increase	NR [NR] (imputed)	N
587	chr18	374349	374350	rs55844407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	18p11.32		rs55844407-T	NR	1E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
587	chr18	374349	374350	rs55844407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18p11.32	NR	rs55844407-T	NR	8E-10		0.0197	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr18	393056	393057	rs72859298	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs72859298-T	0.01045	7E-12	(AGXT)	10.28	NR unit increase	Illumina [1671387] (imputed)	N
588	chr18	442440	442441	rs16944558	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Metabolic syndrome	1,811 Taiwanese Han Chinese ancestry cases, 8,489 Taiwanese Han Chinese ancestry controls	NA	18p11.32	COLEC12	rs16944558-?		1E-6	(additive)	1.2	[1.12-1.30]	Affymetrix [583469]	N
588	chr18	466809	466810	rs2846667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18p11.32	COLEC12	rs2846667-G	0.745	9E-12	(Collectin-12, COLEC12.5457.5.2)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
588	chr18	514470	514471	rs62091368	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	18p11.32	intergenic	rs62091368-A	0.07	4E-6		4.36	[2.33-8.14]	NR [~ 38000000] (imputed)	N
589	chr18	534340	534341	rs495964	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	18p11.32	NR	rs495964-?	NR	2E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
589	chr18	534340	534341	rs495964	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety	5,584 cases, 9,801 controls	NA	18p11.32	NR	rs495964-?	NR	3E-6	(Dominant model)			Affymetrix [NR] (imputed)	N
589	chr18	535956	535957	rs111638182	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	18p11.32	NR	rs111638182-?	NR	1E-7	(Dominant model)			Affymetrix [NR] (imputed)	N
589	chr18	535956	535957	rs111638182	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety	5,584 cases, 9,801 controls	NA	18p11.32	NR	rs111638182-?	NR	3E-6	(Dominant model)			Affymetrix [NR] (imputed)	N
589	chr18	591689	591690	rs12957470	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18p11.32	COLEC12	rs12957470-G	0.695625	6E-9	(COLEC12, 5457_5_2)	0.15453689	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
589	chr18	612818	612819	rs9947236	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	18p11.32	NR	rs9947236-?		3E-6				Illumina [892589]	N
589	chr18	618123	618124	rs518471	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	18p11.32	CLUL1	rs518471-?	NR	6E-6	(Alpha power, occipital)	0.125	[0.072-0.178] unit decrease	Illumina [527829]	N
589	chr18	649310	649311	rs9966612	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	18p11.32	CLUL1, ENOSF1, TYMS	rs9966612-G	0.32	4E-10		1.17	[1.12-1.23]	Illumina [at least 371504] (imputed)	N
590	chr18	658422	658423	rs3891167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18p11.32		rs3891167-G	NR	3E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
590	chr18	658422	658423	rs3891167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18p11.32		rs3891167-G	NR	1E-10		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
590	chr18	658422	658423	rs3891167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18p11.32		rs3891167-G	NR	3E-10		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
590	chr18	658422	658423	rs3891167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18p11.32	TYMS	rs3891167-G	0.257015	4E-14		0.020186026	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
590	chr18	658422	658423	rs3891167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.32	NR	rs3891167-G	0.224645	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
590	chr18	658422	658423	rs3891167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18p11.32		rs3891167-?	NR	3E-11				NR [~ 8900000] (imputed)	N
590	chr18	660441	660442	rs66567989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.32	TYMS	rs66567989-G	0.15548	8E-13		0.023056954	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
590	chr18	660441	660442	rs66567989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18p11.32	TYMS	rs66567989-G	0.155304	3E-13		0.0222858	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
590	chr18	660441	660442	rs66567989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	18p11.32	TYMS	rs66567989-G	0.1573	1E-9		0.03039543	[0.021-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr18	660441	660442	rs66567989	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	18p11.32	TYMS	rs66567989-G	0.1573	6E-9		0.02925671	[0.019-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr18	661916	661917	rs2124616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18p11.32	TYMS	rs2124616-A	0.155949	1E-11		0.020685663	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
590	chr18	661916	661917	rs2124616	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	18p11.32	TYMS	rs2124616-A	0.139988	2E-7		0.037407	[0.023-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
590	chr18	662102	662103	rs1001761	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs1001761-G	0.4652	4E-10	(ENOSF1)	0.004149	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr18	662102	662103	rs1001761	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	18p11.32	TYMS	rs1001761-A	NR	1E-8		0.034	NR unit decrease	Illumina [6407959] (imputed)	N
590	chr18	666624	666625	rs8088781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18p11.32	NR	rs8088781-T	0.154384	1E-16		0.020909	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
590	chr18	668464	668465	rs16948305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.32	NR	rs16948305-T	0.126232	6E-14				Affymetrix, Illumina [24246363] (imputed)	N
590	chr18	668464	668465	rs16948305	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18p11.32	NR	rs16948305-T	0.155797	4E-12		0.018531	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
590	chr18	673085	673086	rs2790	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	18p11.32	TYMS	rs2790-G	0.21	4E-15	(ribonate)	0.141	[0.11-0.18] unit decrease	Illumina [7750367] (imputed)	N
590	chr18	677930	677931	rs2298581	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	18p11.32	ENOSF1	rs2298581-C	0.780428	2E-12	(arabonate/xylonate)	0.182	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
590	chr18	683606	683607	rs2612091	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs2612091-C	0.3728	2E-11	(ENOSF1)	0.004469	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr18	689436	689437	rs2741181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18p11.32		rs2741181-?	NR	2E-9				NR [~ 8900000] (imputed)	N
590	chr18	712036	712037	rs2612103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs2612103-A	0.4634	9E-10	(ENOSF1)	0.004146	NR unit increase	Illumina [1671387] (imputed)	N
590	chr18	714117	714118	rs2847603	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	NR	rs2847603-T	0.3299	8E-16	(East Asian)	0.5631	[0.43-0.7] unit decrease	Illumina [6200000] (imputed)	N
590	chr18	715255	715255	rs397710234	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs397710234-C	0.4983	1E-9	(ENOSF1)	0.004034	NR unit decrease	Illumina [1671387] (imputed)	N
590	chr18	715713	715714	rs6506469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	18p11.32		rs6506469-C	0.466777	3E-10		0.020949	[0.014-0.027] unit decrease	Illumina [13477770] (imputed)	N
590	chr18	721562	721563	rs8098380	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	YES1	rs8098380-A	0.56	3E-11	(Japanese)	0.5151	[0.36-0.67] unit increase	Illumina [6200000] (imputed)	N
590	chr18	721562	721563	rs8098380	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	YES1	rs8098380-A	0.5572	4E-11	(Japanese)	0.3618	[0.25-0.47] unit increase	Illumina [6200000] (imputed)	N
590	chr18	721562	721563	rs8098380	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	18p11.32	YES1	rs8098380-A	0.5572	7E-7	(Japanese)	0.0689	[0.042-0.096] unit increase	Illumina [6200000] (imputed)	N
590	chr18	721562	721563	rs8098380	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	YES1	rs8098380-A	0.5572	1E-8	(Japanese)	0.2828	[0.19-0.38] unit increase	Illumina [6200000] (imputed)	N
590	chr18	721562	721563	rs8098380	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	18p11.32	YES1	rs8098380-?	NR	5E-11		0.02591	[0.018-0.034] unit decrease	Illumina [6108953] (imputed)	N
590	chr18	721562	721563	rs8098380	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	18p11.32	YES1	rs8098380-?	NR	3E-12		0.02764	[0.02-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
590	chr18	721562	721563	rs8098380	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	18p11.32	YES1	rs8098380-?	NR	7E-10		0.02425	[0.017-0.032] unit decrease	Illumina [6108953] (imputed)	N
590	chr18	722401	722402	rs1060922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	18p11.32		rs1060922-C	0.466715	3E-10		0.0216062	[0.015-0.028] unit decrease	Illumina [13477767] (imputed)	N
590	chr18	723071	723072	rs12961275	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18p11.32		rs12961275-G	NR	5E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
590	chr18	731793	731794	rs6506489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	18p11.32		rs6506489-G	0.46426	3E-8		0.0193902	[0.013-0.026] unit decrease	Illumina [13477770] (imputed)	N
590	chr18	753629	753630	rs8084192	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	NR	rs8084192-T	0.3337	5E-14	(East Asian)	0.3358	[0.25-0.42] unit decrease	Illumina [6200000] (imputed)	N
590	chr18	771046	771047	rs12955644	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18p11.32	YES1	rs12955644-C	0.8239	6E-16		0.2931	[0.22-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
590	chr18	773091	773092	rs7232858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18p11.32		rs7232858-?	NR	6E-8				NR [~ 8900000] (imputed)	N
590	chr18	777281	777282	rs34413141	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18p11.32	YES1	rs34413141-A	0.1816	2E-21		0.3084	[0.24-0.37] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
591	chr18	786568	786569	rs66563455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	18p11.32		rs66563455-C	NR	1E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
591	chr18	786568	786569	rs66563455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18p11.32		rs66563455-C	NR	2E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
591	chr18	786568	786569	rs66563455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	18p11.32		rs66563455-C	NR	8E-13		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
591	chr18	786568	786569	rs66563455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18p11.32		rs66563455-?	NR	2E-17				NR [~ 8900000] (imputed)	N
591	chr18	787846	787847	rs9961091	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	18p11.32	NR	rs9961091-C	0.3323	2E-16	(East Asian)	0.3979	[0.3-0.49] unit decrease	Illumina [6200000] (imputed)	N
591	chr18	794272	794273	rs6506537	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	18p11.32	NR	rs6506537-T	0.6693	4E-9	(East Asian)	0.0714	[0.048-0.095] unit increase	Illumina [6200000] (imputed)	N
591	chr18	807367	807368	rs11664027	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	YES1	rs11664027-?	NR	3E-7				Affymetrix [5486770] (imputed)	N
591	chr18	808321	808322	rs77284350	31794020	Matana A	2019-12-03	J Clin Endocrinol Metab	Genome-wide analysis identifies two susceptibility loci for positive thyroid peroxidase and thyroglobulin antibodies.	Thyroid autoantibody positivity (anti-thyroglobulin (TgAb) and/or anti-thyroid peroxidase  (TPOAb) levels)	619 Croatian ancestry cases, 1,994 Croatian ancestry controls	NA	18p11.32	YES1	rs77284350-T	0.02	2E-8		0.39	[0.25-0.53] unit increase	Illumina [7411206] (imputed)	N
591	chr18	812169	812170	rs111542039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18p11.32	NR	rs111542039-A	NR	4E-9		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
591	chr18	812660	812661	rs73372156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18p11.32		rs73372156-T	NR	2E-8		0.0192	[0.013-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
591	chr18	813553	813554	rs4121508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18p11.32		rs4121508-A	NR	1E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
591	chr18	813553	813554	rs4121508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18p11.32	RP11-672L10.6	rs4121508-A	0.30574	1E-11		0.016651582	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
591	chr18	813553	813554	rs4121508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18p11.32	RP11-672L10.6	rs4121508-A	0.305732	2E-11		0.016505243	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
591	chr18	822872	822873	rs9967110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.32	NR	rs9967110-A	0.320001	2E-12				Affymetrix, Illumina [24588908] (imputed)	N
591	chr18	833871	833872	rs61117663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18p11.32	NR	rs61117663-A	0.749218	2E-11		0.015112	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
591	chr18	835781	835782	rs9959574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18p11.32	RP11-672L10.4	rs9959574-G	0.747828	2E-10		0.016461752	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
591	chr18	839546	839547	rs4798617	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	18p11.32	NR	rs4798617-?	NR	1E-6		4.15	[3.07-5.62]	Illumina [539000] (imputed)	N
591	chr18	843970	843971	rs2846607	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18p11.32	YES1	rs2846607-A	0.1753	6E-6	(EA)			Illumina [4404269] (imputed)	N
591	chr18	849177	849178	rs1291183	23541324	Li X	2013-03-27	J Allergy Clin Immunol	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		18p11.32	YES1	rs1291183-T	0.30	4E-6	(ppFEV1)	0.18	[NR] unit decrease	Illumina [369771]	N
591	chr18	855263	855264	rs1544241	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein level change in low calorie diet obesity intervention	494 European ancestry individuals	NA	18p11.32	NR	rs1544241-?	NR	2E-7	(Caspase-10)	0.09	[0.057-0.123] unit increase	Illumina [4020654] (imputed)	N
591	chr18	864347	864347	rs150747780	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	18p11.32	ADCYAP1	rs150747780-?	NR	4E-9		0.0699	NR L increase	Affymetrix [9390170] (imputed)	N
591	chr18	897090	897091	rs11081417	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	18p11.32	NR	rs11081417-?	NR	2E-6		0.00557	[0.0033-0.0079] unit decrease	Affymetrix [9658292] (imputed)	N
591	chr18	901685	901686	rs2846807	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18p11.32	RP11-672L10.3	rs2846807-T	0.6189	1E-6		0.0365	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr18	901685	901686	rs2846807	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18p11.32	RP11-672L10.3	rs2846807-T	0.6189	1E-6		0.0365	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr18	901956	901957	rs79783687	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18p11.32	RP11-672L10.3	rs79783687-T	0.2502	6E-6		0.0357	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr18	901956	901957	rs79783687	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18p11.32	RP11-672L10.3	rs79783687-T	0.2502	6E-6		0.0357	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
591	chr18	905124	905125	rs1893154	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.32	ADCYAP1	rs1893154-A	0.401	3E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
592	chr18	923473	923474	rs62082666	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	18p11.32		rs62082666-A	NR	8E-6		0.0935	[0.052-0.135] unit decrease	NR [4841651] (imputed)	N
592	chr18	937049	937050	rs1013737	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18p11.32	ADCYAP1	rs1013737-G	0.506779	3E-14		0.0106383	[0.0079-0.0134] unit decrease	Affymetrix [12370749]	N
593	chr18	1051566	1051567	rs12327057	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Midgestational cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	18p11.32	ADCYAP1	rs12327057-C	0.18	1E-8	(sIL2R-alpha)	0.42	[0.28-0.56] unit decrease	Affymetrix [622716]	N
594	chr18	1206983	1206984	rs1826508	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	18p11.32	LOC100130247	rs1826508-C		4E-6		0.08	[0.04-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
595	chr18	1366300	1366301	rs1146075	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs1146075-?	NR	5E-7				Affymetrix [5486770] (imputed)	N
595	chr18	1421020	1421021	rs1226053	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	18p11.32	NR	rs1226053-?	NR	1E-8		0.043	NR L increase	Affymetrix [9390170] (imputed)	N
596	chr18	1443316	1443317	rs12606116	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	18p11.32	intergenic	rs12606116-T	0.19	7E-6	(female)	0.12	[0.069-0.171] unit decrease	Illumina [6380737] (imputed)	N
596	chr18	1471412	1471413	rs1876449	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	18p11.32	ADCYAP1	rs1876449-A	NR	9E-6		4.438	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
597	chr18	1595020	1595021	rs8097348	19727025	De Moor MH	2009-09-02	Med Sci Sports Exerc	Genome-wide association study of exercise behavior in Dutch and American adults.	Leisure-time exercise behaviour	2,622 European ancestry individuals	NA	18p11.32	C18orf2	rs8097348-G	NR	7E-6		1.36	[1.19-1.56]	Affymetrix, Perlegen [~ 1600000] (imputed)	N
598	chr18	1756706	1756707	rs62077041	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	18p11.32	NR	rs62077041-C	0.119	5E-6		0.42	[0.24-0.6] unit decrease	Illumina [9469131] (imputed)	N
598	chr18	1771062	1771063	rs17586705	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	18p11.32	CTDNR2015H3.2	rs17586705-T	0.176	7E-6		1.42	[1.23-1.64]	Illumina [64973696] (imputed)	N
598	chr18	1772502	1772503	rs541861443	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	18p11.32	NR	rs541861443-T	0.418711	7E-6		0.065	[0.038-0.092] unit increase	NR [9260588] (imputed)	N
598	chr18	1807673	1807674	rs9964595	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs9964595-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
598	chr18	1811107	1811108	rs185299109	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Chronic kidney disease (reduced eGFR or end stage renal disease) in type 1 diabetes	4,266 European ancestry cases, 14,838 European ancestry controls	NA	18p11.32	Intergenic	rs185299109-T	0.007	1E-8		20.75	[NR]	Illumina [up to 49000000] (imputed)	N
598	chr18	1816035	1816036	rs2580160	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18p11.32	ADCYAP1, METTL4	rs2580160-A	0.5554	4E-11		1.0287043		Affymetrix [11880941] (imputed)	N
598	chr18	1816035	1816036	rs2580160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18p11.32		rs2580160-?	NR	5E-9				NR [~ 8900000] (imputed)	N
598	chr18	1818384	1818385	rs2345595	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs2345595-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
599	chr18	1839338	1839339	rs9955276	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	18p11.32	intergenic	rs9955276-?	NR	2E-8		0.0194761	[0.013-0.026] unit decrease	Affymetrix [25921788] (imputed)	N
599	chr18	1839338	1839339	rs9955276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18p11.32		rs9955276-?	NR	5E-14				NR [~ 8900000] (imputed)	N
599	chr18	1839563	1839564	rs8097544	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	18p11.32	METTL4	rs8097544-G	0.146	2E-17		0.0326	[0.025-0.04] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
599	chr18	1839563	1839564	rs8097544	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	18p11.32	METTL4	rs8097544-G	0.146	2E-17		0.0326	[0.025-0.04] unit increase	Affymetrix [up to 73355667] (imputed)	N
599	chr18	1839600	1839601	rs8097672	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative sugar intake	175,253 European ancestry individuals	59,454 European ancestry individuals	18p11.32	AP005230.1	rs8097672-?		1E-12		0.03	[0.022-0.038] unit increase	Affymetrix [NR]	N
599	chr18	1839600	1839601	rs8097672	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	18p11.32	NR	rs8097672-T	0.147	2E-9		0.0112319	[0.0076-0.0149] unit increase	NR [~ 9732723] (imputed)	N
599	chr18	1839910	1839911	rs60764613	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18p11.32		rs60764613-G	0.861	2E-11		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
599	chr18	1839910	1839911	rs60764613	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	18p11.32	CTD-2015H3.1	rs60764613-G	0.85	1E-7		1.25	[0.78-1.72] g/day increase	Affymetrix [10353649] (imputed)	N
599	chr18	1839910	1839911	rs60764613	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18p11.32	NR	rs60764613-T	0.147	4E-11		0.0100758	[0.0071-0.0131] unit increase	NR [9732723] (imputed)	N
599	chr18	1840657	1840658	rs7238896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18p11.32		rs7238896-G	NR	7E-13		0.024	[0.018-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
599	chr18	1840657	1840658	rs7238896	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18p11.32	NR	rs7238896-?	NR	7E-15				Affymetrix [~ 8270000] (imputed)	N
599	chr18	1840657	1840658	rs7238896	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18p11.32	NA	rs7238896-A	0.8584	2E-15		0.0218	[0.016-0.027] unit decrease	NR [~ 27400000] (imputed)	N
599	chr18	1840657	1840658	rs7238896	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18p11.32	NA	rs7238896-A	0.8584	2E-15		0.0218	[0.016-0.027] unit decrease	NR [~ 27400000] (imputed)	N
599	chr18	1841424	1841425	rs36013150	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18p11.32	NR	rs36013150-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
599	chr18	1847407	1847408	rs9964229	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	18p11.32	NR	rs9964229-?		1E-8		0.022	[0.014-0.03] unit decrease	Affymetrix [NR]	N
599	chr18	1848628	1848629	rs55804009	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	18p11.32	LINC00470	rs55804009-?	NR	7E-10				Affymetrix [up to 7325140] (imputed)	N
599	chr18	1850770	1850771	rs7226371	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18p11.32	LINC00470	rs7226371-G	0.184	4E-6		0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr18	1850770	1850771	rs7226371	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18p11.32	LINC00470	rs7226371-G	0.158	3E-6	(EA, men)	0.026	[0.015-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr18	1850770	1850771	rs7226371	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18p11.32	LINC00470	rs7226371-G	0.158	2E-6	(EA)	0.021	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr18	1851687	1851688	rs9959497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18p11.32	Intergenic	rs9959497-G	0.8438	5E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
599	chr18	1856271	1856272	rs2083323	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18p11.32	METTL4	rs2083323-G	0.822294	7E-9		0.0104121	[0.0069-0.0139] unit decrease	Affymetrix [12370749]	N
599	chr18	1872316	1872317	rs1992269	26049409	Hirano A	2015-06-05	Psychiatr Genet	A genome-wide association study of late-onset Alzheimer's disease in a Japanese population.	Alzheimer's disease (late onset)	489 Japanese ancestry APOE-?4 noncarrier cases, 6,463 Japanese ancestry APOE-?4 noncarrier controls, 323 Japanese ancestry APOE-?4 carrier cases, 1,484 Japanese ancestry APOE-?4 carrier controls, 4 Japanese ancestry cases, 45 Japanese ancestry controls	528 Japanese ancestry APOE-?4 noncarrier cases, 5,824 Japanese ancestry APOE-?4 noncarrier controls, 480 Japanese ancestry APOE-?4 carrier cases, 1,364 Japanese ancestry APOE-?4 carrier controls, 3 Japanese ancestry cases, 24 Japanese ancestry controls	18p11.32	intergenic	rs1992269-A	0.076	1E-6		1.66	[1.35-2.03]	Illumina [561143]	N
599	chr18	1883793	1883794	rs313021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18p11.32		rs313021-?	NR	1E-8				NR [~ 8900000] (imputed)	N
599	chr18	1931565	1931566	rs8091041	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	18p11.32	NR	rs8091041-G	0.1776	1E-6		0.086394	NR unit decrease	Illumina [560351]	N
599	chr18	1931584	1931585	rs16942264	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs16942264-T	0.0122	2E-9	(FERMT2)	0.07305	NR unit increase	Illumina [1671387] (imputed)	N
599	chr18	1952126	1952127	rs28496996	26888256	Hernandez W	2016-02-17	Blood	Novel genetic predictors of venous thromboembolism risk in African Americans.	Venous thromboembolism	146 African American cases, 432 African American controls	94 African American cases, 65 African American controls	18p11.32	intergenic	rs28496996-G	0.08	6E-8		2.44	[1.6-3.6]	Illumina [10690342] (imputed)	N
600	chr18	1971192	1971193	rs7239865	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	18p11.32	NR	rs7239865-?		6E-6		0.08	unit increase	Illumina [1211988] (imputed)	N
600	chr18	1977712	1977713	rs6505987	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs6505987-?	NR	3E-8				Affymetrix [5486770] (imputed)	N
600	chr18	1984420	1984421	rs56728521	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	18p11.32	METTL4	rs56728521-A	0.92	7E-6	(Right HG area)	8.65	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
600	chr18	1998968	1998969	rs28473665	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.32	NR	rs28473665-C	0.0122	1E-8	(FERMT2)	0.08038	NR unit increase	Illumina [1671387] (imputed)	N
600	chr18	2050380	2050381	rs2186849	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	18p11.32	LINC00470, METTL4	rs2186849-G	0.47	3E-6		1.33		Illumina [8974355] (imputed)	N
601	chr18	2146394	2146395	rs685058	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	18p11.32		rs685058-A	0.115376	7E-7		0.0144277	[0.0087-0.0202] unit increase	Illumina [13900000] (imputed)	N
601	chr18	2164154	2164155	rs11872654	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	18p11.32	intergenic	rs11872654-?	NR	4E-6				Illumina [501584]	N
601	chr18	2176438	2176439	rs1784848	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18p11.32	RP11-161I6.2	rs1784848-C	NR	9E-7	(sleep duration, weekdays)	0.5621	[0.34-0.79] unit increase	Affymetrix [7141204] (imputed)	N
601	chr18	2187488	2187489	rs11877976	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.32	NDC80	rs11877976-?	NR	7E-6	(PC 32:2)	0.29650474	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
601	chr18	2187488	2187489	rs11877976	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.32	NDC80	rs11877976-?	NR	4E-6	(PC 34:3)	0.30183122	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
601	chr18	2191746	2191747	rs111484061	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18p11.32	RP11-161I6.2	rs111484061-A	0.0016	8E-6		0.9739	[0.55-1.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
602	chr18	2280387	2280388	rs631644	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	18p11.32	LINC00470, METTL4	rs631644-A	0.5959977320000001	3E-6		1.0671345	[1.04-1.1]	Illumina [10439017] (imputed)	N
602	chr18	2297036	2297037	rs11875537	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (cerebrospinal fluid)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	18p11.32	METTL4	rs11875537-T	NR	8E-7		4.35	percent increase	Affymetrix [8762422] (imputed)	N
602	chr18	2325507	2325508	rs151169667	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	18p11.32	NR	rs151169667-C	0.0123	7E-6		2.4295433	[2.04-2.82]	Illumina [8567708] (imputed)	N
602	chr18	2334692	2334693	rs12953784	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	18p11.32	METTL4, NDC80	rs12953784-A	0.13	3E-6		0.37	[0.21-0.53] unit increase	Illumina [at least 4710000] (imputed)	N
603	chr18	2400627	2400628	rs3848511	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18p11.32	METTL4	rs3848511-C	0.597249636579447	4E-8	(G_Akkermansia_RNT)	0.152086	[0.098-0.207] unit increase	Illumina [7711310] (imputed)	N
603	chr18	2427954	2427955	rs56039004	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	18p11.32	NR	rs56039004-A	0.0703749	8E-7		1.146	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
603	chr18	2452176	2452177	rs3914785	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs3914785-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
604	chr18	2498053	2498054	rs1879352	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	18p11.32	intergenic	rs1879352-C	0.16	9E-6		1.53	[1.20-1.80]	Affymetrix [307944]	N
604	chr18	2507424	2507425	rs4797996	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18p11.32	NR	rs4797996-?	NR	2E-6	(AA)	0.3058	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
604	chr18	2614474	2614475	rs182046301	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs182046301-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
605	chr18	2643557	2643558	rs9964540	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	18p11.32	NR	rs9964540-A	0.00879648	3E-6		1.075	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
605	chr18	2656892	2656893	rs111917063	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18p11.32	NR	rs111917063-C	0.978849	7E-12		0.019734	[0.014-0.026] unit increase	Affymetrix [16582909] (imputed)	N
605	chr18	2656892	2656893	rs111917063	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	18p11.32	NR	rs111917063-C	0.978989	2E-8		0.0203879	[0.012-0.028] unit increase	Affymetrix [16582621] (imputed)	N
605	chr18	2656892	2656893	rs111917063	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18p11.32	NR	rs111917063-C	0.978849	2E-7		0.0158632	[0.0094-0.0223] unit increase	Affymetrix [16582965] (imputed)	N
605	chr18	2656892	2656893	rs111917063	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	18p11.32	NR	rs111917063-C	0.978989	1E-6		0.01878	[0.01-0.027] unit increase	Affymetrix [16582614] (imputed)	N
605	chr18	2656988	2656989	rs57126421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18p11.32		rs57126421-G	NR	7E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
605	chr18	2700153	2700154	rs553221313	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	18p11.32	SMCHD1, RP11-703M24.5	rs553221313-T	0.9986	4E-6		1.2329	[0.71-1.76] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
605	chr18	2710380	2710380	rs201024040	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	18p11.32	NR	rs201024040-AT	0.028	5E-7		1.14	[0.69-1.59] unit increase	Illumina [9469131] (imputed)	N
605	chr18	2735458	2735459	rs685958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18p11.32	Intergenic	rs685958-A	0.4401	5E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
605	chr18	2739732	2739733	rs11872184	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	18p11.32	SMCHD1	rs11872184-?		4E-6	(EA, Inherited)	4.08	[2.15-7.74]	Illumina [2421290] (imputed)	N
605	chr18	2750855	2750856	rs2347808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.32		rs2347808-A	NR	2E-13		0.01	[0.0073-0.0127] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
605	chr18	2750855	2750856	rs2347808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.32		rs2347808-?	NR	1E-17				NR [~ 8900000] (imputed)	N
606	chr18	2823779	2823780	rs138536305	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	18p11.32	NR	rs138536305-A	0.028	2E-6		1.07	[0.62-1.52] unit increase	Illumina [9469131] (imputed)	N
606	chr18	2825417	2825418	rs673783	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	18p11.32	intergenic	rs673783-G	0.31	4E-6		2.49	[1.69-3.67]	NR [~ 38000000] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	4E-37		0.0366917	[0.031-0.042] unit decrease	Affymetrix [319769] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	7E-38		0.0370906	[0.031-0.043] unit decrease	Affymetrix [319769] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	6E-21		0.0272799	[0.022-0.033] unit decrease	Affymetrix [321114] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	1E-12		0.0212686	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	4E-10		0.0180495	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
606	chr18	2846498	2846499	rs3810068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs3810068-C	NR	5E-24		0.0294405	[0.024-0.035] unit decrease	Affymetrix [321169] (imputed)	N
606	chr18	2846498	2846499	rs3810068	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	18p11.32	NR	rs3810068-T	0.61	5E-31		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
606	chr18	2846498	2846499	rs3810068	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	18p11.32	NR	rs3810068-T	0.61	5E-8				Affymetrix [2446094] (imputed)	N
606	chr18	2846811	2846812	rs11664106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	18p11.32		rs11664106-T	NR	2E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
606	chr18	2846811	2846812	rs11664106	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	18p11.32		rs11664106-T	0.37	1E-9		0.013	mmol/L decrease	NR [NR] (imputed)	N
606	chr18	2846811	2846812	rs11664106	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	18p11.32		rs11664106-T	0.37	2E-9		0.012	nmol/L increase	NR [NR] (imputed)	N
606	chr18	2846811	2846812	rs11664106	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18p11.32		rs11664106-T	0.37	9E-22				NR [NR] (imputed)	N
606	chr18	2846811	2846812	rs11664106	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18p11.32		rs11664106-T	0.37	5E-9		0.009	% increase	NR [NR] (imputed)	N
606	chr18	2846811	2846812	rs11664106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	18p11.32	NR	rs11664106-T	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
606	chr18	2846811	2846812	rs11664106	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18p11.32	EMILIN2	rs11664106-A	0.625896	2E-9		0.0126383	[0.0085-0.0168] unit increase	Affymetrix [NR] (imputed)	N
606	chr18	2846811	2846812	rs11664106	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18p11.32	NR	rs11664106-T	0.37302500000000005	7E-17		0.0074161	[0.0057-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
606	chr18	2846811	2846812	rs11664106	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	18p11.32	NR	rs11664106-T	0.372641	4E-10		0.00836172	[0.0058-0.0109] unit increase	Affymetrix [16585854] (imputed)	N
606	chr18	2846811	2846812	rs11664106	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18p11.32	NR	rs11664106-T	0.37302500000000005	5E-10		0.00612397	[0.0042-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
606	chr18	2846811	2846812	rs11664106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18p11.32	NR	rs11664106-?	NR	5E-41				Affymetrix [~ 8270000] (imputed)	N
606	chr18	2846811	2846812	rs11664106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18p11.32	NR	rs11664106-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
606	chr18	2846811	2846812	rs11664106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18p11.32		rs11664106-?	NR	4E-37				NR [~ 8900000] (imputed)	N
606	chr18	2847360	2847361	rs112881773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18p11.32	NR	rs112881773-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
606	chr18	2850547	2850548	rs695115	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18p11.32	NR	rs695115-T	0.2966	7E-9		0.0126	[0.0083-0.0169] unit increase	NR [~ 27400000] (imputed)	N
606	chr18	2855022	2855023	rs4798035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18p11.32	EMILIN2	rs4798035-A	NR	5E-8		0.0175381	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
606	chr18	2855160	2855161	rs76724145	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18p11.32	NR	rs76724145-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
606	chr18	2865504	2865505	rs28877609	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.32	NR	rs28877609-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
606	chr18	2876009	2876010	rs113573417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18p11.32		rs113573417-C	0.871522	3E-8		0.0354631	[0.023-0.048] unit decrease	NR [11722792] (imputed)	N
607	chr18	2899323	2899324	rs16944003	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	18p11.32	NR	rs16944003-?	NR	4E-17		8.419	NR z score increase	Illumina [at least 830937] (imputed)	N
607	chr18	2946290	2946291	rs643507	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	18p11.31	LPIN2	rs643507-C	0.01	8E-9	(adult)			Illumina [up to 536451]	N
607	chr18	2948028	2948029	rs10460009	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	18p11.31	LPIN2	rs10460009-C	0.60	9E-6	(Malay)	1.35	[1.18-1.54]	Illumina [~ 2000000] (imputed)	N
607	chr18	2967844	2967845	rs8087073	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	NR	rs8087073-?	NR	1E-9				Affymetrix [5486770] (imputed)	N
607	chr18	2981397	2981398	rs681869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.31	NR	rs681869-C	0.302398	2E-15				Affymetrix, Illumina [22063850] (imputed)	N
607	chr18	2981397	2981398	rs681869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18p11.31	NR	rs681869-C	0.294799	1E-17		0.017643	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
607	chr18	2981397	2981398	rs681869	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18p11.31	LPIN2	rs681869-C	0.295848	2E-14		0.0164637	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
607	chr18	2981397	2981398	rs681869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18p11.31		rs681869-?	NR	1E-12				NR [~ 8900000] (imputed)	N
607	chr18	2987037	2987038	rs650543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.31	LPIN2	rs650543-T	0.723243	2E-15		0.019976836	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
607	chr18	2995194	2995195	rs35555695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18p11.31	LPIN2	rs35555695-G	0.705158	1E-16		0.02023141	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
607	chr18	3000628	3000629	rs35179352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18p11.31	LPIN2	rs35179352-T	0.177299	1E-9		0.017870499	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
608	chr18	3041396	3041397	rs78192384	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	18p11.31	NR	rs78192384-A	0.03	7E-6		0.27	[0.15-0.39] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
608	chr18	3043515	3043516	rs4528660	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	18p11.31	MYOM1, LPIN2, LOC727896	rs4528660-T	0.91	9E-6		0.073	[0.04-0.106] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
608	chr18	3107403	3107404	rs141348977	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18p11.31	MYOM1, RNU7-25P, LPIN2, MYL12A	rs141348977-T	NR	9E-6	(resting duration, weekdays)	0.4693	[0.26-0.68] unit increase	Affymetrix [7141204] (imputed)	N
609	chr18	3199306	3199307	rs4797102	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.31	NR	rs4797102-?	NR	3E-14				Affymetrix [NR]	N
609	chr18	3220755	3220755	rs138549714	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	18p11.31	MYOM1	rs138549714-G	NR	1E-6		2.05	percent decrease	Affymetrix [8762422] (imputed)	N
609	chr18	3255300	3255301	rs1662342	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	18p11.31	MYL12A	rs1662342-A	0.16	5E-8		0.47	[0.29-0.65] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
609	chr18	3255300	3255301	rs1662342	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	18p11.31	MYL12A	rs1662342-A	0.14	3E-7	(European)	0.53	[0.51-0.55] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
610	chr18	3325608	3325609	rs79765414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18p11.31	Intergenic	rs79765414-A	0.999	3E-6	(AA)	0.418	unit increase	Illumina [NR] (imputed)	N
610	chr18	3328745	3328746	rs1623523	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	18p11.31	MRLC2	rs1623523-?	NR	3E-6				Affymetrix [NR]	N
610	chr18	3394448	3394449	rs6506122	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	18p11.31	TGIF1, MYL12B	rs6506122-C	NR	5E-6	(LJC)	1.82	[1.06-2.58] unit increase	Illumina [586062]	N
611	chr18	3415830	3415831	rs12457997	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	18p11.31	TGIF1	rs12457997-T	0.67	5E-6	(Age 20-60 years)	0.1663	[0.096-0.237] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
611	chr18	3439155	3439156	rs4798095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18p11.31	TGIF1	rs4798095-C	0.665805	5E-9		0.0140326	[0.0097-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
611	chr18	3441166	3441167	rs8087619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18p11.31	TGIF1	rs8087619-G	0.662865	7E-9		0.0137465345	[0.0091-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
611	chr18	3441166	3441167	rs8087619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.31	TGIF1	rs8087619-G	0.662976	1E-13		0.017695628	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
611	chr18	3441166	3441167	rs8087619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18p11.31	TGIF1	rs8087619-G	0.662901	9E-10		0.014359277	[0.0098-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
611	chr18	3442283	3442283	rs5822760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18p11.31	NR	rs5822760-I	0.658403	5E-12		0.014656	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
611	chr18	3443118	3443119	rs238544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.31	NR	rs238544-T	0.705215	3E-12				Affymetrix, Illumina [24246363] (imputed)	N
611	chr18	3443118	3443119	rs238544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.31	NR	rs238544-T	0.707991	3E-11				Affymetrix, Illumina [20825802] (imputed)	N
611	chr18	3448754	3448755	rs238136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.31	NR	rs238136-G	0.253745	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
611	chr18	3448754	3448755	rs238136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18p11.31	NR	rs238136-G	0.250043	2E-11		0.014997	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
611	chr18	3448978	3448979	rs238135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18p11.31		rs238135-C	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
611	chr18	3448978	3448979	rs238135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18p11.31	TGIF1	rs238135-C	0.28991	2E-15		0.019713653	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr18	3448978	3448979	rs238135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18p11.31	TGIF1	rs238135-C	0.289881	1E-10		0.01606426	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr18	3457605	3457606	rs4468717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18p11.31		rs4468717-T	NR	2E-8		0.0214	[0.014-0.029] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
611	chr18	3457605	3457606	rs4468717	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18p11.31	TGIF1	rs4468717-C	0.922229	3E-12		0.00297186	[0.0021-0.0038] unit increase	Affymetrix [13995440] (imputed)	N
611	chr18	3457605	3457606	rs4468717	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	18p11.31		rs4468717-C	0.921806	2E-8		0.0962716	[0.063-0.13] decrease	Affymetrix [11014269] (imputed)	N
611	chr18	3457605	3457606	rs4468717	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18p11.31		rs4468717-T	0.0805	9E-12		0.2705317	[0.19-0.35] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
611	chr18	3457605	3457606	rs4468717	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18p11.31		rs4468717-T	0.0804	8E-9		0.16917486	[0.11-0.23] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
611	chr18	3457605	3457606	rs4468717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18p11.31	TGIF1	rs4468717-T	0.077456	1E-10		0.026692709	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr18	3457605	3457606	rs4468717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.31	NR	rs4468717-T	0.0752006	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
611	chr18	3457605	3457606	rs4468717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18p11.31	NR	rs4468717-T	0.077663	5E-12		0.024976	[0.018-0.032] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
611	chr18	3465131	3465132	rs58882377	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	NR	rs58882377-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
611	chr18	3482785	3482786	rs238142	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.31	TGIF1	rs238142-?	NR	2E-6	(citrulline)	0.3153002	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
611	chr18	3512215	3512216	rs17724172	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	18p11.31	DLGAP1	rs17724172-C	NR	9E-6	(Dichotomous variable)	2.04	[1.49-2.78]	Affymetrix, Illumina [~ 2500000] (imputed)	N
611	chr18	3522005	3522006	rs8083633	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	18p11.31	DLGAP1	rs8083633-T	NR	1E-6		0.154	[0.091-0.217] unit increase	Illumina [628922]	N
612	chr18	3558077	3558078	rs588682	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	18p11.31	DLGAP1	rs588682-G	0.09	3E-8	(Ala)	0.38	[0.24-0.52] unit increase	Illumina [1288202] (imputed)	N
612	chr18	3608685	3608686	rs4065377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.31	DLGAP1	rs4065377-C	0.348426	8E-11		0.015665181	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr18	3609637	3609638	rs4798105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18p11.31	DLGAP1	rs4798105-T	0.699037	2E-9		0.015561044	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr18	3610178	3610179	rs12956729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18p11.31		rs12956729-C	NR	3E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
612	chr18	3610178	3610179	rs12956729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18p11.31	DLGAP1	rs12956729-C	0.356341	4E-10		0.0157238	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr18	3610178	3610179	rs12956729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18p11.31	NR	rs12956729-C	0.353897	5E-13		0.014612	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
612	chr18	3640785	3640786	rs62083214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18p11.31		rs62083214-T	NR	5E-12		0.0233	[0.017-0.03] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
612	chr18	3640785	3640786	rs62083214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18p11.31	NR	rs62083214-T	NR	1E-11		0.0237	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr18	3642124	3642125	rs73383014	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	18p11.31	DLGAP1	rs73383014-A	0.0018	2E-6		0.8552	[0.5-1.21] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr18	3642561	3642562	rs16945149	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	18p11.31	DLGAP1	rs16945149-T	0.9984	8E-6		0.7393	[0.41-1.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr18	3652507	3652507	rs113196269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18p11.31	DLGAP1	rs113196269-AT	0.240371	5E-11		0.017202541	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
612	chr18	3652507	3652507	rs113196269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.31	DLGAP1	rs113196269-AT	0.240387	1E-10		0.017001374	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
612	chr18	3668915	3668916	rs141372016	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	18p11.31	DLGAP1	rs141372016-A	0.0021	2E-6		0.8065	[0.47-1.14] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr18	3668915	3668916	rs141372016	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	18p11.31	DLGAP1	rs141372016-A	0.002	6E-6		0.737	[0.42-1.06] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
613	chr18	3718338	3718339	rs139244548	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	18p11.31	NR	rs139244548-G	0.008482	5E-6		0.7326	[0.42-1.05] unit decrease	Illumina [10677593] (imputed)	N
614	chr18	3813463	3813464	rs11873906	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	18p11.31		rs11873906-G	NR	4E-8		0.01988877	[0.013-0.027] years increase	NR [7400000] (imputed)	N
614	chr18	3813463	3813464	rs11873906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.31		rs11873906-?	NR	3E-10				NR [~ 8900000] (imputed)	N
614	chr18	3814147	3814148	rs3786431	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.31	NR	rs3786431-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
614	chr18	3816054	3816054	rs35212912	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	18p11.31	DLGAP1	rs35212912-?	NR	5E-8		0.03	[0.040-0.019] unit decrease	Illumina [12039492]	N
614	chr18	3817133	3817134	rs12607903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18p11.31		rs12607903-?	NR	9E-27				NR [~ 8900000] (imputed)	N
614	chr18	3817133	3817134	rs12607903	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	18p11.31	DLGAP1	rs12607903-C	0.3	5E-11		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
614	chr18	3818841	3818842	rs28421540	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	18p11.31	NR	rs28421540-A	0.714548	3E-14		0.0108359	[0.008-0.0136] unit increase	Affymetrix [16578495] (imputed)	N
614	chr18	3818841	3818842	rs28421540	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18p11.31	NR	rs28421540-A	0.713516	2E-24		0.030872	[0.025-0.037] unit increase	Affymetrix [16580851] (imputed)	N
614	chr18	3822870	3822871	rs3985697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	18p11.31		rs3985697-?	NR	9E-11				NR [~ 8900000] (imputed)	N
614	chr18	3872265	3872266	rs9948278	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.31	FLJ35776	rs9948278-?	NR	5E-6	(LPC 20:3)	0.24616224	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
614	chr18	3879738	3879739	rs76205593	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	DLGAP1	rs76205593-C	0.07	7E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
615	chr18	3938438	3938439	rs1442386	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	18p11.31		rs1442386-A	0.484	4E-8		0.85	[0.81-0.9]	Illumina [7199488] (imputed)	N
615	chr18	3942901	3942902	rs11876749	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	18p11.31	DLGAP1	rs11876749-C	0.47	2E-8	(recessive)	0.14	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
615	chr18	3953219	3953220	rs7239297	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	18p11.31	DLGAP1	rs7239297-G	0.49	6E-7	(dominant)	0.12	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
615	chr18	3953264	3953265	rs73376544	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18p11.31	NR	rs73376544-T	0.158	3E-8		0.00826911	[0.0054-0.0112] unit decrease	NR [9732723] (imputed)	N
615	chr18	3970123	3970124	rs17574271	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	18p11.31	DLGAP1	rs17574271-C	0.08844	6E-9		0.1727	[NR] unit increase	Illumina [658884]	N
615	chr18	3986255	3986256	rs28488636	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	18p11.31	DLGAP1	rs28488636-T	0.387194	3E-6		1.205	[1.114 - 1.304]	Illumina [5397657] (imputed)	N
615	chr18	4002681	4002682	rs60310371	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	18p11.31	NR	rs60310371-A	0.1398	1E-6		0.2122	[0.13-0.3] unit decrease	Illumina [10677593] (imputed)	N
616	chr18	4114528	4114529	rs146298733	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	18p11.31	DLGAP1	rs146298733-?	NR	3E-7				Affymetrix, Illumina [15642250] (imputed)	N
616	chr18	4165117	4165118	rs75212263	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18p11.31	DLGAP1	rs75212263-G	0.0467324963255259	3E-6	(G_Coprococcus_HB)	0.83118	[0.48-1.18] unit decrease	Illumina [7711310] (imputed)	N
617	chr18	4223139	4223140	rs513008	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.31	NR	rs513008-?	NR	8E-6				Affymetrix [NR]	N
617	chr18	4247230	4247231	rs12455349	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	18p11.31	DLGAP1	rs12455349-?	NR	9E-6				Illumina [659211]	N
617	chr18	4267775	4267776	rs12456597	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	18p11.31	DLGAP1-AS5, DLGAP1	rs12456597-A	0.8977	6E-6		0.0612	[0.035-0.088] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
617	chr18	4316865	4316866	rs610269	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	18p11.31		rs610269-?	NR	8E-6		1.6393442	[1.32-2.04]	Illumina [6778521] (imputed)	N
618	chr18	4395499	4395500	rs146408330	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	18p11.31	NR	rs146408330-?		7E-7	(PCB194)	1.53	[0.92-2.14] unit decrease	Illumina [8736858] (imputed)	N
618	chr18	4414794	4414795	rs56385737	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	18p11.31	DLGAP1	rs56385737-?		3E-7	(BB-153)	0.44	[0.28-0.6] unit increase	Affymetrix [629686]	N
619	chr18	4539084	4539085	rs7228133	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	18p11.31	LOC284215	rs7228133-C	0.686	2E-6	(Recessive model)	1.255	[1.034-1.522]	Illumina [733202]	N
619	chr18	4541335	4541336	rs138710042	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	18p11.31		rs138710042-G	0.978337	5E-6		0.0375225	[0.019-0.056] unit decrease	Illumina [7666802] (imputed)	N
619	chr18	4563164	4563165	rs1072880	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18p11.31	NR	rs1072880-T	0.305906592593885	5E-8		0.005434223	[0.0035-0.0074] unit decrease	NR [NR]	N
620	chr18	4689556	4689557	rs34939875	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18p11.31	NR	rs34939875-A	0.257	6E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
620	chr18	4707813	4707814	rs12051987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18p11.31	Intergenic	rs12051987-T	0.8192	9E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
621	chr18	4721358	4721359	rs1557305	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	18p11.31	DLGAP1	rs1557305-C	0.628	5E-6	(OCPD)	1.11	[1.06-1.16]	Illumina [283744]	N
621	chr18	4772806	4772807	rs8089250	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	18p11.31	Intergenic	rs8089250-?	NR	2E-6		2.72	[1.78-4.17]	Illumina [498081]	N
621	chr18	4773109	4773110	rs7237848	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	18p11.31	intergenic	rs7237848-T	0.33	2E-7	(lymphocyte count)	0.067	[0.04-0.10] unit increase	Illumina [2178645] (imputed)	N
621	chr18	4845026	4845027	rs9958640	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18p11.31	NR	rs9958640-G	0.6007	2E-8		0.0236	[0.015-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
622	chr18	4856889	4856890	rs62082533	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	18p11.31	intergenic	rs62082533-T	NR	8E-6		1.28381	[1.15038-1.43273]	Illumina [5842835] (imputed)	N
622	chr18	4925255	4925256	rs9950268	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		LINC01892	rs9950268-G	0.42	4E-6				Illumina [1679420] (imputed)	N
622	chr18	4980407	4980408	rs8099121	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18p11.31	NR	rs8099121-A	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
623	chr18	5030022	5030023	rs6506284	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	18p11.31	C18orf42	rs6506284-?	NR	3E-6		0.32	[0.18-0.46] unit increase	Illumina [1075436] (imputed)	N
623	chr18	5099427	5099428	rs60475118	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	18p11.31		rs60475118-?	NR	1E-5		0.23	[0.13-0.33] unit decrease	Illumina [5082878] (imputed)	N
624	chr18	5170378	5170379	rs9303973	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.31	NR	rs9303973-?	NR	6E-15				Affymetrix [NR]	N
624	chr18	5186018	5186019	rs62082401	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18p11.31		rs62082401-?	NR	6E-14				NR [~ 8900000] (imputed)	N
624	chr18	5186163	5186164	rs974552	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18p11.31		rs974552-A	0.8085	1E-15		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
624	chr18	5186565	5186566	rs62082402	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18p11.31	C18orf42	rs62082402-T	0.1936	7E-19		1.048		Affymetrix [11880941] (imputed)	N
624	chr18	5186565	5186566	rs62082402	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18p11.31	C18orf42	rs62082402-T	0.1936	7E-19		1.0512711		Affymetrix [11880941] (imputed)	N
624	chr18	5196980	5196981	rs292285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.31		rs292285-A	NR	5E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
624	chr18	5196980	5196981	rs292285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.31		rs292285-?	NR	1E-10				NR [~ 8900000] (imputed)	N
624	chr18	5197856	5197857	rs80164227	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	18p11.31	C18orf42	rs80164227-A	0.97	9E-6		0.43	[0.23-0.63] unit decrease	Illumina [14638245] (imputed)	N
624	chr18	5224408	5224409	rs12454213	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.31	NR	rs12454213-?	NR	9E-6				Affymetrix [NR]	N
624	chr18	5231134	5231135	rs142212026	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-ankle pulse wave velocity)	6,734 European ancestry individuals	NA	18p11.31	LINC00667	rs142212026-A	0.02	6E-7		0.04	[0.024-0.056] unit decrease	Affymetrix [11342744] (imputed)	N
625	chr18	5258178	5258179	rs7227931	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18p11.31	NR	rs7227931-?	NR	4E-6		4.598	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
625	chr18	5311891	5311892	rs589398	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	18p11.31	ZBTB14, EPB41L3	rs589398-C	0.03	3E-7		0.1942	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
625	chr18	5372693	5372694	rs148846406	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	18p11.31	NR	rs148846406-?		7E-6		1.8181818	[NR]	Illumina [NR] (imputed)	N
626	chr18	5389831	5389832	rs9958650	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	7,338 European, African American, South Asian and Hispanic ancestry cases, 225,258 European, African American, South Asian and Hispanic ancestry controls	NA	18p11.31	ZBTB14, EPB41L3	rs9958650-G	0.1	2E-8		1.19	[1.13-1.25]	Illumina [6922875] (imputed)	N
626	chr18	5389831	5389832	rs9958650	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	6,030 European ancestry cases, 248,929 European ancestry controls	NA	18p11.31	ZBTB14, EPB41L3	rs9958650-G	0.1	1E-6		1.18	[1.12-1.24]	Illumina [6932927] (imputed)	N
626	chr18	5455093	5455094	rs192647176	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	18p11.31	EPB41L3	rs192647176-C	0.002	7E-6		0.0929	NR unit increase	Affymetrix, Illumina [11901698] (imputed)	N
626	chr18	5455093	5455094	rs192647176	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	18p11.31	EPB41L3	rs192647176-C	0.002	3E-7	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
626	chr18	5472020	5472021	rs9952940	30099483	Hwangbo Y	2018-08-06	J Clin Endocrinol Metab	Genome-wide Association Study Reveals Distinct Genetic Susceptibility of Thyroid Nodules from Thyroid Cancer.	Thyroid nodules	811 Korean ancestry cases, 691 Korean ancestry controls	1,981 Korean ancestry cases, 3,100 Korean ancestry controls	18p11.31	EPB41L3	rs9952940-T	0.76	5E-6		1.23	[1.14-1.37]	Affymetrix [3996558] (imputed)	N
626	chr18	5491081	5491082	rs74609852	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	18p11.31		rs74609852-?	NR	1E-5		0.863168	[0.8-0.93]	NR [682398]	N
626	chr18	5503376	5503377	rs73379591	33993232	Carmona EG	2021-05-16	Rheumatology (Oxford)	Identification of a shared genetic risk locus for Kawasaki disease and IgA vasculitis by a cross-phenotype meta-analysis.	Kawasaki disease or immunoglobulin A vasculitis (pleiotropy)	402 European ancestry Kawasaki disease cases, 215 European ancestry IgAV cases, 7,538 European ancestry controls	186 East Asian ancestry Kawasaki disease cases, 600 East Asian ancestry controls, 384 IgAV European or unknown ancestry cases, 3,126 European or unknown ancestry controls	18p11.31		rs73379591-C	NR	7E-8				Illumina [5690841] (imputed)	N
627	chr18	5529674	5529675	rs1539809	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	18p11.31	EPB41L3	rs1539809-T	0.04	2E-6	(Age 17)	0.33	[0.19-0.47] unit increase	Illumina [2293137] (imputed)	N
627	chr18	5545584	5545585	rs118059080	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.31	NR	rs118059080-C	0.01742	3E-8	(OGDH)	0.2792	NR unit increase	Illumina [1671387] (imputed)	N
627	chr18	5575353	5575354	rs940131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18p11.31		rs940131-C	NR	2E-18		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
627	chr18	5578981	5578982	rs11664536	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	18p11.31	EPB41L3	rs11664536-?	NR	6E-6	(EA)	3.19	[1.82-4.56] unit decrease	Affymetrix, Illumina [2033301]	N
627	chr18	5585157	5585158	rs1719934	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18p11.31	EPB41L3	rs1719934-A	0.5752	2E-25		0.0026	[0.002-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
627	chr18	5585157	5585158	rs1719934	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	18p11.31	EPB41L3	rs1719934-A	0.5366	4E-23		0.0028	[0.0022-0.0034] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
627	chr18	5585157	5585158	rs1719934	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	18p11.31	EPB41L3	rs1719934-G	0.42	4E-6		1.0378827	[1.02-1.05]	Affymetrix, Illumina [9585923] (imputed)	N
627	chr18	5585157	5585158	rs1719934	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	18p11.31	EPB41L3	rs1719934-G	0.3174	8E-14		7.465	NR z score decrease	Illumina [26237160] (imputed)	N
627	chr18	5585157	5585158	rs1719934	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18p11.31	EPB41L3	rs1719934-G	0.329	2E-11		0.344	[0.16-0.53] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
627	chr18	5593170	5593171	rs9962915	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		18p11.31	EPB41L3	rs9962915-T	0.48	7E-9		0.0055	[0.0035-0.0075] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
627	chr18	5596821	5596822	rs1719983	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	18p11.31	EPB41L3	rs1719983-T	0.4689	5E-12	(EA)	0.0024	[0.0016-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
627	chr18	5597206	5597207	rs141727959	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18p11.31	EPB41L3	rs141727959-A	0.0231581865867554	9E-6		0.0086002	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
627	chr18	5598553	5598554	rs1719985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18p11.31		rs1719985-T	NR	2E-10		0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
627	chr18	5601402	5601403	rs1785418	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	18p11.31	EPB41L3	rs1785418-A	0.429	5E-14		0.0025	[0.0019-0.0031] unit decrease	Affymetrix [NR] (imputed)	N
627	chr18	5603309	5603310	rs1719980	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	18p11.31	NR	rs1719980-A	0.44	9E-9		0.0108	[0.007-0.0146] unit decrease	NR [NR]	N
628	chr18	5762617	5762618	rs11662748	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	LOC645355	rs11662748-A	0.114	1E-6	(Sleep duration )	0.03	[NR] min/d increase	Illumina [899892]	N
629	chr18	5836381	5836382	rs8088340	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	18p11.31	RP11-945C19.1	rs8088340-C	0.01748	4E-8		4.684	[4.08-5.29]	Illumina [281811]	N
629	chr18	5856603	5856604	rs56929051	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	18p11.31	NR	rs56929051-?		3E-6		15.21	[4.87-47.46]	Illumina [NR] (imputed)	N
629	chr18	5857090	5857091	rs11662763	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	18p11.31	L3MBTL4	rs11662763-?	0.85	5E-6		1.56	[1.30-1.89]	Illumina [2057134] (imputed)	N
629	chr18	5858360	5858361	rs74253876	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ CD14dim Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	18p11.31		rs74253876-T	0.21789	1E-8		0.2252	[0.15-0.3] unit decrease	Illumina [17203588] (imputed)	N
629	chr18	5871419	5871420	rs6506343	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18p11.31		rs6506343-C	0.487	2E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
629	chr18	5872471	5872472	rs34342129	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18p11.31	NR	rs34342129-C	0.509	2E-8		0.014281006	[0.0093-0.0193] unit decrease	NR [~ 10000000] (imputed)	N
629	chr18	5888040	5888041	rs1940597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18p11.31	Intergenic	rs1940597-A	0.3884	7E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
629	chr18	5889764	5889765	rs7190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18p11.31	Intergenic	rs7190-A	0.3619	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
629	chr18	5889764	5889765	rs7190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18p11.31	Intergenic	rs7190-A	0.3616	5E-14	(MTAG)	0.013	[0.0097-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
629	chr18	5889764	5889765	rs7190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18p11.31		rs7190-A	0.3514	2E-10		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
629	chr18	5889764	5889765	rs7190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18p11.31	Intergenic	rs7190-A	0.3514	2E-14	(MTAG)	0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
629	chr18	5889764	5889765	rs7190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18p11.31	Intergenic	rs7190-A	0.3518	3E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
629	chr18	5893148	5893149	rs12457278	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18p11.31	NR	rs12457278-T	0.482	5E-12		0.00772907	[0.0055-0.0099] unit increase	NR [9732723] (imputed)	N
629	chr18	5893148	5893149	rs12457278	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18p11.31	NR	rs12457278-T	0.486	7E-9		0.00866901	[0.0057-0.0116] unit decrease	NR [9732723] (imputed)	N
630	chr18	5936480	5936481	rs141475580	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18p11.31	Intergenic	rs141475580-A	0.999	8E-7	(AA)	0.416	unit increase	Illumina [NR] (imputed)	N
630	chr18	5940340	5940341	rs8094014	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	18p11.31	intergenic	rs8094014-G	0.139	3E-19		0.3	[0.24-0.37] unit decrease	Affymetrix [339439]	N
630	chr18	5947037	5947038	rs72873804	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	18p11.31	LM3MBTL4	rs72873804-T	0.05	6E-7		0.031	[0.019-0.043] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
630	chr18	5958060	5958061	rs62076840	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	18p11.31	Intergenic	rs62076840-A	NR	8E-7	(between families)	4.927	unit increase	Affymetrix [up to 15107142] (imputed)	N
630	chr18	5962066	5962067	rs715149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	18p11.31		rs715149-C	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
630	chr18	5968525	5968526	rs680832	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.31	NR	rs680832-?	NR	4E-16				Affymetrix [NR]	N
630	chr18	5978930	5978931	rs1539808	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	18p11.31	L3MBTL4	rs1539808-T	0.01	4E-6		44.44	[25.55-63.33] unit increase	Illumina [2380486] (imputed)	N
630	chr18	6016414	6016415	rs73376040	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Dysmenorrheic pain severity	5,734 Japanese ancestry female individuals	5,614 Japanese ancestry female individuals	18p11.31	NR	rs73376040-T	0.117365839	5E-7		0.35476956	[0.22-0.49] unit decrease	Affymetrix [536506]	N
631	chr18	6035993	6035994	rs62076855	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18p11.31		rs62076855-C	0.11102	1E-5		0.047164	[0.026-0.068] unit decrease	Affymetrix [15580782] (imputed)	N
632	chr18	6282592	6282593	rs403814	27480026	Liu X	2016-08-02	Sci Rep	Genome Wide Association Study Identifies L3MBTL4 as a Novel Susceptibility Gene for Hypertension.	Hypertension	271 Chinese ancestry cases, 247 Chinese ancestry controls	9,633 Chinese ancestry cases, 11,839 Chinese ancestry controls	18p11.31	L3MBTL4	rs403814-A	NR	6E-9		1.15	[1.07-1.23]	Illumina [727172]	N
633	chr18	6325545	6325546	rs77993129	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	18p11.31	L3MBTL4	rs77993129-T	0.97	4E-6		1.84	[1.42-2.38]	Affymetrix, Illumina [up to 7729175] (imputed)	N
633	chr18	6350285	6350286	rs2601552	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	18p11.31	NR	rs2601552-?	NR	4E-6		0.0961	[0.055-0.137] unit decrease	Illumina [at least 560000] (imputed)	N
633	chr18	6386657	6386658	rs173149	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	18p11.31	L3MBTL4	rs173149-A	0.2695	9E-6		0.374189	[0.21-0.54] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
633	chr18	6407482	6407483	rs4797242	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	18p11.31	RP11-637N19.1	rs4797242-A	0.3	1E-6		0.87	[0.52-1.22] g/day increase	Affymetrix [10353649] (imputed)	N
634	chr18	6426614	6426615	rs12373231	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.31	ARHGAP28	rs12373231-?	NR	9E-6	(LPE 22:6)	0.43877414	[0.25-0.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
634	chr18	6426614	6426615	rs12373231	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.31	ARHGAP28	rs12373231-?	NR	5E-6	(LPC 18:0)	0.4485507	[0.26-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
634	chr18	6453179	6453180	rs1365303	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18p11.31	NR	rs1365303-A		4E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
634	chr18	6461150	6461151	rs11659457	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18p11.31	L3MBTL4	rs11659457-?		4E-14				Affymetrix, Illumina [NR] (imputed)	N
634	chr18	6461229	6461230	rs11659676	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	18p11.31		rs11659676-C	0.41	9E-6		0.48	[0.34-0.66]	Illumina [9175654] (imputed)	N
634	chr18	6477868	6477869	rs12956470	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	18p11.31	L3MBTL4	rs12956470-A	0.17	3E-6		1.37	[0.8-1.94] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
634	chr18	6522755	6522756	rs7506840	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	18p11.31	LOC100130480	rs7506840-?		9E-8				Illumina [NR]	N
635	chr18	6566728	6566729	rs1941489	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	18p11.31	NR	rs1941489-G		5E-6		0.0779	[0.044-0.111] SD units increase	NR [10700000] (imputed)	N
635	chr18	6567181	6567182	rs948426	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	18p11.31	LOC100130480	rs948426-A	0.602	1E-6		1.14	[1.08-1.19]	Illumina [870065]	N
635	chr18	6604403	6604404	rs72876783	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	18p11.31	NR	rs72876783-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
635	chr18	6615782	6615783	rs8089344	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	18p11.31	NR	rs8089344-G	NR	8E-6		0.1167	[0.065-0.168] SD units increase	NR [10700000] (imputed)	N
635	chr18	6623039	6623040	rs141318925	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18p11.31	Intergenic	rs141318925-C	1.0	8E-7	(AA)	0.459	unit increase	Illumina [NR] (imputed)	N
635	chr18	6631691	6631692	rs79439691	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	18p11.31	ARHGAP28	rs79439691-T	0.02	4E-6	(EA)	0.37	0.21-0.53 unit increase	Illumina [NR] (imputed)	N
635	chr18	6668049	6668050	rs11662297	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.31	ARHGAP28	rs11662297-G	0.369	4E-6	(Leptin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
636	chr18	6730718	6730719	rs7237204	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	18p11.31	LOC101927168	rs7237204-?	NR	2E-14		0.5101	[0.37-0.65] unit increase	Affymetrix [11100000] (imputed)	N
636	chr18	6736124	6736125	rs11081265	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18p11.31		rs11081265-G	0.48	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
636	chr18	6736124	6736125	rs11081265	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18p11.31	NR	rs11081265-G	0.4816	1E-8				NR [9056863] (imputed)	N
636	chr18	6737090	6737091	rs12964207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18p11.31		rs12964207-G	NR	4E-8		0.0153	[0.0098-0.0208] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
636	chr18	6739623	6739624	rs9958628	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	18p11.31	ARHGAP28	rs9958628-T	NR	9E-9		3.69		Illumina [NR] (imputed)	N
636	chr18	6781015	6781016	rs6506440	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	18p11.31	ARHGAP28	rs6506440-?		8E-8				Illumina [563980]	N
637	chr18	6824218	6824219	rs9959760	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	18p11.31	NR	rs9959760-T	0.0504082	3E-6	(women)	0.36058	[0.21-0.51] % decrease	Affymetrix [532676] (imputed)	N
637	chr18	6824218	6824219	rs9959760	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	18p11.31	NR	rs9959760-T	0.0504082	5E-7	(women)	0.370356	[0.23-0.51] mm2 decrease	Affymetrix [532676] (imputed)	N
637	chr18	6824218	6824219	rs9959760	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	18p11.31	NR	rs9959760-T	0.0504082	2E-6	(women)	0.439661	[0.26-0.62] % decrease	Affymetrix [532676] (imputed)	N
637	chr18	6824218	6824219	rs9959760	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	18p11.31	NR	rs9959760-T	0.0504082	1E-6	(women)	0.442465	[0.27-0.62] mm2 decrease	Affymetrix [532676] (imputed)	N
637	chr18	6826898	6826899	rs9966975	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	18p11.31	NR	rs9966975-T	0.0526927	5E-6	(women)	0.420111	[0.24-0.6] % decrease	Affymetrix [532676] (imputed)	N
637	chr18	6856529	6856530	rs72883094	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	18p11.31	ARHGAP28	rs72883094-A	0.987	5E-6	(Slope index)	0.5514	[0.32-0.79] unit increase	Affymetrix [8042262] (imputed)	N
637	chr18	6879352	6879353	rs2889535	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18p11.31	ARHGAP28	rs2889535-T	0.291	5E-9		0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
637	chr18	6894474	6894475	rs77741790	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18p11.31	NR	rs77741790-?	NR	4E-6	(Native Hawaiian)	0.3788	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
637	chr18	6939946	6939947	rs597503	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	18p11.31	intergenic	rs597503-?	0.13	2E-8	(Recessive)	1.45	[1.27-1.65]	Affymetrix [319222]	N
637	chr18	6941107	6941108	rs4398173	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	18p11.31	LAMA1	rs4398173-G	NR	4E-6	(EA - Overall tolerability)			Affymetrix [421789]	N
637	chr18	6941661	6941662	rs3810046	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	18p11.31	LAMA1	rs3810046-T	0.456	5E-7	(EA + AA - Overall tolerability)			Affymetrix [421789]	N
638	chr18	6953579	6953580	rs139840509	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18p11.31	LAMA1	rs139840509-A	0.025	8E-7	(Propionic acid derivatives [M01AE])	2.72		Illumina [16500000] (imputed)	N
638	chr18	6956504	6956516	rs11270496	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18p11.31	NR	rs11270496-?	NR	2E-6		0.09777859	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
638	chr18	6974458	6974459	rs183708309	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	18p11.31	Intergenic	rs183708309-T	NR	6E-7	(between families)	5.001	unit decrease	Affymetrix [up to 15107142] (imputed)	N
638	chr18	6990994	6990995	rs17440727	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	18p11.31	NR	rs17440727-?	NR	2E-6				Illumina [7500450] (imputed)	N
638	chr18	7016578	7016579	rs141851670	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	18p11.31		rs141851670-?	NR	4E-6		2.22924	[1.89-2.57]	NR [673172]	N
638	chr18	7034507	7034508	rs566655	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18p11.31		rs566655-G	0.22	5E-13		7.23	z score increase	Affymetrix [9061022] (imputed)	N
638	chr18	7034931	7034932	rs541928	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18p11.31	NR	rs541928-G	0.2211	5E-8				NR [9056863] (imputed)	N
638	chr18	7042910	7042911	rs16951095	20876614	Yoon KA	2010-09-28	Hum Mol Genet	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	18p11.31	NR	rs16951095-C	0.78	7E-6		1.3	[1.10-1.54]	Affymetrix [246758]	N
638	chr18	7068461	7068462	rs8090011	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	18p11.31	LAMA1	rs8090011-G	0.38	8E-9	(Lean)	1.13	[1.09-1.18]	NR [NR]	N
638	chr18	7070641	7070642	rs7240767	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18p11.31	NR	rs7240767-C	0.3792	5E-9		0.0368	[0.024-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
638	chr18	7070641	7070642	rs7240767	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18p11.31	NR	rs7240767-C	0.4776	2E-11		0.034	[0.024-0.044] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
638	chr18	7070641	7070642	rs7240767	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18p11.31	LAMA1	rs7240767-C	0.3762	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
638	chr18	7070641	7070642	rs7240767	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	18p11.31	LAMA1	rs7240767-C	0.383677476727202	2E-8		0.0451	[0.029-0.061] unit increase	NR [5035015] (imputed)	N
638	chr18	7076835	7076836	rs9948462	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	18p11.31	LAMA1	rs9948462-T	0.705	9E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
639	chr18	7162905	7162906	rs74972015	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18p11.31	NR	rs74972015-?	NR	4E-6		15.301	NR unit increase	Affymetrix [at least 600000] (imputed)	N
639	chr18	7165314	7165315	rs76345468	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18p11.31	NR	rs76345468-?	NR	4E-6		15.301	NR unit increase	Affymetrix [at least 600000] (imputed)	N
639	chr18	7165712	7165713	rs75262741	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18p11.31	NR	rs75262741-?	NR	4E-6		15.301	NR unit increase	Affymetrix [at least 600000] (imputed)	N
639	chr18	7165734	7165735	rs147545594	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18p11.31	NR	rs147545594-?	NR	4E-6		15.301	NR unit increase	Affymetrix [at least 600000] (imputed)	N
639	chr18	7172522	7172523	rs9675861	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18p11.31	NR	rs9675861-?	NR	1E-6	(Japanese)	0.395	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
640	chr18	7279872	7279873	rs1984468	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18p11.23	intergenic	rs1984468-A	NR	2E-6				Illumina [up to 11995908] (imputed)	N
640	chr18	7304951	7304952	rs2098484	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	18p11.23	intergenic	rs2098484-A	0.24	1E-6	(female)	0.462	[0.28-0.65] unit increase	Illumina [6380737] (imputed)	N
641	chr18	7397498	7397499	rs117755175	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	18p11.23		rs117755175-A	NR	4E-8		0.464	[0.3-0.63] unit increase	Affymetrix [509886] (imputed)	N
641	chr18	7458204	7458205	rs16951805	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18p11.23	NR	rs16951805-?	NR	5E-9				Illumina [7760689] (imputed)	N
642	chr18	7529437	7529438	rs11081343	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	18p11.23	intergenic	rs11081343-?	NR	9E-6	(docosahexaenoic fatty acid)			Illumina [621723]	N
642	chr18	7543206	7543207	rs478707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.23		rs478707-T	NR	5E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
642	chr18	7543306	7543307	rs477805	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18p11.23		rs477805-A	NR	2E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
642	chr18	7548500	7548501	rs512121	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18p11.23	PTPRM	rs512121-T	0.808023	2E-9		0.0105713	[0.0071-0.014] unit increase	Affymetrix [12370749]	N
642	chr18	7548500	7548501	rs512121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18p11.23		rs512121-?	NR	3E-9				NR [~ 8900000] (imputed)	N
642	chr18	7548730	7548731	rs510314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.23		rs510314-?	NR	3E-10				NR [~ 8900000] (imputed)	N
642	chr18	7585353	7585354	rs4798575	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18p11.23	PTPRM	rs4798575-?		1E-6				Illumina [4322238] (imputed)	N
643	chr18	7607125	7607126	rs6506519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.23		rs6506519-?	NR	1E-8				NR [~ 8900000] (imputed)	N
643	chr18	7608910	7608911	rs1893224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18p11.23		rs1893224-?	NR	4E-11				NR [~ 8900000] (imputed)	N
643	chr18	7611037	7611038	rs8086999	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18p11.23		rs8086999-G	0.16	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
643	chr18	7659751	7659752	rs3937100	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	koll11 abundance in stool	5,959 Finnish ancestry individuals	NA	18p11.23		rs3937100-T	0.0142906	3E-8		0.0635058	[0.041-0.086] unit increase	Illumina [7980478] (imputed)	N
643	chr18	7659751	7659752	rs3937100	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Omnitrophota abundance in stool	5,959 Finnish ancestry individuals	NA	18p11.23		rs3937100-T	0.0142906	5E-9		0.0501267	[0.033-0.067] unit increase	Illumina [7980478] (imputed)	N
643	chr18	7732140	7732141	rs2027670	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	18p11.23		rs2027670-G	0.4691	4E-6		0.7	[0.61-0.82]	Illumina [248101]	N
644	chr18	7734916	7734917	rs658864	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	18p11.23		rs658864-G	0.3454	6E-6		1.41	[1.22-1.64]	Illumina [248101]	N
644	chr18	7751788	7751789	rs629562	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18p11.23	PTPRM	rs629562-?	NR	6E-6		0.116	[0.047-0.185] unit decrease	Illumina [at least 13000000] (imputed)	N
644	chr18	7754653	7754654	rs113776891	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	18p11.23	PTPRM	rs113776891-?	0.924	1E-6		2.2222223	[1.61-3.03]	Illumina [15566900] (imputed)	N
644	chr18	7755770	7755771	rs7243299	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	18p11.23	PTPRM	rs7243299-?	0.10	8E-6		1.63	[1.31-2.03]	Affymetrix [832357]	N
644	chr18	7763362	7763363	rs594771	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		18p11.23	intergenic	rs594771-A	0.564	6E-6		0.385	[0.22-0.55] unit increase	Illumina [640625] (imputed)	N
644	chr18	7807947	7807948	rs16952550	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	18p11.23	PTPRM	rs16952550-C	0.171	2E-6		0.33	[0.19-0.47] unit decrease	Illumina [8203257] (imputed)	N
645	chr18	7880251	7880252	rs60419110	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	18p11.23	PTPRM, LRRC30, LOC100128219	rs60419110-?		4E-6		1.21	[1.11-1.31]	Illumina [5352724] (imputed)	N
645	chr18	7919505	7919506	rs2165910	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	18p11.23	PTPRM	rs2165910-?		4E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
646	chr18	8039003	8039004	rs16952773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.23	NR	rs16952773-G	0.01045	2E-8	(SDHB)	0.1944	NR unit increase	Illumina [1671387] (imputed)	N
646	chr18	8043660	8043661	rs9950590	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	18p11.23	PTPRM	rs9950590-?		5E-6	(AIRg)	11.99	[6.66-17.32] unit increase	Illumina [693128]	N
646	chr18	8053862	8053863	rs79029191	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	18p11.23	PTPRM	rs79029191-?	NR	2E-6				Illumina [9650000] (imputed)	N
646	chr18	8116742	8116743	rs558006880	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	18p11.23	NR	rs558006880-A	0.0014	2E-8		0.35	[0.23-0.47] unit increase	Affymetrix [at least 12428592] (imputed)	N
647	chr18	8161801	8161802	rs25417	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	18p11.23	NR	rs25417-C	0.83	2E-6		0.78	[NR]	Affymetrix [87696888] (imputed)	N
647	chr18	8168059	8168060	rs117896058	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	18p11.23	PTPRM	rs117896058-?		5E-7	(BDE-99)	1.33	[0.82-1.84] unit increase	Affymetrix [629686]	N
647	chr18	8209268	8209269	rs8098064	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	18p11.23	PTPRM	rs8098064-?	0.26	4E-6		1.42	[1.22-1.65]	Affymetrix [832357]	N
647	chr18	8251503	8251504	rs111688157	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	18p11.23	NR	rs111688157-?	NR	2E-6		0.2627	[0.16-0.37] unit increase	Illumina [~ 7800000] (imputed)	N
648	chr18	8275856	8275857	rs6506569	24583629	Senapati S	2014-02-27	Pharmacogenet Genomics	Genome-wide analysis of methotrexate pharmacogenomics in rheumatoid arthritis shows multiple novel risk variants and leads for TYMS regulation.	Response to methotrexate in rheumatoid arthritis	281 Indian ancestry good responder cases, 157 Indian ancestry poor responder cases	NA	18p11.23	PTPRM	rs6506569-G	0.54	7E-6		1.98	[1.46-2.67]	Illumina [432662]	N
648	chr18	8321896	8321912	rs140449984	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18p11.23	PTPRM	rs140449984-T	0.075	7E-7	(EA)	0.104	[0.067-0.141] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
648	chr18	8323983	8323984	rs681383	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18p11.23	NR	rs681383-T	0.078	5E-8	(EA)	0.099	[0.064-0.134] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
648	chr18	8333851	8333852	rs874536	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18p11.23	PTPRM	rs874536-?	NR	8E-6		0.131	[0.06-0.202] unit decrease	Illumina [at least 13000000] (imputed)	N
648	chr18	8378744	8378745	rs3786368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.23	RAB12	rs3786368-?	NR	5E-6	(cyclic adenosine monophosphate)	0.21191032	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
648	chr18	8379088	8379089	rs8082894	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	18p11.23	RAB12	rs8082894-A	0.3185	5E-8		0.015097994	[0.0097-0.0205] unit decrease	Affymetrix [~ 11515000] (imputed)	N
649	chr18	8431080	8431081	rs118025155	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18p11.23	Intergenic	rs118025155-?		2E-6		1.11	[1.07-1.16]	Illumina [7645193] (imputed)	N
649	chr18	8431080	8431081	rs118025155	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18p11.23	Intergenic	rs118025155-?		1E-6		2.61	[1.77-3.85]	Illumina [7645193] (imputed)	N
649	chr18	8479684	8479685	rs12185468	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18p11.23	NR	rs12185468-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
649	chr18	8481337	8481338	rs117975938	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	18p11.23		rs117975938-?	NR	3E-6		1.46854	[1.31-1.63]	NR [673172]	N
650	chr18	8522681	8522682	rs8082812	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	18p11.22	NR	rs8082812-?	NR	5E-67				Affymetrix [NR]	N
650	chr18	8522681	8522682	rs8082812	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	18p11.22	NR	rs8082812-?	NR	6E-64				Affymetrix [NR]	N
650	chr18	8522681	8522682	rs8082812	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	18p11.22	NR	rs8082812-?	NR	4E-8				Affymetrix [NR]	N
650	chr18	8536115	8536116	rs9961574	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	18p11.22	NR	rs9961574-G	NR	3E-6	(phenotype 1)	2.33	[NR]	Illumina [> 8000000] (imputed)	N
650	chr18	8536115	8536116	rs9961574	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	18p11.22	NR	rs9961574-G	NR	3E-6	(phenotype 3)	2.33	[NR]	Illumina [> 8000000] (imputed)	N
650	chr18	8556715	8556716	rs12604637	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	18p11.22	Intergenic	rs12604637-?		8E-6		1.346	[NR]	Affymetrix [492217] (imputed)	N
650	chr18	8622031	8622032	rs9955120	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.22	NR	rs9955120-?	NR	3E-7				Affymetrix [NR]	N
651	chr18	8667060	8667061	rs12458130	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	18p11.22	RP11-674N23.1	rs12458130-?	NR	4E-16	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
651	chr18	8716320	8716321	rs2111836	25824743	Haryono SJ	2015-01-01	Asian Pac J Cancer Prev	A pilot genome-wide association study of breast cancer susceptibility loci in Indonesia.	Breast cancer	89 Indonesian ancestry cases, 46 Indonesian ancestry controls	NA	18p11.22	SOGA2	rs2111836-G	0.22	7E-6		1.32	[1.17-1.44]	Affymetrix [292887]	N
652	chr18	8786699	8786700	rs62086586	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	18p11.22		rs62086586-G	0.86	6E-6		0.13	[0.071-0.189] unit decrease	Illumina [5305352] (imputed)	N
652	chr18	8799827	8799828	rs568267	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18p11.22		rs568267-C	0.26	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
652	chr18	8799827	8799828	rs568267	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18p11.22		rs568267-C	0.26	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
652	chr18	8799827	8799828	rs568267	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18p11.22	NR	rs568267-C	0.2545	6E-13				NR [9056863] (imputed)	N
652	chr18	8800722	8800723	rs631126	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	18p11.22	NR	rs631126-T	0.26	1E-9		1.09	[1.06-1.12]	Affymetrix [9886854] (imputed)	N
652	chr18	8800722	8800723	rs631126	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	18p11.22	NR	rs631126-T	0.26	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
652	chr18	8800722	8800723	rs631126	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	18p11.22	NR	rs631126-T	0.26	1E-9		1.09	[1.06-1.12]	Affymetrix [9886854] (imputed)	N
652	chr18	8800722	8800723	rs631126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18p11.22		rs631126-?	NR	1E-24				NR [~ 8900000] (imputed)	N
652	chr18	8801350	8801351	rs513953	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	18p11.22	MTCL1	rs513953-A	0.2542	1E-13		0.0214	[0.016-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
652	chr18	8801350	8801351	rs513953	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18p11.22	MTCL1	rs513953-A	0.2542	2E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
652	chr18	8801350	8801351	rs513953	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18p11.22	MTCL1	rs513953-A	0.2542	7E-21		0.0255	[0.02-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
652	chr18	8801350	8801351	rs513953	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18p11.22	MTCL1	rs513953-A	0.2542	1E-24		0.0273	[0.022-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
652	chr18	8801350	8801351	rs513953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18p11.22		rs513953-?	NR	1E-12				NR [~ 8900000] (imputed)	N
652	chr18	8801350	8801351	rs513953	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18p11.22		rs513953-?	NR	3E-6		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
652	chr18	8801350	8801351	rs513953	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18p11.22	SOGA2	rs513953-A	0.29	2E-8		14.5	[9.44-19.56] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
652	chr18	8801350	8801351	rs513953	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18p11.22	SOGA2	rs513953-A	0.25	1E-7	(EA)	16.86	[10.59-23.13] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
652	chr18	8805423	8805424	rs689646	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18p11.22	NR	rs689646-A	0.2545	1E-9				NR [9056863] (imputed)	N
652	chr18	8808463	8808464	rs647097	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	18p11.22	MTCL1	rs647097-C	0.27	1E-11		1.08	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
652	chr18	8808463	8808464	rs647097	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	18p11.22	MTCL1	rs647097-C	0.27	6E-9		1.1	[1.06,1.13]	Affymetrix, Illumina [NR] (imputed)	N
652	chr18	8830079	8830080	rs627543	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	18p11.22	SOGA2	rs627543-A	0.41	5E-6		0.0694	[0.04-0.099] unit decrease	Illumina [544877]	N
652	chr18	8840837	8840838	rs4798694	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18p11.22	NR	rs4798694-?		6E-6				Illumina [4322238] (imputed)	N
653	chr18	8931651	8931652	rs7244245	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	18p11.22	intergenic	rs7244245-?		1E-6	(EA)	5.365	[NR]	Illumina [936149]	N
653	chr18	8966143	8966144	rs10502386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	RPS4XP19	rs10502386-A	0.373	7E-6	(Sitting height )	0.01	[NR] cm increase	Illumina [899892]	N
653	chr18	8966143	8966144	rs10502386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	RPS4XP19	rs10502386-A	0.373	6E-6	(Height )	0.02	[NR] cm increase	Illumina [899892]	N
653	chr18	8966143	8966144	rs10502386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	RPS4XP19	rs10502386-A	0.373	5E-6	(Sleep energy expenditure )	0.03	[NR] kcal/d increase	Illumina [899892]	N
653	chr18	8966143	8966144	rs10502386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18p11.22	RPS4XP19	rs10502386-A	0.373	1E-6	(Bone mineral content )	0.03	[NR] kg increase	Illumina [899892]	N
653	chr18	8975665	8975666	rs4798730	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	18p11.22	NR	rs4798730-?	NR	2E-6	(AA)	1764.85	[1757.95-1771.75]	Illumina [905956]	N
653	chr18	8998029	8998030	rs12456390	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	18p11.22	NR	rs12456390-C		5E-6		0.0815	[0.046-0.117] SD units increase	NR [10700000] (imputed)	N
653	chr18	9012995	9012996	rs12606769	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	18p11.22		rs12606769-C	0.207	2E-7		13.27	[8.386-18.16] unit decrease	Affymetrix [6939676] (imputed)	N
653	chr18	9027913	9027914	rs11663316	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	18p11.22	NR	rs11663316-A	0.19	6E-6	(Asian)	0.11	[0.06-0.16] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
653	chr18	9027913	9027914	rs11663316	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	18p11.22	NDUFV2	rs11663316-?	0.07	6E-7		4.2	[NR]	Affymetrix [4893794] (imputed)	N
653	chr18	9031718	9031719	rs7407664	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	18p11.22	SOGA2, NDUFV2	rs7407664-A	0.61	3E-7		0.1408	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
653	chr18	9031718	9031719	rs7407664	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	18p11.22	SOGA2, NDUFV2	rs7407664-A	0.03	4E-6	(correcting APOE e4)	0.1197	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
654	chr18	9109483	9109484	rs4148965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.22		rs4148965-?	NR	2E-10				NR [~ 8900000] (imputed)	N
654	chr18	9109483	9109484	rs4148965	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.22		rs4148965-?	NR	2E-10		0.013638	[0.0092-0.0181] unit decrease	Affymetrix [20259828] (imputed)	N
654	chr18	9112081	9112082	rs6417048	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	18p11.22	NR	rs6417048-T	0.34493	1E-9		0.044889584	[0.03-0.059] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
654	chr18	9114095	9114096	rs1039825	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	18p11.22	RP11-143J12.3, NDUFV2, RP11-21J18.1	rs1039825-T	0.15	4E-7		0.0508	[0.031-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
654	chr18	9124181	9124181	rs58787138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18p11.22	RP11-21J18.1, NDUFV2, RP11-143J12.2	rs58787138-GT	0.085807	6E-9		0.023639528	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
654	chr18	9128452	9128453	rs11872481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18p11.22	NR	rs11872481-G	0.884785	6E-13		0.021207	[0.015-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
654	chr18	9173625	9173626	rs144675973	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	18p11.22	NR	rs144675973-?	NR	8E-7		0.1346	[0.082-0.187] unit increase	Illumina [at least 560000] (imputed)	N
655	chr18	9177296	9177297	rs11660889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.22	NR	rs11660889-C	0.883652	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
655	chr18	9191859	9191860	rs527890099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18p11.22		rs527890099-C	NR	1E-8		0.1269	[0.083-0.171] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
655	chr18	9191859	9191860	rs527890099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18p11.22		rs527890099-C	NR	7E-10		0.1377	[0.094-0.181] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
655	chr18	9191859	9191860	rs527890099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18p11.22	RP11-21J18.1, ANKRD12	rs527890099-C	0.00333000000000006	1E-9		0.11648	[0.078-0.155] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr18	9191859	9191860	rs527890099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18p11.22	RP11-21J18.1, ANKRD12	rs527890099-C	0.00332900000000003	1E-10		0.13576873	[0.094-0.177] unit decrease	Affymetrix [93095623] (imputed)	N
655	chr18	9234395	9234396	rs192024971	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18p11.22	Intergenic	rs192024971-?		8E-6		1.09	[1.05-1.13]	Illumina [7645193] (imputed)	N
655	chr18	9259393	9259394	rs34322928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.22	NR	rs34322928-C	0.117076	5E-11				Affymetrix, Illumina [20825802] (imputed)	N
655	chr18	9259393	9259394	rs34322928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18p11.22	NR	rs34322928-C	0.11703	7E-14		0.022466	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
655	chr18	9259393	9259394	rs34322928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18p11.22		rs34322928-?	NR	3E-10				NR [~ 8900000] (imputed)	N
655	chr18	9282141	9282142	rs1046491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	18p11.22	NR	rs1046491-?	NR	1E-6		0.1362	[0.082-0.19] unit decrease	Illumina [at least 560000] (imputed)	N
655	chr18	9284985	9284986	rs10468795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18p11.22	NR	rs10468795-T	0.11805	2E-12		0.019868	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
655	chr18	9288455	9288456	rs2864527	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	18p11.22	TWSG1	rs2864527-?	NR	4E-6	(DMFS2)			Illumina [518997]	N
655	chr18	9296523	9296524	rs12605822	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	18p11.22	ANKRD12	rs12605822-A	NR	4E-7	(Perc15, Cases)	3.3	[0.56-6.04] unit decrease	Illumina [7600000] (imputed)	N
655	chr18	9296523	9296524	rs12605822	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	18p11.22	ANKRD12	rs12605822-A	NR	4E-7	(%LAA-950, Cases)	0.17	[0.029-0.311] unit increase	Illumina [7600000] (imputed)	N
655	chr18	9300729	9300730	rs117157208	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.22	NR	rs117157208-T	0.01394	3E-8	(CNN2)	0.01648	NR unit increase	Illumina [1671387] (imputed)	N
656	chr18	9314456	9314457	rs181560659	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	18p11.22	NR	rs181560659-T	0.01972	5E-6		0.5055	[0.29-0.72] unit increase	Illumina [10677593] (imputed)	N
656	chr18	9365868	9365869	rs62087474	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	18p11.22	NR	rs62087474-?	NR	1E-8	(Clostridium_xylanovorans)	0.510622	[0.34-0.68] unit increase	Illumina [5293637] (imputed)	N
656	chr18	9371332	9371333	rs8092234	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	18p11.22	NR	rs8092234-?	NR	7E-6		0.037948	[0.021-0.055] unit increase	Affymetrix [9658292] (imputed)	N
656	chr18	9417234	9417235	rs9959700	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	18p11.22	intergenic	rs9959700-A	0.36	9E-6		4.56	z score increase	Illumina [6380737] (imputed)	N
657	chr18	9451986	9451987	rs7228394	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18p11.22	NR	rs7228394-T	0.3432	9E-9				NR [9056863] (imputed)	N
657	chr18	9522605	9522606	rs329007	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18p11.22	RALBP1	rs329007-A	0.7744	3E-9		0.0155	[0.01-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
657	chr18	9526183	9526184	rs328996	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18p11.22	NR	rs328996-T	NR	2E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
657	chr18	9526183	9526184	rs328996	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18p11.22	NR	rs328996-T	NR	3E-7		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
657	chr18	9543484	9543485	rs150395895	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	18p11.22	PPP4R1	rs150395895-A	0.0384	9E-6		0.1393	[0.078-0.201] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
657	chr18	9555833	9555834	rs79248520	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.22	NR	rs79248520-A	0.01045	2E-8	(CYP3A5)	0.1218	NR unit increase	Illumina [1671387] (imputed)	N
657	chr18	9565913	9565914	rs11081483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18p11.22	Intergenic	rs11081483-A	0.2544	3E-9	(MTAG)	0.0156	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
658	chr18	9590895	9590896	rs7240432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18p11.22	Intergenic	rs7240432-T	0.3597	4E-9	(MTAG)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
658	chr18	9617719	9617720	rs11315757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18p11.22	RP11-692N5.1	rs11315757-T	0.741389	9E-16		0.020819888	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
658	chr18	9617719	9617720	rs11315757	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18p11.22	RP11-692N5.1	rs11315757-T	0.741388	2E-72		0.04641995	[0.041-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
658	chr18	9617719	9617720	rs11315757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18p11.22	RP11-692N5.1	rs11315757-T	0.7418	5E-30		0.04720458	[0.039-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
658	chr18	9617741	9617742	rs583306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18p11.22	NR	rs583306-T	0.740109	3E-25		0.021737	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
658	chr18	9617741	9617742	rs583306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.22	NR	rs583306-C	0.25674	1E-104				Affymetrix, Illumina [17210439] (imputed)	N
658	chr18	9617741	9617742	rs583306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18p11.22	NR	rs583306-C	0.260346	1E-105		0.047792	[0.044-0.052] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
658	chr18	9617987	9617988	rs8087795	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18p11.22	Intergenic	rs8087795-T	0.745	4E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
658	chr18	9618004	9618005	rs671339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	18p11.22		rs671339-A	0.264	2E-12				Affymetrix [10369434] (imputed)	N
658	chr18	9618004	9618005	rs671339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18p11.22	RNU6-903P	rs671339-G	0.737181	6E-50		0.038227383	[0.033-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
658	chr18	9618454	9618455	rs11300430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18p11.22		rs11300430-C	NR	4E-18		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
658	chr18	9620158	9620159	rs9807368	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	18p11.22	PPP4R1, RNU6-903P	rs9807368-C	0.7231	3E-29		0.04575849	[0.038-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
658	chr18	9620646	9620647	rs7234128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.22	NR	rs7234128-G	0.78807	3E-25				Affymetrix, Illumina [24588908] (imputed)	N
658	chr18	9623937	9623938	rs7231696	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18p11.22	Intergenic	rs7231696-A	0.7456	5E-15	(MTAG)	0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
658	chr18	9628465	9628466	rs600622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18p11.22		rs600622-G	0.2	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
658	chr18	9635329	9635330	rs12604546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18p11.22	Intergenic	rs12604546-T	0.2681	1E-14	(MTAG)	0.0114	[0.0085-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
658	chr18	9645034	9645035	rs12967010	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18p11.22		rs12967010-T	0.7746	1E-11		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
658	chr18	9675022	9675023	rs138057093	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	18p11.22	RAB31	rs138057093-C	0.008866999999999958	5E-7	(men)	0.106885	[0.065-0.149] unit increase	Affymetrix [641018] (imputed)	N
659	chr18	9701781	9701782	rs674617	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	18p11.22	Intergenic	rs674617-?		9E-6		1.408	[NR]	Affymetrix [492217] (imputed)	N
659	chr18	9701781	9701782	rs674617	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	18p11.22	Intergenic	rs674617-?		9E-6		1.486	[NR]	Affymetrix [492217] (imputed)	N
659	chr18	9712723	9712740	rs6146211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	18p11.22		rs6146211-G	NR	2E-10		0.0253	[0.017-0.033] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
659	chr18	9712723	9712740	rs6146211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18p11.22	NR	rs6146211-G	NR	9E-10		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
659	chr18	9719323	9719331	rs200259120	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	18p11.22	NR	rs200259120-?	NR	5E-7		0.0334	[0.02-0.046] unit increase	Illumina [at least 560000] (imputed)	N
659	chr18	9732372	9732373	rs6506684	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.22	PPP4R1	rs6506684-?	NR	5E-6	(glycerol-3-phosphate)	0.17971706	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
659	chr18	9762932	9762933	rs9951109	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	18p11.22	RAB31	rs9951109-?	0.867	1E-10		1.2195122	[1.15-1.3]	Illumina [238825]	N
659	chr18	9780845	9780846	rs9960703	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	18p11.22	RAB31	rs9960703-T	0.558360307	1E-6		1.089008	[1.05-1.13]	Illumina [10439017] (imputed)	N
659	chr18	9784913	9784914	rs7233332	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure (age interaction)	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	18p11.22	RAB31	rs7233332-G	0.61	6E-6	(EA, PP)	0.0232	[0.013-0.033] mmHg increase per 1 year increase in age	Affymetrix, Illumina [~ 2500000] (imputed)	N
660	chr18	9841514	9841515	rs112655218	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (fluoroquinolones)	43 European ancestry cases, 10,588 European ancestry controls	NA	18p11.22		rs112655218-?		3E-7		4.54		Illumina [505740] (imputed)	N
660	chr18	9848001	9848002	rs11872467	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	18p11.22	RAB31	rs11872467-A	0.11	1E-6		2.29	[1.64-3.20] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
660	chr18	9851387	9851388	rs561102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	18p11.22	RAB31	rs561102-T	0.655542	2E-11		0.015732078	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
660	chr18	9851387	9851388	rs561102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	18p11.22	NR	rs561102-T	0.65494	8E-11		0.01406	[0.0098-0.0183] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
660	chr18	9895328	9895329	rs551642935	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	18p11.22	TXNDC2	rs551642935-A	0.0014	8E-6		0.9405	[0.53-1.35] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
660	chr18	9922401	9922402	rs80261783	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18p11.22	VAPA	rs80261783-T	0.0193086608644621	8E-6		0.0086976	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
661	chr18	9971789	9971790	rs29073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18p11.22		rs29073-?	NR	4E-25				NR [~ 8900000] (imputed)	N
661	chr18	9971789	9971790	rs29073	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs29073-C	0.494336	2E-23		0.0311761	[0.025-0.037] unit decrease	NR [19129689] (imputed)	N
661	chr18	9971789	9971790	rs29073	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18p11.22	NR	rs29073-C	NR	4E-9		0.0362982	NR unit decrease	NR [NR] (imputed)	N
661	chr18	10036550	10036551	rs613223	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18p11.22	VAPA	rs613223-T	0.67322	2E-12		0.0140154	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
661	chr18	10042022	10042023	rs644778	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.22		rs644778-?	NR	3E-14		0.0170697	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
661	chr18	10043958	10043959	rs106763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.22		rs106763-?	NR	2E-12				NR [~ 8900000] (imputed)	N
661	chr18	10060002	10060003	rs17435937	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs17435937-G	0.0579203	2E-22		0.0658071	[0.053-0.079] unit decrease	NR [19129689] (imputed)	N
661	chr18	10075336	10075337	rs12607022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18p11.22		rs12607022-?	NR	5E-9				NR [~ 8900000] (imputed)	N
661	chr18	10078070	10078071	rs8089099	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	18p11.22	VAPA	rs8089099-A	0.2746	4E-24		0.0288	[0.023-0.034] unit increase	Affymetrix [19819130] (imputed)	N
661	chr18	10078070	10078071	rs8089099	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18p11.22	VAPA	rs8089099-A	0.2746	2E-18		0.0235	[0.018-0.029] unit increase	Affymetrix [19819130] (imputed)	N
661	chr18	10078070	10078071	rs8089099	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18p11.22	VAPA	rs8089099-A	0.2746	4E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
661	chr18	10078070	10078071	rs8089099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18p11.22		rs8089099-?	NR	2E-26				NR [~ 8900000] (imputed)	N
661	chr18	10078070	10078071	rs8089099	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	18p11.22	TXNDC2, VAPA	rs8089099-A	NR	4E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
661	chr18	10078070	10078071	rs8089099	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	18p11.22	TXNDC2, VAPA	rs8089099-A	NR	3E-7	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
662	chr18	10140777	10140778	rs638284	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.22	TXNDC2	rs638284-?	NR	5E-8	(phenylalanine)	1.1620127	[0.75-1.58] unit decrease	Affymetrix [at least 2500000] (imputed)	N
662	chr18	10208773	10208774	rs35624710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18p11.22		rs35624710-?	NR	1E-11				NR [~ 8900000] (imputed)	N
662	chr18	10208773	10208774	rs35624710	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs35624710-A	0.333989	7E-9		0.0192435	[0.013-0.026] unit decrease	NR [19129689] (imputed)	N
663	chr18	10231322	10231323	rs4797417	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.22	VAPA	rs4797417-?	NR	9E-6	(3-hydroxyphenylacetic acid)	0.26649296	[0.15-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
663	chr18	10313578	10313579	rs16974161	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	18p11.22	NR	rs16974161-?	NR	1E-6		0.1825	[0.11-0.26] unit increase	Illumina [at least 560000] (imputed)	N
663	chr18	10318232	10318233	rs62093218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18p11.22	RP11-138E9.2	rs62093218-T	0.041716	6E-9		0.032844707	[0.022-0.044] unit increase	Affymetrix [93095623] (imputed)	N
663	chr18	10321346	10321347	rs206626	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	18p11.22	APCDD1	rs206626-A		2E-6		0.13	[0.07-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr18	10348333	10348334	rs11875132	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18p11.22	LINC01254	rs11875132-T	0.566895	2E-24		0.0191849	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
663	chr18	10348333	10348334	rs11875132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.22		rs11875132-?	NR	1E-26				NR [~ 8900000] (imputed)	N
663	chr18	10348333	10348334	rs11875132	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.22		rs11875132-?	NR	4E-23		0.0206752	[0.017-0.025] unit increase	Affymetrix [20259828] (imputed)	N
663	chr18	10348333	10348334	rs11875132	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18p11.22	LINC01254	rs11875132-T	0.563732	2E-9	(women)	0.0282143	[0.019-0.037] unit increase	NR [17166351] (imputed)	N
663	chr18	10348333	10348334	rs11875132	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18p11.22	LINC01254	rs11875132-T	0.563181	2E-12		0.0243519	[0.018-0.031] unit increase	NR [17166351] (imputed)	N
663	chr18	10353526	10353527	rs88943	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs88943-T	0.389276	2E-30		0.0366245	[0.03-0.043] unit decrease	NR [19129689] (imputed)	N
663	chr18	10354648	10354649	rs206435	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	18p11.22	NR	rs206435-?	NR	2E-7	(mixed effect)			Illumina [~ 9700000] (imputed)	N
664	chr18	10361776	10361777	rs427754	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18p11.22	NR	rs427754-C	NR	3E-9		0.0381717	NR unit increase	NR [NR] (imputed)	N
664	chr18	10373503	10373504	rs191880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	18p11.22		rs191880-T	NR	3E-6		4.645869	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
664	chr18	10382882	10382883	rs206548	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	18p11.22	APCDD1	rs206548-T	0.48	9E-7				Affymetrix [2500000] (imputed)	N
664	chr18	10396159	10396160	rs206528	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs206528-A	0.371283	5E-10		0.0200175	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
664	chr18	10423833	10423834	rs11080417	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Streptococcus)	1,068 Japanese ancestry individuals	NA	18p11.22	intergenic	rs11080417-G	0.16	5E-6	(female)	0.544	[0.31-0.78] unit decrease	Illumina [6380737] (imputed)	N
664	chr18	10424213	10424214	rs12954196	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Macroscopic brain infarct	327 European ancestry cases, 582 European ancestry controls	369 individuals	18p11.22	NR	rs12954196-A	0.72	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
664	chr18	10433381	10433382	rs12955584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18p11.22		rs12955584-?	NR	5E-18				NR [~ 8900000] (imputed)	N
664	chr18	10435831	10435832	rs56335910	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18p11.22	NR	rs56335910-G	0.368019	2E-24		0.0331724	[0.027-0.04] unit increase	NR [19129689] (imputed)	N
664	chr18	10439152	10439153	rs176237	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	18p11.22	APCDD1	rs176237-T	NR	5E-6		1.7857	NR	Illumina [up to 4495750] (imputed)	N
664	chr18	10439985	10439986	rs206447	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18p11.22	NR	rs206447-G	NR	2E-9		0.0399174	NR unit increase	NR [NR] (imputed)	N
664	chr18	10443692	10443693	rs7239679	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	18p11.22	intergenic	rs7239679-T	0.45	4E-6	(Primary)	0.2971	[0.17-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
664	chr18	10468452	10468453	rs539412	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	18p11.22		rs539412-T	0.39	4E-10		0.08	unit increase	Illumina [2093892] (imputed)	N
664	chr18	10468452	10468453	rs539412	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	18p11.22		rs539412-T	0.39	3E-10		0.09	unit increase	Illumina [2398641] (imputed)	N
664	chr18	10485043	10485044	rs1662153	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18p11.22		rs1662153-C	0.46	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
664	chr18	10485043	10485044	rs1662153	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18p11.22	NR	rs1662153-C	0.4452	1E-9				NR [9056863] (imputed)	N
665	chr18	10535912	10535913	rs546966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18p11.22		rs546966-?	NR	1E-8				NR [~ 8900000] (imputed)	N
665	chr18	10566403	10566404	rs11877825	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	18p11.22	NAPG	rs11877825-G	NR	3E-11	(Erysipelotrichia class)	0.27	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
665	chr18	10566403	10566404	rs11877825	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	18p11.22	NAPG	rs11877825-G	NR	3E-11	(Erysipelotrichales order)	0.27	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
665	chr18	10566403	10566404	rs11877825	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	18p11.22	NAPG	rs11877825-G	NR	3E-11	(Erysipelotrichaceae family)	0.27	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
665	chr18	10592712	10592713	rs8098600	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18p11.22	NR	rs8098600-?	NR	8E-6	(AA)	0.3827	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
666	chr18	10654631	10654632	rs150356358	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	18p11.22	LOC101927410	rs150356358-A	0.789	2E-8	(TIMP-2)	13.907	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
666	chr18	10676137	10676138	rs9957059	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	18p11.22		rs9957059-?	NR	3E-6		1.272229	[0.74-1.81] unit increase	Illumina [9842460] (imputed)	N
666	chr18	10695156	10695157	rs8093481	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	18p11.22	PIEZO2	rs8093481-A	0.656	1E-6	(Trend model)	1.79	[1.16-2.77]	Illumina [508761]	N
666	chr18	10726606	10726623	rs112976898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18p11.22		rs112976898-G	NR	3E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
667	chr18	10752665	10752666	rs7234309	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18p11.22		rs7234309-T	0.2704	8E-11		0.10032886	[0.07-0.131] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
667	chr18	10766424	10766425	rs2865126	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	18p11.22	PIEZO2	rs2865126-A		8E-6		0.2663	unit increase	Illumina [5767231] (imputed)	N
667	chr18	10861972	10861973	rs57910908	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.22	NR	rs57910908-A	0.01045	3E-8	(ALDH5A1)	0.3719	NR unit increase	Illumina [1671387] (imputed)	N
668	chr18	10879502	10879503	rs11665020	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18p11.22	PIEZO2	rs11665020-C	0.3201	5E-17		0.1371	[0.11-0.17] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
668	chr18	10886340	10886341	rs28478891	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18p11.22	PIEZO2	rs28478891-T	0.926	4E-6		0.118	NR unit increase	Illumina [NR] (imputed)	N
668	chr18	10889677	10889678	rs10853191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18p11.22	PIEZO2	rs10853191-A	0.257	5E-6		0.048	NR unit decrease	Illumina [NR] (imputed)	N
668	chr18	10897200	10897200	rs147501199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18p11.22		rs147501199-AT	NR	4E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
668	chr18	10899027	10899028	rs11080466	21866343	Ahn MJ	2011-08-25	Hum Genet	The 18p11.22 locus is associated with never smoker non-small cell lung cancer susceptibility in Korean populations.	Non-small cell lung cancer	445 Korean ancestry cases, 497 Korean ancestry controls	396 Korean ancestry cases, 998 Korean ancestry controls	18p11.22	APCDD1, NAPG, FAM38B	rs11080466-C	NR	1E-6		1.47	[1.27-1.72]	Affymetrix [474503]	N
668	chr18	10923807	10923808	rs264272	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	18p11.21	FAM38B	rs264272-T	0.4874733	3E-6	(% improvement - SSRI treated - 12 weeks)	0.1712	[0.099-0.243] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
668	chr18	10923807	10923808	rs264272	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	18p11.21	FAM38B	rs264272-G	0.52	4E-6	(% improvement - 12 weeks)	1.144	[1.09-1.2]	Affymetrix, Illumina [1200000] (imputed)	N
668	chr18	10944025	10944026	rs264162	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	18p11.21	NR	rs264162-G		3E-6		0.1097	[0.064-0.156] SD units decrease	NR [10700000] (imputed)	N
669	chr18	11064408	11064409	rs12455924	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	18p11.21	FAM38B	rs12455924-T	0.36	3E-7	(AA-triglyceride response)	17.88	[11.04-24.72] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
669	chr18	11094848	11094849	rs2016302	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.21	NAPG	rs2016302-?	NR	3E-6	(3-hydroxyphenylacetic acid)	0.18101256	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
671	chr18	11282318	11282319	rs7243066	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	18p11.21	C18orf58	rs7243066-?	NR	9E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
671	chr18	11296177	11296178	rs9957564	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (late onset)(pleiotropy)	618 European ancestry cases, 4,320 European ancestry controls	NA	18p11.21	NR	rs9957564-?	NR	9E-6		0.54	0.41-0.71	Illumina [959859] (imputed)	N
672	chr18	11424684	11424685	rs7231776	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.21	NR	rs7231776-?	NR	4E-6				Affymetrix [NR]	N
672	chr18	11451675	11451676	rs74791047	29195075	Martin AR	2017-11-30	Cell	An Unexpectedly Complex Architecture for Skin Pigmentation in Africans.	Tanning	216 Sub-Saharan African ancestry individuals	240 Sub-Saharan African ancestry individuals	18p11.21	NR	rs74791047-?	NR	1E-9				Illumina [at least 241929] (imputed)	N
672	chr18	11494198	11494199	rs1455244	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	18p11.21	intergenic	rs1455244-?	NR	3E-6	(Negative/disorganized symptoms)	0.0605	[NR] unit decrease	Affymetrix [696491]	N
672	chr18	11503564	11503570	rs139716100	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	18p11.21	NR	rs139716100-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
673	chr18	11547844	11547845	rs58749137	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	18p11.21	GNAL	rs58749137-A	0.731304	1E-8		0.0246441	[0.016-0.033] unit increase	Affymetrix [641018] (imputed)	N
673	chr18	11583446	11583447	rs4797559	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	18p11.21	NR	rs4797559-?		6E-6		79.27	[41.62-116.92] unit increase	Illumina [498648]	N
674	chr18	11672970	11672971	rs75695915	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	18p11.21	GNAL	rs75695915-A	0.0157	2E-6		3.367	[2.046-5.543]	Affymetrix, Illumina [14074516] (imputed)	N
674	chr18	11712921	11712922	rs75433892	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	18p11.21	GNAL	rs75433892-A	0.01	2E-6		3.7037036	[3.17-4.23]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
674	chr18	11720581	11720582	rs12458309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.21	CHMP1B	rs12458309-?	NR	6E-6	(CE 16:0)	0.22928552	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
674	chr18	11737230	11737231	rs77292326	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Tandem gait	2,946 individuals	NA	18p11.21	GNAL	rs77292326-A	0.06	4E-7		0.294	[0.18-0.41] unit decrease	Illumina [6200000] (imputed)	N
674	chr18	11739525	11739526	rs143277812	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18p11.21	NR	rs143277812-?	NR	4E-8				Illumina [7760689] (imputed)	N
674	chr18	11759431	11759432	rs9947295	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	18p11.21	GNAL	rs9947295-T	0.11	8E-6	(UAZ Cert)			Affymetrix, Illumina [~ 2500000] (imputed)	N
675	chr18	11831760	11831761	rs1786573	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.21	GNAL	rs1786573-?	NR	9E-6	(CE 18:2)	0.17091437	[0.095-0.246] unit increase	Affymetrix [at least 2500000] (imputed)	N
675	chr18	11831760	11831761	rs1786573	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.21	GNAL	rs1786573-?	NR	3E-8	(CE 16:0)	0.21313699	[0.14-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
675	chr18	11838172	11838173	rs72868658	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	18p11.21	NR	rs72868658-A	0.10947	8E-6		0.1237771	[0.07-0.18] unit increase	Illumina [9469131] (imputed)	N
675	chr18	11872891	11872892	rs12456112	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	18p11.21	NR	rs12456112-G	0.02866	2E-6		0.4391	[0.26-0.62] unit increase	Illumina [10677593] (imputed)	N
675	chr18	11882399	11882400	rs192900903	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Sensation seeking	22,745 European ancestry individuals	NA	18p11.21	GNAL	rs192900903-C	0.0017	3E-7		0.617	[0.854-0.380] unit decrease	Illumina [11434023] (imputed)	N
676	chr18	11959791	11959792	rs184803346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	18p11.21	NR	rs184803346-C	0.115056	3E-10		0.019218	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
676	chr18	11972366	11972367	rs534359086	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	18p11.21	NR	rs534359086-?	NR	1E-5		1.14313	[0.64-1.65] unit increase	NR [13958389] (imputed)	N
676	chr18	11981207	11981208	rs2075824	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	18p11.21	IMPA2	rs2075824-T	NR	4E-6		56.9756	[32.75-81.2] unit increase	Illumina [6995140] (imputed)	N
676	chr18	11981483	11981484	rs111610121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.21		rs111610121-?	NR	3E-11				NR [~ 8900000] (imputed)	N
676	chr18	11987271	11987272	rs7506045	17434096	Matarin M	2007-05-06	Lancet Neurol	A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release.	Stroke	249 European ancestry cases, 268 European ancestry controls	NA	18p11.21	IMPA2	rs7506045-?	0.10	7E-7		5.39	[2.77-10.5]	Illumina [408803]	N
676	chr18	11993078	11993084	rs60287830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.21		rs60287830-A	NR	3E-9		0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
676	chr18	11997349	11997350	rs7244849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18p11.21	IMPA2	rs7244849-G	0.256982	7E-10		0.015622036	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr18	11997349	11997350	rs7244849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18p11.21	NR	rs7244849-G	0.257708	4E-11		0.014009	[0.0099-0.0182] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
676	chr18	12012737	12012738	rs615026	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	18p11.21	NR	rs615026-?	NR	5E-6	(AA)	16.08	[14.16-18]	Illumina [905956]	N
676	chr18	12018664	12018665	rs9948095	31127053	Tang Y	2019-05-24	Diabetes	A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.	Diabetic peripheral neuropathy in type 2 diabetes	4,384 European ancestry cases, 784 European ancestry controls	791 European ancestry cases, 158 European ancestry controls, 1,345 African American individuals	18p11.21	IMPA2	rs9948095-?	NR	5E-6	(EA)	1.369863	[1.19-1.56]	Affymetrix, Illumina [6847206] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	8E-9	(TKT)	0.6077	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	7E-9	(UGDH)	1.086	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	3E-9	(TXNRD1)	0.02029	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	3E-8	(GPX2)	0.1118	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	2E-12	(AKR1C2)	0.8964	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	1E-8	(PGD)	0.3507	NR unit increase	Illumina [1671387] (imputed)	N
677	chr18	12065378	12065379	rs78033763	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs78033763-A	0.01916	1E-13	(AKR1C3)	0.4963	NR unit increase	Illumina [1671387] (imputed)	N
678	chr18	12207414	12207415	rs71351460	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	18p11.21	RP11-64C12.3	rs71351460-G	NR	5E-6		0.0272	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
678	chr18	12286112	12286113	rs34396552	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	18p11.21	CIDEA	rs34396552-G	0.359	5E-8				Affymetrix [432921]	N
678	chr18	12291679	12291680	rs62097526	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	18p11.21	CIDEA	rs62097526-?		4E-6	(EA)	0.387	unit increase	Illumina [1819374] (imputed)	N
679	chr18	12388992	12388993	rs72875338	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	18p11.21	NR	rs72875338-?	NR	5E-7		0.358233	[0.22-0.5] unit decrease	NR [13958389] (imputed)	N
679	chr18	12394262	12394263	rs77650974	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	18p11.21		rs77650974-A	0.32274	1E-8		0.1502	[0.099-0.202] unit decrease	Illumina [18430820] (imputed)	N
679	chr18	12394262	12394263	rs77650974	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Granulocyte %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	18p11.21		rs77650974-A	0.32274	1E-8		0.1512	[0.099-0.203] unit increase	Illumina [18430820] (imputed)	N
679	chr18	12413984	12413985	rs546713	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 1 or 2)	330 European ancestry cases, 5,199 European ancestry controls	NA	18p11.21		rs546713-G	0.47	8E-6		1.43		Illumina [10258281] (imputed)	N
680	chr18	12491959	12491960	rs574377702	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - venlafaxine (UKB data field 20003_1140916282)	1,856 European ancestry cases, 454,420 European ancestry controls	NA	18p11.21		rs574377702-A	8.545E-4	3E-9		4.71	[3.15-6.27] unit increase	NR [11842647] (imputed)	N
680	chr18	12509954	12509955	rs146223307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18p11.21		rs146223307-?	NR	6E-9				NR [~ 8900000] (imputed)	N
680	chr18	12525294	12525295	rs8090811	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	18p11.21	SPIRE1	rs8090811-T	NR	8E-6		0.12009786	[0.067-0.173] unit increase	Affymetrix [9576485] (imputed)	N
680	chr18	12546602	12546603	rs34933611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18p11.21	SPIRE1	rs34933611-C	0.08741	4E-9		0.023294197	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr18	12546602	12546603	rs34933611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18p11.21	SPIRE1	rs34933611-C	0.087418	5E-9		0.023119565	[0.015-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr18	12546602	12546603	rs34933611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18p11.21	SPIRE1	rs34933611-C	0.087402	2E-10		0.025213229	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr18	12550746	12550747	rs1940973	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	18p11.21	SPIRE1	rs1940973-?		8E-7	(AA)			Illumina [NR]	N
681	chr18	12606462	12606463	rs9959145	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	18p11.21	SPIRE1	rs9959145-?		3E-8	(AA)			Illumina [NR]	N
681	chr18	12711051	12711052	rs963920	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18p11.21	PSMG2	rs963920-T	0.678	4E-11		0.1227	[0.086-0.159] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
682	chr18	12736041	12736042	rs12966571	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18p11.21	PSMG2	rs12966571-A	0.1232	8E-9		0.1798	[0.12-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
682	chr18	12741266	12741267	rs7242404	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	18p11.21	NR	rs7242404-G	NR	6E-6		0.1211	[0.069-0.173] SD units increase	NR [10700000] (imputed)	N
682	chr18	12741266	12741267	rs7242404	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	18p11.21	NR	rs7242404-G		3E-6		0.1228	[0.071-0.175] SD units increase	NR [10700000] (imputed)	N
682	chr18	12745888	12745889	rs7226608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18p11.21	NR	rs7226608-T	0.107005	2E-11		0.020332	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
682	chr18	12770850	12770851	rs9960807	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	18p11.21	RP11-973H7.1	rs9960807-G	NR	3E-14		1.28	[1.2-1.36]	Illumina [7461261] (imputed)	N
682	chr18	12773337	12773338	rs2847266	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	18p11.21	PSMG2, PTPN2	rs2847266-C	NR	6E-7		1.2346594		Illumina [1233578] (imputed)	N
682	chr18	12775590	12775591	rs2847260	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	18p11.21	NR	rs2847260-G	NR	3E-7	(EA)	1.21	[1.12-1.30]	Illumina [128705]	N
682	chr18	12777324	12777325	rs7237497	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	18p11.21	RP11-973H7.1	rs7237497-?	NR	2E-7	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
682	chr18	12777572	12777573	rs2542148	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	18p11.21	AP005482.1	rs2542148-C	0.166	3E-16		1.27		Illumina [252970]	N
682	chr18	12777572	12777573	rs2542148	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	18p11.21	AP005482.1	rs2542148-C		8E-12		1.1785113		Illumina [252970]	N
682	chr18	12777572	12777573	rs2542148	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	18p11.21	PTPN2	rs2542148-C	NA	5E-16				Illumina [252970]	N
682	chr18	12778714	12778715	rs2847278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	18p11.21		rs2847278-T	NR	1E-9		0.1554	[0.11-0.21] unit decrease	Affymetrix, Illumina [25837106] (imputed)	N
682	chr18	12778714	12778715	rs2847278	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	18p11.21	NR	rs2847278-?	NR	8E-28	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
682	chr18	12779946	12779947	rs2542151	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	18p11.21	PTPN2	rs2542151-G	NR	4E-13		1.3	[NR]	Affymetrix, Illumina [NR]	N
682	chr18	12779946	12779947	rs2542151	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	18p11.21	PTPN2	rs2542151-C	NR	9E-8				Affymetrix [up to 335565]	N
682	chr18	12779946	12779947	rs2542151	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	18p11.21	PTPN2	rs2542151-G	0.15	5E-17		1.35	[NR]	Affymetrix, Illumina [635547] (imputed)	N
682	chr18	12779946	12779947	rs2542151	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	18p11.21	PTPN2	rs2542151-G	0.16	2E-7		1.3	[1.14-1.48]	Affymetrix [469557]	N
682	chr18	12779946	12779947	rs2542151	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	18p11.21	PTPN2	rs2542151-?	0.18	3E-8		1.15	[1.00-1.32]	Affymetrix [see WTCCC]	N
682	chr18	12779946	12779947	rs2542151	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	18p11.21	PTPN2	rs2542151-C	0.16	1E-14		1.3	[1.22-1.40]	Affymetrix [NR]	N
682	chr18	12780463	12780464	rs9952991	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	18p11.21	RP11-973H7.1	rs9952991-?	NR	1E-7	(Shared)			Affymetrix, Illumina [~ 5200000]	N
682	chr18	12782447	12782448	rs2847293	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	18p11.21	PTPN2	rs2847293-A	0.17	1E-12	(additive model)	1.31	[1.22-1.41]	Illumina [123003]	N
682	chr18	12782848	12782849	rs6505765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	18p11.21		rs6505765-G	NR	3E-17		0.0764	[0.059-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
682	chr18	12782848	12782849	rs6505765	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	18p11.21	PTPN2	rs6505765-G	0.343	2E-11		1.07	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
682	chr18	12782848	12782849	rs6505765	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	18p11.21	PTPN2	rs6505765-G	0.344388	3E-15		0.075718865	[0.057-0.095] unit increase	Affymetrix [7288503] (imputed)	N
682	chr18	12782848	12782849	rs6505765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	18p11.21		rs6505765-?	NR	2E-13				NR [~ 8900000] (imputed)	N
682	chr18	12797693	12797694	rs2847297	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	18p11.21		rs2847297-A	NR	3E-14		0.91	[0.89-0.94]	NR [13810676] (imputed)	N
682	chr18	12797693	12797694	rs2847297	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	18p11.21	PTPN2	rs2847297-A	0.34	3E-8		1.09	[1.06-1.13]	Illumina [133816] (imputed)	N
682	chr18	12797693	12797694	rs2847297	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	18p11.21	PTPN2	rs2847297-G	0.33	2E-8		1.1	[1.07-1.14]	Affymetrix, Illumina [1948139]	N
682	chr18	12800819	12800820	rs2542170	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18p11.21	NR	rs2542170-T	0.427342	9E-27		0.0219222	[0.018-0.026] unit decrease	NR [NR]	N
682	chr18	12805387	12805388	rs12967678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.21	NR	rs12967678-A	0.113179	6E-11				Affymetrix, Illumina [24332387] (imputed)	N
682	chr18	12805387	12805388	rs12967678	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	18p11.21	PTPN2	rs12967678-A		1E-6		1.38	[NR]	Illumina [up to 9464381] (imputed)	N
682	chr18	12809339	12809340	rs1893217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	18p11.21		rs1893217-?	NR	8E-17				NR [~ 8900000] (imputed)	N
682	chr18	12809339	12809340	rs1893217	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	18p11.21	NR	rs1893217-G	0.1602	3E-13	(EA)	1.1283141	[1.1-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
682	chr18	12809339	12809340	rs1893217	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	18p11.21	NR	rs1893217-G	0.1602	1E-27	(EA)	1.1539862	[1.13-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
682	chr18	12809339	12809340	rs1893217	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	18p11.21	NR	rs1893217-G	0.1602	6E-25	(EA)	1.1773959	[1.15-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
682	chr18	12809339	12809340	rs1893217	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	18p11.21	PTPN2	rs1893217-G	0.16	1E-15		1.21		Illumina [135870]	N
682	chr18	12809339	12809340	rs1893217	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18p11.21	intergenic	rs1893217-G	0.157	3E-26		1.171	[1.127-1.216]	Affymetrix, Illumina [1230000] (imputed)	N
682	chr18	12809339	12809340	rs1893217	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	18p11.21	PTPN2	rs1893217-G	NR	5E-12				Illumina [472854]	N
682	chr18	12809339	12809340	rs1893217	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	18p11.21	PTPN2	rs1893217-G	0.153	1E-14		1.25	[1.18-1.32]	Affymetrix, Illumina [953241] (imputed)	N
682	chr18	12809339	12809340	rs1893217	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	18p11.21	PTPN2	rs1893217-G	0.17	3E-10		1.17	[1.12-1.23]	Illumina [292387]	N
682	chr18	12809339	12809340	rs1893217	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	18p11.21	PTPN2	rs1893217-?	NR	4E-15				Affymetrix, Illumina [841622] (imputed)	N
682	chr18	12818921	12818922	rs80262450	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	18p11.21	PTPN2	rs80262450-?		1E-16				Illumina [9725440] (imputed)	N
682	chr18	12818921	12818922	rs80262450	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	18p11.21	PTPN2	rs80262450-?		1E-20				Illumina [9560910] (imputed)	N
682	chr18	12821592	12821593	rs2847281	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	18p11.21	PTPN2	rs2847281-C	0.16	2E-11		1.2	[1.14-1.26]	NR [NR]	N
682	chr18	12821592	12821593	rs2847281	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	18p11.21	PTPN2	rs2847281-A	NR	2E-8		0.031	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
682	chr18	12827350	12827351	rs56062842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	18p11.21		rs56062842-T	NR	1E-16		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
682	chr18	12830537	12830538	rs12971201	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18p11.21	NR	rs12971201-A	0.399646	5E-19		0.016759	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
682	chr18	12830537	12830538	rs12971201	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	18p11.21	PTPN2	rs12971201-G	0.61	2E-6	(conditioned on rs1893217)	1.1235955		Illumina [135870]	N
682	chr18	12841175	12841176	rs2852151	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	18p11.21	PTPN2	rs2852151-A	0.4	1E-11		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
682	chr18	12842479	12842480	rs12969241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18p11.21		rs12969241-T	NR	1E-10		0.0164	[0.011-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
682	chr18	12843136	12843137	rs11875687	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	18p11.21	PTPN2	rs11875687-C	0.15	2E-10		1.17		Illumina [139553]	N
682	chr18	12844049	12844050	rs56150366	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18p11.21	NR	rs56150366-C	0.439739	2E-10		0.011669	[0.0081-0.0153] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
682	chr18	12844049	12844050	rs56150366	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	18p11.21	PTPN2	rs56150366-T	0.57	3E-9	(BMI-adjusted)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
683	chr18	12848348	12848349	rs674222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.21	NR	rs674222-C	0.34447	3E-17				Affymetrix, Illumina [24653286] (imputed)	N
683	chr18	12854071	12854072	rs514000	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	18p11.21	PTPN2	rs514000-C	0.33	9E-8		1.33	[1.20-1.48]	Illumina [549616] (imputed)	N
683	chr18	12856907	12856908	rs2847273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18p11.21	PTPN2	rs2847273-C	0.39999	3E-10		0.014287384	[0.0099-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr18	12856907	12856908	rs2847273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.21	NR	rs2847273-C	0.357721	3E-13				Affymetrix, Illumina [19872809] (imputed)	N
683	chr18	12856907	12856908	rs2847273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18p11.21		rs2847273-?	NR	1E-10				NR [~ 8900000] (imputed)	N
683	chr18	12857001	12857002	rs559406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	18p11.21		rs559406-T	NR	7E-15		0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
683	chr18	12857001	12857002	rs559406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	18p11.21		rs559406-T	NR	4E-15		0.0139	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
683	chr18	12857001	12857002	rs559406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18p11.21	PTPN2	rs559406-T	0.547701	9E-16		0.017880801	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr18	12857001	12857002	rs559406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18p11.21	PTPN2	rs559406-T	0.547721	3E-16		0.018205807	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr18	12857001	12857002	rs559406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	18p11.21	NR	rs559406-T	0.548147	4E-11		0.012576	[0.0088-0.0163] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
683	chr18	12857001	12857002	rs559406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18p11.21	NR	rs559406-T	0.462683	1E-17				Affymetrix, Illumina [24558453] (imputed)	N
683	chr18	12857001	12857002	rs559406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	18p11.21	NR	rs559406-T	0.548205	5E-19		0.016548	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
683	chr18	12857001	12857002	rs559406	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	18p11.21	PTPN2	rs559406-G	0.45	1E-10		1.1		Illumina, Perlegen [9113515] (imputed)	N
683	chr18	12857757	12857758	rs62097857	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	18p11.21	PTPN2	rs62097857-?	NR	1E-11	(subset analysis)			Illumina [130052]	N
683	chr18	12857757	12857758	rs62097857	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	18p11.21	PTPN2	rs62097857-A	NR	4E-6		1.2224		Illumina [129464] (imputed)	N
683	chr18	12860800	12860801	rs80209296	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	18p11.21	PTPN2	rs80209296-?	NR	1E-12		1.14		Illumina [109572]	N
683	chr18	12866436	12866441	rs201562238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18p11.21	PTPN2	rs201562238-A	0.498767	1E-12		0.016235039	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
683	chr18	12866436	12866441	rs201562238	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	18p11.21	PTPN2	rs201562238-AAAAACAAAACAAAAC		1E-12		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
683	chr18	12879465	12879466	rs12968719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18p11.21	PTPN2	rs12968719-A	0.123832	2E-11		0.022597535	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
683	chr18	12879465	12879466	rs12968719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18p11.21		rs12968719-?	NR	3E-11				NR [~ 8900000] (imputed)	N
683	chr18	12879465	12879466	rs12968719	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	18p11.21	PTPN2	rs12968719-?	NR	2E-26	(subset analysis)			Illumina [130052]	N
683	chr18	12881360	12881361	rs8083786	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	18p11.21		rs8083786-A	0.6737	2E-6	(East Asian)	1.08	[1.04-1.11]	Affymetrix, Illumina [up to 47000000] (imputed)	N
683	chr18	12881360	12881361	rs8083786	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	18p11.21	PTPN2	rs8083786-A	NR	2E-15		0.125218	[0.072-0.178] unit decrease	Illumina [8380626] (imputed)	N
683	chr18	12881360	12881361	rs8083786	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	18p11.21	PTPN2	rs8083786-A	0.84	1E-7	(EA)	0.11	[0.069-0.151] unit decrease	Illumina [8380626] (imputed)	N
683	chr18	12881360	12881361	rs8083786	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	18p11.21	PTPN2	rs8083786-A	0.66	2E-10	(East Asian)	0.16545	[0.11-0.22] unit decrease	Illumina [8380626] (imputed)	N
683	chr18	12881360	12881361	rs8083786	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	PTPN2	rs8083786-G	0.34	2E-11	(East Asian)	1.18	[1.13-1.24]	Affymetrix, Illumina [up to 9739303] (imputed)	N
683	chr18	12881360	12881361	rs8083786	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	PTPN2	rs8083786-G	0.21	6E-18		1.14	[1.11-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
683	chr18	12881360	12881361	rs8083786	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18p11.21	PTPN2	rs8083786-G	0.16	8E-9	(EA)	1.12	[1.08-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
683	chr18	12882358	12882359	rs4797709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18p11.21	PTPN2	rs4797709-G	0.601189	2E-9		0.013786691	[0.0093-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
683	chr18	12884342	12884343	rs2292759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18p11.21	NR	rs2292759-G	0.600718	3E-14		0.015476	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
683	chr18	12885119	12885120	rs149850873	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	18p11.21	PTPN2	rs149850873-?	NR	5E-7	(conditioned on rs2847293)	1.56		Illumina [123003]	N
683	chr18	12887749	12887750	rs8096327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18p11.21	PTPN2	rs8096327-G	0.391355	2E-9		0.013741148	[0.0092-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr18	12904398	12904399	rs12961799	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18p11.21	NR	rs12961799-C	NR	3E-9		0.011	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
683	chr18	12904398	12904399	rs12961799	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18p11.21	PTPN2	rs12961799-C	0.268	8E-6	(EA)	0.016	[0.0091-0.0237] kg/m2 increase	Affymetrix, Illumina [2550021]	N
683	chr18	12904398	12904399	rs12961799	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18p11.21	PTPN2	rs12961799-C	0.264	4E-6		0.017	[0.0095-0.0237] kg/m2 increase	Affymetrix, Illumina [2550021]	N
683	chr18	12909503	12909504	rs144653651	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	18p11.21	PTPN2, SEH1L	rs144653651-A	0.075	2E-7		0.265	[0.17-0.36] unit increase	Illumina [6391392] (imputed)	N
683	chr18	12923042	12923043	rs16939974	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	18p11.21	NR	rs16939974-T	0.836316	6E-6		0.104	[0.059-0.149] unit increase	NR [9260588] (imputed)	N
683	chr18	12929720	12929721	rs11662766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18p11.21		rs11662766-G	NR	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
683	chr18	12945309	12945310	rs9951698	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18p11.21	SEH1L	rs9951698-C	NR	2E-8		0.017264955	[0.011-0.023] unit increase	Affymetrix [NR]	N
683	chr18	12947461	12947462	rs3809912	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18p11.21	SEH1L	rs3809912-?	NR	1E-8		0.0121842045	[0.008-0.0164] unit increase	NR [7306098]	N
683	chr18	12947461	12947462	rs3809912	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18p11.21	Intergenic	rs3809912-T	0.3623	1E-9	(MTAG)	0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
683	chr18	12947461	12947462	rs3809912	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	18p11.21	SEH1L	rs3809912-?	NR	7E-9		5.79	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
683	chr18	12947461	12947462	rs3809912	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	18p11.21	SEH1L	rs3809912-?	NR	3E-8		5.521	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
683	chr18	12955145	12955146	rs182717611	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	18p11.21	SEH1L	rs182717611-T	0.02	5E-8	(EA)	0.17	[0.11-0.23] unit increase	Affymetrix [at least 897981] (imputed)	N
683	chr18	12974736	12974737	rs9948681	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18p11.21	NR	rs9948681-?	NR	7E-8		5.397	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
684	chr18	12977944	12977945	rs72636758	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18p11.21	SEH1L	rs72636758-A	0.898369	1E-9		0.0186453	[0.013-0.025] unit decrease	NR [13737936] (imputed)	N
684	chr18	12991392	12991393	rs11663049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18p11.21		rs11663049-T	0.3908	8E-9	(conditional-joint)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
684	chr18	13001511	13001512	rs4499304	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18p11.21	NR	rs4499304-G	0.566726	6E-10		0.0120886	[0.0083-0.0159] unit decrease	NR [NR]	N
684	chr18	13005472	13005473	rs8097125	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18p11.21		rs8097125-T	0.3802	2E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
684	chr18	13040083	13040084	rs7229869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18p11.21		rs7229869-?	NR	7E-10				NR [~ 8900000] (imputed)	N
684	chr18	13072978	13072979	rs1787013	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18p11.21	NA	rs1787013-T	0.5586	1E-9		0.0108	[0.0073-0.0143] unit decrease	NR [~ 27400000] (imputed)	N
684	chr18	13076939	13076940	rs569453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18p11.21	Intergenic	rs569453-A	0.3931	2E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
684	chr18	13104250	13104251	rs1787003	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18p11.21	CEP192	rs1787003-A	NR	4E-8		5.511	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
685	chr18	13110430	13110431	rs58685532	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18p11.21	NR	rs58685532-A	0.1721	4E-6	(EA)	0.041	[0.024-0.058] unit decrease	Illumina [~ 11800000] (imputed)	N
685	chr18	13116431	13116432	rs1786263	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18p11.21	CEP192	rs1786263-T	0.6055	1E-22		0.019	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
685	chr18	13116431	13116432	rs1786263	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	18p11.21	CEP192	rs1786263-T	0.606	1E-13		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
685	chr18	13116431	13116432	rs1786263	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	18p11.21	CEP192	rs1786263-T	0.606	5E-13		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
685	chr18	13116431	13116432	rs1786263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18p11.21		rs1786263-?	NR	6E-22				NR [~ 8900000] (imputed)	N
685	chr18	13123644	13123645	rs547084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18p11.21		rs547084-G	NR	7E-16		0.0115	[0.0088-0.0142] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
685	chr18	13128758	13128759	rs115915276	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18p11.21	NR	rs115915276-?	NR	6E-6		0.064515	[0.037-0.092] unit increase	Affymetrix [805426] (imputed)	N
685	chr18	13161472	13161473	rs1893323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18p11.21		rs1893323-?	NR	2E-9				NR [~ 8900000] (imputed)	N
685	chr18	13182324	13182325	rs35761930	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18p11.21	NR	rs35761930-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
685	chr18	13182324	13182325	rs35761930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18p11.21		rs35761930-?	NR	2E-9				NR [~ 8900000] (imputed)	N
685	chr18	13196359	13196360	rs11663356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18p11.21		rs11663356-G	NR	1E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
685	chr18	13209120	13209121	rs60238138	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18p11.21	NR	rs60238138-?	NR	4E-6		4.593	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
685	chr18	13222596	13222597	rs34107757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18p11.21		rs34107757-A	NR	1E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
685	chr18	13223203	13223204	rs76266457	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LDLRAD4	rs76266457-?	NR	3E-11	(male)	3.00259	[NR] unit decrease	Affymetrix [NR] (imputed)	N
686	chr18	13253597	13253598	rs11662617	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	18p11.21	NR	rs11662617-A	NR	9E-7		0.01001	[0.006-0.014] unit increase	Illumina [~ 540852]	N
686	chr18	13271366	13271367	rs11662800	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18p11.21	NR	rs11662800-G	0.5816	2E-9		0.0275	[0.018-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
686	chr18	13298942	13298943	rs62097350	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18p11.21	NR	rs62097350-?	NR	2E-6	(Japanese)	0.3644	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
686	chr18	13302670	13302671	rs9961087	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	18p11.21		rs9961087-?	NR	8E-6		1.05757	[1.03-1.08]	NR [688737]	N
686	chr18	13325649	13325650	rs949259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18p11.21	LDLRAD4	rs949259-T	0.279082	4E-10		0.015776314	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
686	chr18	13329914	13329915	rs113062739	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	18p11.21	LDLRAD4	rs113062739-A	NR	3E-8	(PWY-5862_superpathway_of_demethylmenaquinol-9_biosynthesis)	5.535196	NR Z-score decrease	Illumina [8100000] (imputed)	N
686	chr18	13357199	13357200	rs981621	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	18p11.21	C18orf1	rs981621-G	NR	2E-7		1.39	[1.23-1.57]	NR [7738399] (imputed)	N
686	chr18	13357228	13357229	rs8086741	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	18p11.21	LDLRAD4	rs8086741-C	0.01	7E-7		0.37	[0.23-0.51] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
686	chr18	13366861	13366862	rs12456874	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	18p11.21	c18orf1	rs12456874-G	0.25	6E-7		1.38	[1.22-1.57]	Illumina [2731086] (imputed)	N
687	chr18	13397296	13397297	rs530841299	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	18p11.21	LDLRAD4	rs530841299-?	NR	4E-8		2.2373	[1.41-3.06] unit increase	Affymetrix [11100000] (imputed)	N
687	chr18	13437026	13437027	rs12232685	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18p11.21	LDLRAD4	rs12232685-T	0.008	9E-9	(Macrolides [J01FA])	3.82		Illumina [16500000] (imputed)	N
687	chr18	13437026	13437027	rs12232685	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18p11.21	LDLRAD4	rs12232685-T	0.007	2E-8	(Glucocorticoids [H02AB])	6.99		Illumina [16500000] (imputed)	N
687	chr18	13445170	13445171	rs11872353	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	18p11.21	C18orf1	rs11872353-?	NR	3E-6				Affymetrix [753382]	N
687	chr18	13478720	13478721	rs35648237	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	18p11.21		rs35648237-G	0.09	5E-7		1.67		Illumina [10258281] (imputed)	N
688	chr18	13594998	13594999	rs3887193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18p11.21		rs3887193-?	NR	1E-9				NR [~ 8900000] (imputed)	N
689	chr18	13639217	13639218	rs1785123	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18p11.21	NR	rs1785123-?	NR	6E-8				Affymetrix [NR]	N
689	chr18	13642920	13642927	rs565611618	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.21		rs565611618-?	NR	4E-20		0.0271796	[0.021-0.033] unit increase	Affymetrix [20259828] (imputed)	N
689	chr18	13657932	13657932	rs141827440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18p11.21		rs141827440-TTATACA	NR	1E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
689	chr18	13657932	13657932	rs141827440	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	18p11.21	NR	rs141827440-TTATACA	NR	3E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
689	chr18	13659018	13659019	rs2040189	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18p11.21	FAM210A	rs2040189-C	0.642584	2E-13		0.00164099	[0.0012-0.0021] unit increase	Affymetrix [13995440] (imputed)	N
689	chr18	13660589	13660590	rs12956554	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	18p11.21	LDLRAD4, FAM210A	rs12956554-C	0.67	1E-8		5.69	z-score increase	Affymetrix [4311822] (imputed)	N
689	chr18	13686333	13686334	rs12605367	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	18p11.21	FAM210A	rs12605367-T	0.709	6E-6		1.14	[1.08-1.2]	Affymetrix, Illumina [8000000] (imputed)	N
689	chr18	13708573	13708574	rs4796995	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	18p11.21	FAM210A	rs4796995-A	0.6314	2E-27		0.0334	[0.027-0.039] unit decrease	NR [13977204] (imputed)	N
689	chr18	13708573	13708574	rs4796995	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	18p11.21	C18orf19	rs4796995-A	0.63	5E-8		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
689	chr18	13711001	13711002	rs1296042	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.21		rs1296042-?	NR	6E-40		0.0473203	[0.04-0.055] unit increase	Affymetrix [20259828] (imputed)	N
689	chr18	13719509	13719510	rs4635400	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18p11.21	FAM210A	rs4635400-G	0.6396	3E-123		0.0469927	[0.043-0.051] unit increase	NR [13737936] (imputed)	N
689	chr18	13719509	13719510	rs4635400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.21		rs4635400-?	NR	1E-150				NR [~ 8900000] (imputed)	N
689	chr18	13719509	13719510	rs4635400	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	18p11.21	FAM210A, RNMT	rs4635400-A	0.36	1E-18		1.04	[1.03-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
689	chr18	13719509	13719510	rs4635400	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.21		rs4635400-?	NR	3E-140		0.0526902	[0.048-0.057] unit increase	Affymetrix [20259828] (imputed)	N
689	chr18	13722307	13722308	rs1941749	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18p11.21		rs1941749-?	NR	4E-140		0.0526636	[0.048-0.057] unit increase	Affymetrix [20259828] (imputed)	N
689	chr18	13722307	13722308	rs1941749	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18p11.21	FAM210A	rs1941749-A	0.641273	6E-18	(men)	0.0462445	[0.036-0.057] unit increase	NR [17166351] (imputed)	N
689	chr18	13722307	13722308	rs1941749	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18p11.21	FAM210A	rs1941749-A	0.64084	4E-43		0.0480688	[0.041-0.055] unit increase	NR [17166351] (imputed)	N
689	chr18	13722307	13722308	rs1941749	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18p11.21	FAM210A	rs1941749-A	0.640463	2E-24	(women)	0.048728	[0.039-0.058] unit increase	NR [17166351] (imputed)	N
689	chr18	13725432	13725433	rs1284200	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18p11.21	FAM210A	rs1284200-A	0.0861893	5E-12		0.023546	[0.017-0.03] unit increase	NR [13737936] (imputed)	N
689	chr18	13725959	13725960	rs3826559	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18p11.21	NR	rs3826559-G	0.660568	7E-11		0.0135293	[0.0095-0.0176] unit decrease	NR [NR]	N
689	chr18	13742809	13742810	rs187319357	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18p11.21	NR	rs187319357-?	NR	2E-8				Illumina [7760689] (imputed)	N
690	chr18	13790876	13790877	rs11662730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18p11.21		rs11662730-?	NR	3E-12				NR [~ 8900000] (imputed)	N
690	chr18	13805141	13805142	rs62086686	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	18p11.21	NR	rs62086686-?		4E-6		2.173913	[NR]	Illumina [NR] (imputed)	N
690	chr18	13823128	13823129	rs143756124	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	18p11.21	MC5R	rs143756124-T	0.932	5E-6	(EA)			Illumina [NR] (imputed)	N
690	chr18	13826677	13826678	rs143262370	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	18p11.21	NR	rs143262370-T	0.0071	9E-6	(EA)	1.301	mmHg decrease	Illumina [242296]	N
690	chr18	13835000	13835001	rs1787864	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18p11.21	NR	rs1787864-?	NR	3E-8				Illumina [7760689] (imputed)	N
690	chr18	13843245	13843246	rs12956045	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	18p11.21	MC5R	rs12956045-A	NR	8E-7	(BDRABS)	0.013	[0.0079-0.0181] unit decrease	Illumina [NR] (imputed)	N
690	chr18	13843245	13843246	rs12956045	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	18p11.21	MC5R	rs12956045-A	NR	5E-7	(BDRBASE)	0.45	[0.27-0.63] unit decrease	Illumina [NR] (imputed)	N
690	chr18	13852510	13852511	rs78202598	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	18p11.21	MC5R	rs78202598-?		1E-8				Affymetrix, Illumina [2374420] (imputed)	N
690	chr18	13852510	13852511	rs78202598	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	18p11.21	MC2R	rs78202598-G	NR	1E-8				Affymetrix, Illumina [12061510] (imputed)	N
690	chr18	13852510	13852511	rs78202598	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	18p11.21	MC2R	rs78202598-G	NR	2E-6		0.31	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
690	chr18	13886718	13886719	rs28926173	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	18p11.21	MC2R	rs28926173-G	NR	6E-6			[NR]	Affymetrix [11535925] (imputed)	N
690	chr18	13886718	13886719	rs28926173	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	18p11.21	MC2R	rs28926173-G	0.953	2E-8		0.0264	[0.017-0.036] unit decrease	Affymetrix [11535925] (imputed)	N
690	chr18	13886727	13886728	rs16941288	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs16941288-A	0.05923	1E-8	(LBP)	0.01595	NR unit increase	Illumina [1671387] (imputed)	N
691	chr18	13902203	13902204	rs114071162	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs114071162-C	0.0331	4E-9	(S100A6)	0.06766	NR unit increase	Illumina [1671387] (imputed)	N
691	chr18	13921535	13921536	rs2186945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18p11.21	NR	rs2186945-C	0.161688	2E-10		0.0248856	[0.017-0.032] unit increase	Affymetrix [16580851] (imputed)	N
691	chr18	13946751	13946755	rs139410543	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Negative urgency	22,795 European ancestry individuals	NA	18p11.21	MC2R, ZNF519	rs139410543-?	0.7447	9E-7		0.051	[0.071-0.031] unit decrease	Illumina [11434023] (imputed)	N
691	chr18	13954108	13954109	rs35505947	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, , 855 Austrian ancestry controls	NA	18p11.21	Intergenic	rs35505947-?		6E-6		1.460707	[NR]	Affymetrix [492217] (imputed)	N
691	chr18	14010930	14010931	rs71363185	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18p11.21	NR	rs71363185-?	NR	5E-6	(EA)	0.3871	[0.22-0.55] unit decrease	Illumina [up to 11892802] (imputed)	N
692	chr18	14031446	14031447	rs138108054	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18p11.21	NR	rs138108054-G	0.01742	2E-8	(SERPINF1)	0.01968	NR unit increase	Illumina [1671387] (imputed)	N
692	chr18	14150723	14150724	rs7236163	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	18p11.21	ZNF519	rs7236163-T	0.27	5E-8		2.14	[18.63-2.82]	Illumina [5378539] (imputed)	N
693	chr18	14186390	14186391	rs543143	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	18p11.21	ANKRD20A5P	rs543143-C	NR	5E-10		2.525	[1.89-3.38]	Illumina [13976150] (imputed)	N
693	chr18	14265824	14265825	rs11872104	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	18p11.21	NR	rs11872104-A	0.7921	8E-15		0.0848	[0.063-0.106] unit decrease	Illumina [~ 10600000] (imputed)	N
694	chr18	14306739	14306740	rs118122632	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	18p11.21	NR	rs118122632-C	0.059	6E-6		0.395827	[0.22-0.57] unit increase	Illumina [~ 6600000] (imputed)	N
694	chr18	14323783	14323784	rs117141423	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	18p11.21		rs117141423-G	NR	4E-6		0.529082	[0.26-0.80] unit increase	Affymetrix [825927] (imputed)	N
695	chr18	14439801	14439802	rs60712520	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	18p11.21		rs60712520-T	NR	4E-6		1.04865		Affymetrix, Illumina [62056310] (imputed)	N
695	chr18	14443240	14443241	rs145583025	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	18p11.21	NR	rs145583025-?	NR	3E-6		0.03888	[0.023-0.055] unit decrease	Affymetrix [9658292] (imputed)	N
699	chr18	15069725	15069726	rs12605904	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	18p11.21		rs12605904-T	0.15	4E-6		0.67	unit increase	Affymetrix [NR] (imputed)	N
700	chr18	15091838	15091839	rs56853567	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	18p11.21	NR	rs56853567-?		1E-7		52.5556	[33.38-71.73] unit decrease	NR [NR] (imputed)	N
700	chr18	15097276	15097277	rs540731596	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	18p11.21	ANKRD30B	rs540731596-?	NR	1E-6	(Hispanic/Latino+AfricanAmerican)	2.44	[1.69-3.45]	Affymetrix [~ 8700000] (imputed)	N
700	chr18	15182380	15182381	rs12959468	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	18p11.21	ANKRD30B, ROCK1	rs12959468-G	0.961	3E-6	(Hispanic/Latino+AfricanAmerican)	2.56	[1.72-3.85]	Affymetrix [~ 8700000] (imputed)	N
701	chr18	15318267	15318268	rs4524199	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18p11.21	ZNF519	rs4524199-?	NR	2E-6	(glutamate)	0.2042888	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
726	chr18	18542586	18542587	rs183403564	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.1	ROCK1	rs183403564-C	NR	2E-10	(LPC(14:0;0))	0.9769	[0.68-1.28] unit increase	Illumina [~ 9300000] (imputed)	N
727	chr18	18677203	18677204	rs117478007	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.1	ROCK1	rs117478007-A	NR	2E-10	(LPC(14:0;0))	0.9716	[0.67-1.27] unit increase	Illumina [~ 9300000] (imputed)	N
727	chr18	18692343	18692344	rs35996865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	18q11.1		rs35996865-G	NR	1E-11		0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
727	chr18	18692343	18692344	rs35996865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q11.1	NR	rs35996865-G	NR	1E-11		0.0215	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
727	chr18	18712213	18712214	rs111667085	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q11.1		rs111667085-G	NR	5E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
728	chr18	18818479	18818480	rs182894584	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.1	ROCK1	rs182894584-T	NR	2E-10	(LPC(14:0;0))	0.9733	[0.67-1.27] unit increase	Illumina [~ 9300000] (imputed)	N
729	chr18	18892345	18892346	rs8098861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q11.1	NR	rs8098861-C	NR	4E-10		0.0424	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
729	chr18	18994682	18994683	rs118035855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q11.1	RP11-296E23.1, GREB1L	rs118035855-A	0.018128	2E-9		0.051205847	[0.035-0.068] unit increase	Affymetrix [93095623] (imputed)	N
730	chr18	19037560	19037561	rs8086339	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.1		rs8086339-T	NR	5E-15		0.125418	[0.094-0.157] unit increase	Affymetrix [87696910] (imputed)	N
730	chr18	19037560	19037561	rs8086339	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.1	NR	rs8086339-?	NR	4E-6		0.0034	[0.0018-0.005] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
730	chr18	19091031	19091032	rs72882867	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q11.2	GREB1L	rs72882867-T	0.0429	1E-12		0.0335	[0.024-0.043] unit decrease	Affymetrix [18391927] (imputed)	N
730	chr18	19107090	19107091	rs10502435	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs10502435-?	NR	7E-7		0.0039	[0.0023-0.0055] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
730	chr18	19111214	19111215	rs139612538	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.2	ROCK1	rs139612538-T	NR	2E-10	(LPC(14:0;0))	0.988	[0.68-1.29] unit increase	Illumina [~ 9300000] (imputed)	N
730	chr18	19112738	19112739	rs12373434	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs12373434-?	NR	7E-7		0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
731	chr18	19150765	19150766	rs35924188	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q11.2	NR	rs35924188-?		4E-10				NR [7428630] (imputed)	N
731	chr18	19153493	19153494	rs973730	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs973730-C	NR	6E-16		0.126965	[0.096-0.158] unit increase	Affymetrix [87696910] (imputed)	N
731	chr18	19153493	19153494	rs973730	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs973730-?	NR	7E-7		0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
731	chr18	19154142	19154143	rs13381941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs13381941-A	NR	6E-13		0.0917727	[0.067-0.117] unit increase	Affymetrix [87696910] (imputed)	N
731	chr18	19165476	19165477	rs11662308	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs11662308-?	NR	7E-7		0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
731	chr18	19182973	19182974	rs34373167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs34373167-T	NR	6E-16		0.12715	[0.096-0.158] unit increase	Affymetrix [87696910] (imputed)	N
731	chr18	19207766	19207767	rs2850568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs2850568-G	NR	2E-13		0.093774	[0.069-0.119] unit increase	Affymetrix [87696910] (imputed)	N
731	chr18	19231654	19231655	rs181026394	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.2	ROCK1	rs181026394-G	NR	2E-9	(LPC(14:0;0))	1.0798	[0.73-1.43] unit increase	Illumina [~ 9300000] (imputed)	N
731	chr18	19257122	19257123	rs11083274	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs11083274-?	NR	1E-6		0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
731	chr18	19261412	19261413	rs11662721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs11662721-T	NR	3E-11		0.118339	[0.083-0.153] unit increase	Affymetrix [87696910] (imputed)	N
731	chr18	19261412	19261413	rs11662721	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q11.2	NR	rs11662721-?	NR	2E-6		0.0038	[0.0022-0.0054] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
731	chr18	19261412	19261413	rs11662721	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	18q11.2	ABHD3	rs11662721-?	NR	1E-8	(proportions)	0.0	[0.70-0.80] % increase	Illumina [NR] (imputed)	N
732	chr18	19271303	19271304	rs4625812	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs4625812-A	NR	3E-12		0.0898487	[0.065-0.115] unit increase	Affymetrix [87696910] (imputed)	N
732	chr18	19283205	19283206	rs73963238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine_32:2_[M+H]1+/Phosphatidylethanolamine_35:2_[M+H]1+/Phosphatidate_37:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	18q11.2		rs73963238-G	NR	3E-15		0.118946	[0.089-0.148] unit increase	Affymetrix [87696910] (imputed)	N
732	chr18	19327401	19327402	rs117723077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q11.2	MIB1	rs117723077-G	0.018456	9E-11		0.054640934	[0.038-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr18	19340096	19340097	rs192268857	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.2	ROCK1	rs192268857-T	NR	4E-10	(LPC(14:0;0))	0.9769	[0.67-1.28] unit increase	Illumina [~ 9300000] (imputed)	N
732	chr18	19346701	19346702	rs3017049	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	18q11.2	GREB1L, ESCO1, SNRPD1, ABHD3, MIB1	rs3017049-?		1E-8				NR [7428630] (imputed)	N
733	chr18	19448690	19448691	rs184701424	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.2	ROCK1	rs184701424-G	NR	2E-8	(LPC(14:0;0))	0.9476	[0.62-1.28] unit increase	Illumina [~ 9300000] (imputed)	N
733	chr18	19478154	19478155	rs8089932	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q11.2	NR	rs8089932-T	0.3088	9E-9				NR [9056863] (imputed)	N
733	chr18	19526601	19526602	rs12957049	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18q11.2	NR	rs12957049-?	NR	7E-6		0.088957526	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
734	chr18	19586239	19586240	rs9960754	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	18q11.2	MIB1, CTAGE1	rs9960754-T	0.064826	5E-6		1.07	[1.04-1.10]	NR [8126035] (imputed)	N
734	chr18	19605790	19605790	rs141844798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18q11.2		rs141844798-TG	NR	1E-12		0.0395	[0.029-0.05] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
734	chr18	19627575	19627576	rs9948417	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs9948417-?		7E-6				Illumina [4322238] (imputed)	N
734	chr18	19630280	19630281	rs12961736	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs12961736-?		4E-6				Illumina [4322238] (imputed)	N
734	chr18	19636741	19636742	rs7234041	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs7234041-?		3E-6				Illumina [4322238] (imputed)	N
734	chr18	19640349	19640350	rs79120103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	18q11.2		rs79120103-G	NR	5E-10		0.0418	[0.029-0.055] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
734	chr18	19640349	19640350	rs79120103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	18q11.2		rs79120103-G	NR	3E-8		0.0379	[0.025-0.051] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
734	chr18	19641008	19641009	rs4632228	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q11.2	RP11-595B24.2	rs4632228-G	0.790504	2E-16		0.0198726	[0.015-0.025] unit increase	Affymetrix [NR] (imputed)	N
734	chr18	19647941	19647942	rs16962746	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs16962746-?		8E-8				Illumina [4322238] (imputed)	N
734	chr18	19648965	19648966	rs55963725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	18q11.2		rs55963725-G	0.765707	3E-9		0.0291005	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
734	chr18	19654136	19654137	rs4800353	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	18q11.2	NR	rs4800353-T	0.864	3E-7		1.22	[1.14-1.32]	Illumina [922031]	N
734	chr18	19658459	19658460	rs4800356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	18q11.2		rs4800356-T	NR	2E-8		0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
734	chr18	19658459	19658460	rs4800356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q11.2	RP11-595B24.2	rs4800356-C	0.710668	2E-12		0.0155879	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
734	chr18	19659464	19659465	rs34157981	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs34157981-?		7E-6				Illumina [4322238] (imputed)	N
735	chr18	19684118	19684119	rs7235882	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q11.2		rs7235882-T	NR	6E-10		0.0201	[0.014-0.026] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
735	chr18	19699121	19699122	rs7231555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q11.2		rs7231555-G	0.087723	3E-17		0.033129584	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr18	19709885	19709886	rs28631485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q11.2	RNU6ATAC20P	rs28631485-C	0.0798640000000001	8E-11		0.02689765	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
735	chr18	19709885	19709886	rs28631485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs28631485-C	0.106999	1E-12				Affymetrix, Illumina [23467995] (imputed)	N
735	chr18	19709977	19709981	rs796292934	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q11.2	NR	rs796292934-I	0.082411	1E-13		0.028373	[0.021-0.036] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
735	chr18	19709981	19709981	rs138166261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	18q11.2	RNU6ATAC20P	rs138166261-TTC	0.0823270000000001	2E-10		0.026229754	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
735	chr18	19709981	19709981	rs138166261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q11.2	RNU6ATAC20P	rs138166261-TTC	0.08234	2E-11		0.027415225	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
735	chr18	19710332	19710333	rs4006418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q11.2		rs4006418-T	NR	1E-12		0.0243	[0.018-0.031] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
735	chr18	19710332	19710333	rs4006418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs4006418-T	0.114012	8E-14				Affymetrix, Illumina [23114412] (imputed)	N
736	chr18	19807070	19807071	rs12709669	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	18q11.2	GATA6	rs12709669-?	NR	8E-10				Affymetrix [up to 7325140] (imputed)	N
736	chr18	19816711	19816712	rs1985511	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	GATA6	rs1985511-A	0.4503	6E-12		0.0165	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
736	chr18	19816711	19816712	rs1985511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q11.2		rs1985511-?	NR	1E-9				NR [~ 8900000] (imputed)	N
736	chr18	19819324	19819325	rs766320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	GATA6	rs766320-T	0.58286	2E-8	(-28 ms)	0.0318519	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
736	chr18	19819324	19819325	rs766320	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	GATA6	rs766320-T	0.58286	2E-8	(-26 ms)	0.0314901	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
736	chr18	19837759	19837760	rs8091414	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	18q11.2	LOC105372018	rs8091414-?	NR	9E-6	(docosahexaenoic fatty acid)			Illumina [621723]	N
736	chr18	19843955	19843956	rs561726060	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	18q11.2	GATA6	rs561726060-T	0.007090000000000041	8E-6		1.68	[1.34-2.12]	Affymetrix, Illumina [~ 11700000] (imputed)	N
736	chr18	19843955	19843956	rs561726060	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	18q11.2	GATA6	rs561726060-T	0.01	5E-7		1.66	[1.36-2.02]	Affymetrix, Illumina [~ 11700000] (imputed)	N
736	chr18	19896116	19896117	rs35292873	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q11.2		rs35292873-G	0.472631	3E-8		0.0227198	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
736	chr18	19898815	19898816	rs11662649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	18q11.2		rs11662649-T	0.470607	1E-8		0.0229378	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
736	chr18	19898815	19898816	rs11662649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q11.2		rs11662649-T	0.470607	2E-8		0.0223061	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
736	chr18	19898815	19898816	rs11662649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	18q11.2		rs11662649-T	0.470607	4E-8		0.0215869	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
736	chr18	19904143	19904144	rs9958656	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	18q11.2		rs9958656-T	0.43	4E-17		1.11	[1.08-1.13]	Affymetrix, Illumina [42907111] (imputed)	N
736	chr18	19904143	19904144	rs9958656	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	18q11.2	GATA6	rs9958656-T	0.43	3E-18		1.11	[1.08-1.13]	Affymetrix, Illumina [42907111] (imputed)	N
736	chr18	19907769	19907770	rs79588679	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	18q11.2	GATA6	rs79588679-T	0.17	4E-8		0.049	[0.031-0.067] s.d. decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
736	chr18	19908496	19908497	rs4800392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q11.2		rs4800392-C	0.465824	3E-9		0.023441	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
736	chr18	19908496	19908497	rs4800392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	18q11.2		rs4800392-C	0.465824	1E-9		0.0241199	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
736	chr18	19908496	19908497	rs4800392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q11.2		rs4800392-C	0.465824	1E-8		0.0225397	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
736	chr18	19908496	19908497	rs4800392	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	18q11.2		rs4800392-C	0.465824	2E-9		0.023417	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
736	chr18	19908496	19908497	rs4800392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q11.2		rs4800392-?	NR	5E-8				NR [~ 8900000] (imputed)	N
736	chr18	19910183	19910184	rs9963938	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q11.2	intergenic	rs9963938-C	0.4413	8E-9		0.0162	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
736	chr18	19910948	19910949	rs4800395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	18q11.2		rs4800395-C	NR	2E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
736	chr18	19911689	19911690	rs867939	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q11.2	CTAGE1	rs867939-G	0.423793	9E-12		0.0138475	[0.0099-0.0178] unit increase	Affymetrix [NR] (imputed)	N
736	chr18	19918359	19918360	rs1385605488	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Lysophosphatidylcholine levels	2,045 European ancestry individuals	NA	18q11.2	ROCK1	rs1385605488-A	NR	3E-8	(LPC(14:0;0))	1.0395	[0.67-1.41] unit increase	Illumina [~ 9300000] (imputed)	N
737	chr18	19998809	19998810	rs948386	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	18q11.2	CTAGE1	rs948386-?	NR	8E-13		0.0360995	[0.026-0.046] unit increase	Illumina [4804024] (imputed)	N
737	chr18	20001348	20001349	rs12953322	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	18q11.2	ATP7BP1	rs12953322-?	NR	8E-8		32.246	[20.46-44.03] mm3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
737	chr18	20002943	20002944	rs1893250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	18q11.2		rs1893250-C	NR	2E-10		0.0563	[0.039-0.074] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
737	chr18	20002943	20002944	rs1893250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	18q11.2		rs1893250-C	NR	2E-10		0.0523	[0.036-0.069] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
737	chr18	20003624	20003625	rs4800401	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	18q11.2	CTAGE1	rs4800401-T	0.582	4E-7		0.033	[0.021-0.045] unit increase	Affymetrix [7947838] (imputed)	N
737	chr18	20009690	20009691	rs9951447	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	18q11.2	CTAGE1, LOC101927571	rs9951447-?	NR	5E-9		0.0586123	[0.039-0.078] unit increase	Illumina [19707525] (imputed)	N
737	chr18	20009690	20009691	rs9951447	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q11.2	NR	rs9951447-T	0.603904	2E-8		0.0114096	[0.0075-0.0154] unit increase	NR [NR]	N
737	chr18	20010240	20010241	rs4800123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q11.2		rs4800123-?	NR	1E-19				NR [~ 8900000] (imputed)	N
737	chr18	20015974	20015975	rs10502431	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	18q11.2	CTAGE1	rs10502431-C	0.21	2E-6	(men)	0.087	[0.052-0.122] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
737	chr18	20028736	20028737	rs9960286	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18q11.2	GATA6	rs9960286-G	0.242931257775548	7E-8		0.0033679	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
737	chr18	20033164	20033165	rs12457603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q11.2		rs12457603-?	NR	5E-11				NR [~ 8900000] (imputed)	N
737	chr18	20034016	20034017	rs17670370	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	18q11.2		rs17670370-G	0.262	5E-6		1.06	[1.04,1.09]	Affymetrix, Illumina [42907111] (imputed)	N
737	chr18	20034016	20034017	rs17670370	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	18q11.2	CTAGE1	rs17670370-G	0.262	5E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [42907111] (imputed)	N
737	chr18	20037596	20037597	rs3813127	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	18q11.2	intergenic	rs3813127-A	0.7292	2E-6		0.0337	[0.02-0.048] unit decrease	NR [8041861] (imputed)	N
737	chr18	20040224	20040225	rs518897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18q11.2		rs518897-T	NR	5E-11		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
737	chr18	20045453	20045454	rs16967483	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Foot deformity in Charcot-Marie-Tooth disease 1A	368 European ancestry severe cases, 49 European ancestry mild cases	NA	18q11.2	NR	rs16967483-?		8E-7				Illumina [600000]	N
737	chr18	20048162	20048163	rs35236676	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	CTAGE1	rs35236676-T	0.602106	5E-9	(-18 ms)	0.0327223	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
737	chr18	20048162	20048163	rs35236676	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	CTAGE1	rs35236676-T	0.602106	4E-9	(-20 ms)	0.0317351	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
738	chr18	20063203	20063204	rs177992	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q11.2	intergenic	rs177992-A	0.3544	2E-9		0.1226	[0.082-0.163] mmHg decrease	Affymetrix [NR] (imputed)	N
738	chr18	20076142	20076143	rs636261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q11.2		rs636261-C	0.258444	3E-9		0.01534086	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
738	chr18	20084673	20084674	rs473518	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	18q11.2	intergenic	rs473518-?	0.88	9E-6		1.2	[1.11-1.32]	Affymetrix, Illumina [~ 2300000] (imputed)	N
738	chr18	20084816	20084817	rs178004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q11.2		rs178004-C	0.258754	6E-12		0.01771038	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
738	chr18	20104981	20104982	rs476382	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	18q11.2	CTAGE1	rs476382-G	0.77	2E-11		1.4285715	[NR]	Illumina [747089]	N
738	chr18	20105561	20105562	rs178010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs178010-T	0.240601	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
738	chr18	20119263	20119264	rs111885617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q11.2	NR	rs111885617-A	0.020936	2E-9		0.04810985	[0.032-0.064] unit increase	Affymetrix [93095623] (imputed)	N
738	chr18	20129523	20129524	rs117159291	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	18q11.2	CTAGE1, GATA6	rs117159291-C	0.05	1E-7		0.4038	[0.25-0.55] unit increase	Affymetrix [19941912] (imputed)	N
738	chr18	20131589	20131590	rs113124813	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	18q11.2		rs113124813-?	NR	6E-10		1.3799	[0.94-1.82] unit increase	Affymetrix [NR] (imputed)	N
738	chr18	20148530	20148531	rs7243351	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2		rs7243351-?	NR	3E-6		12.12	[7.06-17.18] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
738	chr18	20148530	20148531	rs7243351	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2	CTAGE1, RBBP8	rs7243351-T	0.5	4E-7	(EA)	14.09	[8.64-19.54] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
738	chr18	20148530	20148531	rs7243351	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2	CTAGE1, RBBP8	rs7243351-T	0.45	5E-8		12.31	[7.9-16.72] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
738	chr18	20158964	20158965	rs4800420	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q11.2	CTAGE1	rs4800420-A	0.2944	2E-11		0.1114	[0.079-0.144] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
738	chr18	20171053	20171054	rs4330012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18q11.2		rs4330012-G	NR	5E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
739	chr18	20185430	20185431	rs8087799	27418160	van 't Hof FN	2016-07-14	J Am Heart Assoc	Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms.	Intracranial, abdominal aortic or thoracic aortic aneurysm (pleiotropy)	1,516 European ancestry intracranial aneurysm cases, 818 European ancestry abdominal aortic aneurysm cases, 760 European ancestry thoracic aortic aneurysm cases, 9,507 European ancestry controls	NA	18q11.2	RBBP8	rs8087799-A	0.324	2E-9		1.21	[1.15-1.27]	Illumina [9245988] (imputed)	N
739	chr18	20188355	20188356	rs4530258	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs4530258-?		2E-6				Illumina [4322238] (imputed)	N
739	chr18	20190794	20190795	rs4331426	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls, (see Thye 2010)	NA	18q11.2	NR	rs4331426-?	NR	2E-8	(binary model)			Affymetrix [1009364] (imputed)	N
739	chr18	20190794	20190795	rs4331426	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	18q11.2	RBBP8, CABLES1, GATA6, CTAGE1	rs4331426-G	0.48	7E-9		1.19	[1.10-1.30]	Affymetrix [> 333754] (imputed)	N
739	chr18	20193667	20193668	rs4401144	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	18q11.2	CTAGE1	rs4401144-T	0.4831	4E-14		1.11	1.08-1.14	Affymetrix [18689289] (imputed)	N
739	chr18	20223694	20223695	rs11661542	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	18q11.2	NR	rs11661542-A	0.5157	6E-16		0.1659	[0.13-0.21] unit decrease	Affymetrix, Illumina [4471083] (imputed)	N
739	chr18	20223694	20223695	rs11661542	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	18q11.2	NR	rs11661542-A	0.471	3E-17		0.135	[0.1-0.17] unit decrease	Affymetrix, Illumina [3527309] (imputed)	N
739	chr18	20223694	20223695	rs11661542	20364137	Yasuno K	2010-04-04	Nat Genet	Genome-wide association study of intracranial aneurysm identifies three new risk loci.	Intracranial aneurysm	2,780 European ancestry cases, 12,515 European ancestry controls	3,111 Japanese ancestry cases, 1,666 Japanese ancestry controls	18q11.2	RBBP8	rs11661542-C	0.49	1E-12		1.22	[1.15-1.28]	Illumina [831534] (imputed)	N
739	chr18	20234335	20234336	rs11082051	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	CTAGE1/RBBP8	rs11082051-A	0.5298	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix [19819130] (imputed)	N
739	chr18	20264184	20264185	rs11082082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q11.2		rs11082082-?	NR	1E-9				NR [~ 8900000] (imputed)	N
740	chr18	20327879	20327880	rs7242046	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q11.2	NR	rs7242046-G	0.115	4E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
740	chr18	20338050	20338051	rs11661028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs11661028-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
740	chr18	20395103	20395104	rs4578769	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	18q11.2	RBBP8, RP11-370A5.1, RP11-739L10.1	rs4578769-T	0.7491	8E-9		0.0237202	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
740	chr18	20414636	20414637	rs147341604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q11.2		rs147341604-C	NR	1E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
741	chr18	20461321	20461322	rs3851820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q11.2	RP11-370A5.1, RBBP8, RP11-739L10.1	rs3851820-T	0.743879	3E-9		0.015081895	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
741	chr18	20461321	20461322	rs3851820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs3851820-T	0.699825	1E-14				Affymetrix, Illumina [23472807] (imputed)	N
741	chr18	20461321	20461322	rs3851820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	18q11.2	NR	rs3851820-T	0.744961	7E-16		0.017551	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
741	chr18	20464170	20464171	rs8085287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q11.2		rs8085287-?	NR	3E-8				NR [~ 8900000] (imputed)	N
741	chr18	20477933	20477934	rs12962334	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	18q11.2	NR	rs12962334-?	NR	4E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
741	chr18	20477933	20477934	rs12962334	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	18q11.2	NR	rs12962334-G	0.32	4E-9		1.04	[1.03-1.05]	Illumina [~ 10800000] (imputed)	N
741	chr18	20477933	20477934	rs12962334	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	NR	rs12962334-C	0.678	1E-6	(EA)	0.0324	[0.019-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
741	chr18	20489036	20489037	rs3898593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q11.2		rs3898593-C	NR	2E-9		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
741	chr18	20490871	20490872	rs72885774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	RP11-739L10.1, RBBP8	rs72885774-G	NR	2E-9		0.0244998	[0.016-0.033] unit decrease	Affymetrix [321114] (imputed)	N
741	chr18	20490871	20490872	rs72885774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	RP11-739L10.1, RBBP8	rs72885774-G	NR	2E-10		0.028426	[0.02-0.037] unit decrease	Affymetrix [321114] (imputed)	N
741	chr18	20490871	20490872	rs72885774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs72885774-?	NR	6E-20				Affymetrix [~ 8270000] (imputed)	N
741	chr18	20514271	20514272	rs62095167	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q11.2	NR	rs62095167-C	0.108	3E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
742	chr18	20580533	20580534	rs112104755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q11.2	NR	rs112104755-A	NR	9E-6				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20580533	20580534	rs112104755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs112104755-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20580533	20580534	rs112104755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	18q11.2	NR	rs112104755-A	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20580533	20580534	rs112104755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	18q11.2	NR	rs112104755-A	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20585398	20585399	rs113047993	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	18q11.2	RBBP8	rs113047993-T	0.068	1E-8		0.858	[0.813-0.904]	Affymetrix [7871717] (imputed)	N
742	chr18	20585398	20585399	rs113047993	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	18q11.2	NR	rs113047993-C	0.931016	9E-9		0.00966159	[0.0064-0.013] unit increase	Affymetrix [16582268] (imputed)	N
742	chr18	20587910	20587911	rs9963862	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	18q11.2	RBBP8	rs9963862-G	0.34	4E-7		1.44	[1.25-1.66]	Illumina [6175472] (imputed)	N
742	chr18	20603828	20603829	rs77215146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	RBBP8	rs77215146-A	NR	5E-8		0.038984	[0.025-0.053] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20618211	20618212	rs11873162	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q11.2	NR	rs11873162-?	NR	1E-7				Affymetrix [NR]	N
742	chr18	20619728	20619729	rs111529616	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	18q11.2		rs111529616-G	0.938042	7E-6		0.0176935	[0.01-0.025] unit increase	Illumina [13900000] (imputed)	N
742	chr18	20624222	20624223	rs7236869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q11.2		rs7236869-?	NR	3E-14				NR [~ 8900000] (imputed)	N
742	chr18	20625139	20625140	rs4800446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs4800446-T	0.594895	5E-14				Affymetrix, Illumina [19872809] (imputed)	N
742	chr18	20627690	20627691	rs9675999	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	NR	rs9675999-A	0.6392	7E-7	(EA)	0.0319	[0.019-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
742	chr18	20632276	20632280	rs34698825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q11.2		rs34698825-G	0.66848	4E-20		0.022059482	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
742	chr18	20632276	20632280	rs34698825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q11.2		rs34698825-G	0.668492	4E-14		0.018167207	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
742	chr18	20632276	20632276	rs765609192	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q11.2	NR	rs765609192-D	0.668116	8E-16		0.017861	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
742	chr18	20647585	20647586	rs58596743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	RBBP8	rs58596743-G	NR	8E-9		0.018729	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20647585	20647586	rs58596743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	RBBP8	rs58596743-G	NR	2E-9		0.0212846	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20647585	20647586	rs58596743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	RBBP8	rs58596743-G	NR	3E-10		0.0221368	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
742	chr18	20649183	20649184	rs79342110	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs79342110-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20655634	20655635	rs9954436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	RBBP8	rs9954436-C	NR	2E-8		0.034906	[0.023-0.047] unit decrease	Affymetrix [323123] (imputed)	N
742	chr18	20663833	20663834	rs4493170	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs4493170-A	NR	4E-14		0.0444164	[0.033-0.056] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20663833	20663834	rs4493170	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs4493170-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20665944	20665945	rs117094190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs117094190-C	NR	1E-8		0.0429731	[0.028-0.058] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20669359	20669360	rs8088319	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q11.2	CABLES1	rs8088319-A	0.0619	3E-8		0.0742	[0.048-0.1] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
742	chr18	20672554	20672555	rs8098316	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q11.2	NR	rs8098316-?	NR	6E-6		0.02887046	[0.016-0.041] unit increase	Illumina [34656550] (imputed)	N
742	chr18	20672554	20672555	rs8098316	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	18q11.2	RBBP8	rs8098316-T	0.18	7E-23		0.052	[0.038-0.066] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
742	chr18	20681352	20681353	rs60048129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs60048129-G	NR	2E-11		0.0191872	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
742	chr18	20683092	20683093	rs6507498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs6507498-T	NR	2E-9		0.0298756	[0.02-0.04] unit decrease	Affymetrix [321169] (imputed)	N
742	chr18	20684688	20684689	rs12962504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1	rs12962504-A	NR	4E-9		0.0402438	[0.027-0.054] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20684688	20684689	rs12962504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs12962504-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20684940	20684941	rs7240317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs7240317-G	NR	8E-10		0.023033	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20689090	20689091	rs12019129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1	rs12019129-G	NR	3E-10		0.0341795	[0.024-0.045] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20705119	20705120	rs4575632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs4575632-G	NR	6E-13		0.0355465	[0.026-0.045] unit decrease	Affymetrix [321016] (imputed)	N
742	chr18	20705119	20705120	rs4575632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	CABLES1	rs4575632-G	NR	9E-10		0.033213	[0.023-0.044] unit decrease	Affymetrix [323123] (imputed)	N
742	chr18	20705309	20705310	rs4281829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs4281829-G	NR	4E-18		0.0432514	[0.033-0.053] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20706620	20706621	rs62093409	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs62093409-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20707375	20707376	rs56875112	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs56875112-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
742	chr18	20707621	20707622	rs4310973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q11.2		rs4310973-?	NR	6E-21				NR [~ 8900000] (imputed)	N
742	chr18	20707621	20707622	rs4310973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q11.2		rs4310973-?	NR	2E-17				NR [~ 8900000] (imputed)	N
742	chr18	20707743	20707744	rs8083210	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	18q11.2	CABLES1	rs8083210-C	0.8049	8E-7		0.0407	[0.025-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
742	chr18	20707972	20707972	rs79607252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs79607252-G	NR	3E-36		0.0439724	[0.037-0.051] unit decrease	Affymetrix [321114] (imputed)	N
742	chr18	20707972	20707972	rs79607252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs79607252-G	NR	3E-14		0.0265593	[0.02-0.033] unit decrease	Affymetrix [321169] (imputed)	N
742	chr18	20708320	20708321	rs9947743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs9947743-G	NR	9E-9		0.0199037	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
742	chr18	20708320	20708321	rs9947743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs9947743-G	NR	4E-11		0.0229473	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
742	chr18	20708320	20708321	rs9947743	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	CABLES1	rs9947743-A	0.7867	1E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
742	chr18	20708320	20708321	rs9947743	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	CABLES1	rs9947743-A	0.7867	1E-12		0.0202	[0.015-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
743	chr18	20711341	20711341	rs11410840	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs11410840-C	NR	3E-26		0.0354673	[0.029-0.042] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20711926	20711927	rs60839038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q11.2		rs60839038-C	NR	4E-17		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
743	chr18	20711926	20711927	rs60839038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	18q11.2		rs60839038-C	0.424295	5E-10		0.0221354	[0.015-0.029] unit decrease	Illumina [13479091] (imputed)	N
743	chr18	20711926	20711927	rs60839038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q11.2		rs60839038-C	NR	3E-10		0.0136	[0.0093-0.0179] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
743	chr18	20711926	20711927	rs60839038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q11.2	CABLES1	rs60839038-C	0.474394	9E-11		0.014633732	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr18	20713214	20713215	rs8096254	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	18q11.2	CABLES1	rs8096254-A	0.2598	4E-12		0.005295192	[0.0038-0.0068] m increase	Illumina [24111857] (imputed)	N
743	chr18	20715655	20715656	rs113232639	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q11.2	CABLES1	rs113232639-A	0.493	5E-64		0.0327	[0.029-0.036] unit increase	Affymetrix [18391927] (imputed)	N
743	chr18	20715655	20715656	rs113232639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q11.2	CABLES1	rs113232639-A	0.492846	8E-52		0.03480064	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr18	20715655	20715656	rs113232639	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs113232639-A	0.471397	6E-18				Affymetrix, Illumina [23467995] (imputed)	N
743	chr18	20715655	20715656	rs113232639	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q11.2	NR	rs113232639-A	0.488643	6E-19		0.017678	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
743	chr18	20716804	20716805	rs4800451	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	18q11.2	CABLES1, MIR4741, RBBP8, TMEM241	rs4800451-?	NR	6E-6				Illumina [9143600] (imputed)	N
743	chr18	20716961	20716962	rs145585609	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	18q11.2	CABLES1	rs145585609-A	0.013514	9E-6		1.344915	[0.75-1.94] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
743	chr18	20719163	20719164	rs12327253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q11.2	CABLES1	rs12327253-G	0.287914	4E-14		0.018829407	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
743	chr18	20720402	20720403	rs11358415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q11.2		rs11358415-C	NR	9E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q11.2		rs11082304-T	NR	5E-134		0.0467	[0.043-0.05] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	18q11.2		rs11082304-T	0.525381	1E-26		0.0354627	[0.029-0.042] unit decrease	Illumina [13478928] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	18q11.2		rs11082304-T	0.410474	3E-14		2.9362907	[2.18-3.69] unit decrease	NR [NR]	N
743	chr18	20720972	20720973	rs11082304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	18q11.2		rs11082304-G	0.487	2E-17				Affymetrix [10369434] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	18q11.2		rs11082304-G	0.487	3E-80				Affymetrix [10369434] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	18q11.2		rs11082304-T	0.6346	1E-7		0.0537	[0.034-0.074] unit increase	Affymetrix, Illumina [NR] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs11082304-G	NR	2E-15		0.0227162	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1	rs11082304-G	NR	2E-10		0.0196294	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs11082304-G	NR	2E-10		0.0179349	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20720972	20720973	rs11082304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	CABLES1	rs11082304-G	NR	5E-10		0.0190798	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q11.2	CABLES1	rs11082304-T	0.512477	1E-63		0.037997942	[0.034-0.042] unit increase	Affymetrix [93095623] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q11.2	CABLES1	rs11082304-T	0.512526	3E-113		0.051080495	[0.047-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q11.2	CABLES1	rs11082304-T	0.512518	4E-82		0.04317426	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs11082304-T	0.501781	6E-195				Affymetrix, Illumina [24588908] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q11.2	NR	rs11082304-T	0.505207	2E-170		0.05171	[0.048-0.055] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	18q11.2	NR	rs11082304-G	0.475224	5E-27		0.039952	[0.033-0.047] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs11082304-G	0.496182	9E-112				Affymetrix, Illumina [17210439] (imputed)	N
743	chr18	20720972	20720973	rs11082304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q11.2	NR	rs11082304-G	0.487951	1E-115		0.04399	[0.04-0.048] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
743	chr18	20720972	20720973	rs11082304	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q11.2	CABLES1	rs11082304-?	NR	2E-8		0.018531237	[0.012-0.025] unit increase	Illumina [27896057] (imputed)	N
743	chr18	20720972	20720973	rs11082304	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	18q11.2	NR	rs11082304-?	NR	3E-8		3.006085	[1.94-4.07] unit decrease	Illumina [30743395] (imputed)	N
743	chr18	20720972	20720973	rs11082304	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	18q11.2	NR	rs11082304-T	0.49	3E-10		0.02	[0.014-0.026] z score increase	Affymetrix [up to 10400000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	18q11.2	CABLES1	rs11082304-T	0.508292	4E-10		0.015966	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
743	chr18	20720972	20720973	rs11082304	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	18q11.2	CABLES1	rs11082304-?	NR	1E-19		0.03845	[0.03-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
743	chr18	20720972	20720973	rs11082304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q11.2	CABLES1	rs11082304-T	0.5125	9E-22		0.0351008	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	18q11.2	CABLES1	rs11082304-T	0.5125	6E-30		0.04086074	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	18q11.2	CABLES1	rs11082304-T	0.5126	8E-44		0.05067095	[0.044-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q11.2	CABLES1	rs11082304-T	0.5125	2E-33		0.0436094	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	18q11.2	CABLES1	rs11082304-T	NR	5E-6		3.49	[NR] unit decrease	Illumina [476395]	N
743	chr18	20720972	20720973	rs11082304	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	18q11.2	CABLES1	rs11082304-T	0.5	5E-15		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	18q11.2	CABLES1	rs11082304-G	NR	5E-11		2.48	[1.74-3.22] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
743	chr18	20720972	20720973	rs11082304	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	18q11.2	CABLES1	rs11082304-?	0.49	6E-6	(SMKAGE)	0.03	[NR] years decrease	Illumina [~ 518000]	N
743	chr18	20724327	20724328	rs4800148	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q11.2	NR	rs4800148-?	NR	5E-13		0.0454303	[0.033-0.058] unit increase	Illumina [34656550] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q11.2	CABLES1	rs4800148-G	0.218272	2E-25	(females)	0.03893	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q11.2	CABLES1	rs4800148-G	0.218272	2E-10		0.01852	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q11.2	CABLES1	rs4800148-G	0.218272	9E-21	(females)	0.03475	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q11.2	CABLES1	rs4800148-G	0.218272	1E-7		0.01493	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q11.2	NR	rs4800148-?	NR	5E-12	(male)	0.29096	[0.21-0.37] unit increase	Affymetrix [7794483] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q11.2	NR	rs4800148-?	NR	3E-25		0.27668	[0.22-0.33] unit increase	Affymetrix [7794483] (imputed)	N
743	chr18	20724327	20724328	rs4800148	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q11.2	NR	rs4800148-?	NR	1E-18	(female)	0.25707	[0.2-0.31] unit increase	Affymetrix [7794483] (imputed)	N
743	chr18	20724327	20724328	rs4800148	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q11.2	CABLES1	rs4800148-A	0.7981	2E-19		0.0715	[0.056-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr18	20724327	20724328	rs4800148	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	18q11.2	RBBP8, CABLES1, C18orf45	rs4800148-A	0.79	4E-9		6.4	[4.24-8.56] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
743	chr18	20724809	20724810	rs7235010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q11.2		rs7235010-A	NR	4E-206		0.0473	[0.044-0.05] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
743	chr18	20724809	20724810	rs7235010	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	18q11.2	NR	rs7235010-A	0.77	8E-18		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
743	chr18	20724809	20724810	rs7235010	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	18q11.2	NR	rs7235010-A	0.77	5E-8				Affymetrix [2446094] (imputed)	N
743	chr18	20727610	20727611	rs4800452	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q11.2	NR	rs4800452-?	NR	6E-15		0.048256	[0.036-0.06] unit increase	Illumina [34656550] (imputed)	N
743	chr18	20727610	20727611	rs4800452	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	18q11.2	NR	rs4800452-T	0.7724	2E-18		0.0182	[0.014-0.022] unit increase	NR [~ 27400000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	18q11.2	CABLES1	rs4800452-T	0.8038	7E-7		0.0501	[0.03-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4800452-T	0.7856	4E-11	(EA, men)	0.0498	[0.035-0.065] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4800452-T	0.7822	2E-11	(men)	0.05	[0.035-0.065] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4800452-T	0.7773	1E-17		0.0427	[0.033-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4800452-?	0.7873	4E-11	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4800452-?	0.7873	1E-17	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4800452-?	0.7773	2E-11	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20727610	20727611	rs4800452	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q11.2	CABLES1	rs4800452-T	0.79	4E-30		0.051	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
743	chr18	20728048	20728049	rs7237942	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q11.2	CABLES1	rs7237942-A	0.213039	2E-13		0.016697	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
743	chr18	20728157	20728158	rs7238093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1	rs7238093-A	NR	1E-34		0.0463915	[0.039-0.054] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20728157	20728158	rs7238093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs7238093-?	NR	2E-75				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20728157	20728158	rs7238093	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2	CABLES1	rs7238093-A	0.22	7E-9		18.15	[12.02-24.28] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
743	chr18	20728157	20728158	rs7238093	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2	CABLES1	rs7238093-A	0.13	5E-6	(African)	59.74	[34.01-85.47] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
743	chr18	20728157	20728158	rs7238093	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q11.2		rs7238093-?	NR	2E-7		14.11	[8.76-19.46] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
743	chr18	20730711	20730712	rs9675924	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	18q11.2	ROCK1	rs9675924-A	0.129	2E-6		0.171	[0.101-0.241] unit decrease	Affymetrix [7519176] (imputed)	N
743	chr18	20731929	20731930	rs4239436	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	CABLES1	rs4239436-A	NR	3E-25		0.0391272	[0.032-0.047] unit decrease	Affymetrix [323123] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.794	3E-20		0.0398	[0.031-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.794	2E-12	(women)	0.0453	[0.033-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7888999999999999	4E-9	(EA, women)	0.0353	[0.024-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7888999999999999	2E-18	(EA)	0.0397	[0.031-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7888999999999999	2E-11	(EA, men)	0.0455	[0.032-0.059] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7952	2E-11	(women)	0.0491	[0.035-0.064] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7899	1E-9	(EA,women)	0.0408	[0.028-0.054] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q11.2	CABLES1	rs4239436-G	0.7888999999999999	4E-17	(EA)	0.0442	[0.034-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-?	0.794	1E-18				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4239436-?	0.7888999999999999	2E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	1E-7		0.0474	[0.03-0.065] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	6E-11	(women)	0.0395	[0.028-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	3E-19		0.0427	[0.033-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	1E-11	(men)	0.048	[0.034-0.062] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	5E-24				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	4E-14	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	4E-13	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	9E-13	(women)	0.0393	[0.029-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	8E-14	(men)	0.0455	[0.034-0.057] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	CABLES1	rs4239436-A	0.2027	2E-22		0.0418	[0.033-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
743	chr18	20731929	20731930	rs4239436	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4239436-A	0.2101	1E-22	(EA)	0.0405	[0.032-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20731929	20731930	rs4239436	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4239436-A	0.2101	1E-14	(EA, men)	0.045	[0.034-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20731929	20731930	rs4239436	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4239436-A	0.2101	1E-11	(EA,women)	0.0364	[0.026-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20735407	20735408	rs4369779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	18q11.2		rs4369779-C	0.797167	9E-73		0.0452587	[0.04-0.05] unit increase	Illumina [13479295] (imputed)	N
743	chr18	20735407	20735408	rs4369779	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q11.2	CABLES1	rs4369779-?	NR	2E-76		0.065750174	[0.059-0.073] unit increase	Illumina [27896057] (imputed)	N
743	chr18	20735407	20735408	rs4369779	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q11.2	NR	rs4369779-?	NR	3E-16		0.05399008	[0.041-0.067] unit increase	Illumina [34656550] (imputed)	N
743	chr18	20735407	20735408	rs4369779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs4369779-?	NR	3E-273				NR [~ 8900000] (imputed)	N
743	chr18	20735407	20735408	rs4369779	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q11.2		rs4369779-?	NR	3E-17		0.0206034	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18q11.2	CABLES1	rs4369779-C	0.79	7E-7		0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4369779-T	0.2096	6E-11	(EA, women)	0.0363	[0.025-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4369779-T	0.2096	3E-15	(EA)	0.0345	[0.026-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	CABLES1	rs4369779-T	0.2096	2E-7	(EA,men)	0.0328	[0.02-0.045] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	18q11.2	CABLES1	rs4369779-T	0.17	5E-24		0.53	[0.52-0.54] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
743	chr18	20735407	20735408	rs4369779	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	18q11.2	CABLES1	rs4369779-T	0.207	2E-53		0.056	[0.048-0.064] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
743	chr18	20735407	20735408	rs4369779	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	18q11.2	CABLES1	rs4369779-T	0.20	3E-6		0.06	[0.04-0.08] cm decrease	Illumina [420885]	N
743	chr18	20735460	20735461	rs4308051	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4308051-G	0.7946	4E-12	(men)	0.0449	[0.032-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20735460	20735461	rs4308051	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q11.2	CABLES1	rs4308051-?	0.7946	9E-12	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
743	chr18	20735460	20735461	rs4308051	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18q11.2	NR	rs4308051-G	0.795	5E-6	(EA)	0.055	[0.031-0.079] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
743	chr18	20741134	20741135	rs79421398	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	18q11.2	CABLES1	rs79421398-C	0.049231633	3E-7		1.233339	[1.138544749-1.336025559]	Illumina [10439017] (imputed)	N
743	chr18	20744253	20744254	rs4800149	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	18q11.2	CABLES1	rs4800149-?	NR	7E-8	(African)			Illumina [4404269] (imputed)	N
743	chr18	20744253	20744254	rs4800149	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q11.2	CABLES1	rs4800149-C	0.1589	1E-7	(African)			Illumina [4404269] (imputed)	N
743	chr18	20744657	20744658	rs10853502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	18q11.2	CABLES1	rs10853502-T	NR	9E-9		0.022597	[0.015-0.03] unit decrease	Affymetrix [127266] (imputed)	N
743	chr18	20745067	20745068	rs118027429	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	18q11.2		rs118027429-C	0.955	1E-9				Affymetrix [10369434] (imputed)	N
743	chr18	20746727	20746728	rs8094261	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18q11.2	NR	rs8094261-C	0.7942	6E-18		0.0187	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
743	chr18	20747873	20747874	rs7244739	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q11.2	NR	rs7244739-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20747873	20747874	rs7244739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q11.2		rs7244739-?	NR	1E-16				NR [~ 8900000] (imputed)	N
743	chr18	20751454	20751455	rs55981836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs55981836-G	NR	1E-10		0.045537	[0.032-0.059] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20751454	20751455	rs55981836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs55981836-G	NR	5E-10		0.0436551	[0.03-0.057] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20751454	20751455	rs55981836	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs55981836-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20758309	20758310	rs34302357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs34302357-G	NR	4E-8		0.0200629	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
743	chr18	20758309	20758310	rs34302357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1	rs34302357-G	NR	4E-22		0.0354859	[0.028-0.043] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20758309	20758310	rs34302357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1	rs34302357-G	NR	7E-13		0.0261302	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20758309	20758310	rs34302357	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	18q11.2	CABLES1	rs34302357-?		6E-52				Illumina [9499600] (imputed)	N
743	chr18	20758309	20758310	rs34302357	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	18q11.2	CABLES1	rs34302357-G	0.184	3E-80	(height)	0.0422	[0.038-0.047] unit decrease	Illumina [9499600] (imputed)	N
743	chr18	20771129	20771130	rs4800151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q11.2		rs4800151-?	NR	8E-16				NR [~ 8900000] (imputed)	N
743	chr18	20776650	20776651	rs11082321	25038754	Cai Q	2014-07-20	Nat Genet	Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1.	Breast cancer	2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls	5,029 Chinese ancestry cases, 5,302 Chinese ancestry controls, 6,066 Korean ancestry cases, 8,003 Korean ancestry controls, 6,572 Japanese ancestry cases, 6,539 Japanese ancestry controls, 16,003 European ancestry cases, 41,335 European ancestry controls	18q11.2	NR	rs11082321-A	0.21	7E-7	(East Asian)	1.08	[NR]	Affymetrix [up to 1930412] (imputed)	N
743	chr18	20776865	20776866	rs2117243	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs2117243-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20791088	20791089	rs35613355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1, TMEM241	rs35613355-G	NR	9E-9		0.0306297	[0.02-0.041] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20798760	20798761	rs72874993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1, TMEM241	rs72874993-C	NR	3E-10		0.023282	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20798760	20798761	rs72874993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1, TMEM241	rs72874993-C	NR	7E-11		0.0220654	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20807901	20807902	rs2117244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1, TMEM241	rs2117244-C	NR	2E-8		0.0189024	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20815222	20815223	rs12455370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q11.2	CABLES1, TMEM241	rs12455370-C	NR	2E-12		0.0256737	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20815222	20815223	rs12455370	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q11.2	CABLES1, TMEM241	rs12455370-C	NR	6E-11		0.0237134	[0.017-0.031] unit decrease	Affymetrix [323123] (imputed)	N
743	chr18	20820727	20820728	rs12458523	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Postherpetic neuralgia	89 Japanese ancestry cases, 282 Japanese ancestry controls	NA	18q11.2	CABLES1	rs12458523-?	NR	6E-6				Illumina [445723]	N
743	chr18	20822821	20822822	rs45568539	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs45568539-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20826150	20826151	rs113949240	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	18q11.2	CABLES1	rs113949240-A	0.27459401	2E-8		0.197629	[0.13-0.27] unit increase	Affymetrix [9463307] (imputed)	N
743	chr18	20826150	20826151	rs113949240	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	18q11.2	CABLES1	rs113949240-A	0.27459401	1E-6		0.00502376	[0.003-0.007] unit decrease	Affymetrix [9463307] (imputed)	N
743	chr18	20828606	20828607	rs144942570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs144942570-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20828971	20828972	rs1968470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1, TMEM241	rs1968470-G	NR	3E-10		0.0184519	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
743	chr18	20828971	20828972	rs1968470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs1968470-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
743	chr18	20828971	20828972	rs1968470	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q11.2	CABLES1, TMEM241	rs1968470-A	0.6373	2E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr18	20832556	20832557	rs6507568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	CABLES1, TMEM241	rs6507568-G	NR	6E-18		0.0297681	[0.023-0.037] unit decrease	Affymetrix [321114] (imputed)	N
743	chr18	20834306	20834307	rs17186875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q11.2	CABLES1, TMEM241	rs17186875-T	NR	2E-16		0.0291654	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
744	chr18	20870629	20870630	rs12959823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs12959823-?	NR	3E-11				NR [~ 8900000] (imputed)	N
744	chr18	20873585	20873586	rs4800464	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q11.2	TMEM241	rs4800464-A	0.2626	1E-6		0.0351	[0.021-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
744	chr18	20879216	20879217	rs9949617	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	18q11.2	CABLES1, C18orf45	rs9949617-?	0.53	2E-8		1.28	[1.18-1.38]	Illumina [1361436] (imputed)	N
744	chr18	20885182	20885183	rs7238397	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs7238397-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
744	chr18	20890717	20890718	rs11082402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	TMEM241	rs11082402-G	NR	6E-11		0.0207632	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
744	chr18	20891630	20891631	rs35327499	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	18q11.2	TMEM241	rs35327499-A	0.102548	2E-8		5.62	z score increase	NR [10847151] (imputed)	N
744	chr18	20897144	20897145	rs201501145	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q11.2	NR	rs201501145-?	NR	2E-6		3104.3882	NR unit decrease	Illumina [2379855]	N
744	chr18	20912039	20912039	rs397728918	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q11.2	TMEM241	rs397728918-A	0.3331	8E-6		0.0305	[0.017-0.044] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
744	chr18	20932877	20932878	rs1501411	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs1501411-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
744	chr18	20970705	20970706	rs10502437	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	18q11.2	NR	rs10502437-G	0.6	3E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [up to 17000000] (imputed)	N
744	chr18	20971008	20971009	rs140162370	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	18q11.2	TMEM241, RIOK3	rs140162370-?	NR	1E-6		3.38		Illumina [6778521] (imputed)	N
745	chr18	20974534	20974535	rs72876954	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs72876954-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
745	chr18	20979882	20979883	rs75448045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs75448045-?	NR	5E-16				NR [~ 8900000] (imputed)	N
745	chr18	21012597	21012598	rs11082500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q11.2	NR	rs11082500-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
745	chr18	21035597	21035598	rs12607968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q11.2	RIOK3	rs12607968-A	NR	4E-9		0.0175702	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
745	chr18	21039392	21039393	rs9954741	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	18q11.2	RIOK3, Y_RNA	rs9954741-?		3E-21				Illumina [9499600] (imputed)	N
745	chr18	21039392	21039393	rs9954741	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	18q11.2	RIOK3, Y_RNA	rs9954741-C	0.351	1E-13	(height)	0.0134	[0.0099-0.0169] unit decrease	Illumina [9499600] (imputed)	N
745	chr18	21042077	21042077	rs78192891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	18q11.2		rs78192891-TA	NR	4E-8		0.0153	[0.0098-0.0208] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
745	chr18	21049666	21049667	rs147855116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs147855116-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
745	chr18	21049733	21049734	rs140271614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	18q11.2	RIOK3	rs140271614-A	0.0065	8E-14		0.1838517	[0.14-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
745	chr18	21049733	21049734	rs140271614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	18q11.2	RIOK3	rs140271614-A	0.0065	6E-13		0.1775436	[0.13-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
745	chr18	21049733	21049734	rs140271614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	18q11.2	RIOK3	rs140271614-A	0.0065	3E-13		0.179018	[0.13-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
745	chr18	21049733	21049734	rs140271614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	18q11.2	RIOK3	rs140271614-A	0.0065	1E-12		0.1745625	[0.13-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
745	chr18	21057209	21057210	rs33969048	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	18q11.2		rs33969048-?	NR	5E-28		0.146065	[0.12-0.17] unit increase	NR [9800000] (imputed)	N
745	chr18	21057209	21057210	rs33969048	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	18q11.2		rs33969048-?	NR	2E-32		0.166269	[0.14-0.19] unit increase	NR [9800000] (imputed)	N
745	chr18	21057209	21057210	rs33969048	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	18q11.2		rs33969048-?	NR	7E-43		0.18514	[0.16-0.21] unit increase	NR [9800000] (imputed)	N
745	chr18	21057209	21057210	rs33969048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q11.2	RIOK3	rs33969048-A	0.00503900000000002	7E-23		0.1549214	[0.12-0.19] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057209	21057210	rs33969048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q11.2	RIOK3	rs33969048-A	0.00503900000000002	4E-22		0.15190633	[0.12-0.18] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057209	21057210	rs33969048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q11.2	RIOK3	rs33969048-A	0.00503900000000002	5E-32		0.18536018	[0.15-0.22] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057209	21057210	rs33969048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q11.2	RIOK3	rs33969048-A	0.00504199999999999	2E-35		0.19453606	[0.16-0.23] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057209	21057210	rs33969048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q11.2	RIOK3	rs33969048-A	0.00504300000000002	8E-35		0.19262785	[0.16-0.22] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057209	21057210	rs33969048	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	18q11.2	RIOK3	rs33969048-A	0.0038	2E-10		0.2133869	[0.15-0.28] unit increase	Affymetrix [~ 2500000] (imputed)	N
745	chr18	21057227	21057228	rs56282762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q11.2	RIOK3	rs56282762-T	0.005992	2E-41		0.19562428	[0.17-0.22] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057227	21057228	rs56282762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q11.2	RIOK3	rs56282762-T	0.00599300000000003	4E-40		0.19240439	[0.16-0.22] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057227	21057228	rs56282762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q11.2	RIOK3	rs56282762-T	0.005996	2E-28		0.16033474	[0.13-0.19] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057227	21057228	rs56282762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q11.2	RIOK3	rs56282762-T	0.00598200000000004	9E-51		0.2166979	[0.19-0.25] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21057227	21057228	rs56282762	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q11.2	RIOK3	rs56282762-T	0.00598399999999999	2E-50		0.21584952	[0.19-0.24] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21069067	21069068	rs62095889	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q11.2	NA	rs62095889-A	0.3426	2E-15		0.0166	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
745	chr18	21074254	21074255	rs303752	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	RMC1	rs303752-A	0.409	7E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
745	chr18	21074254	21074255	rs303752	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	RMC1	rs303752-A	0.409	1E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
745	chr18	21074254	21074255	rs303752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q11.2		rs303752-A	0.4067	1E-14		0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
745	chr18	21074254	21074255	rs303752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q11.2	Intergenic	rs303752-A	0.4067	3E-12	(MTAG)	0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q11.2	NR	rs303753-A	0.346205	7E-19		0.020832675	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q11.2		rs303753-A	0.346194	9E-23		0.023071727	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs303753-A	0.284667	3E-21				Affymetrix, Illumina [24649327] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q11.2	NR	rs303753-A	0.34473	2E-23		0.019587	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs303753-A	0.304516	1E-25				Affymetrix, Illumina [23114412] (imputed)	N
745	chr18	21074921	21074922	rs303753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q11.2	NR	rs303753-A	0.345097	1E-28		0.022761	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
745	chr18	21074921	21074922	rs303753	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	18q11.2	NR	rs303753-?		3E-10		0.0144597	[0.01-0.0189] unit decrease	Affymetrix [19400418] (imputed)	N
745	chr18	21074921	21074922	rs303753	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Poultry consumption	335,576 European ancestry individuals	NA	18q11.2	TMEM241, RIOK3, C18orf8, NPC1	rs303753-?	NR	1E-9		0.0158927	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
745	chr18	21074921	21074922	rs303753	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	18q11.2	C18orf8	rs303753-A	0.3461	4E-8		0.012924593	[0.0083-0.0175] unit decrease	Affymetrix [11514936] (imputed)	N
745	chr18	21075440	21075441	rs167336	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q11.2	C18orf8	rs167336-T	0.5655	2E-6		0.0326	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
745	chr18	21075440	21075441	rs167336	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q11.2	C18orf8	rs167336-T	0.5655	2E-6		0.0326	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
745	chr18	21083737	21083738	rs303760	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q11.2	NR	rs303760-C	0.6522	1E-12		0.0342	[0.025-0.044] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
745	chr18	21083737	21083738	rs303760	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q11.2	NR	rs303760-C	0.6887	2E-14		0.0334	[0.025-0.042] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
745	chr18	21083737	21083738	rs303760	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q11.2	C18orf8	rs303760-T	0.346	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
745	chr18	21085354	21085355	rs12966114	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q11.2	NR	rs12966114-T	0.574521	2E-9		0.0126201	[0.0085-0.0168] unit increase	NR [NR]	N
745	chr18	21086124	21086125	rs177430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	18q11.2		rs177430-T	NR	3E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
745	chr18	21086124	21086125	rs177430	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q11.2	C18orf8	rs177430-T	NR	3E-8		0.024669074	[0.016-0.033] unit decrease	Affymetrix [NR]	N
745	chr18	21086124	21086125	rs177430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q11.2	C18orf8	rs177430-T	0.5346	1E-11		0.0442	[0.031-0.057] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
745	chr18	21086124	21086125	rs177430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	18q11.2	C18orf8	rs177430-T	0.5313	4E-8		0.0453	[0.029-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
745	chr18	21086124	21086125	rs177430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q11.2	C18orf8	rs177430-T	0.5346	2E-9		0.0396	[0.027-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
745	chr18	21087530	21087531	rs891389	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q11.2	NPC1, C18orf8	rs891389-T	0.345456	1E-11		0.015931074	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
745	chr18	21090022	21090023	rs1788808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q11.2		rs1788808-G	NR	2E-19		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
745	chr18	21090022	21090023	rs1788808	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q11.2	NPC1	rs1788808-A	0.505066	2E-20		0.0127402	[0.01-0.015] unit increase	Affymetrix [12370749]	N
745	chr18	21090022	21090023	rs1788808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q11.2		rs1788808-?	NR	2E-26				NR [~ 8900000] (imputed)	N
745	chr18	21096682	21096685	rs142986954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	18q11.2		rs142986954-T	NR	4E-13		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
745	chr18	21096689	21096691	rs200186840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	18q11.2		rs200186840-T	NR	2E-15		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
745	chr18	21101943	21101944	rs1788820	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	18q11.2	C18orf8	rs1788820-G	0.6548	2E-10		0.0067	[0.0045-0.0089] unit increase	Affymetrix [~ 7740000] (imputed)	N
745	chr18	21101943	21101944	rs1788820	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q11.2	NR	rs1788820-A	NR	4E-12		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
745	chr18	21101943	21101944	rs1788820	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q11.2	C18orf8	rs1788820-G	0.66	1E-9		0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
746	chr18	21103908	21103909	rs891387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	18q11.2	NR	rs891387-T	0.4954	4E-14		0.0134	[0.0099-0.0169] unit increase	NR [~ 27400000] (imputed)	N
746	chr18	21103908	21103909	rs891387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q11.2	NA	rs891387-T	0.4951	9E-35		0.0208	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
746	chr18	21103908	21103909	rs891387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q11.2	NA	rs891387-T	0.4951	9E-35		0.0208	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
746	chr18	21104887	21104888	rs1808579	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q11.2	NPC1	rs1808579-C	0.517857	7E-11		0.00915422	[0.0064-0.0119] unit increase	Affymetrix [12370749]	N
746	chr18	21104887	21104888	rs1808579	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q11.2	NA	rs1808579-T	0.4802	2E-33		0.0196	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
746	chr18	21104887	21104888	rs1808579	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	18q11.2	C18orf8	rs1808579-?	NR	4E-6	(IL-15 Ra)	0.0999208	[0.058-0.142] unit increase	Illumina [4020654] (imputed)	N
746	chr18	21104887	21104888	rs1808579	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	C18orf8	rs1808579-T	0.4656	8E-6		0.0152	[0.0085-0.0219] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
746	chr18	21104887	21104888	rs1808579	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q11.2	C18orf8	rs1808579-T	0.4656	1E-6	(women)	0.0216	[0.013-0.03] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
746	chr18	21104887	21104888	rs1808579	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	18q11.2	C18orf8	rs1808579-C	NR	2E-7	(additive model)	0.021	[0.013-0.029] unit increase	NR [9288881] (imputed)	N
746	chr18	21104887	21104888	rs1808579	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q11.2	C18orf8	rs1808579-C	0.534	4E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
746	chr18	21104887	21104888	rs1808579	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q11.2	C18orf8	rs1808579-C	0.534	4E-8		0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
746	chr18	21104887	21104888	rs1808579	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q11.2	C18orf8	rs1808579-C	0.534	1E-8	(EA, women)	0.022	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
746	chr18	21104887	21104888	rs1808579	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	C18orf8	rs1808579-T	0.4675	2E-10	(EA)	0.0226	[0.016-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
746	chr18	21104887	21104888	rs1808579	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q11.2	C18orf8	rs1808579-T	0.4675	1E-10	(EA,women)	0.0295	[0.02-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
746	chr18	21109465	21109466	rs1652376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q11.2		rs1652376-T	NR	4E-30		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
746	chr18	21109465	21109466	rs1652376	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	18q11.2	C18orf8, NPC1	rs1652376-G	NR	3E-11		0.0083938	[0.0059-0.0109] unit decrease	Affymetrix [10061374] (imputed)	N
746	chr18	21109465	21109466	rs1652376	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q11.2	NR	rs1652376-T	0.4644	4E-17		0.020876763	[0.016-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
746	chr18	21113284	21113285	rs2510344	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	18q11.2	NR	rs2510344-T	0.509842	2E-9		0.0116266	[0.0079-0.0154] unit increase	Affymetrix [15000001]	N
746	chr18	21115059	21115060	rs6507716	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q11.2	NPC1	rs6507716-A	0.511556	8E-12		0.0134498	[0.0096-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
746	chr18	21115059	21115060	rs6507716	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q11.2	NR	rs6507716-A	0.521688595403712	4E-11		0.019484619	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
746	chr18	21116699	21116700	rs80358259	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	18q11.2		rs80358259-?	NR	7E-10		0.198625	[0.13-0.27] unit increase	NR [9800000] (imputed)	N
746	chr18	21116699	21116700	rs80358259	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	18q11.2		rs80358259-?	NR	6E-11		0.224097	[0.16-0.29] unit decrease	NR [9800000] (imputed)	N
746	chr18	21116699	21116700	rs80358259	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	18q11.2		rs80358259-?	NR	2E-9		0.214889	[0.15-0.28] unit decrease	NR [9800000] (imputed)	N
746	chr18	21116997	21116998	rs12964689	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	18q11.2	NPC1	rs12964689-?	NR	7E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
746	chr18	21119290	21119291	rs6507720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q11.2	NR	rs6507720-?	NR	1E-25				Affymetrix [~ 8270000] (imputed)	N
746	chr18	21120034	21120035	rs7239575	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q11.2	NPC1	rs7239575-T	0.509503	4E-15		0.0156502	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
746	chr18	21120034	21120035	rs7239575	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	18q11.2	NPC1	rs7239575-C	0.49327	4E-11		0.043234	[0.03-0.056] unit decrease	Affymetrix [9463307] (imputed)	N
746	chr18	21122207	21122207	rs771025058	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	18q11.2		rs771025058-AAG	0.54	5E-15		0.015	mmol/L increase	NR [NR] (imputed)	N
746	chr18	21122207	21122207	rs771025058	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18q11.2		rs771025058-AAG	0.54	7E-26				NR [NR] (imputed)	N
746	chr18	21122207	21122207	rs771025058	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	18q11.2		rs771025058-AAG	0.54	4E-17		0.015	mmol/L decrease	NR [NR] (imputed)	N
746	chr18	21122207	21122207	rs771025058	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18q11.2		rs771025058-AAG	0.54	4E-30		0.017	% increase	NR [NR] (imputed)	N
746	chr18	21122207	21122207	rs771025058	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	18q11.2		rs771025058-AAG	0.54	4E-7		0.01	U/L increase	NR [NR] (imputed)	N
746	chr18	21124944	21124945	rs1788799	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	18q11.2	NPC1	rs1788799-C	0.3345	1E-17		0.0161	[0.012-0.02] unit increase	Illumina [246328]	N
746	chr18	21126080	21126081	rs4800490	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q11.2		rs4800490-A	0.5429	2E-8		41.433723	z score increase	NR [6814003]	N
746	chr18	21126080	21126081	rs4800490	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q11.2	NPC1	rs4800490-C	0.4973	1E-9		0.012317244	[0.0084-0.0163] unit increase	Affymetrix [up to 18485882] (imputed)	N
746	chr18	21126080	21126081	rs4800490	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q11.2	NPC1	rs4800490-?	NR	1E-10		0.013046194	[0.0091-0.017] unit decrease	NR [7306098]	N
746	chr18	21127909	21127910	rs2435307	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q11.2	NPC1	rs2435307-C	0.513657	3E-17		0.0161055	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
746	chr18	21138864	21138865	rs2472610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18q11.2		rs2472610-?	NR	2E-10				NR [~ 8900000] (imputed)	N
746	chr18	21140431	21140432	rs1805081	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	18q11.2	NPC1	rs1805081-A	0.6	8E-8	(adults)	1.41	[1.19-1.61]	Illumina [308846]	N
746	chr18	21140431	21140432	rs1805081	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	18q11.2	NPC1	rs1805081-A	0.56	3E-7				Illumina [308846]	N
746	chr18	21143738	21143739	rs2960578	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	18q11.2	NPC1	rs2960578-G	NR	7E-9		0.0062455	[0.0041-0.0084] unit increase	NR [16367095] (imputed)	N
746	chr18	21147508	21147509	rs1652348	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or heart failure (MTAG)	89,297 European ancestry individuals with body fat percentage, 47,309 European ancestry cases with heart failure, 930,014 European ancestry controls without heart failure, 11,419 Korean ancestry, Indian Asian ancestry, Jamaican ancestry individuals with body fat percentage	NA	18q11.2		rs1652348-?	NR	3E-8		0.0367	[0.021-0.052] unit increase	NR [NR] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.6111	4E-11		0.02462545	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.6111	2E-11		0.02498002	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.6111	4E-11		0.02460539	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.6111	2E-11		0.02495232	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.6111	7E-11		0.02435196	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21151617	21151619	rs147694761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	18q11.2	NPC1	rs147694761-C	0.611	3E-11		0.02479629	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
746	chr18	21159629	21159630	rs1788784	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	18q11.2	NPC1	rs1788784-G	0.66	1E-10		0.0073076	[0.0051-0.0095] unit increase	NR [16367095] (imputed)	N
746	chr18	21159629	21159630	rs1788784	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q11.2	NPC1	rs1788784-G	0.6557999999999999	4E-10		1.0276761		Affymetrix [11880941] (imputed)	N
746	chr18	21161133	21161134	rs1788783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q11.2		rs1788783-?	NR	2E-12				NR [~ 8900000] (imputed)	N
746	chr18	21161133	21161134	rs1788783	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q11.2	NPC1	rs1788783-T	0.504	1E-8		0.012	[0.0079-0.0161] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
746	chr18	21161133	21161134	rs1788783	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q11.2	NPC1	rs1788783-T	0.504	8E-14		0.0158	[0.012-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
746	chr18	21165079	21165080	rs1788781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q11.2	NR	rs1788781-A	NR	4E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr18	21165162	21165163	rs1623003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q11.2		rs1623003-T	0.6594	4E-12	(conditional-joint)	0.0103	[0.0074-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
746	chr18	21165162	21165163	rs1623003	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	18q11.2	NPC1	rs1623003-T	0.667	6E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
746	chr18	21176769	21176770	rs1652362	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	18q11.2	NR	rs1652362-T	NR	9E-6		1.1914691	[1.11-1.27]	Illumina [11600722] (imputed)	N
747	chr18	21244036	21244037	rs1788776	24256812	Fogh I	2013-11-20	Hum Mol Genet	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	18q11.2	ANKRD29	rs1788776-A	NR	8E-6		1.11	[1.06-1.16]	Illumina [~ 7000000] (imputed)	N
747	chr18	21250071	21250072	rs17259361	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	18q11.2	NR	rs17259361-T	0.014	3E-6		1.44	[0.83-2.05] unit increase	Illumina [9469131] (imputed)	N
747	chr18	21348139	21348140	rs556443619	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	18q11.2	LAMA3	rs556443619-C	0.0058	4E-9		0.1483076	[0.099-0.198] unit increase	Affymetrix [~ 2500000] (imputed)	N
747	chr18	21348139	21348140	rs556443619	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	18q11.2	LAMA3	rs556443619-C	0.0058	6E-9		0.146628	[0.097-0.196] unit increase	Affymetrix [~ 2500000] (imputed)	N
748	chr18	21365852	21365853	rs11082762	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	18q11.2	LAMA3	rs11082762-A	0.36	7E-7	(Joint)	1.16	[1.09-1.24]	Illumina [254145]	N
748	chr18	21405552	21405553	rs8098244	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	18q11.2	NR	rs8098244-A	0.275360999999999	9E-6		1.1853783	[1.10016620517041-1.27719049018494]	Illumina [11595112] (imputed)	N
748	chr18	21405552	21405553	rs8098244	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	18q11.2	NR	rs8098244-A	0.275360999999999	4E-8		1.1902364	[1.11903760649588-1.2659653630658]	Illumina [11595112] (imputed)	N
748	chr18	21405552	21405553	rs8098244	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	18q11.2	NR	rs8098244-A	0.275	2E-7		1.11	[1.07-1.16]	Illumina [11595112] (imputed)	N
748	chr18	21424990	21424991	rs17202961	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	18q11.2	LAMA3	rs17202961-A	0.0674	4E-7		0.13	NR SD units increase	Illumina [21568490] (imputed)	N
748	chr18	21430743	21430744	rs7237244	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	18q11.2	LAMA3	rs7237244-?	NR	4E-7		1.72	[1.39-2.13]	Affymetrix, Illumina [NR] (imputed)	N
748	chr18	21470323	21470324	rs720064	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	18q11.2	NR	rs720064-?	NR	4E-6		0.0274	[0.016-0.039] unit decrease	Illumina [at least 560000] (imputed)	N
748	chr18	21474564	21474565	rs1652002	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	18q11.2	NR	rs1652002-G	0.03465	1E-7		1.053	[0.26-1.85] unit increase	Illumina [at least 567677] (imputed)	N
748	chr18	21483567	21483568	rs112389236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q11.2		rs112389236-?	NR	1E-8				NR [~ 8900000] (imputed)	N
749	chr18	21503147	21503148	rs1786310	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q11.2	C18orf17	rs1786310-?	NR	7E-6	(thyroxine)	0.27796546	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
749	chr18	21598265	21598266	rs78936632	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q11.2	NR	rs78936632-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
749	chr18	21619930	21619931	rs4800173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q11.2	TTC39C	rs4800173-G	0.804002	2E-18		0.025196448	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr18	21619930	21619931	rs4800173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q11.2		rs4800173-?	NR	6E-11				NR [~ 8900000] (imputed)	N
749	chr18	21620064	21620065	rs4239439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q11.2	TTC39C	rs4239439-A	0.796857	5E-11		0.01831561	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
749	chr18	21620064	21620065	rs4239439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q11.2	TTC39C	rs4239439-A	0.796869	3E-14		0.021290356	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
749	chr18	21626634	21626635	rs4239440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs4239440-?	NR	2E-8				NR [~ 8900000] (imputed)	N
750	chr18	21640563	21640564	rs2043027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q11.2	TTC39C	rs2043027-A	0.761172	3E-10		0.017240848	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
750	chr18	21680734	21680735	rs9966620	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy with decreased visual acuity in type 2 diabetes	469 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	18q11.2	TTC39C	rs9966620-A	0.0964	7E-8		1.95	[1.71-2.19]	Affymetrix, Illumina [6717712] (imputed)	N
750	chr18	21682299	21682300	rs16940484	30566433	Taira M	2018-12-19	PLoS One	A variant within the FTO confers susceptibility to diabetic nephropathy in Japanese patients with type 2 diabetes.	Type 2 diabetes nephropathy including microalbuminuria	at least 2,809 Japanese ancestry cases, 5,592 Japanese ancestry controls	at least 2,115 Japanese ancestry cases, 2,519 Japanese ancestry controls	18q11.2	TTC39C	rs16940484-T	NR	6E-7		1.13	[1.08-1.19]	Illumina [NR]	N
750	chr18	21744431	21744432	rs12604324	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	18q11.2	OSBPL1A	rs12604324-A	0.0201	1E-6	(Primary)	1.8953	[1.13-2.66] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
750	chr18	21749614	21749615	rs9635963	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	18q11.2	OSBPL1A	rs9635963-?	0.18	2E-7	(SHBG)			Illumina [496032]	N
751	chr18	21775263	21775264	rs12607258	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	18q11.2	NR	rs12607258-C	NR	8E-6		1.134	NR	Illumina [at least 560000] (imputed)	N
751	chr18	21786487	21786488	rs4800180	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q11.2	CABYR	rs4800180-?	NR	1E-6	(niacinamide)	0.20322624	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
751	chr18	21829156	21829157	rs77930854	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q11.2	NR	rs77930854-T	0.03136	1E-8	(ABCB6)	0.0284	NR unit increase	Illumina [1671387] (imputed)	N
751	chr18	21839151	21839152	rs275856	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	18q11.2	OSBPL1A	rs275856-T	0.11	1E-6		1.51	[1.28-1.77]	Illumina [5891794] (imputed)	N
751	chr18	21849023	21849024	rs77599684	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 2 electroencephalogram power	191 European ancestry individuals	NA	18q11.2	NR	rs77599684-?	NR	9E-7		0.05	NR unit increase	Affymetrix [388620]	N
751	chr18	21857741	21857742	rs76786413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q11.2		rs76786413-T	NR	8E-10		0.0224	[0.015-0.029] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
751	chr18	21857741	21857742	rs76786413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q11.2		rs76786413-T	NR	3E-15		0.0345	[0.026-0.043] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
751	chr18	21857741	21857742	rs76786413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q11.2	OSBPL1A	rs76786413-T	0.037241	3E-12		0.04099837	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr18	21857741	21857742	rs76786413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q11.2	OSBPL1A	rs76786413-T	0.037218	8E-11		0.038799055	[0.027-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
751	chr18	21857741	21857742	rs76786413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q11.2		rs76786413-?	NR	1E-9				NR [~ 8900000] (imputed)	N
752	chr18	21893929	21893930	rs117006166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	18q11.2		rs117006166-A	0.176125	5E-8		0.0348149	[0.022-0.047] unit decrease	Illumina [13467171] (imputed)	N
752	chr18	21912864	21912865	rs2848605	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	18q11.2		rs2848605-G	0.3094	9E-6		1.46	[1.235-1.725]	Affymetrix [7975321] (imputed)	N
752	chr18	21938657	21938658	rs7227401	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	18q11.2	OSBPL1A	rs7227401-T	0.39	4E-7	(NW, men)	0.17	[NR] cm increase	Affymetrix [433510]	N
752	chr18	21990612	21990613	rs182861506	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus E sp900314705 abundance in stool	5,959 Finnish ancestry individuals	NA	18q11.2		rs182861506-T	0.0402884	1E-8		0.157102	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
753	chr18	22092072	22092073	rs62090028	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	18q11.2		rs62090028-?	NR	4E-6		0.22934857	[0.13-0.33] unit decrease	Illumina [9939936] (imputed)	N
753	chr18	22106775	22106776	rs7235440	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	LOC390843	rs7235440-G	0.46	6E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
753	chr18	22108762	22108763	rs8099516	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Diastolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	18q11.2	HRH4	rs8099516-T		5E-8		5.39	[3.53-7.25] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
753	chr18	22112806	22112807	rs482962	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	18q11.2	HRH4	rs482962-A	0.262	5E-6	(Female)	1.607	[1.31-1.9]	NR [up to 1668434] (imputed)	N
753	chr18	22114056	22114057	rs1006609	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	18q11.2	NR	rs1006609-A	0.92	3E-6	(AA)	6.6	[3.95-9.25] bpm decrease	Illumina [at least 1100000] (imputed)	N
753	chr18	22132493	22132494	rs7243817	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q11.2	Intergenic	rs7243817-C	0.134	4E-6	(AA)	0.021	unit increase	Illumina [NR] (imputed)	N
753	chr18	22136568	22136569	rs12954803	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	18q11.2	HRH4	rs12954803-?	NR	8E-6				Affymetrix, Illumina [~ 1300000]	N
753	chr18	22137318	22137319	rs16940823	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q11.2	HRH4	rs16940823-C	0.815366	2E-9		0.010772	[0.0073-0.0143] unit increase	Affymetrix [12370749]	N
753	chr18	22137318	22137319	rs16940823	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q11.2	NA	rs16940823-A	0.1705	2E-12		0.0157	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
754	chr18	22154234	22154235	rs11660335	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q11.2	NA	rs11660335-T	0.8231	6E-12		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
754	chr18	22166256	22166257	rs12606173	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	18q11.2	NR	rs12606173-A	0.2231	3E-6		0.399	[0.16-0.64] unit decrease	Illumina [at least 567677] (imputed)	N
754	chr18	22169992	22169993	rs1945166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q11.2	Intergenic	rs1945166-T	0.8181	5E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
754	chr18	22173649	22173650	rs72880429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q11.2	NR	rs72880429-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
754	chr18	22173649	22173650	rs72880429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q11.2		rs72880429-?	NR	4E-9				NR [~ 8900000] (imputed)	N
754	chr18	22195901	22195902	rs78434584	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	18q11.2	NR	rs78434584-G	NR	6E-7		0.5077	[0.31-0.71] SD units decrease	NR [10700000] (imputed)	N
754	chr18	22204766	22204767	rs112154095	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q11.2	NR	rs112154095-T	0.1879	4E-10		0.0198772	[0.014-0.026] unit decrease	Affymetrix [10549349] (imputed)	N
754	chr18	22226900	22226901	rs56204509	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	18q11.2	NR	rs56204509-G	0.02	4E-6		1.31	[1.19-1.43]	Illumina [8468885] (imputed)	N
754	chr18	22242780	22242781	rs1612661	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	18q11.2	LOC729950	rs1612661-?	NR	9E-6				Illumina [1940243] (imputed)	N
754	chr18	22254584	22254585	rs10502452	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 53)	19,670 European ancestry individuals	NA	18q11.2		rs10502452-?	NR	1E-9				NR [9705931] (imputed)	N
755	chr18	22290710	22290711	rs1668091	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	LOC729950	rs1668091-T	0.681	5E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
755	chr18	22290710	22290711	rs1668091	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q11.2	LOC729950	rs1668091-T	0.681	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
755	chr18	22310815	22310816	rs34448454	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	18q11.2		rs34448454-G	0.25	1E-20		9.32	z score increase	Affymetrix [9061022] (imputed)	N
755	chr18	22310815	22310816	rs34448454	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18q11.2	NR	rs34448454-G	0.2189	1E-17				NR [9056863] (imputed)	N
755	chr18	22323366	22323367	rs8094865	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18q11.2		rs8094865-G	0.25	1E-9		6.06	z score increase	Affymetrix [9061022] (imputed)	N
755	chr18	22323366	22323367	rs8094865	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	18q11.2	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs8094865-?		2E-10				NR [7428630] (imputed)	N
755	chr18	22323366	22323367	rs8094865	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	18q11.2	FAM53A, SLBP, TMEM129, TACC3	rs8094865-?		5E-10				NR [7428630] (imputed)	N
755	chr18	22341162	22341163	rs1842681	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q11.2	NR	rs1842681-A	0.2279	8E-10				NR [9056863] (imputed)	N
755	chr18	22341162	22341163	rs1842681	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	18q11.2	LOC105372028	rs1842681-A	0.24	1E-7		1.3	[1.2-1.4]	Affymetrix, Illumina [~ 8500000] (imputed)	N
755	chr18	22352251	22352252	rs147783933	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	18q11.2	NR	rs147783933-T	0.0177	9E-6		1.7494751	[1.5-2]	Illumina [8567708] (imputed)	N
755	chr18	22366821	22366822	rs1376473	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q11.2		rs1376473-T	0.22	6E-17		8.37	z score increase	Affymetrix [9061022] (imputed)	N
755	chr18	22377566	22377567	rs11083092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q11.2		rs11083092-?	NR	3E-14				NR [~ 8900000] (imputed)	N
756	chr18	22463496	22463497	rs8098454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q11.2	RP11-449D8.5	rs8098454-T	0.08701	4E-13		0.029117942	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
756	chr18	22463496	22463497	rs8098454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q11.2	RP11-449D8.5	rs8098454-T	0.087023	1E-12		0.028368846	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
756	chr18	22463496	22463497	rs8098454	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q11.2	RP11-449D8.5	rs8098454-T	0.087008	4E-12		0.02780668	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
756	chr18	22463496	22463497	rs8098454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q11.2	NR	rs8098454-T	0.086676	3E-13		0.023816	[0.017-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
756	chr18	22471556	22471557	rs62085764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs62085764-G	0.075681	6E-14				Affymetrix, Illumina [24588908] (imputed)	N
756	chr18	22472473	22472474	rs8099802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q11.2		rs8099802-T	NR	7E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
756	chr18	22487562	22487563	rs117283712	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q11.2	NR	rs117283712-A	0.02439	1E-8	(ORM2)	0.1076	NR unit increase	Illumina [1671387] (imputed)	N
756	chr18	22492581	22492582	rs1786152	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	NR	rs1786152-?		9E-6				Illumina [4322238] (imputed)	N
756	chr18	22493883	22493884	rs12608210	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	18q11.2	LOC100289596, ZNF521	rs12608210-A	0.29	1E-6	(EA)	1.95	[1.48-2.56]	Illumina [up to 547389]	N
757	chr18	22624707	22624708	rs10460095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q11.2		rs10460095-A	0.5714	3E-18		0.0124	[0.0097-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
757	chr18	22624707	22624708	rs10460095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q11.2	Intergenic	rs10460095-A	0.5714	2E-19	(MTAG)	0.0119	[0.0094-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
757	chr18	22628176	22628177	rs72878142	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q11.2	AMZ1, GNA12	rs72878142-?		9E-11				NR [7428630] (imputed)	N
757	chr18	22630835	22630836	rs1013987	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q11.2		rs1013987-T	0.4042	1E-11		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
757	chr18	22630835	22630836	rs1013987	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q11.2	HRH4, ZNF521	rs1013987-C	0.5967	6E-13		1.0295275		Affymetrix [11880941] (imputed)	N
757	chr18	22630835	22630836	rs1013987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q11.2		rs1013987-?	NR	2E-9				NR [~ 8900000] (imputed)	N
757	chr18	22636414	22636415	rs4800201	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q11.2	Intergenic	rs4800201-A	0.273	2E-9	(MTAG)	0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
757	chr18	22644275	22644276	rs55654452	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	18q11.2	NR	rs55654452-G	0.56	2E-6		1.11	[1.06-1.16]	Illumina [~ 1113287] (imputed)	N
757	chr18	22647269	22647270	rs4800204	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q11.2	ZNF521	rs4800204-C	0.431538	5E-9		0.0124531	[0.0084-0.0166] unit increase	NR [16516521] (imputed)	N
757	chr18	22648504	22648505	rs8089996	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q11.2		rs8089996-A	0.568	8E-18	(conditional-joint)	0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
757	chr18	22652816	22652817	rs9957365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q11.2	Intergenic	rs9957365-A	0.7004	2E-10	(MTAG)	0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
757	chr18	22652816	22652817	rs9957365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q11.2	Intergenic	rs9957365-A	0.7004	5E-15	(MTAG)	0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
757	chr18	22652816	22652817	rs9957365	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q11.2	Intergenic	rs9957365-A	0.7004	5E-8		0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
757	chr18	22654101	22654102	rs12962845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q11.2		rs12962845-C	0.1325	2E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
757	chr18	22663461	22663462	rs117838136	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Pseudomonas aeruginosa abundance in stool	5,959 Finnish ancestry individuals	NA	18q11.2		rs117838136-T	0.0106043	1E-8		0.152039	[0.1-0.2] unit increase	Illumina [7980478] (imputed)	N
757	chr18	22674659	22674660	rs72881251	25524241	Richter HE	2014-12-15	J Urol	Genetic contributions to urgency urinary incontinence in women.	Urgency urinary incontinence	1,102 European ancestry cases, 405 European ancestry controls	1,133 European ancestry cases, 371 European ancestry controls	18q11.2	ZNF521	rs72881251-?	NR	2E-7		1.5	[1.29-1.75]	Illumina [9077347] (imputed)	N
758	chr18	22676070	22676071	rs62082230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q11.2		rs62082230-?	NR	5E-8				NR [~ 8900000] (imputed)	N
758	chr18	22679189	22679190	rs72881254	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q11.2	NR	rs72881254-A	0.151	2E-8		0.0085785	[0.0056-0.0116] unit increase	NR [9732723] (imputed)	N
758	chr18	22722076	22722077	rs4519409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs4519409-?	NR	9E-23				NR [~ 8900000] (imputed)	N
758	chr18	22731359	22731360	rs8083432	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	18q11.2	ZNF521	rs8083432-?	NR	6E-6	(PHT)			Illumina [NR]	N
758	chr18	22767258	22767259	rs188885834	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q11.2	NR	rs188885834-?	NR	4E-6		0.0081264	[0.0047-0.0116] unit increase	Affymetrix [805426] (imputed)	N
759	chr18	22810618	22810619	rs9946154	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	18q11.2	ZNF521	rs9946154-T	0.6436	7E-7		1.15	1.09-1.21	Affymetrix [6845584] (imputed)	N
759	chr18	22812507	22812508	rs4133168	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	18q11.2	ZNF521	rs4133168-?	NR	3E-6			[NR]	Illumina [283437]	N
759	chr18	22825992	22825993	rs6508355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs6508355-?	NR	5E-20				NR [~ 8900000] (imputed)	N
759	chr18	22842152	22842153	rs8091632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q11.2		rs8091632-A	NR	8E-24		0.0132	[0.011-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
759	chr18	22842152	22842153	rs8091632	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q11.2	ZNF521	rs8091632-?	NR	6E-11		0.019016366	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
759	chr18	22860845	22860846	rs11663772	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q11.2	NR	rs11663772-C	0.0929228	1E-14		0.041154	[0.031-0.052] unit decrease	NR [19129689] (imputed)	N
759	chr18	22862510	22862511	rs12961565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q11.2		rs12961565-?	NR	3E-11				NR [~ 8900000] (imputed)	N
759	chr18	22910978	22910979	rs150021505	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q11.2	NR	rs150021505-?	NR	2E-6		0.0082287	[0.0048-0.0117] unit increase	Affymetrix [805426] (imputed)	N
760	chr18	22956485	22956486	rs77745521	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	18q11.2	ZNF521	rs77745521-?		3E-6				Illumina [7405822] (imputed)	N
760	chr18	22958782	22958783	rs185818984	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	18q11.2	NR	rs185818984-?		9E-7	(PCB194)	1.03	[0.62-1.44] unit decrease	Illumina [8736858] (imputed)	N
760	chr18	22971856	22971857	rs6508367	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	18q11.2	ZNF521, SS18	rs6508367-T	0.96	8E-6		0.04	[0.022-0.058] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
760	chr18	23008306	23008307	rs77756900	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Photobacterium abundance in stool	5,959 Finnish ancestry individuals	NA	18q11.2		rs77756900-G	0.0113464	2E-8		0.105923	[0.069-0.143] unit increase	Illumina [7980478] (imputed)	N
761	chr18	23084117	23084118	rs962247	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	18q11.2	ZNF521, SS18	rs962247-G		1E-16		0.0071	[0.0053-0.0089] unit increase	Affymetrix [13304133] (imputed)	N
761	chr18	23086306	23086307	rs8097070	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	18q11.2	ZNF521, SS18	rs8097070-?		2E-6	(Additive)	3.333333	[2-5]	Illumina [5600610] (imputed)	N
761	chr18	23106222	23106223	rs34777351	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q11.2	NR	rs34777351-C	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
761	chr18	23146251	23146252	rs8089388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q11.2	ZNF521	rs8089388-T	NR	2E-8		0.015979	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
761	chr18	23146251	23146252	rs8089388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q11.2	ZNF521	rs8089388-T	NR	1E-8		0.0162088	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
761	chr18	23153494	23153495	rs273702	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	18q11.2	NR	rs273702-G		6E-6		0.1226	[0.07-0.176] SD units increase	NR [10700000] (imputed)	N
762	chr18	23257185	23257186	rs1840440	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	18q11.2	NR	rs1840440-G	0.61	3E-7	(females)	2.16	[NR] kg increase	Illumina [318237]	N
762	chr18	23280234	23280235	rs74907058	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	18q11.2	intergenic	rs74907058-T	NR	7E-6		0.20320305	[0.089-0.317] unit decrease	NR [> 6200000] (imputed)	N
763	chr18	23393103	23393104	rs7231041	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	SS18	rs7231041-G	0.174	5E-6	(Moderate activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
763	chr18	23393103	23393104	rs7231041	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	SS18	rs7231041-G	0.174	3E-6	(Moderate&vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
763	chr18	23393103	23393104	rs7231041	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q11.2	SS18	rs7231041-G	0.174	2E-6	(Moderate activity )	0.04	[NR] min/d increase	Illumina [899892]	N
763	chr18	23405187	23405188	rs9966832	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	18q11.2	SS18	rs9966832-?	NR	2E-8	(EA)	10.4	[6.68-14.12] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
763	chr18	23405187	23405188	rs9966832	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	SS18	rs9966832-A	0.98	5E-6	(Age 20-81 years)	0.1502	[0.086-0.215] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
763	chr18	23408706	23408707	rs12968260	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Emotional recognition	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	18q11.2	intergenic	rs12968260-G	NR	2E-6		0.3588697	[0.2-0.52] unit decrease	NR [> 6200000] (imputed)	N
763	chr18	23444468	23444469	rs1941238	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	18q11.2	ZNF521, SS18	rs1941238-?	NR	7E-6		2.34	[1.6-3.43]	Illumina [457310]	N
763	chr18	23461311	23461312	rs10432213	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	18q11.2	NR	rs10432213-A	0.0258	4E-7		0.0396	[0.024-0.055] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
764	chr18	23511021	23511022	rs12962847	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 271)	19,670 European ancestry individuals	NA	18q11.2		rs12962847-?	NR	5E-8				NR [9705931] (imputed)	N
764	chr18	23537048	23537049	rs2938676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q11.2		rs2938676-?	NR	7E-8				NR [~ 8900000] (imputed)	N
764	chr18	23551605	23551606	rs559814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs559814-G	0.397487	2E-12				Affymetrix, Illumina [19905671] (imputed)	N
764	chr18	23581229	23581230	rs983259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	18q11.2		rs983259-G	0.169121	2E-10		0.0381611	[0.026-0.05] unit increase	Illumina [13469940] (imputed)	N
764	chr18	23590202	23590203	rs2959356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	18q11.2	NR	rs2959356-G	0.298096	4E-10		0.014017	[0.0096-0.0184] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
765	chr18	23598159	23598160	rs607404	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	18q11.2	SS18	rs607404-A	0.719	1E-9		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
765	chr18	23614702	23614703	rs12960119	23585552	Kirin M	2013-04-11	Hum Mol Genet	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	18q11.2	TAF4B, SS18, PSMA8	rs12960119-G	0.075	2E-6		1.26	[1.14-1.39]	Illumina [299737]	N
765	chr18	23627600	23627601	rs10438986	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	18q11.2	NR	rs10438986-T	0.827105	3E-10		0.044017	[0.03-0.058] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
765	chr18	23662376	23662377	rs600619	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	18q11.2	NR	rs600619-G	0.29	5E-9		1.08	NR	NR [8853336] (imputed)	N
765	chr18	23662376	23662377	rs600619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs600619-G	0.283125	7E-16				Affymetrix, Illumina [24246363] (imputed)	N
765	chr18	23662376	23662377	rs600619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q11.2	NR	rs600619-G	0.292683	2E-16		0.016571	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
765	chr18	23662376	23662377	rs600619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q11.2		rs600619-?	NR	6E-9				NR [~ 8900000] (imputed)	N
765	chr18	23671186	23671187	rs994729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q11.2	SS18	rs994729-A	0.290223	4E-10		0.015298367	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
765	chr18	23671186	23671187	rs994729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs994729-A	0.282209	2E-15				Affymetrix, Illumina [20825802] (imputed)	N
765	chr18	23671186	23671187	rs994729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q11.2	NR	rs994729-A	0.291346	4E-16		0.017392	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
765	chr18	23671186	23671187	rs994729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q11.2		rs994729-?	NR	4E-13				NR [~ 8900000] (imputed)	N
766	chr18	23764234	23764235	rs11877878	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	PSMA8	rs11877878-A	0.93	5E-6	(Age 20-81 years)	0.0906	[0.052-0.129] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
766	chr18	23785094	23785095	rs12967725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q11.2		rs12967725-?	NR	2E-16				NR [~ 8900000] (imputed)	N
766	chr18	23785647	23785648	rs8097810	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q11.2	PSMA8	rs8097810-A	0.94	4E-6	(Age 20-60 years)	0.105	[0.060-0.150] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
766	chr18	23791088	23791089	rs11083166	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q11.2	NR	rs11083166-T	0.519061	2E-8		0.0120503	[0.0078-0.0163] unit decrease	NR [NR]	N
766	chr18	23840469	23840470	rs140262548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q11.2	NR	rs140262548-A	0.061478	6E-12		0.026623	[0.019-0.034] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
767	chr18	23870499	23870500	rs72880146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q11.2		rs72880146-?	NR	2E-15				NR [~ 8900000] (imputed)	N
767	chr18	23886727	23886727	rs201381116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q11.2	TAF4B	rs201381116-GTTAT	0.082056	2E-10		0.026600627	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
767	chr18	23892671	23892672	rs1791780	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	18q11.2	TAF4B	rs1791780-G	0.54	4E-7	(men)			Affymetrix, Illumina [2500000] (imputed)	N
767	chr18	23895836	23895837	rs35614679	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Asthma-chronic obstructive  pulmonary disease overlap syndrome	228 Korean ancestry cases, 5,915 Korean ancestry controls	NA	18q11.2	TAF4B	rs35614679-?	NR	8E-6		2.996		Korean Chip	N
767	chr18	23918272	23918273	rs12960731	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	18q11.2		rs12960731-C	0.04	8E-7		11.69	[7.06-16.31] unit increase	Illumina [19468843] (imputed)	N
767	chr18	23918944	23918945	rs1676988	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	18q11.2	TAF4B	rs1676988-A	NR	2E-6		0.3091	[0.18-0.44] unit decrease	Illumina [9377111] (imputed)	N
767	chr18	23947884	23947885	rs17799796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs17799796-G	0.0613584	6E-10				Affymetrix, Illumina [24332387] (imputed)	N
767	chr18	23952761	23952762	rs138614762	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TAF4B	rs138614762-?	NR	8E-9		1.80787	[NR] unit decrease	Affymetrix [NR] (imputed)	N
767	chr18	23969474	23969475	rs540146895	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	18q11.2	TAF4B	rs540146895-G	7.0E-4	3E-7		4.11566	NR	Affymetrix, Illumina [30341632] (imputed)	N
767	chr18	23983676	23983677	rs1677005	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Asthma-chronic obstructive  pulmonary disease overlap syndrome	228 Korean ancestry cases, 5,915 Korean ancestry controls	NA	18q11.2	TAF4B	rs1677005-?	NR	8E-6		2.618		Korean Chip	N
768	chr18	24053703	24053704	rs62087027	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	18q11.2	KCTD1	rs62087027-G	NR	4E-6		0.0647852	[0.037-0.092] unit increase	Illumina [13520550] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	9E-19	(180 ms)	0.0504132	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	9E-11	(254 ms)	0.0385225	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-9	(90 ms)	0.0325059	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-9	(110 ms)	0.0323434	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-18	(190 ms)	0.0496431	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-17	(206 ms)	0.0481355	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-17	(170 ms)	0.0472146	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-15	(230 ms)	0.0453458	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-15	(130 ms)	0.0440901	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	8E-12	(250 ms)	0.0405552	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	7E-18	(196 ms)	0.0495522	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	7E-15	(128 ms)	0.0443465	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	7E-13	(142 ms)	0.0422833	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	7E-11	(112 ms)	0.0367583	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-9	(260 ms)	0.034423	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-19	(178 ms)	0.0503483	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-17	(202 ms)	0.0475648	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-16	(224 ms)	0.047022	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-14	(240 ms)	0.0443891	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-14	(236 ms)	0.0438084	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-12	(122 ms)	0.0393011	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	6E-12	(114 ms)	0.0392714	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	5E-17	(212 ms)	0.0486475	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	5E-13	(246 ms)	0.0428876	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	5E-13	(144 ms)	0.0425626	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-9	(258 ms)	0.0350649	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-8	(264 ms)	0.0324632	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-19	(188 ms)	0.0507442	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-18	(160 ms)	0.0492572	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-17	(200 ms)	0.0477912	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-16	(226 ms)	0.0475008	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-16	(216 ms)	0.0471188	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-16	(152 ms)	0.0472435	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-15	(148 ms)	0.0455688	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	4E-10	(116 ms)	0.0362119	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-8	(118 ms)	0.0324328	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-17	(210 ms)	0.0488644	[0.037-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-17	(184 ms)	0.0486679	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-16	(168 ms)	0.0471523	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-16	(154 ms)	0.0471889	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-16	(150 ms)	0.0473508	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-14	(242 ms)	0.0449034	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-14	(138 ms)	0.0443095	[0.033-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-13	(244 ms)	0.0437845	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	3E-12	(248 ms)	0.0415991	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-9	(120 ms)	0.0346624	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-8	(262 ms)	0.033294	[0.021-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-18	(192 ms)	0.0504557	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-17	(198 ms)	0.0484802	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-17	(182 ms)	0.0486879	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-17	(172 ms)	0.0480303	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-16	(218 ms)	0.0479049	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-16	(214 ms)	0.0478926	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-16	(204 ms)	0.0478555	[0.036-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-16	(164 ms)	0.04745	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-16	(156 ms)	0.0476794	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-15	(166 ms)	0.0455928	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-14	(234 ms)	0.0450345	[0.033-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-14	(136 ms)	0.0439491	[0.032-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-13	(238 ms)	0.0433336	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-13	(134 ms)	0.0422063	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-13	(132 ms)	0.0423441	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	2E-13	(126 ms)	0.042463	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-9	(256 ms)	0.036081	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-18	(194 ms)	0.0506971	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-18	(186 ms)	0.0504295	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-18	(176 ms)	0.0500216	[0.038-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-18	(162 ms)	0.050815	[0.039-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-17	(174 ms)	0.0494948	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-16	(220 ms)	0.0483578	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-16	(208 ms)	0.048495	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-16	(158 ms)	0.0474233	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-15	(228 ms)	0.0465351	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-15	(222 ms)	0.047051	[0.035-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-14	(232 ms)	0.0453582	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-13	(146 ms)	0.0431724	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-13	(140 ms)	0.0431238	[0.031-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-12	(124 ms)	0.041296	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24093428	24093429	rs12454640	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q11.2	KCTD1	rs12454640-G	0.690218	1E-11	(252 ms)	0.0400281	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
768	chr18	24094509	24094511	rs202056310	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	18q11.2	NR	rs202056310-CAA		6E-7		0.448	[NR] unit decrease	Illumina [NR]	N
768	chr18	24101559	24101560	rs8083427	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	18q11.2	KCTD1	rs8083427-?	NR	3E-6		5.467	unit increase (EA, Australian cohort)	Illumina [610255]	N
768	chr18	24107863	24107864	rs113819682	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	18q11.2	NR	rs113819682-T	NR	4E-6		2.397	[1.65-3.48]	Illumina [13976150] (imputed)	N
768	chr18	24114805	24114806	rs7242518	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q11.2	NR	rs7242518-G	0.397646	3E-9		0.0188399	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
769	chr18	24156017	24156018	rs7240205	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	NR	rs7240205-T	0.6096	2E-8	(EA)	0.0365	[0.024-0.049] unit decrease	Illumina [~ 11800000] (imputed)	N
769	chr18	24156424	24156425	rs16942421	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	18q11.2	KCTD1	rs16942421-?	0.08	8E-10	(Recessive)	1.68	[1.43-1.98]	Affymetrix [319222]	N
770	chr18	24260538	24260539	rs9953924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q11.2		rs9953924-?	NR	4E-8				NR [~ 8900000] (imputed)	N
770	chr18	24298285	24298286	rs57118264	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	18q11.2	AQP4NRAS1	rs57118264-A	0.0179	4E-6		1.79	[1.44-2.15]	Illumina [64973696] (imputed)	N
770	chr18	24315808	24315809	rs187423924	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		18q11.2	Intergenic	rs187423924-A	0.004	4E-6	(liability model)	0.74	[0.43-1.05] unit increase	NR [19725427] (imputed)	N
770	chr18	24337423	24337424	rs527616	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	18q11.2	NR	rs527616-C	0.36	2E-9		0.012	[0.008-0.016] unit increase	NR [NR]	N
770	chr18	24337423	24337424	rs527616	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	18q11.2		rs527616-C	NR	8E-16		0.95	[0.94-0.96]	Affymetrix, Illumina [NR] (imputed)	N
770	chr18	24337423	24337424	rs527616	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	intergenic	rs527616-G	0.62	7E-15	(EA)	1.0309278	[1.02-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
770	chr18	24337423	24337424	rs527616	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	18q11.2	NR	rs527616-G	0.62	1E-7		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
770	chr18	24337423	24337424	rs527616	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	18q11.2	NR	rs527616-G	0.62	8E-13		1.0526316	[1.03-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
770	chr18	24337423	24337424	rs527616	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	18q11.2	intergenic	rs527616-G	0.62	2E-10		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
770	chr18	24344202	24344203	rs10438989	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	18q11.2		rs10438989-C	0.9915	4E-8		0.3356	[0.22-0.46] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
770	chr18	24357735	24357736	rs511651	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	18q11.2	AQP4-AS1	rs511651-C	0.319	4E-9		2.452	[1.64-3.27] ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
771	chr18	24383918	24383919	rs2339219	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	18q11.2	NR	rs2339219-?	NR	7E-18				Illumina [at least 7383741] (imputed)	N
771	chr18	24386534	24386535	rs16942713	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	18q11.2	AQP4	rs16942713-T	0.2054	5E-11		0.0067	[0.0047-0.0087] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
771	chr18	24393212	24393213	rs16942751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18q11.2		rs16942751-A	NR	3E-11		0.0176	[0.012-0.023] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
771	chr18	24393212	24393213	rs16942751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	18q11.2		rs16942751-A	0.295298	2E-12		0.0223339	[0.016-0.029] unit increase	Illumina [13478778] (imputed)	N
771	chr18	24393212	24393213	rs16942751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q11.2		rs16942751-A	NR	9E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
771	chr18	24393212	24393213	rs16942751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	18q11.2		rs16942751-A	NR	4E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
771	chr18	24393212	24393213	rs16942751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	18q11.2		rs16942751-A	NR	4E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
771	chr18	24393212	24393213	rs16942751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs16942751-A	0.132474	3E-10				Affymetrix, Illumina [24653286] (imputed)	N
771	chr18	24393212	24393213	rs16942751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q11.2	NR	rs16942751-A	0.131818	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
771	chr18	24393212	24393213	rs16942751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18q11.2	AQP4	rs16942751-A	0.1821	2E-13		0.0029	[0.0019-0.0039] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
771	chr18	24393212	24393213	rs16942751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	18q11.2	AQP4	rs16942751-A	0.2865	5E-7		0.0038	[0.0022-0.0054] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
771	chr18	24393212	24393213	rs16942751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	18q11.2	AQP4	rs16942751-A	0.18	2E-10		1.076	[1.052-1.1005]	Affymetrix, Illumina [9585923] (imputed)	N
771	chr18	24393212	24393213	rs16942751	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	18q11.2	KCTD1	rs16942751-C	0.8081	4E-12		6.948	NR z score increase	Illumina [26237160] (imputed)	N
771	chr18	24393212	24393213	rs16942751	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18q11.2	PCAT18, AQP4	rs16942751-?	NR	2E-11				Affymetrix, Illumina [at least 5248638] (imputed)	N
771	chr18	24393212	24393213	rs16942751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	18q11.2	PCAT18, AQP4	rs16942751-?	NR	6E-9		0.02426	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
771	chr18	24393212	24393213	rs16942751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	18q11.2	PCAT18, AQP4	rs16942751-?	NR	3E-9		0.02425	[0.016-0.032] unit increase novel	Illumina [6108953] (imputed)	N
771	chr18	24447785	24447786	rs162005	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18q11.2	PCAT18, AQP4	rs162005-A	0.764	6E-7		0.027	[-0.1886-0.2426] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
771	chr18	24447935	24447936	rs162004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18q11.2		rs162004-G	NR	4E-14		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
771	chr18	24448982	24448983	rs3834826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q11.2		rs3834826-A	NR	5E-21		0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
771	chr18	24449048	24449049	rs151245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q11.2	NR	rs151245-T	NR	3E-13		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
771	chr18	24449048	24449049	rs151245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q11.2	NR	rs151245-T	NR	8E-17		0.0203	[0.016-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr18	24449048	24449049	rs151245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	18q11.2	NR	rs151245-T	NR	6E-14		0.0183	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
771	chr18	24449048	24449049	rs151245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q11.2	NR	rs151245-T	NR	8E-16		0.0197	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
771	chr18	24449102	24449103	rs151246	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	18q11.2	NR	rs151246-?	NR	4E-7		0.02115	[0.013-0.029] unit increase novel	Illumina [6108953] (imputed)	N
771	chr18	24449102	24449103	rs151246	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	18q11.2	NR	rs151246-?	NR	9E-8		0.02169	[0.014-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
771	chr18	24481271	24481272	rs17621185	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	18q11.2		rs17621185-?	NR	3E-8		0.904648	[0.87-0.94]	NR [682398]	N
771	chr18	24484287	24484288	rs3974648	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	18q11.2		rs3974648-C	NR	5E-7		1.0724	NR	Affymetrix [7846216] (imputed)	N
771	chr18	24488489	24488490	rs163045	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q11.2	AQP4-AS1	rs163045-?		6E-6				Illumina [4322238] (imputed)	N
771	chr18	24500615	24500616	rs232320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	18q11.2		rs232320-C	NR	6E-9		0.0624	[0.041-0.083] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
771	chr18	24503506	24503512	rs2307561	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	NR	rs2307561-A	0.2815	8E-18	(EA)	0.0608	[0.047-0.075] unit decrease	Illumina [~ 11800000] (imputed)	N
772	chr18	24517247	24517248	rs16942981	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q11.2	NR	rs16942981-?	NR	1E-7				Affymetrix [NR]	N
772	chr18	24520187	24520187	rs528732638	30563176	Westermair AL	2018-12-05	Biomolecules	Association of Genetic Variation at AQP4 Locus with Vascular Depression.	Severe depressive disorders in coronary artery disease	78 European ancestry cases, 264 European ancestry controls	NA	18q11.2	NR	rs528732638-GAA	0.13	1E-10		3.62	[2.38-5.5]	Affymetrix [6341066] (imputed)	N
772	chr18	24546823	24546824	rs1154214	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	18q11.2	AQP4-AS1	rs1154214-T	0.3963	3E-11		0.2031	[0.14-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
772	chr18	24570666	24570667	rs1436904	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	18q11.2		rs1436904-T	NR	8E-16		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
772	chr18	24570666	24570667	rs1436904	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	CHST9	rs1436904-T	0.6	1E-14	(EA)	1.0526316	[1.03-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
772	chr18	24570666	24570667	rs1436904	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	18q11.2	NR	rs1436904-T	0.6	5E-6		1.0416667	[1.03-1.06]	Affymetrix, Illumina [~ 14000000] (imputed)	N
772	chr18	24570666	24570667	rs1436904	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	18q11.2	NR	rs1436904-T	0.6	3E-8		1.0416667	[1.03-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
772	chr18	24570666	24570667	rs1436904	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	18q11.2	CHST9	rs1436904-T	0.6	3E-8		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 2600000] (imputed)	N
772	chr18	24578549	24578550	rs1175746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST9	5,367 Icelandic ancestry individuals	NA	18q11.2		rs1175746-T	0.4074	9E-26		0.200877	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
772	chr18	24605438	24605439	rs12458099	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q11.2	NR	rs12458099-A	0.4378	1E-12	(EA)	0.0443	[0.032-0.056] unit decrease	Illumina [~ 11800000] (imputed)	N
772	chr18	24610636	24610637	rs75835796	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q11.2	NR	rs75835796-C		5E-6		0.3383	[0.19-0.48] SD units decrease	NR [10700000] (imputed)	N
773	chr18	24654364	24654365	rs77489688	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q11.2	NR	rs77489688-A	0.02439	3E-8	(ACAD11)	0.06624	NR unit increase	Illumina [1671387] (imputed)	N
773	chr18	24687323	24687324	rs9961915	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	18q11.2	CHST9	rs9961915-?	NR	5E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
773	chr18	24687370	24687371	rs9953270	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	18q11.2	CHST9	rs9953270-G	0.31	3E-6		1.3333	[0.66-0.85]	Illumina [1795103]	N
773	chr18	24693220	24693221	rs12607664	34542150	Gergei I	2021-09-20	Hum Mol Genet	GWAS META-analysis followed by MENDELIAN randomisation revealed potential control mechanisms for circulating ?-klotho levels.	Circulating plasma alpha-Klotho levels	4,376 European ancestry individuals	NA	18q11.2	NR	rs12607664-T	0.3161	2E-27		0.243	[0.2-0.29] z score increase	Affymetrix, Illumina [6439450] (imputed)	N
773	chr18	24709603	24709604	rs9952639	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q11.2	CHST9	rs9952639-C	0.318	7E-37	(Carbohydrate sulfotransferase 9, CHST9.11646.4.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
773	chr18	24717702	24717703	rs7233634	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q11.2	CHST9	rs7233634-T	0.66703125	2E-27	(CHST9, 11646_4_3)	0.2801	[0.23-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
773	chr18	24750456	24750457	rs9967454	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHST9	5,367 Icelandic ancestry individuals	NA	18q11.2		rs9967454-C	0.3301	1E-41		0.269695	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
774	chr18	24866048	24866049	rs78788148	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q11.2	intergenic	rs78788148-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
774	chr18	24891605	24891606	rs17636097	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q11.2	AQP4	rs17636097-?	NR	4E-7	(S adenosylhomocysteine)	1.041641	[0.64-1.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
775	chr18	24927433	24927434	rs7230264	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	18q11.2	RP11-739N10	rs7230264-?	NR	9E-7	(adjusted for dose, GFR & AST)	0.65	unit decrease (EA)	Illumina [610255]	N
776	chr18	25070354	25070355	rs4800279	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	18q11.2	AK127888	rs4800279-?	0.06	5E-6				Illumina [565404]	N
776	chr18	25125939	25125940	rs654642	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.1	NR	rs654642-?	NR	1E-6				Affymetrix [NR]	N
776	chr18	25126607	25126608	rs188740444	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs188740444-G		3E-12		0.4904	[0.35-0.63] SD units decrease	NR [10700000] (imputed)	N
776	chr18	25137058	25137059	rs76752096	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	AK127888	rs76752096-A	0.999	8E-9	(AA)	0.431	unit increase	Illumina [NR] (imputed)	N
777	chr18	25167944	25167945	rs1420956	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	RBM22P1	rs1420956-A	0.332	5E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
777	chr18	25223006	25223007	rs192178588	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs192178588-A	0.996	5E-7	(AA)	0.171	unit increase	Illumina [NR] (imputed)	N
777	chr18	25227458	25227459	rs148133787	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18q12.1	Intergenic	rs148133787-C	0.992	6E-7	(AA)	0.208	NR unit increase	Illumina [NR] (imputed)	N
777	chr18	25227458	25227459	rs148133787	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs148133787-C	0.995	2E-6	(AA)	0.682	NR unit increase	Illumina [NR] (imputed)	N
777	chr18	25251707	25251708	rs12232680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.1	NR	rs12232680-T	0.241	1E-9		0.00773264	[0.0053-0.0102] unit decrease	NR [9732723] (imputed)	N
777	chr18	25253296	25253297	rs4476253	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.1	NR	rs4476253-A	0.24	6E-10		0.018486165	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
777	chr18	25261837	25261838	rs148187869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs148187869-A	0.997	3E-7	(AA)	0.228	unit increase	Illumina [NR] (imputed)	N
777	chr18	25262369	25262370	rs146111930	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs146111930-A	0.997	3E-7	(AA)	0.228	unit increase	Illumina [NR] (imputed)	N
777	chr18	25269080	25269081	rs149083189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18q12.1	Intergenic	rs149083189-G	0.996	4E-6	(AA)	0.249	NR unit increase	Illumina [NR] (imputed)	N
777	chr18	25269080	25269081	rs149083189	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs149083189-G	0.998	4E-9	(AA)	0.292	unit increase	Illumina [NR] (imputed)	N
778	chr18	25336962	25336963	rs183815186	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs183815186-T		4E-9		0.3564	[0.24-0.47] SD units increase	NR [10700000] (imputed)	N
778	chr18	25401204	25401205	rs36194942	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	18q12.1		rs36194942-A	NR	3E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [NR] (imputed)	N
778	chr18	25401204	25401205	rs36194942	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	18q12.1	CDH2	rs36194942-A	0.7	3E-7		1.0638298	[1.04-1.1]	Illumina [~ 11500000] (imputed)	N
778	chr18	25401204	25401205	rs36194942	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	18q12.1	CDH2	rs36194942-A	0.7	1E-8		1.0638298	[1.04-1.1] (BCAC)	Illumina [~ 11500000] (imputed)	N
778	chr18	25406854	25406855	rs9959491	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.1	NR	rs9959491-T	0.7115	5E-7	(EA)	0.0345	[0.021-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
779	chr18	25439825	25439826	rs4471777	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	18q12.1		rs4471777-?	NR	7E-6		0.925971	[0.89-0.96]	NR [682398]	N
779	chr18	25457297	25457298	rs4355011	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	18q12.1	CDH2	rs4355011-?		7E-6		0.122	unit increase	Affymetrix [427664]	N
779	chr18	25461744	25461745	rs11083232	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	18q12.1	NR	rs11083232-G	NR	4E-6		0.01294	[0.0074-0.0184] unit decrease	Illumina [541493]	N
779	chr18	25475797	25475798	rs4258701	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	18q12.1	CDH2	rs4258701-T	0.3272	1E-8		0.0385	[0.025-0.052] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
779	chr18	25480513	25480514	rs17492699	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18q12.1	Intergenic	rs17492699-C	0.924	3E-7	(AA)	0.063	NR unit decrease	Illumina [NR] (imputed)	N
779	chr18	25482751	25482752	rs187347133	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.1	NR	rs187347133-?	NR	6E-7		0.0087181	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
779	chr18	25506721	25506722	rs17467739	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	CHST9	rs17467739-?	NR	9E-6	(CE 20:5)	0.49621445	[0.28-0.72] unit decrease	Affymetrix [at least 2500000] (imputed)	N
779	chr18	25545605	25545606	rs1785613	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	CHST9	rs1785613-?	NR	3E-6	(CE 16:1)	0.17059286	[0.099-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
779	chr18	25551960	25551961	rs11083241	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q12.1	Intergenic	rs11083241-A	0.6062	2E-9	(MTAG)	0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
779	chr18	25551960	25551961	rs11083241	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q12.1	NR	rs11083241-?	NR	3E-7		5.134	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
779	chr18	25551960	25551961	rs11083241	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q12.1	CDH2	rs11083241-A	NR	1E-8		0.01703683	[0.011-0.023] unit decrease	Affymetrix [NR]	N
780	chr18	25569057	25569058	rs2298574	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	18q12.1	CDH2	rs2298574-G	0.08	6E-6	(vWF levels)	0.27	[0.15-0.39] IU/dL decrease	Illumina [442728]	N
780	chr18	25569742	25569743	rs1941182	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	18q12.1	CDH2	rs1941182-A		2E-11		0.0058	[0.004-0.0076] unit increase	Affymetrix [13304133] (imputed)	N
780	chr18	25596883	25596884	rs111852224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.1	Intergenic	rs111852224-T	0.1252	4E-12	(MTAG)	0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
780	chr18	25596883	25596884	rs111852224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.1		rs111852224-T	0.1227	5E-13		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
780	chr18	25596883	25596884	rs111852224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.1	Intergenic	rs111852224-T	0.1227	3E-15	(MTAG)	0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
780	chr18	25625630	25625631	rs150440426	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.1	NR	rs150440426-?	NR	5E-6		0.0079734	[0.0045-0.0114] unit increase	Affymetrix [805426] (imputed)	N
780	chr18	25643843	25643844	rs11083244	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18q12.1	NR	rs11083244-T		2E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
780	chr18	25650840	25650841	rs1148375	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.1	CDH2	rs1148375-T	0.4288	2E-8		0.011445831	[0.0074-0.0155] unit decrease	Affymetrix [up to 18485882] (imputed)	N
780	chr18	25656664	25656665	rs1220027	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.1		rs1220027-T	0.2959	3E-13	(conditional-joint)	0.0112	[0.0083-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
780	chr18	25662802	25662803	rs11564403	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q12.1	CDH2	rs11564403-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
780	chr18	25668567	25668568	rs11564398	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	18q12.1	CDH2	rs11564398-T	0.72	4E-12		0.01	unit increase	Affymetrix [8928767] (imputed)	N
781	chr18	25700790	25700791	rs11564386	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	CDH2	rs11564386-G	0.017	8E-6	(Total T3 )	0.03	[NR] ng/dL increase	Illumina [899892]	N
781	chr18	25703734	25703735	rs17446692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.1	Intergenic	rs17446692-C	0.9234	5E-8		0.0233	[0.015-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
781	chr18	25729704	25729705	rs7232172	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.1	NR	rs7232172-?	NR	2E-7				Affymetrix [NR]	N
781	chr18	25766217	25766218	rs11083258	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	18q12.1	CDH2	rs11083258-C	0.17	6E-10		0.2761	[0.19-0.36] unit decrease	Affymetrix [19941912] (imputed)	N
781	chr18	25773015	25773016	rs4800843	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	18q12.1	intergenic	rs4800843-?	NR	3E-6	(SF7)			Affymetrix [5476100] (imputed)	N
781	chr18	25786879	25786880	rs11659841	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	18q12.1	CDH2	rs11659841-?	0.13	9E-6	(PD1)	2.48	[NR]	Illumina [~ 1400000] (imputed)	N
781	chr18	25799958	25799959	rs11564296	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	18q12.1	CDH2, ARIH2P1	rs11564296-G	0.03	7E-6		2.0795	[NR]	Illumina [421909] (imputed)	N
782	chr18	25926058	25926059	rs11083271	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	18q12.1	intergenic	rs11083271-A	0.34	8E-6		0.61	[NR] unit increase	Illumina [324623]	N
782	chr18	25934562	25934563	rs28370576	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	CHST9	rs28370576-?	NR	8E-6	(citrate)	0.2858742	[0.16-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
783	chr18	26059111	26059112	rs4131805	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	18q12.1	intergenic	rs4131805-?	NR	2E-6	(NSAm)			Affymetrix [70897]	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	9E-17	(190 ms)	0.0930194	[0.07-0.116] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	9E-16	(194 ms)	0.087848	[0.065-0.111] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	9E-13	(118 ms)	0.0791564	[0.057-0.102] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	8E-19	(156 ms)	0.097898	[0.075-0.12] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	7E-21	(162 ms)	0.101208	[0.079-0.124] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	7E-20	(166 ms)	0.0994862	[0.077-0.122] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	7E-16	(142 ms)	0.0882226	[0.066-0.111] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	7E-15	(120 ms)	0.0866489	[0.064-0.109] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	6E-13	(104 ms)	0.0799937	[0.057-0.103] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	5E-18	(186 ms)	0.0942913	[0.072-0.117] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	5E-17	(136 ms)	0.0938234	[0.071-0.116] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	5E-16	(192 ms)	0.0888963	[0.066-0.112] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	5E-14	(106 ms)	0.083244	[0.061-0.106] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-9	(86 ms)	0.0634044	[0.041-0.086] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-8	(84 ms)	0.0598853	[0.037-0.083] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-20	(174 ms)	0.101414	[0.079-0.124] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-20	(150 ms)	0.100948	[0.078-0.123] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-19	(172 ms)	0.0973636	[0.075-0.12] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-17	(140 ms)	0.0916524	[0.069-0.114] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	4E-11	(102 ms)	0.0740705	[0.051-0.097] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-20	(164 ms)	0.0999741	[0.077-0.123] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-20	(152 ms)	0.100902	[0.078-0.123] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-18	(188 ms)	0.0945263	[0.072-0.117] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-18	(184 ms)	0.0947808	[0.072-0.117] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-18	(170 ms)	0.0960927	[0.074-0.119] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-18	(158 ms)	0.0956085	[0.073-0.118] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-17	(132 ms)	0.0943187	[0.072-0.117] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-15	(114 ms)	0.0872536	[0.065-0.11] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-12	(108 ms)	0.0772254	[0.055-0.1] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-11	(100 ms)	0.0720695	[0.049-0.095] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	3E-10	(98 ms)	0.0695516	[0.047-0.092] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-9	(94 ms)	0.0681938	[0.046-0.091] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-8	(82 ms)	0.0607306	[0.038-0.083] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-20	(148 ms)	0.10225	[0.08-0.125] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-19	(168 ms)	0.0990486	[0.077-0.122] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-19	(160 ms)	0.0988333	[0.076-0.121] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-18	(182 ms)	0.0957924	[0.073-0.118] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-17	(130 ms)	0.0952055	[0.073-0.118] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-16	(134 ms)	0.0905196	[0.068-0.113] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-16	(122 ms)	0.0926423	[0.07-0.115] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-15	(126 ms)	0.0882259	[0.066-0.111] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-13	(116 ms)	0.080744	[0.058-0.103] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	2E-11	(110 ms)	0.0748844	[0.052-0.097] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	1E-9	(96 ms)	0.0680933	[0.046-0.091] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	1E-9	(88 ms)	0.0656297	[0.043-0.088] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	1E-8	(90 ms)	0.0642213	[0.042-0.087] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	1E-17	(180 ms)	0.0938673	[0.071-0.116] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26121997	26121998	rs11665344	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs11665344-T	0.939154	1E-16	(124 ms)	0.091165	[0.069-0.114] unit increase	Affymetrix [10000000] (imputed)	N
784	chr18	26124687	26124688	rs879500	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	18q12.1	CDH2	rs879500-?		5E-6	(EA)			Illumina [up to 524000]	N
784	chr18	26142055	26142056	rs17677802	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	18q12.1	NR	rs17677802-A	0.06188	4E-6		1.096	[0.48-1.71] unit increase	Illumina [at least 567677] (imputed)	N
784	chr18	26142055	26142056	rs17677802	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	18q12.1	NR	rs17677802-A	0.06164	2E-6		0.7036	[0.29-1.12] unit increase	Illumina [at least 567677] (imputed)	N
785	chr18	26246050	26246051	rs1618992	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	18q12.1	NR	rs1618992-?		2E-6	(genus_Mitsuokella)	0.5096746	[0.31-0.71] unit decrease	Affymetrix [212153]	N
785	chr18	26257942	26257943	rs1692507	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs1692507-?	NR	6E-9				NR [NR]	N
785	chr18	26257942	26257943	rs1692507	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs1692507-?	NR	3E-8				NR [NR]	N
785	chr18	26257942	26257943	rs1692507	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs1692507-?	NR	2E-8				NR [NR]	N
785	chr18	26275175	26275176	rs62085690	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs62085690-?	NR	7E-10				NR [NR]	N
785	chr18	26275175	26275176	rs62085690	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs62085690-?	NR	2E-9				NR [NR]	N
785	chr18	26275175	26275176	rs62085690	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.1		rs62085690-?	NR	2E-9				NR [NR]	N
785	chr18	26312340	26312341	rs12960889	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.1	NR	rs12960889-C	0.568074069026736	4E-9		0.0067254	[0.0045-0.009] unit decrease	NR [NR]	N
785	chr18	26312340	26312341	rs12960889	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.1	NR	rs12960889-C	0.568074069026736	3E-9		0.008764957	[0.0059-0.0117] unit decrease	NR [NR]	N
785	chr18	26312340	26312341	rs12960889	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.1	NR	rs12960889-C	0.568074069026736	6E-9		0.0071506323	[0.0047-0.0096] unit decrease	NR [NR]	N
785	chr18	26312340	26312341	rs12960889	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.1	NR	rs12960889-C	0.568074069026736	3E-9		0.005598481	[0.0038-0.0074] unit decrease	NR [NR]	N
785	chr18	26315798	26315799	rs12454003	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q12.1	NR	rs12454003-G	0.5179	5E-9		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
785	chr18	26316622	26316623	rs62085738	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	18q12.1	intergenic	rs62085738-A	0.228	3E-7		1.06983	[1.04-1.1]	NR [9372253] (imputed)	N
785	chr18	26322004	26322005	rs1496479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.1		rs1496479-?	NR	6E-8				NR [~ 8900000] (imputed)	N
785	chr18	26323524	26323525	rs356833	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.1	intergenic	rs356833-A	0.7496	1E-8		0.1719	[0.11-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
785	chr18	26329053	26329054	rs356926	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.1	intergenic	rs356926-A	0.1575	3E-8		0.1499	[0.097-0.203] mmHg decrease	Affymetrix [NR] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	5E-8	(138 ms)	0.031739	[0.019-0.044] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	4E-9	(166 ms)	0.0348097	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	4E-9	(164 ms)	0.0346361	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	4E-8	(172 ms)	0.0312001	[0.019-0.044] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	4E-8	(170 ms)	0.0315249	[0.019-0.044] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	4E-8	(160 ms)	0.0324352	[0.02-0.045] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	2E-8	(168 ms)	0.0331589	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	2E-8	(162 ms)	0.0332499	[0.021-0.046] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26334628	26334629	rs356907	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	CDH2	rs356907-A	0.254899	2E-8	(146 ms)	0.0330459	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
785	chr18	26339588	26339589	rs11083300	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	18q12.1	CDH2	rs11083300-G	0.46	4E-8		0.35	[0.23-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
785	chr18	26339588	26339589	rs11083300	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	18q12.1	CDH2	rs11083300-G	0.445	2E-7		0.3432	[0.21-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
786	chr18	26379149	26379150	rs56791590	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q12.1	ENSG00000265994	rs56791590-?	NR	8E-9		0.011698486	[0.0077-0.0157] unit increase	NR [7306098]	N
786	chr18	26465108	26465109	rs73951238	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.1	NR	rs73951238-A	0.01394	2E-9	(ME1)	0.1596	NR unit decrease	Illumina [1671387] (imputed)	N
787	chr18	26498336	26498337	rs515665	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	18q12.1	RP11-510D21.2	rs515665-T	0.285	5E-6		0.0327	[0.019-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
787	chr18	26556000	26556001	rs77484855	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.1	intergenic	rs77484855-T	0.926252	2E-8		5.637	z score decrease	Illumina [18485882] (imputed)	N
787	chr18	26570583	26570584	rs7243332	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.1	NR	rs7243332-G	0.305578541661217	1E-10		0.0064302986	[0.0045-0.0084] unit increase	NR [NR]	N
787	chr18	26570583	26570584	rs7243332	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.1	NR	rs7243332-G	0.305578541661217	2E-10		0.007808598	[0.0054-0.0102] unit increase	NR [NR]	N
787	chr18	26570583	26570584	rs7243332	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.1	NR	rs7243332-G	0.305578541661217	2E-10		0.010150131	[0.007-0.0133] unit increase	NR [NR]	N
787	chr18	26570583	26570584	rs7243332	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.1	NR	rs7243332-G	0.305578541661217	4E-10		0.008286721	[0.0057-0.0109] unit increase	NR [NR]	N
787	chr18	26570583	26570584	rs7243332	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.1	NR	rs7243332-G	0.305578541661217	2E-10		0.0064839087	[0.0045-0.0085] unit increase	NR [NR]	N
787	chr18	26606646	26606647	rs2155929	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	18q12.1	CDH2	rs2155929-?	NR	5E-6	(Dysthymic)	1.01	[NR] unit increase	Affymetrix [703012]	N
788	chr18	26676671	26676672	rs4145170	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	18q12.1	AC105245.4	rs4145170-?	NR	3E-6	(Animals)			Illumina [up to 563855]	N
788	chr18	26713276	26713277	rs145717157	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	Intergenic	rs145717157-T	0.999	5E-6	(AA)	1.584	NR unit increase	Illumina [NR] (imputed)	N
788	chr18	26719356	26719357	rs12605558	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18q12.1		rs12605558-A	0.6082	3E-8		0.11019717	[0.065-0.155] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
791	chr18	27020996	27020997	rs10468897	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.1	NR	rs10468897-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
791	chr18	27023286	27023287	rs73412830	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.1	NR	rs73412830-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
791	chr18	27026293	27026294	rs73412846	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.1	NR	rs73412846-?		5E-6	(African)			Illumina [~ 5140000] (imputed)	N
791	chr18	27088611	27088612	rs140520944	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	18q12.1	LOC105372045, MIR302F	rs140520944-T	0.02	4E-13	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
791	chr18	27129069	27129070	rs1361355315	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	18q12.1	NR	rs1361355315-t	0.0036	4E-8		1.54	[1.32-1.79]	Affymetrix, Illumina [16201029] (imputed)	N
792	chr18	27184813	27184814	rs1602735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	CDH2	rs1602735-?	NR	7E-6	(oxalate)	2.265043	[1.27-3.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
792	chr18	27184880	27184881	rs7505784	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	18q12.1	intergenic	rs7505784-C	0.9481	2E-6		0.09291562	[0.054-0.131] unit decrease	Illumina [1632371] (imputed)	N
792	chr18	27221113	27221114	rs79606893	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18q12.1	intergenic	rs79606893-A	NR	6E-9	(EA)			Illumina [up to 11995908] (imputed)	N
792	chr18	27221113	27221114	rs79606893	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18q12.1	intergenic	rs79606893-A	NR	6E-9				Illumina [up to 11995908] (imputed)	N
793	chr18	27389542	27389543	rs1440833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	DSC2	rs1440833-?	NR	4E-6	(pantothenic acid)	0.19422738	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
794	chr18	27501491	27501492	rs1440849	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q12.1	NR	rs1440849-?	NR	5E-8		1.0574961	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
794	chr18	27520798	27520799	rs201687269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	18q12.1	NR	rs201687269-T	0.67465	2E-8		0.00594447	[0.0038-0.008] unit increase	Affymetrix [16582268] (imputed)	N
795	chr18	27535567	27535568	rs9952962	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	18q12.1	MIR302F	rs9952962-C	0.506	2E-8		1.24	[1.15-1.33]	Illumina [569200]	N
795	chr18	27539057	27539058	rs150506821	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	18q12.1	NR	rs150506821-?		6E-6		0.045	[0.025-0.065] unit increase	Illumina [7533529] (imputed)	N
795	chr18	27615635	27615636	rs139481214	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	18q12.1	CDH2, MIR302F	rs139481214-T	0.97	8E-6		1.62	[1.31-2.01]	Affymetrix, Illumina [12148595] (imputed)	N
796	chr18	27676826	27676827	rs7226824	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.1		rs7226824-T	0.5305	3E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
797	chr18	27794346	27794347	rs35242772	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	18q12.1	MIR302F	rs35242772-C	0.356238	1E-6		1.230973	[1.13-1.33]	Affymetrix, Illumina [2928658] (imputed)	N
797	chr18	27797292	27797293	rs4271662	31760383	Guo Y	2019-11-23	Aging (Albany NY)	Genome-wide association study of hippocampal atrophy rate in non-demented elders.	Hippocampal atrophy rate	602 European ancestry elderly individuals	NA	18q12.1	MIR302F	rs4271662-A	0.3606	6E-6		0.003789	NR unit decrease	Illumina [695203]	N
797	chr18	27865837	27865849	rs149384467	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	18q12.1	NR	rs149384467-?		2E-6		0.44	[0.31-0.62]	Illumina [539473] (imputed)	N
798	chr18	27945876	27945877	rs57396456	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs57396456-C		1E-27		0.5626	[0.46-0.66] SD units increase	NR [10700000] (imputed)	N
798	chr18	27956442	27956443	rs6508673	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.1	DSC3	rs6508673-A	0.013	3E-6	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
798	chr18	27985478	27985479	rs4799964	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	18q12.1	MIR302F	rs4799964-G	0.02	1E-6	(EA, 25 years or older)	1.267	[1.152-1.394]	Affymetrix, Illumina [NR] (imputed)	N
798	chr18	28018055	28018056	rs58250641	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.1	NR	rs58250641-C	0.207	5E-9		0.00778202	[0.0052-0.0104] unit decrease	NR [9732723] (imputed)	N
799	chr18	28056958	28056959	rs11083400	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	18q12.1		rs11083400-T	0.45	6E-7				Illumina [6761961] (imputed)	N
799	chr18	28086265	28086266	rs74778900	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs74778900-C		3E-28		0.5906	[0.49-0.69] SD units decrease	NR [10700000] (imputed)	N
799	chr18	28110018	28110019	rs972697	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	18q12.1	NR	rs972697-G	0.205631	8E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
799	chr18	28141687	28141688	rs2729409	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	18q12.1	DSC3	rs2729409-?	0.26	3E-6	(Parathyroid hormone)			Illumina [496032]	N
800	chr18	28257198	28257199	rs11083411	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	18q12.1	DSC3	rs11083411-T	0.5593	9E-9	(Cer d16:1/18:0)	0.1135	[0.074-0.153] unit decrease	Illumina [~ 47000000] (imputed)	N
800	chr18	28267533	28267534	rs7234719	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	18q12.1	intergenic	rs7234719-?	NR	7E-8				Affymetrix [905761]	N
800	chr18	28281948	28281949	rs112452274	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs112452274-G		6E-41		0.8502	[0.73-0.97] SD units decrease	NR [10700000] (imputed)	N
801	chr18	28363622	28363623	rs8086068	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy or supraventricular ectopy (pleiotropy)	1,618 European ancestry supraventricular ectopy cases, 652 African ancestry supraventricular ectopy cases, 354 Hispanic/Latino ancestry supraventricular ectopy cases, 2,468 European ancestry ventricular ectopy cases, 481 African ancestry ventricular ectopy cases, 168 Hispanic/Latino ancestry ventricular ectopy cases, at least 19,586 European ancestry controls, at least 8,141 African ancestry controls, at least 10,663 Hispanic/Latino ancestry controls.	NA	18q12.1	intergenic	rs8086068-A	0.17	4E-8	(African)			Affymetrix, Illumina [NR] (imputed)	N
801	chr18	28363622	28363623	rs8086068	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	18q12.1	DSC3	rs8086068-C	0.17	3E-9	(African)	1.75	[1.46-2.11]	Affymetrix, Illumina [NR] (imputed)	N
801	chr18	28423905	28423906	rs57261374	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	18q12.1	MIR302F, DSC3	rs57261374-G	0.848	1E-6		1.3	[1.17-1.45]	Affymetrix, Illumina [12148595] (imputed)	N
801	chr18	28442342	28442343	rs2014497	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	18q12.1		rs2014497-G	0.0084651	2E-8		1.5		Affymetrix [15611556] (imputed)	N
802	chr18	28482871	28482872	rs117882408	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	18q12.1	DSC3	rs117882408-?	NR	3E-6				Illumina [1464300]	N
802	chr18	28549813	28549814	rs533891011	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	18q12.1	RP11-25I11.1	rs533891011-A	0.0015	7E-6		1.1383	[0.64-1.63] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
802	chr18	28555981	28555982	rs1789041	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs1789041-G		5E-7		0.1254	[0.076-0.175] SD units decrease	NR [10700000] (imputed)	N
803	chr18	28639547	28639548	rs1126214	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	18q12.1	DSC2, DSC3	rs1126214-G	0.41	7E-6	(Dominant model)	1.25	[NR]	Illumina [1795103]	N
803	chr18	28673912	28673913	rs1789063	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q12.1	DSC2	rs1789063-A	0.769	2E-13	(Desmocollin-2, DSC2.13126.52.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
803	chr18	28693897	28693898	rs1790672	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q12.1	DSC2	rs1790672-A	0.883125	1E-7	(DSC2, 13126_52_3)	0.19349355	[0.12-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
804	chr18	28789724	28789725	rs2920001	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		18q12.1	DSC1	rs2920001-?		1E-6	(Cluxel minimum distance)			Illumina [208975]	N
804	chr18	28792997	28792998	rs2920003	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	18q12.1	Intergenic	rs2920003-?	NR	7E-6		1.719	[NR]	Affymetrix [492217] (imputed)	N
804	chr18	28795282	28795283	rs6506897	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18q12.1	intergenic	rs6506897-?	NR	5E-7		0.323	[0.14-0.5] unit decrease	Illumina [at least 13000000] (imputed)	N
804	chr18	28798432	28798433	rs4459623	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18q12.1	intergenic	rs4459623-?	NR	2E-6		0.261	[0.083-0.439] unit decrease	Illumina [at least 13000000] (imputed)	N
804	chr18	28806395	28806396	rs6506900	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	18q12.1	intergenic	rs6506900-?	NR	7E-7		1.926	[0.89-2.96] unit decrease	Illumina [at least 13000000] (imputed)	N
804	chr18	28835119	28835120	rs193112415	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs193112415-C		2E-62		1.0421	[0.92-1.16] SD units increase	NR [10700000] (imputed)	N
805	chr18	28875464	28875465	rs7234316	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar pliability	665 European ancestry individuals	NA	18q12.1	intergenic	rs7234316-A	0.003759	6E-6		2.013	[1.15-2.88] unit decrease	Illumina [298150]	N
805	chr18	28902321	28902322	rs7236477	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	18q12.1	DSG1	rs7236477-G	0.03	7E-6		2.22	[1.39-3.55]	Illumina [~ 550000]	N
805	chr18	28910614	28910615	rs2199301	24629169	Ising M	2014-04-08	Genes Brain Behav	Genetic effects on information processing speed are moderated by age--converging results from three samples.	perceptual and visual search speed (trail making test A) (age interaction)	890 European ancestry individuals	NA	18q12.1	DSG1	rs2199301-A	0.49	1E-7		21.67		Illumina [~ 290000]	N
805	chr18	28918197	28918198	rs200520431	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	18q12.1	DSG1	rs200520431-?	0.07	2E-16		0.11	[0.09-0.12] unit increase	Illumina [at least 560000] (imputed)	N
805	chr18	28918627	28918628	rs9946771	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	18q12.1		rs9946771-?	NR	9E-9		0.0233992	[0.015-0.031] unit decrease	NR [6912294] (imputed)	N
805	chr18	28919793	28919794	rs8091117	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	18q12.1		rs8091117-C	0.934702	1E-10		0.026	[0.018-0.034] unit decrease	NR [7250403] (imputed)	N
805	chr18	28919793	28919794	rs8091117	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	18q12.1	NR	rs8091117-A	0.065396	1E-9		0.024071	[0.016-0.032] unit decrease	Affymetrix [16668957] (imputed)	N
805	chr18	28933072	28933073	rs562347862	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q12.1		rs562347862-?	NR	6E-9				Affymetrix [NR] (imputed)	N
805	chr18	28934373	28934374	rs78995670	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT6	5,362 Icelandic ancestry individuals	NA	18q12.1		rs78995670-G	0.0145	9E-43		1.04341	[0.89-1.19] unit increase	Illumina [7506463] (imputed)	N
806	chr18	28996626	28996627	rs4799571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	18q12.1	DSG1-AS1	rs4799571-A	0.7312	1E-6		0.1573	[0.094-0.221] unit increase	NR [NR] (imputed)	N
806	chr18	28996626	28996627	rs4799571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	18q12.1	DSG1-AS1	rs4799571-A	0.7258	3E-6		0.153	[0.089-0.217] unit increase	NR [NR] (imputed)	N
806	chr18	28996626	28996627	rs4799571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	18q12.1	DSG1-AS1	rs4799571-A	0.7312	1E-6	(female)	0.1219	[0.073-0.171] unit increase	NR [NR] (imputed)	N
806	chr18	28996626	28996627	rs4799571	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	18q12.1	DSG1-AS1	rs4799571-A	0.7258	2E-6	(female)	0.1211	[0.071-0.171] unit increase	NR [NR] (imputed)	N
806	chr18	29006622	29006623	rs73412205	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (edema)	1,109 Japanese ancestry female cases, 4,625 Japanese ancestry female controls	1,331 Japanese ancestry female cases, 4,283 Japanese ancestry female controls	18q12.1	NR	rs73412205-C	0.187663078	6E-6		0.19654813	[0.11-0.28] unit decrease	Affymetrix [536506]	N
806	chr18	29008593	29008594	rs117618570	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs117618570-G		6E-36		0.5294	[0.45-0.61] SD units increase	NR [10700000] (imputed)	N
806	chr18	29038122	29038123	rs1941184	19772629	Latourelle JC	2009-09-22	BMC Med Genet	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	18q12.1	DSG3	rs1941184-C	NR	4E-6		2.28	[NR] years decrease	Illumina, Perlegen [1861750] (imputed)	N
806	chr18	29041733	29041734	rs3794924	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	18q12.1	DSG3	rs3794924-?		4E-6	(overall survival)	2.37	[1.65-3.43]	Illumina [729737]	N
806	chr18	29087972	29087973	rs2212617	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q12.1	DSG2	rs2212617-A	0.6021875	1E-8	(DSG2, 9484_75_3)	0.13650674	[0.09-0.183] unit increase	Illumina [> 1000000] (imputed)	N
806	chr18	29088957	29088958	rs8093731	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q12.1		rs8093731-T	0.01866	8E-7		33.788486	z score increase	NR [6814003]	N
806	chr18	29088957	29088958	rs8093731	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	18q12.1	SUZ12P1	rs8093731-T	NR	5E-8		5.4649644	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
806	chr18	29095433	29095434	rs2704052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DSG2	5,368 Icelandic ancestry individuals	NA	18q12.1		rs2704052-G	0.4537	5E-17		0.155224	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
806	chr18	29095887	29095888	rs2704050	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q12.1	DSG2	rs2704050-G	0.493	9E-12	(Desmoglein-2, DSG2.9484.75.3)	0.17	[0.13-0.21] unit decrease	Affymetrix [10572788] (imputed)	N
807	chr18	29187278	29187279	rs1667255	21878437	Mondul AM	2011-08-30	Hum Mol Genet	Genome-wide association study of circulating retinol levels.	Retinol levels	5,006 European ancestry individuals	1,124 European ancestry individuals, 3,764 individuals	18q12.1	TTR	rs1667255-C	0.31	6E-14		0.03	[0.02-0.04] ug/L increase	Illumina [562105]	N
807	chr18	29213359	29213359	rs201022770	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q12.1	B4GALT6	rs201022770-CT	0.043	2E-77	(Beta-1,4-galactosyltransferase 6, B4GALT6.10832.24.3)	1.08	[0.96-1.2] unit decrease	Affymetrix [10572788] (imputed)	N
807	chr18	29216313	29216314	rs113222817	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT6	5,362 Icelandic ancestry individuals	NA	18q12.1		rs113222817-G	0.03642	1E-132		1.14796	[1.06-1.24] unit decrease	Illumina [7506463] (imputed)	N
807	chr18	29216313	29216314	rs113222817	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q12.1	B4GALT6	rs113222817-T	0.96515625	8E-71	(B4GALT6, 10832_24_3)	1.1433629	[1.02-1.27] unit increase	Illumina [> 1000000] (imputed)	N
807	chr18	29226207	29226208	rs1667284	29082582	Almli LM	2017-10-30	Addict Biol	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.	Problematic alcohol use in trauma-exposed individuals	1,036 African American individuals	828 European ancestry individuals, 108 African ancestry individuals, 282 Hispanic and Native American individuals, 170 other ancestry individuals, 6 Asian individuals	18q12.1	B4GALT6	rs1667284-A	0.14	4E-6	(AA, initial)	2.2	[1.28-3.12] unit increase	Illumina [501278]	N
808	chr18	29230976	29230977	rs62093514	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs62093514-C		7E-82		1.0618	[0.95-1.17] SD units decrease	NR [10700000] (imputed)	N
808	chr18	29246206	29246207	rs9973109	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q12.1	NR	rs9973109-C	0.008	2E-41	(Beta-1,4-galactosyltransferase 6, B4GALT6.10832.24.3)	1.98	[1.69-2.27] unit increase	Affymetrix [10572788] (imputed)	N
808	chr18	29261339	29261340	rs8092508	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18q12.1	B4GALT6	rs8092508-C	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
808	chr18	29273128	29273129	rs10438933	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	18q12.1	B4GALT6	rs10438933-G	0.12	1E-6	(susceptibilty)	1.3	[NR]	Illumina [288357]	N
808	chr18	29306736	29306737	rs113107469	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Free thyroxine concentration	2,287 European ancestry whole-genome sequenced individuals, 11,364 European ancestry individuals	NA	18q12.1	B4GALT6	rs113107469-T	0.032	1E-9		0.223	[0.15-0.3] unit increase	Illumina [at least 9558836] (imputed)	N
808	chr18	29336590	29336591	rs10502575	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q12.1	MCART2	rs10502575-A	0.83	1E-7	(AA)	0.22	[0.14-0.3] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
810	chr18	29535265	29535266	rs142895115	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs142895115-C		6E-141		1.7565	[1.62-1.89] SD units increase	NR [10700000] (imputed)	N
810	chr18	29573524	29573525	rs11663063	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	18q12.1	intergenic	rs11663063-?	0.04	9E-6	(women)	0.4	NR unit decrease	Illumina [628376]	N
811	chr18	29655790	29655791	rs62093946	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	18q12.1	NR	rs62093946-?	NR	3E-15	(TRAIL)	2.17489	[1.64-2.71] unit increase	Illumina [11901634] (imputed)	N
811	chr18	29655790	29655791	rs62093946	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs62093946-C		3E-128		1.5657	[1.44-1.69] SD units increase	NR [10700000] (imputed)	N
811	chr18	29691941	29691942	rs190199074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT6	5,362 Icelandic ancestry individuals	NA	18q12.1		rs190199074-C	0.01034	5E-30		1.02831	[0.85-1.21] unit increase	Illumina [7506463] (imputed)	N
811	chr18	29749193	29749194	rs8093507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.1		rs8093507-?	NR	1E-12				NR [~ 8900000] (imputed)	N
812	chr18	29769909	29769910	rs144242131	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	18q12.1	NR	rs144242131-?	NR	1E-16	(TRAIL)	2.3155	[1.77-2.86] unit increase	Illumina [11901634] (imputed)	N
812	chr18	29772975	29772976	rs2289543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q12.1		rs2289543-C	NR	3E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
812	chr18	29783352	29783353	rs192989810	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	MEP1B	rs192989810-C		8E-175		2.2207	[2.07-2.37] SD units decrease	NR [10700000] (imputed)	N
812	chr18	29797920	29797921	rs616114	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LCT	5,365 Icelandic ancestry individuals	NA	18q12.1		rs616114-T	0.3994	3E-19		0.173321	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
812	chr18	29797957	29797958	rs680321	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q12.1	GAREM	rs680321-T	0.543443	1E-8		0.0108871	[0.0071-0.0146] unit decrease	Affymetrix [NR] (imputed)	N
812	chr18	29800118	29800119	rs673408	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	18q12.1		rs673408-A	0.54	2E-13		0.0768	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
812	chr18	29884186	29884187	rs112394247	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs112394247-C		1E-8		0.1983	[0.13-0.27] SD units increase	NR [10700000] (imputed)	N
813	chr18	29899066	29899067	rs736218	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.1	MEP1B	rs736218-?	NR	5E-6	(uric acid)	0.2877334	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
813	chr18	29977688	29977689	rs117618124	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	18q12.1		rs117618124-T	NR	1E-11		1.11	[1.08-1.15]	Affymetrix, Illumina [NR] (imputed)	N
813	chr18	29977688	29977689	rs117618124	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.1	GAREM1	rs117618124-T	0.95	6E-12	(EA)	1.1235955	[1.09-1.18] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
813	chr18	29977688	29977689	rs117618124	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	18q12.1	NR	rs117618124-T	0.95	5E-6		1.1904762	[1.1-1.3] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
813	chr18	29979574	29979575	rs58263042	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	18q12.1	NOL4	rs58263042-C	0.061	9E-6		0.165	[0.092-0.238] cup size decrease	Illumina [7422970] (imputed)	N
813	chr18	30003321	30003322	rs11081761	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	18q12.1	GAREM	rs11081761-A	0.15	1E-8		0.2669	[0.17-0.36] unit decrease	Affymetrix [19941912] (imputed)	N
814	chr18	30020074	30020075	rs17744051	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	18q12.1	GAREM	rs17744051-C	0.1589	4E-14		0.6857	[0.51-0.86] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
814	chr18	30029140	30029141	rs982521	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	18q12.1	GAREM	rs982521-C	0.2261	2E-6	(Hispanic/Latino)	1.4982	[0.89-2.11] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
814	chr18	30029140	30029141	rs982521	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	18q12.1	GAREM	rs982521-C	0.18	2E-18		0.75	[0.57-0.93] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
814	chr18	30032524	30032525	rs17744182	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	18q12.1	NR	rs17744182-?	NR	6E-6		1.97753	[1.12-2.84] unit increase	Illumina [26703325] (imputed)	N
814	chr18	30032524	30032525	rs17744182	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	PR interval	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	18q12.1	GAREM	rs17744182-A	0.39	6E-8		1.43	[NR] unit increase	Affymetrix [2100000] (imputed)	N
814	chr18	30049609	30049610	rs75154329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.1		rs75154329-?	NR	5E-8				NR [~ 8900000] (imputed)	N
814	chr18	30053149	30053150	rs11081767	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,253 European ancestry individuals	NA	18q12.1	GAREM	rs11081767-A	0.466	2E-6				NR [2411113] (imputed)	N
814	chr18	30053149	30053150	rs11081767	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x quantitative lifestyle risk score interaction (1df test)	6,253 European ancestry individuals	NA	18q12.1	GAREM	rs11081767-A	0.466	7E-7		0.43	[0.25-0.61] unit decrease	NR [2411113] (imputed)	N
814	chr18	30053149	30053150	rs11081767	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure	6,253 European ancestry individuals	NA	18q12.1	GAREM	rs11081767-A	0.466	2E-6		1.11	[0.64-1.58] unit increase	NR [~ 24000000] (imputed)	N
814	chr18	30076724	30076725	rs189585165	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs189585165-G		2E-9		0.3096	[0.21-0.41] SD units increase	NR [10700000] (imputed)	N
814	chr18	30077858	30077859	rs11874741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in systole	19,586 Japanese ancestry individuals	NA	18q12.1	GAREM1, WBP11P1	rs11874741-?	NR	5E-8		0.05786	[0.037-0.079] unit increase	Illumina [6108953] (imputed)	N
814	chr18	30077858	30077859	rs11874741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in diastole	19,676 Japanese ancestry individuals	NA	18q12.1	GAREM1, WBP11P1	rs11874741-?	NR	5E-8		0.0576	[0.037-0.078] unit increase	Illumina [6108953] (imputed)	N
814	chr18	30106281	30106282	rs191218575	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.1	NR	rs191218575-A	0.0195	8E-6	(EA)	0.1234	[0.069-0.177] unit decrease	Illumina [~ 11800000] (imputed)	N
814	chr18	30132706	30132707	rs12326871	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.1	NR	rs12326871-?	NR	3E-10				Affymetrix [NR]	N
815	chr18	30263491	30263492	rs1403755	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	18q12.1		rs1403755-T	0.08665	9E-9		0.2696	[0.18-0.36] unit increase	Illumina [18189521] (imputed)	N
816	chr18	30365410	30365411	rs79214303	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	18q12.1	NR	rs79214303-A	0.07	8E-6		1.14	[1.08-1.2]	Illumina [8468885] (imputed)	N
816	chr18	30366246	30366247	rs138987090	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs138987090-G		5E-23		0.7497	[0.6-0.9] SD units increase	NR [10700000] (imputed)	N
817	chr18	30458623	30458624	rs34064038	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q12.1	intergenic	rs34064038-A	0.221637	5E-6	(males)	0.002175	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
818	chr18	30554351	30554352	rs78221829	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.1	NR	rs78221829-T	0.01742	4E-9	(AKR1C2)	0.8731	NR unit increase	Illumina [1671387] (imputed)	N
818	chr18	30614855	30614856	rs142496819	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs142496819-C		3E-6		0.1833	[0.1-0.26] SD units decrease	NR [10700000] (imputed)	N
818	chr18	30625008	30625009	rs190650493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.1	C18orf34	rs190650493-G	0.999	3E-6	(AA)	0.362	unit increase	Illumina [NR] (imputed)	N
820	chr18	30859535	30859536	rs141032096	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs141032096-G		4E-7		0.2268	[0.14-0.32] SD units increase	NR [10700000] (imputed)	N
821	chr18	30998130	30998131	rs6507022	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	18q12.1	C18orf34	rs6507022-C		9E-6		0.04	[0.02-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
821	chr18	31015947	31015948	rs145172905	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs145172905-G		6E-6		0.1809	[0.1-0.26] SD units decrease	NR [10700000] (imputed)	N
822	chr18	31088077	31088078	rs76650652	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q12.1	intergenic	rs76650652-A	0.011	2E-6		5.86	[2.59-13.3]	Illumina [1556551]	N
822	chr18	31161425	31161426	rs10164193	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	18q12.1	ASXL3	rs10164193-T	0.9223	2E-11		0.2196	[0.16-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
822	chr18	31168981	31168982	rs7226575	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.1	ASXL3	rs7226575-T	0.8304	6E-12		0.2999	[0.21-0.39] mmHg decrease	Affymetrix [NR] (imputed)	N
822	chr18	31192528	31192529	rs12953422	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.1		rs12953422-A	0.5847	2E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
823	chr18	31204967	31204968	rs138807553	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q12.1	Intergenic	rs138807553-?		2E-6		1.15	[1.08-1.22]	Illumina [7645193] (imputed)	N
823	chr18	31204967	31204968	rs138807553	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q12.1	Intergenic	rs138807553-?		2E-6		3.57	[2.12-6.01]	Illumina [7645193] (imputed)	N
823	chr18	31208659	31208660	rs8084619	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.1	Intergenic	rs8084619-A	0.479	1E-12	(MTAG)	0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
823	chr18	31212208	31212209	rs12957987	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.1	Intergenic	rs12957987-A	0.476	2E-11	(MTAG)	0.0088	[0.0063-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
823	chr18	31214949	31214950	rs7228141	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.1	Intergenic	rs7228141-G	0.472	1E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
823	chr18	31223775	31223776	rs1941706	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.1	NR	rs1941706-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
823	chr18	31246243	31246244	rs55916387	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q12.1	NR	rs55916387-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
823	chr18	31246593	31246594	rs4799707	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	18q12.1		rs4799707-G	0.446946	4E-8		0.0216674	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
823	chr18	31248322	31248323	rs6507054	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q12.1	ASXL3	rs6507054-T	0.415805	3E-11		0.00928368	[0.0066-0.012] unit decrease	Affymetrix [12370749]	N
823	chr18	31248322	31248323	rs6507054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.1		rs6507054-?	NR	8E-12				NR [~ 8900000] (imputed)	N
823	chr18	31251087	31251088	rs11081818	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q12.1	NR	rs11081818-A	NR	1E-15		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
823	chr18	31251275	31251276	rs1941697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q12.1		rs1941697-A	NR	1E-9		0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
823	chr18	31251275	31251276	rs1941697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q12.1		rs1941697-A	NR	3E-11		0.0132	[0.0093-0.0171] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
823	chr18	31251275	31251276	rs1941697	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q12.1	NA	rs1941697-A	0.4466	8E-13		0.0122	[0.0089-0.0155] unit increase	NR [~ 27400000] (imputed)	N
823	chr18	31266740	31266741	rs4799710	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	18q12.1	ASXL3	rs4799710-?	NR	7E-6	(FVC)			Affymetrix [246010]	N
823	chr18	31286128	31286129	rs9952522	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	18q12.1	NR	rs9952522-C	0.4084	2E-8		0.01074	[0.007-0.0145] unit decrease	NR [8968716] (imputed)	N
823	chr18	31294260	31294261	rs1155156	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.1	NR	rs1155156-A	0.601788067300338	1E-10		0.008061787	[0.0056-0.0105] unit increase	NR [NR]	N
823	chr18	31304317	31304318	rs1941685	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	18q12.1	ASXL3	rs1941685-T	0.4983	2E-8		0.0531	[0.035-0.072] unit increase	NR [7784415] (imputed)	N
823	chr18	31313964	31313965	rs12605642	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q12.1	NR	rs12605642-T	0.4864	2E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
823	chr18	31321993	31321994	rs16964886	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q12.1	ASXL3, C18orf34, NOL4	rs16964886-A	0.007	5E-6		6.77	[2.62-17.46]	Illumina [1556551]	N
824	chr18	31328719	31328720	rs9947894	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	18q12.1	ASXL3	rs9947894-G	0.5	9E-6		0.74	[0.41-1.07] g/day increase	Affymetrix [10353649] (imputed)	N
824	chr18	31334666	31334667	rs1941687	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	18q12.1	NR	rs1941687-A	0.5982	5E-10		0.0117	[0.008-0.0154] unit increase	Illumina [NR] (imputed)	N
824	chr18	31334666	31334667	rs1941687	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	18q12.1	NR	rs1941687-A	0.5964	4E-6		0.0122	[0.007-0.0174] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
824	chr18	31335158	31335158	rs112420109	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs112420109-AC		2E-7		0.3253	[0.2-0.45] SD units increase	NR [10700000] (imputed)	N
824	chr18	31339350	31339351	rs12608181	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	18q12.1	NR	rs12608181-G	0.5007	2E-8		0.012	[0.0079-0.0161] unit increase	Illumina [NR] (imputed)	N
824	chr18	31339350	31339351	rs12608181	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	18q12.1	NR	rs12608181-T	0.4968	5E-6		0.013420908	[0.0076-0.0192] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
824	chr18	31347097	31347098	rs10432169	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	18q12.1	NR	rs10432169-G	0.3811	2E-9		0.014	[0.0095-0.0185] unit decrease	Illumina [NR] (imputed)	N
824	chr18	31349071	31349072	rs4534926	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	18q12.1	NR	rs4534926-C	NR	9E-9		1.03	[1.02-1.04]	NR [NR] (imputed)	N
824	chr18	31362326	31362327	rs1493914	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.1	NR	rs1493914-T	0.513492656851565	1E-11		0.006258011	[0.0045-0.0081] unit increase	NR [NR]	N
824	chr18	31362326	31362327	rs1493914	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.1	NR	rs1493914-T	0.513492656851565	2E-11		0.0077103563	[0.0054-0.01] unit increase	NR [NR]	N
824	chr18	31362326	31362327	rs1493914	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.1	NR	rs1493914-T	0.513492656851565	2E-11		0.010032487	[0.0071-0.013] unit increase	NR [NR]	N
824	chr18	31362326	31362327	rs1493914	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.1	NR	rs1493914-T	0.513492656851565	2E-11		0.006470501	[0.0046-0.0084] unit increase	NR [NR]	N
824	chr18	31367049	31367050	rs4799723	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.1	NR	rs4799723-T	NR	2E-8		0.01342	[0.0087-0.0181] unit decrease	Affymetrix [10847151] (imputed)	N
824	chr18	31390867	31390868	rs60241046	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q12.1	ASXL3, NOL4	rs60241046-A	0.018	7E-6		4.48	[2.19-9.17]	Illumina [1556551]	N
824	chr18	31392576	31392577	rs1493916	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	18q12.1	NR	rs1493916-T	0.5209	8E-6		0.0159	[0.0089-0.0229] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
824	chr18	31413670	31413671	rs10460050	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	18q12.1	NR	rs10460050-T	0.420586	9E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
824	chr18	31413678	31413679	rs10460051	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.1	NR	rs10460051-T	NR	3E-9		5.934	z score increase	Affymetrix [10847151] (imputed)	N
824	chr18	31413678	31413679	rs10460051	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q12.1	ASXL3	rs10460051-T	0.491209	3E-10		6.31	z score increase	NR [10847151] (imputed)	N
824	chr18	31413803	31413804	rs11876492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q12.1		rs11876492-?	NR	2E-10				NR [~ 8900000] (imputed)	N
824	chr18	31420009	31420010	rs1013696	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	18q12.1	intergenic	rs1013696-?	0.22	4E-6	(genotype x drug)	17.8	[NR] unit decrease	Illumina [539391]	N
824	chr18	31424982	31424983	rs11659939	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	18q12.1	NOL4	rs11659939-A	0.287348	6E-6		0.745	[0.655 - 0.847]	Illumina [5400100] (imputed)	N
824	chr18	31425274	31425275	rs72953382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.1	Intergenic	rs72953382-A	0.2558	1E-8	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
824	chr18	31441919	31441920	rs142429341	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q12.1	NR	rs142429341-?	NR	4E-6	(EA)	0.3124	[0.18-0.44] unit decrease	Illumina [up to 11892802] (imputed)	N
825	chr18	31570016	31570017	rs140336684	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs140336684-T		5E-38		1.2937	[1.1-1.49] SD units decrease	NR [10700000] (imputed)	N
825	chr18	31582889	31582890	rs17747955	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q12.1	NR	rs17747955-C	0.4496	2E-8		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
826	chr18	31591458	31591459	rs12327082	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q12.1	NOL4	rs12327082-T	NR	5E-7	(EA)	1.0559661	[1.03-1.08]	Illumina [6627481] (imputed)	N
826	chr18	31591458	31591459	rs12327082	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q12.1	NOL4	rs12327082-T	NR	3E-7		1.0548522	[1.03-1.08]	Illumina [6627481] (imputed)	N
826	chr18	31591458	31591459	rs12327082	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q12.1	intergenic	rs12327082-T	NR	7E-8		1.0570824	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
826	chr18	31595532	31595533	rs1941342	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q12.1	NR	rs1941342-A	NR	1E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
826	chr18	31610847	31610848	rs34728579	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	18q12.1	NOL4	rs34728579-C		1E-14		0.0082	[0.006-0.0104] unit increase	Affymetrix [13304133] (imputed)	N
826	chr18	31612424	31612425	rs1941355	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	18q12.1	NR	rs1941355-C	NR	1E-8		0.01378	NR unit increase	NR [7259579]	N
826	chr18	31612424	31612425	rs1941355	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.1	NR	rs1941355-A	NR	4E-9		5.906	z score decrease	Affymetrix [10847151] (imputed)	N
826	chr18	31612424	31612425	rs1941355	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q12.1	NOL4	rs1941355-A	0.368174	1E-9		6.1	z score decrease	NR [10847151] (imputed)	N
826	chr18	31624867	31624868	rs7240888	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	18q12.1		rs7240888-C	NR	4E-6		1.543	[0.89-2.2] unit decrease	NR [534934]	N
826	chr18	31645378	31645379	rs7239368	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	18q12.1	NOL4	rs7239368-?	0.42	9E-6	(remission)	1.45	[1.22-1.69]	Affymetrix [430198]	N
826	chr18	31663653	31663654	rs4419127	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q12.1	NOL4	rs4419127-A	0.6622	8E-30		1.0446		Affymetrix [11880941] (imputed)	N
826	chr18	31663653	31663654	rs4419127	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q12.1	NOL4	rs4419127-A	0.6622	8E-30		1.0454004		Affymetrix [11880941] (imputed)	N
826	chr18	31664709	31664710	rs4239386	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q12.1		rs4239386-A	0.3342	2E-17		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
826	chr18	31664709	31664710	rs4239386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q12.1		rs4239386-?	NR	2E-12				NR [~ 8900000] (imputed)	N
826	chr18	31675679	31675680	rs12965577	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	18q12.1	NOL4	rs12965577-A	0.66	2E-8		1.0638298		Illumina [7427422] (imputed)	N
826	chr18	31690667	31690668	rs4395148	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	18q12.1	NR	rs4395148-T	0.308	2E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
826	chr18	31696074	31696075	rs7505855	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	18q12.1	NOL4	rs7505855-C		9E-9		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
826	chr18	31696074	31696075	rs7505855	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.1	NR	rs7505855-T	0.586	5E-11		0.016981782	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
826	chr18	31703063	31703064	rs9945304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q12.1		rs9945304-?	NR	2E-9				NR [~ 8900000] (imputed)	N
827	chr18	31762683	31762684	rs12604999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.1	NR	rs12604999-T	0.502	9E-13		0.0077663	[0.0056-0.0099] unit decrease	NR [9732723] (imputed)	N
827	chr18	31767684	31767685	rs12456222	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q12.1	NOL4	rs12456222-T	0.7345	9E-23		1.0433		Affymetrix [11880941] (imputed)	N
827	chr18	31795629	31795630	rs182652761	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs182652761-C		4E-6		0.5999	[0.35-0.85] SD units increase	NR [10700000] (imputed)	N
828	chr18	31897548	31897549	rs12966221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.1	Intergenic	rs12966221-A	0.8846	6E-9	(MTAG)	0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
828	chr18	31897548	31897549	rs12966221	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.1	Intergenic	rs12966221-A	0.8847	7E-9	(MTAG)	0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
828	chr18	31906360	31906361	rs4422049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.1	Intergenic	rs4422049-T	0.8676	3E-8		0.0159	[0.01-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
828	chr18	31929246	31929247	rs72963233	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q12.1	NR	rs72963233-C	NR	4E-6		1.1235955	[NR]	Illumina [7158791] (imputed)	N
829	chr18	31991522	31991522	rs144747718	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	18q12.1	NR	rs144747718-?	NR	4E-6		0.0892	[0.052-0.127] unit decrease	Illumina [at least 560000] (imputed)	N
829	chr18	32015227	32015228	rs2049186	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	18q12.1	NOL4, DTNA	rs2049186-T	0.45	8E-6	(women)	0.075	[0.042-0.108] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
829	chr18	32028142	32028143	rs72965213	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs72965213-C		9E-11		0.3636	[0.25-0.47] SD units decrease	NR [10700000] (imputed)	N
830	chr18	32219669	32219670	rs144916876	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs144916876-G		1E-9		0.3404	[0.23-0.45] SD units decrease	NR [10700000] (imputed)	N
830	chr18	32233905	32233906	rs12961876	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	18q12.1	NR	rs12961876-?	NR	6E-6		8.73	[4.96-12.5] unit increase	Illumina [552487]	N
831	chr18	32307129	32307130	rs1480432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.1	Intergenic	rs1480432-T	0.6843	5E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
831	chr18	32309845	32309846	rs17643207	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q12.1	NOL4, DT	rs17643207-A	0.9185	3E-9		0.0184417	[0.012-0.025] unit increase	Affymetrix [11880941] (imputed)	N
831	chr18	32350805	32350806	rs1842413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.1	Intergenic	rs1842413-A	0.1565	7E-11	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
831	chr18	32350805	32350806	rs1842413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.1	Intergenic	rs1842413-A	0.1565	6E-10		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
831	chr18	32351695	32351696	rs79495154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.1	Intergenic	rs79495154-A	0.8565	1E-11	(MTAG)	0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
831	chr18	32367578	32367579	rs72955191	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.1	NR	rs72955191-G		1E-7		0.2386	[0.15-0.33] SD units decrease	NR [10700000] (imputed)	N
832	chr18	32392243	32392244	rs76038129	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18q12.1	DTNA	rs76038129-?	NR	9E-6		0.211	[0.084-0.338] unit increase	Illumina [at least 13000000] (imputed)	N
832	chr18	32399258	32399259	rs1786595	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	18q12.1	DTNA	rs1786595-C	0.74	7E-11		0.47	[0.33-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
832	chr18	32409570	32409571	rs1790534	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	18q12.1	DTNA	rs1790534-T	0.7325	3E-11		0.4962	[0.35-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
833	chr18	32540935	32540936	rs115950568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.1	NR	rs115950568-A	0.0122	4E-9	(RPS18)	0.2117	NR unit increase	Illumina [1671387] (imputed)	N
833	chr18	32540935	32540936	rs115950568	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.1	NR	rs115950568-A	0.0122	2E-9	(TGM2)	1.944	NR unit increase	Illumina [1671387] (imputed)	N
833	chr18	32546595	32546596	rs28589923	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	18q12.1	intergenic	rs28589923-?	NR	3E-6		1.479	[0.71-2.25] unit increase	Illumina [at least 13000000] (imputed)	N
833	chr18	32546595	32546596	rs28589923	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18q12.1	intergenic	rs28589923-?	NR	2E-6		0.309	[0.17-0.45] unit increase	Illumina [at least 13000000] (imputed)	N
833	chr18	32559294	32559295	rs509477	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid AB1-42 levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	18q12.1	MAPRE2	rs509477-C	0.6	3E-7		0.0653	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
833	chr18	32581518	32581519	rs16966292	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.1	NR	rs16966292-?	NR	2E-10				Affymetrix [NR]	N
833	chr18	32621230	32621231	rs530081	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q12.1		rs530081-A	0.33	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
833	chr18	32621230	32621231	rs530081	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	18q12.1	NR	rs530081-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
833	chr18	32634633	32634634	rs7228414	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	18q12.1		rs7228414-?	NR	3E-8				NR [9705931] (imputed)	N
834	chr18	32640804	32640805	rs7242309	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18q12.1		rs7242309-C	0.45	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
834	chr18	32643291	32643292	rs184926585	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	18q12.1		rs184926585-T	NR	1E-7		0.0217	[0.014-0.029] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
834	chr18	32643291	32643292	rs184926585	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	18q12.1		rs184926585-T	0.92	5E-11		0.007	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
834	chr18	32650340	32650341	rs3744923	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	18q12.1		rs3744923-G	0.45	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
834	chr18	32650340	32650341	rs3744923	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18q12.1	NR	rs3744923-G	0.4697	3E-10				NR [9056863] (imputed)	N
834	chr18	32650340	32650341	rs3744923	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q12.1	NR	rs3744923-G	0.4697	2E-8				NR [9056863] (imputed)	N
834	chr18	32670020	32670021	rs476348	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	18q12.1	MAPRE2	rs476348-C	0.69	3E-9		1.25	[1.16 - 1.33]	Affymetrix, Illumina [6990521] (imputed)	N
834	chr18	32670020	32670021	rs476348	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	MAPRE2	rs476348-T	0.294285	5E-10	(-38 ms)	0.0385135	[0.026-0.051] unit increase	Affymetrix [10000000] (imputed)	N
834	chr18	32670020	32670021	rs476348	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	MAPRE2	rs476348-T	0.294285	2E-9	(-40 ms)	0.0370719	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
834	chr18	32670020	32670021	rs476348	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	MAPRE2	rs476348-T	0.294285	2E-9	(-36 ms)	0.037067	[0.025-0.049] unit increase	Affymetrix [10000000] (imputed)	N
834	chr18	32670020	32670021	rs476348	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.1	MAPRE2	rs476348-T	0.294285	1E-9	(-34 ms)	0.036326	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
834	chr18	32732873	32732874	rs10502642	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	18q12.2	MAPRE2, ZNF397	rs10502642-A	0.19	1E-6	(Right facial angle of en-ps-go)	0.718	[NR] unit decrease	Affymetrix [311944]	N
835	chr18	32778948	32778949	rs4799372	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	MAPRE2	rs4799372-?	NR	3E-6	(SM 24:1)	0.16590925	[0.096-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
835	chr18	32792257	32792258	rs11660655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.2	Intergenic	rs11660655-T	0.6459	8E-13		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
835	chr18	32796303	32796304	rs56371096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.2		rs56371096-?	NR	6E-8				NR [~ 8900000] (imputed)	N
835	chr18	32809692	32809693	rs4799790	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	18q12.2	NR	rs4799790-?	NR	2E-6		0.097022	[0.057-0.137] unit decrease	NR [13958389] (imputed)	N
835	chr18	32870014	32870015	rs2278464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.2	Intergenic	rs2278464-A	0.6384	4E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
835	chr18	32884204	32884205	rs62096518	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.2	Intergenic	rs62096518-T	0.638	8E-11	(MTAG)	0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
836	chr18	32950055	32950056	rs8096611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q12.2		rs8096611-G	NR	5E-8		0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
836	chr18	32956930	32956931	rs116303449	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q12.2	ZNF396	rs116303449-?	NR	6E-7				Affymetrix [5486770] (imputed)	N
836	chr18	32959396	32959397	rs2978362	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.2	NR	rs2978362-T	0.521569749926524	2E-8		0.0070359204	[0.0046-0.0095] unit decrease	NR [NR]	N
836	chr18	32963795	32963796	rs11876796	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.2	NR	rs11876796-T	0.519251182640992	6E-9		0.005345968	[0.0035-0.0071] unit decrease	NR [NR]	N
836	chr18	32963795	32963796	rs11876796	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.2	NR	rs11876796-T	0.519251182640992	8E-9		0.0066140327	[0.0044-0.0089] unit decrease	NR [NR]	N
836	chr18	32963795	32963796	rs11876796	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.2	NR	rs11876796-T	0.519251182640992	4E-9		0.008626059	[0.0057-0.0115] unit decrease	NR [NR]	N
836	chr18	32963795	32963796	rs11876796	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.2	NR	rs11876796-T	0.519251182640992	4E-9		0.0055269194	[0.0037-0.0074] unit decrease	NR [NR]	N
836	chr18	32976809	32976810	rs12966569	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs12966569-A	0.6475	2E-9	(MTAG)	0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
836	chr18	32986599	32986600	rs1362858	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	18q12.2	ZNF396, INO80C	rs1362858-?	NR	1E-6		2.68	[1.92-3.73]	Illumina [862198]	N
836	chr18	33024106	33024107	rs34849253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.2		rs34849253-?	NR	2E-22				NR [~ 8900000] (imputed)	N
836	chr18	33024745	33024746	rs117682361	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	18q12.2	NR	rs117682361-T	0.02	5E-6	(EA)	1.62	[1.32-2.00]	Affymetrix [7469170] (imputed)	N
837	chr18	33039105	33039106	rs9957318	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q12.2	AC007998.2	rs9957318-A	0.652	1E-20		0.0187	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
837	chr18	33097188	33097189	rs17647041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q12.2		rs17647041-A	NR	3E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
837	chr18	33097959	33097960	rs9953852	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	18q12.2	intergenic	rs9953852-?	NR	3E-6				NR [~ 2000000]	N
837	chr18	33112000	33112001	rs62100531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q12.2	NR	rs62100531-C	0.144207	2E-10		0.01694	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
837	chr18	33138016	33138017	rs534845465	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	18q12.2	GALNT1	rs534845465-A	0.0015	2E-8		5.78	[3.12-10.69]	Illumina [11310926] (imputed)	N
837	chr18	33152620	33152621	rs8095921	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q12.2	MIR3975	rs8095921-G	0.780095	1E-13		0.0165424	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
837	chr18	33152620	33152621	rs8095921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.2		rs8095921-?	NR	5E-12				NR [~ 8900000] (imputed)	N
837	chr18	33152791	33152792	rs7241221	31170332	Zheng J	2019-08-02	J Bone Miner Res	Mendelian Randomization Analysis Reveals a Causal Influence of Circulating Sclerostin Levels on Bone Mineral Density and Fractures.	Serum sclerostin levels	10,584 European ancestry individuals	NA	18q12.2	GALNT1	rs7241221-G	0.772	4E-11		0.109	[0.076-0.142] NR increase	NR [5245208] (imputed)	N
838	chr18	33169133	33169134	rs72958837	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q12.2	NR	rs72958837-?		3E-6				Illumina [4322238] (imputed)	N
838	chr18	33199915	33199916	rs12959333	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.2	GALNT1	rs12959333-T	0.87	5E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
838	chr18	33265229	33265230	rs143609523	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	18q12.2	Intergenic	rs143609523-G	0.012	1E-6		1.3513513	[NR]	Illumina [9112387] (imputed)	N
838	chr18	33284518	33284519	rs7230728	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q12.2	GALNT1	rs7230728-?		8E-6				Illumina [4322238] (imputed)	N
839	chr18	33334754	33334755	rs117986625	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs117986625-A	0.01394	3E-8	(PYCARD)	0.01844	NR unit increase	Illumina [1671387] (imputed)	N
839	chr18	33334754	33334755	rs117986625	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs117986625-A	0.01394	2E-8	(MAP4)	0.02064	NR unit increase	Illumina [1671387] (imputed)	N
839	chr18	33334754	33334755	rs117986625	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs117986625-A	0.01394	1E-8	(TPM4)	0.124	NR unit increase	Illumina [1671387] (imputed)	N
839	chr18	33372611	33372612	rs552316137	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	18q12.2		rs552316137-C	0.01629	9E-6		2.376	[1.621-3.484]	Affymetrix [7975321] (imputed)	N
840	chr18	33534368	33534369	rs190557485	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.2	NR	rs190557485-G		9E-10		0.565	[0.39-0.74] SD units decrease	NR [10700000] (imputed)	N
840	chr18	33545629	33545630	rs1789513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q12.2		rs1789513-G	NR	4E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
840	chr18	33552597	33552598	rs2298716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.2	NR	rs2298716-T	0.231835	6E-13				Affymetrix, Illumina [24246363] (imputed)	N
840	chr18	33552597	33552598	rs2298716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q12.2	NR	rs2298716-T	0.21753	4E-13		0.015863	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
841	chr18	33557465	33557466	rs2276314	27506219	Wang W	2016-08-09	Reprod Sci	Pooling-Based Genome-Wide Association Study Identifies Risk Loci in the Pathogenesis of Ovarian Endometrioma in Chinese Han Women.	Endometriosis	50 Chinese Han ancestry cases, 50 Chinese Han ancestry uterine myoma or hydrosalpinx controls	1,466 Chinese Han ancestry cases, 1,410 Chinese Han ancestry uterine myoma or hydrosalpinx controls	18q12.2	C18orf21	rs2276314-?	NR	7E-6		1.3140606	[1.17-1.48]	Affymetrix [906600]	N
841	chr18	33557465	33557466	rs2276314	24223155	Behr ER	2013-11-06	PLoS One	Genome wide analysis of drug-induced torsades de pointes: lack of common variants with large effect sizes.	Drug-induced torsades de pointes	216 European ancestry cases, 386 European ancestry drug-exposed controls, 385 European ancestry population controls	NA	18q12.2	C18orf21, RPRD1A, MIR187, GALNT1	rs2276314-?	0.19	4E-7	(all controls combined)	2.0	[1.5-2.6]	Illumina [3542142] (imputed)	N
841	chr18	33578332	33578332	rs111619578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q12.2	RPRD1A	rs111619578-AT	0.217436	1E-11		0.018217407	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
841	chr18	33578400	33578401	rs28431958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q12.2		rs28431958-G	NR	7E-12		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
841	chr18	33583315	33583316	rs17562912	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	18q12.2	NR	rs17562912-?		6E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
841	chr18	33602212	33602213	rs28791905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.2	NR	rs28791905-A	0.229381	8E-14				Affymetrix, Illumina [20825802] (imputed)	N
841	chr18	33602212	33602213	rs28791905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q12.2	NR	rs28791905-A	0.213314	3E-13		0.017157	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
841	chr18	33602212	33602213	rs28791905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q12.2		rs28791905-?	NR	1E-11				NR [~ 8900000] (imputed)	N
841	chr18	33619822	33619822	rs74277390	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q12.2	RPRD1A	rs74277390-CAT	0.202539	1E-11		0.0175827	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr18	33694119	33694120	rs1050631	23644492	Wu C	2013-05-05	Nat Genet	Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma.	Esophageal squamous cell cancer (length of survival)	1,331 Chinese ancestry cases	1,062 Chinese ancestry individuals	18q12.2	SLC39A6	rs1050631-T	0.18	4E-8		1.3	[1.19-1.43]	Affymetrix [665999]	N
842	chr18	33722715	33722716	rs3737471	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	18q12.2	ELP2	rs3737471-T	0.932628	9E-11	(7-methylguanine)	0.292	[0.2-0.38] unit decrease	Illumina [13039987] (imputed)	N
842	chr18	33722715	33722716	rs3737471	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	18q12.2	ELP2	rs3737471-T	0.932628	9E-11	(7-methylguanine)	0.292	[0.2-0.38] unit decrease	Illumina [13039987] (imputed)	N
842	chr18	33762556	33762557	rs146958176	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q12.2	NR	rs146958176-C		4E-9		0.6042	[0.41-0.8] SD units decrease	NR [10700000] (imputed)	N
842	chr18	33767478	33767479	rs11665282	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	18q12.2	NR	rs11665282-G	NR	5E-6				NR [NR] (imputed)	N
842	chr18	33767478	33767479	rs11665282	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	18q12.2	MOCOS	rs11665282-G	NR	8E-6			[NR]	NR [NR] (imputed)	N
842	chr18	33767478	33767479	rs11665282	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	18q12.2	MOCOS	rs11665282-A	0.6937	4E-7		0.1491	[0.092-0.207] unit decrease	NR [NR] (imputed)	N
842	chr18	33767478	33767479	rs11665282	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	18q12.2	MOCOS	rs11665282-A	0.6888	1E-7		0.1562	[0.098-0.214] unit decrease	NR [NR] (imputed)	N
843	chr18	33835335	33835336	rs190343823	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.2	MOCOS	rs190343823-C	0.999	2E-7	(AA)	0.549	unit increase	Illumina [NR] (imputed)	N
843	chr18	33835335	33835336	rs190343823	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.2	MOCOS	rs190343823-C	0.999	3E-6	(AA)	2.482	NR unit increase	Illumina [NR] (imputed)	N
843	chr18	33916231	33916232	rs4627442	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.2	NR	rs4627442-?	NR	1E-44				Affymetrix [NR]	N
843	chr18	33919604	33919605	rs2847516	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	18q12.2	NR	rs2847516-T		7E-6		0.1265	[0.071-0.182] unit decrease	Illumina [12770451] (imputed)	N
844	chr18	33999412	33999413	rs1790634	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18q12.2	FHOD3	rs1790634-A	0.448	3E-7	(Glucocorticoids [H02AB])	1.74		Illumina [16500000] (imputed)	N
844	chr18	34031433	34031434	rs1398956	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Alistipes abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.2		rs1398956-A	0.0157983	3E-8		0.32067	[0.21-0.43] unit decrease	Illumina [7980478] (imputed)	N
845	chr18	34094938	34094939	rs12971049	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q12.2	FHOD3	rs12971049-?	NR	5E-7		0.014385557	[0.0088-0.02] unit decrease	Illumina [27896057] (imputed)	N
845	chr18	34107451	34107452	rs17651157	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	18q12.2	FHOD3	rs17651157-?	0.068	1E-7	(perphenazine-triglycerides)			Affymetrix [492900]	N
846	chr18	34224458	34224459	rs7231406	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	18q12.2	FHOD3	rs7231406-?	NR	6E-6		2.3		Illumina [6778521] (imputed)	N
846	chr18	34232609	34232610	rs2848901	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.2	FHOD3	rs2848901-C	0.712765	6E-22	(-16 ms)	0.0588794	[0.047-0.071] unit increase	Affymetrix [10000000] (imputed)	N
846	chr18	34232609	34232610	rs2848901	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.2	FHOD3	rs2848901-C	0.712765	5E-23	(-18 ms)	0.0598968	[0.048-0.072] unit increase	Affymetrix [10000000] (imputed)	N
846	chr18	34232609	34232610	rs2848901	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.2	FHOD3	rs2848901-C	0.712765	4E-13	(-12 ms)	0.0445762	[0.032-0.057] unit increase	Affymetrix [10000000] (imputed)	N
846	chr18	34232609	34232610	rs2848901	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.2	FHOD3	rs2848901-C	0.712765	3E-9	(-10 ms)	0.0364597	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
846	chr18	34232609	34232610	rs2848901	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.2	FHOD3	rs2848901-C	0.712765	1E-17	(-14 ms)	0.0525429	[0.04-0.065] unit increase	Affymetrix [10000000] (imputed)	N
846	chr18	34244841	34244842	rs617207	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	18q12.2	FHOD3	rs617207-A	0.29061	3E-25		0.429603	[0.35-0.51] unit increase	Affymetrix [8590397] (imputed)	N
846	chr18	34252748	34252749	rs8094794	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	18q12.2	FHOD3, KIAA1328, TPGS2	rs8094794-?	0.79	6E-6	(PD1)	2.17	[NR]	Illumina [~ 1400000] (imputed)	N
846	chr18	34253744	34253745	rs503274	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	18q12.2	FHOD3	rs503274-C	0.3105	2E-21		1.5210487	1.40-1.66	Illumina [6530233] (imputed)	N
846	chr18	34253744	34253745	rs503274	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	18q12.2	FHOD3	rs503274-C	0.3105	3E-38		1.4156955	1.34-1.49	Illumina [6530233] (imputed)	N
846	chr18	34257590	34257591	rs79757024	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (acne)	1,115 Japanese ancestry female cases, 4,619 Japanese ancestry female controls	1,204 Japanese ancestry female cases, 4,410 Japanese ancestry female controls	18q12.2	NR	rs79757024-T	0.096090822	7E-6		0.24425165	[0.14-0.35] unit increase	Affymetrix [536506]	N
846	chr18	34261472	34261473	rs151313792	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	18q12.2		rs151313792-A	0.0044	1E-8		0.26	[0.16-0.36] unit increase	Illumina [26711992] (imputed)	N
846	chr18	34280130	34280131	rs505601	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.2	NR	rs505601-?		5E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
846	chr18	34280731	34280732	rs118060942	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	18q12.2	FHOD3	rs118060942-C	0.987769	4E-15		1.03595	[0.78-1.29] unit decrease	Affymetrix [8590397] (imputed)	N
846	chr18	34280731	34280732	rs118060942	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	18q12.2	FHOD3	rs118060942-C	0.988	3E-12		0.799	[0.57-1.02] unit decrease	Affymetrix [8590397] (imputed)	N
846	chr18	34280890	34280891	rs4799426	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	18q12.2	FHOD3	rs4799426-A	0.655	4E-23		0.321	[0.26-0.38] unit decrease	Affymetrix [8590397] (imputed)	N
846	chr18	34289284	34289285	rs61735998	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q12.2		rs61735998-T	0.02	2E-10		6.33	z score increase	Affymetrix [9061022] (imputed)	N
846	chr18	34289284	34289285	rs61735998	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q12.2	FHOD3	rs61735998-G	0.97522	5E-12		0.0406549	[0.029-0.052] unit decrease	NR [13737936] (imputed)	N
846	chr18	34289284	34289285	rs61735998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.2		rs61735998-?	NR	2E-8				NR [~ 8900000] (imputed)	N
846	chr18	34289284	34289285	rs61735998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.2		rs61735998-?	NR	3E-11				NR [~ 8900000] (imputed)	N
846	chr18	34289284	34289285	rs61735998	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.2	FHOD3	rs61735998-T	0.0241	2E-8		0.502	[0.33-0.68] mmHg increase	Affymetrix [NR] (imputed)	N
846	chr18	34289284	34289285	rs61735998	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q12.2		rs61735998-?	NR	4E-11		0.0441542	[0.031-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
846	chr18	34289284	34289285	rs61735998	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	18q12.2	FHOD3	rs61735998-G	0.974824	2E-6		0.97629	[0.57-1.38] unit increase	Affymetrix [~ 7800000] (imputed)	N
846	chr18	34289284	34289285	rs61735998	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q12.2	FHOD3	rs61735998-G		2E-8		0.519	unit decrease	Affymetrix [at least 2696785] (imputed)	N
846	chr18	34289284	34289285	rs61735998	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	18q12.2	FHOD3	rs61735998-T	0.02	2E-14		0.8338	[0.62-1.05] unit decrease	Affymetrix [19941912] (imputed)	N
846	chr18	34311658	34311659	rs879568	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	18q12.2	FHOD3	rs879568-?	NR	8E-9	(EA)	0.33	[0.21-0.45] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
846	chr18	34324090	34324091	rs2303510	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	18q12.2	FHOD3	rs2303510-G	0.6786	4E-9		1.0774354	1.05-1.10	Affymetrix, Illumina [up to 7736182] (imputed)	N
846	chr18	34324090	34324091	rs2303510	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy	5,521 cases, 397,323 controls	NA	18q12.2	FHOD3	rs2303510-G	0.6786	5E-6			[NR]	Affymetrix, Illumina [up to 7736182] (imputed)	N
847	chr18	34371860	34371861	rs7226408	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.2	FHOD3, TPGS2	rs7226408-A	0.181	5E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
847	chr18	34430378	34430379	rs58797046	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q12.2	KIAA1328	rs58797046-A	0.998	3E-6		0.9627	[0.56-1.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
847	chr18	34430378	34430379	rs58797046	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q12.2	KIAA1328	rs58797046-A	0.998	1E-6		1.0105	[0.6-1.42] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr18	34494646	34494647	rs7234039	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.2	NR	rs7234039-?	NR	5E-8		0.0095566	[0.0061-0.013] unit increase	Affymetrix [805426] (imputed)	N
849	chr18	34624602	34624603	rs147813292	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	18q12.2	KIAA1328	rs147813292-G	0.036	5E-7		0.32	[0.44-0.19] unit decrease	Affymetrix [7435577] (imputed)	N
849	chr18	34668146	34668147	rs323299	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	18q12.2		rs323299-?	NR	2E-8				NR [7857346] (imputed)	N
849	chr18	34668146	34668147	rs323299	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.2	KIAA1328	rs323299-?	NR	1E-8		0.0099819	[0.0065-0.0134] unit decrease	Affymetrix [805426] (imputed)	N
849	chr18	34690743	34690744	rs10164099	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q12.2	NA	rs10164099-T	0.8742	1E-9		0.0149	[0.01-0.0198] unit decrease	NR [~ 27400000] (imputed)	N
849	chr18	34721687	34721688	rs2861137	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	18q12.2	KIAA1328	rs2861137-?	NR	5E-6			[0.001-1092]	Illumina [654642] (imputed)	N
850	chr18	34750686	34750687	rs2586786	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q12.2	KIAA1328	rs2586786-T	0.324	6E-12		0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
850	chr18	34779048	34779049	rs141444890	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	18q12.2	NR	rs141444890-?	NR	2E-6		1.05374	[0.62-1.49] unit increase	NR [13958389] (imputed)	N
850	chr18	34790415	34790416	rs12457651	34659352	Bensenor I	2021-09-29	Front Genet	Genome-Wide Association of Proprotein Convertase Subtilisin/Kexin Type 9 Plasma Levels in the ELSA-Brasil Study.	Plasma PCSK9 levels	96 Black ancestry individuals, 178 individuals, 480 White ancestry individuals, 39 Asian ancestry individuals, 17 indigenous ancestry individuals	NA	18q12.2		rs12457651-?	NR	5E-7				Affymetrix [11524071] (imputed)	N
850	chr18	34805193	34805194	rs2017027	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	18q12.2	NR	rs2017027-?	NR	2E-6				Illumina [8270200] (imputed)	N
850	chr18	34808473	34808474	rs1662904	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.2		rs1662904-A	0.7	1E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
850	chr18	34823001	34823002	rs1786070	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.2	NR	rs1786070-C	0.315	5E-9		0.00683351	[0.0045-0.0091] unit increase	NR [9732723] (imputed)	N
850	chr18	34837047	34837048	rs1786064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.2	NR	rs1786064-?	NR	8E-8		0.0094633	[0.006-0.0129] unit decrease	Affymetrix [805426] (imputed)	N
850	chr18	34844919	34844920	rs555403065	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	18q12.2	CELF4	rs555403065-T	0.0021	7E-6		0.6333	[0.36-0.91] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
850	chr18	34858052	34858053	rs78569750	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	18q12.2	NR	rs78569750-T	0.06	1E-6		4.88	[NR] z score decrease	Illumina [9009554] (imputed)	N
851	chr18	34928638	34928639	rs4799915	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	18q12.2	BRUNOL4	rs4799915-T	NR	3E-6				Affymetrix [339272]	N
851	chr18	34988109	34988110	rs1941944	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	18q12.2	NR	rs1941944-T		9E-6		0.4644	[0.26-0.67] unit decrease	Illumina [NR] (imputed)	N
852	chr18	35015147	35015148	rs188403275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.2	CELF4	rs188403275-A	0.006	4E-8		0.091	unit increase	Illumina [NR] (imputed)	N
852	chr18	35015147	35015148	rs188403275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.2	CELF4	rs188403275-A	0.006	4E-7		0.407	NR unit increase	Illumina [NR] (imputed)	N
852	chr18	35028900	35028901	rs4799450	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	18q12.2	NR	rs4799450-?		1E-8	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
852	chr18	35028900	35028901	rs4799450	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	18q12.2	NR	rs4799450-?		1E-12	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
852	chr18	35029505	35029506	rs9966170	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	18q12.2	NR	rs9966170-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
852	chr18	35036829	35036830	rs79828856	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q12.2	NR	rs79828856-?	NR	8E-8	(Japanese)	0.6584	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
852	chr18	35063395	35063396	rs116925431	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs116925431-A	0.05575	4E-11	(NME8)	0.0335	NR unit increase	Illumina [1671387] (imputed)	N
852	chr18	35078681	35078682	rs17750321	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	18q12.2	BRUNOL4	rs17750321-A	0.03	5E-6	(Age 8)	0.3	[0.18-0.42] unit increase	Illumina [2293137] (imputed)	N
852	chr18	35085732	35085733	rs41475954	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q12.2	NR	rs41475954-?	NR	4E-9	(Japanese)	0.6178	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
852	chr18	35085732	35085733	rs41475954	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18q12.2	NR	rs41475954-?	NR	1E-6	(Japanese)	0.4614	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
852	chr18	35101643	35101644	rs1815823	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs1815823-A	NR	6E-11		6.542	z score decrease	Affymetrix [10847151] (imputed)	N
852	chr18	35104385	35104386	rs4426420	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs4426420-T	0.16	3E-13		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
852	chr18	35104827	35104828	rs4799936	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	CELF4	rs4799936-A	0.2871	1E-9		0.013260417	[0.009-0.0175] unit increase	Affymetrix [up to 18485882] (imputed)	N
852	chr18	35104827	35104828	rs4799936	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	18q12.2	CELF4	rs4799936-A	NR	2E-8		0.011652	[0.0076-0.0157] unit increase	Affymetrix [18485882] (imputed)	N
852	chr18	35104827	35104828	rs4799936	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs4799936-A	NR	1E-11		6.795	z score decrease	Affymetrix [10847151] (imputed)	N
852	chr18	35104827	35104828	rs4799936	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q12.2	NR	rs4799936-A	NR	2E-8		5.638	z score decrease	Affymetrix [10847151] (imputed)	N
852	chr18	35104827	35104828	rs4799936	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	18q12.2	NR	rs4799936-G	0.2952	4E-10		0.015	[0.01-0.02] unit increase	Illumina [NR] (imputed)	N
852	chr18	35104827	35104828	rs4799936	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	18q12.2	NR	rs4799936-G	0.2952	4E-8		0.0149	[0.0096-0.0202] unit increase	Illumina [NR] (imputed)	N
852	chr18	35120131	35120132	rs1539844	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs1539844-A	NR	2E-10		0.02063	[0.014-0.027] unit increase	Affymetrix [10847151] (imputed)	N
852	chr18	35120131	35120132	rs1539844	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs1539844-A	NR	2E-15		7.953	z score increase	Affymetrix [10847151] (imputed)	N
852	chr18	35120376	35120377	rs4799454	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs4799454-A	NR	3E-8		5.522	z score decrease	Affymetrix [10847151] (imputed)	N
853	chr18	35127426	35127427	rs1557341	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs1557341-?	NR	1E-10				NR [NR]	N
853	chr18	35127426	35127427	rs1557341	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs1557341-?	NR	1E-8				NR [NR]	N
853	chr18	35127426	35127427	rs1557341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.2	NR	rs1557341-C	0.660559906950795	4E-17		0.015578971	[0.012-0.019] unit decrease	NR [NR]	N
853	chr18	35127426	35127427	rs1557341	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.2	NR	rs1557341-C	0.6545	4E-16		0.046273	[0.035-0.057] unit decrease	Illumina [18485882] (imputed)	N
853	chr18	35127426	35127427	rs1557341	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q12.2	CELF4	rs1557341-A	0.343	6E-9		0.021337654	[0.014-0.029] unit increase	Affymetrix [up to 6544775] (imputed)	N
853	chr18	35129075	35129076	rs1557339	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	18q12.2	CELF4	rs1557339-A	0.261933	4E-10		6.27	z score decrease	NR [10847151] (imputed)	N
853	chr18	35138109	35138110	rs11877758	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q12.2	NR	rs11877758-G	0.3114	1E-7		0.0067	[0.0042-0.0092] unit increase	NR [7666894] (imputed)	N
853	chr18	35138244	35138245	rs12967855	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	18q12.2	CELF4	rs12967855-A	0.33	1E-12		0.037	unit increase	NR [2324712] (imputed)	N
853	chr18	35138244	35138245	rs12967855	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q12.2		rs12967855-?	NR	3E-17		0.0267	unit increase	NR [NR]	N
853	chr18	35138244	35138245	rs12967855	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	18q12.2	NR	rs12967855-A	0.329	2E-9		1.034	[1.02-1.05]	NR [5276842] (imputed)	N
853	chr18	35138244	35138245	rs12967855	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	CELF4	rs12967855-G	0.3308	4E-14		0.016108625	[0.012-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
853	chr18	35138244	35138245	rs12967855	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	18q12.2	CELF4	rs12967855-G	NR	2E-9		0.012344	[0.0083-0.0164] unit increase	Affymetrix [18485882] (imputed)	N
853	chr18	35138244	35138245	rs12967855	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	18q12.2		rs12967855-A	0.331	3E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
853	chr18	35138244	35138245	rs12967855	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q12.2	NR	rs12967855-A	0.3295	1E-19		1.021	[1.016-1.026]	NR [8098588] (imputed)	N
853	chr18	35138244	35138245	rs12967855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q12.2		rs12967855-?	NR	7E-27				NR [~ 8900000] (imputed)	N
853	chr18	35138244	35138245	rs12967855	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q12.2	NR	rs12967855-A	NR	2E-12		0.01741	[0.013-0.022] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35145121	35145122	rs11082011	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.2	NR	rs11082011-T	0.661428007923631	7E-19		0.008621137	[0.0067-0.0105] unit decrease	NR [NR]	N
853	chr18	35145121	35145122	rs11082011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs11082011-T	0.6716	2E-38		0.0194	[0.016-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
853	chr18	35145121	35145122	rs11082011	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs11082011-T	0.6716	2E-37	(MTAG)	0.0178	[0.015-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
853	chr18	35145121	35145122	rs11082011	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs11082011-T	NR	3E-23		9.949	z score decrease	Affymetrix [10847151] (imputed)	N
853	chr18	35145121	35145122	rs11082011	29559929	Amare AT	2018-03-06	Front Psychiatry	Association of the Polygenic Scores for Personality Traits and Response to Selective Serotonin Reuptake Inhibitors in Patients with Major Depressive Disorder.	Remission after SSRI treatment in MDD or neuroticism	865 individuals with SSRI response data, 170,911 individuals with personality trait data	NA	18q12.2	BRUNOL4	rs11082011-C	NR	4E-8				NR [NR] (imputed)	N
853	chr18	35145121	35145122	rs11082011	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q12.2	CELF4	rs11082011-T	0.343995	4E-21		9.42	z score decrease	NR [10847151] (imputed)	N
853	chr18	35145121	35145122	rs11082011	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q12.2	CELF4	rs11082011-T	0.343995	9E-12		6.83	z score decrease	NR [10847151] (imputed)	N
853	chr18	35145121	35145122	rs11082011	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	18q12.2	NR	rs11082011-C	0.3342	3E-12		0.0207	[0.015-0.027] unit increase	Illumina [NR] (imputed)	N
853	chr18	35146205	35146206	rs150664883	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q12.2	NR	rs150664883-?	NR	5E-9	(Japanese)	0.4318	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
853	chr18	35146365	35146366	rs80035064	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	CELF4	rs80035064-T	NR	6E-13		0.01248	[0.0091-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
853	chr18	35146365	35146366	rs80035064	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q12.2	NR	rs80035064-?	NR	3E-11		0.01852	[0.013-0.024] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35147620	35147621	rs12969480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	18q12.2	NR	rs12969480-G	0.753	4E-8		0.00975168	[0.0063-0.0132] unit decrease	NR [9732723] (imputed)	N
853	chr18	35152562	35152563	rs11665070	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q12.2	NR	rs11665070-A	0.6684	3E-10		0.027819041	[0.019-0.036] unit decrease	NR [NR]	N
853	chr18	35152562	35152563	rs11665070	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs11665070-?	NR	2E-13				NR [NR]	N
853	chr18	35152562	35152563	rs11665070	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs11665070-?	NR	1E-13				NR [NR]	N
853	chr18	35152562	35152563	rs11665070	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	18q12.2	NR	rs11665070-?		1E-9				NR [520857]	N
853	chr18	35152562	35152563	rs11665070	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	18q12.2	NR	rs11665070-?		2E-9				NR [11140414]	N
853	chr18	35152562	35152563	rs11665070	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	18q12.2	NR	rs11665070-G	0.3313	3E-16		0.01565	[0.012-0.019] unit increase	NR [8968716] (imputed)	N
853	chr18	35152562	35152563	rs11665070	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	18q12.2	NR	rs11665070-G	NR	5E-18		0.02149	NR unit increase	NR [7259579]	N
853	chr18	35152562	35152563	rs11665070	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	CELF4	rs11665070-G	NR	4E-13		0.012874	[0.0094-0.0163] unit decrease	Affymetrix [18485882] (imputed)	N
853	chr18	35152562	35152563	rs11665070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q12.2		rs11665070-?	NR	2E-18				NR [~ 8900000] (imputed)	N
853	chr18	35152562	35152563	rs11665070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q12.2	NR	rs11665070-A	NR	2E-9		6.036	z score decrease	Affymetrix [10847151] (imputed)	N
853	chr18	35152562	35152563	rs11665070	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	18q12.2	NR	rs11665070-A	0.6693	3E-9		0.0116	[0.0077-0.0155] unit increase	Illumina [NR] (imputed)	N
853	chr18	35154195	35154196	rs62081465	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	CELF4	rs62081465-C	0.2299	3E-9		0.014473228	[0.0097-0.0192] unit decrease	Affymetrix [up to 18485882] (imputed)	N
853	chr18	35154479	35154480	rs12959642	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.2	NR	rs12959642-G	0.774042071165866	3E-12		0.010844017	[0.0078-0.0139] unit decrease	NR [NR]	N
853	chr18	35154479	35154480	rs12959642	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.2	NR	rs12959642-G	0.774042071165866	3E-13		0.011649956	[0.0085-0.0148] unit decrease	NR [NR]	N
853	chr18	35155909	35155910	rs4799949	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs4799949-?	NR	5E-13				NR [NR]	N
853	chr18	35155909	35155910	rs4799949	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.2		rs4799949-?	NR	1E-13				NR [NR]	N
853	chr18	35155909	35155910	rs4799949	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	18q12.2	CELF4	rs4799949-?	NR	7E-10		0.00752107	[0.0051-0.0099] unit increase	Affymetrix [NR] (imputed)	N
853	chr18	35155909	35155910	rs4799949	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q12.2	CELF4	rs4799949-T	0.344639	4E-13		7.26	z score decrease	NR [10847151] (imputed)	N
853	chr18	35156195	35156196	rs7243439	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.2	NR	rs7243439-G	0.221853377180568	2E-14		0.009195012	[0.0068-0.0116] unit increase	NR [NR]	N
853	chr18	35159123	35159124	rs9964724	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	18q12.2	NR	rs9964724-?		3E-14		0.0176465	[0.013-0.022] unit increase	Affymetrix [19400418] (imputed)	N
853	chr18	35159123	35159124	rs9964724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs9964724-T	0.6844	8E-36	(conditional-joint)	0.0189	[0.016-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
853	chr18	35159123	35159124	rs9964724	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	18q12.2	NR	rs9964724-T	0.6832	2E-14		0.0182164	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
853	chr18	35159595	35159596	rs1941954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q12.2	Intergenic	rs1941954-A	0.3236	1E-9	(MTAG)	0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
853	chr18	35160142	35160143	rs7504262	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q12.2	CELF4	rs7504262-G	0.341	7E-9		0.013731794	[0.0084-0.0191] unit decrease	NR [9417325] (imputed)	N
853	chr18	35160142	35160143	rs7504262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs7504262-A	0.3312	1E-18	(MTAG)	0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
853	chr18	35162837	35162838	rs1941955	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q12.2	CELF4	rs1941955-?	NR	6E-15		0.016086996	[0.012-0.02] unit decrease	NR [7306098]	N
853	chr18	35167217	35167218	rs72893182	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	18q12.2	NR	rs72893182-G	0.233598	4E-17		0.07013091	[0.054-0.086] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
853	chr18	35170044	35170045	rs4799950	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	18q12.2	Intergenic	rs4799950-?	NR	2E-9		0.0269745	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
853	chr18	35179807	35179808	rs12962050	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q12.2	AC009899.1	rs12962050-A	0.6445	2E-14		0.0153	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
853	chr18	35182707	35182708	rs72893199	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs72893199-C	NR	8E-10		0.01762	[0.012-0.023] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35182707	35182708	rs72893199	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	18q12.2	NR	rs72893199-T	0.221728	7E-11		6.525	unit decrease	NR [10847151] (imputed)	N
853	chr18	35183273	35183274	rs55731231	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	18q12.2	CELF4	rs55731231-C	0.221154	4E-11		6.6	z score decrease	NR [10847151] (imputed)	N
853	chr18	35183273	35183274	rs55731231	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	18q12.2	CELF4	rs55731231-C	0.221154	2E-10		6.34	z score decrease	NR [10847151] (imputed)	N
853	chr18	35185857	35185858	rs4799461	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q12.2	NR	rs4799461-G	0.758967	7E-11		0.0525551	[0.037-0.068] unit increase	Affymetrix [17914406] (imputed)	N
853	chr18	35185857	35185858	rs4799461	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs4799461-A	NR	3E-21		9.45	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35185857	35185858	rs4799461	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.2	intergenic	rs4799461-A	0.24280999999999997	1E-21		9.563	z score increase	Illumina [18485882] (imputed)	N
853	chr18	35186121	35186122	rs12969294	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q12.2		rs12969294-A	0.3787	2E-10		51.185696	z score increase	NR [6814003]	N
853	chr18	35189855	35189856	rs7506595	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	CELF4	rs7506595-G	NR	1E-8		0.0098003	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
853	chr18	35197974	35197975	rs149467650	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs149467650-A	0.01045	4E-9	(RTCB)	0.08342	NR unit increase	Illumina [1671387] (imputed)	N
853	chr18	35198295	35198296	rs10502675	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	MIR4318	rs10502675-T	0.2814	1E-9		0.013618511	[0.0092-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
853	chr18	35198295	35198296	rs10502675	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs10502675-T	NR	2E-15		7.951	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35198295	35198296	rs10502675	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	18q12.2	intergenic	rs10502675-?	NR	3E-6	(SF9)			Affymetrix [5476100] (imputed)	N
853	chr18	35201152	35201153	rs11663050	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs11663050-T	NR	4E-11		0.01653	[0.012-0.021] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35201152	35201153	rs11663050	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	18q12.2	CELF4	rs11663050-T	0.357804	4E-16		8.13	z score increase	NR [10847151] (imputed)	N
853	chr18	35204602	35204603	rs62081500	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.2	NR	rs62081500-G	0.0445286398709915	8E-9		0.020608574	[0.014-0.028] unit increase	NR [NR]	N
853	chr18	35207711	35207712	rs62081501	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	MIR4318	rs62081501-G	NR	6E-10		0.010787	[0.0074-0.0142] unit increase	Affymetrix [18485882] (imputed)	N
853	chr18	35207711	35207712	rs62081501	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs62081501-A	NR	7E-12		0.02984	[0.021-0.038] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35207711	35207712	rs62081501	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs62081501-A	NR	6E-17		8.373	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35207711	35207712	rs62081501	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q12.2	NR	rs62081501-?	NR	2E-8		0.02377	[0.015-0.032] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35207711	35207712	rs62081501	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	18q12.2	NR	rs62081501-A	0.0813367	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
853	chr18	35208319	35208320	rs1427041	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	MIR4318	rs1427041-G	0.1672	1E-10		0.017061839	[0.012-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
853	chr18	35208319	35208320	rs1427041	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	MIR4318	rs1427041-A	NR	1E-8		0.010166	[0.0067-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
853	chr18	35208319	35208320	rs1427041	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs1427041-A	NR	3E-10		0.02004	[0.014-0.026] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35208319	35208320	rs1427041	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs1427041-A	NR	6E-15		7.806	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35208319	35208320	rs1427041	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	18q12.2	NR	rs1427041-A	0.176274	5E-9		5.85	z score increase	NR [10847151] (imputed)	N
853	chr18	35214005	35214006	rs2162440	19359265	Mangino M	2009-04-08	J Med Genet	A genome-wide association study identifies a novel locus on chromosome 18q12.2 influencing white cell telomere length.	Telomere length	1,625 European ancestry females	1,165 European ancestry individuals	18q12.2	BRUNOL4, PIKC3C	rs2162440-G	NR	3E-6		106.0	[62.88-149.12] base pairs decrease	Illumina [~ 314075]	N
853	chr18	35215516	35215517	rs12957516	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	MIR4318	rs12957516-T	0.2727	1E-8		0.012599678	[0.0082-0.017] unit increase	Affymetrix [up to 18485882] (imputed)	N
853	chr18	35215516	35215517	rs12957516	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs12957516-C	NR	3E-9		0.01584	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35215516	35215517	rs12957516	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	18q12.2	NR	rs12957516-T	0.7195	2E-8		1.037373	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
853	chr18	35217543	35217544	rs1544905	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs1544905-A	NR	6E-19		8.891	z score decrease	Affymetrix [10847151] (imputed)	N
853	chr18	35221629	35221630	rs2217127	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	18q12.2	NR	rs2217127-T	0.290552	4E-8		5.49	z score increase	NR [~ 10847151] (imputed)	N
853	chr18	35242635	35242636	rs17570807	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.2	NR	rs17570807-G	0.0435734439280094	2E-8		0.012701113	[0.0083-0.0171] unit increase	NR [NR]	N
853	chr18	35242635	35242636	rs17570807	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs17570807-A	NR	2E-11		6.707	z score decrease	Affymetrix [10847151] (imputed)	N
853	chr18	35242635	35242636	rs17570807	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q12.2	NR	rs17570807-?	NR	2E-8		0.03203	[0.021-0.043] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35246321	35246322	rs1427027	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	ENSG00000243516	rs1427027-C	NR	7E-11		0.0114	[0.008-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
853	chr18	35246321	35246322	rs1427027	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q12.2	NR	rs1427027-T	NR	2E-8		5.627	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35246321	35246322	rs1427027	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q12.2	NR	rs1427027-?	NR	1E-8		0.015	[0.0099-0.0201] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35246321	35246322	rs1427027	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q12.2	NR	rs1427027-T	0.268979	3E-8		5.56	z score increase	NR [10847151] (imputed)	N
853	chr18	35247420	35247421	rs875075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.2	Intergenic	rs875075-C	0.2677	4E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
853	chr18	35247851	35247852	rs7242036	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.2	NR	rs7242036-G	0.722662913372965	3E-15		0.008676781	[0.0065-0.0108] unit decrease	NR [NR]	N
853	chr18	35248086	35248087	rs62081537	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q12.2	NR	rs62081537-C	NR	1E-9		0.02162	[0.015-0.029] unit increase	Affymetrix [10847151] (imputed)	N
853	chr18	35250413	35250414	rs11661202	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q12.2	NR	rs11661202-C	0.268918	1E-16		8.29	z score decrease	NR [10847151] (imputed)	N
853	chr18	35250857	35250858	rs17671611	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs17671611-T	NR	3E-17		8.461	z score increase	Affymetrix [10847151] (imputed)	N
853	chr18	35253146	35253147	rs1427028	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	18q12.2	NR	rs1427028-G	0.732905	4E-9		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
854	chr18	35262528	35262529	rs62083469	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	18q12.2		rs62083469-?	NR	7E-6		1.0484003	[1.02703748116011-1.07020745232483]	Illumina [up to 7827597] (imputed)	N
854	chr18	35266136	35266137	rs9946342	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q12.2	NR	rs9946342-A	0.295239	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
854	chr18	35272538	35272539	rs56171318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs56171318-T	0.1431	7E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
854	chr18	35272538	35272539	rs56171318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs56171318-T	0.1431	3E-13	(MTAG)	0.0136	[0.0099-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
854	chr18	35275772	35275773	rs17571122	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs17571122-A	NR	7E-11		6.529	z score decrease	Affymetrix [10847151] (imputed)	N
854	chr18	35278125	35278126	rs4799464	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q12.2	NR	rs4799464-T	0.694097018234733	1E-10		0.009725974	[0.0068-0.0127] unit decrease	NR [NR]	N
854	chr18	35288226	35288227	rs1187257	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q12.2	NR	rs1187257-G	0.285107923919914	4E-10		0.006349732	[0.0044-0.0083] unit increase	NR [NR]	N
854	chr18	35288226	35288227	rs1187257	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.2	NR	rs1187257-A	NR	2E-9		6.036	z score decrease	Affymetrix [10847151] (imputed)	N
854	chr18	35289646	35289647	rs1187264	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.2	NR	rs1187264-C	0.1377	1E-6		0.027163	[0.016-0.038] unit increase	Illumina [18485882] (imputed)	N
854	chr18	35289646	35289647	rs1187264	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	18q12.2	CELF4	rs1187264-C	0.136	1E-8		0.118	[0.077-0.159] unit increase	Affymetrix [7207648] (imputed)	N
854	chr18	35294553	35294554	rs1365658	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	18q12.2	STAB1, NT5DC2, SMIM4, PBRM1, GNL3, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, RP5-966M1.6	rs1365658-?		8E-9				NR [7428630] (imputed)	N
854	chr18	35294553	35294554	rs1365658	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q12.2	HDAC9	rs1365658-?		2E-14				NR [7428630] (imputed)	N
854	chr18	35294553	35294554	rs1365658	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	18q12.2	NR	rs1365658-?		3E-8				NR [7428630] (imputed)	N
854	chr18	35294553	35294554	rs1365658	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q12.2	NR	rs1365658-?	NR	5E-8	(right cerebellum white matter)			NR [9227495] (imputed)	N
854	chr18	35295329	35295330	rs1187256	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	18q12.2	Intergenic	rs1187256-T		2E-8		0.12	[0.079-0.161] unit increase	Affymetrix [7207648] (imputed)	N
854	chr18	35307819	35307820	rs12458491	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q12.2	NR	rs12458491-?	NR	2E-9	(Japanese)	0.8417	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
854	chr18	35312203	35312204	rs189093293	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	18q12.2	intergenic	rs189093293-A	0.9956	1E-6		0.2781	[0.16-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
854	chr18	35347099	35347100	rs1427039	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q12.2	CELF4	rs1427039-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
854	chr18	35351725	35351726	rs1187220	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	18q12.2	CELF4	rs1187220-T	0.323	3E-7		0.024	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
854	chr18	35351876	35351877	rs1187219	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q12.2	NR	rs1187219-C	0.325955035817574	4E-9		0.0075312494	[0.005-0.01] unit increase	NR [NR]	N
854	chr18	35351876	35351877	rs1187219	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q12.2	NR	rs1187219-C	0.325955035817574	5E-10		0.009948833	[0.0068-0.0131] unit increase	NR [NR]	N
854	chr18	35351876	35351877	rs1187219	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs1187219-T	0.6873	1E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
854	chr18	35356574	35356575	rs1559903	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q12.2	ENSG00000243516	rs1559903-C	NR	3E-9		0.01034	[0.0069-0.0137] unit decrease	Affymetrix [18485882] (imputed)	N
854	chr18	35359522	35359523	rs17616687	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q12.2	NR	rs17616687-T	0.0392704497395065	3E-8		0.013350334	[0.0086-0.0181] unit increase	NR [NR]	N
854	chr18	35361129	35361130	rs72899043	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.2	intergenic	rs72899043-T	0.4221	1E-7		5.303	z score decrease	Illumina [18485882] (imputed)	N
854	chr18	35364097	35364098	rs12961969	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.2	NR	rs12961969-C	0.80839	9E-7		0.027433	[0.016-0.038] unit decrease	Illumina [18485882] (imputed)	N
854	chr18	35364097	35364098	rs12961969	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q12.2	CELF4	rs12961969-A	0.2	2E-8		0.024998885	[0.016-0.034] unit increase	Affymetrix [up to 6544775] (imputed)	N
854	chr18	35378539	35378540	rs1787087	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q12.2	RP11-19F9.1	rs1787087-T	0.1883	2E-8		0.014356594	[0.0093-0.0194] unit increase	Affymetrix [up to 18485882] (imputed)	N
855	chr18	35421420	35421421	rs4799966	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q12.2	NR	rs4799966-?	NR	5E-6		4.556	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
856	chr18	35530386	35530387	rs139082285	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	18q12.2	NR	rs139082285-?	NR	6E-6		0.1433	[0.081-0.206] unit increase	Illumina [at least 560000] (imputed)	N
856	chr18	35536613	35536614	rs112421127	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	18q12.2	NR	rs112421127-A	0.0133351	6E-6		1.063	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
856	chr18	35584239	35584240	rs6507234	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q12.2	NR	rs6507234-?	NR	4E-6		4.607	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
857	chr18	35762460	35762461	rs9950528	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q12.2	CELF4	rs9950528-G	0.34950000000000003	4E-9		1.0237783		Affymetrix [11880941] (imputed)	N
857	chr18	35782638	35782639	rs7230393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	18q12.2		rs7230393-A	NR	7E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
859	chr18	35931011	35931012	rs78141810	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	18q12.2	NR	rs78141810-?	NR	4E-6	(AA)	2.2727273	[NR]	Affymetrix, Illumina [NR] (imputed)	N
859	chr18	35965412	35965413	rs1196939	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	18q12.2	intergenic	rs1196939-T	0.10	4E-6		56.3	[32.39-80.21] unit increase	Illumina [6380737] (imputed)	N
859	chr18	36001572	36001573	rs885034	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	541 Japanese ancestry women	NA	18q12.2	intergenic	rs885034-C	0.15	8E-8		78.2	[49.98-106.42] unit increase	Illumina [545605]	N
859	chr18	36005725	36005726	rs1145580	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q12.2	NR	rs1145580-?		1E-8				NR [7428630] (imputed)	N
859	chr18	36007702	36007703	rs7228555	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	18q12.2	ERC2	rs7228555-?		5E-8				NR [7428630] (imputed)	N
859	chr18	36011778	36011779	rs11082075	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	18q12.2	intergenic	rs11082075-A	0.15	6E-6	(female)	0.0988	[0.056-0.141] unit increase	Illumina [6380737] (imputed)	N
859	chr18	36037620	36037621	rs1944386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.2	Intergenic	rs1944386-T	0.64	2E-12	(MTAG)	0.0131	[0.0094-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
859	chr18	36037620	36037621	rs1944386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.2	Intergenic	rs1944386-T	0.64	1E-11		0.0138	[0.0099-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
859	chr18	36037620	36037621	rs1944386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs1944386-T	0.6401	5E-14	(MTAG)	0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
859	chr18	36037620	36037621	rs1944386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.2	Intergenic	rs1944386-T	0.6401	2E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
860	chr18	36048556	36048557	rs62080688	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	18q12.2		rs62080688-G	0.9	7E-6		1.77	[1.38-2.27]	Illumina [10258281] (imputed)	N
860	chr18	36062184	36062185	rs9959302	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	KIAA1328	rs9959302-?	NR	8E-6	(PC 38:4)	0.1518759	[0.085-0.218] unit increase	Affymetrix [at least 2500000] (imputed)	N
860	chr18	36062184	36062185	rs9959302	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	KIAA1328	rs9959302-?	NR	2E-6	(TAG 52:5)	0.16153406	[0.095-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
860	chr18	36062184	36062185	rs9959302	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	KIAA1328	rs9959302-?	NR	2E-6	(TAG 52:4)	0.16235171	[0.095-0.229] unit increase	Affymetrix [at least 2500000] (imputed)	N
860	chr18	36083733	36083734	rs10502699	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based)	1,558 European ancestry resilient cases, 381 European ancestry controls with post-deployment mental disorder	NA	18q12.2	intergenic	rs10502699-G	0.1603	1E-6		1.6498		Illumina [at least 664457] (imputed)	N
860	chr18	36105006	36105007	rs2861805	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	18q12.2	CELF4	rs2861805-A		3E-28		0.0094	[0.0076-0.0112] unit increase	Affymetrix [13304133] (imputed)	N
860	chr18	36125897	36125898	rs1834650	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.2	NR	rs1834650-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
860	chr18	36125985	36125986	rs1963381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs1963381-A	0.7506	9E-10		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
860	chr18	36125985	36125986	rs1963381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs1963381-A	0.7506	1E-11	(MTAG)	0.0102	[0.0073-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
860	chr18	36129450	36129451	rs12967828	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q12.2	ENSG00000268566	rs12967828-?	NR	1E-9		0.015142529	[0.01-0.02] unit decrease	NR [7306098]	N
860	chr18	36129450	36129451	rs12967828	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	18q12.2	ENSG00000268566	rs12967828-?	NR	9E-12		6.817	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
860	chr18	36129450	36129451	rs12967828	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	18q12.2	ENSG00000268566	rs12967828-?	NR	1E-9		6.087	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
860	chr18	36131428	36131429	rs10853455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q12.2	Intergenic	rs10853455-T	0.2049	8E-9	(MTAG)	0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
860	chr18	36162581	36162582	rs16970664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.2	Intergenic	rs16970664-A	0.1109	6E-9	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
860	chr18	36164083	36164084	rs11874191	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q12.2	NR	rs11874191-?	NR	5E-8	(male)	0.21828	[0.14-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
860	chr18	36164083	36164084	rs11874191	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q12.2	NR	rs11874191-?	NR	3E-8		0.14051	[0.091-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
861	chr18	36183822	36183823	rs7228974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.2		rs7228974-?	NR	4E-10				NR [~ 8900000] (imputed)	N
861	chr18	36196915	36196916	rs4800036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.2	NR	rs4800036-?	NR	2E-6				Affymetrix [NR]	N
861	chr18	36198731	36198732	rs11082098	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	18q12.2	intergenic	rs11082098-A	0.0558	2E-6		1.138	[NR] unit increase	Illumina [1216189] (imputed)	N
861	chr18	36198731	36198732	rs11082098	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	18q12.2	intergenic	rs11082098-A	0.0558	3E-7		1.032	[NR] unit increase	Illumina [1216074] (imputed)	N
861	chr18	36278708	36278709	rs62080313	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q12.2	COMMD9	rs62080313-C	0.1233	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
862	chr18	36328094	36328095	rs75457814	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q12.2	intergenic	rs75457814-A	0.8024	2E-8		0.0119233	[0.0078-0.0161] unit decrease	Affymetrix [11880941] (imputed)	N
862	chr18	36344739	36344740	rs148461253	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs148461253-A	0.0184	2E-9	(MTAG)	0.0375	[0.025-0.05] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
862	chr18	36366204	36366205	rs8085283	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	KIAA1328	rs8085283-?	NR	9E-6	(uric acid)	0.18430494	[0.1-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
862	chr18	36406681	36406682	rs74468293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs74468293-A	0.9409	3E-10	(MTAG)	0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
862	chr18	36423417	36423418	rs12968829	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.2	KIAA1328	rs12968829-?	NR	9E-6	(CE 18:1)	0.23317377	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
863	chr18	36505317	36505318	rs9945284	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	18q12.2	NR	rs9945284-?	NR	2E-6				Illumina [540916] (imputed)	N
863	chr18	36510586	36510587	rs60222682	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	18q12.2	MIR924HG	rs60222682-T	0.2037	4E-8		0.0646	[0.042-0.088] unit decrease	NR [9744772] (imputed)	N
863	chr18	36532975	36532976	rs4327120	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.2	LOC647946	rs4327120-T	0.895	9E-7	(EA, men)	0.04	[0.024-0.056] kg/m2 increase	Affymetrix, Illumina [2550021]	N
863	chr18	36565420	36565421	rs72902523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs72902523-T	0.2594	1E-10		0.0103	[0.0072-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
864	chr18	36621061	36621062	rs57679688	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q12.2	NR	rs57679688-T	0.2633	3E-7		0.0069	[0.0044-0.0094] unit increase	NR [7666894] (imputed)	N
864	chr18	36624312	36624313	rs7242902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs7242902-A	0.278	7E-12	(MTAG)	0.01	[0.0071-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
864	chr18	36648363	36648364	rs139980871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs139980871-T	0.0633	6E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
864	chr18	36680498	36680499	rs12165098	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	18q12.2	BRUNOL4	rs12165098-?	NR	5E-6	(EA)	3.18	[1.81-4.55] unit decrease	Affymetrix, Illumina [2033301]	N
865	chr18	36725892	36725893	rs17662631	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	18q12.2	NR	rs17662631-T	0.95	2E-6	(AA)	7.52	[4.52-10.52] bpm decrease	Illumina [at least 1100000] (imputed)	N
865	chr18	36738195	36738196	rs4570936	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	18q12.2	intergenic	rs4570936-T	0.22	6E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
865	chr18	36746622	36746623	rs7227272	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q12.2	NR	rs7227272-G	0.8229	5E-13		0.0408	[0.03-0.052] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
865	chr18	36764430	36764431	rs71350590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.2	NR	rs71350590-A	0.02962	2E-8	(APOA2)	0.05544	NR unit increase	Illumina [1671387] (imputed)	N
865	chr18	36766379	36766380	rs72888328	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs72888328-T	0.2124	4E-8	(MTAG)	0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
866	chr18	36859092	36859093	rs62079448	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.2	Intergenic	rs62079448-C	0.9898	1E-11		0.0659	[0.047-0.085] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
866	chr18	36859201	36859202	rs17663182	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	18q12.2	NR	rs17663182-?		3E-8				Illumina [up to 6969139] (imputed)	N
866	chr18	36859201	36859202	rs17663182	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	18q12.2	LINC00669	rs17663182-G	0.922724714	5E-9		0.353136	[0.23-0.47] unit increase	Illumina [6952813] (imputed)	N
866	chr18	36859201	36859202	rs17663182	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	18q12.2	LINC00669	rs17663182-G	0.922724714	5E-7		0.29999	[0.18-0.42] unit increase	Illumina [6952813] (imputed)	N
866	chr18	36883736	36883737	rs62099069	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	18q12.2	NR	rs62099069-T	NR	1E-9		1.0309278		NR [NR] (imputed)	N
866	chr18	36883736	36883737	rs62099069	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	18q12.2	MIR924HG	rs62099069-T	0.58	1E-8		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
866	chr18	36885074	36885075	rs2163544	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	18q12.2		rs2163544-?	NR	7E-9				NR [8243736]	N
866	chr18	36885074	36885075	rs2163544	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	18q12.2	Intergenic	rs2163544-C	0.420291	2E-6		0.031	[0.019-0.043] unit decrease	Illumina [1220000] (imputed)	N
866	chr18	36896002	36896003	rs9304204	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q12.2	LINC00669	rs9304204-G	0.81	5E-8		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
866	chr18	36898458	36898459	rs978807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs978807-A	0.1885	9E-15		0.0139	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
866	chr18	36915042	36915043	rs12962980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.2	Intergenic	rs12962980-C	0.1793	6E-16	(MTAG)	0.0189	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
866	chr18	36915042	36915043	rs12962980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.2	Intergenic	rs12962980-C	0.1797	4E-24	(MTAG)	0.0217	[0.018-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
866	chr18	36915042	36915043	rs12962980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.2	Intergenic	rs12962980-G	0.8203	1E-16		0.0244	[0.019-0.03] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
866	chr18	36915042	36915043	rs12962980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.2	Intergenic	rs12962980-C	0.186	2E-20	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
866	chr18	36915042	36915043	rs12962980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q12.2	Intergenic	rs12962980-C	0.1925	2E-11	(MTAG)	0.0195	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
866	chr18	36921850	36921851	rs8096225	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.2		rs8096225-A	0.303	6E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
866	chr18	36921850	36921851	rs8096225	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.2	NR	rs8096225-C	0.703	2E-11		0.00791193	[0.0056-0.0102] unit increase	NR [9732723] (imputed)	N
866	chr18	36921850	36921851	rs8096225	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.2	NR	rs8096225-C	0.703	3E-8		0.015524534	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
866	chr18	36935539	36935540	rs12957214	26644207	Clarelli F	2015-12-08	Pharmacogenomics J	Pharmacogenetic study of long-term response to interferon-? treatment in multiple sclerosis.	Response to interferon beta in multiple sclerosis	166 European ancestry responder cases, 171 European ancestry non-responder cases	NA	18q12.2	LINC00669	rs12957214-C	0.1305	6E-6		4.1219	[NR]	Illumina [1387466] (imputed)	N
866	chr18	36942456	36942457	rs2276209	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.2		rs2276209-A	0.704	3E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
866	chr18	36959683	36959684	rs2849767	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q12.2	MIR924HG	rs2849767-A	0.325179	5E-12		0.0154742	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
867	chr18	37069311	37069312	rs1791244	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Schizophrenia (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	18q12.2	MIR924HG	rs1791244-?	NR	7E-6	(MTAG including spine BMD data)	0.083	unit decrease	Affymetrix [NR]	N
868	chr18	37153342	37153343	rs150177813	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q12.3	MIR924HG	rs150177813-C	0.0	2E-7	(African)			Illumina [4404269] (imputed)	N
868	chr18	37165304	37165305	rs7226835	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.3	RPL7AP66	rs7226835-A	0.041	8E-6	(Snack intake )	0.04	[NR] kcal increase	Illumina [899892]	N
868	chr18	37182906	37182907	rs2852349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs2852349-T	0.5278	4E-11		0.0093	[0.0066-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
868	chr18	37199057	37199058	rs188699384	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		18q12.3	Intergenic	rs188699384-A	0.003	5E-6	(liability model)	0.79	[0.46-1.12] unit increase	NR [19725427] (imputed)	N
869	chr18	37254233	37254234	rs36019844	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	18q12.3		rs36019844-?	NR	2E-9				Affymetrix [810906]	N
869	chr18	37289058	37289059	rs62098997	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.3	Intergenic	rs62098997-G	0.9875	4E-8		0.0561	[0.036-0.076] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
869	chr18	37315685	37315686	rs1398899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs1398899-T	0.2464	7E-13	(MTAG)	0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
869	chr18	37338410	37338410	rs67975660	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	18q12.3	NR	rs67975660-T	0.700724	1E-9		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
870	chr18	37407689	37407690	rs9964831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.3	Intergenic	rs9964831-T	0.7468	5E-11	(MTAG)	0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
870	chr18	37407689	37407690	rs9964831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.3	Intergenic	rs9964831-C	0.2532	3E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
870	chr18	37407689	37407690	rs9964831	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.3	Intergenic	rs9964831-C	0.2529	5E-13		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
870	chr18	37412227	37412228	rs12957463	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs12957463-A	0.7953	9E-17		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
870	chr18	37416317	37416318	rs7233920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q12.3		rs7233920-?	NR	7E-12				NR [~ 8900000] (imputed)	N
870	chr18	37416317	37416318	rs7233920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs7233920-A	0.225	1E-16	(MTAG)	0.0164	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
870	chr18	37416317	37416318	rs7233920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs7233920-A	0.2293	1E-14	(conditional-joint)	0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
870	chr18	37416317	37416318	rs7233920	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs7233920-A	0.2293	2E-18	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
871	chr18	37500062	37500063	rs72895127	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs72895127-T	0.0300436	3E-8		0.0520217	[0.034-0.07] unit increase	Illumina [7980478] (imputed)	N
872	chr18	37619938	37619939	rs307120	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	18q12.3	intergenic	rs307120-?	NR	5E-6		0.0277	[0.016-0.040] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
872	chr18	37680425	37680426	rs56150018	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q12.3	NR	rs56150018-?	NR	5E-6		4.573	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
872	chr18	37681248	37681249	rs7228029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs7228029-T	0.6536	3E-8	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
872	chr18	37719274	37719275	rs16972857	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	18q12.3	NR	rs16972857-T	0.7549	5E-7		0.0805	[0.049-0.112] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
874	chr18	37896595	37896596	rs12455644	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	18q12.3	NR	rs12455644-T	0.9	6E-6				Illumina [6479975] (imputed)	N
874	chr18	37983024	37983025	rs7407346	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	18q12.3	LINC01477	rs7407346-C	0.1789	5E-6		0.006	[0.0035-0.0085] unit increase	Affymetrix [~ 7740000] (imputed)	N
874	chr18	37998766	37998767	rs1836161	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q12.3		rs1836161-?	NR	1E-8				NR [NR]	N
874	chr18	38003409	38003410	rs4799541	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	18q12.3	NR	rs4799541-?		2E-8				NR [7428630] (imputed)	N
874	chr18	38004950	38004951	rs7236534	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18q12.3	intergenic	rs7236534-A	0.0931530041917759	8E-6	(G_Streptococcus_HB)	0.491831	[0.28-0.71] unit decrease	Illumina [7711310] (imputed)	N
874	chr18	38007070	38007071	rs73429770	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q12.3	DNAH11	rs73429770-?		9E-14				NR [7428630] (imputed)	N
875	chr18	38013621	38013622	rs76065536	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	18q12.3	CADPS	rs76065536-?		9E-11				NR [7428630] (imputed)	N
875	chr18	38013621	38013622	rs76065536	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	18q12.3	CRMP1	rs76065536-?		3E-10				NR [7428630] (imputed)	N
875	chr18	38018995	38018996	rs4527088	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q12.3		rs4527088-A	0.5899	7E-19		1.0341		Affymetrix [11880941] (imputed)	N
875	chr18	38021524	38021525	rs4799295	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.3	Intergenic	rs4799295-G	0.6258	1E-9		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
875	chr18	38028164	38028165	rs977143	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs977143-A	0.3735	1E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
875	chr18	38028164	38028165	rs977143	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs977143-A	0.3725	4E-9		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
875	chr18	38028164	38028165	rs977143	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs977143-A	0.3725	1E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
875	chr18	38041035	38041036	rs56302931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs56302931-T	0.6277	5E-9	(conditional-joint)	0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
875	chr18	38075101	38075102	rs203183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q12.3		rs203183-?	NR	1E-12				NR [~ 8900000] (imputed)	N
875	chr18	38098505	38098506	rs4360998	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	18q12.3	NR	rs4360998-C	0.431412	1E-8		0.040166885	[0.026-0.054] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
875	chr18	38111947	38111948	rs116859406	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q12.3	NR	rs116859406-T	0.01045	2E-8	(LUM)	0.2859	NR unit increase	Illumina [1671387] (imputed)	N
876	chr18	38152834	38152835	rs12969848	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q12.3		rs12969848-T	0.5294	2E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
876	chr18	38152834	38152835	rs12969848	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q12.3		rs12969848-T	0.5313	1E-21		1.037		Affymetrix [11880941] (imputed)	N
876	chr18	38152834	38152835	rs12969848	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q12.3	intergenic	rs12969848-T	0.5313	1E-21		1.0361377		Affymetrix [11880941] (imputed)	N
876	chr18	38152834	38152835	rs12969848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q12.3		rs12969848-?	NR	1E-15				NR [~ 8900000] (imputed)	N
876	chr18	38154858	38154859	rs9961783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.3		rs9961783-?	NR	7E-8				NR [~ 8900000] (imputed)	N
876	chr18	38174243	38174244	rs62080072	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs62080072-A	0.742	1E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
876	chr18	38174243	38174244	rs62080072	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q12.3	PIK3C3	rs62080072-A	0.735	1E-9		0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
876	chr18	38220098	38220099	rs10502739	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	18q12.3	KC6	rs10502739-C		8E-6		0.04	[0.02-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
876	chr18	38240380	38240381	rs2469878	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	18q12.3	PIK3C3	rs2469878-C	NR	4E-8		0.007381	[0.0048-0.01] unit increase	Affymetrix [10061374] (imputed)	N
877	chr18	38383482	38383483	rs4368243	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	18q12.3	intergenic	rs4368243-?		6E-8				Illumina [NR]	N
878	chr18	38464854	38464855	rs989885	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q12.3		rs989885-A	0.93675	4E-8		0.024	[0.016-0.032] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
878	chr18	38473437	38473438	rs192115356	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q12.3	NR	rs192115356-?	NR	2E-9				Illumina [7760689] (imputed)	N
878	chr18	38507298	38507299	rs500042	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Suicide	746 Japanese ancestry cases, 14,049 Japanese ancestry controls	NA	18q12.3	intergenic	rs500042-A	NR	3E-7		1.49	[1.28-1.73]	Illumina [8625325] (imputed)	N
878	chr18	38523946	38523946	rs397941973	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	18q12.3	RNU7-145P	rs397941973-G	0.9397	1E-6		0.0871	[0.052-0.122] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
878	chr18	38531626	38531627	rs11875673	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	18q12.3	RNU7-145P	rs11875673-T	0.059	5E-6		0.0811	[0.046-0.116] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
879	chr18	38664916	38664917	rs186191993	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Paramuribaculum sp001689565 abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs186191993-C	0.0169021	4E-8		0.22208	[0.14-0.3] unit increase	Illumina [7980478] (imputed)	N
880	chr18	38747758	38747759	rs2552497	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	18q12.3	NR	rs2552497-?	NR	4E-6		1.46	[1.37-1.56]	Illumina [539000] (imputed)	N
880	chr18	38751512	38751513	rs34253559	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs34253559-C	0.0113522	2E-9		0.103934	[0.07-0.138] unit increase	Illumina [7980478] (imputed)	N
880	chr18	38751512	38751513	rs34253559	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs34253559-C	0.0113522	1E-8		0.121507	[0.08-0.163] unit increase	Illumina [7980478] (imputed)	N
880	chr18	38765658	38765659	rs17697518	22484627	Bradfield JP	2012-04-08	Nat Genet	A genome-wide association meta-analysis identifies new childhood  obesity loci.	Obesity	5,530 European ancestry cases, 8,318 European ancestry controls	2,214 European ancestry cases, 2,674 European ancestry controls	18q12.3	KC6	rs17697518-?	NR	7E-7		1.167	[1.098-1.241]	Affymetrix, Illumina [2700000] (imputed)	N
880	chr18	38777752	38777753	rs2552473	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	18q12.3	intergenic	rs2552473-C	0.4285	1E-6		1.7161	[1.5-1.93]	Illumina [at least 656747] (imputed)	N
881	chr18	38922514	38922515	rs16974420	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	18q12.3		rs16974420-C	0.960308	5E-6		0.0237598	[0.011-0.037] unit increase	Illumina [7666802] (imputed)	N
882	chr18	39026694	39026695	rs34298584	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs34298584-A	0.1688	4E-9		0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
882	chr18	39027042	39027043	rs11875240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs11875240-A	0.8295	9E-9	(conditional-joint)	0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
882	chr18	39038040	39038041	rs184167040	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q12.3	Intergenic	rs184167040-A	1.0	1E-6	(AA)	0.544	unit increase	Illumina [NR] (imputed)	N
883	chr18	39128196	39128197	rs16974953	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	18q12.3	KC6	rs16974953-?		6E-6	(heterogeneous)	0.257	[0.15-0.37] unit decrease	Illumina [1492601] (imputed)	N
883	chr18	39128196	39128197	rs16974953	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	18q12.3	KC6	rs16974953-?		3E-6	(dominant)	0.263	[NR] unit decrease	Illumina [1492601] (imputed)	N
883	chr18	39128196	39128197	rs16974953	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	18q12.3	KC6	rs16974953-?		3E-6	(additive)	0.248	[0.14-0.35] unit decrease	Illumina [1492601] (imputed)	N
883	chr18	39144763	39144764	rs72903956	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18q12.3	NR	rs72903956-C	0.101	5E-9		0.0144162	[0.0096-0.0192] unit increase	NR [9732723] (imputed)	N
883	chr18	39145146	39145147	rs3752060	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	18q12.3	KC6	rs3752060-?	NR	1E-6		0.296	[0.18-0.41] unit increase	Illumina [6319684] (imputed)	N
883	chr18	39148188	39148189	rs1942084	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	18q12.3	NR	rs1942084-T	0.0414	3E-6		2.887	[2.44-3.33]	Illumina [10000612] (imputed)	N
883	chr18	39150105	39150106	rs73450744	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls	NA	18q12.3		rs73450744-?	NR	4E-8		5.765		Illumina [NR] (imputed)	N
883	chr18	39162523	39162524	rs10163854	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q12.3	NA	rs10163854-?		6E-12				Affymetrix, Illumina [NR] (imputed)	N
883	chr18	39187169	39187170	rs16975050	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	18q12.3	KC6	rs16975050-?		5E-7				Illumina [859311]	N
884	chr18	39198996	39198997	rs16975080	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.3	NR	rs16975080-?	NR	4E-8				Affymetrix [NR]	N
884	chr18	39203392	39203393	rs10221329	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18q12.3	NR	rs10221329-C		6E-9		0.1	[0.061-0.139] unit increase	NR [NR]	N
884	chr18	39228309	39228310	rs9958032	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	18q12.3	PIK3C3	rs9958032-?	NR	3E-6		1.467	[0.85-2.08] unit increase	Illumina [> 2500000] (imputed)	N
884	chr18	39252336	39252337	rs9961367	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs obsessive compulsive disorder (ordinary least squares (OLS))	19,099 ADHD cases, 2,688 OCD cases	NA	18q12.3		rs9961367-?	NR	2E-8		0.0237	NR unit increase	NR [5627061] (imputed)	N
884	chr18	39265196	39265197	rs56393977	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q12.3	KC6	rs56393977-G	0.89788	2E-9		0.0203548	[0.014-0.027] unit decrease	NR [16516521] (imputed)	N
884	chr18	39265196	39265197	rs56393977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs56393977-T	0.1075	2E-11	(MTAG)	0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
884	chr18	39265196	39265197	rs56393977	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs56393977-T	0.103	2E-11	(MTAG)	0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
884	chr18	39296487	39296488	rs8099746	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q12.3	PIK3C3, KC6	rs8099746-T	0.8048	1E-8		0.029603759	[0.019-0.04] unit increase	NR [NR]	N
884	chr18	39297253	39297254	rs67050670	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.3	NR	rs67050670-G	0.229	2E-11		0.020272274	[0.014-0.026] unit decrease	NR [~ 10000000] (imputed)	N
884	chr18	39301597	39301598	rs7242858	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	18q12.3	NR	rs7242858-A	0.1856	1E-8		0.015081556	[0.0099-0.0203] unit decrease	Affymetrix [10613246] (imputed)	N
884	chr18	39303626	39303627	rs4890355	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.3	NR	rs4890355-G	0.221	9E-15		0.0100786	[0.0075-0.0126] unit decrease	NR [9732723] (imputed)	N
884	chr18	39303975	39303976	rs4890356	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs4890356-G	0.811	3E-16		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
884	chr18	39304175	39304176	rs4890357	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q12.3	intergenic	rs4890357-T	0.1868	2E-8		5.645	z score decrease	Illumina [18485882] (imputed)	N
884	chr18	39305255	39305256	rs4267411	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q12.3		rs4267411-?	NR	4E-11		0.0226	unit decrease	NR [NR]	N
884	chr18	39315562	39315563	rs67582908	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q12.3	Intergenic	rs67582908-A	0.8113	3E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
884	chr18	39319277	39319278	rs11875397	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	18q12.3	RP11, 188I24.1	rs11875397-T	0.1909	5E-12		0.020080334	[0.014-0.027] unit increase	NR [9417325] (imputed)	N
884	chr18	39319277	39319278	rs11875397	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q12.3	NR	rs11875397-A	NR	2E-9		5.982	z score decrease	Affymetrix [10847151] (imputed)	N
884	chr18	39319277	39319278	rs11875397	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q12.3	NR	rs11875397-A	0.187439	6E-10		6.2	z score decrease	NR [10847151] (imputed)	N
885	chr18	39322638	39322639	rs8089807	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	18q12.3	KC6, PIK3C3	rs8089807-T	0.1866	6E-9		0.0248	[0.016-0.033] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
885	chr18	39363972	39363973	rs1368837	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18q12.3	NR	rs1368837-?	NR	5E-6		0.059179395	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
885	chr18	39397967	39397968	rs79795425	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q12.3	NR	rs79795425-?	NR	3E-6		4839.7725	NR unit decrease	Illumina [2379855]	N
885	chr18	39428609	39428610	rs78036593	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		18q12.3	intergenic	rs78036593-T	0.0130609	3E-6		1.83726	[1.08-2.6] unit increase	Illumina [640625] (imputed)	N
886	chr18	39468981	39468982	rs7237444	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q12.3	PIK3C3	rs7237444-G	0.327748	3E-11		0.0100991	[0.0071-0.0131] unit increase	Affymetrix [12370749]	N
886	chr18	39491657	39491658	rs8089834	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,912 European ancestry individuals	NA	18q12.3	NR	rs8089834-T	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
886	chr18	39491657	39491658	rs8089834	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	18q12.3	NR	rs8089834-T	NR	8E-6				Affymetrix [~ 8270000] (imputed)	N
886	chr18	39505926	39505927	rs72905701	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs72905701-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
886	chr18	39510073	39510074	rs4447506	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	18q12.3	PIK3C3	rs4447506-G	0.363877	1E-6		1.11	[1.06-1.16]	Illumina [41266535] (imputed)	N
887	chr18	39605065	39605066	rs7237783	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs7237783-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
887	chr18	39644246	39644247	rs559231	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q12.3	PIK3C3	rs559231-G	0.60699	2E-11		0.00952495	[0.0068-0.0123] unit decrease	Affymetrix [12370749]	N
887	chr18	39644246	39644247	rs559231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs559231-?	NR	1E-12				NR [~ 8900000] (imputed)	N
887	chr18	39686942	39686943	rs3932738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs3932738-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
889	chr18	39895630	39895631	rs1461705	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	18q12.3		rs1461705-T	0.39	2E-6		1.583	[0.93-2.23] unit decrease	NR [534934]	N
889	chr18	39907413	39907414	rs4243260	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	18q12.3		rs4243260-A	NR	4E-6		1.544	[0.89-2.19] unit decrease	NR [534934]	N
889	chr18	39910591	39910592	rs8096564	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs8096564-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
889	chr18	39914521	39914522	rs16975918	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18q12.3		rs16975918-T	0.32	4E-8				NR [NR] (imputed)	N
889	chr18	39914521	39914522	rs16975918	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	18q12.3		rs16975918-T	0.32	3E-7		0.011	mmol/L decrease	NR [NR] (imputed)	N
889	chr18	39914521	39914522	rs16975918	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18q12.3		rs16975918-T	0.32	4E-12		0.011	% increase	NR [NR] (imputed)	N
889	chr18	39914869	39914870	rs16975921	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q12.3	NA	rs16975921-A	0.6931	1E-11		0.0124	[0.0089-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
889	chr18	39937508	39937509	rs9304270	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.3	PIK3C3	rs9304270-A	0.122	2E-6	(C-peptide )	0.03	[NR] ng/mL increase	Illumina [899892]	N
889	chr18	39940965	39940966	rs346452	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	18q12.3	PIK3C3	rs346452-?	0.54	2E-6	(Age 20-81 years)	1.32	[1.18-1.47]	Affymetrix, Illumina [up to 17585496] (imputed)	N
890	chr18	39999242	39999243	rs187860354	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin saturation across sleep episode)	21,126 European, African American, Hispanic/Latino or East Asian ancestry individuals	NA	18q12.3		rs187860354-G	NR	7E-8		0.436	[0.28-0.59] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
890	chr18	40023305	40023306	rs346221	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	18q12.3	RIT2	rs346221-A	0.64	4E-6	(Age 20-81 years)	1.31	[1.17-1.47]	Affymetrix, Illumina [up to 17585496] (imputed)	N
890	chr18	40023781	40023782	rs12606301	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	intergenic	rs12606301-G	NR	5E-6		0.171	[0.098-0.244] unit increase	Illumina [628922]	N
890	chr18	40058881	40058882	rs7235528	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	intergenic	rs7235528-T	NR	4E-6		0.167	[0.096-0.238] unit increase	Illumina [628922]	N
890	chr18	40059620	40059621	rs16976171	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q12.3	RIT2	rs16976171-T	0.11	4E-6	(AA)	0.2	[0.12-0.28] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
890	chr18	40063829	40063830	rs346240	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q12.3	NR	rs346240-G	0.2231	4E-8		0.031	[0.02-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
890	chr18	40066005	40066006	rs410150	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q12.3	NR	rs410150-C	0.2139	1E-9		0.0289	[0.019-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
890	chr18	40075955	40075956	rs8090196	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	intergenic	rs8090196-T	NR	3E-6		0.179	[0.1-0.25] unit decrease	Illumina [628922]	N
890	chr18	40102640	40102641	rs1346987	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	intergenic	rs1346987-C	NR	2E-6		0.18	[0.11-0.25] unit increase	Illumina [628922]	N
890	chr18	40105656	40105657	rs7231412	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	18q12.3	intergenic	rs7231412-T	NR	6E-6		0.17	[0.097-0.243] unit increase	Illumina [628922]	N
891	chr18	40135968	40135969	rs12954824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs12954824-?	NR	3E-8				NR [~ 8900000] (imputed)	N
891	chr18	40141989	40141990	rs12373388	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs12373388-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
891	chr18	40147670	40147671	rs7239883	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q12.3	NR	rs7239883-G	NR	7E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
891	chr18	40147670	40147671	rs7239883	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q12.3	NR	rs7239883-A	0.608422780516914	2E-7		0.014340362	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
891	chr18	40147670	40147671	rs7239883	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.3	LOC284260	rs7239883-G	0.394	3E-7		0.015	[0.0093-0.0211] kg/m2 increase	Affymetrix, Illumina [2550021]	N
891	chr18	40147670	40147671	rs7239883	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.3	LOC284260	rs7239883-G	0.393	2E-7	(EA)	0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
891	chr18	40147670	40147671	rs7239883	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.3	LOC284260	rs7239883-G	0.391	2E-8	(EA, women)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
891	chr18	40147670	40147671	rs7239883	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q12.3	RIT2	rs7239883-A	0.6042	2E-9	(EA)	0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
891	chr18	40147670	40147671	rs7239883	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q12.3	RIT2	rs7239883-A	0.6042	1E-8	(EA, women)	0.0255	[0.017-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
891	chr18	40166870	40166871	rs7228101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs7228101-A	0.2342	1E-8	(MTAG)	0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
891	chr18	40191570	40191571	rs16976358	26314684	Liu X	2015-08-28	Autism Res	Genome-wide Association Study of Autism Spectrum Disorder in the East Asian Populations.	Autism spectrum disorder	156 Japanese ancestry cases, 620 Japanese ancestry controls	205 Japanese ancestry cases, 184 Japanese ancestry controls, 418 Han Chinese ancestry cases and 836 Han Chinese ancestry controls from 418 trios	18q12.3	RIT2	rs16976358-C		6E-7	(Japanese)	2.0506	[NR]	Affymetrix [561592]	N
891	chr18	40231832	40231833	rs592278	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		18q12.3	LINC00907	rs592278-A	0.415	7E-6		0.36	[0.21-0.51] unit increase	Illumina [640625] (imputed)	N
891	chr18	40237555	40237556	rs12457128	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs12457128-A	0.7373	3E-10	(MTAG)	0.0094	[0.0065-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
891	chr18	40238334	40238335	rs9916901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs9916901-T	0.7377	8E-9		0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
892	chr18	40240575	40240576	rs28456360	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	18q12.3	RIT2	rs28456360-?		2E-14				NR [7428630] (imputed)	N
892	chr18	40243410	40243411	rs8090578	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs8090578-C	0.722	7E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
892	chr18	40244447	40244448	rs9964638	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	18q12.3	NR	rs9964638-?		1E-11	(Superior corona radiata)			NR [8955960] (imputed)	N
892	chr18	40249521	40249522	rs8085433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q12.3		rs8085433-?	NR	2E-12				NR [~ 8900000] (imputed)	N
892	chr18	40288027	40288028	rs8086502	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q12.3		rs8086502-G	0.31	1E-36		12.65	z score increase	Affymetrix [9061022] (imputed)	N
892	chr18	40288292	40288293	rs8085804	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18q12.3		rs8085804-T	0.3	3E-18		8.72	z score increase	Affymetrix [9061022] (imputed)	N
892	chr18	40288292	40288293	rs8085804	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q12.3	NR	rs8085804-T	0.2725	1E-17				NR [9056863] (imputed)	N
892	chr18	40288292	40288293	rs8085804	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	18q12.3	RIT2	rs8085804-?	0.3695	8E-6	(VRM)			Illumina [475971]	N
892	chr18	40301640	40301641	rs3810037	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	18q12.3		rs3810037-T	0.31	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
892	chr18	40301640	40301641	rs3810037	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18q12.3	NR	rs3810037-T	0.277	1E-13				NR [9056863] (imputed)	N
892	chr18	40308747	40308748	rs3910101	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q12.3	Intergenic	rs3910101-A	0.2889	3E-9	(MTAG)	0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
892	chr18	40313139	40313140	rs12454989	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs12454989-T	0.7458	2E-8	(conditional-joint)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
892	chr18	40318076	40318077	rs13313639	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q12.3	BBS9	rs13313639-?		1E-10				NR [7428630] (imputed)	N
892	chr18	40318076	40318077	rs13313639	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.3	NR	rs13313639-A	0.284	6E-9		0.00701726	[0.0046-0.0094] unit increase	NR [9732723] (imputed)	N
892	chr18	40323566	40323567	rs148544378	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs148544378-C	0.982	1E-11		0.05	[0.036-0.064] unit increase	NR [NR] (imputed)	N
892	chr18	40323566	40323567	rs148544378	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q12.3	RIT2	rs148544378-C	0.979442	3E-9		0.043455	[0.029-0.058] unit decrease	NR [16516521] (imputed)	N
892	chr18	40323566	40323567	rs148544378	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	18q12.3	NR	rs148544378-?		2E-12		0.0531894	[0.038-0.068] unit increase	Affymetrix [19400418] (imputed)	N
892	chr18	40323566	40323567	rs148544378	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q12.3	RIT2	rs148544378-T	0.0208	3E-12		0.05777033	[0.042-0.074] unit decrease	Affymetrix [11515109] (imputed)	N
892	chr18	40334099	40334100	rs618236	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	18q12.3		rs618236-A	NR	9E-6		1.965	[1.11-2.82] unit decrease	NR [534934]	N
893	chr18	40418430	40418431	rs473976	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	18q12.3	NR	rs473976-?	NR	5E-6	(family_Enterobacteriaceae)	0.763891	[0.46-1.07] unit increase	Affymetrix [210924]	N
893	chr18	40437650	40437651	rs16977065	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	18q12.3	intergenic	rs16977065-?	0.044	1E-7	(CSJC , EA, RF+)	33.72	[NR] unit increase	Illumina [534053]	N
893	chr18	40494936	40494937	rs9962013	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18q12.3	RIT2	rs9962013-T	0.847	5E-7	(Coxibs [M01AH])	2.5		Illumina [16500000] (imputed)	N
894	chr18	40509303	40509304	rs565924	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.3	NR	rs565924-?	NR	5E-10				Affymetrix [NR]	N
894	chr18	40516527	40516528	rs568939	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	SYT4	rs568939-?	NR	3E-6	(PC 34:3)	0.26060417	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
894	chr18	40520058	40520059	rs41439051	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.3	NR	rs41439051-?	NR	5E-12				Affymetrix [NR]	N
894	chr18	40528306	40528307	rs111692872	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.3	NR	rs111692872-?	NR	1E-6		0.0081951	[0.0049-0.0115] unit increase	Affymetrix [805426] (imputed)	N
894	chr18	40560193	40560194	rs4541159	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	SYT4	rs4541159-?	NR	4E-6	(inositol)	0.5064029	[0.29-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
894	chr18	40591083	40591084	rs9958208	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	18q12.3	RIT2	rs9958208-A	0.099	5E-6		1.62	[1.32-1.99]	Affymetrix [444044]	N
895	chr18	40655469	40655470	rs62092708	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1446 sp002329245 abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs62092708-A	0.0343622	2E-8		0.0961066	[0.062-0.13] unit increase	Illumina [7980478] (imputed)	N
895	chr18	40657902	40657903	rs55901120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.3	NR	rs55901120-?	NR	4E-6		0.0078455	[0.0045-0.0112] unit increase	Affymetrix [805426] (imputed)	N
895	chr18	40673379	40673380	rs12456492	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	18q12.3	RIT2	rs12456492-A		2E-9		0.0892	[0.06-0.118] unit decrease	Illumina [NR]	N
895	chr18	40673379	40673380	rs12456492	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	18q12.3	RIT2	rs12456492-A	0.6816	4E-23		0.0983	[0.079-0.118] unit decrease	NR [7784415] (imputed)	N
895	chr18	40673379	40673380	rs12456492	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	18q12.3	SYT4	rs12456492-G	0.315	6E-16		1.1	[1.07-1.12]	Illumina [11933700] (imputed)	N
895	chr18	40673379	40673380	rs12456492	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	18q12.3	RIT2	rs12456492-G	0.307	8E-12		1.11	[1.08-1.14]	Illumina [7893274] (imputed)	N
895	chr18	40673379	40673380	rs12456492	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	18q12.3	RIT2	rs12456492-?	NR	2E-10		1.19	[NR]	Illumina [2500000] (imputed)	N
895	chr18	40678234	40678235	rs4130047	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	18q12.3	RIT2	rs4130047-?	NR	5E-8				Illumina [5843213] (imputed)	N
895	chr18	40678234	40678235	rs4130047	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	18q12.3	RIT2	rs4130047-?	NR	2E-10		1.1148272	[1.08-1.15]	Illumina [12438219] (imputed)	N
895	chr18	40678234	40678235	rs4130047	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	18q12.3	RIT2, SYT4	rs4130047-C	0.31	2E-7		1.16	[1.10-1.23]	Illumina [522782]	N
895	chr18	40679781	40679782	rs147722442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs147722442-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
895	chr18	40691674	40691675	rs3861289	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	18q12.3	NR	rs3861289-A	NR	5E-8	(Cox proportional hazards regression model)	19.16	[6.62-55.40]	Illumina [810622]	N
895	chr18	40699201	40699202	rs12607055	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	18q12.3	RIT2, SYT4	rs12607055-C	NR	2E-6		3.5	[2.10-5.90]	Illumina [2017629] (imputed)	N
895	chr18	40701257	40701263	rs144012557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q12.3		rs144012557-C	NR	3E-14		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
895	chr18	40704482	40704483	rs74893887	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	18q12.3	RIT2	rs74893887-C	0.0345	4E-6		2.252	[1.595-3.178]	Affymetrix, Illumina [14074516] (imputed)	N
895	chr18	40708037	40708038	rs1356506	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q12.3	NA	rs1356506-T	0.6287	8E-15		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
895	chr18	40708904	40708905	rs1518170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	18q12.3		rs1518170-C	0.686865	1E-8		0.0194854	[0.013-0.026] unit decrease	Illumina [13479178] (imputed)	N
895	chr18	40708904	40708905	rs1518170	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q12.3	RIT2, SYT4	rs1518170-C	0.684	7E-9	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
895	chr18	40710596	40710597	rs35735971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q12.3		rs35735971-G	NR	3E-16		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
895	chr18	40712475	40712476	rs4293465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	18q12.3		rs4293465-G	0.687237	2E-8		0.0165607	[0.011-0.022] unit decrease	Illumina [13479924] (imputed)	N
895	chr18	40721489	40721490	rs1518142	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q12.3	NR	rs1518142-G	NR	2E-6		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
895	chr18	40721489	40721490	rs1518142	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q12.3	RIT2, SYT4	rs1518142-A	0.45	1E-9		0.016	[0.01-0.022] unit decrease	Illumina [6108953] (imputed)	N
895	chr18	40735530	40735531	rs62092069	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q12.3	RIT2	rs62092069-G	0.628841	4E-11		0.0130536	[0.0092-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
895	chr18	40735530	40735531	rs62092069	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q12.3	NR	rs62092069-G	0.627179	4E-8		0.0116985	[0.0075-0.0159] unit increase	NR [NR]	N
895	chr18	40735530	40735531	rs62092069	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	18q12.3	RIT2	rs62092069-A	0.373	2E-8		0.0148	[0.0097-0.0199] unit increase	Illumina [~ 250000] (imputed)	N
895	chr18	40736205	40736206	rs1518146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q12.3		rs1518146-?	NR	4E-10				NR [~ 8900000] (imputed)	N
895	chr18	40736589	40736590	rs1158805	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q12.3	NA	rs1158805-A	0.3797	5E-13		0.0133	[0.0098-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
895	chr18	40744789	40744790	rs1834144	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q12.3	RIT2	rs1834144-C	0.626766	3E-8		0.00792997	[0.0051-0.0107] unit increase	Affymetrix [12370749]	N
895	chr18	40744789	40744790	rs1834144	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q12.3	RIT2	rs1834144-C	0.62671	5E-9		0.0119111	[0.0079-0.0159] unit decrease	Affymetrix [NR] (imputed)	N
895	chr18	40744789	40744790	rs1834144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs1834144-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
895	chr18	40744789	40744790	rs1834144	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q12.3	NR	rs1834144-A	0.3736	2E-12		0.018117554	[0.013-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
895	chr18	40744789	40744790	rs1834144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs1834144-?	NR	8E-13				NR [~ 8900000] (imputed)	N
895	chr18	40744789	40744790	rs1834144	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q12.3	NR	rs1834144-?	NR	9E-7	(female)	0.17487	[0.11-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
895	chr18	40744789	40744790	rs1834144	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q12.3	NR	rs1834144-?	NR	6E-9		0.12733	[0.084-0.17] unit decrease	Affymetrix [7794483] (imputed)	N
895	chr18	40757398	40757399	rs1364411	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q12.3	RIT2	rs1364411-T	0.75	8E-6		0.0356	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr18	40757853	40757853	rs397795971	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q12.3	RIT2	rs397795971-T	0.7453	5E-6		0.0358	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr18	40760145	40760146	rs1518159	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q12.3	NA	rs1518159-T	0.2499	2E-12		0.0138	[0.0099-0.0177] unit decrease	NR [~ 27400000] (imputed)	N
895	chr18	40761975	40761976	rs7231852	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	18q12.3	NR	rs7231852-A	0.2502	2E-12		0.0145	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
895	chr18	40761975	40761976	rs7231852	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q12.3	RIT2, LOC284260	rs7231852-A	0.263561922242735	3E-8		0.018754512	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
896	chr18	40765394	40765395	rs1518156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	SYT4	rs1518156-?	NR	3E-6	(inositol)	0.5026595	[0.29-0.71] unit increase	Affymetrix [at least 2500000] (imputed)	N
896	chr18	40768308	40768309	rs59499656	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	89,683 European ancestry individuals	NA	18q12.3		rs59499656-A	0.66	5E-8		0.215	[0.14-0.29] unit decrease	Affymetrix [8918919] (imputed)	N
896	chr18	40768308	40768309	rs59499656	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18q12.3		rs59499656-A	0.66	2E-13				NR [NR] (imputed)	N
896	chr18	40768308	40768309	rs59499656	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	18q12.3		rs59499656-A	0.66	5E-11		0.013	mmol/L decrease	NR [NR] (imputed)	N
896	chr18	40768308	40768309	rs59499656	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18q12.3		rs59499656-A	0.66	2E-18		0.014	% increase	NR [NR] (imputed)	N
896	chr18	40768308	40768309	rs59499656	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	18q12.3	SYT4	rs59499656-A	0.655	2E-9		0.028	[0.018-0.038] SD units decrease	NR [9926106] (imputed)	N
896	chr18	40768308	40768309	rs59499656	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (moderate intensity activity duration)	91,105 European ancestry individuals	NA	18q12.3	SYT4	rs59499656-A	0.655476	8E-6		0.02195492	[0.012-0.032] SD units decrease	NR [9926106] (imputed)	N
896	chr18	40768308	40768309	rs59499656	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (average acceleration)	91,084 European ancestry individuals	NA	18q12.3	RIT2, SYT4	rs59499656-A	0.66	2E-9		0.23	milli-gravities decrease	Affymetrix [11800000] (imputed)	N
896	chr18	40772285	40772286	rs816750	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	18q12.3	PROX1	rs816750-C	0.5046	3E-7		1.06	[1.04-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
896	chr18	40808797	40808798	rs17664267	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	18q12.3	intergenic	rs17664267-T	0.19	7E-6	(maternal warmth)	1.39	[NR] unit increase	Perlegen [429901]	N
896	chr18	40841184	40841185	rs4624274	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	18q12.3	SYT4	rs4624274-G	0.5677	1E-6		0.0073	[0.0044-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
896	chr18	40847907	40847908	rs17721715	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	RIT2	rs17721715-?	NR	9E-6	(LPC 22:6)	0.5834026	[0.33-0.84] unit increase	Affymetrix [at least 2500000] (imputed)	N
896	chr18	40847907	40847908	rs17721715	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	RIT2	rs17721715-?	NR	5E-6	(LPC 20:4)	0.5945621	[0.34-0.85] unit increase	Affymetrix [at least 2500000] (imputed)	N
896	chr18	40860407	40860408	rs79666748	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.3	NR	rs79666748-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
896	chr18	40865472	40865473	rs139253024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs139253024-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
896	chr18	40872272	40872273	rs12457996	21042317	Wray NR	2010-11-02	Mol Psychiatry	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	18q12.3	intergenic	rs12457996-T	0.77	6E-6		1.15	[NR]	Affymetrix, Illumina [1251157] (imputed)	N
896	chr18	40880793	40880794	rs116965780	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.3	NR	rs116965780-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
896	chr18	40885560	40885561	rs61670395	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	18q12.3	intergenic	rs61670395-?	0.06	6E-6	(adjusted for CYP2C19*2)	0.25	NR unit decrease	Illumina [5009928] (imputed)	N
897	chr18	40901975	40901976	rs4435343	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.3	NR	rs4435343-?		8E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
897	chr18	40901975	40901976	rs4435343	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q12.3	NR	rs4435343-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
897	chr18	40932005	40932006	rs16977484	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.3	NR	rs16977484-?	NR	1E-7		0.0092531	[0.0058-0.0127] unit increase	Affymetrix [805426] (imputed)	N
897	chr18	40975665	40975666	rs117871597	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	18q12.3		rs117871597-T	0.01	2E-8				NR [NR] (imputed)	N
897	chr18	40975665	40975666	rs117871597	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	18q12.3		rs117871597-T	0.01	7E-7		1.17	[0.7-1.64] unit decrease	NR [NR] (imputed)	N
897	chr18	40992697	40992698	rs555267	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.3	SYT4	rs555267-T	0.32	8E-7		0.016	[0.0093-0.0219] kg/m2 increase	Affymetrix, Illumina [2550021]	N
897	chr18	40992697	40992698	rs555267	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q12.3	SYT4	rs555267-T	0.317	1E-6	(EA)	0.016	[0.0096-0.0226] kg/m2 increase	Affymetrix, Illumina [2550021]	N
897	chr18	41003179	41003180	rs597167	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs597167-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
897	chr18	41022826	41022827	rs8095594	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	18q12.3	SYT4	rs8095594-?	NR	9E-6				Illumina [7401356] (imputed)	N
898	chr18	41039774	41039778	rs10584210	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	18q12.3		rs10584210-?	NR	8E-6				Illumina [7401356] (imputed)	N
898	chr18	41042546	41042547	rs80284955	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Cognitive function	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	18q12.3	intergenic	rs80284955-G		3E-7		1.1	[NR] unit decrease	Illumina [NR] (imputed)	N
898	chr18	41052406	41052407	rs149024168	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	18q12.3	SYT4	rs149024168-G	0.011	5E-6		0.165	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
898	chr18	41052406	41052407	rs149024168	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	18q12.3	SYT4	rs149024168-G	0.011	3E-7	(statin-free)	0.233	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
898	chr18	41089307	41089308	rs188926264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs188926264-?	NR	7E-9				NR [~ 8900000] (imputed)	N
899	chr18	41159005	41159006	rs78626408	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18q12.3		rs78626408-C	0.13	2E-12		7.01	z score increase	Affymetrix [9061022] (imputed)	N
899	chr18	41159005	41159006	rs78626408	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q12.3	NR	rs78626408-C	0.1315	3E-12				NR [9056863] (imputed)	N
899	chr18	41162641	41162642	rs9944970	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q12.3		rs9944970-C	0.13	3E-16		8.18	z score increase	Affymetrix [9061022] (imputed)	N
899	chr18	41189459	41189460	rs1405723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	RIT2	rs1405723-?	NR	9E-6	(deoxycholate)	0.31904823	[0.18-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
899	chr18	41275396	41275397	rs11662496	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	18q12.3	NR	rs11662496-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.3888888	[NR]	Affymetrix, Illumina [NR] (imputed)	N
900	chr18	41311602	41311603	rs6507538	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs6507538-T	0.544	3E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
900	chr18	41314170	41314171	rs2359180	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.3	NR	rs2359180-G	0.369	7E-10		0.00741495	[0.0051-0.0098] unit decrease	NR [9732723] (imputed)	N
900	chr18	41314170	41314171	rs2359180	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.3	NR	rs2359180-G	0.369	5E-8		0.014389442	[0.0092-0.0196] unit decrease	NR [~ 10000000] (imputed)	N
900	chr18	41364210	41364211	rs78088272	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18q12.3	intergenic	rs78088272-C	NR	8E-8	(AA)			Illumina [up to 11995908] (imputed)	N
900	chr18	41364210	41364211	rs78088272	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	18q12.3	intergenic	rs78088272-C	NR	8E-8				Illumina [up to 11995908] (imputed)	N
900	chr18	41413083	41413084	rs551160836	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	18q12.3	SYT4, LINC01478	rs551160836-T	NR	8E-7		4.923	NR z score decrease	Illumina [7839440] (imputed)	N
900	chr18	41414228	41414229	rs140914711	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative stroke after cardiac surgery	17 cases, 1,089 controls	NA	18q12.3	RNU6-443P	rs140914711-?	NR	4E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and renal failure)	25.0	[7.69-100]	Illumina [9007469] (imputed)	N
901	chr18	41424096	41424097	rs62103056	32433338	St Jean PL	2020-05-19	Pharmacogenet Genomics	Pharmacogenetic assessment of tafenoquine efficacy in patients with Plasmodium vivax malaria.	Tafenoquine efficacy in P. vivax malaria (recurrence by 6 months)	438 cases	NA	18q12.3	RNU6-443P	rs62103056-A	0.25	4E-8		2.98	[1.99-4.46]	Affymetrix [10600000] (imputed)	N
901	chr18	41459422	41459423	rs12457358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.3		rs12457358-?	NR	1E-12				NR [~ 8900000] (imputed)	N
901	chr18	41464599	41464600	rs1460510	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q12.3	intergenic	rs1460510-T	0.2748	1E-9		0.0129	[0.0088-0.017] unit increase	Affymetrix [18391927] (imputed)	N
901	chr18	41465699	41465699	rs111745540	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	18q12.3		rs111745540-?	NR	5E-6		0.7373145	[0.42-1.05] unit increase	Illumina [9906551] (imputed)	N
901	chr18	41480526	41480527	rs1380836	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q12.3	KRT8P5	rs1380836-G	0.292	2E-6	(sICAM-1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
901	chr18	41486748	41486749	rs12326432	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q12.3	NR	rs12326432-?		6E-6				Illumina [4322238] (imputed)	N
901	chr18	41490062	41490063	rs12963655	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	18q12.3	SYT4	rs12963655-?	NR	8E-8	(conditioned on rs168622)	0.095	[0.06-0.13] unit decrease	Affymetrix [9346801] (imputed)	N
901	chr18	41494416	41494417	rs10502822	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	18q12.3	Intergenic	rs10502822-?	NR	3E-6				Illumina [9008729] (imputed)	N
901	chr18	41495052	41495053	rs140134075	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	18q12.3		rs140134075-T	NR	5E-6		3.3134	[1.92-4.71] unit increase	Illumina [NR] (imputed)	N
901	chr18	41543936	41543937	rs2359442	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 22)	4,680 European ancestry individuals	3,566 European ancestry individuals	18q12.3		rs2359442-A	0.49742434	3E-9				Illumina [7417619] (imputed)	N
902	chr18	41604392	41604395	rs201049390	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	18q12.3	NR	rs201049390-?	NR	7E-6		0.1789	[0.1-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
902	chr18	41666717	41666718	rs185713637	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides clarus abundance in stool	5,959 Finnish ancestry individuals	NA	18q12.3		rs185713637-C	0.015869	3E-8		0.338101	[0.22-0.46] unit increase	Illumina [7980478] (imputed)	N
903	chr18	41693863	41693864	rs78251123	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q12.3	SETBP1	rs78251123-A	0.0364	3E-8		0.034966532	[0.023-0.047] unit decrease	Affymetrix [11515109] (imputed)	N
903	chr18	41763391	41763392	rs9304301	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	18q12.3	NR	rs9304301-?	NR	4E-6	(AA)	18.99	[17.15-20.83]	Illumina [905956]	N
903	chr18	41779827	41779828	rs9748860	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	18q12.3	NA	rs9748860-G		2E-8		0.0104645	[0.0068-0.0141] unit increase	Illumina [13288253] (imputed)	N
903	chr18	41805154	41805155	rs9675612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.3	Intergenic	rs9675612-T	0.1206	1E-8	(MTAG)	0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
904	chr18	41870242	41870243	rs12962305	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	18q12.3	NR	rs12962305-T	0.25	5E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [15838848] (imputed)	N
904	chr18	41870242	41870243	rs12962305	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	18q12.3	SETBP1	rs12962305-T	0.25	1E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [6864281] (imputed)	N
904	chr18	41873026	41873027	rs3951468	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q12.3	LINC01478	rs3951468-C	0.473813	6E-9		0.0109367	[0.0073-0.0146] unit decrease	NR [13737936] (imputed)	N
904	chr18	41899244	41899245	rs12957236	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	18q12.3	SYT4, LINC01478	rs12957236-T	0.252374946	8E-6		1.100537	[1.055265996-1.147750003]	Illumina [10439017] (imputed)	N
904	chr18	41899725	41899726	rs9807203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q12.3		rs9807203-T	NR	2E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
904	chr18	41899725	41899726	rs9807203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.3		rs9807203-?	NR	3E-12				NR [~ 8900000] (imputed)	N
904	chr18	41924036	41924037	rs978490	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	18q12.3	intergenic	rs978490-A		2E-6		0.168	unit increase	Affymetrix [NR]	N
905	chr18	41946664	41946665	rs144171632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q12.3		rs144171632-C	NR	2E-8		0.0457	[0.03-0.062] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
905	chr18	41946664	41946665	rs144171632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q12.3		rs144171632-?	NR	1E-12				NR [~ 8900000] (imputed)	N
905	chr18	41969070	41969071	rs7228835	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	18q12.3	NR	rs7228835-?	NR	1E-15				Affymetrix, Illumina [6210360] (imputed)	N
905	chr18	41969070	41969071	rs7228835	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	18q12.3	NR	rs7228835-C	0.1217	3E-17		0.5144	[0.39-0.63] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
905	chr18	41973778	41973779	rs9965539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs9965539-A	0.132684	1E-14		0.025468837	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	41973778	41973779	rs9965539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs9965539-A	0.132697	2E-23		0.032941442	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	41973778	41973779	rs9965539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs9965539-A	0.155232	1E-25				Affymetrix, Illumina [24649327] (imputed)	N
905	chr18	41973778	41973779	rs9965539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q12.3	NR	rs9965539-A	0.133846	5E-20		0.025095	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
905	chr18	41973778	41973779	rs9965539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q12.3	NR	rs9965539-A	0.133702	1E-27		0.031107	[0.026-0.037] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
905	chr18	41975801	41975802	rs9948878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs9948878-T	0.147567	4E-11				Affymetrix, Illumina [23467995] (imputed)	N
905	chr18	41980500	41980501	rs16977972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16977972-T	0.1445	3E-16		0.04485388	[0.034-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
905	chr18	41995503	41995504	rs75957619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q12.3		rs75957619-G	NR	1E-23		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
905	chr18	41995503	41995504	rs75957619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q12.3	NR	rs75957619-G	0.131699	7E-12		0.019199	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
905	chr18	41999276	41999277	rs138080687	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	18q12.3		rs138080687-A	NR	5E-6		1.3239772	[1.20-1.44]	Illumina [11600722] (imputed)	N
905	chr18	42002738	42002739	rs182599614	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18q12.3	NR	rs182599614-?	NR	7E-8	(AA)	1.4306	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
905	chr18	42005537	42005538	rs79010100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs79010100-C	0.130142	3E-61		0.056255307	[0.05-0.063] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	42008096	42008097	rs12606620	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q12.3	SYT4, SETBP1	rs12606620-G		9E-8		0.313	unit increase	Affymetrix [at least 2696785] (imputed)	N
905	chr18	42008096	42008097	rs12606620	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q12.3	SYT4, SETBP1	rs12606620-G		3E-12		0.292	unit increase	Affymetrix [at least 2696785] (imputed)	N
905	chr18	42008096	42008097	rs12606620	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q12.3	SYT4, SETBP1	rs12606620-G		2E-8	(EA)	0.245	unit increase	Affymetrix [at least 2696785] (imputed)	N
905	chr18	42008096	42008097	rs12606620	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q12.3	SYT4, SETBP1	rs12606620-G		1E-10		0.251	unit increase	Affymetrix [at least 2696785] (imputed)	N
905	chr18	42008096	42008097	rs12606620	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q12.3	SYT4, SETBP1	rs12606620-G		2E-16		0.229	unit increase	Affymetrix [at least 2696785] (imputed)	N
905	chr18	42008280	42008287	rs138110963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q12.3		rs138110963-T	NR	1E-15		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
905	chr18	42008280	42008287	rs138110963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q12.3		rs138110963-T	NR	6E-15		0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
905	chr18	42008392	42008393	rs9947269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs9947269-C	0.130333	1E-19		0.030502511	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	42014478	42014479	rs11082383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q12.3	NR	rs11082383-C	0.13117	1E-35		0.034007	[0.029-0.039] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
905	chr18	42014478	42014479	rs11082383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs11082383-C	0.1321	1E-40		0.0729372	[0.062-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
905	chr18	42017900	42017901	rs80277818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs80277818-G	0.127882	2E-13		0.024287116	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr18	42017900	42017901	rs80277818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q12.3	NR	rs80277818-G	0.129112	3E-18		0.025216	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
905	chr18	42017900	42017901	rs80277818	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	18q12.3	LINC01478	rs80277818-G	0.26	8E-55		0.075	NR unit decrease	Illumina [9591901] (imputed)	N
905	chr18	42017900	42017901	rs80277818	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	18q12.3	LINC01478	rs80277818-G	0.13	3E-80		0.033	unit increase	NR [NR]	N
905	chr18	42017900	42017901	rs80277818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q12.3		rs80277818-?	NR	1E-13				NR [~ 8900000] (imputed)	N
905	chr18	42022801	42022802	rs1397988	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	18q12.3	SETBP1	rs1397988-?	NR	7E-7		1.6	[1.01-2.19] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
905	chr18	42033253	42033254	rs12454829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs12454829-A	0.127633	4E-21		0.032571454	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	42033253	42033254	rs12454829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs12454829-C	0.87455	1E-43				Affymetrix, Illumina [17210439] (imputed)	N
905	chr18	42033253	42033254	rs12454829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q12.3	NR	rs12454829-C	0.871916	7E-45		0.040543	[0.035-0.046] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
905	chr18	42040025	42040026	rs11082384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q12.3		rs11082384-C	NR	2E-26		0.0313	[0.026-0.037] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
905	chr18	42040113	42040114	rs11082385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs11082385-T	0.152748	7E-15				Affymetrix, Illumina [24332387] (imputed)	N
905	chr18	42040378	42040399	rs35695997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs35695997-G	0.127074	8E-15		0.026119024	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr18	42040378	42040399	rs35695997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs35695997-G	0.127	7E-20		0.03094637	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr18	42041062	42041063	rs12606438	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	18q12.3	LINC01478	rs12606438-?	NR	1E-10		0.04151	[0.029-0.054] unit increase novel	Illumina [6108953] (imputed)	N
905	chr18	42041130	42041131	rs72899729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs72899729-G	0.013334	8E-14		0.07627157	[0.056-0.096] unit increase	Affymetrix [93095623] (imputed)	N
905	chr18	42043950	42043951	rs1511754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q12.3		rs1511754-G	NR	8E-20		0.0241	[0.019-0.029] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
905	chr18	42043950	42043951	rs1511754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	18q12.3		rs1511754-G	0.242005	3E-14		0.0300885	[0.022-0.038] unit increase	Illumina [13479091] (imputed)	N
905	chr18	42043950	42043951	rs1511754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	18q12.3	NR	rs1511754-A	0.760246	2E-14		0.033297	[0.025-0.042] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
905	chr18	42043950	42043951	rs1511754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q12.3	NR	rs1511754-G	0.128568	8E-16		0.021882	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
905	chr18	42050875	42050876	rs4586544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs4586544-A	0.127811	8E-12		0.0222716	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr18	42050875	42050876	rs4586544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q12.3	NR	rs4586544-A	0.128122	9E-16		0.022331	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
905	chr18	42062379	42062380	rs75763843	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs75763843-C	0.147641	4E-19				Affymetrix, Illumina [20825802] (imputed)	N
905	chr18	42062379	42062380	rs75763843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q12.3		rs75763843-?	NR	7E-11				NR [~ 8900000] (imputed)	N
905	chr18	42062379	42062380	rs75763843	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs75763843-C	0.1293	8E-14		0.04017044	[0.03-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
905	chr18	42071224	42071225	rs11082394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.3		rs11082394-?	NR	2E-18				NR [~ 8900000] (imputed)	N
905	chr18	42071224	42071225	rs11082394	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.3	LINC01478	rs11082394-T	0.3331	1E-19		0.2353	[0.18-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
905	chr18	42072172	42072173	rs76537328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	18q12.3		rs76537328-G	0.240752	2E-12		0.0272491	[0.02-0.035] unit increase	Illumina [13478928] (imputed)	N
905	chr18	42072715	42072716	rs11082395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs11082395-T	0.14735	7E-44				Affymetrix, Illumina [24588908] (imputed)	N
905	chr18	42072715	42072716	rs11082395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs11082395-T	0.139022	1E-32				Affymetrix, Illumina [23114412] (imputed)	N
905	chr18	42072715	42072716	rs11082395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs11082395-T	0.144859	5E-16				Affymetrix, Illumina [24246363] (imputed)	N
906	chr18	42074521	42074522	rs7245273	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.3	LINC01478	rs7245273-A	0.3347	9E-12		0.2354	[0.17-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
906	chr18	42080719	42080720	rs11082396	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	18q12.3	SETBP1	rs11082396-C	0.13	1E-10		0.003	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
906	chr18	42081814	42081815	rs16978036	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	18q12.3	NR	rs16978036-T	0.1461	1E-11		0.0261988	[0.019-0.034] unit increase	Affymetrix [3505788] (imputed)	N
906	chr18	42081924	42081925	rs954794	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	18q12.3	NR	rs954794-A	0.1419	2E-9		0.265	[0.18-0.35] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
906	chr18	42084512	42084513	rs17841683	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	18q12.3	LINC01478	rs17841683-?	NR	8E-10		0.0306	[0.021-0.04] unit increase novel	Illumina [6108953] (imputed)	N
906	chr18	42084512	42084513	rs17841683	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	18q12.3	LINC01478	rs17841683-?	NR	5E-12		0.03424	[0.025-0.044] unit increase novel	Illumina [6108953] (imputed)	N
906	chr18	42085693	42085693	rs141236451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	18q12.3		rs141236451-CA	0.241497	9E-15		0.042011	[0.031-0.053] unit increase	Illumina [13467171] (imputed)	N
906	chr18	42085693	42085693	rs141236451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs141236451-CA	0.129143	3E-21		0.031228239	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
906	chr18	42085693	42085693	rs141236451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q12.3	CTC-782O7.1	rs141236451-CA	0.129137	4E-22		0.031941857	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
906	chr18	42090666	42090667	rs2048485	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	18q12.3	intergenic	rs2048485-?	NR	8E-6	(EA)	1.4	[NR]	Illumina [up to 531195]	N
906	chr18	42094510	42094511	rs1877312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18q12.3		rs1877312-?	NR	5E-11				NR [~ 8900000] (imputed)	N
906	chr18	42107661	42107662	rs77261872	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	18q12.3	NR	rs77261872-T	0.0886581	2E-16		0.0262	[0.02-0.032] unit increase	Affymetrix [23037915] (imputed)	N
906	chr18	42107661	42107662	rs77261872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	18q12.3	NR	rs77261872-C	0.75839	2E-10		0.037278	[0.026-0.049] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
906	chr18	42113150	42113151	rs16978075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	18q12.3	NR	rs16978075-T	0.758194	3E-10		0.026777	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
906	chr18	42113150	42113151	rs16978075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q12.3	Intergenic	rs16978075-T	0.8878	3E-8	(MTAG)	0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q12.3	Intergenic	rs16978075-T	0.8878	3E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	2E-10		0.03687931	[0.026-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	2E-10		0.03670617	[0.025-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	7E-11		0.03750357	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	1E-10		0.0372829	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	6E-10		0.03588241	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.1099	2E-12		0.04054926	[0.029-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113150	42113151	rs16978075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	18q12.3	CTC-782O7.1	rs16978075-C	0.11	4E-10		0.03611237	[0.025-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42113269	42113270	rs8093196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q12.3	CTC-782O7.1	rs8093196-G	NR	7E-9		0.0174786	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
906	chr18	42114955	42114957	rs147515585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	18q12.3		rs147515585-C	NR	1E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
906	chr18	42136962	42136963	rs35518690	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q12.3	CTC-782O7.1, RP11-456K23.1	rs35518690-?	NR	2E-8			[NR]	NR [NR] (imputed)	N
906	chr18	42136962	42136963	rs35518690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.3		rs35518690-?	NR	5E-10				NR [~ 8900000] (imputed)	N
906	chr18	42141976	42141977	rs12958173	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	18q12.3	SETBP1	rs12958173-C	0.699	8E-6	(EA, initial)	0.352	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
906	chr18	42141976	42141977	rs12958173	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	18q12.3	SETBP1	rs12958173-A	0.306	1E-13		0.3614	[0.27-0.46] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
906	chr18	42141976	42141977	rs12958173	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	18q12.3	SETBP1	rs12958173-A	0.306	6E-10		0.1789	[0.12-0.24] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
906	chr18	42143585	42143586	rs12964248	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q12.3		rs12964248-?	NR	1E-9		0.0146535	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
906	chr18	42149743	42149744	rs7232918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q12.3		rs7232918-A	0.817591	4E-10		0.018413069	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
906	chr18	42151260	42151261	rs8088824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q12.3		rs8088824-T	0.764887	1E-15		0.021712195	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
906	chr18	42151260	42151261	rs8088824	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	18q12.3	LINC01601, SETBP1	rs8088824-C	0.82	3E-23		0.056	NR unit decrease	Illumina [9591901] (imputed)	N
906	chr18	42151260	42151261	rs8088824	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q12.3	intergenic	rs8088824-T	0.7637	7E-14		0.03233302	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
906	chr18	42161642	42161643	rs1849209	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	18q12.3	NR	rs1849209-?	NR	4E-13				Affymetrix, Illumina [6211246] (imputed)	N
906	chr18	42184179	42184179	rs145682704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q12.3		rs145682704-GAGCTGTT	0.116853	2E-9		0.020864692	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
906	chr18	42188282	42188283	rs7232604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q12.3	RP11-456K23.1	rs7232604-T	NR	2E-10		0.0286801	[0.02-0.038] unit increase	Affymetrix [321016] (imputed)	N
906	chr18	42195184	42195185	rs78306018	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	18q12.3		rs78306018-A	NR	2E-6		1.3344008	[1.22-1.45]	Illumina [11600722] (imputed)	N
906	chr18	42202926	42202927	rs34039016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	18q12.3		rs34039016-A	NR	5E-10		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
906	chr18	42202926	42202927	rs34039016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18q12.3		rs34039016-A	NR	2E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
907	chr18	42210042	42210043	rs117867915	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	18q12.3	NR	rs117867915-C	NR	2E-6		0.5272	[0.31-0.74] SD units decrease	NR [10700000] (imputed)	N
907	chr18	42230171	42230172	rs4890487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q12.3	NR	rs4890487-A	0.400719	9E-10		0.013848443	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr18	42230171	42230172	rs4890487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q12.3		rs4890487-A	0.400736	1E-9		0.013837283	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr18	42230171	42230172	rs4890487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q12.3		rs4890487-?	NR	9E-13				NR [~ 8900000] (imputed)	N
907	chr18	42230456	42230457	rs2852747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q12.3		rs2852747-C	NR	2E-8		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
907	chr18	42252407	42252408	rs138775024	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q12.3	NR	rs138775024-?	NR	3E-6		0.0079447	[0.0046-0.0113] unit increase	Affymetrix [805426] (imputed)	N
907	chr18	42257299	42257300	rs2614993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q12.3	RP11-456K23.1	rs2614993-G	0.881391	9E-10		0.021857945	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr18	42260347	42260348	rs117763335	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	18q12.3	NR	rs117763335-C	NR	1E-8		1.0309278		NR [NR] (imputed)	N
907	chr18	42262868	42262869	rs2852772	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		SETBP1	rs2852772-A	0.17	8E-6				Illumina [1679420] (imputed)	N
907	chr18	42291323	42291327	rs10539959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q12.3	SETBP1	rs10539959-G	0.659396	9E-10		0.015016534	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr18	42299048	42299049	rs4084232	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	18q12.3	SETBP1	rs4084232-A	0.47	4E-7	(male)	0.09	[0.051-0.129] unit increase	Illumina [11973598] (imputed)	N
907	chr18	42304099	42304100	rs28550327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q12.3		rs28550327-?	NR	4E-8				NR [~ 8900000] (imputed)	N
907	chr18	42304099	42304100	rs28550327	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs28550327-G	0.262552	5E-11		0.023085	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
907	chr18	42306883	42306884	rs9949121	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	18q12.3	LOC101927921, MIR4319, SETBP1	rs9949121-?	NR	6E-6				Illumina [9143600] (imputed)	N
907	chr18	42313709	42313710	rs17782904	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	18q12.3	SETBP1	rs17782904-T	0.003	8E-8		45.95	[NR]	Affymetrix [559609]	N
907	chr18	42329075	42329076	rs17783459	22550155	Edelstein LC	2012-05-01	Circulation	Human genome-wide association and mouse knockout approaches identify platelet supervillin as an inhibitor of thrombus formation under shear stress.	Platelet thrombus formation	125 European ancestry individuals, 116 African American individuals	NA		SETBP1	rs17783459-?	NR	3E-6	(AA)	0.032067	[0.019-0.046] unit increase	Illumina [at least 620901]	N
908	chr18	42339101	42339102	rs12373476	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q12.3	SETBP1	rs12373476-C	NR	3E-8		0.0179735	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
908	chr18	42346955	42346956	rs9807656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18q12.3	SETBP1	rs9807656-T	0.8717	2E-8		0.0028	[0.0018-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
908	chr18	42346955	42346956	rs9807656	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	18q12.3	SETBP1	rs9807656-T	0.9023	2E-7		0.0034	[0.0022-0.0046] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
908	chr18	42356214	42356215	rs16978162	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q12.3	NR	rs16978162-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
908	chr18	42356214	42356215	rs16978162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q12.3		rs16978162-?	NR	4E-10				NR [~ 8900000] (imputed)	N
908	chr18	42361423	42361423	rs202209118	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	25,705 Japanese ancestry male cases, 82,774 Japanese ancestry male controls	NA	18q12.3		rs202209118-TCC	0.047008167	8E-9		1.1583176	[1.101941207-1.217578223]	Illumina [8919992] (imputed)	N
908	chr18	42361471	42361472	rs11876680	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	18q12.3	SETBP1	rs11876680-C	NR	4E-6		1.71	[NR] unit decrease	Affymetrix [NR] (imputed)	N
908	chr18	42361968	42361969	rs16978169	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	18q12.3	SETBP1	rs16978169-C	NR	5E-6		1.7	[NR] unit decrease	Affymetrix [NR] (imputed)	N
908	chr18	42361968	42361969	rs16978169	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q12.3	SLC14A2	rs16978169-?	NR	4E-6	(inositol)	0.33503073	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
908	chr18	42393819	42393820	rs9945779	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	18q12.3	SETBP1	rs9945779-A	0.8892	7E-7		1.1705326	[1.1-1.25]	Illumina [4946503] (imputed)	N
908	chr18	42399589	42399590	rs6507583	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	18q12.3		rs6507583-A	NR	1E-13		1.08	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
908	chr18	42399589	42399590	rs6507583	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.3	SETBP1	rs6507583-A	0.93	2E-12	(EA)	1.0869565	[1.04-1.12] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
908	chr18	42399589	42399590	rs6507583	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	18q12.3	SETBP1	rs6507583-A	0.93	1E-6		1.098901		Affymetrix, Illumina [~ 14000000] (imputed)	N
908	chr18	42399589	42399590	rs6507583	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	18q12.3	SETBP1	rs6507583-A	0.93	3E-8		1.098901	[1.05-1.14]	Affymetrix, Illumina [~ 11600000] (imputed)	N
908	chr18	42411802	42411803	rs9954058	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.3	NR	rs9954058-C	0.0721	3E-13	(EA)	0.0891	[0.065-0.113] unit decrease	Illumina [~ 11800000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	9E-10	(-38 ms)	0.0352318	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	7E-11	(-26 ms)	0.0368672	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	5E-16	(-34 ms)	0.0460189	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	3E-16	(-28 ms)	0.0457913	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	2E-16	(-32 ms)	0.0464306	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	1E-17	(-30 ms)	0.0480042	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42424593	42424594	rs1126225	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q12.3	SETBP1	rs1126225-C	0.59977	1E-14	(-36 ms)	0.0443511	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
908	chr18	42431243	42431244	rs4890489	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	18q12.3	SETBP1	rs4890489-A	0.32	2E-8		0.97	[0.64-1.30] unit increase	Affymetrix [2100000] (imputed)	N
908	chr18	42436651	42436652	rs10853525	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	18q12.3	SETBP1	rs10853525-?	NR	1E-14	(EA)	0.46	[0.34-0.58] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
908	chr18	42437267	42437268	rs4890490	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	18q12.3	SETBP1	rs4890490-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
908	chr18	42437313	42437314	rs614797	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	18q12.3	SETBP1	rs614797-T	0.6411	4E-6		0.0312	[0.018-0.045] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
908	chr18	42437313	42437314	rs614797	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	18q12.3	SETBP1	rs614797-T	0.6411	6E-7		0.0334	[0.02-0.047] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
908	chr18	42437313	42437314	rs614797	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	18q12.3	SETBP1	rs614797-T	0.6411	2E-6		0.031	[0.018-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
908	chr18	42439078	42439079	rs586125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q12.3	SETBP1	rs586125-G	NR	3E-9		0.0209007	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
908	chr18	42439885	42439886	rs991014	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	18q12.3	NR	rs991014-?	NR	2E-14	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
908	chr18	42439885	42439886	rs991014	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	18q12.3	SETBP1	rs991014-T	0.42	6E-10	(European)	0.42	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
908	chr18	42439885	42439886	rs991014	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	18q12.3	SETBP1	rs991014-T		1E-12		0.43	[0.31-0.55] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
908	chr18	42440537	42440538	rs1276250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q12.3	SETBP1	rs1276250-T	NR	8E-9		0.02548	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
908	chr18	42440537	42440538	rs1276250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q12.3	SETBP1	rs1276250-T	NR	8E-9		0.0254878	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
908	chr18	42440537	42440538	rs1276250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q12.3	NR	rs1276250-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
908	chr18	42440537	42440538	rs1276250	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q12.3	SETBP1	rs1276250-C	NR	3E-8		0.0535618	NR unit increase	NR [NR] (imputed)	N
908	chr18	42441442	42441443	rs11661654	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	18q12.3	SETBP1	rs11661654-T	0.415	2E-11		0.598	[0.42-0.77] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
908	chr18	42442138	42442139	rs684329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q12.3		rs684329-?	NR	8E-12				NR [~ 8900000] (imputed)	N
908	chr18	42442138	42442139	rs684329	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs684329-C	0.129048	1E-15		0.0370173	[0.028-0.046] unit decrease	NR [19129689] (imputed)	N
908	chr18	42456652	42456653	rs663651	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	18q12.3	SETBP1	rs663651-G	0.435449	4E-33		0.426895	[0.36-0.5] ms decrease	Illumina [162199]	N
908	chr18	42456652	42456653	rs663651	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	18q12.3	SETBP1	rs663651-G	0.444127770038686	3E-17		0.45702308	[0.35-0.56] ms decrease	Illumina [213295]	N
909	chr18	42485448	42485449	rs62092684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q12.3	SETBP1	rs62092684-A	0.0101	6E-6		0.1681	[0.096-0.241] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
909	chr18	42485448	42485449	rs62092684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q12.3	SETBP1	rs62092684-A	0.0101	6E-6		0.1681	[0.096-0.241] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
909	chr18	42549256	42549257	rs16978240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q12.3		rs16978240-?	NR	9E-9				NR [~ 8900000] (imputed)	N
909	chr18	42549477	42549478	rs11082416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.3		rs11082416-?	NR	4E-9				NR [~ 8900000] (imputed)	N
909	chr18	42575660	42575661	rs11664848	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs11664848-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
909	chr18	42594279	42594280	rs34233878	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q12.3	SETBP1	rs34233878-T	0.90128	1E-10		0.0201714	[0.014-0.026] unit increase	NR [13737936] (imputed)	N
909	chr18	42595075	42595076	rs7233512	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18q12.3		rs7233512-G	0.71	3E-16				NR [NR] (imputed)	N
909	chr18	42595075	42595076	rs7233512	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18q12.3		rs7233512-G	0.71	8E-11		0.011	% increase	NR [NR] (imputed)	N
909	chr18	42595075	42595076	rs7233512	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs7233512-?	NR	4E-11				NR [~ 8900000] (imputed)	N
909	chr18	42595995	42595996	rs11874040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.3		rs11874040-?	NR	1E-13				NR [~ 8900000] (imputed)	N
909	chr18	42595995	42595996	rs11874040	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q12.3	NA	rs11874040-A	0.7144	2E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
909	chr18	42597977	42597978	rs7230240	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q12.3	SETBP1	rs7230240-C	0.705419	4E-10		0.00939729	[0.0064-0.0123] unit increase	Affymetrix [12370749]	N
910	chr18	42606090	42606091	rs9967367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q12.3		rs9967367-T	NR	8E-12		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
910	chr18	42606090	42606091	rs9967367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q12.3	SETBP1	rs9967367-T	0.29423	3E-12		0.017342273	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
910	chr18	42606090	42606091	rs9967367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q12.3	SETBP1	rs9967367-T	0.294232	9E-12		0.016891785	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
910	chr18	42606090	42606091	rs9967367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q12.3	SETBP1	rs9967367-T	0.294265	6E-13		0.017734837	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
910	chr18	42606090	42606091	rs9967367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q12.3	SETBP1	rs9967367-T	0.294268	2E-12		0.017431028	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
910	chr18	42633730	42633730	rs533213634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	18q12.3	SETBP1	rs533213634-AT	NR	3E-9		0.0182354	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
910	chr18	42642164	42642165	rs2032231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q12.3		rs2032231-?	NR	4E-11				NR [~ 8900000] (imputed)	N
910	chr18	42658642	42658643	rs72898831	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q12.3	NR	rs72898831-G	0.155	2E-17		0.0127352	[0.0098-0.0157] unit decrease	NR [9732723] (imputed)	N
910	chr18	42658642	42658643	rs72898831	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q12.3	NR	rs72898831-G	0.155	4E-12		0.024415854	[0.018-0.031] unit decrease	NR [~ 10000000] (imputed)	N
910	chr18	42669424	42669425	rs11876432	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q12.3	SLC14A2	rs11876432-C	0.7514	7E-9		0.013449244	[0.0089-0.018] unit increase	Affymetrix [11514654] (imputed)	N
910	chr18	42669891	42669892	rs35398628	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q12.3		rs35398628-T	0.758	3E-14		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
910	chr18	42671635	42671636	rs62090515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs62090515-A	0.3605	7E-10		0.009	[0.0061-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
910	chr18	42671635	42671636	rs62090515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs62090515-A	0.3605	3E-12	(MTAG)	0.0095	[0.0068-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
910	chr18	42676927	42676928	rs12326164	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q12.3	SETBP1	rs12326164-G	NR	4E-8		0.0391557	NR unit decrease	NR [NR] (imputed)	N
910	chr18	42703665	42703666	rs1450807	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs1450807-C	0.27025	5E-11		0.0234217	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
911	chr18	42737283	42737284	rs8095987	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q12.3	NR	rs8095987-?	NR	1E-7		5.306	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
911	chr18	42738961	42738962	rs72902636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	18q12.3	RP11-846C15.2	rs72902636-T	NR	2E-9		0.0229345	[0.015-0.03] unit increase	Affymetrix [321788] (imputed)	N
911	chr18	42739508	42739509	rs72902641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q12.3	RP11-846C15.2	rs72902641-C	NR	3E-8		0.0203395	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
911	chr18	42739508	42739509	rs72902641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q12.3	RP11-846C15.2	rs72902641-C	NR	5E-8		0.0199724	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
911	chr18	42741409	42741410	rs1026186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	18q12.3	RP11-846C15.2	rs1026186-A	NR	1E-8		0.0175397	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
911	chr18	42748179	42748180	rs6507603	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q12.3	NR	rs6507603-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
911	chr18	42749455	42749456	rs17739187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q12.3		rs17739187-?	NR	2E-9				NR [~ 8900000] (imputed)	N
911	chr18	42752376	42752377	rs11082430	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18q12.3	NR	rs11082430-C	0.7379	2E-9		0.0125	[0.0084-0.0166] unit increase	NR [~ 27400000] (imputed)	N
911	chr18	42754467	42754468	rs11877152	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18q12.3	NR	rs11877152-C	0.107	3E-10		0.0149381	[0.01-0.02] unit increase	NR [9732723] (imputed)	N
911	chr18	42777063	42777064	rs10163551	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	18q12.3	NR	rs10163551-T	0.3	8E-11		0.0129	[0.0089-0.0169] unit increase	NR [NR]	N
911	chr18	42777477	42777478	rs269972	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	18q12.3	NA	rs269972-T		1E-19		0.0217297	[0.017-0.026] unit decrease	Illumina [13288253] (imputed)	N
911	chr18	42779106	42779107	rs10438961	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	18q12.3	SLC14A2	rs10438961-T	0.7295	2E-8		0.021	[0.014-0.028] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
911	chr18	42779106	42779107	rs10438961	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	18q12.3	SLC14A2	rs10438961-T	0.6951	2E-6		0.019672	[0.012-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
911	chr18	42782951	42782952	rs9807214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18q12.3		rs9807214-A	NR	1E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
911	chr18	42784048	42784049	rs921385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q12.3		rs921385-T	NR	2E-14		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
911	chr18	42785996	42785997	rs269985	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	18q12.3	NR	rs269985-G		1E-6				Illumina [458865]	N
911	chr18	42785996	42785997	rs269985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q12.3	Intergenic	rs269985-T	0.1781	3E-8	(MTAG)	0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
911	chr18	42800147	42800148	rs10502861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q12.3		rs10502861-?	NR	2E-56				NR [~ 8900000] (imputed)	N
911	chr18	42800147	42800148	rs10502861	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q12.3	NR	rs10502861-T	NR	2E-26		0.07	NR unit decrease	NR [NR] (imputed)	N
911	chr18	42800147	42800148	rs10502861	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	18q12.3	SETBP1	rs10502861-C	0.775	3E-9		1.28	[1.18-1.39]	Affymetrix, Illumina [2391230] (imputed)	N
911	chr18	42803330	42803331	rs1381556	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs1381556-C	0.279444	7E-81		0.0667638	[0.06-0.074] unit decrease	NR [19129689] (imputed)	N
911	chr18	42804524	42804525	rs12606816	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	18q12.3		rs12606816-G	0.27	9E-21		0.21	[0.17-0.25] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
911	chr18	42808058	42808059	rs34800162	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q12.3	NR	rs34800162-G	NR	2E-26		0.07	NR unit decrease	NR [NR] (imputed)	N
911	chr18	42808058	42808059	rs34800162	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	18q12.3	SLC14A2	rs34800162-?	NR	8E-15		1.217	[1.158-1.278]	Illumina [13436641] (imputed)	N
911	chr18	42811726	42811727	rs8090126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q12.3	SLC14A2	rs8090126-C	0.193656	1E-13		0.020796226	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
911	chr18	42811726	42811727	rs8090126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q12.3	SLC14A2	rs8090126-C	0.193674	1E-11		0.019096516	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
911	chr18	42811726	42811727	rs8090126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q12.3	SLC14A2	rs8090126-C	0.19366	2E-14		0.02138863	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
911	chr18	42811726	42811727	rs8090126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q12.3		rs8090126-?	NR	1E-21				NR [~ 8900000] (imputed)	N
911	chr18	42814155	42814156	rs8085664	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	18q12.3	SETBP1	rs8085664-C	NR	8E-25		0.160868	[0.13-0.19] unit decrease	Affymetrix [27512692] (imputed)	N
911	chr18	42814155	42814156	rs8085664	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q12.3	SLC14A2	rs8085664-A	NR	3E-27		0.0743733	NR unit decrease	NR [NR] (imputed)	N
911	chr18	42815789	42815789	rs544802698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q12.3	NR	rs544802698-I	0.165893	4E-16		0.022451	[0.017-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
911	chr18	42815796	42815797	rs556651803	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs556651803-T	0.15206	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
911	chr18	42824448	42824449	rs10853531	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	18q12.3	SLC14A2	rs10853531-A	0.1996	6E-12		6.882	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
911	chr18	42824448	42824449	rs10853531	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	18q12.3	SLC14A2	rs10853531-G	0.8	8E-6	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
911	chr18	42824448	42824449	rs10853531	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	18q12.3	SLC14A2	rs10853531-G	0.8	3E-8				Affymetrix, Illumina [up to 7331415] (imputed)	N
911	chr18	42827897	42827898	rs9807668	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q12.3	SLC14A2	rs9807668-T	0.0946	5E-7		0.0201	[0.012-0.028] unit increase	Affymetrix [19819130] (imputed)	N
911	chr18	42827897	42827898	rs9807668	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q12.3	SLC14A2	rs9807668-T	0.0946	5E-10		0.0252	[0.017-0.033] unit increase	Affymetrix [19819130] (imputed)	N
911	chr18	42827897	42827898	rs9807668	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q12.3	SLC14A2	rs9807668-T	0.0946	1E-13		0.0294	[0.022-0.037] unit increase	Affymetrix [19819130] (imputed)	N
911	chr18	42829029	42829030	rs62092157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q12.3		rs62092157-?	NR	2E-19				NR [~ 8900000] (imputed)	N
911	chr18	42839274	42839275	rs117354958	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	18q12.3	SLC14A2	rs117354958-G	0.024	4E-8		1.32	[0.85-1.79] unit increase	Illumina [9469131] (imputed)	N
911	chr18	42839274	42839275	rs117354958	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	18q12.3	SLC14A2	rs117354958-G	0.0241	5E-7		0.2671263	[0.16-0.37] unit increase	Illumina [9469131] (imputed)	N
911	chr18	42855599	42855600	rs62093664	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs62093664-C	NR	4E-10		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
912	chr18	42865209	42865210	rs11082438	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	18q12.3	SLC14A2	rs11082438-G	0.936	4E-7		1.33	[1.19-1.48]	Illumina [up to 21554489]	N
912	chr18	42868374	42868375	rs11662289	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	18q12.3	NR	rs11662289-?	NR	8E-7		0.122264	[0.074-0.171] unit decrease	NR [13958389] (imputed)	N
912	chr18	42875826	42875827	rs12326462	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	18q12.3	NR	rs12326462-?	NR	7E-6		0.098044	[0.055-0.141] unit decrease	NR [13958389] (imputed)	N
912	chr18	42876698	42876699	rs72906613	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	18q12.3	SLC14A2	rs72906613-C	0.12	1E-6		1.25	[0.74-1.76] g/day increase	Affymetrix [10353649] (imputed)	N
912	chr18	42879716	42879717	rs8093563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.3		rs8093563-?	NR	7E-8				NR [~ 8900000] (imputed)	N
912	chr18	42884025	42884026	rs12455117	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	18q12.3		rs12455117-T	0.302885169	4E-8		0.8866379	[0.849420099-0.925486452]	Illumina [8919992] (imputed)	N
912	chr18	42884025	42884026	rs12455117	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	18q12.3		rs12455117-A	0.68	2E-8	(conditional)	1.09	[1.06-1.12]	Affymetrix, Illumina [NR] (imputed)	N
912	chr18	42885108	42885109	rs58696100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q12.3	Intergenic	rs58696100-T	0.8578	7E-9	(MTAG)	0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
912	chr18	42885817	42885818	rs11661806	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18q12.3	NR	rs11661806-C		3E-13		0.12	[0.081-0.159] unit increase	NR [NR]	N
912	chr18	42886235	42886236	rs16978339	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q12.3	SETBP1, SLC14A2	rs16978339-?		3E-36				Affymetrix, Illumina [NR] (imputed)	N
912	chr18	42888796	42888797	rs9952980	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q12.3	NR	rs9952980-C	0.3504	2E-13	(EA)	0.0478	[0.035-0.061] unit decrease	Illumina [~ 11800000] (imputed)	N
912	chr18	42889016	42889017	rs11082442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	18q12.3		rs11082442-G	NR	3E-11		0.0709	[0.05-0.092] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
912	chr18	42894669	42894670	rs116658260	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	18q12.3		rs116658260-G	0.98539	1E-6		0.0604535	[0.036-0.085] unit decrease	Illumina [13900000] (imputed)	N
912	chr18	42896816	42896817	rs1462151	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q12.3	SLC14A2	rs1462151-G	0.848794	9E-10		0.0158799	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
912	chr18	42896816	42896817	rs1462151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q12.3		rs1462151-?	NR	5E-12				NR [~ 8900000] (imputed)	N
912	chr18	42900891	42900892	rs17743054	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	18q12.3	NR	rs17743054-?	NR	2E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
912	chr18	42900891	42900892	rs17743054	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	18q12.3	NR	rs17743054-T	0.72	2E-10		1.0416667	[1.03-1.05]	Illumina [~ 10800000] (imputed)	N
912	chr18	42907549	42907550	rs11659248	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q12.3		rs11659248-?	NR	2E-9		0.0163367	[0.011-0.022] unit increase	Affymetrix [20259828] (imputed)	N
912	chr18	42908725	42908726	rs11663678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q12.3		rs11663678-T	0.8842	3E-8		0.0121	[0.0078-0.0164] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
912	chr18	42919687	42919688	rs79284447	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	18q12.3		rs79284447-C	0.01656	6E-6		2.679	[1.746-4.111]	Affymetrix [7975321] (imputed)	N
912	chr18	42919687	42919688	rs79284447	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	18q12.3		rs79284447-C	0.01656	2E-6		2.563	[1.738-3.778]	Affymetrix [7975321] (imputed)	N
912	chr18	42920562	42920563	rs79804212	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	18q12.3		rs79804212-?	NR	4E-6		0.3137		Illumina [5932083] (imputed)	N
912	chr18	42932113	42932114	rs11659929	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	18q12.3		rs11659929-?	NR	2E-6		4.77	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
912	chr18	42932113	42932114	rs11659929	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	18q12.3		rs11659929-?	NR	2E-6		4.75	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
912	chr18	42940498	42940499	rs16978350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q12.3		rs16978350-T	NR	8E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
912	chr18	42940498	42940499	rs16978350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q12.3	NA	rs16978350-T	0.2763	5E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
912	chr18	42945916	42945917	rs16978353	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	18q12.3		rs16978353-?	NR	2E-6		0.04	[0.022-0.058] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
912	chr18	42948993	42948994	rs2247326	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	18q12.3	NR	rs2247326-A		1E-6				Illumina [458865]	N
912	chr18	42950628	42950629	rs10438964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q12.3	NR	rs10438964-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
912	chr18	42950628	42950629	rs10438964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q12.3		rs10438964-?	NR	7E-10				NR [~ 8900000] (imputed)	N
912	chr18	42956671	42956672	rs2243803	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	18q12.3	SLC14A2	rs2243803-A	0.40	3E-7		2.0	[1.22-2.78] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
912	chr18	42957841	42957842	rs1462152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs1462152-C	NR	4E-11		0.0453	[0.032-0.059] unit increase	Affymetrix [9000000] (imputed)	N
912	chr18	42960683	42960684	rs7229439	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	18q12.3	NR	rs7229439-T	NR	2E-6		2660.0	unit increase	Affymetrix, Perlegen [1785543] (imputed)	N
912	chr18	42968533	42968534	rs73431975	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	18q12.3	SLC14A2	rs73431975-?		2E-6		0.573	[NR] unit decrease	Illumina [5970354] (imputed)	N
913	chr18	43000392	43000393	rs75672398	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs75672398-T	NR	5E-9		0.0373	[0.025-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr18	43013566	43013567	rs4358031	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q12.3	SLC14A2, LOC101927980	rs4358031-?		5E-7				Illumina [4322238] (imputed)	N
913	chr18	43052473	43052474	rs113537788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	18q12.3		rs113537788-G	NR	7E-9		0.1802	[0.12-0.24] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
913	chr18	43052473	43052474	rs113537788	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	18q12.3	OR2K2	rs113537788-G	0.0180989	7E-9		0.18015672	[0.12-0.24] unit increase	Affymetrix [7288503] (imputed)	N
913	chr18	43077560	43077561	rs2612539	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q12.3	NR	rs2612539-?	NR	1E-7				Affymetrix [NR]	N
913	chr18	43084184	43084185	rs2612581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	18q12.3		rs2612581-G	NR	9E-15		0.0215	[0.016-0.027] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
913	chr18	43084184	43084185	rs2612581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	18q12.3		rs2612581-G	NR	2E-13		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
913	chr18	43084184	43084185	rs2612581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs2612581-G	0.895185	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
913	chr18	43084184	43084185	rs2612581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	18q12.3	NR	rs2612581-G	0.900176	7E-16		0.024906	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
913	chr18	43085919	43085920	rs2612585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q12.3	RP11-749H17.1, SLC14A2	rs2612585-G	0.9019225	5E-11		0.024505727	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
913	chr18	43089643	43089644	rs35277578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs35277578-A	0.889847	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
913	chr18	43089643	43089644	rs35277578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18q12.3	NR	rs35277578-A	0.899646	4E-16		0.025144	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
913	chr18	43096235	43096236	rs2193635	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q12.3	SLC14A2	rs2193635-C		2E-8		0.274	unit decrease	Affymetrix [at least 2696785] (imputed)	N
913	chr18	43096235	43096236	rs2193635	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q12.3	SLC14A2	rs2193635-C		3E-12		0.311	unit decrease	Affymetrix [at least 2696785] (imputed)	N
913	chr18	43096235	43096236	rs2193635	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q12.3	SLC14A2	rs2193635-C		1E-12	(EA)	0.367	unit decrease	Affymetrix [at least 2696785] (imputed)	N
913	chr18	43096235	43096236	rs2193635	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q12.3	SLC14A2	rs2193635-C		9E-24		0.324	unit decrease	Affymetrix [at least 2696785] (imputed)	N
913	chr18	43097749	43097750	rs7236548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18q12.3		rs7236548-A	NR	3E-30		0.0252	[0.021-0.03] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
913	chr18	43097749	43097750	rs7236548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q12.3		rs7236548-?	NR	1E-16				NR [~ 8900000] (imputed)	N
913	chr18	43097749	43097750	rs7236548	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.3	BC038429	rs7236548-A	0.219	3E-25		0.3134	[0.25-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
913	chr18	43097749	43097750	rs7236548	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	18q12.3	SLC14A2	rs7236548-A	0.18	2E-18		0.352	[0.27-0.43] unit increase	Affymetrix [~ 9800000] (imputed)	N
913	chr18	43098274	43098275	rs2543029	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q12.3	BC038429	rs2543029-C	0.633	2E-15		0.2381	[0.18-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
913	chr18	43114791	43114792	rs2705366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q12.3		rs2705366-?	NR	6E-9				NR [~ 8900000] (imputed)	N
913	chr18	43114832	43114833	rs34793310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q12.3	RP11-749H17.2, SLC14A2	rs34793310-C	0.0881960000000001	2E-12		0.027567307	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr18	43145660	43145661	rs2852306	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	18q12.3	SLC14A2	rs2852306-G	NR	5E-6		1.546	NR	Illumina [up to 4495750] (imputed)	N
914	chr18	43150993	43150994	rs74951270	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs74951270-T	0.081828	2E-9		0.0343655	[0.023-0.046] unit decrease	NR [19129689] (imputed)	N
914	chr18	43153948	43153949	rs10502868	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs10502868-C	0.0723553	1E-43		0.0834435	[0.072-0.095] unit increase	NR [19129689] (imputed)	N
914	chr18	43153948	43153949	rs10502868	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	18q12.3	SLC14A2	rs10502868-G	0.08	7E-6	(albumin)	0.04	[0.21-0.51] g/L decrease	Illumina [316730]	N
914	chr18	43161108	43161109	rs8095040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q12.3		rs8095040-?	NR	1E-22				NR [~ 8900000] (imputed)	N
914	chr18	43170677	43170678	rs72906315	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q12.3	NR	rs72906315-T	0.126702	3E-10		0.029826	[0.021-0.039] unit decrease	NR [19129689] (imputed)	N
914	chr18	43187129	43187130	rs7227483	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	18q12.3	SLC14A2	rs7227483-G	0.80	7E-18		0.0083	[0.0063-0.0103] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
914	chr18	43202403	43202404	rs7232775	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	18q12.3	SLC14A2	rs7232775-C	0.20	8E-14	(BUN)	0.0148	[0.011-0.019] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
914	chr18	43206984	43206985	rs1484873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18q12.3		rs1484873-G	NR	6E-66		0.0562	[0.05-0.063] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
914	chr18	43206984	43206985	rs1484873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	18q12.3		rs1484873-G	0.808838	5E-34		0.0518873	[0.044-0.06] unit increase	Illumina [13478792] (imputed)	N
914	chr18	43206984	43206985	rs1484873	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs1484873-G	NR	9E-35		0.0645	[0.054-0.075] unit increase	Affymetrix [9000000] (imputed)	N
914	chr18	43206984	43206985	rs1484873	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	18q12.3	SLC14A2	rs1484873-A	NR	4E-6		0.473	[0.27-0.68] unit decrease	Illumina [9290362] (imputed)	N
914	chr18	43206984	43206985	rs1484873	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	18q12.3	SLC14A2	rs1484873-A	0.1351	4E-49		0.0169	[0.015-0.019] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
914	chr18	43212937	43212938	rs4890293	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	18q12.3	SLC14A2	rs4890293-?	NR	6E-37		0.05539	[0.047-0.064] unit increase novel	Illumina [6108953] (imputed)	N
914	chr18	43216009	43216010	rs12959849	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	18q12.3	NR	rs12959849-T	0.91	5E-11		0.021	[0.015-0.027] unit decrease	NR [NR]	N
914	chr18	43220330	43220331	rs8091629	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	18q12.3	NR	rs8091629-G	0.1	2E-6		1.8518518	[1.60-2.11]	NR [up to 6398204] (imputed)	N
914	chr18	43229253	43229254	rs8092589	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	18q12.3	NR	rs8092589-A	NR	9E-6		0.4724	NR unit increase	Illumina [4533042] (imputed)	N
914	chr18	43231621	43231622	rs4890568	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	18q12.3	SLC14A2	rs4890568-G	0.24	2E-10	(BUN)	0.087	[0.06-0.114] unit decrease	Illumina [561583]	N
914	chr18	43236137	43236138	rs923074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs923074-C	NR	3E-19		0.028	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
915	chr18	43262407	43262408	rs41301139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs41301139-A	NR	7E-61		0.1526	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
915	chr18	43303088	43303089	rs10460032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q12.3	RP11-116O18.3	rs10460032-G	0.833368	2E-18		0.026573455	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr18	43303088	43303089	rs10460032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q12.3	RP11-116O18.3	rs10460032-G	0.833393	1E-10		0.020717103	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
915	chr18	43303088	43303089	rs10460032	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	18q12.3	RP11-116O18.3	rs10460032-A	0.1589	2E-6		0.081	[0.048-0.114] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
915	chr18	43303833	43303834	rs1484878	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	18q12.3	NR	rs1484878-?	NR	1E-13		0.03225	[0.024-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
915	chr18	43304181	43304182	rs3819179	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q12.3	SLC14A1	rs3819179-A	0.066344	6E-18		0.04172062	[0.032-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr18	43309910	43309911	rs17674580	21750109	Rafnar T	2011-07-12	Hum Mol Genet	European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene.	Bladder cancer	2,234 European ancestry cases, 41,603 European ancestry controls	3,371 European ancestry cases, 10,261 European ancestry controls, 269 Iranian ancestry cases, 246 Iranian ancestry controls	18q12.3	SLC14A1	rs17674580-T	0.33	8E-11		1.17	[1.11-1.22]	Illumina [5340737] (imputed)	N
915	chr18	43310414	43310415	rs2298720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	18q12.3		rs2298720-A	NR	1E-45		0.0415	[0.036-0.047] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
915	chr18	43310414	43310415	rs2298720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	18q12.3		rs2298720-A	0.386974	2E-60		0.060735	[0.053-0.068] unit increase	Illumina [13477028] (imputed)	N
915	chr18	43310414	43310415	rs2298720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q12.3	NR	rs2298720-A	0.135532	2E-46				Affymetrix, Illumina [21126107] (imputed)	N
915	chr18	43310414	43310415	rs2298720	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	18q12.3	NR	rs2298720-G	0.612407	2E-48		0.059659	[0.052-0.068] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
915	chr18	43314961	43314962	rs16978474	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	18q12.3	SLC14A1	rs16978474-?	NR	3E-48		0.06363	[0.055-0.072] unit increase novel	Illumina [6108953] (imputed)	N
915	chr18	43316900	43316901	rs7237102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q12.3	RP11-116O18.3, SLC14A1	rs7237102-T	0.066137	3E-16		0.0367549	[0.028-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr18	43316900	43316901	rs7237102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q12.3	RP11-116O18.3, SLC14A1	rs7237102-T	0.066139	5E-18		0.039020322	[0.03-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr18	43316965	43316966	rs7238033	21824976	Garcia-Closas M	2011-08-08	Hum Mol Genet	A genome-wide association study of bladder cancer identifies a new susceptibility locus within SLC14A1, a urea transporter gene on chromosome 18q12.3.	Bladder cancer	4,501 European ancestry cases, 6,076 European ancestry controls	1,382 European ancestry cases, 2,201 European ancestry controls	18q12.3	SLC14A1	rs7238033-?		9E-9		1.2	[1.13-1.28]	Illumina [555912]	N
915	chr18	43317281	43317282	rs10775480	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	18q12.3	SLC14A2	rs10775480-T	0.43	6E-8		1.13	[1.08-1.19]	Illumina [462190]	N
915	chr18	43317898	43317899	rs12608098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	18q12.3		rs12608098-T	0.387162	5E-9		0.0187489	[0.012-0.025] unit decrease	Illumina [13478961] (imputed)	N
915	chr18	43317898	43317899	rs12608098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	18q12.3	NR	rs12608098-C	0.612814	5E-11		0.025186	[0.018-0.033] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
915	chr18	43340627	43340628	rs72916230	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q12.3		rs72916230-?	NR	1E-12				NR [~ 8900000] (imputed)	N
915	chr18	43359318	43359319	rs140272419	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	18q12.3		rs140272419-A	0.1009	4E-6		2.069	[1.519-2.82]	Affymetrix [7975321] (imputed)	N
915	chr18	43362680	43362681	rs16978499	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q12.3	SLC14A1	rs16978499-C	0.001946	3E-6	(EA)			Illumina [4404269] (imputed)	N
916	chr18	43405182	43405183	rs7245281	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	18q12.3	SIGLEC15, EPG5, SLC14A1, SLC14A2	rs7245281-A	0.196519	3E-7	(men)	0.32247	[0.2-0.44] % decrease	Affymetrix [532676] (imputed)	N
916	chr18	43405182	43405183	rs7245281	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	18q12.3	SIGLEC15, EPG5, SLC14A1, SLC14A2	rs7245281-A	0.196519	5E-6	(men)	0.268195	[0.15-0.38] mm2 decrease	Affymetrix [532676] (imputed)	N
916	chr18	43411858	43411859	rs11877682	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	18q12.3		rs11877682-T	NR	5E-8		5.032713	NR	Affymetrix [7846216] (imputed)	N
916	chr18	43412627	43412628	rs11082490	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	18q12.3		rs11082490-?	NR	2E-6	(MLM)	0.2858119	[0.17-0.4] unit increase	Illumina [~ 9000000] (imputed)	N
916	chr18	43412627	43412628	rs11082490	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	18q12.3		rs11082490-?	NR	5E-6	(MLM)	0.2760101	[0.16-0.39] unit increase	Illumina [~ 9000000] (imputed)	N
916	chr18	43444885	43444886	rs34945724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q12.3	NR	rs34945724-C	NR	4E-10		0.0293	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
916	chr18	43460088	43460089	rs148241618	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	18q12.3		rs148241618-A	0.02252	9E-6		2.447	[1.648-3.634]	Affymetrix [7975321] (imputed)	N
916	chr18	43460088	43460089	rs148241618	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	18q12.3		rs148241618-A	0.02252	1E-6		2.402	[1.681-3.431]	Affymetrix [7975321] (imputed)	N
916	chr18	43472577	43472578	rs192186653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q12.3		rs192186653-?	NR	2E-10				NR [~ 8900000] (imputed)	N
916	chr18	43502727	43502728	rs11082498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.1		rs11082498-?	NR	3E-10				NR [~ 8900000] (imputed)	N
917	chr18	43531186	43531186	rs1241467877	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.1	NR	rs1241467877-T	0.01045	2E-9	(NME8)	0.06672	NR unit increase	Illumina [1671387] (imputed)	N
917	chr18	43535153	43535154	rs201067154	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	18q21.1	EPG5	rs201067154-A	0.001961	2E-6		8.699	2.963-25.54	Illumina [164395]	N
917	chr18	43536259	43536260	rs9964220	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	18q21.1		rs9964220-?	NR	2E-20				NR [~ 8900000] (imputed)	N
917	chr18	43551012	43551013	rs8098701	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	18q21.1	intergenic	rs8098701-T	0.07	2E-6		2.41	[1.68-3.47]	NR [~ 38000000] (imputed)	N
917	chr18	43562200	43562201	rs57259994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.1	PSTPIP2	rs57259994-C	0.13273	3E-9		0.019794708	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
917	chr18	43562200	43562201	rs57259994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q21.1	PSTPIP2	rs57259994-C	0.132735	3E-10		0.020953454	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
917	chr18	43566961	43566962	rs7244810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.1		rs7244810-C	NR	7E-14		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
917	chr18	43566961	43566962	rs7244810	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs7244810-C	0.20054	7E-16				Affymetrix, Illumina [24588908] (imputed)	N
917	chr18	43592312	43592313	rs3886769	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		18q21.1	PSTPIP2	rs3886769-A	0.044	2E-6		0.88	[0.53-1.23] unit increase	Illumina [640625] (imputed)	N
917	chr18	43637242	43637243	rs9966603	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	18q21.1	NR	rs9966603-?		7E-6		2.97	[NR]	Illumina [NR] (imputed)	N
918	chr18	43658752	43658753	rs145410643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.1	NR	rs145410643-C	0.01045	4E-9	(HMOX1)	0.02833	NR unit increase	Illumina [1671387] (imputed)	N
918	chr18	43665559	43665560	rs12457342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.1		rs12457342-?	NR	2E-12				NR [~ 8900000] (imputed)	N
918	chr18	43688575	43688576	rs11874712	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	18q21.1	intergenic	rs11874712-A	0.41	2E-7		1.15	[1.09-1.20]	Affymetrix, Illumina [~ 2300000] (imputed)	N
918	chr18	43719681	43719682	rs11082512	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	18q21.1	intergenic	rs11082512-A	0.735	3E-12		0.0275619	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
918	chr18	43734408	43734409	rs6507670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	18q21.1		rs6507670-G	0.467925	7E-31		0.0421364	[0.035-0.049] unit increase	Illumina [13476299] (imputed)	N
918	chr18	43736483	43736484	rs7236687	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSNK2A1;CSNK2B	5,366 Icelandic ancestry individuals	NA	18q21.1		rs7236687-G	0.3026	1E-17		0.175412	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
918	chr18	43739729	43739730	rs6507676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs6507676-T	0.724014	5E-364				Affymetrix, Illumina [22063850] (imputed)	N
918	chr18	43747152	43747153	rs11082513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.1		rs11082513-?	NR	1E-300				NR [~ 8900000] (imputed)	N
918	chr18	43747152	43747153	rs11082513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.1		rs11082513-?	NR	1E-8				NR [~ 8900000] (imputed)	N
918	chr18	43747389	43747390	rs13381496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.1		rs13381496-C	NR	4E-135		0.0532	[0.049-0.057] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
918	chr18	43752220	43752221	rs113516067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	18q21.1		rs113516067-C	0.490816	1E-30		0.0413291	[0.034-0.048] unit increase	Illumina [13476266] (imputed)	N
918	chr18	43767065	43767066	rs6507681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q21.1	NR	rs6507681-T	0.744954	1E-251		0.071079	[0.067-0.075] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
918	chr18	43767902	43767903	rs80328729	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.1	NR	rs80328729-G	0.02091	6E-11	(DDB1)	0.1895	NR unit increase	Illumina [1671387] (imputed)	N
918	chr18	43768455	43768456	rs117540983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.1	C18orf25	rs117540983-T	0.019423	6E-10		0.05048851	[0.035-0.066] unit increase	Affymetrix [93095623] (imputed)	N
918	chr18	43769122	43769123	rs144667737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.1		rs144667737-?	NR	7E-20				NR [~ 8900000] (imputed)	N
918	chr18	43769948	43769948	rs34090858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.1	C18orf25	rs34090858-GA	0.185814	3E-63		0.056708504	[0.05-0.063] unit increase	Affymetrix [93095623] (imputed)	N
918	chr18	43772402	43772403	rs9964524	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18q21.1	NR	rs9964524-C	0.44175	4E-413		0.082699	[0.079-0.086] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
918	chr18	43774442	43774443	rs28404733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q21.1	C18orf25	rs28404733-G	0.714639	7E-40		0.03425898	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
918	chr18	43774442	43774443	rs28404733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q21.1	C18orf25	rs28404733-G	0.71463	3E-28		0.028407	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
918	chr18	43774442	43774443	rs28404733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.1	C18orf25	rs28404733-G	0.714647	6E-10		0.021034125	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
918	chr18	43774443	43774444	rs28671200	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	18q21.1	C18orf25	rs28671200-T	0.681	2E-8		0.0086	[0.0053-0.0119] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
919	chr18	43782790	43782791	rs7228024	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	18q21.1		rs7228024-A	0.255962	7E-9		0.027501	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
919	chr18	43787447	43787448	rs12962951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.1	C18orf25	rs12962951-C	0.74877	9E-46		0.047286406	[0.041-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43787447	43787448	rs12962951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q21.1	NR	rs12962951-C	0.749358	2E-242		0.074123	[0.07-0.078] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
919	chr18	43788044	43788045	rs4890628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.1		rs4890628-C	NR	6E-153		0.0573	[0.053-0.062] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
919	chr18	43788044	43788045	rs4890628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.1	C18orf25	rs4890628-C	0.745713	2E-41		0.0739295	[0.069-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43788044	43788045	rs4890628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs4890628-C	0.694598	1E-277				Affymetrix, Illumina [24246363] (imputed)	N
919	chr18	43788044	43788045	rs4890628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs4890628-C	0.691138	2E-264				Affymetrix, Illumina [20825802] (imputed)	N
919	chr18	43788044	43788045	rs4890628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.1		rs4890628-?	NR	1E-51				NR [~ 8900000] (imputed)	N
919	chr18	43793487	43793488	rs8095374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q21.1	C18orf25	rs8095374-C	0.558726	7E-25		0.02338549	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43793487	43793488	rs8095374	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	18q21.1	C18orf25	rs8095374-?		2E-13	(mean corpuscular hemoglobin)			Illumina [629274]	N
919	chr18	43793487	43793488	rs8095374	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	18q21.1	C18orf25	rs8095374-?		2E-10	(erythrocyte distribution width)			Illumina [629274]	N
919	chr18	43793807	43793808	rs8095142	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	18q21.1	C18orf25	rs8095142-?	NR	3E-22		0.04156	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
919	chr18	43793807	43793808	rs8095142	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	18q21.1	C18orf25	rs8095142-?	NR	7E-22		0.04126	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
919	chr18	43802125	43802126	rs4574015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	18q21.1	NR	rs4574015-C	0.750433	2E-23		0.023169	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
919	chr18	43802168	43802169	rs4542747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs4542747-T	0.689515	3E-62				Affymetrix, Illumina [24332387] (imputed)	N
919	chr18	43802168	43802169	rs4542747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.1	NR	rs4542747-T	0.746276	7E-61		0.035117	[0.031-0.039] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
919	chr18	43802777	43802778	rs12607898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q21.1		rs12607898-G	NR	1E-34		0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
919	chr18	43802777	43802778	rs12607898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.1	C18orf25	rs12607898-G	0.746438	3E-45		0.03592693	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43805660	43805661	rs12963943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q21.1	C18orf25	rs12963943-T	0.734519	4E-13		0.018629597	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43805660	43805661	rs12963943	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	18q21.1	C18orf25	rs12963943-T	NR	5E-85		0.0861728	[0.077-0.095] unit increase	Affymetrix [16832071] (imputed)	N
919	chr18	43808596	43808597	rs6507690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	18q21.1	C18orf25	rs6507690-A	0.749706	5E-20		0.0230154	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43808647	43808648	rs6507691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	18q21.1	C18orf25	rs6507691-C	0.7498	3E-79		0.07736181	[0.069-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43811299	43811300	rs9949494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.1	C18orf25	rs9949494-C	0.745317	4E-44		0.04700128	[0.04-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43812009	43812010	rs9952469	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	18q21.1		rs9952469-T	0.254	9E-121		0.3	[0.27-0.32] % increase	Affymetrix [NR] (imputed)	N
919	chr18	43816796	43816797	rs11356507	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	18q21.1	C18orf25	rs11356507-G	0.6374	3E-13		0.02836095	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43816796	43816797	rs11356507	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	18q21.1	C18orf25	rs11356507-G	0.6373	7E-10		0.02389735	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43816803	43816804	rs55874505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs55874505-G	0.480397	8E-20				Affymetrix, Illumina [24649327] (imputed)	N
919	chr18	43816803	43816804	rs55874505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.1	NR	rs55874505-G	0.584073	6E-20		0.018625	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
919	chr18	43816803	43816804	rs55874505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs55874505-G	0.518771	4E-19				Affymetrix, Illumina [23114412] (imputed)	N
919	chr18	43816803	43816804	rs55874505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.1	NR	rs55874505-G	0.584135	4E-19		0.018499	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
919	chr18	43825554	43825554	rs398032702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.1		rs398032702-TA	NR	3E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
919	chr18	43825554	43825554	rs398032702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q21.1		rs398032702-TA	NR	5E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
919	chr18	43825554	43825554	rs398032702	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q21.1		rs398032702-TA	NR	6E-18		0.0202	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
919	chr18	43825554	43825554	rs398032702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.541848	9E-15		0.01735254	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43825554	43825554	rs398032702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.541886	2E-13		0.01654628	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43825554	43825554	rs398032702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.541839	6E-9		0.013011213	[0.0086-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43825554	43825554	rs398032702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.5441	8E-10		0.02237769	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43825554	43825554	rs398032702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.5442	3E-9		0.02162555	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43825554	43825554	rs398032702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.5442	2E-9		0.02180245	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43825554	43825554	rs398032702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.5442	1E-10		0.02360284	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43825554	43825554	rs398032702	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	18q21.1	C18orf25	rs398032702-TA	0.5441	2E-9		0.02201497	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43829654	43829655	rs9955853	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	18q21.1		rs9955853-C	0.441	3E-14				Affymetrix [10369434] (imputed)	N
919	chr18	43829654	43829655	rs9955853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.1	C18orf25	rs9955853-T	0.55901	3E-9		0.013204003	[0.0088-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43829654	43829655	rs9955853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs9955853-C	0.452746	3E-32				Affymetrix, Illumina [17210439] (imputed)	N
919	chr18	43829654	43829655	rs9955853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q21.1	NR	rs9955853-C	0.441804	6E-34		0.023566	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
919	chr18	43831258	43831259	rs9944715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	18q21.1	C18orf25	rs9944715-G	0.7457	1E-109		0.09054608	[0.083-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43831258	43831259	rs9944715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	18q21.1	C18orf25	rs9944715-G	0.7457	5E-74		0.0739437	[0.066-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43832114	43832115	rs62098160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.1		rs62098160-?	NR	1E-15				NR [~ 8900000] (imputed)	N
919	chr18	43833277	43833278	rs4890633	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	18q21.1	NR	rs4890633-?	NR	5E-9				NR [2500000] (imputed)	N
919	chr18	43837892	43837893	rs11300113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q21.1		rs11300113-A	NR	8E-20		0.024	[0.019-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
919	chr18	43842031	43842032	rs11082518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q21.1	C18orf25	rs11082518-A	0.745496	3E-26		0.0360518	[0.029-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845268	43845269	rs3744858	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	18q21.1	C18orf25	rs3744858-T	0.7453	5E-10		0.02579685	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553144	1E-26		0.02419134	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.552938	2E-387		0.11166095	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-CTT	0.446961	2E-23		0.022340482	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553096	1E-35		0.036808822	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553046	2E-16		0.024515107	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553003	5E-41		0.0643851	[0.06-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553024	7E-40		0.038378462	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q21.1	C18orf25	rs3842397-C	0.553019	2E-12		0.015762448	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr18	43845880	43845882	rs3842397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	18q21.1	C18orf25	rs3842397-C	0.5528	9E-121		0.08348671	[0.076-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43845880	43845882	rs3842397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q21.1	C18orf25	rs3842397-C	0.5523	2E-13		0.02677698	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43845880	43845880	rs755467826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.1	NR	rs755467826-D	0.552365	2E-15		0.016328	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
919	chr18	43845880	43845880	rs755467826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q21.1	NR	rs755467826-D	0.552955	5E-26		0.021504	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
919	chr18	43845880	43845880	rs755467826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18q21.1	NR	rs755467826-D	0.552918	7E-17		0.017259	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
919	chr18	43849463	43849464	rs8093407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	18q21.1	C18orf25	rs8093407-G	0.7491	5E-25		0.04267536	[0.035-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	18q21.1		rs4890634-?	0.3062	8E-14		0.0625	[0.046-0.079] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	18q21.1		rs4890634-?	0.3124	3E-8		0.0626	[0.04-0.085] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	18q21.1		rs4890634-?	0.3062	4E-7		0.2101	[0.13-0.29] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	18q21.1		rs4890634-?	0.2527	3E-6		0.2733	[0.16-0.39] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	18q21.1		rs4890634-?	0.3062	4E-8		0.0872	[0.056-0.118] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43854258	43854259	rs4890634	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	18q21.1		rs4890634-?	0.2527	6E-6		0.1034	[0.059-0.148] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
919	chr18	43856266	43856267	rs718513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	18q21.1	NR	rs718513-C	0.489463	1E-26		0.043943	[0.036-0.052] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
919	chr18	43856266	43856267	rs718513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	18q21.1	NR	rs718513-C	0.489472	9E-27		0.04435	[0.036-0.052] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
919	chr18	43856296	43856297	rs718515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q21.1		rs718515-A	0.552015	1E-11		0.015403212	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43856296	43856297	rs718515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.1		rs718515-A	0.552779	6E-9		0.017223436	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
919	chr18	43856296	43856297	rs718515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs718515-A	0.471254	5E-23				Affymetrix, Illumina [23467995] (imputed)	N
919	chr18	43856296	43856297	rs718515	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs718515-A	0.440027	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
919	chr18	43856296	43856297	rs718515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.1		rs718515-?	NR	9E-217				NR [~ 8900000] (imputed)	N
919	chr18	43856296	43856297	rs718515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	18q21.1	intergenic	rs718515-A	0.5525	7E-72		0.06412797	[0.057-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43856296	43856297	rs718515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	18q21.1	intergenic	rs718515-A	0.5525	7E-73		0.06475529	[0.058-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
919	chr18	43867310	43867311	rs11877350	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	18q21.1	NR	rs11877350-A	NR	1E-13		0.0345404	[0.026-0.043] unit increase	Affymetrix [16832071] (imputed)	N
920	chr18	43925105	43925106	rs183464061	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	18q21.1	RNF165, C18orf25, C18orf23, LOXHD1	rs183464061-T	0.01	1E-7		1.39	[0.88-1.9] unit increase	Illumina [8454933] (imputed)	N
920	chr18	43925105	43925106	rs183464061	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in mild cognitive impairment	581 European ancestry MCI dementia cases	NA	18q21.1	RNF165, C18orf25, C18orf23	rs183464061-T	0.01	3E-6		1.53	[0.88-2.18] unit increase	Illumina [8448490] (imputed)	N
920	chr18	43984146	43984147	rs80011616	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in Alzheimer's disease dementia	190 European ancestry cases	NA	18q21.1	RNF165, C18orf23, LOXHD1	rs80011616-A	0.14	2E-7		0.92	[0.61-1.23] unit decrease	Illumina [8340470] (imputed)	N
921	chr18	44040558	44040559	rs4290554	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	18q21.1	NR	rs4290554-?		1E-6				Illumina [892589]	N
921	chr18	44040659	44040660	rs17766830	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	18q21.1		rs17766830-?	NR	7E-6		0.239	[0.14-0.34] unit increase	Illumina [5082878] (imputed)	N
921	chr18	44040659	44040660	rs17766830	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	18q21.1	NR	rs17766830-C	0.276254	7E-6		1.064	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
921	chr18	44045346	44045347	rs112134119	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q21.1	NR	rs112134119-?		2E-6				Illumina [4322238] (imputed)	N
921	chr18	44047186	44047187	rs1962929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.1		rs1962929-?	NR	4E-8				NR [~ 8900000] (imputed)	N
921	chr18	44137399	44137400	rs118174674	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	18q21.1	LOXHD1	rs118174674-T	1.99	2E-22	(recessive)	3.65	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
921	chr18	44137399	44137400	rs118174674	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	18q21.1		rs118174674-?	NR	3E-8		5.556158	z score increase	Affymetrix [NR] (imputed)	N
921	chr18	44170155	44170156	rs72913475	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	18q21.1	LOXHD1	rs72913475-?		7E-6	(BDE-153)	0.44	[0.24-0.64] unit increase	Affymetrix [629686]	N
921	chr18	44170155	44170156	rs72913475	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	18q21.1	LOXHD1	rs72913475-?		5E-8	(BDE-100)	0.55	[0.35-0.75] unit increase	Affymetrix [629686]	N
921	chr18	44170155	44170156	rs72913475	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	18q21.1	LOXHD1	rs72913475-?		3E-7	(BDE-47)	0.51	[0.31-0.71] unit increase	Affymetrix [629686]	N
922	chr18	44250167	44250168	rs2469903	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.1	NR	rs2469903-G	0.690823578477723	5E-8		0.0054337336	[0.0035-0.0074] unit increase	NR [NR]	N
922	chr18	44250167	44250168	rs2469903	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.1	NR	rs2469903-G	0.690823578477723	3E-8		0.008746645	[0.0056-0.0119] unit increase	NR [NR]	N
922	chr18	44250167	44250168	rs2469903	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.1	NR	rs2469903-G	0.690823578477723	3E-8		0.0055798776	[0.0036-0.0076] unit increase	NR [NR]	N
922	chr18	44268050	44268051	rs8093234	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.1	NR	rs8093234-?	NR	3E-11				Affymetrix [NR]	N
923	chr18	44345305	44345306	rs9945182	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.1	NR	rs9945182-?	NR	7E-6				Affymetrix [NR]	N
923	chr18	44354581	44354582	rs193178533	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Dialister sp000434475 abundance in stool	5,959 Finnish ancestry individuals	NA	18q21.1		rs193178533-A	0.0227769	2E-9		0.275753	[0.19-0.37] unit increase	Illumina [7980478] (imputed)	N
923	chr18	44428932	44428933	rs10468986	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	18q21.1	NA	rs10468986-C		8E-10		0.0115671	[0.0079-0.0153] unit decrease	Illumina [13288253] (imputed)	N
924	chr18	44450446	44450447	rs188878465	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	18q21.1	NR	rs188878465-T	0.01	6E-6		1.51	[1.33-1.69]	Illumina [8468885] (imputed)	N
924	chr18	44472869	44472869	rs5824642	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	18q21.1	NR	rs5824642-?	NR	1E-6		0.1852	[0.11-0.26] unit decrease	Illumina [at least 560000] (imputed)	N
924	chr18	44511430	44511431	rs183978498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.1		rs183978498-?	NR	5E-9				NR [~ 8900000] (imputed)	N
924	chr18	44513370	44513371	rs13381557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.1		rs13381557-A	0.5413	7E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
924	chr18	44513370	44513371	rs13381557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.1	Intergenic	rs13381557-A	0.5413	4E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr18	44570708	44570709	rs117792675	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDHD2	5,356 Icelandic ancestry individuals	NA	18q21.1		rs117792675-A	0.03386	5E-31		0.586426	[0.49-0.69] unit decrease	Illumina [7506463] (imputed)	N
925	chr18	44585419	44585420	rs2576037	21173776	de Moor MH	2010-12-21	Mol Psychiatry	Meta-analysis of genome-wide association studies for personality.	Conscientiousness	17,375 European ancestry individuals	3,294 European ancestry individuals	18q21.1	KATNAL2	rs2576037-T		1E-7		0.41	[0.27-0.55] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
925	chr18	44587653	44587654	rs2576035	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q21.1	KATNAL2	rs2576035-?	NR	8E-12		0.014188748	[0.01-0.018] unit decrease	NR [7306098]	N
925	chr18	44595258	44595259	rs4986228	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q21.1		rs4986228-A	0.6567	2E-7		36.33217	z score increase	NR [6814003]	N
925	chr18	44622510	44622510	rs143459388	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	18q21.1		rs143459388-CACT	0.032	4E-11		0.2207	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
925	chr18	44624706	44624707	rs140964667	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KATNAL2	rs140964667-?	NR	2E-9		1.77501	[NR] unit decrease	Affymetrix [NR] (imputed)	N
925	chr18	44631772	44631773	rs16958432	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18q21.1	NR	rs16958432-A	0.074	4E-6	(EA)	0.085	[0.05-0.12] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
925	chr18	44632883	44632884	rs16958440	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18q21.1	NR	rs16958440-G	0.074	4E-6	(EA)	0.085	[0.05-0.12] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
925	chr18	44664014	44664015	rs78720782	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDHD2	5,356 Icelandic ancestry individuals	NA	18q21.1		rs78720782-T	0.061	5E-133		0.891404	[0.82-0.96] unit increase	Illumina [7506463] (imputed)	N
925	chr18	44665656	44665657	rs76297747	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	18q21.1		rs76297747-?	NR	7E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
925	chr18	44678186	44678186	rs561968051	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	18q21.1	NR	rs561968051-A	0.557787	1E-11		0.0140596	[0.0099-0.0182] unit increase	Affymetrix [16583148] (imputed)	N
925	chr18	44688453	44688454	rs76922914	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q21.1	HDHD2	rs76922914-T	0.93703125	5E-77	(HDHD2, 13472_35_3)	0.91687983	[0.82-1.01] unit decrease	Illumina [> 1000000] (imputed)	N
926	chr18	44709034	44709035	rs117060920	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Serum magnesium levels	587 Han Chinese ancestry individuals	NA	18q21.1		rs117060920-?	NR	3E-6		0.006	[-3.80816-3.82016] unit decrease	Affymetrix [6423076] (imputed)	N
926	chr18	44736335	44736336	rs2635047	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	18q21.1	intergenic	rs2635047-T	0.483	6E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
926	chr18	44741062	44741063	rs75228657	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q21.1	HDHD2	rs75228657-G	0.052	5E-38	(Haloacid dehalogenase-like hydrolase domain-containing protein 2, HDHD2.13472.35.3)	0.7	[0.6-0.8] unit increase	Affymetrix [10572788] (imputed)	N
926	chr18	44741365	44741365	rs552988313	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	18q21.1	NR	rs552988313-T	0.542848	1E-8		0.00765331	[0.0051-0.0102] unit increase	Affymetrix [16578495] (imputed)	N
926	chr18	44750364	44750365	rs2668776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	18q21.1	NR	rs2668776-C	0.469033	7E-14		0.0228009	[0.017-0.029] unit increase	Affymetrix [16577313] (imputed)	N
926	chr18	44750364	44750365	rs2668776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	18q21.1	NR	rs2668776-C	0.469281	2E-22		0.0292238	[0.023-0.035] unit increase	Affymetrix [16577424] (imputed)	N
926	chr18	44752124	44752125	rs2137289	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	18q21.1	SKOR2	rs2137289-A	0.59	8E-20		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
926	chr18	44752237	44752238	rs1398217	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	18q21.1	FUSSEL18	rs1398217-G	0.43	2E-13		2.7	[1.92-3.48] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
926	chr18	44768023	44768024	rs12956009	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	18q21.1	NR	rs12956009-T	0.5663	4E-9		0.013215518	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
926	chr18	44768116	44768117	rs141768436	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		18q21.1	intergenic	rs141768436-G	0.014	9E-6		1.806	[1.02-2.59] unit increase	Illumina [640625] (imputed)	N
926	chr18	44773381	44773382	rs9956387	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.1		rs9956387-A	0.4963	1E-10		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
926	chr18	44773381	44773382	rs9956387	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q21.1	SKOR2	rs9956387-T	0.5046999999999999	3E-8		1.0199974		Affymetrix [11880941] (imputed)	N
926	chr18	44773381	44773382	rs9956387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs9956387-?	NR	4E-19				NR [~ 8900000] (imputed)	N
926	chr18	44775896	44775897	rs2668771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	SKOR2	rs2668771-G	NR	3E-8		0.0172829	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
926	chr18	44785301	44785302	rs2668767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q21.1	NR	rs2668767-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
926	chr18	44785301	44785302	rs2668767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q21.1		rs2668767-?	NR	2E-35				NR [~ 8900000] (imputed)	N
926	chr18	44787497	44787498	rs12962421	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q21.1		rs12962421-A	0.5373	3E-7		36.2017	z score increase	NR [6814003]	N
926	chr18	44788273	44788274	rs9965170	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	18q21.1	SKOR2, SMAD2	rs9965170-G		2E-44		0.012	[0.01-0.014] unit increase	Affymetrix [13304133] (imputed)	N
926	chr18	44788273	44788274	rs9965170	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.1	NA	rs9965170-A	0.4346	1E-9		0.0105	[0.0072-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
926	chr18	44788907	44788908	rs9944807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.1	NR	rs9944807-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
926	chr18	44788907	44788908	rs9944807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.1		rs9944807-?	NR	2E-8				NR [~ 8900000] (imputed)	N
926	chr18	44797696	44797697	rs34155040	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q21.1	SKOR2	rs34155040-C	0.57708	2E-11		0.014162	[0.01-0.018] unit decrease	NR [16516521] (imputed)	N
926	chr18	44799027	44799028	rs28628143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.1		rs28628143-T	NR	6E-10		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
926	chr18	44799194	44799195	rs2048524	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	18q21.1	NR	rs2048524-G	0.5735	1E-9		1.0665529	[1.05-1.09]	Affymetrix, Illumina [10858887] (imputed)	N
926	chr18	44799514	44799515	rs2048523	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	18q21.1	SKOR2, SMAD2	rs2048523-?	NR	1E-11		0.029	[0.038-0.021] unit decrease	Illumina [12039492]	N
927	chr18	44828676	44828677	rs1434513	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	18q21.1	ST8SIA5, PIAS2, KATNAL2, TCEB3CL2, TCEB3CL, TCEB3C, TCEB3B, HDHD2, IER3IP1, SKOR2	rs1434513-?	NR	2E-14		0.0189306	[0.014-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
927	chr18	44860263	44860264	rs9947662	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	18q21.1	intergenic	rs9947662-?	0.73	3E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
927	chr18	44929414	44929415	rs76952457	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	18q21.1	NR	rs76952457-A	NR	5E-6		0.1763	[0.1-0.25] unit increase	Illumina [11133794] (imputed)	N
928	chr18	44973220	44973221	rs143037915	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	18q21.1	BC040860	rs143037915-A	0.996	1E-6	(AA)	0.983	NR unit increase	Illumina [NR] (imputed)	N
928	chr18	45022712	45022713	rs11665213	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Asthma-chronic obstructive  pulmonary disease overlap syndrome	228 Korean ancestry cases, 5,915 Korean ancestry controls	NA	18q21.1	NR	rs11665213-?	NR	7E-6		2.232		Korean Chip	N
928	chr18	45031656	45031657	rs8098210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18q21.1		rs8098210-G	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
930	chr18	45222770	45222771	rs72906582	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	18q21.1	NR	rs72906582-A	0.101	8E-9	(women)	0.318619	[0.21-0.43] unit increase	Affymetrix [up to 8900000] (imputed)	N
930	chr18	45222770	45222771	rs72906582	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Progesterone levels	1,358 European ancestry men, 1,261 European ancestry women	NA	18q21.1	NR	rs72906582-A	0.101	6E-7		0.140791	[0.086-0.196] unit increase	Affymetrix [up to 8900000] (imputed)	N
930	chr18	45252015	45252016	rs2653622	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	18q21.1	NR	rs2653622-?	NR	8E-6	(EA)	7.67	[6.55-8.79]	Illumina [905956]	N
930	chr18	45327866	45327867	rs117423268	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q21.1		rs117423268-G	0.0010146	6E-6		0.47759	[0.27-0.68] unit decrease	Affymetrix [15580782] (imputed)	N
931	chr18	45370465	45370466	rs9304357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	18q21.1		rs9304357-T	0.291026	2E-9		0.0291486	[0.02-0.039] unit increase	Illumina [13470073] (imputed)	N
931	chr18	45371694	45371695	rs72661148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q21.1		rs72661148-?	NR	5E-8				NR [~ 8900000] (imputed)	N
931	chr18	45387821	45387822	rs74253035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q21.1		rs74253035-T	NR	7E-12		0.0284	[0.02-0.036] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
931	chr18	45399355	45399356	rs113114656	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	18q21.1	SMAD2	rs113114656-T	0.04	2E-6	(EA)	2.67	[NR]	Illumina [6728637] (imputed)	N
931	chr18	45425670	45425671	rs16958610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs16958610-C	0.0549673	8E-17				Affymetrix, Illumina [19872809] (imputed)	N
931	chr18	45467805	45467806	rs1539871	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	18q21.1		rs1539871-G	0.478244	2E-7		1.0780509	NR	Affymetrix [7846216] (imputed)	N
931	chr18	45467805	45467806	rs1539871	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.1	NR	rs1539871-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
931	chr18	45467805	45467806	rs1539871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q21.1		rs1539871-?	NR	7E-8				NR [~ 8900000] (imputed)	N
932	chr18	45482745	45482746	rs80142631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.1		rs80142631-?	NR	1E-10				NR [~ 8900000] (imputed)	N
932	chr18	45546184	45546185	rs7227917	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	18q21.1	SMAD2, ZBTB7C	rs7227917-A	0.890682263	8E-6		1.1139429	[1.06-1.17]	Illumina [10439017] (imputed)	N
932	chr18	45553109	45553109	rs112670701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q21.1		rs112670701-GTT	NR	8E-9		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
932	chr18	45569434	45569437	rs147500412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.1		rs147500412-A	NR	3E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
932	chr18	45569434	45569437	rs147500412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q21.1		rs147500412-A	NR	2E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
932	chr18	45578298	45578299	rs67466227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs67466227-G	0.44867	5E-10				Affymetrix, Illumina [24588908] (imputed)	N
932	chr18	45579620	45579621	rs79575701	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	18q21.1	ZBTB7C	rs79575701-?		6E-7	(Additive)	3.4	[2.10-5.50]	Illumina [5600610] (imputed)	N
932	chr18	45591187	45591188	rs6507798	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	18q21.1	NR	rs6507798-?	NR	9E-6		0.0636	[0.036-0.092] unit decrease	Illumina [at least 560000] (imputed)	N
932	chr18	45599648	45599649	rs144488974	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.1	ZBTB7C	rs144488974-C	0.994675	3E-9		0.0678397	[0.045-0.09] unit increase	NR [13737936] (imputed)	N
932	chr18	45604220	45604221	rs4940236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.1		rs4940236-?	NR	7E-18				NR [~ 8900000] (imputed)	N
932	chr18	45606092	45606093	rs7504492	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.1	ZBTB7C	rs7504492-T	0.621724	1E-13		0.0143226	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
932	chr18	45606092	45606093	rs7504492	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.1		rs7504492-?	NR	1E-12		0.014698	[0.01-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
933	chr18	45651463	45651464	rs11662183	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs11662183-T	NR	1E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr18	45657852	45657853	rs79272944	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	18q21.1	ZBTB7C	rs79272944-T	0.06	5E-16		0.4	[0.3-0.49] unit decrease	Affymetrix [339439]	N
933	chr18	45658046	45658047	rs7243437	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	18q21.1	ZBTB7C	rs7243437-A	0.6646	2E-14		0.0055	[0.0041-0.0069] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
933	chr18	45663786	45663787	rs12605964	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.1	NR	rs12605964-C	0.377549	1E-8		0.0115768	[0.0076-0.0156] unit decrease	NR [NR]	N
933	chr18	45667056	45667057	rs8098626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	18q21.1		rs8098626-G	NR	4E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
933	chr18	45667056	45667057	rs8098626	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18q21.1		rs8098626-G	NR	4E-23		0.0198	[0.016-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
933	chr18	45691180	45691181	rs9947155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18q21.1		rs9947155-G	NR	1E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
933	chr18	45692576	45692576	rs35216444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	18q21.1		rs35216444-CAAA	NR	1E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
934	chr18	45756073	45756074	rs17744291	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	18q21.1	NR	rs17744291-G	0.077	2E-6	(Males)	0.439385	[0.26-0.62] unit decrease	Illumina [~ 6600000] (imputed)	N
934	chr18	45799783	45799784	rs12455069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.1		rs12455069-?	NR	5E-9				NR [~ 8900000] (imputed)	N
934	chr18	45815416	45815417	rs1944582	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	18q21.1	KIAA0427	rs1944582-?	NR	4E-6				Affymetrix, Illumina [~ 1300000]	N
934	chr18	45865596	45865597	rs11082671	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	18q21.1	C18orf12	rs11082671-G	0.79	2E-8		0.107	[0.07-0.144] unit increase	Affymetrix [1532051] (imputed)	N
934	chr18	45865997	45865998	rs11663923	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	18q21.1	ZBTB7C	rs11663923-G	0.182	6E-6		0.13	[0.07-0.18] unit increase	Affymetrix [7435577] (imputed)	N
935	chr18	45876301	45876302	rs55696495	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q21.1	ZBTB7C, CTIF	rs55696495-?	NR	2E-8		0.017224126	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
935	chr18	45885063	45885064	rs72919581	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	18q21.1	NR	rs72919581-?	NR	2E-6		0.06	NR unit increase	Affymetrix [388620]	N
935	chr18	45887101	45887102	rs752726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs752726-?	NR	3E-17				NR [~ 8900000] (imputed)	N
935	chr18	45912923	45912924	rs148980742	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	18q21.1		rs148980742-?	NR	9E-6		0.3756866	unit increase	Illumina [NR] (imputed)	N
935	chr18	45921213	45921214	rs7239114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.1		rs7239114-A	NR	2E-9		0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
935	chr18	45921213	45921214	rs7239114	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q21.1	ZBTB7C	rs7239114-G	0.458349	2E-21		0.0134996	[0.011-0.016] unit decrease	Affymetrix [12370749]	N
935	chr18	45921213	45921214	rs7239114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.1	NR	rs7239114-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
935	chr18	45921213	45921214	rs7239114	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.1		rs7239114-?	NR	7E-11				NR [~ 8900000] (imputed)	N
935	chr18	45921213	45921214	rs7239114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.1	NA	rs7239114-A	0.5414	6E-13		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
935	chr18	45921213	45921214	rs7239114	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q21.1	NA	rs7239114-A	0.5414	6E-13		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
935	chr18	45941306	45941307	rs1873128	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.1	NR	rs1873128-?	NR	1E-10				Affymetrix [NR]	N
935	chr18	45945686	45945687	rs7235650	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	18q21.1	CTIF	rs7235650-?	NR	3E-6	(conditioned on rs168622)	0.124	[0.071-0.177] unit increase	Affymetrix [9346801] (imputed)	N
935	chr18	45945686	45945687	rs7235650	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	18q21.1	CTIF	rs7235650-?	NR	9E-6	(conditioned on rs4814175)	0.032	[0.018-0.046] unit increase	Affymetrix [9346801] (imputed)	N
935	chr18	45946974	45946975	rs141612882	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.1	ZBTB7C	rs141612882-A	0.0014	9E-6		0.6572	[0.37-0.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
936	chr18	46035783	46035784	rs144303414	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18q21.1	NR	rs144303414-?	NR	2E-6	(EA)	11.821151	[7.06-16.58] unit decrease	Affymetrix [at least 600000] (imputed)	N
936	chr18	46035783	46035784	rs144303414	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18q21.1	NR	rs144303414-?	NR	1E-6		11.885	NR unit increase	Affymetrix [at least 600000] (imputed)	N
936	chr18	46037518	46037519	rs111219378	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q21.1	intergenic	rs111219378-T	0.1289	2E-11		0.0194	[0.014-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
936	chr18	46041754	46041755	rs8087252	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	18q21.1	ZBTB7C, CTIF	rs8087252-G	0.865	7E-9				NR [509413]	N
936	chr18	46069100	46069101	rs41336052	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.1	NR	rs41336052-?	NR	3E-16				Affymetrix [NR]	N
936	chr18	46087935	46087936	rs8091660	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin in ovarian cancer (MTT IC50)	74 lymphoblastoid cell lines	NA	18q21.1	CTIF	rs8091660-?	NR	9E-6				Illumina [6243550] (imputed)	N
937	chr18	46149046	46149047	rs3786178	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	18q21.1	CTIF	rs3786178-A	0.02	2E-6		0.192	[0.11-0.27] unit increase	Affymetrix, Illumina [up to 2659730] (imputed)	N
937	chr18	46198489	46198490	rs299741	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	18q21.1	CTIF	rs299741-A	0.4076	4E-8		0.012548543	[0.0081-0.017] unit decrease	Affymetrix [11514463] (imputed)	N
937	chr18	46207267	46207268	rs78415359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.1	CTIF, RP11-426J5.2	rs78415359-A	0.031875	2E-15		0.050007224	[0.038-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr18	46207267	46207268	rs78415359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q21.1	CTIF, RP11-426J5.2	rs78415359-A	0.031868	2E-19		0.057361625	[0.045-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr18	46207267	46207268	rs78415359	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q21.1	CTIF, RP11-426J5.2	rs78415359-A	0.031875	3E-19		0.057057258	[0.045-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr18	46207267	46207268	rs78415359	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.1	NR	rs78415359-A	0.030368	8E-19		0.048495	[0.038-0.059] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
937	chr18	46207267	46207268	rs78415359	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.1		rs78415359-?	NR	7E-15				NR [~ 8900000] (imputed)	N
937	chr18	46207267	46207268	rs78415359	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	18q21.1	CTIF, RP11-426J5.2	rs78415359-A	0.0324	2E-10		0.06412393	[0.044-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr18	46227443	46227444	rs16949825	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q21.1	NR	rs16949825-C	0.902274750778816	7E-6	(IGP55)	0.2457	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
937	chr18	46227443	46227444	rs16949825	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q21.1	NR	rs16949825-C	0.902274750778816	3E-6	(IGP43)	0.2547	[0.15-0.36] unit increase	Illumina [~ 2500000] (imputed)	N
937	chr18	46240710	46240711	rs9947954	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q21.1	NR	rs9947954-C	0.425160203096539	8E-6	(IGP41)	0.1398	[0.078-0.201] unit decrease	Illumina [~ 2500000] (imputed)	N
938	chr18	46277225	46277226	rs16949934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs16949934-?	NR	2E-17				NR [~ 8900000] (imputed)	N
938	chr18	46317087	46317088	rs12455557	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	18q21.1	NR	rs12455557-?		6E-6	(AA)			Illumina [up to 524000]	N
938	chr18	46323865	46323866	rs62103272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.1	CTIF	rs62103272-T	0.188454	5E-11		0.018901167	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
938	chr18	46323865	46323866	rs62103272	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		18q21.1	PTPRM	rs62103272-T	0.071	9E-6		0.719	[0.41-1.03] unit increase	Illumina [640625] (imputed)	N
938	chr18	46330653	46330654	rs62103293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.1	CTIF	rs62103293-T	0.111083	4E-9		0.020870144	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
938	chr18	46330653	46330654	rs62103293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.1		rs62103293-?	NR	6E-12				NR [~ 8900000] (imputed)	N
938	chr18	46332394	46332395	rs1994558	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	18q21.1	NR	rs1994558-A	NR	7E-6	(GEE model)	0.41538	[0.23-0.6] unit decrease	NR [NR] (imputed)	N
938	chr18	46333723	46333724	rs62103295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs62103295-A	0.112308	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
938	chr18	46336701	46336702	rs7227892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.1		rs7227892-?	NR	5E-12				NR [~ 8900000] (imputed)	N
938	chr18	46336701	46336702	rs7227892	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	18q21.1	intergenic	rs7227892-?	0.72	2E-6		1.14	[1.08-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
938	chr18	46338215	46338216	rs8093350	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q21.1	NR	rs8093350-?	NR	2E-6		0.0037	[0.0021-0.0053] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
938	chr18	46340689	46340690	rs2337110	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	18q21.1	NR	rs2337110-?	NR	2E-6		0.004	[0.0024-0.0056] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
938	chr18	46343069	46343070	rs12327213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.1	NR	rs12327213-A	0.109624	2E-12		0.020845	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
938	chr18	46343220	46343221	rs12607403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q21.1	CTIF	rs12607403-T	0.879952	2E-13		0.025521575	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr18	46343220	46343221	rs12607403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q21.1	CTIF	rs12607403-T	0.879945	5E-11		0.022779765	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr18	46358786	46358787	rs74450593	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.1	NR	rs74450593-A	0.0473627	2E-9		0.0437249	[0.029-0.058] unit increase	NR [19129689] (imputed)	N
938	chr18	46364447	46364448	rs73956041	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	18q21.1		rs73956041-T	0.982873	6E-6		0.0501458	[0.028-0.072] unit decrease	Illumina [13900000] (imputed)	N
938	chr18	46371992	46371993	rs4939821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	18q21.1		rs4939821-?	NR	2E-8				NR [~ 8900000] (imputed)	N
938	chr18	46390046	46390047	rs72915668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q21.1	CTIF	rs72915668-G	0.063598	3E-10		0.02915053	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
938	chr18	46390046	46390047	rs72915668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q21.1	CTIF	rs72915668-G	0.06363	3E-11		0.030719854	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
938	chr18	46390046	46390047	rs72915668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.1	CTIF	rs72915668-G	0.063625	6E-10		0.028583622	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
938	chr18	46395021	46395022	rs7240004	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	18q21.1	Intergenic	rs7240004-?		4E-8				Illumina [9725440] (imputed)	N
938	chr18	46395021	46395022	rs7240004	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	18q21.1	Intergenic	rs7240004-?		3E-6				Illumina [9560910] (imputed)	N
938	chr18	46395021	46395022	rs7240004	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q21.1	NR	rs7240004-A	0.62	3E-10	(EA)	1.0858526		Affymetrix, Illumina [~ 9000000] (imputed)	N
938	chr18	46395021	46395022	rs7240004	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q21.1	NR	rs7240004-A	0.62	1E-10	(EA)	1.068784		Affymetrix, Illumina [~ 9000000] (imputed)	N
938	chr18	46395021	46395022	rs7240004	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18q21.1	SMAD7	rs7240004-A	0.616	1E-9		1.057	[1.026-1.088]	Affymetrix, Illumina [1230000] (imputed)	N
939	chr18	46441596	46441597	rs28558565	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	18q21.1		rs28558565-?	NR	4E-8		1.12	[1.07-1.16]	Illumina [5170515] (imputed)	N
939	chr18	46446839	46446840	rs8088297	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	18q21.1	MAPK4	rs8088297-?	NR	3E-15				Illumina [747780]	N
939	chr18	46446839	46446840	rs8088297	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	18q21.1	MAPK4	rs8088297-?	NR	1E-11	(>=14 yr)			Illumina [747780]	N
939	chr18	46448804	46448805	rs6507874	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	18q21.1		rs6507874-T	NR	3E-8		1.1402	NR	Affymetrix [7846216] (imputed)	N
939	chr18	46448804	46448805	rs6507874	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Colorectal cancer	4,562 European ancestry cases, 382,756 European ancestry controls	NA	18q21.1	SMAD7	rs6507874-C	0.473	2E-14				Affymetrix [28000000] (imputed)	N
939	chr18	46449110	46449111	rs8085824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.1		rs8085824-C	NR	3E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
939	chr18	46449110	46449111	rs8085824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.1		rs8085824-C	NR	2E-11		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
939	chr18	46450975	46450976	rs7229639	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	18q21.1	SMAD7	rs7229639-A	0.17	2E-27		1.21	[1.17-1.25]	Affymetrix, Illumina [up to 10700000] (imputed)	N
939	chr18	46450975	46450976	rs7229639	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	18q21.1	SMAD7	rs7229639-?	0.145	3E-12		1.2004802	[1.14-1.26]	Illumina [6774630] (imputed)	N
939	chr18	46450975	46450976	rs7229639	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	18q21.1	NR	rs7229639-A	0.16	3E-15		1.2	[1.16-1.25]	Affymetrix, Illumina [~ 4000000] (imputed)	N
939	chr18	46450975	46450976	rs7229639	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	18q21.1	SMAD7	rs7229639-A	0.16	2E-8	(East Asian)	1.2	[1.16-1.25]	Affymetrix, Illumina [2400000] (imputed)	N
939	chr18	46450975	46450976	rs7229639	24448986	Zhang B	2014-01-21	Int J Cancer	Genome-wide association study identifies a new SMAD7 risk variant associated with colorectal cancer risk in East Asians.	Colorectal cancer	1,773 East Asian ancestry cases, 2,642 East Asian ancestry controls	6,902 East Asian ancestry cases, 7,862 East Asian ancestry controls	18q21.1	SMAD7	rs7229639-A	0.145	3E-11		1.22	[1.15-1.29]	Affymetrix, Illumina [1695815] (imputed)	N
939	chr18	46451145	46451146	rs12956924	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	18q21.1	SMAD7	rs12956924-A	0.315512	4E-8		1.0365282	1.02337271144026-1.04985278553262]	NR [9572556] (imputed)	N
939	chr18	46451145	46451146	rs12956924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	18q21.1		rs12956924-?	NR	2E-10				NR [~ 8900000] (imputed)	N
939	chr18	46451872	46451873	rs4939567	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	18q21.1		rs4939567-?	NR	1E-17	(Colorectal polyp)	0.9	[0.88-0.92]	Illumina [NR] (imputed)	N
939	chr18	46451872	46451873	rs4939567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs4939567-A	0.502995	2E-14				Affymetrix, Illumina [20825802] (imputed)	N
939	chr18	46451872	46451873	rs4939567	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	18q21.1	NR	rs4939567-G	NR	1E-22		1.1820331	[1.14-1.22]	Illumina [6774630] (imputed)	N
939	chr18	46452326	46452327	rs2337113	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	18q21.1		rs2337113-A	0.536	6E-10		0.07	[-0.09--0.05] % decrease	Affymetrix [NR] (imputed)	N
939	chr18	46453155	46453156	rs11874392	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	18q21.1		rs11874392-?	NR	3E-18		0.85	[0.82-0.87]	Illumina [NR] (imputed)	N
939	chr18	46453155	46453156	rs11874392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	18q21.1		rs11874392-T	0.655793679	6E-25		0.18115799	[0.15-0.22] unit decrease	Illumina [13428297] (imputed)	N
939	chr18	46453155	46453156	rs11874392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	18q21.1		rs11874392-T	NR	6E-36		0.1573	[0.13-0.18] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
939	chr18	46453155	46453156	rs11874392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	18q21.1		rs11874392-T	NR	5E-28		0.1025	[0.084-0.121] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
939	chr18	46453155	46453156	rs11874392	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	18q21.1		rs11874392-T	0.656781841	2E-20		0.8433536	[0.81344516-0.874361716]	Illumina [8919992] (imputed)	N
939	chr18	46453155	46453156	rs11874392	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	18q21.1	SMAD7	rs11874392-A	0.545	4E-74		1.17	[1.15-1.19]	Affymetrix, Illumina [16900397] (imputed)	N
939	chr18	46453155	46453156	rs11874392	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	18q21.1	NR	rs11874392-A	0.49	7E-8		1.27	[1.17-1.39]	Illumina [9875636] (imputed)	N
939	chr18	46453462	46453463	rs4939827	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	18q21.1		rs4939827-?	NR	1E-7		0.875513	[0.83-0.92]	NR [675173]	N
939	chr18	46453462	46453463	rs4939827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.1	SMAD7	rs4939827-C	0.477717	9E-13		0.0159778	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
939	chr18	46453462	46453463	rs4939827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.1	SMAD7	rs4939827-C	0.477685	1E-11		0.015068513	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
939	chr18	46453462	46453463	rs4939827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q21.1	NR	rs4939827-C	0.478194	6E-14		0.01455	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
939	chr18	46453462	46453463	rs4939827	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	18q21.1		rs4939827-T	NR	5E-8		1.1864	NR	Affymetrix [7846216] (imputed)	N
939	chr18	46453462	46453463	rs4939827	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	18q21.1		rs4939827-T	NR	3E-10		1.154	[1.104-1.206]	Affymetrix [7846216] (imputed)	N
939	chr18	46453462	46453463	rs4939827	32324875	Campbell PT	2020-04-23	J Natl Cancer Inst	Association of body mass index with colorectal cancer risk by genome-wide variants.	Colorectal cancer x BMI interaction (2df)	14,059 European ancestry cases, 14,416 European ancestry controls	NA	18q21.1		rs4939827-?		2E-10	(women)			Affymetrix, Illumina [2700000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	18q21.1	SMAD7	rs4939827-T	NR	1E-15	(East Asian)	1.13	[1.09-1.16]	Affymetrix, Illumina [up to 47000000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.1		rs4939827-?	NR	8E-11				NR [~ 8900000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	18q21.1	SMAD7	rs4939827-T	0.24	5E-15		1.13	[1.09-1.16]	Affymetrix, Illumina [up to 10700000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	18q21.1	NR	rs4939827-T	0.532	3E-30	(EA)	1.14	[1.12-1.17]	Affymetrix, Illumina [12931465] (imputed)	N
939	chr18	46453462	46453463	rs4939827	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	18q21.1	NR	rs4939827-T	0.24	2E-8		1.12	[1.08-1.16]	Affymetrix, Illumina [~ 4000000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	18q21.1	SMAD7	rs4939827-T	0.54	2E-15		1.13	[1.1-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
939	chr18	46453462	46453463	rs4939827	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	18q21.1	SMAD7	rs4939827-?	0.52	2E-10		1.12	[1.09-1.16]	Affymetrix, Illumina [2708280] (imputed)	N
939	chr18	46453462	46453463	rs4939827	21761138	Peters U	2011-07-15	Hum Genet	Meta-analysis of new genome-wide association studies of colorectal cancer risk.	Colorectal cancer	2,906 European ancestry cases, 3,416 European ancestry controls	8,161 European ancestry cases, 9,101 European ancestry controls	18q21.1	SMAD7	rs4939827-?	0.51	1E-7		1.14	[1.08-1.18]	Illumina [378739]	N
939	chr18	46453462	46453463	rs4939827	18372905	Tomlinson IP	2008-03-30	Nat Genet	A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.	Colorectal cancer	922 European ancestry cases, 927 European ancestry controls	17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls	18q21.1	SMAD7	rs4939827-?	0.53	2E-6		1.18	[1.10-1.25]	Illumina [547647]	N
939	chr18	46453462	46453463	rs4939827	18372901	Tenesa A	2008-03-30	Nat Genet	Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.	Colorectal cancer	981 European ancestry cases, 1,002 European ancestry controls	10,287 European ancestry cases, 10,401 European ancestry controls, 4,400 Japanese ancestry cases, 3,179 Japanese ancestry controls, 1,789 cases, 1,771 controls	18q21.1	SMAD7	rs4939827-T	0.52	8E-28		1.2	[1.16-1.24]	Illumina [541628]	N
939	chr18	46453462	46453463	rs4939827	17934461	Broderick P	2007-10-14	Nat Genet	A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk.	Colorectal cancer	930 European ancestry cases, 960 European ancestry controls	7,473 European ancestry cases, 5,984 European ancestry controls	18q21.1	SMAD7	rs4939827-T	0.52	1E-12		1.16	[1.09-1.27]	Illumina [547647]	N
939	chr18	46453681	46453681	rs557304297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q21.1	NR	rs557304297-I	0.453124	3E-13		0.014767	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
939	chr18	46453928	46453929	rs12953717	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	18q21.1	SMAD7	rs12953717-?		3E-7		1.261	[NR]	Affymetrix [492217] (imputed)	N
939	chr18	46453928	46453929	rs12953717	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	18q21.1	SMAD7	rs12953717-?		9E-7		1.302	[NR]	Affymetrix [492217] (imputed)	N
939	chr18	46454047	46454048	rs7226855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs7226855-G	0.528471	1E-12				Affymetrix, Illumina [24246363] (imputed)	N
939	chr18	46454047	46454048	rs7226855	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	18q21.1	NR	rs7226855-A	NR	6E-71		1.21	[1.19-1.24]	Affymetrix, Illumina [> 10000000] (imputed)	N
939	chr18	46454047	46454048	rs7226855	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	18q21.1	SMAD7	rs7226855-A	0.55	4E-23		1.25	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
939	chr18	46455468	46455469	rs36025258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.1	SMAD7	rs36025258-T	0.475593	1E-10		0.014731548	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
939	chr18	46458226	46458227	rs9946510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.1		rs9946510-?	NR	5E-8				NR [~ 8900000] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.1	SMAD7	rs2337106-G	0.516705	1E-13		0.016504707	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q21.1	SMAD7	rs2337106-G	0.516675	2E-20		0.020716224	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q21.1	SMAD7	rs2337106-G	0.51671	5E-21		0.02098036	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs2337106-G	0.530581	3E-16				Affymetrix, Illumina [24332387] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs2337106-G	0.530814	7E-25				Affymetrix, Illumina [24653286] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18q21.1	NR	rs2337106-G	0.518491	5E-26		0.019717	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs2337106-G	0.530819	1E-24				Affymetrix, Illumina [24558453] (imputed)	N
939	chr18	46460902	46460903	rs2337106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	18q21.1	NR	rs2337106-G	0.518578	1E-25		0.019543	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
939	chr18	46460902	46460903	rs2337106	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	18q21.1	SMAD7	rs2337106-G	0.5505	5E-9		5.845	NR z score increase	Illumina [26237160] (imputed)	N
939	chr18	46460902	46460903	rs2337106	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18q21.1	SMAD7	rs2337106-C	0.453	6E-9		0.451	[0.27-0.64] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
939	chr18	46460902	46460903	rs2337106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.1		rs2337106-?	NR	2E-16				NR [~ 8900000] (imputed)	N
939	chr18	46460902	46460903	rs2337106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.1		rs2337106-?	NR	2E-22				NR [~ 8900000] (imputed)	N
939	chr18	46460902	46460903	rs2337106	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.1		rs2337106-?	NR	4E-20		0.0187273	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
939	chr18	46460902	46460903	rs2337106	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	18q21.1	SMAD7	rs2337106-?	NR	1E-8		0.02163	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
939	chr18	46460902	46460903	rs2337106	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	18q21.1	SMAD7	rs2337106-?	NR	5E-9		0.02167	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
939	chr18	46460902	46460903	rs2337106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	18q21.1	SMAD7	rs2337106-G	0.5168	4E-9		0.02113925	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr18	46460902	46460903	rs2337106	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	18q21.1	SMAD7	rs2337106-G	0.5168	2E-10		0.02279753	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr18	46461785	46461786	rs7238442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	18q21.1		rs7238442-C	NR	1E-18		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
939	chr18	46463135	46463136	rs2878889	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	18q21.1	SMAD7	rs2878889-G		8E-19		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
939	chr18	46463135	46463136	rs2878889	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18q21.1	SMAD7	rs2878889-A	0.5336	6E-12		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
939	chr18	46463135	46463136	rs2878889	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	18q21.1	SMAD7	rs2878889-A	0.4728	4E-8		0.0037	[0.0023-0.0051] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
939	chr18	46463135	46463136	rs2878889	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	18q21.1	SMAD7	rs2878889-G	0.4468	9E-10		0.02199812	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr18	46465347	46465348	rs35715456	27816938	Tanaka T	2016-11-05	J Gerontol A Biol Sci Med Sci	Genome-wide Association Study of Parental Life Span.	Parental longevity (at least one long-lived parent)	1,140 European American individuals with at least one long-lived parent, 3,894 European American individuals, 137 African American individuals with at least one long-lived parent, 545 African American individuals	1,950 individuals	18q21.1	SMAD7	rs35715456-?	NR	2E-7		0.3	[0.20-0.40] unit increase	Illumina [~ 2500000]	N
939	chr18	46465539	46465540	rs9952412	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q21.1	SMAD7	rs9952412-A	0.467863	4E-8	(-4 ms)	0.0299081	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
939	chr18	46465539	46465540	rs9952412	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q21.1	SMAD7	rs9952412-A	0.467863	3E-8	(2 ms)	0.0303842	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
939	chr18	46465539	46465540	rs9952412	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.1	SMAD7	rs9952412-A	0.483599	3E-26		0.0199009	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
939	chr18	46469649	46469650	rs57633475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q21.1		rs57633475-G	NR	2E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
939	chr18	46469649	46469650	rs57633475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.1	SMAD7	rs57633475-G	0.121863	9E-10		0.02101442	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr18	46469649	46469650	rs57633475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.1	SMAD7	rs57633475-G	0.121836	6E-14		0.025463017	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr18	46469649	46469650	rs57633475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs57633475-G	0.160116	9E-16				Affymetrix, Illumina [19872809] (imputed)	N
939	chr18	46469649	46469650	rs57633475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q21.1	NR	rs57633475-G	0.121715	6E-16		0.02465	[0.019-0.031] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
939	chr18	46469649	46469650	rs57633475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.1		rs57633475-?	NR	1E-17				NR [~ 8900000] (imputed)	N
939	chr18	46469663	46469664	rs4245230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q21.1		rs4245230-G	NR	7E-22		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
939	chr18	46469663	46469664	rs4245230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	18q21.1		rs4245230-G	0.514251	5E-9		0.0168509	[0.011-0.023] unit decrease	Illumina [13478778] (imputed)	N
939	chr18	46469663	46469664	rs4245230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18q21.1		rs4245230-G	NR	2E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
939	chr18	46469663	46469664	rs4245230	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	18q21.1	SMAD7	rs4245230-A	0.47	3E-12		7.0	z-score increase	Affymetrix [4311822] (imputed)	N
939	chr18	46469961	46469962	rs9945126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q21.1		rs9945126-G	NR	1E-12		0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
939	chr18	46469961	46469962	rs9945126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	18q21.1		rs9945126-G	NR	3E-16		0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
939	chr18	46469961	46469962	rs9945126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q21.1	NR	rs9945126-G	NR	1E-14		0.0187	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
939	chr18	46469961	46469962	rs9945126	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.1	NR	rs9945126-C	0.464802	1E-8		0.00443838	[0.0028-0.0061] unit increase	Affymetrix [16582909] (imputed)	N
939	chr18	46469961	46469962	rs9945126	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.1	NR	rs9945126-C	0.464802	1E-7		0.00461682	[0.0028-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
939	chr18	46472620	46472621	rs12956326	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.1	SMAD7	rs12956326-A	0.721273	3E-12		0.0146275	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
939	chr18	46474177	46474178	rs12967019	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.1		rs12967019-?	NR	4E-18		0.0176753	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
939	chr18	46474191	46474192	rs9953366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	18q21.1		rs9953366-C	NR	2E-8		0.0551	[0.036-0.075] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
939	chr18	46474191	46474192	rs9953366	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	18q21.1	SMAD7	rs9953366-C	0.663	2E-11		1.05	[1.04-1.07]	Illumina [34740186] (imputed)	N
939	chr18	46474191	46474192	rs9953366	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	18q21.1	SMAD7	rs9953366-C	0.68	2E-10	(EA)	1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
939	chr18	46474191	46474192	rs9953366	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	18q21.1	SMAD7	rs9953366-C	0.66	9E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
939	chr18	46479305	46479306	rs34296038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.1	SMAD7	rs34296038-A	0.14144	4E-9		0.019142376	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
939	chr18	46482069	46482070	rs2337143	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	18q21.1	SMAD7	rs2337143-A	0.3442	8E-10		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
939	chr18	46483809	46483810	rs2337147	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39 on monocyte	2,909 Sardinian (founder/genetic isolate) ancestry individuals	NA	18q21.1		rs2337147-A	0.354	2E-8		0.165	[0.11-0.22] unit decrease	Illumina [17952944] (imputed)	N
939	chr18	46501069	46501070	rs12968652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs12968652-?	NR	1E-34				NR [~ 8900000] (imputed)	N
939	chr18	46510304	46510305	rs12960829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q21.1		rs12960829-?	NR	9E-10				NR [~ 8900000] (imputed)	N
939	chr18	46515915	46515916	rs9945890	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	18q21.1	SMAD7, DYM	rs9945890-T	0.631427	2E-8		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
939	chr18	46516373	46516374	rs7229351	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	18q21.1	NR	rs7229351-A	0.367426	1E-9		0.0609675	[0.041-0.081] unit decrease	Affymetrix [21375087] (imputed)	N
939	chr18	46516467	46516468	rs7229520	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q21.1	intergenic	rs7229520-A	0.6616	3E-34		0.0234	[0.02-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
939	chr18	46516467	46516468	rs7229520	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	18q21.1	SMAD7, DYM	rs7229520-?	NR	1E-12		0.0361989	[0.026-0.046] unit increase	Illumina [4804024] (imputed)	N
939	chr18	46516467	46516468	rs7229520	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Coronary artery disease	21,611 Japanese ancestry male cases, 87,736 Japanese ancestry male controls	NA	18q21.1		rs7229520-A	0.464049087	4E-9		1.0693011	[1.045688746-1.093446615]	Illumina [8919992] (imputed)	N
939	chr18	46526190	46526191	rs2878901	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	18q21.1	NR	rs2878901-?		1E-6	(F7)	0.2323	[NR] unit increase	Illumina [NR]	N
939	chr18	46526809	46526810	rs2337157	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	18q21.1	intergenic	rs2337157-A	0.409	2E-8		0.036	[0.022-0.05] unit decrease	Affymetrix [7947838] (imputed)	N
939	chr18	46528786	46528787	rs833509	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	18q21.1	intergenic	rs833509-T	0.28	2E-8		0.0399	[0.026-0.054] unit decrease	NR [8041861] (imputed)	N
940	chr18	46545923	46545924	rs357887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs357887-G	NR	2E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46559718	46559719	rs10853575	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.1	NR	rs10853575-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
940	chr18	46562029	46562030	rs181553	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.1	DYM	rs181553-A	0.6769	9E-15	(EA)	0.0292	[0.022-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
940	chr18	46562029	46562030	rs181553	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.1	DYM	rs181553-A	0.6769	3E-7	(EA,men)	0.0278	[0.017-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
940	chr18	46562029	46562030	rs181553	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.1	DYM	rs181553-A	0.6769	3E-10	(EA, women)	0.0305	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
940	chr18	46564312	46564313	rs833519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RP11-15F12.1	rs833519-G	NR	2E-13		0.0250508	[0.018-0.032] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46564558	46564559	rs833520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	RP11-15F12.1	rs833520-T	NR	9E-11		0.0247814	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
940	chr18	46567480	46567481	rs1288812	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	RP11-15F12.1	rs1288812-T	NR	7E-14		0.0250753	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
940	chr18	46567677	46567678	rs78472646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs78472646-G	NR	2E-11		0.0378	[0.027-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46567677	46567678	rs78472646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs78472646-G	NR	3E-9		0.0352	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46567677	46567678	rs78472646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs78472646-G	NR	3E-12		0.0415	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46567783	46567784	rs2282546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q21.1		rs2282546-?	NR	4E-12				NR [~ 8900000] (imputed)	N
940	chr18	46578170	46578171	rs74475730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs74475730-T	NR	2E-10		0.0458742	[0.032-0.06] unit increase	Affymetrix [319769] (imputed)	N
940	chr18	46578170	46578171	rs74475730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q21.1	DYM	rs74475730-T	NR	8E-10		0.044347	[0.03-0.059] unit increase	Affymetrix [319769] (imputed)	N
940	chr18	46579969	46579970	rs357894	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs357894-C	NR	9E-15		0.0223949	[0.017-0.028] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46579969	46579970	rs357894	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	18q21.1	SMAD7	rs357894-?	NR	4E-6	(DMFS5max)			Illumina [518997]	N
940	chr18	46581312	46581313	rs1000055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs1000055-A	NR	1E-13		0.0212019	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
940	chr18	46581312	46581313	rs1000055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs1000055-A	NR	2E-9		0.0188217	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
940	chr18	46582358	46582359	rs16950303	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q21.1	NR	rs16950303-?	NR	1E-7		0.04087427	[0.026-0.056] unit decrease	Illumina [34656550] (imputed)	N
940	chr18	46582358	46582359	rs16950303	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	18q21.1	DYM	rs16950303-A	0.73	5E-16		0.042	[0.03-0.054] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
940	chr18	46583152	46583153	rs357896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs357896-A	NR	6E-9		0.0187487	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
940	chr18	46583152	46583153	rs357896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs357896-A	NR	3E-26		0.0341687	[0.028-0.04] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46585234	46585235	rs357900	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	18q21.1	DYM	rs357900-A	0.365	4E-9	(AA)	0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
940	chr18	46585234	46585235	rs357900	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	18q21.1	DYM	rs357900-A		9E-23				Affymetrix, Illumina [17972582] (imputed)	N
940	chr18	46585234	46585235	rs357900	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	18q21.1	DYM	rs357900-A	0.365	2E-6	(AA)	0.04	[0.024-0.056] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
940	chr18	46585820	46585821	rs357901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs357901-A	NR	2E-11		0.0304776	[0.022-0.039] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46587653	46587654	rs1787200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs1787200-G	NR	4E-8		0.0248927	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
940	chr18	46587653	46587654	rs1787200	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q21.1	NR	rs1787200-?	NR	2E-12		0.04481382	[0.032-0.057] unit increase	Illumina [34656550] (imputed)	N
940	chr18	46587653	46587654	rs1787200	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	18q21.1	DYM	rs1787200-T	0.37	7E-10		0.044	[0.024-0.064] unit increase	Affymetrix [855034]	N
940	chr18	46587653	46587654	rs1787200	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	18q21.1	DYM	rs1787200-A	0.37	1E-10		0.053	[0.037-0.069] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
940	chr18	46592407	46592408	rs62102286	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	18q21.1	DYM	rs62102286-T	0.5641	5E-11		0.0487	[0.034-0.063] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
940	chr18	46592884	46592885	rs75864278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs75864278-G	NR	4E-12		0.0460458	[0.033-0.059] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46604850	46604851	rs11664336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs11664336-?	NR	5E-102				NR [~ 8900000] (imputed)	N
940	chr18	46605774	46605775	rs2584758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs2584758-T	NR	6E-9		0.0216499	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46609457	46609458	rs143793852	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	18q21.1	DYM	rs143793852-C	0.434	1E-12		0.051	[0.037-0.065] unit increase	Illumina [33400000] (imputed)	N
940	chr18	46611841	46611842	rs33973388	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q21.1	DYM	rs33973388-T	0.4353	1E-38		0.0249	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
940	chr18	46614185	46614186	rs55831752	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs55831752-C	NR	2E-26		0.0302539	[0.025-0.036] unit increase	Affymetrix [321016] (imputed)	N
940	chr18	46617050	46617051	rs357886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.1		rs357886-T	NR	5E-50		0.0211	[0.018-0.024] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
940	chr18	46621817	46621817	rs557714011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs557714011-GT	NR	2E-10		0.0354902	[0.025-0.046] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46632317	46632318	rs1096921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs1096921-G	NR	5E-10		0.0265643	[0.018-0.035] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46634576	46634577	rs833502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs833502-G	NR	4E-19		0.0366364	[0.029-0.045] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46636410	46636411	rs1103804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs1103804-A	NR	5E-19		0.0298281	[0.023-0.036] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46636410	46636411	rs1103804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs1103804-A	NR	9E-10		0.0223967	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
940	chr18	46637563	46637564	rs698610	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.1	NR	rs698610-C	0.767402	2E-10		0.0510504	[0.035-0.067] unit increase	Affymetrix [17914406] (imputed)	N
940	chr18	46639197	46639198	rs833500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs833500-A	NR	2E-9		0.0223	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46639197	46639198	rs833500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs833500-A	NR	2E-21		0.0368	[0.029-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46639197	46639198	rs833500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs833500-A	NR	1E-27		0.0423	[0.035-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
940	chr18	46640781	46640782	rs8097746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs8097746-C	NR	5E-13		0.0207692	[0.015-0.026] unit decrease	Affymetrix [321016] (imputed)	N
940	chr18	46640781	46640782	rs8097746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs8097746-C	NR	3E-11		0.0209094	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
940	chr18	46643328	46643329	rs73441521	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q21.1	DYM	rs73441521-T	0.9489	2E-9		0.0247	[0.017-0.033] unit increase	Affymetrix [18391927] (imputed)	N
940	chr18	46650436	46650437	rs2878902	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.1	RP11-15F12.3, DYM	rs2878902-T	0.7531	3E-10		0.0465	[0.032-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
940	chr18	46653379	46653380	rs7236575	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.1	DYM	rs7236575-A	0.144351	5E-10	(females)	0.02167	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
940	chr18	46653379	46653380	rs7236575	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.1	DYM	rs7236575-A	0.144351	2E-10		0.01409	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
940	chr18	46653379	46653380	rs7236575	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.1	DYM	rs7236575-A	0.144351	5E-7	(females)	0.01696	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
940	chr18	46653379	46653380	rs7236575	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.1	DYM	rs7236575-A	0.144351	4E-8		0.01145	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
940	chr18	46657357	46657358	rs12458127	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	18q21.1		rs12458127-T	0.341252	3E-17		0.018081	[0.014-0.022] unit decrease	Illumina [13479295] (imputed)	N
940	chr18	46657357	46657358	rs12458127	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q21.1	DYM	rs12458127-?	NR	1E-19		0.02745859	[0.022-0.033] unit decrease	Illumina [27896057] (imputed)	N
940	chr18	46657357	46657358	rs12458127	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	18q21.1	NR	rs12458127-?	NR	4E-6		0.03705775	[0.021-0.053] unit decrease	Illumina [34656550] (imputed)	N
941	chr18	46669113	46669114	rs10775490	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs10775490-C	NR	2E-10		0.0273746	[0.019-0.036] unit decrease	Affymetrix [323123] (imputed)	N
941	chr18	46683753	46683754	rs72923818	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q21.1	NR	rs72923818-?	NR	1E-6	(EA)	0.4612	[0.28-0.65] unit increase	Illumina [up to 11892802] (imputed)	N
941	chr18	46684629	46684630	rs116843086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs116843086-A	0.990336	1E-16		0.178564	[0.14-0.22] unit increase	NR [11722792] (imputed)	N
941	chr18	46684629	46684630	rs116843086	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs116843086-A	0.990336	6E-12		0.147149	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
941	chr18	46689510	46689511	rs8086595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs8086595-T	NR	5E-10		0.032094	[0.022-0.042] unit decrease	Affymetrix [321016] (imputed)	N
941	chr18	46689876	46689877	rs7231453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs7231453-G	NR	1E-10		0.0259166	[0.018-0.034] unit decrease	Affymetrix [323123] (imputed)	N
941	chr18	46697136	46697137	rs4559969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs4559969-T	NR	5E-23		0.031644	[0.025-0.038] unit decrease	Affymetrix [321016] (imputed)	N
941	chr18	46709453	46709454	rs9954569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs9954569-A	NR	2E-8		0.0184453	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
941	chr18	46709453	46709454	rs9954569	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.1	DYM	rs9954569-A	0.3293	9E-6		0.0301	[0.017-0.043] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
941	chr18	46709589	46709591	rs776329292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs776329292-CACA	NR	2E-8		0.0181631	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
941	chr18	46722861	46722862	rs74334864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.1	NR	rs74334864-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
941	chr18	46744944	46744945	rs201691087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs201691087-C	NR	4E-10		0.0402429	[0.028-0.053] unit decrease	Affymetrix [323123] (imputed)	N
941	chr18	46748041	46748042	rs36131420	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.1	NR	rs36131420-T	0.44188	6E-9		0.0400981	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
941	chr18	46750910	46750911	rs2156250	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs2156250-T	NR	7E-21		0.0291493	[0.023-0.035] unit increase	Affymetrix [323123] (imputed)	N
941	chr18	46754063	46754064	rs79943003	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	18q21.1	NR	rs79943003-T	0.011343	4E-8		0.30677906	[0.2-0.42] mg/dl increase	Illumina [24111857] (imputed)	N
941	chr18	46756116	46756117	rs12606808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs12606808-G	NR	8E-9		0.0332955	[0.022-0.045] unit decrease	Affymetrix [321016] (imputed)	N
941	chr18	46766153	46766154	rs4939853	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	18q21.1	DYM	rs4939853-G		2E-6		1.09	[1.052-1.13]	Illumina [4498586] (imputed)	N
941	chr18	46773559	46773560	rs11662738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs11662738-C	NR	2E-19		0.0257379	[0.02-0.031] unit decrease	Affymetrix [321016] (imputed)	N
941	chr18	46773559	46773560	rs11662738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs11662738-C	NR	4E-13		0.0226032	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
941	chr18	46776887	46776888	rs117406288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs117406288-?	NR	9E-13				NR [~ 8900000] (imputed)	N
941	chr18	46781013	46781014	rs150237291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.1	DYM	rs150237291-T	0.978201	6E-12		0.045222	[0.032-0.058] unit decrease	Affymetrix [NR] (imputed)	N
941	chr18	46781013	46781014	rs150237291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.1	DYM	rs150237291-T	0.978189	3E-13		0.04942	[0.036-0.063] unit decrease	Affymetrix [NR] (imputed)	N
942	chr18	46818709	46818710	rs71355378	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.1	DYM	rs71355378-A	0.8434	6E-8		0.0665	[0.042-0.091] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
942	chr18	46823699	46823700	rs12960046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs12960046-G	NR	2E-11		0.0225934	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
942	chr18	46837577	46837578	rs141793746	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	18q21.1	DYM	rs141793746-T	0.003	3E-8		4.317551	[2.79-5.85] unit increase	Illumina [24111857] (imputed)	N
942	chr18	46844239	46844240	rs77317783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs77317783-C	NR	6E-12		0.0265729	[0.019-0.034] unit decrease	Affymetrix [321016] (imputed)	N
942	chr18	46847108	46847109	rs11659570	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.1	DYM	rs11659570-T	0.4347	3E-8		0.0357	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
942	chr18	46853269	46853270	rs494752	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q21.1	NA	rs494752-C	0.6548	2E-16		0.0154	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
942	chr18	46860642	46860643	rs550258	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	18q21.1	DYM	rs550258-T	0.35	5E-8		0.0511	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
942	chr18	46865390	46865391	rs478682	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.1	NR	rs478682-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
942	chr18	46885024	46885025	rs7242873	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	18q21.1	NR	rs7242873-G	0.08	2E-13		0.024	[0.018-0.03] unit increase	Affymetrix [2446094] (imputed)	N
942	chr18	46885024	46885025	rs7242873	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	18q21.1	NR	rs7242873-G	0.08	5E-8				Affymetrix [2446094] (imputed)	N
942	chr18	46888638	46888639	rs192446476	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	18q21.1	NR	rs192446476-C	0.0117187	2E-8		0.30899283	[0.2-0.42] mg/dl increase	Illumina [24111857] (imputed)	N
942	chr18	46889937	46889938	rs3809924	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	18q21.1	NR	rs3809924-A	0.3454	3E-16		0.0153	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
942	chr18	46901633	46901634	rs12962555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs12962555-A	NR	3E-12		0.0198743	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
942	chr18	46901633	46901634	rs12962555	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs12962555-A	NR	9E-9		0.01786	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
942	chr18	46901633	46901634	rs12962555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q21.1	NR	rs12962555-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
942	chr18	46902575	46902576	rs76856822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs76856822-C	NR	4E-9		0.0564	[0.038-0.075] unit increase	Affymetrix [9000000] (imputed)	N
942	chr18	46913932	46913933	rs113974699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs113974699-A	NR	3E-9		0.0464556	[0.031-0.062] unit decrease	Affymetrix [323123] (imputed)	N
942	chr18	46923502	46923503	rs8087325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs8087325-A	NR	3E-23		0.0287959	[0.023-0.034] unit decrease	Affymetrix [321016] (imputed)	N
942	chr18	46923502	46923503	rs8087325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs8087325-A	NR	2E-15		0.0251093	[0.019-0.031] unit decrease	Affymetrix [323123] (imputed)	N
943	chr18	46925958	46925959	rs62102874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs62102874-C	NR	1E-8		0.0204822	[0.013-0.028] unit increase	Affymetrix [321016] (imputed)	N
943	chr18	46925958	46925959	rs62102874	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	DYM	rs62102874-C	NR	1E-9		0.0239489	[0.016-0.032] unit increase	Affymetrix [323123] (imputed)	N
943	chr18	46947540	46947541	rs12456780	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	18q21.1	DYM	rs12456780-T	0.33	1E-8		0.0633	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
943	chr18	46949799	46949800	rs12965213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs12965213-C	NR	7E-13		0.0231027	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
943	chr18	46959499	46959500	rs9967417	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	18q21.1	DYM	rs9967417-G	0.42	5E-9		1.13	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
943	chr18	46959499	46959500	rs9967417	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q21.1	DYM	rs9967417-C	0.58	9E-25		0.038	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
943	chr18	46972437	46972438	rs2156498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs2156498-G	NR	5E-9		0.0622	[0.041-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr18	46972437	46972438	rs2156498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs2156498-G	NR	7E-10		0.0656	[0.045-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr18	46978549	46978550	rs28862462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	DYM	rs28862462-T	NR	1E-8		0.020563	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
943	chr18	46985186	46985187	rs28447549	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.1	NR	rs28447549-C	0.565751	7E-10		0.0421222	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
943	chr18	46991159	46991160	rs8099594	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	18q21.1	DYM	rs8099594-A	0.65	3E-7		0.05	[0.02-0.08] s.d. increase (males)	Affymetrix [402951]	N
943	chr18	46993066	46993067	rs9962610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RP11-110H1.1	rs9962610-A	NR	3E-8		0.0160061	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
943	chr18	46994684	46994685	rs71355390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RP11-110H1.1	rs71355390-A	NR	8E-10		0.0471816	[0.032-0.062] unit decrease	Affymetrix [321016] (imputed)	N
943	chr18	46994684	46994685	rs71355390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	18q21.1	RP11-110H1.1	rs71355390-A	NR	1E-8		0.0480739	[0.032-0.065] unit decrease	Affymetrix [323123] (imputed)	N
943	chr18	47014121	47014122	rs71363019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RPL17-C18orf32, MIR1539	rs71363019-T	NR	2E-8		0.044307	[0.029-0.06] unit increase	Affymetrix [319769] (imputed)	N
943	chr18	47014121	47014122	rs71363019	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18q21.1	NR	rs71363019-T	0.0328	2E-9		0.0336	[0.023-0.045] unit increase	NR [~ 27400000] (imputed)	N
943	chr18	47015319	47015320	rs34092054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RPL17-C18orf32, MIR1539, RPL17	rs34092054-A	NR	2E-9		0.0169491	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
943	chr18	47025347	47025358	rs201123820	32099098	Polimanti R	2020-02-26	Mol Psychiatry	Leveraging genome-wide data to investigate differences between opioid use vs. opioid dependence in 41,176 individuals from the Psychiatric Genomics Consortium.	Opioid dependence	1,027 African ancestry cases, 3,211 European ancestry cases, 6,111 African ancestry controls, 11,589 European ancestry controls	NA	18q21.1	LOC101928144	rs201123820-T	0.0193	3E-8	(African)	5.547	z score increase	NR [up to 8896928] (imputed)	N
943	chr18	47027022	47027023	rs12958032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs12958032-G	NR	2E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
943	chr18	47027022	47027023	rs12958032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs12958032-G	NR	7E-11		0.0165	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
943	chr18	47027022	47027023	rs12958032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs12958032-G	NR	7E-15		0.0197	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
943	chr18	47049699	47049700	rs76290759	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs76290759-A	0.989918	2E-11		0.139028	[0.098-0.18] unit decrease	NR [11722792] (imputed)	N
943	chr18	47049699	47049700	rs76290759	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium HDL	4,734 individuals	NA	18q21.1		rs76290759-G	0.010778716	1E-8		0.60807	[0.4-0.82] mmol/l increase	Illumina [7701709] (imputed)	N
943	chr18	47054316	47054317	rs10853580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	18q21.1	RP11-110H1.8	rs10853580-G	NR	1E-12		0.0255853	[0.019-0.033] unit decrease	Affymetrix [321016] (imputed)	N
944	chr18	47066143	47066144	rs80204526	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholines	4,734 individuals	NA	18q21.1		rs80204526-A	0.011314708	4E-9		0.595224	[0.4-0.79] mmol/l increase	Illumina [7701709] (imputed)	N
944	chr18	47066143	47066144	rs80204526	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phosphatidylcholine and other cholines	4,734 individuals	NA	18q21.1		rs80204526-A	0.011500877	5E-9		0.596101	[0.4-0.8] mmol/l increase	Illumina [7701709] (imputed)	N
944	chr18	47066203	47066204	rs118175831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs118175831-T	NR	2E-14		0.0609	[0.045-0.077] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47066203	47066204	rs118175831	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs118175831-T	NR	1E-18		0.0703	[0.055-0.086] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47088829	47088830	rs35816125	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	18q21.1	LIPG	rs35816125-?		2E-12				NR [NR]	N
944	chr18	47093863	47093864	rs2000813	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	18q21.1	LIPG	rs2000813-?	NR	6E-16		0.008636	[0.0065-0.0108] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47093863	47093864	rs2000813	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	18q21.1	LIPG	rs2000813-?	NR	6E-18		0.008583	[0.0064-0.0107] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47093863	47093864	rs2000813	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	18q21.1	LIPG	rs2000813-T	0.2959	2E-6		0.033	[0.019-0.047] unit decrease	NR [8041861] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	2E-8	(conditioned on 885 SNPs)	0.67	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	1E-6		0.587	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	1E-9	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	5E-10	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	8E-9		0.686	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	2E-9	(conditioned on 885 SNPs)	0.72	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	6E-10	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	4E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in very large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47095861	47095862	rs201922257	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs201922257-?	NR	5E-10	(conditioned on 885 SNPs)	0.77	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47106027	47106028	rs149615216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	18q21.1		rs149615216-C	0.989205	1E-9		0.120771	[0.082-0.16] unit decrease	NR [11722792] (imputed)	N
944	chr18	47106027	47106028	rs149615216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs149615216-C	0.989202	5E-17		0.165886	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
944	chr18	47106027	47106028	rs149615216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	18q21.1		rs149615216-C	0.989205	6E-10		0.12172	[0.083-0.16] unit decrease	NR [11722792] (imputed)	N
944	chr18	47106027	47106028	rs149615216	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	18q21.1		rs149615216-C	0.989205	7E-10		0.122391	[0.084-0.161] unit decrease	NR [11722792] (imputed)	N
944	chr18	47106027	47106028	rs149615216	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium HDL	4,734 individuals	NA	18q21.1		rs149615216-T	0.011269183	3E-8		0.549049	[0.36-0.74] mmol/l increase	Illumina [7701709] (imputed)	N
944	chr18	47106027	47106028	rs149615216	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium HDL particle concentration	4,734 individuals	NA	18q21.1		rs149615216-T	0.011269183	2E-8		0.556994	[0.36-0.75] mmol/l increase	Illumina [7701709] (imputed)	N
944	chr18	47106027	47106028	rs149615216	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein A-I	4,734 individuals	NA	18q21.1		rs149615216-T	0.011231095	2E-9		0.589238	[0.4-0.78] mmol/l increase	Illumina [7701709] (imputed)	N
944	chr18	47106027	47106028	rs149615216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.1	LIPG	rs149615216-T	0.01106	4E-12		0.07473116	[0.054-0.096] unit increase	Affymetrix [93095623] (imputed)	N
944	chr18	47106027	47106028	rs149615216	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs149615216-C	NR	2E-18		0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47106027	47106028	rs149615216	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs149615216-C	0.987	5E-16	(EA)	0.168	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47106027	47106028	rs149615216	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs149615216-C	NR	7E-50		0.246	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47106027	47106028	rs149615216	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs149615216-C	0.987	3E-47	(EA)	0.245	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47106027	47106028	rs149615216	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	18q21.1	LIPG	rs149615216-T	0.0119	3E-9		0.30159053	[0.2-0.4] mg/dl increase	Illumina [24111857] (imputed)	N
944	chr18	47106027	47106028	rs149615216	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	18q21.1	LIPG	rs149615216-T	0.01	1E-12		0.229	[0.17-0.29] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
944	chr18	47107151	47107152	rs12970066	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs12970066-C	NR	3E-7		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47107151	47107152	rs12970066	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	HDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	18q21.1	LIPG	rs12970066-G	0.28	2E-9		0.784	[0.53-1.03] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
944	chr18	47109692	47109693	rs9951026	23666239	Chung CC	2013-05-12	Nat Genet	Meta-analysis identifies four new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	582 European ancestry male cases, 1,056 European ancestry male controls	3,560 European ancestry male cases, 8,510 European ancestry male controls	18q21.1	LIPG	rs9951026-?	NR	5E-6		1.22	[1.12-1.33]	Illumina [NR]	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-19		0.159047	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-36		0.222705	[0.19-0.26] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-55		0.268716	[0.24-0.3] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-29		0.197891	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-63		0.287786	[0.25-0.32] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-13		0.129607	[0.095-0.164] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-14		0.125395	[0.094-0.157] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-44		0.250915	[0.22-0.29] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-84		0.325493	[0.29-0.36] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-34		0.216916	[0.18-0.25] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-41		0.213874	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-19		0.157599	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-77		0.301875	[0.27-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-23		0.176995	[0.14-0.21] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-34		0.217639	[0.18-0.25] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-28		0.191514	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-70		0.300253	[0.27-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-75		0.310454	[0.28-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-27		0.188546	[0.15-0.22] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	9E-30		0.191057	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-28		0.196646	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-14		0.134647	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-14		0.135446	[0.1-0.17] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	7E-55		0.273167	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-25		0.184123	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986763	2E-22		0.161462	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-70		0.307435	[0.27-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-13		0.132115	[0.097-0.168] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-16		0.134389	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	9E-60		0.291285	[0.26-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-89		0.337145	[0.3-0.37] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-46		0.22767	[0.2-0.26] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-16		0.142511	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-86		0.320225	[0.29-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-79		0.320802	[0.29-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-83		0.325805	[0.29-0.36] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-54		0.272485	[0.24-0.31] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-19		0.157178	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-44		0.246303	[0.21-0.28] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-55		0.253103	[0.22-0.28] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986763	2E-42		0.218294	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-10		0.109384	[0.075-0.143] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986765	8E-14		0.133442	[0.098-0.168] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-11		0.115466	[0.081-0.15] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-43		0.243656	[0.21-0.28] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	1E-76		0.303811	[0.27-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-35		0.195543	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	7E-13		0.125466	[0.091-0.16] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-61		0.264028	[0.23-0.3] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-16		0.139034	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-16		0.133413	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-26		0.191504	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-83		0.320242	[0.29-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-40		0.210456	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-71		0.302338	[0.27-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-11		0.113994	[0.081-0.147] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-35		0.222223	[0.19-0.26] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-26		0.185818	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	9E-15		0.139149	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-22		0.169844	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-19		0.15689	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-13		0.117139	[0.085-0.149] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-18		0.157529	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	5E-64		0.281508	[0.25-0.31] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	7E-30		0.181165	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-23		0.171996	[0.14-0.21] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	9E-53		0.247721	[0.22-0.28] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-8		0.0959025	[0.063-0.129] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986763	3E-28		0.189243	[0.16-0.22] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-18		0.157097	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-25		0.184196	[0.15-0.22] unit increase	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	8E-15		0.140135	[0.1-0.18] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	6E-17		0.146279	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	2E-10		0.104008	[0.072-0.136] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-25		0.186454	[0.15-0.22] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	4E-67		0.287219	[0.25-0.32] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-31		0.184732	[0.15-0.22] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	3E-20		0.160811	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs77960347-A	0.986766	8E-82		0.315918	[0.28-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47109954	47109955	rs77960347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	18q21.1		rs77960347-G	NR	4E-64		0.1695	[0.15-0.19] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
944	chr18	47109954	47109955	rs77960347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	18q21.1		rs77960347-G	NR	3E-12		0.0711	[0.051-0.091] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
944	chr18	47109954	47109955	rs77960347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	18q21.1		rs77960347-G	NR	6E-13		0.271194	[0.2-0.34] unit increase	Affymetrix [87696910] (imputed)	N
944	chr18	47109954	47109955	rs77960347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	18q21.1		rs77960347-G	NR	3E-12		0.287623	[0.21-0.37] unit increase	Affymetrix [87696910] (imputed)	N
944	chr18	47109954	47109955	rs77960347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	18q21.1		rs77960347-G	NR	1E-11		0.287524	[0.2-0.37] unit increase	Affymetrix [87696910] (imputed)	N
944	chr18	47109954	47109955	rs77960347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-G	NR	3E-88		0.2071	[0.19-0.23] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-G	NR	2E-19		0.0941	[0.074-0.114] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-G	NR	9E-183		0.3132	[0.29-0.33] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-G	NR	2E-243		0.3634	[0.34-0.38] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.1	LIPG	rs77960347-G	0.01337	7E-16		0.07792908	[0.059-0.097] unit increase	Affymetrix [93095623] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.987106	7E-22				Affymetrix, Illumina [22063850] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.986692	3E-22		0.079699	[0.064-0.096] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.986653	3E-24		0.0851286	[0.069-0.102] unit decrease	Affymetrix [15000001]	N
944	chr18	47109954	47109955	rs77960347	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	18q21.1		rs77960347-?	NR	7E-9		0.0525688	[0.035-0.07] unit decrease	NR [6912294] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	18q21.1	LIPG	rs77960347-A	0.986648	8E-15		0.0706855	[0.053-0.089] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.1	LIPG	rs77960347-A	0.98665	4E-269		0.291004	[0.27-0.31] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.1	LIPG	rs77960347-A	0.986709	4E-337		0.336049	[0.32-0.35] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47109954	47109955	rs77960347	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	18q21.1	LIPG	rs77960347-?	NR	6E-14		0.0832	[0.064-0.103] unit increase	Affymetrix [5701386] (imputed)	N
944	chr18	47109954	47109955	rs77960347	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.98662	2E-8		0.0451566	[0.029-0.061] unit decrease	NR [NR]	N
944	chr18	47109954	47109955	rs77960347	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	18q21.1		rs77960347-A	0.9869	4E-6	(EA)	0.031	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
944	chr18	47109954	47109955	rs77960347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.1		rs77960347-?	NR	4E-18				NR [~ 8900000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q21.1	LIPG	rs77960347-A	0.9878	1E-39		0.1674	[0.14-0.19] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q21.1	LIPG	rs77960347-A	0.9878	4E-9		0.075	[0.05-0.1] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q21.1	LIPG	rs77960347-A	0.9878	3E-73		0.2326	[0.21-0.26] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
944	chr18	47109954	47109955	rs77960347	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-A	NR	2E-18		0.175	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47109954	47109955	rs77960347	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.987	6E-16	(EA)	0.166	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47109954	47109955	rs77960347	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-A	NR	5E-51		0.247	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47109954	47109955	rs77960347	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs77960347-A	0.987	2E-48	(EA)	0.246	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47109954	47109955	rs77960347	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	18q21.1	LIPG	rs77960347-?	0.0127	5E-27	(EA)	5.0	mg/dl increase	Illumina [247644]	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-9		0.254219	[0.17-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-20		0.398284	[0.31-0.48] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-24		0.420277	[0.34-0.5] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-16		0.350387	[0.27-0.43] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-28		0.455818	[0.37-0.54] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-25		0.454343	[0.37-0.54] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	8E-40		0.53498	[0.46-0.61] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-15		0.342736	[0.26-0.43] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-15		0.302807	[0.23-0.38] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-33		0.47307	[0.4-0.55] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-9		0.255889	[0.17-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	2E-17		0.366853	[0.28-0.45] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-11		0.276848	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	6E-32		0.483739	[0.4-0.56] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	4E-33		0.492629	[0.41-0.57] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-10		0.272562	[0.19-0.36] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	2E-12		0.286712	[0.21-0.37] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	5E-15		0.337135	[0.25-0.42] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-8		0.240059	[0.16-0.32] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	2E-25		0.442339	[0.36-0.53] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-9		0.260558	[0.18-0.34] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-8		0.22974	[0.15-0.31] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-17		0.366148	[0.28-0.45] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-31		0.493912	[0.41-0.58] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-12		0.308657	[0.22-0.39] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-32		0.515658	[0.43-0.6] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-42		0.558408	[0.48-0.64] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	6E-18		0.331535	[0.26-0.41] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-38		0.508598	[0.43-0.59] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	9E-36		0.515467	[0.43-0.6] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	3E-36		0.5144	[0.43-0.59] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	3E-24		0.434205	[0.35-0.52] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	1E-10		0.269103	[0.19-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	3E-9		0.256361	[0.17-0.34] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997761	7E-19		0.380791	[0.3-0.46] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-23		0.386469	[0.31-0.46] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-16		0.321252	[0.25-0.4] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	4E-11		0.25618	[0.18-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-22		0.419469	[0.34-0.5] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-34		0.486274	[0.41-0.56] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-12		0.27099	[0.2-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-25		0.402059	[0.33-0.48] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	9E-16		0.351693	[0.27-0.44] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	7E-38		0.517679	[0.44-0.6] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-14		0.293056	[0.22-0.37] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	6E-33		0.490685	[0.41-0.57] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-19		0.396326	[0.31-0.48] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-12		0.30055	[0.22-0.38] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-9		0.262942	[0.18-0.35] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-11		0.296628	[0.21-0.38] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	6E-30		0.459138	[0.38-0.54] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-10		0.243843	[0.17-0.32] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	5E-22		0.378736	[0.3-0.46] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	2E-13		0.306734	[0.23-0.39] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	4E-8		0.241764	[0.16-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-13		0.313993	[0.23-0.4] unit increase	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	6E-15		0.340941	[0.26-0.43] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	4E-31		0.466311	[0.39-0.55] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	8E-11		0.250443	[0.17-0.33] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	1E-9		0.236018	[0.16-0.31] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs117623631-C	0.997758	3E-36		0.502519	[0.42-0.58] unit decrease	NR [11722792] (imputed)	N
944	chr18	47113164	47113165	rs117623631	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	18q21.1		rs117623631-?	NR	8E-30		0.224579	[0.18-0.27] unit increase	NR [9800000] (imputed)	N
944	chr18	47113164	47113165	rs117623631	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	18q21.1		rs117623631-?	NR	2E-144		0.487363	[0.45-0.53] unit increase	NR [9800000] (imputed)	N
944	chr18	47113164	47113165	rs117623631	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	18q21.1		rs117623631-?	NR	5E-159		0.537522	[0.5-0.58] unit increase	NR [9800000] (imputed)	N
944	chr18	47113164	47113165	rs117623631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs117623631-T	NR	3E-30		0.2768	[0.23-0.32] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47113164	47113165	rs117623631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs117623631-T	NR	3E-68		0.4411	[0.39-0.49] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47113164	47113165	rs117623631	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs117623631-T	NR	9E-82		0.4882	[0.44-0.54] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47118397	47118398	rs9958734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	18q21.1		rs9958734-C	0.442732	1E-32		0.0426464	[0.036-0.05] unit increase	Illumina [13476599] (imputed)	N
944	chr18	47118397	47118398	rs9958734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	18q21.1		rs9958734-C	NR	3E-10		0.049	[0.034-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
944	chr18	47118397	47118398	rs9958734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	18q21.1		rs9958734-C	0.442509138	2E-8		0.052462254	[0.034-0.071] unit increase	Illumina [13429980] (imputed)	N
944	chr18	47118397	47118398	rs9958734	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	18q21.1	LIPG	rs9958734-?	NR	3E-6	(HIspanic/Latino)	1.023826	[0.59-1.45] unit increase	Illumina [31978362] (imputed)	N
944	chr18	47118397	47118398	rs9958734	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	18q21.1	LIPG	rs9958734-T	0.61	2E-15	(Asian initial, BMI unadjusted)	0.09	[0.068-0.112] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
944	chr18	47118397	47118398	rs9958734	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	18q21.1	LIPG	rs9958734-T	0.62	3E-13	(BMI unadjusted)	0.11	[0.081-0.139] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
944	chr18	47118922	47118923	rs3786247	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	18q21.1	LIPG	rs3786247-?		2E-29		0.0445	[0.037-0.052] unit increase	Illumina [31500000] (imputed)	N
944	chr18	47118922	47118923	rs3786247	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	18q21.1	LIPG	rs3786247-?		3E-47		0.076	[0.066-0.086] unit increase	Illumina [31500000] (imputed)	N
944	chr18	47118922	47118923	rs3786247	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	18q21.1	LIPG	rs3786247-?	NR	5E-30		0.04427	[0.037-0.052] unit increase novel	Illumina [6108953] (imputed)	N
944	chr18	47118922	47118923	rs3786247	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	18q21.1	LIPG	rs3786247-T	0.6	7E-19	(Asian initial, BMI unadjusted)	0.094	[0.074-0.114] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
944	chr18	47118922	47118923	rs3786247	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	18q21.1	LIPG	rs3786247-T	0.6	5E-15	(BMI unadjusted)	0.106	[0.081-0.131] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
944	chr18	47119578	47119579	rs11082764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	18q21.1		rs11082764-G	0.461542	9E-55		0.0734488	[0.064-0.083] unit increase	Illumina [13465896] (imputed)	N
944	chr18	47119578	47119579	rs11082764	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	18q21.1	LIPG	rs11082764-?	NR	6E-51		0.07838	[0.068-0.089] unit increase novel	Illumina [6108953] (imputed)	N
944	chr18	47121315	47121316	rs17798991	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.1	LIPG	rs17798991-A	0.387	7E-6	(Light activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
944	chr18	47126998	47126999	rs28512338	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.1	LIPG	rs28512338-A	NR	4E-7		1.0609	NR	Affymetrix, Illumina [8278136] (imputed)	N
944	chr18	47128368	47128369	rs75490727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs75490727-C	NR	2E-10		0.0319	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
944	chr18	47128368	47128369	rs75490727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs75490727-C	NR	9E-17		0.0435	[0.033-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
944	chr18	47128368	47128369	rs75490727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs75490727-C	NR	7E-21		0.0491	[0.039-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
944	chr18	47131683	47131684	rs7244158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs7244158-C	NR	2E-9		0.0501	[0.034-0.066] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47131683	47131684	rs7244158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs7244158-C	NR	9E-16		0.0698	[0.053-0.087] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47131683	47131684	rs7244158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs7244158-C	NR	1E-18		0.0767	[0.06-0.094] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47132463	47132464	rs11082766	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	18q21.1	LIPG	rs11082766-T	0.2661	7E-7		0.9637	[0.58-1.34] unit increase	Affymetrix [NR] (imputed)	N
944	chr18	47136391	47136392	rs11872886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs11872886-T	NR	2E-25		0.0255	[0.021-0.03] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47136391	47136392	rs11872886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs11872886-T	NR	2E-47		0.037	[0.032-0.042] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47136391	47136392	rs11872886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs11872886-T	NR	6E-65		0.0437	[0.039-0.049] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47144222	47144223	rs4121823	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	18q21.1		rs4121823-T	0.154667	1E-11		0.019	[0.013-0.025] unit increase	NR [7250403] (imputed)	N
944	chr18	47144222	47144223	rs4121823	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	18q21.1	LIPG	rs4121823-?	NR	2E-38		0.01403	[0.012-0.016] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47147523	47147524	rs117687565	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.1	LIPG	rs117687565-C	0.98818	1E-19		0.0826934	[0.065-0.101] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47147523	47147524	rs117687565	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.1	LIPG	rs117687565-C	0.988207	7E-25		0.0967707	[0.078-0.115] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47147745	47147746	rs1105654	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	18q21.1	LIPG	rs1105654-G	0.345091	2E-8		0.038799	[0.025-0.052] unit increase	Affymetrix [9463307] (imputed)	N
944	chr18	47148885	47148886	rs73959582	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	18q21.1	LIPG	rs73959582-?	NR	5E-26		0.01661	[0.013-0.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47148885	47148886	rs73959582	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	18q21.1	LIPG	rs73959582-?	NR	1E-32		0.01854	[0.015-0.022] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47151205	47151206	rs12607340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs12607340-T	NR	7E-11		0.0466	[0.032-0.061] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47151205	47151206	rs12607340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs12607340-T	NR	9E-13		0.0534	[0.039-0.068] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47151205	47151206	rs12607340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs12607340-T	NR	2E-16		0.0618	[0.047-0.076] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47151263	47151264	rs8091178	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18q21.1	LIPG	rs8091178-G	0.551236582884189	1E-7	(G_unclassified_F_Erysipelotrichaceae_HB)	0.291522	[0.18-0.4] unit increase	Illumina [7711310] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	2E-8	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	2E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	4E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	3E-8	(conditioned on 885 SNPs)	0.71	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	2E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47155635	47155636	rs768116521	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	LIPG	rs768116521-?	NR	4E-8	(conditioned on 885 SNPs)	0.72	unit increase	Illumina [15144991] (imputed)	N
944	chr18	47156187	47156188	rs73959590	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	18q21.1	NR	rs73959590-?	NR	1E-21		0.09239	[0.073-0.111] unit decrease novel	Illumina [6108953] (imputed)	N
944	chr18	47158185	47158186	rs10438978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs10438978-T	0.182232	1E-8		0.0304701	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
944	chr18	47158185	47158186	rs10438978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	18q21.1		rs10438978-T	0.182232	2E-12		0.0371785	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
944	chr18	47158185	47158186	rs10438978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs10438978-T	0.182232	2E-16		0.0427801	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158185	47158186	rs10438978	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	18q21.1		rs10438978-?	NR	7E-11		0.0172243	[0.012-0.022] unit increase	NR [6912294] (imputed)	N
944	chr18	47158185	47158186	rs10438978	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	18q21.1		rs10438978-T	0.17	8E-19		1.41	[1.10-1.72] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
944	chr18	47158185	47158186	rs10438978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs10438978-T	NR	3E-13		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47158185	47158186	rs10438978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs10438978-T	0.17	7E-15	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47158185	47158186	rs10438978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs10438978-T	NR	1E-40		0.059	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47158185	47158186	rs10438978	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs10438978-T	0.17	5E-37	(EA)	0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47158185	47158186	rs10438978	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	18q21.1	LIPG	rs10438978-C	0.81	8E-36		0.095	[0.079-0.111] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	4E-52		0.0773799	[0.067-0.087] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	8E-27		0.0564918	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	3E-17		0.0442317	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	8E-22		0.0496365	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	3E-68		0.088023	[0.078-0.098] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	2E-63		0.0845505	[0.075-0.094] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	1E-20		0.0483661	[0.038-0.059] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	5E-23		0.0495152	[0.04-0.059] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	4E-45		0.0733601	[0.063-0.084] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	2E-67		0.0878345	[0.078-0.098] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	2E-72		0.0901306	[0.08-0.1] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	8E-41		0.0700213	[0.06-0.08] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	1E-32		0.0626276	[0.052-0.073] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	6E-43		0.0721067	[0.062-0.082] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181572	2E-22		0.0496313	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	1E-71		0.0901206	[0.08-0.1] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	2E-21		0.051214	[0.041-0.062] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs9304381-C	0.181596	4E-28		0.0589263	[0.048-0.069] unit decrease	NR [11722792] (imputed)	N
944	chr18	47158233	47158234	rs9304381	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	18q21.1	LIPG	rs9304381-?	NR	8E-32		0.01307	[0.011-0.015] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
944	chr18	47158233	47158234	rs9304381	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	18q21.1	NR	rs9304381-T	0.8098	1E-56				Affymetrix, Illumina [at least 2500000] (imputed)	N
944	chr18	47159089	47159090	rs7240405	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.1	RPL17	rs7240405-?	NR	2E-6	(PC 38:2)	0.21228352	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
944	chr18	47159089	47159090	rs7240405	20031538	Heid IM	2008-10-01	Circ Cardiovasc Genet	Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.	HDL cholesterol	Up to 4,274 European ancestry individuals	Up to 15,873 European ancestry individuals	18q21.1	LIPG	rs7240405-A	0.15	5E-10		2.27	[NR] mg/dl decrease	Affymetrix [up to 2557253] (imputed)	N
944	chr18	47160813	47160814	rs7228085	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	18q21.1	LIPG	rs7228085-?	NR	7E-11	(XL-HDL-TG)	0.11	[0.071-0.149] unit increase	Illumina [~ 7700000] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	8E-10		0.0300309	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	8E-84		0.0974937	[0.088-0.107] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-38		0.0619043	[0.053-0.071] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-12		0.0371624	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-76		0.0899673	[0.08-0.1] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	3E-18		0.0464272	[0.036-0.057] unit increase	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	3E-25		0.0549378	[0.045-0.065] unit increase	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs7241918-G	0.177109	6E-16		0.0402647	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-11		0.0325918	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	5E-87		0.100039	[0.09-0.11] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	7E-44		0.0662619	[0.057-0.076] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-10		0.0337291	[0.023-0.044] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-83		0.0946377	[0.085-0.104] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	4E-55		0.0758268	[0.066-0.085] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs7241918-G	0.177109	3E-38		0.0621185	[0.053-0.072] unit increase	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-75		0.0905511	[0.081-0.1] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-30		0.054657	[0.045-0.064] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-58		0.077373	[0.068-0.087] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-11		0.0329865	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	4E-83		0.0963927	[0.087-0.106] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	3E-37		0.0605962	[0.051-0.07] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	6E-9		0.0296288	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	2E-12		0.0370108	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	6E-9		0.0283308	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-65		0.0857055	[0.076-0.096] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	1E-26		0.0512857	[0.042-0.061] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	7E-15		0.0407844	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	8E-53		0.0745348	[0.065-0.084] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	18q21.1		rs7241918-G	0.177109	1E-23		0.0517629	[0.042-0.062] unit increase	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	8E-11		0.0341859	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	3E-68		0.0871239	[0.077-0.097] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	9E-28		0.0522186	[0.043-0.062] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	7E-13		0.0376778	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	18q21.1		rs7241918-G	0.1771	3E-81		0.0945944	[0.085-0.104] unit decrease	NR [11722792] (imputed)	N
944	chr18	47160952	47160953	rs7241918	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	18q21.1	LIPG	rs7241918-G	0.175894	1E-8		0.0156669	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47160952	47160953	rs7241918	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.1	NR	rs7241918-G	0.177797	3E-8		0.014895	[0.0096-0.0202] unit decrease	NR [NR]	N
944	chr18	47160952	47160953	rs7241918	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	18q21.1		rs7241918-T	0.8472	3E-27		0.0168	[0.014-0.02] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
944	chr18	47160952	47160953	rs7241918	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7241918-G	NR	4E-16		0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47160952	47160953	rs7241918	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7241918-G	0.163	2E-16	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47160952	47160953	rs7241918	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7241918-G	NR	1E-40		0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47160952	47160953	rs7241918	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7241918-G	0.163	4E-37	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47160952	47160953	rs7241918	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.1	LIPG	rs7241918-G	0.19	1E-44		0.09	[NR] unit decrease	NR [NR] (imputed)	N
944	chr18	47160952	47160953	rs7241918	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.1	LIPG	rs7241918-G	0.19	4E-18		0.058	[NR] unit decrease	NR [NR] (imputed)	N
944	chr18	47160952	47160953	rs7241918	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	18q21.1	LIPG	rs7241918-G	0.17	3E-49		1.31	[1.11-1.51] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
944	chr18	47160952	47160953	rs7241918	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	18q21.1	LIPG	rs7241918-A	0.17	2E-19		1.94	[1.43-2.45] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
944	chr18	47163556	47163557	rs7234218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	18q21.1		rs7234218-A	0.410335	2E-14		0.0306578	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
944	chr18	47164716	47164717	rs7239867	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7239867-A	NR	2E-15		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47164716	47164717	rs7239867	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7239867-A	0.164	1E-15	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47164716	47164717	rs7239867	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7239867-A	NR	1E-40		0.063	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47164716	47164717	rs7239867	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs7239867-A	0.164	1E-36	(EA)	0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47166693	47166694	rs9947684	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	18q21.1		rs9947684-A	0.345534	3E-11		0.0276606	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
944	chr18	47166693	47166694	rs9947684	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	18q21.1		rs9947684-A	0.345534	1E-11		0.0282504	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
944	chr18	47166693	47166694	rs9947684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	18q21.1		rs9947684-A	NR	4E-10		0.0857104	[0.059-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	2E-45		0.0756204	[0.065-0.086] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	6E-9		0.0309854	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	1E-28		0.0596554	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	4E-14		0.0402944	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	9E-17		0.0446946	[0.034-0.055] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs4939883-T	0.180858	2E-14		0.0409659	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
944	chr18	47167213	47167214	rs4939883	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	18q21.1	NR	rs4939883-?	NR	8E-7		0.6773294	[0.41-0.95] unit increase	Illumina [31978362] (imputed)	N
944	chr18	47167213	47167214	rs4939883	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	18q21.1		rs4939883-T	0.2475	3E-23		0.0135	[0.011-0.016] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
944	chr18	47167213	47167214	rs4939883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs4939883-T	NR	2E-13		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47167213	47167214	rs4939883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs4939883-T	0.168	2E-15	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47167213	47167214	rs4939883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs4939883-T	NR	2E-45		0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47167213	47167214	rs4939883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs4939883-T	0.168	4E-37	(EA)	0.064	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47167213	47167214	rs4939883	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs4939883-T	0.137	2E-6	(Hispanic)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47167213	47167214	rs4939883	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	18q21.1	LIPG	rs4939883-T	0.181	2E-32	(Trans-ethnic initial)	0.0555	[0.046-0.065] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	7E-16	(HDL-C.by.NMR, whole)	1.513	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	6E-14	(APOA1.assay, whole)	2.529	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	5E-13	(HDL-C.by.NMR, fasting)	1.591	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	4E-10	(HDL.large, whole)	0.312	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	2E-8	(HDL-C.assay, fasting)	1.33	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	2E-11	(APOA1.assay, fasting)	2.616	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	1E-9	(HDL.large, fasting)	0.353	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	18q21.1	LIPG	rs4939883-?	NR	1E-9	(HDL-C.assay, whole)	1.238	[NR] unit decrease	Illumina [335603]	N
944	chr18	47167213	47167214	rs4939883	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	18q21.1	LIPG	rs4939883-G	0.83	2E-11		0.1	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
944	chr18	47167213	47167214	rs4939883	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	18q21.1	LIPG	rs4939883-G	0.83	2E-11		0.07	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
944	chr18	47167213	47167214	rs4939883	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	18q21.1	LIPG	rs4939883-T	0.17	7E-15		0.14	[0.10-0.18] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
944	chr18	47171887	47171888	rs8086351	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.1	LIPG	rs8086351-C	0.175793	2E-245		0.0838881	[0.079-0.089] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47171887	47171888	rs8086351	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.1	LIPG	rs8086351-C	0.175966	5E-304		0.0961121	[0.091-0.101] unit decrease	Affymetrix [NR] (imputed)	N
944	chr18	47172282	47172283	rs2187375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs2187375-A	0.177121	4E-24		0.0524746	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
944	chr18	47172282	47172283	rs2187375	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	18q21.1	LIPG	rs2187375-A	0.17	3E-17	(X-03094)	0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
944	chr18	47173180	47173181	rs1943977	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs1943977-A	0.177584	3E-9		0.0314222	[0.021-0.042] unit decrease	NR [11722792] (imputed)	N
944	chr18	47173180	47173181	rs1943977	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs1943977-A	0.177584	8E-31		0.0623412	[0.052-0.073] unit decrease	NR [11722792] (imputed)	N
944	chr18	47176260	47176261	rs6507939	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	18q21.1	LIPG	rs6507939-C	0.84	8E-16	(HDL diameter)	0.11	[0.09-0.13] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
944	chr18	47177868	47177869	rs12458794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs12458794-A	NR	2E-10		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47177868	47177869	rs12458794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs12458794-A	NR	1E-28		0.0319	[0.026-0.038] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47177868	47177869	rs12458794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs12458794-A	NR	3E-39		0.0378	[0.032-0.043] unit increase	Affymetrix [9000000] (imputed)	N
944	chr18	47179515	47179516	rs1943973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs1943973-G	0.150685	7E-34		0.0622277	[0.052-0.072] unit decrease	NR [11722792] (imputed)	N
944	chr18	47179515	47179516	rs1943973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs1943973-G	0.150685	1E-30		0.0589827	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
944	chr18	47179515	47179516	rs1943973	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	18q21.1	LIPG	rs1943973-?	NR	9E-10	(M_HDL_PL)	0.045881156	NR unit decrease	Illumina [609262]	N
944	chr18	47179515	47179516	rs1943973	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	18q21.1	LIPG	rs1943973-?	NR	2E-8	(M_HDL_PL)	0.070629194	NR unit decrease	Illumina [609262]	N
944	chr18	47179515	47179516	rs1943973	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	18q21.1	NR	rs1943973-?	NR	2E-15		0.04347	[0.033-0.054] unit decrease novel	Illumina [6108953] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	5E-17		0.0440368	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	6E-35		0.0651247	[0.055-0.075] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	2E-53		0.0786552	[0.069-0.089] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	5E-28		0.0577905	[0.047-0.068] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178182	9E-27		0.0569029	[0.046-0.067] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178182	7E-22		0.0510402	[0.041-0.061] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	3E-59		0.0842127	[0.074-0.094] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	7E-60		0.087007	[0.077-0.097] unit decrease	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	6E-9		0.0308355	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	2E-21		0.0499878	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs2156552-A	0.178203	1E-21		0.0504944	[0.04-0.061] unit increase	NR [11722792] (imputed)	N
944	chr18	47181667	47181668	rs2156552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	18q21.1		rs2156552-T	NR	3E-194		0.0808	[0.076-0.086] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
944	chr18	47181667	47181668	rs2156552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.1	SMUG1P1	rs2156552-T	0.822614	2E-11		0.019489013	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
944	chr18	47181667	47181668	rs2156552	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	18q21.1	NR	rs2156552-?	NR	3E-6		2.95356	[1.72-4.19] unit increase	Illumina [32003504] (imputed)	N
944	chr18	47181667	47181668	rs2156552	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	18q21.1	NR	rs2156552-?	NR	3E-6		0.9494596	[0.55-1.35] unit increase	Illumina [31978362] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	5E-8				Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-6		0.898	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	6E-106				Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-79	(EA)			Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	1E-26	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	5E-92	(EA)			Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-28	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-121				Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-58		0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	2E-43	(EA)	0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	1E-17	(Asian)	0.016	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	6E-32	(EA)	0.02392	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	1E-45		0.01917	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-T	NR	1E-17	(Asian)	0.0162	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
944	chr18	47181667	47181668	rs2156552	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs2156552-A	NR	3E-18		0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47181667	47181668	rs2156552	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs2156552-A	0.164	2E-17	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47181667	47181668	rs2156552	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs2156552-A	NR	7E-45		0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47181667	47181668	rs2156552	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs2156552-A	0.164	2E-37	(EA)	0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
944	chr18	47181667	47181668	rs2156552	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	18q21.1	LIPG	rs2156552-A	0.178	2E-74	(Trans-ethnic initial)	0.0793	[0.07-0.088] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
944	chr18	47181667	47181668	rs2156552	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	18q21.1	LIPG	rs2156552-T	0.81	2E-12		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
944	chr18	47181667	47181668	rs2156552	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	HDL cholesterol	2,758 European ancestry individuals	18,554 European ancestry individuals	18q21.1	LIPG, ACAA2	rs2156552-A	0.18	2E-7		0.07	[0.05-0.09] unit decrease	Affymetrix [389878]	N
944	chr18	47181667	47181668	rs2156552	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	HDL cholesterol	8,656 European ancestry individuals	11,437 European ancestry individuals	18q21.1	LIPG	rs2156552-T	0.84	6E-12		1.2	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
944	chr18	47182663	47182664	rs1540037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	18q21.1		rs1540037-A	0.221692	2E-28		0.0562353	[0.046-0.066] unit increase	NR [11722792] (imputed)	N
944	chr18	47182663	47182664	rs1540037	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	18q21.1		rs1540037-A	0.221692	5E-20		0.0463364	[0.036-0.056] unit increase	NR [11722792] (imputed)	N
944	chr18	47183793	47183794	rs11659469	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	18q21.1		rs11659469-?	NR	5E-6	(mucinous_all)	1.5		Illumina [11595112] (imputed)	N
945	chr18	47193942	47193943	rs34770920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.1	NR	rs34770920-C	0.623854	1E-10		0.012533	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
945	chr18	47193942	47193943	rs34770920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18q21.1	NR	rs34770920-C	0.624387	2E-10		0.012284	[0.0085-0.0161] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
945	chr18	47193942	47193943	rs34770920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.1		rs34770920-?	NR	1E-8				NR [~ 8900000] (imputed)	N
945	chr18	47196231	47196232	rs9304383	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18q21.1	NR	rs9304383-T		2E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
945	chr18	47196869	47196870	rs80175721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs80175721-A	0.989395	2E-16		0.146712	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
945	chr18	47196869	47196870	rs80175721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	18q21.1		rs80175721-A	0.989395	2E-15		0.141889	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
945	chr18	47196869	47196870	rs80175721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs80175721-G	NR	5E-40		0.1545	[0.13-0.18] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47196869	47196870	rs80175721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs80175721-G	NR	1E-88		0.243	[0.22-0.27] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47196869	47196870	rs80175721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs80175721-G	NR	6E-122		0.2869	[0.26-0.31] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47200118	47200119	rs117108801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs117108801-A	NR	6E-12		0.0471	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47200118	47200119	rs117108801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs117108801-A	NR	5E-15		0.0537	[0.04-0.067] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47203407	47203408	rs11874381	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	18q21.1	LIPG	rs11874381-A	NR	1E-15				NR [2501543] (imputed)	N
945	chr18	47203579	47203579	rs763898632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs763898632-TA	0.97999	2E-8		0.078031	[0.051-0.105] unit increase	NR [11722792] (imputed)	N
945	chr18	47203579	47203579	rs763898632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	18q21.1		rs763898632-TA	0.97999	2E-8		0.0833691	[0.054-0.113] unit increase	NR [11722792] (imputed)	N
945	chr18	47203579	47203579	rs763898632	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	18q21.1		rs763898632-TA	0.97999	6E-9		0.0818138	[0.054-0.109] unit increase	NR [11722792] (imputed)	N
945	chr18	47205828	47205829	rs9949052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.1		rs9949052-C	0.446594	1E-9		0.013718976	[0.0093-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
945	chr18	47206345	47206346	rs8093567	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	18q21.1	NR	rs8093567-T	0.84	2E-6		2.01	[1.51-2.69]	Illumina [17125421] (imputed)	N
945	chr18	47207205	47207205	rs55987145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	18q21.1		rs55987145-A	0.61344	1E-10		0.0272854	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
945	chr18	47209124	47209125	rs12607275	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	18q21.1	NR	rs12607275-?	NR	4E-11	(conditional on round 3)	0.03514981	[0.025-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
945	chr18	47209142	47209143	rs11660468	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	18q21.1		rs11660468-T	0.3587	1E-8		0.0065	[0.0043-0.0087] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
945	chr18	47220557	47220558	rs117198528	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors in depression	6,348 European ancestry responder cases, 3,340 European ancestry non-responder cases	NA	18q21.1	LIPG, ACAA2	rs117198528-?		9E-7		1.823	[1.437-2.313]	Illumina [~ 12000000] (imputed)	N
945	chr18	47226643	47226644	rs11082774	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs11082774-G	NR	1E-12		0.0342	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr18	47226643	47226644	rs11082774	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs11082774-G	NR	4E-15		0.0379	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr18	47228942	47228943	rs12965067	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	18q21.1	LIPG	rs12965067-?	NR	3E-24		0.0102	[0.0082-0.0122] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
945	chr18	47228942	47228943	rs12965067	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	18q21.1	LIPG	rs12965067-?	NR	1E-26		0.01012	[0.0081-0.0121] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
945	chr18	47229716	47229717	rs9964304	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	18q21.1	intergenic	rs9964304-A	0.716	1E-9		0.0382	[0.026-0.051] unit decrease	Affymetrix [at least 7947838] (imputed)	N
945	chr18	47229716	47229717	rs9964304	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	18q21.1	intergenic	rs9964304-A	0.714	1E-9		0.043	[0.029-0.057] unit decrease	Affymetrix [7947838] (imputed)	N
945	chr18	47243911	47243912	rs6507945	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	18q21.1		rs6507945-A	0.448812	5E-10		0.0253578	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
945	chr18	47245224	47245225	rs144081173	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	18q21.1	NR	rs144081173-?	NR	8E-6		0.09376	[0.053-0.135] unit increase	Affymetrix [9658292] (imputed)	N
945	chr18	47253903	47253904	rs9947182	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	18q21.1	ACAA2	rs9947182-T	NR	1E-6		1.37	[1.21-1.55]	Illumina [7436415] (imputed)	N
945	chr18	47258694	47258695	rs4939890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs4939890-G	NR	7E-23		0.0409	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47258694	47258695	rs4939890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs4939890-G	NR	2E-58		0.07	[0.062-0.078] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47258694	47258695	rs4939890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs4939890-G	NR	9E-74		0.0792	[0.071-0.088] unit increase	Affymetrix [9000000] (imputed)	N
945	chr18	47261613	47261614	rs9965695	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	18q21.1	DYM, LIPG, ACAA2, MYO5B	rs9965695-?		2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
945	chr18	47261613	47261614	rs9965695	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	18q21.1	DYM, LIPG, ACAA2, MYO5B	rs9965695-T	0.9809	8E-6	(African)	13.32	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
945	chr18	47267945	47267946	rs10438979	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	18q21.1	ACAA2	rs10438979-A	0.96	2E-9	(MCP-1)	230.358	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
945	chr18	47280409	47280410	rs9964067	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs9964067-T	NR	7E-6		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr18	47280409	47280410	rs9964067	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs9964067-T	0.675	4E-6	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr18	47280409	47280410	rs9964067	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs9964067-T	NR	2E-6		0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr18	47280409	47280410	rs9964067	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	18q21.1	NR	rs9964067-T	0.675	1E-6	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
945	chr18	47289048	47289049	rs75116816	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	18q21.1	ACAA2	rs75116816-C	0.79	2E-6	(Right HG area)	7.99	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
945	chr18	47309539	47309540	rs75276171	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	18q21.1	NR	rs75276171-G	0.0611	4E-6		0.2797	[0.16-0.4] unit increase	Illumina [7305641] (imputed)	N
946	chr18	47328028	47328029	rs617619	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.1	NR	rs617619-?	NR	2E-6				Affymetrix [NR]	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	2E-8	(conditioned on 885 SNPs)	0.68	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	5E-7		0.603	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	2E-9		0.72	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	2E-10	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	7E-10	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	1E-9	(conditioned on 885 SNPs)	0.73	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	3E-10	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in very large HDL	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47343409	47343410	rs538509310	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	LIPG, ACAA2	rs538509310-?	NR	2E-10	(conditioned on 885 SNPs)	0.79	unit increase	Illumina [15144991] (imputed)	N
946	chr18	47348535	47348536	rs145342185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs145342185-C	NR	1E-12		0.0471	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr18	47348535	47348536	rs145342185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs145342185-C	NR	5E-16		0.054	[0.041-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr18	47361449	47361450	rs17726969	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs17726969-C	NR	4E-9		0.0611	[0.041-0.081] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47391024	47391025	rs12965607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs12965607-G	NR	3E-10		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
946	chr18	47391024	47391025	rs12965607	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	18q21.1	NR	rs12965607-T		3E-16		0.13	[0.091-0.169] unit increase	NR [NR]	N
946	chr18	47391024	47391025	rs12965607	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q21.1	DYM, LIPG, ACAA2, MYO5B	rs12965607-?		4E-60				Affymetrix, Illumina [NR] (imputed)	N
946	chr18	47391024	47391025	rs12965607	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	18q21.1	MYO5B	rs12965607-T	0.8573	2E-12		7.073	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
946	chr18	47391024	47391025	rs12965607	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	18q21.1	NR	rs12965607-T	0.8539	8E-12		0.0678	[0.048-0.087] unit increase	Illumina [~ 10600000] (imputed)	N
946	chr18	47391024	47391025	rs12965607	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	18q21.1	MYO5B	rs12965607-?	NR	2E-16		1.0893246	[1.07-1.11]	Illumina [13762925] (imputed)	N
946	chr18	47429021	47429022	rs2298624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs2298624-T	NR	2E-10		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47429021	47429022	rs2298624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs2298624-T	NR	5E-19		0.0327	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47429021	47429022	rs2298624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs2298624-T	NR	1E-22		0.036	[0.029-0.043] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47429021	47429022	rs2298624	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.1	MYO5B	rs2298624-C	0.867469	1E-26		0.0300608	[0.025-0.036] unit decrease	Affymetrix [NR] (imputed)	N
946	chr18	47429021	47429022	rs2298624	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.1	MYO5B	rs2298624-C	0.867527	2E-28		0.0319773	[0.026-0.038] unit decrease	Affymetrix [NR] (imputed)	N
946	chr18	47431495	47431496	rs17658306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs17658306-T	NR	2E-12		0.0396	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47431495	47431496	rs17658306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs17658306-T	NR	1E-34		0.0718	[0.06-0.083] unit increase	Affymetrix [9000000] (imputed)	N
946	chr18	47431495	47431496	rs17658306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs17658306-T	NR	2E-38		0.076	[0.064-0.088] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47457558	47457559	rs1787328	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	18q21.1	LIPG	rs1787328-?	NR	3E-14		0.006915	[0.0049-0.0089] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
947	chr18	47464422	47464423	rs1790796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs1790796-T	NR	1E-9		0.02	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47464422	47464423	rs1790796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs1790796-T	NR	2E-27		0.0374	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47464422	47464423	rs1790796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs1790796-T	NR	3E-35		0.0427	[0.036-0.049] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	4E-8	(conditioned on 885 SNPs)	0.67	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	8E-7		0.6	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	1E-8		0.695	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	6E-10	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	5E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	3E-9	(conditioned on 885 SNPs)	0.72	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	8E-10	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Cholesterol ester levels in very large HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47467365	47467366	rs545804325	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs545804325-?	NR	2E-9	(conditioned on 885 SNPs)	0.75	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47477826	47477827	rs1787287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs1787287-A	NR	2E-11		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr18	47477826	47477827	rs1787287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs1787287-A	NR	3E-13		0.0251	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr18	47494672	47494673	rs117840724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs117840724-A	NR	2E-10		0.0614	[0.043-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	6E-9	(conditioned on 885 SNPs)	0.8	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	3E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	2E-8	(conditioned on 885 SNPs)	0.69	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	4E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47535777	47535778	rs535211063	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	RN5S457	rs535211063-?	NR	8E-9	(conditioned on 885 SNPs)	0.73	unit increase	Illumina [15144991] (imputed)	N
947	chr18	47552801	47552802	rs72913861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs72913861-A	NR	3E-14		0.0265	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47552801	47552802	rs72913861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs72913861-A	NR	3E-18		0.0305	[0.024-0.037] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47560839	47560840	rs12965511	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs12965511-A	NR	3E-9		0.0342	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
947	chr18	47566646	47566647	rs78626055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs78626055-G	NR	3E-11		0.0486	[0.034-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	2E-6		0.589	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	2E-8		0.686	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	3E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	2E-8	(conditioned on 885 SNPs)	0.69	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	4E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47583415	47583416	rs146524044	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs146524044-?	NR	8E-9	(conditioned on 885 SNPs)	0.73	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47595541	47595541	rs112721433	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	18q21.1	NR	rs112721433-?	NR	8E-6		1.774	[0.76-2.79] unit increase	Illumina [at least 560000] (imputed)	N
948	chr18	47609370	47609371	rs78441534	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	18q21.1	MYO5B	rs78441534-T	3.0E-4	5E-8	(EA)	5.462722	[NR] unit increase	Illumina [9039731] (imputed)	N
948	chr18	47635906	47635907	rs12967053	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	18q21.1	NR	rs12967053-T	NR	5E-6		0.156	[0.091-0.221] unit decrease	Illumina [6319684] (imputed)	N
948	chr18	47637611	47637612	rs76967376	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	228 African American ancestry cases, 2,480 African American ancestry controls	NA	18q21.1	MYO5B	rs76967376-A	0.11	6E-8		2.65	[1.87-3.78]	Affymetrix, Illumina [NR] (imputed)	N
948	chr18	47682224	47682225	rs1567526	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.1	MYO5B	rs1567526-G	NR	3E-6		1.0565	NR	Affymetrix, Illumina [8278136] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	2E-6		0.587	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	2E-8		0.685	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	3E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	1E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	2E-8	(conditioned on 885 SNPs)	0.69	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	4E-9	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47685885	47685886	rs541889526	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Apolipoprotein A1 levels	8,372 Finnish ancestry males	NA	18q21.1	MYO5B	rs541889526-?	NR	8E-9	(conditioned on 885 SNPs)	0.73	unit increase	Illumina [15144991] (imputed)	N
948	chr18	47693129	47693130	rs79204427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs79204427-C	NR	1E-18		0.0942	[0.073-0.115] unit increase	Affymetrix [9000000] (imputed)	N
948	chr18	47693129	47693130	rs79204427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs79204427-C	NR	6E-38		0.1437	[0.12-0.17] unit increase	Affymetrix [9000000] (imputed)	N
948	chr18	47693129	47693130	rs79204427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs79204427-C	NR	1E-51		0.1694	[0.15-0.19] unit increase	Affymetrix [9000000] (imputed)	N
949	chr18	47759795	47759796	rs75514098	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	18q21.1	CCDC11	rs75514098-A	NR	5E-7		1.0498259	[0.63-1.47] unit increase	Illumina [> 6200000] (imputed)	N
949	chr18	47811304	47811305	rs2276366	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs2276366-G	NR	2E-11		0.0218	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
949	chr18	47812586	47812587	rs11555886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.1		rs11555886-?	NR	1E-8				NR [~ 8900000] (imputed)	N
950	chr18	47843533	47843534	rs1036935	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	18q21.1	MBD1, CXXC1	rs1036935-A	0.22	3E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [> 10000000] (imputed)	N
950	chr18	47913307	47913308	rs151159962	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	SKA1	rs151159962-?	NR	4E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
950	chr18	47913307	47913308	rs151159962	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	SKA1	rs151159962-?	NR	2E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
950	chr18	47913307	47913308	rs151159962	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	SKA1	rs151159962-?	NR	2E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
950	chr18	47915321	47915322	rs139236138	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	18q21.1	SKA1	rs139236138-G	NR	5E-6		0.10917	[0.062-0.156] unit increase	Illumina [13520550] (imputed)	N
950	chr18	47922510	47922511	rs77857087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs77857087-T	NR	2E-11		0.0385	[0.027-0.05] unit increase	Affymetrix [9000000] (imputed)	N
950	chr18	47922510	47922511	rs77857087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs77857087-T	NR	1E-15		0.046	[0.035-0.057] unit increase	Affymetrix [9000000] (imputed)	N
951	chr18	47972421	47972422	rs138572223	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	AC105227.1	rs138572223-?	NR	4E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
951	chr18	47972421	47972422	rs138572223	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	AC105227.1	rs138572223-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
951	chr18	47972421	47972422	rs138572223	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	AC105227.1	rs138572223-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
951	chr18	47972801	47972802	rs79469230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.1	NR	rs79469230-C	NR	2E-9		0.065	[0.044-0.086] unit increase	Affymetrix [9000000] (imputed)	N
951	chr18	47972801	47972802	rs79469230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.1	NR	rs79469230-C	NR	1E-20		0.1055	[0.083-0.128] unit increase	Affymetrix [9000000] (imputed)	N
951	chr18	47972801	47972802	rs79469230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	18q21.1	NR	rs79469230-C	NR	1E-25		0.1194	[0.097-0.142] unit increase	Affymetrix [9000000] (imputed)	N
951	chr18	48008439	48008440	rs9960150	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	18q21.1	intergenic	rs9960150-?		5E-6				NR [~ 3000000] (imputed)	N
951	chr18	48016886	48016887	rs77990856	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q21.1	NR	rs77990856-?	NR	5E-11	(AA)	1.9734	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
951	chr18	48016886	48016887	rs77990856	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18q21.1	NR	rs77990856-?	NR	4E-11	(AA)	1.7919	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
951	chr18	48028414	48028415	rs139368489	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium HDL	8,372 Finnish ancestry males	NA	18q21.1	MAPK4	rs139368489-?	NR	4E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
951	chr18	48028414	48028415	rs139368489	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	18q21.1	MAPK4	rs139368489-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
951	chr18	48028414	48028415	rs139368489	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	18q21.1	MAPK4	rs139368489-?	NR	3E-8	(conditioned on 885 SNPs)	0.7	unit increase	Illumina [15144991] (imputed)	N
952	chr18	48133240	48133241	rs61148001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.1		rs61148001-?	NR	1E-13				NR [~ 8900000] (imputed)	N
952	chr18	48138374	48138375	rs58000211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	18q21.1		rs58000211-G	NR	4E-10		0.0132	[0.0091-0.0173] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
952	chr18	48140237	48140238	rs4599004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	18q21.1		rs4599004-T	NR	6E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
952	chr18	48142821	48142822	rs745822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q21.1		rs745822-G	NR	3E-13		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
952	chr18	48142821	48142822	rs745822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q21.1	NR	rs745822-G	0.375667	3E-17		0.016402	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
952	chr18	48142853	48142854	rs745821	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	18q21.1	MAPK4	rs745821-T	0.76	1E-9		0.189	[0.13-0.25] unit increase	Affymetrix [~ 9800000] (imputed)	N
952	chr18	48144753	48144754	rs8084255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.1		rs8084255-T	NR	3E-21		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
952	chr18	48144753	48144754	rs8084255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	18q21.1		rs8084255-T	0.36468	1E-8		0.0201366	[0.013-0.027] unit increase	Illumina [13479091] (imputed)	N
952	chr18	48144753	48144754	rs8084255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q21.1		rs8084255-T	NR	5E-17		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
952	chr18	48144753	48144754	rs8084255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.1	MAPK4	rs8084255-T	0.37324	3E-21		0.021686265	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
952	chr18	48144753	48144754	rs8084255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.1	MAPK4	rs8084255-T	0.373218	9E-21		0.021483505	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
952	chr18	48144753	48144754	rs8084255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.1	NR	rs8084255-T	0.375635	1E-25		0.019947	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
952	chr18	48144753	48144754	rs8084255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.1	NR	rs8084255-T	0.375332	1E-26		0.021251	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
952	chr18	48144753	48144754	rs8084255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs8084255-T	0.372809	9E-18				Affymetrix, Illumina [23467995] (imputed)	N
952	chr18	48147121	48147122	rs1025685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.1	MAPK4	rs1025685-T	0.373532	4E-11		0.015286134	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
952	chr18	48147126	48147127	rs1025686	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q21.1	MAPK4	rs1025686-G	0.7546	4E-8		0.214	[0.14-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
952	chr18	48147792	48147793	rs1025687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs1025687-C	0.62446	4E-29				Affymetrix, Illumina [24649327] (imputed)	N
952	chr18	48147792	48147793	rs1025687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.1	NR	rs1025687-C	0.623998	1E-26				Affymetrix, Illumina [23114412] (imputed)	N
952	chr18	48147792	48147793	rs1025687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	18q21.1	MAPK4	rs1025687-C	0.6252	2E-9		0.022375	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
952	chr18	48147792	48147793	rs1025687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	18q21.1	MAPK4	rs1025687-C	0.6253	1E-9		0.02282978	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
952	chr18	48147792	48147793	rs1025687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	18q21.1	MAPK4	rs1025687-C	0.6252	2E-9		0.02233365	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
952	chr18	48147875	48147876	rs1025688	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	18q21.1		rs1025688-G	0.627	2E-11				Affymetrix [10369434] (imputed)	N
952	chr18	48147875	48147876	rs1025688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.1		rs1025688-?	NR	2E-19				NR [~ 8900000] (imputed)	N
952	chr18	48147875	48147876	rs1025688	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	18q21.1	MAPK4	rs1025688-A	0.3745	4E-10		0.0233885	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
952	chr18	48147875	48147876	rs1025688	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	18q21.1	MAPK4	rs1025688-A	0.3744	4E-10		0.0233293	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
952	chr18	48184677	48184678	rs59699754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.1	MAPK4	rs59699754-C	NR	3E-8		0.02423	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
952	chr18	48184677	48184678	rs59699754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q21.1	MAPK4	rs59699754-C	NR	4E-8		0.0239986	[0.015-0.033] unit decrease	Affymetrix [319769] (imputed)	N
952	chr18	48213036	48213037	rs79466160	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	18q21.1	NR	rs79466160-G	0.035	1E-6	(Bray-Curtis metric)	4.6960936	NR z-score increase	Illumina [5293637] (imputed)	N
953	chr18	48272635	48272636	rs57954239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.2		rs57954239-?	NR	4E-12				NR [~ 8900000] (imputed)	N
953	chr18	48277004	48277005	rs60292764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	18q21.2		rs60292764-G	NR	5E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
953	chr18	48277400	48277401	rs12967796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18q21.2		rs12967796-C	NR	6E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
953	chr18	48283948	48283949	rs36010659	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q21.2	MAPK4, MRO	rs36010659-T		3E-7		0.281	unit increase	Affymetrix [at least 2696785] (imputed)	N
953	chr18	48283948	48283949	rs36010659	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	18q21.2	MAPK4, MRO	rs36010659-T		9E-6	(EA)	0.258	unit increase	Affymetrix [at least 2696785] (imputed)	N
953	chr18	48283948	48283949	rs36010659	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q21.2	MAPK4, MRO	rs36010659-T		4E-12		0.254	unit increase	Affymetrix [at least 2696785] (imputed)	N
953	chr18	48317158	48317159	rs2586731	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q21.2	MAPK4, MRO	rs2586731-C	0.008	1E-6		6.67	[2.75-16.17]	Illumina [1556551]	N
953	chr18	48324483	48324484	rs17663205	33976257	Yusuf I	2021-05-11	Sci Rep	Genetic risk factors for colorectal cancer in multiethnic Indonesians.	Colorectal cancer	89 Indonesian cases, 84 Indonesian controls	NA	18q21.2	MRO	rs17663205-?	NR	8E-6		0.089	[-0.9694-1.1474]	Affymetrix [524765] (imputed)	N
953	chr18	48342475	48342476	rs2586771	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.2	ME2	rs2586771-?	NR	6E-6	(DAG 34:1)	0.20155443	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
954	chr18	48366936	48366937	rs2847574	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	21,347 Hispanic or Latin American individuals	NA	18q21.2		rs2847574-A	0.9881	2E-8		0.2699	[0.18-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
954	chr18	48378233	48378234	rs732528	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	18q21.2	ME2	rs732528-?	NR	7E-6		0.111	[NR] unit decrease	Illumina [478011]	N
954	chr18	48392549	48392550	rs584087	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.2	MRO	rs584087-?	NR	6E-6	(SM 24:1)	0.15299696	[0.087-0.219] unit increase	Affymetrix [at least 2500000] (imputed)	N
954	chr18	48402337	48402338	rs2665558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.2	ME2	rs2665558-C	0.54797	4E-9		0.013127227	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr18	48403559	48403560	rs2850542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q21.2	NR	rs2850542-T	0.556342	7E-11		0.013206	[0.0092-0.0172] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
954	chr18	48403559	48403560	rs2850542	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Pneumococcal meningitis	732 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	18q21.2	ME2	rs2850542-?	NR	8E-8		1.5384616	NR	Illumina [6800000] (imputed)	N
954	chr18	48481307	48481308	rs637716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.2	Y_RNA	rs637716-A	0.589053	4E-10		0.0141364345	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr18	48481750	48481751	rs12958467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs12958467-T	0.368595	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
955	chr18	48514394	48514395	rs8088712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.2		rs8088712-?	NR	6E-10				NR [~ 8900000] (imputed)	N
955	chr18	48520544	48520545	rs56130935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q21.2		rs56130935-G	NR	1E-10		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
955	chr18	48524160	48524161	rs9807334	25616667	Goris A	2015-01-22	Brain	Genetic variants are major determinants of CSF antibody levels in multiple sclerosis.	Oligoclonal band status in multiple sclerosis	2,232 European ancestry OCB positive individuals, 275 European ancestry OCB negative individuals, 439 OCB positive individuals, 80 OCB negative individuals	3,026 OCB positive individuals, 452 OCB negative individuals	18q21.2	ELAC1, SMAD4	rs9807334-?	NR	8E-7		1.52	[1.28-1.79]	NR [485522]	N
955	chr18	48524160	48524161	rs9807334	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	18q21.2	ELAC1	rs9807334-A		2E-7	(AA)			Illumina [NR]	N
955	chr18	48554593	48554594	rs150912768	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Hippocampal volume	2,643 Korean ancestry individuals	NA	18q21.2		rs150912768-T	0.01	7E-7	(adjusted for APOE genotype)	0.45	[0.27-0.63] unit decrease	NR [3930740] (imputed)	N
955	chr18	48567625	48567626	rs12968012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	18q21.2		rs12968012-?	NR	6E-10				NR [~ 8900000] (imputed)	N
955	chr18	48581917	48581918	rs12453988	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	18q21.2	SMAD4	rs12453988-T	0.37	2E-9				NR [> 9500000] (imputed)	N
955	chr18	48601339	48601340	rs1942094	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	18q21.2	NR	rs1942094-G	0.3759	7E-9		1.036	[1.024-1.048]	Affymetrix [15688218] (imputed)	N
956	chr18	48647639	48647640	rs1893380	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	18q21.2	SMAD4, MEX3C	rs1893380-C	0.378	5E-6		1.047	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
956	chr18	48647639	48647640	rs1893380	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	18q21.2	SMAD4, MEX3C	rs1893380-?	NR	4E-13		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
956	chr18	48647639	48647640	rs1893380	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	18q21.2	SMAD4, MEX3C	rs1893380-C	NR	6E-8		1.038	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
956	chr18	48679149	48679150	rs12458093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q21.2	intergenic	rs12458093-G	0.4794	4E-9		0.02239246	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr18	48679149	48679150	rs12458093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	18q21.2	intergenic	rs12458093-G	0.4794	2E-9		0.02285713	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr18	48679521	48679522	rs9963878	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	18q21.2	MEX3C	rs9963878-C	0.085	2E-8		1.07	[1.04-1.09]	Illumina [34740186] (imputed)	N
956	chr18	48683588	48683589	rs8087969	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	18q21.2	SRSF10P1	rs8087969-T		5E-6		0.0645	[0.037-0.092] unit decrease	Illumina [NR]	N
956	chr18	48683588	48683589	rs8087969	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	18q21.2	MEX3C	rs8087969-T	0.5496	1E-8		0.0578	[0.038-0.078] unit decrease	NR [7784415] (imputed)	N
956	chr18	48685444	48685445	rs17664049	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	18q21.2		rs17664049-T	0.01307	4E-8		0.6608	[0.43-0.9] unit decrease	Illumina [17945888] (imputed)	N
956	chr18	48690618	48690619	rs7230711	22658931	Pajewski NM	2012-05-30	Vaccine	A genome-wide association study of host genetic determinants of the antibody response to Anthrax Vaccine Adsorbed.	Immune response to anthrax vaccine	726 European ancestry individuals	NA	18q21.2	SMAD4, MEX3C	rs7230711-C	NR	1E-6		0.162	[0.097-0.227] unit decrease	Affymetrix [736996]	N
956	chr18	48699257	48699258	rs8087213	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.2	SMAD4	rs8087213-?	NR	5E-6	(deoxycholate)	3.8087823	[2.18-5.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
956	chr18	48708547	48708548	rs8088085	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	18q21.2	MEX3C	rs8088085-A	0.535	5E-8		1.04	[1.02-1.05]	Illumina [34740186] (imputed)	N
956	chr18	48708547	48708548	rs8088085	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	18q21.2	MEX3C	rs8088085-A	0.57	5E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 12149979] (imputed)	N
956	chr18	48713039	48713040	rs8096445	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	18q21.2	MEX3C	rs8096445-A		9E-9	(AA)			Illumina [NR]	N
956	chr18	48731234	48731235	rs113537119	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MEX3C	rs113537119-?	NR	2E-9	(female)	2.55684	[NR] unit increase	Affymetrix [NR] (imputed)	N
956	chr18	48738644	48738645	rs57976196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs57976196-A	0.4439	3E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr18	48743641	48743642	rs16952939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs16952939-A	0.4526	4E-10	(MTAG)	0.0082	[0.0057-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr18	48744149	48744150	rs1941961	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs1941961-A	0.4662	1E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
957	chr18	48779672	48779673	rs62092949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs62092949-T	0.4856	5E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
957	chr18	48784026	48784027	rs8090527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs8090527-C	0.509346	6E-12				Affymetrix, Illumina [24588908] (imputed)	N
957	chr18	48792828	48792829	rs72915163	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	18q21.2	U1	rs72915163-T	0.253582	3E-9		0.054368548	[0.036-0.072] unit increase	Affymetrix [7288503] (imputed)	N
957	chr18	48792828	48792829	rs72915163	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	18q21.2	U1	rs72915163-T	0.254784	1E-9		0.057151265	[0.039-0.075] unit increase	Affymetrix [7288503] (imputed)	N
957	chr18	48792828	48792829	rs72915163	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	18q21.2	U1	rs72915163-T	0.255546	3E-12		0.048985954	[0.035-0.063] unit increase	Affymetrix [7288503] (imputed)	N
957	chr18	48792828	48792829	rs72915163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18q21.2		rs72915163-?	NR	1E-8				NR [~ 8900000] (imputed)	N
957	chr18	48798334	48798335	rs7243072	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	18q21.2	MEX3C, LOC100287225	rs7243072-A	0.42	8E-7	(EA)	0.32	[0.2-0.44] unit increase	Illumina [up to 13042663] (imputed)	N
957	chr18	48799990	48799991	rs11876341	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q21.2	MEX3C	rs11876341-A	0.7007	3E-16		0.2453	[0.19-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
957	chr18	48799990	48799991	rs11876341	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q21.2	MEX3C	rs11876341-A	0.6917	2E-16		0.2225	[0.17-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
957	chr18	48804063	48804064	rs72915181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	18q21.2		rs72915181-T	NR	9E-9		0.0353	[0.023-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
957	chr18	48873085	48873086	rs4574018	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01630	rs4574018-?	NR	7E-13	(male)	3.47815	[NR] unit decrease	Affymetrix [NR] (imputed)	N
958	chr18	48897508	48897509	rs77947762	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.2	MEX3C	rs77947762-G	0.979323	3E-8		0.0423364	[0.027-0.057] unit decrease	Affymetrix [NR] (imputed)	N
958	chr18	48917637	48917638	rs321901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	18q21.2		rs321901-C	NR	3E-8		0.0476	[0.031-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
958	chr18	48937069	48937070	rs141789957	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	18q21.2	NR	rs141789957-?	NR	6E-6		0.715725	[0.41-1.02] unit increase	NR [13958389] (imputed)	N
958	chr18	48970113	48970113	rs71173313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q21.2	RP11-267C16.1	rs71173313-GCA	0.219273	1E-10		0.017829264	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr18	48970113	48970113	rs71173313	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.2	NR	rs71173313-I	0.220042	2E-12		0.01768	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
958	chr18	48970131	48970131	rs398032829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.2		rs398032829-GCA	NR	3E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
958	chr18	48970650	48970651	rs34654942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.2	RP11-267C16.1	rs34654942-A	0.231977	1E-12		0.019089283	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr18	48985792	48985793	rs7236902	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q21.2		rs7236902-?	NR	1E-8				NR [~ 8900000] (imputed)	N
958	chr18	48991890	48991891	rs7241264	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.2	NR	rs7241264-A	0.290664	4E-18		0.0295677	[0.023-0.036] unit increase	NR [19129689] (imputed)	N
959	chr18	49139637	49139638	rs75302947	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	18q21.2	NR	rs75302947-?	NR	7E-8		0.116316	[0.074-0.159] unit decrease	NR [13958389] (imputed)	N
960	chr18	49190643	49190644	rs1619249	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Folding of antihelix	4,919 Latin American individuals	NA	18q21.2	LOC100287225	rs1619249-A	0.81	1E-8		0.091	unit increase	Illumina [671038]	N
960	chr18	49190643	49190644	rs1619249	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	18q21.2	LOC100287225	rs1619249-A	0.81	4E-8				Illumina [671038]	N
960	chr18	49274564	49274565	rs11082886	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	18q21.2	NR	rs11082886-A	0.77	3E-6	(AA)	4.41	[2.63-6.19] bpm decrease	Illumina [at least 1100000] (imputed)	N
961	chr18	49363376	49363377	rs186728352	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	18q21.2	NR	rs186728352-C	0.011	3E-6		5.09	[2.57-10.08]	Illumina [7959153] (imputed)	N
961	chr18	49404963	49404964	rs1351435	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.2	LOC100287225	rs1351435-A	0.0050	5E-6	(Birth weight )	0.04	[NR] kg increase	Illumina [899892]	N
962	chr18	49492656	49492657	rs76780091	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs76780091-C	0.01394	6E-9	(FDXR)	0.03123	NR unit increase	Illumina [1671387] (imputed)	N
962	chr18	49503009	49503010	rs55940710	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	18q21.2	LOC105372120, LOC105372121	rs55940710-T	0.222	2E-6		0.067	[0.04-0.094] unit increase	Illumina [5299861] (imputed)	N
963	chr18	49670154	49670155	rs117962699	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	18q21.2		rs117962699-G	NR	2E-8		0.372	[0.24-0.5] unit increase	Affymetrix [509886] (imputed)	N
964	chr18	49708959	49708960	rs2879414	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.2	MEX3C	rs2879414-?	NR	5E-6	(betaine)	0.15259269	[0.087-0.218] unit decrease	Affymetrix [at least 2500000] (imputed)	N
965	chr18	49865270	49865271	rs17753970	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	18q21.2	RP11-25O3.1	rs17753970-A	0.44	1E-6	(female)	0.0765	[0.046-0.107] unit decrease	Illumina [6380737] (imputed)	N
965	chr18	49874514	49874515	rs8083764	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q21.2	NR	rs8083764-T	0.306171	8E-9	(Conditioned on chr18:50863861, chr18:49967811)	0.015951717	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
965	chr18	49884996	49884997	rs17669415	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q21.2	DCC	rs17669415-C	0.6842	1E-10		0.01391182	[0.0097-0.0181] unit increase	Affymetrix [11514654] (imputed)	N
965	chr18	49920283	49920284	rs8094822	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	18q21.2	DCC	rs8094822-T	0.183254286	3E-6		0.166363	[0.097-0.236] unit decrease	Illumina [6952813] (imputed)	N
965	chr18	49929376	49929377	rs141670172	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	18q21.2	DCC	rs141670172-T	NR	7E-6		0.257413	[0.15-0.37] unit decrease	Illumina [13520550] (imputed)	N
965	chr18	49935806	49935807	rs28698732	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	3E-9				NR [NR]	N
965	chr18	49935806	49935807	rs28698732	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	2E-9				NR [NR]	N
965	chr18	49935806	49935807	rs28698732	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	3E-9				NR [NR]	N
965	chr18	49935806	49935807	rs28698732	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	2E-9				NR [NR]	N
965	chr18	49935806	49935807	rs28698732	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	2E-9				NR [NR]	N
965	chr18	49935806	49935807	rs28698732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q21.2		rs28698732-?	NR	3E-8				NR [~ 8900000] (imputed)	N
966	chr18	49940972	49940973	rs9956738	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	18q21.2	NR	rs9956738-?	0.01	4E-7		2.472	[NR]	Illumina [1468075]	N
966	chr18	49947294	49947295	rs17748074	28317148	Campo C	2017-01-01	Hematol Oncol	Bortezomib-induced peripheral neuropathy: A genome-wide association study on multiple myeloma patients.	Bortezomib-induced peripheral neuropathy in multiple myeloma	102 European ancestry cases and 544 European ancestry controls.	NR	18q21.2	DCC	rs17748074-A	NR	9E-6		1.96	[1.45-2.65]	Illumina [NR] (imputed)	N
966	chr18	49957254	49957255	rs2339345	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	18q21.2	DCC	rs2339345-?		8E-6	(MCRI)	0.25	[0.13-0.37] unit decrease	Illumina [693128]	N
966	chr18	49966317	49966318	rs1145247	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	DCC	rs1145247-T	0.6251	2E-8		0.013798737	[0.009-0.0186] unit decrease	Affymetrix [11515109] (imputed)	N
966	chr18	49967810	49967811	rs1373178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q21.2	NR	rs1373178-G	0.588	2E-22		0.0107536	[0.0086-0.0129] unit decrease	NR [9732723] (imputed)	N
966	chr18	49967810	49967811	rs1373178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q21.2	NR	rs1373178-G	0.588	4E-15		0.020316398	[0.015-0.025] unit decrease	NR [~ 10000000] (imputed)	N
966	chr18	49967810	49967811	rs1373178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18q21.2	NR	rs1373178-G	0.583	4E-13		0.0107789	[0.0079-0.0137] unit increase	NR [9732723] (imputed)	N
966	chr18	49988591	49988592	rs55986545	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	18q21.2	DCC	rs55986545-T	0.2929	2E-8		0.015807368	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
966	chr18	49993265	49993266	rs1221983	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	18q21.2	NR	rs1221983-T	0.394	2E-8		1.029	[1.02-1.04]	NR [8968716] (imputed)	N
966	chr18	49996135	49996136	rs1221976	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q21.2	DCC	rs1221976-A	0.663	3E-11		0.014177998	[0.01-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
966	chr18	49997806	49997807	rs1372626	27393504	Zanetti KA	2016-05-13	Lung Cancer	Genome-wide association study confirms lung cancer susceptibility loci on chromosomes 5p15 and 15q25 in an African-American population.	Smoking behaviour (cigarettes smoked per day)	up to 4737 African American individuals	NA	18q21.2	DCC	rs1372626-?	NR	3E-6				Illumina [1024001]	N
966	chr18	50023858	50023859	rs12970816	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs12970816-G	0.598	3E-24		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
966	chr18	50023858	50023859	rs12970816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	18q21.2		rs12970816-?	NR	8E-10				NR [~ 8900000] (imputed)	N
966	chr18	50026141	50026142	rs6508144	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	18q21.2	DCC	rs6508144-C		2E-8		1.02	[NR]	Affymetrix [up to 79000000] (imputed)	N
966	chr18	50052083	50052084	rs71367283	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs71367283-A	NR	2E-10		6.4	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
967	chr18	50107976	50107977	rs1143768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs1143768-T	0.2391	2E-9	(MTAG)	0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
967	chr18	50109970	50109971	rs1671269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs1671269-T	0.7524	7E-10		0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
967	chr18	50124618	50124619	rs17681615	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	18q21.2	DCC	rs17681615-A	0.329342	3E-9		5.91	z score increase	NR [10847151] (imputed)	N
967	chr18	50164885	50164886	rs34481890	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs34481890-A	0.8104	9E-10	(conditional-joint)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
967	chr18	50192395	50192396	rs4940203	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.2	DCC	rs4940203-A	0.294	5E-7	(RQmax)	0.05	[NR] unit increase	Illumina [899892]	N
967	chr18	50198663	50198664	rs541350002	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q21.2		rs541350002-T	0.0029923	9E-6		0.27203	[0.15-0.39] unit increase	Affymetrix [15580782] (imputed)	N
967	chr18	50198663	50198664	rs541350002	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	18q21.2		rs541350002-T	0.0029923	5E-6		0.28591	[0.16-0.41] unit increase	Affymetrix [15580782] (imputed)	N
968	chr18	50215411	50215412	rs1460196	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	18q21.2	DCC	rs1460196-?	NR	9E-6		0.27	[NR] unit increase	Affymetrix, Illumina [1348798]	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	9E-6				Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	2E-6				Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	2E-6		0.0422	[0.025-0.059] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	5E-7		0.0434	[0.027-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	3E-6		0.0395	[0.023-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50219519	50219520	rs72914247	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	18q21.2	DCC	rs72914247-A	0.1266	1E-5		0.0386	[0.022-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
968	chr18	50285397	50285398	rs768048	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	18q21.2	DCC	rs768048-C	0.12	8E-6		0.11	[NR] unit increase	Illumina [~ 300000]	N
968	chr18	50295160	50295161	rs1346972	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.2	NR	rs1346972-?	NR	1E-22				Affymetrix [NR]	N
969	chr18	50379031	50379032	rs4384683	30261039	Suri P	2018-09-27	PLoS Genet	Genome-wide meta-analysis of 158,000 individuals of European ancestry identifies three loci associated with chronic back pain.	Chronic back pain	29,531 European ancestry cases, 128,494 European ancestry controls	50,915 British ancestry cases, 232,837 British ancestry controls	18q21.2	DCC	rs4384683-G	0.46	2E-10		1.0309278	[1.02-1.04]	Affymetrix, Illumina [up to 9775703] (imputed)	N
969	chr18	50379565	50379566	rs143913489	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs143913489-T	0.01394	2E-9	(AKR1B10)	2.005	NR unit increase	Illumina [1671387] (imputed)	N
969	chr18	50389193	50389194	rs7232516	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs7232516-A	0.13214080133673	6E-11		0.011482182	[0.008-0.0149] unit decrease	NR [NR]	N
969	chr18	50389193	50389194	rs7232516	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs7232516-A	0.13214080133673	1E-11		0.014884895	[0.011-0.019] unit decrease	NR [NR]	N
969	chr18	50389193	50389194	rs7232516	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs7232516-A	0.13214080133673	7E-11		0.012123633	[0.0085-0.0158] unit decrease	NR [NR]	N
969	chr18	50389193	50389194	rs7232516	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs7232516-A	0.13214080133673	2E-11		0.009444294	[0.0067-0.0122] unit decrease	NR [NR]	N
969	chr18	50391869	50391870	rs11082953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.2		rs11082953-?	NR	1E-11				NR [~ 8900000] (imputed)	N
969	chr18	50393102	50393103	rs149735550	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs149735550-T	NR	3E-8		5.529	z score increase	Affymetrix [10847151] (imputed)	N
969	chr18	50393699	50393700	rs9956644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.2		rs9956644-?	NR	3E-8				NR [~ 8900000] (imputed)	N
969	chr18	50394404	50394405	rs2043187	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q21.2	DCC	rs2043187-A	0.2773	3E-7		0.012277518	[0.0069-0.0177] unit decrease	NR [9417325] (imputed)	N
969	chr18	50394404	50394405	rs2043187	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs2043187-?	NR	4E-10			[NR]	NR [NR] (imputed)	N
969	chr18	50394404	50394405	rs2043187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs2043187-A	0.384	6E-13		0.0107	[0.0078-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
969	chr18	50394406	50394407	rs72922230	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs72922230-?	NR	4E-10			[NR]	NR [NR] (imputed)	N
969	chr18	50429098	50429099	rs151208108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs151208108-T	0.01045	2E-8	(RAC2)	0.01297	NR unit increase	Illumina [1671387] (imputed)	N
969	chr18	50438654	50438655	rs4401134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs4401134-T	0.1213	3E-9	(MTAG)	0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
969	chr18	50440365	50440366	rs9966005	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs9966005-A	NR	4E-8		5.514	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
969	chr18	50444280	50444281	rs12607356	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs12607356-A	NR	2E-9		0.018138453	[0.012-0.024] unit decrease	Affymetrix [NR]	N
969	chr18	50444666	50444667	rs12457812	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs12457812-?	NR	2E-8	(left putamen)			NR [9227495] (imputed)	N
969	chr18	50451433	50451434	rs2298656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs2298656-T	0.0826	4E-14	(MTAG)	0.0226	[0.017-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
969	chr18	50451433	50451434	rs2298656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q21.2	Intergenic	rs2298656-C	0.9174	1E-8		0.0235	[0.015-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
969	chr18	50451433	50451434	rs2298656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs2298656-T	0.0783	5E-14	(MTAG)	0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
969	chr18	50458733	50458734	rs78324365	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs78324365-A	0.0790363070077075	5E-9		0.0099460315	[0.0066-0.0133] unit decrease	NR [NR]	N
970	chr18	50469541	50469542	rs16955886	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.2	NR	rs16955886-?	NR	3E-8				Affymetrix [NR]	N
970	chr18	50483056	50483057	rs72926141	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs72926141-A	0.01394	2E-9	(AKR1B10)	2.005	NR unit increase	Illumina [1671387] (imputed)	N
970	chr18	50487201	50487202	rs4940227	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q21.2	NR	rs4940227-?	NR	4E-6		0.0081162	[0.0046-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
970	chr18	50507005	50507006	rs11663596	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11663596-?	NR	8E-9	(left putamen)			NR [9227495] (imputed)	N
970	chr18	50507207	50507208	rs72928185	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs72928185-G	0.02613	2E-8	(AKR1B10)	1.393	NR unit increase	Illumina [1671387] (imputed)	N
970	chr18	50517508	50517509	rs62097899	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs62097899-T	NR	8E-10		6.145	z score increase	Affymetrix [10847151] (imputed)	N
970	chr18	50517775	50517776	rs7504990	22318345	Cha PC	2012-02-09	J Hum Genet	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	18q21.2	DCC	rs7504990-A	0.21	7E-8		6.95	[3.43-14.08]	Illumina [425706] (imputed)	N
970	chr18	50526532	50526533	rs11663217	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11663217-?	NR	6E-9	(left putamen)			NR [9227495] (imputed)	N
970	chr18	50526532	50526533	rs11663217	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11663217-?	NR	3E-8	(right putamen)			NR [9227495] (imputed)	N
970	chr18	50529140	50529141	rs117512210	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs117512210-A	0.01568	3E-9	(CYP2E1)	0.3898	NR unit increase	Illumina [1671387] (imputed)	N
970	chr18	50543301	50543302	rs56796226	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q21.2	NA	rs56796226-G	0.4195	2E-9	(Male)	1.0604454	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
970	chr18	50547540	50547541	rs11872713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs11872713-T	0.154	5E-9	(MTAG)	0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
970	chr18	50554205	50554206	rs77867423	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	DCC	rs77867423-C	NR	6E-9		0.0099587	[0.0066-0.0133] unit decrease	Affymetrix [18485882] (imputed)	N
970	chr18	50559985	50559986	rs11663694	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	18q21.2	NR	rs11663694-C	0.412	2E-10		0.0100273	[0.0069-0.0131] unit increase	NR [9732723] (imputed)	N
970	chr18	50570430	50570431	rs7506451	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs7506451-A	NR	3E-10		0.019293213	[0.013-0.025] unit decrease	Affymetrix [NR]	N
970	chr18	50572849	50572849	rs35362746	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs35362746-?	NR	1E-11	(right putamen)			NR [9227495] (imputed)	N
970	chr18	50587878	50587879	rs147904652	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.2	NR	rs147904652-C	0.01916	2E-8	(HNRNPH3)	0.06072	NR unit increase	Illumina [1671387] (imputed)	N
970	chr18	50593114	50593115	rs8094435	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs8094435-A	0.779	6E-13		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
971	chr18	50600551	50600552	rs9964201	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q21.2	DCC	rs9964201-C	0.917792	4E-12		0.0261769	[0.019-0.034] unit decrease	NR [16516521] (imputed)	N
971	chr18	50603012	50603012	rs11463289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.2		rs11463289-GC	NR	1E-11		0.0179	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
971	chr18	50605641	50605642	rs4129322	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q21.2	DCC	rs4129322-A	0.1	4E-8		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
971	chr18	50605641	50605642	rs4129322	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	18q21.2	DCC	rs4129322-A	0.08171499999999998	3E-10		0.0442198	[0.03-0.058] unit increase	Affymetrix [641018] (imputed)	N
971	chr18	50611758	50611759	rs9961846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q21.2		rs9961846-C	NR	3E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
971	chr18	50613670	50613671	rs71368910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	18q21.2		rs71368910-G	0.286248	4E-8		0.0199825	[0.013-0.027] unit decrease	Illumina [13479178] (imputed)	N
971	chr18	50614731	50614732	rs11663393	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	18q21.2	NR	rs11663393-A	NR	2E-10		1.03	[1.02-1.04]	NR [NR] (imputed)	N
971	chr18	50614731	50614732	rs11663393	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs11663393-?	NR	7E-9		0.01346	[0.0089-0.018] unit increase	Affymetrix [10847151] (imputed)	N
971	chr18	50614731	50614732	rs11663393	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	18q21.2	DCC, MIR4528	rs11663393-A	0.45	2E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
971	chr18	50614731	50614732	rs11663393	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	18q21.2	NR	rs11663393-G	0.5488	6E-9		0.0139	[0.0092-0.0186] unit decrease	Illumina [NR] (imputed)	N
971	chr18	50617174	50617175	rs4291980	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs4291980-G	0.43	2E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50620086	50620087	rs7506909	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	18q21.2	NA	rs7506909-G		2E-17		0.0157242	[0.012-0.019] unit increase	Illumina [13288253] (imputed)	N
971	chr18	50620086	50620087	rs7506909	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs7506909-?	NR	5E-12	(right putamen)			NR [9227495] (imputed)	N
971	chr18	50622162	50622162	rs767443167	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs767443167-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
971	chr18	50622394	50622395	rs4462678	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	18q21.2	NR	rs4462678-A	0.426441	2E-11		0.042692296	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
971	chr18	50623639	50623640	rs4321259	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs4321259-A	0.43	2E-6		1.010101	[-1.0871-3.1073]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50635095	50635096	rs4296324	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs4296324-C	0.57	5E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50635118	50635119	rs11659803	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	18q21.2	NR	rs11659803-A	0.383073	5E-8		5.47	z score increase	NR [10847151] (imputed)	N
971	chr18	50636400	50636401	rs9950187	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	18q21.2	DCC	rs9950187-T	0.04	2E-6		0.453	[0.27-0.64] unit increase	Illumina [NR] (imputed)	N
971	chr18	50637157	50637158	rs7241743	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs7241743-?	NR	1E-14	(right putamen)			NR [9227495] (imputed)	N
971	chr18	50637157	50637158	rs7241743	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs7241743-?	NR	1E-14	(left putamen)			NR [9227495] (imputed)	N
971	chr18	50645663	50645664	rs4343352	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs4343352-T	0.56	4E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50656125	50656126	rs7229097	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs7229097-G	0.44	5E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50669724	50669725	rs8089828	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs8089828-?	NR	1E-9			[NR]	NR [NR] (imputed)	N
971	chr18	50672762	50672763	rs4939722	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs4939722-T	NR	3E-8		5.566	z score increase	Affymetrix [10847151] (imputed)	N
971	chr18	50683305	50683306	rs4372758	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs4372758-T	0.56	3E-6		1.1627907	[-0.93441-3.25999]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50686650	50686651	rs4245255	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	18q21.2		rs4245255-?	NR	9E-11				NR [7857346] (imputed)	N
971	chr18	50686650	50686651	rs4245255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs4245255-C	0.5818	6E-25	(MTAG)	0.0172	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
971	chr18	50686650	50686651	rs4245255	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q21.2	Intergenic	rs4245255-C	0.5818	2E-14		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
971	chr18	50695903	50695904	rs9949444	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs9949444-A	NR	4E-12		6.932	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
971	chr18	50698925	50698926	rs4277413	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs4277413-A	NR	1E-11		6.77	z score decrease	Affymetrix [10847151] (imputed)	N
971	chr18	50698925	50698926	rs4277413	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs4277413-A	NR	5E-13		0.021113435	[0.015-0.027] unit increase	Affymetrix [NR]	N
971	chr18	50706072	50706073	rs10853627	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs10853627-T	NR	7E-10		6.175	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
971	chr18	50706072	50706073	rs10853627	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs10853627-T	NR	1E-8		5.676	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
971	chr18	50707291	50707292	rs8083850	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs8083850-A	NR	6E-13		0.02140118	[0.016-0.027] unit decrease	Affymetrix [NR]	N
971	chr18	50709980	50709981	rs17408393	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs17408393-G	0.4	2E-6		1.0309278	[-0.98787-3.04973]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50711509	50711510	rs12959099	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs12959099-A	0.56	2E-6		1.02	[-1.0772-3.1172]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50711509	50711510	rs12959099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs12959099-A	0.5494	2E-20	(conditional-joint)	0.0132	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
971	chr18	50711775	50711776	rs7505145	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs7505145-A	NR	2E-8		5.622	z score decrease	Affymetrix [10847151] (imputed)	N
971	chr18	50716944	50716945	rs7245004	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs7245004-A	NR	4E-10		6.245	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
971	chr18	50716944	50716945	rs7245004	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs7245004-A	NR	7E-14		0.02242235	[0.017-0.028] unit decrease	Affymetrix [NR]	N
971	chr18	50718943	50718944	rs17487277	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs17487277-C	0.6	2E-6		1.01	[-1.0872-3.1072]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50721711	50721712	rs62099230	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	18q21.2	NR	rs62099230-A	0.4	2E-6		1.010101	[-1.0871-3.1073]	Affymetrix [at least 143006] (imputed)	N
971	chr18	50723282	50723283	rs17487484	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs17487484-T	NR	2E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
971	chr18	50723282	50723283	rs17487484	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q21.2	DCC	rs17487484-T	0.49699	5E-10		6.21	z score decrease	NR [10847151] (imputed)	N
971	chr18	50723282	50723283	rs17487484	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	NR	rs17487484-T	0.49699	1E-9		6.1	z score decrease	NR [10847151] (imputed)	N
971	chr18	50724471	50724472	rs10221412	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs10221412-T	NR	4E-11		0.019780375	[0.014-0.026] unit increase	Affymetrix [NR]	N
972	chr18	50726558	50726559	rs8084351	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	18q21.2	NR	rs8084351-?		4E-9				NR [520857]	N
972	chr18	50726558	50726559	rs8084351	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	18q21.2	DCC	rs8084351-?		4E-12				NR [6786993] (imputed)	N
972	chr18	50726558	50726559	rs8084351	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	18q21.2	NR	rs8084351-G	NR	9E-6		0.009073	[0.0051-0.0131] unit increase	Illumina [~ 540852]	N
972	chr18	50726558	50726559	rs8084351	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	18q21.2	NR	rs8084351-G	0.4822	4E-12		0.013	[0.0093-0.0167] unit increase	Illumina [NR] (imputed)	N
972	chr18	50726558	50726559	rs8084351	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	18q21.2	NR	rs8084351-G	0.4911	1E-13		0.021	[0.016-0.026] unit decrease	Illumina [NR] (imputed)	N
972	chr18	50726558	50726559	rs8084351	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	18q21.2	NR	rs8084351-G	0.486	2E-12		0.015	[0.011-0.019] unit decrease	Illumina [NR] (imputed)	N
972	chr18	50726748	50726749	rs8084280	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs8084280-T	0.508429119361873	3E-19		0.008229027	[0.0064-0.01] unit increase	NR [NR]	N
972	chr18	50726748	50726749	rs8084280	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs8084280-T	0.508429119361873	8E-17		0.010055291	[0.0077-0.0124] unit increase	NR [NR]	N
972	chr18	50726748	50726749	rs8084280	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs8084280-T	0.508429119361873	3E-19		0.013174078	[0.01-0.016] unit increase	NR [NR]	N
972	chr18	50726748	50726749	rs8084280	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs8084280-T	0.508429119361873	3E-16		0.010693542	[0.0081-0.0133] unit increase	NR [NR]	N
972	chr18	50726748	50726749	rs8084280	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs8084280-T	0.508429119361873	3E-19		0.008418871	[0.0066-0.0103] unit increase	NR [NR]	N
972	chr18	50726748	50726749	rs8084280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q21.2		rs8084280-?	NR	2E-10				NR [~ 8900000] (imputed)	N
972	chr18	50726748	50726749	rs8084280	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	53,525 European ancestry cases, 60,443 European ancestry controls	NA	18q21.2	DCC	rs8084280-T	0.508	3E-9		0.05	[0.033-0.067] unit increase	Affymetrix [8797848] (imputed)	N
972	chr18	50726748	50726749	rs8084280	29187730	Ward J	2017-11-30	Transl Psychiatry	Genome-wide analysis in UK Biobank identifies four loci associated with mood instability and genetic correlation with major depressive disorder, anxiety disorder and schizophrenia.	Mood instability	43,660 European ancestry cases without a psychiatric disorder diagnosis, 60,443 European ancestry controls	NA	18q21.2	DCC	rs8084280-T	0.514	1E-7		0.047	[0.031-0.063] unit increase	Affymetrix [8797848] (imputed)	N
972	chr18	50731801	50731802	rs7227069	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q21.2	NR	rs7227069-A	0.4326	2E-28		1.024	[1.02-1.029]	NR [8098588] (imputed)	N
972	chr18	50735417	50735418	rs62100765	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	DCC	rs62100765-T	0.3995	8E-14		0.015524013	[0.011-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
972	chr18	50735417	50735418	rs62100765	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	18q21.2	NR	rs62100765-T	0.4155	1E-10		0.014554729	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
972	chr18	50738038	50738039	rs62100767	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	18q21.2		rs62100767-A	0.6007	2E-8		41.198208	z score increase	NR [6814003]	N
972	chr18	50741102	50741103	rs74681568	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	18q21.2	DCC	rs74681568-G		2E-7		0.116	[0.072-0.159] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
972	chr18	50743671	50743672	rs8099145	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs8099145-?	NR	2E-12			[NR]	NR [NR] (imputed)	N
972	chr18	50743671	50743672	rs8099145	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs8099145-?	NR	6E-14	(left putamen)			NR [9227495] (imputed)	N
972	chr18	50743671	50743672	rs8099145	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs8099145-?	NR	5E-13	(right putamen)			NR [9227495] (imputed)	N
972	chr18	50746747	50746748	rs4632195	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q21.2		rs4632195-?	NR	6E-18		0.0231	unit increase	NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q21.2	NR	rs4632195-T	NR	4E-10		6.255	NR z score increase	NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	4E-11				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	3E-11				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	1E-10				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	1E-11				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	2E-9				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs4632195-?	NR	3E-12				NR [NR]	N
972	chr18	50746747	50746748	rs4632195	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	18q21.2	NR	rs4632195-?		5E-9				NR [8377093]	N
972	chr18	50746747	50746748	rs4632195	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	DCC	rs4632195-C	NR	3E-9		0.010338	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
972	chr18	50746747	50746748	rs4632195	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	DCC	rs4632195-T	NR	9E-6	(EA)	1.0494	[1.03-1.07]	Illumina [6627481] (imputed)	N
972	chr18	50746747	50746748	rs4632195	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	DCC	rs4632195-T	NR	7E-7		1.053	[1.03-1.07]	Illumina [6627481] (imputed)	N
972	chr18	50746747	50746748	rs4632195	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs4632195-T	NR	5E-12		6.901	z score increase	Affymetrix [10847151] (imputed)	N
972	chr18	50746747	50746748	rs4632195	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q21.2	DCC	rs4632195-T	0.495475	3E-9		5.95	z score increase	NR [10847151] (imputed)	N
972	chr18	50746747	50746748	rs4632195	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q21.2	intergenic	rs4632195-T	NR	2E-6		1.051	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
972	chr18	50746747	50746748	rs4632195	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q21.2	NR	rs4632195-T	0.516	5E-7		0.01753573	[0.011-0.024] unit increase	Affymetrix [up to 6544775] (imputed)	N
972	chr18	50746747	50746748	rs4632195	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.2	NR	rs4632195-T	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
972	chr18	50747190	50747191	rs6508210	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA			rs6508210-?	NR	2E-8				NR [2625067]	N
972	chr18	50747190	50747191	rs6508210	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA		NR	rs6508210-?		5E-17				NR [520857]	N
972	chr18	50747190	50747191	rs6508210	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA		NR	rs6508210-?		3E-8				NR [520857]	N
972	chr18	50747955	50747956	rs1367633	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs1367633-A	NR	2E-8		0.017354866	[0.011-0.023] unit decrease	Affymetrix [NR]	N
972	chr18	50748498	50748499	rs10502966	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q21.2	NR	rs10502966-G	0.418	9E-11		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
972	chr18	50748498	50748499	rs10502966	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs10502966-A	NR	1E-11		0.020086907	[0.014-0.026] unit increase	Affymetrix [NR]	N
972	chr18	50749934	50749935	rs17488316	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs17488316-?	NR	6E-12	(left putamen)			NR [9227495] (imputed)	N
972	chr18	50749934	50749935	rs17488316	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs17488316-?	NR	4E-11	(right putamen)			NR [9227495] (imputed)	N
972	chr18	50750224	50750225	rs12968428	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs12968428-?	NR	2E-9			[NR]	NR [NR] (imputed)	N
972	chr18	50750224	50750225	rs12968428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.2	Intergenic	rs12968428-A	0.6296	1E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
972	chr18	50750224	50750225	rs12968428	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs12968428-A	NR	2E-12		7.065	z score increase	Affymetrix [10847151] (imputed)	N
972	chr18	50752609	50752610	rs8099160	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	18q21.2	NR	rs8099160-?		2E-14				NR [11140414]	N
972	chr18	50752609	50752610	rs8099160	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs8099160-A	NR	2E-14		7.638	z score increase	Affymetrix [10847151] (imputed)	N
972	chr18	50753740	50753741	rs7231178	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	18q21.2	NR	rs7231178-A	0.552772	4E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
972	chr18	50754092	50754093	rs62100775	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs62100775-A	NR	1E-8		5.708	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
972	chr18	50754632	50754633	rs62100776	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	18q21.2	DCC	rs62100776-A	NR	1E-8		5.6640935	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
972	chr18	50770637	50770638	rs10853628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q21.2		rs10853628-?	NR	1E-13				NR [~ 8900000] (imputed)	N
972	chr18	50776290	50776291	rs1078459	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs1078459-T	NR	8E-13		7.17	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
972	chr18	50776290	50776291	rs1078459	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs1078459-T	NR	3E-11		0.019743847	[0.014-0.026] unit decrease	Affymetrix [NR]	N
972	chr18	50776390	50776391	rs17410557	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs17410557-?	NR	1E-11			[NR]	NR [NR] (imputed)	N
972	chr18	50776390	50776391	rs17410557	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q21.2	NR	rs17410557-C	0.3907	8E-7		0.0059	[0.0035-0.0083] unit increase	NR [7666894] (imputed)	N
972	chr18	50778736	50778737	rs17501820	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	18q21.2	DCC	rs17501820-T	0.404747	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
972	chr18	50779411	50779412	rs1431181	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs1431181-A	NR	3E-12		6.958	z score increase	Affymetrix [10847151] (imputed)	N
972	chr18	50782036	50782037	rs12969597	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	DCC	rs12969597-A	0.4822	3E-9		0.0119917225	[0.008-0.016] unit decrease	Affymetrix [up to 18485882] (imputed)	N
972	chr18	50795112	50795113	rs17411061	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs17411061-T	NR	4E-9		5.874	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
972	chr18	50807358	50807359	rs17411339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs17411339-A	0.5612	5E-23		0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
972	chr18	50808435	50808436	rs5825003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.2		rs5825003-G	NR	4E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
972	chr18	50812735	50812736	rs11660938	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	18q21.2	DCC	rs11660938-?	NR	4E-12		41.504	[29.78-53.23] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
972	chr18	50816579	50816580	rs905761	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs905761-?	NR	7E-16	(left putamen)			NR [9227495] (imputed)	N
972	chr18	50816579	50816580	rs905761	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs905761-?	NR	2E-16	(right putamen)			NR [9227495] (imputed)	N
972	chr18	50818826	50818827	rs62097986	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	18q21.2	DCC	rs62097986-A	0.44	1E-13	(Putamen, EA)	30.28	[22.30-38.26] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
972	chr18	50818890	50818891	rs4643406	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs4643406-?	NR	9E-16	(right putamen)			NR [9227495] (imputed)	N
972	chr18	50818890	50818891	rs4643406	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs4643406-?	NR	3E-15	(left putamen)			NR [9227495] (imputed)	N
972	chr18	50828901	50828902	rs11877496	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	DCC	rs11877496-T	0.496584	1E-9		6.11	z score increase	NR [10847151] (imputed)	N
972	chr18	50831175	50831176	rs6508220	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs6508220-A	NR	1E-16		8.31	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
972	chr18	50831175	50831176	rs6508220	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs6508220-A	NR	5E-15		0.022857206	[0.017-0.029] unit decrease	Affymetrix [NR]	N
972	chr18	50832101	50832102	rs1431196	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	18q21.2	DCC	rs1431196-A	0.57	3E-11		0.032	unit decrease	NR [2324712] (imputed)	N
972	chr18	50832101	50832102	rs1431196	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q21.2	DCC	rs1431196-?	NR	6E-11		0.013083531	[0.0092-0.017] unit increase	NR [7306098]	N
972	chr18	50832101	50832102	rs1431196	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	18q21.2	DCC	rs1431196-?	NR	6E-11		6.546	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
972	chr18	50832101	50832102	rs1431196	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	18q21.2	DCC	rs1431196-?	NR	4E-7		5.073	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
972	chr18	50838675	50838676	rs9954838	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	18q21.2	DCC	rs9954838-?		4E-16				NR [7428630] (imputed)	N
972	chr18	50845139	50845140	rs77162730	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q21.2	PSMA2, MRPL32	rs77162730-?		4E-29				NR [7428630] (imputed)	N
972	chr18	50846440	50846440	rs773737322	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs773737322-?	NR	1E-10			[NR]	NR [NR] (imputed)	N
973	chr18	50861408	50861409	rs1367635	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs1367635-?	NR	5E-9			[NR]	NR [NR] (imputed)	N
973	chr18	50861408	50861409	rs1367635	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q21.2	NR	rs1367635-T	0.4852	2E-11		0.027676282	[0.02-0.036] unit decrease	NR [NR]	N
973	chr18	50862310	50862311	rs62098012	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs62098012-C	0.586	7E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
973	chr18	50863860	50863861	rs62098013	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	18q21.2		rs62098013-G	0.64	4E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
973	chr18	50863860	50863861	rs62098013	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	18q21.2	NR	rs62098013-A	0.379	8E-20		9.112	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
973	chr18	50863860	50863861	rs62098013	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs62098013-G	0.3631	4E-11		0.0169	[0.012-0.022] unit decrease	NR [NR]	N
973	chr18	50863860	50863861	rs62098013	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q21.2	NR	rs62098013-A	0.365	6E-16		0.00927358	[0.007-0.0115] unit increase	NR [9732723] (imputed)	N
973	chr18	50863860	50863861	rs62098013	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q21.2	NR	rs62098013-A	0.365322	2E-11	(Conditioned on chr18:49967811)	0.017709976	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
973	chr18	50863860	50863861	rs62098013	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18q21.2	NR	rs62098013-A	0.37	2E-14		0.0117398	[0.0087-0.0147] unit decrease	NR [9732723] (imputed)	N
973	chr18	50871239	50871256	rs766498304	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs766498304-?	NR	8E-9			[NR]	NR [NR] (imputed)	N
973	chr18	50871239	50871256	rs766498304	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	18q21.2	DCC	rs766498304-?	NR	6E-10		0.00876122	[0.006-0.0115] unit decrease	Affymetrix [NR] (imputed)	N
973	chr18	50873717	50873718	rs151120610	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q21.2	NR	rs151120610-?	NR	3E-8				Illumina [7760689] (imputed)	N
973	chr18	50884528	50884529	rs4405620	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	18q21.2	C3orf49, THOC7, ATXN7, PSMD6	rs4405620-?		1E-16				NR [7428630] (imputed)	N
973	chr18	50884528	50884529	rs4405620	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	18q21.2	AFAP1, AC097381.1	rs4405620-?		2E-16				NR [7428630] (imputed)	N
973	chr18	50884923	50884924	rs6508230	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs6508230-?	NR	9E-18	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50884923	50884924	rs6508230	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs6508230-?	NR	4E-18	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50887960	50887961	rs10502971	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	18q21.2	DCC	rs10502971-A	0.04	3E-6		0.371	[0.22-0.52] unit increase	Illumina [6380737] (imputed)	N
973	chr18	50898216	50898217	rs8097041	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	18q21.2	NR	rs8097041-A	0.3644	3E-9		0.01159	[0.0078-0.0154] unit decrease	NR [8968716] (imputed)	N
973	chr18	50898216	50898217	rs8097041	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	DCC	rs8097041-A	NR	2E-9		0.010526	[0.0071-0.014] unit increase	Affymetrix [18485882] (imputed)	N
973	chr18	50898216	50898217	rs8097041	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs8097041-?	NR	2E-11		0.01603	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
973	chr18	50898216	50898217	rs8097041	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	18q21.2	DCC	rs8097041-A	0.375425	3E-8		5.54	z score decrease	NR [10847151] (imputed)	N
973	chr18	50899146	50899146	rs11372185	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11372185-?	NR	4E-14	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50899146	50899146	rs11372185	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11372185-?	NR	2E-14	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50900431	50900432	rs8091068	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs8091068-T	NR	1E-8		5.726	z score decrease	Affymetrix [10847151] (imputed)	N
973	chr18	50906030	50906031	rs11876941	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (ever vs never smoking interaction)	8,203 African American females, 3,484 Hispanic females	NA	18q21.2	DCC	rs11876941-A	NR	5E-6	(ever vs never smoking)	0.003	[NR] unit decrease	Affymetrix [706791]	N
973	chr18	50907080	50907081	rs60658082	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	DCC	rs60658082-T	0.4778	4E-9		0.011896684	[0.0079-0.0159] unit decrease	Affymetrix [up to 18485882] (imputed)	N
973	chr18	50907126	50907127	rs11665242	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	18q21.2	DCC	rs11665242-G	NR	9E-10		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
973	chr18	50907126	50907127	rs11665242	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs11665242-A	0.5652	1E-29	(MTAG)	0.0149	[0.012-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
973	chr18	50907126	50907127	rs11665242	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs11665242-A	NR	9E-16		0.023859674	[0.018-0.03] unit increase	Affymetrix [NR]	N
973	chr18	50907178	50907179	rs4940255	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs4940255-?	NR	6E-15	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50907178	50907179	rs4940255	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs4940255-?	NR	1E-14	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50907333	50907334	rs11665364	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11665364-?	NR	1E-15	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50907333	50907334	rs11665364	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs11665364-?	NR	1E-14	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50907364	50907365	rs11662271	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	18q21.2	NR	rs11662271-T	0.487078	9E-16		0.05074754	[0.038-0.063] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
973	chr18	50907364	50907365	rs11662271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs11662271-T	0.4733	3E-24	(MTAG)	0.0233	[0.019-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
973	chr18	50907364	50907365	rs11662271	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	18q21.2	Intergenic	rs11662271-T	0.4733	4E-16		0.0232	[0.018-0.029] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
973	chr18	50907364	50907365	rs11662271	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs11662271-T	NR	3E-12		6.971	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
973	chr18	50908573	50908574	rs62098054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs62098054-C	0.5436	4E-17	(MTAG)	0.0151	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
973	chr18	50910124	50910125	rs12967544	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	18q21.2		rs12967544-C	NR	2E-6		1.29	[1.16-1.44]	Illumina [7591411] (imputed)	N
973	chr18	50911757	50911758	rs11663156	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs11663156-T	NR	1E-10		6.433	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
973	chr18	50911757	50911758	rs11663156	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs11663156-T	NR	1E-8		0.018672144	[0.012-0.025] unit decrease	Affymetrix [NR]	N
973	chr18	50916374	50916375	rs3794916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q21.2		rs3794916-?	NR	2E-8				NR [~ 8900000] (imputed)	N
973	chr18	50919599	50919600	rs10164055	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q21.2	DCC	rs10164055-T	0.3986	7E-20		0.020535868	[0.015-0.026] unit decrease	NR [9417325] (imputed)	N
973	chr18	50919599	50919600	rs10164055	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	18q21.2	DCC	rs10164055-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
973	chr18	50919599	50919600	rs10164055	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q21.2	NR	rs10164055-T	NR	2E-8		5.575	NR z score decrease	NR [NR]	N
973	chr18	50931079	50931080	rs1972044	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	DCC	rs1972044-A	0.4395	7E-11		0.013323162	[0.0093-0.0173] unit decrease	Affymetrix [up to 18485882] (imputed)	N
973	chr18	50931079	50931080	rs1972044	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs1972044-A	NR	7E-14		0.023219118	[0.017-0.029] unit decrease	Affymetrix [NR]	N
973	chr18	50932794	50932795	rs62100026	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	18q21.2		rs62100026-?	NR	4E-12				NR [7857346] (imputed)	N
973	chr18	50944900	50944901	rs9807529	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs9807529-?	NR	3E-15	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50944900	50944901	rs9807529	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	DCC	rs9807529-A	NR	4E-8		0.0095976	[0.0062-0.013] unit increase	Affymetrix [18485882] (imputed)	N
973	chr18	50949401	50949402	rs13381096	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs13381096-A	NR	2E-11		6.726	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
973	chr18	50957921	50957922	rs8089865	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q21.2	DCC	rs8089865-A	0.59	2E-10	(EA)	20.57	[14.24-26.9] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
973	chr18	50957921	50957922	rs8089865	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q21.2	DCC	rs8089865-A	0.53	7E-10		15.81	[10.77-20.85] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
973	chr18	50957921	50957922	rs8089865	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		18q21.2		rs8089865-?	NR	2E-6		10.65	[6.26-15.04] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
973	chr18	50957921	50957922	rs8089865	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	18q21.2	NR	rs8089865-A	NR	3E-12		6.987	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
973	chr18	50957921	50957922	rs8089865	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs8089865-A	NR	3E-11		6.624	z score increase	Affymetrix [10847151] (imputed)	N
973	chr18	50957921	50957922	rs8089865	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs8089865-?	NR	6E-9		0.01369	[0.0091-0.0183] unit decrease	Affymetrix [10847151] (imputed)	N
973	chr18	50960687	50960688	rs1875560	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs1875560-?	NR	3E-11		0.01545	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
973	chr18	50960687	50960688	rs1875560	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q21.2	DCC	rs1875560-A	0.422829	5E-10		6.22	z score decrease	NR [10847151] (imputed)	N
973	chr18	50967027	50967028	rs11664123	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs11664123-?	NR	2E-8		0.01428	[0.0093-0.0193] unit decrease	Affymetrix [10847151] (imputed)	N
973	chr18	50967251	50967252	rs8090945	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs8090945-?	NR	4E-13	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50967251	50967252	rs8090945	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs8090945-?	NR	2E-13	(left putamen)			NR [9227495] (imputed)	N
973	chr18	50968972	50968973	rs12953529	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.2	NR	rs12953529-?	NR	3E-15	(right putamen)			NR [9227495] (imputed)	N
973	chr18	50972181	50972182	rs12960505	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs12960505-T	NR	2E-15		0.023936154	[0.018-0.03] unit decrease	Affymetrix [NR]	N
973	chr18	50973168	50973169	rs11661305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q21.2		rs11661305-?	NR	8E-11				NR [~ 8900000] (imputed)	N
973	chr18	50976490	50976498	rs67163261	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	18q21.2	NR	rs67163261-?	NR	1E-6		0.039406	[0.024-0.055] unit increase	Affymetrix [9658292] (imputed)	N
973	chr18	50983438	50983439	rs34160346	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	DCC	rs34160346-C	0.440142	3E-9		5.91	z score decrease	NR [10847151] (imputed)	N
973	chr18	50984996	50984997	rs17417046	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs17417046-T	0.443162733910956	4E-13		0.00836541	[0.0061-0.0106] unit increase	NR [NR]	N
973	chr18	50984996	50984997	rs17417046	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs17417046-T	0.443162733910956	2E-13		0.010869398	[0.008-0.0138] unit increase	NR [NR]	N
973	chr18	50984996	50984997	rs17417046	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs17417046-T	0.443162733910956	2E-12		0.008895953	[0.0064-0.0114] unit increase	NR [NR]	N
973	chr18	50984996	50984997	rs17417046	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs17417046-T	0.443162733910956	2E-13		0.0069432235	[0.0051-0.0088] unit increase	NR [NR]	N
973	chr18	50984996	50984997	rs17417046	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q21.2	DCC	rs17417046-T	NR	3E-13		0.021409929	[0.016-0.027] unit decrease	Affymetrix [NR]	N
974	chr18	50990434	50990435	rs1502233	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	DCC	rs1502233-T	NR	2E-9		6.028	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
974	chr18	50998760	50998761	rs1948783	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs1948783-A	NR	1E-8		5.667	z score increase	Affymetrix [10847151] (imputed)	N
974	chr18	51022605	51022606	rs12607758	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q21.2	DCC	rs12607758-T	0.5932	2E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix [19819130] (imputed)	N
974	chr18	51027403	51027404	rs12955791	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q21.2	DCC	rs12955791-T	0.413009	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
974	chr18	51047832	51047833	rs4453579	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs4453579-A	NR	1E-8		5.672	z score decrease	Affymetrix [10847151] (imputed)	N
974	chr18	51047832	51047833	rs4453579	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q21.2	NR	rs4453579-?	NR	6E-8		5.428	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
974	chr18	51107078	51107079	rs1442089	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer (distant metastatic)	up to 462 European ancestry cases	up to 435 European ancestry cases	18q21.2	DCC	rs1442089-C	0.09	2E-6	(Disease-Specific Survival)	1.56	[1.3-1.87]	Illumina [~ 2700000] (imputed)	N
974	chr18	51116831	51116832	rs1372474	26586795	Phipps AI	2015-11-19	Carcinogenesis	Common genetic variation and survival after colorectal cancer diagnosis: a genome-wide analysis.	Survival in colorectal cancer (distant metastatic)	up to 462 European ancestry cases	up to 435 European ancestry cases	18q21.2	DCC	rs1372474-G	0.1	2E-6	(Overall Survival)	1.53	[1.28-1.83]	Illumina [~ 2700000] (imputed)	N
975	chr18	51161574	51161575	rs12964604	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	18q21.2	NR	rs12964604-C	0.018	7E-7		2.77	[1.85-4.14]	Illumina [9327222] (imputed)	N
975	chr18	51188543	51188544	rs141179786	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	18q21.2	DCC	rs141179786-?	0.02	9E-7	(EA)	2.5	[1.3-25]	Affymetrix, Illumina [10973920] (imputed)	N
975	chr18	51188543	51188544	rs141179786	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	18q21.2	DCC	rs141179786-?	0.02	9E-7		2.5	[1.3-25]	Affymetrix, Illumina [10973920] (imputed)	N
976	chr18	51254449	51254450	rs72928269	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q21.2	NR	rs72928269-T	0.946	3E-6		0.038276628	[0.022-0.054] unit decrease	Affymetrix [up to 6544775] (imputed)	N
976	chr18	51258337	51258338	rs3906453	26491034	Sarzynski MA	2015-10-21	Br J Sports Med	Genomic and transcriptomic predictors of triglyceride response to regular exercise.	Response to exercise (triglyceride level interaction)	478 European ancestry individuals from 99 families	NA	18q21.2	DCC	rs3906453-A	0.76	3E-6		0.39	[NR] unit increase	Illumina [2396589] (imputed)	N
976	chr18	51275089	51275090	rs11872159	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	18q21.2	NR	rs11872159-C	0.177	5E-9		0.0167508	[0.011-0.022] unit increase	NR [9732723] (imputed)	N
977	chr18	51484009	51484010	rs68015088	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q21.2	MBD2	rs68015088-G	0.654098	4E-8		0.00810392	[0.0052-0.011] unit increase	Affymetrix [12370749]	N
978	chr18	51526567	51526568	rs1995138	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	18q21.2	MBD2	rs1995138-A	0.08	4E-6	(Age 20-60 years)	0.0957	[0.055-0.136] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
978	chr18	51556266	51556267	rs12604643	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.2	NR	rs12604643-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
979	chr18	51676937	51676938	rs10221375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q21.2		rs10221375-?	NR	5E-8				NR [~ 8900000] (imputed)	N
979	chr18	51703180	51703181	rs8083077	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	18q21.2		rs8083077-?	NR	8E-6		0.2592356	[0.15-0.37] unit increase	Illumina [9875426] (imputed)	N
979	chr18	51706814	51706815	rs572797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs572797-T	0.411955	2E-15				Affymetrix, Illumina [20825802] (imputed)	N
979	chr18	51706814	51706815	rs572797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q21.2	NR	rs572797-T	0.346237	5E-18		0.017563	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
979	chr18	51706814	51706815	rs572797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.2		rs572797-?	NR	1E-20				NR [~ 8900000] (imputed)	N
979	chr18	51707964	51707965	rs4940312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.2		rs4940312-C	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
979	chr18	51727062	51727063	rs2926999	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.2	MBD2	rs2926999-A	0.35394	8E-16		0.019601	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr18	51727062	51727063	rs2926999	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.2	MBD2	rs2926999-A	0.353877	1E-16		0.019223671	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr18	51727063	51727064	rs2610528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs2610528-G	0.419964	4E-17				Affymetrix, Illumina [24246363] (imputed)	N
979	chr18	51727063	51727064	rs2610528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q21.2	NR	rs2610528-G	0.356244	1E-19		0.017808	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
979	chr18	51741093	51741104	rs142234838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.2		rs142234838-G	NR	3E-13		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
979	chr18	51741093	51741104	rs142234838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q21.2		rs142234838-G	NR	1E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
979	chr18	51744050	51744051	rs12957175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.2		rs12957175-C	NR	4E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
979	chr18	51744050	51744051	rs12957175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.2		rs12957175-?	NR	2E-16				NR [~ 8900000] (imputed)	N
979	chr18	51753105	51753106	rs603097	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs603097-?	NR	4E-8				NR [NR]	N
979	chr18	51753105	51753106	rs603097	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs603097-?	NR	4E-8				NR [NR]	N
979	chr18	51753105	51753106	rs603097	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs603097-?	NR	4E-8				NR [NR]	N
979	chr18	51771180	51771181	rs377141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.2		rs377141407-A	0.307175	1E-10		0.01589886	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr18	51771180	51771181	rs377141407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q21.2		rs377141407-A	0.307112	1E-11		0.016795661	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr18	51771321	51771322	rs8089411	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	18q21.2	NR	rs8089411-C	NR	7E-10		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
979	chr18	51772472	51772473	rs8093601	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q21.2	MBD2	rs8093601-C	0.44	2E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
979	chr18	51773422	51773423	rs79491673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q21.2		rs79491673-T	NR	7E-9		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
979	chr18	51773422	51773423	rs79491673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.2		rs79491673-T	0.290355	2E-17		0.021002332	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
979	chr18	51773422	51773423	rs79491673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs79491673-T	0.382278	2E-13				Affymetrix, Illumina [24332387] (imputed)	N
979	chr18	51773422	51773423	rs79491673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.2	NR	rs79491673-T	0.291726	2E-16		0.018143	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
979	chr18	51773424	51773425	rs59669681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.2	NR	rs59669681-T	0.42323	6E-17		0.019319426	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
979	chr18	51773424	51773425	rs59669681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs59669681-T	0.501246	5E-17				Affymetrix, Illumina [24649327] (imputed)	N
979	chr18	51773424	51773425	rs59669681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.2	NR	rs59669681-T	0.425784	1E-17		0.017265	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
979	chr18	51773424	51773425	rs59669681	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs59669681-T	0.473819	6E-14				Affymetrix, Illumina [23114412] (imputed)	N
980	chr18	51773443	51773444	rs55736121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.2		rs55736121-T	0.295536	7E-14		0.018280094	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
980	chr18	51775854	51775855	rs72927075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.2	NR	rs72927075-T	0.29952	1E-15		0.016295	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
980	chr18	51775872	51775873	rs36119120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.2		rs36119120-?	NR	2E-14				NR [~ 8900000] (imputed)	N
980	chr18	51780407	51780408	rs3017289	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	18q21.2	MBD2, POLI	rs3017289-C	0.289	3E-10		0.029	[0.019-0.039] unit decrease	NR [NR] (imputed)	N
980	chr18	51780407	51780408	rs3017289	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	18q21.2	MBD2, POLI	rs3017289-C	0.289	2E-10		0.029	[0.019-0.039] unit decrease	NR [7647814] (imputed)	N
980	chr18	51794553	51794554	rs3730657	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q21.2	NR	rs3730657-?	NR	8E-6		0.0077161	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
980	chr18	51795274	51795275	rs3730662	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	18q21.2	NR	rs3730662-C	0.92	1E-7	(AA)	6.4	[4.15-8.65] bpm decrease	Illumina [at least 1100000] (imputed)	N
980	chr18	51797331	51797332	rs3730682	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	18q21.2	POL1, STARD6	rs3730682-G	0.189	2E-7		1.16	[1.1-1.23]	Illumina [up to 4778154] (imputed)	N
980	chr18	51799756	51799756	rs11379197	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	18q21.2	POLI	rs11379197-GT	0.24746100000000004	2E-10		1.0460713	1.03167130576522-1.06067235724846]	NR [9572556] (imputed)	N
980	chr18	51813965	51813966	rs3730775	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	18q21.2	POLI	rs3730775-T	0.6	4E-11				NR [> 9500000] (imputed)	N
980	chr18	51813965	51813966	rs3730775	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	18q21.2	POLI	rs3730775-A	0.4014	1E-8				Affymetrix [15688218] (imputed)	N
980	chr18	51813965	51813966	rs3730775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	18q21.2		rs3730775-?	NR	1E-10				NR [~ 8900000] (imputed)	N
980	chr18	51816393	51816394	rs144098432	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	18q21.2	POLI	rs144098432-?	NR	6E-11	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
980	chr18	51816407	51816408	rs12965763	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	18q21.2	POLI	rs12965763-?	NR	4E-11		1.059	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
980	chr18	51816407	51816408	rs12965763	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	18q21.2	POLI	rs12965763-A	NR	1E-8		1.048	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
980	chr18	51818500	51818501	rs3730810	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	18q21.2	NR	rs3730810-T	0.92	1E-7	(AA)	6.4	[4.15-8.65] bpm decrease	Illumina [at least 1100000] (imputed)	N
980	chr18	51819749	51819750	rs545979	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	18q21.2	POL1, STARD6, MBD2	rs545979-T	0.291	4E-10		1.12		Illumina [111236] (imputed)	N
980	chr18	51829628	51829629	rs1893958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.2	POLI	rs1893958-T	0.398428	6E-12		0.0155746015	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
980	chr18	51829628	51829629	rs1893958	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	18q21.2	NR	rs1893958-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
980	chr18	51832406	51832407	rs12454487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.2		rs12454487-?	NR	5E-9				NR [~ 8900000] (imputed)	N
980	chr18	51836252	51836253	rs115515961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	18q21.2	NR	rs115515961-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
980	chr18	51851615	51851616	rs34163044	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18q21.2	NR	rs34163044-A	0.41937500000000005	3E-9		0.0167088	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
980	chr18	51851615	51851616	rs34163044	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q21.2	STARD6	rs34163044-A	0.4184	2E-21		0.1488	[0.12-0.18] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
980	chr18	51859614	51859615	rs3933617	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.2	NR	rs3933617-T	0.390444	3E-9		0.018777	[0.013-0.025] unit decrease	NR [19129689] (imputed)	N
980	chr18	51864455	51864456	rs7240948	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	18q21.2	NR	rs7240948-C	0.6013	7E-9		1.0357327	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
980	chr18	51864455	51864456	rs7240948	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	18q21.2	NR	rs7240948-C	0.6013	3E-10		1.03584	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
980	chr18	51866973	51866974	rs1657880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.2		rs1657880-?	NR	9E-10				NR [~ 8900000] (imputed)	N
981	chr18	51919621	51919622	rs190533440	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Escherichia Shigella) interaction	2,293 European ancestry individuals	NA	18q21.2		rs190533440-?	NR	2E-8				Affymetrix [509886] (imputed)	N
981	chr18	51961762	51961763	rs7243790	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	18q21.2	chr18mb51	rs7243790-G	0.431547678	8E-7		0.1365	[0.082-0.191] unit increase	Affymetrix [~ 9800000] (imputed)	N
981	chr18	51964772	51964773	rs7239568	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on average household income before tax (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	18q21.2		rs7239568-?	NR	5E-8				NR [NR]	N
981	chr18	51964772	51964773	rs7239568	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	18q21.2	NR	rs7239568-?	NR	8E-10				NR [2100000]	N
981	chr18	51977831	51977832	rs7243578	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	18q21.2		rs7243578-G	0.34	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
981	chr18	51980979	51980980	rs55715239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	18q21.2		rs55715239-G	0.683342	5E-8		0.0205066	[0.013-0.028] unit increase	Illumina [13479091] (imputed)	N
981	chr18	51993989	51993989	rs202029458	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	18q21.2	NR	rs202029458-?	NR	2E-7		0.1258	[0.078-0.173] unit increase	Illumina [at least 560000] (imputed)	N
981	chr18	52003657	52003658	rs8095155	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18q21.2	NR	rs8095155-A	0.3258	2E-13				NR [9056863] (imputed)	N
982	chr18	52058434	52058435	rs12960472	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	18q21.2	NR	rs12960472-A	0.2273	1E-6		0.0194	[0.012-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
984	chr18	52323617	52323618	rs8096801	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with chromosome 3 loss	253 European ancestry cases, 5,199 European ancestry controls	NA	18q21.2		rs8096801-C	0.6	8E-6		1.54		Illumina [10258281] (imputed)	N
984	chr18	52336174	52336175	rs4801001	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	18q21.2	DYNAP, RAB27B	rs4801001-T	0.42	6E-9		1.031	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
984	chr18	52391707	52391708	rs8089474	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs8089474-A	0.80431760871924	4E-9		0.010074862	[0.0067-0.0134] unit increase	NR [NR]	N
985	chr18	52438465	52438466	rs117599630	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs117599630-G	0.0288295078750754	3E-8		0.015272709	[0.0099-0.0207] unit decrease	NR [NR]	N
985	chr18	52438465	52438466	rs117599630	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs117599630-G	0.0288295078750754	4E-8		0.024253605	[0.016-0.033] unit decrease	NR [NR]	N
985	chr18	52474324	52474325	rs62094571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.2	NR	rs62094571-A	0.507294	3E-10		0.012222	[0.0084-0.016] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
985	chr18	52475161	52475162	rs7243785	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q21.2	DYNAP, RAB27B	rs7243785-G	0.23	8E-10		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
985	chr18	52479486	52479487	rs8092503	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.2	NA	rs8092503-A	0.7693	4E-17		0.0162	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
985	chr18	52479486	52479487	rs8092503	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q21.2	NR	rs8092503-A	NR	5E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
985	chr18	52479486	52479487	rs8092503	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	18q21.2	RAB27B	rs8092503-G	0.27	8E-9		0.045	[0.029-0.061] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
985	chr18	52488671	52488672	rs62091461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q21.2		rs62091461-T	NR	3E-16		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
985	chr18	52488671	52488672	rs62091461	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q21.2	NR	rs62091461-C	0.7726	2E-14		1.0204082	[1.02-1.03]	NR [8098588] (imputed)	N
985	chr18	52492251	52492252	rs12606230	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q21.2	RAB27B	rs12606230-T	0.766455	2E-14		0.0127194	[0.0095-0.016] unit decrease	Affymetrix [12370749]	N
985	chr18	52495323	52495324	rs3764512	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs3764512-T	0.225471874725859	1E-13		0.008139153	[0.006-0.0103] unit decrease	NR [NR]	N
985	chr18	52495323	52495324	rs3764512	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs3764512-T	0.225471874725859	7E-13		0.010006476	[0.0073-0.0127] unit decrease	NR [NR]	N
985	chr18	52495323	52495324	rs3764512	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs3764512-T	0.225471874725859	7E-13		0.012920828	[0.0094-0.0165] unit decrease	NR [NR]	N
985	chr18	52495323	52495324	rs3764512	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs3764512-T	0.225471874725859	3E-13		0.008329054	[0.0061-0.0106] unit decrease	NR [NR]	N
985	chr18	52500010	52500011	rs12454204	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q21.2	NA	rs12454204-T	0.229	5E-17		0.0169	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
985	chr18	52509832	52509833	rs58243949	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.2		rs58243949-T	NR	8E-14		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
985	chr18	52509832	52509833	rs58243949	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q21.2		rs58243949-?	NR	4E-12		0.0245	unit decrease	NR [NR]	N
985	chr18	52509832	52509833	rs58243949	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.2	RAB27B	rs58243949-C	0.767269	1E-13		0.0120706	[0.0089-0.0153] unit decrease	Affymetrix [12370749]	N
985	chr18	52509832	52509833	rs58243949	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.2	NR	rs58243949-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
985	chr18	52509832	52509833	rs58243949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.2		rs58243949-?	NR	2E-13				NR [~ 8900000] (imputed)	N
985	chr18	52517905	52517906	rs1833288	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	18q21.2	NR	rs1833288-A	NR	5E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
985	chr18	52517905	52517906	rs1833288	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	18q21.2	RAB27B, CCDC68	rs1833288-A	0.72	3E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
985	chr18	52523436	52523437	rs7243110	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	18q21.2	NR	rs7243110-C	0.2558	3E-8		0.0135	[0.0088-0.0182] unit decrease	Illumina [NR] (imputed)	N
985	chr18	52528687	52528688	rs1833289	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs1833289-A	0.2219	1E-8	(MTAG)	0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
985	chr18	52533037	52533038	rs11152031	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	18q21.2	CCDC68, RAB27B	rs11152031-?		2E-6	(EA)	0.2519	[0.15-0.35] unit decrease	Affymetrix [NR] (imputed)	N
985	chr18	52539133	52539134	rs12957576	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs12957576-A	0.3169	5E-8	(MTAG)	0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
985	chr18	52543278	52543279	rs145032168	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs145032168-G	0.98966	2E-13		0.353702	[0.26-0.45] increase	Affymetrix [11014269] (imputed)	N
985	chr18	52543360	52543361	rs2311126	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	18q21.2	CCDC68, RAB27B	rs2311126-?		1E-6		0.2314	[NR] unit increase	Affymetrix [NR] (imputed)	N
985	chr18	52547056	52547057	rs28687557	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs28687557-A	0.779024471968326	2E-11		0.009885286	[0.007-0.0128] unit increase	NR [NR]	N
985	chr18	52547056	52547057	rs28687557	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs28687557-A	NR	1E-9		6.096	z score increase	Affymetrix [10847151] (imputed)	N
985	chr18	52547056	52547057	rs28687557	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs28687557-G	NR	4E-8		0.0152	[0.0098-0.0206] unit decrease	Affymetrix [10847151] (imputed)	N
985	chr18	52547056	52547057	rs28687557	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	18q21.2	NR	rs28687557-A	0.7716	3E-8		0.0122	[0.0079-0.0165] unit decrease	Illumina [NR] (imputed)	N
986	chr18	52571433	52571434	rs4801109	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.2	NR	rs4801109-?	NR	2E-15				Affymetrix [NR]	N
986	chr18	52598089	52598090	rs4629059	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs4629059-G	0.222548	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
986	chr18	52598333	52598334	rs4445975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.2		rs4445975-A	NR	8E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
986	chr18	52604954	52604955	rs76197067	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.2	TCF4	rs76197067-G	5.0E-4	8E-6		2.68	[1.74-4.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
986	chr18	52605187	52605188	rs1344011	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	18q21.2	CCDC68	rs1344011-T	22.45	3E-11	(recessive)	1.11	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
986	chr18	52607300	52607301	rs72930904	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	18q21.2	CCDC68	rs72930904-C	0.84	3E-9		0.14	[0.094-0.186] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
986	chr18	52607716	52607717	rs11876384	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	18q21.2		rs11876384-?	NR	5E-9		1.35756	[1.26-1.46]	NR [663102]	N
986	chr18	52612769	52612769	rs199681604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.2	NR	rs199681604-I	0.22815	7E-11		0.015966	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
986	chr18	52625942	52625943	rs11152089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q21.2	CCDC68	rs11152089-T	0.214402	5E-10		0.017092764	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
986	chr18	52625942	52625943	rs11152089	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q21.2	NR	rs11152089-C	0.785136	2E-12		0.016473	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
986	chr18	52636090	52636091	rs4611552	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	18q21.2		rs4611552-?	NR	2E-8		5.6192026	z score increase	Affymetrix [NR] (imputed)	N
986	chr18	52642358	52642359	rs2187416	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.2	NR	rs2187416-A	0.70721	1E-14				Affymetrix, Illumina [24588908] (imputed)	N
986	chr18	52655531	52655532	rs7243821	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	18q21.2	CCDC68, TCF4	rs7243821-?	NR	7E-15		1.13	[1.096-1.165]	Illumina [13537761] (imputed)	N
987	chr18	52722377	52722378	rs56096694	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q21.2	NR	rs56096694-T	NR	1E-8		5.699	NR z score increase	NR [NR]	N
987	chr18	52723197	52723198	rs550780826	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	18q21.2	CCDC68, LINC01929	rs550780826-G	0.004	2E-8				Affymetrix [28000000] (imputed)	N
987	chr18	52734526	52734527	rs12954483	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	18q21.2	CTD-2171N6.1	rs12954483-G	NR	6E-10		0.012595	[0.0086-0.0166] unit decrease	Affymetrix [18485882] (imputed)	N
987	chr18	52734526	52734527	rs12954483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs12954483-A	0.0954	8E-15	(MTAG)	0.0237	[0.018-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
987	chr18	52737308	52737309	rs11876620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs11876620-T	0.0938	4E-14	(MTAG)	0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
987	chr18	52737308	52737309	rs11876620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs11876620-T	0.0973	2E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
987	chr18	52737308	52737309	rs11876620	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs11876620-T	0.0973	7E-11	(MTAG)	0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
987	chr18	52741517	52741518	rs7233277	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	CCDC68	rs7233277-A	NR	3E-7		1.049	[1.03-1.07]	Illumina [6627481] (imputed)	N
987	chr18	52743830	52743831	rs4257287	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	CTD-2171N6.1	rs4257287-T	0.1113	3E-11		0.021253612	[0.015-0.028] unit decrease	Affymetrix [up to 18485882] (imputed)	N
987	chr18	52743830	52743831	rs4257287	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs4257287-T	0.8878	1E-9	(MTAG)	0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
987	chr18	52743830	52743831	rs4257287	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs4257287-?	NR	2E-9		0.02217	[0.015-0.029] unit decrease	Affymetrix [10847151] (imputed)	N
987	chr18	52743830	52743831	rs4257287	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q21.2	NR	rs4257287-?	NR	1E-6		0.0084182	[0.005-0.0118] unit increase	Affymetrix [805426] (imputed)	N
987	chr18	52743830	52743831	rs4257287	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	18q21.2	NR	rs4257287-C	0.1145	8E-11		0.0287	[0.02-0.037] unit decrease	Illumina [NR] (imputed)	N
987	chr18	52744404	52744405	rs114658852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.2	Intergenic	rs114658852-C	0.9048	1E-13		0.0247	[0.018-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
987	chr18	52744404	52744405	rs114658852	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	18q21.2	NR	rs114658852-C	0.9035	4E-10		0.0196	[0.014-0.026] unit decrease	Illumina [NR] (imputed)	N
987	chr18	52744404	52744405	rs114658852	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	18q21.2	NR	rs114658852-C	0.9031	3E-11		0.0239	[0.017-0.031] unit increase	Illumina [NR] (imputed)	N
987	chr18	52746867	52746868	rs4300734	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	18q21.2	intergenic	rs4300734-?	NR	4E-8		0.0159693	[0.01-0.022] unit increase	Affymetrix [25921788] (imputed)	N
987	chr18	52747870	52747871	rs4131791	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q21.2		rs4131791-?	NR	3E-14		0.0226	unit decrease	NR [NR]	N
987	chr18	52747870	52747871	rs4131791	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q21.2	NR	rs4131791-T	NR	5E-9		5.856	NR z score decrease	NR [NR]	N
987	chr18	52747870	52747871	rs4131791	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q21.2	NR	rs4131791-T	0.4075	2E-11		0.028384494	[0.02-0.037] unit decrease	NR [NR]	N
987	chr18	52749216	52749217	rs5825114	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	18q21.2	TCF4, LOC101927273, LOC100505474	rs5825114-?	NR	5E-14		1.0752687	[1.06-1.09]	Illumina [8000000] (imputed)	N
987	chr18	52750468	52750469	rs4309482	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	18q21.2	NR	rs4309482-?		9E-6	(African)			Illumina [~ 5190000] (imputed)	N
987	chr18	52750687	52750688	rs11874716	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	18q21.2		rs11874716-?	NR	2E-8		0.017	NR unit decrease	NR [4484088] (imputed)	N
987	chr18	52750687	52750688	rs11874716	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	18q21.2	NR	rs11874716-?		2E-9				NR [8377093]	N
987	chr18	52750687	52750688	rs11874716	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	18q21.2	NR	rs11874716-?		3E-9				NR [8377093]	N
987	chr18	52750687	52750688	rs11874716	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	18q21.2	Intergenic	rs11874716-?		8E-9				NR [6786993] (imputed)	N
987	chr18	52750687	52750688	rs11874716	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	CCDC68	rs11874716-T	NR	1E-9	(EA)	1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
987	chr18	52750687	52750688	rs11874716	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	18q21.2	LOC101927229	rs11874716-T		1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
987	chr18	52750687	52750688	rs11874716	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.2	NR	rs11874716-T	NR	6E-11		1.07	[NR]	Illumina [7158791] (imputed)	N
987	chr18	52751638	52751639	rs12966052	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q21.2	NR	rs12966052-G	0.8195	4E-11		1.0193679	[1.01-1.02]	NR [8098588] (imputed)	N
987	chr18	52751707	52751708	rs12969453	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12969453-?	NR	7E-10				NR [2625067]	N
987	chr18	52751707	52751708	rs12969453	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs12969453-?	NR	3E-8		1.05012	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
987	chr18	52752016	52752017	rs12966547	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	18q21.2	CCDC68	rs12966547-?	0.588	3E-10	(Modelling analysis)			NR [1252901] (imputed)	N
987	chr18	52752016	52752017	rs12966547	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	18q21.2	CCDC68	rs12966547-G	0.58	3E-8		1.4	[1.28-1.52]	Affymetrix, Illumina [1252901] (imputed)	N
987	chr18	52752699	52752700	rs4801131	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	18q21.2	NR	rs4801131-T	0.3857	1E-10		0.07128187	[0.05-0.093] unit decrease	NR [NR]	N
987	chr18	52752699	52752700	rs4801131	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	18q21.2	TCF4	rs4801131-C	0.582	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
987	chr18	52756170	52756171	rs12962538	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs12962538-C	0.18175535624632	4E-13		0.008631227	[0.0063-0.011] unit decrease	NR [NR]	N
987	chr18	52756170	52756171	rs12962538	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs12962538-C	0.18175535624632	6E-13		0.010565196	[0.0077-0.0134] unit decrease	NR [NR]	N
987	chr18	52756170	52756171	rs12962538	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs12962538-C	0.18175535624632	4E-13		0.013774368	[0.01-0.017] unit decrease	NR [NR]	N
987	chr18	52756170	52756171	rs12962538	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs12962538-C	0.18175535624632	1E-12		0.01122978	[0.0081-0.0143] unit decrease	NR [NR]	N
987	chr18	52756170	52756171	rs12962538	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs12962538-C	0.18175535624632	4E-13		0.008790038	[0.0064-0.0112] unit decrease	NR [NR]	N
987	chr18	52765282	52765283	rs56403421	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q21.2	CTD, 2171N6.1	rs56403421-A	0.3499	3E-15		0.018880887	[0.013-0.024] unit decrease	NR [9417325] (imputed)	N
987	chr18	52765282	52765283	rs56403421	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	18q21.2	NR	rs56403421-C	0.3309	4E-10		0.01207	[0.0083-0.0159] unit increase	NR [8968716] (imputed)	N
987	chr18	52765282	52765283	rs56403421	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	18q21.2	intergenic	rs56403421-?	NR	3E-11		0.00812276	[0.0057-0.0105] unit decrease	Affymetrix [NR] (imputed)	N
987	chr18	52765282	52765283	rs56403421	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	CTD-2171N6.1	rs56403421-A	NR	5E-11		0.011422	[0.008-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
987	chr18	52765282	52765283	rs56403421	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q21.2	NR	rs56403421-C	0.331	3E-10		0.00729883	[0.005-0.0096] unit increase	NR [9732723] (imputed)	N
987	chr18	52765282	52765283	rs56403421	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs56403421-A	NR	7E-11		6.53	z score decrease	Affymetrix [10847151] (imputed)	N
987	chr18	52765282	52765283	rs56403421	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs56403421-?	NR	2E-10		0.01579	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
987	chr18	52765282	52765283	rs56403421	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	TCF4	rs56403421-A	0.327025	1E-13		7.42	z score decrease	NR [10847151] (imputed)	N
987	chr18	52767517	52767518	rs145838709	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	18q21.2	LOC101927229	rs145838709-?	NR	7E-6		0.37	unit decrease	Illumina [NR]	N
987	chr18	52767517	52767518	rs145838709	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	18q21.2	LOC101927229	rs145838709-?	NR	1E-6		0.4	unit decrease	Illumina [NR]	N
987	chr18	52767517	52767518	rs145838709	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs145838709-C	NR	3E-8		0.48	unit decrease	Illumina [NR]	N
987	chr18	52767517	52767518	rs145838709	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	18q21.2	CCDC68, LINC01929	rs145838709-C	0.9868	5E-11		0.3983	[0.27-0.53] unit increase	Affymetrix [~ 11900000] (imputed)	N
987	chr18	52767976	52767977	rs12963231	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	18q21.2	NR	rs12963231-?		2E-10				NR [520857]	N
987	chr18	52767976	52767977	rs12963231	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	18q21.2	NR	rs12963231-?		3E-8				NR [11140414]	N
987	chr18	52767976	52767977	rs12963231	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs12963231-A	0.335188949129347	6E-12		0.010848809	[0.0078-0.0139] unit increase	NR [NR]	N
987	chr18	52767976	52767977	rs12963231	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs12963231-A	0.335188949129347	6E-12		0.0069344565	[0.005-0.0089] unit increase	NR [NR]	N
987	chr18	52767976	52767977	rs12963231	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs12963231-A	NR	3E-8		5.525	z score increase	Affymetrix [10847151] (imputed)	N
987	chr18	52770670	52770671	rs11152212	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q21.2	NR	rs11152212-A	0.324748	8E-11		6.5	z score increase	NR [10847151] (imputed)	N
987	chr18	52785353	52785354	rs12967831	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs12967831-A	0.335190588136391	1E-9		0.008443728	[0.0057-0.0112] unit increase	NR [NR]	N
987	chr18	52788876	52788877	rs12955614	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs12955614-C	0.334898711642287	1E-8		0.0077923373	[0.0051-0.0105] unit increase	NR [NR]	N
987	chr18	52789438	52789439	rs4570961	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	18q21.2	NR	rs4570961-T	0.324152	1E-9		6.09	z score increase	NR [~ 10847151] (imputed)	N
987	chr18	52795083	52795084	rs34220720	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q21.2	intergenic	rs34220720-T	0.67484	5E-11		6.569	z score decrease	Illumina [18485882] (imputed)	N
987	chr18	52818008	52818009	rs2051293	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs2051293-G	0.340045008176814	3E-10		0.0061286157	[0.0042-0.008] unit increase	NR [NR]	N
987	chr18	52821062	52821063	rs1011339	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs1011339-A	NR	3E-9		5.947	z score decrease	Affymetrix [10847151] (imputed)	N
987	chr18	52821123	52821124	rs9951150	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	18q21.2	TCF4	rs9951150-A	0.46	7E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
987	chr18	52821123	52821124	rs9951150	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	18q21.2	intergenic	rs9951150-A		6E-7	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
988	chr18	52840924	52840925	rs4801146	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q21.2	NR	rs4801146-C	0.4922	1E-7		0.0063	[0.0039-0.0087] unit increase	NR [7666894] (imputed)	N
988	chr18	52844765	52844766	rs11665450	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 46)	4,680 European ancestry individuals	3,566 European ancestry individuals	18q21.2		rs11665450-T	0.500433651	1E-10				Illumina [7417619] (imputed)	N
988	chr18	52857731	52857732	rs1262465	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q21.2	NR	rs1262465-A	0.5	2E-7		0.018504232	[0.012-0.025] unit decrease	Affymetrix [up to 6544775] (imputed)	N
988	chr18	52859260	52859261	rs1125313	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	18q21.2	TCF4	rs1125313-A	0.501	4E-9		0.359	[0.24-0.48] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
988	chr18	52863107	52863108	rs1970671	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	18q21.2	CCDC68, TCF4	rs1970671-G	0.29	3E-6		1.37	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
988	chr18	52866790	52866791	rs1261078	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	18q21.2	NR	rs1261078-A	0.95	6E-12		1.07	[1.05, 1.09]	Affymetrix [39302896] (imputed)	N
988	chr18	52866790	52866791	rs1261078	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	18q21.2	TCF4	rs1261078-G	0.05	6E-12		0.016672	[0.012-0.021] unit decrease	NR [16367095] (imputed)	N
988	chr18	52872705	52872706	rs4801147	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	18q21.2	TCF4	rs4801147-T	0.5579	9E-9		0.013023804	[0.0086-0.0175] unit increase	Affymetrix [11514463] (imputed)	N
988	chr18	52873316	52873317	rs1942262	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	18q21.2	CCDC68/TCF4	rs1942262-A	0.292258	4E-14		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
988	chr18	52873316	52873317	rs1942262	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	18q21.2	CCDC68/TCF4	rs1942262-A	0.292258	1E-11		1.04	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
988	chr18	52874660	52874661	rs9957512	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs9957512-T	0.388298013748732	5E-10		0.005859356	[0.004-0.0077] unit increase	NR [NR]	N
988	chr18	52895530	52895531	rs8766	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q21.2	NA	rs8766-C	0.3785	9E-9	(Female)	1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
988	chr18	52895723	52895724	rs144033370	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs144033370-G	NR	6E-10		0.502	unit decrease	Illumina [NR]	N
988	chr18	52898218	52898219	rs13381817	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs13381817-?	NR	2E-8		0.02374	[0.015-0.032] unit increase	Affymetrix [10847151] (imputed)	N
988	chr18	52902931	52902932	rs188837888	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs188837888-C		3E-9		0.902	[NR] unit decrease	Illumina [NR]	N
988	chr18	52903084	52903085	rs1261070	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	18q21.2	NR	rs1261070-?		1E-8				NR [11140414]	N
988	chr18	52903084	52903085	rs1261070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs1261070-A	NR	7E-9		5.795	z score decrease	Affymetrix [10847151] (imputed)	N
988	chr18	52903084	52903085	rs1261070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs1261070-A	NR	1E-8		5.701	z score decrease	Affymetrix [10847151] (imputed)	N
988	chr18	52903084	52903085	rs1261070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs1261070-?	NR	6E-12		0.02838	[0.02-0.036] unit decrease	Affymetrix [10847151] (imputed)	N
988	chr18	52903084	52903085	rs1261070	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q21.2	TCF4	rs1261070-A	0.0831335	5E-9		5.84	z score decrease	NR [10847151] (imputed)	N
988	chr18	52903599	52903600	rs73487020	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	18q21.2	TCF4	rs73487020-G	0.1093	3E-7		0.0125	[0.0078-0.0172] unit increase	Affymetrix [~ 7740000] (imputed)	N
988	chr18	52906829	52906830	rs60565673	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	18q21.2		rs60565673-G	0.41	1E-15		8.02	z score increase	Affymetrix [9061022] (imputed)	N
988	chr18	52906829	52906830	rs60565673	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q21.2	NR	rs60565673-G	0.3789	2E-12		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
988	chr18	52920949	52920950	rs1261093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs1261093-?	NR	4E-8				NR [NR]	N
988	chr18	52920949	52920950	rs1261093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs1261093-?	NR	4E-9				NR [NR]	N
988	chr18	52920949	52920950	rs1261093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs1261093-?	NR	5E-9				NR [NR]	N
988	chr18	52920949	52920950	rs1261093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs1261093-?	NR	2E-9				NR [NR]	N
988	chr18	52920949	52920950	rs1261093	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	18q21.2	TCF4	rs1261093-?		4E-8				NR [7428630] (imputed)	N
988	chr18	52920949	52920950	rs1261093	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Social science traits (pleiotropy) (HIPO component 1)	up to 630,791 European ancestry individuals	NA	18q21.2	TCF4	rs1261093-?	NR	4E-9				NR [2100000]	N
988	chr18	52931762	52931763	rs1261134	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	18q21.2		rs1261134-T	0.4	1E-17		8.53	z score increase	Affymetrix [9061022] (imputed)	N
988	chr18	52931762	52931763	rs1261134	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	18q21.2	NR	rs1261134-T	0.3707	1E-17				NR [9056863] (imputed)	N
988	chr18	52938368	52938369	rs1261114	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q21.2		rs1261114-A	0.4	5E-24		10.11	z score increase	Affymetrix [9061022] (imputed)	N
988	chr18	52938368	52938369	rs1261114	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	18q21.2	NR	rs1261114-A	0.3743	1E-13				NR [9056863] (imputed)	N
988	chr18	52938368	52938369	rs1261114	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs1261114-?	NR	5E-8		0.01303	[0.0084-0.0177] unit increase	Affymetrix [10847151] (imputed)	N
988	chr18	52938368	52938369	rs1261114	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	TCF4	rs1261114-A	0.380311	7E-13		7.18	z score increase	NR [10847151] (imputed)	N
988	chr18	52949656	52949657	rs1261117	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	18q21.2	TCF4	rs1261117-T	0.06	3E-10	(EA)	1.6	[NR]	NR [1085772] (imputed)	N
989	chr18	52954420	52954421	rs1262463	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	18q21.2	Intergenic	rs1262463-?		5E-6		1.595	[NR]	Affymetrix [492217] (imputed)	N
989	chr18	52955674	52955675	rs8090418	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	18q21.2	TCF4	rs8090418-T		6E-6		0.909	[0.873-0.947]	Illumina [4498586] (imputed)	N
989	chr18	52982457	52982458	rs893946	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q21.2	TCF4	rs893946-T	0.352	2E-12		0.0087	[0.0063-0.0111] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
989	chr18	52982457	52982458	rs893946	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs893946-T	NR	4E-8		5.499	z score increase	Affymetrix [10847151] (imputed)	N
989	chr18	52987160	52987161	rs76641465	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	18q21.2	NR	rs76641465-?		4E-8				NR [8377093]	N
989	chr18	52987160	52987161	rs76641465	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	18q21.2	NR	rs76641465-?		4E-8				NR [8377093]	N
989	chr18	53005933	53005934	rs11659559	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q21.2	TCF4	rs11659559-A	NR	1E-10		0.0788002	NR unit increase	NR [NR] (imputed)	N
989	chr18	53013946	53013947	rs1660237	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs1660237-T	0.420334107545533	7E-15		0.00893267	[0.0067-0.0112] unit increase	NR [NR]	N
989	chr18	53013946	53013947	rs1660237	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs1660237-T	0.420334107545533	8E-12		0.009442675	[0.0067-0.0121] unit increase	NR [NR]	N
989	chr18	53026356	53026357	rs1631486	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	18q21.2	TCF4	rs1631486-A	0.31	4E-6		1.18	[1.10-1.26]	Affymetrix [~ 2000000] (imputed)	N
989	chr18	53027722	53027723	rs150202082	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	18q21.2	TCF4	rs150202082-T	0.027	3E-8		0.47	[0.3-0.64] mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
989	chr18	53027722	53027723	rs150202082	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs150202082-C	NR	2E-10		0.514	unit decrease	Illumina [NR]	N
989	chr18	53040065	53040066	rs1440476	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	NR	rs1440476-C	0.393295	4E-12		6.94	z score decrease	NR [10847151] (imputed)	N
989	chr18	53041902	53041903	rs1011392	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs1011392-A	0.673	2E-8		0.014206584	[0.0093-0.0191] unit increase	Affymetrix [11515109] (imputed)	N
989	chr18	53041902	53041903	rs1011392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs1011392-A	0.6736	2E-21	(MTAG)	0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
989	chr18	53041902	53041903	rs1011392	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.2	Intergenic	rs1011392-A	0.6736	5E-23		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
989	chr18	53045197	53045198	rs1788030	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	18q21.2	TCF4	rs1788030-T	0.4581	5E-9		0.013104249	[0.0087-0.0175] unit decrease	Affymetrix [11514936] (imputed)	N
989	chr18	53048528	53048529	rs149344987	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs149344987-A	0.9729	2E-8		0.040949557	[0.027-0.055] unit decrease	Affymetrix [11515109] (imputed)	N
989	chr18	53048677	53048678	rs1788025	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	18q21.2	TCF4	rs1788025-A	0.5974	3E-7		0.0053	[0.0033-0.0073] unit increase	Affymetrix [~ 7740000] (imputed)	N
989	chr18	53050488	53050489	rs17594358	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q21.2	TCF4	rs17594358-G	NR	2E-9		0.0742359	NR unit increase	NR [NR] (imputed)	N
989	chr18	53050645	53050646	rs72926932	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs72926932-A	0.917	2E-14		0.018	[0.014-0.022] unit increase	NR [NR] (imputed)	N
989	chr18	53050645	53050646	rs72926932	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q21.2	NR	rs72926932-C	0.0783	8E-20		0.0749	[0.059-0.091] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
989	chr18	53050645	53050646	rs72926932	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q21.2	NR	rs72926932-C	0.0755	4E-20		0.0733	[0.058-0.089] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
989	chr18	53050645	53050646	rs72926932	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.2	TCF4	rs72926932-C	0.0839	1E-14		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
989	chr18	53050645	53050646	rs72926932	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.2	NR	rs72926932-A	NR	2E-6		1.1	[NR]	Illumina [7158791] (imputed)	N
989	chr18	53052168	53052169	rs9950000	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	18q21.2	NR	rs9950000-T	0.395	9E-10		0.009117697	[0.0062-0.012] unit decrease	NR [~ 10000000] (imputed)	N
989	chr18	53053896	53053897	rs9320010	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	18q21.2	TCF4	rs9320010-A	0.6	1E-10		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
989	chr18	53057187	53057188	rs11152363	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs11152363-G	NR	1E-12		0.01235	[0.0089-0.0158] unit increase	Affymetrix [18485882] (imputed)	N
989	chr18	53057187	53057188	rs11152363	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs11152363-?	NR	1E-10		0.01941	[0.013-0.025] unit increase	Affymetrix [10847151] (imputed)	N
989	chr18	53058237	53058238	rs17594526	19571811	Purcell SM	2009-07-01	Nature	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls	18q21.2	TCF4	rs17594526-T	0.03	1E-7		1.44		Affymetrix [739995]	N
989	chr18	53059319	53059320	rs28602385	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q21.2	TCF4	rs28602385-A	0.3892	6E-10		0.0107271	[0.0073-0.0141] unit increase	Affymetrix [11880941] (imputed)	N
989	chr18	53059319	53059320	rs28602385	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	18q21.2	TCF4	rs28602385-A	0.3881	3E-8		0.014619326	[0.0094-0.0198] unit decrease	Affymetrix [~ 11515000] (imputed)	N
989	chr18	53059319	53059320	rs28602385	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs28602385-A	NR	3E-10		6.282	z score increase	Affymetrix [10847151] (imputed)	N
989	chr18	53059747	53059748	rs12607679	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	18q21.2		rs12607679-C	0.2595	1E-10		0.01825	[0.013-0.024] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
989	chr18	53063718	53063719	rs17594665	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	18q21.2		rs17594665-?	NR	6E-9		0.02	NR unit increase	NR [4428082] (imputed)	N
989	chr18	53064490	53064491	rs2872041	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	18q21.2	NR	rs2872041-A	0.455	4E-11		0.00875237	[0.0062-0.0114] unit decrease	NR [~ 9732723] (imputed)	N
989	chr18	53066327	53066328	rs11152369	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	18q21.2	TCF4	rs11152369-A	NR	2E-7	(Modelling analysis)	1.19	[1.12-1.28]	NR [1252901] (imputed)	N
989	chr18	53067953	53067954	rs7235757	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs7235757-G	NR	1E-9		0.010633	[0.0072-0.0141] unit increase	Affymetrix [18485882] (imputed)	N
989	chr18	53067953	53067954	rs7235757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q21.2		rs7235757-?	NR	7E-15				NR [~ 8900000] (imputed)	N
989	chr18	53067953	53067954	rs7235757	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	18q21.2	intergenic	rs7235757-A	0.32145	9E-11		6.482	z score increase	Illumina [18485882] (imputed)	N
989	chr18	53083590	53083591	rs2860511	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs2860511-A	NR	3E-10		6.327	z score increase	Affymetrix [10847151] (imputed)	N
989	chr18	53083864	53083865	rs2958162	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	18q21.2		rs2958162-T	0.68807	3E-8		0.0516855	[0.032-0.071] increase	Affymetrix [11014269] (imputed)	N
989	chr18	53083864	53083865	rs2958162	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs2958162-C	0.308557235080323	3E-15		0.012605724	[0.0095-0.0157] unit increase	NR [NR]	N
989	chr18	53083864	53083865	rs2958162	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs2958162-C	0.308557235080323	3E-15		0.008047269	[0.0061-0.01] unit increase	NR [NR]	N
990	chr18	53084299	53084300	rs2919451	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	18q21.2	TCF4	rs2919451-T	0.3912	1E-13		0.014747182	[0.011-0.019] unit decrease	Illumina [9339358] (imputed)	N
990	chr18	53085126	53085127	rs72926972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q21.2		rs72926972-A	NR	5E-9		0.0248	[0.017-0.033] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
990	chr18	53087983	53087984	rs72926982	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	18q21.2	NR	rs72926982-A	0.0759	5E-9		0.02274412	[0.015-0.03] unit decrease	Affymetrix [10613246] (imputed)	N
990	chr18	53087983	53087984	rs72926982	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	18q21.2	NR	rs72926982-A	0.0764	3E-9		0.01931871	[0.013-0.026] unit decrease	Affymetrix [NR] (imputed)	N
990	chr18	53092883	53092884	rs73477270	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q21.2	NR	rs73477270-?	NR	8E-9		1.1941154	[1.13-1.25]	Affymetrix, Illumina [12447948] (imputed)	N
990	chr18	53093366	53093367	rs77540208	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	18q21.2	NA	rs77540208-T		4E-13		0.0137974	[0.01-0.018] unit decrease	Illumina [13288253] (imputed)	N
990	chr18	53093723	53093724	rs8095770	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q21.2	TCF4	rs8095770-C	NR	8E-10		0.0706182	NR unit increase	NR [NR] (imputed)	N
990	chr18	53099011	53099012	rs12967143	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q21.2		rs12967143-?	NR	2E-17		0.0271	unit decrease	NR [NR]	N
990	chr18	53099011	53099012	rs12967143	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q21.2	NR	rs12967143-C	NR	9E-10		6.13	NR z score decrease	NR [NR]	N
990	chr18	53099011	53099012	rs12967143	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q21.2	NR	rs12967143-G	0.3016	2E-27		1.025641	[1.02-1.03]	NR [8098588] (imputed)	N
990	chr18	53099011	53099012	rs12967143	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs12967143-C	0.701659358198319	7E-16		0.008096604	[0.0061-0.0101] unit decrease	NR [NR]	N
990	chr18	53099011	53099012	rs12967143	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q21.2	NR	rs12967143-C	0.7016	6E-8		0.007	[0.0045-0.0095] unit decrease	NR [7666894] (imputed)	N
990	chr18	53099020	53099021	rs12963334	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs12963334-?	NR	4E-8				NR [NR]	N
990	chr18	53099020	53099021	rs12963334	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs12963334-?	NR	3E-9				NR [NR]	N
990	chr18	53099092	53099093	rs12963463	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs12963463-C	NR	9E-11		0.011385	[0.0079-0.0148] unit decrease	Affymetrix [18485882] (imputed)	N
990	chr18	53099092	53099093	rs12963463	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	18q21.2	TCF4	rs12963463-C	NR	2E-11		1.029		NR [14661600] (imputed)	N
990	chr18	53099092	53099093	rs12963463	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs12963463-?	NR	3E-8		0.01434	[0.0093-0.0194] unit increase	Affymetrix [10847151] (imputed)	N
990	chr18	53101597	53101598	rs12958048	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Major depressive disorder (MTAG)	119,754 European ancestry individuals	NA			rs12958048-?	NR	1E-9				NR [2625067]	N
990	chr18	53101597	53101598	rs12958048	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA		NR	rs12958048-?		4E-9				NR [520857]	N
990	chr18	53101597	53101598	rs12958048	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA		NR	rs12958048-A	NR	5E-14		1.04	[1.03-1.05]	NR [NR] (imputed)	N
990	chr18	53101597	53101598	rs12958048	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		TCF4	rs12958048-?		1E-12				NR [6786993] (imputed)	N
990	chr18	53101597	53101598	rs12958048	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA		TCF4	rs12958048-A	0.332223	1E-9		0.0120149	[0.0082-0.0159] unit decrease	NR [13737936] (imputed)	N
990	chr18	53101597	53101598	rs12958048	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA		NR	rs12958048-A	NR	3E-12		6.976	z score increase	Affymetrix [10847151] (imputed)	N
990	chr18	53101597	53101598	rs12958048	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA		TCF4, MIR4529	rs12958048-A	0.33	4E-11		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
990	chr18	53104252	53104253	rs7228159	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs7228159-A	0.337	2E-15	(MTAG)	0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53104252	53104253	rs7228159	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs7228159-A	0.3424	4E-8	(MTAG)	0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53104252	53104253	rs7228159	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	18q21.2	TCF4	rs7228159-A	0.348188	1E-9		6.046	unit increase	NR [10847151] (imputed)	N
990	chr18	53109034	53109035	rs7231748	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	18q21.2	TCF4	rs7231748-A	0.306975	7E-12		6.87	z score decrease	NR [~ 10847151] (imputed)	N
990	chr18	53109201	53109202	rs10503002	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs10503002-T	NR	1E-10		6.471	z score increase	Affymetrix [10847151] (imputed)	N
990	chr18	53115878	53115879	rs1452789	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	18q21.2	TCF4	rs1452789-A	0.381593	7E-11		6.52	z score decrease	NR [10847151] (imputed)	N
990	chr18	53117303	53117304	rs1452788	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs1452788-A	NR	5E-8		5.454	z score decrease	Affymetrix [10847151] (imputed)	N
990	chr18	53118461	53118462	rs78803556	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q21.2	TCF4	rs78803556-A	NR	2E-8		0.0698925	NR unit increase	NR [NR] (imputed)	N
990	chr18	53123030	53123031	rs896686	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs896686-?	NR	5E-8		0.01717	[0.011-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
990	chr18	53125434	53125435	rs2924321	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs2924321-A	NR	6E-9		5.816	z score decrease	Affymetrix [10847151] (imputed)	N
990	chr18	53126919	53126920	rs144933108	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs144933108-C		3E-9		0.902	[NR] unit decrease	Illumina [NR]	N
990	chr18	53133739	53133740	rs2924328	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.2	NR	rs2924328-T	NR	3E-9		5.922	z score increase	Affymetrix [10847151] (imputed)	N
990	chr18	53135893	53135894	rs2924329	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q21.2	TCF4, RP11, 619L19.1	rs2924329-G	0.2813	5E-13		0.018135639	[0.012-0.024] unit increase	NR [9417325] (imputed)	N
990	chr18	53135893	53135894	rs2924329	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q21.2	NR	rs2924329-A	0.2875	2E-12		0.032578725	[0.024-0.042] unit decrease	NR [NR]	N
990	chr18	53149020	53149021	rs2958182	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs2958182-A	0.3414	3E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
990	chr18	53150075	53150076	rs2958183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.2		rs2958183-G	NR	3E-11		0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
990	chr18	53150075	53150076	rs2958183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.2		rs2958183-?	NR	1E-15				NR [~ 8900000] (imputed)	N
990	chr18	53150075	53150076	rs2958183	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q21.2		rs2958183-?	NR	5E-14				NR [~ 8900000] (imputed)	N
990	chr18	53151149	53151150	rs72930755	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	18q21.2	TCF4	rs72930755-T	0.9465	6E-9		0.03336542	[0.022-0.045] unit increase	Affymetrix [~ 11515000] (imputed)	N
990	chr18	53151850	53151851	rs2958184	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.2	NR	rs2958184-C	0.285054	6E-23		0.0337068	[0.027-0.04] unit increase	NR [19129689] (imputed)	N
990	chr18	53154166	53154167	rs17596722	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.2		rs17596722-T	0.2006	3E-11		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
990	chr18	53154886	53154887	rs72930763	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q21.2	TCF4	rs72930763-A	0.948	1E-10		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
990	chr18	53155001	53155002	rs9960767	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	18q21.2	TCF4	rs9960767-C	0.06	4E-9		1.23	[NR]	Illumina [314868]	N
990	chr18	53159914	53159915	rs72930774	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs72930774-A	0.9465	2E-15		0.04191511	[0.032-0.052] unit increase	Affymetrix [11515109] (imputed)	N
990	chr18	53164692	53164693	rs4801157	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	18q21.2	TCF4	rs4801157-C	0.1769	3E-14		0.021962332	[0.015-0.028] unit decrease	NR [9417325] (imputed)	N
990	chr18	53164692	53164693	rs4801157	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	18q21.2	NR	rs4801157-?		4E-8				NR [11140414]	N
990	chr18	53164692	53164693	rs4801157	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs4801157-C	NR	7E-11		0.01136	[0.0079-0.0148] unit increase	Affymetrix [18485882] (imputed)	N
990	chr18	53164692	53164693	rs4801157	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	18q21.2	NR	rs4801157-T	NR	4E-8		5.495	z score increase	Affymetrix [10847151] (imputed)	N
990	chr18	53164692	53164693	rs4801157	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs4801157-?	NR	2E-10		0.01921	[0.013-0.025] unit increase	Affymetrix [10847151] (imputed)	N
990	chr18	53166593	53166594	rs17596995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.2		rs17596995-?	NR	4E-9				NR [~ 8900000] (imputed)	N
990	chr18	53167519	53167520	rs2060886	33724339	Wang MH	2021-03-16	Inflamm Bowel Dis	Novel Genetic Variant Predicts Surgical Recurrence Risk in Crohn's Disease Patients.	Surgical recurrence in Crohn's disease	132 European ancestry cases, 240 European ancestry controls	NA	18q21.2	TCF4	rs2060886-C	0.37	6E-6		2.02	[1.49-2.74]	Illumina [213386]	N
990	chr18	53183395	53183396	rs624244	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	18q21.2	TCF4	rs624244-A	0.6597	7E-10		0.01678442	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
990	chr18	53183395	53183396	rs624244	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q21.2	TCF4	rs624244-A	0.655	2E-14		0.0095	[0.0071-0.0119] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
990	chr18	53186910	53186911	rs72932713	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q21.2		rs72932713-C	0.057085	3E-6		0.067066	[0.039-0.095] unit decrease	Affymetrix [15580782] (imputed)	N
990	chr18	53186910	53186911	rs72932713	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	18q21.2	TCF4	rs72932713-T	0.9429	5E-17		0.2496	[0.19-0.31] unit increase	Affymetrix [~ 11900000] (imputed)	N
990	chr18	53194960	53194961	rs17512836	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	18q21.2	TCF4	rs17512836-C	0.02	1E-6		1.23	[1.14-1.31]	Affymetrix, Illumina [1252901] (imputed)	N
990	chr18	53198835	53198836	rs619466	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs619466-A	NR	1E-8		0.0098308	[0.0065-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
990	chr18	53198835	53198836	rs619466	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	18q21.2	TCF4	rs619466-A	0.0938	1E-10		0.024843378	[0.017-0.032] unit increase	Affymetrix [11514463] (imputed)	N
990	chr18	53198835	53198836	rs619466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs619466-G	0.902157856731975	2E-12		0.0108430665	[0.0078-0.0139] unit increase	NR [NR]	N
990	chr18	53198835	53198836	rs619466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs619466-G	0.902157856731975	4E-12		0.013152411	[0.0094-0.0169] unit increase	NR [NR]	N
990	chr18	53198835	53198836	rs619466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs619466-G	0.902157856731975	3E-12		0.0171336	[0.012-0.022] unit increase	NR [NR]	N
990	chr18	53198835	53198836	rs619466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs619466-G	0.902157856731975	3E-12		0.010945462	[0.0079-0.014] unit increase	NR [NR]	N
990	chr18	53200116	53200117	rs9636107	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs9636107-?	NR	1E-12				NR [2625067]	N
990	chr18	53200116	53200117	rs9636107	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs9636107-A	0.5099	2E-13		0.07952187	[0.058-0.101] unit decrease	NR [NR]	N
990	chr18	53200116	53200117	rs9636107	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs9636107-?		1E-11				NR [8377093]	N
990	chr18	53200116	53200117	rs9636107	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA		NR	rs9636107-?		8E-11				NR [8377093]	N
990	chr18	53200116	53200117	rs9636107	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		TCF4	rs9636107-?		3E-10				NR [6786993] (imputed)	N
990	chr18	53200116	53200117	rs9636107	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs9636107-?	NR	2E-9		1.0583354	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
990	chr18	53200116	53200117	rs9636107	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		TCF4	rs9636107-?	NR	6E-13		0.014222787	[0.01-0.018] unit increase	NR [7306098]	N
990	chr18	53200116	53200117	rs9636107	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs9636107-?	NR	1E-12				Illumina [up to 5582932] (imputed)	N
990	chr18	53200116	53200117	rs9636107	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		TCF4	rs9636107-G	NR	2E-13	(EA)	1.083	[1.06-1.1]	Illumina [6627481] (imputed)	N
990	chr18	53200116	53200117	rs9636107	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		TCF4, TCF4-AS1	rs9636107-?		5E-11		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
990	chr18	53200116	53200117	rs9636107	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs9636107-G	NR	1E-12		1.0752687	[NR]	Illumina [7158791] (imputed)	N
990	chr18	53200116	53200117	rs9636107	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		TCF4	rs9636107-G	0.497	3E-12		1.0752687	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
990	chr18	53201479	53201480	rs148138116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	18q21.2	TCF4	rs148138116-T	0.997	3E-6	(AA)	0.175	unit increase	Illumina [NR] (imputed)	N
990	chr18	53204863	53204864	rs611439	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs611439-?	NR	6E-12		0.02861	[0.02-0.037] unit decrease	Affymetrix [10847151] (imputed)	N
990	chr18	53205937	53205938	rs17597926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q21.2		rs17597926-A	NR	9E-10		0.0377	[0.026-0.05] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
990	chr18	53207206	53207207	rs1452787	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	18q21.2		rs1452787-?	NR	2E-12		0.0228	unit decrease	NR [NR]	N
990	chr18	53207206	53207207	rs1452787	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	18q21.2	NR	rs1452787-G	0.284287965832506	9E-10		0.007771398	[0.0053-0.0103] unit increase	NR [NR]	N
990	chr18	53207206	53207207	rs1452787	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q21.2	NR	rs1452787-G	0.284287965832506	4E-10		0.010135256	[0.0069-0.0133] unit increase	NR [NR]	N
990	chr18	53207206	53207207	rs1452787	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs1452787-G	0.284287965832506	2E-8		0.008225876	[0.0053-0.0111] unit increase	NR [NR]	N
990	chr18	53207206	53207207	rs1452787	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q21.2	NR	rs1452787-G	0.284287965832506	5E-10		0.0064917565	[0.0045-0.0085] unit increase	NR [NR]	N
990	chr18	53207206	53207207	rs1452787	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	18q21.2	NR	rs1452787-G	0.2744	2E-7		0.0068	[0.0043-0.0093] unit increase	NR [7666894] (imputed)	N
990	chr18	53207206	53207207	rs1452787	22821403	Ellinghaus D	2012-07-23	Hepatology	Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.	Sclerosing cholangitis and ulcerative colitis (combined)	Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls	1,012 European ancestry primary sclerosing cholangitis cases, 4,444 European ancestry ulcerative colitis cases, 11,659 European ancestry controls	18q21.2	TCF4	rs1452787-A	0.72	3E-8	(PSC)	1.33	[1.20-1.47]	Affymetrix [up to 1279891] (imputed)	N
990	chr18	53210301	53210302	rs613872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.2	NR	rs613872-T	0.827678	1E-11		0.016622	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
990	chr18	53210301	53210302	rs613872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q21.2	NR	rs613872-T	0.827393	3E-12		0.017322	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
990	chr18	53210301	53210302	rs613872	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q21.2	GRB10	rs613872-?		8E-9				NR [7428630] (imputed)	N
990	chr18	53210301	53210302	rs613872	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.2	NR	rs613872-G	0.173524	9E-9		0.0154102	[0.01-0.021] unit decrease	NR [NR]	N
990	chr18	53210301	53210302	rs613872	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	TCF4	rs613872-T	0.1723	6E-11		0.017662127	[0.012-0.023] unit decrease	Affymetrix [up to 18485882] (imputed)	N
990	chr18	53210301	53210302	rs613872	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	18q21.2	TCF4	rs613872-?	NR	1E-14		0.0116835	[0.0087-0.0146] unit decrease	Affymetrix [NR] (imputed)	N
990	chr18	53210301	53210302	rs613872	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	18q21.2	TCF4	rs613872-G	NR	2E-9		0.010309	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
990	chr18	53210301	53210302	rs613872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q21.2		rs613872-?	NR	1E-12				NR [~ 8900000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.2	NR	rs613872-G	0.17354	5E-8		0.0223103	[0.014-0.03] unit increase	NR [19129689] (imputed)	N
990	chr18	53210301	53210302	rs613872	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q21.2	NA	rs613872-T	0.8281	1E-10		0.0146	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs613872-T	0.8247	8E-14	(MTAG)	0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.2	Intergenic	rs613872-G	0.1753	5E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs613872-T	0.8247	1E-18	(MTAG)	0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.2		rs613872-T	0.8285	2E-18		0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs613872-T	0.8285	9E-20	(MTAG)	0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53210301	53210302	rs613872	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.2	Intergenic	rs613872-T	0.8258	2E-10	(MTAG)	0.0192	[0.013-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
990	chr18	53210301	53210302	rs613872	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	18q21.2	TCF4, MIR4529	rs613872-G	0.173571	4E-17		0.022766946	[0.017-0.028] unit decrease	NR [NR] (imputed)	N
990	chr18	53210301	53210302	rs613872	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	18q21.2	TCF4, MIR4529	rs613872-G	0.174	5E-14		0.008	[0.0058-0.0102] unit decrease	NR [NR] (imputed)	N
990	chr18	53210301	53210302	rs613872	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Ability to confide in someone	64,505 European ancestry cases, 238,062 European ancestry controls	NA	18q21.2	TCF4, MIR4529	rs613872-G	0.174	2E-9		0.0083	[-0.00797-0.02457] unit decrease	NR [NR] (imputed)	N
990	chr18	53210301	53210302	rs613872	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	TCF4	rs613872-T	0.16898	2E-12		7.06	z score increase	NR [10847151] (imputed)	N
990	chr18	53210301	53210302	rs613872	20825314	Baratz KH	2010-09-09	N Engl J Med	E2-2 protein and Fuchs's corneal dystrophy.	Fuchs's corneal dystrophy	130 European ancestry cases, 260 European ancestry controls	150 cases, 150 controls	18q21.2	TCF4	rs613872-G	0.15	1E-18		5.47	[3.75-7.99]	Illumina [~ 370000]	N
990	chr18	53213325	53213326	rs12607857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q21.2		rs12607857-?	NR	2E-10				NR [~ 8900000] (imputed)	N
990	chr18	53214864	53214865	rs2123392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q21.2		rs2123392-C	NR	3E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
991	chr18	53227647	53227648	rs584564	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	18q21.2	NR	rs584564-G	0.911656213550051	1E-11		0.014629658	[0.01-0.019] unit increase	NR [NR]	N
991	chr18	53230649	53230650	rs66791238	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.2		rs66791238-T	0.7917	3E-8		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
991	chr18	53230858	53230859	rs28607662	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	18q21.2	TCF4	rs28607662-C	NR	5E-6		1.11	[NR]	Illumina [20370935] (imputed)	N
991	chr18	53230858	53230859	rs28607662	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q21.2	TCF4	rs28607662-C	0.1	3E-8		1.08	[1.05-1.11]	Illumina [20370935] (imputed)	N
991	chr18	53242136	53242137	rs41396445	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q21.2	TCF4	rs41396445-?		4E-12				Affymetrix, Illumina [NR] (imputed)	N
991	chr18	53244413	53244414	rs2924322	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	18q21.2	TCF4	rs2924322-A	0.119	6E-8		0.1859	[0.12-0.25] kg increase	Affymetrix [at least 17000000] (imputed)	N
991	chr18	53244413	53244414	rs2924322	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	18q21.2	TCF4	rs2924322-?	NR	5E-8		0.039	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
991	chr18	53251561	53251562	rs17598729	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	TCF4	rs17598729-C	NR	9E-11		1.0893246	[1.06-1.12]	Illumina [6627481] (imputed)	N
991	chr18	53251724	53251725	rs4144686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	18q21.2	NR	rs4144686-A	0.167	1E-8		0.018551348	[0.012-0.025] unit decrease	NR [~ 10000000] (imputed)	N
991	chr18	53251724	53251725	rs4144686	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	18q21.2	NR	rs4144686-A	0.167	9E-9		0.0168007	[0.011-0.023] unit decrease	NR [9732723] (imputed)	N
991	chr18	53252387	53252388	rs599550	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs599550-?	NR	5E-8				NR [NR]	N
991	chr18	53252387	53252388	rs599550	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q21.2		rs599550-?	NR	5E-9				NR [NR]	N
991	chr18	53252387	53252388	rs599550	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	18q21.2	TCF4	rs599550-?	NR	6E-14		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
991	chr18	53252387	53252388	rs599550	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q21.2	TCF4	rs599550-A	0.8602	5E-13		0.2834	[0.21-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
991	chr18	53252387	53252388	rs599550	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q21.2	TCF4	rs599550-A	0.859	7E-10		0.1747	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
991	chr18	53252387	53252388	rs599550	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs599550-?	NR	4E-17		0.02725	[0.021-0.034] unit decrease	Affymetrix [10847151] (imputed)	N
991	chr18	53252387	53252388	rs599550	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	18q21.2	TCF4	rs599550-A	0.147785	7E-11		6.53	z score increase	NR [10847151] (imputed)	N
991	chr18	53252387	53252388	rs599550	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q21.2	TCF4	rs599550-A	0.147785	3E-14		7.6	z score increase	NR [10847151] (imputed)	N
991	chr18	53253409	53253410	rs12954356	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	18q21.2	TCF4	rs12954356-?		9E-10		1.0869565	[1.05-1.11]	Affymetrix, Illumina [NR]	N
991	chr18	53260731	53260732	rs590076	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	18q21.2	TCF4	rs590076-A	0.3505	6E-9		0.0553	[0.037-0.074] unit decrease	NR [9744772] (imputed)	N
991	chr18	53274397	53274398	rs117652372	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	18q21.2		rs117652372-G	0.083	3E-6		1.22	[1.11-1.35]	Illumina [7199488] (imputed)	N
991	chr18	53276588	53276589	rs10871582	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	18q21.2		rs10871582-?	NR	4E-9				NR [9705931] (imputed)	N
991	chr18	53294568	53294569	rs644279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q21.2	Intergenic	rs644279-T	0.5238	2E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
991	chr18	53296926	53296927	rs12457157	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs12457157-?	NR	4E-9		0.01366	[0.0091-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
991	chr18	53301526	53301527	rs6566169	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.2	TCF4	rs6566169-A	0.486471	1E-10		0.0119091	[0.0083-0.0156] unit decrease	NR [13737936] (imputed)	N
991	chr18	53305734	53305735	rs12458015	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	18q21.2	TCF4	rs12458015-?	NR	1E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
991	chr18	53310968	53310969	rs660010	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	18q21.2	TCF4	rs660010-C	0.14	2E-12		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
991	chr18	53311000	53311001	rs76888488	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs76888488-A	0.973749	2E-24		0.278425	[0.22-0.33] increase	Affymetrix [11014269] (imputed)	N
991	chr18	53335511	53335512	rs11659764	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q21.2		rs11659764-A	0.053566	8E-7		0.073002	[0.044-0.102] unit decrease	Affymetrix [15580782] (imputed)	N
991	chr18	53335511	53335512	rs11659764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18q21.2		rs11659764-A	NR	3E-10		0.0287	[0.02-0.038] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
991	chr18	53335511	53335512	rs11659764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	18q21.2	NR	rs11659764-A	NR	2E-10		0.0346	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	18q21.2		rs11659764-T	0.946182	2E-65		0.337318	[0.3-0.38] increase	Affymetrix [11014269] (imputed)	N
991	chr18	53335511	53335512	rs11659764	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	18q21.2	TCF4	rs11659764-T	0.947	4E-92		0.327	[0.29-0.36] unit increase	Affymetrix [12000000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	18q21.2	TCF4	rs11659764-T	0.947	2E-77		0.281	[0.25-0.31] unit increase	Affymetrix [12000000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.2	TCF4	rs11659764-T	0.946891	2E-9		0.0184785	[0.012-0.025] unit increase	Affymetrix [12370749]	N
991	chr18	53335511	53335512	rs11659764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.2	NR	rs11659764-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	18q21.2	TCF4	rs11659764-A	NR	3E-11		0.0297	[0.021-0.039] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
991	chr18	53335511	53335512	rs11659764	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	18q21.2	TCF4	rs11659764-A	0.0527	2E-11		0.0300782	[0.021-0.039] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
991	chr18	53335511	53335512	rs11659764	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	18q21.2	TCF4	rs11659764-A	0.056	4E-9		0.32	[0.21-0.43] mm Hg decrease	Affymetrix [NR] (imputed)	N
991	chr18	53335511	53335512	rs11659764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.2		rs11659764-?	NR	6E-13				NR [~ 8900000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	18q21.2	TCF4, LINC01415	rs11659764-T	0.9465	6E-20		0.276	[0.21-0.34] unit increase	Affymetrix [~ 11900000] (imputed)	N
991	chr18	53335511	53335512	rs11659764	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	18q21.2	TCF4, LINC01415	rs11659764-?	NR	2E-15		0.24	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
992	chr18	53347257	53347258	rs1031831	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	18q21.2	TCF4, MIR4529	rs1031831-C	0.668197	2E-9		0.00462632	[0.0031-0.0061] unit increase	NR [NR] (imputed)	N
992	chr18	53347257	53347258	rs1031831	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	18q21.2	TCF4	rs1031831-C	0.668197	2E-6		0.00481952	[0.0028-0.0068] unit increase	NR [NR] (imputed)	N
992	chr18	53347257	53347258	rs1031831	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	18q21.2	TCF4, MIR4529	rs1031831-C	0.668197	5E-10		0.013511165	[0.0092-0.0178] unit decrease	NR [NR] (imputed)	N
992	chr18	53351483	53351484	rs784219	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q21.2	TCF4	rs784219-A	0.08412	4E-9		0.021422356	[0.014-0.029] unit decrease	Affymetrix [up to 18485882] (imputed)	N
992	chr18	53351539	53351539	rs776081653	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q21.2	TCF4	rs776081653-TCTTTA	0.667716	1E-12		0.0154529	[0.011-0.02] unit increase	NR [16516521] (imputed)	N
992	chr18	53359472	53359473	rs12457071	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12457071-C	0.48419	4E-18		0.0757469	[0.058-0.094] decrease	Affymetrix [11014269] (imputed)	N
992	chr18	53374912	53374913	rs1642294	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q21.2	TCF4	rs1642294-C	0.145	6E-15		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
992	chr18	53374912	53374913	rs1642294	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	18q21.2	NR	rs1642294-C	0.141475	1E-9		6.11	z score decrease	NR [10847151] (imputed)	N
992	chr18	53397198	53397199	rs784257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary potassium excretion	332,398 European ancestry individuals, 5,786 African ancestry individuals, 6,998 South Asian ancestry individuals	NA	18q21.2	NR	rs784257-C	NR	1E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
992	chr18	53397198	53397199	rs784257	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	18q21.2	TCF4	rs784257-T	NR	1E-16		0.0134047	[0.01-0.017] unit increase	Affymetrix [10061374] (imputed)	N
992	chr18	53397198	53397199	rs784257	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	18q21.2	TCF4, LINC01415	rs784257-T	0.187	3E-9	(EA)	0.015	[0.0091-0.0209] unit increase	NR [12082474] (imputed)	N
992	chr18	53397198	53397199	rs784257	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	18q21.2	RARB	rs784257-T	0.187588	3E-11	(EA)	0.0105962	[0.0075-0.0137] unit decrease	Affymetrix [~ 8800000] (imputed)	N
992	chr18	53397198	53397199	rs784257	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	18q21.2	LINC01415	rs784257-T	0.187607	8E-9	(EA)	0.00890228	[0.0059-0.0119] unit decrease	Affymetrix [~ 8800000] (imputed)	N
992	chr18	53397198	53397199	rs784257	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	18q21.2	ENSG00000267284	rs784257-T	NR	1E-8		0.0076432	[0.005-0.0103] unit decrease	Affymetrix [18485882] (imputed)	N
992	chr18	53397198	53397199	rs784257	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	18q21.2	TCF4, LINC01415	rs784257-T	0.187	1E-8		0.01218	[0.008-0.0164] unit increase	Affymetrix [11709857] (imputed)	N
992	chr18	53397198	53397199	rs784257	28358029	Afshari NA	2017-03-30	Nat Commun	Genome-wide association study identifies three novel loci in Fuchs endothelial corneal dystrophy.	Fuchs's corneal dystrophy	1,404 European ancestry cases, 2,564 European ancestry controls	671 European ancestry cases, 778 European ancestry controls	18q21.2	TCF4	rs784257-?	NR	3E-200		4.94	[4.45-5.48]	Illumina [8680745] (imputed)	N
992	chr18	53398625	53398626	rs784256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.2		rs784256-A	NR	4E-11		0.0203	[0.014-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
992	chr18	53398625	53398626	rs784256	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	18q21.2	RP11-397A16.1	rs784256-A	NR	9E-9		0.01154	[0.0076-0.0155] unit decrease	Affymetrix [18485882] (imputed)	N
992	chr18	53398625	53398626	rs784256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.2		rs784256-?	NR	2E-17				NR [~ 8900000] (imputed)	N
992	chr18	53398625	53398626	rs784256	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	18q21.2	NR	rs784256-A	0.184998	2E-13		7.36	z score increase	NR [10847151] (imputed)	N
992	chr18	53398625	53398626	rs784256	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	18q21.2	NR	rs784256-A	0.184998	4E-12		6.95	z score increase	NR [10847151] (imputed)	N
992	chr18	53408186	53408187	rs28758902	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	18q21.2		rs28758902-?	NR	8E-9		0.0174	NR unit increase	NR [4484088] (imputed)	N
992	chr18	53408186	53408187	rs28758902	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.2	NR	rs28758902-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
992	chr18	53408186	53408187	rs28758902	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	LOC10013250	rs28758902-T	NR	1E-10	(EA)	1.073	[1.05-1.09]	Illumina [6627481] (imputed)	N
992	chr18	53408186	53408187	rs28758902	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	18q21.2	NR	rs28758902-T	0.432505	4E-8		5.51	z score increase	NR [~ 10847151] (imputed)	N
992	chr18	53408186	53408187	rs28758902	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	18q21.2	TCF4	rs28758902-T		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
992	chr18	53410911	53410912	rs12458596	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q21.2	NR	rs12458596-G	0.367298859942336	2E-8		0.005354328	[0.0035-0.0072] unit increase	NR [NR]	N
992	chr18	53410911	53410912	rs12458596	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	18q21.2	NR	rs12458596-A	0.638	8E-6	(EA)	0.045	[0.025-0.065] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
992	chr18	53413565	53413566	rs57820851	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs57820851-G	0.651	2E-14		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
992	chr18	53415376	53415377	rs4800995	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	18q21.2	NR	rs4800995-?	NR	7E-13		0.01996	[0.015-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
992	chr18	53426441	53426442	rs12456049	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12456049-A	0.559514	3E-8		0.0482419	[0.03-0.066] decrease	Affymetrix [11014269] (imputed)	N
992	chr18	53429654	53429655	rs4800998	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q21.2	TCF4, TXNL1	rs4800998-A	0.1827	5E-14		1.0384		Affymetrix [11880941] (imputed)	N
992	chr18	53429654	53429655	rs4800998	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q21.2	TCF4, TXNL1	rs4800998-A	0.1827	5E-14		1.0401865		Affymetrix [11880941] (imputed)	N
992	chr18	53437202	53437203	rs784242	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs784242-A	0.6801	2E-12		0.017883705	[0.013-0.023] unit increase	Affymetrix [11515109] (imputed)	N
992	chr18	53437658	53437659	rs72932563	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs72932563-A	0.0372	1E-9		0.038052537	[0.026-0.05] unit decrease	Affymetrix [11515109] (imputed)	N
992	chr18	53437658	53437659	rs72932563	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q21.2	TCF4	rs72932563-A	0.037	3E-10		0.0197	[0.014-0.026] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
992	chr18	53443888	53443889	rs17536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.2		rs17536-?	NR	2E-12				NR [~ 8900000] (imputed)	N
992	chr18	53445929	53445930	rs6566233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q21.2		rs6566233-?	NR	3E-10				NR [~ 8900000] (imputed)	N
992	chr18	53445929	53445930	rs6566233	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q21.2	NA	rs6566233-T	0.5152	7E-11		0.0128	[0.0089-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
992	chr18	53449666	53449667	rs8097498	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	18q21.2	NR	rs8097498-G	0.387	1E-8		1.031	[1.02-1.04]	NR [5276842] (imputed)	N
992	chr18	53450863	53450864	rs72932578	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs72932578-T		8E-11		0.316	[NR] unit decrease	Illumina [NR]	N
992	chr18	53452143	53452144	rs28719468	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.2	TCF4	rs28719468-C	0.1586	2E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
992	chr18	53453112	53453113	rs9952111	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.2		rs9952111-?	NR	3E-11		0.0177668	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
992	chr18	53454102	53454103	rs111366529	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	18q21.2	NR	rs111366529-A	NR	6E-6		3.43	[2.01-5.85]	Illumina [13976150] (imputed)	N
992	chr18	53454773	53454774	rs7235891	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	18q21.2	NR	rs7235891-?	NR	1E-8				Illumina [up to 5582932] (imputed)	N
992	chr18	53454773	53454774	rs7235891	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	18q21.2	NR	rs7235891-C	0.48	7E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix [2446094] (imputed)	N
992	chr18	53454773	53454774	rs7235891	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	18q21.2	NR	rs7235891-C	0.48	5E-8				Affymetrix [2446094] (imputed)	N
992	chr18	53456942	53456943	rs4801000	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	18q21.2	TCF4	rs4801000-G	0.34	3E-9		1.025	[1.017-1.034]	Affymetrix [7736308] (imputed)	N
992	chr18	53456942	53456943	rs4801000	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	18q21.2	NR	rs4801000-A	0.66	1E-7		0.029	[0.019-0.039] unit decrease	Affymetrix [NR] (imputed)	N
992	chr18	53457048	53457049	rs552744792	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs552744792-CT	NR	2E-8		0.468	unit decrease	Illumina [NR]	N
992	chr18	53459904	53459905	rs1382119	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q21.2	NR	rs1382119-T	0.3438	1E-8		0.024802355	[0.016-0.033] unit increase	NR [NR]	N
992	chr18	53471186	53471187	rs67526282	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	18q21.2	NR	rs67526282-C	0.307985	4E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
993	chr18	53480367	53480368	rs1531518	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TCF4	rs1531518-A	0.3348	9E-16		0.020149503	[0.015-0.025] unit decrease	Affymetrix [11515109] (imputed)	N
993	chr18	53480367	53480368	rs1531518	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	18q21.2	TCF4	rs1531518-A	0.334	5E-22		0.0121	[0.0096-0.0146] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
993	chr18	53486723	53486724	rs72627233	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	18q21.2	RP11-397A16.3	rs72627233-?	NR	1E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
993	chr18	53491748	53491749	rs812738	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	18q21.2	TCF4	rs812738-T	0.6663	4E-10		0.012910676	[0.0089-0.0169] unit increase	Illumina [9339358] (imputed)	N
993	chr18	53494968	53494969	rs784330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q21.2		rs784330-?	NR	8E-12				NR [~ 8900000] (imputed)	N
993	chr18	53498113	53498114	rs12605156	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	18q21.2	TCF4	rs12605156-A	0.8084	2E-10		0.1418	[0.098-0.185] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
993	chr18	53533188	53533189	rs72934570	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q21.2	NR	rs72934570-?	NR	3E-12		1.1558021	[1.12-1.2]	Affymetrix, Illumina [12447948] (imputed)	N
993	chr18	53533188	53533189	rs72934570	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	18q21.2	LINC01416, MIR4529, TCF4, TCF4-AS1	rs72934570-?		1E-9		1.1235955	[1.09-1.16]	Affymetrix, Illumina [NR]	N
993	chr18	53533188	53533189	rs72934570	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.2	NR	rs72934570-C	NR	7E-13		1.1627907	[NR]	Illumina [7158791] (imputed)	N
993	chr18	53533188	53533189	rs72934570	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	18q21.2	TCF4	rs72934570-C	0.9203	2E-11		1.1454753	[1.1-1.19]	Affymetrix, Illumina [9005918] (imputed)	N
993	chr18	53538901	53538902	rs17089989	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs17089989-G	0.808132	4E-11		0.0703961	[0.048-0.093] increase	Affymetrix [11014269] (imputed)	N
993	chr18	53550936	53550937	rs72934586	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs72934586-?	NR	2E-9				NR [2625067]	N
993	chr18	53554732	53554733	rs144158419	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	18q21.2		rs144158419-?	NR	1E-8		0.0188	NR unit decrease	NR [4425810] (imputed)	N
993	chr18	53554732	53554733	rs144158419	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	18q21.2	NR	rs144158419-?		9E-11				NR [8377093]	N
993	chr18	53554732	53554733	rs144158419	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	18q21.2	Intergenic	rs144158419-?		7E-9				NR [6786993] (imputed)	N
993	chr18	53566470	53566471	rs2202572	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	18q21.2	LOC101927273	rs2202572-A	0.3289	7E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
993	chr18	53566470	53566471	rs2202572	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	18q21.2	LOC101927273	rs2202572-A	0.3289	6E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix [19819130] (imputed)	N
993	chr18	53574042	53574043	rs9962650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q21.2		rs9962650-?	NR	6E-10				NR [~ 8900000] (imputed)	N
993	chr18	53575948	53575949	rs12959908	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.2		rs12959908-T	0.5776	1E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
993	chr18	53580676	53580677	rs72936314	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	18q21.2	NR	rs72936314-?		2E-11				NR [8377093]	N
994	chr18	53615077	53615078	rs140031044	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Chlamydia trachomatis PorB antibody levels	273 White British ancestry individuals	NA	18q21.2	CTD, 2008L17.1	rs140031044-A	0.989	7E-10		2.05	[1.4-2.7] unit decrease	NR [25472218] (imputed)	N
994	chr18	53625446	53625447	rs142158482	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs142158482-A	NR	8E-8		0.448	unit decrease	Illumina [NR]	N
994	chr18	53637282	53637283	rs2862258	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2862258-G	0.871891	8E-9		0.0797162	[0.053-0.107] increase	Affymetrix [11014269] (imputed)	N
994	chr18	53642395	53642396	rs12956434	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	18q21.2	RPL21P126, TXNL1	rs12956434-A	0.39	9E-7		0.46	[0.28-0.64] unit decrease	Illumina [8257341] (imputed)	N
994	chr18	53645712	53645712	rs201294068	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs201294068-C	0.873898	5E-11		0.0915395	[0.064-0.119] increase	Affymetrix [11014269] (imputed)	N
994	chr18	53661742	53661743	rs72938304	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q21.2	NR	rs72938304-A	0.113	1E-11		0.027205123	[0.019-0.035] unit decrease	NR [~ 10000000] (imputed)	N
994	chr18	53664281	53664282	rs1978503	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	18q21.2	intergenic	rs1978503-?	NR	1E-6				Affymetrix [70897]	N
994	chr18	53665562	53665563	rs141827752	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	18q21.2	NR	rs141827752-G		2E-7		0.82	[NR] unit decrease	Illumina [NR]	N
994	chr18	53694112	53694113	rs1549319	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q21.2	TXNL1	rs1549319-T	0.7524	3E-8		0.015172318	[0.0098-0.0205] unit increase	Affymetrix [11515109] (imputed)	N
994	chr18	53696805	53696806	rs1549320	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q21.2	NR	rs1549320-C	0.739	2E-14		0.00941279	[0.007-0.0118] unit increase	NR [9732723] (imputed)	N
994	chr18	53697966	53697967	rs12957933	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12957933-C	0.798186	4E-16		0.0885865	[0.066-0.111] increase	Affymetrix [11014269] (imputed)	N
994	chr18	53703942	53703943	rs1895617	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q21.2		rs1895617-C	0.267	3E-18		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
994	chr18	53712570	53712571	rs1945735	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	18q21.2	LINC01416, LINC01539	rs1945735-G		1E-8		0.977	[NR]	Affymetrix [up to 79000000] (imputed)	N
994	chr18	53719924	53719925	rs17733784	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q21.2	TXNL1	rs17733784-T	0.6204	2E-10		0.013207491	[0.0092-0.0173] unit increase	Affymetrix [11514654] (imputed)	N
994	chr18	53719924	53719925	rs17733784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	18q21.2		rs17733784-?	NR	5E-10				NR [~ 8900000] (imputed)	N
995	chr18	53744544	53744545	rs1945737	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1945737-T	0.47406	9E-9		0.0513574	[0.033-0.069] increase	Affymetrix [11014269] (imputed)	N
995	chr18	53747211	53747212	rs7235583	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs7235583-A	0.914888	2E-18		0.147642	[0.12-0.18] increase	Affymetrix [11014269] (imputed)	N
995	chr18	53752056	53752057	rs17090055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.2	Intergenic	rs17090055-T	0.7109	6E-13	(MTAG)	0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
995	chr18	53752056	53752057	rs17090055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.2	Intergenic	rs17090055-T	0.7109	1E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
995	chr18	53752056	53752057	rs17090055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.2	Intergenic	rs17090055-T	0.7109	4E-12	(MTAG)	0.0126	[0.0091-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
995	chr18	53752056	53752057	rs17090055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.2	Intergenic	rs17090055-T	0.713	2E-8	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
995	chr18	53763450	53763451	rs1894151	31958309	Hsieh AR	2020-01-01	BMJ Open Diabetes Res Care	Lack of association of genetic variants for diabetic retinopathy in Taiwanese patients with diabetic nephropathy.	Diabetic retinopathy in type 2 diabetes	206 East Asian ancestry cases, 206 East Asian ancestry controls	NA	18q21.2	LINC01539	rs1894151-G	NR	3E-6		3.96	[2.23-7.03]	Affymetrix, Illumina [NR] (imputed)	N
995	chr18	53765770	53765771	rs72940171	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72940171-T	0.92443	3E-9		0.101527	[0.068-0.135] increase	Affymetrix [11014269] (imputed)	N
995	chr18	53768974	53768975	rs1792709	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q21.2	NR	rs1792709-?	NR	3E-11		1.0703658	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
995	chr18	53768974	53768975	rs1792709	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	LOC10050547	rs1792709-G	NR	3E-8	(East Asian)	1.1428571	[1.1-1.19]	Illumina [6627481] (imputed)	N
995	chr18	53768974	53768975	rs1792709	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q21.2	intergenic	rs1792709-A	NR	6E-8	(Chinese)	1.1494253	[1.1-1.2]	Affymetrix, Illumina [up to 5107227] (imputed)	N
995	chr18	53771596	53771597	rs79596395	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01539	rs79596395-?	NR	3E-11		1.34115	[NR] unit decrease	Affymetrix [NR] (imputed)	N
995	chr18	53771596	53771597	rs79596395	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC006305.1	rs79596395-?	NR	2E-12	(male)	1.66783	[NR] unit decrease	Affymetrix [NR] (imputed)	N
995	chr18	53791118	53791119	rs1789567	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	18q21.2	NR	rs1789567-?		4E-9				NR [8377093]	N
995	chr18	53791118	53791119	rs1789567	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	18q21.2	NR	rs1789567-?		4E-9				NR [8377093]	N
995	chr18	53795513	53795514	rs715170	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	LOC10050547	rs715170-C	NR	5E-8	(EA)	1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
995	chr18	53795513	53795514	rs715170	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q21.2	LOC10050547	rs715170-C	NR	1E-11		1.0775862	[1.06-1.1]	Illumina [6627481] (imputed)	N
995	chr18	53795513	53795514	rs715170	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q21.2	LINC01539, TCF4	rs715170-C	NR	5E-12		1.0775862	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
995	chr18	53795513	53795514	rs715170	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q21.2	NR	rs715170-C	NR	1E-8		1.0752687	[NR]	Illumina [7158791] (imputed)	N
995	chr18	53822655	53822656	rs12888138	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12888138-C	0.795737	3E-10		0.0685714	[0.046-0.091] increase	Affymetrix [11014269] (imputed)	N
995	chr18	53826029	53826030	rs12455063	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18q21.2	TXNL1	rs12455063-C	0.362354724500896	9E-6		0.0024753	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
995	chr18	53845163	53845164	rs1792738	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	18q21.2	LINC01539	rs1792738-G	0.091	3E-6				Affymetrix [761050]	N
995	chr18	53846366	53846367	rs1792737	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	18q21.2	intergenic	rs1792737-C	NR	2E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
995	chr18	53855524	53855525	rs12604483	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	18q21.2	AC009271.7	rs12604483-?	0.30	7E-6				Illumina [~ 800000]	N
996	chr18	53870755	53870756	rs1792722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.31	Intergenic	rs1792722-A	0.5235	3E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
996	chr18	53870755	53870756	rs1792722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.31	Intergenic	rs1792722-T	0.4765	9E-10		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
996	chr18	53876819	53876820	rs185245198	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs185245198-A	0.993235	9E-16		0.382682	[0.29-0.48] increase	Affymetrix [11014269] (imputed)	N
997	chr18	54047420	54047421	rs17533219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q21.31		rs17533219-?	NR	5E-9				NR [~ 8900000] (imputed)	N
997	chr18	54062005	54062006	rs568805209	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	18q21.31	NR	rs568805209-A		2E-7		0.949	[NR] unit decrease	Illumina [NR]	N
998	chr18	54191032	54191033	rs17090219	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	18q21.31	Intergenic	rs17090219-?		9E-8		5.15	[3.33-6.97] unit increase	Illumina [5908215] (imputed)	N
998	chr18	54236323	54236324	rs686781	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.31	NR	rs686781-A	0.252492	7E-13		0.0255494	[0.019-0.033] unit decrease	NR [19129689] (imputed)	N
998	chr18	54254575	54254576	rs76585771	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	18q21.31	NR	rs76585771-A	0.0172	8E-7		0.5625	[0.34-0.78] unit increase	Illumina [10677593] (imputed)	N
999	chr18	54268509	54268510	rs625001	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q21.31	NR	rs625001-?		4E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
999	chr18	54333583	54333584	rs12959570	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	18q21.31	TXNL1, WDR7	rs12959570-G	0.23	4E-6		1.2	[NR]	Illumina [7659573] (imputed)	N
1000	chr18	54397621	54397622	rs17750015	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	18q21.31	WDR7	rs17750015-?	NR	8E-6		1.68	[1.34-2.11]	Illumina [876476]	N
1001	chr18	54536934	54536935	rs9957639	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.31	NR	rs9957639-C	0.02091	4E-9	(COPS5)	0.007092	NR unit increase	Illumina [1671387] (imputed)	N
1001	chr18	54546222	54546223	rs72917381	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (septal defects)	1,074 European ancestry cases, 8,486 European ancestry controls	NA	18q21.31	WDR7	rs72917381-?		2E-8	(atrial septal defect type II)	5.93	[3.19-11.13]	Affymetrix, Illumina [9216527] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	18q21.31		rs10048404-T	NR	1E-13		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18q21.31		rs10048404-T	NR	4E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	18q21.31		rs10048404-T	NR	9E-12		0.0138	[0.0099-0.0177] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q21.31	NR	rs10048404-C	0.6597	6E-9		0.0313	[0.021-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.31		rs10048404-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1001	chr18	54578481	54578482	rs10048404	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q21.31	WDR7	rs10048404-T	0.3654	3E-17		0.2277	[0.17-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1001	chr18	54615278	54615279	rs756843594	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q21.31	NR	rs756843594-?	NR	5E-6		0.0075578	[0.0043-0.0108] unit decrease	Affymetrix [805426] (imputed)	N
1001	chr18	54641276	54641277	rs143305267	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		WDR7	rs143305267-?	NR	2E-9	(male)	1.5287	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1001	chr18	54641276	54641277	rs143305267	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		WDR7	rs143305267-?	NR	1E-8		1.21876	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1002	chr18	54668573	54668574	rs1657408	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q21.31	NR	rs1657408-?	NR	4E-8				Illumina [7760689] (imputed)	N
1002	chr18	54675383	54675384	rs17684074	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q21.31	NR	rs17684074-G	0.7389	4E-9		0.0312	[0.021-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1002	chr18	54675383	54675384	rs17684074	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.31	WDR7	rs17684074-G	0.7403	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1002	chr18	54747795	54747796	rs116598544	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	18q21.31		rs116598544-A	0.978479	2E-6		0.0460606	[0.027-0.065] unit decrease	Illumina [13900000] (imputed)	N
1002	chr18	54752313	54752314	rs1557351	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	18q21.31	WDR7	rs1557351-?	0.22	4E-6			[NR]	Illumina [551642]	N
1002	chr18	54764413	54764414	rs12963285	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	18q21.31	LINC-ROR	rs12963285-T	0.834	1E-6		1.3513513	[1.19-1.52]	Illumina [1438399] (imputed)	N
1003	chr18	54837357	54837358	rs118047788	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7748 sp900314535 abundance in stool	5,959 Finnish ancestry individuals	NA	18q21.31		rs118047788-T	0.0130208	3E-8		0.162948	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1003	chr18	54890562	54890563	rs759555	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18q21.31	BOD1L2	rs759555-C	0.755706188496557	1E-7		0.0032893	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1004	chr18	54983553	54983554	rs1120787	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	18q21.31	intergenic	rs1120787-?	NR	7E-6	(progression)			Illumina [NR]	N
1004	chr18	55020792	55020793	rs28674857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.31		rs28674857-G	NR	2E-8		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1004	chr18	55026071	55026072	rs1153628	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	18q21.31	ST8SIA3	rs1153628-C	0.146	6E-6		0.0065	[0.0038-0.0092] unit increase	Affymetrix [~ 7740000] (imputed)	N
1005	chr18	55077590	55077591	rs192155177	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	18q21.31	Intergenic	rs192155177-?		8E-6		101.6	[57.11-146.09] unit increase	Illumina [~ 10000000] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18q21.31		rs4092465-G	NR	2E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18q21.31	ONECUT2	rs4092465-A	0.352829	2E-20		0.00213184	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	18q21.31	NR	rs4092465-G	0.649015	4E-20		0.0118034	[0.0092-0.0144] unit increase	Affymetrix [16585854] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	18q21.31	NR	rs4092465-G	0.649015	6E-13		0.010766	[0.0078-0.0137] unit increase	Affymetrix [16585866] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	18q21.31	NR	rs4092465-G	0.635	2E-9		0.00824661	[0.0055-0.011] unit decrease	NR [~ 9732723] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	18q21.31	NR	rs4092465-G	0.635	4E-8		0.008291878	[0.0053-0.0113] unit decrease	NR [~ 10000000] (imputed)	N
1005	chr18	55080436	55080437	rs4092465	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	18q21.31	ONECUT2	rs4092465-A	0.35	3E-10		0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	18q21.31		rs55855238-C	NR	2E-25		0.0244	[0.02-0.029] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.31	NR	rs55855238-C	0.6495219999999999	5E-29		0.00956539	[0.0078-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	18q21.31	NR	rs55855238-C	0.6485339999999999	3E-14		0.00830085	[0.0059-0.0107] unit increase	Affymetrix [16582621] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.31	NR	rs55855238-C	0.6495219999999999	6E-22		0.00915443	[0.0072-0.0111] unit increase	Affymetrix [16582965] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	18q21.31	NR	rs55855238-C	0.6485339999999999	4E-13		0.00857554	[0.006-0.0111] unit increase	Affymetrix [16582614] (imputed)	N
1005	chr18	55089714	55089715	rs55855238	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.31	NR	rs55855238-T	0.349367	7E-31		0.0243406	[0.02-0.028] unit decrease	NR [NR]	N
1005	chr18	55089714	55089715	rs55855238	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	18q21.31	ST8SIA3	rs55855238-T	0.37	5E-10	(BMI-adjusted)	0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1005	chr18	55097851	55097852	rs75880130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	18q21.31	NR	rs75880130-T	NR	2E-10		0.0285	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1005	chr18	55097851	55097852	rs75880130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	18q21.31	NR	rs75880130-T	NR	7E-10		0.0264	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1005	chr18	55113608	55113609	rs117327520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	18q21.31	NR	rs117327520-T	NR	4E-12		0.0598	[0.043-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1005	chr18	55128674	55128675	rs503581	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	18q21.31	ONECUT2	rs503581-G	0.9	4E-45		14.1	z-score increase	Affymetrix [4314223] (imputed)	N
1005	chr18	55138077	55138078	rs533812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	18q21.31		rs533812-G	NR	4E-40		0.0444	[0.038-0.051] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1005	chr18	55145691	55145692	rs7238309	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	18q21.31	NR	rs7238309-?	NR	3E-6				Illumina [7500450] (imputed)	N
1005	chr18	55175142	55175143	rs10503015	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA		NR	rs10503015-?	NR	6E-7	(FDR adjusted)			Illumina [671038]	N
1005	chr18	55178809	55178810	rs10871745	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	18q21.31	ONECUT2, FECH	rs10871745-?	NR	6E-8		1.045	[1.029-1.062]	Illumina [13763073] (imputed)	N
1006	chr18	55184819	55184820	rs478683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	18q21.31	NR	rs478683-T	NR	2E-15		0.0289	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr18	55186016	55186017	rs510999	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q21.31	NR	rs510999-T	0.104	3E-7	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
1006	chr18	55232789	55232790	rs1790607	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	18q21.31	NR	rs1790607-?	NR	4E-29				Illumina [at least 7383741] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.31		rs2272783-G	NR	2E-14		0.0237	[0.018-0.03] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	18q21.31		rs2272783-G	0.444462	4E-11		0.023992	[0.017-0.031] unit decrease	Illumina [13476266] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.31		rs2272783-G	NR	1E-19		0.0281	[0.022-0.034] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	18q21.31		rs2272783-G	0.44473	2E-14		0.0279962	[0.021-0.035] unit decrease	Illumina [13476299] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.31	FECH	rs2272783-G	0.043585	2E-12		0.03821049	[0.028-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs2272783-A	0.953151	2E-12				Affymetrix, Illumina [22063850] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	18q21.31	NR	rs2272783-A	0.955476	3E-14		0.035094	[0.026-0.044] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs2272783-G	0.116004	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs2272783-G	0.120806	7E-19				Affymetrix, Illumina [20825802] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	18q21.31	NR	rs2272783-A	0.556677	1E-12		0.029449	[0.021-0.038] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q21.31		rs2272783-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.31		rs2272783-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	18q21.31	FECH	rs2272783-?	NR	6E-9		0.02483	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1006	chr18	55238819	55238820	rs2272783	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	18q21.31	FECH	rs2272783-?	NR	7E-12		0.0293	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1006	chr18	55285735	55285736	rs11664891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs11664891-T	NR	6E-11		0.0236	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr18	55285735	55285736	rs11664891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	18q21.31	NR	rs11664891-T	NR	2E-11		0.0241	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1006	chr18	55285735	55285736	rs11664891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.31	NR	rs11664891-T	NR	1E-10		0.0232	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1006	chr18	55296720	55296721	rs78478608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	18q21.31	NR	rs78478608-A	NR	1E-9		0.0461	[0.031-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1006	chr18	55296720	55296721	rs78478608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.31	NR	rs78478608-A	NR	2E-9		0.0456	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	18q21.31		rs11543269-T	NR	7E-12		0.0197	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	18q21.31		rs11543269-T	NR	7E-12		0.0202	[0.015-0.026] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	18q21.31	ATP8B1	rs11543269-C	0.875894	6E-42		0.0102217	[0.0087-0.0118] unit increase	Affymetrix [13995440] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	18q21.31	ATP8B1	rs11543269-C	0.87591	1E-30		0.00680169	[0.0056-0.008] unit increase	Affymetrix [13995440] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.31	ATP8B1	rs11543269-T	0.123875	5E-14		0.025285898	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	18q21.31	ATP8B1	rs11543269-T	0.123867	1E-12		0.023973443	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr18	55313996	55313997	rs11543269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	18q21.31	ATP8B1	rs11543269-T	0.12389	2E-13		0.024688818	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr18	55317895	55317896	rs8097764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q21.31		rs8097764-A	NR	4E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1007	chr18	55317895	55317896	rs8097764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	18q21.31	NR	rs8097764-A	0.122086	5E-15		0.022065	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1007	chr18	55319031	55319032	rs369298568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	18q21.31		rs369298568-C	NR	2E-8		0.0827	[0.054-0.111] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1007	chr18	55319031	55319032	rs369298568	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	18q21.31	NR	rs369298568-T	0.876157	5E-12		0.020139	[0.014-0.026] unit decrease	Affymetrix [15000001]	N
1007	chr18	55322010	55322011	rs12963741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs12963741-T	0.11805	6E-14				Affymetrix, Illumina [24653286] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	18q21.31	ATP8B1	rs12968116-?	NR	5E-11		0.0024	[0.0016-0.0032] unit decrease	Affymetrix [21347608] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	18q21.31	ATP8B1	rs12968116-?	NR	6E-28		0.0065	[0.0051-0.0079] unit decrease	Affymetrix [21347608] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.31	NR	rs12968116-T	0.122286	1E-15		0.022548	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs12968116-T	0.117916	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	18q21.31	NR	rs12968116-T	0.12201	9E-16		0.022685	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	18q21.31	ATP8B1	rs12968116-T		4E-14		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	18q21.31	ATP8B1	rs12968116-?		1E-8		1.0869565	[1.05-1.11]	Affymetrix, Illumina [43000000] (imputed)	N
1007	chr18	55322501	55322502	rs12968116	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	18q21.31	ATP8B1	rs12968116-C	0.87	9E-10		4.8	[2.80-6.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1007	chr18	55323908	55323909	rs7227893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs7227893-A	0.150796	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
1007	chr18	55325544	55325545	rs56950313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.31		rs56950313-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1007	chr18	55331984	55331985	rs12969748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs12969748-T	NR	3E-25		0.0367	[0.03-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr18	55331984	55331985	rs12969748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	18q21.31	NR	rs12969748-T	NR	1E-17		0.0304	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1007	chr18	55331984	55331985	rs12969748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.31	NR	rs12969748-T	NR	8E-19		0.0314	[0.025-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1007	chr18	55434201	55434202	rs7236632	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	18q21.31	ATP8B1	rs7236632-A	0.86	6E-6				Perlegen [378332]	N
1008	chr18	55443711	55443712	rs7239484	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.31	NR	rs7239484-?	NR	2E-8				Affymetrix [NR]	N
1008	chr18	55449515	55449516	rs2663842	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	18q21.31	ATP8B1	rs2663842-A	0.678001	9E-9		0.016122	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1008	chr18	55454376	55454377	rs10503019	19890347	Birlea SA	2009-11-05	J Invest Dermatol	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	18q21.31	ATP8B1	rs10503019-?	0.28	3E-6				Illumina [297342]	N
1008	chr18	55462989	55462990	rs2437037	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	18q21.31	ATP8B1	rs2437037-A	0.909	4E-6	(Male)	0.449	[0.32-0.58]	NR [up to 1668434] (imputed)	N
1008	chr18	55473650	55473651	rs2571244	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	18q21.31	NR	rs2571244-?	0.08083	3E-6		0.062398	[0.036-0.088] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1008	chr18	55473650	55473651	rs2571244	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	18q21.31	NR	rs2571244-?	0.08083	2E-8		0.108502	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1008	chr18	55485513	55485514	rs2663839	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	18q21.31	NR	rs2663839-T	0.2345	9E-6		1.769	[1.372-2.281]	Illumina [274400]	N
1008	chr18	55491964	55491965	rs2187324	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	18q21.31	ATP8B1	rs2187324-T	NR	4E-6		4.614	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1008	chr18	55496304	55496305	rs62094879	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	18q21.31	intergenic	rs62094879-T		6E-6		0.2917	unit decrease	Illumina [5767231] (imputed)	N
1009	chr18	55576977	55576978	rs10515975	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	18q21.31		rs10515975-A	NR	8E-7		0.35	[0.23-0.53]	Illumina [7105229] (imputed)	N
1009	chr18	55627839	55627840	rs11875185	22808956	Lyons PA	2012-07-19	N Engl J Med	Genetically distinct subsets within ANCA-associated vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	914 European ancestry cases, 5,259 European ancestry controls	1,454 European ancestry cases, 1,666 European ancestry controls	18q21.31	intergenic	rs11875185-?	NR	7E-6				Affymetrix [NR]	N
1009	chr18	55637711	55637712	rs12457254	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	18q21.31	intergenic	rs12457254-?		5E-6				NR [~ 3000000] (imputed)	N
1009	chr18	55650162	55650163	rs77112978	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	18q21.31		rs77112978-G	0.048	3E-8		1.47	[1.28-1.68]	Illumina [9962324] (imputed)	N
1010	chr18	55710177	55710178	rs11152056	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	18q21.31	NR	rs11152056-C	0.03	4E-6	(Asian)	0.65	[0.37-0.93] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1010	chr18	55722995	55722996	rs4349234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SMURF1	5,367 Icelandic ancestry individuals	NA	18q21.31		rs4349234-T	0.2403	3E-14		0.167994	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1010	chr18	55732114	55732115	rs7235890	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	18q21.31	NEDD4L	rs7235890-G	0.10440000000000005	4E-9		0.1692	[0.11-0.23] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1010	chr18	55783496	55783497	rs529445	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	18q21.31	NEDD4L	rs529445-?		3E-6				Illumina [859311]	N
1010	chr18	55810732	55810733	rs549476	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	18q21.31	NEDD4L	rs549476-?	NR	3E-6	(SF5)			Affymetrix [5476100] (imputed)	N
1011	chr18	55872557	55872558	rs292441	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	18q21.31	Intergenic	rs292441-G	0.324	3E-6		1.0672358	[NR]	Illumina [9112387] (imputed)	N
1011	chr18	55881917	55881918	rs487990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.31		rs487990-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1011	chr18	55897719	55897720	rs292445	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.31	ALPK2	rs292445-?	NR	9E-6	(glycerol-3-phosphate)	0.18596984	[0.1-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1011	chr18	55910522	55910523	rs158856	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	18q21.31	NEDD4L	rs158856-?	0.66	7E-6		1.41	[1.20-1.61]	Illumina [2380486] (imputed)	N
1011	chr18	55916880	55916881	rs6566953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs6566953-A	NR	5E-12		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1011	chr18	55943925	55943926	rs184566112	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	18q21.31	NEDD4L	rs184566112-A	0.84	4E-6		0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1012	chr18	55968714	55968715	rs62096389	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	18q21.31		rs62096389-?	NR	2E-8		0.00928036	[0.0061-0.0125] unit increase	NR [NR]	N
1012	chr18	55968714	55968715	rs62096389	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs62096389-A	NR	5E-21		0.0408	[0.032-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr18	56005644	56005645	rs9953918	34319380	Gaitanidis A	2021-07-28	JAMA Surg	Association Between NEDD4L Variation and the Genetic Risk of Acute Appendicitis: A Multi-institutional Genome-Wide Association Study.	Acute appendicitis	1,743 European or unknown ancestry cases, 27,963 European or unknown ancestry controls	NA	18q21.31	NR	rs9953918-?	NR	4E-8		0.99	0.98-1.00	Illumina [5676600] (imputed)	N
1012	chr18	56009603	56009604	rs12454023	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	18q21.31	intergenic	rs12454023-?	0.5	8E-7		1.12	[1.08-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1012	chr18	56017522	56017523	rs17808190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q21.31	Intergenic	rs17808190-T	0.3008	2E-22	(MTAG)	0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1012	chr18	56017522	56017523	rs17808190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q21.31	Intergenic	rs17808190-G	0.6992	4E-21		0.02	[0.016-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1012	chr18	56019494	56019495	rs9675944	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	18q21.31	Intergenic	rs9675944-G	0.7016	3E-13		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1012	chr18	56020508	56020509	rs9963330	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q21.31	NEDD4L, LOC100132992, ALPK2	rs9963330-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
1012	chr18	56025249	56025250	rs4940386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q21.31	Intergenic	rs4940386-A	0.2974	1E-18	(MTAG)	0.0159	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1012	chr18	56032230	56032231	rs4940668	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q21.31	Intergenic	rs4940668-A	0.701	2E-8	(MTAG)	0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1012	chr18	56084053	56084054	rs4503880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	18q21.31		rs4503880-C	NR	3E-51		0.042	[0.037-0.047] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1012	chr18	56084053	56084054	rs4503880	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	18q21.31	NEDD4L	rs4503880-T	0.201548	4E-251		0.0214762	[0.02-0.023] unit increase	Affymetrix [13995440] (imputed)	N
1012	chr18	56084053	56084054	rs4503880	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	18q21.31	NEDD4L	rs4503880-T	0.201561	4E-63		0.00802734	[0.0071-0.009] unit increase	Affymetrix [13995440] (imputed)	N
1012	chr18	56084053	56084054	rs4503880	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	18q21.31	NEDD4L	rs4503880-T	0.21	3E-12		3.6	[2.50-4.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1012	chr18	56085916	56085917	rs4309483	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	18q21.31	NEDD4L, ALPK2	rs4309483-A	0.24	5E-20		9.17	z-score increase	Affymetrix [4311822] (imputed)	N
1012	chr18	56086819	56086820	rs9959832	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	18q21.31	NEDD4L, ALPK2	rs9959832-C	0.2	2E-38		13.0	z-score increase	Affymetrix [4312306] (imputed)	N
1012	chr18	56086819	56086820	rs9959832	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	18q21.31	NEDD4L, MIR122	rs9959832-?	NR	8E-32		0.06257	[0.052-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
1012	chr18	56087416	56087417	rs11152071	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18q21.31	NEDD4L	rs11152071-T	0.242923	6E-35		0.00322162	[0.0027-0.0038] unit increase	Affymetrix [13995440] (imputed)	N
1012	chr18	56087647	56087648	rs12373325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18q21.31		rs12373325-C	NR	1E-25		0.0263	[0.021-0.031] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1012	chr18	56087647	56087648	rs12373325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	18q21.31		rs12373325-C	0.820605	7E-37		0.0573472	[0.048-0.066] unit decrease	Illumina [13476165] (imputed)	N
1012	chr18	56089115	56089116	rs4940689	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	18q21.31	NEDD4L, MIR122	rs4940689-?		3E-31		0.06	[0.05-0.07] unit decrease	Illumina [31500000] (imputed)	N
1012	chr18	56089857	56089858	rs143393480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.31		rs143393480-T	NR	3E-8		0.0437	[0.028-0.059] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1012	chr18	56089857	56089858	rs143393480	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	18q21.31	ALPK2	rs143393480-?	NR	2E-8		0.0708	[0.049-0.093] unit increase	Affymetrix [5701386] (imputed)	N
1012	chr18	56093447	56093448	rs9953884	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	18q21.31	NEDD4L, MIR122	rs9953884-?		4E-8		0.0273	[0.018-0.037] unit decrease	Illumina [31500000] (imputed)	N
1012	chr18	56094782	56094783	rs10871755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18q21.31		rs10871755-G	NR	5E-179		0.0665	[0.062-0.071] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	18q21.31	NEDD4L	rs4940691-?	NR	7E-30		0.0041	[0.0033-0.0049] unit increase	Affymetrix [21347608] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	18q21.31	NEDD4L	rs4940691-?	NR	3E-46		0.008	[0.007-0.009] unit increase	Affymetrix [21347608] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	3E-22		0.0287	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	4E-9		0.0175	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	1E-144		0.0756	[0.07-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	1E-26		0.0316	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	6E-38		0.0381	[0.032-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1012	chr18	56095377	56095378	rs4940691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.31	NR	rs4940691-G	NR	1E-52		0.0451	[0.039-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr18	56099854	56099855	rs77707292	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	18q21.31	MIR122	rs77707292-T	0.914796	3E-61		0.0151779	[0.013-0.017] unit increase	Affymetrix [13995440] (imputed)	N
1013	chr18	56099854	56099855	rs77707292	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18q21.31	MIR122	rs77707292-T	0.914795	3E-16		0.00351021	[0.0027-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
1013	chr18	56099854	56099855	rs77707292	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	18q21.31	MIR122	rs77707292-T	0.91479	2E-17		0.0059679	[0.0046-0.0074] unit increase	Affymetrix [13995440] (imputed)	N
1013	chr18	56106158	56106159	rs4940694	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	18q21.31		rs4940694-?	NR	7E-11		0.00596617	[0.0042-0.0078] unit increase	NR [NR]	N
1013	chr18	56109858	56109859	rs8099014	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	18q21.31	MIR122	rs8099014-A	NR	4E-8		0.011683123	[0.0075-0.0159] unit increase	Illumina [242289]	N
1013	chr18	56109858	56109859	rs8099014	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Platelet count	115 African ancestry HIV-negative individuals	NA	18q21.31	AC105105.1	rs8099014-?	NR	6E-6				Illumina [874956]	N
1013	chr18	56118357	56118358	rs41292412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.31		rs41292412-T	NR	2E-11		0.0708	[0.05-0.092] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	18q21.31		rs41292412-T	NR	5E-10		0.0648	[0.044-0.085] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.31	MIR122	rs41292412-T	0.0120940000000001	2E-13		0.07726152	[0.057-0.098] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q21.31	MIR122	rs41292412-T	0.012093	5E-12		0.0728078	[0.052-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs41292412-T	0.0111595	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.31	NR	rs41292412-T	0.011563	4E-14		0.066791	[0.05-0.084] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q21.31	ALPK2	rs41292412-C	0.987919	1E-11		0.0628684	[0.045-0.081] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.31	ALPK2	rs41292412-C	0.987884	9E-14		0.0662649	[0.049-0.084] unit increase	Affymetrix [NR] (imputed)	N
1013	chr18	56118357	56118358	rs41292412	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.31	ALPK2	rs41292412-C	0.987877	5E-10		0.0569416	[0.039-0.075] unit increase	Affymetrix [NR] (imputed)	N
1013	chr18	56120653	56120654	rs10514883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs10514883-T	NR	1E-34		0.0363	[0.03-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr18	56120653	56120654	rs10514883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	18q21.31	NR	rs10514883-T	NR	2E-12		0.0208	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr18	56120653	56120654	rs10514883	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.31	NR	rs10514883-T	NR	8E-15		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr18	56130292	56130293	rs7243073	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	18q21.31	NEDD4L, ALPK2	rs7243073-A	0.26	9E-15		7.75	z-score increase	Affymetrix [4314223] (imputed)	N
1013	chr18	56147554	56147555	rs7504657	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	18q21.31		rs7504657-?	NR	2E-8		0.00516112	[0.0034-0.007] unit decrease	NR [NR]	N
1013	chr18	56147830	56147831	rs59742698	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18q21.31	ALPK2	rs59742698-G	0.834969	2E-17		0.0026639	[0.002-0.0033] unit decrease	Affymetrix [13995440] (imputed)	N
1013	chr18	56189458	56189459	rs76726049	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	18q21.31	ALPK2	rs76726049-C	NR	2E-7		5.216	NR z-score increase	Affymetrix [10847151] (imputed)	N
1013	chr18	56189458	56189459	rs76726049	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	18q21.31	ALPK2	rs76726049-C	0.014	3E-8		5.52	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1013	chr18	56199768	56199769	rs577835029	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	18q21.31	ALPK2	rs577835029-A	0.0016	9E-6		0.815	[0.46-1.17] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr18	56204746	56204747	rs3826593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.31	NR	rs3826593-A	NR	8E-11		0.0309	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1013	chr18	56211544	56211545	rs62096277	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q21.31		rs62096277-C	NR	4E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1013	chr18	56211839	56211840	rs12454835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.31	ALPK2	rs12454835-T	0.184802	2E-11		0.01936884	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr18	56211839	56211840	rs12454835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.31	ALPK2	rs12454835-T	0.184786	8E-10		0.017666714	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr18	56211839	56211840	rs12454835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.31	NR	rs12454835-T	0.197438	5E-14				Affymetrix, Illumina [19872809] (imputed)	N
1013	chr18	56211839	56211840	rs12454835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q21.31	NR	rs12454835-T	0.185328	5E-16		0.02074	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1013	chr18	56213389	56213390	rs12456021	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.31	ALPK2	rs12456021-A	NR	2E-7		1.0688329	NR	Affymetrix, Illumina [8278136] (imputed)	N
1013	chr18	56213389	56213390	rs12456021	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and systolic blood pressure (pleiotropy)	230,204 individuals	NA	18q21.31	ALPK2	rs12456021-?	NR	8E-6			[0.8663-0.9455]	NR [2382073]	N
1013	chr18	56213389	56213390	rs12456021	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	18q21.31	ALPK2	rs12456021-A	NR	4E-6		1.1	[1.08-1.12]	Illumina [465434]	N
1014	chr18	56245041	56245042	rs8086790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q21.31	NR	rs8086790-?	NR	1E-7				Affymetrix [NR]	N
1014	chr18	56269736	56269737	rs4940730	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.32	ALPK2	rs4940730-A	NR	4E-10		1.0626	NR	Affymetrix, Illumina [8278136] (imputed)	N
1014	chr18	56288008	56288009	rs12960082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.32	ALPK2	rs12960082-T	0.090641	9E-12		0.02662428	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr18	56288008	56288009	rs12960082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.32	ALPK2	rs12960082-T	0.090651	1E-10		0.025248336	[0.018-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1014	chr18	56288008	56288009	rs12960082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.32		rs12960082-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1014	chr18	56348043	56348044	rs9955954	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.32	MALT1	rs9955954-A	NR	5E-11		1.0893246	NR	Affymetrix, Illumina [8278136] (imputed)	N
1015	chr18	56384191	56384192	rs7238078	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	18q21.32	MALT1	rs7238078-A	NR	3E-9		1.12	[1.1-1.14]	Illumina [465434]	N
1015	chr18	56395587	56395588	rs35911461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.32		rs35911461-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1015	chr18	56400293	56400294	rs28478925	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	18q21.32		rs28478925-A	NR	1E-5		0.4221	unit increase	Illumina [NR] (imputed)	N
1016	chr18	56503555	56503556	rs11877326	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18q21.32	NR	rs11877326-?	NR	3E-7		0.07998065	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1016	chr18	56511907	56511908	rs8088420	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	18q21.32	ZNF532, RNU6-219P, RN7SL112P	rs8088420-C	0.25	7E-7		2.48	[1.73-3.55]	Affymetrix, Illumina [at least 603042] (imputed)	N
1016	chr18	56549641	56549642	rs12455866	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.32	MALT1	rs12455866-?	NR	2E-6	(PC 36:1)	0.20716149	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1016	chr18	56602701	56602702	rs73439953	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	18q21.32	ZNF532	rs73439953-?	NR	8E-7		0.61	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1016	chr18	56604882	56604883	rs78044268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.32	NR	rs78044268-A	0.01045	2E-8	(PRPS1)	0.03586	NR unit increase	Illumina [1671387] (imputed)	N
1016	chr18	56604882	56604883	rs78044268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.32	NR	rs78044268-A	0.01045	1E-9	(ALDH16A1)	0.03419	NR unit increase	Illumina [1671387] (imputed)	N
1017	chr18	56644452	56644453	rs4940436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.32		rs4940436-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1017	chr18	56745998	56745999	rs35283980	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	18q21.32	NR	rs35283980-G	NR	1E-8		1.041	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1017	chr18	56746314	56746315	rs12956892	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q21.32	OACYLP	rs12956892-T	0.3	8E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1017	chr18	56752053	56752054	rs1037757	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	18q21.32	LOC390958, Sec11C	rs1037757-?	NR	8E-6		4.5618	unit decrease	Illumina [2543888] (imputed)	N
1018	chr18	56767670	56767671	rs9961653	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	18q21.32	RAX, CPLX4, LMAN1	rs9961653-T	0.42	1E-6		1.04	[1.02-1.06]	NR [16760980] (imputed)	N
1018	chr18	56767670	56767671	rs9961653	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	18q21.32	RAX, CPLX4, LMAN1	rs9961653-T	0.42	7E-10		0.023	[0.015-0.031] unit increase	NR [16760980] (imputed)	N
1018	chr18	56823998	56823999	rs8094095	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.32		rs8094095-A	0.1496	6E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1018	chr18	56824040	56824041	rs9964420	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.32		rs9964420-A	0.301	4E-21		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1018	chr18	56824040	56824041	rs9964420	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	18q21.32	NR	rs9964420-A	0.301	5E-8		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1018	chr18	56824040	56824041	rs9964420	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q21.32	SEC11C	rs9964420-C	0.7017	2E-37		1.049979		Affymetrix [11880941] (imputed)	N
1018	chr18	56824040	56824041	rs9964420	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q21.32	SEC11C	rs9964420-C	0.7017	2E-37		1.0500103		Affymetrix [11880941] (imputed)	N
1018	chr18	56824040	56824041	rs9964420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q21.32		rs9964420-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1018	chr18	56832774	56832775	rs10503023	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	18q21.32	SEC11L3	rs10503023-A		1E-6		0.03109	[NR] unit decrease	Illumina [635970]	N
1018	chr18	56862781	56862782	rs138683663	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	18q21.32	NR	rs138683663-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	4.9	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1018	chr18	56876227	56876228	rs9957145	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.32	GRP	rs9957145-G	0.829	8E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1018	chr18	56876385	56876386	rs922048	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	18q21.32	GRP	rs922048-?	NR	3E-9		0.0453	NR L increase	Affymetrix [9390170] (imputed)	N
1018	chr18	56878179	56878180	rs55932597	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.32	NR	rs55932597-T	0.167161	1E-10		0.0602677	[0.042-0.078] unit decrease	Affymetrix [17914406] (imputed)	N
1018	chr18	56878273	56878274	rs1517037	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q21.32	NR	rs1517037-C	0.8132	3E-10		0.0375	[0.026-0.049] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1018	chr18	56878273	56878274	rs1517037	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.32	GRP	rs1517037-C	0.811867	2E-8		0.00992268	[0.0065-0.0134] unit increase	Affymetrix [12370749]	N
1018	chr18	56878273	56878274	rs1517037	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	18q21.32	GRP	rs1517037-C	0.8200000000000001	3E-8		1.16	[1.10-1.25]	Illumina [11381182] (imputed)	N
1018	chr18	56878273	56878274	rs1517037	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q21.32	NR	rs1517037-?	NR	8E-7	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1018	chr18	56878273	56878274	rs1517037	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	18q21.32	GRP	rs1517037-C	0.818	3E-7		1.1494253	[1.09-1.2]	Illumina [866891] (imputed)	N
1018	chr18	56878361	56878362	rs1517036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs1517036-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
1018	chr18	56878361	56878362	rs1517036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.32		rs1517036-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1018	chr18	56879826	56879827	rs9319943	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q21.32	NR	rs9319943-C	0.2071	2E-10		0.0308	[0.021-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1018	chr18	56880210	56880211	rs57791062	30541042	Walsh N	2018-12-12	J Natl Cancer Inst	Agnostic Pathway/Gene Set Analysis of Genome-Wide Association Data Identifies Associations for Pancreatic Cancer.	Pancreatic ductal adenocarcinoma	9,040 European ancestry cases, 12,496 European ancestry controls	NA	18q21.32	GRP	rs57791062-C	NR	2E-6		1.1363636	[1.08-1.2]	NR [NR]	N
1018	chr18	56881632	56881633	rs9957264	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	18q21.32	GRP	rs9957264-A	0.16477	3E-9		0.092831515	[0.062-0.124] unit decrease	Affymetrix [7288503] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.32	NA	rs7243357-T	0.8349	1E-20		0.0198	[0.016-0.024] unit increase	NR [~ 27400000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q21.32	NA	rs7243357-T	0.8349	1E-20		0.0198	[0.016-0.024] unit increase	NR [~ 27400000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q21.32	NR	rs7243357-T	NR	9E-6		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	GRP	rs7243357-T	0.8196	6E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	GRP	rs7243357-T	0.8196	3E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q21.32	GRP	rs7243357-T	0.8196	6E-8		0.026	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	GRP	rs7243357-T	0.8196	4E-8		0.0232	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	GRP	rs7243357-T	0.8196	1E-6	(men)	0.0297	[0.018-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q21.32	NR	rs7243357-T	0.815405245375581	5E-11		0.02309739	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1018	chr18	56883318	56883319	rs7243357	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	GRP	rs7243357-T	0.813	9E-9		0.022	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1018	chr18	56883318	56883319	rs7243357	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	GRP	rs7243357-T	0.812	4E-8	(EA)	0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1018	chr18	56883318	56883319	rs7243357	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	GRP	rs7243357-T	0.81	1E-6	(EA, men)	0.025	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1019	chr18	56892913	56892914	rs55796466	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	18q21.32	GRP	rs55796466-?	0.0021	9E-6				Illumina [308166]	N
1019	chr18	56915927	56915928	rs80341932	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	18q21.32	NR	rs80341932-G	NR	7E-7		0.1016	[0.061-0.142] SD units decrease	NR [10700000] (imputed)	N
1019	chr18	56933044	56933045	rs510438	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	18q21.32	RAX, GRP	rs510438-?	NR	5E-7	(EA)	0.0107	[0.011-0.011] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1019	chr18	56943096	56943097	rs8087238	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	18q21.32	RAX, CPLX4	rs8087238-?	NR	7E-24		0.756	[0.61-0.91] unit decrease	Affymetrix [11100000] (imputed)	N
1019	chr18	57000468	57000469	rs2298711	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	18q21.32	CPLX4, LMAN1	rs2298711-A		1E-11		0.083	[NR] unit increase	Illumina [24111857] (imputed)	N
1020	chr18	57021205	57021206	rs12604424	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	18q21.32		rs12604424-C	0.1303	1E-11		0.06	[0.04-0.08] unit increase	Illumina [26711992] (imputed)	N
1020	chr18	57043036	57043037	rs9319949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.32		rs9319949-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1020	chr18	57048570	57048571	rs190102446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.32		rs190102446-T	0.0364	2E-8		0.021	[0.014-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1020	chr18	57054934	57054935	rs75679154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	18q21.32	NR	rs75679154-G	NR	3E-12		0.0461	[0.033-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr18	57086933	57086934	rs9948057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.32		rs9948057-A	0.366195	3E-10		0.014482785	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr18	57086933	57086934	rs9948057	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.32	NR	rs9948057-A	0.34249	7E-11				Affymetrix, Illumina [19872809] (imputed)	N
1020	chr18	57086933	57086934	rs9948057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.32		rs9948057-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1020	chr18	57113148	57113149	rs35588582	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCBE1	rs35588582-?	NR	3E-8	(male)	1.04642	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr18	57113148	57113149	rs35588582	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCBE1	rs35588582-?	NR	3E-10		1.04047	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr18	57138956	57138957	rs12961264	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	18q21.32	CCBE1	rs12961264-C	0.23	1E-11		0.51	[0.35-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1020	chr18	57138956	57138957	rs12961264	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	18q21.32	CCBE1	rs12961264-C	0.2269	7E-12		0.5413	[0.39-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1021	chr18	57152037	57152038	rs12955474	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	18q21.32	CCBE1	rs12955474-?		4E-7	(PC3)	0.099	[NR] unit decrease	Illumina [4167292] (imputed)	N
1021	chr18	57168497	57168498	rs689049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	18q21.32		rs689049-C	NR	1E-12		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1021	chr18	57168497	57168498	rs689049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	18q21.32		rs689049-C	NR	7E-14		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1021	chr18	57168497	57168498	rs689049	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	18q21.32	NR	rs689049-C	0.5811	7E-9		0.001359	[0.00091-0.00181] unit increase	Affymetrix [NR] (imputed)	N
1021	chr18	57168497	57168498	rs689049	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q21.32	CCBE1	rs689049-T	0.403337	4E-8	(-116 ms)	0.0302659	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1021	chr18	57168497	57168498	rs689049	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	18q21.32	CCBE1	rs689049-T	0.403337	2E-8	(-114 ms)	0.0310361	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1021	chr18	57176232	57176233	rs111870840	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	18q21.32	NR	rs111870840-G	0.021	2E-7	(Unifrac metric)	5.028066	NR z-score increase	Illumina [5293637] (imputed)	N
1021	chr18	57181587	57181588	rs7241148	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	18q21.32		rs7241148-G	0.743998	2E-8		0.026355	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1021	chr18	57182907	57182908	rs17065909	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q21.32	CCBE1	rs17065909-T	0.176	1E-15		0.0199	[0.015-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
1021	chr18	57186585	57186586	rs949214	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	18q21.32	CCBE1	rs949214-C	0.303	6E-16		0.21	[0.16-0.26] unit decrease	Affymetrix [339439]	N
1021	chr18	57190300	57190301	rs12955138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.32	NR	rs12955138-C	NR	8E-14		0.0272	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1021	chr18	57212025	57212026	rs1944982	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	18q21.32	CCBE1	rs1944982-A	0.2279	7E-6	(female)	0.0789	[0.044-0.113] unit decrease	NR [NR] (imputed)	N
1021	chr18	57218190	57218191	rs9959566	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CCBE1	rs9959566-?	NR	9E-10	(female)	1.63424	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1021	chr18	57219403	57219404	rs2000887	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol add-on therapy)	198 European American hypertensive individuals, 127 African American hypertensive individuals	NA	18q21.32	NR	rs2000887-A	0.08	3E-6	(AA)	7.01	[4.21-9.81] bpm increase	Illumina [at least 1100000] (imputed)	N
1021	chr18	57231787	57231788	rs28521571	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q21.32	NR	rs28521571-?	NR	4E-8	(left entorhinal)			NR [9227495] (imputed)	N
1021	chr18	57238785	57238785	rs35149360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.32	CCBE1	rs35149360-CA	0.364799	6E-9		0.0151426	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1022	chr18	57292530	57292531	rs2005277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q21.32	NR	rs2005277-C	0.445157	2E-14		0.015339	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1022	chr18	57302653	57302653	rs10679194	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q21.32	CCBE1	rs10679194-CTGAAA	0.369924	1E-9		0.014860992	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57309058	57309059	rs1864309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.32	NR	rs1864309-G	0.484542	2E-12				Affymetrix, Illumina [20825802] (imputed)	N
1022	chr18	57309951	57309952	rs2043040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q21.32	NR	rs2043040-C	0.440511	8E-11		0.012607	[0.0088-0.0164] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1022	chr18	57310607	57310608	rs2043037	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.32	PMAIP1	rs2043037-?	NR	9E-6	(TAG 48:0)	0.15778263	[0.088-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
1022	chr18	57314806	57314807	rs11152166	23857890	Power RA	2013-07-15	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis accounting for environmental factors through propensity-score matching: application to stressful live events in major depressive disorder.	Major depressive disorder	805 European ancestry cases, 805 European ancestry controls	NA	18q21.32	CCBE1	rs11152166-?	0.58	3E-6		1.41	[1.22-1.61]	Illumina [457670]	N
1022	chr18	57328395	57328396	rs72966926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.32		rs72966926-A	NR	3E-12		0.0245	[0.018-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.32		rs72966926-A	NR	2E-13		0.0258	[0.019-0.033] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.13031	1E-14		0.025672002	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.130315	3E-12		0.023251973	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.130309	5E-10		0.0235535	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.130309	6E-14		0.024662262	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.130313	4E-9		0.01957877	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.13031	3E-17		0.027975231	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.32	CCBE1	rs72966926-A	0.130299	4E-15		0.026073849	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.32	NR	rs72966926-A	0.126019	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q21.32	NR	rs72966926-A	0.129711	7E-18		0.023459	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.32		rs72966926-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1022	chr18	57328395	57328396	rs72966926	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.32		rs72966926-?	NR	4E-11		0.0198601	[0.014-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
1022	chr18	57345189	57345190	rs72969820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.32		rs72969820-T	NR	4E-14		0.0279	[0.021-0.035] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1022	chr18	57345189	57345190	rs72969820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.32	CCBE1	rs72969820-T	0.114836	2E-11		0.024276135	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57345189	57345190	rs72969820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q21.32	CCBE1	rs72969820-T	0.114857	2E-15		0.028842488	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1022	chr18	57345189	57345190	rs72969820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.32	NR	rs72969820-T	0.111059	6E-21				Affymetrix, Illumina [24588908] (imputed)	N
1022	chr18	57345189	57345190	rs72969820	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.32	NR	rs72969820-T	0.115012	1E-22		0.029062	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1023	chr18	57421089	57421090	rs1788904	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	18q21.32	CCBE1, PMAIP1	rs1788904-A	0.6126	3E-6		0.2499	[0.15-0.35] unit decrease	NR [NR] (imputed)	N
1023	chr18	57456345	57456346	rs57018922	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	18q21.32		rs57018922-?	NR	9E-6		0.201	unit decrease	Illumina [NR] (imputed)	N
1023	chr18	57462102	57462103	rs9957425	30453627	Marklund M	2018-11-17	Nutrients	Genome-Wide Association Studies of Estimated Fatty Acid Desaturase Activity in Serum and Adipose Tissue in Elderly Individuals: Associations with Insulin Sensitivity.	Fatty acid desaturase activity (serum)	1,453 European ancestry individuals	NA	18q21.32	MC4R	rs9957425-T	0.61	4E-8	(D6D)			Illumina [at least 738879] (imputed)	N
1023	chr18	57479468	57479469	rs75282864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q21.32		rs75282864-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1023	chr18	57481636	57481637	rs9964626	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	18q21.32	NR	rs9964626-?	NR	8E-7		4.71	[3.49-6.37]	Illumina [539000] (imputed)	N
1023	chr18	57503377	57503378	rs8093763	21106707	Gu J	2010-11-24	Hum Mol Genet	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Response to bleomycin (chromatid breaks)	673 European ancestry individuals	834 European ancestry individuals	18q21.32	PMAIP, Noxa	rs8093763-A	0.25	3E-8		0.18	[0.12-0.24] unit increase	Illumina [539437]	N
1024	chr18	57549262	57549263	rs7242599	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (aggressiveness)	899 Japanese ancestry female cases, 4,835 Japanese ancestry female controls	1,030 Japanese ancestry female cases, 4,584 Japanese ancestry female controls	18q21.32	NR	rs7242599-G	0.645120631	9E-6		0.16764931	[0.094-0.242] unit increase	Affymetrix [536506]	N
1024	chr18	57562452	57562453	rs9916942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q21.32	NR	rs9916942-C	0.170168	2E-12		0.01767	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1024	chr18	57563807	57563808	rs8087293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.32	PMAIP1	rs8087293-A	0.170219	6E-11		0.019433104	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr18	57563807	57563808	rs8087293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.32	NR	rs8087293-A	0.154618	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
1024	chr18	57581486	57581487	rs142176337	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	18q21.32	Intergenic	rs142176337-T	NR	8E-8	(between families)	5.36	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1024	chr18	57610644	57610645	rs58127855	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	18q21.32	PMAIP1	rs58127855-T	0.01	6E-7		3.03	[2.01-4.97]	Affymetrix, Illumina [15838848] (imputed)	N
1024	chr18	57622286	57622287	rs4368253	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	18q21.32	PMAIP1	rs4368253-C	0.677	8E-7		1.18	[1.11-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1024	chr18	57622286	57622287	rs4368253	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.32	PMAIP1	rs4368253-C	0.69	3E-8		1.19	[1.12-1.27]	Illumina [549934]	N
1024	chr18	57637560	57637560	rs112843209	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	18q21.32	LOC105372151, NFEL23P1	rs112843209-?	NR	4E-6		2.72		Illumina [6778521] (imputed)	N
1024	chr18	57638329	57638330	rs10871774	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	18q21.32	LOC105372151, NFE2L3P1	rs10871774-?	NR	2E-6		2.631579		Illumina [6778521] (imputed)	N
1025	chr18	57673798	57673799	rs12964056	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	18q21.32	MC4R	rs12964056-A	0.24	7E-7		4.98	[NR] z score decrease	Affymetrix, Illumina [up to 583824] (imputed)	N
1025	chr18	57683654	57683655	rs28415135	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs28415135-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57704005	57704006	rs142874203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs142874203-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57704083	57704084	rs12963831	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs12963831-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57704083	57704084	rs12963831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.32		rs12963831-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1025	chr18	57707447	57707448	rs7243566	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q21.32	NR	rs7243566-T	0.2521	3E-9		0.016896987	[0.011-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1025	chr18	57721197	57721198	rs72989246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.32	NR	rs72989246-T	NR	6E-10		0.0241	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1025	chr18	57721197	57721198	rs72989246	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RNU6-567P	rs72989246-T	0.1188	2E-7		0.0546	[0.034-0.075] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1025	chr18	57721197	57721198	rs72989246	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q21.32	RNU6-567P	rs72989246-T	0.1162	2E-6		0.0508	[0.03-0.072] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1025	chr18	57722590	57722591	rs4395179	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs4395179-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57729068	57729069	rs3897644	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q21.32	NR	rs3897644-C	NR	3E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [10847151] (imputed)	N
1025	chr18	57734856	57734857	rs7234864	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or heart failure (MTAG)	89,297 European ancestry individuals with body fat percentage, 47,309 European ancestry cases with heart failure, 930,014 European ancestry controls without heart failure, 11,419 Korean ancestry, Indian Asian ancestry, Jamaican ancestry individuals with body fat percentage	NA	18q21.32		rs7234864-?	NR	8E-9		0.0383	[0.021-0.056] unit increase	NR [NR] (imputed)	N
1025	chr18	57734856	57734857	rs7234864	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	18q21.32	MC4R, PMAIP1	rs723486-T	0.26	4E-17		0.081	[0.061-0.101] unit increase	Affymetrix, Illumina [557887] (imputed)	N
1025	chr18	57735551	57735552	rs7238484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	18q21.32	PMAIP1	rs7238484-G	0.731695	4E-22		0.0214317	[0.017-0.026] unit increase	Affymetrix [NR] (imputed)	N
1025	chr18	57735944	57735945	rs36030660	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	18q21.32	PMAIP1	rs36030660-T	0.731519	4E-9		0.00609188	[0.0041-0.0081] unit increase	NR [NR] (imputed)	N
1025	chr18	57739071	57739072	rs11664369	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.32	PMAIP1	rs11664369-C	0.73294	1E-26		0.0230294	[0.019-0.027] unit increase	Affymetrix [NR] (imputed)	N
1025	chr18	57745743	57745744	rs1942863	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.32	NR	rs1942863-T	NR	4E-8		5.485	z score increase	Affymetrix [10847151] (imputed)	N
1025	chr18	57747214	57747215	rs72982934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	18q21.32		rs72982934-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1025	chr18	57751013	57751014	rs12957347	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	18q21.32	PMAIP1	rs12957347-?	0.36	7E-6	(Metabolic syndrome)			Illumina [308011]	N
1025	chr18	57757977	57757978	rs11662368	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	18q21.32	NR	rs11662368-?	NR	1E-9		8.911	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
1025	chr18	57764460	57764461	rs9963612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs9963612-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57773509	57773509	rs140355542	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.32	NR	rs140355542-I	0.24563	8E-11		0.01562	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1025	chr18	57775294	57775295	rs9966951	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q21.32	NR	rs9966951-A	NR	2E-9		0.01549	[0.01-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1025	chr18	57775683	57775684	rs17700028	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs17700028-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57789401	57789402	rs9319961	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs9319961-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1025	chr18	57790224	57790225	rs6567157	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.32	NR	rs6567157-T	NR	1E-8		5.724	z score increase	Affymetrix [10847151] (imputed)	N
1025	chr18	57793208	57793209	rs1942880	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	18q21.32	MC4R	rs1942880-T	0.339	1E-8	(Trans-ethnic initial)	0.0228	[0.016-0.03] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1025	chr18	57802713	57802714	rs72982988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	18q21.32		rs72982988-A	0.189182213	5E-15		0.09331023	[0.07-0.117] unit increase	Illumina [13429769] (imputed)	N
1025	chr18	57802713	57802714	rs72982988	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	18q21.32	MC4R	rs72982988-A		4E-14		1.53	[NR]	Illumina [10000000] (imputed)	N
1025	chr18	57802713	57802714	rs72982988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.32	RP11-795H16.3	rs72982988-A	0.233181	5E-11		0.017371027	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr18	57808977	57808978	rs66723169	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	18q21.32	MC4R	rs66723169-C	0.769043	2E-16		0.02249	[0.017-0.028] unit decrease	Affymetrix [19400838] (imputed)	N
1026	chr18	57808977	57808978	rs66723169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.32	RP11-795H16.3	rs66723169-A	0.230188	2E-11		0.017698664	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr18	57808977	57808978	rs66723169	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	18q21.32	MC4R	rs66723169-A	0.232	8E-19		0.0155	[0.012-0.019] unit increase	Affymetrix [~ 7740000] (imputed)	N
1026	chr18	57809743	57809744	rs117758180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs117758180-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
1026	chr18	57811981	57811982	rs17700144	20421936	Scherag A	2010-04-22	PLoS Genet	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	18q21.32	MC4R	rs17700144-A	NR	6E-11		1.22	[1.09-1.37]	Affymetrix, Illumina [1596878] (imputed)	N
1026	chr18	57824037	57824038	rs7240682	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.32	NR	rs7240682-C	NR	3E-10		6.284	z score increase	Affymetrix [10847151] (imputed)	N
1026	chr18	57826569	57826570	rs12967878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	18q21.32		rs12967878-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1026	chr18	57828636	57828637	rs2331841	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	18q21.32	MC4R	rs2331841-A	0.25	2E-11		0.046	[0.032-0.060] unit increase	Illumina [2178018] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	18q21.32		rs6567160-C	0.216629	1E-53		0.0506334	[0.044-0.057] unit increase	Illumina [13479924] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	18q21.32		rs6567160-C	NR	5E-25		0.0785	[0.064-0.093] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	18q21.32		rs6567160-C	0.216186087	3E-10		0.07472538	[0.051-0.098] unit increase	Illumina [13134967] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	18q21.32		rs6567160-C	NR	5E-14		0.0678	[0.05-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q21.32		rs6567160-C	NR	4E-47		0.022	[0.019-0.025] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.32		rs6567160-C	NR	3E-118		0.0518	[0.047-0.056] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	18q21.32		rs6567160-C	0.216822	2E-36		0.0485736	[0.041-0.056] unit increase	Illumina [13479178] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	18q21.32		rs6567160-C	0.23	4E-8		0.013	mmol/L increase	NR [NR] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	18q21.32		rs6567160-C	0.23	2E-19		0.02	nmol/L decrease	NR [NR] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	18q21.32		rs6567160-C	0.23	1E-35				NR [NR] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	18q21.32		rs6567160-C	0.23	5E-25		0.023	mmol/L decrease	NR [NR] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	18q21.32		rs6567160-C	0.23	5E-48		0.026	% increase	NR [NR] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q21.32	NR	rs6567160-C	0.2362	8E-34		0.0539	[0.045-0.063] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs6567160-?	NR	7E-126				Affymetrix [~ 8270000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	18q21.32	NR	rs6567160-T	NR	7E-13	(EA)	0.1669	[0.12-0.21] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	18q21.32	NR	rs6567160-?	NR	2E-11		0.05596639	[0.04-0.072] unit increase	Illumina [32062178] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q21.32		rs6567160-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q21.32		rs6567160-?	NR	3E-55				NR [~ 8900000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.32		rs6567160-?	NR	1E-125				NR [~ 8900000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs6567160-?	NR	2E-62		0.43442	[0.38-0.49] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs6567160-?	NR	1E-36	(male)	0.52294	[0.44-0.6] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs6567160-?	NR	1E-30	(female)	0.32736	[0.27-0.38] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	18q21.32	NA	rs6567160-T	0.7532	3E-39		0.0263	[0.022-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.32	NA	rs6567160-T	0.7518	8E-184		0.0552	[0.051-0.059] unit decrease	NR [~ 27400000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q21.32	NA	rs6567160-T	0.7518	8E-184		0.0552	[0.051-0.059] unit decrease	NR [~ 27400000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q21.32	NA	rs6567160-T	0.7518	8E-184		0.0552	[0.051-0.059] unit decrease	NR [~ 27400000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	18q21.32	MC4R	rs6567160-T	0.7661	3E-10		0.2242	[0.15-0.29] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q21.32	NR	rs6567160-T	NR	7E-70		0.052	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	18q21.32	MC4R	rs6567160-A		2E-18		0.0088	[0.0068-0.0108] unit decrease	Illumina [at least 200000]	N
1026	chr18	57829134	57829135	rs6567160	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q21.32	PMAIP1, MC4R	rs6567160-C	0.23	2E-84		0.054	[0.048-0.06] unit increase	Illumina [6108953] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q21.32	PMAIP1, MC4R	rs6567160-C	0.217	8E-37	(Japanese)	0.052	[0.044-0.06] unit increase	Illumina [6108953] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	4E-55				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	4E-28	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	1E-31	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	5E-9	(men)	0.0666	[0.044-0.089] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	2E-7	(women)	0.056	[0.035-0.077] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	2E-14		0.0611	[0.045-0.077] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	9E-43		0.0582	[0.05-0.066] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	4E-25	(men)	0.0634	[0.051-0.075] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	2E-23	(women)	0.0548	[0.044-0.066] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	3E-54		0.0579	[0.051-0.065] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	1E-31	(men)	0.0635	[0.053-0.074] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.32	MC4R	rs6567160-T	0.7603	1E-28	(women)	0.0542	[0.045-0.064] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	18q21.32	MC4R	rs6567160-C	0.198	5E-10	(AA,Women)	0.064	[0.044-0.084] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	18q21.32	MC4R	rs6567160-C	0.197	2E-64		0.059	[0.043-0.075] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	18q21.32	MC4R	rs6567160-C	0.197	2E-12	(AA)	0.059	[0.043-0.075] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	18q21.32	MC4R	rs6567160-C	NR	1E-28	(additive model)	0.054	[0.044-0.064] unit increase	NR [9288881] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	18q21.32	MC4R	rs6567160-C	0.25	6E-9	(men)	0.042	[0.028-0.056] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	18q21.32	MC4R	rs6567160-C	0.25	1E-10		0.034	[0.024-0.044] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	18q21.32	MC4R	rs6567160-C	0.24	8E-8	(European)	0.03	[0.018-0.042] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	18q21.32	MC4R	rs6567160-C	0.24	1E-6	(European men)	0.038	[0.022-0.054] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	18q21.32	MC4R	rs6567160-C	0.23	1E-9		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q21.32	NR	rs6567160-T	0.762873575358056	9E-66		0.053833127	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	MC4R	rs6567160-C	0.237	5E-34	(EA, women)	0.056	[0.047-0.065] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1026	chr18	57829134	57829135	rs6567160	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	MC4R	rs6567160-C	0.236	7E-59		0.056	[0.049-0.063] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1026	chr18	57829134	57829135	rs6567160	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	MC4R	rs6567160-C	0.236	4E-53	(EA)	0.056	[0.049-0.063] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1026	chr18	57829134	57829135	rs6567160	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.32	MC4R	rs6567160-C	0.234	5E-30	(EA, men)	0.055	[0.045-0.064] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1026	chr18	57829134	57829135	rs6567160	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs6567160-T	0.7658	7E-15	(EA, men)	0.0437	[0.033-0.055] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs6567160-T	0.7658	3E-33	(EA)	0.0483	[0.04-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs6567160-T	0.7658	3E-24	(EA, women)	0.053	[0.043-0.063] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	24064335	Pei YF	2013-10-08	Hum Mol Genet	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Fat body mass	6,433 European ancestry individuals, 709 African American individuals, 408 Hispanic individuals, 1,622 Han Chinese ancestry individuals	4,967 European ancestry individuals, 2,740 Han Chinese ancestry individuals	18q21.32	MC4R	rs6567160-C	NR	3E-11		0.09	[0.07-0.11] unit increase	Affymetrix, Illumina [4325550] (imputed)	N
1026	chr18	57829134	57829135	rs6567160	24064335	Pei YF	2013-10-08	Hum Mol Genet	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	18q21.32	MC4R	rs6567160-C	NR	8E-19		0.09	[0.070-0.110] kg/m2 increase	Affymetrix, Illumina [4325550] (imputed)	N
1026	chr18	57832856	57832856	rs35614134	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q21.32	PMAIP1, MC4R	rs35614134-?	NR	6E-17		0.028599858	[0.022-0.035] unit increase	Illumina [27896057] (imputed)	N
1026	chr18	57832856	57832856	rs35614134	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	18q21.32	MC4R	rs35614134-AC	0.236928	2E-43		1.23	[1.20-1.27]	Illumina [~ 41266535] (imputed)	N
1026	chr18	57832862	57832862	rs397858888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	18q21.32	RNU4-17P	rs397858888-A	0.7628	2E-7		0.0753	[0.047-0.104] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57832862	57832862	rs397858888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	18q21.32	RNU4-17P	rs397858888-A	0.7635	2E-9		0.0825	[0.056-0.109] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57832862	57832862	rs397858888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	18q21.32	RNU4-17P	rs397858888-A	0.7635	2E-7		0.0713	[0.044-0.098] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57838400	57838401	rs663129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	18q21.32		rs663129-A	NR	3E-8		0.0321	[0.021-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1026	chr18	57838400	57838401	rs663129	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	18q21.32		rs663129-?	NR	3E-18		0.0582	[0.038-0.079] unit decrease	NR [NR] (imputed)	N
1026	chr18	57838400	57838401	rs663129	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	18q21.32	PMAIP1, MC4R	rs663129-?	NR	4E-9		0.0334741	[0.022-0.045] unit increase	Illumina [4804024] (imputed)	N
1026	chr18	57838400	57838401	rs663129	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	18q21.32	NR	rs663129-G	0.7844	2E-14		0.0794	[0.059-0.1] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1026	chr18	57838400	57838401	rs663129	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q21.32	MC4R	rs663129-G	0.766595	7E-90		0.0332832	[0.03-0.037] unit decrease	Affymetrix [12370749]	N
1026	chr18	57838400	57838401	rs663129	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	18q21.32	MC4R	rs663129-A	0.22	5E-14		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
1026	chr18	57838400	57838401	rs663129	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	18q21.32	PMAIP1, MC4R	rs663129-A	0.26	3E-8	(additive model)	1.06	[1.04-1.08]	Affymetrix, Illumina [8600000] (imputed)	N
1026	chr18	57838400	57838401	rs663129	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs663129-A	0.2342	4E-18	(EA, men)	0.0503	[0.039-0.062] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57838400	57838401	rs663129	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs663129-A	0.2342	1E-32	(EA)	0.0499	[0.042-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57838400	57838401	rs663129	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs663129-A	0.2342	1E-19	(EA,women)	0.0497	[0.039-0.06] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57839768	57839769	rs571312	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	18q21.32	MC4R	rs571312-A	0.23	2E-10		0.059	[0.041-0.077] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs571312-A	0.2878	6E-8	(men)	0.0657	[0.042-0.089] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs571312-A	0.2689	4E-12		0.0603	[0.043-0.077] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs571312-A	0.2347	3E-7	(EA, women)	0.063	[0.039-0.087] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs571312-?	NR	5E-24	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs571312-A	0.2455	1E-25	(men)	0.0646	[0.052-0.077] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs571312-A	0.2365	7E-22	(EA, men)	0.065	[0.052-0.078] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	18q21.32	MC4R	rs571312-A	NR	3E-8				NR [25015711] (imputed)	N
1026	chr18	57839768	57839769	rs571312	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index (age interaction)	9,377 children and adolescents	3,918 European ancestry children and adolescents	18q21.32	MC4R	rs571312-A	0.234	5E-9				Illumina [~ 2200000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	18q21.32	MC4R	rs571312-A	0.234	5E-7	(age 8)	0.14	[0.14-0.14] unit increase	Illumina [~ 2200000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	18q21.32	MC4R	rs571312-A	0.234	4E-9	(age 1-17)			Illumina [~ 2200000] (imputed)	N
1026	chr18	57839768	57839769	rs571312	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	18q21.32	MC4R	rs571312-A	0.24	6E-42		0.23	[0.17-0.29] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1026	chr18	57841588	57841589	rs591166	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	18q21.32	MC4R	rs591166-A	0.24	7E-14		0.0464	[0.034-0.059] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1026	chr18	57846076	57846077	rs663640	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	18q21.32	MC4R	rs663640-T	0.214286	2E-7		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1026	chr18	57846076	57846077	rs663640	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q21.32	NR	rs663640-C	0.7822	1E-19		0.0503	[0.04-0.061] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1026	chr18	57846076	57846077	rs663640	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs663640-?	NR	8E-7	(male)	0.15563	[0.094-0.217] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57846076	57846077	rs663640	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs663640-?	NR	3E-7	(female)	0.21232	[0.13-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57846076	57846077	rs663640	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q21.32	NR	rs663640-?	NR	1E-12		0.18202	[0.13-0.23] unit increase	Affymetrix [7794483] (imputed)	N
1026	chr18	57846076	57846077	rs663640	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	18q21.32	intergenic	rs663640-T	0.222	2E-8		0.0383	[0.025-0.052] unit increase	Affymetrix [at least 7947838] (imputed)	N
1026	chr18	57848368	57848369	rs523288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18q21.32		rs523288-T	NR	1E-17		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1026	chr18	57848368	57848369	rs523288	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	18q21.32	RP11, 795H16.2	rs523288-A	0.2396	1E-11		0.018061912	[0.012-0.024] unit increase	NR [9417325] (imputed)	N
1026	chr18	57848368	57848369	rs523288	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.32	MC4R	rs523288-T	0.2377	8E-13		1.05	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1026	chr18	57848530	57848531	rs2168711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q21.32		rs2168711-C	NR	2E-168		0.0538	[0.05-0.058] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1026	chr18	57848530	57848531	rs2168711	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	18q21.32	MC4R	rs2168711-C	0.199531	2E-21		1.27	[1.21-1.33]	Illumina [41266535] (imputed)	N
1026	chr18	57848650	57848651	rs66922415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	18q21.32		rs66922415-G	0.227604	1E-16		0.0199777	[0.015-0.025] unit increase	Illumina [13479295] (imputed)	N
1026	chr18	57848650	57848651	rs66922415	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	18q21.32	MC4R	rs66922415-G	0.234519	6E-19		0.0678461	[0.053-0.083] unit increase	Affymetrix [9463307] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	18q21.32		rs12967135-A	0.2408	3E-6		0.0059	[0.0034-0.0084] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2377	1E-21		0.0699	[0.056-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2377	3E-11		0.051	[0.036-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2377	3E-11		0.051	[0.036-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2394	7E-11		0.0592	[0.041-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2378	5E-7		0.0366	[0.022-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q21.32	RP11-795H16.2	rs12967135-A	0.2369	1E-16		0.0616	[0.047-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	18q21.32	MC4R	rs12967135-A	NR	4E-10				NR [2501543] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	18q21.32	MC4R	rs12967135-A	0.25	4E-8		0.026	[NR] unit decrease	NR [NR] (imputed)	N
1026	chr18	57849022	57849023	rs12967135	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	18q21.32	MC4R, RPS3A	rs12967135-A	0.23	7E-9		0.42	[0.24-0.6] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.32	MC4R	rs58084604-C	0.766902	3E-104		0.0351865	[0.032-0.038] unit decrease	Affymetrix [12370749]	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	7E-8				Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	8E-8				Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	5E-7		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	2E-11				Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	8E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	5E-15				Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	3E-8		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	18q21.32	PMAIP1, MC4R	rs58084604-T	NR	1E-9		0.007067	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57849428	57849429	rs58084604	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	18q21.32	NR	rs58084604-T	0.236497	7E-10		6.162	unit decrease	NR [10847151] (imputed)	N
1026	chr18	57850421	57850422	rs538656	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	18q21.32	NR	rs538656-T	0.23	2E-21		0.0205	[0.016-0.025] unit increase	NR [NR]	N
1026	chr18	57850421	57850422	rs538656	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q21.32	NR	rs538656-T	0.2347	2E-54		0.04534486	[0.04-0.051] unit increase	Affymetrix [10549349] (imputed)	N
1026	chr18	57850421	57850422	rs538656	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	18q21.32	MC4R	rs538656-T	0.24	2E-36	(Obesity class I)	1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1026	chr18	57850927	57850930	rs71336392	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.32	intergenic	rs71336392-G	0.237361	5E-8	(females)	0.02038	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1026	chr18	57850927	57850930	rs71336392	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.32	intergenic	rs71336392-G	0.237361	2E-37	(females)	0.04843	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1026	chr18	57850927	57850930	rs71336392	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.32	intergenic	rs71336392-G	0.237361	2E-31	(males)	0.04811	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1026	chr18	57850927	57850930	rs71336392	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	18q21.32	intergenic	rs71336392-G	0.237361	1E-62		0.0482	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs17782313-C	0.23540000000000005	2E-11	(EA)	0.0616	[0.044-0.08] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs17782313-C	0.23409999999999997	4E-6	(EA, men)	0.0641	[0.037-0.091] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs17782313-?	NR	3E-13	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	18q21.32	MC4R	rs17782313-T	0.79	2E-8		0.039	[0.025-0.053] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	18q21.32	MC4R	rs17782313-T	0.76	4E-11		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	18q21.32	MC4R	rs17782313-C	0.24	4E-9	(adults)	1.26	[1.09-1.43]	Illumina [308846]	N
1026	chr18	57851096	57851097	rs17782313	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	18q21.32	MC4R	rs17782313-C	0.18	5E-15				Illumina [308846]	N
1026	chr18	57851096	57851097	rs17782313	19151714	Meyre D	2009-01-18	Nat Genet	Genome-wide association study for early-onset and morbid adult obesity identifies three new risk loci in European populations.	Obesity	695 European ancestry adult cases, 731 European ancestry adult controls, 685 European ancestry child cases, 685 European ancestry child controls	1,171 European ancestry adult cases, 1,114 European ancestry adult controls, 4,417 European ancestry adults, 896 European ancestry child cases, 1,297 European ancestry child and young adult controls, 5,291 European ancestry children	18q21.32	MC4R	rs17782313-C	0.18	2E-8	(children)	1.22	[1.05-1.40]	Illumina [308846]	N
1026	chr18	57851096	57851097	rs17782313	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	18q21.32	MC4R	rs17782313-C	0.21	5E-18		0.2	[0.12-0.28] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
1026	chr18	57851096	57851097	rs17782313	18454148	Loos RJ	2008-05-04	Nat Genet	Common variants near MC4R are associated with fat mass, weight and risk of obesity.	Body mass index	16,876 European ancestry adult individuals	60,352 European ancestry adult individuals, 5,988 European ancestry children	18q21.32	MC4R	rs17782313-C	0.24	3E-15		0.05	[0.04-0.06] unit increase	Affymetrix [344883]	N
1026	chr18	57851459	57851459	rs371326986	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg lean mass (fat adjusted)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	18q21.32	MC4R	rs371326986-?	NR	6E-46		0.033	NR unit decrease	Affymetrix, Illumina [6879267] (imputed)	N
1026	chr18	57851459	57851459	rs371326986	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass and leg lean mass (pleiotropy)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	18q21.32	MC4R	rs371326986-?	NR	2E-95				Affymetrix, Illumina [6879267] (imputed)	N
1026	chr18	57851461	57851461	rs200411784	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	18q21.32	NR	rs200411784-?	0.7615	3E-8				Affymetrix, Illumina [at least 2500000] (imputed)	N
1026	chr18	57851762	57851763	rs10871777	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index and bone mineral density (pleiotropy)	14,489 individuals	217,822 individuals	18q21.32		rs10871777-G	NR	2E-152		0.103	[0.093-0.113] unit increase	NR [6879267]	N
1026	chr18	57851762	57851763	rs10871777	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index	14,489 individuals	217,822 individuals	18q21.32		rs10871777-G	NR	3E-94		0.103	[0.093-0.113] unit increase	NR [6879267]	N
1026	chr18	57851762	57851763	rs10871777	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	18q21.32	MC4R	rs10871777-?	NR	2E-19				NR [5554549] (imputed)	N
1026	chr18	57851762	57851763	rs10871777	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	18q21.32	MC4R	rs10871777-?	NR	3E-81				NR [5554549] (imputed)	N
1026	chr18	57851762	57851763	rs10871777	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q21.32	NR	rs10871777-G	NR	5E-13		0.02024	[0.015-0.026] unit decrease	Affymetrix [10847151] (imputed)	N
1026	chr18	57851762	57851763	rs10871777	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	18q21.32	ENSG00000267620	rs10871777-G	0.24	8E-17		0.003	[0.0022-0.0038] unit decrease	Affymetrix [15275733] (imputed)	N
1026	chr18	57851762	57851763	rs10871777	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	18q21.32	MC4R	rs10871777-G	0.24	2E-27	(Overweight)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1026	chr18	57852586	57852587	rs476828	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA			rs476828-C	0.249389048	2E-15		1.0779732	[1.058136616-1.098181715]	Illumina [8919992] (imputed)	N
1026	chr18	57852586	57852587	rs476828	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA		MC4R	rs476828-C	0.243	5E-27		1.09	[1.07-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1026	chr18	57852586	57852587	rs476828	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA		MC4R	rs476828-C	0.239	2E-10		0.043	NR cups per day increase	NR [NR]	N
1026	chr18	57852586	57852587	rs476828	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate variance	341,584 European ancestry individuals	NA		MC4R	rs476828-?	NR	2E-20				NR [5554549] (imputed)	N
1026	chr18	57852586	57852587	rs476828	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Basal metabolic rate	341,584 European ancestry individuals	NA		MC4R	rs476828-?	NR	1E-148				NR [5554549] (imputed)	N
1026	chr18	57852586	57852587	rs476828	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls		MC4R	rs476828-C	0.24	9E-14		1.33	[1.23-1.43]	Affymetrix [~ 2000000] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	32970232	Zhang YX	2020-09-24	Mol Genet Genomics	Three pleiotropic loci associated with bone mineral density and lean body mass.	Leg lean mass	9,618 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	up to 500,000 European ancestry individuals	18q21.32	NR	rs11152213-C	0.25	1E-150		0.06	[0.056-0.064] unit increase	Affymetrix, Illumina [12061510] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	32970232	Zhang YX	2020-09-24	Mol Genet Genomics	Three pleiotropic loci associated with bone mineral density and lean body mass.	Bone mineral density or leg lean mass (pleiotropy)	9,618 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	up to 500,000 European ancestry individuals	18q21.32	NR	rs11152213-C	0.25	7E-6				Affymetrix, Illumina [12061510] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	18q21.32	MC4R	rs11152213-?	NR	6E-15				NR [5554549] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	18q21.32	MC4R	rs11152213-?	NR	1E-70				NR [5554549] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	18q21.32	MC4R	rs11152213-?	NR	2E-16				NR [5554549] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	18q21.32	MC4R	rs11152213-?	NR	1E-72				NR [5554549] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	18q21.32	NR	rs11152213-?	NR	9E-6		0.03479426	[0.019-0.05] unit increase	Illumina [32062178] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	18q21.32	MC4R	rs11152213-A	0.755	7E-13		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1026	chr18	57852947	57852948	rs11152213	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	18q21.32	MC4R	rs11152213-C	0.24	3E-22	(Obesity class II)	1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1026	chr18	57854466	57854467	rs8082946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs8082946-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1026	chr18	57854693	57854694	rs34633411	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q21.32	MC4R	rs34633411-T	0.2374	2E-19		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
1026	chr18	57854693	57854694	rs34633411	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	18q21.32	intergenic	rs34633411-T	0.2444	6E-9		0.0423	[0.028-0.057] unit increase	NR [8041861] (imputed)	N
1026	chr18	57855319	57855319	rs71336393	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	18q21.32	NR	rs71336393-GA	0.232922	2E-11		0.0783114	[0.056-0.101] unit increase	Affymetrix [21375087] (imputed)	N
1026	chr18	57855319	57855319	rs71336393	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.32	NR	rs71336393-GA	0.235613	8E-27		0.0853122	[0.069-0.101] unit increase	Affymetrix [17914406] (imputed)	N
1026	chr18	57858801	57858802	rs492443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	18q21.32		rs492443-G	NR	9E-14		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1026	chr18	57858828	57858829	rs8089364	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	18q21.32	MC4R	rs8089364-C	0.27	4E-21		1.24	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1026	chr18	57858828	57858829	rs8089364	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	18q21.32	MC4R	rs8089364-C	NR	6E-8	(men)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	18q21.32	MC4R	rs12969709-A	0.262	9E-9	(women)	0.0617	[0.041-0.083] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2662	5E-21	(EA,women)	0.0563	[0.045-0.068] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2644	7E-35	(EA)	0.058	[0.049-0.067] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2598	5E-22	(women)	0.0548	[0.044-0.066] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2573	5E-10	(EA, men)	0.0613	[0.042-0.081] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-?	NR	7E-28	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-?	NR	2E-25	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-?	NR	1E-41	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2644	5E-41	(EA)	0.0568	[0.049-0.065] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2644	1E-25	(EA, women)	0.0567	[0.046-0.067] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2612	2E-27	(women)	0.056	[0.046-0.066] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57859562	57859563	rs12969709	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs12969709-A	0.2612	1E-45		0.057	[0.049-0.065] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57861662	57861663	rs921971	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q21.32	MC4R	rs921971-T	0.734101	3E-12		0.0157927	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1026	chr18	57861960	57861961	rs1457489	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.32		rs1457489-G	0.73538	1E-8		0.0234228	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr18	57861960	57861961	rs1457489	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.32		rs1457489-G	0.73538	1E-8		0.0234634	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr18	57861960	57861961	rs1457489	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	18q21.32		rs1457489-G	0.73538	4E-8		0.0230766	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1026	chr18	57861960	57861961	rs1457489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	18q21.32	NR	rs1457489-A	0.2806	3E-36		0.024	[0.02-0.028] unit increase	NR [~ 27400000] (imputed)	N
1026	chr18	57862490	57862491	rs73451576	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.32	NR	rs73451576-A	0.0122	2E-8	(A2M)	1.655	NR unit increase	Illumina [1671387] (imputed)	N
1026	chr18	57863230	57863231	rs185575165	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.32	NR	rs185575165-T	0.720079	2E-15		0.0185077	[0.014-0.023] unit decrease	NR [NR]	N
1026	chr18	57864091	57864092	rs12954782	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.32	MC4R	rs12954782-C	0.732488	2E-15		0.0166955	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	9E-9		0.0236616	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	4E-9		0.0245753	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	5E-8		0.0226316	[0.014-0.031] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	1E-8		0.0233506	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	3E-9		0.024555	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	3E-9		0.0249311	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	18q21.32		rs688671-A	0.732867	4E-9		0.024316	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1026	chr18	57867525	57867526	rs688671	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	18q21.32		rs688671-G	NR	8E-24		0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	18q21.32	MC4R, PMAIP1	rs12955983-G	0.28	9E-60				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x age interaction	up to 112,279 European ancestry individuals aged <50, up to 197,610 European ancestry individuals aged >50	NA	18q21.32	MC4R, PMAIP1	rs12955983-G	0.28	7E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	18q21.32	MC4R, PMAIP1	rs12955983-G	0.28	2E-23		0.038	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	18q21.32	MC4R	rs12955983-G	0.28	2E-41		0.068	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	18q21.32	MC4R, PMAIP1	rs12955983-G	0.28	2E-58				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1026	chr18	57872988	57872989	rs12955983	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	18q21.32	MC4R	rs12955983-A	0.73	2E-6	(women)	0.036	[0.022-0.051] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1026	chr18	57875366	57875367	rs76752804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs76752804-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	18q21.32	MC4R	rs11663816-T	0.7544	1E-12		0.0257	[0.019-0.033] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	18q21.32	MC4R	rs11663816-T	0.7295	1E-12		0.030377	[0.022-0.039] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	18q21.32	NR	rs11663816-T	0.2451	7E-12	(women)	0.0358	[0.026-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs11663816-C	0.26670000000000005	3E-20	(men)	0.0626	[0.049-0.076] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	18q21.32	MC4R	rs11663816-C	0.26459999999999995	4E-37		0.0573	[0.048-0.066] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	18q21.32	MC4R	rs11663816-?	NR	2E-47				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs11663816-T	0.7348	3E-11	(EA)	0.025	[0.018-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57876226	57876227	rs11663816	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs11663816-T	0.7348	1E-9	(EA, women)	0.0305	[0.021-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1026	chr18	57881361	57881362	rs2045438	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q21.32	NR	rs2045438-T	0.2669	4E-6	(EA)	0.0323	[0.019-0.046] unit decrease	Illumina [~ 11800000] (imputed)	N
1026	chr18	57882786	57882787	rs489693	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	18q21.32	MC4R	rs489693-C	0.67465	1E-12		0.01759	[0.013-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
1026	chr18	57882786	57882787	rs489693	32929176	Feng GJ	2020-09-14	J Hum Genet	Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.	Trunk lean mass	8,508 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	215,234 European ancestry individuals	18q21.32	NR	rs489693-C	0.68	9E-113		0.047	[0.043-0.051] unit decrease	Affymetrix [12061510] (imputed)	N
1026	chr18	57882786	57882787	rs489693	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	18q21.32	NR	rs489693-A	NR	1E-9		6.091	z score decrease	Affymetrix [10847151] (imputed)	N
1026	chr18	57882786	57882787	rs489693	22566560	Malhotra AK	2012-05-07	Arch Gen Psychiatry	Association between common variants near the melanocortin 4 receptor gene and severe antipsychotic drug-induced weight gain.	Antipsychotic drug-induced weight gain	77 European ancestry individuals, 32 African American individuals, 30 individuals	183 European ancestry individuals, 22 African American individuals	18q21.32	MC4R	rs489693-?	0.34	6E-12				Illumina [803582]	N
1026	chr18	57882786	57882787	rs489693	19557197	Heard-Costa NL	2009-06-26	PLoS Genet	NRXN3 is a novel locus for waist circumference: a genome-wide association study from the CHARGE Consortium.	Waist circumference	31,373 European ancestry individuals	38,641 individuals	18q21.32	MC4R	rs489693-?	NR	4E-7				Affymetrix, Illumina [up to 512349]	N
1026	chr18	57884749	57884750	rs12970134	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	18q21.32	MC4R	rs12970134-A	0.265120385616101	5E-12		0.0555	[0.04-0.071] unit increase	NR [5035015] (imputed)	N
1026	chr18	57884749	57884750	rs12970134	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	18q21.32	MC4R	rs12970134-A	0.2674	5E-10	(EA)	0.0714	[0.049-0.094] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57884749	57884750	rs12970134	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	18q21.32	MC4R	rs12970134-A	0.2674	3E-12		0.062	[0.044-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1026	chr18	57884749	57884750	rs12970134	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	18q21.32	MC4R	rs12970134-A	0.27	3E-8		1.08	[1.03-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
1026	chr18	57884749	57884750	rs12970134	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	18q21.32	MC4R	rs12970134-A	0.270057407439791	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1026	chr18	57884749	57884750	rs12970134	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	18q21.32	MC4R	rs12970134-A	0.3	5E-13		4.66	[3.41-5.91] percentage SD increase	Illumina [305846]	N
1026	chr18	57884749	57884750	rs12970134	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	18q21.32	MC4R	rs12970134-A	0.3	1E-12		4.38	[3.16-5.60] % SD increase	Illumina [305846]	N
1026	chr18	57884749	57884750	rs12970134	18454146	Chambers JC	2008-05-04	Nat Genet	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry male individuals	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	18q21.32	MC4R	rs12970134-A	0.36	2E-9	(waist circumference)	0.88	[0.59-1.17] cm increase	Illumina [308067]	N
1026	chr18	57891071	57891072	rs9957921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q21.32		rs9957921-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1026	chr18	57896741	57896742	rs17175643	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	18q21.32	ENSG00000267620	rs17175643-C	NR	1E-9		0.0092261	[0.0062-0.0122] unit decrease	Affymetrix [18485882] (imputed)	N
1026	chr18	57897085	57897086	rs62096058	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	18q21.32	NR	rs62096058-A	NR	5E-9		0.01483	[0.0099-0.0198] unit decrease	Affymetrix [10847151] (imputed)	N
1026	chr18	57897802	57897803	rs12960928	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	18q21.32	MC4R	rs12960928-C	0.27	2E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1026	chr18	57908674	57908675	rs11665052	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	18q21.32	NR	rs11665052-A	0.263176	5E-10		6.21	z score increase	NR [10847151] (imputed)	N
1026	chr18	57913702	57913703	rs12963186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs12963186-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
1026	chr18	57913964	57913965	rs35693910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	18q21.32	RP11-396N11.1	rs35693910-A	NR	8E-9		0.0203894	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1026	chr18	57913964	57913965	rs35693910	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.32		rs35693910-?	NR	6E-9		0.0140548	[0.0094-0.0188] unit decrease	Affymetrix [20259828] (imputed)	N
1026	chr18	57914643	57914644	rs56069042	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	18q21.32	MC4R	rs56069042-A	0.96	4E-9		0.099	[0.066-0.132] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1026	chr18	57914678	57914679	rs68033110	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	18q21.32	NR	rs68033110-A	0.245144	2E-9		0.0689746	[0.046-0.092] unit increase	Affymetrix [21375087] (imputed)	N
1026	chr18	57915447	57915448	rs61194872	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RP11-396N11.1	rs61194872-T	0.0668	8E-6		0.0602	[0.034-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1026	chr18	57919709	57919710	rs113602013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	18q21.32		rs113602013-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1026	chr18	57924822	57924823	rs28822480	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	18q21.32	MC4R	rs28822480-A	0.29	7E-13		0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
1026	chr18	57924822	57924823	rs28822480	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	18q21.32	MC4R	rs28822480-A	0.29	8E-10		0.037	[0.025-0.049] unit increase	Affymetrix [at least 8900000] (imputed)	N
1026	chr18	57926293	57926294	rs117085301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs117085301-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57945279	57945280	rs7227810	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	18q21.32	MC4R	rs7227810-?	NR	3E-13		0.0192854	[0.014-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
1027	chr18	57945279	57945280	rs7227810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs7227810-?	NR	3E-62				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57948399	57948400	rs80116344	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RP11-396N11.1	rs80116344-A	0.0591	7E-7		0.0726	[0.044-0.101] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	57948399	57948400	rs80116344	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	RP11-396N11.1	rs80116344-A	0.0592	8E-6		0.0683	[0.038-0.098] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	57948399	57948400	rs80116344	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	RP11-396N11.1	rs80116344-A	0.0592	8E-6		0.0683	[0.038-0.098] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	57949854	57949855	rs12962523	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs12962523-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57951432	57951433	rs17773370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs17773370-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57958243	57958244	rs9944545	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q21.32	NR	rs9944545-C	NR	9E-31		0.032	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1027	chr18	57963116	57963117	rs17773430	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q21.32	NR	rs17773430-C	0.3131	5E-12		0.01922109	[0.014-0.025] unit increase	Affymetrix [10549349] (imputed)	N
1027	chr18	57963116	57963117	rs17773430	22013104	Melka MG	2011-10-19	J Clin Endocrinol Metab	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity-related traits	598 French Canadian founder adolescent individuals	NA	18q21.32	MC4R	rs17773430-?		6E-6	(BMI)			Illumina [530011]	N
1027	chr18	57967185	57967186	rs7231880	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q21.32	MC4R	rs7231880-T	0.7065	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1027	chr18	57967270	57967273	rs143814719	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RP11-396N11.1	rs143814719-CAGA	0.7272	1E-6		0.0351	[0.021-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	57967654	57967655	rs75941710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs75941710-?	NR	1E-24				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57971624	57971625	rs111526888	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.32		rs111526888-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1027	chr18	57973549	57973550	rs72990604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs72990604-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	57987858	57987859	rs11664704	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	18q21.32	NR	rs11664704-A	0.0614953	3E-8		0.0792049	[0.051-0.107] unit increase	Affymetrix [17914406] (imputed)	N
1027	chr18	57987858	57987859	rs11664704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs11664704-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	58010895	58010896	rs79131845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs79131845-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	58013564	58013565	rs59992789	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	MC4R	rs59992789-T	0.771	5E-8		0.043	[0.028-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	58013564	58013565	rs59992789	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q21.32	MC4R	rs59992789-T	0.771	5E-8		0.043	[0.028-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	58013564	58013565	rs59992789	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	18q21.32	MC4R	rs59992789-T	0.7692	3E-7		0.0474	[0.029-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	58013564	58013565	rs59992789	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q21.32	MC4R	rs59992789-T	0.7692	5E-7		0.0381	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1027	chr18	58027495	58027496	rs73455693	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	18q21.32	MC4R	rs73455693-G	0.96277	4E-8		0.0281128	[0.018-0.038] unit decrease	Affymetrix [NR] (imputed)	N
1027	chr18	58028971	58028972	rs78769612	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.32	NR	rs78769612-G	0.979774	3E-13		0.0545094	[0.04-0.069] unit increase	NR [NR]	N
1027	chr18	58034767	58034768	rs17066839	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	18q21.32	MC4R	rs17066839-?	NR	2E-7				Affymetrix [753382]	N
1027	chr18	58034767	58034768	rs17066839	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	18q21.32	MC4R	rs17066839-?	NR	2E-7				Affymetrix [753382]	N
1027	chr18	58034767	58034768	rs17066839	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Femoral neck bone mineral density	2,286 European ancestry individuals	NA	18q21.32	MC4R	rs17066839-?	NR	8E-7				Affymetrix [753382]	N
1027	chr18	58035203	58035204	rs1943226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs1943226-?	NR	1E-26				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	58036383	58036384	rs76227980	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	18q21.32	MC4R	rs76227980-C	0.98	2E-6		0.145	[0.086-0.204] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1027	chr18	58037432	58037433	rs35748167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	18q21.32		rs35748167-C	NR	6E-12		0.0553	[0.04-0.071] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1027	chr18	58038459	58038460	rs17773630	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs17773630-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	58038776	58038777	rs79783591	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	18q21.32		rs79783591-?	NR	7E-6		30.3498	[28.86-31.84]	NR [663083]	N
1027	chr18	58039275	58039276	rs2229616	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.32	NR	rs2229616-T	NR	5E-11		0.0583	[0.041-0.076] unit increase	Affymetrix [9000000] (imputed)	N
1027	chr18	58039275	58039276	rs2229616	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	18q21.32	NR	rs2229616-T	NR	2E-12		0.0601	[0.043-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr18	58039275	58039276	rs2229616	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	18q21.32	NR	rs2229616-T	0.02023	1E-27		0.096027	[0.079-0.113] unit decrease	Affymetrix [10549349] (imputed)	N
1027	chr18	58039275	58039276	rs2229616	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	18q21.32	NR	rs2229616-T	0.0192	3E-23		0.0616	[0.049-0.074] unit decrease	NR [~ 27400000] (imputed)	N
1027	chr18	58039275	58039276	rs2229616	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs2229616-T	0.0208	5E-9	(EA)	0.0821	[0.055-0.11] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1027	chr18	58039275	58039276	rs2229616	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs2229616-T	0.0208	2E-6	(EA,women)	0.087	[0.051-0.123] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1027	chr18	58039401	58039402	rs370479598	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Body mass index	457,756 European ancestry individuals	NA	18q21.32		rs370479598-?	NR	1E-8		0.675945	[0.44-0.91] unit increase	NR [9800000] (imputed)	N
1027	chr18	58039401	58039402	rs370479598	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	18q21.32		rs370479598-?	NR	2E-13		0.78	[0.99-0.57] unit increase	Illumina [NR]	N
1027	chr18	58039477	58039478	rs13447324	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	18q21.32	MC4R	rs13447324-T	1.0E-4	2E-10		0.542	[0.37-0.71] unit increase	Illumina [246328]	N
1027	chr18	58040788	58040789	rs34974495	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs34974495-?	NR	7E-55				Affymetrix [~ 8270000] (imputed)	N
1027	chr18	58040788	58040789	rs34974495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.32		rs34974495-?	NR	5E-56				NR [~ 8900000] (imputed)	N
1027	chr18	58047553	58047554	rs76141775	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	18q21.32		rs76141775-T	0.03838	8E-6		2.536	[1.68699999999999-3.813]	Affymetrix [7975321] (imputed)	N
1027	chr18	58048294	58048295	rs57636386	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.32	MC4R	rs57636386-T	0.916171	3E-23		0.0247018	[0.02-0.03] unit increase	Affymetrix [12370749]	N
1027	chr18	58049191	58049192	rs11873305	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q21.32	MC4R	rs11873305-A	0.9608	9E-14		0.005	[0.0036-0.0064] unit decrease	Affymetrix [15275733] (imputed)	N
1027	chr18	58049191	58049192	rs11873305	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	18q21.32	Intergenic	rs11873305-C	0.0308	5E-7	(EA)	0.1442	[0.088-0.2] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1027	chr18	58049191	58049192	rs11873305	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	18q21.32	Intergenic	rs11873305-C	0.0308	4E-7		0.129	[0.08-0.178] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1027	chr18	58049191	58049192	rs11873305	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs11873305-A	0.9594	1E-8	(EA)	0.0554	[0.036-0.074] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1027	chr18	58049191	58049192	rs11873305	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	18q21.32	MC4R	rs11873305-A	0.959771168150773	4E-7		1.18	[1.11-1.26]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1027	chr18	58050671	58050672	rs76671217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	18q21.32	NR	rs76671217-C	NR	4E-10		0.0346	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1027	chr18	58055730	58055731	rs7227255	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs7227255-A	0.022	7E-6	(EA,women)	0.0803	[0.045-0.115] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1027	chr18	58055730	58055731	rs7227255	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.32	MC4R	rs7227255-A	0.022	2E-8	(EA)	0.0767	[0.05-0.104] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1027	chr18	58056565	58056566	rs74452128	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.32	MC4R	rs74452128-C	0.9763	1E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1027	chr18	58058028	58058029	rs74550407	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	18q21.32	MC4R	rs74550407-A	0.0375	4E-8		0.004	[0.0026-0.0054] unit increase	Affymetrix [15275733] (imputed)	N
1027	chr18	58059528	58059529	rs7240064	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.32	PMAIP1	rs7240064-?	NR	7E-6	(PC 36:5)	0.19211426	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1028	chr18	58083659	58083659	rs569232867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q21.32		rs569232867-CT	NR	8E-9		0.0452	[0.03-0.06] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1028	chr18	58100399	58100400	rs8088123	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs8088123-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1028	chr18	58105428	58105429	rs948810	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs948810-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1028	chr18	58109189	58109190	rs4257308	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	18q21.32	NR	rs4257308-?	0.04	6E-6		1.55	[1.30-1.90]	Affymetrix [> 333754] (imputed)	N
1028	chr18	58133069	58133070	rs149396351	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs149396351-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1028	chr18	58141506	58141507	rs599148	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.32	RP11-325K19.3	rs599148-A	0.0376	4E-6		0.0859	[0.049-0.123] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1028	chr18	58141506	58141507	rs599148	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	18q21.32	RP11-325K19.3	rs599148-A	0.0368	7E-6		0.0859	[0.049-0.123] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1028	chr18	58157667	58157668	rs613746	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs613746-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1028	chr18	58157766	58157767	rs113728099	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q21.32	MC4R	rs113728099-G	0.975264	4E-22		0.0439845	[0.035-0.053] unit increase	Affymetrix [12370749]	N
1028	chr18	58180795	58180796	rs67611440	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs67611440-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1029	chr18	58221170	58221171	rs11152236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.32		rs11152236-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1029	chr18	58226026	58226027	rs560248	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	18q21.32	AC010928.1, MRPS5P4, MC4R	rs560248-A	NR	3E-6	(daytime napping, weekdays)	0.5294	[0.31-0.75] unit decrease	Affymetrix [7141204] (imputed)	N
1029	chr18	58232099	58232100	rs512279	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	18q21.32	LOC100421385	rs512279-C	0.59	9E-6		1.6		Affymetrix [at least 730985] (imputed)	N
1029	chr18	58232129	58232130	rs17067102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs17067102-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1029	chr18	58316344	58316345	rs9964060	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.32	PMAIP1	rs9964060-?	NR	2E-6	(3-hydroxyanthranilic acid)	0.6452096	[0.38-0.91] unit increase	Affymetrix [at least 2500000] (imputed)	N
1030	chr18	58375933	58375934	rs2168303	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	18q21.32	NR	rs2168303-A	0.9953	2E-7		1.9403	[1.21-2.67] unit decrease	Affymetrix, Illumina [2538056] (imputed)	N
1030	chr18	58444129	58444130	rs62096916	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	18q21.32	NR	rs62096916-A	0.09546	4E-6		0.2395	[0.14-0.34] unit increase	Illumina [10677593] (imputed)	N
1031	chr18	58488271	58488272	rs12966270	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	18q21.32	RP11-325K19.1	rs12966270-T	0.519758571	7E-6		0.13972	[0.079-0.201] unit increase	Illumina [6969139] (imputed)	N
1031	chr18	58533763	58533764	rs12959775	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs12959775-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1031	chr18	58579891	58579892	rs55850837	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	18q21.32		rs55850837-A	0.05	4E-8		1.45	[1.27-1.65]	Illumina [9962324] (imputed)	N
1031	chr18	58583796	58583797	rs1497980	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	18q21.32	RP11-325K19.1	rs1497980-T	0.05	3E-6		0.99	[0.58-1.4] unit increase	Illumina [5833901] (imputed)	N
1032	chr18	58639546	58639547	rs193239997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.32	NR	rs193239997-?	NR	9E-25				Affymetrix [~ 8270000] (imputed)	N
1033	chr18	58741250	58741251	rs140779949	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	18q21.32	RP11-325K19.1	rs140779949-A	0.989	5E-6		0.1861	[0.11-0.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1033	chr18	58826021	58826022	rs142981069	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (age at onset)	5,148 European ancestry users	NA	18q21.32	NR	rs142981069-G		7E-7		0.47	[0.29-0.65] unit increase	NR [5896100] (imputed)	N
1033	chr18	58840517	58840518	rs12455952	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Handedness	4,988 Spanish ancestry individuals	NA	18q21.32	HMGN1P31, CDH20	rs12455952-?		4E-8	(Handedness)	0.04517	[0.029-0.061] unit increase	Illumina [9499600] (imputed)	N
1033	chr18	58840517	58840518	rs12455952	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	18q21.32	CDH20	rs12455952-?	NR	1E-6		1.27	[1.15-1.40]	Illumina [NR] (imputed)	N
1034	chr18	58865260	58865261	rs17818263	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	18q21.32	intergenic	rs17818263-?	NR	4E-8		0.0146965	[0.0094-0.0199] unit increase	Affymetrix [25921788] (imputed)	N
1034	chr18	58873241	58873242	rs36024031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18q21.32		rs36024031-C	NR	1E-8		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1034	chr18	58873241	58873242	rs36024031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.32	NR	rs36024031-C	NR	3E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1034	chr18	58892068	58892069	rs376610691	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		18q21.32	NR	rs376610691-C	NR	6E-6	(conditioned on rs1426654)	0.869385	[0.49-1.25] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
1034	chr18	58943385	58943386	rs2220926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.32		rs2220926-T	0.4308	2E-11		0.0095	[0.0068-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1034	chr18	58973545	58973546	rs36011282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.33	Intergenic	rs36011282-A	0.432	3E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr18	58997025	58997026	rs7243203	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.33		rs7243203-A	0.3184	8E-10	(conditional-joint)	0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1035	chr18	59096823	59096824	rs183335240	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	18q21.33	MC4R, CDH20	rs183335240-A		1E-8		2.305	unit increase	Affymetrix [at least 2696785] (imputed)	N
1036	chr18	59162944	59162945	rs661051	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	18q21.33	NR	rs661051-C		6E-6		0.3908	[0.12-0.66] SD units decrease	NR [10700000] (imputed)	N
1036	chr18	59169420	59169421	rs1943334	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	18q21.33	NR	rs1943334-?	NR	2E-9		5.985	NR z score increase	Illumina [at least 830937] (imputed)	N
1036	chr18	59235014	59235015	rs138424361	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	18q21.33	NR	rs138424361-?	NR	1E-6		0.1739	[0.1-0.24] unit increase	Illumina [~ 7800000] (imputed)	N
1036	chr18	59235014	59235015	rs138424361	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	18q21.33	NR	rs138424361-?	NR	4E-6		0.2271	[0.13-0.32] unit increase	Illumina [~ 7800000] (imputed)	N
1036	chr18	59237055	59237056	rs147834038	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Entorhinal cortical thickness	2,643 Korean ancestry individuals	NA	18q21.33		rs147834038-T	0.03	5E-7		0.41	[0.25-0.57] unit decrease	NR [3930740] (imputed)	N
1037	chr18	59266370	59266371	rs2032366	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q21.33	CDH20	rs2032366-G	0.488	6E-6	(Energy balance )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1037	chr18	59328933	59328934	rs1377164	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	18q21.33	LINC01544	rs1377164-T	0.2142	4E-20		0.0034	[0.0026-0.0042] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1037	chr18	59329495	59329496	rs4941038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.33	RP11-879F14.1	rs4941038-T	0.079175	6E-9		0.024162503	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1037	chr18	59330823	59330824	rs6567230	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.33	NR	rs6567230-T	0.700675	2E-11		0.0060735	[0.0043-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
1037	chr18	59330823	59330824	rs6567230	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.33	NR	rs6567230-T	0.700675	4E-8		0.00547351	[0.0035-0.0075] unit increase	Affymetrix [16582965] (imputed)	N
1037	chr18	59332216	59332217	rs57049475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q21.33	RP11-879F14.1	rs57049475-T	0.07951	2E-9		0.024657253	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1037	chr18	59340525	59340526	rs9945268	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	18q21.33	RNF152	rs9945268-A	0.7	3E-6	(EA)	0.0042	[0.0024-0.006] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1037	chr18	59342209	59342210	rs10871794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	18q21.33	NR	rs10871794-A	0.697264	6E-9		0.00703267	[0.0045-0.0095] unit increase	Affymetrix [16582621] (imputed)	N
1037	chr18	59342209	59342210	rs10871794	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	18q21.33	NR	rs10871794-A	0.697264	2E-6		0.00626193	[0.0036-0.0089] unit increase	Affymetrix [16582614] (imputed)	N
1037	chr18	59350506	59350507	rs12458009	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		18q21.33	RNF152	rs12458009-T	0.78	3E-8		0.0064	[0.004-0.0088] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1037	chr18	59354615	59354616	rs4940525	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18q21.33	LINC01544	rs4940525-T	0.2603	1E-16		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1037	chr18	59358378	59358379	rs7242701	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	18q21.33	RNF152	rs7242701-G	0.3173	4E-11		6.593	NR z score increase	Illumina [26237160] (imputed)	N
1037	chr18	59369104	59369105	rs1945483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q21.33		rs1945483-T	NR	4E-21		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1038	chr18	59379073	59379074	rs896642	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18q21.33	RNF152	rs896642-C	0.725	5E-9		0.458	[0.25-0.67] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1038	chr18	59448224	59448225	rs4941058	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	18q21.33	intergenic	rs4941058-C	NR	1E-6		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1039	chr18	59589186	59589187	rs1942981	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q21.33	PIGN	rs1942981-?	NR	3E-6	(uric acid)	0.23230319	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1039	chr18	59589202	59589203	rs181793400	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	18q21.33		rs181793400-T	0.0216	6E-6		1.41	[1.22-1.63]	Illumina [11796347] (imputed)	N
1041	chr18	59831462	59831463	rs190738498	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	18q21.33		rs190738498-A	NR	6E-8				Illumina [1084750]	N
1041	chr18	59838918	59838919	rs62096106	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	18q21.33	NR	rs62096106-G	NR	9E-6	(phenotype 1)	3.57	[NR]	Illumina [> 8000000] (imputed)	N
1041	chr18	59838918	59838919	rs62096106	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	18q21.33	NR	rs62096106-G	NR	9E-6	(phenotype 3)	3.57	[NR]	Illumina [> 8000000] (imputed)	N
1041	chr18	59896750	59896751	rs74952803	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q21.33	KIAA1468	rs74952803-C	0.1757	5E-6		0.0476	[0.027-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1042	chr18	60006977	60006978	rs8086340	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	18q21.33		rs8086340-?	NR	2E-9		1.06	[1.04-1.08]	Illumina [5170515] (imputed)	N
1042	chr18	60006977	60006978	rs8086340	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	18q21.33	NR	rs8086340-G	0.5355	3E-9		1.0363768	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
1042	chr18	60006977	60006978	rs8086340	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	18q21.33	NR	rs8086340-G	0.5355	7E-9		1.032418	[1.02-1.04]	Affymetrix [15688218] (imputed)	N
1042	chr18	60006977	60006978	rs8086340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	18q21.33		rs8086340-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	18q21.33		rs4574025-C	0.461	7E-14		1.33	[1.24-1.43]	Illumina [24006246] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	18q21.33	TNFRSF11A	rs4574025-T	0.54	2E-14		0.032	[0.024-0.04] unit decrease	NR [NR] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	18q21.33	TNFRSF11A	rs4574025-T	0.54	3E-14		0.032	[0.024-0.04] unit decrease	NR [7647814] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	18q21.33	NR	rs4574025-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	18q21.33	TNFRSF11A, KIAA1468, ZCCHC2	rs4574025-T	0.535	9E-9		1.09	[1.058-1.122]	Affymetrix [10894596] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	18q21.33	TNFRSF11A, KIAA1468, ZCCHC2	rs4574025-T	0.535	2E-10		0.871	[0.6-1.14] unit decrease	Affymetrix [10894596] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	18q21.33	TNFRSF11A	rs4574025-T	0.534	4E-9		1.062	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	18q21.33	TNFRSF11A	rs4574025-?	NR	8E-14		1.058	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	18q21.33	TNFRSF11A	rs4574025-T	0.56	7E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1042	chr18	60009813	60009814	rs4574025	26562150	Seldin MF	2015-10-10	Mol Med	Genome-wide Association Study of Late-Onset Myasthenia Gravis: Confirmation of TNFRSF11A, and Identification of ZBTB10 and Three Distinct HLA Associations.	Late-onset myasthenia gravis	532 European ancestry cases, 2,128 European ancestry controls	NA	18q21.33	TNFRSF11	rs4574025-C	0.47	4E-7		1.42	[1.24-1.63]	Illumina [6175472] (imputed)	N
1042	chr18	60010447	60010448	rs4369774	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	18q21.33		rs4369774-A	0.461	6E-19		1.45	[1.33-1.58]	Illumina [24006246] (imputed)	N
1042	chr18	60016232	60016233	rs4263037	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	18q21.33	TNFRSF11A	rs4263037-G	0.38	1E-8		1.26	[NR]	Illumina [8114394] (imputed)	N
1042	chr18	60021503	60021504	rs3826620	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	18q21.33	TNFRSF11A	rs3826620-G	0.71	1E-9				NR [> 9500000] (imputed)	N
1042	chr18	60021503	60021504	rs3826620	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	18q21.33	TNFRSF11A	rs3826620-G	0.711184	1E-9		1.0411626	1.02768230209461-1.05481972279216]	NR [9572556] (imputed)	N
1042	chr18	60028654	60028655	rs8083511	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	18q21.33	TNFRSF11A	rs8083511-C	0.1862	3E-10		1.205	[1.14-1.28]	Illumina [8966411] (imputed)	N
1043	chr18	60046203	60046204	rs12954567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	18q21.33	NR	rs12954567-T	NR	4E-9		0.0324	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1043	chr18	60052033	60052034	rs117028614	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	18q21.33		rs117028614-?	NR	3E-10		0.169187	[0.11-0.23] unit decrease	NR [9800000] (imputed)	N
1043	chr18	60052033	60052034	rs117028614	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.33	TNFRSF11A	rs117028614-A	0.99906	6E-10		0.179399	[0.12-0.24] unit decrease	NR [13737936] (imputed)	N
1043	chr18	60054856	60054857	rs884205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18q21.33		rs884205-C	NR	3E-65		0.0398	[0.035-0.044] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1043	chr18	60054856	60054857	rs884205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	18q21.33		rs884205-C	0.780905	2E-13		0.0346852	[0.025-0.044] unit decrease	Illumina [13474352] (imputed)	N
1043	chr18	60054856	60054857	rs884205	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	18q21.33	TNFRSF11A	rs884205-A	0.25	2E-47		14.5	z-score increase	Affymetrix [4311822] (imputed)	N
1043	chr18	60054856	60054857	rs884205	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	18q21.33	TNFRSF11A	rs884205-?		1E-13		0.0352	[0.026-0.044] unit decrease	Illumina [31500000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.33	TNFRSF11A	rs884205-A	0.2495	6E-38		0.0277399	[0.024-0.032] unit decrease	NR [13737936] (imputed)	N
1043	chr18	60054856	60054857	rs884205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.33		rs884205-?	NR	3E-27				NR [~ 8900000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.33		rs884205-?	NR	8E-30		0.0261596	[0.021-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	18q21.33	TNFRSF11A	rs884205-C	0.756	2E-14	(Tumor necrosis factor receptor superfamily member 11A, TNFRSF11A.8256.57.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	18q21.33	TNFRSF11A	rs884205-A	0.523571	2E-12		0.0643	[0.046-0.082] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	18q21.33	TNFRSF11A	rs884205-A	0.523571	6E-10		0.0501	[0.034-0.066] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	18q21.33	TNFRSF11A	rs884205-?	NR	5E-11		0.035	[0.025-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	18q21.33	NR	rs884205-A	0.2479	1E-8		0.072	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	18q21.33	NR	rs884205-A	0.2483	4E-13	(European)	0.053	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	18q21.33	NR	rs884205-A	0.2421	4E-15		0.0531	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q21.33	TNFRSF11A	rs884205-A	0.250016	3E-9	(women)	0.0294248	[0.019-0.04] unit decrease	NR [17166351] (imputed)	N
1043	chr18	60054856	60054857	rs884205	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q21.33	TNFRSF11A	rs884205-A	0.249016	1E-18		0.0331999	[0.026-0.041] unit decrease	NR [17166351] (imputed)	N
1043	chr18	60054856	60054857	rs884205	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q21.33	TNFRSF11A	rs884205-A	0.24787	1E-10	(men)	0.0373772	[0.026-0.049] unit decrease	NR [17166351] (imputed)	N
1043	chr18	60054856	60054857	rs884205	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	18q21.33	TNFRSF11A	rs884205-C	NR	2E-7	(EA)	0.1033	[0.064-0.143] unit increase	Illumina [~ 2500000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, skull)	7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	18q21.33	TNFRSF11A	rs884205-C	0.75	2E-8		0.104	[0.069-0.139] unit increase	Illumina [~ 2500000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	18q21.33	TNFRSF11A	rs884205-A	0.27	2E-17		0.05	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1043	chr18	60054856	60054857	rs884205	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	18q21.33	TNFRSF11A	rs884205-A	0.27	9E-9		0.08	[0.05-0.11] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
1043	chr18	60060734	60060735	rs2957128	20436471	Albagha OM	2010-05-02	Nat Genet	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	18q21.33	TNFRSF11A	rs2957128-A	0.38	2E-11		1.46	[1.30-1.63]	Illumina [294663]	N
1043	chr18	60066887	60066888	rs2957137	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	18q21.33	NR	rs2957137-A	0.3695	6E-14		0.0442	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1043	chr18	60080111	60080112	rs2980976	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	18q21.33	TNFRSF11A	rs2980976-A	0.168	3E-7	(Effect of Risperidone on CGI-S)			Affymetrix [492900]	N
1043	chr18	60082092	60082093	rs3018362	21623375	Albagha OM	2011-05-29	Nat Genet	Genome-wide association identifies three new susceptibility loci for Paget's disease of bone.	Paget's disease	741 European ancestry cases, 2,699 European ancestry controls	1,474 European ancestry cases, 1,671 European ancestry controls	18q21.33	TNFRSF11A	rs3018362-A	0.36	8E-21		1.45	[1.34-1.56]	Illumina [2487078] (imputed)	N
1043	chr18	60082092	60082093	rs3018362	20436471	Albagha OM	2010-05-02	Nat Genet	Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget's disease of bone.	Paget's disease	692 European ancestry cases, 1,001 European ancestry controls	256 European ancestry cases, 488 European ancestry controls	18q21.33	TNFRSF11A	rs3018362-A	0.34	5E-13		1.52	[1.36-1.70]	Illumina [294663]	N
1043	chr18	60082092	60082093	rs3018362	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (hip)	5,861 European ancestry individuals	7,925 European ancestry individuals	18q21.33	RANK	rs3018362-A	0.35	1E-6		0.07	[0.04-0.10] s.d. decrease	Illumina [301019]	N
1043	chr18	60094991	60094992	rs6567282	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q21.33	TNFRSF11A	rs6567282-T	0.395	4E-11	(TNFRSF11A, 8256_57_3)	0.16673234	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1043	chr18	60096199	60096200	rs1618130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	18q21.33	NR	rs1618130-C	NR	6E-10		0.0314	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1043	chr18	60098544	60098545	rs4439854	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF11A	5,367 Icelandic ancestry individuals	NA	18q21.33		rs4439854-T	0.4988	6E-16		0.146877	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1043	chr18	60104588	60104589	rs12962662	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs12962662-T	NR	3E-14		0.0263	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1043	chr18	60109158	60109159	rs12953454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q21.33	ACTBP9	rs12953454-T	NR	1E-8		0.0185053	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1043	chr18	60109158	60109159	rs12953454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	18q21.33	ACTBP9	rs12953454-T	NR	2E-9		0.0193469	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1043	chr18	60123140	60123141	rs7231404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.33	NR	rs7231404-G	0.305123	2E-11		0.016083468	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr18	60123140	60123141	rs7231404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.33		rs7231404-G	0.305139	3E-11		0.016087659	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr18	60123140	60123141	rs7231404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.33		rs7231404-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1043	chr18	60123814	60123814	rs3083275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q21.33		rs3083275-CAG	0.278529	4E-9		0.014750261	[0.0099-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
1043	chr18	60126111	60126112	rs694419	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	18q21.33	TNFRSF11A, ZCCHC2	rs694419-T	0.52	4E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1043	chr18	60126111	60126112	rs694419	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	18q21.33	TNFRSF11A, ZCCHC2	rs694419-T	0.52	1E-8	(EA)	0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1043	chr18	60140575	60140576	rs620068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.33	NR	rs620068-A	0.45882100000000003	8E-10		0.00511019	[0.0035-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
1043	chr18	60154315	60154316	rs17667515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	18q21.33		rs17667515-A	NR	4E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1044	chr18	60162790	60162791	rs4941139	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	18q21.33	Intergenic	rs4941139-C	NR	2E-10		0.0093	[0.0064-0.0122] unit increase	Affymetrix [9304965] (imputed)	N
1044	chr18	60163024	60163025	rs1108167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs1108167-G	0.273388	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1044	chr18	60163024	60163025	rs1108167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.33	NR	rs1108167-G	0.284049	1E-13		0.015852	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1044	chr18	60165635	60165636	rs34170196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q21.33	ZCCHC2	rs34170196-T	NR	5E-10		0.0211484	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1044	chr18	60165635	60165636	rs34170196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	18q21.33	ZCCHC2	rs34170196-T	NR	2E-8		0.019245	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1044	chr18	60166259	60166260	rs17729447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.33	NR	rs17729447-C	0.282834	3E-11		0.01366	[0.0096-0.0177] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1044	chr18	60203139	60203140	rs35331358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	18q21.33		rs35331358-A	NR	7E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1044	chr18	60203854	60203855	rs34284056	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	18q21.33		rs34284056-C	0.725234	2E-9		0.0278339	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1044	chr18	60203854	60203855	rs34284056	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	18q21.33	NR	rs34284056-C	0.723316	3E-10		0.014644	[0.01-0.019] unit increase	NR [NR]	N
1044	chr18	60205541	60205542	rs17070072	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	18q21.33	ZCCHC2	rs17070072-A	0.3437	2E-8		0.07339185	NR unit decrease	Illumina [560351]	N
1044	chr18	60205541	60205542	rs17070072	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	18q21.33	ZCCHC2	rs17070072-A	0.3437	1E-8		0.0820149	NR unit decrease	Illumina [560351]	N
1044	chr18	60206799	60206800	rs55722786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	18q21.33		rs55722786-T	NR	8E-25		0.0282	[0.023-0.033] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1044	chr18	60206799	60206800	rs55722786	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	18q21.33	NR	rs55722786-T	0.2847	8E-9		0.001411	[0.00092-0.00191] unit increase	Affymetrix [NR] (imputed)	N
1044	chr18	60218333	60218334	rs6567288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q21.33		rs6567288-A	0.5719	3E-8		0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1044	chr18	60218333	60218334	rs6567288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q21.33	Intergenic	rs6567288-A	0.5719	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1044	chr18	60223016	60223017	rs12172847	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q21.33	ZCCHC2	rs12172847-A	0.3245	1E-10		0.1184	[0.082-0.155] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1044	chr18	60237404	60237405	rs200296776	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	18q21.33	ZCCHC2	rs200296776-C	0.99	2E-8				Illumina [at least 532488] (imputed)	N
1044	chr18	60237404	60237405	rs200296776	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	18q21.33	ZCCHC2	rs200296776-C	0.99	1E-8	(japanese)	1.15	[0.76-1.54] year increase	Illumina [at least 532488] (imputed)	N
1044	chr18	60238667	60238668	rs56076457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	18q21.33		rs56076457-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1044	chr18	60240351	60240352	rs11152350	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q21.33		rs11152350-A	0.4704	1E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1044	chr18	60240351	60240352	rs11152350	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	18q21.33	ZCCHC2	rs11152350-C	0.5329999999999999	1E-13		1.0288066		Affymetrix [11880941] (imputed)	N
1044	chr18	60240351	60240352	rs11152350	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q21.33	ZCCHC2	rs11152350-C	0.5329999999999999	1E-13		1.0284985		Affymetrix [11880941] (imputed)	N
1044	chr18	60243875	60243876	rs11557713	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	18q21.33	ZCCHC2	rs11557713-A	NR	1E-8		1.069	[1.045-1.094]	Illumina [3742365] (imputed)	N
1044	chr18	60243875	60243876	rs11557713	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	18q21.33	ZCCHC2	rs11557713-A	0.285	4E-8		1.0694	[1.05-1.09]	NR [9372253] (imputed)	N
1044	chr18	60246153	60246154	rs4941144	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	18q21.33	NR	rs4941144-?	NR	3E-6				Illumina [7427422] (imputed)	N
1044	chr18	60246968	60246969	rs36008763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	18q21.33		rs36008763-G	NR	1E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1044	chr18	60269355	60269356	rs9807759	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	18q21.33	ZCCHC2	rs9807759-?	NR	1E-6		0.401	[0.24-0.56] unit decrease	Illumina [6590000] (imputed)	N
1044	chr18	60280096	60280097	rs595286	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	18q21.33	ZCCHC2	rs595286-G	0.4679	2E-6		2.964	[NR] unit decrease	Illumina [4827900] (imputed)	N
1045	chr18	60321602	60321603	rs172586	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	18q21.33	intergenic	rs172586-A	0.02	8E-10	(YKL-40)	46.598	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1045	chr18	60375694	60375695	rs35026592	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	18q21.33	NR	rs35026592-?	NR	8E-6		0.010441	[0.0059-0.015] unit increase	Affymetrix [9658292] (imputed)	N
1045	chr18	60420871	60420872	rs139722318	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	18q21.33	PHLPP1	rs139722318-A	0.9977	2E-7		2.1049	[1.32-2.89] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1046	chr18	60479327	60479328	rs116869322	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	18q21.33	NR	rs116869322-T	NR	3E-6	(female)	0.2983	[0.17-0.42] unit decrease	Illumina [11133794] (imputed)	N
1046	chr18	60525391	60525392	rs692916	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	18q21.33	PHLPP1	rs692916-T		9E-6		1.492	[0.84-2.15] unit increase	Illumina [7576458] (imputed)	N
1046	chr18	60548876	60548877	rs599881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.33	PHLPP1	rs599881-G	0.583342	1E-12		0.016360648	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr18	60668269	60668270	rs10469140	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.33	BCL2A	rs10469140-G	0.4849	7E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1047	chr18	60683114	60683115	rs8095193	26534935	Weng L	2015-11-03	Physiol Genomics	Genetic loci associated with nonobstructive coronary artery disease in Caucasian women.	Nonobstructive coronary artery disease	332 European ancestry female cases, 1,003 European ancestry female controls	NA	18q21.33	intergenic	rs8095193-A	0.222	7E-6		1.6	[1.30-1.96]	Illumina [52371]	N
1048	chr18	60723786	60723787	rs1031670	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.33	NA	rs1031670-T	0.5169	1E-10		0.0111	[0.0078-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
1048	chr18	60737479	60737480	rs9675998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.33	NR	rs9675998-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1048	chr18	60739249	60739250	rs9951893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.33		rs9951893-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1048	chr18	60779017	60779018	rs9956301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs9956301-G	NR	2E-11		0.0294	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1048	chr18	60779017	60779018	rs9956301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs9956301-G	NR	5E-16		0.0356	[0.027-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1048	chr18	60780198	60780199	rs8098694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q21.33		rs8098694-A	0.441159	4E-10		0.014313151	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr18	60783210	60783211	rs17749561	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	18q21.33	BCL2	rs17749561-G	0.91	8E-10		1.34	[1.22-1.47]	Illumina [up to 21554489]	N
1048	chr18	60788558	60788559	rs8086644	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18q21.33	NR	rs8086644-A	0.1718	6E-6		0.0111	[0.0064-0.0158] unit increase	NR [~ 27400000] (imputed)	N
1048	chr18	60788744	60788745	rs77551289	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	18q21.33		rs77551289-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1048	chr18	60788744	60788745	rs77551289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q21.33	BCL2	rs77551289-G	0.097654	1E-12		0.026519917	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr18	60788744	60788745	rs77551289	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	18q21.33	BCL2	rs77551289-A	NR	2E-11		1.37	[1.25-1.5]	Affymetrix, Illumina [> 10000000] (imputed)	N
1048	chr18	60793493	60793494	rs4987856	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	18q21.33	BCL2	rs4987856-C	0.906	4E-11		1.4492754	[1.3-1.61]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1048	chr18	60793548	60793549	rs4987855	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.33	NR	rs4987855-C	0.902541	1E-11		0.00892831	[0.0061-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
1048	chr18	60793548	60793549	rs4987855	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.33	NR	rs4987855-C	0.902541	4E-6		0.00648437	[0.0034-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1048	chr18	60793548	60793549	rs4987855	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.33	BCL2	rs4987855-G	0.91	3E-12		1.47	[1.32-1.61]	Illumina [549934]	N
1048	chr18	60793920	60793921	rs4987852	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	18q21.33	BCL2	rs4987852-?	NR	8E-11		1.41	[NR]	Illumina [549934]	N
1048	chr18	60795187	60795188	rs4987845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18q21.33		rs4987845-T	NR	3E-12		0.0264	[0.019-0.034] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1048	chr18	60803871	60803872	rs56087288	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.33	BCL2	rs56087288-G	0.692488	5E-12		0.0140312	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
1048	chr18	60803871	60803872	rs56087288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.33		rs56087288-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1048	chr18	60804722	60804723	rs72941346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q21.33		rs72941346-G	NR	3E-14		0.0338	[0.025-0.042] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1048	chr18	60809782	60809783	rs17756073	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.33		rs17756073-?	NR	1E-11		0.0145281	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1049	chr18	60825828	60825829	rs4940571	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs4940571-G	NR	1E-12		0.0302	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	18q21.33		rs4940572-A	NR	1E-41		0.0357	[0.031-0.041] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	18q21.33		rs4940572-A	0.511489	5E-17		0.0315362	[0.024-0.039] unit increase	Illumina [13477433] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs4940572-A	0.133531	2E-10		0.020808578	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q21.33	BCL2	rs4940572-A	0.133546	7E-15		0.025455425	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	18q21.33	BCL2	rs4940572-?	NR	9E-30		0.05096	[0.042-0.06] unit increase novel	Illumina [6108953] (imputed)	N
1049	chr18	60826342	60826343	rs4940572	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	18q21.33	BCL2	rs4940572-?	NR	1E-26		0.04806	[0.039-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
1049	chr18	60826466	60826467	rs17070750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs17070750-G	NR	7E-14		0.0471	[0.035-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr18	60826466	60826467	rs17070750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs17070750-G	NR	5E-21		0.0592	[0.047-0.072] unit increase	Affymetrix [9000000] (imputed)	N
1049	chr18	60830031	60830032	rs59532114	31465739	Liu M	2019-08-26	J Invest Dermatol	A GENETIC VARIANT IN THE BCL2 GENE ASSOCIATES WITH ADALIMUMAB RESPONSE IN HIDRADENITIS SUPPURATIVA CLINICAL TRIALS AND REGULATES EXPRESSION OF BCL2.	Response to adalimumab in hidradenitis suppurativa (abscess and inflammatory nodule count increase)	307 European ancestry individuals	NR	18q21.33	BCL2	rs59532114-A	0.04	2E-8				Illumina [6949858] (imputed)	N
1049	chr18	60835169	60835170	rs8094630	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	18q21.33	BCL2	rs8094630-?	NR	2E-14		0.03586	[0.027-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1049	chr18	60837507	60837508	rs66836460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs66836460-A	0.136432	8E-12		0.02210246	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60844305	60844306	rs6567329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.33	BCL2	rs6567329-T	0.147347	4E-12		0.022385683	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60844722	60844723	rs4987802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.33	BCL2	rs4987802-G	0.147796	6E-10		0.019848358	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60845290	60845291	rs4940575	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q21.33	NR	rs4940575-C	0.1666	4E-6	(EA)	0.04	[0.023-0.057] unit increase	Illumina [~ 11800000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	18q21.33		rs12454712-?	NR	5E-8		0.00513453	[0.0033-0.007] unit increase	NR [NR]	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q21.33		rs12454712-C	NR	1E-19		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	18q21.33		rs12454712-C	0.519768	9E-11		0.0179316	[0.013-0.023] unit increase	Illumina [13479924] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	18q21.33		rs12454712-C	0.523515155	1E-10		0.060281757	[0.042-0.079] unit decrease	Illumina [13429769] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	18q21.33		rs12454712-C	NR	1E-13		0.0472	[0.035-0.06] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	18q21.33		rs12454712-C	0.519721205	1E-8		0.057367772	[0.038-0.077] unit decrease	Illumina [13134967] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	18q21.33		rs12454712-C	NR	1E-11		0.0523	[0.037-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q21.33		rs12454712-C	NR	9E-15		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	18q21.33		rs12454712-C	NR	1E-13		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	18q21.33	BCL2	rs12454712-?	NR	1E-11		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [21347608] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	18q21.33	BCL2	rs12454712-?	NR	2E-22		0.0042	[0.0032-0.0052] unit decrease	Affymetrix [21347608] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	18q21.33	BCL2	rs12454712-T	0.575	7E-8		0.0478	[0.03-0.066] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	18q21.33	BCL2	rs12454712-T	0.5804	2E-9		0.0142	[0.0093-0.0191] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.33	BCL2	rs12454712-C	NR	1E-24		0.0299432	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q21.33	BCL2	rs12454712-C	NR	5E-25		0.0301484	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	18q21.33	BCL2	rs12454712-C	NR	1E-13		0.0217593	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	18q21.33	BCL2	rs12454712-C	NR	2E-10		0.0193621	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	18q21.33	BCL2	rs12454712-C	NR	1E-14		0.0227304	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	18q21.33	BCL2	rs12454712-C	0.3857	3E-8				Affymetrix, Illumina [2331072] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	18q21.33	BCL2	rs12454712-C	0.3857	1E-9				Affymetrix, Illumina [2331072] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting insulin (pairwise)	374,012 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	18q21.33	BCL2	rs12454712-C	0.3857	1E-8				Affymetrix, Illumina [2331072] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	18q21.33	BCL2	rs12454712-T	0.62	5E-13		7.22	z-score increase	Affymetrix [4312306] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	18q21.33	NR	rs12454712-C	NR	9E-13		0.0184	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	18q21.33	NR	rs12454712-C	NR	4E-14		0.0187	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	18q21.33	NR	rs12454712-C	NR	3E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	18q21.33	NR	rs12454712-C	NR	4E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q21.33	BCL2	rs12454712-C	0.376723	2E-12		0.016241278	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	18q21.33	BCL2	rs12454712-C	0.376691	2E-15		0.018356616	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q21.33	BCL2	rs12454712-C	0.376625	1E-10		0.01487564	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q21.33	BCL2	rs12454712-C	0.376596	4E-13		0.01670783	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	18q21.33	NR	rs12454712-C	0.5195	3E-12		0.061	[0.044-0.078] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q21.33	NR	rs12454712-C	0.3831	8E-18		0.0412	[0.032-0.051] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q21.33	NR	rs12454712-C	0.4059	2E-27		0.0424	[0.035-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	18q21.33		rs12454712-C	0.522754069	1E-12		0.9430086	[0.927830168-0.958435389]	Illumina [8919992] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	18q21.33	BCL2A	rs12454712-T	0.512	1E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q21.33	BCL2	rs12454712-T	0.623174	1E-8		0.00811303	[0.0053-0.0109] unit decrease	Affymetrix [12370749]	N
1049	chr18	60845883	60845884	rs12454712	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q21.33	BCL2	rs12454712-T	0.623201	2E-9		0.0124259	[0.0084-0.0165] unit increase	Affymetrix [NR] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.33	NR	rs12454712-C	0.376613	1E-32		0.00988478	[0.0082-0.0116] unit increase	Affymetrix [16582909] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	18q21.33	NR	rs12454712-C	0.37639199999999995	3E-18		0.0103774	[0.0079-0.0129] unit increase	Affymetrix [16585854] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	18q21.33	NR	rs12454712-C	0.376814	1E-13		0.00847051	[0.0061-0.0108] unit increase	Affymetrix [16582621] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.33	NR	rs12454712-C	0.376613	1E-15		0.0072025	[0.0053-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	18q21.33	NR	rs12454712-C	0.37639199999999995	8E-9		0.00792421	[0.005-0.0108] unit increase	Affymetrix [16585866] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	18q21.33	NR	rs12454712-C	0.376814	8E-8		0.00626191	[0.0038-0.0088] unit increase	Affymetrix [16582614] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.33	NR	rs12454712-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.33	NR	rs12454712-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	18q21.33	BCL2A	rs12454712-T	0.48	3E-12		1.06	1.05-1.08	Illumina [12557761] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	18q21.33		rs12454712-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q21.33		rs12454712-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q21.33	BCL2	rs12454712-T	0.6364	7E-10		0.1747	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	18q21.33	BCL2A	rs12454712-T	0.6142	5E-13		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	18q21.33	BCL2	rs12454712-T	0.6503	2E-8		0.0128	[0.0083-0.0173] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	18q21.33	NR	rs12454712-T	0.6243	1E-20		0.017	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q21.33	NA	rs12454712-T	0.6245	1E-14		0.0136	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q21.33	NA	rs12454712-T	0.6245	1E-14		0.0136	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	18q21.33	BCL2	rs12454712-T	0.6225	4E-15		0.2038	[0.15-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	18q21.33	NR	rs12454712-T	NR	4E-7		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q21.33	BCL2	rs12454712-C	0.4	3E-11		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	18q21.33	BCL2	rs12454712-C	0.3857	4E-8		0.048	[0.03-0.066] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	18q21.33	BCL2	rs12454712-T	0.6153	7E-6	(women)	0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	18q21.33	BCL2	rs12454712-C	0.3778	5E-11		0.02441739	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	18q21.33	BCL2	rs12454712-C	0.3778	5E-10		0.02299066	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (model adjusted for BMI)	16,753 European ancestry individuals	13,354 European ancestry individuals	18q21.33	BCL2	rs12454712-T	0.58	2E-8		0.05	[0.030-0.070] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	18q21.33	BCL2	rs12454712-T	0.58	3E-8		0.00336	[-0.00081-0.00753] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	18q21.33	NR	rs12454712-T	0.605780269266481	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q21.33	BCL2	rs12454712-C	0.397	6E-6		0.017	[0.0095-0.0241] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1049	chr18	60845883	60845884	rs12454712	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.33	BCL2	rs12454712-T	0.6149	3E-9	(women)	0.0329	[0.022-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1049	chr18	60845883	60845884	rs12454712	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	18q21.33	BCL2	rs12454712-T	0.6089	1E-9	(EA, women)	0.0347	[0.024-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1049	chr18	60846429	60846430	rs74625348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.33	BCL2	rs74625348-C	NR	4E-12		0.0236106	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60846429	60846430	rs74625348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q21.33	BCL2	rs74625348-C	NR	4E-12		0.0236464	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60846655	60846656	rs80030866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	18q21.33	NR	rs80030866-C	NR	5E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr18	60848638	60848639	rs4940576	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	18q21.33	BCL2	rs4940576-C	0.77	2E-8		5.64	z-score increase	Affymetrix [4314223] (imputed)	N
1049	chr18	60848638	60848639	rs4940576	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	18q21.33	NR	rs4940576-T	0.399	2E-9		1.35	[1.22-1.48]	Affymetrix [435183]	N
1049	chr18	60848638	60848639	rs4940576	26394188	Zhu Z	2015-09-22	Nat Commun	Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls.	Adolescent idiopathic scoliosis	960 Han Chinese ancestry cases, 1,499 Han Chinese ancestry controls	3,316 Han Chinese ancestry cases,  4,516 Han Chinese ancestry controls	18q21.33	BCL-2	rs4940576-T	0.387	2E-12		1.23	[1.14-1.29]	Affymetrix [516220]	N
1049	chr18	60853254	60853255	rs117997962	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.33	NR	rs117997962-G	0.0215778	2E-10		0.0675203	[0.047-0.088] unit decrease	NR [19129689] (imputed)	N
1049	chr18	60859320	60859321	rs899967	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	18q21.33	BCL2	rs899967-C	NR	7E-6	(Continuous Variable)	0.04	[0.02-0.05] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1049	chr18	60859973	60859974	rs9944895	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	18q21.33		rs9944895-?	NR	1E-15		0.07	[0.054-0.086] unit increase	Affymetrix, Illumina [10661418] (imputed)	N
1049	chr18	60859973	60859974	rs9944895	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	18q21.33		rs9944895-?	NR	8E-13		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1049	chr18	60860245	60860246	rs12457700	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	18q21.33		rs12457700-?	NR	4E-12		6.94	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1049	chr18	60860245	60860246	rs12457700	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	18q21.33		rs12457700-?	NR	5E-12		6.91	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1049	chr18	60873081	60873082	rs2062010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	18q21.33		rs2062010-T	NR	3E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1049	chr18	60873081	60873082	rs2062010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs2062010-T	0.229268	5E-20		0.024290457	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60873081	60873082	rs2062010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.33	BCL2	rs2062010-T	0.229245	3E-19		0.023780536	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60874842	60874843	rs67443441	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q21.33	NR	rs67443441-?	NR	4E-8				Illumina [7760689] (imputed)	N
1049	chr18	60877734	60877735	rs4987786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q21.33	BCL2	rs4987786-G	NR	3E-8		0.026731	[0.017-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60877734	60877735	rs4987786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q21.33	BCL2	rs4987786-G	NR	3E-8		0.0266743	[0.017-0.036] unit decrease	Affymetrix [319769] (imputed)	N
1049	chr18	60878882	60878883	rs9955190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	18q21.33	NR	rs9955190-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1049	chr18	60878882	60878883	rs9955190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q21.33	NR	rs9955190-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1049	chr18	60880700	60880701	rs187971642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs187971642-C	0.00629100000000005	1E-9		0.088177435	[0.06-0.116] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60880700	60880701	rs187971642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q21.33	BCL2	rs187971642-C	0.00629100000000005	2E-14		0.1109966	[0.083-0.139] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60880700	60880701	rs187971642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs187971642-T	0.994143	8E-19				Affymetrix, Illumina [23472807] (imputed)	N
1049	chr18	60880700	60880701	rs187971642	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	18q21.33	NR	rs187971642-T	0.993984	1E-21		0.12166	[0.097-0.147] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1049	chr18	60880700	60880701	rs187971642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	18q21.33	BCL2	rs187971642-C	0.0063	2E-10		0.152082	[0.11-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60882131	60882132	rs144596877	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs144596877-G	0.990792	5E-9		0.249395	[0.16-0.34] increase	Affymetrix [11014269] (imputed)	N
1049	chr18	60895981	60895982	rs6567331	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6567331-G	0.274341	2E-11		0.0667125	[0.047-0.087] decrease	Affymetrix [11014269] (imputed)	N
1049	chr18	60896693	60896694	rs11877925	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	18q21.33		rs11877925-?	NR	7E-9		0.06	[0.04-0.08] unit decrease	Affymetrix [9906178] (imputed)	N
1049	chr18	60902327	60902328	rs954954	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	18q21.33		rs954954-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1049	chr18	60902327	60902328	rs954954	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.33	BCL2	rs954954-C	0.104941	9E-23		0.03572182	[0.029-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60903968	60903969	rs3826622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	18q21.33		rs3826622-T	0.13632	1E-8		0.0368801	[0.024-0.05] unit decrease	Illumina [13470073] (imputed)	N
1049	chr18	60903977	60903978	rs3810027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q21.33		rs3810027-G	NR	2E-9		0.0128	[0.0087-0.0169] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1049	chr18	60906683	60906684	rs11152375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs11152375-T	0.788452	2E-20		0.025363525	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60906683	60906684	rs11152375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.33	BCL2	rs11152375-C	0.211532	1E-29		0.030907093	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60912627	60912627	rs34385891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q21.33	NR	rs34385891-AT	0.570505	3E-17		0.00733198	[0.0057-0.009] unit increase	Affymetrix [16582909] (imputed)	N
1049	chr18	60912627	60912627	rs34385891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	18q21.33	NR	rs34385891-AT	0.570821	5E-13		0.0088426	[0.0064-0.0113] unit increase	Affymetrix [16585854] (imputed)	N
1049	chr18	60912627	60912627	rs34385891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q21.33	NR	rs34385891-AT	0.570505	9E-13		0.00680717	[0.0049-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
1049	chr18	60912627	60912627	rs34385891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	18q21.33	NR	rs34385891-AT	0.570821	1E-8		0.00791569	[0.0051-0.0107] unit increase	Affymetrix [16585866] (imputed)	N
1049	chr18	60914433	60914434	rs879294742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q21.33	BCL2	rs879294742-A	0.349917	4E-10		0.01620649	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60915583	60915584	rs9967405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs9967405-G	0.072291	6E-9		0.024940716	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60917123	60917124	rs8086404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs8086404-C	0.825554	6E-22		0.028212655	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	2E-16		0.0579	[0.044-0.072] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	6E-27		0.0647	[0.053-0.076] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	5E-15		0.0534	[0.04-0.067] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	3E-9		0.0415	[0.028-0.055] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	9E-44		0.0947	[0.081-0.108] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	4E-38		0.0902	[0.076-0.104] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	2E-40		0.0928	[0.079-0.107] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	1E-46		0.0744	[0.064-0.085] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	18q21.33		rs17758695-T	NR	3E-15		0.0468	[0.035-0.058] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	18q21.33		rs17758695-C	0.971	1E-15				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	18q21.33		rs17758695-C	0.971	2E-9				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	18q21.33		rs17758695-C	0.971	6E-26				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	18q21.33		rs17758695-C	0.971	7E-13				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	18q21.33		rs17758695-C	0.971	2E-26				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	18q21.33		rs17758695-C	0.971	3E-17				Affymetrix [10369434] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029416	4E-21		0.061715018	[0.049-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029417	1E-36		0.082724154	[0.07-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029639	4E-76		0.12296316	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029652	4E-25		0.06898938	[0.056-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029435	3E-10		0.041122634	[0.028-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.0294219999999999	1E-28		0.07345633	[0.06-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029424	4E-67		0.114378944	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029415	1E-31		0.07763099	[0.065-0.091] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029436	1E-43		0.092327505	[0.079-0.105] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029647	4E-35		0.08198295	[0.069-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029435	3E-48		0.102821	[0.091-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029435	1E-51		0.09888882	[0.086-0.112] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029413	2E-66		0.11336863	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029422	1E-85		0.12904958	[0.12-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029429	1E-39		0.08673364	[0.074-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	18q21.33	BCL2	rs17758695-T	0.029431	2E-57		0.10513992	[0.092-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0276908	9E-20				Affymetrix, Illumina [24649327] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028609	2E-22		0.055946	[0.045-0.067] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0276925	4E-47				Affymetrix, Illumina [24332387] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028632	4E-51		0.085857	[0.075-0.097] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0277934	4E-27				Affymetrix, Illumina [24588908] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028749	1E-28		0.063292	[0.052-0.074] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028781	4E-10		0.036835	[0.025-0.048] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0278373	1E-76				Affymetrix, Illumina [23467995] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028765	4E-80		0.109272	[0.098-0.121] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-C	0.971363	2E-40				Affymetrix, Illumina [17210439] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q21.33	NR	rs17758695-C	0.970358	5E-44		0.080001	[0.069-0.091] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0277005	2E-70				Affymetrix, Illumina [24246363] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.028642	1E-74		0.102654	[0.092-0.114] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0286288	1E-70				Affymetrix, Illumina [20825802] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.02957	4E-75		0.106107	[0.095-0.117] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0286272	9E-91				Affymetrix, Illumina [19872809] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.029555	1E-93		0.122123	[0.11-0.13] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.0286218	1E-88				Affymetrix, Illumina [19905671] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	18q21.33	NR	rs17758695-T	0.029551	1E-91		0.124742	[0.11-0.14] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	18q21.33	BCL2	rs17758695-?	NR	1E-33				NR [NR]	N
1049	chr18	60920853	60920854	rs17758695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q21.33		rs17758695-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	18q21.33		rs17758695-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q21.33		rs17758695-?	NR	3E-70				NR [~ 8900000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.33		rs17758695-?	NR	4E-80				NR [~ 8900000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	18q21.33	BCL2	rs17758695-C	0.97	1E-33		0.01	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	1E-51		0.1562393	[0.14-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	3E-37		0.1344709	[0.11-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	1E-18		0.09246756	[0.072-0.113] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0303	9E-31		0.1239407	[0.1-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0302	1E-10		0.06906938	[0.048-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	4E-27		0.113979	[0.093-0.135] unit increase	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	7E-13		0.07556674	[0.055-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	3E-20		0.09716379	[0.076-0.118] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0303	8E-14		0.07937635	[0.059-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	8E-21		0.09760817	[0.077-0.118] unit increase	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	9E-25		0.1073979	[0.087-0.128] unit increase	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	2E-20		0.09726427	[0.077-0.118] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	1E-18		0.09308597	[0.072-0.114] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.03	7E-25		0.1084903	[0.088-0.129] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	1E-46		0.1471761	[0.13-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60920853	60920854	rs17758695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	18q21.33	BCL2	rs17758695-T	0.0299	2E-40		0.1378663	[0.12-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1049	chr18	60924969	60924970	rs7226979	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA	18q21.33	BCL2	rs7226979-C	0.43	7E-11		1.21	[1.14-1.28]	Affymetrix [536506]	N
1049	chr18	60924969	60924970	rs7226979	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		18q21.33	BCL2	rs7226979-T	NR	3E-9		0.0377246	NR unit increase	NR [NR] (imputed)	N
1049	chr18	60926160	60926161	rs12457893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	18q21.33		rs12457893-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1049	chr18	60926160	60926161	rs12457893	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	18q21.33	NR	rs12457893-C	0.454682	3E-29		0.0352744	[0.029-0.041] unit increase	NR [19129689] (imputed)	N
1049	chr18	60929064	60929065	rs8089784	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	18q21.33	NR	rs8089784-G	NR	9E-6	(random effect)	1.1904762	NR	NR [6904914] (imputed)	N
1049	chr18	60931094	60931095	rs2187163	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q21.33	BCL2	rs2187163-G	NR	4E-7		1.0793	NR	Affymetrix, Illumina [8278136] (imputed)	N
1049	chr18	60947110	60947111	rs7236090	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q21.33	BCL2	rs7236090-T	0.44302	4E-14		0.0141786	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1049	chr18	60947110	60947111	rs7236090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q21.33		rs7236090-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1050	chr18	60950714	60950714	rs779566246	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q21.33		rs779566246-?	NR	1E-19		0.0200565	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q21.33		rs4987719-T	NR	6E-9		0.0313	[0.021-0.042] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q21.33	NR	rs4987719-T	NR	2E-9		0.04	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q21.33	NR	rs4987719-T	NR	1E-9		0.0407	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	18q21.33	NR	rs4987719-C	NR	9E-7		0.01868	[0.011-0.026] unit decrease	NR [11010159] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	18q21.33	NR	rs4987719-C	NR	4E-8		0.0162248	[0.011-0.022] unit decrease	NR [11010159] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	18q21.33	NR	rs4987719-C	NR	1E-7	(adjusted for BMI)	0.01536	[0.0098-0.021] unit decrease	NR [11010159] (imputed)	N
1050	chr18	60960309	60960310	rs4987719	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	18q21.33	NR	rs4987719-T	0.0338	4E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [10862568] (imputed)	N
1050	chr18	60961193	60961193	rs533722308	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	18q21.33	NR	rs533722308-CT	NR	4E-10		1.051	[1.03-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1050	chr18	60961193	60961193	rs533722308	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q21.33	BCL2	rs533722308-CT	0.42	1E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1050	chr18	60979533	60979534	rs35593106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q21.33	BCL2	rs35593106-A	0.429713	2E-9		0.013585112	[0.0092-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr18	60990021	60990022	rs2551402	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 polyunsaturated fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	18q21.33	BCL2	rs2551402-C	0.456	6E-6		0.664	unit increase	Illumina [621723]	N
1050	chr18	60991916	60991917	rs11660715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q21.33	BCL2	rs11660715-T	0.429637	3E-10		0.01416042	[0.0097-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr18	60994120	60994121	rs139419907	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18q21.33	NR	rs139419907-?	NR	3E-6	(Japanese)	0.762	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1050	chr18	61002651	61002652	rs61758854	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	18q21.33		rs61758854-?	NR	8E-6		1.324	[1.2-1.45]	NR [674885]	N
1050	chr18	61012360	61012361	rs12953721	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	18q21.33		rs12953721-?	NR	6E-6		0.923432	[0.89-0.96]	NR [680312]	N
1051	chr18	61145706	61145707	rs79285331	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q21.33	NR	rs79285331-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1051	chr18	61176265	61176266	rs2032224	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)	119 Japanese ancestry cases, 105 Japanese ancestry controls	NA	18q21.33	SERPINB5	rs2032224-A	0.62	9E-6	(Recessive)	2.16	[1.42-3.27]	Illumina [555600]	N
1051	chr18	61182099	61182102	rs201970744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	18q21.33		rs201970744-A	0.71636	7E-22		0.024246212	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1051	chr18	61183023	61183024	rs12958051	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	18q21.33		rs12958051-C	0.269	2E-9				Affymetrix [10369434] (imputed)	N
1051	chr18	61202254	61202255	rs17770334	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	18q21.33	SERP1NB3/4/5J7J11J13, BCL2, VPS4B, KDSR	rs17770334-C	NR	2E-6		3.1	[1.90-4.80]	Illumina [2017629] (imputed)	N
1052	chr18	61247646	61247647	rs9949291	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	18q21.33	intergenic	rs9949291-G	0.7127	6E-11		0.02604607	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1052	chr18	61251972	61251973	rs12968338	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	18q21.33	SERPINB13	rs12968338-T	0.7117	1E-9		0.02425462	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1052	chr18	61251972	61251973	rs12968338	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	18q21.33	SERPINB13	rs12968338-T	0.7118	9E-11		0.02573811	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1052	chr18	61253489	61253490	rs12960235	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	18q21.33	SERPINB13	rs12960235-G	0.7454	2E-9		0.02517173	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1052	chr18	61254525	61254525	rs3216123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q21.33	SERPINB13	rs3216123-AT	0.726463	3E-26		0.026584176	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1052	chr18	61255440	61255441	rs715351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q21.33		rs715351-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1052	chr18	61267506	61267507	rs6567380	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	18q21.33	NR	rs6567380-T	0.0225261	2E-6		1.137	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1052	chr18	61331609	61331610	rs3867263	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	18q21.33		rs3867263-?	NR	4E-6	(serous_hg)	1.25		Illumina [11595112] (imputed)	N
1053	chr18	61366206	61366207	rs2037511	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	18q21.33		rs2037511-?	NR	9E-11		0.0176624	[0.012-0.023] unit increase	NR [6912294] (imputed)	N
1053	chr18	61366206	61366207	rs2037511	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	18q21.33		rs2037511-G	0.833993	5E-11		0.017	[0.011-0.023] unit increase	NR [7250403] (imputed)	N
1053	chr18	61366206	61366207	rs2037511	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	18q21.33	NR	rs2037511-A	0.165391	9E-10		0.016025	[0.011-0.021] unit increase	Affymetrix [16668957] (imputed)	N
1053	chr18	61366643	61366644	rs77310528	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.33	NR	rs77310528-A	0.01742	2E-8	(LDHB)	0.1366	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr18	61366643	61366644	rs77310528	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.33	NR	rs77310528-A	0.01742	2E-11	(GSN)	0.05342	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr18	61409459	61409460	rs79157530	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q21.33	NR	rs79157530-A	0.0122	6E-10	(GSN)	0.06221	NR unit increase	Illumina [1671387] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	18q21.33	SERPINB7	rs12964116-G	0.0354620955776134	1E-9		0.10761888	[0.073-0.142] unit increase	Affymetrix [35186738] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	18q21.33	SERPINB7	rs12964116-G	0.037	5E-23		0.109	[0.087-0.131] unit decrease	NR [NR] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	18q21.33	SERPINB7	rs12964116-G	0.037	6E-23		0.108	[0.086-0.13] unit decrease	NR [7647814] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	18q21.33	SERPINB7	rs12964116-G	0.04	2E-8				NR [> 9500000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	18q21.33	SERPINB7	rs12964116-G	0.036428000000000016	3E-9		1.0997304	1.06583849646651-1.13470005768462]	NR [9572556] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	18q21.33	NR	rs12964116-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	18q21.33	NR	rs12964116-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	18q21.33	HMSD, SERPINB2, SERPINB7, SERPINB10	rs12964116-G	0.035452	2E-9		1.1031857	[1.07-1.14]	Affymetrix [8274727] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	18q21.33	SERPINB7	rs12964116-G	0.03547	4E-9				Affymetrix [15688218] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	18q21.33	SERPINB7, SERPINB11, SERPINB2	rs12964116-G	0.036	3E-16		1.336	[1.247-1.432]	Affymetrix [10894596] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	18q21.33	SERPINB7, SERPINB11, SERPINB2	rs12964116-G	0.036	5E-8		1.916	[1.23-2.6] unit decrease	Affymetrix [10894596] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	18q21.33	SERPINB7	rs12964116-G	0.036	7E-8		1.174	[1.12-1.23]	Affymetrix [9000000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	18q21.33	SERPINB7	rs12964116-?	NR	8E-18		1.236	[1.19-1.28]	Affymetrix [9000000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	18q21.33	SERPINB7	rs12964116-G	NR	1E-6		1.092	[1.06-1.13]	Affymetrix [9000000] (imputed)	N
1053	chr18	61442618	61442619	rs12964116	29051540	Marenholz I	2017-10-20	Nat Commun	Genome-wide association study identifies the SERPINB gene cluster as a susceptibility locus for food allergy.	Food allergy	497 European ancestry cases, 2,387 European ancestry controls	1,050 European ancestry cases, 2,510 European ancestry controls	18q21.33	SERPINB7	rs12964116-G	0.050	2E-8		1.9	(discovery)	Illumina [5405832] (imputed)	N
1054	chr18	61513974	61513975	rs1243064	29051540	Marenholz I	2017-10-20	Nat Commun	Genome-wide association study identifies the SERPINB gene cluster as a susceptibility locus for food allergy.	Hen's egg allergy	288 European ancestry cases, 2,387 European ancestry controls	416 European ancestry cases, 2,510 European ancestry controls	18q21.33	SERPINB2, SERPINB7	rs1243064-A	0.259	8E-8		1.65	(discovery)	Illumina [5405832] (imputed)	N
1054	chr18	61535975	61535976	rs77972194	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	18q21.33	SERPINB2	rs77972194-A	0.0121	1E-6		0.1866	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr18	61537741	61537742	rs62099117	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	18q21.33	SERPINB7, SERPINB2	rs62099117-?		6E-6				Affymetrix [394222]	N
1054	chr18	61560754	61560755	rs563353000	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	18q21.33	SERPINB2	rs563353000-T	0.0028	5E-7		1.0221	[0.62-1.42] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr18	61581324	61581325	rs117911120	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	18q22.1	SERPINB10	rs117911120-?	NR	8E-6		0.468	[0.25-0.68] unit decrease	Illumina [6319684] (imputed)	N
1054	chr18	61598762	61598763	rs8084306	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	18q22.1	SERPINB10	rs8084306-C		2E-6		1.068	[1.04-1.097]	Illumina [4498586] (imputed)	N
1055	chr18	61613156	61613157	rs188720898	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	18q22.1	NR	rs188720898-a	0.9974	1E-9		0.61	[0.52-0.72]	Affymetrix, Illumina [16201029] (imputed)	N
1055	chr18	61648265	61648267	rs958964332	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on unswitched memory B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	18q22.1		rs958964332-T	0.01345	2E-8		0.711	[0.46-0.96] unit increase	Illumina [18237790] (imputed)	N
1055	chr18	61648265	61648267	rs958964332	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on IgD+ CD24+ B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	18q22.1		rs958964332-T	0.01345	4E-8		0.6965	[0.45-0.94] unit increase	Illumina [18237790] (imputed)	N
1055	chr18	61685652	61685653	rs77112857	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	18q22.1		rs77112857-C	NR	1E-6		1.2364		Affymetrix, Illumina [62056310] (imputed)	N
1056	chr18	61820410	61820411	rs555797289	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	18q22.1	AC100848.1, RP11-146N18.1	rs555797289-T	0.9984	8E-6		0.699	[0.39-1.01] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1056	chr18	61856966	61856967	rs9675798	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	18q22.1	NR	rs9675798-G		6E-6		0.2538	[0.15-0.36] SD units increase	NR [10700000] (imputed)	N
1057	chr18	61877155	61877156	rs4534959	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	18q22.1	SERPINB8	rs4534959-?	0.03	7E-7	(FEV1 65%)	1.7241	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1057	chr18	61971110	61971111	rs4940620	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	18q22.1	NR	rs4940620-G		4E-6		0.2494	[0.14-0.36] SD units increase	NR [10700000] (imputed)	N
1058	chr18	62042707	62042708	rs951689	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LINC01924	rs951689-?	NR	1E-5		0.11	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1058	chr18	62086507	62086508	rs12960757	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	18q22.1	NR	rs12960757-G		7E-6		0.114	[0.065-0.163] SD units decrease	NR [10700000] (imputed)	N
1058	chr18	62125062	62125063	rs4485470	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	18q22.1	NR	rs4485470-A	0.592	7E-10		0.01527059	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1059	chr18	62152457	62152458	rs11663346	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	18q22.1	NR	rs11663346-T	0.582	3E-10		0.0139519	[0.0096-0.0183] unit decrease	NR [9732723] (imputed)	N
1059	chr18	62169091	62169092	rs10469266	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	18q22.1	NR	rs10469266-A	0.9837	2E-8	(Trans/trans-18:2, EA)	0.007	[0.0046-0.0094] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1059	chr18	62170725	62170726	rs4553720	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	18q22.1	LOC284294	rs4553720-T	0.281	7E-6	(Recessive model)	1.547	[1.131-2.116]	Illumina [733202]	N
1059	chr18	62181587	62181588	rs73487618	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q22.1	NR	rs73487618-G	0.0238	6E-6	(EA)	0.0989	[0.056-0.142] unit decrease	Illumina [~ 11800000] (imputed)	N
1060	chr18	62309340	62309341	rs17814846	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	SERPINB10	rs17814846-?	NR	5E-6	(glycine)	0.15897329	[0.091-0.227] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1060	chr18	62330841	62330842	rs72942597	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q22.1	NR	rs72942597-G	0.0068	2E-6	(EA)	0.2224	[0.13-0.31] unit decrease	Illumina [~ 11800000] (imputed)	N
1060	chr18	62339299	62339300	rs8087694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	18q22.1		rs8087694-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1061	chr18	62418443	62418444	rs17073641	23577725	Naj AC	2013-05-01	Ann Hum Genet	Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis.	Age-related macular degeneration (smoking status interaction)	548 European ancestry ever smoking cases, 278 European ancestry ever smoking controls, 346 European ancestry never smoking cases, 247 European ancestry never smoking controls	NA	18q22.1	intergenic	rs17073641-C	0.45	1E-7				Affymetrix [2543887] (imputed)	N
1061	chr18	62439652	62439653	rs778780	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	18q22.1	intergenic	rs778780-G	0.17	6E-6		0.0917	[0.052-0.131] unit decrease	Illumina [544877]	N
1062	chr18	62601817	62601818	rs71358652	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	18q22.1	LOC284294	rs71358652-C	0.9742	4E-6	(AA)			Illumina [NR] (imputed)	N
1062	chr18	62628422	62628423	rs66549549	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18q22.1	NR	rs66549549-?	NR	4E-7		0.07409447	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1063	chr18	62713066	62713067	rs192503876	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q22.1	Intergenic	rs192503876-?		8E-6		3.31	[1.96-5.61]	Illumina [7645193] (imputed)	N
1063	chr18	62767788	62767789	rs1108775	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	18q22.1	intergenic	rs1108775-A	NR	8E-6	(EA)	1.55	[1.28-1.87]	Illumina [at least 756588]	N
1064	chr18	62821953	62821954	rs1035208	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	18q22.1	NR	rs1035208-?	NR	6E-6				Illumina [at least 756588]	N
1064	chr18	62884917	62884918	rs605920	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	18q22.1	CDH7	rs605920-C	NR	6E-6	(Continuous Variable)	0.04	[0.02-0.05] ug/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1064	chr18	62888707	62888708	rs80314337	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q22.1	Intergenic	rs80314337-?		5E-6		2.89	[1.83-4.56]	Illumina [7645193] (imputed)	N
1064	chr18	62898665	62898666	rs637644	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	18q22.1	CDH7	rs637644-G	0.80	7E-6	(Allelic)	32.5	[4.08-259]	Illumina [555600]	N
1065	chr18	62985881	62985882	rs17689596	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	18q22.1	CDH7	rs17689596-T	0.067	1E-6		0.316	[0.19-0.44] unit decrease	Illumina [NR] (imputed)	N
1065	chr18	62990566	62990567	rs9646588	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q22.1	NA	rs9646588-?		9E-12				Affymetrix, Illumina [NR] (imputed)	N
1065	chr18	62998774	62998775	rs8083346	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA	18q22.1	intergenic	rs8083346-G	0.346	6E-6		0.0278	[NR] % decrease	Affymetrix, Illumina [2522393] (imputed)	N
1065	chr18	63000383	63000384	rs585878	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	18q22.1	Intergenic	rs585878-T	0.737695714	2E-6		0.167278	[0.098-0.237] unit increase	Illumina [6952813] (imputed)	N
1065	chr18	63031235	63031236	rs470490	21041692	Denny JC	2010-11-01	Circulation	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	18q22.1	C18orf20, LOC643448	rs470490-G	0.39	5E-6		2.45	[1.41-3.49] ms increase	Illumina [514999]	N
1065	chr18	63040921	63040922	rs594284	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	18q22.1	NR	rs594284-T	NR	1E-8	(GEE model)	0.90559	[0.59-1.22] unit decrease	NR [NR] (imputed)	N
1066	chr18	63059974	63059975	rs116907056	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	18q22.1	CDH7	rs116907056-?		2E-6				Illumina [2668805]	N
1066	chr18	63099199	63099200	rs139424517	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01916	rs139424517-?	NR	2E-9	(male)	1.91419	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1066	chr18	63099199	63099200	rs139424517	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01916	rs139424517-?	NR	2E-8		1.58404	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1066	chr18	63150914	63150915	rs12958268	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	18q22.1	NR	rs12958268-?	NR	7E-6		0.0262	[0.015-0.038] unit decrease	Illumina [at least 560000] (imputed)	N
1067	chr18	63217224	63217225	rs9952051	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	18q22.1	intergenic	rs9952051-?	NR	5E-6		0.248	[0.14-0.36] unit increase	Illumina [at least 13000000] (imputed)	N
1067	chr18	63259635	63259636	rs11662622	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Fractional excretion of metabolites in chronic kidney disease	1,143 European ancestry cases	NA	18q22.1	LOC284294, CDH7	rs11662622-G	NR	3E-8	(Lysine)	0.258826	[0.17-0.35] unit decrease	Illumina [up to 9281895] (imputed)	N
1067	chr18	63282991	63282992	rs1373349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q22.1		rs1373349-T	NR	6E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1067	chr18	63282991	63282992	rs1373349	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q22.1	CDH7	rs1373349-C	0.316129	4E-11		0.00980624	[0.0069-0.0127] unit increase	Affymetrix [12370749]	N
1067	chr18	63282991	63282992	rs1373349	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q22.1	NR	rs1373349-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1067	chr18	63285782	63285783	rs10871589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q22.1	NA	rs10871589-A	0.6775	1E-15		0.0164	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1067	chr18	63285782	63285783	rs10871589	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	18q22.1	NA	rs10871589-A	0.6775	1E-15		0.0164	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1067	chr18	63292327	63292328	rs1838309	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q22.1	NR	rs1838309-?	NR	4E-7		5.071	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1067	chr18	63297588	63297589	rs1344374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q22.1		rs1344374-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1068	chr18	63315067	63315068	rs1942834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q22.1		rs1942834-G	NR	3E-13		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1068	chr18	63335075	63335076	rs186668408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinal detachment	6,591 European ancestry cases, 470,440 European ancestry controls, 1,389 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	18q22.1		rs186668408-A	NR	4E-8		1.1308	[0.73-1.53] unit increase	Affymetrix, Illumina [25843609] (imputed)	N
1068	chr18	63343166	63343167	rs148873983	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	18q22.1	NR	rs148873983-A		2E-6		0.5391	[0.32-0.76] unit decrease	Illumina [12759548] (imputed)	N
1068	chr18	63404285	63404286	rs9964122	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q22.1	NR	rs9964122-?	NR	5E-7		5.034	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1068	chr18	63417308	63417309	rs3810082	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q22.1	NR	rs3810082-?	NR	1E-6		0.0085794	[0.0051-0.012] unit increase	Affymetrix [805426] (imputed)	N
1068	chr18	63426978	63426979	rs2032217	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q22.1	NR	rs2032217-G	0.6671	3E-11		0.0268	[0.019-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1069	chr18	63461200	63461201	rs17710386	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	18q22.1	CDH7	rs17710386-C	0.34	3E-8		0.014	[0.0081-0.0199] unit increase	Illumina [6108953] (imputed)	N
1069	chr18	63461637	63461638	rs17783165	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q22.1	NA	rs17783165-T	0.671	3E-13		0.0128	[0.0095-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
1069	chr18	63466439	63466440	rs77926594	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 40)	2,595 Tanzanian ancestry individuals	NA	18q22.1		rs77926594-?	NR	2E-8				Illumina [NR] (imputed)	N
1069	chr18	63487144	63487145	rs8092627	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q22.1	NR	rs8092627-?	NR	7E-7				Affymetrix [NR]	N
1069	chr18	63501971	63501972	rs72944032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q22.1	Intergenic	rs72944032-A	0.2504	1E-13	(MTAG)	0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1069	chr18	63501971	63501972	rs72944032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q22.1	Intergenic	rs72944032-G	0.7496	8E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1069	chr18	63501971	63501972	rs72944032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q22.1	Intergenic	rs72944032-A	0.2594	3E-10	(MTAG)	0.0164	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1069	chr18	63516254	63516255	rs72944064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q22.1		rs72944064-T	0.7437	9E-10		0.0098	[0.0067-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1069	chr18	63516254	63516255	rs72944064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q22.1	Intergenic	rs72944064-T	0.7437	4E-12	(MTAG)	0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1069	chr18	63536016	63536017	rs2587410	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	18q22.1	CDH7	rs2587410-T	0.253061	1E-8		5.72	z score decrease	NR [~ 10847151] (imputed)	N
1069	chr18	63543344	63543345	rs7231247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	18q22.1		rs7231247-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1069	chr18	63553041	63553042	rs17075438	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q22.1	Intergenic	rs17075438-A	0.2799	7E-15	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1069	chr18	63554244	63554245	rs17723514	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q22.1	NR	rs17723514-?	NR	2E-6		4.796	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1070	chr18	63623730	63623731	rs7237806	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	CDH19	rs7237806-?	NR	4E-6	(quinolinic acid)	0.18926471	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1070	chr18	63632728	63632729	rs12963883	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	18q22.1	NR	rs12963883-?	NR	7E-6	(Richness)	14.4052	[8.15-20.66] unit increase	Illumina [5293637] (imputed)	N
1070	chr18	63653895	63653896	rs10469104	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	18q22.1	intergenic	rs10469104-T	NR	9E-6		0.17039	[0.095-0.246] unit decrease	Illumina [7433384] (imputed)	N
1070	chr18	63656059	63656060	rs2216270	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	18q22.1	RP11-389J22.3	rs2216270-C	NR	1E-8		0.0154	unit decrease	Affymetrix [9327396] (imputed)	N
1070	chr18	63656059	63656060	rs2216270	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Frequency of friend / family visits	342,461 European ancestry individuals	NA	18q22.1	RP11-389J22.3	rs2216270-?	NR	5E-6				Affymetrix [up to 9327396] (imputed)	N
1070	chr18	63660958	63660959	rs115443594	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		18q22.1	Intergenic	rs115443594-T	0.966	4E-6	(liability model)	0.22	[0.12-0.32] unit decrease	NR [19725427] (imputed)	N
1071	chr18	63731738	63731739	rs2715291	31729902	Penney KL	2019-11-15	J Urol	Genome-wide Association Study for Urinary and Fecal Incontinence in Women.	Fecal incontinence	4,247 European ancestry female cases, 11,634 European ancestry female controls	NA	18q22.1	NR	rs2715291-?	NR	4E-7				Affymetrix, Illumina [1410640] (imputed)	N
1072	chr18	63879971	63879972	rs4490092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q22.1	Intergenic	rs4490092-T	0.4591	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr18	63879971	63879972	rs4490092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	18q22.1	Intergenic	rs4490092-T	0.4591	4E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1072	chr18	63879971	63879972	rs4490092	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q22.1	Intergenic	rs4490092-T	0.4594	4E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1072	chr18	63960404	63960405	rs144701438	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	18q22.1	NR	rs144701438-G		1E-6		0.4819	[0.29-0.68] SD units increase	NR [10700000] (imputed)	N
1073	chr18	64015503	64015504	rs150466001	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	18q22.1	CDH19	rs150466001-C	0.9653	4E-6	(AA)			Illumina [NR] (imputed)	N
1073	chr18	64067198	64067199	rs75649790	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q22.1	NR	rs75649790-?	NR	3E-8				Illumina [7760689] (imputed)	N
1075	chr18	64260478	64260479	rs9948875	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	CDH7	rs9948875-?	NR	9E-7	(PC 32:1)	0.2643716	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1076	chr18	64363799	64363800	rs9958145	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	18q22.1		rs9958145-A	0.2009	4E-8		0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1076	chr18	64417009	64417010	rs1489298	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	DSEL	rs1489298-?	NR	2E-7	(PC 32:1)	0.26145265	[0.16-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1077	chr18	64507407	64507408	rs138098194	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	18q22.1	Intergenic	rs138098194-A	NR	4E-7	(between families)	5.084	unit increase	Affymetrix [up to 15107142] (imputed)	N
1077	chr18	64523027	64523028	rs12961645	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	DSEL	rs12961645-?	NR	2E-7	(PC 32:1)	0.28634444	[0.18-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
1077	chr18	64526232	64526233	rs34329963	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q22.1	CDH19, DSEL	rs34329963-C	0.887	1E-8		1.032311		Affymetrix [11880941] (imputed)	N
1077	chr18	64570384	64570385	rs7234531	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	18q22.1	DSEL, CDH19	rs7234531-?	NR	3E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1077	chr18	64579524	64579525	rs2195041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q22.1	Intergenic	rs2195041-A	0.415	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1078	chr18	64629497	64629498	rs116561224	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (statins)	59 European ancestry cases, 10,588 European ancestry controls	NA	18q22.1	intergenic	rs116561224-?	0.09	7E-9		5.4	3.0-9.5	Illumina [505740] (imputed)	N
1078	chr18	64699973	64699974	rs73963343	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	18q22.1	NR	rs73963343-?	NR	9E-8				Affymetrix [5486770] (imputed)	N
1080	chr18	64952212	64952213	rs8099213	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		18q22.1	NR	rs8099213-A	0.35	5E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.52	[1.27-1.81]	Illumina [414804] (imputed)	N
1081	chr18	65017099	65017100	rs2124349	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	18q22.1	C18orf4, DSEL	rs2124349-?	0.04926	4E-6	(IED)			Illumina [475971]	N
1081	chr18	65033677	65033678	rs9951011	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to selective serotonin reuptake inhibitors and depression	3,340 European ancestry non-responder cases, 191,882  European ancestry healthy controls	NA	18q22.1	CDH19, DSEL	rs9951011-?		2E-6		1.1806375	[1.1-1.26]	Illumina [~ 12000000] (imputed)	N
1081	chr18	65071622	65071623	rs181331502	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	18q22.1	MIR5011, DSEL	rs181331502-A	0.9948	6E-9		0.663	[0.45-0.88] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1082	chr18	65161476	65161477	rs78723535	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	18q22.1	DSEL	rs78723535-T	NR	7E-6		0.69034195	[0.4-0.98] unit decrease	Illumina [> 6200000] (imputed)	N
1082	chr18	65165114	65165115	rs34744859	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to oxcarbazepine in focal epilepsy	98 European ancestry cases, 296 European ancestry controls	NA			rs34744859-?	NR	4E-6				Illumina [NR] (imputed)	N
1082	chr18	65185420	65185421	rs6566288	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	18q22.1		rs6566288-?	NR	9E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
1082	chr18	65191490	65191491	rs12606068	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18q22.1	RP11-638L3.1, DSEL	rs12606068-G	NR	5E-6	(sleep duration, weekdays)	0.32	[0.18-0.46] unit decrease	Affymetrix [7141204] (imputed)	N
1083	chr18	65285278	65285279	rs17077540	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	18q22.1	DSEL	rs17077540-G	0.11	2E-7		1.61		Affymetrix [671424]	N
1083	chr18	65331810	65331811	rs368316431	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	18q22.1	NR	rs368316431-A	0.9545	9E-7		2.8002	[1.68-3.92] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1083	chr18	65371536	65371537	rs10516005	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.1	TXNDC10	rs10516005-?	NR	8E-7	(asparagine)	0.26423714	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1083	chr18	65400424	65400425	rs13353224	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	18q22.1	intergenic	rs13353224-?	NR	9E-6	(count)			Perlegen [429981]	N
1084	chr18	65462513	65462514	rs11874708	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	18q22.1	RP11-638L3.1	rs11874708-C	0.10	4E-6		1.31	[0.76-1.86] unit increase	Illumina [6380737] (imputed)	N
1084	chr18	65470133	65470134	rs11660238	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	NR	rs11660238-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1084	chr18	65470748	65470749	rs114535501	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	NR	rs114535501-?	NR	6E-6				NR [up to 8466825] (imputed)	N
1084	chr18	65471517	65471518	rs74789784	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	NR	rs74789784-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1084	chr18	65472042	65472043	rs75687134	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	NR	rs75687134-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1084	chr18	65483811	65483812	rs11661646	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	18q22.1	NR	rs11661646-?	NR	6E-6				NR [up to 8466825] (imputed)	N
1084	chr18	65494451	65494452	rs17184817	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	18q22.1		rs17184817-G	NR	5E-6		2.52	[1.69-3.76]	Illumina [7488175] (imputed)	N
1086	chr18	65675613	65675614	rs148222222	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	18q22.1	RP11-638L3.1	rs148222222-T	0.0169	1E-6		0.1133	NR unit increase	NR [NR] (imputed)	N
1086	chr18	65718955	65718956	rs12964323	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	18q22.1	NR	rs12964323-?	NR	2E-6		3.419	[NR]	Illumina [4196861] (imputed)	N
1086	chr18	65723000	65723001	rs8087995	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	18q22.1	intergenic	rs8087995-?	NR	2E-6		3.4	[2.05-5.62]	Illumina [4196861] (imputed)	N
1087	chr18	65823882	65823883	rs4891336	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Diarrhea in mesalamine-treated irritable bowel disease	86 Japanese ancestry cases, 1,437 Japanese ancestry controls	23 Japanese ancestry cases, 765 Japanese ancestry controls	18q22.1	NR	rs4891336-C	0.084	2E-7		8.03	[7.24-8.82]	NR [7215020] (imputed)	N
1087	chr18	65827942	65827943	rs17078595	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	18q22.1	NR	rs17078595-C	NR	3E-6				Illumina [at least 756588]	N
1087	chr18	65845648	65845649	rs17078639	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	18q22.1	intergenic	rs17078639-A	0.25	7E-6		0.0719	[0.041-0.103] unit decrease	Illumina [6380737] (imputed)	N
1088	chr18	65938253	65938254	rs187701096	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18q22.1	intergenic	rs187701096-G	0.0415746462835922	2E-7	(F_Streptococcaceae_HB)	0.834947	[0.52-1.15] unit decrease	Illumina [7711310] (imputed)	N
1088	chr18	65953147	65953148	rs117066274	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Eubacterium R sp000431535 abundance in stool	5,959 Finnish ancestry individuals	NA	18q22.1		rs117066274-T	0.0457307	5E-9		0.162134	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1089	chr18	66119025	66119026	rs512482	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	18q22.1	intergenic	rs512482-T	0.978	9E-10	(YKL-40)	24.412	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
1089	chr18	66137728	66137729	rs8094195	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q22.1	NR	rs8094195-?	NR	9E-6		2873.4	NR unit increase	Illumina [2379855]	N
1090	chr18	66199118	66199119	rs62097965	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	18q22.1	LOC643582	rs62097965-T	0.0259	9E-6		2.596	[1.702-3.959]	Affymetrix, Illumina [14074516] (imputed)	N
1090	chr18	66214695	66214696	rs7244261	25917933	Zai CC	2014-11-20	J Psychiatr Res	A genome-wide association study of suicide severity scores in bipolar disorder.	Suicide in bipolar disorder	959 European ancestry individuals	NA	18q22.1	TMX3	rs7244261-T		4E-6	(suicide attempt)	4.606	z score increase	Affymetrix, Illumina [2659407] (imputed)	N
1090	chr18	66266533	66266534	rs4891340	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK1	5,361 Icelandic ancestry individuals	NA	18q22.1		rs4891340-G	0.03138	1E-14		0.0831763	[0.062-0.104] unit increase	Illumina [7506463] (imputed)	N
1090	chr18	66292258	66292259	rs17232800	23728934	Yang L	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	18q22.1	TMX3	rs17232800-?	NR	3E-6				Affymetrix [656051]	N
1090	chr18	66292517	66292517	rs199946046	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	18q22.1	NR	rs199946046-TGGC	NR	7E-6		2.193	[1.56-3.09]	Illumina [13976150] (imputed)	N
1090	chr18	66314071	66314072	rs1704734	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	18q22.1	NR	rs1704734-?	NR	6E-6		1.3235	[NR]	Affymetrix [722112]	N
1091	chr18	66379737	66379738	rs139095266	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	18q22.1	TMX3	rs139095266-G	0.01	8E-8		0.475	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1092	chr18	66497583	66497584	rs116887816	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	18q22.1	NR	rs116887816-?		6E-6		0.037	[0.02-0.054] unit increase	Illumina [7533529] (imputed)	N
1092	chr18	66499547	66499548	rs12052005	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	18q22.1	CCDC102B	rs12052005-?	NR	3E-7	(African)			Illumina [4404269] (imputed)	N
1092	chr18	66499547	66499548	rs12052005	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q22.1	CCDC102B	rs12052005-T	0.2127	4E-7	(African)			Illumina [4404269] (imputed)	N
1092	chr18	66544754	66544755	rs1539893	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	18q22.1	CCDC102B	rs1539893-G	0.188	3E-6		0.06	[0.035-0.085] unit increase	Illumina [747076]	N
1092	chr18	66575527	66575528	rs73462092	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	18q22.1	CCDC102B	rs73462092-?		3E-6				Illumina [4322238] (imputed)	N
1093	chr18	66667591	66667592	rs12454149	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q22.1	NR	rs12454149-?	NR	8E-6		1433.804	NR unit increase	Illumina [2379855]	N
1094	chr18	66744287	66744288	rs11873439	29725004	Hosoda Y	2018-05-03	Nat Commun	CCDC102B confers risk of low vision and blindness in high myopia.	Myopic maculopathy	4,476 Japanese ancestry individuals	3,279 Japanese ancestry individuals	18q22.1	CCDC102B	rs11873439-C	0.418	2E-12		1.43	[1.30-1.59]	Illumina [4710779] (imputed)	N
1094	chr18	66796400	66796401	rs73967838	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.2	NR	rs73967838-T	0.04355	4E-9	(NPC2)	0.04332	NR unit increase	Illumina [1671387] (imputed)	N
1095	chr18	66853350	66853351	rs8089640	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	18q22.2	NR	rs8089640-?	NR	1E-6		0.0831	[0.05-0.116] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1095	chr18	66888053	66888054	rs17080623	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	18q22.2	NR	rs17080623-G	0.2314	5E-6	(EA)	0.0344	[0.02-0.049] unit increase	Illumina [~ 11800000] (imputed)	N
1095	chr18	66911112	66911113	rs12606715	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	18q22.2	DOK6	rs12606715-C	0.42	8E-6		1.32	[1.18-1.49] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1095	chr18	66932882	66932883	rs17828555	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	18q22.2	CCDC102B, DOK6	rs17828555-G	0.106796	6E-8		1.2270216	[0.82-1.64] unit decrease	Illumina [at least 621854] (imputed)	N
1095	chr18	66935647	66935648	rs632349	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	18q22.2	NR	rs632349-G	0.362939	3E-6		1.13	[1.08-1.2]	Illumina [8992756] (imputed)	N
1096	chr18	67005699	67005700	rs4891744	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q22.2	NR	rs4891744-?	NR	1E-6		0.00853	[0.0051-0.0119] unit increase	Affymetrix [805426] (imputed)	N
1096	chr18	67022461	67022462	rs76843715	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	18q22.2	NR	rs76843715-?	NR	8E-6		0.1181	[0.066-0.171] unit increase	Illumina [at least 560000] (imputed)	N
1096	chr18	67028816	67028817	rs11151504	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	18q22.2		rs11151504-T	NR	1E-5		1.63	[1.31-2.03]	Illumina [7582931] (imputed)	N
1097	chr18	67133966	67133967	rs10871643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q22.2	DOK6	rs10871643-A	0.675144	2E-13		0.017744264	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1097	chr18	67142856	67142857	rs17184557	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	18q22.2	DOK6	rs17184557-A	0.23	9E-7	(LS BMD, women)	0.13	[NR] g/cm2 increase	Affymetrix [433510]	N
1097	chr18	67161934	67161935	rs1550598	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (maternal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	18q22.2	DOK6	rs1550598-?	NR	3E-6		0.53	[0.31-0.75] unit increase	Affymetrix [629686]	N
1097	chr18	67186056	67186057	rs4491635	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q22.2	DOK6	rs4491635-A	0.3869	8E-6				Illumina [4404269] (imputed)	N
1097	chr18	67191422	67191423	rs17793051	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q22.2	NR	rs17793051-?	NR	1E-7		0.0091055	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1097	chr18	67203277	67203278	rs17773790	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	18q22.2	NR	rs17773790-?	NR	7E-6		0.061	[0.034-0.088] unit decrease	Illumina [at least 560000] (imputed)	N
1097	chr18	67208391	67208392	rs12958013	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	18q22.2	NR	rs12958013-?	NR	6E-6		0.090809114	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1097	chr18	67209140	67209141	rs8087192	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q22.2	NR	rs8087192-?	NR	6E-6		2309.9253	NR unit increase	Illumina [2379855]	N
1097	chr18	67224055	67224056	rs17775100	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	18q22.2		rs17775100-T	NR	8E-6		4.0464	[2.31-5.78] unit increase	Illumina [NR] (imputed)	N
1098	chr18	67283140	67283141	rs10513968	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	18q22.2	DOK6	rs10513968-?		1E-6				Affymetrix, Illumina [1348798]	N
1098	chr18	67329535	67329536	rs60145381	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.2		rs60145381-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1099	chr18	67423535	67423536	rs9954116	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.2		rs9954116-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1099	chr18	67445151	67445152	rs9954561	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.2	NR	rs9954561-C	0.04007	3E-9	(ACLY)	0.1794	NR unit increase	Illumina [1671387] (imputed)	N
1099	chr18	67463068	67463069	rs8098468	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18q22.2	CD226	rs8098468-A	0.231209274579955	2E-6	(G_unclassified_K_Bacteria_RNT)	0.144202	[0.084-0.204] unit decrease	Illumina [7711310] (imputed)	N
1100	chr18	67516845	67516846	rs893001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	18q22.2		rs893001-C	NR	3E-8		0.0705	[0.046-0.095] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1100	chr18	67516845	67516846	rs893001	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	18q22.2	CD226	rs893001-C	NR	1E-10		0.01	[0.007-0.015] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1100	chr18	67518842	67518843	rs1790576	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q22.2	NR	rs1790576-C	0.534037	2E-11		0.012555	[0.0089-0.0162] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1100	chr18	67519203	67519204	rs1790963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q22.2		rs1790963-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1100	chr18	67522820	67522821	rs34875178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	18q22.2	CD226	rs34875178-T	0.474924	7E-9		0.013007774	[0.0086-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67522820	67522821	rs34875178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	18q22.2	CD226	rs34875178-T	0.474945	4E-24		0.022784442	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67522820	67522821	rs34875178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	18q22.2	CD226	rs34875178-T	0.474893	3E-17		0.01891379	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67522820	67522821	rs34875178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	18q22.2	CD226	rs34875178-T	0.474914	4E-17		0.01879771	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67524382	67524383	rs4891780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q22.2	NR	rs4891780-C	0.52549	4E-429		0.085326	[0.082-0.089] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1100	chr18	67525285	67525286	rs1790961	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	18q22.2	NR	rs1790961-T	0.4761	2E-12		0.0181004	[0.013-0.023] unit decrease	Affymetrix [3505788] (imputed)	N
1100	chr18	67526025	67526026	rs1808094	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	18q22.2		rs1808094-T	NR	2E-10		0.122877	[0.085-0.161] unit increase	NR [2787054] (imputed)	N
1100	chr18	67526025	67526026	rs1808094	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	18q22.2		rs1808094-T	NR	3E-9		0.127739	[0.086-0.17] unit increase	NR [5054572] (imputed)	N
1100	chr18	67526643	67526644	rs1615504	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	18q22.2	CD226	rs1615504-T	0.47	2E-11		1.13		Illumina [135870]	N
1100	chr18	67526809	67526809	rs34086233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q22.2	CD226	rs34086233-GA	0.52146	2E-121		0.053092632	[0.049-0.058] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67527700	67527701	rs7244202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q22.2	CD226	rs7244202-C	0.47642	8E-49		0.033286687	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67528429	67528430	rs1790946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	18q22.2	CD226	rs1790946-T	0.524	2E-17		0.03110678	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr18	67529964	67529968	rs35977166	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	18q22.2	CD226	rs35977166-T	0.5243	2E-59		0.05838445	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr18	67530438	67530439	rs727088	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q22.2	NR	rs727088-G	0.4822	1E-6	(EA)	1.0637558	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1100	chr18	67530438	67530439	rs727088	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	18q22.2	CD226	rs727088-G	0.484	5E-9		1.077	[1.046-1.108]	Affymetrix, Illumina [1230000] (imputed)	N
1100	chr18	67531641	67531642	rs763361	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	18q22.2	CD226	rs763361-T	0.478	5E-11		1.06	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1100	chr18	67531641	67531642	rs763361	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	18q22.2	CD226	rs763361-C	NR	1E-9		1.12	[NR]	Affymetrix, Illumina [NR]	N
1100	chr18	67531641	67531642	rs763361	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	18q22.2	CD226	rs763361-A	0.47	1E-8		1.16	[1.10-1.22]	Affymetrix [NR]	N
1100	chr18	67531796	67531797	rs763362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q22.2	NR	rs763362-G	0.398747	2E-15		0.015565	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1100	chr18	67532291	67532292	rs1788105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	18q22.2		rs1788105-G	NR	3E-12		0.0114	[0.0083-0.0145] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1100	chr18	67532291	67532292	rs1788105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	18q22.2	NR	rs1788105-G	0.52762	4E-15		0.015659	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1100	chr18	67532291	67532292	rs1788105	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	18q22.2	CD226	rs1788105-G	0.5282	4E-11		0.02340706	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q22.2	CD226	rs56249713-C	0.419611	4E-9		0.013277983	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q22.2	CD226	rs56249713-C	0.419664	2E-12		0.015851475	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q22.2	CD226	rs56249713-C	0.419683	1E-12		0.016033778	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs56249713-C	0.406124	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q22.2	NR	rs56249713-C	0.416741	1E-11		0.012816	[0.0091-0.0165] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1100	chr18	67533331	67533332	rs56249713	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	18q22.2	CD226	rs56249713-C	0.418115	9E-10		0.057151403	[0.039-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
1100	chr18	67535183	67535184	rs1790588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	18q22.2		rs1790588-C	NR	9E-11		0.0558	[0.039-0.073] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1100	chr18	67535183	67535184	rs1790588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	18q22.2		rs1790588-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1100	chr18	67536495	67536496	rs12969657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q22.2	CD226	rs12969657-T	0.520191	8E-328		0.08837964	[0.084-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67536495	67536496	rs12969657	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	18q22.2	CD226	rs12969657-T	NR	3E-11		0.007	[0.005-0.009] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1100	chr18	67536616	67536617	rs8099412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs8099412-C	0.459482	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1100	chr18	67536616	67536617	rs8099412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	18q22.2		rs8099412-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1100	chr18	67537269	67537270	rs12956324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q22.2	NR	rs12956324-A	0.402959	2E-13		0.013776	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1100	chr18	67537350	67537351	rs17207042	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q22.2	NR	rs17207042-?	NR	2E-9	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1100	chr18	67538823	67538824	rs1788103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	18q22.2	CD226	rs1788103-G	0.47814	4E-12		0.015375048	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1100	chr18	67538823	67538824	rs1788103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs1788103-G	0.480254	3E-14				Affymetrix, Illumina [19872809] (imputed)	N
1100	chr18	67538823	67538824	rs1788103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	18q22.2		rs1788103-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1100	chr18	67539391	67539392	rs1865761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs1865761-T	0.490246	2E-432				Affymetrix, Illumina [17210439] (imputed)	N
1100	chr18	67539391	67539392	rs1865761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q22.2	CD226	rs1865761-C	0.521	4E-117		0.08320315	[0.076-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1100	chr18	67540722	67540723	rs1788100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q22.2		rs1788100-G	NR	6E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1100	chr18	67543687	67543688	rs1788097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q22.2		rs1788097-T	NR	9E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1100	chr18	67543687	67543688	rs1788097	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	18q22.2	CD226	rs1788097-T	0.392	6E-10		1.096	[1.07-1.13]	Illumina [11270530] (imputed)	N
1100	chr18	67543687	67543688	rs1788097	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	18q22.2	CD226	rs1788097-T	0.49	7E-12		1.19	[1.13-1.25]	Affymetrix, Illumina [7891602] (imputed)	N
1100	chr18	67543687	67543688	rs1788097	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	18q22.2	CD226	rs1788097-A	0.483	3E-8		1.15	[1.10-1.21]	Illumina [140322] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs2469434-C	0.401843	5E-13				Affymetrix, Illumina [24649327] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.2	NR	rs2469434-C	0.405612	1E-16				Affymetrix, Illumina [23114412] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	18q22.2	CD226	rs2469434-C	NR	3E-8		1.0546298	NR	Affymetrix, Illumina [8278136] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	18q22.2	CD226	rs2469434-T	NR	2E-6		0.067737	[-0.0084-0.14387] unit decrease	Illumina [8380626] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	18q22.2	CD226	rs2469434-T	0.63	2E-6	(East Asian)	0.12913	[0.076-0.182] unit decrease	Illumina [8380626] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18q22.2	CD226	rs2469434-C	0.4	9E-10		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1100	chr18	67544045	67544046	rs2469434	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	18q22.2	CD226	rs2469434-C	0.37	1E-8	(East Asian)	1.11	[1.07-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1100	chr18	67546689	67546690	rs113568918	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	18q22.2	NR	rs113568918-?	NR	5E-6		0.05672	[0.032-0.081] unit decrease	Affymetrix [9658292] (imputed)	N
1100	chr18	67548626	67548627	rs1124980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q22.2	CD226	rs1124980-A	0.608157	8E-10		0.014225697	[0.0097-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67561517	67561518	rs66504140	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	18q22.2	CD226	rs66504140-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
1100	chr18	67569078	67569079	rs2849474	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	18q22.2	CD226	rs2849474-T	0.907	6E-6		0.0804	[0.046-0.115] unit decrease	NR [4841651] (imputed)	N
1100	chr18	67569563	67569564	rs75828748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	18q22.2		rs75828748-C	NR	5E-10		0.0862	[0.059-0.113] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1100	chr18	67569563	67569564	rs75828748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	18q22.2	CD226	rs75828748-C	0.00825900000000002	2E-10		0.0838585	[0.058-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67569563	67569564	rs75828748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	18q22.2	CD226	rs75828748-C	0.00825399999999998	2E-10		0.08305875	[0.058-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67569563	67569564	rs75828748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	18q22.2	NR	rs75828748-T	0.991709	2E-10		0.072691	[0.05-0.095] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1100	chr18	67571609	67571610	rs4891786	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q22.2	NR	rs4891786-?	NR	4E-38				Affymetrix [NR]	N
1100	chr18	67599515	67599516	rs3937015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	18q22.2	CD226	rs3937015-C	0.9809484	9E-31		0.0957436	[0.079-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67601635	67601636	rs1823778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q22.2	CD226	rs1823778-C	0.867353	4E-16		0.03165066	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1100	chr18	67601635	67601636	rs1823778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q22.2	CD226	rs1823778-C	0.8685	9E-13		0.03846836	[0.028-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1100	chr18	67605806	67605807	rs12970649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q22.2	CD226	rs12970649-T	0.9622992	1E-11		0.052237693	[0.037-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1101	chr18	67691192	67691193	rs185898	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	18q22.2	RTTN	rs185898-A	0.0106	3E-20		0.1620361	[0.13-0.2] unit increase	Affymetrix [~ 2500000] (imputed)	N
1101	chr18	67691192	67691193	rs185898	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q22.2	RTTN	rs185898-A	0.0106	1E-39		0.2333282	[0.2-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
1101	chr18	67695504	67695505	rs1545071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q22.2	RTTN	rs1545071-A	0.9614689	6E-15		0.045884967	[0.034-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1101	chr18	67701582	67701583	rs142021700	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Hypopharyngeal or laryngeal cancer	394 European ancestry cases, 4,493 European ancestry controls	295 European ancestry cases, 3,232 European ancestry controls	18q22.2	RTTN	rs142021700-C	0.01	3E-9		3.95	[2.51-6.21]	Illumina [7858089] (imputed)	N
1101	chr18	67750820	67750821	rs189976276	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	18q22.2	RTTN	rs189976276-A	0.9988	5E-6		1.1285	[0.64-1.61] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1101	chr18	67755228	67755229	rs75356692	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	18q22.2		rs75356692-?	NR	4E-8		0.172123	[0.11-0.23] unit decrease	NR [9800000] (imputed)	N
1102	chr18	67768913	67768914	rs7232268	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	18q22.2	NR	rs7232268-G	NR	3E-6		0.2821	[0.16-0.4] SD units decrease	NR [10700000] (imputed)	N
1102	chr18	67768913	67768914	rs7232268	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	18q22.2	NR	rs7232268-G		3E-6		0.2759	[0.16-0.39] SD units decrease	NR [10700000] (imputed)	N
1102	chr18	67815357	67815358	rs148586495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q22.2	RTTN	rs148586495-T	0.010711	3E-21		0.12061519	[0.096-0.146] unit increase	Affymetrix [93095623] (imputed)	N
1102	chr18	67847004	67847005	rs7226831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q22.2	RTTN	rs7226831-C	0.671979	4E-14		0.018758303	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1102	chr18	67856077	67856078	rs145037750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	18q22.2		rs145037750-A	NR	2E-8		0.0746	[0.049-0.101] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1102	chr18	67856077	67856078	rs145037750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	18q22.2	RTTN	rs145037750-A	0.00874699999999995	6E-20		0.11710251	[0.092-0.142] unit decrease	Affymetrix [93095623] (imputed)	N
1102	chr18	67856077	67856078	rs145037750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q22.2		rs145037750-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1103	chr18	68006740	68006741	rs1484735	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.2	RTTN	rs1484735-?	NR	3E-6	(deoxycholate)	0.1754723	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1103	chr18	68007620	68007621	rs17236768	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Milk allergy (parent-of-origin effect)	230 European ancestry trios, 10 European ancestry father-child pairs, 25 European ancestry mother-child pairs, 10 European ancestry affected child	NA	18q22.2	LOC101927481	rs17236768-?	NR	8E-7				Illumina [NR]	N
1104	chr18	68058238	68058239	rs2581685	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Type 2 diabetes	748 Chinese ancestry cases, 4,983 Chinese ancestry controls	NA	18q22.2	SOCS6	rs2581685-A	0.78	3E-6		1.46		Illumina [8045193] (imputed)	N
1104	chr18	68058946	68058947	rs62103445	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	18q22.2	NR	rs62103445-?	NR	2E-8	(right insula)			NR [9227495] (imputed)	N
1104	chr18	68069270	68069271	rs117535166	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18q22.2	RPS2P6, SOCS6, RTTN	rs117535166-G	NR	7E-6	(sleep offset, weekdays)	0.4726	[0.27-0.68] unit decrease	Affymetrix [7141204] (imputed)	N
1104	chr18	68070425	68070426	rs80080484	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	18q22.2	RP11-41O4.3	rs80080484-?	0.97	4E-6		5.882353	[2.7-12.5]	Affymetrix, Illumina [7000000] (imputed)	N
1104	chr18	68142413	68142414	rs8092443	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	18q22.2	intergenic	rs8092443-?	0.225	1E-6	(risperidone-hemoglobin A1c)			Affymetrix [492900]	N
1104	chr18	68153562	68153563	rs35493881	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	18q22.2	GTSCR1	rs35493881-?	0.359	8E-8				Affymetrix [432921]	N
1104	chr18	68153619	68153620	rs11663206	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	18q22.2	intergenic	rs11663206-?	0.289	2E-6	(risperidone-hemoglobin A1c)			Affymetrix [492900]	N
1105	chr18	68284520	68284521	rs79586998	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	18q22.2	SOCS6	rs79586998-T	0.0195431418885285	5E-7		0.0097507	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1107	chr18	68475059	68475060	rs181095590	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	18q22.2	GTSCR1	rs181095590-A	NR	4E-7		1.78	[1.59-2.00]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1108	chr18	68615591	68615592	rs10153386	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Hyperopia	361 European ancestry cases, 1,700 European ancestry controls	172 European ancestry cases, 690 European ancestry controls	18q22.2	NR	rs10153386-G	NR	8E-6		2.01	NR	Illumina [6470615] (imputed)	N
1108	chr18	68628077	68628078	rs2660917	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	18q22.2	intergenic	rs2660917-?	NR	8E-6	(serum ferritin)			Illumina [315887]	N
1108	chr18	68677483	68677484	rs2848859	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	18q22.3		rs2848859-C	0.4049	9E-6		1.354	[1.184-1.548]	Affymetrix [7975321] (imputed)	N
1109	chr18	68712174	68712175	rs188951461	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	18q22.3	NR	rs188951461-A	0.9889	3E-6		0.092414126	[0.054-0.131] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1109	chr18	68803532	68803533	rs117527115	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	18q22.3	LINC01541	rs117527115-?		5E-6				Illumina [2668805]	N
1109	chr18	68810025	68810026	rs145226619	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q22.3		rs145226619-T	0.0040839	3E-6		0.24619	[0.14-0.35] unit decrease	Affymetrix [15580782] (imputed)	N
1109	chr18	68810556	68810557	rs10163989	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	18q22.3	NR	rs10163989-A	NR	2E-6		0.03888	[0.023-0.055] unit decrease	Illumina [541493]	N
1110	chr18	68829174	68829175	rs138754224	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:2 levels	1,937 individuals	NA	18q22.3	intergenic	rs138754224-C	0.019	8E-7		0.6401	[0.39-0.89] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
1110	chr18	68841611	68841612	rs9807667	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	18q22.3	NR	rs9807667-?	NR	1E-6		0.90965927	[0.88-0.95]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1110	chr18	68842242	68842243	rs17083844	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	18q22.3	SOCS6	rs17083844-A	0.03	6E-6				Illumina [502033]	N
1111	chr18	68958479	68958480	rs549667706	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q22.3	RP11-47G4.2	rs549667706-A	0.9962	6E-6		0.3834	[0.22-0.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1111	chr18	68958479	68958480	rs549667706	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	18q22.3	RP11-47G4.2	rs549667706-A	0.9962	6E-6		0.3834	[0.22-0.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1111	chr18	68974848	68974849	rs111297422	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	18q22.3	LINC01541	rs111297422-?		2E-6				Illumina [2668805]	N
1111	chr18	68998866	68998867	rs187178557	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	18q22.3		rs187178557-T	0.0042252	4E-6		0.23897	[0.14-0.34] unit decrease	Affymetrix [15580782] (imputed)	N
1111	chr18	69054944	69054945	rs191750377	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	18q22.3	Intergenic	rs191750377-?	NR	4E-6		1.26	[1.14-1.39]	Affymetrix, Illumina [39235000] (imputed)	N
1111	chr18	69071744	69071745	rs185725127	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	8674 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Native American ancestry, Other ancestry women	NA	18q22.3		rs185725127-C	0.001	3E-8		6.4	kg decrease	NR [638486]	N
1111	chr18	69071744	69071745	rs185725127	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	3145 African American or Afro-Caribbean individuals	NA	18q22.3		rs185725127-C	0.006	2E-7		6.52	kg decrease	NR [638486]	N
1111	chr18	69071744	69071745	rs185725127	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	2158 African American or Afro-Caribbean women	NA	18q22.3		rs185725127-C	0.006	3E-6		5.97	kg decrease	NR [638486]	N
1111	chr18	69071744	69071745	rs185725127	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	13,552 European, African American or Afro-Caribbean, Hispanic or Latin American, Asian, Native American, Other ancestry individuals	NA	18q22.3		rs185725127-C	0.001	1E-9		6.92	kg decrease	NR [638486]	N
1112	chr18	69096397	69096398	rs17084405	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	18q22.3	LOC100505776	rs17084405-A	0.01	1E-7		12.1	[NR]	Affymetrix [4893794] (imputed)	N
1112	chr18	69181284	69181285	rs12964365	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	18q22.3	LOC107985179	rs12964365-T	0.15	5E-6				Illumina [622468]	N
1113	chr18	69224477	69224478	rs8089514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q22.3		rs8089514-A	NR	6E-10		0.0116	[0.0079-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1113	chr18	69224477	69224478	rs8089514	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		18q22.3	RP11-723G8.2	rs8089514-T	0.631443	1E-8		0.0081679	[0.0053-0.011] unit decrease	Affymetrix [12370749]	N
1113	chr18	69224477	69224478	rs8089514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q22.3		rs8089514-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1113	chr18	69230026	69230027	rs11660297	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q22.3	NR	rs11660297-G	0.277	7E-7	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1113	chr18	69231234	69231235	rs8096590	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	18q22.3	LINC01541	rs8096590-A	0.297955	7E-6		1.07	[1.04-1.10]	Illumina [~ 41266535] (imputed)	N
1113	chr18	69243983	69243984	rs9953955	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	18q22.3	NR	rs9953955-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1113	chr18	69248594	69248595	rs1539909	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	18q22.3	CBLN2	rs1539909-?	NR	4E-6	(Relative change in DAS28)			Illumina [486450]	N
1113	chr18	69250486	69250487	rs1942361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q22.3		rs1942361-T	NR	6E-9		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1113	chr18	69274570	69274571	rs35815903	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q22.3	NR	rs35815903-?	NR	3E-7		0.3674	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1113	chr18	69287949	69287950	rs185549704	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18q22.3		rs185549704-T	NR	4E-6	(sleep duration)	0.5929	[0.34-0.85] unit decrease	Affymetrix [7141204] (imputed)	N
1113	chr18	69316523	69316524	rs11151684	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	18q22.3	intergenic	rs11151684-C	0.50	9E-6		0.0256	[0.014-0.037] unit increase	Illumina [545605]	N
1114	chr18	69352340	69352341	rs7506093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q22.3		rs7506093-?	NR	3E-9				NR [NR]	N
1114	chr18	69352340	69352341	rs7506093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q22.3		rs7506093-?	NR	2E-9				NR [NR]	N
1114	chr18	69352340	69352341	rs7506093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q22.3		rs7506093-?	NR	4E-9				NR [NR]	N
1114	chr18	69352340	69352341	rs7506093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q22.3		rs7506093-?	NR	1E-9				NR [NR]	N
1114	chr18	69352340	69352341	rs7506093	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	18q22.3		rs7506093-?	NR	2E-9				NR [NR]	N
1114	chr18	69353969	69353970	rs7226611	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	18q22.3	NR	rs7226611-A	0.442	5E-6		0.0160083	[0.0092-0.0229] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1114	chr18	69354421	69354422	rs73462173	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	18q22.3	NR	rs73462173-G	0.114	8E-6		0.59	[0.44-0.76]	Illumina [64973696] (imputed)	N
1114	chr18	69361738	69361739	rs1942355	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	18q22.3	NR	rs1942355-C		5E-6		0.0716	[0.041-0.102] SD units increase	NR [10700000] (imputed)	N
1114	chr18	69365299	69365300	rs11665307	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q22.3	NR	rs11665307-C	0.173309217119929	3E-7	(IGP61)	0.2071	[0.13-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1114	chr18	69379389	69379390	rs2887004	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q22.3	NR	rs2887004-G	0.181545600983021	2E-6	(IGP58)	0.193	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
1114	chr18	69379389	69379390	rs2887004	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q22.3	NR	rs2887004-G	0.180826079677708	6E-6	(IGP6)	0.1862	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1114	chr18	69439072	69439073	rs17085106	19656524	Grant SF	2009-08-03	J Pediatr	A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24.	Orofacial clefts	111 European ancestry cases, 5,951 European ancestry controls	NA	18q22.3	intergenic	rs17085106-?	0.018	4E-8		4.07	[2.37-7.00]	Illumina [495858]	N
1115	chr18	69479920	69479921	rs970510	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	18q22.3	LOC101927537	rs970510-?	0.02	7E-7		6.5	[NR]	Affymetrix [4893794] (imputed)	N
1115	chr18	69497240	69497241	rs1879682	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	18q22.3	LOC100505776	rs1879682-A	0.47	8E-7	(Intercanthal width)	0.289	[NR] unit increase	Affymetrix [311944]	N
1115	chr18	69501109	69501110	rs8094969	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	18q22.3		rs8094969-A	NR	7E-6	(GLM)	3.1476	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1115	chr18	69501109	69501110	rs8094969	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	18q22.3		rs8094969-A	NR	6E-7	(GLM)	0.206	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1115	chr18	69518709	69518710	rs2685441	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	18q22.3		rs2685441-?	NR	2E-6	(MLM)	0.1840039	[0.11-0.26] unit decrease	Illumina [~ 9000000] (imputed)	N
1116	chr18	69610262	69610263	rs139506618	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	18q22.3	NR	rs139506618-C		1E-6		0.7737	[0.46-1.09] SD units increase	NR [10700000] (imputed)	N
1116	chr18	69634550	69634551	rs1893625	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.3	NETO1	rs1893625-?	NR	1E-6	(thiamine)	0.4193316	[0.25-0.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
1116	chr18	69662580	69662581	rs7240462	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	18q22.3	intergenic	rs7240462-?	NR	8E-6		1.1904762	[NR]	Affymetrix [up to 10996499] (imputed)	N
1117	chr18	69774277	69774278	rs337718	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q22.3	NR	rs337718-?	NR	1E-8		1.0538	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1117	chr18	69774277	69774278	rs337718	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q22.3	NR	rs337718-T	NR	4E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1117	chr18	69774277	69774278	rs337718	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	18q22.3	CBLN2	rs337718-?	0.29	9E-6			[NR]	Illumina [551642]	N
1118	chr18	69884263	69884264	rs11874408	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.3	NR	rs11874408-C	0.01742	2E-16	(CCDC58)	0.01687	NR unit increase	Illumina [1671387] (imputed)	N
1118	chr18	69885352	69885353	rs11662580	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to tivantinib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	18q22.3		rs11662580-?	NR	3E-7				Illumina [1510701]	N
1118	chr18	69893954	69893955	rs9966282	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	18q22.3		rs9966282-?	NR	6E-7		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1118	chr18	69926756	69926757	rs8088832	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	18q22.3	intergenic	rs8088832-C	0.508	4E-6		1.94	[1.46-2.57]	Affymetrix [556045]	N
1118	chr18	69943391	69943392	rs79027133	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	18q22.3	NETO1, CBLN2	rs79027133-C	0.188142	6E-6		0.635	[0.522 - 0.773]	Illumina [5396854] (imputed)	N
1118	chr18	69969495	69969496	rs10871700	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	18q22.3	intergenic	rs10871700-?	NR	1E-6		3.333333	[2-5.88]	Illumina [654642] (imputed)	N
1119	chr18	70085361	70085362	rs193153064	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	18q22.3	NR	rs193153064-T	0.013	1E-6		3.842	[2.221-6.645]	Illumina [7585599] (imputed)	N
1120	chr18	70129471	70129472	rs117120368	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	18q22.3	NR	rs117120368-?		8E-7	(PCB118)	0.8	[0.49-1.11] unit increase	Illumina [8736858] (imputed)	N
1120	chr18	70141319	70141320	rs722142	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.3	NETO1	rs722142-?	NR	1E-6	(adenosine diphosphate)	0.35047218	[0.21-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1120	chr18	70150938	70150939	rs2217560	23502781	Germain M	2013-03-17	Nat Genet	Genome-wide association analysis identifies a susceptibility locus for pulmonary arterial hypertension.	Pulmonary arterial hypertension (without BMPR2 mutations)	340 European ancestry cases, 1,068 European ancestry controls	285 cases, 457 controls	18q22.3	CBLN2	rs2217560-G	0.069	7E-10		1.97	[1.59-2.45]	Illumina [462499]	N
1120	chr18	70207339	70207340	rs658995	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	18q22.3	CBLN2	rs658995-A	0.282	3E-9		0.286	[0.19-0.38] mg/dL increase	Illumina [622468]	N
1120	chr18	70207339	70207340	rs658995	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	18q22.3	CBLN2	rs658995-A	0.282	1E-6	(men)	0.307	[0.19-0.43] mg/dL increase	Illumina [622468]	N
1120	chr18	70221979	70221980	rs694339	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	18q22.3	CBLN2	rs694339-?		4E-7		1.792	[NR]	Affymetrix [492217] (imputed)	N
1120	chr18	70221979	70221980	rs694339	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	18q22.3	CBLN2	rs694339-?		1E-7		1.973	[NR]	Affymetrix [492217] (imputed)	N
1120	chr18	70227020	70227021	rs17086172	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	18q22.3	CBLN	rs17086172-?	0.06	7E-6	(no asthma)	1.35		Affymetrix, Illumina [up to 2500000] (imputed)	N
1120	chr18	70234957	70234958	rs9964576	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	18q22.3	NR	rs9964576-?	NR	6E-6		5.33	[4.15-6.84]	Illumina [539000] (imputed)	N
1121	chr18	70285456	70285457	rs8093502	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	18q22.3	NR	rs8093502-?		2E-6	(females)			Illumina [1211988] (imputed)	N
1121	chr18	70296288	70296289	rs140715332	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.3	NR	rs140715332-C	0.0122	2E-8	(PRTN3)	0.06596	NR unit increase	Illumina [1671387] (imputed)	N
1122	chr18	70435897	70435898	rs7242063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q22.3		rs7242063-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1122	chr18	70442067	70442068	rs41418949	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	18q22.3	NETO1	rs41418949-T	NR	6E-7		0.358	[0.22-0.50] unit decrease	Illumina [628922]	N
1122	chr18	70477496	70477497	rs10514056	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	18q22.3	NR	rs10514056-?	NR	6E-6		1.65	[1.51-1.79]	Illumina [539000] (imputed)	N
1122	chr18	70509823	70509824	rs1942462	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q22.3	NR	rs1942462-?	NR	4E-14				Affymetrix [NR]	N
1123	chr18	70517837	70517838	rs2187114	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	18q22.3	NETO1	rs2187114-G	0.898978	2E-8		0.0185147	[0.012-0.025] unit increase	Affymetrix [NR] (imputed)	N
1123	chr18	70519427	70519428	rs6566675	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q22.3	NR	rs6566675-?	NR	2E-6		4.754	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1123	chr18	70546469	70546470	rs2156107	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	18q22.3	NETO1	rs2156107-C	0.05	3E-6		0.144	[0.083-0.205] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1123	chr18	70546469	70546470	rs2156107	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	18q22.3	NETO1	rs2156107-C	0.03	1E-6	(EA)	0.203	[0.12-0.29] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1123	chr18	70630705	70630706	rs12604566	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	18q22.3	NETO1	rs12604566-T	0.61	7E-7		3.3	[2.01-4.59] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1123	chr18	70642536	70642537	rs9945654	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	18q22.3	NR	rs9945654-G	0.0124	4E-6		2.0652	[1.2-2.93] unit decrease	Illumina [~ 600000] (imputed)	N
1123	chr18	70642553	70642554	rs9945951	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	18q22.3	NR	rs9945951-A	0.0126	4E-6		2.0573	[1.19-2.93] unit decrease	Illumina [~ 600000] (imputed)	N
1124	chr18	70669245	70669246	rs2469054	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	18q22.3	NR	rs2469054-A	0.0211	5E-6	(Trans/trans-18:2, EA)	0.0053	[0.0029-0.0077] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1124	chr18	70727723	70727724	rs1559586	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	18q22.3	RP11-169F17.1	rs1559586-C	NR	5E-8		0.696964	[0.45-0.95] unit decrease	NR [9955952] (imputed)	N
1124	chr18	70753638	70753639	rs80178925	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	18q22.3	LOC400655	rs80178925-A	0.03333	9E-6	(African)			Illumina [4404269] (imputed)	N
1125	chr18	70885037	70885038	rs9965938	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	18q22.3	Intergenic	rs9965938-?	NR	3E-7		1.72	[NR]	Affymetrix [492217] (imputed)	N
1126	chr18	70936557	70936558	rs4362469	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	18q22.3	LOC400655	rs4362469-?	NR	7E-7	(EA)	4.8	[2.84-6.76] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1126	chr18	70981471	70981472	rs9966816	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	18q22.3	LOC100505817	rs9966816-C	0.484	5E-6		0.07	[0.04-0.10] unit decrease	Affymetrix [7435577] (imputed)	N
1126	chr18	70987437	70987438	rs1943819	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	18q22.3	LOC100505817	rs1943819-A	0.294	1E-6		0.09	[0.05-0.12] unit increase	Affymetrix [7435577] (imputed)	N
1126	chr18	71021567	71021568	rs9953769	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	18q22.3	intergenic	rs9953769-G	0.099	9E-6		2.533	[NR]	Affymetrix [633420]	N
1127	chr18	71058621	71058622	rs1943816	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	18q22.3	intergenic	rs1943816-C	NR	1E-7	(Controls)			Illumina [498205]	N
1127	chr18	71067016	71067017	rs6566726	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	18q22.3		rs6566726-C	0.935617	7E-6		0.0240265	[0.014-0.034] unit decrease	Illumina [13900000] (imputed)	N
1127	chr18	71074108	71074109	rs4614819	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.3	FBXO15	rs4614819-?	NR	9E-6	(PC 34:1)	0.16169043	[0.09-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1127	chr18	71082401	71082402	rs1893503	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.3	FBXO15	rs1893503-?	NR	8E-6	(PC 32:1)	0.15234824	[0.085-0.219] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1127	chr18	71086066	71086067	rs75168112	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	18q22.3	NR	rs75168112-C		3E-6		0.1001	[0.058-0.142] SD units increase	NR [10700000] (imputed)	N
1127	chr18	71086146	71086147	rs2849346	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	18q22.3	NR	rs2849346-G		3E-6		0.077	[0.045-0.109] SD units decrease	NR [10700000] (imputed)	N
1127	chr18	71104370	71104371	rs1942793	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	18q22.3	NR	rs1942793-G	NR	5E-6		0.0717	[0.035-0.108] SD units decrease	NR [10700000] (imputed)	N
1127	chr18	71167751	71167752	rs7240777	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	18q22.3	NETO1, FBXO15	rs7240777-A	0.5632	3E-8	(FT4-Females)	0.083	[0.054-0.112] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1128	chr18	71177935	71177936	rs34693543	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	18q22.3	CTD-2354A18.1, RP11-126K15.1	rs34693543-A	0.08	7E-6		1.6944	[NR]	Illumina [421909] (imputed)	N
1128	chr18	71211744	71211745	rs1942771	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	18q22.3	intergenic	rs1942771-?	NR	8E-6		0.0295	[0.017-0.042] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1128	chr18	71263349	71263350	rs17087933	28806749	Leo PJ	2017-08-14	PLoS Genet	Defining the genetic susceptibility to cervical neoplasia-A genome-wide association study.	Cervical cancer	2,866 European ancestry cases, 6,481 European ancestry controls	NA	18q22.3	LOC100505817, FBXO15	rs17087933-?	NR	2E-6		1.2787724	[NR]	Illumina [10863230] (imputed)	N
1128	chr18	71266518	71266519	rs7231996	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms in prion disease	Up to 170 cases	NA	18q22.3	LOC100505817	rs7231996-?	0.131	3E-6		5.56	[2.59-11.95]	Illumina [518938]	N
1128	chr18	71267053	71267054	rs12959200	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	18q22.3	intergenic	rs12959200-?	0.141	2E-6		1.68	[NR]	Illumina [3922209] (imputed)	N
1130	chr18	71476132	71476133	rs17088339	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	18q22.3	FBXO15	rs17088339-A	0.02	6E-6	(AA)	0.68	[0.39-0.97] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1130	chr18	71476352	71476353	rs1430542	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	17-hydroxyprogesterone (17-OHP) levels	1,329 women	NA	18q22.3		rs1430542-C	NR	6E-9		0.165564	[0.11-0.22] unit decrease	Affymetrix [10900000] (imputed)	N
1130	chr18	71518517	71518518	rs77546126	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	18q22.3	FBXO15	rs77546126-G	0.0019	3E-9	(EA)	5.9159646	[NR] unit increase	Illumina [9039731] (imputed)	N
1130	chr18	71522090	71522091	rs17088439	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	18q22.3	FBXO15	rs17088439-T	0.0434	3E-6		2.2772	[NR] unit decrease	Illumina [1216189] (imputed)	N
1130	chr18	71552803	71552804	rs76941679	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	18q22.3	g7907.t1a	rs76941679-G	NR	3E-7	(AA)	2.2727273		Illumina [at least 360704] (imputed)	N
1131	chr18	71581505	71581506	rs2278331	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	18q22.3	FBXO15	rs2278331-A	NR	5E-6		0.14	[0.081-0.199] unit increase	Illumina [2380486] (imputed)	N
1131	chr18	71650089	71650090	rs8095104	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	18q22.3	FBXO15	rs8095104-T	NR	4E-10		0.575	[0.39-0.76] unit increase	NR [11024754] (imputed)	N
1131	chr18	71659951	71659952	rs7245232	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	18q22.3	NR	rs7245232-?	NR	1E-7		0.3865	[0.24-0.53] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1131	chr18	71667587	71667588	rs113647788	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q22.3	NR	rs113647788-T	0.089	4E-6	(IFNalpha_STAT1_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1132	chr18	71705191	71705192	rs1943940	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	18q22.3	FBXO15	rs1943940-C	0.47	8E-7	(drinks/week)	0.106	[0.053-0.159] unit increase	Affymetrix [2500000] (imputed)	N
1132	chr18	71705191	71705192	rs1943940	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	18q22.3	FBXO15	rs1943940-C	0.47	6E-7	(drinks/week)	0.1	[0.053-0.147] unit increase	Affymetrix [2500000] (imputed)	N
1132	chr18	71746944	71746945	rs12386103	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	18q22.3		rs12386103-?	NR	5E-6		0.16	[0.093-0.227] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1132	chr18	71815964	71815965	rs3737510	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	18q22.3		rs3737510-A	0.030148841	1E-6		0.07393109	[0.044-0.104] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1133	chr18	71863216	71863217	rs12608204	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q22.3	FBXO15	rs12608204-?	NR	3E-6	(asparagine)	0.20172809	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1133	chr18	71878516	71878517	rs9951925	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	18q22.3	AC090398.2	rs9951925-C	0.47	2E-6	(FG)			Illumina [588352]	N
1133	chr18	71883231	71883232	rs112367565	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18q22.3	NR	rs112367565-A	0.046207	1E-13		0.0491114	[0.036-0.062] unit increase	Affymetrix [16580851] (imputed)	N
1133	chr18	71895153	71895154	rs151174000	32433515	Meyers JL	2020-05-20	Mol Psychiatry	A genome-wide association study of interhemispheric theta EEG coherence: implications for neural connectivity and alcohol use behavior.	Theta EEG coherence	6,644 European ancestry individuals, 2,166 African American individuals	NA	18q22.3	NR	rs151174000-?		3E-8	(parieto-frontal low theta coherence at P8-P4-F8-F4)			Illumina [6832792] (imputed)	N
1133	chr18	71896468	71896469	rs9319895	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18q22.3	NR	rs9319895-A	0.5150520000000001	3E-15		0.0234581	[0.018-0.029] unit increase	Affymetrix [16580851] (imputed)	N
1133	chr18	71897146	71897147	rs35693284	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	18q22.3	NR	rs35693284-?	NR	2E-7				Illumina [1735619]	N
1133	chr18	71915784	71915785	rs73969326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	18q22.3	NR	rs73969326-A	0.10842300000000005	1E-12		0.0230056	[0.017-0.029] unit increase	Affymetrix [16583148] (imputed)	N
1133	chr18	71916635	71916636	rs117327231	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	18q22.3	NR	rs117327231-A	NR	1E-22		0.0823	[0.066-0.099] unit increase	Affymetrix [9000000] (imputed)	N
1133	chr18	71916635	71916636	rs117327231	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	18q22.3	NR	rs117327231-A	0.022789999999999977	7E-82		0.173128	[0.15-0.19] unit increase	Affymetrix [16580851] (imputed)	N
1133	chr18	71916635	71916636	rs117327231	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	18q22.3	NR	rs117327231-A	0.02290099999999995	3E-31		0.0971595	[0.081-0.114] unit increase	Affymetrix [16585745] (imputed)	N
1133	chr18	71925112	71925113	rs4327143	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	18q22.3	NR	rs4327143-A	0.714237	2E-11		0.00865739	[0.006-0.0114] unit increase	Affymetrix [16585854] (imputed)	N
1133	chr18	71925112	71925113	rs4327143	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	18q22.3	NR	rs4327143-A	0.714237	6E-7		0.00774105	[0.0046-0.0108] unit increase	Affymetrix [16585866] (imputed)	N
1133	chr18	71936164	71936165	rs17089026	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	18q22.3	NR	rs17089026-G	0.023343000000000003	7E-37		0.0530863	[0.045-0.061] unit increase	Affymetrix [16578495] (imputed)	N
1133	chr18	71938617	71938618	rs79384925	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	18q22.3	NR	rs79384925-C	0.863385	2E-41		0.0255801	[0.022-0.029] unit increase	Affymetrix [16578495] (imputed)	N
1133	chr18	71943143	71943144	rs3829639	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	18q22.3	NR	rs3829639-A	0.672156	1E-19		0.00799619	[0.0062-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
1133	chr18	71943143	71943144	rs3829639	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	18q22.3	NR	rs3829639-A	0.672156	1E-13		0.00744163	[0.0055-0.0094] unit increase	Affymetrix [16582965] (imputed)	N
1133	chr18	71945369	71945370	rs7239618	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q22.3	CYB5A	rs7239618-T	0.680625	3E-6	(CYB5A, 11287_14_3)	0.12587403	[0.073-0.178] unit increase	Illumina [> 1000000] (imputed)	N
1133	chr18	71949628	71949629	rs1788641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	18q22.3	NR	rs1788641-A	0.687572	8E-12		0.00837022	[0.0059-0.0108] unit increase	Affymetrix [16582621] (imputed)	N
1133	chr18	71949628	71949629	rs1788641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	18q22.3	NR	rs1788641-A	0.687572	2E-7		0.00715058	[0.0045-0.0098] unit increase	Affymetrix [16582614] (imputed)	N
1134	chr18	71967030	71967031	rs7239564	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	18q22.3	NR	rs7239564-C	0.856074	5E-18		0.0307663	[0.024-0.038] unit increase	Affymetrix [16585745] (imputed)	N
1134	chr18	72035813	72035814	rs11660152	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	18q22.3		rs11660152-?	NR	3E-6		0.3977445	[0.23-0.56] unit increase	Illumina [9842460] (imputed)	N
1134	chr18	72045237	72045238	rs17807329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	18q22.3	NR	rs17807329-C	NR	1E-11		0.0274	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr18	72049079	72049080	rs918258	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	18q22.3		rs918258-?	NR	1E-6		0.3406333	[0.2-0.48] unit increase	Illumina [9875426] (imputed)	N
1134	chr18	72055398	72055399	rs79214787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	18q22.3	NR	rs79214787-A	NR	2E-9		0.0444	[0.03-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr18	72070327	72070328	rs17089231	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	18q22.3	intergenic	rs17089231-T	0.07	9E-7	(male)	97.3	[58.88-135.72] unit increase	Illumina [6380737] (imputed)	N
1134	chr18	72073643	72073644	rs17234724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	18q22.3	NR	rs17234724-A	NR	1E-11		0.0512	[0.036-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1135	chr18	72115360	72115361	rs117485671	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,365 Icelandic ancestry individuals	NA	18q22.3		rs117485671-G	0.02882	2E-13		0.407206	[0.3-0.52] unit decrease	Illumina [7506463] (imputed)	N
1135	chr18	72124181	72124182	rs73472576	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	18q22.3	NR	rs73472576-C		3E-6		0.1181	[0.069-0.167] SD units increase	NR [10700000] (imputed)	N
1135	chr18	72155571	72155572	rs4892230	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	18q22.3	NR	rs4892230-?	NR	3E-7		0.069	[0.043-0.095] unit decrease	Illumina [at least 560000] (imputed)	N
1135	chr18	72174022	72174023	rs12971120	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	18q22.3	CNDP2	rs12971120-A	0.726566	1E-11	(leucylalanine)	0.17	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1135	chr18	72174022	72174023	rs12971120	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	18q22.3	CNDP2	rs12971120-A	0.726566	1E-11	(leucylalanine)	0.17	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1135	chr18	72174022	72174023	rs12971120	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	18q22.3	CNDP2	rs12971120-G	0.23	2E-7		0.099	[0.062-0.136] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1135	chr18	72174979	72174980	rs3829640	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA		AX747775	rs3829640-A	0.726832	2E-21	(valylleucine)	0.245	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
1135	chr18	72174979	72174980	rs3829640	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals		AX747775	rs3829640-A	0.726832	2E-21	(valylleucine)	0.245	[0.19-0.3] unit decrease	Illumina [13039987] (imputed)	N
1135	chr18	72174979	72174980	rs3829640	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA		NR	rs3829640-G		1E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
1135	chr18	72177464	72177465	rs8084058	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	18q22.3	NR	rs8084058-A	0.3861	3E-8	(EA)	0.0844	[0.055-0.114] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
1135	chr18	72178409	72178410	rs8088885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q22.3		rs8088885-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1135	chr18	72179578	72179579	rs734559	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q22.3	CNDP2	rs734559-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
1135	chr18	72209542	72209543	rs17817077	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,367 Icelandic ancestry individuals	NA	18q22.3		rs17817077-A	0.3838	1E-55		0.298994	[0.26-0.34] unit increase	Illumina [7506463] (imputed)	N
1135	chr18	72209542	72209543	rs17817077	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,365 Icelandic ancestry individuals	NA	18q22.3		rs17817077-A	0.3838	2E-69		0.326318	[0.29-0.36] unit increase	Illumina [7506463] (imputed)	N
1135	chr18	72209542	72209543	rs17817077	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	18q22.3	CNDP1	rs17817077-A	0.4055276	5E-15	(EA, Beta-Ala-His dipeptidase)	0.35	[0.26-0.44] unit increase	Affymetrix [509946]	N
1135	chr18	72217552	72217553	rs62099910	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q22.3	CNDP1	rs62099910-A	0.81625	9E-25	(CNDP1, 7870_8_3)	0.32497123	[0.26-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
1135	chr18	72218511	72218512	rs62099911	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	18q22.3	CNDP1	rs62099911-A	0.81625	1E-28	(CNDP1, 5456_59_2)	0.3454256	[0.29-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
1136	chr18	72230611	72230612	rs56042934	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,367 Icelandic ancestry individuals	NA	18q22.3		rs56042934-C	0.1863	6E-25		0.247775	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
1136	chr18	72230611	72230612	rs56042934	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,365 Icelandic ancestry individuals	NA	18q22.3		rs56042934-C	0.1863	6E-22		0.226762	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1136	chr18	72260729	72260729	rs138087875	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	18q22.3	CNDP1	rs138087875-A	NR	4E-7		1.96	percent increase	Affymetrix [8762422] (imputed)	N
1137	chr18	72378390	72378391	rs8088980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q22.3		rs8088980-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1138	chr18	72492688	72492689	rs9947276	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	18q22.3	NR	rs9947276-T	0.72	9E-6		1.39	[1.25-1.53]	Illumina [4058415] (imputed)	N
1138	chr18	72516543	72516544	rs17244039	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	18q22.3	NR	rs17244039-?	NR	2E-6		0.0487	[0.029-0.069] unit increase	Illumina [at least 560000] (imputed)	N
1138	chr18	72535281	72535282	rs11872397	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q22.3		rs11872397-G	0.732	1E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1138	chr18	72535281	72535282	rs11872397	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q22.3	ZNF407	rs11872397-A	0.2599	2E-9		0.014873725	[0.01-0.02] unit decrease	Affymetrix [11514654] (imputed)	N
1138	chr18	72535281	72535282	rs11872397	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q22.3	NR	rs11872397-A	0.253	6E-11		0.0081945	[0.0057-0.0106] unit decrease	NR [9732723] (imputed)	N
1138	chr18	72535281	72535282	rs11872397	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q22.3	NR	rs11872397-A	0.253	5E-9		0.017113948	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1139	chr18	72701940	72701941	rs12456768	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs12456768-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1140	chr18	72773434	72773435	rs35544423	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs35544423-?	NR	8E-9				Affymetrix [NR] (imputed)	N
1140	chr18	72774527	72774528	rs8099215	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs8099215-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1140	chr18	72774608	72774609	rs8089048	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs8089048-?	NR	7E-9				Affymetrix [NR] (imputed)	N
1140	chr18	72776890	72776891	rs2289609	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs2289609-?	NR	5E-9				Affymetrix [NR] (imputed)	N
1140	chr18	72779607	72779608	rs4574012	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs4574012-?	NR	4E-9				Affymetrix [NR] (imputed)	N
1140	chr18	72780113	72780114	rs9951938	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs9951938-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1140	chr18	72782513	72782514	rs906514	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q22.3		rs906514-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1140	chr18	72787045	72787046	rs17056274	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	18q22.3	ZNF407	rs17056274-G	0.01	4E-6		0.658	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
1140	chr18	72835668	72835669	rs79083328	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	18q22.3	RP11-405M12.2	rs79083328-A	0.0195	5E-6		0.2152	[0.12-0.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1140	chr18	72866862	72866863	rs9957684	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	18q22.3	intergenic	rs9957684-T	0.073	2E-7	(men)	0.427	[0.27-0.58] mg/dL increase	Illumina [622468]	N
1141	chr18	72885336	72885337	rs649524	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs649524-A	0.287335	1E-12		0.0657496	[0.046-0.086] decrease	Affymetrix [11014269] (imputed)	N
1141	chr18	72894667	72894668	rs611916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	18q22.3		rs611916-T	0.066904	2E-11		0.030349178	[0.021-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr18	72897160	72897161	rs9948784	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q22.3	NR	rs9948784-G	0.9873229	2E-6	(IGP41)	1.7711	[1.04-2.5] unit decrease	Illumina [~ 2500000] (imputed)	N
1141	chr18	72897160	72897161	rs9948784	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q22.3	NR	rs9948784-G	0.9873089	1E-6	(IGP1)	1.8106	[1.08-2.54] unit decrease	Illumina [~ 2500000] (imputed)	N
1141	chr18	72906959	72906960	rs634687	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	18q22.3		rs634687-G	0.065117299	3E-11				Illumina [7417619] (imputed)	N
1141	chr18	72906959	72906960	rs634687	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q22.3	NR	rs634687-G	0.0651063	7E-16				Affymetrix, Illumina [24588908] (imputed)	N
1141	chr18	72908865	72908869	rs142316985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q22.3	ZADH2	rs142316985-C	0.065934	1E-14		0.03524241	[0.026-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1141	chr18	72910220	72910221	rs658974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	18q22.3	NR	rs658974-T	0.065359	3E-18		0.032804	[0.025-0.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1141	chr18	72911547	72911548	rs632157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q22.3		rs632157-A	NR	8E-14		0.0351	[0.026-0.044] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1141	chr18	72911547	72911548	rs632157	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	18q22.3		rs632157-G	0.934	3E-9				Affymetrix [10369434] (imputed)	N
1141	chr18	72915550	72915551	rs2639990	26910538	Choi SH	2016-02-24	PLoS Genet	Six Novel Loci Associated with Circulating VEGF Levels Identified by a Meta-analysis of Genome-Wide Association Studies.	Vascular endothelial growth factor levels	9541 European ancestry individuals, 1,115 Cilento (founder/genetic isolated) individuals, 897 Ogliastran (founder/genetic isolated) individuals, 1,759 Val Borbera (founder/genetic isolated) individuals	2,141 European ancestry individuals, 659 Sorbian (founder/genetic isolated) individuals	18q22.3	ZADH2	rs2639990-T	0.91	6E-10		0.11	[0.075-0.145] unit increase	Affymetrix, Illumina [6705861] (imputed)	N
1141	chr18	72922966	72922966	rs376375268	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.3	NR	rs376375268-G	0.01394	3E-8	(RIDA)	1.036	NR unit decrease	Illumina [1671387] (imputed)	N
1141	chr18	72960001	72960002	rs116279732	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q22.3	NR	rs116279732-G	0.01568	4E-10	(LRRC59)	0.1046	NR unit increase	Illumina [1671387] (imputed)	N
1141	chr18	72999358	72999359	rs55679337	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18q22.3		rs55679337-T	0.6712	1E-11		0.15529811	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1141	chr18	72999358	72999359	rs55679337	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	18q22.3		rs55679337-T	0.6712	3E-11		0.0965193	[0.066-0.127] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1142	chr18	73017233	73017234	rs12970291	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	18q22.3	TSHZ1	rs12970291-T	0.965	5E-8	(opposite direction)	1.27	[1.16-1.38]	Illumina [up to 6000000] (imputed)	N
1142	chr18	73034150	73034151	rs10460108	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	18q22.3	TSHZ1	rs10460108-A	0.4801	1E-12		0.2141	[0.16-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1142	chr18	73035512	73035513	rs11876000	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	18q22.3	NR	rs11876000-T	NR	5E-9		1.039	[1.03-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1142	chr18	73036164	73036165	rs10460109	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q22.3	TSHZ1	rs10460109-T	0.42	4E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1142	chr18	73040375	73040376	rs1898165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	18q22.3		rs1898165-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1142	chr18	73040375	73040376	rs1898165	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	18q22.3	TSHZ1	rs1898165-A	0.5266	1E-11		0.1774	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1142	chr18	73050333	73050334	rs62090893	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	18q22.3	TSHZ1, C18orf62	rs62090893-G	0.921	3E-7		0.085	[0.052-0.118] unit decrease	Illumina [6150213] (imputed)	N
1142	chr18	73050503	73050504	rs2222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	18q22.3		rs2222-T	NR	3E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1142	chr18	73056277	73056278	rs1025601	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	18q22.3	TSHZ1, SMIM21	rs1025601-C	0.6145	3E-8		1.0220394		Affymetrix [11880941] (imputed)	N
1142	chr18	73062077	73062078	rs8087372	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	18q22.3	NR	rs8087372-?	NR	1E-6		0.0084531	[0.0051-0.0119] unit increase	Affymetrix [805426] (imputed)	N
1142	chr18	73087469	73087470	rs8084144	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		18q22.3	NR	rs8084144-A	NR	9E-6		0.285027	[0.16-0.41] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1142	chr18	73089376	73089377	rs17194666	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	18q22.3	C18orf62	rs17194666-C	0.33	5E-6		0.04	unit increase	Illumina [~ 6300000] (imputed)	N
1142	chr18	73098948	73098949	rs10514168	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	18q22.3	TSHZ1	rs10514168-C	0.854	3E-9		0.047	[0.031-0.062] unit decrease	Illumina [7428049] (imputed)	N
1142	chr18	73114339	73114340	rs7234875	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	18q23	RP11, 321M21.3	rs7234875-T	0.399	6E-14		7.514338	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1142	chr18	73135973	73135974	rs118045675	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	18q23	NR	rs118045675-G	0.9682542	3E-6		1.4084507	[1.22-1.64]	Illumina [8992756] (imputed)	N
1143	chr18	73183460	73183461	rs17211056	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	18q23	SMIM21	rs17211056-?		4E-7	(EA)	0.6488	[0.4-0.9] unit increase	Affymetrix [NR] (imputed)	N
1143	chr18	73192445	73192446	rs1865721	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	18q23	C18orf62	rs1865721-?	NR	5E-6	(High intelligence)	3.9	[2.25-5.55] unit increase	Illumina [795637]	N
1145	chr18	73401649	73401650	rs9952762	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	18q23	intergenic	rs9952762-?	NR	5E-7	(Dominant model)	0.64	unit increase	Illumina [542562]	N
1145	chr18	73424775	73424776	rs7240284	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	18q23		rs7240284-T	0.01	7E-6		1.5	unit increase	Affymetrix [NR] (imputed)	N
1145	chr18	73424775	73424776	rs7240284	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	18q23		rs7240284-T	0.01	4E-6		2.04	unit increase	Affymetrix [NR] (imputed)	N
1145	chr18	73426922	73426923	rs9951002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	18q23	RP11-704C2.1	rs9951002-A	0.233123	2E-9		0.0162451	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1145	chr18	73426922	73426923	rs9951002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q23	RP11-704C2.1	rs9951002-A	0.233123	9E-11		0.017424049	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1145	chr18	73426922	73426923	rs9951002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs9951002-T	0.757915	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
1145	chr18	73426922	73426923	rs9951002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q23	NR	rs9951002-T	0.766325	3E-12		0.016121	[0.012-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1145	chr18	73455752	73455753	rs1544254	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	18q23	NR	rs1544254-G	0.425242	5E-6				Illumina [5378266] (imputed)	N
1145	chr18	73462853	73462854	rs1943199	24532677	Bossini-Castillo L	2014-02-14	Ann Rheum Dis	A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides.	Rheumatoid arthritis (ACPA-negative)	1,148 European ancestry cases, 6,008 European ancestry controls	774 European ancestry cases, 1,079 European ancestry controls	18q23	SMIM21	rs1943199-?		2E-8		1.94	[NR]	Illumina [452367]	N
1145	chr18	73487717	73487718	rs187981089	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	18q23	NR	rs187981089-?	NR	9E-7		0.714884	[0.43-1] unit increase	NR [13958389] (imputed)	N
1145	chr18	73498527	73498528	rs11150911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q23		rs11150911-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1145	chr18	73498527	73498528	rs11150911	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	18q23	LOC339298	rs11150911-A	0.296	7E-6	(EA)	0.015	[0.0084-0.0218] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1145	chr18	73501474	73501475	rs12964145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q23		rs12964145-G	NR	1E-9		0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1145	chr18	73501474	73501475	rs12964145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	18q23		rs12964145-G	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1145	chr18	73507568	73507569	rs12326088	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	intergenic	rs12326088-C	0.467	6E-6	(QUICKl)	0.04	[NR] unit increase	Illumina [899892]	N
1145	chr18	73527635	73527636	rs1017745	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	18q23	intergenic	rs1017745-?	NR	6E-6	(SF6)			Affymetrix [5476100] (imputed)	N
1146	chr18	73536710	73536711	rs9956878	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	intergenic	rs9956878-A	0.427	8E-6	(TC )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1146	chr18	73536710	73536711	rs9956878	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	intergenic	rs9956878-A	0.427	2E-6	(LDL )	0.02	[NR] mg/dL increase	Illumina [899892]	N
1146	chr18	73549962	73549963	rs9959259	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	intergenic	rs9959259-A	0.207	9E-6	(Total glutathione )	0.02	[NR] umol/L increase	Illumina [899892]	N
1146	chr18	73605344	73605345	rs17058466	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	18q23	BC037384	rs17058466-G	0.013	1E-6	(HRTSE)	3.73	[2.22-5.24] unit decrease	Illumina [799713]	N
1146	chr18	73620169	73620170	rs2926621	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	18q23		rs2926621-T	NR	8E-7	(mid-sleep time, weekdays)	0.192	[0.12-0.27] unit decrease	Affymetrix [7141204] (imputed)	N
1147	chr18	73691489	73691490	rs1507462	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	18q23	intergenic	rs1507462-A	0.30443	2E-7		0.044	NR unit decrease	Illumina [33400000] (imputed)	N
1147	chr18	73691489	73691490	rs1507462	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	18q23	intergenic	rs1507462-A	0.304	4E-13		0.054	[0.04-0.069] unit decrease	Illumina [33400000] (imputed)	N
1147	chr18	73697454	73697455	rs11873753	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q23	Intergenic	rs11873753-?		1E-6		1.85	[1.44-2.38]	Illumina [7645193] (imputed)	N
1147	chr18	73700232	73700233	rs78286182	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q23	Intergenic	rs78286182-?		1E-6		1.08	[1.05-1.11]	Illumina [7645193] (imputed)	N
1147	chr18	73702232	73702233	rs35585298	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	18q23	Intergenic	rs35585298-?		4E-6		1.2726	[1.16-1.40]	Illumina [9389922] (imputed)	N
1147	chr18	73712404	73712405	rs71361173	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	18q23	NR	rs71361173-G		3E-6		0.111	[0.064-0.158] SD units decrease	NR [10700000] (imputed)	N
1147	chr18	73725199	73725200	rs7235840	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	18q23	intergenic	rs7235840-T	0.1476	7E-6		0.5571	[0.31-0.8] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1147	chr18	73757905	73757906	rs73973283	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	18q23	intergenic	rs73973283-A	NR	6E-6		0.5633	[0.32-0.81] unit increase	Illumina [9290362] (imputed)	N
1147	chr18	73782635	73782636	rs359770	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	18q23	SMIM21, ZNF516	rs359770-?		4E-6				Illumina [~ 5190000] (imputed)	N
1148	chr18	73850509	73850510	rs1157477	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	18q23	LOC339298	rs1157477-G	0.200	3E-6				Affymetrix [761050]	N
1148	chr18	73855930	73855931	rs10514207	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q23	NR	rs10514207-?	NR	4E-13				Affymetrix [NR]	N
1148	chr18	73896026	73896027	rs9951418	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	18q23	NR	rs9951418-C		6E-6		0.0895	[0.05-0.129] SD units increase	NR [10700000] (imputed)	N
1149	chr18	73972823	73972824	rs182325265	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	18q23		rs182325265-A	0.01412	9E-7		4.14	[2.347-7.302]	Affymetrix [7975321] (imputed)	N
1150	chr18	74070561	74070562	rs1047922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q23		rs1047922-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1150	chr18	74070561	74070562	rs1047922	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	18q23	ZNF516	rs1047922-T	0.8484	1E-12		0.2121	[0.15-0.27] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1150	chr18	74070561	74070562	rs1047922	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	18q23	ZNF516	rs1047922-?	NR	4E-8		0.1001	[0.064-0.136] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1150	chr18	74070561	74070562	rs1047922	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	18q23	ZNF516	rs1047922-T	0.8462	1E-11		0.128	[0.09-0.166] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q23		rs3177609-C	NR	3E-18		0.0387	[0.03-0.047] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q23		rs3177609-C	NR	2E-8		0.0243	[0.016-0.033] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	18q23	ZNF516	rs3177609-C	0.077099	9E-13		0.029620491	[0.021-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q23	ZNF516	rs3177609-C	0.077189	5E-46		0.059308268	[0.051-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q23	ZNF516	rs3177609-C	0.077203	1E-15		0.03329859	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs3177609-C	0.0753973	6E-17				Affymetrix, Illumina [23467995] (imputed)	N
1150	chr18	74071077	74071078	rs3177609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q23	NR	rs3177609-C	0.077556	8E-19		0.031206	[0.024-0.038] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1150	chr18	74071781	74071782	rs4375747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	18q23		rs4375747-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q23		rs72973711-T	NR	4E-14		0.0361	[0.027-0.046] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs72973711-T	0.0651314	4E-16				Affymetrix, Illumina [24649327] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	18q23	NR	rs72973711-T	0.067073	1E-17		0.031751	[0.024-0.039] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs72973711-A	0.93485	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	18q23	NR	rs72973711-T	0.06693	6E-21		0.036483	[0.029-0.044] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q23		rs72973711-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1150	chr18	74072244	74072245	rs72973711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	18q23	ZNF516	rs72973711-T	0.0667	3E-18		0.062905	[0.049-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1150	chr18	74072749	74072755	rs66515764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	18q23	ZNF516	rs66515764-C	0.085394	2E-10		0.02594441	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1150	chr18	74075238	74075239	rs41506447	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	18q23	ZNF516	rs41506447-T	0.846	2E-8		0.101	[0.066-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1150	chr18	74076019	74076020	rs72973714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	18q23	ZNF516	rs72973714-T	0.066632	2E-13		0.03260073	[0.024-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1150	chr18	74076019	74076020	rs72973714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	18q23	ZNF516	rs72973714-T	0.066615	9E-19		0.03946019	[0.031-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1150	chr18	74076019	74076020	rs72973714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs72973714-T	0.0651186	6E-20				Affymetrix, Illumina [23114412] (imputed)	N
1150	chr18	74076019	74076020	rs72973714	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q23	ZNF516	rs72973714-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1150	chr18	74076019	74076020	rs72973714	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	18q23	ZNF516	rs72973714-T	0.0679	5E-15		0.05582844	[0.042-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1150	chr18	74101940	74101941	rs4891159	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	18q23	ZNF516	rs4891159-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1150	chr18	74141189	74141190	rs2554835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs2554835-A	0.3998	9E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1150	chr18	74141189	74141190	rs2554835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q23	Intergenic	rs2554835-A	0.3998	2E-8	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1150	chr18	74145347	74145348	rs71361201	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF516	rs71361201-?	NR	7E-10		1.49355	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1150	chr18	74145347	74145348	rs71361201	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF516	rs71361201-?	NR	2E-10	(male)	1.99658	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1150	chr18	74182974	74182975	rs6565887	23432519	O'Brien RP	2013-02-21	Clin Transplant	A genome-wide association study of recipient genotype and medium-term kidney allograft function.	Renal transplant outcome	263 European ancestry individuals		18q23	ZNF516	rs6565887-G	NR	4E-8	(Five-year creatinine)	0.2924	[NR] unit increase	Illumina [511662]	N
1150	chr18	74183561	74183562	rs7505290	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	18q23	ZNF516	rs7505290-T	NR	6E-6		4.54	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1151	chr18	74192517	74192518	rs62110939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q23		rs62110939-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1151	chr18	74196201	74196202	rs36124222	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	18q23		rs36124222-C	0.44	3E-11		6.65	z score increase	Affymetrix [9061022] (imputed)	N
1151	chr18	74211066	74211067	rs12456640	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	18q23	C18orf65, LINC00908	rs12456640-?		3E-6	(EA)	0.1329451	[0.077-0.189] unit increase	Illumina [13620258] (imputed)	N
1151	chr18	74211066	74211067	rs12456640	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	18q23	C18orf65, LINC00908	rs12456640-?		3E-6	(African American)	0.1329451	[0.077-0.189] unit increase	Illumina [13620258] (imputed)	N
1151	chr18	74231995	74231996	rs17561240	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	18q23	NR	rs17561240-?	NR	4E-11		6.594	NR z score increase	Illumina [at least 830937] (imputed)	N
1151	chr18	74265256	74265257	rs62112924	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	18q23	NR	rs62112924-A	0.033	2E-6		1.188	[0.7-1.67] unit decrease	Illumina [~ 600000] (imputed)	N
1151	chr18	74316613	74316614	rs186084489	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	18q23		rs186084489-?	NR	3E-7		0.315	[-2.61716-3.24716] unit increase	Affymetrix [6423076] (imputed)	N
1152	chr18	74318609	74318610	rs13381277	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	18q23	ZNF516	rs13381277-?	NR	4E-6	(DMFS3)			Illumina [518997]	N
1152	chr18	74352796	74352797	rs9951751	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	18q23	LINC01927, LINC01879	rs9951751-?	NR	3E-6	(TransMeta)			Illumina [3153931] (imputed)	N
1152	chr18	74371131	74371132	rs2055727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q23		rs2055727-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1152	chr18	74374756	74374757	rs61570793	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	18q23	RP11-111H3.3	rs61570793-C	0.0671	2E-6		0.1397	[0.082-0.198] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1152	chr18	74435153	74435154	rs7240206	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment in bipolar disorder	1,639 European ancestry responder cases, 1,059 European ancestry non-responder cases	NA	18q23	LOC105372213	rs7240206-G	0.91	4E-7		1.67	[NR]	NR [> 8000000] (imputed)	N
1153	chr18	74450639	74450640	rs7240382	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	18q23	ZNF236, MBP	rs7240382-A	0.7	2E-6	(DWRT-dr)	0.0931	[0.055-0.131] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1153	chr18	74488279	74488280	rs2406342	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	18q23	ZNF236	rs2406342-T	0.475	2E-6	(Dominant model)	1.697	[1.323-2.177]	Illumina [733202]	N
1153	chr18	74493335	74493336	rs7239352	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	18q23	NR	rs7239352-?	NR	9E-8				Affymetrix [NR]	N
1153	chr18	74504834	74504835	rs9319652	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	18q23	NR	rs9319652-?		4E-6		2.29	[NR]	Illumina [NR] (imputed)	N
1153	chr18	74558998	74558999	rs6565922	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	18q23	NR	rs6565922-C	0.5752	6E-13		0.0279	[0.02-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1153	chr18	74562250	74562251	rs7236466	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	18q23	ZNF236	rs7236466-G	0.38	2E-8				Illumina [5041948] (imputed)	N
1153	chr18	74566540	74566540	rs11381479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	18q23		rs11381479-CA	NR	3E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1154	chr18	74582339	74582340	rs2658746	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	18q23	NR	rs2658746-C	0.3897	1E-10		0.0303	[0.021-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1154	chr18	74591095	74591096	rs180834830	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	18q23	ZNF236	rs180834830-G	NR	6E-6		0.376369	[0.21-0.54] unit decrease	Illumina [13520550] (imputed)	N
1154	chr18	74687050	74687051	rs1789256	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	ZNF236	rs1789256-?	NR	6E-6	(TAG 50:4)	0.1535193	[0.087-0.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1154	chr18	74687050	74687051	rs1789256	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	ZNF236	rs1789256-?	NR	1E-6	(TAG 48:4)	0.16453864	[0.098-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1154	chr18	74698120	74698121	rs72987269	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	18q23	NR	rs72987269-C		8E-6		0.2588	[0.15-0.37] SD units increase	NR [10700000] (imputed)	N
1154	chr18	74701983	74701984	rs470797	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	18q23	NR	rs470797-?		8E-10				NR [7428630] (imputed)	N
1154	chr18	74709288	74709289	rs3794852	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	18q23	NR	rs3794852-?	NR	3E-9			[NR]	NR [1665663]	N
1155	chr18	74715268	74715269	rs470903	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	18q23	MBP	rs470903-?	NR	3E-6	(adjusted for dose, GFR & AST)	5.453	unit increase (EA, Australian cohort)	Illumina [610255]	N
1155	chr18	74735134	74735135	rs11663697	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	18q23	NR	rs11663697-G	0.74	9E-6		13.71	[7.75-19.67] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1155	chr18	74751703	74751704	rs72974809	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	18q23		rs72974809-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1155	chr18	74760014	74760015	rs9962038	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration in never smokers	1,728 individuals	NA	18q23	MBP	rs9962038-T	0.205	3E-6		0.09448	[NR] unit decrease	Illumina [658884]	N
1155	chr18	74767540	74767541	rs180931486	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	18q23	MBP	rs180931486-T	0.9334	6E-6	(EA)			Illumina [NR] (imputed)	N
1155	chr18	74774679	74774680	rs78851735	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	18q23		rs78851735-?	NR	4E-8		3.44569	[2.22-5.35]	NR [NR] (imputed)	N
1155	chr18	74779613	74779614	rs4890887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	18q23	NR	rs4890887-A	0.391626	2E-11		0.013057	[0.0092-0.0169] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1155	chr18	74780807	74780808	rs529447577	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: Travel agency managers (UKB data field 22617_1226)	228 European ancestry cases, 113,613 European ancestry controls	NA	18q23		rs529447577-C	0.001922	1E-9		11.68	[7.91-15.45] unit increase	NR [11842647] (imputed)	N
1155	chr18	74799517	74799518	rs7242091	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	18q23	NR	rs7242091-?	NR	1E-5				NR [18617478] (imputed)	N
1156	chr18	74846114	74846119	rs10577153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q23		rs10577153-C	NR	5E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1156	chr18	74859043	74859044	rs1789110	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	18q23	MBP	rs1789110-?	0.375	4E-7		1.33	[1.19-1.49]	Affymetrix, Illumina [6036699] (imputed)	N
1156	chr18	74952757	74952758	rs8084125	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	GALR1	rs8084125-G	0.133	7E-6	(Sitting height )	0.03	[NR] cm increase	Illumina [899892]	N
1156	chr18	74959124	74959125	rs1893824	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Theta electroencephalogram power	191 European ancestry individuals	NA	18q23	NR	rs1893824-?	NR	2E-6		0.05	NR unit decrease	Affymetrix [388620]	N
1156	chr18	74972026	74972027	rs74540285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q23		rs74540285-T	NR	3E-12		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1156	chr18	74972137	74972138	rs74494415	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q23	GALR1	rs74494415-T	0.0398	2E-17		0.0417	[0.032-0.051] unit decrease	Affymetrix [18391927] (imputed)	N
1156	chr18	74972137	74972138	rs74494415	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q23	GALR1	rs74494415-?	NR	1E-9		0.031463176	[0.021-0.042] unit decrease	Illumina [27896057] (imputed)	N
1156	chr18	74972137	74972138	rs74494415	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q23	NR	rs74494415-?	NR	3E-7	(male)	0.45404	[0.28-0.63] unit decrease	Affymetrix [7794483] (imputed)	N
1156	chr18	74972137	74972138	rs74494415	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	18q23	NR	rs74494415-?	NR	1E-9		0.34214	[0.23-0.45] unit decrease	Affymetrix [7794483] (imputed)	N
1157	chr18	74975827	74975828	rs59951000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q23		rs59951000-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1157	chr18	74976834	74976835	rs59360013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	18q23	GALR1	rs59360013-T	NR	4E-9		0.0421553	[0.028-0.056] unit increase	Affymetrix [321169] (imputed)	N
1157	chr18	74980600	74980601	rs77169818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	18q23	GALR1	rs77169818-T	NR	1E-8		0.0402837	[0.026-0.054] unit increase	Affymetrix [319769] (imputed)	N
1157	chr18	74980600	74980601	rs77169818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	18q23	GALR1	rs77169818-T	NR	6E-9		0.0411646	[0.027-0.055] unit increase	Affymetrix [319769] (imputed)	N
1157	chr18	74987631	74987632	rs2717128	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	18q23	intergenic	rs2717128-G	0.14	1E-6		0.19	[0.11-0.27] unit decrease	Illumina [~ 318327]	N
1157	chr18	74991110	74991111	rs147143810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	18q23		rs147143810-T	NR	3E-11		0.0222	[0.016-0.029] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1157	chr18	74994859	74994860	rs35841477	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q23	NR	rs35841477-C	0.05	6E-9		0.0143994	[0.0095-0.0193] unit decrease	NR [9732723] (imputed)	N
1157	chr18	75028534	75028535	rs77105140	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking initiation (ever regular vs never regular)	67,773 Japanese ancestry ever smoker males, 21,905 Japanese ancestry never smoker males	NA	18q23	GALR1, SALL3	rs77105140-A	0.017	2E-8		1.2820514		Illumina [6108828] (imputed)	N
1157	chr18	75054781	75054782	rs948708	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	18q23	NR	rs948708-?	NR	3E-9				Illumina [7760689] (imputed)	N
1158	chr18	75110359	75110360	rs10469074	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	18q23	NR	rs10469074-?		2E-7	(PCB99)	0.29	[0.17-0.41] unit decrease	Illumina [8736858] (imputed)	N
1158	chr18	75120727	75120728	rs115315965	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs115315965-A	0.0122	9E-9	(SERPINA3)	0.2315	NR unit increase	Illumina [1671387] (imputed)	N
1158	chr18	75189319	75189319	rs35442914	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	18q23	NR	rs35442914-T	0.1935	4E-6		0.1792	[0.10-0.25] unit decrease	Illumina [10677593] (imputed)	N
1158	chr18	75221572	75221573	rs6565990	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	18q23	GALR1, MBP	rs6565990-T	0.5	3E-7	(EA)	0.05	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1159	chr18	75280746	75280747	rs2897639	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	18q23	NR	rs2897639-?		2E-7	(African)			Illumina [~ 5140000] (imputed)	N
1159	chr18	75313446	75313447	rs165149	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	18q23	NFATC1	rs165149-?	NR	4E-13				Illumina [747780]	N
1159	chr18	75313446	75313447	rs165149	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	18q23	NFATC1	rs165149-?	NR	3E-10	(>=14 yr)			Illumina [747780]	N
1159	chr18	75315335	75315336	rs4890971	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	788 Hispanic or Latin American individuals	NA	18q23	GALR1	rs4890971-G	0.427	4E-8		0.07	unit decrease	Illumina [5510858] (imputed)	N
1159	chr18	75341904	75341905	rs165155	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum docosahexaenoic fatty acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	18q23	intergenic	rs165155-C	0.163	7E-6		0.11	[0.063-0.157] unit decrease	Illumina [621723]	N
1160	chr18	75366742	75366743	rs1698919	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	18q23	NR	rs1698919-?	NR	4E-7	(EA)			Illumina [1735619]	N
1160	chr18	75366742	75366743	rs1698919	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	18q23	NR	rs1698919-?	NR	1E-6				Illumina [1735619]	N
1160	chr18	75373446	75373447	rs356150	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q23	BDP1P, LOC100132713	rs356150-C	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1160	chr18	75379216	75379217	rs201993980	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	18q23	GALR1	rs201993980-A	0.0179	9E-9	(HexCer d18:1/16:0)	0.3586	[0.23-0.48] unit increase	Illumina [~ 47000000] (imputed)	N
1160	chr18	75385227	75385228	rs9950779	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	18q23	NR	rs9950779-?	NR	6E-6		704.79034	NR unit decrease	Illumina [2379855]	N
1160	chr18	75386344	75386345	rs2684758	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	18q23	intergenic	rs2684758-G	0.489695676238037	8E-7	(G_Anaerostipes_RNT)	0.118591	[0.071-0.166] unit decrease	Illumina [7711310] (imputed)	N
1160	chr18	75393984	75393985	rs165110	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	18q23	NR	rs165110-?	NR	4E-6		0.0162	[0.0093-0.0231] unit increase	Illumina [~ 7800000] (imputed)	N
1160	chr18	75394571	75394572	rs28731405	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs28731405-C	0.05749	4E-9	(DPYSL2)	0.1356	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75396597	75396598	rs79107804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs79107804-A	0.01916	4E-15	(DCN)	0.06821	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75425844	75425845	rs75715870	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs75715870-C	0.05749	4E-9	(S100A6)	0.05398	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75425844	75425845	rs75715870	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs75715870-C	0.05749	4E-10	(DPYSL2)	0.1444	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75425844	75425845	rs75715870	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs75715870-C	0.05749	3E-8	(CAPN2)	0.02448	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75431537	75431538	rs12966661	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs12966661-T	0.09756	3E-8	(DPYSL2)	0.103	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75451076	75451077	rs11877305	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q23	BDP1P, LOC100132713	rs11877305-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	9E-10	(LPP)	0.00411	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	6E-9	(CAPNS1)	0.01432	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	6E-12	(DPYSL2)	0.1719	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	4E-10	(S100A6)	0.06241	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	3E-9	(YWHAZ)	0.1864	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	3E-9	(CAPN2)	0.02852	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	2E-9	(CSRP1)	0.0161	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75458420	75458421	rs78328874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	18q23	NR	rs78328874-G	0.04704	1E-8	(FHL1)	0.00382	NR unit increase	Illumina [1671387] (imputed)	N
1160	chr18	75460370	75460371	rs116941264	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	18q23	intergenic	rs116941264-A	0.011	7E-6		10.78	[3.833-30.33]	Illumina [7585874] (imputed)	N
1161	chr18	75506983	75506984	rs11151085	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	18q23		rs11151085-G	NR	6E-6		4.538492	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1161	chr18	75605398	75605399	rs9961113	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	18q23	LOC100421527	rs9961113-C	0.403	1E-6	(Allelic model)	2.473	[1.706-3.584]	Illumina [733202]	N
1162	chr18	75638022	75638023	rs12455580	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q23	NR	rs12455580-C	0.662723558771149	2E-6	(IGP65)	0.1716	[0.1-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
1162	chr18	75638022	75638023	rs12455580	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	18q23	NR	rs12455580-C	0.662638724030317	7E-6	(IGP61)	0.1605	[0.091-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
1162	chr18	75653522	75653523	rs11661856	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	18q23	intergenic	rs11661856-?	NR	1E-6	(Interleukin-2 soluble receptor-a)			Affymetrix [2543887] (imputed)	N
1162	chr18	75708165	75708166	rs76734286	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	18q23	NR	rs76734286-T	NR	1E-6	(East Asian)	3.5027	[2.09-4.92] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
1163	chr18	75778755	75778756	rs12962919	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	18q23	NR	rs12962919-C	NR	5E-6		0.3052	[0.18-0.43] SD units decrease	NR [10700000] (imputed)	N
1163	chr18	75794264	75794265	rs72996252	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	18q23	intergenic	rs72996252-A	0.0973442	9E-6		1.51091	[1.25962-1.81233]	NR [7263501] (imputed)	N
1163	chr18	75797075	75797076	rs116986513	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	18q23	NR	rs116986513-C	0.059	7E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1163	chr18	75844246	75844247	rs183974296	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium angulatum abundance in stool	5,959 Finnish ancestry individuals	NA	18q23		rs183974296-T	0.0261163	1E-8		0.247315	[0.16-0.33] unit increase	Illumina [7980478] (imputed)	N
1163	chr18	75858891	75858892	rs2411416	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	18q23	NR	rs2411416-A	NR	4E-6		0.009345	[0.0054-0.0133] unit decrease	Illumina [~ 540852]	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	8E-6	(TAG 50:4)	0.18102348	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	6E-7	(TAG 46:1)	0.20128016	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	6E-6	(TAG 46:0)	0.19602431	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	6E-6	(PC 32:1)	0.18323913	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	5E-6	(TAG 48:1)	0.1847595	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	4E-6	(TAG 52:1)	0.18549828	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	4E-6	(TAG 50:3)	0.18562542	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	4E-6	(DAG 36:1)	0.18876803	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	3E-7	(TAG 48:3)	0.20760393	[0.13-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	3E-7	(TAG 48:2)	0.20589182	[0.13-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	2E-6	(TAG 44:1)	0.19097151	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75860506	75860507	rs1505131	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	SALL3	rs1505131-?	NR	1E-6	(TAG 46:2)	0.19514567	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1163	chr18	75887662	75887663	rs72983727	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q23		rs72983727-C	0.702	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1163	chr18	75889300	75889301	rs28491529	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	18q23	RP11-100K18.1	rs28491529-G	0.2911	2E-10		0.014107862	[0.0098-0.0185] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1163	chr18	75889300	75889301	rs28491529	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	18q23	ENSG00000266213	rs28491529-?	NR	8E-10		0.014192207	[0.0097-0.0187] unit increase	NR [7306098]	N
1164	chr18	75900262	75900263	rs12954372	32433515	Meyers JL	2020-05-20	Mol Psychiatry	A genome-wide association study of interhemispheric theta EEG coherence: implications for neural connectivity and alcohol use behavior.	Theta EEG coherence	6,644 European ancestry individuals, 2,166 African American individuals	NA	18q23	AC107892	rs12954372-A		9E-9	(interhemispheric posterior low theta coherence at P3-O1-P4-02)	5.746	[NR] z score increase	Illumina [6832792] (imputed)	N
1164	chr18	75901506	75901507	rs72985758	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	18q23	NR	rs72985758-T	0.0685	7E-6		0.3273	[0.18-0.47] unit decrease	Illumina [NR] (imputed)	N
1164	chr18	75902734	75902735	rs11081529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q23	Intergenic	rs11081529-T	0.7264	7E-14	(MTAG)	0.0139	[0.01-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1164	chr18	75902734	75902735	rs11081529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs11081529-T	0.7112	5E-16		0.0126	[0.0097-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1164	chr18	75902734	75902735	rs11081529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q23	Intergenic	rs11081529-T	0.7112	2E-17	(MTAG)	0.0123	[0.0096-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1164	chr18	75906771	75906771	rs11281490	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	18q23	LINC01029	rs11281490-A	0.6196	6E-10		0.0619	[0.042-0.082] unit increase	NR [9744772] (imputed)	N
1164	chr18	75907991	75907992	rs7241530	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	18q23	NR	rs7241530-T	0.3591	2E-8		0.01301019	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1164	chr18	75912921	75912922	rs4798896	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	18q23	intergenic	rs4798896-?	NR	4E-6	(Mood symptoms)	0.0917	[NR] unit increase	Affymetrix [696491]	N
1165	chr18	76068751	76068752	rs75808455	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	18q23		rs75808455-?	NR	6E-6		0.6615855	[0.38-0.95] unit decrease	Illumina [9842460] (imputed)	N
1166	chr18	76209702	76209703	rs200394591	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	18q23	Intergenic	rs200394591-?		2E-6		34.5	[20.39-48.61] unit decrease	Illumina [~ 10000000] (imputed)	N
1166	chr18	76210569	76210570	rs73001203	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	18q23	Intergenic	rs73001203-?		3E-6	(male)	0.403	[0.23-0.57] unit decrease	NR [~ 5500000] (imputed)	N
1166	chr18	76229271	76229272	rs77094751	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	18q23	SALL3	rs77094751-G	0.96	6E-7	(BDRBASE, AA)	10.23	[6.25-14.21] unit decrease	Illumina [NR] (imputed)	N
1167	chr18	76342079	76342080	rs7231688	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	18q23	LINC01029, SALL3	rs7231688-A	0.22	4E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
1167	chr18	76378306	76378307	rs4799176	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	18q23	SALL3	rs4799176-C	0.25780000000000003	3E-13		0.362	[0.26-0.46] unit increase	Illumina [8400000] (imputed)	N
1167	chr18	76378306	76378307	rs4799176	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	18q23	SALL3	rs4799176-C	0.2592	2E-15		0.325	[0.24-0.41] unit increase	Illumina [8400000] (imputed)	N
1167	chr18	76378306	76378307	rs4799176	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	18q23	SALL3	rs4799176-C	0.258	4E-12	(EA)	0.305	[0.22-0.39] unit increase	Illumina [8400000] (imputed)	N
1167	chr18	76378306	76378307	rs4799176	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	18q23	SALL3	rs4799176-C	0.2578	3E-13		0.327	[0.24-0.42] unit increase	Illumina [8400000] (imputed)	N
1167	chr18	76395324	76395325	rs72987764	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	18q23	NR	rs72987764-?	NR	3E-6		2.631579	[NR]	Illumina [5326313] (imputed)	N
1167	chr18	76409596	76409597	rs2002842	18668548	Julia A	2008-08-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility.	Rheumatoid arthritis	400 European ancestry cases, 400 European ancestry controls	410 European ancestry cases, 394 European ancestry controls	18q23	SALL3	rs2002842-A	0.49	6E-6		1.61	[NR]	Illumina [299918]	N
1168	chr18	76415449	76415450	rs66591657	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	18q23	intergenic	rs66591657-?	NR	4E-6	(SF7)			Affymetrix [5476100] (imputed)	N
1168	chr18	76431562	76431563	rs4798975	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	18q23		rs4798975-?	NR	7E-6		0.186	unit increase	Illumina [NR] (imputed)	N
1168	chr18	76494591	76494592	rs4573996	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	18q23	intergenic	rs4573996-?	NR	9E-9	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1168	chr18	76494591	76494592	rs4573996	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	18q23	intergenic	rs4573996-?	NR	3E-7	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
1168	chr18	76530269	76530270	rs72992848	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	18q23		rs72992848-G	0.948	4E-6		0.117	[0.068-0.166] unit decrease	Affymetrix [6030650] (imputed)	N
1168	chr18	76535995	76535996	rs7227896	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	18q23	LINC01029, SALL3	rs7227896-C	0.17	7E-7		0.27	unit decrease	Illumina [5600000] (imputed)	N
1169	chr18	76591634	76591635	rs12967884	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	18q23	SALL3	rs12967884-A	0.89	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1169	chr18	76657778	76657779	rs9951602	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	18q23	intergenic	rs9951602-A	0.189	9E-6	(IGF1 bound )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1169	chr18	76662954	76662955	rs28498503	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	18q23	SALL3	rs28498503-T	0.158	7E-6	(HRTSE)	1.03	[0.58-1.48] unit increase	Illumina [799713]	N
1170	chr18	76698026	76698027	rs113740863	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q23	intergenic	rs113740863-G	0.016	3E-6		4.82	[2.34-9.92]	Illumina [1556551]	N
1170	chr18	76742543	76742544	rs1787267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	18q23		rs1787267-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1170	chr18	76742543	76742544	rs1787267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	18q23	NA	rs1787267-C	0.0631	8E-10		0.0216	[0.015-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1170	chr18	76745588	76745589	rs594821	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	18q23	NA	rs594821-T	0.0912	3E-10		0.0191	[0.013-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1170	chr18	76751057	76751058	rs2472640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q23	Intergenic	rs2472640-T	0.7861	1E-8	(MTAG)	0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1170	chr18	76770819	76770820	rs9959454	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	18q23	NR	rs9959454-A	NR	5E-21		1.071	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
1170	chr18	76773972	76773973	rs7241993	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	18q23	NR	rs7241993-C	0.69	2E-18		1.08	[1.06-1.10]	Illumina [20370935] (imputed)	N
1170	chr18	76773972	76773973	rs7241993	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	18q23	SALL3, ATP9B	rs7241993-G	0.7	2E-9		1.09	[1.05-1.12]	Illumina [~ 2600000] (imputed)	N
1171	chr18	76904664	76904665	rs7226934	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	18q23	ATP9B	rs7226934-C	0.16	4E-6		3.354	[1.93-4.78] unit increase	Illumina [NR] (imputed)	N
1171	chr18	76928988	76928989	rs7240419	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	18q23	ATP9B	rs7240419-A	0.23	1E-6		1.52	[1.28-1.79]	Illumina [7033776] (imputed)	N
1171	chr18	76928988	76928989	rs7240419	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia	382 European ancestry GRN mutation carrier cases, 1,146 European ancestry controls	67 GRN mutation carrier European ancestry cases, 143 GRN-negative European ancestry cases, 1,798 European ancestry controls	18q23	ATP9B	rs7240419-A	0.22	6E-6		1.41	[1.21-1.63]	Illumina [7033776] (imputed)	N
1173	chr18	77150976	77150977	rs304930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs304930-C	NR	8E-17		0.0341	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1173	chr18	77150976	77150977	rs304930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs304930-C	NR	2E-17		0.0348	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1173	chr18	77156102	77156103	rs71359461	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		18q23	NFATC1	rs71359461-C	NR	4E-10		0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1173	chr18	77156170	77156171	rs74183647	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Serum creatinine levels	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	18q23	NFATC1	rs74183647-C	0.455	3E-11		0.009	[0.0059-0.0121] unit decrease	Illumina [6288024] (imputed)	N
1173	chr18	77156170	77156171	rs74183647	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Estimated glomerular filtration rate	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	18q23	NFATC1	rs74183647-C	0.455	2E-11		0.0098	[0.0063-0.0133] unit increase	Illumina [6288024] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	18q23		rs8096658-C	0.514391	3E-14		0.0272076	[0.02-0.034] unit decrease	NR [11722792] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	18q23		rs8096658-?	NR	8E-7		0.40672618	[0.24-0.57] ml/min/1.73 m2 decrease	NR [43622178]	N
1173	chr18	77156536	77156537	rs8096658	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	18q23	NFATC1	rs8096658-C	0.512551	2E-10		0.00902376	[0.0062-0.0118] unit increase	Affymetrix [12370749]	N
1173	chr18	77156536	77156537	rs8096658	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	18q23	NFATC1	rs8096658-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	18q23	NFATC1	rs8096658-C	0.558	1E-8		0.523	[0.34-0.7] unit increase	Affymetrix [NR] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	18q23	NFATC1	rs8096658-C	0.5543	7E-81		0.005	[0.0042-0.0058] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	18q23	NFATC1	rs8096658-C	0.5142	4E-60		0.0046	[0.0038-0.0054] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	18q23	NFATC1	rs8096658-C	0.7111	1E-17		0.0072	[0.0056-0.0088] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	18q23	NFATC1	rs8096658-G	0.41	2E-12		1.066098	[1.05-1.09]	Affymetrix, Illumina [9585923] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	18q23	NFATC1	rs8096658-C	0.5917	2E-17		0.0077	[0.0059-0.0095] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	18q23	NFATC1	rs8096658-G	0.3659	8E-45		14.047	NR z score decrease	Illumina [26237160] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	18q23	NFATC1	rs8096658-G	0.38	2E-28		0.701	[0.47-0.93] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q23	NFATC1	rs8096658-C	0.515514	5E-12		0.0131362	[0.0094-0.0169] unit increase	NR [13737936] (imputed)	N
1173	chr18	77156536	77156537	rs8096658	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	18q23	NFATC1	rs8096658-G	NR	1E-8		0.814	[0.54-1.09] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1173	chr18	77158224	77158225	rs549752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	18q23		rs549752-G	0.684172	6E-29		0.0341479	[0.028-0.04] unit decrease	Illumina [13478778] (imputed)	N
1173	chr18	77158224	77158225	rs549752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	18q23		rs549752-G	0.684204	2E-10		0.0230295	[0.016-0.03] unit decrease	Illumina [13478792] (imputed)	N
1173	chr18	77158224	77158225	rs549752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	18q23	NFATC1	rs549752-?	NR	9E-25		0.04214	[0.034-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1173	chr18	77158224	77158225	rs549752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	18q23	NFATC1	rs549752-?	NR	1E-25		0.04186	[0.034-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1173	chr18	77158224	77158225	rs549752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	18q23	NFATC1	rs549752-?	NR	6E-9		0.02266	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	18q23		rs56376587-A	0.513514	2E-9		0.0245679	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	18q23		rs56376587-C	NR	6E-10		0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	18q23		rs56376587-C	NR	3E-104		0.0362	[0.033-0.04] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	18q23		rs56376587-C	NR	4E-9		0.0785	[0.052-0.105] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	18q23		rs56376587-C	NR	8E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	18q23		rs56376587-C	NR	2E-36		0.0249	[0.021-0.029] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	18q23	NFATC1	rs56376587-A	0.545	2E-36		0.674	[0.57-0.78] unit increase	Affymetrix [NR] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	18q23	NFATC1	rs56376587-A	0.554	8E-43		0.005	[0.0042-0.0058] unit increase	Affymetrix [NR] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	18q23	NFATC1	rs56376587-A	0.5142	2E-29	(EA)	0.0046	[0.0038-0.0054] unit increase	Affymetrix [NR] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	18q23	NFATC1	rs56376587-C	0.497548	4E-13		0.046807	[0.035-0.058] unit increase	Illumina [24961484] (imputed)	N
1173	chr18	77160234	77160235	rs56376587	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q23		rs56376587-?	NR	9E-14		0.0148506	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1173	chr18	77160747	77160748	rs118035325	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	18q23	NR	rs118035325-T	0.02226	1E-6		0.4972	[0.3-0.7] unit increase	Illumina [10677593] (imputed)	N
1173	chr18	77161323	77161324	rs117777118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	18q23		rs117777118-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1173	chr18	77162461	77162462	rs657693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q23	NFATC1	rs657693-G	0.360896	5E-17		0.01978735	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1173	chr18	77162524	77162525	rs652730	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	18q23	NFATC1	rs652730-?	NR	5E-6		0.163	[0.085-0.241] unit decrease	Illumina [6319684] (imputed)	N
1173	chr18	77164242	77164243	rs8091180	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	18q23	NR	rs8091180-?	NR	9E-7		0.7353698	[0.44-1.03] unit decrease	Illumina [30341014] (imputed)	N
1173	chr18	77164242	77164243	rs8091180	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	18q23	NFATC1	rs8091180-A	0.56	1E-9		0.006	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1173	chr18	77164765	77164766	rs116014524	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs116014524-T	NR	5E-10		0.0317	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1173	chr18	77164765	77164766	rs116014524	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs116014524-T	NR	4E-10		0.0319	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1173	chr18	77170476	77170477	rs1051978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs1051978-A	NR	6E-16		0.0297	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1173	chr18	77170476	77170477	rs1051978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	18q23	NR	rs1051978-A	NR	7E-18		0.0317	[0.024-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1173	chr18	77171389	77171390	rs141310123	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	18q23	NFATC1	rs141310123-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1173	chr18	77171389	77171390	rs141310123	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	18q23	NFATC1	rs141310123-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1173	chr18	77171389	77171390	rs141310123	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	18q23	NFATC1	rs141310123-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1173	chr18	77171389	77171390	rs141310123	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	18q23	NFATC1	rs141310123-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1173	chr18	77172315	77172316	rs116989867	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	18q23	NR	rs116989867-?	NR	2E-6	(Latino)	1.4136	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1173	chr18	77173978	77173979	rs2002311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	18q23		rs2002311-G	NR	1E-9		0.0565	[0.038-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1173	chr18	77174219	77174220	rs7240256	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	18q23	NFATC1	rs7240256-C	0.317032	1E-9		0.05994282	[0.041-0.079] unit increase	Affymetrix [7288503] (imputed)	N
1173	chr18	77179238	77179239	rs11875260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	18q23		rs11875260-G	NR	3E-8		0.0751	[0.049-0.102] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1173	chr18	77182835	77182836	rs60389750	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	18q23	NFATC1	rs60389750-T	0.3139	1E-16		0.0175	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
1173	chr18	77195812	77195813	rs11664153	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	ATP9B	rs11664153-?	NR	3E-6	(valine)	0.24553396	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1173	chr18	77198330	77198331	rs7230704	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	18q23	NFATC1	rs7230704-A	0.221148	7E-10		0.119432	[0.081-0.157] unit decrease	Affymetrix [7288503] (imputed)	N
1174	chr18	77209014	77209015	rs2278801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	18q23		rs2278801-G	NR	5E-25		0.0138	[0.011-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1174	chr18	77211174	77211175	rs2290154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q23	NFATC1	rs2290154-C	NR	2E-8		0.0182862	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
1174	chr18	77215563	77215564	rs73007702	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	18q23	NR	rs73007702-G	0.02	8E-6		1.32	[1.2-1.44]	Illumina [8468885] (imputed)	N
1174	chr18	77217631	77217632	rs2280054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	18q23		rs2280054-G	NR	3E-14		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1174	chr18	77218854	77218855	rs11663201	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	18q23	NFATC1	rs11663201-G	0.68544	4E-15		0.00197434	[0.0015-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
1174	chr18	77218854	77218855	rs11663201	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	18q23	NFATC1	rs11663201-G	0.69	2E-12		7.04	z-score increase	Affymetrix [4311822] (imputed)	N
1174	chr18	77218925	77218926	rs11660937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	18q23		rs11660937-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1174	chr18	77220615	77220616	rs7236492	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	18q23	NFATC1	rs7236492-?	NR	1E-7	(subset analysis)			Illumina [130052]	N
1174	chr18	77220615	77220616	rs7236492	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q23	NFATC1, TST	rs7236492-G	0.85	1E-8	(EA)	1.0835682		Affymetrix, Illumina [~ 9000000] (imputed)	N
1174	chr18	77220615	77220616	rs7236492	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	18q23	NFATC1, TST	rs7236492-G	0.85	9E-9	(EA)	1.1047964	[1.07-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1174	chr18	77224191	77224192	rs9958919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q23	NR	rs9958919-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1174	chr18	77225153	77225154	rs8090312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	18q23		rs8090312-G	0.394244	7E-9		0.0119548	[0.0079-0.016] unit decrease	Illumina [13479295] (imputed)	N
1174	chr18	77225153	77225154	rs8090312	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	18q23	NFATC1	rs8090312-?	NR	4E-9		0.017206382	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
1174	chr18	77231945	77231946	rs143068679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	18q23		rs143068679-T	NR	2E-8		0.0498	[0.033-0.067] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1174	chr18	77232203	77232204	rs3786201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q23	NFATC1	rs3786201-G	NR	5E-10		0.0215608	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1174	chr18	77232708	77232709	rs160189	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	18q23	NFATC1	rs160189-G	0.3158	8E-15		0.03051198	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1174	chr18	77234208	77234209	rs140439280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q23	NFATC1	rs140439280-C	0.320654	2E-10		0.017762138	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr18	77236258	77236259	rs112187368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	18q23		rs112187368-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1174	chr18	77236275	77236276	rs6506771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	18q23	NFATC1	rs6506771-A	NR	5E-8		0.0175932	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1174	chr18	77238077	77238078	rs111354805	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q23	NR	rs111354805-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1174	chr18	77243924	77243925	rs142456823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs142456823-T	0.0988107	3E-15				Affymetrix, Illumina [23472807] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q23	NFATC1	rs78015143-G	0.900245	2E-14		0.0239493	[0.018-0.03] unit decrease	NR [13737936] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q23		rs78015143-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q23		rs78015143-?	NR	3E-17		0.0285075	[0.022-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q23	NFATC1	rs78015143-G	0.902217	7E-7	(women)	0.0385414	[0.023-0.054] unit decrease	NR [17166351] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q23	NFATC1	rs78015143-G	0.901893	2E-11		0.0365443	[0.025-0.048] unit decrease	NR [17166351] (imputed)	N
1174	chr18	77248690	77248691	rs78015143	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	18q23	NFATC1	rs78015143-G	0.901522	6E-6	(men)	0.0384316	[0.022-0.055] unit decrease	NR [17166351] (imputed)	N
1174	chr18	77250668	77250669	rs111626441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	18q23	NR	rs111626441-A	0.096614	9E-17		0.027778	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1174	chr18	77253002	77253003	rs73498309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	18q23	NFATC1	rs73498309-T	0.0966939999999999	2E-13		0.027607124	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr18	77253865	77253866	rs454854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	18q23	NFATC1	rs454854-C	0.679079	1E-9		0.0145878885	[0.0099-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr18	77253865	77253866	rs454854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	18q23	NFATC1	rs454854-C	0.679095	2E-10		0.015260567	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr18	77268219	77268219	rs142088680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q23	NFATC1	rs142088680-TGGAG	0.085515	1E-12		0.032047395	[0.023-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1174	chr18	77271668	77271669	rs111304587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs111304587-T	0.918164	6E-33				Affymetrix, Illumina [17210439] (imputed)	N
1174	chr18	77271668	77271669	rs111304587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	18q23	NR	rs111304587-T	0.915447	2E-36		0.04367	[0.037-0.05] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1174	chr18	77273177	77273178	rs28627209	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	18q23	NFATC1	rs28627209-G	NR	2E-6		1.82	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1174	chr18	77279411	77279412	rs56277523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	18q23	NFATC1	rs56277523-C	0.068095	1E-18		0.03991103	[0.031-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1174	chr18	77291378	77291379	rs372464	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	18q23	NR	rs372464-G	NR	5E-6		0.8232	NR	Illumina [at least 560000] (imputed)	N
1174	chr18	77301141	77301142	rs838046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	18q23		rs838046-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1174	chr18	77304744	77304745	rs1660131	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	18q23	NR	rs1660131-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1174	chr18	77313189	77313190	rs188748322	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	18q23	NR	rs188748322-?	NR	8E-6		14.415	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1174	chr18	77322145	77322146	rs12327286	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	CTDP1	rs12327286-?	NR	9E-6	(TAG 52:1)	0.19574451	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1174	chr18	77322145	77322146	rs12327286	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	18q23	CTDP1	rs12327286-?	NR	9E-6	(TAG 46:1)	0.19518033	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1174	chr18	77328614	77328615	rs75000611	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	18q23	NR	rs75000611-?	NR	7E-7	(Native Hawaiian)	0.995	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1175	chr18	77342655	77342656	rs12373406	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	18q23		rs12373406-T	NR	5E-6		6.4937	[3.78-9.21] unit increase	Illumina [NR] (imputed)	N
1175	chr18	77346681	77346682	rs515754	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	18q23		rs515754-?	NR	5E-6	(adjusted)	0.02	[0.01-0.02] unit increase	Illumina [7066534] (imputed)	N
1175	chr18	77349634	77349635	rs3848474	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	18q23	LOC284241	rs3848474-G	0.556875	1E-15		0.0150011	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1175	chr18	77349634	77349635	rs3848474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	18q23		rs3848474-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1175	chr18	77353224	77353224	rs768306493	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	18q23		rs768306493-?	NR	5E-12		0.0143547	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1175	chr18	77356163	77356164	rs139188551	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	18q23	NR	rs139188551-T	0.010925	1E-6		11.35173	[6.79-15.91] unit increase	Illumina [9469131] (imputed)	N
1175	chr18	77357222	77357223	rs532611140	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	18q23	NFATC1	rs532611140-C	NR	8E-7				Affymetrix, Illumina [12061510] (imputed)	N
1175	chr18	77357222	77357223	rs532611140	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	18q23	NFATC1	rs532611140-C	NR	1E-6		1.47	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1175	chr18	77374320	77374321	rs9949526	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	18q23	LOC100127987, FLJ25715	rs9949526-A	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
1175	chr18	77374883	77374884	rs9951646	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	18q23	LOC105372228	rs9951646-?		8E-6				NR [7405822] (imputed)	N
1175	chr18	77377921	77377929	rs137901696	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	18q23	CTDP1, NFATC1	rs137901696-?	0.155	5E-10		0.05	[0.034-0.066] unit increase	Illumina [7358575] (imputed)	N
1175	chr18	77386911	77386912	rs118075465	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	18q23	LOC284241	rs118075465-A	0.147	1E-10		1.14	[1.1-1.18]	Illumina [11270530] (imputed)	N
1175	chr18	77392378	77392379	rs7233060	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	18q23	CTDP1, CTD	rs7233060-?	NR	3E-7	(Positive symptoms)	0.1225	[NR] unit increase	Affymetrix [696491]	N
1175	chr18	77409230	77409231	rs34791241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	18q23		rs34791241-C	NR	4E-19		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1175	chr18	77421099	77421100	rs9963625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	18q23		rs9963625-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1175	chr18	77458643	77458644	rs522180	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	18q23	CTDP1	rs522180-T	0.353	1E-11		0.0161	[0.011-0.021] unit increase	Illumina [~ 250000] (imputed)	N
1176	chr18	77464169	77464170	rs3786228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	18q23	CTDP1	rs3786228-C	0.383231	4E-21		0.021590747	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1176	chr18	77472435	77472436	rs12458462	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	18q23	CTDP1	rs12458462-A	0.3692	8E-9		0.02135211	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1176	chr18	77476130	77476131	rs2007483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	18q23	CTDP1	rs2007483-A	0.381545	2E-28		0.025297422	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1176	chr18	77476130	77476131	rs2007483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	18q23	NR	rs2007483-A	0.37675	6E-32				Affymetrix, Illumina [23467995] (imputed)	N
1176	chr18	77476130	77476131	rs2007483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	18q23	NR	rs2007483-A	0.382309	2E-34		0.023714	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1176	chr18	77487393	77487394	rs74641711	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	18q23	NR	rs74641711-?	NR	6E-7	(EA)	1.74	unit decrease	Illumina [at least 4700000] (imputed)	N
1176	chr18	77494019	77494020	rs74429170	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs74429170-A	0.9542	2E-8	(conditional-joint)	0.0189	[0.012-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1176	chr18	77495871	77495872	rs149325996	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	18q23	CTDP1	rs149325996-A	0.013	4E-7	(Corticosteroids (nasal) [R01AD])	4.55		Illumina [16500000] (imputed)	N
1176	chr18	77511267	77511268	rs142014757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs142014757-A	0.8085	2E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1176	chr18	77529843	77529844	rs545853	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	18q23	NFATC1	rs545853-A	0.462352	3E-8		5.55	z score decrease	NR [10847151] (imputed)	N
1176	chr18	77563333	77563334	rs11665567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	18q23		rs11665567-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1176	chr18	77563333	77563334	rs11665567	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	18q23	NR	rs11665567-?	NR	6E-7		5.003	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1176	chr18	77567760	77567761	rs143283559	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q23	ENSG00000267780	rs143283559-T	NR	2E-8		0.019025618	[0.012-0.026] unit increase	Affymetrix [NR]	N
1176	chr18	77567762	77567763	rs151286028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	18q23		rs151286028-A	NR	7E-10		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1176	chr18	77567762	77567763	rs151286028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	18q23		rs151286028-A	NR	5E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1176	chr18	77573547	77573548	rs4799088	20801717	Shatunov A	2010-10-01	Lancet Neurol	Chromosome 9p21 in sporadic amyotrophic lateral sclerosis in the UK and seven other countries: a genome-wide association study.	Amyotrophic lateral sclerosis	4,857 European ancestry cases, 8,987 European ancestry controls	NA	18q23	NR	rs4799088-?	NR	9E-6		1.15	[NR]	Illumina [227475]	N
1176	chr18	77574373	77574374	rs71367544	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	18q23	NR	rs71367544-T	0.203	6E-14		0.0100852	[0.0075-0.0127] unit increase	NR [9732723] (imputed)	N
1176	chr18	77574373	77574374	rs71367544	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	18q23	NR	rs71367544-T	0.203	9E-11		0.02055216	[0.014-0.027] unit increase	NR [~ 10000000] (imputed)	N
1176	chr18	77574373	77574374	rs71367544	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	18q23	NR	rs71367544-T	0.21	1E-9		0.0109185	[0.0074-0.0144] unit decrease	NR [9732723] (imputed)	N
1176	chr18	77575612	77575613	rs56775891	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q23	KCNG2	rs56775891-T	NR	3E-6	(EA)	1.0592	[1.04-1.08]	Illumina [6627481] (imputed)	N
1176	chr18	77575612	77575613	rs56775891	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs56775891-T	0.2751	7E-18	(conditional-joint)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1176	chr18	77575612	77575613	rs56775891	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q23	KCNG2	rs56775891-T	NR	2E-8		1.058	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1176	chr18	77575612	77575613	rs56775891	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	18q23	NR	rs56775891-T	NR	9E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1176	chr18	77575870	77575871	rs34945223	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	18q23	NR	rs34945223-G	0.264600317104439	2E-8		0.005810637	[0.0038-0.0079] unit increase	NR [NR]	N
1176	chr18	77575870	77575871	rs34945223	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	18q23	NR	rs34945223-G	0.264600317104439	2E-8		0.009511384	[0.0062-0.0128] unit increase	NR [NR]	N
1176	chr18	77575870	77575871	rs34945223	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	18q23	NR	rs34945223-G	0.264600317104439	2E-8		0.0061245887	[0.004-0.0083] unit increase	NR [NR]	N
1176	chr18	77575870	77575871	rs34945223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	18q23		rs34945223-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1176	chr18	77576336	77576337	rs71367545	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	18q23		rs71367545-G	0.791	1E-9		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1176	chr18	77576336	77576337	rs71367545	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	18q23	KCNG2	rs71367545-A	0.2107	4E-9		0.015605067	[0.01-0.021] unit increase	Affymetrix [11514654] (imputed)	N
1176	chr18	77576336	77576337	rs71367545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	18q23		rs71367545-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1176	chr18	77578190	77578191	rs11663602	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q23	NR	rs11663602-?	NR	1E-10		1.06056	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1176	chr18	77578190	77578191	rs11663602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs11663602-A	0.2761	9E-17		0.013	[0.0099-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1176	chr18	77578190	77578191	rs11663602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q23	Intergenic	rs11663602-A	0.2761	3E-18	(MTAG)	0.0128	[0.0099-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1176	chr18	77578985	77578986	rs11664298	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	18q23	KCNG2	rs11664298-A	0.2101	1E-8		0.016577313	[0.011-0.022] unit increase	Affymetrix [11515109] (imputed)	N
1176	chr18	77578985	77578986	rs11664298	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	18q23	ENSG00000267780	rs11664298-A	NR	4E-10		0.023152953	[0.016-0.03] unit decrease	Affymetrix [NR]	N
1176	chr18	77579772	77579773	rs7236339	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	18q23	KCNG2	rs7236339-G	0.771353	4E-16		0.0201137	[0.015-0.025] unit increase	NR [16516521] (imputed)	N
1176	chr18	77579772	77579773	rs7236339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	18q23	Intergenic	rs7236339-A	0.2149	7E-10	(MTAG)	0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1176	chr18	77579772	77579773	rs7236339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	18q23	Intergenic	rs7236339-A	0.2149	2E-15	(MTAG)	0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1176	chr18	77579772	77579773	rs7236339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	18q23	Intergenic	rs7236339-A	0.2252	2E-12	(MTAG)	0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1176	chr18	77580711	77580712	rs7241572	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	18q23		rs7241572-G	0.801	1E-22		0.016	[0.012-0.02] unit decrease	NR [NR] (imputed)	N
1176	chr18	77580711	77580712	rs7241572	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	18q23	NR	rs7241572-A	NR	7E-9		5.795	NR z score increase	NR [NR]	N
1176	chr18	77580711	77580712	rs7241572	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	18q23	NR	rs7241572-A	0.2047	3E-11		0.034387253	[0.024-0.044] unit increase	NR [NR]	N
1176	chr18	77580711	77580712	rs7241572	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	18q23	NR	rs7241572-A	0.201	3E-13		1.02	[1.015-1.026]	NR [8098588] (imputed)	N
1177	chr18	77622878	77622879	rs28735056	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	18q23	NR	rs28735056-?	NR	1E-12		1.0655642	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1177	chr18	77622878	77622879	rs28735056	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	18q23	KCNG2	rs28735056-G	NR	5E-9		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
1177	chr18	77622878	77622879	rs28735056	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	18q23	KCNG2	rs28735056-G	NR	5E-10		1.0626993	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1177	chr18	77622995	77622996	rs11665111	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	18q23	NR	rs11665111-?	NR	1E-8		1.09		Affymetrix, Illumina [9938587] (imputed)	N
1177	chr18	77624478	77624479	rs62103177	24143882	Gelernter J	2013-10-19	Biol Psychiatry	Genome-wide association study of opioid dependence: multiple associations mapped to calcium and potassium pathways.	Opioid sensitivity	1,383 European ancestry cases, 996 European ancestry controls, 683 African American cases, 2,635 African American controls	2,116 European ancestry individuals, 4,496 African American individuals	18q23	KCNG2	rs62103177-?	0.06	4E-10	(AA)			Illumina [988306]	N
1177	chr18	77627949	77627950	rs12970264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs12970264-A	0.4386	2E-9		0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1177	chr18	77634275	77634276	rs62103198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	18q23		rs62103198-T	0.9087	3E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1177	chr18	77659552	77659553	rs75339189	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	18q23	Intergenic	rs75339189-?		3E-6		1.1	[1.05-1.14]	Illumina [7645193] (imputed)	N
1177	chr18	77663862	77663863	rs12928	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	18q23	KCNG2, PQLC1	rs12928-G	0.354006	4E-7		0.759	[0.683 - 0.844]	Illumina [5397362] (imputed)	N
1177	chr18	77688123	77688124	rs55642704	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	18q23	NR	rs55642704-?	NR	4E-11		1.09		Affymetrix, Illumina [9938587] (imputed)	N
1177	chr18	77716170	77716171	rs11662586	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	18q23	NR	rs11662586-?	NR	9E-6		3.632	[2.1-5.17] unit decrease	Illumina [498648]	N
1177	chr18	77722453	77722454	rs62101232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	18q23		rs62101232-C	NR	1E-8		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1177	chr18	77724725	77724726	rs8095764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	18q23	Intergenic	rs8095764-A	0.814	4E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1179	chr18	77950447	77950448	rs1039257158	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	18q23		rs1039257158-T	6.0E-4	7E-9		3.6244407	[2.346169477-5.599156781]	Affymetrix, Illumina [NR] (imputed)	N
1179	chr18	77984344	77984345	rs12373373	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	18q23	NR	rs12373373-T	0.3977	3E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
586	chr19	232519	232520	rs201548075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.3		rs201548075-C	0.75905	3E-8		0.0298992	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
586	chr19	245630	245631	rs67286684	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.3		rs67286684-C	0.319608	3E-8		0.0256284	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
586	chr19	245630	245631	rs67286684	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.3		rs67286684-C	0.319608	4E-8		0.0247102	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
587	chr19	294945	294946	rs4897936	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	19p13.3	NR	rs4897936-?	NR	6E-6	(AA)	15.79	[13.71-17.87]	Illumina [905956]	N
587	chr19	304878	304879	rs72982400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	CTD-3113P16.5	rs72982400-C	0.2825	2E-9		0.0147554325	[0.0099-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
587	chr19	312019	312020	rs8104600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8104600-G	0.358135	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
587	chr19	312019	312020	rs8104600	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs8104600-G	0.315509	9E-12		0.015095	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
587	chr19	320891	320892	rs117357201	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	19p13.3	MIER2	rs117357201-A	0.0248	6E-6		0.1288	[0.073-0.184] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
587	chr19	335723	335724	rs192228650	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	19p13.3	MIER2	rs192228650-A	0.0043	2E-6		0.3254	[0.19-0.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
587	chr19	348742	348743	rs6510725	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	19p13.3	MIER2	rs6510725-?	NR	3E-6	(Dominant model)			Affymetrix [271817]	N
588	chr19	401713	401714	rs7508251	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	19p13.3	NR	rs7508251-?	NR	2E-7		0.2321	NR	Illumina [802276]	N
588	chr19	406933	406934	rs12978500	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	C2CD4C	rs12978500-C	0.274	1E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
588	chr19	418506	418507	rs12610836	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	19p13.3	NR	rs12610836-?	NR	7E-7		0.4359	[0.27-0.6] unit increase	Illumina [at least 560000] (imputed)	N
588	chr19	422170	422171	rs201010410	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	19p13.3	SHC2	rs201010410-C	7.76706526640134E-4	1E-6		0.2909573	[0.17-0.41] unit increase	Affymetrix, Illumina [at least 228985]	N
588	chr19	422170	422171	rs201010410	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	19p13.3	SHC2	rs201010410-C	0.001	1E-6		0.2945	[0.18-0.41] unit increase	Affymetrix, Illumina [at least 228985]	N
588	chr19	440597	440598	rs79628497	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs79628497-T	0.01394	2E-9	(MYO1B)	0.1322	NR unit increase	Illumina [1671387] (imputed)	N
588	chr19	468869	468870	rs56666294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	ODF3L2	rs56666294-G	0.74148	3E-9		0.015589679	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
588	chr19	516729	516730	rs143423902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	TPGS1	rs143423902-C	0.038751	1E-11		0.04148884	[0.03-0.053] unit increase	Affymetrix [93095623] (imputed)	N
589	chr19	531114	531115	rs16989724	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	GZMM	rs16989724-T	0.935	4E-16	(Granzyme M, GZMM.5704.74.3)	0.43	[0.33-0.53] unit increase	Affymetrix [10572788] (imputed)	N
589	chr19	561795	561796	rs76360971	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19p13.3		rs76360971-?	NR	1E-10				Affymetrix [NR] (imputed)	N
589	chr19	572670	572671	rs201850688	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	19p13.3	BSG	rs201850688-G	NR	9E-6		1.804889	[1.39-2.34]	Illumina [241551]	N
589	chr19	577781	577782	rs144824657	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	19p13.3	NR	rs144824657-T	0.01631	1E-6		3.521	[2.042-6.072]	Illumina [274400]	N
589	chr19	597770	597771	rs113681868	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HCN2	rs113681868-?	NR	4E-8	(female)	2.50135	[NR] unit decrease	Affymetrix [NR] (imputed)	N
589	chr19	603831	603832	rs56180027	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19p13.3	NR	rs56180027-T	0.099	3E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
589	chr19	611320	611321	rs59027729	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	19p13.3		rs59027729-A	0.014	4E-8		1.9	[1.51-2.39]	Illumina [9962324] (imputed)	N
589	chr19	637908	637909	rs62134260	34834357	Velasco-Ruiz A	2021-11-16	Pharmaceutics	<i>POLRMT</i> as a Novel Susceptibility Gene for Cardiotoxicity in Epirubicin Treatment of Breast Cancer Patients.	Anthracycline-induced cardiotoxicity in breast cancer	45 European ancestry cases, 90 European ancestry controls	77 European ancestry individuals	19p13.3		rs62134260-?	NR	7E-6		4.0	[2.2-7.3]	Illumina [725785] (imputed)	N
590	chr19	656700	656701	rs4919881	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	19p13.3	RNF126	rs4919881-T	0.155	8E-7		0.027	[0.017-0.037] unit increase	Affymetrix [~ 10446505] (imputed)	N
590	chr19	658012	658013	rs1009628	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	19p13.3	RNF126	rs1009628-?	NR	1E-7		0.027	[0.017-0.037] SD units decrease	Affymetrix [13995214] (imputed)	N
590	chr19	664277	664278	rs4919883	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	RNF126	rs4919883-T	0.8137	7E-10		0.1668	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
590	chr19	670233	670234	rs7250835	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19p13.3	AC004156.3	rs7250835-T	0.1662	2E-14		0.1888	[0.14-0.24] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
590	chr19	672168	672169	rs34668346	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	19p13.3		rs34668346-G	0.477	1E-103		0.379515	[0.35-0.41] unit decrease	Illumina [7506463] (imputed)	N
590	chr19	672168	672169	rs34668346	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs34668346-A	0.512729	9E-10		0.00515211	[0.0035-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
590	chr19	672168	672169	rs34668346	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs34668346-A	0.512729	1E-6		0.00449293	[0.0026-0.0064] unit increase	Affymetrix [16582965] (imputed)	N
590	chr19	677645	677646	rs62134282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.3	NR	rs62134282-T	0.500135	6E-10		0.00658291	[0.0043-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
590	chr19	677645	677646	rs62134282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.3	NR	rs62134282-T	0.500135	7E-9		0.00692715	[0.0045-0.0094] unit increase	Affymetrix [16582614] (imputed)	N
590	chr19	689589	689590	rs9304936	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRSS57	5,358 Icelandic ancestry individuals	NA	19p13.3		rs9304936-C	0.3049	2E-226		0.595023	[0.56-0.63] unit decrease	Illumina [7506463] (imputed)	N
590	chr19	689589	689590	rs9304936	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	PRSS57	rs9304936-G	0.71453125	7E-107	(PRSS57, 8351_17_3)	0.59879845	[0.55-0.65] unit increase	Illumina [> 1000000] (imputed)	N
590	chr19	710651	710652	rs763250940	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	19p13.3		rs763250940-?	NR	5E-6		0.11053436	[0.063-0.158] unit increase	Illumina [9939936] (imputed)	N
590	chr19	713131	713132	rs34737303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs34737303-T	0.1399	2E-8	(MTAG)	0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr19	713147	713148	rs34802460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.3	Intergenic	rs34802460-T	0.2248	3E-9	(MTAG)	0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr19	713147	713148	rs34802460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19p13.3	Intergenic	rs34802460-T	0.2248	5E-8		0.0192	[0.012-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
590	chr19	719801	719802	rs2238557	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.3	NR	rs2238557-?	NR	3E-7		5.135	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr19	725457	725458	rs36053727	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	19p13.3	PALM	rs36053727-G	0.5682	9E-6		0.0047	[0.0027-0.0067] unit increase	Affymetrix [~ 7740000] (imputed)	N
590	chr19	727400	727401	rs77432625	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	19p13.3	NR	rs77432625-G	NR	2E-9		0.03706	[0.025-0.049] unit increase	Affymetrix [10847151] (imputed)	N
590	chr19	743361	743362	rs116962250	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	19p13.3	PALM	rs116962250-A	0.0383479	6E-9		5.829	unit increase	NR [10847151] (imputed)	N
590	chr19	783518	783519	rs11669836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.3	NR	rs11669836-A	NR	2E-13		0.0256	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
591	chr19	788176	788177	rs11881383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	AC006273.7, AC006273.5	rs11881383-T	0.121378	1E-13		0.025336292	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	789453	789454	rs10405462	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.3	AC006273.7, AC006273.5	rs10405462-C	0.298226	2E-9		0.0147068845	[0.0099-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	795456	795457	rs351973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs351973-?	NR	1E-10				NR [~ 8900000] (imputed)	N
591	chr19	806255	806256	rs351978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19p13.3		rs351978-G	NR	7E-11		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
591	chr19	806255	806256	rs351978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19p13.3		rs351978-G	NR	2E-8		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
591	chr19	806255	806256	rs351978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	19p13.3		rs351978-G	NR	3E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
591	chr19	806255	806256	rs351978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.3		rs351978-G	NR	1E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
591	chr19	806255	806256	rs351978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.3		rs351978-G	NR	8E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
591	chr19	806255	806256	rs351978	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.3	PTBP1	rs351978-G	0.58	3E-8		5.54	z-score increase	Affymetrix [4312306] (imputed)	N
591	chr19	806672	806673	rs351976	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	AZU1	rs351976-T	0.70921875	1E-15	(AZU1, 2751_16_2)	0.21643028	[0.16-0.27] unit increase	Illumina [> 1000000] (imputed)	N
591	chr19	807441	807442	rs123698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.3		rs123698-C	NR	5E-44		0.0315	[0.027-0.036] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
591	chr19	807441	807442	rs123698	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19p13.3	PTBP1	rs123698-?	NR	4E-9		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [21347608] (imputed)	N
591	chr19	807441	807442	rs123698	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19p13.3	PTBP1	rs123698-?	NR	2E-10		0.0027	[0.0017-0.0037] unit decrease	Affymetrix [21347608] (imputed)	N
591	chr19	807441	807442	rs123698	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.3	MIR4745	rs123698-G	0.395884	7E-53		0.00796644	[0.0069-0.009] unit decrease	Affymetrix [13995440] (imputed)	N
591	chr19	807441	807442	rs123698	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19p13.3	MIR4745	rs123698-G	0.395876	2E-10		0.00262579	[0.0018-0.0034] unit decrease	Affymetrix [13995440] (imputed)	N
591	chr19	807441	807442	rs123698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	NR	8E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
591	chr19	807441	807442	rs123698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	NR	2E-43		0.034	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
591	chr19	807441	807442	rs123698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	NR	9E-10		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
591	chr19	807441	807442	rs123698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	NR	4E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
591	chr19	807441	807442	rs123698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	PTBP1	rs123698-C	0.604607	7E-23		0.022145543	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	807441	807442	rs123698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	PTBP1	rs123698-C	0.604723	5E-10		0.014053412	[0.0096-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	807441	807442	rs123698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	PTBP1	rs123698-C	0.604603	4E-24		0.024165	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	807441	807442	rs123698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	PTBP1	rs123698-C	0.604622	3E-25		0.024775004	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	807441	807442	rs123698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	0.619003	1E-47				Affymetrix, Illumina [24653286] (imputed)	N
591	chr19	807441	807442	rs123698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.3	NR	rs123698-C	0.606715	3E-46		0.028592	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
591	chr19	807441	807442	rs123698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs123698-C	0.619035	2E-53				Affymetrix, Illumina [24558453] (imputed)	N
591	chr19	807441	807442	rs123698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19p13.3	NR	rs123698-C	0.606702	4E-52		0.030454	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
591	chr19	807441	807442	rs123698	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.3	PPAP2C, PTBP1, LPPR3	rs123698-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
591	chr19	807441	807442	rs123698	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	19p13.3	PTBP1	rs123698-G	0.4	1E-13		0.0065	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
591	chr19	807441	807442	rs123698	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.3	NR	rs123698-G	0.396341	1E-9		0.0133415	[0.0091-0.0176] unit increase	NR [NR]	N
591	chr19	807441	807442	rs123698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs123698-?	NR	5E-27				NR [~ 8900000] (imputed)	N
591	chr19	808585	808586	rs13169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	PTBP1	rs13169-G	0.138608	2E-13		0.024764325	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	808585	808586	rs13169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	PTBP1	rs13169-G	0.138628	5E-16		0.027285634	[0.021-0.034] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	809731	809732	rs351995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs351995-?	NR	1E-30				NR [~ 8900000] (imputed)	N
591	chr19	810411	810412	rs180712105	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs180712105-?	NR	7E-11		0.0667464	[0.046-0.088] unit decrease	Affymetrix [20259828] (imputed)	N
591	chr19	815085	815086	rs351988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	LPPR3	rs351988-G	0.565961	5E-9		0.013457961	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	815085	815086	rs351988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	LPPR3	rs351988-G	0.565952	1E-11		0.015516328	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	815085	815086	rs351988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	LPPR3	rs351988-G	0.565916	6E-17		0.019132553	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	815085	815086	rs351988	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19p13.3	LPPR3	rs351988-A		9E-27		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
591	chr19	816539	816540	rs72982156	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs72982156-?	NR	6E-30		0.0244735	[0.02-0.029] unit increase	Affymetrix [20259828] (imputed)	N
591	chr19	816586	816586	rs146055611	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	19p13.3	LPPR3	rs146055611-C	0.66	7E-11		0.00639	[0.0045-0.0083] unit increase	Affymetrix [at least 8002429] (imputed)	N
591	chr19	817393	817394	rs7259714	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	19p13.3	PLPPR3	rs7259714-T	0.435	3E-9		0.0047	[0.0031-0.0063] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
591	chr19	817393	817394	rs7259714	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	PLPPR3	rs7259714-C	0.614435	8E-33		0.0229178	[0.019-0.027] unit increase	NR [13737936] (imputed)	N
591	chr19	817979	817980	rs8108787	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs8108787-?	NR	2E-21		0.0223668	[0.018-0.027] unit increase	Affymetrix [20259828] (imputed)	N
591	chr19	817979	817980	rs8108787	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	PLPPR3	rs8108787-T	0.739762	4E-10	(men)	0.0375435	[0.026-0.049] unit increase	NR [17166351] (imputed)	N
591	chr19	817979	817980	rs8108787	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	PLPPR3	rs8108787-T	0.737848	5E-16		0.0324198	[0.025-0.04] unit increase	NR [17166351] (imputed)	N
591	chr19	817979	817980	rs8108787	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	PLPPR3	rs8108787-T	0.736176	1E-7	(women)	0.0302883	[0.02-0.041] unit increase	NR [17166351] (imputed)	N
591	chr19	821101	821102	rs351101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	LPPR3	rs351101-C	0.226864	6E-10		0.016642394	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	830819	830820	rs28626600	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AZU1	5,364 Icelandic ancestry individuals	NA	19p13.3		rs28626600-A	0.1355	5E-36		0.340671	[0.29-0.39] unit decrease	Illumina [7506463] (imputed)	N
591	chr19	836042	836043	rs10425544	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	PRTN3	rs10425544-C	0.713	8E-110	(Myeloblastin, PRTN3.3514.49.2)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
591	chr19	836042	836043	rs10425544	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	PRTN3	rs10425544-C	0.713	1E-96	(Myeloblastin, PRTN3.13720.95.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
591	chr19	836143	836144	rs56757486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19p13.3	PRTN3	rs56757486-A	0.2526	6E-13		0.03000519	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	836148	836149	rs57228624	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19p13.3	PRTN3	rs57228624-C	0.2567	7E-14		0.03066913	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	836148	836149	rs57228624	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19p13.3	PRTN3	rs57228624-C	0.2566	1E-11		0.02792541	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	836186	836187	rs376329707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	19p13.3		rs376329707-C	NR	5E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
591	chr19	836186	836187	rs376329707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	PRTN3	rs376329707-C	0.254404	2E-26		0.028395467	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	836186	836187	rs376329707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	PRTN3	rs376329707-C	0.254371	1E-25		0.027849995	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	836653	836654	rs62132278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.3	PRTN3	rs62132278-T	0.255916	2E-37		0.033785343	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	836653	836654	rs62132278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.3	PRTN3	rs62132278-T	0.255914	2E-32		0.03140555	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	837173	837174	rs138303849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	19p13.3		rs138303849-C	0.2725	3E-20		0.195295	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
591	chr19	837173	837174	rs138303849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	19p13.3		rs138303849-C	0.2725	3E-28		0.225155	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
591	chr19	837173	837174	rs138303849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.3	PRTN3	rs138303849-C	0.2535	6E-9		0.02442823	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	837189	837190	rs76427287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs76427287-C	0.24824	1E-28				Affymetrix, Illumina [19905671] (imputed)	N
591	chr19	837189	837190	rs76427287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.3	NR	rs76427287-C	0.254032	2E-31		0.028841	[0.024-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
591	chr19	837679	837680	rs7254911	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs7254911-G	0.269	4E-17	(Myeloblastin, PRTN3.3514.49.2)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
591	chr19	838177	838178	rs62132293	28029757	Merkel PA	2016-12-28	Arthritis Rheumatol	Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.	Antineutrophil cytoplasmic antibody-associated vasculitis	1,015 European ancestry granulomatosis with polyangiitis cases, 206 European ancestry microscopic polyangiitis cases, 3,258 European ancestry controls.	541 European ancestry granulomatosis with polyangiitis cases, 30 European ancestry microscopic polyangiitis cases, 1,465 European ancestry controls.	19p13.3	PRTN3	rs62132293-G	0.31	9E-11		1.29	1.19-1.39	Affymetrix [at least 333035] (imputed)	N
591	chr19	840598	840599	rs11666373	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	PRTN3	rs11666373-G	0.63171875	3E-26	(PRTN3, 3514_49_2)	0.27302125	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
591	chr19	840983	840984	rs2074639	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19p13.3	NR	rs2074639-?	NR	6E-11	(Proteinase-3)	0.22	[0.16-0.28] unit increase	Illumina [4020654] (imputed)	N
591	chr19	843871	843872	rs146542642	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.3	PRTN3	rs146542642-A	0.0115103423233514	7E-6	(G_unclassified_P_Firmicutes_HB)	1.57347	[0.89-2.26] unit decrease	Illumina [7711310] (imputed)	N
591	chr19	843871	843872	rs146542642	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.3	PRTN3	rs146542642-A	0.0115103423233514	6E-7	(C_Deltaproteobacteria_HB)	1.70709	[1.04-2.38] unit decrease	Illumina [7711310] (imputed)	N
591	chr19	844019	844020	rs351111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,367 Icelandic ancestry individuals	NA	19p13.3		rs351111-A	0.3741	1E-46		0.278214	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
591	chr19	844019	844020	rs351111	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRTN3	5,361 Icelandic ancestry individuals	NA	19p13.3		rs351111-A	0.3741	4E-12		0.132155	[0.095-0.169] unit increase	Illumina [7506463] (imputed)	N
591	chr19	844019	844020	rs351111	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs351111-A	0.42	4E-66	(Myeloblastin, PRTN3.3514.49.2)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
591	chr19	845534	845535	rs6510982	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs6510982-G	0.766	8E-96	(Myeloblastin, PRTN3.13720.95.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
591	chr19	846040	846041	rs629631	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	19p13.3	NR	rs629631-T	0.1295	2E-15		0.1346	[0.1-0.17] unit increase	Illumina [~ 10600000] (imputed)	N
591	chr19	850732	850733	rs10409474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs10409474-?	NR	2E-8				NR [~ 8900000] (imputed)	N
591	chr19	850792	850793	rs3761005	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFD	5,341 Icelandic ancestry individuals	NA	19p13.3		rs3761005-A	0.3493	1E-14		0.132228	[0.099-0.166] unit increase	Illumina [7506463] (imputed)	N
591	chr19	851975	851976	rs2007647	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ELANE	5,349 Icelandic ancestry individuals	NA	19p13.3		rs2007647-A	0.2737	9E-26		0.210596	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
591	chr19	866519	866520	rs34772376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	CFD, MED16	rs34772376-C	0.27877	8E-25		0.026535256	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	866519	866520	rs34772376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	CFD, MED16	rs34772376-C	0.278731	6E-28		0.028731491	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	872254	872255	rs891206	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	ELANE	rs891206-G	0.61015625	2E-6	(ELANE, 13671_40_3)	0.12421991	[0.073-0.175] unit increase	Illumina [> 1000000] (imputed)	N
591	chr19	876640	876641	rs1651886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	MED16	rs1651886-C	0.377239	4E-24		0.02347778	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	876881	876882	rs111469573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	MED16	rs111469573-A	0.17577	6E-35		0.038353145	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	876881	876882	rs111469573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	MED16	rs111469573-A	0.175731	1E-44		0.043289237	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	877436	877437	rs1617214	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	PRTN3	rs1617214-G	0.7584375	5E-8	(PRTN3, 13720_95_3)	0.15956575	[0.1-0.22] unit increase	Illumina [> 1000000] (imputed)	N
591	chr19	897214	897215	rs2930883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs2930883-T	0.390556	1E-46		0.03517339	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	897214	897215	rs2930883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs2930883-T	0.390548	5E-39		0.03149242	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	897214	897215	rs2930883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	R3HDM4	rs2930883-T	0.390564	1E-24		0.024395399	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	897214	897215	rs2930883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs2930883-T	0.390553	1E-44		0.03362628	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	897214	897215	rs2930883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs2930883-T	0.390553	2E-62		0.040691987	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	897854	897855	rs111607343	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	19p13.3	NR	rs111607343-G	NR	3E-6		0.521	[0.3-0.74] SD units increase	NR [10700000] (imputed)	N
591	chr19	898287	898288	rs12985393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.3	R3HDM4	rs12985393-T	0.2964	1E-10		0.02618045	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	898287	898288	rs12985393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.3	R3HDM4	rs12985393-T	0.2964	8E-10		0.02495241	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	898287	898288	rs12985393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.3	R3HDM4	rs12985393-T	0.2965	1E-10		0.02613904	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	898287	898288	rs12985393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.3	R3HDM4	rs12985393-T	0.2965	3E-10		0.02550716	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	900950	900951	rs78580402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs78580402-G	0.01293	2E-23		0.099741586	[0.08-0.119] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	900950	900951	rs78580402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs78580402-G	0.012929	2E-21		0.09474022	[0.075-0.114] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	900950	900951	rs78580402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs78580402-G	0.012923	2E-29		0.11173575	[0.092-0.131] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	901506	901507	rs77971861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	R3HDM4	rs77971861-G	0.013055	2E-13		0.073615484	[0.054-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	901506	901507	rs77971861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs77971861-G	0.0130479999999999	6E-25		0.102163434	[0.083-0.122] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	903722	903723	rs2965298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs2965298-A	0.744	4E-11		0.018163664	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.01607	6E-49		0.13820635	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.01607	2E-45		0.13332462	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.016069	5E-46		0.13430895	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.016082	1E-54		0.14911509	[0.13-0.17] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.016082	2E-62		0.15565497	[0.14-0.17] unit increase	Affymetrix [93095623] (imputed)	N
591	chr19	906509	906510	rs111932385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.0167	1E-18		0.1330732	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	906509	906510	rs111932385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.0166	1E-15		0.1211533	[0.091-0.151] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	906509	906510	rs111932385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.0167	1E-18		0.1314682	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	906509	906510	rs111932385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.0167	4E-24		0.1531547	[0.12-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	906509	906510	rs111932385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.3	R3HDM4	rs111932385-A	0.0166	3E-22		0.1465017	[0.12-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
591	chr19	909299	909300	rs149249559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs149249559-G	0.00293299999999996	1E-9		0.13481943	[0.091-0.178] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.519663	8E-68		0.042530984	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.519663	3E-61		0.04013428	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.519668	3E-73		0.04501284	[0.04-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.519621	1E-107		0.05390089	[0.049-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.519612	2E-99		0.051489618	[0.047-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
591	chr19	913047	913048	rs1683587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.5151	9E-31		0.04448547	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	913047	913048	rs1683587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.5151	4E-31		0.04477088	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	913047	913048	rs1683587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.5151	2E-37		0.04872839	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	913047	913048	rs1683587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.5151	5E-42		0.05235026	[0.045-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
591	chr19	913047	913048	rs1683587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.3	R3HDM4	rs1683587-C	0.5151	7E-43		0.05288179	[0.045-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	920641	920642	rs350132	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	19p13.3	KISS1R	rs350132-A	0.728	8E-6		0.066	[0.037-0.095] unit increase	Illumina [5299861] (imputed)	N
592	chr19	926449	926450	rs530418693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	ARID3A	rs530418693-G	0.013893	2E-11		0.07148701	[0.051-0.092] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	930798	930799	rs62132342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	ARID3A	rs62132342-G	0.128128	6E-14		0.026887365	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr19	930798	930799	rs62132342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.3	ARID3A	rs62132342-G	0.1322	1E-15		0.0437718	[0.033-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	937135	937136	rs10414086	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19p13.3	NR	rs10414086-T	0.374	3E-14		0.885	[0.85-0.92]	Illumina [11270530] (imputed)	N
592	chr19	941602	941603	rs10415976	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	19p13.3	ARID3A	rs10415976-?	0.51	4E-12		1.2987013		Illumina [776516]	N
592	chr19	945012	945013	rs2238573	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	19p13.3	ARID3A	rs2238573-?	NR	6E-6		1.1494253	[1.08-1.22]	Illumina [at least 5000000] (imputed)	N
592	chr19	948461	948462	rs147497443	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	19p13.3		rs147497443-?	NR	3E-6		0.27590638	[0.16-0.39] unit increase	Illumina [9939936] (imputed)	N
592	chr19	950379	950380	rs2159128	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	19p13.3	ARID3A	rs2159128-G	0.13	3E-7		0.02	[0.01-0.03] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
592	chr19	950693	950694	rs349306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19p13.3		rs349306-?	NR	4E-17				NR [~ 8900000] (imputed)	N
592	chr19	950693	950694	rs349306	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	19p13.3	POLR2E, KISS1R	rs349306-G	0.13	2E-10		0.23	[0.15-0.31] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
592	chr19	957699	957700	rs116904359	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs116904359-?	NR	2E-10		0.034374	[0.024-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr19	982967	982968	rs10422046	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of medical pain (dental)	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	19p13.3	NR	rs10422046-A	0.11	1E-6		1.38	unit increase	Illumina [8591557] (imputed)	N
592	chr19	984617	984618	rs75214262	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs75214262-A	0.05401	1E-8	(IGHG1)	2.257	NR unit increase	Illumina [1671387] (imputed)	N
592	chr19	989729	989730	rs2240147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.3		rs2240147-?	NR	1E-9				NR [~ 8900000] (imputed)	N
592	chr19	994530	994531	rs118012496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs118012496-?	NR	2E-11				NR [~ 8900000] (imputed)	N
592	chr19	1000419	1000420	rs112743753	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.3	NR	rs112743753-G	0.32528	5E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix [23037915] (imputed)	N
592	chr19	1000798	1000799	rs2301813	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	19p13.3	GRIN3B	rs2301813-?	NR	3E-8		0.03943	[0.026-0.053] unit increase novel	Illumina [6108953] (imputed)	N
592	chr19	1009364	1009365	rs10417824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs10417824-A	0.45187	5E-38				Affymetrix, Illumina [22063850] (imputed)	N
592	chr19	1012001	1012002	rs117246624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs117246624-?	NR	5E-14				NR [~ 8900000] (imputed)	N
592	chr19	1014537	1014547	rs67806247	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.3	GRIN3B	rs67806247-A	NR	2E-9		0.0238078	[0.016-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
592	chr19	1014537	1014547	rs67806247	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.3	TMEM259	rs67806247-A	0.4213	1E-12		0.02548935	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1023866	1023867	rs8102732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.3	CNN2, TMEM259	rs8102732-C	0.4658	5E-9		0.02122699	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1026476	1026477	rs4807440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.3		rs4807440-T	NR	3E-16		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
592	chr19	1026476	1026477	rs4807440	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19p13.3		rs4807440-G	0.362	1E-10				Affymetrix [10369434] (imputed)	N
592	chr19	1026476	1026477	rs4807440	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19p13.3		rs4807440-G	0.362	7E-14				Affymetrix [10369434] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	CNN2	rs4807440-T	0.638389	2E-29		0.0262263	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	CNN2	rs4807440-G	0.361669	8E-28		0.02544234	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	CNN2	rs4807440-T	0.637936	5E-10		0.015555377	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	CNN2	rs4807440-T	0.638345	2E-9		0.014238496	[0.0096-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs4807440-T	0.602487	3E-35				Affymetrix, Illumina [24649327] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.3	NR	rs4807440-T	0.636654	6E-35		0.025256	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.3	NR	rs4807440-T	0.637561	4E-26		0.022406	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs4807440-T	0.615007	7E-34				Affymetrix, Illumina [23467995] (imputed)	N
592	chr19	1026476	1026477	rs4807440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.3	NR	rs4807440-T	0.637515	4E-34		0.02509	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
592	chr19	1026476	1026477	rs4807440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs4807440-?	NR	6E-25				NR [~ 8900000] (imputed)	N
592	chr19	1026476	1026477	rs4807440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19p13.3	CNN2	rs4807440-T	0.638	3E-10		0.02374496	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1026476	1026477	rs4807440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.3	CNN2	rs4807440-T	0.6381	3E-11		0.02493669	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1030319	1030320	rs67476743	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Tyzzerella3 id.11335)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19p13.3		rs67476743-T	NR	4E-9		5.895279	z score increase	Affymetrix, Illumina [NR] (imputed)	N
592	chr19	1030430	1030431	rs7246841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	CNN2	rs7246841-C	0.733134	5E-22		0.024398465	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr19	1030649	1030650	rs7252428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	CNN2	rs7252428-G	0.737214	1E-24		0.026848238	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr19	1031437	1031438	rs67538026	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19p13.3	CNN2, GPX4	rs67538026-?	NR	3E-8	(EA)	1.1111112		Illumina [12023830] (imputed)	N
592	chr19	1033558	1033559	rs4807455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	CNN2	rs4807455-A	0.25821	7E-12		0.017881295	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr19	1033558	1033559	rs4807455	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.3	CNN2	rs4807455-A	0.2578	1E-11		0.02862183	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1036017	1036018	rs930232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.3		rs930232-A	NR	1E-21		0.0208	[0.016-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
592	chr19	1036017	1036018	rs930232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	CNN2	rs930232-A	0.460413	5E-11		0.014804502	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1036017	1036018	rs930232	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	CNN2	rs930232-A	0.4604	5E-24		0.022706334	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
592	chr19	1036017	1036018	rs930232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs930232-A	0.451223	1E-26				Affymetrix, Illumina [23114412] (imputed)	N
592	chr19	1036017	1036018	rs930232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19p13.3	CNN2	rs930232-A	0.461	3E-10		0.02305395	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1036443	1036444	rs930231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	CNN2	rs930231-A	0.317438	2E-9		0.014354805	[0.0096-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr19	1039322	1039323	rs111278892	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19p13.3	ABCA7	rs111278892-G	0.161	8E-11		6.5	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
592	chr19	1039443	1039444	rs3795065	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19p13.3	NR	rs3795065-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
592	chr19	1043637	1043638	rs3752231	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19p13.3	NR	rs3752231-?	NR	6E-11				Affymetrix [7795605] (imputed)	N
592	chr19	1045567	1045568	rs74253465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.3	ABCA7	rs74253465-A	0.1452	9E-12		0.03515486	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1045567	1045568	rs74253465	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.3	ABCA7	rs74253465-A	0.1452	6E-11		0.03360922	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
592	chr19	1046519	1046520	rs3764650	21460840	Hollingworth P	2011-04-03	Nat Genet	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	19p13.3	ABCA7	rs3764650-?	0.10	5E-17		1.23	[1.18-1.30]	Affymetrix, Illumina [496763]	N
593	chr19	1049304	1049305	rs4147915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19p13.3	ABCA7	rs4147915-A	0.1475	4E-11		0.03412366	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1049304	1049305	rs4147915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19p13.3	ABCA7	rs4147915-A	0.1475	2E-12		0.03621176	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1049304	1049305	rs4147915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19p13.3	ABCA7	rs4147915-A	0.1475	1E-12		0.0368177	[0.027-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1049304	1049305	rs4147915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19p13.3	ABCA7	rs4147915-A	0.1476	2E-11		0.03470054	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1049395	1049396	rs201347186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.3		rs201347186-A	NR	4E-27		0.2438	[0.2-0.29] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
593	chr19	1049395	1049396	rs201347186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	19p13.3		rs201347186-A	0.005733	4E-27		0.24382	[0.2-0.29] unit decrease	Illumina [13479091] (imputed)	N
593	chr19	1050419	1050420	rs115550680	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	19p13.3	ABCA7	rs115550680-?		4E-7	(model 2)	1.58	[1.32-1.88]	Illumina [29610185] (imputed)	N
593	chr19	1050419	1050420	rs115550680	23571587	Reitz C	2013-04-10	JAMA	Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ?4,and the risk of late-onset Alzheimer disease in African Americans.	Alzheimer's disease (late onset)	1,968 African American cases, 3,928 African American controls		19p13.3	ABCA7, HMHA1, GRIN3B	rs115550680-G	0.07	2E-9		1.79	[1.47-2.12]	Illumina [17332474] (imputed)	N
593	chr19	1050873	1050874	rs12151021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.3		rs12151021-G	NR	5E-22		0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
593	chr19	1050873	1050874	rs12151021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	19p13.3		rs12151021-G	0.450674	4E-18		0.031761	[0.025-0.039] unit increase	Illumina [13477028] (imputed)	N
593	chr19	1050873	1050874	rs12151021	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	19p13.3		rs12151021-?	NR	3E-15				Illumina [NR] (imputed)	N
593	chr19	1050873	1050874	rs12151021	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19p13.3	ABCA7	rs12151021-?	NR	2E-13		0.0772974	unit increase	NR [10687077] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	ABCA7	rs12151021-G	0.67466	4E-37		0.030205164	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.3	ABCA7	rs12151021-A	0.674628	9E-18		0.0202847	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.3	NR	rs12151021-A	0.325074	9E-42		0.028772	[0.025-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs12151021-G	0.62999	5E-35				Affymetrix, Illumina [21126107] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.3	NR	rs12151021-G	0.675192	4E-22		0.020895	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
593	chr19	1050873	1050874	rs12151021	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	19p13.3	NR	rs12151021-A	0.547794	5E-18		0.035398	[0.027-0.043] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
593	chr19	1050873	1050874	rs12151021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs12151021-?	NR	1E-41				NR [~ 8900000] (imputed)	N
593	chr19	1050873	1050874	rs12151021	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	19p13.3	ABCA7	rs12151021-?	NR	2E-11		0.03013	[0.021-0.039] unit increase novel	Illumina [6108953] (imputed)	N
593	chr19	1051514	1051515	rs117390715	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.3	ABCA7	rs117390715-C	0.98	8E-8	(Hex2Cer d18:1/24:1, conditioned on rs3752246)	0.352	[0.22-0.48] unit increase	Illumina [~ 47000000] (imputed)	N
593	chr19	1051946	1051947	rs143226982	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	19p13.3		rs143226982-T	0.0055	1E-8		3.1931126	[2.04-4.34] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
593	chr19	1053523	1053524	rs3752241	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	19p13.3	ABCA7	rs3752241-G	NR	3E-8		5.55	NR z-score decrease	Affymetrix [10847151] (imputed)	N
593	chr19	1053523	1053524	rs3752241	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19p13.3	ABCA7	rs3752241-G	0.1656	4E-10		6.273173	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
593	chr19	1056491	1056492	rs3752246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.3		rs3752246-C	NR	2E-16		0.0196	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
593	chr19	1056491	1056492	rs3752246	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.3	ABCA7	rs3752246-G	0.123917	8E-11	(lactosyl-N-palmitoyl-sphingosine (d18:1/16:0))	0.226	[0.16-0.29] unit decrease	Illumina [13039987] (imputed)	N
593	chr19	1056491	1056492	rs3752246	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.3	ABCA7	rs3752246-G	0.123917	6E-38	(lactosyl-N-nervonoyl-sphingosine (d18:1/24:1)*)	0.45	[0.38-0.52] unit decrease	Illumina [13039987] (imputed)	N
593	chr19	1056491	1056492	rs3752246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	ABCA7	rs3752246-C	0.823342	4E-10		0.018011697	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1056491	1056492	rs3752246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	ABCA7	rs3752246-C	0.823349	1E-60		0.047867794	[0.042-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1056491	1056492	rs3752246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	ABCA7	rs3752246-C	0.823306	8E-14		0.022063458	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1056491	1056492	rs3752246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	ABCA7	rs3752246-C	0.823334	2E-15		0.0219766	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1056491	1056492	rs3752246	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.3	ABCA7	rs3752246-C	0.6312	3E-30	(Hex2Cer d18:1/24:1)	0.1964	[0.16-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
593	chr19	1056491	1056492	rs3752246	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.3	ABCA7	rs3752246-C	0.6312	1E-9	(Hex2Cer d18:1/16:0)	0.0812	[0.055-0.107] unit increase	Illumina [~ 47000000] (imputed)	N
593	chr19	1056491	1056492	rs3752246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs3752246-?	NR	1E-11				NR [~ 8900000] (imputed)	N
593	chr19	1056491	1056492	rs3752246	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	19p13.3	ABCA7	rs3752246-G	0.19	6E-7		1.15	[1.09-1.21]	Affymetrix, Illumina [2324889] (imputed)	N
593	chr19	1058175	1058176	rs4147918	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19p13.3	ABCA7	rs4147918-?	NR	8E-7		0.120111	unit decrease	NR [10687077] (imputed)	N
593	chr19	1059423	1059424	rs186543342	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	19p13.3	NR	rs186543342-C		9E-6		0.1896	[0.11-0.27] SD units increase	NR [10700000] (imputed)	N
593	chr19	1060486	1060487	rs10411696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19p13.3	ABCA7	rs10411696-G	0.4713	4E-9		0.02106893	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1063442	1063443	rs4147929	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19p13.3		rs4147929-A	0.1959	3E-8		40.68226	z score increase	NR [6814003]	N
593	chr19	1063442	1063443	rs4147929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	19p13.3		rs4147929-G	0.62919	2E-8		0.017826	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
593	chr19	1063442	1063443	rs4147929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	19p13.3	NR	rs4147929-A	0.366224	2E-10		0.024451	[0.017-0.032] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
593	chr19	1063442	1063443	rs4147929	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	19p13.3	ABCA7	rs4147929-?	NR	3E-9		1.12	[1.08-1.17]	Affymetrix [up to 7055881] (imputed)	N
593	chr19	1063442	1063443	rs4147929	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19p13.3	ABCA7	rs4147929-A	NR	6E-7		5.01	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
593	chr19	1063442	1063443	rs4147929	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	19p13.3	ABCA7	rs4147929-A	NR	9E-9		5.76	NR z-score increase	Illumina [up to 9862738] (imputed)	N
593	chr19	1063442	1063443	rs4147929	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19p13.3	NR	rs4147929-?	NR	3E-8		1.0491707	[1.03-1.07]	Affymetrix [7795605] (imputed)	N
593	chr19	1063442	1063443	rs4147929	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	19p13.3	ABCA7	rs4147929-A	0.19	1E-15		1.15	[1.11-1.19]	Illumina [7055881] (imputed)	N
593	chr19	1066737	1066738	rs4147940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	HMHA1	rs4147940-T	0.34271	2E-10		0.015470067	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1066737	1066738	rs4147940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	HMHA1	rs4147940-T	0.342703	2E-11		0.016244767	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1066737	1066738	rs4147940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	HMHA1	rs4147940-T	0.342689	3E-11		0.01604194	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1067245	1067245	rs137926414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19p13.3		rs137926414-TG	0.593758	2E-9		0.0200679	[0.014-0.027] unit increase	Illumina [13479135] (imputed)	N
593	chr19	1067821	1067822	rs1610096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.3	HMHA1	rs1610096-G	0.4916	5E-10		0.02243124	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1073999	1074000	rs2074442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	HMHA1	rs2074442-T	0.746343	3E-12		0.01776014	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1074314	1074315	rs12974537	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.3	HMHA1	rs12974537-T	0.093	1E-12		0.0445208	[0.032-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1076482	1076491	rs1467407308	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs1467407308-T	0.01045	1E-8	(ANP32A)	0.09416	NR unit increase	Illumina [1671387] (imputed)	N
593	chr19	1077984	1077985	rs7251797	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARHGAP45	5,364 Icelandic ancestry individuals	NA	19p13.3		rs7251797-G	0.3488	1E-14		0.149388	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
593	chr19	1078296	1078297	rs35140707	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.3		rs35140707-C	0.9	9E-14				Affymetrix [10369434] (imputed)	N
593	chr19	1078296	1078297	rs35140707	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.3		rs35140707-C	0.9	2E-19				Affymetrix [10369434] (imputed)	N
593	chr19	1078296	1078297	rs35140707	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.3		rs35140707-C	0.9	2E-26				Affymetrix [10369434] (imputed)	N
593	chr19	1078296	1078297	rs35140707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	HMHA1	rs35140707-T	0.09987	2E-26		0.039363448	[0.032-0.047] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1078296	1078297	rs35140707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	HMHA1	rs35140707-T	0.099714	2E-22		0.03824625	[0.031-0.046] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1078296	1078297	rs35140707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	HMHA1	rs35140707-T	0.099853	2E-28		0.040903	[0.034-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1078296	1078297	rs35140707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	HMHA1	rs35140707-T	0.099903	9E-41		0.050739262	[0.043-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1078302	1078303	rs35532684	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.3	HMHA1	rs35532684-C	0.0998	2E-11		0.03974609	[0.028-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1078993	1078994	rs76957023	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	HMHA1	rs76957023-A	0.723125	1E-6	(HMHA1, 13544_9_3)	0.13163033	[0.079-0.184] unit decrease	Illumina [> 1000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.3		rs36084354-A	NR	2E-46		0.0583	[0.05-0.066] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
593	chr19	1079958	1079959	rs36084354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.3		rs36084354-A	NR	1E-19		0.0274	[0.022-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
593	chr19	1079958	1079959	rs36084354	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19p13.3		rs36084354-G	0.908	5E-13				Affymetrix [10369434] (imputed)	N
593	chr19	1079958	1079959	rs36084354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	NR	4E-14		0.0331	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	NR	4E-31		0.0508	[0.042-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	NR	4E-10		0.0267	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	NR	3E-13		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	NR	4E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	HMHA1	rs36084354-A	0.091853	2E-28		0.04396466	[0.036-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	HMHA1	rs36084354-A	0.091876	8E-34		0.046551075	[0.039-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	0.0752964	3E-67				Affymetrix, Illumina [23472807] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs36084354-A	0.091708	7E-71		0.060717	[0.054-0.067] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs36084354-A	0.0756652	4E-36				Affymetrix, Illumina [19872809] (imputed)	N
593	chr19	1079958	1079959	rs36084354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.3	NR	rs36084354-A	0.091843	1E-39		0.045367	[0.039-0.052] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
593	chr19	1079958	1079959	rs36084354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs36084354-?	NR	1E-35				NR [~ 8900000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	19p13.3	HMHA1	rs36084354-A	0.1411	2E-7		0.1	NR SD units decrease	Illumina [21568490] (imputed)	N
593	chr19	1079958	1079959	rs36084354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19p13.3	HMHA1	rs36084354-A	0.092	7E-11		0.04018214	[0.028-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.3	HMHA1	rs36084354-A	0.092	2E-12		0.04331237	[0.031-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.3	HMHA1	rs36084354-A	0.0921	3E-21		0.05892721	[0.047-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.3	HMHA1	rs36084354-A	0.092	1E-11		0.04183581	[0.03-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1079958	1079959	rs36084354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19p13.3	HMHA1	rs36084354-A	0.092	4E-12		0.04275776	[0.031-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1080188	1080189	rs2074453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	HMHA1	rs2074453-C	0.328771	3E-12		0.01771031	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1080188	1080189	rs2074453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs2074453-G	0.664578	1E-31				Affymetrix, Illumina [17210439] (imputed)	N
593	chr19	1080188	1080189	rs2074453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.3	NR	rs2074453-G	0.671297	2E-34		0.025272	[0.021-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
593	chr19	1082265	1082266	rs11878920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.3		rs11878920-C	NR	4E-9		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
593	chr19	1084025	1084026	rs62131205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19p13.3		rs62131205-C	NR	3E-17		0.0396	[0.03-0.049] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
593	chr19	1084025	1084026	rs62131205	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	19p13.3	HMHA1, POLR2E	rs62131205-?		6E-7	(corrected for APOE4 status)	0.14	[NR] unit increase	Illumina [5137218] (imputed)	N
593	chr19	1084345	1084349	rs564447691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	19p13.3		rs564447691-G	0.006564	9E-12		0.207129	[0.15-0.27] unit decrease	Illumina [13467171] (imputed)	N
593	chr19	1084345	1084349	rs564447691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19p13.3		rs564447691-G	0.006337	3E-9		0.173049	[0.12-0.23] unit decrease	Illumina [13471440] (imputed)	N
593	chr19	1084345	1084349	rs564447691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	19p13.3		rs564447691-G	0.006319	5E-15		0.230492	[0.17-0.29] unit decrease	Illumina [13471431] (imputed)	N
593	chr19	1086042	1086043	rs3761026	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	19p13.3	NR	rs3761026-C	0.4668	1E-6		0.1488	[0.089-0.208] unit decrease	Illumina [10677593] (imputed)	N
593	chr19	1088164	1088165	rs564932183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	19p13.3	NR	rs564932183-T	0.9943	3E-24		0.2648	[0.21-0.32] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
593	chr19	1088164	1088165	rs564932183	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	19p13.3	NR	rs564932183-T	0.9943	1E-13		0.2449	[0.18-0.31] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
593	chr19	1090802	1090803	rs3787016	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs3787016-G	NR	1E-17		0.0245	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
593	chr19	1090802	1090803	rs3787016	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	19p13.3	HMHA1, POLR2E	rs3787016-?		7E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
593	chr19	1095335	1095336	rs1046041	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	19p13.3	NR	rs1046041-T	0.518174	6E-6		1.1235955	[1.06-1.18]	Illumina [8992756] (imputed)	N
593	chr19	1095513	1095514	rs1046040	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	19p13.3		rs1046040-?	NR	8E-6		1.0466706	[1.02592037732084-1.06784051605223]	Illumina [7827597] (imputed)	N
593	chr19	1098882	1098883	rs10411247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs10411247-A	NR	5E-12		0.0271	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1098882	1098883	rs10411247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs10411247-A	NR	6E-22		0.0378	[0.03-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
593	chr19	1103229	1103230	rs8178962	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	19p13.3	GPX4	rs8178962-?	NR	4E-14		1.1	NR unit decrease	NR [14100000] (imputed)	N
593	chr19	1104077	1104078	rs4807542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	19p13.3		rs4807542-A	NR	1E-8		0.1478	[0.097-0.199] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
593	chr19	1104077	1104078	rs4807542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	GPX4	rs4807542-A	0.16662	3E-25		0.031508792	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1104077	1104078	rs4807542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	GPX4	rs4807542-A	0.166606	2E-21		0.028435826	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1104077	1104078	rs4807542	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	19p13.3	GPX4	rs4807542-G	0.835	8E-8		1.1904762	[1.11-1.27]	Affymetrix, Illumina [up to 37123566] (imputed)	N
593	chr19	1104077	1104078	rs4807542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19p13.3	GPX4	rs4807542-A	0.1694	2E-9		0.02894799	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1104077	1104078	rs4807542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.3	GPX4	rs4807542-A	0.1693	5E-9		0.02821863	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1104077	1104078	rs4807542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19p13.3	GPX4	rs4807542-A	0.1694	5E-15		0.03752435	[0.028-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1104077	1104078	rs4807542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.3	GPX4	rs4807542-A	0.1693	3E-11		0.0321279	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1104077	1104078	rs4807542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19p13.3	GPX4	rs4807542-A	0.1694	1E-11		0.0327061	[0.023-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1105839	1105845	rs146333943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	GPX4	rs146333943-T	0.195293	6E-11		0.01845871	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1106476	1106477	rs8178977	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	19p13.3	GPX4	rs8178977-C	0.247321	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
593	chr19	1106476	1106477	rs8178977	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		19p13.3	NR	rs8178977-G	NR	2E-6		1.1092918	[1.06-1.16]	Affymetrix [5734850] (imputed)	N
593	chr19	1106844	1106845	rs2075710	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p13.3	GPX4	rs2075710-C	0.770178	4E-12		0.00196417	[0.0014-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
593	chr19	1106844	1106845	rs2075710	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	19p13.3	GPX4	rs2075710-T	0.228752	2E-8		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
593	chr19	1109214	1109215	rs11669443	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	19p13.3	SBNO2	rs11669443-A	0.23506	2E-9		0.07574728	[0.051-0.1] unit increase	Affymetrix [7260263] (imputed)	N
593	chr19	1109214	1109215	rs11669443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	SBNO2	rs11669443-A	0.235252	3E-32		0.03274078	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1112942	1112943	rs7249065	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	19p13.3	SBNO2	rs7249065-?	NR	9E-6		1.3	[1.16-1.45]	Illumina [at least 5000000] (imputed)	N
593	chr19	1123175	1123176	rs55688536	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	19p13.3	SBNO2	rs55688536-?	NR	1E-8		0.03693	[0.024-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
593	chr19	1124030	1124031	rs2024092	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	19p13.3	GPX4, SBNO2, STK11	rs2024092-?		5E-17				Illumina [9725440] (imputed)	N
593	chr19	1124030	1124031	rs2024092	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	19p13.3	GPX4, SBNO2, STK11	rs2024092-?		1E-20				Illumina [9560910] (imputed)	N
593	chr19	1124030	1124031	rs2024092	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.3	SBNO2	rs2024092-?	NR	2E-18	(subset analysis)			Illumina [130052]	N
593	chr19	1124030	1124031	rs2024092	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.3	NR	rs2024092-A	0.2162	1E-18	(EA)	1.1127257	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
593	chr19	1124030	1124031	rs2024092	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.3	NR	rs2024092-A	0.2162	7E-25	(EA)	1.159123	[1.13-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
593	chr19	1124030	1124031	rs2024092	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	19p13.3	GPX4, HMHA1	rs2024092-A	0.215	8E-22		1.156	[1.112-1.201]	Affymetrix, Illumina [1230000] (imputed)	N
593	chr19	1124833	1124834	rs1076266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.3		rs1076266-G	NR	1E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
593	chr19	1124834	1124835	rs740495	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	19p13.3		rs740495-?	NR	1E-7		1.06681	[1.04-1.09]	NR [685523]	N
593	chr19	1124834	1124835	rs740495	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	19p13.3	GPX4, SBNO2	rs740495-G	0.247	8E-12		1.16	[1.10-1.21]	Affymetrix, Illumina [953241] (imputed)	N
593	chr19	1127980	1127981	rs2074919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs2074919-?	NR	4E-11				NR [~ 8900000] (imputed)	N
593	chr19	1132636	1132637	rs879983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs879983-?	NR	1E-9				NR [~ 8900000] (imputed)	N
593	chr19	1152655	1152656	rs892225	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs892225-G	0.38142299999999996	2E-13		0.00598939	[0.0043-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
593	chr19	1152655	1152656	rs892225	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.3	NR	rs892225-G	0.38026899999999997	2E-12		0.00846582	[0.0059-0.011] unit increase	Affymetrix [16585854] (imputed)	N
593	chr19	1152655	1152656	rs892225	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs892225-G	0.38142299999999996	1E-8		0.00541345	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
593	chr19	1152655	1152656	rs892225	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.3	NR	rs892225-G	0.38026899999999997	4E-7		0.00745949	[0.0046-0.0104] unit increase	Affymetrix [16585866] (imputed)	N
593	chr19	1152655	1152656	rs892225	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	19p13.3	NR	rs892225-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
593	chr19	1152655	1152656	rs892225	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	19p13.3	SBNO2	rs892225-G	0.378	2E-7		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
593	chr19	1152655	1152656	rs892225	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	19p13.3	SBNO2	rs892225-?	NR	1E-12		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
593	chr19	1155723	1155724	rs528718064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	19p13.3	NR	rs528718064-C	0.995	9E-10		0.2491	[0.17-0.33] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
593	chr19	1156852	1156853	rs4807612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.3	NR	rs4807612-C	NR	1E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
593	chr19	1156852	1156853	rs4807612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	SBNO2	rs4807612-C	0.322277	3E-10		0.015370746	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1157641	1157642	rs62131228	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	19p13.3	STK11, SBNO2	rs62131228-G	0.981	2E-8		1.28	[1.17-1.40]	Affymetrix, Illumina [11947015] (imputed)	N
593	chr19	1159133	1159134	rs35254404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.3		rs35254404-G	NR	2E-9		0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
593	chr19	1159133	1159134	rs35254404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	SBNO2	rs35254404-G	0.239611	4E-27		0.029007489	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1159133	1159134	rs35254404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.3	SBNO2	rs35254404-G	0.239617	2E-33		0.031868324	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1159133	1159134	rs35254404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	SBNO2	rs35254404-G	0.239622	1E-36		0.03381192	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1160176	1160177	rs60634368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs60634368-?	NR	6E-13				NR [~ 8900000] (imputed)	N
593	chr19	1162375	1162376	rs11084888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	SBNO2	rs11084888-A	0.311188	5E-35		0.029790236	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1163595	1163596	rs12985107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs12985107-G	0.335282	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
593	chr19	1163595	1163596	rs12985107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs12985107-G	0.322958	1E-11		0.014051	[0.01-0.0181] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
593	chr19	1163933	1163934	rs10853952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19p13.3		rs10853952-T	NR	2E-10		0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
593	chr19	1163933	1163934	rs10853952	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19p13.3	novel2, LOC102723798	rs10853952-T	0.31	4E-9				NR [> 9500000] (imputed)	N
593	chr19	1164197	1164198	rs35971149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	SBNO2	rs35971149-C	0.310313	1E-37		0.031543776	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1164197	1164198	rs35971149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.3	SBNO2	rs35971149-C	0.3099	3E-17		0.03316492	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1164197	1164198	rs35971149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.3	SBNO2	rs35971149-C	0.31	6E-15		0.0305964	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1164197	1164198	rs35971149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.3	SBNO2	rs35971149-C	0.3099	1E-16		0.03214381	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1164197	1164198	rs35971149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.3	SBNO2	rs35971149-C	0.3099	3E-22		0.03794556	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1164197	1164198	rs35971149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.3	SBNO2	rs35971149-C	0.3099	5E-21		0.03683046	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
593	chr19	1166040	1166040	rs150434627	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs150434627-?	NR	3E-34		0.0427938	[0.035-0.05] unit increase	Affymetrix [20259828] (imputed)	N
593	chr19	1166409	1166410	rs12462901	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.3	NR	rs12462901-?	NR	3E-6		0.0421	[0.024-0.06] unit increase	Illumina [at least 560000] (imputed)	N
593	chr19	1167156	1167157	rs57813069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs57813069-?	NR	4E-66				NR [~ 8900000] (imputed)	N
593	chr19	1167527	1167528	rs115605487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	SBNO2	rs115605487-T	0.00647399999999998	1E-11		0.09557746	[0.068-0.123] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1169065	1169066	rs11668064	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	SBNO2	rs11668064-A	0.686824	2E-65		0.0343142	[0.03-0.038] unit increase	NR [13737936] (imputed)	N
593	chr19	1169065	1169066	rs11668064	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs11668064-?	NR	1E-58		0.0356519	[0.031-0.04] unit increase	Affymetrix [20259828] (imputed)	N
593	chr19	1170296	1170297	rs4807629	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs4807629-?	NR	2E-57		0.035301	[0.031-0.04] unit increase	Affymetrix [20259828] (imputed)	N
593	chr19	1170296	1170297	rs4807629	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	SBNO2	rs4807629-A	0.684845	2E-11	(women)	0.0337472	[0.024-0.044] unit increase	NR [17166351] (imputed)	N
593	chr19	1170296	1170297	rs4807629	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	SBNO2	rs4807629-A	0.684324	5E-18		0.0323465	[0.025-0.04] unit increase	NR [17166351] (imputed)	N
593	chr19	1170296	1170297	rs4807629	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	SBNO2	rs4807629-A	0.683727	2E-6	(men)	0.0260852	[0.015-0.037] unit increase	NR [17166351] (imputed)	N
593	chr19	1170444	1170445	rs4807630	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	19p13.3	SBNO2, GPX4, STK11	rs4807630-T	0.308	2E-8		1.093	[1.060-1.128]	Affymetrix [10894596] (imputed)	N
593	chr19	1170822	1170823	rs2082498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	SBNO2	rs2082498-C	0.713543	3E-14		0.019932676	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1171212	1171213	rs4807633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	SBNO2	rs4807633-T	0.281637	1E-9		0.015411511	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1172569	1172570	rs1433130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs1433130-?	NR	1E-13				NR [~ 8900000] (imputed)	N
593	chr19	1172638	1172639	rs76224134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	SBNO2	rs76224134-T	0.0123529999999999	2E-12		0.07283563	[0.053-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1172638	1172639	rs76224134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	SBNO2	rs76224134-T	0.012358	2E-14		0.07959991	[0.059-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
593	chr19	1173892	1173893	rs117830785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs117830785-?	NR	2E-8				NR [~ 8900000] (imputed)	N
593	chr19	1174317	1174317	rs201384443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	SBNO2	rs201384443-CG	0.026042	8E-13		0.052811604	[0.038-0.067] unit increase	Affymetrix [93095623] (imputed)	N
593	chr19	1175840	1175841	rs4807644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	19p13.3		rs4807644-A	NR	3E-8		0.0716	[0.046-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
594	chr19	1183008	1183009	rs7252278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19p13.3		rs7252278-G	0.381009	5E-9		0.0245851	[0.016-0.033] unit decrease	Illumina [13476266] (imputed)	N
594	chr19	1185923	1185924	rs11878692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs11878692-G	NR	5E-16		0.0273	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr19	1186315	1186316	rs72977586	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.3	STK11	rs72977586-?	NR	4E-9	(subset analysis)			Illumina [130052]	N
594	chr19	1186558	1186559	rs66578645	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs66578645-T	NR	7E-10		0.0183	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
594	chr19	1187674	1187675	rs72977594	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	19p13.3	SBNO2	rs72977594-A	0.149821	5E-9		0.07549143	[0.05-0.101] unit decrease	Affymetrix [7288503] (imputed)	N
594	chr19	1190729	1190729	rs553616728	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs553616728-?	NR	9E-12		0.0205025	[0.015-0.026] unit increase	Affymetrix [20259828] (imputed)	N
594	chr19	1191287	1191288	rs10416087	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs10416087-?	NR	8E-10		0.0142058	[0.0097-0.0187] unit decrease	Affymetrix [20259828] (imputed)	N
594	chr19	1192378	1192378	rs10660569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	STK11	rs10660569-TTG	0.762878	1E-14		0.021237565	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1192378	1192378	rs10660569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	STK11	rs10660569-TTG	0.76286	4E-21		0.025891943	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
594	chr19	1192378	1192378	rs10660569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	STK11	rs10660569-TTG	0.762884	8E-22		0.026672106	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
594	chr19	1205888	1205889	rs147615524	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	NR	rs147615524-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
594	chr19	1207237	1207238	rs3764640	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	19p13.3	STK11	rs3764640-?	0.79	8E-6		1.4705882	[NR]	Illumina [1882172] (imputed)	N
594	chr19	1217559	1217560	rs3795063	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	19p13.3	STK11	rs3795063-C	0.65	7E-11		0.49	[0.33-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
594	chr19	1217559	1217560	rs3795063	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	19p13.3	STK11	rs3795063-C	0.643	3E-11		0.5192	[0.37-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
594	chr19	1224285	1224286	rs35004890	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.3	NR	rs35004890-G	0.779	9E-10		0.0363	[0.025-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
594	chr19	1236395	1236396	rs150985681	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19p13.3	NR	rs150985681-A	0.0253002	2E-8		0.0549999	[0.036-0.074] unit increase	NR [19129689] (imputed)	N
594	chr19	1238257	1238257	rs35846135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.3	NR	rs35846135-CG	NR	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
594	chr19	1244899	1244900	rs1076230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	MIDN	rs1076230-G	0.468957	1E-15		0.017616149	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
594	chr19	1244899	1244900	rs1076230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	MIDN	rs1076230-G	0.468938	3E-10		0.013931643	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
594	chr19	1244899	1244900	rs1076230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	MIDN	rs1076230-G	0.468924	3E-10		0.013946357	[0.0096-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
594	chr19	1246078	1246079	rs150122016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs150122016-G	0.972043	8E-9		0.01617	[0.011-0.022] unit increase	Affymetrix [16582909] (imputed)	N
594	chr19	1246078	1246079	rs150122016	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs150122016-G	0.972043	1E-7		0.0166965	[0.011-0.023] unit increase	Affymetrix [16582965] (imputed)	N
594	chr19	1247289	1247290	rs10425079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	MIDN	rs10425079-C	0.347224	5E-14		0.019745974	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1252450	1252451	rs10423391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs10423391-C	NR	2E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
594	chr19	1253641	1253642	rs73494666	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.3		rs73494666-T	NR	4E-10		0.42	[0.28-0.56] unit decrease	Illumina [97506867]	N
594	chr19	1253641	1253642	rs73494666	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.3		rs73494666-T	NR	1E-9		0.16	[0.1-0.22] unit decrease	Illumina [94681438]	N
594	chr19	1253641	1253642	rs73494666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	MIDN	rs73494666-T	0.00700999999999996	2E-9		0.0930868	[0.068-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1253641	1253642	rs73494666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	MIDN	rs73494666-T	0.00701300000000005	2E-12		0.09636286	[0.069-0.123] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1263298	1263299	rs968698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	CIRBP	rs968698-C	0.887726	4E-19		0.0320344	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1263298	1263299	rs968698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	CIRBP	rs968698-C	0.887721	2E-19		0.03173202	[0.025-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
594	chr19	1277426	1277427	rs757293	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.3		rs757293-C	NR	1E-14		0.0348	[0.026-0.044] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
594	chr19	1277426	1277427	rs757293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs757293-C	0.920537	1E-20				Affymetrix, Illumina [24246363] (imputed)	N
594	chr19	1277426	1277427	rs757293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs757293-C	0.920157	2E-20				Affymetrix, Illumina [20825802] (imputed)	N
594	chr19	1277426	1277427	rs757293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs757293-?	NR	4E-12				NR [~ 8900000] (imputed)	N
594	chr19	1277426	1277427	rs757293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs757293-?	NR	2E-20				NR [~ 8900000] (imputed)	N
594	chr19	1287386	1287387	rs10417091	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	19p13.3	EFNA2	rs10417091-?	0.089	3E-6		22.83	[13.39-32.27] unit increase	Illumina [7663546] (imputed)	N
595	chr19	1322311	1322312	rs758147	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (parent-of-origin effect)	247 European ancestry trios, 7 European ancestry father-child pairs, 33 European ancestry mother-child pairs, 14 European ancestry affected child	NA	19p13.3	RPS15P9, MUM1	rs758147-?	NR	1E-6				Illumina [NR]	N
595	chr19	1323930	1323931	rs1974565	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	19p13.3		rs1974565-A	0.0553747	2E-6		0.0282218	[0.017-0.04] unit decrease	Illumina [13900000] (imputed)	N
595	chr19	1327669	1327670	rs10424550	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	19p13.3		rs10424550-G	0.0471865	3E-6		0.0284752	[0.017-0.04] unit decrease	Illumina [13900000] (imputed)	N
595	chr19	1347438	1347439	rs10417609	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	19p13.3	intergenic	rs10417609-A	NR	4E-6	(AA)			Illumina [up to 11995908] (imputed)	N
595	chr19	1370525	1370526	rs2668423	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	19p13.3	MUM1	rs2668423-T	0.33	1E-6		1.3	[1.16-1.43]	Illumina [93606]	N
595	chr19	1423198	1423199	rs4807927	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		19p13.3	DAZAP1	rs4807927-A	0.94	6E-6		0.147	[0.084-0.21] unit increase	Illumina [~ 2400000] (imputed)	N
595	chr19	1423198	1423199	rs4807927	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	19p13.3	DAZAP1	rs4807927-A	0.94	1E-6		0.207	[0.12-0.29] unit increase	Illumina [~ 2400000] (imputed)	N
595	chr19	1435770	1435771	rs3760994	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.3		rs3760994-A	NR	2E-12		0.0127	[0.0092-0.0162] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
595	chr19	1435770	1435771	rs3760994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	RPS15	rs3760994-A	0.496242	8E-15		0.01708334	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
595	chr19	1435770	1435771	rs3760994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	RPS15	rs3760994-A	0.496267	8E-12		0.015083417	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
595	chr19	1435770	1435771	rs3760994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	RPS15	rs3760994-A	0.496256	8E-12		0.015075411	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
595	chr19	1435770	1435771	rs3760994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs3760994-A	0.437652	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
595	chr19	1435770	1435771	rs3760994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs3760994-?	NR	2E-16				NR [~ 8900000] (imputed)	N
595	chr19	1435770	1435771	rs3760994	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	19p13.3	DAZAP1	rs3760994-G	0.5084	4E-11		0.144	[0.1-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
596	chr19	1471857	1471858	rs546547223	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	19p13.3	APC2, C19orf25	rs546547223-T	0.0031	5E-6		0.6265	[0.36-0.9] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr19	1475648	1475649	rs757243111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	19p13.3	C19orf25	rs757243111-T	0.0014	3E-6		1.8837	[1.09-2.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
596	chr19	1526263	1526264	rs10411643	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	19p13.3		rs10411643-G	NR	8E-6		1.357589	[1.22-1.49]	Illumina [11600722] (imputed)	N
596	chr19	1543770	1543771	rs180958289	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	19p13.3	NR	rs180958289-?	0.02	5E-9		7.78	[3.92-15.5]	Affymetrix, Illumina [~ 6000000] (imputed)	N
597	chr19	1634594	1634595	rs740436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	TCF3	rs740436-C	0.25693	5E-9		0.014805009	[0.0098-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr19	1637051	1637052	rs77866734	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment	323 European ancestry bipolar disorder responder cases, 6,684 European ancestry controls	NA	19p13.3	TCF3, KIR3DP1, KIR2DL4	rs77866734-T	0.02	1E-7		3.7	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
597	chr19	1642506	1642507	rs4807942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs4807942-C	0.136537	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
597	chr19	1646711	1646712	rs4807125	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.3	NR	rs4807125-C	0.8476	3E-8		0.0326	[0.021-0.044] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
597	chr19	1647694	1647695	rs59778223	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	19p13.3	TCF3	rs59778223-A	0.03	8E-7	(African American)	0.75	[0.46-1.04] unit increase	Illumina [up to 13042663] (imputed)	N
597	chr19	1650133	1650134	rs1860661	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	19p13.3	TCF3	rs1860661-A	NR	9E-6		1.16	[1.09-1.24]	Illumina [> 10000000] (imputed)	N
597	chr19	1650133	1650134	rs1860661	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	19p13.3	TCF3	rs1860661-?	NR	4E-10		1.23	[1.16-1.32]	Affymetrix, Illumina [1004829] (imputed)	N
597	chr19	1683892	1683893	rs77943404	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	19p13.3		rs77943404-A	0.152409	6E-7		1.2473494	NR	Affymetrix [7846216] (imputed)	N
598	chr19	1753600	1753600	rs201777958	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	19p13.3	NR	rs201777958-CAGCG	0.0368	3E-6		0.3715	[0.22-0.53] unit decrease	Illumina [10677593] (imputed)	N
598	chr19	1803581	1803582	rs7253430	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	ATP8B3	rs7253430-A	0.132	7E-6	(TSH )	0.02	[NR] uIU/mL increase	Illumina [899892]	N
598	chr19	1811602	1811603	rs7250872	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	19p13.3	NR	rs7250872-T	0.69	2E-6		1.21	[1.12-1.31]	Affymetrix, Illumina [2366197] (imputed)	N
598	chr19	1813206	1813207	rs7259484	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19p13.3	ATP8B3	rs7259484-A	0.6531	4E-9		0.0211	[0.014-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
598	chr19	1814024	1814025	rs12977787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19p13.3	NR	rs12977787-A	0.541424	7E-9		0.0152523	[0.0097-0.0208] unit increase	Affymetrix [16580851] (imputed)	N
598	chr19	1819124	1819125	rs2396359	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19p13.3	REXO1	rs2396359-T	0.7638	2E-11		0.0147	[0.01-0.019] unit increase	Illumina [246328]	N
598	chr19	1819735	1819736	rs749109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.3		rs749109-?	NR	1E-7				NR [~ 8900000] (imputed)	N
598	chr19	1825480	1825480	rs112933999	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19p13.3	NR	rs112933999-AT	0.53902	5E-10		0.0148387	[0.0099-0.0198] unit increase	Affymetrix [16585745] (imputed)	N
598	chr19	1826111	1826112	rs2304615	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	19p13.3	REXO1	rs2304615-?	NR	4E-8				NR [~ 24000000] (imputed)	N
598	chr19	1831866	1831867	rs144020965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19p13.3		rs144020965-A	NR	4E-16		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
598	chr19	1832316	1832317	rs8102879	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.3		rs8102879-?	NR	7E-10				NR [~ 8900000] (imputed)	N
599	chr19	1838984	1838985	rs11084909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19p13.3		rs11084909-A	NR	4E-10		0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
599	chr19	1839254	1839254	rs550126599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.3		rs550126599-CAA	NR	2E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
599	chr19	1843625	1843626	rs893540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs893540-?	NR	6E-11				NR [~ 8900000] (imputed)	N
599	chr19	1847198	1847199	rs11670190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	REXO1	rs11670190-G	0.529038	7E-24		0.02279435	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1847198	1847199	rs11670190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	REXO1	rs11670190-G	0.529076	1E-18		0.020141654	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1849146	1849147	rs35917007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.3		rs35917007-?	NR	4E-23				NR [~ 8900000] (imputed)	N
599	chr19	1852493	1852494	rs3746038	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.3	NA	rs3746038-T	0.2162	3E-16		0.0173	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
599	chr19	1852493	1852494	rs3746038	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19p13.3	NA	rs3746038-T	0.2162	3E-16		0.0173	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
599	chr19	1852581	1852582	rs1054972	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	19p13.3		rs1054972-?	NR	2E-8		0.0133	NR unit decrease	NR [4548414] (imputed)	N
599	chr19	1854934	1854935	rs4806812	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs4806812-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
599	chr19	1855582	1855583	rs74401481	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.3		rs74401481-C	0.975	4E-55		0.66	[0.57-0.74] % increase	Affymetrix [NR] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025587	5E-12		0.05836806	[0.042-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025636	3E-18		0.073523864	[0.057-0.09] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025581	3E-121		0.20068003	[0.18-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.0255300000000001	4E-99		0.18287872	[0.17-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025632	2E-87		0.164281	[0.15-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025637	6E-63		0.13909158	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025579	3E-27		0.09141576	[0.075-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025594	2E-22		0.081881195	[0.065-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	KLF16	rs74401481-T	0.025595	5E-18		0.07260175	[0.056-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs74401481-T	0.0253914	1E-97				Affymetrix, Illumina [24246363] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.3	NR	rs74401481-T	0.026004	2E-101		0.15875	[0.14-0.17] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs74401481-T	0.0253941	3E-70				Affymetrix, Illumina [20825802] (imputed)	N
599	chr19	1855582	1855583	rs74401481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.3	NR	rs74401481-T	0.026008	8E-74		0.136327	[0.12-0.15] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
599	chr19	1855582	1855583	rs74401481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs74401481-?	NR	2E-14				NR [~ 8900000] (imputed)	N
599	chr19	1855582	1855583	rs74401481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs74401481-?	NR	5E-78				NR [~ 8900000] (imputed)	N
599	chr19	1855582	1855583	rs74401481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.3	KLF16	rs74401481-T	0.0272	2E-15		0.1110367	[0.084-0.138] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr19	1855582	1855583	rs74401481	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.3	KLF16	rs74401481-T	0.0272	2E-12		0.09912361	[0.072-0.127] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr19	1857296	1857297	rs10411759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs10411759-A	0.1577	2E-10	(MTAG)	0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr19	1857296	1857297	rs10411759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.3		rs10411759-A	0.1561	3E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
599	chr19	1857296	1857297	rs10411759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.3	Intergenic	rs10411759-A	0.1561	2E-11	(MTAG)	0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr19	1857296	1857297	rs10411759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.3	Intergenic	rs10411759-A	0.1538	2E-9	(MTAG)	0.0192	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr19	1858182	1858183	rs893541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.3		rs893541-?	NR	2E-10				NR [~ 8900000] (imputed)	N
599	chr19	1860146	1860147	rs4806814	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.3	KLF16	rs4806814-G	0.84213	3E-11		0.0126512	[0.0089-0.0164] unit increase	Affymetrix [12370749]	N
599	chr19	1864600	1864601	rs3810417	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	19p13.3		rs3810417-T	0.159469	6E-8		1.1293055	NR	Affymetrix [7846216] (imputed)	N
599	chr19	1864959	1864960	rs12972800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	KLF16	rs12972800-A	0.550697	3E-10		0.014133082	[0.0097-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr19	1865672	1865673	rs28626548	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	19p13.3		rs28626548-?	NR	5E-6		1.11007	[1.07-1.15]	NR [680312]	N
599	chr19	1866114	1866115	rs12974458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.3		rs12974458-?	NR	2E-14				NR [~ 8900000] (imputed)	N
599	chr19	1866426	1866427	rs10411032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	KLF16	rs10411032-C	0.171004	3E-9		0.01740534	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1866426	1866427	rs10411032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	KLF16	rs10411032-C	0.171017	1E-9		0.018063946	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1868786	1868787	rs111703420	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	19p13.3	KLF16	rs111703420-G	0.0289741789670652	8E-6		0.0074621	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
599	chr19	1890658	1890659	rs8107998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs8107998-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
599	chr19	1937192	1937193	rs11672550	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	19p13.3	CSNK1G2	rs11672550-T	0.435	9E-6		1.272	[1.144 - 1.414]	Illumina [5398302] (imputed)	N
599	chr19	1937192	1937193	rs11672550	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.3	CSNK1G2	rs11672550-T	0.577	3E-7	(EA)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr19	1937192	1937193	rs11672550	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.3	CSNK1G2	rs11672550-T	0.575	2E-6	(EA, women)	0.024	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr19	1937192	1937193	rs11672550	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.3	CSNK1G2	rs11672550-T	0.575	1E-7		0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
599	chr19	1946184	1946185	rs56307353	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.3	CSNK1G2, CSNK1G2-AS1	rs56307353-T	0.533	8E-6		0.03	[0.016-0.044] unit increase	Affymetrix [7947838] (imputed)	N
599	chr19	1948475	1948476	rs2083226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs2083226-C	0.178141	2E-18				Affymetrix, Illumina [22063850] (imputed)	N
599	chr19	1950863	1950864	rs62129471	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.3	NR	rs62129471-G	0.341816	2E-9		0.0123309	[0.0083-0.0164] unit decrease	NR [NR]	N
599	chr19	1956523	1956524	rs8100279	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs8100279-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
599	chr19	1957516	1957517	rs8103761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	CSNK1G2	rs8103761-A	0.171002	1E-15		0.02354399	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
599	chr19	1957516	1957517	rs8103761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.3	NR	rs8103761-C	0.828871	1E-19		0.023804	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
599	chr19	1957516	1957517	rs8103761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs8103761-?	NR	6E-16				NR [~ 8900000] (imputed)	N
600	chr19	1970020	1970021	rs2074881	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.3	NA	rs2074881-T	0.1875	2E-12		0.016	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
600	chr19	1975216	1975217	rs4807188	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	19p13.3	CSNK1G2	rs4807188-A	0.02	2E-6		2.8	[1.83-4.27]	Affymetrix [645639] (imputed)	N
600	chr19	2003784	2003785	rs7252328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	BTBD2	rs7252328-G	0.153497	1E-9		0.01939108	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
600	chr19	2003784	2003785	rs7252328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	BTBD2	rs7252328-G	0.153484	4E-15		0.025024435	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
600	chr19	2003784	2003785	rs7252328	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs7252328-G	0.153147	8E-19		0.025456	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
600	chr19	2004964	2004965	rs8110061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8110061-T	0.190305	5E-19				Affymetrix, Illumina [24588908] (imputed)	N
600	chr19	2007314	2007315	rs35564315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.3	BTBD2	rs35564315-A	0.165745	6E-18		0.026199372	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
600	chr19	2007910	2007911	rs57274573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.3	BTBD2	rs57274573-T	0.1692	8E-9		0.02802104	[0.018-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
600	chr19	2010569	2010570	rs12984886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs12984886-G	0.854997	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
600	chr19	2010569	2010570	rs12984886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.3	NR	rs12984886-G	0.84985	1E-11		0.018534	[0.013-0.024] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
600	chr19	2011091	2011092	rs75320628	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	3,405 European ancestry mothers	NA	19p13.3	BTBD2	rs75320628-T	NR	5E-8		0.378	[0.24-0.51] unit increase	Illumina [7360988] (imputed)	N
600	chr19	2038818	2038819	rs2287002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19p13.3	Intergenic	rs2287002-G	0.7412	9E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
600	chr19	2048280	2048281	rs12610177	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	19p13.3	NR	rs12610177-T	0.317	3E-6		0.015627421	[0.009-0.0222] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
600	chr19	2050822	2050823	rs3746101	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	19p13.3	MKNK2	rs3746101-T		2E-8	(EA)			NR [8012124] (imputed)	N
601	chr19	2098014	2098015	rs7253456	30242241	Hachiya T	2018-09-21	Sci Rep	Genome-wide analysis of polymorphism x sodium interaction effect on blood pressure identifies a novel 3'-BCL11B gene desert locus.	Diastolic blood pressure x sodium interaction (1df test)	4,527 Japanese ancestry individuals	4,241 Japanese ancestry individuals	19p13.3	intergenic	rs7253456-T	0.774	5E-6	(additive model)	0.023	[0.013-0.033] unit decrease	Illumina [7135436] (imputed)	N
601	chr19	2099249	2099250	rs11668205	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	19p13.3	NR	rs11668205-?		5E-6		2.14	[NR]	Illumina [NR] (imputed)	N
601	chr19	2101454	2101454	rs113462542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	AP3D1	rs113462542-ACCACACACGC	0.237174	1E-10		0.017033428	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2103185	2103186	rs8106338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.3	C19orf36	rs8106338-?	NR	3E-6	(gamma aminoisobutyric acid)	1.9730343	[1.15-2.8] unit increase	Affymetrix [at least 2500000] (imputed)	N
601	chr19	2109156	2109157	rs25673	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p13.3	NR	rs25673-?	NR	1E-21				Affymetrix [NR]	N
601	chr19	2119317	2119318	rs62128375	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.3	AP3D1	rs62128375-T	0.1383	9E-6		0.045	[0.025-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr19	2120458	2120459	rs188076989	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	19p13.3	AP3D1	rs188076989-A	0.0074	3E-6		0.927	[0.54-1.32] mmHg increase	Affymetrix [NR] (imputed)	N
601	chr19	2120458	2120459	rs188076989	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	19p13.3	AP3D1	rs188076989-A	0.0074	1E-10		0.9033	[0.63-1.18] mmHg increase	Affymetrix [NR] (imputed)	N
601	chr19	2123927	2123928	rs75483641	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19p13.3	NR	rs75483641-T	0.167412	8E-10		0.0256349	[0.017-0.034] unit decrease	NR [19129689] (imputed)	N
601	chr19	2127271	2127272	rs4807203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.3	NR	rs4807203-G	0.232183	2E-10		0.015181	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
601	chr19	2127271	2127272	rs4807203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs4807203-?	NR	2E-8				NR [~ 8900000] (imputed)	N
601	chr19	2131674	2131675	rs35976665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.3	AP3D1	rs35976665-C	NR	4E-10		0.0178314	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
601	chr19	2131674	2131675	rs35976665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.3	AP3D1	rs35976665-C	NR	3E-9		0.0169654	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
601	chr19	2131674	2131675	rs35976665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	AP3D1	rs35976665-C	NR	1E-15		0.0228543	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
601	chr19	2135713	2135714	rs35917214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.3		rs35917214-G	0.162858	2E-15		0.0235382	[0.018-0.029] unit decrease	Illumina [13479295] (imputed)	N
601	chr19	2135713	2135714	rs35917214	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.3	AP3D1	rs35917214-?	NR	3E-18		0.036406696	[0.028-0.045] unit decrease	Illumina [27896057] (imputed)	N
601	chr19	2136702	2136703	rs4806831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	AP3D1	rs4806831-T	NR	9E-17		0.0258012	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
601	chr19	2151514	2151515	rs147018632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	AP3D1	rs147018632-A	NR	6E-9		0.0238213	[0.016-0.032] unit decrease	Affymetrix [323123] (imputed)	N
601	chr19	2153899	2153900	rs146657690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	19p13.3	NR	rs146657690-C	0.731282	4E-11		0.029524	[0.021-0.038] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
601	chr19	2154722	2154723	rs183203602	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	19p13.3	AP3D1	rs183203602-T	0.0072	6E-9		1.065	[0.71-1.42] mmHg increase	Affymetrix [NR] (imputed)	N
601	chr19	2154722	2154723	rs183203602	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	19p13.3	AP3D1	rs183203602-T	0.0072	6E-15		1.0299	[0.77-1.29] mmHg increase	Affymetrix [NR] (imputed)	N
601	chr19	2155041	2155042	rs12985850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.3	AP3D1	rs12985850-A	NR	2E-11		0.0213661	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
601	chr19	2155041	2155042	rs12985850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs12985850-?	NR	1E-103				NR [~ 8900000] (imputed)	N
601	chr19	2155496	2155497	rs12973528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.3		rs12973528-T	NR	8E-9		0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
601	chr19	2155496	2155497	rs12973528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	AP3D1	rs12973528-T	NR	2E-20		0.0269233	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
601	chr19	2156953	2156954	rs72983502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	AP3D1	rs72983502-C	NR	3E-8		0.0212247	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
601	chr19	2157166	2157167	rs7249081	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.3	NR	rs7249081-?	NR	2E-14		0.17007	[0.13-0.21] unit increase	Affymetrix [7794483] (imputed)	N
601	chr19	2157166	2157167	rs7249081	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.3	NR	rs7249081-?	NR	1E-10	(male)	0.22619	[0.16-0.29] unit increase	Affymetrix [7794483] (imputed)	N
601	chr19	2157166	2157167	rs7249081	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.3	NR	rs7249081-T	0.5246	6E-14		0.0148	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
601	chr19	2158227	2158228	rs34656141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	AP3D1	rs34656141-T	0.400574	7E-49		0.033234447	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2158397	2158398	rs6510645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	AP3D1	rs6510645-C	NR	1E-30		0.0356102	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
601	chr19	2159570	2159571	rs12985258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19p13.3		rs12985258-C	NR	7E-42		0.0235	[0.02-0.027] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
601	chr19	2160528	2160529	rs3803915	24916648	Hirokawa M	2014-06-11	Eur J Hum Genet	A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese.	Myocardial infarction	1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls	11,412 Japanese ancestry cases, 28,397 Japanese ancestry controls	19p13.3	AP3D1, SF3A2, DOT1L	rs3803915-C	0.19	4E-9		1.12	[1.09-1.16]	Illumina [455781]	N
601	chr19	2160528	2160529	rs3803915	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	19p13.3	NR	rs3803915-C	0.89	5E-6	(females + males)	0.13	[NR] kg decrease	Illumina [318237]	N
601	chr19	2161320	2161321	rs57908212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.3		rs57908212-C	NR	1E-39		0.0227	[0.019-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
601	chr19	2161320	2161321	rs57908212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	AP3D1	rs57908212-C	0.473034	1E-40		0.02955391	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2161320	2161321	rs57908212	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19p13.3	DOT1L	rs57908212-C		2E-39		0.029	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
601	chr19	2161320	2161321	rs57908212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs57908212-?	NR	7E-46				NR [~ 8900000] (imputed)	N
601	chr19	2161320	2161321	rs57908212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.3	AP3D1	rs57908212-C	0.4747	6E-15		0.02806394	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
601	chr19	2161320	2161321	rs57908212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19p13.3	AP3D1	rs57908212-C	0.4748	3E-14		0.02720681	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
601	chr19	2161320	2161321	rs57908212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19p13.3	AP3D1	rs57908212-C	0.4748	1E-17		0.03051021	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
601	chr19	2161442	2161443	rs8102624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.3		rs8102624-A	NR	6E-38		0.0366	[0.031-0.042] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
601	chr19	2161442	2161443	rs8102624	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	DOT1L	rs8102624-A	0.1779	9E-25		0.4062	[0.33-0.48] mmHg increase	Affymetrix [NR] (imputed)	N
601	chr19	2163770	2163771	rs36065733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19p13.3		rs36065733-G	NR	2E-47		0.0235	[0.02-0.027] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.490443	7E-57				Affymetrix, Illumina [24332387] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.474605	7E-50		0.028857	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.489972	7E-62				Affymetrix, Illumina [24653286] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.474727	4E-54		0.03001	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.490115	3E-65				Affymetrix, Illumina [24558453] (imputed)	N
601	chr19	2163770	2163771	rs36065733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19p13.3	NR	rs36065733-G	0.474797	4E-56		0.030647	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
601	chr19	2164350	2164351	rs12985346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	AP3D1	rs12985346-A	0.400983	2E-46		0.032336667	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2165841	2165842	rs12610645	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	19p13.3	DOT1L	rs12610645-?	NR	1E-8		0.02543	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
601	chr19	2167877	2167878	rs4807205	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.3	DOT1L	rs4807205-G	NR	8E-9		1.12	[1.08-1.16]	Illumina [3860730] (imputed)	N
601	chr19	2167877	2167878	rs4807205	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.3	DOT1L	rs4807205-G	0.467	3E-6		1.14	[1.09-1.19]	Illumina [at least 3860730]	N
601	chr19	2167877	2167878	rs4807205	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	19p13.3	DOT1L	rs4807205-?	NR	4E-8		0.02369	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
601	chr19	2170953	2170954	rs12986413	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	19p13.3	NR	rs12986413-?	NR	5E-7		0.02855656	[0.017-0.04] unit increase	Illumina [34656550] (imputed)	N
601	chr19	2170953	2170954	rs12986413	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	19p13.3	DOT1L	rs12986413-T	0.45	3E-8		0.31	[0.21-0.46] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
601	chr19	2172832	2172835	rs148574708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.3		rs148574708-C	NR	9E-14		0.0277	[0.02-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
601	chr19	2173835	2173836	rs11882273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.3	NR	rs11882273-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
601	chr19	2173835	2173836	rs11882273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.3		rs11882273-?	NR	4E-14				NR [~ 8900000] (imputed)	N
601	chr19	2175004	2175005	rs8112948	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	DOT1L	rs8112948-A	0.2856	4E-42		0.0297	[0.025-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
601	chr19	2175890	2175891	rs12982593	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	19p13.3	NR	rs12982593-?	NR	9E-7				Affymetrix, Illumina [2500000] (imputed)	N
601	chr19	2176402	2176403	rs11880992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.3		rs11880992-A	NR	6E-13		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
601	chr19	2176402	2176403	rs11880992	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	19p13.3	NR	rs11880992-?	NR	2E-6		0.0284501	[0.017-0.04] unit increase	Illumina [34656550] (imputed)	N
601	chr19	2176402	2176403	rs11880992	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	DOT1L	rs11880992-G	0.58949	1E-18		0.0166298	[0.013-0.02] unit increase	NR [13737936] (imputed)	N
601	chr19	2176402	2176403	rs11880992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs11880992-?	NR	1E-24				NR [~ 8900000] (imputed)	N
601	chr19	2176402	2176403	rs11880992	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs11880992-?	NR	4E-16		0.016953	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
601	chr19	2176402	2176403	rs11880992	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	19p13.3	DOT1L	rs11880992-A	0.4	3E-16		0.095	[0.071-0.119] unit increase	Illumina [2385183] (imputed)	N
601	chr19	2176402	2176403	rs11880992	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.3	DOT1L	rs11880992-A	0.398	7E-28		0.033	[0.027-0.039] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
601	chr19	2176402	2176403	rs11880992	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	19p13.3	DOT1L	rs11880992-A	0.39	2E-12		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
601	chr19	2176585	2176586	rs12459350	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	19p13.3	NR	rs12459350-A	0.54	5E-15		0.014	[0.011-0.017] unit increase	Affymetrix [2446094] (imputed)	N
601	chr19	2176585	2176586	rs12459350	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	19p13.3	NR	rs12459350-A	0.54	5E-8				Affymetrix [2446094] (imputed)	N
601	chr19	2176585	2176586	rs12459350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	19p13.3	NR	rs12459350-A	0.5422	2E-16		0.0141	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
601	chr19	2176585	2176586	rs12459350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.3	NA	rs12459350-A	0.5423	2E-15		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
601	chr19	2176585	2176586	rs12459350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	19p13.3	NR	rs12459350-A	0.5423	2E-15		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
601	chr19	2177192	2177193	rs12982744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.3		rs12982744-G	NR	7E-57		0.0214	[0.019-0.024] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
601	chr19	2177192	2177193	rs12982744	22566624	Castano Betancourt MC	2012-05-07	Proc Natl Acad Sci U S A	Genome-wide association and functional studies identify the DOT1L gene to be involved in cartilage thickness and hip osteoarthritis.	Osteoarthritis	6,523 European ancestry individuals	4,442 European ancestry individuals	19p13.3	DOT1L	rs12982744-G	0.39	1E-11		0.09	[NR] mm increase	Illumina [2455290] (imputed)	N
601	chr19	2177192	2177193	rs12982744	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.3	DOT1L	rs12982744-C	0.6	3E-16		0.03	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
601	chr19	2177624	2177625	rs55678414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.3		rs55678414-G	NR	7E-17		0.0249	[0.019-0.031] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
601	chr19	2177624	2177625	rs55678414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.3		rs55678414-?	NR	2E-17				NR [~ 8900000] (imputed)	N
601	chr19	2177624	2177625	rs55678414	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	19p13.3	DOT1L	rs55678414-T	0.7375	8E-20	(East Asian)	0.4537	[0.36-0.55] unit decrease	Illumina [6200000] (imputed)	N
601	chr19	2177624	2177625	rs55678414	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	19p13.3	DOT1L	rs55678414-?	NR	1E-12		0.03061	[0.022-0.039] unit increase	Illumina [6108953] (imputed)	N
601	chr19	2177925	2177926	rs71176524	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19p13.3		rs71176524-?	0.5478	1E-7		0.0158	[0.0099-0.0217] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
601	chr19	2177925	2177926	rs71176524	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	19p13.3		rs71176524-?	0.5478	3E-7		0.0315	[0.02-0.043] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
601	chr19	2177925	2177926	rs71176524	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	19p13.3		rs71176524-?	0.5676	7E-6		0.1495	[0.084-0.215] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
601	chr19	2177925	2177926	rs71176524	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	19p13.3		rs71176524-?	0.5478	5E-9		0.1052	[0.07-0.14] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
601	chr19	2181606	2181607	rs12980348	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.3	DOT1L	rs12980348-T	0.6027	3E-8		0.0358	[0.023-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
601	chr19	2181606	2181607	rs12980348	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.3	DOT1L	rs12980348-T	0.6075	9E-16	(EA)	0.0288	[0.022-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
601	chr19	2181606	2181607	rs12980348	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.3	DOT1L	rs12980348-T	0.6075	3E-13	(EA,men)	0.0382	[0.028-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
601	chr19	2181606	2181607	rs12980348	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.3	DOT1L	rs12980348-T	0.6075	2E-6	(EA, women)	0.0222	[0.013-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
601	chr19	2181756	2181762	rs576345045	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	intergenic	rs576345045-C	0.9566	3E-14		0.6448	[0.48-0.81] mmHg decrease	Affymetrix [NR] (imputed)	N
601	chr19	2183174	2183175	rs2864419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.3		rs2864419-?	NR	9E-9				NR [~ 8900000] (imputed)	N
601	chr19	2184004	2184005	rs12974139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	DOT1L	rs12974139-C	NR	8E-18		0.0267732	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
601	chr19	2184651	2184652	rs4806832	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs4806832-?	NR	5E-14		0.0152029	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
601	chr19	2184651	2184652	rs4806832	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	DOT1L	rs4806832-C	0.53474	2E-6	(men)	0.0236714	[0.014-0.034] unit increase	NR [17166351] (imputed)	N
601	chr19	2184651	2184652	rs4806832	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19p13.3	DOT1L	rs4806832-C	0.533855	3E-10		0.0207965	[0.014-0.027] unit increase	NR [17166351] (imputed)	N
601	chr19	2186756	2186757	rs8108461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	DOT1L	rs8108461-T	NR	9E-12		0.0212471	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
601	chr19	2186756	2186757	rs8108461	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	19p13.3	DOT1L	rs8108461-?	NR	3E-9		0.0257	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
601	chr19	2187275	2187276	rs2240128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.3	DOT1L	rs2240128-C	NR	9E-9		0.0244481	[0.016-0.033] unit increase	Affymetrix [319769] (imputed)	N
601	chr19	2187275	2187276	rs2240128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	DOT1L	rs2240128-C	0.126111	2E-10		0.021329587	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2187275	2187276	rs2240128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs2240128-C	0.143782	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
601	chr19	2187275	2187276	rs2240128	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.3	NR	rs2240128-C	0.12556	3E-12		0.020464	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
601	chr19	2187792	2187793	rs12608455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19p13.3		rs12608455-C	0.447309	3E-12		0.02394	[0.017-0.031] unit decrease	Illumina [13479135] (imputed)	N
601	chr19	2187792	2187793	rs12608455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	19p13.3	NR	rs12608455-T	0.539374	2E-11		0.032087	[0.023-0.042] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
601	chr19	2190773	2190774	rs2074553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.3	DOT1L	rs2074553-A	NR	8E-10		0.0173994	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
601	chr19	2190773	2190774	rs2074553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.3	DOT1L	rs2074553-A	NR	5E-9		0.0165507	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
601	chr19	2191979	2191980	rs3815145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	19p13.3	NR	rs3815145-T	0.396076	1E-10		0.027416	[0.019-0.036] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
601	chr19	2192014	2192015	rs3815146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	DOT1L	rs3815146-T	NR	8E-9		0.0169405	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
601	chr19	2192014	2192015	rs3815146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	DOT1L	rs3815146-T	NR	9E-14		0.0237278	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
601	chr19	2192322	2192323	rs3815147	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	DOT1L	rs3815147-C	NR	6E-14		0.0212193	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
601	chr19	2195064	2195065	rs12983546	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.3	NR	rs12983546-T	0.4703	8E-12		0.0135	[0.0096-0.0174] unit decrease	NR [~ 27400000] (imputed)	N
601	chr19	2195798	2195799	rs2269881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	19p13.3		rs2269881-G	0.568413	2E-11		0.02099	[0.015-0.027] unit increase	Illumina [13478948] (imputed)	N
601	chr19	2195798	2195799	rs2269881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	19p13.3		rs2269881-G	0.568018	3E-12		0.0221032	[0.016-0.028] unit increase	Illumina [13478961] (imputed)	N
601	chr19	2201897	2201898	rs2240130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	DOT1L	rs2240130-A	NR	5E-9		0.0202573	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
601	chr19	2206574	2206575	rs1003531	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.3	NR	rs1003531-?	NR	3E-7		5.128	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
601	chr19	2210268	2210269	rs3746159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	DOT1L	rs3746159-T	0.120289	6E-15		0.02732589	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2210268	2210269	rs3746159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	DOT1L	rs3746159-T	0.120268	1E-14		0.026885072	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
601	chr19	2214056	2214057	rs2074552	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19p13.3	NR	rs2074552-T	0.4791	2E-6		0.1056	[0.062-0.149] unit decrease	Illumina [up to 1980188] (imputed)	N
601	chr19	2215099	2215100	rs7246186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	DOT1L, AC004490.1	rs7246186-A	NR	5E-10		0.0200846	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
601	chr19	2224386	2224387	rs12459507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	19p13.3		rs12459507-C	0.269469	3E-8		0.0208472	[0.013-0.028] unit increase	Illumina [13477770] (imputed)	N
601	chr19	2224386	2224387	rs12459507	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.3	NR	rs12459507-A	0.7294	7E-10	(East Asian)	0.4484	[0.31-0.59] unit decrease	Illumina [6200000] (imputed)	N
601	chr19	2226675	2226676	rs3815308	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.3	NR	rs3815308-A	0.4348	7E-6	(EA)	0.0288	[0.016-0.041] unit increase	Illumina [~ 11800000] (imputed)	N
601	chr19	2226771	2226772	rs2302061	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.3	DOT1L	rs2302061-C	0.27	3E-6	(Japanese)	0.43	[0.25-0.61] unit increase	Illumina [6200000] (imputed)	N
601	chr19	2226771	2226772	rs2302061	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	19p13.3	DOT1L	rs2302061-C	0.267	3E-12	(Japanese)	0.4419	[0.32-0.57] unit increase	Illumina [6200000] (imputed)	N
601	chr19	2226771	2226772	rs2302061	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.3	DOT1L	rs2302061-C	0.163	6E-8		0.35	[0.21-0.49] unit increase	Illumina [247039]	N
601	chr19	2226771	2226772	rs2302061	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.3	DOT1L	rs2302061-C	0.163	2E-10		0.29	[0.19-0.39] unit increase	Illumina [247039]	N
602	chr19	2232048	2232049	rs740404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.3	DOT1L, PLEKHJ1	rs740404-A	NR	8E-9		0.02546	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
602	chr19	2232082	2232083	rs1558118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	19p13.3		rs1558118-T	0.249063	7E-16		0.0320197	[0.024-0.04] unit increase	Illumina [13477769] (imputed)	N
602	chr19	2232220	2232221	rs740406	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	19p13.3	AMH	rs740406-A	0.7639	2E-11	(Japanese)	0.4435	[0.31-0.57] unit decrease	Illumina [6200000] (imputed)	N
602	chr19	2232220	2232221	rs740406	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.3	DOT1L	rs740406-A		4E-8		0.326	unit decrease	Affymetrix [at least 2696785] (imputed)	N
602	chr19	2232220	2232221	rs740406	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	19p13.3	PLEKHJ1, SF3A2, DOT1L, AMH	rs740406-A	0.868075423692691	3E-15		0.5495422	[0.41-0.69] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
602	chr19	2243335	2243336	rs147872814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs147872814-?	NR	3E-8				NR [~ 8900000] (imputed)	N
602	chr19	2244848	2244849	rs45486197	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19p13.3	NA	rs45486197-A	0.0635	2E-12		0.0279	[0.02-0.036] unit increase	NR [~ 27400000] (imputed)	N
602	chr19	2245621	2245622	rs45521740	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.3	SF3A2	rs45521740-G	0.942508	1E-9		0.0180325	[0.012-0.024] unit decrease	Affymetrix [12370749]	N
602	chr19	2245621	2245622	rs45521740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs45521740-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
602	chr19	2245621	2245622	rs45521740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.3		rs45521740-?	NR	4E-11				NR [~ 8900000] (imputed)	N
602	chr19	2245621	2245622	rs45521740	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.3	NA	rs45521740-A	0.0555	3E-14		0.0317	[0.023-0.04] unit increase	NR [~ 27400000] (imputed)	N
602	chr19	2249476	2249477	rs10407022	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.3	AMH	rs10407022-T	0.8007	3E-8		0.2338	[0.15-0.32] mmHg decrease	Illumina [242296]	N
602	chr19	2256954	2256954	rs200181073	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.3	SF3A2, AMH, JSRP1	rs200181073-A	0.982525	4E-8	(-364 ms)	0.12643	[0.081-0.172] unit decrease	Affymetrix [10000000] (imputed)	N
602	chr19	2275078	2275079	rs2523178	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	19p13.3	C19orf35	rs2523178-A	0.67	8E-6		0.055	[0.031-0.079] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
602	chr19	2277914	2277915	rs36064137	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	19p13.3	NR	rs36064137-?	NR	5E-6		1.3388	[1.21-1.46]	Illumina [NR] (imputed)	N
602	chr19	2292292	2292293	rs145366197	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	19p13.3	LINGO3	rs145366197-?	NR	5E-6				Illumina [NR] (imputed)	N
602	chr19	2292292	2292293	rs145366197	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	19p13.3	LINGO3	rs145366197-?	NR	4E-6		2.3	[1.61-3.39]	Illumina [NR] (imputed)	N
602	chr19	2325004	2325005	rs8103741	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.3		rs8103741-A	0.822	5E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
602	chr19	2325004	2325005	rs8103741	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.3	Intergenic	rs8103741-A	0.822	1E-10	(MTAG)	0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
602	chr19	2341046	2341047	rs55818311	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	19p13.3	SPPL2B	rs55818311-T	0.6937	4E-10		0.0696	[0.048-0.091] unit decrease	NR [7784415] (imputed)	N
602	chr19	2354910	2354911	rs77855457	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs77855457-A	0.1156	6E-9	(MTAG)	0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
603	chr19	2363318	2363319	rs62120679	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	19p13.3	LSM7	rs62120679-T	0.31	7E-7		1.08	[1.05-1.11]	Illumina [11933700] (imputed)	N
603	chr19	2363318	2363319	rs62120679	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	19p13.3	SPPL2B	rs62120679-T	0.314	6E-7		1.097	[1.06-1.13]	Illumina [7893274] (imputed)	N
603	chr19	2389139	2389140	rs11881070	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	19p13.3	TMPRSS9	rs11881070-T	28.79	4E-9	(additive)	0.97	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
603	chr19	2389139	2389140	rs11881070	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	19p13.3		rs11881070-?	NR	4E-9		5.8904004	z score decrease	Affymetrix [NR] (imputed)	N
603	chr19	2403563	2403564	rs7248779	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	19p13.3	TMPRSS9	rs7248779-T	0.54	3E-6		0.07	[0.031-0.109] unit decrease	Illumina, Perlegen [2156702] (imputed)	N
603	chr19	2410483	2410484	rs4806846	23229837	Aragam N	2012-12-11	J Mol Neurosci	TMPRSS9 and GRIN2B are associated with neuroticism: a genome-wide association study in a European sample.	Neuroticism	2,748 European ancestry cases	NA	19p13.3	TMPRSS9	rs4806846-A	0.14	8E-6				Perlegen [437547]	N
603	chr19	2458652	2458653	rs546350165	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	19p13.3		rs546350165-?	NR	4E-6		0.879131	[0.51-1.25] unit decrease	Illumina [9901720] (imputed)	N
604	chr19	2522670	2522671	rs74407240	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19p13.3	NR	rs74407240-?	NR	9E-6	(Native Hawaiian)	0.705	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
604	chr19	2523780	2523781	rs4806862	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	GNG7	rs4806862-G	0.674467	3E-23		0.019781	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
604	chr19	2523780	2523781	rs4806862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs4806862-?	NR	1E-18				NR [~ 8900000] (imputed)	N
604	chr19	2523780	2523781	rs4806862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs4806862-?	NR	5E-26				NR [~ 8900000] (imputed)	N
604	chr19	2523780	2523781	rs4806862	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs4806862-?	NR	3E-27		0.0239498	[0.02-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
604	chr19	2529478	2529479	rs62121679	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	19p13.3	GNG7	rs62121679-?	NR	4E-6		0.182	[0.11-0.26] unit decrease	Illumina [at least 13000000] (imputed)	N
604	chr19	2536678	2536679	rs34181610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs34181610-?	NR	3E-9				NR [~ 8900000] (imputed)	N
604	chr19	2547014	2547015	rs6510683	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	NR	rs6510683-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
604	chr19	2588422	2588423	rs11672460	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.3		rs11672460-?	NR	3E-8				NR [~ 8900000] (imputed)	N
604	chr19	2599148	2599149	rs2965205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	GNG7	rs2965205-T	0.809279	4E-9		0.016690394	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
604	chr19	2607637	2607638	rs8113429	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.3	GNG7	rs8113429-G	0.540551090824305	2E-6	(G_Anaerostipes_RNT)	0.107547	[0.063-0.152] unit decrease	Illumina [7711310] (imputed)	N
605	chr19	2634822	2634823	rs72978712	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	19p13.3	GNG7	rs72978712-C	0.203585645195312	9E-11		0.0438	[0.03-0.057] SD increase	Illumina [22400000] (imputed)	N
605	chr19	2671099	2671100	rs59737437	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.3	GNG7	rs59737437-C	0.731104	4E-8		0.0118971	[0.0076-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
605	chr19	2671099	2671100	rs59737437	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.3	NR	rs59737437-C	0.730055	1E-8		0.0129049	[0.0085-0.0173] unit increase	NR [NR]	N
605	chr19	2686460	2686461	rs11878180	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	19p13.3	NR	rs11878180-?	NR	3E-8		1.0595	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
605	chr19	2687650	2687651	rs57549656	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19p13.3	NR	rs57549656-G	NR	5E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
605	chr19	2695660	2695661	rs10402849	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	19p13.3		rs10402849-T	0.2008	7E-9		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
605	chr19	2695660	2695661	rs10402849	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19p13.3	GNG7	rs10402849-T	0.2002	3E-9		1.0262383		Affymetrix [11880941] (imputed)	N
605	chr19	2710961	2710962	rs72980722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs72980722-?	NR	1E-7				NR [~ 8900000] (imputed)	N
605	chr19	2714169	2714170	rs185543003	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Ejection fraction in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	NR	rs185543003-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
605	chr19	2714370	2714371	rs201285129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	DIRAS1, AC006538.4	rs201285129-C	0.2054	3E-10		0.018696913	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
605	chr19	2728970	2728971	rs759072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.3	NR	rs759072-A	NR	1E-11		0.0298	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
606	chr19	2756885	2756886	rs117861498	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SGTA	rs117861498-?	NR	2E-9	(male)	3.7981	[NR] unit increase	Affymetrix [NR] (imputed)	N
606	chr19	2786725	2786726	rs2537854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs2537854-C	0.366012	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
606	chr19	2786763	2786763	rs550767741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.3	NR	rs550767741-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	0.294659	1E-60		0.0212886	[0.019-0.024] unit increase	Affymetrix [16585854] (imputed)	N
606	chr19	2786763	2786763	rs550767741	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.3	NR	rs550767741-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	0.294659	9E-48		0.021992	[0.019-0.025] unit increase	Affymetrix [16585866] (imputed)	N
606	chr19	2789336	2789337	rs1640267	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.3	NR	rs1640267-C	0.28554199999999996	2E-45		0.0167988	[0.014-0.019] unit increase	Affymetrix [16582621] (imputed)	N
606	chr19	2789336	2789337	rs1640267	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.3	NR	rs1640267-C	0.28554199999999996	6E-41		0.0172889	[0.015-0.02] unit increase	Affymetrix [16582614] (imputed)	N
606	chr19	2792033	2792034	rs1624295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19p13.3	NR	rs1624295-A	0.29288800000000004	7E-24		0.0328259	[0.026-0.039] unit increase	Affymetrix [16577313] (imputed)	N
606	chr19	2792565	2792566	rs759068	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.3	NR	rs759068-A	0.29413500000000004	5E-16		0.0114466	[0.0087-0.0142] unit increase	Affymetrix [16578495] (imputed)	N
606	chr19	2793193	2793194	rs1640269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs1640269-C	0.28632	9E-101		0.0188616	[0.017-0.021] unit increase	Affymetrix [16582909] (imputed)	N
606	chr19	2793193	2793194	rs1640269	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs1640269-C	0.28632	2E-85		0.0195357	[0.018-0.022] unit increase	Affymetrix [16582965] (imputed)	N
606	chr19	2795515	2795516	rs1736179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs1736179-A	0.299345	5E-16		0.016396	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
606	chr19	2800191	2800192	rs1640272	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19p13.3	NR	rs1640272-A	0.712846	4E-14		0.0211934	[0.016-0.027] unit increase	Affymetrix [16585745] (imputed)	N
606	chr19	2802091	2802092	rs2741991	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19p13.3	THOP1	rs2741991-?	NR	3E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
606	chr19	2803226	2803227	rs1640273	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	19p13.3	NR	rs1640273-C	0.712177	4E-11		0.0134802	[0.0095-0.0175] unit decrease	Affymetrix [15000001]	N
606	chr19	2806573	2806574	rs2537855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.3	NR	rs2537855-G	NR	8E-12		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
606	chr19	2806573	2806574	rs2537855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	19p13.3	NR	rs2537855-G	NR	3E-10		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
606	chr19	2806573	2806574	rs2537855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.3	NR	rs2537855-G	NR	4E-59		0.0447	[0.039-0.05] unit increase	Affymetrix [9000000] (imputed)	N
606	chr19	2809671	2809672	rs1736183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.3		rs1736183-G	NR	1E-10		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
606	chr19	2812152	2812153	rs941407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	THOP1	rs941407-G	0.288091	2E-14		0.018997902	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
606	chr19	2812152	2812153	rs941407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	THOP1	rs941407-G	0.288075	4E-12		0.017209824	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
606	chr19	2814180	2814181	rs941408	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.3	intergenic	rs941408-T	0.279	5E-10		0.0152	[0.01-0.02] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
606	chr19	2814180	2814181	rs941408	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.3	NR	rs941408-C	NR	2E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr19	2814180	2814181	rs941408	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.3	NR	rs941408-C	NR	1E-6		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
606	chr19	2814180	2814181	rs941408	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	19p13.3	THOP1	rs941408-T	0.29	8E-8	(Trans-ethnic initial)	0.02	[0.012-0.028] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
606	chr19	2873628	2873629	rs138451097	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19p13.3	ZNF556	rs138451097-A	0.01	3E-6		1.1628	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
606	chr19	2873628	2873629	rs138451097	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19p13.3	ZNF556	rs138451097-A	0.01	5E-7		1.0045	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
607	chr19	2893404	2893405	rs11671007	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	19p13.3	AC119403.1, ZNF57, ZNF556, ZNF555, ZNF77	rs11671007-G	NR	8E-6	(daytime resting duration, weekdays)	0.1667	[0.094-0.24] unit increase	Affymetrix [7141204] (imputed)	N
607	chr19	2920704	2920705	rs8105265	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	19p13.3	intergenic	rs8105265-A	0.1173	4E-6	(Complete)	0.5203	[0.3-0.74] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
607	chr19	2920805	2920806	rs113424746	30995994	Truong DT	2019-04-17	J Med Genet	Multivariate genome-wide association study of rapid automatised naming and rapid alternating stimulus in Hispanic American and African-American youth.	Rapid automised naming and rapid alternating stimulus test performance	883 Hispanic American children, 441 African American children	NA	19p13.3	lnc-ZNF77-1	rs113424746-A	0.056	3E-7				Illumina [1265623]	N
607	chr19	2934106	2934107	rs146879198	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	19p13.3	ZNF77	rs146879198-G	0.988	3E-28		25.0		Illumina [up to 244000]	N
607	chr19	2934106	2934107	rs146879198	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	19p13.3	ZNF77	rs146879198-G		1E-24		50.0		Illumina [31245]	N
607	chr19	2934106	2934107	rs146879198	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	19p13.3	ZNF77	rs146879198-G	0.988	3E-7		4.166667		Illumina [31514]	N
607	chr19	2934106	2934107	rs146879198	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	19p13.3	ZNF77	rs146879198-G	0.088	1E-8		12.5		Illumina [31245]	N
607	chr19	2955758	2955759	rs55893662	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	19p13.3	NR	rs55893662-T	0.11	5E-6		1.46	1.24-1.73	NR [8807005] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	AES	rs11539938-C	0.42065	2E-9		0.014006639	[0.0094-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs11539938-C	0.42118199999999995	2E-29		0.00999382	[0.0083-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.3	NR	rs11539938-C	0.42135900000000004	7E-12		0.00882183	[0.0063-0.0114] unit increase	Affymetrix [16585854] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.3	NR	rs11539938-C	0.420975	3E-19		0.0115293	[0.0091-0.0139] unit increase	Affymetrix [16582621] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs11539938-C	0.42118199999999995	7E-21		0.00944914	[0.0075-0.0114] unit increase	Affymetrix [16582965] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.3	NR	rs11539938-C	0.42135900000000004	7E-10		0.00882597	[0.0059-0.0118] unit increase	Affymetrix [16585866] (imputed)	N
608	chr19	3062856	3062857	rs11539938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.3	NR	rs11539938-C	0.420975	2E-14		0.0104066	[0.0079-0.013] unit increase	Affymetrix [16582614] (imputed)	N
608	chr19	3085045	3085046	rs12979014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3		rs12979014-T	0.681089	1E-10		0.015927898	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr19	3093990	3093991	rs11084997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.3		rs11084997-C	NR	3E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
608	chr19	3093990	3093991	rs11084997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.3		rs11084997-C	NR	1E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
608	chr19	3094214	3094215	rs190424317	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19p13.3	NR	rs190424317-G	0.1368	7E-54		0.005693	[0.005-0.0064] unit decrease	Affymetrix [NR] (imputed)	N
608	chr19	3096249	3096250	rs74672535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19p13.3	NR	rs74672535-G	NR	5E-11		0.0633	[0.044-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
608	chr19	3114863	3114864	rs3746069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.3	NR	rs3746069-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
608	chr19	3115525	3115526	rs2629103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.3		rs2629103-?	NR	4E-8				NR [~ 8900000] (imputed)	N
608	chr19	3121510	3121510	rs34944502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19p13.3		rs34944502-GC	NR	2E-54		0.0427	[0.037-0.048] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
608	chr19	3136090	3136091	rs117552144	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	19p13.3	GNA15	rs117552144-T	0.066751743030734	9E-9		0.07949903	[0.052-0.107] unit increase	Affymetrix [35186738] (imputed)	N
608	chr19	3136090	3136091	rs117552144	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19p13.3	GNA15	rs117552144-T	0.06393300000000002	4E-11		1.0897738	1.06237877984166-1.11787523000303]	NR [9572556] (imputed)	N
608	chr19	3136090	3136091	rs117552144	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	19p13.3	GNA15, LOC100996351, GNA11, S1PR4, NCLN, AES	rs117552144-T	0.06675	7E-10		1.08502	[1.06-1.11]	Affymetrix [32463443] (imputed)	N
608	chr19	3136090	3136091	rs117552144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	19p13.3	NR	rs117552144-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr19	3136090	3136091	rs117552144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	19p13.3		rs117552144-?	NR	4E-8				NR [~ 8900000] (imputed)	N
609	chr19	3148868	3148869	rs74675399	32066683	Lacaze P	2020-01-27	Transl Psychiatry	Genetic associations with clozapine-induced myocarditis in patients with schizophrenia.	Clozapine-induced myocarditis in schizophrenia	33 cases, 62 controls	NA	19p13.3	GNA15	rs74675399-A	0.07	1E-7		6.36	[2.28-17.8]	Illumina [6822414] (imputed)	N
609	chr19	3150417	3150418	rs2302063	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	19p13.3	GNA15	rs2302063-?		7E-8	(MCRI)	0.29	[0.15-0.43] unit decrease	Illumina [693128]	N
609	chr19	3159188	3159189	rs4807415	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	GNA15	rs4807415-A	0.540726	2E-9		0.0136785	[0.0096-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3159768	3159769	rs11880198	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	19p13.3	GNA15	rs11880198-?	0.13	6E-6	(EA)	1.23	[0.98-1.54]	Affymetrix, Illumina [2478304] (imputed)	N
609	chr19	3165049	3165050	rs1682806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	GNA15	rs1682806-A	0.513675	3E-10		0.014044955	[0.0097-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3165174	3165177	rs143819087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	GNA15	rs143819087-C	0.513453	2E-9		0.013427256	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3165238	3165239	rs1637659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.3	NR	rs1637659-A	0.514211	5E-10		0.012015	[0.0082-0.0158] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
609	chr19	3165479	3165480	rs146875993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	GNA15	rs146875993-C	0.0102139999999999	2E-9		0.06678533	[0.045-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3165479	3165480	rs146875993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	GNA15	rs146875993-C	0.0102179999999999	5E-13		0.080585904	[0.059-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3166639	3166640	rs72983079	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19p13.3	NR	rs72983079-?	NR	6E-6		2.38	[2.06-2.74]	Illumina [539000] (imputed)	N
609	chr19	3169673	3169686	rs772650273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs772650273-T	0.08012	8E-21		0.039999787	[0.032-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3169673	3169686	rs772650273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	S1PR4	rs772650273-T	0.080119	2E-16		0.035026792	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3176169	3176170	rs3760960	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.3	S1PR4	rs3760960-G	0.1237	2E-9		0.03247049	[0.022-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179020	3179021	rs34728133	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.3		rs34728133-?	NR	5E-8				Affymetrix [NR] (imputed)	N
609	chr19	3179020	3179021	rs34728133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs34728133-A	0.093232	3E-14		0.02908204	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179020	3179021	rs34728133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	S1PR4	rs34728133-A	0.093226	6E-15		0.02975538	[0.022-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010881	4E-10		0.06724035	[0.046-0.088] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010894	7E-15		0.08479512	[0.063-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0109010000000001	2E-15		0.08436071	[0.063-0.105] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010893	5E-16		0.086825125	[0.066-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010893	7E-16		0.086190924	[0.065-0.107] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010904	3E-12		0.07570408	[0.054-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0108819999999999	3E-9		0.063954964	[0.043-0.085] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010893	6E-13		0.0771101	[0.056-0.098] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.010892	4E-11		0.070731245	[0.05-0.092] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0109	2E-34		0.13060139	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0109050000000001	2E-34		0.13054438	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs61731111-C	0.989417	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.3	NR	rs61731111-C	0.989085	3E-14		0.070895	[0.053-0.089] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs61731111-T	0.0106213	1E-39				Affymetrix, Illumina [19872809] (imputed)	N
609	chr19	3179516	3179517	rs61731111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.3	NR	rs61731111-T	0.010939	8E-43		0.131975	[0.11-0.15] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
609	chr19	3179516	3179517	rs61731111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs61731111-?	NR	3E-44				NR [~ 8900000] (imputed)	N
609	chr19	3179516	3179517	rs61731111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0111	3E-13		0.1240686	[0.091-0.157] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179516	3179517	rs61731111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0111	3E-15		0.1344911	[0.1-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179516	3179517	rs61731111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0111	2E-17		0.1443517	[0.11-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179516	3179517	rs61731111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0111	1E-18		0.1502023	[0.12-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179516	3179517	rs61731111	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19p13.3	S1PR4	rs61731111-T	0.0111	1E-16		0.1410479	[0.11-0.17] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr19	3179883	3179884	rs3746072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.3		rs3746072-T	NR	2E-23		0.1385	[0.11-0.17] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
609	chr19	3179883	3179884	rs3746072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.3		rs3746072-T	NR	2E-25		0.11	[0.089-0.131] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Granulocyte Absolute Count	3,653 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.3		rs3746072-T	0.03944	5E-9		0.3791	[0.25-0.51] unit decrease	Illumina [18427377] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	S1PR4	rs3746072-T	0.00704099999999996	2E-102		0.28359088	[0.26-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	S1PR4	rs3746072-T	0.00701300000000005	3E-30		0.15162116	[0.13-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	S1PR4	rs3746072-T	0.00704700000000003	1E-11		0.08952805	[0.064-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3	S1PR4	rs3746072-T	0.00703600000000004	7E-9		0.07675727	[0.051-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	S1PR4	rs3746072-T	0.00702899999999995	9E-36		0.1651906	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs3746072-G	0.990175	1E-130				Affymetrix, Illumina [24649327] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs3746072-G	0.991269	1E-122				Affymetrix, Illumina [23114412] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs3746072-G	0.991123	6E-38				Affymetrix, Illumina [23467995] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.3	NR	rs3746072-G	0.992996	3E-35		0.146955	[0.12-0.17] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
609	chr19	3179883	3179884	rs3746072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs3746072-G	0.992967	1E-12		0.084911	[0.061-0.108] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
609	chr19	3180368	3180369	rs311632	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs311632-?	NR	5E-8				NR [~ 8900000] (imputed)	N
609	chr19	3180802	3180803	rs311629	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	19p13.3	S1PR4	rs311629-?	NR	2E-13		0.04039	[0.03-0.051] unit increase novel	Illumina [6108953] (imputed)	N
609	chr19	3182500	3182501	rs7252729	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.3		rs7252729-?	NR	5E-8				Affymetrix [NR] (imputed)	N
609	chr19	3197620	3197620	rs34357515	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	19p13.3		rs34357515-?	NR	1E-6	(clearcell)	1.69		Illumina [11595112] (imputed)	N
609	chr19	3203961	3203962	rs144284241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.3		rs144284241-T	NR	1E-69		0.2718	[0.24-0.3] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
609	chr19	3203961	3203962	rs144284241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.3		rs144284241-T	NR	7E-76		0.2833	[0.25-0.31] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	NCLN	rs144284241-T	0.00653700000000002	4E-32		0.16738507	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	NCLN	rs144284241-T	0.00653099999999995	2E-103		0.30689558	[0.28-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	NCLN	rs144284241-T	0.00654100000000002	2E-32		0.16811194	[0.14-0.2] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.3	NCLN	rs144284241-T	0.006525	5E-34		0.17353141	[0.15-0.2] unit increase	Affymetrix [93095623] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.3	NR	rs144284241-C	0.993425	3E-120		0.292838	[0.27-0.32] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.3	NR	rs144284241-C	0.993409	2E-119		0.300053	[0.27-0.33] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
609	chr19	3203961	3203962	rs144284241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs144284241-C	0.993515	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
609	chr19	3207337	3207338	rs312068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	19p13.3		rs312068-C	0.938183	2E-49		0.117314	[0.1-0.13] unit increase	Illumina [13479091] (imputed)	N
609	chr19	3207337	3207338	rs312068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	19p13.3		rs312068-C	0.938493	3E-36		0.136675	[0.12-0.16] unit increase	Illumina [13467171] (imputed)	N
609	chr19	3207337	3207338	rs312068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19p13.3		rs312068-C	0.938234	5E-11		0.0673627	[0.047-0.087] unit increase	Illumina [13471440] (imputed)	N
609	chr19	3207337	3207338	rs312068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	19p13.3	NR	rs312068-T	0.082816	6E-33		0.094449	[0.079-0.11] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
609	chr19	3207337	3207338	rs312068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	19p13.3	NR	rs312068-T	0.083052	7E-23		0.108683	[0.087-0.13] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
609	chr19	3207864	3207865	rs60781577	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.3	NCLN	rs60781577-?	NR	2E-9		0.021243665	[0.014-0.028] unit decrease	Illumina [27896057] (imputed)	N
609	chr19	3216945	3216946	rs368975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	19p13.3	NR	rs368975-?	NR	2E-11		0.04499	[0.032-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
609	chr19	3216945	3216946	rs368975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	19p13.3	NCLN, CELF5	rs368975-?	NR	9E-12		0.06128	[0.044-0.079] unit increase novel	Illumina [6108953] (imputed)	N
609	chr19	3220856	3220857	rs12461480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs12461480-?	NR	3E-21				NR [~ 8900000] (imputed)	N
609	chr19	3237488	3237489	rs4807428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.3		rs4807428-C	0.8934	2E-8	(conditional-joint)	0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr19	3251218	3251219	rs17764205	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.3	NR	rs17764205-?	NR	5E-6		1.3597	[NR]	Affymetrix [722112]	N
609	chr19	3272087	3272088	rs117948041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs117948041-?	NR	1E-8				NR [~ 8900000] (imputed)	N
609	chr19	3274769	3274770	rs312927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.3		rs312927-A	0.1203	3E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
609	chr19	3274769	3274770	rs312927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.3	Intergenic	rs312927-A	0.1203	5E-11	(MTAG)	0.0135	[0.0094-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr19	3283595	3283596	rs62125949	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.3	NR	rs62125949-C	0.1327	4E-15				NR [9056863] (imputed)	N
610	chr19	3285484	3285485	rs62125950	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.3		rs62125950-G	0.13	1E-14		7.7	z score increase	Affymetrix [9061022] (imputed)	N
610	chr19	3289080	3289081	rs62125958	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.3		rs62125958-T	0.12	2E-20		9.27	z score increase	Affymetrix [9061022] (imputed)	N
610	chr19	3295427	3295428	rs17674370	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.3		rs17674370-C	0.13	3E-9		5.96	z score increase	Affymetrix [9061022] (imputed)	N
610	chr19	3295427	3295428	rs17674370	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.3	NR	rs17674370-C	0.1292	2E-8				NR [9056863] (imputed)	N
610	chr19	3295427	3295428	rs17674370	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	19p13.3		rs17674370-?	NR	5E-8				NR [9705931] (imputed)	N
610	chr19	3297163	3297164	rs72989297	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	19p13.3	NR	rs72989297-G	0.133201	5E-11		0.06811308	[0.048-0.088] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
610	chr19	3316411	3316412	rs10417519	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19p13.3	NR	rs10417519-T	0.445121	4E-13		0.0226965	[0.017-0.029] unit increase	NR [19129689] (imputed)	N
610	chr19	3318509	3318510	rs11669592	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	19p13.3	intergenic	rs11669592-A	0.45	4E-6	(NAS)	1.31	[NR] unit decrease	Illumina [324623]	N
610	chr19	3336080	3336080	rs11460674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3		rs11460674-AG	0.568985	2E-9		0.013985462	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
610	chr19	3341450	3341451	rs72973028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19p13.3		rs72973028-C	NR	7E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
610	chr19	3341450	3341451	rs72973028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.3	NR	rs72973028-C	NR	3E-9		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
610	chr19	3353621	3353622	rs34466956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3		rs34466956-T	0.567563	4E-9		0.013238129	[0.0088-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
610	chr19	3353621	3353622	rs34466956	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	19p13.3	MFSD12	rs34466956-C	0.438882	2E-9				Affymetrix, Illumina [NR] (imputed)	N
610	chr19	3353621	3353622	rs34466956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs34466956-?	NR	6E-12				NR [~ 8900000] (imputed)	N
610	chr19	3353621	3353622	rs34466956	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	19p13.3	NFIC	rs34466956-?	NR	3E-8				Affymetrix, Illumina [7850345] (imputed)	N
610	chr19	3361725	3361726	rs55864511	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	19p13.3	NFIC	rs55864511-A	0.7597	4E-9		0.015510079	[0.01-0.021] unit increase	Affymetrix [11514463] (imputed)	N
610	chr19	3362002	3362003	rs117300545	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	19p13.3	NFIC	rs117300545-A	0.0274	7E-6		0.1397	[0.079-0.201] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
610	chr19	3375571	3375572	rs60018147	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.3	NR	rs60018147-G	NR	1E-9		0.0248	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs60018147-G	0.12042699999999995	3E-25		0.0138139	[0.011-0.016] unit increase	Affymetrix [16582909] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.3	NR	rs60018147-G	0.11985900000000005	6E-15		0.0155208	[0.012-0.019] unit increase	Affymetrix [16585854] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.3	NR	rs60018147-G	0.12103200000000003	2E-12		0.0127103	[0.0091-0.0163] unit increase	Affymetrix [16582621] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs60018147-G	0.12042699999999995	1E-19		0.0133112	[0.01-0.016] unit increase	Affymetrix [16582965] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.3	NR	rs60018147-G	0.11985900000000005	3E-9		0.0135186	[0.009-0.018] unit increase	Affymetrix [16585866] (imputed)	N
610	chr19	3375571	3375572	rs60018147	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.3	NR	rs60018147-G	0.12103200000000003	1E-12		0.01315	[0.0093-0.017] unit increase	Affymetrix [16582614] (imputed)	N
610	chr19	3375571	3375572	rs60018147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs60018147-?	NR	4E-27				NR [~ 8900000] (imputed)	N
610	chr19	3375571	3375572	rs60018147	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs60018147-?	NR	7E-23		0.033176	[0.027-0.04] unit increase	Affymetrix [20259828] (imputed)	N
610	chr19	3376041	3376042	rs76287541	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	NFIC	rs76287541-C	0.808427	3E-12		0.0165327	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
610	chr19	3380082	3380083	rs34827462	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	19p13.3	NFIC	rs34827462-C	0.846393	1E-10		1.0409421	NR	Affymetrix [~ 9600000] (imputed)	N
610	chr19	3382175	3382176	rs138699938	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	19p13.3		rs138699938-?	NR	5E-11		0.154484	[0.1-0.21] unit decrease	NR [9800000] (imputed)	N
610	chr19	3382175	3382176	rs138699938	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	19p13.3		rs138699938-?	NR	8E-12		0.171984	[0.12-0.22] unit decrease	NR [9800000] (imputed)	N
610	chr19	3382175	3382176	rs138699938	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	19p13.3		rs138699938-?	NR	1E-14		0.195316	[0.14-0.25] unit decrease	NR [9800000] (imputed)	N
610	chr19	3382175	3382176	rs138699938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs138699938-C	0.998303	2E-11		0.0669137	[0.047-0.087] unit increase	Affymetrix [16582909] (imputed)	N
610	chr19	3382175	3382176	rs138699938	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs138699938-C	0.998303	1E-7		0.05983	[0.038-0.082] unit increase	Affymetrix [16582965] (imputed)	N
610	chr19	3405591	3405592	rs9749589	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease (APOE e4 interaction)	8,271 European ancestry APOE e4+ cases, 3,480 European ancestry APOE e4+ controls, 4,829 European ancestry APOE e4- cases, 9,740 European ancestry APOE e4- controls, 865 African American APOE e4+ cases, 1,241 African American APOE e4+ control, 607 African American APOE 4e- cases, 2,270 African American APOE 4e- controls, 535 Japanese ancestry APOE 4e+ cases, 151  Japanese ancestry APOE 4+ controls, 416  Japanese ancestry APOE 4- cases, 743 Japanese ancestry APOE 4- controls, 51 Arab-Israeli ancestry APOE e4- cases, 64 Arab-Israeli ancestry e4- controls	3,062 European ancestry APOE e4+ cases, 8,977 European ancestry APOE e4+ controls, 2,751 European ancestry APOE e4- cases, 11,497 European ancestry APOE e4- controls	19p13.3	NFIC	rs9749589-T		2E-8		1.3157895	[1.2-1.45]	NR [NR]	N
611	chr19	3408664	3408665	rs4807462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs4807462-?	NR	1E-8				NR [~ 8900000] (imputed)	N
611	chr19	3408664	3408665	rs4807462	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.3	NFIC	rs4807462-A	0.6337	5E-7		0.0338	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr19	3410134	3410135	rs12980774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.3		rs12980774-C	NR	5E-15		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
611	chr19	3410134	3410135	rs12980774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	NFIC	rs12980774-C	0.221981	3E-12		0.018596843	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr19	3411097	3411098	rs4807465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	NFIC	rs4807465-C	0.9571493	5E-10		0.034300573	[0.023-0.045] unit increase	Affymetrix [93095623] (imputed)	N
611	chr19	3414087	3414088	rs12975319	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.3	NFIC	rs12975319-G	0.698154	7E-11		0.01363	[0.0095-0.0177] unit increase	Affymetrix [NR] (imputed)	N
611	chr19	3414087	3414088	rs12975319	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.3	NFIC	rs12975319-G	0.698093	4E-10		0.0134556	[0.0092-0.0177] unit increase	Affymetrix [NR] (imputed)	N
611	chr19	3414087	3414088	rs12975319	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.3	NFIC	rs12975319-A	0.3003	1E-9		0.0143	[0.0096-0.019] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
611	chr19	3428833	3428834	rs7507204	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.3	NFIC	rs7507204-C	0.24	4E-16		0.036	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
611	chr19	3433201	3433202	rs4807467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.3		rs4807467-A	0.53663	2E-14		0.0155851	[0.012-0.02] unit increase	Illumina [13479295] (imputed)	N
611	chr19	3433201	3433202	rs4807467	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.3	NFIC	rs4807467-?	NR	2E-19		0.026026035	[0.02-0.032] unit increase	Illumina [27896057] (imputed)	N
611	chr19	3434027	3434028	rs2074977	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.3	NFIC	rs2074977-A	0.637	2E-20		0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
611	chr19	3435544	3435545	rs72974768	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	NR	rs72974768-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
611	chr19	3438635	3438636	rs35533339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs35533339-?	NR	1E-48				NR [~ 8900000] (imputed)	N
611	chr19	3443404	3443405	rs4806937	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	19p13.3	NFIC	rs4806937-A	0.3735	2E-6		0.0326	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr19	3443404	3443405	rs4806937	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	19p13.3	NFIC	rs4806937-A	0.3789	2E-6		0.0407	[0.024-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
611	chr19	3446106	3446107	rs11085020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.3	Intergenic	rs11085020-T	0.6844	2E-10	(MTAG)	0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr19	3446106	3446107	rs11085020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs11085020-T	0.6837	4E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
611	chr19	3448841	3448842	rs4807472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19p13.3	Intergenic	rs4807472-T	0.3114	6E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr19	3456655	3456656	rs76909566	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	19p13.3	NFIC	rs76909566-A	0.09	5E-8		0.33	[0.21-0.45] mg/dl increase	Illumina [9281895] (imputed)	N
611	chr19	3456737	3456738	rs2240665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	19p13.3		rs2240665-C	0.725831	1E-8		0.0184084	[0.012-0.025] unit increase	Illumina [13479924] (imputed)	N
611	chr19	3457057	3457058	rs12980469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.3		rs12980469-A	NR	6E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
611	chr19	3458335	3458336	rs12610084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	NFIC	rs12610084-A	0.2017	1E-13		0.017	[0.012-0.022] unit increase	Affymetrix [18391927] (imputed)	N
611	chr19	3462044	3462045	rs8107139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	NFIC	rs8107139-C	0.404408	5E-14		0.017518308	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr19	3462044	3462045	rs8107139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8107139-C	0.488133	9E-17				Affymetrix, Illumina [24588908] (imputed)	N
611	chr19	3462044	3462045	rs8107139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs8107139-C	0.40536	4E-16		0.016231	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
611	chr19	3466221	3466221	rs11388112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	NFIC	rs11388112-CT	0.403952	7E-25		0.02450046	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr19	3468502	3468503	rs4807475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.3		rs4807475-?	NR	4E-8				NR [~ 8900000] (imputed)	N
611	chr19	3481212	3481213	rs10421472	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	C19orf77	rs10421472-T	0.185833	3E-9		0.016898908	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr19	3529151	3529152	rs537404743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	FZR1	rs537404743-T	0.28883	8E-15		0.019146053	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr19	3529151	3529152	rs537404743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs537404743-T	0.310425	3E-12				Affymetrix, Illumina [22063850] (imputed)	N
611	chr19	3529151	3529152	rs537404743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.3	NR	rs537404743-T	0.289412	1E-14		0.017565	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
611	chr19	3536815	3536816	rs8100223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs8100223-?	NR	1E-13				NR [~ 8900000] (imputed)	N
612	chr19	3540538	3540539	rs12984831	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	19p13.3	MFSD12	rs12984831-C	0.0164	4E-10		1.531159	NR	Affymetrix, Illumina [NR] (imputed)	N
612	chr19	3546263	3546264	rs34878396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.3		rs34878396-T	NR	8E-10		0.0629	[0.043-0.083] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
612	chr19	3546263	3546264	rs34878396	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.3	NR	rs34878396-T	NR	2E-9		0.0654	[0.044-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr19	3548230	3548231	rs2240751	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	19p13.3		rs2240751-G	0.34	2E-17				NR [7104359] (imputed)	N
612	chr19	3548230	3548231	rs2240751	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	19p13.3	MFSD12	rs2240751-G	0.336	2E-14		0.67	unit decrease	Illumina [366864] (imputed)	N
612	chr19	3548230	3548231	rs2240751	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	19p13.3	MFSD12	rs2240751-G	0.336	1E-8		0.67	unit decrease	Illumina [366864] (imputed)	N
612	chr19	3548230	3548231	rs2240751	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin pigmentation	6,236 Latin American individuals	NA	19p13.3	MFSD12	rs2240751-?	NR	2E-10				Illumina [8896142] (imputed)	N
612	chr19	3563981	3563982	rs10416746	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	19p13.3	MFSD12	rs10416746-A	NR	6E-9		0.294368	[0.2-0.39] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
612	chr19	3565598	3565599	rs112332856	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation (conditioned on rs1426654 and rs35397)	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	NA	19p13.3	MFSD12	rs112332856-C	NR	2E-8		0.197	[0.13-0.27] unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
612	chr19	3565598	3565599	rs112332856	31315583	Lona-Durazo F	2019-07-17	BMC Genet	Meta-analysis of GWA studies provides new insights on the genetic architecture of skin pigmentation in recently admixed populations.	Skin pigmentation	1,047 Hispanic/Latin American individuals, 684 Cape Verdian individuals, 373 African American individuals	East African ancestry individuals (See Crawford et. al, 2017)	19p13.3	NR	rs112332856-C	NR	9E-8		0.188956	unit increase	Affymetrix, Illumina [at least 292549] (imputed)	N
612	chr19	3575342	3575343	rs56208656	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	HMG20B	rs56208656-A	0.1103	3E-17		0.0284	[0.022-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
612	chr19	3575342	3575343	rs56208656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs56208656-?	NR	2E-12				NR [~ 8900000] (imputed)	N
612	chr19	3576318	3576319	rs201729575	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19p13.3	NR	rs201729575-?	NR	2E-19		0.34	[0.24-0.44] unit decrease	Illumina [at least 830937] (imputed)	N
612	chr19	3613471	3613472	rs12977510	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	C19orf29	rs12977510-A	0.046	6E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
613	chr19	3717773	3717774	rs28824495	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-177 sp002438685 abundance in stool	5,959 Finnish ancestry individuals	NA	19p13.3		rs28824495-T	0.0299182	2E-8		0.296168	[0.19-0.4] unit increase	Illumina [7980478] (imputed)	N
613	chr19	3728608	3728609	rs2067019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.3		rs2067019-A	NR	1E-9		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
613	chr19	3733650	3733651	rs2302304	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional vitamin use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	19p13.3	TJP3	rs2302304-?	NR	1E-6		3.12	[1.97-4.94]	NR [341191]	N
613	chr19	3748059	3748060	rs199978081	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	19p13.3		rs199978081-?	NR	5E-7		35.0169	[33.64-36.4]	NR [674885]	N
613	chr19	3750614	3750615	rs1046268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.3		rs1046268-C	NR	5E-11		0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
613	chr19	3750614	3750615	rs1046268	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19p13.3	TJP3	rs1046268-?	NR	4E-10		0.0014	[0.00081-0.00199] unit increase	Affymetrix [21347608] (imputed)	N
613	chr19	3750614	3750615	rs1046268	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19p13.3	TJP3	rs1046268-?	NR	8E-12		0.0028	[0.002-0.0036] unit increase	Affymetrix [21347608] (imputed)	N
613	chr19	3750614	3750615	rs1046268	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs1046268-T	0.454945	1E-8		0.00522719	[0.0036-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
613	chr19	3750614	3750615	rs1046268	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs1046268-T	0.454945	2E-6		0.00486264	[0.003-0.0067] unit increase	Affymetrix [16582965] (imputed)	N
613	chr19	3750621	3750622	rs1046271	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19p13.3	TJP3	rs1046271-A	0.45	8E-9		5.78	z-score increase	Affymetrix [4314223] (imputed)	N
613	chr19	3750621	3750622	rs1046271	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.3	TJP3	rs1046271-A	0.45	8E-10		6.15	z-score increase	Affymetrix [4312306] (imputed)	N
613	chr19	3752873	3752874	rs8102086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.3		rs8102086-G	NR	3E-12		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
613	chr19	3755265	3755266	rs764036	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19p13.3	APBA3	rs764036-A	0.54	6E-10		6.18	z-score increase	Affymetrix [4311822] (imputed)	N
613	chr19	3771585	3771586	rs76076446	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	19p13.3	RAX2	rs76076446-?	NR	3E-9		1.2961	[0.83-1.76] unit increase	Affymetrix [11100000] (imputed)	N
613	chr19	3797099	3797100	rs12104221	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.3	MATK	rs12104221-A	0.381	3E-8	(Total energy expenditure adj for weight )	0.05	[NR] kcal/d increase	Illumina [899892]	N
614	chr19	3813905	3813906	rs45465594	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19p13.3	ZFR2	rs45465594-C	0.0255	2E-7	(women)	0.04	[0.024-0.056] unit decrease	Illumina [246328]	N
614	chr19	3825839	3825840	rs13382169	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	19p13.3	ZFR2, MRPL54	rs13382169-A	0.04	6E-6	(African American)	0.52	0.3-0.75 unit decrease	Illumina [NR] (imputed)	N
614	chr19	3827798	3827799	rs150124735	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	19p13.3	ZFR2	rs150124735-G	NR	4E-6		0.02762	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
614	chr19	3830951	3830952	rs113987464	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ZFR2	rs113987464-?	NR	6E-9	(female)	0.569664	[NR] unit increase	Affymetrix [NR] (imputed)	N
614	chr19	3837994	3837995	rs72972977	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.3	NR	rs72972977-?	NR	5E-6		4.586	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
614	chr19	3902721	3902722	rs2060247	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	19p13.3	MIR1268A	rs2060247-C	0.1548	9E-6		0.2731	[0.15-0.39] unit increase	NR [NR] (imputed)	N
614	chr19	3927770	3927771	rs10412199	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	19p13.3	ATCAY	rs10412199-G	0.67	3E-6		1.1	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr19	3933313	3933314	rs2304192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19p13.3		rs2304192-?	NR	9E-10				NR [~ 8900000] (imputed)	N
615	chr19	3939248	3939249	rs143276018	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	19p13.3	NMRK2	rs143276018-C	0.018183	9E-6		0.101528	[0.057-0.146] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
615	chr19	3944239	3944240	rs10406174	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19p13.3	DAPK3, ITGB1BP3	rs10406174-A	0.11	7E-6		1.24	[1.12-1.36]	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr19	3944239	3944240	rs10406174	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19p13.3	DAPK3, ITGB1BP3	rs10406174-A	0.11	6E-6	(EA)	1.24	[1.13-1.36]	Affymetrix, Illumina [~ 2500000] (imputed)	N
615	chr19	3951566	3951567	rs55678693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.3	NR	rs55678693-T	NR	2E-9		0.0211	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr19	3951566	3951567	rs55678693	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.3	NR	rs55678693-T	NR	2E-9		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
615	chr19	3954626	3954627	rs112402118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19p13.3		rs112402118-A	NR	1E-11		0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
615	chr19	3970682	3970683	rs1654584	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	19p13.3	DAPK3	rs1654584-G	0.23	3E-7	(15-18 months)	0.091	[0.056-0.126] unit decrease	Illumina [2449665] (imputed)	N
615	chr19	4016004	4016005	rs7258309	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19p13.3	NA	rs7258309-T	0.7853	8E-16		0.0171	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
615	chr19	4020526	4020527	rs72976945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.3		rs72976945-?	NR	1E-9				NR [~ 8900000] (imputed)	N
615	chr19	4021577	4021578	rs78781371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.3		rs78781371-?	NR	5E-8				Affymetrix [NR] (imputed)	N
615	chr19	4028782	4028783	rs2289863	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.3	PIAS4	rs2289863-C	0.24926	6E-16		0.0179113	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
615	chr19	4029055	4029056	rs140448673	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.3	NR	rs140448673-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
615	chr19	4037321	4037322	rs75488612	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.3	PIAS4	rs75488612-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
615	chr19	4044423	4044424	rs59208569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	19p13.3	NR	rs59208569-C	0.829	2E-10		0.020476315	[0.014-0.027] unit increase	NR [~ 10000000] (imputed)	N
615	chr19	4044423	4044424	rs59208569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	19p13.3	NR	rs59208569-C	0.829	3E-11		0.019826	[0.014-0.026] unit increase	NR [9732723] (imputed)	N
615	chr19	4044578	4044579	rs7351050	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.3	ZBTB7A	rs7351050-?	NR	6E-10		0.010809	[0.0074-0.0142] unit decrease	Affymetrix [805426] (imputed)	N
615	chr19	4045517	4045518	rs13437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.3		rs13437-C	NR	1E-11		0.0395	[0.028-0.051] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
615	chr19	4048560	4048561	rs67868323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19p13.3		rs67868323-T	NR	4E-13		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
615	chr19	4050423	4050424	rs72976986	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.3	ZBTB7A	rs72976986-G	0.80983	4E-15		0.0138512	[0.01-0.017] unit increase	Affymetrix [12370749]	N
615	chr19	4050423	4050424	rs72976986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.3		rs72976986-?	NR	5E-19				NR [~ 8900000] (imputed)	N
615	chr19	4055714	4055715	rs34809898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19p13.3		rs34809898-A	NR	3E-16		0.0224	[0.017-0.028] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
615	chr19	4056206	4056207	rs67602344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs67602344-A	NR	1E-10		0.0202	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr19	4056206	4056207	rs67602344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.3	NR	rs67602344-A	NR	2E-10		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr19	4056206	4056207	rs67602344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.3	NR	rs67602344-A	NR	1E-12		0.0224	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr19	4056206	4056207	rs67602344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19p13.3	NR	rs67602344-A	NR	8E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
615	chr19	4056365	4056366	rs66534382	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	19p13.3		rs66534382-?	NR	2E-10				NR [7857346] (imputed)	N
615	chr19	4056365	4056366	rs66534382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs66534382-A	0.194506	6E-78				Affymetrix, Illumina [24332387] (imputed)	N
615	chr19	4056365	4056366	rs66534382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.3	NR	rs66534382-A	0.191918	6E-79		0.046367	[0.042-0.051] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
615	chr19	4056365	4056366	rs66534382	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.3	ZBTB7A	rs66534382-?	NR	2E-10		0.011182	[0.0078-0.0146] unit decrease	Affymetrix [805426] (imputed)	N
615	chr19	4061543	4061544	rs10415135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.3	ZBTB7A	rs10415135-T	0.1907	6E-29		0.05085484	[0.042-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
615	chr19	4061543	4061544	rs10415135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.3	ZBTB7A	rs10415135-T	0.1907	5E-45		0.06361184	[0.055-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
615	chr19	4061543	4061544	rs10415135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.3	ZBTB7A	rs10415135-T	0.1906	2E-39		0.05949773	[0.051-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr19	4064056	4064057	rs56356382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	ZBTB7A	rs56356382-C	0.191914	4E-65		0.047840018	[0.042-0.053] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4064056	4064057	rs56356382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	ZBTB7A	rs56356382-C	0.191899	1E-77		0.05293354	[0.047-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr19	4064056	4064057	rs56356382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	ZBTB7A	rs56356382-C	0.19183	6E-43		0.039343543	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr19	4064056	4064057	rs56356382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	ZBTB7A	rs56356382-C	0.191902	1E-98		0.059648	[0.055-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr19	4064056	4064057	rs56356382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	ZBTB7A	rs56356382-C	0.191893	5E-84		0.05443745	[0.049-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr19	4064056	4064057	rs56356382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs56356382-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
616	chr19	4064056	4064057	rs56356382	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19p13.3	NR	rs56356382-C	0.192	7E-12		0.021675529	[0.015-0.028] unit decrease	Affymetrix [10549349] (imputed)	N
616	chr19	4064056	4064057	rs56356382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs56356382-?	NR	3E-62				NR [~ 8900000] (imputed)	N
616	chr19	4064056	4064057	rs56356382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs56356382-?	NR	2E-87				NR [~ 8900000] (imputed)	N
616	chr19	4064056	4064057	rs56356382	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	ZBTB7A	rs56356382-T	0.7853	1E-10		0.1561	[0.11-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
616	chr19	4064056	4064057	rs56356382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.3	NA	rs56356382-T	0.8054	3E-19		0.0217	[0.017-0.026] unit increase	NR [~ 27400000] (imputed)	N
616	chr19	4067313	4067314	rs188955288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19p13.3		rs188955288-T	NR	2E-15		0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
616	chr19	4069118	4069119	rs7254272	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	19p13.3	ZBTB7A, PIAS4, LRF	rs7254272-A	0.18	5E-8		1.17	[1.10-1.23]	Affymetrix, Illumina [> 10000000] (imputed)	N
616	chr19	4070162	4070163	rs59394312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.3		rs59394312-G	NR	6E-43		0.0371	[0.032-0.042] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
616	chr19	4070541	4070542	rs72977000	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.3	NR	rs72977000-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr19	4074696	4074697	rs11880023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.3		rs11880023-T	0.221092	3E-11		0.01774128	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4079366	4079367	rs111929083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3		rs111929083-T	0.014178	9E-17		0.07974124	[0.061-0.099] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4079366	4079367	rs111929083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3		rs111929083-T	0.014195	1E-20		0.09009265	[0.071-0.109] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4080243	4080244	rs183843320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3		rs183843320-G	0.013771	6E-18		0.0879168	[0.07-0.105] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4080243	4080244	rs183843320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3		rs183843320-G	0.013768	3E-10		0.06058555	[0.042-0.079] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4080517	4080518	rs147068659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19p13.3		rs147068659-?	NR	1E-11				NR [~ 8900000] (imputed)	N
616	chr19	4081637	4081638	rs12459969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs12459969-C	0.760044	4E-14				Affymetrix, Illumina [19872809] (imputed)	N
616	chr19	4082798	4082799	rs350823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.3	NR	rs350823-T	0.741507	1E-15		0.018362	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
616	chr19	4083915	4083916	rs67820526	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	MAP2K2	rs67820526-G	0.824556	2E-9		0.0147105	[0.0099-0.0195] unit decrease	NR [13737936] (imputed)	N
616	chr19	4083915	4083916	rs67820526	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs67820526-?	NR	2E-12				NR [~ 8900000] (imputed)	N
616	chr19	4083915	4083916	rs67820526	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.3		rs67820526-?	NR	8E-13		0.0195704	[0.014-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
616	chr19	4085895	4085896	rs2656523	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19p13.3	MAP2K2	rs2656523-C	0.7737	1E-12		0.1519	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
616	chr19	4086806	4086807	rs350818	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19p13.3	NA	rs350818-A	0.2324	4E-16		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
616	chr19	4089810	4089811	rs60505738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.3	NR	rs60505738-T	0.090062	2E-11		0.022954	[0.016-0.03] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
616	chr19	4089810	4089811	rs60505738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs60505738-T	0.08997	1E-13		0.025978	[0.019-0.033] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
616	chr19	4089979	4089980	rs239996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.3	MAP2K2	rs239996-A	0.675175	8E-14		0.01781403	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr19	4089979	4089980	rs239996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs239996-?	NR	3E-8				NR [~ 8900000] (imputed)	N
616	chr19	4090421	4090422	rs6630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	MAP2K2	rs6630-T	0.088423	7E-9		0.022797374	[0.015-0.031] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4090421	4090422	rs6630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	MAP2K2	rs6630-T	0.088453	4E-10		0.024628332	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
616	chr19	4090421	4090422	rs6630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs6630-T	0.0962275	5E-13				Affymetrix, Illumina [23472807] (imputed)	N
616	chr19	4090421	4090422	rs6630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs6630-?	NR	3E-11				NR [~ 8900000] (imputed)	N
616	chr19	4098775	4098776	rs350912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs350912-?	NR	2E-23				NR [~ 8900000] (imputed)	N
616	chr19	4101061	4101062	rs10250	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	19p13.3		rs10250-?	NR	5E-6		4.58	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr19	4101061	4101062	rs10250	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	19p13.3		rs10250-?	NR	2E-6		0.05	[0.028-0.072] unit increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr19	4101061	4101062	rs10250	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	19p13.3		rs10250-?	NR	5E-6		4.56	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr19	4101061	4101062	rs10250	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.3	NR	rs10250-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
616	chr19	4102919	4102920	rs350908	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs350908-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
616	chr19	4105558	4105559	rs350906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.3	NR	rs350906-?	NR	5E-7		0.0417	[0.025-0.058] unit increase	Illumina [at least 560000] (imputed)	N
616	chr19	4118480	4118481	rs350889	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	19p13.3	MAP2K2	rs350889-G	0.757207088071938	7E-12		0.011818801	unit decrease	NR [9276018] (imputed)	N
616	chr19	4132099	4132100	rs28827913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19p13.3		rs28827913-?	NR	4E-8				NR [~ 8900000] (imputed)	N
616	chr19	4133552	4133553	rs8103978	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	19p13.3	NR	rs8103978-C	0.73	1E-30		2.1007	[1.74-2.46] unit decrease	Affymetrix, Illumina [12989038] (imputed)	N
616	chr19	4139439	4139440	rs7260465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19p13.3		rs7260465-T	NR	6E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
616	chr19	4139439	4139440	rs7260465	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.3	CREB3L3	rs7260465-C	0.7384	2E-12		0.0160542	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
616	chr19	4139848	4139849	rs164632	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19p13.3	EBI3	rs164632-?	NR	2E-8		0.0166	[0.011-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
616	chr19	4140907	4140908	rs7257786	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	19p13.3	NR	rs7257786-?	NR	1E-17				Affymetrix, Illumina [6210360] (imputed)	N
616	chr19	4142366	4142367	rs7250344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.3	NR	rs7250344-T	NR	3E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix [9000000] (imputed)	N
616	chr19	4149565	4149566	rs352126	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.3	CREB3L3	rs352126-C	0.665623	2E-9		0.0127128	[0.0085-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
616	chr19	4149565	4149566	rs352126	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.3	NR	rs352126-C	0.664743	4E-8		0.0116444	[0.0075-0.0158] unit decrease	NR [NR]	N
616	chr19	4153565	4153566	rs73538174	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	19p13.3	NR	rs73538174-A	0.8201	6E-69		3.2457	[2.88-3.61] unit decrease	Affymetrix, Illumina [12989038] (imputed)	N
616	chr19	4159746	4159747	rs140312652	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	19p13.3		rs140312652-?	NR	2E-9		0.147806	[0.1-0.2] unit decrease	NR [9800000] (imputed)	N
616	chr19	4159872	4159873	rs2240702	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.3	NR	rs2240702-A	0.8862	8E-8		0.0153	[0.0096-0.021] unit decrease	NR [~ 27400000] (imputed)	N
616	chr19	4168364	4168364	rs780374391	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	19p13.3		rs780374391-?	NR	2E-8		0.595401	[0.37-0.82] unit increase	NR [9800000] (imputed)	N
616	chr19	4183154	4183155	rs3760907	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19p13.3	NR	rs3760907-G	NR	3E-9		0.0228	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
617	chr19	4210924	4210925	rs141663665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs141663665-?	NR	8E-11				NR [~ 8900000] (imputed)	N
617	chr19	4217575	4217576	rs150106684	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs150106684-C	0.046	2E-14		0.2634	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
617	chr19	4223372	4223373	rs8101278	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	19p13.3		rs8101278-C	NR	5E-7		1.2531328	[1.15-1.37]	Affymetrix [7846216] (imputed)	N
617	chr19	4226852	4226853	rs56870864	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs56870864-T	0.86	2E-18		0.1209	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
617	chr19	4231070	4231071	rs112180438	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs112180438-T	0.0122	6E-10	(PRDX2)	1.266	NR unit increase	Illumina [1671387] (imputed)	N
617	chr19	4231070	4231071	rs112180438	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs112180438-T	0.0122	5E-12	(TTN)	1.417	NR unit increase	Illumina [1671387] (imputed)	N
617	chr19	4231070	4231071	rs112180438	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs112180438-T	0.0122	1E-8	(HBG1)	13.97	NR unit increase	Illumina [1671387] (imputed)	N
617	chr19	4234855	4234856	rs9807908	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs9807908-A	0.058	2E-171		0.5867	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
617	chr19	4237066	4237067	rs4905	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs4905-A	0.7	6E-1169		0.6122	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
617	chr19	4237066	4237067	rs4905	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19p13.3	EBI3	rs4905-G	0.3	5E-119		0.49	unit decrease	Illumina [5270624] (imputed)	N
617	chr19	4254751	4254752	rs10409421	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	EBI3	rs10409421-A	0.71625	1E-458	(EBI3, 10851_77_3)	1.0493145	[1.01-1.09] unit increase	Illumina [> 1000000] (imputed)	N
617	chr19	4286309	4286310	rs186793887	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 39)	19,670 European ancestry individuals	NA	19p13.3		rs186793887-?	NR	5E-9				NR [9705931] (imputed)	N
618	chr19	4338172	4338173	rs57631352	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19p13.3		rs57631352-?	NR	2E-8		0.0125522	[0.0082-0.0169] unit decrease	NR [6912294] (imputed)	N
618	chr19	4338172	4338173	rs57631352	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19p13.3	NR	rs57631352-G	0.297255	1E-9		0.012866	[0.0087-0.017] unit decrease	Affymetrix [16668957] (imputed)	N
618	chr19	4338172	4338173	rs57631352	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	19p13.3	STAP2	rs57631352-A	0.7029	2E-6		0.0079	[0.0046-0.0112] unit increase	Affymetrix [~ 7740000] (imputed)	N
618	chr19	4344618	4344619	rs28736724	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs28736724-T	0.08362	2E-9	(DPP7)	0.06762	NR unit increase	Illumina [1671387] (imputed)	N
618	chr19	4351651	4351652	rs11666770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs11666770-?	NR	8E-8				NR [~ 8900000] (imputed)	N
618	chr19	4351651	4351652	rs11666770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs11666770-?	NR	5E-78				NR [~ 8900000] (imputed)	N
618	chr19	4355870	4355871	rs10420217	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19p13.3	MPND	rs10420217-C	0.283281	2E-8		1.0384583	1.02485901559187-1.05223806465017]	NR [9572556] (imputed)	N
618	chr19	4360542	4360543	rs7769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.3	NR	rs7769-A	0.248845	4E-10		0.013918	[0.0096-0.0183] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
618	chr19	4363564	4363566	rs139561776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	SH3GL1	rs139561776-T	0.265956	2E-10		0.017090727	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr19	4366218	4366219	rs732716	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	SH3GL1	rs732716-A	0.7038	6E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
618	chr19	4366218	4366219	rs732716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	SH3GL1	rs732716-G	0.296992	8E-17		0.020634316	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr19	4366218	4366219	rs732716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.3	NR	rs732716-G	0.292137	2E-278		0.072667	[0.069-0.077] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
618	chr19	4366218	4366219	rs732716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs732716-G	0.250321	5E-22				Affymetrix, Illumina [24558453] (imputed)	N
618	chr19	4366218	4366219	rs732716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19p13.3	NR	rs732716-G	0.291998	3E-25		0.021588	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
618	chr19	4366218	4366219	rs732716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs732716-?	NR	2E-8				NR [~ 8900000] (imputed)	N
618	chr19	4366218	4366219	rs732716	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	19p13.3	NR	rs732716-?	NR	3E-9				NR [2500000] (imputed)	N
618	chr19	4386910	4386911	rs75177132	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19p13.3	NR	rs75177132-T	0.0479	1E-11		0.0193395	[0.014-0.025] unit decrease	NR [9732723] (imputed)	N
618	chr19	4386910	4386911	rs75177132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs75177132-T	0.0426	1E-8	(MTAG)	0.0237	[0.015-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
618	chr19	4386910	4386911	rs75177132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.3		rs75177132-T	0.0476	1E-16		0.0298	[0.023-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
618	chr19	4386910	4386911	rs75177132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.3	Intergenic	rs75177132-T	0.0476	6E-18	(MTAG)	0.0284	[0.022-0.035] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
618	chr19	4403799	4403800	rs243340	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.3	NR	rs243340-T	0.4536	1E-10				NR [9056863] (imputed)	N
618	chr19	4423418	4423419	rs11668886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19p13.3		rs11668886-T	NR	3E-15		0.0178	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
618	chr19	4426164	4426165	rs549220260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	CHAF1A	rs549220260-C	0.714596	2E-102		0.05334919	[0.048-0.058] unit increase	Affymetrix [93095623] (imputed)	N
618	chr19	4426164	4426165	rs549220260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	CHAF1A	rs549220260-C	0.714625	4E-14		0.019032001	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
618	chr19	4426164	4426165	rs549220260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.3	CHAF1A	rs549220260-C	0.7135	2E-72		0.0707362	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr19	4426164	4426165	rs549220260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.3	CHAF1A	rs549220260-C	0.7135	1E-63		0.06640468	[0.059-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr19	4429006	4429007	rs62130978	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.3	CHAF1A	rs62130978-T	NR	4E-14		0.0336982	[0.025-0.043] unit increase	Affymetrix [16832071] (imputed)	N
618	chr19	4429006	4429007	rs62130978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.3	CHAF1A	rs62130978-T	0.2544	2E-22		0.03943447	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
618	chr19	4434502	4434503	rs12459919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	CHAF1A	rs12459919-T	0.253268	2E-30		0.03104053	[0.026-0.036] unit increase	Affymetrix [93095623] (imputed)	N
618	chr19	4434502	4434503	rs12459919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs12459919-C	0.753943	7E-58				Affymetrix, Illumina [22063850] (imputed)	N
618	chr19	4434502	4434503	rs12459919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.3	NR	rs12459919-C	0.7482	5E-61		0.035893	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
618	chr19	4434502	4434503	rs12459919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs12459919-?	NR	1E-50				NR [~ 8900000] (imputed)	N
618	chr19	4437449	4437450	rs11666856	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	CHAF1A	rs11666856-G	0.275	2E-145		0.0735809	[0.069-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr19	4442335	4442336	rs9352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.3		rs9352-C	0.46	6E-21		9.39	z score increase	Affymetrix [9061022] (imputed)	N
618	chr19	4442528	4442529	rs243382	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.3		rs243382-T	0.44	1E-10		6.42	z score increase	Affymetrix [9061022] (imputed)	N
618	chr19	4442528	4442529	rs243382	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.3		rs243382-T	0.44	5E-20		9.15	z score increase	Affymetrix [9061022] (imputed)	N
618	chr19	4442528	4442529	rs243382	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.3	NR	rs243382-T	0.4374	1E-17				NR [9056863] (imputed)	N
618	chr19	4444442	4444443	rs62130981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.3		rs62130981-?	NR	1E-7				NR [~ 8900000] (imputed)	N
618	chr19	4444741	4444742	rs78869060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	CHAF1A	rs78869060-G	0.274971	6E-165		0.0681711	[0.063-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr19	4444741	4444742	rs78869060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	CHAF1A	rs78869060-G	0.274874	6E-106		0.05594169	[0.051-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
618	chr19	4449286	4449287	rs760369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	UBXN6	rs760369-C	0.284289	1E-10		0.016013952	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
618	chr19	4455861	4455862	rs12459922	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	19p13.3		rs12459922-?	0.2352	2E-9		0.278	[0.19-0.37] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr19	4455861	4455862	rs12459922	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	19p13.3		rs12459922-?	0.2511	7E-6		0.3303	[0.19-0.47] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr19	4455861	4455862	rs12459922	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	19p13.3		rs12459922-?	0.26	2E-6		0.2749	[0.16-0.39] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr19	4455861	4455862	rs12459922	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19p13.3		rs12459922-?	0.2352	6E-8		0.096	[0.061-0.131] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
618	chr19	4455861	4455862	rs12459922	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	19p13.3		rs12459922-?	0.26	2E-6		0.1095	[0.065-0.154] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4458530	4458531	rs113832155	29246731	de Toro-Martin J	2017-11-02	J Clin Lipidol	A common variant in ARHGEF10 alters delta-6 desaturase activity and influence susceptibility to hypertriglyceridemia.	Delta-5 desaturase activity response to n3-polyunsaturated fat supplement	81 extreme responder individuals, 60 non-responder individuals	NA	19p13.3	UBXN6	rs113832155-G	0.01	6E-9		3.061	[2.10-4.02] unit increase	Illumina [2668805]	N
619	chr19	4466465	4466466	rs12971909	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.3	UBXN6	rs12971909-A	NR	6E-9		1.0725011	NR	Affymetrix, Illumina [8278136] (imputed)	N
619	chr19	4474724	4474725	rs76608582	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	19p13.3		rs76608582-C	0.953	3E-10		0.031	[0.021-0.041] unit increase	Affymetrix [up to 90000000] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	19p13.3	HDGFRP2	rs76608582-A	0.0482	1E-8		0.0304	[0.02-0.041] unit decrease	Illumina [~ 250000] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	19p13.3	HDGFRP2	rs76608582-A	0.0475	6E-11		0.033407107	[0.023-0.043] unit decrease	Affymetrix [11514654] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19p13.3	NR	rs76608582-A	0.0489	5E-9		0.034549292	[0.023-0.046] unit decrease	NR [~ 10000000] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	19p13.3	HDGFRP2	rs76608582-A	0.029	9E-9		0.036	[0.022-0.05] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	19p13.3		rs76608582-?	NR	2E-12				NR [~ 8900000] (imputed)	N
619	chr19	4474724	4474725	rs76608582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19p13.3		rs76608582-?	NR	1E-9				NR [~ 8900000] (imputed)	N
619	chr19	4474724	4474725	rs76608582	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19p13.3	NR	rs76608582-A	NR	3E-8		5.57	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
619	chr19	4474724	4474725	rs76608582	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.3	NR	rs76608582-?	NR	7E-7		4.957	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
619	chr19	4483484	4483485	rs12984070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19p13.3		rs12984070-G	NR	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
619	chr19	4484914	4484915	rs11672343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.3	HDGFRP2	rs11672343-A	0.495053	2E-11		0.015165403	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4484914	4484915	rs11672343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	HDGFRP2	rs11672343-A	0.495028	6E-13		0.016242864	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4484914	4484915	rs11672343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs11672343-A	0.434626	3E-12				Affymetrix, Illumina [24588908] (imputed)	N
619	chr19	4484914	4484915	rs11672343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs11672343-A	0.494796	8E-14		0.01513	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
619	chr19	4485045	4485046	rs11669479	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	19p13.3	HDGFRP2	rs11669479-?	NR	1E-15		0.0379	[0.029-0.047] unit increase novel	Illumina [6108953] (imputed)	N
619	chr19	4485045	4485046	rs11669479	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	19p13.3	HDGFRP2	rs11669479-?	NR	1E-16		0.03927	[0.03-0.049] unit increase novel	Illumina [6108953] (imputed)	N
619	chr19	4492938	4492939	rs111174163	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	19p13.3	NR	rs111174163-T	0.888589	9E-10		0.0190674	[0.013-0.025] unit decrease	Affymetrix [15000001]	N
619	chr19	4493707	4493708	rs892161	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.3	HDGFRP2	rs892161-A	0.3778	5E-8		0.0124	[0.0079-0.0169] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
619	chr19	4496866	4496866	rs71340908	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.3	NR	rs71340908-C	0.449589	7E-13		0.00588994	[0.0041-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
619	chr19	4496866	4496866	rs71340908	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.3	NR	rs71340908-C	0.449589	1E-7		0.00477534	[0.0028-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
619	chr19	4498153	4498154	rs919798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19p13.3		rs919798-A	NR	3E-31		0.0194	[0.016-0.023] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
619	chr19	4498153	4498154	rs919798	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	HDGFRP2	rs919798-G	NR	5E-8		0.015629	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
619	chr19	4498153	4498154	rs919798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.3	HDGFRP2	rs919798-A	0.562361	9E-31		0.02623118	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4498153	4498154	rs919798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.3	HDGFRP2	rs919798-A	0.562312	4E-9		0.01350444	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell traits (multivariate analysis)	29,513 European ancestry individuals	NA	19p13.3	NR	rs919797-?	0.46	1E-8				Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	19p13.3		rs919797-?	0.5146	6E-9		0.2325	[0.15-0.31] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	19p13.3		rs919797-?	0.4626	4E-7		0.2847	[0.17-0.39] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	19p13.3		rs919797-?	0.4626	5E-6		0.0372	[0.021-0.053] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	19p13.3		rs919797-?	0.5146	4E-6		0.0275	[0.016-0.039] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19p13.3		rs919797-?	0.5146	2E-11		0.1034	[0.073-0.134] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498156	4498157	rs919797	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	19p13.3		rs919797-?	0.4626	1E-9		0.1342	[0.091-0.178] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
619	chr19	4498244	4498245	rs2288926	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.3	NR	rs2288926-A	0.310853	9E-9		0.00688754	[0.0043-0.0095] unit increase	Affymetrix [16585854] (imputed)	N
619	chr19	4499849	4499850	rs35632432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.3	HDGFRP2	rs35632432-A	NR	7E-10		0.0190167	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
619	chr19	4499849	4499850	rs35632432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.3	HDGFRP2	rs35632432-A	NR	2E-10		0.0195065	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
619	chr19	4499849	4499850	rs35632432	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.3	NR	rs35632432-A	0.3101	7E-8		0.0116	[0.0073-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
619	chr19	4502200	4502201	rs8887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.3		rs8887-C	NR	1E-171		0.0573	[0.053-0.061] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
619	chr19	4502200	4502201	rs8887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19p13.3		rs8887-C	0.305371	4E-31		0.0452442	[0.038-0.053] unit increase	Illumina [13476266] (imputed)	N
619	chr19	4502200	4502201	rs8887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.3		rs8887-C	NR	2E-37		0.0263	[0.022-0.03] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
619	chr19	4502200	4502201	rs8887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.3		rs8887-C	NR	2E-220		0.0651	[0.061-0.069] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
619	chr19	4502200	4502201	rs8887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19p13.3		rs8887-C	0.305064	7E-35		0.0485558	[0.041-0.056] unit increase	Illumina [13476299] (imputed)	N
619	chr19	4502200	4502201	rs8887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.3	HDGFRP2	rs8887-T	NR	5E-10		0.0179786	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
619	chr19	4502200	4502201	rs8887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.3	HDGFRP2	rs8887-T	NR	6E-10		0.0178735	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
619	chr19	4502200	4502201	rs8887	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.3		rs8887-C	NR	2E-13		0.27	[0.19-0.35] unit increase	Illumina [97506867]	N
619	chr19	4502200	4502201	rs8887	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.3		rs8887-C	NR	2E-12		0.1	[0.08-0.12] unit increase	Illumina [94681438]	N
619	chr19	4502200	4502201	rs8887	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	PLIN4	rs8887-T	0.4284	8E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix [18391927] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571125	1E-16		0.01886904	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571148	2E-142		0.0684497	[0.064-0.073] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-T	0.571147	4E-87		0.0436904	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571134	1E-220		0.07188543	[0.067-0.076] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571109	2E-160		0.061340146	[0.057-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571212	1E-12		0.01603828	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.571202	4E-18		0.019596599	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8887-C	0.514638	1E-278				Affymetrix, Illumina [24246363] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	19p13.3	NR	rs8887-T	0.693419	2E-21		0.041871	[0.033-0.05] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8887-C	0.512733	8E-98				Affymetrix, Illumina [21126107] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.3	NR	rs8887-C	0.57005	1E-93		0.042024	[0.038-0.046] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8887-C	0.514604	5E-376				Affymetrix, Illumina [20825802] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.3	NR	rs8887-C	0.570091	4E-350		0.078671	[0.075-0.083] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	19p13.3	NR	rs8887-T	0.693413	2E-27		0.048022	[0.039-0.057] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8887-C	0.507634	3E-55				Affymetrix, Illumina [24653286] (imputed)	N
619	chr19	4502200	4502201	rs8887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.3	NR	rs8887-C	0.569438	6E-52		0.02991	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
619	chr19	4502200	4502201	rs8887	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19p13.3	HDGFRP2, PLIN4	rs8887-T		9E-38		0.028	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
619	chr19	4502200	4502201	rs8887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs8887-?	NR	3E-30				NR [~ 8900000] (imputed)	N
619	chr19	4502200	4502201	rs8887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs8887-?	NR	5E-303				NR [~ 8900000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5712	3E-81		0.0691261	[0.062-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5711	7E-34		0.04312099	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5712	4E-111		0.08133153	[0.074-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5712	2E-68		0.06364281	[0.057-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5712	1E-12		0.02616673	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5713	8E-17		0.03064393	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502200	4502201	rs8887	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19p13.3	HDGFRP2	rs8887-C	0.5712	3E-13		0.02651948	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4502281	4502282	rs13041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.3		rs13041-T	NR	7E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
619	chr19	4502281	4502282	rs13041	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.3	NR	rs13041-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
619	chr19	4502281	4502282	rs13041	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.3		rs13041-?	NR	2E-8				NR [~ 8900000] (imputed)	N
619	chr19	4505355	4505356	rs11879706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	PLIN4	rs11879706-T	0.516312	2E-19		0.02051541	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
619	chr19	4505444	4505445	rs16989695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.3	NR	rs16989695-A	NR	5E-9		0.0139	[0.0092-0.0186] unit decrease	Affymetrix [9000000] (imputed)	N
619	chr19	4505444	4505445	rs16989695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.3	NR	rs16989695-A	NR	2E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
619	chr19	4505444	4505445	rs16989695	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.3	PLIN4	rs16989695-A	0.5178	8E-14		0.02652874	[0.02-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
619	chr19	4540428	4540429	rs4806985	33889958	Gurung RL	2021-04-23	J Clin Endocrinol Metab	Association of genetic variants for plasma LRG1 with rapid decline in kidney function in patients with type 2 diabetes.	Leucine-rich alpha-2-glycoprotein 1 levels in type 2 diabetes	983 Chinese ancestry individuals, 420 Malay ancestry individuals, 478 Indian ancestry individuals	1,813 Chinese ancestry individuals			rs4806985-G	0.685	7E-16		0.189	[0.14-0.23] unit increase	Illumina [705416]	N
619	chr19	4540702	4540703	rs34182375	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	LRG1 plasma levels	400 French ancestry individuals	NA	19p13.3		rs34182375-C	NR	3E-12		0.144	[0.1-0.18] ug/mL decrease	Illumina [5201092] (imputed)	N
619	chr19	4564780	4564781	rs10426669	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	19p13.3	NR	rs10426669-G	NR	6E-6		0.7649	NR unit increase	Illumina [4533042] (imputed)	N
620	chr19	4605238	4605239	rs10420817	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.3	SEMA6B	rs10420817-?	NR	7E-6	(tyrosine)	0.22047739	[0.12-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
620	chr19	4641414	4641415	rs35925872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs35925872-?	NR	2E-8				NR [~ 8900000] (imputed)	N
620	chr19	4717671	4717672	rs12610495	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	19p13.3	DPP9	rs12610495-G	0.305	3E-12		1.31	[1.22-1.42]	Affymetrix, Illumina [10790934] (imputed)	N
620	chr19	4717671	4717672	rs12610495	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	19p13.3	DPP9	rs12610495-G	0.29	2E-12		1.29	[1.18-1.41]	Illumina [439828]	N
621	chr19	4719442	4719443	rs2109069	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	19p13.3		rs2109069-A	0.315	4E-9		1.0490416	[1.0324357703246052-1.065914551006182]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
621	chr19	4719442	4719443	rs2109069	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	19p13.3		rs2109069-A	0.3118	3E-17		1.1544453	[1.1166480216504269-1.1935220479717292]	Affymetrix, Illumina [NR] (imputed)	N
621	chr19	4719442	4719443	rs2109069	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	19p13.3		rs2109069-A	0.3158	1E-21		1.2595191	[1.2014454336815512-1.3203998930516965]	Illumina [NR] (imputed)	N
621	chr19	4719442	4719443	rs2109069	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	19p13.3		rs2109069-A	NR	7E-13		1.2	[1.19-1.31]	Illumina [NR] (imputed)	N
621	chr19	4742464	4742465	rs7508325	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	intergenic	rs7508325-A	0.1839	2E-13		0.0174	[0.013-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
621	chr19	4768916	4768917	rs879564	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	19p13.3	NR	rs879564-A		1E-7		1.15	[1.09-1.22]	Affymetrix, Illumina [up to 3437411] (imputed)	N
621	chr19	4772342	4772343	rs3760954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs3760954-?	NR	5E-14				NR [~ 8900000] (imputed)	N
621	chr19	4780404	4780405	rs10408295	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.3	Intergenic	rs10408295-G	NR	9E-6	(men)	0.0230683	[0.013-0.033] unit decrease	Illumina [13520550] (imputed)	N
621	chr19	4781102	4781103	rs11085094	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.3	MIR7-3HG, FEM1A	rs11085094-?	NR	6E-11		0.03927575	[0.028-0.051] unit decrease	Illumina [27896057] (imputed)	N
621	chr19	4814647	4814648	rs10411970	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19p13.3		rs10411970-A	0.524296	2E-28		1.0479665	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
621	chr19	4830627	4830628	rs6510827	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	19p13.3		rs6510827-?	NR	1E-9		0.934578	[0.91-0.96]	NR [685523]	N
621	chr19	4830627	4830628	rs6510827	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	19p13.3	TICAM1	rs6510827-T	0.41	9E-8		1.19	[NR]	Illumina [495821]	N
621	chr19	4831877	4831878	rs4807000	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	19p13.3	TICAM1	rs4807000-A	0.389576	1E-8		0.06382791	[0.042-0.086] unit decrease	Affymetrix [7260263] (imputed)	N
621	chr19	4831877	4831878	rs4807000	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	19p13.3	TICAM1	rs4807000-A	0.3959	2E-14		1.205	[1.15-1.26]	Illumina [8966411] (imputed)	N
621	chr19	4832361	4832362	rs7254729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	19p13.3		rs7254729-C	NR	7E-20		0.0802	[0.063-0.097] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
621	chr19	4832361	4832362	rs7254729	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	19p13.3	TICAM1	rs7254729-T	0.406483	2E-17		0.07874763	[0.061-0.097] unit increase	Affymetrix [7288503] (imputed)	N
621	chr19	4837486	4837487	rs10425559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	19p13.3		rs10425559-?	NR	3E-14				NR [~ 8900000] (imputed)	N
621	chr19	4837486	4837487	rs10425559	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	19p13.3	PLIN3	rs10425559-G	0.6	3E-8		1.08	[NR]	Illumina [at least 560000] (imputed)	N
621	chr19	4837556	4837557	rs10424978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	19p13.3		rs10424978-A	NR	1E-9		0.0598	[0.041-0.079] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
621	chr19	4837556	4837557	rs10424978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19p13.3		rs10424978-A	NR	3E-14		0.0775	[0.058-0.097] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
621	chr19	4837556	4837557	rs10424978	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	19p13.3	CTC-518P12.6	rs10424978-A	0.60079	3E-12		1.0638298	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
621	chr19	4837556	4837557	rs10424978	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	19p13.3	CTC-518P12.6	rs10424978-A	0.608962	2E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 9061544] (imputed)	N
621	chr19	4837556	4837557	rs10424978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19p13.3		rs10424978-?	NR	3E-23				NR [~ 8900000] (imputed)	N
621	chr19	4840798	4840799	rs72981884	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	19p13.3	PLIN3	rs72981884-G	0.969962745	9E-7		1.3132664	[1.18-1.46]	Illumina [10439017] (imputed)	N
621	chr19	4841150	4841151	rs2779180	27723809	Matsunami K	2016-10-10	PLoS One	Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.	Depression in response to interferon-based therapy in chronic hepatitis C	45 Japanese ancestry cases, 179 Japanese ancestry controls	40 Japanese ancestry cases, 120 Japanese ancestry controls	19p13.3	M6PRBP1	rs2779180-?	NR	1E-6		2.564103	NR	Affymetrix [at least 551176] (imputed)	N
621	chr19	4843289	4843290	rs11880910	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	19p13.3	PLIN3	rs11880910-G	NR	8E-6	(adjusted for subcutaneous fat)	0.243	[0.14-0.35] unit decrease	Illumina [8511049] (imputed)	N
622	chr19	4883740	4883741	rs35967093	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.3	NR	rs35967093-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
622	chr19	4892086	4892087	rs2656937	32671597	Streicher SA	2020-07-15	Hum Genet	A pooled genome-wide association study identifies pancreatic cancer susceptibility loci on chromosome 19p12 and 19p13.3 in the full-Jewish population.	Pancreatic cancer	604 Jewish cases, 2,332 Jewish controls	NA	19p13.3	ARRDC5	rs2656937-C	0.34	1E-7		1.53	[1.31-1.78]	Affymetrix, Illumina [1286673] (imputed)	N
622	chr19	4902949	4902950	rs2602717	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.3	NR	rs2602717-T	NR	1E-9		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
622	chr19	4910020	4910021	rs2602713	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.3		rs2602713-C	0.4	4E-8		5.47	z score increase	Affymetrix [9061022] (imputed)	N
622	chr19	4910020	4910021	rs2602713	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.3	UHRF1	rs2602713-A	0.5603	2E-29		0.0217	[0.018-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
622	chr19	4915446	4915447	rs2779165	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	19p13.3	NR	rs2779165-C	0.18	1E-10		0.027	[0.019-0.035] z score decrease	Affymetrix [up to 10400000] (imputed)	N
622	chr19	4915446	4915447	rs2779165	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19p13.3	UHRF1	rs2779165-G	0.184217	8E-11		0.022108	[0.015-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
622	chr19	4920413	4920414	rs12972366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.3		rs12972366-?	NR	6E-9				NR [~ 8900000] (imputed)	N
622	chr19	4927530	4927531	rs2656918	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.3	UHRF1	rs2656918-T	0.297864	5E-11		0.043434206	[0.031-0.056] unit increase	Affymetrix [7288503] (imputed)	N
622	chr19	4931800	4931801	rs4278866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19p13.3		rs4278866-C	NR	2E-10		0.0421	[0.029-0.055] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
622	chr19	4932278	4932279	rs1840221	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	UHRF1	rs1840221-T	0.2593	1E-12		0.216	[0.16-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
622	chr19	4948861	4948862	rs7249758	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.3	UHRF1	rs7249758-A	0.2039	3E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
622	chr19	4949920	4949921	rs12977104	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.3	NR	rs12977104-G	0.8005	1E-12		0.0412	[0.03-0.053] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
622	chr19	4951850	4951851	rs2602691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	UHRF1	rs2602691-G	NR	3E-8		0.0159078	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
622	chr19	4953350	4953351	rs1982468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.3		rs1982468-G	NR	2E-13		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
622	chr19	4953350	4953351	rs1982468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	UHRF1	rs1982468-G	NR	6E-9		0.0172044	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
622	chr19	4953350	4953351	rs1982468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.3	NR	rs1982468-G	NR	4E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
622	chr19	4954454	4954455	rs2307209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.3		rs2307209-A	NR	5E-47		0.0292	[0.025-0.033] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
622	chr19	4957132	4957133	rs4807003	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19p13.3	UHRF1	rs4807003-A	0.316	9E-12		0.0278	[0.02-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
622	chr19	4957132	4957133	rs4807003	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19p13.3	NR	rs4807003-A	0.3242	2E-6	(women)	0.0284	[0.017-0.04] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
622	chr19	4963865	4963866	rs35166057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.3		rs35166057-T	NR	3E-14		0.0193	[0.014-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
622	chr19	4965063	4965064	rs10853981	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	19p13.3	UHRF1	rs10853981-G	0.668988	1E-8		0.0122887	[0.008-0.0166] unit increase	NR [16516521] (imputed)	N
622	chr19	4965063	4965064	rs10853981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	UHRF1	rs10853981-A	NR	1E-9		0.0181746	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
622	chr19	4965063	4965064	rs10853981	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19p13.3	NR	rs10853981-A	0.33036	5E-8	(Conditioned on chr19:4474725)	0.014787247	[0.0095-0.0201] unit increase	NR [~ 10000000] (imputed)	N
622	chr19	4965063	4965064	rs10853981	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.3	intergenic	rs10853981-A	0.3705	1E-11		0.015	[0.011-0.019] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
622	chr19	4965403	4965404	rs34232444	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.3	UHRF1	rs34232444-C	0.35	3E-8		0.0063122	[0.0041-0.0085] unit increase	NR [16367095] (imputed)	N
622	chr19	4965403	4965404	rs34232444	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19p13.3	NR	rs34232444-T	NR	9E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
622	chr19	4966040	4966041	rs35502362	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	19p13.3	NR	rs35502362-C	0.65	3E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
622	chr19	4967738	4967739	rs12185519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.3	KDM4B	rs12185519-T	NR	3E-10		0.0238728	[0.016-0.031] unit decrease	Affymetrix [323123] (imputed)	N
622	chr19	4967738	4967739	rs12185519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.3	NR	rs12185519-C	0.8081	3E-11		0.036	[0.025-0.047] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
622	chr19	4967738	4967739	rs12185519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs12185519-?	NR	1E-75				NR [~ 8900000] (imputed)	N
622	chr19	4968619	4968620	rs67625472	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19p13.3	KDM4B	rs67625472-T	NR	4E-8		0.00774436	[0.005-0.0105] unit increase	Affymetrix [10061374] (imputed)	N
622	chr19	4969052	4969053	rs57070985	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19p13.3	KDM4B	rs57070985-A	0.6461	2E-12		0.028568	[0.021-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
622	chr19	4969198	4969199	rs58324296	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.3	KDM4B	rs58324296-A	0.646715	9E-13		0.0149665	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
622	chr19	4970723	4970757	rs528694087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.3	KDM4B	rs528694087-A	0.225727	1E-27		0.029022535	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
622	chr19	4970723	4970757	rs528694087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	KDM4B	rs528694087-A	0.225681	4E-21		0.025222838	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
622	chr19	4970723	4970757	rs528694087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.3	KDM4B	rs528694087-A	0.22574	4E-23		0.026358124	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
622	chr19	4975762	4975763	rs28540102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.3	KDM4B	rs28540102-C	0.659623	9E-15		0.018132549	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
623	chr19	4980863	4980864	rs169080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	KDM4B	rs169080-C	0.638048	1E-11		0.015669214	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr19	4980863	4980864	rs169080	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19p13.3	NR	rs169080-C	0.638	2E-9		0.00683666	[0.0046-0.0091] unit decrease	NR [9732723] (imputed)	N
623	chr19	4980863	4980864	rs169080	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.3	KDM4B	rs169080-T	0.3558	1E-10		0.1284	[0.089-0.167] mmHg increase	Affymetrix [NR] (imputed)	N
623	chr19	4980863	4980864	rs169080	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	19p13.3	KDM4B	rs169080-?	NR	1E-6		1.0869565	[1.05-1.14]	Illumina [at least 5000000] (imputed)	N
623	chr19	4984587	4984588	rs33938520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.3		rs33938520-T	NR	1E-8		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
623	chr19	4995925	4995926	rs11880464	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19p13.3	NR	rs11880464-T	0.23	1E-9		0.0134	[0.009-0.0178] unit decrease	NR [NR]	N
623	chr19	4997419	4997420	rs11881751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.3	KDM4B	rs11881751-A	0.2306	6E-12		0.0293054	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
623	chr19	4997419	4997420	rs11881751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.3	KDM4B	rs11881751-A	0.2306	1E-11		0.02892818	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
623	chr19	4997419	4997420	rs11881751	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.3	KDM4B	rs11881751-A	0.2303	1E-12		0.03043911	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
623	chr19	5006217	5006218	rs75792932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	KDM4B	rs75792932-T	0.226954	4E-11		0.017562434	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
623	chr19	5006217	5006218	rs75792932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	KDM4B	rs75792932-T	0.227051	6E-11		0.017331673	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
623	chr19	5006217	5006218	rs75792932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs75792932-T	0.22468	2E-12				Affymetrix, Illumina [23467995] (imputed)	N
623	chr19	5008672	5008673	rs6510834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs6510834-C	0.674774	2E-14				Affymetrix, Illumina [23114412] (imputed)	N
623	chr19	5008672	5008673	rs6510834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.3	NR	rs6510834-C	0.654113	6E-17		0.017145	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
623	chr19	5018958	5018959	rs34889187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs34889187-C	0.256621	2E-13		0.016043	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
623	chr19	5020473	5020474	rs34009962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs34009962-A	0.252286	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
623	chr19	5022603	5022604	rs263063	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	19p13.3	JMJD2B	rs263063-T	0.08	6E-6	(Age 20-81 years)	1.63	[1.32-2.01]	Affymetrix, Illumina [up to 17585496] (imputed)	N
623	chr19	5032498	5032499	rs73921831	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	19p13.3	NR	rs73921831-?	NR	4E-6		2.5415	[0.99-4.09] unit decrease	Illumina [at least 560000] (imputed)	N
623	chr19	5036729	5036730	rs56249413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.3	Intergenic	rs56249413-A	0.2642	6E-10	(MTAG)	0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
623	chr19	5038916	5038917	rs10426930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.3	KDM4B	rs10426930-A	0.3363	3E-9		0.02226901	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
623	chr19	5046069	5046070	rs16992771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.3		rs16992771-?	NR	4E-11				NR [~ 8900000] (imputed)	N
623	chr19	5054509	5054510	rs710956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs710956-?	NR	8E-9				NR [~ 8900000] (imputed)	N
623	chr19	5057086	5057087	rs76998132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.3	Intergenic	rs76998132-A	0.1327	3E-10	(MTAG)	0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
623	chr19	5057086	5057087	rs76998132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.3	Intergenic	rs76998132-A	0.1433	6E-10	(MTAG)	0.0204	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
623	chr19	5057367	5057368	rs62115563	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.3	KDM4B	rs62115563-C	NR	1E-9		0.0226389	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
623	chr19	5066329	5066330	rs2613765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.3		rs2613765-A	NR	1E-10		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
623	chr19	5066329	5066330	rs2613765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.3		rs2613765-A	NR	1E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
623	chr19	5066329	5066330	rs2613765	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19p13.3		rs2613765-G	0.536	6E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
623	chr19	5066329	5066330	rs2613765	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.3		rs2613765-?	NR	2E-12				NR [~ 8900000] (imputed)	N
623	chr19	5066329	5066330	rs2613765	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19p13.3	KDM4B	rs2613765-A	0.4697	9E-22		0.2336	[0.19-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
623	chr19	5071459	5071460	rs28478353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.3	NR	rs28478353-A	NR	2E-11		0.0315	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
623	chr19	5073446	5073447	rs12983032	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	19p13.3	NR	rs12983032-G	0.6566	1E-11		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
623	chr19	5080646	5080647	rs11673509	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	19p13.3	KDM4B	rs11673509-T	0.08	6E-6	(Age 20-60 years)	1.66	[1.34-2.07]	Affymetrix, Illumina [up to 17585496] (imputed)	N
624	chr19	5152732	5152733	rs76494985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.3		rs76494985-A	NR	1E-10		0.0367	[0.026-0.048] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
624	chr19	5152732	5152733	rs76494985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	19p13.3		rs76494985-A	0.06674	1E-10		0.0367419	[0.026-0.048] unit increase	Illumina [13479924] (imputed)	N
624	chr19	5191182	5191182	rs35670745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	19p13.3	PTPRS	rs35670745-CA	0.4342	6E-6		0.0381	[0.022-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
624	chr19	5200652	5200653	rs78166464	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	19p13.3	NR	rs78166464-?	0.01	3E-7		2.83	[1.90-4.21]	Affymetrix, Illumina [~ 6000000] (imputed)	N
624	chr19	5224997	5224998	rs116953931	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.3	PTPRS	rs116953931-A	0.0371	6E-6		1.08	[1.04-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
625	chr19	5268054	5268055	rs139333331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.3	NR	rs139333331-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
625	chr19	5295566	5295567	rs10415188	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	19p13.3	PTPRS	rs10415188-G	0.713277502219069	2E-13		0.0384	[0.028-0.049] SD decrease	Illumina [22400000] (imputed)	N
625	chr19	5352828	5352829	rs1185870102	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs1185870102-T	0.02787	3E-8	(SAA1)	0.1282	NR unit increase	Illumina [1671387] (imputed)	N
626	chr19	5410104	5410105	rs12610785	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	19p13.3	NR	rs12610785-?	NR	7E-9				Illumina [7760689] (imputed)	N
626	chr19	5417492	5417493	rs144464515	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		19p13.3	Intergenic	rs144464515-C	0.01	2E-6	(liability model)	0.46	[0.26-0.66] unit increase	NR [19725427] (imputed)	N
626	chr19	5473119	5473120	rs623264	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	19p13.3	NR	rs623264-G		8E-6		0.1286	[0.072-0.185] SD units increase	NR [10700000] (imputed)	N
627	chr19	5539904	5539905	rs8110045	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.3	NR	rs8110045-G	0.3042	2E-8		0.0154827	[0.01-0.021] unit decrease	Affymetrix [3505788] (imputed)	N
627	chr19	5549608	5549609	rs551086646	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	19p13.3		rs551086646-C	0.0012072	6E-6		0.44281	[0.25-0.63] unit increase	Affymetrix [15580782] (imputed)	N
627	chr19	5553550	5553551	rs636565	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	19p13.3	PLAC2	rs636565-?	NR	6E-6		1.7	1.48-1.91	Illumina [7605010] (imputed)	N
627	chr19	5554320	5554321	rs4510145	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.3	NR	rs4510145-A	0.4483	1E-10		0.0166278	[0.012-0.022] unit decrease	Affymetrix [3505788] (imputed)	N
627	chr19	5555097	5555098	rs12461806	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	19p13.3	TINCR	rs12461806-G	0.913	2E-13		0.012	[0.009-0.015] unit decrease	NR [57525634] (imputed)	N
627	chr19	5582534	5582535	rs732505	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	19p13.3	SAFB2	rs732505-A	0.09	9E-6	(vWF levels)	0.25	[0.13-0.37] IU/dL increase	Illumina [442728]	N
627	chr19	5587539	5587540	rs113123495	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	19p13.3	SAFB2	rs113123495-C	NR	7E-6		10.582	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
627	chr19	5612369	5612370	rs12610010	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	19p13.3	SAFB2	rs12610010-C		3E-6		6.32	[NR] unit increase	Illumina [up to 5481607] (imputed)	N
627	chr19	5618231	5618232	rs806709	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.3	NR	rs806709-A	0.08549	3E-62		0.0703824	[0.062-0.079] unit increase	Affymetrix [3505788] (imputed)	N
627	chr19	5619325	5619326	rs2240239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs2240239-?	NR	1E-8				NR [~ 8900000] (imputed)	N
628	chr19	5644148	5644149	rs7251363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.3	SAFB	rs7251363-A	0.639795	7E-12		0.016115222	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr19	5684774	5684775	rs35832694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.3		rs35832694-A	NR	1E-17		0.0199	[0.015-0.024] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
628	chr19	5684774	5684775	rs35832694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.3		rs35832694-A	NR	2E-15		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
628	chr19	5684774	5684775	rs35832694	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.3	NR	rs35832694-G	0.663515	4E-12		0.014172	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
628	chr19	5684774	5684775	rs35832694	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.3	NR	rs35832694-A	0.336443	3E-22		0.019084	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
628	chr19	5684774	5684775	rs35832694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs35832694-?	NR	3E-11				NR [~ 8900000] (imputed)	N
628	chr19	5694230	5694231	rs2275244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs2275244-G	0.211158	1E-20				Affymetrix, Illumina [24246363] (imputed)	N
628	chr19	5695121	5695122	rs117017689	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	LONP1	rs117017689-G	0.023078	3E-9		0.04357664	[0.029-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr19	5696961	5696962	rs3892355	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.3		rs3892355-G	0.674	2E-15		0.09	[-0.12--0.07] % decrease	Affymetrix [NR] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.3	LONP1	rs3892355-A	0.32464	2E-12		0.016688637	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.3	LONP1	rs3892355-A	0.324852	8E-14		0.017714303	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.3	LONP1	rs3892355-A	0.324691	1E-23		0.021014	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.3	LONP1	rs3892355-A	0.324687	3E-20		0.021706209	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs3892355-A	0.270067	2E-20				Affymetrix, Illumina [20825802] (imputed)	N
628	chr19	5696961	5696962	rs3892355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.3	NR	rs3892355-A	0.324071	8E-23		0.020312	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
628	chr19	5696961	5696962	rs3892355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs3892355-?	NR	1E-22				NR [~ 8900000] (imputed)	N
628	chr19	5711216	5711217	rs2436508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.3	LONP1	rs2436508-C	0.0892230000000001	3E-9		0.022911651	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
628	chr19	5711216	5711217	rs2436508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.3		rs2436508-?	NR	1E-8				NR [~ 8900000] (imputed)	N
628	chr19	5711929	5711930	rs11085147	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.3	NR	rs11085147-T	0.0223642	2E-95		0.0756	[0.069-0.083] unit increase	Affymetrix [23037915] (imputed)	N
628	chr19	5734728	5734729	rs10406410	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	19p13.3		rs10406410-T	NR	4E-6		0.45	[0.32-0.63]	Illumina [7105229] (imputed)	N
628	chr19	5739853	5739853	rs566777150	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.3	NR	rs566777150-AAAAAAAAAAAAAG	0.4453	1E-18		0.0228166	[0.018-0.028] unit increase	Affymetrix [3505788] (imputed)	N
628	chr19	5756644	5756645	rs79696139	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	19p13.3	NR	rs79696139-A	0.0514137	9E-6		1.067	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
629	chr19	5783025	5783026	rs537666246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19p13.3		rs537666246-A	NR	1E-9		558.58	[379.04-738.12] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
629	chr19	5799432	5799433	rs36055559	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19p13.3	DUS3L, NRTN	rs36055559-G	0.834	7E-12		1.0366558		Affymetrix [11880941] (imputed)	N
629	chr19	5799432	5799433	rs36055559	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19p13.3	DUS3L	rs36055559-A	0.163	9E-9		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
629	chr19	5813230	5813231	rs74422372	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT5	5,368 Icelandic ancestry individuals	NA	19p13.3		rs74422372-T	0.03032	2E-28		0.590538	[0.49-0.7] unit decrease	Illumina [7506463] (imputed)	N
629	chr19	5823129	5823133	rs141928144	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.3	Intergenic	rs141928144-?	NR	5E-6	(men)	0.0238986	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
629	chr19	5823243	5823244	rs7250982	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NRTN	rs7250982-G	0.04	3E-14	(Lactoperoxidase, LPO.4801.13.3)	0.48	[0.36-0.6] unit increase	Affymetrix [10572788] (imputed)	N
629	chr19	5827764	5827765	rs79744308	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LPO	5,364 Icelandic ancestry individuals	NA	19p13.3		rs79744308-A	0.03271	5E-25		0.546929	[0.44-0.65] unit increase	Illumina [7506463] (imputed)	N
629	chr19	5827764	5827765	rs79744308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.3		rs79744308-A	NR	1E-15		0.0378	[0.029-0.047] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
629	chr19	5828063	5828064	rs7255720	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	19p13.3	NRTN	rs7255720-G	0.956	2E-55	(plasma glycan peak 110)	1.138	[1.01-1.27] unit increase	Illumina [8557543] (imputed)	N
629	chr19	5830301	5830302	rs778809	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19p13.3	NR	rs778809-?	NR	6E-14	(Fucosyltransferase 3)			Illumina [~ 4000000] (imputed)	N
629	chr19	5830301	5830302	rs778809	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	FUT5	rs778809-A	0.301	1E-118	(Alpha-(1,3)-fucosyltransferase 5, FUT5.4549.78.2)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5831839	5831840	rs17855739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.3		rs17855739-T	NR	1E-22		0.0452	[0.036-0.054] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
629	chr19	5831839	5831840	rs17855739	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19p13.3	FUT6	rs17855739-C	0.96	8E-24		10.1	z-score increase	Affymetrix [4314223] (imputed)	N
629	chr19	5832772	5832773	rs78060698	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p13.3	FUT6	rs78060698-G	0.958119	1E-15		0.00443643	[0.0033-0.0056] unit decrease	Affymetrix [13995440] (imputed)	N
629	chr19	5833036	5833037	rs3859563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT5	5,368 Icelandic ancestry individuals	NA	19p13.3		rs3859563-T	0.1968	4E-74		0.411734	[0.37-0.46] unit decrease	Illumina [7506463] (imputed)	N
629	chr19	5833112	5833113	rs74421545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.3	NR	rs74421545-C	NR	6E-10		0.041	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
629	chr19	5833112	5833113	rs74421545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.3	NR	rs74421545-C	NR	4E-9		0.0392	[0.026-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
629	chr19	5833112	5833113	rs74421545	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.3	NR	rs74421545-C	NR	2E-19		0.06	[0.047-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
629	chr19	5833278	5833279	rs10420107	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	FUT5	rs10420107-G	0.765625	2E-91	(FUT5, 4549_78_2)	0.5559136	[0.5-0.61] unit increase	Illumina [> 1000000] (imputed)	N
629	chr19	5834211	5834212	rs17271883	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	FUT6	rs17271883-G	0.38	5E-132	(CA19-9)	0.282	[0.20-0.37] U/ml increase	Affymetrix, Illumina [NR] (imputed)	N
629	chr19	5835676	5835677	rs12019136	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels (adjusted for ABO rs2519093 genotypes)	4,525 East Asian ancestry individuals	NA	19p13.3		rs12019136-?	NR	1E-12				Affymetrix [7338548] (imputed)	N
629	chr19	5835676	5835677	rs12019136	34757267	Teng MS	2021-10-15	Atherosclerosis	Genome-wide association study revealed novel candidate gene loci associated with soluble E-selectin levels in a Taiwanese population.	Soluble E-selectin levels	4,525 East Asian ancestry individuals	NA	19p13.3		rs12019136-?	NR	1E-11		0.0422	[0.03-0.054] unit increase	Affymetrix [7338548] (imputed)	N
629	chr19	5835676	5835677	rs12019136	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	19p13.3	FUT6	rs12019136-A	0.05	2E-13				Illumina [NR]	N
629	chr19	5835676	5835677	rs12019136	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19p13.3	C3, NRTN, FUT6	rs12019136-?	NR	2E-15	(EA)	1.4084507		Illumina [12023830] (imputed)	N
629	chr19	5839612	5839613	rs778798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.3	FUT6	rs778798-C	0.73286	1E-13		0.018658858	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
629	chr19	5839612	5839613	rs778798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.3	FUT6	rs778798-C	0.732866	2E-13		0.01846737	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
629	chr19	5839612	5839613	rs778798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs778798-C	0.764142	4E-16				Affymetrix, Illumina [19905671] (imputed)	N
629	chr19	5839612	5839613	rs778798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.3	NR	rs778798-C	0.732809	4E-18		0.020339	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
629	chr19	5839612	5839613	rs778798	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	19p13.3	FUT6	rs778798-C	NR	3E-6		0.0279609	[0.016-0.04] unit increase	Illumina [13520550] (imputed)	N
629	chr19	5839612	5839613	rs778798	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	19p13.3	FUT6	rs778798-C	0.74	5E-8		0.0215724	[0.014-0.029] unit decrease	Illumina [13519193] (imputed)	N
629	chr19	5839612	5839613	rs778798	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.3	FUT6	rs778798-C	NR	2E-6	(women)	0.0243623	[0.014-0.034] unit decrease	Illumina [13520550] (imputed)	N
629	chr19	5839612	5839613	rs778798	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.3	FUT6	rs778798-C	0.74	6E-11		0.0235424	[0.017-0.031] unit decrease	Illumina [13520550] (imputed)	N
629	chr19	5839612	5839613	rs778798	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	19p13.3	FUT6	rs778798-C	0.74	9E-16		0.0335916	[0.025-0.042] unit decrease	Illumina [13520550] (imputed)	N
629	chr19	5839612	5839613	rs778798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19p13.3	FUT6	rs778798-C	0.7315	2E-12		0.02817483	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
629	chr19	5839612	5839613	rs778798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19p13.3	FUT6	rs778798-C	0.7315	2E-12		0.02815868	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
629	chr19	5839612	5839613	rs778798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19p13.3	FUT6	rs778798-C	0.7316	2E-9		0.0241134	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
629	chr19	5839745	5839746	rs3760776	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	FUT6	rs3760776-T	0.20	2E-56	(CA19-9)	0.169	[0.11-0.22] U/ml decrease	Affymetrix, Illumina [NR] (imputed)	N
629	chr19	5839745	5839746	rs3760776	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	19p13.3	FUT6	rs3760776-?	NR	4E-13		49.78	[36.41-63.15] pg/ml increase	Illumina [1940245] (imputed)	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.22	8E-10	(DG7, women)	0.31443638	[0.21-0.41] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.22	2E-9	(FUC-A, women)	0.30454952	[0.21-0.4] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.22	2E-13	(DG12, women)	0.3748475	[0.27-0.48] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.22	1E-8	(GP14, women)	0.29289567	[0.19-0.39] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.22	1E-16	(DG9, women)	0.42719403	[0.33-0.53] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.14	4E-9	(GP14, men)	0.34200767	[0.23-0.46] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.14	4E-13	(DG7, men)	0.42453882	[0.31-0.54] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.14	3E-14	(DG9, men)	0.44469345	[0.33-0.56] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.14	3E-12	(FUC-A, men)	0.40803945	[0.29-0.52] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.13	9E-17	(GP14)	0.32639873	[0.25-0.4] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.13	5E-19	(DG12)	0.3502162	[0.27-0.43] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.13	3E-29	(DG9)	0.44176945	[0.36-0.52] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.13	3E-20	(FUC-A)	0.36310858	[0.29-0.44] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.13	1E-21	(DG7)	0.37525213	[0.3-0.45] (zscore) decrease	Illumina [NR]	N
629	chr19	5839745	5839746	rs3760776	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.11	9E-10	(DG12)	0.3	[0.20-0.40] unit decrease	Illumina [~ 300000]	N
629	chr19	5839745	5839746	rs3760776	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.11	4E-17	(DG9)	0.41	[0.31-0.51] unit decrease	Illumina [~ 300000]	N
629	chr19	5839745	5839746	rs3760776	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.11	3E-12	(DG7)	0.34	[0.24-0.44] unit decrease	Illumina [~ 300000]	N
629	chr19	5839745	5839746	rs3760776	21203500	Lauc G	2010-12-23	PLoS Genet	Genomics meets glycomics-the first GWAS study of human N-Glycome identifies HNF1? as a master regulator of plasma protein fucosylation.	N-glycan levels	2,559 European ancestry individuals	NA	19p13.3	NRTN, FUT6, FUT3	rs3760776-A	0.11	1E-12	(FUC-A)	0.34	[0.24-0.44] unit decrease	Illumina [~ 300000]	N
629	chr19	5840618	5840619	rs708686	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT3	5,361 Icelandic ancestry individuals	NA	19p13.3		rs708686-T	0.2264	1E-258		0.682847	[0.64-0.72] unit decrease	Illumina [7506463] (imputed)	N
629	chr19	5840618	5840619	rs708686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gallbladder polyp	458 European ancestry cases, 340,083 European ancestry controls, 843 East Asian ancestry cases, 167,459 East Asian ancestry controls	NA	19p13.3		rs708686-T	NR	1E-11		0.2959	[0.21-0.38] unit increase	Affymetrix, Illumina [20456458] (imputed)	N
629	chr19	5840618	5840619	rs708686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19p13.3		rs708686-T	NR	5E-21		0.0839	[0.066-0.101] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
629	chr19	5840618	5840619	rs708686	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.3	FUT6	rs708686-C	0.731246	7E-16		0.0047141	[0.0036-0.0059] unit decrease	Affymetrix [13995440] (imputed)	N
629	chr19	5840618	5840619	rs708686	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose II) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19p13.3		rs708686-?	NR	3E-12				Illumina [1128286]	N
629	chr19	5840618	5840619	rs708686	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose II)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19p13.3		rs708686-?	NR	8E-13				Illumina [1128286]	N
629	chr19	5840618	5840619	rs708686	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose I) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19p13.3		rs708686-?	NR	7E-10				Illumina [1128286]	N
629	chr19	5840618	5840619	rs708686	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (difucosyllacto-N-tetrose) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19p13.3		rs708686-?	NR	4E-15				Illumina [1128286]	N
629	chr19	5840618	5840619	rs708686	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (difucosyllacto-N-tetrose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19p13.3		rs708686-?	NR	6E-14				Illumina [1128286]	N
629	chr19	5840618	5840619	rs708686	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	19p13.3	FUT6	rs708686-T	0.258	2E-14		0.031	[0.039-0.023] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
629	chr19	5840618	5840619	rs708686	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19p13.3	FUT6	rs708686-T	0.231	5E-16		0.1	[0.08-0.13] unit increase	Illumina [NR] (imputed)	N
629	chr19	5840618	5840619	rs708686	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 19.9 levels	9,945 Icelandic ancestry individuals	NA	19p13.3	FUT6	rs708686-T	0.231	2E-179		0.52	[0.56-0.49] unit decrease	Illumina [NR] (imputed)	N
629	chr19	5840618	5840619	rs708686	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	19p13.3	FUT6	rs708686-?		7E-20		1.26	[1.20-1.32]	Affymetrix, Illumina [43000000] (imputed)	N
629	chr19	5840618	5840619	rs708686	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	FUT3	rs708686-C	0.77078125	3E-126	(FUT3, 4548_4_2)	0.65749896	[0.61-0.71] unit increase	Illumina [> 1000000] (imputed)	N
629	chr19	5840618	5840619	rs708686	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	FUT3	rs708686-T	0.274	3E-273	(Galactoside 3(4)-L-fucosyltransferase, FUT3.4548.4.2)	0.85	[0.81-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5840618	5840619	rs708686	28334792	Nongmaithem SS	2017-02-27	Hum Mol Genet	GWAS identifies population-specific new regulatory variants in FUT6 associated with plasma B12 concentrations in Indians.	Vitamin B12 levels	1,001 Indo-European ancestry adults	1,713 Indo-European ancestry adults, 690 Indo-European ancestry children, 481 Dravidian ancestry adults, 534 Dravidian ancestry children	19p13.3	FUT6	rs708686-T	NR	6E-15		0.2	[NR] pmol/l increase	Affymetrix [8900000] (imputed)	N
629	chr19	5840925	5840926	rs10409772	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19p13.3	FUT6, FUT3	rs10409772-A	0.073	2E-13		7.37	z-score increase	Affymetrix [4311822] (imputed)	N
629	chr19	5840925	5840926	rs10409772	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs10409772-A	0.078	5E-54	(Galactoside 3(4)-L-fucosyltransferase, FUT3.4548.4.2)	0.69	[0.61-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5841355	5841356	rs3760775	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT5	5,368 Icelandic ancestry individuals	NA	19p13.3		rs3760775-T	0.05958	4E-171		1.00664	[0.94-1.08] unit decrease	Illumina [7506463] (imputed)	N
629	chr19	5841355	5841356	rs3760775	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs3760775-T	0.059	2E-53	(Alpha-(1,3)-fucosyltransferase 5, FUT5.4549.78.2)	0.8	[0.7-0.9] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5841355	5841356	rs3760775	28334792	Nongmaithem SS	2017-02-27	Hum Mol Genet	GWAS identifies population-specific new regulatory variants in FUT6 associated with plasma B12 concentrations in Indians.	Vitamin B12 levels	1,001 Indo-European ancestry adults	1,713 Indo-European ancestry adults, 690 Indo-European ancestry children, 481 Dravidian ancestry adults, 534 Dravidian ancestry children	19p13.3	FUT6, FUT3	rs3760775-A	NR	1E-23		0.25	[NR] pmol/l increase	Affymetrix [8900000] (imputed)	N
629	chr19	5841355	5841356	rs3760775	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19p13.3	FUT6	rs3760775-?		8E-19				Illumina [709211] (imputed)	N
629	chr19	5841355	5841356	rs3760775	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	FUT6	rs3760775-T	0.33	3E-290	(CA19-9)	0.481	[0.44-0.52] U/ml decrease	Affymetrix, Illumina [NR] (imputed)	N
629	chr19	5841355	5841356	rs3760775	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.3	FUT6	rs3760775-T	0.33	1E-35	(CEA)	0.073	[0.048-0.098] ng/ml increase	Affymetrix, Illumina [NR] (imputed)	N
629	chr19	5842219	5842220	rs12982233	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs12982233-T	0.386	2E-122	(Galactoside 3(4)-L-fucosyltransferase, FUT3.4548.4.2)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
629	chr19	5844536	5844537	rs778986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.3		rs778986-?	NR	3E-8				NR [~ 8900000] (imputed)	N
629	chr19	5844536	5844537	rs778986	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.3	FUT3, AC024592.9, FUT6	rs778986-A	0.2043173	9E-73	(Galactoside 3(4)-L-fucosyltransferase)	0.9298	[0.84-1.02] unit decrease	Affymetrix [509946]	N
629	chr19	5844648	5844649	rs812936	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs812936-A	0.8	3E-20		0.0925	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
629	chr19	5844648	5844649	rs812936	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs812936-A	0.815	5E-196	(Galactoside 3(4)-L-fucosyltransferase, FUT3.4548.4.2)	0.85	[0.79-0.91] unit increase	Affymetrix [10572788] (imputed)	N
629	chr19	5844791	5844792	rs28362459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gallbladder polyp	843 East Asian ancestry cases, 167,459 East Asian ancestry controls	NA	19p13.3		rs28362459-C	0.300010995	5E-11		0.3759455	[0.26-0.49] unit increase	Illumina [13133316] (imputed)	N
629	chr19	5844791	5844792	rs28362459	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.3	FUT3, AC024592.9	rs28362459-C	0.1013171	1E-20	(Galactoside 3(4)-L-fucosyltransferase)	0.6757	[0.54-0.81] unit decrease	Affymetrix [509946]	N
629	chr19	5846228	5846229	rs4807052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT3	5,361 Icelandic ancestry individuals	NA	19p13.3		rs4807052-T	0.2798	3E-69		0.353219	[0.31-0.39] unit increase	Illumina [7506463] (imputed)	N
629	chr19	5846276	5846277	rs150092813	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs150092813-T	0.93	7E-18		0.1341	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
629	chr19	5847999	5848000	rs2608894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19p13.3		rs2608894-C	0.919483521	1E-9		0.18437092	[0.12-0.24] unit decrease	Illumina [13429768] (imputed)	N
629	chr19	5847999	5848000	rs2608894	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 19.9 levels	9,945 Icelandic ancestry individuals	NA	19p13.3	FUT3	rs2608894-T	0.171	4E-10		0.21	[0.27-0.14] unit decrease	Illumina [NR] (imputed)	N
629	chr19	5847999	5848000	rs2608894	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	FUT3	rs2608894-C	0.757	1E-12	(Protein FAM3B, FAM3B.9177.6.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5851800	5851801	rs2306969	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19p13.3	FUT3	rs2306969-?	NR	3E-8				Illumina [709211] (imputed)	N
629	chr19	5862741	5862742	rs778977	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT5	5,368 Icelandic ancestry individuals	NA	19p13.3		rs778977-T	0.3781	2E-18		0.16558	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
629	chr19	5866723	5866724	rs4807054	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	NR	rs4807054-A	0.414	9E-50	(Alpha-(1,3)-fucosyltransferase 5, FUT5.4549.78.2)	0.37	[0.33-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
629	chr19	5872402	5872403	rs12982903	28610988	Kerr KF	2017-06-10	Heart Rhythm	Genome-wide association study of heart rate and its variability in Hispanic/Latino cohorts.	Heart rate variability traits (SDNN)	13,184 Hispanic/Latino individuals	7,073 European ancestry individuals, 2,908 African American individuals	19p13.3	FUT5	rs12982903-G	0.93	7E-16	(Hispanic, EA)	0.129	[0.098-0.160] unit increase	Affymetrix, Illumina [17209740] (imputed)	N
629	chr19	5873727	5873728	rs8108862	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19p13.3	FUT5, NDUFA11	rs8108862-C	0.910474	2E-9		0.0608819	[0.041-0.081] unit increase	Affymetrix [509255] (imputed)	N
629	chr19	5873727	5873728	rs8108862	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19p13.3	FUT5, NDUFA11	rs8108862-C	0.910434	9E-10		0.0623899	[0.042-0.082] unit increase	Affymetrix [509255] (imputed)	N
629	chr19	5873727	5873728	rs8108862	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19p13.3	FUT5, NDUFA11	rs8108862-C	0.910428	4E-10		0.063816	[0.044-0.084] unit increase	Affymetrix [509255] (imputed)	N
629	chr19	5883972	5883973	rs12974377	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19p13.3	FUT5, NDUFA11	rs12974377-C	0.91143	7E-9		0.0593496	[0.039-0.079] unit increase	Affymetrix [509255] (imputed)	N
629	chr19	5889644	5889645	rs2608895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.3		rs2608895-?	NR	4E-8				NR [~ 8900000] (imputed)	N
629	chr19	5893057	5893058	rs12980262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	19p13.3	NDUFA11	rs12980262-A	0.076318	2E-24		0.060229	[0.048-0.072] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5893057	5893058	rs12980262	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	19p13.3	NDUFA11	rs12980262-A	0.076318	2E-23	(EA)	0.060229	[0.048-0.072] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5894385	5894386	rs12974440	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19p13.3	NDUFA11	rs12974440-G	0.916652	1E-10		0.0665371	[0.046-0.087] unit increase	Affymetrix [509255] (imputed)	N
629	chr19	5894385	5894386	rs12974440	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	19p13.3	NDUFA11	rs12974440-A	0.073	5E-41		0.243631	[0.21-0.28] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5894385	5894386	rs12974440	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	19p13.3	NDUFA11	rs12974440-A	0.0734	2E-23	(EA)	0.060187	[0.048-0.072] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5894385	5894386	rs12974440	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	19p13.3	NDUFA11	rs12974440-A	0.077454	4E-46	(EA)	0.11701	[0.1-0.13] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5894583	5894584	rs12974991	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	19p13.3	NDUFA11	rs12974991-G	0.912	2E-9		0.568	[0.38-0.75] bpm increase	Affymetrix [~ 7800000] (imputed)	N
629	chr19	5894583	5894584	rs12974991	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	19p13.3	NDUFA11	rs12974991-G	0.911635	2E-6		0.50801	[0.3-0.72] bpm increase	Affymetrix [~ 7800000] (imputed)	N
629	chr19	5894583	5894584	rs12974991	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (pvRSA/HF)	24,088 European ancestry individuals	9,377 European ancestry individuals, 404 Hispanic/Latino individuals, 1,901 African American individuals	19p13.3	NDUFA11	rs12974991-A	0.074	2E-41	(EA)	0.24107	[0.2-0.28] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
629	chr19	5894583	5894584	rs12974991	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	19p13.3	NDUFA11	rs12974991-A	0.077727	2E-63		0.11701	[0.1-0.13] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
630	chr19	5900246	5900247	rs778800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs778800-?	NR	2E-10				NR [~ 8900000] (imputed)	N
630	chr19	5907422	5907423	rs189265675	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.3	VMAC	rs189265675-T	1.0	5E-6	(AA)	0.597	unit increase	Illumina [NR] (imputed)	N
630	chr19	5908761	5908762	rs111563375	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.3	VMAC	rs111563375-T	1.0	5E-6	(AA)	0.591	unit increase	Illumina [NR] (imputed)	N
630	chr19	5925508	5925510	rs541814549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs541814549-A	0.01568	2E-9	(ACSM2B)	1.379	NR unit increase	Illumina [1671387] (imputed)	N
630	chr19	5927095	5927096	rs274794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.3		rs274794-?	NR	1E-14				NR [~ 8900000] (imputed)	N
630	chr19	5936688	5936689	rs12462305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	RANBP3	rs12462305-A	0.59068	4E-11		0.014949516	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
630	chr19	5982487	5982488	rs6510866	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19p13.3	NR	rs6510866-G	0.305615	9E-15		0.0260796	[0.019-0.033] unit decrease	NR [19129689] (imputed)	N
630	chr19	5984814	5984815	rs434040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	19p13.3		rs434040-?	NR	4E-14				NR [~ 8900000] (imputed)	N
630	chr19	6011140	6011141	rs505401	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.3	RFX2, CTC-232P5.1	rs505401-T	0.1056	2E-10		0.03842616	[0.027-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
631	chr19	6073368	6073369	rs10419786	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	19p13.3		rs10419786-C	NR	1E-6		4.798	[2.91-6.69] unit increase	Illumina [NR] (imputed)	N
631	chr19	6080481	6080482	rs11880706	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.3	NR	rs11880706-?	NR	2E-6		1.4393	[NR]	Affymetrix [722112]	N
631	chr19	6093395	6093396	rs10405373	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.3	RFX2	rs10405373-A	0.899363	1E-9		0.0187851	[0.013-0.025] unit increase	NR [13737936] (imputed)	N
631	chr19	6093395	6093396	rs10405373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.3		rs10405373-?	NR	7E-9				NR [~ 8900000] (imputed)	N
631	chr19	6100432	6100433	rs10418205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.3	RFX2	rs10418205-G	0.372738	9E-12		0.015906071	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
631	chr19	6102779	6102780	rs10405147	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.3	NR	rs10405147-G	0.910394	2E-25		0.035206	[0.029-0.042] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
631	chr19	6105208	6105209	rs10402293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	RFX2	rs10402293-G	0.089267	2E-19		0.03553831	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
631	chr19	6107027	6107028	rs10416027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs10416027-C	0.887648	2E-24				Affymetrix, Illumina [17210439] (imputed)	N
631	chr19	6116804	6116805	rs7253993	24629169	Ising M	2014-04-08	Genes Brain Behav	Genetic effects on information processing speed are moderated by age--converging results from three samples.	Perceptual and visual search speed (trail making test A)	890 European ancestry individuals	NA	19p13.3	NR	rs7253993-?	NR	7E-6				Illumina [~ 290000]	N
631	chr19	6122266	6122267	rs7256341	24629169	Ising M	2014-04-08	Genes Brain Behav	Genetic effects on information processing speed are moderated by age--converging results from three samples.	Perceptual and visual search speed (trail making test A)	890 European ancestry individuals	NA	19p13.3	NR	rs7256341-?	NR	6E-6				Illumina [~ 290000]	N
631	chr19	6137627	6137635	rs1461313622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs1461313622-TTTTA	0.01045	8E-11	(LRRC59)	0.1442	NR unit increase	Illumina [1671387] (imputed)	N
631	chr19	6137627	6137635	rs1461313622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs1461313622-TTTTA	0.01045	3E-9	(ENO1)	1.965	NR unit increase	Illumina [1671387] (imputed)	N
631	chr19	6137627	6137635	rs1461313622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs1461313622-TTTTA	0.01045	2E-9	(KATNAL2)	0.05894	NR unit increase	Illumina [1671387] (imputed)	N
632	chr19	6166664	6166665	rs8111212	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	19p13.3	ACSBG2	rs8111212-C	NR	5E-6		4.581	NR z score decrease	Illumina [7839440] (imputed)	N
632	chr19	6181068	6181069	rs535716280	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs535716280-G	0.01742	4E-9	(LRRC59)	0.105	NR unit increase	Illumina [1671387] (imputed)	N
632	chr19	6215041	6215042	rs3787073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	MLLT1	rs3787073-C	0.479253	2E-13		0.017220069	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
632	chr19	6215041	6215042	rs3787073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.3		rs3787073-?	NR	4E-8				NR [~ 8900000] (imputed)	N
632	chr19	6221886	6221887	rs3787069	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	19p13.3	MLLT1	rs3787069-G	NR	5E-6	(Irritable dimension)	0.6959	[0.4-0.99] unit decrease	Illumina [1871025] (imputed)	N
632	chr19	6226005	6226006	rs4807065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs4807065-?	NR	4E-14				NR [~ 8900000] (imputed)	N
632	chr19	6232679	6232680	rs4807067	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	19p13.3	NR	rs4807067-T	0.054	3E-6		0.2388	[0.14-0.34] unit increase	Illumina [up to 730525]	N
632	chr19	6258073	6258074	rs34263337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	MLLT1	rs34263337-A	0.142337	1E-15		0.025790835	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
633	chr19	6340462	6340463	rs10421078	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	19p13.3	NR	rs10421078-?	NR	3E-6	(AA)	26.09	[24.07-28.11]	Illumina [905956]	N
634	chr19	6468330	6468331	rs62107586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	DENND1C	rs62107586-C	0.447723	1E-9		0.0135093955	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
634	chr19	6475612	6475613	rs3745571	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cyclophosphamide)	168 Japanese ancestry cases, 335 Japanese ancestry controls	NA	19p13.3	DENND1C	rs3745571-T	0.67	8E-6	(Dominant model)	1.73	[1.276-2.345]	Illumina [733202]	N
634	chr19	6485496	6485497	rs60597914	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.3		rs60597914-T	0.31	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
634	chr19	6499230	6499231	rs66479618	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	19p13.3	TUBB4A	rs66479618-T	0.1997	6E-12		0.968809	[NR]	Illumina [12493444] (imputed)	N
634	chr19	6501997	6501998	rs11672092	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	19p13.3	TUBB4A	rs11672092-T	0.22	6E-10				NR [9312144] (imputed)	N
634	chr19	6516593	6516594	rs10415368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.3	TNFSF9	rs10415368-?	NR	9E-6	(isoleucine)	0.9002211	[0.5-1.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
635	chr19	6554327	6554328	rs62106960	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC010503.3	rs62106960-?	NR	3E-8	(male)	2.04487	[NR] unit decrease	Affymetrix [NR] (imputed)	N
635	chr19	6554327	6554328	rs62106960	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC010503.3	rs62106960-?	NR	1E-9		1.25962	[NR] unit decrease	Affymetrix [NR] (imputed)	N
635	chr19	6573510	6573511	rs72993079	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	19p13.3	NR	rs72993079-?	0.05	4E-7	(EA)	2.14	[1.60-2.87]	Affymetrix, Illumina [~ 6000000] (imputed)	N
635	chr19	6579029	6579029	rs755023315	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19p13.3	CD70	rs755023315-G	0.29	2E-8				NR [> 9500000] (imputed)	N
635	chr19	6579029	6579029	rs755023315	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19p13.3	CD70	rs755023315-G	0.29203500000000004	3E-9		1.0412879	1.02750184475969-1.05525880650068]	NR [9572556] (imputed)	N
635	chr19	6590872	6590873	rs199561952	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CD70	rs199561952-?	NR	2E-8	(female)	0.501271	[NR] unit increase	Affymetrix [NR] (imputed)	N
635	chr19	6665019	6665020	rs344560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.3		rs344560-C	NR	1E-11		0.0274	[0.019-0.035] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
635	chr19	6665019	6665020	rs344560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.3	NR	rs344560-C	NR	2E-9		0.0316	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
635	chr19	6665019	6665020	rs344560	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor ligand superfamily member 14 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs344560-T	0.06	8E-173		0.6189	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
635	chr19	6665019	6665020	rs344560	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19p13.3	TNFSF14	rs344560-C	0.96	1E-31		0.75	unit increase	Illumina [5270624] (imputed)	N
635	chr19	6668971	6668972	rs1077667	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.3	TNFSF14	rs1077667-C	NR	8E-33		1.1546	NR	Affymetrix, Illumina [8278136] (imputed)	N
635	chr19	6668971	6668972	rs1077667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.3	TNFSF14	rs1077667-T	0.2085	5E-11		0.02873288	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
635	chr19	6668971	6668972	rs1077667	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.3	TNFSF14	rs1077667-T	0.2085	8E-10		0.02693343	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
635	chr19	6668971	6668972	rs1077667	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19p13.3	TNFSF14	rs1077667-G	0.79	2E-24		1.16		Illumina [161311]	N
635	chr19	6668971	6668972	rs1077667	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.3	TNFSF14	rs1077667-G	NR	9E-14		1.16	[1.14-1.18]	Illumina [465434]	N
635	chr19	6669283	6669284	rs138811446	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor ligand superfamily member 14 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs138811446-T	0.052	2E-16		0.2128	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
635	chr19	6669933	6669934	rs2291668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19p13.3		rs2291668-A	0.38771	3E-9		0.0267221	[0.018-0.036] unit decrease	Illumina [13471440] (imputed)	N
635	chr19	6669933	6669934	rs2291668	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.3	NR	rs2291668-A	NR	3E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
635	chr19	6671368	6671369	rs12461821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.3		rs12461821-A	NR	1E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
635	chr19	6671368	6671369	rs12461821	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	19p13.3	TNFSF14	rs12461821-?	NR	7E-11		0.03835	[0.027-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
635	chr19	6675988	6675989	rs413141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFSF14	5,351 Icelandic ancestry individuals	NA	19p13.3		rs413141-A	0.1389	1E-13		0.194464	[0.14-0.25] unit increase	Illumina [7506463] (imputed)	N
635	chr19	6675988	6675989	rs413141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.3		rs413141-G	NR	1E-33		0.0332	[0.028-0.038] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
635	chr19	6675988	6675989	rs413141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19p13.3		rs413141-A	0.137	1E-22				Affymetrix [10369434] (imputed)	N
635	chr19	6675988	6675989	rs413141	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.3	C3	rs413141-A	0.136697	1E-14		0.00552593	[0.004-0.007] unit decrease	Affymetrix [13995440] (imputed)	N
635	chr19	6675988	6675989	rs413141	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor ligand superfamily member 14 levels	21,758 European ancestry individuals	9,173 individuals	19p13.3		rs413141-A	0.16	2E-39		0.185	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.3	C3	rs413141-G	0.863063	4E-10		0.02017577	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.3	C3	rs413141-G	0.863093	6E-24		0.032823738	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.3	C3	rs413141-A	0.136926	6E-42		0.044044662	[0.038-0.05] unit increase	Affymetrix [93095623] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	C3	rs413141-G	0.863045	1E-13		0.024039771	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs413141-G	0.813462	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.3	NR	rs413141-G	0.861912	9E-14		0.020279	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs413141-G	0.828193	8E-58				Affymetrix, Illumina [23467995] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.3	NR	rs413141-G	0.862523	1E-54		0.043013	[0.038-0.048] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
635	chr19	6675988	6675989	rs413141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.3	NR	rs413141-G	0.862502	1E-21		0.026632	[0.021-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
635	chr19	6675988	6675989	rs413141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.3		rs413141-?	NR	4E-9				NR [~ 8900000] (imputed)	N
635	chr19	6675988	6675989	rs413141	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	TNFSF14	rs413141-G	0.8684375	4E-8	(TNFSF14, 5355_69_3)	0.19962204	[0.13-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
635	chr19	6675988	6675989	rs413141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.3	C3	rs413141-G	0.8627	5E-16		0.04260843	[0.032-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr19	6689064	6689065	rs11085192	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19p13.3	NR	rs11085192-T	0.927	1E-10		0.84	[0.79-0.89]	Illumina [11270530] (imputed)	N
636	chr19	6690770	6690771	rs3745567	23028341	Yang X	2012-09-13	PLoS Genet	Genome-wide association study for serum complement C3 and C4 levels in healthy Chinese subjects.	Complement C3 and C4 levels	1,999 Han Chinese ancestry male individuals	1,496 Han Chinese ancestry male individuals	19p13.3	C3	rs3745567-T	0.06	2E-9	(Serum level of C3)	0.09	[0.070-0.110] g/L increase	Illumina [1940245] (imputed)	N
636	chr19	6696793	6696794	rs11569479	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C3	5,362 Icelandic ancestry individuals	NA	19p13.3		rs11569479-C	0.1325	6E-17		0.234444	[0.18-0.29] unit decrease	Illumina [7506463] (imputed)	N
636	chr19	6696793	6696794	rs11569479	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	C3	rs11569479-T	0.86421875	8E-16	(C3, 5803_24_3)	0.29383227	[0.22-0.37] unit increase	Illumina [> 1000000] (imputed)	N
636	chr19	6696793	6696794	rs11569479	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	C3	rs11569479-T	0.86421875	1E-8	(C3, 2683_1_2)	0.20976445	[0.14-0.28] unit increase	Illumina [> 1000000] (imputed)	N
636	chr19	6698453	6698454	rs11569470	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C3 levels	3,210 European ancestry individuals, 589 African ancestry individuals, 150 East Asian ancestry individuals	NA	19p13.3	NR	rs11569470-G	0.12	1E-8		0.19	[0.13-0.24] unit increase	NR [NR] (imputed)	N
636	chr19	6698453	6698454	rs11569470	33941608	Khan A	2021-05-03	J Am Soc Nephrol	Medical Records-Based Genetic Studies of the Complement System.	Complement C3 levels	3,210 European ancestry individuals, 589 African ancestry individuals, 150 East Asian ancestry individuals	NA	19p13.3	C3	rs11569470-G	0.14	1E-7	(EA)	0.18	[0.12-0.23] unit increase	NR [NR] (imputed)	N
636	chr19	6706040	6706041	rs8107911	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMC4	5,356 Icelandic ancestry individuals	NA	19p13.3		rs8107911-G	0.2152	4E-18		0.189359	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
636	chr19	6706297	6706298	rs8112351	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.3	C3	rs8112351-C	0.76	1E-135	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.66	[0.6-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
636	chr19	6710781	6710782	rs2230203	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19p13.3	NR	rs2230203-?		8E-10	(C3)	0.1912	[NR] unit decrease	Illumina [NR]	N
636	chr19	6713174	6713175	rs11085197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFRSF14	5,347 Icelandic ancestry individuals	NA	19p13.3		rs11085197-C	0.2308	2E-19		0.183239	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
636	chr19	6713261	6713262	rs1047286	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C3	5,366 Icelandic ancestry individuals	NA	19p13.3		rs1047286-A	0.2306	7E-34		0.271959	[0.23-0.32] unit decrease	Illumina [7506463] (imputed)	N
636	chr19	6716278	6716279	rs11569415	32843070	Winkler TW	2020-08-26	BMC Med Genomics	Genome-wide association meta-analysis for early age-related macular degeneration highlights novel loci and insights for advanced disease.	Early age-related macular degeneration	14,034 European ancestry cases, 91,214 European ancestry controls	NA	19p13.3	C3	rs11569415-A	0.21	2E-10		1.12	[1.08-1.16]	Affymetrix, Illumina [11702853] (imputed)	N
636	chr19	6718145	6718146	rs147859257	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19p13.3	C3	rs147859257-?	NR	3E-28	(EA)	2.86		Illumina [12023830] (imputed)	N
636	chr19	6718386	6718387	rs2230199	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HLA-DRB3	5,351 Icelandic ancestry individuals	NA	19p13.3		rs2230199-C	0.2359	2E-21		0.197548	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
636	chr19	6718386	6718387	rs2230199	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	19p13.3	C3	rs2230199-G	0.24	1E-9		1.45		Illumina [8974355] (imputed)	N
636	chr19	6718386	6718387	rs2230199	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19p13.3	C3	rs2230199-?	NR	4E-69	(EA)	1.43		Illumina [12023830] (imputed)	N
636	chr19	6718386	6718387	rs2230199	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	19p13.3	C3	rs2230199-C	0.2	1E-41		1.42	[1.37-1.47]	Affymetrix, Illumina [2442884] (imputed)	N
636	chr19	6718386	6718387	rs2230199	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (geographic atrophy)	819 European ancestry geographic atrophy cases, 4,134 European ancestry controls	NA	19p13.3	C3	rs2230199-C	.19	5E-13		1.83	[1.56-2.14]	Affymetrix, Illumina [6036699] (imputed)	N
636	chr19	6718386	6718387	rs2230199	22705344	Sobrin L	2012-06-15	Ophthalmology	Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.	Age-related macular degeneration (choroidal neovascularisation)	1,775 European ancestry choroidal neovascularization cases, 4,134 European ancestry controls	4,515 European and unknown ancestry choroidal neovascularization cases, 15,240 European and unknown ancestry controls	19p13.3	C3	rs2230199-C	0.193	1E-12		1.61	[1.40-1.85]	Affymetrix, Illumina [6036699] (imputed)	N
636	chr19	6718386	6718387	rs2230199	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	19p13.3	C3	rs2230199-C	0.19	5E-29		1.53	[NR]	Affymetrix [6036699] (imputed)	N
636	chr19	6718386	6718387	rs2230199	20861866	Kopplin LJ	2010-09-23	Genes Immun	Genome-wide association identifies SKIV2L and MYRIP as protective factors for age-related macular degeneration.	Age-related macular degeneration	684 European ancestry cases, 188 European ancestry controls	1,896 European ancestry cases, 1,866 European ancestry controls	19p13.3	C3, R102G	rs2230199-C	NR	1E-8		1.44	[NR]	Affymetrix [> 361556] (imputed)	N
636	chr19	6718386	6718387	rs2230199	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	19p13.3	C3	rs2230199-?	NR	2E-8				Affymetrix [632932]	N
636	chr19	6718386	6718387	rs2230199	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	19p13.3	C3	rs2230199-C	0.163	1E-10		1.74	[1.47-2.06]	Illumina [~ 2500000] (imputed)	N
636	chr19	6722832	6722832	rs550946885	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	19p13.3		rs550946885-G	0.216512	7E-10		1.23		Affymetrix [15377238] (imputed)	N
636	chr19	6724339	6724340	rs163494	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	NR	rs163494-C	0.8053125	5E-10	(TNFRSF14, 11545_9_3)	0.18748476	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
636	chr19	6724339	6724340	rs163494	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	NR	rs163494-C	0.8053125	3E-17	(C3, 4480_59_2)	0.26415268	[0.2-0.33] unit increase	Illumina [> 1000000] (imputed)	N
636	chr19	6736606	6736607	rs4807897	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs4807897-G	0.01045	2E-8	(AOC3)	0.01878	NR unit increase	Illumina [1671387] (imputed)	N
636	chr19	6751292	6751293	rs1049232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.3		rs1049232-?	NR	3E-8				NR [~ 8900000] (imputed)	N
636	chr19	6765753	6765754	rs56036274	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	19p13.3	NR	rs56036274-?		9E-6		2.06	[1.50-2.85]	Illumina [539473] (imputed)	N
636	chr19	6801965	6801966	rs332426	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.3	VAV1	rs332426-A	0.1013	4E-10		0.03756262	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
636	chr19	6802570	6802571	rs8106212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.3		rs8106212-T	NR	2E-15		0.0856	[0.065-0.107] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
636	chr19	6802570	6802571	rs8106212	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.3		rs8106212-C	0.988	3E-9				Affymetrix [10369434] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.3	VAV1	rs8106212-T	0.011804	7E-40		0.13942106	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.3	VAV1	rs8106212-T	0.011805	7E-18		0.09078609	[0.07-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	VAV1	rs8106212-T	0.011807	6E-36		0.13186924	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8106212-T	0.0142559	3E-31				Affymetrix, Illumina [24588908] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.3	NR	rs8106212-T	0.012327	1E-27		0.095134	[0.078-0.112] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.3	NR	rs8106212-C	0.98618	2E-57				Affymetrix, Illumina [17210439] (imputed)	N
636	chr19	6802570	6802571	rs8106212	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.3	NR	rs8106212-C	0.98806	1E-52		0.139436	[0.12-0.16] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
636	chr19	6802570	6802571	rs8106212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.3	VAV1	rs8106212-T	0.0124	4E-19		0.1480016	[0.12-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr19	6802570	6802571	rs8106212	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.3	VAV1	rs8106212-T	0.0124	2E-12		0.1172424	[0.085-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
636	chr19	6802584	6802585	rs118146369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.3	VAV1	rs118146369-T	0.064062	1E-13		0.034134865	[0.025-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr19	6802584	6802585	rs118146369	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.3	VAV1	rs118146369-T	0.064068	5E-17		0.03874259	[0.03-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
636	chr19	6804092	6804093	rs201831100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.3	VAV1	rs201831100-C	0.0686	5E-9		0.04170017	[0.028-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr19	6857244	6857245	rs56100731	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.3	VAV1	rs56100731-C	0.92953125	6E-14	(VAV1, 5275_28_2)	0.36265817	[0.27-0.46] unit increase	Illumina [> 1000000] (imputed)	N
637	chr19	6859119	6859120	rs11666078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.3	VAV1	rs11666078-C	0.0856170000000001	4E-9		0.024142928	[0.016-0.032] unit increase	Affymetrix [93095623] (imputed)	N
637	chr19	6886858	6886859	rs10406773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.3	NR	rs10406773-C	0.04355	1E-9	(CTSS)	0.008296	NR unit increase	Illumina [1671387] (imputed)	N
637	chr19	6887735	6887736	rs3826782	23459936	Divaris K	2013-03-04	Hum Mol Genet	Exploring the genetic basis of chronic periodontitis: a genome-wide association study.	Periodontitis	4,504 European ancestry individuals	656 European ancestry and African American individuals	19p13.3	EMR1, VAV1	rs3826782-?	NR	8E-7	(Moderate CPd)	2.01	[1.52-2.65]	Affymetrix [2135236] (imputed)	N
637	chr19	6908894	6908895	rs147650109	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar II disorder	3,421 European ancestry cases, 31,358 European ancestry controls	NA	19p13.2	NR	rs147650109-G	0.026000000000000023	7E-7		1.5724013	[NR]	NR [9372253] (imputed)	N
637	chr19	6914443	6914444	rs62123082	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia not treated with cranial radiation	496 European ancestry individuals	527 individuals	19p13.2	NR	rs62123082-G	NR	3E-10		7.0	[4.84-9.16] unit increase	Illumina [> 9000000] (imputed)	N
638	chr19	6955368	6955369	rs111789436	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ADGRE4P	rs111789436-?	NR	2E-9	(male)	1.88419	[NR] unit decrease	Affymetrix [NR] (imputed)	N
638	chr19	6977907	6977908	rs114544292	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	19p13.2	NR	rs114544292-?	NR	9E-6		7.1289	[-0.74599-15.00379] unit decrease	Illumina [at least 560000] (imputed)	N
638	chr19	6992243	6992244	rs183353539	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	19p13.2	EMR4P	rs183353539-?	NR	8E-6		1.37	[0.76-1.98] unit decrease	Illumina [1075436] (imputed)	N
639	chr19	7101672	7101673	rs35207600	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	19p13.2		rs35207600-?	NR	2E-6		0.521	[0.31-0.73] unit decrease	Illumina [5082878] (imputed)	N
639	chr19	7114212	7114213	rs1864193	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	INSR	rs1864193-A	0.1416	5E-16		0.0226	[0.017-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
639	chr19	7125517	7125518	rs1799816	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	19p13.2		rs1799816-?	NR	9E-13		0.0901545	[0.066-0.114] unit decrease	NR [9800000] (imputed)	N
639	chr19	7125518	7125519	rs1799815	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	19p13.2	INSR	rs1799815-A	0.0616	9E-8		0.0327	[0.021-0.044] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
639	chr19	7125518	7125519	rs1799815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs1799815-A	NR	1E-14		0.0430953	[0.032-0.054] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7125518	7125519	rs1799815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs1799815-A	NR	2E-15		0.0442108	[0.033-0.055] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7125518	7125519	rs1799815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	INSR	rs1799815-A	NR	1E-12		0.0399119	[0.029-0.051] unit decrease	Affymetrix [321114] (imputed)	N
639	chr19	7125518	7125519	rs1799815	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.2	INSR	rs1799815-A	NR	2E-11		0.0379604	[0.027-0.049] unit decrease	Affymetrix [321169] (imputed)	N
639	chr19	7125518	7125519	rs1799815	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs1799815-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
639	chr19	7125518	7125519	rs1799815	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.2	NR	rs1799815-A	0.0662	1E-6		0.019	[0.011-0.027] unit decrease	NR [~ 27400000] (imputed)	N
639	chr19	7133934	7133935	rs10421414	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	INSR	rs10421414-?	NR	3E-9		0.018371746	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
639	chr19	7146281	7146282	rs7257359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs7257359-T	NR	2E-8		0.0350709	[0.023-0.047] unit increase	Affymetrix [323123] (imputed)	N
639	chr19	7152702	7152703	rs3745548	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	19p13.2	NR	rs3745548-T	0.0147	9E-13		0.4723	[0.34-0.6] unit increase	Illumina [~ 10600000] (imputed)	N
639	chr19	7161848	7161849	rs8106042	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19p13.2	INSR	rs8106042-G	0.281475	2E-12		0.020444	[0.015-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
639	chr19	7164561	7164562	rs12608977	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs12608977-T	NR	7E-11		0.0228679	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7164599	7164600	rs62124506	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs62124506-G	NR	2E-8		0.0215961	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7164599	7164600	rs62124506	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs62124506-G	NR	1E-8		0.0218046	[0.014-0.029] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7165138	7165138	rs146281182	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs146281182-AAAAAC	NR	7E-13		0.0275258	[0.02-0.035] unit increase	Affymetrix [323123] (imputed)	N
639	chr19	7166005	7166006	rs78301545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs78301545-C	NR	2E-8		0.0220917	[0.014-0.03] unit decrease	Affymetrix [321788] (imputed)	N
639	chr19	7166005	7166006	rs78301545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs78301545-C	NR	2E-11		0.0255016	[0.018-0.033] unit decrease	Affymetrix [321016] (imputed)	N
639	chr19	7166108	7166109	rs2059807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs2059807-A	NR	1E-9		0.0192012	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
639	chr19	7166108	7166109	rs2059807	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	19p13.2	INSR	rs2059807-G	0.301	1E-8		1.14	[NR]	Affymetrix [NR] (imputed)	N
639	chr19	7166137	7166138	rs3815902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs3815902-A	NR	9E-12		0.0247214	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
639	chr19	7166696	7166697	rs62124511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs62124511-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
639	chr19	7167714	7167715	rs1366235	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	19p13.2	INSR	rs1366235-G	NR	9E-6		0.323262	[0.18-0.47] unit increase	Illumina [5842835] (imputed)	N
639	chr19	7170504	7170505	rs7252268	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	19p13.2	NR	rs7252268-?		3E-6				Illumina [892589]	N
639	chr19	7172208	7172209	rs8113777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs8113777-T	NR	4E-8		0.021732	[0.014-0.029] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7178516	7178517	rs12609574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs12609574-T	NR	8E-15		0.0236452	[0.018-0.03] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7178516	7178517	rs12609574	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs12609574-T	NR	8E-15		0.0258269	[0.019-0.032] unit increase	Affymetrix [323123] (imputed)	N
639	chr19	7178526	7178527	rs10403229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs10403229-C	NR	4E-9		0.0191267	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs4325676-C	NR	8E-16		0.0234217	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs4325676-C	NR	4E-15		0.0228752	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs4325676-C	NR	2E-8		0.0177677	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs4325676-C	NR	1E-12		0.0214698	[0.016-0.027] unit increase	Affymetrix [321788] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs4325676-C	NR	3E-24		0.0294732	[0.024-0.035] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7182170	7182171	rs4325676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs4325676-C	NR	7E-17		0.0263938	[0.02-0.033] unit increase	Affymetrix [323123] (imputed)	N
639	chr19	7182178	7182179	rs76729345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs76729345-?	NR	3E-12				NR [~ 8900000] (imputed)	N
639	chr19	7182544	7182545	rs11672597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs11672597-T	0.782981	1E-10				Affymetrix, Illumina [22063850] (imputed)	N
639	chr19	7182544	7182545	rs11672597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.2	NR	rs11672597-T	0.779143	1E-11		0.01538	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
639	chr19	7183550	7183551	rs3786680	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs3786680-T	NR	9E-9		0.0280449	[0.018-0.038] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7183550	7183551	rs3786680	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs3786680-T	NR	1E-8		0.0278759	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7183550	7183551	rs3786680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs3786680-?	NR	3E-10				NR [~ 8900000] (imputed)	N
639	chr19	7183796	7183797	rs34840745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs34840745-T	NR	4E-8		0.0183274	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
639	chr19	7183796	7183797	rs34840745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs34840745-T	NR	4E-20		0.0295047	[0.023-0.036] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7183796	7183797	rs34840745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs34840745-?	NR	4E-39				NR [~ 8900000] (imputed)	N
639	chr19	7183925	7183926	rs34013042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs34013042-T	NR	2E-14		0.0246986	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7183925	7183926	rs34013042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs34013042-T	NR	1E-13		0.0239473	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
639	chr19	7184761	7184762	rs891088	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.2	INSR	rs891088-A	0.7355	7E-6	(EA,men)	0.026	[0.015-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
639	chr19	7184761	7184762	rs891088	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.2	INSR	rs891088-A	0.7355	3E-7	(EA, women)	0.0265	[0.016-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
639	chr19	7184761	7184762	rs891088	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.2	INSR	rs891088-A	0.7355	1E-10	(EA)	0.0259	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
639	chr19	7184761	7184762	rs891088	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.2	INSR	rs891088-A	0.738	7E-18		0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
639	chr19	7184761	7184762	rs891088	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.2	INSR	rs891088-A	0.74	2E-12		0.029	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
639	chr19	7184821	7184823	rs67787836	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	19p13.2	INSR	rs67787836-CAT	0.5047	1E-7		0.0469	[0.029-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
639	chr19	7184821	7184821	rs758567988	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	INSR	rs758567988-CAT	0.5043	4E-14		0.0139	[0.01-0.017] unit increase	Affymetrix [18391927] (imputed)	N
639	chr19	7185297	7185298	rs35211876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs35211876-A	NR	1E-10		0.0203556	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
639	chr19	7185305	7185306	rs11670892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs11670892-G	NR	4E-11		0.0272096	[0.019-0.035] unit increase	Affymetrix [321114] (imputed)	N
639	chr19	7185590	7185591	rs11670972	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	19p13.2	INSR	rs11670972-T	0.1766	3E-6		0.0493	[0.029-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
639	chr19	7187859	7187860	rs34194998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs34194998-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
639	chr19	7189374	7189375	rs2860183	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	INSR	rs2860183-T	0.377854	9E-12		0.014052	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
639	chr19	7190289	7190290	rs4804368	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	19p13.2	NR	rs4804368-?	NR	5E-7		1.0855407	[1.05-1.12]	Illumina [7437091] (imputed)	N
639	chr19	7192181	7192183	rs199817986	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs199817986-C	NR	7E-15		0.0256342	[0.019-0.032] unit increase	Affymetrix [323123] (imputed)	N
639	chr19	7192862	7192863	rs117185330	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	19p13.2	INSR	rs117185330-T	0.9685	9E-6		0.1166	[0.065-0.168] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
639	chr19	7193691	7193692	rs72998171	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	19p13.2	INSR, EMR4P, ACER1, CTD-3193O13.10, RP11-1137G4.4, CAMSAP3	rs72998171-C	0.03	6E-6	(EA)	0.27	0.15-0.39 unit decrease	Illumina [NR] (imputed)	N
639	chr19	7193978	7193978	rs10659627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs10659627-G	NR	8E-14		0.0233716	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
639	chr19	7193980	7193981	rs62111417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	INSR	rs62111417-T	0.712423	6E-10		0.015256089	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
639	chr19	7193980	7193980	rs376338027	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs376338027-G	NR	9E-14		0.0233342	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
639	chr19	7194435	7194435	rs112107715	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs112107715-G	0.226705	6E-9		0.0283489	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
639	chr19	7196564	7196565	rs2115386	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	19p13.2	INSR, LOC100131165, LOC100128567	rs2115386-C	0.55	3E-6		1.12	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	2E-9		0.0263318	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	7E-9		0.0255173	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	2E-8		0.0246619	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	1E-8		0.0251975	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	2E-8		0.0248715	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289421	2E-8		0.0247064	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
639	chr19	7197332	7197332	rs59460120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs59460120-A	0.289132	5E-10		0.026521	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
639	chr19	7197879	7197880	rs66921136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs66921136-T	0.288156	5E-9		0.0258846	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
639	chr19	7197930	7197931	rs553564605	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	19p13.2		rs553564605-T	0.718148	3E-8		0.0250408	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
639	chr19	7199802	7199803	rs1035942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs1035942-G	0.715612	4E-10				Affymetrix, Illumina [24246363] (imputed)	N
639	chr19	7199802	7199803	rs1035942	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.2	NR	rs1035942-A	0.2746	2E-12		0.0141	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
639	chr19	7199802	7199803	rs1035942	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	19p13.2	INSR	rs1035942-A	0.27	1E-7		0.029	[0.017-0.041] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
639	chr19	7199938	7199939	rs1035941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs1035941-A	NR	5E-11		0.020657	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
639	chr19	7199938	7199939	rs1035941	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	19p13.2	INSR	rs1035941-A	0.267	5E-8	(EA)	0.023571428	[0.015-0.032] unit increase	Illumina [1986983] (imputed)	N
639	chr19	7199977	7199978	rs1035940	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19p13.2	NR	rs1035940-C	0.28	1E-25		0.0212	[0.017-0.025] unit increase	NR [NR]	N
639	chr19	7199977	7199978	rs1035940	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs1035940-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
639	chr19	7199977	7199978	rs1035940	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.2	NA	rs1035940-C	0.2762	1E-9		0.012	[0.0081-0.0159] unit increase	NR [~ 27400000] (imputed)	N
639	chr19	7199977	7199978	rs1035940	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.2	NR	rs1035940-C	0.2762	1E-9		0.012	[0.0081-0.0159] unit increase	NR [~ 27400000] (imputed)	N
639	chr19	7200557	7200558	rs8106700	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	19p13.2	INSR	rs8106700-A	0.2894	3E-9		0.0044	[0.003-0.0058] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
639	chr19	7202431	7202432	rs55707014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs55707014-C	NR	1E-8		0.0267927	[0.018-0.036] unit increase	Affymetrix [321788] (imputed)	N
639	chr19	7204393	7204394	rs2042901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19p13.2	NR	rs2042901-G	NR	8E-19		0.024	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr19	7204393	7204394	rs2042901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs2042901-G	NR	3E-16		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
639	chr19	7204393	7204394	rs2042901	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.2	NR	rs2042901-G	NR	1E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
639	chr19	7206072	7206073	rs12459488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs12459488-G	NR	1E-13		0.0252141	[0.019-0.032] unit decrease	Affymetrix [323123] (imputed)	N
639	chr19	7207474	7207475	rs8105787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.2		rs8105787-T	NR	1E-9		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
639	chr19	7207474	7207475	rs8105787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs8105787-C	NR	6E-12		0.0230734	[0.016-0.03] unit decrease	Affymetrix [321788] (imputed)	N
639	chr19	7207659	7207660	rs8106071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs8106071-G	NR	2E-11		0.0200918	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
639	chr19	7207730	7207731	rs12973230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19p13.2	INSR	rs12973230-T	NR	5E-8		0.0210959	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
639	chr19	7207730	7207731	rs12973230	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs12973230-T	NR	5E-15		0.0290527	[0.022-0.036] unit increase	Affymetrix [323123] (imputed)	N
640	chr19	7210568	7210569	rs62112761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.2		rs62112761-G	NR	2E-10		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
640	chr19	7210568	7210569	rs62112761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.2		rs62112761-G	NR	1E-29		0.0152	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
640	chr19	7210568	7210569	rs62112761	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs62112761-G	NR	1E-8		0.0187488	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
640	chr19	7210809	7210810	rs2042904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs2042904-A	NR	4E-11		0.0190795	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
640	chr19	7210809	7210810	rs2042904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs2042904-A	NR	2E-10		0.0184668	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
640	chr19	7210809	7210810	rs2042904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs2042904-A	NR	3E-8		0.0175691	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
640	chr19	7210809	7210810	rs2042904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs2042904-A	NR	2E-10		0.0200609	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
640	chr19	7211310	7211311	rs10405423	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.2		rs10405423-A	NR	2E-26		0.0216	[0.018-0.026] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
640	chr19	7211310	7211311	rs10405423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs10405423-C	NR	3E-10		0.0189956	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
640	chr19	7211310	7211311	rs10405423	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19p13.2	INSR	rs10405423-A	0.7	1E-18		0.0325	[0.025-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
640	chr19	7211310	7211311	rs10405423	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19p13.2	INSR	rs10405423-A	0.6625	1E-20		0.03865	[0.031-0.047] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
640	chr19	7211310	7211311	rs10405423	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19p13.2	NR	rs10405423-A	0.7092	3E-8	(men)	0.0338	[0.022-0.046] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
640	chr19	7211310	7211311	rs10405423	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19p13.2	NR	rs10405423-A	0.6976	6E-9	(women)	0.0313	[0.021-0.042] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
640	chr19	7211310	7211311	rs10405423	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	19p13.2	INSR	rs10405423-A	0.657829922310883	2E-6		0.0027017	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
640	chr19	7211969	7211970	rs35931207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19p13.2		rs35931207-T	NR	3E-8		0.0321	[0.021-0.043] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
640	chr19	7214281	7214282	rs12971499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs12971499-C	NR	5E-9		0.0184257	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
640	chr19	7217600	7217601	rs1975031	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	19p13.2	INSR	rs1975031-G	NR	8E-6		0.122327	[0.068-0.176] unit increase	Illumina [7433384] (imputed)	N
640	chr19	7218634	7218635	rs112630404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs112630404-A	NR	4E-8		0.0197157	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
640	chr19	7218634	7218635	rs112630404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs112630404-A	NR	1E-9		0.0226006	[0.015-0.03] unit decrease	Affymetrix [321788] (imputed)	N
640	chr19	7218921	7218922	rs77017252	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.2	NR	rs77017252-T	0.756021	5E-12		0.0104464	[0.0075-0.0134] unit increase	Affymetrix [16578495] (imputed)	N
640	chr19	7220012	7220013	rs62112763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs62112763-G	NR	1E-10		0.0184847	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
640	chr19	7220012	7220013	rs62112763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs62112763-G	NR	2E-10		0.0182767	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
640	chr19	7220012	7220013	rs62112763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs62112763-G	NR	2E-8		0.0167414	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
640	chr19	7220012	7220013	rs62112763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs62112763-G	NR	6E-14		0.0214661	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
640	chr19	7220012	7220013	rs62112763	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	INSR	rs62112763-C	0.561089	2E-13		0.0141168	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
640	chr19	7220012	7220013	rs62112763	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	INSR	rs62112763-C	0.6009	3E-14		0.0221	[0.016-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
640	chr19	7220413	7220414	rs2017199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs2017199-A	NR	3E-8		0.0187684	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
640	chr19	7220413	7220414	rs2017199	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs2017199-A	NR	3E-10		0.021175	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
640	chr19	7220595	7220596	rs3890483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	INSR	rs3890483-T	0.441194	3E-12		0.015665425	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
640	chr19	7220595	7220596	rs3890483	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	INSR	rs3890483-G	0.559781	2E-22		0.0195773	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
640	chr19	7222233	7222234	rs10401485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	INSR	rs10401485-T	NR	5E-9		0.0183854	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	INSR	rs4804411-C	NR	1E-6				Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	INSR	rs4804411-C	NR	1E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	INSR	rs4804411-C	NR	8E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	INSR	rs4804411-C	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	INSR	rs4804411-C	NR	2E-6	(EA)	0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	INSR	rs4804411-C	NR	9E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	INSR	rs4804411-C	NR	7E-6				Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	INSR	rs4804411-C	NR	3E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	INSR	rs4804411-C	NR	8E-6		0.003	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222376	7222377	rs4804411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	INSR	rs4804411-C	NR	7E-7	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
640	chr19	7222654	7222655	rs4804413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.2		rs4804413-T	0.404898	2E-14		0.0157056	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
640	chr19	7222654	7222655	rs4804413	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	INSR	rs4804413-?	NR	2E-17		0.024705436	[0.019-0.03] unit decrease	Illumina [27896057] (imputed)	N
640	chr19	7222831	7222832	rs7508679	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	19p13.2	INSR	rs7508679-?	NR	1E-7		1.0695187	[1.04-1.10]	Illumina [13676411] (imputed)	N
640	chr19	7223784	7223785	rs4804414	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19p13.2	INSR	rs4804414-C	0.57218	1E-9		0.00243081	[0.0017-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
640	chr19	7223847	7223848	rs4804416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19p13.2		rs4804416-G	NR	2E-15		0.1907	[0.14-0.24] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
640	chr19	7223847	7223848	rs4804416	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	19p13.2	INSR	rs4804416-G	0.441015214193157	2E-32		0.0548	[0.046-0.064] SD increase	Illumina [22400000] (imputed)	N
640	chr19	7223847	7223848	rs4804416	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs4804416-T	NR	4E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
640	chr19	7223847	7223848	rs4804416	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs4804416-T	0.575	4E-7	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
640	chr19	7223847	7223848	rs4804416	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	19p13.2	INSR	rs4804416-T	0.569	3E-10	(TSH)	0.057	[0.039-0.075] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
640	chr19	7223847	7223848	rs4804416	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	19p13.2	INSR	rs4804416-T	0.569	2E-6	(TSH - Females)	0.058	[0.034-0.082] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
640	chr19	7223847	7223848	rs4804416	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	19p13.2	INSR	rs4804416-G	0.423	5E-6		1.125	[1.07-1.18]	Illumina [870065]	N
640	chr19	7223972	7223975	rs10533917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19p13.2		rs10533917-A	NR	3E-18		0.0204	[0.016-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
640	chr19	7223973	7223976	rs761269475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19p13.2		rs761269475-T	NR	7E-13		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
640	chr19	7223973	7223976	rs761269475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19p13.2		rs761269475-T	NR	6E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
640	chr19	7223973	7223976	rs761269475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	INSR	rs761269475-T	0.420798	7E-13		0.016343115	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
640	chr19	7223973	7223976	rs761269475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	INSR	rs761269475-T	0.420794	8E-12		0.015591965	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
640	chr19	7223973	7223976	rs761269475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	INSR	rs761269475-T	0.420879	5E-13		0.01631421	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
640	chr19	7224349	7224350	rs10410204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs10410204-C	NR	2E-13		0.0229957	[0.017-0.029] unit increase	Affymetrix [323123] (imputed)	N
640	chr19	7224430	7224431	rs7248104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19p13.2		rs7248104-A	NR	2E-8		0.0562	[0.037-0.076] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
640	chr19	7224430	7224431	rs7248104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19p13.2	NR	rs7248104-G	0.58492	1E-10		0.0127354	[0.0088-0.0167] unit increase	Affymetrix [16583148] (imputed)	N
640	chr19	7224430	7224431	rs7248104	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19p13.2	NR	rs7248104-G	0.58436	5E-10		0.0156963	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
640	chr19	7224430	7224431	rs7248104	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	19p13.2		rs7248104-A	0.389	2E-6		0.0113	[0.0066-0.016] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
640	chr19	7224430	7224431	rs7248104	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7248104-G	NR	1E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
640	chr19	7224430	7224431	rs7248104	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7248104-G	0.587	5E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
640	chr19	7224430	7224431	rs7248104	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	19p13.2	INSR	rs7248104-A	0.417	6E-10	(Trans-ethnic initial)	0.0222	[0.016-0.029] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
640	chr19	7224430	7224431	rs7248104	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.2	INSR	rs7248104-A	0.395	3E-9		0.27	[0.17-0.37] unit decrease	Illumina [247039]	N
640	chr19	7224430	7224431	rs7248104	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Pulse pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.2	INSR	rs7248104-A	0.395	3E-10		0.2	[0.14-0.26] unit decrease	Illumina [247039]	N
640	chr19	7224430	7224431	rs7248104	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	INSR	rs7248104-A	0.42	5E-10		0.022	[NR] mg/dL decrease	NR [NR] (imputed)	N
640	chr19	7226143	7226144	rs4804418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.2	INSR	rs4804418-T	NR	5E-10		0.0215242	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
640	chr19	7226143	7226144	rs4804418	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	INSR	rs4804418-T	NR	1E-9		0.0202513	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
640	chr19	7226449	7226450	rs11669336	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19p13.2	NR	rs11669336-C	0.68	2E-14		0.0152	[0.011-0.019] unit increase	NR [NR]	N
640	chr19	7230437	7230438	rs10416429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.2	NR	rs10416429-C	NR	2E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
640	chr19	7235145	7235146	rs17175860	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.2	NR	rs17175860-G	0.1919	3E-14		0.0445	[0.033-0.056] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
640	chr19	7236625	7236626	rs10221473	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.2	NR	rs10221473-G	0.542333	7E-13		0.00657655	[0.0049-0.0082] unit increase	Affymetrix [16582909] (imputed)	N
640	chr19	7236625	7236626	rs10221473	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.2	NR	rs10221473-G	0.542333	1E-9		0.00606846	[0.0042-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
640	chr19	7240775	7240776	rs4804433	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19p13.2		rs4804433-?	NR	2E-9				NR [~ 8900000] (imputed)	N
640	chr19	7240847	7240848	rs75253922	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.2	NR	rs75253922-C	0.1846	8E-14		0.0402	[0.03-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
640	chr19	7240847	7240848	rs75253922	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.2	INSR	rs75253922-C	0.1909	3E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
640	chr19	7242260	7242261	rs56149994	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	INSR	rs56149994-T	0.2862	1E-13		0.0229	[0.017-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
640	chr19	7243083	7243084	rs12463278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	INSR	rs12463278-A	NR	2E-10		0.0242682	[0.017-0.032] unit decrease	Affymetrix [323123] (imputed)	N
640	chr19	7243083	7243084	rs12463278	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.2	INSR	rs12463278-A	0.2051	2E-13		0.242	[0.18-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
640	chr19	7252755	7252756	rs4247374	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	19p13.2	INSR	rs4247374-?	NR	4E-21				Affymetrix, Illumina [18800000] (imputed)	N
640	chr19	7252755	7252756	rs4247374	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	19p13.2	INSR	rs4247374-?		6E-19				Affymetrix, Illumina [18800000] (imputed)	N
640	chr19	7252755	7252756	rs4247374	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.2	INSR	rs4247374-T	0.134	3E-6	(EA, initial)	0.566	[0.33-0.8] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
640	chr19	7252755	7252756	rs4247374	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.2	INSR	rs4247374-T	0.134	6E-7	(EA, initial)	0.367	[0.22-0.51] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
640	chr19	7252755	7252756	rs4247374	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	19p13.2	INSR	rs4247374-T	0.143	1E-18		0.5933	[0.46-0.73] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
640	chr19	7252755	7252756	rs4247374	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	19p13.2	INSR	rs4247374-T	0.143	2E-22		0.3852	[0.31-0.46] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
640	chr19	7253183	7253184	rs34328549	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	19p13.2	INSR	rs34328549-?	NR	5E-15		0.07281571	NR unit increase	Affymetrix [464137]	N
640	chr19	7255700	7255701	rs36047283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.2		rs36047283-G	NR	4E-20		0.0296	[0.023-0.036] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
640	chr19	7255700	7255701	rs36047283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	19p13.2		rs36047283-G	NR	7E-12		0.0856	[0.061-0.11] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
640	chr19	7255700	7255701	rs36047283	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	19p13.2	INSR	rs36047283-G	0.125448	7E-12		0.085640155	[0.061-0.11] unit decrease	Affymetrix [7288503] (imputed)	N
640	chr19	7255700	7255701	rs36047283	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.2	intergenic	rs36047283-G	0.111	3E-9	(EA, initial)	0.822	[0.55-1.09] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
640	chr19	7255700	7255701	rs36047283	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.2	intergenic	rs36047283-G	0.111	3E-26		0.801	[0.65-0.95] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
640	chr19	7256242	7256243	rs75392157	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.2	INSR	rs75392157-T	0.1138	1E-25		0.5716	[0.46-0.68] mmHg decrease	Affymetrix [NR] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.2		rs12978472-G	NR	5E-32		0.0397	[0.033-0.046] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	19p13.2		rs12978472-G	NR	9E-18		0.1018	[0.078-0.125] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	19p13.2		rs12978472-G	NR	3E-19		0.1089	[0.085-0.133] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19p13.2		rs12978472-G	NR	1E-22		0.0894	[0.072-0.107] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.2		rs12978472-G	NR	1E-31		0.04	[0.033-0.047] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
640	chr19	7257989	7257990	rs12978472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.2		rs12978472-G	NR	1E-23		0.0357	[0.029-0.043] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
640	chr19	7257989	7257990	rs12978472	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	19p13.2	INSR	rs12978472-G	0.127718	9E-18		0.10179751	[0.079-0.125] unit decrease	Affymetrix [7288503] (imputed)	N
640	chr19	7257989	7257990	rs12978472	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	19p13.2	INSR	rs12978472-G	0.127677	3E-19		0.10885811	[0.085-0.133] unit decrease	Affymetrix [7288503] (imputed)	N
640	chr19	7257989	7257990	rs12978472	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.2	INSR	rs12978472-G	0.127092	1E-22		0.089384265	[0.072-0.107] unit decrease	Affymetrix [7288503] (imputed)	N
640	chr19	7257989	7257990	rs12978472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.2		rs12978472-?	NR	1E-58				NR [~ 8900000] (imputed)	N
640	chr19	7257989	7257990	rs12978472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs12978472-?	NR	3E-43				NR [~ 8900000] (imputed)	N
640	chr19	7257989	7257990	rs12978472	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	19p13.2	INSR	rs12978472-C	0.89	2E-34	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
640	chr19	7257989	7257990	rs12978472	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	19p13.2	INSR	rs12978472-C	0.89	2E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
640	chr19	7257989	7257990	rs12978472	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	19p13.2	INSR	rs12978472-C	0.89	4E-29	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
640	chr19	7258404	7258405	rs11671314	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	19p13.2	INSR	rs11671314-C	0.13	3E-8		0.452	[0.30-0.61] unit increase	Affymetrix [~ 9800000] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.2	INSR	rs10427021-T		6E-8	(EA)	0.487	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.2	INSR	rs10427021-T		2E-7		0.423	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	INSR	rs10427021-T		1E-18		0.512	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.2	INSR	rs10427021-T		9E-9		0.305	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.2	INSR	rs10427021-T		3E-9	(EA)	0.347	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7259345	7259346	rs10427021	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	INSR	rs10427021-T		5E-22		0.343	unit increase	Affymetrix [at least 2696785] (imputed)	N
640	chr19	7264548	7264549	rs67731056	27142222	White MJ	2016-05-03	Immunogenetics	Novel genetic risk factors for asthma in African American children: Precision Medicine and the SAGE II Study.	Asthma (childhood onset)	812 African American child cases, 415 African American child controls	NA	19p13.2	INSR	rs67731056-C	0.14	7E-6		1.88	[1.43-2.48]	Affymetrix [797128]	N
640	chr19	7293118	7293119	rs8101064	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19p13.2	INSR	rs8101064-T	0.128	4E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
640	chr19	7326872	7326873	rs35936082	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals		NR	rs35936082-?	NR	3E-37		0.43	[0.35-0.51] unit increase	Illumina [at least 830937] (imputed)	N
640	chr19	7333245	7333246	rs34501900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA			rs34501900-A	NR	9E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
641	chr19	7406065	7406066	rs4804517	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	19p13.2	CTB-133G6.1	rs4804517-G	0.334256	4E-11		0.05616307	[0.039-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
641	chr19	7406065	7406066	rs4804517	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.2	CTB-133G6.1	rs4804517-G	0.333729	8E-10		0.039267242	[0.027-0.052] unit decrease	Affymetrix [7288503] (imputed)	N
641	chr19	7406065	7406066	rs4804517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.2		rs4804517-?	NR	3E-11				NR [~ 8900000] (imputed)	N
641	chr19	7406065	7406066	rs4804517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs4804517-?	NR	3E-14				NR [~ 8900000] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.2		rs62111672-A	NR	6E-19		0.0573	[0.045-0.07] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.2		rs62111672-A	NR	1E-9		0.0289	[0.019-0.038] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.2		rs62111672-G	0.959	9E-12				Affymetrix [10369434] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.2		rs62111672-G	0.959	4E-9				Affymetrix [10369434] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.2		rs62111672-G	0.959	1E-9				Affymetrix [10369434] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.2		rs62111672-G	0.959	4E-12				Affymetrix [10369434] (imputed)	N
641	chr19	7415063	7415064	rs62111672	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19p13.2		rs62111672-G	0.959	6E-9				Affymetrix [10369434] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.041078	2E-16		0.04948188	[0.038-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.041077	5E-18		0.052010447	[0.04-0.064] unit increase	Affymetrix [93095623] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.041073	3E-28		0.06604225	[0.054-0.078] unit increase	Affymetrix [93095623] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.041088	1E-14		0.046480168	[0.035-0.058] unit increase	Affymetrix [93095623] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs62111672-A	0.0408796	4E-28				Affymetrix, Illumina [23472807] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.2	NR	rs62111672-A	0.041907	5E-31		0.062856	[0.052-0.073] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs62111672-A	0.0410572	5E-11				Affymetrix, Illumina [19872809] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.2	NR	rs62111672-A	0.041967	1E-13		0.04051	[0.03-0.051] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
641	chr19	7415063	7415064	rs62111672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.2	NR	rs62111672-A	0.041948	7E-10		0.034912	[0.024-0.046] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
641	chr19	7415063	7415064	rs62111672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.2		rs62111672-?	NR	9E-17				NR [~ 8900000] (imputed)	N
641	chr19	7415063	7415064	rs62111672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.0458	3E-9		0.05792041	[0.039-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
641	chr19	7415063	7415064	rs62111672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.2	CTB-133G6.1	rs62111672-A	0.0458	3E-14		0.07481761	[0.056-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
641	chr19	7424527	7424528	rs6603109	22445761	Kurose K	2012-03-23	Psychiatry Res	Genome-wide association study of SSRI/SNRI-induced sexual dysfunction in a Japanese cohort with major depression.	Sexual dysfunction (SSRI/SNRI-related)	201 Japanese ancestry individuals	NA	19p13.2	AC119396.1	rs6603109-A	0.017	2E-6		5.13	[2.22-11.76]	Affymetrix [186320]	N
641	chr19	7452871	7452872	rs62111681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.2	CTD-2207O23.3	rs62111681-T	0.0402169999999999	2E-11		0.040542014	[0.029-0.052] unit increase	Affymetrix [93095623] (imputed)	N
641	chr19	7468488	7468489	rs4804586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19p13.2		rs4804586-G	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
642	chr19	7477318	7477319	rs11879917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.2		rs11879917-?	NR	4E-10				NR [~ 8900000] (imputed)	N
642	chr19	7529414	7529415	rs2287919	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	PEX11G	rs2287919-?	NR	6E-6	(2-hydroxyglutaric acid)	0.25242162	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	8E-9	(130 ms)	0.0313667	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	8E-11	(82 ms)	0.0366889	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	7E-11	(110 ms)	0.0365806	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	6E-9	(88 ms)	0.0329097	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	6E-12	(72 ms)	0.0388385	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	4E-8	(90 ms)	0.0311612	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	4E-8	(64 ms)	0.0306155	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	3E-9	(86 ms)	0.0333206	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	3E-9	(100 ms)	0.0324716	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	3E-8	(132 ms)	0.0296831	[0.018-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	3E-10	(84 ms)	0.0355107	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	3E-10	(68 ms)	0.034965	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	2E-9	(108 ms)	0.0336247	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	2E-8	(128 ms)	0.0301003	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	2E-8	(112 ms)	0.0311287	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	2E-13	(70 ms)	0.0426563	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	2E-10	(62 ms)	0.0363406	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	1E-9	(80 ms)	0.0344536	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	1E-8	(78 ms)	0.0331801	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19p13.2	C19orf45, ZNF358, MCOLN1	rs113394178-C	0.396592	1E-10	(60 ms)	0.0368627	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		19p13.2	NR	rs113394178-A	0.60918	4E-7		0.055921	[0.034-0.078] unit decrease	Affymetrix [14134301] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		19p13.2	NR	rs113394178-A	0.60918	2E-11		0.074296	[0.053-0.096] unit decrease	Affymetrix [14134301] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		19p13.2	NR	rs113394178-A	0.60918	7E-11		0.071907	[0.05-0.094] unit decrease	Affymetrix [14134301] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		19p13.2	NR	rs113394178-A	0.60918	2E-9		0.067119	[0.045-0.089] unit decrease	Affymetrix [14134301] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	19p13.2	ZNF358	rs113394178-A	0.6	2E-8		0.46	[0.3-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
642	chr19	7581243	7581244	rs113394178	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	19p13.2	ZNF358	rs113394178-A	0.6117	3E-6		0.4073	[0.24-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
642	chr19	7581624	7581625	rs73488486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19p13.2		rs73488486-?	NR	4E-8				NR [~ 8900000] (imputed)	N
642	chr19	7589060	7589061	rs115208233	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	19p13.2	MCOLN1	rs115208233-G	0.053	3E-9	(AA)	0.463	[NR] unit increase	Illumina [up to 10295719] (imputed)	N
642	chr19	7589060	7589061	rs115208233	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	19p13.2	MCOLN1	rs115208233-?	NR	1E-8				Illumina [up to 10295719] (imputed)	N
642	chr19	7590844	7590845	rs28377676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.2	MCOLN1	rs28377676-A	0.202541	3E-12		0.019701052	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
642	chr19	7590844	7590845	rs28377676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs28377676-G	0.801295	6E-13				Affymetrix, Illumina [17210439] (imputed)	N
643	chr19	7617733	7617733	rs202176122	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	19p13.2		rs202176122-TGATGG	NR	3E-6		3.23	[1.92-5.4]	Illumina [10838245] (imputed)	N
643	chr19	7619177	7619178	rs201458284	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	19p13.2	NR	rs201458284-?	NR	4E-9	(RETN)	1.82064	[1.21-2.43] unit increase	Illumina [11901634] (imputed)	N
643	chr19	7661889	7661890	rs72992520	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.2	NR	rs72992520-C	0.04704	2E-8	(KRT8)	2.402	NR unit increase	Illumina [1671387] (imputed)	N
643	chr19	7661889	7661890	rs72992520	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.2	NR	rs72992520-C	0.04704	2E-8	(KRT18)	1.413	NR unit increase	Illumina [1671387] (imputed)	N
643	chr19	7684170	7684171	rs4134872	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	19p13.2	NR	rs4134872-?	NR	3E-6	(AA)	15.74	[14.17-17.31]	Illumina [905956]	N
643	chr19	7692075	7692076	rs4134826	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs4134826-T	0.86	3E-14		0.0893	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
643	chr19	7699346	7699347	rs4804217	29884837	Reyes-Gibby CC	2018-06-08	Sci Rep	Genome-wide association study identifies genes associated with neuropathy in patients with head and neck cancer.	Neuropathic pain in head and neck cancer	130 European ancestry cases, 913 European ancestry controls	NA	19p13.2	PCP2	rs4804217-?	0.62	3E-9		1.724138	[1.45-2.08]	Illumina [714494]	N
643	chr19	7726337	7726338	rs144580419	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	19p13.2	NR	rs144580419-?	NR	5E-8	(Blautia_coccoides)	0.243752	[0.16-0.33] unit increase	Illumina [5293637] (imputed)	N
644	chr19	7733574	7733575	rs34861192	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs34861192-A	0.017	3E-164		1.2639	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
644	chr19	7733675	7733676	rs34124816	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	RETN	rs34124816-C	0.038	4E-21	(Resistin, RETN.3046.31.1)	0.61	[0.49-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr19	7733854	7733855	rs3219175	32876488	Meeks KAC	2020-09-02	Circ Genom Precis Med	The Genetics of Circulating Resistin Level, A Biomarker for Cardiovascular Diseases, Is Informed by Mendelian Randomization and the Unique Characteristics of African Genomes.	Resistin levels	3,754 Sub-Saharan African ancestry individuals, 1,867 African American individuals	NA	19p13.2	RETN	rs3219175-?		1E-188				Affymetrix [NR] (imputed)	N
644	chr19	7733854	7733855	rs3219175	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19p13.2	NR	rs3219175-?	NR	6E-39	(Resistin)			Illumina [514227]	N
644	chr19	7733854	7733855	rs3219175	27664181	Kawamura R	2016-09-23	Physiol Genomics	Genome-wide association study of plasma resistin levels identified rs1423096 and rs10401670 as possible functional variants in the Japanese population.	Resistin levels	448 Japanese ancestry individuals	4,059 Japanese ancestry individuals	19p13.2	RETN	rs3219175-A	NR	2E-858		7.53	[7.29-7.77] unit increase	Illumina [5708071] (imputed)	N
644	chr19	7734510	7734511	rs3745367	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs3745367-A	0.24	3E-28		0.109	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
644	chr19	7734510	7734511	rs3745367	22843503	Qi Q	2012-07-26	Hum Mol Genet	Genome-wide association analysis identifies TYW3/CRYZ and NDST4 loci associated with circulating resistin levels.	Resistin levels	3,248 European ancestry individuals	659 European ancestry individuals	19p13.2	RETN	rs3745367-A	0.23	3E-6		0.04	[0.020-0.060] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
644	chr19	7736798	7736799	rs1477341	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs1477341-T	0.553	1E-13	(Resistin, RETN.3046.31.1)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr19	7739176	7739177	rs1423096	27664181	Kawamura R	2016-09-23	Physiol Genomics	Genome-wide association study of plasma resistin levels identified rs1423096 and rs10401670 as possible functional variants in the Japanese population.	Resistin levels	448 Japanese ancestry individuals	4,059 Japanese ancestry individuals	19p13.2	RETN	rs1423096-T	NR	2E-209		4.79	[4.5-5.08] unit increase	Illumina [5708071] (imputed)	N
644	chr19	7739176	7739177	rs1423096	24123702	Chung CM	2014-03-03	Diabetes Metab Res Rev	Common quantitative trait locus downstream of RETN gene identified by genome-wide association study is associated with risk of type 2 diabetes mellitus in Han Chinese: a Mendelian randomization effect.	Resistin levels	382 Han Chinese ancestry indiviudals	559 Han Chinese ancestry indiviudals	19p13.2	RETN	rs1423096-G	0.78	1E-7		0.322	[0.25-0.40] ug/mL increase	Illumina [NR]	N
644	chr19	7742801	7742802	rs10401670	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs10401670-T	0.43	2E-64		0.1597	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
644	chr19	7758262	7758263	rs12973524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	FCER2	rs12973524-A	0.484	6E-36	(Low affinity immunoglobulin epsilon Fc receptor, FCER2.3291.30.2)	0.31	[0.27-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr19	7759675	7759676	rs11260013	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	FCER2	rs11260013-T	0.4874245	4E-14	(Low affinity immunoglobulin epsilon Fc receptor)	0.3277	[0.24-0.41] unit decrease	Affymetrix [509946]	N
644	chr19	7761811	7761812	rs2277989	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER2	5,364 Icelandic ancestry individuals	NA	19p13.2		rs2277989-G	0.4507	6E-36		0.237651	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
644	chr19	7761811	7761812	rs2277989	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	FCER2	rs2277989-G	0.445625	2E-25	(FCER2, 3291_30_2)	0.26189443	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr19	7763877	7763878	rs12981234	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	19p13.2	NR	rs12981234-?		4E-6		2.33	[NR]	Illumina [NR] (imputed)	N
644	chr19	7765392	7765396	rs113893384	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs113893384-C	0.706	5E-19	(Low affinity immunoglobulin epsilon Fc receptor, FCER2.3291.30.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr19	7766273	7766274	rs1990975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FCER2	5,364 Icelandic ancestry individuals	NA	19p13.2		rs1990975-T	0.2779	2E-33		0.250204	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
644	chr19	7766273	7766274	rs1990975	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19p13.2	NR	rs1990975-A	NR	9E-17	(Low affinity immunoglobulin epsilon Fc receptor)			Illumina [514227]	N
644	chr19	7766816	7766817	rs186640425	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.2	FCER2	rs186640425-G	0.999	2E-6	(AA)	1.619	NR unit increase	Illumina [NR] (imputed)	N
644	chr19	7772172	7772173	rs4804774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	NR	rs4804774-C	0.238887	6E-9		0.0155537715	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7772172	7772173	rs4804774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.2		rs4804774-C	0.23887	2E-13		0.01981649	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7772172	7772173	rs4804774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.2		rs4804774-C	0.238882	4E-11		0.017739698	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr19	7773874	7773875	rs187229201	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.2	Intergenic	rs187229201-G	0.999	1E-6	(AA)	1.614	NR unit increase	Illumina [NR] (imputed)	N
644	chr19	7781677	7781677	rs145827860	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	CD209	rs145827860-TTCTGGGGGC	0.213	1E-43	(CD209 antigen, CD209.3029.52.2)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
644	chr19	7786177	7786178	rs62126592	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	CD209	rs62126592-G	0.26625	2E-35	(CD209, 3029_52_2)	0.35398522	[0.3-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
644	chr19	7788090	7788091	rs8106657	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	CLEC4G	rs8106657-C	0.2567839	4E-13	(EA, CD209 antigen)	0.3616	[0.27-0.46] unit decrease	Affymetrix [509946]	N
644	chr19	7789795	7789796	rs10422720	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD209	5,368 Icelandic ancestry individuals	NA	19p13.2		rs10422720-C	0.2351	1E-52		0.338802	[0.3-0.38] unit decrease	Illumina [7506463] (imputed)	N
644	chr19	7792242	7792243	rs146861169	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.2	Intergenic	rs146861169-T	0.999	2E-6	(AA)	1.465	NR unit increase	Illumina [NR] (imputed)	N
644	chr19	7796549	7796550	rs142080098	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.2	CLEC4G	rs142080098-C	0.999	2E-6	(AA)	1.455	NR unit increase	Illumina [NR] (imputed)	N
644	chr19	7800465	7800466	rs144975701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.2	Intergenic	rs144975701-T	0.999	2E-6	(AA)	1.451	NR unit increase	Illumina [NR] (imputed)	N
644	chr19	7803095	7803096	rs7248227	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD209	5,368 Icelandic ancestry individuals	NA	19p13.2		rs7248227-C	0.4423	1E-48		0.27649	[0.24-0.31] unit decrease	Illumina [7506463] (imputed)	N
644	chr19	7827829	7827830	rs571497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.2		rs571497-A	NR	2E-20		0.0311	[0.025-0.038] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
644	chr19	7827829	7827830	rs571497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.2		rs571497-A	NR	3E-23		0.0332	[0.027-0.04] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
644	chr19	7827829	7827830	rs571497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.2		rs571497-A	NR	1E-12		0.0231	[0.017-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
644	chr19	7827829	7827830	rs571497	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19p13.2		rs571497-G	0.847	2E-13				Affymetrix [10369434] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	CLEC4M	rs571497-A	0.15308	8E-25		0.03241354	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.2	CLEC4M	rs571497-A	0.153103	2E-24		0.032251976	[0.026-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.2	CLEC4M	rs571497-A	0.153141	5E-19		0.027720504	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	CLEC4M	rs571497-A	0.153101	3E-15		0.024510223	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs571497-A	0.157579	1E-42				Affymetrix, Illumina [24649327] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.2	NR	rs571497-A	0.154843	6E-45		0.036357	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs571497-A	0.157187	1E-41				Affymetrix, Illumina [23114412] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.2	NR	rs571497-A	0.154629	1E-44		0.037928	[0.033-0.043] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs571497-A	0.157159	7E-24				Affymetrix, Illumina [23467995] (imputed)	N
644	chr19	7827829	7827830	rs571497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.2	NR	rs571497-A	0.154612	9E-27		0.028174	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
644	chr19	7827829	7827830	rs571497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs571497-?	NR	9E-30				NR [~ 8900000] (imputed)	N
644	chr19	7827829	7827830	rs571497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.2	CLEC4M	rs571497-A	0.1544	2E-10		0.03218033	[0.022-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7831627	7831628	rs2277998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.2		rs2277998-A	NR	1E-18		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
644	chr19	7831627	7831628	rs2277998	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19p13.2	CLEC4M	rs2277998-G	0.7	2E-21		9.49	z-score increase	Affymetrix [4314223] (imputed)	N
644	chr19	7831627	7831628	rs2277998	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	19p13.2	CLEC4M	rs2277998-A	0.3	7E-16		0.022	[0.017-0.027] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
644	chr19	7831627	7831628	rs2277998	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	19p13.2	CLEC4M	rs2277998-A	0.3	2E-15	(EA)	0.0226	[0.017-0.028] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
644	chr19	7832000	7832001	rs874492	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		19p13.2	CLEC4M	rs874492-A	NR	4E-8		0.01126	[0.0069-0.0157] nmol/l decrease	NR [19000000] (imputed)	N
644	chr19	7833939	7833940	rs67057658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.2	CLEC4M	rs67057658-A	0.169252	6E-12		0.020233566	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7833939	7833940	rs67057658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.2	CLEC4M	rs67057658-A	0.169244	1E-16		0.024841828	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7833981	7833982	rs1045997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	CLEC4M	rs1045997-T	0.169715	6E-13		0.021509394	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
644	chr19	7842668	7842669	rs4804815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19p13.2	intergenic	rs4804815-G	0.2766	3E-10		0.025186	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7847735	7847736	rs1968252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19p13.2	CLEC4GP1	rs1968252-A	0.2208	3E-10		0.02742383	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7847735	7847736	rs1968252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19p13.2	CLEC4GP1	rs1968252-A	0.2207	1E-10		0.02790586	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7847735	7847736	rs1968252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19p13.2	CLEC4GP1	rs1968252-A	0.2207	9E-11		0.02811737	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7847735	7847736	rs1968252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19p13.2	CLEC4GP1	rs1968252-A	0.2206	4E-12		0.03023833	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
644	chr19	7847735	7847736	rs1968252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19p13.2	CLEC4GP1	rs1968252-A	0.2207	9E-11		0.02817561	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
645	chr19	7871836	7871837	rs2335859	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (anhedonia) (binary trait)	27,288 European ancestry cases, 121,464 European ancestry controls	NA	19p13.2	EXOSC3P2	rs2335859-T	0.602	1E-8		0.009	[0.0070-0.0110] unit decrease	NR [9413637] (imputed)	N
645	chr19	7872358	7872359	rs182917452	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	RETN	rs182917452-G	0.990625	1E-8	(RETN, 3046_31_1)	0.7298059	[0.48-0.98] unit increase	Illumina [> 1000000] (imputed)	N
645	chr19	7891766	7891767	rs484353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.2		rs484353-?	NR	4E-11				NR [~ 8900000] (imputed)	N
645	chr19	7892086	7892087	rs12979658	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.2	CLEC4M, EVI5L	rs12979658-G	0.28	5E-8		5.47	z-score increase	Affymetrix [4312306] (imputed)	N
645	chr19	7900561	7900562	rs652260	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	19p13.2	EVI5L, RETN	rs652260-T	0.54	1E-8		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
645	chr19	7909882	7909883	rs558718	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	19p13.2	EVI5L	rs558718-?	0.11	4E-6				Illumina [1212217]	N
645	chr19	7932972	7932973	rs145043195	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	PRR36	rs145043195-?		6E-16		5.4257	[4.11-6.74] unit decrease	Illumina [31500000] (imputed)	N
645	chr19	7932972	7932973	rs145043195	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	PRR36	rs145043195-?		3E-19		5.9617	[4.66-7.26] unit decrease	Illumina [31500000] (imputed)	N
645	chr19	7965338	7965339	rs3745383	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	MAP2K7	rs3745383-?	NR	9E-6	(TAG 50:5)	0.2843824	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
645	chr19	7968167	7968168	rs2115107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19p13.2		rs2115107-A	NR	5E-12		0.0451	[0.032-0.058] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
645	chr19	7968167	7968168	rs2115107	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.2	NR	rs2115107-G	0.6076	8E-16		0.0382	[0.029-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
645	chr19	7968167	7968168	rs2115107	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.2	NR	rs2115107-G	0.5948	2E-20		0.0357	[0.028-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
645	chr19	7970634	7970635	rs4804833	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	19p13.2	MAP2K7	rs4804833-A	0.3914	7E-6		0.0097	[0.0058-0.0136] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
645	chr19	7970634	7970635	rs4804833	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.2	MAP2K7	rs4804833-A	0.616868	3E-9		0.0133171	[0.0089-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
645	chr19	7970634	7970635	rs4804833	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.2	MAP2K7	rs4804833-A	0.3902	8E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
645	chr19	7972614	7972615	rs8107967	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	MAP2K7	rs8107967-A	0.4341	1E-19		0.0174	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
645	chr19	7972614	7972615	rs8107967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19p13.2	NR	rs8107967-G	0.567574	2E-10		0.0186513	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
645	chr19	7972614	7972615	rs8107967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.2	NR	rs8107967-G	0.5673170000000001	1E-15		0.00671775	[0.0051-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
645	chr19	7972614	7972615	rs8107967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.2	NR	rs8107967-G	0.567302	5E-14		0.00859033	[0.0061-0.011] unit increase	Affymetrix [16585854] (imputed)	N
645	chr19	7972614	7972615	rs8107967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.2	NR	rs8107967-G	0.5673170000000001	9E-17		0.00772171	[0.0059-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
645	chr19	7972614	7972615	rs8107967	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.2	NR	rs8107967-G	0.567302	3E-13		0.0099828	[0.0072-0.0128] unit increase	Affymetrix [16585866] (imputed)	N
645	chr19	7976528	7976529	rs2303700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	19p13.2		rs2303700-?	NR	2E-9				NR [~ 8900000] (imputed)	N
645	chr19	7976697	7976698	rs11878235	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	MAP2K7	rs11878235-G	0.406681	8E-11		0.0127368	[0.0089-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
645	chr19	7976697	7976698	rs11878235	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	19p13.2	NR	rs11878235-A	0.593442	4E-10		0.0436846	[0.03-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
645	chr19	7978429	7978430	rs3679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.2		rs3679-C	NR	8E-10		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
645	chr19	7986637	7986638	rs475002	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19p13.2	MAP2K7	rs475002-G	0.518	1E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
646	chr19	8093264	8093265	rs882951	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs882951-C	0.501	1E-32	(C-C motif chemokine 25, CCL25.14068.29.3)	0.29	[0.25-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
646	chr19	8099789	8099790	rs7246289	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,366 Icelandic ancestry individuals	NA	19p13.2		rs7246289-C	0.5	1E-64		0.316556	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
646	chr19	8106520	8106521	rs6603134	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	ELAVL1	rs6603134-A	0.3991976	4E-15	(EA, C-C motif chemokine 25)	0.3525	[0.27-0.44] unit increase	Affymetrix [509946]	N
646	chr19	8117307	8117308	rs11671930	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19p13.2	NR	rs11671930-?	NR	1E-15	(TECK)	0.5	[0.38-0.62] unit decrease	Illumina [4020654] (imputed)	N
646	chr19	8117607	8117608	rs7259568	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,366 Icelandic ancestry individuals	NA	19p13.2		rs7259568-T	0.1376	5E-80		0.510644	[0.46-0.56] unit increase	Illumina [7506463] (imputed)	N
646	chr19	8117607	8117608	rs7259568	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	CCL25	rs7259568-C	0.86578125	7E-7	(CCL25, 14068_29_3)	0.17693669	[0.11-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
646	chr19	8120497	8120498	rs62124688	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	CCL25	rs62124688-G	0.167	6E-43	(C-C motif chemokine 25, CCL25.2705.5.2)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
646	chr19	8120497	8120498	rs62124688	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	CCL25	rs62124688-G	0.167	4E-48	(C-C motif chemokine 25, CCL25.14068.29.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
646	chr19	8121095	8121096	rs74959615	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	CCL25	rs74959615-A	0.078	5E-114	(C-C motif chemokine 25, CCL25.2705.5.2)	0.97	[0.89-1.05] unit decrease	Affymetrix [10572788] (imputed)	N
646	chr19	8121188	8121189	rs77625270	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	CCL25	rs77625270-C	0.9240625	1E-160	(CCL25, 2705_5_2)	1.2130121	[1.13-1.3] unit increase	Illumina [> 1000000] (imputed)	N
646	chr19	8121359	8121360	rs2032887	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TECK plasma levels	400 French ancestry individuals	NA	19p13.2		rs2032887-A	NR	2E-45		0.644	[0.58-0.7] pg/mL increase	Illumina [5201092] (imputed)	N
646	chr19	8121359	8121360	rs2032887	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,362 Icelandic ancestry individuals	NA	19p13.2		rs2032887-G	0.2222	1E-13		0.166304	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
646	chr19	8121359	8121360	rs2032887	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CCL25 levels	982 Scottish ancestry individuals	NA	19p13.2	NR	rs2032887-G	0.25639	1E-37		0.67009	[0.57-0.77] unit increase	Illumina [7903493] (imputed)	N
647	chr19	8131239	8131240	rs12460243	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	19p13.2	CCL25, FBN3	rs12460243-A		4E-7		0.166	unit increase	Affymetrix [NR]	N
647	chr19	8134028	8134029	rs60941879	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	19p13.2	NR	rs60941879-T	0.08666	2E-6		0.252	[0.15-0.36] unit increase	Illumina [10677593] (imputed)	N
647	chr19	8134615	8134616	rs35624673	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	19p13.2	FBN3	rs35624673-?	NR	2E-6		1.819174	[1.42-2.33]	Illumina [5407269] (imputed)	N
647	chr19	8145927	8145928	rs3848570	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	FBN3, ELAVL1	rs3848570-T	0.05236657	8E-21	(EA, C-C motif chemokine 25)	0.9173	[0.73-1.11] unit decrease	Affymetrix [509946]	N
647	chr19	8150392	8150393	rs17160151	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	19p13.2	FBN3	rs17160151-T	0.064	2E-19		0.42	[0.33-0.52] unit decrease	Affymetrix [339439]	N
647	chr19	8153322	8153323	rs7257658	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	CCL25	rs7257658-?	NR	8E-6	(beta aminoisobutyric acid)	0.341841	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
647	chr19	8154323	8154324	rs78484880	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.2	NR	rs78484880-C	0.1081	6E-9				NR [9056863] (imputed)	N
647	chr19	8173332	8173333	rs77846381	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.2		rs77846381-T	0.11	1E-8		5.69	z score increase	Affymetrix [9061022] (imputed)	N
647	chr19	8179990	8179991	rs35427227	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	19p13.2		rs35427227-?	NR	6E-9				NR [7857346] (imputed)	N
647	chr19	8198480	8198481	rs111455502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.2		rs111455502-?	NR	4E-8				NR [~ 8900000] (imputed)	N
647	chr19	8232733	8232734	rs10416763	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.2	FBN3, CERS4	rs10416763-?		4E-16				Affymetrix, Illumina [NR] (imputed)	N
647	chr19	8235250	8235251	rs139412173	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	19p13.2	CERS4, FBN3	rs139412173-G	0.056	3E-7			NR	Illumina [7289516] (imputed)	N
647	chr19	8235250	8235251	rs139412173	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	19p13.2	CERS4, FBN3	rs139412173-G	0.056	3E-8		0.47	[0.36-0.61]	Illumina [7289516] (imputed)	N
647	chr19	8237842	8237843	rs12463212	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	19p13.2	NR	rs12463212-A		3E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	8E-24		0.12936	[0.1-0.15] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	4E-20		0.126582	[0.1-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	1E-14		0.107564	[0.08-0.135] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	1E-12		0.0957262	[0.069-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	6E-16		0.112387	[0.085-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	2E-14		0.10338	[0.077-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	3E-15		0.0851451	[0.064-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8263647	8263648	rs4804285	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs4804285-G	NR	7E-12		0.0817221	[0.058-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8268223	8268224	rs10426036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs10426036-A	NR	7E-19		0.103672	[0.081-0.127] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8268223	8268224	rs10426036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs10426036-A	NR	1E-25		0.131139	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8268223	8268224	rs10426036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs10426036-A	NR	3E-10		0.0798195	[0.055-0.105] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8268223	8268224	rs10426036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs10426036-A	NR	1E-10		0.0813691	[0.057-0.106] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8268223	8268224	rs10426036	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs10426036-A	NR	4E-17		0.0825988	[0.063-0.102] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8271720	8271721	rs7258249	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs7258249-A	NR	2E-10		0.0706	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
648	chr19	8271720	8271721	rs7258249	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	FBN3, CERS4	rs7258249-G	0.690397	3E-11	(sphingomyelin (d18:1/18:1, d18:2/18:0))	0.172	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8271720	8271721	rs7258249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	CERS4	rs7258249-A	0.510908	3E-10		0.014184387	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
648	chr19	8271720	8271721	rs7258249	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	19p13.2	LASS4	rs7258249-?	NR	1E-34	(levels)	0.0	[0.80-3.70] % increase	Illumina [NR] (imputed)	N
648	chr19	8271720	8271721	rs7258249	19798445	Hicks AA	2009-10-02	PLoS Genet	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	19p13.2	LASS4	rs7258249-G	0.48	2E-27	(SM 18:1Mol%)	0.0	[0.0007-0.001] mol % increase	Illumina [318237]	N
648	chr19	8272145	8272146	rs12982350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.2		rs12982350-G	NR	4E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
648	chr19	8272145	8272146	rs12982350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19p13.2	NR	rs12982350-G	NR	4E-10		0.0153	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
648	chr19	8272145	8272146	rs12982350	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	FBN3, CERS4	rs12982350-C	0.619849	9E-27	(glycosyl ceramide (d18:1/20:0, d16:1/22:0)*)	0.267	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8272162	8272163	rs7246617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs7246617-T	NR	2E-10		0.0734	[0.051-0.096] unit increase	Illumina [6720657] (imputed)	N
648	chr19	8272162	8272163	rs7246617	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	19p13.2	CERS4	rs7246617-A	NR	4E-10	(SM(36:1;2))	0.2049	[0.14-0.27] unit increase	Illumina [~ 9300000] (imputed)	N
648	chr19	8272162	8272163	rs7246617	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	19p13.2	CERS4	rs7246617-A	NR	3E-15	(SM(38:2;2))	0.2465	[0.19-0.31] unit increase	Illumina [~ 9300000] (imputed)	N
648	chr19	8272915	8272916	rs62126382	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs62126382-A	NR	9E-11		0.0556	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
648	chr19	8272915	8272916	rs62126382	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	FBN3, CERS4	rs62126382-C	0.663221	2E-18	(sphingomyelin (d18:1/20:1, d18:2/20:0)*)	0.219	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8272968	8272968	rs201631095	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	FBN3, CERS4	rs201631095-C	0.651793	3E-12	(stearoyl sphingomyelin (d18:1/18:0))	0.176	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8272968	8272968	rs201631095	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	FBN3, CERS4	rs201631095-CA	NR	3E-13	(Sphingomyelin with acyl residue sum C18:0/Sphingomyelin with acyl residue sum C24:1)	0.29578	[0.22-0.37] unit increase	Illumina [up to 9281895] (imputed)	N
648	chr19	8274039	8274040	rs2336171	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	CERS4	rs2336171-G	0.663982	6E-16	(sphingomyelin (d18:1/20:0, d16:1/22:0)*)	0.203	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8274906	8274906	rs147599379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.2	CERS4	rs147599379-CCAGGAAACAGCAAGATTGTGTGG	0.50371	2E-10		0.0147262355	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
648	chr19	8277712	8277713	rs12610250	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	19p13.2	CERS4, CCL25	rs12610250-A	0.4744	1E-21	(Sphingomyeline C18:1)	0.0559	[0.044-0.067] unit decrease	Affymetrix, Illumina [up to 296619] (imputed)	N
648	chr19	8277712	8277713	rs12610250	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	19p13.2	CCL25, CERS4	rs12610250-A	0.4741	1E-25	(Sphingomyeline C18:0)	0.0585	[0.048-0.069] unit decrease	Affymetrix, Illumina [up to 296619] (imputed)	N
648	chr19	8278955	8278956	rs36004722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs36004722-G	NR	2E-12		0.0869592	[0.063-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8278955	8278956	rs36004722	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs36004722-G	NR	2E-11		0.0643904	[0.046-0.083] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8281634	8281635	rs2100944	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 24:0)	7,915 European ancestry individuals	NA	19p13.2	LASS4, CERS4	rs2100944-A	NR	3E-21		9.456	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8281634	8281635	rs2100944	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	19p13.2	LASS4	rs2100944-A	NR	4E-26		10.567	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8281634	8281635	rs2100944	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	19p13.2	LASS4	rs2100944-A	NR	3E-40		13.29	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8285606	8285607	rs11666866	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs11666866-G	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
648	chr19	8285729	8285730	rs11666913	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs11666913-T	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
648	chr19	8285729	8285730	rs11666913	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 24:0)	7,915 European ancestry individuals	NA	19p13.2	LASS4, CERS4	rs11666913-C	NR	1E-17		8.547	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8285729	8285730	rs11666913	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	19p13.2	LASS4	rs11666913-C	NR	4E-16		8.163	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8285729	8285730	rs11666913	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	19p13.2	LASS4	rs11666913-C	NR	2E-28		11.041	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
648	chr19	8286917	8286918	rs7253584	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Sphingomyelin levels	2,045 European ancestry individuals	NA	19p13.2	CERS4	rs7253584-C	NR	3E-9	(SM(38:1;2))	0.2027	[0.14-0.27] unit increase	Illumina [~ 9300000] (imputed)	N
648	chr19	8286917	8286918	rs7253584	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs7253584-C	NR	4E-12	(Hydroxysphingomyelin with acyl residue sum C22:2/Sphingomyelin with acyl residue sum C18:1)	0.353524	[0.25-0.45] unit decrease	Illumina [up to 9281895] (imputed)	N
648	chr19	8286917	8286918	rs7253584	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs7253584-C	NR	2E-14	(Hydroxysphingomyelin with acyl residue sum C22:1/Sphingomyelin with acyl residue sum C18:0)	0.39057	[0.29-0.49] unit decrease	Illumina [up to 9281895] (imputed)	N
648	chr19	8286917	8286918	rs7253584	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs7253584-C	NR	1E-12	(Sphingomyelin with acyl residue sum C16:0/Sphingomyelin with acyl residue sum C18:0)	0.359092	[0.26-0.46] unit decrease	Illumina [up to 9281895] (imputed)	N
648	chr19	8288756	8288757	rs9749262	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs9749262-T	NR	5E-12	(Sphingomyelin with acyl residue sum C18:0/Sphingomyelin with acyl residue sum C24:0)	0.34754	[0.25-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	2E-52		0.206941	[0.18-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	6E-37		0.184917	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	3E-28		0.162319	[0.13-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	2E-35		0.176562	[0.15-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	4E-37		0.186835	[0.16-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	1E-38		0.185444	[0.16-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	8E-23		0.112005	[0.09-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8289518	8289519	rs1466448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs1466448-C	NR	7E-28		0.137746	[0.11-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8291671	8291672	rs7259572	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs7259572-G	NR	8E-14	(Sphingomyelin with acyl residue sum C16:1/Sphingomyelin with acyl residue sum C18:0)	0.382112	[0.28-0.48] unit decrease	Illumina [up to 9281895] (imputed)	N
648	chr19	8291671	8291672	rs7259572	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19p13.2	CERS4	rs7259572-G	NR	6E-19	(Sphingomyelin with acyl residue sum C16:1/Sphingomyelin with acyl residue sum C18:1)	0.44741	[0.35-0.54] unit decrease	Illumina [up to 9281895] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	4E-19		0.0971043	[0.076-0.118] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	5E-18		0.101068	[0.078-0.124] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	4E-14		0.0890912	[0.066-0.112] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	2E-10		0.072043	[0.05-0.094] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	1E-14		0.0905426	[0.067-0.114] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	2E-13		0.0845039	[0.062-0.107] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	7E-13		0.0654668	[0.048-0.083] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8298410	8298411	rs2967625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.2		rs2967625-A	NR	8E-12		0.0688525	[0.049-0.089] unit increase	Affymetrix [87696910] (imputed)	N
648	chr19	8301047	8301048	rs7248003	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	CERS4	rs7248003-C	0.375762	6E-13	(sphingomyelin (d18:1/19:0, d19:1/18:0)*)	0.178	[0.13-0.23] unit decrease	Illumina [13039987] (imputed)	N
648	chr19	8302933	8302934	rs3101742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	CERS4, CTD-3020H12.4	rs3101742-C	0.671578	1E-11		0.016720263	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
648	chr19	8302933	8302934	rs3101742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs3101742-?	NR	9E-16				NR [~ 8900000] (imputed)	N
648	chr19	8309554	8309555	rs73008767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs73008767-C	NR	1E-12		0.121315	[0.088-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8316309	8316310	rs17160333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs17160333-C	NR	2E-10		0.0935649	[0.065-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8318123	8318123	rs59708873	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.2	CERS4	rs59708873-G	0.8516	6E-10	(SM d18:1/20:0)	0.1093	[0.075-0.144] unit increase	Illumina [~ 47000000] (imputed)	N
648	chr19	8320554	8320555	rs17159388	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs17159388-A	NR	5E-11		0.29798	[0.21-0.39] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8327501	8327502	rs28133	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	19p13.2	CERS4	rs28133-C	0.904588805852163	1E-14		0.0656	[0.049-0.082] SD decrease	Illumina [22400000] (imputed)	N
648	chr19	8327501	8327502	rs28133	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	19p13.2	CERS4	rs28133-T	0.08	6E-8		0.072	unit increase (discovery)	Affymetrix, Illumina [8048941] (imputed)	N
648	chr19	8329037	8329038	rs116211475	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs116211475-T	NR	2E-10		0.303822	[0.21-0.4] unit decrease	Affymetrix [87696910] (imputed)	N
648	chr19	8329037	8329038	rs116211475	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.2	CERS4	rs116211475-T	0.1418	3E-8	(SM d16:1/20:0)	0.1233	[0.08-0.167] unit decrease	Illumina [~ 47000000] (imputed)	N
648	chr19	8329038	8329039	rs115654697	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.2	CERS4	rs115654697-A	0.8582	3E-9	(SM d18:2/18:0)	0.1098	[0.074-0.146] unit increase	Illumina [~ 47000000] (imputed)	N
648	chr19	8329038	8329039	rs115654697	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	19p13.2	CERS4	rs115654697-A	0.8582	2E-12	(SM d18:2/20:0)	0.1307	[0.093-0.168] unit increase	Illumina [~ 47000000] (imputed)	N
648	chr19	8369742	8369743	rs2927709	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	19p13.2	CD320	rs2927709-?		3E-6	(male)	0.262	[0.15-0.37] unit decrease	NR [~ 5500000] (imputed)	N
649	chr19	8391652	8391653	rs139641769	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN2	5,356 Icelandic ancestry individuals	NA	19p13.2		rs139641769-A	0.02184	2E-57		0.965283	[0.85-1.08] unit increase	Illumina [7506463] (imputed)	N
649	chr19	8391652	8391653	rs139641769	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	KANK3	rs139641769-A	0.013	1E-23	(Transcobalamin-2, TCN2.5584.21.3)	1.15	[0.93-1.37] unit increase	Affymetrix [10572788] (imputed)	N
649	chr19	8398713	8398714	rs2009733	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	19p13.2	KANK3	rs2009733-A	0.4995	5E-12		0.1217	[0.087-0.156] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
649	chr19	8405159	8405160	rs2972581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	KANK3	rs2972581-G	0.314223	4E-10		0.015222185	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8405159	8405160	rs2972581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	KANK3	rs2972581-G	0.314219	1E-9		0.014877614	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8405176	8405177	rs2913962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	KANK3	rs2913962-T	0.337489	1E-9		0.014473543	[0.0098-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8411755	8411756	rs11667816	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	CTD-2550O8.7	rs11667816-A	0.222064	2E-11		0.019381747	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8415075	8415076	rs117188729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs117188729-T	0.968709	2E-8		0.0665252	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8415075	8415076	rs117188729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs117188729-T	0.968709	5E-8		0.0642027	[0.041-0.087] unit increase	NR [11722792] (imputed)	N
649	chr19	8415075	8415076	rs117188729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs117188729-T	0.968709	5E-9		0.0685713	[0.046-0.092] unit increase	NR [11722792] (imputed)	N
649	chr19	8415075	8415076	rs117188729	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs117188729-T	0.96871	1E-8		0.0674619	[0.044-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	7E-12		0.07824	[0.056-0.101] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	4E-9		0.0675848	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	1E-9		0.068885	[0.047-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	5E-10		0.0709904	[0.049-0.093] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	1E-8		0.0652248	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	9E-9		0.0657349	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	4E-9		0.0683182	[0.046-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968532	4E-8		0.0621565	[0.04-0.084] unit decrease	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968532	2E-9		0.0685115	[0.046-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	2E-9		0.0682861	[0.046-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	4E-9		0.0671794	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	4E-9		0.0668889	[0.045-0.089] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	3E-9		0.0676435	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	3E-8		0.0646956	[0.042-0.088] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	1E-8		0.0667006	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	6E-9		0.0671232	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8420582	8420583	rs79293855	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs79293855-G	0.968531	5E-9		0.0677021	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8421526	8421527	rs375287631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	NR	rs375287631-T	0.371947	3E-12		0.016940163	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8424084	8424085	rs117777747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs117777747-C	0.968359	2E-11		0.077304	[0.055-0.1] unit increase	NR [11722792] (imputed)	N
649	chr19	8424084	8424085	rs117777747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs117777747-C	0.968359	2E-9		0.0704953	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
649	chr19	8424084	8424085	rs117777747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs117777747-C	0.968359	3E-10		0.0730459	[0.05-0.096] unit increase	NR [11722792] (imputed)	N
649	chr19	8424084	8424085	rs117777747	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs117777747-C	0.968359	4E-8		0.0642781	[0.041-0.087] unit increase	NR [11722792] (imputed)	N
649	chr19	8429065	8429066	rs35137994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	ANGPTL4	rs35137994-C	0.943615	3E-29		0.0463913	[0.038-0.054] unit decrease	Affymetrix [NR] (imputed)	N
649	chr19	8429065	8429066	rs35137994	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.2	ANGPTL4	rs35137994-C	0.943642	3E-18		0.0371333	[0.029-0.045] unit decrease	Affymetrix [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-20		0.136943	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-61		0.231219	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980216	4E-16		0.116862	[0.089-0.145] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-78		0.261125	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-47		0.206197	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-64		0.240446	[0.21-0.27] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-101		0.300251	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-46		0.198206	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-34		0.177578	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-100		0.300564	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-39		0.188077	[0.16-0.22] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-102		0.29886	[0.27-0.33] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	8E-62		0.234814	[0.21-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-58		0.232776	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-56		0.224166	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-33		0.174607	[0.15-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-75		0.262456	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-51		0.215802	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-69		0.251811	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-52		0.218233	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-33		0.172859	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-48		0.212136	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-50		0.21313	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-21		0.135955	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-21		0.133784	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-39		0.18825	[0.16-0.22] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-59		0.231196	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-27		0.15756	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-31		0.168662	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-55		0.226326	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-60		0.233136	[0.21-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	8E-10		0.0889013	[0.061-0.117] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-57		0.226767	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-29		0.150339	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-42		0.199006	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-26		0.156788	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-26		0.146602	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-55		0.223225	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-47		0.187101	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-47		0.20664	[0.18-0.23] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-46		0.207901	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-8		0.0787691	[0.051-0.107] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	9E-37		0.168368	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	6E-12		0.100376	[0.072-0.129] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-11		0.0937846	[0.066-0.122] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-26		0.146878	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	2E-21		0.131225	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	4E-10		0.0910716	[0.062-0.12] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	4E-87		0.271592	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	4E-29		0.159327	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	3E-46		0.202603	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	3E-38		0.183791	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	6E-10		0.0882813	[0.06-0.116] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	2E-54		0.2204	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	9E-16		0.114824	[0.087-0.143] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-16		0.117509	[0.089-0.146] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-35		0.179561	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980216	1E-10		0.0960933	[0.067-0.125] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-13		0.100002	[0.073-0.127] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-68		0.245602	[0.22-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-24		0.151496	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-23		0.140715	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-25		0.153679	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-53		0.215795	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980156	8E-48		0.208731	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-13		0.10612	[0.078-0.134] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980307	3E-31		0.173176	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-28		0.163061	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-14		0.109424	[0.081-0.138] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-57		0.22744	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-27		0.143515	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	8E-20		0.13439	[0.11-0.16] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-16		0.119224	[0.09-0.148] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-20		0.126473	[0.099-0.154] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-60		0.233306	[0.21-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	8E-45		0.182962	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-59		0.229841	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-39		0.192318	[0.16-0.22] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-30		0.152466	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	1E-8		0.0808973	[0.053-0.109] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	1E-28		0.162005	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-59		0.214958	[0.19-0.24] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-11		0.0993193	[0.071-0.128] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-20		0.134943	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980216	5E-12		0.0993093	[0.071-0.127] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-22		0.12811	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-68		0.245165	[0.22-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-63		0.238796	[0.21-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-34		0.17248	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-76		0.260644	[0.23-0.29] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-50		0.194836	[0.17-0.22] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	9E-75		0.256634	[0.23-0.28] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-21		0.13006	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-25		0.154011	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-56		0.22562	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-26		0.14511	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-9		0.090217	[0.061-0.119] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	9E-36		0.168157	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-55		0.224744	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-12		0.100556	[0.072-0.129] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-47		0.187437	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-57		0.22754	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-31		0.170656	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-9		0.0888994	[0.06-0.118] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-13		0.105057	[0.077-0.133] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-41		0.176342	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	19p13.2		rs116843064-G	0.98014	2E-20		0.12993	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-8		0.0814578	[0.053-0.11] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-60		0.232114	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-23		0.132474	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-47		0.210917	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-17		0.126446	[0.098-0.155] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-31		0.158445	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-58		0.230034	[0.2-0.26] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-45		0.18303	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	9E-55		0.221553	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-30		0.168899	[0.14-0.2] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-30		0.159178	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-69		0.24313	[0.22-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980216	4E-36		0.177955	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-35		0.183118	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-15		0.114599	[0.086-0.143] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-25		0.153337	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-41		0.195049	[0.17-0.22] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	7E-58		0.221911	[0.19-0.25] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-34		0.180688	[0.15-0.21] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-79		0.268916	[0.24-0.3] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980156	4E-14		0.107327	[0.08-0.135] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-60		0.230899	[0.2-0.26] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-51		0.21565	[0.19-0.24] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-40		0.193981	[0.17-0.22] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-42		0.18093	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-22		0.143003	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-14		0.112386	[0.083-0.141] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-49		0.202638	[0.18-0.23] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-42		0.200011	[0.17-0.23] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-58		0.210375	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-54		0.222291	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-13		0.107922	[0.079-0.137] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-14		0.108021	[0.08-0.136] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-63		0.223863	[0.2-0.25] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-66		0.239381	[0.21-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980216	4E-32		0.167245	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-37		0.183706	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	8E-48		0.211066	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-52		0.210939	[0.18-0.24] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	1E-86		0.277502	[0.25-0.31] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-28		0.157885	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-62		0.231012	[0.2-0.26] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-64		0.242874	[0.21-0.27] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	5E-49		0.212691	[0.18-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-39		0.174951	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-16		0.121117	[0.092-0.15] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-11		0.0991179	[0.07-0.128] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	3E-47		0.196646	[0.17-0.22] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-50		0.215246	[0.19-0.24] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-56		0.205775	[0.18-0.23] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-56		0.225786	[0.2-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-14		0.107745	[0.08-0.136] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-57		0.220898	[0.19-0.25] unit increase	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	4E-25		0.149441	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	6E-33		0.156898	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs116843064-G	0.980149	2E-30		0.155064	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19p13.2		rs116843064-A	NR	2E-163		0.2279	[0.21-0.24] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19p13.2		rs116843064-A	NR	2E-145		0.2107	[0.19-0.23] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs116843064-A	NR	1E-10		0.309115	[0.21-0.4] unit increase	Affymetrix [87696910] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs116843064-A	NR	4E-10		0.302673	[0.21-0.4] unit increase	Affymetrix [87696910] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs116843064-A	NR	8E-11		0.250764	[0.18-0.33] unit increase	Affymetrix [87696910] (imputed)	N
649	chr19	8429322	8429323	rs116843064	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19p13.2		rs116843064-A	NR	3E-10		0.261511	[0.18-0.34] unit increase	Affymetrix [87696910] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19p13.2	ANGPTL4	rs116843064-G	0.979449	3E-6		1.15	[1.09-1.23]	NR [8126035] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-A	NR	4E-161		0.2364	[0.22-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-A	NR	3E-145		0.2342	[0.22-0.25] unit increase	Affymetrix [9000000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-A	NR	6E-61		0.1509	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-?		5E-30		0.2155	[0.18-0.25] unit increase	Illumina [31500000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-?		1E-28		0.2189	[0.18-0.26] unit decrease	Illumina [31500000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019516	1E-12		0.057574634	[0.042-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019517	8E-10		0.049581755	[0.034-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019539	2E-26		0.0849582	[0.069-0.101] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019501	9E-16		0.065228626	[0.049-0.081] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019496	9E-10		0.049355358	[0.034-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.019497	9E-10		0.049381983	[0.034-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-G	0.980981	5E-30				Affymetrix, Illumina [22063850] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.2	NR	rs116843064-G	0.9804	4E-33		0.085878	[0.072-0.1] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-G	0.980673	3E-215		0.226178	[0.21-0.24] unit increase	Affymetrix [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-G	0.980673	6E-195		0.206057	[0.19-0.22] unit decrease	Affymetrix [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-G	0.980685	7E-78		0.133106	[0.12-0.15] unit decrease	Affymetrix [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-?	NR	9E-123		0.2236	[0.21-0.24] unit decrease	Affymetrix [5701386] (imputed)	N
649	chr19	8429322	8429323	rs116843064	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.0191837	1E-37		0.337476	[0.29-0.39] unit decrease	Affymetrix [9463307] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	19p13.2	ANGPTL4	rs116843064-G	0.981	1E-9		0.0643	[0.044-0.085] unit increase	Affymetrix, Illumina [at least 228985]	N
649	chr19	8429322	8429323	rs116843064	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	19p13.2	ANGPTL4	rs116843064-G	0.9797	7E-10		0.0656	[0.045-0.086] unit increase	Affymetrix, Illumina [at least 228985]	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	4E-21				Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	2E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	4E-22	(EA)			Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	2E-23				Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	5E-11	(EA)	0.095	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	4E-13		0.096	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	8E-6	(EA)	0.097	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	2E-6		0.083	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	8E-30				Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	7E-30	(EA)			Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	7E-36	(EA)			Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	ANGPTL4	rs116843064-A	NR	2E-34				Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	2E-14	(EA)	0.045	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	2E-14		0.042	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	5E-10		0.04385	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	ANGPTL4	rs116843064-A	NR	1E-11	(EA)	0.05798	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs116843064-?	NR	4E-28				NR [~ 8900000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	ANGPTL4	rs116843064-A	0.0193	6E-134		0.2524	[0.23-0.27] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	ANGPTL4	rs116843064-A	0.0191	3E-137		0.2576	[0.24-0.28] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-G	0.974	3E-14	(EA)	0.126	unit increase	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs116843064-G	0.974	1E-11	(EA)	0.102	unit decrease	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	19p13.2	ANGPTL4, RAB11B-AS1	rs116843064-A	0.0202	4E-10		0.1402	[0.096-0.184] unit decrease	Affymetrix [at least 7947838] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19p13.2	ANGPTL4, RAB11B-AS1	rs116843064-A	0.0197	1E-11		0.1609	[0.11-0.21] unit decrease	NR [8041861] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.2	ANGPTL4, RAB11B-AS1	rs116843064-A	0.02	1E-11		0.161	[0.11-0.21] unit decrease	Affymetrix [7947838] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19p13.2	ANGPTL4	rs116843064-?	NR	1E-7		0.275	unit decrease	Illumina [15144991] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in HDL	8,372 Finnish ancestry males	NA	19p13.2	ANGPTL4	rs116843064-?	NR	9E-6		0.232	unit increase	Illumina [15144991] (imputed)	N
649	chr19	8429322	8429323	rs116843064	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	19p13.2	ANGPTL4	rs116843064-?	NR	8E-10		0.319	unit increase	Illumina [15144991] (imputed)	N
649	chr19	8429322	8429323	rs116843064	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	19p13.2	ANGPTL4	rs116843064-G	0.98	3E-7		1.17	[1.10-1.25]	Affymetrix [9149595] (imputed)	N
649	chr19	8429322	8429323	rs116843064	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	19p13.2	ANGPTL4	rs116843064-A	0.023	6E-10		0.24762033	[0.17-0.33] mg/dl increase	Illumina [24111857] (imputed)	N
649	chr19	8429322	8429323	rs116843064	27036123	van Leeuwen EM	2016-04-01	J Med Genet	Meta-analysis of 49 549 individuals imputed with the 1000 Genomes Project reveals an exonic damaging variant in ANGPTL4 determining fasting TG levels.	Triglycerides	41,142 European ancestry individuals, 705 East Asian ancestry individuals, 6,287 African American individuals, 1,415 Hispanic individuals	60,827 European ancestry individuals, 9,982 Indian Asian ancestry individuals, 2,710 African American/Afro-Caribbean individuals	19p13.2	ANGPTL4	rs116843064-A	0.03	4E-13		0.087	[0.063-0.111] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr19	8429322	8429323	rs116843064	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.03	3E-10	(VLDL diameter)	0.22	[0.16-0.28] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
649	chr19	8429322	8429323	rs116843064	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-G	0.97	4E-15		0.183	[0.14-0.23] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
649	chr19	8429322	8429323	rs116843064	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-A	0.03	2E-14		0.178	[0.13-0.22] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
649	chr19	8429322	8429323	rs116843064	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-?	0.0202	3E-37	(EA)	0.15	unit decrease	Illumina [247644]	N
649	chr19	8429322	8429323	rs116843064	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19p13.2	ANGPTL4	rs116843064-?	0.0201	2E-29	(EA)	4.0	mg/dl increase	Illumina [247644]	N
649	chr19	8431580	8431581	rs2278236	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19p13.2		rs2278236-A	0.5158	6E-7	(EA)	0.0064	[0.0039-0.0089] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
649	chr19	8431580	8431581	rs2278236	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2278236-G	NR	3E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8431580	8431581	rs2278236	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2278236-G	0.484	3E-7	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8431580	8431581	rs2278236	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19p13.2	ANGPTL4	rs2278236-A	0.543	1E-16	(Trans-ethnic initial)	0.0331	[0.026-0.04] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
649	chr19	8432736	8432737	rs117760119	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	19p13.2	NR	rs117760119-T	0.0798	1E-16				Affymetrix, Illumina [at least 2500000] (imputed)	N
649	chr19	8433120	8433121	rs149480839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs149480839-C	0.968497	7E-9		0.0664279	[0.044-0.089] unit increase	NR [11722792] (imputed)	N
649	chr19	8433120	8433121	rs149480839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs149480839-C	0.968502	6E-9		0.0670148	[0.044-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8433120	8433121	rs149480839	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs149480839-C	0.968497	2E-8		0.0633396	[0.041-0.085] unit decrease	NR [11722792] (imputed)	N
649	chr19	8433195	8433196	rs7255436	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19p13.2		rs7255436-A	0.5323	4E-6		0.0053	[0.0029-0.0077] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
649	chr19	8433195	8433196	rs7255436	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7255436-C	NR	8E-9		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8433195	8433196	rs7255436	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7255436-C	0.481	4E-7	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8433195	8433196	rs7255436	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	ANGPTL4	rs7255436-C	0.47	2E-8		0.032	[NR] unit decrease	NR [NR] (imputed)	N
649	chr19	8433195	8433196	rs7255436	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19p13.2	ANGPTL4	rs7255436-C	0.47	3E-8		0.45	[0.29-0.61] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
649	chr19	8435992	8435993	rs761889493	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	19p13.2		rs761889493-?	NR	1E-10		0.330928	[0.23-0.43] unit decrease	NR [9800000] (imputed)	N
649	chr19	8440747	8440748	rs192239286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.2		rs192239286-?	NR	8E-10				NR [~ 8900000] (imputed)	N
649	chr19	8442201	8442202	rs62117489	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	ANGPTL4	rs62117489-C	0.943568	6E-23		0.0426643	[0.034-0.051] unit increase	Affymetrix [NR] (imputed)	N
649	chr19	8445605	8445606	rs28830565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.2		rs28830565-T	NR	7E-24		0.072	[0.058-0.086] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
649	chr19	8445605	8445606	rs28830565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.2		rs28830565-T	NR	4E-27		0.0768	[0.063-0.091] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
649	chr19	8445605	8445606	rs28830565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.2		rs28830565-?	NR	3E-41				NR [~ 8900000] (imputed)	N
649	chr19	8445909	8445910	rs2913980	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19p13.2	ANGPTL4	rs2913980-?	NR	1E-14		0.007636	[0.0053-0.01] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
649	chr19	8450239	8450240	rs145267792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs145267792-A	0.0276091	1E-37				Affymetrix, Illumina [24246363] (imputed)	N
649	chr19	8451936	8451937	rs7351103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.2		rs7351103-A	NR	4E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
649	chr19	8452044	8452045	rs11666233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	RAB11B-AS1	rs11666233-A	0.516395	1E-9		0.0136626875	[0.0092-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8452044	8452045	rs11666233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.2	RAB11B-AS1	rs11666233-A	0.516312	6E-14		0.016923241	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	1E-8		0.0650339	[0.043-0.087] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	3E-11		0.0753112	[0.053-0.097] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	5E-11		0.0749133	[0.053-0.097] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	6E-9		0.0652957	[0.043-0.087] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	1E-10		0.0745473	[0.052-0.097] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	4E-8		0.0631623	[0.041-0.086] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968509	1E-10		0.0709339	[0.049-0.093] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	5E-9		0.067305	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	5E-9		0.0667495	[0.044-0.089] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	7E-9		0.0679258	[0.045-0.091] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	7E-10		0.0706055	[0.048-0.093] unit decrease	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	9E-10		0.069447	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	2E-9		0.0690989	[0.047-0.092] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	4E-9		0.0677064	[0.045-0.09] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	8E-9		0.0659643	[0.044-0.088] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	2E-9		0.0694892	[0.047-0.092] unit decrease	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	7E-10		0.0709297	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	2E-9		0.0677603	[0.046-0.09] unit decrease	NR [11722792] (imputed)	N
649	chr19	8452260	8452261	rs368970058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs368970058-C	0.968508	1E-9		0.0700299	[0.048-0.093] unit increase	NR [11722792] (imputed)	N
649	chr19	8452373	8452374	rs533649954	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.2	RAB11B-AS1	rs533649954-G	0.0296	8E-16		0.08506558	[0.064-0.106] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr19	8452680	8452681	rs145430844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	RAB11B-AS1	rs145430844-A	0.027814	4E-36		0.0811708	[0.069-0.093] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8452680	8452681	rs145430844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	RAB11B-AS1	rs145430844-A	0.0278080000000001	1E-38		0.08715832	[0.074-0.1] unit increase	Affymetrix [93095623] (imputed)	N
649	chr19	8452680	8452681	rs145430844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.2	NR	rs145430844-A	0.02742	4E-40		0.077444	[0.066-0.089] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
649	chr19	8452680	8452681	rs145430844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.2	NR	rs145430844-A	0.027418	2E-44		0.082803	[0.071-0.094] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
649	chr19	8453504	8453504	rs149183129	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.2	NR	rs149183129-I	0.030382	1E-10		0.038179	[0.027-0.05] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
649	chr19	8453504	8453504	rs149183129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.2	RAB11B-AS1	rs149183129-CT	0.0299	5E-18		0.09032841	[0.07-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr19	8454317	8454318	rs28364584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs28364584-C	NR	7E-15		0.0213	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
649	chr19	8454317	8454318	rs28364584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs28364584-C	NR	5E-36		0.0359	[0.03-0.042] unit increase	Affymetrix [9000000] (imputed)	N
649	chr19	8454317	8454318	rs28364584	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs28364584-C	NR	1E-22		0.0281	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
649	chr19	8456280	8456281	rs7254836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs7254836-A	0.0374598	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
649	chr19	8456280	8456281	rs7254836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs7254836-A	0.0367646	7E-42				Affymetrix, Illumina [20825802] (imputed)	N
649	chr19	8459564	8459565	rs2913974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	RAB11B	rs2913974-C	0.352116	1E-16		0.01945266	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8459564	8459565	rs2913974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	RAB11B	rs2913974-C	0.352152	5E-15		0.018470343	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8459564	8459565	rs2913974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	RAB11B	rs2913974-C	0.352152	3E-14		0.017914707	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8461662	8461663	rs12976739	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	19p13.2	ANGPTL4	rs12976739-?	NR	4E-16		0.007325	[0.0053-0.0093] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
649	chr19	8466791	8466792	rs11670119	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs11670119-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
649	chr19	8468484	8468485	rs2241588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs2241588-?	NR	5E-8				NR [~ 8900000] (imputed)	N
649	chr19	8469737	8469738	rs2967605	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2967605-C	NR	8E-11		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8469737	8469738	rs2967605	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2967605-C	0.814	8E-9	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
649	chr19	8469737	8469738	rs2967605	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.2	ANGPTL4	rs2967605-T	0.16	1E-8		0.12	[0.04-0.20] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
649	chr19	8481001	8481002	rs141428049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs141428049-?	NR	8E-9				NR [~ 8900000] (imputed)	N
649	chr19	8482183	8482184	rs117621296	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	19p13.2	MAR02	rs117621296-T	NR	9E-6	(males)	0.31	[0.17-0.45] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
649	chr19	8499356	8499356	rs572017058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	MARCH2	rs572017058-TA	0.368421	2E-13		0.0158216	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8499356	8499356	rs572017058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	MARCH2	rs572017058-TA	0.368436	4E-10		0.014341113	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr19	8500050	8500051	rs11259979	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.2	MARCH2	rs11259979-C	0.690864	1E-11		0.0136393	[0.0097-0.0176] unit increase	NR [13737936] (imputed)	N
649	chr19	8500050	8500051	rs11259979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.2		rs11259979-?	NR	1E-11				NR [~ 8900000] (imputed)	N
649	chr19	8500050	8500051	rs11259979	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.2		rs11259979-?	NR	3E-10		0.0141969	[0.0097-0.0187] unit increase	Affymetrix [20259828] (imputed)	N
649	chr19	8512939	8512940	rs17160491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs17160491-G	NR	5E-9		0.0157	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
649	chr19	8512939	8512940	rs17160491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs17160491-G	NR	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
650	chr19	8537095	8537096	rs35279560	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	HNRNPM	rs35279560-T	0.3091	1E-13		0.015	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
650	chr19	8546137	8546138	rs59372292	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.2	HNRNPM, PRAM1	rs59372292-T	0.22	5E-7		0.039	[0.023-0.055] unit increase	Affymetrix [7947838] (imputed)	N
650	chr19	8561131	8561132	rs184092908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	19p13.2		rs184092908-C	NR	2E-9		0.5761	[0.39-0.76] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
650	chr19	8566298	8566299	rs2967595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.2	PRAM1	rs2967595-T	0.167788	6E-22		0.028863434	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr19	8566633	8566634	rs1609712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.2	PRAM1	rs1609712-A	0.167455	6E-28		0.032580763	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr19	8569063	8569064	rs2967602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs2967602-C	0.17286	8E-20				Affymetrix, Illumina [19905671] (imputed)	N
650	chr19	8569063	8569064	rs2967602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.2	NR	rs2967602-C	0.165556	9E-23		0.028048	[0.022-0.034] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
650	chr19	8586944	8586945	rs374214765	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	19p13.2		rs374214765-?	NR	2E-6		2.0500288	[1.21-2.89] unit increase	Illumina [9842460] (imputed)	N
650	chr19	8596372	8596375	rs200722509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.2	MYO1F	rs200722509-A	0.015769	4E-10		0.05918376	[0.041-0.078] unit increase	Affymetrix [93095623] (imputed)	N
650	chr19	8615588	8615589	rs4804311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.2	NR	rs4804311-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
650	chr19	8625080	8625081	rs111644945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs111644945-A	NR	2E-17		0.0333	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
650	chr19	8625080	8625081	rs111644945	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs111644945-A	NR	3E-12		0.0285	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
650	chr19	8632074	8632075	rs7248239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.2		rs7248239-?	NR	3E-8				NR [~ 8900000] (imputed)	N
650	chr19	8637966	8637967	rs12980251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.2		rs12980251-A	0.160262	5E-10		0.0172533	[0.012-0.023] unit decrease	Illumina [13479295] (imputed)	N
650	chr19	8637966	8637967	rs12980251	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	MYO1F	rs12980251-?	NR	9E-11		0.025342843	[0.018-0.033] unit decrease	Illumina [27896057] (imputed)	N
650	chr19	8640106	8640107	rs4804312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	MYO1F	rs4804312-C	NR	8E-14		0.0215279	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
650	chr19	8640106	8640107	rs4804312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	MYO1F	rs4804312-C	NR	3E-12		0.0198633	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
650	chr19	8640106	8640107	rs4804312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.2	NR	rs4804312-?	NR	5E-29				Affymetrix [~ 8270000] (imputed)	N
650	chr19	8640106	8640107	rs4804312	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.2	AC130469.1, MYO1F	rs4804312-T	0.537	4E-7		0.0349	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.2	MYO1F	rs4542783-T	0.5462	3E-8	(EA)	0.0241	[0.016-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.2	MYO1F	rs4542783-T	0.5413	2E-8		0.0232	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19p13.2	MYO1F	rs4542783-T	0.5413	5E-6		0.0223	[0.013-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.2	MYO1F	rs4542783-?	0.5462	9E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.2	MYO1F	rs4542783-?	0.5413	1E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19p13.2	ADAMTS10	rs4542783-T	0.543	4E-6		0.0211	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.2	ADAMTS10	rs4542783-T	0.543	4E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.2	ADAMTS10	rs4542783-T	0.543	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.2	ADAMTS10	rs4542783-T	0.543	6E-7	(women)	0.027	[0.016-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.2	ADAMTS10	rs4542783-T	0.543	1E-8		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
650	chr19	8642159	8642160	rs4542783	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.2	ADAMTS10	rs4542783-T	0.5398	3E-6	(EA, men)	0.0265	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
650	chr19	8642159	8642160	rs4542783	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.2	ADAMTS10	rs4542783-T	0.5398	2E-8	(EA)	0.0227	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
650	chr19	8644030	8644031	rs4072910	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.2	ADAMTS10	rs4072910-C	0.442	1E-18		0.032	[0.024-0.04] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
650	chr19	8644030	8644031	rs4072910	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.2	ADAMTS10	rs4072910-C	0.46	4E-13		0.031	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
650	chr19	8649388	8649388	rs35235097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs35235097-CA	NR	2E-8		0.0190797	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
650	chr19	8649388	8649388	rs35235097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs35235097-CA	NR	6E-13		0.0243502	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
651	chr19	8654105	8654106	rs73501572	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs73501572-A	NR	2E-9		0.027553	[0.019-0.037] unit increase	Affymetrix [321114] (imputed)	N
651	chr19	8654105	8654106	rs73501572	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.2	NR	rs73501572-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
651	chr19	8654915	8654916	rs3923268	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	19p13.2	NR	rs3923268-A	0.09627	5E-8		0.2867	[0.18-0.39] unit increase	Illumina [10677593] (imputed)	N
651	chr19	8667358	8667359	rs7247304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs7247304-T	NR	7E-9		0.0232154	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8667358	8667359	rs7247304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs7247304-T	NR	2E-15		0.0289976	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs11670030-G	NR	6E-9		0.0382775	[0.025-0.051] unit decrease	Affymetrix [127266] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs11670030-G	NR	7E-20		0.0547927	[0.043-0.067] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs11670030-G	NR	8E-31		0.0751574	[0.062-0.088] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs11670030-G	NR	5E-23		0.0587417	[0.047-0.07] unit decrease	Affymetrix [321016] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs11670030-G	NR	2E-19		0.0585935	[0.046-0.071] unit decrease	Affymetrix [323123] (imputed)	N
651	chr19	8669866	8669867	rs11670030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs11670030-G	NR	6E-12		0.0449254	[0.032-0.058] unit decrease	Affymetrix [323858] (imputed)	N
651	chr19	8669866	8669867	rs11670030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.2		rs11670030-?	NR	2E-12				NR [~ 8900000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.2		rs62621197-T	NR	1E-18		0.0506	[0.039-0.062] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.2		rs62621197-T	NR	1E-134		0.113	[0.1-0.12] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	19p13.2		rs62621197-T	NR	4E-12		0.2282	[0.16-0.29] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	NR	9E-10		0.0532039	[0.036-0.07] unit decrease	Affymetrix [323858] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	NR	5E-13		0.0627912	[0.046-0.08] unit decrease	Affymetrix [127266] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs62621197-T	NR	9E-31		0.0907255	[0.075-0.106] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	NR	2E-43		0.118534	[0.1-0.14] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs62621197-T	NR	3E-37		0.0994788	[0.084-0.115] unit decrease	Affymetrix [321016] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	NR	1E-25		0.0893825	[0.073-0.106] unit decrease	Affymetrix [323123] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs62621197-T	NR	4E-11		0.0520687	[0.037-0.068] unit decrease	Affymetrix [321169] (imputed)	N
651	chr19	8670146	8670147	rs62621197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	NR	3E-15		0.067749	[0.051-0.085] unit decrease	Affymetrix [323858] (imputed)	N
651	chr19	8670146	8670147	rs62621197	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	ADAMTS10	rs62621197-T	0.0372	1E-17		0.0446	[0.034-0.055] unit decrease	Affymetrix [18391927] (imputed)	N
651	chr19	8670146	8670147	rs62621197	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	19p13.2	ADAMTS10	rs62621197-T	0.037	4E-11		0.04	[0.026-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
651	chr19	8670146	8670147	rs62621197	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	19p13.2	ADAMTS10	rs62621197-T	0.037	2E-8		0.04	[0.024-0.056] unit decrease	Affymetrix [18391927] (imputed)	N
651	chr19	8670146	8670147	rs62621197	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19p13.2	ADAMTS10	rs62621197-C	0.962835	1E-9		0.0235313	[0.016-0.031] unit decrease	Affymetrix [12370749]	N
651	chr19	8670146	8670147	rs62621197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs62621197-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.2	NR	rs62621197-?	NR	8E-79				Affymetrix [~ 8270000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	19p13.2	ADAMTS10	rs62621197-T	0.036	8E-14		1.31	[1.22-1.40]	Affymetrix [84000000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	8E-46	(females)	0.1468	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	1E-36		0.09653	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	2E-33	(females)	0.1261	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	2E-28		0.08539	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	7E-10	(females)	0.05968	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	5E-7		0.03607	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.2	ADAMTS10, MYO1F	rs62621197-T	0.0360971	3E-6	(males)	0.007067	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs62621197-?	NR	4E-12				NR [~ 8900000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs62621197-?	NR	2E-233				NR [~ 8900000] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	19p13.2	ADAMTS10	rs62621197-?		1E-70				Illumina [9499600] (imputed)	N
651	chr19	8670146	8670147	rs62621197	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	19p13.2	ADAMTS10	rs62621197-T	0.036	5E-121	(height)	0.1117	[0.1-0.12] unit decrease	Illumina [9499600] (imputed)	N
651	chr19	8670146	8670147	rs62621197	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.2	ADAMTS10	rs62621197-T	0.0377	2E-11		0.1356	[0.096-0.175] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
651	chr19	8671661	8671662	rs4294931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	ADAMTS10	rs4294931-A	NR	9E-10		0.0173666	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
651	chr19	8671999	8672000	rs7249094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs7249094-A	NR	2E-8		0.0182079	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
651	chr19	8671999	8672000	rs7249094	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	19p13.2	MYO1F, PRAM1, OR2Z1, ADAMTS10	rs7249094-G	0.59	1E-6		4.3	[2.54-6.06] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
651	chr19	8672075	8672076	rs7253116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19p13.2	ADAMTS10	rs7253116-A	NR	1E-12		0.0226974	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
651	chr19	8745880	8745881	rs62119448	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.2	NR	rs62119448-A	0.3124	2E-8				NR [9056863] (imputed)	N
651	chr19	8749261	8749262	rs12971658	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.2		rs12971658-T	0.25	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
651	chr19	8749261	8749262	rs12971658	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.2	NR	rs12971658-T	0.2637	2E-8				NR [9056863] (imputed)	N
651	chr19	8751985	8751986	rs10404710	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.2		rs10404710-C	0.32	4E-8		5.48	z score increase	Affymetrix [9061022] (imputed)	N
651	chr19	8753563	8753564	rs2967719	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.2		rs2967719-C	0.24	7E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
651	chr19	8767517	8767518	rs11668163	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	19p13.2	ADAMTS10, ACTL9	rs11668163-T	0.41	9E-6		55.96251	[31.32-80.6] kcal/day decrease	Affymetrix [491265]	N
651	chr19	8779162	8779163	rs4239542	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	19p13.2	intergenic	rs4239542-T	NR	1E-6		0.133802	[0.08-0.188] unit increase	Illumina [7433384] (imputed)	N
652	chr19	8785743	8785744	rs2918302	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	19p13.2	ADAMTS10, ACTL9	rs2918302-A	0.156	5E-11		0.038	[0.026-0.05] unit decrease	NR [NR] (imputed)	N
652	chr19	8785743	8785744	rs2918302	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	19p13.2	ADAMTS10, ACTL9	rs2918302-A	0.156	5E-11		0.038	[0.026-0.05] unit decrease	NR [7647814] (imputed)	N
652	chr19	8785743	8785744	rs2918302	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	19p13.2	ADAMTS10, ACTL9	rs2918302-?	NR	5E-10		1.064	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
652	chr19	8785743	8785744	rs2918302	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	19p13.2	ADAMTS10, ACTL9	rs2918302-A	NR	9E-7		1.047	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
652	chr19	8785950	8785951	rs2967683	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	OR2Z1	rs2967683-?	NR	3E-6	(TAG 56:2)	0.19513215	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
652	chr19	8786912	8786913	rs4499342	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	19p13.2	ADAMTS10, ACTL9	rs4499342-T	0.147	1E-9		0.0293096	[0.02-0.039] unit increase	Illumina [13519193] (imputed)	N
652	chr19	8786912	8786913	rs4499342	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.2	ADAMTS10, ACTL9	rs4499342-T	0.414	5E-9	(women)	0.0368316	[0.024-0.049] unit increase	Illumina [13520550] (imputed)	N
652	chr19	8786912	8786913	rs4499342	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	19p13.2	ADAMTS10, ACTL9	rs4499342-T	0.147	8E-12		0.0299657	[0.021-0.039] unit increase	Illumina [13520550] (imputed)	N
652	chr19	8787026	8787027	rs2918300	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	19p13.2	NR	rs2918300-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
652	chr19	8787272	8787273	rs2918299	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	19p13.2		rs2918299-T	0.1651	1E-17		1.14		Affymetrix, Illumina [9397031] (imputed)	N
652	chr19	8787749	8787750	rs61154119	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	19p13.2	ACTL9	rs61154119-T	0.84	2E-8		0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
652	chr19	8789226	8789227	rs10422871	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on Natural Killer T	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.2		rs10422871-T	0.08882	4E-9		0.2765	[0.18-0.37] unit decrease	Illumina [18030777] (imputed)	N
652	chr19	8789380	8789381	rs2164983	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	19p13.2	ACTL9	rs2164983-A	NR	2E-11	(EA, fixed effects)	1.12	[1.08-1.15]	Illumina [15539996] (imputed)	N
652	chr19	8789380	8789381	rs2164983	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	19p13.2	ACTL9	rs2164983-A	0.15	7E-9		1.16	[1.10-1.22]	Affymetrix, Illumina [~ 2500000] (imputed)	N
652	chr19	8789421	8789421	rs146366338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	19p13.2		rs146366338-ACACT	NR	1E-9		0.1171	[0.079-0.155] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
652	chr19	8789665	8789666	rs2967676	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	19p13.2	ACTL9	rs2967676-A	0.841635	2E-25		0.043676	[0.035-0.052] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
652	chr19	8789665	8789666	rs2967676	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19p13.2	ACTL9	rs2967676-A	0.844833	1E-8		0.02059	[0.014-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
652	chr19	8789720	8789721	rs2967677	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	19p13.2	ACTL9	rs2967677-C	0.846878	6E-25		0.044858	[0.036-0.053] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
652	chr19	8789720	8789721	rs2967677	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19p13.2	ACTL9	rs2967677-C	0.845141	1E-8		0.020671	[0.014-0.028] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
652	chr19	8789721	8789722	rs2918307	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	19p13.2	ADAMTS10, ACTL9	rs2918307-G	0.16	5E-12	(EA, fixed effects)	1.12	[1.08-1.16]	Illumina [15539996] (imputed)	N
652	chr19	8789911	8789912	rs2918308	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.2	ADAMTS10, ACTL9	rs2918308-A	0.84	1E-9		1.07	[1.06-1.08]	Illumina [at least 560000] (imputed)	N
652	chr19	8789911	8789912	rs2918308	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.2	ADAMTS10, ACTL9	rs2918308-?	NR	1E-9		1.0706638	[1.05-1.09]	Illumina [13757430] (imputed)	N
652	chr19	8790197	8790198	rs2967678	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	19p13.2	ADAMTS10, ACTL9	rs2967678-T	0.147	4E-15		0.0400543	[0.03-0.05] unit increase	Illumina [13520550] (imputed)	N
652	chr19	8791581	8791582	rs35358447	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	19p13.2	NR	rs35358447-a	0.1683	2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [16201029] (imputed)	N
652	chr19	8808941	8808942	rs2340550	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		19p13.2	ACTL9	rs2340550-G	0.693	9E-7		0.05	[0.03-0.07] unit decrease	Illumina [220721]	N
652	chr19	8808941	8808942	rs2340550	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		19p13.2	ACTL9	rs2340550-G	0.693	7E-7		0.065	[0.04-0.09] unit decrease	Illumina [60745]	N
652	chr19	8808941	8808942	rs2340550	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		19p13.2	ACTL9	rs2340550-G	0.684	4E-7		0.053	[0.033-0.073] unit decrease	Illumina [185190]	N
652	chr19	8808941	8808942	rs2340550	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		19p13.2	ACTL9	rs2340550-G	0.684	2E-7		0.071	[0.044-0.098] unit decrease	Illumina [46877]	N
652	chr19	8817908	8817909	rs11667346	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	19p13.2		rs11667346-G	0.099	4E-6		0.194814	[0.11-0.28] unit decrease	Affymetrix, Illumina [538635] (imputed)	N
652	chr19	8831285	8831286	rs16995681	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p13.2	NR	rs16995681-?	NR	4E-9				Affymetrix [NR]	N
653	chr19	8962460	8962461	rs1964289	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	19p13.2	MUC16	rs1964289-C	0.8853	3E-7		0.184	[0.11-0.25] unit increase	Illumina [up to 38043574] (imputed)	N
653	chr19	8968231	8968232	rs76164207	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	19p13.2	NR	rs76164207-A	0.1655	4E-6		0.4204	[0.24-0.6] unit decrease	Illumina [~ 600000] (imputed)	N
653	chr19	9007629	9007630	rs73005873	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	19p13.2	MUC16	rs73005873-A	0.397	2E-17		0.14	[0.11-0.17] unit increase	Illumina [NR] (imputed)	N
653	chr19	9009160	9009161	rs12976386	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs12976386-A	0.45	1E-16		0.1298	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
653	chr19	9021451	9021451	rs34314892	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	19p13.2	NR	rs34314892-?		3E-6		1.7	[1.36-2.13]	Illumina [539473] (imputed)	N
654	chr19	9102196	9102197	rs28391720	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	19p13.2	NR	rs28391720-?	NR	2E-6		0.0518	[0.03-0.073] unit decrease	Illumina [at least 560000] (imputed)	N
654	chr19	9106156	9106157	rs150975336	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	19p13.2	MUC16	rs150975336-G	0.026900000000000035	4E-7		1.5866106		Illumina [8265319] (imputed)	N
654	chr19	9126467	9126468	rs11667379	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris heterochromicity	377 East Asian ancestry individuals	NA	19p13.2	intergenic	rs11667379-C	0.411039	3E-6		0.348	[0.2-0.49] unit increase	Illumina [at least 520076] (imputed)	N
654	chr19	9128341	9128342	rs10413947	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	19p13.2	MUC16, OR1M1	rs10413947-G	NR	1E-8		1.045	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
654	chr19	9129659	9129660	rs10416530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	19p13.2		rs10416530-T	NR	3E-8		0.0493	[0.032-0.067] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
654	chr19	9129659	9129660	rs10416530	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19p13.2	MUC16	rs10416530-C	0.35	1E-10				NR [> 9500000] (imputed)	N
654	chr19	9136305	9136306	rs11672713	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs11672713-C	0.72	2E-24		0.163	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
654	chr19	9137194	9137195	rs73012738	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19p13.2	MUC16	rs73012738-G	0.32467999999999997	4E-11		1.04399	1.03075037707149-1.05739962841538]	NR [9572556] (imputed)	N
654	chr19	9137259	9137260	rs113660049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	19p13.2		rs113660049-?	NR	4E-8				NR [~ 8900000] (imputed)	N
654	chr19	9141158	9141159	rs7258329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	19p13.2		rs7258329-A	NR	2E-10		0.0492	[0.034-0.064] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
654	chr19	9141158	9141159	rs7258329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	19p13.2		rs7258329-A	0.375289951	2E-10		0.095479585	[0.066-0.125] unit increase	Illumina [13429513] (imputed)	N
655	chr19	9185528	9185529	rs4581824	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	19p13.2	NR	rs4581824-G		3E-6		0.0701	[0.036-0.104] SD units increase	NR [10700000] (imputed)	N
655	chr19	9213650	9213651	rs62621389	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	19p13.2	OR7G2	rs62621389-?		2E-13		5.3	[3.4-8.4]	Illumina [NR] (imputed)	N
655	chr19	9219600	9219601	rs11882292	30610202	Ruderfer DM	2019-01-04	Mol Psychiatry	Significant shared heritability underlies suicide attempt and clinically predicted probability of attempting suicide.	Predicted suicide risk	24,546 European ancestry individuals	NA	19p13.2		rs11882292-A	0.68	4E-8		0.064	unit decrease	Illumina [~ 9000000] (imputed)	N
657	chr19	9498618	9498618	rs35915221	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	AC011451.3	rs35915221-CA	0.5866	3E-12		0.0134	[0.0097-0.0171] unit increase	Affymetrix [18391927] (imputed)	N
657	chr19	9537166	9537167	rs56233004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.2	NR	rs56233004-A	0.566426	4E-10		0.012647	[0.0087-0.0166] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
658	chr19	9652668	9652669	rs145467880	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.2	ZNF426	rs145467880-A	0.00977041174939598	8E-7	(F_Sutterellaceae_HB)	1.83447	[1.11-2.56] unit decrease	Illumina [7711310] (imputed)	N
659	chr19	9734166	9734167	rs77180504	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	19p13.2	ZNF561	rs77180504-?	NR	6E-6		14.9	[3.99-55.6]	Illumina [654642] (imputed)	N
660	chr19	9918228	9918229	rs7246760	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	19p13.2	FBXL12	rs7246760-A	0.06349	5E-6	(EA)			Illumina [4404269] (imputed)	N
660	chr19	9933388	9933389	rs60488035	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	19p13.2	NR	rs60488035-G	0.04048	6E-6		1.154	NR unit increase	Affymetrix [3101376] (imputed)	N
660	chr19	9942122	9942123	rs34786000	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	19p13.2	UBL5	rs34786000-G	0.446681	3E-9		0.02787433	[0.019-0.037] SD units decrease	NR [9926106] (imputed)	N
660	chr19	9942261	9942262	rs10421649	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	19p13.2	NR	rs10421649-A	NR	6E-13		0.906	unit increase	Affymetrix [14661600] (imputed)	N
660	chr19	9943263	9943264	rs551471509	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	19p13.2		rs551471509-T	0.9996	1E-8		0.17583662	[0.096790635-0.319437077]	Affymetrix, Illumina [NR] (imputed)	N
660	chr19	9950126	9950127	rs8104651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.2		rs8104651-?	NR	2E-10				NR [~ 8900000] (imputed)	N
660	chr19	9950126	9950127	rs8104651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.2		rs8104651-T	0.5596	8E-13	(conditional-joint)	0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
660	chr19	9955920	9955920	rs3837946	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration)	88,411 European ancestry individuals	NA	19p13.2		rs3837946-TTTTG	0.475	1E-11		0.032	unit decrease	Affymetrix [8951705] (imputed)	N
660	chr19	9955920	9955920	rs3837946	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Light-intensity physical activity duration	88,411 European ancestry individuals	NA	19p13.2		rs3837946-TTTTG	0.475	2E-9		0.029	unit decrease	Affymetrix [8951705] (imputed)	N
660	chr19	9959013	9959014	rs2287838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19p13.2		rs2287838-?	NR	2E-8				NR [~ 8900000] (imputed)	N
660	chr19	9959013	9959014	rs2287838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.2		rs2287838-A	0.5504	1E-13		0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
660	chr19	9959013	9959014	rs2287838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.2	Intergenic	rs2287838-A	0.5504	7E-13	(MTAG)	0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
660	chr19	9959013	9959014	rs2287838	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	19p13.2	PIN1	rs2287838-?	NR	1E-7	(EA)	2.21	[1.41-3.01] unit decrease	Affymetrix, Illumina [2033301]	N
661	chr19	9968433	9968434	rs2303100	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	19p13.2	OLFM2	rs2303100-C	0.447	1E-10		0.03	[0.02-0.04] SD units decrease	NR [9926106] (imputed)	N
661	chr19	9991734	9991735	rs8112411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.2		rs8112411-?	NR	4E-31				NR [~ 8900000] (imputed)	N
661	chr19	9995866	9995867	rs889122	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	19p13.2	OLFM2, RDH8	rs889122-G	0.72	2E-13		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
661	chr19	10000321	10000322	rs1862471	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	19p13.2	OLFM2	rs1862471-?	NR	1E-6				Illumina [12039492]	N
661	chr19	10000321	10000322	rs1862471	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	19p13.2	OLFM2	rs1862471-G	0.47	2E-7		2.0	[1.22-2.78] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
661	chr19	10000924	10000925	rs12979274	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	OLFM2	rs12979274-T	0.4845	3E-16		0.0155	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
661	chr19	10026549	10026550	rs4804474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs4804474-?	NR	1E-8				NR [~ 8900000] (imputed)	N
661	chr19	10056319	10056320	rs80076900	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs80076900-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
661	chr19	10056319	10056320	rs80076900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs80076900-?	NR	4E-10				NR [~ 8900000] (imputed)	N
661	chr19	10058806	10058807	rs11669788	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLFM2	5,364 Icelandic ancestry individuals	NA	19p13.2		rs11669788-T	0.3511	1E-293		0.652169	[0.62-0.69] unit increase	Illumina [7506463] (imputed)	N
661	chr19	10061959	10061960	rs56243392	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	OLFM2	rs56243392-A	0.65125	6E-157	(OLFM2, 8295_16_3)	0.67258966	[0.63-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
661	chr19	10069820	10069821	rs8108147	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.2	NR	rs8108147-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
661	chr19	10079092	10079093	rs3815746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLFM2	5,364 Icelandic ancestry individuals	NA	19p13.2		rs3815746-T	0.2485	3E-121		0.487533	[0.45-0.53] unit decrease	Illumina [7506463] (imputed)	N
662	chr19	10096688	10096689	rs8102756	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	19p13.2	NR	rs8102756-C	0.0678689	7E-6		1.1971033	[0.7-1.69] unit decrease	Illumina [at least 621854] (imputed)	N
662	chr19	10140656	10140657	rs191571564	33350037	Cheng CF	2020-12-22	J Gene Med	Genetic Risk Score Constructed from Common Genetic Variants is Associated with Cardiovascular Disease Risk in Type 2 Diabetes Mellitus.	Cardiovascular disease in type 2 diabetes	326 Han Chinese ancestry cases, 1,209 Han Chinese ancestry controls	68 Han Chinese ancestry cases, 317 Han Chinese ancestry controls	19p13.2	intergenic	rs191571564-T	NR	2E-6		4.72	[2.49-8.94]	Affymetrix, Illumina [NR] (imputed)	N
662	chr19	10178232	10178233	rs11880218	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19p13.2	C3P1	rs11880218-?		3E-7				Illumina [4322238] (imputed)	N
662	chr19	10190336	10190336	rs200997557	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	C3P1	rs200997557-CA	0.044	6E-20	(Protein C-ets-2, ETS2.12350.86.3)	0.64	[0.5-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
662	chr19	10196349	10196350	rs2232063	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	19p13.2	NR	rs2232063-?	NR	2E-6		0.01336	[0.0079-0.0189] unit decrease	Affymetrix [9658292] (imputed)	N
662	chr19	10213153	10213154	rs8109578	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	19p13.2	ANGPTL6	rs8109578-?	0.08	4E-7	(TSH)			Illumina [496032]	N
662	chr19	10218029	10218030	rs1551570	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	19p13.2	P2RY11, DNMT1	rs1551570-?	0.458	4E-10		1.32	[1.2-1.43]	Affymetrix [603382]	N
663	chr19	10229579	10229580	rs34658893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs34658893-C	NR	2E-11		0.0914	[0.065-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr19	10229579	10229580	rs34658893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs34658893-C	NR	3E-11		0.0899	[0.063-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr19	10233621	10233622	rs117952191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.2		rs117952191-?	NR	3E-9				NR [~ 8900000] (imputed)	N
663	chr19	10253760	10253761	rs78333947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs78333947-?	NR	8E-39				NR [~ 8900000] (imputed)	N
663	chr19	10310391	10310392	rs2116940	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	19p13.2	UBL5, ANGPTL6	rs2116940-G	0.19	3E-6	(AA-triglyceride response)	19.71	[11.4-28.02] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
663	chr19	10317762	10317763	rs11085720	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	19p13.2	DNMT1	rs11085720-A	0.435179	5E-7		0.014967	[0.0091-0.0208] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
663	chr19	10317762	10317763	rs11085720	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19p13.2	DNMT1	rs11085720-A	0.438291	7E-9		0.014546	[0.0096-0.0195] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
663	chr19	10320748	10320749	rs8104479	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	DNMT1	rs8104479-A	0.1506	9E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
663	chr19	10332546	10332547	rs55818584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.2		rs55818584-A	NR	5E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
663	chr19	10332546	10332547	rs55818584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.2	DNMT1, CTD-2369P2.2	rs55818584-A	NR	1E-8		0.0192991	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
663	chr19	10332546	10332547	rs55818584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	DNMT1, CTD-2369P2.2	rs55818584-A	NR	9E-9		0.019376	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
663	chr19	10332546	10332547	rs55818584	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.2	S1PR2	rs55818584-T	0.764068	3E-9		0.00359851	[0.0024-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
663	chr19	10332546	10332547	rs55818584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	CTD-2369P2.2	rs55818584-A	0.23582	2E-23		0.026751902	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10332546	10332547	rs55818584	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.2	NR	rs55818584-A	0.2312	3E-7		0.0122	[0.0075-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.2		rs10409243-T	NR	3E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
663	chr19	10332987	10332988	rs10409243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.2		rs10409243-T	NR	3E-12		0.0134	[0.0097-0.0171] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
663	chr19	10332987	10332988	rs10409243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.2		rs10409243-T	NR	1E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
663	chr19	10332987	10332988	rs10409243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.2		rs10409243-T	NR	8E-20		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
663	chr19	10332987	10332988	rs10409243	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p13.2	S1PR2	rs10409243-C	0.398384	2E-23		0.00232989	[0.0019-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
663	chr19	10332987	10332988	rs10409243	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19p13.2	S1PR2	rs10409243-C	0.398362	3E-20		0.00371342	[0.0029-0.0045] unit increase	Affymetrix [13995440] (imputed)	N
663	chr19	10332987	10332988	rs10409243	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19p13.2	S1PR2	rs10409243-C	0.4	2E-8		5.59	z-score increase	Affymetrix [4311822] (imputed)	N
663	chr19	10332987	10332988	rs10409243	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.2	S1PR2	rs10409243-C	0.4	1E-16		8.29	z-score increase	Affymetrix [4312306] (imputed)	N
663	chr19	10332987	10332988	rs10409243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.2	NR	rs10409243-T	0.601086	6E-26		0.021916	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
663	chr19	10332987	10332988	rs10409243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.2		rs10409243-?	NR	1E-17				NR [~ 8900000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs10409243-?	NR	4E-8				NR [~ 8900000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19p13.2	CTD-2369P2.2	rs10409243-T	0.6029	5E-9		0.02187366	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19p13.2	CTD-2369P2.2	rs10409243-T	0.6028	5E-9		0.02189254	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19p13.2	CTD-2369P2.2	rs10409243-T	0.6028	4E-9		0.02207318	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19p13.2	CTD-2369P2.2	rs10409243-T	0.6028	1E-9		0.02282543	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10332987	10332988	rs10409243	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19p13.2	CTD-2369P2.2	rs10409243-T	0.6028	7E-9		0.02169456	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10334442	10334443	rs2116941	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	19p13.2	chr19mb10	rs2116941-C	0.80902067	3E-8		0.2198	[0.14-0.3] unit decrease	Affymetrix [~ 9800000] (imputed)	N
663	chr19	10334662	10334663	rs2116942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.2		rs2116942-G	NR	1E-16		0.0201	[0.015-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
663	chr19	10334662	10334663	rs2116942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	S1PR2	rs2116942-G	0.603813	5E-9		0.014899487	[0.0099-0.0199] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334662	10334663	rs2116942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	S1PR2	rs2116942-G	0.603804	3E-10		0.015971579	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334662	10334663	rs2116942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	S1PR2	rs2116942-G	0.603769	4E-10		0.015815193	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334662	10334663	rs2116942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	S1PR2	rs2116942-G	0.603764	6E-11		0.016544709	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334662	10334663	rs2116942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs2116942-G	0.564288	5E-25				Affymetrix, Illumina [23114412] (imputed)	N
663	chr19	10334662	10334663	rs2116942	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.2	S1PR2	rs2116942-T	0.3977	7E-10		0.2156	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.2		rs117064827-G	NR	2E-11		0.0779	[0.055-0.101] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	5E-18		0.086649	[0.067-0.106] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	2E-23		0.100609	[0.081-0.12] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	2E-18		0.0888359	[0.069-0.108] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	7E-13		0.0700205	[0.05-0.09] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	1E-10		0.0669511	[0.047-0.087] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	19p13.2		rs117064827-?	NR	3E-26		0.105046	[0.085-0.125] unit decrease	NR [9800000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00967200000000001	5E-9		0.065826274	[0.044-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00966500000000003	4E-20		0.10543739	[0.083-0.128] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00966400000000001	1E-18		0.1011308	[0.079-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00966699999999998	1E-12		0.08099172	[0.059-0.103] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00965099999999996	9E-21		0.1066247	[0.084-0.129] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	S1PR2	rs117064827-G	0.00965199999999999	2E-20		0.10578037	[0.083-0.128] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs117064827-G	0.00813241	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
663	chr19	10334724	10334725	rs117064827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.2	NR	rs117064827-G	0.009659	4E-19		0.089062	[0.07-0.109] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
663	chr19	10334724	10334725	rs117064827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.2	S1PR2	rs117064827-G	0.0085	2E-9		0.1239822	[0.084-0.164] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10334724	10334725	rs117064827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.2	S1PR2	rs117064827-G	0.0085	4E-9		0.1210407	[0.081-0.161] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10338350	10338351	rs7246367	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs7246367-T	NR	2E-10		0.0371	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
663	chr19	10338763	10338764	rs4804496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.2		rs4804496-G	NR	8E-18		0.0219	[0.017-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
663	chr19	10338985	10338995	rs140658666	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.2	DNMT1, S1PR2	rs140658666-T	0.1718	1E-15		0.03780359	[0.029-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10340853	10340854	rs2033493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19p13.2		rs2033493-A	0.191	4E-11				Affymetrix [10369434] (imputed)	N
663	chr19	10340911	10340912	rs2288937	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.2	DNMT1, S1PR2	rs2288937-G	0.1724	3E-23		0.04712367	[0.038-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10342012	10342013	rs28693921	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.2	DNMT1, S1PR2	rs28693921-T	0.189	7E-26		0.0483876	[0.039-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10347031	10347032	rs8105174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.2	NR	rs8105174-T	NR	1E-11		0.0208	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr19	10347031	10347032	rs8105174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs8105174-T	NR	3E-56		0.0486	[0.043-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr19	10347031	10347032	rs8105174	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.2	NR	rs8105174-T	NR	3E-11		0.0203	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr19	10347083	10347084	rs8108722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	19p13.2		rs8108722-C	0.453569	8E-11		0.0224774	[0.016-0.029] unit decrease	Illumina [13478866] (imputed)	N
663	chr19	10347083	10347084	rs8108722	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	S1PR2, MRPL4	rs8108722-?		2E-10		0.0238	[0.017-0.031] unit decrease	Illumina [31500000] (imputed)	N
663	chr19	10347083	10347084	rs8108722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	NR	rs8108722-C	0.806109	8E-10		0.019374372	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10347083	10347084	rs8108722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.2		rs8108722-C	0.806117	8E-20		0.025611022	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10347083	10347084	rs8108722	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	19p13.2	S1PR2, MRPL4	rs8108722-?	NR	2E-8		0.022	[0.014-0.03] unit decrease	Illumina [6108953] (imputed)	N
663	chr19	10347469	10347479	rs201605619	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs201605619-C	0.55	2E-52	(Intercellular adhesion molecule 1, ICAM1.4342.10.3)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
663	chr19	10349625	10349626	rs557213785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	NR	rs557213785-C	0.192757	4E-21		0.029545525	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10349689	10349690	rs8113091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs8113091-?	NR	4E-30				NR [~ 8900000] (imputed)	N
663	chr19	10350648	10350649	rs8113613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	NR	rs8113613-T	0.187342	4E-21		0.029580873	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10350648	10350649	rs8113613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2		rs8113613-T	0.187312	4E-23		0.03087918	[0.025-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10350648	10350649	rs8113613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2		rs8113613-T	0.187306	1E-22		0.030579792	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
663	chr19	10350648	10350649	rs8113613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.2	intergenic	rs8113613-T	0.1876	3E-29		0.05171351	[0.043-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
663	chr19	10350648	10350649	rs8113613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.2	intergenic	rs8113613-T	0.1876	5E-30		0.05245495	[0.043-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10370541	10370542	rs11115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.2	MRPL4	rs11115-T	0.34046	4E-12		0.016395463	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10372309	10372310	rs11666499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.2		rs11666499-?	NR	4E-10				NR [~ 8900000] (imputed)	N
664	chr19	10372359	10372360	rs200688233	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	MRPL4, ICAM1	rs200688233-G		4E-8		0.314	unit decrease	Affymetrix [at least 2696785] (imputed)	N
664	chr19	10372964	10372965	rs12327774	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p13.2	MRPL4	rs12327774-C	0.825901	3E-14		0.00227448	[0.0017-0.0029] unit decrease	Affymetrix [13995440] (imputed)	N
664	chr19	10374951	10374952	rs141801008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.2	CTD-2369P2.5	rs141801008-T	0.00953199999999999	9E-12		0.07933281	[0.057-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10382536	10382537	rs5030390	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs5030390-A	NR	1E-24		0.0437	[0.035-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr19	10383402	10383403	rs117960796	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble ICAM-1	5,284 Finnish ancestry individuals	NA	19p13.2	ICAM1	rs117960796-A	0.012	8E-40		1.669	unit decrease	Illumina [NR] (imputed)	N
664	chr19	10391610	10391611	rs2358581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.2		rs2358581-G	NR	1E-26		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
664	chr19	10391610	10391611	rs2358581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	ICAM1, CTD-2369P2.5	rs2358581-G	0.733829	1E-15		0.022737637	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10391610	10391611	rs2358581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs2358581-G	0.665226	6E-39				Affymetrix, Illumina [24649327] (imputed)	N
664	chr19	10391610	10391611	rs2358581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.2	NR	rs2358581-G	0.73286	9E-38		0.028224	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
664	chr19	10391610	10391611	rs2358581	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	19p13.2	ICAM1	rs2358581-G	0.551	2E-6		1.7313019	[1.51-1.96]	Illumina [at least 656747] (imputed)	N
664	chr19	10392379	10392379	rs199957421	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	ICAM1	rs199957421-?	NR	5E-11		0.057726145	[0.04-0.075] unit decrease	Illumina [27896057] (imputed)	N
664	chr19	10392386	10392387	rs5030397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs5030397-?	NR	2E-9				NR [~ 8900000] (imputed)	N
664	chr19	10392789	10392790	rs5030398	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	ICAM4	rs5030398-C	0.92546875	2E-6	(ICAM4, 6550_4_3)	0.22579402	[0.13-0.32] unit increase	Illumina [> 1000000] (imputed)	N
664	chr19	10393233	10393234	rs5030377	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.2	ICAM1	rs5030377-A	0.620559	3E-11		0.0034921	[0.0025-0.0045] unit increase	Affymetrix [13995440] (imputed)	N
664	chr19	10394791	10394792	rs1799969	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	NR	rs1799969-?	NR	8E-36	(EA, Intercellular adhesion molecule 1)			Affymetrix [509946]	N
664	chr19	10394791	10394792	rs1799969	21533024	Pare G	2011-04-21	PLoS Genet	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry female individuals	9,813 individuals	19p13.2	ICAM1	rs1799969-A	0.11	1E-120		24.9	[NR] ng/mL decrease	Illumina [334295]	N
664	chr19	10394791	10394792	rs1799969	18604267	Pare G	2008-07-04	PLoS Genet	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry female individuals	2,008 European ancestry female individuals	19p13.2	ICAM1	rs1799969-A	0.12	4E-47		28.19	[NR] umol/L decrease	Illumina [336108]	N
664	chr19	10395682	10395683	rs5498	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.2		rs5498-A	0.575	4E-23				Affymetrix [10369434] (imputed)	N
664	chr19	10395682	10395683	rs5498	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.2		rs5498-A	0.575	3E-32				Affymetrix [10369434] (imputed)	N
664	chr19	10395682	10395683	rs5498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.2	ICAM1	rs5498-G	0.424904	1E-50		0.03458112	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10395682	10395683	rs5498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs5498-G	0.41684	1E-105				Affymetrix, Illumina [23472807] (imputed)	N
664	chr19	10395682	10395683	rs5498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.2	NR	rs5498-G	0.425749	6E-107		0.043577	[0.04-0.047] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
664	chr19	10395682	10395683	rs5498	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	ICAM1	rs5498-G	0.431	8E-1683	(Intercellular adhesion molecule 1, ICAM1.4342.10.3)	1.2	[1.18-1.22] unit decrease	Affymetrix [10572788] (imputed)	N
664	chr19	10395682	10395683	rs5498	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	ICAM4, ICAM5, ICAM1, CTD-2369P2.5, CTD-2369P2.8	rs5498-G	0.4322969	8E-267	(Intercellular adhesion molecule 1)	1.217	[1.17-1.27] unit decrease	Affymetrix [509946]	N
664	chr19	10395682	10395683	rs5498	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	ICAM4, ICAM5, ICAM1, CTD-2369P2.5, CTD-2369P2.8	rs5498-G	0.4322969	2E-32	(Intercellular adhesion molecule 5)	0.5107	[0.43-0.59] unit increase	Affymetrix [509946]	N
664	chr19	10395682	10395683	rs5498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.2	ICAM1	rs5498-G	0.4248	7E-30		0.04115269	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10395682	10395683	rs5498	21533024	Pare G	2011-04-21	PLoS Genet	Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci.	Soluble ICAM-1	22,435 European ancestry female individuals	9,813 individuals	19p13.2	ICAM1	rs5498-G	0.43	6E-89		13.8	[NR] ng/mL increase	Illumina [334295]	N
664	chr19	10395682	10395683	rs5498	18604267	Pare G	2008-07-04	PLoS Genet	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry female individuals	2,008 European ancestry female individuals	19p13.2	ICAM1	rs5498-A	0.43	5E-25		13.22	[NR] umol/L increase	Illumina [336108]	N
664	chr19	10397229	10397230	rs75407602	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	19p13.2		rs75407602-?	NR	9E-6		0.5674889	[0.32-0.82] unit increase	Illumina [9842460] (imputed)	N
664	chr19	10397229	10397230	rs75407602	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs75407602-T	0.059	8E-86	(Intercellular adhesion molecule 5, ICAM5.8245.27.3)	1.03	[0.93-1.13] unit decrease	Affymetrix [10572788] (imputed)	N
664	chr19	10397237	10397238	rs281437	18604267	Pare G	2008-07-04	PLoS Genet	Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women.	Soluble ICAM-1	4,570 European ancestry female individuals	2,008 European ancestry female individuals	19p13.2	ICAM1	rs281437-?	0.30	3E-10		10.1	[NR] umol/L increase	Illumina [336108]	N
664	chr19	10397402	10397403	rs3093030	20167578	Barbalic M	2010-02-18	Hum Mol Genet	Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels.	Soluble levels of adhesion molecules	Up to 9,813 European ancestry individuals	NA	19p13.2	ICAM-1	rs3093030-T	NR	4E-23	(ICAM)	4.15	[3.33-4.97] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
664	chr19	10400109	10400110	rs281439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,368 Icelandic ancestry individuals	NA	19p13.2		rs281439-G	0.2127	5E-216		0.66977	[0.63-0.71] unit decrease	Illumina [7506463] (imputed)	N
664	chr19	10400109	10400110	rs281439	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM5	5,366 Icelandic ancestry individuals	NA	19p13.2		rs281439-G	0.2127	1E-231		0.686338	[0.64-0.73] unit decrease	Illumina [7506463] (imputed)	N
664	chr19	10400109	10400110	rs281439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.2	NR	rs281439-C	0.7803640000000001	3E-8		0.00557645	[0.0036-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
664	chr19	10400109	10400110	rs281439	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.2	NR	rs281439-C	0.7803640000000001	5E-7		0.00602862	[0.0038-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
664	chr19	10400109	10400110	rs281439	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	ICAM5	rs281439-C	0.7934375	7E-103	(ICAM5, 8245_27_3)	0.6386293	[0.58-0.69] unit increase	Illumina [> 1000000] (imputed)	N
664	chr19	10400109	10400110	rs281439	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	ICAM5	rs281439-C	0.7934375	2E-111	(ICAM5, 5124_62_3)	0.6575437	[0.6-0.71] unit increase	Illumina [> 1000000] (imputed)	N
664	chr19	10400109	10400110	rs281439	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	ICAM5	rs281439-C	0.78	4E-152	(Intercellular adhesion molecule 5, ICAM5.5124.62.3)	0.72	[0.66-0.78] unit increase	Affymetrix [10572788] (imputed)	N
664	chr19	10400109	10400110	rs281439	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	ICAM5	rs281439-C	0.78	1E-262	(Intercellular adhesion molecule 5, ICAM5.8245.27.3)	0.89	[0.83-0.95] unit increase	Affymetrix [10572788] (imputed)	N
664	chr19	10400303	10400304	rs281440	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19p13.2	NR	rs281440-?	NR	7E-27	(sICAM-5)	0.3	[0.25-0.35] unit decrease	Illumina [4020654] (imputed)	N
664	chr19	10402130	10402131	rs901886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.2	ICAM5	rs901886-C	0.477682	9E-14		0.017399553	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10402130	10402131	rs901886	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19p13.2	NR	rs901886-?	NR	4E-27	(sICAM-5)			Illumina [~ 4000000] (imputed)	N
664	chr19	10402130	10402131	rs901886	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	ICAM1	rs901886-T	0.4703125	6E-614	(ICAM1, 4342_10_3)	1.0721264	[1.04-1.1] unit increase	Illumina [> 1000000] (imputed)	N
664	chr19	10402130	10402131	rs901886	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs901886-C	0.484	2E-171	(Intercellular adhesion molecule 5, ICAM5.8245.27.3)	0.62	[0.58-0.66] unit increase	Affymetrix [10572788] (imputed)	N
664	chr19	10402130	10402131	rs901886	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs901886-C	0.484	2E-100	(Intercellular adhesion molecule 5, ICAM5.5124.62.3)	0.49	[0.45-0.53] unit increase	Affymetrix [10572788] (imputed)	N
664	chr19	10403946	10403947	rs2569702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	19p13.2		rs2569702-?	NR	7E-9				NR [~ 8900000] (imputed)	N
664	chr19	10404226	10404227	rs2569703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	ICAM5	rs2569703-G	0.544421	3E-29		0.025531452	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10404226	10404227	rs2569703	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.2	ICAM5	rs2569703-G	0.5438	5E-14		0.02691358	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10405864	10405865	rs10402760	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs10402760-T	NR	9E-13		0.0338	[0.025-0.043] unit increase	Affymetrix [9000000] (imputed)	N
664	chr19	10406430	10406431	rs12972990	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.2		rs12972990-T	0.571	4E-31				Affymetrix [10369434] (imputed)	N
664	chr19	10406430	10406431	rs12972990	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19p13.2	ICAM5	rs12972990-?	NR	3E-7	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
664	chr19	10407853	10407854	rs34403566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.2		rs34403566-T	0.616	1E-18				Affymetrix [10369434] (imputed)	N
664	chr19	10408279	10408280	rs35136957	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19p13.2	ICAM5	rs35136957-C	0.3966	2E-11		0.02494058	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10408317	10408318	rs12150978	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19p13.2	NR	rs12150978-?	NR	5E-108	(sICAM-1)			Illumina [~ 4000000] (imputed)	N
664	chr19	10409322	10409323	rs150434441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.2		rs150434441-G	NR	3E-63		0.0405	[0.036-0.045] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
664	chr19	10412408	10412409	rs140735577	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	19p13.2	NR	rs140735577-?	NR	8E-6		0.0785	[0.044-0.113] unit decrease	Illumina [at least 560000] (imputed)	N
664	chr19	10416443	10416444	rs73510898	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19p13.2	ZGLP1, FDX1L	rs73510898-?	NR	8E-8	(Shared)			Affymetrix, Illumina [~ 5200000]	N
664	chr19	10426596	10426597	rs62640397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs62640397-C	NR	5E-11		0.0398	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr19	10426596	10426597	rs62640397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs62640397-C	NR	2E-9		0.0365	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr19	10427720	10427721	rs74956615	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	19p13.2		rs74956615-A	0.04778	5E-10		1.2663516	[1.1755088997465561-1.3642145475810288]	Affymetrix, Illumina [NR] (imputed)	N
664	chr19	10427720	10427721	rs74956615	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	19p13.2		rs74956615-A	0.04816	1E-11		1.4339889	[1.2926896399458667-1.5907330695298332]	Illumina [NR] (imputed)	N
664	chr19	10427720	10427721	rs74956615	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	19p13.2		rs74956615-?	NR	1E-6		0.4048036	[0.24-0.57] unit decrease	Illumina [9906551] (imputed)	N
664	chr19	10427720	10427721	rs74956615	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	19p13.2		rs74956615-?	NR	9E-6		0.3913596	[0.22-0.56] unit decrease	Illumina [9901720] (imputed)	N
664	chr19	10427720	10427721	rs74956615	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	1,676 European ancestry cases, 8,380 European ancestry controls	2,415 European, South Asian and Hispanic or Latin American ancestry cases, 477,741 European, South Asian and Hispanic or Latin American ancestry controls, 1,128 European ancestry cases, 679,531 European ancestry controls	19p13.2	TYK2	rs74956615-A	NR	2E-6		1.4	NR	Illumina [4700000] (imputed)	N
664	chr19	10427720	10427721	rs74956615	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	19p13.2	RAVER1	rs74956615-?	0.943	5E-10		1.3984058		Illumina [252970]	N
664	chr19	10427720	10427721	rs74956615	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	19p13.2	RAVER1	rs74956615-?	0.05	4E-15		1.3794171		Illumina [252970]	N
664	chr19	10427720	10427721	rs74956615	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	19p13.2	TYK2	rs74956615-A	NA	2E-17				Illumina [252970]	N
664	chr19	10427720	10427721	rs74956615	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.2	RAVER1, CTD-2369P2.12	rs74956615-A	0.056	2E-15		0.06337232	[0.048-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10427720	10427721	rs74956615	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.2	RAVER1	rs74956615-?	NR	2E-22	(subset analysis)			Illumina [130052]	N
664	chr19	10449357	10449358	rs7258015	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	19p13.2	ICAM3, TYK2	rs7258015-?		3E-8	(same effect)	1.18	[NR]	NR [at least 309839] (imputed)	N
664	chr19	10451919	10451920	rs61451658	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	19p13.2		rs61451658-?	NR	5E-8				Affymetrix [NR] (imputed)	N
664	chr19	10451919	10451920	rs61451658	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.2		rs61451658-C	0.688	3E-14				Affymetrix [10369434] (imputed)	N
664	chr19	10459968	10459969	rs35251378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.2	TYK2	rs35251378-A	0.292554	1E-23		0.026584754	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10459968	10459969	rs35251378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.2	TYK2	rs35251378-A	0.2942	2E-25		0.04131659	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10462512	10462513	rs11085725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	19p13.2		rs11085725-T	NR	1E-13		0.0697	[0.051-0.088] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
664	chr19	10462512	10462513	rs11085725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.2	TYK2	rs11085725-T	0.292126	3E-15		0.020346772	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10462512	10462513	rs11085725	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	19p13.2	TYK2	rs11085725-?	NR	3E-10		1.1363636	[1.09-1.2]	Illumina [6450125] (imputed)	N
664	chr19	10463117	10463118	rs34536443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	19p13.2		rs34536443-C	NR	3E-8		0.2367	[0.15-0.32] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
664	chr19	10463117	10463118	rs34536443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.2		rs34536443-C	NR	2E-22		0.0551	[0.044-0.066] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
664	chr19	10463117	10463118	rs34536443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19p13.2		rs34536443-C	NR	1E-12		0.1863	[0.13-0.24] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
664	chr19	10463117	10463118	rs34536443	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	19p13.2	NR	rs34536443-G		2E-25		1.38		NR [8016731] (imputed)	N
664	chr19	10463117	10463118	rs34536443	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	19p13.2	NR	rs34536443-G	NR	8E-29		1.41	NR	NR [8016731] (imputed)	N
664	chr19	10463117	10463118	rs34536443	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	19p13.2		rs34536443-C	NR	1E-15		0.68	[0.62-0.75]	NR [13810676] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.2	TYK2	rs34536443-C	0.04543	8E-35		0.0688871	[0.058-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.2	TYK2	rs34536443-C	0.045448	1E-30		0.06414211	[0.053-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	TYK2	rs34536443-C	0.045489	3E-15		0.0439958	[0.033-0.055] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.2	TYK2	rs34536443-C	0.04549	2E-13		0.04276783	[0.031-0.054] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs34536443-C	0.0461109	8E-37				Affymetrix, Illumina [24588908] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.2	NR	rs34536443-C	0.047983	1E-38		0.061607	[0.052-0.071] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	19p13.2	TYK2	rs34536443-G	0.956	8E-13		1.1764705	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
664	chr19	10463117	10463118	rs34536443	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	19p13.2	TYK2	rs34536443-G	0.0515	2E-11		1.45	[1.31-1.62]	Affymetrix, Illumina [9061522] (imputed)	N
664	chr19	10463117	10463118	rs34536443	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.2	TYK2	rs34536443-G	NR	3E-11		1.204	NR	Affymetrix, Illumina [8278136] (imputed)	N
664	chr19	10463117	10463118	rs34536443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19p13.2		rs34536443-?	NR	2E-13				NR [~ 8900000] (imputed)	N
664	chr19	10463117	10463118	rs34536443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	19p13.2		rs34536443-?	NR	4E-28				NR [~ 8900000] (imputed)	N
664	chr19	10463117	10463118	rs34536443	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	19p13.2	TYK2	rs34536443-G	0.95	5E-16	(EA)	0.38009	[0.29-0.47] unit increase	Illumina [8380626] (imputed)	N
664	chr19	10463117	10463118	rs34536443	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	19p13.2	TYK2	rs34536443-?	NR	2E-25		2.1276596	[1.75-2.63]	Illumina [at least 5000000] (imputed)	N
664	chr19	10463117	10463118	rs34536443	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.2	TYK2	rs34536443-C	0.0479	7E-13		0.06135247	[0.045-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10463117	10463118	rs34536443	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	19p13.2	TYK2	rs34536443-G	0.9527	1E-16		1.784	NR	Illumina [up to 11532644] (imputed)	N
664	chr19	10463117	10463118	rs34536443	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	19p13.2	TYK2	rs34536443-G	NR	6E-8	(EA)	1.5625	[1.32-1.82]	Illumina [128705]	N
664	chr19	10463117	10463118	rs34536443	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	19p13.2	TYK2	rs34536443-G	0.96	4E-15		1.4925373		Illumina [135870]	N
664	chr19	10463117	10463118	rs34536443	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	19p13.2	TYK2	rs34536443-C	0.96	3E-15		1.5151515	[1.37-1.67]	Illumina [133816] (imputed)	N
664	chr19	10463117	10463118	rs34536443	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	19p13.2	TYK2	rs34536443-G	0.95	5E-16	(EA)	1.46	[1.33-1.60]	Affymetrix, Illumina [up to 9739303] (imputed)	N
664	chr19	10463117	10463118	rs34536443	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19p13.2	TYK2	rs34536443-C	0.96	2E-14		1.29		Illumina [161311]	N
664	chr19	10463117	10463118	rs34536443	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	19p13.2	TYK2	rs34536443-?	0.95	1E-10	(additive model)	1.7857143	[1.49-2.13]	Illumina [123003]	N
664	chr19	10463117	10463118	rs34536443	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	19p13.2	TYK2, ICAM3, RAVER1	rs34536443-?	0.96	2E-14		1.6108247		Illumina [129464] (imputed)	N
664	chr19	10463117	10463118	rs34536443	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	19p13.2	TYK2, RAVER1, ICAM3	rs34536443-?	0.96	3E-13		1.4524329		Illumina [129464] (imputed)	N
664	chr19	10463117	10463118	rs34536443	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	19p13.2	TYK2	rs34536443-G	0.953	9E-31		1.88		Illumina [111236] (imputed)	N
664	chr19	10463117	10463118	rs34536443	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	19p13.2	TYK2	rs34536443-G	0.95	1E-12		1.91	[1.59-2.28]	Illumina [237619] (imputed)	N
664	chr19	10464842	10464843	rs35018800	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	19p13.2		rs35018800-?	NR	1E-16		0.0925185	[0.07-0.115] unit increase	NR [9800000] (imputed)	N
664	chr19	10464842	10464843	rs35018800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.2	TYK2	rs35018800-A	0.00801399999999997	2E-9		0.07553242	[0.051-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
664	chr19	10464842	10464843	rs35018800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	TYK2	rs35018800-A	0.00801099999999999	5E-17		0.10432634	[0.08-0.129] unit increase	Affymetrix [93095623] (imputed)	N
664	chr19	10464842	10464843	rs35018800	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.2	TYK2	rs35018800-?	NR	5E-12	(subset analysis)			Illumina [130052]	N
664	chr19	10466122	10466123	rs11085727	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	19p13.2		rs11085727-T	NR	1E-13		1.2	[1.18-1.31]	Illumina [NR] (imputed)	N
664	chr19	10466122	10466123	rs11085727	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	19p13.2	TYK2	rs11085727-T	0.291692	1E-15		0.080379486	[0.061-0.1] unit decrease	Affymetrix [7288503] (imputed)	N
664	chr19	10466122	10466123	rs11085727	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.2	TYK2	rs11085727-T	0.2934	4E-10		0.02456986	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
664	chr19	10466122	10466123	rs11085727	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	19p13.2	TYK2	rs11085727-C		1E-13		1.24	[NR]	Illumina [> 644674] (imputed)	N
664	chr19	10469918	10469919	rs55882956	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19p13.2	TYK2	rs55882956-A	0.029	1E-16		0.674	[0.58-0.77]	Illumina [11270530] (imputed)	N
664	chr19	10469974	10469975	rs12720356	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	19p13.2		rs12720356-?	NR	4E-9		0.05	NR unit increase	NR [5896510] (imputed)	N
664	chr19	10469974	10469975	rs12720356	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	19p13.2	NR	rs12720356-A	0.9	2E-8		0.86	[NR]	NR [8546065] (imputed)	N
664	chr19	10469974	10469975	rs12720356	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.2	TYK2	rs12720356-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
664	chr19	10469974	10469975	rs12720356	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.2	NR	rs12720356-C	0.08572	2E-11	(EA)	1.1656502	[1.12-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
664	chr19	10469974	10469975	rs12720356	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.2	NR	rs12720356-C	0.08572	4E-16	(EA)	1.1598983	[1.12-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
664	chr19	10469974	10469975	rs12720356	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.2	NR	rs12720356-C	0.08572	3E-11	(EA)	1.154103	[1.11-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
664	chr19	10469974	10469975	rs12720356	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	19p13.2	TYK2	rs12720356-A	0.91	4E-7	(conditioned on rs34536443)	1.2195122		Illumina [135870]	N
664	chr19	10469974	10469975	rs12720356	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	19p13.2	TYK2	rs12720356-A	0.91	3E-10	(conditioned on rs34536443)	1.25		Illumina [111236] (imputed)	N
664	chr19	10469974	10469975	rs12720356	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	19p13.2	ICAM3, TYK2, ICAM1	rs12720356-G	0.084	1E-12		1.12	[1.06-1.19]	Affymetrix, Illumina [953241] (imputed)	N
664	chr19	10469974	10469975	rs12720356	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	19p13.2	TYK2	rs12720356-A	0.90	4E-11		1.4	[1.23-1.61]	Illumina [535475]	N
664	chr19	10471461	10471462	rs8111359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.2	NR	rs8111359-C	0.904802	2E-19		0.0204451	[0.016-0.025] unit increase	Affymetrix [16578495] (imputed)	N
664	chr19	10471461	10471462	rs8111359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19p13.2	NR	rs8111359-C	0.904763	1E-35		0.0597743	[0.05-0.069] unit increase	Affymetrix [16580851] (imputed)	N
664	chr19	10471461	10471462	rs8111359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19p13.2	NR	rs8111359-C	0.904759	5E-10		0.0210898	[0.014-0.028] unit increase	Affymetrix [16583148] (imputed)	N
664	chr19	10471461	10471462	rs8111359	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19p13.2	NR	rs8111359-C	0.904645	8E-16		0.0343229	[0.026-0.043] unit increase	Affymetrix [16585745] (imputed)	N
664	chr19	10472932	10472933	rs280519	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	19p13.2	TYK2	rs280519-A	0.47	4E-9		1.13	[1.05-1.21]	Illumina [535475]	N
664	chr19	10475651	10475652	rs2304256	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	19p13.2		rs2304256-A	NR	4E-17		0.205245	[0.16-0.25] unit decrease	NR [5054572] (imputed)	N
664	chr19	10475651	10475652	rs2304256	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	19p13.2	TYK2	rs2304256-?	0.286	2E-12	(EA)	1.26	[NR]	NR [6344733] (imputed)	N
664	chr19	10475651	10475652	rs2304256	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	19p13.2	TYK2	rs2304256-C		4E-13		1.24	[1.17-1.31]	Illumina [644674]	N
664	chr19	10475651	10475652	rs2304256	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	19p13.2	TYK2	rs2304256-C	0.71	1E-10		1.2658228	NR	Illumina [1143634] (imputed)	N
664	chr19	10475651	10475652	rs2304256	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	19p13.2	TYK2	rs2304256-?	NR	1E-10				Affymetrix, Illumina [NR]	N
664	chr19	10475651	10475652	rs2304256	19966805	Wallace C	2009-12-06	Nat Genet	The imprinted DLK1-MEG3 gene region on chromosome 14q32.2 alters susceptibility to type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,840 European ancestry cases, 2,670 European ancestry controls, 5,766 European ancestry familial triads	19p13.2	TYK2	rs2304256-C	0.71	4E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [~ 2600000] (imputed)	N
664	chr19	10477066	10477067	rs34725611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	19p13.2		rs34725611-G	NR	4E-13		0.1636	[0.12-0.21] unit decrease	Affymetrix, Illumina [25844455] (imputed)	N
664	chr19	10477066	10477067	rs34725611	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	19p13.2	TYK2	rs34725611-?	NR	5E-23		1.2820514	[1.22-1.35]	Illumina [at least 5000000] (imputed)	N
664	chr19	10477066	10477067	rs34725611	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	19p13.2	TYK2	rs34725611-A	NR	2E-6		1.202	NR	Illumina [11532644] (imputed)	N
665	chr19	10491351	10491352	rs2304259	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	19p13.2	TYK2	rs2304259-?	NR	1E-6	(Gaussian-weighted model)			Illumina [501584]	N
665	chr19	10492273	10492274	rs144309607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.2		rs144309607-C	0.953	3E-25				Affymetrix [10369434] (imputed)	N
665	chr19	10492273	10492274	rs144309607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.2		rs144309607-C	0.953	4E-13				Affymetrix [10369434] (imputed)	N
665	chr19	10492273	10492274	rs144309607	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	19p13.2		rs144309607-?	NR	2E-7		0.5894346	[0.37-0.81] unit increase	Illumina [9875426] (imputed)	N
665	chr19	10497359	10497360	rs74428614	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Soluble ICAM-1	5,284 Finnish ancestry individuals	NA	19p13.2	ICAM1	rs74428614-A	0.163	1E-16		0.226	unit increase	Illumina [NR] (imputed)	N
665	chr19	10512910	10512911	rs11879191	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	19p13.2	CTD-2369P2.12, ICAM3, ZGLP1, CTD-2369P2.10, FDX1L, RAVER1, CDC37, PDE4A, KEAP1, TYK2	rs11879191-?		2E-11				Illumina [9725440] (imputed)	N
665	chr19	10512910	10512911	rs11879191	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	19p13.2	CTD-2369P2.12, ICAM3, ZGLP1, CTD-2369P2.10, FDX1L, RAVER1, CDC37, PDE4A, KEAP1, TYK2	rs11879191-?		3E-13				Illumina [9560910] (imputed)	N
665	chr19	10512910	10512911	rs11879191	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.2	NR	rs11879191-G	0.8	5E-20	(EA)	1.1537393	[1.12-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
665	chr19	10512910	10512911	rs11879191	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19p13.2	PPAN-P2RY11, TYK2, ICAM1	rs11879191-G	0.797	2E-18		1.136	[1.096-1.177]	Affymetrix, Illumina [1230000] (imputed)	N
665	chr19	10515803	10515804	rs3760650	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	19p13.2		rs3760650-T	NR	9E-6		0.0906736	[0.051-0.131] unit increase	NR [2787054] (imputed)	N
665	chr19	10520063	10520064	rs8112449	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	19p13.2	intergenic	rs8112449-T	NR	2E-6	(Males)	1.304	[NR]	NR [349184]	N
665	chr19	10520063	10520064	rs8112449	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.2	CDC37, TYK2	rs8112449-G	NR	1E-6		1.08	[1.07-1.1]	Illumina [465434]	N
665	chr19	10525180	10525181	rs35164067	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19p13.2	NR	rs35164067-?	NR	3E-20	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
665	chr19	10525180	10525181	rs35164067	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	19p13.2	TYK2	rs35164067-G	0.796	7E-9	(EA)	1.16		Illumina [128935]	N
665	chr19	10525180	10525181	rs35164067	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	19p13.2	TYK2	rs35164067-G	0.796	3E-10		1.14		Illumina [128935]	N
665	chr19	10525371	10525372	rs142770866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	CDC37	rs142770866-A	0.085117	1E-13		0.029904488	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
665	chr19	10526008	10526009	rs6511698	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19p13.2	CDC37, PDE4A	rs6511698-?		9E-6	(EA)	0.114695325	[0.064-0.165] unit decrease	Illumina [13620258] (imputed)	N
665	chr19	10526008	10526009	rs6511698	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19p13.2	CDC37, PDE4A	rs6511698-?		9E-6	(African American)	0.114695325	[0.064-0.165] unit decrease	Illumina [13620258] (imputed)	N
665	chr19	10556043	10556044	rs78854124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs78854124-A	NR	2E-9		0.0253	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
665	chr19	10562801	10562802	rs78064630	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	19p13.2		rs78064630-?	NR	5E-8				Affymetrix [NR] (imputed)	N
665	chr19	10568518	10568519	rs4804134	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	19p13.2	intergenic	rs4804134-?	0.69	3E-6		1.6666665	[1.35-2.08]	NR [~ 38000000] (imputed)	N
665	chr19	10568882	10568883	rs145530718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.2	PDE4A	rs145530718-C	0.01939	8E-9		0.048126478	[0.032-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
665	chr19	10577842	10577843	rs1051738	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.2	PDE4A	rs1051738-A	0.1723618	5E-13	(EA, Intercellular adhesion molecule 5)	0.4089	[0.3-0.52] unit decrease	Affymetrix [509946]	N
665	chr19	10577842	10577843	rs1051738	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19p13.2	PDE4A	rs1051738-?	NR	3E-14	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
665	chr19	10582962	10582963	rs11085734	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.2		rs11085734-G	0.502	2E-13				Affymetrix [10369434] (imputed)	N
665	chr19	10587595	10587596	rs62131887	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	19p13.2	TYK2	rs62131887-T	0.28	4E-7				Illumina [7347414] (imputed)	N
665	chr19	10592143	10592144	rs28834106	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.2	PDE4A	rs28834106-T	NR	4E-19		1.1171	NR	Affymetrix, Illumina [8278136] (imputed)	N
665	chr19	10596871	10596872	rs79817709	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	19p13.2	KEAP1	rs79817709-?	NR	5E-6				Illumina [7401356] (imputed)	N
665	chr19	10596871	10596872	rs79817709	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	19p13.2	KEAP1	rs79817709-?	NR	5E-6				Illumina [7401356] (imputed)	N
665	chr19	10596871	10596872	rs79817709	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	19p13.2	KEAP1	rs79817709-?	NR	5E-6		0.84	[NR] unit decrease	Illumina [1365181]	N
665	chr19	10596987	10596988	rs45524632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.2		rs45524632-A	NR	3E-12		0.0503	[0.036-0.064] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
665	chr19	10600417	10600418	rs35074907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19p13.2		rs35074907-?	NR	2E-9				NR [~ 8900000] (imputed)	N
665	chr19	10600417	10600418	rs35074907	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19p13.2	KEAP1	rs35074907-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
666	chr19	10625795	10625796	rs10416073	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals	NA	19p13.2	NR	rs10416073-A	0.057	2E-7		0.11	[0.07-0.15] unit increase	Illumina [6374524] (imputed)	N
666	chr19	10628040	10628041	rs10418435	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.2		rs10418435-A	0.056	3E-8				Affymetrix [10369434] (imputed)	N
666	chr19	10636963	10636964	rs549956721	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.2	S1PR5	rs549956721-A	0.971368	2E-10		0.0418698	[0.029-0.055] unit increase	Affymetrix [NR] (imputed)	N
666	chr19	10639532	10639533	rs12981279	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19p13.2	NR	rs12981279-?	NR	6E-8		0.0564	[0.036-0.077] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
666	chr19	10645610	10645610	rs386388546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.2		rs386388546-CTT	0.417623	3E-15		0.018509345	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10661198	10661199	rs73496517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs73496517-T	NR	7E-17		0.0353	[0.027-0.044] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10661198	10661199	rs73496517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs73496517-T	NR	4E-16		0.0345	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10661198	10661199	rs73496517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs73496517-T	NR	2E-11		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10665771	10665772	rs148813557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs148813557-T	NR	1E-12		0.1714	[0.12-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10665771	10665772	rs148813557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs148813557-T	NR	3E-11		0.1605	[0.11-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10666379	10666380	rs8113274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.2	KRI1	rs8113274-A	0.232141	1E-10		0.016949799	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10666449	10666450	rs6511703	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19p13.2		rs6511703-T	0.754	6E-10				Affymetrix [10369434] (imputed)	N
666	chr19	10666449	10666450	rs6511703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	KRI1	rs6511703-C	0.245871	5E-11		0.016968235	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10666449	10666450	rs6511703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.2	KRI1	rs6511703-C	0.245883	6E-12		0.017788468	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10666449	10666450	rs6511703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.2	KRI1	rs6511703-C	0.245887	2E-18		0.022675727	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10666449	10666450	rs6511703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs6511703-?	NR	4E-18				NR [~ 8900000] (imputed)	N
666	chr19	10669162	10669163	rs62128801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs62128801-G	NR	2E-9		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
666	chr19	10669162	10669163	rs62128801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs62128801-G	0.86	2E-8	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
666	chr19	10669162	10669163	rs62128801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs62128801-G	NR	5E-9		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
666	chr19	10669162	10669163	rs62128801	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs62128801-G	0.86	4E-8	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
666	chr19	10670350	10670351	rs45518133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs45518133-T	NR	3E-40		0.1387	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10670350	10670351	rs45518133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs45518133-T	NR	1E-49		0.1548	[0.13-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10670350	10670351	rs45518133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs45518133-T	NR	1E-43		0.145	[0.12-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10676940	10676941	rs3218221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.2	KRI1	rs3218221-A	0.00448099999999996	2E-13		0.12856418	[0.094-0.163] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10676940	10676941	rs3218221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.2	KRI1	rs3218221-A	0.00448199999999999	1E-19		0.15809537	[0.12-0.19] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10676940	10676941	rs3218221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs3218221-A	0.0045196	7E-16				Affymetrix, Illumina [19905671] (imputed)	N
666	chr19	10676940	10676941	rs3218221	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.2	NR	rs3218221-A	0.00457	6E-19		0.142718	[0.11-0.17] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
666	chr19	10677543	10677547	rs774469934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.2		rs774469934-G	NR	3E-10		0.1919	[0.13-0.25] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00121899999999997	3E-21		0.3176629	[0.25-0.38] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00121599999999999	5E-12		0.23038623	[0.16-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00120500000000001	3E-22		0.32890493	[0.26-0.4] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00120299999999995	1E-15		0.27339968	[0.21-0.34] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00121700000000002	2E-27		0.355595	[0.29-0.42] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10677543	10677547	rs774469934	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	CDKN2D	rs774469934-G	0.00121700000000002	4E-18		0.28933614	[0.22-0.35] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10678631	10678632	rs1465702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.2	NR	rs1465702-C	0.949616	7E-21		0.0412	[0.033-0.05] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
666	chr19	10679924	10679925	rs563423282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19p13.2		rs563423282-T	0.002006	3E-9		0.251369	[0.17-0.33] unit decrease	Illumina [13476299] (imputed)	N
666	chr19	10680733	10680734	rs892080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.2		rs892080-?	NR	1E-17				NR [~ 8900000] (imputed)	N
666	chr19	10680749	10680750	rs57307701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	KRI1, CDKN2D	rs57307701-A	0.950088	5E-15		0.0402403	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10680749	10680750	rs57307701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.2	KRI1, CDKN2D	rs57307701-A	0.9500762	5E-9		0.029775482	[0.02-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10680749	10680750	rs57307701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	KRI1, CDKN2D	rs57307701-A	0.9500603	2E-19		0.0457546	[0.036-0.055] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10680749	10680750	rs57307701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	KRI1, CDKN2D	rs57307701-A	0.9500772	7E-17		0.042395607	[0.032-0.052] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10680895	10680896	rs34511467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.2	KRI1, CDKN2D	rs34511467-C	0.183688	5E-13		0.02071961	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10682271	10682272	rs555455340	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19p13.2		rs555455340-C	0.990052	4E-8		0.112595	[0.072-0.153] unit increase	NR [11722792] (imputed)	N
666	chr19	10686769	10686769	rs553314025	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA		AP1M2	rs553314025-GT	0.456085	4E-15		0.01792973	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10686769	10686769	rs553314025	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA		AP1M2	rs553314025-GT	0.4573	2E-17		0.03128199	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
666	chr19	10686769	10686769	rs553314025	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA		AP1M2	rs553314025-GT	0.4574	1E-12		0.02596456	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
666	chr19	10687756	10687757	rs7252007	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.2	AP1M2	rs7252007-C	NR	5E-12		0.0378013	[0.027-0.049] unit decrease	Affymetrix [16832071] (imputed)	N
666	chr19	10693623	10693624	rs2360748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	AP1M2	rs2360748-C	0.194798	3E-25		0.029291961	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10693623	10693624	rs2360748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs2360748-T	0.798295	1E-38				Affymetrix, Illumina [22063850] (imputed)	N
666	chr19	10693623	10693624	rs2360748	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.2	NR	rs2360748-T	0.806036	6E-40		0.033093	[0.028-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
666	chr19	10693623	10693624	rs2360748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs2360748-?	NR	1E-33				NR [~ 8900000] (imputed)	N
666	chr19	10693627	10693628	rs2885056	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.2	AP1M2	rs2885056-A	0.1814	3E-15		0.03708877	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
666	chr19	10693942	10693943	rs4024546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs4024546-C	NR	9E-16		0.0441	[0.033-0.055] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10694719	10694720	rs11542916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs11542916-A	NR	9E-48		0.0712	[0.062-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10694719	10694720	rs11542916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs11542916-A	NR	2E-59		0.0798	[0.07-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10694719	10694720	rs11542916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs11542916-A	NR	2E-57		0.0785	[0.069-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10695349	10695357	rs148285494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.2	AP1M2	rs148285494-A	0.1923	8E-9		0.02640558	[0.017-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
666	chr19	10695958	10695959	rs2023335	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.2		rs2023335-A	0.056	4E-13		0.18	[-0.23--0.13] % decrease	Affymetrix [NR] (imputed)	N
666	chr19	10695958	10695959	rs2023335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	AP1M2	rs2023335-G	0.943456	9E-14		0.037082586	[0.027-0.047] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10695958	10695959	rs2023335	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.2	AP1M2	rs2023335-G	0.9433961	6E-12		0.03513754	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10695958	10695959	rs2023335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs2023335-G	0.946578	2E-20				Affymetrix, Illumina [24246363] (imputed)	N
666	chr19	10703155	10703156	rs149551327	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19p13.2	Intergenic	rs149551327-?		4E-6		1.9	[1.44-2.49]	Illumina [7645193] (imputed)	N
666	chr19	10707852	10707853	rs117831057	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs117831057-?	NR	3E-21		4.202	[3.33-5.07] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
666	chr19	10707891	10707892	rs4804512	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	19p13.2	SLC44A2	rs4804512-A	0.235082	2E-8		0.013661	[0.0088-0.0185] unit decrease	NR [16516521] (imputed)	N
666	chr19	10708691	10708692	rs8105074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs8105074-C	NR	5E-13		0.0217	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10708691	10708692	rs8105074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs8105074-C	NR	2E-14		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10708691	10708692	rs8105074	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs8105074-C	NR	8E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr19	10718870	10718871	rs144101543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.2	SLC44A2	rs144101543-T	0.096722	3E-10		0.02885326	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10724001	10724002	rs1865065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.2	SLC44A2	rs1865065-T	0.480396	8E-11		0.014805264	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10727236	10727237	rs8106542	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.2	SLC44A2	rs8106542-T	0.7807	8E-9		0.02517319	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr19	10727845	10727846	rs33959587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.2	SLC44A2	rs33959587-C	0.779926	6E-9		0.018922986	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10732662	10732663	rs8113212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	SLC44A2	rs8113212-G	0.73706	8E-18		0.021780195	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr19	10737580	10737581	rs28860769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	SLC44A2	rs28860769-A	NR	2E-10		0.0216942	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
666	chr19	10738638	10738639	rs3087969	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	SLC44A2	rs3087969-T	0.776592	7E-48		0.03955028	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10739593	10739594	rs11670384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs11670384-G	NR	5E-9		0.0181	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10739593	10739594	rs11670384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs11670384-G	NR	1E-13		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10739593	10739594	rs11670384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs11670384-G	NR	5E-12		0.0214	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
666	chr19	10740009	10740010	rs1036230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	SLC44A2	rs1036230-A	0.776169	3E-50		0.040535726	[0.035-0.046] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10740009	10740010	rs1036230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	SLC44A2	rs1036230-A	0.776147	4E-80		0.05115383	[0.046-0.056] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10740009	10740010	rs1036230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	SLC44A2	rs1036230-A	0.776161	1E-79		0.051059913	[0.046-0.056] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10740573	10740574	rs2360742	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	19p13.2	SLC44A2	rs2360742-?	NR	2E-9		0.02757	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
666	chr19	10740870	10740871	rs4548995	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	19p13.2	SCL44A2	rs4548995-C	NR	4E-19		1.1111112	[1.09-1.15]	Affymetrix, Illumina [12923718] (imputed)	N
666	chr19	10740870	10740871	rs4548995	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19p13.2	NR	rs4548995-?	NR	9E-19		0.1093	[0.085-0.134] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
666	chr19	10742169	10742170	rs2288904	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	19p13.2	SLC44A2	rs2288904-G	0.7853	4E-24		1.1233329	[1.10-1.15]	Affymetrix [up to 34000000] (imputed)	N
666	chr19	10742169	10742170	rs2288904	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	19p13.2	SLC44A2	rs2288904-G	0.785	3E-15		1.21	[1.16-1.28]	Affymetrix, Illumina [6751884] (imputed)	N
666	chr19	10742169	10742170	rs2288904	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19p13.2	SLC44A2	rs2288904-G	0.78	2E-11		1.1		Illumina [161311]	N
666	chr19	10742442	10742443	rs1560710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.2		rs1560710-T	0.658613	6E-32		0.0253203	[0.021-0.03] unit decrease	Illumina [13479295] (imputed)	N
666	chr19	10742442	10742443	rs1560710	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	SLC44A2	rs1560710-?	NR	2E-38		0.039557815	[0.034-0.046] unit decrease	Illumina [27896057] (imputed)	N
666	chr19	10742995	10742996	rs9797854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	SLC44A2	rs9797854-T	0.776973	3E-74		0.049135007	[0.044-0.054] unit increase	Affymetrix [93095623] (imputed)	N
666	chr19	10743125	10743126	rs9797861	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	19p13.2	SLC44A2	rs9797861-T	0.7601	6E-9		1.145	[1.093- 1.199]	Illumina [at least 560000] (imputed)	N
666	chr19	10745763	10745764	rs2163832	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.2	NR	rs2163832-?	NR	6E-13	(male)	0.26399	[0.19-0.34] unit decrease	Affymetrix [7794483] (imputed)	N
666	chr19	10745763	10745764	rs2163832	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.2	NR	rs2163832-?	NR	4E-16		0.18942	[0.14-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
667	chr19	10748120	10748121	rs3843751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.2		rs3843751-T	NR	5E-56		0.0213	[0.019-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
667	chr19	10748120	10748121	rs3843751	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	19p13.2	AP1M2, SLC44A2, ILF3-AS1, ILF3, QTRT1, DNM2, MIR638, MIR4748	rs3843751-T	0.676	5E-6		1.05622	[1.03-1.08]	NR [9372253] (imputed)	N
667	chr19	10748120	10748121	rs3843751	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	19p13.2		rs3843751-T	0.6642	6E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
667	chr19	10748120	10748121	rs3843751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs3843751-?	NR	6E-46				NR [~ 8900000] (imputed)	N
667	chr19	10749235	10749236	rs1560708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.2		rs1560708-C	NR	9E-19		0.0151	[0.012-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
667	chr19	10750114	10750115	rs572318396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	SLC44A2	rs572318396-TG	NR	7E-11		0.0196079	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
667	chr19	10750737	10750738	rs1560707	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	19p13.2	NR	rs1560707-T	0.37	1E-13		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
667	chr19	10752967	10752968	rs10405617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19p13.2		rs10405617-G	0.663875	7E-10		0.021503	[0.015-0.028] unit decrease	Illumina [13478928] (imputed)	N
667	chr19	10752967	10752968	rs10405617	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	19p13.2		rs10405617-A	0.3194	9E-11		1.0321046	[1.022239876-1.042064481]	Affymetrix, Illumina [NR] (imputed)	N
667	chr19	10754904	10754905	rs10948	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	SLC44A2	rs10948-T	0.6638	3E-36		0.0252	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
667	chr19	10765818	10765819	rs7250071	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	19p13.2	ILF3	rs7250071-T	0.63	2E-16		0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
667	chr19	10770304	10770305	rs7248205	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	19p13.2	NR	rs7248205-C	0.34	2E-8		0.93473	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
667	chr19	10770304	10770305	rs7248205	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	19p13.2	NR	rs7248205-?		3E-10		0.0139253	[0.0096-0.0183] unit increase	Affymetrix [19400418] (imputed)	N
667	chr19	10770304	10770305	rs7248205	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19p13.2	ILF3	rs7248205-T	0.6003	1E-12		1.0270597		Affymetrix [11880941] (imputed)	N
667	chr19	10771940	10771941	rs147622113	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	19p13.2		rs147622113-T	NR	1E-9		0.68	[0.6-0.77]	NR [13810676] (imputed)	N
667	chr19	10771940	10771941	rs147622113	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	19p13.2	ILF3	rs147622113-T	0.03	9E-10	(EA)	0.38854	[0.26-0.51] unit decrease	Illumina [8380626] (imputed)	N
667	chr19	10771940	10771941	rs147622113	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	19p13.2	ILF3	rs147622113-?	NR	7E-6		1.369863	[1.19-1.56]	Illumina [at least 5000000] (imputed)	N
667	chr19	10794629	10794630	rs2229383	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	19p13.2	ILF3, SLC44A2	rs2229383-?	NR	1E-7				NR [~ 8000000] (imputed)	N
667	chr19	10794629	10794630	rs2229383	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	19p13.2	ILF3, SLC44A2	rs2229383-?	NR	9E-7				NR [~ 8000000] (imputed)	N
667	chr19	10794629	10794630	rs2229383	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	19p13.2	ILF3, SLC44A2	rs2229383-?	NR	3E-8				NR [~ 8000000] (imputed)	N
667	chr19	10794629	10794630	rs2229383	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	19p13.2	ILF3	rs2229383-?	NR	4E-7				NR [~ 8000000] (imputed)	N
667	chr19	10798903	10798904	rs2569507	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.2	ILF3	rs2569507-G	0.406	7E-6	(TG )	0.02	[NR] mg/dL increase	Illumina [899892]	N
667	chr19	10799749	10799750	rs2742313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19p13.2		rs2742313-C	NR	1E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
667	chr19	10801184	10801185	rs8102380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19p13.2		rs8102380-?	NR	3E-8				NR [~ 8900000] (imputed)	N
667	chr19	10801184	10801185	rs8102380	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.2	ILF3	rs8102380-A	0.686	8E-11		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
667	chr19	10813363	10813364	rs4425006	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs4425006-?	NR	2E-13		1.754	[1.22-2.29] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
667	chr19	10817655	10817656	rs9807841	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19p13.2	QTRT1	rs9807841-?	NR	1E-10	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
667	chr19	10818091	10818092	rs892085	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	19p13.2	ILF3, CARM1	rs892085-A	NR	8E-7		1.114	NR	Illumina [up to 11532644] (imputed)	N
667	chr19	10818091	10818092	rs892085	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	19p13.2	ILF3, QTRT1	rs892085-A	0.566	2E-6		1.16	[1.09-1.23]	Illumina [up to 4778154] (imputed)	N
667	chr19	10818091	10818092	rs892085	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	19p13.2	ILF3, CARM1	rs892085-A	NR	3E-7		1.172	[1.103-1.245]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
667	chr19	10818091	10818092	rs892085	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	19p13.2	ILF3, CARM1	rs892085-A	0.558	3E-17		1.17		Illumina [111236] (imputed)	N
667	chr19	10819966	10819967	rs11085744	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	19p13.2	QTRT1	rs11085744-T	0.5595	3E-6		0.0111	[0.0064-0.0158] unit decrease	Affymetrix [19819130] (imputed)	N
667	chr19	10819966	10819967	rs11085744	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	19p13.2	QTRT1	rs11085744-T	0.5595	8E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
667	chr19	10819966	10819967	rs11085744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs11085744-?	NR	2E-9				NR [~ 8900000] (imputed)	N
667	chr19	10823939	10823940	rs11672431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs11672431-T	NR	2E-14		0.0417	[0.031-0.052] unit increase	Affymetrix [9000000] (imputed)	N
667	chr19	10823939	10823940	rs11672431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs11672431-T	NR	3E-13		0.0396	[0.029-0.05] unit increase	Affymetrix [9000000] (imputed)	N
667	chr19	10823939	10823940	rs11672431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs11672431-T	NR	3E-9		0.0324	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
667	chr19	10838485	10838486	rs11671653	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	19p13.2	DNM2	rs11671653-A	0.11	9E-7		0.1075	[0.065-0.15] unit increase	Affymetrix [~ 2740000] (imputed)	N
667	chr19	10842732	10842733	rs143928955	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19p13.2	NR	rs143928955-?	NR	2E-7		0.1304	[0.082-0.179] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
667	chr19	10859507	10859508	rs12459943	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	19p13.2	DNM2	rs12459943-A	0.36	5E-11		0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
667	chr19	10867851	10867852	rs10407127	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.2	DNM2	rs10407127-G	NR	3E-9		0.0171175	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
667	chr19	10867851	10867852	rs10407127	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.2	NR	rs10407127-T	NR	2E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr19	10867851	10867852	rs10407127	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs10407127-T	NR	1E-22		0.0239	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
667	chr19	10867851	10867852	rs10407127	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.2	NR	rs10407127-?	NR	7E-6		0.0078159	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
668	chr19	10881993	10881994	rs62131786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs62131786-G	NR	1E-10		0.0374	[0.026-0.049] unit increase	Affymetrix [9000000] (imputed)	N
668	chr19	10903971	10903972	rs11880613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	19p13.2		rs11880613-A	NR	3E-8		0.0613	[0.04-0.083] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
668	chr19	10904688	10904689	rs1610095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs1610095-G	0.558	3E-22	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
668	chr19	10904688	10904689	rs1610095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs1610095-G	0.558	2E-25	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
668	chr19	10910779	10910780	rs55660036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.2	DNM2	rs55660036-G	NR	4E-8		0.0164252	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
668	chr19	10915924	10915925	rs3826804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs3826804-G	NR	3E-66		0.0445	[0.039-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr19	10915924	10915925	rs3826804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs3826804-G	NR	2E-83		0.0501	[0.045-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr19	10915924	10915925	rs3826804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs3826804-G	NR	1E-11		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr19	10915924	10915925	rs3826804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs3826804-G	NR	5E-75		0.0476	[0.043-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
668	chr19	10916683	10916684	rs2287029	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Hyperlipidemia (time to event)	35,623 British ancestry cases, 247,248 British ancestry controls	NA	19p13.2	DNM2	rs2287029-?	NR	5E-8				NR [~ 24000000] (imputed)	N
668	chr19	10918356	10918357	rs113084827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs113084827-?	NR	4E-9				NR [~ 8900000] (imputed)	N
668	chr19	10928179	10928180	rs188428283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs188428283-?	NR	4E-13				NR [~ 8900000] (imputed)	N
668	chr19	10934093	10934094	rs77581414	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	19p13.2	NR	rs77581414-?	0.04	3E-7		6.07	[3.04-12.1]	Affymetrix, Illumina [~ 6000000] (imputed)	N
668	chr19	10961023	10961024	rs73009507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs73009507-G	NR	1E-11		0.0315	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
668	chr19	10961023	10961024	rs73009507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs73009507-G	NR	3E-14		0.0355	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
668	chr19	10961023	10961024	rs73009507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs73009507-G	NR	2E-13		0.0343	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
668	chr19	10990328	10990329	rs12710258	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19p13.2	NR	rs12710258-?	NR	6E-7		0.1876	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
668	chr19	10994401	10994402	rs4804540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs4804540-?	NR	2E-8				NR [~ 8900000] (imputed)	N
669	chr19	11019580	11019581	rs11667234	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19p13.2	NR	rs11667234-A	NR	3E-9		0.034	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11019580	11019581	rs11667234	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.2	NR	rs11667234-C	0.952463	5E-11		0.0302138	[0.021-0.039] unit decrease	NR [NR]	N
669	chr19	11023433	11023434	rs1529711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs1529711-T	NR	3E-30		0.0374	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11023433	11023434	rs1529711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs1529711-T	NR	2E-31		0.0382	[0.032-0.045] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11023433	11023434	rs1529711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs1529711-T	NR	3E-26		0.0348	[0.028-0.041] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11023433	11023434	rs1529711	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	19p13.2	CARM1	rs1529711-T	NR	3E-8				NR [2501549] (imputed)	N
669	chr19	11023433	11023434	rs1529711	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	19p13.2	CARM1, LDLR	rs1529711-T	NR	2E-8				NR [2501749] (imputed)	N
669	chr19	11027625	11027626	rs2304088	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2304088-C	NR	4E-18		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11027625	11027626	rs2304088	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2304088-C	0.696	1E-18	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11027625	11027626	rs2304088	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2304088-C	NR	9E-23		0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11027625	11027626	rs2304088	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs2304088-C	0.696	4E-23	(EA)	0.055	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11035383	11035384	rs118163475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs118163475-T	NR	2E-10		0.0753	[0.052-0.098] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11035383	11035384	rs118163475	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs118163475-T	NR	4E-11		0.0783	[0.055-0.101] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11043157	11043158	rs113439314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19p13.2		rs113439314-C	NR	2E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
669	chr19	11043243	11043244	rs113528897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.2		rs113528897-C	NR	1E-8		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
669	chr19	11046623	11046624	rs35018144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.2		rs35018144-?	NR	2E-11				NR [~ 8900000] (imputed)	N
669	chr19	11049577	11049578	rs74179959	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.2		rs74179959-G	0.294012	1E-9		0.014790477	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
669	chr19	11058261	11058262	rs73011343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.2	NR	rs73011343-G	0.270177	8E-11		0.01457	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
669	chr19	11077661	11077662	rs73011369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs73011369-A	NR	3E-9		0.0256	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11077661	11077662	rs73011369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs73011369-A	NR	7E-10		0.0266	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11085542	11085543	rs4804556	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs4804556-?	NR	2E-25		1.657	[1.32-2] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
669	chr19	11092138	11092139	rs11669133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs11669133-A	NR	1E-16		0.0468	[0.036-0.058] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11092138	11092139	rs11669133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs11669133-A	NR	1E-15		0.0453	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11092138	11092139	rs11669133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs11669133-A	NR	4E-14		0.043	[0.032-0.054] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11092138	11092139	rs11669133	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	19p13.2	SMARCA4	rs11669133-A	0.06	1E-8		0.1671	[0.11-0.22] unit decrease	Affymetrix [~ 2740000] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	6E-9		0.114426	[0.076-0.153] unit increase	NR [11722792] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	7E-9		0.113861	[0.075-0.152] unit increase	NR [11722792] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	5E-8		0.107906	[0.069-0.147] unit increase	NR [11722792] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	1E-8		0.111557	[0.073-0.15] unit increase	NR [11722792] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	3E-8		0.108884	[0.07-0.148] unit increase	NR [11722792] (imputed)	N
669	chr19	11097708	11097709	rs73013139	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19p13.2		rs73013139-C	0.988828	5E-8		0.107642	[0.069-0.146] unit increase	NR [11722792] (imputed)	N
669	chr19	11102595	11102596	rs77278227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs77278227-A	NR	9E-66		0.1102	[0.098-0.123] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11102595	11102596	rs77278227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs77278227-A	NR	3E-78		0.1205	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11102595	11102596	rs77278227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs77278227-A	NR	2E-67		0.1119	[0.099-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11122709	11122710	rs73013159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs73013159-T	NR	5E-123		0.1147	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11122709	11122710	rs73013159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs73013159-T	NR	6E-147		0.1255	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11122709	11122710	rs73013159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs73013159-T	NR	7E-135		0.1204	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr19	11126196	11126197	rs117210556	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs117210556-C	NR	6E-11		0.0307	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11126196	11126197	rs117210556	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs117210556-C	NR	4E-11		0.0311	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
669	chr19	11133271	11133272	rs17001095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs17001095-A	NR	5E-21		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11133271	11133272	rs17001095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs17001095-A	0.65	6E-18	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11133271	11133272	rs17001095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs17001095-A	NR	1E-24		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
669	chr19	11133271	11133272	rs17001095	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs17001095-A	0.65	6E-20	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	7E-10		0.115312	[0.079-0.152] unit decrease	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-12		0.136019	[0.098-0.174] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	9E-9		0.112376	[0.074-0.151] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	4E-12		0.136306	[0.098-0.175] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	5E-12		0.136533	[0.098-0.175] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	5E-14		0.144346	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	1E-12		0.137933	[0.1-0.176] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-10		0.122323	[0.085-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	4E-13		0.14332	[0.1-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-11		0.127466	[0.09-0.165] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988724	1E-8		0.105623	[0.069-0.142] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	8E-14		0.147183	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-9		0.111698	[0.075-0.149] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	4E-12		0.136485	[0.098-0.175] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	1E-14		0.147923	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	9E-12		0.134596	[0.096-0.173] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-9		0.112157	[0.075-0.149] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-12		0.131936	[0.095-0.169] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	1E-9		0.112027	[0.076-0.148] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	4E-14		0.147187	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-12		0.137194	[0.099-0.175] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-12		0.137441	[0.099-0.176] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	6E-14		0.144082	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	4E-13		0.141512	[0.1-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	6E-11		0.130406	[0.091-0.169] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-14		0.145113	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-11		0.132559	[0.094-0.171] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-11		0.13145	[0.093-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	7E-13		0.13749	[0.1-0.175] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	6E-9		0.108688	[0.072-0.145] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	2E-14		0.147788	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	6E-12		0.134817	[0.096-0.173] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73013176-T	0.988719	3E-13		0.140067	[0.1-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11147525	11147526	rs73013176	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.2	SMARCA4	rs73013176-C	0.0107678	1E-9		0.16580276	[0.11-0.22] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11147614	11147615	rs4804562	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs4804562-?	NR	5E-23		1.702	[1.36-2.04] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11148947	11148948	rs78157521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs78157521-?	NR	3E-21				NR [~ 8900000] (imputed)	N
670	chr19	11158054	11158055	rs4804564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs4804564-T	NR	3E-11		0.0309	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11158054	11158055	rs4804564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs4804564-T	NR	5E-15		0.0364	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11158054	11158055	rs4804564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs4804564-T	NR	6E-15		0.0362	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11159095	11159096	rs12052201	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs12052201-?	NR	4E-6		2.169821	[1.25-3.09] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11159095	11159096	rs12052201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs12052201-G	NR	2E-36		0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11159095	11159096	rs12052201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs12052201-G	0.754	4E-35	(EA)	0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11159095	11159096	rs12052201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs12052201-G	NR	7E-46		0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11159095	11159096	rs12052201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs12052201-G	0.754	4E-42	(EA)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11159448	11159449	rs77287598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs77287598-T	NR	5E-10		0.0325	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11159524	11159525	rs12052058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs12052058-T	NR	3E-129		0.0663	[0.061-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11159524	11159525	rs12052058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs12052058-T	NR	1E-155		0.0729	[0.068-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11159524	11159525	rs12052058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs12052058-T	NR	2E-146		0.0708	[0.066-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11161536	11161537	rs3786722	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs3786722-C	NR	1E-36		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11161536	11161537	rs3786722	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs3786722-C	0.754	2E-35	(EA)	0.068	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11161536	11161537	rs3786722	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs3786722-C	NR	3E-46		0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11161536	11161537	rs3786722	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs3786722-C	0.754	1E-42	(EA)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11163600	11163601	rs1122608	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	19p13.2	NR	rs1122608-G	0.77	5E-7		1.09	[1.06-1.13]	Affymetrix, Illumina [at least 119674] (imputed)	N
670	chr19	11163600	11163601	rs1122608	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	19p13.2		rs1122608-T	0.25	3E-11		2.51	[1.77-3.25] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		19p13.2		rs1122608-T	0.25	1E-14		2.71	[2.02-3.40] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	19p13.2	LDLR, SMARCA4	rs1122608-?		2E-11				Affymetrix, Illumina [up to 2500000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	19p13.2	LDLR, SMARCA4	rs1122608-?		3E-12				Affymetrix, Illumina [up to 2500000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	19p13.2	LDLR, SMARCA4	rs1122608-?	NR	3E-11		1.1364	[1.09-1.18]	Illumina [575000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	19p13.2	LDLR	rs1122608-G	0.77	1E-9		1.14	[1.09-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
670	chr19	11163600	11163601	rs1122608	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	19p13.2	LDLR	rs1122608-G	0.75	2E-9		1.15	[1.10-1.20]	Affymetrix [~ 2500000] (imputed)	N
670	chr19	11166162	11166163	rs75957461	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.2	SMARCA4	rs75957461-C	0.945909	7E-9		0.0176806	[0.012-0.024] unit decrease	Affymetrix [12370749]	N
670	chr19	11166475	11166476	rs3786723	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	19p13.2	SMARCA4	rs3786723-T	0.73	2E-9		1.05	[1.05-1.06]	Illumina [5167567] (imputed)	N
670	chr19	11169304	11169305	rs36049922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs36049922-C	NR	6E-15		0.0478	[0.036-0.06] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11169304	11169305	rs36049922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs36049922-C	NR	1E-14		0.0474	[0.035-0.059] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11169304	11169305	rs36049922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs36049922-C	NR	1E-12		0.0436	[0.032-0.056] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11170676	11170677	rs117490455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs117490455-G	NR	3E-10		0.0526	[0.036-0.069] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11170676	11170677	rs117490455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs117490455-G	NR	3E-14		0.0636	[0.047-0.08] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11170676	11170677	rs117490455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs117490455-G	NR	3E-13		0.0614	[0.045-0.078] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11173927	11173928	rs12609500	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.2	SMARCA4	rs12609500-C	NR	5E-9		1.0581	NR	Affymetrix, Illumina [8278136] (imputed)	N
670	chr19	11174624	11174625	rs8099996	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19p13.2	SMARCA4	rs8099996-?	NR	3E-6	(Atopic dermatitis)			Affymetrix, Illumina [~ 5200000]	N
670	chr19	11174934	11174935	rs8103309	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	19p13.2	SMARCA4, LDLR	rs8103309-?	NR	3E-8				NR [~ 8000000] (imputed)	N
670	chr19	11174934	11174935	rs8103309	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls	NA	19p13.2	SMARCA4, LDLR	rs8103309-?	NR	4E-7				NR [~ 8000000] (imputed)	N
670	chr19	11174934	11174935	rs8103309	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	19p13.2	SMARCA4, LDLR	rs8103309-?	NR	8E-8				NR [~ 8000000] (imputed)	N
670	chr19	11174934	11174935	rs8103309	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls	NA	19p13.2	SMARCA4, LDLR	rs8103309-?	NR	1E-6				NR [~ 8000000] (imputed)	N
670	chr19	11175822	11175823	rs56315738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs56315738-T	NR	2E-19		0.1109	[0.087-0.135] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11175822	11175823	rs56315738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs56315738-T	NR	2E-22		0.1201	[0.096-0.144] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11175822	11175823	rs56315738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs56315738-T	NR	5E-19		0.1104	[0.086-0.135] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11185918	11185919	rs10423733	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19p13.2	KANK2	rs10423733-?	NR	3E-428		0.1362	[0.13-0.14] unit decrease	Affymetrix [5701386] (imputed)	N
670	chr19	11187323	11187324	rs143020224	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.2	SMARCA4	rs143020224-C	0.881398	9E-605		0.169039	[0.16-0.18] unit increase	Affymetrix [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.2	SMARCA4	rs143020224-C	0.881431	2E-589		0.16537	[0.16-0.17] unit increase	Affymetrix [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	7E-19	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	5E-226				Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	4E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	3E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	2E-193	(EA)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	5E-213	(EA)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	5E-19	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	4E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	3E-12	(AA)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	2E-273				Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	8E-7	(AA)	5.986	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	7E-10	(Asian)	7.04	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	5E-16	(Hispanic)	6.784	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	4E-193		7.649	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	2E-172	(EA)	7.842	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	8E-12	(Hispanic)	6.898	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	3E-7	(AA)	5.684	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	3E-11	(Asian)	7.289	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	1E-96	(EA)	7.846	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	1E-119		7.479	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.2	SMARCA4, LDLR	rs143020224-G	NR	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11187323	11187324	rs143020224	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	intergenic	rs143020224-C	0.8693	1E-300		0.1619	[0.15-0.17] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
670	chr19	11187610	11187611	rs111989435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs111989435-A	0.880459	4E-8		0.0350496	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
670	chr19	11188116	11188117	rs55997232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	19p13.2		rs55997232-T	NR	2E-14		0.0939	[0.07-0.118] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
670	chr19	11188152	11188153	rs55791371	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	19p13.2		rs55791371-C	0.121	1E-9		0.081	[0.056-0.106] unit decrease	Affymetrix [812428]	N
670	chr19	11188152	11188153	rs55791371	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	19p13.2	intergenic	rs55791371-A	0.8868	2E-36		0.1157	[0.098-0.134] unit increase	Affymetrix [at least 7947838] (imputed)	N
670	chr19	11188152	11188153	rs55791371	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	19p13.2	LDLR	rs55791371-A	0.9	3E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [8600000] (imputed)	N
670	chr19	11188152	11188153	rs55791371	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	19p13.2	LDLR	rs55791371-?	NR	8E-17	(M-LDL-C/M-LDL-PL)	0.26	[0.2-0.32] unit decrease	Illumina [~ 7700000] (imputed)	N
670	chr19	11188163	11188164	rs56125973	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	19p13.2	SMARCA4, LDLR	rs56125973-C	0.118	4E-13				Affymetrix [28000000] (imputed)	N
670	chr19	11188246	11188247	rs56289821	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	19p13.2		rs56289821-A	0.127733433	6E-14		0.23819	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188246	11188247	rs56289821	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	19p13.2		rs56289821-A	0.128412088	6E-12		0.209073	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188246	11188247	rs56289821	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	19p13.2	LDLR	rs56289821-G	0.899622	4E-15		1.14	[1.11- 1.18]	Affymetrix, Illumina [8600000] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	8E-9		0.183216	[0.12-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	3E-12		0.221617	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	4E-13		0.229954	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	1E-13		0.234765	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	1E-13		0.235608	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-12		0.225398	[0.16-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-13		0.235299	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	6E-14		0.237653	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	3E-14		0.240422	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	6E-14		0.237878	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in IDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127851012	3E-14		0.241098	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small LDL particle concentration	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	5E-12		0.218941	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial serum total cholesterol	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	1E-10		0.205084	[0.14-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very small VLDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-11		0.215391	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	7E-9		0.183947	[0.12-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	2E-10		0.203191	[0.14-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	2E-13		0.232696	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127851012	5E-14		0.239144	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium LDL particle concentration	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	6E-13		0.228399	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large LDL particle concentration	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	3E-13		0.231296	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very small VLDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-11		0.215806	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-11		0.214872	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	6E-13		0.228293	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	3E-14		0.240421	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	19p13.2		rs112374545-T	0.127697132	1E-9		0.194655	[0.13-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial esterified cholesterol	4,348 individuals	NA	19p13.2		rs112374545-T	0.127438697	2E-10		0.205029	[0.14-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	1E-12		0.225788	[0.16-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	5E-14		0.239037	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127936623	4E-14		0.239662	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large LDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	9E-14		0.236382	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in IDL	4,348 individuals	NA	19p13.2		rs112374545-T	0.127851012	1E-13		0.235155	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	19p13.2		rs112374545-T	0.127907199	3E-13		0.231246	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large LDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	1E-13		0.224628	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	1E-13		0.225535	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128526416	6E-12		0.209754	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large LDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	8E-14		0.226975	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128925143	3E-14		0.230337	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128526416	1E-11		0.207355	[0.15-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large LDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	2E-13		0.224124	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128925143	1E-14		0.234923	[0.18-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	2E-13		0.222889	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128526416	2E-11		0.203287	[0.14-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large LDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	3E-14		0.230502	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128925143	1E-14		0.234619	[0.18-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol	4,734 individuals	NA	19p13.2		rs112374545-T	0.128716825	1E-10		0.195486	[0.14-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large LDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	2E-13		0.224148	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	19p13.2		rs112374545-T	0.128925143	1E-13		0.224561	[0.17-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	19p13.2		rs112374545-T	0.128788973	2E-13		0.223043	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11188898	11188899	rs112374545	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19p13.2	LDLR	rs112374545-C	0.891235	2E-17		1.11	[1.08-1.14]	NR [8126035] (imputed)	N
670	chr19	11188898	11188899	rs112374545	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs112374545-?	NR	6E-27		6.21015	[5.08-7.34] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11188898	11188899	rs112374545	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs112374545-?	NR	5E-33		6.222507	[5.2-7.24] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	NR	1E-173		0.185	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.896	2E-9	(Hispanic)	0.15	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.879	2E-158	(EA)	0.189	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.833	1E-8	(AA)	0.194	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	NR	3E-226		0.216	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.896	6E-14	(Hispanic)	0.188	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.879	2E-204	(EA)	0.22	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs112374545-C	0.833	6E-11	(AA)	0.223	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11188898	11188899	rs112374545	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	19p13.2	LDLR	rs112374545-C	0.89	7E-142		0.25	[0.23-0.27] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
670	chr19	11188898	11188899	rs112374545	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	19p13.2	LDLR	rs112374545-C	0.89	2E-113		0.217	[0.2-0.24] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
670	chr19	11189297	11189298	rs747875948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	19p13.2		rs747875948-CG	0.884879	4E-10		0.0393747	[0.027-0.052] unit increase	NR [11722792] (imputed)	N
670	chr19	11189298	11189299	rs200495339	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid plaque	Up to 21,540 European ancestry cases, up to 26,894 European ancestry controls	NA	19p13.2	LDLR	rs200495339-?	0.11	1E-8		0.1023	[0.067-0.137] unit decrease	Affymetrix, Illumina [8578107] (imputed)	N
670	chr19	11189763	11189764	rs73015011	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19p13.2	SMARCA4, LDLR	rs73015011-?		2E-7	(African American)	0.16858114	[0.11-0.23] unit decrease	Illumina [13620258] (imputed)	N
670	chr19	11189763	11189764	rs73015011	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs73015011-?	NR	1E-39		7.137767	[6.08-8.2] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11189763	11189764	rs73015011	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs73015011-?	NR	6E-49		7.191307	[6.23-8.15] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	NR	5E-181		0.19	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.985	4E-6	(East Asian)	0.308	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.897	9E-10	(Hispanic)	0.152	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.88	9E-160	(EA)	0.191	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.825	5E-11	(AA)	0.215	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	NR	1E-236		0.222	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.985	4E-6	(East Asian)	0.31	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.897	1E-14	(Hispanic)	0.193	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.88	1E-206	(EA)	0.222	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189763	11189764	rs73015011	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs73015011-T	0.825	1E-14	(AA)	0.252	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11189936	11189937	rs114821903	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs114821903-?	NR	4E-112		7.594	[6.9-8.28] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11190291	11190292	rs112032422	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	19p13.2		rs112032422-C	0.128514582	2E-8		0.171101	[0.11-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190291	11190292	rs112032422	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	19p13.2		rs112032422-C	0.128514582	2E-9		0.182152	[0.12-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	3E-46		0.0914742	[0.079-0.104] unit decrease	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	3E-40		0.0845007	[0.072-0.097] unit decrease	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	5E-43		0.0862721	[0.074-0.099] unit decrease	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885748	2E-8		0.0366407	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	5E-11		0.0415271	[0.029-0.054] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	4E-10		0.0364632	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885878	6E-33		0.0750183	[0.063-0.087] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	2E-10		0.0398316	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885878	1E-37		0.0805299	[0.068-0.093] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	9E-16		0.0517597	[0.039-0.064] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	5E-26		0.0693231	[0.056-0.082] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	1E-40		0.0848404	[0.072-0.097] unit increase	NR [11722792] (imputed)	N
670	chr19	11190480	11190481	rs77265569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs77265569-G	0.885835	9E-20		0.056113	[0.044-0.068] unit increase	NR [11722792] (imputed)	N
670	chr19	11190533	11190534	rs142158911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs142158911-G	0.883281	2E-15		0.0501444	[0.038-0.062] unit increase	NR [11722792] (imputed)	N
670	chr19	11190533	11190534	rs142158911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19p13.2		rs142158911-G	0.883297	8E-17		0.0508755	[0.039-0.063] unit increase	NR [11722792] (imputed)	N
670	chr19	11190533	11190534	rs142158911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19p13.2		rs142158911-G	0.883297	8E-17		0.0503532	[0.039-0.062] unit increase	NR [11722792] (imputed)	N
670	chr19	11190533	11190534	rs142158911	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs142158911-G	0.883297	1E-13		0.0461641	[0.034-0.058] unit increase	NR [11722792] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	3E-12		0.222513	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	4E-13		0.231715	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	3E-13		0.233199	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	1E-13		0.237245	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119174609	2E-13		0.2354	[0.17-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small LDL particle concentration	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	5E-12		0.220647	[0.16-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting serum total cholesterol	4,734 individuals	NA	19p13.2		rs142158911-A	0.119174609	1E-10		0.205258	[0.14-0.27] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	1E-9		0.194293	[0.13-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	3E-11		0.212734	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium LDL particle concentration	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	4E-13		0.230866	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	2E-11		0.213436	[0.15-0.28] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	8E-13		0.228081	[0.17-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	19p13.2		rs142158911-A	0.119322646	4E-10		0.199418	[0.14-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.119194883	9E-14		0.237468	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium LDL	4,734 individuals	NA	19p13.2		rs142158911-A	0.11925018	6E-14		0.239019	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.2		rs142158911-A	NR	2E-428		0.1611	[0.15-0.17] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
670	chr19	11190533	11190534	rs142158911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	19p13.2		rs142158911-A	NR	8E-18		0.0919	[0.071-0.113] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
670	chr19	11190533	11190534	rs142158911	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19p13.2		rs142158911-?	NR	4E-16		0.026284	[0.02-0.033] unit increase	NR [6912294] (imputed)	N
670	chr19	11190533	11190534	rs142158911	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19p13.2		rs142158911-G	0.885392	3E-17		0.026	[0.02-0.032] unit increase	NR [7250403] (imputed)	N
670	chr19	11190533	11190534	rs142158911	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.2	LDLR	rs142158911-A	0.114529	2E-8		0.05320513	[0.035-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11190533	11190534	rs142158911	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	19p13.2	LDLR	rs142158911-A	0.12	8E-9		0.355	[0.23-0.48] years increase	NR [up to 9000000] (imputed)	N
670	chr19	11190651	11190652	rs142130958	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	19p13.2	LDLR	rs142130958-A	0.11	7E-47	(Free cholesterol in large LDL)	0.24	[0.2-0.28] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
670	chr19	11190690	11190691	rs113190300	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs113190300-?	NR	5E-17		5.928029	[4.54-7.31] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11190690	11190691	rs113190300	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs113190300-?	NR	2E-21		6.022841	[4.78-7.26] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11190763	11190764	rs36005514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs36005514-A	NR	3E-40		0.0615	[0.052-0.071] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11190763	11190764	rs36005514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs36005514-A	NR	6E-44		0.0645	[0.055-0.074] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11190763	11190764	rs36005514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs36005514-A	NR	5E-37		0.059	[0.05-0.068] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11191196	11191197	rs114846969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19p13.2		rs114846969-A	NR	2E-8		0.1009	[0.065-0.136] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
670	chr19	11191196	11191197	rs114846969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	19p13.2		rs114846969-A	NR	3E-10		0.0964	[0.066-0.126] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
670	chr19	11191196	11191197	rs114846969	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	19p13.2	NR	rs114846969-A	0.1172	2E-252				Affymetrix, Illumina [at least 2500000] (imputed)	N
670	chr19	11191299	11191300	rs73015016	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	19p13.2	LDLR	rs73015016-A	0.117682	6E-15		0.095657304	[0.072-0.12] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11191299	11191300	rs73015016	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	19p13.2	LDLR	rs73015016-A	0.119006	6E-18		0.08979048	[0.069-0.11] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11191676	11191677	rs10402112	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small HDL	4,348 individuals	NA	19p13.2		rs10402112-A	0.13	6E-8		0.17	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
670	chr19	11191728	11191729	rs138294113	34601942	van Zuydam NR	2021-10-04	Circ Genom Precis Med	Genome-Wide Association Study of Peripheral Artery Disease.	Peripheral artery disease	12,086 European ancestry cases, 449,548 European ancestry controls	31,307 cases, 211,753 controls, 3,164 East Asian ancestry cases, 20,134 East Asian ancestry controls	19p13.2		rs138294113-C	0.11	7E-10		1.09	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11191728	11191729	rs138294113	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		19p13.2	LDLR	rs138294113-C	NR	3E-17		0.018598	[0.012-0.025] nmol/l increase	NR [19000000] (imputed)	N
670	chr19	11191728	11191729	rs138294113	31285632	Klarin D	2019-07-08	Nat Med	Genome-wide association study of peripheral artery disease in the Million Veteran Program.	Peripheral artery disease	24,009 European ancestry cases, 150,983 European ancestry controls, 5,373 African ancestry cases, 42,485 African ancestry controls, 1,925 Hispanic cases, 18,285 Hispanic controls	5,117 European ancestry cases, 389,291 European ancestry controls	19p13.2	LDLR	rs138294113-C	0.879	1E-10		1.09	[1.06-1.11]	Affymetrix [at least 20323458] (imputed)	N
670	chr19	11192192	11192193	rs61194703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19p13.2		rs61194703-T	NR	7E-119		0.1905	[0.17-0.21] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
670	chr19	11192192	11192193	rs61194703	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	19p13.2	SMARCA4, LDLR	rs61194703-?	NR	9E-34		0.101132	[0.085-0.117] unit decrease	Illumina [4804024] (imputed)	N
670	chr19	11192192	11192193	rs61194703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs61194703-?	NR	2E-24				NR [~ 8900000] (imputed)	N
670	chr19	11192225	11192226	rs7249753	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs7249753-C	NR	2E-32		0.0587	[0.049-0.068] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11192225	11192226	rs7249753	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs7249753-C	NR	8E-38		0.0636	[0.054-0.073] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11192225	11192226	rs7249753	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs7249753-C	NR	3E-36		0.0622	[0.052-0.072] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11192549	11192550	rs73015020	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73015020-G	0.879809	2E-59		0.0963659	[0.085-0.108] unit increase	NR [11722792] (imputed)	N
670	chr19	11192830	11192831	rs77140532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs77140532-A	0.879389	1E-52		0.0937309	[0.082-0.106] unit increase	NR [11722792] (imputed)	N
670	chr19	11192830	11192831	rs77140532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs77140532-A	0.879341	1E-27		0.0654318	[0.054-0.077] unit increase	NR [11722792] (imputed)	N
670	chr19	11192830	11192831	rs77140532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs77140532-A	0.879341	2E-25		0.0593475	[0.048-0.071] unit increase	NR [11722792] (imputed)	N
670	chr19	11192830	11192831	rs77140532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs77140532-A	0.879341	6E-13		0.0441725	[0.032-0.056] unit increase	NR [11722792] (imputed)	N
670	chr19	11192830	11192831	rs77140532	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs77140532-A	0.879341	1E-59		0.0970646	[0.085-0.109] unit increase	NR [11722792] (imputed)	N
670	chr19	11192876	11192876	rs375484700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs375484700-C	0.879742	4E-33		0.0732607	[0.061-0.085] unit decrease	NR [11722792] (imputed)	N
670	chr19	11192876	11192876	rs375484700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs375484700-C	0.879742	4E-74		0.107716	[0.096-0.119] unit increase	NR [11722792] (imputed)	N
670	chr19	11192876	11192876	rs375484700	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs375484700-C	0.879742	4E-21		0.0596922	[0.047-0.072] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	2E-74		0.108951	[0.097-0.121] unit decrease	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	3E-16		0.0465195	[0.035-0.058] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	6E-10		0.0352175	[0.024-0.046] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	2E-38		0.0765873	[0.065-0.088] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	2E-51		0.0894246	[0.078-0.101] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	5E-18		0.0490903	[0.038-0.06] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	4E-24		0.062082	[0.05-0.074] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs73015021-A	0.879342	2E-22		0.0558025	[0.045-0.067] unit increase	NR [11722792] (imputed)	N
670	chr19	11192914	11192915	rs73015021	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19p13.2	NR	rs73015021-G	0.121031	1E-14		0.023034	[0.017-0.029] unit increase	Affymetrix [16668957] (imputed)	N
670	chr19	11193948	11193949	rs10412048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs10412048-A	0.879101	1E-64		0.103713	[0.092-0.116] unit decrease	NR [11722792] (imputed)	N
670	chr19	11193948	11193949	rs10412048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs10412048-A	0.879101	1E-23		0.0618756	[0.05-0.074] unit increase	NR [11722792] (imputed)	N
670	chr19	11193948	11193949	rs10412048	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Disorders of lipid metabolism	4,988 Spanish ancestry individuals	NA	19p13.2	SMARCA4, LDLR	rs10412048-?		3E-10	(Disorders of lipid metabolism)	0.50094855	[0.34-0.66] unit decrease	Illumina [9499600] (imputed)	N
670	chr19	11193948	11193949	rs10412048	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	19p13.2	intergenic	rs10412048-G	0.1086	5E-25		0.18101913	[0.15-0.22] mg/dl decrease	Illumina [24111857] (imputed)	N
670	chr19	11195029	11195030	rs11668477	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs11668477-?	NR	3E-13		2.881061	[2.11-3.65] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11195029	11195030	rs11668477	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs11668477-?	NR	5E-16		2.880678	[2.19-3.58] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11195029	11195030	rs11668477	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	19p13.2	LDLR	rs11668477-G	0.18	2E-7		0.13	[0.08-0.17] mmol/l decrease	Illumina [329091]	N
670	chr19	11196269	11196270	rs114197570	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs114197570-?	NR	6E-29		0.768	[0.63-0.9] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11196269	11196270	rs114197570	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs114197570-?	NR	1E-32		0.853	[0.71-0.99] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11196269	11196270	rs114197570	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs114197570-?	NR	6E-29		33.86672	[27.92-39.81] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11196269	11196270	rs114197570	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs114197570-?	NR	1E-32		33.45555	[27.94-38.97] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11196269	11196270	rs114197570	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs114197570-C	NR	2E-6		0.601	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11196269	11196270	rs114197570	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs114197570-C	0.988	2E-6	(AA)	0.567	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11196269	11196270	rs114197570	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs114197570-C	NR	5E-8		0.716	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11196269	11196270	rs114197570	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs114197570-C	0.988	5E-8	(AA)	0.649	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11196356	11196357	rs139306531	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs139306531-?	NR	4E-51		0.196	[0.17-0.22] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11196356	11196357	rs139306531	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs139306531-?	NR	2E-63		0.222	[0.2-0.25] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11196651	11196652	rs368803408	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	19p13.2	LDLR	rs368803408-AT	0.851071	6E-11		1.11	[1.07-1.14]	NR [10903881] (imputed)	N
670	chr19	11196885	11196886	rs8106503	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	SMARCA4, LDLR	rs8106503-?		3E-76		0.191	[0.17-0.21] unit decrease	Illumina [31500000] (imputed)	N
670	chr19	11196885	11196886	rs8106503	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs8106503-?	NR	7E-129		7.236	[6.62-7.85] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11196885	11196886	rs8106503	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	intergenic	rs8106503-T	0.8354	2E-281		0.1334	[0.13-0.14] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880368	1E-60		0.101022	[0.089-0.113] unit decrease	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	6E-102		0.131011	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	1E-80		0.113741	[0.1-0.13] unit decrease	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	2E-79		0.113835	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	1E-83		0.122165	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	5E-80		0.11405	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	3E-96		0.125632	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	3E-105		0.136331	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	3E-107		0.135381	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	2E-28		0.0705827	[0.058-0.083] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs12151108-G	0.880323	2E-69		0.105079	[0.093-0.117] unit increase	NR [11722792] (imputed)	N
670	chr19	11197260	11197261	rs12151108	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	SMARCA4, LDLR	rs12151108-?		1E-100		0.2177	[0.2-0.24] unit increase	Illumina [31500000] (imputed)	N
670	chr19	11197260	11197261	rs12151108	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	LDL cholesterol levels	14,126 African ancestry individuals	NA	19p13.2		rs12151108-G	0.81	2E-32		0.199902	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
670	chr19	11197597	11197598	rs73015024	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Total cholesterol levels	14,126 African ancestry individuals	NA	19p13.2		rs73015024-G	0.813	5E-22		0.165516	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-95		0.131562	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880627	5E-67		0.109602	[0.097-0.122] unit decrease	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	9E-11		0.0401942	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	7E-21		0.0582785	[0.046-0.07] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-30		0.070848	[0.059-0.083] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-25		0.0650146	[0.053-0.077] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-24		0.0628333	[0.051-0.075] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-44		0.0842453	[0.072-0.096] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-107		0.137206	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	7E-54		0.097011	[0.085-0.109] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-122		0.149174	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-66		0.108596	[0.096-0.121] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	7E-101		0.135675	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-69		0.10975	[0.097-0.122] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-121		0.14722	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-33		0.0750101	[0.063-0.087] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-118		0.146403	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-134		0.15142	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-114		0.141078	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	3E-28		0.0693638	[0.057-0.082] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-96		0.127818	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	6E-24		0.0603218	[0.049-0.072] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-128		0.152277	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-102		0.13235	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	5E-68		0.103581	[0.092-0.115] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	3E-21		0.059407	[0.047-0.072] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-130		0.153481	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	9E-49		0.0907384	[0.079-0.103] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880681	1E-81		0.121997	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-115		0.139008	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880627	2E-13		0.0454806	[0.033-0.058] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-104		0.135396	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	9E-94		0.130205	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	7E-139		0.15854	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-96		0.132415	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-107		0.140094	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-124		0.149586	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-53		0.0963131	[0.084-0.109] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	8E-125		0.150545	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-146		0.157878	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	3E-50		0.0926882	[0.081-0.105] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	2E-13		0.0459456	[0.034-0.058] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	1E-46		0.0896735	[0.077-0.102] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-118		0.146049	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-68		0.105071	[0.093-0.117] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880627	7E-46		0.0896033	[0.077-0.102] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-124		0.147532	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-120		0.148396	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-127		0.15169	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-114		0.144311	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-115		0.144491	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-129		0.150649	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-68		0.110142	[0.098-0.123] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-127		0.15061	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-135		0.152203	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880654	3E-12		0.0422616	[0.03-0.054] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-117		0.144145	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	4E-51		0.0941271	[0.082-0.106] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	9E-122		0.149189	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-89		0.126989	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-104		0.138391	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-144		0.16206	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-75		0.115679	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	7E-137		0.158071	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-144		0.160804	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-130		0.153469	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880627	1E-55		0.0957138	[0.084-0.108] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880572	2E-19		0.0577679	[0.045-0.07] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-140		0.154791	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-54		0.0971775	[0.085-0.109] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	6E-101		0.135293	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-108		0.140874	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-153		0.166152	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-91		0.129157	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-56		0.0994204	[0.087-0.112] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-115		0.143522	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-114		0.144498	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-111		0.142341	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-124		0.145396	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880627	4E-64		0.105149	[0.093-0.117] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880572	2E-8		0.0361451	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-138		0.154385	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-109		0.141255	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-119		0.147897	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	2E-142		0.161116	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	5E-101		0.135837	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	3E-120		0.14643	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	9E-129		0.148052	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19p13.2		rs147985405-G	0.880638	1E-138		0.158966	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
670	chr19	11197750	11197750	rs147985405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19p13.2		rs147985405-GA	NR	2E-522		0.1779	[0.17-0.18] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
670	chr19	11198186	11198187	rs17248720	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	19p13.2		rs17248720-T	0.118	1E-61		0.72		Affymetrix [15679186] (imputed)	N
670	chr19	11198779	11198780	rs17242346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs17242346-A	NR	7E-31		0.0573	[0.048-0.067] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11198779	11198780	rs17242346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs17242346-A	NR	6E-38		0.0638	[0.054-0.074] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11198779	11198780	rs17242346	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs17242346-A	NR	3E-35		0.0615	[0.052-0.071] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11200007	11200008	rs17249141	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs17249141-?	NR	1E-28		31.36066	[25.83-36.89] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11200007	11200008	rs17249141	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs17249141-?	NR	2E-32		30.93818	[25.82-36.06] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11200007	11200008	rs17249141	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	19p13.2	LDLR	rs17249141-T	0.0126	2E-17	(AA)	32.93	[NR] unit decrease	Affymetrix [NR]	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-12		0.0432981	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	3E-14		0.0469075	[0.035-0.059] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-10		0.0387767	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-17		0.0499243	[0.038-0.061] unit decrease	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-16		0.0505484	[0.039-0.063] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	7E-127		0.149341	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	4E-48		0.0891226	[0.077-0.101] unit decrease	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	1E-15		0.0491514	[0.037-0.061] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	3E-20		0.0546784	[0.043-0.066] unit decrease	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	5E-17		0.0513874	[0.039-0.063] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	9E-21		0.0574259	[0.045-0.069] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	1E-23		0.0613803	[0.049-0.073] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	8E-11		0.0396516	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-16		0.050527	[0.039-0.063] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-17		0.0498395	[0.038-0.061] unit decrease	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	1E-36		0.07837	[0.066-0.091] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs6511720-G	0.880212	2E-38		0.080434	[0.068-0.093] unit increase	NR [11722792] (imputed)	N
670	chr19	11202305	11202306	rs6511720	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.2	NR	rs6511720-T	0.0916534	4E-9		0.0192	[0.013-0.026] unit increase	Affymetrix [23037915] (imputed)	N
670	chr19	11202305	11202306	rs6511720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-T	NR	2E-13		0.0274	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-T	NR	2E-795		0.2209	[0.21-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-T	NR	1E-947		0.2412	[0.23-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-T	NR	9E-830		0.2262	[0.22-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-T	NR	2E-12		0.0271	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	19p13.2	LDLR	rs6511720-T	0.12	4E-9				NR [7320282]	N
670	chr19	11202305	11202306	rs6511720	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19p13.2		rs6511720-?	0.1189	1E-19		0.006662	unit increase	NR [6200000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-16	(M_LDL_PL)	0.10324599	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-16	(L_LDL_PL)	0.10135487	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-15	(Serum_C)	0.08062974	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-13	(IDL_CE)	0.104253076	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	7E-17	(L_LDL_P)	0.096550606	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	7E-11	(S_VLDL_C)	0.0719728	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	7E-11	(EstC)	0.06811059	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	6E-11	(IDL_FC)	0.0785067	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-15	(M_LDL_CE)	0.095859036	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-15	(IDL_P)	0.10952825	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-14	(L_LDL_L)	0.09278883	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-12	(M_LDL_C)	0.09745307	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-11	(M_LDL_P)	0.078168415	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-13	(IDL_C)	0.105052166	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-13	(FreeC)	0.06765198	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-12	(XS_VLDL_CE)	0.07004761	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-10	(XS_VLDL_FC)	0.08001983	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-14	(S_LDL_CE)	0.09266109	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-14	(LDL_C)	0.10120659	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-13	(XS_VLDL_C)	0.082488984	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-12	(XS_VLDL_PL)	0.06278563	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-10	(XS_VLDL_P)	0.050988134	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-10	(S_LDL_FC)	0.07554484	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-10	(M_LDL_FC)	0.0921653	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-16	(L_LDL_C)	0.1108146	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-14	(S_LDL_C)	0.09928351	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-14	(IDL_PL)	0.084895104	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-12	(S_VLDL_CE)	0.08143609	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-11	(S_LDL_P)	0.070176594	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-11	(Remnant_C)	0.08854053	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-10	(S_LDL_L)	0.08894251	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-10	(L_LDL_TG)	0.085159294	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-9	(LDL_TG)	0.07113099	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-14	(IDL_L)	0.1081782	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-13	(L_LDL_FC)	0.081581	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-13	(L_LDL_CE)	0.098193124	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-11	(M_LDL_L)	0.10078893	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-8	(S_VLDL_C)	0.07916968	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-13	(L_LDL_PL)	0.10553941	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	9E-12	(M_LDL_P)	0.10126232	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	8E-11	(S_LDL_CE)	0.09614768	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	7E-7	(XS_VLDL_CE)	0.07294039	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	6E-11	(FreeC)	0.09695939	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	6E-10	(Remnant_C)	0.09110192	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	5E-11	(M_LDL_PL)	0.09732649	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-7	(XS_VLDL_FC)	0.075056225	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-13	(IDL_L)	0.10768953	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	4E-10	(Serum_C)	0.092566125	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-9	(S_VLDL_CE)	0.08800753	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-8	(S_LDL_FC)	0.08183787	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-12	(LDL_C)	0.103151366	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-12	(IDL_FC)	0.10311841	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-11	(M_LDL_C)	0.098777965	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-10	(S_LDL_L)	0.09346392	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	3E-10	(M_LDL_FC)	0.0929593	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-8	(L_LDL_TG)	0.083168514	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-7	(XS_VLDL_C)	0.07655765	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-13	(L_LDL_L)	0.109274596	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-13	(L_LDL_CE)	0.10893973	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-13	(L_LDL_C)	0.1085456	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-13	(IDL_PL)	0.10908367	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-13	(IDL_P)	0.10875342	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-12	(IDL_CE)	0.1036042	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-11	(M_LDL_CE)	0.099115185	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-10	(S_LDL_P)	0.094097905	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	2E-10	(S_LDL_C)	0.09469219	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-9	(EstC)	0.08925601	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-8	(XS_VLDL_P)	0.06998695	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-7	(LDL_TG)	0.07788586	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-13	(L_LDL_P)	0.10977137	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-12	(L_LDL_FC)	0.10483017	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-12	(IDL_C)	0.104555786	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-11	(M_LDL_L)	0.10078893	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs6511720-?	NR	1E-10	(XS_VLDL_PL)	0.07644577	NR unit decrease	Illumina [609262]	N
670	chr19	11202305	11202306	rs6511720	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	19p13.2	NR	rs6511720-C		3E-9				Illumina [458865]	N
670	chr19	11202305	11202306	rs6511720	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19p13.2	NR	rs6511720-?	NR	8E-15		0.163	[0.12-0.2] unit decrease	Illumina [1770809] (imputed)	N
670	chr19	11202305	11202306	rs6511720	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19p13.2	NR	rs6511720-?	NR	2E-18		0.198	[0.15-0.24] unit decrease	Illumina [1770809] (imputed)	N
670	chr19	11202305	11202306	rs6511720	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs6511720-?	NR	3E-35		7.146288	[6.01-8.28] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11202305	11202306	rs6511720	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs6511720-?	NR	1E-44		7.27723	[6.26-8.29] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11202305	11202306	rs6511720	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.2	LDLR	rs6511720-T	0.117712	8E-116		0.19864713	[0.18-0.22] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11202305	11202306	rs6511720	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19p13.2		rs6511720-T	0.1146	1E-91		6.0191	[5.44-6.6] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
670	chr19	11202305	11202306	rs6511720	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Total cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	19p13.2	LDLR	rs6511720-?	NR	2E-6	(Indian)			Illumina [551825]	N
670	chr19	11202305	11202306	rs6511720	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Low density lipoprotein cholesterol levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	19p13.2	LDLR	rs6511720-?	NR	1E-7	(Indian)			Illumina [551825]	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	NR	7E-176		0.195	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.986	2E-6	(East Asian)	0.33	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.9	1E-9	(Hispanic)	0.153	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.885	2E-156	(EA)	0.195	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.869	7E-9	(AA)	0.217	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	NR	1E-230		0.227	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.986	1E-6	(East Asian)	0.34	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.9	5E-15	(Hispanic)	0.198	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.885	2E-202	(EA)	0.228	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs6511720-G	0.869	1E-11	(AA)	0.255	unit increase	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	19p13.2	LDLR	rs6511720-G	0.881	2E-6		0.0165	[0.0096-0.0234] unit increase	Affymetrix [11535925] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19p13.2	LDLR	rs6511720-T	0.1167	5E-41		0.1359	[0.12-0.16] unit decrease	NR [8041861] (imputed)	N
670	chr19	11202305	11202306	rs6511720	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.2	LDLR	rs6511720-T	0.117	5E-41		0.136	[0.12-0.16] unit decrease	Affymetrix [7947838] (imputed)	N
670	chr19	11202305	11202306	rs6511720	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	19p13.2	LDLR	rs6511720-T	0.083	2E-6		3.75	[2.20-5.30] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
670	chr19	11202305	11202306	rs6511720	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	19p13.2	LDLR	rs6511720-G	0.884	8E-22		1.14	[1.11-1.17]	Affymetrix [9149595] (imputed)	N
670	chr19	11202305	11202306	rs6511720	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	19p13.2	LDLR	rs6511720-T	0.096	8E-14		1.24	[1.18-1.32]	Affymetrix, Illumina [5363770] (imputed)	N
670	chr19	11202305	11202306	rs6511720	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	up to 4,420 African ancestry individuals	19p13.2	LDLR	rs6511720-?	0.13	3E-115				NR [NR] (imputed)	N
670	chr19	11202305	11202306	rs6511720	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	LDLR	rs6511720-T	0.12	4E-262		0.221	[NR] unit decrease	NR [NR] (imputed)	N
670	chr19	11202305	11202306	rs6511720	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	LDLR	rs6511720-T	0.12	5E-202		0.185	[NR] unit decrease	NR [NR] (imputed)	N
670	chr19	11202305	11202306	rs6511720	24046328	Bradley DT	2013-09-17	Circ Cardiovasc Genet	A variant in LDLR is associated with abdominal aortic aneurysm.	Abdominal aortic aneurysm	1,755 European ancestry cases, 5,314 European ancestry controls	1,658 European ancestry cases, 28,962 European ancestry controls, 1,725 cases, 3,791 controls	19p13.2	LDLR	rs6511720-?	0.901	2E-10		1.32	[1.20-1.43]	Illumina [503892]	N
670	chr19	11202305	11202306	rs6511720	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	19p13.2	LDLR	rs6511720-?	0.10	4E-9				Illumina [~ 2000000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	19p13.2	LDLR	rs6511720-T	0.10	3E-11	(Activity concentrations)	0.045	[0.031-0.059] unit decrease	Affymetrix, Illumina [2661766] (imputed)	N
670	chr19	11202305	11202306	rs6511720	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19p13.2	LDLR	rs6511720-T	0.11	5E-11	(LDL)	0.148	[0.10-0.19] mmol/l decrease	Illumina [NR] (imputed)	N
670	chr19	11202305	11202306	rs6511720	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	19p13.2	LDLR	rs6511720-T	NR	1E-7	(Plaque)	0.1778	[0.11-0.25] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	19p13.2	LDLR	rs6511720-T	0.144	7E-8		0.208	[0.13-0.28] unit decrease	Affymetrix [~ 2740000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19p13.2	LDLR	rs6511720-T	0.11	4E-117		6.99	[6.4-7.58] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19p13.2	LDLR	rs6511720-T	0.11	7E-97		7.09	[6.42-7.76] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	LDLR	rs6511720-?	NR	5E-25	(APOB.assay, whole)	4.516	[NR] unit decrease	Illumina [335603]	N
670	chr19	11202305	11202306	rs6511720	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	LDLR	rs6511720-?	NR	3E-18	(APOB.assay, fasting)	4.492	[NR] unit decrease	Illumina [335603]	N
670	chr19	11202305	11202306	rs6511720	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	LDLR	rs6511720-?	NR	2E-31	(LDL-C.assay, whole)	6.532	[NR] unit decrease	Illumina [335603]	N
670	chr19	11202305	11202306	rs6511720	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19p13.2	LDLR	rs6511720-?	NR	1E-25	(LDL-C.assay, fasting)	6.892	[NR] unit decrease	Illumina [335603]	N
670	chr19	11202305	11202306	rs6511720	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.2	LDLR	rs6511720-T	0.10	2E-26		0.26	[0.18-0.34] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
670	chr19	11202305	11202306	rs6511720	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19p13.2	LDLR	rs6511720-T	0.1	2E-51		0.26	[0.22-0.30] unit decrease	Affymetrix [389878]	N
670	chr19	11202305	11202306	rs6511720	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19p13.2	LDLR	rs6511720-G	0.90	4E-26		9.17	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
670	chr19	11206039	11206040	rs17248748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs17248748-T	NR	1E-15		0.0768	[0.058-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206039	11206040	rs17248748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs17248748-T	NR	1E-21		0.0918	[0.073-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206039	11206040	rs17248748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs17248748-T	NR	4E-21		0.0908	[0.072-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206574	11206575	rs6511721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs6511721-A	NR	2E-135		0.0593	[0.055-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206574	11206575	rs6511721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs6511721-A	NR	1E-166		0.0659	[0.061-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206574	11206575	rs6511721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs6511721-A	NR	5E-146		0.0617	[0.057-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11206574	11206575	rs6511721	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs6511721-?	NR	1E-28		2.438	[2-2.87] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11206574	11206575	rs6511721	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs6511721-?	NR	1E-35		2.599	[2.17-3.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11207515	11207516	rs73015030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs73015030-A	NR	4E-107		0.1404	[0.13-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11207515	11207516	rs73015030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs73015030-A	NR	7E-124		0.1512	[0.14-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11207515	11207516	rs73015030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs73015030-A	NR	3E-99		0.1354	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11207981	11207982	rs67337506	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19p13.2	SMARCA4, LDLR	rs67337506-C	0.25	3E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [13250765] (imputed)	N
670	chr19	11207981	11207982	rs67337506	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19p13.2	SMARCA4, LDLR	rs67337506-C	0.25	1E-13		0.017	[0.013-0.021] unit decrease	Affymetrix [13250765] (imputed)	N
670	chr19	11210911	11210912	rs2228671	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs2228671-?	NR	8E-11	(ApoB_ApoA1)	0.047192022	NR unit decrease	Illumina [609262]	N
670	chr19	11210911	11210912	rs2228671	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs2228671-?	NR	1E-11	(ApoB)	0.06746344	NR unit decrease	Illumina [609262]	N
670	chr19	11210911	11210912	rs2228671	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs2228671-?	NR	4E-6	(ApoB_ApoA1)	0.06773793	NR unit decrease	Illumina [609262]	N
670	chr19	11210911	11210912	rs2228671	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.2	LDLR	rs2228671-?	NR	2E-7	(ApoB)	0.07751194	NR unit decrease	Illumina [609262]	N
670	chr19	11210911	11210912	rs2228671	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs2228671-?	NR	1E-9		4.311789	[2.92-5.7] unit decrease	Illumina [32003504] (imputed)	N
670	chr19	11210911	11210912	rs2228671	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs2228671-?	NR	2E-13		4.626226	[3.39-5.86] unit decrease	Illumina [31808917] (imputed)	N
670	chr19	11210911	11210912	rs2228671	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19p13.2	LDLR	rs2228671-G	0.88	4E-14		0.14	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
670	chr19	11210911	11210912	rs2228671	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19p13.2	LDLR	rs2228671-G	0.88	9E-24		0.16	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
670	chr19	11213449	11213450	rs144172724	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	19p13.2		rs144172724-?	NR	3E-10		1.15073	[0.8-1.5] unit increase	NR [9800000] (imputed)	N
670	chr19	11214474	11214475	rs74257940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs74257940-G	NR	2E-14		0.0809	[0.06-0.102] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11214474	11214475	rs74257940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs74257940-G	NR	2E-17		0.0902	[0.069-0.111] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11214474	11214475	rs74257940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs74257940-G	NR	4E-16		0.0863	[0.066-0.107] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11216560	11216561	rs12983082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs12983082-C	NR	1E-29		0.0271	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11216560	11216561	rs12983082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs12983082-C	NR	5E-41		0.0322	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11216560	11216561	rs12983082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs12983082-C	NR	2E-38		0.0312	[0.026-0.036] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11216616	11216617	rs10422256	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs10422256-?	NR	1E-13		0.061	[0.045-0.077] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11216616	11216617	rs10422256	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs10422256-?	NR	4E-14		0.063	[0.047-0.079] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr19	11217314	11217315	rs200990725	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	LDL cholesterol levels	12,685 Chinese ancestry individuals	NA	19p13.2	LDLR	rs200990725-T	0.001	3E-8		0.91	[0.58-1.24] unit increase	Illumina [286795]	N
670	chr19	11218181	11218182	rs761765254	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	19p13.2		rs761765254-?	NR	6E-9		0.624815	[0.39-0.85] unit increase	NR [9800000] (imputed)	N
670	chr19	11218181	11218182	rs761765254	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	19p13.2		rs761765254-?	NR	2E-9		0.635601	[0.41-0.86] unit increase	NR [9800000] (imputed)	N
670	chr19	11221356	11221357	rs72658860	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	LDLR	rs72658860-A	0.014	3E-15	(AA)	0.196	[0.15-0.24] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
670	chr19	11222299	11222300	rs11669576	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	LDLR	rs11669576-?	NR	2E-9	(AA)	4.885776	[3.29-6.48] unit increase	Illumina [31808917] (imputed)	N
670	chr19	11222299	11222300	rs11669576	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	LDLR	rs11669576-?	NR	1E-12		4.329	[3.14-5.52] unit increase	Illumina [31808917] (imputed)	N
670	chr19	11224264	11224265	rs5930	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19p13.2	NR	rs5930-?	NR	6E-12	(conditional on round 3)	0.027328216	[0.02-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
670	chr19	11224295	11224296	rs139624145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	19p13.2		rs139624145-?	NR	3E-13		0.963399	[0.72-1.21] unit increase	NR [9800000] (imputed)	N
670	chr19	11224295	11224296	rs139624145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	19p13.2		rs139624145-?	NR	7E-19		1.15563	[0.91-1.4] unit increase	NR [9800000] (imputed)	N
670	chr19	11224295	11224296	rs139624145	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	19p13.2		rs139624145-?	NR	5E-12		0.916	[0.67-1.17] unit increase	NR [9800000] (imputed)	N
670	chr19	11225344	11225345	rs17248840	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	LDLR	rs17248840-?	NR	5E-8	(AA)	4.69805	[3-6.39] unit increase	Illumina [32003504] (imputed)	N
670	chr19	11225344	11225345	rs17248840	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	LDLR	rs17248840-?	NR	1E-12		4.702	[3.4-6] unit increase	Illumina [32003504] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-12		0.0298033	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415106	2E-9		0.0242606	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	6E-13		0.029078	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415143	6E-12		0.028752	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-8		0.0233829	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-14		0.0317686	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-9		0.0250351	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	8E-11		0.0272696	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	4E-11		0.0257215	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-23		0.041281	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415106	7E-18		0.0362158	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	4E-11		0.0266992	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	4E-14		0.030404	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	7E-13		0.0295683	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	6E-13		0.0300727	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	5E-17		0.0349211	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-12		0.0297474	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-12		0.0294907	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-11		0.0264909	[0.019-0.034] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-8		0.0232795	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	8E-13		0.0299212	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-11		0.028252	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-11		0.0268293	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415143	7E-10		0.0256395	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-15		0.0330529	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-14		0.0322424	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-14		0.0319026	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	7E-12		0.0286653	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	5E-10		0.0258746	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	9E-9		0.0237091	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-13		0.0310719	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	6E-12		0.0287726	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-18		0.0363458	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-10		0.026484	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	5E-16		0.0339126	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-14		0.031938	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	8E-13		0.0298402	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	6E-16		0.033417	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415143	7E-9		0.0232305	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-9		0.0247221	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-14		0.0318345	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-12		0.0293331	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-17		0.035008	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-9		0.0254124	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	9E-11		0.0251484	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-9		0.025104	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-14		0.0319598	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	3E-14		0.0309507	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415143	1E-10		0.0264881	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	8E-15		0.0325418	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-13		0.0308441	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	1E-16		0.034604	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	2E-10		0.0267629	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227069	11227070	rs2738445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19p13.2		rs2738445-C	0.415151	6E-16		0.0338535	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227325	11227326	rs2738446	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19p13.2	LDLR	rs2738446-C	0.14	2E-12	(LDL)	2.9507	[2.13-3.77] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
670	chr19	11227465	11227466	rs7259278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs7259278-T	NR	2E-10		0.0221	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11227465	11227466	rs7259278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs7259278-T	NR	3E-12		0.0243	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11227479	11227480	rs2738447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs2738447-A	0.40682	6E-9		0.0230877	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
670	chr19	11227479	11227480	rs2738447	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.2		rs2738447-A	0.406777	4E-8		0.0224821	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
670	chr19	11227479	11227480	rs2738447	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.2	LDLR	rs2738447-A	0.407391	4E-89		0.0422733	[0.038-0.046] unit decrease	Affymetrix [NR] (imputed)	N
670	chr19	11227479	11227480	rs2738447	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.2	LDLR	rs2738447-A	0.407297	2E-96		0.0436053	[0.04-0.048] unit decrease	Affymetrix [NR] (imputed)	N
670	chr19	11227479	11227480	rs2738447	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.2	LDLR	rs2738447-A	0.406512	5E-28		0.06257133	[0.051-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
670	chr19	11227479	11227480	rs2738447	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.2	LDLR, MIR6886	rs2738447-A	0.406	2E-8		0.036	[0.022-0.05] unit decrease	Affymetrix [7947838] (imputed)	N
670	chr19	11227553	11227554	rs1799898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs1799898-T	NR	4E-13		0.0258	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11227553	11227554	rs1799898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs1799898-T	NR	9E-16		0.0287	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11227601	11227602	rs688	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	19p13.2	LDLR	rs688-T	0.136	7E-8	(LDL)	3.402	NR unit increase	Affymetrix [305158]	N
670	chr19	11227601	11227602	rs688	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs688-?	NR	2E-8		2.235765	[1.46-3.02] unit increase	Illumina [32003504] (imputed)	N
670	chr19	11227601	11227602	rs688	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs688-?	NR	1E-8		2.007519	[1.31-2.7] unit increase	Illumina [31808917] (imputed)	N
670	chr19	11227601	11227602	rs688	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19p13.2		rs688-T	0.4002	5E-27		1.747	[1.43-2.06] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
670	chr19	11227601	11227602	rs688	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs688-C	NR	4E-28		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11227601	11227602	rs688	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs688-C	0.578	1E-25	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11227601	11227602	rs688	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs688-C	NR	2E-32		0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11227601	11227602	rs688	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs688-C	0.578	5E-30	(EA)	0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11227644	11227645	rs72658865	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	19p13.2		rs72658865-?	NR	4E-10		0.325775	[0.23-0.43] unit increase	NR [9800000] (imputed)	N
670	chr19	11227644	11227645	rs72658865	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	19p13.2		rs72658865-?	NR	1E-10		0.33522	[0.23-0.44] unit increase	NR [9800000] (imputed)	N
670	chr19	11227644	11227645	rs72658865	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	19p13.2		rs72658865-?	NR	9E-11		0.330127	[0.23-0.43] unit increase	NR [9800000] (imputed)	N
670	chr19	11229217	11229218	rs2738452	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	19p13.2	LDLR	rs2738452-A	0.83	5E-9	(BMI unadjusted)	0.081	[0.054-0.108] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
670	chr19	11231202	11231203	rs72658867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs72658867-A	NR	9E-195		0.3245	[0.3-0.35] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11231202	11231203	rs72658867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs72658867-A	NR	7E-239		0.3599	[0.34-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11231202	11231203	rs72658867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs72658867-A	NR	5E-216		0.3428	[0.32-0.36] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11231334	11231335	rs41301949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs41301949-G	NR	3E-9		0.0375	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
670	chr19	11233940	11233941	rs5927	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	19p13.2	LDLR	rs5927-A	0.24	9E-6		0.08	[0.041-0.119] unit decrease	Illumina, Perlegen [2156702] (imputed)	N
670	chr19	11238472	11238473	rs2738459	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.2	LDLR	rs2738459-C	0.48	7E-6		0.02	[0.01-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
670	chr19	11240052	11240053	rs2569537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs2569537-A	NR	2E-22		0.027	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11240052	11240053	rs2569537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs2569537-A	NR	3E-30		0.0318	[0.026-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11240052	11240053	rs2569537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs2569537-A	NR	4E-29		0.0312	[0.026-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11240229	11240230	rs879255211	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19p13.2	LDLR	rs879255211-?	NR	5E-6		1.60406	[0.91-2.3] unit increase	Illumina [19707525] (imputed)	N
670	chr19	11242306	11242307	rs2738464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19p13.2		rs2738464-C	NR	6E-9		0.0933	[0.062-0.125] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
670	chr19	11242306	11242307	rs2738464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	19p13.2		rs2738464-C	0.687669	3E-53		0.0590346	[0.052-0.067] unit increase	Illumina [13476599] (imputed)	N
670	chr19	11242306	11242307	rs2738464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19p13.2		rs2738464-C	NR	6E-14		0.0834	[0.062-0.105] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
670	chr19	11242306	11242307	rs2738464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19p13.2		rs2738464-C	0.686590219	7E-59		0.16188581	[0.14-0.18] unit increase	Illumina [13429980] (imputed)	N
670	chr19	11242306	11242307	rs2738464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	19p13.2		rs2738464-C	0.68346282	2E-8		0.08019603	[0.052-0.108] unit increase	Illumina [13426705] (imputed)	N
670	chr19	11242306	11242307	rs2738464	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	19p13.2	LDLR	rs2738464-C	0.68	1E-9		1.13	[1.08-1.17]	Illumina [5932413] (imputed)	N
670	chr19	11242306	11242307	rs2738464	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs2738464-?	NR	2E-15		1.826	[1.36-2.29] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11242306	11242307	rs2738464	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs2738464-?	NR	2E-20		2.006	[1.55-2.46] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
670	chr19	11242306	11242307	rs2738464	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19p13.2	LDLR	rs2738464-?	NR	8E-49		0.06158	[0.053-0.07] unit increase novel	Illumina [6108953] (imputed)	N
670	chr19	11242306	11242307	rs2738464	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	19p13.2	LDLR	rs2738464-?	NR	4E-40		0.07458	[0.064-0.086] unit increase novel	Illumina [6108953] (imputed)	N
670	chr19	11242306	11242307	rs2738464	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	19p13.2	LDLR	rs2738464-C	0.73	3E-15	(Asian initial, BMI unadjusted)	0.095	[0.071-0.119] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
670	chr19	11243208	11243208	rs34113544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19p13.2		rs34113544-CA	0.663088042	2E-15		0.112197354	[0.084-0.14] unit increase	Illumina [13427135] (imputed)	N
670	chr19	11250138	11250139	rs7258950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7258950-A	NR	1E-10		0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11250138	11250139	rs7258950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7258950-A	0.119	5E-7	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11250138	11250139	rs7258950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7258950-A	NR	3E-12		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11250138	11250139	rs7258950	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs7258950-A	0.119	3E-8	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
670	chr19	11250138	11250139	rs7258950	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	19p13.2	LDLR	rs7258950-G	0.78	1E-24		3.387	[2.75-4.03] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
670	chr19	11250138	11250139	rs7258950	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	19p13.2	LDLR	rs7258950-G	0.78	2E-16		3.168	[2.42-3.92] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
670	chr19	11253886	11253887	rs34774090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	19p13.2		rs34774090-C	0.686921	3E-50		0.0774796	[0.067-0.088] unit increase	Illumina [13461863] (imputed)	N
670	chr19	11253886	11253887	rs34774090	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19p13.2	LDLR, SPC24	rs34774090-?	NR	1E-13		0.0796088	[0.059-0.101] unit increase	Illumina [19707525] (imputed)	N
670	chr19	11253886	11253887	rs34774090	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19p13.2	SPC24	rs34774090-CA	0.287	3E-9		0.0338	[0.023-0.045] unit decrease	Affymetrix [at least 805769] (imputed)	N
670	chr19	11256175	11256176	rs4804146	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	19p13.2	SPC24	rs4804146-C	0.26	7E-6	(LDL)	0.053	mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
670	chr19	11256886	11256887	rs10402592	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	19p13.2	SPC24	rs10402592-?	NR	8E-7				Illumina [501584]	N
670	chr19	11257017	11257018	rs11557092	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	19p13.2	SPC24	rs11557092-T	0.25	6E-6		0.08	[0.041-0.119] unit decrease	Illumina, Perlegen [2156702] (imputed)	N
670	chr19	11257779	11257780	rs10422949	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	LDLR	rs10422949-?	NR	4E-6	(CE 18:0)	0.49575403	[0.28-0.71] unit decrease	Affymetrix [at least 2500000] (imputed)	N
670	chr19	11258584	11258593	rs746442994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs746442994-AAAAAAAAAAAAAAG,rs746442994-AAAAAAAAAAAAAAG	0.63284	2E-9		0.0258418	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11258584	11258593	rs746442994	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs746442994-AAAAAAAAAAAAAAG,rs746442994-AAAAAAAAAAAAAAG	0.63284	2E-9		0.0258418	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11262476	11262477	rs2421206	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	19p13.2	SPC24	rs2421206-?	0.34730000000000005	2E-14		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
670	chr19	11262476	11262477	rs2421206	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.2	SPC24	rs2421206-T	0.6567	4E-18		0.0177	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
670	chr19	11265019	11265020	rs11671872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs11671872-G	0.587519	1E-9		0.0231862	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
670	chr19	11265019	11265020	rs11671872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs11671872-G	0.587519	5E-12		0.0263366	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
670	chr19	11265019	11265020	rs11671872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs11671872-G	0.587519	3E-8		0.0211225	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
670	chr19	11265019	11265020	rs11671872	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs11671872-G	0.587519	6E-11		0.0252719	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
670	chr19	11265247	11265248	rs10402457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs10402457-C	NR	2E-35		0.0363	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11265247	11265248	rs10402457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs10402457-C	NR	8E-45		0.0411	[0.035-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11265247	11265248	rs10402457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs10402457-C	NR	3E-42		0.04	[0.034-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
670	chr19	11266692	11266693	rs7251031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	SPC24	rs7251031-G	0.307099	3E-12		0.016985206	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr19	11266692	11266693	rs7251031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	SPC24	rs7251031-G	0.307091	1E-13		0.018095873	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr19	11266692	11266693	rs7251031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	SPC24	rs7251031-G	0.307109	7E-15		0.018852297	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr19	11266692	11266693	rs7251031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	SPC24	rs7251031-G	0.307094	4E-16		0.019711746	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr19	11266692	11266693	rs7251031	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	19p13.2	SPC24	rs7251031-T	0.6962	7E-9		0.091	[0.061-0.121] unit increase	Affymetrix [~ 11900000] (imputed)	N
670	chr19	11269892	11269893	rs76213248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs76213248-C	0.590274	3E-11		0.0255395	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
670	chr19	11269892	11269893	rs76213248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs76213248-C	0.590274	2E-15		0.0309743	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr19	11269892	11269893	rs76213248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs76213248-C	0.590274	5E-16		0.0314948	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
670	chr19	11269892	11269893	rs76213248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	SPC24	rs76213248-C	0.58953	7E-12		0.0133361	[0.0095-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
670	chr19	11269892	11269893	rs76213248	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.2	SPC24	rs76213248-C	0.589627	2E-26		0.0213327	[0.017-0.025] unit decrease	Affymetrix [NR] (imputed)	N
670	chr19	11271549	11271550	rs7260306	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	19p13.2	KANK2	rs7260306-?	NR	4E-7		5.079	NR unit decrease	Illumina [up to 1520000] (imputed)	N
671	chr19	11273551	11273552	rs12462554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.2	NR	rs12462554-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
671	chr19	11275138	11275139	rs7188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs7188-C	NR	4E-100		0.054	[0.049-0.059] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11275138	11275139	rs7188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs7188-C	NR	1E-136		0.0633	[0.058-0.068] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11275138	11275139	rs7188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs7188-C	NR	3E-128		0.0614	[0.057-0.066] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11275138	11275139	rs7188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs7188-C	NR	2E-13		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11275841	11275842	rs3185010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs3185010-?	NR	3E-29				NR [~ 8900000] (imputed)	N
671	chr19	11276255	11276256	rs11668313	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	19p13.2	KANK2	rs11668313-?	NR	9E-8		5.341	NR unit increase	Illumina [up to 1520000] (imputed)	N
671	chr19	11277231	11277232	rs4804573	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.2	LDLR	rs4804573-?	NR	6E-28		2.186	[1.79-2.58] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
671	chr19	11277231	11277232	rs4804573	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19p13.2	LDLR	rs4804573-?	NR	1E-33		2.302	[1.92-2.69] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
671	chr19	11284027	11284028	rs4804149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs4804149-C	NR	9E-20		0.024	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11284027	11284028	rs4804149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs4804149-C	NR	2E-28		0.0293	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11284027	11284028	rs4804149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs4804149-C	NR	2E-29		0.0298	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11285389	11285390	rs440677	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	19p13.2	KANK2	rs440677-G	0.38	4E-6				Affymetrix, Illumina [8002429] (imputed)	N
671	chr19	11291781	11291782	rs573377651	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	KANK2	rs573377651-A	0.916212	3E-10		0.0228106	[0.016-0.03] unit decrease	Affymetrix [NR] (imputed)	N
671	chr19	11291912	11291918	rs371617997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.2	KANK2	rs371617997-T	0.084775	5E-166		0.110534884	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11291912	11291918	rs371617997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.2	KANK2	rs371617997-T	0.0847790000000001	1E-161		0.109102614	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11291912	11291918	rs371617997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	KANK2	rs371617997-T	0.084808	6E-34		0.048531793	[0.041-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr19	11292082	11292083	rs74180173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.2	KANK2	rs74180173-T	0.084	3E-57		0.1033283	[0.091-0.116] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11292082	11292083	rs74180173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.2	KANK2	rs74180173-T	0.084	2E-56		0.1027236	[0.09-0.115] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11292082	11292083	rs74180173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.2	KANK2	rs74180173-T	0.0839	4E-159		0.1739449	[0.16-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11292082	11292083	rs74180173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.2	KANK2	rs74180173-T	0.084	3E-160		0.1745118	[0.16-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11292810	11292811	rs12978807	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.2	KANK2	rs12978807-C	NR	6E-10		0.0451593	[0.031-0.06] unit decrease	Affymetrix [16832071] (imputed)	N
671	chr19	11292819	11292820	rs12972345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.2	KANK2	rs12972345-G	0.0803	1E-9		0.04030939	[0.027-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11294119	11294120	rs17678527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.2		rs17678527-?	NR	9E-34				NR [~ 8900000] (imputed)	N
671	chr19	11294157	11294161	rs34028053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	KANK2	rs34028053-G	0.088564	1E-12		0.028234672	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr19	11294536	11294537	rs7254114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	KANK2	rs7254114-C	0.364511	1E-20		0.023849383	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11294536	11294537	rs7254114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	KANK2	rs7254114-C	0.364523	5E-12		0.017512847	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11294536	11294537	rs7254114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	KANK2	rs7254114-C	0.36453	3E-12		0.017665854	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11294536	11294537	rs7254114	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.2	KANK2	rs7254114-C	0.364	4E-87		0.0736848	[0.066-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11296829	11296830	rs74179972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs74179972-?	NR	4E-10				NR [~ 8900000] (imputed)	N
671	chr19	11297026	11297027	rs34797640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.2	KANK2	rs34797640-A	0.084144	2E-263		0.15139785	[0.14-0.16] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11297026	11297027	rs34797640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.2	KANK2	rs34797640-A	0.0841460000000001	8E-264		0.15159166	[0.14-0.16] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11297257	11297258	rs12974711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.2	KANK2	rs12974711-C	0.084	1E-236		0.2093892	[0.2-0.22] unit increase	Affymetrix [~ 2500000] (imputed)	N
671	chr19	11297357	11297358	rs12980879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	KANK2	rs12980879-A	0.084141	2E-141		0.2513927	[0.23-0.27] unit increase	Affymetrix [93095623] (imputed)	N
671	chr19	11298368	11298369	rs111279811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs111279811-C	0.972837	6E-9		0.0752569	[0.05-0.101] unit increase	NR [11722792] (imputed)	N
671	chr19	11298368	11298369	rs111279811	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19p13.2		rs111279811-C	0.972837	3E-8		0.0705943	[0.046-0.096] unit increase	NR [11722792] (imputed)	N
671	chr19	11300364	11300365	rs138534124	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs138534124-?	NR	3E-6		4.413781	[2.57-6.26] unit decrease	Illumina [32003504] (imputed)	N
671	chr19	11300364	11300365	rs138534124	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19p13.2	NR	rs138534124-?	NR	5E-6		1.330404	[0.76-1.9] unit decrease	Illumina [31978362] (imputed)	N
671	chr19	11300364	11300365	rs138534124	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	19p13.2	KANK2, DOCK6	rs138534124-T	0.925	8E-9	(Hispanic)	0.148	[0.097-0.199] unit increase	Affymetrix [at least 370268] (imputed)	N
671	chr19	11300583	11300584	rs12979620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.2	KANK2	rs12979620-G	0.0986590000000001	3E-15		0.07091649	[0.053-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr19	11302806	11302807	rs7249565	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.2	KANK2	rs7249565-G	0.585061	3E-12		0.0145421	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
671	chr19	11303553	11303554	rs17616661	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19p13.2	DOCK6, KANK2	rs17616661-A	0.9144	2E-8		0.0567	[0.037-0.076] unit decrease	NR [8041861] (imputed)	N
671	chr19	11305885	11305886	rs12976810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.2		rs12976810-?	NR	1E-17				NR [~ 8900000] (imputed)	N
671	chr19	11312670	11312671	rs115035890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs115035890-T	NR	4E-9		0.1578	[0.11-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11312670	11312671	rs115035890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs115035890-T	NR	1E-10		0.1729	[0.12-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11317743	11317744	rs56048141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs56048141-?	NR	1E-8				NR [~ 8900000] (imputed)	N
671	chr19	11324964	11324965	rs34243815	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs34243815-T	NR	2E-9		0.028	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11324964	11324965	rs34243815	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs34243815-T	NR	3E-10		0.0293	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	6E-24		0.109491	[0.088-0.131] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	5E-24		0.109774	[0.088-0.131] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	3E-21		0.107705	[0.085-0.13] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	3E-14		0.085427	[0.063-0.107] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	2E-29		0.115341	[0.095-0.135] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	9E-10		0.0673446	[0.046-0.089] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	1E-26		0.115008	[0.094-0.136] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966297	3E-28		0.1182	[0.097-0.139] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	2E-9		0.0665041	[0.045-0.088] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966297	2E-9		0.0639598	[0.043-0.085] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	5E-9		0.0649344	[0.043-0.087] unit decrease	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	7E-14		0.0853186	[0.063-0.108] unit decrease	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966297	6E-31		0.124869	[0.1-0.15] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966297	2E-32		0.126857	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	6E-20		0.0932982	[0.073-0.113] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	1E-12		0.071704	[0.052-0.092] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	6E-19		0.0995971	[0.078-0.122] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	4E-29		0.116451	[0.096-0.137] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	3E-23		0.100437	[0.081-0.12] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	3E-13		0.0832429	[0.061-0.106] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	2E-27		0.116441	[0.095-0.137] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	4E-15		0.089659	[0.067-0.112] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	1E-9		0.0693261	[0.047-0.092] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	1E-23		0.105705	[0.085-0.126] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	2E-18		0.0900804	[0.07-0.11] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	2E-12		0.0800235	[0.058-0.102] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	6E-25		0.108373	[0.088-0.129] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.2		rs17699030-A	0.966289	3E-31		0.12159	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
671	chr19	11330941	11330942	rs17699030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	DOCK6	rs17699030-G	0.03374	2E-13		0.045466837	[0.033-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr19	11330941	11330942	rs17699030	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.2	NR	rs17699030-?	NR	8E-6		1.7062	[NR]	Affymetrix [722112]	N
671	chr19	11334294	11334295	rs4804155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19p13.2	NR	rs4804155-G	NR	4E-9		0.023	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11334294	11334295	rs4804155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs4804155-G	NR	7E-41		0.0546	[0.047-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11334294	11334295	rs4804155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs4804155-G	NR	1E-44		0.0573	[0.049-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11334294	11334295	rs4804155	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs4804155-?	NR	4E-15		3.191718	[2.4-3.99] unit decrease	Illumina [32003504] (imputed)	N
671	chr19	11334294	11334295	rs4804155	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs4804155-?	NR	2E-9		2.212809	[1.49-2.93] unit decrease	Illumina [31808917] (imputed)	N
671	chr19	11334294	11334295	rs4804155	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19p13.2	NR	rs4804155-?	NR	4E-24		1.333811	[1.08-1.59] unit decrease	Illumina [31978362] (imputed)	N
671	chr19	11334294	11334295	rs4804155	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	19p13.2	LDLR	rs4804155-C	0.74	5E-15	(Asian initial, BMI unadjusted)	0.076	[0.058-0.094] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
671	chr19	11334294	11334295	rs4804155	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	19p13.2	LDLR	rs4804155-C	0.75	7E-11	(BMI unadjusted)	0.074	[0.052-0.096] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
671	chr19	11334294	11334295	rs4804155	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	19p13.2	DOCK6	rs4804155-C	0.69	5E-6		0.0751	[0.043-0.107] unit increase	Affymetrix [~ 2740000] (imputed)	N
671	chr19	11335476	11335477	rs8101801	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs8101801-T	NR	6E-10		0.0683	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
671	chr19	11335476	11335477	rs8101801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.2	DOCK6	rs8101801-C	0.964442	6E-16		0.0452454	[0.034-0.056] unit increase	Affymetrix [NR] (imputed)	N
671	chr19	11335596	11335597	rs6511728	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs6511728-A	0.848804	1E-8		0.0304264	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
671	chr19	11336443	11336444	rs66466742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19p13.2		rs66466742-C	0.964968	4E-10		0.0686993	[0.047-0.09] unit increase	NR [11722792] (imputed)	N
671	chr19	11336443	11336444	rs66466742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs66466742-C	0.964968	7E-12		0.0752431	[0.054-0.097] unit decrease	NR [11722792] (imputed)	N
671	chr19	11336443	11336444	rs66466742	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	19p13.2	DOCK6	rs66466742-?	NR	2E-36		0.02305	[0.019-0.027] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
671	chr19	11341028	11341029	rs1865063	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs1865063-C	NR	1E-13		0.1695	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
671	chr19	11341028	11341029	rs1865063	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	19p13.2	ANGPTL8	rs1865063-T	0.26	6E-12	(BMI adjusted)	0.0632	[0.046-0.08] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
671	chr19	11341634	11341635	rs10406522	29511194	Helgadottir A	2018-03-07	Nat Commun	Genome-wide analysis yields new loci associating with aortic valve stenosis.	Aortic valve stenosis	2,457 Icelandic ancestry cases, 349,342 Icelandic ancestry controls (including non-array genotyped, whole genome imputed individuals)	4,850 European ancestry cases, 451,731 European ancestry controls	19p13.2	NR	rs10406522-C	0.213	4E-7		1.11	[1.07-1.16]	Illumina [32500000] (imputed)	N
671	chr19	11342598	11342599	rs17766692	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	DOCK6	rs17766692-C	0.812868	1E-12	(1-stearoyl-2-linoleoyl-GPI (18:0/18:2))	0.213	[0.15-0.27] unit increase	Illumina [13039987] (imputed)	N
671	chr19	11342598	11342599	rs17766692	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19p13.2	NR	rs17766692-?	NR	8E-9		0.071	[0.047-0.095] unit decrease	Illumina [1770809] (imputed)	N
671	chr19	11342702	11342703	rs12979813	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs12979813-?	NR	2E-10		2.373585	[1.64-3.1] unit decrease	Illumina [32003504] (imputed)	N
671	chr19	11342702	11342703	rs12979813	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs12979813-?	NR	1E-6		1.623306	[0.96-2.28] unit decrease	Illumina [31808917] (imputed)	N
671	chr19	11342702	11342703	rs12979813	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19p13.2	NR	rs12979813-?	NR	6E-13		0.8694282	[0.63-1.11] unit decrease	Illumina [31978362] (imputed)	N
671	chr19	11342702	11342703	rs12979813	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	19p13.2	LOC55908	rs12979813-T	0.495	2E-9	(AA)	0.0235	[NR] unit decrease	Affymetrix [NR]	N
671	chr19	11342785	11342785	rs202054440	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19p13.2	DOCK6	rs202054440-?	NR	2E-11		0.0446	[0.033-0.056] unit increase	Affymetrix [5701386] (imputed)	N
671	chr19	11343794	11343795	rs17699089	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19p13.2	DOCK6	rs17699089-G	0.272	7E-9		3.8794	[2.57-5.19] unit decrease	Affymetrix [at least 805769] (imputed)	N
671	chr19	11344554	11344555	rs553577764	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19p13.2	DOCK6	rs553577764-?	NR	1E-11		1.12494	[0.8-1.45] unit increase	Illumina [19707525] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964842	4E-18		0.0953447	[0.074-0.117] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964842	8E-15		0.0852475	[0.064-0.107] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	6E-17		0.0925886	[0.071-0.114] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	5E-15		0.0865727	[0.065-0.108] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	9E-22		0.104409	[0.083-0.126] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964842	5E-10		0.0693064	[0.047-0.091] unit decrease	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	1E-20		0.101934	[0.08-0.123] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	8E-10		0.0680189	[0.046-0.09] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964845	2E-16		0.0908691	[0.069-0.112] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964842	1E-8		0.0632968	[0.041-0.085] unit increase	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs56322906-G	0.964842	2E-12		0.0775653	[0.056-0.099] unit decrease	NR [11722792] (imputed)	N
671	chr19	11346154	11346155	rs56322906	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19p13.2		rs56322906-T	NR	4E-11		0.0827	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
671	chr19	11346549	11346550	rs3760782	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	DOCK6	rs3760782-?		8E-9		0.0312	[0.021-0.042] unit increase	Illumina [31500000] (imputed)	N
671	chr19	11346549	11346550	rs3760782	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19p13.2	ANGPTL8	rs3760782-T	0.25	9E-11	(Asian initial, BMI unadjusted)	0.07	[0.048-0.092] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
671	chr19	11347492	11347493	rs737337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs737337-T	0.923211	7E-13		0.0487456	[0.035-0.062] unit increase	NR [11722792] (imputed)	N
671	chr19	11347492	11347493	rs737337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs737337-T	0.923211	4E-11		0.0453575	[0.032-0.059] unit increase	NR [11722792] (imputed)	N
671	chr19	11347492	11347493	rs737337	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs737337-T	0.923211	1E-11		0.0463598	[0.033-0.06] unit increase	NR [11722792] (imputed)	N
671	chr19	11347492	11347493	rs737337	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs737337-?	NR	1E-15		3.143046	[2.37-3.91] unit decrease	Illumina [32003504] (imputed)	N
671	chr19	11347492	11347493	rs737337	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs737337-?	NR	6E-10		2.198551	[1.5-2.9] unit decrease	Illumina [31808917] (imputed)	N
671	chr19	11347492	11347493	rs737337	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19p13.2	NR	rs737337-?	NR	1E-20		1.1836	[0.93-1.43] unit decrease	Illumina [31978362] (imputed)	N
671	chr19	11347492	11347493	rs737337	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19p13.2		rs737337-T	0.7615	2E-21		0.0153	[0.012-0.018] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	NR	2E-9		0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	NR	7E-6		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	NR	7E-22		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	0.914	5E-11	(EA)	0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	0.804	7E-7	(Hispanic)	0.077	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.2	NR	rs737337-T	0.769	3E-7	(East Asian)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
671	chr19	11347492	11347493	rs737337	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19p13.2	ANGPTL8	rs737337-T	0.931	1E-21	(Trans-ethnic initial)	0.0565	[0.045-0.068] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
671	chr19	11347492	11347493	rs737337	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total cholesterol levels	12,685 Chinese ancestry individuals	NA	19p13.2	DOCK6	rs737337-C	0.273	8E-10		0.09	[0.07-0.11] unit decrease	Illumina [286795]	N
671	chr19	11347492	11347493	rs737337	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	19p13.2	ANGPTL8	rs737337-C	0.274	3E-7		0.073	[0.046-0.1] unit decrease	Illumina [286795]	N
671	chr19	11347492	11347493	rs737337	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.2	ANGPTL8	rs737337-C	0.11	5E-17		0.056	[NR] unit decrease	NR [NR] (imputed)	N
671	chr19	11347492	11347493	rs737337	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19p13.2	DOCK6, LOC55908	rs737337-C	0.08	3E-9		0.64	[0.37-0.91] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs737338-C	0.964813	6E-33		0.124287	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs737338-C	0.964813	2E-27		0.120657	[0.099-0.142] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.2		rs737338-C	0.964813	1E-35		0.130424	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19p13.2		rs737338-C	0.964813	5E-33		0.121115	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19p13.2		rs737338-C	0.964816	3E-10		0.0674466	[0.046-0.089] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs737338-C	0.964813	8E-32		0.12112	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
671	chr19	11347656	11347657	rs737338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19p13.2		rs737338-T	NR	5E-40		0.0549	[0.047-0.063] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
671	chr19	11347656	11347657	rs737338	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	DOCK6	rs737338-C	0.82369	6E-11	(1-oleoyl-GPI (18:1)*)	0.199	[0.14-0.26] unit increase	Illumina [13039987] (imputed)	N
671	chr19	11347656	11347657	rs737338	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.2	DOCK6	rs737338-C	0.96492	1E-66		0.0893392	[0.079-0.099] unit increase	Affymetrix [NR] (imputed)	N
671	chr19	11347656	11347657	rs737338	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.2	DOCK6	rs737338-C	0.964893	2E-91		0.108223	[0.098-0.119] unit increase	Affymetrix [NR] (imputed)	N
671	chr19	11347656	11347657	rs737338	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19p13.2	DOCK6	rs737338-?	NR	5E-34		0.02183	[0.018-0.026] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
671	chr19	11348520	11348521	rs3745683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	DOCK6	rs3745683-A	0.074921	3E-13		0.030761238	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr19	11350325	11350326	rs59168178	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	C19orf80	rs59168178-A	0.0818	3E-14		0.0767	[0.057-0.096] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964816	4E-15		0.0773553	[0.058-0.097] unit increase	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964816	3E-27		0.116744	[0.096-0.138] unit increase	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964816	2E-17		0.0834652	[0.064-0.103] unit increase	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964821	5E-14		0.0747168	[0.055-0.094] unit decrease	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964816	1E-14		0.0755985	[0.056-0.095] unit increase	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964821	1E-12		0.0755572	[0.055-0.096] unit decrease	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19p13.2		rs2278426-C	0.964816	2E-12		0.0695785	[0.05-0.089] unit increase	NR [11722792] (imputed)	N
671	chr19	11350487	11350488	rs2278426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19p13.2		rs2278426-T	NR	1E-20		0.0344	[0.027-0.042] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
671	chr19	11350487	11350488	rs2278426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	19p13.2		rs2278426-T	0.264901	1E-12		0.0323162	[0.023-0.041] unit decrease	Illumina [13471903] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33619548	Oldoni F	2021-02-23	J Clin Endocrinol Metab	Genetic and Metabolic Determinants of Plasma Levels of ANGPTL8.	Plasma ANGPTL8 levels	1,779 African American individuals, 1,022 European ancestry individuals, 589 Hispanic or Latin American individuals, 67 individuals	NA	19p13.2		rs2278426-T	NR	6E-140		0.81	unit increase	NR [346167]	N
671	chr19	11350487	11350488	rs2278426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs2278426-T	NR	1E-13		0.0456	[0.034-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs2278426-T	NR	1E-58		0.0988	[0.087-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs2278426-T	NR	7E-23		0.0603	[0.048-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs2278426-T	NR	4E-61		0.1057	[0.093-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19p13.2	NR	rs2278426-T	NR	1E-85		0.1259	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.2	ANGPTL8	rs2278426-?		3E-15		0.0377	[0.028-0.047] unit increase	Illumina [31500000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	C19orf80	rs2278426-T	0.176636	4E-14	(1-stearoyl-2-arachidonoyl-GPI (18:0/20:4))	0.233	[0.17-0.29] unit decrease	Illumina [13039987] (imputed)	N
671	chr19	11350487	11350488	rs2278426	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.2	C19orf80	rs2278426-C	0.822181	6E-15	(1-stearoyl-2-oleoyl-GPI (18:0/18:1)*)	0.239	[0.18-0.3] unit increase	Illumina [13039987] (imputed)	N
671	chr19	11350487	11350488	rs2278426	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs2278426-?	NR	5E-21		0.097	[0.077-0.117] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
671	chr19	11350487	11350488	rs2278426	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.2		rs2278426-?	NR	6E-11		0.068	[0.048-0.088] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
671	chr19	11350487	11350488	rs2278426	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.2	DOCK6	rs2278426-C	0.964955	2E-14		0.0413518	[0.031-0.052] unit increase	Affymetrix [NR] (imputed)	N
671	chr19	11350487	11350488	rs2278426	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.2	NR	rs2278426-?	NR	5E-21		4.267062	[3.38-5.16] unit decrease	Illumina [32003504] (imputed)	N
671	chr19	11350487	11350488	rs2278426	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.2	NR	rs2278426-?	NR	6E-11		2.67804	[1.88-3.48] unit decrease	Illumina [31808917] (imputed)	N
671	chr19	11350487	11350488	rs2278426	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19p13.2	NR	rs2278426-?	NR	2E-21		1.405086	[1.12-1.69] unit decrease	Illumina [31978362] (imputed)	N
671	chr19	11350487	11350488	rs2278426	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19p13.2	C19orf80, DOCK6	rs2278426-T	0.273	1E-8		3.8231	[2.51-5.13] unit decrease	Affymetrix [at least 805769] (imputed)	N
671	chr19	11350487	11350488	rs2278426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.2		rs2278426-?	NR	1E-8				NR [~ 8900000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	C19orf80	rs2278426-T	0.1249	1E-52		0.0756	[0.066-0.085] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
671	chr19	11350487	11350488	rs2278426	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	19p13.2	ANGPTL8	rs2278426-?	NR	2E-13		0.03571	[0.026-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
671	chr19	11350487	11350488	rs2278426	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19p13.2	NR	rs2278426-?	NR	8E-32		0.05178	[0.043-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
671	chr19	11350487	11350488	rs2278426	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	19p13.2	NR	rs2278426-?	NR	2E-9		0.03563	[0.024-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
671	chr19	11350487	11350488	rs2278426	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	HDL cholesterol	1,122 Mexican ancestry hypertriglyceridemia cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry hypertriglyceridemia cases, 1,054 Mexican ancestry controls	19p13.2	TSPAN16, SPC24, RAB3D, KANK2, DOCK6, LOC55908	rs2278426-?	0.3	3E-9		0.14	[0.1-0.18] unit decrease	Illumina [1361436] (imputed)	N
671	chr19	11350873	11350874	rs145464906	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	19p13.2		rs145464906-?	NR	2E-33		0.542413	[0.45-0.64] unit decrease	NR [9800000] (imputed)	N
671	chr19	11350873	11350874	rs145464906	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	19p13.2		rs145464906-?	NR	3E-22		0.437841	[0.34-0.53] unit increase	NR [9800000] (imputed)	N
671	chr19	11350873	11350874	rs145464906	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	19p13.2		rs145464906-?	NR	2E-12		0.331408	[0.23-0.43] unit increase	NR [9800000] (imputed)	N
671	chr19	11350873	11350874	rs145464906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.2	NR	rs145464906-T	NR	2E-18		0.4836	[0.38-0.59] unit decrease	Affymetrix [9000000] (imputed)	N
671	chr19	11350873	11350874	rs145464906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19p13.2	NR	rs145464906-T	NR	7E-13		0.4208	[0.31-0.54] unit increase	Affymetrix [9000000] (imputed)	N
671	chr19	11350873	11350874	rs145464906	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	HDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19p13.2	ANGPTL8	rs145464906-?	0.001	5E-11	(conditioned on rs737337, EA)	10.0	mg/dl increase	Illumina [247644]	N
671	chr19	11355751	11355752	rs10413278	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.2	DOCK6	rs10413278-G	0.497904	1E-9		0.03484486	[0.024-0.046] unit increase	Affymetrix [7288503] (imputed)	N
671	chr19	11361619	11361620	rs35464191	33619548	Oldoni F	2021-02-23	J Clin Endocrinol Metab	Genetic and Metabolic Determinants of Plasma Levels of ANGPTL8.	Plasma ANGPTL8 levels	1,779 African American individuals, 1,022 European ancestry individuals, 589 Hispanic or Latin American individuals, 67 individuals	NA	19p13.2		rs35464191-?	NR	1E-6		0.849	[0.51-1.19] unit increase	NR [346167]	N
671	chr19	11386860	11386861	rs9749453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs9749453-G	0.178084	2E-10				Affymetrix, Illumina [23114412] (imputed)	N
671	chr19	11388712	11388713	rs140402167	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	intergenic	rs140402167-T	0.0308	6E-29		0.181	[0.15-0.21] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
672	chr19	11414705	11414706	rs56121005	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.2	TSPAN16	rs56121005-T	0.0129	4E-10		0.1052	[0.072-0.138] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
672	chr19	11423702	11423703	rs322144	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	19p13.2	TSPAN16	rs322144-C	0.53	7E-9		1.0526316	[1.03-1.08] (BCAC)	Illumina [~ 11500000] (imputed)	N
672	chr19	11433930	11433931	rs148273964	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	19p13.2	Intergenic	rs148273964-A	NR	8E-7	(between families)	4.936	unit decrease	Affymetrix [up to 15107142] (imputed)	N
672	chr19	11436338	11436339	rs28453057	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	19p13.2	RAB3D	rs28453057-A	0.04	3E-6		1.4	[1.26-1.54]	Affymetrix, Illumina [up to 6976246] (imputed)	N
672	chr19	11441373	11441374	rs55670943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19p13.2		rs55670943-C	NR	4E-8		0.0789	[0.051-0.107] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
672	chr19	11446030	11446031	rs112354933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.2	NR	rs112354933-C	NR	2E-11		0.0433	[0.031-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
672	chr19	11446030	11446031	rs112354933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.2	NR	rs112354933-C	NR	1E-13		0.048	[0.035-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
672	chr19	11446030	11446031	rs112354933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.2	NR	rs112354933-C	NR	2E-13		0.0474	[0.035-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
672	chr19	11472462	11472462	rs139735451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.2	DKFZP761J1410	rs139735451-GAT	0.011244	3E-11		0.07164444	[0.051-0.093] unit increase	Affymetrix [93095623] (imputed)	N
672	chr19	11477539	11477540	rs146207376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.2	NR	rs146207376-T	0.011471	2E-15		0.072427	[0.055-0.09] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
672	chr19	11490063	11490064	rs184452209	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19p13.2		rs184452209-G	0.00589	5E-10		0.138104	[0.095-0.182] unit decrease	Illumina [13479135] (imputed)	N
672	chr19	11493779	11493780	rs370865377	30271932	Oskarsson GR	2018-05-17	Commun Biol	A truncating mutation in EPOR leads to hypo-responsiveness to erythropoietin with normal haemoglobin.	Serum erythropoietin levels	2,994 Icelandic ancestry individuals, 1,193 non-array typed, familial imputed Icelandic ancestry individuals	68 Icelandic ancestry individuals	19p13.2	EPOR	rs370865377-A	0.09	2E-11		1.47	[0.91-2.03] unit increase	Illumina [32554515] (imputed)	N
672	chr19	11494642	11494643	rs111612809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs111612809-C	0.0116068	2E-17				Affymetrix, Illumina [24588908] (imputed)	N
672	chr19	11496791	11496792	rs4804163	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.2		rs4804163-A	NR	2E-11		0.0639	[0.045-0.083] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
672	chr19	11496980	11496981	rs318719	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.2	EPOR, RGL3, SWSAP1	rs318719-T	0.907	2E-6		0.054	[0.032-0.076] unit decrease	Affymetrix [7947838] (imputed)	N
672	chr19	11508504	11508505	rs112178079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	RGL3	rs112178079-C	0.010966	1E-9		0.0634544	[0.044-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr19	11508504	11508505	rs112178079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	RGL3	rs112178079-C	0.01097	1E-11		0.07171154	[0.051-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
672	chr19	11511412	11511413	rs317911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.2		rs317911-?	NR	2E-11				NR [~ 8900000] (imputed)	N
672	chr19	11526181	11526182	rs77279095	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	19p13.2	RGL3	rs77279095-A	0.039407582	7E-9		0.8576	[0.57-1.15] unit increase	Affymetrix [~ 9800000] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.2		rs167479-T	NR	3E-46		0.0268	[0.023-0.031] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	19p13.2		rs167479-T	0.502515	9E-18		0.0291776	[0.023-0.036] unit decrease	Illumina [13477770] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.2		rs167479-T	NR	8E-18		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	19p13.2		rs167479-T	NR	1E-11		0.0431	[0.031-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	19p13.2		rs167479-T	NR	3E-17		0.0489	[0.038-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	19p13.2		rs167479-T	NR	2E-14		0.051	[0.038-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19p13.2		rs167479-T	NR	4E-28		0.054	[0.044-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.2		rs167479-T	NR	4E-48		0.0278	[0.024-0.032] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	19p13.2		rs167479-T	0.502529	3E-17		0.0295175	[0.023-0.036] unit decrease	Illumina [13477767] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.2		rs167479-T	NR	2E-38		0.0256	[0.022-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
672	chr19	11526764	11526765	rs167479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	19p13.2		rs167479-T	0.502518	7E-13		0.0255177	[0.019-0.032] unit decrease	Illumina [13477770] (imputed)	N
672	chr19	11526764	11526765	rs167479	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	19p13.2	RGL3	rs167479-T	0.16	2E-8		0.88	[0.84-0.92]	Affymetrix [NR]	N
672	chr19	11526764	11526765	rs167479	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	19p13.2	RGL3	rs167479-?	NR	8E-16		0.04913276	NR unit increase	Affymetrix [464137]	N
672	chr19	11526764	11526765	rs167479	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	19p13.2	RGL3	rs167479-T	0.473078	8E-13		0.056449015	[0.041-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
672	chr19	11526764	11526765	rs167479	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	19p13.2	RGL3	rs167479-T	0.473277	1E-15		0.06429934	[0.049-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
672	chr19	11526764	11526765	rs167479	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	19p13.2	RGL3	rs167479-T	0.473349	5E-12		0.056873344	[0.041-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
672	chr19	11526764	11526765	rs167479	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.2	RGL3	rs167479-T	0.471256	1E-24		0.06187271	[0.05-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
672	chr19	11526764	11526765	rs167479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.2		rs167479-?	NR	1E-62				NR [~ 8900000] (imputed)	N
672	chr19	11526764	11526765	rs167479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.2		rs167479-?	NR	9E-42				NR [~ 8900000] (imputed)	N
672	chr19	11526764	11526765	rs167479	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.2	RGL3	rs167479-T	0.4565	4E-36		0.4121	[0.35-0.48] mmHg decrease	Affymetrix [NR] (imputed)	N
672	chr19	11526764	11526765	rs167479	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	RGL3	rs167479-G		2E-21		0.41	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr19	11526764	11526765	rs167479	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	RGL3	rs167479-G		3E-8		0.179	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr19	11526764	11526765	rs167479	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.2	RGL3	rs167479-G		4E-22		0.251	unit increase	Affymetrix [at least 2696785] (imputed)	N
672	chr19	11526764	11526765	rs167479	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.2	RGL3	rs167479-T	0.448	1E-23		0.45	[0.35-0.55] unit decrease	Illumina [247039]	N
672	chr19	11526764	11526765	rs167479	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	19p13.2	RGL3	rs167479-T	0.447681772575337	7E-11		0.30355528	[0.21-0.39] unit decrease	Illumina [247039]	N
672	chr19	11526764	11526765	rs167479	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Hypertension	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.2	RGL3	rs167479-T	0.451	1E-14		7.721299	z score decrease	Illumina [247039]	N
672	chr19	11526764	11526765	rs167479	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	19p13.2	RGL3	rs167479-T	0.448	4E-28		0.3	[0.24-0.36] unit decrease	Illumina [247039]	N
672	chr19	11526764	11526765	rs167479	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.2	RGL3	rs167479-T	0.4726	9E-27		0.4679	[0.38-0.55] mmHg decrease	Illumina [242296]	N
672	chr19	11526764	11526765	rs167479	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.2	RGL3	rs167479-T	0.4763	6E-7		0.1534	[0.093-0.214] mmHg decrease	Illumina [242296]	N
672	chr19	11526764	11526765	rs167479	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.2	RGL3	rs167479-T	0.4727	3E-15		7.876	z score decrease	Illumina [242296]	N
672	chr19	11526764	11526765	rs167479	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.2	RGL3	rs167479-T	0.4829	3E-32		0.313	mmHg decrease	Illumina [242296]	N
673	chr19	11560346	11560347	rs755000	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.2	PRKCSH	rs755000-?	NR	1E-12	(FreeC)	0.03835713	NR unit decrease	Illumina [609262]	N
673	chr19	11584817	11584818	rs17638167	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	19p13.2	ELAVL3	rs17638167-T	0.047	7E-6		0.4784	[0.27-0.69] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
673	chr19	11584817	11584818	rs17638167	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	19p13.2	ELAVL3	rs17638167-T	0.047	4E-8		0.3479	[0.22-0.47] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
673	chr19	11612497	11612498	rs624899	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	19p13.2	CCDC151, PRKCSH, ELAVL3, ZNF653, ECSIT, CNN1	rs624899-?	NR	4E-6	(Anti-?2GPI Domain 1 IgG and Anti-cardiolipin IgG)			Affymetrix [at least 662405]	N
673	chr19	11652719	11652720	rs10415749	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	19p13.2	CNN1, CCDC151, PRKCSH, ELAVL3, ZNF653, ECSIT	rs10415749-?	NR	5E-8	(Anti-?2GPI domain 1 IgG, 99th percentile)	2.1915	[1.4-2.98]	Affymetrix [at least 662405]	N
673	chr19	11655009	11655010	rs11880637	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	19p13.2	NR	rs11880637-T	0.011251	6E-6	(IGP65)	3.9206	[2.22-5.62] unit decrease	Illumina [~ 2500000] (imputed)	N
673	chr19	11655009	11655010	rs11880637	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	19p13.2	NR	rs11880637-T	0.011251	6E-6	(IGP62)	3.8696	[2.2-5.54] unit decrease	Illumina [~ 2500000] (imputed)	N
673	chr19	11655009	11655010	rs11880637	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	19p13.2	NR	rs11880637-T	0.011251	6E-6	(IGP61)	3.9379	[2.24-5.64] unit decrease	Illumina [~ 2500000] (imputed)	N
673	chr19	11660011	11660012	rs8100751	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP5	5,364 Icelandic ancestry individuals	NA	19p13.2		rs8100751-T	0.1854	3E-18		0.210516	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
674	chr19	11682494	11682495	rs7253363	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	19p13.2	ACP5	rs7253363-?	0.05	9E-6			[NR]	Illumina [551642]	N
674	chr19	11690846	11690847	rs111931834	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	NR	rs111931834-A	0.125	3E-40	(Tartrate-resistant acid phosphatase type 5, ACP5.3232.28.2)	0.49	[0.41-0.57] unit increase	Affymetrix [10572788] (imputed)	N
674	chr19	11698658	11698659	rs79061565	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.2	ACP5	rs79061565-G	0.123	2E-40	(Tartrate-resistant acid phosphatase type 5, ACP5.3232.28.2)	0.48	[0.4-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
674	chr19	11707457	11707458	rs10424332	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACP5	5,364 Icelandic ancestry individuals	NA	19p13.2		rs10424332-C	0.2868	9E-21		0.19045	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
674	chr19	11707457	11707458	rs10424332	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.2	ACP5	rs10424332-A	0.71265625	2E-17	(ACP5, 3232_28_2)	0.2261145	[0.17-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
674	chr19	11734625	11734626	rs187568415	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19p13.2	NR	rs187568415-?	NR	2E-8	(Japanese)	0.9328	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
674	chr19	11769366	11769367	rs527608912	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	19p13.2	NR	rs527608912-?	NR	8E-6		0.768167	[0.43-1.1] unit increase	NR [13958389] (imputed)	N
675	chr19	11832834	11832835	rs200560875	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19p13.2	ZNF823	rs200560875-A	0.347	9E-11		0.05578		Illumina [243345]	N
675	chr19	11839010	11839011	rs286268	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	ZNF441	rs286268-?	NR	3E-6	(TAG 46:0)	0.22213703	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
675	chr19	11849735	11849736	rs72986630	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	19p13.2	NR	rs72986630-?	NR	1E-9		1.15558	[1.11-1.2]	Affymetrix, Illumina [12447948] (imputed)	N
675	chr19	11849735	11849736	rs72986630	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	19p13.2	ZNF823	rs72986630-?	NR	5E-9		0.024804784	[0.017-0.033] unit decrease	NR [7306098]	N
675	chr19	11849735	11849736	rs72986630	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	19p13.2	ZNF440, ZNF441, ZNF491, ZNF823	rs72986630-T		5E-8		1.14	[1.09-1.20]	Affymetrix, Illumina [NR]	N
675	chr19	11849735	11849736	rs72986630	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19p13.2	NR	rs72986630-T	NR	2E-8		1.16	[NR]	Illumina [7158791] (imputed)	N
675	chr19	11894534	11894535	rs286219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19p13.2	NR	rs286219-G	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
675	chr19	11913155	11913156	rs55972630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.2		rs55972630-?	NR	2E-8				NR [~ 8900000] (imputed)	N
675	chr19	11918877	11918878	rs11670714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs11670714-A	0.298241	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
675	chr19	11918877	11918878	rs11670714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.2	NR	rs11670714-A	0.32388	9E-11				Affymetrix, Illumina [23114412] (imputed)	N
675	chr19	11918877	11918878	rs11670714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.2	NR	rs11670714-A	0.370512	1E-11		0.013512	[0.0096-0.0174] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
675	chr19	11921020	11921021	rs12973655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.2		rs12973655-?	NR	3E-12				NR [~ 8900000] (imputed)	N
675	chr19	11922834	11922835	rs6511761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.2	ZNF440	rs6511761-A	0.412461	8E-11		0.014639135	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
675	chr19	11923258	11923259	rs8111967	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.2	ZNF491	rs8111967-?	NR	9E-6	(DAG 36:1)	1.7764081	[0.99-2.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
676	chr19	11943224	11943225	rs200705543	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	19p13.2		rs200705543-?	NR	7E-9		0.0905358	[0.06-0.121] unit increase	NR [9800000] (imputed)	N
676	chr19	11955766	11955767	rs12462826	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19p13.2		rs12462826-?	NR	4E-10		0.0132119	[0.0091-0.0174] unit decrease	NR [6912294] (imputed)	N
676	chr19	11979163	11979164	rs10500209	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19p13.2	NR	rs10500209-C	0.282129	6E-10		0.013417	[0.0092-0.0177] unit decrease	Affymetrix [16668957] (imputed)	N
676	chr19	11979668	11979669	rs117322896	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	19p13.2	ZNF439	rs117322896-T	NR	3E-6		0.384	[0.22-0.54] unit increase	Illumina [6319684] (imputed)	N
676	chr19	12014354	12014355	rs11671654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	ZNF69	rs11671654-G	0.491857	1E-9		0.013516125	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
676	chr19	12014354	12014355	rs11671654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.2		rs11671654-?	NR	6E-12				NR [~ 8900000] (imputed)	N
676	chr19	12046095	12046096	rs113452479	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	19p13.2	NR	rs113452479-G		8E-6		0.3761	[0.21-0.54] SD units increase	NR [10700000] (imputed)	N
677	chr19	12061383	12061384	rs279261	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p13.2	NR	rs279261-?	NR	5E-6				Affymetrix [NR]	N
677	chr19	12076850	12076851	rs60722046	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.2	ZNF763	rs60722046-?	NR	2E-7		0.029423632	[0.018-0.04] unit increase	Illumina [27896057] (imputed)	N
677	chr19	12140065	12140066	rs530032615	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	19p13.2	NR	rs530032615-A		1E-7		1.363	[NR] unit increase	Illumina [NR]	N
677	chr19	12146369	12146370	rs3745672	20598377	Nischwitz S	2010-06-30	J Neuroimmunol	Evidence for VAV2 and ZNF433 as susceptibility genes for multiple sclerosis.	Multiple sclerosis	590 European ancestry cases, 825 European ancestry controls	NA	19p13.2	ZNF433	rs3745672-?	NR	1E-6		7.39	[3.32-16.47]	Illumina [~ 300000]	N
677	chr19	12153233	12153234	rs556692495	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.2		rs556692495-?	NR	5E-9		0.0953464	[0.063-0.127] unit decrease	Affymetrix [20259828] (imputed)	N
677	chr19	12172846	12172847	rs149870361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs149870361-?	NR	4E-35				NR [~ 8900000] (imputed)	N
677	chr19	12184265	12184266	rs112518795	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.2	ZNF844	rs112518795-T	0.0792	7E-6		0.0531	[0.03-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
678	chr19	12205003	12205004	rs112909487	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	19p13.2	NR	rs112909487-G		9E-6		0.3745	[0.21-0.54] SD units increase	NR [10700000] (imputed)	N
678	chr19	12206629	12206630	rs117590032	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19p13.2	ZNF788	rs117590032-?	NR	5E-8		0.0583	[0.039-0.077] unit decrease	Affymetrix [5701386] (imputed)	N
678	chr19	12225371	12225372	rs17638629	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	19p13.2	CTC-359D24.2	rs17638629-?	NR	7E-6	(TrailsA)			Illumina [up to 563855]	N
678	chr19	12229975	12229976	rs4804653	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19p13.2		rs4804653-A	NR	2E-6		4.7480764	z score increase	Affymetrix, Illumina [NR] (imputed)	N
678	chr19	12235059	12235060	rs142160996	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	19p13.2	Intergenic	rs142160996-?		2E-6		94.4	[55.4-133.4] unit decrease	Illumina [~ 10000000] (imputed)	N
678	chr19	12245031	12245032	rs187490339	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	19p13.2	NR	rs187490339-A		1E-7		1.363	[NR] unit increase	Illumina [NR]	N
679	chr19	12338150	12338151	rs2459023	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19p13.2		rs2459023-C	NR	4E-6		4.6263523	z score increase	Affymetrix, Illumina [NR] (imputed)	N
679	chr19	12374904	12374905	rs3106727	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19p13.2	NR	rs3106727-?		3E-6	(IL18)	0.1508	[NR] unit increase	Illumina [NR]	N
679	chr19	12375129	12375130	rs73004257	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	19p13.2		rs73004257-?	NR	1E-6		1.237	[1.135-1.349]	Affymetrix [7975321] (imputed)	N
679	chr19	12395931	12395932	rs573342920	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	19p13.2	NR	rs573342920-G		1E-7		1.363	[NR] unit increase	Illumina [NR]	N
679	chr19	12407987	12407988	rs112346514	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	19p13.2	NR	rs112346514-C		2E-6		0.3314	[0.19-0.47] SD units increase	NR [10700000] (imputed)	N
679	chr19	12429781	12429782	rs112896133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19p13.2		rs112896133-A	NR	7E-13		0.0727	[0.053-0.092] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
679	chr19	12429781	12429782	rs112896133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.2	NR	rs112896133-A	NR	5E-14		0.0802	[0.059-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr19	12429781	12429782	rs112896133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.2	NR	rs112896133-A	NR	1E-12		0.0821	[0.059-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
680	chr19	12490328	12490329	rs10413961	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19p13.2		rs10413961-C	NR	5E-6		4.5827107	z score increase	Affymetrix, Illumina [NR] (imputed)	N
680	chr19	12496933	12496934	rs11666603	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.2	NR	rs11666603-C	0.744	2E-9		0.0329	[0.022-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
680	chr19	12497382	12497383	rs59975010	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	19p13.2		rs59975010-T	0.76	4E-14		0.0843	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
680	chr19	12499389	12499390	rs10407238	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	19p13.2	NR	rs10407238-?		3E-6				Illumina [892589]	N
680	chr19	12502456	12502457	rs4804669	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.2	CTD-3105H18.14, ZNF799	rs4804669-A	NR	1E-8		0.0199809	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
680	chr19	12502456	12502457	rs4804669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.2	NR	rs4804669-A	0.217023	2E-17		0.0131493	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
680	chr19	12502456	12502457	rs4804669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.2	NR	rs4804669-A	0.217168	6E-10		0.00918156	[0.0062-0.0121] unit increase	Affymetrix [16585854] (imputed)	N
680	chr19	12502456	12502457	rs4804669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.2	NR	rs4804669-A	0.217168	3E-7		0.00906888	[0.0057-0.0125] unit increase	Affymetrix [16585866] (imputed)	N
680	chr19	12505872	12505873	rs7246440	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	19p13.2	NR	rs7246440-G	NR	9E-11		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
680	chr19	12505872	12505873	rs7246440	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.2	NR	rs7246440-G	0.6201	4E-12		0.0299	[0.021-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
680	chr19	12508060	12508061	rs8101895	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.2	NR	rs8101895-A	0.235738	4E-13		0.00661711	[0.0047-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
680	chr19	12508060	12508061	rs8101895	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.2	NR	rs8101895-A	0.235738	3E-11		0.0068961	[0.0047-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
680	chr19	12509535	12509536	rs4804181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19p13.2		rs4804181-A	NR	1E-8		0.0397	[0.026-0.053] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
680	chr19	12509535	12509536	rs4804181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.2	CTD-3105H18.16, CTD-3105H18.14, ZNF799	rs4804181-C	0.22137	1E-11		0.018342324	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr19	12509535	12509536	rs4804181	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19p13.2	ZNF799	rs4804181-A	0.514	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
680	chr19	12509535	12509536	rs4804181	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19p13.2	NR	rs4804181-C	0.220984	1E-26		0.0368786	[0.03-0.044] unit increase	Affymetrix [16580851] (imputed)	N
680	chr19	12509535	12509536	rs4804181	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	19p13.2	ZNF799	rs4804181-C	0.22	4E-6		0.23	unit increase	Illumina [5600000] (imputed)	N
680	chr19	12514295	12514296	rs7245860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.2		rs7245860-?	NR	1E-8				NR [~ 8900000] (imputed)	N
680	chr19	12530176	12530177	rs17002025	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	19p13.2	NR	rs17002025-G	0.129225	4E-11		0.06184468	[0.043-0.08] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
680	chr19	12530176	12530177	rs17002025	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.2	Intergenic	rs17002025-A	0.1249	7E-10	(MTAG)	0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
680	chr19	12530176	12530177	rs17002025	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19p13.2	Intergenic	rs17002025-A	0.1249	3E-11		0.0289	[0.02-0.037] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
680	chr19	12530176	12530177	rs17002025	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19p13.2	NR	rs17002025-A	NR	2E-9		6.007	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
680	chr19	12530176	12530177	rs17002025	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.2	NR	rs17002025-?	NR	2E-7		5.235	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
680	chr19	12541546	12541547	rs10402252	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19p13.2	ZNF443	rs10402252-G		1E-8		0.012	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
680	chr19	12554632	12554633	rs111821611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.2		rs111821611-?	NR	9E-9				NR [~ 8900000] (imputed)	N
680	chr19	12570084	12570085	rs532591337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	6.24999999999987E-4	8E-23		0.61065215	[0.49-0.73] unit increase	Affymetrix [93095623] (imputed)	N
680	chr19	12570084	12570085	rs532591337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	6.3599999999997E-4	1E-15		0.4917511	[0.37-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr19	12570084	12570085	rs532591337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	6.30000000000019E-4	7E-28		0.615118	[0.5-0.73] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr19	12570084	12570085	rs532591337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	6.28999999999991E-4	2E-28		0.68015754	[0.56-0.8] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr19	12570084	12570085	rs532591337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	8.0E-4	1E-13		0.65079	[0.48-0.82] unit increase	Affymetrix [~ 2500000] (imputed)	N
680	chr19	12570084	12570085	rs532591337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	8.0E-4	6E-10		0.5359643	[0.37-0.71] unit decrease	Affymetrix [~ 2500000] (imputed)	N
680	chr19	12570084	12570085	rs532591337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.2	CTD-3105H18.7, CTD-3105H18.18	rs532591337-A	8.0E-4	1E-12		0.6209873	[0.45-0.79] unit decrease	Affymetrix [~ 2500000] (imputed)	N
681	chr19	12625193	12625194	rs57514868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.2	Intergenic	rs57514868-A	0.8082	4E-8	(MTAG)	0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
681	chr19	12678890	12678891	rs573155514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.2	CTD-2192J16.20	rs573155514-C	2.0E-4	2E-9		0.9686954	[0.65-1.29] unit increase	Affymetrix [~ 2500000] (imputed)	N
681	chr19	12691184	12691185	rs7247513	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	19p13.2	NR	rs7247513-?	NR	2E-6	(addtive)			Affymetrix [NR]	N
681	chr19	12706990	12706991	rs6511826	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.2	ZNF490	rs6511826-G	0.0868843	1E-8		0.013982	[0.0092-0.0188] unit increase	Affymetrix [12370749]	N
682	chr19	12720738	12720739	rs74789101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.13		rs74789101-?	NR	4E-13				NR [~ 8900000] (imputed)	N
682	chr19	12752424	12752425	rs10411619	24383474	Manichaikul A	2014-01-02	Am J Respir Crit Care Med	Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study.	Pulmonary emphysema	2,587 European ancestry individuals, 2,510 African American individuals, 2,113 Hispanic individuals, 704 Chinese ancestry individuals	6,023 European ancestry individuals	19p13.13	MAN2B1	rs10411619-T	0.956	1E-9	(Hispanic)	0.177	[0.12-0.23] unit decrease	Affymetrix [897981]	N
682	chr19	12772089	12772090	rs1133330	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	19p13.13		rs1133330-T	0.36	2E-10		0.0603	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
682	chr19	12772262	12772263	rs2303731	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EID3	5,364 Icelandic ancestry individuals	NA	19p13.13		rs2303731-C	0.3488	5E-14		0.150637	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
682	chr19	12775835	12775836	rs117130511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.13		rs117130511-?	NR	2E-9				NR [~ 8900000] (imputed)	N
682	chr19	12780338	12780339	rs186561556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.13		rs186561556-?	NR	1E-13				NR [~ 8900000] (imputed)	N
682	chr19	12782422	12782423	rs12976574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.13		rs12976574-?	NR	3E-12				NR [~ 8900000] (imputed)	N
682	chr19	12789975	12789976	rs57680473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.13	DHPS	rs57680473-G	0.014305	3E-9		0.05665901	[0.038-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr19	12793533	12793535	rs376522078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.13	CTD-2192J16.26	rs376522078-C	0.013893	1E-10		0.0883055	[0.068-0.108] unit increase	Affymetrix [93095623] (imputed)	N
682	chr19	12813682	12813683	rs16978630	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or multiple sclerosis	3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls	NA	19p13.13	TNPO2	rs16978630-?	NR	9E-8		1.3333333		Illumina [~ 460000] (imputed)	N
683	chr19	12876963	12876964	rs897804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.13		rs897804-?	NR	2E-11				NR [~ 8900000] (imputed)	N
683	chr19	12879995	12879996	rs149024142	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.13	HOOK2	rs149024142-A	0.024698	3E-9		0.044273	[0.03-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr19	12889223	12889224	rs11667764	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	19p13.13	NR	rs11667764-?	NR	6E-6				Illumina [5946283] (imputed)	N
683	chr19	12890594	12890595	rs79814575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.13		rs79814575-?	NR	8E-10				NR [~ 8900000] (imputed)	N
683	chr19	12904399	12904400	rs17884482	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs17884482-T	0.0704	4E-6	(Superior Parietal)	29.71707	[17.07-42.36] unit decrease	Affymetrix, Illumina [NR]	N
683	chr19	12905245	12905246	rs1205170	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	19p13.13	NR	rs1205170-A	0.516	7E-6		0.016024476	[0.009-0.023] unit decrease	Affymetrix [up to 6544775] (imputed)	N
683	chr19	12908958	12908959	rs543066687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.13	HOOK2, PRDX2, CTD-2659N19.10	rs543066687-T	7.50000000000473E-5	3E-21		1.5925254	[1.26-1.92] unit increase	Affymetrix [93095623] (imputed)	N
683	chr19	12917685	12917686	rs13345720	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	19p13.13	RNASEH2A	rs13345720-C	0.34	2E-7	(BDRPRED, AA)	1.83	[1.14-2.52] unit decrease	Illumina [NR] (imputed)	N
683	chr19	12917685	12917686	rs13345720	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	19p13.13	RNASEH2A	rs13345720-C	0.34	1E-7	(BDRABS, AA)	0.05	[0.03-0.07] unit decrease	Illumina [NR] (imputed)	N
683	chr19	12922502	12922503	rs4804732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19p13.13	Intergenic	rs4804732-A	0.3601	2E-17		0.0172	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
683	chr19	12923724	12923725	rs3786712	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.13	Intergenic	rs3786712-A	0.3603	9E-19	(MTAG)	0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
683	chr19	12932268	12932269	rs7255045	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	19p13.13	NR	rs7255045-?	NR	5E-33				NR [2500000] (imputed)	N
683	chr19	12932268	12932269	rs7255045	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	19p13.13	RTBDN	rs7255045-A	NR	2E-12		0.0	[0.002-0.004] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr19	12938470	12938471	rs755734872	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.13	FARSA	rs755734872-T	5.0E-4	8E-6		2.37	[1.62-3.46]	Affymetrix, Illumina [~ 27000000] (imputed)	N
683	chr19	12947058	12947059	rs73004624	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.13	NR	rs73004624-T	NR	1E-10		0.0215	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
683	chr19	12948233	12948234	rs73925218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs73925218-A	0.037308	1E-17		0.05181129	[0.04-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr19	12957649	12957650	rs117758012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs117758012-T	0.059578	2E-13		0.034839205	[0.026-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
683	chr19	12957649	12957650	rs117758012	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.13	NR	rs117758012-T	0.0574	5E-7	(EA)	0.0718	[0.044-0.1] unit increase	Illumina [~ 11800000] (imputed)	N
683	chr19	12957649	12957650	rs117758012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.13	MAST1, HOOK2	rs117758012-T	0.0606	9E-10		0.04640512	[0.032-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
683	chr19	12960425	12960426	rs112858709	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.13	NR	rs112858709-T	0.036691	1E-14		0.037943	[0.028-0.048] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
683	chr19	12969290	12969291	rs145060708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.13	Intergenic	rs145060708-T	0.0576	9E-18	(MTAG)	0.0305	[0.024-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
683	chr19	12969290	12969291	rs145060708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	19p13.13	Intergenic	rs145060708-C	0.9424	2E-10		0.0308	[0.021-0.04] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
683	chr19	12971932	12971933	rs56160517	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.13	Intergenic	rs56160517-A	0.2417	3E-12	(MTAG)	0.0187	[0.013-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
683	chr19	12971932	12971933	rs56160517	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.13	NR	rs56160517-?	NR	8E-6		4.456	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
683	chr19	12971932	12971933	rs56160517	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	19p13.13	MAST1	rs56160517-A	NR	3E-8		0.020023877	[0.013-0.027] unit decrease	Affymetrix [NR]	N
683	chr19	12975607	12975608	rs7256794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.13	NR	rs7256794-C	NR	4E-9		0.0373	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
683	chr19	12975607	12975608	rs7256794	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs7256794-C	0.0415297	8E-14				Affymetrix, Illumina [24588908] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219295	3E-17		0.026835373	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219181	2E-15		0.023837099	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219214	3E-33		0.0740632	[0.069-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219187	1E-20		0.029269835	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219305	3E-18		0.023488559	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.219282	5E-64		0.045509335	[0.04-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs11672387-C	0.778569	7E-42				Affymetrix, Illumina [22063850] (imputed)	N
684	chr19	12981252	12981253	rs11672387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.13	NR	rs11672387-C	0.782134	4E-44		0.032162	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
684	chr19	12981252	12981253	rs11672387	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.13	DNASE2	rs11672387-G	NR	5E-10		0.0291897	[0.02-0.039] unit increase	Affymetrix [16832071] (imputed)	N
684	chr19	12981252	12981253	rs11672387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.2174	1E-21		0.04172055	[0.033-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	12981252	12981253	rs11672387	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.13	HOOK2, MAST1	rs11672387-G	0.2174	4E-16		0.03552593	[0.027-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	12982232	12982233	rs59252007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19p13.13		rs59252007-A	0.051177	1E-25		0.074269	[0.06-0.088] unit increase	Illumina [13479135] (imputed)	N
684	chr19	12982232	12982233	rs59252007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19p13.13		rs59252007-A	0.051195	2E-39		0.107385	[0.091-0.123] unit decrease	Illumina [13476266] (imputed)	N
684	chr19	12982232	12982233	rs59252007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19p13.13		rs59252007-A	0.051259	1E-34		0.101177	[0.085-0.117] unit decrease	Illumina [13476299] (imputed)	N
684	chr19	12982232	12982233	rs59252007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	19p13.13	NR	rs59252007-C	0.948897	6E-36		0.116808	[0.099-0.135] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
684	chr19	12982232	12982233	rs59252007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	19p13.13	NR	rs59252007-C	0.948902	4E-33		0.112612	[0.094-0.131] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
684	chr19	12982232	12982233	rs59252007	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	19p13.13	MAST1	rs59252007-?	NR	4E-26		0.1021	[0.083-0.121] unit decrease novel	Illumina [6108953] (imputed)	N
684	chr19	12982290	12982291	rs117062702	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	19p13.13	MAST1	rs117062702-?	NR	5E-19		0.08591	[0.067-0.105] unit increase novel	Illumina [6108953] (imputed)	N
684	chr19	12987880	12987881	rs2418568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19p13.13	DNASE2	rs2418568-G	0.2735	6E-9		0.02318841	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	12993144	12993144	rs549722413	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	CTD-2265O21.7	rs549722413-GT	0.206074	2E-10		0.0579344	[0.053-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12993512	12993513	rs75921602	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	19p13.13	DNASE2, KLF1	rs75921602-?	NR	4E-32		0.1143	[0.095-0.133] unit decrease novel	Illumina [6108953] (imputed)	N
684	chr19	12994139	12994140	rs12609744	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.13	NR	rs12609744-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
684	chr19	12994316	12994339	rs111933865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.13	CTD-2265O21.7	rs111933865-G	0.243629	6E-11		0.016991135	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	12994316	12994339	rs111933865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.13	CTD-2265O21.7	rs111933865-G	0.243645	4E-15		0.0204168	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12995810	12995811	rs397514634	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	19p13.13		rs397514634-?	NR	2E-10		1.33251	[0.94-1.72] unit increase	NR [9800000] (imputed)	N
684	chr19	12995833	12995833	rs397514445	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	19p13.13		rs397514445-?	NR	8E-14		0.530391	[0.38-0.68] unit decrease	NR [9800000] (imputed)	N
684	chr19	12996499	12996500	rs2072596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	19p13.13	NR	rs2072596-A	0.951501	2E-19		0.078077	[0.061-0.095] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
684	chr19	12996739	12996740	rs2072597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.13		rs2072597-?	NR	4E-11				NR [~ 8900000] (imputed)	N
684	chr19	12996739	12996740	rs2072597	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.13	NA	rs2072597-A	0.6946	2E-9		0.0125	[0.0084-0.0166] unit decrease	NR [~ 27400000] (imputed)	N
684	chr19	12998204	12998205	rs3817621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs3817621-C	0.239386	6E-40		0.03945344	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12998204	12998205	rs3817621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs3817621-C	0.239376	6E-49		0.038506746	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12998204	12998205	rs3817621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs3817621-C	0.239446	3E-31		0.030337257	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	12998204	12998205	rs3817621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs3817621-C	0.239377	1E-47		0.037836697	[0.033-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12998204	12998205	rs3817621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.13	GCDH, KLF1	rs3817621-C	0.2391	1E-27		0.04619069	[0.038-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	12998204	12998205	rs3817621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.13	GCDH, KLF1	rs3817621-C	0.2391	2E-19		0.03806749	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	12999457	12999458	rs8110787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.13		rs8110787-T	NR	1E-103		0.0414	[0.038-0.045] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
684	chr19	12999457	12999458	rs8110787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.13		rs8110787-T	NR	1E-168		0.0614	[0.057-0.066] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
684	chr19	12999457	12999458	rs8110787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.13		rs8110787-T	NR	1E-206		0.068	[0.064-0.072] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
684	chr19	12999457	12999458	rs8110787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19p13.13		rs8110787-T	NR	4E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
684	chr19	12999457	12999458	rs8110787	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.13		rs8110787-C	0.609	3E-149		0.29	[-0.31--0.27] % decrease	Affymetrix [NR] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs8110787-T	0.390064	6E-68		0.10483641	[0.093-0.117] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs8110787-T	0.390212	3E-61		0.058419805	[0.051-0.065] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs8110787-T	0.390227	3E-34		0.03176829	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	KLF1, GCDH	rs8110787-T	0.390102	2E-109		0.0745467	[0.07-0.079] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs8110787-T	0.334655	2E-162				Affymetrix, Illumina [24332387] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.13	NR	rs8110787-T	0.389075	4E-151		0.049853	[0.046-0.054] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs8110787-T	0.343139	1E-335				Affymetrix, Illumina [24246363] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.13	NR	rs8110787-T	0.389106	4E-318		0.071203	[0.068-0.075] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
684	chr19	12999457	12999458	rs8110787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs8110787-T	0.338057	3E-364				Affymetrix, Illumina [20825802] (imputed)	N
684	chr19	12999457	12999458	rs8110787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.13		rs8110787-?	NR	7E-134				NR [~ 8900000] (imputed)	N
684	chr19	12999457	12999458	rs8110787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.13		rs8110787-?	NR	1E-300				NR [~ 8900000] (imputed)	N
684	chr19	13000246	13000247	rs62108438	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.13		rs62108438-C	NR	2E-11		0.02	[0.02-0.02] unit decrease	Illumina [92652022]	N
684	chr19	13000246	13000247	rs62108438	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.13		rs62108438-C	NR	5E-18		0.32	[0.24-0.4] unit increase	Illumina [97506867]	N
684	chr19	13000246	13000247	rs62108438	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19p13.13		rs62108438-C	NR	4E-20		0.14	[0.12-0.16] unit increase	Illumina [94681438]	N
684	chr19	13000549	13000550	rs56397034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.13	KLF1, GCDH, AD000092.3	rs56397034-C	0.390224	4E-121		0.08631155	[0.079-0.094] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13000549	13000550	rs56397034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.13	NR	rs56397034-C	0.388611	3E-348		0.078431	[0.075-0.082] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
684	chr19	13000549	13000550	rs56397034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.13	GCDH, KLF1, AD000092.3	rs56397034-C	0.3891	4E-42		0.04952539	[0.042-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13000549	13000550	rs56397034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.13	GCDH, KLF1, AD000092.3	rs56397034-C	0.3891	3E-79		0.06808716	[0.061-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13000549	13000550	rs56397034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.13	GCDH, KLF1, AD000092.3	rs56397034-C	0.3892	5E-86		0.0712254	[0.064-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13001546	13001547	rs11085824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.13		rs11085824-G	NR	2E-31		0.026	[0.022-0.03] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
684	chr19	13001546	13001547	rs11085824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.13	KLF1, GCDH, AD000092.3	rs11085824-G	0.377026	3E-11		0.01754829	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13001546	13001547	rs11085824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.13	KLF1, GCDH, AD000092.3	rs11085824-G	0.376909	5E-29		0.0350247	[0.031-0.039] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13001546	13001547	rs11085824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs11085824-G	0.319895	8E-64				Affymetrix, Illumina [21126107] (imputed)	N
684	chr19	13001546	13001547	rs11085824	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.13	NR	rs11085824-G	0.375338	2E-62		0.034369	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
684	chr19	13001546	13001547	rs11085824	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	19p13.13	NR	rs11085824-?	NR	1E-8				NR [2500000] (imputed)	N
684	chr19	13001546	13001547	rs11085824	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	19p13.13	NR	rs11085824-?	NR	8E-17				NR [2500000] (imputed)	N
684	chr19	13001546	13001547	rs11085824	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	19p13.13	NR	rs11085824-?	NR	1E-8				NR [2500000] (imputed)	N
684	chr19	13001546	13001547	rs11085824	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19p13.13	GCDH, KLF1, AD000092.3	rs11085824-G	0.3757	1E-16		0.02947577	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13001546	13001547	rs11085824	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	19p13.13	GCDH	rs11085824-G	NR	1E-11		0.0	[0.003-0.005] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
684	chr19	13002383	13002384	rs3745647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.13		rs3745647-?	NR	2E-41				NR [~ 8900000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19p13.13		rs1799918-?	0.6619	2E-12		0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	19p13.13		rs1799918-?	0.6365	2E-7		0.0238	[0.015-0.033] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	19p13.13		rs1799918-?	0.6619	2E-12		0.2862	[0.21-0.37] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	19p13.13		rs1799918-?	0.6189	6E-6		0.3003	[0.17-0.43] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	19p13.13		rs1799918-?	0.6365	8E-7		0.2722	[0.16-0.38] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19p13.13		rs1799918-?	0.6619	2E-14		0.1187	[0.088-0.149] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002399	13002400	rs1799918	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	19p13.13		rs1799918-?	0.6365	8E-9		0.1251	[0.083-0.168] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
684	chr19	13002562	13002563	rs2242517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.13	GCDH	rs2242517-G	0.425903	2E-11		0.04289619	[0.03-0.055] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13006684	13006685	rs2238641	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs2238641-C	0.329901	1E-11				Affymetrix, Illumina [24558453] (imputed)	N
684	chr19	13010519	13010520	rs8012	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.13	GCDH	rs8012-A	0.329866	2E-30	(glutarylcarnitine (C5-DC))	0.277	[0.23-0.32] unit increase	Illumina [13039987] (imputed)	N
684	chr19	13010519	13010520	rs8012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.13	GCDH	rs8012-G	0.548327	1E-11		0.020997815	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13010519	13010520	rs8012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.13	GCDH	rs8012-G	0.548415	2E-11		0.020924034	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13010519	13010520	rs8012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	GCDH	rs8012-G	0.548342	2E-41		0.0181532	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13010519	13010520	rs8012	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.13	GCDH	rs8012-G	0.548346	1E-44		0.043303035	[0.037-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13010519	13010520	rs8012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.13	GCDH	rs8012-G	0.55	1E-10		0.02250041	[0.016-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13010519	13010520	rs8012	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.13	GCDH	rs8012-G	0.5498	2E-10		0.02232743	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13010519	13010520	rs8012	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19p13.13	GCDH	rs8012-A	0.44	6E-45	(glutaroyl carnitine)	0.037	[0.031-0.043] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
684	chr19	13010642	13010643	rs9384	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.13	NR	rs9384-G	0.6566	8E-23		0.0404	[0.032-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
684	chr19	13011808	13011809	rs62109862	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.13		rs62109862-A	0.1418	3E-11		0.0136	[0.0097-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
684	chr19	13017947	13017948	rs75334886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.13	SYCE2, GCDH	rs75334886-C	0.032514	2E-23		0.062378537	[0.05-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13020505	13020506	rs56195122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.13	SYCE2, GCDH	rs56195122-A	0.032359	1E-41		0.08501618	[0.073-0.097] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13021358	13021359	rs3115524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.13		rs3115524-?	NR	6E-8				NR [~ 8900000] (imputed)	N
684	chr19	13021358	13021359	rs3115524	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	19p13.13	NR	rs3115524-?	NR	2E-12		0.04556	[0.033-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
684	chr19	13021500	13021501	rs188028380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.13	SYCE2, GCDH	rs188028380-T	0.035778	2E-14		0.047626548	[0.035-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13024249	13024250	rs741702	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.13	NR	rs741702-A	0.3902	2E-8	(GCDH)	0.03679	NR unit decrease	Illumina [1671387] (imputed)	N
684	chr19	13024249	13024250	rs741702	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	19p13.13	SYCE2, CALR, FARSA	rs741702-A	0.35	8E-20	(EA, MCH)	0.006	[-0.00184-0.01384] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
684	chr19	13026411	13026412	rs77440950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.13	SYCE2	rs77440950-C	0.138042	7E-13		0.0371429	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13031264	13031265	rs34952285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.13	SYCE2	rs34952285-C	0.783421	1E-9		0.017069757	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13032616	13032617	rs35354907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19p13.13		rs35354907-A	NR	7E-21		0.0224	[0.018-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
684	chr19	13032616	13032617	rs35354907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.13	SYCE2	rs35354907-A	0.609614	7E-13		0.017095327	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
684	chr19	13032939	13032940	rs11673346	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	19p13.13	NR	rs11673346-?	NR	3E-15		0.05171	[0.039-0.065] unit increase novel	Illumina [6108953] (imputed)	N
684	chr19	13032939	13032940	rs11673346	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	19p13.13	NR	rs11673346-?	NR	1E-19		0.05974	[0.047-0.073] unit increase novel	Illumina [6108953] (imputed)	N
684	chr19	13037709	13037710	rs73925236	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.13	FARSA	rs73925236-A	0.0326	6E-14		0.07515767	[0.056-0.095] unit increase	Affymetrix [~ 2500000] (imputed)	N
684	chr19	13037733	13037734	rs62109865	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19p13.13	NR	rs62109865-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
684	chr19	13038414	13038415	rs3111316	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.13	NR	rs3111316-G	0.4116	3E-21		0.0442	[0.035-0.053] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
684	chr19	13038414	13038415	rs3111316	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19p13.13	FARSA	rs3111316-A	0.5887	1E-12		0.0019	[0.0011-0.0027] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
684	chr19	13038414	13038415	rs3111316	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.13	FARSA	rs3111316-A	0.5885	6E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
684	chr19	13042628	13042629	rs111757774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.13		rs111757774-?	NR	4E-9				NR [~ 8900000] (imputed)	N
684	chr19	13053033	13053034	rs2974751	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19p13.13	CALR	rs2974751-A	0.376	7E-12		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
684	chr19	13056556	13056557	rs2974752	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATF6B	5,359 Icelandic ancestry individuals	NA	19p13.13		rs2974752-G	0.4439	3E-23		0.183057	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
684	chr19	13062426	13062427	rs45495792	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.13	NR	rs45495792-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
684	chr19	13062426	13062427	rs45495792	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	19p13.13	DNASE2, KLF1, GCDH, SYCE2, FARSA, CALR, RAD23A, GADD45GIP1, DAND5, NFIX	rs45495792-G	0.1706	1E-6		2.11	[1.81-2.41]	Illumina [8809853] (imputed)	N
684	chr19	13078285	13078286	rs62109874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.13	DAND5	rs62109874-T	0.073739	4E-15		0.037434716	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
684	chr19	13090415	13090416	rs111683602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.13	Intergenic	rs111683602-A	0.9585	1E-11	(MTAG)	0.0282	[0.02-0.036] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
684	chr19	13094297	13094298	rs7409148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19p13.13		rs7409148-T	NR	4E-8		0.0829	[0.053-0.112] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
684	chr19	13094297	13094298	rs7409148	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	19p13.13	DAND5	rs7409148-C	0.185829	4E-8		0.082887836	[0.053-0.112] unit decrease	Affymetrix [7288503] (imputed)	N
684	chr19	13096284	13096285	rs4334415	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs4334415-A	0.5692	8E-9	(Superior Parietal)	16.81981	[11.11-22.53] unit decrease	Affymetrix, Illumina [NR]	N
684	chr19	13098992	13098993	rs11881865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.13		rs11881865-?	NR	7E-12				NR [~ 8900000] (imputed)	N
684	chr19	13104026	13104027	rs10422323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.13	NFIX	rs10422323-A	0.125448	2E-11		0.024704475	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13107827	13107828	rs73925240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	NFIX	rs73925240-T	0.125265	2E-12		0.0543003	[0.048-0.06] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13108621	13108622	rs4926172	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.13	NR	rs4926172-?	NR	4E-7		5.074	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
685	chr19	13109530	13109531	rs118040169	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.13	NR	rs118040169-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
685	chr19	13109530	13109531	rs118040169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.13		rs118040169-A	0.965	8E-11		0.0248	[0.017-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
685	chr19	13109530	13109531	rs118040169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.13	Intergenic	rs118040169-A	0.965	8E-13	(MTAG)	0.0255	[0.018-0.033] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
685	chr19	13109762	13109763	rs68175985	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	19p13.13		rs68175985-?	NR	5E-17				NR [9705931] (imputed)	N
685	chr19	13109762	13109763	rs68175985	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	19p13.13	NFIX	rs68175985-?		3E-11	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
685	chr19	13109762	13109763	rs68175985	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	19p13.13	NFIX	rs68175985-?		3E-26	(Superior parietal)			Affymetrix, Illumina [NR] (imputed)	N
685	chr19	13109762	13109763	rs68175985	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs68175985-A	0.1603	3E-19	(Inferior Parietal)	39.074085	[30.55-47.6] unit increase	Affymetrix, Illumina [NR]	N
685	chr19	13109762	13109763	rs68175985	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs68175985-A	0.16	1E-23	(Superior Parietal)	41.180984	[33.12-49.24] unit decrease	Affymetrix, Illumina [NR]	N
685	chr19	13109954	13109955	rs73006822	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.13		rs73006822-T	0.16	4E-55		15.64	z score increase	Affymetrix [9061022] (imputed)	N
685	chr19	13109954	13109955	rs73006822	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.13		rs73006822-T	0.16	4E-27		10.79	z score increase	Affymetrix [9061022] (imputed)	N
685	chr19	13109954	13109955	rs73006822	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.13		rs73006822-T	0.16	1E-54		15.58	z score increase	Affymetrix [9061022] (imputed)	N
685	chr19	13109954	13109955	rs73006822	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.13	NR	rs73006822-T	0.1504	1E-17				NR [9056863] (imputed)	N
685	chr19	13109954	13109955	rs73006822	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.13	NR	rs73006822-T	0.1504	1E-17				NR [9056863] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	19p13.13	MARCH4, SMARCAL1, RPL37A	rs73006822-?		4E-10				NR [7428630] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	19p13.13	C2orf73	rs73006822-?		3E-17				NR [7428630] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	19p13.13	ANKRD32, MCTP1	rs73006822-?		9E-23				NR [7428630] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	19p13.13	NR	rs73006822-?		2E-16				NR [7428630] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19p13.13	DAND5, NFIX, LYL1, TRMT1	rs73006822-?		2E-21				NR [7428630] (imputed)	N
685	chr19	13109954	13109955	rs73006822	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs73006822-T	0.1491	7E-11	(Middle Temporal)	18.095583	[12.67-23.53] unit increase	Affymetrix, Illumina [NR]	N
685	chr19	13109954	13109955	rs73006822	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs73006822-T	0.1484	3E-13	(Banks of the Superior Temporal Sulcus)	6.9501524	[5.08-8.82] unit increase	Affymetrix, Illumina [NR]	N
685	chr19	13109954	13109955	rs73006822	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19p13.13	NR	rs73006822-?	NR	5E-9	(left superior parietal)			NR [9227495] (imputed)	N
685	chr19	13113640	13113641	rs10411958	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	19p13.13	NR	rs10411958-T	0.49006	3E-8		0.03487871	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
685	chr19	13113640	13113641	rs10411958	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.13	NR	rs10411958-C	0.532552	2E-9		0.00680942	[0.0045-0.0091] unit increase	Affymetrix [16582621] (imputed)	N
685	chr19	13113640	13113641	rs10411958	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.13	NR	rs10411958-C	0.532552	2E-7		0.00656776	[0.0041-0.009] unit increase	Affymetrix [16582614] (imputed)	N
685	chr19	13113640	13113641	rs10411958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19p13.13	Intergenic	rs10411958-T	0.4687	2E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
685	chr19	13113640	13113641	rs10411958	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19p13.13	NR	rs10411958-T	NR	3E-9		5.948	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
685	chr19	13114433	13114434	rs10413329	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	19p13.13	NFIX	rs10413329-A	NR	2E-9		0.017926283	[0.012-0.024] unit increase	Affymetrix [NR]	N
685	chr19	13118709	13118710	rs146574056	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.13	NFIX	rs146574056-G	0.037301	1E-12		0.041635513	[0.03-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13123187	13123188	rs56252104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.13	NFIX	rs56252104-T	0.260861	4E-16		0.020423487	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13123187	13123188	rs56252104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs56252104-T	0.250893	3E-15				Affymetrix, Illumina [23472807] (imputed)	N
685	chr19	13123187	13123188	rs56252104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.13	NR	rs56252104-T	0.260661	3E-18		0.018921	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
685	chr19	13128860	13128861	rs10410950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.13	NFIX	rs10410950-A	0.049999	3E-9		0.030094283	[0.02-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13128860	13128861	rs10410950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs10410950-A	0.0562144	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
685	chr19	13128860	13128861	rs10410950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.13	NR	rs10410950-A	0.050917	5E-11		0.027842	[0.02-0.036] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
685	chr19	13134500	13134501	rs1058993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.13	NFIX	rs1058993-T	0.0466	2E-10		0.05493343	[0.038-0.072] unit increase	Affymetrix [~ 2500000] (imputed)	N
685	chr19	13139659	13139660	rs16978854	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.13	NR	rs16978854-A	0.0374	3E-12		0.0334	[0.024-0.043] unit decrease	NR [~ 27400000] (imputed)	N
685	chr19	13153034	13153035	rs4926298	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	19p13.13	NFIX	rs4926298-G	NR	6E-10		1.1321515	[1.08856333588057-1.17748461027614]	Illumina [at least 6195093] (imputed)	N
685	chr19	13157539	13157540	rs17639568	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19p13.13	NFIX	rs17639568-A	NR	1E-8		0.0185393	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
685	chr19	13158276	13158277	rs78269692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.13	NFIX	rs78269692-C	0.052243	8E-19		0.04417615	[0.034-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13158276	13158277	rs78269692	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.13	NFIX1	rs78269692-C	0.05	2E-9	(EA)	1.09	[1.04-1.13] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
685	chr19	13161668	13161669	rs34720245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.13		rs34720245-?	NR	5E-11				NR [~ 8900000] (imputed)	N
685	chr19	13161668	13161669	rs34720245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.13		rs34720245-?	NR	1E-30				NR [~ 8900000] (imputed)	N
685	chr19	13166479	13166480	rs62109902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.13	NFIX	rs62109902-A	0.095309	1E-15		0.0441642	[0.037-0.051] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13171423	13171424	rs1382358	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19p13.13		rs1382358-T	0.90672	1E-7		37.425163	z score increase	NR [6814003]	N
685	chr19	13171423	13171424	rs1382358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.13	NFIX	rs1382358-C	0.130652	2E-10		0.02191929	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13171423	13171424	rs1382358	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	19p13.13	NR	rs1382358-T	0.8701	2E-8		0.019513706	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
685	chr19	13173849	13173850	rs75460821	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.13	NFIX	rs75460821-C	0.108636	5E-16		0.030018996	[0.023-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13176727	13176728	rs117533700	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.13	NFIX	rs117533700-T	0.036914	3E-17		0.050032627	[0.038-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13176727	13176728	rs117533700	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.13	NFIX	rs117533700-T	0.0365	4E-9		0.05649422	[0.038-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
685	chr19	13179661	13179662	rs8113263	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.13	NFIX	rs8113263-A	0.05	2E-6	(EA, men)	0.059	[0.034-0.083] kg/m2 increase	Affymetrix, Illumina [2550021]	N
685	chr19	13201605	13201606	rs113628353	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.13	NFIX, LYL1	rs113628353-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
685	chr19	13203623	13203624	rs149262789	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.13	NR	rs149262789-?	NR	7E-6		0.0076764	[0.0043-0.011] unit decrease	Affymetrix [805426] (imputed)	N
685	chr19	13204413	13204414	rs144412371	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.13	NFIX	rs144412371-C	0.962808	4E-15		0.0383698	[0.029-0.048] unit increase	NR [13737936] (imputed)	N
685	chr19	13204413	13204414	rs144412371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.13		rs144412371-?	NR	2E-15				NR [~ 8900000] (imputed)	N
685	chr19	13204413	13204414	rs144412371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.13	NFIX	rs144412371-G	0.0388	2E-9		0.05671791	[0.038-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
685	chr19	13207283	13207284	rs11555274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19p13.13	Intergenic	rs11555274-C	0.1152	2E-10	(MTAG)	0.0231	[0.016-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
685	chr19	13207283	13207284	rs11555274	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	19p13.13	NFIX	rs11555274-C	NR	2E-8		0.027320692	[0.018-0.037] unit decrease	Affymetrix [NR]	N
685	chr19	13211569	13211570	rs142613662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.13	LYL1	rs142613662-A	0.0163219999999999	7E-15		0.07090377	[0.053-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13211569	13211570	rs142613662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs142613662-G	0.984081	1E-14				Affymetrix, Illumina [17210439] (imputed)	N
685	chr19	13212024	13212025	rs12151248	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	19p13.13	LYL1	rs12151248-T	0.1178	2E-14		0.024579974	[0.018-0.031] unit decrease	Affymetrix [up to 18485882] (imputed)	N
685	chr19	13212024	13212025	rs12151248	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	19p13.13	LYL1	rs12151248-T	NR	4E-10		0.012425	[0.0085-0.0163] unit decrease	Affymetrix [18485882] (imputed)	N
685	chr19	13212024	13212025	rs12151248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.13		rs12151248-T	0.1141	4E-11		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
685	chr19	13212024	13212025	rs12151248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.13	Intergenic	rs12151248-T	0.1141	2E-13	(MTAG)	0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
685	chr19	13212024	13212025	rs12151248	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	19p13.13	LYL1	rs12151248-?	NR	3E-9		5.919	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
685	chr19	13212127	13212128	rs1003392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.13	LYL1	rs1003392-G	0.058107	5E-10		0.030647863	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13212213	13212214	rs1003393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.13		rs1003393-T	NR	2E-14		0.071	[0.053-0.089] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
685	chr19	13212213	13212214	rs1003393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.13	LYL1	rs1003393-T	0.016517	7E-13		0.064219594	[0.047-0.082] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13212213	13212214	rs1003393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.13	LYL1	rs1003393-T	0.016514	6E-16		0.072311394	[0.055-0.09] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13212213	13212214	rs1003393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.13	NR	rs1003393-T	0.0168482	2E-20				Affymetrix, Illumina [23467995] (imputed)	N
685	chr19	13212213	13212214	rs1003393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.13	NR	rs1003393-T	0.01659	9E-23		0.077779	[0.062-0.093] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
685	chr19	13212213	13212214	rs1003393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.13	NR	rs1003393-C	0.983534	2E-15		0.062439	[0.047-0.078] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
685	chr19	13213800	13213801	rs117861106	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.13		rs117861106-C	0.949	3E-10				Affymetrix [10369434] (imputed)	N
685	chr19	13220702	13220703	rs35601737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	19p13.13		rs35601737-G	NR	8E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
685	chr19	13220702	13220703	rs35601737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.13	TRMT1	rs35601737-G	0.306877	9E-10		0.015038686	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
685	chr19	13220702	13220703	rs35601737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.13	TRMT1	rs35601737-G	0.307085	2E-10		0.01551826	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
685	chr19	13220702	13220703	rs35601737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.13		rs35601737-?	NR	2E-11				NR [~ 8900000] (imputed)	N
685	chr19	13225485	13225486	rs12977417	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.13	TRMT1	rs12977417-A	0.1769	4E-9		0.02883879	[0.019-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
685	chr19	13225485	13225486	rs12977417	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.13	TRMT1	rs12977417-A	0.177	7E-9		0.02828188	[0.019-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
686	chr19	13243303	13243304	rs16995252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.13	NR	rs16995252-G	NR	4E-9		0.0312	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
686	chr19	13245967	13245968	rs10408126	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.13	NACC1	rs10408126-A	0.034	4E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
686	chr19	13253002	13253003	rs116712274	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	19p13.13	CTC-250I14.3	rs116712274-A	0.05788	3E-8		0.024494935	[0.016-0.033] unit decrease	Affymetrix [up to 18485882] (imputed)	N
686	chr19	13258289	13258290	rs7508633	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	19p13.13	STX10	rs7508633-G	NR	2E-9		1.06	[1.04-1.09]	Affymetrix, Illumina [12923718] (imputed)	N
686	chr19	13263054	13263055	rs55724477	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19p13.13	NR	rs55724477-?	NR	2E-9		0.062	[0.042-0.082] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
686	chr19	13264397	13264398	rs1042164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.13		rs1042164-T	NR	1E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
686	chr19	13264397	13264398	rs1042164	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.13	STX10	rs1042164-T	0.1837	2E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
686	chr19	13264397	13264398	rs1042164	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.13	IER2	rs1042164-?	NR	2E-8		0.0478831	[0.031-0.065] unit decrease	Illumina [27896057] (imputed)	N
686	chr19	13265269	13265270	rs3745992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.13		rs3745992-?	NR	2E-19				NR [~ 8900000] (imputed)	N
686	chr19	13268825	13268826	rs111730030	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.13	NR	rs111730030-T	0.0484	2E-8	(EA)	0.0837	[0.054-0.113] unit increase	Illumina [~ 11800000] (imputed)	N
686	chr19	13268825	13268826	rs111730030	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	19p13.13	NR	rs111730030-T	0.0575	8E-9		0.029039804	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
686	chr19	13285292	13285293	rs8110682	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	19p13.13	IER2	rs8110682-T	0.6348	3E-10		0.0695	[0.048-0.091] unit decrease	NR [9744772] (imputed)	N
686	chr19	13285833	13285834	rs74439972	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19p13.13	NR	rs74439972-?	NR	5E-9	(left superior parietal)			NR [9227495] (imputed)	N
686	chr19	13285833	13285834	rs74439972	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.13	Intergenic	rs74439972-A	0.222	1E-8	(MTAG)	0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
686	chr19	13290785	13290786	rs548119374	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	19p13.13		rs548119374-?	NR	1E-14				NR [9705931] (imputed)	N
686	chr19	13292262	13292263	rs62109939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.13		rs62109939-T	0.8007	4E-8	(conditional-joint)	0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
686	chr19	13292744	13292745	rs8103974	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19p13.13	NR	rs8103974-T	0.5344	4E-10	(Superior Parietal)	21.277533	[14.61-27.95] unit increase	Affymetrix, Illumina [NR]	N
686	chr19	13320503	13320504	rs79459566	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		19p13.13	NR	rs79459566-T	0.04	5E-6		1.71	[1.36-2.15]	Illumina [~ 8000000] (imputed)	N
686	chr19	13332009	13332010	rs11085835	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	19p13.13	NR	rs11085835-T	0.2908	3E-7		2.047	[1.546-2.709]	Illumina [274400]	N
686	chr19	13365856	13365857	rs16033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.13	IER2	rs16033-?	NR	7E-6	(PC 34:2)	1.7031213	[0.96-2.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
687	chr19	13374912	13374913	rs4926244	25706626	Aung T	2015-02-23	Nat Genet	A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.	Exfoliation syndrome	1,484 Japanese ancestry cases, 1,188 Japanese ancestry controls	1,530 East Asian ancestry cases, 6,230 East Asian ancestry controls, 1,064 Southern Indian ancestry cases, 3,536 Southern Indian ancestry controls, 140 Hispanic cases, 233 Hispanic controls, 347 Middle Eastern ancestry cases, 1,108 Middle Eastern ancestry controls, 3,588 European ancestry cases, 9,012 European ancestry controls, 102 South African Black cases, 379 South African Black controls, 50 Uighur cases, 49 Uighur controls, 80 cases, 180 controls	19p13.13	CACNA1A	rs4926244-G	0.27	7E-6	(Asian)	1.14	[NR]	Illumina [581023]	N
687	chr19	13374912	13374913	rs4926244	25706626	Aung T	2015-02-23	Nat Genet	A common variant mapping to CACNA1A is associated with susceptibility to exfoliation syndrome.	Exfoliation syndrome	1,484 Japanese ancestry cases, 1,188 Japanese ancestry controls	1,530 East Asian ancestry cases, 6,230 East Asian ancestry controls, 1,064 Southern Indian ancestry cases, 3,536 Southern Indian ancestry controls, 140 Hispanic cases, 233 Hispanic controls, 347 Middle Eastern ancestry cases, 1,108 Middle Eastern ancestry controls, 3,588 European ancestry cases, 9,012 European ancestry controls, 102 South African Black cases, 379 South African Black controls, 50 Uighur cases, 49 Uighur controls, 80 cases, 180 controls	19p13.13	CACNA1A	rs4926244-G	0.16	3E-11		1.16	[NR]	Illumina [581023]	N
687	chr19	13384130	13384131	rs4926252	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.13	IER2	rs4926252-?	NR	1E-6	(SM 22:1)	0.167247	[0.1-0.235] unit increase	Affymetrix [at least 2500000] (imputed)	N
687	chr19	13432939	13432940	rs56052703	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	19p13.13	CACNA1A	rs56052703-?	0.66	3E-6		1.67	[1.33-2.08]	Illumina [~ 10500000] (imputed)	N
688	chr19	13616692	13616693	rs16003	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	19p13.13	NR	rs16003-T	0.507738889633733	3E-8		0.007271017	[0.0047-0.0098] unit increase	NR [NR]	N
688	chr19	13616692	13616693	rs16003	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	19p13.13	NR	rs16003-T	0.507738889633733	3E-8		0.006042832	[0.0039-0.0082] unit increase	NR [NR]	N
688	chr19	13620856	13620857	rs187606701	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	19p13.13	NR	rs187606701-A	0.157	7E-6	(Females)	0.368433	[0.21-0.53] unit increase	Illumina [~ 6600000] (imputed)	N
688	chr19	13624488	13624489	rs189753894	34151794	Kang S	2021-06-18	J Alzheimers Dis	Potential Novel Genes for Late-Onset Alzheimer's Disease in East-Asian Descent Identified by APOE-Stratified Genome-Wide Association Study.	Late-onset Alzheimer's disease in APOEe4 non-carriers	621 Korean ancestry cases, 976 Korean ancestry controls	435 Japanese ancestry cases, 815 Japanese ancestry controls	19p13.13		rs189753894-?	NR	2E-8		1.787		NR [NR] (imputed)	N
690	chr19	13802759	13802760	rs16979306	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19p13.13	NR	rs16979306-G	0.4192	7E-6		0.0411	[0.023-0.059] unit increase	Illumina [up to 1980188] (imputed)	N
690	chr19	13803169	13803170	rs7258177	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19p13.13	NR	rs7258177-G	0.42	8E-6		0.0409	[0.023-0.059] unit increase	Illumina [up to 1980188] (imputed)	N
691	chr19	13918140	13918141	rs58272424	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.12		rs58272424-T	0.744	1E-14				Affymetrix [10369434] (imputed)	N
691	chr19	13934295	13934296	rs76549352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.12		rs76549352-G	0.02	7E-29		11.15	z score increase	Affymetrix [9061022] (imputed)	N
691	chr19	13934295	13934296	rs76549352	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.12		rs76549352-G	0.02	4E-22		9.68	z score increase	Affymetrix [9061022] (imputed)	N
691	chr19	13934295	13934296	rs76549352	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.12	NR	rs76549352-G	0.0384	1E-17				NR [9056863] (imputed)	N
691	chr19	13934295	13934296	rs76549352	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	19p13.12		rs76549352-?	NR	4E-11				NR [9705931] (imputed)	N
691	chr19	13934295	13934296	rs76549352	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	19p13.12	VRK2, FANCL	rs76549352-?		5E-8				NR [7428630] (imputed)	N
691	chr19	13934295	13934296	rs76549352	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	19p13.12	SEMA6A	rs76549352-?		2E-8				NR [7428630] (imputed)	N
691	chr19	13934295	13934296	rs76549352	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19p13.12	MRI1, C19orf53, AC008686.1, ZSWIM4	rs76549352-?		5E-8				NR [7428630] (imputed)	N
691	chr19	13941021	13941022	rs56177954	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.12		rs56177954-C	0.02	1E-13		7.41	z score increase	Affymetrix [9061022] (imputed)	N
691	chr19	13941021	13941022	rs56177954	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.12	NR	rs56177954-C	0.0387	1E-14				NR [9056863] (imputed)	N
691	chr19	13942586	13942587	rs12610873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.12		rs12610873-A	NR	2E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
691	chr19	13944477	13944478	rs2594716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.12	NR	rs2594716-T	0.339385	1E-73		0.036743	[0.033-0.041] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
691	chr19	13947291	13947292	rs895819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.12		rs895819-T	0.662	3E-27				Affymetrix [10369434] (imputed)	N
691	chr19	13947291	13947292	rs895819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	MIR27A	rs895819-C	0.337325	3E-55		0.03679504	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
691	chr19	13947291	13947292	rs895819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.12	NR	rs895819-C	0.335771	7E-26		0.020942	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
691	chr19	13948311	13948312	rs10422126	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.12		rs10422126-A	NR	4E-41		0.0298	[0.025-0.034] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
691	chr19	13948311	13948312	rs10422126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19p13.12	MIR23A, MIR27A, MIR24-2	rs10422126-A	0.3355	4E-9		0.02255107	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
691	chr19	13948311	13948312	rs10422126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.12	MIR23A, MIR27A, MIR24-2	rs10422126-A	0.3355	6E-23		0.03792967	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
691	chr19	13948396	13948397	rs8101375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs8101375-G	0.350708	3E-27				Affymetrix, Illumina [24649327] (imputed)	N
691	chr19	13948396	13948397	rs8101375	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs8101375-G	0.348511	3E-76				Affymetrix, Illumina [23472807] (imputed)	N
691	chr19	13948396	13948397	rs8101375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.12		rs8101375-?	NR	4E-17				NR [~ 8900000] (imputed)	N
691	chr19	13948661	13948662	rs36116239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.12	MIR23A, MIR24-2, MIR27A	rs36116239-T	0.335439	9E-17		0.019575518	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
691	chr19	13949750	13949751	rs7248169	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.12		rs7248169-C	0.774	3E-17				Affymetrix [10369434] (imputed)	N
691	chr19	13949750	13949751	rs7248169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.12	MIR23A, MIR24-2, MIR27A	rs7248169-T	0.224903	5E-23		0.026382854	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
691	chr19	13949750	13949751	rs7248169	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.12	MIR23A, MIR24-2, MIR27A	rs7248169-T	0.224905	2E-23		0.026593978	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
691	chr19	13950205	13950206	rs62122064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.12		rs62122064-?	NR	5E-8				NR [~ 8900000] (imputed)	N
691	chr19	13950320	13950321	rs7255672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.12	MIR23A, MIR24-2, MIR27A	rs7255672-C	0.305924	3E-16		0.019907815	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
691	chr19	13950320	13950321	rs7255672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs7255672-C	0.328747	1E-22				Affymetrix, Illumina [23467995] (imputed)	N
691	chr19	13950320	13950321	rs7255672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.12	NR	rs7255672-C	0.311037	3E-22		0.020256	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
691	chr19	13950320	13950321	rs7255672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19p13.12		rs7255672-?	NR	6E-11				NR [~ 8900000] (imputed)	N
691	chr19	13954570	13954571	rs2594714	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	19p13.12		rs2594714-A	NR	4E-10		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
691	chr19	13954570	13954571	rs2594714	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.12	intergenic	rs2594714-G	0.77	1E-8	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
691	chr19	13955160	13955161	rs12162265	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19p13.12	NANOS3	rs12162265-A	0.2384	5E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
691	chr19	13956524	13956525	rs4635447	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	19p13.12	Intergenic	rs4635447-A	0.7594	2E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
691	chr19	13956662	13956663	rs4271693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.12	Intergenic	rs4271693-T	0.7467	6E-11	(MTAG)	0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
691	chr19	13993456	13993457	rs2242130	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	19p13.12	C19orf57	rs2242130-A	0.26	2E-6		5.2	z score increase	Illumina [6380737] (imputed)	N
691	chr19	13993763	13993764	rs77270337	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19p13.12	C19orf57	rs77270337-A	0.324	9E-11		0.05641		Illumina [243345]	N
692	chr19	14048713	14048714	rs3745467	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	19p13.12		rs3745467-?	NR	2E-7		51.2949	[49.81-52.78]	NR [673172]	N
692	chr19	14068709	14068710	rs11667546	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.12	IL27RA	rs11667546-C	0.80375	9E-39	(IL27RA, 5132_71_3)	0.40969053	[0.35-0.47] unit increase	Illumina [> 1000000] (imputed)	N
692	chr19	14139920	14139921	rs12327666	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.12	RLN3	rs12327666-A	0.031	9E-6	(Diet fat )	0.03	[NR] %energy increase	Illumina [899892]	N
692	chr19	14143150	14143151	rs2306191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.12		rs2306191-C	NR	2E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
692	chr19	14143150	14143151	rs2306191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs2306191-C	0.120986	9E-12				Affymetrix, Illumina [24588908] (imputed)	N
692	chr19	14149861	14149862	rs35018855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.12		rs35018855-?	NR	2E-11				NR [~ 8900000] (imputed)	N
692	chr19	14151808	14151809	rs12974412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	19p13.12		rs12974412-A	0.220051	2E-8		0.0279079	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
692	chr19	14151808	14151809	rs12974412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	19p13.12		rs12974412-A	0.220054	4E-9		0.0289007	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
692	chr19	14153292	14153293	rs35026308	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL27RA	5,361 Icelandic ancestry individuals	NA	19p13.12		rs35026308-C	0.1606	3E-199		0.711328	[0.67-0.76] unit decrease	Illumina [7506463] (imputed)	N
692	chr19	14153292	14153293	rs35026308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.12	IL27RA	rs35026308-C	0.176532	1E-14		0.022352537	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
692	chr19	14153292	14153293	rs35026308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.12	IL27RA	rs35026308-C	0.176539	3E-12		0.02021152	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
692	chr19	14153292	14153293	rs35026308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	IL27RA	rs35026308-C	0.176544	2E-13		0.021305865	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
692	chr19	14153292	14153293	rs35026308	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	IL27RA	rs35026308-C	0.176	4E-239	(Interleukin-27 receptor subunit alpha, IL27RA.5132.71.3)	0.95	[0.89-1.01] unit decrease	Affymetrix [10572788] (imputed)	N
692	chr19	14153292	14153293	rs35026308	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19p13.12	NR	rs35026308-?	NR	3E-15	(Interleukin-27 receptor subunit alpha)			Illumina [514227]	N
693	chr19	14172895	14172896	rs7252372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19p13.12		rs7252372-C	NR	2E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
693	chr19	14172895	14172896	rs7252372	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19p13.12	NR	rs7252372-C	0.4429	9E-9		0.001276	[0.00082-0.00173] unit increase	Affymetrix [NR] (imputed)	N
693	chr19	14172895	14172896	rs7252372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.12	NR	rs7252372-G	0.556472	8E-27		0.00868713	[0.007-0.0104] unit increase	Affymetrix [16582909] (imputed)	N
693	chr19	14172895	14172896	rs7252372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.12	NR	rs7252372-G	0.55697	2E-9		0.00705115	[0.0046-0.0095] unit increase	Affymetrix [16585854] (imputed)	N
693	chr19	14172895	14172896	rs7252372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.12	NR	rs7252372-G	0.556472	2E-22		0.00871256	[0.0068-0.0106] unit increase	Affymetrix [16582965] (imputed)	N
693	chr19	14172895	14172896	rs7252372	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.12	NR	rs7252372-G	0.55697	1E-6		0.00659828	[0.0037-0.0094] unit increase	Affymetrix [16585866] (imputed)	N
693	chr19	14172950	14172951	rs10421262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.12		rs10421262-G	NR	2E-16		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
693	chr19	14172950	14172951	rs10421262	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.12	PALM3	rs10421262-T	0.576785	1E-16		0.00436538	[0.0033-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
693	chr19	14172950	14172951	rs10421262	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.12	NR	rs10421262-G	NR	2E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
693	chr19	14172950	14172951	rs10421262	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.12	NR	rs10421262-G	NR	3E-11		0.0164	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
693	chr19	14172950	14172951	rs10421262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19p13.12	NR	rs10421262-T	0.575827	2E-12		0.02094	[0.015-0.027] unit increase	Affymetrix [16577313] (imputed)	N
693	chr19	14172950	14172951	rs10421262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.12	NR	rs10421262-T	0.575879	9E-24		0.0106829	[0.0084-0.013] unit increase	Affymetrix [16582621] (imputed)	N
693	chr19	14172950	14172951	rs10421262	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.12	NR	rs10421262-T	0.575879	4E-22		0.0112223	[0.0087-0.0137] unit increase	Affymetrix [16582614] (imputed)	N
693	chr19	14174534	14174535	rs73508199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.12	NR	rs73508199-C	0.379084	1E-13		0.014955	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
693	chr19	14179875	14179876	rs10854127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.12	hsa-mir-1199, EEF1DP1	rs10854127-C	0.354843	6E-12		0.016163519	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
693	chr19	14180998	14180999	rs111271889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.12		rs111271889-G	NR	3E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
693	chr19	14180998	14180999	rs111271889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.12	hsa-mir-1199, EEF1DP1	rs111271889-G	0.380519	4E-12		0.015765775	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
693	chr19	14180998	14180999	rs111271889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.12	hsa-mir-1199, EEF1DP1	rs111271889-G	0.380527	2E-11		0.015425184	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
693	chr19	14180998	14180999	rs111271889	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs111271889-G	0.383029	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
693	chr19	14180998	14180999	rs111271889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.12		rs111271889-?	NR	2E-11				NR [~ 8900000] (imputed)	N
693	chr19	14208781	14208782	rs34415768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.12		rs34415768-?	NR	3E-8				NR [~ 8900000] (imputed)	N
693	chr19	14241152	14241153	rs8112885	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	19p13.12	NR	rs8112885-?	NR	4E-7			[NR]	Illumina [5432814] (imputed)	N
693	chr19	14264394	14264395	rs34163270	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	19p13.12	NR	rs34163270-A	NR	5E-6	(EA)	0.002089	NR unit decrease	Illumina [3262988] (imputed)	N
694	chr19	14293621	14293622	rs557990244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.12		rs557990244-T	NR	5E-9		0.064	[0.042-0.086] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
694	chr19	14307038	14307039	rs113402941	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		ADGRL1	rs113402941-?	NR	7E-6	(male)	0.396651	[NR] unit decrease	Affymetrix [NR] (imputed)	N
694	chr19	14307038	14307039	rs113402941	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		ADGRL1	rs113402941-?	NR	7E-6		0.34	[NR] unit decrease	Affymetrix [NR] (imputed)	N
694	chr19	14351573	14351574	rs4528684	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	19p13.12	LPHN1	rs4528684-T	0.094	1E-6	(EA)	1.42	[0.99-2.03]	Affymetrix [up to 2366858] (imputed)	N
695	chr19	14436461	14436462	rs753274	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	19p13.12	NR	rs753274-C		3E-6		0.1736	[0.1-0.25] SD units increase	NR [10700000] (imputed)	N
695	chr19	14445137	14445138	rs11669181	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	19p13.12	BC011648	rs11669181-?	NR	6E-6		1.9649725	[1.47-2.63]	Illumina [at least 4756722] (imputed)	N
695	chr19	14487346	14487347	rs144790747	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	19p13.12	NR	rs144790747-?	NR	5E-7		0.02058	[0.013-0.029] unit decrease	Affymetrix [9658292] (imputed)	N
695	chr19	14492068	14492068	rs111896493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.12	CD97	rs111896493-CTGAG	0.434336	4E-15		0.01972074	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14492068	14492068	rs111896493	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.12	CD97	rs111896493-CTGAG	0.4358	4E-9		0.02341667	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
695	chr19	14492218	14492219	rs28366013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.12	CD97	rs28366013-A	0.095392	6E-13		0.029153153	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14492218	14492219	rs28366013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.12	CD97	rs28366013-A	0.095391	5E-16		0.033168178	[0.025-0.041] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14492218	14492219	rs28366013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs28366013-C	0.902793	1E-25				Affymetrix, Illumina [17210439] (imputed)	N
695	chr19	14492218	14492219	rs28366013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.12	NR	rs28366013-C	0.903042	5E-29		0.038934	[0.032-0.046] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
695	chr19	14499476	14499477	rs8105300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.12		rs8105300-?	NR	5E-9				NR [~ 8900000] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.12	CD97	rs150665764-C	0.017019	7E-17		0.07143216	[0.055-0.088] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.12	CD97	rs150665764-C	0.016997	1E-11		0.058255393	[0.041-0.075] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	CD97	rs150665764-C	0.017006	1E-18		0.07543787	[0.059-0.092] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs150665764-C	0.0184773	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.12	NR	rs150665764-C	0.017169	5E-19		0.070277	[0.055-0.086] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.12	NR	rs150665764-C	0.017221	5E-12		0.054207	[0.039-0.07] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
695	chr19	14499613	14499614	rs150665764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.12	NR	rs150665764-C	0.017134	2E-11		0.052236	[0.037-0.067] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
695	chr19	14499615	14499616	rs139113505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.12	CD97	rs139113505-T	0.017437	4E-16		0.06976689	[0.053-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
695	chr19	14501543	14501544	rs7260110	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.12	ADGRE5	rs7260110-G	0.3599398	5E-11	(EA, EGF-like module-containing mucin-like hormone receptor-like 2)	0.2969	[0.21-0.38] unit increase	Affymetrix [509946]	N
695	chr19	14507632	14507633	rs67023356	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADGRE2	5,368 Icelandic ancestry individuals	NA	19p13.12		rs67023356-G	0.2704	1E-59		0.335985	[0.3-0.38] unit increase	Illumina [7506463] (imputed)	N
695	chr19	14529081	14529082	rs117111916	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.12		rs117111916-C	0.945	7E-11		0.16	[-0.2--0.11] % decrease	Affymetrix [NR] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.055682	2E-11		0.03285575	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.055688	2E-11		0.032967452	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.0556140000000001	2E-20		0.0471816	[0.038-0.056] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.055625	5E-12		0.033258602	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.055701	5E-13		0.035293907	[0.026-0.045] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.05568	3E-15		0.03843288	[0.029-0.048] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.12	DDX39A	rs117111916-T	0.055682	5E-16		0.039434638	[0.03-0.049] unit increase	Affymetrix [93095623] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs117111916-T	0.0540102	5E-26				Affymetrix, Illumina [24246363] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.12	NR	rs117111916-T	0.055657	2E-28		0.046479	[0.038-0.055] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs117111916-T	0.0543	2E-14				Affymetrix, Illumina [20825802] (imputed)	N
695	chr19	14529081	14529082	rs117111916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.12	NR	rs117111916-T	0.055695	9E-16		0.034193	[0.026-0.043] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
695	chr19	14529081	14529082	rs117111916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.12		rs117111916-?	NR	3E-9				NR [~ 8900000] (imputed)	N
696	chr19	14553264	14553265	rs60984983	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	19p13.12		rs60984983-C	0.214067036	2E-12		1.1764237	[1.124378551-1.230877914]	Illumina [8919992] (imputed)	N
696	chr19	14571965	14571966	rs74956940	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	19p13.12		rs74956940-G	NR	6E-7		3.58	[2.17-5.92]	Illumina [10838245] (imputed)	N
696	chr19	14571965	14571966	rs74956940	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	19p13.12	PKN1	rs74956940-G	0.237	5E-15		1.1363636	[NR]	Illumina [6603247] (imputed)	N
696	chr19	14574896	14574897	rs34309238	30206226	Chang J	2018-09-11	Nat Commun	Exome-wide analysis identifies three low-frequency missense variants associated with pancreatic cancer risk in Chinese populations.	Pancreatic cancer	943 Chinese ancestry cases, 3,908 Chinese ancestry controls	2,142 Chinese ancestry cases, 4,697 Chinese ancestry controls	19p13.12	PKN1	rs34309238-A	0.018	5E-10		1.77	[1.48-2.12]	Illumina [174391]	N
696	chr19	14578353	14578354	rs34422078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	19p13.12		rs34422078-G	0.2405371	1E-15		0.1341578	[0.1-0.17] unit increase	Illumina [13429980] (imputed)	N
696	chr19	14588236	14588237	rs3760702	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	19p13.12	GIPC1	rs3760702-A	0.33	2E-9		1.09	[1.07-1.13]	Affymetrix, Illumina [~ 5000000] (imputed)	N
696	chr19	14588475	14588476	rs2241358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	19p13.12		rs2241358-G	NR	1E-17		0.1108	[0.086-0.136] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
696	chr19	14588475	14588476	rs2241358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19p13.12	NR	rs2241358-G	NR	1E-11		0.0173	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
696	chr19	14590918	14590919	rs2241357	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	19p13.12		rs2241357-A	NR	4E-7		4.18	[2.41-7.24]	Illumina [10838245] (imputed)	N
696	chr19	14606226	14606227	rs35076591	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GIPC1	rs35076591-?	NR	2E-13	(male)	2.17249	[NR] unit decrease	Affymetrix [NR] (imputed)	N
696	chr19	14606226	14606227	rs35076591	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GIPC1	rs35076591-?	NR	2E-12		1.44176	[NR] unit decrease	Affymetrix [NR] (imputed)	N
696	chr19	14617293	14617294	rs11672104	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19p13.12	DNAJB1	rs11672104-T	0.6	7E-11		0.0079	[0.0055-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
696	chr19	14617819	14617820	rs112878517	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	19p13.12	DNAJB1	rs112878517-T	0.4022	4E-12		0.013751207	[0.0099-0.0176] unit decrease	Illumina [9339358] (imputed)	N
696	chr19	14630747	14630748	rs76497942	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	19p13.12	NR	rs76497942-?	NR	7E-6		9.304	[2.13-16.48] unit increase	Illumina [at least 560000] (imputed)	N
696	chr19	14660842	14660843	rs116555863	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.12	NR	rs116555863-T	0.01568	5E-9	(ORM1)	0.7718	NR unit increase	Illumina [1671387] (imputed)	N
696	chr19	14672546	14672547	rs116073224	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TECR	rs116073224-?	NR	4E-11		1.95025	[NR] unit decrease	Affymetrix [NR] (imputed)	N
696	chr19	14672696	14672697	rs12461318	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	19p13.12	NR	rs12461318-G	0.4361	2E-6		0.6809	[0.38-0.98] unit increase	Illumina [at least 567677] (imputed)	N
697	chr19	14682265	14682266	rs115349611	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NDUFB7	rs115349611-?	NR	7E-11		1.92066	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr19	14702266	14702266	rs572708677	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CLEC17A	rs572708677-?	NR	1E-10		1.79102	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr19	14713492	14713493	rs7254215	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	19p13.12	NR	rs7254215-A		7E-6	(Modelling analysis)	1.09	[1.05-1.13]	NR [1252901] (imputed)	N
697	chr19	14719857	14719858	rs145155710	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		19p13.12	CLEC17A	rs145155710-T	0.0252404	5E-6		1.17628	[0.68-1.67] unit decrease	Illumina [640625] (imputed)	N
697	chr19	14753988	14753989	rs73506161	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	19p13.12		rs73506161-C	NR	6E-6	(GLM)	1.3697	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
697	chr19	14753988	14753989	rs73506161	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	19p13.12		rs73506161-C	NR	5E-6	(GLM)	4.1977	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
697	chr19	14758611	14758612	rs112687359	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	19p13.12	CLEC17A, EMR3, ZNF333	rs112687359-?	NR	5E-6		0.068	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
697	chr19	14792856	14792857	rs117569858	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.12	ADGRE2	rs117569858-G	0.98421875	1E-8	(ADGRE2, 4546_27_3)	0.5505024	[0.36-0.74] unit increase	Illumina [> 1000000] (imputed)	N
697	chr19	14794732	14794733	rs113128779	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ADGRE3	rs113128779-?	NR	9E-10	(male)	4.6518	[NR] unit decrease	Affymetrix [NR] (imputed)	N
697	chr19	14800921	14800922	rs4808304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.12	ZNF333	rs4808304-C	0.601117	2E-19		0.020754747	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr19	14836558	14836559	rs11670658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.12		rs11670658-?	NR	2E-8				NR [~ 8900000] (imputed)	N
698	chr19	14854337	14854338	rs117617387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p13.12	NR	rs117617387-T	0.01394	2E-8	(GPNMB)	0.04461	NR unit increase	Illumina [1671387] (imputed)	N
698	chr19	14876162	14876163	rs112610420	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	19p13.12	EMR2	rs112610420-?	NR	1E-6				Illumina [83898]	N
698	chr19	14878195	14878196	rs538015403	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	19p13.12	EMR3	rs538015403-A	0.02	3E-6		0.41	[0.23-0.59] unit decrease	Illumina [14638245] (imputed)	N
698	chr19	14885799	14885800	rs57712673	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Plasma androstenedione levels in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	19p13.12	EMR2, ADGRE2	rs57712673-A	0.349	1E-7		0.36	[0.23-0.49] pg/mL increase	Illumina [8203257] (imputed)	N
698	chr19	14927400	14927401	rs28409744	32366958	Woodbury-Smith MR	2020-05-04	Sci Rep	Genome-wide association study of emotional empathy in children.	Emotional recognition	4,780 European ancestry children	NA	19p13.12	NR	rs28409744-A	0.45	6E-7		301.14	[182.78-419.5] unit increase	Illumina [27449291] (imputed)	N
699	chr19	14951510	14951511	rs3829681	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.12	OR7A10	rs3829681-G	0.172249210096015	7E-7	(G_unclassified_F_Ruminococcaceae_RNT)	0.146374	[0.089-0.204] unit increase	Illumina [7711310] (imputed)	N
699	chr19	15001096	15001097	rs11085919	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	19p13.12	OR7A17	rs11085919-?	NR	9E-7	(AA)			Illumina [up to 666531]	N
699	chr19	15012233	15012234	rs4594370	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.12	NR	rs4594370-G	0.0309	7E-6	(EA)	0.1022	[0.058-0.147] unit decrease	Illumina [~ 11800000] (imputed)	N
699	chr19	15026062	15026063	rs1468308	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	19p13.12	OR7A17, OR7C2	rs1468308-C	0.422	5E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [12148595] (imputed)	N
700	chr19	15081335	15081336	rs113464626	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	19p13.12	SLC1A6	rs113464626-A	0.016	6E-6		3.13	[1.91-5.13]	Illumina [7959153] (imputed)	N
700	chr19	15135740	15135741	rs6512003	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.12	CASP14	rs6512003-?	NR	6E-6	(PC 38:5)	0.16773301	[0.095-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
700	chr19	15157669	15157670	rs118174093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Bronchitis	4,483 European ancestry cases, 474,818 European ancestry controls, 1,465 East Asian ancestry cases, 170,000 East Asian ancestry controls	NA	19p13.12		rs118174093-A	NR	1E-8		0.2055	[0.13-0.28] unit increase	Affymetrix, Illumina [25844193] (imputed)	N
700	chr19	15200125	15200126	rs73008827	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	19p13.12		rs73008827-C	0.983977	5E-6		0.0477318	[0.027-0.068] unit increase	Illumina [13900000] (imputed)	N
701	chr19	15224224	15224225	rs8109071	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	19p13.12	SYDE1, ILVBL	rs8109071-?	NR	8E-7	(EA)	0.0526	[0.032-0.073] unit decrease	Illumina [7176022] (imputed)	N
701	chr19	15233324	15233325	rs148690419	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	19p13.12	NR	rs148690419-C	0.9889853	5E-7		1.1467891	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
701	chr19	15266862	15266863	rs7249331	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.12	NOTCH3	rs7249331-C	0.7008	6E-14		0.2094	[0.15-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
701	chr19	15275606	15275607	rs58826169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19p13.12		rs58826169-G	NR	6E-17		0.0329	[0.025-0.041] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
701	chr19	15278807	15278808	rs10418305	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.12	NOTCH3	rs10418305-C		9E-7	(EA)	0.321	unit decrease	Affymetrix [at least 2696785] (imputed)	N
701	chr19	15278807	15278808	rs10418305	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19p13.12	NOTCH3	rs10418305-C		6E-11		0.368	unit decrease	Affymetrix [at least 2696785] (imputed)	N
701	chr19	15278807	15278808	rs10418305	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.12	NOTCH3	rs10418305-C		4E-16		0.33	unit decrease	Affymetrix [at least 2696785] (imputed)	N
701	chr19	15280723	15280724	rs11666629	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.12	ILVBL	rs11666629-?	NR	9E-6	(inositol)	3.527434	[1.97-5.08] unit increase	Affymetrix [at least 2500000] (imputed)	N
701	chr19	15285678	15285679	rs7408868	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	19p13.12	chr19mb15	rs7408868-C	0.899996096	3E-6		0.2485	[0.14-0.35] unit increase	Affymetrix [~ 9800000] (imputed)	N
701	chr19	15301856	15301857	rs11881343	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Toxoplasma gondii sag1 antibody levels	3,919 White British ancestry individuals	NA	19p13.12	NOTCH3	rs11881343-A	0.982	4E-8		0.47	[0.30-0.64] unit decrease	NR [25472218] (imputed)	N
702	chr19	15336392	15336396	rs5827281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.12	AC004257.1	rs5827281-C	0.220982	3E-13		0.02046186	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15336392	15336396	rs5827281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.12	AC004257.1	rs5827281-C	0.2235	9E-12		0.03098894	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
702	chr19	15343364	15343366	rs145364311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.12	EPHX3	rs145364311-A	0.151004	4E-15		0.024993852	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15343364	15343366	rs145364311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.12	EPHX3	rs145364311-A	0.150918	5E-22		0.0308641	[0.025-0.037] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15343364	15343366	rs145364311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.12	EPHX3	rs145364311-A	0.150913	6E-19		0.027981464	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15343364	15343366	rs145364311	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.12	EPHX3	rs145364311-A	0.1537	5E-10		0.03132209	[0.021-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
702	chr19	15352371	15352372	rs4808272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.12	BRD4	rs4808272-A	0.530561	7E-13		0.0160737	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15353000	15353002	rs200124455	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	19p13.12	NR	rs200124455-TAC		6E-6		0.3978	[0.23-0.57] SD units increase	NR [10700000] (imputed)	N
702	chr19	15359152	15359153	rs11673209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.12	BRD4	rs11673209-A	0.173957	5E-12		0.020571185	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15359258	15359259	rs3787030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.12		rs3787030-A	NR	2E-8		0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
702	chr19	15359258	15359259	rs3787030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.12	BRD4	rs3787030-A	0.531235	3E-13		0.016468292	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15363051	15363052	rs11880801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.12	NR	rs11880801-T	0.174872	5E-17		0.020616	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
702	chr19	15363476	15363477	rs8104223	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.12	BRD4	rs8104223-G	0.7067	5E-9		0.2141	[0.14-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
702	chr19	15388216	15388217	rs139193462	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	19p13.12	NR	rs139193462-G	0.99025887	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
702	chr19	15411383	15411384	rs10411512	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs10411512-C	0.153703	9E-15				Affymetrix, Illumina [24588908] (imputed)	N
702	chr19	15413670	15413671	rs76589360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.12	NR	rs76589360-T	0.887238	1E-14		0.023487	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
702	chr19	15425008	15425009	rs62113852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.12	BRD4	rs62113852-G	0.132621	1E-13		0.024390323	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
702	chr19	15425008	15425009	rs62113852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs62113852-C	0.871253	6E-12				Affymetrix, Illumina [22063850] (imputed)	N
702	chr19	15432800	15432801	rs78081685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs78081685-T	0.0639306	4E-18				Affymetrix, Illumina [24332387] (imputed)	N
702	chr19	15432800	15432801	rs78081685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.12	NR	rs78081685-T	0.072369	6E-20		0.033742	[0.027-0.041] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
702	chr19	15437227	15437228	rs6512023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19p13.12		rs6512023-?	NR	2E-10				NR [~ 8900000] (imputed)	N
702	chr19	15441322	15441323	rs62113853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.12		rs62113853-?	NR	2E-15				NR [~ 8900000] (imputed)	N
702	chr19	15443700	15443701	rs57875194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.12		rs57875194-A	NR	4E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
702	chr19	15447897	15447898	rs10405035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.12		rs10405035-?	NR	3E-11				NR [~ 8900000] (imputed)	N
702	chr19	15448709	15448710	rs138715897	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.12	NR	rs138715897-?	NR	7E-7		0.0084227	[0.0051-0.0118] unit increase	Affymetrix [805426] (imputed)	N
702	chr19	15452851	15452852	rs66533425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.12	NR	rs66533425-A	0.170957	1E-30		0.029009	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
702	chr19	15452851	15452852	rs66533425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.12	NR	rs66533425-A	0.167142	2E-25		0.027383	[0.022-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
702	chr19	15452851	15452852	rs66533425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.12		rs66533425-?	NR	1E-16				NR [~ 8900000] (imputed)	N
702	chr19	15458048	15458049	rs73508476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs73508476-A	0.168654	2E-28				Affymetrix, Illumina [24246363] (imputed)	N
702	chr19	15458048	15458049	rs73508476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs73508476-A	0.166026	7E-23				Affymetrix, Illumina [20825802] (imputed)	N
703	chr19	15478334	15478335	rs143155169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.12		rs143155169-?	NR	4E-16				NR [~ 8900000] (imputed)	N
703	chr19	15490400	15490401	rs144075571	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	19p13.12	NR	rs144075571-G		4E-6		0.3831	[0.22-0.55] SD units increase	NR [10700000] (imputed)	N
703	chr19	15526499	15526500	rs146213062	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.12		rs146213062-G	NR	6E-15		0.0396	[0.03-0.05] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
703	chr19	15526499	15526500	rs146213062	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.12	AKAP8L	rs146213062-G	0.0449850000000001	3E-15		0.043284263	[0.033-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
703	chr19	15541563	15541563	rs35685453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.12	WIZ	rs35685453-GT	0.75491	1E-10		0.016727574	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
703	chr19	15560901	15560902	rs112163620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.12	WIZ	rs112163620-T	0.144072	3E-10		0.02303326	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
703	chr19	15561219	15561220	rs74323928	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	19p13.12		rs74323928-A	0.05045	4E-6		1.523	[1.273-1.823]	Affymetrix [7975321] (imputed)	N
703	chr19	15565645	15565646	rs56209154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	RASAL3	rs56209154-A	0.019105	3E-9		0.047470313	[0.032-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
703	chr19	15568122	15568123	rs142945276	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	19p13.12		rs142945276-?	NR	6E-12		0.0768773	[0.056-0.098] unit increase	NR [9800000] (imputed)	N
703	chr19	15568122	15568123	rs142945276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	RASAL3	rs142945276-A	0.00929999999999998	2E-9		0.06871543	[0.046-0.091] unit increase	Affymetrix [93095623] (imputed)	N
703	chr19	15568281	15568295	rs751462297	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	19p13.12		rs751462297-?	NR	8E-17		0.120826	[0.091-0.15] unit decrease	NR [9800000] (imputed)	N
703	chr19	15568281	15568295	rs751462297	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	19p13.12		rs751462297-?	NR	2E-11		0.0928871	[0.063-0.123] unit decrease	NR [9800000] (imputed)	N
703	chr19	15573990	15573991	rs140759799	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREML1	5,364 Icelandic ancestry individuals	NA	19p13.12		rs140759799-A	0.09512	6E-81		0.598768	[0.54-0.66] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15576816	15576817	rs919791	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPS6KB1	5,355 Icelandic ancestry individuals	NA	19p13.12		rs919791-A	0.2107	7E-87		0.421954	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15576816	15576817	rs919791	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGLYRP2	5,361 Icelandic ancestry individuals	NA	19p13.12		rs919791-A	0.2107	5E-11		0.151434	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
703	chr19	15576816	15576817	rs919791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	RASAL3	rs919791-A	0.214	6E-19	(Bombesin receptor-activated protein C6orf89, C6orf89.10885.36.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15576816	15576817	rs919791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	RASAL3	rs919791-A	0.214	2E-13	(Phosphoglycerate kinase 1, PGK1.5020.50.1)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15576816	15576817	rs919791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	RASAL3	rs919791-A	0.214	1E-27	(Carboxypeptidase A2, CPA2.9276.7.3)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15578007	15578008	rs55866012	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGLYRP2	5,361 Icelandic ancestry individuals	NA	19p13.12		rs55866012-G	0.1632	3E-76		0.458305	[0.41-0.51] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15578007	15578008	rs55866012	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.12	PGLYRP2	rs55866012-T	0.84203125	2E-47	(PGLYRP2, 5601_2_3)	0.4858948	[0.42-0.55] unit increase	Illumina [> 1000000] (imputed)	N
703	chr19	15580289	15580290	rs36020076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TREML1	5,364 Icelandic ancestry individuals	NA	19p13.12		rs36020076-A	0.2107	7E-106		0.482594	[0.44-0.53] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15580289	15580290	rs36020076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SENP7	5,362 Icelandic ancestry individuals	NA	19p13.12		rs36020076-A	0.2107	1E-21		0.207985	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15580289	15580290	rs36020076	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITGB6	5,366 Icelandic ancestry individuals	NA	19p13.12		rs36020076-A	0.2107	1E-106		0.492727	[0.45-0.54] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15580289	15580290	rs36020076	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs36020076-A	0.211	1E-84	(Submaxillary gland androgen-regulated protein 3A, SMR3A.7838.27.3)	0.57	[0.51-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15580657	15580658	rs2304200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGLYRP2	5,361 Icelandic ancestry individuals	NA	19p13.12		rs2304200-A	0.1012	4E-14		0.236001	[0.17-0.3] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15580657	15580658	rs2304200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MSR1	5,361 Icelandic ancestry individuals	NA	19p13.12		rs2304200-A	0.1012	4E-18		0.261434	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15582379	15582380	rs60292400	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs60292400-T	0.005	3E-27	(Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2, ASAP2.13518.5.3)	1.78	[1.47-2.09] unit increase	Affymetrix [10572788] (imputed)	N
703	chr19	15582484	15582485	rs12610560	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PACSIN1	5,357 Icelandic ancestry individuals	NA	19p13.12		rs12610560-C	0.3746	2E-173		0.501672	[0.47-0.54] unit decrease	Illumina [7506463] (imputed)	N
703	chr19	15582862	15582863	rs34440547	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs34440547-T	0.208	6E-76	(Protein LDOC1, LDOC1.8378.3.4)	0.54	[0.48-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15583561	15583562	rs4638719	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs4638719-G	0.373	3E-82	(Glycoprotein hormone alpha-2, GPHA2.6395.58.3)	0.46	[0.42-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15585888	15585889	rs8105422	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs8105422-G	0.373	1E-17	(Transmembrane protein 2, TMEM2.8992.1.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15586671	15586672	rs892145	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs892145-T	0.372	2E-55	(Guanylyl cyclase-activating protein 1, GUCA1A.10008.43.3)	0.39	[0.35-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15587344	15587345	rs3813135	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.12	PGLYRP2	rs3813135-C	0.379	2E-26	(Adrenomedullin, ADM.14115.34.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
703	chr19	15593824	15593825	rs116968049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	PGLYRP2	rs116968049-G	0.040924	5E-12		0.03831001	[0.027-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
704	chr19	15653668	15653669	rs569022307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.12	CYP4F22	rs569022307-C	0.00407599999999997	1E-14		0.1371214	[0.1-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
704	chr19	15653668	15653669	rs569022307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs569022307-T	0.996031	1E-17				Affymetrix, Illumina [23472807] (imputed)	N
704	chr19	15676462	15676463	rs58059008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19p13.12	NR	rs58059008-C	0.054	2E-7	(IFNalpha_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
704	chr19	15677709	15677710	rs1273516	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	19p13.12	intergenic	rs1273516-?	0.39	9E-7	(CSJC , EA, RF-)	4.26	[NR] unit decrease	Illumina [534053]	N
704	chr19	15724202	15724203	rs3764563	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	19p13.12	CYP4F8	rs3764563-?	NR	3E-7	(MCP1-TNF-a pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
705	chr19	15754726	15754727	rs549862015	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.12		rs549862015-T	0.02909	4E-8		0.4481	[0.29-0.61] unit increase	Illumina [18335935] (imputed)	N
705	chr19	15764070	15764071	rs2683043	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	19p13.12		rs2683043-G	0.1169	7E-6		1.622	[1.314-2.003]	Affymetrix [7975321] (imputed)	N
705	chr19	15776329	15776330	rs147509526	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	19p13.12	NR	rs147509526-C		7E-7		0.358	[0.22-0.5] SD units increase	NR [10700000] (imputed)	N
705	chr19	15798014	15798015	rs4808360	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.12	CYP4F12	rs4808360-T	0.491763	8E-10		0.0129081	[0.0088-0.017] unit decrease	Affymetrix [NR] (imputed)	N
705	chr19	15804749	15804750	rs12986015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.12		rs12986015-T	NR	2E-9		0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
705	chr19	15804749	15804750	rs12986015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19p13.12		rs12986015-T	NR	5E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
705	chr19	15807304	15807305	rs688755	34319593	Li N	2021-07-28	Int J Cancer	Genetic variants of CYP4F12 gene are associated with glioma susceptibility.	Glioma	485 Han Chinese ancestry cases, 485 Han Chinese ancestry controls	NA	19p13.12	CYP4F12	rs688755-?	NR	2E-8		3.55	(2.20-5.74)	Affymetrix [4635191] (imputed)	N
706	chr19	15924712	15924713	rs140253564	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	19p13.12	NR	rs140253564-C		7E-7		0.3367	[0.2-0.47] SD units decrease	NR [10700000] (imputed)	N
706	chr19	15964986	15964986	rs11384887	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19p13.12	NR	rs11384887-?	NR	3E-6		1.73	[1.57-1.91]	Illumina [539000] (imputed)	N
706	chr19	15975095	15975096	rs11086005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.12		rs11086005-T	NR	4E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
706	chr19	15975095	15975096	rs11086005	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19p13.12	OR10H1, CYP4F2	rs11086005-G	0.62	3E-8		5.56	z-score increase	Affymetrix [4314223] (imputed)	N
706	chr19	15978934	15978935	rs12611275	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19p13.12	CYP4F2	rs12611275-A	0.27	4E-20	(X - 24359)	0.362	[0.29-0.44] unit decrease	Illumina [7750367] (imputed)	N
706	chr19	15978934	15978935	rs12611275	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19p13.12	CYP4F2	rs12611275-A	0.27	3E-12	(gamma-CEHC glucuronide)	0.244	[0.18-0.31] unit decrease	Illumina [7750367] (imputed)	N
706	chr19	15978934	15978935	rs12611275	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19p13.12	CYP4F2	rs12611275-A	0.27	2E-18	(alpha-CEHC glucuronide)	0.397	[0.31-0.49] unit decrease	Illumina [7750367] (imputed)	N
706	chr19	15979743	15979744	rs77420750	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BAG4	5,368 Icelandic ancestry individuals	NA	19p13.12		rs77420750-A	0.2926	2E-14		0.162859	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
706	chr19	15979743	15979744	rs77420750	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.12	LINC01835	rs77420750-C	0.700186	7E-10		0.012484	[0.0085-0.0165] unit decrease	NR [13737936] (imputed)	N
706	chr19	15979743	15979744	rs77420750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.12		rs77420750-?	NR	4E-10				NR [~ 8900000] (imputed)	N
706	chr19	15981820	15981821	rs55744319	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	19p13.12	CYP4F2	rs55744319-A	0.27	6E-20	(alpha-CEHC glucuronide, alpha-CEHC glycine, alpha-CEHC sulfate, alpha-CEHC taurine, X-13689, X-24359)	0.009	[0.007-0.011] unit decrease	Illumina [7750367] (imputed)	N
706	chr19	15981820	15981821	rs55744319	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19p13.12	CYP4F2	rs55744319-A	0.27	2E-15	(alpha-CEHC sulfate)	0.422	[0.32-0.53] unit decrease	Illumina [7750367] (imputed)	N
706	chr19	15983425	15983426	rs62107765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.12		rs62107765-G	NR	2E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
706	chr19	15984401	15984402	rs79400241	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.12	UCA1, CYP4F2	rs79400241-C	0.751959	6E-26	(gamma-CEHC)	0.276	[0.23-0.33] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15984401	15984402	rs79400241	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.12	UCA1, CYP4F2	rs79400241-C	0.751959	1E-15	(gamma-CEHC glucuronide*)	0.176	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15984401	15984402	rs79400241	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	19p13.12	UCA1, CYP4F2	rs79400241-C	0.751959	6E-26	(gamma-CEHC)	0.276	[0.23-0.33] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15984401	15984402	rs79400241	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	19p13.12	UCA1, CYP4F2	rs79400241-C	0.751959	1E-15	(gamma-CEHC glucuronide*)	0.176	[0.13-0.22] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15986387	15986388	rs11086006	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19p13.12	CYP4F2	rs11086006-?	NR	6E-8		0.0014	[0.00081-0.00199] unit decrease	Affymetrix [21347608] (imputed)	N
706	chr19	15986387	15986388	rs11086006	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19p13.12	CYP4F2	rs11086006-?	NR	2E-8		0.0023	[0.0013-0.0033] unit decrease	Affymetrix [21347608] (imputed)	N
706	chr19	15990430	15990431	rs2108622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_25:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19p13.12		rs2108622-T	NR	1E-16		0.0802648	[0.061-0.099] unit increase	Affymetrix [87696910] (imputed)	N
706	chr19	15990430	15990431	rs2108622	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.12	CYP4F2	rs2108622-C	0.75191	6E-17	(octadecanedioate)	0.22	[0.17-0.27] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15990430	15990431	rs2108622	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	19p13.12	CYP4F2	rs2108622-C	0.75191	6E-17	(octadecanedioate)	0.22	[0.17-0.27] unit increase	Illumina [13039987] (imputed)	N
706	chr19	15990430	15990431	rs2108622	25411281	Dashti HS	2014-10-08	Am J Clin Nutr	Meta-analysis of genome-wide association studies for circulating phylloquinone concentrations.	Circulating phylloquinone levels	2,138 European ancestry individuals	NA	19p13.12	CYP4F2	rs2108622-T	0.3	3E-7	(Model 2)	0.16	[0.10-0.22] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
706	chr19	15990430	15990431	rs2108622	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	19p13.12	CYP4F2	rs2108622-T	NR	9E-24	(Glycerolphosphocholine)			Affymetrix [333722]	N
706	chr19	15990430	15990431	rs2108622	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	19p13.12	CYP4F2, LOC729645	rs2108622-T	0.19	2E-7	(alpha-TOH)	0.04	[0.020-0.060] mg/L increase	Illumina [549989]	N
706	chr19	15990430	15990431	rs2108622	21729881	Major JM	2011-07-05	Hum Mol Genet	Genome-wide association study identifies common variants associated with circulating vitamin E levels.	Vitamin E levels	2,402 European ancestry cases, 1612 European ancestry controls	475 European ancestry cases, 517 European ancestry controls, 1,416 cases, 1,359 controls	19p13.12	CYP4F2	rs2108622-T	0.21	1E-10		0.03	[0.01-0.05] unit increase	Illumina [NR]	N
706	chr19	15990430	15990431	rs2108622	20833655	Cha PC	2010-09-10	Hum Mol Genet	Genome-wide association study identifies genetic determinants of warfarin responsiveness for Japanese.	Warfarin maintenance dose	807 Japanese ancestry low dose individuals, 701 Japanese ancestry high dose individuals	444 Japanese ancestry individuals	19p13.12	CYP4F2	rs2108622-T	NR	3E-8				Illumina [485227]	N
706	chr19	15990430	15990431	rs2108622	19578179	Teichert M	2009-07-04	Hum Mol Genet	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	19p13.12	CYP4F2	rs2108622-?	NR	3E-10				Illumina [~ 550000]	N
706	chr19	15990430	15990431	rs2108622	19300499	Takeuchi F	2009-03-20	PLoS Genet	A genome-wide association study confirms VKORC1, CYP2C9, and CYP4F2 as principal genetic determinants of warfarin dose.	Warfarin maintenance dose	1,053 European ancestry individuals	588 European ancestry individuals	19p13.12	CYP4F2	rs2108622-?	0.24	3E-10		0.21	[0.14-0.27] mg/week increase	Illumina [325997]	N
707	chr19	16116430	16116431	rs142119409	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19p13.12	Intergenic	rs142119409-C	0.999	9E-7	(AA)	0.308	unit increase	Illumina [NR] (imputed)	N
708	chr19	16180329	16180330	rs200684240	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	19p13.12		rs200684240-?	NR	5E-6		0.6065821	[0.35-0.87] unit decrease	Illumina [9875426] (imputed)	N
708	chr19	16180329	16180330	rs200684240	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	19p13.12		rs200684240-?	NR	6E-6		0.6636186	[0.38-0.95] unit decrease	Illumina [9842460] (imputed)	N
708	chr19	16185558	16185559	rs8109288	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	19p13.12	NR	rs8109288-?	NR	1E-19		11.38798	[8.92-13.86] unit decrease	Illumina [30743395] (imputed)	N
708	chr19	16185558	16185559	rs8109288	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	19p13.12	TPM4	rs8109288-G	0.97	2E-8		13.83	[9.01-18.65] unit increase	Illumina [2232944] (imputed)	N
708	chr19	16185558	16185559	rs8109288	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	19p13.12	TPM4	rs8109288-G	0.097	5E-10		8.72	[5.98-11.46] 10^9 L decrease	Affymetrix, Illumina [~ 2200000] (imputed)	N
708	chr19	16185558	16185559	rs8109288	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Mean platelet volume	16,388 African American individuals	NA	19p13.12	TPM4	rs8109288-G	0.084	3E-9		0.26	[0.18-0.34] fL increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
708	chr19	16185558	16185559	rs8109288	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	19p13.12	TPM4	rs8109288-G	NR	3E-10		11.945	[8.24-15.65] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
708	chr19	16185558	16185559	rs8109288	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	19p13.12	TPM4	rs8109288-A	NR	1E-11		0.029	[0.021-0.037] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
708	chr19	16190862	16190863	rs16981095	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	19p13.12	TPM4	rs16981095-G	NR	1E-6		0.2109	[0.13-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr19	16194503	16194504	rs17708984	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.12		rs17708984-G	0.713	1E-13				Affymetrix [10369434] (imputed)	N
708	chr19	16194503	16194504	rs17708984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.12	TPM4	rs17708984-A	0.288375	8E-12		0.017629206	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16194503	16194504	rs17708984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.12	TPM4	rs17708984-A	0.2882	2E-14		0.03055629	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16194503	16194504	rs17708984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.12	TPM4	rs17708984-A	0.2879	6E-16		0.03277082	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16197420	16197421	rs2303149	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.12	TPM4	rs2303149-G	0.456391	7E-21		0.023678293	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16197420	16197421	rs2303149	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.12	TPM4	rs2303149-G	0.4596	6E-10		0.0235933	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16200377	16200378	rs11086023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.12	TPM4	rs11086023-T	0.2822	7E-13		0.018518526	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16203303	16203304	rs73517714	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	19p13.12		rs73517714-A	0.041185	3E-55		15.175737	[13.27-17.08] unit decrease	NR [NR]	N
708	chr19	16203303	16203304	rs73517714	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	19p13.12		rs73517714-A	0.9659	3E-16		0.2215	[0.17-0.27] unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr19	16203303	16203304	rs73517714	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	19p13.12		rs73517714-A	0.9195	2E-12		0.1555	[0.11-0.2] unit increase	Affymetrix, Illumina [NR] (imputed)	N
708	chr19	16203303	16203304	rs73517714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	19p13.12	NR	rs73517714-C	0.908086	3E-23		0.253391	[0.2-0.3] SD units decrease	Affymetrix, Illumina [36042313] (imputed)	N
708	chr19	16203303	16203304	rs73517714	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19p13.12		rs73517714-?	0.01675	3E-12		0.01258	unit increase	NR [6200000] (imputed)	N
708	chr19	16203303	16203304	rs73517714	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	19p13.12		rs73517714-?	0.01675	2E-9		0.02537	unit increase	NR [6200000] (imputed)	N
708	chr19	16203303	16203304	rs73517714	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19p13.12		rs73517714-?	0.01675	7E-7		0.026	unit increase	NR [6200000] (imputed)	N
708	chr19	16206011	16206012	rs57843631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.12		rs57843631-T	NR	1E-147		0.2255	[0.21-0.24] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
708	chr19	16206011	16206012	rs57843631	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.12		rs57843631-C	0.981	4E-25				Affymetrix [10369434] (imputed)	N
708	chr19	16206011	16206012	rs57843631	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.12		rs57843631-C	0.981	4E-94				Affymetrix [10369434] (imputed)	N
708	chr19	16206011	16206012	rs57843631	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	19p13.12		rs57843631-T	0.9762	1E-6		0.285	[0.17-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
708	chr19	16206011	16206012	rs57843631	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	19p13.12		rs57843631-T	0.9182	7E-7		0.1751	[0.11-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.12	TPM4	rs57843631-T	0.019021	1E-46		0.12265325	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.12	TPM4	rs57843631-T	0.019029	4E-139		0.21531555	[0.2-0.23] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.12	TPM4	rs57843631-T	0.019023	7E-134		0.21293756	[0.2-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.12	TPM4	rs57843631-T	0.019033	2E-177		0.2502388	[0.23-0.27] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs57843631-T	0.0218879	2E-252				Affymetrix, Illumina [24588908] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.12	NR	rs57843631-T	0.020093	1E-235		0.232866	[0.22-0.25] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	19p13.12	NR	rs57843631-C	0.913787	4E-20		0.202058	[0.16-0.25] SD units increase	Affymetrix, Illumina [36877391] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.12	NR	rs57843631-C	0.979134	2E-291				Affymetrix, Illumina [17210439] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.12	NR	rs57843631-C	0.980787	5E-268		0.25616	[0.24-0.27] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19p13.12		rs57843631-?	0.0166	1E-12		0.01293	unit increase	NR [6200000] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	19p13.12		rs57843631-?	0.0166	1E-8		0.02425	unit increase	NR [6200000] (imputed)	N
708	chr19	16206011	16206012	rs57843631	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19p13.12		rs57843631-?	0.0166	2E-6		0.02505	unit increase	NR [6200000] (imputed)	N
708	chr19	16211629	16211630	rs59508494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19p13.11	TPM4	rs59508494-G	0.0191	2E-58		0.2230131	[0.2-0.25] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16211629	16211630	rs59508494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.11	TPM4	rs59508494-G	0.0191	1E-67		0.2421656	[0.21-0.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16213697	16213697	rs143558304	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Mean platelet volume	up to 6,407 African ancestry individuals	NA	19p13.11		rs143558304-?	0.865	5E-10		0.33	[0.23-0.43] unit decrease	Affymetrix, Illumina [at least 20594556] (imputed)	N
708	chr19	16213697	16213697	rs143558304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.11	TPM4	rs143558304-TA	0.0188	7E-22		0.1365312	[0.11-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16213697	16213697	rs143558304	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.11	TPM4	rs143558304-TA	0.019	4E-61		0.2327818	[0.21-0.26] unit decrease	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16217452	16217453	rs2113036	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.11	RAB8A, CTD-2231E14.5	rs2113036-C	0.3438	1E-28		0.04338882	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16217483	16217484	rs2113038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	RAB8A, CTD-2231E14.5	rs2113038-C	0.341541	4E-10		0.016054273	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16217483	16217484	rs2113038	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.11	RAB8A, CTD-2231E14.5	rs2113038-C	0.341563	1E-25		0.027740946	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16222126	16222127	rs2233141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19p13.11		rs2233141-T	0.309356	1E-15		0.0317906	[0.024-0.04] unit increase	Illumina [13476299] (imputed)	N
708	chr19	16228700	16228701	rs7252188	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	19p13.11		rs7252188-A	0.39	7E-7				Illumina [6761961] (imputed)	N
708	chr19	16231946	16231947	rs112197909	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.11		rs112197909-A	0.811	3E-20				Affymetrix [10369434] (imputed)	N
708	chr19	16235307	16235308	rs10410723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.11		rs10410723-?	NR	3E-16				NR [~ 8900000] (imputed)	N
708	chr19	16236003	16236004	rs2241399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs2241399-G	0.171157	4E-32				Affymetrix, Illumina [24246363] (imputed)	N
708	chr19	16238605	16238606	rs73928741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs73928741-T	0.150237	5E-13				Affymetrix, Illumina [21126107] (imputed)	N
708	chr19	16239999	16240000	rs61630159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.11	NR	rs61630159-A	0.187873	2E-14		0.01965	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
708	chr19	16240126	16240127	rs55980421	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.11	NR	rs55980421-G	0.811766	3E-16		0.019659	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
708	chr19	16241885	16241886	rs62117911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.11		rs62117911-A	NR	2E-21		0.0242	[0.019-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
708	chr19	16241885	16241886	rs62117911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.11		rs62117911-A	NR	1E-11		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
708	chr19	16241885	16241886	rs62117911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.11		rs62117911-A	NR	1E-36		0.0322	[0.027-0.037] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
708	chr19	16241885	16241886	rs62117911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs62117911-?	NR	4E-32				NR [~ 8900000] (imputed)	N
708	chr19	16241885	16241886	rs62117911	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.11	RAB8A, CTD-2231E14.8	rs62117911-A	0.1474	5E-11		0.03320963	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16241885	16241886	rs62117911	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.11	RAB8A, CTD-2231E14.8	rs62117911-A	0.1474	3E-15		0.03988954	[0.03-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
708	chr19	16242887	16242887	rs200560717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	CTD-2231E14.8, RAB8A	rs200560717-TTTGG	0.186247	7E-15		0.022187248	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16242887	16242887	rs200560717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	CTD-2231E14.8, RAB8A	rs200560717-TTTGG	0.186331	3E-13		0.0196949	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
708	chr19	16243794	16243795	rs17722795	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	19p13.11	NR	rs17722795-T	0.690169	2E-13		0.032508	[0.024-0.041] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
708	chr19	16244225	16244226	rs1043407	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	19p13.11	RAB8A	rs1043407-?	NR	2E-11		0.03063	[0.022-0.04] unit increase novel	Illumina [6108953] (imputed)	N
708	chr19	16245944	16245945	rs60081675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs60081675-G	0.818458	1E-14				Affymetrix, Illumina [22063850] (imputed)	N
708	chr19	16248310	16248311	rs10418923	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs10418923-A	0.29	9E-12		0.0629	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
708	chr19	16248972	16248973	rs12462702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.11	CTD-2231E14.8, HSH2D	rs12462702-T	0.139448	7E-22		0.0303948	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16248972	16248973	rs12462702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.11	CTD-2231E14.8, HSH2D	rs12462702-T	0.139432	1E-28		0.03531167	[0.029-0.042] unit increase	Affymetrix [93095623] (imputed)	N
708	chr19	16248972	16248973	rs12462702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.11	NR	rs12462702-T	0.139709	4E-29		0.02955	[0.024-0.035] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
708	chr19	16248972	16248973	rs12462702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs12462702-T	0.171024	2E-43				Affymetrix, Illumina [20825802] (imputed)	N
708	chr19	16248972	16248973	rs12462702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.11	NR	rs12462702-T	0.139502	5E-35		0.034354	[0.029-0.04] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
708	chr19	16250736	16250737	rs45566333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	HSH2D	rs45566333-C	0.030182	2E-9		0.039617524	[0.027-0.053] unit increase	Affymetrix [93095623] (imputed)	N
709	chr19	16272688	16272689	rs73005220	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	19p13.11	NR	rs73005220-G	NR	1E-6				Illumina [10806625] (imputed)	N
709	chr19	16278053	16278054	rs4617975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	CIB3	rs4617975-C	0.761796	1E-9		0.015898	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
709	chr19	16341452	16341453	rs545618846	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Completion of the aide-memoire	361,501 European ancestry cases, 89,535 European ancestry controls	NA	19p13.11	NR	rs545618846-G	1.0	3E-8		1.32	[1.19, 1.45]	Affymetrix [39302896] (imputed)	N
709	chr19	16347014	16347015	rs148962758	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs148962758-C	0.986	2E-8				Affymetrix [10369434] (imputed)	N
709	chr19	16362899	16362900	rs8100855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11		rs8100855-T	0.731196	6E-18		0.021800168	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr19	16365585	16365586	rs34249309	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs34249309-T	0.357	6E-9				Affymetrix [10369434] (imputed)	N
709	chr19	16365585	16365586	rs34249309	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs34249309-T	0.357	6E-12				Affymetrix [10369434] (imputed)	N
709	chr19	16370487	16370488	rs12980286	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs12980286-C	0.225	9E-17				Affymetrix [10369434] (imputed)	N
709	chr19	16376709	16376710	rs7253703	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	19p13.11	NR	rs7253703-A	0.9869	4E-12		0.512	[0.37-0.66] unit decrease	Illumina [~ 10600000] (imputed)	N
710	chr19	16389275	16389276	rs112370281	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs112370281-G	0.955	3E-8				Affymetrix [10369434] (imputed)	N
710	chr19	16389275	16389276	rs112370281	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs112370281-G	0.955	2E-8				Affymetrix [10369434] (imputed)	N
710	chr19	16400822	16400823	rs12185505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs12185505-A	0.266723	1E-9		0.01540125	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16401844	16401845	rs113107801	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	19p13.11		rs113107801-?	NR	5E-8				Affymetrix [NR] (imputed)	N
710	chr19	16404520	16404521	rs454185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs454185-T	0.651303	9E-10				Affymetrix, Illumina [23467995] (imputed)	N
710	chr19	16413986	16413987	rs7245565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs7245565-?	NR	6E-11				NR [~ 8900000] (imputed)	N
710	chr19	16417197	16417198	rs34797592	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	19p13.11	NR	rs34797592-T	0.1153	4E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
710	chr19	16420816	16420817	rs285245	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	19p13.11	NR	rs285245-T	0.11	4E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [> 10000000] (imputed)	N
710	chr19	16421531	16421532	rs148701910	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	19p13.11	KLF2	rs148701910-C	0.9333	2E-6	(AA)			Illumina [NR] (imputed)	N
710	chr19	16423682	16423683	rs12461919	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs12461919-A	0.893	2E-15				Affymetrix [10369434] (imputed)	N
710	chr19	16423682	16423683	rs12461919	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs12461919-A	0.893	2E-18				Affymetrix [10369434] (imputed)	N
710	chr19	16425510	16425510	rs34753835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.11		rs34753835-AT	NR	1E-75		0.0392	[0.035-0.043] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
710	chr19	16426656	16426657	rs386869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs386869-G	0.194766	1E-135				Affymetrix, Illumina [19872809] (imputed)	N
710	chr19	16427110	16427111	rs410867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.216061	2E-97		0.06369691	[0.058-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16427110	16427111	rs410867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.216056	2E-104		0.066142246	[0.06-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16427110	16427111	rs410867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.11	NR	rs410867-G	0.216683	4E-134		0.059414	[0.055-0.064] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
710	chr19	16427110	16427111	rs410867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.11		rs410867-?	NR	2E-113				NR [~ 8900000] (imputed)	N
710	chr19	16427110	16427111	rs410867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.2164	2E-36		0.05469912	[0.046-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16427110	16427111	rs410867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.2164	1E-37		0.05587554	[0.047-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16427110	16427111	rs410867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.2164	1E-49		0.06416558	[0.056-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16427110	16427111	rs410867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.2164	3E-46		0.06209408	[0.054-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16427110	16427111	rs410867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs410867-G	0.2164	2E-43		0.06002551	[0.052-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16427400	16427401	rs57188916	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19p13.11		rs57188916-T	0.892	4E-23				Affymetrix [10369434] (imputed)	N
710	chr19	16428397	16428398	rs12978678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs12978678-G	0.281172	3E-39		0.035034228	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16429353	16429354	rs66627252	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	19p13.11		rs66627252-?	NR	5E-8				Affymetrix [NR] (imputed)	N
710	chr19	16429353	16429354	rs66627252	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.11		rs66627252-?	NR	5E-8				Affymetrix [NR] (imputed)	N
710	chr19	16430446	16430447	rs34226255	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs34226255-G	0.281069	6E-47		0.03809351	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16430446	16430447	rs34226255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs34226255-G	0.2817	4E-10		0.02511887	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16430446	16430447	rs34226255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs34226255-G	0.2816	3E-15		0.03154954	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16430446	16430447	rs34226255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.11	CTD-2562J15.6	rs34226255-G	0.2817	2E-13		0.02938102	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16430676	16430677	rs10420373	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19p13.11	AP1M1, KLF2	rs10420373-?	NR	2E-8		0.0568752	[0.037-0.077] unit decrease	Illumina [19707525] (imputed)	N
710	chr19	16431995	16431996	rs79272900	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19p13.11		rs79272900-A	0.826	2E-30				Affymetrix [10369434] (imputed)	N
710	chr19	16435232	16435233	rs8102266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs8102266-G	0.122002	2E-11		0.023127412	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16436261	16436262	rs3745318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	19p13.11		rs3745318-C	NR	3E-9		0.0741	[0.05-0.099] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
710	chr19	16436261	16436262	rs3745318	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	19p13.11	KLF2	rs3745318-T	0.2496	1E-11		0.1396	[0.099-0.18] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
710	chr19	16436568	16436569	rs45586037	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs45586037-G	0.981	3E-10				Affymetrix [10369434] (imputed)	N
710	chr19	16436568	16436569	rs45586037	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs45586037-G	0.981	5E-16				Affymetrix [10369434] (imputed)	N
710	chr19	16437047	16437048	rs12462380	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.11	KLF2	rs12462380-A	0.57864	2E-9		0.0113738	[0.0077-0.0151] unit decrease	NR [13737936] (imputed)	N
710	chr19	16438314	16438315	rs8810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	KLF2	rs8810-T	0.301549	6E-19		0.021668643	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16438660	16438661	rs11086029	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	19p13.11	NR	rs11086029-T	0.24	7E-11		1.14		Illumina [up to 10291845] (imputed)	N
710	chr19	16439519	16439520	rs553901631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs553901631-G	0.00198600000000004	2E-18		0.25420415	[0.2-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16439519	16439520	rs553901631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	CTD-2562J15.6	rs553901631-G	0.00198600000000004	1E-16		0.23993288	[0.18-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16439834	16439835	rs2362475	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.11	KLF2	rs2362475-A	NR	7E-7		0.9	[0.86-0.94]	Illumina [3860730] (imputed)	N
710	chr19	16439834	16439835	rs2362475	33493351	Song Q	2021-01-25	Rheumatology (Oxford)	Genome-wide association study on Northern Chinese identifies KLF2, DOT1L and STAB2 associated with systemic lupus erythematosus.	Systemic lupus erythematosus	4,734 Chinese ancestry cases, 9,425 Chinese ancestry controls	NA	19p13.11	KLF2	rs2362475-A	0.467	2E-9		0.85	[0.8-0.9]	Illumina [at least 3860730] (imputed)	N
710	chr19	16441042	16441043	rs34697792	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19p13.11		rs34697792-C	0.875	2E-10				Affymetrix [10369434] (imputed)	N
710	chr19	16441972	16441973	rs56133626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs56133626-G	0.672	4E-66				Affymetrix [10369434] (imputed)	N
710	chr19	16441972	16441973	rs56133626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.11		rs56133626-G	0.672	3E-59				Affymetrix [10369434] (imputed)	N
710	chr19	16441972	16441973	rs56133626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs56133626-G	0.672	4E-45				Affymetrix [10369434] (imputed)	N
710	chr19	16441972	16441973	rs56133626	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs56133626-G	0.672	8E-80				Affymetrix [10369434] (imputed)	N
710	chr19	16441972	16441973	rs56133626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	KLF2	rs56133626-A	0.32749	1E-12		0.020340636	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16441972	16441973	rs56133626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	KLF2	rs56133626-A	0.327509	4E-49		0.03863886	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16441972	16441973	rs56133626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	KLF2	rs56133626-A	0.327509	5E-134		0.05943935	[0.055-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16441972	16441973	rs56133626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.11	KLF2	rs56133626-A	0.3287	3E-48		0.05559056	[0.048-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16441982	16441983	rs569620730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	KLF2	rs569620730-T	0.489772	9E-20		0.022702135	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16441982	16441983	rs569620730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	KLF2	rs569620730-T	0.489773	9E-11		0.016194716	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16442018	16442019	rs55908509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.11	KLF2	rs55908509-A	0.3294	2E-71		0.06866057	[0.061-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16442022	16442023	rs7246669	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24 on CD24+ CD27+ B cell	3,654 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.11		rs7246669-G	0.7281299999999999	4E-8		0.1513	[0.097-0.205] unit increase	Illumina [18237589] (imputed)	N
710	chr19	16442781	16442782	rs34006614	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19p13.11	KLF2	rs34006614-T	0.33	1E-8				NR [> 9500000] (imputed)	N
710	chr19	16443718	16443719	rs71178685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11		rs71178685-T	0.747635	2E-11		0.019775346	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16444696	16444697	rs10423726	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11		rs10423726-A	0.580093	5E-18		0.024347462	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16444696	16444697	rs10423726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.11	intergenic	rs10423726-A	0.5786	1E-22		0.03777109	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16450601	16450602	rs12973981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs12973981-T	0.661062	8E-349				Affymetrix, Illumina [23472807] (imputed)	N
710	chr19	16456259	16456260	rs1004246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.11		rs1004246-?	NR	3E-8				NR [~ 8900000] (imputed)	N
710	chr19	16461324	16461325	rs6512104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19p13.11		rs6512104-A	NR	3E-15		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
710	chr19	16461324	16461325	rs6512104	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs6512104-A	0.67	4E-11		0.0638	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
710	chr19	16464026	16464027	rs28510563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19p13.11	EPS15L1	rs28510563-G	0.1773	2E-11		0.03153026	[0.022-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16464026	16464027	rs28510563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19p13.11	EPS15L1	rs28510563-G	0.1773	5E-12		0.03269469	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16467758	16467759	rs875622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.11	EPS15L1	rs875622-G	0.7722	2E-39		0.056111	[0.048-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16467758	16467759	rs875622	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	19p13.11	EPS15L1	rs875622-?	0.19	4E-6				Illumina [565404]	N
710	chr19	16477254	16477255	rs10404046	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	19p13.11	EPS15L1	rs10404046-?	NR	7E-13		0.04706	[0.034-0.06] unit decrease novel	Illumina [6108953] (imputed)	N
710	chr19	16482574	16482574	rs112490789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	EPS15L1	rs112490789-TA	0.177139	2E-12		0.021046693	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16489446	16489447	rs78663649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19p13.11	EPS15L1	rs78663649-T	0.11	1E-29		0.06479108	[0.054-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16495286	16495287	rs3786586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.11		rs3786586-?	NR	8E-25				NR [~ 8900000] (imputed)	N
710	chr19	16495773	16495774	rs2290669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.11		rs2290669-C	NR	2E-41		0.0309	[0.026-0.035] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
710	chr19	16495773	16495774	rs2290669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	19p13.11		rs2290669-C	0.698082	4E-8		0.0203875	[0.013-0.028] unit decrease	Illumina [13479091] (imputed)	N
710	chr19	16495773	16495774	rs2290669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs2290669-C	0.762745	2E-94				Affymetrix, Illumina [24649327] (imputed)	N
710	chr19	16495773	16495774	rs2290669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.11	NR	rs2290669-C	0.786444	2E-94		0.047616	[0.043-0.052] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
710	chr19	16495773	16495774	rs2290669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.11		rs2290669-?	NR	5E-58				NR [~ 8900000] (imputed)	N
710	chr19	16499568	16499569	rs7251806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs7251806-C	0.159	7E-97				Affymetrix [10369434] (imputed)	N
710	chr19	16499568	16499569	rs7251806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.11		rs7251806-C	0.159	2E-101				Affymetrix [10369434] (imputed)	N
710	chr19	16499568	16499569	rs7251806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs7251806-C	0.159	2E-81				Affymetrix [10369434] (imputed)	N
710	chr19	16499568	16499569	rs7251806	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs7251806-C	0.159	8E-139				Affymetrix [10369434] (imputed)	N
710	chr19	16499568	16499569	rs7251806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	EPS15L1	rs7251806-T	0.841335	3E-84		0.060775816	[0.055-0.067] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16499568	16499569	rs7251806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	EPS15L1	rs7251806-T	0.841341	4E-136		0.07684013	[0.071-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16499568	16499569	rs7251806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	EPS15L1	rs7251806-T	0.841328	2E-242		0.10319618	[0.097-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr19	16499568	16499569	rs7251806	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.11	EPS15L1	rs7251806-T	0.842	7E-132		0.120499	[0.11-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
710	chr19	16505105	16505106	rs1870071	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19p13.11	EPS15L1	rs1870071-G	0.3	2E-15		1.1		Illumina [161311]	N
710	chr19	16511170	16511171	rs10404237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	EPS15L1	rs10404237-C	0.287607	6E-19		0.02233093	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
710	chr19	16514770	16514771	rs873636	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19p13.11		rs873636-A	0.692	2E-28				Affymetrix [10369434] (imputed)	N
710	chr19	16514770	16514771	rs873636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.11	EPS15L1	rs873636-G	0.307657	4E-22		0.023253998	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
711	chr19	16525390	16525391	rs10421112	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19p13.11		rs10421112-C	0.695	1E-12				Affymetrix [10369434] (imputed)	N
711	chr19	16527833	16527834	rs4808047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.11	EPS15L1	rs4808047-C	0.1549	4E-13		0.03563354	[0.026-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
711	chr19	16533225	16533225	rs57143961	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	19p13.11		rs57143961-CT	0.8403	5E-8		0.0858	[0.055-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
711	chr19	16533225	16533225	rs57143961	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	16,201 African American or Afro-Caribbean individuals	NA	19p13.11		rs57143961-CT	0.755	6E-12		0.126	[0.09-0.162] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
711	chr19	16533225	16533225	rs57143961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	EPS15L1	rs57143961-CT	0.150034	3E-55		0.049463075	[0.043-0.056] unit increase	Affymetrix [93095623] (imputed)	N
711	chr19	16533225	16533225	rs57143961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	EPS15L1	rs57143961-CT	0.15009	4E-20		0.028523948	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr19	16533225	16533225	rs57143961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.11	EPS15L1	rs57143961-CT	0.1496	3E-70		0.08846508	[0.079-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
711	chr19	16533234	16533234	rs397829760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.11		rs397829760-CT	NR	3E-233		0.1082	[0.1-0.11] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
711	chr19	16534206	16534207	rs4545941	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19p13.11	EPS15L1	rs4545941-T	0.831369	1E-8		0.0108751	[0.0071-0.0146] unit decrease	Affymetrix [12370749]	N
711	chr19	16539797	16539798	rs35920637	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	19p13.11		rs35920637-?	NR	5E-8				Affymetrix [NR] (imputed)	N
711	chr19	16548374	16548375	rs10411936	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	19p13.11	EPS15L1	rs10411936-A	0.30	2E-7		1.16	[NR]	Affymetrix, Illumina [2529394]	N
711	chr19	16548374	16548375	rs10411936	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	19p13.11	EPS15L1, C19orf44, CALR3	rs10411936-A		3E-12	(Lymphocytes)	0.0152	[0.011-0.020] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
711	chr19	16555152	16555153	rs11878602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs11878602-C	0.315482	9E-23				Affymetrix, Illumina [19905671] (imputed)	N
711	chr19	16558765	16558766	rs7256818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.11	NR	rs7256818-A	0.306033	9E-376		0.085092	[0.081-0.089] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
711	chr19	16559367	16559368	rs57839742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	19p13.11	NR	rs57839742-A	0.715082	8E-23		0.053559	[0.043-0.064] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
711	chr19	16559420	16559421	rs58166386	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.11	EPS15L1	rs58166386-G	NR	4E-24		1.108	NR	Affymetrix, Illumina [8278136] (imputed)	N
711	chr19	16576990	16576991	rs10408945	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.11	EPS15L1	rs10408945-T	0.1451	5E-42		0.0693981	[0.059-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
711	chr19	16588834	16588835	rs76323852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	CALR3, CTD-3222D19.2	rs76323852-A	0.144858	5E-10		0.020082098	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr19	16588834	16588835	rs76323852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	CALR3, CTD-3222D19.2	rs76323852-A	0.144853	7E-14		0.024189414	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
711	chr19	16601933	16601934	rs6512115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	19p13.11		rs6512115-A	0.764636	3E-19		0.0469702	[0.037-0.057] unit decrease	Illumina [13471431] (imputed)	N
711	chr19	16618130	16618131	rs75929425	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19p13.11		rs75929425-G	0.949	1E-8				Affymetrix [10369434] (imputed)	N
711	chr19	16623263	16623264	rs77609700	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19p13.11		rs77609700-G	0.96	3E-9				Affymetrix [10369434] (imputed)	N
711	chr19	16628185	16628186	rs28447467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19p13.11		rs28447467-G	0.859	9E-30				Affymetrix [10369434] (imputed)	N
711	chr19	16628185	16628186	rs28447467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19p13.11		rs28447467-G	0.859	8E-30				Affymetrix [10369434] (imputed)	N
711	chr19	16628185	16628186	rs28447467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs28447467-G	0.859	9E-27				Affymetrix [10369434] (imputed)	N
711	chr19	16628185	16628186	rs28447467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs28447467-G	0.859	3E-45				Affymetrix [10369434] (imputed)	N
711	chr19	16628185	16628186	rs28447467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	C19orf44, CTD-3222D19.2	rs28447467-A	0.140805	3E-25		0.03394738	[0.028-0.04] unit increase	Affymetrix [93095623] (imputed)	N
712	chr19	16654443	16654444	rs11669407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	CTD-3222D19.7	rs11669407-A	0.157076	1E-10		0.019894578	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
712	chr19	16658005	16658006	rs144971297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.11		rs144971297-?	NR	5E-8				NR [~ 8900000] (imputed)	N
712	chr19	16664263	16664264	rs1985857	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	19p13.11		rs1985857-?	NR	5E-8				Affymetrix [NR] (imputed)	N
712	chr19	16665214	16665215	rs6512119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs6512119-?	NR	2E-10				NR [~ 8900000] (imputed)	N
712	chr19	16694609	16694610	rs12462428	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	19p13.11	ENSG00000141979, MED26, CTC-429P9.4	rs12462428-?	NR	2E-8		0.014301331	[0.0093-0.0193] unit increase	NR [7306098]	N
712	chr19	16694609	16694610	rs12462428	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	19p13.11	NR	rs12462428-T	0.8068	3E-8		0.015544813	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
712	chr19	16701710	16701710	rs201957302	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	19p13.11	NR	rs201957302-?	NR	7E-6		0.7657	[0.47-1.06] unit increase	Illumina [at least 560000] (imputed)	N
712	chr19	16752172	16752173	rs57153090	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	19p13.11		rs57153090-?	NR	5E-8				Affymetrix [NR] (imputed)	N
713	chr19	16802008	16802009	rs2633339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19p13.11		rs2633339-T	0.05	5E-20				Affymetrix [10369434] (imputed)	N
713	chr19	16808182	16808183	rs2633350	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	19p13.11	NA	rs2633350-C	0.4148	9E-6		0.3033	[0.1765-0.521]	Illumina [243345]	N
713	chr19	16844731	16844732	rs28650403	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	19p13.11	NWD1	rs28650403-G	NR	1E-6	(BDRBASE)	1.26	[0.75-1.77] unit decrease	Illumina [NR] (imputed)	N
714	chr19	16913220	16913221	rs4808055	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	19p13.11		rs4808055-C	NR	9E-6		1.0499	[0.6-1.5] unit increase	Illumina [NR] (imputed)	N
714	chr19	16998718	16998719	rs56298289	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	19p13.11	NR	rs56298289-?	NR	3E-10				Affymetrix, Illumina [6210740] (imputed)	N
714	chr19	16999699	16999700	rs2227341	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	19p13.11	NR	rs2227341-G	0.8216	6E-25		1.3482	[1.09-1.6] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
714	chr19	17024532	17024533	rs8102899	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p13.11	F2RL3	rs8102899-?	NR	5E-6	(deoxycholate)	0.6907942	[0.39-0.99] unit decrease	Affymetrix [at least 2500000] (imputed)	N
715	chr19	17050912	17050913	rs28489391	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19p13.11	NR	rs28489391-?	NR	7E-23		9.843	NR z score decrease	Illumina [at least 830937] (imputed)	N
715	chr19	17069222	17069223	rs4808540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs4808540-?	NR	6E-14				NR [~ 8900000] (imputed)	N
715	chr19	17071263	17071265	rs79746442	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.11	CPAMD8	rs79746442-T	0.2003	4E-6		0.0366	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
715	chr19	17089030	17089031	rs73016337	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	19p13.11	CPAMD8	rs73016337-?	0.017000000000000015	1E-6		1.5079889	[1.22-1.86]	Affymetrix, Illumina [7701827] (imputed)	N
715	chr19	17100549	17100550	rs61744414	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		CPAMD8	rs61744414-T	NR	5E-13		1.1	[1.07-1.13]	Affymetrix [9869154] (imputed)	N
715	chr19	17110325	17110326	rs76217667	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.11		rs76217667-T	0.1	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
715	chr19	17110325	17110326	rs76217667	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.11		rs76217667-T	0.1	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
715	chr19	17110325	17110326	rs76217667	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.11		rs76217667-T	0.1	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
715	chr19	17110325	17110326	rs76217667	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.11	NR	rs76217667-T	0.0762	5E-8				NR [9056863] (imputed)	N
715	chr19	17112414	17112415	rs117316623	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs117316623-T	NR	3E-11		0.0466	[0.033-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
715	chr19	17118432	17118433	rs11666377	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Brain lesion load	791 European ancestry cases, 883 European ancestry controls	NA	19p13.11	CPAMD8	rs11666377-?	0.14	7E-6			[NR]	Illumina [551642]	N
715	chr19	17157607	17157608	rs118025973	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs118025973-T	NR	1E-11		0.0345	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
715	chr19	17158026	17158027	rs12982665	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.11	NR	rs12982665-T	0.1929	6E-7		0.0124	[0.0075-0.0173] unit decrease	NR [~ 27400000] (imputed)	N
715	chr19	17158144	17158145	rs67257959	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	19p13.11	MYO9B, HAUS8	rs67257959-C		2E-7		1.25	[NR]	Illumina [up to 9464381] (imputed)	N
715	chr19	17161417	17161418	rs116999135	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	19p13.11	HAUS8	rs116999135-T	NR	5E-6		0.0383363	[0.022-0.055] unit increase	Illumina [13520550] (imputed)	N
715	chr19	17161686	17161687	rs12461016	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.11	intergenic	rs12461016-A	0.395	4E-7	(EA, initial)	0.228	[0.14-0.32] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
715	chr19	17161686	17161687	rs12461016	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19p13.11	intergenic	rs12461016-A	0.395	2E-7		0.135	[0.084-0.186] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
715	chr19	17167722	17167723	rs73504817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	19p13.11	NR	rs73504817-T	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
715	chr19	17167722	17167723	rs73504817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	19p13.11	NR	rs73504817-T	NR	2E-6				Affymetrix [~ 8270000] (imputed)	N
716	chr19	17180357	17180358	rs12461874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	HAUS8	rs12461874-A	0.278621	8E-9		0.0175249	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17189785	17189786	rs1379281	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	NR	rs1379281-A	0.3342	1E-8	(East Asian)	0.272	[0.18-0.37] unit increase	Illumina [6200000] (imputed)	N
716	chr19	17194833	17194849	rs144744357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	MYO9B	rs144744357-T	0.226099	2E-25		0.028731184	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17194833	17194849	rs144744357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19p13.11	MYO9B	rs144744357-T	0.226105	5E-33		0.032725792	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17194833	17194849	rs144744357	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.11	MYO9B	rs144744357-T	0.2297	4E-10		0.02758816	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17197687	17197688	rs773603759	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	19p13.11	MYO9B	rs773603759-CT	0.9929	2E-6		1.1286	[0.66-1.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
716	chr19	17198712	17198713	rs59243439	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19p13.11		rs59243439-A	NR	2E-10		0.0428	[0.03-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
716	chr19	17202745	17202746	rs7254827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.11	NR	rs7254827-T	0.221364	1E-33		0.026638	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
716	chr19	17202745	17202746	rs7254827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs7254827-A	0.782467	1E-48				Affymetrix, Illumina [17210439] (imputed)	N
716	chr19	17202745	17202746	rs7254827	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19p13.11	NR	rs7254827-A	0.777488	9E-52		0.034922	[0.03-0.039] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
716	chr19	17202745	17202746	rs7254827	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19p13.11	MYO9B	rs7254827-T	0.2235	3E-17		0.0365937	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17204326	17204327	rs16981598	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs16981598-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
716	chr19	17204326	17204327	rs16981598	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs16981598-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
716	chr19	17209144	17209145	rs113642564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs113642564-A	NR	2E-11		0.0349	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
716	chr19	17210614	17210615	rs7249698	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs7249698-A	0.3594	4E-7	(EA)	0.0327	[0.02-0.045] unit decrease	Illumina [~ 11800000] (imputed)	N
716	chr19	17211567	17211568	rs10423719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.11	MYO9B	rs10423719-C	0.362538	2E-9		0.014322222	[0.0096-0.019] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17212181	17212182	rs56937714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	MYO9B	rs56937714-T	NR	1E-10		0.0200011	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
716	chr19	17212181	17212182	rs56937714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	MYO9B	rs56937714-T	NR	9E-11		0.020181	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
716	chr19	17212181	17212182	rs56937714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	MYO9B	rs56937714-T	NR	4E-9		0.0184815	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
716	chr19	17212409	17212410	rs3745348	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	19p13.11		rs3745348-?	NR	2E-6		0.964714	[0.95-0.98]	NR [688737]	N
716	chr19	17212409	17212410	rs3745348	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.11	MYO9B	rs3745348-T	0.3421	4E-14		0.2599	[0.19-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
716	chr19	17212409	17212410	rs3745348	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19p13.11	MYO9B	rs3745348-T	0.3114	7E-8		0.0325	[0.021-0.044] unit increase	NR [8041861] (imputed)	N
716	chr19	17212988	17212989	rs117386912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs117386912-T	NR	3E-11		0.0588	[0.042-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
716	chr19	17213535	17213536	rs7251862	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.11	NR	rs7251862-T	0.3048	1E-10				NR [9056863] (imputed)	N
716	chr19	17214050	17214051	rs4808566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs4808566-G	0.204513	1E-13		0.021669528	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17214072	17214073	rs11666569	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	19p13.11	MYO9B	rs11666569-C	NR	3E-6		1.11	[NR]	Illumina [20370935] (imputed)	N
716	chr19	17214072	17214073	rs11666569	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19p13.11	MYO9B	rs11666569-C	0.71	8E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
716	chr19	17217864	17217864	rs60139334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	MYO9B	rs60139334-AC	0.566465	2E-11		0.015427971	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17217864	17217864	rs60139334	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19p13.11	MYO9B	rs60139334-A	0.428561	4E-8		1.0337969	1.02158090249659-1.04615888430589]	NR [9572556] (imputed)	N
716	chr19	17218969	17218970	rs4808569	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.11	MYO9B	rs4808569-C		1E-6		0.235	unit increase	Affymetrix [at least 2696785] (imputed)	N
716	chr19	17218969	17218970	rs4808569	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.11	MYO9B	rs4808569-C		5E-8		0.162	unit increase	Affymetrix [at least 2696785] (imputed)	N
716	chr19	17219104	17219105	rs7246865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.11		rs7246865-A	NR	8E-11		0.0136	[0.0095-0.0177] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
716	chr19	17219104	17219105	rs7246865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.11		rs7246865-A	NR	2E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
716	chr19	17219104	17219105	rs7246865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.11		rs7246865-A	NR	4E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
716	chr19	17219104	17219105	rs7246865	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.11	MYO9B	rs7246865-A	0.2606	1E-21		0.0208	[0.016-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
716	chr19	17219104	17219105	rs7246865	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19p13.11	MYO9B	rs7246865-A	0.257107	7E-13		0.050054006	[0.036-0.064] unit increase	Affymetrix [7288503] (imputed)	N
716	chr19	17219104	17219105	rs7246865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.11		rs7246865-?	NR	2E-13				NR [~ 8900000] (imputed)	N
716	chr19	17219104	17219105	rs7246865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.11		rs7246865-?	NR	6E-17				NR [~ 8900000] (imputed)	N
716	chr19	17219104	17219105	rs7246865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.11		rs7246865-?	NR	8E-19				NR [~ 8900000] (imputed)	N
716	chr19	17219104	17219105	rs7246865	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.11	MYO9B	rs7246865-A	0.2631	4E-9		0.02432812	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17219462	17219463	rs75585236	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19p13.11	MYO9B	rs75585236-?	NR	7E-8		0.0992352	[0.063-0.135] unit decrease	Illumina [19707525] (imputed)	N
716	chr19	17222583	17222584	rs1077795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	MYO9B	rs1077795-G	NR	2E-11		0.0214704	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
716	chr19	17222583	17222584	rs1077795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	MYO9B	rs1077795-G	NR	3E-11		0.021354	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
716	chr19	17222583	17222584	rs1077795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	MYO9B	rs1077795-G	NR	4E-8		0.017858	[0.011-0.024] unit decrease	Affymetrix [321169] (imputed)	N
716	chr19	17222583	17222584	rs1077795	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs1077795-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
716	chr19	17222583	17222584	rs1077795	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.11	NR	rs1077795-A	0.7415	4E-10		0.0141	[0.0096-0.0186] unit increase	NR [~ 27400000] (imputed)	N
716	chr19	17225127	17225128	rs10421727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11	MYO9B	rs10421727-A	0.296657	2E-10		0.016094636	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17227334	17227335	rs8101673	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	19p13.11	NR	rs8101673-T	0.3336	3E-8	(East Asian)	0.0691	[0.045-0.093] unit increase	Illumina [6200000] (imputed)	N
716	chr19	17228553	17228554	rs10412482	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19p13.11	NR	rs10412482-C	NR	2E-12		1.053	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
716	chr19	17232498	17232499	rs11667918	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	19p13.11	MYO9B	rs11667918-C	0.62	9E-12		0.06	[0.040-0.080] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
716	chr19	17238412	17238413	rs12982956	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	19p13.11	MYO9B	rs12982956-A	0.6145	7E-17		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
716	chr19	17238412	17238413	rs12982956	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	19p13.11	MYO9B	rs12982956-?	NR	2E-8		0.0254	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
716	chr19	17239114	17239115	rs11671326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	19p13.11	NR	rs11671326-C	0.663734	2E-11		0.028444	[0.02-0.037] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
716	chr19	17239692	17239693	rs7255902	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs7255902-G	NR	2E-30		0.0314	[0.026-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
716	chr19	17240392	17240393	rs73928486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs73928486-A	0.187479	9E-36				Affymetrix, Illumina [24246363] (imputed)	N
716	chr19	17240392	17240393	rs73928486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.11	MYO9B	rs73928486-A	0.2041	2E-13		0.03293184	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17240392	17240393	rs73928486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.11	MYO9B	rs73928486-A	0.204	3E-9		0.02619534	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17246736	17246737	rs11086054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	19p13.11		rs11086054-T	0.333859	2E-13		0.0285192	[0.021-0.036] unit increase	Illumina [13477028] (imputed)	N
716	chr19	17246736	17246737	rs11086054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	19p13.11	MYO9B	rs11086054-?	NR	4E-11		0.03002	[0.021-0.039] unit increase novel	Illumina [6108953] (imputed)	N
716	chr19	17246736	17246737	rs11086054	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	19p13.11	MYO9B	rs11086054-A	0.6753	8E-6		0.0097	[0.0054-0.014] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
716	chr19	17246736	17246737	rs11086054	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	19p13.11	MYO9B	rs11086054-A	0.5685	2E-9		0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
716	chr19	17246860	17246861	rs12983320	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs12983320-C	NR	2E-12		0.0238	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
716	chr19	17248865	17248866	rs28473332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.11		rs28473332-T	NR	3E-23		0.0262	[0.021-0.031] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
716	chr19	17252040	17252041	rs59616136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19p13.11		rs59616136-A	0.289195	3E-9		0.024534	[0.016-0.033] unit decrease	Illumina [13476266] (imputed)	N
716	chr19	17252040	17252041	rs59616136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.11		rs59616136-A	NR	4E-37		0.0373	[0.032-0.043] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0927980000000001	3E-20		0.037928864	[0.03-0.046] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092795	1E-17		0.034925763	[0.027-0.043] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0929219999999999	2E-17		0.03423385	[0.026-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0928870000000001	6E-12		0.028490076	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092915	6E-11		0.02676207	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.09283	7E-63		0.07065674	[0.062-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092804	8E-14		0.030538475	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092912	1E-13		0.0369187	[0.03-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092896	2E-31		0.0558676	[0.048-0.063] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092847	4E-12		0.028108241	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	MYO9B	rs59616136-A	0.092847	6E-13		0.02918542	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0966	6E-18		0.05311937	[0.041-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0966	1E-18		0.0542376	[0.042-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0967	8E-18		0.05214802	[0.04-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0968	7E-18		0.05112401	[0.039-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0966	6E-11		0.04021461	[0.028-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252040	17252041	rs59616136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19p13.11	MYO9B	rs59616136-A	0.0966	2E-11		0.04109676	[0.029-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252150	17252151	rs35365035	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	19p13.11	MYO9B	rs35365035-?	NR	1E-14		1.2	NR unit increase	NR [14100000] (imputed)	N
716	chr19	17252150	17252151	rs35365035	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	19p13.11	MYO9B	rs35365035-?	NR	5E-8				NR [14100000] (imputed)	N
716	chr19	17252150	17252151	rs35365035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs35365035-T	0.603652	4E-63				Affymetrix, Illumina [22063850] (imputed)	N
716	chr19	17252150	17252151	rs35365035	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.11	NR	rs35365035-T	0.610149	1E-63		0.032559	[0.029-0.036] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
716	chr19	17252150	17252151	rs35365035	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.11	MYO9B	rs35365035-C	0.3903	2E-16		0.02994173	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252383	17252383	rs59922977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	MYO9B	rs59922977-TC	0.391782	2E-25		0.024978826	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252383	17252383	rs59922977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	MYO9B	rs59922977-TC	0.391793	1E-21		0.022080958	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252383	17252383	rs59922977	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.11	MYO9B	rs59922977-TC	0.3912	9E-14		0.02795959	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17252973	17252974	rs61166126	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	19p13.11	MYO9B	rs61166126-?	NR	1E-12		0.0553	NR L decrease	Affymetrix [9390170] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.11	MYO9B	rs61166126-C	0.310142	1E-9		0.016110392	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs61166126-C	0.310486	2E-63		0.04483475	[0.04-0.05] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11	MYO9B	rs61166126-C	0.310417	1E-11		0.018035933	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs61166126-C	0.310389	4E-15		0.0256533	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	MYO9B	rs61166126-C	0.31041	1E-29		0.0390432	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs61166126-C	0.308678	3E-55				Affymetrix, Illumina [21126107] (imputed)	N
716	chr19	17252973	17252974	rs61166126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.11	NR	rs61166126-C	0.30892	3E-54		0.036696	[0.032-0.041] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
716	chr19	17252973	17252974	rs61166126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19p13.11	MYO9B	rs61166126-C	0.3058	2E-15		0.03126856	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
716	chr19	17254507	17254508	rs11881955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	MYO9B	rs11881955-G	0.389954	2E-40		0.031332776	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
716	chr19	17254507	17254508	rs11881955	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.11	MYO9B	rs11881955-G	NR	3E-14		0.0302386	[0.022-0.038] unit increase	Affymetrix [16832071] (imputed)	N
716	chr19	17255733	17255734	rs4808579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19p13.11		rs4808579-C	NR	5E-19		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
716	chr19	17255733	17255734	rs4808579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs4808579-C	0.408064	3E-32				Affymetrix, Illumina [24588908] (imputed)	N
716	chr19	17255733	17255734	rs4808579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.11		rs4808579-?	NR	1E-58				NR [~ 8900000] (imputed)	N
716	chr19	17256522	17256523	rs17533903	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	19p13.11	MYO9B	rs17533903-A	0.2428	5E-12		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
716	chr19	17256797	17256798	rs12984096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19p13.11		rs12984096-C	NR	2E-87		0.0467	[0.042-0.051] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
716	chr19	17257801	17257802	rs17533945	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	19p13.11	MYO9B	rs17533945-T	0.6009	2E-23		0.0128	[0.01-0.016] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
716	chr19	17257801	17257802	rs17533945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	19p13.11	NR	rs17533945-T	0.549847	6E-13		0.028635	[0.021-0.036] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
716	chr19	17257801	17257802	rs17533945	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.11	NR	rs17533945-C	0.389597	4E-33		0.022525	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
716	chr19	17258614	17258614	rs140594952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19p13.11		rs140594952-GCTT	0.447073	1E-13		0.0254846	[0.019-0.032] unit increase	Illumina [13478928] (imputed)	N
716	chr19	17258614	17258614	rs140594952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	MYO9B	rs140594952-GCTT	0.38786	2E-26		0.025963383	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17258614	17258614	rs140594952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	MYO9B	rs140594952-GCTT	0.387868	3E-29		0.027396923	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17258614	17258614	rs140594952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	MYO9B	rs140594952-GCTT	0.387944	3E-17		0.020485414	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17258614	17258614	rs140594952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	MYO9B	rs140594952-GCTT	0.387938	1E-17		0.02074461	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
716	chr19	17264960	17264961	rs2305769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.11		rs2305769-C	0.339178	2E-8		0.0122958	[0.008-0.0166] unit decrease	Illumina [13479295] (imputed)	N
716	chr19	17264960	17264961	rs2305769	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.11	MYO9B	rs2305769-?	NR	8E-9		0.018047206	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
716	chr19	17269509	17269510	rs11672280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs11672280-T	NR	3E-12		0.0272	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
716	chr19	17275776	17275777	rs34831515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs34831515-?	NR	9E-34				NR [~ 8900000] (imputed)	N
716	chr19	17283302	17283303	rs2279008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.11	NR	rs2279008-C	NR	6E-14		0.0217	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
716	chr19	17283302	17283303	rs2279008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs2279008-C	NR	2E-9		0.0168	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
716	chr19	17283302	17283303	rs2279008	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19p13.11	MYO9B	rs2279008-T	0.74	3E-8		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
716	chr19	17287813	17287814	rs4808584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.11		rs4808584-A	NR	4E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
716	chr19	17295001	17295002	rs188493101	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19p13.11	NR	rs188493101-?	NR	1E-6		0.6195	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
716	chr19	17298760	17298761	rs371481926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	6,293 European ancestry cases, 467,985 European ancestry controls, 12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	19p13.11		rs371481926-T	NR	6E-9		1.9588	[1.3-2.62] unit increase	Affymetrix, Illumina [25842546] (imputed)	N
716	chr19	17298760	17298761	rs371481926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	19p13.11		rs371481926-T	4.88569E-4	6E-9		1.958806	[1.3-2.62] unit increase	Illumina [13429311] (imputed)	N
716	chr19	17299145	17299146	rs3826692	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	19p13.11	MYO9B	rs3826692-?	NR	7E-11		0.008561	[0.0042-0.0129] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
717	chr19	17303773	17303774	rs1545620	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	19p13.11	NA	rs1545620-T	0.358	8E-6		2.87	[1.796-4.586]	Illumina [243345]	N
717	chr19	17307812	17307813	rs115436704	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	19p13.11	MYO9B, USE1, OCEL1, NR2F6	rs115436704-A	NR	9E-7	(sleep onset irregularity)	0.1461	[0.088-0.204] unit increase	Affymetrix [7141204] (imputed)	N
717	chr19	17312225	17312226	rs116189680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	19p13.11	NR	rs116189680-A	NR	2E-14		0.0591	[0.044-0.074] unit increase	Affymetrix [9000000] (imputed)	N
717	chr19	17312225	17312226	rs116189680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.11	NR	rs116189680-A	NR	7E-78		0.1439	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
717	chr19	17318819	17318819	rs562832939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	MYO9B	rs562832939-CA	0.39744	9E-11		0.015290263	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr19	17318819	17318819	rs562832939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	MYO9B	rs562832939-CA	0.397457	3E-15		0.018372878	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
717	chr19	17318819	17318819	rs562832939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	MYO9B	rs562832939-CA	0.397462	6E-16		0.018813	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
717	chr19	17326566	17326567	rs388484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	USE1	rs388484-T	0.617885	4E-10		0.014500717	[0.0099-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
717	chr19	17326566	17326567	rs388484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	USE1	rs388484-T	0.617882	5E-11		0.015248629	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
717	chr19	17329348	17329349	rs2343616	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.11	NR	rs2343616-A	0.41886199999999996	1E-11		0.00525621	[0.0036-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
717	chr19	17329348	17329349	rs2343616	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.11	NR	rs2343616-A	0.41886199999999996	2E-10		0.00576251	[0.0039-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
717	chr19	17337881	17337882	rs891203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.11	NR	rs891203-G	NR	3E-10		0.0238	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
717	chr19	17346440	17346441	rs146497684	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.11	NR	rs146497684-T	0.03032800000000002	1E-29		0.0442434	[0.036-0.052] unit increase	Affymetrix [16578495] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19p13.11	NR	rs202200760-C	0.03869800000000001	9E-48		0.120055	[0.1-0.14] unit increase	Affymetrix [16577313] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.11	NR	rs202200760-C	0.03882600000000003	3E-233		0.0734377	[0.069-0.078] unit increase	Affymetrix [16582909] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.11	NR	rs202200760-C	0.03903000000000001	5E-120		0.0761487	[0.069-0.083] unit increase	Affymetrix [16585854] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.11	NR	rs202200760-C	0.03861000000000003	5E-112		0.0706847	[0.064-0.077] unit increase	Affymetrix [16582621] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.11	NR	rs202200760-C	0.03882600000000003	8E-191		0.0748418	[0.07-0.08] unit increase	Affymetrix [16582965] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.11	NR	rs202200760-C	0.03903000000000001	7E-94		0.0788123	[0.071-0.087] unit increase	Affymetrix [16585866] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.11	NR	rs202200760-C	0.03861000000000003	4E-98		0.0711034	[0.064-0.078] unit increase	Affymetrix [16582614] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19p13.11	NR	rs202200760-G	0.961111	8E-13		0.0396479	[0.029-0.051] unit increase	Affymetrix [16583148] (imputed)	N
717	chr19	17346853	17346854	rs202200760	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19p13.11	NR	rs202200760-G	0.960954	2E-19		0.0627387	[0.049-0.077] unit increase	Affymetrix [16585745] (imputed)	N
717	chr19	17365086	17365087	rs139891465	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.11	NR	rs139891465-T	0.158147	1E-17		0.0454	[0.035-0.056] unit increase	Affymetrix [23037915] (imputed)	N
717	chr19	17389202	17389203	rs138497565	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	19p13.11		rs138497565-?	NR	3E-7		1.47371		NR [NR] (imputed)	N
717	chr19	17389703	17389704	rs8170	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19p13.11	MERIT40	rs8170-?	0.19	1E-12		1.15	[1.11-1.20]	Illumina [10909381] (imputed)	N
717	chr19	17389703	17389704	rs8170	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	19p13.11	MERIT40	rs8170-?	0.19	7E-21		1.17	[1.11-1.23] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
717	chr19	17389703	17389704	rs8170	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	19p13.11	NR	rs8170-A	0.19	2E-6		1.04	[1.02-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
717	chr19	17389703	17389704	rs8170	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	19p13.11	BABAM1	rs8170-A	0.19	5E-14		1.18	[1.13-1.23]	Illumina [up to 10962898] (imputed)	N
717	chr19	17389703	17389704	rs8170	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Breast Cancer in BRCA1 mutation carriers	1,426 European ancestry cases, 1,301 European ancestry controls	6,031 European ancestry cases, 5,933 European ancestry controls	19p13.11	intergenic	rs8170-G	0.48	4E-13		1.19	[1.14-1.25]	Illumina [2568349] (imputed)	N
717	chr19	17389703	17389704	rs8170	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	19p13.11	MERIT40	rs8170-A	0.191	9E-13		1.15	[1.11-1.20]	Illumina [NR]	N
717	chr19	17389703	17389704	rs8170	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	19p13.11	NR	rs8170-?	0.19	3E-14	(Serious invasive)	1.19	[1.14-1.25]	Illumina [2508744] (imputed)	N
717	chr19	17389703	17389704	rs8170	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	19p13.11	NR	rs8170-?	0.19	2E-7	(All invasive)	1.11	[1.07-1.15]	Illumina [2508744] (imputed)	N
717	chr19	17389703	17389704	rs8170	20852633	Bolton KL	2010-09-19	Nat Genet	Common variants at 19p13 are associated with susceptibility to ovarian cancer.	Ovarian cancer	1,768 European ancestry cases, 2,353 European ancestry controls	8,739 European ancestry cases, 10,831 European ancestry controls	19p13.11	C19orf62, MERIT40	rs8170-T	NR	4E-6	(Susceptibility)	1.12	[1.07-1.17]	Illumina [540573]	N
717	chr19	17389703	17389704	rs8170	20852631	Antoniou AC	2010-09-19	Nat Genet	A locus on 19p13 modifies risk of breast cancer in BRCA1 mutation carriers and is associated with hormone receptor-negative breast cancer in the general population.	Breast cancer	1,193 European ancestry cases, 1,190 European ancestry controls	2,974 European ancestry cases, 3,012 European ancestry controls	19p13.11	ANKLE1, C19orf62, ABHD8	rs8170-A	0.17	2E-9		1.26	[1.17-1.35]	Illumina [555616]	N
717	chr19	17390290	17390291	rs4808075	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	19p13.11	NR	rs4808075-C	0.295975	4E-24		1.1823713	[1.14473972413471-1.22123996090847]	Illumina [11595112] (imputed)	N
717	chr19	17390290	17390291	rs4808075	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	19p13.11	NR	rs4808075-C	0.295975	2E-17		1.1302502	[1.09887004937136-1.1625264094177]	Illumina [11595112] (imputed)	N
717	chr19	17390290	17390291	rs4808075	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	19p13.11	NR	rs4808075-C	0.295975	3E-26		1.1971419	[1.15799210345029-1.23761537074498]	Illumina [11595112] (imputed)	N
717	chr19	17390290	17390291	rs4808075	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	19p13.11	NR	rs4808075-C	0.295975	2E-19		1.1357577	[1.10479964302488-1.16758323338693]	Illumina [11595112] (imputed)	N
717	chr19	17390290	17390291	rs4808075	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	19p13.11	BABAM1	rs4808075-C	NR	2E-9	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
717	chr19	17390290	17390291	rs4808075	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	19p13.11	BABAM1	rs4808075-C	NR	4E-7		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
717	chr19	17391327	17391328	rs10419397	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.11	NR	rs10419397-A	0.2604	7E-23		0.0277552	[0.022-0.033] unit decrease	Affymetrix [3505788] (imputed)	N
717	chr19	17392628	17392629	rs35586766	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19p13.11	NR	rs35586766-A	0.1103	3E-16		0.0358754	[0.027-0.044] unit increase	Affymetrix [3505788] (imputed)	N
717	chr19	17392893	17392894	rs8100241	22976474	Siddiq A	2012-09-13	Hum Mol Genet	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	19p13.11	NR	rs8100241-G	NR	4E-8		1.14	[NR]	Illumina [2608509] (imputed)	N
717	chr19	17393924	17393925	rs56069439	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.11	NR	rs56069439-A	0.157748	2E-32		0.0274	[0.023-0.032] unit decrease	Affymetrix [23037915] (imputed)	N
717	chr19	17393924	17393925	rs56069439	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs56069439-A	0.2968	9E-9	(EA)	0.0387	[0.026-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
717	chr19	17393924	17393925	rs56069439	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19p13.11	ADHB8	rs56069439-?	0.3	8E-19		1.16	[1.13-1.20]	Illumina [10909381] (imputed)	N
717	chr19	17393924	17393925	rs56069439	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	19p13.11	ADHB8	rs56069439-?	0.3	1E-32		1.19	[1.14-1.24] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
717	chr19	17394123	17394124	rs2363956	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	19p13.11	NR	rs2363956-T	0.49	2E-6		1.03	[1.01-1.05]	Affymetrix, Illumina [~ 11600000] (imputed)	N
717	chr19	17394123	17394124	rs2363956	24325915	Purrington KS	2013-12-09	Carcinogenesis	Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer.	Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)	1,529 European ancestry cases, 3,399 European ancestry controls	2,148 European ancestry cases, 1,309 European ancestry controls	19p13.11	intergenic	rs2363956-C		2E-8		1.2195	[1.14-1.3]	Illumina [NR] (imputed)	N
717	chr19	17394123	17394124	rs2363956	20852633	Bolton KL	2010-09-19	Nat Genet	Common variants at 19p13 are associated with susceptibility to ovarian cancer.	Ovarian cancer	1,768 European ancestry cases, 2,353 European ancestry controls	8,739 European ancestry cases, 10,831 European ancestry controls	19p13.11	ANKLE1	rs2363956-T	NR	1E-7	(Susceptibility)	1.1	[1.06-1.15]	Illumina [540573]	N
717	chr19	17401403	17401404	rs67397200	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	intergenic	rs67397200-G	0.3	2E-8	(EA)	1.03	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
717	chr19	17401403	17401404	rs67397200	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19p13.11	ANKLE1	rs67397200-G	0.32	3E-37		1.17	[1.14-1.19]	Illumina [~ 11500000] (imputed)	N
717	chr19	17401403	17401404	rs67397200	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	19p13.11	ANKLE1	rs67397200-G	0.32	3E-17		1.18	[1.14-1.23]	Illumina [~ 11500000] (imputed)	N
717	chr19	17401858	17401859	rs61494113	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	19p13.11	NR	rs61494113-A	0.3	1E-7		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
717	chr19	17409670	17409671	rs10424198	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	2,102 European ancestry neonates	NA	19p13.11	ABHD8, ANKLE1, ANO8, BABAM1, DDA1, GTPBP3, MRPL34, NR2F6, PLVAP, USHBP1	rs10424198-T	NR	1E-14		0.262	[0.2-0.33] unit decrease	Illumina [7361275] (imputed)	N
717	chr19	17420288	17420289	rs2303745	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	19p13.11	DDA1	rs2303745-A	0.39	1E-6		1.07		Illumina [2100739] (imputed)	N
717	chr19	17422035	17422036	rs10423120	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.11	NR	rs10423120-G	0.185006	2E-10		0.015815	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
718	chr19	17432676	17432677	rs1079098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19p13.11	NR	rs1079098-A	NR	2E-9		0.0315	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
718	chr19	17434092	17434093	rs77331626	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	19p13.11	ANKRD55	rs77331626-G	0.71	7E-24		1.21	[1.17-1.26]	Affymetrix, Illumina [up to 9739303] (imputed)	N
718	chr19	17435650	17435651	rs143696449	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	19p13.11	ANO8	rs143696449-?	NR	5E-7				Illumina [83898]	N
718	chr19	17445207	17445208	rs117176661	34964454	Gentiluomo M	2021-11-23	Hum Mol Genet	Genome-wide association study of mitochondrial copy number.	Mitochondrial DNA copy number	6,836 European ancestry individuals, 295,150 individuals	NA	19p13.11	NR	rs117176661-T	NR	3E-9		0.034	[0.022-0.046] unit increase	Illumina [2775252] (imputed)	N
718	chr19	17455452	17455453	rs75452709	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.11	ANO8	rs75452709-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
718	chr19	17460596	17460597	rs8106115	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.11	NR	rs8106115-?	NR	5E-6		0.0079575	[0.0045-0.0114] unit decrease	Affymetrix [805426] (imputed)	N
718	chr19	17462093	17462094	rs7260450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs7260450-G	NR	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
718	chr19	17462093	17462094	rs7260450	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.11	PLVAP	rs7260450-T	0.3723	1E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix [18391927] (imputed)	N
718	chr19	17476152	17476153	rs142500391	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	19p13.11		rs142500391-?	NR	2E-14		0.124112	[0.091-0.157] unit decrease	NR [9800000] (imputed)	N
718	chr19	17476152	17476153	rs142500391	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	19p13.11		rs142500391-?	NR	6E-9		0.100138	[0.067-0.133] unit increase	NR [9800000] (imputed)	N
718	chr19	17476152	17476153	rs142500391	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	19p13.11		rs142500391-?	NR	2E-15		0.131067	[0.098-0.164] unit decrease	NR [9800000] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.00369799999999998	1E-10		0.11841313	[0.082-0.154] unit decrease	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.00369799999999998	1E-10		0.11902235	[0.083-0.155] unit decrease	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.003722	3E-9		0.107433625	[0.072-0.143] unit increase	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.00371699999999997	7E-11		0.11852424	[0.083-0.154] unit increase	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.00370899999999996	6E-12		0.12564144	[0.09-0.161] unit decrease	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	PLVAP	rs142500391-G	0.00370800000000004	7E-12		0.12540258	[0.09-0.161] unit decrease	Affymetrix [93095623] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs142500391-T	0.996311	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
718	chr19	17476152	17476153	rs142500391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.11	NR	rs142500391-T	0.99626	2E-13		0.118096	[0.087-0.15] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
718	chr19	17503002	17503003	rs149996714	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	19p13.11		rs149996714-T	NR	8E-6		0.89521		Affymetrix, Illumina [62056310] (imputed)	N
718	chr19	17512912	17512913	rs79565446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs79565446-?	NR	8E-17				NR [~ 8900000] (imputed)	N
718	chr19	17530195	17530196	rs563878902	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19p13.11	NR	rs563878902-T	NR	2E-24		0.1275	[0.1-0.15] unit increase	Affymetrix [9000000] (imputed)	N
718	chr19	17556792	17556793	rs147852856	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	19p13.11	TMEM221	rs147852856-G	0.03	2E-6		2.72	[1.80-4.10]	Illumina [7959153] (imputed)	N
719	chr19	17569133	17569134	rs144946269	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.11	CTD-2521M24.10	rs144946269-C	0.00907832737764216	9E-6	(F_Streptococcaceae_HB)	1.39789	[0.78-2.02] unit decrease	Illumina [7711310] (imputed)	N
719	chr19	17590280	17590281	rs11666579	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	19p13.11	SLC27A1	rs11666579-?	0.48	3E-6	(genotype x drug)	14.4	[NR] unit increase	Illumina [539391]	N
719	chr19	17612567	17612568	rs34329263	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p13.11	SLC27A1	rs34329263-T	0.0221658801378712	1E-6	(F_Porphyromonadaceae_RNT)	0.391521	[0.23-0.55] unit decrease	Illumina [7711310] (imputed)	N
719	chr19	17650607	17650608	rs57070010	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.11		rs57070010-?	NR	8E-9				NR [~ 8900000] (imputed)	N
719	chr19	17659513	17659514	rs113687477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs113687477-T	0.124951	4E-19				Affymetrix, Illumina [23472807] (imputed)	N
719	chr19	17659513	17659514	rs113687477	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.11	NR	rs113687477-T	0.112339	1E-21		0.027938	[0.022-0.034] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
719	chr19	17660607	17660608	rs2375636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	FAM129C	rs2375636-A	0.112278	3E-18		0.030452332	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
719	chr19	17669955	17669956	rs62119893	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs62119893-A	0.129467	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
719	chr19	17671381	17671382	rs73525772	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.11	COLGALT1	rs73525772-G	0.93046875	4E-6	(COLGALT1, 5638_23_3)	0.22229002	[0.13-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
719	chr19	17680565	17680566	rs62119898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	COLGALT1	rs62119898-A	0.114548	1E-10		0.022320384	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
720	chr19	17706895	17706896	rs11878930	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	19p13.11		rs11878930-?	NR	5E-9		1.089	[0.72-1.45] unit decrease	Affymetrix [NR] (imputed)	N
720	chr19	17730854	17730855	rs142647374	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	19p13.11		rs142647374-A	0.0097347	3E-6		0.15938	[0.093-0.226] unit increase	Affymetrix [15580782] (imputed)	N
720	chr19	17738356	17738357	rs765072720	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	19p13.11	UNC13A	rs765072720-C	0.0011	2E-6	(Icelandic)	0.82	NR SD units increase	Illumina [21568490] (imputed)	N
720	chr19	17742468	17742469	rs4239633	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	19p13.11	UNC13A	rs4239633-?	0.69	5E-7		1.25	[1.14-1.41]	Affymetrix, Illumina [10973920] (imputed)	N
720	chr19	17742468	17742469	rs4239633	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	19p13.11	UNC13A	rs4239633-?	0.68	6E-7	(EA)	1.2658228	[1.12-1.43]	Affymetrix, Illumina [10973920] (imputed)	N
720	chr19	17752688	17752689	rs12608932	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs12608932-C	NR	3E-25		0.12	[0.1-0.14] unit increase	Illumina [10461755] (imputed)	N
720	chr19	17752688	17752689	rs12608932	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	19p13.11		rs12608932-C	0.347	9E-25		0.125	[0.1-0.15] unit increase	Illumina [10461755] (imputed)	N
720	chr19	17752688	17752689	rs12608932	28931804	Benyamin B	2017-09-20	Nat Commun	Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	1,234 Chinese ancestry cases, 2,850 Chinese ancestry controls, 12,577 European ancestry cases, 23,475 European ancestry controls	576 cases, 683 controls	19p13.11	UNC13A	rs12608932-?	NR	3E-10		0.0215	[0.015-0.028] unit decrease	Illumina [at least 6613544] (imputed)	N
720	chr19	17752688	17752689	rs12608932	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	19p13.11	UNC13A	rs12608932-?	0.357	2E-8		1.098	[NR] (NL3 cohort)	Illumina [8697640] (imputed)	N
720	chr19	17752688	17752689	rs12608932	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Frontotemporal dementia	435 European ancestry cases, 1,414 European ancestry controls	NA	19p13.11	UNC13A	rs12608932-C	0.35	7E-6		1.46	[NR]	Illumina [~ 1400000] (imputed)	N
720	chr19	17752688	17752689	rs12608932	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	19p13.11	UNC13A	rs12608932-C	0.35	2E-8		1.18	[NR]	Illumina [~ 1400000] (imputed)	N
720	chr19	17752688	17752689	rs12608932	24256812	Fogh I	2013-11-20	Hum Mol Genet	A genome-wide association meta-analysis identifies a novel locus at 17q11.2 associated with sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	6,100 European ancestry cases, 7,125 European ancestry controls	2,074 European ancestry cases, 2,556 European ancestry controls	19p13.11	UNC13A	rs12608932-?	0.335	6E-6				Illumina [~ 7000000] (imputed)	N
720	chr19	17752688	17752689	rs12608932	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	19p13.11	UNC13A	rs12608932-?	NR	4E-7		1.21	[1.13-1.31]	Illumina [254145]	N
720	chr19	17752688	17752689	rs12608932	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	19p13.11	UNC13A	rs12608932-C	0.34	5E-8	(Meta)	1.37	[1.21-1.56]	Illumina [254145]	N
720	chr19	17752688	17752689	rs12608932	19734901	van Es MA	2009-09-06	Nat Genet	Genome-wide association study identifies 19p13.3 (UNC13A) and 9p21.2 as susceptibility loci for sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	2,323 European ancestry cases, 9,013 European ancestry controls	2,532 European ancestry cases, 5,940 European ancestry controls	19p13.11	UNC13A	rs12608932-?	0.34	3E-14		1.25	[NR]	Illumina [292768]	N
720	chr19	17753238	17753239	rs12973192	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	19p13.11	UNC13A	rs12973192-?	0.3195	4E-15	(EA)	1.1235955	[1.1-1.16]	Illumina [10031630] (imputed)	N
720	chr19	17762889	17762890	rs10416963	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.11	UNC13A	rs10416963-G	0.487	8E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
721	chr19	17833855	17833856	rs12979186	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.11	NR	rs12979186-T	0.49484	1E-11		0.012568	[0.0089-0.0162] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
721	chr19	17842858	17842859	rs79237650	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.11	MAP1S, CTD-3149D2.4	rs79237650-A	0.9972	1E-6		0.4518	[0.27-0.64] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
721	chr19	17844893	17844894	rs7253117	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs7253117-G	0.398243	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
721	chr19	17844941	17844942	rs7251815	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	19p13.11	MAP1S	rs7251815-?	NR	4E-15		0.0531082	[0.04-0.066] unit increase	Illumina [4804024] (imputed)	N
721	chr19	17844941	17844942	rs7251815	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	19p13.11	MAP1S	rs7251815-T	0.2162	1E-13		0.0511	[0.038-0.065] unit increase	Affymetrix [at least 7947838] (imputed)	N
721	chr19	17846843	17846844	rs112009435	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.11	MAP1S	rs112009435-A	0.177	6E-13		0.06	[0.044-0.076] unit increase	Affymetrix [7947838] (imputed)	N
721	chr19	17855762	17855763	rs73015714	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19p13.11	FCHO1	rs73015714-C	0.7954	8E-14		0.0593	[0.044-0.075] unit decrease	NR [8041861] (imputed)	N
721	chr19	17858348	17858349	rs28736584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	FCHO1	rs28736584-G	0.4643	2E-9		0.0134531325	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
721	chr19	17858359	17858360	rs28403253	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.11	Intergenic	rs28403253-A	0.4825	6E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
721	chr19	17858563	17858564	rs12983897	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19p13.11	FCHO1	rs12983897-G	0.466759	4E-12		1.06	[1.04-1.07]	NR [8126035] (imputed)	N
721	chr19	17858563	17858564	rs12983897	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	19p13.11	FCHO1	rs12983897-G	0.481922	2E-8		1.06	[1.04-1.09]	NR [10903881] (imputed)	N
721	chr19	17858563	17858564	rs12983897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.11	FCHO1	rs12983897-G	0.481882	3E-12		0.015618705	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
721	chr19	17859369	17859370	rs12151113	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.11	Intergenic	rs12151113-T	0.5175	3E-8	(MTAG)	0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
721	chr19	17862130	17862131	rs12979056	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19p13.11	FCHO1	rs12979056-G	0.542149	3E-43		0.00708384	[0.0061-0.0081] unit decrease	Affymetrix [13995440] (imputed)	N
721	chr19	17862924	17862925	rs4808683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.11	NR	rs4808683-G	0.458281	8E-12		0.012835	[0.0092-0.0165] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
721	chr19	17862924	17862925	rs4808683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.11	NR	rs4808683-G	0.458189	4E-10		0.01228	[0.0084-0.0161] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
721	chr19	17902333	17902334	rs265548	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19p13.11	B3GNT3	rs265548-C	0.26	1E-13	(CA19-9)	0.072	[0.029-0.115] U/ml decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr19	17905906	17905907	rs34262244	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 19.9 levels	9,945 Icelandic ancestry individuals	NA	19p13.11	B3GNT3	rs34262244-A	0.285	3E-13		0.13	[0.17-0.10] unit decrease	Illumina [NR] (imputed)	N
721	chr19	17918490	17918491	rs75226258	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	19p13.11	NR	rs75226258-?	NR	3E-6		0.0985	[0.057-0.14] unit decrease	Illumina [at least 560000] (imputed)	N
722	chr19	17990305	17990306	rs149026664	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	19p13.11	SLC5A5	rs149026664-?	NR	7E-6				Affymetrix [394222]	N
722	chr19	18043972	18043973	rs59450344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	CCDC124	rs59450344-G	0.489087	1E-12		0.01593172	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr19	18043972	18043973	rs59450344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	CCDC124	rs59450344-G	0.489089	6E-13		0.01612832	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr19	18052312	18052312	rs35827475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	CCDC124	rs35827475-CTT	0.345064	4E-11		0.0154639045	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr19	18052312	18052312	rs35827475	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	CCDC124	rs35827475-CTT	0.34506	3E-11		0.015655966	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr19	18053339	18053340	rs4808105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19p13.11	CCDC124	rs4808105-C	0.674181	1E-14		0.018647633	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr19	18054467	18054468	rs141057294	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	19p13.11		rs141057294-?	NR	6E-9		0.270161	[0.18-0.36] unit increase	NR [9800000] (imputed)	N
723	chr19	18095768	18095769	rs2278992	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	19p13.11	KCNN1	rs2278992-T	0.824	4E-6	(Hispanic/Latino+AfricanAmerican)	1.69	[1.35-2.13]	Affymetrix [~ 8700000] (imputed)	N
723	chr19	18110573	18110574	rs10411508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11	KCNN1	rs10411508-A	0.393518	2E-15		0.018324468	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
723	chr19	18110573	18110574	rs10411508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs10411508-?	NR	7E-11				NR [~ 8900000] (imputed)	N
723	chr19	18113999	18114000	rs12981683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19p13.11		rs12981683-T	NR	3E-12		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
723	chr19	18113999	18114000	rs12981683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11	ARRDC2	rs12981683-T	0.219749	2E-14		0.020579958	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr19	18113999	18114000	rs12981683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19p13.11	ARRDC2	rs12981683-T	0.2193	2E-10		0.02828466	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
723	chr19	18116143	18116144	rs35928002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	ARRDC2	rs35928002-G	0.306367	3E-37		0.031624593	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr19	18116143	18116144	rs35928002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	ARRDC2	rs35928002-G	0.306362	1E-43		0.03425297	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr19	18116143	18116144	rs35928002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.11	ARRDC2	rs35928002-G	0.307	1E-14		0.03055804	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
723	chr19	18116143	18116144	rs35928002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.11	ARRDC2	rs35928002-G	0.307	5E-20		0.03652105	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
723	chr19	18116143	18116144	rs35928002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.11	ARRDC2	rs35928002-G	0.3069	3E-14		0.03037004	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
723	chr19	18117645	18117646	rs4808737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs4808737-?	NR	1E-20				NR [~ 8900000] (imputed)	N
723	chr19	18121966	18121967	rs8104679	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.11	ARRDC2	rs8104679-T	0.779474	8E-13		0.0161005	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
723	chr19	18124754	18124755	rs10426256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	ARRDC2	rs10426256-G	0.221917	1E-14		0.020557716	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
723	chr19	18124754	18124755	rs10426256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	ARRDC2	rs10426256-G	0.221905	9E-11		0.017213197	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr19	18132539	18132540	rs12984174	23541324	Li X	2013-03-27	J Allergy Clin Immunol	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		19p13.11	IL12RB1	rs12984174-T	0.87	9E-6	(ppFVC)	0.26	[NR] unit decrease	Illumina [369771]	N
723	chr19	18141122	18141123	rs91710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs91710-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
723	chr19	18141995	18141996	rs388159	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.11	CTB-52I2.4	rs388159-T	NR	4E-8		0.0205746	[0.013-0.028] unit decrease	Affymetrix [321016] (imputed)	N
723	chr19	18146067	18146068	rs59813731	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.11	ARRDC2	rs59813731-C	0.805893	3E-23		0.0235319	[0.019-0.028] unit decrease	NR [13737936] (imputed)	N
723	chr19	18146067	18146068	rs59813731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.11		rs59813731-?	NR	3E-23				NR [~ 8900000] (imputed)	N
723	chr19	18146384	18146385	rs384478	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.11		rs384478-?	NR	3E-14		0.0178317	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
723	chr19	18155753	18155753	rs372073489	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.11		rs372073489-?	NR	3E-15		0.0196074	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
723	chr19	18157742	18157742	rs10632399	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.11		rs10632399-?	NR	6E-24		0.0235223	[0.019-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
723	chr19	18166497	18166498	rs62121122	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.11	NR	rs62121122-G	0.859133	9E-10		0.0177434	[0.012-0.023] unit decrease	NR [NR]	N
723	chr19	18172840	18172841	rs17878533	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	19p13.11		rs17878533-A	0.651	5E-7		1.2	[1.12-1.28]	Illumina [9962324] (imputed)	N
723	chr19	18189567	18189568	rs376008	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19p13.11	IL12RB1	rs376008-T	0.3350101	6E-69	(Interleukin-12 receptor subunit beta-1)	0.7569	[0.68-0.83] unit decrease	Affymetrix [509946]	N
723	chr19	18190343	18190344	rs8109496	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	19p13.11	IL12RB1	rs8109496-?	0.8	4E-11		1.3026713		Illumina [252970]	N
723	chr19	18191440	18191441	rs2305742	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19p13.11		rs2305742-C	0.788474	5E-28		1.0586537	[1.05-1.07]	Affymetrix, Illumina [9851866] (imputed)	N
723	chr19	18193190	18193191	rs2305743	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	19p13.11	IL12RB1	rs2305743-?	0.8	5E-10		1.2048193		Illumina [4723365]	N
723	chr19	18201756	18201757	rs7250425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.11	NR	rs7250425-T	NR	8E-13		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
723	chr19	18201756	18201757	rs7250425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs7250425-T	NR	5E-12		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
723	chr19	18201756	18201757	rs7250425	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs7250425-T	NR	3E-13		0.0173	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
723	chr19	18203587	18203587	rs11450736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	IL12RB1	rs11450736-TA	NR	4E-8		0.0191879	[0.012-0.026] unit increase	Affymetrix [321114] (imputed)	N
723	chr19	18207396	18207397	rs55714539	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	19p13.11	MAST3	rs55714539-?	NR	2E-8		0.0455	NR % increase	Affymetrix [9390170] (imputed)	N
723	chr19	18207396	18207397	rs55714539	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to wear a physical activity monitor	96,035 European ancestry cases, 119,092 European ancestry controls	NA	19p13.11	NR	rs55714539-A	0.66	1E-9		1.08	[1.05, 1.11]	Affymetrix [39302896] (imputed)	N
723	chr19	18207642	18207642	rs375909657	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.11	IL12RB1	rs375909657-TA	NR	4E-8		0.0067033	[0.0043-0.0091] unit decrease	NR [16367095] (imputed)	N
723	chr19	18215246	18215247	rs273504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19p13.11	NA	rs273504-A	0.577	4E-19		0.0156	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
723	chr19	18216346	18216346	rs35808767	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.11	MAST3	rs35808767-TA	NR	2E-8		0.0071442	[0.0046-0.0096] unit decrease	NR [16367095] (imputed)	N
723	chr19	18217146	18217147	rs273505	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.11	MAST3	rs273505-T	0.577896	3E-13		0.0101333	[0.0074-0.0129] unit decrease	Affymetrix [12370749]	N
723	chr19	18217146	18217147	rs273505	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs273505-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
723	chr19	18217146	18217147	rs273505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.11		rs273505-?	NR	1E-18				NR [~ 8900000] (imputed)	N
723	chr19	18217146	18217147	rs273505	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.11	NA	rs273505-T	0.5783	3E-19		0.0173	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
723	chr19	18217146	18217147	rs273505	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19p13.11	NA	rs273505-T	0.5783	3E-19		0.0173	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
723	chr19	18218819	18218820	rs66464318	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs66464318-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
724	chr19	18219173	18219174	rs35579185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.11		rs35579185-G	NR	2E-23		0.0243	[0.02-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
724	chr19	18221212	18221213	rs60146811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.11		rs60146811-?	NR	5E-13				NR [~ 8900000] (imputed)	N
724	chr19	18221963	18221964	rs273507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.11		rs273507-A	0.70599	8E-10		0.0280642	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
724	chr19	18221963	18221964	rs273507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	MAST3	rs273507-C	NR	7E-11		0.0202656	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18221963	18221964	rs273507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	MAST3	rs273507-C	NR	6E-11		0.0203047	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18221963	18221964	rs273507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	MAST3	rs273507-C	NR	2E-9		0.0189549	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
724	chr19	18221963	18221964	rs273507	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.11	MAST3	rs273507-C	0.29	9E-23		9.82	z-score increase	Affymetrix [4312306] (imputed)	N
724	chr19	18222055	18222095	rs762101480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	MAST3	rs762101480-TC	NR	5E-11		0.0206265	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
724	chr19	18223349	18223350	rs273510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19p13.11		rs273510-G	NR	2E-34		0.0298	[0.025-0.035] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
724	chr19	18223349	18223350	rs273510	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	19p13.11	MAST3	rs273510-A	0.708	4E-9		0.034	[0.022-0.046] unit increase	Affymetrix, Illumina [NR] (imputed)	N
724	chr19	18224728	18224729	rs273512	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19p13.11	MAST3	rs273512-C	NR	7E-14		0.00954694	[0.007-0.0121] unit increase	Affymetrix [10061374] (imputed)	N
724	chr19	18224728	18224729	rs273512	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	19p13.11	MAST3	rs273512-T	0.4034	4E-9		0.014144371	[0.0094-0.0189] unit decrease	Affymetrix [11515109] (imputed)	N
724	chr19	18225002	18225002	rs111288118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19p13.11	MAST3	rs111288118-CTT	NR	3E-9		0.0218932	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
724	chr19	18225002	18225002	rs111288118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.11	MAST3	rs111288118-CTT	NR	1E-8		0.0210722	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
724	chr19	18225002	18225002	rs111288118	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.11	NR	rs111288118-C	0.75505	1E-14		0.0107851	[0.0079-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
724	chr19	18225002	18225002	rs111288118	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19p13.11	NR	rs111288118-C	0.75505	7E-16		0.0131219	[0.0098-0.0164] unit increase	Affymetrix [16585866] (imputed)	N
724	chr19	18226605	18226606	rs62123566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	MAST3	rs62123566-A	NR	4E-8		0.0227345	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
724	chr19	18226605	18226606	rs62123566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	MAST3	rs62123566-A	NR	1E-8		0.0236633	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
724	chr19	18227356	18227357	rs80048023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.11		rs80048023-A	NR	3E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
724	chr19	18230273	18230274	rs10401175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.11		rs10401175-?	NR	3E-9				NR [~ 8900000] (imputed)	N
724	chr19	18234143	18234144	rs370052741	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	19p13.11	MAST3	rs370052741-A	0.0017	5E-6		0.8296	[0.47-1.19] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
724	chr19	18234587	18234588	rs11666281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	19p13.11		rs11666281-C	0.745751	7E-16		0.0360687	[0.027-0.045] unit increase	NR [11722792] (imputed)	N
724	chr19	18235870	18235871	rs56338130	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19p13.11	MAST3	rs56338130-T	0.2235	4E-9		0.0225	[0.015-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
724	chr19	18235881	18235882	rs1811241	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.11		rs1811241-A	0.317918	2E-8		0.0248768	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
724	chr19	18235881	18235882	rs1811241	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	19p13.11		rs1811241-?	NR	5E-8				NR [5054572] (imputed)	N
724	chr19	18237039	18237039	rs777616140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	MAST3	rs777616140-GA	0.543202	2E-9		0.014081682	[0.0095-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
724	chr19	18237049	18237050	rs72999449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	MAST3	rs72999449-T	0.253078	4E-21		0.024076603	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr19	18241897	18241898	rs11666906	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19p13.11	MAST3	rs11666906-A	0.744157	4E-28		0.00479824	[0.0039-0.0057] unit decrease	Affymetrix [13995440] (imputed)	N
724	chr19	18244689	18244690	rs885683	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.11		rs885683-G	0.743228	1E-9		0.0286749	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
724	chr19	18244689	18244690	rs885683	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs885683-?	NR	9E-20				Affymetrix [~ 8270000] (imputed)	N
724	chr19	18257749	18257750	rs2072490	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19p13.11	NR	rs2072490-T	NR	6E-10		6.192	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
724	chr19	18276122	18276123	rs62123615	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.11	NR	rs62123615-?	NR	2E-6		4.794	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
724	chr19	18279815	18279816	rs3746187	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.11		rs3746187-A	0.600732	3E-8		0.0235054	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
724	chr19	18279815	18279816	rs3746187	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	19p13.11	NR	rs3746187-A	0.6	2E-10		1.03	[1.02, 1.04]	Affymetrix [39302896] (imputed)	N
724	chr19	18279815	18279816	rs3746187	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.11	PIK3R2	rs3746187-G	0.4	1E-10		0.0071625	[0.005-0.0093] unit decrease	NR [16367095] (imputed)	N
724	chr19	18282402	18282402	rs554853027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.11	PIK3R2	rs554853027-GA	0.308642	4E-12		0.017140586	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr19	18282402	18282402	rs554853027	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.11	PIK3R2	rs554853027-GA	0.308618	4E-13		0.017910808	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr19	18282402	18282402	rs554853027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.11	NR	rs554853027-I	0.308814	4E-12		0.016373	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
724	chr19	18282894	18282895	rs887945	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin L1 levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs887945-A	0.76	6E-62		0.1655	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
724	chr19	18282939	18282940	rs11668950	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.11	PIK3R2	rs11668950-A	NR	3E-8		0.0067657	[0.0044-0.0091] unit decrease	NR [16367095] (imputed)	N
724	chr19	18285943	18285944	rs11554159	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.11		rs11554159-A	0.29825	3E-36		0.3745	[0.32-0.43] unit decrease	Illumina [17914520] (imputed)	N
724	chr19	18285943	18285944	rs11554159	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on CD14+ monocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	19p13.11		rs11554159-A	0.29949	2E-25		0.2988	[0.24-0.35] unit decrease	Illumina [18030638] (imputed)	N
724	chr19	18285943	18285944	rs11554159	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	19p13.11	IFI30	rs11554159-A	0.2592	4E-11		0.0221	[0.015-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18285943	18285944	rs11554159	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	19p13.11	IFI30	rs11554159-A	0.2655	2E-11		0.0234	[0.017-0.03] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18285943	18285944	rs11554159	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	19p13.11	IFI30	rs11554159-A	0.2571	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18285943	18285944	rs11554159	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	19p13.11	IFI30	rs11554159-A	0.2655	6E-10		0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18285943	18285944	rs11554159	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19p13.11	IFI30	rs11554159-G	0.74	2E-24		1.15		Illumina [161311]	N
724	chr19	18286545	18286546	rs200373	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	19p13.11	NR	rs200373-T	0.51	5E-9		0.52	[0.34-0.7] unit increase	Affymetrix [39302896] (imputed)	N
724	chr19	18286545	18286546	rs200373	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19p13.11	intergenic	rs200373-T	0.48	2E-14		0.14	unit decrease	Illumina [5270624] (imputed)	N
724	chr19	18288068	18288069	rs7125	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19p13.11	PIK3R2, IFI30	rs7125-G	NR	2E-9		0.0064745	[0.0044-0.0086] unit decrease	NR [16367095] (imputed)	N
724	chr19	18296866	18296867	rs10410017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.11		rs10410017-T	NR	2E-14		0.0174	[0.013-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
724	chr19	18296866	18296867	rs10410017	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19p13.11	IFI30, MPV17L2	rs10410017-C	0.64	1E-13		7.44	z-score increase	Affymetrix [4311822] (imputed)	N
724	chr19	18299170	18299171	rs62120366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	MPV17L2	rs62120366-A	NR	1E-10		0.0190514	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18299170	18299171	rs62120366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	MPV17L2	rs62120366-A	NR	4E-11		0.0194914	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18299170	18299171	rs62120366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	MPV17L2	rs62120366-A	NR	9E-12		0.0202647	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
724	chr19	18299170	18299171	rs62120366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	MPV17L2	rs62120366-A	NR	2E-9		0.0178964	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
724	chr19	18301978	18301979	rs4808760	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.11	IFI30	rs4808760-C	NR	6E-25		1.1198208	NR	Affymetrix, Illumina [8278136] (imputed)	N
724	chr19	18304699	18304700	rs874628	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	19p13.11	MPV17L2	rs874628-G	0.273	2E-11		0.0221	[0.016-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18304699	18304700	rs874628	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	19p13.11	MPV17L2	rs874628-G	0.282	2E-11		0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18304699	18304700	rs874628	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	19p13.11	MPV17L2	rs874628-G	0.2707	1E-10		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18304699	18304700	rs874628	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	19p13.11	MPV17L2	rs874628-G	0.2818	3E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
724	chr19	18304699	18304700	rs874628	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	19p13.11	NR	rs874628-G	NR	6E-7		0.010319133	[0.0063-0.0144] unit increase	Illumina [242289]	N
724	chr19	18304699	18304700	rs874628	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19p13.11	MPV17L2	rs874628-A	NR	1E-8		1.11	[1.09-1.12]	Illumina [465434]	N
724	chr19	18314265	18314266	rs73001430	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	19p13.11	RAB3A	rs73001430-C	0.959	4E-6	(EA)	0.264	[0.15-0.38] unit increase	Illumina [NR] (imputed)	N
724	chr19	18325946	18325947	rs7246274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	AC068499.10, PDE4C	rs7246274-T	NR	7E-10		0.0185535	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
724	chr19	18325946	18325947	rs7246274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	AC068499.10, PDE4C	rs7246274-T	NR	2E-10		0.0193037	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	9E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	2E-11		0.0176	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	5E-18		0.0238	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	1E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	1E-13		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	1E-25		0.0275	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	5E-34		0.032	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	2E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.11	NR	rs4808762-C	NR	6E-20		0.024	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
724	chr19	18326221	18326222	rs4808762	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19p13.11	PDE4C	rs4808762-T	0.7199	1E-8		0.024229	[0.016-0.033] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
724	chr19	18326221	18326222	rs4808762	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19p13.11	NR	rs4808762-C	0.2896	4E-26		0.028893212	[0.024-0.034] unit increase	Affymetrix [10549349] (imputed)	N
724	chr19	18334442	18334443	rs4808765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.11		rs4808765-T	NR	2E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
724	chr19	18334442	18334443	rs4808765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19p13.11		rs4808765-T	NR	3E-11		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
724	chr19	18335714	18335715	rs4808766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs4808766-C	NR	1E-9		0.019494	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
724	chr19	18335714	18335715	rs4808766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19p13.11		rs4808766-?	NR	4E-8				NR [~ 8900000] (imputed)	N
724	chr19	18338708	18338709	rs62120394	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Abdominal subcutaneous adipose tissue volume	32,860 European ancestry individuals	NA	19p13.11	PDE4C	rs62120394-?	NR	2E-8		0.045	NR L increase	Affymetrix [9390170] (imputed)	N
724	chr19	18338708	18338709	rs62120394	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.11	PDE4C	rs62120394-G	0.708176	6E-12		0.0157592	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
724	chr19	18338708	18338709	rs62120394	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.11	PDE4C	rs62120394-G	0.70813	4E-10		0.0141351	[0.0097-0.0186] unit decrease	Affymetrix [NR] (imputed)	N
724	chr19	18340909	18340910	rs8112975	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19p13.11	PDE4C	rs8112975-?	NR	6E-12		0.0195	[0.015-0.024] unit increase	Affymetrix [5701386] (imputed)	N
724	chr19	18341755	18341756	rs11670370	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs11670370-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
724	chr19	18346002	18346003	rs62120396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19p13.11	PDE4C	rs62120396-T	NR	3E-9		0.0207733	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
724	chr19	18346002	18346003	rs62120396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.11	PDE4C	rs62120396-T	NR	9E-9		0.0201815	[0.013-0.027] unit increase	Affymetrix [127266] (imputed)	N
724	chr19	18346227	18346228	rs12460047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12460047-A	NR	7E-13		0.0228021	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18346227	18346228	rs12460047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12460047-A	NR	1E-12		0.0226473	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
724	chr19	18346227	18346228	rs12460047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12460047-A	NR	2E-12		0.0226304	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
724	chr19	18346227	18346228	rs12460047	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12460047-A	NR	8E-12		0.02191	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
725	chr19	18358782	18358783	rs4808122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs4808122-A	NR	1E-11		0.0201164	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
725	chr19	18359523	18359524	rs12461581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12461581-A	NR	2E-11		0.019354	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18359523	18359524	rs12461581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12461581-A	NR	6E-12		0.0198576	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18359523	18359524	rs12461581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs12461581-A	NR	1E-10		0.0187913	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
725	chr19	18360538	18360539	rs4808773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	PDE4C	rs4808773-C	NR	1E-8		0.0165367	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18360538	18360539	rs4808773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	PDE4C	rs4808773-C	NR	2E-8		0.016391	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18360538	18360539	rs4808773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs4808773-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18369119	18369120	rs2891654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	KIAA1683	rs2891654-A	NR	4E-11		0.0192235	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
725	chr19	18382602	18382603	rs12460547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs12460547-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18383505	18383506	rs11666808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	19p13.11		rs11666808-C	NR	2E-16		0.0748	[0.057-0.093] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
725	chr19	18383505	18383506	rs11666808	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Visceral adipose tissue volume	32,860 European ancestry individuals	NA	19p13.11	IQCN	rs11666808-?	NR	4E-8		0.0377	NR L decrease	Affymetrix [9390170] (imputed)	N
725	chr19	18383505	18383506	rs11666808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	KIAA1683	rs11666808-T	NR	4E-23		0.0289723	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18383505	18383506	rs11666808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	KIAA1683	rs11666808-T	NR	4E-23		0.029005	[0.023-0.035] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18383505	18383506	rs11666808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	19p13.11		rs11666808-T	0.37	3E-9		0.011	mmol/L increase	NR [NR] (imputed)	N
725	chr19	18383505	18383506	rs11666808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	19p13.11		rs11666808-T	0.37	4E-18		0.017	nmol/L decrease	NR [NR] (imputed)	N
725	chr19	18383505	18383506	rs11666808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	19p13.11		rs11666808-T	0.37	9E-24				NR [NR] (imputed)	N
725	chr19	18383505	18383506	rs11666808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	19p13.11		rs11666808-T	0.37	6E-27		0.017	% increase	NR [NR] (imputed)	N
725	chr19	18383505	18383506	rs11666808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	19p13.11		rs11666808-T	0.37	2E-9		0.012	U/L increase	NR [NR] (imputed)	N
725	chr19	18383505	18383506	rs11666808	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs11666808-?	NR	2E-42				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18383505	18383506	rs11666808	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	19p13.11	KIAA1683	rs11666808-T	0.373327	9E-15		0.07337282	[0.055-0.092] unit decrease	Affymetrix [7288503] (imputed)	N
725	chr19	18383505	18383506	rs11666808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19p13.11		rs11666808-?	NR	4E-13				NR [~ 8900000] (imputed)	N
725	chr19	18383505	18383506	rs11666808	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.11	NR	rs11666808-?	NR	2E-15		0.17296	[0.13-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
725	chr19	18383505	18383506	rs11666808	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19p13.11	NR	rs11666808-?	NR	1E-13	(male)	0.19888	[0.15-0.25] unit decrease	Affymetrix [7794483] (imputed)	N
725	chr19	18383505	18383506	rs11666808	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19p13.11	NR	rs11666808-T	0.3702	1E-44		0.0286	[0.025-0.033] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18384120	18384121	rs55817508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19p13.11		rs55817508-T	NR	3E-10		0.0766	[0.053-0.1] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
725	chr19	18384949	18384950	rs1075403	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	19p13.11	JUND, KIAA1683	rs1075403-G	0.6992	2E-10		6.399	NR z score decrease	Illumina [26237160] (imputed)	N
725	chr19	18386366	18386367	rs12983444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19p13.11		rs12983444-G	0.757078	5E-8		0.0279204	[0.018-0.038] unit increase	Illumina [13471440] (imputed)	N
725	chr19	18386633	18386634	rs2384991	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.11	JUND	rs2384991-C	NR	5E-8		1.11	[1.07-1.15]	Illumina [NR] (imputed)	N
725	chr19	18386813	18386813	rs6146484	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	19p13.11	NR	rs6146484-CTCCAGGGAGTATGCA	0.628665	9E-10		0.0419271	[0.028-0.056] unit increase	Affymetrix [17914406] (imputed)	N
725	chr19	18388382	18388383	rs4531856	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.11	NR	rs4531856-T	0.6408	2E-43		0.0259	[0.022-0.03] unit decrease	NR [~ 27400000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	19p13.11	NR	rs12608504-A	0.36	2E-46		0.026	[0.022-0.03] unit increase	Affymetrix [2446094] (imputed)	N
725	chr19	18389134	18389135	rs12608504	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	19p13.11	NR	rs12608504-A	0.36	5E-8				Affymetrix [2446094] (imputed)	N
725	chr19	18389134	18389135	rs12608504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	19p13.11	NR	rs12608504-A	0.3596	3E-47		0.0258	[0.022-0.029] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.11	NA	rs12608504-A	0.3593	5E-46		0.0251	[0.022-0.029] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	19p13.11	NR	rs12608504-A	0.3593	5E-46		0.0251	[0.022-0.029] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.362	7E-9	(AA, men)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3583	5E-7	(men)	0.0246	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.362	2E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3583	2E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.362	3E-11	(AA, men)	0.027	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3583	5E-9	(men)	0.0318	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3583	3E-9		0.0227	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3589	6E-8		0.0231	[0.015-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3589	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	JUND	rs12608504-A	0.3589	3E-8		0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	19p13.11	NR	rs12608504-A	0.357006954395047	5E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	19p13.11	NR	rs12608504-A	0.357006954395047	1E-8		0.019687975	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.355	9E-10	(EA)	0.0219	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.3547	5E-10		0.0218	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.354	1E-7	(EA, men)	0.0275	[0.017-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.3532	3E-7	(men)	0.0258	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.3569	7E-6	(EA, men)	0.0224	[0.013-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18389134	18389135	rs12608504	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19p13.11	JUND	rs12608504-A	0.3569	1E-8	(EA)	0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
725	chr19	18391170	18391171	rs7249	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs7249-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18391170	18391171	rs7249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.11		rs7249-?	NR	5E-18				NR [~ 8900000] (imputed)	N
725	chr19	18391170	18391171	rs7249	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19p13.11	JUND	rs7249-T	0.3669	2E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
725	chr19	18392872	18392873	rs7247222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19p13.11	MIR3188	rs7247222-C	NR	1E-12		0.0231114	[0.017-0.029] unit increase	Affymetrix [127266] (imputed)	N
725	chr19	18394078	18394079	rs41481544	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	MIR3188	rs41481544-A	NR	2E-11		0.0216604	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
725	chr19	18394549	18394549	rs10686842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19p13.11		rs10686842-TAAA	NR	9E-37		0.0279	[0.024-0.032] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
725	chr19	18394549	18394549	rs10686842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	MIR3188	rs10686842-T	NR	1E-22		0.029002	[0.023-0.035] unit increase	Affymetrix [321114] (imputed)	N
725	chr19	18394549	18394549	rs10686842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	MIR3188	rs10686842-T	NR	2E-25		0.0309717	[0.025-0.037] unit increase	Affymetrix [321169] (imputed)	N
725	chr19	18394549	18394549	rs10686842	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.11	JUND	rs10686842-T	0.3676	7E-24		0.0199	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
725	chr19	18394549	18394549	rs10686842	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	19p13.11	JUND	rs10686842-TAAA	0.634	4E-17		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
725	chr19	18394549	18394549	rs10686842	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.11	NR	rs10686842-TAAA	0.632919	3E-25		0.013917	[0.011-0.017] unit increase	Affymetrix [16578495] (imputed)	N
725	chr19	18394549	18394549	rs10686842	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19p13.11	NR	rs10686842-TAAA	0.6320049999999999	1E-22		0.0282924	[0.023-0.034] unit increase	Affymetrix [16580851] (imputed)	N
725	chr19	18394549	18394549	rs10686842	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.11	NR	rs10686842-TAAA	0.632802	1E-16		0.00678218	[0.0051-0.0085] unit increase	Affymetrix [16582909] (imputed)	N
725	chr19	18394549	18394549	rs10686842	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.11	NR	rs10686842-TAAA	0.632802	2E-18		0.00820495	[0.0063-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
725	chr19	18394760	18394761	rs7256111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19p13.11	RPL39P38	rs7256111-A	NR	4E-13		0.0235737	[0.017-0.03] unit increase	Affymetrix [323858] (imputed)	N
725	chr19	18394760	18394761	rs7256111	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs7256111-?	NR	5E-35				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18394760	18394761	rs7256111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.11		rs7256111-?	NR	2E-37				NR [~ 8900000] (imputed)	N
725	chr19	18395536	18395537	rs4254438	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.11		rs4254438-T	NR	2E-11		0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
725	chr19	18395536	18395537	rs4254438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs4254438-T	0.364605	8E-20				Affymetrix, Illumina [19872809] (imputed)	N
725	chr19	18395536	18395537	rs4254438	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.11	NR	rs4254438-T	0.365539	6E-21		0.019394	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
725	chr19	18395755	18395756	rs4378729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs4378729-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18396677	18396677	rs541066455	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	19p13.11	MIR3188, LSM4	rs541066455-C	0.4543	5E-8		0.077	[0.048-0.106] unit decrease	Affymetrix [~ 11900000] (imputed)	N
725	chr19	18397787	18397788	rs12463315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12463315-A	NR	4E-13		0.0211687	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18397787	18397788	rs12463315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12463315-A	NR	2E-13		0.0215196	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18397787	18397788	rs12463315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12463315-A	NR	5E-12		0.0203046	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
725	chr19	18397787	18397788	rs12463315	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12463315-A	NR	1E-13		0.0219004	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
725	chr19	18398029	18398030	rs12973608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.11		rs12973608-C	NR	2E-13		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
725	chr19	18398029	18398030	rs12973608	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs12973608-A	0.366	5E-31				Affymetrix [10369434] (imputed)	N
725	chr19	18398029	18398030	rs12973608	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	19p13.11	JUND	rs12973608-A	0.338	5E-9		0.009	[0.0061-0.0119] unit decrease	Illumina [27887661] (imputed)	N
725	chr19	18398334	18398335	rs12610691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12610691-T	NR	4E-17		0.0238156	[0.018-0.029] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18398334	18398335	rs12610691	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs12610691-T	NR	1E-17		0.0241934	[0.019-0.03] unit increase	Affymetrix [319769] (imputed)	N
725	chr19	18398627	18398628	rs11086102	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	19p13.11		rs11086102-?	NR	6E-6		0.04	[0.022-0.058] unit increase	Affymetrix, Illumina [NR] (imputed)	N
725	chr19	18398627	18398628	rs11086102	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19p13.11	NR	rs11086102-C	0.63	4E-14		0.0143	[0.011-0.018] unit decrease	NR [NR]	N
725	chr19	18398627	18398628	rs11086102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	RPL39P38	rs11086102-C	0.63333	3E-35		0.028773028	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18398627	18398628	rs11086102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	RPL39P38	rs11086102-G	0.366677	9E-10		0.016889773	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18398627	18398628	rs11086102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs11086102-C	0.656399	3E-59				Affymetrix, Illumina [23467995] (imputed)	N
725	chr19	18398627	18398628	rs11086102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19p13.11	NR	rs11086102-C	0.632941	2E-54		0.031397	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
725	chr19	18398627	18398628	rs11086102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	19p13.11		rs11086102-?	NR	9E-8				NR [~ 8900000] (imputed)	N
725	chr19	18398627	18398628	rs11086102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.11	RPL39P38	rs11086102-C	0.6319	1E-26		0.03966003	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18398627	18398628	rs11086102	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.11	RPL39P38	rs11086102-C	0.6319	3E-20		0.03434421	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18402037	18402038	rs77247474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.11		rs77247474-?	NR	5E-8				Affymetrix [NR] (imputed)	N
725	chr19	18402037	18402038	rs77247474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19p13.11		rs77247474-G	0.907	1E-8				Affymetrix [10369434] (imputed)	N
725	chr19	18402141	18402142	rs10406080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11		rs10406080-G	0.616055	7E-12		0.015678242	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr19	18404935	18404936	rs4808779	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	19p13.11		rs4808779-A	0.6592	2E-8		0.0677	[0.044-0.091] unit increase	Affymetrix, Illumina [NR] (imputed)	N
725	chr19	18404935	18404936	rs4808779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.11	intergenic	rs4808779-G	0.6279	2E-18		0.03289263	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18405350	18405351	rs1549143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs1549143-T	NR	4E-13		0.0240738	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18405350	18405351	rs1549143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs1549143-T	NR	1E-13		0.0246513	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
725	chr19	18405350	18405351	rs1549143	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	RPL39P38	rs1549143-T	NR	4E-13		0.024353	[0.018-0.031] unit decrease	Affymetrix [321169] (imputed)	N
725	chr19	18405350	18405351	rs1549143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs1549143-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18407277	18407277	rs572643200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11		rs572643200-CT	0.354754	8E-14		0.022215767	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18407277	18407277	rs572643200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11		rs572643200-CT	0.354643	3E-10		0.016442794	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18407277	18407277	rs572643200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11		rs572643200-CT	0.354658	7E-19		0.022072388	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18408518	18408519	rs8108623	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	19p13.11	JUND, LSM4	rs8108623-A	0.695	4E-8		0.39	[0.18-0.6] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
725	chr19	18413060	18413061	rs74929147	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19p13.11		rs74929147-G	0.941	2E-18		0.21	[0.16-0.21] % increase	Affymetrix [NR] (imputed)	N
725	chr19	18413060	18413061	rs74929147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs74929147-?	NR	5E-25				NR [~ 8900000] (imputed)	N
725	chr19	18413060	18413061	rs74929147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs74929147-?	NR	8E-11				NR [~ 8900000] (imputed)	N
725	chr19	18413060	18413061	rs74929147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19p13.11	LSM4	rs74929147-A	0.06	9E-10		0.04742117	[0.032-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18413060	18413061	rs74929147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.11	LSM4	rs74929147-A	0.0599	4E-13		0.05570995	[0.041-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18413060	18413061	rs74929147	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.11	LSM4	rs74929147-A	0.0599	1E-10		0.04950154	[0.034-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
725	chr19	18414174	18414175	rs11670016	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs11670016-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18415743	18415747	rs145966800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p13.11		rs145966800-A	NR	3E-17		0.0368	[0.028-0.045] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
725	chr19	18415743	18415747	rs145966800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.11	LSM4	rs145966800-A	0.06021	8E-25		0.04843112	[0.039-0.058] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18415743	18415747	rs145966800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.11	LSM4	rs145966800-A	0.060014	7E-18		0.04143912	[0.032-0.051] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18415743	18415747	rs145966800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11	LSM4	rs145966800-A	0.060199	8E-21		0.04437885	[0.035-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr19	18415743	18415747	rs145966800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11	LSM4	rs145966800-A	0.0602160000000001	1E-13		0.035434306	[0.026-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr19	18415743	18415747	rs145966800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.11	LSM4	rs145966800-A	0.060198	1E-24		0.048793	[0.04-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr19	18421061	18421062	rs148071254	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	19p13.11	NR	rs148071254-G		6E-6		0.6978	[0.39-1.01] SD units increase	NR [10700000] (imputed)	N
725	chr19	18423637	18423638	rs2232967	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs2232967-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18425757	18425758	rs112595944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs112595944-A	0.0593383	5E-33				Affymetrix, Illumina [24332387] (imputed)	N
725	chr19	18425757	18425758	rs112595944	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p13.11	NR	rs112595944-A	0.060976	1E-34		0.04984	[0.042-0.058] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
725	chr19	18425757	18425758	rs112595944	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.11		rs112595944-?	NR	2E-28				NR [~ 8900000] (imputed)	N
725	chr19	18426790	18426791	rs60931638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	LSM4	rs60931638-T	0.060235	1E-9		0.028367274	[0.019-0.038] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18429162	18429163	rs73925443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	LSM4	rs73925443-A	0.060287	1E-16		0.038632613	[0.029-0.048] unit increase	Affymetrix [93095623] (imputed)	N
725	chr19	18429162	18429163	rs73925443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.11	LSM4	rs73925443-A	0.0602740000000001	2E-20		0.042815488	[0.034-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr19	18444808	18444809	rs1363119	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	19p13.11	PGPEP1, LSM4	rs1363119-A	NR	2E-10		1.0363449	[1.0251-1.0475]	Affymetrix, Illumina [up to 7600000] (imputed)	N
725	chr19	18444808	18444809	rs1363119	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19p13.11	RN7SL513P	rs1363119-A	NR	2E-11		6.676	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
725	chr19	18444808	18444809	rs1363119	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	19p13.11	RN7SL513P	rs1363119-A	NR	4E-9		0.018189283	[0.012-0.024] unit decrease	Affymetrix [NR]	N
725	chr19	18449237	18449238	rs9636202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19p13.11		rs9636202-A	NR	1E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
725	chr19	18449237	18449238	rs9636202	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	19p13.11	PGPEP1	rs9636202-G	0.73	2E-10		0.035	unit increase	NR [2324712] (imputed)	N
725	chr19	18449237	18449238	rs9636202	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	19p13.11		rs9636202-A	0.2653	4E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
725	chr19	18449237	18449238	rs9636202	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19p13.11	LSM4, PGPEP1	rs9636202-G	0.7338	4E-11		1.026341		Affymetrix [11880941] (imputed)	N
725	chr19	18449237	18449238	rs9636202	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	19p13.11	NR	rs9636202-A	0.262	7E-6		0.0183	[0.01-0.026] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
725	chr19	18452194	18452195	rs12459965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.11		rs12459965-?	NR	4E-12				NR [~ 8900000] (imputed)	N
725	chr19	18454824	18454825	rs17724992	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19p13.11		rs17724992-G	NR	7E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
725	chr19	18454824	18454825	rs17724992	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19p13.11	NR	rs17724992-A	NR	5E-7		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
725	chr19	18454824	18454825	rs17724992	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	19p13.11	PGPEP1	rs17724992-A	0.733	9E-7		0.0124	[0.0075-0.0173] unit increase	Affymetrix [11535925] (imputed)	N
725	chr19	18454824	18454825	rs17724992	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	19p13.11	PGPEP1	rs17724992-G	0.27	4E-12		0.017	[0.013-0.021] unit decrease	Illumina [6108953] (imputed)	N
725	chr19	18454824	18454825	rs17724992	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	PGPEP1	rs17724992-A	0.7369	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18454824	18454825	rs17724992	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19p13.11	PGPEP1	rs17724992-A	0.7369	5E-6		0.0174	[0.01-0.0248] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18454824	18454825	rs17724992	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	19p13.11	PGPEP1	rs17724992-A	NR	1E-6	(additive model)	0.023	[0.013-0.033] unit increase	NR [9288881] (imputed)	N
725	chr19	18454824	18454825	rs17724992	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19p13.11	NR	rs17724992-A	0.743708279308239	5E-8		0.017328002	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
725	chr19	18454824	18454825	rs17724992	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.11	PGPEP1	rs17724992-A	0.748	1E-6	(EA, men)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
725	chr19	18454824	18454825	rs17724992	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.11	PGPEP1	rs17724992-A	0.746	3E-8	(EA)	0.019	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
725	chr19	18454824	18454825	rs17724992	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.11	PGPEP1	rs17724992-A	0.743	8E-9		0.02	[0.013-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
725	chr19	18455656	18455657	rs66978877	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.11		rs66978877-C	0.24	7E-35		12.32	z score increase	Affymetrix [9061022] (imputed)	N
725	chr19	18455656	18455657	rs66978877	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19p13.11		rs66978877-C	0.24	2E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
725	chr19	18455656	18455657	rs66978877	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	NR	rs66978877-T	0.5414	9E-6	(East Asian)	0.2847	[0.16-0.41] unit increase	Illumina [6200000] (imputed)	N
725	chr19	18455656	18455657	rs66978877	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	NR	rs66978877-T	0.5414	4E-6	(East Asian)	0.2075	[0.12-0.3] unit increase	Illumina [6200000] (imputed)	N
725	chr19	18455656	18455657	rs66978877	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	19p13.11	NR	rs66978877-T	0.5458	5E-9	(East Asian)	0.0661	[0.044-0.088] unit increase	Illumina [6200000] (imputed)	N
725	chr19	18459376	18459377	rs12459368	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.11		rs12459368-G	0.25	1E-17		8.57	z score increase	Affymetrix [9061022] (imputed)	N
725	chr19	18459376	18459377	rs12459368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	19p13.11		rs12459368-G	NR	7E-10		0.0443	[0.03-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
725	chr19	18459376	18459377	rs12459368	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.11	NR	rs12459368-G	0.2698	7E-17				NR [9056863] (imputed)	N
725	chr19	18459376	18459377	rs12459368	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19p13.11	NR	rs12459368-G	0.2672	1E-12		0.019853132	[0.014-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
725	chr19	18459376	18459377	rs12459368	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	19p13.11	PGPEP1	rs12459368-G	0.26695	5E-8		0.050655983	[0.032-0.069] unit decrease	Affymetrix [7288503] (imputed)	N
725	chr19	18460955	18460956	rs113230003	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.11	PGPEP1	rs113230003-G	0.739445	1E-15		0.0126164	[0.0095-0.0157] unit increase	Affymetrix [12370749]	N
725	chr19	18460955	18460956	rs113230003	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs113230003-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18460955	18460956	rs113230003	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19p13.11	NR	rs113230003-A	0.255	1E-12		0.00902709	[0.0065-0.0115] unit decrease	NR [9732723] (imputed)	N
725	chr19	18460955	18460956	rs113230003	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19p13.11	NR	rs113230003-A	0.255	1E-10		0.018876148	[0.013-0.025] unit decrease	NR [~ 10000000] (imputed)	N
725	chr19	18460955	18460956	rs113230003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.11		rs113230003-?	NR	2E-8				NR [~ 8900000] (imputed)	N
725	chr19	18460955	18460956	rs113230003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.11		rs113230003-?	NR	4E-20				NR [~ 8900000] (imputed)	N
725	chr19	18460955	18460956	rs113230003	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19p13.11	PGPEP1	rs113230003-A	0.2596	2E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
725	chr19	18460955	18460956	rs113230003	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.11	PGPEP1	rs113230003-A	0.269	6E-6		0.033	[0.019-0.047] unit decrease	Affymetrix [7947838] (imputed)	N
725	chr19	18467397	18467398	rs12984770	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19p13.11	NA	rs12984770-A	0.7311	6E-17		0.0182	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18467885	18467886	rs7248363	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	19p13.11	NR	rs7248363-?	NR	1E-6		1.296	[NR]	Affymetrix [722112]	N
725	chr19	18469016	18469017	rs12986231	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.11	NA	rs12986231-T	0.7288	2E-11		0.015	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
725	chr19	18471609	18471610	rs35343344	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	19p13.11		rs35343344-C	0.733	9E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
725	chr19	18471609	18471610	rs35343344	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.11	NR	rs35343344-?	NR	4E-6		0.0080797	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
725	chr19	18473918	18473919	rs73009436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs73009436-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
725	chr19	18476710	18476711	rs3195944	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19p13.11	GDF15	rs3195944-A	0.88	6E-15		0.33	unit decrease	Illumina [5270624] (imputed)	N
725	chr19	18477016	18477017	rs3746181	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19p13.11		rs3746181-G	0.7996989999999999	1E-14		1.0421813	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
726	chr19	18481332	18481333	rs8105429	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	19p13.11	PGPEP1	rs8105429-G	0.392	5E-6		1.29	[1.17-1.43]	Illumina [580483] (imputed)	N
726	chr19	18482303	18482304	rs1363120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs1363120-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18484921	18484922	rs888663	29628937	Jiang J	2018-03-23	Front Genet	A Meta-Analysis of Genome-Wide Association Studies of Growth Differentiation Factor-15 Concentration in Blood.	Growth differentiation factor-15 levels	4,633 European ancestry individuals	807 European ancestry individuals	19p13.11	PGPEP1, GDF15	rs888663-G	0.197	3E-35		0.312	[0.26-0.36] unit decrease (discovery)	Affymetrix, Illumina [~ 2500000] (imputed)	N
726	chr19	18484921	18484922	rs888663	22997280	Ho JE	2012-09-20	Clin Chem	Clinical and genetic correlates of growth differentiation factor 15 in the community.	Growth differentiation factor-15 levels	3,889 European ancestry individuals	NA	19p13.11	PGPEP1	rs888663-G	0.19	3E-32		0.3	[0.24-0.36] unit decrease	Affymetrix [NR] (imputed)	N
726	chr19	18487666	18487667	rs78015699	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19p13.11	PGPEP1	rs78015699-T	0.02	7E-6	(Age 20-60 years)	0.2155	[0.12-0.31] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
726	chr19	18488284	18488285	rs60164552	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs60164552-C	0.076	7E-37		0.1812	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
726	chr19	18489081	18489082	rs10424912	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs10424912-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18490926	18490927	rs35673587	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDF15	5,368 Icelandic ancestry individuals	NA	19p13.11		rs35673587-T	0.1374	3E-23		0.245919	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
726	chr19	18493294	18493295	rs12459566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19p13.11		rs12459566-T	NR	4E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
726	chr19	18495509	18495510	rs62122430	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p13.11	GDF15	rs62122430-A	0.854809	4E-14		0.00252448	[0.0019-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
726	chr19	18495907	18495908	rs75347775	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	19p13.11	GDF15	rs75347775-A	0.2454	1E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix [~ 7740000] (imputed)	N
726	chr19	18497023	18497024	rs1059519	29628937	Jiang J	2018-03-23	Front Genet	A Meta-Analysis of Genome-Wide Association Studies of Growth Differentiation Factor-15 Concentration in Blood.	Growth differentiation factor-15 levels (conditioned on rs888663)	4,633 European ancestry individuals	807 European ancestry individuals	19p13.11	PGPEP1	rs1059519-?	0.685	1E-22		0.146	[0.12-0.18] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
726	chr19	18497140	18497141	rs1059369	29628937	Jiang J	2018-03-23	Front Genet	A Meta-Analysis of Genome-Wide Association Studies of Growth Differentiation Factor-15 Concentration in Blood.	Growth differentiation factor-15 levels (conditioned on rs888663)	4,633 European ancestry individuals	807 European ancestry individuals	19p13.11	PGPEP1	rs1059369-A	0.247	2E-10		0.141	[0.098-0.184] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
726	chr19	18497902	18497903	rs1227731	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	GDF 15 plasma levels	400 French ancestry individuals	NA	19p13.11		rs1227731-G	NR	1E-13		0.213	[0.16-0.27] ng/mL increase	Illumina [5201092] (imputed)	N
726	chr19	18499421	18499422	rs1058587	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDF15	5,368 Icelandic ancestry individuals	NA	19p13.11		rs1058587-G	0.2382	1E-102		0.409708	[0.37-0.45] unit increase	Illumina [7506463] (imputed)	N
726	chr19	18499814	18499815	rs1054564	22997280	Ho JE	2012-09-20	Clin Chem	Clinical and genetic correlates of growth differentiation factor 15 in the community.	Growth differentiation factor-15 levels	3,889 European ancestry individuals	NA	19p13.11	PGPEP1	rs1054564-C	0.14	8E-28		0.3	[0.24-0.36] unit increase	Affymetrix [NR] (imputed)	N
726	chr19	18500721	18500722	rs16982345	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	19p13.11	GDF15, LRRC25	rs16982345-A	0.25	2E-41		0.104	[0.089-0.12] unit decrease	Illumina [11956931] (imputed)	N
726	chr19	18500721	18500722	rs16982345	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Hyperemesis gravidarum	1,306 European ancestry cases, 15,756 European ancestry controls without nausea and vomiting of pregnancy (NVP)	899 European ancestry cases, 749 European ancestry controls with and without nausea and vomiting of pregnancy (NVP)	19p13.11	GDF15, LRRC25	rs16982345-G	0.73	2E-19		1.5	[1.38-1.65]	Illumina [12687884] (imputed)	N
726	chr19	18501033	18501034	rs1227734	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs1227734-T	0.14	3E-250		0.3739	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
726	chr19	18501033	18501034	rs1227734	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.11	NR	rs1227734-T	0.151	1E-34	(Growth/differentiation factor 15, GDF15.4374.45.2)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
726	chr19	18502373	18502374	rs116399833	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19p13.11	LRRC25	rs116399833-C	0.77367	5E-13		0.0123065	[0.009-0.0156] unit decrease	Affymetrix [12370749]	N
726	chr19	18502373	18502374	rs116399833	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs116399833-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18503193	18503194	rs45543339	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.11	GDF15	rs45543339-C	0.7625	3E-69	(GDF15, 4374_45_2)	0.45002505	[0.4-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
726	chr19	18503193	18503194	rs45543339	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19p13.11	GDF15	rs45543339-T	0.259	1E-99	(Growth/differentiation factor 15, GDF15.4374.45.2)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
726	chr19	18512817	18512826	rs5827412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19p13.11	LRRC25	rs5827412-T	0.410404	3E-76		0.042196006	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
726	chr19	18512817	18512826	rs5827412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19p13.11	LRRC25	rs5827412-T	0.4122	1E-27		0.03952068	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18512931	18512932	rs1560117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	LRRC25	rs1560117-T	0.471563	1E-12		0.015697714	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
726	chr19	18513593	18513594	rs1985157	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19p13.11		rs1985157-?	NR	5E-8				Affymetrix [NR] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11		rs1985157-C	0.410708	9E-43		0.030757667	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.11		rs1985157-C	0.410687	5E-31		0.02602827	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs1985157-C	0.377911	3E-16				Affymetrix, Illumina [24649327] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.11	NR	rs1985157-C	0.409933	2E-18		0.017255	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs1985157-C	0.391786	2E-35				Affymetrix, Illumina [23114412] (imputed)	N
726	chr19	18513593	18513594	rs1985157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19p13.11	NR	rs1985157-C	0.410403	1E-38		0.026496	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
726	chr19	18513593	18513594	rs1985157	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.11	NR	rs1985157-T	0.58735	1E-15		0.0166675	[0.013-0.021] unit decrease	NR [NR]	N
726	chr19	18513593	18513594	rs1985157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.11		rs1985157-?	NR	4E-11				NR [~ 8900000] (imputed)	N
726	chr19	18513593	18513594	rs1985157	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	19p13.11	Intergenic	rs1985157-T	NR	4E-7		0.0193726	[0.012-0.027] unit decrease	Illumina [13520550] (imputed)	N
726	chr19	18513593	18513594	rs1985157	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19p13.11	intergenic	rs1985157-C	0.4123	7E-30		0.04115012	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18515740	18515741	rs11668719	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19p13.11	AC008397.1	rs11668719-C	0.4676	2E-14		0.02722951	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18515801	18515802	rs11671863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.11		rs11671863-A	NR	8E-17		0.0209	[0.016-0.026] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
726	chr19	18516307	18516308	rs575404063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19p13.11	AC008397.1	rs575404063-C	0.4871	1E-12		0.02584471	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18516307	18516308	rs575404063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19p13.11	AC008397.1	rs575404063-C	0.4872	3E-13		0.02659022	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18516307	18516308	rs575404063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19p13.11	AC008397.1	rs575404063-C	0.4872	2E-13		0.02677423	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18516307	18516308	rs575404063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19p13.11	AC008397.1	rs575404063-C	0.487	7E-10		0.02256855	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18516307	18516308	rs575404063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19p13.11	AC008397.1	rs575404063-C	0.4871	1E-12		0.02594769	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18517330	18517331	rs12971295	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	19p13.11	LRRC25, SSBP4	rs12971295-?	NR	7E-7		1.1363636	[1.08-1.19]	Illumina [at least 5000000] (imputed)	N
726	chr19	18517766	18517767	rs13344313	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.11	LRRC25, SSBP4	rs13344313-A	NR	2E-6		0.862	[0.8-0.92]	NR [NR] (imputed)	N
726	chr19	18517766	18517767	rs13344313	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19p13.11	LRRC25, SSBP4	rs13344313-A	NR	1E-10		0.86	[0.81-0.91]	Illumina [NR] (imputed)	N
726	chr19	18517766	18517767	rs13344313	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	19p13.11	LRRC25, SSBP4	rs13344313-?	NR	1E-8		1.1111112	[1.08-1.16]	Illumina [at least 5000000] (imputed)	N
726	chr19	18518215	18518216	rs9749546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	AC008397.1	rs9749546-C	0.291237	1E-11		0.016840778	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
726	chr19	18518777	18518778	rs10424080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.11		rs10424080-?	NR	3E-19				NR [~ 8900000] (imputed)	N
726	chr19	18519997	18519999	rs142780001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	AC008397.1	rs142780001-C	0.338511	6E-18		0.0142766	[0.0097-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
726	chr19	18524830	18524830	rs147303113	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 58)	19,670 European ancestry individuals	NA	19p13.11		rs147303113-?	NR	3E-11				NR [9705931] (imputed)	N
726	chr19	18527256	18527257	rs7257932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.11	SSBP4	rs7257932-A	0.330106	9E-11		0.015309215	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
726	chr19	18527256	18527257	rs7257932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs7257932-A	0.329141	3E-13				Affymetrix, Illumina [19905671] (imputed)	N
726	chr19	18530160	18530161	rs28375303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	19p13.11		rs28375303-G	NR	3E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
726	chr19	18530160	18530161	rs28375303	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.11	SSBP4	rs28375303-G	0.3295	2E-10		0.02409441	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18533641	18533642	rs7258465	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs7258465-C	0.3436	3E-28	(EA)	0.0725	[0.06-0.085] unit decrease	Illumina [~ 11800000] (imputed)	N
726	chr19	18536415	18536416	rs8106096	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	19p13.11	SSBP4	rs8106096-C	0.67	2E-6		0.84	[0.49-1.19] g/day increase	Affymetrix [10353649] (imputed)	N
726	chr19	18540987	18540988	rs11673604	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19p13.11	SSBP4	rs11673604-T	0.759	4E-12		1.144	[1.11-1.18]	Illumina [11270530] (imputed)	N
726	chr19	18540987	18540988	rs11673604	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	19p13.11	NR	rs11673604-?		4E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
726	chr19	18548883	18548884	rs2303696	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19p13.11	ISYNA1	rs2303696-T	0.619745	1E-15		0.0154134	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
726	chr19	18557035	18557035	rs144976070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	ELL	rs144976070-AGCAGGCCACTAG	0.323862	3E-22		0.023413321	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
726	chr19	18557037	18557037	rs11267755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19p13.11		rs11267755-AGCAGGCCACTAG	NR	8E-24		0.027	[0.022-0.032] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
726	chr19	18558875	18558876	rs8111708	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	19p13.11	ISYNA1, ELL, SSBP4	rs8111708-?	NR	2E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [11480632] (imputed)	N
726	chr19	18558875	18558876	rs8111708	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	19p13.11	ELL	rs8111708-A	0.653	2E-12		0.1515	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
726	chr19	18566394	18566395	rs8103660	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19p13.11	NR	rs8103660-C	0.354431	3E-9	(Conditioned on chr19:18460956)	0.015802572	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
726	chr19	18566803	18566804	rs1806980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs1806980-?	NR	2E-23				NR [~ 8900000] (imputed)	N
726	chr19	18567038	18567039	rs731945	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	19p13.11	intergenic	rs731945-T	0.3154	6E-6		0.0582	[0.033-0.083] unit increase	Illumina [2400000] (imputed)	N
726	chr19	18571140	18571141	rs4808801	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	19p13.11		rs4808801-A	NR	2E-31		1.07	[1.06-1.08]	Affymetrix, Illumina [NR] (imputed)	N
726	chr19	18571140	18571141	rs4808801	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	ELL	rs4808801-A	0.66	5E-28	(EA)	1.0752687	[1.05-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
726	chr19	18571140	18571141	rs4808801	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19p13.11	NR	rs4808801-A	0.659999999999999	6E-6		1.0416667	[1.01-1.08] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
726	chr19	18571140	18571141	rs4808801	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	19p13.11	NR	rs4808801-A	0.65	6E-14		1.0752687	[1.06-1.1]	Affymetrix, Illumina [~ 14000000] (imputed)	N
726	chr19	18571140	18571141	rs4808801	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	19p13.11	NR	rs4808801-A	0.65	4E-15		1.0752687	[1.06-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
726	chr19	18571140	18571141	rs4808801	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	19p13.11	SSBP4, ISYNA1, ELL	rs4808801-A	0.65	5E-15		1.08	[1.05-1.1]	Affymetrix, Illumina [~ 2600000] (imputed)	N
726	chr19	18575192	18575193	rs78030362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19p13.11		rs78030362-G	NR	1E-13		0.0277	[0.02-0.035] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
726	chr19	18575192	18575193	rs78030362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.11	ELL	rs78030362-G	0.074453	5E-11		0.028093673	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
726	chr19	18575192	18575193	rs78030362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.11		rs78030362-?	NR	2E-16				NR [~ 8900000] (imputed)	N
726	chr19	18575300	18575303	rs34753193	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	ELL	rs34753193-T	0.346838	2E-36		0.029294446	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
726	chr19	18577872	18577873	rs4808802	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	19p13.11	ELL	rs4808802-C	0.218	3E-11		0.028	[0.019-0.036] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
726	chr19	18578688	18578689	rs10413922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19p13.11	NR	rs10413922-C	0.205666	7E-11		0.015981	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
726	chr19	18588799	18588800	rs8111582	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19p13.11	NR	rs8111582-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19p13.11	ELL	rs11670056-?	NR	1E-11		0.0033	[0.0023-0.0043] unit decrease	Affymetrix [21347608] (imputed)	N
726	chr19	18589942	18589943	rs11670056	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19p13.11	ELL	rs11670056-?	NR	2E-9		0.0046	[0.003-0.0062] unit decrease	Affymetrix [21347608] (imputed)	N
726	chr19	18589942	18589943	rs11670056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19p13.11	ELL	rs11670056-T	NR	1E-8		0.0307353	[0.02-0.041] unit decrease	Affymetrix [321169] (imputed)	N
726	chr19	18589942	18589943	rs11670056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19p13.11	NR	rs11670056-T	NR	1E-20		0.0445	[0.035-0.054] unit increase	Affymetrix [9000000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs11670056-T	NR	2E-12		0.0321	[0.023-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs11670056-T	NR	6E-14		0.0343	[0.025-0.043] unit increase	Affymetrix [9000000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs11670056-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.11		rs11670056-?	NR	1E-17				NR [~ 8900000] (imputed)	N
726	chr19	18589942	18589943	rs11670056	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19p13.11		rs11670056-?	NR	4E-11		0.0258698	[0.018-0.034] unit increase	Affymetrix [20259828] (imputed)	N
726	chr19	18589942	18589943	rs11670056	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19p13.11	ELL	rs11670056-T	0.071	4E-12		0.088	[0.063-0.113] unit increase	Affymetrix [7947838] (imputed)	N
726	chr19	18589942	18589943	rs11670056	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19p13.11	ELL	rs11670056-T	0.0758	4E-10		0.04086335	[0.028-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
726	chr19	18597195	18597196	rs60570301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs60570301-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
726	chr19	18604084	18604085	rs7253990	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.11	NR	rs7253990-G	0.3535	2E-11				NR [9056863] (imputed)	N
727	chr19	18612747	18612748	rs8107347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	19p13.11		rs8107347-G	0.650071	2E-9		0.02575	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
727	chr19	18613916	18613917	rs17211813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.11	NR	rs17211813-T	NR	3E-9		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
727	chr19	18614934	18614935	rs7251640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	ELL	rs7251640-C	0.193954	1E-12		0.020236896	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
727	chr19	18614934	18614935	rs7251640	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19p13.11	ELL	rs7251640-T	0.805982	4E-9		0.014263	[0.0095-0.019] unit decrease	Affymetrix [NR] (imputed)	N
727	chr19	18614934	18614935	rs7251640	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19p13.11	ELL	rs7251640-T	0.805995	1E-9		0.0152317	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
727	chr19	18614934	18614935	rs7251640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19p13.11		rs7251640-?	NR	1E-7				NR [~ 8900000] (imputed)	N
727	chr19	18618866	18618867	rs4808136	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19p13.11	ISYNA1	rs4808136-A	0.34	5E-14	(myo-inositol)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
727	chr19	18632224	18632225	rs7252185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.11	ELL	rs7252185-C	0.216115	4E-12		0.018801361	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
727	chr19	18633436	18633437	rs271620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19p13.11		rs271620-C	NR	3E-19		0.0243	[0.019-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	ELL	rs271620-C	0.211542	1E-11		0.018655647	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19p13.11	ELL	rs271620-C	0.211555	4E-31		0.0304801	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19p13.11	ELL	rs271620-C	0.211571	8E-49		0.039394397	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs271620-A	0.792602	4E-17				Affymetrix, Illumina [22063850] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.11	NR	rs271620-A	0.787853	6E-20		0.02207	[0.017-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs271620-C	0.182671	8E-41				Affymetrix, Illumina [24246363] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p13.11	NR	rs271620-C	0.212057	1E-44		0.032549	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs271620-C	0.18332	4E-62				Affymetrix, Illumina [20825802] (imputed)	N
727	chr19	18633436	18633437	rs271620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19p13.11	NR	rs271620-C	0.212147	3E-66		0.040451	[0.036-0.045] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
727	chr19	18633436	18633437	rs271620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs271620-?	NR	9E-55				NR [~ 8900000] (imputed)	N
727	chr19	18633754	18633755	rs172032	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19p13.11	NR	rs172032-C	0.427	9E-10		0.00677628	[0.0046-0.0089] unit increase	NR [9732723] (imputed)	N
727	chr19	18633754	18633755	rs172032	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs172032-C	0.4209	1E-16	(EA)	0.0531	[0.041-0.066] unit decrease	Illumina [~ 11800000] (imputed)	N
727	chr19	18635388	18635389	rs12162221	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19p13.11		rs12162221-G	0.427	1E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
727	chr19	18635388	18635389	rs12162221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19p13.11	ELL	rs12162221-G	NR	2E-8		0.0161889	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
727	chr19	18635388	18635389	rs12162221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.11		rs12162221-?	NR	2E-10				NR [~ 8900000] (imputed)	N
727	chr19	18635974	18635975	rs7247659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19p13.11		rs7247659-G	NR	2E-14		0.0224	[0.017-0.028] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
727	chr19	18635974	18635975	rs7247659	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19p13.11		rs7247659-G	NR	8E-34		0.0352	[0.03-0.041] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
727	chr19	18635974	18635975	rs7247659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19p13.11	ELL	rs7247659-A	0.78865	5E-34		0.0284568	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
727	chr19	18636179	18636180	rs2314670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs2314670-G	0.814233	2E-25				Affymetrix, Illumina [21126107] (imputed)	N
727	chr19	18636179	18636180	rs2314670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.11	NR	rs2314670-G	0.788553	2E-28		0.027142	[0.022-0.032] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
727	chr19	18637617	18637618	rs10420951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19p13.11	ELL, AC005387.3	rs10420951-G	0.7867	4E-16		0.03543113	[0.027-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
727	chr19	18637617	18637618	rs10420951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19p13.11	ELL, AC005387.3	rs10420951-G	0.7866	1E-22		0.04263495	[0.034-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
727	chr19	18640572	18640573	rs10415320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.11	AC005387.3, AC005387.2	rs10415320-A	0.261866	3E-9		0.014974709	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
727	chr19	18652843	18652844	rs10854166	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	19p13.11	FKBP8	rs10854166-A	0.518645	6E-10	(EA)	0.00752479	[0.0051-0.0099] unit increase	Affymetrix [~ 8800000] (imputed)	N
727	chr19	18654587	18654588	rs76615278	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	19p13.11	FKBP8	rs76615278-G	0.82	6E-7		0.2	[0.12-0.28] unit increase	Illumina [7411206] (imputed)	N
727	chr19	18695689	18695690	rs144474740	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19p13.11		rs144474740-T	0.940779	1E-20		1.084787	[1.07-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
727	chr19	18710534	18710535	rs2238647	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRLF1	5,361 Icelandic ancestry individuals	NA	19p13.11		rs2238647-A	0.2214	1E-34		0.269119	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
727	chr19	18710534	18710535	rs2238647	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.11	CRLF1	rs2238647-G	0.7778125	1E-22	(CRLF1, 14747_9_3)	0.28617927	[0.23-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
727	chr19	18718845	18718846	rs2238651	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	19p13.11	CRLF1	rs2238651-T	0.24	4E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
727	chr19	18718845	18718846	rs2238651	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	19p13.11	CRLF1	rs2238651-T	0.24	3E-7		0.033	[0.02-0.046] unit increase	Affymetrix [at least 8900000] (imputed)	N
727	chr19	18733354	18733355	rs111551996	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19p13.11	NR	rs111551996-T	NR	2E-9		0.0342	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
727	chr19	18733354	18733355	rs111551996	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	19p13.11	TMEM59L	rs111551996-G	0.95	8E-10		0.95	[0.64-1.26] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
727	chr19	18733354	18733355	rs111551996	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	19p13.11	TMEM59L	rs111551996-G	0.9493	2E-9		0.9624	[0.65-1.27] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
728	chr19	18747604	18747605	rs3764628	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	19p13.11	intergenic	rs3764628-?	0.12	4E-6	(CL)	1.89	[2.5-1.43]	Illumina [NR]	N
728	chr19	18765662	18765663	rs12974777	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	19p13.11	KLHL26, CRTC1, TMEM59L	rs12974777-C	NR	2E-9		1.0370706	[1.0248-1.0492]	Affymetrix, Illumina [up to 7600000] (imputed)	N
728	chr19	18803171	18803172	rs10419226	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	19p13.11	CRTC1	rs10419226-A	0.456	8E-7		1.19	[1.11-1.27]	Illumina [922031]	N
728	chr19	18803171	18803172	rs10419226	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	19p13.11	CRTC1	rs10419226-A	0.456	4E-10		1.18	[1.12-1.24]	Illumina [922031]	N
728	chr19	18803171	18803172	rs10419226	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	19p13.11	CRTC1	rs10419226-A	0.456	6E-8		1.19	[1.12-1.26]	Illumina [922031]	N
728	chr19	18804294	18804295	rs199620551	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	19p13.11	CRTC1	rs199620551-TG		5E-8		1.11	[1.08-1.15]	Illumina [11951684] (imputed)	N
728	chr19	18806667	18806668	rs2003476	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus or esophageal adenocarcinoma x sex interaction (2df test)	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	19p13.11	CRTC1	rs2003476-T	NR	6E-8				Illumina [up to 9353006] (imputed)	N
728	chr19	18806667	18806668	rs2003476	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	19p13.11	CRTC1	rs2003476-T	NR	2E-8	(male)	1.16	[1.10-1.22]	Illumina [up to 9353006] (imputed)	N
728	chr19	18806667	18806668	rs2003476	32918910	Dong J	2020-09-09	Gastroenterology	Sex-Specific Genetic Associations for Barrett's Esophagus and Esophageal Adenocarcinoma.	Barrett's esophagus  or Esophageal adenocarcinoma	6,758 European ancestry male cases, 1,670 European ancestry female cases, 7,489 European ancestry male controls, 6,174 European ancestry female controls	NA	19p13.11	CRTC1	rs2003476-T	NR	1E-8		0.87	[0.82-0.91]	Illumina [up to 9353006] (imputed)	N
728	chr19	18806667	18806668	rs2003476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19p13.11		rs2003476-?	NR	6E-11				NR [~ 8900000] (imputed)	N
728	chr19	18806667	18806668	rs2003476	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	19p13.11	CRTC1	rs2003476-T	0.6005	1E-6		0.0341	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
728	chr19	18808914	18808915	rs7258722	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	19p13.11	NR	rs7258722-T	0.6	7E-10		0.096	unit increase	NR [2324712] (imputed)	N
728	chr19	18809710	18809711	rs55935482	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs55935482-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
728	chr19	18812784	18812785	rs8112818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.11		rs8112818-?	NR	1E-24				NR [~ 8900000] (imputed)	N
728	chr19	18813404	18813405	rs13345612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs13345612-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
728	chr19	18817641	18817642	rs75186747	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs75186747-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
728	chr19	18817902	18817903	rs10423674	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	19p13.11	CRTC1	rs10423674-A	0.34	9E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
728	chr19	18817902	18817903	rs10423674	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	19p13.11	CRTC1	rs10423674-A	0.35	6E-9		2.3	[1.52-3.08] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19p13.11	NR	rs757318-A	0.4803	7E-14		0.018522829	[0.014-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
728	chr19	18820307	18820308	rs757318	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19p13.11	NR	rs757318-C	NR	7E-8		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19p13.11	CRTC1	rs757318-C	0.5106999999999999	2E-6	(EA)	0.0203	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19p13.11	CRTC1	rs757318-C	0.49760000000000004	2E-7		0.0211	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-?	NR	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-?	NR	4E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-?	NR	3E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-?	NR	1E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-C	0.5106999999999999	2E-8	(EA)	0.0213	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-C	0.5106999999999999	1E-6	(EA, women)	0.0239	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-C	0.49760000000000004	5E-7	(women)	0.0235	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19p13.11	CRTC1	rs757318-C	0.49760000000000004	3E-8		0.0202	[0.013-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
728	chr19	18820307	18820308	rs757318	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19p13.11	CRTC1	rs757318-C	0.51	8E-8	(European women)	0.037	[0.023-0.051] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
728	chr19	18820307	18820308	rs757318	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19p13.11	CRTC1	rs757318-C	0.51	1E-6	(European)	0.024	[0.014-0.034] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
728	chr19	18820307	18820308	rs757318	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19p13.11	CRTC1	rs757318-C	0.5	5E-8	(women)	0.037	[0.024-0.05] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
728	chr19	18820307	18820308	rs757318	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19p13.11	CRTC1	rs757318-C	0.5	2E-7		0.024	[0.014-0.034] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
728	chr19	18820307	18820308	rs757318	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19p13.11	NR	rs757318-A	0.484583832022932	5E-13		0.019826295	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
728	chr19	18826974	18826975	rs10221489	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19p13.11	NA	rs10221489-T	0.3366	1E-22		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
728	chr19	18834123	18834124	rs2023878	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	19p13.11	C19orf60, CRTC1	rs2023878-C	0.81	3E-9		0.036	unit increase	NR [2324712] (imputed)	N
728	chr19	18834513	18834514	rs10404726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19p13.11		rs10404726-T	NR	5E-16		0.0156	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
728	chr19	18834513	18834514	rs10404726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19p13.11		rs10404726-T	NR	5E-18		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
728	chr19	18834513	18834514	rs10404726	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.11	NR	rs10404726-C	0.5305	3E-9		0.0277	[0.018-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
728	chr19	18834513	18834514	rs10404726	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.11	NR	rs10404726-C	0.4829	1E-9		0.0255	[0.017-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
728	chr19	18834513	18834514	rs10404726	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.11	CRTC1	rs10404726-C	0.534535	5E-19		0.0122931	[0.0096-0.015] unit increase	Affymetrix [12370749]	N
728	chr19	18835114	18835115	rs2051815	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs for peptic ulcer and gastro-oesophageal reflux disease)	53,137 European ancestry cases, 79,230 European ancestry controls	NA	19p13.11	CRTC1	rs2051815-A	0.320032	5E-8		0.04516697	[0.029-0.061] unit decrease	Affymetrix [7288503] (imputed)	N
728	chr19	18836673	18836674	rs11668500	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs11668500-?	NR	4E-22				Affymetrix [~ 8270000] (imputed)	N
728	chr19	18836673	18836674	rs11668500	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.11	NA	rs11668500-C	0.5076	2E-23		0.0191	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
728	chr19	18836673	18836674	rs11668500	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19p13.11	NA	rs11668500-C	0.5076	2E-23		0.0191	[0.015-0.023] unit increase	NR [~ 27400000] (imputed)	N
728	chr19	18837822	18837823	rs11878507	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.11	NA	rs11878507-A	0.5056	1E-9		0.0119	[0.008-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
728	chr19	18838013	18838014	rs11881338	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19p13.11	CRTC1	rs11881338-T	NR	4E-9		0.00739265	[0.0049-0.0099] unit decrease	Affymetrix [10061374] (imputed)	N
728	chr19	18839682	18839683	rs146543016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19p13.11	Intergenic	rs146543016-C	0.7048	6E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
728	chr19	18841156	18841157	rs11880800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19p13.11		rs11880800-?	NR	8E-8				NR [~ 8900000] (imputed)	N
728	chr19	18841756	18841757	rs112253475	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Growth differentiation factor-15 levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs112253475-A	0.98	6E-17		0.273	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
728	chr19	18843751	18843752	rs4808154	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19p13.11	CRTC1	rs4808154-T	0.7189	5E-9		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
728	chr19	18843751	18843752	rs4808154	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19p13.11	CRTC1	rs4808154-T	0.714	4E-7		0.0026	[0.0018-0.0034] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
729	chr19	18888149	18888150	rs78830644	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs78830644-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
729	chr19	18892727	18892728	rs10038	25057126	Ramos YF	2014-07-23	J Med Genet	Meta-analysis identifies loci affecting levels of the potential osteoarthritis biomarkers sCOMP and uCTX-II with genome wide significance.	Osteoarthritis biomarkers	up to 4,654 European ancestry individuals	964 European ancestry individuals	19p13.11	COMP	rs10038-A	0.334	7E-6	(sCOMP)	0.11	[NR] unit increase	Illumina [up to 1961964] (imputed)	N
729	chr19	18906547	18906548	rs12974746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COMP	5,348 Icelandic ancestry individuals	NA	19p13.11		rs12974746-G	0.03527	3E-16		0.386282	[0.29-0.48] unit decrease	Illumina [7506463] (imputed)	N
729	chr19	18916862	18916863	rs144778694	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	19p13.11	COMP	rs144778694-A	0.07	3E-6		2.45	[1.43-3.47] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
729	chr19	18942558	18942559	rs2238652	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder	71 Korean ancestry child cases, 64 Korean ancestry child controls	NA	19p13.11	UPF1	rs2238652-T	0.289	3E-6		4.79	[2.28-10.0]	Affymetrix [525356]	N
730	chr19	19017861	19017862	rs10330	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19p13.11		rs10330-A	0.1241	2E-8		0.12052609	[0.078-0.163] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
730	chr19	19035353	19035354	rs2301659	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19p13.11	DDX49	rs2301659-G	0.32	3E-7		0.1679	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
730	chr19	19035353	19035354	rs2301659	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal P-tau181p levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19p13.11	DDX49	rs2301659-G	0.32	3E-6		0.1186	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
730	chr19	19049197	19049198	rs1064351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs1064351-?	NR	3E-8				NR [~ 8900000] (imputed)	N
730	chr19	19063558	19063559	rs73004826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs73004826-A	NR	1E-14		0.0538	[0.04-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
730	chr19	19063558	19063559	rs73004826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs73004826-A	NR	3E-34		0.085	[0.071-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
730	chr19	19063558	19063559	rs73004826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs73004826-A	NR	8E-11		0.0453	[0.032-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
730	chr19	19063558	19063559	rs73004826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs73004826-A	NR	5E-29		0.0778	[0.064-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
730	chr19	19063558	19063559	rs73004826	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs73004826-A	NR	4E-24		0.0707	[0.057-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
730	chr19	19083590	19083591	rs148669811	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs148669811-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
730	chr19	19085089	19085090	rs34086136	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function (left/right asymmetry)	5,344 European ancestry children	NA	19p13.11		rs34086136-T	0.53	4E-6		0.09	[0.051-0.129] unit increase	Illumina [5305352] (imputed)	N
730	chr19	19131012	19131013	rs141292672	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	19p13.11	NR	rs141292672-?	NR	5E-8				Illumina [7760689] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	8E-35		0.0679	[0.057-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	3E-67		0.0956	[0.085-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	5E-21		0.052	[0.041-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	1E-55		0.0868	[0.076-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	2E-14		0.0456	[0.034-0.057] unit increase	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	8E-16		0.0445	[0.034-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	1E-13		0.0409	[0.03-0.052] unit increase	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	5E-41		0.0742	[0.063-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
731	chr19	19155671	19155672	rs73008942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.11	NR	rs73008942-A	NR	4E-23		0.0547	[0.044-0.065] unit increase	Affymetrix [9000000] (imputed)	N
731	chr19	19200344	19200345	rs757201142	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	19p13.11	NR	rs757201142-A	0.6899	3E-7		2.5519	[1.57-3.53] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
731	chr19	19209343	19209344	rs5827430	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	19p13.11	NR	rs5827430-T	0.6495	3E-7		2.4043	[1.48-3.32] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
731	chr19	19252778	19252779	rs190121281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic bile duct cancer	832 European ancestry cases, 475,259 European ancestry controls, 418 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	19p13.11		rs190121281-A	NR	4E-9		2.0911	[1.4-2.79] unit increase	Affymetrix, Illumina [25843020] (imputed)	N
731	chr19	19252778	19252779	rs190121281	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipid measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	19p13.11	NR	rs190121281-?	NR	5E-23	(Other polyunsaturated fatty acids than 18:2, conditioned)	0.3228719	[0.26-0.39] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
731	chr19	19260685	19260686	rs75746498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	MEF2B, MEF2BNB	rs75746498-T	0.248	6E-8	(Japanese)	0.3529	[0.22-0.48] unit increase	Illumina [6200000] (imputed)	N
731	chr19	19260685	19260686	rs75746498	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	MEF2B, MEF2BNB-MEF2B	rs75746498-T	0.248	3E-9	(Japanese)	0.3497	[0.23-0.47] unit increase	Illumina [6200000] (imputed)	N
731	chr19	19260685	19260686	rs75746498	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	19p13.11	MEF2B, MEF2BNB-MEF2B	rs75746498-?	NR	9E-9		0.02698	[0.018-0.036] unit increase	Illumina [6108953] (imputed)	N
731	chr19	19261850	19261851	rs11879715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19p13.11		rs11879715-C	NR	5E-12		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
731	chr19	19263937	19263938	rs58190593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	MEF2B, MEF2BNB-MEF2B	rs58190593-T	0.34	6E-6	(Japanese)	0.3725	[0.21-0.53] unit increase	Illumina [6200000] (imputed)	N
731	chr19	19263937	19263938	rs58190593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	MEF2B, MEF2BNB	rs58190593-T	0.3413	9E-8	(Japanese)	0.3118	[0.2-0.43] unit increase	Illumina [6200000] (imputed)	N
731	chr19	19263937	19263938	rs58190593	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	19p13.11	MEF2B, MEF2BNB-MEF2B	rs58190593-T	0.3413	1E-7	(Japanese)	0.2807	[0.18-0.38] unit increase	Illumina [6200000] (imputed)	N
731	chr19	19263937	19263938	rs58190593	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	19p13.11	MEF2B, MEF2BNB-MEF2B	rs58190593-?	NR	1E-9		0.02567	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
731	chr19	19266847	19266848	rs7360000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	19p13.11		rs7360000-T	0.352887	2E-9		0.0215495	[0.015-0.029] unit increase	Illumina [13477770] (imputed)	N
731	chr19	19266847	19266848	rs7360000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	19p13.11		rs7360000-T	0.352876	3E-10		0.0232124	[0.016-0.03] unit increase	Illumina [13477767] (imputed)	N
732	chr19	19271497	19271498	rs1005980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19p13.11		rs1005980-G	NR	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
732	chr19	19276358	19276359	rs7249142	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	19p13.11	BORCS8-MEF2B, MEF2B	rs7249142-A	0.3844	5E-6		0.1474	[0.084-0.211] unit increase	NR [NR] (imputed)	N
732	chr19	19276358	19276359	rs7249142	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	19p13.11	BORCS8-MEF2B, MEF2B	rs7249142-A	0.3947	8E-6		0.1495	[0.084-0.215] unit increase	NR [NR] (imputed)	N
732	chr19	19276358	19276359	rs7249142	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	19p13.11	BORCS8-MEF2B, MEF2B	rs7249142-A	0.3947	9E-6	(female)	0.1152	[0.064-0.166] unit increase	NR [NR] (imputed)	N
732	chr19	19276358	19276359	rs7249142	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	19p13.11	NR	rs7249142-G	0.619273395452519	9E-6	(IGP30)	0.1523	[0.085-0.219] unit increase	Illumina [~ 2500000] (imputed)	N
732	chr19	19277401	19277402	rs11669861	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19p13.11	MEF2B, MEF2BNB-MEF2B	rs11669861-C	NR	8E-6		1.0506408	NR	Affymetrix, Illumina [8278136] (imputed)	N
732	chr19	19286076	19286077	rs11671119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	19p13.11		rs11671119-T	0.257311	2E-8		0.0228729	[0.015-0.031] unit increase	Illumina [13477770] (imputed)	N
732	chr19	19288500	19288501	rs200892889	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p13.11	BORCS8, BORCS8-MEF2B	rs200892889-A	0.0422	4E-6		0.1012	[0.058-0.144] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
732	chr19	19299078	19299079	rs8100480	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	19p13.11	MEF2BNB	rs8100480-C	NR	3E-8		1.4095	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
732	chr19	19301185	19301186	rs3761081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs3761081-A	NR	1E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19301185	19301186	rs3761081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs3761081-A	NR	5E-9		0.0181	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-9		0.121914	[0.083-0.161] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-8		0.105447	[0.068-0.143] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-12		0.135685	[0.097-0.174] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-11		0.128	[0.09-0.166] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-9		0.115858	[0.078-0.154] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-9		0.114289	[0.076-0.152] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	6E-9		0.111563	[0.074-0.149] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-9		0.113897	[0.076-0.152] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-8		0.109713	[0.071-0.149] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	7E-11		0.130775	[0.091-0.17] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-12		0.139187	[0.1-0.18] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-10		0.127675	[0.089-0.166] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-11		0.128613	[0.091-0.167] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	8E-11		0.128093	[0.089-0.167] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	5E-15		0.155473	[0.12-0.19] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	9E-11		0.128552	[0.09-0.167] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-8		0.110546	[0.071-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	2E-22		0.188997	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	2E-19		0.174215	[0.14-0.21] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	2E-17		0.166105	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	5E-11		0.132096	[0.093-0.171] unit decrease	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-9		0.115499	[0.077-0.154] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-8		0.111004	[0.072-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-11		0.131692	[0.093-0.171] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-10		0.128284	[0.089-0.168] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	5E-10		0.120548	[0.083-0.159] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-10		0.12594	[0.087-0.165] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	4E-9		0.112313	[0.075-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	7E-12		0.134884	[0.096-0.173] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	1E-27		0.210371	[0.17-0.25] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	5E-12		0.137134	[0.098-0.176] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-9		0.118854	[0.081-0.157] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-9		0.120122	[0.081-0.16] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-10		0.124449	[0.086-0.163] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-10		0.127113	[0.088-0.166] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987723	6E-17		0.160037	[0.12-0.2] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	5E-9		0.112973	[0.075-0.151] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-9		0.12206	[0.083-0.162] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	6E-11		0.131307	[0.092-0.171] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-10		0.122371	[0.084-0.16] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-9		0.117941	[0.079-0.157] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-13		0.148496	[0.11-0.19] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-9		0.120549	[0.081-0.16] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-11		0.133011	[0.094-0.172] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-8		0.11532	[0.076-0.155] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	5E-8		0.110174	[0.071-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	8E-9		0.116251	[0.077-0.156] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-11		0.131996	[0.093-0.171] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	2E-9		0.11589	[0.078-0.154] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	1E-8		0.114391	[0.075-0.154] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	6E-11		0.128508	[0.09-0.167] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-8		0.11188	[0.072-0.151] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-11		0.130043	[0.092-0.169] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	4E-8		0.106553	[0.069-0.145] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs150057262-C	0.987717	3E-9		0.112002	[0.075-0.149] unit increase	NR [11722792] (imputed)	N
732	chr19	19320824	19320825	rs150057262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	NCAN	rs150057262-G	0.01206	4E-9		0.06518483	[0.043-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr19	19325962	19325963	rs3761077	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial sphingomyelins	4,348 individuals	NA	19p13.11		rs3761077-T	0.102296989	6E-9		0.221808	[0.15-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19325962	19325963	rs3761077	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phosphatidylcholine and other cholines	4,348 individuals	NA	19p13.11		rs3761077-T	0.102516562	7E-9		0.228786	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19329923	19329924	rs2228603	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	19p13.11	NCAN	rs2228603-T	NR	1E-35				NR [2501549] (imputed)	N
732	chr19	19329923	19329924	rs2228603	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	19p13.11	NCAN	rs2228603-T	NR	7E-21				NR [2501749] (imputed)	N
732	chr19	19336607	19336608	rs2238675	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs2238675-?	NR	6E-12		0.05091806	[0.036-0.065] unit decrease	Illumina [31978265] (imputed)	N
732	chr19	19336607	19336608	rs2238675	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.11	NR	rs2238675-?	NR	3E-10		3.8943	[2.68-5.11] unit decrease	Illumina [32003504] (imputed)	N
732	chr19	19336607	19336608	rs2238675	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.11	NR	rs2238675-?	NR	6E-7		2.729091	[1.65-3.8] unit decrease	Illumina [31808917] (imputed)	N
732	chr19	19336607	19336608	rs2238675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2238675-C	NR	7E-8		0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19336607	19336608	rs2238675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2238675-C	0.878	3E-16	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19336607	19336608	rs2238675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2238675-C	0.874	3E-8	(Hispanic)	0.121	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19336607	19336608	rs2238675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2238675-C	0.878	2E-10	(EA)	0.051	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19336607	19336608	rs2238675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2238675-C	0.878	4E-6	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19336607	19336608	rs2238675	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	LDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	19p13.11	NCAN	rs2238675-C	0.887	2E-8	(Hispanic)	0.125	[0.082-0.168] unit increase	Affymetrix [at least 370268] (imputed)	N
732	chr19	19336607	19336608	rs2238675	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	19p13.11	NCAN	rs2238675-C	0.887	1E-13	(Hispanic)	0.164	[0.12-0.21] unit increase	Affymetrix [at least 370268] (imputed)	N
732	chr19	19349162	19349163	rs375854561	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	19p13.11		rs375854561-?	NR	2E-8		0.361752	[0.21-0.51] unit increase	NR [9800000] (imputed)	N
732	chr19	19358085	19358086	rs112219496	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	19p13.11	NR	rs112219496-G	0.857	5E-9		0.91192	[0.88-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
732	chr19	19358206	19358207	rs111444407	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	19p13.11		rs111444407-?	NR	3E-10		0.0174	NR unit increase	NR [6265453] (imputed)	N
732	chr19	19358206	19358207	rs111444407	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	19p13.11	NCAN	rs111444407-T	NR	5E-10		1.097	[1.065-1.130]	Illumina [3742365] (imputed)	N
732	chr19	19358206	19358207	rs111444407	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	19p13.11	NR	rs111444407-?		9E-10				NR [8956949]	N
732	chr19	19358206	19358207	rs111444407	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	19p13.11	MEF2BNB-MEF2B, MEF2BNB, RFXANK, NR2C2AP, NCAN, HAPLN4, TM6SF2, SUGP1, MAU2, GATAD2A, TSSK6, NDUFA13, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1	rs111444407-T	0.148	1E-9		1.09702	[1.07-1.13]	NR [9372253] (imputed)	N
732	chr19	19358206	19358207	rs111444407	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar II disorder	3,421 European ancestry cases, 31,358 European ancestry controls	NA	19p13.11	MEF2BNB-MEF2B, MEF2BNB, RFXANK, NR2C2AP, NCAN, HAPLN4, TM6SF2, SUGP1, MAU2, GATAD2A, TSSK6, NDUFA13, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1	rs111444407-T	0.144	4E-6		1.18685	[NR]	NR [9372253] (imputed)	N
732	chr19	19358206	19358207	rs111444407	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	19p13.11	MEF2BNB-MEF2B, MEF2BNB, RFXANK, NR2C2AP, NCAN, HAPLN4, TM6SF2, SUGP1, MAU2, GATAD2A, TSSK6, NDUFA13, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1	rs111444407-T	0.147	3E-9		1.13032		NR [9372253] (imputed)	N
732	chr19	19359499	19359500	rs10423874	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	19p13.11	NR	rs10423874-?		8E-9				NR [520857]	N
732	chr19	19361151	19361152	rs55989964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs55989964-G	NR	1E-11		0.0397	[0.028-0.051] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19361151	19361152	rs55989964	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs55989964-G	NR	2E-12		0.0414	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19361734	19361735	rs1064395	21353194	Cichon S	2011-02-23	Am J Hum Genet	Genome-wide association study identifies genetic variation in neurocan as a susceptibility factor for bipolar disorder.	Bipolar disorder	682 European ancestry cases, 1,300 European ancestry controls	7,759 European ancestry cases, 34,062 European ancestry controls	19p13.11	NCAN	rs1064395-A	0.16	2E-9		1.17	[NR]	Illumina [511978]	N
732	chr19	19365177	19365178	rs141844019	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (2df)	73,908 European ancestry individuals	7,284 European ancestry individuals	19p13.11	HAPLN4	rs141844019-T	0.0109	4E-53				Affymetrix [7953600] (imputed)	N
732	chr19	19365177	19365178	rs141844019	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	Triglyceride levels x fish oil supplementation interaction (1df)	73,908 European ancestry individuals	7,284 European ancestry individuals	19p13.11	HAPLN4	rs141844019-T	0.0109	2E-6		1.637	[1.37-1.90] unit increase	Affymetrix [7953600] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	9E-12		0.299619	[0.21-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	9E-12		0.299278	[0.21-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	1E-11		0.298303	[0.21-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	4E-12		0.304779	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	9E-10		0.268785	[0.18-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	2E-10		0.27997	[0.19-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	4E-11		0.290287	[0.2-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	1E-10		0.28241	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in IDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065429452	9E-12		0.299814	[0.21-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small LDL particle concentration	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	4E-12		0.305227	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial saturated fatty acids	4,348 individuals	NA	19p13.11		rs72999033-T	0.065492477	6E-11		0.290112	[0.2-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	2E-12		0.307618	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065429452	1E-10		0.28302	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium LDL particle concentration	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	5E-12		0.30283	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	19p13.11		rs72999033-T	0.065550723	1E-10		0.285869	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large LDL particle concentration	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	4E-12		0.304556	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	1E-10		0.281888	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	1E-10		0.281511	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	19p13.11		rs72999033-T	0.065504873	1E-12		0.314044	[0.23-0.4] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial esterified cholesterol	4,348 individuals	NA	19p13.11		rs72999033-T	0.065611957	9E-12		0.301857	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	2E-9		0.265452	[0.18-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065414401	2E-10		0.278971	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large LDL	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	3E-12		0.306519	[0.22-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	19p13.11		rs72999033-T	0.065399356	1E-12		0.31236	[0.23-0.4] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066579805	2E-10		0.265605	[0.18-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066551659	1E-10		0.270602	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	5E-11		0.275874	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	6E-12		0.288229	[0.21-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066537489	2E-11		0.282147	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066579805	1E-8		0.240844	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066551659	2E-9		0.251897	[0.17-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	2E-10		0.265435	[0.18-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	1E-9		0.255349	[0.17-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066474075	3E-11		0.278231	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small LDL particle concentration	4,734 individuals	NA	19p13.11		rs72999033-T	0.066579805	9E-11		0.272103	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	1E-11		0.285545	[0.2-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066474075	7E-11		0.274021	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium LDL particle concentration	4,734 individuals	NA	19p13.11		rs72999033-T	0.066551659	6E-11		0.274398	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	19p13.11		rs72999033-T	0.066481233	2E-10		0.268507	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	2E-11		0.282521	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066537489	1E-12		0.297748	[0.22-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066579805	2E-8		0.237118	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066551659	6E-9		0.243678	[0.16-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066474075	3E-8		0.231697	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	19p13.11		rs72999033-T	0.06665774	5E-11		0.276108	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066579805	9E-9		0.241147	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066551659	1E-9		0.253705	[0.17-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large LDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	4E-11		0.277447	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	19p13.11		rs72999033-T	0.066474075	3E-12		0.292593	[0.21-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	19p13.11		rs72999033-T	0.066509485	2E-12		0.295657	[0.21-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19p13.11		rs72999033-T	NR	2E-26		0.1212	[0.099-0.144] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19p13.11		rs72999033-T	NR	7E-11		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
732	chr19	19366631	19366632	rs72999033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19p13.11		rs72999033-T	NR	1E-19		0.0441	[0.034-0.054] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
732	chr19	19366631	19366632	rs72999033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19p13.11	HAPLN4	rs72999033-T	0.064312	3E-15		0.035705883	[0.027-0.045] unit increase	Affymetrix [93095623] (imputed)	N
732	chr19	19366631	19366632	rs72999033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs72999033-T	0.0503084	5E-16				Affymetrix, Illumina [24332387] (imputed)	N
732	chr19	19366631	19366632	rs72999033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p13.11		rs72999033-?	NR	2E-16				NR [~ 8900000] (imputed)	N
732	chr19	19366631	19366632	rs72999033	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	19p13.11	CILP	rs72999033-T	0.06	1E-16	(Total cholesterol in medium VLDL)	0.18	[0.14-0.22] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
732	chr19	19366642	19366643	rs17216041	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p13.11		rs17216041-A	0.16	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
732	chr19	19368309	19368310	rs56144632	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p13.11	NR	rs56144632-A	0.1581	2E-10				NR [9056863] (imputed)	N
732	chr19	19370340	19370344	rs150641967	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	19p13.11		rs150641967-T	0.088124192843118	1E-7		0.0419723	[0.026-0.058] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
732	chr19	19370340	19370344	rs150641967	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.11	HAPLN4	rs150641967-?		7E-32		0.1329	[0.11-0.16] unit increase	Illumina [31500000] (imputed)	N
732	chr19	19370340	19370344	rs150641967	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.11	HAPLN4	rs150641967-?		5E-21		0.1052	[0.083-0.127] unit increase	Illumina [31500000] (imputed)	N
732	chr19	19370340	19370344	rs150641967	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Very low density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19p13.11	CILP2	rs150641967-T	0.075	1E-8		0.282	[0.18-0.38] unit decrease	Illumina [at least 13541454] (imputed)	N
732	chr19	19370340	19370344	rs150641967	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Triglyceride levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19p13.11	CILP2	rs150641967-T	0.074	2E-8		0.278	[0.18-0.38] unit decrease	Illumina [at least 13541454] (imputed)	N
732	chr19	19370340	19370344	rs150641967	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Total cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19p13.11	CILP2	rs150641967-T	0.074	8E-11		0.322	[0.23-0.41] unit decrease	Illumina [at least 13541454] (imputed)	N
732	chr19	19370340	19370344	rs150641967	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Low density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19p13.11	CILP2	rs150641967-T	0.075	3E-11		0.326	[0.23-0.42] unit decrease	Illumina [at least 13541454] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	8E-28		0.086276	[0.071-0.102] unit increase	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927605	7E-14		0.0553064	[0.041-0.07] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	9E-17		0.0633878	[0.048-0.078] unit increase	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	2E-8		0.0406156	[0.026-0.055] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927927	9E-18		0.0688619	[0.053-0.085] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	5E-9		0.0415119	[0.028-0.055] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	1E-15		0.0609735	[0.046-0.076] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	4E-8		0.0388995	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19p13.11		rs756350040-TGACA	0.927613	2E-10		0.0456379	[0.032-0.06] unit decrease	NR [11722792] (imputed)	N
732	chr19	19370340	19370340	rs756350040	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	19p13.11		rs756350040-T	0.07	9E-20		0.058	[0.045-0.071] unit decrease	NR [8806780] (imputed)	N
732	chr19	19370340	19370340	rs756350040	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	19p13.11		rs756350040-T	0.07	2E-10		0.031	[0.022-0.04] unit increase	NR [6098063] (imputed)	N
732	chr19	19372967	19372968	rs10403273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19p13.11		rs10403273-?	NR	2E-13				NR [~ 8900000] (imputed)	N
732	chr19	19374060	19374061	rs8105094	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19p13.11		rs8105094-C	0.832569	2E-10		0.0334709	[0.023-0.044] unit increase	NR [11722792] (imputed)	N
732	chr19	19374067	19374068	rs8105984	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs8105984-T	0.83257	5E-9		0.0304385	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
732	chr19	19376218	19376219	rs547413352	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs547413352-?	NR	5E-26		0.252	[0.2-0.3] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19378670	19378671	rs998732	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19p13.11	NA	rs998732-A	0.8343	1E-12		0.0165	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-58		0.12676	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925593	3E-19		0.0661756	[0.052-0.081] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	4E-10		0.0462852	[0.032-0.061] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	8E-44		0.104411	[0.09-0.119] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-38		0.0977842	[0.083-0.113] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-66		0.131015	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-60		0.123566	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-50		0.113266	[0.098-0.128] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-47		0.109371	[0.094-0.124] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-45		0.105948	[0.091-0.121] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-50		0.11249	[0.098-0.127] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-50		0.116036	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-45		0.111197	[0.096-0.127] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-29		0.0884748	[0.073-0.104] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-72		0.140114	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-45		0.111477	[0.096-0.127] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	4E-60		0.126461	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-60		0.124873	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	7E-36		0.0972719	[0.082-0.113] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-61		0.127241	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-40		0.104254	[0.089-0.12] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	7E-31		0.0876817	[0.073-0.103] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-47		0.110237	[0.095-0.125] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	2E-72		0.139935	[0.12-0.16] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-35		0.0932778	[0.078-0.108] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-46		0.11174	[0.096-0.127] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-38		0.0986602	[0.084-0.114] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	2E-18		0.0645666	[0.05-0.079] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-51		0.118025	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	4E-81		0.144499	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	2E-68		0.132116	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	9E-9		0.0437276	[0.029-0.059] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	4E-89		0.152986	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-35		0.0970243	[0.082-0.112] unit decrease	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-50		0.113497	[0.099-0.128] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-52		0.119276	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	8E-35		0.0961566	[0.081-0.111] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-28		0.0859811	[0.071-0.101] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	8E-65		0.133402	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-44		0.109994	[0.095-0.125] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-53		0.116501	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-34		0.0952514	[0.08-0.111] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-61		0.127577	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-38		0.101624	[0.086-0.117] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-30		0.0862887	[0.071-0.101] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	1E-62		0.1284	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	3E-116		0.172929	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	5E-46		0.110032	[0.095-0.125] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-39		0.102066	[0.087-0.117] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-13		0.056681	[0.041-0.072] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-54		0.117996	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-46		0.112646	[0.097-0.128] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-21		0.0740868	[0.059-0.089] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-25		0.0807326	[0.066-0.096] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-59		0.127732	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-27		0.0849664	[0.07-0.1] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-57		0.12166	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-24		0.0786471	[0.064-0.094] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-62		0.13003	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-25		0.0806667	[0.065-0.096] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-20		0.070486	[0.056-0.085] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	1E-57		0.119759	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925621	6E-18		0.0644474	[0.05-0.079] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	4E-48		0.110093	[0.095-0.125] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-48		0.113301	[0.098-0.128] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	4E-42		0.106868	[0.091-0.122] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-26		0.0843503	[0.069-0.1] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-66		0.134969	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-37		0.101018	[0.086-0.116] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-56		0.120146	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-49		0.11484	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-56		0.123573	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-47		0.112887	[0.098-0.128] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-34		0.0955365	[0.08-0.111] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	7E-36		0.0976272	[0.082-0.113] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-48		0.114281	[0.099-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-28		0.0868203	[0.071-0.102] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-12		0.0510754	[0.036-0.066] unit decrease	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-62		0.128364	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-37		0.100537	[0.085-0.116] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-53		0.120415	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	5E-18		0.0683105	[0.053-0.084] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	6E-29		0.0869938	[0.072-0.102] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-49		0.11632	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-65		0.13194	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-38		0.0999904	[0.085-0.115] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-53		0.120764	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-44		0.108695	[0.093-0.124] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-29		0.0854001	[0.071-0.1] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-17		0.0673009	[0.052-0.083] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	1E-9		0.0448329	[0.03-0.059] unit decrease	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-59		0.124855	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-41		0.105835	[0.09-0.121] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-45		0.110978	[0.096-0.126] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-21		0.0745835	[0.059-0.09] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-43		0.108136	[0.093-0.123] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	2E-44		0.110051	[0.095-0.125] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	9E-63		0.128539	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-34		0.0948131	[0.08-0.11] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-27		0.0819405	[0.067-0.097] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19p13.11		rs58542926-C	0.925601	3E-48		0.114534	[0.099-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34957434	Haas ME	2021-12-01	Cell Genom	Machine learning enables new insights into genetic contributions to liver fat accumulation.	Liver fat	32,974 European ancestry individuals	7,479 European ancestry individuals			rs58542926-T	NR	3E-85		0.289	[0.26-0.32] unit increase	Affymetrix [9802892] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34902334	Trepo E	2021-12-11	Lancet Oncol	Common genetic variation in alcohol-related hepatocellular carcinoma: a case-control genome-wide association study.	Alcohol-related hepatocellular carcinoma	775 European ancestry cases, 1,332 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-T	0.08	6E-10		2.01	[1.61-2.50]	Illumina [7962325] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-T	NR	7E-17		0.2676	[0.2-0.33] unit increase	NR [6787908] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19p13.11		rs58542926-T	NR	1E-134		0.0934	[0.086-0.101] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	19p13.11		rs58542926-T	0.07873	4E-15		0.058552	[0.044-0.073] unit decrease	Illumina [13471903] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19p13.11		rs58542926-T	NR	1E-19		0.0336	[0.026-0.041] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19p13.11		rs58542926-T	NR	1E-42		0.0493	[0.042-0.056] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	19p13.11		rs58542926-T	0.0880837382093069	4E-8	(EA)	0.0482199	[0.031-0.065] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19p13.11		rs58542926-T	NR	4E-12		0.107672	[0.077-0.138] unit decrease	Affymetrix [87696910] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	2E-116		0.333	NR % increase	Affymetrix [9390170] (imputed)	N
732	chr19	19379548	19379549	rs58542926	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19p13.11	AC138430.4, TM6SF2	rs58542926-T	NR	4E-8		0.0293826	[0.019-0.04] unit increase	Affymetrix [319769] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19p13.11	TM6SF2	rs58542926-C	0.925238	2E-119		0.01705	[0.016-0.018] unit decrease	Affymetrix [13995440] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19p13.11	TM6SF2	rs58542926-C	0.92	3E-70		17.7	z-score increase	Affymetrix [4311822] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19p13.11	TM6SF2	rs58542926-T	0.075	9E-41		13.4	z-score increase	Affymetrix [4314223] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19p13.11	TM6SF2	rs58542926-T	0.075	1E-71		17.9	z-score increase	Affymetrix [4312306] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	2E-22		0.0448	[0.036-0.054] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	1E-134		0.1113	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	6E-259		0.1547	[0.15-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	5E-19		0.0402	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	7E-95		0.0931	[0.084-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	3E-16		0.0386	[0.029-0.048] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	3E-228		0.1453	[0.14-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	9E-12		0.0307	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	5E-43		0.0667	[0.057-0.076] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	4E-10		0.0281	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	2E-12		0.0317	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	1E-12		0.0336	[0.024-0.043] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	3E-18		0.0393	[0.03-0.048] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	7E-60		0.0737	[0.065-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	1E-45		0.064	[0.055-0.073] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	1E-161		0.1224	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	NR	6E-86		0.0886	[0.08-0.097] unit increase	Affymetrix [9000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?		3E-32		0.0823	[0.069-0.096] unit increase	Illumina [31500000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?		1E-13		0.0496	[0.036-0.063] unit decrease	Illumina [31500000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	33310085	Emdin CA	2020-12-10	Gastroenterology	Association of genetic variation with cirrhosis: a multi-trait genome-wide association and gene-environment interaction study.	Cirrhosis (multi-trait analysis)	4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements	3,554 European, African, Asian and unknown ancestry cases, 343,286 European, African, Asian and unknown ancestry controls	19p13.11	TM6SF2	rs58542926-T	0.07	3E-83				Affymetrix, Illumina [3163456] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19p13.11	TM6SF2	rs58542926-T	0.074789	3E-14		0.032004	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19p13.11	TM6SF2	rs58542926-T	0.074784	4E-17		0.03527309	[0.027-0.044] unit increase	Affymetrix [93095623] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	0.0743459	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19p13.11	NR	rs58542926-T	0.074553	1E-15		0.028746	[0.022-0.036] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-T	0.0743341	6E-16				Affymetrix, Illumina [24558453] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19p13.11	NR	rs58542926-T	0.074518	1E-18		0.031578	[0.025-0.039] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19p13.11	NR	rs58542926-C	0.9245	5E-25		0.089	[0.072-0.106] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19p13.11	NR	rs58542926-C	0.9258	2E-23		0.0721	[0.058-0.086] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-T		2E-10		0.026	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-?	NR	2E-7		1.606	[1.344-1.919]	Illumina [7412560] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-T	0.07	1E-8		0.124	[0.081-0.167] unit increase	Affymetrix [~ 12000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fat content (MRI proton density fat fraction measure)	14,440 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-T	0.926558	6E-37		0.206	[0.17-0.24] unit increase	Affymetrix [~ 12000000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs58542926-?	NR	1E-15		0.142	[0.11-0.18] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-C	0.925394	1E-162		0.102936	[0.096-0.11] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	4E-95		0.1024	[0.094-0.111] unit decrease	Affymetrix [5701386] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	3E-186		0.1369	[0.13-0.15] unit decrease	Affymetrix [5701386] (imputed)	N
732	chr19	19379548	19379549	rs58542926	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19p13.11	NR	rs58542926-T	0.075847	9E-19		0.032488	[0.025-0.04] unit increase	Affymetrix [16668957] (imputed)	N
732	chr19	19379548	19379549	rs58542926	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19p13.11	NR	rs58542926-C	0.924821	1E-25		0.0388777	[0.032-0.046] unit decrease	NR [NR]	N
732	chr19	19379548	19379549	rs58542926	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	19p13.11	SUGP1	rs58542926-?	NR	5E-32		0.04984	[0.041-0.059] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
732	chr19	19379548	19379549	rs58542926	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	19p13.11	SUGP1	rs58542926-?	NR	5E-30		0.05091	[0.042-0.06] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
732	chr19	19379548	19379549	rs58542926	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs58542926-?	NR	1E-15		0.07220495	[0.055-0.09] unit decrease	Illumina [31978265] (imputed)	N
732	chr19	19379548	19379549	rs58542926	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.11	NR	rs58542926-?	NR	1E-8		4.359252	[2.87-5.85] unit decrease	Illumina [32003504] (imputed)	N
732	chr19	19379548	19379549	rs58542926	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-T	0.074933	2E-31		0.12420776	[0.1-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
732	chr19	19379548	19379549	rs58542926	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	19p13.11	NR	rs58542926-T	0.0692	3E-72				Affymetrix, Illumina [at least 2500000] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-T	0.079	1E-12		1.09	[1.06-1.12]	Affymetrix, Illumina [247470]	N
732	chr19	19379548	19379549	rs58542926	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	19p13.11	TM6SF2	rs58542926-T	0.0755	3E-15		1.09	[1.06-1.11]	Affymetrix, Illumina [247470]	N
732	chr19	19379548	19379549	rs58542926	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	19p13.11	TM6SF2	rs58542926-T	0.079	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [247470]	N
732	chr19	19379548	19379549	rs58542926	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	19p13.11	TM6SF2	rs58542926-T	0.0755	5E-12		1.07	[1.05-1.10]	Affymetrix, Illumina [247470]	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	NR	7E-47		0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	0.947	5E-7	(Hispanic)	0.156	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	0.927	4E-37	(EA)	0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	NR	2E-30		0.095	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	0.927	3E-27	(EA)	0.097	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	NR	1E-15		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs58542926-C	0.927	6E-15	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
732	chr19	19379548	19379549	rs58542926	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	9E-14		0.06384	[0.047-0.081] unit decrease novel	Illumina [6108953] (imputed)	N
732	chr19	19379548	19379549	rs58542926	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	19p13.11	CILP2	rs58542926-C	0.92	2E-25		0.116	[0.094-0.138] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
732	chr19	19379548	19379549	rs58542926	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	19p13.11	CILP2	rs58542926-C	0.92	8E-29		0.122	[0.1-0.14] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
732	chr19	19379548	19379549	rs58542926	24531328	Kozlitina J	2014-02-16	Nat Genet	Exome-wide association study identifies a TM6SF2 variant that confers susceptibility to nonalcoholic fatty liver disease.	Nonalcoholic fatty liver disease	2,448 African American individuals, 1,365 European ancestry individuals, 753 Hispanic individuals, 141 other ancestries individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	6E-8				Illumina [138374]	N
732	chr19	19379548	19379549	rs58542926	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Vitamin levels	up to 1,200 European ancestry individuals	NA	19p13.11	TM6SF2	rs58542926-?	NR	1E-8	(Vitamin E alpha tocopherol)			Illumina [up to 10879115] (imputed)	N
732	chr19	19380512	19380513	rs187429064	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19p13.11		rs187429064-A	0.988734	5E-12		0.065	[0.047-0.083] unit increase	NR [7250403] (imputed)	N
732	chr19	19380512	19380513	rs187429064	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19p13.11	TM6SF2	rs187429064-G	0.0111654	2E-9		0.16027164	[0.11-0.21] unit decrease	Affymetrix [7288503] (imputed)	N
732	chr19	19380567	19380568	rs142056540	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs142056540-?	NR	2E-7		0.354	[0.22-0.49] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19381727	19381728	rs2074302	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19p13.11	RFXANK, NCAN, HAPLN4, SUGP1, MAU2, GATAD2A, TSSK6, NDUFA13, YJEFN3, CILP2, PBX4, LPAR2, GMIP, ATP13A1, ZNF101, ZNF14	rs2074302-?		4E-29				Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19381939	19381940	rs2074304	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.11	HAPLN4, TM6SF2	rs2074304-C	0.0514519	1E-10	(cholesterol)	0.331	[0.23-0.43] unit decrease	Illumina [13039987] (imputed)	N
732	chr19	19381939	19381940	rs2074304	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs2074304-?	NR	7E-15		0.181	[0.14-0.23] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19388056	19388057	rs2074551	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	19p13.11	SUGP1	rs2074551-C	0.2733	7E-9		0.0105	[0.007-0.014] unit increase	Affymetrix [~ 7740000] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	3E-13		0.0546567	[0.04-0.069] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	3E-24		0.0774859	[0.063-0.092] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	6E-35		0.0935681	[0.079-0.108] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	1E-23		0.0756179	[0.061-0.09] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	2E-27		0.0830788	[0.068-0.098] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	5E-20		0.0703567	[0.055-0.085] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	5E-25		0.0792422	[0.064-0.094] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	9E-28		0.0836165	[0.069-0.099] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	1E-25		0.0798969	[0.065-0.095] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	1E-17		0.0655135	[0.051-0.081] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	8E-38		0.0983551	[0.083-0.113] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	4E-16		0.0600626	[0.046-0.074] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924468	1E-33		0.0887314	[0.074-0.103] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924468	3E-52		0.117425	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	8E-38		0.0985967	[0.084-0.114] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	6E-31		0.086678	[0.072-0.101] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924468	5E-38		0.095246	[0.081-0.11] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924468	1E-30		0.0843266	[0.07-0.099] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924468	8E-53		0.11801	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	4E-36		0.0960123	[0.081-0.111] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	1E-33		0.0930341	[0.078-0.108] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	1E-21		0.0722634	[0.057-0.087] unit decrease	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	8E-43		0.103547	[0.089-0.118] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	5E-31		0.0877501	[0.073-0.103] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs8107974-A	0.924448	2E-38		0.0976197	[0.083-0.112] unit increase	NR [11722792] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Type 2 diabetes	9,486 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	19p13.11	TM6SF2 & SUGP1	rs8107974-T	0.0988722	7E-6		1.252	[1.135 - 1.381]	Illumina [5399457] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in chylomicrons and extremely large VLDL	4,348 individuals	NA	19p13.11		rs8107974-T	0.073091519	5E-8		0.230111	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in chylomicrons and extremely large VLDL	4,348 individuals	NA	19p13.11		rs8107974-T	0.073091519	1E-9		0.255464	[0.17-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large VLDL	4,734 individuals	NA	19p13.11		rs8107974-T	0.070700972	2E-8		0.241773	[0.16-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in chylomicrons and extremely large VLDL	4,734 individuals	NA	19p13.11		rs8107974-T	0.06953181	3E-8		0.247368	[0.16-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19388499	19388500	rs8107974	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glycoprotein acetyls (mainly a1-acid glycoprotein)	4,734 individuals	NA	19p13.11		rs8107974-T	0.075034016	4E-9		0.229342	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
732	chr19	19388499	19388500	rs8107974	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	19p13.11	SUGP1, MAU2, CILP2	rs8107974-T	0.073	8E-9		0.21	[0.14-0.28] unit decrease	Illumina [NR] (imputed)	N
732	chr19	19388499	19388500	rs8107974	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	19p13.11	SUGP1	rs8107974-?	NR	1E-7		1.609	[1.348-1.920]	Illumina [7412560] (imputed)	N
732	chr19	19388499	19388500	rs8107974	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19p13.11		rs8107974-?	NR	1E-20		0.0355672	[0.028-0.043] unit increase	NR [6912294] (imputed)	N
732	chr19	19388499	19388500	rs8107974	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.11	SUGP1	rs8107974-A	0.924237	2E-158		0.105172	[0.097-0.113] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19388499	19388500	rs8107974	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.11	SUGP1	rs8107974-A	0.924245	3E-121		0.0909955	[0.083-0.099] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19388499	19388500	rs8107974	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.11	TM6SF2	rs8107974-T	0.0769	3E-15		1.1	[1.07-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
732	chr19	19391850	19391851	rs6511027	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19p13.11	NCAN, HAPLN4, TM6SF2, SUGP1, MAU2, GATAD2A, TSSK6, NDUFA13, YJEFN3, CTC-260F20.3, CILP2, PBX4, LPAR2	rs6511027-?		3E-10				NR [7428630] (imputed)	N
732	chr19	19391850	19391851	rs6511027	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19p13.11	NA	rs6511027-T	0.1686	1E-14		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
732	chr19	19393713	19393714	rs8100204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19p13.11		rs8100204-A	NR	2E-11		0.0552	[0.039-0.071] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	2E-34		0.0938864	[0.079-0.109] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	5E-35		0.0945998	[0.08-0.11] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926856	2E-25		0.0770487	[0.063-0.092] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	8E-18		0.0651439	[0.05-0.08] unit decrease	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	9E-33		0.0912192	[0.076-0.106] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	4E-34		0.0929796	[0.078-0.108] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	3E-38		0.102276	[0.087-0.118] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19p13.11		rs200210321-A	0.926834	4E-43		0.102207	[0.088-0.117] unit increase	NR [11722792] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19p13.11		rs200210321-AG	NR	8E-151		0.1161	[0.11-0.12] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19p13.11		rs200210321-AG	NR	2E-91		0.0904	[0.082-0.099] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19p13.11		rs200210321-AG	NR	6E-126		0.1077	[0.099-0.117] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19p13.11		rs200210321-AG	NR	3E-9		0.0215	[0.014-0.029] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19p13.11	TM6SF2	rs200210321-?	NR	9E-53		0.0084	[0.0074-0.0094] unit increase	Affymetrix [21347608] (imputed)	N
732	chr19	19393890	19393890	rs200210321	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19p13.11	TM6SF2	rs200210321-?	NR	9E-107		0.0181	[0.017-0.02] unit increase	Affymetrix [21347608] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	19p13.11	SUGP1	rs200210321-?	NR	2E-7		5.226	NR unit increase	Illumina [up to 1520000] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19p13.11		rs200210321-?	0.0734	2E-6		0.004323	unit increase	NR [6200000] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	19p13.11		rs200210321-?	0.0734	8E-16		0.01582	unit increase	NR [6200000] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19p13.11		rs200210321-?	0.0734	1E-8		0.01512	unit increase	NR [6200000] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	19p13.11		rs200210321-?	0.0734	6E-18		0.02378	unit increase	NR [6200000] (imputed)	N
732	chr19	19393890	19393890	rs200210321	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs200210321-?	NR	8E-9		0.098	[0.065-0.131] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
732	chr19	19393890	19393890	rs200210321	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	19p13.11	SUGP1	rs200210321-A	0.93	4E-9		0.602	[0.4-0.8] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19394367	19394368	rs138295924	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.11	SUGP1	rs138295924-A	0.9553	8E-42		0.098	[0.084-0.112] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
732	chr19	19394639	19394640	rs56212061	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19p13.11	HAPLN4	rs56212061-C	0.8521875	1E-6	(HAPLN4, 6455_52_3)	0.16702877	[0.099-0.235] unit decrease	Illumina [> 1000000] (imputed)	N
732	chr19	19396615	19396616	rs188247550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	19p13.11		rs188247550-T	NR	3E-12		1.7863	[1.28-2.29] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
732	chr19	19396615	19396616	rs188247550	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	19p13.11	TM6SF2	rs188247550-?	NR	1E-26	(conditional)	0.357	NR % increase	Affymetrix [9390170] (imputed)	N
732	chr19	19396615	19396616	rs188247550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	SUGP1	rs188247550-T	0.013185	2E-9		0.061953656	[0.042-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr19	19396615	19396616	rs188247550	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p13.11	SUGP1	rs188247550-C	0.986883	2E-48		0.133886	[0.12-0.15] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19396615	19396616	rs188247550	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p13.11	SUGP1	rs188247550-C	0.986885	9E-37		0.120683	[0.1-0.14] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19396615	19396616	rs188247550	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19p13.11	SUGP1	rs188247550-C	0.986903	2E-28		0.104507	[0.086-0.123] unit increase	Affymetrix [NR] (imputed)	N
732	chr19	19396615	19396616	rs188247550	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19p13.11	TM6SF2	rs188247550-T	0.0195	5E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [~ 27000000] (imputed)	N
733	chr19	19406868	19406869	rs12979148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19p13.11		rs12979148-C	NR	3E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
733	chr19	19407717	19407718	rs10401969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19p13.11		rs10401969-T	0.923999	8E-10		0.0454161	[0.031-0.06] unit increase	NR [11722792] (imputed)	N
733	chr19	19407717	19407718	rs10401969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19p13.11		rs10401969-T	0.923999	2E-13		0.0550856	[0.04-0.07] unit decrease	NR [11722792] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	19p13.11	SUGP1	rs10401969-?	NR	2E-22		0.2744911	[0.21-0.34] unit decrease	NR [6787908] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	19p13.11		rs10401969-C	0.073269151	1E-15		0.327658	[0.25-0.41] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.074270798	2E-8		0.234337	[0.15-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.073269151	2E-13		0.299346	[0.22-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.073269151	1E-9		0.248772	[0.17-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	7E-11		0.266822	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.07328601	7E-12		0.280193	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	1E-11		0.277179	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.073269151	2E-15		0.32552	[0.25-0.41] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small VLDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	3E-14		0.311159	[0.23-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in VLDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	7E-13		0.293222	[0.21-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-3 fatty acids	4,348 individuals	NA	19p13.11		rs10401969-C	0.073162427	4E-10		0.257506	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small VLDL	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	3E-15		0.321557	[0.24-0.4] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein B	4,348 individuals	NA	19p13.11		rs10401969-C	0.0732523	3E-16		0.333647	[0.25-0.41] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	19p13.11		rs10401969-C	0.074176036	2E-15		0.310481	[0.23-0.39] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074176036	1E-11		0.265739	[0.19-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074223092	5E-14		0.294503	[0.22-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074144698	1E-11		0.265651	[0.19-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074117361	5E-13		0.282877	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074144698	5E-12		0.2708	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in HDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074144698	4E-11		0.258223	[0.18-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074176036	5E-15		0.306468	[0.23-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	2E-13		0.286535	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	1E-14		0.302809	[0.23-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.0742074	2E-14		0.298238	[0.22-0.37] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074144698	4E-15		0.307075	[0.23-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small VLDL particle concentration	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	5E-13		0.282454	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	7E-13		0.280848	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-3 fatty acids	4,734 individuals	NA	19p13.11		rs10401969-C	0.074089966	2E-8		0.218598	[0.14-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	3E-13		0.28627	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074176036	4E-11		0.258462	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.074254495	2E-14		0.299788	[0.22-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium VLDL	4,734 individuals	NA	19p13.11		rs10401969-C	0.0742074	3E-15		0.308388	[0.23-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19407717	19407718	rs10401969	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	19p13.11	SUGP1	rs10401969-T	NR	5E-11		0.4728	[0.33-0.61] unit decrease	Illumina [9377111] (imputed)	N
733	chr19	19407717	19407718	rs10401969	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19p13.11		rs10401969-?	0.07674	9E-6		0.003977	unit increase	NR [6200000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	19p13.11		rs10401969-?	0.07674	3E-16		0.01568	unit increase	NR [6200000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19p13.11		rs10401969-?	0.07674	4E-8		0.01433	unit increase	NR [6200000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	19p13.11		rs10401969-?	0.07674	1E-18		0.0238	unit increase	NR [6200000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs10401969-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	19p13.11		rs10401969-C	0.07	2E-14		8.63	[6.42-10.84] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	19p13.11		rs10401969-C	0.07	5E-15		4.53	[3.39-5.67] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		19p13.11		rs10401969-C	0.07	3E-8		2.95	[1.91-3.99] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs10401969-?	NR	5E-8		0.03511636	[0.023-0.048] unit decrease	Illumina [31978265] (imputed)	N
733	chr19	19407717	19407718	rs10401969	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	19p13.11		rs10401969-T	0.9238	1E-10	(EA)	0.0339	[0.024-0.044] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
733	chr19	19407717	19407718	rs10401969	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19p13.11		rs10401969-T	0.923	6E-6	(EA)	1.6159	[0.92-2.31] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
733	chr19	19407717	19407718	rs10401969	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19p13.11	NR	rs10401969-T	0.9221	5E-9		0.0191	[0.013-0.026] unit decrease	NR [~ 27400000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	19p13.11	SUGP1	rs10401969-C	0.0765857554285534	4E-12		0.0921	[0.066-0.118] unit increase	NR [5035015] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	NR	1E-44		0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	0.938	1E-6	(Hispanic)	0.139	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	0.925	7E-38	(EA)	0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	NR	1E-29		0.089	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	0.925	3E-27	(EA)	0.095	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	NR	2E-15		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs10401969-T	0.925	7E-15	(EA)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19407717	19407718	rs10401969	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	19p13.11	CILP2	rs10401969-T	0.929	5E-71	(Trans-ethnic initial)	0.121	[0.11-0.13] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	19p13.11	CILP2	rs10401969-T	0.929	5E-75	(Trans-ethnic initial)	0.137	[0.12-0.15] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	19p13.11	CILP2	rs10401969-T	0.929	6E-51	(Trans-ethnic initial)	0.118	[0.1-0.13] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19p13.11	NR	rs10401969-?	NR	4E-11				Affymetrix [NR]	N
733	chr19	19407717	19407718	rs10401969	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19p13.11	NR	rs10401969-?	NR	2E-11				Affymetrix [NR]	N
733	chr19	19407717	19407718	rs10401969	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	19p13.11	SF4	rs10401969-T	NR	2E-32				NR [25015711] (imputed)	N
733	chr19	19407717	19407718	rs10401969	26482880	Buch S	2015-10-19	Nat Genet	A genome-wide association study confirms PNPLA3 and identifies TM6SF2 and MBOAT7 as risk loci for alcohol-related cirrhosis.	Cirrhosis (alcohol related)	712 European ancestry cases, 1,426 European ancestry alchocol dependent controls	1,148 European ancestry cases, 922 European ancestry alchocol dependent controls	19p13.11	TM6SF2	rs10401969-C	0.08	8E-10		1.72	[1.44-2.04]	Illumina [6770425] (imputed)	N
733	chr19	19407717	19407718	rs10401969	25246029	DiStefano JK	2014-09-23	Acta Diabetol	Genome-wide analysis of hepatic lipid content in extreme obesity.	Hepatic lipid content in extreme obesity	1,868 European ancestry cases	NA	19p13.11	SUGP1	rs10401969-?	NR	3E-7				Illumina [605718]	N
733	chr19	19407717	19407718	rs10401969	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	CILP2	rs10401969-C	0.09	1E-69		0.121	[NR] mg/dL decrease	NR [NR] (imputed)	N
733	chr19	19407717	19407718	rs10401969	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	CILP2	rs10401969-C	0.09	3E-54		0.118	[NR] unit decrease	NR [NR] (imputed)	N
733	chr19	19407717	19407718	rs10401969	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19p13.11	CILP2	rs10401969-C	0.09	4E-77		0.137	[NR] unit decrease	NR [NR] (imputed)	N
733	chr19	19407717	19407718	rs10401969	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	19p13.11	CILP2	rs10401969-C	NR	3E-7	(men)	1.15	[1.09-1.21]	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	19p13.11	CILP2	rs10401969-C	0.080536977769365	7E-9		1.13	[1.09-1.18]	Affymetrix, Illumina [up to 2500000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.11	SF4, CILP2	rs10401969-T	0.91	1E-11		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
733	chr19	19407717	19407718	rs10401969	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	19p13.11	CSPG3, CILP2, PBX4	rs10401969-C	0.07	2E-29		7.83	[6.22-9.44] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19p13.11	CSPG3, CILP2, PBX4	rs10401969-C	0.07	7E-22		3.11	[2.37-3.85] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19p13.11	CSPG3, CILP2, PBX4	rs10401969-C	0.07	3E-38		4.74	[3.92-5.56] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
733	chr19	19407717	19407718	rs10401969	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.11	NCAN, CILP2, PBX4	rs10401969-C	0.06	2E-8		0.05	[-0.03-0.13] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
733	chr19	19410749	19410750	rs117961479	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19p13.11	NR	rs117961479-?	NR	1E-6		0.129	[0.078-0.18] unit decrease	Illumina [1770809] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very small VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073282379	9E-10		0.250643	[0.17-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium HDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073282379	5E-9		0.239224	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in HDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	2E-9		0.245618	[0.17-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	1E-10		0.262588	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	4E-10		0.255125	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small VLDL particle concentration	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	4E-10		0.255401	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	2E-10		0.259494	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	2E-8		0.23146	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial monounsaturated fatty acids (16:1, 18:1)	4,348 individuals	NA	19p13.11		rs739846-A	0.073115042	5E-10		0.25696	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	6E-11		0.267583	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium VLDL	4,348 individuals	NA	19p13.11		rs739846-A	0.073265524	5E-12		0.282861	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.07426941	7E-11		0.255196	[0.18-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.074222304	3E-11		0.259982	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.07415959	2E-11		0.26316	[0.19-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.074222304	2E-12		0.27668	[0.2-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.074222304	5E-13		0.283195	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium VLDL particle concentration	4,734 individuals	NA	19p13.11		rs739846-A	0.074222304	3E-12		0.274035	[0.2-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium VLDL	4,734 individuals	NA	19p13.11		rs739846-A	0.074222304	1E-12		0.277646	[0.2-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19419070	19419071	rs739846	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Fasting triglyceride levels	5,630 individuals	NA	19p13.11	SUGP1, MAU2, CILP2	rs739846-A	0.072	2E-10		0.23	[0.16-0.3] unit decrease	Illumina [NR] (imputed)	N
733	chr19	19419070	19419071	rs739846	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	19p13.11		rs739846-?	0.07608	3E-16		0.01579	unit increase	NR [6200000] (imputed)	N
733	chr19	19419070	19419071	rs739846	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19p13.11		rs739846-?	0.07608	3E-8		0.01451	unit increase	NR [6200000] (imputed)	N
733	chr19	19419070	19419071	rs739846	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	19p13.11		rs739846-?	0.07608	1E-18		0.02386	unit increase	NR [6200000] (imputed)	N
733	chr19	19419335	19419336	rs188861306	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19p13.11		rs188861306-?	NR	6E-8		0.495	[0.32-0.67] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
733	chr19	19423816	19423817	rs2315024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19p13.11	SUGP1	rs2315024-A	0.334422	1E-19		0.021594068	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr19	19425024	19425025	rs57962361	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	19p13.11	SUGP1	rs57962361-?	NR	9E-7		4.919	NR unit decrease	Illumina [up to 1520000] (imputed)	N
733	chr19	19425140	19425141	rs12459676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19p13.11		rs12459676-?	NR	8E-9				NR [~ 8900000] (imputed)	N
733	chr19	19425144	19425145	rs112253053	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19p13.11	SUGP1	rs112253053-T	0.839148	2E-13		0.013771	[0.01-0.017] unit increase	Affymetrix [12370749]	N
733	chr19	19425144	19425145	rs112253053	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs112253053-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
733	chr19	19432290	19432291	rs140868651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19p13.11		rs140868651-A	NR	5E-13		0.0349	[0.025-0.044] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
733	chr19	19432290	19432291	rs140868651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19p13.11		rs140868651-A	NR	7E-82		0.0833	[0.075-0.092] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
733	chr19	19432290	19432291	rs140868651	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.11	MAU2	rs140868651-?	0.0608	4E-53		0.0924	[0.081-0.104] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
733	chr19	19435875	19435876	rs4239639	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	19p13.11	NR	rs4239639-A	0.827	1E-8		0.08104238	[0.053-0.109] unit decrease	NR [NR]	N
733	chr19	19440065	19440066	rs3764567	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19p13.11	MAU2	rs3764567-T	NR	4E-8		1.045	[1.03-1.06]	Illumina [6627481] (imputed)	N
733	chr19	19440427	19440428	rs1009136	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	19p13.11	MAU2	rs1009136-A	0.295	3E-9		1.25	NR	Illumina [at least 870261] (imputed)	N
733	chr19	19443985	19443986	rs2011503	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs2011503-?	NR	2E-9				NR [2625067]	N
733	chr19	19443985	19443986	rs2011503	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs anorexia nervosa (ordinary least squares (OLS))	20,352 bipolar disorder cases, 16,992 anorexia nervosa cases	NA			rs2011503-?	NR	2E-8		0.0205	NR unit decrease	NR [5569514] (imputed)	N
733	chr19	19443985	19443986	rs2011503	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	20,352 bipolar disorder cases, 4,819 Tourette's syndrome cases	NA			rs2011503-?	NR	6E-9		0.0225	NR unit decrease	NR [6254473] (imputed)	N
733	chr19	19443985	19443986	rs2011503	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA		NCAN	rs2011503-?	NR	9E-8		1.15	[NR]	Illumina [2267487] (imputed)	N
733	chr19	19446935	19446936	rs769267	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.11	NR	rs769267-?	NR	5E-7		0.0434	[0.027-0.06] unit increase	Illumina [at least 560000] (imputed)	N
733	chr19	19455749	19455750	rs8102280	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs8102280-?	NR	5E-23		0.1118726	[0.09-0.134] unit decrease	Illumina [31978265] (imputed)	N
733	chr19	19455749	19455750	rs8102280	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.11	NR	rs8102280-?	NR	3E-13		7.044314	[5.15-8.93] unit decrease	Illumina [32003504] (imputed)	N
733	chr19	19455749	19455750	rs8102280	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.11	NR	rs8102280-?	NR	2E-8		4.709046	[3.06-6.36] unit decrease	Illumina [31808917] (imputed)	N
733	chr19	19455749	19455750	rs8102280	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs8102280-G	0.955	3E-6	(Hispanic)	0.153	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19455749	19455750	rs8102280	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	19p13.11	NR	rs8102280-?	NR	2E-7		0.06227	[0.039-0.086] unit decrease novel	Illumina [6108953] (imputed)	N
733	chr19	19455749	19455750	rs8102280	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Triglycerides	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	19p13.11	MAU2	rs8102280-G	0.956	3E-18	(Hispanic)	0.252	[0.2-0.31] unit increase	Affymetrix [at least 370268] (imputed)	N
733	chr19	19456263	19456264	rs35824797	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	19p13.11	NR	rs35824797-?	NR	1E-7		0.04121847	[0.026-0.056] unit increase	Illumina [7519308] (imputed)	N
733	chr19	19456263	19456264	rs35824797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19p13.11	NR	rs35824797-C	0.92145	2E-15		0.0440261	[0.033-0.055] unit increase	Affymetrix [16577313] (imputed)	N
733	chr19	19456263	19456264	rs35824797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19p13.11	NR	rs35824797-C	0.921522	1E-11		0.0120116	[0.0078-0.0162] unit increase	Affymetrix [16582621] (imputed)	N
733	chr19	19456263	19456264	rs35824797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19p13.11	NR	rs35824797-C	0.921522	1E-14		0.015645	[0.011-0.02] unit increase	Affymetrix [16582614] (imputed)	N
733	chr19	19456916	19456917	rs58489806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs58489806-C	0.913584	3E-23		0.070387	[0.057-0.084] unit decrease	NR [11722792] (imputed)	N
733	chr19	19456916	19456917	rs58489806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs58489806-C	0.913584	1E-8		0.0407904	[0.027-0.055] unit decrease	NR [11722792] (imputed)	N
733	chr19	19456916	19456917	rs58489806	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19p13.11		rs58489806-C	0.913563	9E-10		0.0448465	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
733	chr19	19456916	19456917	rs58489806	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	19p13.11		rs58489806-?	NR	2E-8		0.00903633	[0.0059-0.0122] unit decrease	NR [NR]	N
733	chr19	19456916	19456917	rs58489806	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	19p13.11	MAU2	rs58489806-?	NR	3E-11		0.0827	NR L increase	Affymetrix [9390170] (imputed)	N
733	chr19	19456916	19456917	rs58489806	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19p13.11	NR	rs58489806-C	0.912819	5E-9		0.0120784	[0.0078-0.0164] unit increase	Affymetrix [16585854] (imputed)	N
733	chr19	19457234	19457235	rs34858588	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19p13.11	NR	rs34858588-C	0.921206	4E-10		0.0155256	[0.011-0.02] unit increase	Affymetrix [16578495] (imputed)	N
733	chr19	19457234	19457235	rs34858588	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19p13.11	NR	rs34858588-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
733	chr19	19457907	19457908	rs2905421	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.11		rs2905421-A	0.339	5E-15				Affymetrix [10369434] (imputed)	N
733	chr19	19460540	19460541	rs73001065	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease	2,181 European ancestry cases, 2,444 European ancestry controls	NA	19p13.11		rs73001065-?	NR	1E-8		0.0746081	[0.049-0.1] unit decrease	NR [NR]	N
733	chr19	19460540	19460541	rs73001065	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	19p13.11		rs73001065-C	0.070642745	4E-8		0.225534	[0.14-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
733	chr19	19460540	19460541	rs73001065	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	19p13.11		rs73001065-C	0.071	8E-30		1.41	[1.32-1.51]	Affymetrix [9723654] (imputed)	N
733	chr19	19460540	19460541	rs73001065	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	19p13.11		rs73001065-C	0.075	2E-15		0.1066	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
733	chr19	19460540	19460541	rs73001065	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs73001065-?	NR	2E-6		0.0593626	[0.035-0.084] unit decrease	Illumina [31978265] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	NR	3E-36		0.102	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	0.934	3E-32	(EA)	0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	NR	2E-24		0.091	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	0.934	1E-23	(EA)	0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	NR	2E-13		0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs73001065-G	0.934	2E-13	(EA)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
733	chr19	19460540	19460541	rs73001065	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	19p13.11	CILP2	rs73001065-G	0.93	3E-23		0.114	[0.09-0.138] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
733	chr19	19461106	19461106	rs60619538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.11	MAU2	rs60619538-GA	0.835	4E-14		0.03744309	[0.028-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
733	chr19	19467936	19467937	rs2285627	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19p13.11	MAU2	rs2285627-C	0.6675	1E-9		0.02261553	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
733	chr19	19468259	19468260	rs118029212	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.11	MAU2	rs118029212-C	0.939395	1E-10	(1-linolenoyl-GPC (18:3)*)	0.308	[0.21-0.4] unit increase	Illumina [13039987] (imputed)	N
733	chr19	19470598	19470599	rs144787624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs144787624-?	NR	5E-8				NR [~ 8900000] (imputed)	N
733	chr19	19473444	19473445	rs2905424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19p13.11	MAU2	rs2905424-C	0.651773	3E-37		0.029692028	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
733	chr19	19473444	19473445	rs2905424	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	19p13.11	CILP2, PBX4, MAU2, GMIP, LPAR2, MIR640, NCAN, GATAD2A, HAPLN4, YJEFN3, NDUFA13, SUGP1, TM6SF2, TSSK6	rs2905424-T	0.348	3E-9		1.092	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
733	chr19	19475087	19475088	rs2965199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19p13.11		rs2965199-?	NR	3E-45				NR [~ 8900000] (imputed)	N
733	chr19	19475716	19475717	rs2905425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs2905425-G	0.357701	4E-39				Affymetrix, Illumina [22063850] (imputed)	N
733	chr19	19477876	19477877	rs56255430	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCYOX1	5,340 Icelandic ancestry individuals	NA	19p13.11		rs56255430-C	0.0762	3E-14		0.244287	[0.18-0.31] unit decrease	Illumina [7506463] (imputed)	N
733	chr19	19477876	19477877	rs56255430	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	19p13.11	MAU2	rs56255430-A	0.918	6E-8		0.0027	[0.0015-0.0039] unit increase	Affymetrix [NR] (imputed)	N
733	chr19	19478021	19478022	rs2905426	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19p13.11		rs2905426-T	0.648978	1E-18		0.020697631	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr19	19478021	19478022	rs2905426	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	19p13.11	NR	rs2905426-?	NR	9E-10				Illumina [up to 5582932] (imputed)	N
733	chr19	19478021	19478022	rs2905426	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19p13.11	MAU2	rs2905426-G	NR	4E-9	(EA)	1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
733	chr19	19478021	19478022	rs2905426	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19p13.11	NR	rs2905426-G	NR	5E-9		1.0638298	[NR]	Illumina [7158791] (imputed)	N
733	chr19	19478021	19478022	rs2905426	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	19p13.11	CILP2, GATAD2A, HAPLN4, MAU2, NCAN, NDUFA13, PBX4, SUGP1, TM6SF2, TSSK6	rs2905426-G	0.372	4E-10		1.0706638	[1.05-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
733	chr19	19478022	19478023	rs2905427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19p13.11		rs2905427-T	0.649518	4E-18		0.020253694	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
733	chr19	19481378	19481379	rs34538000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19p13.11	NR	rs34538000-T	0.651683	8E-10		0.012887	[0.0088-0.017] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
733	chr19	19484294	19484295	rs2905432	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	19p13.11		rs2905432-?	NR	6E-10		0.0209	NR unit decrease	NR [4425810] (imputed)	N
733	chr19	19484294	19484295	rs2905432	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	19p13.11	CILP2, GATAD2A, HAPLN4, MAU2, NCAN, NDUFA13, PBX4, SUGP1, TM6SF2, TSSK6, YJEFN3	rs2905432-?	NR	7E-12		1.071	[1.05-1.09]	Illumina [8000000] (imputed)	N
733	chr19	19494482	19494483	rs150268548	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		19p13.11	PBX4, MAU2	rs150268548-?	NR	9E-8	(EA)	0.028	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
733	chr19	19494482	19494483	rs150268548	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (LDL cholesterol levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	19p13.11	MAU2, GATAD2A	rs150268548-G	0.92	2E-8	(European)	0.05	[0.011-0.089] unit decrease	Affymetrix [6982258] (imputed)	N
733	chr19	19504166	19504167	rs17288409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19p13.11		rs17288409-C	0.259231	2E-13		0.0169528	[0.012-0.021] unit decrease	Illumina [13479295] (imputed)	N
733	chr19	19504166	19504167	rs17288409	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19p13.11	GATAD2A	rs17288409-?	NR	2E-13		0.02405784	[0.018-0.03] unit decrease	Illumina [27896057] (imputed)	N
733	chr19	19505547	19505548	rs8111093	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p13.11	GATAD2A	rs8111093-T	0.1682	9E-9		0.1871	[0.12-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
733	chr19	19508012	19508013	rs10424702	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	19p13.11	GATAD2A	rs10424702-A	NR	1E-6		0.2439	[0.15-0.34] unit decrease	Illumina [9377111] (imputed)	N
733	chr19	19513569	19513570	rs111901094	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	19p13.11	NR	rs111901094-?		2E-9		0.0170799	[0.011-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
733	chr19	19513569	19513570	rs111901094	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	19p13.11	GATAD2A	rs111901094-G	0.82	3E-9		1.04		Affymetrix [11800000] (imputed)	N
733	chr19	19516432	19516433	rs2916068	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2916068-?	NR	5E-8				NR [2625067]	N
733	chr19	19516432	19516433	rs2916068	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs2916068-A	0.662999999999999	4E-8		0.062348027	[0.04-0.085] unit decrease	NR [NR]	N
733	chr19	19525791	19525792	rs2965185	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	19p13.11	NR	rs2965185-T		2E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
733	chr19	19528805	19528806	rs1469713	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	19p13.11	GATAD2A	rs1469713-A	0.64405	1E-10		0.043	[0.03-0.056] unit decrease	Illumina [NR]	N
734	chr19	19539826	19539827	rs35115269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19p13.11	GATAD2A	rs35115269-G	0.386066	1E-12		0.016691003	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
734	chr19	19539826	19539827	rs35115269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19p13.11	GATAD2A	rs35115269-G	0.386055	2E-14		0.017866872	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
734	chr19	19539826	19539827	rs35115269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19p13.11	GATAD2A	rs35115269-G	0.38609	1E-10		0.015001967	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
734	chr19	19539826	19539827	rs35115269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19p13.11	GATAD2A	rs35115269-G	0.38608	2E-11		0.015611859	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
734	chr19	19545098	19545099	rs4808199	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	19p13.11	GATAD2A, NCAN, TM6SF2	rs4808199-A	0.27	2E-8		1.37	[1.23-1.53]	Illumina [93606]	N
734	chr19	19545695	19545696	rs2965183	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	19p13.11		rs2965183-A	NR	1E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
734	chr19	19545695	19545696	rs2965183	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	GATAD2A, MIR640	rs2965183-A	0.35	6E-12	(EA)	1.04	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
734	chr19	19548238	19548239	rs34647936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19p13.11		rs34647936-G	NR	4E-43		0.0215	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
734	chr19	19548238	19548239	rs34647936	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19p13.11	GATAD2A	rs34647936-T	0.8146	4E-24		0.0248	[0.02-0.03] unit increase	Affymetrix [18391927] (imputed)	N
734	chr19	19548238	19548239	rs34647936	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19p13.11	NR	rs34647936-G	0.182	1E-8		0.0080012	[0.0053-0.0107] unit increase	NR [9732723] (imputed)	N
734	chr19	19552412	19552413	rs4808955	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19p13.11	GATAD2A	rs4808955-C	NR	2E-15		0.0331526	[0.025-0.041] unit decrease	Affymetrix [16832071] (imputed)	N
734	chr19	19552412	19552413	rs4808955	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19p13.11	NR	rs4808955-?	NR	3E-6		0.0401	[0.023-0.057] unit decrease	Illumina [at least 560000] (imputed)	N
734	chr19	19572107	19572108	rs4808959	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	19p13.11	SEMA3A	rs4808959-?		5E-9				NR [7428630] (imputed)	N
734	chr19	19577214	19577215	rs4808961	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19p13.11	GATAD2A	rs4808961-C	0.633254	1E-9		0.00889853	[0.006-0.0118] unit increase	Affymetrix [12370749]	N
734	chr19	19577450	19577451	rs117315649	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.11	NR	rs117315649-?	NR	3E-7		0.0086584	[0.0053-0.012] unit decrease	Affymetrix [805426] (imputed)	N
734	chr19	19578742	19578743	rs73002956	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19p13.11		rs73002956-A	0.91597	3E-28		0.0793201	[0.065-0.093] unit increase	NR [11722792] (imputed)	N
734	chr19	19579556	19579557	rs4808962	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	19p13.11	GATAD2A	rs4808962-A	0.8296	1E-9		6.056	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
734	chr19	19580963	19580964	rs113070129	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	19p13.11	TSSK6	rs113070129-?	NR	1E-8	(conditional)	0.0791	NR % increase	Affymetrix [9390170] (imputed)	N
734	chr19	19580963	19580964	rs113070129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19p13.11	NR	rs113070129-G	0.893697	2E-10		0.00948354	[0.0065-0.0124] unit increase	Affymetrix [16582909] (imputed)	N
734	chr19	19580963	19580964	rs113070129	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19p13.11	NR	rs113070129-G	0.893697	8E-15		0.0126233	[0.0093-0.0159] unit increase	Affymetrix [16582965] (imputed)	N
734	chr19	19591065	19591066	rs10401193	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19p13.11	GATAD2A	rs10401193-A	0.819	9E-14		0.028	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
734	chr19	19602820	19602821	rs751858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs751858-G	0.820259	2E-10		0.0342918	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
734	chr19	19603691	19603692	rs4808964	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19p13.11	NR	rs4808964-A	0.3449	5E-9				NR [9056863] (imputed)	N
734	chr19	19603691	19603692	rs4808964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	GATAD2A	rs4808964-A	0.349205	4E-19		0.021413062	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
734	chr19	19610595	19610596	rs3794991	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19p13.11		rs3794991-C	0.915494	2E-8		0.0422139	[0.028-0.057] unit increase	NR [11722792] (imputed)	N
734	chr19	19610595	19610596	rs3794991	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	19p13.11	GATAD2A	rs3794991-T	0.0981095	9E-6		1.321	[1.168 - 1.494]	Illumina [5397657] (imputed)	N
734	chr19	19610595	19610596	rs3794991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.11	GATAD2A	rs3794991-T	NR	7E-9		0.0292868	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
734	chr19	19610595	19610596	rs3794991	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	19p13.11	GATAD2A	rs3794991-T	NR	3E-9		0.42	[0.28-0.56] unit increase	Illumina [9377111] (imputed)	N
734	chr19	19610595	19610596	rs3794991	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19p13.11	GATAD2A, CILP2	rs3794991-T	0.0775	9E-13	(EA)	0.1299	[0.094-0.166] unit increase	Affymetrix, Illumina [NR] (imputed)	N
734	chr19	19610595	19610596	rs3794991	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19p13.11	GATAD2A, CILP2	rs3794991-T	0.0775	4E-9		0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [NR] (imputed)	N
734	chr19	19613621	19613622	rs57009615	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.11	GATAD2A	rs57009615-A	0.824908	2E-11	(linoleoyl-arachidonoyl-glycerol (18:2/20:4) [1]*)	0.198	[0.14-0.26] unit increase	Illumina [13039987] (imputed)	N
734	chr19	19616025	19616026	rs3752151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	GATAD2A	rs3752151-C	0.349064	4E-21		0.023859499	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
734	chr19	19631654	19631655	rs4808965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19p13.11	NR	rs4808965-A	0.63413	1E-41		0.027303	[0.023-0.031] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
734	chr19	19634251	19634251	rs143378367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.11	NDUFA13, CTC-260F20.3, YJEFN3	rs143378367-CT	0.1666	2E-9		0.02950512	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
734	chr19	19640523	19640524	rs4808967	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	19p13.11		rs4808967-?	NR	4E-10		0.0231	NR unit increase	NR [4502103] (imputed)	N
734	chr19	19646271	19646272	rs2304098	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs2304098-C	0.3469	2E-11	(EA)	0.0434	[0.031-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
734	chr19	19651576	19651577	rs12981405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19p13.11		rs12981405-T	0.1664	3E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
734	chr19	19652745	19652746	rs8102502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	19p13.11		rs8102502-C	NR	3E-8		0.0141	[0.009-0.0192] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
734	chr19	19652745	19652746	rs8102502	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19p13.11	Intergenic	rs8102502-T	0.8167	6E-12	(MTAG)	0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
734	chr19	19654116	19654117	rs7252453	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19p13.11	Intergenic	rs7252453-G	0.8182	4E-14		0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
734	chr19	19657499	19657500	rs10402308	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.11	CILP2, FLJ44968, GATAD2A, KIAA0892, NDUFA13, SF4, TM6SF2, TSSK6	rs10402308-A	0.189997	2E-7	(females)	0.01621	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
734	chr19	19657499	19657500	rs10402308	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.11	CILP2, FLJ44968, GATAD2A, KIAA0892, NDUFA13, SF4, TM6SF2, TSSK6	rs10402308-A	0.189997	1E-10		0.01472	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
734	chr19	19657499	19657500	rs10402308	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.11	CILP2, FLJ44968, GATAD2A, KIAA0892, NDUFA13, SF4, TM6SF2, TSSK6	rs10402308-A	0.189997	3E-7	(males)	0.0174	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
734	chr19	19657499	19657500	rs10402308	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19p13.11	CILP2, FLJ44968, GATAD2A, KIAA0892, NDUFA13, SF4, TM6SF2, TSSK6	rs10402308-A	0.189997	2E-11		0.01434	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
734	chr19	19657631	19657632	rs7245983	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19p13.11	CILP2	rs7245983-C	0.3445	2E-15		0.02971055	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
734	chr19	19658471	19658472	rs16996148	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	19p13.11	CILP2, PBX4	rs16996148-T	0.10	4E-9		0.1	[0.06-0.14] unit decrease	Affymetrix [389878]	N
734	chr19	19658471	19658472	rs16996148	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19p13.11	CILP2, PBX4	rs16996148-T	0.1	3E-8		0.1	[0.06-0.14] unit decrease	Affymetrix [389878]	N
734	chr19	19658471	19658472	rs16996148	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	19p13.11	CILP2, NCAN	rs16996148-G	0.92	3E-9		6.1	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
734	chr19	19658471	19658472	rs16996148	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19p13.11	NCAN, CILP2	rs16996148-G	0.89	3E-9		3.32	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p13.11		rs17216525-T	0.07	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	5E-20		0.0407	[0.032-0.049] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	6E-95		0.09	[0.081-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	5E-178		0.1238	[0.12-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	5E-14		0.0329	[0.024-0.042] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	3E-73		0.0788	[0.07-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	2E-15		0.0361	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	2E-152		0.1145	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	2E-11		0.0291	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	1E-30		0.054	[0.045-0.063] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	2E-12		0.0306	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	1E-12		0.0324	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	1E-15		0.035	[0.026-0.044] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	4E-46		0.0622	[0.054-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	1E-39		0.0575	[0.049-0.066] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	1E-105		0.0953	[0.087-0.104] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.11	NR	rs17216525-T	NR	2E-69		0.0768	[0.068-0.085] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19662219	19662220	rs17216525	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs17216525-?	NR	1E-7		0.04458722	[0.028-0.061] unit decrease	Illumina [31978265] (imputed)	N
735	chr19	19662219	19662220	rs17216525	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19p13.11	NCAN, CILP2, PBX4	rs17216525-T	0.07	4E-11		0.11	[0.05-0.17] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
735	chr19	19663849	19663850	rs892023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19p13.11	Intergenic	rs892023-A	0.6077	3E-13	(MTAG)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
735	chr19	19663849	19663850	rs892023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	19p13.11	Intergenic	rs892023-A	0.6077	4E-9		0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
735	chr19	19663849	19663850	rs892023	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19p13.11	Intergenic	rs892023-A	0.6038	7E-11	(MTAG)	0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
735	chr19	19665642	19665643	rs8103992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19p13.11		rs8103992-C	0.800231	4E-11		0.018196149	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19665642	19665643	rs8103992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19p13.11	NR	rs8103992-C	0.800475	5E-13		0.017209	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
735	chr19	19665642	19665643	rs8103992	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19p13.11	CILP2, PBX4	rs8103992-A		1E-9		0.198	unit increase	Affymetrix [at least 2696785] (imputed)	N
735	chr19	19667253	19667254	rs143988316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19p13.11		rs143988316-C	0.918325	5E-8		0.041056	[0.026-0.056] unit decrease	NR [11722792] (imputed)	N
735	chr19	19670687	19670688	rs7249692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19p13.11	PBX4	rs7249692-T	0.329419	3E-11		0.015611359	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19670687	19670688	rs7249692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19p13.11	PBX4	rs7249692-C	0.670612	8E-16		0.018944401	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19670687	19670688	rs7249692	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19p13.11	PBX4	rs7249692-C	0.6719	2E-9		0.02296441	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
735	chr19	19680737	19680738	rs8108659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs8108659-?	NR	7E-38				NR [~ 8900000] (imputed)	N
735	chr19	19682970	19682971	rs56159542	27663945	Middeldorp CM	2016-08-05	J Am Acad Child Adolesc Psychiatry	A Genome-Wide Association Meta-Analysis of Attention-Deficit/Hyperactivity Disorder Symptoms in Population-Based Pediatric Cohorts.	Attention deficit hyperactivity disorder symptom score	17,666 children	NA	19p13.11	PBX4	rs56159542-T	0.21	1E-7				Affymetrix, Illumina [at least 5260671] (imputed)	N
735	chr19	19686071	19686072	rs199768142	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19p13.11	PBX4	rs199768142-?	0.0407	6E-12		0.1458	[0.1-0.19] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
735	chr19	19692578	19692579	rs7252981	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	19p13.11	PBX4	rs7252981-T	NR	3E-6		0.112447	[0.065-0.16] unit decrease	Illumina [7433384] (imputed)	N
735	chr19	19699962	19699963	rs7245672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs7245672-C	0.670339	2E-17				Affymetrix, Illumina [19872809] (imputed)	N
735	chr19	19699962	19699963	rs7245672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19p13.11	NR	rs7245672-C	0.66707	7E-19		0.018666	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
735	chr19	19702383	19702384	rs17217098	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large VLDL	4,734 individuals	NA	19p13.11		rs17217098-A	0.06869176	1E-10		0.268897	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19702383	19702384	rs17217098	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large VLDL	4,734 individuals	NA	19p13.11		rs17217098-A	0.06869176	6E-11		0.273482	[0.19-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19702383	19702384	rs17217098	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large VLDL	4,734 individuals	NA	19p13.11		rs17217098-A	0.06869176	3E-11		0.277782	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19702383	19702384	rs17217098	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large VLDL	4,734 individuals	NA	19p13.11		rs17217098-A	0.06869176	2E-11		0.278478	[0.2-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19702383	19702384	rs17217098	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large VLDL	4,734 individuals	NA	19p13.11		rs17217098-A	0.06869176	7E-11		0.271793	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19702383	19702384	rs17217098	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19p13.11	PBX4	rs17217098-A	0.0677	9E-10		0.04375895	[0.03-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
735	chr19	19704914	19704915	rs8104909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs8104909-T	0.802748	3E-11				Affymetrix, Illumina [23472807] (imputed)	N
735	chr19	19717055	19717056	rs73004967	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large VLDL	4,734 individuals	NA	19p13.11		rs73004967-G	0.068882095	3E-10		0.262375	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19717055	19717056	rs73004967	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large VLDL particle concentration	4,734 individuals	NA	19p13.11		rs73004967-G	0.068882095	1E-10		0.267178	[0.19-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
735	chr19	19717055	19717056	rs73004967	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	19p13.11	PBX4	rs73004967-A	NR	1E-8		0.5455	[0.36-0.73] unit decrease	Illumina [9377111] (imputed)	N
735	chr19	19717055	19717056	rs73004967	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19p13.11	SUGP1	rs73004967-?	NR	1E-22		3.974	[3.14-4.81] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
735	chr19	19719823	19719824	rs10417097	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels in response to fenofibrate treatment (parental genotype effect)	173 European ancestry families	NA	19p13.11	PBX4	rs10417097-?		9E-7	(paternal effect)			Affymetrix [715787]	N
735	chr19	19719823	19719824	rs10417097	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels in response to fenofibrate treatment (parental genotype effect)	173 European ancestry families	NA	19p13.11	PBX4	rs10417097-?		7E-6	(difference between paternal and maternal transmissions)			Affymetrix [715787]	N
735	chr19	19719823	19719824	rs10417097	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels in response to fenofibrate treatment (parental genotype effect)	173 European ancestry families	NA	19p13.11	PBX4	rs10417097-?		3E-6	(paternal & maternal alleles modelled separately)			Affymetrix [715787]	N
735	chr19	19719823	19719824	rs10417097	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	19p13.11	PBX4	rs10417097-?		8E-6	(paternal effect)			Affymetrix [715787]	N
735	chr19	19720398	19720399	rs57504626	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		19p13.11	PBX4	rs57504626-?	NR	6E-7	(EA)	0.014	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
735	chr19	19720787	19720788	rs16996185	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	19p13.11		rs16996185-G	0.08	7E-11		7.76	[5.43-10.09] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
735	chr19	19721721	19721722	rs12610185	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19p13.11	PBX4	rs12610185-A	0.053	4E-6	(TG )	0.03	[NR] mg/dL increase	Illumina [899892]	N
735	chr19	19723214	19723215	rs10500212	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19p13.11		rs10500212-C	0.916915	6E-15		0.0570041	[0.043-0.071] unit increase	NR [11722792] (imputed)	N
735	chr19	19723214	19723215	rs10500212	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.11	PBX4	rs10500212-?	NR	4E-9	(DHA)	0.06501618	NR unit decrease	Illumina [609262]	N
735	chr19	19723214	19723215	rs10500212	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19p13.11	PBX4	rs10500212-?	NR	9E-10	(DHA)	0.07718108	NR unit decrease	Illumina [609262]	N
735	chr19	19727041	19727042	rs6511046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19p13.11	PBX4	rs6511046-T	0.398653	1E-13		0.01679712	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19740728	19740729	rs880090	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	19p13.11	GMIP, LPAR2	rs880090-?		1E-9				NR [6786993] (imputed)	N
735	chr19	19742750	19742751	rs11879838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19p13.11	GMIP	rs11879838-C	0.747082	3E-17		0.021589898	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19742750	19742751	rs11879838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs11879838-C	0.755726	2E-18				Affymetrix, Illumina [19905671] (imputed)	N
735	chr19	19743097	19743098	rs12609436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	GMIP	rs12609436-T	0.482081	1E-13		0.016843846	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19743097	19743098	rs12609436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	GMIP	rs12609436-T	0.482101	3E-10		0.014283113	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19743729	19743730	rs8113682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19p13.11	GMIP	rs8113682-G	0.748366	1E-18		0.022643344	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19743729	19743730	rs8113682	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19p13.11	NR	rs8113682-G	0.747423	6E-20		0.021612	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
735	chr19	19746150	19746151	rs2304128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19p13.11		rs2304128-G	0.920071	8E-10		0.045341	[0.031-0.06] unit increase	NR [11722792] (imputed)	N
735	chr19	19746150	19746151	rs2304128	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19p13.11	NR	rs2304128-T	0.123403	9E-9		0.0226	[0.015-0.03] unit increase	Affymetrix [23037915] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.11	GMIP	rs2304128-T	NR	8E-44	(EA)			Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.11	GMIP	rs2304128-T	NR	2E-39				Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.11	GMIP	rs2304128-T	NR	7E-47	(EA)			Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.11	GMIP	rs2304128-T	NR	5E-40				Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	4E-22		0.03	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	1E-23	(EA)	0.047	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	4E-14		0.028	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	1E-20	(EA)	0.06	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.11	GMIP	rs2304128-T	NR	5E-226				Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19p13.11	GMIP	rs2304128-T	NR	2E-193	(EA)			Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.11	GMIP	rs2304128-T	NR	6E-39	(EA)			Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19p13.11	GMIP	rs2304128-T	NR	4E-31				Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	8E-20		2.804	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	2E-21	(EA)	3.507	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	6E-12	(EA)	2.956	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19746150	19746151	rs2304128	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19p13.11	GMIP	rs2304128-T	NR	1E-10		1.928	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
735	chr19	19750821	19750822	rs45458192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19p13.11		rs45458192-T	NR	7E-11		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
735	chr19	19750821	19750822	rs45458192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19p13.11		rs45458192-?	NR	7E-15				NR [~ 8900000] (imputed)	N
735	chr19	19756073	19756076	rs3841260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19p13.11		rs3841260-A	NR	3E-9		0.0235	[0.016-0.031] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
735	chr19	19756073	19756076	rs3841260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19p13.11		rs3841260-A	NR	2E-16		0.0348	[0.027-0.043] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
735	chr19	19756073	19756076	rs3841260	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19p13.11	ATP13A1	rs3841260-?		8E-11		0.0894	[0.063-0.116] unit increase	Illumina [31500000] (imputed)	N
735	chr19	19756073	19756076	rs3841260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.072987	7E-15		0.03978784	[0.03-0.05] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19756073	19756076	rs3841260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.073105	2E-11		0.029723976	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19756073	19756076	rs3841260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.073097	9E-20		0.039535034	[0.031-0.048] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19756073	19756076	rs3841260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.073091	7E-16		0.035798814	[0.027-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr19	19756073	19756076	rs3841260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.0737	4E-31		0.08285124	[0.069-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr19	19756073	19756076	rs3841260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19p13.11	ATP13A1	rs3841260-A	0.0736	6E-21		0.06684476	[0.053-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr19	19756073	19756076	rs3841260	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (LDL cholesterol levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	19p13.11	ATP13A1, PBX4	rs3841260-AGCC	0.92	2E-8	(European)	0.067	[0.028-0.106] unit decrease	Affymetrix [6982258] (imputed)	N
735	chr19	19765498	19765499	rs45522544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19p13.11		rs45522544-T	NR	6E-47		0.1413	[0.12-0.16] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19p13.11	ATP13A1	rs45522544-T	0.013804	5E-13		0.06823047	[0.05-0.087] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19p13.11	ATP13A1	rs45522544-T	0.013779	2E-36		0.13342641	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19p13.11	ATP13A1	rs45522544-T	0.01378	4E-52		0.14847288	[0.13-0.17] unit increase	Affymetrix [93095623] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19p13.11	NR	rs45522544-C	0.987007	4E-12		0.057171	[0.041-0.073] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs45522544-C	0.98753	8E-74				Affymetrix, Illumina [24588908] (imputed)	N
735	chr19	19765498	19765499	rs45522544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19p13.11	NR	rs45522544-C	0.98705	2E-77		0.152898	[0.14-0.17] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
735	chr19	19767264	19767265	rs144193693	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19p13.11	NR	rs144193693-?	NR	9E-7		0.0083633	[0.005-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
735	chr19	19776813	19776814	rs10421328	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	19p13.11	NR	rs10421328-?	NR	7E-6		0.041309	[0.023-0.059] unit increase	Affymetrix [9658292] (imputed)	N
735	chr19	19786098	19786099	rs58434384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19p13.11	ZNF101	rs58434384-G	NR	9E-9		0.0290246	[0.019-0.039] unit decrease	Affymetrix [321016] (imputed)	N
735	chr19	19786098	19786099	rs58434384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19p13.11		rs58434384-?	NR	3E-8				NR [~ 8900000] (imputed)	N
735	chr19	19789424	19789425	rs71172513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19p13.11	ZNF101	rs71172513-C	0.2849	3E-11		0.02718489	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	2E-14		0.0328	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	1E-56		0.0663	[0.058-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	5E-112		0.094	[0.086-0.102] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	4E-59		0.0678	[0.06-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	2E-9		0.0263	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	6E-97		0.0874	[0.079-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	5E-18		0.0391	[0.03-0.048] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	5E-12		0.0302	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	2E-22		0.0408	[0.033-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	6E-20		0.0383	[0.03-0.047] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	4E-69		0.0737	[0.065-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	NR	4E-33		0.0501	[0.042-0.058] unit increase	Affymetrix [9000000] (imputed)	N
735	chr19	19789527	19789528	rs2304130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-G	0.0918924	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
735	chr19	19789527	19789528	rs2304130	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19p13.11	NR	rs2304130-?	NR	8E-8		0.03063635	[0.019-0.042] unit decrease	Illumina [31978265] (imputed)	N
735	chr19	19789527	19789528	rs2304130	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19p13.11	NR	rs2304130-?	NR	8E-8		2.673441	[1.7-3.65] unit decrease	Illumina [32003504] (imputed)	N
735	chr19	19789527	19789528	rs2304130	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19p13.11	NR	rs2304130-?	NR	2E-6		2.124432	[1.24-3] unit decrease	Illumina [31808917] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	NR	6E-18		0.059	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	0.921	7E-14	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	0.897	3E-8	(Hispanic)	0.125	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	NR	1E-10		0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	0.921	1E-9	(EA)	0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	NR	3E-6		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19p13.11	NR	rs2304130-A	0.921	8E-6	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
735	chr19	19789527	19789528	rs2304130	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19p13.11	ZNF101	rs2304130-A	0.9146	2E-8	(EA)	0.292	mmHg decrease	Illumina [242296]	N
735	chr19	19789527	19789528	rs2304130	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.11	ZNF101	rs2304130-A	0.914	5E-6	(EA)	0.027	[0.015-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
735	chr19	19789527	19789528	rs2304130	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19p13.11	ZNF101	rs2304130-A	0.906	5E-7		0.028	[0.017-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
735	chr19	19789527	19789528	rs2304130	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	19p13.11	LPAR2	rs2304130-?	NR	6E-9	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
735	chr19	19789527	19789528	rs2304130	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19p13.11	CILP2, ZNF101	rs2304130-G	0.09	4E-8		0.07	[0.04-0.10] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
735	chr19	19789527	19789528	rs2304130	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	19p13.11	NCAN	rs2304130-G	0.07	3E-6		0.1	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
735	chr19	19789527	19789528	rs2304130	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19p13.11	NCAN	rs2304130-G	0.07	3E-6		0.12	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
735	chr19	19789527	19789528	rs2304130	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19p13.11	NCAN	rs2304130-G	0.07	2E-15		0.15	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
736	chr19	19793544	19793545	rs56408111	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19p13.11	ZNF101, ZNF14	rs56408111-T	0.873281	8E-11	(linoleoyl-arachidonoyl-glycerol (18:2/20:4) [2]*)	0.217	[0.15-0.28] unit increase	Illumina [13039987] (imputed)	N
736	chr19	19793544	19793545	rs56408111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p13.11	NR	rs56408111-C	0.0900327	2E-16				Affymetrix, Illumina [23114412] (imputed)	N
736	chr19	19793544	19793545	rs56408111	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	19p13.11	ZNF101	rs56408111-C	0.0839103	5E-6		1.54577	[1.28158-1.86442]	NR [7263501] (imputed)	N
736	chr19	19793544	19793545	rs56408111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19p13.11		rs56408111-?	NR	1E-7				NR [~ 8900000] (imputed)	N
736	chr19	19795457	19795462	rs72396995	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19p13.11	NR	rs72396995-T	0.2556	1E-7	(EA)	0.0383	[0.024-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
736	chr19	19800288	19800289	rs143333049	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p13.11		rs143333049-A	0.96	2E-21				Affymetrix [10369434] (imputed)	N
736	chr19	19800288	19800289	rs143333049	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19p13.11	NR	rs143333049-G	0.04016	5E-16		0.004958	[0.0038-0.0061] unit increase	Affymetrix [NR] (imputed)	N
736	chr19	19800288	19800289	rs143333049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p13.11		rs143333049-?	NR	8E-10				NR [~ 8900000] (imputed)	N
736	chr19	19800466	19800467	rs4808981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p13.11		rs4808981-?	NR	5E-12				NR [~ 8900000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	1E-17		0.0416	[0.032-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	1E-21		0.0464	[0.037-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	2E-22		0.0474	[0.038-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	1E-21		0.0464	[0.037-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	2E-9		0.0315	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
736	chr19	19805253	19805254	rs76530229	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs76530229-A	NR	1E-17		0.0418	[0.032-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19829100	19829101	rs2163813	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	19p13.11	ZNF14, ZNF101, ATP13A1	rs2163813-T	0.74	5E-6		0.018	[0.01-0.026] unit decrease	Affymetrix, Illumina [2378986] (imputed)	N
736	chr19	19854295	19854296	rs16996277	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19p13.11	NR	rs16996277-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
736	chr19	19854295	19854296	rs16996277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19p13.11		rs16996277-?	NR	4E-9				NR [~ 8900000] (imputed)	N
736	chr19	19855548	19855549	rs117414940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19p13.11	NR	rs117414940-C	NR	1E-10		0.0524	[0.037-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19855548	19855549	rs117414940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19p13.11	NR	rs117414940-C	NR	5E-18		0.0705	[0.055-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19855548	19855549	rs117414940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19p13.11	NR	rs117414940-C	NR	9E-17		0.0677	[0.052-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19855548	19855549	rs117414940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19p13.11	NR	rs117414940-C	NR	3E-13		0.0594	[0.043-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
736	chr19	19882475	19882476	rs4808983	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19p13.11	LINC00663	rs4808983-?	NR	6E-10	(L_VLDL_C)	0.048508156	NR unit decrease	Illumina [609262]	N
737	chr19	19925098	19925099	rs28680895	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	19p13.11	ZNF506	rs28680895-T	0.9532	4E-6	(AA)			Illumina [NR] (imputed)	N
737	chr19	20036175	20036176	rs10411195	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA		ZNF505	rs10411195-?	0.03	6E-6	(CPD)	0.21	[NR] cigarettes per day decrease	Illumina [~ 518000]	N
738	chr19	20059492	20059493	rs10405744	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of olanzapine in severe mental disorder (concentration dose ratio)	Up to 290 European ancestry cases	NA	19p12	intergenic	rs10405744-A	NR	2E-7		0.5736	[NR] unit decrease	Affymetrix [686595]	N
738	chr19	20108061	20108062	rs8104863	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Sutterella)	1,068 Japanese ancestry individuals	NA	19p12	ZNF682	rs8104863-C	0.19	2E-6		0.031	[0.018-0.044] unit decrease	Illumina [6380737] (imputed)	N
738	chr19	20125422	20125423	rs1225001170	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	19p12		rs1225001170-?	NR	9E-6				Illumina [7401356] (imputed)	N
738	chr19	20128371	20128372	rs10405773	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	19p12		rs10405773-A	0.793654	3E-6		0.0151959	[0.0089-0.0215] unit decrease	Illumina [13900000] (imputed)	N
738	chr19	20175457	20175458	rs184992198	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		19p12	Intergenic	rs184992198-T	0.816	2E-6	(liability model)	0.11	[0.071-0.149] unit increase	NR [19725427] (imputed)	N
739	chr19	20190408	20190409	rs188224937	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	19p12	NR	rs188224937-C	NR	9E-6	(AA)	0.388101	[0.22-0.56] unit decrease	Affymetrix [up to 6007810] (imputed)	N
739	chr19	20213780	20213781	rs75916629	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19p12	ZNF90	rs75916629-A	0.974814	5E-20		0.00681792	[0.0053-0.0083] unit increase	Affymetrix [13995440] (imputed)	N
739	chr19	20229168	20229169	rs61998208	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	19p12	ZNF90	rs61998208-T	0.055	9E-16		0.45	[0.34-0.55] unit decrease	Affymetrix [339439]	N
739	chr19	20240647	20240648	rs184130600	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19p12		rs184130600-T	0.985	1E-12				Affymetrix [10369434] (imputed)	N
739	chr19	20251075	20251076	rs142492786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19p12		rs142492786-?	NR	5E-8				NR [~ 8900000] (imputed)	N
739	chr19	20302393	20302394	rs836901	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	19p12	CTC-260E6.6, ZNF486, ZNF90, ZNF826P	rs836901-T	NR	7E-6	(sleep duration, weekdays)	0.2775	[0.16-0.4] unit decrease	Affymetrix [7141204] (imputed)	N
740	chr19	20329110	20329111	rs1654260	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	19p12	LOC100421704	rs1654260-A	0.488	8E-6	(Allelic model)	1.749	[1.365-2.24]	Illumina [733202]	N
741	chr19	20479900	20479901	rs144984216	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19p12	ZNF486	rs144984216-C	0.975019	3E-9		0.0382464	[0.026-0.051] unit increase	Affymetrix [NR] (imputed)	N
741	chr19	20479900	20479901	rs144984216	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19p12	ZNF486	rs144984216-C	0.975022	3E-8		0.0370805	[0.024-0.05] unit increase	Affymetrix [NR] (imputed)	N
741	chr19	20484675	20484676	rs73002745	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19p12	intergenic	rs73002745-C	0.114265496031173	4E-6	(G_unclassified_P_Firmicutes_HB)	0.557725	[0.32-0.8] unit decrease	Illumina [7711310] (imputed)	N
742	chr19	20635290	20635291	rs117403524	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19p12	NR	rs117403524-?	NR	5E-6	(Native Hawaiian)	1.3757	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
742	chr19	20707772	20707773	rs66919182	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA2658 sp002841545 abundance in stool	5,959 Finnish ancestry individuals	NA	19p12		rs66919182-G	0.147332	2E-8		0.0433962	[0.028-0.059] unit decrease	Illumina [7980478] (imputed)	N
744	chr19	20842277	20842278	rs274803	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	19p12		rs274803-T	0.3947	6E-6		1.459	[1.238-1.718]	Affymetrix [7975321] (imputed)	N
744	chr19	20846270	20846271	rs4808260	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	19p12	ZNF626	rs4808260-C	0.3	7E-6	(AA-glucose response)	3.71	[2.08-5.34] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
744	chr19	20874737	20874738	rs6511152	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	19p12	CTD-2542C24.2, ZNF626, VN1R79P, ZNF66P	rs6511152-G	NR	1E-6	(number of awakenings after sleep onset, weekdays)	0.1105	[0.066-0.155] unit decrease	Affymetrix [7141204] (imputed)	N
745	chr19	20997795	20997796	rs587212	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p12	NR	rs587212-?	NR	9E-6				Affymetrix [NR]	N
749	chr19	21508120	21508121	rs185596787	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	19p12		rs185596787-T	0.97376	4E-6		0.0396507	[0.023-0.056] unit decrease	Illumina [13900000] (imputed)	N
749	chr19	21529575	21529576	rs145389767	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19p12	ZNF738	rs145389767-G	0.979	2E-13		1.22	[1.16-1.29]	Affymetrix, Illumina [11800000] (imputed)	N
749	chr19	21601731	21601732	rs192500784	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19p12	ZNF493, CTD-2561J22.3	rs192500784-A	0.9963	3E-6		0.3495	[0.2-0.5] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
750	chr19	21666209	21666210	rs2562456	19207018	Kim H	2009-02-01	Pharmacogenomics	Genome-wide association study of acute post-surgical pain in humans.	Pain	112 European ancestry individuals	NA		LOC400680, ZNF429	rs2562456-?	NR	2E-10	(onset time of analgesia)			Affymetrix [374975]	N
750	chr19	21681503	21681504	rs117891518	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p12	NR	rs117891518-G	0.0122	1E-8	(S100A9)	0.1536	NR unit increase	Illumina [1671387] (imputed)	N
750	chr19	21693127	21693128	rs7259317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19p12		rs7259317-T	NR	1E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
750	chr19	21693127	21693128	rs7259317	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19p12		rs7259317-?	NR	3E-8				NR [~ 8900000] (imputed)	N
750	chr19	21704844	21704845	rs8110814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19p12	NR	rs8110814-A	0.537543	2E-11		0.012446	[0.0088-0.0161] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
750	chr19	21751810	21751811	rs11085466	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	19p12	ZNF429	rs11085466-G	0.782	2E-7	(same direction)	1.15	[1.09-1.22]	Illumina [up to 6000000] (imputed)	N
750	chr19	21754766	21754767	rs6511268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19p12	NR	rs6511268-C	0.338387	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
751	chr19	21779342	21779343	rs7251111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19p12	NR	rs7251111-C	0.324383	2E-10		0.01236	[0.0086-0.0162] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
751	chr19	21800424	21800425	rs142586351	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Eosinophil counts	1,555 Sub-Saharan African ancestry individuals	NA	19p12	intergenic	rs142586351-?	NR	3E-8				Illumina [20594536] (imputed)	N
751	chr19	21812762	21812763	rs146923867	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	19p12	LOC400682	rs146923867-C	NR	3E-10		0.576	[0.4-0.75] unit increase	NR [11024754] (imputed)	N
751	chr19	21833013	21833014	rs66562280	32671597	Streicher SA	2020-07-15	Hum Genet	A pooled genome-wide association study identifies pancreatic cancer susceptibility loci on chromosome 19p12 and 19p13.3 in the full-Jewish population.	Pancreatic cancer	604 Jewish cases, 2,332 Jewish controls	NA	19p12	ZNF100	rs66562280-T	0.32	3E-8		1.55	[1.33-1.81]	Affymetrix, Illumina [1286673] (imputed)	N
751	chr19	21856745	21856746	rs150182828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19p12		rs150182828-C	0.028091719	5E-18		0.26353547	[0.2-0.32] unit decrease	Illumina [13429769] (imputed)	N
751	chr19	21856745	21856746	rs150182828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19p12		rs150182828-C	NR	5E-18		0.2635	[0.2-0.32] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
751	chr19	21856745	21856746	rs150182828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19p12		rs150182828-C	0.026642722	5E-14		0.24699946	[0.18-0.31] unit decrease	Illumina [13134967] (imputed)	N
751	chr19	21856745	21856746	rs150182828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19p12		rs150182828-C	NR	5E-14		0.247	[0.18-0.31] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
751	chr19	21856745	21856746	rs150182828	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	19p12		rs150182828-C	0.033328465	2E-13		0.82112134	[0.778956662-0.865568316]	Illumina [8919992] (imputed)	N
751	chr19	21860954	21860955	rs73018258	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	19p12		rs73018258-A	0.02693	5E-7		1.7262213	NR	Affymetrix [7846216] (imputed)	N
751	chr19	21879576	21879577	rs11671323	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	19p12	chr19mb21	rs11671323-G	0.417849335	3E-7		0.149	[0.092-0.206] unit decrease	Affymetrix [~ 9800000] (imputed)	N
752	chr19	21890338	21890339	rs6511285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19p12		rs6511285-?	NR	2E-10				NR [~ 8900000] (imputed)	N
752	chr19	21912754	21912755	rs35717293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19p12		rs35717293-A	0.438	9E-9		0.12645905	[0.082-0.17] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
752	chr19	21912754	21912755	rs35717293	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19p12		rs35717293-A	0.4382	1E-9		0.08513956	[0.058-0.112] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
752	chr19	21932573	21932574	rs12972593	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	19p12	ZNF100	rs12972593-G	NR	4E-6		0.0917869	[0.053-0.131] unit decrease	Illumina [at least 950000] (imputed)	N
752	chr19	21950401	21950402	rs6511291	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	19p12	ZNF100	rs6511291-T	0.436	7E-11		0.1158	[0.081-0.15] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
752	chr19	21956135	21956136	rs8101143	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	19p12	intergenic	rs8101143-?	NR	2E-7				NR [~ 2000000]	N
753	chr19	22041118	22041119	rs35890933	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	19p12	NR	rs35890933-G	NR	7E-6		0.1647	[0.093-0.237] SD units decrease	NR [10700000] (imputed)	N
753	chr19	22100705	22100706	rs142395395	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19p12	ZNF257	rs142395395-A	0.969	7E-23		1.24	[1.19-1.29]	Affymetrix, Illumina [11800000] (imputed)	N
753	chr19	22135269	22135270	rs2262909	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	19p12	NR	rs2262909-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
754	chr19	22156857	22156858	rs200113618	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls, 301 Oceanian ancestry cases, 348 Oceanian ancestry controls	NA	19p12	NR	rs200113618-C	0.04	2E-7				Illumina [6479975] (imputed)	N
754	chr19	22205166	22205167	rs8104559	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19p12	ZNF208	rs8104559-T	0.8418	5E-10		0.2282	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
754	chr19	22215440	22215441	rs8105767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	19p12		rs8105767-G	NR	5E-8		0.0496	[0.032-0.067] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
754	chr19	22215440	22215441	rs8105767	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	19p12	ZNF208	rs8105767-G	0.3	5E-13		0.039	[0.029-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
754	chr19	22215456	22215457	rs8105895	25378290	McQueen MB	2014-11-07	Behav Genet	The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.	Body mass index (change over time)	917 European ancestry individuals, 677 African American individuals, 209 Hispanic individuals, 73 Asian ancestry individuals, 8 Native American ancestry individuals, 2 individuals	NA	19p12	ZNF208, ZNF257	rs8105895-T	0.14	3E-6		1.26	[0.73-1.79] unit increase	Illumina [717411]	N
754	chr19	22248316	22248317	rs10415826	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	19p12	NR	rs10415826-T	0.2	9E-7		1.22	[1.13-1.32]	Illumina [9673063] (imputed)	N
754	chr19	22257557	22257558	rs148316037	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	19p12	NR	rs148316037-C	0.0257	6E-12		0.2365	[0.17-0.3] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
754	chr19	22257557	22257558	rs148316037	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	19p12	ZNF257	rs148316037-T	0.97	5E-11		1.26	1.17-1.34	Illumina [12557761] (imputed)	N
754	chr19	22267848	22267849	rs73019876	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	19p12	ZNF257	rs73019876-T	0.57	2E-8		1.1764705	[1.11-1.25]	Illumina [9210350] (imputed)	N
755	chr19	22293705	22293706	rs7253490	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	19p12	ZNF257	rs7253490-C	NR	1E-12		0.043	NR unit decrease	Illumina [6407959] (imputed)	N
755	chr19	22316712	22316713	rs28420503	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	19p12	ZNF257	rs28420503-?	NR	4E-6		4.79	[2.17-10.56]	Illumina [654642] (imputed)	N
755	chr19	22359439	22359440	rs412658	23001564	Mangino M	2012-09-25	Hum Mol Genet	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	19p12	ZNF676	rs412658-T	0.3564	1E-8		0.0497	[0.032-0.067] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
755	chr19	22366773	22366774	rs77923659	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	19p12		rs77923659-G	NR	7E-6		27.878	[15.99-39.76] unit increase	Illumina [NR] (imputed)	N
755	chr19	22390070	22390071	rs34312380	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	19p12	ZNF676	rs34312380-?	NR	3E-6		4.7619047	[2.17-11.11]	Illumina [654642] (imputed)	N
756	chr19	22446747	22446748	rs60029395	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	19p12		rs60029395-A	0.13	8E-8	(African)	0.097	[0.062-0.132] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
756	chr19	22446747	22446748	rs60029395	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (1df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	19p12		rs60029395-A	0.13	3E-8	(African)	0.1013	[0.065-0.137] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
756	chr19	22446747	22446748	rs60029395	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (1df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	19p12		rs60029395-?	NR	5E-6	(African)	0.0939	[0.053-0.134] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
756	chr19	22507704	22507705	rs7259376	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	19p12	ZNF729	rs7259376-A	0.46	4E-8		0.11	[0.071-0.149] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
756	chr19	22515250	22515251	rs1975174	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	19p12	ZNF676	rs1975174-T	NR	2E-6		0.05	[0.03-0.07] kb increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
757	chr19	22554853	22554854	rs1865075	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	19p12	LOC342994	rs1865075-?	NR	6E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
757	chr19	22573487	22573487	rs60523831	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	19p12	ZNF98	rs60523831-T	0.375	2E-6		0.08	unit increase	Illumina [5510858] (imputed)	N
757	chr19	22598478	22598479	rs10405764	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	19p12	ZNF98	rs10405764-?		4E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
757	chr19	22598478	22598479	rs10405764	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	19p12	ZNF98	rs10405764-T	0.0166	2E-7	(African)	19.1	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
757	chr19	22608373	22608374	rs10404998	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	19p12	ZNF98	rs10404998-?	NR	3E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
757	chr19	22614121	22614122	rs931608	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	19p12	ZNF98	rs931608-?	NR	1E-6	(DMFS5mand)			Illumina [518997]	N
757	chr19	22614121	22614122	rs931608	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	19p12	LOC342994, ZNF98	rs931608-?	NR	3E-7	(absolute LDL-C reduction)	4.2	[2.44-5.96] mg/dL increase	Illumina [814418]	N
758	chr19	22689386	22689387	rs892051	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	19p12	LOC105376917	rs892051-T	0.149	1E-6	(women)			Illumina [622468]	N
758	chr19	22741674	22741675	rs8111998	21979947	Li X	2011-10-06	Hum Mol Genet	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	19p12	intergenic	rs8111998-?	NR	8E-7		1.71		Illumina [~ 290000]	N
758	chr19	22794685	22794686	rs11671104	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	19p12	VN1R86P, ZNF492	rs11671104-?	0.89-0.94	4E-6	(Fruit)	1.25	[1.13-1.37]	Affymetrix, Illumina [> 2700000] (imputed)	N
758	chr19	22799255	22799256	rs187021028	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	19p12		rs187021028-A	0.01356	9E-9		2.570694	NR	Affymetrix [7846216] (imputed)	N
760	chr19	23005981	23005982	rs8111296	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p12	NR	rs8111296-?	NR	7E-137				Affymetrix [NR]	N
760	chr19	23056345	23056346	rs7246967	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	19p12	LOC646864, ZNF728	rs7246967-C	0.16	4E-6	(Dominant model)	1.4	[NR]	Illumina [1795103]	N
761	chr19	23104067	23104068	rs60907808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19p12		rs60907808-?	NR	1E-12				NR [~ 8900000] (imputed)	N
762	chr19	23205183	23205184	rs58521262	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	19p12	ZNF728	rs58521262-G	0.827	5E-14		1.3513513	[1.25-1.47]	Illumina [9210350] (imputed)	N
763	chr19	23395316	23395317	rs12980365	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	19p12	ZNF724	rs12980365-A	0.959	1E-7		1.77	[1.43-2.18]	Illumina [569200]	N
764	chr19	23522997	23522998	rs29987	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19p12	ZNF675	rs29987-?	NR	5E-6	(LPC 20:3)	0.32226568	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
764	chr19	23542289	23542290	rs428549	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	19p12		rs428549-G	NR	1E-27		1.09647		Affymetrix, Illumina [62056310] (imputed)	N
765	chr19	23709911	23709912	rs117920382	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	19p12	NR	rs117920382-?	NR	4E-7				Affymetrix [28509962] (imputed)	N
766	chr19	23739479	23739480	rs2195962	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to non-steroidal anti-inflammatory drugs (pain relief efficacy)	25 Japanese ancestry individuals	NA	19p12	NR	rs2195962-?	NR	4E-6				Illumina [445723]	N
766	chr19	23761512	23761513	rs10415081	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	19p12	NR	rs10415081-G	NR	3E-6		1.54	NR	Illumina [6470615] (imputed)	N
766	chr19	23776032	23776033	rs12461406	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Response to non-steroidal anti-inflammatory drugs (pain relief efficacy)	25 Japanese ancestry individuals	NA	19p12	NR	rs12461406-?	NR	4E-6				Illumina [445723]	N
766	chr19	23834094	23834095	rs61193264	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19p12		rs61193264-C	0.29	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
766	chr19	23834094	23834095	rs61193264	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19p12		rs61193264-C	0.29	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
766	chr19	23834094	23834095	rs61193264	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19p12	NR	rs61193264-C	0.2963	2E-9				NR [9056863] (imputed)	N
766	chr19	23834094	23834095	rs61193264	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	19p12		rs61193264-T	NR	4E-7		1.37791	NR	Affymetrix [7846216] (imputed)	N
767	chr19	23907629	23907630	rs4449070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,367 Icelandic ancestry individuals	NA	19p12		rs4449070-T	0.2217	8E-66		0.380514	[0.34-0.42] unit decrease	Illumina [7506463] (imputed)	N
767	chr19	23907629	23907630	rs4449070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,365 Icelandic ancestry individuals	NA	19p12		rs4449070-T	0.2217	2E-73		0.392909	[0.35-0.44] unit decrease	Illumina [7506463] (imputed)	N
768	chr19	24031214	24031215	rs6511621	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p12	NR	rs6511621-?	NR	3E-6				Affymetrix [NR]	N
768	chr19	24050827	24050828	rs34601376	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	19p12	ZNF726	rs34601376-T	0.195	2E-11		1.29	1.20-1.39	Illumina [9210350] (imputed)	N
769	chr19	24145150	24145151	rs12461921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,367 Icelandic ancestry individuals	NA	19p12		rs12461921-T	0.1467	8E-25		0.275452	[0.22-0.33] unit increase	Illumina [7506463] (imputed)	N
769	chr19	24145150	24145151	rs12461921	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNDP1	5,365 Icelandic ancestry individuals	NA	19p12		rs12461921-T	0.1467	3E-27		0.283902	[0.23-0.34] unit increase	Illumina [7506463] (imputed)	N
769	chr19	24149544	24149545	rs2195987	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	19p12	AK125686	rs2195987-C	0.22	1E-9		1.23	1.15-1.32	Illumina [9210350] (imputed)	N
769	chr19	24149544	24149545	rs2195987	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	19p12	AK125686	rs2195987-C	0.83	1E-8		1.22	[1.15-1.28]	Illumina [at least 371504] (imputed)	N
769	chr19	24149544	24149545	rs2195987	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	19p12	intergenic	rs2195987-T	0.782	3E-8		1.32	[1.19-1.45]	Illumina [610240]	N
769	chr19	24167221	24167222	rs4932739	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0)	11,494 European ancestry individuals	NA	19p12	NR	rs4932739-?	NR	3E-6		0.0347	[0.02-0.049] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
769	chr19	24177789	24177790	rs11668296	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	19p12	ZNF254	rs11668296-?	NR	2E-8				NR [3144808] (imputed)	N
769	chr19	24222785	24222786	rs7260598	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	19p12	ZNF254	rs7260598-?	NR	6E-6				Affymetrix, Illumina [~ 1300000]	N
769	chr19	24240009	24240010	rs888316	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p12	NR	rs888316-?	NR	2E-39				Affymetrix [NR]	N
769	chr19	24241623	24241624	rs17206080	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19p12	NR	rs17206080-?	NR	1E-7				Affymetrix [NR]	N
770	chr19	24355492	24355493	rs11668609	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	19p12	ZNF254	rs11668609-?	NR	3E-6				Affymetrix, Illumina [~ 1300000]	N
771	chr19	24462408	24462409	rs7339483	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	19p11	ZNF254	rs7339483-?		6E-6		0.3683	[NR] unit increase	Affymetrix [679050]	N
772	chr19	24545365	24545366	rs8187137	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19p11	NR	rs8187137-?	NR	3E-9		5.949	NR z score decrease	Illumina [at least 830937] (imputed)	N
772	chr19	24562109	24562110	rs1817224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p11	NR	rs1817224-C	0.01045	4E-10	(STAT1)	0.09858	NR unit increase	Illumina [1671387] (imputed)	N
772	chr19	24562109	24562110	rs1817224	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19p11	NR	rs1817224-C	0.01045	3E-8	(USP5)	0.1414	NR unit increase	Illumina [1671387] (imputed)	N
772	chr19	24619007	24619008	rs143428611	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	19p11	NR	rs143428611-C	NR	4E-6	(African)	0.4969	[0.29-0.71] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
798	chr19	28021967	28021968	rs1592840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q11	POP4	rs1592840-?	NR	7E-6	(DAG 34:1)	0.33844733	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
799	chr19	28127200	28127201	rs11882251	34271060	DeVore SB	2021-07-13	J Allergy Clin Immunol	Novel Role for Caspase Recruitment Domain Family Member 14 and its Genetic Variant rs11652075 in Skin Filaggrin Homeostasis.	Non(never)-lesional skin FLG expression levels in childhood atopic dermatitis	240 Black or unknown ancestry individuals	NA	19q11		rs11882251-T	NR	3E-6	19	0.88	unit decrease	Illumina [487523]	N
799	chr19	28129088	28129089	rs575005923	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	19q11		rs575005923-?	NR	4E-10		2.2146	[1.52-2.91] unit increase	Affymetrix [NR] (imputed)	N
800	chr19	28257392	28257393	rs2241024	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	19q11	intergenic	rs2241024-G	0.8	1E-16		1.23	[1.16-1.29]	Illumina [at least 371504] (imputed)	N
802	chr19	28550410	28550411	rs147515995	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	19q11		rs147515995-G	NR	8E-6	(GLM)	11.2777	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
802	chr19	28554580	28554581	rs7260058	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	19q11		rs7260058-T	NR	3E-7		1.09264		Affymetrix, Illumina [62056310] (imputed)	N
802	chr19	28573027	28573028	rs4805054	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q11	POP4	rs4805054-?	NR	2E-6	(lactose)	0.3504275	[0.21-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
803	chr19	28618492	28618493	rs11084843	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	19q12		rs11084843-A	0.56778	4E-6		0.031801	[0.018-0.045] unit decrease	Affymetrix [15580782] (imputed)	N
804	chr19	28719453	28719454	rs35286507	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	19q12		rs35286507-G	0.87	8E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
804	chr19	28721889	28721890	rs11084877	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	19q12	LOC148189	rs11084877-G	0.24	7E-6		1.3157895		Illumina [4903804] (imputed)	N
804	chr19	28821193	28821194	rs117261691	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	19q12	NR	rs117261691-C		7E-6		0.1297	[0.073-0.186] SD units decrease	NR [10700000] (imputed)	N
804	chr19	28827605	28827606	rs4267450	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	19q12	NR	rs4267450-A	0.1767	5E-6		0.1839	[0.11-0.26] unit decrease	Illumina [10677593] (imputed)	N
804	chr19	28827885	28827886	rs59057498	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	19q12		rs59057498-?	NR	8E-6		0.767	[0.683-0.862]	Affymetrix [7975321] (imputed)	N
805	chr19	28848781	28848782	rs1119598	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	19q12	NR	rs1119598-T	0.97	9E-6	(Asian)	0.24	[0.13-0.35] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
805	chr19	28866595	28866596	rs995834	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	19q12	LOC100420587	rs995834-C	0.425	1E-6	(Dominant model)	1.871	[1.364-2.566]	Illumina [733202]	N
805	chr19	28904813	28904814	rs12610303	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	19q12	LOC101927151, LOC100420587	rs12610303-C	0.29	8E-6		0.228	[0.13-0.33] unit decrease	Illumina [6379332] (imputed)	N
805	chr19	28927855	28927856	rs118090245	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	19q12	LOC100420587	rs118090245-?	NR	6E-6		0.5022	[0.2-0.8]	Illumina [NR] (imputed)	N
806	chr19	29012920	29012921	rs8113142	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	LOC148145	rs8113142-?	NR	5E-6	(AAM-CT, Chinese)			Affymetrix [760794]	N
806	chr19	29035555	29035556	rs4141232	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	LOC148145	rs4141232-?	NR	9E-6	(AAM-BR, Chinese)			Affymetrix [760794]	N
806	chr19	29035555	29035556	rs4141232	23593202	Ran S	2013-04-04	PLoS One	Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.	Femoral neck bone geometry and menarche (age at onset)	1,728 European ancestry individuals	501 European ancestry individuals, 826 Chinese ancestry individuals	19q12	LOC148145	rs4141232-?	NR	2E-7	(AAM-CT, EA)			Affymetrix [760794]	N
808	chr19	29236391	29236392	rs2218396	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	19q12	intergenic	rs2218396-?	0.25	4E-6	(model 3)	0.137	NR unit increase	Illumina [628376]	N
808	chr19	29267221	29267222	rs4563143	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	19q12	UQCRFS1	rs4563143-G	0.22927439143135342	6E-6	(EA)	0.2465	[0.14-0.35] unit increase	Illumina [at least 988306] (imputed)	N
808	chr19	29308040	29308041	rs5019727	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q12	NR	rs5019727-A	0.623	9E-9		0.00638303	[0.0042-0.0086] unit decrease	NR [9732723] (imputed)	N
808	chr19	29319705	29319706	rs4805272	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19q12	NR	rs4805272-T	0.351	6E-6		0.099	[0.056-0.142] unit increase	Illumina [up to 1980188] (imputed)	N
808	chr19	29325649	29325650	rs1363326	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19q12	NR	rs1363326-G	0.6495	5E-6		0.0992	[0.056-0.142] unit decrease	Illumina [up to 1980188] (imputed)	N
808	chr19	29359799	29359800	rs1368500441	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19q12		rs1368500441-A	0.005	1E-8		2.65	[1.75-3.55] unit increase	Illumina [110351653]	N
809	chr19	29414630	29414631	rs4805303	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	19q12	Intergenic	rs4805303-?		8E-6				NR [NR]	N
809	chr19	29489041	29489042	rs8102754	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	19q12	intergenic	rs8102754-A	0.454	8E-6	(Temperament)	0.12	[NR] unit increase	Affymetrix [677643]	N
809	chr19	29490696	29490697	rs7250483	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	19q12	Intergenic	rs7250483-?	NR	4E-6				Illumina [9008729] (imputed)	N
810	chr19	29577229	29577230	rs17716275	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	19q12	LINC01532, UQCRSF1	rs17716275-?	NR	5E-6		5.09		Illumina [6778521] (imputed)	N
810	chr19	29579489	29579490	rs191657361	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	19q12	CTD-2081K17.2	rs191657361-G	NR	2E-7		0.02976	[0.019-0.041] unit increase	Illumina [NR] (imputed)	N
811	chr19	29710080	29710081	rs73923591	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	19q12	UQCRFS1	rs73923591-A	NR	6E-7		1.31	[1.24-1.39]	Affymetrix, Illumina [~ 16900000] (imputed)	N
811	chr19	29736341	29736342	rs11083866	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	19q12	intergenic	rs11083866-A	0.26	5E-6		114.77	[NR] unit increase	Illumina [2380200] (imputed)	N
811	chr19	29738640	29738641	rs741449	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	19q12	UQCRFS1, LOC284395	rs741449-T	0.65	6E-6		1.3		Illumina [8974355] (imputed)	N
812	chr19	29787768	29787769	rs73530333	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	19q12	CTC-525D6.1	rs73530333-T	0.12	3E-6		0.14	[0.081-0.199] unit increase	Illumina [NR] (imputed)	N
812	chr19	29828674	29828675	rs73027029	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	19q12	NR	rs73027029-A	0.02	3E-6		0.75	[0.63-0.87]	Illumina [8468885] (imputed)	N
812	chr19	29841166	29841167	rs4591272	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	19q12	NA	rs4591272-G		1E-12		0.0142092	[0.01-0.018] unit increase	Illumina [13288253] (imputed)	N
813	chr19	29903676	29903677	rs12986207	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	19q12	VSTM2B	rs12986207-G	0.817	4E-6		0.044	[0.024-0.064] unit decrease	Illumina [6150213] (imputed)	N
813	chr19	29908106	29908107	rs10425935	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	LOC284395	rs10425935-G	0.099	3E-6	(GLU )	0.02	[NR] mg/dL increase	Illumina [899892]	N
813	chr19	29912293	29912294	rs892073	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	LOC284395	rs892073-A	0.044	8E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
813	chr19	29917651	29917652	rs58013952	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	19q12		rs58013952-T	0.115	6E-6		0.160896	[0.09-0.231] unit increase	Affymetrix, Illumina [538635] (imputed)	N
813	chr19	29934906	29934907	rs79005430	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	19q12	LOC284395	rs79005430-A	0.011	9E-6		0.45	[0.25-0.65] unit increase	Affymetrix [7435577] (imputed)	N
813	chr19	29990065	29990066	rs78770294	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q12	NR	rs78770294-A	0.01045	2E-8	(GPNMB)	0.0694	NR unit increase	Illumina [1671387] (imputed)	N
814	chr19	30016449	30016450	rs117919064	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19q12	VSTM2B	rs117919064-A	0.039469797487603	3E-6	(G_unclassified_C_Clostridia_HB)	0.707198	[0.41-1] unit decrease	Illumina [7711310] (imputed)	N
814	chr19	30021445	30021446	rs117223925	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	19q12	VSTM2B	rs117223925-?	NR	6E-6		1.1111112	[1.06-1.16]	NR [7424691] (imputed)	N
814	chr19	30035888	30035889	rs75540417	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	19q12	NR	rs75540417-?	NR	1E-8		9196.489	NR unit decrease	Illumina [2379855]	N
814	chr19	30068540	30068541	rs139031484	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q12	NR	rs139031484-T	0.01394	7E-12	(AASS)	0.3783	NR unit increase	Illumina [1671387] (imputed)	N
814	chr19	30068540	30068541	rs139031484	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q12	NR	rs139031484-T	0.01394	1E-9	(ABAT)	2.912	NR unit increase	Illumina [1671387] (imputed)	N
814	chr19	30079603	30079604	rs10403021	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	19q12	VSTM2B	rs10403021-C	0.66	2E-6		1.01	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
814	chr19	30086006	30086007	rs10414410	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	19q12	NR	rs10414410-?		5E-6	(males)			Illumina [1211988] (imputed)	N
814	chr19	30100190	30100191	rs189891938	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus abundance in stool	5,959 Finnish ancestry individuals	NA	19q12		rs189891938-C	0.0141248	9E-9		0.14278	[0.094-0.191] unit increase	Illumina [7980478] (imputed)	N
814	chr19	30100318	30100319	rs3786516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19q12		rs3786516-A	NR	2E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
814	chr19	30100318	30100319	rs3786516	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q12		rs3786516-?	NR	6E-11				NR [~ 8900000] (imputed)	N
814	chr19	30104197	30104198	rs7255293	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	19q12	POP4	rs7255293-A	0.58	3E-9		0.363	[0.24-0.48] bpm increase	Affymetrix [~ 7800000] (imputed)	N
814	chr19	30104870	30104871	rs61731483	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	19q12	NR	rs61731483-?	NR	7E-6		1.2875215	[1.15-1.44]	Affymetrix, Illumina [~ 10400000] (imputed)	N
814	chr19	30106249	30106250	rs138123473	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	19q12		rs138123473-?	NR	1E-6		4.33801	[3.75-4.93]	NR [675173]	N
814	chr19	30109532	30109533	rs12986417	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	19q12	POP4, C19orf12	rs12986417-G	0.652614	1E-9		0.0372839	[0.025-0.049] unit increase	Affymetrix [509255] (imputed)	N
814	chr19	30110330	30110331	rs55954001	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19q12	POP4, C19orf12	rs55954001-G	0.822302	1E-9		0.046579	[0.032-0.062] unit decrease	Affymetrix [509255] (imputed)	N
814	chr19	30110330	30110331	rs55954001	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	19q12	POP4, C19orf12	rs55954001-G	0.822346	4E-9		0.0449659	[0.03-0.06] unit decrease	Affymetrix [509255] (imputed)	N
815	chr19	30232337	30232338	rs8107919	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19q12	C19orf12	rs8107919-T	0.203	9E-6		0.0375	[0.021-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
815	chr19	30265234	30265235	rs12461902	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19q12	CCNE1	rs12461902-G	NR	1E-9		0.00820247	[0.0056-0.0108] unit increase	Affymetrix [10061374] (imputed)	N
815	chr19	30272201	30272202	rs12462975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q12		rs12462975-A	NR	6E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
815	chr19	30272201	30272202	rs12462975	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q12	CCNE1	rs12462975-G	0.67034	6E-15		0.0114755	[0.0086-0.0144] unit decrease	Affymetrix [12370749]	N
815	chr19	30272201	30272202	rs12462975	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q12	NA	rs12462975-A	0.3243	1E-25		0.0193	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
815	chr19	30272201	30272202	rs12462975	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q12	NA	rs12462975-A	0.3243	1E-25		0.0193	[0.016-0.023] unit increase	NR [~ 27400000] (imputed)	N
816	chr19	30277728	30277729	rs113701136	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs113701136-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
816	chr19	30277728	30277729	rs113701136	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	19q12	CCNE1	rs113701136-T	0.318913	3E-10		0.053559702	[0.037-0.07] unit increase	Affymetrix [7288503] (imputed)	N
816	chr19	30277728	30277729	rs113701136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q12		rs113701136-?	NR	2E-24				NR [~ 8900000] (imputed)	N
816	chr19	30277728	30277729	rs113701136	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19q12	CCNE1	rs113701136-T	0.32	2E-7		1.07	[1.04-1.09]	Illumina [~ 11500000] (imputed)	N
816	chr19	30277728	30277729	rs113701136	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	19q12	CCNE1	rs113701136-T	0.32	7E-9		1.07	[1.04-1.09] (BCAC)	Illumina [~ 11500000] (imputed)	N
816	chr19	30286450	30286450	rs569541320	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	19q12		rs569541320-GA	0.33	1E-14				NR [NR] (imputed)	N
816	chr19	30286450	30286450	rs569541320	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	19q12		rs569541320-GA	0.33	5E-17		0.014	% increase	NR [NR] (imputed)	N
816	chr19	30286450	30286450	rs569541320	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	19q12		rs569541320-GA	0.33	8E-9		0.012	U/L decrease	NR [NR] (imputed)	N
816	chr19	30286461	30286461	rs145999262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q12		rs145999262-GA	NR	5E-8		0.012	[0.0077-0.0163] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
816	chr19	30286821	30286822	rs17513613	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19q12	NA	rs17513613-T	0.6914	5E-12		0.0125	[0.009-0.016] unit decrease	NR [~ 27400000] (imputed)	N
816	chr19	30286821	30286822	rs17513613	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q12	NA	rs17513613-T	0.6924	6E-25		0.018	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
816	chr19	30286821	30286822	rs17513613	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q12	NR	rs17513613-T	NR	2E-7		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
816	chr19	30286821	30286822	rs17513613	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q12	URI1, C19orf12, PLEKHF1, POP4, VSTM2B, LOC284395	rs17513613-T	0.669846083209904	4E-9		0.01708666	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
816	chr19	30286821	30286822	rs17513613	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q12	CCNE1	rs17513613-C	0.331	5E-6	(EA)	0.015	[0.0085-0.0215] kg/m2 increase	Affymetrix, Illumina [2550021]	N
816	chr19	30286821	30286822	rs17513613	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q12	CCNE1	rs17513613-C	0.326	3E-6		0.015	[0.0088-0.0214] kg/m2 increase	Affymetrix, Illumina [2550021]	N
816	chr19	30289629	30289630	rs62107115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	19q12		rs62107115-A	NR	6E-10		0.0521	[0.036-0.069] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
816	chr19	30289629	30289630	rs62107115	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19q12	NR	rs62107115-A	0.3281	3E-13		0.019282611	[0.014-0.024] unit increase	Affymetrix [10549349] (imputed)	N
816	chr19	30294990	30294991	rs62104477	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19q12	NR	rs62104477-?	NR	7E-6		0.0077834	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
816	chr19	30294990	30294991	rs62104477	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	19q12	CCNE1	rs62104477-T	0.33	1E-9		0.177	[0.12-0.24] unit increase	Affymetrix [~ 9800000] (imputed)	N
816	chr19	30295632	30295633	rs11671136	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	19q12	NR	rs11671136-G	0.765217	4E-6		1.0672358	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
816	chr19	30296852	30296853	rs8102137	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	19q12	CCNE1	rs8102137-C	0.33	1E-11		1.13	[1.09-1.17]	Illumina [462190]	N
816	chr19	30296852	30296853	rs8102137	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	19q12	CCNE1	rs8102137-C	0.33	2E-11		1.13	[1.09-1.17]	Illumina [589299]	N
816	chr19	30297515	30297516	rs59592823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q12		rs59592823-?	NR	2E-9				NR [~ 8900000] (imputed)	N
816	chr19	30300016	30300017	rs62104483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19q12		rs62104483-A	NR	6E-19		0.0202	[0.016-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
816	chr19	30304256	30304260	rs35538222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q12		rs35538222-C	NR	9E-29		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
816	chr19	30304256	30304260	rs35538222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19q12		rs35538222-C	NR	2E-12		0.0158	[0.011-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
816	chr19	30304256	30304260	rs35538222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19q12		rs35538222-C	NR	5E-20		0.0213	[0.017-0.026] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
816	chr19	30304482	30304483	rs997669	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q12	NR	rs997669-C	NR	2E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
816	chr19	30304482	30304483	rs997669	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	19q12		rs997669-C	NR	2E-7		1.0460252	[1.03-1.06]	Affymetrix [7846216] (imputed)	N
816	chr19	30305683	30305684	rs3218036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q12		rs3218036-?	NR	1E-8				NR [~ 8900000] (imputed)	N
816	chr19	30305683	30305684	rs3218036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q12		rs3218036-?	NR	9E-12				NR [~ 8900000] (imputed)	N
816	chr19	30308996	30308997	rs10421341	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs10421341-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
816	chr19	30310301	30310302	rs3218051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q12		rs3218051-?	NR	3E-8				NR [~ 8900000] (imputed)	N
816	chr19	30321560	30321561	rs34331990	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19q12	CCNE1, URI1	rs34331990-T		3E-10		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
816	chr19	30345525	30345526	rs7256148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q12		rs7256148-G	0.497822	1E-9		0.013560885	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr19	30351013	30351014	rs7254068	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q12	Intergenic	rs7254068-T	0.6713	5E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
816	chr19	30351013	30351014	rs7254068	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q12	Intergenic	rs7254068-T	0.6713	5E-9		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
816	chr19	30351174	30351175	rs4805491	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	19q12	CCNE1	rs4805491-T	NR	4E-8		0.45838696	[0.31-0.61] unit decrease	Illumina [> 6200000] (imputed)	N
816	chr19	30371714	30371715	rs34729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q12	Intergenic	rs34729-T	0.4427	8E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
816	chr19	30374571	30374572	rs34704	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs34704-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
816	chr19	30405684	30405685	rs4805497	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	19q12	URI1	rs4805497-A	0.92	5E-8		0.34	[0.22-0.46] mg/dl increase	Illumina [9281895] (imputed)	N
817	chr19	30413968	30413969	rs114837342	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q12	NR	rs114837342-G	0.01568	1E-8	(GALK1)	0.5739	NR unit increase	Illumina [1671387] (imputed)	N
818	chr19	30554950	30554951	rs6509942	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	19q12	NR	rs6509942-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
818	chr19	30610399	30610400	rs7259325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q12	NA	rs7259325-A	0.4826	4E-10		0.0107	[0.0074-0.014] unit decrease	NR [~ 27400000] (imputed)	N
818	chr19	30626711	30626712	rs82790	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	19q12	Intergenic	rs82790-A	0.269	4E-6		0.605	[0.35-0.86] unit decrease	Illumina [622468]	N
818	chr19	30630846	30630847	rs335746	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sweet taste perception in obesity with metabolic syndrome	378 individuals	NA	19q12	intergenic	rs335746-A	0.363	7E-6		0.586	[0.34-0.84] unit decrease	Illumina [622468]	N
819	chr19	30673834	30673835	rs4805525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q12		rs4805525-?	NR	5E-8				NR [~ 8900000] (imputed)	N
819	chr19	30710784	30710785	rs6510033	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	19q12	NR	rs6510033-G	0.2747	5E-8		1.0373445	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
819	chr19	30730694	30730695	rs12983955	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	19q12	URI1, ZNF536	rs12983955-A	0.122	9E-6		0.043	[0.023-0.063] unit decrease	Illumina [7358575] (imputed)	N
819	chr19	30736377	30736378	rs4805531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q12		rs4805531-A	0.7124	2E-14	(conditional-joint)	0.0119	[0.0088-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
819	chr19	30736377	30736378	rs4805531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q12	Intergenic	rs4805531-A	0.7124	9E-17	(MTAG)	0.0121	[0.0094-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
819	chr19	30736377	30736378	rs4805531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q12	Intergenic	rs4805531-A	0.709	7E-12	(MTAG)	0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
819	chr19	30736377	30736378	rs4805531	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q12	NR	rs4805531-?	NR	6E-7		4.997	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
819	chr19	30741256	30741257	rs7254263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q12	Intergenic	rs7254263-T	0.2909	4E-14	(MTAG)	0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
819	chr19	30741256	30741257	rs7254263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q12		rs7254263-T	0.285	2E-14		0.0119	[0.0088-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
819	chr19	30741622	30741623	rs12972995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q12	Intergenic	rs12972995-C	0.2901	2E-9	(MTAG)	0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
819	chr19	30747700	30747701	rs55800473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19q12		rs55800473-?	NR	3E-10				NR [~ 8900000] (imputed)	N
819	chr19	30772255	30772256	rs28633123	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	19q12	ZNF536	rs28633123-T	0.21	7E-7		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
820	chr19	30852083	30852084	rs6510150	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19q12	NR	rs6510150-A	0.2393	6E-10				NR [9056863] (imputed)	N
820	chr19	30857195	30857196	rs6510155	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q12		rs6510155-G	0.25	7E-27		10.73	z score increase	Affymetrix [9061022] (imputed)	N
820	chr19	30857195	30857196	rs6510155	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19q12		rs6510155-G	0.25	6E-13		7.2	z score increase	Affymetrix [9061022] (imputed)	N
820	chr19	30857195	30857196	rs6510155	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q12	NR	rs6510155-G	0.2385	2E-15				NR [9056863] (imputed)	N
820	chr19	30861682	30861683	rs3810304	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19q12	ZNF536	rs3810304-A	0.22577	9E-10		0.0102846	[0.007-0.0136] unit increase	Affymetrix [12370749]	N
820	chr19	30918315	30918316	rs4805566	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	19q12	ZNF536	rs4805566-A	0.67	8E-10		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
820	chr19	30926387	30926388	rs73022822	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs73022822-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
821	chr19	30937842	30937843	rs33428	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	19q12	ZNF536	rs33428-?	NR	1E-6		3.846154	[2.22-6.67]	Illumina [654642] (imputed)	N
821	chr19	30937842	30937843	rs33428	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	19q12	ZNF536	rs33428-G	0.403	3E-6	(Dominant model)	1.375	[1.160-1.629]	Illumina [733202]	N
821	chr19	30939359	30939360	rs33429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs33429-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
821	chr19	30939359	30939360	rs33429	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19q12	ZNF536	rs33429-A	0.696	2E-10		0.0082	[0.0057-0.0107] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
821	chr19	30939988	30939989	rs33431	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	19q12	NR	rs33431-T	NR	4E-8		1.02	[1.01-1.03]	NR [NR] (imputed)	N
821	chr19	30939988	30939989	rs33431	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	19q12	NR	rs33431-T	0.6144	5E-8		1.012	[1.008-1.016]	NR [8098588] (imputed)	N
821	chr19	30943454	30943455	rs33435	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	19q12	ZNF536	rs33435-G	0.4133	2E-6		0.0271	[0.015-0.039] unit decrease	Illumina [1220000] (imputed)	N
821	chr19	30943676	30943677	rs33436	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q12	ZNF536	rs33436-A	0.442	5E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
821	chr19	30945170	30945171	rs33439	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q12	NR	rs33439-C	NR	4E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
821	chr19	30945170	30945171	rs33439	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q12	URI1	rs33439-T	0.605082150787696	2E-8		0.017378407	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
821	chr19	30945170	30945171	rs33439	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q12	ZNF536	rs33439-T	0.608	2E-6	(EA, women)	0.023	[0.014-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
821	chr19	30945170	30945171	rs33439	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q12	ZNF536	rs33439-T	0.606	1E-6	(EA)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
821	chr19	30945170	30945171	rs33439	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q12	ZNF536	rs33439-T	0.604	8E-7		0.018	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
821	chr19	30954687	30954688	rs3786810	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19q12	NR	rs3786810-?	NR	4E-6		1.52	[1.41-1.64]	Illumina [539000] (imputed)	N
821	chr19	30982164	30982165	rs55700449	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	19q12	ZNF536	rs55700449-?	NR	3E-15		1.1764705	[1.13-1.22]	Illumina [13537761] (imputed)	N
821	chr19	30987422	30987423	rs2053079	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	19q12		rs2053079-?	NR	4E-9		0.0177	NR unit increase	NR [4484088] (imputed)	N
821	chr19	30987422	30987423	rs2053079	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	19q12		rs2053079-?	NR	2E-8		0.0207	NR unit increase	NR [4502103] (imputed)	N
821	chr19	30987422	30987423	rs2053079	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	19q12		rs2053079-?	NR	3E-8		0.019	NR unit increase	NR [4428082] (imputed)	N
821	chr19	30987422	30987423	rs2053079	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	19q12	NR	rs2053079-?	NR	2E-9				Illumina [up to 5582932] (imputed)	N
821	chr19	30987422	30987423	rs2053079	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19q12	ZNF536	rs2053079-G	NR	5E-9		1.066098	[1.04-1.09]	Illumina [6627481] (imputed)	N
821	chr19	30987422	30987423	rs2053079	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19q12	ZNF536	rs2053079-G	NR	2E-8	(EA)	1.07446	[1.05-1.1]	Illumina [6627481] (imputed)	N
821	chr19	30987422	30987423	rs2053079	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	19q12	ZNF536	rs2053079-?	NR	2E-10		1.0729614	[1.05-1.09]	Illumina [8000000] (imputed)	N
821	chr19	30987422	30987423	rs2053079	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	19q12	ZNF536	rs2053079-G	NR	5E-9		1.066098	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
821	chr19	30987422	30987423	rs2053079	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19q12	NR	rs2053079-G	NR	2E-9		1.0752687	[NR]	Illumina [7158791] (imputed)	N
821	chr19	30987422	30987423	rs2053079	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	19q12	ZNF536	rs2053079-G	0.231	4E-9		1.0741138	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
821	chr19	30990699	30990700	rs3786800	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		19q12	ZNF536	rs3786800-?	.803	3E-12			[NR]	Affymetrix, Illumina [152234]	N
821	chr19	30995199	30995200	rs55655041	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	19q12	ZNF536	rs55655041-?		7E-6	(PC1)	0.1336	[NR] unit decrease	Illumina [4167292] (imputed)	N
821	chr19	30996524	30996525	rs12459057	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q12	NR	rs12459057-?	NR	7E-17				Affymetrix [NR]	N
821	chr19	31006415	31006416	rs11881766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q12	ZNF536	rs11881766-G	NR	3E-8		0.01821	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
821	chr19	31017176	31017177	rs73026723	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q12	ZNF536	rs73026723-C	0.845759	1E-13		0.0140677	[0.01-0.018] unit increase	Affymetrix [12370749]	N
821	chr19	31019779	31019780	rs11084553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q12		rs11084553-?	NR	1E-18				NR [~ 8900000] (imputed)	N
821	chr19	31028665	31028666	rs10518269	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q12	NR	rs10518269-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
821	chr19	31028665	31028666	rs10518269	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q12	NA	rs10518269-T	0.165	5E-14		0.0173	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
821	chr19	31028665	31028666	rs10518269	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q12	NA	rs10518269-T	0.165	5E-14		0.0173	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
821	chr19	31034673	31034674	rs11666918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q12		rs11666918-?	NR	2E-24				NR [~ 8900000] (imputed)	N
821	chr19	31035685	31035686	rs10418356	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	19q12	intergenic	rs10418356-G	0.03	7E-6		0.257	[0.15-0.37] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
821	chr19	31041052	31041053	rs11671893	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	19q12		rs11671893-T	NR	6E-9		0.02641938	[0.018-0.035] years increase	NR [7400000] (imputed)	N
821	chr19	31041653	31041654	rs55663539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q12		rs55663539-C	NR	5E-12		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
821	chr19	31052953	31052954	rs73026775	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q12	ZNF536, TSHZ3	rs73026775-G	0.8754	2E-8		1.0340675		Affymetrix [11880941] (imputed)	N
822	chr19	31069638	31069639	rs8109875	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria (adjusted for sickle cell variant rs334)	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	19q12	ZNF536	rs8109875-?	NR	4E-6	(Recessive)		[NR]	Illumina [15200000] (imputed)	N
822	chr19	31069638	31069639	rs8109875	29381699	Ravenhall M	2018-01-30	PLoS Genet	Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania.	Severe malaria	449 Tanzanian ancestry cases, 465 Tanzanian ancestry controls	NA	19q12	ZNF536	rs8109875-?	NR	9E-7	(Recessive)	1.9723865	[NR]	Illumina [15200000] (imputed)	N
822	chr19	31079972	31079973	rs12608949	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	19q12	NR	rs12608949-?	NR	4E-8	(Pelotomaculum)	0.213471	[0.14-0.29] unit decrease	Illumina [5293637] (imputed)	N
822	chr19	31097321	31097322	rs139256956	27195708	Scott WR	2016-05-19	PLoS One	Investigation of Genetic Variation Underlying Central Obesity amongst South Asians.	Waist-to-hip ratio adjusted for body mass index	10,318 South Asian ancestry individuals	1,922 South Asian ancestry individuals	19q12	ZNF536	rs139256956-A	0.97	1E-6		0.25	[0.15-0.35] unit decrease	Affymetrix, Illumina, Perlegen [6571328] (imputed)	N
822	chr19	31099889	31099890	rs746961	17903293	Benjamin EJ	2007-09-19	BMC Med Genet	Genome-wide association with select biomarker traits in the Framingham Heart Study.	Select biomarker traits	1,012 European ancestry individuals	NA	19q12	ZNF536	rs746961-?	NR	8E-7	(CRP6)			Affymetrix [70897]	N
822	chr19	31104578	31104579	rs7259428	34719679	Hu SH	2021-10-31	Cell Discov	Discovery of new genetic loci for male sexual orientation in Han population.	Male sexual orientation	521 Han Chinese ancestry homosexual men, 1,270 Han Chinese ancestry heterosexual men	957 Han Chinese ancestry homosexual men, 2,043 Han Chinese ancestry heterosexual men	19q12		rs7259428-G	NR	8E-15		0.65		Illumina [724550] (imputed)	N
822	chr19	31109385	31109386	rs6510172	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q12	NR	rs6510172-?	NR	5E-10		6.218	NR z score decrease	Illumina [at least 830937] (imputed)	N
822	chr19	31118787	31118788	rs77806374	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	19q12		rs77806374-A	0.01	2E-6		0.71	[0.42-1] unit decrease	NR [NR] (imputed)	N
822	chr19	31133256	31133257	rs75889883	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	19q12		rs75889883-C	0.01	4E-9				NR [NR] (imputed)	N
822	chr19	31176390	31176391	rs11878397	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	19q12	NR	rs11878397-T	0.2396	7E-6		0.1906	[0.11-0.27] unit increase	Illumina [NR] (imputed)	N
822	chr19	31185209	31185210	rs16964543	26516778	Bis JC	2015-10-30	PLoS One	Drug-Gene Interactions of Antihypertensive Medications and Risk of Incident Cardiovascular Disease: A Pharmacogenomics Study from the CHARGE Consortium.	Myocardial infarction in hypertension (calcium channel blocker interaction)	Up to 2,114 European ancestry individuals with myocardial infarction, up to 13,261 European ancestry individuals without myocardial infarction	Up to 1,171 European ancestry individuals with myocardial infarction	19q12	ZNF536	rs16964543-T	0.67	4E-7		0.37	unit decrease	Affymetrix, Illumina [1194322] (imputed)	N
823	chr19	31196216	31196216	rs113590643	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19q12	NR	rs113590643-?	NR	8E-6		3.72	[2.87-4.83]	Illumina [539000] (imputed)	N
823	chr19	31200308	31200309	rs56160518	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q12	NR	rs56160518-G	0.411449	6E-11		0.0206719	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
823	chr19	31211646	31211647	rs6510177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19q12	NR	rs6510177-C	NR	2E-11		0.0207	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
823	chr19	31213029	31213030	rs1861777	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	19q12	NR	rs1861777-T	NR	3E-8		5.553	z score decrease	Affymetrix [10847151] (imputed)	N
824	chr19	31347833	31347834	rs62104002	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	19q12	ZNF536, BC040412	rs62104002-A	0.1	4E-7	(African American)	0.2	[0.12-0.28] unit decrease	Illumina [up to 13042663] (imputed)	N
824	chr19	31379108	31379109	rs7245959	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	19q12	TSHZ3	rs7245959-C	0.44	6E-6	(EA)	0.069	[0.04-0.098] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
824	chr19	31379108	31379109	rs7245959	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	19q12	TSHZ3	rs7245959-C	0.43	3E-6		0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
824	chr19	31417221	31417222	rs112578516	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q12	NR	rs112578516-?	NR	7E-6		4.488	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	4E-8	(Lentisphaerae)	3.39474	[2.96-3.83]	Illumina [5293637] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	3E-8	(Victivallis_vadensis)	3.43833	[3-3.88]	Illumina [5293637] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	3E-8	(Victivallis)	3.43833	[3-3.88]	Illumina [5293637] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	3E-8	(Victivallales)	3.43833	[3-3.88]	Illumina [5293637] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	3E-8	(Victivallaceae)	3.43833	[3-3.88]	Illumina [5293637] (imputed)	N
825	chr19	31505210	31505211	rs73030145	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	19q12	NR	rs73030145-?	NR	3E-8	(Lentisphaeria)	3.43833	[3-3.88]	Illumina [5293637] (imputed)	N
826	chr19	31591759	31591760	rs35546881	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q12	NR	rs35546881-A	0.01568	4E-9	(HPD)	1.997	NR unit increase	Illumina [1671387] (imputed)	N
826	chr19	31596777	31596778	rs12459897	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	19q12	TSHZ3	rs12459897-T	NR	8E-7		0.09	[NR] % decrease	Affymetrix, Illumina [NR]	N
826	chr19	31630939	31630940	rs77554113	30034349	Lin E	2018-07-06	Front Psychiatry	A Deep Learning Approach for Predicting Antidepressant Response in Major Depression Using Clinical and Genetic Biomarkers.	Remission after SSRI treatment in major depression	139 Taiwanese ancestry remitted cases, 282 Taiwanese ancestry non-remitted cases	NA	19q12	ZNF536	rs77554113-?	NR	1E-6		4.81	[2.54-9.13]	Illumina [4241701] (imputed)	N
826	chr19	31654614	31654615	rs6510186	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	19q12	NR	rs6510186-T	0.2602	3E-8		0.0677	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
826	chr19	31673387	31673388	rs4804951	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q12	ZNF536, TSHZ3	rs4804951-A	0.3306	4E-9		1.0236759		Affymetrix [11880941] (imputed)	N
826	chr19	31715765	31715766	rs2047335	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19q12		rs2047335-G	0.832	3E-8		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
827	chr19	31774156	31774157	rs145819874	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	26,063 European ancestry men	NA	19q12	TSHZ3	rs145819874-T	NR	6E-7		4.80191	[2.91-6.69] unit decrease	NR [9955952] (imputed)	N
827	chr19	31779695	31779696	rs73035723	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19q12	TSHZ3	rs73035723-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
827	chr19	31780378	31780379	rs36027134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q12	Intergenic	rs36027134-T	0.638	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
827	chr19	31790368	31790369	rs11883258	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	19q12	NR	rs11883258-?	NR	3E-9		0.12893	[0.086-0.171] unit increase	NR [13958389] (imputed)	N
827	chr19	31801129	31801130	rs1078373	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	19q12	TSHZ3	rs1078373-?	0.3707	6E-6	(SSP)			Illumina [475971]	N
827	chr19	31802722	31802723	rs11084579	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	19q12	NR	rs11084579-?	NR	5E-10		0.116846	[0.08-0.154] unit decrease	NR [13958389] (imputed)	N
827	chr19	31802722	31802723	rs11084579	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		19q12	TSHZ3	rs11084579-G	0.666	2E-6		0.014	[0.0081-0.0199] dioptres increase	NR [5901671] (imputed)	N
827	chr19	31812171	31812172	rs16965478	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	19q12	NR	rs16965478-?	NR	4E-6	(AA)	5.32	[4.3-6.34]	Illumina [905956]	N
827	chr19	31828847	31828848	rs11878732	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	19q12	TSHZ3	rs11878732-A	0.645	2E-7	(AA)	0.136	NR unit increase	Illumina [NR] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	19q12	TSHZ3	rs9636166-A	0.8739	2E-6		0.0179	[0.01-0.025] unit increase	Affymetrix [19819130] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	19q12	TSHZ3	rs9636166-A	0.8739	4E-23		0.0355	[0.028-0.043] unit increase	Affymetrix [19819130] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	19q12	TSHZ3	rs9636166-A	0.8739	3E-11		0.0234	[0.017-0.03] unit increase	Affymetrix [19819130] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q12		rs9636166-?	NR	2E-37				NR [~ 8900000] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		19q12	TSHZ3	rs9636166-A	0.87	4E-7	(EA)	0.003	[0.0018-0.0042] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
827	chr19	31829612	31829613	rs9636166	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		19q12	TSHZ3	rs9636166-A	0.86	3E-9		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
827	chr19	31829902	31829903	rs924150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q12		rs924150-C	NR	9E-11		0.0533	[0.037-0.069] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
827	chr19	31829902	31829903	rs924150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q12		rs924150-C	NR	2E-9		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
827	chr19	31835515	31835516	rs4805681	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19q12	NR	rs4805681-C	0.6101	1E-8		0.0269	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
827	chr19	31842001	31842002	rs67361341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19q12		rs67361341-A	NR	7E-9		0.0373	[0.025-0.05] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
827	chr19	31842001	31842002	rs67361341	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19q12	TSHZ3	rs67361341-A	0.388	6E-13		0.0087	[0.0063-0.0111] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
827	chr19	31842001	31842002	rs67361341	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	19q12	TSHZ3	rs67361341-A	0.3787	3E-8		0.011038266	[0.0071-0.015] unit decrease	Illumina [9339358] (imputed)	N
827	chr19	31844548	31844549	rs60950793	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	19q12	NR	rs60950793-T	0.61	3E-8		1.03	[1.02, 1.03]	Affymetrix [39302896] (imputed)	N
827	chr19	31846906	31846907	rs1353531	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		19q12	TSHZ3	rs1353531-T	0.14	5E-8	(EA)	0.003	[0.0018-0.0042] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
827	chr19	31846906	31846907	rs1353531	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	19q12	Intergenic	rs1353531-T	0.817	1E-6	(AA)	0.151	NR unit increase	Illumina [NR] (imputed)	N
827	chr19	31849367	31849368	rs7249887	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	19q12	Intergenic	rs7249887-T	0.81	2E-6	(AA)	0.145	NR unit increase	Illumina [NR] (imputed)	N
827	chr19	31849727	31849728	rs10410601	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19q12	NR	rs10410601-A	NR	4E-8		5.503	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
828	chr19	31865945	31865946	rs2867570	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q12	NR	rs2867570-G	0.5716	2E-11		0.026	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
828	chr19	31867694	31867694	rs11405745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19q12		rs11405745-AT	NR	5E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
828	chr19	31867694	31867694	rs11405745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q12		rs11405745-AT	NR	2E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
828	chr19	31867694	31867694	rs11405745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19q12		rs11405745-AT	NR	6E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
828	chr19	31876691	31876692	rs12971383	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19q12	TSHZ3	rs12971383-A	0.884	1E-9		0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
828	chr19	31891005	31891006	rs2111530	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	19q12	TSHZ3	rs2111530-G	0.39	2E-8		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
828	chr19	31905567	31905568	rs2032905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q12		rs2032905-?	NR	5E-18				NR [~ 8900000] (imputed)	N
828	chr19	31911128	31911129	rs11880316	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	19q12	intergenic	rs11880316-A	0.01	4E-6		0.414	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		4E-8	(EA)	0.342	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		4E-8		0.311	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		4E-10		0.249	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		3E-6		0.173	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		1E-6	(EA)	0.198	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31927546	31927547	rs8105753	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8105753-A		2E-8		0.137	unit increase	Affymetrix [at least 2696785] (imputed)	N
828	chr19	31929179	31929180	rs7248006	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19q12	NR	rs7248006-T	NR	1E-11		6.799	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
828	chr19	31942960	31942961	rs1895471	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q12	ENSG00000267599	rs1895471-A	NR	4E-9		5.899	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
828	chr19	31951493	31951494	rs10401883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q12	Intergenic	rs10401883-T	0.6716	8E-11	(MTAG)	0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr19	31952889	31952890	rs7256776	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	19q12	NR	rs7256776-G	0.303181	1E-9		0.041553523	[0.028-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
828	chr19	31952889	31952890	rs7256776	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19q12	Intergenic	rs7256776-A	0.3267	9E-10		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
828	chr19	31979737	31979737	rs36061463	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	19q12	TSHZ3, THEG5	rs36061463-?	NR	1E-8		1.0626993	[1.04-1.09]	Illumina [13729857] (imputed)	N
829	chr19	32020338	32020339	rs77029180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	19q12	NR	rs77029180-?	NR	9E-6		0.0741	[0.041-0.107] unit increase	Illumina [at least 560000] (imputed)	N
829	chr19	32027329	32027330	rs8102936	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	19q12	TSHZ3, THEG5	rs8102936-G	0.66	2E-11		0.0061	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
829	chr19	32027329	32027330	rs8102936	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	19q12	THEG5	rs8102936-G	0.66	4E-10		0.00646	[0.0044-0.0085] unit increase	Affymetrix [at least 8002429] (imputed)	N
829	chr19	32035890	32035891	rs10164395	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	19q12	THEG5	rs10164395-T	0.33	2E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
829	chr19	32043171	32043175	rs10555080	31127053	Tang Y	2019-05-24	Diabetes	A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.	Diabetic peripheral neuropathy in type 2 diabetes	4,384 European ancestry cases, 784 European ancestry controls	791 European ancestry cases, 158 European ancestry controls, 1,345 African American individuals	19q12	THEG5	rs10555080-A	0.3	3E-7	(EA)	1.34	[1.20-1.50]	Affymetrix, Illumina [6847206] (imputed)	N
829	chr19	32104978	32104979	rs11084596	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	19q12	THEG5	rs11084596-C	0.356	1E-11		0.041	unit decrease	Affymetrix, Illumina [up to 32463442] (imputed)	N
829	chr19	32104978	32104979	rs11084596	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	19q12		rs11084596-T	0.644	4E-24		1.1363636	[1.11-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
829	chr19	32104978	32104979	rs11084596	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	19q12	THEG5	rs11084596-T	0.356	2E-24		1.1363636	[1.11-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
829	chr19	32104978	32104979	rs11084596	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	19q12	THEG5	rs11084596-T	0.61	1E-15		0.0475551	[0.036-0.059] unit increase	Affymetrix [10109774] (imputed)	N
830	chr19	32133938	32133939	rs8182496	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	19q12	NR	rs8182496-?	NR	1E-6		0.0166	[0.0099-0.0233] unit decrease	Illumina [~ 7800000] (imputed)	N
830	chr19	32158463	32158464	rs16966122	23496005	Luca G	2013-03-18	J Sleep Res	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	19q12	NR	rs16966122-?	NR	2E-6	(ESS)	1.601	[NR] unit decrease	NR [NR]	N
830	chr19	32160847	32160848	rs142673685	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	19q12	LOC105372361, THEG5	rs142673685-T	0.01	4E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
830	chr19	32167802	32167803	rs118005503	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19q12	THEG5	rs118005503-G	0.91	7E-9		1.09	[1.06-1.13]	Illumina [20370935] (imputed)	N
830	chr19	32168342	32168343	rs17501397	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q12	NR	rs17501397-C	NR	3E-8		1.079	[1.05-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
830	chr19	32181117	32181118	rs10415992	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	19q12	NR	rs10415992-C	0.9053	8E-9		1.0526316	[1.04-1.07]	Affymetrix, Illumina [10862568] (imputed)	N
830	chr19	32183170	32183171	rs8108822	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	19q12	NR	rs8108822-C	NR	5E-6		0.010479	[0.0059-0.015] unit increase	NR [11010159] (imputed)	N
830	chr19	32183170	32183171	rs8108822	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	19q12	NR	rs8108822-C	NR	6E-10		0.0108729	[0.0074-0.0144] unit increase	NR [11010159] (imputed)	N
830	chr19	32183170	32183171	rs8108822	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	19q12	NR	rs8108822-C	NR	8E-11	(adjusted for BMI)	0.011278	[0.0078-0.0147] unit increase	NR [11010159] (imputed)	N
830	chr19	32200517	32200518	rs11669334	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q12		rs11669334-T	0.17	9E-75		18.29	z score increase	Affymetrix [9061022] (imputed)	N
830	chr19	32200517	32200518	rs11669334	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	19q12	BCL11A	rs11669334-?		2E-11				NR [7428630] (imputed)	N
830	chr19	32200517	32200518	rs11669334	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	19q12	NR	rs11669334-?		4E-23				NR [7428630] (imputed)	N
830	chr19	32200517	32200518	rs11669334	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	19q12	AC021860.1, KLF3	rs11669334-?		8E-11				NR [7428630] (imputed)	N
830	chr19	32200517	32200518	rs11669334	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q12	NR	rs11669334-?		1E-20				NR [7428630] (imputed)	N
830	chr19	32204310	32204311	rs10417470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q12		rs10417470-?	NR	5E-10				NR [~ 8900000] (imputed)	N
830	chr19	32204488	32204489	rs117623407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q12	Intergenic	rs117623407-A	0.8465	1E-8	(MTAG)	0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr19	32204488	32204489	rs117623407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q12	Intergenic	rs117623407-A	0.8465	3E-10	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr19	32204488	32204489	rs117623407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q12		rs117623407-A	0.8536	4E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
830	chr19	32204488	32204489	rs117623407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q12	Intergenic	rs117623407-A	0.8536	7E-11	(MTAG)	0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr19	32207819	32207820	rs2043294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q12		rs2043294-T	0.17	3E-51		15.05	z score increase	Affymetrix [9061022] (imputed)	N
830	chr19	32207819	32207820	rs2043294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19q12		rs2043294-T	0.17	3E-55		15.66	z score increase	Affymetrix [9061022] (imputed)	N
830	chr19	32207819	32207820	rs2043294	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19q12	NR	rs2043294-T	0.18	1E-17				NR [9056863] (imputed)	N
830	chr19	32207819	32207820	rs2043294	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q12	NR	rs2043294-T	0.18	1E-17				NR [9056863] (imputed)	N
830	chr19	32207819	32207820	rs2043294	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	19q12		rs2043294-?	NR	1E-16				NR [9705931] (imputed)	N
830	chr19	32207819	32207820	rs2043294	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q12	NR	rs2043294-?	NR	1E-6		4.896	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
830	chr19	32208908	32208909	rs8102851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q12	Intergenic	rs8102851-T	0.7799	1E-10	(MTAG)	0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr19	32215508	32215509	rs437933	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	19q12	NR	rs437933-?		3E-6		1.5625	[NR]	Illumina [NR] (imputed)	N
832	chr19	32441691	32441692	rs73039771	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.11	NR	rs73039771-C	0.101	1E-8	(PSAP)	0.08954	NR unit increase	Illumina [1671387] (imputed)	N
832	chr19	32451741	32451742	rs8103940	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.11	NR	rs8103940-A	0.478	3E-11		0.00736043	[0.0052-0.0095] unit decrease	NR [9732723] (imputed)	N
832	chr19	32452995	32452996	rs34851357	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19q13.11		rs34851357-T	0.428	6E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
832	chr19	32454471	32454472	rs17691999	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	19q13.11	THEG5	rs17691999-A	0.519	1E-10		0.0076	[0.0052-0.01] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
833	chr19	32583875	32583876	rs2017404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs2017404-C	0.697829	6E-12		0.016558558	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr19	32585185	32585186	rs9304832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.11		rs9304832-?	NR	2E-12				NR [~ 8900000] (imputed)	N
833	chr19	32589598	32589599	rs4804980	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs4804980-T	0.746476	5E-18				Affymetrix, Illumina [24558453] (imputed)	N
833	chr19	32590772	32590773	rs1821295	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19q13.11	AC011518.1	rs1821295-T	0.6998	3E-16		0.1347	[0.1-0.17] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
833	chr19	32593681	32593682	rs7259119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.11	AC011518.1	rs7259119-C	0.646549	2E-13		0.017146941	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr19	32593681	32593682	rs7259119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.11	AC011518.1	rs7259119-C	0.646558	7E-18		0.020035792	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr19	32593681	32593682	rs7259119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.11	NR	rs7259119-C	0.646814	1E-11		0.013849	[0.0099-0.0178] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
833	chr19	32593681	32593682	rs7259119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.11	NR	rs7259119-C	0.646957	7E-20		0.018587	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
833	chr19	32594821	32594822	rs8105292	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	19q13.11	NR	rs8105292-?	NR	1E-6		3.433	NR unit increase	Affymetrix [at least 600000] (imputed)	N
833	chr19	32628366	32628367	rs115709306	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	19q13.11	NR	rs115709306-?	NR	7E-6		16.459	NR unit increase	Affymetrix [at least 600000] (imputed)	N
833	chr19	32631891	32631892	rs8103440	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.11	NR	rs8103440-G	0.03833	5E-10	(RAC2)	0.008983	NR unit increase	Illumina [1671387] (imputed)	N
833	chr19	32634203	32634204	rs78705027	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	19q13.11	NR	rs78705027-?	NR	7E-6		16.459	NR unit increase	Affymetrix [at least 600000] (imputed)	N
834	chr19	32643533	32643534	rs116175387	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	19q13.11	NR	rs116175387-?	NR	7E-6		16.459	NR unit increase	Affymetrix [at least 600000] (imputed)	N
834	chr19	32651765	32651766	rs1981621	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19q13.11		rs1981621-T	0.309	6E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
834	chr19	32661215	32661216	rs76302892	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	19q13.11	NR	rs76302892-?	NR	5E-6		16.109	NR unit increase	Affymetrix [at least 600000] (imputed)	N
834	chr19	32671134	32671135	rs12462959	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.11	NR	rs12462959-G	0.685	5E-10		0.00720791	[0.0049-0.0095] unit decrease	NR [9732723] (imputed)	N
834	chr19	32728345	32728346	rs10425595	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	MGC35440	rs10425595-?	NR	7E-6	(LPC 18:1)	0.19017404	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
835	chr19	32822347	32822348	rs112726905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19q13.11		rs112726905-G	NR	1E-9		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
835	chr19	32824309	32824310	rs7255223	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.11	ZNF507	rs7255223-C	0.735259	9E-9		0.00896737	[0.0059-0.012] unit increase	Affymetrix [12370749]	N
835	chr19	32824309	32824310	rs7255223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.11		rs7255223-A	0.2691	1E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
835	chr19	32824309	32824310	rs7255223	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.11	Intergenic	rs7255223-A	0.2691	1E-9	(MTAG)	0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
835	chr19	32829512	32829513	rs8100891	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	19q13.11	NR	rs8100891-?	NR	2E-9		0.01578	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
835	chr19	32829512	32829513	rs8100891	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	19q13.11	DPY19L3, ZNF507	rs8100891-C	0.7317899999999999	1E-8		5.725	z score increase	Illumina [18485882] (imputed)	N
835	chr19	32829512	32829513	rs8100891	27818178	Hill WD	2016-11-03	Curr Biol	Molecular Genetic Contributions to Social Deprivation and Household Income in UK Biobank.	Household income	96,900 British ancestry individuals	NA	19q13.11	ZNF507	rs8100891-G	NR	3E-8		0.029	unit increase	Affymetrix [~ 17300000] (imputed)	N
835	chr19	32830335	32830336	rs28384181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.11		rs28384181-?	NR	1E-13				NR [~ 8900000] (imputed)	N
835	chr19	32844889	32844890	rs150068736	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	19q13.11	ZNF507	rs150068736-G	0.0	3E-13				Illumina [239042]	N
835	chr19	32854469	32854470	rs4805755	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	19q13.11	ZNF507	rs4805755-?	NR	8E-9				NR [1800000]	N
835	chr19	32874721	32874722	rs7248160	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.11		rs7248160-T	0.5	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
835	chr19	32882019	32882020	rs12976411	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	19q13.11	ZNF507, LOC400684	rs12976411-A	0.09	1E-14	(recessive model)	1.4925373	[1.35-1.67]	Affymetrix, Illumina [8600000] (imputed)	N
835	chr19	32883415	32883416	rs73034216	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	19q13.11	NA	rs73034216-T		9E-10		0.015077	[0.01-0.02] unit decrease	Illumina [13288253] (imputed)	N
835	chr19	32896715	32896716	rs10405382	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	19q13.11	NR	rs10405382-G	NR	7E-11		0.02012	[0.014-0.026] unit decrease	Affymetrix [10847151] (imputed)	N
835	chr19	32896845	32896846	rs10409264	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	19q13.11	ZNF507	rs10409264-A	0.171851	4E-11		6.61	z score decrease	NR [10847151] (imputed)	N
836	chr19	32912621	32912622	rs17832737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19q13.11		rs17832737-G	0.489996	8E-10		0.0124006	[0.0085-0.0163] unit increase	Illumina [13479295] (imputed)	N
836	chr19	32912621	32912622	rs17832737	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.11	DPY19L3	rs17832737-?	NR	3E-9		0.016867088	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
836	chr19	32917454	32917455	rs2111504	19488044	Smith EN	2009-06-02	Mol Psychiatry	Genome-wide association study of bipolar disorder in European American and African American individuals.	Bipolar disorder	1,001 European ancestry cases, 1,033 European ancestry controls, 345 African American cases, 670 African American controls	1,550 European ancestry individuals from 250 families, 1,263 European ancestry cases, 431 European ancestry controls	19q13.11	DPY19L3	rs2111504-T	0.23	2E-6	(AA)	1.74	[NR]	Affymetrix [702044]	N
836	chr19	32968759	32968760	rs35258637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.11		rs35258637-T	NR	3E-14		0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
836	chr19	32972295	32972296	rs3859523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.11		rs3859523-T	0.8208	1E-11		0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
836	chr19	32981165	32981166	rs7257285	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.11		rs7257285-C	0.1791	1E-11	(conditional-joint)	0.0124	[0.0089-0.0159] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
836	chr19	32984883	32984884	rs7250367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q13.11	Intergenic	rs7250367-A	0.8239	4E-8	(MTAG)	0.0119	[0.0076-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
836	chr19	32984883	32984884	rs7250367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.11	Intergenic	rs7250367-A	0.821	1E-11	(MTAG)	0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
836	chr19	32992854	32992855	rs10403370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.11		rs10403370-A	NR	2E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
836	chr19	33004824	33004825	rs358538	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	PDCD5	rs358538-?	NR	8E-6	(betaine)	0.45587307	[0.26-0.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
836	chr19	33010000	33010000	rs138596065	33836062	Kong XZ	2021-04-09	Cereb Cortex	Large-Scale Phenomic and Genomic Analysis of Brain Asymmetrical Skew.	Brain asymmetrical skew (vertical)	33,996 European ancestry individuals	NA	19q13.11	DPY19L3	rs138596065-G		3E-7		0.0011546	[0.00071-0.0016] unit decrease	Affymetrix [9904141] (imputed)	N
837	chr19	33034240	33034241	rs7250377	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	19q13.11	intergenic	rs7250377-T	0.101	8E-16		0.31	[0.24-0.38] unit decrease	Affymetrix [339439]	N
837	chr19	33036829	33036830	rs4805764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19q13.11		rs4805764-G	NR	3E-8		0.0137	[0.0088-0.0186] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
837	chr19	33065110	33065111	rs373448023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.11		rs373448023-T	0.026737	3E-26		0.07414955	[0.06-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr19	33065110	33065111	rs373448023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11		rs373448023-T	0.026708	2E-9		0.043016575	[0.029-0.057] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33070644	33070645	rs71176136	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.11	NR	rs71176136-T	0.674	4E-32	(Programmed cell death protein 5, PDCD5.12517.52.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
837	chr19	33072068	33072069	rs10402931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.11		rs10402931-A	NR	2E-15		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.11	PDCD5	rs10402931-A	0.682925	1E-25		0.025403751	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.11	PDCD5	rs10402931-A	0.683267	2E-17		0.020858077	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11	PDCD5	rs10402931-A	0.682837	3E-21		0.0360462	[0.032-0.04] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.11	PDCD5	rs10402931-A	0.682886	3E-19		0.021845862	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.11	NR	rs10402931-A	0.68438	2E-25		0.0211	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs10402931-A	0.731731	1E-15				Affymetrix, Illumina [21126107] (imputed)	N
837	chr19	33072068	33072069	rs10402931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.11	NR	rs10402931-A	0.682705	1E-15		0.017498	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
837	chr19	33072068	33072069	rs10402931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.11	PDCD5	rs10402931-A	0.679	1E-17		0.03349679	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33072084	33072085	rs10405535	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	19q13.11	PDCD5	rs10405535-A	0.2993	6E-14		0.0122	[0.0091-0.0153] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
837	chr19	33072084	33072085	rs10405535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11	PDCD5	rs10405535-G	0.68373	9E-14		0.020224296	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072084	33072085	rs10405535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11	PDCD5	rs10405535-G	0.683832	7E-13		0.01968125	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072084	33072085	rs10405535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.11	PDCD5	rs10405535-A	0.683783	1E-11		0.0163991	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072084	33072085	rs10405535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11	PDCD5	rs10405535-G	0.68375	4E-27		0.028881714	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33072084	33072085	rs10405535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs10405535-G	0.736412	1E-23				Affymetrix, Illumina [24588908] (imputed)	N
837	chr19	33072084	33072085	rs10405535	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.11	NR	rs10405535-G	NR	3E-10		0.0284022	[0.02-0.037] unit decrease	Affymetrix [16832071] (imputed)	N
837	chr19	33072084	33072085	rs10405535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.11	PDCD5	rs10405535-G	0.6856	3E-10		0.0249646	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33072313	33072314	rs71351177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.11		rs71351177-?	NR	1E-36				NR [~ 8900000] (imputed)	N
837	chr19	33072767	33072768	rs12461589	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19q13.11	PDCD5	rs12461589-T	0.248	5E-10		0.898	[0.86-0.93]	Illumina [11270530] (imputed)	N
837	chr19	33073430	33073431	rs4499344	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFDN5	5,322 Icelandic ancestry individuals	NA	19q13.11		rs4499344-A	0.2796	1E-14		0.130764	[0.098-0.164] unit increase	Illumina [7506463] (imputed)	N
837	chr19	33073430	33073431	rs4499344	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCD5	5,366 Icelandic ancestry individuals	NA	19q13.11		rs4499344-A	0.2796	8E-39		0.266469	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11	PDCD5	rs4499344-A	0.294562	1E-17		0.02340939	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11	PDCD5	rs4499344-A	0.294664	1E-14		0.021194132	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.11	PDCD5	rs4499344-A	0.29497	6E-30		0.028059319	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11	PDCD5	rs4499344-A	0.294622	2E-21		0.0400567	[0.036-0.044] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11	PDCD5	rs4499344-A	0.294618	3E-15		0.021810262	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs4499344-G	0.688493	5E-37				Affymetrix, Illumina [17210439] (imputed)	N
837	chr19	33073430	33073431	rs4499344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.11	NR	rs4499344-G	0.704683	9E-40		0.027904	[0.024-0.032] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
837	chr19	33073430	33073431	rs4499344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.11		rs4499344-?	NR	1E-65				NR [~ 8900000] (imputed)	N
837	chr19	33073430	33073431	rs4499344	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.11	NR	rs4499344-A	0.29140625	5E-22	(PDCD5, 12517_52_3)	0.25526938	[0.2-0.31] unit increase	Illumina [> 1000000] (imputed)	N
837	chr19	33073430	33073431	rs4499344	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.11	NR	rs4499344-A	0.29140625	1E-9	(PFDN5, 4271_75_2)	0.1641191	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
837	chr19	33073430	33073431	rs4499344	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.11	PDCD5	rs4499344-A	0.291	1E-39	(Programmed cell death protein 5, PDCD5.12517.52.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
837	chr19	33073430	33073431	rs4499344	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.11	PDCD5	rs4499344-A	0.2943	3E-9		0.02367493	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33081332	33081333	rs75372982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.11		rs75372982-G	NR	8E-30		0.0271	[0.022-0.032] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
837	chr19	33081332	33081333	rs75372982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.11	PDCD5	rs75372982-G	0.2871	2E-17		0.03352543	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33081332	33081333	rs75372982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.11	PDCD5	rs75372982-G	0.2871	4E-22		0.03815523	[0.03-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33084728	33084729	rs34943133	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs34943133-G	0.973753	3E-42				Affymetrix, Illumina [22063850] (imputed)	N
837	chr19	33084728	33084729	rs34943133	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.11	NR	rs34943133-G	0.972894	4E-46		0.083101	[0.072-0.095] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
837	chr19	33087866	33087867	rs113690530	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	19q13.11	NR	rs113690530-?	NR	2E-6		0.136498	[0.08-0.193] unit increase	Affymetrix [9658292] (imputed)	N
837	chr19	33089430	33089431	rs17692896	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	19q13.11	PDCD5, ANKRD27, RGS9BP, NUDT19	rs17692896-A	0.0739179	7E-7	(% improvement - SSRI treated - 2 weeks)	0.4395	[0.27-0.61] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
837	chr19	33090270	33090271	rs34540877	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.11	ANKRD27	rs34540877-C	NR	4E-8		0.0684043	[0.044-0.093] unit decrease	Affymetrix [16832071] (imputed)	N
837	chr19	33090270	33090271	rs34540877	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.11	ANKRD27	rs34540877-C	0.0271	2E-12		0.07780293	[0.056-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr19	33091681	33091682	rs2903754	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	19q13.11	NR	rs2903754-?		1E-6				Illumina [892589]	N
837	chr19	33093251	33093252	rs3815700	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	19q13.11	ANKRD27	rs3815700-C	0.14	2E-9		1.618	[1.46-1.78]	Illumina [~ 2300000] (imputed)	N
837	chr19	33106620	33106621	rs405858	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19q13.11	ANKRD27	rs405858-T	NR	2E-9		0.89	[0.85-0.93]	Illumina [NR] (imputed)	N
837	chr19	33106620	33106621	rs405858	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	19q13.11	ANKRD27	rs405858-T	NR	2E-8		0.872	[0.82-0.92]	Illumina [5719137] (imputed)	N
837	chr19	33109982	33109983	rs35946544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.11		rs35946544-?	NR	5E-10				NR [~ 8900000] (imputed)	N
837	chr19	33114405	33114406	rs4805780	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	19q13.11	ANKRD27	rs4805780-C	0.40	7E-6	(male)	0.057	[0.032-0.082] unit increase	Illumina [6380737] (imputed)	N
837	chr19	33119741	33119742	rs150101296	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	19q13.11		rs150101296-?	NR	1E-5		4.16104	[3.53-4.79]	NR [663102]	N
837	chr19	33137336	33137337	rs74776662	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	19q13.11	NR	rs74776662-?	NR	8E-6		0.055	[0.031-0.079] unit increase	Illumina [at least 560000] (imputed)	N
837	chr19	33149860	33149861	rs147502994	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	19q13.11		rs147502994-?	NR	2E-9		0.06	[0.08-0.04] unit increase	Illumina [NR]	N
837	chr19	33149860	33149861	rs147502994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19q13.11		rs147502994-?	NR	2E-8				NR [~ 8900000] (imputed)	N
838	chr19	33163042	33163043	rs259282	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	19q13.11	intergenic	rs259282-T	NR	5E-6	(Chinese)	1.0964912	[1.06-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
838	chr19	33170467	33170468	rs12971553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.11	NR	rs12971553-T	NR	7E-10		0.0465	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
838	chr19	33181483	33181484	rs3892630	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	19q13.11	NUDT19	rs3892630-T	0.18	1E-10	(EA, MCV)	0.176	[0.11-0.24] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
838	chr19	33183811	33183812	rs4805801	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.11	SLC7A9	rs4805801-T	0.17	4E-21	(lysine)	0.377	[0.3-0.46] unit increase	Illumina [7750367] (imputed)	N
838	chr19	33190262	33190263	rs35709439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	19q13.11		rs35709439-C	0.812583	7E-13		0.0325649	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
838	chr19	33193161	33193162	rs113282417	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.11	ANKRD27	rs113282417-G	0.9865625	3E-7	(ANKRD27, 12445_50_3)	0.55295587	[0.34-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
838	chr19	33223765	33223766	rs35654350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs35654350-C	NR	7E-11		0.0208	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
838	chr19	33223765	33223766	rs35654350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs35654350-C	NR	6E-11		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
838	chr19	33231027	33231028	rs111959637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.11		rs111959637-G	NR	2E-16		0.0225	[0.017-0.028] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
838	chr19	33231027	33231028	rs111959637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.11	TDRD12	rs111959637-G	0.155879	2E-21		0.030296346	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
838	chr19	33231027	33231028	rs111959637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.11	TDRD12	rs111959637-G	0.155865	7E-18		0.027564807	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
838	chr19	33239987	33239988	rs4254433	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	NUDT19	rs4254433-?	NR	1E-6	(NG monomethyl arginine)	0.18067572	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
839	chr19	33314912	33314913	rs17206198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs17206198-G	NR	8E-15		0.0268	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
839	chr19	33314912	33314913	rs17206198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.11	NR	rs17206198-G	NR	2E-11		0.0233	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr19	33314912	33314913	rs17206198	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs17206198-G	NR	3E-15		0.0273	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr19	33317538	33317539	rs111714445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19q13.11	NR	rs111714445-T	NR	9E-11		0.0485	[0.034-0.063] unit increase	Affymetrix [9000000] (imputed)	N
839	chr19	33317538	33317539	rs111714445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs111714445-T	NR	3E-20		0.0686	[0.054-0.083] unit increase	Affymetrix [9000000] (imputed)	N
839	chr19	33317538	33317539	rs111714445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.11	NR	rs111714445-T	NR	8E-12		0.0511	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr19	33317538	33317539	rs111714445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs111714445-T	NR	2E-21		0.0709	[0.056-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr19	33346432	33346433	rs113178246	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SLC7A9	rs113178246-?	NR	8E-6		1.24	[NR] unit increase	Affymetrix [NR] (imputed)	N
839	chr19	33350059	33350060	rs2868194	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19q13.11	SLC7A9	rs2868194-T	0.4084	9E-12		0.026759	[0.019-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
839	chr19	33351694	33351695	rs2287878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.11		rs2287878-?	NR	2E-11				NR [~ 8900000] (imputed)	N
839	chr19	33353426	33353427	rs79389353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs79389353-T	NR	2E-9		0.0993	[0.067-0.132] unit increase	Affymetrix [9000000] (imputed)	N
839	chr19	33353426	33353427	rs79389353	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs79389353-T	NR	4E-10		0.103	[0.071-0.135] unit decrease	Affymetrix [9000000] (imputed)	N
839	chr19	33356890	33356891	rs12460876	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	Lysine levels	996 European ancestry individuals	NA	19q13.11		rs12460876-C	0.4057	4E-25		0.47798073	unit increase	Illumina [283704]	N
839	chr19	33356890	33356891	rs12460876	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	19q13.11	SLC7A9	rs12460876-C	0.38	2E-17	(homoarginine, lysine, X-24736)	0.007	[0.005-0.009] unit increase	Illumina [7750367] (imputed)	N
839	chr19	33356890	33356891	rs12460876	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.11	SLC7A9	rs12460876-C	0.38	9E-12	(X - 24736)	0.369	[0.26-0.47] unit increase	Illumina [7750367] (imputed)	N
839	chr19	33356890	33356891	rs12460876	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.11	SLC7A9	rs12460876-C	0.38	2E-23	(5-hydroxylysine)	0.65	[0.52-0.78] unit increase	Illumina [7750367] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	9E-17	(Lysine/Tryptophan)	0.350727	[0.27-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	8E-17	(Lysine/Phenylalanine)	0.351713	[0.27-0.43] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	5E-19	(Lysine/Glycine)	0.36788	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	3E-22	(Lysine/Tyrosine)	0.406924	[0.33-0.49] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	3E-17	(Lysine/Asparagine)	0.356427	[0.28-0.44] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	2E-23	(Lysine/Glutamine)	0.415753	[0.34-0.5] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	2E-19	(Lysine/Alanine)	0.378875	[0.3-0.46] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	5E-12	(Lysine)	0.290828	[0.21-0.37] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Fractional excretion of metabolites in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs12460876-C	NR	2E-9	(Lysine)	0.253759	[0.17-0.34] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33356890	33356891	rs12460876	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	19q13.11	SLC7A9	rs12460876-T	NR	3E-12		0.0065	[0.0047-0.0083] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
839	chr19	33356890	33356891	rs12460876	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	19q13.11	SLC7A9	rs12460876-T	0.6	2E-13	(EA)	0.0066	[0.0048-0.0084] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
839	chr19	33356890	33356891	rs12460876	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	19q13.11	CCDC123, ECAT8, SLC7A9	rs12460876-C	0.39	3E-15	(eGFRcrea)	0.01	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
839	chr19	33357432	33357433	rs35975406	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs35975406-C	0.455968	3E-22				Affymetrix, Illumina [24653286] (imputed)	N
839	chr19	33357432	33357433	rs35975406	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs35975406-C	NR	1E-18	(Lysine/Serine)	0.373312	[0.29-0.45] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33358354	33358355	rs7247977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19q13.11		rs7247977-C	NR	2E-22		0.0176	[0.014-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
839	chr19	33358354	33358355	rs7247977	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	19q13.11	SLC7A9	rs7247977-C	0.5359	9E-28		10.918	NR z score increase	Illumina [26237160] (imputed)	N
839	chr19	33358354	33358355	rs7247977	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	19q13.11	SLC7A9	rs7247977-?	NR	1E-8		0.02202	[0.014-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
839	chr19	33358354	33358355	rs7247977	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		19q13.11	SLC7A9	rs7247977-T	NR	2E-12		0.007	[0.0052-0.0088] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
839	chr19	33360368	33360369	rs7252778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.11	NR	rs7252778-A	0.602822	3E-23		0.018727	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
839	chr19	33360368	33360369	rs7252778	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	19q13.11	SLC7A9	rs7252778-A	0.461	3E-17		0.32	[0.14-0.5] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
839	chr19	33360368	33360369	rs7252778	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	19q13.11	SLC7A9	rs7252778-C	NR	6E-22	(Lysine/Threonine)	0.402279	[0.32-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
839	chr19	33362783	33362784	rs10421876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.11		rs10421876-?	NR	2E-15				NR [~ 8900000] (imputed)	N
839	chr19	33364627	33364628	rs8101881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	19q13.11		rs8101881-T	0.338837	5E-10		0.0186909	[0.013-0.025] unit increase	Illumina [13478778] (imputed)	N
839	chr19	33364627	33364628	rs8101881	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19q13.11	NR	rs8101881-T	0.61	5E-18		0.0161	[0.012-0.02] unit decrease	NR [NR]	N
839	chr19	33364627	33364628	rs8101881	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.11	SLC7A9, CEP89	rs8101881-C	0.450458	2E-21	(homocitrulline)	0.203	[0.16-0.24] unit decrease	Illumina [13039987] (imputed)	N
839	chr19	33364627	33364628	rs8101881	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	19q13.11	SLC7A9, CTD-2085J24.4	rs8101881-T	0.643389	1E-12		0.045327	[0.034-0.057] unit increase	Illumina [24961484] (imputed)	N
839	chr19	33364627	33364628	rs8101881	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.11	SLC7A9	rs8101881-T	0.61	1E-16	(homocitrulline)	0.033	[0.025-0.041] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
839	chr19	33364627	33364628	rs8101881	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.11	SLC7A9	rs8101881-T	0.42	2E-33	(1.9025, Lysine)	0.44	[NR] unit increase	Illumina [713870] (imputed)	N
839	chr19	33364627	33364628	rs8101881	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.11	SLC7A9	rs8101881-T	0.42	1E-33	(3.0325, Lysine)	0.45	[NR] unit increase	Illumina [713870] (imputed)	N
839	chr19	33364627	33364628	rs8101881	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.11	SLC7A9	rs8101881-T	0.42	1E-33	(1.7325, Lysine)	0.45	[NR] unit increase	Illumina [713870] (imputed)	N
839	chr19	33364627	33364628	rs8101881	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	CCDC123	rs8101881-?	NR	5E-9	(NG monomethyl arginine)	0.19934595	[0.13-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
839	chr19	33364627	33364628	rs8101881	21572414	Suhre K	2011-05-15	Nat Genet	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry male individuals	1,862 European ancestry individuals	19q13.11	SLC7A9	rs8101881-C	0.35	6E-27	(Lysine/valine ratio)			Affymetrix [645249]	N
839	chr19	33394090	33394091	rs547160925	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	19q13.11	CEP89	rs547160925-G	0.792	4E-23		0.679	[0.54-0.81] unit decrease	Affymetrix [NR] (imputed)	N
839	chr19	33399343	33399344	rs892024	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	19q13.11	NR	rs892024-A	NR	4E-6		0.01072	[0.0061-0.0153] unit decrease	Illumina [~ 540852]	N
839	chr19	33402418	33402419	rs8101667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.11		rs8101667-C	NR	4E-65		0.0286	[0.025-0.032] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
839	chr19	33402418	33402419	rs8101667	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.11	CEP89	rs8101667-T	0.3933	1E-63		0.0044	[0.0038-0.005] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
839	chr19	33402418	33402419	rs8101667	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19q13.11	CEP89	rs8101667-T	0.3327	9E-61		0.005	[0.0042-0.0058] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
839	chr19	33402418	33402419	rs8101667	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	19q13.11	CEP89	rs8101667-C	0.61	2E-6		1.0397172	[1.02-1.06]	Affymetrix, Illumina [9585923] (imputed)	N
839	chr19	33403108	33403108	rs558318035	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		CEP89	rs558318035-?	NR	6E-6		1.16	[NR] unit increase	Affymetrix [NR] (imputed)	N
839	chr19	33411138	33411139	rs10418164	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19q13.11	CEP89	rs10418164-T	0.4547	3E-15		0.0249	[0.019-0.031] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
839	chr19	33411138	33411139	rs10418164	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19q13.11	NR	rs10418164-T	0.5126	6E-11	(men)	0.0329	[0.023-0.043] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
840	chr19	33453658	33453659	rs4805834	20383145	Chambers JC	2010-04-11	Nat Genet	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	19q13.11	SLC7A9	rs4805834-A	0.13	5E-11		1.0	[0.7-1.3] % decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
840	chr19	33458478	33458479	rs62127362	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	19q13.11	CEP89	rs62127362-G	0.87	4E-7		1.1494253	[1.08-1.22]	Affymetrix, Illumina [up to 10786384] (imputed)	N
840	chr19	33466342	33466343	rs111516300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11	C19orf40	rs111516300-T	0.228125	3E-9		0.015591509	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
840	chr19	33467619	33467620	rs7247715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19q13.11	NR	rs7247715-C	NR	1E-11		0.0228	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
840	chr19	33467619	33467620	rs7247715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs7247715-C	NR	4E-31		0.0388	[0.032-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
840	chr19	33467619	33467620	rs7247715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.11	NR	rs7247715-C	NR	2E-21		0.0319	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
840	chr19	33467619	33467620	rs7247715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs7247715-C	NR	1E-32		0.0398	[0.033-0.046] unit increase	Affymetrix [9000000] (imputed)	N
840	chr19	33468066	33468067	rs4805025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs4805025-T	NR	8E-13		0.0199	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
840	chr19	33468066	33468067	rs4805025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.11	NR	rs4805025-T	NR	4E-13		0.0203	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
840	chr19	33487181	33487182	rs11084689	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.11	RHPN2	rs11084689-A	0.2638	1E-10		0.0139218	[0.0097-0.0181] unit increase	NR [13737936] (imputed)	N
840	chr19	33517151	33517152	rs28570619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	19q13.11		rs28570619-A	NR	5E-9		0.1626	[0.11-0.22] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
840	chr19	33517151	33517152	rs28570619	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.11	RHPN2	rs28570619-G	0.954786	4E-43		0.00721969	[0.0061-0.0083] unit decrease	Affymetrix [13995440] (imputed)	N
840	chr19	33517200	33517201	rs17841839	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	19q13.11		rs17841839-C	NR	9E-7		1.3663	NR	Affymetrix [7846216] (imputed)	N
840	chr19	33517514	33517515	rs28626308	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.11	RHPN2	rs28626308-C	0.95655	1E-25		0.0562206	[0.046-0.067] unit decrease	NR [13737936] (imputed)	N
840	chr19	33517514	33517515	rs28626308	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs28626308-?	NR	7E-140		0.126087	[0.12-0.14] unit decrease	Affymetrix [20259828] (imputed)	N
840	chr19	33518717	33518718	rs8112217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.11		rs8112217-G	NR	6E-33		0.0573	[0.048-0.067] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
840	chr19	33519926	33519927	rs28840750	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	19q13.11	RHPN2	rs28840750-T	0.96	2E-8		0.03	unit decrease	Affymetrix [8928767] (imputed)	N
840	chr19	33519926	33519927	rs28840750	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	19q13.11	RHPN2, GPATCH1	rs28840750-T	0.948	4E-23		1.21	[1.17-1.26]	Affymetrix, Illumina [16900397] (imputed)	N
840	chr19	33521149	33521150	rs73039428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	19q13.11		rs73039428-G	0.062521	6E-11		0.0577138	[0.04-0.075] unit increase	Illumina [13474352] (imputed)	N
840	chr19	33524603	33524604	rs73039433	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.11	RHPN2	rs73039433-G	0.953126	1E-32		0.0145396	[0.012-0.017] unit decrease	Affymetrix [13995440] (imputed)	N
840	chr19	33524918	33524919	rs73039434	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	19q13.11	NR	rs73039434-T	NR	2E-18		1.3	[1.22-1.38]	Affymetrix, Illumina [> 10000000] (imputed)	N
840	chr19	33524918	33524919	rs73039434	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.11	RHPN2	rs73039434-C	0.123	3E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
840	chr19	33526947	33526948	rs11880141	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.11	RHPN2	rs11880141-A	0.087	2E-25		10.4	z-score increase	Affymetrix [4311822] (imputed)	N
840	chr19	33526947	33526948	rs11880141	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	19q13.11	RHPN2	rs11880141-?	NR	2E-9		0.668	[0.43-0.9] unit decrease	Affymetrix [11100000] (imputed)	N
840	chr19	33527887	33527888	rs13343954	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	19q13.11	GPATCH1, RHPN2	rs13343954-T	0.857	7E-8		1.183	[NR]	Illumina [NR] (imputed)	N
840	chr19	33532299	33532300	rs10411210	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	19q13.11	RHPN2	rs10411210-C	NR	9E-9	(East Asian)	1.1	[1.07-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
840	chr19	33532299	33532300	rs10411210	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	19q13.11	RHPN2	rs10411210-C	0.83	1E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [up to 10700000] (imputed)	N
840	chr19	33532299	33532300	rs10411210	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	19q13.11	NR	rs10411210-C	0.903	3E-7	(EA)	1.098901	[1.06-1.15]	Affymetrix, Illumina [12931465] (imputed)	N
840	chr19	33532299	33532300	rs10411210	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	19q13.11	NR	rs10411210-C	0.82	3E-6		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 4000000] (imputed)	N
840	chr19	33532299	33532300	rs10411210	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	19q13.11	RHPN2	rs10411210-C	0.82	3E-6	(East Asian)	1.12	[1.07-1.17]	Affymetrix, Illumina [2400000] (imputed)	N
840	chr19	33532299	33532300	rs10411210	19011631	Houlston RS	2008-11-16	Nat Genet	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	19q13.11	RHPN2	rs10411210-C	0.90	5E-9		1.15	[1.10-1.20]	Illumina [up to 548586]	N
840	chr19	33546282	33546283	rs2003950	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	19q13.11	RHPN2	rs2003950-A		1E-7		0.21	[0.13-0.29] unit increase	Illumina [NR] (imputed)	N
840	chr19	33548025	33548026	rs35713211	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs35713211-?	NR	5E-86		0.0431125	[0.039-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
840	chr19	33548025	33548026	rs35713211	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs35713211-CA	0.719945	4E-27	(women)	0.0570721	[0.046-0.068] unit decrease	NR [17166351] (imputed)	N
840	chr19	33548025	33548026	rs35713211	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs35713211-CA	0.719754	3E-43		0.0530043	[0.045-0.061] unit decrease	NR [17166351] (imputed)	N
840	chr19	33548025	33548026	rs35713211	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs35713211-CA	0.719535	1E-20	(men)	0.0514877	[0.04-0.063] unit decrease	NR [17166351] (imputed)	N
840	chr19	33549774	33549775	rs7255601	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs7255601-?	NR	4E-226		0.112637	[0.11-0.12] unit decrease	Affymetrix [20259828] (imputed)	N
840	chr19	33549774	33549775	rs7255601	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs7255601-G	0.906519	7E-36	(men)	0.101984	[0.085-0.119] unit decrease	NR [17166351] (imputed)	N
840	chr19	33549774	33549775	rs7255601	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs7255601-G	0.906494	2E-79		0.106502	[0.095-0.118] unit decrease	NR [17166351] (imputed)	N
840	chr19	33549774	33549775	rs7255601	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.11	RHPN2	rs7255601-G	0.906472	7E-48	(women)	0.113616	[0.098-0.129] unit decrease	NR [17166351] (imputed)	N
840	chr19	33549776	33549777	rs6510338	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q13.11	RHPN2, GPATCH1, WDR88	rs6510338-?		4E-23				NR [7428630] (imputed)	N
840	chr19	33551060	33551061	rs1559088	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	19q13.11	RHPN2, GPATCH1	rs1559088-T	0.25	8E-8		0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
840	chr19	33551427	33551428	rs11881367	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.11	RHPN2	rs11881367-G	0.908443	2E-111		0.0856143	[0.078-0.093] unit decrease	NR [13737936] (imputed)	N
840	chr19	33551427	33551428	rs11881367	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs11881367-?	NR	3E-226		0.112692	[0.11-0.12] unit decrease	Affymetrix [20259828] (imputed)	N
841	chr19	33556889	33556890	rs8104911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.11		rs8104911-?	NR	1E-226				NR [~ 8900000] (imputed)	N
841	chr19	33557411	33557412	rs8106453	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	19q13.11	RHPN2	rs8106453-T	0.254589	3E-11		0.0662	[0.047-0.086] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
841	chr19	33557411	33557412	rs8106453	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	19q13.11	RHPN2	rs8106453-T	0.254589	3E-8		0.0476	[0.031-0.064] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
841	chr19	33560297	33560298	rs8104519	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	19q13.11	ADAMTS9	rs8104519-?		2E-18				NR [7428630] (imputed)	N
841	chr19	33560297	33560298	rs8104519	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	19q13.11	USP46, ERVMER34-1, RASL11B, SCFD2	rs8104519-?		3E-18				NR [7428630] (imputed)	N
841	chr19	33562806	33562807	rs7255229	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.11	NR	rs7255229-?	NR	5E-13	(X3rd ventricle)			NR [9227495] (imputed)	N
841	chr19	33563189	33563190	rs11672313	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.11	NR	rs11672313-?	NR	1E-14	(X3rd ventricle)			NR [9227495] (imputed)	N
841	chr19	33565343	33565344	rs60575064	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	19q13.11	CDK6	rs60575064-?		3E-38				NR [7428630] (imputed)	N
841	chr19	33567450	33567450	rs368001049	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.11	NR	rs368001049-?	NR	6E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
841	chr19	33569746	33569747	rs12460389	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.11	GPATCH1	rs12460389-T	0.833239	2E-41		0.0342028	[0.029-0.039] unit decrease	NR [13737936] (imputed)	N
841	chr19	33575063	33575064	rs7252505	28295283	Wang H	2017-03-13	Int J Cancer	Novel colon cancer susceptibility variants identified from a genome-wide association study in African Americans.	Colorectal cancer	1,894 African American ancestry cases, 4,703 African American ancestry controls.	891 African American ancestry cases, 1,150 African American ancestry controls, 1,611 Hispanic ancestry cases, 4,330 Hispanic ancestry controls.	19q13.11	GPATCH1	rs7252505-G	0.38	4E-8		1.19	[1.12-1.27]	Illumina [10050748] (imputed)	N
841	chr19	33585219	33585220	rs58636263	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	19q13.11	GPATCH1	rs58636263--	0.34	4E-7		0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
841	chr19	33585219	33585220	rs58636263	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	19q13.11	GPATCH1	rs58636263--	0.33	3E-7	(female)	0.09	[0.051-0.129] unit increase	Illumina [11973598] (imputed)	N
841	chr19	33585219	33585219	rs756893948	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs756893948-?	NR	3E-151		0.0660318	[0.061-0.071] unit decrease	Affymetrix [20259828] (imputed)	N
841	chr19	33595389	33595390	rs17884930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.11		rs17884930-?	NR	1E-23				NR [~ 8900000] (imputed)	N
841	chr19	33599126	33599127	rs10416218	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	19q13.11	GPATCH1	rs10416218-T	0.73	7E-11		0.04	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
841	chr19	33604530	33604531	rs8103733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.11	NR	rs8103733-T	NR	1E-13		0.0292	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
841	chr19	33604530	33604531	rs8103733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.11	NR	rs8103733-T	NR	9E-11		0.0255	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
841	chr19	33605299	33605300	rs10416265	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11	GPATCH1	rs10416265-?	NR	3E-153				Affymetrix [20259828] (imputed)	N
841	chr19	33605299	33605300	rs10416265	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	19q13.11	GPATCH1	rs10416265-G	0.28	2E-13	(BUA)	0.06	[0.05-0.08] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
841	chr19	33605299	33605300	rs10416265	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	19q13.11	GPATCH1	rs10416265-G	0.35	4E-12	(VOS)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [up to 2609590] (imputed)	N
841	chr19	33605311	33605312	rs10421769	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	19q13.11	NR	rs10421769-C	0.3275	6E-6		0.4201	NR	Illumina [5393447] (imputed)	N
841	chr19	33613707	33613708	rs10410232	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	19q13.11	NR	rs10410232-?	NR	9E-7		0.091064	[0.055-0.127] unit increase	Affymetrix [9658292] (imputed)	N
842	chr19	33705454	33705455	rs12609177	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.11		rs12609177-?	NR	9E-12		0.0156522	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
842	chr19	33713927	33713928	rs8106493	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	19q13.11	SLC7A10	rs8106493-T	0.20	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
842	chr19	33713927	33713928	rs8106493	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	19q13.11	SLC7A10	rs8106493-T	0.20	1E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
842	chr19	33718052	33718053	rs11671925	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	19q13.11	CEBPA, SLC7A10	rs11671925-G	0.8255	6E-13		1.0526316	[1.04-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
842	chr19	33721454	33721455	rs10414065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.11	SLC7A10	rs10414065-T	0.066514	8E-15		0.0350927	[0.026-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33721454	33721455	rs10414065	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19q13.11	SLC7A10	rs10414065-T	NR	4E-6		1.0884947	NR	Affymetrix, Illumina [8278136] (imputed)	N
842	chr19	33721454	33721455	rs10414065	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	19q13.11	LRP3, CEBPA	rs10414065-C	0.934	6E-9		1.207	[1.133-1.287]	Affymetrix [10894596] (imputed)	N
842	chr19	33721454	33721455	rs10414065	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	19q13.11	LRP3, CEBPA	rs10414065-C	0.934	1E-6		1.108	[1.064-1.155]	Affymetrix [10894596] (imputed)	N
842	chr19	33721454	33721455	rs10414065	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	19q13.11	SLC7A10	rs10414065-?	NR	3E-10		1.098901		NR [74888535] (imputed)	N
842	chr19	33721454	33721455	rs10414065	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	19q13.11	SLC7A10	rs10414065-?	NR	3E-8		1.1235955	[1.08-1.18]	Affymetrix [74888535] (imputed)	N
842	chr19	33721454	33721455	rs10414065	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	19q13.11	SLC7A10, CEBPA	rs10414065-C	0.92	6E-18		1.098	[1.08-1.12]	Affymetrix, Illumina [8307659] (imputed)	N
842	chr19	33726576	33726577	rs118013485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.11	NR	rs118013485-A	0.06696	2E-16		0.033602	[0.026-0.042] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
842	chr19	33726576	33726577	rs118013485	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19q13.11	SLC7A10	rs118013485-G	0.93	9E-28				NR [> 9500000] (imputed)	N
842	chr19	33726576	33726577	rs118013485	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	19q13.11	NR	rs118013485-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33726576	33726577	rs118013485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	19q13.11		rs118013485-?	NR	1E-19				NR [~ 8900000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	19q13.11		rs117710327-A	NR	6E-9		0.1088	[0.072-0.145] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	19q13.11		rs117710327-A	NR	2E-9		0.1213	[0.082-0.161] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	19q13.11		rs117710327-A	NR	3E-18		0.1567	[0.12-0.19] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.11		rs117710327-A	NR	1E-13		0.0257	[0.019-0.033] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	19q13.11		rs117710327-A	NR	3E-14		0.1093	[0.081-0.138] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
842	chr19	33726577	33726578	rs117710327	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	19q13.11	SLC7A10, CEBPA	rs117710327-A	0.0669584448457529	4E-21		0.12640607	[0.1-0.15] unit decrease	Affymetrix [35186738] (imputed)	N
842	chr19	33726577	33726578	rs117710327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.11		rs117710327-A	0.066736	4E-16		0.036774743	[0.028-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33726577	33726578	rs117710327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs117710327-A	0.0614991	5E-14				Affymetrix, Illumina [19872809] (imputed)	N
842	chr19	33726577	33726578	rs117710327	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19q13.11	SLC7A10	rs117710327-C	0.932776	2E-29		1.1477265	1.12050268334324-1.17561172721212]	NR [9572556] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	19q13.11	SLC7A10, LRP3, TRT-AGT1-3, WDR88, CEBPA, CEBPA-AS1	rs117710327-C	0.93305	1E-23		1.1380448	[1.11-1.16]	Affymetrix [32463443] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	19q13.11	NR	rs117710327-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	19q13.11	NR	rs117710327-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	19q13.11	NR	rs117710327-?	NR	7E-15				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	19q13.11	SLC7A10	rs117710327-C	0.932878	1E-21		1.1269535	[1.1-1.15]	Affymetrix [8274727] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	19q13.11	NR	rs117710327-C	0.93779	4E-18		1.116196	[1.09-1.14]	Affymetrix [15688218] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	19q13.11	SLC7A10	rs117710327-A	0.06221	3E-23				Affymetrix [15688218] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	19q13.11	NR	rs117710327-C	0.93779	3E-25		1.1282861	[1.1-1.15]	Affymetrix [15688218] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	19q13.11	SLC7A10	rs117710327-A	0.0620109	2E-9		0.14142744	[0.096-0.187] unit decrease	Affymetrix [7288503] (imputed)	N
842	chr19	33726577	33726578	rs117710327	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	19q13.11	SLC7A10	rs117710327-A	0.0616022	6E-18		0.16329542	[0.13-0.2] unit decrease	Affymetrix [7288503] (imputed)	N
842	chr19	33726577	33726578	rs117710327	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	19q13.11	SLC7A10, CEBPA	rs117710327-?	NR	3E-29		1.196	[1.16-1.23]	Affymetrix [9000000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	19q13.11	SLC7A10, CEBPA	rs117710327-?	NR	3E-18		1.134	[1.11-1.16]	Affymetrix [9000000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	19q13.11	SLC7A10, CEBPA	rs117710327-C	NR	1E-27		1.162	[1.13-1.19]	Affymetrix [9000000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	19q13.11		rs117710327-?	NR	9E-24				NR [~ 8900000] (imputed)	N
842	chr19	33726577	33726578	rs117710327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.11		rs117710327-?	NR	2E-20				NR [~ 8900000] (imputed)	N
842	chr19	33726809	33726810	rs3922671	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19q13.11	intergenic	rs3922671-A	0.4415	1E-12		0.02603356	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33731550	33731551	rs17694108	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	19q13.11	Intergenic	rs17694108-?		1E-8				Illumina [9578670] (imputed)	N
842	chr19	33731550	33731551	rs17694108	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	19q13.11	Intergenic	rs17694108-?		1E-12				Illumina [9725440] (imputed)	N
842	chr19	33731550	33731551	rs17694108	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	19q13.11	Intergenic	rs17694108-?		1E-9				Illumina [9560910] (imputed)	N
842	chr19	33731550	33731551	rs17694108	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.11	NR	rs17694108-A	0.2797	6E-12	(EA)	1.1005878	[1.07-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
842	chr19	33731550	33731551	rs17694108	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.11	NR	rs17694108-A	0.2797	1E-14	(EA)	1.089548	[1.07-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
842	chr19	33731550	33731551	rs17694108	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.11	NR	rs17694108-A	0.2797	3E-9	(EA)	1.0828425	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
842	chr19	33731550	33731551	rs17694108	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19q13.11	CEBPG	rs17694108-A	0.282	6E-15		1.1	[1.065-1.135]	Affymetrix, Illumina [1230000] (imputed)	N
842	chr19	33739725	33739726	rs55779678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.11	intergenic	rs55779678-C	0.8298	2E-58		0.07740112	[0.068-0.087] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33740290	33740291	rs73043117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11		rs73043117-T	0.03171	3E-12		0.045472756	[0.033-0.058] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33742437	33742438	rs7251615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11		rs7251615-A	0.184183	3E-26		0.032206517	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33742625	33742626	rs73926277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs73926277-T	0.335739	2E-46		0.03566963	[0.031-0.041] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33742997	33742998	rs78476878	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.11	intergenic	rs78476878-G	0.1847	4E-15		0.03624091	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33742997	33742998	rs78476878	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.11	intergenic	rs78476878-G	0.1847	4E-13		0.03354856	[0.024-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33750117	33750118	rs11668482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11		rs11668482-T	0.092515	1E-35		0.030616	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33750117	33750118	rs11668482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11		rs11668482-T	0.092517	2E-37		0.0505301	[0.043-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33750313	33750314	rs10500264	19915574	Imielinski M	2009-11-15	Nat Genet	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	19q13.11	intergenic	rs10500264-?	0.18	4E-10		1.21	[1.11-1.31]	Illumina [~ 500000]	N
842	chr19	33750392	33750393	rs7255661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19q13.11		rs7255661-A	0.511129	6E-12		0.0224711	[0.016-0.029] unit increase	Illumina [13479135] (imputed)	N
842	chr19	33750392	33750393	rs7255661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11		rs7255661-A	0.770728	9E-37		0.03529847	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33750392	33750393	rs7255661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.11	intergenic	rs7255661-A	0.7713	2E-20		0.03924817	[0.031-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33750392	33750393	rs7255661	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.11	intergenic	rs7255661-A	0.7712	6E-21		0.03986431	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751174	33751175	rs144753588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	19q13.11	NR	rs144753588-G	0.981324	3E-10		0.111536	[0.077-0.146] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
842	chr19	33751348	33751349	rs55737395	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGLL1	5,368 Icelandic ancestry individuals	NA	19q13.11		rs55737395-A	0.2492	2E-12		0.158	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
842	chr19	33751348	33751349	rs55737395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.11	SLC7A10	rs55737395-G	0.664891	3E-10		0.0133153	[0.0092-0.0175] unit increase	Affymetrix [NR] (imputed)	N
842	chr19	33751348	33751349	rs55737395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.11	NR	rs55737395-A	0.336195	6E-10		0.00501906	[0.0033-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
842	chr19	33751348	33751349	rs55737395	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.11	NR	rs55737395-A	0.336195	1E-8		0.0051702	[0.0032-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
842	chr19	33751851	33751852	rs12151289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.11		rs12151289-C	NR	9E-26		0.0723	[0.059-0.086] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.11		rs12151289-C	0.030438	3E-13		0.049130972	[0.036-0.062] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.11		rs12151289-C	0.030443	2E-60		0.11043153	[0.097-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.11		rs12151289-C	0.030456	1E-47		0.09628296	[0.083-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.11		rs12151289-C	0.030423	2E-30		0.07680261	[0.064-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.11		rs12151289-C	0.030429	5E-29		0.074686706	[0.062-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs12151289-C	0.0298031	5E-44				Affymetrix, Illumina [23467995] (imputed)	N
842	chr19	33751851	33751852	rs12151289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.11	NR	rs12151289-C	0.030775	1E-46		0.08528	[0.074-0.097] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	2E-66		0.1770172	[0.16-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	8E-19		0.09254278	[0.072-0.113] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	3E-18		0.09140463	[0.071-0.112] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	5E-18		0.0907048	[0.07-0.111] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	4E-72		0.1830832	[0.16-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33751851	33751852	rs12151289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.11	intergenic	rs12151289-C	0.0316	8E-70		0.1817055	[0.16-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33752658	33752658	rs79966604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11		rs79966604-GGT	0.33642	9E-59		0.0141099	[0.0098-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33752658	33752658	rs79966604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11		rs79966604-GGT	0.336436	2E-55		0.038955804	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33752919	33752920	rs4432367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.11		rs4432367-T	0.600748	8E-10		0.014317978	[0.0098-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33752993	33752994	rs4530278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.11		rs4530278-T	NR	3E-15		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
842	chr19	33752993	33752994	rs4530278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.11		rs4530278-T	0.600737	3E-16		0.01852535	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33752993	33752994	rs4530278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.11		rs4530278-T	0.600749	7E-18		0.019516617	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33752993	33752994	rs4530278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs4530278-T	0.57646	4E-17				Affymetrix, Illumina [23472807] (imputed)	N
842	chr19	33752993	33752994	rs4530278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.11	NR	rs4530278-T	0.598216	5E-18		0.017139	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
842	chr19	33753165	33753166	rs2081048	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.11	CTD-2540B15.12	rs2081048-C	0.344	1E-12	(Immunoglobulin lambda-like polypeptide 1, IGLL1.6485.59.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
842	chr19	33753554	33753555	rs4616402	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	19q13.11	SLC7A10, CEBPA	rs4616402-A	NR	1E-15		1.517		Illumina [592007] (imputed)	N
842	chr19	33754043	33754044	rs10408351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.11		rs10408351-A	0.224363	6E-18		0.023371551	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33754043	33754044	rs10408351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.11		rs10408351-A	0.224356	1E-10		0.01787518	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33754395	33754396	rs138535856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19q13.11		rs138535856-A	0.020316	2E-17		0.11584	[0.089-0.142] unit decrease	Illumina [13476266] (imputed)	N
842	chr19	33754395	33754396	rs138535856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19q13.11		rs138535856-A	0.020408	7E-18		0.118	[0.091-0.145] unit decrease	Illumina [13476299] (imputed)	N
842	chr19	33754395	33754396	rs138535856	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	19q13.11	NR	rs138535856-G	0.982593	1E-10		0.116082	[0.081-0.152] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
842	chr19	33754547	33754548	rs78744187	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPSB2;TPSAB1	5,362 Icelandic ancestry individuals	NA	19q13.11		rs78744187-T	0.1002	3E-18		0.267628	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
842	chr19	33754547	33754548	rs78744187	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIT	5,363 Icelandic ancestry individuals	NA	19q13.11		rs78744187-T	0.1002	1E-20		0.290576	[0.23-0.35] unit increase	Illumina [7506463] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	NR	4E-107		0.0787	[0.072-0.086] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	NR	6E-118		0.0959	[0.088-0.104] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	NR	3E-115		0.0947	[0.087-0.103] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	NR	1E-21		0.0327	[0.026-0.039] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	0.018842	7E-49		0.274634	[0.24-0.31] unit decrease	Illumina [13469940] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	19q13.11		rs78744187-T	NR	7E-43		0.0495	[0.042-0.057] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	19q13.11		rs78744187-T	0.9177	6E-35		0.2656	[0.22-0.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
842	chr19	33754547	33754548	rs78744187	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	19q13.11		rs78744187-C	0.918	8E-107		0.44	[0.4-0.48] % increase	Affymetrix [NR] (imputed)	N
842	chr19	33754547	33754548	rs78744187	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red blood cell count	20,220 Amish, White ancestry individuals, 384 Asian ancestry individuals, 10,747 Black individuals, 13,119 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19q13.11		rs78744187-T	NR	9E-10		0.04	[0.02-0.06] unit increase	Illumina [92652022]	N
842	chr19	33754547	33754548	rs78744187	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19q13.11		rs78744187-T	NR	2E-12		0.5	[0.36-0.64] unit decrease	Illumina [97506867]	N
842	chr19	33754547	33754548	rs78744187	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	19q13.11		rs78744187-T	NR	8E-11		0.19	[0.13-0.25] unit decrease	Illumina [94681438]	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081182	2E-79		0.09052517	[0.081-0.1] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081188	3E-18		0.03590908	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081182	3E-14		0.03128511	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081233	4E-92		0.08445404	[0.076-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081163	1E-91		0.08795147	[0.079-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081199	2E-210		0.108552	[0.1-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081181	9E-188		0.12174543	[0.11-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081199	2E-20		0.03735728	[0.029-0.045] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.11		rs78744187-T	0.08118	7E-23		0.040063083	[0.032-0.048] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081221	2E-85		0.0803658	[0.072-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.11		rs78744187-T	0.081217	3E-87		0.08124995	[0.073-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0666785	4E-166				Affymetrix, Illumina [24332387] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.082044	1E-162		0.096285	[0.089-0.103] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0669535	3E-18				Affymetrix, Illumina [24588908] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.082055	2E-18		0.030914	[0.024-0.038] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0688971	3E-203				Affymetrix, Illumina [24246363] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.082048	9E-202		0.105392	[0.099-0.112] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0689539	9E-185				Affymetrix, Illumina [20825802] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.082053	9E-186		0.102368	[0.095-0.109] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0675243	3E-31				Affymetrix, Illumina [24558453] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.082005	6E-32		0.04176	[0.035-0.049] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	19q13.11	NR	rs78744187-C	0.982045	2E-26		0.273472	[0.22-0.32] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.0718503	2E-289				Affymetrix, Illumina [19905671] (imputed)	N
842	chr19	33754547	33754548	rs78744187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.11	NR	rs78744187-T	0.081739	4E-263		0.130213	[0.12-0.14] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
842	chr19	33754547	33754548	rs78744187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.11		rs78744187-?	NR	3E-160				NR [~ 8900000] (imputed)	N
842	chr19	33754547	33754548	rs78744187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.11		rs78744187-?	NR	1E-171				NR [~ 8900000] (imputed)	N
842	chr19	33754547	33754548	rs78744187	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (basophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	19q13.11	CEBPA	rs78744187-C	0.916	2E-10		0.267	[0.18-0.35] unit increase	Illumina [27887661] (imputed)	N
842	chr19	33754547	33754548	rs78744187	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Basophil count	5,578 European ancestry individuals	NA	19q13.11	CEBPA	rs78744187-?	0.104	6E-38		0.0059	[NR] 1,000/?L decrease	NR [16536512] (imputed)	N
842	chr19	33754547	33754548	rs78744187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.11	intergenic	rs78744187-T	0.0816	2E-12		0.04600286	[0.033-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754547	33754548	rs78744187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19q13.11	intergenic	rs78744187-T	0.0818	5E-51		0.09754037	[0.085-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754547	33754548	rs78744187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.11	intergenic	rs78744187-T	0.0817	6E-73		0.1163099	[0.1-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754547	33754548	rs78744187	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.11	intergenic	rs78744187-T	0.0817	7E-72		0.1157145	[0.1-0.13] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754670	33754671	rs34610286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19q13.11	intergenic	rs34610286-T	0.099	3E-10		0.03761852	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754670	33754671	rs34610286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19q13.11	intergenic	rs34610286-T	0.099	1E-11		0.04024345	[0.029-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33754937	33754938	rs7253706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.11		rs7253706-A	0.146449	4E-9		0.018749705	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33755083	33755084	rs7253959	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	19q13.11	SLC7A10, CEBPA	rs7253959-?	NR	3E-13		0.04642	[0.034-0.059] unit increase novel	Illumina [6108953] (imputed)	N
842	chr19	33755363	33755364	rs12975577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11		rs12975577-T	0.476974	2E-29		0.026932323	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33755438	33755439	rs34129834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs34129834-C	0.224573	7E-14		0.024665788	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33755438	33755439	rs34129834	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19q13.11	intergenic	rs34129834-C	0.2262	5E-39		0.05546477	[0.047-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33755438	33755439	rs34129834	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19q13.11	intergenic	rs34129834-C	0.2261	3E-42		0.05739144	[0.049-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33756609	33756610	rs74257369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.11	intergenic	rs74257369-G	0.2303	4E-47		0.06058733	[0.052-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33757061	33757062	rs736289	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	19q13.11	intergenic	rs736289-T	0.612	9E-9		1.06	[1.02-1.11]	Affymetrix, Illumina [953241] (imputed)	N
842	chr19	33757869	33757870	rs10413698	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.11	intergenic	rs10413698-G	0.4673	4E-19		0.0314912	[0.025-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33758200	33758201	rs10412166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.11		rs10412166-A	0.430302	1E-33		0.027676174	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33758347	33758348	rs10412449	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.11	intergenic	rs10412449-A	0.4296	3E-9		0.02145637	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33758600	33758601	rs10413103	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.11	intergenic	rs10413103-C	0.6858	3E-11		0.02579829	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33758748	33758749	rs2112801	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs2112801-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33759239	33759240	rs958483	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	19q13.11		rs958483-?	0.9385	2E-11		0.044	[0.031-0.057] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
842	chr19	33759239	33759240	rs958483	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	17,412 Hispanic or Latin American individuals	NA	19q13.11		rs958483-?	0.9272	5E-7		0.0423	[0.026-0.059] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
842	chr19	33759239	33759240	rs958483	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	19q13.11		rs958483-?	0.9332	4E-6		0.0465	[0.027-0.066] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
842	chr19	33759470	33759471	rs62126636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.11		rs62126636-T	0.314829	1E-19		0.021986226	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33759960	33759961	rs10401672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19q13.11	intergenic	rs10401672-T	0.3709	2E-42		0.0499181	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33759960	33759961	rs10401672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.11	intergenic	rs10401672-T	0.3708	1E-39		0.04822196	[0.041-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33762779	33762780	rs12976073	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19q13.11		rs12976073-?	NR	5E-8				Affymetrix [NR] (imputed)	N
842	chr19	33762779	33762780	rs12976073	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19q13.11		rs12976073-C	0.897	7E-9				Affymetrix [10369434] (imputed)	N
842	chr19	33764717	33764718	rs10420798	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs10420798-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33764861	33764862	rs10423902	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	19q13.11	SLC7A10, CEBPA	rs10423902-?	NR	5E-8		0.02371	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
842	chr19	33773103	33773104	rs35763270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.11		rs35763270-?	NR	3E-10				NR [~ 8900000] (imputed)	N
842	chr19	33777657	33777658	rs6510373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs6510373-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33777724	33777725	rs8111715	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs8111715-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33778782	33778783	rs12984021	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.11	CEBPA	rs12984021-A	0.894936	5E-8		0.0175912	[0.011-0.024] unit increase	Affymetrix [NR] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs1423056-G	0.6765	4E-9	(EA)	0.0256	[0.017-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs1423056-G	0.6765	4E-8	(EA, women)	0.0309	[0.02-0.042] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	CEBPA	rs1423056-G	0.6766	1E-6	(EA, women)	0.0311	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	CEBPA	rs1423056-G	0.6765	1E-8	(EA)	0.0278	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs1423056-?	0.6765	3E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33780443	33780444	rs1423056	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs1423056-?	0.6765	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
842	chr19	33784656	33784657	rs73024215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11		rs73024215-C	0.070864	7E-10		0.0361297	[0.028-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
842	chr19	33784656	33784657	rs73024215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.11	intergenic	rs73024215-C	0.0749	8E-10		0.04253082	[0.029-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
842	chr19	33785754	33785755	rs149769955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs149769955-T	NR	2E-15		0.044152	[0.033-0.055] unit decrease	Affymetrix [323858] (imputed)	N
842	chr19	33785754	33785755	rs149769955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs149769955-T	NR	9E-15		0.0429221	[0.032-0.054] unit decrease	Affymetrix [127266] (imputed)	N
842	chr19	33785832	33785833	rs559407214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs559407214-C	0.179303	5E-12		0.021790067	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33786207	33786208	rs56160221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs56160221-?	NR	5E-19				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33787953	33787954	rs113504807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs113504807-T	NR	5E-8		0.0374056	[0.024-0.051] unit increase	Affymetrix [319769] (imputed)	N
842	chr19	33787953	33787954	rs113504807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs113504807-T	NR	5E-8		0.0373124	[0.024-0.051] unit increase	Affymetrix [319769] (imputed)	N
842	chr19	33789396	33789397	rs874966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs874966-G	NR	3E-19		0.02834	[0.022-0.035] unit decrease	Affymetrix [323858] (imputed)	N
842	chr19	33789396	33789397	rs874966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs874966-G	NR	2E-19		0.0285133	[0.022-0.035] unit decrease	Affymetrix [127266] (imputed)	N
842	chr19	33789396	33789397	rs874966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs874966-G	NR	4E-8		0.0170885	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
842	chr19	33789396	33789397	rs874966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs874966-G	NR	2E-19		0.026088	[0.02-0.032] unit decrease	Affymetrix [321169] (imputed)	N
842	chr19	33789396	33789397	rs874966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs874966-G	NR	3E-9		0.0185953	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
842	chr19	33789396	33789397	rs874966	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.11	NR	rs874966-G	NR	7E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
842	chr19	33789396	33789397	rs874966	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs874966-?	NR	1E-46				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33789396	33789397	rs874966	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs874966-?	NR	7E-34				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33789900	33789901	rs73024222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs73024222-A	NR	5E-16		0.0347298	[0.026-0.043] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33789900	33789901	rs73024222	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs73024222-A	NR	5E-16		0.0348017	[0.026-0.043] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33790501	33790502	rs10403561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs10403561-G	NR	1E-19		0.026001	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33790501	33790502	rs10403561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs10403561-G	NR	8E-20		0.0262098	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33790501	33790502	rs10403561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs10403561-G	NR	1E-18		0.0255239	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
842	chr19	33790501	33790502	rs10403561	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs10403561-G	NR	1E-8		0.0185157	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	4E-10		0.0348882	[0.024-0.046] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	3E-12		0.0428624	[0.031-0.055] unit decrease	Affymetrix [323858] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	3E-10		0.0352713	[0.024-0.046] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	3E-13		0.0448019	[0.033-0.057] unit decrease	Affymetrix [127266] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	2E-9		0.0380031	[0.026-0.05] unit increase	Affymetrix [323858] (imputed)	N
842	chr19	33790555	33790556	rs41355649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.11, CEBPA	rs41355649-A	NR	1E-8		0.0321745	[0.021-0.043] unit decrease	Affymetrix [321169] (imputed)	N
842	chr19	33790555	33790556	rs41355649	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs41355649-?	NR	7E-21				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33790555	33790556	rs41355649	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs41355649-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33790555	33790556	rs41355649	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.11	CEBPA	rs41355649-G	0.93397	1E-10		0.034243	[0.024-0.045] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
842	chr19	33797257	33797258	rs56355036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs56355036-A	NR	3E-14		0.0379834	[0.028-0.048] unit decrease	Affymetrix [321114] (imputed)	N
842	chr19	33797257	33797258	rs56355036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs56355036-A	NR	1E-16		0.0414445	[0.032-0.051] unit decrease	Affymetrix [321169] (imputed)	N
842	chr19	33798468	33798469	rs57215491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs57215491-C	NR	1E-10		0.027225	[0.019-0.035] unit decrease	Affymetrix [321114] (imputed)	N
842	chr19	33798468	33798469	rs57215491	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs57215491-C	NR	9E-14		0.0314226	[0.023-0.04] unit decrease	Affymetrix [321169] (imputed)	N
842	chr19	33802541	33802542	rs7251505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.11	CTD-2540B15.9	rs7251505-A	0.091879	8E-12		0.026406169	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33802541	33802542	rs7251505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.11	CTD-2540B15.9	rs7251505-A	0.091877	2E-11		0.026069405	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33802541	33802542	rs7251505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.11	CTD-2540B15.9	rs7251505-A	0.091919	6E-12		0.027145455	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33802541	33802542	rs7251505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.11	CTD-2540B15.9	rs7251505-A	0.091924	9E-17		0.032093987	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33806138	33806139	rs17529595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs17529595-T	NR	3E-18		0.042552	[0.033-0.052] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33806138	33806139	rs17529595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs17529595-T	NR	1E-18		0.0430579	[0.033-0.053] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33806275	33806276	rs111859293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.9	rs111859293-G	NR	6E-14		0.0338332	[0.025-0.043] unit decrease	Affymetrix [323858] (imputed)	N
842	chr19	33806275	33806276	rs111859293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.9	rs111859293-G	NR	4E-13		0.0327263	[0.024-0.042] unit decrease	Affymetrix [127266] (imputed)	N
842	chr19	33807225	33807226	rs12461391	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	19q13.11	intergenic	rs12461391-T	NR	9E-6		0.209831	[0.12-0.3] unit increase	Illumina [7433384] (imputed)	N
842	chr19	33812240	33812241	rs62126643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs62126643-T	NR	6E-24		0.0412816	[0.033-0.049] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33812240	33812241	rs62126643	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs62126643-?	NR	5E-47				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33812656	33812657	rs62126644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs62126644-G	NR	4E-23		0.0404956	[0.032-0.049] unit decrease	Affymetrix [319769] (imputed)	N
842	chr19	33812656	33812657	rs62126644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	CTD-2540B15.9	rs62126644-G	NR	4E-9		0.02739	[0.018-0.036] unit increase	Affymetrix [323858] (imputed)	N
842	chr19	33815484	33815485	rs3848600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11		rs3848600-T	0.226087	5E-11		0.017838078	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
842	chr19	33815689	33815690	rs142183293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs142183293-A	NR	6E-9		0.0796906	[0.053-0.106] unit decrease	Affymetrix [321114] (imputed)	N
842	chr19	33815689	33815690	rs142183293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2540B15.9	rs142183293-A	NR	9E-9		0.0786492	[0.052-0.105] unit decrease	Affymetrix [321169] (imputed)	N
842	chr19	33815689	33815690	rs142183293	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs142183293-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33815689	33815690	rs142183293	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs142183293-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
842	chr19	33815689	33815690	rs142183293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.11		rs142183293-?	NR	2E-9				NR [~ 8900000] (imputed)	N
843	chr19	33820664	33820665	rs57971673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	RPS3AP50	rs57971673-C	NR	1E-9		0.0239586	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33820664	33820665	rs57971673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	RPS3AP50	rs57971673-C	NR	4E-9		0.0230745	[0.015-0.031] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33820664	33820665	rs57971673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	RPS3AP50	rs57971673-C	NR	3E-12		0.0248643	[0.018-0.032] unit decrease	Affymetrix [321114] (imputed)	N
843	chr19	33820664	33820665	rs57971673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	RPS3AP50	rs57971673-C	NR	1E-15		0.0285711	[0.022-0.036] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33824897	33824898	rs7247962	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.11		rs7247962-C	0.231898	7E-13		0.019241331	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33824945	33824946	rs4081724	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19q13.11	NR	rs4081724-A	0.1387	8E-56		0.0396	[0.035-0.044] unit decrease	NR [~ 27400000] (imputed)	N
843	chr19	33824945	33824946	rs4081724	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	CEBPA	rs4081724-A	0.1421	2E-6		0.0257	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8536	3E-7	(men)	0.0378	[0.023-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8529	5E-12		0.0347	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8522	1E-7	(EA, men)	0.0391	[0.025-0.054] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8512	7E-12	(EA)	0.0347	[0.025-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8504	5E-7	(women)	0.0334	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33824945	33824946	rs4081724	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	CEBPA	rs4081724-G	0.8488	9E-7	(EA, women)	0.0327	[0.02-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33828073	33828074	rs78889164	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	19q13.11	NR	rs78889164-?	NR	5E-6				Illumina [at least 7383741] (imputed)	N
843	chr19	33834095	33834096	rs73026242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	RPS3AP50	rs73026242-G	NR	1E-10		0.0357575	[0.025-0.047] unit decrease	Affymetrix [321114] (imputed)	N
843	chr19	33834095	33834096	rs73026242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.11	RPS3AP50	rs73026242-G	0.072014	2E-14		0.033580415	[0.025-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33840268	33840269	rs117284239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs117284239-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33841610	33841611	rs12610763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	19q13.11		rs12610763-A	0.228633	3E-8		0.0249987	[0.016-0.034] unit increase	Illumina [13474682] (imputed)	N
843	chr19	33849120	33849121	rs6510374	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	19q13.11		rs6510374-?	NR	3E-8		0.00505221	[0.0033-0.0068] unit increase	NR [NR]	N
843	chr19	33849120	33849121	rs6510374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11	AKR1B1P7	rs6510374-C	0.499068	5E-9		0.013511063	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
843	chr19	33849883	33849884	rs4805872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	AKR1B1P7	rs4805872-C	NR	8E-9		0.020194	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33849883	33849884	rs4805872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs4805872-C	NR	1E-8		0.0182651	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33850666	33850667	rs1423066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs1423066-C	NR	6E-9		0.017622	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33850840	33850841	rs10518275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	19q13.11		rs10518275-?	NR	2E-8				NR [~ 8900000] (imputed)	N
843	chr19	33852666	33852667	rs117451113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs117451113-A	NR	2E-11		0.0403139	[0.029-0.052] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33852666	33852667	rs117451113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	AKR1B1P7	rs117451113-A	NR	1E-10		0.0428209	[0.03-0.056] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33852666	33852667	rs117451113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs117451113-A	NR	6E-12		0.0412306	[0.029-0.053] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33852666	33852667	rs117451113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	AKR1B1P7	rs117451113-A	NR	2E-10		0.042238	[0.029-0.055] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33852666	33852667	rs117451113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs117451113-A	NR	8E-10		0.0372032	[0.025-0.049] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33853259	33853260	rs56187503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.11		rs56187503-T	NR	2E-19		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
843	chr19	33853259	33853260	rs56187503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs56187503-T	NR	4E-9		0.016772	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33853259	33853260	rs56187503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs56187503-T	NR	2E-9		0.0171377	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33853259	33853260	rs56187503	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	AKR1B1P7	rs56187503-T	NR	2E-8		0.0161848	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33873434	33873435	rs2772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CEBPG	rs2772-G	NR	2E-15		0.0272143	[0.02-0.034] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33873434	33873435	rs2772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CEBPG	rs2772-G	NR	3E-16		0.0280106	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33874757	33874758	rs8113802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	CEBPG	rs8113802-G	NR	4E-8		0.017364	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33874757	33874758	rs8113802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	CEBPG	rs8113802-G	NR	7E-9		0.0183348	[0.012-0.025] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33876393	33876394	rs4805877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs4805877-G	NR	8E-11		0.0187714	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33876393	33876394	rs4805877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs4805877-G	NR	7E-11		0.0188568	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33876393	33876394	rs4805877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs4805877-G	NR	8E-9		0.0168379	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
843	chr19	33876393	33876394	rs4805877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs4805877-G	NR	9E-12		0.0199267	[0.014-0.026] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33878071	33878071	rs16426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs16426-GTAAT	NR	8E-22		0.0359115	[0.029-0.043] unit decrease	Affymetrix [321114] (imputed)	N
843	chr19	33878071	33878071	rs16426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs16426-GTAAT	NR	2E-23		0.0374223	[0.03-0.045] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33880348	33880349	rs12610925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs12610925-G	NR	4E-8		0.0162739	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33880348	33880349	rs12610925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs12610925-G	NR	2E-8		0.0165999	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33880783	33880784	rs73030120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs73030120-G	NR	2E-16		0.0337015	[0.026-0.042] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33880783	33880784	rs73030120	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs73030120-G	NR	3E-15		0.0324683	[0.024-0.041] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33880783	33880784	rs73030120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs73030120-?	NR	1E-30				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33880783	33880784	rs73030120	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.11	NR	rs73030120-G	0.176527	3E-10		0.0258078	[0.018-0.034] unit decrease	NR [19129689] (imputed)	N
843	chr19	33882221	33882222	rs17569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs17569-A	NR	1E-17		0.0334111	[0.026-0.041] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33882221	33882222	rs17569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs17569-A	NR	1E-16		0.0324356	[0.025-0.04] unit increase	Affymetrix [321169] (imputed)	N
843	chr19	33882221	33882222	rs17569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs17569-?	NR	4E-22				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33882597	33882598	rs17530976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs17530976-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33882651	33882652	rs2241382	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs2241382-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33883039	33883040	rs10775578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.11	NR	rs10775578-T	NR	5E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix [9000000] (imputed)	N
843	chr19	33884103	33884104	rs118005033	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	19q13.11	CEBPG	rs118005033-?	NR	2E-8	(conditional)	0.08	NR % increase	Affymetrix [9390170] (imputed)	N
843	chr19	33884340	33884341	rs16968074	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	19q13.11	PEPD	rs16968074-A	0.686	9E-7		0.101	[0.046-0.156] unit increase	Illumina [6391392] (imputed)	N
843	chr19	33885317	33885318	rs56361048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.11	PEPD	rs56361048-C	0.1381	5E-12		0.02262734	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33885317	33885318	rs56361048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.11	PEPD	rs56361048-C	0.138107	2E-10		0.020782016	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33886340	33886341	rs13343443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs13343443-C	NR	5E-17		0.0321321	[0.025-0.04] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33886340	33886341	rs13343443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs13343443-C	NR	2E-17		0.0326109	[0.025-0.04] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33886353	33886354	rs7258031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs7258031-T	NR	5E-16		0.0241692	[0.018-0.03] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33886353	33886354	rs7258031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7258031-T	NR	1E-16		0.0247405	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33886353	33886354	rs7258031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7258031-T	NR	6E-20		0.0274629	[0.022-0.033] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33886353	33886354	rs7258031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs7258031-T	NR	4E-13		0.0245635	[0.018-0.031] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33886353	33886354	rs7258031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7258031-T	NR	3E-16		0.0245727	[0.019-0.03] unit increase	Affymetrix [321169] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs7258031-T	0.3396	3E-12	(EA)	0.0298	[0.021-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs7258031-T	0.3396	8E-11	(men)	0.0382	[0.027-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs7258031-T	0.3396	2E-9	(EA, men)	0.0375	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	PEPD	rs7258031-T	0.3413	2E-6	(men)	0.0336	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	CEBPA	rs7258031-T	0.3413	2E-6	(EA, men)	0.0336	[0.02-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	CEBPA	rs7258031-T	0.3396	1E-9	(EA)	0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs7258031-?	0.3396	5E-12	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs7258031-?	0.3396	5E-12				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs7258031-?	0.3396	3E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	CEBPA	rs7258031-?	0.3396	3E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	19q13.11	NR	rs7258031-T	0.339355889807184	3E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
843	chr19	33886353	33886354	rs7258031	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	19q13.11	NR	rs7258031-T	0.339355889807184	3E-14		0.026753515	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
843	chr19	33886712	33886713	rs8101286	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	19q13.11	PEPD	rs8101286-?	NR	2E-13		0.03057	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
843	chr19	33887159	33887160	rs7247349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.11		rs7247349-C	NR	1E-33		0.0249	[0.021-0.029] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
843	chr19	33887159	33887160	rs7247349	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19q13.11	PEPD	rs7247349-A	0.502896	3E-22		0.00379301	[0.003-0.0046] unit increase	Affymetrix [13995440] (imputed)	N
843	chr19	33887159	33887160	rs7247349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.11		rs7247349-?	NR	1E-8				NR [~ 8900000] (imputed)	N
843	chr19	33887274	33887275	rs7247486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs7247486-G	NR	4E-8		0.0159469	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33887274	33887275	rs7247486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7247486-G	NR	2E-8		0.0162239	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33887274	33887275	rs7247486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7247486-G	NR	2E-10		0.0185684	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33887404	33887405	rs7250869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19q13.11		rs7250869-C	NR	5E-14		0.0488	[0.036-0.062] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
843	chr19	33887404	33887405	rs7250869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.11		rs7250869-C	NR	1E-18		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
843	chr19	33887404	33887405	rs7250869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.11	NR	rs7250869-C	0.690021	3E-20		0.0114357	[0.0088-0.0141] unit increase	Affymetrix [16585854] (imputed)	N
843	chr19	33887404	33887405	rs7250869	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.11	NR	rs7250869-C	0.690021	6E-12		0.00996289	[0.007-0.013] unit increase	Affymetrix [16585866] (imputed)	N
843	chr19	33888999	33889000	rs889140	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	19q13.11	PEPD	rs889140-A	0.450	4E-12		0.08	[0.060-0.100] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
843	chr19	33889214	33889215	rs10418558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19q13.11		rs10418558-T	NR	2E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
843	chr19	33889592	33889593	rs7256564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q13.11		rs7256564-G	NR	6E-9		0.045	[0.03-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
843	chr19	33889592	33889593	rs7256564	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19q13.11	PEPD	rs7256564-A	0.31	5E-16		8.12	z-score increase	Affymetrix [4312306] (imputed)	N
843	chr19	33889592	33889593	rs7256564	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19q13.11	PEPD	rs7256564-?	NR	5E-16		0.023	[0.018-0.028] unit increase	Affymetrix [5701386] (imputed)	N
843	chr19	33889592	33889593	rs7256564	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	19q13.11	PEPD	rs7256564-A	0.3122	2E-9		0.1955	[0.13-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
843	chr19	33890003	33890004	rs2018910	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	19q13.11	PEPD	rs2018910-T	0.1797	7E-7		0.0066	[0.0041-0.0091] unit increase	Affymetrix [~ 7740000] (imputed)	N
843	chr19	33890169	33890170	rs77423258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs77423258-C	NR	1E-11		0.0287819	[0.02-0.037] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33890169	33890170	rs77423258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs77423258-C	NR	4E-12		0.0295996	[0.021-0.038] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33890837	33890838	rs10406327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs10406327-G	NR	1E-15		0.025719	[0.019-0.032] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33890837	33890838	rs10406327	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19q13.11	NR	rs10406327-G	0.4754	9E-16		0.037	[0.028-0.046] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
843	chr19	33890837	33890838	rs10406327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs10406327-?	NR	3E-45				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33890837	33890838	rs10406327	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	19q13.11	PEPD	rs10406327-C	0.53	3E-7		1.0416667	[1.03-1.06]	Illumina [12557761] (imputed)	N
843	chr19	33890837	33890838	rs10406327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.11		rs10406327-?	NR	1E-8				NR [~ 8900000] (imputed)	N
843	chr19	33890837	33890838	rs10406327	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.11	PEPD	rs10406327-C	0.5226	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
843	chr19	33891012	33891013	rs62102718	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.11		rs62102718-A	0.715132	1E-8		0.0247193	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
843	chr19	33891012	33891013	rs62102718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs62102718-T	NR	8E-9		0.0199897	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33891012	33891013	rs62102718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs62102718-T	NR	2E-9		0.0208291	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33891012	33891013	rs62102718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.11	PEPD	rs62102718-A	0.713588	3E-29		0.023726	[0.02-0.028] unit increase	Affymetrix [NR] (imputed)	N
843	chr19	33891012	33891013	rs62102718	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	19q13.11	NR	rs62102718-T	0.28437	2E-8		0.0431179	[0.028-0.058] unit increase	Affymetrix [17914406] (imputed)	N
843	chr19	33891194	33891195	rs10405598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs10405598-A	NR	3E-14		0.0268973	[0.02-0.034] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33891194	33891195	rs10405598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs10405598-A	NR	3E-14		0.0269529	[0.02-0.034] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33892408	33892409	rs889138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs889138-T	NR	2E-26		0.0334172	[0.027-0.04] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33892408	33892409	rs889138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs889138-T	NR	8E-27		0.0337473	[0.028-0.04] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33892408	33892409	rs889138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19q13.11	PEPD	rs889138-T	NR	1E-10		0.0199534	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33892408	33892409	rs889138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	19q13.11	PEPD	rs889138-T	NR	4E-10		0.0195094	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33892408	33892409	rs889138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11	PEPD	rs889138-T	0.449739	2E-9		0.013999579	[0.0095-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
843	chr19	33892408	33892409	rs889138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11	PEPD	rs889138-T	0.449842	2E-9		0.0204357	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
843	chr19	33892408	33892409	rs889138	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11	PEPD	rs889138-T	0.449833	2E-12		0.0155330375	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
843	chr19	33892408	33892409	rs889138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.11		rs889138-?	NR	1E-25				NR [~ 8900000] (imputed)	N
843	chr19	33892408	33892409	rs889138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.11		rs889138-?	NR	4E-23				NR [~ 8900000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.11		rs3786897-G	NR	7E-12		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	19q13.11	NR	rs3786897-G	0.42	5E-63		0.03	[0.026-0.034] unit increase	Affymetrix [2446094] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	19q13.11	NR	rs3786897-G	0.42	5E-8				Affymetrix [2446094] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	19q13.11	NR	rs3786897-A	0.5803	3E-58		0.0279	[0.025-0.031] unit decrease	NR [~ 27400000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19q13.11	NA	rs3786897-A	0.5805	1E-43		0.0237	[0.02-0.027] unit decrease	NR [~ 27400000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19q13.11	NR	rs3786897-A	0.5805	1E-43		0.0237	[0.02-0.027] unit decrease	NR [~ 27400000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	19q13.11	NR	rs3786897-A	0.5805	1E-43		0.0237	[0.02-0.027] unit decrease	NR [~ 27400000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19q13.11	PEPD	rs3786897-G	0.4026	5E-6		0.037	[0.021-0.053] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-G	0.4162	2E-13		0.0278	[0.02-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-G	0.4162	1E-6	(women)	0.0237	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	PEPD	rs3786897-G	0.41690000000000005	8E-6	(women)	0.0265	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	CEBPA	rs3786897-G	0.4162	4E-10		0.0288	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-G	0.42379999999999995	1E-9		0.022	[0.015-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-G	0.41559999999999997	1E-8	(EA)	0.0216	[0.014-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	PEPD	rs3786897-G	0.42379999999999995	3E-8		0.0231	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	PEPD	rs3786897-G	0.41559999999999997	7E-7	(EA)	0.0217	[0.013-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-?	0.42379999999999995	5E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	PEPD	rs3786897-?	0.41559999999999997	8E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	PEPD	rs3786897-A	0.5764	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	PEPD	rs3786897-A	0.5764	1E-7		0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
843	chr19	33893007	33893008	rs3786897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	PEPD	rs3786897-A	0.5825	4E-11	(EA)	0.0223	[0.016-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33893007	33893008	rs3786897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	PEPD	rs3786897-A	0.5825	3E-7	(EA, men)	0.0249	[0.015-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33893007	33893008	rs3786897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	PEPD	rs3786897-A	0.5825	3E-6	(EA, women)	0.0209	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33893007	33893008	rs3786897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	PEPD	rs3786897-A	0.5815	9E-9	(EA)	0.0199	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33893007	33893008	rs3786897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.11	PEPD	rs3786897-A	0.5815	2E-7	(EA,women)	0.0232	[0.015-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
843	chr19	33893007	33893008	rs3786897	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	19q13.11	PEPD	rs3786897-A	0.56	1E-8		1.1	[1.07-1.14]	Affymetrix, Illumina [2626356] (imputed)	N
843	chr19	33894042	33894043	rs3786898	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs3786898-?	NR	1E-53				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33894042	33894043	rs3786898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.11		rs3786898-?	NR	9E-60				NR [~ 8900000] (imputed)	N
843	chr19	33894845	33894846	rs10422861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.11		rs10422861-T	NR	4E-31		0.0249	[0.021-0.029] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
843	chr19	33894845	33894846	rs10422861	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	19q13.11	CEBPG	rs10422861-?	NR	2E-22		0.0877	NR % increase	Affymetrix [9390170] (imputed)	N
843	chr19	33894845	33894846	rs10422861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.11	PEPD	rs10422861-T	0.665392	9E-12		0.016042538	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
843	chr19	33894845	33894846	rs10422861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs10422861-T	0.626555	1E-15				Affymetrix, Illumina [24649327] (imputed)	N
843	chr19	33894845	33894846	rs10422861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs10422861-T	0.641169	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
843	chr19	33894845	33894846	rs10422861	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19q13.11	PEPD	rs10422861-C	0.536	2E-16		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
843	chr19	33894845	33894846	rs10422861	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.11	PEPD	rs10422861-C	0.334675	3E-20		0.0194396	[0.015-0.024] unit increase	Affymetrix [NR] (imputed)	N
843	chr19	33895724	33895724	rs34590608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q13.11		rs34590608-TA	NR	4E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
843	chr19	33896194	33896195	rs10403360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs10403360-A	NR	6E-23		0.0281184	[0.023-0.034] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33896194	33896195	rs10403360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10403360-A	NR	1E-23		0.0286242	[0.023-0.034] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33896194	33896195	rs10403360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10403360-A	NR	4E-33		0.0344684	[0.029-0.04] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33896194	33896195	rs10403360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs10403360-A	NR	5E-9		0.0181486	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
843	chr19	33896194	33896195	rs10403360	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10403360-A	NR	1E-27		0.0313425	[0.026-0.037] unit increase	Affymetrix [321169] (imputed)	N
843	chr19	33896431	33896432	rs4805881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19q13.11		rs4805881-C	NR	5E-15		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
843	chr19	33896431	33896432	rs4805881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.11		rs4805881-C	NR	6E-21		0.0202	[0.016-0.024] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
843	chr19	33896431	33896432	rs4805881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19q13.11		rs4805881-C	NR	5E-19		0.0173	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.11	PEPD	rs4805881-C	0.665222	8E-13		0.016724639	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.11	PEPD	rs4805881-C	0.665232	4E-9		0.013764772	[0.0092-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.11	NR	rs4805881-C	0.665284	1E-16		0.01642	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.11	NR	rs4805881-C	0.665289	3E-12		0.014435	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q13.11	NR	rs4805881-C	0.6207	8E-22		0.0379	[0.03-0.046] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	19q13.11		rs4805881-C	0.47688208	1E-9		0.9511641	[0.93591891-0.966657645]	Illumina [8919992] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.11	NR	rs4805881-C	0.665647	4E-29		0.0090566	[0.0073-0.0108] unit increase	Affymetrix [16582909] (imputed)	N
843	chr19	33896431	33896432	rs4805881	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.11	NR	rs4805881-C	0.665647	7E-17		0.00777478	[0.0058-0.0097] unit increase	Affymetrix [16582965] (imputed)	N
843	chr19	33896431	33896432	rs4805881	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19q13.11	NR	rs4805881-?	NR	4E-7		0.0553	[0.034-0.077] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
843	chr19	33896431	33896432	rs4805881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.11		rs4805881-?	NR	3E-12				NR [~ 8900000] (imputed)	N
843	chr19	33896431	33896432	rs4805881	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.11	NR	rs4805881-A	NR	8E-10		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
843	chr19	33896431	33896432	rs4805881	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.11	NR	rs4805881-A	0.341	1E-10	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
843	chr19	33897933	33897934	rs10425465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs10425465-G	NR	5E-17		0.0276201	[0.021-0.034] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33897933	33897934	rs10425465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10425465-G	NR	9E-18		0.0282933	[0.022-0.035] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33897933	33897934	rs10425465	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19q13.11	PEPD, CEBPG	rs10425465-T	NR	3E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
843	chr19	33899064	33899065	rs731839	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	19q13.11	PEPD	rs731839-A	0.664	4E-11		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
843	chr19	33899064	33899065	rs731839	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	19q13.11	PEPD	rs731839-A	0.667	9E-13				Affymetrix, Illumina [2331072] (imputed)	N
843	chr19	33899064	33899065	rs731839	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	19q13.11	PEPD	rs731839-A	0.667	5E-12				Affymetrix, Illumina [2331072] (imputed)	N
843	chr19	33899064	33899065	rs731839	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	19q13.11	PEPD	rs731839-A	0.645264	2E-8		0.014221	[0.0093-0.0192] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
843	chr19	33899064	33899065	rs731839	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.11		rs731839-A	0.6654	5E-10		0.14023277	[0.094-0.186] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
843	chr19	33899064	33899065	rs731839	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.11		rs731839-A	0.6655	7E-12		0.11285824	[0.08-0.145] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
843	chr19	33899064	33899065	rs731839	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	19q13.11		rs731839-A	0.66	4E-6		0.073	[0.034-0.112] unit increase	Illumina [16607452] (imputed)	N
843	chr19	33899064	33899065	rs731839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.11	PEPD	rs731839-A	0.665509	1E-12		0.016571164	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
843	chr19	33899064	33899065	rs731839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.11	NR	rs731839-G	NR	2E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
843	chr19	33899064	33899065	rs731839	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.11	NR	rs731839-G	0.344	3E-10	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
843	chr19	33899064	33899065	rs731839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	19q13.11	PEPD	rs731839-A	0.658	3E-9	(Trans-ethnic initial)	0.0224	[0.015-0.029] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
843	chr19	33899064	33899065	rs731839	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19q13.11	PEPD	rs731839-A	0.658	4E-8	(Trans-ethnic initial)	0.022	[0.015-0.029] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
843	chr19	33899064	33899065	rs731839	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.11	PEPD	rs731839-G	0.35	3E-9		0.022	[NR] mg/dL increase	NR [NR] (imputed)	N
843	chr19	33899064	33899065	rs731839	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.11	PEPD	rs731839-G	0.35	3E-9		0.022	[NR] unit decrease	NR [NR] (imputed)	N
843	chr19	33899064	33899065	rs731839	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	19q13.11	PEPD	rs731839-G	0.35	8E-12		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33900256	33900257	rs8103728	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19q13.11	PEPD	rs8103728-?	NR	8E-18		0.0027	[0.0021-0.0033] unit increase	Affymetrix [21347608] (imputed)	N
843	chr19	33900256	33900257	rs8103728	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19q13.11	PEPD	rs8103728-?	NR	7E-21		0.0049	[0.0039-0.0059] unit increase	Affymetrix [21347608] (imputed)	N
843	chr19	33900256	33900257	rs8103728	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.11	PEPD	rs8103728-C	0.330405	7E-28		0.0228755	[0.019-0.027] unit decrease	Affymetrix [NR] (imputed)	N
843	chr19	33906122	33906123	rs4805885	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	19q13.11	PEPD	rs4805885-C	0.603328816474692	1E-22		0.05810452	unit increase	Illumina [265780]	N
843	chr19	33906122	33906123	rs4805885	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	19q13.11	PEPD	rs4805885-T	0.39	2E-8		0.03	[0.020-0.040] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33909709	33909710	rs8182584	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	19q13.11		rs8182584-T	0.3851	5E-9		0.12680458	[0.083-0.171] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
843	chr19	33909709	33909710	rs8182584	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	19q13.11	PEPD	rs8182584-T	0.3819	9E-8		9.597E-4	[-0.00008-0.002] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
843	chr19	33910148	33910149	rs77346928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs77346928-A	NR	3E-11		0.0385233	[0.027-0.05] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33910148	33910149	rs77346928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs77346928-A	NR	4E-10		0.0324639	[0.022-0.043] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33910148	33910149	rs77346928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs77346928-A	NR	2E-11		0.0388316	[0.027-0.05] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33910830	33910831	rs61627965	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs61627965-?	NR	8E-28				Affymetrix [~ 8270000] (imputed)	N
843	chr19	33911704	33911705	rs57457691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	19q13.11		rs57457691-C	0.476073	2E-8		0.0179707	[0.012-0.024] unit increase	Illumina [13479178] (imputed)	N
843	chr19	33911704	33911705	rs57457691	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.11	PEPD	rs57457691-T	0.37	2E-16		8.23	z-score increase	Affymetrix [4314223] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.11	PEPD	rs57457691-C	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.11	PEPD	rs57457691-C	NR	6E-8				Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.11	PEPD	rs57457691-C	NR	9E-6		0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.11	PEPD	rs57457691-C	NR	5E-11				Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.11	PEPD	rs57457691-C	NR	5E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.11	PEPD	rs57457691-C	NR	3E-13				Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.11	PEPD	rs57457691-C	NR	2E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.11	PEPD	rs57457691-C	NR	2E-6	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33911704	33911705	rs57457691	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.11	PEPD	rs57457691-C	NR	2E-6		0.004	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr19	33912684	33912685	rs4534971	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs4534971-T	NR	4E-11		0.0201666	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33912684	33912685	rs4534971	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs4534971-T	NR	1E-11		0.0207079	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
843	chr19	33913695	33913695	rs755941279	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs755941279-C	NR	3E-11		0.025557	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33913695	33913695	rs755941279	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs755941279-C	NR	7E-11		0.0250445	[0.018-0.033] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33913744	33913745	rs67527887	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.11	NR	rs67527887-T	0.513011	2E-14		0.00854278	[0.0061-0.011] unit increase	Affymetrix [16582621] (imputed)	N
843	chr19	33913744	33913745	rs67527887	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.11	NR	rs67527887-T	0.513011	5E-9		0.0069807	[0.0044-0.0096] unit increase	Affymetrix [16582614] (imputed)	N
843	chr19	33915520	33915521	rs73588216	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.11	PEPD	rs73588216-?		8E-6				Illumina [4322238] (imputed)	N
843	chr19	33916203	33916203	rs113458763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19q13.11	PEPD	rs113458763-AAAAC	NR	2E-8		0.0194087	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33916203	33916203	rs113458763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs113458763-AAAAC	NR	3E-10		0.0225143	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33916331	33916332	rs56064330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs56064330-A	NR	1E-17		0.0297782	[0.023-0.037] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33916331	33916332	rs56064330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs56064330-A	NR	3E-18		0.0303661	[0.024-0.037] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33916331	33916332	rs56064330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs56064330-A	NR	3E-12		0.0220633	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33916331	33916332	rs56064330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs56064330-A	NR	2E-9		0.018969	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
843	chr19	33918422	33918423	rs11667352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs11667352-G	NR	3E-18		0.0278935	[0.022-0.034] unit increase	Affymetrix [323858] (imputed)	N
843	chr19	33918422	33918423	rs11667352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs11667352-G	NR	2E-18		0.0279589	[0.022-0.034] unit increase	Affymetrix [127266] (imputed)	N
843	chr19	33918422	33918423	rs11667352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19q13.11	PEPD	rs11667352-G	NR	2E-8		0.0177438	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
843	chr19	33918422	33918423	rs11667352	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs11667352-G	NR	8E-10		0.02015	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33924547	33924548	rs12975240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs12975240-G	NR	1E-13		0.022927	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33926012	33926013	rs10402712	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	19q13.11	PEPD	rs10402712-A	0.27	2E-8		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
843	chr19	33926999	33927000	rs11084735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs11084735-G	NR	3E-13		0.0221328	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33926999	33927000	rs11084735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs11084735-G	NR	7E-14		0.0226772	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33926999	33927000	rs11084735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs11084735-G	NR	4E-11		0.0200982	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
843	chr19	33929628	33929629	rs73035067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs73035067-T	NR	7E-12		0.0423519	[0.03-0.054] unit decrease	Affymetrix [323858] (imputed)	N
843	chr19	33929628	33929629	rs73035067	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs73035067-T	NR	8E-13		0.0442669	[0.032-0.056] unit decrease	Affymetrix [127266] (imputed)	N
843	chr19	33930343	33930344	rs73035072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs73035072-T	NR	3E-10		0.038819	[0.027-0.051] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33930343	33930344	rs73035072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs73035072-T	NR	2E-10		0.0391223	[0.027-0.051] unit decrease	Affymetrix [319769] (imputed)	N
843	chr19	33930343	33930344	rs73035072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs73035072-T	NR	1E-8		0.0354021	[0.023-0.048] unit decrease	Affymetrix [321169] (imputed)	N
843	chr19	33933452	33933453	rs12460070	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.11	PEPD	rs12460070-A	0.6562	2E-10		0.0184	[0.013-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
843	chr19	33934839	33934840	rs116126028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs116126028-T	NR	2E-8		0.0385137	[0.025-0.052] unit decrease	Affymetrix [321016] (imputed)	N
843	chr19	33935101	33935102	rs2287821	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.11	PEPD	rs2287821-T	0.5091	7E-16		0.0153	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	3E-6		0.009	mmol/L decrease	NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	3E-12		0.012	nmol/L increase	NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	2E-50				NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	2E-14		0.014	mmol/L increase	NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	2E-26		0.016	% increase	NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	2E-10		0.013	U/L decrease	NR [NR] (imputed)	N
843	chr19	33938799	33938800	rs7258937	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	19q13.11		rs7258937-T	0.51	8E-6		0.009	U/L decrease	NR [NR] (imputed)	N
843	chr19	33940662	33940669	rs34940240	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.11	PEPD	rs34940240-?	0.5407	4E-13		0.0194	[0.014-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
844	chr19	33949549	33949550	rs61699726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs61699726-T	NR	5E-9		0.0176393	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
844	chr19	33952980	33952981	rs76748772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs76748772-T	NR	1E-10		0.044426	[0.031-0.058] unit decrease	Affymetrix [323858] (imputed)	N
844	chr19	33952980	33952981	rs76748772	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs76748772-T	NR	2E-10		0.0439292	[0.03-0.057] unit decrease	Affymetrix [127266] (imputed)	N
844	chr19	33953353	33953354	rs7247614	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q13.11	NA	rs7247614-T	0.6938	2E-10		0.0119	[0.0082-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
844	chr19	33964180	33964181	rs11880064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.11		rs11880064-?	NR	9E-10				NR [~ 8900000] (imputed)	N
844	chr19	33965815	33965816	rs12710011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.11	NR	rs12710011-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
844	chr19	33966640	33966641	rs10402145	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.11	NA	rs10402145-A	0.3041	2E-10		0.012	[0.0083-0.0157] unit increase	NR [~ 27400000] (imputed)	N
844	chr19	33968015	33968016	rs79449543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs79449543-T	NR	7E-10		0.0321241	[0.022-0.042] unit increase	Affymetrix [319769] (imputed)	N
844	chr19	33968417	33968418	rs7255303	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs7255303-?	NR	4E-19				Affymetrix [~ 8270000] (imputed)	N
844	chr19	33969520	33969521	rs7248219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs7248219-A	NR	1E-8		0.0168461	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
844	chr19	33971745	33971746	rs60497719	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.11	PEPD	rs60497719-G	0.70965	1E-9		0.00966895	[0.0066-0.0128] unit decrease	Affymetrix [12370749]	N
844	chr19	33973912	33973913	rs10420551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs10420551-A	NR	9E-11		0.0199644	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33977395	33977396	rs10425678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs10425678-C	NR	5E-8		0.0154886	[0.0099-0.0211] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33977395	33977396	rs10425678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10425678-C	NR	2E-8		0.0160096	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33978722	33978723	rs59339349	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs59339349-G	NR	2E-11		0.0207004	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33986749	33986750	rs10445599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs10445599-T	NR	3E-20		0.0335441	[0.026-0.041] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33986749	33986750	rs10445599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10445599-T	NR	4E-21		0.0344301	[0.027-0.042] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	33986749	33986750	rs10445599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10445599-T	NR	2E-20		0.0340261	[0.027-0.041] unit decrease	Affymetrix [321114] (imputed)	N
844	chr19	33986749	33986750	rs10445599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs10445599-T	NR	6E-22		0.0354255	[0.028-0.043] unit decrease	Affymetrix [321169] (imputed)	N
844	chr19	33996405	33996406	rs11665716	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.11	NR	rs11665716-A	0.197	2E-8		0.00789552	[0.0051-0.0107] unit increase	NR [9732723] (imputed)	N
844	chr19	34000724	34000725	rs33823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.11	NR	rs33823-?	NR	3E-10		0.14041	[0.097-0.184] unit decrease	Affymetrix [7794483] (imputed)	N
844	chr19	34000724	34000725	rs33823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.11	NR	rs33823-?	NR	2E-7	(male)	0.14172	[0.088-0.195] unit decrease	Affymetrix [7794483] (imputed)	N
844	chr19	34003254	34003255	rs153701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs153701-T	NR	8E-11		0.0185884	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
844	chr19	34003254	34003255	rs153701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs153701-T	NR	5E-11		0.018832	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
844	chr19	34003254	34003255	rs153701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs153701-T	NR	5E-16		0.0234319	[0.018-0.029] unit increase	Affymetrix [321114] (imputed)	N
844	chr19	34003254	34003255	rs153701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs153701-T	NR	2E-13		0.021236	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs62100698-T	NR	1E-18		0.0396026	[0.031-0.048] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	19q13.11	PEPD	rs62100698-T	NR	2E-10		0.0318082	[0.022-0.042] unit decrease	Affymetrix [323858] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs62100698-T	NR	4E-19		0.0401895	[0.031-0.049] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	19q13.11	PEPD	rs62100698-T	NR	3E-10		0.0312131	[0.021-0.041] unit decrease	Affymetrix [127266] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	PEPD	rs62100698-T	NR	4E-15		0.0355351	[0.027-0.044] unit decrease	Affymetrix [321114] (imputed)	N
844	chr19	34006476	34006477	rs62100698	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	PEPD	rs62100698-T	NR	4E-17		0.0381752	[0.029-0.047] unit decrease	Affymetrix [321169] (imputed)	N
844	chr19	34011333	34011334	rs33842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q13.11		rs33842-G	NR	6E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
844	chr19	34011333	34011334	rs33842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.11		rs33842-?	NR	1E-9				NR [~ 8900000] (imputed)	N
844	chr19	34015205	34015206	rs33846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	PEPD	rs33846-A	NR	3E-9		0.0202967	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
844	chr19	34015205	34015206	rs33846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	PEPD	rs33846-A	NR	2E-9		0.0205411	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
844	chr19	34025360	34025361	rs12373536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs12373536-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
844	chr19	34028390	34028391	rs4805903	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	19q13.11	NR	rs4805903-A	0.31	8E-6		0.160337	[0.09-0.23] unit decrease	Illumina [~ 6600000] (imputed)	N
844	chr19	34032862	34032863	rs73023513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.11	CTD-2329C7.2	rs73023513-C	NR	3E-11		0.0339613	[0.024-0.044] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	34032862	34032863	rs73023513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.11	CTD-2329C7.2	rs73023513-C	NR	2E-11		0.0343471	[0.024-0.044] unit decrease	Affymetrix [319769] (imputed)	N
844	chr19	34032862	34032863	rs73023513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.11	CTD-2329C7.2	rs73023513-C	NR	1E-9		0.0311901	[0.021-0.041] unit decrease	Affymetrix [321114] (imputed)	N
844	chr19	34032862	34032863	rs73023513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.11	CTD-2329C7.2	rs73023513-C	NR	3E-10		0.0324249	[0.022-0.043] unit decrease	Affymetrix [321169] (imputed)	N
844	chr19	34039206	34039207	rs73023520	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs73023520-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
844	chr19	34045674	34045675	rs1864132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.11	NR	rs1864132-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
844	chr19	34045674	34045675	rs1864132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.11	NR	rs1864132-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
845	chr19	34118173	34118173	rs542383728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.11	NR	rs542383728-AT	NR	2E-9		0.0178	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
845	chr19	34130335	34130336	rs2059876	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19q13.11	CHST8	rs2059876-?	NR	4E-7	(Shared)			Affymetrix, Illumina [~ 5200000]	N
845	chr19	34145360	34145361	rs6510392	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.11	NR	rs6510392-T	0.216	2E-8	(RPA3)	0.0016	NR unit increase	Illumina [1671387] (imputed)	N
845	chr19	34163297	34163298	rs2012033	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	19q13.11	CHST8, KCTD15	rs2012033-?		1E-6		5.763	[3.54-7.99] unit increase	Illumina [~ 4900000] (imputed)	N
845	chr19	34163297	34163298	rs2012033	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	19q13.11	CHST8, KCTD15	rs2012033-?		8E-7		2.248	[1.42-3.08] unit increase	Illumina [~ 4900000] (imputed)	N
845	chr19	34168272	34168273	rs4805924	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	19q13.11	CHST8	rs4805924-?	0.02	6E-7	(olanzapine)			Affymetrix [492900]	N
845	chr19	34185835	34185860	rs150236599	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	19q13.11	CHST8	rs150236599-CCCCTCCCCTCCCTTCCCCTTCTGTT	0.858826	2E-6		0.320222	[0.19-0.45] unit decrease	Illumina [6952813] (imputed)	N
845	chr19	34186354	34186355	rs73033157	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	19q13.11	CHST8	rs73033157-T	NR	4E-6		4.638	z score decrease	Illumina [5300000] (imputed)	N
846	chr19	34233582	34233583	rs537549660	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	19q13.11	CHST8	rs537549660-A	0.0025	5E-6		0.7253	[0.41-1.04] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
846	chr19	34233582	34233583	rs537549660	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	19q13.11	CHST8	rs537549660-A	0.0026	6E-6		0.7135	[0.41-1.02] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
846	chr19	34246053	34246054	rs141219442	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	19q13.11		rs141219442-T	NR	4E-9		0.458	[0.31-0.61] unit decrease	Affymetrix [509886] (imputed)	N
846	chr19	34271078	34271079	rs285685	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.11	NR	rs285685-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
846	chr19	34275247	34275248	rs285682	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19q13.11	Intergenic	rs285682-?		5E-6		1.35	[1.19-1.53]	Illumina [7645193] (imputed)	N
846	chr19	34281695	34281696	rs961499	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19q13.11	NR	rs961499-T	0.286	7E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
846	chr19	34285367	34285368	rs28637706	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	19q13.11	NR	rs28637706-G		1E-9		0.1589	[0.11-0.21] SD units increase	NR [10700000] (imputed)	N
846	chr19	34287385	34287386	rs28524164	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.11		rs28524164-C	0.47	2E-11		6.7	z score increase	Affymetrix [9061022] (imputed)	N
846	chr19	34290994	34290995	rs287104	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	3,566 European ancestry individuals	4,680 European ancestry individuals	19q13.11		rs287104-G	0.347868761	4E-37				Illumina [7417619] (imputed)	N
846	chr19	34294900	34294901	rs4805059	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	19q13.11	NR	rs4805059-?	NR	9E-9	(Quadrant II (Nose), Segment 47)	0.030676998	NR unit decrease	NR [7417619] (imputed)	N
846	chr19	34306815	34306816	rs185350	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs185350-T	0.5085	4E-10	(EA)	0.0243	[0.017-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34308209	34308210	rs29943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	KCTD15	rs29943-C	0.6718	1E-8		0.0243	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34308209	34308210	rs29943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs29943-C	0.6718	7E-10		0.0232	[0.016-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34308209	34308210	rs29943	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs29943-C	0.6718	3E-6	(women)	0.0228	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34309531	34309532	rs29941	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q13.11	NR	rs29941-A	NR	3E-9		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
846	chr19	34309531	34309532	rs29941	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	19q13.11	KCTD15, LSM14A	rs29941-G	0.68	2E-10		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
846	chr19	34309531	34309532	rs29941	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	KCTD15	rs29941-A	0.3247	9E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
846	chr19	34309531	34309532	rs29941	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	KCTD15	rs29941-A	0.3247	2E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
846	chr19	34309531	34309532	rs29941	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19q13.11	KCTD15	rs29941-A	0.3247	8E-7		0.0201	[0.012-0.028] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
846	chr19	34309531	34309532	rs29941	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.11	KCTD15	rs29941-A	0.3247	1E-8		0.0202	[0.013-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
846	chr19	34309531	34309532	rs29941	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.11	KCTD15	rs29941-G	0.67	2E-8		0.018	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
846	chr19	34309531	34309532	rs29941	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.11	KCTD15	rs29941-G	0.669	8E-6	(EA, women)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
846	chr19	34309531	34309532	rs29941	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.11	KCTD15	rs29941-G	0.669	2E-8	(EA)	0.018	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
846	chr19	34309531	34309532	rs29941	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.11	KCTD15	rs29941-G	0.67	3E-9		0.06	[0.02-0.10] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
846	chr19	34309531	34309532	rs29941	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	19q13.11	KCTD15, CHST8	rs29941-C	0.69	5E-9		3.73	[2.48-4.98] percentage SD increase	Illumina [305846]	N
846	chr19	34309531	34309532	rs29941	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	19q13.11	KCTD15, CHST8	rs29941-C	0.69	7E-12		4.18	[2.98-5.38] % SD increase	Illumina [305846]	N
846	chr19	34310033	34310034	rs29940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.11		rs29940-A	NR	2E-11		0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
846	chr19	34310033	34310034	rs29940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19q13.11		rs29940-A	NR	1E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
846	chr19	34310799	34310800	rs29939	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q13.11	NA	rs29939-A	0.3279	1E-18		0.016	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
846	chr19	34311480	34311481	rs29938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.11	NA	rs29938-T	0.3425	4E-20		0.0158	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
846	chr19	34311480	34311481	rs29938	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q13.11	NA	rs29938-T	0.3425	4E-20		0.0158	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
846	chr19	34311480	34311481	rs29938	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q13.11	NR	rs29938-T	0.340916157168463	4E-14		0.02165926	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
846	chr19	34316704	34316705	rs7256653	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.11	NR	rs7256653-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
846	chr19	34316704	34316705	rs7256653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.11		rs7256653-?	NR	6E-14				NR [~ 8900000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	KCTD15	rs2546057-C	0.4717	3E-6	(EA,women)	0.0252	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.11	KCTD15	rs2546057-C	0.4716	3E-8	(EA)	0.0234	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs2546057-?	NR	5E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs2546057-?	NR	3E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs2546057-?	NR	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.11	KCTD15	rs2546057-C	0.4716	5E-7	(EA, women)	0.0244	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
846	chr19	34320853	34320854	rs2546057	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	19q13.11	KCTD15	rs2546057-A	0.52	3E-7	(% improvement - 12 weeks)	1.183	[1.12-1.24]	Affymetrix, Illumina [1200000] (imputed)	N
846	chr19	34321257	34321258	rs398426	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	19q13.11	KCTD15, CHST8	rs398426-T	0.2588456	5E-6	(% improvement - SSRI treated - 12 weeks)	0.2513	[0.14-0.36] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
846	chr19	34322136	34322137	rs11084753	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	19q13.11	KCTD15	rs11084753-G	0.67	2E-8		0.06	[-0.01-0.13] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
846	chr19	34333913	34333914	rs166988	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.11	KCTD15	rs166988-G	0.386	1E-6	(Energy balance )	0.04	[NR] kcal/d increase	Illumina [899892]	N
846	chr19	34338786	34338787	rs1102156	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	19q13.11	KCTD15	rs1102156-?	NR	3E-6		1.4086	NR	Affymetrix, Illumina [7062950] (imputed)	N
846	chr19	34338786	34338787	rs1102156	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	19q13.11	KCTD15	rs1102156-?	NR	2E-6		1.4518	NR	Affymetrix, Illumina [7062950] (imputed)	N
847	chr19	34432229	34432230	rs4805962	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	19q13.11	KCTD15, LSM14A	rs4805962-T	0.8066	8E-9		5.773	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
847	chr19	34432229	34432230	rs4805962	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	19q13.11	NR	rs4805962-T	0.8276	6E-12		0.0884	[0.063-0.113] unit decrease	Illumina [~ 10600000] (imputed)	N
847	chr19	34436888	34436889	rs10404384	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	19q13.11	KCTD15, LSM14A	rs10404384-C	0.07	3E-6		1.73		Illumina [8974355] (imputed)	N
848	chr19	34497647	34497648	rs75234213	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.11	NR	rs75234213-?		4E-6				Illumina [4322238] (imputed)	N
849	chr19	34639485	34639486	rs682819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.11		rs682819-A	0.632882	1E-22		0.02244617	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr19	34640590	34640591	rs1260555	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	19q13.11	Intergenic	rs1260555-?		5E-6	(male)	0.245	[0.14-0.35] unit decrease	NR [~ 5500000] (imputed)	N
849	chr19	34653560	34653561	rs576579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.11	NR	rs576579-T	0.618118	2E-16		0.017007	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
849	chr19	34655784	34655785	rs75767043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.11	NR	rs75767043-A	0.043115	6E-13		0.03299	[0.024-0.042] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
849	chr19	34656405	34656406	rs587259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.11	NR	rs587259-T	0.366688	4E-16		0.016287	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
849	chr19	34656405	34656406	rs587259	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19q13.11	LSM14	rs587259-?	NR	4E-7	(subset analysis)			Illumina [130052]	N
849	chr19	34662096	34662097	rs542220004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.11	LSM14A	rs542220004-A	0.378474	6E-13		0.01640397	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.11	LSM14A	rs1260606-C	0.618627	2E-12		0.016219467	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.11	LSM14A	rs1260606-C	0.618624	6E-11		0.015035856	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs1260606-T	0.385176	5E-28				Affymetrix, Illumina [22063850] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.11	NR	rs1260606-T	0.381463	4E-29		0.021707	[0.018-0.026] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs1260606-C	0.5295	4E-14				Affymetrix, Illumina [21126107] (imputed)	N
849	chr19	34663850	34663851	rs1260606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs1260606-C	0.53233	1E-14				Affymetrix, Illumina [20825802] (imputed)	N
849	chr19	34663850	34663851	rs1260606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.11		rs1260606-?	NR	2E-25				NR [~ 8900000] (imputed)	N
849	chr19	34691698	34691699	rs596594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.11		rs596594-?	NR	2E-14				NR [~ 8900000] (imputed)	N
849	chr19	34700560	34700561	rs62102136	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.11	LSM14A	rs62102136-T	0.327467	1E-12		0.0168718	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
850	chr19	34758626	34758626	rs564062363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.11		rs564062363-AT	NR	3E-8		0.0358	[0.023-0.048] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
850	chr19	34766587	34766588	rs10407640	20215924	Liu X	2010-01-01	J Am Acad Child Adolesc Psychiatry	A genome-wide association study of amygdala activation in youths with and without bipolar disorder.	Functional MRI	36 European ancestry BD cases, 21 European ancestry controls, 1 African American BD case, 5 African American controls, 2 BD cases, 3 controls	NA	19q13.11	KIAA0355	rs10407640-?	NR	7E-6	(hostility, left amygdala)	31.0	[NR] % variance	Illumina [104043]	N
850	chr19	34768589	34768590	rs28541881	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	19q13.11	Intergenic	rs28541881-?		1E-6		1.604	[NR]	Affymetrix [492217] (imputed)	N
850	chr19	34781353	34781354	rs34308190	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.11	KIAA0355	rs34308190-T	0.93725	2E-12		0.0268582	[0.019-0.034] unit decrease	NR [13737936] (imputed)	N
850	chr19	34781353	34781354	rs34308190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.11		rs34308190-?	NR	7E-13				NR [~ 8900000] (imputed)	N
850	chr19	34798167	34798168	rs117444986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.11		rs117444986-?	NR	1E-8				NR [~ 8900000] (imputed)	N
850	chr19	34843123	34843124	rs150707400	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	19q13.11	KIAA0355	rs150707400-?	NR	5E-6		64.6	[8.20-508.8]	Illumina [654642] (imputed)	N
850	chr19	34844562	34844563	rs379862	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.11	KIAA0355	rs379862-T	0.6296	2E-8		0.1184	[0.077-0.16] mmHg decrease	Affymetrix [NR] (imputed)	N
850	chr19	34849139	34849140	rs11879162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs11879162-G	0.0448922	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
850	chr19	34852625	34852626	rs112903532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.11	GPI	rs112903532-T	0.035581	1E-9		0.0360925	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
851	chr19	34898378	34898379	rs10853935	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.11	GPI, PDCD2L	rs10853935-C	0.436308	4E-8	(12 ms)	0.029749	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
851	chr19	34917699	34917700	rs2965280	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	19q13.11	Intergenic	rs2965280-?		2E-6		1.606	[NR]	Affymetrix [492217] (imputed)	N
851	chr19	34985454	34985455	rs16969368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	SAE2	rs16969368-?	NR	7E-6	(TAG 58:12)	0.5265684	[0.3-0.76] unit decrease	Affymetrix [at least 2500000] (imputed)	N
851	chr19	34985454	34985455	rs16969368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	SAE2	rs16969368-?	NR	5E-6	(TAG 58:10)	0.5285057	[0.3-0.76] unit decrease	Affymetrix [at least 2500000] (imputed)	N
851	chr19	34985454	34985455	rs16969368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	SAE2	rs16969368-?	NR	3E-6	(TAG 60:12)	0.5479422	[0.32-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
851	chr19	34985454	34985455	rs16969368	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	SAE2	rs16969368-?	NR	3E-6	(TAG 58:11)	0.5476408	[0.32-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
852	chr19	35071780	35071781	rs56342621	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	19q13.11	NR	rs56342621-G	0.010000000000000009	7E-6		1.6393442	[1.33-2.04]	NR [at least 8807005] (imputed)	N
852	chr19	35086627	35086628	rs75296107	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SCGB2B2	rs75296107-?	NR	3E-10	(female)	1.57515	[NR] unit decrease	Affymetrix [NR] (imputed)	N
852	chr19	35091355	35091356	rs76262407	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	19q13.11	NR	rs76262407-?		2E-6	(EA)	3.56	[0.81-15.69]	Affymetrix, Illumina [up to 9343778] (imputed)	N
853	chr19	35147182	35147183	rs35917943	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	19q13.11	NR	rs35917943-C	NR	2E-7		0.77	[0.48-1.06] unit increase	NR [5896100] (imputed)	N
854	chr19	35271887	35271888	rs9304861	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	19q13.11	ZNF599	rs9304861-A	NR	4E-7	(between families)	5.082	unit decrease	Affymetrix [up to 15107142] (imputed)	N
854	chr19	35282180	35282181	rs11084786	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	19q13.11	ZNF599, LOC400685	rs11084786-G	0.43	9E-7	(Combined sex)	0.008	[0.0041-0.0119] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
854	chr19	35286881	35286882	rs111268786	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01801	rs111268786-?	NR	4E-10	(female)	1.60998	[NR] unit decrease	Affymetrix [NR] (imputed)	N
854	chr19	35302087	35302088	rs4805097	29970928	Zhu Z	2018-07-03	Eur J Hum Genet	Multi-level genomic analyses suggest new genetic variants involved in human memory.	Long-term memory (delayed word recall task)	1,522 Chinese ancestry individuals	1,862 Chinese ancestry individuals	19q13.11	ZNF599	rs4805097-?	NR	7E-6		0.16	[0.10-0.22] unit increase	Illumina [up to 38219282] (imputed)	N
854	chr19	35309321	35309322	rs34875023	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	19q13.11	NR	rs34875023-?	NR	3E-8				Illumina [7760689] (imputed)	N
855	chr19	35406059	35406060	rs62125664	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	19q13.11	ZNF599, ZNF30, ZNF792, GRAMD1A	rs62125664-A	0.02	6E-7		2.23	[1.39-3.07] unit increase	Illumina [8437147] (imputed)	N
855	chr19	35464726	35464727	rs2194067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.11	NR	rs2194067-T	0.416605	9E-11		0.014562247	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35472212	35472213	rs295769	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.11	NR	rs295769-?		8E-6				Illumina [4322238] (imputed)	N
855	chr19	35477040	35477041	rs1609909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.11	NR	rs1609909-G	0.478569	1E-11		0.015399616	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35477040	35477041	rs1609909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.11	NR	rs1609909-G	0.478561	6E-11		0.0147923445	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35477040	35477041	rs1609909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.11		rs1609909-G	0.478523	5E-16		0.01831252	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35477040	35477041	rs1609909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.11		rs1609909-G	0.478514	3E-16		0.018313367	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35477040	35477041	rs1609909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.11		rs1609909-G	0.478515	4E-16		0.018277211	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
855	chr19	35478372	35478373	rs786504	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19q13.11	intergenic	rs786504-G	0.5113	5E-12		0.02486359	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
855	chr19	35487932	35487933	rs67003112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.11	NR	rs67003112-G	0.301315	5E-13				Affymetrix, Illumina [24649327] (imputed)	N
855	chr19	35487932	35487933	rs67003112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.11	NR	rs67003112-G	0.314812	2E-14		0.015292	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
855	chr19	35490266	35490267	rs8105140	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.11	SCN1B	rs8105140-?	NR	6E-6	(TAG 54:4)	0.34457994	[0.2-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
855	chr19	35510303	35510304	rs73038384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs73038384-T	NR	4E-14		0.0548	[0.041-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
855	chr19	35510303	35510304	rs73038384	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.11	NR	rs73038384-T	NR	5E-9		0.0423	[0.028-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
855	chr19	35513236	35513237	rs66528626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs66528626-C	NR	4E-9		0.0213	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
856	chr19	35537705	35537706	rs41523449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.11		rs41523449-A	NR	3E-12		0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
856	chr19	35537705	35537706	rs41523449	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.11	NR	rs41523449-G	0.834713	9E-14		0.0211008	[0.016-0.027] unit increase	NR [NR]	N
856	chr19	35541247	35541248	rs10406943	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	19q13.11	HPN	rs10406943-?	NR	1E-11		0.05521	[0.039-0.071] unit increase novel	Illumina [6108953] (imputed)	N
856	chr19	35541331	35541332	rs398101189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	19q13.11		rs398101189-T	0.928772	4E-12		0.0513591	[0.037-0.066] unit increase	Illumina [13477433] (imputed)	N
856	chr19	35546307	35546307	rs55714647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19q13.11	NR	rs55714647-G	0.0665606	2E-11		0.0265542	[0.019-0.035] unit increase	Affymetrix [16583148] (imputed)	N
856	chr19	35549121	35549122	rs149131600	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	19q13.11	HPN	rs149131600-T	0.1614	3E-8		0.0501	[0.032-0.068] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
856	chr19	35550877	35550878	rs45512696	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	19q13.11		rs45512696-C	0.825654	3E-32		0.0641199	[0.053-0.075] unit decrease	NR [11722792] (imputed)	N
856	chr19	35550877	35550878	rs45512696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.11		rs45512696-T	NR	7E-136		0.0774	[0.071-0.083] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
856	chr19	35550877	35550878	rs45512696	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.11	NR	rs45512696-T	0.17474500000000004	2E-86		0.0205653	[0.018-0.023] unit increase	Affymetrix [16582909] (imputed)	N
856	chr19	35550877	35550878	rs45512696	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.11	NR	rs45512696-T	0.17444800000000005	1E-46		0.0206662	[0.018-0.024] unit increase	Affymetrix [16582621] (imputed)	N
856	chr19	35550877	35550878	rs45512696	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.11	NR	rs45512696-T	0.17474500000000004	2E-64		0.0200512	[0.018-0.022] unit increase	Affymetrix [16582965] (imputed)	N
856	chr19	35550877	35550878	rs45512696	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.11	NR	rs45512696-T	0.17444800000000005	1E-41		0.0205695	[0.017-0.024] unit increase	Affymetrix [16582614] (imputed)	N
856	chr19	35551427	35551428	rs58895965	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.11	HPN	rs58895965-C	0.826022	2E-24		0.0267542	[0.022-0.032] unit decrease	Affymetrix [NR] (imputed)	N
856	chr19	35551427	35551428	rs58895965	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19q13.11	HPN, LOC100128675	rs58895965-?	NR	5E-17		0.0289	[0.023-0.035] unit increase	Affymetrix [5701386] (imputed)	N
856	chr19	35553340	35553341	rs1688043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	19q13.11		rs1688043-T	0.929921	2E-25		0.0776039	[0.063-0.092] unit increase	Illumina [13474682] (imputed)	N
856	chr19	35553340	35553341	rs1688043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19q13.11	NR	rs1688043-C	0.0662626	2E-16		0.0406564	[0.031-0.051] unit increase	Affymetrix [16585745] (imputed)	N
856	chr19	35553340	35553341	rs1688043	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	19q13.11	HPN-AS1	rs1688043-?	NR	4E-20		0.07963	[0.063-0.097] unit increase	Illumina [6108953] (imputed)	N
856	chr19	35553340	35553341	rs1688043	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	19q13.11	HPN	rs1688043-T	NR	4E-8				NR [25015711] (imputed)	N
856	chr19	35553448	35553449	rs2445818	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19q13.11		rs2445818-A	0.0676327	4E-8		0.0445223	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
856	chr19	35554383	35554384	rs2452000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.11		rs2452000-?	NR	1E-12				NR [~ 8900000] (imputed)	N
856	chr19	35554478	35554479	rs28616221	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.11	HPN	rs28616221-A	0.1794	6E-14		0.0186	[0.014-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	7E-11		0.0296	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	3E-28		0.0526	[0.043-0.062] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	6E-38		0.0612	[0.052-0.071] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	1E-110		0.1062	[0.097-0.115] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	5E-53		0.0728	[0.063-0.082] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.11	NR	rs4806073-C	NR	3E-10		0.0286	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	19q13.11	HPN, SCN1B	rs4806073-C	0.93	4E-18		0.0272	[0.021-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
856	chr19	35555189	35555190	rs4806073	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	19q13.11	HPN, SCN1B	rs4806073-C	0.93	3E-15	(EA)	0.0257	[0.019-0.032] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
856	chr19	35556639	35556640	rs1688031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19q13.11		rs1688031-C	NR	2E-53		0.0496	[0.043-0.056] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
856	chr19	35556639	35556640	rs1688031	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	19q13.11	HPN	rs1688031-T	NR	6E-12		0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
856	chr19	35556639	35556640	rs1688031	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	19q13.11	LOC100128675	rs1688031-T	0.142	2E-11		0.019485	[0.014-0.025] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
856	chr19	35556658	35556659	rs1672991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q13.11		rs1672991-G	NR	2E-53		0.0666	[0.058-0.075] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
856	chr19	35556658	35556659	rs1672991	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.11	HPN	rs1672991-A	0.0665228	2E-10		0.00273548	[0.0018-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
856	chr19	35556658	35556659	rs1672991	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19q13.11	NR	rs1672991-G	0.9336	9E-52		0.006755	[0.0059-0.0076] unit increase	Affymetrix [NR] (imputed)	N
856	chr19	35556715	35556716	rs3835126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.11	HPN-AS1, HPN	rs3835126-G	0.859188	2E-9		0.019446447	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
856	chr19	35556728	35556729	rs1672992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.11	HPN-AS1, HPN	rs1672992-T	0.859913	4E-10		0.020301882	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
856	chr19	35559473	35559474	rs11671010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.11		rs11671010-C	NR	2E-18		0.0256	[0.02-0.031] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
856	chr19	35559473	35559474	rs11671010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.11	NR	rs11671010-C	NR	7E-17		0.0261	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35559473	35559474	rs11671010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.11	NR	rs11671010-C	NR	5E-34		0.0399	[0.033-0.046] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35559473	35559474	rs11671010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs11671010-C	NR	5E-50		0.0486	[0.042-0.055] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35559473	35559474	rs11671010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs11671010-C	NR	6E-137		0.0813	[0.075-0.088] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35559473	35559474	rs11671010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.11	NR	rs11671010-C	NR	2E-46		0.0467	[0.04-0.053] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35559473	35559474	rs11671010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.11	HPN-AS1	rs11671010-C	0.180265	3E-13		0.021312874	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr19	35559473	35559474	rs11671010	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	19q13.11	HPN, SCN1B	rs11671010-?	NR	2E-13	(EA)			Affymetrix, Illumina [~ 2500000] (imputed)	N
856	chr19	35559786	35559787	rs2018519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.11	NR	rs2018519-C	0.18124200000000001	3E-40		0.0203457	[0.017-0.023] unit increase	Affymetrix [16585854] (imputed)	N
856	chr19	35559786	35559787	rs2018519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.11	NR	rs2018519-C	0.18124200000000001	2E-28		0.0194746	[0.016-0.023] unit increase	Affymetrix [16585866] (imputed)	N
856	chr19	35559786	35559787	rs2018519	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.11	intergenic	rs2018519-T	0.8433	2E-12		0.0212	[0.015-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
856	chr19	35560967	35560968	rs73040387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs73040387-A	NR	4E-14		0.0361	[0.027-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
856	chr19	35560967	35560968	rs73040387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs73040387-A	NR	4E-19		0.0426	[0.033-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
856	chr19	35560967	35560968	rs73040387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.11	NR	rs73040387-A	NR	5E-9		0.0279	[0.018-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
856	chr19	35575163	35575164	rs7254457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs7254457-T	NR	2E-24		0.0262	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35575163	35575164	rs7254457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.11	NR	rs7254457-T	NR	3E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35587790	35587791	rs4806080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.11	NR	rs4806080-T	NR	5E-13		0.0185	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
856	chr19	35616347	35616348	rs201144421	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19q13.12	LGI4	rs201144421-T	0.255	3E-11		0.03588		Illumina [243345]	N
857	chr19	35660507	35660508	rs12110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs12110-G	0.195766	5E-42				Affymetrix, Illumina [17210439] (imputed)	N
857	chr19	35660507	35660508	rs12110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.12	NR	rs12110-G	0.200145	2E-44		0.033644	[0.029-0.038] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
857	chr19	35661786	35661787	rs7249921	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.12	FXYD5	rs7249921-T	0.4189	3E-10		0.02370172	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35662256	35662257	rs7249578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.12	FXYD5	rs7249578-A	0.4195	1E-14		0.02866287	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35662504	35662505	rs2014850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.12	FXYD5	rs2014850-A	0.713615	4E-26		0.026776096	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35662842	35662843	rs7258029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.12	FXYD5	rs7258029-C	0.776534	1E-46		0.03950502	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35665189	35665190	rs56318666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.12	FXYD5	rs56318666-C	0.417	1E-10		0.0149466125	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35665647	35665648	rs7248710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19q13.12	FXYD5	rs7248710-A	0.7182	2E-21		0.0385641	[0.031-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35674869	35674870	rs4806103	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19q13.12	intergenic	rs4806103-G	0.3234	7E-12		0.02649961	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35677209	35677210	rs10403118	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	19q13.12	NR	rs10403118-A	0.79	7E-8	(EA)	0.086	[0.055-0.117] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
857	chr19	35677209	35677210	rs10403118	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	19q13.12	NR	rs10403118-A	0.79	4E-8		0.073	[0.048-0.098] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
857	chr19	35692402	35692403	rs916694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.12	NR	rs916694-T	0.421567	6E-33		0.027388336	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35692402	35692403	rs916694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.12	NR	rs916694-T	0.421572	2E-29		0.025790898	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35692402	35692403	rs916694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.12		rs916694-T	0.42154	5E-41		0.030502187	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35693119	35693120	rs28659908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.12		rs28659908-C	0.405473	5E-32		0.027175192	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35693119	35693120	rs28659908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.12		rs28659908-C	0.405424	1E-43		0.03177024	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35693119	35693120	rs28659908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19q13.12	intergenic	rs28659908-C	0.4075	3E-14		0.02835117	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35693119	35693120	rs28659908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19q13.12	intergenic	rs28659908-C	0.4076	9E-17		0.03073143	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35693119	35693120	rs28659908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19q13.12	intergenic	rs28659908-C	0.4075	1E-20		0.03470682	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35693119	35693120	rs28659908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19q13.12	intergenic	rs28659908-C	0.4075	6E-19		0.03321929	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35695183	35695184	rs77504456	32998551	Docherty AR	2020-10-01	Am J Psychiatry	Genome-Wide Association Study of Suicide Death and Polygenic Prediction of Clinical Antecedents.	Suicide	3,413 European ancestry cases, 14,810 European ancestry controls	NA	19q13.12	NR	rs77504456-?	NR	2E-7		0.01957054	[0.012-0.027] unit increase	Illumina [7519308] (imputed)	N
857	chr19	35723822	35723823	rs10424110	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	19q13.12	HAMP, HPN-AS1, MIR5196	rs10424110-G	0.273	5E-6		1.66	[NR]	Illumina [2483385] (imputed)	N
857	chr19	35746798	35746799	rs2853336	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	19q13.12	LSR	rs2853336-A	0.30	6E-6	(male)	0.0591	[0.034-0.084] unit decrease	Illumina [6380737] (imputed)	N
857	chr19	35746798	35746799	rs2853336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.12	NR	rs2853336-A	0.542956	4E-11		0.012511	[0.0088-0.0162] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
857	chr19	35747662	35747663	rs2853333	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19q13.12	LSR	rs2853333-T	0.5432	5E-11		0.02351888	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35751678	35751679	rs2519961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs2519961-A	0.488036	7E-11				Affymetrix, Illumina [24332387] (imputed)	N
857	chr19	35751678	35751679	rs2519961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.12	NR	rs2519961-A	0.542662	3E-12		0.012932	[0.0093-0.0166] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
857	chr19	35751678	35751679	rs2519961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.12		rs2519961-?	NR	4E-9				NR [~ 8900000] (imputed)	N
857	chr19	35765040	35765041	rs2284147	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	19q13.12	USF2	rs2284147-A	0.485	2E-7	(Other centrally acting agents [M03BX])	2.01		Illumina [16500000] (imputed)	N
857	chr19	35767865	35767866	rs12973672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.12	USF2	rs12973672-C	0.2294	5E-9		0.02456644	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35767865	35767866	rs12973672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	19q13.12	USF2	rs12973672-C	0.2294	2E-12		0.0295745	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.12	USF2	rs10421599-A	0.224231	2E-18		0.023458906	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.12	USF2	rs10421599-A	0.224308	3E-15		0.0203384	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs10421599-G	0.777631	1E-24				Affymetrix, Illumina [22063850] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.12	NR	rs10421599-G	0.775134	5E-24		0.022866	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs10421599-A	0.192527	5E-21				Affymetrix, Illumina [24246363] (imputed)	N
857	chr19	35767932	35767933	rs10421599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.12	NR	rs10421599-A	0.224784	9E-23		0.021417	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
857	chr19	35768236	35768237	rs10424619	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.12	USF2	rs10424619-T	0.2167	4E-9		0.02542594	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
857	chr19	35770470	35770471	rs1052033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.12	NR	rs1052033-T	0.230209	5E-21		0.021503	[0.017-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
857	chr19	35770783	35770784	rs34805185	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.12		rs34805185-?	NR	3E-13				NR [~ 8900000] (imputed)	N
857	chr19	35770931	35770932	rs35478572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.12	HAMP	rs35478572-A	0.518315	1E-9		0.013388342	[0.0091-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35772470	35772471	rs10414846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.12	HAMP	rs10414846-T	0.230268	3E-17		0.022044605	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35772470	35772471	rs10414846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.12		rs10414846-?	NR	1E-19				NR [~ 8900000] (imputed)	N
857	chr19	35772470	35772471	rs10414846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.12		rs10414846-?	NR	2E-17				NR [~ 8900000] (imputed)	N
857	chr19	35775509	35775509	rs373214016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.12		rs373214016-GT	NR	2E-11		0.0191	[0.013-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
857	chr19	35775509	35775509	rs373214016	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.12	USF2	rs373214016-GT	NR	2E-8		0.0264132	[0.017-0.036] unit increase	Affymetrix [16832071] (imputed)	N
857	chr19	35775864	35775865	rs779021719	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	19q13.12		rs779021719-?	NR	1E-8		0.256395	[0.16-0.35] unit decrease	NR [9800000] (imputed)	N
857	chr19	35775901	35775902	rs104894696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.12	HAMP	rs104894696-A	0.00332100000000002	3E-9		0.112265	[0.077-0.147] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35775901	35775902	rs104894696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.12	HAMP	rs104894696-A	0.00332200000000005	9E-14		0.14248733	[0.11-0.18] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35776480	35776481	rs570714594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.12	HAMP	rs570714594-T	0.00132399999999999	2E-16		0.26417848	[0.2-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr19	35776480	35776481	rs570714594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.12	HAMP	rs570714594-T	0.00132900000000002	3E-10		0.20371	[0.14-0.27] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35776480	35776481	rs570714594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.12	HAMP	rs570714594-T	0.00132600000000005	2E-14		0.24403031	[0.18-0.31] unit increase	Affymetrix [93095623] (imputed)	N
857	chr19	35776480	35776481	rs570714594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.12	NR	rs570714594-C	0.998652	1E-12		0.212664	[0.15-0.27] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
857	chr19	35776480	35776481	rs570714594	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.12	HAMP	rs570714594-T	NR	4E-9		0.324916	[0.21-0.44] unit decrease	Affymetrix [16832071] (imputed)	N
858	chr19	35805471	35805474	rs201472877	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	19q13.12	NR	rs201472877-I	NR	6E-6		1.8979	NR	Illumina [at least 560000] (imputed)	N
858	chr19	35812095	35812096	rs531034894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.12	CD22	rs531034894-A	0.00364100000000001	7E-11		0.121956445	[0.085-0.159] unit decrease	Affymetrix [93095623] (imputed)	N
858	chr19	35851614	35851615	rs10407548	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	92,618 European ancestry women	NA	19q13.12		rs10407548-T	0.653	7E-9		0.0248	[0.016-0.033] unit decrease	Affymetrix [8817117] (imputed)	N
858	chr19	35887128	35887129	rs16970288	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	19q13.12	EEF1A1P7, LINC01531	rs16970288-?		6E-6		1.69	[1.35-2.13]	Illumina [341191]	N
858	chr19	35898898	35898899	rs16970294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.12	FFAR2	rs16970294-?	NR	4E-6	(leucine)	0.2907072	[0.17-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
859	chr19	35941878	35941879	rs416633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.12	FFAR2	rs416633-A	0.077252	9E-10		0.025411366	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
859	chr19	35941878	35941879	rs416633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.12	FFAR2	rs416633-A	0.077196	1E-13		0.030857874	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	35947660	35947661	rs2005682	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	19q13.12	FFAR2	rs2005682-T	0.305	6E-11		0.032	[0.042-0.022] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
859	chr19	35947660	35947661	rs2005682	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	19q13.12	FFAR2	rs2005682-T	0.305	2E-11		0.029	[0.037-0.02] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
859	chr19	35947660	35947661	rs2005682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.12	FFAR2	rs2005682-T	0.288854	9E-10		0.01497982	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	35947889	35947890	rs2871993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.12	intergenic	rs2871993-A	0.284	1E-9		0.02431159	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
859	chr19	35947889	35947890	rs2871993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.12	intergenic	rs2871993-A	0.284	9E-11		0.02590688	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
859	chr19	35949593	35949594	rs2158007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.12		rs2158007-C	NR	6E-10		0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
859	chr19	35949593	35949594	rs2158007	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs2158007-C	0.27425	5E-21				Affymetrix, Illumina [20825802] (imputed)	N
859	chr19	35950173	35950174	rs34536858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.12		rs34536858-G	NR	1E-14		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
859	chr19	35950173	35950174	rs34536858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.12		rs34536858-G	0.290694	5E-16		0.019846473	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
859	chr19	35950173	35950174	rs34536858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.12		rs34536858-G	0.29072	5E-13		0.0145286	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	35950173	35950174	rs34536858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.12		rs34536858-G	0.29074	4E-18		0.021030907	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	35950173	35950174	rs34536858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.12		rs34536858-?	NR	1E-12				NR [~ 8900000] (imputed)	N
859	chr19	35950173	35950174	rs34536858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.12		rs34536858-?	NR	2E-13				NR [~ 8900000] (imputed)	N
859	chr19	35950522	35950523	rs12975762	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs12975762-G	0.271369	3E-10				Affymetrix, Illumina [21126107] (imputed)	N
859	chr19	35950522	35950523	rs12975762	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.12	NR	rs12975762-G	0.291332	2E-15		0.01611	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
859	chr19	35950663	35950664	rs12973353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs12973353-A	0.260668	4E-16				Affymetrix, Illumina [24653286] (imputed)	N
859	chr19	35973288	35973289	rs6510489	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	19q13.12	intergenic	rs6510489-?	NR	8E-6	(NSM vs. Control)	1.92	[NR]	Affymetrix [703012]	N
859	chr19	35992037	35992038	rs2293698	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	19q13.12	DMKN	rs2293698-A	0.49	8E-6		0.15	[0.091-0.209] unit increase	Illumina [4381914] (imputed)	N
859	chr19	36001712	36001713	rs374423205	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	19q13.12	DMKN	rs374423205-T	0.0049	6E-7		0.6628	[0.4-0.92] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
859	chr19	36004170	36004171	rs12460932	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	19q13.12	DMKN	rs12460932-?	NR	6E-6		4.517	z-score increase	Illumina [1819374] (imputed)	N
859	chr19	36019521	36019522	rs4805129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.12	SBSN, GAPDHS	rs4805129-C	0.627322	4E-20		0.021377968	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	36019521	36019522	rs4805129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.12	SBSN, GAPDHS	rs4805129-C	0.627331	5E-20		0.021349989	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
859	chr19	36024924	36024925	rs4806173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	19q13.12	NR	rs4806173-G	0.23718	2E-10		0.027806	[0.019-0.036] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
859	chr19	36030506	36030507	rs2239943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19q13.12		rs2239943-C	0.763353	3E-9		0.023124	[0.015-0.031] unit decrease	Illumina [13478928] (imputed)	N
859	chr19	36030506	36030507	rs2239943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs2239943-C	0.653573	4E-38				Affymetrix, Illumina [24588908] (imputed)	N
859	chr19	36033225	36033226	rs148474705	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	19q13.12	GAPDHS	rs148474705-?	0.0000628	5E-7		53.85	[32.92-74.78] unit increase	Illumina [105487]	N
859	chr19	36033225	36033226	rs148474705	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Diastolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	19q13.12	GAPDHS	rs148474705-?	0.0000628	1E-8		40.24	[26.34-54.14] unit increase	Illumina [105487]	N
859	chr19	36038389	36038390	rs7599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19q13.12		rs7599-A	0.36855	3E-13		0.0295618	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
859	chr19	36038389	36038390	rs7599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.12		rs7599-A	0.36855	4E-21		0.0388013	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
859	chr19	36038389	36038390	rs7599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19q13.12		rs7599-A	0.36855	5E-8		0.021067	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
859	chr19	36038389	36038390	rs7599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.12		rs7599-A	0.36855	1E-14		0.0321291	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
859	chr19	36038389	36038390	rs7599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.12		rs7599-A	0.36855	1E-13		0.0310149	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
859	chr19	36038389	36038390	rs7599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.12		rs7599-G	NR	5E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
859	chr19	36038389	36038390	rs7599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.12		rs7599-G	NR	8E-12		0.06	[0.043-0.077] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
859	chr19	36038389	36038390	rs7599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19q13.12		rs7599-G	NR	4E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
859	chr19	36038389	36038390	rs7599	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19q13.12	TMEM147	rs7599-A	0.368351	2E-16		0.00331471	[0.0025-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
859	chr19	36038389	36038390	rs7599	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19q13.12	TMEM147	rs7599-A	0.37	6E-12		6.87	z-score increase	Affymetrix [4312306] (imputed)	N
859	chr19	36038389	36038390	rs7599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.12	NR	rs7599-G	NR	4E-18		0.0224	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
859	chr19	36038389	36038390	rs7599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.12	NR	rs7599-G	NR	1E-15		0.0206	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
859	chr19	36038389	36038390	rs7599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.12	NR	rs7599-G	NR	2E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
859	chr19	36038389	36038390	rs7599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.12	NR	rs7599-G	NR	1E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
859	chr19	36043096	36043097	rs2251250	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	19q13.12	ATP4A	rs2251250-?	NR	1E-8		0.02856	[0.019-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
859	chr19	36044523	36044524	rs2251124	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.12		rs2251124-A	NR	2E-25		0.0213	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
860	chr19	36045635	36045635	rs137974198	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs137974198-T,rs137974198-T	0.373613	1E-9		0.0261832	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
860	chr19	36045635	36045635	rs137974198	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs137974198-T,rs137974198-T	0.373613	1E-9		0.0261832	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
860	chr19	36045635	36045635	rs137974198	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs137974198-T,rs137974198-T	0.373613	9E-16		0.0329295	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
860	chr19	36045635	36045635	rs137974198	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs137974198-T,rs137974198-T	0.373613	9E-16		0.0329295	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
860	chr19	36045771	36045772	rs2733739	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.12		rs2733739-A	0.374821	3E-9		0.0252022	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
860	chr19	36045771	36045772	rs2733739	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.12	NR	rs2733739-G	0.626073	3E-31		0.022728	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
860	chr19	36046888	36046888	rs71297088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs71297088-C,rs71297088-C	0.3452	6E-12		0.0284821	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
860	chr19	36046888	36046888	rs71297088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.12		rs71297088-C,rs71297088-C	0.3452	6E-12		0.0284821	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
860	chr19	36046888	36046888	rs71297088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19q13.12		rs71297088-C,rs71297088-C	0.345207	5E-9		0.0234124	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
860	chr19	36046888	36046888	rs71297088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19q13.12		rs71297088-C,rs71297088-C	0.345207	5E-9		0.0234124	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
860	chr19	36079703	36079704	rs756783	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals			AC002115.5	rs756783-C	0.4396	4E-9		0.0481504	[0.032-0.064] unit increase	Affymetrix [8165723] (imputed)	N
860	chr19	36150290	36150291	rs76908122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.12		rs76908122-?	NR	6E-15				NR [~ 8900000] (imputed)	N
860	chr19	36160833	36160834	rs10401695	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	19q13.12	NR	rs10401695-?		6E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
860	chr19	36168913	36168914	rs2285421	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q13.12	NR	rs2285421-C	0.4839	5E-8				NR [9056863] (imputed)	N
861	chr19	36185102	36185103	rs55939240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19q13.12		rs55939240-?	NR	5E-13				NR [~ 8900000] (imputed)	N
861	chr19	36197913	36197914	rs614225	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.12		rs614225-G	0.49	1E-10		6.47	z score increase	Affymetrix [9061022] (imputed)	N
861	chr19	36204830	36204831	rs23595	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q13.12	ETV2, COX6B1, UPK1A, ZBTB32, KMT2B, IGFLR1, AD000671.6, U2AF1L4, PSENEN, AC002398.9, LIN37, HSPB6, C19orf55, ARHGAP33, PRODH2	rs23595-?		2E-15				NR [7428630] (imputed)	N
861	chr19	36204830	36204831	rs23595	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	19q13.12	NR	rs23595-?		1E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
861	chr19	36213071	36213072	rs28373672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.12	KMT2B	rs28373672-G	0.229621	7E-10		0.016165763	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
861	chr19	36216055	36216056	rs3848662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.12		rs3848662-?	NR	3E-18				NR [~ 8900000] (imputed)	N
861	chr19	36219208	36219209	rs231592	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q13.12		rs231592-G	0.48	1E-17		8.53	z score increase	Affymetrix [9061022] (imputed)	N
861	chr19	36219208	36219209	rs231592	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19q13.12	NR	rs231592-G	0.4676	9E-14				NR [9056863] (imputed)	N
861	chr19	36228953	36228954	rs2242522	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	19q13.12	NR	rs2242522-?		4E-12	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
861	chr19	36230173	36230174	rs12459634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.12	IGFLR1, AD000671.6	rs12459634-C	0.144394	1E-15		0.025194725	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr19	36230173	36230174	rs12459634	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.12	IGFLR1	rs12459634-C	0.145	6E-100	(IGF-like family receptor 1, IGFLR1.7244.16.3)	0.7	[0.64-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
861	chr19	36237244	36237245	rs2293688	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q13.12	Intergenic	rs2293688-C	0.6589	5E-10	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
861	chr19	36240613	36240614	rs7260184	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.12	IGFLR1	rs7260184-G	0.8553125	4E-69	(IGFLR1, 7244_16_3)	0.5914668	[0.53-0.66] unit increase	Illumina [> 1000000] (imputed)	N
861	chr19	36240959	36240960	rs173003	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	19q13.12	NR	rs173003-?		1E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
861	chr19	36240959	36240960	rs173003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.12		rs173003-A	0.4934	6E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
861	chr19	36240959	36240960	rs173003	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.12	Intergenic	rs173003-A	0.4934	7E-11	(MTAG)	0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
861	chr19	36244752	36244753	rs2239947	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFLR1	5,365 Icelandic ancestry individuals	NA	19q13.12		rs2239947-C	0.1433	6E-123		0.590684	[0.54-0.64] unit decrease	Illumina [7506463] (imputed)	N
861	chr19	36249520	36249521	rs231237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	19q13.12	NR	rs231237-?		4E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
861	chr19	36249520	36249521	rs231237	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	19q13.12	NR	rs231237-?		6E-11	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
861	chr19	36251325	36251326	rs179570	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	19q13.12	SHFM1, C7orf76	rs179570-?		8E-13				NR [7428630] (imputed)	N
861	chr19	36252493	36252494	rs807478	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	19q13.12	PROSER3	rs807478-A	0.503838	2E-9		0.0122195	[0.0082-0.0163] unit decrease	NR [16516521] (imputed)	N
861	chr19	36252493	36252494	rs807478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19q13.12		rs807478-?	NR	1E-8				NR [~ 8900000] (imputed)	N
861	chr19	36253316	36253317	rs807479	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19q13.12	UPK1A, ZBTB32, KMT2B, IGFLR1, PSENEN, LIN37	rs807479-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
861	chr19	36253715	36253716	rs7256373	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFLR1	5,365 Icelandic ancestry individuals	NA	19q13.12		rs7256373-T	0.0861	6E-26		0.341263	[0.28-0.4] unit increase	Illumina [7506463] (imputed)	N
861	chr19	36254181	36254181	rs146222776	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.12	NR	rs146222776-CA	0.096	1E-27	(IGF-like family receptor 1, IGFLR1.7244.16.3)	0.45	[0.37-0.53] unit increase	Affymetrix [10572788] (imputed)	N
861	chr19	36266364	36266365	rs77750939	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.12		rs77750939-?	NR	1E-15				NR [~ 8900000] (imputed)	N
861	chr19	36268066	36268067	rs231227	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	19q13.12	ARHGAP33	rs231227-A	0.38	5E-6		0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
861	chr19	36273533	36273534	rs2291067	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Umami taste perception in obesity with metabolic syndrome	378 individuals	NA	19q13.12	ARHGAP33	rs2291067-A	0.184	8E-6	(adjusted for age and sex)	0.524	[0.29-0.76] unit decrease	Illumina [622468]	N
862	chr19	36329386	36329387	rs71354106	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Thrombomodulin levels	21,758 European ancestry individuals	9,173 individuals	19q13.12		rs71354106-A	0.069	3E-15		0.144	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
862	chr19	36332621	36332622	rs201194276	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	19q13.12		rs201194276-?	NR	3E-11		0.383801	[0.27-0.5] unit decrease	NR [9800000] (imputed)	N
862	chr19	36332621	36332622	rs201194276	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	19q13.12		rs201194276-?	NR	4E-12		0.393822	[0.28-0.5] unit decrease	NR [9800000] (imputed)	N
862	chr19	36342211	36342212	rs3814995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.12		rs3814995-T	NR	3E-21		0.0161	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
862	chr19	36342211	36342212	rs3814995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.12	NR	rs3814995-T	NR	7E-15		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
862	chr19	36342211	36342212	rs3814995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.12	NR	rs3814995-T	NR	2E-16		0.0213	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
862	chr19	36342211	36342212	rs3814995	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.12		rs3814995-C	0.688405	3E-9		0.013	[0.0091-0.0169] unit decrease	NR [7250403] (imputed)	N
862	chr19	36342211	36342212	rs3814995	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.12	NR	rs3814995-T	0.31224	3E-12		0.014733	[0.011-0.019] unit decrease	Affymetrix [16668957] (imputed)	N
862	chr19	36342266	36342267	rs2285450	32554042	Jia X	2020-06-14	Kidney Int	Common risk variants in NPHS1 and TNFSF15 are associated with childhood steroid-sensitive nephrotic syndrome.	Childhood steroid-sensitive nephrotic syndrome	987 Japanese ancestry cases, 3,206 Japanese ancestry controls	249 Korean ancestry cases, 181 South Asian ancestry cases, 207 African ancestry cases, 307 European ancestry cases, 27 Hispanic cases, 85 Maghrebian ancestry cases, 3805 Korean ancestry controls, 8,255 South Asian ancestry controls, 5,657 African ancestry controls, 35,913 European ancestry controls, 5,789 Hispanic controls, 261 Moroccan ancestry controls	19q13.12	NR	rs2285450-A	NR	7E-28		1.88	[1.68-2.11]	Affymetrix [6834340] (imputed)	N
862	chr19	36347399	36347400	rs447707	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	19q13.12	KIRREL2	rs447707-G	NR	5E-8	(Octanoylcarnitine)	0.513646	[0.33-0.7] unit decrease	Illumina [up to 9281895] (imputed)	N
862	chr19	36362161	36362162	rs11551002	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	19q13.12	APLP1	rs11551002-?	0.0	2E-13				Affymetrix [547296]	N
862	chr19	36429627	36429628	rs112223886	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	19q13.12		rs112223886-C	0.97659	7E-6		0.0386361	[0.02-0.057] unit decrease	Illumina [13900000] (imputed)	N
863	chr19	36530912	36530913	rs3810449	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	19q13.12	NR	rs3810449-?	NR	2E-8		1.090572	[1.06-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
864	chr19	36642883	36642884	rs17879437	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	19q13.12	COX7A1	rs17879437-C	0.7681	6E-7	(Case/control)	0.4789	[0.29-0.67] unit increase	Affymetrix, Illumina [NR] (imputed)	N
864	chr19	36662924	36662925	rs56898944	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.12	AC002984.2	rs56898944-A	0.114241	5E-9		0.022028409	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
864	chr19	36665526	36665527	rs7249000	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.12	AC002984.1	rs7249000-C	0.8363	2E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
864	chr19	36683704	36683705	rs62113093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19q13.12		rs62113093-?	NR	1E-8				NR [~ 8900000] (imputed)	N
864	chr19	36699487	36699488	rs10416925	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	19q13.12	ZNF565	rs10416925-C	0.21	6E-6		0.17	[0.097-0.243] unit decrease	Illumina [6380737] (imputed)	N
864	chr19	36699487	36699488	rs10416925	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	19q13.12	ZNF565	rs10416925-C	0.21	5E-7	(male)	0.268	[0.16-0.37] unit decrease	Illumina [6380737] (imputed)	N
865	chr19	36731057	36731058	rs12104412	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	19q13.12	ZNF146	rs12104412-T	0.1454007832898172	6E-7	(AA)	0.4939	[0.3-0.69] unit increase	Illumina [at least 988306] (imputed)	N
865	chr19	36746189	36746190	rs73040130	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	19q13.12	NR	rs73040130-C		6E-7		0.2638	[0.16-0.37] SD units decrease	NR [10700000] (imputed)	N
865	chr19	36751635	36751636	rs55697131	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.12		rs55697131-G	0.209338	9E-10		0.016675904	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr19	36752840	36752841	rs75947264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.12		rs75947264-T	0.200114	8E-11		0.01818845	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr19	36752840	36752841	rs75947264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs75947264-T	0.193115	6E-14				Affymetrix, Illumina [23467995] (imputed)	N
865	chr19	36752840	36752841	rs75947264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.12	NR	rs75947264-T	0.199525	7E-15		0.019037	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
865	chr19	36817153	36817154	rs3111555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.12		rs3111555-C	NR	3E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
866	chr19	36832049	36832050	rs75094162	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	19q13.12	ZFP14	rs75094162-T		2E-6	(AA)	2.9411764	[1.15-7.14]	Affymetrix, Illumina [NR] (imputed)	N
866	chr19	36876317	36876318	rs71354195	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	19q13.12	NR	rs71354195-?	NR	8E-7	(AA, adjusted for duration of diabetes and glycemic control)	2.42	[NR]	Affymetrix, Illumina [NR] (imputed)	N
866	chr19	36876317	36876318	rs71354195	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	19q13.12	NR	rs71354195-?	NR	5E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.5	[NR]	Affymetrix, Illumina [NR] (imputed)	N
866	chr19	36881642	36881643	rs2967516	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	19q13.12	ZFP82	rs2967516-A	0.709	4E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
866	chr19	36904584	36904585	rs73043899	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	19q13.12	NR	rs73043899-A	0.006878	4E-6		0.8459	[0.49-1.21] unit decrease	Illumina [10677593] (imputed)	N
867	chr19	36997146	36997147	rs7251730	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.12	ZNF260	rs7251730-T	0.3452	4E-12		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
867	chr19	37006566	37006567	rs113393842	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	19q13.12	ZNF260	rs113393842-C	0.01	8E-7		0.3822	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
867	chr19	37017632	37017633	rs57126710	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19q13.12	ZNF260	rs57126710-T	0.3501	8E-12		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
867	chr19	37038192	37038193	rs1376217616	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.12	ZNF529	rs1376217616-?		1E-8		0.6	[0.38-0.82] unit decrease	Illumina [31500000] (imputed)	N
869	chr19	37262455	37262456	rs11672567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.12	ZNF850	rs11672567-C	0.248124	3E-9		0.015426944	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
869	chr19	37263237	37263238	rs182323560	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	19q13.12	ZNF850	rs182323560-C	0.0032	5E-7		0.3786	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
869	chr19	37353346	37353347	rs375575359	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		19q13.12	NR	rs375575359-C	0.0332962	7E-6		1.20181	[1.11714-1.29291]	Affymetrix [16499239] (imputed)	N
870	chr19	37358964	37358965	rs144606071	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.12	NR	rs144606071-C	0.01045	3E-8	(ITIH4)	0.04952	NR unit increase	Illumina [1671387] (imputed)	N
870	chr19	37358964	37358965	rs144606071	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.12	NR	rs144606071-C	0.01045	2E-9	(SERPINF1)	0.02427	NR unit increase	Illumina [1671387] (imputed)	N
870	chr19	37376829	37376830	rs34217742	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	19q13.12	NR	rs34217742-A	0.12	8E-6		1.56	[1.29-1.88]	Illumina [5216266] (imputed)	N
870	chr19	37392609	37392610	rs73626749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.12	ZNF829, ZNF345	rs73626749-G	0.035558	5E-10		0.037100956	[0.025-0.049] unit increase	Affymetrix [93095623] (imputed)	N
870	chr19	37439640	37439641	rs138867053	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	19q13.12	Intergenic	rs138867053-A	0.017	4E-7		1.285	[NR]	Illumina [9112387] (imputed)	N
870	chr19	37440362	37440363	rs17242235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.12	ZNF568	rs17242235-A	NR	4E-9		0.0238315	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
870	chr19	37440362	37440363	rs17242235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.12	ZNF568	rs17242235-A	NR	1E-8		0.0229285	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
870	chr19	37446521	37446522	rs500126	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	19q13.12	ZNF568	rs500126-T	0.4178	6E-6		0.0074	[0.0043-0.0105] unit increase	Affymetrix [~ 7740000] (imputed)	N
870	chr19	37453238	37453238	rs372592562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.12		rs372592562-CT	NR	4E-11		0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
870	chr19	37482816	37482817	rs2547049	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19q13.12	NR	rs2547049-A	0.534	7E-8		0.0096	[0.0061-0.0131] unit increase	NR [~ 27400000] (imputed)	N
871	chr19	37489616	37489617	rs1667369	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19q13.12	ZNF568	rs1667369-A	NR	3E-8		0.00725313	[0.0047-0.0098] unit increase	Affymetrix [10061374] (imputed)	N
871	chr19	37493687	37493688	rs73041129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.12	ZNF568	rs73041129-C	NR	2E-8		0.0233765	[0.015-0.032] unit decrease	Affymetrix [321114] (imputed)	N
871	chr19	37493687	37493688	rs73041129	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.12	ZNF568	rs73041129-C	NR	1E-10		0.0270413	[0.019-0.035] unit decrease	Affymetrix [321169] (imputed)	N
871	chr19	37500917	37500918	rs703530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.12		rs703530-?	NR	2E-12				NR [~ 8900000] (imputed)	N
871	chr19	37517313	37517314	rs10424411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.12		rs10424411-C	NR	2E-22		0.0137	[0.011-0.016] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
871	chr19	37549755	37549756	rs117875908	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	19q13.12	ZNF420	rs117875908-?		3E-6				Illumina [2668805]	N
871	chr19	37570718	37570719	rs62108897	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.12	ZNF420	rs62108897-A	0.5246	8E-19		0.0171	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
871	chr19	37572407	37572407	rs34091203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.12	ZNF420	rs34091203-AT	0.364868	9E-16		0.019037899	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr19	37572407	37572407	rs34091203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.12	NR	rs34091203-I	0.364774	2E-13		0.016063	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
871	chr19	37585987	37585988	rs1148394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.12	CTC-454I21.3, ZNF420	rs1148394-C	0.249389	1E-9		0.015852265	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr19	37609513	37609514	rs56165321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19q13.12	ZNF420, CTC-454I21.3, ZNF585A	rs56165321-C	NR	2E-8		0.0160661	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
871	chr19	37617608	37617609	rs10416428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.12	ZNF420, CTC-454I21.3, ZNF585A	rs10416428-A	NR	5E-9		0.0185817	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
871	chr19	37617608	37617609	rs10416428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.12	ZNF420, CTC-454I21.3, ZNF585A	rs10416428-A	NR	3E-8		0.0176648	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
871	chr19	37617608	37617609	rs10416428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	19q13.12	ZNF420, CTC-454I21.3, ZNF585A	rs10416428-A	NR	6E-9		0.0186486	[0.012-0.025] unit decrease	Affymetrix [321169] (imputed)	N
872	chr19	37649747	37649748	rs78241494	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.12	ZNF585A	rs78241494-T	0.6965	2E-21		0.003	[0.0022-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
872	chr19	37649865	37649866	rs111827672	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19q13.12	ZNF585A	rs111827672-A	0.3171	2E-21		0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
872	chr19	37651713	37651714	rs12980849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.12		rs12980849-?	NR	3E-32				NR [~ 8900000] (imputed)	N
872	chr19	37667427	37667428	rs117896655	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	19q13.12	ZNF585A	rs117896655-?		3E-6				Illumina [2668805]	N
872	chr19	37671255	37671256	rs1234251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.12	CTC-454I21.3	rs1234251-C	0.389805	2E-13		0.016589142	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr19	37677747	37677748	rs45626541	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs45626541-A	0.337834	6E-11				Affymetrix, Illumina [19872809] (imputed)	N
872	chr19	37684965	37684966	rs11673344	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	19q13.12	ZNF585B	rs11673344-G	0.38018399999999997	8E-10		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
872	chr19	37684965	37684966	rs11673344	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	19q13.12	ZNF585B	rs11673344-G	0.38018399999999997	5E-8		1.03	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
872	chr19	37684965	37684966	rs11673344	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.12	ZNF585B	rs11673344-G	0.411	5E-6	(Diet carbohydrate )	0.03	[NR] %energy increase	Illumina [899892]	N
872	chr19	37732814	37732815	rs78314652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.12	NR	rs78314652-T	0.0507325	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
872	chr19	37747107	37747108	rs7246657	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	19q13.12	ZNF383	rs7246657-T	0.53	7E-6	(AA)	0.16	[0.082-0.238] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
872	chr19	37747798	37747799	rs1226598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.12	AC012309.5	rs1226598-A	NR	5E-9		0.0167817	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
872	chr19	37747798	37747799	rs1226598	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.12	AC012309.5	rs1226598-A	NR	4E-8		0.0158617	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
873	chr19	37855838	37855839	rs256741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.12		rs256741-?	NR	3E-8				NR [~ 8900000] (imputed)	N
873	chr19	37856516	37856517	rs71354939	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.12	NR	rs71354939-A	0.0922	1E-9		0.0115015	[0.0078-0.0152] unit decrease	NR [9732723] (imputed)	N
873	chr19	37872507	37872508	rs62110383	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	19q13.12	NR	rs62110383-?	NR	6E-6		0.2596	[0.15-0.37] unit decrease	Illumina [at least 560000] (imputed)	N
874	chr19	37981346	37981347	rs76943786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19q13.12		rs76943786-A	0.08846	3E-9		0.0210049	[0.014-0.028] unit decrease	Illumina [13479295] (imputed)	N
874	chr19	37993636	37993637	rs11083424	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.12		rs11083424-T	NR	1E-8		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
875	chr19	38021544	38021545	rs147683721	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.12	ZNF793	rs147683721-?	NR	5E-8		0.027867118	[0.018-0.038] unit decrease	Illumina [27896057] (imputed)	N
875	chr19	38039674	38039675	rs11665759	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	19q13.12	ZNF571, AS1	rs11665759-G	0.05	2E-7	(African American)	0.63	[0.39-0.87] unit increase	Illumina [up to 13042663] (imputed)	N
875	chr19	38039674	38039675	rs11665759	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	19q13.12	ZNF571-AS1	rs11665759-?	NR	8E-7	(MR-MEGA)			Illumina [3153931] (imputed)	N
875	chr19	38068259	38068260	rs113712920	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	19q13.12	NR	rs113712920-A	0.9647906	2E-6		1.1350738	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
875	chr19	38078770	38078771	rs57654288	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19q13.12	ZNF793, ZNF540, ZNF571, ZFP30, ZNF781, ZNF607, ZNF573	rs57654288-?		7E-9				Affymetrix, Illumina [NR] (imputed)	N
875	chr19	38098788	38098789	rs62108261	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	19q13.12	NR	rs62108261-?	NR	7E-6		0.2643	[0.15-0.38] unit decrease	Illumina [at least 560000] (imputed)	N
876	chr19	38157968	38157969	rs113445505	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.12	ZNF781	rs113445505-T	0.3564	7E-35		0.0037	[0.0031-0.0043] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
876	chr19	38157968	38157969	rs113445505	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19q13.12	ZNF781	rs113445505-T	0.3686	3E-34		0.0038	[0.003-0.0046] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
876	chr19	38167621	38167622	rs34908476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.12		rs34908476-?	NR	1E-10				NR [~ 8900000] (imputed)	N
876	chr19	38186852	38186853	rs113757599	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.12		rs113757599-T	NR	3E-24		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
876	chr19	38205243	38205244	rs151087334	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		19q13.12	SIPA1L3	rs151087334-?	NR	2E-6				Affymetrix, Illumina [up to 10971307] (imputed)	N
876	chr19	38229925	38229926	rs11666245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.12		rs11666245-A	NR	2E-11		0.0382	[0.027-0.049] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.12	NR	rs11666245-G	0.953133	7E-20		0.0166347	[0.013-0.021] unit increase	Affymetrix [16582909] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.12	NR	rs11666245-G	0.953554	2E-9		0.01636	[0.011-0.022] unit increase	Affymetrix [16585854] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.12	NR	rs11666245-G	0.952689	1E-11		0.0170675	[0.012-0.022] unit increase	Affymetrix [16582621] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.12	NR	rs11666245-G	0.953133	3E-16		0.016522	[0.012-0.021] unit increase	Affymetrix [16582965] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.12	NR	rs11666245-G	0.953554	1E-7		0.0170076	[0.01-0.024] unit increase	Affymetrix [16585866] (imputed)	N
876	chr19	38229925	38229926	rs11666245	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.12	NR	rs11666245-G	0.952689	2E-9		0.0163325	[0.011-0.022] unit increase	Affymetrix [16582614] (imputed)	N
876	chr19	38229925	38229926	rs11666245	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.12	NR	rs11666245-G	0.95332	1E-14		0.0365132	[0.027-0.046] unit increase	NR [NR]	N
876	chr19	38239520	38239521	rs11673023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.12	NR	rs11673023-C	0.8291850000000001	1E-11		0.0074998	[0.0053-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
876	chr19	38239520	38239521	rs11673023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.12	NR	rs11673023-C	0.8291850000000001	5E-8		0.00669357	[0.0043-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
877	chr19	38325535	38325536	rs16975963	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	19q13.13	AC016582.2	rs16975963-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
877	chr19	38342848	38342849	rs62110225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.13		rs62110225-A	NR	1E-9		0.0213	[0.014-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
877	chr19	38342848	38342849	rs62110225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.13		rs62110225-A	NR	1E-10		0.0223	[0.016-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
877	chr19	38365062	38365063	rs7253870	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	19q13.13	WDR87	rs7253870-A	0.465	2E-14		0.0027	[0.0021-0.0033] unit increase	Affymetrix [NR] (imputed)	N
878	chr19	38424020	38424021	rs74495081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PARP11	5,353 Icelandic ancestry individuals	NA	19q13.13		rs74495081-T	0.01609	3E-14		0.133026	[0.099-0.167] unit increase	Illumina [7506463] (imputed)	N
878	chr19	38441135	38441136	rs17249336	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	19q13.13	SIPA1L3	rs17249336-C	0.7415	5E-8		5.464	NR z score decrease	Illumina [26237160] (imputed)	N
878	chr19	38444694	38444695	rs7254248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19q13.13		rs7254248-G	NR	1E-8		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
878	chr19	38455957	38455957	rs566071263	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	19q13.13	SIPA1L3	rs566071263-G	0.65	4E-11		0.386	[0.27-0.5] unit decrease	Affymetrix [NR] (imputed)	N
878	chr19	38455957	38455957	rs566071263	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	19q13.13	SIPA1L3	rs566071263-G	0.3518	5E-24	(EA)	0.0036	[0.0028-0.0044] unit increase	Affymetrix [NR] (imputed)	N
878	chr19	38464261	38464262	rs11666497	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	19q13.13	SIPA1L3	rs11666497-T	0.18	4E-8	(EA)	0.0058	[0.0036-0.008] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
878	chr19	38477056	38477057	rs833911	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	19q13.13	NR	rs833911-C	0.3599	3E-6		0.014266433	[0.0082-0.0203] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
878	chr19	38520323	38520324	rs148330122	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	19q13.13	SIPA1L3	rs148330122-C	NR	1E-9	(Bacilli class)	0.48	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
878	chr19	38524287	38524288	rs1654345	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	19q13.13	NR	rs1654345-A	0.7415	1E-7		0.0158	[0.01-0.0216] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
878	chr19	38524287	38524288	rs1654345	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	19q13.13	NR	rs1654345-A	0.7439	4E-6		0.0184	[0.011-0.026] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
879	chr19	38548093	38548094	rs59710626	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q13.13	NR	rs59710626-G	NR	1E-8		1.058	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
879	chr19	38554363	38554364	rs1626441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.13		rs1626441-?	NR	8E-9				NR [~ 8900000] (imputed)	N
879	chr19	38585189	38585190	rs1654363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.13		rs1654363-C	NR	2E-13		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
879	chr19	38591802	38591803	rs201178535	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	19q13.13	SIPA1L3	rs201178535-?	1.99521E-4	2E-16				Illumina [~ 244000]	N
879	chr19	38591802	38591803	rs201178535	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	19q13.13	SIPA1L3	rs201178535-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
879	chr19	38593150	38593151	rs12982734	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	19q13.13	SIPA1L3	rs12982734-?	NR	6E-6		0.099	[0.06-0.138] unit increase	Illumina [6319684] (imputed)	N
879	chr19	38597177	38597178	rs142085340	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	19q13.13	SIPA1L3	rs142085340-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
879	chr19	38597177	38597178	rs142085340	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	19q13.13	SIPA1L3	rs142085340-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
879	chr19	38597177	38597178	rs142085340	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	19q13.13	SIPA1L3	rs142085340-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
879	chr19	38602956	38602957	rs148051545	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	19q13.13	NR	rs148051545-C		4E-6		0.3921	[0.23-0.56] SD units increase	NR [10700000] (imputed)	N
879	chr19	38614850	38614851	rs8100057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q13.13	Intergenic	rs8100057-A	0.4677	4E-11		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
879	chr19	38619741	38619742	rs855614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.13	Intergenic	rs855614-A	0.4458	1E-11	(MTAG)	0.0122	[0.0087-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
879	chr19	38637745	38637746	rs8112798	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.13		rs8112798-A	0.47	2E-8		5.66	z score increase	Affymetrix [9061022] (imputed)	N
880	chr19	38689650	38689651	rs12975451	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.13	SIPA1L3	rs12975451-C	0.447195	1E-13		0.00388336	[0.0029-0.0049] unit decrease	Affymetrix [13995440] (imputed)	N
880	chr19	38717142	38717143	rs66666015	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	19q13.2	NR	rs66666015-T	0.74	9E-6		1.16	1.09-1.24	NR [at least 8807005] (imputed)	N
880	chr19	38726075	38726076	rs7253820	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.2		rs7253820-G	0.467149	2E-15		0.018263651	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
880	chr19	38726075	38726076	rs7253820	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19q13.2	intergenic	rs7253820-G	0.4678	7E-12		0.02560145	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr19	38735612	38735613	rs8102476	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	19q13.2	NR	rs8102476-C	NR	8E-11		1.1	NR	Affymetrix [at least 232408] (imputed)	N
880	chr19	38735612	38735613	rs8102476	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19q13.2	NR	rs8102476-C	0.54	9E-30		1.09	[1.08-1.11]	Illumina [20370935] (imputed)	N
880	chr19	38735612	38735613	rs8102476	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	19q13.2	intergenic	rs8102476-C	0.54	2E-11		1.12	[1.08-1.15]	Illumina [310520]	N
880	chr19	38735803	38735804	rs11667256	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	19q13.2	PPP1R14A	rs11667256-T	0.519994739629638	1E-14		0.004131	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
880	chr19	38738129	38738130	rs4802297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	19q13.2		rs4802297-C	NR	3E-22		0.1181	[0.094-0.142] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
880	chr19	38738129	38738130	rs4802297	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	19q13.2	NR	rs4802297-G	0.484588494	1E-11		1.1218854	[1.09-1.16]	Affymetrix, Illumina [20400945] (imputed)	N
880	chr19	38738129	38738130	rs4802297	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q13.2	NR	rs4802297-G	NR	7E-40		1.092	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
880	chr19	38747271	38747272	rs7247241	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	19q13.2		rs7247241-T	NR	4E-14		1.1163	NR	Affymetrix [7846216] (imputed)	N
880	chr19	38753624	38753625	rs7250689	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	19q13.2		rs7250689-?	NR	6E-11		1.11899	[1.09-1.15]	NR [680312]	N
880	chr19	38753624	38753625	rs7250689	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	19q13.2		rs7250689-T	NR	5E-10		1.105	[1.07-1.14]	Affymetrix [7846216] (imputed)	N
880	chr19	38758470	38758471	rs73930562	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.2	NR	rs73930562-A	NR	5E-11		0.0219	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
880	chr19	38759102	38759103	rs3786876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19q13.2		rs3786876-C	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
880	chr19	38759102	38759103	rs3786876	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19q13.2	SPINT2	rs3786876-C	0.15	1E-8		5.67	z-score increase	Affymetrix [4312306] (imputed)	N
880	chr19	38763004	38763005	rs10048529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.2	SPINT2	rs10048529-A	0.407966	1E-18		0.020277776	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
880	chr19	38765659	38765660	rs12608697	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.2	SPINT2	rs12608697-A	0.4059	3E-16		0.03053891	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
880	chr19	38768314	38768315	rs752388323	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	19q13.2		rs752388323-G	NR	3E-6		0.01455		Affymetrix, Illumina [62056310] (imputed)	N
880	chr19	38777146	38777147	rs8101185	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.2		rs8101185-T	0.571	7E-13				Affymetrix [10369434] (imputed)	N
880	chr19	38777146	38777147	rs8101185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.2	SPINT2	rs8101185-C	0.42923	7E-21		0.021361763	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
880	chr19	38778568	38778569	rs141683432	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	19q13.2	NR	rs141683432-C		1E-6		0.5271	[0.27-0.79] SD units decrease	NR [10700000] (imputed)	N
880	chr19	38782484	38782485	rs11548457	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINT2	5,362 Icelandic ancestry individuals	NA	19q13.2		rs11548457-C	0.03845	7E-143		1.16999	[1.08-1.26] unit decrease	Illumina [7506463] (imputed)	N
880	chr19	38791840	38791841	rs71354995	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	SPINT2	rs71354995-A	0.76328125	5E-331	(SPINT2, 2843_13_2)	1.0205885	[0.98-1.07] unit increase	Illumina [> 1000000] (imputed)	N
880	chr19	38791840	38791841	rs71354995	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	SPINT2	rs71354995-G	0.243	7E-416	(Kunitz-type protease inhibitor 2, SPINT2.2843.13.2)	0.99	[0.95-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
880	chr19	38794894	38794895	rs2304176	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.2	NR	rs2304176-?	NR	7E-33	(Kunitz-type protease inhibitor 2)			Illumina [514227]	N
880	chr19	38794894	38794895	rs2304176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.2	C19orf33	rs2304176-C	0.2248	9E-12		0.02958239	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38798085	38798086	rs3178327	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.2	NR	rs3178327-?	NR	4E-35	(SPINT2)			Illumina [~ 4000000] (imputed)	N
881	chr19	38810743	38810744	rs142888784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q13.2		rs142888784-G	NR	3E-23		0.0912	[0.073-0.109] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
881	chr19	38810743	38810744	rs142888784	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19q13.2	NR	rs142888784-G	0.02256	8E-27		0.008762	[0.0071-0.0104] unit decrease	Affymetrix [NR] (imputed)	N
881	chr19	38817627	38817628	rs35496032	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.2	NR	rs35496032-A	NR	4E-15		0.0857	[0.064-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
881	chr19	38824580	38824581	rs8112211	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	YIF1B, C19orf33, CATSPERG, CTB-102L5.4, KCNK6, AC005625.1	rs8112211-T	0.2547643	1E-88	(Kunitz-type protease inhibitor 2)	0.9467	[0.86-1.03] unit decrease	Affymetrix [509946]	N
881	chr19	38849709	38849710	rs57618695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs57618695-A	0.743885	2E-26				Affymetrix, Illumina [17210439] (imputed)	N
881	chr19	38850245	38850246	rs60071299	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.2	NR	rs60071299-G	0.749034	4E-29		0.024844	[0.021-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
881	chr19	38853658	38853659	rs11666449	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	19q13.2	NR	rs11666449-T	0.1849	5E-7	(recessive, male)	6.325569	[3.08289163783334-12.9789913468306]	Affymetrix, Illumina [6131010] (imputed)	N
881	chr19	38856371	38856372	rs73043037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.2	CATSPERG	rs73043037-A	0.249122	3E-18		0.022655057	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr19	38860457	38860458	rs78474816	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	D-dimer levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	19q13.2	CATSPERG	rs78474816-T	NR	4E-12	(AA)	1.379	[0.99-1.77] unit increase	Affymetrix [up to 12642786] (imputed)	N
881	chr19	38861332	38861333	rs1052375	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	19q13.2		rs1052375-?	NR	3E-8		0.90871	[0.87-0.94]	NR [680312]	N
881	chr19	38863463	38863464	rs34559316	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.2	PSMD8	rs34559316-C	0.809976	2E-8		0.0137492	[0.009-0.0185] unit increase	Affymetrix [NR] (imputed)	N
881	chr19	38898316	38898316	rs199829761	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19q13.2	NR	rs199829761-?	NR	9E-6		3.35	[2.63-4.26]	Illumina [539000] (imputed)	N
881	chr19	38899998	38899999	rs4802399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.2		rs4802399-A	NR	2E-11		0.0235	[0.017-0.03] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
881	chr19	38899998	38899999	rs4802399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.043079	7E-16		0.043987814	[0.033-0.055] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38899998	38899999	rs4802399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.043079	7E-17		0.04555349	[0.035-0.056] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38899998	38899999	rs4802399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs4802399-A	0.0624905	3E-21				Affymetrix, Illumina [19872809] (imputed)	N
881	chr19	38899998	38899999	rs4802399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.2	NR	rs4802399-A	0.043012	1E-18		0.043325	[0.034-0.053] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
881	chr19	38899998	38899999	rs4802399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs4802399-?	NR	1E-17				NR [~ 8900000] (imputed)	N
881	chr19	38899998	38899999	rs4802399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.0437	3E-9		0.05201517	[0.035-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38899998	38899999	rs4802399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.0437	2E-9		0.05248269	[0.035-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38899998	38899999	rs4802399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.0437	1E-9		0.0531737	[0.036-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38899998	38899999	rs4802399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.2	RASGRP4	rs4802399-A	0.0437	2E-9		0.05269587	[0.036-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38903031	38903032	rs34158728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	19q13.2		rs34158728-A	NR	1E-17		0.0514	[0.04-0.063] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
881	chr19	38903031	38903032	rs34158728	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19q13.2		rs34158728-G	0.971	1E-11				Affymetrix [10369434] (imputed)	N
881	chr19	38903031	38903032	rs34158728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.2	RASGRP4	rs34158728-A	0.028548	1E-53		0.10282001	[0.09-0.116] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38903031	38903032	rs34158728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.2	RASGRP4	rs34158728-A	0.028552	7E-57		0.10592197	[0.093-0.119] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38903031	38903032	rs34158728	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs34158728-A	0.0297843	9E-51				Affymetrix, Illumina [19905671] (imputed)	N
881	chr19	38903031	38903032	rs34158728	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.2	NR	rs34158728-A	0.028263	3E-53		0.094813	[0.083-0.107] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
881	chr19	38904179	38904180	rs9916978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.2	RASGRP4	rs9916978-A	0.029948	7E-10		0.040099557	[0.027-0.053] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38909210	38909211	rs34026587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs34026587-A	0.029613	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
881	chr19	38910786	38910787	rs41465445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.2	RASGRP4	rs41465445-T	0.057843	1E-10		0.03036792	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr19	38912763	38912764	rs892055	21182207	Salyakina D	2010-12-01	Autism Res	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	19q13.2	ODF3L2	rs892055-?	0.33	5E-6				Illumina [439282] (imputed)	N
881	chr19	38917862	38917863	rs12972609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.2	NR	rs12972609-A	0.028269	8E-12		0.038873	[0.028-0.05] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
881	chr19	38917979	38917980	rs143002957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.2	RASGRP4	rs143002957-A	0.00826300000000002	3E-31		0.14404173	[0.12-0.17] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38917979	38917980	rs143002957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.2	RASGRP4	rs143002957-A	0.00826499999999997	2E-33		0.14912832	[0.12-0.17] unit increase	Affymetrix [93095623] (imputed)	N
881	chr19	38925078	38925079	rs71356805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	19q13.2	RYR1	rs71356805-C	0.0277	4E-22		0.1033711	[0.082-0.124] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38925078	38925079	rs71356805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	19q13.2	RYR1	rs71356805-C	0.0277	2E-18		0.09288622	[0.072-0.114] unit increase	Affymetrix [~ 2500000] (imputed)	N
881	chr19	38925078	38925079	rs71356805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	19q13.2	RYR1	rs71356805-C	0.0277	3E-16		0.08747665	[0.067-0.108] unit increase	Affymetrix [~ 2500000] (imputed)	N
882	chr19	38975448	38975449	rs73030953	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	19q13.2	RYR1, RASGRP4, MAP4K1	rs73030953-G	0.02	5E-6		4.32	[2.18-8.55]	Illumina [1556551]	N
882	chr19	38976654	38976655	rs34934920	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.2	RYR1	rs34934920-T	0.025	4E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [18391927] (imputed)	N
882	chr19	38976654	38976655	rs34934920	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	19q13.2	RYR1	rs34934920-T	0.025	6E-6		0.04	[0.024-0.056] unit decrease	Affymetrix [18391927] (imputed)	N
882	chr19	38989880	38989881	rs147213895	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	19q13.2		rs147213895-?	NR	6E-11		0.165925	[0.12-0.22] unit increase	NR [9800000] (imputed)	N
882	chr19	38993555	38993556	rs1469698	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	19q13.2	NR	rs1469698-T		4E-6		0.4002	[0.23-0.57] unit increase	Illumina [NR] (imputed)	N
882	chr19	39006279	39006280	rs78100904	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	19q13.2	RYR1	rs78100904-A	NR	6E-6		0.48165086	[0.28-0.69] unit decrease	Illumina [> 6200000] (imputed)	N
882	chr19	39014183	39014184	rs3786829	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (parent-of-origin effect)	247 European ancestry trios, 7 European ancestry father-child pairs, 33 European ancestry mother-child pairs, 14 European ancestry affected child	NA	19q13.2	RYR1	rs3786829-?	NR	2E-6				Illumina [NR]	N
883	chr19	39131548	39131549	rs142175722	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	19q13.2	NR	rs142175722-?	NR	7E-6		0.030003	[0.017-0.043] unit increase	Affymetrix [805426] (imputed)	N
883	chr19	39136104	39136105	rs113386919	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.2	ACTN4	rs113386919-T	0.130424	1E-9		0.020188725	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
883	chr19	39138607	39138608	rs2303040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q13.2		rs2303040-C	NR	7E-9		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
883	chr19	39138607	39138608	rs2303040	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	19q13.2	MAGI1	rs2303040-?		1E-11				NR [7428630] (imputed)	N
883	chr19	39138607	39138608	rs2303040	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	19q13.2	FIP1L1, CHIC2, AC110792.1	rs2303040-?		3E-11				NR [7428630] (imputed)	N
883	chr19	39139912	39139913	rs66959926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.2	ACTN4	rs66959926-T	0.0692	7E-6		0.0651	[0.037-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
883	chr19	39139912	39139913	rs66959926	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.2	ACTN4	rs66959926-T	0.0692	7E-6		0.0651	[0.037-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
883	chr19	39143883	39143884	rs12460849	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q13.2		rs12460849-A	0.43	8E-18		8.6	z score increase	Affymetrix [9061022] (imputed)	N
883	chr19	39143883	39143884	rs12460849	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19q13.2	NR	rs12460849-A	0.4907	8E-17				NR [9056863] (imputed)	N
883	chr19	39143883	39143884	rs12460849	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q13.2	EIF3K, ACTN4, CAPN12	rs12460849-?		8E-14				NR [7428630] (imputed)	N
883	chr19	39144243	39144244	rs979971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19q13.2		rs979971-T	0.587447	9E-12		0.0229037	[0.016-0.029] unit decrease	Illumina [13478928] (imputed)	N
883	chr19	39147509	39147510	rs75403087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19q13.2	NR	rs75403087-A	NR	5E-9		0.0242	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr19	39151033	39151034	rs1808382	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.2		rs1808382-T	0.43	5E-13		7.22	z score increase	Affymetrix [9061022] (imputed)	N
883	chr19	39151033	39151034	rs1808382	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19q13.2		rs1808382-T	0.43	7E-16		8.07	z score increase	Affymetrix [9061022] (imputed)	N
883	chr19	39151033	39151034	rs1808382	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q13.2	NR	rs1808382-T	0.483	2E-13				NR [9056863] (imputed)	N
883	chr19	39151033	39151034	rs1808382	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Retinal venular tortuosity	3,094 European ancestry individuals	1,413 European ancestry individuals	19q13.2	ACTN4	rs1808382-T	0.47	2E-13		0.109	[0.08-0.138] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
883	chr19	39170855	39170856	rs60687267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	19q13.2	NR	rs60687267-T	0.424955	3E-10		0.023693	[0.016-0.031] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
883	chr19	39174331	39174332	rs973009	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	19q13.2	intergenic	rs973009-?	0.87	4E-6		1.18	[1.1-1.27]	Affymetrix, Illumina [~ 2300000] (imputed)	N
883	chr19	39178480	39178481	rs62121823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.2		rs62121823-A	NR	9E-29		0.0434	[0.036-0.051] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
883	chr19	39178652	39178653	rs78400579	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.2		rs78400579-G	0.941	4E-15				Affymetrix [10369434] (imputed)	N
883	chr19	39179278	39179279	rs35941349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs35941349-G	0.0635833	5E-43				Affymetrix, Illumina [24588908] (imputed)	N
883	chr19	39179278	39179279	rs35941349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.2	NR	rs35941349-G	0.066283	3E-44		0.051368	[0.044-0.059] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
883	chr19	39182564	39182565	rs3786839	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	19q13.2	AZGP1, ZKSCAN1, ZSCAN21, ZNF3, COPS6, MCM7, AP4M1, TAF6, CNPY4, MBLAC1, LAMTOR4, C7orf43, GAL3ST4, GPC2, STAG3, GATS, PVRIG, SPDYE3, PILRB, PILRA, ZCWPW1, MEPCE, PPP1R35, C7orf61, TSC22D4, NYAP1, AGFG2, LRCH4, SAP25, FBXO24, PCOLCE	rs3786839-?		6E-10				NR [7428630] (imputed)	N
883	chr19	39184668	39184669	rs34105297	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	19q13.2	ACTN4	rs34105297-G	0.08	7E-7	(EA)	0.48	[0.28-0.68] unit increase	Illumina [up to 13042663] (imputed)	N
883	chr19	39184668	39184669	rs34105297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs34105297-?	NR	7E-10				NR [~ 8900000] (imputed)	N
883	chr19	39188111	39188112	rs11083475	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	19q13.2	ACTN4	rs11083475-G	0.537	2E-6				Affymetrix, Illumina [2516789] (imputed)	N
884	chr19	39210592	39210593	rs62119115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.2	ACTN4	rs62119115-A	0.242778	1E-14		0.020255439	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr19	39223735	39223735	rs547948198	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.2	CAPN12	rs547948198-TG	0.478279	3E-15		0.017827824	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
884	chr19	39223735	39223735	rs547948198	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	19q13.2	NR	rs547948198-?		6E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
884	chr19	39229088	39229089	rs12983010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.2	CAPN12	rs12983010-G	0.067207	2E-28		0.04964839	[0.041-0.058] unit increase	Affymetrix [93095623] (imputed)	N
884	chr19	39229958	39229959	rs12976598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.2	CTD-2540F13.2	rs12976598-A	0.0644	7E-12		0.0511882	[0.037-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr19	39230045	39230046	rs55945853	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	LGALS4	rs55945853-G	0.5103125	8E-14	(LGALS4, 2982_82_2)	0.18123566	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
884	chr19	39233968	39233969	rs36125859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.2	CAPN12	rs36125859-G	0.063761	2E-16		0.03987594	[0.03-0.049] unit increase	Affymetrix [93095623] (imputed)	N
884	chr19	39249305	39249306	rs10407371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS4	5,346 Icelandic ancestry individuals	NA	19q13.2		rs10407371-T	0.494	4E-18		0.151161	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
884	chr19	39251879	39251880	rs112108866	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	19q13.2	ACTN4, CAPN12, LGALS7, LGALS7B, LGALS4, ECH1, HNRNPL	rs112108866-A	0.03	4E-7		0.69	[0.42-0.96] unit decrease	Illumina [7992243] (imputed)	N
884	chr19	39255518	39255518	rs142904909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.2		rs142904909-CAGAG	NR	2E-12		0.012	[0.0087-0.0153] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
884	chr19	39304401	39304402	rs4802890	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	ECH1	rs4802890-G	0.92	2E-33	(ECH1, 12662_82_3)	0.53329325	[0.45-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
884	chr19	39307102	39307103	rs2229259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ECH1	5,365 Icelandic ancestry individuals	NA	19q13.2		rs2229259-T	0.08513	6E-42		0.458352	[0.39-0.52] unit increase	Illumina [7506463] (imputed)	N
885	chr19	39345908	39345909	rs140569062	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	19q13.2	HNRNPL	rs140569062-T	0.2922	2E-6	(EA)			Illumina [4404269] (imputed)	N
885	chr19	39379769	39379770	rs144373891	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	SIR2-like protein 2 levels	21,758 European ancestry individuals	9,173 individuals	19q13.2		rs144373891-T	0.016	7E-34		0.5516	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
885	chr19	39393497	39393498	rs12972925	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.2	NFKBIB	rs12972925-A	0.398937	1E-11		0.00344429	[0.0024-0.0045] unit decrease	Affymetrix [13995440] (imputed)	N
885	chr19	39398630	39398631	rs3136644	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	19q13.2	NR	rs3136644-?	NR	7E-7		1.1388	[0.74-1.54] unit decrease	Affymetrix [7154205] (imputed)	N
885	chr19	39416886	39416887	rs11544093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.2		rs11544093-T	NR	5E-14		0.0118	[0.0087-0.0149] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
885	chr19	39438531	39438532	rs12983238	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	19q13.2	CTC-360G5.8	rs12983238-A	0.307	3E-10		0.1266	[0.087-0.166] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
885	chr19	39449512	39449513	rs10401843	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	19q13.2	FBXO17	rs10401843-?	NR	2E-7		0.2246	NR	Illumina [802276]	N
886	chr19	39462230	39462231	rs12052182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs12052182-?	NR	6E-8				NR [~ 8900000] (imputed)	N
886	chr19	39482421	39482422	rs1672658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs1672658-?	NR	3E-11				NR [~ 8900000] (imputed)	N
886	chr19	39509026	39509027	rs12971842	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs12971842-T	0.5	5E-6		1.01	[-1.048-3.068]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39509135	39509136	rs12985447	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs12985447-C	0.5	5E-6		1.05	[-1.0276-3.1276]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39517960	39517961	rs12972978	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs12972978-T	0.5	5E-6		1.05	[-1.0276-3.1276]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39522890	39522891	rs3848623	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs3848623-C	0.5	5E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39523083	39523084	rs7259801	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs7259801-G	0.5	4E-6		1.02	[-1.0184-3.0584]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39523840	39523841	rs11670486	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11670486-G	0.5	4E-6		1.3	[-0.8364-3.4364]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39523892	39523893	rs11670520	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11670520-G	0.5	4E-6		1.0	[-1.0384-3.0384]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39524096	39524097	rs7248513	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs7248513-A	0.5	4E-6		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39524171	39524172	rs7248652	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs7248652-C	0.5	4E-6		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525044	39525045	rs4280369	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4280369-C	0.5	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525225	39525226	rs11083499	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11083499-G	0.5	4E-6		1.0	[-1.0776-3.0776]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525635	39525636	rs10416823	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10416823-G	0.5	4E-6		1.1235955	[-0.9736-3.2208]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525780	39525781	rs1840748	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs1840748-C	0.5	3E-6		1.07	[-1.0076-3.1476]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525800	39525801	rs1840747	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs1840747-G	0.5	3E-6		1.010101	[-1.0283-3.0485]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525805	39525806	rs1840746	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs1840746-C	0.5	3E-6		1.010101	[-1.0871-3.1073]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39525911	39525912	rs1840745	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs1840745-A	0.5	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526060	39526061	rs11083500	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11083500-T	0.5	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526152	39526153	rs36154890	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs36154890-C	0.5	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526326	39526327	rs4803185	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4803185-A	0.5	4E-6		1.0638298	[-0.99417-3.12183]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526397	39526398	rs4803186	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4803186-G	0.51	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526440	39526440	rs35517564	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs35517564-TA	0.5	4E-6		1.0416667	[-1.07513-3.15847]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526545	39526546	rs11880441	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11880441-C	0.51	4E-6		1.098901	[-0.9787-3.1765]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526641	39526642	rs4803187	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4803187-C	0.49	4E-6		1.0	[-1.058-3.058]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526802	39526803	rs11083501	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11083501-G	0.51	5E-6		1.0752687	[-0.98273-3.13327]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526903	39526903	rs34589249	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs34589249-AT	0.5	3E-6		1.0752687	[-0.94353-3.09407]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526923	39526924	rs11083502	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs11083502-A	0.49	4E-6		1.07	[-1.0076-3.1476]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39526994	39526995	rs12972850	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs12972850-C	0.49	4E-6		1.03	[-1.0476-3.1076]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39527428	39527429	rs10853725	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10853725-C	0.49	4E-6		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39527507	39527508	rs7247801	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs7247801-C	0.51	4E-6		1.0416667	[-1.05553-3.13887]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39527594	39527595	rs6508842	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs6508842-A	0.51	4E-6		1.0204082	[-0.99839-3.03921]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39527624	39527625	rs6508843	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs6508843-G	0.51	4E-6		1.0416667	[-1.01633-3.09967]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528021	39528021	rs769369572	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs769369572-TGTCC	0.18	5E-6		1.06	[-1.0568-3.1768]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528202	39528203	rs8104751	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs8104751-C	0.49	4E-6		1.02	[-0.9988-3.0388]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528375	39528376	rs8104899	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs8104899-C	0.5	5E-6		1.03	[-1.0476-3.1076]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528394	39528395	rs8104990	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs8104990-C	0.5	4E-6		1.07	[-0.9684-3.1084]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528413	39528414	rs8105865	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs8105865-T	0.5	5E-6		1.05	[-1.0472-3.1472]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528642	39528642	rs770411385	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs770411385-G	0.51	5E-6		1.010101	[-1.0675-3.0877]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39528931	39528932	rs10417436	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10417436-G	0.5	5E-6		1.02	[-1.0576-3.0976]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39529606	39529607	rs10420169	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10420169-C	0.52	4E-6		1.1235955	[-0.9736-3.2208]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39529614	39529615	rs10418986	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10418986-A	0.52	4E-6		1.0204082	[-1.01799-3.05881]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39529615	39529616	rs10418645	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10418645-C	0.48	4E-6		1.07	[-1.0076-3.1476]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39529622	39529623	rs10418648	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10418648-C	0.48	4E-6		1.07	[-0.988-3.128]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39529793	39529794	rs7258862	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs7258862-C	0.49	4E-6		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39530011	39530012	rs10424632	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10424632-T	0.51	5E-6		1.0526316	[-1.12297-3.22823]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39530095	39530096	rs10424827	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10424827-C	0.49	4E-6		1.01	[-1.0284-3.0484]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39531431	39531432	rs4803188	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4803188-C	0.49	5E-6		1.0	[-1.058-3.058]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39531640	39531641	rs569337	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs569337-T	0.28	2E-6		1.04	[-0.9788-3.0588]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39532183	39532184	rs681921	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs681921-G	0.28	2E-6		1.01	[-1.0088-3.0288]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39533468	39533469	rs476616	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs476616-G	0.28	4E-6		1.03	[-0.9888-3.0488]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39533753	39533754	rs473878	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs473878-C	0.28	3E-6		1.04	[-1.018-3.098]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39533936	39533937	rs472104	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs472104-G	0.28	5E-6		1.01	[-1.0872-3.1072]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39534890	39534891	rs617085	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs617085-G	0.28	2E-6		1.04	[-0.9788-3.0588]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39535782	39535783	rs4803194	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs4803194-C	0.28	2E-6		1.03	[-0.9888-3.0488]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39535926	39535927	rs631879	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs631879-G	0.72	3E-6		1.010101	[-1.0087-3.0289]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39536374	39536375	rs497378	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs497378-C	0.28	3E-6		1.06	[-0.9784-3.0984]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39537703	39537704	rs10403886	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs10403886-C	0.72	3E-6		1.0309278	[-1.04667-3.10853]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39539910	39539911	rs599752	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs599752-T	0.72	3E-6		1.0752687	[-1.00233-3.15287]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39539956	39539957	rs600128	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs600128-C	0.72	4E-6		1.010101	[-1.0283-3.0485]	Affymetrix [at least 143006] (imputed)	N
886	chr19	39547305	39547308	rs112691865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.2		rs112691865-C	NR	1E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
886	chr19	39580736	39580737	rs472265	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	19q13.2	FLJ16165	rs472265-G	0.22	9E-6	(Indian)	1.39	[1.20-1.61]	Illumina [~ 2000000] (imputed)	N
887	chr19	39583979	39583980	rs144026674	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19q13.2	NR	rs144026674-T	NR	3E-8		5.531	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
887	chr19	39584398	39584399	rs8111459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.2	NR	rs8111459-A	0.01916	2E-8	(GPX4)	0.01159	NR unit decrease	Illumina [1671387] (imputed)	N
887	chr19	39682599	39682600	rs144427251	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.2	NR	rs144427251-?	NR	9E-6		4.444	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
888	chr19	39720964	39720965	rs111249728	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	19q13.2		rs111249728-C	NR	3E-7		2.6845636	NR	Affymetrix [7846216] (imputed)	N
888	chr19	39731782	39731783	rs12980275	22497812	Clark PJ	2012-02-22	J Viral Hepat	Interleukin 28B polymorphisms are the only common genetic variants associated with low-density lipoprotein cholesterol (LDL-C) in genotype-1 chronic hepatitis C and determine the association between LDL-C and treatment response.	Lipid levels in hepatitis C treatment	1,017 European ancestry cases, 207 African American cases, 95 Hispanic cases	NA	19q13.2	IL28B	rs12980275-?	NR	5E-17				Illumina [565759]	N
888	chr19	39732500	39732501	rs8105790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	19q13.2		rs8105790-C	0.099520781	3E-12		0.38373756	[0.28-0.49] unit increase	Illumina [13427386] (imputed)	N
888	chr19	39732751	39732752	rs688187	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	19q13.2	NR	rs688187-A	0.312892	1E-22		1.4258754	[1.32592116400102-1.5333648423891]	Illumina [11595112] (imputed)	N
888	chr19	39732751	39732752	rs688187	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	19q13.2	IFNL3, IFNL4	rs688187-?	0.68	7E-13		1.4925373	[1.33-1.67]	Illumina [15504273] (imputed)	N
888	chr19	39732751	39732752	rs688187	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	19q13.2	IFNL3, IFNL4	rs688187-?	0.68	1E-8	(Invasive Only)	1.4084507	[1.25-1.59]	Illumina [15504273] (imputed)	N
888	chr19	39734219	39734220	rs4803217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	19q13.2		rs4803217-A	0.105533202	1E-22		0.28809556	[0.23-0.35] unit increase	Illumina [13429570] (imputed)	N
888	chr19	39736718	39736719	rs8107030	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Hepatocellular carcinoma	1,866 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	19q13.2		rs8107030-G	0.100665624	8E-10		1.4438809	[1.284266499-1.623333001]	Illumina [8919992] (imputed)	N
888	chr19	39737575	39737576	rs370209610	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	19q13.2	IFNL4	rs370209610-T	0.981	6E-13		0.023	[0.016-0.029] unit decrease	NR [57525634] (imputed)	N
888	chr19	39738786	39738787	rs12979860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ovarian cyst	10,847 European ancestry cases, 207,622 European ancestry controls, 2,896 East Asian ancestry cases, 79,865 East Asian ancestry controls	NA	19q13.2		rs12979860-T	NR	2E-8		0.085	[0.055-0.115] unit decrease	Affymetrix, Illumina [25752875] (imputed)	N
888	chr19	39738786	39738787	rs12979860	23420232	Duggal P	2013-02-19	Ann Intern Med	Genome-wide association study of spontaneous resolution of hepatitis C virus infection: data from multiple cohorts.	Chronic hepatitis C infection	1,482 chronic HCV cases, 919 spontaneously cleared HCV cases	461 chronic HCV cases, 284 spontaneously cleared HCV cases	19q13.2	IL-28B	rs12979860-?	NR	2E-30		2.2		Illumina [792721] (imputed)	N
888	chr19	39738786	39738787	rs12979860	19684573	Ge D	2009-08-16	Nature	Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance.	Response to hepatitis C treatment	871 European ancestry cases, 191 African American cases, 75 Hispanic cases	NA	19q13.2	IL28B	rs12979860-C	0.72	1E-28	(combined, EA)	2.0	[1.8-2.3]	Illumina [565759]	N
888	chr19	39739128	39739129	rs4803221	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Pre-treatment viral load in hepatitis C virus genotype 3	1,498 European, Asian and unknown ancestry individuals	NA	19q13.2	NR	rs4803221-?	NR	2E-11		0.284517	[0.21-0.36] unit decrease	Affymetrix [~ 18000000] (imputed)	N
888	chr19	39739152	39739155	rs778086851	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	19q13.2	IFNL3, IFNL4	rs778086851-CT	0.51	5E-21	(female)	2.5	[NR]	Illumina [5730693] (imputed)	N
888	chr19	39739154	39739155	rs74597329	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	19q13.2	IFNL3, IFNL4	rs74597329-T	0.52	4E-25	(male)	2.19	[NR]	Illumina [5730693] (imputed)	N
888	chr19	39739154	39739155	rs74597329	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	19q13.2	NR	rs74597329-?	NR	2E-7		1.59	NR	Affymetrix [~ 18000000] (imputed)	N
888	chr19	39739154	39739155	rs74597329	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	701 European ancestry cases, 1,035 European ancestry controls, 445 African American cases, 1,756 African American controls, 173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	19q13.2	IFNL3, IFNL4	rs74597329-T	0.37	6E-50		2.14	NR (AA)	Illumina [15704341] (imputed)	N
888	chr19	39739154	39739155	rs74597329	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	445 African American cases, 1,756 African American controls	NA	19q13.2	IFNL4, IFNL3	rs74597329-T	0.37	1E-15		2.14	NR	Illumina [at least 15383342] (imputed)	N
888	chr19	39739154	39739155	rs74597329	30593799	Vergara C	2018-12-26	Gastroenterology	Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.	Hepatitis C (spontaneous viral clearance)	173 Hispanic ancestry cases, 313 Hispanic ancestry controls	NA	19q13.2	IFNL3, IFNL4	rs74597329-T	0.58	3E-12		3.28	NR	Illumina [12650831] (imputed)	N
888	chr19	39740674	39740675	rs66531907	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	19q13.2	IFNL4	rs66531907-A	0.21	6E-8		1.23	[1.14-1.33]	Illumina [at least 560000] (imputed)	N
888	chr19	39741123	39741124	rs12983038	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	19q13.2	Intergenic	rs12983038-G	0.8091	2E-8		0.0161	[0.01-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
888	chr19	39743102	39743103	rs8113007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic hepatitis C infection	273 European ancestry cases, 351,740 European ancestry controls, 7,110 East Asian ancestry cases, 169,588 East Asian ancestry controls	NA	19q13.2		rs8113007-T	NR	5E-22		0.2709	[0.22-0.33] unit increase	Affymetrix, Illumina [20457788] (imputed)	N
888	chr19	39743102	39743103	rs8113007	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic hepatitis C infection	5,794 Japanese ancestry cases, 206,659 Japanese ancestry controls	NA	19q13.2		rs8113007-T	0.104228627	7E-28		1.4280615	[1.339831592-1.522101518]	Illumina [8919992] (imputed)	N
888	chr19	39743164	39743165	rs8099917	21228123	Ochi H	2011-01-12	J Gen Virol	IL-28B predicts response to chronic hepatitis C therapy--fine-mapping and replication study in Asian populations.	Response to hepatitis C treatment	2,101 East Asian ancestry cases, 282 Japanese ancestry controls	NA	19q13.2	IL28B	rs8099917-G	0.083	1E-20		3.0	[2.4-3.8]	Illumina [510537]	N
888	chr19	39743164	39743165	rs8099917	20060832	Rauch A	2010-01-07	Gastroenterology	Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study.	Chronic hepatitis C infection	1,015 European ancestry chronic HCV carriers, 347 European ancestry spontaneously cleared HCV individuals	NA	19q13.2	IL29, IL28B, IL28A	rs8099917-G	0.24	6E-9		2.31	[1.74-3.06]	Illumina [~ 500000]	N
888	chr19	39743164	39743165	rs8099917	19749758	Suppiah V	2009-09-13	Nat Genet	IL28B is associated with response to chronic hepatitis C interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	131 European ancestry responders, 162 European ancestry non-responders	261 European ancestry responders, 294 European ancestry non-responders	19q13.2	IL28A, IL28B	rs8099917-G	NR	9E-9		1.98	[1.57-2.52]	Illumina [311159]	N
888	chr19	39743164	39743165	rs8099917	19749757	Tanaka Y	2009-09-13	Nat Genet	Genome-wide association of IL28B with response to pegylated interferon-alpha and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	64 Japanese ancestry responders, 78 Japanese ancestry non-responders	122 Japanese ancestry responders, 50 Japanese ancestry non-responders	19q13.2	IL28B	rs8099917-G	0.12	3E-32		27.1	[14.6-50.3]	Affymetrix [621220]	N
888	chr19	39744806	39744808	rs10612351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	19q13.2		rs10612351-G	NR	2E-10		0.2749	[0.19-0.36] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
888	chr19	39745057	39745058	rs73050457	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	19q13.2	IFNL4, IFNL2	rs73050457-T	0.1	6E-6		0.32	unit decrease	Illumina [5600000] (imputed)	N
888	chr19	39768215	39768216	rs11665818	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	19q13.2	IFNL2	rs11665818-A	0.194645	7E-6		0.02775	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
888	chr19	39784793	39784794	rs199597369	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	19q13.2	NR	rs199597369-AC	NR	7E-6		0.3621	[0.2-0.52] SD units increase	NR [10700000] (imputed)	N
888	chr19	39813852	39813853	rs8108034	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.2	LRFN1, GMFG	rs8108034-G	0.098770912	4E-6		1.1390146	[1.078067821-1.203406926]	Illumina [10439017] (imputed)	N
888	chr19	39842731	39842732	rs773561743	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.2	SAMD4B	rs773561743-?		2E-12		0.8623	[0.62-1.1] unit decrease	Illumina [31500000] (imputed)	N
889	chr19	39849788	39849789	rs562638	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.2	SAMD4B	rs562638-G	0.117	6E-6	(Sedentary&light activity )	0.02	[NR] min/d increase	Illumina [899892]	N
889	chr19	39873857	39873858	rs140996761	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	19q13.2	NR	rs140996761-G		7E-6		0.2986	[0.17-0.43] SD units increase	NR [10700000] (imputed)	N
889	chr19	39888510	39888511	rs3746082	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	19q13.2	NR	rs3746082-G	NR	5E-7		0.322	[0.2-0.45] SD units increase	NR [10700000] (imputed)	N
889	chr19	39919537	39919538	rs251857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.2		rs251857-C	NR	1E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
889	chr19	39929340	39929341	rs11318685	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.2	SUPT5H	rs11318685-C	0.555934	1E-13		0.016714513	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr19	39936016	39936017	rs1865092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.2		rs1865092-A	NR	3E-10		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
889	chr19	39940650	39940651	rs12609112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.2	NR	rs12609112-T	0.520068	9E-16		0.015469	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
889	chr19	39942568	39942569	rs8107194	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.2		rs8107194-?	NR	3E-10				NR [~ 8900000] (imputed)	N
889	chr19	39946826	39946827	rs10424217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs10424217-A	0.498629	9E-14				Affymetrix, Illumina [24649327] (imputed)	N
889	chr19	39946826	39946827	rs10424217	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs10424217-A	0.502337	7E-15				Affymetrix, Illumina [23114412] (imputed)	N
889	chr19	39953175	39953176	rs10404004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.2	SUPT5H	rs10404004-T	0.392588	1E-12		0.016397735	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr19	39953175	39953176	rs10404004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.2	NR	rs10404004-T	0.396975	9E-15		0.015755	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
889	chr19	39963414	39963415	rs74921826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs74921826-?	NR	1E-8				NR [~ 8900000] (imputed)	N
890	chr19	40016413	40016414	rs549331938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uveitis	2,616 European ancestry cases, 478,126 European ancestry controls, 125 East Asian ancestry cases, 174,600 East Asian ancestry controls	NA	19q13.2		rs549331938-G	NR	7E-9		1.1467	[0.76-1.53] unit increase	Affymetrix, Illumina [25844095] (imputed)	N
890	chr19	40016413	40016414	rs549331938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iritis	2,616 European ancestry cases, 478,126 European ancestry controls, 110 East Asian ancestry cases, 175,543 East Asian ancestry controls	NA	19q13.2		rs549331938-G	NR	7E-9		1.1467	[0.76-1.53] unit increase	Affymetrix, Illumina [25844196] (imputed)	N
891	chr19	40170052	40170053	rs8103033	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.2	LGALS17A	rs8103033-G	0.458	8E-6	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
891	chr19	40202415	40202416	rs10410864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.2	LGALS14	rs10410864-C	0.6686	1E-44		0.05291358	[0.046-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
891	chr19	40219448	40219449	rs412884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.2		rs412884-C	NR	7E-97		0.036	[0.033-0.039] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
891	chr19	40219448	40219449	rs412884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.2	CLC	rs412884-C	0.672003	3E-129		0.056938693	[0.052-0.062] unit increase	Affymetrix [93095623] (imputed)	N
891	chr19	40219448	40219449	rs412884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.2	CLC	rs412884-C	0.672001	9E-134		0.057902224	[0.053-0.063] unit increase	Affymetrix [93095623] (imputed)	N
891	chr19	40219448	40219449	rs412884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs412884-C	0.635719	1E-175				Affymetrix, Illumina [19872809] (imputed)	N
891	chr19	40219448	40219449	rs412884	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.2	NR	rs412884-C	0.672171	2E-164		0.057634	[0.054-0.062] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
891	chr19	40219448	40219449	rs412884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs412884-?	NR	7E-137				NR [~ 8900000] (imputed)	N
891	chr19	40219887	40219888	rs418664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs418664-G	0.663426	2E-12				Affymetrix, Illumina [19905671] (imputed)	N
891	chr19	40221106	40221107	rs431329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.2	CLC	rs431329-G	0.662603	4E-18		0.020366436	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
891	chr19	40221106	40221107	rs431329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.2	CLC	rs431329-G	0.662589	4E-13		0.017043928	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
891	chr19	40222800	40222801	rs12977184	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19q13.2		rs12977184-A	0.332	1E-40				Affymetrix [10369434] (imputed)	N
891	chr19	40223578	40223579	rs7249415	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	19q13.2	CLC	rs7249415-?	NR	1E-12		0.04294	[0.031-0.055] unit increase novel	Illumina [6108953] (imputed)	N
891	chr19	40223883	40223884	rs7253094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.2	NR	rs7253094-C	0.671446	6E-12		0.015638	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
891	chr19	40225030	40225031	rs146776010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	19q13.2	CLC	rs146776010-C	0.00628300000000004	3E-11		0.09316432	[0.066-0.121] unit increase	Affymetrix [93095623] (imputed)	N
891	chr19	40226129	40226130	rs372902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	19q13.2	NR	rs372902-C	0.5783	6E-15		0.037971	[0.028-0.047] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
891	chr19	40226274	40226275	rs395892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19q13.2	CLC	rs395892-G	0.6706	4E-53		0.05806571	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
891	chr19	40226274	40226275	rs395892	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.2	CLC	rs395892-G	0.6705	6E-58		0.06079871	[0.053-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
891	chr19	40227362	40227363	rs385240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.2	CLC	rs385240-T	0.6709	2E-33		0.0459629	[0.038-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
891	chr19	40227362	40227363	rs385240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19q13.2	CLC	rs385240-T	0.671	2E-47		0.05513136	[0.048-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
891	chr19	40228349	40228350	rs364911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	19q13.2		rs364911-C	0.422737	3E-17		0.0379692	[0.029-0.047] unit increase	Illumina [13470073] (imputed)	N
891	chr19	40229408	40229409	rs12611334	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	19q13.2	LGALS17A, CLC	rs12611334-G	0.70	2E-6	(EA)	1.4	[NR]	NR [1085772] (imputed)	N
892	chr19	40310083	40310084	rs4803297	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	19q13.2	LEUTX, DYRK1B	rs4803297-?	NR	5E-17		0.556	[0.42-0.69] unit increase	Affymetrix [11100000] (imputed)	N
892	chr19	40343128	40343129	rs10048489	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.2	FCGBP	rs10048489-?	NR	2E-6	(TAG 56:6)	0.34971613	[0.21-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
892	chr19	40362773	40362774	rs145591797	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19q13.2	FCGBP	rs145591797-A	0.351	5E-11		0.05682		Illumina [243345]	N
893	chr19	40418144	40418145	rs188575585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.2		rs188575585-?	NR	5E-9				NR [~ 8900000] (imputed)	N
895	chr19	40654398	40654399	rs6417145	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1777 sp900319275 abundance in stool	5,959 Finnish ancestry individuals	NA	19q13.2		rs6417145-C	0.0126518	1E-8		0.143688	[0.094-0.193] unit increase	Illumina [7980478] (imputed)	N
895	chr19	40706361	40706362	rs60568017	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (smell)	367 Japanese ancestry female cases, 5,367 Japanese ancestry female controls	392 Japanese ancestry female cases, 5,222 Japanese ancestry female controls	19q13.2	NR	rs60568017-A	0.212312752	5E-6		0.32498005	[0.19-0.46] unit decrease	Affymetrix [536506]	N
895	chr19	40719075	40719076	rs1129156	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	19q13.2	NR	rs1129156-T	0.26	3E-8		0.02	[0.012-0.028] z score increase	Affymetrix [up to 10400000] (imputed)	N
895	chr19	40719075	40719076	rs1129156	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.2	MAP3K10, AKT2	rs1129156-T	0.268449	3E-9		0.017352	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
895	chr19	40728035	40728036	rs4239504	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.2	NR	rs4239504-C	0.270851	9E-13		0.015521	[0.011-0.02] unit increase	NR [NR]	N
895	chr19	40732459	40732460	rs200091528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.2	NR	rs200091528-T	NR	1E-10		0.1106	[0.077-0.144] unit increase	Affymetrix [9000000] (imputed)	N
895	chr19	40732459	40732460	rs200091528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.2	NR	rs200091528-T	NR	4E-11		0.1134	[0.08-0.147] unit decrease	Affymetrix [9000000] (imputed)	N
895	chr19	40760448	40760449	rs9710247	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19q13.2	AKT2	rs9710247-G	0.447	8E-7	(EA, initial)	0.252	[0.15-0.35] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
895	chr19	40760448	40760449	rs9710247	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	19q13.2	AKT2	rs9710247-G	0.447	2E-9		0.164	[0.11-0.22] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
896	chr19	40780748	40780749	rs11665880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs11665880-C	0.0556947	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
896	chr19	40783727	40783728	rs73933237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.2	AKT2	rs73933237-T	0.0680269999999999	8E-12		0.02987331	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
896	chr19	40783831	40783832	rs76137255	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19q13.2	AKT2	rs76137255-T	0.02	2E-6		0.3749	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
896	chr19	40783831	40783832	rs76137255	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19q13.2	AKT2	rs76137255-T	0.02	2E-7		0.3236	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
896	chr19	40798367	40798368	rs182249602	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	19q13.2	AKT2	rs182249602-T	0.0019	8E-6		0.7224	[0.41-1.04] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
896	chr19	40800287	40800288	rs10418932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.2	NR	rs10418932-C	NR	6E-10		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
896	chr19	40800287	40800288	rs10418932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.2	NR	rs10418932-C	NR	3E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
896	chr19	40800880	40800881	rs2163840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.2		rs2163840-T	NR	3E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
896	chr19	40809438	40809439	rs35090721	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.2	RNU6-945P	rs35090721-T	0.06739	1E-9		0.026829151	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
896	chr19	40816961	40816962	rs67587726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.2	NR	rs67587726-C	0.068631	7E-14		0.028128	[0.021-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
896	chr19	40833469	40833470	rs16974196	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	19q13.2	C19orf47, MAP3K10	rs16974196-A	0.32	1E-11		0.2436	[0.17-0.31] unit increase	Affymetrix [19941912] (imputed)	N
896	chr19	40836871	40836872	rs11668242	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19q13.2	NR	rs11668242-A	0.2942	5E-7		0.0099	[0.006-0.0138] unit decrease	NR [~ 27400000] (imputed)	N
896	chr19	40848144	40848145	rs8104162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.2		rs8104162-?	NR	2E-8				NR [~ 8900000] (imputed)	N
896	chr19	40850246	40850247	rs12609706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.2	C19orf47	rs12609706-G	0.680137	2E-10		0.015308725	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
896	chr19	40854431	40854432	rs11667768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.2		rs11667768-T	NR	7E-9		0.0275	[0.018-0.037] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
896	chr19	40888206	40888207	rs4803331	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs4803331-?	NR	3E-9				NR [~ 8900000] (imputed)	N
897	chr19	40913538	40913539	rs16974263	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (recurrent)	702 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	19q13.2	PLD3, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB	rs16974263-A	0.094	1E-7		1.64	1.36-1.96	Illumina [319683]	N
897	chr19	40913538	40913539	rs16974263	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media (chronic)	512 Finnish ancestry child cases, 2,073 Finnish ancestry controls	1,466 child cases, 3,394 controls	19q13.2	HIPK4, PRX, SERTAD1, PLD3, SERTAD3, BLVRB	rs16974263-A	0.094	3E-8	(Finnish)	1.75	1.43-2.14	Illumina [319683]	N
897	chr19	40913538	40913539	rs16974263	27632927	Einarsdottir E	2016-09-16	Sci Rep	Genome-wide association analysis reveals variants on chromosome 19 that contribute to childhood risk of chronic otitis media with effusion.	Otitis media	803 Finnish ancestry child cases, 2,073 Finnish ancestry controls	NA	19q13.2	PLD3, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB	rs16974263-A	0.094	2E-7		1.59	1.33-1.89	Illumina [319683]	N
897	chr19	40925981	40925982	rs4803336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs4803336-T	0.16326	6E-11				Affymetrix, Illumina [24649327] (imputed)	N
897	chr19	40932075	40932076	rs12978327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.2	SERTAD1	rs12978327-C	0.186844	8E-18		0.024554722	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40932075	40932076	rs12978327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.2	NR	rs12978327-C	0.18432	3E-12		0.016901	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
897	chr19	40932075	40932076	rs12978327	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.2	NR	rs12978327-C	0.184876	6E-11		0.016524	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
897	chr19	40941497	40941498	rs2368577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.2		rs2368577-T	0.155656	2E-12		0.021497915	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40941497	40941498	rs2368577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.2		rs2368577-T	0.155652	5E-11		0.020036913	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr19	40948067	40948068	rs184723794	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.2	SERTAD3	rs184723794-G	0.010399	1E-11		0.078452595	[0.056-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	3E-18		0.111137	[0.086-0.136] unit increase	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	6E-13		0.0895458	[0.065-0.114] unit decrease	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	1E-17		0.107265	[0.082-0.133] unit increase	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	1E-27		0.132579	[0.11-0.16] unit increase	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	3E-12		0.0842615	[0.059-0.109] unit decrease	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	19q13.2		rs149698066-?	NR	6E-16		0.0937765	[0.07-0.117] unit increase	NR [9800000] (imputed)	N
897	chr19	40964063	40964064	rs149698066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.2	BLVRB	rs149698066-A	0.00575000000000003	9E-14		0.12278315	[0.091-0.155] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40964063	40964064	rs149698066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.2	BLVRB	rs149698066-A	0.00575099999999995	5E-15		0.12903264	[0.097-0.161] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40964063	40964064	rs149698066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.2	BLVRB	rs149698066-A	0.00575000000000003	2E-13		0.12044967	[0.088-0.153] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40964063	40964064	rs149698066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.2	BLVRB	rs149698066-A	0.00575400000000004	7E-18		0.14083433	[0.11-0.17] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40964063	40964064	rs149698066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.2	BLVRB	rs149698066-A	0.00575499999999996	2E-19		0.14739068	[0.12-0.18] unit increase	Affymetrix [93095623] (imputed)	N
897	chr19	40973361	40973362	rs45572933	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.2	NR	rs45572933-?	NR	1E-9		6.08	NR z score increase	Illumina [at least 830937] (imputed)	N
897	chr19	40986302	40986303	rs7260380	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.2	NR	rs7260380-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
897	chr19	41015964	41015965	rs6508941	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	19q13.2	SPTBN4	rs6508941-T	0.217	8E-7	(Influenza A)	0.26	[NR] unit increase	Illumina [944565]	N
898	chr19	41047359	41047360	rs12982298	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.2	SPTBN4	rs12982298-T	0.3398	6E-19		0.1862	[0.15-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
898	chr19	41067069	41067070	rs75413803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q13.2		rs75413803-A	NR	2E-12		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
898	chr19	41080813	41080814	rs843778	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.2	NR	rs843778-G	0.413	3E-8		0.00620758	[0.004-0.0084] unit decrease	NR [9732723] (imputed)	N
898	chr19	41084692	41084693	rs814518	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional smoking interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	19q13.2	SHKBP1	rs814518-?	NR	5E-6	(EA)	3.35	[2.00-5.62]	NR [341191]	N
898	chr19	41087490	41087491	rs710160	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	19q13.2	NR	rs710160-?	NR	6E-7	(EA)			Illumina [1735619]	N
898	chr19	41087490	41087491	rs710160	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	19q13.2	NR	rs710160-?	NR	5E-8				Illumina [1735619]	N
898	chr19	41087816	41087817	rs418007	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.2	SHKBP1, SPTBN4	rs418007-C		1E-10		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
898	chr19	41089531	41089532	rs114936133	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	19q13.2		rs114936133-?	NR	8E-9		0.35021	[0.24-0.46] unit decrease	NR [9800000] (imputed)	N
898	chr19	41090189	41090190	rs410101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19q13.2		rs410101-T	NR	7E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
898	chr19	41095299	41095300	rs76000727	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.2	Intergenic	rs76000727-A	0.0885	1E-8	(MTAG)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
898	chr19	41095299	41095300	rs76000727	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q13.2	Intergenic	rs76000727-A	0.089	3E-8	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
898	chr19	41095299	41095300	rs76000727	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	19q13.2	Intergenic	rs76000727-G	0.911	6E-9		0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
898	chr19	41108974	41108975	rs10410606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19q13.2		rs10410606-?	NR	9E-22				NR [~ 8900000] (imputed)	N
898	chr19	41117299	41117300	rs34093919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.2	LTBP4	rs34093919-A	0.0121	3E-13		0.0632	[0.046-0.08] unit decrease	Affymetrix [18391927] (imputed)	N
898	chr19	41117299	41117300	rs34093919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	19q13.2	LTBP4	rs34093919-A	0.012	2E-7		0.06	[0.036-0.084] unit decrease	Affymetrix [18391927] (imputed)	N
898	chr19	41117299	41117300	rs34093919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	19q13.2	LTBP4	rs34093919-A	0.012	8E-7		0.06	[0.035-0.085] unit decrease	Affymetrix [18391927] (imputed)	N
898	chr19	41117299	41117300	rs34093919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.2	NR	rs34093919-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
898	chr19	41117299	41117300	rs34093919	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	19q13.2	LTBP4	rs34093919-A	0.0128	4E-10		0.0714	[0.049-0.094] unit increase	Affymetrix [19819130] (imputed)	N
898	chr19	41117299	41117300	rs34093919	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	19q13.2	LTBP4	rs34093919-A	0.0128	4E-7		0.0532	[0.033-0.074] unit decrease	Affymetrix [19819130] (imputed)	N
898	chr19	41117299	41117300	rs34093919	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	19q13.2	LTBP4	rs34093919-A	0.0128	2E-47		0.1535	[0.13-0.17] unit increase	Affymetrix [19819130] (imputed)	N
898	chr19	41117299	41117300	rs34093919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.2		rs34093919-?	NR	4E-48				NR [~ 8900000] (imputed)	N
898	chr19	41117299	41117300	rs34093919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs34093919-?	NR	1E-23				NR [~ 8900000] (imputed)	N
898	chr19	41123303	41123304	rs141724981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.2	NR	rs141724981-G	0.059228	3E-10		0.026973	[0.019-0.035] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
898	chr19	41124154	41124155	rs113473882	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	19q13.2	LTBP4	rs113473882-T	NR	1E-12	(adults)	0.153	[0.11-0.19] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
898	chr19	41132021	41132022	rs2278243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	LTBP4	rs2278243-G	0.17315	4E-11		0.0195213	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
898	chr19	41132021	41132022	rs2278243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	LTBP4	rs2278243-G	0.173148	5E-13		0.02133379	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
898	chr19	41133843	41133844	rs41512448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	LTBP4	rs41512448-C	0.17322	1E-11		0.019891882	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
898	chr19	41139610	41139611	rs151201760	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	19q13.2	NR	rs151201760-G	0.0	4E-6		1.010101	[-1.0479-3.0681]	Affymetrix [at least 143006] (imputed)	N
898	chr19	41141433	41141434	rs7254268	31269844	Wu NN	2019-07-03	J Matern Fetal Neonatal Med	A genome-wide association study of gestational diabetes mellitus in Chinese women.	Diabetes (gestational)	103 Han Chinese ancestry cases, 115 Han Chinese ancestry controls		19q13.2	intergenic	rs7254268-A	0.213	7E-6		2.595	[NR]	Illumina [65535]	N
898	chr19	41147696	41147697	rs2561566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.2		rs2561566-?	NR	2E-15				NR [~ 8900000] (imputed)	N
898	chr19	41148796	41148797	rs10408947	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.2	NR	rs10408947-?	NR	9E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
898	chr19	41150921	41150922	rs2604861	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.2	NR	rs2604861-?	NR	3E-10	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
899	chr19	41161572	41161573	rs2042936	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	934 European ancestry individuals	NA	19q13.2	NR	rs2042936-?		1E-6				Illumina [4278941] (imputed)	N
899	chr19	41165251	41165252	rs7259265	33610756	Gao H	2021-02-18	Mitochondrion	A Genome-Wide Association Study in Human Lymphoblastoid Cells Supports Safety of Mitochondrial Complex I Inhibitor.	tricyclic pyrone compound response (IC50)	36 African American lymphoblastoid cell lines, 84 European ancestry lymphoblastoid cell lines, 76 Han Chinese ancestry lymphoblastoid cell lines	NA	19q13.2	NUMBL	rs7259265-?	NR	4E-7				Affymetrix, Illumina [1184972]	N
899	chr19	41177279	41177280	rs780340856	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.2	NR	rs780340856-?	NR	3E-9	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
899	chr19	41187336	41187337	rs2561544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs2561544-C	NR	9E-10		0.032	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
899	chr19	41188077	41188078	rs141799618	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	19q13.2	Intergenic	rs141799618-G	0.06	1E-6		0.44	[0.26-0.62] unit increase	NR [~ 38000000] (imputed)	N
899	chr19	41188984	41188985	rs113228202	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	19q13.2	NR	rs113228202-G	0.99	8E-8		0.036	[0.022-0.05] unit decrease	NR [NR] (imputed)	N
899	chr19	41191392	41191393	rs13343737	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	19q13.2	NR	rs13343737-?		3E-6				Illumina [892589]	N
899	chr19	41195169	41195170	rs66500423	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	19q13.2	NUMBL	rs66500423-C	0.302766475	2E-7		1.0678405	[1.041643246-1.094696601]	Illumina [10439017] (imputed)	N
899	chr19	41195169	41195170	rs66500423	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.2	NUMBL	rs66500423-C	0.298701274	7E-6		1.0815878	[1.045124655-1.119323046]	Illumina [10439017] (imputed)	N
899	chr19	41195169	41195170	rs66500423	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs66500423-T	0.67	6E-9		5.83	Z-score increase	Illumina [~ 31000000] (imputed)	N
899	chr19	41197268	41197268	rs35255138	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	19q13.2	NR	rs35255138-?	NR	1E-11	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
899	chr19	41209176	41209177	rs2288450	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	19q13.2		rs2288450-T	NR	6E-11		0.7931689	[0.739902567869349-0.85026990042415]	Illumina [8919992] (imputed)	N
899	chr19	41214795	41214796	rs4803358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.2		rs4803358-?	NR	4E-9				NR [~ 8900000] (imputed)	N
899	chr19	41224203	41224204	rs28493229	22081228	Khor CC	2011-11-13	Nat Genet	Genome-wide association study identifies FCGR2A as a susceptibility locus for Kawasaki disease.	Kawasaki disease	405 European ancestry cases, 6,252 European ancestry controls	605 European ancestry cases and 1,349 European ancestry controls from 740 families, 135 cases and 270 controls from 135 families, 1,028 East Asian ancestry cases, 1,512 East Asian ancestry controls	19q13.2	ITPKC, MIA, RAB4B	rs28493229-?	0.13	2E-12		1.52	[1.35-1.70]	Illumina [494236]	N
899	chr19	41224313	41224314	rs2561530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs2561530-?	NR	3E-12				NR [~ 8900000] (imputed)	N
899	chr19	41229058	41229059	rs191170764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19q13.2		rs191170764-T	0.002958	1E-10		0.200078	[0.14-0.26] unit decrease	Illumina [13479135] (imputed)	N
899	chr19	41229058	41229059	rs191170764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	19q13.2		rs191170764-T	0.00289	1E-11		0.210257	[0.15-0.27] unit decrease	Illumina [13478948] (imputed)	N
899	chr19	41248008	41248009	rs3745213	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Kawasaki disease	400 European ancestry cases, 6,101 European ancestry controls	346 European ancestry cases, 1,609 European ancestry controls	19q13.2	ITPKC	rs3745213-T	0.132	1E-9	(EA)	1.6	[1.4-1.9]	Illumina [5784964] (imputed)	N
899	chr19	41255499	41255500	rs2254343	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs2254343-G	NR	2E-17		0.0227	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
899	chr19	41257045	41257046	rs1455434	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	C19orf54, MIA, ADCK4, RNU6-195P, ITPKC, SNRPA, MIA-RAB4B, RAB4B, RAB4B-EGLN2	rs1455434-T	0.04518072	2E-28	(Melanoma-derived growth regulatory protein)	1.111	[0.92-1.3] unit increase	Affymetrix [509946]	N
899	chr19	41263402	41263403	rs2230694	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	NR	rs2230694-?	NR	1E-68	(EA, Melanoma-derived growth regulatory protein)			Affymetrix [509946]	N
899	chr19	41263402	41263403	rs2230694	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	melanoma-derived growth regulatory protein levels	up to 653 individuals	up to 317 individuals	19q13.2	SNRPA	rs2230694-G	0.10927	7E-17		0.66	[0.51-0.81] unit increase	Illumina [4840842] (imputed)	N
899	chr19	41266478	41266479	rs11665867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.2	SNRPA	rs11665867-G	0.1608	4E-9		0.02840244	[0.019-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
899	chr19	41267072	41267073	rs116980959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs116980959-C	NR	7E-12		0.0676	[0.048-0.087] unit increase	Affymetrix [9000000] (imputed)	N
899	chr19	41268242	41268243	rs2607412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MIA	5,366 Icelandic ancestry individuals	NA	19q13.2		rs2607412-G	0.06913	6E-302		1.20229	[1.14-1.27] unit increase	Illumina [7506463] (imputed)	N
899	chr19	41269287	41269288	rs2279011	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	SNRPA	rs2279011-T	0.554	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
899	chr19	41273698	41273699	rs7254192	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs7254192-A	0.461	1E-6		0.045	NR unit decrease	Illumina [NR] (imputed)	N
899	chr19	41274712	41274713	rs2607426	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19q13.2	NR	rs2607426-?	NR	4E-34	(MIA)	0.49	[0.41-0.57] unit increase	Illumina [4020654] (imputed)	N
899	chr19	41274712	41274713	rs2607426	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	NR	rs2607426-?	NR	1E-69	(EA, Melanoma-derived growth regulatory protein)			Affymetrix [509946]	N
899	chr19	41275047	41275048	rs2604877	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	MIA	rs2604877-C	0.068	3E-253	(Melanoma-derived growth regulatory protein, MIA.2687.2.1)	1.44	[1.36-1.52] unit increase	Affymetrix [10572788] (imputed)	N
899	chr19	41276885	41276886	rs11672227	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.2	MIA	rs11672227-C	0.838018	1E-22		0.00300468	[0.0024-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
899	chr19	41281015	41281016	rs2233152	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	19q13.2	NUMBL, MIA	rs2233152-A	0.158	4E-10		1.52	[1.28-1.81]	Illumina [463793]	N
899	chr19	41281345	41281346	rs2233154	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	MIA	rs2233154-C	0.93	1E-164	(MIA, 2687_2_1)	1.2043879	[1.12-1.29] unit decrease	Illumina [> 1000000] (imputed)	N
899	chr19	41281345	41281346	rs2233154	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	NR	rs2233154-?	NR	2E-69	(EA, Melanoma-derived growth regulatory protein)			Affymetrix [509946]	N
899	chr19	41283364	41283365	rs2233159	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	NR	rs2233159-?	NR	1E-69	(EA, Melanoma-derived growth regulatory protein)			Affymetrix [509946]	N
899	chr19	41283364	41283365	rs2233159	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	melanoma-derived growth regulatory protein levels	up to 653 individuals	up to 317 individuals	19q13.2	MIA	rs2233159-C	0.10902	1E-16		0.65	[0.5-0.8] unit decrease	Illumina [4840842] (imputed)	N
899	chr19	41284397	41284398	rs2279699	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	19q13.2	NR	rs2279699-?	NR	2E-26	(MIA)	0.838607	[0.68-0.99] unit increase	Illumina [11901634] (imputed)	N
900	chr19	41289396	41289397	rs12973666	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs12973666-C	0.463	2E-6		0.043	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41291118	41291119	rs17726276	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	NR	rs17726276-A	0.495	1E-52	(Melanoma-derived growth regulatory protein, MIA.2687.2.1)	0.36	[0.32-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
900	chr19	41291118	41291119	rs17726276	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs17726276-A	0.462	2E-6		0.044	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41292403	41292404	rs2604894	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MIA	5,366 Icelandic ancestry individuals	NA	19q13.2		rs2604894-A	0.4587	9E-26		0.18971	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
900	chr19	41292403	41292404	rs2604894	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	19q13.2	EGLN2	rs2604894-A	0.45	6E-9			[NR]	Affymetrix [9886854] (imputed)	N
900	chr19	41292403	41292404	rs2604894	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	19q13.2	EGLN2	rs2604894-A	0.45	8E-8		0.86	[0.81-0.91]	Affymetrix [9886854] (imputed)	N
900	chr19	41292403	41292404	rs2604894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.2		rs2604894-?	NR	2E-10				NR [~ 8900000] (imputed)	N
900	chr19	41296116	41296117	rs2604911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, RAB4B	rs2604911-G	0.209015	4E-11		0.018005209	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41297105	41297106	rs73047068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, RAB4B	rs73047068-C	0.16249	3E-11		0.020151623	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41297105	41297106	rs73047068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, RAB4B	rs73047068-C	0.162483	3E-12		0.021252278	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41297614	41297615	rs2604909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs2604909-?	NR	4E-9				NR [~ 8900000] (imputed)	N
900	chr19	41299065	41299066	rs73047073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs73047073-T	NR	4E-18		0.0284	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
900	chr19	41299065	41299066	rs73047073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, RAB4B	rs73047073-T	0.161167	3E-13		0.022083579	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41302705	41302706	rs7937	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	19q13.2	RAB4B	rs7937-T	0.56	6E-8		1.06	[1.016-1.106] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
900	chr19	41302705	41302706	rs7937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs7937-T	0.39	2E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
900	chr19	41302705	41302706	rs7937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs7937-T	0.392	7E-7		0.044	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41302705	41302706	rs7937	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	19q13.2	MIA, RAB4B	rs7937-T	NR	2E-6	(%LAA-950, All)	0.08	[0.049-0.111] unit decrease	Illumina [7600000] (imputed)	N
900	chr19	41302705	41302706	rs7937	22080838	Cho MH	2011-11-11	Hum Mol Genet	A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13.	Chronic obstructive pulmonary disease	3,499 European ancestry cases, 1,922 European ancestry controls	983 cases, 1,876 sibling controls	19q13.2	RAB4B, EGLN2, CYP2A6	rs7937-?	NR	3E-9		1.37	[1.20-1.59]	Illumina [797983]	N
900	chr19	41302948	41302949	rs2644899	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs2644899-T	0.744	2E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
900	chr19	41305064	41305065	rs192191487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, EGLN2	rs192191487-A	0.019065	4E-9		0.053886805	[0.036-0.072] unit increase	Affymetrix [93095623] (imputed)	N
900	chr19	41305064	41305065	rs192191487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, EGLN2	rs192191487-A	0.019053	4E-14		0.06943509	[0.051-0.087] unit increase	Affymetrix [93095623] (imputed)	N
900	chr19	41305064	41305065	rs192191487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	RAB4B-EGLN2, EGLN2	rs192191487-A	0.0190630000000001	3E-12		0.063949935	[0.046-0.082] unit increase	Affymetrix [93095623] (imputed)	N
900	chr19	41305137	41305138	rs184088518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.2		rs184088518-T	NR	5E-28		0.0767	[0.063-0.09] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
900	chr19	41305137	41305138	rs184088518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.2		rs184088518-T	NR	3E-42		0.0883	[0.076-0.101] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
900	chr19	41305137	41305138	rs184088518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.2		rs184088518-T	NR	6E-40		0.0881	[0.075-0.101] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	EGLN2	rs184088518-T	0.023693	2E-39		0.099271156	[0.084-0.114] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	EGLN2	rs184088518-T	0.0236960000000001	7E-56		0.119377084	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	EGLN2	rs184088518-T	0.023687	4E-55		0.1184709	[0.1-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.0216824	9E-47				Affymetrix, Illumina [24332387] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.02251	2E-49		0.096486	[0.084-0.109] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.0217723	8E-62				Affymetrix, Illumina [24653286] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.022571	4E-65		0.110859	[0.098-0.124] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.02176	6E-65				Affymetrix, Illumina [24558453] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.2	NR	rs184088518-T	0.02256	3E-68		0.113867	[0.1-0.13] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
900	chr19	41305137	41305138	rs184088518	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.2	EGLN2	rs184088518-T		1E-41		0.104	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
900	chr19	41305137	41305138	rs184088518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.2		rs184088518-?	NR	1E-45				NR [~ 8900000] (imputed)	N
900	chr19	41305137	41305138	rs184088518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.2	EGLN2	rs184088518-T	0.0237	4E-16		0.1005758	[0.076-0.125] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41306649	41306650	rs61750953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	EGLN2	rs61750953-T	0.015398	9E-16		0.072101705	[0.055-0.09] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41306649	41306650	rs61750953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	EGLN2	rs61750953-T	0.015398	5E-25		0.093024544	[0.075-0.111] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41306649	41306650	rs61750953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	EGLN2	rs61750953-T	0.0154	2E-24		0.09163702	[0.074-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr19	41306649	41306650	rs61750953	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.2	EGLN2	rs61750953-T	0.0154	1E-9		0.08824054	[0.06-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41306649	41306650	rs61750953	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.2	EGLN2	rs61750953-T	0.0154	6E-11		0.09388035	[0.066-0.122] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41307023	41307024	rs117916638	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	19q13.2		rs117916638-?	NR	1E-15		0.269798	[0.21-0.33] unit increase	NR [9800000] (imputed)	N
900	chr19	41307023	41307024	rs117916638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.2	EGLN2	rs117916638-A	9.63999999999965E-4	3E-16		0.29129696	[0.22-0.36] unit increase	Affymetrix [93095623] (imputed)	N
900	chr19	41307023	41307024	rs117916638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.2	EGLN2	rs117916638-A	9.63000000000047E-4	1E-16		0.2947077	[0.22-0.36] unit increase	Affymetrix [93095623] (imputed)	N
900	chr19	41309149	41309150	rs117391664	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs117391664-A	0.019	5E-6		0.159	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41309589	41309590	rs117851058	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs117851058-A	0.019	3E-6		0.161	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41310570	41310571	rs3733829	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	19q13.2	CYP2A6	rs3733829-A	0.61	3E-19		0.048	[0.038-0.058] unit decrease	Illumina [5961480] (imputed)	N
900	chr19	41310570	41310571	rs3733829	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	19q13.2	EGLN2	rs3733829-G	NR	2E-9		0.025	[0.015-0.035] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
900	chr19	41310570	41310571	rs3733829	20418890	Tobacco and Genetics Consortium	2010-04-25	Nat Genet	Genome-wide meta-analyses identify multiple loci associated with smoking behavior.	Smoking behavior	Up to 74,035 European ancestry individuals	Up to 68,988 participants	19q13.2	EGLN2, CYP2A6	rs3733829-G	0.36	1E-8	(CPD)	0.33	[0.22-0.44] CPD increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
900	chr19	41310887	41310888	rs117821847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs117821847-T	0.019	4E-6		0.159	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41311921	41311922	rs117139969	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs117139969-T	0.981	4E-6		0.159	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41313260	41313261	rs144553930	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	EGLN2	rs144553930-T	0.019	4E-6		0.16	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41314326	41314327	rs186950462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	19q13.2		rs186950462-G	0.004157	6E-11		0.176496	[0.12-0.23] unit decrease	Illumina [13478961] (imputed)	N
900	chr19	41315325	41315326	rs149812270	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	AK097370	rs149812270-A	0.981	4E-6		0.16	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41317178	41317179	rs185308415	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs185308415-G	NR	3E-9		0.3344	[0.22-0.44] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41317933	41317934	rs4803370	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs4803370-A	0.978	3E-6		0.166	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41321073	41321074	rs147893869	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs147893869-C	0.978	1E-6		0.165	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41321953	41321954	rs140878064	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs140878064-T	0.022	3E-6		0.167	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41323879	41323879	rs764772129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs764772129-CT	0.1771	1E-15		0.03969045	[0.03-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41324077	41324078	rs71358934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs71358934-A	0.3143	5E-11		0.02579586	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41324131	41324132	rs10414540	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	19q13.2	intergenic	rs10414540-C	NR	8E-6	(EA)			Illumina [up to 11995908] (imputed)	N
900	chr19	41324131	41324132	rs10414540	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	19q13.2	intergenic	rs10414540-C	NR	4E-6				Illumina [up to 11995908] (imputed)	N
900	chr19	41324179	41324180	rs2545770	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs2545770-A	NR	4E-11		0.2012	[0.14-0.26] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41325198	41325199	rs76478271	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19q13.2	RAB4B-EGLN2, CYP2A6	rs76478271-T	0.12	2E-6		0.3998	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
900	chr19	41325198	41325199	rs76478271	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal P-tau181p levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	19q13.2	RAB4B-EGLN2, CYP2A6	rs76478271-T	0.12	4E-7		0.3309	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
900	chr19	41326425	41326426	rs4803373	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs4803373-C	0.41	5E-12		6.9	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41326517	41326518	rs8100454	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.2	CTC-490E21.12, CYP2F2P	rs8100454-G	0.0375	5E-16		0.07585103	[0.058-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr19	41327296	41327297	rs577997457	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	NR	rs577997457-A	0.013	5E-43	(Melanoma-derived growth regulatory protein, MIA.2687.2.1)	1.64	[1.4-1.88] unit increase	Affymetrix [10572788] (imputed)	N
900	chr19	41328195	41328196	rs34842714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs34842714-T	NR	8E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
900	chr19	41330178	41330179	rs7507400	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs7507400-T	NR	4E-8		0.1679	[0.11-0.23] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41331208	41331209	rs111825958	28921760	Chenoweth MJ	2017-09-16	Addiction	Genome-wide association study of a nicotine metabolism biomarker in African American smokers: impact of chromosome 19 genetic influences.	Nicotine metabolite ratio in current smokers	954 African American individuals	480 African American individuals	19q13.2	EGLN2	rs111825958-A	NR	6E-26		0.71	[0.58-0.84] unit decrease	Illumina [at least 17919969] (imputed)	N
900	chr19	41332066	41332067	rs147400515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	19q13.2		rs147400515-A	0.173728	2E-17		0.0462359	[0.036-0.057] unit increase	Illumina [13474352] (imputed)	N
900	chr19	41332170	41332171	rs78011401	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs78011401-T	0.31	8E-9		5.78	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41333151	41333152	rs111689747	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	19q13.2	NR	rs111689747-G	0.99	4E-9		0.039	[0.025-0.053] unit decrease	NR [NR] (imputed)	N
900	chr19	41333151	41333152	rs111689747	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	19q13.2	CYP2A6, CYP2A7, CYP- 2G1PCYP2B7P, CYP2B6, SNRPA, MIA, EGLN2, RAB4B, MIA-RAB4B, RAB4B-EGLN2, C19ORF54, ITPKC, ADCK4, NUMBL, LTBP4, SHKBP1, SPTBN4	rs111689747-G	0.99	1E-10		0.044	[0.03-0.058] unit decrease	NR [NR] (imputed)	N
900	chr19	41333283	41333284	rs11878604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	19q13.2		rs11878604-C	0.394558582	6E-11		0.14735392	[0.1-0.19] unit decrease	Illumina [13429980] (imputed)	N
900	chr19	41333283	41333284	rs11878604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	19q13.2		rs11878604-C	NR	1E-13		0.1475	[0.11-0.19] unit decrease	Affymetrix, Illumina [25845450] (imputed)	N
900	chr19	41333283	41333284	rs11878604	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.2	EGLN2, CYP2A6	rs11878604-C	0.07	2E-29		11.2	z-score increase	Affymetrix [4311822] (imputed)	N
900	chr19	41333283	41333284	rs11878604	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19q13.2	EGLN2, CYP2A6	rs11878604-T	0.93	5E-17		8.39	z-score increase	Affymetrix [4312306] (imputed)	N
900	chr19	41333283	41333284	rs11878604	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	19q13.2		rs11878604-C	NR	6E-12		0.8355451	[0.793907059464358-0.879366931139989]	Illumina [8919992] (imputed)	N
900	chr19	41333283	41333284	rs11878604	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs11878604-T	0.92873	3E-9		0.0221996	[0.015-0.029] unit decrease	Affymetrix [NR] (imputed)	N
900	chr19	41333283	41333284	rs11878604	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs11878604-?	NR	2E-14		0.02958	[0.022-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
900	chr19	41333283	41333284	rs11878604	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs11878604-?	NR	7E-20		0.03573	[0.028-0.043] unit decrease	Illumina [6108953] (imputed)	N
900	chr19	41333283	41333284	rs11878604	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs11878604-C	NR	7E-24		0.276	[0.22-0.33] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41333440	41333441	rs4803378	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.2	CTC-490E21.10, CTC-490E21.12, CYP2F2P, CTC-490E21.11, CYP2A6, CYP2A7, CYP2G1P	rs4803378-A	0.01955868	3E-18	(EA, Melanoma-derived growth regulatory protein)	1.304	[1.02-1.59] unit increase	Affymetrix [509946]	N
900	chr19	41333725	41333726	rs116921376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	19q13.2		rs116921376-G	NR	1E-13		0.2402	[0.18-0.3] unit decrease	Affymetrix, Illumina [25843162] (imputed)	N
900	chr19	41338371	41338372	rs3852868	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.2	CYP2T1P, CYP2A6	rs3852868-?		8E-14		0.0315	[0.023-0.04] unit increase	Illumina [31500000] (imputed)	N
900	chr19	41338555	41338556	rs3865453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs3865453-T	NR	3E-23		0.0465	[0.037-0.056] unit increase	Affymetrix [9000000] (imputed)	N
900	chr19	41338555	41338556	rs3865453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.2	NR	rs3865453-T	NR	4E-9		0.0276	[0.018-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
900	chr19	41338555	41338556	rs3865453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.2	NR	rs3865453-T	NR	2E-9		0.0283	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
900	chr19	41338555	41338556	rs3865453	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	19q13.2	RAB4B	rs3865453-T	0.0654	3E-12				Affymetrix, Illumina [up to 1207583] (imputed)	N
900	chr19	41338846	41338847	rs143200968	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	19q13.2	HNRNPUL1	rs143200968-C	0.0224	3E-8		0.0390865	[0.025-0.053] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
900	chr19	41338846	41338847	rs143200968	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	19q13.2	NR	rs143200968-C	0.0251	7E-28	(Conditioned on chr19:41371480, chr19:41353107)	0.08610489	[0.071-0.102] unit decrease	NR [~ 10000000] (imputed)	N
900	chr19	41339895	41339896	rs12459249	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs mixed)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 110,403 European ancestry mixed smokers, 23,605 African American mixed smokers, 11,221 Hispanic mixed smokers	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs12459249-C		8E-15		0.94	[NR]	Affymetrix [~ 79000000] (imputed)	N
900	chr19	41339895	41339896	rs12459249	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (past)	77,515 European ancestry individuals	NA	19q13.2		rs12459249-T	NR	1E-11		0.033	NR unit decrease	Affymetrix [~ 79000000] (imputed)	N
900	chr19	41339895	41339896	rs12459249	28921760	Chenoweth MJ	2017-09-16	Addiction	Genome-wide association study of a nicotine metabolism biomarker in African American smokers: impact of chromosome 19 genetic influences.	Nicotine metabolite ratio in current smokers	954 African American individuals	480 African American individuals	19q13.2	CYP2A6	rs12459249-C	NR	1E-39		0.59	[0.50-0.68] unit increase	Illumina [at least 17919969] (imputed)	N
900	chr19	41339895	41339896	rs12459249	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	19q13.2	CYP2A6	rs12459249-C	0.66	3E-8		1.1	[1.06,1.14]	Affymetrix, Illumina [NR] (imputed)	N
900	chr19	41341228	41341229	rs12461964	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.2	CYP2T1P, CYP2A6	rs12461964-?		1E-10		0.0499	[0.035-0.065] unit decrease	Illumina [31500000] (imputed)	N
900	chr19	41341228	41341229	rs12461964	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	19q13.2	EGLN2, CYP2A6	rs12461964-A	0.504	8E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix [11535925] (imputed)	N
900	chr19	41341228	41341229	rs12461964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs12461964-A	0.551	5E-7		0.011	unit increase	Illumina [NR] (imputed)	N
900	chr19	41341228	41341229	rs12461964	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs12461964-A	0.549	2E-7		0.057	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41341412	41341413	rs117287096	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	19q13.2	CYP2A6	rs117287096-G	0.977611	2E-11	(EA)	0.0281939	[0.02-0.036] unit decrease	Affymetrix [~ 8800000] (imputed)	N
900	chr19	41341588	41341589	rs7251418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs7251418-G	NR	5E-42		0.0362	[0.031-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
900	chr19	41342841	41342842	rs145580088	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	19q13.2	NR	rs145580088-G	0.024	9E-13	(Conditioned on chr19:41371480, chr19:41353107)	0.09095512	[0.066-0.116] unit increase	NR [~ 10000000] (imputed)	N
900	chr19	41343699	41343700	rs76112798	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	19q13.2	NR	rs76112798-T	0.0697	2E-18		0.0388783	[0.03-0.048] unit decrease	NR [9732723] (imputed)	N
900	chr19	41343748	41343749	rs140980078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.2		rs140980078-T	NR	2E-24		0.0494	[0.04-0.059] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
900	chr19	41343748	41343749	rs140980078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	19q13.2		rs140980078-T	0.174637	6E-25		0.0508348	[0.041-0.06] unit decrease	Illumina [13478956] (imputed)	N
900	chr19	41343748	41343749	rs140980078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19q13.2		rs140980078-T	NR	4E-28		0.052	[0.043-0.061] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
900	chr19	41343748	41343749	rs140980078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	19q13.2		rs140980078-T	0.174755	2E-28		0.0531361	[0.044-0.063] unit decrease	Illumina [13478866] (imputed)	N
900	chr19	41343870	41343871	rs11668399	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs11668399-C	0.29	2E-10		6.37	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41345988	41345989	rs35755165	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs35755165-A	0.562	8E-7		0.012	unit increase	Illumina [NR] (imputed)	N
900	chr19	41345988	41345989	rs35755165	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs35755165-A	0.559	2E-8		0.065	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41346767	41346768	rs2316205	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Cotinine levels in current smokers	5,185 European ancestry individuals	NA	19q13.2		rs2316205-T	0.492	1E-11		0.137	[0.098-0.176] unit increase	Illumina [9622178] (imputed)	N
900	chr19	41346767	41346768	rs2316205	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	RAB4B-EGLN2, CYP2A6	rs2316205-C	NR	4E-14		0.1786	[0.13-0.22] unit increase	Illumina [11892802] (imputed)	N
900	chr19	41346767	41346768	rs2316205	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs2316205-T	0.549	4E-7		0.012	unit increase	Illumina [NR] (imputed)	N
900	chr19	41346767	41346768	rs2316205	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs2316205-T	0.545	1E-7		0.06	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41349232	41349233	rs2259217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	19q13.2		rs2259217-G	0.174092	1E-9		0.0302426	[0.021-0.04] unit decrease	Illumina [13476165] (imputed)	N
900	chr19	41349549	41349550	rs8192733	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A6	rs8192733-C	0.428	3E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
900	chr19	41349549	41349550	rs8192733	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A6	rs8192733-C	0.431	3E-7		0.063	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	2E-8		0.0230106	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	4E-8		0.0224965	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	1E-8		0.0237331	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	3E-8		0.0227187	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	1E-8		0.0234529	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	3E-8		0.0231974	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	4E-9		0.0243826	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420788	6E-9		0.0239432	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420828	3E-8		0.0218076	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	2E-8		0.0231331	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	2E-8		0.0235212	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	7E-9		0.0238214	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	8E-9		0.0241421	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	1E-8		0.0237825	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	1E-8		0.0237631	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	8E-9		0.0240607	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	8E-9		0.0240384	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.2		rs56113850-T	0.420796	9E-9		0.0239612	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
900	chr19	41353106	41353107	rs56113850	34599228	Chenoweth MJ	2021-10-01	Sci Rep	Analyses of nicotine metabolism biomarker genetics stratified by sex in African and European Americans.	Nicotine metabolite ratio in current smokers	541 European ancestry individuals	NA	19q13.2		rs56113850-C	NR	1E-37		0.748	[0.64-0.85] unit increase	Illumina [7599895] (imputed)	N
900	chr19	41353106	41353107	rs56113850	34599228	Chenoweth MJ	2021-10-01	Sci Rep	Analyses of nicotine metabolism biomarker genetics stratified by sex in African and European Americans.	Nicotine metabolite ratio in current smokers	389 European ancestry individuals	NA	19q13.2		rs56113850-C	NR	7E-22		0.671	[0.54-0.8] unit increase	Illumina [7602147] (imputed)	N
900	chr19	41353106	41353107	rs56113850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.2		rs56113850-C	NR	1E-89		0.0472	[0.042-0.052] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19q13.2	CYP2A6	rs56113850-T	0.422385	1E-15		0.00312488	[0.0024-0.0039] unit decrease	Affymetrix [13995440] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	19q13.2	NR	rs56113850-T	0.41	7E-11		0.9	[0.86-0.94]	Illumina [8468885] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.2	NR	rs56113850-C	NR	3E-12		0.0167	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-T	0.421755	2E-29		0.02649	[0.022-0.031] unit decrease	Affymetrix [19400838] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-T	0.421821	5E-19		0.02071	[0.016-0.025] unit decrease	Affymetrix [19400838] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	19q13.2	CYP2A6	rs56113850-T	NR	4E-16		0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-C		7E-33		0.946	[NR]	Affymetrix [up to 79000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	19q13.2	NR	rs56113850-C	NR	3E-9		0.92	[0.89-0.94]	NR [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	19q13.2	NR	rs56113850-C	NR	8E-6		0.93	[0.89-0.96]	NR [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs56113850-T	0.422594	2E-10		0.013364	[0.0093-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs56113850-T	0.42254	6E-11		0.0135934	[0.0095-0.0177] unit decrease	Affymetrix [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Smoking intensity (cotinine levels/cigarettes per day)	4,772 European ancestry individuals	NA	19q13.2		rs56113850-T	0.447	3E-13		0.155	[0.11-0.2] unit increase	Illumina [9622178] (imputed)	N
900	chr19	41353106	41353107	rs56113850	32157176	Buchwald J	2020-03-10	Mol Psychiatry	Genome-wide association meta-analysis of nicotine metabolism and cigarette consumption measures in smokers of European descent.	Nicotine metabolite ratio in current smokers	5,185 European ancestry individuals	NA	19q13.2		rs56113850-T	0.447	6E-261		0.682	[0.64-0.72] unit decrease	Illumina [9622178] (imputed)	N
900	chr19	41353106	41353107	rs56113850	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	19q13.2	CYP2A6	rs56113850-C	0.487	3E-9		1.09	[1.06-1.12]	Illumina [~ 11000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	19q13.2	CYP2A6	rs56113850-C	0.5776	8E-16		0.0121	[0.0092-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	19q13.2	CYP2A6	rs56113850-C	0.5766	7E-11		0.0107	[0.0076-0.0138] unit increase	Affymetrix [~ 7740000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	19q13.2	CYP2A6	rs56113850-C	0.5766	8E-11		0.0107	[0.0076-0.0138] unit increase	Affymetrix [~ 7740000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q13.2	CYP2A6	rs56113850-C	0.5769	2E-10		1.0231643		Affymetrix [11880941] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-C	0.575	3E-68		0.0719	[0.064-0.08] unit increase	Illumina [~ 250000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-C	0.572	6E-25		0.0385	[0.031-0.046] unit increase	Illumina [~ 250000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	19q13.2	NR	rs56113850-C	0.567	6E-10		0.00974331	[0.0067-0.0128] unit decrease	NR [9732723] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	19q13.2	NR	rs56113850-C	0.567	2E-48		0.05760633	[0.05-0.065] unit decrease	NR [~ 10000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	19q13.2	NR	rs56113850-C	0.555	4E-99		0.0523096	[0.047-0.057] unit increase	NR [~ 10000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	19q13.2	NR	rs56113850-C	0.555	5E-58		0.0361686	[0.032-0.041] unit increase	NR [9732723] (imputed)	N
900	chr19	41353106	41353107	rs56113850	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	19q13.2	CYP2A6	rs56113850-C	0.55529151	7E-11		1.1555213	[1.11-1.21]	Illumina [10439017] (imputed)	N
900	chr19	41353106	41353107	rs56113850	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	19q13.2	CYP2A6	rs56113850-C	0.564992436	4E-13		1.1372905	[1.1-1.18]	Illumina [10439017] (imputed)	N
900	chr19	41353106	41353107	rs56113850	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	19q13.2	CYP2A6	rs56113850-C	0.559578448	5E-19		1.1306498	[1.1-1.16]	Illumina [10439017] (imputed)	N
900	chr19	41353106	41353107	rs56113850	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.2	CYP2A6	rs56113850-C	0.555412481999999	9E-10		1.121034	[1.08-1.16]	Illumina [10439017] (imputed)	N
900	chr19	41353106	41353107	rs56113850	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 3,7-dimethylxanthine (theobromine) level)	8,911 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs56113850-T	0.43	4E-6		4.59	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs56113850-T	0.43	9E-22		9.59	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) level)	5,353 European ancestry individuals	833 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs56113850-T	0.43	6E-8		5.43	Z score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41353106	41353107	rs56113850	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-T	NR	1E-50		0.3644	[0.32-0.41] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41353106	41353107	rs56113850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A6	rs56113850-T	0.462	5E-9		0.014	unit increase	Illumina [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A6	rs56113850-T	0.458	2E-8		0.067	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41353106	41353107	rs56113850	26407342	Loukola A	2015-09-25	PLoS Genet	A Genome-Wide Association Study of a Biomarker of Nicotine Metabolism.	Nicotine metabolite ratio in current smokers	1,518 Finnish ancestry individuals	NA	19q13.2	CYP2A6	rs56113850-?	NR	6E-86		0.653	[0.59-0.72] unit decrease	Illumina [8970401] (imputed)	N
900	chr19	41353106	41353107	rs56113850	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	19q13.2	CYP2A6	rs56113850-T	0.40	1E-9	(Moderate Centrilobular)	0.02	[0.012-0.028] unit decrease	Illumina [6942916] (imputed)	N
900	chr19	41353106	41353107	rs56113850	25006744	Castaldi PJ	2014-07-09	Am J Respir Crit Care Med	Genome-wide association identifies regulatory Loci associated with distinct local histogram emphysema patterns.	Local histogram emphysema pattern	3,732 European ancestry smoker individuals, 2,724 European ancestry chronic obstructive pulmonary disease smoker cases, 2,372 African American smoker individuals, 786 African American chronic obstructive pulmonary disease smoker cases	NA	19q13.2	CYP2A6	rs56113850-T	0.4	1E-6	(Moderate Centrilobular, EA)	0.02	[0.012-0.028] unit decrease	Illumina [6942916] (imputed)	N
900	chr19	41353337	41353338	rs56267346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19q13.2		rs56267346-G	NR	3E-8		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
900	chr19	41353337	41353338	rs56267346	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.2	CYP2A6	rs56267346-?	NR	3E-14		0.0256	[0.02-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
900	chr19	41353337	41353338	rs56267346	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs56267346-A	0.82	9E-10		6.13	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41354457	41354458	rs28399442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs28399442-A	NR	5E-12		0.057	[0.041-0.073] unit increase	Affymetrix [9000000] (imputed)	N
900	chr19	41354457	41354458	rs28399442	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	19q13.2	NR	rs28399442-A	0.0256	4E-24		0.071775	[0.058-0.086] unit decrease	NR [9732723] (imputed)	N
900	chr19	41354457	41354458	rs28399442	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	19q13.2	RAB4B, CYP2A6	rs28399442-A	0.013	2E-12				Affymetrix, Illumina [up to 1207583] (imputed)	N
900	chr19	41354457	41354458	rs28399442	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs28399442-A	0.02	9E-11		6.48	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41354495	41354496	rs8192726	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	19q13.2	NR	rs8192726-A	0.0679	8E-16	(Conditioned on chr19:41338847, chr19:41371480, chr19:41353107)	0.039343726	[0.03-0.049] unit decrease	NR [~ 10000000] (imputed)	N
900	chr19	41354532	41354533	rs1801272	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.2	NR	rs1801272-A	0.97302	1E-12		0.0475821	[0.034-0.061] unit increase	NR [NR]	N
900	chr19	41354532	41354533	rs1801272	23049750	Kumasaka N	2012-09-25	PLoS One	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	19q13.2	NR	rs1801272-T	0.012	5E-6		9.4	[5.48-13.32] unit decrease	Illumina [2312503] (imputed)	N
900	chr19	41357456	41357457	rs67210567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.2		rs67210567-T	NR	3E-9		0.045	[0.03-0.06] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
900	chr19	41357456	41357457	rs67210567	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs67210567-T	0.02	3E-9		5.94	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41357631	41357632	rs7260629	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs7260629-T	0.3	2E-11		6.73	Z-score increase	Illumina [~ 31000000] (imputed)	N
900	chr19	41357909	41357910	rs57837628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs57837628-A	0.542	7E-7		0.014	unit increase	Illumina [NR] (imputed)	N
900	chr19	41357909	41357910	rs57837628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs57837628-A	0.538	4E-8		0.073	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41358623	41358624	rs4105144	20418888	Thorgeirsson TE	2010-04-25	Nat Genet	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	19q13.2	CYP2A6, RAB4D	rs4105144-C	0.70	2E-12		0.39	[0.27-0.51] CPD increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
900	chr19	41359995	41359996	rs3875149	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs3875149-A	0.388	6E-8		0.013	unit increase	Illumina [NR] (imputed)	N
900	chr19	41359995	41359996	rs3875149	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs3875149-A	0.386	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41361572	41361572	rs5828081	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	NUMBL, CYP2A6, ADCK4, ITPKC, SNRPA, MIA	rs5828081-AT	0.66	5E-12		6.92	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41361807	41361808	rs111645190	28921760	Chenoweth MJ	2017-09-16	Addiction	Genome-wide association study of a nicotine metabolism biomarker in African American smokers: impact of chromosome 19 genetic influences.	Nicotine metabolite ratio in current smokers	954 African American individuals	480 African American individuals	19q13.2	CYP2A6	rs111645190-A	NR	1E-23		0.62	[0.50-0.74] unit decrease	Illumina [at least 17919969] (imputed)	N
900	chr19	41362292	41362293	rs113288603	26407342	Loukola A	2015-09-25	PLoS Genet	A Genome-Wide Association Study of a Biomarker of Nicotine Metabolism.	Nicotine metabolite ratio in current smokers	1,518 Finnish ancestry individuals	NA	19q13.2	CYP2A6	rs113288603-?	NR	7E-25	(conditioned on rs56113850)	0.536	[0.43-0.64] unit decrease	Illumina [8970401] (imputed)	N
900	chr19	41363094	41363098	rs200292835	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs200292835-T	0.68	1E-8		5.71	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41363764	41363765	rs8102683	23049750	Kumasaka N	2012-09-25	PLoS One	Haplotypes with copy number and single nucleotide polymorphisms in CYP2A6 locus are associated with smoking quantity in a Japanese population.	Smoking behavior	11,696 Japanese ancestry smokers	5,462 Japanese ancestry smokers	19q13.2	CYP2A6	rs8102683-?	NR	4E-42		2.76	[2.36-3.16] unit increase	Illumina [2312503] (imputed)	N
900	chr19	41366927	41366928	rs8102900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs8102900-A	0.617	3E-8		0.014	unit decrease	Illumina [NR] (imputed)	N
900	chr19	41366927	41366928	rs8102900	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs8102900-A	0.619	3E-7		0.062	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41370337	41370338	rs12461383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs12461383-C	0.549	3E-6		0.013	unit increase	Illumina [NR] (imputed)	N
900	chr19	41370337	41370338	rs12461383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs12461383-C	0.544	1E-7		0.072	NR unit increase	Illumina [NR] (imputed)	N
900	chr19	41371479	41371480	rs117824460	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.2		rs117824460-G	NR	1E-11		0.0523	[0.037-0.067] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
900	chr19	41371479	41371480	rs117824460	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.2	CYP2A7	rs117824460-A	0.972181	2E-86		0.0139029	[0.012-0.015] unit decrease	Affymetrix [13995440] (imputed)	N
900	chr19	41371479	41371480	rs117824460	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	19q13.2	NR	rs117824460-G	0.0265	1E-12	(Conditioned on chr19:41353107)	0.086499155	[0.063-0.11] unit increase	NR [~ 10000000] (imputed)	N
900	chr19	41371479	41371480	rs117824460	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	19q13.2	NR	rs117824460-G	0.026	8E-35	(Conditioned on chr19:41353107)	0.09525982	[0.08-0.11] unit decrease	NR [~ 10000000] (imputed)	N
900	chr19	41371479	41371480	rs117824460	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	19q13.2	NR	rs117824460-G	0.026	1E-33		0.0878402	[0.074-0.102] unit decrease	NR [9732723] (imputed)	N
900	chr19	41372474	41372475	rs7247903	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2A6, CYP2A7	rs7247903-G	NR	1E-21		0.3222	[0.26-0.39] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41375029	41375030	rs59586387	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.2	CTC-490E21.12	rs59586387-C	0.938667	7E-11		0.0266219	[0.019-0.035] unit decrease	Affymetrix [NR] (imputed)	N
900	chr19	41375029	41375030	rs59586387	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	19q13.2	NR	rs59586387-G	0.0679	3E-11	(Conditioned on chr19:41342842, chr19:41371480, chr19:41353107)	0.05138838	[0.036-0.067] unit increase	NR [~ 10000000] (imputed)	N
900	chr19	41381839	41381840	rs11083575	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to SSRI (responders vs non-responders)	13,130 European ancestry responders, 6,610 European ancestry non-responders	NA	19q13.2	NR	rs11083575-G	NR	7E-6		1.129	NR	Illumina [at least 560000] (imputed)	N
900	chr19	41384674	41384675	rs4079366	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2A7	rs4079366-T	NR	8E-14		0.1854	[0.14-0.23] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41388739	41388740	rs28602288	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs28602288-T	0.65	1E-8		5.72	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41388739	41388740	rs28602288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A7	rs28602288-T	0.625	1E-6		0.01	unit decrease	Illumina [NR] (imputed)	N
900	chr19	41388739	41388740	rs28602288	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A7	rs28602288-T	0.626	3E-7		0.051	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41407873	41407874	rs73931391	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2G1P, CYP2B7P1	rs73931391-G	NR	2E-12		0.5852	[0.42-0.75] unit decrease	Illumina [11892802] (imputed)	N
900	chr19	41408158	41408159	rs62109001	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.2	CYP2G1P	rs62109001-A	0.951819	5E-9		0.00317021	[0.0021-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
900	chr19	41412191	41412192	rs184589612	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs184589612-T	0.99	3E-9		5.92	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41414480	41414481	rs72480748	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Peripheral artery disease	2,784 Japanese ancestry male cases, 106,563 Japanese ancestry male controls	NA	19q13.2		rs72480748-A	0.243040657	4E-8		1.211581	[1.131589307-1.297227288]	Illumina [8919992] (imputed)	N
900	chr19	41414480	41414481	rs72480748	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	19q13.2	CYP2G1P, CYP2A7P2	rs72480748-?	NR	9E-8		0.076	[0.049-0.103] unit increase	Illumina [6108828] (imputed)	N
900	chr19	41414480	41414481	rs72480748	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs72480748-A	0.31	1E-9		6.08	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41414480	41414481	rs72480748	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	CYP2A7	rs72480748-A	0.285	6E-7		0.05	NR unit decrease	Illumina [NR] (imputed)	N
900	chr19	41415111	41415112	rs3844442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Peripheral artery disease	4,112 East Asian ancestry cases, 173,601 East Asian ancestry controls	NA	19q13.2		rs3844442-A	0.485087621	1E-8		0.13315195	[0.088-0.179] unit increase	Illumina [13429824] (imputed)	N
900	chr19	41416831	41416831	rs146260021	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	19q13.2		rs146260021-AT	0.265016831	2E-17		1.2961061	[1.220675953-1.376197347]	Illumina [8919992] (imputed)	N
900	chr19	41416947	41416948	rs56129017	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	72,655 Japanese ancestry individuals	NA	19q13.2	CYP2A6	rs56129017-T	0.26	2E-96		0.131	[0.0095-0.2525] unit increase	Illumina [5961480] (imputed)	N
900	chr19	41416947	41416948	rs56129017	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	58,784 Japanese ancestry males	NA	19q13.2	CYP2A6	rs56129017-T	0.26	2E-88		0.139	[-0.08248-0.36048] unit increase	Illumina [6108828] (imputed)	N
900	chr19	41416947	41416948	rs56129017	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Smoking behaviour (cigarettes smoked per day)	13,871 Japanese ancestry females	NA	19q13.2	CYP2A6	rs56129017-T	0.26	6E-9		0.084	[0.057-0.111] unit increase	Illumina [6108828] (imputed)	N
900	chr19	41417718	41417719	rs10426903	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Smoking behaviour (cigarettes smoked per day)	7,171 African American individuals, 4,198 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 2,176 Native Hawaiian ancestry individuals, 288 Native American ancestry individuals, 111 individuals	NA	19q13.2	CYP2G1P, CYP2B7P1	rs10426903-?	NR	3E-8		0.041	[0.027-0.055] unit increase	Illumina [27957689] (imputed)	N
900	chr19	41417726	41417727	rs10425738	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs10425738-A	0.72	2E-8		5.65	Z-score decrease	Illumina [~ 31000000] (imputed)	N
900	chr19	41417726	41417727	rs10425738	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2G1P, CYP2B7P1	rs10425738-G	NR	1E-24		0.2425	[0.2-0.29] unit decrease	Illumina [11892802] (imputed)	N
901	chr19	41419293	41419294	rs76935404	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2G1P, CYP2B7P1	rs76935404-T	NR	1E-25		0.2489	[0.2-0.29] unit increase	Illumina [11892802] (imputed)	N
901	chr19	41431934	41431935	rs3844443	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.2	NR	rs3844443-C	NR	2E-20		0.0253	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
901	chr19	41442596	41442597	rs73038469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	19q13.2		rs73038469-A	0.173724215	1E-20		0.31663638	[0.25-0.38] unit increase	Illumina [13427899] (imputed)	N
901	chr19	41485379	41485380	rs56881024	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	19q13.2	CYP2A6, NUMBL, ADCK4, ITPKC, SNRPA, MIA	rs56881024-A	0.65	3E-8		5.57	Z-score decrease	Illumina [~ 31000000] (imputed)	N
901	chr19	41502521	41502522	rs8101756	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19q13.2	CYP2B6	rs8101756-?		3E-6	(EA)	0.1292686	[0.075-0.184] unit increase	Illumina [13620258] (imputed)	N
901	chr19	41514039	41514040	rs7260538	27839851	Lind L	2016-11-11	Environ Int	Genetic and methylation variation in the CYP2B6 gene is related to circulating p,p'-dde levels in a population-based sample.	DDT metabolite (p,p'-DDE levels)	up to 1,016 European ancestry individuals	NA	19q13.2	CYP2B6	rs7260538-T	NR	2E-31		0.52	[0.44-0.60] unit decrease	Illumina [NR] (imputed)	N
901	chr19	41515262	41515263	rs2279343	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	19q13.2	CYP2B6	rs2279343-G	0.24819999999999998	4E-15		0.2795	[-0.05997-0.61897]	Illumina [281811]	N
901	chr19	41515262	41515263	rs2279343	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	19q13.2	CYP2B6	rs2279343-G	0.2482	7E-8		0.1756	[-0.53843-0.88963]	Illumina [281811]	N
901	chr19	41515262	41515263	rs2279343	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	19q13.2	CYP2B6	rs2279343-G	0.2482	6E-13		0.181	[-0.34173-0.70373]	Illumina [281811]	N
901	chr19	41515701	41515702	rs2279345	33756427	Li S	2021-03-20	Environ Int	Identification of common genetic variants associated with serum concentrations of p, p'-DDE in non-occupational populations in eastern China.	DDT metabolite (p,p'-DDE levels)	511 Han Chinese ancestry individuals	1,842 Han Chinese ancestry individuals	19q13.2	CYP2B6	rs2279345-T	0.344	3E-31		0.334	[0.28-0.39] unit decrease	Illumina [712154]	N
901	chr19	41520350	41520351	rs7255374	27839851	Lind L	2016-11-11	Environ Int	Genetic and methylation variation in the CYP2B6 gene is related to circulating p,p'-dde levels in a population-based sample.	DDT metabolite (p,p'-DDE levels)	up to 1,016 European ancestry individuals	NA	19q13.2	CYP2B6	rs7255374-?	NR	1E-19		0.44	[0.34-0.54] unit increase	Illumina [NR] (imputed)	N
901	chr19	41521531	41521532	rs7259965	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of organochlorine pesticides	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	19q13.2	CYP2B6	rs7259965-?		8E-11	(p,p'-DDE)	0.32	[0.22-0.42] unit increase	Affymetrix [629686]	N
901	chr19	41521531	41521532	rs7259965	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	19q13.2	CYP2B6	rs7259965-?		8E-6	(Sum PBDE)	0.24	[0.14-0.34] unit increase	Affymetrix [629686]	N
901	chr19	41521531	41521532	rs7259965	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	19q13.2	CYP2B6	rs7259965-?		4E-6	(BDE-100)	0.28	[0.16-0.4] unit increase	Affymetrix [629686]	N
901	chr19	41521531	41521532	rs7259965	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	19q13.2	CYP2B6	rs7259965-?		2E-8	(BDE-99)	0.32	[0.2-0.44] unit increase	Affymetrix [629686]	N
901	chr19	41521637	41521638	rs7260329	20418888	Thorgeirsson TE	2010-04-25	Nat Genet	Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior.	Smoking behavior	31,266 European ancestry individuals	54,731 European ancestry individuals	19q13.2	CYP2B6	rs7260329-G	0.69	6E-6		0.2	[0.12-0.28] CPD increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
901	chr19	41522068	41522069	rs8109848	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	19q13.2	CYP2B6	rs8109848-?		4E-13	(PCB99)	0.34	[0.24-0.44] unit increase	Illumina [8736858] (imputed)	N
901	chr19	41522068	41522069	rs8109848	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	19q13.2	CYP2B6	rs8109848-?		3E-8	(PCB138)	0.26	[0.16-0.36] unit increase	Illumina [8736858] (imputed)	N
901	chr19	41523015	41523016	rs3181842	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	19q13.2	CYP2B6	rs3181842-?	NR	1E-7	(PCB153)	0.23	[0.15-0.31] unit increase	Illumina [8736858] (imputed)	N
901	chr19	41535002	41535003	rs17799912	31211820	Deek R	2019-06-18	PLoS One	Genome-wide association analysis of HDL-C in a Lebanese cohort.	High density lipoprotein cholesterol levels	2,700 Lebanese ancestry individuals	NA	19q13.2	CYP2B6	rs17799912-T	NR	5E-7		0.0524	[0.0319-0.0728] unit increase	Illumina [307238]	N
901	chr19	41538077	41538078	rs76617915	27488534	Patel YM	2016-08-03	Cancer Res	Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk.	Nicotine metabolite ratio in current smokers	437 European ancestry individuals, 364 African American individuals, 453 Latino individuals, 674 Japanese American individuals, 311 Native Hawaiian ancestry individuals	NA	19q13.2	CYP2B6, CYP2A13	rs76617915-A	NR	2E-8		0.6151	[0.4-0.83] unit decrease	Illumina [11892802] (imputed)	N
901	chr19	41544356	41544357	rs139691875	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19q13.2	CYP2B6, CYP2A13	rs139691875-?	NR	3E-7		0.165929	[0.1-0.23] unit decrease	Illumina [19707525] (imputed)	N
902	chr19	41582931	41582932	rs10416170	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	19q13.2	NR	rs10416170-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
902	chr19	41606219	41606220	rs149074870	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	19q13.2	intergenic	rs149074870-C	0.047619	2E-6		1.1332	[0.68-1.59] unit increase	NR [7263501] (imputed)	N
902	chr19	41661922	41661923	rs74330485	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	19q13.2	intergenic	rs74330485-A	0.95	8E-7		0.4567	[0.28-0.64] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
902	chr19	41673847	41673848	rs8105815	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	19q13.2	NR	rs8105815-?	NR	8E-6		1.3918	[NR]	Illumina [NR] (imputed)	N
903	chr19	41701527	41701528	rs338598	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	19q13.2	CYP2S1	rs338598-C	0.497	6E-11		1.1627907	[1.11-1.22]	Affymetrix, Illumina [up to 37123566] (imputed)	N
903	chr19	41704303	41704304	rs338593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	19q13.2		rs338593-C	NR	6E-13		0.1465	[0.11-0.19] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
903	chr19	41711607	41711608	rs338587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.2	NR	rs338587-G	0.440477	6E-11		0.012115	[0.0085-0.0157] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
903	chr19	41711607	41711608	rs338587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs338587-G	0.458354	7E-10				Affymetrix, Illumina [23114412] (imputed)	N
903	chr19	41711607	41711608	rs338587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.2	NR	rs338587-G	0.440208	6E-11		0.012688	[0.0089-0.0165] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
903	chr19	41723886	41723887	rs8101017	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19q13.2	NR	rs8101017-?		5E-7	(AXL)	0.2414	[NR] unit decrease	Illumina [NR]	N
903	chr19	41724884	41724885	rs28364580	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.2	AXL	rs28364580-G	0.756587	9E-30		0.0248416	[0.021-0.029] unit increase	NR [13737936] (imputed)	N
903	chr19	41724884	41724885	rs28364580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.2		rs28364580-?	NR	7E-23				NR [~ 8900000] (imputed)	N
903	chr19	41724884	41724885	rs28364580	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.2		rs28364580-?	NR	2E-26		0.0251031	[0.02-0.03] unit increase	Affymetrix [20259828] (imputed)	N
903	chr19	41726166	41726167	rs4803446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.2		rs4803446-?	NR	2E-10				NR [~ 8900000] (imputed)	N
903	chr19	41728764	41728765	rs10409940	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.2	AXL	rs10409940-T	0.514381	7E-9	(56 ms)	0.0340095	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
903	chr19	41733144	41733145	rs6508974	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	19q13.2	AXL	rs6508974-C	0.3679666666666666	1E-6		0.8663	[0.52-1.21] unit increase	Affymetrix [NR] (imputed)	N
903	chr19	41734058	41734059	rs4802111	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.2	AXL	rs4802111-C	0.540256	1E-21		0.017988	[0.014-0.022] unit decrease	NR [13737936] (imputed)	N
903	chr19	41734058	41734059	rs4802111	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.2		rs4802111-?	NR	1E-15		0.0161938	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr19	41734489	41734490	rs4802112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.2		rs4802112-G	NR	1E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
903	chr19	41734489	41734490	rs4802112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.2	NR	rs4802112-G	0.312485	4E-15		0.0156	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
903	chr19	41734489	41734490	rs4802112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.2	NR	rs4802112-G	0.315678	1E-17		0.017883	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
903	chr19	41737850	41737851	rs12973055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.2	AXL	rs12973055-A	0.311777	2E-10		0.0155289145	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
903	chr19	41737850	41737851	rs12973055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.2	AXL	rs12973055-A	0.311711	4E-14		0.0173964	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
903	chr19	41737850	41737851	rs12973055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.2	AXL	rs12973055-A	0.3117	4E-16		0.019594017	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
903	chr19	41740894	41740895	rs4802113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.2		rs4802113-C	NR	3E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
903	chr19	41740894	41740895	rs4802113	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.2	AXL	rs4802113-T	0.543187	1E-9		0.0121788	[0.0083-0.0161] unit increase	Affymetrix [NR] (imputed)	N
903	chr19	41741277	41741278	rs4802114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.2		rs4802114-A	NR	9E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
903	chr19	41752634	41752635	rs4803451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.2	AXL	rs4803451-C	0.307478	1E-9		0.014554116	[0.0098-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr19	41754429	41754430	rs35538872	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	19q13.2		rs35538872-?	NR	1E-16		0.0893171	[0.067-0.112] unit decrease	NR [9800000] (imputed)	N
903	chr19	41754429	41754430	rs35538872	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	19q13.2		rs35538872-?	NR	5E-31		0.129176	[0.11-0.15] unit decrease	NR [9800000] (imputed)	N
903	chr19	41760912	41760913	rs73045226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.2	NR	rs73045226-G	NR	1E-12		0.0262	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
903	chr19	41760912	41760913	rs73045226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.2	NR	rs73045226-G	NR	3E-11		0.0246	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
903	chr19	41762524	41762525	rs2304232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19q13.2		rs2304232-?	NR	1E-7				NR [~ 8900000] (imputed)	N
903	chr19	41765228	41765229	rs12980267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.2		rs12980267-C	NR	2E-12		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
903	chr19	41767986	41767987	rs1946612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.2	NR	rs1946612-A	0.266652	2E-12		0.014731	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
903	chr19	41770889	41770890	rs12983339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs12983339-G	0.259978	5E-17				Affymetrix, Illumina [24246363] (imputed)	N
903	chr19	41770889	41770890	rs12983339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs12983339-G	0.260204	2E-18				Affymetrix, Illumina [20825802] (imputed)	N
903	chr19	41770889	41770890	rs12983339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.2		rs12983339-?	NR	2E-15				NR [~ 8900000] (imputed)	N
903	chr19	41784353	41784353	rs746549124	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.2		rs746549124-?	NR	3E-18		0.0229806	[0.018-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr19	41806549	41806550	rs180958600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.2		rs180958600-G	NR	1E-16		0.1104	[0.084-0.136] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
903	chr19	41806917	41806918	rs13345456	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.2		rs13345456-?	NR	2E-16		0.0194043	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
903	chr19	41806917	41806918	rs13345456	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.2	HNRNPUL1	rs13345456-C	0.750728	9E-11		0.0255354	[0.018-0.033] unit decrease	NR [17166351] (imputed)	N
903	chr19	41806917	41806918	rs13345456	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.2	HNRNPUL1	rs13345456-C	0.749694	4E-10	(women)	0.0337348	[0.023-0.044] unit decrease	NR [17166351] (imputed)	N
904	chr19	41813374	41813375	rs15052	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19q13.2		rs15052-?	0.1781	1E-7		0.003275	unit increase	NR [6200000] (imputed)	N
904	chr19	41813374	41813375	rs15052	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	19q13.2		rs15052-?	0.1781	7E-12		0.00996	unit increase	NR [6200000] (imputed)	N
904	chr19	41813374	41813375	rs15052	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	19q13.2		rs15052-?	0.1781	7E-10		0.01106	unit increase	NR [6200000] (imputed)	N
904	chr19	41813374	41813375	rs15052	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.2	HNRNPUL1	rs15052-T	0.824152	2E-10		0.016053	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
904	chr19	41813374	41813375	rs15052	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.2	HNRNPUL1	rs15052-T	0.824211	4E-11		0.017118	[0.012-0.022] unit decrease	Affymetrix [NR] (imputed)	N
904	chr19	41813374	41813375	rs15052	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	19q13.2	HNRNPUL1	rs15052-T	NR	2E-10		0.0173	[0.012-0.023] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
904	chr19	41813374	41813375	rs15052	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	19q13.2	HNRNPUL1	rs15052-T	0.8253	2E-10		0.0173241	[0.012-0.023] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
904	chr19	41825190	41825191	rs73045269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.2		rs73045269-T	NR	1E-25		0.0309	[0.025-0.037] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
904	chr19	41825190	41825191	rs73045269	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	19q13.2	TGFB1	rs73045269-?	NR	2E-25		0.0031	[0.0023-0.0039] unit increase	Affymetrix [21347608] (imputed)	N
904	chr19	41825190	41825191	rs73045269	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	19q13.2	TGFB1	rs73045269-?	NR	4E-9		0.0028	[0.0016-0.004] unit increase	Affymetrix [21347608] (imputed)	N
904	chr19	41825190	41825191	rs73045269	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.2	CCDC97	rs73045269-C	0.832015	3E-47		0.00979046	[0.0084-0.0111] unit decrease	Affymetrix [13995440] (imputed)	N
904	chr19	41825190	41825191	rs73045269	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19q13.2	CCDC97	rs73045269-T	0.149746	5E-10		1.07	[1.05-1.09]	NR [8126035] (imputed)	N
904	chr19	41825190	41825191	rs73045269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs73045269-T	0.15967	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
904	chr19	41825190	41825191	rs73045269	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.2	CCDC97	rs73045269-T	0.153	1E-14		0.07	[0.052-0.088] unit increase	Affymetrix [7947838] (imputed)	N
904	chr19	41826019	41826020	rs56254331	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGFB1	5,350 Icelandic ancestry individuals	NA	19q13.2		rs56254331-C	0.1681	5E-36		0.281328	[0.24-0.33] unit increase	Illumina [7506463] (imputed)	N
904	chr19	41826019	41826020	rs56254331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.2		rs56254331-C	NR	3E-11		0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
904	chr19	41826019	41826020	rs56254331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	19q13.2		rs56254331-C	NR	2E-16		0.1281	[0.098-0.159] unit decrease	Affymetrix, Illumina [25844273] (imputed)	N
904	chr19	41826019	41826020	rs56254331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.2	TGFB1, CCDC97	rs56254331-C	0.167873	2E-11		0.020211197	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
904	chr19	41826019	41826020	rs56254331	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	19q13.2	CCDC97	rs56254331-A	0.831	8E-10	(EA)	0.017	[0.011-0.023] unit increase	NR [12082474] (imputed)	N
904	chr19	41826019	41826020	rs56254331	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria (moderate to severe)	49,212 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	19q13.2	TGFB1	rs56254331-A	0.81668	2E-9		1.0869565	[1.05-1.11]	Illumina [32500000] (imputed)	N
904	chr19	41826019	41826020	rs56254331	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria (mild)	18,839 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	19q13.2	TGFB1	rs56254331-A	0.8167	9E-8		1.1037527	[1.06-1.14]	Illumina [32500000] (imputed)	N
904	chr19	41826019	41826020	rs56254331	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria	68,051 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	19q13.2	TGFB1	rs56254331-A	0.81668	1E-11		1.0905125	[1.06-1.12]	Illumina [32500000] (imputed)	N
904	chr19	41832230	41832231	rs12980942	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19q13.2	CCDC97, TGFB1	rs12980942-A	0.1599	7E-15		0.0609	[0.046-0.076] unit decrease	NR [8041861] (imputed)	N
904	chr19	41833783	41833784	rs75621460	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	19q13.2		rs75621460-A	0.0263	3E-10		1.2068335	[1.138365057-1.279420098]	Affymetrix, Illumina [NR] (imputed)	N
904	chr19	41833783	41833784	rs75621460	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	19q13.2	NR	rs75621460-A	0.03	3E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [up to 17000000] (imputed)	N
904	chr19	41833783	41833784	rs75621460	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	19q13.2	NR	rs75621460-A	0.03	2E-15		1.16	[1.12-1.2]	Affymetrix, Illumina [up to 17000000] (imputed)	N
904	chr19	41847736	41847737	rs11466334	34604815	Polfus LM	2021-03-09	HGG Adv	Genetic discovery and risk characterization in type 2 diabetes across diverse populations.	Type 2 diabetes	8,591 African American, African ancestry cases, 16,887 African American, African ancestry controls	20,344 African American, African ancestry cases, 97,933 African American, African ancestry controls	19q13.2		rs11466334-A	NR	6E-23		1.35	[1.26-1.39]	Affymetrix, Illumina [NR] (imputed)	N
904	chr19	41847736	41847737	rs11466334	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	19q13.2	TGFB1	rs11466334-A	0.094	1E-6		1.41	[1.23-1.63]	Affymetrix, Illumina [12148595] (imputed)	N
904	chr19	41847859	41847860	rs1800472	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.2	NR	rs1800472-A	0.0208107	1E-13		0.0805993	[0.059-0.102] unit decrease	NR [19129689] (imputed)	N
904	chr19	41851041	41851042	rs11466328	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Preterm birth (maternal effect)	3,331 European ancestry preterm birth mothers, 40,236 European ancestry term birth mothers	2,565 European ancestry preterm birth mothers, 6,034 European ancestry term birth mothers	19q13.2	TGFB1, B9D2, TMEM91	rs11466328-G	0.9712	5E-7		1.7636685	[NR]	Illumina [15635593] (imputed)	N
904	chr19	41851508	41851509	rs4803455	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.2	TGFB1	rs4803455-A	0.4959	8E-11		0.1617	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
904	chr19	41851508	41851509	rs4803455	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	19q13.2	B9D2, TGFB1	rs4803455-A	0.4954	2E-17		0.0484	[0.037-0.06] unit decrease	Affymetrix [at least 7947838] (imputed)	N
904	chr19	41851508	41851509	rs4803455	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.2	B9D2, TGFB1	rs4803455-A	0.493	4E-17		0.054	[0.042-0.066] unit decrease	Affymetrix [7947838] (imputed)	N
904	chr19	41851508	41851509	rs4803455	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	19q13.2	intergenic	rs4803455-?	0.5	8E-7		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2300000] (imputed)	N
904	chr19	41851715	41851716	rs10406816	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	19q13.2	TGFB1	rs10406816-?	NR	1E-26		0.0533215	[0.044-0.063] unit decrease	Illumina [4804024] (imputed)	N
904	chr19	41852774	41852775	rs2288874	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19q13.2	B9D2, TGFB1	rs2288874-T	0.4245	4E-16		0.0531	[0.04-0.066] unit increase	NR [8041861] (imputed)	N
904	chr19	41852978	41852979	rs2288873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.2		rs2288873-G	NR	3E-8		0.0703	[0.045-0.095] unit decrease	Affymetrix, Illumina [25840389] (imputed)	N
904	chr19	41852978	41852979	rs2288873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.2		rs2288873-G	NR	9E-11		0.0573	[0.04-0.075] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
904	chr19	41852978	41852979	rs2288873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	19q13.2		rs2288873-G	NR	1E-11		0.0542	[0.039-0.07] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
904	chr19	41854533	41854534	rs8108632	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	19q13.2	TGFB1	rs8108632-T	0.484	4E-8		1.048	[1.031-1.066]	Affymetrix [9149595] (imputed)	N
904	chr19	41854533	41854534	rs8108632	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	19q13.2	TGFB1	rs8108632-T	0.41	2E-8		1.05	[1.03-1.07]	Affymetrix [9061845] (imputed)	N
904	chr19	41856885	41856886	rs2241715	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGFB1	5,350 Icelandic ancestry individuals	NA	19q13.2		rs2241715-A	0.2829	9E-48		0.268852	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
904	chr19	41858920	41858921	rs1800470	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	19q13.2	NR	rs1800470-?	NR	1E-17				NR [up to 7000000]	N
904	chr19	41858920	41858921	rs1800470	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800470-A	0.620625	4E-26	(TGFB1, 14108_15_3)	0.25933942	[0.21-0.31] unit increase	Illumina [> 1000000] (imputed)	N
904	chr19	41858920	41858921	rs1800470	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800470-A	0.620625	2E-19	(B3GNT2, 7980_72_3)	0.2311113	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
904	chr19	41858920	41858921	rs1800470	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800470-A	0.620625	1E-84	(B3GNT8, 9297_12_3)	0.4816684	[0.43-0.53] unit increase	Illumina [> 1000000] (imputed)	N
904	chr19	41860295	41860296	rs1800469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800469-G	0.7184375	5E-25	(TGFB1, 14108_15_3)	0.2713824	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
904	chr19	41860295	41860296	rs1800469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800469-G	0.7184375	2E-43	(B3GNT8, 9297_12_3)	0.37084323	[0.32-0.42] unit increase	Illumina [> 1000000] (imputed)	N
904	chr19	41860295	41860296	rs1800469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs1800469-G	0.7184375	1E-14	(B3GNT2, 7980_72_3)	0.2112647	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
904	chr19	41860295	41860296	rs1800469	27145994	Wang M	2016-05-05	Nat Commun	Common genetic variation in ETV6 is associated with colorectal cancer susceptibility.	Colorectal cancer	1,023 Han Chinese ancestry cases and 1,306 Han Chinese ancestry controls	5,317 Han Chinese ancestry cases, 6,887 Han Chinese ancestry controls, 1,046 European ancestry cases, 1,076 European ancestry controls	19q13.2	TGFB1	rs1800469-A	0.456	4E-7	Han Chinese	1.36	[1.21-1.53]	Illumina [691326]	N
904	chr19	41860295	41860296	rs1800469	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	19q13.2	NR	rs1800469-G	0.48	1E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 4000000] (imputed)	N
904	chr19	41860295	41860296	rs1800469	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	19q13.2	TGFB1, B9D2	rs1800469-G	0.48	1E-8	(East Asian)	1.09	[1.06-1.12]	Affymetrix, Illumina [2400000] (imputed)	N
904	chr19	41861337	41861337	rs11466313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	19q13.2		rs11466313-CCCT	NR	6E-9		0.0489	[0.032-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
904	chr19	41861337	41861337	rs11466313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	19q13.2		rs11466313-CCCT	NR	7E-12		0.0541	[0.039-0.07] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
904	chr19	41861358	41861359	rs4803457	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	19q13.2	B9D2	rs4803457-T		2E-8		0.149	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr19	41864508	41864509	rs1982072	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	19q13.2	B9D2	rs1982072-T	0.41	9E-9		1.11	[1.07-1.16]	Illumina [5932413] (imputed)	N
904	chr19	41865292	41865293	rs4803458	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	19q13.2	B9D2	rs4803458-A	0.53	7E-9		1.12	[1.08-1.16]	Illumina [5932413] (imputed)	N
904	chr19	41869391	41869392	rs2241714	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	19q13.2	TMEM91	rs2241714-T	0.35	4E-11		1.05	[1.02-1.09]	Illumina [5167567] (imputed)	N
904	chr19	41869467	41869468	rs2241713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.2		rs2241713-C	0.487509122	1E-8		0.075943224	[0.05-0.102] unit decrease	Illumina [13427135] (imputed)	N
904	chr19	41871253	41871254	rs1025497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	19q13.2		rs1025497-G	0.483980112	2E-9		0.05054709	[0.034-0.067] unit decrease	Illumina [13429980] (imputed)	N
904	chr19	41871253	41871254	rs1025497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	19q13.2		rs1025497-G	0.483980112	4E-12		0.054740205	[0.039-0.07] unit decrease	Illumina [13429980] (imputed)	N
904	chr19	41871572	41871573	rs1963413	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	19q13.2	TGFB1, B9D2	rs1963413-A	0.6119	1E-6		1.05	[1.03-1.06]	Affymetrix, Illumina [16900397] (imputed)	N
904	chr19	41873000	41873001	rs9797885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.2		rs9797885-G	0.486979439	2E-8		0.0664458	[0.043-0.09] unit decrease	Illumina [13427711] (imputed)	N
904	chr19	41873000	41873001	rs9797885	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	19q13.2	NR	rs9797885-G	0.71	3E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
904	chr19	41876467	41876468	rs4803459	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19q13.2	TMEM91	rs4803459-?	NR	8E-15		0.077082	[0.058-0.097] unit decrease	Illumina [19707525] (imputed)	N
904	chr19	41877490	41877491	rs75041078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.2		rs75041078-A	NR	6E-10		0.0583	[0.04-0.077] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
904	chr19	41880525	41880526	rs7260340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.2		rs7260340-?	NR	4E-9				NR [~ 8900000] (imputed)	N
904	chr19	41889747	41889748	rs12602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.2	TMEM91	rs12602-C	0.616512	4E-13		0.016747931	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
904	chr19	41889747	41889748	rs12602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.2	TMEM91	rs12602-C	0.61652	3E-12		0.016118068	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
904	chr19	41889747	41889748	rs12602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.2	TMEM91	rs12602-C	0.616542	5E-12		0.015820306	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
904	chr19	41889747	41889748	rs12602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.2	TMEM91	rs12602-C	0.61655	2E-11		0.015366229	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
904	chr19	41889747	41889748	rs12602	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	19q13.2	TMEM91	rs12602-T	0.3821	8E-12		1.055	NR	Affymetrix [9154080] (imputed)	N
904	chr19	41892268	41892269	rs3826713	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.2		rs3826713-T	NR	8E-10		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
904	chr19	41900123	41900124	rs11667908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs11667908-G	0.392328	1E-10				Affymetrix, Illumina [22063850] (imputed)	N
904	chr19	41910616	41910617	rs4802117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.2		rs4802117-?	NR	5E-8				NR [~ 8900000] (imputed)	N
904	chr19	41917259	41917260	rs11879090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19q13.2		rs11879090-T	NR	2E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
904	chr19	41921579	41921580	rs1967334	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.2	NR	rs1967334-A	0.389451	2E-33		0.0384632	[0.032-0.045] unit decrease	NR [19129689] (imputed)	N
904	chr19	41922351	41922352	rs4803468	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	19q13.2	BCKDHA	rs4803468-A	0.419	2E-21		0.03	[0.024-0.036] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
904	chr19	41928335	41928336	rs284651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	19q13.2		rs284651-?	NR	5E-19				NR [~ 8900000] (imputed)	N
904	chr19	41930395	41930396	rs4674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19q13.2		rs4674-G	0.476346	6E-14		0.0151334	[0.011-0.019] unit decrease	Illumina [13479295] (imputed)	N
904	chr19	41930395	41930396	rs4674	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.2	BCKDHA	rs4674-?	NR	4E-16		0.023257961	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
904	chr19	41932062	41932063	rs45563938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	19q13.2	CTC-435M10.6, B3GNT8	rs45563938-G	NR	2E-8		0.0228128	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
904	chr19	41932062	41932063	rs45563938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.2	NR	rs45563938-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
904	chr19	41932083	41932084	rs284660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.2		rs284660-T	NR	4E-45		0.0183	[0.016-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
904	chr19	41932083	41932084	rs284660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	19q13.2	CTC-435M10.6, B3GNT8	rs284660-G	NR	1E-8		0.0180727	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
904	chr19	41932083	41932084	rs284660	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.2	NR	rs284660-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
904	chr19	41932274	41932275	rs284662	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GNT2	5,359 Icelandic ancestry individuals	NA	19q13.2		rs284662-T	0.4351	6E-73		0.329021	[0.29-0.36] unit increase	Illumina [7506463] (imputed)	N
904	chr19	41932611	41932612	rs284663	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	B3GNT8	rs284663-T	0.5603125	1E-238	(B3GNT8, 9297_12_3)	0.7441356	[0.7-0.78] unit increase	Illumina [> 1000000] (imputed)	N
904	chr19	41933793	41933796	rs557663478	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	B3GNT8	rs557663478-T	0.615	1E-119	(UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8, B3GNT8.9297.12.3)	0.55	[0.51-0.59] unit increase	Affymetrix [10572788] (imputed)	N
904	chr19	41936607	41936608	rs2569400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs2569400-?	NR	8E-60				NR [~ 8900000] (imputed)	N
904	chr19	41937094	41937095	rs17318596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19q13.2	ATP5SL	rs17318596-A	NR	6E-11		0.0209838	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
904	chr19	41937094	41937095	rs17318596	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	19q13.2		rs17318596-G	0.37	2E-8		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
904	chr19	41937094	41937095	rs17318596	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	19q13.2	ATP5SL	rs17318596-A	0.36	5E-16		0.032	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
904	chr19	41938683	41938684	rs67047091	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.2	ATP5SL	rs67047091-T	0.383	2E-78	(N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2, B3GNT2.7980.72.3)	0.45	[0.41-0.49] unit increase	Affymetrix [10572788] (imputed)	N
905	chr19	41944615	41944616	rs2304242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19q13.2	ATP5SL	rs2304242-T	NR	4E-10		0.0180642	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
905	chr19	41945836	41945837	rs13346603	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19q13.2	ATP5SL	rs13346603-A	0.3992	4E-10		0.0405	[0.028-0.053] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
905	chr19	41947224	41947225	rs184381023	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.2	Intergenic	rs184381023-G	0.992	4E-6	(AA)	0.104	unit decrease	Illumina [NR] (imputed)	N
905	chr19	41985586	41985587	rs11672691	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	19q13.2	NR	rs11672691-G	NR	4E-11		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr19	41985586	41985587	rs11672691	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19q13.2	NR	rs11672691-G	0.74	2E-23		1.1	[1.08-1.12]	Illumina [20370935] (imputed)	N
905	chr19	41985586	41985587	rs11672691	23065704	Amin Al Olama A	2012-10-12	Hum Mol Genet	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	19q13.2	ATP5SL, CEACAM21	rs11672691-G	NR	2E-12	(All)	1.08	[1.04-1.12]	Illumina [~ 2600000] (imputed)	N
905	chr19	41985586	41985587	rs11672691	23065704	Amin Al Olama A	2012-10-12	Hum Mol Genet	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	19q13.2	ATP5SL, CEACAM21	rs11672691-G	NR	1E-8	(Aggressive)	1.11	[1.02-1.20]	Illumina [~ 2600000] (imputed)	N
905	chr19	41985930	41985931	rs11673591	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q13.2	NR	rs11673591-T	NR	1E-22		1.076	[1.06-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
905	chr19	41985930	41985931	rs11673591	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.2	NR	rs11673591-A	0.25214	5E-17		0.0123488	[0.0094-0.0153] unit increase	Affymetrix [16578495] (imputed)	N
905	chr19	41985930	41985931	rs11673591	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.2	NR	rs11673591-A	0.25202	6E-19		0.0284525	[0.022-0.035] unit increase	Affymetrix [16580851] (imputed)	N
905	chr19	42020111	42020112	rs12610088	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	19q13.2		rs12610088-?	NR	4E-7		0.913559	[0.88-0.95]	NR [680312]	N
905	chr19	42066278	42066279	rs4803480	21682944	Alkelai A	2011-06-20	Int J Neuropsychopharmacol	DOCK4 and CEACAM21 as novel schizophrenia candidate genes in the Jewish population.	Schizophrenia	155 Jewish-Israeli ancestry cases and 176 Jewish-Israeli ancestry controls from 107 families	99 Arab-Israeli ancestry cases and 99 Arab-Israeli ancestry controls from 57 families	19q13.2	ATP5SL, CEACAM21	rs4803480-A	0.13	1E-7				Illumina [311517]	N
906	chr19	42096227	42096228	rs2006209	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.2	CEACAM21, CEACAM4	rs2006209-T	0.090275641	3E-7		1.1630918	[1.097720361-1.232356121]	Illumina [10439017] (imputed)	N
906	chr19	42113340	42113341	rs150239618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs150239618-?	NR	1E-8				NR [~ 8900000] (imputed)	N
906	chr19	42130283	42130284	rs8104928	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		19q13.2	CEACAM4	rs8104928-A	0.972	8E-6		0.039	[0.021-0.057] dioptres decrease	NR [5900115] (imputed)	N
907	chr19	42213407	42213408	rs59654817	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.2	CEACAM5	rs59654817-A	0.334	4E-20		0.1	[0.08-0.13] unit increase	Illumina [NR] (imputed)	N
907	chr19	42216863	42216864	rs7247317	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.2	CEACAM5	rs7247317-T	0.49	7E-9		0.1	[0.06-0.13] unit increase	Illumina [NR] (imputed)	N
907	chr19	42224909	42224910	rs201761909	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	19q13.2	CEACAM5	rs201761909-?	NR	2E-6	(East and South Asian)			NR [at least 880000]	N
907	chr19	42229175	42229176	rs12985771	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.2	CEACAM5	rs12985771-C	0.363	2E-18		0.1	[0.08-0.13] unit increase	Illumina [NR] (imputed)	N
907	chr19	42231158	42231159	rs9621	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.2	CEACAM5	rs9621-A	0.056	5E-201		0.71	[0.67-0.76] unit increase	Illumina [NR] (imputed)	N
907	chr19	42259380	42259381	rs770162662	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.2	CEACAM6	rs770162662-T	0.003	5E-10		0.63	[0.43-0.83] unit increase	Illumina [NR] (imputed)	N
907	chr19	42303946	42303947	rs140520053	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	19q13.2	NR	rs140520053-?	NR	5E-7	(AA)	1.6277	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
908	chr19	42343083	42343084	rs139542363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.2		rs139542363-G	0.01087	3E-7		0.457894	[0.28-0.63] unit increase	Illumina [7506463] (imputed)	N
908	chr19	42398953	42398954	rs539720802	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	19q13.2	ARHGEF1	rs539720802-G	0.99	6E-7		8.333334	[3.7-20]	Affymetrix, Illumina [up to 7729175] (imputed)	N
908	chr19	42424633	42424634	rs113497153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.2	NR	rs113497153-C	0.01045	1E-8	(LIPA)	0.03162	NR unit increase	Illumina [1671387] (imputed)	N
908	chr19	42439263	42439263	rs112737242	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	19q13.2	RABAC1	rs112737242-D	0.3507	6E-15		0.96956855	[NR]	Illumina [12493444] (imputed)	N
908	chr19	42453422	42453423	rs9749440	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q13.2	DMRTC2, RPS19, CD79A, ARHGEF1, RABAC1, ATP1A3	rs9749440-?		1E-9				NR [7428630] (imputed)	N
909	chr19	42516376	42516376	rs541112270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.2		rs541112270-GTGTA	NR	1E-9		0.0344	[0.023-0.046] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
909	chr19	42516376	42516376	rs541112270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.2		rs541112270-GTGTA	NR	1E-12		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
909	chr19	42516376	42516376	rs541112270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.2	GRIK5	rs541112270-GTGTA	0.051997	4E-11		0.0349893	[0.025-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr19	42516376	42516376	rs541112270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.2	NR	rs541112270-I	0.0528	4E-12		0.0337	[0.024-0.043] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
909	chr19	42521107	42521108	rs8099939	21771265	Yosifova A	2011-07-19	Genes Brain Behav	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	19q13.2	GRIK5	rs8099939-T	0.39	2E-6		1.95	[1.43-2.67]	Illumina [497732]	N
909	chr19	42538895	42538896	rs76157475	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.2	GRIK5	rs76157475-C	0.971038	2E-10		0.00421575	[0.0029-0.0056] unit decrease	Affymetrix [13995440] (imputed)	N
909	chr19	42584957	42584958	rs201596848	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	19q13.2	NR	rs201596848-T	NR	1E-6		0.11951418	[0.071-0.168] unit increase	Illumina [242289]	N
909	chr19	42584957	42584958	rs201596848	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	19q13.2	NR	rs201596848-T	0.0019	1E-11		0.25	unit decrease	Illumina [242289]	N
909	chr19	42594893	42594894	rs76335122	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19q13.2		rs76335122-T	0.882	2E-8				Affymetrix [10369434] (imputed)	N
910	chr19	42598588	42598589	rs79871448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.2	POU2F2	rs79871448-T	0.0603669999999999	2E-13		0.034292754	[0.025-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr19	42600983	42600984	rs58876439	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q13.2	POU2F2	rs58876439-A	0.0674	3E-11		1.0485413		Affymetrix [11880941] (imputed)	N
910	chr19	42603072	42603073	rs75543135	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	19q13.2	POU2F2	rs75543135-A	0.1152	3E-9		0.020827942	[0.014-0.028] unit increase	Affymetrix [11514936] (imputed)	N
910	chr19	42651599	42651600	rs8106871	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	19q13.2	NR	rs8106871-T	0.118	1E-8		0.0116998	[0.0077-0.0157] unit increase	NR [~ 9732723] (imputed)	N
910	chr19	42654749	42654750	rs191699156	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	19q13.2	MITF	rs191699156-?		3E-8				NR [7428630] (imputed)	N
910	chr19	42673596	42673597	rs17270169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs17270169-T	0.104302	2E-13				Affymetrix, Illumina [19872809] (imputed)	N
910	chr19	42677806	42677807	rs12232804	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.2	ATP1A3, GRIK5, ZNF574, POU2F2, DEDD2, ZNF526, GSK3A, ERF	rs12232804-?	NR	3E-9		0.022862	[0.015-0.03] unit decrease	Affymetrix [25921788] (imputed)	N
910	chr19	42678629	42678629	rs148872875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.2	POU2F2	rs148872875-CATAA	0.046593	2E-10		0.03358503	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr19	42678629	42678629	rs148872875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.2	NR	rs148872875-I	0.046798	3E-15		0.038349	[0.029-0.048] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
910	chr19	42697156	42697157	rs113631324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs113631324-?	NR	1E-15				NR [~ 8900000] (imputed)	N
910	chr19	42700946	42700947	rs61088131	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	19q13.2	POU2F2	rs61088131-T	NR	4E-6		1.09	[NR]	Illumina [20370935] (imputed)	N
910	chr19	42700946	42700947	rs61088131	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19q13.2	POU2F2	rs61088131-T	0.82	9E-9		1.06	[1.04-1.09]	Illumina [20370935] (imputed)	N
910	chr19	42704942	42704943	rs781313924	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.2		rs781313924-T	0.01123	1E-9		0.559415	[0.38-0.74] unit increase	Illumina [7506463] (imputed)	N
910	chr19	42708415	42708416	rs117299744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.2	NR	rs117299744-G	0.015427	4E-10		0.049279	[0.034-0.065] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
910	chr19	42712023	42712024	rs8182491	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	19q13.2	NR	rs8182491-T	0.1005	1E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
910	chr19	42713010	42713011	rs542278531	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG4	5,366 Icelandic ancestry individuals	NA	19q13.2		rs542278531-T	0.01114	1E-14		0.708935	[0.53-0.89] unit increase	Illumina [7506463] (imputed)	N
911	chr19	42729609	42729610	rs144433879	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19q13.2	ZNF526	rs144433879-A	0.306	3E-12		0.008		Illumina [243345]	N
911	chr19	42740611	42740612	rs78304176	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19q13.2		rs78304176-G	0.936	1E-12				Affymetrix [10369434] (imputed)	N
911	chr19	42747228	42747229	rs11878620	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.2		rs11878620-A	0.07	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
911	chr19	42753033	42753034	rs35493131	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.2		rs35493131-G	NR	2E-18		0.0397	[0.031-0.049] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
911	chr19	42753033	42753034	rs35493131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs35493131-G	0.0654186	2E-26				Affymetrix, Illumina [23467995] (imputed)	N
911	chr19	42753033	42753034	rs35493131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.2	NR	rs35493131-G	0.070284	1E-27		0.040913	[0.034-0.048] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
911	chr19	42753033	42753034	rs35493131	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.2	ERF	rs35493131-G	0.0696	5E-10		0.04422208	[0.03-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
911	chr19	42755697	42755698	rs2267630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs2267630-A	0.0570814	1E-17				Affymetrix, Illumina [24649327] (imputed)	N
911	chr19	42765675	42765676	rs202107710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.2		rs202107710-T	0.066896	6E-18		0.038828406	[0.03-0.048] unit increase	Affymetrix [93095623] (imputed)	N
911	chr19	42767592	42767593	rs113028115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.2	NR	rs113028115-C	0.065	1E-12		0.032027148	[0.023-0.041] unit increase	Affymetrix [93095623] (imputed)	N
911	chr19	42767592	42767593	rs113028115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.2	NR	rs113028115-C	0.067496	2E-18		0.033152	[0.026-0.041] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
911	chr19	42767592	42767593	rs113028115	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.2	NR	rs113028115-?		2E-6				Illumina [4322238] (imputed)	N
911	chr19	42767592	42767593	rs113028115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.2		rs113028115-?	NR	2E-23				NR [~ 8900000] (imputed)	N
911	chr19	42768288	42768289	rs559083563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.2		rs559083563-A	NR	8E-17		0.0445	[0.034-0.055] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
911	chr19	42768288	42768289	rs559083563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.2		rs559083563-A	NR	4E-12		0.038	[0.027-0.049] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
911	chr19	42768769	42768770	rs117359636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.2	CIC	rs117359636-A	0.004023	7E-10		0.11179816	[0.076-0.147] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr19	42768769	42768770	rs117359636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.2	NR	rs117359636-G	0.996061	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
911	chr19	42768769	42768770	rs117359636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.2	NR	rs117359636-G	0.99596	1E-11		0.113504	[0.081-0.146] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
911	chr19	42768769	42768770	rs117359636	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.2	NR	rs117359636-A	0.004051000000000027	1E-10		0.0412091	[0.028-0.055] unit increase	Affymetrix [16582909] (imputed)	N
911	chr19	42770985	42770986	rs112808618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.2		rs112808618-?	NR	5E-23				NR [~ 8900000] (imputed)	N
911	chr19	42770985	42770986	rs112808618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	19q13.2		rs112808618-?	NR	7E-8				NR [~ 8900000] (imputed)	N
911	chr19	42773976	42773977	rs77509885	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	19q13.2	CIC	rs77509885-G	0.0521	5E-6		0.0105	[0.006-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
911	chr19	42779056	42779057	rs9636121	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.2	NR	rs9636121-G	0.0497074	8E-11		0.0464806	[0.032-0.06] unit increase	NR [19129689] (imputed)	N
911	chr19	42783594	42783595	rs741070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	19q13.2	NR	rs741070-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
911	chr19	42787489	42787490	rs73552881	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs73552881-A	0.951311	3E-8		0.111905	[0.07-0.154] decrease	Affymetrix [11014269] (imputed)	N
911	chr19	42837905	42837906	rs188320625	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.2		rs188320625-A	0.0599	3E-9		2.3064163	[1.48-3.13] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
911	chr19	42855704	42855705	rs200485103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	19q13.2		rs200485103-A	NR	2E-8		0.1873	[0.12-0.25] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
911	chr19	42855704	42855705	rs200485103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	19q13.2		rs200485103-A	0.003338	2E-8		0.187251	[0.12-0.25] unit increase	Illumina [13476509] (imputed)	N
911	chr19	42857396	42857397	rs76757277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.2		rs76757277-?	NR	4E-7				NR [~ 8900000] (imputed)	N
912	chr19	42914667	42914668	rs138983180	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.2	NR	rs138983180-A	0.005552000000000001	7E-13		0.0635131	[0.047-0.08] unit increase	Affymetrix [16578495] (imputed)	N
912	chr19	42914667	42914668	rs138983180	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.2	NR	rs138983180-A	0.005595000000000017	2E-17		0.162237	[0.13-0.2] unit increase	Affymetrix [16580851] (imputed)	N
912	chr19	42922290	42922291	rs148664256	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19q13.2	NR	rs148664256-T	0.005746999999999947	7E-9		0.0755948	[0.049-0.102] unit increase	Affymetrix [16583148] (imputed)	N
912	chr19	42929882	42929883	rs181255261	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19q13.2	NR	rs181255261-A	0.00557300000000005	8E-12		0.116295	[0.082-0.15] unit increase	Affymetrix [16585745] (imputed)	N
913	chr19	43083042	43083043	rs45595831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.2		rs45595831-?	NR	8E-13				NR [~ 8900000] (imputed)	N
915	chr19	43283622	43283623	rs59559305	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	19q13.2	PSG8	rs59559305-A	NR	5E-9		4.112	[2.56-6.604]	Illumina [484621]	N
915	chr19	43374355	43374356	rs12460710	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.2	NR	rs12460710-?	NR	2E-12		7.025	NR z score increase	Illumina [at least 830937] (imputed)	N
915	chr19	43381617	43381618	rs8111762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs8111762-T	0.73859375	4E-68	(PSG3, 6444_15_3)	0.48368832	[0.43-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
915	chr19	43381617	43381618	rs8111762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs8111762-T	0.73859375	2E-15	(PSG5, 9314_9_3)	0.22077894	[0.17-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
915	chr19	43381617	43381618	rs8111762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.2	NR	rs8111762-T	0.73859375	1E-48	(PCDHGA1, 6457_50_3)	0.40171486	[0.35-0.45] unit decrease	Illumina [> 1000000] (imputed)	N
916	chr19	43406431	43406432	rs9179	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG5	5,361 Icelandic ancestry individuals	NA	19q13.31		rs9179-T	0.07399	1E-74		0.625158	[0.56-0.69] unit increase	Illumina [7506463] (imputed)	N
916	chr19	43406431	43406432	rs9179	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG3	5,367 Icelandic ancestry individuals	NA	19q13.31		rs9179-T	0.07399	2E-151		0.880454	[0.81-0.95] unit increase	Illumina [7506463] (imputed)	N
916	chr19	43406431	43406432	rs9179	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.31		rs9179-T	0.07399	9E-65		0.590747	[0.52-0.66] unit increase	Illumina [7506463] (imputed)	N
916	chr19	43431039	43431040	rs147957154	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.31	PSG7	rs147957154-T	0.132424	3E-9		0.023198	[0.016-0.031] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
916	chr19	43474698	43474699	rs7256699	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.31	NR	rs7256699-?	NR	2E-9		6.026	NR z score decrease	Illumina [at least 830937] (imputed)	N
917	chr19	43530003	43530004	rs2526714	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	19q13.31	NR	rs2526714-?	NR	3E-7				Affymetrix [28509962] (imputed)	N
917	chr19	43569208	43569209	rs78810802	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC004784.1	rs78810802-?	NR	4E-10		2.56767	[NR] unit decrease	Affymetrix [NR] (imputed)	N
917	chr19	43575351	43575352	rs76690543	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC004784.1	rs76690543-?	NR	4E-9	(male)	2.31252	[NR] unit decrease	Affymetrix [NR] (imputed)	N
917	chr19	43578448	43578449	rs144494943	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs144494943-C	0.02298	3E-140		1.51386	[1.4-1.63] unit increase	Illumina [7506463] (imputed)	N
917	chr19	43585207	43585208	rs148293206	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	19q13.31	NR	rs148293206-G		8E-6		0.386	[0.22-0.56] SD units increase	NR [10700000] (imputed)	N
917	chr19	43605575	43605576	rs60879169	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.31		rs60879169-C	0.08213	4E-9		0.201913	[0.13-0.27] unit increase	Illumina [7506463] (imputed)	N
917	chr19	43615834	43615835	rs2883534	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.31		rs2883534-T	0.2988	2E-90		0.404021	[0.36-0.44] unit increase	Illumina [7506463] (imputed)	N
917	chr19	43629696	43629696	rs3085826	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs3085826-ACTTCT	0.104	2E-50	(Pregnancy-specific beta-1-glycoprotein 3, PSG3.6444.15.3)	0.67	[0.57-0.77] unit increase	Affymetrix [10572788] (imputed)	N
917	chr19	43631321	43631322	rs10407242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG5	5,361 Icelandic ancestry individuals	NA	19q13.31		rs10407242-T	0.303	7E-61		0.327816	[0.29-0.37] unit increase	Illumina [7506463] (imputed)	N
917	chr19	43637688	43637689	rs11670206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs11670206-A	0.195	3E-29	(CD177 antigen, CD177.13116.25.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
918	chr19	43679087	43679088	rs2355433	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	PSG3	rs2355433-G	0.548	2E-163	(Pregnancy-specific beta-1-glycoprotein 3, PSG3.6444.15.3)	0.65	[0.61-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
918	chr19	43680050	43680051	rs1058285	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds (lobar)	2,035 European ancestry cases, 27 Chinese ancestry cases, 36 Malay ancestry cases, 81 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	19q13.31	PSG5	rs1058285-T	0.61	5E-7		1.21	NR	Affymetrix, Illumina [NR] (imputed)	N
918	chr19	43687769	43687770	rs10420089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs10420089-T	0.606875	3E-99	(PSG3, 6444_15_3)	0.5144115	[0.47-0.56] unit decrease	Illumina [> 1000000] (imputed)	N
918	chr19	43687769	43687770	rs10420089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs10420089-T	0.606875	3E-145	(PSG4, 5649_83_3)	0.60630053	[0.56-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
918	chr19	43687769	43687770	rs10420089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs10420089-T	0.606875	2E-259	(PCDHGA1, 6457_50_3)	0.7778419	[0.74-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
918	chr19	43687769	43687770	rs10420089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs10420089-T	0.606875	1E-16	(CD177, 13116_25_3)	0.20437546	[0.16-0.25] unit increase	Illumina [> 1000000] (imputed)	N
918	chr19	43696021	43696022	rs1138888	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	PSG4	rs1138888-A	0.624	5E-163	(Pregnancy-specific beta-1-glycoprotein 4, PSG4.5649.83.3)	0.67	[0.63-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
918	chr19	43703454	43703455	rs7249791	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG3	5,367 Icelandic ancestry individuals	NA	19q13.31		rs7249791-A	0.2344	2E-121		0.490823	[0.45-0.53] unit decrease	Illumina [7506463] (imputed)	N
918	chr19	43710000	43710002	rs35269301	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs35269301-G	0.623	1E-119	(Pregnancy-specific beta-1-glycoprotein 3, PSG3.6444.15.3)	0.62	[0.56-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
918	chr19	43711272	43711273	rs35143187	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	PSG9	rs35143187-C	0.673	1E-15	(Pregnancy-specific beta-1-glycoprotein 9, PSG9.9335.28.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
918	chr19	43720939	43720940	rs7257250	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs7257250-C	0.573	7E-117	(Pregnancy-specific beta-1-glycoprotein 4, PSG4.5649.83.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
918	chr19	43726894	43726895	rs4300765	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG4	5,366 Icelandic ancestry individuals	NA	19q13.31		rs4300765-A	0.3757	6E-287		0.631794	[0.6-0.67] unit increase	Illumina [7506463] (imputed)	N
918	chr19	43770511	43770512	rs552992303	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs552992303-C	0.117	2E-42	(Pregnancy-specific beta-1-glycoprotein 4, PSG4.5649.83.3)	0.6	[0.52-0.68] unit increase	Affymetrix [10572788] (imputed)	N
919	chr19	43792678	43792679	rs8107429	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs8107429-T	0.4486	1E-10		0.123082	[0.086-0.161] unit decrease	Illumina [7506463] (imputed)	N
919	chr19	43793255	43793256	rs7256311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG3	5,367 Icelandic ancestry individuals	NA	19q13.31		rs7256311-A	0.4485	2E-285		0.611786	[0.58-0.65] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43793255	43793256	rs7256311	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs7256311-C	0.552	4E-152	(Pregnancy-specific beta-1-glycoprotein 3, PSG3.6444.15.3)	0.61	[0.57-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
919	chr19	43793514	43793515	rs4028281	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.31		rs4028281-A	0.2116	6E-263		0.723138	[0.68-0.76] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43801907	43801908	rs114734229	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs114734229-A	0.0236	2E-129		1.44337	[1.33-1.56] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43806558	43806559	rs1005636	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs1005636-C	0.824	3E-79	(Pregnancy-specific beta-1-glycoprotein 4, PSG4.5649.83.3)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
919	chr19	43809520	43809521	rs74557322	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs74557322-C	0.02245	5E-9		0.372911	[0.25-0.5] unit decrease	Illumina [7506463] (imputed)	N
919	chr19	43815233	43815234	rs28836541	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG9	5,353 Icelandic ancestry individuals	NA	19q13.31		rs28836541-A	0.221	4E-13		0.156828	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43815233	43815234	rs28836541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	PSG9	rs28836541-G	0.7671875	1E-7	(PSG9, 9335_28_3)	0.15753631	[0.1-0.215] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43815233	43815234	rs28836541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs28836541-G	0.7671875	7E-25	(CD177, 13116_25_3)	0.2996061	[0.24-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43815233	43815234	rs28836541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs28836541-G	0.7671875	4E-14	(PCDHGA1, 6457_50_3)	0.22013773	[0.16-0.28] unit increase	Illumina [> 1000000] (imputed)	N
919	chr19	43815233	43815234	rs28836541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs28836541-G	0.7671875	1E-34	(PSG3, 6444_15_3)	0.36169374	[0.3-0.42] unit increase	Illumina [> 1000000] (imputed)	N
919	chr19	43815233	43815234	rs28836541	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs28836541-G	0.7671875	1E-15	(PSG4, 5649_83_3)	0.23444083	[0.18-0.29] unit increase	Illumina [> 1000000] (imputed)	N
919	chr19	43823064	43823065	rs62113694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs62113694-G	0.92703125	8E-11	(PSG4, 5649_83_3)	0.3069146	[0.21-0.4] unit increase	Illumina [> 1000000] (imputed)	N
919	chr19	43823064	43823065	rs62113694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs62113694-G	0.92703125	4E-26	(CD177, 13116_25_3)	0.4946342	[0.4-0.59] unit increase	Illumina [> 1000000] (imputed)	N
919	chr19	43823064	43823065	rs62113694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs62113694-G	0.92703125	2E-56	(PSG3, 6444_15_3)	0.7456689	[0.66-0.84] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43823064	43823065	rs62113694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs62113694-G	0.92703125	2E-21	(PCDHGA1, 6457_50_3)	0.44623706	[0.36-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43823064	43823065	rs62113694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs62113694-G	0.92703125	1E-31	(PSG5, 9314_9_3)	0.5491394	[0.46-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43825493	43825494	rs73554000	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	CD177	rs73554000-C	0.024	4E-116	(CD177 antigen, CD177.13116.25.3)	1.8	[1.64-1.96] unit increase	Affymetrix [10572788] (imputed)	N
919	chr19	43827125	43827126	rs73937410	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	CD177	rs73937410-T	0.97890625	1E-63	(CD177, 13116_25_3)	1.3912967	[1.23-1.55] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr19	43835075	43835076	rs62113716	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs62113716-A	0.086	3E-24	(CD177 antigen, CD177.13116.25.3)	0.45	[0.37-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
919	chr19	43844176	43844177	rs12978968	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs12978968-T	0.2862	4E-13		0.152366	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
919	chr19	43852499	43852500	rs118164011	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs118164011-G	0.032	6E-17		0.459245	[0.35-0.57] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43865319	43865320	rs587670082	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs587670082-A	0.632	2E-65	(CD177 antigen, CD177.13116.25.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
919	chr19	43865801	43865802	rs113094109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs113094109-A	0.04049	5E-35		0.596744	[0.5-0.69] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43865839	43865840	rs28464741	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs28464741-T	0.4176	2E-52		0.292045	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43865839	43865840	rs28464741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.31		rs28464741-?	NR	1E-8				NR [~ 8900000] (imputed)	N
919	chr19	43866448	43866449	rs78718189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs78718189-A	0.1017	1E-42		0.426559	[0.37-0.49] unit decrease	Illumina [7506463] (imputed)	N
919	chr19	43866448	43866449	rs78718189	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs78718189-A	0.108	5E-47	(CD177 antigen, CD177.13116.25.3)	0.56	[0.48-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
919	chr19	43869843	43869844	rs12973760	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs12973760-T	0.416	3E-47	(CD177 antigen, CD177.13116.25.3)	0.35	[0.31-0.39] unit increase	Affymetrix [10572788] (imputed)	N
919	chr19	43870304	43870305	rs12975477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHGA1	5,367 Icelandic ancestry individuals	NA	19q13.31		rs12975477-A	0.01202	4E-11		0.580383	[0.41-0.75] unit increase	Illumina [7506463] (imputed)	N
919	chr19	43870952	43870953	rs28606579	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	19q13.31	NR	rs28606579-T	NR	8E-6	(male)	0.1597	[0.09-0.23] unit increase	Illumina [11133794] (imputed)	N
919	chr19	43876313	43876314	rs6509089	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs6509089-T	0.591	3E-17	(CD177 antigen, CD177.13116.25.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
919	chr19	43900696	43900697	rs78530667	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD177	5,368 Icelandic ancestry individuals	NA	19q13.31		rs78530667-C	0.122	3E-63		0.483237	[0.43-0.54] unit decrease	Illumina [7506463] (imputed)	N
919	chr19	43900696	43900697	rs78530667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	NR	rs78530667-C	0.132	2E-72	(CD177 antigen, CD177.13116.25.3)	0.65	[0.57-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr19	43933724	43933725	rs34705275	25293881	Patel YM	2014-10-07	Cancer Epidemiol Biomarkers Prev	The contribution of common genetic variation to nicotine and cotinine glucuronidation in multiple ethnic/racial populations.	Cotinine glucuronidation	437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals	NA	19q13.31	TEX101, LYPD3	rs34705275-A	NR	4E-8		0.0337	[NR] unit increase	Illumina [11892802] (imputed)	N
920	chr19	43935169	43935170	rs2599469	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.31	NR	rs2599469-?	NR	2E-8				Affymetrix [NR]	N
920	chr19	43943645	43943646	rs140867630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.31		rs140867630-?	NR	5E-10				NR [~ 8900000] (imputed)	N
920	chr19	43959387	43959388	rs35681564	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	19q13.31	NR	rs35681564-G	NR	1E-5		0.104	[0.057-0.151] unit decrease	Illumina [6319684] (imputed)	N
920	chr19	43960113	43960114	rs7248167	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19q13.31	NR	rs7248167-C	0.217	8E-9		0.001568	[0.001-0.0021] unit decrease	Affymetrix [NR] (imputed)	N
920	chr19	43960113	43960114	rs7248167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.31		rs7248167-?	NR	5E-8				NR [~ 8900000] (imputed)	N
920	chr19	43969082	43969082	rs201638011	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	19q13.31	NR	rs201638011-TC		2E-6		0.0922	[0.054-0.13] SD units increase	NR [10700000] (imputed)	N
920	chr19	43989017	43989018	rs66849333	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.31	NR	rs66849333-T	0.0561	1E-6	(EA)	0.0693	[0.041-0.097] unit decrease	Illumina [~ 11800000] (imputed)	N
920	chr19	43991832	43991833	rs73043618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.31		rs73043618-T	NR	1E-9		0.0202	[0.014-0.027] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
920	chr19	43999198	43999199	rs59772657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs59772657-A	0.108238	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
920	chr19	44037369	44037370	rs2599459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.31		rs2599459-G	NR	1E-15		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
920	chr19	44037369	44037370	rs2599459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.31		rs2599459-?	NR	6E-27				NR [~ 8900000] (imputed)	N
921	chr19	44068705	44068706	rs2021092	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.31	XRCC1	rs2021092-T	0.813282	9E-10		0.0163211	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
921	chr19	44068705	44068706	rs2021092	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.31	XRCC1	rs2021092-T	0.813291	8E-13		0.018908	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
921	chr19	44072801	44072802	rs12611088	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	19q13.31	XRCC1	rs12611088-A	0.371	1E-6		0.07	[0.031-0.109] unit increase	Illumina [2316178] (imputed)	N
921	chr19	44072879	44072880	rs3213282	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.31	XRCC1	rs3213282-?	NR	3E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
921	chr19	44078228	44078233	rs3213250	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.31	XRCC1	rs3213250-?	NR	6E-10		0.02031766	[0.014-0.027] unit increase	Illumina [27896057] (imputed)	N
921	chr19	44085826	44085827	rs11407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs11407-T	NR	1E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr19	44085826	44085827	rs11407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs11407-T	NR	2E-11		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr19	44099762	44099763	rs304724	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.31	ZNF576	rs304724-T	0.5322	1E-10		0.0122	[0.0085-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
921	chr19	44122295	44122296	rs76287671	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	19q13.31	NR	rs76287671-C		7E-7		0.0938	[0.057-0.131] SD units decrease	NR [10700000] (imputed)	N
921	chr19	44140604	44140605	rs7251275	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.31	NR	rs7251275-?	NR	7E-6		4.49	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr19	44140604	44140605	rs7251275	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	19q13.31	NR	rs7251275-C	NR	8E-6		0.0752	[0.042-0.108] SD units decrease	NR [10700000] (imputed)	N
921	chr19	44153099	44153100	rs4760	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TRAIL R3 plasma levels	400 French ancestry individuals	NA	19q13.31		rs4760-A	NR	2E-13		0.32	[0.24-0.4] ng/mL decrease	Illumina [5201092] (imputed)	N
921	chr19	44153099	44153100	rs4760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.31		rs4760-G	NR	6E-72		0.0587	[0.052-0.065] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
921	chr19	44153099	44153100	rs4760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.31		rs4760-G	NR	2E-89		0.0654	[0.059-0.072] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
921	chr19	44153099	44153100	rs4760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.31		rs4760-G	NR	3E-10		0.0197	[0.014-0.026] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
921	chr19	44153099	44153100	rs4760	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19q13.31		rs4760-A	0.844	4E-12				Affymetrix [10369434] (imputed)	N
921	chr19	44153099	44153100	rs4760	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19q13.31		rs4760-A	0.844	4E-54				Affymetrix [10369434] (imputed)	N
921	chr19	44153099	44153100	rs4760	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19q13.31		rs4760-A	0.844	5E-21				Affymetrix [10369434] (imputed)	N
921	chr19	44153099	44153100	rs4760	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	19q13.31		rs4760-A	0.84	2E-125		0.345	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155738	2E-121		0.07130974	[0.065-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155777	1E-16		0.025734141	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155723	1E-58		0.049169544	[0.043-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155715	9E-136		0.07554962	[0.07-0.082] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155797	2E-47		0.044188354	[0.038-0.05] unit increase	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155731	6E-37		0.038606077	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155723	3E-16		0.024823606	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.15572	5E-11		0.020001581	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.31	PLAUR	rs4760-G	0.155817	1E-11		0.020676255	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs4760-G	0.147921	2E-158				Affymetrix, Illumina [24649327] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.31	NR	rs4760-G	0.152719	2E-161		0.070234	[0.065-0.075] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs4760-G	0.148643	3E-169				Affymetrix, Illumina [23114412] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.31	NR	rs4760-G	0.153372	1E-171		0.075213	[0.07-0.08] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs4760-G	0.151121	1E-10				Affymetrix, Illumina [19905671] (imputed)	N
921	chr19	44153099	44153100	rs4760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.31	NR	rs4760-G	0.155588	6E-12		0.019462	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
921	chr19	44153099	44153100	rs4760	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-A	0.844628	4E-13		0.0191065	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
921	chr19	44153099	44153100	rs4760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.31		rs4760-?	NR	7E-107				NR [~ 8900000] (imputed)	N
921	chr19	44153099	44153100	rs4760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.31		rs4760-?	NR	3E-11				NR [~ 8900000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	19q13.31	NR	rs4760-G		6E-6		0.0984	[0.057-0.14] SD units increase	NR [10700000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.1569	5E-59		0.07980459	[0.07-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.1569	5E-67		0.08518872	[0.076-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	5E-68		0.08592477	[0.076-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	2E-33		0.0591609	[0.05-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	1E-9		0.02979991	[0.02-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.1569	1E-68		0.08614908	[0.077-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	2E-63		0.08309869	[0.073-0.093] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.1569	6E-27		0.05259516	[0.043-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.1569	9E-23		0.04807686	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	1E-37		0.06297125	[0.053-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19q13.31	PLAUR	rs4760-G	0.157	1E-66		0.08512938	[0.075-0.095] unit decrease	Affymetrix [~ 2500000] (imputed)	N
921	chr19	44153099	44153100	rs4760	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19q13.31	NR	rs4760-?		4E-61	(TNFRSF10C)	0.7659	[NR] unit decrease	Illumina [NR]	N
921	chr19	44156471	44156472	rs2302524	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLAUR	5,364 Icelandic ancestry individuals	NA	19q13.31		rs2302524-C	0.181	3E-19		0.208653	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
921	chr19	44156471	44156472	rs2302524	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	19q13.31		rs2302524-T	0.84	5E-39		0.1416	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
921	chr19	44156471	44156472	rs2302524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs2302524-T	0.81984375	8E-13	(PLAUR, 2652_15_1)	0.21992853	[0.16-0.28] unit increase	Illumina [> 1000000] (imputed)	N
921	chr19	44156471	44156472	rs2302524	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.31	NR	rs2302524-T	0.81984375	7E-10	(CD177, 13116_25_3)	0.19642365	[0.13-0.26] unit increase	Illumina [> 1000000] (imputed)	N
921	chr19	44169521	44169522	rs399145	34706549	Olson NC	2021-10-28	Circ Genom Precis Med	Soluble Urokinase Plasminogen Activator Receptor: Genetic Variation and Cardiovascular Disease Risk in Blacks.	Soluble urokinase plasminogen activator receptor levels	3,492 African American individuals	NA	19q13.31		rs399145-C	0.11	2E-78		0.73	[0.65-0.81] pg/mL increase	NR [21944818]	N
922	chr19	44174440	44174441	rs4251805	34706549	Olson NC	2021-10-28	Circ Genom Precis Med	Soluble Urokinase Plasminogen Activator Receptor: Genetic Variation and Cardiovascular Disease Risk in Blacks.	Soluble urokinase plasminogen activator receptor levels	3,492 African American individuals	NA	19q13.31		rs4251805-T	0.08	2E-14		0.36	[-0.46-0.26] pg/mL decrease	NR [21944818]	N
922	chr19	44175981	44175982	rs36229204	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.31	PLAUR	rs36229204-T	0.038	5E-13	(Urokinase-type plasminogen activator, PLAU.4158.54.2)	0.48	[0.34-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
922	chr19	44178954	44178955	rs73935023	34706549	Olson NC	2021-10-28	Circ Genom Precis Med	Soluble Urokinase Plasminogen Activator Receptor: Genetic Variation and Cardiovascular Disease Risk in Blacks.	Soluble urokinase plasminogen activator receptor levels	3,492 African American individuals	NA	19q13.31		rs73935023-C	0.04	1E-16		0.55	[-0.69-0.41] pg/mL decrease	NR [21944818]	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	3E-8		0.0823664	[0.053-0.111] unit decrease	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	1E-8		0.0861141	[0.056-0.116] unit decrease	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	2E-8		0.0853241	[0.056-0.115] unit decrease	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	2E-8		0.0860557	[0.056-0.116] unit decrease	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	5E-8		0.0820377	[0.053-0.111] unit decrease	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	3E-9		0.0889354	[0.06-0.118] unit increase	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	9E-9		0.0856143	[0.056-0.115] unit increase	NR [11722792] (imputed)	N
922	chr19	44182395	44182396	rs151142848	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs151142848-T	0.981387	2E-8		0.0853013	[0.056-0.115] unit increase	NR [11722792] (imputed)	N
922	chr19	44194458	44194459	rs191030430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs191030430-T	0.981156	1E-10		0.0997884	[0.069-0.13] unit increase	NR [11722792] (imputed)	N
922	chr19	44194458	44194459	rs191030430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs191030430-T	0.981156	2E-11		0.104042	[0.074-0.135] unit increase	NR [11722792] (imputed)	N
922	chr19	44194458	44194459	rs191030430	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs191030430-T	0.981156	3E-8		0.0861402	[0.056-0.116] unit increase	NR [11722792] (imputed)	N
922	chr19	44214739	44214740	rs10410645	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	19q13.31		rs10410645-T	0.072	2E-12		0.1013	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
922	chr19	44223112	44223113	rs11555891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs11555891-A	NR	4E-11		0.0547	[0.038-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr19	44223112	44223113	rs11555891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs11555891-A	NR	6E-16		0.067	[0.051-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr19	44235516	44235517	rs9612	28109725	Fuchs O	2017-01-18	J Allergy Clin Immunol	6q12 and 11p14 variants are associated with postnatal exhaled nitric oxide levels and respiratory symptoms.	Exhaled nitric oxide output	229 European ancestry infants		19q13.31	NR	rs9612-C	NR	5E-6	(adjusted)	0.1	nL/s decrease	Illumina [567864]	N
922	chr19	44242700	44242705	rs10597028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19q13.31		rs10597028-C	0.103335	2E-9		0.0359488	[0.024-0.048] unit decrease	Illumina [13476266] (imputed)	N
922	chr19	44260928	44260929	rs61387190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.31		rs61387190-T	NR	9E-20		0.0265	[0.021-0.032] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
922	chr19	44260928	44260929	rs61387190	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19q13.31		rs61387190-C	0.842	1E-8				Affymetrix [10369434] (imputed)	N
922	chr19	44260928	44260929	rs61387190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.31	SMG9	rs61387190-T	0.157475	2E-25		0.03164038	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44260928	44260929	rs61387190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs61387190-T	0.154111	2E-33				Affymetrix, Illumina [23472807] (imputed)	N
922	chr19	44260928	44260929	rs61387190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.31	NR	rs61387190-T	0.157437	6E-34		0.031603	[0.027-0.037] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
922	chr19	44260928	44260929	rs61387190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.31		rs61387190-?	NR	2E-8				NR [~ 8900000] (imputed)	N
922	chr19	44260928	44260929	rs61387190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19q13.31	SMG9	rs61387190-T	0.1574	1E-12		0.0352164	[0.026-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44262544	44262545	rs346522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	19q13.31	NR	rs346522-A	0.862661	9E-14		0.0433	[0.032-0.055] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
922	chr19	44262544	44262545	rs346522	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	19q13.31	SMG9, KCNN4	rs346522-?	NR	2E-8		0.03464	[0.022-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
922	chr19	44262544	44262545	rs346522	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	19q13.31	SMG9, KCNN4	rs346522-?	NR	5E-12		0.04297	[0.031-0.055] unit increase novel	Illumina [6108953] (imputed)	N
922	chr19	44268324	44268325	rs1058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.31	KCNN4	rs1058-G	0.218831	8E-23		0.026378809	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44268324	44268325	rs1058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.31	KCNN4	rs1058-G	0.218818	2E-10		0.016969232	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44268552	44268555	rs767674729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.31		rs767674729-T	NR	2E-13		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
922	chr19	44268552	44268555	rs767674729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.31		rs767674729-T	NR	4E-16		0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
922	chr19	44269630	44269631	rs347515	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	19q13.31	intergenic	rs347515-T	0.04	9E-6		0.362	[0.2-0.52] unit increase	Illumina [6380737] (imputed)	N
922	chr19	44273515	44273516	rs347519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.31	KCNN4	rs347519-C	0.22014	8E-11		0.017649734	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44273515	44273516	rs347519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.31	KCNN4	rs347519-C	0.22023	2E-20		0.024820354	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44273515	44273516	rs347519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.31		rs347519-?	NR	2E-21				NR [~ 8900000] (imputed)	N
922	chr19	44278778	44278779	rs649540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.31	KCNN4	rs649540-G	0.190482	3E-10		0.018102836	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44278778	44278779	rs649540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.31		rs649540-?	NR	5E-12				NR [~ 8900000] (imputed)	N
922	chr19	44278780	44278781	rs563995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.31		rs563995-A	NR	6E-15		0.0204	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
922	chr19	44278780	44278781	rs563995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19q13.31		rs563995-A	NR	1E-35		0.0325	[0.027-0.038] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
922	chr19	44278780	44278781	rs563995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	19q13.31		rs563995-A	0.113946	4E-17		0.0544018	[0.042-0.067] unit increase	Illumina [13477028] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.31	KCNN4	rs563995-A	0.227794	1E-13		0.01974352	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.31	KCNN4	rs563995-A	0.22778	6E-15		0.0197371	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.31	KCNN4	rs563995-A	0.227806	6E-43		0.0365484	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs563995-A	0.213364	5E-24				Affymetrix, Illumina [24332387] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.31	NR	rs563995-A	0.228768	1E-25		0.023703	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs563995-A	0.216071	2E-30				Affymetrix, Illumina [24246363] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.31	NR	rs563995-A	0.228764	4E-27		0.023953	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs563995-A	0.213491	8E-71				Affymetrix, Illumina [21126107] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.31	NR	rs563995-A	0.228051	7E-62		0.040182	[0.035-0.045] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs563995-A	0.214217	1E-27				Affymetrix, Illumina [24653286] (imputed)	N
922	chr19	44278780	44278781	rs563995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.31	NR	rs563995-A	0.228703	2E-28		0.024952	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
922	chr19	44278780	44278781	rs563995	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.31	KCNN4	rs563995-A		2E-16		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
922	chr19	44278780	44278781	rs563995	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.31	KCNN4	rs563995-A	0.2282	2E-9		0.02572105	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44278780	44278781	rs563995	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	19q13.31	KCNN4	rs563995-A	0.2281	1E-27		0.04561461	[0.037-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44278780	44278781	rs563995	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.31	KCNN4	rs563995-A	0.2282	4E-9		0.02525654	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44280836	44280837	rs514328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.31		rs514328-?	NR	6E-9				NR [~ 8900000] (imputed)	N
922	chr19	44281824	44281824	rs111402121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.31	KCNN4	rs111402121-CTCTT	0.375191	3E-12		0.016274787	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr19	44281897	44281898	rs11879798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19q13.31		rs11879798-G	0.624	4E-36				Affymetrix [10369434] (imputed)	N
922	chr19	44281897	44281898	rs11879798	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19q13.31		rs11879798-G	0.624	8E-19				Affymetrix [10369434] (imputed)	N
922	chr19	44281897	44281898	rs11879798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.31	KCNN4	rs11879798-A	0.3759	8E-38		0.04723772	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44281897	44281898	rs11879798	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.31	KCNN4	rs11879798-A	0.3759	7E-35		0.04540951	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44282528	44282529	rs56344893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.31	KCNN4	rs56344893-A	0.375229	2E-10		0.0145892175	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44282528	44282529	rs56344893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.31	KCNN4	rs56344893-A	0.375184	4E-86		0.04503528	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr19	44282528	44282529	rs56344893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.31	KCNN4	rs56344893-A	0.3753	1E-37		0.04736383	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
922	chr19	44283030	44283031	rs56681946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs56681946-T	0.627783	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
922	chr19	44283030	44283031	rs56681946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.31	NR	rs56681946-T	0.624092	1E-15		0.015893	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
922	chr19	44283231	44283232	rs1685191	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.31	NR	rs1685191-T	0.5647	4E-20	(EA)	0.0586	[0.046-0.071] unit decrease	Illumina [~ 11800000] (imputed)	N
922	chr19	44283842	44283843	rs62116961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.31	KCNN4	rs62116961-C	0.376468	7E-13		0.016717216	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
922	chr19	44283842	44283843	rs62116961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.31	KCNN4	rs62116961-C	0.375984	6E-68		0.039992742	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
922	chr19	44283842	44283843	rs62116961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs62116961-C	0.337306	9E-120				Affymetrix, Illumina [23467995] (imputed)	N
922	chr19	44286512	44286513	rs3760982	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	19q13.31		rs3760982-A	NR	2E-14		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
922	chr19	44286512	44286513	rs3760982	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.31	KCCN4, LYPD5	rs3760982-A	0.46	1E-16	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
922	chr19	44286512	44286513	rs3760982	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	19q13.31	NR	rs3760982-A	0.46	5E-8		1.08	[1.05-1.12] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
922	chr19	44286512	44286513	rs3760982	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	19q13.31	NR	rs3760982-A	0.46	9E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 14000000] (imputed)	N
922	chr19	44286512	44286513	rs3760982	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	19q13.31	NR	rs3760982-A	0.46	8E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 11600000] (imputed)	N
922	chr19	44286512	44286513	rs3760982	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	19q13.31	C19orf61, KCNN4, LYPD5, ZNF283	rs3760982-A	0.46	2E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
922	chr19	44293277	44293278	rs8104447	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	19q13.31		rs8104447-T	0.6	2E-10		0.052	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	6E-9		0.0645948	[0.043-0.086] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	5E-8		0.059694	[0.038-0.081] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	4E-8		0.0611192	[0.039-0.083] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	3E-8		0.0617759	[0.04-0.084] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	2E-8		0.0624655	[0.041-0.084] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs62116988-G	0.964425	2E-8		0.0622415	[0.04-0.084] unit increase	NR [11722792] (imputed)	N
922	chr19	44296688	44296689	rs62116988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs62116988-A	NR	2E-22		0.0638	[0.051-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr19	44296688	44296689	rs62116988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs62116988-A	NR	2E-33		0.079	[0.066-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr19	44296688	44296689	rs62116988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs62116988-A	NR	1E-44		0.0921	[0.079-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr19	44299891	44299892	rs349045	25003214	Davis OS	2014-07-08	Nat Commun	The correlation between reading and mathematics ability at age twelve has a substantial genetic component.	Reading or mathematical ability	up to 2,794 European ancestry unrelated members of twin pairs	2,153 European ancestry individuals	19q13.31	LYPD5, ZNF45, ZNF404	rs349045-T	0.52	8E-9	(reading)	0.132	[0.087-0.177] unit decrease	Affymetrix [1588650] (imputed)	N
922	chr19	44301607	44301608	rs62116990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs62116990-G	0.571285	6E-10				Affymetrix, Illumina [22063850] (imputed)	N
922	chr19	44301607	44301608	rs62116990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.31	NR	rs62116990-G	0.56452	3E-11		0.012598	[0.0089-0.0163] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
923	chr19	44304187	44304188	rs56103707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19q13.31		rs56103707-A	0.126661	3E-8		0.0369538	[0.024-0.05] unit decrease	Illumina [13471440] (imputed)	N
923	chr19	44337802	44337803	rs7255083	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	19q13.31	NR	rs7255083-T	0.57	2E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [7369691] (imputed)	N
923	chr19	44337802	44337803	rs7255083	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	19q13.31	NR	rs7255083-T	0.57	2E-7		0.01	[0.0061-0.0139] unit decrease	NR [7369691] (imputed)	N
923	chr19	44338839	44338840	rs79371986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.31		rs79371986-?	NR	1E-8				NR [~ 8900000] (imputed)	N
923	chr19	44338839	44338840	rs79371986	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.31		rs79371986-?	NR	2E-9		0.0156993	[0.011-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
923	chr19	44358041	44358042	rs4802201	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	19q13.31	NR	rs4802201-?		4E-6		0.48	[0.35-0.66]	Illumina [539473] (imputed)	N
923	chr19	44371209	44371210	rs8106090	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	19q13.31	ZNF404	rs8106090-?	0.492	3E-8		1.02	[1.01-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
923	chr19	44400411	44400412	rs73036721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs73036721-T	NR	4E-13		0.071	[0.052-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr19	44400411	44400412	rs73036721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs73036721-T	NR	3E-23		0.0974	[0.078-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr19	44400411	44400412	rs73036721	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs73036721-T	NR	8E-36		0.1228	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr19	44421006	44421007	rs446674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.31		rs446674-A	NR	2E-9		0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
923	chr19	44423569	44423570	rs375066	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.31	NR	rs375066-C	0.5141	2E-14	(EA)	0.0474	[0.035-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
924	chr19	44436732	44436733	rs8100011	32363570	Giri AK	2020-05-04	Mol Genet Genomics	Multifaceted genome-wide study identifies novel regulatory loci in SLC22A11 and ZNF45 for body mass index in Indians.	Body mass index	1,142 Indo-European Indian ancestry individuals	6,117 Indo-European Indian ancestry individuals	19q13.31	ZNF45	rs8100011-A	0.55	1E-7		0.44	[0.28-0.6] unit increase	Illumina [537246]	N
924	chr19	44437764	44437765	rs118145918	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	19q13.31	ZNF45, ZNF221	rs118145918-T	0.024	3E-8	(YKL-40)	32.162	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
924	chr19	44497566	44497567	rs8104126	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.31	NR	rs8104126-C	0.01742	3E-11	(ACSS3)	0.1757	NR unit increase	Illumina [1671387] (imputed)	N
924	chr19	44497566	44497567	rs8104126	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.31	NR	rs8104126-C	0.01742	2E-9	(CLYBL)	0.08753	NR unit increase	Illumina [1671387] (imputed)	N
924	chr19	44498949	44498950	rs78023654	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.31	NR	rs78023654-C	0.02613	1E-8	(ACSS3)	0.1287	NR unit increase	Illumina [1671387] (imputed)	N
924	chr19	44499686	44499687	rs445265	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.31	NR	rs445265-C	0.0122	2E-8	(ACTN4)	0.3259	NR unit increase	Illumina [1671387] (imputed)	N
924	chr19	44503670	44503672	rs149339318	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	19q13.31		rs149339318-?	NR	8E-8				Illumina [1084750]	N
924	chr19	44511388	44511389	rs2191566	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	19q13.31	ZNF230	rs2191566-G	0.28	4E-7		1.52	[1.20-1.70]	Affymetrix [307944]	N
925	chr19	44568191	44568192	rs8106663	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA		ZNF223	rs8106663-T	NR	9E-7		0.745581	[0.45-1.04] unit increase	NR [9955952] (imputed)	N
925	chr19	44596803	44596804	rs72480795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs72480795-G	NR	5E-9		0.0207	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
925	chr19	44596803	44596804	rs72480795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs72480795-G	NR	6E-13		0.0255	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
925	chr19	44596803	44596804	rs72480795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs72480795-G	NR	1E-13		0.0263	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
925	chr19	44613118	44613119	rs6509141	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19q13.31	NR	rs6509141-C	0.139	6E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
925	chr19	44614207	44614208	rs2061333	19118814	Beecham GW	2009-01-03	Am J Hum Genet	Genome-wide association study implicates a chromosome 12 risk locus for late-onset Alzheimer disease.	Alzheimer's disease	492 European ancestry cases, 496 European ancestry controls	238 European ancestry cases, 220 European ancestry controls	19q13.31	ZNF224	rs2061333-?	NR	2E-6				Illumina [~ 2500000] (imputed)	N
925	chr19	44675800	44675801	rs17657025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs17657025-C	NR	4E-34		0.0538	[0.045-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr19	44675800	44675801	rs17657025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs17657025-C	NR	8E-51		0.0663	[0.058-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr19	44675800	44675801	rs17657025	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs17657025-C	NR	8E-72		0.0795	[0.071-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr19	44758858	44758859	rs76351657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs76351657-C	NR	1E-10		0.0676	[0.047-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr19	44758858	44758859	rs76351657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs76351657-C	NR	2E-16		0.0862	[0.066-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr19	44758858	44758859	rs76351657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs76351657-C	NR	4E-23		0.104	[0.083-0.125] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr19	44789886	44789887	rs118092853	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.31		rs118092853-?	NR	6E-8				NR [~ 8900000] (imputed)	N
926	chr19	44805947	44805948	rs74796695	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs74796695-T	NR	3E-9		0.121	unit increase	Affymetrix [at least 7091467] (imputed)	N
926	chr19	44805947	44805948	rs74796695	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs74796695-T	0.987	6E-9	(EA)	0.121	unit increase	Affymetrix [at least 7091467] (imputed)	N
927	chr19	44836125	44836126	rs8107369	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19q13.31	NR	rs8107369-T	0.171	2E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
927	chr19	44845758	44845759	rs2722733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs2722733-G	NR	5E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44845758	44845759	rs2722733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.31	NR	rs2722733-G	NR	5E-10		0.0176	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
927	chr19	44845758	44845759	rs2722733	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs2722733-G	NR	2E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44870771	44870772	rs6509155	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.31	NR	rs6509155-C	0.716108	5E-14		0.0162819	[0.012-0.021] unit increase	NR [NR]	N
927	chr19	44873531	44873532	rs2571077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs2571077-T	NR	4E-25		0.0382	[0.031-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44873531	44873532	rs2571077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs2571077-T	NR	6E-38		0.0475	[0.04-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44873531	44873532	rs2571077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs2571077-T	NR	2E-51		0.0557	[0.048-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44875987	44875988	rs2571082	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	19q13.31	NR	rs2571082-G	0.72	7E-6		1.76	[1.38-2.25]	Illumina [17125421] (imputed)	N
927	chr19	44888275	44888276	rs4142248	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		19q13.31	ZNF285A	rs4142248-?	0.058	3E-15			[NR]	Affymetrix, Illumina [152234]	N
927	chr19	44894069	44894070	rs62116778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs62116778-T	NR	5E-106		0.1366	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44894069	44894070	rs62116778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs62116778-T	NR	1E-164		0.1709	[0.16-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44894069	44894070	rs62116778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs62116778-T	NR	9E-244		0.2089	[0.2-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44894069	44894070	rs62116778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.31	NR	rs62116778-T	NR	2E-9		0.0395	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
927	chr19	44901556	44901557	rs2722651	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.31	ZNF229	rs2722651-?	NR	2E-7	(methionine)	0.28981137	[0.18-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
927	chr19	44906022	44906023	rs17657696	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	19q13.31	NR	rs17657696-?	NR	4E-7	(AA)	1.0923	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
927	chr19	44932971	44932972	rs1434579	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	19q13.31	NR	rs1434579-?	0.06	4E-6		1.46	[1.20-1.70]	Affymetrix [> 333754] (imputed)	N
927	chr19	44938869	44938870	rs745903616	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.31	TOMM40, APOE	rs745903616-A	0.0013	8E-6		1.61	[1.30-1.98]	Affymetrix, Illumina [~ 27000000] (imputed)	N
927	chr19	44957309	44957310	rs62116303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs62116303-G	NR	5E-37		0.0447	[0.038-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44957309	44957310	rs62116303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs62116303-G	NR	4E-58		0.0565	[0.05-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
927	chr19	44957309	44957310	rs62116303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs62116303-G	NR	2E-83		0.0683	[0.061-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	44970934	44970935	rs644148	18957941	Terracciano A	2008-11-24	Mol Psychiatry	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 individuals	19q13.31	ZNF180	rs644148-G	0.50	9E-7	(openness)	0.15	[NR] s.d. increase	Affymetrix [362129]	N
928	chr19	44970934	44970935	rs644148	18957941	Terracciano A	2008-11-24	Mol Psychiatry	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 individuals	19q13.31	ZNF180	rs644148-G	0.50	8E-6	(extraversion)	0.14	[NR] s.d. increase	Affymetrix [362129]	N
928	chr19	45002821	45002822	rs79967676	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs79967676-G	NR	1E-9		0.0228	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45020858	45020859	rs80257887	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.31	NR	rs80257887-A	NR	2E-13		0.0476	[0.035-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45020858	45020859	rs80257887	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	CEACAM20	rs80257887-A	0.03562	1E-12		7.089606	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
928	chr19	45020858	45020859	rs80257887	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.31	NR	rs80257887-?	NR	6E-9				Affymetrix [7795605] (imputed)	N
928	chr19	45020858	45020859	rs80257887	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs80257887-?	NR	3E-10				Affymetrix [7795605] (imputed)	N
928	chr19	45021038	45021039	rs200628672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs200628672-A	NR	1E-11		0.336	[0.24-0.43] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45021038	45021039	rs200628672	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs200628672-A	NR	1E-19		0.45	[0.35-0.55] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45022559	45022560	rs62116889	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.31	ZNF180	rs62116889-T	0.931708	2E-33		0.04951	[0.041-0.058] unit increase	Affymetrix [NR] (imputed)	N
928	chr19	45028111	45028112	rs35443082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs35443082-C	NR	2E-43		0.0727	[0.062-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45028111	45028112	rs35443082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs35443082-C	NR	1E-63		0.0886	[0.078-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45028111	45028112	rs35443082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs35443082-C	NR	1E-88		0.1053	[0.095-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-16		0.0716598	[0.055-0.089] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-16		0.0716598	[0.055-0.089] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-14		0.0678022	[0.05-0.085] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-14		0.0678022	[0.05-0.085] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-16		0.073167	[0.056-0.091] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-16		0.073167	[0.056-0.091] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-9		0.0527152	[0.036-0.07] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-9		0.0527152	[0.036-0.07] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-20		0.0821789	[0.064-0.1] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-20		0.0821789	[0.064-0.1] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-19		0.0796497	[0.062-0.097] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-19		0.0796497	[0.062-0.097] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-19		0.0800831	[0.063-0.097] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-19		0.0800831	[0.063-0.097] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0764671	[0.058-0.095] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0764671	[0.058-0.095] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-13		0.0682254	[0.05-0.086] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-13		0.0682254	[0.05-0.086] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0758146	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0758146	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-16		0.0749143	[0.057-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-16		0.0749143	[0.057-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-16		0.0716561	[0.054-0.089] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-16		0.0716561	[0.054-0.089] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-10		0.0574193	[0.04-0.075] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-10		0.0574193	[0.04-0.075] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-11		0.0602909	[0.043-0.078] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-11		0.0602909	[0.043-0.078] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-14		0.0687587	[0.051-0.087] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-14		0.0687587	[0.051-0.087] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0598291	[0.042-0.077] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0598291	[0.042-0.077] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947188	4E-8		0.0471775	[0.03-0.064] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947188	4E-8		0.0471775	[0.03-0.064] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-10		0.0581812	[0.04-0.076] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-10		0.0581812	[0.04-0.076] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-12		0.0622873	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-12		0.0622873	[0.045-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0606464	[0.043-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0606464	[0.043-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-17		0.0730996	[0.056-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-17		0.0730996	[0.056-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-12		0.0609122	[0.043-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-12		0.0609122	[0.043-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-9		0.0519209	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-9		0.0519209	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947128	7E-11		0.0602965	[0.042-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947128	7E-11		0.0602965	[0.042-0.078] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-10		0.0573948	[0.039-0.076] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-10		0.0573948	[0.039-0.076] unit decrease	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-23		0.0912124	[0.073-0.109] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-23		0.0912124	[0.073-0.109] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-15		0.0740619	[0.056-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-15		0.0740619	[0.056-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.0782432	[0.06-0.096] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.0782432	[0.06-0.096] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0803929	[0.062-0.098] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0803929	[0.062-0.098] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-14		0.0666717	[0.049-0.084] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-14		0.0666717	[0.049-0.084] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-17		0.0764939	[0.059-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-17		0.0764939	[0.059-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-8		0.05218	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-8		0.05218	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-16		0.0708477	[0.054-0.088] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-16		0.0708477	[0.054-0.088] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-17		0.0743006	[0.057-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-17		0.0743006	[0.057-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0521843	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0521843	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-9		0.051951	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-9		0.051951	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0554789	[0.038-0.073] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0554789	[0.038-0.073] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-11		0.0569844	[0.04-0.074] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	7E-11		0.0569844	[0.04-0.074] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-13		0.0632034	[0.046-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-13		0.0632034	[0.046-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-26		0.0963827	[0.078-0.114] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-26		0.0963827	[0.078-0.114] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-20		0.0848175	[0.067-0.103] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-20		0.0848175	[0.067-0.103] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-19		0.0812279	[0.063-0.099] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-19		0.0812279	[0.063-0.099] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-20		0.0848151	[0.067-0.103] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-20		0.0848151	[0.067-0.103] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-16		0.0726781	[0.055-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-16		0.0726781	[0.055-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-12		0.0644326	[0.046-0.083] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-12		0.0644326	[0.046-0.083] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0624504	[0.044-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0624504	[0.044-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-13		0.0664721	[0.048-0.084] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-13		0.0664721	[0.048-0.084] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-13		0.0667482	[0.049-0.085] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	4E-13		0.0667482	[0.049-0.085] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-15		0.0723329	[0.054-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-15		0.0723329	[0.054-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0802976	[0.062-0.098] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0802976	[0.062-0.098] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0755755	[0.059-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0755755	[0.059-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-8		0.0504322	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-8		0.0504322	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0515098	[0.035-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0515098	[0.035-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.076824	[0.059-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.076824	[0.059-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0562515	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0562515	[0.039-0.074] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0622122	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0622122	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-12		0.0630472	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-12		0.0630472	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0618069	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-11		0.0618069	[0.044-0.08] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0756626	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-16		0.0756626	[0.058-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-15		0.0720166	[0.054-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-15		0.0720166	[0.054-0.09] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0778794	[0.06-0.095] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-18		0.0778794	[0.06-0.095] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-18		0.0752566	[0.058-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-18		0.0752566	[0.058-0.092] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-13		0.0638418	[0.046-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	9E-13		0.0638418	[0.046-0.081] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-11		0.0589682	[0.041-0.077] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	8E-11		0.0589682	[0.041-0.077] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0520603	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-9		0.0520603	[0.035-0.069] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-8		0.0518635	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-8		0.0518635	[0.034-0.07] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-15		0.0713537	[0.054-0.089] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-15		0.0713537	[0.054-0.089] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-18		0.0790448	[0.062-0.097] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-18		0.0790448	[0.062-0.097] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-8		0.0506055	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	2E-8		0.0506055	[0.033-0.068] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-16		0.0746669	[0.057-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	6E-16		0.0746669	[0.057-0.093] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0578571	[0.04-0.076] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	3E-10		0.0578571	[0.04-0.076] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-14		0.0695059	[0.051-0.088] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-14		0.0695059	[0.051-0.088] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.077835	[0.06-0.096] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-17		0.077835	[0.06-0.096] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-18		0.0769532	[0.06-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	5E-18		0.0769532	[0.06-0.094] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-12		0.0651766	[0.047-0.083] unit increase	NR [11722792] (imputed)	N
928	chr19	45030908	45030908	rs141810580	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.31		rs141810580-A,rs141810580-A	0.947192	1E-12		0.0651766	[0.047-0.083] unit increase	NR [11722792] (imputed)	N
928	chr19	45034922	45034923	rs79860339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs79860339-C	NR	4E-12		0.0462	[0.033-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
928	chr19	45042494	45042495	rs17714646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs17714646-C	NR	6E-10		0.0163	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45043258	45043259	rs930461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs930461-A	NR	2E-12		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45046351	45046352	rs1661178	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	19q13.31	NR	rs1661178-?	NR	3E-6		2.528	[1.51-3.54] unit decrease	Illumina [498648]	N
928	chr19	45048857	45048858	rs75161053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs75161053-A	NR	5E-10		0.035	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45048857	45048858	rs75161053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs75161053-A	NR	3E-16		0.0462	[0.035-0.057] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45048857	45048858	rs75161053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs75161053-A	NR	1E-22		0.0554	[0.044-0.066] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45048857	45048858	rs75161053	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	CEACAM22P	rs75161053-A	0.04757	2E-12		7.0672655	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
928	chr19	45048857	45048858	rs75161053	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs75161053-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
928	chr19	45053137	45053138	rs73046410	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.31		rs73046410-A	0.4646	6E-8		39.408703	z score increase	NR [6814003]	N
928	chr19	45053137	45053138	rs73046410	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs73046410-?	NR	2E-10				Affymetrix [7795605] (imputed)	N
928	chr19	45061071	45061072	rs118104581	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.31	NR	rs118104581-?	NR	4E-8				Affymetrix [7795605] (imputed)	N
928	chr19	45061071	45061072	rs118104581	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs118104581-?	NR	4E-8				Affymetrix [7795605] (imputed)	N
928	chr19	45064434	45064435	rs1727757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs1727757-G	NR	7E-23		0.0357	[0.029-0.043] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45064434	45064435	rs1727757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs1727757-G	NR	3E-33		0.0436	[0.037-0.051] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45064434	45064435	rs1727757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs1727757-G	NR	1E-49		0.0539	[0.047-0.061] unit increase	Affymetrix [9000000] (imputed)	N
928	chr19	45071069	45071070	rs11083742	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs11083742-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
928	chr19	45078885	45078886	rs846879	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.31	NR	rs846879-G	0.37527	2E-16		0.0174866	[0.013-0.022] unit increase	NR [NR]	N
928	chr19	45080064	45080065	rs846876	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	CEACAM22P	rs846876-C	0.3755	1E-14		7.715924	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
929	chr19	45101334	45101335	rs2854640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs2854640-A	NR	7E-11		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45101335	45101336	rs74260502	28155865	Chen H	2017-02-03	Sci Rep	A Genome-Wide Association Study Identifies Genetic Variants Associated with Mathematics Ability.	Mathematical ability	998 Han Chinese ancestry children	599 Han Chinese ancestry children	19q13.31	NR	rs74260502-T	0.04	6E-7		4.37	[2.65-6.09] unit decrease	Affymetrix [at least 1108437]	N
929	chr19	45105084	45105085	rs73048316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.31		rs73048316-A	0.961697	4E-8		0.0568046	[0.036-0.077] unit decrease	NR [11722792] (imputed)	N
929	chr19	45116065	45116066	rs79385701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs79385701-C	NR	2E-10		0.0412	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45125217	45125218	rs11083743	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	IGSF23	rs11083743-C	0.2682	1E-9		6.0971603	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
929	chr19	45128824	45128825	rs846858	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		19q13.31	IGSF23	rs846858-A	0.272	3E-6	(liability model)	0.08	[0.041-0.119] unit increase	NR [19725427] (imputed)	N
929	chr19	45131983	45131984	rs11670070	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs11670070-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45134681	45134682	rs62119267	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.31	IGSF23	rs62119267-A	0.977685	2E-486		0.334491	[0.32-0.35] unit increase	Affymetrix [NR] (imputed)	N
929	chr19	45134681	45134682	rs62119267	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.31	IGSF23	rs62119267-?	NR	9E-295		0.3103	[0.3-0.33] unit decrease	Affymetrix [5701386] (imputed)	N
929	chr19	45137321	45137322	rs539159088	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	IGSF23, CTB-171A8.1	rs539159088-C	0.01086	2E-11		6.705168	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
929	chr19	45140164	45140165	rs10460181	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs10460181-A	NR	2E-7		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
929	chr19	45140164	45140165	rs10460181	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs10460181-A	0.797	2E-8	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
929	chr19	45140164	45140165	rs10460181	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs10460181-A	NR	2E-13		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
929	chr19	45140164	45140165	rs10460181	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.31	NR	rs10460181-A	0.797	1E-15	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
929	chr19	45143941	45143942	rs7260482	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19q13.31	IGSF23	rs7260482-C	NR	1E-9		1.0778185	NR	Affymetrix, Illumina [8278136] (imputed)	N
929	chr19	45145611	45145612	rs7250339	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.31		rs7250339-A	0.756	2E-10				Affymetrix [10369434] (imputed)	N
929	chr19	45145862	45145863	rs73048339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19q13.31	CTB-171A8.1	rs73048339-C	0.251	1E-10		0.02736931	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
929	chr19	45146102	45146103	rs7255066	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.31	CTB-171A8.1	rs7255066-C	0.2657	2E-29	(PVR)	0.65687	[0.54-0.77] unit decrease	Illumina [8683751] (imputed)	N
929	chr19	45146102	45146103	rs7255066	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	19q13.31	PVR	rs7255066-?	NR	4E-6			[0.8566-0.9447]	NR [2492237]	N
929	chr19	45146102	45146103	rs7255066	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.31	PVR	rs7255066-G	NR	1E-6		1.09	[1.07-1.11]	Illumina [465434]	N
929	chr19	45146401	45146402	rs2301274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.31	CTB-171A8.1	rs2301274-C	0.244425	3E-14		0.019979507	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
929	chr19	45146401	45146402	rs2301274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.31	CTB-171A8.1	rs2301274-C	0.244104	5E-13		0.01858164	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
929	chr19	45146628	45146629	rs2301275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.31	CTB-171A8.1	rs2301275-G	0.198145	3E-35		0.03509732	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr19	45146628	45146629	rs2301275	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.31	NR	rs2301275-A	0.802859	6E-13		0.0177551	[0.013-0.023] unit decrease	NR [NR]	N
929	chr19	45147339	45147340	rs11540084	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.31	PVR	rs11540084-T	0.1974	1E-17		0.03882636	[0.03-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
929	chr19	45147718	45147719	rs10426401	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.31	NR	rs10426401-G	0.285234	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
929	chr19	45147718	45147719	rs10426401	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.31	CEACAM22P, IGSF23, MIR4531, PVR	rs10426401-?		3E-11				NR [NR]	N
929	chr19	45148748	45148748	rs113884102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.31	PVR, CTB-171A8.1	rs113884102-TGAGA	0.245079	6E-15		0.020443948	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr19	45149234	45149235	rs28483039	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.31		rs28483039-?	NR	4E-8				NR [~ 8900000] (imputed)	N
929	chr19	45149612	45149613	rs56261258	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.31	NR	rs56261258-?	NR	7E-14				Affymetrix [7795605] (imputed)	N
929	chr19	45149612	45149613	rs56261258	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs56261258-?	NR	1E-21				Affymetrix [7795605] (imputed)	N
929	chr19	45153112	45153113	rs35959395	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs35959395-C	NR	5E-12		0.179	[0.13-0.23] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45153112	45153113	rs35959395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.31	PVR	rs35959395-C	0.00216700000000003	9E-15		0.18761154	[0.14-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr19	45161565	45161566	rs203709	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	CTB-171A8.1, PVR	rs203709-A	0.2645	4E-17		8.408471	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
929	chr19	45161565	45161566	rs203709	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.31	NR	rs203709-?	NR	1E-9				Affymetrix [7795605] (imputed)	N
929	chr19	45161565	45161566	rs203709	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs203709-?	NR	7E-17				Affymetrix [7795605] (imputed)	N
929	chr19	45162037	45162038	rs203710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.31	PVR	rs203710-G	0.9721764	5E-18		0.05951172	[0.046-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
929	chr19	45162037	45162038	rs203710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.31	PVR	rs203710-G	0.972	1E-9		0.06694429	[0.045-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
929	chr19	45162058	45162059	rs139267469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs139267469-A	NR	2E-10		0.1564	[0.11-0.2] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45162058	45162059	rs139267469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs139267469-A	NR	3E-10		0.1551	[0.11-0.2] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45162058	45162059	rs139267469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs139267469-A	NR	2E-12		0.1734	[0.13-0.22] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45163670	45163671	rs754340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs754340-C	NR	1E-85		0.087	[0.078-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45163670	45163671	rs754340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs754340-C	NR	2E-131		0.1083	[0.1-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45163670	45163671	rs754340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs754340-C	NR	2E-187		0.1299	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45165911	45165912	rs714948	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs714948-A	NR	6E-31		0.0435	[0.036-0.051] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45165911	45165912	rs714948	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs714948-A	NR	4E-45		0.053	[0.046-0.06] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45165911	45165912	rs714948	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.31	NR	rs714948-A	NR	5E-27		0.0405	[0.033-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45165911	45165912	rs714948	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs714948-A	NR	2E-64		0.0638	[0.056-0.071] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45176556	45176557	rs142034848	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs142034848-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45181227	45181228	rs2919845	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs2919845-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45188428	45188429	rs2965156	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs2965156-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45193533	45193534	rs12984266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs12984266-A	NR	7E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45193533	45193534	rs12984266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs12984266-A	NR	9E-21		0.0248	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45193533	45193534	rs12984266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs12984266-A	NR	2E-32		0.0316	[0.026-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45196580	45196581	rs76670936	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs76670936-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45196957	45196958	rs111358663	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.31	APOE	rs111358663-?	NR	3E-16		0.353882	unit decrease	NR [10687077] (imputed)	N
929	chr19	45198059	45198060	rs112952132	33760818	Francis M	2021-03-24	PLoS Genet	Genome-wide association study of fish oil supplementation on lipid traits in 81,246 individuals reveals new gene-diet interaction loci.	LDL levels x fish oil supplementation interaction (2df)	73,832 European ancestry individuals	7,180 European ancestry individuals	19q13.31	LOC107985305	rs112952132-T	0.01	8E-34				Affymetrix [7953137] (imputed)	N
929	chr19	45198935	45198936	rs2965162	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs2965162-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45199523	45199524	rs73035597	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs73035597-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45200525	45200526	rs2965163	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs2965163-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45200633	45200634	rs80000866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs80000866-T	NR	3E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45200633	45200634	rs80000866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs80000866-T	NR	6E-11		0.0343	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45201623	45201624	rs72626214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.31		rs72626214-C	0.89196	3E-8		0.0369226	[0.024-0.05] unit increase	NR [11722792] (imputed)	N
929	chr19	45201623	45201624	rs72626214	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.31		rs72626214-C	0.89196	1E-8		0.0379223	[0.025-0.051] unit increase	NR [11722792] (imputed)	N
929	chr19	45201623	45201624	rs72626214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs72626214-T	NR	5E-10		0.0236	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45201623	45201624	rs72626214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs72626214-T	NR	2E-10		0.0242	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45201623	45201624	rs72626214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs72626214-T	NR	2E-12		0.0268	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45202026	45202027	rs12150984	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs12150984-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
929	chr19	45202051	45202052	rs2965164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.31	NR	rs2965164-T	NR	3E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45202051	45202052	rs2965164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.31	NR	rs2965164-T	NR	1E-13		0.0186	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45202051	45202052	rs2965164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.31	NR	rs2965164-T	NR	2E-22		0.0245	[0.02-0.029] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45202051	45202052	rs2965164	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.31	NR	rs2965164-T	NR	1E-20		0.0234	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45202051	45202052	rs2965164	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.31	NR	rs2965164-C	0.654669	9E-36		0.0264121	[0.022-0.031] unit decrease	NR [NR]	N
929	chr19	45202051	45202052	rs2965164	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.31	CTB-171A8.1	rs2965164-T	0.3456	1E-13		7.438834	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
929	chr19	45202051	45202052	rs2965164	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.31	NR	rs2965164-?	NR	5E-7				Affymetrix [7795605] (imputed)	N
929	chr19	45202051	45202052	rs2965164	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.31	NR	rs2965164-?	NR	1E-11				Affymetrix [7795605] (imputed)	N
929	chr19	45205173	45205174	rs62120568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs62120568-G	0.953985	8E-9		0.0570112	[0.038-0.076] unit decrease	NR [11722792] (imputed)	N
929	chr19	45205173	45205174	rs62120568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs62120568-G	0.953985	4E-9		0.058043	[0.039-0.077] unit decrease	NR [11722792] (imputed)	N
929	chr19	45214555	45214556	rs62120573	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	CEACAM16	rs62120573-T	0.930407	2E-15		0.0321084	[0.024-0.04] unit decrease	Affymetrix [NR] (imputed)	N
929	chr19	45217858	45217859	rs76419583	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs76419583-C	NR	1E-11		0.0223	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
929	chr19	45217858	45217859	rs76419583	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs76419583-C	NR	5E-12		0.0229	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
929	chr19	45217858	45217859	rs76419583	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs76419583-C	NR	6E-17		0.0277	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45220895	45220896	rs11881756	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs11881756-?	NR	3E-24		3.439	[2.76-4.12] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45220895	45220896	rs11881756	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs11881756-?	NR	5E-22		3.043	[2.37-3.72] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45220895	45220896	rs11881756	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CTB-171A8.1	rs11881756-C	0.1138	5E-17		8.381871	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45220895	45220896	rs11881756	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs11881756-?	NR	3E-9				Affymetrix [7795605] (imputed)	N
930	chr19	45220895	45220896	rs11881756	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11881756-?	NR	1E-14				Affymetrix [7795605] (imputed)	N
930	chr19	45221766	45221767	rs79638902	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.32		rs79638902-T	0.1511	4E-16		78.11085	z score increase	NR [6814003]	N
930	chr19	45221766	45221767	rs79638902	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	CEACAM16, BCL3	rs79638902-T	0.127	1E-10		1.33	[1.22-1.45]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45221766	45221767	rs79638902	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs79638902-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45222788	45222789	rs73037426	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs73037426-?	NR	1E-11				Affymetrix [7795605] (imputed)	N
930	chr19	45222788	45222789	rs73037426	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs73037426-?	NR	4E-22				Affymetrix [7795605] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	3E-9		0.105811	[0.071-0.141] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	3E-8		0.0987996	[0.064-0.134] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.0988817	[0.064-0.134] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	1E-8		0.101053	[0.066-0.136] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	4E-9		0.101289	[0.067-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.100288	[0.065-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	3E-8		0.0980774	[0.063-0.133] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-10		0.113231	[0.078-0.148] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	1E-8		0.102272	[0.067-0.137] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	8E-9		0.102342	[0.068-0.137] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	3E-9		0.105653	[0.071-0.141] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.0969165	[0.063-0.131] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.0992985	[0.064-0.134] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-9		0.107209	[0.072-0.142] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.100042	[0.065-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	3E-8		0.0967148	[0.062-0.131] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.0996599	[0.065-0.134] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.097769	[0.064-0.132] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	5E-8		0.0971135	[0.062-0.132] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	7E-10		0.109029	[0.074-0.144] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	9E-9		0.102117	[0.067-0.137] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	4E-8		0.0980652	[0.063-0.133] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	4E-8		0.0979535	[0.063-0.133] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	4E-9		0.101376	[0.068-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	8E-9		0.103046	[0.068-0.138] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	5E-8		0.097767	[0.063-0.133] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	4E-8		0.0971213	[0.063-0.132] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	5E-9		0.101018	[0.067-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs111740474-G	0.985295	2E-8		0.0996341	[0.065-0.135] unit decrease	NR [11722792] (imputed)	N
930	chr19	45223489	45223490	rs111740474	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CTB-171A8.1	rs111740474-A	0.01165	5E-21		9.402366	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45227154	45227155	rs150820726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150820726-A	0.989116	5E-10		0.124694	[0.085-0.164] unit increase	NR [11722792] (imputed)	N
930	chr19	45227154	45227155	rs150820726	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs150820726-A	0.989116	3E-9		0.117123	[0.078-0.156] unit increase	NR [11722792] (imputed)	N
930	chr19	45227154	45227155	rs150820726	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	CEACAM16	rs150820726-A	0.989625	1E-11		0.0714924	[0.051-0.092] unit decrease	Affymetrix [NR] (imputed)	N
930	chr19	45227154	45227155	rs150820726	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	snoZ6	rs150820726-T	0.008836	1E-11		6.80423	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45227154	45227155	rs150820726	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs150820726-?	NR	3E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45227154	45227155	rs150820726	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs150820726-?	NR	3E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45227741	45227742	rs7254776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.32	NR	rs7254776-C	0.353189	6E-11		0.00526095	[0.0035-0.007] unit increase	Affymetrix [16582909] (imputed)	N
930	chr19	45227741	45227742	rs7254776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.32	NR	rs7254776-C	0.35223800000000005	4E-8		0.00580494	[0.0034-0.0082] unit increase	Affymetrix [16582621] (imputed)	N
930	chr19	45227741	45227742	rs7254776	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs7254776-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45231820	45231821	rs1551891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	CEACAM16	rs1551891-G	0.911894	4E-490		0.173541	[0.17-0.18] unit increase	Affymetrix [NR] (imputed)	N
930	chr19	45232160	45232161	rs62117160	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs62117160-G	0.954572	2E-414		0.428614	[0.41-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45232160	45232161	rs62117160	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs62117160-G	0.954572	6E-423		0.433462	[0.41-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45232160	45232161	rs62117160	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs62117160-A	NR	9E-11		0.16441	[0.11-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	9E-30		0.0655	[0.054-0.077] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	3E-686		0.3229	[0.31-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	5E-1094		0.4072	[0.4-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	7E-24		0.0657	[0.053-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	4E-18		0.0525	[0.041-0.064] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	4E-15		0.0491	[0.037-0.061] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	3E-24		0.0587	[0.047-0.07] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	6E-1658		0.5027	[0.49-0.51] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs62117160-A	NR	5E-49		0.0892	[0.077-0.101] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	19q13.32		rs62117160-?	NR	4E-9				NR [~ 8900000] (imputed)	N
930	chr19	45232160	45232161	rs62117160	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs62117160-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45233502	45233503	rs186110295	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	snoZ6	rs186110295-T	0.01273	4E-11		6.5884266	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45233502	45233503	rs186110295	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs186110295-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45233896	45233897	rs138769755	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	19q13.32	RF00285	rs138769755-T	0.0222	8E-7		1.76	[1.45-2.1]	Illumina [64973696] (imputed)	N
930	chr19	45235699	45235700	rs74607435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs74607435-C	NR	4E-36		0.0687	[0.058-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45235699	45235700	rs74607435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs74607435-C	NR	1E-50		0.0821	[0.071-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45235699	45235700	rs74607435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs74607435-C	NR	3E-16		0.0447	[0.034-0.055] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45235699	45235700	rs74607435	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs74607435-C	NR	3E-74		0.1001	[0.089-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45236728	45236729	rs2927434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs2927434-T	0.196375	1E-10		0.0323545	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
930	chr19	45236728	45236729	rs2927434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2927434-T	0.196375	5E-9		0.0303248	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
930	chr19	45236728	45236729	rs2927434	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs2927434-T	0.196375	2E-8		0.0273165	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
930	chr19	45240583	45240584	rs55923289	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCL3	rs55923289-C	0.13	3E-44		13.958599	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	4E-66		0.260154	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	2E-76		0.276604	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	4E-74		0.273358	[0.24-0.3] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	5E-64		0.260204	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	2E-84		0.291181	[0.26-0.32] unit decrease	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	3E-61		0.245785	[0.22-0.27] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	4E-78		0.274711	[0.25-0.3] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	2E-72		0.279301	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	7E-74		0.281981	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	5E-79		0.282862	[0.25-0.31] unit increase	NR [11722792] (imputed)	N
930	chr19	45241248	45241248	rs200046586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs200046586-C	0.980945	1E-64		0.262417	[0.23-0.29] unit increase	NR [11722792] (imputed)	N
930	chr19	45241637	45241638	rs2927437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs2927437-G	NR	1E-59		0.0494	[0.044-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45241637	45241638	rs2927437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs2927437-G	NR	2E-85		0.0594	[0.054-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45241637	45241638	rs2927437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs2927437-G	NR	5E-30		0.0345	[0.029-0.04] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45241637	45241638	rs2927437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs2927437-G	NR	3E-133		0.0746	[0.069-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45241637	45241638	rs2927437	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2927437-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45242106	45242107	rs2927438	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	19q13.32	NR	rs2927438-C	0.778	2E-6		1.1628	[1.1-1.25]	Illumina [922031]	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	2E-177	(EA)			Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	1E-83				Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	5E-213	(EA)			Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	2E-273				Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	8E-89	(EA)	7.511	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	8E-35		3.046	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	3E-14		2.618	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	2E-49	(EA)	8.125	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	5E-9				Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	4E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	6E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	2E-10				Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.32	CEACAM16, BCL3	rs1531517-A	NR	1E-7	(EA)	0.013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
930	chr19	45242172	45242173	rs1531517	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1531517-G	NR	2E-49		0.118	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242172	45242173	rs1531517	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1531517-G	0.92	1E-68	(EA)	0.162	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242172	45242173	rs1531517	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1531517-G	NR	5E-94		0.167	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242172	45242173	rs1531517	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1531517-G	0.92	2E-122	(EA)	0.223	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242172	45242173	rs1531517	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1531517-G	NR	3E-7		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242739	45242740	rs2927439	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs2927439-G	0.327	1E-8		0.84	[0.79-0.892]	NR [38043082] (imputed)	N
930	chr19	45242739	45242740	rs2927439	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs2927439-A	NR	2E-25		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242739	45242740	rs2927439	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs2927439-A	0.638	1E-33	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242739	45242740	rs2927439	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs2927439-A	NR	1E-43		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242739	45242740	rs2927439	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs2927439-A	0.638	3E-52	(EA)	0.078	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45242739	45242740	rs2927439	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs2927439-A	NR	1E-6		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247047	45247048	rs4803748	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs4803748-?	NR	2E-31		2.101	[1.72-2.49] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45247047	45247048	rs4803748	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	BCL3	rs4803748-C	0.617	3E-16		1.2820514	[1.22-1.37]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45247626	45247627	rs4803750	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or fasting insulin levels (pleiotropy)	54,162 European ancestry cases, 51,750 European ancestry individuals	NA	19q13.32	BCL3	rs4803750-?		7E-13				NR [NR]	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	NR	3E-68		0.153	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	0.923	1E-73	(EA)	0.175	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	NR	1E-119		0.208	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	0.923	3E-131	(EA)	0.24	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	NR	3E-6		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4803750-A	0.923	5E-6	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45247626	45247627	rs4803750	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19q13.32	NR	rs4803750-?	NR	1E-13				Affymetrix [NR]	N
930	chr19	45247626	45247627	rs4803750	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19q13.32	NR	rs4803750-?	NR	4E-16				Affymetrix [NR]	N
930	chr19	45247626	45247627	rs4803750	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	2-APOE, APOC1	rs4803750-?	NR	3E-51	(APOB.assay, whole)	8.495	[NR] unit decrease	Illumina [335603]	N
930	chr19	45247626	45247627	rs4803750	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	2-APOE, APOC1	rs4803750-?	NR	1E-37	(LDL-C.assay, whole)	9.284	[NR] unit decrease	Illumina [335603]	N
930	chr19	45247626	45247627	rs4803750	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	19q13.32	2-APOE, APOC1	rs4803750-?	NR	1E-27	(LDL-C.assay, fasting)	9.276	[NR] unit decrease	Illumina [335603]	N
930	chr19	45249660	45249661	rs12459810	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12459810-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45250330	45250331	rs12460388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12460388-T	NR	1E-9		0.0309	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45251155	45251156	rs2965169	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	BCL3	rs2965169-A	0.611261	6E-10		0.0121294	[0.0083-0.016] unit decrease	Affymetrix [NR] (imputed)	N
930	chr19	45251155	45251156	rs2965169	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	BCL3	rs2965169-A	0.611283	6E-21		0.0188854	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
930	chr19	45251155	45251156	rs2965169	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs2965169-?	NR	1E-19		1.737	[1.35-2.12] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45251155	45251156	rs2965169	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCL3	rs2965169-C	0.3883	3E-57		15.944032	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45251155	45251156	rs2965169	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs2965169-?	NR	6E-24				Affymetrix [7795605] (imputed)	N
930	chr19	45251155	45251156	rs2965169	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2965169-?	NR	1E-49				Affymetrix [7795605] (imputed)	N
930	chr19	45251805	45251806	rs531660643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.32	NR	rs531660643-T	NR	3E-11		0.0573	[0.04-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45251805	45251806	rs531660643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.32	BCL3	rs531660643-T	0.023064	5E-20		0.06944797	[0.055-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
930	chr19	45251805	45251806	rs531660643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	BCL3	rs531660643-T	0.02306	9E-21		0.070911735	[0.056-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
930	chr19	45251805	45251806	rs531660643	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	BCL3	rs531660643-G	0.977165	2E-905		0.457107	[0.44-0.47] unit increase	Affymetrix [NR] (imputed)	N
930	chr19	45251805	45251806	rs531660643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19q13.32	BCL3	rs531660643-T	0.0237	8E-9		0.06997331	[0.046-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
930	chr19	45252714	45252717	rs143432496	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19q13.32	BCL3	rs143432496-A	0.27	5E-11				NR [> 9500000] (imputed)	N
930	chr19	45252714	45252717	rs143432496	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19q13.32	BCL3	rs143432496-A	0.272786	2E-11		1.0466348	1.03274562180494-1.06071075974291]	NR [9572556] (imputed)	N
930	chr19	45253490	45253491	rs10401176	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	BCL3, CEACAM16, CEACAM19, IGSF23, MIR4531, PVR	rs10401176-?		3E-12				NR [NR]	N
930	chr19	45253490	45253491	rs10401176	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs10401176-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45253581	45253582	rs8100197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	19q13.32		rs8100197-?	NR	3E-11				NR [~ 8900000] (imputed)	N
930	chr19	45253581	45253582	rs8100197	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs8100197-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45254167	45254168	rs8103315	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs8103315-A	0.119	8E-11		1.35	[1.233-1.478]	NR [38043082] (imputed)	N
930	chr19	45254167	45254168	rs8103315	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCL3	rs8103315-?	NR	4E-6		1.3527919		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45254167	45254168	rs8103315	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCL3	rs8103315-?	NR	2E-6	(males)	1.6666555		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45254167	45254168	rs8103315	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs8103315-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45255265	45255266	rs62117205	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs62117205-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45262695	45262696	rs114036675	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of mother: Alzheimer's disease/dementia (UKB data field 20110_10)	36,155 European ancestry cases, 381,650 European ancestry controls	NA	19q13.32		rs114036675-A	0.002683	9E-12		0.54	[0.38-0.7] unit increase	NR [11842647] (imputed)	N
930	chr19	45262695	45262696	rs114036675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs114036675-A	NR	5E-9		0.1293	[0.086-0.173] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45262695	45262696	rs114036675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs114036675-A	NR	3E-10		0.1388	[0.095-0.182] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45262695	45262696	rs114036675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs114036675-A	NR	5E-13		0.16	[0.12-0.2] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45262695	45262696	rs114036675	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCL3	rs114036675-A	0.002756	3E-10		6.2855	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	4E-14		0.149928	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-8		0.10938	[0.071-0.148] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-8		0.109228	[0.071-0.147] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	7E-12		0.136594	[0.098-0.176] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-8		0.109724	[0.072-0.148] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	9E-9		0.114591	[0.076-0.154] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	9E-14		0.148138	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-14		0.153001	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	5E-17		0.167781	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	9E-15		0.152564	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	4E-16		0.161147	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	1E-10		0.124365	[0.086-0.162] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	1E-11		0.134756	[0.096-0.174] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-14		0.152481	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	5E-9		0.116265	[0.077-0.155] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	6E-14		0.149346	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-13		0.147667	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	3E-11		0.128499	[0.091-0.166] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	4E-9		0.114805	[0.077-0.153] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-8		0.113079	[0.074-0.152] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	3E-13		0.146325	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	2E-14		0.151286	[0.11-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45284626	45284627	rs80168591	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs80168591-G	0.986841	4E-11		0.128069	[0.09-0.166] unit decrease	NR [11722792] (imputed)	N
930	chr19	45287102	45287103	rs117326714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs117326714-G	NR	6E-11		0.0494	[0.035-0.064] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45290476	45290477	rs2927447	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs2927447-T	0.910796	9E-19		0.0309987	[0.024-0.038] unit decrease	NR [NR]	N
930	chr19	45292288	45292289	rs2965118	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	19q13.32	NR	rs2965118-G	0.109351	9E-6				Illumina [5378266] (imputed)	N
930	chr19	45295885	45295886	rs113330691	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	CBLC	rs113330691-G	0.965108	2E-553		0.282453	[0.27-0.29] unit increase	Affymetrix [NR] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-147		0.366905	[0.34-0.39] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	9E-152		0.379387	[0.35-0.41] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-183		0.416827	[0.39-0.45] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	7E-182		0.42224	[0.39-0.45] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	3E-169		0.403908	[0.38-0.43] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-187		0.419878	[0.39-0.45] unit decrease	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-171		0.418441	[0.39-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-130		0.365371	[0.34-0.39] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-168		0.410542	[0.38-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-161		0.404752	[0.38-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	6E-169		0.401679	[0.37-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-134		0.367706	[0.34-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-115		0.337374	[0.31-0.37] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-188		0.417729	[0.39-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-264		0.518486	[0.49-0.55] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	3E-162		0.407739	[0.38-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-177		0.422885	[0.39-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-189		0.439371	[0.41-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-138		0.362667	[0.33-0.39] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-166		0.411007	[0.38-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-175		0.402248	[0.37-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-192		0.427249	[0.4-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-144		0.35652	[0.33-0.38] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	3E-288		0.54203	[0.51-0.57] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	9E-213		0.46614	[0.44-0.5] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	8E-204		0.448514	[0.42-0.48] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-219		0.468485	[0.44-0.5] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	1E-165		0.398187	[0.37-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-134		0.368707	[0.34-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	3E-125		0.35694	[0.33-0.39] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	3E-168		0.410256	[0.38-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-188		0.436664	[0.41-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-154		0.371637	[0.34-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-218		0.459754	[0.43-0.49] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-120		0.346431	[0.32-0.38] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-164		0.406222	[0.38-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-144		0.383024	[0.35-0.41] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-206		0.443522	[0.42-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-153		0.372875	[0.35-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	5E-155		0.386067	[0.36-0.41] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-200		0.439622	[0.41-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-159		0.40347	[0.37-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	6E-132		0.367527	[0.34-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	4E-177		0.420856	[0.39-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	2E-197		0.434049	[0.41-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs112450640-G	0.980495	9E-122		0.351532	[0.32-0.38] unit increase	NR [11722792] (imputed)	N
930	chr19	45296363	45296364	rs112450640	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs112450640-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45296363	45296364	rs112450640	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	19q13.32	CBLC	rs112450640-A	0.0204	9E-6		0.1085	[0.06-0.157] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
930	chr19	45296805	45296806	rs3208856	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	19q13.32		rs3208856-T	0.03	3E-7		4.71	[2.91-6.51] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
930	chr19	45296805	45296806	rs3208856	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19q13.32		rs3208856-T	0.032	2E-31	(EA)	7.4569	[6.21-8.71] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	NR	5E-45		0.166	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	0.964	1E-41	(EA)	0.167	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	NR	6E-83		0.232	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	0.978	4E-7	(Hispanic)	0.258	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	0.964	2E-78	(EA)	0.237	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	NR	4E-7		0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs3208856-C	0.964	9E-6	(EA)	0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45296805	45296806	rs3208856	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	LDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19q13.32	CBLC	rs3208856-?	0.0343	6E-30	(EA)	8.0	mg/dl decrease	Illumina [247644]	N
930	chr19	45297927	45297928	rs2889414	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2889414-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45300938	45300939	rs186872766	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	BCAM	rs186872766-G	0.9928125	1E-12	(BCAM, 2816_50_2)	1.0213197	[0.74-1.3] unit decrease	Illumina [> 1000000] (imputed)	N
930	chr19	45302503	45302504	rs148933445	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs148933445-G	0.978011	2E-33		0.089174	[0.075-0.104] unit decrease	NR [NR]	N
930	chr19	45302503	45302504	rs148933445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs148933445-?	NR	4E-23				NR [~ 8900000] (imputed)	N
930	chr19	45302503	45302504	rs148933445	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs148933445-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45302950	45302951	rs2967668	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs2967668-G	0.094	2E-9		0.725	[0.653-0.805]	NR [38043082] (imputed)	N
930	chr19	45302950	45302951	rs2967668	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs2967668-?	NR	1E-35		4.1	[3.37-4.83] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45302950	45302951	rs2967668	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs2967668-?	NR	1E-27		3.727	[3.01-4.45] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45302950	45302951	rs2967668	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	CBLC	rs2967668-A	0.913	3E-11		1.4084507	[1.28-1.56]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45302950	45302951	rs2967668	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CBLC	rs2967668-G	0.1098	7E-25		10.3022	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45302950	45302951	rs2967668	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs2967668-?	NR	6E-13				Affymetrix [7795605] (imputed)	N
930	chr19	45302950	45302951	rs2967668	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2967668-?	NR	4E-18				Affymetrix [7795605] (imputed)	N
930	chr19	45305583	45305584	rs117142879	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs117142879-T	NR	1E-9		0.0527	[0.036-0.07] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45305752	45305753	rs10408993	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs10408993-C	NR	5E-11		0.0332	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45308207	45308208	rs144579705	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	BCAM	rs144579705-A	0.01	4E-14	(Basal Cell Adhesion Molecule, BCAM.2816.50.2)	1.0	[0.75-1.25] unit increase	Affymetrix [10572788] (imputed)	N
930	chr19	45311083	45311084	rs140824606	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs140824606-?	NR	4E-26				Affymetrix [7795605] (imputed)	N
930	chr19	45311083	45311084	rs140824606	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs140824606-?	NR	4E-26				Affymetrix [7795605] (imputed)	N
930	chr19	45314323	45314324	rs28399607	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.32	BCAM	rs28399607-T	0.941342	1E-20		0.00504282	[0.004-0.0061] unit increase	Affymetrix [13995440] (imputed)	N
930	chr19	45314323	45314324	rs28399607	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs28399607-T	0.941019	2E-25		0.0488741	[0.04-0.058] unit increase	NR [NR]	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	4E-16		0.055	[0.042-0.068] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	8E-281		0.2419	[0.23-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	1E-436		0.302	[0.29-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	1E-13		0.0566	[0.042-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	5E-18		0.0586	[0.045-0.072] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	2E-674		0.3767	[0.36-0.39] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45316587	45316588	rs28399654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs28399654-A	NR	6E-21		0.0665	[0.053-0.08] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45317137	45317138	rs28399613	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs28399613-T	NR	1E-9		0.047	[0.032-0.062] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45317137	45317138	rs28399613	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs28399613-T	NR	9E-12		0.053	[0.038-0.068] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45318350	45318351	rs28399657	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs28399657-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-340		0.379049	[0.36-0.4] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-368		0.402328	[0.38-0.42] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-374		0.404715	[0.39-0.42] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-384		0.417558	[0.4-0.44] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	3E-358		0.399781	[0.38-0.42] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-397		0.415723	[0.4-0.43] unit decrease	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	9E-453		0.46276	[0.44-0.48] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-334		0.398564	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-420		0.441878	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	7E-409		0.438557	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-428		0.435428	[0.42-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-354		0.407564	[0.39-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	3E-335		0.391862	[0.37-0.41] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-442		0.435169	[0.42-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-411		0.442175	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-438		0.452191	[0.43-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-474		0.473027	[0.45-0.49] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-368		0.402622	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-417		0.442866	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-404		0.415596	[0.4-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-361		0.398228	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-357		0.382271	[0.36-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-510		0.491055	[0.47-0.51] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-492		0.474072	[0.45-0.49] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-527		0.494435	[0.47-0.51] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-406		0.424446	[0.41-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-381		0.42323	[0.4-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-348		0.405483	[0.39-0.43] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	5E-446		0.454866	[0.44-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-468		0.468389	[0.45-0.49] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	4E-337		0.374238	[0.36-0.39] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-456		0.45231	[0.43-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-324		0.388546	[0.37-0.41] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-411		0.437594	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-368		0.416757	[0.4-0.44] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-506		0.47268	[0.45-0.49] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-337		0.376971	[0.36-0.4] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-343		0.390812	[0.37-0.41] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	1E-411		0.428399	[0.41-0.45] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	6E-416		0.444224	[0.42-0.46] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-334		0.398603	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	7E-439		0.450854	[0.43-0.47] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	2E-484		0.46257	[0.44-0.48] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs118147862-G	0.954236	5E-341		0.401161	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
930	chr19	45319630	45319631	rs118147862	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	19q13.32		rs118147862-A	0.038	2E-52		0.58		Affymetrix [15679186] (imputed)	N
930	chr19	45319630	45319631	rs118147862	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.32	BCAM	rs118147862-A	0.0369	1E-300		0.3977	[0.38-0.41] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs1135062-G	NR	3E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs1135062-G	NR	3E-14		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs1135062-G	NR	2E-25		0.0273	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs1135062-G	NR	1E-10		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs1135062-G	NR	2E-38		0.034	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45322743	45322744	rs1135062	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs1135062-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45323343	45323344	rs142092405	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCAM	rs142092405-G	0.00433	6E-12		6.8754373	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45324137	45324138	rs28399637	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.32		rs28399637-A	0.3284	1E-67		318.37918	z score increase	NR [6814003]	N
930	chr19	45324137	45324138	rs28399637	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs28399637-A	0.281	4E-25		1.535	[1.416-1.665]	NR [38043082] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	4E-215		0.0804	[0.075-0.085] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	1E-314		0.0975	[0.092-0.103] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	1E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	4E-116		0.059	[0.054-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	3E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	1E-477		0.1203	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs28399637-A	NR	8E-25		0.0278	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
930	chr19	45324137	45324138	rs28399637	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCAM	rs28399637-A	0.3156	2E-143		25.508192	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45324137	45324138	rs28399637	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs28399637-?	NR	8E-72				Affymetrix [7795605] (imputed)	N
930	chr19	45324137	45324138	rs28399637	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs28399637-?	NR	7E-120				Affymetrix [7795605] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981221	5E-15		0.124889	[0.094-0.156] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	1E-14		0.124738	[0.093-0.156] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	2E-13		0.112729	[0.083-0.143] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	8E-10		0.101237	[0.069-0.134] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	5E-23		0.162265	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	1E-11		0.111395	[0.079-0.143] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	3E-17		0.130258	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	2E-10		0.0943356	[0.065-0.124] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981221	6E-10		0.0988623	[0.068-0.13] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	1E-21		0.151377	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	4E-15		0.123229	[0.093-0.154] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	3E-9		0.0911451	[0.061-0.121] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	6E-11		0.0995762	[0.07-0.129] unit increase	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981221	1E-12		0.111837	[0.081-0.143] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	9E-10		0.100416	[0.068-0.133] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	4E-18		0.140948	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	6E-17		0.129061	[0.099-0.159] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981221	1E-12		0.111883	[0.081-0.143] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981218	2E-29		0.182584	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs28399664-C	0.981217	4E-10		0.100745	[0.069-0.132] unit decrease	NR [11722792] (imputed)	N
930	chr19	45324755	45324756	rs28399664	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs28399664-G	0.016	1E-13		2.512	[1.969-3.204]	NR [38043082] (imputed)	N
930	chr19	45324755	45324756	rs28399664	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs28399664-G	0.016	3E-9		2.568	[1.882-3.503]	NR [38043082] (imputed)	N
930	chr19	45324755	45324756	rs28399664	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	BCAM	rs28399664-G	0.017	6E-16		2.59	[2.06-3.26]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45324755	45324756	rs28399664	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs28399664-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45326663	45326664	rs10405693	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCAM	rs10405693-?	NR	3E-14		1.3981868		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45326663	45326664	rs10405693	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCAM	rs10405693-?	NR	1E-9	(females)	1.4069744		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45326767	45326768	rs1871045	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	19q13.32	BCAM, PVRL2	rs1871045-T	0.39	4E-6	(Hispanic)	0.52	[0.30-0.74] unit increase	Affymetrix [706791]	N
930	chr19	45327308	45327309	rs10412413	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs10412413-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45328378	45328379	rs58826447	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOC1P1, APOC2, APOC4, APOC4-APOC2, APOE, BCAM, BCL3, CBLC, CEACAM16, CEACAM19, CLPTM1, IGSF23, MIR4531, MIR8085, PVR, PVRL2, RELB, TOMM40	rs58826447-?		7E-54				NR [NR]	N
930	chr19	45329213	45329214	rs10402271	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCAM	rs10402271-?	NR	7E-14		1.3904976		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45329213	45329214	rs10402271	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	BCAM	rs10402271-?	NR	2E-9	(females)	1.4007349		Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	NR	2E-36		0.057	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	0.674	3E-36	(EA)	0.062	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	NR	1E-56		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	0.674	2E-58	(EA)	0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	NR	2E-7		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329213	45329214	rs10402271	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10402271-T	0.674	2E-7	(EA)	0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
930	chr19	45329437	45329438	rs78986976	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	BCAM, PVRL2	rs78986976-G	0.968	5E-8		1.5384616	[1.32-1.79]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45329437	45329438	rs78986976	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCAM	rs78986976-A	0.05489	8E-11		6.508301	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45329437	45329438	rs78986976	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs78986976-?	NR	2E-7				Affymetrix [7795605] (imputed)	N
930	chr19	45329437	45329438	rs78986976	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs78986976-?	NR	5E-9				Affymetrix [7795605] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	8E-10		0.0862862	[0.059-0.114] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-8		0.0788253	[0.051-0.106] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-9		0.0820493	[0.055-0.109] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0797685	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0797893	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-8		0.0797355	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0791627	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-9		0.0837114	[0.056-0.111] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-8		0.076728	[0.05-0.103] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	4E-8		0.077114	[0.05-0.105] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0799227	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	2E-8		0.0793899	[0.052-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	3E-10		0.0875837	[0.06-0.115] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0799996	[0.053-0.107] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	4E-10		0.0848743	[0.058-0.111] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-8		0.0804197	[0.053-0.108] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	1E-9		0.0824355	[0.056-0.109] unit decrease	NR [11722792] (imputed)	N
930	chr19	45330335	45330336	rs749132185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs749132185-T	0.967127	7E-9		0.0815517	[0.054-0.109] unit decrease	NR [11722792] (imputed)	N
930	chr19	45331260	45331261	rs547509922	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	BCAM	rs547509922-T	0.003614	3E-13		7.314314	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45331685	45331686	rs112262807	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs112262807-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45333833	45333834	rs4803760	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs4803760-T	0.20346	4E-16		0.0419409	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
930	chr19	45333833	45333834	rs4803760	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs4803760-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45335675	45335676	rs56394238	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs56394238-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45335995	45335996	rs563366239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCAM	5,358 Icelandic ancestry individuals	NA	19q13.32		rs563366239-G	0.0145	2E-36		0.924338	[0.78-1.07] unit increase	Illumina [7506463] (imputed)	N
930	chr19	45337917	45337918	rs147711004	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs147711004-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
930	chr19	45340137	45340138	rs2927482	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs2927482-?	NR	2E-16		1.562	[1.18-1.94] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45341947	45341948	rs10407439	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs10407439-A	0.296	1E-58		16.138115	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45341947	45341948	rs10407439	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs10407439-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45342629	45342630	rs73572039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs73572039-T	NR	1E-24		0.0397	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45342629	45342630	rs73572039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs73572039-T	NR	2E-33		0.0466	[0.039-0.054] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45342629	45342630	rs73572039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73572039-T	NR	1E-41		0.0524	[0.045-0.06] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45342814	45342815	rs1466435	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs1466435-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45343578	45343579	rs55840414	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs55840414-A	0.1183	5E-18		8.655959	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45343578	45343579	rs55840414	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs55840414-?	NR	8E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45343578	45343579	rs55840414	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs55840414-?	NR	2E-15				Affymetrix [7795605] (imputed)	N
930	chr19	45343663	45343664	rs2972562	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2972562-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45345786	45345787	rs111371860	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs111371860-T	0.04	6E-9		0.642	[0.553-0.745]	NR [38043082] (imputed)	N
930	chr19	45345786	45345787	rs111371860	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	BCAM, PVRL2	rs111371860-A	0.961	1E-12		1.6949153	[1.45-1.92]	Affymetrix, Illumina [38043082] (imputed)	N
930	chr19	45345786	45345787	rs111371860	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs111371860-T	0.06009	6E-35		12.327317	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
930	chr19	45345786	45345787	rs111371860	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs111371860-?	NR	2E-18				Affymetrix [7795605] (imputed)	N
930	chr19	45345786	45345787	rs111371860	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs111371860-?	NR	5E-24				Affymetrix [7795605] (imputed)	N
930	chr19	45346665	45346666	rs148601586	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	PVRL2	rs148601586-C	0.986691	6E-89		0.183606	[0.17-0.2] unit decrease	Affymetrix [NR] (imputed)	N
930	chr19	45346665	45346666	rs148601586	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs148601586-?	NR	2E-43				Affymetrix [7795605] (imputed)	N
930	chr19	45346665	45346666	rs148601586	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs148601586-?	NR	2E-43				Affymetrix [7795605] (imputed)	N
930	chr19	45347560	45347561	rs11668738	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11668738-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45347910	45347911	rs4452060	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	PVRL2	rs4452060-C	0.579305	7E-343		0.0833597	[0.079-0.087] unit decrease	Affymetrix [NR] (imputed)	N
930	chr19	45347910	45347911	rs4452060	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19q13.32	PVRL2	rs4452060-A	0.42	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
930	chr19	45348252	45348253	rs10426423	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs10426423-C	0.620314	3E-6		1.265674	[1.15-1.38]	Affymetrix, Illumina [2928658] (imputed)	N
930	chr19	45349176	45349177	rs77241309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs77241309-C	NR	1E-12		0.0277	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45349176	45349177	rs77241309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs77241309-C	NR	1E-25		0.041	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45349176	45349177	rs77241309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs77241309-C	NR	1E-37		0.0501	[0.042-0.058] unit increase	Affymetrix [9000000] (imputed)	N
930	chr19	45349176	45349177	rs77241309	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs77241309-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
930	chr19	45349401	45349402	rs3810143	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs3810143-?	NR	8E-43		2.75	[2.35-3.15] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
930	chr19	45349401	45349402	rs3810143	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs3810143-?	NR	2E-52		2.917	[2.52-3.31] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45351515	45351516	rs41289512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs41289512-C	0.957695	4E-52		0.154057	[0.13-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45351515	45351516	rs41289512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs41289512-C	0.957695	8E-56		0.159837	[0.14-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	8E-122		0.1395	[0.13-0.15] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	2E-188		0.1742	[0.16-0.19] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	2E-29		0.0699	[0.058-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	1E-198		0.1788	[0.17-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	2E-14		0.0457	[0.034-0.057] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	9E-308		0.2231	[0.21-0.23] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs41289512-G	NR	1E-39		0.0821	[0.07-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45351515	45351516	rs41289512	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19q13.32	PVRL2	rs41289512-G	0.0428705	1E-17		0.11788354	[0.091-0.145] unit increase	Affymetrix [7288503] (imputed)	N
931	chr19	45351515	45351516	rs41289512	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	APOE	rs41289512-G	0.039	6E-276		35.5	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45351515	45351516	rs41289512	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	19q13.32	APOE	rs41289512-G	NR	3E-194		29.735075	NR z-score increase	Illumina [up to 9862738] (imputed)	N
931	chr19	45351515	45351516	rs41289512	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs41289512-?	NR	6E-130				Affymetrix [7795605] (imputed)	N
931	chr19	45351515	45351516	rs41289512	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs41289512-?	NR	5E-175				Affymetrix [7795605] (imputed)	N
931	chr19	45351745	45351746	rs1871047	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19q13.32	NR	rs1871047-A	0.6	2E-9		0.0113	[0.0075-0.0151] unit decrease	NR [NR]	N
931	chr19	45351745	45351746	rs1871047	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs1871047-A	0.619781	2E-6		1.270037	[1.15-1.39]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45352486	45352487	rs12974942	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12974942-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45352803	45352804	rs4802240	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs4802240-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45354295	45354296	rs11666329	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11666329-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45356140	45356141	rs2972558	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2972558-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45357002	45357003	rs35396326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19q13.32	NECTIN2	rs35396326-C	0.704	2E-8		0.024742	[0.016-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
931	chr19	45357376	45357377	rs4803764	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs4803764-C	0.279	6E-17		1.466	[1.34-1.603]	NR [38043082] (imputed)	N
931	chr19	45357376	45357377	rs4803764	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	NCTIN2	rs4803764-C	0.282	1E-34		1.52	[1.42-1.63]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45357376	45357377	rs4803764	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs4803764-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45357938	45357939	rs2927468	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs2927468-A	0.448	1E-12		0.785	[0.734-0.839]	NR [38043082] (imputed)	N
931	chr19	45357938	45357939	rs2927468	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs2927468-?	NR	5E-61				Affymetrix [7795605] (imputed)	N
931	chr19	45357938	45357939	rs2927468	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2927468-?	NR	4E-108				Affymetrix [7795605] (imputed)	N
931	chr19	45358025	45358026	rs143459034	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs143459034-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45358374	45358375	rs72320093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.32	PVRL2	rs72320093-C	0.682087	7E-10		0.015293266	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45360487	45360488	rs375972689	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	PVRL2	rs375972689-T	0.989318	5E-95		0.208537	[0.19-0.23] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45360487	45360488	rs375972689	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs375972689-?	NR	1E-32				Affymetrix [7795605] (imputed)	N
931	chr19	45360487	45360488	rs375972689	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs375972689-?	NR	1E-32				Affymetrix [7795605] (imputed)	N
931	chr19	45360572	45360573	rs2972557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs2972557-A	NR	1E-13		0.0273	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45360572	45360573	rs2972557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs2972557-A	NR	5E-17		0.0309	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45360572	45360573	rs2972557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs2972557-A	NR	5E-27		0.0397	[0.032-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45360761	45360762	rs8112526	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs8112526-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45361223	45361224	rs440277	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.32	NECTIN2	rs440277-G	0.688029	6E-10		0.00351092	[0.0024-0.0046] unit decrease	Affymetrix [13995440] (imputed)	N
931	chr19	45361223	45361224	rs440277	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs440277-G	0.691681	2E-7		1.321105	[1.19-1.45]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45361223	45361224	rs440277	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	PVRL2	rs440277-G	0.70046875	4E-6	(PVRL2, 6245_4_3)	0.12346666	[0.071-0.176] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45361223	45361224	rs440277	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs440277-G	0.70046875	3E-14	(TBCA, 12501_10_3)	0.20451695	[0.15-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45361223	45361224	rs440277	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs440277-G	0.70046875	3E-12	(S100A13, 7223_60_3)	0.18907854	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45361223	45361224	rs440277	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs440277-G	0.70046875	1E-8	(ARL2, 12587_65_3)	0.15634902	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45361573	45361574	rs3852856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs3852856-A	NR	6E-71		0.0568	[0.051-0.063] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361573	45361574	rs3852856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs3852856-A	NR	6E-95		0.066	[0.06-0.072] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361573	45361574	rs3852856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs3852856-A	NR	1E-122		0.0752	[0.069-0.081] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	1E-450		0.1753	[0.17-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	2E-695		0.2179	[0.21-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	2E-11		0.0292	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	2E-17		0.0344	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	6E-62		0.0644	[0.057-0.072] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	2E-1047		0.2678	[0.26-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs365653-G	NR	3E-46		0.058	[0.05-0.066] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45361645	45361646	rs365653	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs365653-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45363699	45363700	rs12978931	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12978931-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45363819	45363820	rs138607350	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs138607350-G	0.011	9E-9		2.277	[1.72-3.013]	NR [38043082] (imputed)	N
931	chr19	45363819	45363820	rs138607350	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs138607350-G	0.013	3E-8		2.733	[1.916-3.898]	NR [38043082] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs138607350-?	NR	4E-102		1.03437	unit increase	NR [10687077] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs138607350-G	NR	1E-11		0.0889	[0.063-0.115] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs138607350-G	NR	7E-37		0.1667	[0.14-0.19] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs138607350-G	NR	8E-36		0.1645	[0.14-0.19] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs138607350-G	NR	8E-42		0.1783	[0.15-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45363819	45363820	rs138607350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs138607350-G	NR	9E-47		0.1893	[0.16-0.22] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45363819	45363820	rs138607350	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	NCTIN2	rs138607350-G	0.014	6E-14		2.66	[2.06-3.43]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45363819	45363820	rs138607350	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs138607350-G	0.00629	3E-65		17.060017	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45365446	45365447	rs146275714	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs146275714-G	0.978919	3E-16		0.124089	[0.094-0.154] unit decrease	NR [11722792] (imputed)	N
931	chr19	45365446	45365447	rs146275714	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs146275714-?	NR	1E-300		1.11415	unit increase	NR [10687077] (imputed)	N
931	chr19	45365816	45365817	rs11665829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs11665829-A	NR	1E-27		0.0269	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45365816	45365817	rs11665829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs11665829-A	NR	6E-40		0.0326	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45365816	45365817	rs11665829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs11665829-A	NR	6E-50		0.0366	[0.032-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45365816	45365817	rs11665829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs11665829-A	NR	2E-60		0.0405	[0.036-0.045] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45365816	45365817	rs11665829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs11665829-A	NR	4E-14		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	4E-10		0.176882	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	4E-8		0.156146	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	2E-9		0.168677	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	2E-9		0.168458	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	1E-14		0.210781	[0.16-0.26] unit increase	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	2E-13		0.20696	[0.15-0.26] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	5E-10		0.176697	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	6E-9		0.163508	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	5E-10		0.176062	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	4E-9		0.166645	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	5E-11		0.176768	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	2E-13		0.207188	[0.15-0.26] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	3E-11		0.188449	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	5E-10		0.172773	[0.12-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	8E-11		0.182295	[0.13-0.24] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	3E-8		0.155909	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	4E-9		0.165459	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	3E-9		0.167333	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	2E-8		0.158846	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	3E-9		0.167732	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs183427010-G	0.994199	1E-9		0.16998	[0.12-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45366497	45366498	rs183427010	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs183427010-A	0.004629	3E-21		9.459884	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45367776	45367777	rs8105340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs8105340-T	NR	2E-9		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45367904	45367905	rs112283362	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs112283362-A	0.983205	2E-8		0.0465808	[0.03-0.063] unit decrease	NR [NR]	N
931	chr19	45368009	45368010	rs3112440	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs3112440-?	NR	2E-14		0.102341	unit increase	NR [10687077] (imputed)	N
931	chr19	45368319	45368320	rs419010	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs419010-C	0.4477	8E-9		5.773656	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45370837	45370838	rs12610605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs12610605-A	NR	5E-13		0.0236	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45370837	45370838	rs12610605	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs12610605-A	NR	8E-37		0.0414	[0.035-0.048] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45370853	45370854	rs416041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs416041-A	NR	8E-23		0.0255	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45370853	45370854	rs416041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs416041-A	NR	1E-32		0.0309	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45370853	45370854	rs416041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs416041-A	NR	8E-44		0.0361	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45370853	45370854	rs416041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs416041-A	NR	3E-50		0.0388	[0.034-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45370853	45370854	rs416041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs416041-A	NR	7E-12		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45370940	45370941	rs41290100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs41290100-T	NR	4E-10		0.0466	[0.032-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45370940	45370941	rs41290100	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs41290100-T	NR	2E-21		0.071	[0.056-0.086] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45370940	45370941	rs41290100	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs41290100-T	0.02432	2E-15		7.9216814	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45370940	45370941	rs41290100	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs41290100-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45371092	45371093	rs150358728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs150358728-T	NR	1E-9		0.0654	[0.044-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45371092	45371093	rs150358728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs150358728-T	NR	2E-9		0.0679	[0.046-0.09] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45371187	45371188	rs41290102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs41290102-C	0.98651	2E-8		0.0969198	[0.063-0.131] unit decrease	NR [11722792] (imputed)	N
931	chr19	45371187	45371188	rs41290102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs41290102-C	0.98651	1E-8		0.0988864	[0.065-0.133] unit decrease	NR [11722792] (imputed)	N
931	chr19	45372328	45372329	rs17561351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs17561351-G	NR	4E-15		0.0402	[0.03-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45372328	45372329	rs17561351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs17561351-G	NR	1E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45372328	45372329	rs17561351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs17561351-G	NR	7E-18		0.0441	[0.034-0.054] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45372328	45372329	rs17561351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs17561351-G	NR	2E-11		0.0349	[0.025-0.045] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45372328	45372329	rs17561351	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs17561351-G	NR	4E-27		0.0553	[0.045-0.065] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45372328	45372329	rs17561351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.32	PVRL2	rs17561351-G	0.063576	5E-14		0.03503118	[0.026-0.044] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45372328	45372329	rs17561351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	PVRL2	rs17561351-G	0.0638220000000001	2E-11		0.030461371	[0.022-0.039] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45372328	45372329	rs17561351	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.32	PVRL2	rs17561351-G	0.0583	6E-10		0.0449143	[0.031-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45373564	45373565	rs395908	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs395908-?	NR	2E-19		2.138	[1.65-2.63] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45373564	45373565	rs395908	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs395908-?	NR	8E-22		2.227	[1.73-2.72] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45373564	45373565	rs395908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	NECTIN2	rs395908-?	NR	4E-18	(ApoB)	0.06060714	NR unit decrease	Illumina [609262]	N
931	chr19	45373564	45373565	rs395908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	NECTIN2	rs395908-?	NR	4E-17	(Remnant_C)	0.047290485	NR unit decrease	Illumina [609262]	N
931	chr19	45373564	45373565	rs395908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	NECTIN2	rs395908-?	NR	3E-14	(ApoB_ApoA1)	0.035026666	NR unit decrease	Illumina [609262]	N
931	chr19	45373564	45373565	rs395908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	NECTIN2	rs395908-?	NR	8E-6	(ApoB)	0.06602118	NR unit decrease	Illumina [609262]	N
931	chr19	45373564	45373565	rs395908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs395908-G	NR	6E-6		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45373564	45373565	rs395908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs395908-G	NR	3E-36		0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45373564	45373565	rs395908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs395908-G	0.846	4E-52	(EA)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45373564	45373565	rs395908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs395908-G	NR	1E-71		0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45373564	45373565	rs395908	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs395908-G	0.846	3E-97	(EA)	0.136	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45374982	45374983	rs141739979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs141739979-T	NR	2E-10		0.0787	[0.054-0.103] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45375584	45375585	rs187183066	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs187183066-G	NR	5E-9		0.0613	[0.041-0.082] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45376283	45376284	rs519113	23565137	Miyashita A	2013-04-02	PLoS One	SORL1 is genetically associated with late-onset Alzheimer's disease in Japanese, Koreans and Caucasians.	Alzheimer's disease (late onset)	891 Japanese ancestry cases, 844 Japanese ancestry controls	1,224 East Asian ancestry cases, 2,114 East Asian ancestry controls, 11,840 European ancestry cases, 10,931 European ancestry controls	19q13.32	APOE, CEACAM16, BCL3, PVRL2, TOMM40, PPP1R37	rs519113-G	0.29	5E-39	(Japanese)	2.09	[1.87-2.34]	Affymetrix [5877918] (imputed)	N
931	chr19	45376283	45376284	rs519113	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	HDL cholesterol	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19q13.32	APOE, PVRL2, TOMM40	rs519113-C	0.15	8E-11		0.0179	[0.012-0.023] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
931	chr19	45376316	45376317	rs11671274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.32	PVRL2	rs11671274-G	0.061174	2E-26		0.05017886	[0.041-0.059] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45377333	45377334	rs393584	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs393584-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45377841	45377842	rs41290108	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs41290108-G	0.960338	1E-25		0.0544411	[0.044-0.065] unit decrease	NR [NR]	N
931	chr19	45377841	45377842	rs41290108	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs41290108-C	0.03803	3E-13		7.317556	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45378718	45378719	rs11665676	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs11665676-T	0.05183	1E-19		9.089448	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45379059	45379060	rs387976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.32	NR	rs387976-C	0.352651	4E-11		0.013305	[0.0094-0.0173] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
931	chr19	45379430	45379431	rs138914864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs138914864-T	NR	6E-26		0.2507	[0.2-0.3] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379430	45379431	rs138914864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs138914864-T	NR	3E-33		0.2862	[0.24-0.33] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379430	45379431	rs138914864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs138914864-T	NR	8E-29		0.2652	[0.22-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45379430	45379431	rs138914864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs138914864-T	NR	8E-44		0.332	[0.29-0.38] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379430	45379431	rs138914864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs138914864-T	NR	3E-9		0.1488	[0.1-0.198] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45379515	45379516	rs412776	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs412776-?	NR	1E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45379515	45379516	rs412776	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs412776-?	NR	5E-15				Affymetrix [7795605] (imputed)	N
931	chr19	45379745	45379746	rs73050293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs73050293-G	NR	4E-18		0.0326	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379745	45379746	rs73050293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs73050293-G	NR	6E-29		0.0421	[0.035-0.05] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379745	45379746	rs73050293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs73050293-G	NR	3E-9		0.0223	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379745	45379746	rs73050293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73050293-G	NR	6E-37		0.0479	[0.04-0.055] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45379745	45379746	rs73050293	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs73050293-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45380334	45380335	rs77196615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs77196615-C	NR	4E-10		0.0596	[0.041-0.078] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45380960	45380961	rs3865427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs3865427-A	NR	4E-9		0.023	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45380960	45380961	rs3865427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs3865427-A	NR	3E-11		0.026	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45380960	45380961	rs3865427	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs3865427-A	NR	6E-20		0.0357	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45381291	45381292	rs150639620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs150639620-T	NR	3E-25		0.0589	[0.048-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45381291	45381292	rs150639620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs150639620-T	NR	1E-12		0.0413	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45381291	45381292	rs150639620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs150639620-T	NR	7E-26		0.0597	[0.049-0.071] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45381291	45381292	rs150639620	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs150639620-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45381305	45381313	rs143981846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.32	PVRL2	rs143981846-C	0.048641	5E-11		0.03471063	[0.024-0.045] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45382033	45382034	rs6859	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs6859-A	0.459	5E-27		1.374	[1.297-1.456]	NR [38043082] (imputed)	N
931	chr19	45382033	45382034	rs6859	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs6859-A	0.461	1E-13		1.314	[1.222-1.412]	NR [38043082] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	3E-236		0.0787	[0.074-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	4E-347		0.0956	[0.091-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	5E-16		0.0203	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	6E-115		0.0548	[0.05-0.06] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	2E-533		0.1187	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs6859-G	NR	2E-33		0.0303	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45382033	45382034	rs6859	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs6859-?	NR	4E-24		2.122	[1.71-2.54] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45382033	45382034	rs6859	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs6859-?	NR	8E-30		2.229	[1.81-2.64] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45382033	45382034	rs6859	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	NCTIN2	rs6859-A	0.47	7E-39		1.44	[1.36-1.52]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45382033	45382034	rs6859	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19q13.32		rs6859-A	0.4215	8E-37	(EA)	2.5748	[2.18-2.97] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45382033	45382034	rs6859	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs6859-A	0.433641	1E-9	(males)	1.677747	[1.42-1.94]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45382033	45382034	rs6859	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs6859-A	0.428373	2E-21		1.599071	[1.45-1.75]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45382033	45382034	rs6859	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs6859-A	0.42469	6E-13	(females)	1.570301	[1.39-1.75]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45382033	45382034	rs6859	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs6859-A	0.4218	1E-152		26.320562	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45382033	45382034	rs6859	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs6859-?	NR	6E-75				Affymetrix [7795605] (imputed)	N
931	chr19	45382033	45382034	rs6859	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs6859-?	NR	1E-155				Affymetrix [7795605] (imputed)	N
931	chr19	45382033	45382034	rs6859	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	19q13.32	PVRL2	rs6859-A	NR	5E-7		1.58	[NR]	Illumina [2505093] (imputed)	N
931	chr19	45382033	45382034	rs6859	20885792	Naj AC	2010-09-23	PLoS Genet	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	19q13.32	PVRL2	rs6859-A	0.46	1E-7		1.41	[1.24-1.60]	Illumina [483399]	N
931	chr19	45382033	45382034	rs6859	18823527	Abraham R	2008-09-29	BMC Med Genomics	A genome-wide association study for late-onset Alzheimer's disease using DNA pooling.	Alzheimer's disease	1,082 European ancestry cases, 1,239 European ancestry controls	1,400 controls	19q13.32	APOE, PVRL2, TOMM40	rs6859-A	NR	6E-14				Illumina [561494]	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-341		0.356634	[0.34-0.37] unit decrease	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	1E-325		0.360882	[0.34-0.38] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-358		0.374075	[0.36-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-352		0.372163	[0.35-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-333		0.371314	[0.35-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	5E-356		0.37244	[0.35-0.39] unit decrease	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-343		0.364025	[0.35-0.38] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	3E-389		0.382618	[0.36-0.4] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	9E-366		0.391666	[0.37-0.41] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	3E-362		0.38986	[0.37-0.41] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-406		0.400376	[0.38-0.42] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-326		0.347486	[0.33-0.37] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs41290120-G	0.950911	2E-333		0.372823	[0.35-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45382674	45382675	rs41290120	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOC1P1, APOC2, APOC4, APOC4-APOC2, APOE, BCAM, BCL3, BLOC1S3, CBLC, CEACAM16, CEACAM19, CEACAM22P, CLASRP, CLPTM1, EXOC3L2, GEMIN7, IGSF23, MIR4531, MIR8085, NKPD1, PPP1R37, PVR, PVRL2, RELB, TOMM40, TRAPPC6A, ZNF296	rs41290120-?		3E-36				NR [NR]	N
931	chr19	45382674	45382675	rs41290120	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	19q13.32	NR	rs41290120-A	0.0416	1E-500				Affymetrix, Illumina [at least 2500000] (imputed)	N
931	chr19	45382674	45382675	rs41290120	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs41290120-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45382716	45382717	rs406456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.32		rs406456-A	NR	3E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
931	chr19	45382716	45382717	rs406456	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	19q13.32	NECTIN2	rs406456-?		5E-6				Illumina [7405822] (imputed)	N
931	chr19	45382716	45382717	rs406456	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs406456-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45382965	45382966	rs3852860	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs3852860-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45382983	45382984	rs11669338	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11669338-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45383036	45383037	rs11673139	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	19q13.32	NECTIN2	rs11673139-A	0.909	7E-6	(EA)	0.164	[0.093-0.235] unit increase	Illumina [NR] (imputed)	N
931	chr19	45383036	45383037	rs11673139	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs11673139-A	NR	1E-18		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45383036	45383037	rs11673139	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs11673139-A	0.906	4E-18	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45383091	45383091	rs71171301	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs71171301-?	NR	5E-29		0.171993	unit increase	NR [10687077] (imputed)	N
931	chr19	45383829	45383830	rs148303016	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs148303016-C	0.94707	2E-39		0.0604872	[0.051-0.07] unit decrease	NR [NR]	N
931	chr19	45384115	45384116	rs406315	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOC1P1, APOC2, APOC4, APOC4-APOC2, APOE, BCAM, BCL3, CBLC, CLPTM1, MIR8085, PVRL2, RELB, TOMM40	rs406315-?		5E-50				NR [NR]	N
931	chr19	45384699	45384700	rs113743631	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	PVRL2	rs113743631-G	0.978579	3E-17		0.0637083	[0.049-0.079] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	3E-17		0.152766	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	5E-14		0.136038	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-14		0.138805	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-10		0.112007	[0.078-0.146] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-14		0.136679	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-21		0.16692	[0.13-0.2] unit increase	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	5E-22		0.173515	[0.14-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	3E-16		0.147878	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-15		0.144618	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	2E-9		0.103935	[0.07-0.138] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	7E-16		0.138213	[0.1-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	3E-11		0.11205	[0.079-0.145] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-19		0.163056	[0.13-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	2E-12		0.127104	[0.092-0.163] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	8E-13		0.129003	[0.094-0.164] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	1E-12		0.128679	[0.093-0.164] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	2E-13		0.132839	[0.097-0.168] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	8E-16		0.145537	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs79701229-G	0.986276	6E-12		0.123903	[0.089-0.159] unit decrease	NR [11722792] (imputed)	N
931	chr19	45384930	45384931	rs79701229	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs79701229-A	0.005	3E-8		3.326	[2.174-5.09]	NR [38043082] (imputed)	N
931	chr19	45384930	45384931	rs79701229	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19q13.32	PVRL2	rs79701229-A	0.012772	6E-12		0.17124923	[0.12-0.22] unit increase	Affymetrix [7288503] (imputed)	N
931	chr19	45384930	45384931	rs79701229	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	NCTIN2	rs79701229-A	0.006	2E-9		3.35	[2.26-4.95]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45384930	45384931	rs79701229	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	PVRL2	rs79701229-A	0.01276	1E-64		16.990263	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45385355	45385356	rs144261139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs144261139-A	NR	4E-90		0.2299	[0.21-0.25] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385355	45385356	rs144261139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs144261139-A	NR	4E-102		0.2454	[0.22-0.27] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385355	45385356	rs144261139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs144261139-A	NR	1E-109		0.2545	[0.23-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45385355	45385356	rs144261139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs144261139-A	NR	6E-132		0.2799	[0.26-0.3] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385355	45385356	rs144261139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs144261139-A	NR	6E-12		0.0826	[0.059-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45385355	45385356	rs144261139	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	NCTIN2	rs144261139-A	0.012	1E-10		2.37	[1.82-3.09]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	5E-50		0.0383	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	9E-78		0.0481	[0.043-0.053] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	6E-11		0.0188	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	3E-49		0.038	[0.033-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	1E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	1E-95		0.0535	[0.048-0.059] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs3745150-C	NR	2E-12		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45385758	45385759	rs3745150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.32	PVRL2, CTB-129P6.4	rs3745150-C	0.393096	3E-9		0.013501041	[0.009-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-19		0.365481	[0.29-0.44] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-22		0.404231	[0.32-0.48] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-21		0.390523	[0.31-0.47] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-15		0.315569	[0.24-0.39] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	7E-24		0.421952	[0.34-0.5] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	7E-21		0.389051	[0.31-0.47] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	7E-23		0.403368	[0.32-0.48] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-30		0.488913	[0.41-0.57] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-24		0.432915	[0.35-0.52] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-27		0.4564	[0.37-0.54] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-27		0.45974	[0.38-0.54] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	3E-26		0.438639	[0.36-0.52] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-17		0.357342	[0.28-0.44] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	9E-19		0.365369	[0.28-0.45] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	6E-24		0.428938	[0.35-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-18		0.364752	[0.28-0.45] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	7E-19		0.377172	[0.29-0.46] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-23		0.415482	[0.33-0.5] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-25		0.426301	[0.35-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-20		0.379402	[0.3-0.46] unit decrease	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	7E-16		0.330985	[0.25-0.41] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-42		0.580744	[0.5-0.66] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-28		0.473279	[0.39-0.56] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-28		0.468986	[0.39-0.55] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-31		0.49409	[0.41-0.58] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-21		0.394726	[0.31-0.48] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-27		0.463165	[0.38-0.55] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-24		0.414829	[0.34-0.49] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-19		0.370849	[0.29-0.45] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-16		0.334951	[0.26-0.41] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-15		0.317935	[0.24-0.4] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	9E-44		0.590614	[0.51-0.67] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	9E-33		0.508969	[0.43-0.59] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-30		0.481405	[0.4-0.56] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-33		0.505774	[0.42-0.59] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-25		0.427372	[0.35-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	9E-22		0.410202	[0.33-0.49] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-23		0.425806	[0.34-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	3E-23		0.424379	[0.34-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	3E-28		0.465822	[0.38-0.55] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-30		0.484889	[0.4-0.57] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-18		0.350904	[0.27-0.43] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-27		0.451945	[0.37-0.53] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-21		0.406388	[0.32-0.49] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-20		0.395883	[0.31-0.48] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-26		0.452406	[0.37-0.54] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-25		0.440532	[0.36-0.52] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-31		0.478787	[0.4-0.56] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-19		0.360124	[0.28-0.44] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	2E-20		0.384112	[0.3-0.47] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-14		0.303107	[0.22-0.38] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-19		0.369313	[0.29-0.45] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-25		0.433757	[0.35-0.52] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	3E-28		0.471262	[0.39-0.56] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	1E-18		0.376254	[0.29-0.46] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-24		0.433056	[0.35-0.52] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	5E-28		0.463879	[0.38-0.55] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	9E-30		0.467925	[0.39-0.55] unit increase	NR [11722792] (imputed)	N
931	chr19	45385917	45385918	rs3745151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs3745151-G	0.997549	4E-23		0.422656	[0.34-0.51] unit increase	NR [11722792] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	2E-37		0.0454	[0.038-0.052] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	8E-560		0.1794	[0.17-0.19] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-15		0.0285	[0.021-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	2E-738		0.2062	[0.2-0.21] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-62		0.0622	[0.055-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-16		0.0293	[0.022-0.036] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	8E-17		0.0296	[0.023-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-16		0.0294	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	4E-738		0.2062	[0.2-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-40		0.0476	[0.041-0.055] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	6E-1110		0.2527	[0.25-0.26] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	8E-120		0.0868	[0.08-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45386467	45386467	rs142042446	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs142042446-GTAA	NR	1E-25		0.0372	[0.03-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45387458	45387459	rs12972156	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	PVRL2, CTB-129P6.4	rs12972156-G	NR	8E-12		0.010441	[0.0074-0.0134] unit decrease	NR [16367095] (imputed)	N
931	chr19	45387458	45387459	rs12972156	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	PVRL2	rs12972156-G	0.13	4E-12		0.17	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45387595	45387596	rs12972970	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	PVRL2	rs12972970-A	0.13	4E-12		0.17	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45388129	45388130	rs34342646	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	PVRL2	rs34342646-A	0.13	2E-12		0.17	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45388240	45388241	rs283810	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs283810-?	NR	4E-29		4.262	[3.38-5.14] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45388240	45388241	rs283810	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs283810-?	NR	2E-23		4.17	[3.27-5.07] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45388240	45388241	rs283810	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs283810-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45388499	45388500	rs283811	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	19q13.32		rs283811-A	NR	3E-7		0.85	[0.8-0.91]	Illumina [7105229] (imputed)	N
931	chr19	45388499	45388500	rs283811	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs283811-?	NR	1E-13		0.065	[0.047-0.083] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45388499	45388500	rs283811	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	19q13.32	NR	rs283811-G	NR	7E-9	(AA)	1.34	[1.21-1.47]	NR [NR]	N
931	chr19	45388499	45388500	rs283811	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	19q13.32	NR	rs283811-G	NR	1E-15	(Japanese)	2.56	[2.02-3.24]	NR [NR]	N
931	chr19	45388567	45388568	rs283812	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in Alzheimer's disease dementia	190 European ancestry AD dementia cases	NA	19q13.32	PVRL2, CBLC, BCAM, TOMM40, APOE, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1	rs283812-C	0.29	3E-7		0.55	[0.35-0.75] unit decrease	Illumina [8344766] (imputed)	N
931	chr19	45388677	45388678	rs562961456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs562961456-T	0.997675	4E-29		0.481749	[0.4-0.57] unit increase	NR [11722792] (imputed)	N
931	chr19	45388677	45388678	rs562961456	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs562961456-T	0.997675	3E-20		0.382229	[0.3-0.46] unit increase	NR [11722792] (imputed)	N
931	chr19	45389173	45389174	rs283813	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs283813-?	NR	8E-28		0.20705	unit increase	NR [10687077] (imputed)	N
931	chr19	45389223	45389224	rs283814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs283814-G	NR	1E-40		0.0597	[0.051-0.069] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389223	45389224	rs283814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs283814-G	NR	2E-9		0.027	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389223	45389224	rs283814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs283814-G	NR	8E-27		0.0481	[0.039-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45389223	45389224	rs283814	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs283814-G	0.933446	9E-6		1.588872	[1.3-1.88]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45389223	45389224	rs283814	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs283814-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	1E-11		0.166414	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Hydroxycholesterol_[M+H-2H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	3E-11		0.176693	[0.12-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	2E-12		0.192682	[0.14-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	2E-16		0.229418	[0.17-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	9E-11		0.150886	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7254892-A	NR	2E-14		0.184831	[0.14-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	7E-66		0.1136	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	3E-835		0.408	[0.4-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	1E-1337		0.5153	[0.5-0.53] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	5E-50		0.1108	[0.096-0.125] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	7E-21		0.0647	[0.051-0.078] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	5E-18		0.0618	[0.048-0.076] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	2E-40		0.0884	[0.075-0.101] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	1E-2093		0.6466	[0.63-0.66] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs7254892-A	NR	2E-51		0.1046	[0.091-0.118] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19q13.32	NR	rs7254892-?	NR	3E-23		0.328	[0.26-0.39] unit decrease	Illumina [1770809] (imputed)	N
931	chr19	45389595	45389596	rs7254892	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	19q13.32	NR	rs7254892-?	NR	2E-38		0.459	[0.39-0.53] unit decrease	Illumina [1770809] (imputed)	N
931	chr19	45389595	45389596	rs7254892	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	19q13.32		rs7254892-A	0.039	4E-8	(EA)	0.0468	[0.03-0.063] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45389595	45389596	rs7254892	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19q13.32		rs7254892-A	0.0623	2E-136		12.8991	[11.88-13.92] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45389595	45389596	rs7254892	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs7254892-A	0.07	1E-51	(Asian initial, BMI unadjusted)	0.4	[0.35-0.45] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
931	chr19	45389595	45389596	rs7254892	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs7254892-A	0.07	4E-22	(BMI unadjusted)	0.408	[0.33-0.49] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
931	chr19	45390332	45390333	rs283815	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	PVRL2	rs283815-?	0.753336	9E-23	(males)	2.794014		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45390332	45390333	rs283815	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	PVRL2	rs283815-G	0.23	9E-11		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45392253	45392254	rs6857	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	19q13.32	NR	rs6857-T		6E-132		1.6742	[1.54-1.81] unit increase	Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	PVRL2	rs6857-C	0.829568	1E-711		0.157677	[0.15-0.16] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs6857-?	NR	4E-10		0.0201864	[0.014-0.026] unit decrease	Affymetrix [25921788] (imputed)	N
931	chr19	45392253	45392254	rs6857	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs6857-?	NR	3E-10		0.0203136	[0.014-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
931	chr19	45392253	45392254	rs6857	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs6857-?	NR	3E-98		6.459	[5.83-7.08] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45392253	45392254	rs6857	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	19q13.32	APOC1	rs6857-?	NR	2E-35		0.0197	[0.016-0.023] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45392253	45392254	rs6857	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs6857-?	NR	7E-23				Affymetrix [~ 8270000] (imputed)	N
931	chr19	45392253	45392254	rs6857	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19q13.32	NR	rs6857-T	0.1716	3E-19		0.029516095	[0.023-0.036] unit decrease	Affymetrix [10549349] (imputed)	N
931	chr19	45392253	45392254	rs6857	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Cognitive impairment	355 European ancestry cases, 6,190 European ancestry controls	NA	19q13.32		rs6857-C	0.14	4E-12		1.79	[1.38-2.53]	Illumina [19468843] (imputed)	N
931	chr19	45392253	45392254	rs6857	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	19q13.32		rs6857-C	0.16	2E-7		2.1	[1.53-3.37] unit increase	Illumina [19468843] (imputed)	N
931	chr19	45392253	45392254	rs6857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.32		rs6857-?	NR	3E-23				NR [~ 8900000] (imputed)	N
931	chr19	45392253	45392254	rs6857	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	PVRL2	rs6857-T	0.2	2E-20		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45392253	45392254	rs6857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.32	NA	rs6857-T	0.1656	6E-26		0.0246	[0.02-0.029] unit decrease	NR [~ 27400000] (imputed)	N
931	chr19	45392253	45392254	rs6857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q13.32	NA	rs6857-T	0.1656	6E-26		0.0246	[0.02-0.029] unit decrease	NR [~ 27400000] (imputed)	N
931	chr19	45392253	45392254	rs6857	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	19q13.32	NR	rs6857-T	NR	7E-18	(Japanese)	3.22	[2.45-4.24]	NR [NR]	N
931	chr19	45392253	45392254	rs6857	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	19q13.32	NR	rs6857-T	NR	6E-7	(AA)	1.27	[1.15-1.40]	NR [NR]	N
931	chr19	45392253	45392254	rs6857	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	19q13.32	TOMM40, APOE	rs6857-C	0.844	7E-9		1.12	[1.08-1.16]	NR [at least 8497425] (imputed)	N
931	chr19	45392253	45392254	rs6857	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19q13.32	TOMM40, APOE, APOC1, SH2B1, APOB48R	rs6857-C	0.83	7E-9		0.048	[0.032-0.064] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
931	chr19	45392253	45392254	rs6857	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19q13.32	TOMM40, APOE, APOC1, SH2B1, APOB48R	rs6857-C	0.83	7E-7	(women)	0.058	[0.035-0.081] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
931	chr19	45392253	45392254	rs6857	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19q13.32	TOMM40, APOE	rs6857-C	0.83	7E-10	(European)	0.053	[0.035-0.071] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
931	chr19	45392253	45392254	rs6857	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	19q13.32	TOMM40, APOE	rs6857-C	0.83	2E-7	(European women)	0.062	[0.038-0.086] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
931	chr19	45392253	45392254	rs6857	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA	19q13.32	PVRL2	rs6857-T	0.13	8E-6		1.7	[1.46-1.94]	Illumina [2292247] (imputed)	N
931	chr19	45392253	45392254	rs6857	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	PVRL2, TOMM40	rs6857-T	0.16	4E-13	(PAR-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	PVRL2, TOMM40	rs6857-T	0.16	4E-13	(PAR-dr)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	19q13.32	PVRL2	rs6857-T	0.3285	5E-47	(Ordinal I)	0.6632	[0.57-0.75] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	19q13.32	PVRL2	rs6857-T	0.3219	5E-44	(Ordinal II)	0.7871	[0.68-0.9] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	19q13.32	PVRL2	rs6857-T	0.3155	3E-47	(Ordinal)	0.9467	[0.82-1.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	19q13.32	PVRL2	rs6857-T	0.2661	2E-27	(Case/control)	1.2932	[1.06-1.53] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	19q13.32	PVRL2	rs6857-T	0.2883	2E-62	(Primary)	1.6136	[1.42-1.8] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	19q13.32	PVRL2	rs6857-T	0.2864	3E-38	(Complete)	1.501	[1.27-1.73] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Cerebral amyloid angiopathy	1,673 cases, 1,134 controls	NA	19q13.32	PVRL2	rs6857-T	0.3429	3E-21		0.6708	[0.53-0.81] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45392253	45392254	rs6857	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	19q13.32	PVRL2	rs6857-T	0.28	1E-10	(Cortical Ab)			Illumina [6108668] (imputed)	N
931	chr19	45392253	45392254	rs6857	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	PVRL2	rs6857-?	0.85	1E-6	(EA)	1.23	[1.14-1.35]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45392253	45392254	rs6857	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	APOE, PVRL2, TOMM40	rs6857-?	0.85	1E-6		1.23	[1.14-1.35]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs117310449-C	0.988015	6E-21		0.177991	[0.14-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45393515	45393516	rs117310449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs117310449-C	0.988015	9E-16		0.147837	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
931	chr19	45393515	45393516	rs117310449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs117310449-C	0.988015	1E-25		0.199561	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
931	chr19	45393515	45393516	rs117310449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs117310449-C	0.988015	5E-25		0.197057	[0.16-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45393515	45393516	rs117310449	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs117310449-C	0.988015	2E-22		0.185068	[0.15-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45393515	45393516	rs117310449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs117310449-T	NR	2E-98		0.2453	[0.22-0.27] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs117310449-T	NR	2E-112		0.2627	[0.24-0.29] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs117310449-T	NR	4E-112		0.2624	[0.24-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs117310449-T	NR	5E-146		0.3004	[0.28-0.32] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs117310449-T	NR	2E-14		0.0934	[0.069-0.117] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45393515	45393516	rs117310449	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs117310449-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45394203	45394204	rs561654715	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of mother: Alzheimer's disease/dementia (UKB data field 20110_10)	36,155 European ancestry cases, 381,650 European ancestry controls	NA	19q13.32		rs561654715-A	0.002653	6E-17		0.68	[0.52-0.84] unit increase	NR [11842647] (imputed)	N
931	chr19	45394203	45394204	rs561654715	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs561654715-A	0.002832	9E-19		8.842536	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45394210	45394211	rs76692773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs76692773-T	NR	7E-20		0.0417	[0.033-0.051] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45394210	45394211	rs76692773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs76692773-T	NR	4E-31		0.053	[0.044-0.062] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45394210	45394211	rs76692773	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs76692773-T	NR	2E-36		0.0578	[0.049-0.067] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45394210	45394211	rs76692773	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	TOMM40	rs76692773-C	0.937	4E-9		1.4084507	[1.27-1.59]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45394210	45394211	rs76692773	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs76692773-T	0.07319	9E-24		10.04716	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45394335	45394336	rs71352238	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs71352238-?	NR	7E-69		3.181876		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45394335	45394336	rs71352238	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs71352238-?	NR	6E-38	(females)	3.0343766		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45394335	45394336	rs71352238	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs71352238-?	NR	2E-25	(males)	3.295186		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45394335	45394336	rs71352238	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs71352238-C	0.16	6E-14		0.12	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45394968	45394969	rs184017	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs184017-G	0.24	3E-10		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45395265	45395266	rs157580	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs157580-?	NR	9E-10	(VLDL_C)	0.04846996	NR unit decrease	Illumina [609262]	N
931	chr19	45395265	45395266	rs157580	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs157580-?	NR	8E-10	(XS_VLDL_L)	0.06613439	NR unit decrease	Illumina [609262]	N
931	chr19	45395265	45395266	rs157580	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs157580-?	NR	3E-11	(XS_VLDL_PL)	0.06327345	NR unit decrease	Illumina [609262]	N
931	chr19	45395265	45395266	rs157580	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs157580-?	NR	2E-8	(XS_VLDL_PL)	0.06672533	NR unit decrease	Illumina [609262]	N
931	chr19	45395265	45395266	rs157580	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs157580-?	NR	1E-7	(XS_VLDL_L)	0.07808613	NR unit decrease	Illumina [609262]	N
931	chr19	45395265	45395266	rs157580	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs157580-?	NR	2E-7		0.02426241	[0.015-0.033] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45395265	45395266	rs157580	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157580-?	NR	6E-14	(females)	1.6891578		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395265	45395266	rs157580	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157580-?	NR	4E-9	(males)	1.7230357		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395265	45395266	rs157580	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157580-?	NR	4E-23		1.7063565		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395265	45395266	rs157580	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs157580-G	0.3949	8E-220		31.6502	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45395265	45395266	rs157580	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs157580-?		5E-8		0.06041999	[NR] unit increase	Illumina [575353]	N
931	chr19	45395265	45395266	rs157580	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs157580-?		1E-7		0.006314825	[NR] unit increase	Illumina [575353]	N
931	chr19	45395265	45395266	rs157580	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs157580-?	NR	6E-120				Affymetrix [7795605] (imputed)	N
931	chr19	45395265	45395266	rs157580	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs157580-?	NR	2E-208				Affymetrix [7795605] (imputed)	N
931	chr19	45395265	45395266	rs157580	21627779	Antunez C	2011-05-31	Genome Med	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls	19q13.32	APOE	rs157580-?	NR	8E-89		1.69	[NR]	Affymetrix, Illumina [696707] (imputed)	N
931	chr19	45395265	45395266	rs157580	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	TOMM40	rs157580-?	NR	1E-6	(AB1-42)			Illumina [322557]	N
931	chr19	45395265	45395266	rs157580	19125160	Feulner TM	2009-01-07	Mol Psychiatry	Examination of the current top candidate genes for AD in a genome-wide association study.	Alzheimer's disease	491 European ancestry cases, 479 European ancestry controls	NA	19q13.32	APOE, TOMM40	rs157580-?	NR	1E-40				Illumina [~ 550000]	N
931	chr19	45395265	45395266	rs157580	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	19q13.32	APOE, TOMM40	rs157580-G	0.33	2E-19		0.11	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
931	chr19	45395265	45395266	rs157580	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	19q13.32	APOE, TOMM40	rs157580-G	0.33	4E-7		0.06	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
931	chr19	45395265	45395266	rs157580	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	19q13.32	APO cluster	rs157580-G	0.29	5E-8		0.11	[0.07-0.15] mmol/l decrease	Illumina [329091]	N
931	chr19	45395618	45395619	rs2075650	35046404	Chou WC	2022-01-19	NPJ Genom Med	A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4.	Hyperlipidemia	3,310 Taiwanese ancestry cases, 6,404 Taiwanese ancestry controls	829 Taiwanese ancestry cases, 1,833 Taiwanese ancestry controls	19q13.32		rs2075650-?	NR	3E-13		1.43	[1.3-1.58]	Affymetrix [597758]	N
931	chr19	45395618	45395619	rs2075650	34336000	Li L	2021-07-14	Behav Neurol	Use of Deep-Learning Genomics to Discriminate Healthy Individuals from Those with Alzheimer's Disease or Mild Cognitive Impairment.	Alzheimer's disease	622 cases, 366 controls	NA	19q13.32		rs2075650-?	NR	7E-17		2.737		Illumina [NR]	N
931	chr19	45395618	45395619	rs2075650	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	19q13.32	TOMM40	rs2075650-G	NR	6E-10		0.2934	[0.2-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and triglycerides (pairwise)	393,171 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-26				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and coronary artery disease (pairwise)	357,224 European ancestry individuals, 53,724 East Asian, South Asian, Middle Eastern, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	7E-13				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and LDL-C (pairwise)	388,392 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-235				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and HDL-C (pairwise)	402,477 European ancestry individuals, 11,333 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	1E-32				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	1E-23				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	1E-14				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and LDL-C (pairwise)	495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-237				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-29				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-25				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and coronary artery disease (pairwise)	232,558 European ancestry individuals, 52,463 East Asian, South Asian, Middle Eastern, Hispanic and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	2E-10				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	1E-234				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.8688	4E-33				Affymetrix, Illumina [2331072] (imputed)	N
931	chr19	45395618	45395619	rs2075650	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	19q13.32	NR	rs2075650-?	NR	2E-22		0.1232115	[0.098-0.148] unit decrease	Illumina [30861016] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs2075650-?	NR	8E-26	(males)	3.2904043		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs2075650-?	NR	2E-71		3.2239969		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs2075650-?	NR	1E-39	(females)	3.1072497		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs2075650-G	0.17	1E-15		0.13	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs2075650-?		9E-9		2.722685	[NR] unit decrease	Illumina [575353]	N
931	chr19	45395618	45395619	rs2075650	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs2075650-?		2E-18		0.113894	[NR] unit decrease	Illumina [575353]	N
931	chr19	45395618	45395619	rs2075650	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs2075650-?		5E-17		0.01178979	[NR] unit decrease	Illumina [575353]	N
931	chr19	45395618	45395619	rs2075650	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs2075650-?		8E-15		260.5766	[NR] unit increase	Illumina [575353]	N
931	chr19	45395618	45395619	rs2075650	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q13.32	NA	rs2075650-A	0.8566	7E-26		0.0245	[0.02-0.029] unit increase	NR [~ 27400000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q13.32	NR	rs2075650-A	NR	1E-13		0.027	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
931	chr19	45395618	45395619	rs2075650	29107063	Yashin AI	2017-10-26	Exp Gerontol	Hidden heterogeneity in Alzheimer's disease: Insights from genetic association studies and other analyses.	Alzheimer's disease (age of onset)	12,169 European ancestry individuals, 2,078 Black individuals, 4,053 unknown ancestry individuals	NA	19q13.32	TOMM40	rs2075650-?	NR	5E-7		1.5	[NR]	Illumina [up to 1329158]	N
931	chr19	45395618	45395619	rs2075650	29107063	Yashin AI	2017-10-26	Exp Gerontol	Hidden heterogeneity in Alzheimer's disease: Insights from genetic association studies and other analyses.	Alzheimer's disease	at least 3,569 European, Black, and unknown ancestry cases, at least 19,085 European, Black, and unknown ancestry controls	NA	19q13.32	TOMM40	rs2075650-?		2E-7		1.5	[NR]	Illumina [up to 1329158]	N
931	chr19	45395618	45395619	rs2075650	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs2075650-?		4E-17				Illumina [563980]	N
931	chr19	45395618	45395619	rs2075650	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs2075650-?		3E-8				Illumina [563980]	N
931	chr19	45395618	45395619	rs2075650	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid AB1-42 levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs2075650-?		3E-22				Illumina [563980]	N
931	chr19	45395618	45395619	rs2075650	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	TOMM40	rs2075650-A	0.8558	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19q13.32	TOMM40	rs2075650-A	0.8558	4E-7		0.0295	[0.018-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	TOMM40	rs2075650-A	0.8558	6E-6		0.0234	[0.013-0.034] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	19q13.32	APOE, TOMM40	rs2075650-?	NR	6E-14		2.03167	[1.67959-2.45755]	Illumina [~ 5900000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	19q13.32	TOMM40	rs2075650-A	0.13	4E-6		0.04	[0.02-0.06] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
931	chr19	45395618	45395619	rs2075650	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q13.32	NR	rs2075650-A	0.847998234602839	4E-10		0.025690204	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	TOMM40	rs2075650-A	0.85	3E-9		0.026	[0.017-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
931	chr19	45395618	45395619	rs2075650	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	TOMM40	rs2075650-A	0.849	1E-7	(EA, women)	0.031	[0.02-0.042] kg/m2 increase	Affymetrix, Illumina [2550021]	N
931	chr19	45395618	45395619	rs2075650	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	TOMM40	rs2075650-A	0.848	1E-8	(EA)	0.026	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
931	chr19	45395618	45395619	rs2075650	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	TOMM40	rs2075650-A	0.8482	6E-9	(EA)	0.0286	[0.019-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
931	chr19	45395618	45395619	rs2075650	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	TOMM40	rs2075650-A	0.8482	2E-6	(EA, women)	0.0308	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
931	chr19	45395618	45395619	rs2075650	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	TOMM40	rs2075650-A	0.8481	9E-10	(EA)	0.0307	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
931	chr19	45395618	45395619	rs2075650	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	TOMM40	rs2075650-A	0.8481	3E-8	(EA, women)	0.0362	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
931	chr19	45395618	45395619	rs2075650	24770881	Nelson PT	2014-04-27	Acta Neuropathol	ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.	Alzheimer's disease	1443 cases and 99 controls	NA	19q13.32	APOE, TOMM40	rs2075650-?	NR	4E-13				NR [4913579] (imputed)	N
931	chr19	45395618	45395619	rs2075650	24755620	Perez-Palma E	2014-04-22	PLoS One	Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.	Alzheimer's disease	2,540 European ancestry cases, 2,029 European ancestry controls	NA	19q13.32	APOE, BCAM, PVR, EXOC3L2, TOMM40, PVRL2, BCL3, APOC1	rs2075650-G		9E-116		4.48	[NR]	Affymetrix, Illumina [1216213] (imputed)	N
931	chr19	45395618	45395619	rs2075650	23844046	Dorajoo R	2013-07-02	PLoS One	Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?	C-reactive protein	2,179 Chinese ancestry individuals, 2,275 Malay ancestry individuals, 2,238 Asian Indian ancestry individuals	NA	19q13.32	APOE	rs2075650-G	0.122	2E-21		0.116	[NR] unit increase	Illumina [up to 1745429] (imputed)	N
931	chr19	45395618	45395619	rs2075650	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	APOE, TOMM40	rs2075650-A	0.86	3E-6		1.21	[1.11 - 1.32]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	19q13.32	APOE, TOMM40	rs2075650-A	0.86	1E-6	(EA)	1.23	[1.13-1.34]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	23207651	Davies G	2012-12-04	Mol Psychiatry	A genome-wide association study implicates the APOE locus in nonpathological cognitive ageing.	Cognitive decline	3,280 European ancestry individuals	1,367 European ancestry individuals	19q13.32	TOMM40	rs2075650-G	NR	2E-8		0.2	[0.12-0.28] unit decrease	Illumina [549692]	N
931	chr19	45395618	45395619	rs2075650	22694956	Cipriani V	2012-06-13	Hum Mol Genet	Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.	Age-related macular degeneration	893 European ancestry cases, 2,199 European ancestry controls	1,411 European ancestry cases, 1,431 European ancestry controls	19q13.32	TOMM40	rs2075650-A	0.851	8E-8		1.37	[1.22-1.54]	Illumina [2272849] (imputed)	N
931	chr19	45395618	45395619	rs2075650	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19q13.32	TOMM40	rs2075650-G	0.15	4E-8	(CRP)	0.116	[0.075-0.157] unit decrease	Illumina [NR] (imputed)	N
931	chr19	45395618	45395619	rs2075650	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	19q13.32	TOMM40	rs2075650-G	0.15	2E-14	(LDL)	0.153	[0.11-0.19] mmol/l increase	Illumina [NR] (imputed)	N
931	chr19	45395618	45395619	rs2075650	21418511	Deelen J	2011-03-21	Aging Cell	Genome-wide association study identifies a single major locus contributing to survival into old age; the APOE locus revisited.	Longevity	403 European ancestry cases, 1,670 European ancestry controls	1,578 European ancestry cases, 1,997 European ancestry controls, 2,168 cases, 3,915 controls	19q13.32	APOE, TOMM40	rs2075650-?	0.855	3E-17		1.41	[1.30-1.54]	Illumina [516721]	N
931	chr19	45395618	45395619	rs2075650	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	TOMM40	rs2075650-?	NR	1E-6	(p-tau181p/AB1-42, t-tau/AB1-42)			Illumina [322557]	N
931	chr19	45395618	45395619	rs2075650	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	19q13.32	TOMM40	rs2075650-G	NR	3E-7	(Controls)			Illumina [498205]	N
931	chr19	45395618	45395619	rs2075650	20885792	Naj AC	2010-09-23	PLoS Genet	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	19q13.32	APOE, TOMM40	rs2075650-G	0.20	5E-36		2.94	[2.48-3.47]	Illumina [483399]	N
931	chr19	45395618	45395619	rs2075650	20460622	Seshadri S	2010-05-12	JAMA	Genome-wide analysis of genetic loci associated with Alzheimer disease.	Alzheimer's disease	973 incident AD cases, 2,033 prevalent AD cases, 22,604  controls of European and Hispanic ancestry	6,505 European ancestry cases, 13,532 European ancestry controls	19q13.32	APOE	rs2075650-G	0.14	1E-295		2.53	[2.41-2.66]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45395618	45395619	rs2075650	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	19q13.32	TOMM40	rs2075650-?	NR	1E-7	(multiple phenotypes)			Illumina [530992]	N
931	chr19	45395618	45395619	rs2075650	20061627	Heinzen EL	2009-09-11	J Alzheimers Dis	Genome-wide scan of copy number variation in late-onset Alzheimer's disease.	Alzheimer's disease	331 European ancestry cases, 368 European ancestry controls	NA	19q13.32	APOE, TOMM40	rs2075650-?	0.15	3E-11				Illumina [~ 550000]	N
931	chr19	45395618	45395619	rs2075650	19734903	Lambert JC	2009-09-06	Nat Genet	Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer's disease.	Alzheimer's disease	2,032 European ancestry cases, 5,328 European ancestry controls	3,978 European ancestry cases, 3,297 European ancestry controls	19q13.32	APOE	rs2075650-?	0.90	2E-16				Illumina [537029]	N
931	chr19	45395618	45395619	rs2075650	19734902	Harold D	2009-09-06	Nat Genet	Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.	Alzheimer's disease	3,941 European ancestry cases, 7,848 European ancestry controls	2,023 European ancestry cases, 2,340 European ancestry controls	19q13.32	APOE, TOMM40	rs2075650-?	0.15	2E-157		2.53	[2.37-2.71]	Illumina [529205]	N
931	chr19	45395618	45395619	rs2075650	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	19q13.32	APOE, TOMM40	rs2075650-G	0.15	3E-19		0.14	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
931	chr19	45395618	45395619	rs2075650	18439552	Reiner AP	2008-04-24	Am J Hum Genet	Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein.	C-reactive protein	909 European ancestry individuals	5,106 European ancestry individuals	19q13.32	APOE	rs2075650-?	NR	1E-7				Illumina [317000]	N
931	chr19	45395713	45395714	rs157581	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs157581-C	0.28	9E-12		0.1	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45395815	45395816	rs73936968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs73936968-A	NR	3E-12		0.0546	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395815	45395816	rs73936968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs73936968-A	NR	4E-13		0.0569	[0.042-0.072] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395815	45395816	rs73936968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73936968-A	NR	5E-14		0.0589	[0.044-0.074] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	8E-15		0.0311	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	6E-365		0.1633	[0.16-0.17] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	1E-10		0.0259	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	3E-492		0.1899	[0.18-0.2] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	2E-41		0.0566	[0.048-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	4E-10		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	6E-14		0.03	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	3E-10		0.0253	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	8E-503		0.1919	[0.18-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	2E-32		0.0477	[0.04-0.056] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	2E-747		0.2341	[0.23-0.24] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	2E-79		0.0793	[0.071-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs34095326-A	NR	2E-22		0.039	[0.031-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45395843	45395844	rs34095326	33134509	Tang ME	2020-09-10	Neurol Genet	Matrix metalloproteinase-degraded type I collagen is associated with APOE/TOMM40 variants and preclinical dementia.	Serum type 1 collagen metabolite levels	4,891 Danish ancestry individuals	NA	19q13.32	TOMM40	rs34095326-A	0.12	7E-9		0.123	[0.084-0.162] unit decrease	Illumina [7672338] (imputed)	N
931	chr19	45395843	45395844	rs34095326	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs34095326-A	0.11	2E-10		0.12	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45395908	45395909	rs34404554	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs34404554-G	0.16	2E-15		0.13	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45396143	45396144	rs11556505	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs11556505-T	0.17	2E-15		0.13	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45396218	45396219	rs157582	31760383	Guo Y	2019-11-23	Aging (Albany NY)	Genome-wide association study of hippocampal atrophy rate in non-demented elders.	Hippocampal atrophy rate	602 European ancestry elderly individuals	NA	19q13.32	TOMM40	rs157582-T	0.2937	3E-8		0.005351	unit decrease	Illumina [695203]	N
931	chr19	45396218	45396219	rs157582	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	19q13.32	NECTIN2	rs157582-?	NR	9E-32		0.03409	[0.028-0.04] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45396218	45396219	rs157582	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	TOMM40	rs157582-T	NR	8E-16		0.010567	[0.008-0.0131] unit decrease	NR [16367095] (imputed)	N
931	chr19	45396218	45396219	rs157582	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs157582-?	NR	4E-11		0.02859047	[0.02-0.037] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45396218	45396219	rs157582	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157582-?	NR	4E-63		2.7341528		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45396218	45396219	rs157582	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157582-?	NR	2E-35	(females)	2.6219604		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45396218	45396219	rs157582	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs157582-?	NR	1E-23	(males)	2.8279662		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45396218	45396219	rs157582	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs157582-T	0.28	9E-12		0.1	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45396218	45396219	rs157582	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	Intergenic	rs157582-?		2E-6		2.013008	[NR] unit decrease	Illumina [575353]	N
931	chr19	45396218	45396219	rs157582	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs157582-?		3E-21		0.1078951	[NR] unit decrease	Illumina [575353]	N
931	chr19	45396218	45396219	rs157582	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs157582-?		3E-20		0.01134657	[NR] unit decrease	Illumina [575353]	N
931	chr19	45396218	45396219	rs157582	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	TOMM40	rs157582-?		2E-15		235.5824	[NR] unit increase	Illumina [575353]	N
931	chr19	45396218	45396219	rs157582	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall change)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	19q13.32	TOMM40, APOE, PVRL2	rs157582-A	NR	8E-10			unit decrease	Illumina [at least 1198956] (imputed)	N
931	chr19	45396218	45396219	rs157582	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs157582-?		2E-16				Illumina [563980]	N
931	chr19	45396218	45396219	rs157582	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs157582-?		4E-7				Illumina [563980]	N
931	chr19	45396218	45396219	rs157582	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid AB1-42 levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	TOMM40	rs157582-?		1E-23				Illumina [563980]	N
931	chr19	45396218	45396219	rs157582	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs157582-T	0.19	2E-10	(Asian initial, BMI unadjusted)	0.108	[0.075-0.141] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
931	chr19	45396218	45396219	rs157582	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	19q13.32	APOE	rs157582-T	0.18	4E-22		0.078	[0.062-0.094] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
931	chr19	45396218	45396219	rs157582	26421299	Li J	2015-09-03	Biomed Res Int	Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort.	Cingulate cortical amyloid beta load	215 European ancestry early mild cognitive impairment cases, 152 European ancestry late mild cognitive impairment cases, 45 European ancestry Alzheimer disease cases, 190  European ancestry controls	NA	19q13.32	TOMM40	rs157582-?	NR	4E-16				Illumina [582718]	N
931	chr19	45396218	45396219	rs157582	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	19q13.32	APOE, TOMM40	rs157582-T	0.22	1E-8	(TG)	0.1	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
931	chr19	45396218	45396219	rs157582	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	19q13.32	APOE	rs157582-?	0.26	9E-52		2.3	[NR]	Illumina [1847262] (imputed)	N
931	chr19	45396664	45396665	rs59007384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.32	TOMM40	rs59007384-T	NR	5E-12		0.0242081	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45396664	45396665	rs59007384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.32	TOMM40	rs59007384-T	NR	1E-11		0.0238184	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45396664	45396665	rs59007384	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs59007384-T	0.25	3E-13		0.11	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45396664	45396665	rs59007384	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	19q13.32	TOMM40	rs59007384-T	0.32	7E-9	(Cortical Ab)			Illumina [6108668] (imputed)	N
931	chr19	45396972	45396973	rs77301115	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOC1P1, APOC2, APOC4, APOC4-APOC2, APOE, BCAM, BCL3, CBLC, CEACAM16, CEACAM19, CLASRP, CLPTM1, GEMIN7, IGSF23, MIR4531, MIR8085, PPP1R37, PVR, PVRL2, RELB, TOMM40, ZNF296	rs77301115-?		7E-74				NR [NR]	N
931	chr19	45397228	45397229	rs1160983	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	19q13.32		rs1160983-A	NR	9E-14		0.266	unit decrease	Illumina [NR] (imputed)	N
931	chr19	45397228	45397229	rs1160983	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs1160983-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
931	chr19	45397951	45397952	rs116881820	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19q13.32	TOMM40	rs116881820-C	0.025925	1E-30		0.20294493	[0.17-0.24] unit increase	Affymetrix [7288503] (imputed)	N
931	chr19	45398013	45398014	rs114083252	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs114083252-?	NR	2E-8		0.216	[0.13-0.3] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45398205	45398206	rs157587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs157587-G	NR	3E-12		0.2077	[0.15-0.27] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398263	45398264	rs157588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs157588-C	0.636	7E-10	(East Asian)	0.103	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45398263	45398264	rs157588	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs157588-C	NR	9E-7		0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45398632	45398633	rs11668327	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs11668327-C	0.127	4E-20		0.65	[0.593-0.712]	NR [38043082] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	4E-514		0.1603	[0.15-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	3E-11		0.0222	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	8E-15		0.0258	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	3E-719		0.1897	[0.18-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	4E-11		0.0229	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	2E-9		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	7E-122		0.0778	[0.071-0.084] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	1E-1022		0.2265	[0.22-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs11668327-C	NR	3E-38		0.045	[0.038-0.052] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45398632	45398633	rs11668327	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.32	APOE	rs11668327-?	NR	9E-57		5.155	[4.47-5.84] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45398632	45398633	rs11668327	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11668327-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45399164	45399165	rs147707133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs147707133-G	NR	3E-10		0.0619	[0.043-0.081] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399164	45399165	rs147707133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs147707133-G	NR	4E-20		0.0903	[0.071-0.11] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399343	45399344	rs75687619	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs75687619-G	0.974033	2E-38		0.165741	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	2E-28		0.0859	[0.071-0.101] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	5E-183		0.224	[0.21-0.24] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	1E-207		0.239	[0.22-0.25] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	2E-11		0.0543	[0.038-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	2E-191		0.2294	[0.21-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	1E-14		0.0604	[0.045-0.076] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	4E-281		0.2788	[0.26-0.29] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45399895	45399896	rs76366838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs76366838-A	NR	1E-27		0.0887	[0.073-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45400724	45400725	rs114536010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs114536010-C	0.974001	1E-17		0.106969	[0.082-0.132] unit increase	NR [11722792] (imputed)	N
931	chr19	45400746	45400747	rs61679753	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs61679753-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45401665	45401666	rs8106922	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	TOMM40	rs8106922-?	NR	4E-11	(XS_VLDL_FC)	0.063749276	NR unit increase	Illumina [609262]	N
931	chr19	45401665	45401666	rs8106922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs8106922-?	NR	2E-8		2.052839	[1.33-2.77] unit increase	Illumina [32003504] (imputed)	N
931	chr19	45401665	45401666	rs8106922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs8106922-?	NR	3E-10		2.079804	[1.43-2.73] unit increase	Illumina [31808917] (imputed)	N
931	chr19	45401665	45401666	rs8106922	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs8106922-A	0.618134	6E-14	(females)	1.62673	[1.43-1.82]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45401665	45401666	rs8106922	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs8106922-A	0.615581	2E-20		1.624312	[1.47-1.78]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45401665	45401666	rs8106922	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs8106922-A	0.611921	6E-8	(males)	1.6359	[1.37-1.9]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45401665	45401666	rs8106922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs8106922-A	NR	5E-11		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45401665	45401666	rs8106922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs8106922-A	0.598	6E-16	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45401665	45401666	rs8106922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs8106922-A	NR	1E-16		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45401665	45401666	rs8106922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs8106922-A	0.674	7E-10	(East Asian)	0.11	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45401665	45401666	rs8106922	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs8106922-A	0.598	7E-24	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45401782	45401783	rs56290633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs56290633-T	0.460474	2E-8		0.0245979	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
931	chr19	45401782	45401783	rs56290633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs56290633-T	0.460474	4E-8		0.0239742	[0.015-0.033] unit decrease	NR [11722792] (imputed)	N
931	chr19	45401867	45401868	rs118170342	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs118170342-T	0.959232	2E-33		0.126664	[0.11-0.15] unit decrease	NR [11722792] (imputed)	N
931	chr19	45402469	45402470	rs490243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs490243-T	NR	1E-10		0.2338	[0.16-0.31] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45402469	45402470	rs490243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs490243-T	NR	5E-15		0.2863	[0.21-0.36] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45402717	45402718	rs35568738	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	TOMM40	rs35568738-G	0.953	9E-10		1.4925373	[1.32-1.69]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45402717	45402718	rs35568738	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs35568738-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45403215	45403216	rs115881343	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	19q13.32	TOMM40	rs115881343-?	0.026	4E-9	(EA)	0.044	[.02931-.0585] unit decrease	Illumina [1530316]	N
931	chr19	45403411	45403412	rs1160985	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	Total cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	19q13.32	APOE	rs1160985-C	0.724	4E-21		7.34	NR z score increase	Affymetrix [659492]	N
931	chr19	45403411	45403412	rs1160985	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	LDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	19q13.32	APOE	rs1160985-C	0.724	2E-27		9.23	NR z score increase	Affymetrix [659492]	N
931	chr19	45403411	45403412	rs1160985	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs1160985-?	NR	7E-9		2.03225	[1.34-2.72] unit decrease	Illumina [32003504] (imputed)	N
931	chr19	45403411	45403412	rs1160985	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs1160985-?	NR	1E-14		2.436275	[1.82-3.06] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45403411	45403412	rs1160985	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	19q13.32	NR	rs1160985-?	NR	8E-18		0.07159728	[0.055-0.088] unit increase	Illumina [30861016] (imputed)	N
931	chr19	45403411	45403412	rs1160985	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs1160985-C	0.564781	4E-16	(females)	1.669499	[1.48-1.86]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45403411	45403412	rs1160985	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs1160985-C	0.564132	1E-22		1.653124	[1.49-1.81]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45403411	45403412	rs1160985	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs1160985-C	0.563262	3E-8	(males)	1.629703	[1.37-1.89]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45403411	45403412	rs1160985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	Intergenic	rs1160985-?		3E-7		2.021683	[NR] unit increase	Illumina [575353]	N
931	chr19	45403411	45403412	rs1160985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	Intergenic	rs1160985-?		8E-7		0.05343805	[NR] unit increase	Illumina [575353]	N
931	chr19	45403411	45403412	rs1160985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	Intergenic	rs1160985-?		2E-6		0.005514577	[NR] unit increase	Illumina [575353]	N
931	chr19	45403411	45403412	rs1160985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	Intergenic	rs1160985-?		3E-6		131.1304	[NR] unit decrease	Illumina [575353]	N
931	chr19	45403411	45403412	rs1160985	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	19q13.32	TOMMC40, APOE	rs1160985-T	NR	6E-7	(GO:0006222|BP|08|UMP biosynthetic process)	4.9816666	Z-score increase	Illumina [8100000] (imputed)	N
931	chr19	45403411	45403412	rs1160985	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	19q13.32	TOMMC40, APOE	rs1160985-T	NR	2E-6	(GO:0004812|MF|05|aminoacyl-tRNA ligase activity)	4.723705	Z-score increase	Illumina [8100000] (imputed)	N
931	chr19	45403411	45403412	rs1160985	26763881	Kurano M	2016-01-14	J Hum Genet	Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.	LDL cholesterol levels	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	19q13.32	APOE, TOMM40	rs1160985-?	NR	3E-6		0.16	[0.095-0.225] unit decrease	Illumina [1294241]	N
931	chr19	45403411	45403412	rs1160985	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	19q13.32	TOMM40	rs1160985-T	0.37	4E-13	(LDL)	0.127	[0.084-0.170] mmol/L decrease	Affymetrix, Illumina [up to 2249917] (imputed)	N
931	chr19	45403411	45403412	rs1160985	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	19q13.32	APOE	rs1160985-C	0.365	2E-21	(AA)	6.772	[NR] unit increase	Affymetrix [NR]	N
931	chr19	45403411	45403412	rs1160985	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	19q13.32	TOMM40	rs1160985-C	0.366	4E-13	(AA women)	0.1343	[NR] unit decrease	Affymetrix [up to 2203609] (imputed)	N
931	chr19	45403857	45403858	rs760136	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs760136-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	5E-14		0.0404	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	4E-20		0.0494	[0.039-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	4E-18		0.0467	[0.036-0.057] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	2E-17		0.0459	[0.035-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	5E-41		0.0722	[0.062-0.083] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs1160984-T	NR	1E-16		0.0445	[0.034-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45403923	45403924	rs1160984	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs1160984-T	0.05762	2E-20		9.292308	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45404057	45404058	rs142412517	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs142412517-T	0.001157	2E-12		7.033927	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	5E-11		0.051	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	7E-22		0.0746	[0.059-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	3E-16		0.0636	[0.048-0.079] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	8E-20		0.0708	[0.056-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	6E-34		0.0944	[0.079-0.11] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs117264457-A	NR	4E-18		0.0675	[0.052-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404431	45404432	rs117264457	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs117264457-G	0.975022	2E-44		0.0914817	[0.079-0.104] unit decrease	NR [NR]	N
931	chr19	45404578	45404579	rs394819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs394819-T	NR	4E-10		0.158	[0.11-0.21] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404578	45404579	rs394819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs394819-T	NR	1E-13		0.1874	[0.14-0.24] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404578	45404579	rs394819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs394819-T	NR	8E-11		0.1649	[0.12-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404578	45404579	rs394819	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs394819-T	NR	7E-22		0.2435	[0.19-0.29] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404578	45404579	rs394819	26339675	Tosto G	2015-06-18	Ann Clin Transl Neurol	F-box/LRR-repeat protein 7 is genetically associated with Alzheimer's disease.	Alzheimer's disease (late onset)	2,451 Caribbean Hispanic cases, 2,063 Caribbean Hispanic controls	550 Caribbean Hispanic cases, 236 Caribbean Hispanic controls	19q13.32	TOMM40, APOE	rs394819-T	0.07	8E-11		1.89	[1.55-2.3]	Affymetrix, Illumina [8837542] (imputed)	N
931	chr19	45404690	45404691	rs405697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs405697-G	NR	4E-70		0.0497	[0.044-0.055] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45404690	45404691	rs405697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs405697-G	NR	5E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404690	45404691	rs405697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs405697-G	NR	1E-107		0.062	[0.057-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45404690	45404691	rs405697	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs405697-?	NR	1E-8	(females)	1.5508373		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45404690	45404691	rs405697	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs405697-?	NR	1E-13		1.5548013		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45404690	45404691	rs405697	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs405697-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45405061	45405062	rs1038026	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs1038026-?	NR	1E-8		2.00883	[1.32-2.7] unit decrease	Illumina [32003504] (imputed)	N
931	chr19	45405061	45405062	rs1038026	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs1038026-?	NR	1E-14		2.444245	[1.82-3.07] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45405061	45405062	rs1038026	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	19q13.32	APOE	rs1038026-A	0.3584	3E-22	(AA)	0.1505	[0.12-0.18] unit decrease	Illumina [~ 200000]	N
931	chr19	45405061	45405062	rs1038026	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1038026-A	NR	7E-8		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45405061	45405062	rs1038026	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1038026-A	0.645	6E-10	(East Asian)	0.106	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45405061	45405062	rs1038026	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1038026-A	0.379	2E-6	(AA)	0.125	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45405061	45405062	rs1038026	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1038026-A	NR	1E-9		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45405061	45405062	rs1038026	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs1038026-A	0.536	3E-6	(EA)	0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45405498	45405499	rs141864196	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	TOMM40	rs141864196-A	0.02628	3E-10		6.313068	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45405498	45405499	rs141864196	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs141864196-?	NR	2E-6				Affymetrix [7795605] (imputed)	N
931	chr19	45405498	45405499	rs141864196	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs141864196-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45406672	45406673	rs10119	34151794	Kang S	2021-06-18	J Alzheimers Dis	Potential Novel Genes for Late-Onset Alzheimer's Disease in East-Asian Descent Identified by APOE-Stratified Genome-Wide Association Study.	Late-onset Alzheimer's disease	1,119 Korean ancestry cases, 1,172 Korean ancestry controls	980 Japanese ancestry cases, 976 Japanese ancestry controls	19q13.32		rs10119-?	NR	2E-57		2.731		NR [35685761] (imputed)	N
931	chr19	45406672	45406673	rs10119	33134509	Tang ME	2020-09-10	Neurol Genet	Matrix metalloproteinase-degraded type I collagen is associated with APOE/TOMM40 variants and preclinical dementia.	Serum type 1 collagen metabolite levels	4,891 Danish ancestry individuals	NA	19q13.32	TOMM40	rs10119-A	0.29	3E-8		0.08464	[0.045-0.124] unit increase	Illumina [7672338] (imputed)	N
931	chr19	45406672	45406673	rs10119	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	TOMM40	rs10119-A	NR	5E-12		0.00826	[0.0059-0.0106] unit decrease	NR [16367095] (imputed)	N
931	chr19	45406672	45406673	rs10119	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	TOMM40	rs10119-A	0.31	4E-10		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45406672	45406673	rs10119	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs10119-?	NR	1E-307		1.44	[1.41, 1.46]	Affymetrix [7795605] (imputed)	N
931	chr19	45406672	45406673	rs10119	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	19q13.32	TOMM40	rs10119-?	NR	6E-9		0.0446	[0.030-0.059] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
931	chr19	45407787	45407788	rs7259620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs7259620-G	0.569609	3E-11		0.0268116	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
931	chr19	45407787	45407788	rs7259620	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs7259620-G	0.568643	6E-16	(females)	1.665856	[1.47-1.86]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45407787	45407788	rs7259620	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs7259620-G	0.568042	2E-23		1.6754	[1.51-1.84]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45407787	45407788	rs7259620	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	TOMM40	rs7259620-G	0.567196	2E-9	(males)	1.700015	[1.43-1.97]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45408563	45408564	rs449647	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs449647-T	0.117	4E-8		0.702	[0.619-0.797]	NR [38043082] (imputed)	N
931	chr19	45408563	45408564	rs449647	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOE	rs449647-A	0.887	9E-22		1.6129031	[1.45-1.79]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45408563	45408564	rs449647	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs449647-?	NR	2E-58				Affymetrix [7795605] (imputed)	N
931	chr19	45408563	45408564	rs449647	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs449647-?	NR	2E-58				Affymetrix [7795605] (imputed)	N
931	chr19	45408627	45408628	rs769446	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	19q13.32	APOE	rs769446-T	0.95	2E-9		1.34	[1.22-1.47]	Illumina [5932413] (imputed)	N
931	chr19	45408627	45408628	rs769446	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs769446-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45408627	45408628	rs769446	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19q13.32	APOE	rs769446-?	NR	6E-187		0.2845	[0.27-0.3] unit decrease novel	Illumina [6108953] (imputed)	N
931	chr19	45408627	45408628	rs769446	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	19q13.32	APOE	rs769446-?	NR	3E-322		0.5141	[0.49-0.54] unit decrease novel	Illumina [6108953] (imputed)	N
931	chr19	45408835	45408836	rs405509	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs405509-T	NR	2E-11		0.0668546	[0.047-0.086] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45408835	45408836	rs405509	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs405509-G	0.478	3E-38		0.683	[0.645-0.724]	NR [38043082] (imputed)	N
931	chr19	45408835	45408836	rs405509	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19q13.32	APOC1	rs405509-?	NR	3E-12		0.007515	[0.0053-0.0097] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45408835	45408836	rs405509	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs405509-?	NR	4E-12	(M_HDL_P)	0.043628477	NR unit decrease	Illumina [609262]	N
931	chr19	45408835	45408836	rs405509	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs405509-T	0.498083	1E-8	(males)	1.640389	[1.38-1.9]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45408835	45408836	rs405509	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs405509-T	0.496776	2E-21		1.613847	[1.46-1.77]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45408835	45408836	rs405509	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs405509-T	0.49585	4E-14	(females)	1.596079	[1.41-1.78]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45408835	45408836	rs405509	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.32		rs405509-T	0.4834	2E-8	(conditional-joint)	0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
931	chr19	45409166	45409167	rs440446	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs440446-C	0.321	7E-25		0.654	[0.604-0.71]	NR [38043082] (imputed)	N
931	chr19	45409166	45409167	rs440446	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOE	rs440446-G	0.686	9E-59		1.6393442	[1.56-1.75]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45409166	45409167	rs440446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs440446-?	NR	3E-12				NR [~ 8900000] (imputed)	N
931	chr19	45409578	45409579	rs769448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs769448-T	NR	3E-12		0.0561	[0.04-0.072] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45409578	45409579	rs769448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs769448-T	NR	5E-14		0.0607	[0.045-0.077] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial 3-hydroxybutyrate	4,348 individuals	NA	19q13.32		rs769449-A	0.131500345	4E-11		0.209437	[0.15-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45410001	45410002	rs769449	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-3 fatty acids	4,734 individuals	NA	19q13.32		rs769449-A	0.131244708	1E-8		0.173287	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45410001	45410002	rs769449	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting 3-hydroxybutyrate	4,734 individuals	NA	19q13.32		rs769449-A	0.131189166	7E-9		0.176858	[0.12-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45410001	45410002	rs769449	33589841	Chia R	2021-02-15	Nat Genet	Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.	Dementia with Lewy bodies	2,591 European ancestry cases, 4,027 European ancestry controls	970 European ancestry cases, 8,928 European ancestry controls	19q13.32		rs769449-A	0.11	3E-101		2.32	[2.05-2.63]	NR [20137051]	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	8E-11		0.0236	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	1E-60		0.0596	[0.053-0.067] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	6E-792		0.2174	[0.21-0.22] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	1E-18		0.032	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	6E-1060		0.2513	[0.24-0.26] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	4E-114		0.086	[0.079-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	5E-10		0.0231	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	5E-10		0.0226	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	1E-22		0.0355	[0.028-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	8E-12		0.027	[0.019-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	6E-18		0.0313	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	5E-23		0.0358	[0.029-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	1E-1128		0.2593	[0.25-0.27] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	9E-73		0.0655	[0.058-0.073] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	3E-1621		0.3103	[0.3-0.32] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	4E-191		0.1119	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-A	NR	9E-39		0.0472	[0.04-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds (lobar)	2,035 European ancestry cases, 27 Chinese ancestry cases, 36 Malay ancestry cases, 81 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	19q13.32	APOE	rs769449-A	0.13	4E-7		1.32	NR	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45410001	45410002	rs769449	32913026	Knol MJ	2020-09-10	Neurology	Association of common genetic variants with brain microbleeds: A Genome-wide Association Study.	Cerebral microbleeds	3,321 European ancestry cases, 42 Chinese ancestry cases, 75 Malay ancestry cases, 118 African American cases, 21,785 European ancestry controls, 88 Chinese ancestry controls, 129 Malay ancestry controls, 304 African American controls	NA	19q13.32	APOE	rs769449-A	0.13	3E-10		1.33	NR	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45410001	45410002	rs769449	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs769449-?	NR	3E-22		0.155	[0.12-0.19] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45410001	45410002	rs769449	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs769449-?	NR	1E-97		7.496	[6.75-8.24] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45410001	45410002	rs769449	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs769449-?	NR	3E-11	(M_HDL_PL)	0.047318336	NR unit decrease	Illumina [609262]	N
931	chr19	45410001	45410002	rs769449	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	19q13.32	NR	rs769449-G		2E-20				Illumina [458865]	N
931	chr19	45410001	45410002	rs769449	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	19q13.32	APOE	rs769449-A	0.12	6E-74		0.05835	[0.052-0.065] unit decrease	Illumina [~ 540852]	N
931	chr19	45410001	45410002	rs769449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs769449-?	NR	6E-8		0.04580732	[0.029-0.062] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45410001	45410002	rs769449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs769449-?	NR	5E-19		6.25767	[4.88-7.63] unit increase	Illumina [32003504] (imputed)	N
931	chr19	45410001	45410002	rs769449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs769449-?	NR	3E-22		6.085762	[4.86-7.31] unit increase	Illumina [31808917] (imputed)	N
931	chr19	45410001	45410002	rs769449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.32	NR	rs769449-?	NR	1E-6		1.10831	[0.66-1.55] unit decrease	Illumina [31978362] (imputed)	N
931	chr19	45410001	45410002	rs769449	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	19q13.32	NR	rs769449-?	NR	3E-52		0.250816	[0.22-0.28] unit decrease	Illumina [30861016] (imputed)	N
931	chr19	45410001	45410002	rs769449	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769449-?	NR	7E-30	(males)	3.921353		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410001	45410002	rs769449	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769449-?	NR	6E-47	(females)	3.7354689		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410001	45410002	rs769449	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769449-?	NR	2E-83		3.8717523		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410001	45410002	rs769449	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE	rs769449-A	0.15	6E-20		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45410001	45410002	rs769449	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOE	rs769449-?		2E-14		3.677384	[NR] unit decrease	Illumina [575353]	N
931	chr19	45410001	45410002	rs769449	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOE	rs769449-?		4E-26		0.1421661	[NR] unit decrease	Illumina [575353]	N
931	chr19	45410001	45410002	rs769449	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOE	rs769449-?		6E-24		0.01467512	[NR] unit decrease	Illumina [575353]	N
931	chr19	45410001	45410002	rs769449	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOE	rs769449-?		1E-18		301.1457	[NR] unit increase	Illumina [575353]	N
931	chr19	45410001	45410002	rs769449	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	19q13.32	APOE	rs769449-A	0.0692	3E-38		0.288	[0.24-0.33] unit decrease	Illumina [~ 200000]	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	NR	8E-29		0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.892	5E-23	(EA)	0.069	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	NR	2E-114		0.162	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.914	7E-12	(Hispanic)	0.182	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.911	3E-9	(East Asian)	0.177	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.892	5E-95	(EA)	0.159	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	NR	3E-157		0.194	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.914	5E-14	(Hispanic)	0.201	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.911	7E-9	(East Asian)	0.174	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.892	5E-136	(EA)	0.195	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	NR	4E-52		0.089	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769449-G	0.892	1E-47	(EA)	0.092	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410001	45410002	rs769449	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	19q13.32	TOMM40, APOE, PVRL2	rs769449-A	NR	3E-12			unit decrease	Illumina [at least 1198956] (imputed)	N
931	chr19	45410001	45410002	rs769449	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOE	rs769449-?		6E-22				Illumina [563980]	N
931	chr19	45410001	45410002	rs769449	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOE	rs769449-?		8E-11				Illumina [563980]	N
931	chr19	45410001	45410002	rs769449	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid AB1-42 levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOE	rs769449-?		2E-30				Illumina [563980]	N
931	chr19	45410001	45410002	rs769449	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40	rs769449-A	0.191	5E-94		0.101	[0.091-0.111] unit decrease	Illumina [7358575] (imputed)	N
931	chr19	45410001	45410002	rs769449	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	19q13.32	APOE, APOC1, TOMM40, PVRL2	rs769449-A	0.191	4E-29		0.078	[0.064-0.092] unit increase	Illumina [7358575] (imputed)	N
931	chr19	45410001	45410002	rs769449	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	19q13.32	APOE, TOMM40, PVRL2, APOC1	rs769449-A	0.191	5E-33		0.079	[0.067-0.091] unit increase	Illumina [7358575] (imputed)	N
931	chr19	45410001	45410002	rs769449	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.32	NR	rs769449-?	NR	2E-9	Apolipoprotein E (isoform E2)			Illumina [514227]	N
931	chr19	45410001	45410002	rs769449	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	19q13.32	NR	rs769449-?	NR	2E-7		0.058581	[0.036-0.081] unit increase	Affymetrix [9658292] (imputed)	N
931	chr19	45410001	45410002	rs769449	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	HDL cholesterol levels	12,685 Chinese ancestry individuals	NA	19q13.32	APOE	rs769449-A	0.081	4E-10		0.14	[0.1-0.18] unit decrease	Illumina [286795]	N
931	chr19	45410001	45410002	rs769449	26421299	Li J	2015-09-03	Biomed Res Int	Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort.	Cingulate cortical amyloid beta load	215 European ancestry early mild cognitive impairment cases, 152 European ancestry late mild cognitive impairment cases, 45 European ancestry Alzheimer disease cases, 190  European ancestry controls	NA	19q13.32	APOE	rs769449-?	NR	5E-17				Illumina [582718]	N
931	chr19	45410001	45410002	rs769449	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	19q13.32	APOE	rs769449-?	0.116	5E-19	(EA)	0.0315	[0.02457-0.03835] unit decrease	Illumina [1530316]	N
931	chr19	45410001	45410002	rs769449	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		19q13.32	APOE, TOMM40	rs769449-A	NR	2E-18	(ptau)	0.091	[NR] unit increase	Illumina [5815690] (imputed)	N
931	chr19	45410001	45410002	rs769449	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		19q13.32	APOE, TOMM40	rs769449-A	NR	2E-16	(tau)	0.082	[NR] unit increase	Illumina [5815690] (imputed)	N
931	chr19	45410001	45410002	rs769449	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	19q13.32	APOE	rs769449-?	NR	9E-21		0.26	[NR] mg/dl decrease	Illumina [336108]	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	2E-60		0.0398	[0.035-0.045] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	2E-85		0.0476	[0.043-0.052] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	6E-18		0.0234	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	4E-76		0.0449	[0.04-0.05] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	2E-18		0.0213	[0.017-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	3E-98		0.0512	[0.046-0.056] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs769450-A	NR	2E-16		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45410443	45410444	rs769450	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769450-G	0.614728	3E-13	(females)	1.604012	[1.41-1.79]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410443	45410444	rs769450	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769450-G	0.61311	6E-19		1.59501	[1.44-1.75]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410443	45410444	rs769450	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs769450-G	0.610827	2E-7	(males)	1.600702	[1.34-1.86]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45410547	45410548	rs115299243	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs115299243-?	NR	1E-14		0.1560534	[0.12-0.2] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45410547	45410548	rs115299243	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs115299243-?	NR	3E-6		7.766305	[4.5-11.03] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45410547	45410548	rs115299243	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs115299243-A	NR	7E-10		0.424	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45410547	45410548	rs115299243	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs115299243-A	0.978	9E-9	(AA)	0.472	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	3E-8		0.278955	[0.18-0.38] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	3E-8		0.279658	[0.18-0.38] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	8E-9		0.291278	[0.19-0.39] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	1E-8		0.289176	[0.19-0.39] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	2E-9		0.298142	[0.2-0.4] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	3E-9		0.298073	[0.2-0.4] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	4E-8		0.270159	[0.17-0.37] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs769452-T	0.998349	2E-8		0.280227	[0.18-0.38] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411109	45411110	rs769452	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	APOE	rs769452-C	0.001629	2E-8		5.5855217	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45411940	45411941	rs429358	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Apo E plasma levels	400 French ancestry individuals	NA	19q13.32		rs429358-T	NR	4E-9		0.233	[0.15-0.31] ug/mL decrease	Illumina [5201092] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs429358-T	0.84517	1E-43		0.07883	[0.068-0.09] unit increase	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	1E-64		0.0946684	[0.084-0.106] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	3E-58		0.09009	[0.079-0.101] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	1E-57		0.0894871	[0.079-0.1] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs429358-T	0.844871	1E-76		0.105943	[0.095-0.117] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	5E-54		0.0883229	[0.077-0.1] unit increase	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs429358-T	0.84517	3E-76		0.104559	[0.093-0.116] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	2E-50		0.0789013	[0.069-0.089] unit increase	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs429358-T	0.845176	2E-45		0.0744857	[0.064-0.085] unit increase	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	19q13.32		rs429358-T	0.845115	2E-23		0.0564519	[0.045-0.068] unit decrease	NR [11722792] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAE	5,363 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	5E-57		0.419172	[0.37-0.47] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNRPF	5,356 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-76		0.453913	[0.41-0.5] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RALA	5,366 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	8E-13		0.188585	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSME1	5,352 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	7E-32		0.301643	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSD	5,348 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	4E-52		0.371641	[0.32-0.42] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2G7	5,366 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-13		0.192497	[0.14-0.24] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDE1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-91		0.51394	[0.46-0.56] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MSN	5,364 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-127		0.600298	[0.55-0.65] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IRF6	5,367 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-186		0.716266	[0.67-0.76] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTF1	5,329 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	3E-159		0.566759	[0.53-0.61] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRP	5,368 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-23		0.268878	[0.22-0.32] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPE	5,339 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	2E-19		0.212236	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKAP2	5,351 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	4E-24		0.254682	[0.21-0.3] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5orf38	5,357 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	1E-61		0.432082	[0.38-0.48] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BIRC2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	3E-111		0.579285	[0.53-0.63] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOB	5,366 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	3E-24		0.271148	[0.22-0.32] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIMP1	5,349 Icelandic ancestry individuals	NA	19q13.32		rs429358-C	0.1528	3E-53		0.372704	[0.33-0.42] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45411940	45411941	rs429358	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q13.32		rs429358-C	0.16	5E-12		6.91	z score increase	Affymetrix [9061022] (imputed)	N
931	chr19	45411940	45411941	rs429358	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	19q13.32	APOE	rs429358-C	NR	1E-8		0.1366	[0.09-0.183] unit decrease	NR [6787908] (imputed)	N
931	chr19	45411940	45411941	rs429358	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Superior frontal cortical thickness	2,643 Korean ancestry individuals	NA	19q13.32		rs429358-C	0.11	1E-8		0.24	[0.16-0.32] unit decrease	NR [3930740] (imputed)	N
931	chr19	45411940	45411941	rs429358	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Hippocampal volume	2,643 Korean ancestry individuals	NA	19q13.32		rs429358-C	0.11	1E-15		0.3	[0.22-0.38] unit decrease	NR [3930740] (imputed)	N
931	chr19	45411940	45411941	rs429358	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Entorhinal cortical thickness	2,643 Korean ancestry individuals	NA	19q13.32		rs429358-C	0.11	1E-9		0.25	[0.17-0.33] unit decrease	NR [3930740] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	7E-21		0.270037	[0.21-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.161841572	6E-12		0.203111	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	4E-11		0.190428	[0.13-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	5E-9		0.169359	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	5E-11		0.189325	[0.13-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162360792	2E-12		0.203331	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	4E-11		0.19086	[0.13-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	2E-21		0.273218	[0.22-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	1E-10		0.185288	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	3E-24		0.292	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-24		0.295134	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-9		0.176055	[0.12-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	2E-23		0.287575	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	6E-23		0.283672	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total fatty acids	4,348 individuals	NA	19q13.32		rs429358-C	0.162371642	4E-13		0.210999	[0.15-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	3E-21		0.272445	[0.22-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	1E-16		0.238085	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-23		0.288119	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	2E-10		0.184361	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	2E-24		0.293495	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	5E-10		0.179913	[0.12-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	6E-24		0.290593	[0.23-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	4E-15		0.226902	[0.17-0.28] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	3E-24		0.291885	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162360792	2E-23		0.287255	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small VLDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	7E-10		0.17839	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small LDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	3E-24		0.29204	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial serum total cholesterol	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	5E-19		0.256825	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial saturated fatty acids	4,348 individuals	NA	19q13.32		rs429358-C	0.162437075	7E-10		0.179498	[0.12-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial polyunsaturated fatty acids	4,348 individuals	NA	19q13.32		rs429358-C	0.162416939	9E-18		0.249076	[0.19-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-19		0.26193	[0.21-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	3E-9		0.171262	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-22		0.281664	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162158672	6E-17		0.241174	[0.18-0.3] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	2E-8		0.161577	[0.11-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-25		0.301564	[0.25-0.36] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	8E-23		0.282984	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162360792	2E-19		0.259683	[0.2-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-6 fatty acids	4,348 individuals	NA	19q13.32		rs429358-C	0.162416939	5E-18		0.250807	[0.19-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial monounsaturated fatty acids (16:1, 18:1)	4,348 individuals	NA	19q13.32		rs429358-C	0.162399016	6E-9		0.16938	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium LDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	2E-24		0.294126	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium HDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-9		0.1758	[0.12-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	19q13.32		rs429358-C	0.162416939	2E-18		0.254613	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large LDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	1E-23		0.288742	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	2E-18		0.25234	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	6E-11		0.188943	[0.13-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	4E-24		0.291267	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	7E-25		0.296131	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-8		0.165019	[0.11-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	2E-19		0.259943	[0.2-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162360792	4E-17		0.242738	[0.19-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	19q13.32		rs429358-C	0.162419911	5E-16		0.23526	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial esterified cholesterol	4,348 individuals	NA	19q13.32		rs429358-C	0.16245049	5E-19		0.258516	[0.2-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	1E-21		0.275209	[0.22-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	4E-19		0.257337	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	3E-23		0.285996	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	3E-13		0.210906	[0.15-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	3E-24		0.292372	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium HDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162323441	2E-10		0.183513	[0.13-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large LDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	3E-25		0.298956	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in chylomicrons and extremely large VLDL	4,348 individuals	NA	19q13.32		rs429358-C	0.165453761	7E-9		0.169466	[0.11-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in IDL	4,348 individuals	NA	19q13.32		rs429358-C	0.162360792	1E-25		0.300889	[0.24-0.36] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein B	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	9E-23		0.28278	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	19q13.32		rs429358-C	0.162286109	3E-23		0.285903	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very small VLDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	3E-19		0.247981	[0.19-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	19q13.32		rs429358-C	0.160012675	9E-13		0.201575	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	4E-14		0.20887	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	1E-11		0.18747	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	1E-12		0.195889	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161479805	1E-12		0.196548	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	4E-13		0.200855	[0.15-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	2E-19		0.248816	[0.19-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	3E-13		0.202751	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	7E-27		0.296182	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	5E-10		0.172049	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	9E-27		0.295396	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	9E-25		0.283473	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	6E-23		0.272217	[0.22-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	19q13.32		rs429358-C	0.161537304	4E-17		0.23343	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	6E-18		0.23843	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	4E-18		0.240037	[0.19-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	5E-26		0.291323	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	1E-12		0.196782	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	2E-26		0.29323	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	5E-25		0.285202	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	7E-17		0.230802	[0.18-0.28] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	1E-25		0.288192	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161479805	2E-24		0.281504	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small VLDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	1E-12		0.196494	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small LDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	5E-27		0.296908	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting serum total cholesterol	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	4E-21		0.260759	[0.21-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting saturated fatty acids	4,734 individuals	NA	19q13.32		rs429358-C	0.161711477	1E-12		0.197394	[0.14-0.25] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting polyunsaturated fatty acids	4,734 individuals	NA	19q13.32		rs429358-C	0.161647532	3E-20		0.255085	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	2E-18		0.241817	[0.19-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	9E-12		0.189076	[0.13-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	4E-26		0.291909	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small HDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161366928	2E-13		0.203946	[0.15-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	8E-11		0.179834	[0.13-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	2E-28		0.305241	[0.25-0.36] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	4E-24		0.279787	[0.23-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161479805	4E-21		0.260746	[0.21-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-6 fatty acids	4,734 individuals	NA	19q13.32		rs429358-C	0.16165072	1E-20		0.257377	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting monounsaturated fatty acids (16:1, 18:1)	4,734 individuals	NA	19q13.32		rs429358-C	0.161676923	5E-13		0.201189	[0.15-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium VLDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	9E-10		0.169589	[0.12-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium LDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	9E-27		0.295573	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	19q13.32		rs429358-C	0.161647532	3E-22		0.268282	[0.21-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	6E-25		0.284538	[0.23-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	2E-17		0.235239	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	3E-14		0.20992	[0.16-0.26] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	9E-27		0.295596	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	4E-10		0.173567	[0.12-0.23] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	4E-27		0.297518	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	1E-21		0.264058	[0.21-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161479805	5E-20		0.253317	[0.2-0.31] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol	4,734 individuals	NA	19q13.32		rs429358-C	0.161722328	9E-18		0.237671	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	19q13.32		rs429358-C	0.161711832	2E-22		0.26976	[0.22-0.32] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161800085	2E-17		0.234638	[0.18-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161548128	7E-19		0.245388	[0.19-0.3] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161585113	1E-25		0.289353	[0.24-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium VLDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161657082	9E-15		0.21437	[0.16-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161622913	4E-26		0.291486	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large LDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	3E-26		0.29202	[0.24-0.35] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	19q13.32		rs429358-C	0.161479805	8E-26		0.290188	[0.24-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	6E-26		0.290338	[0.24-0.34] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	19q13.32		rs429358-C	0.161731728	3E-23		0.273934	[0.22-0.33] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19q13.32		rs429358-C	NR	6E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.32		rs429358-C	NR	5E-28		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	19q13.32		rs429358-C	0.102979	3E-30		0.0899756	[0.075-0.105] unit decrease	Illumina [13465896] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.32		rs429358-C	NR	2E-155		0.0773	[0.072-0.083] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	83,025 East Asian ancestry individuals	NA	19q13.32		rs429358-C	0.10215	2E-53		0.120771	[0.11-0.14] unit decrease	Illumina [13470202] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.32		rs429358-C	NR	1E-1420		0.2447	[0.24-0.25] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	19q13.32		rs429358-C	NR	1E-16		0.0937	[0.072-0.116] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
931	chr19	45411940	45411941	rs429358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	19q13.32		rs429358-C	NR	4E-40		0.0359	[0.031-0.041] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
931	chr19	45411940	45411941	rs429358	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	19q13.32	NR	rs429358-C	0.1526	5E-10				NR [9056863] (imputed)	N
931	chr19	45411940	45411941	rs429358	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	19q13.32		rs429358-C	0.156	3E-13		0.82	[0.77-0.87]	Affymetrix [9723654] (imputed)	N
931	chr19	45411940	45411941	rs429358	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	19q13.32		rs429358-?	NR	1E-300				Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	34336000	Li L	2021-07-14	Behav Neurol	Use of Deep-Learning Genomics to Discriminate Healthy Individuals from Those with Alzheimer's Disease or Mild Cognitive Impairment.	Alzheimer's disease	622 cases, 366 controls	NA	19q13.32		rs429358-?	NR	5E-36		4.348		Illumina [NR]	N
931	chr19	45411940	45411941	rs429358	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	19q13.32	APOE	rs429358-?	NR	1E-30		0.123	NR % decrease	Affymetrix [9390170] (imputed)	N
931	chr19	45411940	45411941	rs429358	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs429358-C	0.216	2E-215		3.655	[3.37-3.964]	NR [38043082] (imputed)	N
931	chr19	45411940	45411941	rs429358	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs429358-C	0.226	5E-122		3.245	[2.941-3.579]	NR [38043082] (imputed)	N
931	chr19	45411940	45411941	rs429358	34119372	Lord J	2021-05-04	Neurobiol Aging	A genome-wide association study of plasma phosphorylated tau181.	Plasma p-tau181 levels	1,153 European ancestry individuals	NA	19q13.32		rs429358-?	NR	3E-25		0.281	[0.23-0.33] unit increase	Illumina [5688385] (imputed)	N
931	chr19	45411940	45411941	rs429358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.32	APOE	rs429358-C	NR	2E-11		0.0262381	[0.019-0.034] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45411940	45411941	rs429358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.32	APOE	rs429358-C	NR	4E-11		0.0257463	[0.018-0.033] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45411940	45411941	rs429358	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 carrier Alzheimer's disease	534 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.39	9E-16		0.32	[0.40-0.25] unit increase	Illumina [1679420] (imputed)	N
931	chr19	45411940	45411941	rs429358	34002480	Damotte V	2021-05-18	Alzheimers Dement	Plasma amyloid ? levels are driven by genetic variants near APOE, BACE1, APP, PSEN2: A genome-wide association study in over 12,000 non-demented participants.	Plasma amyloid beta peptide concentrations (ABx-42)	12,369 European ancestry non-demented individuals	NA	19q13.32	APOE	rs429358-C	0.134	9E-13		0.167	unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	34002480	Damotte V	2021-05-18	Alzheimers Dement	Plasma amyloid ? levels are driven by genetic variants near APOE, BACE1, APP, PSEN2: A genome-wide association study in over 12,000 non-demented participants.	Plasma amyloid beta peptide concentration (ABx-40/ABx-42 ratio)	12,369 European ancestry non-demented individuals	NA	19q13.32	APOE	rs429358-C	0.134	6E-20		0.212	unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.32	APOE	rs429358-T	0.845457	8E-40		0.00415406	[0.0035-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
931	chr19	45411940	45411941	rs429358	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	19q13.32	APOE	rs429358-T	0.845488	1E-56		0.0085211	[0.0075-0.0096] unit increase	Affymetrix [13995440] (imputed)	N
931	chr19	45411940	45411941	rs429358	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	19q13.32	APOE	rs429358-C	0.138	3E-28	(EA)	11.02543	[NR] unit decrease	Illumina [9039731] (imputed)	N
931	chr19	45411940	45411941	rs429358	33637690	He L	2021-02-26	Transl Psychiatry	Exome-wide age-of-onset analysis reveals exonic variants in ERN1 and SPPL2C associated with Alzheimer's disease.	Alzheimer's disease (age of onset)	10,216 European ancestry individuals	9,261 European ancestry individuals	19q13.32		rs429358-?	NR	4E-497		3.32		NR [110450]	N
931	chr19	45411940	45411941	rs429358	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs429358-?	NR	1E-300		1.17924	unit increase	NR [10687077] (imputed)	N
931	chr19	45411940	45411941	rs429358	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	19q13.32	NR	rs429358-T	0.85	1E-20		1.06	[1.05, 1.07]	Affymetrix [39302896] (imputed)	N
931	chr19	45411940	45411941	rs429358	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	19q13.32	APOE	rs429358-T	0.84	5E-35		12.4	z-score increase	Affymetrix [4312306] (imputed)	N
931	chr19	45411940	45411941	rs429358	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19q13.32	APOE	rs429358-C	0.139064	4E-22		1.11	[1.09-1.14]	NR [8126035] (imputed)	N
931	chr19	45411940	45411941	rs429358	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOE	rs429358-?		2E-58		0.1026	[0.09-0.115] unit decrease	Illumina [31500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOE	rs429358-?		2E-140		0.1672	[0.15-0.18] unit decrease	Illumina [31500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	19q13.32	APOE	rs429358-C	0.8556	5E-6		0.0399	[0.023-0.057] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.8556	3E-6		0.0401	[0.023-0.057] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.8556	1E-7		0.0447	[0.028-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.8556	2E-7		0.0445	[0.028-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	19q13.32		rs429358-C	0.2968	5E-24		7.027	[4.8138000000000005-10.2578]	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	19q13.32		rs429358-T	0.7032	6E-32		0.105	[0.087-0.123] unit increase	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 levels	677 European ancestry individuals	578 European ancestry individuals	19q13.32		rs429358-T	0.7032	5E-17		0.11	[0.085-0.135] unit increase	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Amyloid status (abnormal vs normal)	455 European ancestry cases, 416 European ancestry controls	361 European ancestry cases, 257 European ancestry controls	19q13.32		rs429358-C	0.2968	2E-25		5.664	[4.0909-7.842]	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Amyloid pathology	890 European ancestry individuals	578 European ancestry individuals	19q13.32		rs429358-T	0.7032	4E-33		0.573	[0.48-0.67] z score increase	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Alzheimer's disease	212 European ancestry cases, 333 European ancestry controls	46 European ancestry cases, 257 European ancestry controls	19q13.32		rs429358-C	0.2968	3E-7		2.256	[1.6552-3.0749]	Illumina [7778465] (imputed)	N
931	chr19	45411940	45411941	rs429358	33134509	Tang ME	2020-09-10	Neurol Genet	Matrix metalloproteinase-degraded type I collagen is associated with APOE/TOMM40 variants and preclinical dementia.	Serum type 1 collagen metabolite levels	4,891 Danish ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.16	1E-17		0.1619	[0.12-0.2] unit decrease	Illumina [7672338] (imputed)	N
931	chr19	45411940	45411941	rs429358	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	19q13.32	APOE	rs429358-C	0.14	1E-8		0.35	[0.23-0.47] unit increase	Illumina [5918868] (imputed)	N
931	chr19	45411940	45411941	rs429358	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	19q13.32	APOE	rs429358-C	0.14	3E-13		0.38	[0.28-0.48] unit decrease	Illumina [5918868] (imputed)	N
931	chr19	45411940	45411941	rs429358	33095540	Sherman BT	2020-10-20	AIDS	Genome-wide association study of high-sensitivity C-reactive protein, D-dimer and Interleukin-6 levels in multi-ethnic HIV+ cohorts.	High-sensitivity C-reactive protein levels in HIV infection	4,675 European ancestry individuals, 1,732 African ancestry individuals, 645 Admixed American individuals	NA	19q13.32	APOE	rs429358-C	0.154	2E-22		0.282	[0.23-0.34] unit decrease	Affymetrix [up to 12642786] (imputed)	N
931	chr19	45411940	45411941	rs429358	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	19q13.32	APOE	rs429358-C	0.1401	1E-15		1.17	1.12-1.21	Affymetrix [18689289] (imputed)	N
931	chr19	45411940	45411941	rs429358	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum C-reactive protein concentration	10,798 European ancestry women	NA	19q13.32	APOE	rs429358-?		8E-10		0.76	[NR]	Affymetrix, Illumina [21784812] (imputed)	N
931	chr19	45411940	45411941	rs429358	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Information processing speed (symbol digit substitution)	87,741 British ancestry individuals	NA	19q13.32		rs429358-?	NR	2E-18				NR [7857346] (imputed)	N
931	chr19	45411940	45411941	rs429358	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	19q13.32		rs429358-?	NR	2E-13				NR [7857346] (imputed)	N
931	chr19	45411940	45411941	rs429358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.32	APOE	rs429358-C	0.154472	2E-59		0.050305303	[0.044-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45411940	45411941	rs429358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.32	APOE	rs429358-C	0.154526	6E-31		0.03638729	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45411940	45411941	rs429358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.32	APOE	rs429358-C	0.154533	4E-21		0.029496036	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45411940	45411941	rs429358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.32	APOE	rs429358-C	0.154528	2E-46		0.044340204	[0.038-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45411940	45411941	rs429358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.32	APOE	rs429358-C	0.154459	4E-21		0.029556824	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45411940	45411941	rs429358	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.8533	1E-126				NR [7320282]	N
931	chr19	45411940	45411941	rs429358	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19q13.32	NR	rs429358-C	0.1454	4E-28		0.073	[0.06-0.086] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
931	chr19	45411940	45411941	rs429358	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q13.32	NR	rs429358-C	0.1469	2E-26		0.0585	[0.048-0.069] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
931	chr19	45411940	45411941	rs429358	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative sugar intake	175,253 European ancestry individuals	59,454 European ancestry individuals	19q13.32	APOE	rs429358-?		3E-11		0.028	[0.02-0.036] unit decrease	Affymetrix [NR]	N
931	chr19	45411940	45411941	rs429358	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.32	APOE	rs429358-T	0.845733	3E-17		0.0160691	[0.012-0.02] unit increase	Affymetrix [12370749]	N
931	chr19	45411940	45411941	rs429358	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	19q13.32	APOE	rs429358-T		1E-9		6.061	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	19q13.32	NR	rs429358-C		4E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
931	chr19	45411940	45411941	rs429358	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fat content (MRI proton density fat fraction measure)	14,440 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.848199	6E-11		0.073	[0.051-0.095] unit increase	Affymetrix [~ 12000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.32		rs429358-?	NR	1E-15		0.0232636	[0.018-0.029] unit decrease	NR [6912294] (imputed)	N
931	chr19	45411940	45411941	rs429358	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs429358-?		3E-17				Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.845675	7E-180		0.0754686	[0.07-0.081] unit increase	Affymetrix [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.845522	8E-311		0.102369	[0.097-0.108] unit increase	Affymetrix [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs429358-?	NR	5E-13		0.0242948	[0.018-0.031] unit increase	Affymetrix [25921788] (imputed)	N
931	chr19	45411940	45411941	rs429358	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs429358-?	NR	1E-8	(female)	0.0261231	[0.017-0.035] unit increase	Affymetrix [25921788] (imputed)	N
931	chr19	45411940	45411941	rs429358	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	19q13.32	PVRL2, TOMM40, APOE, APOC1	rs429358-?	NR	5E-12		0.0232225	[0.017-0.03] unit increase	Affymetrix [25921788] (imputed)	N
931	chr19	45411940	45411941	rs429358	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs429358-T	0.8442	2E-1953		0.26396	[0.26-0.27] unit increase	NR [NR]	N
931	chr19	45411940	45411941	rs429358	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19q13.32	APOC1	rs429358-?	NR	4E-37		0.0204	[0.017-0.024] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45411940	45411941	rs429358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.32	NR	rs429358-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma or type 2 diabetes	33,418 European ancestry asthma cases, 393,186 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	19q13.32	NR	rs429358-?	NR	2E-10				Affymetrix [up to 8270000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	19q13.32	APOE	rs429358-C	0.263094	5E-23		1.257302	[1.01-1.51] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	19q13.32	APOE	rs429358-C	0.260771	3E-31		1.500561	[1.25-1.75] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	19q13.32	APOE	rs429358-C	0.258405	5E-20		1.113172	[0.88-1.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men	NA	19q13.32	APOE	rs429358-C	0.258035	9E-25		1.232879	[1-1.47] unit increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	19q13.32	APOE	rs429358-T		4E-57				Illumina [458525]	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease and/or vascular dementia (clinical subgroup VaD+)	1,168 Spanish ancestry cases, 3,289 Spanish ancestry controls	NA	19q13.32	APOE	rs429358-C	0.17	6E-14		1.69	[1.93-1.47]	Affymetrix [~ 7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease (clinical subgroup AD+++)	1,854 Spanish ancestry cases, 3,289 Spanish ancestry controls	NA	19q13.32	APOE	rs429358-C	0.17	1E-75		2.92	[3.27-2.6]	Affymetrix [~ 7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease (clinical subgroup AD++)	2,611 Spanish ancestry cases, 3,289 Spanish ancestry controls	NA	19q13.32	APOE	rs429358-C	0.17	1E-76		2.71	[3.01-2.44]	Affymetrix [~ 7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease (clinical subgroup AD+)	3,797 Spanish ancestry cases, 3,289 Spanish ancestry controls	NA	19q13.32	APOE	rs429358-C	0.17	1E-64		2.39	[2.64-2.17]	Affymetrix [~ 7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	19q13.32	APOE	rs429358-?	NR	2E-303		3.21	[3.02 - 3.41]	Affymetrix [up to 7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 European ancestry cases, 3,289 European ancestry controls	NA	19q13.32	APOE	rs429358-C	0.17	1E-62		2.27	[2.5-2.06]	Affymetrix [7700000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 25,483 European ancestry controls	1,911 European ancestry cases, 4,987 European ancestry controls	19q13.32	APOE	rs429358-T	0.87	4E-34		1.92	[1.72-2.13]	Illumina [up to 9449311] (imputed)	N
931	chr19	45411940	45411941	rs429358	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	19q13.32	APOE	rs429358-T	0.87	1E-36		1.8181818	[1.64-2]	Illumina [up to 9449311] (imputed)	N
931	chr19	45411940	45411941	rs429358	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 25,483 European ancestry controls	2,557 European ancestry cases, 4,987 European ancestry controls	19q13.32	APOE	rs429358-T	0.87	1E-56		1.67	[1.56-1.79]	Affymetrix, Illumina [up to 10786384] (imputed)	N
931	chr19	45411940	45411941	rs429358	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	19q13.32	APOE	rs429358-T	0.87	1E-61		1.6666665	[1.52-1.82]	Affymetrix, Illumina [up to 10786384] (imputed)	N
931	chr19	45411940	45411941	rs429358	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	APOE	rs429358-C	0.15	5E-19		0.013306	[0.01-0.016] unit decrease	NR [16367095] (imputed)	N
931	chr19	45411940	45411941	rs429358	31065058	Rongve A	2019-05-07	Sci Rep	GBA and APOE ?4 associate with sporadic dementia with Lewy bodies in European genome wide association study.	Dementia with Lewy bodies	720 European ancestry cases, 6,490 European ancestry controls	108 European ancestry cases, 75,545 European ancestry controls	19q13.32	APOE	rs429358-?	NR	6E-17		2.28	[NR]	Illumina [6963063] (imputed)	N
931	chr19	45411940	45411941	rs429358	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	19q13.32	TOMM40, PVRL2, APOE, APOC1, BCAM	rs429358-?	0.210	2E-30		5.24	[5.19-5.29]	NR [~ 2000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension	1,262 European ancestry cases,  9,608 European ancestry controls	NA	19q13.32	APOE, PVRL2, TOMM40, APOC1, BCAM	rs429358-?	0.147	6E-43		3.26	[3.21-3.31]	NR [~ 2000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOE	rs429358-C	0.248	5E-286		3.93	[3.65-4.23]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45411940	45411941	rs429358	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset at age over 80)	2,399 European ancestry cases, 4,160 European ancestry controls	NA	19q13.32	APOE	rs429358-C	0.126	4E-43		2.39	[2.11-2.70]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45411940	45411941	rs429358	30957308	Blauwendraat C	2019-04-07	Mov Disord	Parkinson's disease age at onset genome-wide association study: Defining heritability, genetic loci, and ?-synuclein mechanisms.	Parkinson's disease (age of onset)	17,996 cases	10,572 cases	19q13.32	APOE	rs429358-?	NR	6E-8		0.707	[0.45-0.96] unit decrease	Illumina [6850647] (imputed)	N
931	chr19	45411940	45411941	rs429358	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.1	7E-6		0.29	unit decrease	Illumina [5600000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	19q13.32	NR	rs429358-T	0.8458	2E-8		1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	19q13.32	APOE	rs429358-T	0.85	3E-83		1.0561	[0.95-1.16] years increase	NR [up to 9000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs429358-?	NR	3E-31	(males)	3.8628085		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45411940	45411941	rs429358	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs429358-?	NR	2E-91		3.9972339		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45411940	45411941	rs429358	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs429358-?	NR	1E-53	(females)	3.921738		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45411940	45411941	rs429358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.32		rs429358-?	NR	4E-18				NR [~ 8900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	19q13.32	APOE, APOC1	rs429358-T	0.85	4E-328		0.247	[0.24-0.26] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
931	chr19	45411940	45411941	rs429358	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.85	6E-363	(BMI-adjusted)	0.24	[0.23-0.25] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
931	chr19	45411940	45411941	rs429358	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE	rs429358-C	0.21	9E-30		0.18	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.32	TOMM40, APOE	rs429358-T	0.8458	3E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.32	APOE	rs429358-T	0.8416	1E-142		0.093	[0.086-0.1] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19q13.32	NA	rs429358-T	0.8459	4E-37		0.0346	[0.029-0.04] unit increase	NR [~ 27400000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	19q13.32	NR	rs429358-T	0.8459	4E-37		0.0346	[0.029-0.04] unit increase	NR [~ 27400000] (imputed)	N
931	chr19	45411940	45411941	rs429358	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Hyperopia	361 European ancestry cases, 1,700 European ancestry controls	172 European ancestry cases, 690 European ancestry controls	19q13.32	NR	rs429358-C	NR	1E-7		1.77	NR	Illumina [6470615] (imputed)	N
931	chr19	45411940	45411941	rs429358	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	19q13.32	APOE	rs429358-C		5E-7				Affymetrix [11800000] (imputed)	N
931	chr19	45411940	45411941	rs429358	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.85	6E-13		0.022	unit decrease	Affymetrix [11800000] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	8E-26	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.7799.3.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	8E-12	(Epididymis-specific alpha-mannosidase, MAN2B2.9251.28.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	7E-30	(Adhesion G-protein coupled receptor F1, ADGRF1.11243.90.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	7E-21	(Deoxycytidine kinase, DCK.9836.20.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	6E-35	(Selenoprotein S, VIMP.11286.78.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	5E-646	(Tubulin-specific chaperone A, TBCA.12501.10.3)	1.34	[1.3-1.38] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	4E-159	(Protein CEI, C5orf38.6378.2.3)	0.82	[0.76-0.88] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	4E-148	(Cardiotrophin-1, CTF1.13732.79.3)	0.8	[0.74-0.86] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	3E-418	(Leucine-rich repeat neuronal protein 1, LRRN1.11293.14.3)	1.18	[1.12-1.24] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	3E-34	(Estrogen sulfotransferase, SULT1E1.9878.3.3)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	3E-26	(PDZK1-interacting protein 1, PDZK1IP1.8260.13.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	2E-96	(PH and SEC7 domain-containing protein 1, PSD.13055.53.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	1E-25	(Beta-soluble NSF attachment protein, NAPB.12655.30.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	1E-24	(Nuclear receptor-binding protein, NRBP1.12616.45.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	1E-20	(Epididymal-specific lipocalin-10, LCN10.13007.66.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	1E-19	(ADP-ribosylation factor-like protein 1, ARL1.12392.30.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.153	1E-14	(Stromal interaction molecule 1, STIM1.9271.101.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45411940	45411941	rs429358	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	19q13.32	APOE4	rs429358-?		1E-10	(uncorrected for APOE4 status)			Illumina [5137218] (imputed)	N
931	chr19	45411940	45411941	rs429358	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Cortical amyloid beta load	936 European ancestry individuals	NA	19q13.32	APOE4	rs429358-?		3E-50	(uncorrected for APOE4 status)			Illumina [5137218] (imputed)	N
931	chr19	45411940	45411941	rs429358	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	19q13.32	APOE	rs429358-?		4E-33	(uncorrected for APOE4 status and baseline cortical amyloid)			Illumina [5137218] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	NR	1E-39		0.077	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.905	1E-6	(East Asian)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.868	9E-34	(EA)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	NR	1E-145		0.167	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.905	3E-8	(East Asian)	0.162	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.885	3E-14	(Hispanic)	0.18	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.868	1E-123	(EA)	0.168	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	NR	3E-187		0.193	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.905	2E-7	(East Asian)	0.152	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.885	5E-15	(Hispanic)	0.186	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.868	2E-164	(EA)	0.199	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.789	2E-6	(AA)	0.151	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	NR	3E-50		0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs429358-T	0.868	6E-47	(EA)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45411940	45411941	rs429358	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neurofibrillary tangles or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's diseases cases, 463 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	6E-35				NR [6500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	3E-47				NR [6500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	5E-40				NR [6500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19q13.32	NR	rs429358-?	NR	2E-57		0.1052	[0.092-0.118] unit increase novel	Illumina [6108953] (imputed)	N
931	chr19	45411940	45411941	rs429358	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	19q13.32	NR	rs429358-?	NR	4E-71		0.1558	[0.14-0.17] unit increase novel	Illumina [6108953] (imputed)	N
931	chr19	45411940	45411941	rs429358	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	19q13.32	APOE	rs429358-?	NR	2E-24		0.08948	[0.072-0.107] unit decrease novel	Illumina [6108953] (imputed)	N
931	chr19	45411940	45411941	rs429358	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	19q13.32	APOE	rs429358-?	NR	7E-36		0.1086	[0.092-0.126] unit decrease novel	Illumina [6108953] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	2E-13		0.36	[0.26-0.46] unit decrease	Illumina [8066948] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	2E-18		0.42	[0.32-0.52] unit decrease	Illumina [8066948] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC2, CLPTM1, RELB	rs429358-C	0.25	2E-19		0.47	[0.37-0.57] unit decrease	Illumina [8056701] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in mild cognitive impairment	581 European ancestry cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	1E-13		0.57	[0.41-0.73] unit increase	Illumina [8449920] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	1E-20		0.55	[0.43-0.67] unit increase	Illumina [8454470] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC2, CLPTM1, RELB	rs429358-C	0.25	2E-11		0.53	[0.37-0.69] unit increase	Illumina [8446615] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid p-tau levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, OMM40, APOC1, APOC1P1, APOC4, APOC2, CLPTM1, RELB	rs429358-C	0.25	3E-18		0.51	[0.39-0.63] unit increase	Illumina [8454806] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	1E-51		0.8	[0.7-0.9] unit decrease	Illumina [8454933] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	19q13.32	APOE, BCAM, PVRLTOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	9E-11		0.84	[0.59-1.09] unit decrease	Illumina [8257341] (imputed)	N
931	chr19	45411940	45411941	rs429358	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in mild cognitive impairment	581 European ancestry MCI dementia cases	NA	19q13.32	APOE, BCAM, PVRL2, TOMM40, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs429358-C	0.25	6E-27		0.77	[0.63-0.91] unit decrease	Illumina [8448490] (imputed)	N
931	chr19	45411940	45411941	rs429358	29263008	Guerreiro R	2018-01-01	Lancet Neurol	Investigating the genetic architecture of dementia with Lewy bodies: a two-stage genome-wide association study.	Dementia with Lewy bodies	1,216 European ancestry cases, 3,791 European ancestry controls	527 European ancestry cases, 663 European ancestry controls	19q13.32	APOE	rs429358-C	0.14	3E-64		2.46	[2.22-2.74]	Illumina [8397716] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's attained age)	412,937 British ancestry individuals	NA	19q13.32	APOE, APOC1	rs429358-T	NR	1E-68				Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (mother's age at death)	246,941 British ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.842	7E-19		0.0336	[0.026-0.041] unit increase	Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	19q13.32	APOE, APOC1	rs429358-T	NR	2E-28				Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's age at death)	317,652 British ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.842	9E-13		0.0262	[0.019-0.033] unit increase	Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	19q13.32	APOE, APOC1	rs429358-T	0.845	1E-74		0.0566	[0.051-0.063] unit decrease	Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental age at death)	208,118 British ancestry individuals	NA	19q13.32	APOE, APOC1	rs429358-T	0.842077	5E-22		0.0436	[0.035-0.052] unit increase	Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (both parents in top 10%)	7,182 cases, 79,767 controls	NA	19q13.32	APOE	rs429358-T	0.842	7E-46		0.0388	[0.034-0.044] unit increase	Affymetrix [11535925] (imputed)	N
931	chr19	45411940	45411941	rs429358	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.142	1E-27	(EA)	0.9	years decrease	Affymetrix, Illumina [at least 13643373] (imputed)	N
931	chr19	45411940	45411941	rs429358	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	19q13.32	NR	rs429358-T	0.85	3E-33	(EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	19q13.32	NR	rs429358-T	0.85	4E-20	(EA)	0.27	[0.21-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	19q13.32		rs429358-T	0.86	3E-24	(EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	19q13.32		rs429358-T	0.86	1E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	19q13.32		rs429358-T	0.86	5E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.32	NR	rs429358-?	NR	2E-12	(EA, Apolipoprotein E)			Affymetrix [509946]	N
931	chr19	45411940	45411941	rs429358	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	19q13.32	APOE, TOMM40	rs429358-?		2E-14		0.01	unit decrease	Illumina [13900000] (imputed)	N
931	chr19	45411940	45411941	rs429358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.1416	8E-26		0.05202347	[0.042-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.1415	3E-9		0.0301972	[0.02-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45411940	45411941	rs429358	27029810	Joshi PK	2016-03-31	Nat Commun	Variants near CHRNA3/5 and APOE have age- and sex-related effects on human lifespan.	Mortality	138,536 British ancestry mothers, 133,545 British ancestry fathers	24,168 European ancestry individuals, 681 African ancestry individuals, 962 Afro-Caribbean individuals, 1,613 South Asian ancestry individuals, 338 Chinese ancestry individuals	19q13.32	APOE	rs429358-C	NR	1E-20		1.107		Affymetrix [73355667] (imputed)	N
931	chr19	45411940	45411941	rs429358	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19q13.32	APOE	rs429358-?	NR	2E-42	(EA)	1.4285715		Illumina [12023830] (imputed)	N
931	chr19	45411940	45411941	rs429358	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition positivity (PET imaging)	up to 350 European and other ancestry positive individuals, up to 296 European and other ancestry negative individuals	NA	19q13.32	APOE, APOC1, APOC1P1, PVRL2, TOMM40	rs429358-C	0.85	5E-20		4.72	[4.39-5.05]	Illumina [~ 9000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition (PET imaging)	up to 883 European and other ancestry individuals	NA	19q13.32	PVRL2, APOE, APOC1, APOC1P1, TOMM40	rs429358-T	0.02	8E-32		0.13	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
931	chr19	45411940	45411941	rs429358	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	19q13.32	APOE	rs429358-T	0.84	1E-14		0.066	[0.048-0.084] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr19	45411940	45411941	rs429358	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	19q13.32	APOE, LOC100129500	rs429358-C	0.7347	5E-12	(Ordinal II)	0.508	[0.36-0.65] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	19q13.32	APOE, LOC100129500	rs429358-C	0.7344	3E-11	(Case/control)	0.4905	[0.35-0.63] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	19q13.32	APOE, LOC100129500	rs429358-C	0.732	1E-12	(Ordinal I)	0.4997	[0.36-0.64] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45411940	45411941	rs429358	25027320	Ramirez A	2014-07-15	Hum Mol Genet	SUCLG2 identified as both a determinator of CSF A?1-42 levels and an attenuator of cognitive decline in Alzheimer's disease.	Cerebrospinal AB1-42 levels in Alzheimer's disease dementia	363 European ancestry individuals	515 individuals	19q13.32	APOE	rs429358-?	0.442	4E-17		0.4	[0.30-0.50] unit decrease	Illumina [6812394] (imputed)	N
931	chr19	45411940	45411941	rs429358	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	19q13.32	APOE	rs429358-C	0.28	5E-14	(Cortical Ab)			Illumina [6108668] (imputed)	N
931	chr19	45411940	45411941	rs429358	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	1E-6	(AB1-42, p-tau181p, p-tau181p/AB1-42, t-tau/AB1-42)			Illumina [322557]	N
931	chr19	45411940	45411941	rs429358	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	1E-9	(grey matter density of the right hippocampus)			Illumina [530992]	N
931	chr19	45411940	45411941	rs429358	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	19q13.32	APOE	rs429358-?	NR	1E-7	(multiple phenotypes)			Illumina [530992]	N
931	chr19	45412039	45412040	rs769455	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs769455-?	NR	1E-14		0.308	[0.23-0.39] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45412039	45412040	rs769455	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs769455-?	NR	9E-15		0.1560107	[0.12-0.2] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45412039	45412040	rs769455	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs769455-?	NR	5E-6		7.631463	[4.37-10.89] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45412039	45412040	rs769455	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769455-C	NR	2E-9		0.387	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412039	45412040	rs769455	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs769455-C	0.973	1E-9	(AA)	0.461	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412039	45412040	rs769455	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19q13.32	APOE	rs769455-?	0.0193	2E-18	(AA)	0.21	unit increase	Illumina [247644]	N
931	chr19	45412039	45412040	rs769455	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	LDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	19q13.32	APOE	rs769455-?	0.0193	4E-12	(AA)	12.0	mg/dl decrease	Illumina [247644]	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	5E-324		0.290547	[0.28-0.31] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.32		rs7412-C	0.919348	3E-565		0.361535	[0.35-0.38] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	5E-324		0.287124	[0.27-0.3] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	3E-382		0.317851	[0.3-0.33] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-399		0.323639	[0.31-0.34] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	2E-678		0.425579	[0.41-0.44] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	8E-448		0.341901	[0.33-0.36] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	3E-609		0.382158	[0.37-0.4] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	8E-578		0.372695	[0.36-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	9E-616		0.383131	[0.37-0.4] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	8E-401		0.303792	[0.29-0.32] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-419		0.333017	[0.32-0.35] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	3E-372		0.313576	[0.3-0.33] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-571		0.390118	[0.38-0.41] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs7412-C	0.919797	5E-324		0.284491	[0.27-0.3] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs7412-C	0.919396	5E-392		0.320725	[0.31-0.34] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	4E-490		0.355022	[0.34-0.37] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	8E-394		0.322572	[0.31-0.34] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-377		0.308926	[0.29-0.32] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	2E-622		0.379971	[0.37-0.39] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-113		0.17155	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-544		0.366242	[0.35-0.38] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	4E-604		0.400522	[0.39-0.42] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs7412-C	0.919396	8E-384		0.30337	[0.29-0.32] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	1E-642		0.40538	[0.39-0.42] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	3E-453		0.335734	[0.32-0.35] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs7412-C	0.919344	6E-187		0.216374	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VIMP	5,356 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	3E-68		0.639109	[0.57-0.71] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TBCA	5,361 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	9E-39		0.494055	[0.42-0.57] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUMF1	5,364 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	8E-17		0.326252	[0.25-0.4] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSME1	5,352 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	3E-78		0.692453	[0.62-0.76] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK8	5,366 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	4E-13		0.286049	[0.21-0.36] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1B	5,366 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-22		0.383434	[0.31-0.46] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KMT2C	5,365 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	2E-26		0.407121	[0.33-0.48] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLRC3	5,347 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	3E-29		0.40658	[0.34-0.48] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIN	5,358 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	5E-55		0.578693	[0.51-0.65] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFI16	5,366 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-32		0.465813	[0.39-0.54] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,358 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	6E-12		0.266425	[0.19-0.34] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CUZD1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-132		0.913865	[0.84-0.99] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTF1	5,329 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	2E-43		0.444629	[0.38-0.51] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRYZL1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-82		0.72664	[0.65-0.8] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKAP2	5,351 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	2E-36		0.463481	[0.39-0.54] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CEP57	5,355 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	5E-143		0.912858	[0.84-0.98] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD200R1L	5,365 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	8E-19		0.341908	[0.27-0.42] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C5orf38	5,357 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	2E-171		1.02618	[0.95-1.1] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,366 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-91		0.775029	[0.7-0.85] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,356 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	2E-68		0.649203	[0.58-0.72] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,342 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	4E-22		0.350863	[0.28-0.42] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,339 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	5E-35		0.437176	[0.37-0.51] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOB	5,366 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	6E-48		0.564917	[0.49-0.64] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APBB2	5,363 Icelandic ancestry individuals	NA	19q13.32		rs7412-T	0.06073	1E-22		0.382691	[0.31-0.46] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19q13.32		rs7412-T	NR	5E-1765		0.3451	[0.34-0.35] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	19q13.32		rs7412-T	0.041083	1E-204		0.278855	[0.26-0.3] unit decrease	Illumina [13476599] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	7E-16		0.1409	[0.11-0.18] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q13.32		rs7412-T	NR	4E-16		0.0291	[0.022-0.036] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	5E-19		0.1648	[0.13-0.2] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	19q13.32		rs7412-T	0.042385912	2E-9		0.2062004	[0.14-0.27] unit decrease	Illumina [13427135] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	3E-20		0.1121	[0.088-0.136] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	1E-10		0.0775	[0.054-0.101] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	4E-8		0.0735	[0.047-0.1] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	2E-20		0.0977	[0.077-0.118] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	8E-22		0.0939	[0.075-0.113] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19q13.32		rs7412-T	NR	1E-276		0.3396	[0.32-0.36] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19q13.32		rs7412-T	0.041450897	3E-93		0.50608385	[0.46-0.55] unit decrease	Illumina [13429980] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	19q13.32		rs7412-T	0.03877	5E-380		0.525747	[0.5-0.55] unit decrease	Illumina [13461863] (imputed)	N
931	chr19	45412078	45412079	rs7412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19q13.32		rs7412-T	NR	3E-3040		0.477	[0.47-0.48] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
931	chr19	45412078	45412079	rs7412	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs7412-T	0.057	2E-31		0.459	[0.403-0.523]	NR [38043082] (imputed)	N
931	chr19	45412078	45412079	rs7412	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	4,010 European ancestry cases, 4,672 European ancestry controls	NA	19q13.32		rs7412-T	0.056	6E-15		0.527	[0.449-0.619]	NR [38043082] (imputed)	N
931	chr19	45412078	45412079	rs7412	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs7412-?	NR	4E-123		0.435261	unit decrease	NR [10687077] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	2E-13		0.0346	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	7E-136		0.1152	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	2E-2358		0.4758	[0.47-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	1E-11		0.0316	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	2E-3838		0.6015	[0.59-0.61] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	4E-95		0.1086	[0.098-0.119] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	1E-55		0.0762	[0.067-0.086] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	1E-41		0.0678	[0.058-0.078] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	9E-13		0.0331	[0.024-0.042] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	5E-105		0.1012	[0.092-0.11] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	4E-6067		0.7518	[0.74-0.76] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	6E-155		0.1291	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOE	rs7412-?		2E-465		0.3619	[0.35-0.38] unit increase	Illumina [31500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOE	rs7412-?		1E-872		0.576	[0.56-0.59] unit increase	Illumina [31500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs7412-T	0.0786	1E-11		0.2949049	[0.21-0.38] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
931	chr19	45412078	45412079	rs7412	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs7412-T	0.0785	2E-33		0.36457455	[0.3-0.42] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
931	chr19	45412078	45412079	rs7412	33134509	Tang ME	2020-09-10	Neurol Genet	Matrix metalloproteinase-degraded type I collagen is associated with APOE/TOMM40 variants and preclinical dementia.	Serum total cholesterol levels	4,891 Danish ancestry individuals	NA	19q13.32	APOE	rs7412-?	NR	3E-47				NR [NR]	N
931	chr19	45412078	45412079	rs7412	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19q13.32	APOE	rs7412-?		9E-20	(EA)	0.45077777	[0.35-0.55] unit decrease	Illumina [13620258] (imputed)	N
931	chr19	45412078	45412079	rs7412	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19q13.32	APOE	rs7412-?		4E-42	(African American)	0.5423542	[0.47-0.62] unit decrease	Illumina [13620258] (imputed)	N
931	chr19	45412078	45412079	rs7412	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19q13.32	APOE	rs7412-?		3E-6	(African American)	0.18373023	[0.11-0.26] unit increase	Illumina [13620258] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.080265	2E-62		0.06874552	[0.061-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.08027	6E-50		0.061096776	[0.053-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.0802850000000001	3E-132		0.1006801	[0.093-0.109] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.080292	2E-17		0.03567781	[0.027-0.044] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.080256	2E-35		0.051357955	[0.043-0.059] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.32	APOE	rs7412-T	0.080298	7E-19		0.036913395	[0.029-0.045] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.927438	7E-155				Affymetrix, Illumina [22063850] (imputed)	N
931	chr19	45412078	45412079	rs7412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.927455	2E-157		0.097078	[0.09-0.104] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
931	chr19	45412078	45412079	rs7412	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	19q13.32		rs7412-?	0.08109	2E-35		0.01069	unit increase	NR [6200000] (imputed)	N
931	chr19	45412078	45412079	rs7412	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.32		rs7412-?	NR	6E-17		0.0311298	[0.024-0.038] unit increase	NR [6912294] (imputed)	N
931	chr19	45412078	45412079	rs7412	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.32		rs7412-C	0.917927	4E-20		0.033	[0.025-0.041] unit increase	NR [7250403] (imputed)	N
931	chr19	45412078	45412079	rs7412	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs7412-?	NR	2E-113		0.353	[0.32-0.38] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45412078	45412079	rs7412	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs7412-?	NR	2E-209		0.489	[0.46-0.52] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45412078	45412079	rs7412	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol percent change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19q13.32	APOE	rs7412-T	0.07	1E-36		0.202	[0.17-0.23] unit decrease	Affymetrix [13250765] (imputed)	N
931	chr19	45412078	45412079	rs7412	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19q13.32	APOE	rs7412-T	0.07	1E-78		0.068	[0.06-0.076] unit decrease	Affymetrix [13250765] (imputed)	N
931	chr19	45412078	45412079	rs7412	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels (on statin treatment)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19q13.32	APOE	rs7412-T	0.07	1E-89		0.078	[0.07-0.086] unit decrease	Affymetrix [13250765] (imputed)	N
931	chr19	45412078	45412079	rs7412	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	19q13.32	APOE	rs7412-T	0.07	2E-118		0.086	[0.078-0.094] unit decrease	Affymetrix [13250765] (imputed)	N
931	chr19	45412078	45412079	rs7412	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Total cholesterol levels	14,126 African ancestry individuals	NA	19q13.32		rs7412-C	0.888	4E-84		0.377293	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
931	chr19	45412078	45412079	rs7412	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	LDL cholesterol levels	14,126 African ancestry individuals	NA	19q13.32		rs7412-C	0.888	1E-189		0.559438	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
931	chr19	45412078	45412079	rs7412	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	HDL cholesterol levels	14,126 African ancestry individuals	NA	19q13.32		rs7412-C	0.888	5E-19		0.173698	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
931	chr19	45412078	45412079	rs7412	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Total cholesterol levels	2,045 European ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	6E-6		0.3107	[0.18-0.44] unit decrease	Illumina [~ 9300000] (imputed)	N
931	chr19	45412078	45412079	rs7412	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Low density lipoprotein cholesterol levels	2,045 European ancestry individuals	NA	19q13.32	NR	rs7412-T	NR	1E-17		0.5648	[0.44-0.69] unit decrease	Illumina [~ 9300000] (imputed)	N
931	chr19	45412078	45412079	rs7412	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 25,483 European ancestry controls	1,911 European ancestry cases, 4,987 European ancestry controls	19q13.32	APOE	rs7412-T	0.09	3E-12		1.47	[1.32-1.64]	Illumina [up to 9449311] (imputed)	N
931	chr19	45412078	45412079	rs7412	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	19q13.32	APOE	rs7412-T	0.09	2E-12		1.39	1.26-1.53	Illumina [up to 9449311] (imputed)	N
931	chr19	45412078	45412079	rs7412	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 25,483 European ancestry controls	2,557 European ancestry cases, 4,987 European ancestry controls	19q13.32	APOE	rs7412-T	0.09	2E-11		1.28	[1.19-1.37]	Affymetrix, Illumina [up to 10786384] (imputed)	N
931	chr19	45412078	45412079	rs7412	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	19q13.32	APOE	rs7412-T	0.09	2E-12		1.26	1.19-1.35	Affymetrix, Illumina [up to 10786384] (imputed)	N
931	chr19	45412078	45412079	rs7412	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs7412-?	NR	2E-113		15.5764	[14.23-16.93] unit decrease	Illumina [32003504] (imputed)	N
931	chr19	45412078	45412079	rs7412	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs7412-?	NR	1E-209		19.17228	[17.96-20.39] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45412078	45412079	rs7412	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.32	NR	rs7412-?	NR	4E-24		2.275863	[1.84-2.72] unit increase	Illumina [31978362] (imputed)	N
931	chr19	45412078	45412079	rs7412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.0784037	5E-14		0.11077729	[0.082-0.14] unit decrease	Affymetrix [7288503] (imputed)	N
931	chr19	45412078	45412079	rs7412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.082871	4E-10		0.091432184	[0.063-0.12] unit decrease	Affymetrix [7288503] (imputed)	N
931	chr19	45412078	45412079	rs7412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.0800838	3E-17		0.10479492	[0.08-0.129] unit decrease	Affymetrix [7288503] (imputed)	N
931	chr19	45412078	45412079	rs7412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.0820167	9E-21		0.10300063	[0.081-0.125] unit decrease	Affymetrix [7288503] (imputed)	N
931	chr19	45412078	45412079	rs7412	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.0792273	4E-197		0.31031173	[0.29-0.33] unit decrease	Affymetrix [7288503] (imputed)	N
931	chr19	45412078	45412079	rs7412	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOE	rs7412-C	0.947	3E-33		2.173913	[1.89-2.44]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45412078	45412079	rs7412	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset at age over 80)	2,399 European ancestry cases, 4,160 European ancestry controls	NA	19q13.32	APOE	rs7412-C	0.93	6E-12		1.8518518	[1.54-2.22]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45412078	45412079	rs7412	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs7412-C	0.928632	4E-13		2.214072	[1.79-2.64]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45412078	45412079	rs7412	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs7412-C	0.9279	1E-7	(females)	2.065872	[1.58-2.55]	Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45412078	45412079	rs7412	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.07994	1E-99		21.199877	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45412078	45412079	rs7412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.32		rs7412-?	NR	4E-21				NR [~ 8900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.32		rs7412-?	NR	1E-169				NR [~ 8900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs7412-?	NR	1E-9				NR [~ 8900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.32		rs7412-?	NR	2E-12				NR [~ 8900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19q13.32		rs7412-?	NR	3E-63				NR [~ 8900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.32	APOE	rs7412-T	0.0833	2E-11		0.3255	[0.23-0.42] mmHg decrease	Affymetrix [NR] (imputed)	N
931	chr19	45412078	45412079	rs7412	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.32	APOE	rs7412-T	0.0833	4E-24		0.3606	[0.29-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
931	chr19	45412078	45412079	rs7412	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	19q13.32	APOE	rs7412-?	NR	2E-7	(LDL)	0.42	[0.26-0.58] unit decrease	Illumina [14948665] (imputed)	N
931	chr19	45412078	45412079	rs7412	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.08	1E-14		0.0119	[0.009-0.0148] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
931	chr19	45412078	45412079	rs7412	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19q13.32	APOE	rs7412--T	0.0817	5E-31		0.3753	[0.31-0.44] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30111768	Yao C	2018-08-15	Nat Commun	Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease.	Blood protein levels	6861 European ancestry individuals	4298 European ancestry individuals	19q13.32		rs7412-T	0.076340503	1E-52	(APOB)	0.5368132	unit decrease	Affymetrix, Illumina [8509364] (imputed)	N
931	chr19	45412078	45412079	rs7412	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	19q13.32	APOE	rs7412-T	0.081	7E-17				Affymetrix [28000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	9E-9	(GNAI3, 12650_43_3)	0.28634983	[0.19-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	9E-30	(APOB, 2797_56_2)	0.57334346	[0.48-0.67] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	8E-18	(CKAP2, 5345_51_3)	0.429486	[0.33-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	8E-14	(APBB2, 12753_6_3)	0.37522233	[0.28-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	7E-70	(CEP57, 11276_1_3)	0.89456034	[0.8-0.99] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	7E-10	(SUMF1, 6941_11_3)	0.31651577	[0.22-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	6E-10	(TP53I11, 13022_20_3)	0.31360647	[0.21-0.41] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	5E-11	(LRP1B, 7640_29_3)	0.32986814	[0.23-0.43] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	4E-24	(GGT2, 6334_9_3)	0.51045436	[0.41-0.61] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	4E-210	(UBA2, 12500_88_3)	1.4728388	[1.39-1.56] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	4E-16	(KLRC3, 11571_75_3)	0.4164335	[0.32-0.52] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-9	(MAPK8, 3825_18_2)	0.30471954	[0.2-0.4] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-87	(ARL2, 12587_65_3)	0.97562826	[0.88-1.07] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-56	(APOE, 2418_55_9)	0.79527044	[0.7-0.89] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-48	(Il16, 7672_7_3)	0.7322723	[0.64-0.83] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-43	(APOE, 2937_10_2)	0.69674724	[0.6-0.79] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-37	(VIMP, 11286_78_3)	0.62421465	[0.53-0.72] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-14	(APOE, 2938_55_2)	0.38513675	[0.29-0.48] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	3E-10	(CD200R1L, 8980_19_3)	0.32238275	[0.22-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-92	(C5orf38, 6378_2_3)	1.016853	[0.92-1.11] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-80	(CUZD1, 7943_16_3)	0.9441912	[0.85-1.04] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-62	(S100A13, 7223_60_3)	0.82494706	[0.73-0.92] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-41	(PSME1, 5918_5_3)	0.66324866	[0.57-0.76] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-34	(HBQ1, 7965_25_3)	0.60210574	[0.51-0.7] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-27	(FAM159B, 10635_33_3)	0.5431671	[0.45-0.64] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-25	(TBCA, 12501_10_3)	0.51885974	[0.42-0.62] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-23	(KIN, 14643_27_3)	0.4950121	[0.4-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-20	(AKT2, 14685_17_3)	0.46390483	[0.37-0.56] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-147	(VPS29, 14318_1_3)	1.2477906	[1.16-1.34] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	2E-13	(HLA-DRB3, 6962_5_3)	0.37757713	[0.28-0.48] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-46	(CRYZL1, 9207_60_3)	0.7133005	[0.62-0.81] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-302	(BIRC2, 10046_55_3)	1.6999545	[1.62-1.78] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-20	(TMCC3, 8922_4_3)	0.4673718	[0.37-0.56] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-20	(APOE, 5312_49_3)	0.4696812	[0.37-0.57] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-19	(CTF1, 13732_79_3)	0.4569444	[0.36-0.56] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-13	(KMT2C, 11402_17_3)	0.38122472	[0.28-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs7412-C	0.93734375	1E-13	(IFI16, 12893_159_3)	0.3773793	[0.28-0.48] unit increase	Illumina [> 1000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	7E-39	(Histone-lysine N-methyltransferase 2C, KMT2C.11402.17.3)	0.59	[0.49-0.69] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	7E-16	(Disintegrin and metalloproteinase domain-containing protein 11, ADAM11.6586.19.3)	0.37	[0.27-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	4E-81	(Guanine nucleotide-binding protein G(k) subunit alpha, GNAI3.12650.43.3)	0.84	[0.76-0.92] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	4E-25	(Cadherin-related family member 5, CDHR5.9962.1.3)	0.47	[0.37-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	4E-137	(Proteasome activator complex subunit 1, PSME1.5918.5.3)	1.06	[0.98-1.14] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	3E-484	(Vacuolar protein sorting-associated protein 29, VPS29.14318.1.3)	1.69	[1.61-1.77] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	2E-58	(Cell surface glycoprotein CD200 receptor 2, CD200R1L.8980.19.3)	0.72	[0.64-0.8] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	2E-36	(Amyloid beta A4 precursor protein-binding family B member 2, APBB2.12753.6.3)	0.57	[0.47-0.67] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	2E-28	(Pregnancy-specific beta-1-glycoprotein 5, PSG5.9314.9.3)	0.5	[0.4-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	2E-14	(Pseudokinase FAM20A, FAM20A.6433.57.3)	0.35	[0.25-0.45] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	2E-120	(Selenoprotein S, VIMP.11286.78.3)	1.01	[0.93-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	1E-24	(DNA/RNA-binding protein KIN17, KIN.14643.27.3)	0.47	[0.37-0.57] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.078	1E-12	(Steroidogenic acute regulatory protein, mitochondrial, STAR.10085.25.3)	0.33	[0.23-0.43] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45412078	45412079	rs7412	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs7412-?	NR	9E-62				Affymetrix [7795605] (imputed)	N
931	chr19	45412078	45412079	rs7412	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs7412-?	NR	2E-76				Affymetrix [7795605] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	NR	2E-32		0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.916	5E-31	(EA)	0.09	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	NR	1E-300		0.348	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.952	3E-31	(Hispanic)	0.411	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.916	1E-300	(EA)	0.342	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.892	3E-20	(AA)	0.381	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	NR	1E-300		0.498	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.952	9E-59	(Hispanic)	0.574	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.916	1E-300	(EA)	0.493	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.892	2E-36	(AA)	0.522	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	NR	2E-36		0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.952	2E-7	(Hispanic)	0.152	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs7412-C	0.916	5E-29	(EA)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45412078	45412079	rs7412	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	19q13.32	APOC1, APOE, TOMM40	rs7412-T	0.079	2E-35		0.1368	[0.12-0.16] unit decrease	Affymetrix [at least 7947838] (imputed)	N
931	chr19	45412078	45412079	rs7412	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19q13.32	APOC1, APOE, TOMM40	rs7412-T	0.0799	3E-39		0.1603	[0.14-0.18] unit decrease	NR [8041861] (imputed)	N
931	chr19	45412078	45412079	rs7412	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.32	APOC1, APOE, TOMM40	rs7412-T	0.08	3E-39		0.16	[0.14-0.18] unit decrease	Affymetrix [7947838] (imputed)	N
931	chr19	45412078	45412079	rs7412	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein-associated phospholipase A2 activity change in response to darapladib treatment in cardiovascular disease	10,874 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	19q13.32	APOE	rs7412-T	0.06071	2E-27		0.04	[-1.5672-1.6472] unit decrease	Affymetrix, Illumina [13572687] (imputed)	N
931	chr19	45412078	45412079	rs7412	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Lipoprotein phospholipase A2 activity in cardiovascular disease	22,156 European, Asian, African, Arabic, Native American, Pacific Islander and other ancestry	NA	19q13.32	APOE	rs7412-T	0.06071	8E-78		17.11	[15.31-18.91] (nmol/min/ml) decrease	Affymetrix, Illumina [13572687] (imputed)	N
931	chr19	45412078	45412079	rs7412	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	19q13.32	APOE	rs7412-?	NR	3E-105		2.3065467		Illumina [241551]	N
931	chr19	45412078	45412079	rs7412	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	19q13.32	APOE, APOC1	rs7412-C	0.922	2E-19		1.15	[1.12-1.19]	Affymetrix [9149595] (imputed)	N
931	chr19	45412078	45412079	rs7412	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Total cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19q13.32	APOC1, APOC2, APOE	rs7412-T	0.079	1E-8		0.27	[0.18-0.36] unit decrease	Illumina [at least 13541454] (imputed)	N
931	chr19	45412078	45412079	rs7412	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Low density lipoprotein cholesterol levels	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	19q13.32	APOC2, APOE, APOC1	rs7412-T	0.079	3E-19		0.419	[0.33-0.51] unit decrease	Illumina [at least 13541454] (imputed)	N
931	chr19	45412078	45412079	rs7412	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein(a) levels adjusted for apolipoprotein(a) isoforms	13,781 European ancestry individuals	NA	19q13.32	APOE	rs7412-T		3E-9		2.78	[1.69-3.87] unit decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
931	chr19	45412078	45412079	rs7412	28512139	Mack S	2017-05-16	J Lipid Res	A genome-wide association meta-analysis on lipoprotein (a) concentrations adjusted for apolipoprotein (a) isoforms.	Lipoprotein (a) levels	13,781 European ancestry individuals	NA	19q13.32	APOE	rs7412-T		3E-10		3.34	[2.03-4.65] mg/dL decrease	Affymetrix, Illumina [at least 7600000] (imputed)	N
931	chr19	45412078	45412079	rs7412	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	LDL cholesterol levels	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	656 Han Chinese ancestry cases, 933 Han Chinese ancestry controls	19q13.32	APOE	rs7412-T	NR	7E-15		0.313	[0.23-0.39] mmol/L decrease	Illumina [4642479] (imputed)	N
931	chr19	45412078	45412079	rs7412	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs7412-T	0.066	8E-315	(Trans-ethnic initial)	0.374	[0.36-0.39] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	19q13.32	APOC1, APOE, APOC2	rs7412-T	0.066	2E-286	(Trans-ethnic initial)	0.59	[0.57-0.61] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
931	chr19	45412078	45412079	rs7412	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	19q13.32	APOE	rs7412-T	0.0779	6E-14		0.1564597	[0.12-0.2] mg/dl increase	Illumina [24111857] (imputed)	N
931	chr19	45412078	45412079	rs7412	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	19q13.32	APOE	rs7412-T	0.0779	5E-94		0.41957754	[0.38-0.46] mg/dl decrease	Illumina [24111857] (imputed)	N
931	chr19	45412078	45412079	rs7412	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	19q13.32	chr19mb45	rs7412-T	0.078406042	4E-10		0.3826	[0.26-0.5] unit decrease	Affymetrix [~ 9800000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0792	4E-20		0.05980158	[0.047-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0792	9E-18		0.05598592	[0.043-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0793	2E-44		0.08988161	[0.077-0.102] unit increase	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0792	4E-38		0.08313494	[0.071-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0792	3E-38		0.08416118	[0.071-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.0792	1E-35		0.08121525	[0.068-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27179730	Allen NB	2016-01-23	Am Heart J	Genetic loci associated with ideal cardiovascular health: A meta-analysis of genome-wide association studies.	Ideal cardiovascular health (clinical and behavioural)	883 European ancestry individuals with clinical and behavioral ideal cardiovascular health, 10,825 European ancestry individuals without clinical and behavioral ideal cardiovascular health	522 European ancestry individuals	19q13.32	APOE2	rs7412-?	NR	9E-16				Affymetrix [~ 25000000] (imputed)	N
931	chr19	45412078	45412079	rs7412	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	19q13.32	APOE	rs7412-T	0.06	2E-120	(Free cholesterol in large LDL)	0.59	[0.53-0.65] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
931	chr19	45412078	45412079	rs7412	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	19q13.32	APOE	rs7412-C	0.93	8E-239		0.413	[0.39-0.44] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr19	45412078	45412079	rs7412	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	19q13.32	APOE	rs7412-T	0.12	3E-53	(LDL-C)	0.48	[0.42-0.54] unit decrease	Affymetrix [~ 3700000] (imputed)	N
931	chr19	45412078	45412079	rs7412	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	19q13.32	APOE	rs7412-T	0.12	2E-30	(TC)	0.09	[0.070-0.110] unit decrease	Affymetrix [~ 3700000] (imputed)	N
931	chr19	45412078	45412079	rs7412	23067351	Rasmussen-Torvik LJ	2012-08-23	Clin Transl Sci	High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE.	LDL cholesterol	1,249 African American individuals	NA	19q13.32	APOE	rs7412-?	0.10	2E-9		12.3	[8.4-16.3] mg/dL decrease	Illumina [910341]	N
931	chr19	45412078	45412079	rs7412	22331829	Chasman DI	2012-02-13	Circ Cardiovasc Genet	Genetic determinants of statin-induced low-density lipoprotein cholesterol reduction: the Justification for the Use of Statins in Prevention: an Intervention Trial Evaluating Rosuvastatin (JUPITER) trial.	Response to statins (LDL cholesterol change)	6,989 European ancestry individuals	NA	19q13.32	APOE	rs7412-?	NR	2E-47	(baseline LDL-C)	6.2	[5.42-6.98] mg/dL decrease	Illumina [814418]	N
931	chr19	45412078	45412079	rs7412	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	19q13.32	APOC2, APOE, APOC1	rs7412-?	NR	3E-58	(L-LDL-FC)	0.75	[0.65-0.85] unit decrease	Illumina [~ 7700000] (imputed)	N
931	chr19	45412078	45412079	rs7412	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors	525 European ancestry individuals	2,442 Finnish ancestry individuals	19q13.32	APOE	rs7412-?	NR	9E-19	(LDL-cholesterol)	11.96	[9.33-14.59] unit increase	Illumina [2173391] (imputed)	N
931	chr19	45412533	45412534	rs367866106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs367866106-C	0.993501	8E-65		0.434081	[0.38-0.48] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412533	45412534	rs367866106	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs367866106-C	0.993501	2E-63		0.427993	[0.38-0.48] unit increase	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-8		0.0680769	[0.044-0.092] unit increase	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	1E-49		0.186329	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	1E-37		0.161867	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-39		0.163673	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	8E-41		0.167964	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-33		0.14617	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	7E-37		0.158994	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	9E-17		0.0996869	[0.076-0.123] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-60		0.205183	[0.18-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-43		0.173393	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	4E-36		0.156929	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-42		0.171073	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	9E-34		0.147255	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-40		0.16607	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	8E-14		0.0892732	[0.066-0.113] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-47		0.180729	[0.16-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-40		0.166983	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	4E-37		0.157562	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	1E-39		0.164097	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	2E-29		0.137465	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	1E-45		0.177892	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	8E-42		0.17054	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-35		0.154478	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	3E-38		0.16192	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	8E-40		0.164975	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	4E-39		0.164529	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	4E-32		0.143419	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-18		0.105755	[0.082-0.13] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-45		0.17756	[0.15-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	2E-35		0.157079	[0.13-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	1E-39		0.164079	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	8E-32		0.142743	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs1081105-A	0.972379	5E-40		0.166668	[0.14-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45412954	45412955	rs1081105	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	APOE	rs1081105-C	0.02756	1E-231		32.50298	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45412954	45412955	rs1081105	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs1081105-?	NR	1E-136				Affymetrix [7795605] (imputed)	N
931	chr19	45412954	45412955	rs1081105	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs1081105-?	NR	1E-162				Affymetrix [7795605] (imputed)	N
931	chr19	45413224	45413225	rs34078567	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.32	intergenic	rs34078567-?	0.6105	1E-112		0.065	[0.059-0.071] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	4E-172		0.212315	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91987	4E-315		0.280178	[0.27-0.29] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91947	7E-201		0.216334	[0.2-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-127		0.173408	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-162		0.197289	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-240		0.237043	[0.22-0.25] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-136		0.182765	[0.17-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	4E-282		0.259613	[0.25-0.27] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-95		0.151964	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-270		0.261535	[0.25-0.28] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-136		0.179608	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-177		0.211401	[0.2-0.23] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-139		0.172329	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-44		0.104811	[0.09-0.12] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-24		0.0767396	[0.062-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-163		0.205892	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-116		0.162088	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-260		0.257727	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-114		0.166217	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	4E-11		0.047301	[0.033-0.061] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	7E-70		0.126406	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-64		0.119938	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	2E-17		0.0637474	[0.049-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-64		0.124284	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-66		0.125864	[0.11-0.14] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-92		0.149197	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	6E-28		0.0803838	[0.066-0.095] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	3E-9		0.0436126	[0.029-0.058] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-64		0.12396	[0.11-0.14] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	6E-141		0.185561	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	7E-116		0.169141	[0.15-0.18] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91947	4E-59		0.113418	[0.1-0.127] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-83		0.139321	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919429	7E-109		0.163774	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-149		0.19143	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs1065853-G	0.918825	4E-312		0.286817	[0.27-0.3] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-121		0.17487	[0.16-0.19] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	8E-67		0.118343	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-233		0.247233	[0.23-0.26] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-77		0.140558	[0.13-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	8E-285		0.273812	[0.26-0.29] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-157		0.189925	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-163		0.198846	[0.18-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-41		0.100737	[0.086-0.115] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-51		0.103758	[0.09-0.117] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	4E-28		0.0790253	[0.065-0.093] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	2E-43		0.0984031	[0.084-0.112] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	5E-157		0.198416	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	9E-141		0.188763	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91987	3E-140		0.186309	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91947	2E-24		0.0687997	[0.056-0.082] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	9E-260		0.232335	[0.22-0.25] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-126		0.180501	[0.17-0.2] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	6E-248		0.250461	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-21		0.0712435	[0.057-0.086] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-53		0.103029	[0.09-0.116] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-165		0.200631	[0.19-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-87		0.149036	[0.13-0.16] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-22		0.0654593	[0.052-0.079] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	1E-25		0.0757245	[0.062-0.09] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919422	5E-36		0.0905314	[0.076-0.105] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919518	5E-9		0.0381195	[0.025-0.051] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	9E-260		0.2575	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-181		0.196965	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-33		0.0905753	[0.076-0.105] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-14		0.0588341	[0.044-0.074] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-251		0.256848	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-87		0.139009	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-116		0.167558	[0.15-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	4E-112		0.169833	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-94		0.151658	[0.14-0.17] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919429	4E-165		0.199627	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-184		0.220964	[0.21-0.24] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-160		0.195181	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs1065853-G	0.918825	3E-51		0.11514	[0.1-0.13] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	8E-43		0.102773	[0.088-0.117] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-236		0.223922	[0.21-0.24] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-167		0.209243	[0.19-0.22] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	9E-19		0.0676188	[0.053-0.083] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-21		0.0639593	[0.051-0.077] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-99		0.155378	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-246		0.255121	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs1065853-G	0.91987	2E-300		0.270261	[0.26-0.28] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-67		0.132507	[0.12-0.15] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-234		0.249152	[0.23-0.26] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	1E-137		0.180739	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919429	4E-148		0.192875	[0.18-0.21] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	4E-275		0.253507	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs1065853-G	0.918825	1E-20		0.0709055	[0.056-0.086] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-278		0.244988	[0.23-0.26] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-251		0.257073	[0.24-0.27] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	5E-21		0.0716427	[0.057-0.087] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	3E-28		0.0740066	[0.061-0.087] unit increase	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	7E-130		0.177745	[0.16-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs1065853-G	0.919419	2E-39		0.0915419	[0.078-0.105] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413232	45413233	rs1065853	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19q13.32	NR	rs1065853-T	0.0766773	2E-23		0.0388	[0.031-0.046] unit increase	Affymetrix [23037915] (imputed)	N
931	chr19	45413232	45413233	rs1065853	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		19q13.32	TOMM40, APOE, APOC1	rs1065853-G	NR	1E-542		0.134919	[0.13-0.14] nmol/l increase	NR [19000000] (imputed)	N
931	chr19	45413232	45413233	rs1065853	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	19q13.32	APOE	rs1065853-G	0.919748	2E-16		1.18	[1.13-1.22]	NR [10903881] (imputed)	N
931	chr19	45413232	45413233	rs1065853	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19q13.32	NR	rs1065853-T	0.06262	2E-15		0.0376454	[0.028-0.047] unit increase	Affymetrix [3505788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.32	APOC1	rs1065853-T	0.0801690000000001	8E-87		0.0810815	[0.073-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45413232	45413233	rs1065853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.32	APOC1	rs1065853-T	0.080172	2E-91		0.082768306	[0.075-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45413232	45413233	rs1065853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.32	APOC1	rs1065853-T	0.0801730000000001	1E-83		0.079141825	[0.071-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45413232	45413233	rs1065853	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.32	NR	rs1065853-T	0.082083	8E-14		0.027397	[0.02-0.035] unit increase	Affymetrix [16668957] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean-maximum)	22,179 British ancestry individuals	NA	19q13.32	NR	rs1065853-G	0.92	8E-17		0.023	[0.017-0.029] unit increase	NR [NR] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	19q13.32	BCAM, PVRL2, TOMM40, APOE, APOC1, APOC1P1, APOC4-APOA2, APOC2, CLPTM1, APOC4, RELB	rs1065853-G	0.92	6E-15		0.021	[0.015-0.027] unit increase	NR [NR] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (mean)	10,708 British ancestry men, 11,471 British ancestry women	NA	19q13.32	BCAM, PVRL2, TOMM40, APOE, APOC1, APOC1P1, APOC4-APOA2, APOC2, CLPTM1, APOC4, RELB	rs1065853-G	0.92	4E-10	(men)	0.027	[0.019-0.035] unit increase	NR [NR] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31801372	Strawbridge RJ	2019-12-05	Arterioscler Thromb Vasc Biol	Carotid Intima-Media Thickness: Novel Loci, Sex-Specific Effects, and Genetic Correlations With Obesity and Glucometabolic Traits in UKB.	Carotid intima media thickness (maximum)	22,179 British ancestry individuals	NA	19q13.32	PVRL2, BCAM, TOMM40, APOE, APOC1, APOC1P1, APOC2, CLPTM1, APOC4, RELB	rs1065853-G	0.92	7E-14		0.026	[0.02-0.032] unit increase	NR [NR] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs1065853-?	NR	5E-111		15.28366	[13.95-16.62] unit decrease	Illumina [32003504] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs1065853-?	NR	8E-206		18.84085	[17.63-20.05] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45413232	45413233	rs1065853	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.32	NR	rs1065853-?	NR	7E-25		2.292357	[1.86-2.73] unit increase	Illumina [31978362] (imputed)	N
931	chr19	45413232	45413233	rs1065853	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19q13.32	APOE	rs1065853-T	0.063	2E-26		13.1251	[10.72-15.53] unit decrease	Affymetrix [at least 805769] (imputed)	N
931	chr19	45413232	45413233	rs1065853	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Low density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19q13.32	APOE	rs1065853-T		3E-54		0.1615	[0.14-0.18] unit decrease	Affymetrix [at least 805769] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	5E-205	(Protein CEI, C5orf38.6378.2.3)	1.25	[1.17-1.33] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	5E-17	(ER membrane protein complex subunit 4, EMC4.13516.46.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	5E-16	(Low-density lipoprotein receptor-related protein 1B, LRP1B.7640.29.3)	0.37	[0.27-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	4E-60	(RAC-beta serine/threonine-protein kinase, AKT2.14685.17.3)	0.73	[0.65-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	3E-90	(Inactive gamma-glutamyltranspeptidase 2, GGT2.6334.9.3)	0.88	[0.8-0.96] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	3E-74	(Collectin-10, COLEC10.6558.5.3)	0.81	[0.73-0.89] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	3E-26	(Nuclear receptor-binding protein, NRBP1.12616.45.3)	0.49	[0.39-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	3E-14	(Interleukin-22 receptor subunit alpha-1, IL22RA1.3620.67.2)	0.35	[0.25-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	2E-58	(Apolipoprotein E (isoform E3), APOE.2937.10.2)	0.72	[0.64-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	2E-27	(Tumor protein p53-inducible protein 11, TP53I11.13022.20.3)	0.5	[0.4-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	2E-26	(Surfeit locus protein 1, SURF1.8009.121.3)	0.49	[0.39-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	2E-20	(Apolipoprotein B, APOB.2797.56.2)	0.43	[0.33-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	2E-19	(Beta-defensin 119, DEFB119.8370.102.3)	0.41	[0.31-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-99	(Cardiotrophin-1, CTF1.13732.79.3)	0.92	[0.84-1] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-97	(Hemoglobin subunit theta-1, HBQ1.7965.25.3)	0.92	[0.84-1] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-39	(Cytoskeleton-associated protein 2, CKAP2.5345.51.3)	0.6	[0.5-0.7] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-38	(Protocadherin beta-10, PCDHB10.9963.19.3)	0.59	[0.49-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-34	(Uncharacterized protein C14orf93, C14orf93.6439.59.3)	0.56	[0.46-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-239	(Centrosomal protein of 57 kDa, CEP57.11276.1.3)	1.33	[1.25-1.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-162	(CUB and zona pellucida-like domain-containing protein 1, CUZD1.7943.16.3)	1.14	[1.06-1.22] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-119	(Quinone oxidoreductase-like protein 1, CRYZL1.9207.60.3)	1.0	[0.92-1.08] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1, APOE	rs1065853-T	0.078	1E-11	(Repulsive guidance molecule A, RGMA.5483.1.3)	0.31	[0.21-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in LDL	8,372 Finnish ancestry males	NA	19q13.32	APOE	rs1065853-?	NR	5E-50		0.573	unit decrease	Illumina [15144991] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Serum total cholesterol levels	8,372 Finnish ancestry males	NA	19q13.32	APOE	rs1065853-?	NR	4E-25		0.399	unit decrease	Illumina [15144991] (imputed)	N
931	chr19	45413232	45413233	rs1065853	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large LDL	8,372 Finnish ancestry males	NA	19q13.32	APOE	rs1065853-?	NR	1E-62		0.642	unit decrease	Illumina [15144991] (imputed)	N
931	chr19	45413232	45413233	rs1065853	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	19q13.32	APOE	rs1065853-G	0.93	5E-324		0.603	[0.58-0.63] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr19	45413232	45413233	rs1065853	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	19q13.32	APOE	rs1065853-?	NR	2E-9	(LDL cholesterol)			Illumina [up to 10879115] (imputed)	N
931	chr19	45413234	45413236	rs769283491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.32	CTB-129P6.7	rs769283491-G	0.1314	5E-6		0.0538	[0.031-0.077] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
931	chr19	45413234	45413236	rs769283491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.32	CTB-129P6.7	rs769283491-G	0.1314	5E-6		0.0538	[0.031-0.077] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
931	chr19	45413235	45413237	rs376097536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs376097536-G	0.15	7E-330	(Protein S100-A13, S100A13.7223.60.3)	1.17	[1.11-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413235	45413237	rs376097536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs376097536-G	0.15	3E-297	(Leucine-rich repeat neuronal protein 1, LRRN1.11293.14.3)	1.13	[1.07-1.19] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45413235	45413237	rs376097536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs376097536-G	0.15	1E-445	(Tubulin-specific chaperone A, TBCA.12501.10.3)	1.29	[1.23-1.35] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413365	45413366	rs1081106	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs1081106-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45413575	45413576	rs75627662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs75627662-C	0.79394	6E-13		0.0322984	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
931	chr19	45413575	45413576	rs75627662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19q13.32		rs75627662-C	0.79394	1E-8		0.028917	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
931	chr19	45413575	45413576	rs75627662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs75627662-C	0.79394	9E-12		0.0305479	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large VLDL particle concentration	4,734 individuals	NA	19q13.32		rs75627662-T	0.215231106	3E-8		0.150654	[0.098-0.204] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large VLDL	4,734 individuals	NA	19q13.32		rs75627662-T	0.215231106	3E-8		0.151244	[0.098-0.204] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	19q13.32		rs75627662-T	0.120618	9E-44		0.086891	[0.075-0.099] unit increase	Illumina [13471903] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	3E-10		0.113832	[0.078-0.149] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	2E-11		0.118293	[0.084-0.153] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	1E-11		0.0980591	[0.07-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(42:0)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.32		rs75627662-T	NR	3E-10		0.0589	[0.04-0.077] unit increase	Illumina [6720657] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	3E-10		0.0690008	[0.048-0.09] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	1E-11		0.0841541	[0.06-0.108] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	1E-16		0.0848066	[0.065-0.105] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	5E-11		0.0874748	[0.061-0.114] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	7E-11		0.0858314	[0.06-0.112] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs75627662-T	NR	6E-11		0.0822276	[0.058-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45413575	45413576	rs75627662	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	19q13.32	APOE	rs75627662-?		1E-6	(EA)	0.14800182	[0.088-0.208] unit increase	Illumina [13620258] (imputed)	N
931	chr19	45413575	45413576	rs75627662	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	19q13.32	APOE	rs75627662-T	NR	1E-295		36.79	NR z-score increase	Affymetrix [10847151] (imputed)	N
931	chr19	45413575	45413576	rs75627662	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE	rs75627662-T	0.23	4E-8		0.08	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45413575	45413576	rs75627662	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs75627662-T	0.203	4E-27	(Ras-related protein Rab-14, RAB14.14283.12.3)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45413575	45413576	rs75627662	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	19q13.32	APOE	rs75627662-?	NR	6E-42		0.09071	[0.078-0.104] unit increase novel	Illumina [6108953] (imputed)	N
931	chr19	45413575	45413576	rs75627662	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	19q13.32	BCAM, PVRL2, TOMM40, APOE, APOC1, APOC1P1, APOC4, APOC4-APOC2, APOC2, CLPTM1, RELB	rs75627662-T	0.27	8E-7		0.51	[0.31-0.71] unit decrease	Illumina [8437147] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	4E-17		0.063	[0.048-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	5E-20		0.0687	[0.054-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	1E-13		0.0557	[0.041-0.07] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	8E-20		0.0684	[0.054-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	9E-23		0.0737	[0.059-0.088] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs72654472-T	NR	3E-21		0.0711	[0.056-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45414391	45414392	rs72654472	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs72654472-G	0.973014	1E-34		0.076407	[0.064-0.089] unit decrease	NR [NR]	N
931	chr19	45414398	45414399	rs72654473	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in HDL	4,734 individuals	NA	19q13.32		rs72654473-A	0.112651035	2E-8		0.181916	[0.12-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	3E-11		0.149056	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_47:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	2E-13		0.16665	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	9E-12		0.158004	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	2E-11		0.124124	[0.088-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+OAc]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-12		0.0990747	[0.072-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	4E-10		0.146299	[0.1-0.19] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_41:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	2E-12		0.161275	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-11		0.158929	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-11		0.155036	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	6E-11		0.122298	[0.086-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	4E-15		0.146058	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	5E-20		0.129521	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-17		0.123979	[0.096-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	3E-16		0.131351	[0.1-0.163] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-10		0.1182	[0.082-0.154] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Hydroxycholesterol_[M+H-2H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	8E-17		0.128443	[0.098-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	4E-14		0.0994439	[0.074-0.125] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	4E-20		0.145509	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	3E-11		0.108634	[0.077-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	2E-20		0.150142	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	4E-13		0.0973682	[0.071-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-15		0.11759	[0.089-0.146] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414398	45414399	rs72654473	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs72654473-A	NR	1E-19		0.12717	[0.1-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs439401-T	0.361433	2E-8		0.0231316	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
931	chr19	45414450	45414451	rs439401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs439401-T	0.361412	3E-13		0.0279193	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
931	chr19	45414450	45414451	rs439401	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs439401-T	0.361412	2E-15		0.030523	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
931	chr19	45414450	45414451	rs439401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs439401-T	NR	4E-10		0.0886194	[0.061-0.116] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+OAc]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs439401-T	NR	7E-11		0.0589487	[0.041-0.077] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs439401-T	NR	2E-12		0.104464	[0.075-0.133] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs439401-T	NR	4E-11		0.0795729	[0.056-0.103] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs439401-T	NR	2E-10		0.0779676	[0.054-0.102] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45414450	45414451	rs439401	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.32	APOE, APOC1	rs439401-C	0.64	1E-10		6.41	z-score increase	Affymetrix [4314223] (imputed)	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	6E-13	(FAw6)	0.04696534	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	3E-11	(PUFA)	0.045280207	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	1E-10	(LA)	0.04161908	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	7E-9	(LA)	0.06868322	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	2E-7	(FAw6)	0.062403016	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOE	rs439401-?	NR	1E-6	(PUFA)	0.059243318	NR unit decrease	Illumina [609262]	N
931	chr19	45414450	45414451	rs439401	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs439401-?	NR	1E-10		0.0287288	[0.02-0.038] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45414450	45414451	rs439401	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	19q13.32		rs439401-T	0.3715	5E-21	(EA)	0.0291	[0.023-0.035] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45414450	45414451	rs439401	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs439401-?	NR	6E-14		1.486781		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45414450	45414451	rs439401	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOE	rs439401-?	NR	3E-9	(females)	1.5058857		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45414450	45414451	rs439401	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs439401-T	NR	2E-59		0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45414450	45414451	rs439401	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs439401-T	0.543	2E-6	(East Asian)	0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45414450	45414451	rs439401	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs439401-T	0.393	3E-56	(EA)	0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45414450	45414451	rs439401	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	HDL Cholesterol - Triglycerides (HDLC-TG)	22,161 European ancestry individuals	NA	19q13.32	LOC100129500	rs439401-C	NR	1E-8		0.24	[0.16-0.32] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45414450	45414451	rs439401	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	19q13.32	LOC100129500	rs439401-?	NR	1E-6	(AB1-42)			Illumina [322557]	N
931	chr19	45414450	45414451	rs439401	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	19q13.32	APOC2, APOE, APOC1	rs439401-T	0.36	1E-30		5.5	[4.64-6.36] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr19	45414450	45414451	rs439401	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	19q13.32	APOE, TOMM40	rs439401-G	0.68	2E-9		0.09	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
931	chr19	45415284	45415285	rs138235833	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs138235833-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	3E-11		0.149464	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_47:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	1E-12		0.162325	[0.12-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	3E-11		0.15552	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	9E-11		0.121076	[0.085-0.158] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+OAc]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	5E-13		0.100994	[0.074-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_41:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	1E-11		0.156805	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	3E-11		0.156749	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	3E-11		0.153169	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-10		0.119653	[0.083-0.156] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	1E-14		0.144495	[0.11-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	7E-20		0.129723	[0.1-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-17		0.124261	[0.096-0.153] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_38:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	6E-16		0.130615	[0.099-0.162] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	3E-10		0.116064	[0.08-0.152] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Hydroxycholesterol_[M+H-2H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	1E-16		0.128342	[0.098-0.159] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	4E-10		0.100152	[0.069-0.131] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	4E-14		0.0997443	[0.074-0.126] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-20		0.147377	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-11		0.109805	[0.078-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-20		0.151008	[0.12-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-13		0.0995855	[0.073-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	1E-15		0.118464	[0.089-0.147] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs445925-A	NR	2E-19		0.127332	[0.1-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	9E-25	(EstC)	0.11174707	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	9E-23	(S_LDL_FC)	0.12528943	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	9E-20	(FreeC)	0.12521504	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	7E-33	(M_LDL_FC)	0.12283015	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	7E-22	(M_LDL_P)	0.12619837	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-46	(IDL_C)	0.1397795	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-41	(IDL_CE)	0.14173509	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-40	(L_LDL_FC)	0.1259436	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-18	(M_LDL_L)	0.12793489	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-11	(S_HDL_CE)	0.08223939	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-44	(L_LDL_CE)	0.119709365	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-33	(IDL_PL)	0.14400676	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-24	(L_LDL_PL)	0.14124562	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-19	(S_LDL_L)	0.118800394	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	4E-30	(LDL_C)	0.14877708	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	4E-23	(S_LDL_P)	0.123396404	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	3E-28	(L_LDL_P)	0.11992447	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	3E-24	(L_LDL_C)	0.14681195	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	3E-10	(XS_VLDL_C)	0.05908303	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-41	(IDL_FC)	0.1368516	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-39	(IDL_L)	0.13263415	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-25	(M_LDL_PL)	0.11991882	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-25	(M_LDL_C)	0.118303746	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-21	(S_LDL_CE)	0.12615365	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-20	(M_LDL_CE)	0.12408516	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-14	(S_LDL_PL)	0.113241635	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-13	(SM)	0.0583385	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-11	(XS_VLDL_CE)	0.06690391	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-39	(IDL_P)	0.1301837	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-28	(L_LDL_L)	0.1427779	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-24	(S_LDL_C)	0.120512724	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-21	(Serum_C)	0.122032	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-14	(TotCho)	0.031403676	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	9E-22	(IDL_PL)	0.14162584	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	9E-17	(Serum_C)	0.1225845	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	8E-24	(M_LDL_FC)	0.14854407	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	8E-23	(IDL_C)	0.14472964	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	8E-22	(L_LDL_PL)	0.14171253	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	7E-18	(FreeC)	0.12738809	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	7E-17	(M_LDL_PL)	0.123215266	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-21	(IDL_L)	0.13885194	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	6E-18	(M_LDL_L)	0.12793489	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-9	(S_HDL_CE)	0.086718984	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-19	(S_LDL_FC)	0.13133295	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-18	(S_LDL_CE)	0.12797487	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	5E-17	(M_LDL_P)	0.12421425	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	4E-22	(L_LDL_CE)	0.1427191	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	4E-16	(S_LDL_L)	0.12085325	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	4E-15	(S_LDL_P)	0.11667592	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	3E-22	(LDL_C)	0.14336587	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	3E-20	(L_LDL_P)	0.13636917	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-25	(L_LDL_FC)	0.15376271	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-23	(L_LDL_C)	0.14697868	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-21	(L_LDL_L)	0.14018592	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-21	(IDL_CE)	0.14022757	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-19	(M_LDL_C)	0.13365026	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-18	(M_LDL_CE)	0.1292917	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-15	(EstC)	0.11768514	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	2E-14	(S_LDL_PL)	0.113241635	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-8	(SM)	0.0685404	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-23	(IDL_FC)	0.14746542	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-19	(IDL_P)	0.13411988	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	19q13.32	APOC1	rs445925-?	NR	1E-18	(S_LDL_C)	0.13017485	NR unit decrease	Illumina [609262]	N
931	chr19	45415639	45415640	rs445925	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (cAMP stimulated assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	19q13.32	APOE/C1/C2/C4	rs445925-G	0.886	3E-10		0.1933	[0.13-0.25] unit decrease	Illumina [at least 9000000] (imputed)	N
931	chr19	45415639	45415640	rs445925	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (ABCA-1 dependent assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	19q13.32	APOE/C1/C2/C4	rs445925-G	0.886	1E-12		0.2155	[0.16-0.27] unit decrease	Illumina [at least 9000000] (imputed)	N
931	chr19	45415639	45415640	rs445925	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.32	APOE	rs445925-A	NR	5E-25		0.0631036	[0.051-0.076] unit increase	Affymetrix [16832071] (imputed)	N
931	chr19	45415639	45415640	rs445925	28371326	Zhu Y	2017-03-30	J Cell Mol Med	Susceptibility loci for metabolic syndrome and metabolic components identified in Han Chinese: a multi-stage genome-wide association study.	LDL cholesterol levels	862 Han Chinese ancestry cases, 880 Han Chinese ancestry controls	656 Han Chinese ancestry cases, 933 Han Chinese ancestry controls	19q13.32	APOC1	rs445925-A	0.09	1E-13		0.22	[0.16-0.28] mmol/L decrease	Illumina [4642479] (imputed)	N
931	chr19	45415639	45415640	rs445925	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs445925-A	0.09	1E-129	(Asian initial, BMI unadjusted)	0.523	[0.48-0.56] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
931	chr19	45415639	45415640	rs445925	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs445925-A	0.09	4E-59	(BMI unadjusted)	0.568	[0.5-0.64] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
931	chr19	45415639	45415640	rs445925	27179730	Allen NB	2016-01-23	Am Heart J	Genetic loci associated with ideal cardiovascular health: A meta-analysis of genome-wide association studies.	Ideal cardiovascular health (clinical)	2,242 European ancestry individuals with clinical ideal cardiovascular health, 9,466 European ancestry individuals without clinical ideal cardiovascular health	522 European ancestry individuals	19q13.32	APOE, APOC1	rs445925-A	0.14	9E-10		1.72		Affymetrix [~ 25000000] (imputed)	N
931	chr19	45415639	45415640	rs445925	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total cholesterol levels	12,685 Chinese ancestry individuals	NA	19q13.32	APOE	rs445925-A	0.273	4E-26		0.23	[0.19-0.27] unit decrease	Illumina [286795]	N
931	chr19	45415639	45415640	rs445925	25350695	Postmus I	2014-10-28	Nat Commun	Pharmacogenetic meta-analysis of genome-wide association studies of LDL cholesterol response to statins.	Response to statins (LDL cholesterol change)	18,596 European ancestry individuals	23,279 European ancestry individuals	19q13.32	APOE	rs445925-A	0.157	9E-29		0.051	[0.041-0.061] unit decrease	Affymetrix, Illumina, Perlegen [at least 2500000] (imputed)	N
931	chr19	45415639	45415640	rs445925	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	19q13.32	APOE	rs445925-A	0.08	5E-23	(X-11820/cholesterol)	0.089	[0.071-0.107] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
931	chr19	45415639	45415640	rs445925	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	19q13.32	APOE, APOC1	rs445925-T	0.11	1E-56	(activity)	0.071	[0.049-0.093] ng/ml decrease	Illumina [796174]	N
931	chr19	45415639	45415640	rs445925	23031429	Surakka I	2012-10-03	Twin Res Hum Genet	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	19q13.32	APOE/APOC1	rs445925-G	NR	4E-11	(APOE)	0.229	[0.16-0.30] unit decrease	Illumina [~ 2500000] (imputed)	N
931	chr19	45415639	45415640	rs445925	23031429	Surakka I	2012-10-03	Twin Res Hum Genet	A genome-wide association study of monozygotic twin-pairs suggests a locus related to variability of serum high-density lipoprotein cholesterol.	Apolipoprotein Levels	1,720 European ancestry monozygotic twins	NA	19q13.32	APOE, APOC1	rs445925-G	NR	2E-14	(APOB)	0.149	[0.11-0.19] unit increase	Illumina [~ 2500000] (imputed)	N
931	chr19	45415639	45415640	rs445925	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	19q13.32	APOEC1, APOEC2, APOE	rs445925-?	0.06	6E-42				Illumina [~ 2000000] (imputed)	N
931	chr19	45415639	45415640	rs445925	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	19q13.32	APOC1	rs445925-G	0.89	4E-6	(plaque)	1.22	[1.12-1.32]	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45415639	45415640	rs445925	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	19q13.32	APOC1	rs445925-A	0.11	2E-8	(cIMT)	0.0156	[0.01-0.03] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45415712	45415713	rs10414043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs10414043-G	0.872539	6E-15		0.0426157	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
931	chr19	45415712	45415713	rs10414043	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs10414043-G	0.872539	9E-15		0.0426198	[0.032-0.053] unit increase	NR [11722792] (imputed)	N
931	chr19	45415712	45415713	rs10414043	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POLR1C	5,352 Icelandic ancestry individuals	NA	19q13.32		rs10414043-A	0.1261	3E-15		0.215763	[0.16-0.27] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45415712	45415713	rs10414043	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLK2	5,354 Icelandic ancestry individuals	NA	19q13.32		rs10414043-A	0.1261	2E-12		0.194726	[0.14-0.25] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45415712	45415713	rs10414043	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE, APOC1	rs10414043-A	0.17	2E-20		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45415934	45415935	rs7256200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs7256200-G	0.872428	1E-25		0.0583104	[0.047-0.069] unit increase	NR [11722792] (imputed)	N
931	chr19	45415934	45415935	rs7256200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs7256200-G	0.872428	2E-24		0.0577207	[0.047-0.069] unit increase	NR [11722792] (imputed)	N
931	chr19	45415934	45415935	rs7256200	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs7256200-G	0.872428	4E-10		0.0365441	[0.025-0.048] unit increase	NR [11722792] (imputed)	N
931	chr19	45415934	45415935	rs7256200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.32		rs7256200-T	NR	2E-10		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
931	chr19	45415934	45415935	rs7256200	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE, APOC1	rs7256200-T	0.17	1E-19		0.15	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45416098	45416099	rs72654437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs72654437-A	NR	6E-12		0.0498	[0.035-0.064] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416098	45416099	rs72654437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs72654437-A	NR	3E-18		0.0634	[0.049-0.078] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416098	45416099	rs72654437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs72654437-A	NR	1E-20		0.0677	[0.053-0.082] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs483082-G	0.763461	1E-52		0.0720203	[0.063-0.081] unit decrease	NR [11722792] (imputed)	N
931	chr19	45416177	45416178	rs483082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs483082-G	0.763461	4E-31		0.0551132	[0.046-0.064] unit decrease	NR [11722792] (imputed)	N
931	chr19	45416177	45416178	rs483082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs483082-G	0.763461	2E-23		0.0466782	[0.037-0.056] unit decrease	NR [11722792] (imputed)	N
931	chr19	45416177	45416178	rs483082	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs483082-G	0.763461	3E-23		0.0463565	[0.037-0.056] unit decrease	NR [11722792] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I11	5,363 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	2E-91		0.450879	[0.41-0.49] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,366 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	2E-156		0.580987	[0.54-0.62] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG5	5,361 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	5E-43		0.307765	[0.26-0.35] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	6E-38		0.29249	[0.25-0.34] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HLA-DRB3	5,351 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	5E-34		0.260342	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HDAC8	5,352 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	3E-26		0.221313	[0.18-0.26] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBQ1	5,361 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	8E-162		0.576882	[0.54-0.62] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GGT2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	2E-113		0.500208	[0.46-0.54] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM159B	5,365 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	7E-129		0.531785	[0.49-0.57] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CUZD1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	6E-261		0.721395	[0.68-0.76] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRYZL1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	4E-89		0.4428	[0.4-0.49] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARFGAP1	5,356 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	2E-25		0.22885	[0.19-0.27] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,356 Icelandic ancestry individuals	NA	19q13.32		rs483082-T	0.2146	1E-100		0.456005	[0.41-0.5] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	19q13.32		rs483082-T	0.244437	3E-10	meal response (conditional)	0.251112	[0.17-0.33] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial polyunsaturated fatty acids	4,348 individuals	NA	19q13.32		rs483082-T	0.243949	3E-9	meal response (conditional)	0.237711	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-6 fatty acids	4,348 individuals	NA	19q13.32		rs483082-T	0.243949	1E-10	meal response (conditional)	0.257838	[0.18-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial linoleic acid (18:2)	4,348 individuals	NA	19q13.32		rs483082-T	0.243949	2E-9	meal response (conditional)	0.241584	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large VLDL	4,348 individuals	NA	19q13.32		rs483082-T	0.246200619	1E-8		0.144146	[0.094-0.194] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial apolipoprotein B	4,348 individuals	NA	19q13.32		rs483082-T	0.244495	7E-9	meal response (conditional)	0.230723	[0.15-0.31] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very small VLDL	4,734 individuals	NA	19q13.32		rs483082-T	0.244656	1E-8	meal response (conditional)	0.217714	[0.14-0.29] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large VLDL	4,734 individuals	NA	19q13.32		rs483082-T	0.248956987	3E-8		0.141365	[0.091-0.191] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting polyunsaturated fatty acids	4,734 individuals	NA	19q13.32		rs483082-T	0.244384	5E-14	meal response (conditional)	0.287426	[0.21-0.36] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting linoleic acid (18:2)	4,734 individuals	NA	19q13.32		rs483082-T	0.244384	5E-16	meal response (conditional)	0.309285	[0.23-0.38] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	19q13.32		rs483082-T	0.244656	3E-13	meal response (conditional)	0.277668	[0.2-0.35] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large VLDL	4,734 individuals	NA	19q13.32		rs483082-T	0.248956987	3E-8		0.142256	[0.092-0.192] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting apolipoprotein B	4,734 individuals	NA	19q13.32		rs483082-T	0.244662	2E-12	meal response (conditional)	0.26797	[0.19-0.34] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	1E-11		0.113594	[0.081-0.146] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	3E-10		0.109132	[0.075-0.143] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	3E-11		0.0915741	[0.065-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(34:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19q13.32		rs483082-A	NR	2E-11		0.086	[0.061-0.111] unit increase	Illumina [6720657] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(39:1)_[M+H]1+/Phosphatidylethanolamine-P(39:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	19q13.32		rs483082-G	NR	2E-11		0.0477	[0.034-0.062] unit decrease	Illumina [6720657] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:6_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	6E-12		0.0807634	[0.058-0.104] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	6E-16		0.0786293	[0.06-0.098] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	4E-10		0.0791701	[0.054-0.104] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs483082-T	NR	4E-10		0.0784156	[0.054-0.103] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416177	45416178	rs483082	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	19q13.32		rs483082-T	NR	8E-10		7.164	mg/dl increase	NR [5712318]	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	2E-219		0.0934	[0.088-0.099] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	2E-21		0.0282	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	7E-15		0.0242	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	2E-78		0.0555	[0.05-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	6E-46		0.0473	[0.041-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	8E-21		0.029	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	3E-579		0.152	[0.15-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	1E-47		0.043	[0.037-0.049] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	6E-125		0.0706	[0.065-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	5E-19		0.0277	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs483082-T	NR	1E-19		0.0269	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOE, APOC1	rs483082-?		1E-85		0.0948	[0.085-0.104] unit decrease	Illumina [31500000] (imputed)	N
931	chr19	45416177	45416178	rs483082	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.32	APOC1	rs483082-G	0.764648	1E-292		0.0858847	[0.081-0.09] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45416177	45416178	rs483082	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19q13.32	RELB	rs483082-?	NR	1E-195		0.0919	[0.086-0.097] unit increase	Affymetrix [5701386] (imputed)	N
931	chr19	45416177	45416178	rs483082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.32	NR	rs483082-T	0.23680500000000004	2E-21		0.00934497	[0.0074-0.0113] unit increase	Affymetrix [16582909] (imputed)	N
931	chr19	45416177	45416178	rs483082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.32	NR	rs483082-T	0.23680500000000004	1E-23		0.010976	[0.0088-0.0131] unit increase	Affymetrix [16582965] (imputed)	N
931	chr19	45416177	45416178	rs483082	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	19q13.32	APOC1	rs483082-T	0.238624	2E-32		0.0899299	[0.075-0.105] unit increase	Affymetrix [9463307] (imputed)	N
931	chr19	45416177	45416178	rs483082	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19q13.32	APOE	rs483082-T	0.169	3E-10		0.0706	[0.049-0.093] unit increase	Affymetrix [at least 805769] (imputed)	N
931	chr19	45416177	45416178	rs483082	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs483082-?	0.738441	1E-62		2.6436493		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45416177	45416178	rs483082	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs483082-?	0.734105	1E-37	(females)	2.6149259		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45416177	45416178	rs483082	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE, APOC1	rs483082-T	0.29	1E-13		0.11	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45416177	45416178	rs483082	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs483082-T	0.231	4E-21	(Glutathione S-transferase Mu 1, GSTM1.7239.9.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45416177	45416178	rs483082	28183528	Jun GR	2017-02-06	Alzheimers Dement	Transethnic genome-wide scan identifies novel Alzheimer's disease loci.	Alzheimer's disease	13,100 European ancestry cases, 13,220 European ancestry controls, 1,472 African American cases, 3,511 African American controls, 951 Japanese ancestry cases, 894 Japanese ancestry controls, 51 Israeli-Arab ancestry cases, 64 Israeli-Arab ancestry controls	5,813 European ancestry cases, 20,474 European ancestry controls	19q13.32	NR	rs483082-T	NR	1E-15	(Japanese)	2.8	[2.17-3.61]	NR [NR]	N
931	chr19	45416290	45416291	rs59325138	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs59325138-?	NR	4E-11		0.057	[0.039-0.075] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45416290	45416291	rs59325138	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs59325138-?	NR	9E-15		0.068	[0.05-0.086] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45416290	45416291	rs59325138	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs59325138-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	7E-11		0.0929385	[0.065-0.121] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	4E-10		0.0953477	[0.065-0.125] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+OAc]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	2E-10		0.0580251	[0.04-0.076] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	7E-13		0.106583	[0.077-0.136] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	1E-10		0.0919262	[0.064-0.12] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	7E-12		0.082914	[0.059-0.107] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	3E-11		0.0812079	[0.057-0.105] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_36:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs584007-A	NR	1E-10		0.0763333	[0.053-0.1] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	7E-193		0.0777	[0.073-0.083] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	2E-64		0.0445	[0.039-0.05] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	6E-54		0.0407	[0.036-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	2E-38		0.0341	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	1E-17		0.023	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	4E-258		0.0901	[0.085-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	1E-14		0.0203	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	2E-25		0.0275	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs584007-G	NR	3E-26		0.0292	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45416477	45416478	rs584007	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	19q13.32	NECTIN2	rs584007-?	NR	1E-19		0.02548	[0.02-0.031] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45416477	45416478	rs584007	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs584007-?	NR	3E-14		1.4945852		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45416477	45416478	rs584007	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs584007-?	NR	2E-9	(females)	1.5096664		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAQ	5,360 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	6E-37		0.285648	[0.24-0.33] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB14	5,348 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	6E-13		0.151554	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NEFL	5,354 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	9E-154		0.543857	[0.5-0.58] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFIT2	5,353 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	9E-47		0.314231	[0.27-0.36] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GSTM1	5,355 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	2E-35		0.273402	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1orf56	5,362 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	7E-101		0.469649	[0.43-0.51] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM11	5,352 Icelandic ancestry individuals	NA	19q13.32		rs438811-T	0.2146	1E-16		0.180094	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very small VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244729929	2E-10		0.159083	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	1E-8		0.142394	[0.093-0.191] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small HDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244428275	8E-9		0.144653	[0.096-0.194] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	4E-8		0.137505	[0.088-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	1E-9		0.153286	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	2E-8		0.140017	[0.091-0.189] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	2E-8		0.139841	[0.091-0.189] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	7E-10		0.155635	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.246502856	3E-8		0.141645	[0.092-0.191] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	2E-10		0.160921	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	6E-10		0.156198	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium VLDL particle concentration	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	3E-8		0.139359	[0.09-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large VLDL particle concentration	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	8E-10		0.155178	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244788638	3E-8		0.139192	[0.09-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	5E-10		0.1573	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large VLDL	4,348 individuals	NA	19q13.32		rs438811-T	0.244273129	6E-11		0.165304	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.244930262	3E-11		0.159502	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.244660673	6E-10		0.149059	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small HDL	4,734 individuals	NA	19q13.32		rs438811-T	0.244438492	5E-9		0.14113	[0.094-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.244822199	3E-9		0.142857	[0.096-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	2E-8		0.138407	[0.09-0.186] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.244932404	2E-9		0.144379	[0.097-0.191] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	1E-8		0.138815	[0.091-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	1E-8		0.140132	[0.092-0.188] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.249292588	3E-8		0.141628	[0.091-0.192] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	2E-8		0.138021	[0.09-0.186] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large VLDL particle concentration	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	1E-8		0.138946	[0.091-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	1E-8		0.139165	[0.091-0.187] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large VLDL	4,734 individuals	NA	19q13.32		rs438811-T	0.245814377	6E-9		0.14265	[0.095-0.191] mmol/l increase	Illumina [7701709] (imputed)	N
931	chr19	45416740	45416741	rs438811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.32		rs438811-T	NR	1E-8		0.0146	[0.0095-0.0197] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
931	chr19	45416740	45416741	rs438811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.32	APOC1	rs438811-T	0.235815	7E-26		0.027981386	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45416740	45416741	rs438811	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Fasting triglyceride levels	5,630 individuals	NA	19q13.32	APOE	rs438811-T	0.25	7E-13		0.15	[0.11-0.19] unit increase	Illumina [NR] (imputed)	N
931	chr19	45416740	45416741	rs438811	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	APOC1	rs438811-T	NR	6E-16		0.010289	[0.0078-0.0128] unit decrease	NR [16367095] (imputed)	N
931	chr19	45416740	45416741	rs438811	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs438811-?	NR	7E-8		2.016171	[1.28-2.75] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45416740	45416741	rs438811	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOE, APOC1	rs438811-T	0.3	5E-14		0.11	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45416740	45416741	rs438811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs438811-T	0.232	9E-875	(Protein S100-A13, S100A13.7223.60.3)	1.24	[1.2-1.28] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45416740	45416741	rs438811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs438811-T	0.232	8E-34	(Protein MENT, MENT.5744.12.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45416740	45416741	rs438811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs438811-T	0.232	4E-230	(CUB and zona pellucida-like domain-containing protein 1, CUZD1.7943.16.3)	0.82	[0.76-0.88] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45416740	45416741	rs438811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs438811-T	0.232	2E-20	(TOM1-like protein 1, TOM1L1.13652.2.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45416740	45416741	rs438811	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1	rs438811-T	0.232	2E-15	(Beta-1,3-N-acetylglucosaminyltransferase radical fringe, RFNG.7203.125.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	NR	3E-75		0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.883	2E-7	(East Asian)	0.132	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.762	1E-69	(EA)	0.091	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	NR	5E-9		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.883	1E-7	(East Asian)	0.146	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.762	1E-11	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	NR	3E-42		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.883	9E-6	(East Asian)	0.123	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.762	6E-45	(EA)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	NR	3E-6		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs438811-C	0.762	3E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45416740	45416741	rs438811	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	19q13.32	APOE	rs438811-T	0.24	9E-37		0.096	[0.08-0.112] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
931	chr19	45416830	45416831	rs390082	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs390082-?	NR	1E-41		0.164	[0.14-0.19] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45416830	45416831	rs390082	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	19q13.32	NR	rs390082-?	NR	3E-29		0.09747	[0.08-0.114] unit increase novel	Illumina [6108953] (imputed)	N
931	chr19	45417199	45417200	rs72654445	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs72654445-G	0.985964	3E-9		0.110792	[0.074-0.147] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34954997-C	0.763301	1E-24		0.0478545	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34954997-C	0.763301	9E-25		0.0481559	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19q13.32		rs34954997-C	0.763301	2E-30		0.0539297	[0.045-0.063] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34954997-C	0.763301	3E-21		0.0444678	[0.035-0.054] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs34954997-C	0.763301	3E-34		0.0555055	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
931	chr19	45417638	45417638	rs34954997	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19q13.32	NR	rs34954997-C	0.76373	5E-9		0.0169766	[0.011-0.023] unit increase	Affymetrix [16585745] (imputed)	N
931	chr19	45417638	45417638	rs34954997	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs34954997-CTTCG	0.23	3E-621	(Tubulin-specific chaperone A, TBCA.12501.10.3)	1.15	[1.11-1.19] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-14		0.110942	[0.082-0.14] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	9E-28		0.162813	[0.13-0.19] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-20		0.138726	[0.11-0.17] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	9E-20		0.132734	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-16		0.122913	[0.093-0.153] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-18		0.129967	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-19		0.132172	[0.1-0.16] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-31		0.181017	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-23		0.155323	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-28		0.169471	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-28		0.169303	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-20		0.1388	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-12		0.103999	[0.074-0.134] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-14		0.112473	[0.083-0.142] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-20		0.143393	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-13		0.11053	[0.081-0.14] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-13		0.111147	[0.081-0.141] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-30		0.1732	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-27		0.158476	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-62		0.247908	[0.22-0.28] unit increase	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-22		0.145287	[0.12-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-31		0.179226	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-27		0.16492	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-31		0.179162	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-18		0.129517	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-28		0.169697	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-24		0.148636	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-34		0.177926	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	7E-20		0.131279	[0.1-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-37		0.197395	[0.17-0.23] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	8E-34		0.18393	[0.15-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-36		0.193145	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-22		0.144062	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-20		0.142262	[0.11-0.17] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-26		0.164429	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	5E-23		0.152832	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-21		0.146435	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-29		0.172479	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-12		0.102224	[0.074-0.131] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	2E-13		0.110323	[0.081-0.14] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	9E-22		0.148489	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-28		0.168023	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	8E-25		0.158705	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	8E-23		0.146739	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	7E-13		0.104782	[0.076-0.133] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	1E-26		0.160023	[0.13-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-18		0.126671	[0.098-0.155] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	3E-24		0.152642	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-17		0.126396	[0.097-0.156] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-29		0.172802	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-14		0.116523	[0.086-0.147] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	4E-22		0.149977	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	8E-30		0.173421	[0.14-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	8E-23		0.146849	[0.12-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs12691088-G	0.979087	6E-21		0.144994	[0.11-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs12691088-?	NR	1E-300		1.18305	unit increase	NR [10687077] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	7E-89		0.1682	[0.15-0.18] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	3E-137		0.2101	[0.19-0.23] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	1E-23		0.0881	[0.071-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	8E-145		0.2159	[0.2-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	5E-12		0.0584	[0.042-0.075] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	1E-219		0.2668	[0.25-0.28] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	6E-29		0.0984	[0.081-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs12691088-A	NR	2E-9		0.0508	[0.034-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45418485	45418486	rs12691088	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	APOC1	rs12691088-G	0.979089	2E-224		0.246284	[0.23-0.26] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45418789	45418790	rs5117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5117-T	0.764388	2E-54		0.0737341	[0.064-0.083] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418789	45418790	rs5117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5117-T	0.764388	1E-51		0.0718148	[0.063-0.081] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418789	45418790	rs5117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5117-T	0.764388	3E-38		0.0608361	[0.052-0.07] unit decrease	NR [11722792] (imputed)	N
931	chr19	45418789	45418790	rs5117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TOM1L1	5,340 Icelandic ancestry individuals	NA	19q13.32		rs5117-C	0.2146	1E-24		0.212414	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45418789	45418790	rs5117	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GAL3ST2	5,344 Icelandic ancestry individuals	NA	19q13.32		rs5117-C	0.2146	3E-13		0.15912	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45418789	45418790	rs5117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.32		rs5117-C	NR	7E-275		0.0892	[0.084-0.094] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
931	chr19	45418789	45418790	rs5117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.32	APOC1	rs5117-C	NR	1E-14		0.0257134	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45418789	45418790	rs5117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.32	APOC1	rs5117-C	NR	4E-14		0.0251974	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
931	chr19	45418789	45418790	rs5117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	19q13.32	APOC1	rs5117-C	NR	2E-8		0.0192952	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
931	chr19	45418789	45418790	rs5117	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA	19q13.32	APOC1	rs5117-C	0.41	9E-18		0.18	[0.14-0.23] unit increase	Illumina [1679420] (imputed)	N
931	chr19	45418789	45418790	rs5117	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	19q13.32	APOE	rs5117-C	0.24	4E-11		0.15	[0.11-0.19] unit increase	Illumina [NR] (imputed)	N
931	chr19	45418789	45418790	rs5117	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.32	NR	rs5117-C	0.23545899999999997	3E-15		0.0107889	[0.0079-0.0137] unit increase	Affymetrix [16585854] (imputed)	N
931	chr19	45418789	45418790	rs5117	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.32	NR	rs5117-C	0.23545899999999997	1E-14		0.0124392	[0.0091-0.0157] unit increase	Affymetrix [16585866] (imputed)	N
931	chr19	45418789	45418790	rs5117	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	19q13.32	NECTIN2	rs5117-?	NR	6E-45		0.03706	[0.031-0.043] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
931	chr19	45418789	45418790	rs5117	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Lobar intracerebral hemorrhage	755 European ancestry cases, 1,711 European ancestry controls	NA	19q13.32	APOE	rs5117-?	NR	6E-10		1.65		Affymetrix, Illumina [39235000] (imputed)	N
931	chr19	45418789	45418790	rs5117	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOC1	rs5117-C	0.28	3E-13		0.1	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45418789	45418790	rs5117	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19q13.32	NR	rs5117-T	0.7666	3E-20		0.0216	[0.017-0.026] unit increase	NR [~ 27400000] (imputed)	N
931	chr19	45418960	45418961	rs3826688	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Apo C_I plasma levels	400 French ancestry individuals	NA	19q13.32		rs3826688-C	NR	2E-9		0.078	[0.053-0.103] ng/mL decrease	Illumina [5201092] (imputed)	N
931	chr19	45420081	45420082	rs73052335	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	19q13.32	APOC1	rs73052335-C	0.1	1E-13		1.24	[1.17-1.32]	Affymetrix [7975321]	N
931	chr19	45420342	45420343	rs389261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs389261-A	NR	1E-11		0.1572	[0.11-0.2] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45420342	45420343	rs389261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs389261-A	NR	1E-15		0.1866	[0.14-0.23] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45421099	45421100	rs3925681	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs3925681-?	NR	3E-90				Affymetrix [7795605] (imputed)	N
931	chr19	45421099	45421100	rs3925681	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs3925681-?	NR	7E-162				Affymetrix [7795605] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	1E-18		0.170659	[0.13-0.21] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	1E-15		0.153111	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	1E-16		0.158976	[0.12-0.2] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	2E-12		0.134217	[0.097-0.172] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	3E-16		0.153412	[0.12-0.19] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421218	45421218	rs374095935	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs374095935-G	0.988246	5E-10		0.119864	[0.082-0.158] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421253	45421254	rs12721046	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOC1	rs12721046-A	0.19	1E-14		0.13	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45421649	45421650	rs140480140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs140480140-G	0.971798	2E-31		0.136312	[0.11-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421649	45421650	rs140480140	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	19q13.32	NR	rs140480140-G	0.97168	4E-323		0.216585	[0.21-0.23] unit decrease	Affymetrix [15000001]	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs484195-A	0.384474	7E-12		0.0289156	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs484195-A	0.384474	4E-56		0.0655842	[0.057-0.074] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs484195-A	0.384488	3E-11		0.0275591	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs484195-A	0.384488	6E-15		0.0323138	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs484195-A	0.384474	1E-54		0.0645622	[0.056-0.073] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs484195-A	0.384474	4E-55		0.0647882	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs484195-A	0.384474	1E-14		0.0331622	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
931	chr19	45421876	45421877	rs484195	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.32	APOC1	rs484195-A	0.38	3E-67		17.3	z-score increase	Affymetrix [4311822] (imputed)	N
931	chr19	45421972	45421973	rs12721052	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs12721052-A	0.336	7E-36	(Hemoglobin subunit theta-1, HBQ1.7965.25.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45421972	45421973	rs12721052	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs12721052-A	0.336	5E-28	(Quinone oxidoreductase-like protein 1, CRYZL1.9207.60.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45422159	45422160	rs12721051	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs12721051-C	0.810914	2E-26		0.055239	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422159	45422160	rs12721051	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs12721051-C	0.810905	2E-39		0.0683321	[0.058-0.079] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422159	45422160	rs12721051	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Middle temporal cortical thickness	2,643 Korean ancestry individuals	NA	19q13.32		rs12721051-G	0.12	5E-8		0.22	[0.14-0.3] unit decrease	NR [3930740] (imputed)	N
931	chr19	45422159	45422160	rs12721051	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small HDL particle concentration	4,348 individuals	NA	19q13.32		rs12721051-G	0.199506688	2E-8		0.148894	[0.097-0.201] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45422159	45422160	rs12721051	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium HDL	4,348 individuals	NA	19q13.32		rs12721051-G	0.19957695	3E-9		0.158792	[0.11-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45422159	45422160	rs12721051	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small HDL	4,348 individuals	NA	19q13.32		rs12721051-G	0.199506688	7E-14		0.199589	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45422159	45422160	rs12721051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.32	APOC1	rs12721051-G	0.188801	5E-24		0.0287381	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45422159	45422160	rs12721051	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOC1	rs12721051-G	0.24	3E-21		0.14	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45422159	45422160	rs12721051	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.32	APOC1	rs12721051-C	0.8427	1E-179		0.1061	[0.099-0.113] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
931	chr19	45422159	45422160	rs12721051	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	19q13.32	APOE, APOC1, PVRL2	rs12721051-G	0.18	5E-11		0.2874	[0.2-0.37] unit decrease	Affymetrix [19941912] (imputed)	N
931	chr19	45422560	45422561	rs1064725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs1064725-G	NR	3E-22		0.0605	[0.048-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422560	45422561	rs1064725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs1064725-G	NR	4E-14		0.0472	[0.035-0.059] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422586	45422587	rs12721054	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs12721054-?	NR	7E-39		0.241	[0.21-0.28] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422586	45422587	rs12721054	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs12721054-?	NR	5E-23		0.194	[0.15-0.23] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422586	45422587	rs12721054	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs12721054-?	NR	3E-17		0.172	[0.13-0.21] mg/dL decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422586	45422587	rs12721054	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Triglyceride levels	14,126 African ancestry individuals	NA	19q13.32		rs12721054-A	0.878	7E-25		0.183806	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
931	chr19	45422586	45422587	rs12721054	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	NR	rs12721054-?	NR	6E-39		0.1222335	[0.1-0.14] unit decrease	Illumina [31978265] (imputed)	N
931	chr19	45422586	45422587	rs12721054	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	19q13.32	NR	rs12721054-?	NR	5E-23		8.566244	[6.87-10.26] unit decrease	Illumina [32003504] (imputed)	N
931	chr19	45422586	45422587	rs12721054	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs12721054-?	NR	3E-17		6.742064	[5.18-8.31] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45422586	45422587	rs12721054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721054-A	NR	3E-10		0.205	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422586	45422587	rs12721054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721054-A	0.89	6E-10	(AA)	0.231	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422586	45422587	rs12721054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721054-A	NR	2E-7		0.211	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422586	45422587	rs12721054	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721054-A	0.89	2E-6	(AA)	0.197	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422586	45422587	rs12721054	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	19q13.32	APOC1	rs12721054-G	0.1137	3E-19	(AA)	0.101	[NR] unit decrease	Affymetrix [NR]	N
931	chr19	45422845	45422846	rs56131196	34785643	Park JY	2021-11-16	Transl Psychiatry	A missense variant in SHARPIN mediates Alzheimer's disease-specific brain damages.	Inferior parietal cortical thickness	2,643 Korean ancestry individuals	NA	19q13.32		rs56131196-A	0.12	5E-9		0.24	[0.16-0.32] unit decrease	NR [3930740] (imputed)	N
931	chr19	45422845	45422846	rs56131196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-A	0.173481	7E-25				Affymetrix, Illumina [21126107] (imputed)	N
931	chr19	45422845	45422846	rs56131196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.32	NR	rs56131196-A	0.188642	4E-27		0.027717	[0.023-0.033] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
931	chr19	45422845	45422846	rs56131196	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	19q13.32	APOC1	rs56131196-A	0.16	2E-14		1.09	[1.07-1.11]	Illumina [5167567] (imputed)	N
931	chr19	45422845	45422846	rs56131196	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs56131196-?	NR	2E-7		2.337203	[1.45-3.22] unit increase	Illumina [31808917] (imputed)	N
931	chr19	45422845	45422846	rs56131196	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs56131196-?	NR	6E-77		3.2625577		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422845	45422846	rs56131196	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs56131196-?	NR	4E-48	(females)	3.2052002		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422845	45422846	rs56131196	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs56131196-?	NR	3E-24	(males)	3.3117516		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422845	45422846	rs56131196	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOC1	rs56131196-A	0.25	1E-20		0.14	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	NR	8E-35		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.897	3E-6	(East Asian)	0.118	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.835	2E-32	(EA)	0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	NR	2E-120		0.137	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.897	1E-7	(East Asian)	0.147	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.883	5E-6	(Hispanic)	0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.835	6E-114	(EA)	0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	NR	6E-163		0.163	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.897	1E-6	(East Asian)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.883	1E-6	(Hispanic)	0.115	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.835	2E-157	(EA)	0.174	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	NR	8E-53		0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs56131196-G	0.835	1E-49	(EA)	0.078	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422845	45422846	rs56131196	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	19q13.32	Intergenic	rs56131196-A	NR	3E-24	(within families)	10.157	unit increase	Affymetrix [up to 15107142] (imputed)	N
931	chr19	45422845	45422846	rs56131196	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	19q13.32	APOC1	rs56131196-A	0.16	4E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [8600000] (imputed)	N
931	chr19	45422845	45422846	rs56131196	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	19q13.32	APOC1	rs56131196-A	0.29	4E-12	(Cortical Ab)			Illumina [6108668] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	6E-20		0.046655	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	2E-15		0.0403125	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	8E-23		0.0499681	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	3E-39		0.0675378	[0.057-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810362	5E-39		0.0678677	[0.058-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810362	1E-24		0.0531216	[0.043-0.063] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	4E-22		0.0491418	[0.039-0.059] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	5E-27		0.0548317	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	2E-31		0.0593167	[0.049-0.069] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	4E-24		0.0513973	[0.041-0.061] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	1E-41		0.0693932	[0.059-0.079] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs4420638-A	0.810353	6E-36		0.0643402	[0.054-0.074] unit decrease	NR [11722792] (imputed)	N
931	chr19	45422945	45422946	rs4420638	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small HDL	4,348 individuals	NA	19q13.32		rs4420638-G	0.199795434	3E-8		0.148467	[0.096-0.201] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45422945	45422946	rs4420638	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium HDL	4,734 individuals	NA	19q13.32		rs4420638-G	0.198783807	4E-8		0.140446	[0.09-0.191] mmol/l decrease	Illumina [7701709] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-69		0.0534	[0.048-0.059] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-905		0.1944	[0.19-0.2] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-11		0.0214	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-35		0.0376	[0.032-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	1E-1192		0.223	[0.22-0.23] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-103		0.0684	[0.062-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	6E-11		0.0203	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	4E-20		0.0278	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-15		0.0261	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-22		0.0296	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-20		0.0282	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	3E-1177		0.2217	[0.22-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	7E-71		0.0541	[0.048-0.06] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	1E-1788		0.2726	[0.27-0.28] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-194		0.0945	[0.088-0.101] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-G	NR	2E-31		0.0354	[0.03-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs4420638-A	0.8111	1E-11		0.12685694	[0.091-0.163] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
931	chr19	45422945	45422946	rs4420638	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	19q13.32		rs4420638-?	NR	9E-12				NR [7857346] (imputed)	N
931	chr19	45422945	45422946	rs4420638	31760383	Guo Y	2019-11-23	Aging (Albany NY)	Genome-wide association study of hippocampal atrophy rate in non-demented elders.	Hippocampal atrophy rate	602 European ancestry elderly individuals	NA	19q13.32	APOC1, TOMM40	rs4420638-G	0.151	9E-9		0.005454	NR unit decrease	Illumina [695203]	N
931	chr19	45422945	45422946	rs4420638	31755389	Li J	2019-11-21	Curr Alzheimer Res	Genome-wide Network-assisted Association and Enrichment Study of Amyloid Imaging Phenotype in Alzheimer's Disease.	Cerebral cortex AV-45 amyloid PET measurement	155 cognitively normal individuals, 72 significant memory concern individuals, 278 with early mild cognitive impairment individuals, 144 late mild cognitive impairment individuals, 125 Alzheimer's disease cases.	NA	19q13.32	APOC1	rs4420638-?	NR	9E-8				Illumina [563980]	N
931	chr19	45422945	45422946	rs4420638	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	19q13.32		rs4420638-G	0.16	3E-30		5.01	[4.15-5.87] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		19q13.32		rs4420638-G	0.16	5E-35		5.02	[4.22-5.82] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	19q13.32		rs4420638-G	0.16	8E-8		0.97	[0.62-1.32] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	19q13.32	APOE	rs4420638-G	NR	6E-8		0.01933	[0.012-0.026] unit decrease	Illumina [541493]	N
931	chr19	45422945	45422946	rs4420638	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs4420638-?	NR	6E-7		2.27594	[1.38-3.17] unit increase	Illumina [31808917] (imputed)	N
931	chr19	45422945	45422946	rs4420638	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	19q13.32	NR	rs4420638-?	NR	1E-30		0.1384595	[0.11-0.16] unit decrease	Illumina [30861016] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19q13.32		rs4420638-A	0.8286	2E-82	(EA)	5.5005	[4.94-6.06] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19q13.32		rs4420638-A	0.827	2E-16	(EA)	0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs4420638-?	NR	9E-77		3.2591338		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs4420638-?	NR	8E-48	(females)	3.1868043		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	19q13.32	APOC1	rs4420638-?	NR	2E-24	(males)	3.3425252		Affymetrix, Illumina [2928658] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.81	2E-19		0.022	[0.017-0.027] unit increase	Affymetrix [2446094] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.81	5E-8				Affymetrix [2446094] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	19q13.32	APOC1	rs4420638-A	0.18	1E-305		0.229	[0.22-0.24] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	19q13.32	APOC1	rs4420638-G	0.25	7E-21		0.14	unit increase	Illumina [at least 7000000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOC1	rs4420638-?		3E-11		2.768712	[NR] unit decrease	Illumina [575353]	N
931	chr19	45422945	45422946	rs4420638	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOC1	rs4420638-?		7E-29		0.1276141	[NR] unit decrease	Illumina [575353]	N
931	chr19	45422945	45422946	rs4420638	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOC1	rs4420638-?		3E-27		0.01336468	[NR] unit decrease	Illumina [575353]	N
931	chr19	45422945	45422946	rs4420638	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	19q13.32	APOC1	rs4420638-?		1E-20		274.6386	[NR] unit increase	Illumina [575353]	N
931	chr19	45422945	45422946	rs4420638	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19q13.32	NR	rs4420638-A	0.8131	2E-34		0.0288	[0.024-0.034] unit increase	NR [~ 27400000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	NR	8E-35		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.897	5E-6	(East Asian)	0.115	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.832	2E-32	(EA)	0.068	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	NR	3E-120		0.136	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.897	2E-7	(East Asian)	0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.883	5E-6	(Hispanic)	0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.832	2E-113	(EA)	0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	NR	3E-162		0.161	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.897	2E-6	(East Asian)	0.132	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.883	1E-6	(Hispanic)	0.115	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.832	2E-156	(EA)	0.172	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	NR	2E-51		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs4420638-A	0.832	2E-48	(EA)	0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.32	APOC1	rs4420638-G	NR	2E-25		0.0512579	[0.041-0.061] unit decrease	Affymetrix [16832071] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19q13.32	APOE, APOC1	rs4420638-G	0.1978	9E-8		0.077	[0.05-0.104] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19q13.32	APOE, APOC1	rs4420638-G	0.1978	2E-7	(EA)	0.1028	[0.064-0.142] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOC1	rs4420638-?		4E-27				Illumina [563980]	N
931	chr19	45422945	45422946	rs4420638	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOC1	rs4420638-?		2E-13				Illumina [563980]	N
931	chr19	45422945	45422946	rs4420638	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid AB1-42 levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	19q13.32	APOC1	rs4420638-?		6E-42				Illumina [563980]	N
931	chr19	45422945	45422946	rs4420638	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs4420638-A	0.88	9E-17	(Asian initial, BMI unadjusted)	0.11	[0.085-0.135] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs4420638-A	0.814	6E-34	(Trans-ethnic initial)	0.0669	[0.054-0.08] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	19q13.32	APOE, APOC1, APOC2	rs4420638-A	0.89	5E-12	(BMI unadjusted)	0.109	[0.078-0.14] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.32	APOC1, CTB-129P6.7	rs4420638-G	0.1730382	3E-14	(EA, Small nuclear ribonucleoprotein F)	0.4345	[0.32-0.54] unit decrease	Affymetrix [509946]	N
931	chr19	45422945	45422946	rs4420638	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.32	APOC1, CTB-129P6.7	rs4420638-G	0.1730382	2E-13	(EA, Apolipoprotein E (isoform E2))	0.4193	[0.31-0.53] unit increase	Affymetrix [509946]	N
931	chr19	45422945	45422946	rs4420638	28046027	Kim T	2017-01-03	PLoS One	Genome-Wide Association Study Reveals Four Loci for Lipid Ratios in the Korean Population and the Constitutional Subgroup.	LDL cholesterol to HDL cholesterol ratio	5,292 Korean ancestry individuals	2,567 Korean ancestry individuals	19q13.32	APOC1	rs4420638-?	NR	8E-11		0.1525	[0.11-0.2] unit increase	Affymetrix [310746]	N
931	chr19	45422945	45422946	rs4420638	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19q13.32	APOC1	rs4420638-G	0.1883	4E-16		0.03814463	[0.029-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19q13.32	NR	rs4420638-?	NR	1E-22				Affymetrix [NR]	N
931	chr19	45422945	45422946	rs4420638	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	19q13.32	NR	rs4420638-?	NR	2E-25				Affymetrix [NR]	N
931	chr19	45422945	45422946	rs4420638	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19q13.32	NR	rs4420638-?		9E-9	(CRP)	0.383	[NR] unit decrease	Illumina [NR]	N
931	chr19	45422945	45422946	rs4420638	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	19q13.32	APOC1	rs4420638-A	NR	2E-171				NR [25015711] (imputed)	N
931	chr19	45422945	45422946	rs4420638	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	19q13.32	APOC1	rs4420638-A	NR	4E-249				NR [2501549] (imputed)	N
931	chr19	45422945	45422946	rs4420638	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	19q13.32	APOC1	rs4420638-A	NR	1E-283				NR [2501749] (imputed)	N
931	chr19	45422945	45422946	rs4420638	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	19q13.32	APOC1	rs4420638-A	NR	2E-164				NR [2501543] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	19q13.32	APOE	rs4420638-A	NR	2E-16	(between families)			Affymetrix [up to 15107142] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	19q13.32	APOC1, ZNF229, IGSF23, BCL3, PVRL2, CLPTM1, GEMIN7, EXOC3L2, KLC3, ZNF180, PVR, CBLC, TOMM40, RELB, PPP1R37, MARK4, ERCC1, CEACAM20, MIR4531, BCAM, APOE, CLASRP, BLOC1S3, CKM, CEACAM22P	rs4420638-A	0.82	2E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x age interaction	up to 112,279 European ancestry individuals aged <50, up to 197,610 European ancestry individuals aged >50	NA	19q13.32	APOC1, ZNF229, IGSF23, BCL3, PVRL2, CLPTM1, GEMIN7, EXOC3L2, KLC3, ZNF180, PVR, CBLC, TOMM40, RELB, PPP1R37, MARK4, ERCC1, CEACAM20, MIR4531, BCAM, APOE, CLASRP, BLOC1S3, CKM, CEACAM22P	rs4420638-A	0.82	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	19q13.32	APOC1, ZNF229, IGSF23, BCL3, PVRL2, CLPTM1, GEMIN7, EXOC3L2, KLC3, ZNF180, PVR, CBLC, TOMM40, RELB, PPP1R37, MARK4, ERCC1, CEACAM20, MIR4531, BCAM, APOE, CLASRP, BLOC1S3, CKM, CEACAM22P	rs4420638-A	0.82	9E-12		0.04	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q13.32	APOC1, ZNF229, IGSF23, BCL3, PVRL2, CLPTM1, GEMIN7, EXOC3L2, KLC3, ZNF180, PVR, CBLC, TOMM40, RELB, PPP1R37, MARK4, ERCC1, CEACAM20, MIR4531, BCAM, APOE, CLASRP, BLOC1S3, CKM, CEACAM22P	rs4420638-A	0.82	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	26421299	Li J	2015-09-03	Biomed Res Int	Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort.	Cingulate cortical amyloid beta load	215 European ancestry early mild cognitive impairment cases, 152 European ancestry late mild cognitive impairment cases, 45 European ancestry Alzheimer disease cases, 190  European ancestry controls	NA	19q13.32	APOC1	rs4420638-?	NR	5E-21				Illumina [582718]	N
931	chr19	45422945	45422946	rs4420638	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	19q13.32	APOE, APOC1	rs4420638-G	0.166036	7E-11		1.1	[1.07- 1.13]	Affymetrix, Illumina [8600000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	APOC1, APOE	rs4420638-G	0.18	6E-13	(ALL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	APOC1, APOE	rs4420638-G	0.18	2E-12	(ALL-dr)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	APOC1, APOE	rs4420638-G	0.18	1E-16	(PAR-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	19q13.32	APOC1, APOE	rs4420638-G	0.18	1E-16	(PAR-dr)			Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (90 years and older)	5,406 European ancestry cases, 15,112 European ancestry controls	7,330 European ancestry cases, 61,156 European ancestry controls	19q13.32	APOE	rs4420638-?	0.798	3E-36		1.39	[1.32-1.47]	Illumina [2470825] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (85 years and older)	7,729 European ancestry cases, 16,121 European ancestry controls	13,060 European ancestry cases, 61,156 European ancestry controls	19q13.32	APOE	rs4420638-?	0.798	2E-26		1.22	[1.18-1.27]	Illumina [2480356] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	APOE	rs4420638-G	0.19	2E-178		0.225	[NR] unit increase	NR [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	APOE	rs4420638-G	0.19	2E-21		0.067	[NR] unit decrease	NR [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.32	APOE	rs4420638-G	0.19	1E-149		0.197	[NR] unit increase	NR [NR] (imputed)	N
931	chr19	45422945	45422946	rs4420638	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	19q13.32	APOC1	rs4420638-G	0.17	1E-14	(LDL-C)	0.25	unit increase	Affymetrix [390619]	N
931	chr19	45422945	45422946	rs4420638	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	19q13.32	APOE	rs4420638-A	0.83	2E-20		1.3	[1.24-1.36]	Affymetrix, Illumina [2442884] (imputed)	N
931	chr19	45422945	45422946	rs4420638	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	19q13.32	APOE, TOMM40, APOC1	rs4420638-?	NR	8E-149		3.45	[NR]	Illumina [2543888] (imputed)	N
931	chr19	45422945	45422946	rs4420638	22054870	De Jager PL	2011-11-03	Neurobiol Aging	A genome-wide scan for common variants affecting the rate of age-related cognitive decline.	Cognitive decline	749 European ancestry individuals	1,562 European ancestry individuals, 717 cases	19q13.32	APOE, TOMM40	rs4420638-?	NR	4E-27				Affymetrix [672266]	N
931	chr19	45422945	45422946	rs4420638	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	19q13.32	APOE, TOMM40, APOC1, PVRL2	rs4420638-?	NR	1E-12		2.2018	unit increase	Illumina [2543888] (imputed)	N
931	chr19	45422945	45422946	rs4420638	22003152	Grallert H	2011-10-14	Eur Heart J	Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.	Lipoprotein-associated phospholipase A2 activity and mass	12,126 European ancestry individuals, 1,538 individuals	NA	19q13.32	APOC1	rs4420638-A	0.84	5E-30	(Activity concentrations)	0.054	[0.044-0.064] unit decrease	Affymetrix, Illumina [2661766] (imputed)	N
931	chr19	45422945	45422946	rs4420638	21740922	Nebel A	2011-06-29	Mech Ageing Dev	A genome-wide association study confirms APOE as the major gene influencing survival in long-lived individuals.	Longevity	763 European ancestry individuals, 1,058 European ancestry individuals	754 European ancestry individuals, 860 European ancestry individuals	19q13.32	APOC1	rs4420638-?	0.81	2E-16				Affymetrix [664472]	N
931	chr19	45422945	45422946	rs4420638	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	19q13.32	APOC1	rs4420638-A	NR	9E-139		0.236	[0.22-0.26] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	21196492	Okada Y	2010-12-31	Hum Mol Genet	Genome-wide association study for C-reactive protein levels identified pleiotropic associations in the IL6 locus.	C-reactive protein	10,112 Japanese ancestry individuals	2,742 Japanese ancestry individuals	19q13.32	APOE-CI-CII cluster	rs4420638-A	0.90	3E-7		0.136	[0.09-0.19] unit increase	Illumina [477784]	N
931	chr19	45422945	45422946	rs4420638	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	19q13.32	APOC2, APOE, APOC4, APOC1	rs4420638-G	0.18	2E-40		0.06	[0.05-0.07] unit increase	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
931	chr19	45422945	45422946	rs4420638	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	19q13.32	APOC2, APOE, APOC1	rs4420638-G	0.17	9E-147		7.14	[6.57-7.71] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19q13.32	APOC2, APOE, APOC1	rs4420638-G	0.17	4E-21		1.06	[0.82-1.3] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19q13.32	APOC2, APOE, APOC1	rs4420638-G	0.17	5E-111		6.83	[6.2-7.46] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	20442857	Suchindran S	2010-04-29	PLoS Genet	Genome-wide association study of Lp-PLA(2) activity and mass in the Framingham Heart Study.	Lipoprotein-associated phospholipase A2 activity and mass	6,668 European ancestry individuals	NA	19q13.32	APOC1	rs4420638-G	0.16	6E-24	(activity)	8.0	[NR] nmol/ml/min increase	Affymetrix [360811]	N
931	chr19	45422945	45422946	rs4420638	19567438	Elliott P	2009-07-01	JAMA	Genetic Loci associated with C-reactive protein levels and risk of coronary heart disease.	C-reactive protein	17,967 European ancestry and Indian Asian ancestry individuals	13,615 European ancestry and Indian Asian ancestry Individuals	19q13.32	APOE, APOCII, APOC1	rs4420638-G	NR	5E-27		21.8	[18.1-25.3] % decrease	Affymetrix, Illumina, Perlegen [~ 1400000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	APOC2, APOE, APOC4, TOMM40, APOC1	rs4420638-G	0.21	5E-6	(TG)	0.22	[NR] mg/dL increase	Affymetrix [408775]	N
931	chr19	45422945	45422946	rs4420638	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	APOC2, APOE, APOC4, TOMM40, APOC1	rs4420638-G	0.21	3E-7	(TC)	0.28	[NR] mg/dL increase	Affymetrix [408775]	N
931	chr19	45422945	45422946	rs4420638	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	APOC2, APOE, APOC4, TOMM40, APOC1	rs4420638-G	0.21	2E-6	(CRP)	0.28	[NR] mg/L decrease	Affymetrix [408775]	N
931	chr19	45422945	45422946	rs4420638	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	19q13.32	APOC2, APOE, APOC4, APOC1	rs4420638-G	0.16	4E-27		0.29	[0.17-0.41] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	18802019	Burkhardt R	2008-09-18	Arterioscler Thromb Vasc Biol	Common SNPs in HMGCR in micronesians and whites associated with LDL-cholesterol levels affect alternative splicing of exon13.	LDL cholesterol	2,346 Micronesian ancestry individuals	NA	19q13.32	APOC2, APOE, APOC4, APOC1	rs4420638-?	NR	2E-7				Affymetrix [~ 500000]	N
931	chr19	45422945	45422946	rs4420638	18262040	Sandhu MS	2008-02-09	Lancet	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	19q13.32	APOC1	rs4420638-G	0.18	1E-20		0.06	[0.04-0.08] mmol/L increase	Affymetrix, Illumina [up to 461986]	N
931	chr19	45422945	45422946	rs4420638	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	19q13.32	APOC2, APOE, APOC4, APOC1	rs4420638-G	0.2	1E-60		0.19	[0.15-0.23] unit increase	Affymetrix [389878]	N
931	chr19	45422945	45422946	rs4420638	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	19q13.32	APOE, APOC4, APOC1	rs4420638-G	0.18	3E-43		6.61	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
931	chr19	45422945	45422946	rs4420638	17998437	Li H	2007-11-12	Arch Neurol	Candidate single-nucleotide polymorphisms from a genomewide association study of Alzheimer disease.	Alzheimer's disease	753 European ancestry cases, 736 European ancestry controls	418 European ancestry cases, 249 European ancestry controls	19q13.32	APOE, APOC1	rs4420638-?	NR	2E-44				Affymetrix [469438]	N
931	chr19	45422945	45422946	rs4420638	17975299	Webster JA	2007-11-01	Neurodegener Dis	Sorl1 as an Alzheimer's disease predisposition gene?	Alzheimer's disease	664 cases, 422 controls	NA	19q13.32	APOE	rs4420638-?	NR	1E-39				Affymetrix [~ 502627]	N
931	chr19	45422945	45422946	rs4420638	17474819	Coon KD	2007-04-01	J Clin Psychiatry	A high-density whole-genome association study reveals that APOE is the major susceptibility gene for sporadic late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	664 European ancestry cases, 422 European ancestry controls	NA	19q13.32	APOE	rs4420638-?	NR	1E-39		4.01	[NR]	Affymetrix [~ 502627]	N
931	chr19	45422945	45422946	rs4420638	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	LDL cholesterol levels	2,601 European ancestry type 2 diabetes cases and controls	NA	19q13.32	APOE	rs4420638-G	0.22	3E-13		2.1	(% variance) increase	Affymetrix [389878]	N
931	chr19	45423933	45423934	rs157591	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	19q13.32	APOE	rs157591-?		2E-25	(model 1)	1.93	[1.72-2.17]	Illumina [29610185] (imputed)	N
931	chr19	45423943	45423944	rs144311893	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	APOC1	rs144311893-C	0.977914	9E-34		0.0810821	[0.068-0.094] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45423943	45423944	rs144311893	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	APOC1	rs144311893-C	0.978012	1E-70		0.122774	[0.11-0.14] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45423943	45423944	rs144311893	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs144311893-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45424350	45424351	rs814573	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	19q13.32		rs814573-A	0.81369	2E-9		0.0323934	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
931	chr19	45424350	45424351	rs814573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	19q13.32		rs814573-T	NR	2E-12		0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
931	chr19	45424350	45424351	rs814573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs814573-T	0.198	5E-15	(Apolipoprotein E (isoform E2), APOE.5312.49.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45424350	45424351	rs814573	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOE	rs814573-T	0.198	1E-11	(C-reactive protein, CRP.4337.49.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs157594-T	0.383573	7E-15		0.0320972	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	8E-31		0.0480006	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	5E-25		0.0437974	[0.035-0.052] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	19q13.32		rs157594-T	0.38361	9E-43		0.0557647	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs157594-T	0.38361	2E-24		0.04297	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs157594-T	0.38361	3E-34		0.0513045	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	3E-14		0.0324854	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	1E-51		0.0635933	[0.055-0.072] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	2E-11		0.0291696	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	4E-39		0.0575524	[0.049-0.066] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	1E-63		0.0712617	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	2E-60		0.0693203	[0.061-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425174	45425175	rs157594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157594-T	0.383594	4E-12		0.0296995	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425177	45425178	rs190712692	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	19q13.32	APOC1, APOC1P1	rs190712692-?	NR	4E-11		0.192092	[0.14-0.25] unit decrease	Illumina [19707525] (imputed)	N
931	chr19	45425177	45425178	rs190712692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.32	NR	rs190712692-A	0.05356300000000003	9E-12		0.0173116	[0.012-0.023] unit increase	Affymetrix [16582621] (imputed)	N
931	chr19	45425177	45425178	rs190712692	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.32	NR	rs190712692-A	0.05356300000000003	1E-7		0.0139846	[0.0084-0.0195] unit increase	Affymetrix [16582614] (imputed)	N
931	chr19	45425177	45425178	rs190712692	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs190712692-G	0.94694	7E-86		0.0911409	[0.082-0.1] unit decrease	NR [NR]	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-95		0.0895009	[0.081-0.098] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	8E-24		0.0417647	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	2E-51		0.0631574	[0.055-0.071] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	4E-34		0.0502463	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	6E-81		0.0808777	[0.073-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	3E-80		0.0811882	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	1E-88		0.0859784	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	2E-60		0.0698992	[0.062-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.32		rs157595-A	0.382662	3E-14		0.030811	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs157595-A	0.382662	5E-64		0.0712123	[0.063-0.079] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	4E-31		0.047798	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs157595-A	0.38263	2E-39		0.0552978	[0.047-0.064] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	3E-86		0.0838036	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-90		0.0869311	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	2E-92		0.088247	[0.08-0.097] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	1E-92		0.0873397	[0.079-0.096] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs157595-A	0.382662	1E-61		0.0701629	[0.062-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19q13.32		rs157595-A	0.382662	4E-63		0.0714818	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	1E-72		0.0765391	[0.068-0.085] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-83		0.083645	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	3E-87		0.0858136	[0.077-0.094] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	8E-94		0.0883519	[0.08-0.097] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-78		0.0797113	[0.071-0.088] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	8E-79		0.0802143	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	8E-89		0.0863931	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	2E-62		0.0725233	[0.064-0.081] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	4E-90		0.086616	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-36		0.0525138	[0.044-0.061] unit increase	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	6E-59		0.0676715	[0.059-0.076] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	4E-83		0.0824794	[0.074-0.091] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-80		0.0819516	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	1E-62		0.0725636	[0.064-0.081] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	1E-91		0.088042	[0.08-0.097] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	7E-29		0.0460211	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	5E-64		0.0710096	[0.063-0.079] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs157595-A	0.382645	2E-82		0.083329	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45425459	45425460	rs157595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.32	APOC1P1	rs157595-A	0.383673	7E-17		0.019447101	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45425459	45425460	rs157595	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.32	NR	rs157595-G	0.614127	3E-14		0.015581	[0.012-0.02] unit decrease	Affymetrix [16668957] (imputed)	N
931	chr19	45425459	45425460	rs157595	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOC1P1, APOC2, APOC4, APOC4-APOC2, APOE, BCAM, BCL3, BLOC1S3, CBLC, CD3EAP, CKM, CLASRP, CLPTM1, ERCC1, ERCC2, EXOC3L2, FOSB, GEMIN7, KLC3, MARK4, MIR8085, NKPD1, OPA3, PPM1N, PPP1R13L, PPP1R37, PVRL2, RELB, RTN2, TOMM40, TRAPPC6A, VASP, ZNF296	rs157595-?		1E-97				NR [NR]	N
931	chr19	45425459	45425460	rs157595	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	19q13.32	APOE, APOC1	rs157595-A	0.39	5E-82		0.096	[0.086-0.106] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
931	chr19	45425459	45425460	rs157595	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs157595-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45425459	45425460	rs157595	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.32	APOC1, APOC1P1	rs157595-A	0.397	6E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	5E-11		0.210873	[0.15-0.27] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-13		0.231017	[0.17-0.29] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-10		0.206439	[0.14-0.27] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-11		0.21811	[0.15-0.28] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_47:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	5E-11		0.206629	[0.14-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-11		0.216208	[0.15-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	9E-11		0.168277	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_42:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-11		0.218503	[0.15-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_41:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-10		0.20287	[0.14-0.27] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-11		0.219018	[0.16-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	8E-12		0.217928	[0.16-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	3E-10		0.164161	[0.11-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-13		0.193094	[0.14-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-17		0.168124	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-11		0.136318	[0.096-0.176] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-11		0.173793	[0.12-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Hydroxycholesterol_[M+H-2H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	4E-20		0.198231	[0.16-0.24] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	5E-15		0.143845	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-10		0.161257	[0.11-0.21] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-10		0.154521	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_36:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	9E-11		0.153203	[0.11-0.2] unit increase	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_20:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	6E-20		0.20299	[0.16-0.25] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	7E-14		0.170531	[0.13-0.22] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	3E-25		0.234968	[0.19-0.28] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:1_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	1E-12		0.134939	[0.098-0.172] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_18:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	3E-17		0.158749	[0.12-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesteryl ester_16:0_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	2E-17		0.173643	[0.13-0.21] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Cholesterol_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs141622900-A	NR	5E-23		0.193384	[0.16-0.23] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	3E-124		0.1325	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	1E-1324		0.4322	[0.42-0.44] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	2E-2223		0.5573	[0.55-0.57] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	5E-69		0.1108	[0.098-0.123] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	3E-36		0.0734	[0.062-0.085] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	6E-25		0.0623	[0.051-0.074] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	9E-61		0.0921	[0.081-0.103] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	2E-3569		0.7055	[0.69-0.72] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs141622900-A	NR	4E-87		0.1159	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45426791	45426792	rs141622900	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	19q13.32	APOC1, APOC1P1	rs141622900-?	NR	1E-31		0.145241	[0.12-0.17] unit decrease	Illumina [4804024] (imputed)	N
931	chr19	45426791	45426792	rs141622900	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC1, APOE, PVRL2, TOMM40	rs141622900-?		3E-24				NR [NR]	N
931	chr19	45426791	45426792	rs141622900	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity (BHK stimulated assay)	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	19q13.32	APOE/C1/C2/C4	rs141622900-G	0.942	1E-11		0.2833	[0.20-0.37] unit decrease	Illumina [at least 9000000] (imputed)	N
931	chr19	45427124	45427125	rs111789331	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	19q13.32	APOC1P1	rs111789331-A	NR	1E-11		0.010173	[0.0072-0.0131] unit decrease	NR [16367095] (imputed)	N
931	chr19	45427135	45427136	rs139136389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs139136389-C	0.978405	1E-9		0.0925483	[0.063-0.122] unit decrease	NR [11722792] (imputed)	N
931	chr19	45427135	45427136	rs139136389	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs139136389-C	0.978369	8E-21		0.0705787	[0.056-0.085] unit decrease	NR [NR]	N
931	chr19	45427539	45427540	rs140526515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs140526515-G	NR	5E-27		0.2608	[0.21-0.31] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45427539	45427540	rs140526515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs140526515-G	NR	9E-35		0.2988	[0.25-0.35] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45427539	45427540	rs140526515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs140526515-G	NR	6E-31		0.2805	[0.23-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45427539	45427540	rs140526515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs140526515-G	NR	2E-45		0.3446	[0.3-0.39] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45427930	45427931	rs157599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs157599-G	NR	1E-9		0.1101	[0.074-0.146] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45427930	45427931	rs157599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs157599-G	NR	2E-13		0.1335	[0.098-0.169] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45428233	45428234	rs66626994	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	High density lipoprotein cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	19q13.32	APOC1	rs66626994-A	0.1	2E-9		0.0396	[0.027-0.053] unit decrease	Affymetrix [at least 805769] (imputed)	N
931	chr19	45429098	45429099	rs10424663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs10424663-A	NR	3E-11		0.1684	[0.12-0.22] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IRF6	5,367 Icelandic ancestry individuals	NA	19q13.32		rs71352239-T	0.3086	4E-47		0.291307	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	3E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	2E-158		0.0722	[0.067-0.077] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	4E-42		0.0367	[0.031-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	4E-211		0.0835	[0.078-0.089] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	2E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	2E-12		0.0191	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	2E-9		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	9E-244		0.0899	[0.085-0.095] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	1E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs71352239-T	NR	1E-18		0.0237	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429542	45429543	rs71352239	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOC1P1	rs71352239-C	0.807	3E-14		1.4492754	[1.32-1.59]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45429542	45429543	rs71352239	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs71352239-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45429707	45429708	rs60049679	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs60049679-C	0.035	6E-15		2.034	[1.702-2.432]	NR [38043082] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	3E-39		0.0604	[0.051-0.069] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	4E-191		0.1356	[0.13-0.14] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	2E-23		0.0459	[0.037-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	3E-217		0.1448	[0.14-0.15] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	3E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	4E-169		0.1277	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	2E-285		0.1664	[0.16-0.18] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs60049679-C	NR	2E-29		0.0545	[0.045-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45429707	45429708	rs60049679	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOC1P1	rs60049679-C	0.038	1E-17		2.07	[1.75-2.44]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45429707	45429708	rs60049679	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs60049679-?	NR	2E-70				Affymetrix [7795605] (imputed)	N
931	chr19	45429707	45429708	rs60049679	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs60049679-?	NR	2E-70				Affymetrix [7795605] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs5112-C	0.464744	1E-14		0.0345784	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-72		0.0779124	[0.069-0.086] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	3E-75		0.0778668	[0.07-0.086] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-29		0.048968	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	2E-69		0.0754241	[0.067-0.084] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	4E-68		0.0751102	[0.067-0.084] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	5E-77		0.0799589	[0.072-0.088] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	2E-74		0.0779025	[0.07-0.086] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	4E-84		0.0828723	[0.075-0.091] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	2E-57		0.0692791	[0.061-0.078] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	3E-78		0.0801811	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-80		0.0811629	[0.073-0.09] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	3E-79		0.0807926	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	6E-89		0.0868322	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs5112-C	0.466279	9E-66		0.0750365	[0.066-0.084] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs5112-C	0.466279	7E-45		0.0615391	[0.053-0.07] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	5E-85		0.0836043	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	2E-78		0.0802525	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs5112-C	0.466279	2E-31		0.0495704	[0.041-0.058] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs5112-C	0.466279	6E-76		0.080703	[0.072-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs5112-C	0.464744	2E-26		0.0469839	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-89		0.0861813	[0.078-0.095] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-75		0.0789414	[0.071-0.087] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	4E-76		0.0786477	[0.07-0.087] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	6E-77		0.0794559	[0.071-0.088] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	3E-81		0.0836269	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	1E-83		0.0839559	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	2E-80		0.0822799	[0.074-0.091] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5112-C	0.466265	7E-59		0.0670186	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I11	5,363 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	3E-40		0.248113	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,366 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	1E-40		0.250517	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TBCA	5,361 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	2E-40		0.243855	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SNRPF	5,356 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	3E-19		0.160067	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein S100A13	5,366 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	2E-27		0.201668	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG5	5,361 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	4E-15		0.146452	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSD2	5,364 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	5E-28		0.206913	[0.17-0.24] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PMEPA1	5,365 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	1E-24		0.193278	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NEFL	5,354 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	1E-17		0.153263	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM159B	5,365 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	2E-17		0.161294	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	5E-32		0.220385	[0.18-0.26] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,366 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	3E-15		0.150495	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,356 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	5E-15		0.143443	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,356 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	8E-25		0.187097	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIMP1	5,349 Icelandic ancestry individuals	NA	19q13.32		rs5112-C	0.4985	9E-30		0.197478	[0.16-0.23] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45430279	45430280	rs5112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19q13.32		rs5112-G	NR	3E-15		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
931	chr19	45430279	45430280	rs5112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.32		rs5112-G	NR	2E-131		0.0608	[0.056-0.066] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
931	chr19	45430279	45430280	rs5112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.32		rs5112-G	NR	6E-15		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
931	chr19	45430279	45430280	rs5112	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.32	APOC1P1	rs5112-C	0.466651	7E-189		0.00720895	[0.0067-0.0077] unit increase	Affymetrix [13995440] (imputed)	N
931	chr19	45430279	45430280	rs5112	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	APOC1P1	rs5112-?		9E-18		0.0711	[0.055-0.087] unit decrease	Illumina [31500000] (imputed)	N
931	chr19	45430279	45430280	rs5112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.32	APOC1P1	rs5112-G	0.533242	2E-10		0.015237572	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45430279	45430280	rs5112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.32	APOC1P1	rs5112-G	0.533347	2E-23		0.023914421	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
931	chr19	45430279	45430280	rs5112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.32	APOC1P1	rs5112-G	0.533307	8E-12		0.016611328	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45430279	45430280	rs5112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.32	APOC1P1	rs5112-C	0.533324	7E-12		0.0165283	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
931	chr19	45430279	45430280	rs5112	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total triglycerides levels	17,563 African American individuals, 23,077 Hispanics ancestry individuals, 2,381 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals, 22,898 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	19q13.32		rs5112-?	NR	7E-14		0.068	[0.05-0.086] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
931	chr19	45430279	45430280	rs5112	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.32	APOC1	rs5112-C	0.466569	7E-224		0.0682951	[0.064-0.072] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45430279	45430280	rs5112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.32	NR	rs5112-G	0.5329740000000001	5E-20		0.00765199	[0.0059-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
931	chr19	45430279	45430280	rs5112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.32	NR	rs5112-G	0.532859	2E-13		0.00912622	[0.0065-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
931	chr19	45430279	45430280	rs5112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.32	NR	rs5112-G	0.5329740000000001	1E-14		0.00726923	[0.0053-0.0092] unit increase	Affymetrix [16582965] (imputed)	N
931	chr19	45430279	45430280	rs5112	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.32	NR	rs5112-G	0.532859	9E-10		0.00890105	[0.0059-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
931	chr19	45430279	45430280	rs5112	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	19q13.32	intergenic	rs5112-G	0.486	2E-16		0.03	[0.04-0.03] unit decrease	Illumina [NR] (imputed)	N
931	chr19	45430279	45430280	rs5112	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	APOC1	rs5112-?	NR	7E-14		0.034	[0.024-0.044] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45430279	45430280	rs5112	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	19q13.32	APOC1	rs5112-?	NR	1E-9	(Hispanic/Latino)	0.03851968	[0.026-0.051] unit increase	Illumina [31978265] (imputed)	N
931	chr19	45430279	45430280	rs5112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.32		rs5112-?	NR	3E-12				NR [~ 8900000] (imputed)	N
931	chr19	45430279	45430280	rs5112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs5112-?	NR	1E-14				NR [~ 8900000] (imputed)	N
931	chr19	45430279	45430280	rs5112	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1P1	rs5112-G	0.535	7E-25	(PH and SEC7 domain-containing protein 2, PSD2.9118.7.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45430279	45430280	rs5112	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1P1	rs5112-G	0.535	5E-21	(Protein TMEPAI, PMEPA1.6936.7.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45430279	45430280	rs5112	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1P1	rs5112-G	0.535	4E-14	(Pregnancy-specific beta-1-glycoprotein 5, PSG5.9314.9.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45430279	45430280	rs5112	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1P1	rs5112-G	0.535	3E-17	(Tumor protein p53-inducible protein 11, TP53I11.13022.20.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45430279	45430280	rs5112	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC1P1	rs5112-G	0.535	1E-11	(Neuronal pentraxin-2, NPTX2.6521.35.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45431657	45431658	rs8106813	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs8106813-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45432556	45432557	rs7259004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7259004-C	NR	7E-11		0.154547	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45432556	45432557	rs7259004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7259004-C	NR	6E-11		0.156887	[0.11-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45432556	45432557	rs7259004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.32		rs7259004-C	NR	6E-13		0.137722	[0.1-0.18] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45432556	45432557	rs7259004	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_42:0_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.32		rs7259004-C	NR	1E-10		0.0939487	[0.066-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
931	chr19	45432556	45432557	rs7259004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs7259004-C	NR	2E-117		0.0885	[0.081-0.096] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45432556	45432557	rs7259004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs7259004-C	NR	4E-173		0.1077	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45432556	45432557	rs7259004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs7259004-C	NR	1E-357		0.1552	[0.15-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45432556	45432557	rs7259004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs7259004-C	NR	3E-19		0.0387	[0.03-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45432556	45432557	rs7259004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs7259004-C	NR	1E-621		0.2053	[0.2-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45432556	45432557	rs7259004	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	19q13.32	APOE	rs7259004-C	0.119	2E-10	(Sphingomyeline C24:0)	0.0906	[0.063-0.119] unit decrease	Affymetrix, Illumina [up to 296619] (imputed)	N
931	chr19	45432556	45432557	rs7259004	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	19q13.32	APOE-C1, APOE-C2, APOE-C4	rs7259004-?	NR	5E-10	(levels)	0.0	[0.80-1.0] % increase	Illumina [NR] (imputed)	N
931	chr19	45432644	45432645	rs77719426	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs77719426-C	0.987492	8E-18		0.0886896	[0.068-0.109] unit decrease	NR [NR]	N
931	chr19	45435421	45435421	rs34731969	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs34731969-CT	0.37	3E-52	(Protein S100-A13, S100A13.7223.60.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45435421	45435421	rs34731969	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs34731969-CT	0.37	2E-17	(Inactive gamma-glutamyltranspeptidase 2, GGT2.6334.9.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45436215	45436216	rs7260330	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs7260330-G	0.39	2E-16	(RAC-beta serine/threonine-protein kinase, AKT2.14685.17.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45436215	45436216	rs7260330	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.32	APOC1P1	rs7260330-G	0.4058	1E-11		0.02651845	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
931	chr19	45436243	45436244	rs7246099	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs7246099-C	0.389	2E-55	(Tubulin-specific chaperone A, TBCA.12501.10.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688248	4E-11		0.032518	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688255	6E-9		0.0270196	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688255	2E-8		0.0256086	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688248	3E-24		0.0474428	[0.038-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688248	4E-16		0.0378731	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688248	7E-19		0.0425786	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688248	7E-26		0.0513916	[0.042-0.061] unit increase	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	19q13.32		rs7254133-C	0.688703	3E-8		0.0272128	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
931	chr19	45438553	45438554	rs7254133	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs7254133-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45438574	45438575	rs141441332	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs141441332-C	0.988603	2E-8		0.113491	[0.074-0.153] unit decrease	NR [11722792] (imputed)	N
931	chr19	45438574	45438575	rs141441332	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOC1P1, APOC4, APOC2	rs141441332-A	0.012	1E-11		2.57	[1.96-3.38]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45438642	45438643	rs4263041	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs4263041-?	NR	5E-10				Affymetrix [7795605] (imputed)	N
931	chr19	45438642	45438643	rs4263041	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs4263041-?	NR	5E-10				Affymetrix [7795605] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53I11	5,363 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	7E-18		0.18735	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,366 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	3E-15		0.172291	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTX2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	7E-8		0.117518	[0.075-0.16] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HBQ1	5,361 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	1E-7		0.114331	[0.072-0.156] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GGT2	5,366 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	1E-8		0.123874	[0.081-0.167] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRYZL1	5,363 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	8E-8		0.116208	[0.074-0.159] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARFGAP1	5,356 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	8E-8		0.112485	[0.071-0.154] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,356 Icelandic ancestry individuals	NA	19q13.32		rs35136575-G	0.2511	3E-11		0.14045	[0.099-0.182] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45439162	45439163	rs35136575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs35136575-?	NR	6E-6		1.793993	[1.02-2.57] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45439162	45439163	rs35136575	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.32	NR	rs35136575-?	NR	8E-6		0.6353315	[0.36-0.91] unit increase	Illumina [31978362] (imputed)	N
931	chr19	45439162	45439163	rs35136575	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs35136575-C	NR	3E-6		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45439162	45439163	rs35136575	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs35136575-C	0.73	9E-6	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45439162	45439163	rs35136575	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs35136575-C	NR	1E-8		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45439162	45439163	rs35136575	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs35136575-C	0.73	5E-9	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45440528	45440529	rs73045691	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs73045691-?	NR	1E-9				Affymetrix [7795605] (imputed)	N
931	chr19	45440528	45440529	rs73045691	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs73045691-?	NR	2E-19				Affymetrix [7795605] (imputed)	N
931	chr19	45441474	45441475	rs190921611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs190921611-G	0.688917	2E-11		0.0311811	[0.022-0.04] unit increase	NR [11722792] (imputed)	N
931	chr19	45441474	45441475	rs190921611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs190921611-G	0.688917	1E-11		0.0314663	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
931	chr19	45441474	45441475	rs190921611	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19q13.32		rs190921611-G	0.688917	6E-12		0.0314655	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
931	chr19	45441482	45441482	rs768388012	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs768388012-CG	0.689945	2E-29		0.0516365	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
931	chr19	45441906	45441907	rs12976395	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	3-Hydroxybutyrate levels	113,594 European ancestry individuals	NA	19q13.32		rs12976395-G	0.495401	2E-8		0.0247054	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
931	chr19	45441906	45441907	rs12976395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	APOC4	rs12976395-G	0.495953	1E-90		0.041418	[0.037-0.045] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45441906	45441907	rs12976395	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	APOC4	rs12976395-G	0.49617	1E-72		0.0380868	[0.034-0.042] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45442518	45442519	rs35336243	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	APOC1P1, APOC4, APOC2	rs35336243-T	0.293	2E-9		1.24	[1.15-1.33]	Affymetrix, Illumina [38043082] (imputed)	N
931	chr19	45442527	45442528	rs12977604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs12977604-C	0.500044	4E-14		0.0331534	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
931	chr19	45442527	45442528	rs12977604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs12977604-C	0.500041	4E-30		0.0463622	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
931	chr19	45442527	45442528	rs12977604	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs12977604-C	0.500041	9E-30		0.0458773	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
931	chr19	45443933	45443934	rs71352241	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs71352241-G	0.964329	1E-12		0.0802738	[0.058-0.102] unit increase	NR [11722792] (imputed)	N
931	chr19	45445516	45445517	rs79429216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs79429216-A	NR	1E-13		0.0782	[0.058-0.099] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45445516	45445517	rs79429216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs79429216-A	NR	5E-44		0.1466	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45445516	45445517	rs79429216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs79429216-A	NR	1E-29		0.119	[0.098-0.14] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45445516	45445517	rs79429216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs79429216-A	NR	3E-13		0.0769	[0.056-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45445516	45445517	rs79429216	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs79429216-A	NR	8E-28		0.1155	[0.095-0.136] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45445516	45445517	rs79429216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs79429216-A	0.013	7E-45	(MAP kinase-activated protein kinase 5, MAPKAPK5.8382.47.3)	1.5	[1.28-1.72] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45445516	45445517	rs79429216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs79429216-A	0.013	7E-44	(Valine--tRNA ligase, VARS.13083.18.3)	1.48	[1.26-1.7] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45445516	45445517	rs79429216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs79429216-A	0.013	5E-25	(Ubiquitin carboxyl-terminal hydrolase 21, USP21.12681.63.3)	1.12	[0.9-1.34] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45445516	45445517	rs79429216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	NR	rs79429216-A	0.013	2E-20	(Cofilin-1, CFL1.4203.50.2)	1.0	[0.78-1.22] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45446260	45446261	rs10409808	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs10409808-G	0.263	1E-8		1.487	[1.298-1.703]	NR [38043082] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	1E-9		0.0462	[0.031-0.061] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	2E-499		0.3619	[0.35-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	1E-740		0.4409	[0.43-0.46] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Lipoprotein (a) levels	272,573 European ancestry individuals, 5,018 African ancestry individuals, 6,453 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	9E-16		0.0691	[0.052-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	6E-10		0.0506	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	9E-24		0.0764	[0.062-0.091] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	1E-1085		0.5358	[0.52-0.55] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-A	NR	4E-30		0.0907	[0.075-0.106] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45447220	45447221	rs12721109	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	19q13.32	NR	rs12721109-?	NR	4E-10		15.25298	[10.47-20.03] unit decrease	Illumina [31808917] (imputed)	N
931	chr19	45447220	45447221	rs12721109	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12721109-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45447220	45447221	rs12721109	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-G	0.981	6E-74	(EA)	0.347	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45447220	45447221	rs12721109	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-G	0.99	2E-6	(Hispanic)	0.439	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45447220	45447221	rs12721109	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs12721109-G	0.981	4E-134	(EA)	0.481	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-13		0.0316009	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-37		0.0511357	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	4E-28		0.0416902	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	3E-37		0.0493668	[0.042-0.057] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-25		0.0424316	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19q13.32		rs5167-T	0.647744	5E-23		0.0400445	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	1E-11		0.0292132	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-19		0.0384768	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	8E-39		0.0525116	[0.045-0.06] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	7E-30		0.0431217	[0.036-0.051] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-40		0.0518467	[0.044-0.059] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19q13.32		rs5167-T	0.647744	2E-25		0.0424331	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19q13.32		rs5167-T	0.647744	2E-27		0.0437326	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	7E-30		0.0438314	[0.036-0.051] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs5167-T	0.647776	4E-65		0.0651813	[0.058-0.073] unit increase	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	3E-15		0.0301418	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	1E-12		0.029964	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	6E-34		0.0476713	[0.04-0.055] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	7E-23		0.0372622	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	3E-27		0.0413167	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	19q13.32		rs5167-T	0.647744	4E-11		0.0270663	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	5E-8		0.0212412	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-37		0.0507374	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	7E-28		0.0414043	[0.034-0.049] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	5E-28		0.0445313	[0.037-0.052] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	6E-18		0.0366781	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-9		0.0252873	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-12		0.030203	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-10		0.024806	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	1E-24		0.0391002	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	8E-30		0.0440035	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	1E-9		0.0256175	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-24		0.0388995	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	2E-24		0.0389912	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs5167-T	0.647734	1E-34		0.0484186	[0.041-0.056] unit decrease	NR [11722792] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein USP21	5,351 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	2E-38		0.239998	[0.2-0.28] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UBA2	5,331 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	8E-36		0.226307	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSD2	5,364 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	2E-153		0.500813	[0.46-0.54] unit decrease	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPKAPK5	5,367 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	2E-27		0.218688	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEAF1	5,350 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	9E-17		0.151857	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF3	5,366 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	5E-78		0.358913	[0.32-0.4] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFL1	5,351 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	7E-24		0.183638	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AIMP1	5,349 Icelandic ancestry individuals	NA	19q13.32		rs5167-G	0.3227	2E-13		0.136196	[0.1-0.173] unit increase	Illumina [7506463] (imputed)	N
931	chr19	45448464	45448465	rs5167	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.32	NR	rs5167-?	NR	9E-7		0.5440359	[0.33-0.76] unit increase	Illumina [31978362] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	8E-41	(Furin, FURIN.6276.16.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	7E-370	(Valine--tRNA ligase, VARS.13083.18.3)	0.87	[0.83-0.91] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	7E-17	(Transmembrane protein 59-like, TMEM59L.9959.60.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	7E-13	(Apolipoprotein L1, APOL1.9506.10.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	4E-43	(Cofilin-1, CFL1.4203.50.2)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	4E-31	(Carboxypeptidase A2, CPA2.9276.7.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	4E-13	(Leucine-rich repeat and transmembrane domain-containing protein 2, LRTM2.8906.60.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	3E-63	(Mediator of RNA polymerase II transcription subunit 4, MED4.14021.81.3)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	3E-39	(Endothelial monocyte-activating polypeptide 2, AIMP1.2714.78.2)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	3E-249	(MAP kinase-activated protein kinase 5, MAPKAPK5.8382.47.3)	0.76	[0.72-0.8] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	3E-24	(DNA repair protein XRCC4, XRCC4.9886.28.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	2E-90	(Ubiquitin carboxyl-terminal hydrolase 21, USP21.12681.63.3)	0.49	[0.45-0.53] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	2E-27	(Melanoma-associated antigen 3, MAGEA3.12576.21.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	2E-15	(Inactive peptidyl-prolyl cis-trans isomerase FKBP6, FKBP6.12529.32.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs5167-G	0.347	1E-14	(Deformed epidermal autoregulatory factor 1 homolog, DEAF1.6369.82.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
931	chr19	45448464	45448465	rs5167	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs5167-T	NR	4E-8		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45448464	45448465	rs5167	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs5167-T	0.643	5E-7	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45448464	45448465	rs5167	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs5167-T	NR	4E-20		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45448464	45448465	rs5167	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs5167-T	0.643	5E-19	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45448464	45448465	rs5167	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	19q13.32	NR	rs5167-?	NR	9E-13		0.03734	[0.027-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
931	chr19	45448464	45448465	rs5167	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.32	APOC4, APOC4-APOC2, APOC2, CTB-129P6.11	rs5167-G	0.3510532	2E-69	(EA, Granulocyte colony-stimulating factor)	0.7496	[0.67-0.83] unit increase	Affymetrix [509946]	N
931	chr19	45449165	45449166	rs12721063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs12721063-A	NR	4E-9		0.0682	[0.045-0.091] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45449198	45449199	rs2288912	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	19q13.32	APOC2, CLPTM1, APOE, APOC4	rs2288912-C	NR	4E-6		4.617	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
931	chr19	45450032	45450033	rs9304644	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19q13.32		rs9304644-C	0.546452	4E-12		0.027658	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
931	chr19	45450032	45450033	rs9304644	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs9304644-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
931	chr19	45450871	45450872	rs4803774	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs4803774-?	NR	5E-15		0.0747163	unit increase	NR [10687077] (imputed)	N
931	chr19	45452811	45452812	rs1130742	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	APOC4	rs1130742-T	0.261	5E-72	(PH and SEC7 domain-containing protein 2, PSD2.9118.7.3)	0.49	[0.43-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
931	chr19	45452844	45452845	rs10421404	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.32	NR	rs10421404-G	0.823	3E-6	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
931	chr19	45455920	45455921	rs7254723	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.32	APOC2, APOC4, APOC4-APOC2, BLOC1S3, CLASRP, CLPTM1, GEMIN7, NKPD1, PPP1R37, RELB, TRAPPC6A, ZNF296	rs7254723-?		7E-22				NR [NR]	N
931	chr19	45456102	45456103	rs190651665	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs190651665-T	0.966922	5E-9		0.0648852	[0.043-0.087] unit decrease	NR [11722792] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	4E-9		0.0393	[0.026-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	1E-10		0.0429	[0.03-0.056] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	7E-14		0.0501	[0.037-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	4E-17		0.0589	[0.045-0.073] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	2E-20		0.0619	[0.049-0.075] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	2E-21		0.0637	[0.051-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45461979	45461980	rs204906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs204906-T	NR	8E-21		0.0657	[0.052-0.079] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45461995	45461996	rs204907	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLPTM1	rs204907-G	0.049	9E-11		6.482148	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	7E-13		0.137526	[0.1-0.18] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	2E-10		0.121163	[0.084-0.158] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	3E-11		0.126562	[0.089-0.164] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	1E-10		0.125527	[0.087-0.164] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	5E-10		0.121915	[0.084-0.16] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	7E-11		0.127927	[0.09-0.166] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	4E-9		0.114229	[0.076-0.152] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs116949436-G	0.988657	7E-11		0.127367	[0.089-0.166] unit decrease	NR [11722792] (imputed)	N
931	chr19	45463385	45463386	rs116949436	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.32		rs116949436-A	0.01119	1E-19		95.149284	z score increase	NR [6814003]	N
931	chr19	45463385	45463386	rs116949436	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLPTM1	rs116949436-A	0.01073	7E-50		14.848961	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45463397	45463398	rs576651896	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLPTM1	rs576651896-G	0.004649	2E-11		6.6975107	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45466334	45466335	rs204914	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs204914-C	0.953229	4E-33		0.0589887	[0.049-0.069] unit decrease	NR [NR]	N
931	chr19	45467131	45467132	rs138692741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs138692741-C	0.964395	2E-8		0.0632105	[0.041-0.085] unit decrease	NR [11722792] (imputed)	N
931	chr19	45467131	45467132	rs138692741	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs138692741-C	0.964395	3E-9		0.0668286	[0.045-0.089] unit decrease	NR [11722792] (imputed)	N
931	chr19	45467131	45467132	rs138692741	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	CLPTM1	rs138692741-C	0.96422	3E-36		0.0715279	[0.06-0.083] unit decrease	Affymetrix [NR] (imputed)	N
931	chr19	45469901	45469902	rs117198034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs117198034-T	NR	6E-11		0.054	[0.038-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45469901	45469902	rs117198034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.32	NR	rs117198034-T	NR	8E-10		0.0507	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45469901	45469902	rs117198034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs117198034-T	NR	3E-11		0.0549	[0.039-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45469901	45469902	rs117198034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs117198034-T	NR	3E-19		0.074	[0.058-0.09] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45469901	45469902	rs117198034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs117198034-T	NR	4E-11		0.0547	[0.038-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
931	chr19	45473712	45473712	rs750093185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs750093185-AGTGGCATGATC,rs750093185-AGTGGCATGATC	0.339211	1E-26		0.0466542	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
931	chr19	45473712	45473712	rs750093185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs750093185-AGTGGCATGATC,rs750093185-AGTGGCATGATC	0.339211	1E-26		0.0466542	[0.038-0.055] unit decrease	NR [11722792] (imputed)	N
931	chr19	45477110	45477111	rs204480	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLPTM1	rs204480-T	0.2501	6E-9		5.81275	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
931	chr19	45477380	45477381	rs16979595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs16979595-A	NR	3E-30		0.037	[0.031-0.043] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45477380	45477381	rs16979595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs16979595-A	NR	5E-21		0.0306	[0.024-0.037] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45477380	45477381	rs16979595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs16979595-A	NR	4E-16		0.0276	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
931	chr19	45477380	45477381	rs16979595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs16979595-A	NR	1E-18		0.0286	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45483720	45483721	rs145729706	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPKAPK5	5,367 Icelandic ancestry individuals	NA	19q13.32		rs145729706-A	0.0168	4E-28		0.793758	[0.65-0.94] unit increase	Illumina [7506463] (imputed)	N
932	chr19	45486147	45486148	rs57270598	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs57270598-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45487177	45487178	rs204474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19q13.32		rs204474-C	0.355667	5E-10		0.0254926	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
932	chr19	45487177	45487178	rs204474	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.32		rs204474-C	0.35563	1E-27		0.0432692	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
932	chr19	45487177	45487178	rs204474	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	19q13.32	APOC1	rs204474-?	NR	2E-15		0.007205	[0.0052-0.0092] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
932	chr19	45490191	45490192	rs11672748	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLPTM1	rs11672748-G	0.3171	1E-23		10.028075	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45490284	45490285	rs204469	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	CLPTM1	rs204469-A	0.043667	9E-9		0.0294656	[0.019-0.039] unit decrease	Affymetrix [NR] (imputed)	N
932	chr19	45499387	45499388	rs56784978	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.32		rs56784978-T	0.682456	3E-8		0.0241984	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
932	chr19	45500711	45500712	rs2376866	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs2376866-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45504348	45504349	rs35577563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs35577563-C	0.636637	4E-10		0.0242252	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
932	chr19	45504348	45504349	rs35577563	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	19q13.32		rs35577563-C	0.636637	3E-13		0.0281317	[0.021-0.036] unit decrease	NR [11722792] (imputed)	N
932	chr19	45504348	45504349	rs35577563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.32	RELB	rs35577563-G	0.361226	3E-9		0.013737018	[0.0092-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr19	45504348	45504349	rs35577563	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19q13.32	APOC1	rs35577563-?	NR	8E-24		0.009419	[0.0073-0.0116] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
932	chr19	45504526	45504527	rs117612135	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs117612135-?	NR	2E-26				Affymetrix [7795605] (imputed)	N
932	chr19	45504526	45504527	rs117612135	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs117612135-?	NR	9E-31				Affymetrix [7795605] (imputed)	N
932	chr19	45505176	45505177	rs35194062	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs35194062-C	0.94239	3E-8		0.0497452	[0.032-0.067] unit increase	NR [11722792] (imputed)	N
932	chr19	45505176	45505177	rs35194062	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs35194062-C	0.94239	5E-9		0.0521544	[0.035-0.07] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505176	45505177	rs35194062	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	19q13.32	APOE	rs35194062-?	NR	8E-18		0.198766	unit increase	NR [10687077] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-21		0.308078	[0.24-0.37] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	5E-20		0.306885	[0.24-0.37] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-25		0.347375	[0.28-0.41] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	4E-16		0.266968	[0.2-0.33] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-23		0.334083	[0.27-0.4] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-22		0.326937	[0.26-0.39] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	8E-26		0.349866	[0.28-0.42] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	7E-19		0.308045	[0.24-0.38] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	4E-14		0.262895	[0.19-0.33] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-19		0.30824	[0.24-0.38] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	4E-18		0.300071	[0.23-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-19		0.304878	[0.24-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	5E-10		0.210746	[0.14-0.28] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-12		0.235788	[0.17-0.3] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-15		0.267906	[0.2-0.34] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	8E-12		0.229967	[0.16-0.3] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	4E-10		0.216611	[0.15-0.28] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-16		0.27897	[0.21-0.35] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-24		0.333199	[0.27-0.4] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	8E-22		0.3218	[0.26-0.39] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	5E-15		0.260713	[0.2-0.33] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-30		0.397672	[0.33-0.47] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	7E-18		0.299542	[0.23-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-20		0.321349	[0.25-0.39] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-21		0.331115	[0.26-0.4] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-16		0.27539	[0.21-0.34] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-19		0.307541	[0.24-0.38] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-22		0.320901	[0.26-0.39] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-20		0.299436	[0.23-0.36] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-36		0.436836	[0.37-0.5] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-26		0.365294	[0.3-0.43] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-25		0.356761	[0.29-0.42] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-27		0.371665	[0.3-0.44] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-20		0.305889	[0.24-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-11		0.236845	[0.17-0.3] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-14		0.267947	[0.2-0.34] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-14		0.258564	[0.19-0.33] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-20		0.318283	[0.25-0.39] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-22		0.334972	[0.27-0.4] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-22		0.315463	[0.25-0.38] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	3E-29		0.37903	[0.31-0.45] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-11		0.233324	[0.17-0.3] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	5E-15		0.269762	[0.2-0.34] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-18		0.300995	[0.23-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-16		0.278763	[0.21-0.35] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	1E-24		0.343349	[0.28-0.41] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	7E-22		0.314952	[0.25-0.38] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	9E-18		0.289298	[0.22-0.36] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-16		0.264246	[0.2-0.33] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-20		0.30848	[0.24-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	6E-27		0.36201	[0.3-0.43] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	7E-18		0.299336	[0.23-0.37] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	8E-11		0.225286	[0.16-0.29] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-14		0.266868	[0.2-0.34] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-20		0.318635	[0.25-0.39] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-23		0.335347	[0.27-0.4] unit increase	NR [11722792] (imputed)	N
932	chr19	45505226	45505227	rs576269767	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs576269767-C	0.996163	2E-13		0.254008	[0.19-0.32] unit increase	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	2E-9		0.107074	[0.072-0.142] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	2E-8		0.100387	[0.066-0.135] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	6E-10		0.109891	[0.075-0.145] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	9E-10		0.108562	[0.074-0.143] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	2E-8		0.0972687	[0.064-0.131] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	3E-9		0.105577	[0.071-0.14] unit decrease	NR [11722792] (imputed)	N
932	chr19	45505802	45505803	rs112170101	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs112170101-G	0.986207	1E-8		0.101054	[0.066-0.136] unit decrease	NR [11722792] (imputed)	N
932	chr19	45507695	45507696	rs140912273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs140912273-G	0.984751	8E-38		0.224969	[0.19-0.26] unit decrease	NR [11722792] (imputed)	N
932	chr19	45507695	45507696	rs140912273	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs140912273-G	0.984751	1E-37		0.22384	[0.19-0.26] unit increase	NR [11722792] (imputed)	N
932	chr19	45513235	45513236	rs874743	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs874743-G	0.978998	5E-10		0.0892617	[0.061-0.117] unit increase	NR [11722792] (imputed)	N
932	chr19	45513853	45513854	rs79149284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs79149284-T	NR	6E-11		0.041	[0.029-0.053] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45516049	45516050	rs35194383	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	RELB	rs35194383-T	0.4234	8E-13		7.1647267	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45516049	45516050	rs35194383	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs35194383-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45516880	45516881	rs34874378	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs34874378-G	0.954126	2E-22		0.0483231	[0.039-0.058] unit increase	NR [NR]	N
932	chr19	45516880	45516881	rs34874378	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	RELB	rs34874378-A	0.04366	9E-22		9.593067	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45516880	45516881	rs34874378	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs34874378-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45518987	45518988	rs10412986	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	19q13.32		rs10412986-?	NR	1E-8		0.5302	[0.35-0.71] unit decrease	Affymetrix [NR] (imputed)	N
932	chr19	45519099	45519100	rs35891370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs35891370-A	NR	2E-14		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45519099	45519100	rs35891370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs35891370-A	NR	3E-26		0.0262	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45519099	45519100	rs35891370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs35891370-A	NR	2E-42		0.0339	[0.029-0.039] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	1E-8		0.104996	[0.069-0.141] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	8E-9		0.10742	[0.071-0.144] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	1E-9		0.113254	[0.077-0.15] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	2E-8		0.104347	[0.068-0.141] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	4E-8		0.102806	[0.066-0.139] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	1E-8		0.103121	[0.068-0.138] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	5E-9		0.108778	[0.072-0.145] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	3E-10		0.116905	[0.08-0.153] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	9E-10		0.113437	[0.077-0.15] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	6E-9		0.107432	[0.071-0.144] unit decrease	NR [11722792] (imputed)	N
932	chr19	45522288	45522289	rs74359223	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs74359223-G	0.987248	1E-9		0.113854	[0.077-0.15] unit decrease	NR [11722792] (imputed)	N
932	chr19	45523060	45523061	rs112380717	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs112380717-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45523582	45523583	rs4803791	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		RELB	rs4803791-A	0.25	7E-7		0.12	[0.07-0.17] unit increase	Illumina [1679420] (imputed)	N
932	chr19	45523582	45523583	rs4803791	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA		NR	rs4803791-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45524118	45524119	rs114248186	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs114248186-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45529846	45529847	rs34034398	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs34034398-G	0.992858	1E-10		0.162816	[0.11-0.21] unit decrease	NR [11722792] (imputed)	N
932	chr19	45530551	45530552	rs11881101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs11881101-G	NR	2E-19		0.0272	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr19	45530551	45530552	rs11881101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs11881101-G	NR	2E-21		0.0287	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr19	45530551	45530552	rs11881101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs11881101-G	NR	3E-27		0.0327	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr19	45541781	45541782	rs34827707	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	19q13.32	NR	rs34827707-A	0.0340516	9E-17		0.272045	[0.21-0.34] mg/dl decrease	Illumina [24111857] (imputed)	N
932	chr19	45543754	45543755	rs76856627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs76856627-G	NR	7E-14		0.0506	[0.037-0.064] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45543754	45543755	rs76856627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs76856627-G	NR	4E-19		0.0603	[0.047-0.074] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45543754	45543755	rs76856627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs76856627-G	NR	5E-17		0.0567	[0.043-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
932	chr19	45543754	45543755	rs76856627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs76856627-G	NR	3E-31		0.0787	[0.065-0.092] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45543754	45543755	rs76856627	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLASRP	rs76856627-G	0.0329	1E-16		8.306043	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45543754	45543755	rs76856627	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs76856627-?	NR	9E-11				Affymetrix [7795605] (imputed)	N
932	chr19	45543754	45543755	rs76856627	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs76856627-?	NR	9E-11				Affymetrix [7795605] (imputed)	N
932	chr19	45549134	45549135	rs112481437	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLASRP	rs112481437-A	0.02337	1E-17		8.578216	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45549134	45549135	rs112481437	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs112481437-?	NR	6E-15				Affymetrix [7795605] (imputed)	N
932	chr19	45549134	45549135	rs112481437	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs112481437-?	NR	6E-15				Affymetrix [7795605] (imputed)	N
932	chr19	45552586	45552587	rs147188206	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CLASRP	rs147188206-C	0.008636	3E-14		7.5976734	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45552586	45552587	rs147188206	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs147188206-?	NR	2E-9				Affymetrix [7795605] (imputed)	N
932	chr19	45552586	45552587	rs147188206	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs147188206-?	NR	2E-9				Affymetrix [7795605] (imputed)	N
932	chr19	45566079	45566080	rs7259567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs7259567-G	NR	1E-15		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45566079	45566080	rs7259567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs7259567-G	NR	6E-24		0.0241	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45574112	45574113	rs201269048	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.32	APOE	rs201269048-?	NR	1E-9		4.563	[3.04-6.09] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
932	chr19	45578311	45578312	rs77632188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs77632188-G	NR	1E-9		0.0551	[0.037-0.073] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45578311	45578312	rs77632188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs77632188-G	NR	8E-12		0.062	[0.044-0.08] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45580371	45580372	rs60239918	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs60239918-T	NR	4E-13		0.0439	[0.032-0.056] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45580371	45580372	rs60239918	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs60239918-T	NR	1E-10		0.039	[0.027-0.051] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45580371	45580372	rs60239918	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs60239918-T	NR	3E-11		0.0403	[0.028-0.052] unit increase	Affymetrix [9000000] (imputed)	N
932	chr19	45580371	45580372	rs60239918	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CTB-179K24.3	rs60239918-T	0.03999	2E-15		7.945099	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45580371	45580372	rs60239918	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs60239918-?	NR	7E-13				Affymetrix [7795605] (imputed)	N
932	chr19	45580371	45580372	rs60239918	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs60239918-?	NR	3E-13				Affymetrix [7795605] (imputed)	N
932	chr19	45581075	45581076	rs183321458	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CTB-179K24.3	rs183321458-A	0.003582	2E-11		6.7473207	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45582401	45582402	rs7251911	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs7251911-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45584691	45584692	rs8100183	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs8100183-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45591083	45591084	rs78620885	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs78620885-C	0.969517	1E-17		0.0505689	[0.039-0.062] unit increase	NR [NR]	N
932	chr19	45591083	45591084	rs78620885	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs78620885-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45592474	45592475	rs9653111	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CTB-179K24.3, GEMIN7, MARK4	rs9653111-T	0.1298	1E-8		5.6693845	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
932	chr19	45597782	45597782	rs149151450	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	19q13.32	APOE, GEMIN7, APOC1, PPP1R37, NKPD1, TRAPPC6A	rs149151450-A	0.097	6E-10		0.042	[0.028-0.056] unit decrease	Illumina [7358575] (imputed)	N
932	chr19	45601600	45601601	rs138137383	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs138137383-?	NR	2E-15				Affymetrix [7795605] (imputed)	N
932	chr19	45601600	45601601	rs138137383	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs138137383-?	NR	2E-15				Affymetrix [7795605] (imputed)	N
932	chr19	45605307	45605308	rs12461065	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs12461065-?	NR	1E-8				Affymetrix [7795605] (imputed)	N
932	chr19	45605307	45605308	rs12461065	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12461065-?	NR	1E-17				Affymetrix [7795605] (imputed)	N
933	chr19	45614834	45614835	rs77653204	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.32	PPP1R37	rs77653204-A	0.955524	6E-15		0.00419691	[0.0031-0.0053] unit decrease	Affymetrix [13995440] (imputed)	N
933	chr19	45617262	45617263	rs62118464	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	MARK4	rs62118464-G	0.882398	5E-17		0.0276497	[0.021-0.034] unit decrease	Affymetrix [NR] (imputed)	N
933	chr19	45620512	45620513	rs113405869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs113405869-T	NR	2E-9		0.0218	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45624302	45624303	rs10409138	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.32	NR	rs10409138-?	NR	5E-9				Affymetrix [NR]	N
933	chr19	45629103	45629104	rs145903417	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs145903417-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45629165	45629166	rs56089021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs56089021-A	NR	1E-11		0.028	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45631815	45631816	rs17643262	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs17643262-?	NR	3E-18				Affymetrix [7795605] (imputed)	N
933	chr19	45631815	45631816	rs17643262	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs17643262-?	NR	2E-30				Affymetrix [7795605] (imputed)	N
933	chr19	45634681	45634682	rs10408847	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs10408847-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45634853	45634854	rs79018068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs79018068-G	NR	3E-12		0.0454	[0.033-0.058] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45634853	45634854	rs79018068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs79018068-G	NR	4E-14		0.0492	[0.036-0.062] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45634853	45634854	rs79018068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs79018068-G	NR	2E-10		0.0413	[0.029-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45634853	45634854	rs79018068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs79018068-G	NR	9E-21		0.0609	[0.048-0.074] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45640764	45640765	rs536518226	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs536518226-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45649837	45649838	rs78073763	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs78073763-G	NR	3E-12		0.0298	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45649837	45649838	rs78073763	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs78073763-G	NR	5E-19		0.038	[0.03-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45649837	45649838	rs78073763	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs78073763-G	NR	4E-31		0.0495	[0.041-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45650098	45650099	rs74846209	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	19q13.32		rs74846209-T	0.097	3E-8		1.3	[1.185-1.426]	NR [38043082] (imputed)	N
933	chr19	45650098	45650099	rs74846209	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	PPP1R37	rs74846209-T	0.101	9E-16		1.43	[1.31-1.56]	Affymetrix, Illumina [38043082] (imputed)	N
933	chr19	45651236	45651237	rs113321260	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.32		rs113321260-A	0.08209	4E-20		97.3293	z score increase	NR [6814003]	N
933	chr19	45655332	45655333	rs28469095	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, NKPD1	rs28469095-C	0.09149	2E-38		12.963469	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45657485	45657486	rs10421247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs10421247-T	NR	1E-15		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45657485	45657486	rs10421247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs10421247-T	NR	2E-25		0.0247	[0.02-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45657485	45657486	rs10421247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs10421247-T	NR	1E-35		0.0297	[0.025-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45657485	45657486	rs10421247	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, NKPD1	rs10421247-C	0.4994	7E-9		5.801472	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45660638	45660639	rs10417602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs10417602-T	NR	6E-11		0.0292	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45660638	45660639	rs10417602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs10417602-T	NR	4E-11		0.0295	[0.021-0.038] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45660638	45660639	rs10417602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs10417602-T	NR	2E-15		0.0354	[0.027-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45660638	45660639	rs10417602	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs10417602-T	NR	1E-11		0.0305	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45667498	45667499	rs142501705	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs142501705-T	NR	5E-9		0.1217	[0.081-0.162] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45671481	45671482	rs192775394	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.32	TRAPPC6A	rs192775394-C	0.018	8E-9		1.88	[1.52-2.33]	Affymetrix, Illumina [38043082] (imputed)	N
933	chr19	45672477	45672478	rs149553138	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	19q13.32	NR	rs149553138-A	0.0366873	2E-10		0.2052668	[0.14-0.27] mg/dl decrease	Illumina [24111857] (imputed)	N
933	chr19	45690281	45690282	rs116958755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs116958755-G	NR	2E-12		0.0458	[0.033-0.059] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45690281	45690282	rs116958755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs116958755-G	NR	1E-16		0.0539	[0.041-0.067] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45690281	45690282	rs116958755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs116958755-G	NR	1E-23		0.0653	[0.053-0.078] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45690949	45690950	rs12463049	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12463049-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45691048	45691049	rs62118471	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.32	MARK4	rs62118471-T	0.972596	5E-11		0.0425822	[0.03-0.055] unit decrease	Affymetrix [NR] (imputed)	N
933	chr19	45691569	45691570	rs111243475	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs111243475-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45695737	45695738	rs2159324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs2159324-C	NR	8E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45695737	45695738	rs2159324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs2159324-C	NR	3E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45695737	45695738	rs2159324	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	MGC2650, BLOC1S3, XTP7	rs2159324-T	0.44	4E-7	(LDL-C)	0.21	[NR] mg/dL decrease	Affymetrix [408775]	N
933	chr19	45695737	45695738	rs2159324	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	19q13.32	MGC2650, BLOC1S3, XTP7	rs2159324-T	0.44	2E-6	(CRP)	0.19	[NR] mg/L decrease	Affymetrix [408775]	N
933	chr19	45696638	45696639	rs149495476	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs149495476-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45699186	45699187	rs117783785	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs117783785-A	0.986786	1E-9		0.0542155	[0.037-0.072] unit increase	NR [NR]	N
933	chr19	45704770	45704771	rs9676738	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MARK4	rs9676738-?	NR	7E-11	(male)	1.82735	[NR] unit decrease	Affymetrix [NR] (imputed)	N
933	chr19	45704770	45704771	rs9676738	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MARK4	rs9676738-?	NR	5E-11		1.43694	[NR] unit decrease	Affymetrix [NR] (imputed)	N
933	chr19	45705190	45705191	rs2627646	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs2627646-G	0.929032	3E-17		0.0333668	[0.026-0.041] unit increase	NR [NR]	N
933	chr19	45706951	45706952	rs620807	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs620807-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45707444	45707445	rs750884650	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	19q13.32	NR	rs750884650-?	NR	7E-6		0.478851	[0.27-0.69] unit decrease	NR [13958389] (imputed)	N
933	chr19	45708399	45708400	rs4461181	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs4461181-G	NR	2E-9		0.0208	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45708407	45708408	rs595290	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, AC006126.3	rs595290-C	0.1582	7E-23		9.847612	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45708407	45708408	rs595290	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs595290-?	NR	7E-12				Affymetrix [7795605] (imputed)	N
933	chr19	45708407	45708408	rs595290	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs595290-?	NR	7E-21				Affymetrix [7795605] (imputed)	N
933	chr19	45710455	45710456	rs111435864	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs111435864-T	0.955224	2E-14		0.0373335	[0.028-0.047] unit increase	NR [NR]	N
933	chr19	45711597	45711598	rs10415983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs10415983-T	NR	1E-10		0.0204	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45711597	45711598	rs10415983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs10415983-T	NR	1E-12		0.0225	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45711597	45711598	rs10415983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs10415983-T	NR	4E-14		0.024	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45711597	45711598	rs10415983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs10415983-T	NR	2E-20		0.0294	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45712678	45712679	rs73566293	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs73566293-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45714582	45714583	rs8112710	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.32		rs8112710-C	0.67	5E-34				Affymetrix [10369434] (imputed)	N
933	chr19	45714582	45714583	rs8112710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	19q13.32	NR	rs8112710-C	0.705707	1E-9		0.104801	[0.071-0.138] SD units decrease	Affymetrix, Illumina [28493265] (imputed)	N
933	chr19	45715489	45715490	rs11083766	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19q13.32	MARK4, AC006126.3	rs11083766-C	0.3386	4E-45		0.05369065	[0.046-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45715489	45715490	rs11083766	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.32	MARK4, AC006126.3	rs11083766-C	0.339	3E-30		0.04418475	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45715679	45715680	rs11083767	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19q13.32		rs11083767-T	0.66	3E-29				Affymetrix [10369434] (imputed)	N
933	chr19	45715679	45715680	rs11083767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.32	NR	rs11083767-C	NR	8E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
933	chr19	45715679	45715680	rs11083767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	19q13.32	NR	rs11083767-C	NR	2E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45715679	45715680	rs11083767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.32	MARK4, AC006126.3	rs11083767-C	0.340498	2E-16		0.01947105	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45715975	45715976	rs3803906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.32		rs3803906-G	NR	9E-18		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.32	EXOC3L2	rs3803906-G	0.341473	1E-13		0.01746371	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.32	EXOC3L2	rs3803906-G	0.340275	9E-80		0.045830633	[0.041-0.051] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.32	EXOC3L2	rs3803906-G	0.341452	1E-13		0.017702376	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.301073	1E-22				Affymetrix, Illumina [24332387] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.345333	3E-25		0.020465	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.302495	1E-28				Affymetrix, Illumina [24653286] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.345824	9E-31		0.022627	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.302322	3E-30				Affymetrix, Illumina [24558453] (imputed)	N
933	chr19	45715975	45715976	rs3803906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.32	NR	rs3803906-G	0.345818	6E-33		0.02353	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
933	chr19	45715975	45715976	rs3803906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs3803906-?	NR	3E-19				NR [~ 8900000] (imputed)	N
933	chr19	45716191	45716192	rs11667509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.32	EXOC3L2	rs11667509-C	0.377438	2E-166		0.065561876	[0.061-0.07] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45716191	45716192	rs11667509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs11667509-G	0.629812	6E-249				Affymetrix, Illumina [17210439] (imputed)	N
933	chr19	45716191	45716192	rs11667509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.32	NR	rs11667509-G	0.621583	3E-245		0.067539	[0.064-0.071] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
933	chr19	45716191	45716192	rs11667509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.32	EXOC3L2	rs11667509-C	0.378	6E-78		0.07079251	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45716196	45716197	rs11667430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.32		rs11667430-G	NR	1E-67		0.0373	[0.033-0.041] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
933	chr19	45716196	45716197	rs11667430	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.32	EXOC3L2	rs11667430-G	0.394855	2E-52		0.03615845	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45716898	45716899	rs73034885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73034885-T	NR	1E-9		0.0375	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45717614	45717615	rs10420888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs10420888-G	NR	5E-14		0.0307	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45717614	45717615	rs10420888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs10420888-G	NR	2E-19		0.0368	[0.029-0.045] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45717614	45717615	rs10420888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs10420888-G	NR	1E-26		0.0438	[0.036-0.052] unit increase	Affymetrix [9000000] (imputed)	N
933	chr19	45723705	45723706	rs12461144	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, EXOC3L2	rs12461144-T	0.1266	4E-12		6.9530225	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45723705	45723706	rs12461144	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs12461144-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45725447	45725448	rs346757	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, EXOC3L2	rs346757-C	0.08386	2E-22		9.756002	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45725738	45725739	rs346758	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs346758-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45729274	45729275	rs346763	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs346763-?	NR	3E-9				Affymetrix [7795605] (imputed)	N
933	chr19	45729274	45729275	rs346763	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs346763-?	NR	1E-12				Affymetrix [7795605] (imputed)	N
933	chr19	45734750	45734751	rs62118504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.32		rs62118504-G	NR	2E-16		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
933	chr19	45734750	45734751	rs62118504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.32		rs62118504-G	NR	7E-19		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
933	chr19	45734750	45734751	rs62118504	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs62118504-A	0.604916	6E-36		0.0267812	[0.023-0.031] unit decrease	NR [NR]	N
933	chr19	45734750	45734751	rs62118504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs62118504-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
933	chr19	45734750	45734751	rs62118504	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	MARK4, EXOC3L2	rs62118504-G	0.3957	5E-13		7.2163415	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
933	chr19	45734750	45734751	rs62118504	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.32	NA	rs62118504-A	0.6104	3E-9		0.0116	[0.0077-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
933	chr19	45734750	45734751	rs62118504	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	19q13.32	NR	rs62118504-?	NR	1E-9				Affymetrix [7795605] (imputed)	N
933	chr19	45734750	45734751	rs62118504	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs62118504-?	NR	5E-14				Affymetrix [7795605] (imputed)	N
933	chr19	45735899	45735900	rs150907907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.32	MARK4, EXOC3L2	rs150907907-C	0.00808100000000001	5E-9		0.07296672	[0.049-0.097] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45737148	45737149	rs75727214	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs75727214-G	0.98171875	3E-10	(CKM, 2670_67_4)	0.5665011	[0.39-0.74] unit increase	Illumina [> 1000000] (imputed)	N
933	chr19	45737148	45737149	rs75727214	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	NR	rs75727214-G	0.98171875	2E-11	(CKB CKM, 3714_49_2)	0.60555303	[0.43-0.78] unit increase	Illumina [> 1000000] (imputed)	N
933	chr19	45737217	45737218	rs346750	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	19q13.32	EXOC3L2	rs346750-?	NR	3E-7				Illumina [1365181]	N
933	chr19	45738851	45738852	rs67915086	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		MARK4	rs67915086-?	NR	5E-6	(male)	0.190894	[NR] unit increase	Affymetrix [NR] (imputed)	N
933	chr19	45739674	45739675	rs11667829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19q13.32		rs11667829-A	NR	3E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
933	chr19	45739674	45739675	rs11667829	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	19q13.32	NR	rs11667829-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
933	chr19	45740770	45740771	rs17356664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.32	MARK4	rs17356664-T	0.306144	2E-11		0.016587663	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45740770	45740771	rs17356664	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	19q13.32	EXOC3L2	rs17356664-C	NR	4E-10		2.599	[1.79-3.41] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
933	chr19	45741332	45741333	rs11669910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.32	MARK4	rs11669910-T	0.258654	2E-10		0.016195659	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45741332	45741333	rs11669910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.32	MARK4	rs11669910-T	0.2565	1E-15		0.03311839	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45741352	45741353	rs11669915	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19q13.32		rs11669915-A	0.741	2E-14				Affymetrix [10369434] (imputed)	N
933	chr19	45741352	45741353	rs11669915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	MARK4	rs11669915-G	0.258738	3E-41		0.03422143	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45741352	45741353	rs11669915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs11669915-?	NR	4E-35				NR [~ 8900000] (imputed)	N
933	chr19	45741608	45741609	rs11666251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.32		rs11666251-C	NR	1E-44		0.0381	[0.033-0.043] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
933	chr19	45741608	45741609	rs11666251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.32	MARK4	rs11666251-C	0.260325	3E-10		0.0159697	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45741608	45741609	rs11666251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.32	MARK4	rs11666251-C	0.260317	6E-30		0.028673632	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45742010	45742011	rs11673000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.32		rs11673000-G	NR	4E-19		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
933	chr19	45742010	45742011	rs11673000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs11673000-G	0.254544	2E-116				Affymetrix, Illumina [24588908] (imputed)	N
933	chr19	45742010	45742011	rs11673000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.32		rs11673000-?	NR	1E-18				NR [~ 8900000] (imputed)	N
933	chr19	45742093	45742094	rs11673093	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19q13.32		rs11673093-G	0.74	6E-37				Affymetrix [10369434] (imputed)	N
933	chr19	45742093	45742094	rs11673093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.32	AC006126.4	rs11673093-A	0.260261	2E-99		0.05350944	[0.049-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45742093	45742094	rs11673093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.32	AC006126.4	rs11673093-A	0.260246	6E-79		0.04755958	[0.043-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45742093	45742094	rs11673093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.32	NR	rs11673093-A	0.259737	6E-116		0.048021	[0.044-0.052] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
933	chr19	45742093	45742094	rs11673093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs11673093-A	0.256335	1E-108				Affymetrix, Illumina [23114412] (imputed)	N
933	chr19	45742093	45742094	rs11673093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.32	NR	rs11673093-A	0.259947	1E-109		0.048844	[0.045-0.053] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
933	chr19	45742093	45742094	rs11673093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.32		rs11673093-?	NR	2E-77				NR [~ 8900000] (imputed)	N
933	chr19	45742093	45742094	rs11673093	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.32	EXOC3L2	rs11673093-A	0.258	1E-10		0.047	[0.033-0.061] unit increase	Affymetrix [7947838] (imputed)	N
933	chr19	45742093	45742094	rs11673093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19q13.32	AC006126.4	rs11673093-A	0.2608	1E-13		0.03022945	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45742497	45742498	rs183657985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs183657985-T	0.259504	8E-12		0.017240109	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr19	45742901	45742902	rs145605569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs145605569-T	0.254829	3E-139				Affymetrix, Illumina [24649327] (imputed)	N
933	chr19	45742901	45742902	rs145605569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs145605569-T	0.254994	3E-216				Affymetrix, Illumina [23467995] (imputed)	N
933	chr19	45742901	45742902	rs145605569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.32	NR	rs145605569-T	0.258995	8E-17		0.018017	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
933	chr19	45742901	45742902	rs145605569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.32	NR	rs145605569-T	0.25953	6E-43		0.031199	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
933	chr19	45742901	45742902	rs145605569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs145605569-T	0.259	1E-15		0.03286374	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
933	chr19	45743134	45743135	rs55787807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs55787807-A	0.259479	8E-11		0.016727937	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45743639	45743640	rs11670562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs11670562-C	0.259299	6E-11		0.01672398	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
933	chr19	45743639	45743640	rs11670562	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.32	EXOC3L2	rs11670562-T	0.741809	2E-10		0.0136	[0.0094-0.0178] unit decrease	NR [13737936] (imputed)	N
934	chr19	45744551	45744552	rs143273199	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19q13.32		rs143273199-T	0.741	7E-72				Affymetrix [10369434] (imputed)	N
934	chr19	45744551	45744552	rs143273199	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19q13.32		rs143273199-T	0.741	1E-19				Affymetrix [10369434] (imputed)	N
934	chr19	45744551	45744552	rs143273199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.32	NR	rs143273199-C	0.259095	9E-213		0.066784	[0.063-0.071] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
934	chr19	45744551	45744552	rs143273199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs143273199-C	0.255416	3E-13				Affymetrix, Illumina [19905671] (imputed)	N
934	chr19	45744551	45744552	rs143273199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.32	NR	rs143273199-C	0.259954	1E-15		0.01875	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
934	chr19	45744735	45744737	rs554632176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs554632176-C	0.2692	3E-10		0.016077165	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45744735	45744737	rs554632176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs554632176-C	0.269199	1E-13		0.018848943	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45744841	45744842	rs73036517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.32		rs73036517-G	NR	2E-98		0.0558	[0.051-0.061] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
934	chr19	45744841	45744842	rs73036517	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19q13.32		rs73036517-?	NR	5E-8				Affymetrix [NR] (imputed)	N
934	chr19	45744841	45744842	rs73036517	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19q13.32		rs73036517-A	0.741	6E-41				Affymetrix [10369434] (imputed)	N
934	chr19	45744841	45744842	rs73036517	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19q13.32	NR	rs73036517-G	0.2596	2E-8		0.001455	[0.00095-0.00196] unit decrease	Affymetrix [NR] (imputed)	N
934	chr19	45744841	45744842	rs73036517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.259365	4E-154		0.06701899	[0.062-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr19	45744841	45744842	rs73036517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.25941	5E-14		0.019117482	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr19	45744841	45744842	rs73036517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.32	NR	rs73036517-G	0.258764	1E-137		0.052727	[0.049-0.057] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
934	chr19	45744841	45744842	rs73036517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs73036517-G	0.253855	3E-14				Affymetrix, Illumina [23472807] (imputed)	N
934	chr19	45744841	45744842	rs73036517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs73036517-G	0.255079	2E-39				Affymetrix, Illumina [19872809] (imputed)	N
934	chr19	45744841	45744842	rs73036517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.2596	5E-35		0.0508198	[0.043-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45744841	45744842	rs73036517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.2596	1E-31		0.04819154	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45744841	45744842	rs73036517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.2596	4E-32		0.04852503	[0.04-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45744841	45744842	rs73036517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.2597	3E-41		0.0556092	[0.048-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45744841	45744842	rs73036517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19q13.32	MARK4, AC006126.4	rs73036517-G	0.2596	1E-34		0.05057576	[0.042-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45745052	45745052	rs137991431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19q13.32		rs137991431-CCA	NR	5E-15		0.0226	[0.017-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
934	chr19	45745052	45745052	rs137991431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs137991431-CCA	0.258769	2E-11		0.01703682	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45745052	45745052	rs137991431	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs137991431-CCA	0.258805	1E-35		0.03175271	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr19	45745606	45745607	rs74444983	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	19q13.32	EXOC3L2, MARK4	rs74444983-T	0.741	9E-9		0.0143	[0.0094-0.0192] unit decrease	Affymetrix [11535925] (imputed)	N
934	chr19	45748361	45748362	rs73036519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs73036519-C	0.300412	9E-10		0.014996857	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45748361	45748362	rs73036519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs73036519-C	0.299989	9E-27		0.026794406	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45748361	45748362	rs73036519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.32	MARK4, AC006126.4	rs73036519-C	0.300388	6E-15		0.01910718	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45748361	45748362	rs73036519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.32	NR	rs73036519-G	0.699571	7E-10		0.00855634	[0.0059-0.0112] unit increase	Affymetrix [16585854] (imputed)	N
934	chr19	45748361	45748362	rs73036519	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.32	NR	rs73036519-G	0.699571	6E-14		0.0115917	[0.0085-0.0147] unit increase	Affymetrix [16585866] (imputed)	N
934	chr19	45748361	45748362	rs73036519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.32		rs73036519-?	NR	4E-10				NR [~ 8900000] (imputed)	N
934	chr19	45748361	45748362	rs73036519	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	19q13.32	APOE, EXOC3L2, MARK4	rs73036519-?	NR	3E-7	(EA)	1.098901		Illumina [12023830] (imputed)	N
934	chr19	45749483	45749484	rs73036520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19q13.32		rs73036520-C	NR	6E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
934	chr19	45749483	45749484	rs73036520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19q13.32		rs73036520-C	NR	8E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
934	chr19	45749483	45749484	rs73036520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.32	MARK4	rs73036520-C	0.253898	2E-49		0.03938477	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr19	45749483	45749484	rs73036520	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.32	MARK4	rs73036520-C	0.2544	1E-11		0.02801535	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45751156	45751157	rs12459847	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	19q13.32	NR	rs12459847-G	0.744212	4E-9		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
934	chr19	45751156	45751157	rs12459847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19q13.32	MARK4	rs12459847-C	0.2555	9E-27		0.04524077	[0.037-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45751156	45751157	rs12459847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.32	MARK4	rs12459847-C	0.2557	2E-34		0.05158965	[0.043-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45751156	45751157	rs12459847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.32	MARK4	rs12459847-C	0.256	1E-55		0.06467151	[0.057-0.073] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45755367	45755368	rs117955557	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.32		rs117955557-G	0.744	1E-45				Affymetrix [10369434] (imputed)	N
934	chr19	45760919	45760920	rs151165225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.32	MARK4	rs151165225-T	0.255284	6E-59		0.041993663	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr19	45760919	45760920	rs151165225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.32	MARK4	rs151165225-T	0.2563	8E-9		0.02344448	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45766728	45766729	rs7255933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.32	MARK4	rs7255933-A	0.2576	2E-11		0.017281776	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45766728	45766729	rs7255933	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19q13.32	MARK4	rs7255933-A	0.2588	4E-40		0.05430594	[0.046-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45784196	45784197	rs75816342	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs75816342-A	NR	4E-12		0.036	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
934	chr19	45786554	45786555	rs12982781	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19q13.32	MARK4	rs12982781-C	0.3391	1E-18		0.03377579	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
934	chr19	45790299	45790300	rs74827760	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs74827760-T	NR	5E-10		0.0385	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr19	45790299	45790300	rs74827760	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs74827760-T	NR	2E-12		0.0437	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr19	45790299	45790300	rs74827760	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs74827760-T	NR	8E-17		0.0516	[0.039-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr19	45791837	45791838	rs344812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.32	MARK4	rs344812-C	0.306335	2E-10		0.015484117	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
934	chr19	45807930	45807931	rs10415720	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	19q13.32	NR	rs10415720-A		2E-6				Illumina [458865]	N
934	chr19	45807944	45807945	rs12971645	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.32	MARK4	rs12971645-G	0.724598	3E-8		0.00859421	[0.0056-0.0116] unit increase	Affymetrix [12370749]	N
934	chr19	45807944	45807945	rs12971645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.32		rs12971645-?	NR	2E-8				NR [~ 8900000] (imputed)	N
934	chr19	45811691	45811692	rs149354459	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	19q13.32		rs149354459-?	NR	2E-11		0.130266	[0.094-0.167] unit increase	NR [9800000] (imputed)	N
934	chr19	45811691	45811692	rs149354459	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.32		rs149354459-G	0.0021	6E-20		0.55	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45814280	45814281	rs111273322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.32		rs111273322-?	NR	2E-9				NR [~ 8900000] (imputed)	N
934	chr19	45814907	45814908	rs7260359	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	19q13.32	CKM	rs7260359-T	NR	2E-8		0.01670676	[0.011-0.023] unit decrease	Affymetrix [NR]	N
934	chr19	45815120	45815121	rs145987658	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.32		rs145987658-A	8.6E-4	9E-9		0.59	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45815162	45815163	rs17357122	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.32		rs17357122-A	0.0099	4E-9		0.165	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45815247	45815248	rs10402747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19q13.32		rs10402747-?	NR	2E-9				NR [~ 8900000] (imputed)	N
934	chr19	45815247	45815248	rs10402747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.32		rs10402747-T	0.5175	5E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
934	chr19	45815247	45815248	rs10402747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.32	Intergenic	rs10402747-T	0.5175	2E-9	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
934	chr19	45815247	45815248	rs10402747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q13.32	Intergenic	rs10402747-T	0.518	5E-9	(MTAG)	0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
934	chr19	45821182	45821183	rs11559024	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	CKM	rs11559024-C	0.022	9E-16	(Creatine kinase M-type, CKM.2670.67.4)	0.68	[0.52-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
934	chr19	45821182	45821183	rs11559024	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in statin users	5,207 Icelandic ancestry individuals	NA	19q13.32		rs11559024-?	NA	5E-18		0.486	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45821182	45821183	rs11559024	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	19q13.32		rs11559024-?	NR	1E-23		0.468	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45821182	45821183	rs11559024	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.32		rs11559024-C	0.0215	2E-115		0.446	unit decrease	Illumina [28300000] (imputed)	N
934	chr19	45821182	45821183	rs11559024	25214527	Dube MP	2014-09-11	Circ Cardiovasc Genet	CKM and LILRB5 are associated with serum levels of creatine kinase.	Creatine kinase levels in statin users	3,412 European ancestry individuals	3,389 European ancestry individuals	19q13.32	CKM	rs11559024-G	0.010	4E-16		0.501	[0.38-0.62] unit decrease	Illumina [3232779] (imputed)	N
934	chr19	45830946	45830947	rs123187	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	CKM	rs123187-A	0.3694	4E-8		5.504638	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
934	chr19	45854918	45854919	rs13181	23108145	Wang LE	2012-10-29	Cancer Res	Genome-wide association study reveals novel genetic determinants of DNA repair capacity in lung cancer.	Lung Cancer (DNA repair capacity)	914 European ancestry non-small cell lung cancer cases, 860 European ancestry controls	679 European ancestry ancestry non-small cell lung cancer cases, 695 European ancestry controls	19q13.32	ERCC2, XPD	rs13181-C	0.3613	9E-7				Illumina [303669]	N
934	chr19	45856819	45856820	rs3916875	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKM	5,363 Icelandic ancestry individuals	NA	19q13.32		rs3916875-A	0.02122	4E-20		0.593573	[0.47-0.72] unit decrease	Illumina [7506463] (imputed)	N
934	chr19	45856819	45856820	rs3916875	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKB;CKM	5,368 Icelandic ancestry individuals	NA	19q13.32		rs3916875-A	0.02122	6E-21		0.612944	[0.49-0.74] unit decrease	Illumina [7506463] (imputed)	N
934	chr19	45859684	45859685	rs3916862	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	19q13.32	ERCC2	rs3916862-T	NR	2E-8		0.483	[0.31-0.65] unit increase	NR [11024754] (imputed)	N
934	chr19	45860157	45860158	rs3916856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs3916856-A	NR	2E-10		0.041	[0.028-0.054] unit increase	Affymetrix [9000000] (imputed)	N
934	chr19	45860157	45860158	rs3916856	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs3916856-A	NR	1E-13		0.048	[0.035-0.061] unit increase	Affymetrix [9000000] (imputed)	N
934	chr19	45861591	45861592	rs3916847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs3916847-C	NR	4E-14		0.0459	[0.034-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr19	45887927	45887928	rs7257687	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	19q13.32	PPP1R13L	rs7257687-T	0.03	8E-6		0.3	[0.16-0.44] unit decrease	Illumina [14638245] (imputed)	N
935	chr19	45907859	45907860	rs928911	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs928911-T	NR	1E-10		0.0366	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
935	chr19	45907859	45907860	rs928911	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs928911-T	NR	1E-12		0.0405	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
935	chr19	45909049	45909050	rs1005165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.32	PPP1R13L	rs1005165-T	0.16405	2E-9		0.018297248	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr19	45910002	45910003	rs8113779	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.32		rs8113779-G	0.836	6E-10				Affymetrix [10369434] (imputed)	N
935	chr19	45918244	45918245	rs41558212	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	19q13.32	ERCC1	rs41558212-?	NR	9E-6		3.18	[2.01-5.05]	Illumina [654642] (imputed)	N
935	chr19	45949899	45949900	rs12611268	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12611268-T	NR	8E-11		0.0197	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr19	45958293	45958294	rs8109532	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	19q13.32	NR	rs8109532-G	0.69	4E-6		1.2	[NR]	Affymetrix [87696888] (imputed)	N
935	chr19	45958293	45958294	rs8109532	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs8109532-A	0.689412	1E-12		0.016203	[0.012-0.021] unit decrease	NR [NR]	N
935	chr19	45958293	45958294	rs8109532	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.32	FOSB	rs8109532-A	0.691865	5E-12		0.0143241	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
935	chr19	45958293	45958294	rs8109532	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.32		rs8109532-?	NR	2E-15		0.0181141	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
935	chr19	45959624	45959625	rs142299722	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QPCTL	5,354 Icelandic ancestry individuals	NA	19q13.32		rs142299722-T	0.01273	8E-11		0.526544	[0.37-0.69] unit decrease	Illumina [7506463] (imputed)	N
935	chr19	45971094	45971095	rs12373539	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.32		rs12373539-?	NR	1E-22		0.0300454	[0.024-0.036] unit increase	Affymetrix [20259828] (imputed)	N
935	chr19	45973055	45973056	rs2238686	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.32	FOSB	rs2238686-T	0.885116	2E-16		0.024392	[0.019-0.03] unit increase	NR [13737936] (imputed)	N
935	chr19	45973055	45973056	rs2238686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.32		rs2238686-?	NR	1E-20				NR [~ 8900000] (imputed)	N
935	chr19	45976717	45976718	rs3170167	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.32		rs3170167-?	NR	3E-22		0.0262623	[0.021-0.032] unit increase	Affymetrix [20259828] (imputed)	N
935	chr19	45976717	45976718	rs3170167	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.32	FOSB	rs3170167-T	0.850164	3E-12		0.0315889	[0.022-0.041] unit increase	NR [17166351] (imputed)	N
935	chr19	45976717	45976718	rs3170167	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	19q13.32	FOSB	rs3170167-T	0.849667	3E-6	(women)	0.0290038	[0.016-0.042] unit increase	NR [17166351] (imputed)	N
935	chr19	45996186	45996187	rs190086576	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	19q13.32	RTN2	rs190086576-G	0.01	8E-7	(EA)	0.5203	[0.32-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
935	chr19	45996186	45996187	rs190086576	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	19q13.32	RTN2	rs190086576-G	0.01	2E-6		0.4667	[0.28-0.66] unit increase	Illumina [~ 9000000] (imputed)	N
935	chr19	46000900	46000901	rs34342452	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	6,358 European and African American ancestry women	NA	19q13.32	NR	rs34342452-?	NR	2E-7		0.3684	NR unit decrease	Affymetrix, Illumina [7322639] (imputed)	N
935	chr19	46005823	46005824	rs57579470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs57579470-G	NR	6E-11		0.0247	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr19	46005823	46005824	rs57579470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs57579470-G	NR	7E-15		0.0294	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
935	chr19	46005823	46005824	rs57579470	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs57579470-G	NR	2E-18		0.0331	[0.026-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr19	46034557	46034558	rs8111589	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	19q13.32	OPA3	rs8111589-?	NR	4E-6		1.64	[1.33-2.03]	Illumina [876476]	N
936	chr19	46045172	46045173	rs7251522	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs7251522-A	0.274312	2E-10		0.029011	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
936	chr19	46045172	46045173	rs7251522	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs7251522-A	0.274312	3E-9		0.0268711	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
936	chr19	46059363	46059364	rs11673516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	19q13.32	NR	rs11673516-G	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr19	46073000	46073001	rs6509222	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs6509222-T	0.431191	4E-11		0.0134774	[0.0095-0.0175] unit decrease	NR [NR]	N
936	chr19	46089054	46089055	rs73048457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs73048457-C	NR	4E-9		0.0383	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr19	46089054	46089055	rs73048457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73048457-C	NR	2E-13		0.0481	[0.035-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
936	chr19	46121981	46121982	rs3786824	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q13.32		rs3786824-A	0.32	6E-15		7.8	z score increase	Affymetrix [9061022] (imputed)	N
936	chr19	46131179	46131180	rs12979428	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs12979428-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
937	chr19	46150181	46150182	rs10420309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	19q13.32		rs10420309-?	NR	2E-13				NR [~ 8900000] (imputed)	N
937	chr19	46153129	46153130	rs4803840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs4803840-?	NR	4E-8				NR [~ 8900000] (imputed)	N
937	chr19	46157003	46157004	rs10408179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19q13.32		rs10408179-C	NR	1E-23		0.0675	[0.054-0.081] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
937	chr19	46157018	46157019	rs10406431	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.32	GIPR	rs10406431-A	0.5625	1E-13		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
937	chr19	46157236	46157237	rs10407429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q13.32		rs10407429-A	NR	1E-17		0.071	[0.055-0.087] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
937	chr19	46157236	46157237	rs10407429	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19q13.32	NR	rs10407429-G	0.5785	5E-31		0.0539	[0.045-0.063] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
937	chr19	46157915	46157916	rs7507912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.32		rs7507912-A	NR	2E-28		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
937	chr19	46157915	46157916	rs7507912	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	19q13.32	GIPR	rs7507912-G	NR	9E-8	(Japanese)	1.11182	[1.0695-1.15581]	Illumina [7521072] (imputed)	N
937	chr19	46157928	46157936	rs113036890	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	19q13.32		rs113036890-C	0.220886039	2E-17		0.91620564	[0.89784933-0.934937308]	Illumina [8919992] (imputed)	N
937	chr19	46157928	46157936	rs113036890	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	19q13.32	EML2, GIPR	rs113036890-CAAAAAAAA	0.731	1E-32		1.1	[1.08-1.12]	Affymetrix, Illumina [11800000] (imputed)	N
937	chr19	46158416	46158417	rs8107527	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q13.32	NR	rs8107527-G	0.6245	4E-41		0.0542	[0.046-0.062] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
937	chr19	46158512	46158513	rs8108269	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	19q13.32	GIPR	rs8108269-G	0.281015346375071	3E-16		0.0644	[0.049-0.08] unit increase	NR [5035015] (imputed)	N
937	chr19	46158512	46158513	rs8108269	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	19q13.32	GIPR	rs8108269-G	0.3	5E-6		1.06	[1.02-1.11]	Affymetrix, Illumina [2500000] (imputed)	N
937	chr19	46158512	46158513	rs8108269	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	19q13.32	GIPR	rs8108269-G	NR	2E-7	(female)	1.1	[1.06-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
937	chr19	46158512	46158513	rs8108269	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	19q13.32	GIPR	rs8108269-G	0.31074111685129	4E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
937	chr19	46159985	46159986	rs57601949	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	19q13.32	EML2, GIPR	rs57601949-?	NR	5E-9		0.04172	[0.028-0.056] unit increase novel	Illumina [6108953] (imputed)	N
937	chr19	46160322	46160323	rs55872740	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	19q13.32	GIPR	rs55872740-A	0.7026	5E-6		0.0067	[0.004-0.0094] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
937	chr19	46160659	46160660	rs10404333	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		19q13.32	GIPR	rs10404333-A	NR	1E-6		1.1468282		Affymetrix, Illumina [1918233] (imputed)	N
937	chr19	46161035	46161036	rs10411648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q13.32		rs10411648-A	0.646380339	6E-11		0.06774155	[0.047-0.088] unit increase	Illumina [13134967] (imputed)	N
937	chr19	46162398	46162399	rs12976464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs12976464-A	NR	5E-16		0.0414	[0.031-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46162398	46162399	rs12976464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs12976464-A	NR	3E-16		0.0416	[0.032-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46162398	46162399	rs12976464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs12976464-A	NR	2E-20		0.0471	[0.037-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46162398	46162399	rs12976464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12976464-A	NR	2E-26		0.0543	[0.044-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46164671	46164672	rs62111724	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs62111724-T	0.63405	2E-8		0.0111546	[0.0073-0.015] unit increase	NR [NR]	N
937	chr19	46164765	46164766	rs74174203	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume (MTAG)	19,260 European ancestry individuals	NA	19q13.32	GIPR	rs74174203-G	0.471	2E-7		0.699	[0.44-0.96] unit decrease	Affymetrix [~ 9500000] (imputed)	N
937	chr19	46164765	46164766	rs74174203	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume (MTAG)	19,260 European ancestry individuals	NA	19q13.32	GIPR	rs74174203-G	0.471	2E-7		1.2124	[0.76-1.66] unit decrease	Affymetrix [~ 9500000] (imputed)	N
937	chr19	46165081	46165082	rs112972879	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	19q13.32	GIPR	rs112972879-A	0.361546	1E-11		0.083148636	[0.059-0.107] unit decrease	Affymetrix [7288503] (imputed)	N
937	chr19	46166603	46166604	rs77300780	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	19q13.32	NR	rs77300780-C	0.4604	1E-19		0.0794	[0.062-0.096] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
937	chr19	46166603	46166604	rs77300780	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	19q13.32	GIPR	rs77300780-T	0.54	3E-19		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
937	chr19	46169847	46169848	rs56182403	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19q13.32	Intergenic	rs56182403-?		9E-7		1.11	[1.06-1.15]	Illumina [7645193] (imputed)	N
937	chr19	46169847	46169848	rs56182403	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19q13.32	Intergenic	rs56182403-?		8E-7		2.72	[1.83-4.04]	Illumina [7645193] (imputed)	N
937	chr19	46172277	46172278	rs11671664	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	19q13.32	GIPR	rs11671664-A	0.09	3E-42		0.04	[0.034-0.046] unit decrease	Illumina [6108953] (imputed)	N
937	chr19	46172277	46172278	rs11671664	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	19q13.32	GIPR	rs11671664-A	0.1074	3E-12		0.076	[0.054-0.098] unit increase	Affymetrix, Illumina [NR] (imputed)	N
937	chr19	46172277	46172278	rs11671664	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	19q13.32	GIPR, QPCTL	rs11671664-G	0.49	3E-12		0.0406	[0.029-0.052] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
937	chr19	46172277	46172278	rs11671664	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	19q13.32	GIPR	rs11671664-G	0.45	7E-14		0.046	[0.034-0.058] unit increase	Illumina [2178018] (imputed)	N
937	chr19	46172277	46172278	rs11671664	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	19q13.32	GIPR, QPCTL	rs11671664-G	0.50	6E-14		4.22	[2.73-5.71] % increase	Affymetrix, Illumina [2474474] (imputed)	N
937	chr19	46173210	46173211	rs138572433	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	19q13.32	GIPR	rs138572433-G	0.0976	6E-11		0.03924644	[0.028-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr19	46175045	46175046	rs35560038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.32		rs35560038-T	NR	3E-56		0.0318	[0.028-0.036] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
937	chr19	46175045	46175046	rs35560038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	19q13.32		rs35560038-T	0.619502	2E-47		0.0406455	[0.035-0.046] unit decrease	Illumina [13479924] (imputed)	N
937	chr19	46175045	46175046	rs35560038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19q13.32		rs35560038-T	NR	4E-61		0.0382	[0.034-0.043] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
937	chr19	46175045	46175046	rs35560038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	19q13.32		rs35560038-T	0.619608	6E-52		0.0500166	[0.044-0.056] unit decrease	Illumina [13479178] (imputed)	N
937	chr19	46175045	46175046	rs35560038	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	19q13.32	GIPR	rs35560038-T	0.611	3E-52	(Japanese)	0.054	[0.046-0.062] unit decrease	Illumina [6108953] (imputed)	N
937	chr19	46176404	46176405	rs58304657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19q13.32		rs58304657-C	0.55564823	9E-17		0.07707067	[0.059-0.095] unit increase	Illumina [13429769] (imputed)	N
937	chr19	46178019	46178020	rs139215588	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19q13.32	GIPR	rs139215588-A	0.0011	1E-7		0.148	[0.093-0.203] unit decrease	Illumina [246328]	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	1E-10		0.0260983	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	3E-9		0.0238199	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	2E-10		0.0253206	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	3E-11		0.0266605	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	2E-8		0.0227107	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	1E-9		0.0242313	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	1E-8		0.0235258	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	6E-12		0.0270665	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs2238689-T	0.600605	2E-8		0.0224473	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
937	chr19	46178660	46178661	rs2238689	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.32	GIPR	rs2238689-C	0.4177	5E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
937	chr19	46179042	46179043	rs2238691	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	19q13.32	GIPR, QPCTL	rs2238691-A	NR	3E-9		5.953	NR z score decrease	Illumina [8978282] (imputed)	N
937	chr19	46179042	46179043	rs2238691	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	19q13.32	GIPR	rs2238691-?	NR	5E-11				NR [5554549] (imputed)	N
937	chr19	46179042	46179043	rs2238691	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	19q13.32	GIPR	rs2238691-?	NR	1E-19				NR [5554549] (imputed)	N
937	chr19	46179042	46179043	rs2238691	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	19q13.32	GIPR	rs2238691-?	NR	3E-15				NR [5554549] (imputed)	N
937	chr19	46179042	46179043	rs2238691	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	19q13.32	GIPR	rs2238691-?	NR	2E-32				NR [5554549] (imputed)	N
937	chr19	46179042	46179043	rs2238691	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	19q13.32	GIPR	rs2238691-A	0.212	5E-26		0.0089	[0.0073-0.0105] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
937	chr19	46180183	46180184	rs11672660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	19q13.32		rs11672660-T	NR	5E-62		0.039	[0.034-0.044] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
937	chr19	46180183	46180184	rs11672660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	19q13.32		rs11672660-T	0.230561	1E-10		0.0257259	[0.018-0.034] unit decrease	Illumina [13478792] (imputed)	N
937	chr19	46180183	46180184	rs11672660	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.32	NA	rs11672660-T	0.1871	7E-60		0.0338	[0.03-0.038] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q13.32	NA	rs11672660-T	0.1871	7E-60		0.0338	[0.03-0.038] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	19q13.32	GIPR	rs11672660-A		2E-9		0.0063	unit decrease	Illumina [at least 200000]	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.32	GIPR	rs11672660-C	0.7915	2E-9		0.0321	[0.022-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.32	GIPR	rs11672660-C	0.789	8E-6	(men)	0.0366	[0.021-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs11672660-?	NR	4E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs11672660-?	NR	3E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs11672660-C	0.7915	3E-7	(women)	0.0312	[0.019-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs11672660-C	0.7915	1E-10		0.0305	[0.021-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs11672660-C	0.7867999999999999	3E-9	(EA)	0.0294	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q13.32	NR	rs11672660-T	0.218363659676388	3E-16		0.028914098	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
937	chr19	46180183	46180184	rs11672660	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	GIPR	rs11672660-T	0.218	7E-10	(EA)	0.028	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46180183	46180184	rs11672660	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	GIPR	rs11672660-T	0.218	1E-6	(EA,women)	0.0286	[0.017-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46180413	46180414	rs34783010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs34783010-G	0.805782	3E-9		0.0298148	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
937	chr19	46180413	46180414	rs34783010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs34783010-G	0.805782	2E-8		0.0282134	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
937	chr19	46180413	46180414	rs34783010	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.32		rs34783010-G	0.805782	7E-9		0.0296092	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	6E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	1E-59		0.0493	[0.043-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	3E-10		0.019	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	6E-11		0.0198	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	3E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	7E-10		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	2E-9		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs34783010-T	NR	1E-10		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	19q13.32	MIR642A	rs34783010-G	0.805604	8E-18	(EA)	0.0134311	[0.01-0.016] unit increase	Affymetrix [~ 8800000] (imputed)	N
937	chr19	46180413	46180414	rs34783010	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary potassium to creatinine ratio	218,435 European ancestry individuals	109,178 European ancestry individuals	19q13.32	GIPR	rs34783010-T	0.1933	1E-13		0.026	[0.018-0.034] unit increase	Affymetrix [19420026] (imputed)	N
937	chr19	46180413	46180414	rs34783010	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19q13.32	GIPR	rs34783010-T	0.2026	2E-15		0.1718	[0.13-0.21] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
937	chr19	46180975	46180976	rs143430880	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Body mass index	457,756 European ancestry individuals	NA	19q13.32		rs143430880-?	NR	1E-8		0.130199	[0.085-0.175] unit decrease	NR [9800000] (imputed)	N
937	chr19	46180975	46180976	rs143430880	34210852	Akbari P	2021-07-01	Science	Sequencing of 640,000 exomes identifies <i>GPR75</i> variants associated with protection from obesity.	Body mass index	549,780 European ancestry individuals, 95,846 admixed American ancestry individuals	NA	19q13.32		rs143430880-?	NR	2E-8		0.11	[0.07-0.15] unit decrease	Illumina [NR]	N
937	chr19	46180975	46180976	rs143430880	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19q13.32	GIPR	rs143430880-G	0.0013	3E-8		0.153	[0.098-0.208] unit decrease	Illumina [246328]	N
937	chr19	46181391	46181392	rs1800437	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	19q13.32	GIPR	rs1800437-C	0.2173	5E-26		0.1004	[0.081-0.12] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
937	chr19	46181391	46181392	rs1800437	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs1800437-G	0.7958	3E-10		0.1635144	[0.11-0.22] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
937	chr19	46181391	46181392	rs1800437	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs1800437-G	0.7957	4E-13		0.13819797	[0.1-0.176] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
937	chr19	46181391	46181392	rs1800437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.32	GIPR	rs1800437-C	0.193853	4E-13		0.02041686	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr19	46181391	46181392	rs1800437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.32	GIPR	rs1800437-C	0.193881	1E-12		0.020077841	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr19	46181391	46181392	rs1800437	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19q13.32	GIPR	rs1800437-G	0.80578	3E-11		0.0117899	[0.0083-0.0153] unit increase	Affymetrix [12370749]	N
937	chr19	46181391	46181392	rs1800437	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	19q13.32	GIPR	rs1800437-?	NR	2E-11				NR [5554549] (imputed)	N
937	chr19	46181391	46181392	rs1800437	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	19q13.32	GIPR	rs1800437-?	NR	1E-24				NR [5554549] (imputed)	N
937	chr19	46181391	46181392	rs1800437	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.32	NR	rs1800437-?	NR	7E-7	(female)	0.21451	[0.13-0.3] unit decrease	Affymetrix [7794483] (imputed)	N
937	chr19	46181391	46181392	rs1800437	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.32	NR	rs1800437-?	NR	2E-9		0.15946	[0.11-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
937	chr19	46181391	46181392	rs1800437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19q13.32	NA	rs1800437-C	0.1876	6E-22		0.0209	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19q13.32	NR	rs1800437-C	0.1876	6E-22		0.0209	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q13.32	NA	rs1800437-C	0.1873	3E-59		0.0339	[0.03-0.038] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	19q13.32	GIPR	rs1800437-C	0.218	3E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [247470]	N
937	chr19	46181391	46181392	rs1800437	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	19q13.32	GIPR	rs1800437-C	0.2	7E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [247470]	N
937	chr19	46181391	46181392	rs1800437	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19q13.32	GIPR	rs1800437-G	0.7991	6E-45		0.0306	[0.026-0.035] unit increase	Illumina [246328]	N
937	chr19	46181391	46181392	rs1800437	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Insulin levels in response to oral glucose tolerance test (30 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	19q13.32	GIPR	rs1800437-C	0.258	1E-13		0.081	[0.059-0.103] unit decrease	Illumina [at least 81396]	N
937	chr19	46181391	46181392	rs1800437	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	19q13.32	GIPR	rs1800437-C	0.256	4E-15		0.076	[0.056-0.096] unit decrease	Illumina [at least 81396]	N
937	chr19	46181391	46181392	rs1800437	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	19q13.32	GIPR	rs1800437-C	0.258	2E-17		0.072	[0.056-0.088] unit decrease	Illumina [at least 81396]	N
937	chr19	46181391	46181392	rs1800437	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.32	GIPR	rs1800437-G	0.7873	2E-9	(EA)	0.0333	[0.022-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs1800437-?	NR	5E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs1800437-?	NR	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	GIPR	rs1800437-G	0.7873	2E-6	(EA, women)	0.0298	[0.017-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
937	chr19	46181391	46181392	rs1800437	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	19q13.32	GIPR	rs1800437-G	0.78	3E-14	(Obesity class I)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
937	chr19	46182303	46182304	rs10423928	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetone levels	115,079 European ancestry individuals	NA	19q13.32		rs10423928-T	0.805612	9E-9		0.0298986	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
937	chr19	46182303	46182304	rs10423928	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.32	GIPR	rs10423928-T	0.805697	4E-33		0.0207638	[0.017-0.024] unit increase	Affymetrix [12370749]	N
937	chr19	46182303	46182304	rs10423928	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs10423928-?	NR	4E-43				Affymetrix [~ 8270000] (imputed)	N
937	chr19	46182303	46182304	rs10423928	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19q13.32	NR	rs10423928-A	0.1936	1E-25		0.03277569	[0.027-0.039] unit decrease	Affymetrix [10549349] (imputed)	N
937	chr19	46182303	46182304	rs10423928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.32		rs10423928-?	NR	1E-44				NR [~ 8900000] (imputed)	N
937	chr19	46182303	46182304	rs10423928	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	19q13.32	GIPR	rs10423928-A	0.1983	2E-9		0.1975	[0.13-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
937	chr19	46182303	46182304	rs10423928	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	19q13.32	GIPR	rs10423928-?	NR	2E-10		0.02677	[0.019-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
937	chr19	46182303	46182304	rs10423928	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	19q13.32	GIPR	rs10423928-T	0.77	4E-13	(Obesity class II)	1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
937	chr19	46182303	46182304	rs10423928	20081857	Saxena R	2010-01-17	Nat Genet	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	19q13.32	GIPR	rs10423928-A	NR	3E-12		0.09	[0.07-0.11] mmol/L increase	Affymetrix, Illumina [NR]	N
937	chr19	46182646	46182647	rs147654403	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GIPR	rs147654403-?	NR	1E-9	(female)	2.66895	[NR] unit increase	Affymetrix [NR] (imputed)	N
937	chr19	46183031	46183031	rs555162510	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	19q13.32		rs555162510-A	0.82	2E-6		0.012	mmol/L decrease	NR [NR] (imputed)	N
937	chr19	46183031	46183031	rs555162510	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	19q13.32		rs555162510-A	0.82	8E-23				NR [NR] (imputed)	N
937	chr19	46183031	46183031	rs555162510	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	19q13.32		rs555162510-A	0.82	2E-6		0.01	mmol/L increase	NR [NR] (imputed)	N
937	chr19	46183031	46183031	rs555162510	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	19q13.32		rs555162510-A	0.82	5E-34		0.024	% increase	NR [NR] (imputed)	N
937	chr19	46183032	46183032	rs71338792	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	19q13.32		rs71338792-A	NR	3E-10		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
937	chr19	46183032	46183032	rs71338792	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.32	GIPR	rs71338792-AT	0.23	4E-9	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
937	chr19	46183585	46183586	rs61373376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	19q13.32	NR	rs61373376-T	0.155247	9E-10		0.016919	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
937	chr19	46190267	46190268	rs1964272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	19q13.32		rs1964272-A	NR	2E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
937	chr19	46190267	46190268	rs1964272	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	19q13.32	SNRPD2	rs1964272-G	0.517	3E-8		1.047	[1.030-1.064]	Affymetrix [9149595] (imputed)	N
937	chr19	46193350	46193351	rs11879227	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19q13.32	NR	rs11879227-A	0.816917	1E-9		0.0200588	[0.014-0.026] unit increase	Affymetrix [16585745] (imputed)	N
937	chr19	46195755	46195756	rs7245708	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	19q13.32	FBXO46, QPTCL, EML2, SNRPD2, GIPR	rs7245708-C	0.04	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
937	chr19	46195755	46195756	rs7245708	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	19q13.32	FBXO46, EML2, SNRPD2, GIPR, QPCTL	rs7245708-C	0.04	1E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
937	chr19	46196633	46196634	rs2302593	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	19q13.32	QPCTL	rs2302593-C	0.4974	6E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
937	chr19	46196633	46196634	rs2302593	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	19q13.32	GIPR	rs2302593-C	0.504223	2E-8		0.013031	[0.0085-0.0176] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
937	chr19	46196633	46196634	rs2302593	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	19q13.32	EML2, C19orf83, GIPR, SNRPD2, QPCTL	rs2302593-?	NR	1E-11		0.0163962	[0.012-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
937	chr19	46202171	46202172	rs2287019	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	19q13.32		rs2287019-T	0.1857	1E-8		0.14737572	[0.095-0.2] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
937	chr19	46202171	46202172	rs2287019	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	19q13.32	NR	rs2287019-T	0.1732	1E-19		0.0203	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
937	chr19	46202171	46202172	rs2287019	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q13.32	NR	rs2287019-C	NR	1E-19		0.031	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
937	chr19	46202171	46202172	rs2287019	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	QPCTL	rs2287019-T	0.1869	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
937	chr19	46202171	46202172	rs2287019	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19q13.32	QPCTL	rs2287019-T	0.1869	5E-6		0.0247	[0.014-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
937	chr19	46202171	46202172	rs2287019	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	QPCTL	rs2287019-T	0.1869	7E-9		0.0276	[0.018-0.037] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
937	chr19	46202171	46202172	rs2287019	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	QPCTL	rs2287019-T	0.1869	3E-6	(men)	0.0302	[0.017-0.043] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
937	chr19	46202171	46202172	rs2287019	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	19q13.32	QPCTL	rs2287019-C	NR	8E-11	(additive model)	0.035	[0.025-0.045] unit increase	NR [9288881] (imputed)	N
937	chr19	46202171	46202172	rs2287019	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	QPCTL	rs2287019-C	0.806	2E-18		0.035	[0.028-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
937	chr19	46202171	46202172	rs2287019	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	QPCTL	rs2287019-C	0.804	9E-10	(EA, women)	0.032	[0.022-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
937	chr19	46202171	46202172	rs2287019	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	QPCTL	rs2287019-C	0.804	5E-18	(EA)	0.036	[0.028-0.044] kg/m2 increase	Affymetrix, Illumina [2550021]	N
937	chr19	46202171	46202172	rs2287019	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	QPCTL	rs2287019-C	0.804	3E-12	(EA, men)	0.039	[0.028-0.049] kg/m2 increase	Affymetrix, Illumina [2550021]	N
937	chr19	46202171	46202172	rs2287019	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	QPCTL	rs2287019-T	0.1977	4E-9	(EA)	0.0263	[0.017-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46202171	46202172	rs2287019	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	QPCTL	rs2287019-T	0.1977	2E-7	(EA, men)	0.034	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46202171	46202172	rs2287019	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	QPCTL	rs2287019-T	0.1968	6E-8	(EA, women)	0.0319	[0.02-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46202171	46202172	rs2287019	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	QPCTL	rs2287019-T	0.1968	4E-9	(EA, men)	0.0376	[0.025-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46202171	46202172	rs2287019	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	QPCTL	rs2287019-T	0.1968	2E-14	(EA)	0.0351	[0.026-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
937	chr19	46202171	46202172	rs2287019	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.32	GIPR, QPCTL	rs2287019-C	0.80	2E-16		0.15	[0.09-0.21] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
937	chr19	46202821	46202822	rs7256197	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	QPCTL	rs7256197-G	0.72390625	5E-19	(QPCTL, 8866_53_3)	0.23767559	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
937	chr19	46203082	46203083	rs7256920	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.32	NR	rs7256920-G	0.515161	6E-11		0.0188528	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
937	chr19	46204877	46204878	rs11083779	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs11083779-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
937	chr19	46206261	46206262	rs17850756	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QPCTL	5,354 Icelandic ancestry individuals	NA	19q13.32		rs17850756-A	0.2771	3E-35		0.245177	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
937	chr19	46206261	46206262	rs17850756	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	QPCTL	rs17850756-A	0.328	2E-28	(Glutaminyl-peptide cyclotransferase-like protein, QPCTL.8866.53.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
937	chr19	46207585	46207586	rs78784145	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs78784145-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
937	chr19	46212181	46212182	rs9676912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.32		rs9676912-?	NR	1E-8				NR [~ 8900000] (imputed)	N
937	chr19	46213415	46213416	rs62111731	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial minimum volume	35,658 British ancestry individuals	NA	19q13.32		rs62111731-?	NR	3E-8		0.264	[0.17-0.36] mL/m2 increase	Affymetrix [10600000] (imputed)	N
937	chr19	46219958	46219959	rs11356211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.32	FBXO46	rs11356211-C	0.452534	3E-9		0.013420211	[0.009-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr19	46224970	46224971	rs36120341	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.32	FBXO46	rs36120341-T	0.362	6E-12		0.02565502	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
937	chr19	46227879	46227880	rs57947504	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	19q13.32		rs57947504-C	0.45703	1E-7		0.035517	[0.022-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
937	chr19	46227879	46227880	rs57947504	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	19q13.32		rs57947504-C	0.45703	1E-8		0.038825	[0.025-0.052] unit decrease	Affymetrix [15580782] (imputed)	N
937	chr19	46234154	46234155	rs17878252	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.32		rs17878252-A	0.29	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
937	chr19	46235949	46235950	rs4802272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.32		rs4802272-G	NR	3E-15		0.0104	[0.0079-0.0129] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
937	chr19	46241840	46241841	rs76320948	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.32	AC074212.3	rs76320948-T	0.046	5E-8		5.46	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
937	chr19	46247640	46247641	rs10422883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19q13.32	AC074212.3	rs10422883-G	NR	2E-8		0.0172485	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
937	chr19	46251361	46251362	rs12611358	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	19q13.32		rs12611358-A	0.4235	1E-6		32.791634	z score increase	NR [6814003]	N
937	chr19	46262285	46262286	rs725660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.32	AC074212.3	rs725660-A	0.362	3E-12		0.02579089	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46269075	46269076	rs2014576	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial active emptying fraction	35,658 British ancestry individuals	NA	19q13.32		rs2014576-?	NR	2E-10		0.415	[0.29-0.54] unit increase	Affymetrix [10600000] (imputed)	N
938	chr19	46294032	46294033	rs548419434	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	19q13.32	DMWD	rs548419434-C	0.9983	2E-6		0.6137	[0.36-0.87] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
938	chr19	46294135	46294136	rs72626215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs72626215-A	NR	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
938	chr19	46294135	46294136	rs72626215	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	19q13.32	DMWD	rs72626215-G	0.73	2E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
938	chr19	46295222	46295223	rs73045960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs73045960-A	0.98399	2E-20		0.151605	[0.12-0.18] unit increase	NR [11722792] (imputed)	N
938	chr19	46295222	46295223	rs73045960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs73045960-A	0.98399	5E-19		0.145929	[0.11-0.18] unit increase	NR [11722792] (imputed)	N
938	chr19	46295222	46295223	rs73045960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs73045960-G	NR	2E-39		0.1262	[0.11-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46295222	46295223	rs73045960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs73045960-G	NR	4E-53		0.1477	[0.13-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46295222	46295223	rs73045960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs73045960-G	NR	7E-69		0.1692	[0.15-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46295222	46295223	rs73045960	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	DMWD	rs73045960-A	0.984152	1E-68		0.143974	[0.13-0.16] unit increase	Affymetrix [NR] (imputed)	N
938	chr19	46295222	46295223	rs73045960	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.32	DMWD	rs73045960-?	NR	2E-45		0.1396	[0.12-0.16] unit decrease	Affymetrix [5701386] (imputed)	N
938	chr19	46300847	46300848	rs8107744	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	19q13.32	RSPH6A	rs8107744-C	0.174	1E-7		0.028	[0.018-0.038] unit decrease	Affymetrix [~ 10446505] (imputed)	N
938	chr19	46301455	46301456	rs35226705	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19q13.32		rs35226705-A	0.541	2E-9				Affymetrix [10369434] (imputed)	N
938	chr19	46301455	46301456	rs35226705	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.32		rs35226705-A	0.541	2E-10				Affymetrix [10369434] (imputed)	N
938	chr19	46301478	46301479	rs8108474	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or coronary artery disease (pleiotropy)	12,550 European and unknown ancestry chronic pulmonary obstructive disease cases, 60,801 European and unknown ancestry coronary artery disease cases, 169,872 European and unknown ancestry controls	NA	19q13.32	DMPK, DMWD, FBXO46, FOXA3, LOC388553, QPCTL, RSPH6A, SIX5, SNRPD2, SYMPK	rs8108474-?	NR	1E-8				NR [up to 8619474] (imputed)	N
938	chr19	46302144	46302145	rs111386720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.32	RSPH6A	rs111386720-A	0.09631	7E-10		0.023081483	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr19	46302144	46302145	rs111386720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.32	RSPH6A	rs111386720-A	0.0978	1E-14		0.0466417	[0.035-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46302144	46302145	rs111386720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	19q13.32	RSPH6A	rs111386720-A	0.0977	1E-17		0.05135329	[0.04-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46302144	46302145	rs111386720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	19q13.32	RSPH6A	rs111386720-A	0.0978	2E-16		0.04983657	[0.038-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46302373	46302374	rs7252126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.32		rs7252126-?	NR	1E-34				NR [~ 8900000] (imputed)	N
938	chr19	46306718	46306719	rs34633566	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	19q13.32	RSPH6A	rs34633566-C	0.345721	3E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
938	chr19	46307405	46307406	rs8111071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs8111071-G	NR	8E-16		0.0352	[0.027-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46307405	46307406	rs8111071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.32	NR	rs8111071-G	NR	8E-15		0.0357	[0.027-0.045] unit increase	Affymetrix [9000000] (imputed)	N
938	chr19	46307405	46307406	rs8111071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs8111071-G	NR	4E-11		0.0289	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46307405	46307406	rs8111071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.32	NR	rs8111071-G	NR	5E-16		0.037	[0.028-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46307405	46307406	rs8111071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.32	NR	rs8111071-G	NR	5E-14		0.0345	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46307405	46307406	rs8111071	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	19q13.32	RSHL1	rs8111071-?	0.09	4E-6	(Recessive)	2.01	[1.50-2.70]	Affymetrix [319222]	N
938	chr19	46308914	46308915	rs1972423	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	19q13.32		rs1972423-A	0.644	9E-9				Affymetrix [10369434] (imputed)	N
938	chr19	46312067	46312068	rs139063750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.32	RSPH6A	rs139063750-T	0.095801	3E-16		0.0312369	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr19	46312067	46312068	rs139063750	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.32	NR	rs139063750-T	0.096351	6E-21		0.02926	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
938	chr19	46313104	46313105	rs16980027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs16980027-?	NR	1E-8				NR [~ 8900000] (imputed)	N
938	chr19	46315357	46315358	rs59310453	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.32	RSPH6A	rs59310453-A	0.520654	8E-10		0.013862632	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr19	46317708	46317709	rs74450753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.32	RSPH6A	rs74450753-C	0.089991	2E-12		0.027746469	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
938	chr19	46317708	46317709	rs74450753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs74450753-C	0.0960716	6E-18				Affymetrix, Illumina [24246363] (imputed)	N
938	chr19	46319414	46319415	rs1132645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	19q13.32		rs1132645-C	NR	5E-8		0.0416	[0.027-0.056] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
938	chr19	46320040	46320041	rs74821481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.32		rs74821481-T	NR	5E-12		0.0712	[0.051-0.091] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
938	chr19	46320040	46320041	rs74821481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.32	SYMPK	rs74821481-T	0.354369	6E-21		0.022358498	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
938	chr19	46321506	46321507	rs56848936	28295283	Wang H	2017-03-13	Int J Cancer	Novel colon cancer susceptibility variants identified from a genome-wide association study in African Americans.	Colorectal cancer	1,894 African American ancestry cases, 4,703 African American ancestry controls.	891 African American ancestry cases, 1,150 African American ancestry controls, 1,611 Hispanic ancestry cases, 4,330 Hispanic ancestry controls.	19q13.32	SYMPK	rs56848936-A	0.94	9E-7	(AA)	1.45	[1.25-1.69]	Illumina [10050748] (imputed)	N
938	chr19	46321506	46321507	rs56848936	28295283	Wang H	2017-03-13	Int J Cancer	Novel colon cancer susceptibility variants identified from a genome-wide association study in African Americans.	Colon cancer	1,451 African American ancestry cases, 4,703 African American ancestry controls.	607 African American ancestry cases, 1,146 African American ancestry controls.	19q13.32	SYMPK	rs56848936-A	0.94	5E-7	(right-sided colon tumor)	1.79	[1.43-2.22]	Illumina [10050748] (imputed)	N
938	chr19	46321506	46321507	rs56848936	28295283	Wang H	2017-03-13	Int J Cancer	Novel colon cancer susceptibility variants identified from a genome-wide association study in African Americans.	Colon cancer	1,451 African American ancestry cases, 4,703 African American ancestry controls.	607 African American ancestry cases, 1,146 African American ancestry controls.	19q13.32	SYMPK	rs56848936-A	0.94	2E-8		1.64	[1.37-1.92]	Illumina [10050748] (imputed)	N
938	chr19	46332841	46332842	rs8102876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.32		rs8102876-?	NR	3E-14				NR [~ 8900000] (imputed)	N
938	chr19	46342884	46342885	rs7254067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs7254067-?	NR	4E-9				NR [~ 8900000] (imputed)	N
938	chr19	46346329	46346330	rs8106955	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	19q13.32	DMPK	rs8106955-T	0.3119	7E-7		0.210051	[0.13-0.29] unit decrease	Affymetrix [8590397] (imputed)	N
938	chr19	46350374	46350375	rs62109854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs62109854-?	NR	1E-30				NR [~ 8900000] (imputed)	N
938	chr19	46351836	46351837	rs533172266	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.32	GIPR	rs533172266-T	6.0E-4	4E-6		2.33	[1.63-3.33]	Affymetrix, Illumina [~ 27000000] (imputed)	N
938	chr19	46353825	46353826	rs12709893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.32	NR	rs12709893-T	NR	4E-13		0.0318	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46353825	46353826	rs12709893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.32	NR	rs12709893-T	NR	1E-17		0.0376	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46353825	46353826	rs12709893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs12709893-T	NR	1E-22		0.0432	[0.035-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr19	46359793	46359794	rs76793172	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.32	SYMPK	rs76793172-T	0.0921	2E-17		0.05245408	[0.04-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46365176	46365177	rs113577760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	SYMPK	rs113577760-C	0.09128	2E-15		0.031465985	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr19	46366371	46366374	rs151045853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.32		rs151045853-T	NR	2E-12		0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
938	chr19	46368221	46368222	rs3810328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.32	FOXA3	rs3810328-T	0.092193	2E-15		0.031164605	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr19	46368221	46368222	rs3810328	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.32	FOXA3	rs3810328-T	0.0932	3E-15		0.04876586	[0.037-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	FOXA3	rs8103278-A	0.353753	1E-23		0.024009375	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
938	chr19	46370380	46370381	rs8103278	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19q13.32	FOXA3	rs8103278-G	0.65	3E-12				NR [> 9500000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	19q13.32	FOXA3	rs8103278-G	0.648075	1E-8		1.0365499	1.02382854238668-1.04942948575968]	NR [9572556] (imputed)	N
938	chr19	46370380	46370381	rs8103278	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	19q13.32	FOXA3, SYMPK, IRF2BP1, MYPOP, NANOS2, RSPH6A	rs8103278-G	0.64702	2E-10		1.0433948	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
938	chr19	46370380	46370381	rs8103278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	19q13.32	NR	rs8103278-G	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	19q13.32	NR	rs8103278-G	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	19q13.32	NR	rs8103278-G	NR	2E-6				Affymetrix [~ 8270000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	19q13.32	NR	rs8103278-G	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	19q13.32		rs8103278-?	NR	4E-9				NR [~ 8900000] (imputed)	N
938	chr19	46370380	46370381	rs8103278	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19q13.32	FOXA3, SYMPK	rs8103278-A	0.3373	1E-8		0.0331	[0.022-0.044] unit increase	NR [8041861] (imputed)	N
938	chr19	46373513	46373514	rs11672110	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.32	NR	rs11672110-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
938	chr19	46373513	46373514	rs11672110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.32		rs11672110-?	NR	1E-8				NR [~ 8900000] (imputed)	N
938	chr19	46375778	46375779	rs16980091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	19q13.32		rs16980091-T	0.4548128	1E-8		0.0645257	[0.042-0.087] unit decrease	Illumina [13134967] (imputed)	N
938	chr19	46380324	46380325	rs35318830	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs35318830-T	0.88442	3E-8		0.0350771	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
938	chr19	46380324	46380325	rs35318830	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs35318830-T	0.88442	3E-9		0.0374842	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
938	chr19	46380324	46380325	rs35318830	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	19q13.32	NR	rs35318830-T	0.89	2E-10		1.13	NR	NR [8853336] (imputed)	N
938	chr19	46384553	46384554	rs34851490	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19q13.32	NR	rs34851490-G	0.11626499999999995	2E-23		0.0476696	[0.038-0.057] unit increase	Affymetrix [16577313] (imputed)	N
938	chr19	46384553	46384554	rs34851490	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	19q13.32	IRF2BP1	rs34851490-?		4E-15		1.12	[1.09-1.16]	Affymetrix, Illumina [43000000] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.32	IRF2BP1	rs34255979-T	0.120036	1E-10		0.021818869	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.32	NR	rs34255979-T	0.12028799999999995	2E-108		0.0276807	[0.025-0.03] unit increase	Affymetrix [16582909] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.32	NR	rs34255979-T	0.12104000000000004	8E-52		0.0282398	[0.025-0.032] unit increase	Affymetrix [16585854] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.32	NR	rs34255979-T	0.119498	3E-63		0.0278929	[0.024-0.031] unit increase	Affymetrix [16582621] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.32	NR	rs34255979-T	0.12028799999999995	9E-82		0.0271202	[0.024-0.03] unit increase	Affymetrix [16582965] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.32	NR	rs34255979-T	0.12104000000000004	4E-36		0.0273369	[0.023-0.032] unit increase	Affymetrix [16585866] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.32	NR	rs34255979-T	0.119498	4E-51		0.0272468	[0.024-0.031] unit increase	Affymetrix [16582614] (imputed)	N
938	chr19	46384829	46384830	rs34255979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	19q13.32	NR	rs34255979-C	0.87892	2E-9		0.0227729	[0.015-0.03] unit increase	Affymetrix [16585745] (imputed)	N
938	chr19	46384829	46384830	rs34255979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.32		rs34255979-?	NR	3E-8				NR [~ 8900000] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880638	9E-12		0.0422188	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	4E-11		0.0397509	[0.028-0.052] unit decrease	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	1E-9		0.0376372	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	2E-9		0.0369074	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880582	7E-11		0.0389496	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	3E-10		0.0385634	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	2E-10		0.0390704	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	3E-9		0.0335412	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	5E-10		0.0384475	[0.026-0.051] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880638	2E-12		0.0432143	[0.031-0.055] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880593	7E-13		0.0440172	[0.032-0.056] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	7E-10		0.0379514	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880638	4E-12		0.0424868	[0.031-0.054] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	7E-9		0.0358169	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs34514836-A	0.880592	6E-11		0.0392646	[0.028-0.051] unit increase	NR [11722792] (imputed)	N
938	chr19	46385437	46385438	rs34514836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.32		rs34514836-C	NR	3E-13		0.0266	[0.02-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
938	chr19	46385437	46385438	rs34514836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.32	NR	rs34514836-C	0.119105	2E-17		0.025348	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
938	chr19	46385794	46385795	rs34942359	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	IRF2BP1	rs34942359-C	0.818278	7E-14		0.0190827	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
938	chr19	46385996	46385997	rs11880219	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	IRF2BP1	rs11880219-T	0.818359	5E-17		0.0207494	[0.016-0.026] unit increase	Affymetrix [NR] (imputed)	N
938	chr19	46389758	46389759	rs12976094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.32		rs12976094-?	NR	8E-17				NR [~ 8900000] (imputed)	N
938	chr19	46390454	46390455	rs8112559	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hand	20,901 European ancestry cases, 282,881 European ancestry controls	NA	19q13.32		rs8112559-C	0.8859	7E-11		1.1345091	[1.092181092-1.178477442]	Affymetrix, Illumina [NR] (imputed)	N
938	chr19	46396506	46396507	rs12976390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	19q13.32		rs12976390-T	0.878557	9E-9		0.0354051	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
938	chr19	46396506	46396507	rs12976390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	19q13.32		rs12976390-T	0.878512	7E-10		0.0382485	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
938	chr19	46396609	46396610	rs12976652	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs12976652-C	0.110088	6E-15				Affymetrix, Illumina [20825802] (imputed)	N
939	chr19	46403373	46403374	rs11672020	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs11672020-A	0.605174	2E-13		0.0152563	[0.011-0.019] unit increase	NR [NR]	N
939	chr19	46408017	46408018	rs67967246	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.32	NR	rs67967246-C	0.132046	9E-16		0.0152385	[0.012-0.019] unit increase	Affymetrix [16578495] (imputed)	N
939	chr19	46411719	46411720	rs138805151	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	19q13.32	NR	rs138805151-A	0.034	2E-6		0.04990565	[0.029-0.07] unit increase	Affymetrix [up to 6544775] (imputed)	N
939	chr19	46413407	46413408	rs8112909	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	19q13.32	NR	rs8112909-G		2E-6		0.1426	[0.084-0.201] SD units increase	NR [10700000] (imputed)	N
939	chr19	46415695	46415696	rs9967620	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	19q13.32	GIPR	rs9967620-C	0.9	5E-6		1.07	1.04-1.10	Illumina [12557761] (imputed)	N
939	chr19	46423344	46423345	rs8103039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.32		rs8103039-T	0.786418	7E-10		0.016622858	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
939	chr19	46425651	46425652	rs10422605	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs10422605-?	NR	3E-8				NR [NR]	N
939	chr19	46425694	46425695	rs10423359	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs10423359-?	NR	3E-8				NR [NR]	N
939	chr19	46426781	46426782	rs10410076	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs10410076-?	NR	1E-8				NR [NR]	N
939	chr19	46428695	46428696	rs9304652	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs9304652-?	NR	6E-9				NR [NR]	N
939	chr19	46431010	46431011	rs6509244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.32		rs6509244-G	0.787272	2E-9		0.016419165	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
939	chr19	46433732	46433733	rs10406374	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs10406374-?	NR	3E-8				NR [NR]	N
939	chr19	46433732	46433733	rs10406374	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	19q13.32		rs10406374-?	NR	2E-8				NR [NR]	N
939	chr19	46433732	46433733	rs10406374	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	19q13.32	NR	rs10406374-A	0.086	3E-6		0.029039646	[0.017-0.041] unit decrease	Affymetrix [up to 6544775] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-8		0.0914868	[0.06-0.123] unit decrease	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-8		0.0919505	[0.06-0.124] unit decrease	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-10		0.108679	[0.076-0.142] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-8		0.0936841	[0.061-0.127] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-10		0.105661	[0.073-0.138] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	6E-10		0.104246	[0.071-0.137] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-10		0.104675	[0.073-0.137] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-9		0.101379	[0.068-0.134] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-8		0.0941306	[0.061-0.127] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-8		0.0951041	[0.063-0.128] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-10		0.104039	[0.073-0.136] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	9E-10		0.103606	[0.07-0.137] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-10		0.105906	[0.073-0.139] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	7E-11		0.110029	[0.077-0.143] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	5E-10		0.104831	[0.072-0.138] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	4E-11		0.111605	[0.079-0.145] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	4E-11		0.1094	[0.077-0.142] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-11		0.112832	[0.08-0.146] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	6E-11		0.110107	[0.077-0.143] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-9		0.101646	[0.069-0.135] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-11		0.113126	[0.08-0.146] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	7E-11		0.109676	[0.077-0.143] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-8		0.0888828	[0.058-0.12] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-9		0.0998536	[0.067-0.133] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-10		0.105558	[0.073-0.138] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	3E-9		0.100182	[0.067-0.133] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-11		0.110117	[0.078-0.142] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	5E-8		0.089373	[0.057-0.122] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	8E-10		0.103899	[0.071-0.137] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-8		0.094841	[0.062-0.128] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	4E-8		0.0927122	[0.06-0.126] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	1E-10		0.107404	[0.075-0.14] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	4E-11		0.107978	[0.076-0.14] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.32		rs150262789-C	0.983855	2E-9		0.101874	[0.069-0.135] unit increase	NR [11722792] (imputed)	N
939	chr19	46436563	46436564	rs150262789	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	NOVA2	rs150262789-C	0.98382	2E-31		0.0989791	[0.082-0.116] unit increase	Affymetrix [NR] (imputed)	N
939	chr19	46441949	46441950	rs62111293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.32	NR	rs62111293-C	NR	2E-9		0.0197	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
939	chr19	46469481	46469482	rs9630873	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.32	NOVA2	rs9630873-G	0.512116	2E-8	(90 ms)	0.0322611	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
939	chr19	46480154	46480155	rs1007204	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q13.32	NOVA2, CCDC61	rs1007204-A	0.314	2E-8		0.0102898	[0.0067-0.0139] unit decrease	Affymetrix [11880941] (imputed)	N
939	chr19	46499038	46499039	rs12463001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	19q13.32		rs12463001-?	NR	1E-8				NR [~ 8900000] (imputed)	N
939	chr19	46500860	46500861	rs12608995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs12608995-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
939	chr19	46511547	46511548	rs2287305	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.32	NR	rs2287305-T	0.0122	4E-9	(RAB14)	0.02794	NR unit increase	Illumina [1671387] (imputed)	N
939	chr19	46528940	46528941	rs12980641	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.32	PGLYRP1	rs12980641-C	0.69328125	1E-17	(PGLYRP1, 3329_14_2)	0.23280619	[0.18-0.29] unit increase	Illumina [> 1000000] (imputed)	N
939	chr19	46530388	46530389	rs8102493	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.32	PGLYRP1	rs8102493-C	0.333	5E-17	(Peptidoglycan recognition protein 1, PGLYRP1.3329.14.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr19	46533012	46533013	rs12973391	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PGLYRP1	5,365 Icelandic ancestry individuals	NA	19q13.32		rs12973391-A	0.278	2E-22		0.208057	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
940	chr19	46538821	46538822	rs2005893	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.32	NR	rs2005893-?		3E-6				Illumina [4322238] (imputed)	N
940	chr19	46590474	46590475	rs4802289	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.32	NR	rs4802289-?	NR	9E-6				Affymetrix [NR]	N
940	chr19	46590474	46590475	rs4802289	30004843	Ge S	2018-07-01	OMICS	Type 2 Diabetes Mellitus: Integrative Analysis of Multiomics Data for Biomarker Discovery.	Elevated fasting plasma glucose	76 Chinese ancestry cases, 435 Chinese ancestry controls	NA	19q13.32	CTCF	rs4802289-A	0.06243	5E-6		2.377	[2.022-2.732]	Illumina [69485]	N
940	chr19	46633621	46633622	rs73048030	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	19q13.32	NR	rs73048030-G	0.981842	1E-8		0.377	[0.25-0.51] unit increase	NR [9260588] (imputed)	N
941	chr19	46752540	46752541	rs145725232	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.32	NR	rs145725232-G	0.984189	8E-7		0.0441919	[0.027-0.062] unit increase	Affymetrix [NR] (imputed)	N
941	chr19	46752540	46752541	rs145725232	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.32	IGFL1	rs145725232-G	0.984189	6E-10		0.0549216	[0.038-0.072] unit increase	Affymetrix [NR] (imputed)	N
941	chr19	46754713	46754714	rs7257950	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.32	NR	rs7257950-?	NR	3E-8		5.519	NR z score increase	Illumina [at least 830937] (imputed)	N
941	chr19	46776155	46776156	rs12971298	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	19q13.32	NR	rs12971298-?	NR	7E-6		1.0665	[0.65-1.49] unit increase	Affymetrix [7154205] (imputed)	N
941	chr19	46785697	46785698	rs80095739	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs80095739-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46785697	46785698	rs80095739	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs80095739-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46785697	46785698	rs80095739	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs80095739-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46785697	46785698	rs80095739	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs80095739-?	NR	3E-7	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
941	chr19	46791933	46791934	rs11671710	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671710-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46794534	46794534	rs142815467	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs142815467-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	9E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795066	46795067	rs11671319	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671319-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795108	46795109	rs34128150	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs34128150-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795170	46795171	rs11671360	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11671360-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795245	46795246	rs11667159	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11667159-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46795883	46795884	rs7254961	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7254961-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796032	46796033	rs7256047	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs7256047-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796177	46796178	rs11668290	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs11668290-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796417	46796418	rs73059722	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059722-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796501	46796502	rs73059723	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059723-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	4E-7		0.14	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	9E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796766	46796767	rs73059724	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059724-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	9E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46796767	46796768	rs73059725	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059725-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797193	46797194	rs73059726	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs73059726-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797232	46797233	rs141332218	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs141332218-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797289	46797290	rs117366905	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117366905-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Very large VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	3E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	4E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total triglycerides levels	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Total cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	4E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Small VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	5E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	1E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Medium VLDL particle concentration	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	6E-9	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46797294	46797295	rs117992292	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs117992292-?	NR	2E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46799834	46799835	rs3826796	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in small VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs3826796-?	NR	3E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46799834	46799835	rs3826796	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Triglyceride levels in medium VLDL	8,372 Finnish ancestry males	NA	19q13.32	HIF3A	rs3826796-?	NR	5E-8	(conditioned on 885 SNPs)	0.2	unit decrease	Illumina [15144991] (imputed)	N
942	chr19	46800432	46800433	rs3826795	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	19q13.32	HIF3A	rs3826795-?		3E-6	(Hispanic)	12.8	[NR]	Illumina [936149]	N
942	chr19	46839638	46839639	rs185323516	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	19q13.32	HIF3A, AC007193.10	rs185323516-T	0.9937	7E-6		0.2268	[0.13-0.33] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
942	chr19	46847900	46847901	rs62136099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.32	PPP5C, AC007193.10	rs62136099-T	0.306028	1E-15		0.019167969	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr19	46849445	46849446	rs55665939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.32	PPP5C	rs55665939-G	0.307175	8E-13		0.017091988	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
942	chr19	46849445	46849446	rs55665939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs55665939-G	0.266501	8E-12				Affymetrix, Illumina [23472807] (imputed)	N
942	chr19	46849445	46849446	rs55665939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.32	NR	rs55665939-G	0.305999	3E-14		0.015647	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
942	chr19	46849445	46849446	rs55665939	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs55665939-A	0.691925	1E-12		0.0159905	[0.012-0.02] unit decrease	NR [NR]	N
942	chr19	46849805	46849806	rs4802307	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	19q13.32	CCDC8, PNMAL2, AC011484.1, CALM3, PTGIR, GNG8, PPP5C, PNMAL1, PPP5D1, AC011551.3	rs4802307-?		4E-7				Illumina [9560910] (imputed)	N
942	chr19	46849805	46849806	rs4802307	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19q13.32	PPP5C	rs4802307-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
942	chr19	46849805	46849806	rs4802307	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.32	NR	rs4802307-C	0.7	2E-8	(EA)	1.0630091		Affymetrix, Illumina [~ 9000000] (imputed)	N
942	chr19	46849805	46849806	rs4802307	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.32	NR	rs4802307-C	0.7	9E-12	(EA)	1.0939962	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
942	chr19	46849805	46849806	rs4802307	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	19q13.32	intergenic	rs4802307-G	0.706	2E-10		1.099	[1.06-1.139]	Affymetrix, Illumina [1230000] (imputed)	N
942	chr19	46854740	46854741	rs534666677	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	19q13.32	PPP5C	rs534666677-T	5.6448E-4	3E-8		5.523	z score increase	Illumina [18485882] (imputed)	N
942	chr19	46868384	46868385	rs62136106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs62136106-?	NR	9E-9				NR [~ 8900000] (imputed)	N
942	chr19	46869630	46869631	rs2009569	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	19q13.32	NR	rs2009569-T	0.0194	9E-7		0.2265	[0.14-0.32] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
942	chr19	46878628	46878629	rs4803936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.32	PPP5C	rs4803936-A	0.30539	1E-9		0.014666765	[0.01-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr19	46878628	46878629	rs4803936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	PPP5C	rs4803936-A	0.305492	1E-10		0.015564016	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr19	46878628	46878629	rs4803936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs4803936-A	0.250681	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
942	chr19	46878628	46878629	rs4803936	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.32	NR	rs4803936-A	0.304543	4E-12		0.013882	[0.01-0.0178] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
942	chr19	46878628	46878629	rs4803936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs4803936-?	NR	3E-9				NR [~ 8900000] (imputed)	N
942	chr19	46878988	46878989	rs4239538	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.32	PPP5C	rs4239538-G	0.691295	8E-14		0.0160763	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
942	chr19	46892167	46892168	rs8106745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19q13.32		rs8106745-?	NR	1E-9				NR [~ 8900000] (imputed)	N
942	chr19	46896216	46896217	rs3764613	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19q13.32		rs3764613-G	0.581125	7E-73		1.0802951	[1.08-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
942	chr19	46904799	46904800	rs923621	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	19q13.32		rs923621-A	0.42854000000000003	8E-23		1.0431972	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
943	chr19	46953381	46953382	rs10409958	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	19q13.32	PNMAL1, PPP5D1, CCDC8, PNMAL2	rs10409958-A	NR	3E-6	(sleep offset, weekdays)	0.5573	[0.32-0.79] unit increase	Affymetrix [7141204] (imputed)	N
943	chr19	46967911	46967912	rs10403206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs10403206-?	NR	4E-17				NR [~ 8900000] (imputed)	N
943	chr19	46974002	46974003	rs7248888	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	19q13.32	PNMAL1	rs7248888-?	0.93-0.97	5E-6	(Fruit)	1.37	[1.19-1.56]	Affymetrix, Illumina [> 2700000] (imputed)	N
943	chr19	47003905	47003906	rs11670534	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	19q13.32	PPP5D1	rs11670534-C	0.8386	5E-10		1.0309699		Affymetrix [11880941] (imputed)	N
943	chr19	47003905	47003906	rs11670534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	19q13.32		rs11670534-?	NR	6E-8				NR [~ 8900000] (imputed)	N
943	chr19	47048564	47048565	rs1975190	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.32	NR	rs1975190-C	0.158385	2E-8		0.0171703	[0.011-0.023] unit decrease	NR [NR]	N
944	chr19	47067475	47067476	rs4803982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19q13.32		rs4803982-?	NR	6E-9				NR [~ 8900000] (imputed)	N
944	chr19	47072394	47072395	rs4435363	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	19q13.32	PPP5D1	rs4435363-G	0.2	4E-9	(EA)	93.0	[61.64-124.36] ms x uV decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
944	chr19	47072394	47072395	rs4435363	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave terminal force	33,955 European ancestry individuals, 6,778 African individuals	NA	19q13.32	PPP5D1	rs4435363-G	0.2	1E-9		96.0	[64.64-127.36] ms x uV decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
944	chr19	47072394	47072395	rs4435363	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	19q13.32	AC011551.3, PPP5D1	rs4435363-G	0.2029	1E-12		0.03121069	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
944	chr19	47098426	47098427	rs7260181	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		19q13.32	Intergenic	rs7260181-T	0.57	8E-6	(liability model)	0.07	[0.031-0.109] unit decrease	NR [19725427] (imputed)	N
944	chr19	47100564	47100565	rs62136949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs62136949-?	NR	5E-8				NR [~ 8900000] (imputed)	N
944	chr19	47104225	47104226	rs117306460	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.32	NR	rs117306460-C	0.01742	2E-8	(CYB5R3)	0.08748	NR unit increase	Illumina [1671387] (imputed)	N
944	chr19	47104534	47104535	rs150954567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.32	CALM3	rs150954567-A	0.191908	2E-33		0.03462756	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
944	chr19	47119909	47119910	rs11083840	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.32	NR	rs11083840-C	0.4025	3E-8	(EA)	1.0715772	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
944	chr19	47119909	47119910	rs11083840	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.32	NR	rs11083840-C	0.4025	2E-6	(EA)	1.0484828	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
944	chr19	47123782	47123783	rs1126510	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	19q13.32	CALM3	rs1126510-G	0.363	2E-9		1.075	[1.037-1.113]	Affymetrix, Illumina [1230000] (imputed)	N
944	chr19	47168128	47168129	rs314669	27001270	Vishal M	2016-03-22	BMC Med Genomics	Genetic association and stress mediated down-regulation in trabecular meshwork implicates MPP7 as a novel candidate gene in primary open angle glaucoma.	Glaucoma (primary open-angle)	347 Indian ancestry cases, 354 Indian ancestry controls	319 Indian ancestry cases, 297 Indian ancestry controls	19q13.32	Intergenic	rs314669-?		2E-6				Illumina [521873]	N
944	chr19	47176751	47176752	rs874460	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	19q13.32	PRKD2, STRN4	rs874460-C	NR	3E-8		1.24	[1.15-1.34]	Affymetrix, Illumina [> 10000000] (imputed)	N
945	chr19	47192940	47192941	rs75185364	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs75185364-C	0.976	1E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47194885	47194886	rs114855972	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs114855972-A	0.976	1E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47195254	47195255	rs147565295	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs147565295-A	0.976	1E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47196078	47196079	rs314675	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.32	PRKD2	rs314675-T	0.86263	1E-14		0.0208319	[0.016-0.026] unit increase	NR [13737936] (imputed)	N
945	chr19	47196078	47196079	rs314675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.32		rs314675-?	NR	7E-16				NR [~ 8900000] (imputed)	N
945	chr19	47196078	47196079	rs314675	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.32		rs314675-?	NR	1E-13		0.0219674	[0.016-0.028] unit increase	Affymetrix [20259828] (imputed)	N
945	chr19	47196645	47196646	rs138814219	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs138814219-T	0.976	7E-7	(AA)	0.336	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47204440	47204441	rs139399000	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs139399000-G	0.977	1E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47205706	47205707	rs60652743	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	19q13.32	PRKD2	rs60652743-A	0.84	2E-12		1.28	[1.20-1.37]	Affymetrix, Illumina [7891602] (imputed)	N
945	chr19	47205706	47205707	rs60652743	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	19q13.32	PRKD2, STRN4	rs60652743-A	0.836	7E-10		1.25	[1.16-1.34]	Illumina [140322] (imputed)	N
945	chr19	47205759	47205760	rs10411262	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	19q13.32	NR	rs10411262-?	NR	6E-6		0.0371	[0.021-0.053] unit increase	Illumina [at least 560000] (imputed)	N
945	chr19	47207653	47207654	rs11083846	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	19q13.32	PRKD2, STRN4	rs11083846-A	0.22	4E-9		1.35	[1.22-1.49]	Illumina [345665]	N
945	chr19	47208381	47208382	rs115824942	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs115824942-T	0.977	1E-6	(AA)	0.329	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47208480	47208481	rs425105	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	19q13.32	MIR320E, PRKD2	rs425105-T	0.8384	8E-6		0.0385	[0.022-0.055] unit decrease	NR [8041861] (imputed)	N
945	chr19	47208480	47208481	rs425105	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	19q13.32	intergenic	rs425105-?	0.84	3E-11		1.16	[1.08-1.27]	Affymetrix, Illumina [841622] (imputed)	N
945	chr19	47213127	47213127	rs200395517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.32		rs200395517-AT	NR	6E-14		0.0256	[0.019-0.032] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
945	chr19	47213310	47213311	rs151060619	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.32	PRKD2	rs151060619-A	0.976	1E-6	(AA)	0.322	NR unit increase	Illumina [NR] (imputed)	N
945	chr19	47214995	47214996	rs1644350	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19q13.32		rs1644350-A	0.15	2E-9		5.97	z score increase	Affymetrix [9061022] (imputed)	N
945	chr19	47214995	47214996	rs1644350	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q13.32	NR	rs1644350-A	0.1333	1E-12				NR [9056863] (imputed)	N
945	chr19	47219121	47219122	rs402072	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	19q13.32	Intergenic	rs402072-T	0.84	5E-8		1.1494253		Illumina [135870]	N
945	chr19	47220338	47220338	rs537848612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	PRKD2	rs537848612-TCGG	0.116654	3E-10		0.021974437	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr19	47221556	47221557	rs313839	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.32	PRKD2, STRN4	rs313839-G	0.16	6E-13		7.21	z-score increase	Affymetrix [4314223] (imputed)	N
945	chr19	47268977	47268978	rs1693997	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.32	NR	rs1693997-A	0.441	3E-9		0.00645456	[0.0043-0.0086] unit increase	NR [9732723] (imputed)	N
945	chr19	47274331	47274332	rs75206071	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.32	NR	rs75206071-A	NR	1E-9		0.0204	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
945	chr19	47278937	47278938	rs1060043	25590795	Yazar S	2015-04-01	JAMA Ophthalmol	Genetic and environmental factors in conjunctival UV autofluorescence.	Conjunctival UV autofluorescence (CUVAF)	1,251 European ancestry individuals	NA	19q13.32	SLC1A5	rs1060043-?		3E-8		11.34	[7.32-15.36] unit increase	Illumina [5003381] (imputed)	N
945	chr19	47283254	47283255	rs112330399	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19q13.32		rs112330399-G	0.777	1E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
945	chr19	47288149	47288150	rs8105903	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.32	SLC1A5	rs8105903-A	0.5496	2E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix [18391927] (imputed)	N
945	chr19	47295357	47295358	rs16980741	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.32	AP2S1	rs16980741-?	NR	3E-8		0.0388	[0.026-0.051] unit decrease	Affymetrix [5701386] (imputed)	N
945	chr19	47298000	47298001	rs57753335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs57753335-?	NR	4E-13				NR [~ 8900000] (imputed)	N
946	chr19	47323383	47323384	rs6509294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.32	SLC1A5	rs6509294-?	NR	7E-6	(guanosine monophosphate)	0.3397318	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
946	chr19	47347451	47347452	rs112634057	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	19q13.32	AP2S1	rs112634057-A	0.1594	6E-6		0.0448	[0.025-0.064] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
946	chr19	47352258	47352259	rs1644331	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	19q13.32	AP2S1, ARHGAP35, NPAS1	rs1644331-?		2E-8				NR [7428630] (imputed)	N
946	chr19	47358678	47358679	rs3848531	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.32		rs3848531-A	0.3	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
946	chr19	47384498	47384499	rs311360	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	19q13.32	AP2S1	rs311360-G	NR	1E-5		1.026	[1.015- 1.038]	Illumina [6740241] (imputed)	N
946	chr19	47414985	47414986	rs311372	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	19q13.32	intergenic	rs311372-?	NR	9E-6				Illumina [655023]	N
946	chr19	47435470	47435471	rs547445211	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.32	ARHGAP35	rs547445211-?		2E-8		1.9112	[1.25-2.58] unit decrease	Illumina [31500000] (imputed)	N
947	chr19	47463771	47463772	rs8102896	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	19q13.32		rs8102896-G	0.27	5E-8		5.47	z score increase	Affymetrix [9061022] (imputed)	N
947	chr19	47481681	47481682	rs73059314	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	19q13.32	ARHGAP35	rs73059314-A	0.1514	9E-6		0.039	[0.022-0.056] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
947	chr19	47483921	47483922	rs10164289	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	19q13.32	GRLF1	rs10164289-?		7E-6				NR [~ 3000000] (imputed)	N
947	chr19	47494944	47494945	rs3786711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.32		rs3786711-?	NR	8E-8				NR [~ 8900000] (imputed)	N
947	chr19	47545718	47545719	rs4577206	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs4577206-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
947	chr19	47548677	47548678	rs889169	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	19q13.32	NR	rs889169-G	0.390656	7E-9		0.037174273	[0.025-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
947	chr19	47548677	47548678	rs889169	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	19q13.32		rs889169-?	NR	5E-9				NR [7857346] (imputed)	N
947	chr19	47548677	47548678	rs889169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19q13.32	Intergenic	rs889169-A	0.6223	6E-9		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
947	chr19	47548677	47548678	rs889169	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19q13.32	NR	rs889169-A	NR	3E-8		5.557	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
947	chr19	47548677	47548678	rs889169	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.32	NR	rs889169-?	NR	5E-8		5.449	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
947	chr19	47549790	47549791	rs1862499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q13.32	Intergenic	rs1862499-A	0.377	6E-9	(MTAG)	0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
947	chr19	47556375	47556375	rs61141867	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	19q13.32	NPAS1, TMEM160	rs61141867-T	0.253635	1E-11		0.01842	[0.013-0.024] unit decrease	Affymetrix [19400838] (imputed)	N
947	chr19	47557912	47557913	rs137990214	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	19q13.32	intergenic	rs137990214-A	NR	5E-7	(AA)			Illumina [up to 11995908] (imputed)	N
947	chr19	47557970	47557971	rs112551143	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q13.32	NA	rs112551143-A	0.2531	7E-26		0.0233	[0.019-0.028] unit decrease	NR [~ 27400000] (imputed)	N
947	chr19	47559272	47559273	rs12971970	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19q13.32	ZC3H4	rs12971970-T	0.268805	8E-10	(females)	0.02086	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
947	chr19	47559272	47559273	rs12971970	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19q13.32	ZC3H4	rs12971970-T	0.268805	2E-14		0.01846	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
947	chr19	47559272	47559273	rs12971970	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	19q13.32	ZC3H4	rs12971970-T	0.268805	1E-8	(males)	0.01535	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
947	chr19	47562508	47562509	rs7259070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.32	ZC3H4	rs7259070-T	0.404152	5E-13		0.0145609	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
947	chr19	47562508	47562509	rs7259070	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	19q13.32	NA	rs7259070-T	0.4126	2E-26		0.0209	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
947	chr19	47563417	47563418	rs12150914	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.32	ZC3H4	rs12150914-T	0.404855	2E-14		0.0150135	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
947	chr19	47563531	47563532	rs12151152	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs12151152-?	NR	2E-29				Affymetrix [~ 8270000] (imputed)	N
947	chr19	47563531	47563532	rs12151152	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.32	NA	rs12151152-A	0.4087	7E-27		0.021	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
947	chr19	47564642	47564643	rs11671304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.32		rs11671304-T	NR	1E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
947	chr19	47564642	47564643	rs11671304	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19q13.32	NR	rs11671304-C	0.329113	4E-8		0.0164771	[0.01-0.023] unit increase	Affymetrix [16577313] (imputed)	N
947	chr19	47564642	47564643	rs11671304	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19q13.32	TMEM160	rs11671304-T	0.6729	4E-13		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
947	chr19	47569002	47569003	rs3810291	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	19q13.32		rs3810291-A	NR	3E-9		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	1E-7		0.011	mmol/L increase	NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	6E-13		0.014	nmol/L decrease	NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	1E-19				NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	4E-15		0.015	mmol/L decrease	NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	1E-13		0.012	% increase	NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	19q13.32		rs3810291-A	0.68	2E-6		0.01	U/L decrease	NR [NR] (imputed)	N
947	chr19	47569002	47569003	rs3810291	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	19q13.32		rs3810291-A	0.6716	2E-9		0.09152204	[0.062-0.121] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
947	chr19	47569002	47569003	rs3810291	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Type 2 diabetes (time to event)	18,557 British ancestry cases, 264,314 British ancestry controls	NA	19q13.32	ZC3H4	rs3810291-?	NR	8E-8				NR [~ 24000000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19q13.32	ZC3H4	rs3810291-G	0.324953	6E-23		0.0147393	[0.012-0.018] unit decrease	Affymetrix [12370749]	N
947	chr19	47569002	47569003	rs3810291	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.32	ZC3H4	rs3810291-G	0.324953	4E-27		0.0157949	[0.013-0.019] unit decrease	Affymetrix [12370749]	N
947	chr19	47569002	47569003	rs3810291	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	19q13.32	NR	rs3810291-A	0.676542	2E-9		0.0436445	[0.029-0.058] unit increase	Affymetrix [17914406] (imputed)	N
947	chr19	47569002	47569003	rs3810291	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	19q13.32	NR	rs3810291-G	0.3228	4E-16		0.021569509	[0.016-0.027] unit decrease	Affymetrix [10549349] (imputed)	N
947	chr19	47569002	47569003	rs3810291	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	19q13.32	ZC3H4	rs3810291-A	0.6772	7E-9		0.0092	[0.0061-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.32	NR	rs3810291-A	0.67	2E-8		0.00656934	[0.0043-0.0089] unit increase	NR [9732723] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19q13.32		rs3810291-?	NR	3E-19				NR [~ 8900000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.32		rs3810291-?	NR	3E-43				NR [~ 8900000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.32	NR	rs3810291-?	NR	5E-10		0.14536	[0.099-0.191] unit increase	Affymetrix [7794483] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.32	NR	rs3810291-?	NR	3E-7	(female)	0.13155	[0.081-0.182] unit increase	Affymetrix [7794483] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	19q13.32	ZC3H4	rs3810291-A	0.673	9E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	19q13.32	NR	rs3810291-G	NR	8E-19		0.026	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	19q13.32	ZC3H4	rs3810291-A	0.6768	3E-7		0.0352	[0.022-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6372	5E-8		0.0245	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6372	2E-9		0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	4E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	1E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	2E-6	(women)	0.0495	[0.029-0.07] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	1E-6		0.0371	[0.022-0.052] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	4E-7	(women)	0.0269	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	2E-9		0.0247	[0.017-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	1E-9	(women)	0.0292	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	19q13.32	ZC3H4	rs3810291-A	0.6246	1E-12		0.0259	[0.019-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	19q13.32	ZC3H4	rs3810291-A	NR	2E-10	(additive model)	0.028	[0.02-0.036] unit increase	NR [9288881] (imputed)	N
947	chr19	47569002	47569003	rs3810291	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	19q13.32	NR	rs3810291-A	0.664069524669446	1E-19		0.02794018	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	ZC3H4	rs3810291-A	0.667	7E-9	(EA, men)	0.028	[0.018-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
947	chr19	47569002	47569003	rs3810291	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	ZC3H4	rs3810291-A	0.666	5E-15	(EA)	0.028	[0.021-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
947	chr19	47569002	47569003	rs3810291	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	ZC3H4	rs3810291-A	0.666	3E-10	(EA, women)	0.03	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
947	chr19	47569002	47569003	rs3810291	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	19q13.32	ZC3H4	rs3810291-A	0.654	6E-16		0.029	[0.022-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
947	chr19	47569002	47569003	rs3810291	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	ZC3H4	rs3810291-A	0.666	8E-8	(EA, women)	0.0278	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
947	chr19	47569002	47569003	rs3810291	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	ZC3H4	rs3810291-A	0.666	2E-10	(EA)	0.0259	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
947	chr19	47569002	47569003	rs3810291	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	19q13.32	ZC3H4	rs3810291-A	0.6663	2E-8	(EA)	0.023	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
947	chr19	47569002	47569003	rs3810291	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	19q13.32	TMEM160	rs3810291-A	0.24	9E-7		0.0333	[0.02-0.047] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
947	chr19	47569002	47569003	rs3810291	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	19q13.32	TMEM160, ZC3H4	rs3810291-A	0.67	2E-12		0.09	[0.05-0.13] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
947	chr19	47571937	47571938	rs1532127	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	19q13.32	ZC3H4	rs1532127-G	0.314222	2E-11		0.0472097	[0.033-0.061] unit decrease	Affymetrix [9463307] (imputed)	N
947	chr19	47572986	47572987	rs2241388	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.32	ZC3H4	rs2241388-T		3E-15		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
947	chr19	47572986	47572987	rs2241388	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.32	NR	rs2241388-T	0.278826	3E-14		0.0108006	[0.008-0.0136] unit increase	Affymetrix [16578495] (imputed)	N
947	chr19	47572986	47572987	rs2241388	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.32	ZC3H4	rs2241388-C	0.7223	3E-10		0.02488376	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
947	chr19	47572986	47572987	rs2241388	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.32	ZC3H4	rs2241388-C	0.7223	3E-11		0.02632552	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
947	chr19	47573526	47573527	rs62136856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.32		rs62136856-G	NR	2E-13		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
947	chr19	47575715	47575716	rs3745618	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.32	ZC3H4	rs3745618-A	0.06	2E-6	(Free T3 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
948	chr19	47580184	47580185	rs11667244	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	19q13.32	NR	rs11667244-G	0.7024	2E-12		0.0354	[0.026-0.045] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
948	chr19	47588324	47588325	rs2287842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs2287842-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
948	chr19	47589894	47589895	rs2303108	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	19q13.32	ZC3H4	rs2303108-C	NR	9E-13		0.014974208	[0.011-0.019] unit decrease	Illumina [242289]	N
948	chr19	47589894	47589895	rs2303108	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	19q13.32	ZC3H4	rs2303108-C	0.7039	1E-6	(EA)	0.022	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47589894	47589895	rs2303108	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs2303108-?	NR	8E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47589894	47589895	rs2303108	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs2303108-?	NR	1E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47589894	47589895	rs2303108	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs2303108-C	0.7039	3E-9	(EA)	0.0246	[0.017-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47589894	47589895	rs2303108	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs2303108-C	0.7039	3E-7	(EA, women)	0.0272	[0.017-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47596130	47596131	rs113125564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.32	ZC3H4	rs113125564-C	0.044982	2E-10		0.036247693	[0.025-0.047] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47596130	47596131	rs113125564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19q13.32	ZC3H4	rs113125564-C	0.0446	2E-13		0.06323484	[0.046-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr19	47597101	47597102	rs10408163	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q13.32	NR	rs10408163-C	0.6016	1E-13		0.0319	[0.023-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
948	chr19	47597101	47597102	rs10408163	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	19q13.32	ZC3H4	rs10408163-?	NR	9E-9				NR [1800000]	N
948	chr19	47597101	47597102	rs10408163	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs10408163-?	NR	5E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47597101	47597102	rs10408163	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs10408163-?	NR	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47597101	47597102	rs10408163	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	19q13.32	ZC3H4	rs10408163-C	0.6711	7E-8	(women)	0.0268	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
948	chr19	47600440	47600441	rs8101149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	19q13.32		rs8101149-A	NR	7E-9		0.0431	[0.029-0.058] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
948	chr19	47600440	47600441	rs8101149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs8101149-A	0.601849	3E-25				Affymetrix, Illumina [24653286] (imputed)	N
948	chr19	47600440	47600441	rs8101149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.32	NR	rs8101149-A	0.70246	9E-29		0.02303	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
948	chr19	47600592	47600593	rs17716478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs17716478-T	0.076121	4E-23				Affymetrix, Illumina [24332387] (imputed)	N
948	chr19	47600592	47600593	rs17716478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.32	NR	rs17716478-T	0.078438	2E-26		0.03767	[0.031-0.045] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
948	chr19	47600592	47600593	rs17716478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.32		rs17716478-?	NR	9E-18				NR [~ 8900000] (imputed)	N
948	chr19	47606766	47606767	rs145775149	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	19q13.32	NR	rs145775149-G		5E-6		0.5645	[0.32-0.81] SD units increase	NR [10700000] (imputed)	N
948	chr19	47609222	47609223	rs4804025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs4804025-A	0.604231	6E-30				Affymetrix, Illumina [24558453] (imputed)	N
948	chr19	47609222	47609223	rs4804025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.32	NR	rs4804025-A	0.702681	3E-33		0.024883	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
948	chr19	47614659	47614660	rs12973221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.32	ZC3H4	rs12973221-A	0.09738	2E-12		0.026650997	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47614659	47614660	rs12973221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.32	ZC3H4	rs12973221-A	0.0973699999999999	6E-10		0.023302762	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47614659	47614660	rs12973221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.32	ZC3H4	rs12973221-A	0.0973579999999999	5E-10		0.023422522	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47614659	47614660	rs12973221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs12973221-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
948	chr19	47614659	47614660	rs12973221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.32		rs12973221-?	NR	3E-9				NR [~ 8900000] (imputed)	N
948	chr19	47615834	47615835	rs62135070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs62135070-?	NR	3E-8				NR [~ 8900000] (imputed)	N
948	chr19	47623080	47623080	rs568754328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.32		rs568754328-CT	NR	5E-16		0.0177	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
948	chr19	47623080	47623080	rs568754328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.32	SAE1	rs568754328-CT	0.70344	2E-25		0.025711706	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr19	47623080	47623080	rs568754328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.32	SAE1	rs568754328-CT	0.703443	1E-27		0.026913624	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr19	47627410	47627410	rs200204703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.32		rs200204703-TA	NR	4E-15		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
948	chr19	47629263	47629264	rs309190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.32	NR	rs309190-C	0.89401	2E-16		0.026358	[0.02-0.033] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
948	chr19	47629263	47629264	rs309190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19q13.32	SAE1	rs309190-C	0.8945	4E-9		0.03460707	[0.023-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
948	chr19	47634312	47634313	rs177918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.32	SAE1	rs177918-G	0.894038	2E-17		0.030893028	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr19	47634312	47634313	rs177918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.32	SAE1	rs177918-T	0.105997	1E-12		0.02571307	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr19	47635283	47635284	rs309185	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs309185-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
948	chr19	47638538	47638539	rs11083862	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19q13.32	SAE1	rs11083862-A	NR	2E-9		1.0769	NR	Affymetrix, Illumina [8278136] (imputed)	N
948	chr19	47660976	47660977	rs117516426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs117516426-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
948	chr19	47661492	47661493	rs307896	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	19q13.32	SAE1	rs307896-?	NR	1E-6			[1.0574-1.1396]	NR [2487152]	N
948	chr19	47661492	47661493	rs307896	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.32	SAE1	rs307896-G	NR	5E-7		1.09	[1.08-1.11]	Illumina [465434]	N
948	chr19	47664454	47664454	rs398034853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.32	SAE1	rs398034853-GT	0.771249	4E-12		0.019499343	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47679797	47679798	rs466477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.32	SAE1	rs466477-C	0.742929	3E-13		0.0183977	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
948	chr19	47689696	47689697	rs7251708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.32		rs7251708-A	NR	4E-20		0.0219	[0.017-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
948	chr19	47689920	47689921	rs3745621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19q13.32	SAE1	rs3745621-G	0.2587	2E-16		0.03376649	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
948	chr19	47695750	47695751	rs56179616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs56179616-T	0.258696	3E-45				Affymetrix, Illumina [23472807] (imputed)	N
948	chr19	47695750	47695751	rs56179616	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.32	NR	rs56179616-T	0.258737	6E-47		0.031193	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
948	chr19	47696335	47696336	rs10423223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.32	SAE1	rs10423223-G	0.260308	3E-14		0.020422136	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
948	chr19	47696335	47696336	rs10423223	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.32	SAE1	rs10423223-G	0.260264	2E-37		0.031999685	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
949	chr19	47715835	47715837	rs774224295	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.32	NR	rs774224295-T	0.680919	1E-10		0.0187213	[0.013-0.025] unit increase	Affymetrix [16580851] (imputed)	N
949	chr19	47724563	47724564	rs45474992	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.32	BBC3	rs45474992-T	0.0362	2E-33		0.0617	[0.052-0.072] unit decrease	Affymetrix [18391927] (imputed)	N
949	chr19	47724563	47724564	rs45474992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs45474992-T	0.0337938	1E-21				Affymetrix, Illumina [24649327] (imputed)	N
949	chr19	47724563	47724564	rs45474992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.32	NR	rs45474992-T	0.034588	2E-23		0.051948	[0.042-0.062] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
949	chr19	47724563	47724564	rs45474992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs45474992-T	0.0341981	1E-14				Affymetrix, Illumina [23467995] (imputed)	N
949	chr19	47724563	47724564	rs45474992	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	19q13.32	NR	rs45474992-T	0.0364091	8E-14		0.137196	[0.1-0.17] unit decrease	Affymetrix [17914406] (imputed)	N
949	chr19	47724563	47724564	rs45474992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.32		rs45474992-?	NR	3E-14				NR [~ 8900000] (imputed)	N
949	chr19	47724563	47724564	rs45474992	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.32	BBC3	rs45474992-T	0.0366	3E-9		0.05763828	[0.039-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
949	chr19	47738922	47738922	rs562893740	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.32	BBC3	rs562893740-CT	0.460624	4E-9		0.014148291	[0.0094-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
949	chr19	47744169	47744170	rs142998071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.32	NR	rs142998071-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
949	chr19	47756289	47756290	rs4804033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.32	CCDC9	rs4804033-G	0.436355	4E-9		0.013108596	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
949	chr19	47766306	47766307	rs34447435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.32	NR	rs34447435-D	0.419768	4E-11		0.013705	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
949	chr19	47767642	47767643	rs4804036	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	19q13.32	NR	rs4804036-A	NR	5E-6				Affymetrix [723305]	N
949	chr19	47767642	47767643	rs4804036	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	19q13.32	NR	rs4804036-A	NR	2E-8	(EA)	0.05	NR unit increase	Affymetrix [723305]	N
949	chr19	47769241	47769242	rs10407892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.32		rs10407892-C	NR	2E-11		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
949	chr19	47769241	47769242	rs10407892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.32		rs10407892-C	NR	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
949	chr19	47772180	47772181	rs7254560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.32	NR	rs7254560-A	0.471835	8E-14				Affymetrix, Illumina [19872809] (imputed)	N
949	chr19	47773785	47773786	rs888838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.32		rs888838-?	NR	2E-9				NR [~ 8900000] (imputed)	N
949	chr19	47776011	47776012	rs56204511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.32		rs56204511-?	NR	6E-15				NR [~ 8900000] (imputed)	N
949	chr19	47777660	47777661	rs3745607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.32		rs3745607-T	NR	7E-9		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
949	chr19	47783865	47783866	rs60023081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.32		rs60023081-?	NR	3E-8				NR [~ 8900000] (imputed)	N
949	chr19	47796799	47796800	rs7254232	25008200	Feng P	2014-07-09	BMC Oral Health	Genome wide association scan for chronic periodontitis implicates novel locus.	Chronic periodontitis	63 European ancestry cases, 543 European ancestry controls, up to 32 African American cases, up to 158 African American controls, up to 4 cases, up to 66 controls	495 European ancestry cases, 981 European ancestry controls, 118 African ancestry cases, 225 African ancestry controls	19q13.32	C5AR1	rs7254232-?	NR	3E-6				Illumina [473514]	N
949	chr19	47798479	47798480	rs146522229	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	19q13.32	NR	rs146522229-C		4E-7		0.5976	[0.37-0.83] SD units increase	NR [10700000] (imputed)	N
950	chr19	47914182	47914183	rs144211280	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	19q13.32	NR	rs144211280-T	0.006648	5E-6		0.8524	[0.49-1.22] unit increase	Illumina [10677593] (imputed)	N
950	chr19	47949351	47949352	rs830142	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	19q13.32	SLC8A2	rs830142-G	0.94	3E-7	(Slope index)	0.318	[0.2-0.44] unit increase	Affymetrix [8042262] (imputed)	N
951	chr19	47982461	47982462	rs35741895	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	19q13.32	KPTN	rs35741895-A	NR	2E-8		0.0107346	[0.007-0.0145] unit increase	Affymetrix [10061374] (imputed)	N
951	chr19	47985752	47985753	rs830151	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Candidatus Soleaferrea id.11350)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19q13.32		rs830151-G	NR	4E-8		5.479882	z score increase	Affymetrix, Illumina [NR] (imputed)	N
951	chr19	47990888	47990889	rs55800589	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	19q13.32	NAPA-AS1	rs55800589-G	0.6	3E-13		2.631579	[2.04-3.45]	Affymetrix [508192]	N
951	chr19	48054607	48054608	rs2914001	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	NAPA	rs2914001-C	0.8328125	2E-6	(NAPA, 4292_5_3)	0.15803942	[0.093-0.223] unit decrease	Illumina [> 1000000] (imputed)	N
951	chr19	48094143	48094144	rs9749297	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.33		rs9749297-A	0.15	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
952	chr19	48104646	48104647	rs2921552	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.33	NR	rs2921552-A	NR	2E-10		0.0183	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
952	chr19	48104646	48104647	rs2921552	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.33	NR	rs2921552-A	0.741025	4E-17		0.00800757	[0.0061-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
952	chr19	48104646	48104647	rs2921552	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.33	NR	rs2921552-A	0.741025	1E-12		0.00757006	[0.0055-0.0097] unit increase	Affymetrix [16582965] (imputed)	N
952	chr19	48110624	48110625	rs2099052	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.33	NR	rs2099052-T	0.694	1E-8		0.00686667	[0.0045-0.0092] unit increase	NR [9732723] (imputed)	N
952	chr19	48113603	48113604	rs62128735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.33	NR	rs62128735-A	0.6967490000000001	2E-15		0.0100586	[0.0074-0.0127] unit increase	Affymetrix [16585854] (imputed)	N
952	chr19	48113603	48113604	rs62128735	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.33	NR	rs62128735-A	0.6967490000000001	1E-9		0.0092377	[0.0062-0.0123] unit increase	Affymetrix [16585866] (imputed)	N
952	chr19	48116477	48116478	rs8110285	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.33	BICRA	rs8110285-A	0.239712	8E-12		0.00411332	[0.0029-0.0053] unit decrease	Affymetrix [13995440] (imputed)	N
952	chr19	48117027	48117028	rs2913995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs2913995-?	NR	5E-10				NR [~ 8900000] (imputed)	N
952	chr19	48117060	48117061	rs2974238	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	19q13.33	NR	rs2974238-?	NR	6E-7		0.029561	[0.018-0.041] unit increase	Affymetrix [9658292] (imputed)	N
952	chr19	48129520	48129521	rs11673468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.33		rs11673468-T	NR	2E-12		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
952	chr19	48129520	48129521	rs11673468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs11673468-T	NR	2E-10		0.0166	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
952	chr19	48138339	48138340	rs191404864	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		19q13.33	GLTSCR1	rs191404864-A	0.006	5E-6	(liability model)	0.53	[0.29-0.77] unit decrease	NR [19725427] (imputed)	N
952	chr19	48140856	48140857	rs2910996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	19q13.33		rs2910996-?	NR	1E-9				NR [~ 8900000] (imputed)	N
952	chr19	48140856	48140857	rs2910996	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.33	NR	rs2910996-G	0.229941	8E-15		0.0286879	[0.021-0.036] unit increase	NR [19129689] (imputed)	N
952	chr19	48161021	48161022	rs138472420	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors in depression	6,348 European ancestry responder cases, 3,340 European ancestry non-responder cases	NA	19q13.33	GLTSCR1	rs138472420-?		1E-6		5.628	[2.692-11.767]	Illumina [~ 12000000] (imputed)	N
952	chr19	48205724	48205725	rs3745760	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	19q13.33	GLTSCR1	rs3745760-?	NR	8E-7				Illumina [990115]	N
952	chr19	48206091	48206092	rs1005911	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	19q13.33	GLTSCR1	rs1005911-?	NR	1E-8		5.73	NR z score decrease	Illumina [8500000] (imputed)	N
953	chr19	48270093	48270094	rs12971544	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	19q13.33	NR	rs12971544-G	0.118	6E-6	(IFNalpha_CXCL10_of_CD8p_T)			Illumina [5084123] (imputed)	N
953	chr19	48298155	48298156	rs11671550	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	19q13.33	RPL23AP80	rs11671550-C	NR	5E-6				Illumina [up to 3951530] (imputed)	N
953	chr19	48327214	48327215	rs10405809	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.33	NR	rs10405809-?	NR	2E-32				Affymetrix [NR]	N
953	chr19	48335028	48335029	rs2879910	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.33	NR	rs2879910-C	0.481785	4E-10		0.00793705	[0.0054-0.0105] unit increase	Affymetrix [16578495] (imputed)	N
953	chr19	48335028	48335029	rs2879910	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.33	NR	rs2879910-C	0.48144	2E-8		0.0160429	[0.01-0.022] unit increase	Affymetrix [16580851] (imputed)	N
953	chr19	48339594	48339595	rs61748438	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	19q13.33	NR	rs61748438-?	NR	1E-6		0.815272	[0.49-1.14] unit decrease	NR [13958389] (imputed)	N
953	chr19	48342084	48342085	rs112686135	34748635	Miranda JP	2021-11-08	J Clin Endocrinol Metab	Genome-Wide Association Study And Polygenic Risk Scores Of Serum Dheas Levels In A Chilean Children Cohort.	DHEAS levels	390 Hispanic or Latin American female individuals	NA	19q13.33	CRX, SULT2A1	rs112686135-C	0.09	6E-6		0.13	unit decrease	Illumina [5510858] (imputed)	N
953	chr19	48348362	48348363	rs11668505	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	19q13.33	NR	rs11668505-?		2E-6	(AA)			Illumina [up to 524000]	N
953	chr19	48365522	48365523	rs296396	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs296396-T	0.17	1E-92	(4-androsten-3beta,17beta-diol disulfate 1)	0.175	[0.16-0.19] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
953	chr19	48365522	48365523	rs296396	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs296396-T	0.16	1E-12	(dehydroisoandrosterone sulfate (DHEA-S))	0.046	[0.032-0.06] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48366504	48366505	rs296393	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs296393-T	0.1446	4E-12	(SULT2A1)	1.203	NR unit decrease	Illumina [1671387] (imputed)	N
954	chr19	48368533	48368534	rs296391	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	19q13.33	SULT2A1	rs296391-?	NR	2E-43	(X-11440)	0.1494	[NR] unit decrease	Affymetrix [655658]	N
954	chr19	48368533	48368534	rs296391	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	19q13.33	SULT2A1	rs296391-?	NR	2E-26	(X-11244)	0.1464	[NR] unit decrease	Affymetrix [655658]	N
954	chr19	48368776	48368777	rs296390	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs296390-C	0.1951	1E-11	(SULT2A1)	1.085	NR unit decrease	Illumina [1671387] (imputed)	N
954	chr19	48369565	48369565	rs11403123	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19q13.33	NR	rs11403123-CT	0.760247	3E-9		0.0152188	[0.01-0.02] unit increase	Affymetrix [16583148] (imputed)	N
954	chr19	48371101	48371102	rs296381	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs296381-T	0.83	5E-143	(X-11440)	0.164	[0.15-0.18] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48371101	48371102	rs296381	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs296381-T	0.83	1E-10	(X-13429)	0.053	[0.037-0.069] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48371852	48371853	rs296369	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	SULT2A1	rs296369-C	0.843125	2E-27	(SULT2A1, 9829_91_3)	0.36032397	[0.3-0.42] unit increase	Illumina [> 1000000] (imputed)	N
954	chr19	48372194	48372195	rs182420	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs182420-T	0.76	6E-12	(androsterone sulfate)	0.051	[0.037-0.065] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48374319	48374320	rs112285002	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	SULT2A1	rs112285002-C	0.923061	6E-20	(androstenediol (3alpha, 17alpha) monosulfate (3))	0.393	[0.31-0.48] unit increase	Illumina [13039987] (imputed)	N
954	chr19	48374319	48374320	rs112285002	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	SULT2A1	rs112285002-C	0.923061	3E-25	(androstenediol (3beta,17beta) disulfate (1))	0.437	[0.35-0.52] unit increase	Illumina [13039987] (imputed)	N
954	chr19	48374319	48374320	rs112285002	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	SULT2A1	rs112285002-C	0.923061	2E-34	(pregnen-diol disulfate C21H34O8S2*)	0.526	[0.44-0.61] unit increase	Illumina [13039987] (imputed)	N
954	chr19	48374319	48374320	rs112285002	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.33	NR	rs112285002-T	0.159529	2E-110		0.060321	[0.055-0.066] unit increase	Affymetrix [16668957] (imputed)	N
954	chr19	48374949	48374950	rs62129966	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULT2A1	5,368 Icelandic ancestry individuals	NA	19q13.33		rs62129966-A	0.1581	7E-40		0.337793	[0.29-0.39] unit decrease	Illumina [7506463] (imputed)	N
954	chr19	48374949	48374950	rs62129966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.33		rs62129966-A	NR	5E-32		0.1553	[0.13-0.18] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
954	chr19	48374949	48374950	rs62129966	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	19q13.33	SULT2A1	rs62129966-A	0.164	2E-10		1.113	[1.077-1.150]	Affymetrix [7871717] (imputed)	N
954	chr19	48374949	48374950	rs62129966	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.33		rs62129966-?	NR	2E-108		0.0611636	[0.056-0.067] unit increase	NR [6912294] (imputed)	N
954	chr19	48374949	48374950	rs62129966	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	19q13.33		rs62129966-A	0.16	3E-73		0.0805	[0.072-0.089] unit decrease	NR [8806780] (imputed)	N
954	chr19	48374949	48374950	rs62129966	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	19q13.33		rs62129966-A	0.16	2E-34		0.0562	[0.047-0.065] unit decrease	NR [8806780] (imputed)	N
954	chr19	48374949	48374950	rs62129966	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	19q13.33		rs62129966-A	0.16	1E-34		0.0415	[0.035-0.048] unit increase	NR [6098063] (imputed)	N
954	chr19	48374949	48374950	rs62129966	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.33	SULT2A1	rs62129966-A	0.16	2E-11	(11-ketoetiocholanolone sulfate)	0.522	[0.37-0.67] unit decrease	Illumina [7750367] (imputed)	N
954	chr19	48376940	48376941	rs296363	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	19q13.33	SULT2A1	rs296363-?	NR	3E-10		0.009715	[0.0046-0.0148] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
954	chr19	48376994	48376995	rs212100	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.33		rs212100-T	0.164001	1E-135		0.066	[0.06-0.072] unit increase	NR [7250403] (imputed)	N
954	chr19	48376994	48376995	rs212100	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.33	SULT2A1	rs212100-T	0.164587	2E-8		0.0149029	[0.0097-0.0201] unit decrease	Affymetrix [NR] (imputed)	N
954	chr19	48376994	48376995	rs212100	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	19q13.33	SULT2A1	rs212100-?		2E-31		1.1627907	[1.14-1.2]	Affymetrix, Illumina [43000000] (imputed)	N
954	chr19	48380205	48380206	rs2431830	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs2431830-T	0.73	2E-8		0.0633974	[0.041-0.085] unit increase	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48380205	48380206	rs2431830	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs2431830-T	0.73	1E-7	(women)	0.0948782	[0.06-0.13] unit increase	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48382156	48382157	rs2547239	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.33	SULT2A1	rs2547239-T	0.16545	3E-20		0.00283549	[0.0022-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
954	chr19	48383206	48383207	rs398101248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.33		rs398101248-T	NR	6E-12		0.1484	[0.11-0.19] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
954	chr19	48383399	48383400	rs189675673	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	19q13.33	NR	rs189675673-G	NR	2E-7		5.167	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
954	chr19	48383541	48383542	rs62129968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.33	NR	rs62129968-C	0.834793	7E-11		0.016503	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
954	chr19	48384647	48384648	rs10425629	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	19q13.33	NR	rs10425629-C	0.165201	3E-11		0.00759891	[0.0054-0.0098] unit increase	Affymetrix [16582268] (imputed)	N
954	chr19	48384748	48384749	rs10426201	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	19q13.33		rs10426201-G	0.169	8E-20		0.106	[0.082-0.13] unit decrease	Affymetrix [812428]	N
954	chr19	48385056	48385057	rs2547231	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	19q13.33	SULT2A1	rs2547231-A	0.84	1E-7	(EA)	1.17	[1.13-1.22]	Affymetrix, Illumina [at least 2305318] (imputed)	N
954	chr19	48385056	48385057	rs2547231	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	19q13.33	SULT2A1	rs2547231-A	0.83	3E-191	(X-11440/4-androsten-3beta,17beta-diol disulfate 2)	0.141	[0.13-0.15] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48385056	48385057	rs2547231	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs2547231-A	0.83	4E-16	(X-12850)	0.059	[0.045-0.073] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48385056	48385057	rs2547231	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs2547231-A	0.83	3E-22	(5alpha-androstan-3beta,17beta-diol disulfate)	0.081	[0.065-0.097] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48385056	48385057	rs2547231	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	SULT2A1	rs2547231-A	0.83	3E-11	(X-12456)	0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
954	chr19	48386472	48386473	rs62529857	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	19q13.33	SULT2A1	rs62529857-T	NR	8E-8		5.376	NR z-score increase	Illumina [~ 17000000] (imputed)	N
954	chr19	48388657	48388658	rs296360	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.33	SULT2A1	rs296360-T	0.834709	5E-11		0.017613	[0.012-0.023] unit increase	Affymetrix [NR] (imputed)	N
954	chr19	48388657	48388658	rs296360	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs296360-C	0.173	4E-12		0.0922151	[0.066-0.118] unit decrease	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48388657	48388658	rs296360	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs296360-C	0.173	1E-11	(women)	0.142747	[0.1-0.18] unit decrease	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48391291	48391292	rs2972623	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	SULT2A1, SNAR-A12	rs2972623-G	0.924572	6E-35	(androstenediol (3alpha, 17alpha) monosulfate (2))	0.525	[0.44-0.61] unit decrease	Illumina [13039987] (imputed)	N
954	chr19	48393350	48393351	rs62129970	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.33	SULT2A1	rs62129970-T	0.16	5E-26	(pregnenediol disulfate (C21H34O8S2))	0.691	[0.56-0.82] unit decrease	Illumina [7750367] (imputed)	N
954	chr19	48394041	48394042	rs2910400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19q13.33	NR	rs2910400-T	NR	2E-18		0.0234	[0.018-0.029] unit increase	Affymetrix [9000000] (imputed)	N
954	chr19	48394041	48394042	rs2910400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs2910400-T	NR	2E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
954	chr19	48399315	48399316	rs117471111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19q13.33	NR	rs117471111-C	NR	8E-42		0.061	[0.052-0.07] unit increase	Affymetrix [9000000] (imputed)	N
954	chr19	48399315	48399316	rs117471111	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs117471111-C	NR	4E-9		0.026	[0.017-0.035] unit increase	Affymetrix [9000000] (imputed)	N
954	chr19	48401892	48401893	rs2637125	26014426	Ruth KS	2015-05-27	Eur J Hum Genet	Genome-wide association study with 1000 genomes imputation identifies signals for nine sex hormone-related phenotypes.	Sex hormone levels	up to 2913 European ancestry individuals	NA	19q13.33	SULT2A1	rs2637125-?	NR	2E-6	(DHEAS)	0.089	[NR] unit increase	Illumina [7879351] (imputed)	N
954	chr19	48401892	48401893	rs2637125	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	19q13.33	SULT2A1	rs2637125-A	0.15	3E-19		0.09	[0.07-0.11] umol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
954	chr19	48403214	48403215	rs2932761	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Peripheral vascular disease	4,301 European ancestry cases, 52,336 European ancestry controls	NA	19q13.33		rs2932761-G	0.2893864	4E-8		1.27		Affymetrix [12080827] (imputed)	N
954	chr19	48412453	48412454	rs200943612	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs200943612-C	0.776	1E-9	(women)	0.127251	[0.086-0.168] unit increase	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48412453	48412454	rs200943612	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	19q13.33	NR	rs200943612-C	0.776	1E-8		0.0755373	[0.05-0.102] unit increase	Affymetrix [up to 8900000] (imputed)	N
954	chr19	48461239	48461240	rs62130059	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.33	NR	rs62130059-C	0.335823	9E-34		0.02731	[0.023-0.032] unit decrease	Affymetrix [16668957] (imputed)	N
954	chr19	48465311	48465312	rs2972516	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.33	CABP5	rs2972516-T	0.17	6E-15	(X - 21470)	0.708	[0.53-0.89] unit decrease	Illumina [7750367] (imputed)	N
954	chr19	48465311	48465312	rs2972516	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.33	CABP5	rs2972516-T	0.17	4E-31	(X - 11440)	0.623	[0.52-0.73] unit decrease	Illumina [7750367] (imputed)	N
954	chr19	48465311	48465312	rs2972516	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	19q13.33	CABP5	rs2972516-T	0.17	4E-20	(androstenediol (3beta,17beta))	0.8	[0.63-0.97] unit decrease	Illumina [7750367] (imputed)	N
955	chr19	48522689	48522690	rs137939366	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	19q13.33	ELSPBP1	rs137939366-?	NR	3E-7				Illumina [430492]	N
955	chr19	48527581	48527582	rs3936340	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	19q13.33	ELSPBP1	rs3936340-?	NR	2E-6	(High intelligence)	6.8	[4.06-9.54] unit increase	Illumina [795637]	N
955	chr19	48531805	48531806	rs75601727	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	19q13.33	CCDC9, GLTSCR1, ELSPBP1, CABP5	rs75601727-?		1E-27				Affymetrix, Illumina [NR] (imputed)	N
955	chr19	48533699	48533700	rs77128495	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	19q13.33	NR	rs77128495-T		7E-11		0.12	[0.081-0.159] unit increase	NR [NR]	N
955	chr19	48542308	48542309	rs750456	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Obesity (extreme)	984 cases, 2,012 controls	NA	19q13.33	CABP5	rs750456-T	0.739	6E-6		1.350439	[1.22-1.48]	Illumina [500508]	N
955	chr19	48543861	48543862	rs8105198	31888951	Schlauch KA	2019-12-30	G3 (Bethesda)	A Comprehensive Genome-Wide and Phenome-Wide Examination of BMI and Obesity in a Northern Nevadan Cohort.	Body mass index	5,994 non-diabetic individuals, 651 diabetic individuals	NA	19q13.33	CABP5	rs8105198-G	0.1718	5E-6		0.6466	[0.37-0.92] unit decrease	Illumina [500508]	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	8E-9	(LDHB)	0.1421	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	7E-9	(DPYSL2)	0.2663	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	7E-9	(CNN3)	0.01625	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	6E-9	(LPP)	0.007126	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	3E-13	(CAPNS1)	0.03203	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	2E-8	(TAGLN)	0.3692	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	2E-11	(CAPN2)	0.05782	NR unit increase	Illumina [1671387] (imputed)	N
955	chr19	48619153	48619154	rs35100567	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs35100567-T	0.01045	1E-10	(CALD1)	0.1063	NR unit increase	Illumina [1671387] (imputed)	N
956	chr19	48687778	48687779	rs4801751	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs4801751-?	NR	7E-17				NR [~ 8900000] (imputed)	N
956	chr19	48722577	48722578	rs10412481	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.33	LOC374920	rs10412481-?	NR	9E-7	(CE 14:0)	1.1392641	[0.69-1.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
957	chr19	48783111	48783112	rs142959513	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs142959513-T	0.01394	1E-8	(SH3BGRL3)	0.01832	NR unit increase	Illumina [1671387] (imputed)	N
957	chr19	48869177	48869178	rs919804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs919804-T	NR	9E-10		0.0338	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
958	chr19	48904688	48904689	rs62132014	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.33	Intergenic	rs62132014-C	0.8201	3E-9	(MTAG)	0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
958	chr19	48904688	48904689	rs62132014	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q13.33	Intergenic	rs62132014-C	0.8201	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
958	chr19	48931221	48931222	rs10419023	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	19q13.33	NR	rs10419023-T	0.04694	6E-7		3.013	[1.91-4.75]	Illumina [274400]	N
958	chr19	48981932	48981933	rs7257081	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	19q13.33	CYTH2	rs7257081-T	NR	3E-6		0.23751585	[0.14-0.34] unit decrease	Illumina [> 6200000] (imputed)	N
958	chr19	49003956	49003957	rs147753292	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs147753292-C	0.01742	7E-9	(CAPNS1)	0.02128	NR unit increase	Illumina [1671387] (imputed)	N
958	chr19	49003956	49003957	rs147753292	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs147753292-C	0.01742	4E-12	(CALD1)	0.09318	NR unit increase	Illumina [1671387] (imputed)	N
958	chr19	49003956	49003957	rs147753292	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.33	NR	rs147753292-C	0.01742	2E-9	(CAPN2)	0.04285	NR unit increase	Illumina [1671387] (imputed)	N
958	chr19	49008613	49008614	rs757625335	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.33	LMTK3	rs757625335-A	0.003	7E-8		0.52	[0.33-0.71] unit increase	Illumina [NR] (imputed)	N
959	chr19	49051612	49051613	rs114518757	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	FUT2	rs114518757-T	0.9903125	8E-8	(FUT2, 9121_28_3)	0.6415209	[0.41-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
959	chr19	49063836	49063836	rs35221052	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 215)	19,670 European ancestry individuals	NA	19q13.33		rs35221052-?	NR	9E-9				NR [9705931] (imputed)	N
959	chr19	49075081	49075082	rs2665577	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs2665577-C	NR	4E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
959	chr19	49092233	49092234	rs10426377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs10426377-A	NR	5E-12		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
959	chr19	49092550	49092551	rs10401347	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	19q13.33	SULT2B1	rs10401347-G	0.65	5E-7		64.333275	[39.19-89.47] kcal/day decrease	Affymetrix [491265]	N
959	chr19	49094855	49094856	rs3745726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs3745726-T	NR	6E-13		0.0461	[0.034-0.059] unit increase	Affymetrix [9000000] (imputed)	N
959	chr19	49095277	49095278	rs3786749	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	SULT2B1	rs3786749-?		1E-10				Illumina [709211] (imputed)	N
959	chr19	49095774	49095775	rs3815692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs3815692-A	NR	1E-17		0.0427	[0.033-0.052] unit increase	Affymetrix [9000000] (imputed)	N
959	chr19	49097886	49097887	rs10417472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs10417472-T	NR	9E-35		0.044	[0.037-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
959	chr19	49105125	49105126	rs62130312	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.33	FAM83E	rs62130312-C	0.867698	5E-20		0.00314999	[0.0025-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
959	chr19	49107616	49107617	rs71357834	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	19q13.33	NR	rs71357834-?	NR	2E-22		0.05724	[0.046-0.069] unit increase novel	Illumina [6108953] (imputed)	N
959	chr19	49112294	49112295	rs2617805	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	CA11	rs2617805-T	0.8459375	1E-7	(CA11, 8859_51_3)	0.17495373	[0.11-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
959	chr19	49114478	49114479	rs2617802	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	19q13.33		rs2617802-?	NR	5E-8				Affymetrix [NR] (imputed)	N
959	chr19	49114478	49114479	rs2617802	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	19q13.33		rs2617802-T	0.798	1E-19				Affymetrix [10369434] (imputed)	N
959	chr19	49114478	49114479	rs2617802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.33	FAM83E	rs2617802-G	0.203171	2E-32		0.032691594	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49114478	49114479	rs2617802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.33	FAM83E	rs2617802-G	0.203163	9E-36		0.03437423	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49116358	49116359	rs447802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs447802-C	0.369561	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
959	chr19	49117103	49117104	rs433852	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	19q13.33	Intergenic	rs433852-?	NR	8E-6		1.6849171	[NR]	Illumina [~ 5900000] (imputed)	N
959	chr19	49117103	49117104	rs433852	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	FAM83E	rs433852-?		5E-8				Illumina [709211] (imputed)	N
959	chr19	49118370	49118371	rs2292342	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	RPL18	rs2292342-?		7E-12				Illumina [709211] (imputed)	N
959	chr19	49126586	49126587	rs510066	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CA11	5,360 Icelandic ancestry individuals	NA	19q13.33		rs510066-G	0.1573	6E-13		0.180563	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
959	chr19	49127489	49127490	rs386243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.33	SPHK2	rs386243-T	0.24043	5E-9		0.015145589	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49127489	49127490	rs386243	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.33	SPHK2	rs386243-T	0.240489	4E-25		0.026833251	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49127489	49127490	rs386243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.33	NR	rs386243-T	0.252694	5E-12		0.01516	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
959	chr19	49127489	49127490	rs386243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs386243-T	0.323156	9E-32				Affymetrix, Illumina [23114412] (imputed)	N
959	chr19	49127489	49127490	rs386243	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.33	NR	rs386243-T	0.250107	1E-30		0.026404	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
959	chr19	49127489	49127490	rs386243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.33		rs386243-?	NR	1E-12				NR [~ 8900000] (imputed)	N
959	chr19	49129345	49129346	rs11544355	31376382	Yang C	2019-07-31	J Invest Dermatol	Exome-Wide Rare Loss-of-Function Variant Enrichment Study of 21,347 Han Chinese Individuals Identifies Four Susceptibility Genes for Psoriasis.	Psoriasis	10,668 Chinese ancestry cases, 10,679 Chinese ancestry controls	NA	19q13.33	SPHK2	rs11544355-?		7E-11		0.1741		NR [66000]	N
959	chr19	49130070	49130071	rs71335811	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	19q13.33	SPHK2	rs71335811-T	0.2469	3E-12		0.02939888	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49132866	49132867	rs61751862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.33		rs61751862-C	NR	1E-15		0.0965	[0.073-0.12] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.01146	4E-10		0.07100513	[0.049-0.093] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.0114610000000001	3E-10		0.07113871	[0.049-0.093] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.011437	3E-9		0.0667563	[0.045-0.089] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.011445	5E-20		0.10286722	[0.081-0.125] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.0114570000000001	3E-19		0.102234565	[0.08-0.125] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.01145	1E-24		0.11515581	[0.093-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.011456	2E-18		0.097849764	[0.076-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.0114649999999999	6E-16		0.0915634	[0.069-0.114] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.011455	2E-16		0.09288416	[0.071-0.115] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.33	SPHK2	rs61751862-C	0.011455	1E-16		0.0932027	[0.071-0.115] unit increase	Affymetrix [93095623] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs61751862-C	0.011539	1E-21				Affymetrix, Illumina [23472807] (imputed)	N
959	chr19	49132866	49132867	rs61751862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.33	NR	rs61751862-C	0.011807	2E-24		0.101517	[0.082-0.121] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
959	chr19	49132866	49132867	rs61751862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.33		rs61751862-?	NR	1E-13				NR [~ 8900000] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	2E-11		0.0320013	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	2E-9		0.0289721	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	2E-11		0.0319555	[0.023-0.041] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	2E-8		0.0267549	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	8E-9		0.0275339	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs550455-T	0.759119	4E-8		0.0260701	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
959	chr19	49136514	49136515	rs550455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.33		rs550455-C	NR	1E-9		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
959	chr19	49136650	49136651	rs12608544	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	DBP	rs12608544-?		2E-12				Illumina [709211] (imputed)	N
959	chr19	49140808	49140809	rs8102492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.33	SEC1P, DBP	rs8102492-C	0.795906	4E-12		0.019051487	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr19	49141406	49141410	rs137896889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.33		rs137896889-A	NR	9E-22		0.024	[0.019-0.029] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
959	chr19	49144240	49144241	rs55720021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs55720021-T	0.761	1E-15		0.0337717	[0.025-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144240	49144241	rs55720021	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs55720021-T	0.7611	3E-16		0.03444479	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144245	49144245	rs11428934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs11428934-TG	0.7585	4E-13		0.03067655	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144245	49144245	rs11428934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs11428934-TG	0.7585	5E-13		0.03056021	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144245	49144245	rs11428934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs11428934-TG	0.7585	6E-13		0.03038777	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144245	49144245	rs11428934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	19q13.33	SEC1P, CA11	rs11428934-TG	0.7585	3E-13		0.03087417	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr19	49144789	49144790	rs11880333	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	CA11	rs11880333-?		5E-12				Illumina [709211] (imputed)	N
959	chr19	49147493	49147494	rs7255644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs7255644-C	NR	2E-16		0.0521	[0.04-0.065] unit increase	Affymetrix [9000000] (imputed)	N
959	chr19	49148780	49148781	rs10426317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.33	SEC1P, CA11	rs10426317-T	0.759892	3E-9		0.01546946	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
960	chr19	49152954	49152955	rs8111500	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	intergenic	rs8111500-?	NR	4E-9				Illumina [709211] (imputed)	N
960	chr19	49158137	49158138	rs8103121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs8103121-G	NR	4E-12		0.0175	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49158137	49158138	rs8103121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	19q13.33	NR	rs8103121-G	NR	7E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49158137	49158138	rs8103121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs8103121-G	NR	5E-120		0.0586	[0.054-0.064] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49158137	49158138	rs8103121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs8103121-G	NR	5E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49158137	49158138	rs8103121	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs8103121-G	NR	4E-12		0.0174	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49164951	49164952	rs281392	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.33	NTN5	rs281392-A	0.33	5E-206		30.6	z-score increase	Affymetrix [4311822] (imputed)	N
960	chr19	49164951	49164952	rs281392	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	19q13.33	NR	rs281392-?	NR	3E-32		0.0528	[0.044-0.062] unit increase novel	Illumina [6108953] (imputed)	N
960	chr19	49168941	49168942	rs8111874	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19q13.33		rs8111874-G	0.535711	6E-9		0.0239534	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49168941	49168942	rs8111874	27559109	Bustamante M	2016-08-23	Hum Mol Genet	A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways.	diarrhoeal disease at age 1	2,693 European ancestry cases, 3,065 European ancestry controls	2,302 European ancestry cases, 1,466 European ancestry controls	19q13.33	NTN5, SEC1P	rs8111874-G	0.57	8E-14		1.29	[1.21-1.38]	Illumina [at least 5400000] (imputed)	N
960	chr19	49171305	49171306	rs12462111	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.33		rs12462111-C	0.535131	7E-10		0.0240688	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49171305	49171306	rs12462111	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	JC polyomavirus VP1 antibody levels	8,567 European ancestry individuals	NA	19q13.33		rs12462111-?	NR	5E-10				Affymetrix [NR] (imputed)	N
960	chr19	49171305	49171306	rs12462111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19q13.33		rs12462111-?	NR	5E-10				NR [~ 8900000] (imputed)	N
960	chr19	49171305	49171306	rs12462111	27559109	Bustamante M	2016-08-23	Hum Mol Genet	A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways.	diarrhoeal disease at age 2 with doctor diagnosis	990 European ancestry cases, 5,243 European ancestry controls	1,274 European ancestry cases, 6,448 European ancestry controls	19q13.33	NTN5	rs12462111-C	0.57	2E-7		1.23	[1.14-1.33]	Affymetrix, Illumina [at least 5400000] (imputed)	N
960	chr19	49178751	49178752	rs62130341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs62130341-T	NR	1E-11		0.0251	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49178751	49178752	rs62130341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs62130341-T	NR	2E-24		0.038	[0.031-0.045] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49178751	49178752	rs62130341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs62130341-T	NR	1E-11		0.0253	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49178751	49178752	rs62130341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs62130341-T	NR	9E-11		0.0241	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49178751	49178752	rs62130341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs62130341-T	NR	1E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49193093	49193094	rs34404429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs34404429-G	NR	1E-83		0.0699	[0.063-0.077] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49196274	49196275	rs11665674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	19q13.33		rs11665674-G	0.477698	3E-167		0.120009	[0.11-0.13] unit decrease	Illumina [13474352] (imputed)	N
960	chr19	49196274	49196275	rs11665674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	19q13.33		rs11665674-G	0.476662705	2E-8		0.13518523	[0.088-0.182] unit increase	Illumina [13426486] (imputed)	N
960	chr19	49201216	49201217	rs368565	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL15	5,366 Icelandic ancestry individuals	NA	19q13.33		rs368565-T	0.3511	4E-12		0.133933	[0.096-0.172] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49203828	49203829	rs35106244	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs35106244-C	0.5378	8E-9		0.023926	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49203828	49203829	rs35106244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19q13.33		rs35106244-T	NR	9E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
960	chr19	49203828	49203829	rs35106244	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs35106244-T	0.485	6E-15	(C-C motif chemokine 25, CCL25.14068.29.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49203828	49203829	rs35106244	27559109	Bustamante M	2016-08-23	Hum Mol Genet	A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways.	diarrhoeal disease at age 1 with doctor diagnosis	1,339 European ancestry cases, 5,064 European ancestry controls	1,411 European ancestry cases, 6,054 European ancestry controls	19q13.33	FUT2	rs35106244-T	0.44	7E-11		1.27	[1.18-1.35]	Affymetrix, Illumina [at least 5400000] (imputed)	N
960	chr19	49204020	49204021	rs57940795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs57940795-C	NR	8E-11		0.0223	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49204020	49204021	rs57940795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs57940795-C	NR	1E-10		0.0232	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49204020	49204021	rs57940795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs57940795-C	NR	1E-114		0.0779	[0.071-0.085] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49204020	49204021	rs57940795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs57940795-C	NR	6E-15		0.028	[0.021-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49204020	49204021	rs57940795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs57940795-C	NR	2E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49204393	49204394	rs73942308	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.33	LOC105447645	rs73942308-A	0.858649	4E-165		0.00889142	[0.0082-0.0095] unit decrease	Affymetrix [13995440] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN1	5,354 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	9E-36		0.234319	[0.2-0.27] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SECTM1	5,362 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	2E-29		0.213321	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PIP	5,361 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	2E-13		0.1412	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GKN2	5,367 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	4E-19		0.174198	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM177A1	5,362 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	1E-38		0.249294	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL15	5,365 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	1E-13		0.136179	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C6orf58	5,366 Icelandic ancestry individuals	NA	19q13.33		rs679574-C	0.3988	4E-22		0.186488	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206107	49206108	rs679574	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (2'-fucosyllactose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs679574-?	NR	5E-70				Illumina [1128286]	N
960	chr19	49206107	49206108	rs679574	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.33	FUT2	rs679574-C	0.5201	2E-21		0.0247	[0.02-0.03] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
960	chr19	49206107	49206108	rs679574	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs679574-G	0.507	4E-18	(Protein FAM177A1, FAM177A1.8039.41.3)	0.21	[0.17-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206107	49206108	rs679574	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs679574-G	0.507	2E-16	(Galactoside 3(4)-L-fucosyltransferase, FUT3.4548.4.2)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206107	49206108	rs679574	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs679574-G	0.507	1E-15	(Intestinal-type alkaline phosphatase, ALPI.10463.23.3)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206107	49206108	rs679574	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	19q13.33	FUT2	rs679574-?	NR	1E-17	(subset analysis)			Illumina [130052]	N
960	chr19	49206144	49206145	rs516316	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.33	FUT2	rs516316-G	0.492064	1E-46		0.0297001	[0.026-0.034] unit decrease	Affymetrix [NR] (imputed)	N
960	chr19	49206144	49206145	rs516316	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.33	FUT2	rs516316-G	0.492019	4E-49		0.0301882	[0.026-0.034] unit decrease	Affymetrix [NR] (imputed)	N
960	chr19	49206144	49206145	rs516316	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.33	FUT2	rs516316-?	NR	1E-61		0.0412	[0.037-0.046] unit decrease	Affymetrix [5701386] (imputed)	N
960	chr19	49206144	49206145	rs516316	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	NR	rs516316-C	0.507	6E-20	(Secreted and transmembrane protein 1, SECTM1.13093.6.3)	0.22	[0.18-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206144	49206145	rs516316	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	19q13.33	FUT2	rs516316-C	0.48	1E-71		1.25	[1.24-1.27]	Illumina [at least 560000] (imputed)	N
960	chr19	49206171	49206172	rs516246	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	19q13.33		rs516246-T	NR	1E-8		0.0344	[0.022-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
960	chr19	49206171	49206172	rs516246	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose II)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs516246-?	NR	4E-23				Illumina [1128286]	N
960	chr19	49206171	49206172	rs516246	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (fucodisialyllacto-N-hexaose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs516246-?	NR	7E-14				Illumina [1128286]	N
960	chr19	49206171	49206172	rs516246	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.33	FUT2	rs516246-C	0.50563	9E-12		0.017505	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
960	chr19	49206171	49206172	rs516246	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	19q13.33	FUT2	rs516246-C	0.490532	1E-8		0.034396496	[0.023-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
960	chr19	49206171	49206172	rs516246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19q13.33		rs516246-?	NR	4E-19				NR [~ 8900000] (imputed)	N
960	chr19	49206171	49206172	rs516246	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs516246-T	0.507	6E-20	(Secreted and transmembrane protein 1, SECTM1.13093.6.3)	0.22	[0.18-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	NR	2E-8		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	0.518	2E-8	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	NR	1E-20		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	0.518	2E-18	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	NR	1E-16		0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs516246-C	0.518	2E-15	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206171	49206172	rs516246	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	19q13.33	IZUMO1, NTN5, FUT2, MAMSTR, RASIP1	rs516246-?		5E-6				Illumina [9725440] (imputed)	N
960	chr19	49206171	49206172	rs516246	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	19q13.33	IZUMO1, NTN5, FUT2, MAMSTR, RASIP1	rs516246-?		4E-11				Illumina [9560910] (imputed)	N
960	chr19	49206171	49206172	rs516246	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	19q13.33	NR	rs516246-?		4E-27	(CDH1)	0.3497	[NR] unit decrease	Illumina [NR]	N
960	chr19	49206171	49206172	rs516246	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.33	NR	rs516246-A	0.4652	1E-13	(EA)	1.0784879	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
960	chr19	49206171	49206172	rs516246	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.33	NR	rs516246-A	0.4652	1E-20	(EA)	1.1213977	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
960	chr19	49206171	49206172	rs516246	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	19q13.33	FUT2	rs516246-T	0.51	5E-14		1.1494253		Illumina [135870]	N
960	chr19	49206171	49206172	rs516246	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.33	FUT2	rs516246-A	0.272	2E-6	(Vitamin B12 )	0.03	[NR] pmol/L increase	Illumina [899892]	N
960	chr19	49206171	49206172	rs516246	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	19q13.33	FUT2, SPHK2, IZUMO1, DBP	rs516246-T	0.483	1E-15		1.107	[1.071-1.143]	Affymetrix, Illumina [1230000] (imputed)	N
960	chr19	49206171	49206172	rs516246	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	19q13.33	FUT2	rs516246-T	0.47	8E-10		2.3	[1.80-2.90] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
960	chr19	49206416	49206417	rs492602	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	E Cad plasma levels	400 French ancestry individuals	NA	19q13.33		rs492602-A	NR	4E-12		0.173	[0.13-0.22] ng/mL decrease	Illumina [5201092] (imputed)	N
960	chr19	49206416	49206417	rs492602	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	19q13.33		rs492602-?	NR	3E-8		0.00503677	[0.0032-0.0068] unit decrease	NR [NR]	N
960	chr19	49206416	49206417	rs492602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.33		rs492602-G	NR	1E-566		0.1186	[0.11-0.12] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
960	chr19	49206416	49206417	rs492602	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose I)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs492602-?	NR	4E-41				Illumina [1128286]	N
960	chr19	49206416	49206417	rs492602	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	BK polyomavirus VP1 antibody levels	8,555 White British ancestry individuals	NA	19q13.33	FUT2	rs492602-A	0.479	4E-9		0.09	[0.061-0.119] unit decrease	NR [25472218] (imputed)	N
960	chr19	49206416	49206417	rs492602	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tissue factor levels	21,758 European ancestry individuals	9,173 individuals	19q13.33		rs492602-A	0.56	1E-142		0.2107	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
960	chr19	49206416	49206417	rs492602	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	19q13.33		rs492602-?	NR	7E-12		0.06	[0.042-0.078] unit decrease	Affymetrix [9906178] (imputed)	N
960	chr19	49206416	49206417	rs492602	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	FUT2	rs492602-A	0.63245	9E-14	(ADpSGEGDFXAEGGGVR*)	0.176	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
960	chr19	49206416	49206417	rs492602	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	19q13.33	FUT2	rs492602-A	0.5076	8E-10		6.143	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
960	chr19	49206416	49206417	rs492602	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	19q13.33		rs492602-A	0.5264	2E-7		0.8876	[0.55-1.22] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
960	chr19	49206416	49206417	rs492602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.33		rs492602-?	NR	2E-11				NR [~ 8900000] (imputed)	N
960	chr19	49206416	49206417	rs492602	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1	rs492602-A	NR	3E-8		5.57	[NR] z score decrease	NR [16213998]	N
960	chr19	49206416	49206417	rs492602	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs492602-G	0.507	2E-21	(Transcobalamin-1, TCN1.11232.46.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	NR	2E-8		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	0.518	2E-8	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	NR	1E-20		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	0.518	2E-18	(EA)	0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	NR	1E-16		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs492602-A	0.518	2E-15	(EA)	0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49206416	49206417	rs492602	28537254	Tsoi LC	2017-05-24	Nat Commun	Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.	Psoriasis	Up to 11,988 European ancestry cases, up to 275,335 European ancestry controls	7,044 European ancestry cases, 11,434 European ancestry controls	19q13.33	FUT2	rs492602-G	0.46	7E-13		1.11		Illumina, Perlegen [9113515] (imputed)	N
960	chr19	49206416	49206417	rs492602	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19q13.33	FUT2, RASIP1	rs492602-G	0.45	2E-12		0.14	unit increase	Illumina [5270624] (imputed)	N
960	chr19	49206416	49206417	rs492602	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	19q13.33	FUT2	rs492602-C	0.482	2E-7	(Vitamin B12)	0.143	[NR] unit increase	Illumina [737081]	N
960	chr19	49206416	49206417	rs492602	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.33	FLJ36070	rs492602-G	0.47	1E-16		0.031	[NR] unit increase	NR [NR] (imputed)	N
960	chr19	49206416	49206417	rs492602	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	19q13.33	FUT2, FLJ36070	rs492602-G	0.49	2E-10		1.27	[0.86-1.68] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
960	chr19	49206416	49206417	rs492602	18776911	Hazra A	2008-09-07	Nat Genet	Common variants of FUT2 are associated with plasma vitamin B12 levels.	Vitamin B12 levels	1,658 European ancestry female individuals	1,059 European ancestry female individuals	19q13.33	FUT2	rs492602-A	0.51	5E-17		0.09	[0.070-0.110] unit decrease	Illumina [528134]	N
960	chr19	49206461	49206462	rs681343	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	BK polyomavirus VP1 antibody levels	14,249 European ancestry individuals	NA	19q13.33		rs681343-?	NR	6E-16				Affymetrix [NR] (imputed)	N
960	chr19	49206461	49206462	rs681343	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	19q13.33		rs681343-T	0.482	5E-8		1.07		Affymetrix [15679186] (imputed)	N
960	chr19	49206461	49206462	rs681343	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	19q13.33	FUT2, MAMSTR	rs681343-T	0.484	2E-8		0.005	[0.003-0.006] unit increase	NR [57525634] (imputed)	N
960	chr19	49206461	49206462	rs681343	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Peptic ulcer disease	16,666 European ancestry cases, 439,661 European ancestry controls	NA	19q13.33	NR	rs681343-C	0.49	2E-15		0.92	NR	NR [8546065] (imputed)	N
960	chr19	49206461	49206462	rs681343	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs681343-T	0.507	3E-22	(C-C motif chemokine 15, CCL15.3509.1.1)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206461	49206462	rs681343	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs681343-T	0.507	2E-27	(C-C motif chemokine 15, CCL15.14109.15.3)	0.26	[0.22-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206461	49206462	rs681343	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs681343-T	0.507	2E-21	(Transcobalamin-1, TCN1.11232.46.3)	0.23	[0.19-0.27] unit increase	Affymetrix [10572788] (imputed)	N
960	chr19	49206461	49206462	rs681343	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	19q13.33	FUT2	rs681343-C	0.52	4E-30		1.11	[1.1-1.12]	Illumina [at least 560000] (imputed)	N
960	chr19	49206461	49206462	rs681343	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.33	FUT2	rs681343-T	0.526442405	5E-6		1.0764673	[1.04-1.11]	Illumina [10439017] (imputed)	N
960	chr19	49206461	49206462	rs681343	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	19q13.33	FUT2	rs681343-T	0.46	3E-6		1.11	[1.06-1.17]	Affymetrix, Illumina [7891602] (imputed)	N
960	chr19	49206461	49206462	rs681343	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	19q13.33	FUT2	rs681343-?	NR	4E-30		1.1049724	[1.09-1.12]	Illumina [13754664] (imputed)	N
960	chr19	49206461	49206462	rs681343	24326010	Xavier JM	2013-12-10	Ann Rheum Dis	FUT2: filling the gap between genes and environment in Behcet's disease?	Behcet's disease	292 Iranian ancestry cases, 294 Iranian ancestry controls	684 Iranian ancestry cases, 532 Iranian ancestry controls, 1,215 Turkish ancestry cases, 1,278 Turkish ancestry controls	19q13.33	FUT2	rs681343-T	0.435	5E-9		1.3	[1.19-1.41]	Affymetrix [868254]	N
960	chr19	49206602	49206603	rs281377	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG1A	5,350 Icelandic ancestry individuals	NA	19q13.33		rs281377-T	0.3458	2E-19		0.165359	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206602	49206603	rs281377	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	19q13.33	FUT2	rs281377-C	NR	2E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
960	chr19	49206602	49206603	rs281377	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	19q13.33	NR	rs281377-?	NR	5E-7		0.0321	[0.02-0.045] unit decrease	Illumina [at least 560000] (imputed)	N
960	chr19	49206602	49206603	rs281377	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	19q13.33	FUT2	rs281377-C	0.37	7E-6		56.516937	[31.89-81.15] kcal/day decrease	Affymetrix [491265]	N
960	chr19	49206602	49206603	rs281377	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	19q13.33	FUT2	rs281377-T	0.43	1E-15		1.8	[0.80-2.80] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
960	chr19	49206630	49206631	rs1047781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	6,293 European ancestry cases, 467,985 European ancestry controls, 12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	19q13.33		rs1047781-T	NR	2E-8		0.0843	[0.055-0.114] unit increase	Affymetrix, Illumina [25842546] (imputed)	N
960	chr19	49206630	49206631	rs1047781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric ulcer	12,650 East Asian ancestry cases, 161,227 East Asian ancestry controls	NA	19q13.33		rs1047781-T	0.403074231	2E-8		0.084440805	[0.055-0.114] unit increase	Illumina [13429311] (imputed)	N
960	chr19	49206630	49206631	rs1047781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.33		rs1047781-T	0.403720401	1E-11		0.11765751	[0.084-0.152] unit increase	Illumina [13429768] (imputed)	N
960	chr19	49206630	49206631	rs1047781	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	19q13.33	FUT2	rs1047781-C	NR	4E-8		1.183432	[1.15-1.22]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
960	chr19	49206630	49206631	rs1047781	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	FUT2	rs1047781-?		1E-56				Illumina [709211] (imputed)	N
960	chr19	49206630	49206631	rs1047781	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19q13.33	FUT2, CA11	rs1047781-T	0.46	8E-176	(CA19-9)	0.444	[0.41-0.48] U/ml increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49206630	49206631	rs1047781	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	19q13.33	FUT2	rs1047781-T	0.46	6E-209	(CEA)	0.238	[0.21-0.26] ng/ml increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49206630	49206631	rs1047781	22367966	Lin X	2012-02-24	Hum Mol Genet	Genome-wide association study identifies novel loci associated with serum level of vitamin B12 in Chinese men.	Vitamin B12 levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	19q13.33	FUT2	rs1047781-?	NR	4E-36		70.21	[59.37-81.05] pg/ml increase	Illumina [1940245] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PNLIPRP2	5,366 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	3E-19		0.175136	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LPO	5,364 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	4E-25		0.199456	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LCT	5,365 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	3E-23		0.191828	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF19	5,368 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	6E-20		0.177381	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGF19	5,368 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	1E-16		0.161041	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3D	5,367 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	1E-110		0.416098	[0.38-0.45] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,368 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	4E-12		0.13431	[0.096-0.172] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL25	5,366 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	3E-13		0.143202	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFA2	5,368 Icelandic ancestry individuals	NA	19q13.33		rs601338-G	0.3988	1E-143		0.473725	[0.44-0.51] unit decrease	Illumina [7506463] (imputed)	N
960	chr19	49206673	49206674	rs601338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19q13.33		rs601338-A	NR	1E-15		0.0449	[0.034-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
960	chr19	49206673	49206674	rs601338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.33		rs601338-A	NR	6E-24		0.0244	[0.02-0.029] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
960	chr19	49206673	49206674	rs601338	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (difucosyllactose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs601338-?	NR	8E-50				Illumina [1128286]	N
960	chr19	49206673	49206674	rs601338	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	19q13.33	FUT2	rs601338-G	0.484	7E-16		0.028	[0.021-0.035] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
960	chr19	49206673	49206674	rs601338	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-10 levels	21,758 European ancestry individuals	9,173 individuals	19q13.33		rs601338-A	0.45	2E-34		0.1196	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
960	chr19	49206673	49206674	rs601338	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CCL25 levels	982 Scottish ancestry individuals	NA	19q13.33	NR	rs601338-A	0.54761	1E-17		0.39255	[0.3-0.48] unit decrease	Illumina [7903493] (imputed)	N
960	chr19	49206673	49206674	rs601338	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	19q13.33	FUT2	rs601338-G	0.49204	2E-11		0.00938062	[0.0066-0.0121] unit increase	Affymetrix [12370749]	N
960	chr19	49206673	49206674	rs601338	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.33	FUT2	rs601338-G		3E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
960	chr19	49206673	49206674	rs601338	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.33	NR	rs601338-G	0.489638	3E-27		0.0227955	[0.019-0.027] unit decrease	NR [NR]	N
960	chr19	49206673	49206674	rs601338	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum carcinoembryonic antigen levels	22,309 Icelandic ancestry individuals	NA	19q13.33	FUT2	rs601338-G	0.393	5E-130		0.27	[0.29-0.25] unit decrease	Illumina [NR] (imputed)	N
960	chr19	49206673	49206674	rs601338	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 19.9 levels	9,945 Icelandic ancestry individuals	NA	19q13.33	FUT2	rs601338-G	0.393	1E-291		0.57	[0.61-0.54] unit decrease	Illumina [NR] (imputed)	N
960	chr19	49206673	49206674	rs601338	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	19q13.33	FUT2	rs601338-G	0.489712	1E-15		0.044931922	[0.034-0.056] unit decrease	Affymetrix [7288503] (imputed)	N
960	chr19	49206673	49206674	rs601338	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	19q13.33	FUT2	rs601338-?		9E-22		1.098901	[1.08-1.11]	Affymetrix, Illumina [43000000] (imputed)	N
960	chr19	49206673	49206674	rs601338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs601338-A	0.507	9E-111	(Protein FAM3D, FAM3D.13102.1.3)	0.51	[0.47-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206673	49206674	rs601338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs601338-A	0.507	4E-22	(C-C motif chemokine 15, CCL15.3509.1.1)	0.23	[0.19-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206673	49206674	rs601338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs601338-A	0.507	2E-13	(Fibroblast growth factor 19, FGF19.2762.30.2)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206673	49206674	rs601338	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	FUT2	rs601338-A	0.507	1E-28	(Golgi membrane protein 1, GOLM1.8983.7.3)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
960	chr19	49206673	49206674	rs601338	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	19q13.33	NR	rs601338-?	NR	4E-7		0.0198	[0.012-0.027] unit increase	Illumina [at least 560000] (imputed)	N
960	chr19	49206673	49206674	rs601338	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	19q13.33	FUT2	rs601338-A	0.43	2E-20	(ADSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.055	[0.043-0.067] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
960	chr19	49206673	49206674	rs601338	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.33	FUT2	rs601338-A	0.43	3E-11	(ADpSGEGDFXAEGGGVR)	0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	8E-13		0.0342	[0.025-0.044] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	1E-12		0.0339	[0.024-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	7E-26		0.0502	[0.041-0.06] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	1E-9		0.0303	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	3E-13		0.0349	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	7E-15		0.0371	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49206725	49206726	rs1800027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs1800027-T	NR	8E-15		0.0372	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-10		0.0259552	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	2E-10		0.0263988	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-13		0.0299137	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	2E-12		0.0289459	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	4E-15		0.0317011	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-13		0.0299659	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	8E-14		0.0307096	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	1E-9		0.0251064	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-11		0.0274148	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	6E-12		0.028308	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	5E-8		0.0224655	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	4E-9		0.0243617	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	1E-10		0.0263396	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	4E-12		0.0285857	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	1E-12		0.029257	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-11		0.0272464	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	5E-11		0.0269861	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-10		0.0260331	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	2E-11		0.02753	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	8E-13		0.0293429	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-12		0.0286832	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	1E-11		0.0270389	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	6E-10		0.0256144	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	3E-10		0.0260177	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	1E-12		0.0289967	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	19q13.33		rs602662-G	0.465629	6E-13		0.0297244	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49206984	49206985	rs602662	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GOLM1	5,362 Icelandic ancestry individuals	NA	19q13.33		rs602662-G	0.3761	4E-26		0.200625	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49206984	49206985	rs602662	28334792	Nongmaithem SS	2017-02-27	Hum Mol Genet	GWAS identifies population-specific new regulatory variants in FUT6 associated with plasma B12 concentrations in Indians.	Vitamin B12 levels	1,001 Indo-European ancestry adults	1,713 Indo-European ancestry adults, 690 Indo-European ancestry children, 481 Dravidian ancestry adults, 534 Dravidian ancestry children	19q13.33	FUT2	rs602662-A	NR	6E-13		0.18	[NR] pmol/l increase	Affymetrix [8900000] (imputed)	N
960	chr19	49206984	49206985	rs602662	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	19q13.33	FUT2	rs602662-G	0.49	5E-8				Illumina [7347414] (imputed)	N
960	chr19	49206984	49206985	rs602662	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	19q13.33	FUT2	rs602662-?	0.44	2E-15	(Plasma Vitamin B12)	0.07	[0.050-0.090] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
960	chr19	49206984	49206985	rs602662	19303062	Tanaka T	2009-03-18	Am J Hum Genet	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	19q13.33	FUT2	rs602662-A	0.53	3E-20	(vitamin B12)	49.77	[37.09-62.45] pg/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	9E-15		0.0309981	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	2E-13		0.0294309	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	4E-14		0.0302447	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	19q13.33		rs485186-A	0.464289	6E-13		0.0278704	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	4E-9		0.0234094	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	4E-12		0.0284822	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	7E-17		0.0332782	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	4E-16		0.0318272	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	1E-11		0.0274216	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	9E-14		0.0298503	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs485186-A	0.464343	3E-12		0.0279368	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207205	49207206	rs485186	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTNL8	5,366 Icelandic ancestry individuals	NA	19q13.33		rs485186-A	0.3769	2E-26		0.209835	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49207205	49207206	rs485186	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-tetrose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs485186-?	NR	4E-11				Illumina [1128286]	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.33		rs603985-T	0.466375	1E-13		0.0292214	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	19q13.33		rs603985-T	0.466375	8E-14		0.030418	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	19q13.33		rs603985-T	0.466321	2E-11		0.0261296	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	19q13.33		rs603985-T	0.466321	8E-11		0.0254745	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	19q13.33		rs603985-T	0.466321	6E-11		0.0253584	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs603985-T	0.466375	3E-10		0.0260694	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207256	49207257	rs603985	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	19q13.33		rs603985-?	NR	3E-8		0.019	NR unit increase	NR [4428082] (imputed)	N
960	chr19	49207553	49207554	rs571689	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs571689-C	0.466793	7E-12		0.0283312	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207650	49207651	rs570794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs570794-T	0.466795	1E-18		0.0352927	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
960	chr19	49207791	49207792	rs2251034	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (sialyl-lacto-N-tetraose b)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs2251034-?	NR	1E-9				Illumina [1128286]	N
960	chr19	49208367	49208368	rs2432132	34532061	Hodel F	2021-06-11	Virus Evol	Human genomics of the humoral immune response against polyomaviruses.	Anti-JC polyomavirus IgG seropositivity	8,567 European ancestry antibody-positive cases cases, up to 6,836 European ancestry antibody-negative controls	NA	19q13.33		rs2432132-?	NR	2E-15				Affymetrix [NR] (imputed)	N
960	chr19	49208367	49208368	rs2432132	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-polyomavirus 2 IgG seropositivity	8,735 White British ancestry individuals	NA	19q13.33	FUT2	rs2432132-C	0.38	9E-15		0.06	[0.044-0.076] unit decrease	NR [25472218] (imputed)	N
960	chr19	49208367	49208368	rs2432132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs2432132-T	0.594019	7E-10				Affymetrix, Illumina [24558453] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	1E-11		0.0281606	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	2E-19		0.0366289	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	3E-18		0.0354373	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	3E-12		0.0287195	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	3E-9		0.0244249	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	1E-10		0.0265029	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	8E-13		0.0296517	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	2E-11		0.0276699	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	8E-20		0.0371142	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	2E-12		0.0290113	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	9E-10		0.0253404	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	1E-11		0.0282107	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	4E-12		0.0285482	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	1E-12		0.0292535	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	4E-13		0.0301025	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208542	49208543	rs507766	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs507766-T	0.468064	7E-13		0.0296761	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208864	49208865	rs504963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs504963-G	0.467093	3E-19		0.0363855	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208864	49208865	rs504963	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs504963-G	0.467093	8E-18		0.0342769	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
960	chr19	49208864	49208865	rs504963	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	19q13.33	FUT2	rs504963-A	0.431	2E-8				Illumina [304825]	N
960	chr19	49208977	49208978	rs632111	25028398	Weiss FU	2014-07-15	Gut	Fucosyltransferase 2 (FUT2) non-secretor status and blood group B are associated with elevated serum lipase activity in asymptomatic subjects, and an increased risk for chronic pancreatitis: a genetic association study.	Serum lipase activity	3,966 European ancestry individuals	1,444 European ancestry individuals	19q13.33	FUT2	rs632111-G	0.43	6E-9		0.04	[0.026-0.054] unit increase	Affymetrix [NR] (imputed)	N
960	chr19	49209009	49209010	rs503279	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	19q13.33	FUT2	rs503279-T	0.53	1E-13	(DSGEGDFXAEGGGVR/ADpSGEGDFXAEGGGVR)	0.045	[0.033-0.057] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
960	chr19	49209009	49209010	rs503279	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	19q13.33	FUT2	rs503279-C	0.464	4E-20	(SM-11 + 2 other traits)	0.129	[NR] unit increase	Affymetrix, Illumina [534665]	N
960	chr19	49209565	49209566	rs1704773	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	19q13.33		rs1704773-?	NR	4E-9		0.044	[0.03-0.058] unit decrease	Affymetrix [9906178] (imputed)	N
960	chr19	49209565	49209566	rs1704773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs1704773-G	0.511002	2E-11				Affymetrix, Illumina [24653286] (imputed)	N
960	chr19	49209565	49209566	rs1704773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.33	NR	rs1704773-G	0.524158	1E-13		0.013793	[0.01-0.017] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
960	chr19	49209565	49209566	rs1704773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.33	NR	rs1704773-G	0.524405	7E-12		0.012771	[0.0091-0.0164] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
960	chr19	49209850	49209851	rs646327	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	19q13.33	FUT2	rs646327-?	NR	3E-9		0.063	[0.041-0.085] unit decrease	NR [7682250] (imputed)	N
960	chr19	49211143	49211144	rs202155306	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.33	FUT2	rs202155306-G	0.668407	1E-300		0.0126941	[0.012-0.013] unit increase	Affymetrix [13995440] (imputed)	N
960	chr19	49211831	49211832	rs76226641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic sinusitis	7,529 European ancestry cases, 444,966 European ancestry controls, 4,617 East Asian ancestry cases, 152,226 East Asian ancestry controls	NA	19q13.33		rs76226641-G	NR	5E-8		0.129	[0.083-0.175] unit increase	Affymetrix, Illumina [25838895] (imputed)	N
960	chr19	49213283	49213284	rs584768	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	19q13.33	NR	rs584768-A	0.53	1E-8		0.084	[0.055-0.113] unit increase	Affymetrix [10972371] (imputed)	N
960	chr19	49213503	49213504	rs2452170	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	19q13.33		rs2452170-?	NR	2E-8				Illumina [NR] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	NR	1E-8		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	0.497	6E-8	(EA)	0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	NR	7E-22		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	0.497	2E-19	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	NR	2E-17		0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213503	49213504	rs2452170	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs2452170-G	0.497	9E-16	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
960	chr19	49213530	49213531	rs200433550	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19q13.33	F3	rs200433550-TA	0.58	6E-10		0.16	unit increase	Illumina [5270624] (imputed)	N
960	chr19	49213870	49213871	rs35728097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	19q13.33		rs35728097-A	NR	6E-11		0.0955	[0.067-0.124] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
960	chr19	49213870	49213871	rs35728097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	19q13.33		rs35728097-A	NR	5E-18		0.0203	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
960	chr19	49214273	49214274	rs281379	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FUT3	5,361 Icelandic ancestry individuals	NA	19q13.33		rs281379-G	0.384	3E-16		0.157134	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
960	chr19	49214273	49214274	rs281379	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	19q13.33	MAMSTR, FUT2	rs281379-G	NR	3E-9		1.18	[1.11-1.25]	Illumina [up to 525976] (imputed)	N
960	chr19	49214273	49214274	rs281379	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	19q13.33	NR	rs281379-A	0.508	4E-21		0.0125087	[0.0099-0.0151] unit increase	NR [~ 9732723] (imputed)	N
960	chr19	49214273	49214274	rs281379	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	19q13.33	NR	rs281379-A	0.508	5E-21		0.013722336	[0.011-0.017] unit increase	NR [~ 10000000] (imputed)	N
960	chr19	49214273	49214274	rs281379	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	7,161 European ancestry males, 6,879 European ancestry females	5,133 European ancestry males, 4,577 European ancestry females	19q13.33	MAMSTR	rs281379-G	0.52	5E-8	(Single Height-males)	0.07	[0.043-0.097] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
960	chr19	49214273	49214274	rs281379	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	19q13.33	FUT2, RASIP1	rs281379-A	0.487	7E-12		1.07	[1.04-1.11]	Affymetrix, Illumina [953241] (imputed)	N
960	chr19	49214469	49214470	rs281380	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	19q13.33	MAMSTR	rs281380-T	0.563	1E-9		0.0021	[0.0015-0.0027] unit decrease	Affymetrix [NR] (imputed)	N
960	chr19	49214469	49214470	rs281380	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.33	MAMSTR	rs281380-T	0.5628	7E-17		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
960	chr19	49214469	49214470	rs281380	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	19q13.33	MAMSTR	rs281380-T	0.6264	7E-15		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
960	chr19	49214469	49214470	rs281380	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	19q13.33	MAMSTR	rs281380-T	0.5628	3E-7		0.0041	[0.0025-0.0057] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
960	chr19	49214469	49214470	rs281380	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.33	MAMSTR	rs281380-G	NR	2E-6	(Conditioned on rs2303759)	1.08	[1.07-1.09]	Illumina [465434]	N
960	chr19	49215094	49215095	rs4002471	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative fat intake	175,253 European ancestry individuals	93,179 European ancestry individuals	19q13.33	NR	rs4002471-?		9E-26		0.029	[0.023-0.035] unit decrease	Affymetrix [NR]	N
960	chr19	49215094	49215095	rs4002471	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	19q13.33	NR	rs4002471-T	0.4504	2E-14				Affymetrix, Illumina [at least 2500000] (imputed)	N
960	chr19	49217304	49217305	rs281386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19q13.33	MAMSTR	rs281386-G	NR	4E-8		0.0165621	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
960	chr19	49217304	49217305	rs281386	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	19q13.33	RASIP1, FUT2	rs281386-G	0.591	5E-8		5.46	NR z score increase	Illumina [26237160] (imputed)	N
960	chr19	49218059	49218060	rs35866622	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		19q13.33	FUT2, MAMSTR, RASIP1	rs35866622-C	NR	2E-15		0.01175	[0.0076-0.0159] nmol/l decrease	NR [19000000] (imputed)	N
960	chr19	49218059	49218060	rs35866622	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcus torques group id.14377)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	19q13.33		rs35866622-T	NR	2E-8		5.5944386	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	19q13.33	FUT2	rs35866622-?	NR	3E-10		1.184	[0.78-1.58] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.33	MAMSTR	rs35866622-T	NR	4E-10				Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.33	MAMSTR	rs35866622-T	NR	2E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.33	MAMSTR	rs35866622-T	NR	4E-9				Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.33	MAMSTR	rs35866622-T	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.33	MAMSTR	rs35866622-T	NR	7E-6		0.01	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.33	MAMSTR	rs35866622-T	NR	2E-26				Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.33	MAMSTR	rs35866622-T	NR	2E-20	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.33	MAMSTR	rs35866622-T	NR	5E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.33	MAMSTR	rs35866622-T	NR	3E-30				Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.33	MAMSTR	rs35866622-T	NR	5E-14	(EA)	1.403	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.33	MAMSTR	rs35866622-T	NR	3E-19		1.543	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.33	MAMSTR	rs35866622-T	NR	5E-11		1.449	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218059	49218060	rs35866622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.33	MAMSTR	rs35866622-T	NR	4E-6	(EA)	1.165	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
960	chr19	49218110	49218111	rs33988101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	19q13.33	MAMSTR	rs33988101-G	NR	5E-12		0.0196191	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
960	chr19	49218110	49218111	rs33988101	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs33988101-?	NR	6E-10	(female)	0.0206099	[0.014-0.027] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49218110	49218111	rs33988101	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19q13.33	FUT2, RASIP1	rs33988101-T	0.48	6E-10		0.14	unit increase	Illumina [5270624] (imputed)	N
960	chr19	49218601	49218602	rs12979278	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	19q13.33	NR	rs12979278-T	0.53	6E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
960	chr19	49219458	49219459	rs660745	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	19q13.33		rs660745-T	0.52	2E-27		0.0864	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
960	chr19	49219458	49219459	rs660745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs660745-C	0.434211	1E-15				Affymetrix, Illumina [24588908] (imputed)	N
960	chr19	49220322	49220323	rs11672900	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	19q13.33	MAMSTR	rs11672900-A	0.47	5E-14		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
960	chr19	49220322	49220323	rs11672900	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	19q13.33	MAMSTR	rs11672900-A	0.47	3E-14		0.042	[0.031-0.053] unit decrease	Affymetrix [at least 8900000] (imputed)	N
960	chr19	49221203	49221204	rs381254	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	19q13.33	NR	rs381254-?	NR	1E-8	(conditional on round 4)	0.036126122	[0.024-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
960	chr19	49225765	49225766	rs11882796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.33		rs11882796-T	NR	2E-17		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
960	chr19	49225765	49225766	rs11882796	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.33	RASIP1	rs11882796-T	0.54	3E-14		7.59	z-score increase	Affymetrix [4314223] (imputed)	N
960	chr19	49225765	49225766	rs11882796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.33	RASIP1	rs11882796-T	0.542088	7E-11		0.014724647	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
960	chr19	49225765	49225766	rs11882796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.33	NR	rs11882796-T	0.534871	2E-17		0.015707	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
960	chr19	49225765	49225766	rs11882796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs11882796-A	0.476252	1E-43				Affymetrix, Illumina [17210439] (imputed)	N
960	chr19	49225765	49225766	rs11882796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.33	NR	rs11882796-A	0.460853	2E-45		0.027327	[0.024-0.031] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
960	chr19	49225765	49225766	rs11882796	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	19q13.33	RASIP1	rs11882796-A	NR	2E-14		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
960	chr19	49227042	49227043	rs11666792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.33		rs11666792-A	NR	4E-15		0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
960	chr19	49227042	49227043	rs11666792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.33		rs11666792-A	NR	1E-90		0.045	[0.041-0.049] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
960	chr19	49227042	49227043	rs11666792	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	19q13.33	RASIP1	rs11666792-G	0.463484	4E-124		0.0120227	[0.011-0.013] unit decrease	Affymetrix [13995440] (imputed)	N
960	chr19	49228271	49228272	rs2287921	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (2'-fucosyllactose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	19q13.33		rs2287921-?	NR	2E-23				Illumina [1128286]	N
960	chr19	49228271	49228272	rs2287921	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	19q13.33	RASIP1	rs2287921-T	NR	3E-8				NR [2501749] (imputed)	N
960	chr19	49228271	49228272	rs2287921	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	19q13.33	RASIP1	rs2287921-C	0.471	9E-7	(Vitamin B12)	0.14	[NR] unit increase	Illumina [737081]	N
960	chr19	49228271	49228272	rs2287921	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.33	FUT2	rs2287921-C	0.48	7E-19	(5.2825, Fucose)	0.37	[NR] unit increase	Illumina [713870] (imputed)	N
960	chr19	49228271	49228272	rs2287921	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.33	FUT2	rs2287921-C	0.48	3E-36	(5.2125, Fucose)	0.48	[NR] unit increase	Illumina [713870] (imputed)	N
960	chr19	49228271	49228272	rs2287921	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.33	FUT2	rs2287921-C	0.48	1E-12	(5.2275, Fucose)	0.3	[NR] unit increase	Illumina [713870] (imputed)	N
960	chr19	49228271	49228272	rs2287921	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	19q13.33	SPHK2, SEC1, RPL18, NTN5, FAM83E, DBP, FUT2, IZUMO1, FUT1, CA11, MAMSTR, FGF21, RASIP1	rs2287921-C	NR	3E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
960	chr19	49228271	49228272	rs2287921	21060863	Ikram MK	2010-10-28	PLoS Genet	Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.	Retinal vascular caliber	15,358 European ancestry individuals	6,652 European ancestry individuals	19q13.33	FUT2, IZUMO1, FUT1, CA11, FGF21, FLJ36070, RASIP1	rs2287921-T	0.47	2E-25	(Retinal venular caliber)	2.1	[1.71-2.49] um decrease	Affymetrix, Illumina [2194468] (imputed)	N
960	chr19	49229068	49229069	rs35851152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs35851152-A	NR	4E-17		0.0372	[0.029-0.046] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49229524	49229525	rs8112983	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	19q13.33	DBP, CA11, NTN5, FUT2, MAMSTR, FAM83E, SPACA4, RPL18, SPHK2, RASIP1, IZUMO1, FUT1, FGF21	rs8112983-?	NR	2E-16		0.0113389	[0.0065-0.0161] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49229524	49229525	rs8112983	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	19q13.33	FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, NTN5, FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs8112983-?	NR	2E-16		0.0200424	[0.015-0.025] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49232225	49232226	rs2287922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.33	RASIP1	rs2287922-A	0.536105	4E-32		0.02654099	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr19	49232225	49232226	rs2287922	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	19q13.33	FUT2	rs2287922-?	NR	1E-11		1.289	[0.91-1.67] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
960	chr19	49232225	49232226	rs2287922	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	19q13.33	RASIP1	rs2287922-A	0.4966	3E-9		0.0184	[0.012-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49232225	49232226	rs2287922	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	19q13.33	RASIP1	rs2287922-A	0.5155	5E-9		0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49232225	49232226	rs2287922	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	19q13.33	RASIP1	rs2287922-A	0.4943	2E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49232225	49232226	rs2287922	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	19q13.33	RASIP1	rs2287922-A	0.5134	2E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49232225	49232226	rs2287922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.33		rs2287922-?	NR	1E-8				NR [~ 8900000] (imputed)	N
960	chr19	49232225	49232226	rs2287922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs2287922-?	NR	2E-11				NR [~ 8900000] (imputed)	N
960	chr19	49232225	49232226	rs2287922	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.33	RASIP1	rs2287922-A	0.5342	1E-11		0.02448993	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
960	chr19	49233405	49233406	rs281408	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	19q13.33	FUT2	rs281408-C	0.45	4E-32	(1.2575, Fucose)	0.42	[NR] unit increase	Illumina [713870] (imputed)	N
960	chr19	49236101	49236102	rs439523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.33		rs439523-?	NR	3E-17				NR [~ 8900000] (imputed)	N
960	chr19	49236464	49236465	rs60068692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	19q13.33		rs60068692-A	NR	4E-12		0.0248	[0.018-0.032] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
960	chr19	49239025	49239026	rs418464	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	19q13.33	SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, NTN5, FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs418464-?	NR	3E-16		0.0199381	[0.015-0.025] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49239025	49239026	rs418464	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs418464-?	NR	3E-10		0.0153294	[0.011-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
960	chr19	49241013	49241014	rs380743	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.33	NTN5, FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs380743-?	NR	7E-13		0.0175022	[0.013-0.022] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49241013	49241014	rs380743	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	19q13.33	RASIP1	rs380743-?	NR	4E-22	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
960	chr19	49241014	49241015	rs427248	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs427248-?	NR	4E-9	(female)	0.0195633	[0.013-0.026] unit increase	Affymetrix [25921788] (imputed)	N
960	chr19	49241975	49241976	rs973579	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	19q13.33	NR	rs973579-G	0.4895	8E-19		0.018226894	[0.014-0.022] unit increase	Affymetrix [10613246] (imputed)	N
960	chr19	49241975	49241976	rs973579	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	19q13.33	NR	rs973579-G	0.462	3E-20		0.015974265	[0.013-0.019] unit increase	Affymetrix [NR] (imputed)	N
960	chr19	49244219	49244220	rs2307019	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	19q13.33	IZUMO1	rs2307019-G	0.5603	6E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49244219	49244220	rs2307019	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	19q13.33	IZUMO1	rs2307019-G	0.5634	4E-8		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49244219	49244220	rs2307019	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	19q13.33	IZUMO1	rs2307019-G	0.5577	5E-8		0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49244219	49244220	rs2307019	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	19q13.33	IZUMO1	rs2307019-G	0.5628	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [at least 228985]	N
960	chr19	49246865	49246866	rs838147	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	NR	rs838147-A	0.48	7E-7	(Carbohydrate)	0.22	[0.14-0.3] % increase	Affymetrix, Illumina [2500000] (imputed)	N
960	chr19	49248051	49248052	rs838146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs838146-C	0.499792	2E-14		0.031199	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
960	chr19	49248051	49248052	rs838146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19q13.33		rs838146-C	0.499792	3E-9		0.0242633	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
960	chr19	49248729	49248730	rs838145	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19q13.33		rs838145-A	NR	7E-36		0.0293	[0.025-0.034] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
960	chr19	49248729	49248730	rs838145	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.33	IZUMO1	rs838145-A	0.542572	6E-19		0.019915722	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
960	chr19	49248729	49248730	rs838145	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	19q13.33	IZUMO1, RASIP1, FUT1	rs838145-A	0.55	3E-15		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
960	chr19	49248729	49248730	rs838145	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	19q13.33	IZUMO1	rs838145-A	0.541	9E-12		0.0174	[0.012-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
960	chr19	49248729	49248730	rs838145	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	19q13.33	FUT1	rs838145-A	0.5417	2E-11		0.015065683	[0.011-0.019] unit decrease	Affymetrix [11514936] (imputed)	N
960	chr19	49248729	49248730	rs838145	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	FGF21	rs838145-G	0.46	4E-10	(Fat)	0.22	[0.14-0.3] % decrease	Affymetrix, Illumina [2500000] (imputed)	N
960	chr19	49248729	49248730	rs838145	23636237	Tanaka T	2013-05-01	Am J Clin Nutr	Genome-wide meta-analysis of observational studies shows common genetic variants associated with macronutrient intake.	Dietary macronutrient intake	37,537 European ancestry individuals	33,533 European ancestry individuals	19q13.33	FGF21	rs838145-G	0.46	3E-7	(Carbohydrate)	0.23	[0.15-0.31] % increase	Affymetrix, Illumina [2500000] (imputed)	N
960	chr19	49249442	49249443	rs12975033	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	19q13.33	IZUMO1	rs12975033-A	0.55	1E-6	(EA)	0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
960	chr19	49250238	49250239	rs838144	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs838144-?	NR	8E-12		0.0166861	[0.012-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
960	chr19	49250238	49250239	rs838144	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs838144-?	NR	3E-9		0.0145131	[0.0097-0.0193] unit decrease	Affymetrix [25921788] (imputed)	N
960	chr19	49250238	49250239	rs838144	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	19q13.33	IZUMO1	rs838144-T	0.5299	4E-24		0.0087	[0.0069-0.0105] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
960	chr19	49250656	49250657	rs28400014	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	19q13.33	FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs28400014-?	NR	2E-11		0.0165221	[0.012-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
960	chr19	49250671	49250672	rs28400013	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	19q13.33	IZUMO1;FUT1	rs28400013-?	NR	3E-76		0.08864	[0.079-0.098] unit decrease novel	Illumina [6108953] (imputed)	N
960	chr19	49252150	49252151	rs838142	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	19q13.33	FUT1	rs838142-A	0.723	1E-12	(EA)	0.016	[0.012-0.02] unit increase	NR [12082474] (imputed)	N
960	chr19	49252150	49252151	rs838142	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	19q13.33	FUT1	rs838142-A	0.7203	9E-14		0.017184	[0.013-0.022] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
960	chr19	49252150	49252151	rs838142	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	19q13.33	FUT1	rs838142-A	0.723	1E-9		0.01189	[0.008-0.0157] unit increase	Affymetrix [11709857] (imputed)	N
960	chr19	49252150	49252151	rs838142	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	19q13.33	FUT1	rs838142-A	0.723	3E-10		0.01174	[0.0081-0.0154] unit increase	Affymetrix [11709857] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	5E-10		0.0167	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	1E-22		0.0259	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	5E-32		0.0311	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	7E-16		0.0223	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	2E-124		0.0627	[0.058-0.068] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	1E-22		0.0271	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	2E-29		0.0298	[0.025-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	2E-10		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	1E-30		0.0304	[0.025-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49253260	49253261	rs4021	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs4021-G	NR	1E-26		0.0283	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49254503	49254504	rs2071699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs2071699-A	NR	2E-13		0.0659	[0.048-0.084] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49254503	49254504	rs2071699	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	19q13.33	FUT1	rs2071699-?		3E-10				Illumina [709211] (imputed)	N
960	chr19	49254954	49254955	rs8103840	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.33	FUT1	rs8103840-?		4E-68		0.0749	[0.066-0.083] unit decrease	Illumina [31500000] (imputed)	N
960	chr19	49254954	49254955	rs8103840	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	19q13.33	FUT1	rs8103840-C	0.53	6E-7		0.83	[0.5-1.16] g/day increase	Affymetrix [10353649] (imputed)	N
960	chr19	49259528	49259529	rs838133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.33		rs838133-G	NR	1E-23		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
960	chr19	49259528	49259529	rs838133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	19q13.33		rs838133-G	NR	2E-66		0.0409	[0.036-0.046] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
960	chr19	49259528	49259529	rs838133	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	19q13.33		rs838133-A	0.41	9E-12		0.0573	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
960	chr19	49259528	49259529	rs838133	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative sugar intake	175,253 European ancestry individuals	59,454 European ancestry individuals	19q13.33	FGF21	rs838133-?		3E-20		0.03	[0.024-0.036] unit increase	Affymetrix [NR]	N
960	chr19	49259528	49259529	rs838133	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative protein intake	175,253 European ancestry individuals	93,179 European ancestry individuals	19q13.33	FGF21	rs838133-?		4E-26		0.032	[0.026-0.038] unit decrease	Affymetrix [NR]	N
960	chr19	49259528	49259529	rs838133	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	19q13.33	FGF21	rs838133-?		7E-15		0.023	[0.017-0.029] unit increase	Affymetrix [NR]	N
960	chr19	49259528	49259529	rs838133	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.33	FGF21	rs838133-A	0.450496	2E-33		0.0248079	[0.021-0.029] unit increase	Affymetrix [NR] (imputed)	N
960	chr19	49259528	49259529	rs838133	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19q13.33	FGF21	rs838133-?	NR	9E-18		0.0232	[0.018-0.028] unit increase	Affymetrix [5701386] (imputed)	N
960	chr19	49259528	49259529	rs838133	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	19q13.33	MLIP	rs838133-A	0.450813	2E-25	(EA)	0.0133353	[0.011-0.016] unit decrease	Affymetrix [~ 8800000] (imputed)	N
960	chr19	49259528	49259529	rs838133	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.33	FGF21	rs838133-A	0.4204	8E-13		0.0231	[0.017-0.029] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
960	chr19	49259528	49259529	rs838133	29988085	Merino J	2018-07-09	Mol Psychiatry	Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium.	Dietary macronutrient intake	91,114 European ancestry individuals	177,315 European ancestry individuals	19q13.33	FGF21	rs838133-A	0.45	9E-23	(Carbohydrate)	0.232	[0.18-0.28] % increase	Affymetrix, Illumina [1180000] (imputed)	N
960	chr19	49259528	49259529	rs838133	29988085	Merino J	2018-07-09	Mol Psychiatry	Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium.	Dietary macronutrient intake	91,114 European ancestry individuals	177,315 European ancestry individuals	19q13.33	FGF21	rs838133-A	0.45	5E-28	(Protein)	0.111	[0.091-0.131] % decrease	Affymetrix, Illumina [1180000] (imputed)	N
960	chr19	49259528	49259529	rs838133	29988085	Merino J	2018-07-09	Mol Psychiatry	Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium.	Dietary macronutrient intake	91,114 European ancestry individuals	177,315 European ancestry individuals	19q13.33	FGF21	rs838133-A	0.45	1E-19	(Fat)	0.177	[0.14-0.22] % decrease	Affymetrix, Illumina [1180000] (imputed)	N
960	chr19	49259528	49259529	rs838133	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	19q13.33	FUT2	rs838133-A	0.45	7E-9		0.0422	[0.028-0.056] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
960	chr19	49259528	49259529	rs838133	23372041	Chu AY	2013-01-30	Hum Mol Genet	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	19q13.33	FUT2, IZUMO1, FUT1, FGF21, RASIP1	rs838133-A	0.45	8E-9	(Protein - model 2)	0.11	[0.071-0.149] percent decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
960	chr19	49259855	49259856	rs1698113	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.33		rs1698113-T	0.514513	2E-11		0.0292165	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
960	chr19	49260627	49260628	rs3826821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs3826821-A	NR	9E-46		0.0631	[0.054-0.072] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	5E-8		0.0225214	[0.014-0.031] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	2E-13		0.0309773	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	3E-15		0.0332653	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	6E-11		0.0274059	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	2E-12		0.0297155	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	3E-10		0.0267239	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	2E-12		0.028894	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	2E-13		0.03126	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	5E-15		0.0329923	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	19q13.33		rs739320-T	0.393335	6E-12		0.0290592	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs739320-T	0.393342	3E-10		0.0269937	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs739320-T	0.393342	2E-12		0.030032	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
960	chr19	49261367	49261368	rs739320	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs739320-T	0.393342	6E-11		0.0278563	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	2E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	9E-14		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	1E-74		0.0438	[0.039-0.049] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	5E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	2E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	3E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49262499	49262500	rs2548957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs2548957-A	NR	8E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	5E-9		0.0244042	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	8E-10		0.0260301	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398668	1E-11		0.0281411	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398668	3E-10		0.0261162	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398668	4E-9		0.0246579	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	4E-8		0.023617	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	2E-10		0.0270354	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	4E-8		0.0229452	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	3E-10		0.0269071	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398668	4E-11		0.0270833	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
960	chr19	49263476	49263477	rs2081194	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs2081194-G	0.398656	2E-8		0.0237397	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
960	chr19	49263885	49263886	rs78627671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs78627671-A	NR	9E-22		0.0497	[0.04-0.06] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49264546	49264547	rs9749209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs9749209-A	0.359252	3E-9		0.0251628	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
960	chr19	49264546	49264547	rs9749209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	19q13.33		rs9749209-A	0.359252	7E-9		0.0246177	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
960	chr19	49264546	49264547	rs9749209	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.33		rs9749209-A	0.359288	4E-8		0.0231469	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
960	chr19	49266389	49266390	rs499765	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.33		rs499765-C	0.661088	2E-9		0.0255461	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
960	chr19	49266389	49266390	rs499765	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	19q13.33		rs499765-C	0.661027	4E-8		0.023612	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
960	chr19	49266935	49266936	rs637174	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	19q13.33	FGF21	rs637174-A	0.341	2E-8		0.0161	[0.01-0.022] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
960	chr19	49266935	49266936	rs637174	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	19q13.33	FGF21	rs637174-A	0.341	2E-8		0.0161	[0.01-0.022] unit increase	Affymetrix [up to 73355667] (imputed)	N
960	chr19	49268193	49268194	rs653395	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	19q13.33	FGF21	rs653395-?	NR	1E-8		0.0453	NR L increase	Affymetrix [9390170] (imputed)	N
960	chr19	49270229	49270230	rs76576741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs76576741-A	NR	5E-10		0.0354	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49270871	49270872	rs62132802	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	19q13.33	NTN5, FUT2, MAMSTR, RASIP1, IZUMO1, FUT1, FGF21	rs62132802-?	NR	3E-8		0.0147719	[0.0096-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	5E-26		0.0281	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	2E-10		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	2E-26		0.0283	[0.023-0.034] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	4E-16		0.0226	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	2E-107		0.0585	[0.053-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	3E-19		0.025	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	9E-24		0.0268	[0.022-0.032] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	4E-14		0.0202	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	2E-33		0.032	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	5E-9		0.0156	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	1E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
960	chr19	49271582	49271583	rs62132803	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs62132803-T	NR	2E-23		0.0266	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
961	chr19	49289101	49289102	rs655772	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	19q13.33	FGF21, BCAT2	rs655772-T	0.48	5E-6		58.534138	[33.33-83.74] kcal/day decrease	Affymetrix [491265]	N
961	chr19	49298312	49298313	rs77623030	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs77623030-T	NR	9E-11		0.0278	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
961	chr19	49300430	49300431	rs35230038	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	19q13.33		rs35230038-G	0.954594	7E-23		0.0965787	[0.077-0.116] unit increase	NR [11722792] (imputed)	N
961	chr19	49304214	49304215	rs4801776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	19q13.33		rs4801776-C	0.700753	1E-18		0.0392475	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
961	chr19	49304214	49304215	rs4801776	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	19q13.33		rs4801776-C	0.700754	3E-13		0.0323134	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
961	chr19	49305420	49305421	rs12985962	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.33	BCAT2	rs12985962-C	0.962939	5E-15	(arabinose)	0.467	[0.35-0.58] unit decrease	Illumina [13039987] (imputed)	N
961	chr19	49305420	49305421	rs12985962	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	19q13.33	BCAT2	rs12985962-C	0.962939	5E-15	(arabinose)	0.467	[0.35-0.58] unit decrease	Illumina [13039987] (imputed)	N
961	chr19	49307847	49307848	rs41347145	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.33	NR	rs41347145-?	NR	1E-6				Affymetrix [NR]	N
961	chr19	49307998	49307999	rs837642	29970928	Zhu Z	2018-07-03	Eur J Hum Genet	Multi-level genomic analyses suggest new genetic variants involved in human memory.	Long-term memory (delayed word recall task)	1,522 Chinese ancestry individuals	1,862 Chinese ancestry individuals	19q13.33	BCAT2	rs837642-?	NR	4E-7		0.12	[0.061-0.179] unit increase	Illumina [up to 38219282] (imputed)	N
961	chr19	49309775	49309776	rs117048185	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	19q13.33		rs117048185-G	0.982738	3E-35		0.191237	[0.16-0.22] unit decrease	NR [11722792] (imputed)	N
961	chr19	49315991	49315992	rs3760788	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	19q13.33	HSD17B14	rs3760788-T	0.45	3E-6		61.29424	[35.78-86.81] kcal/day decrease	Affymetrix [491265]	N
961	chr19	49317459	49317459	rs10685064	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	19q13.33		rs10685064-A	0.521094	3E-21		0.0388876	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
961	chr19	49318379	49318380	rs35299026	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSD17B14	5,368 Icelandic ancestry individuals	NA	19q13.33		rs35299026-A	0.05136	6E-19		0.387747	[0.3-0.47] unit decrease	Illumina [7506463] (imputed)	N
961	chr19	49329432	49329433	rs632115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs632115-T	NR	3E-14		0.0192	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
961	chr19	49334247	49334248	rs473464	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	HSD17B14	rs473464-T	0.49828125	3E-8	(HSD17B14, 13972_4_3)	0.14543775	[0.094-0.197] unit increase	Illumina [> 1000000] (imputed)	N
961	chr19	49340857	49340858	rs10407029	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSD17B14	5,368 Icelandic ancestry individuals	NA	19q13.33		rs10407029-T	0.2517	7E-14		0.164734	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
961	chr19	49361662	49361663	rs73061632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.33	PLEKHA4	rs73061632-A	0.176715	2E-14		0.022403352	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49365276	49365277	rs117328695	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.33	PLEKHA4	rs117328695-G	0.176969	4E-33		0.0349822	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49370309	49370310	rs56104184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19q13.33	PLEKHA4	rs56104184-T	0.1877	4E-13		0.03336426	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49370309	49370310	rs56104184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19q13.33	PLEKHA4	rs56104184-T	0.1877	7E-11		0.03001923	[0.021-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49370309	49370310	rs56104184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19q13.33	PLEKHA4	rs56104184-T	0.1876	4E-10		0.02866177	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49370309	49370310	rs56104184	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19q13.33	PLEKHA4	rs56104184-T	0.1876	5E-9		0.02688721	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49370501	49370504	rs3830423	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.33	PLEKHA4	rs3830423-A	0.187694	2E-10		0.018008083	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49370501	49370501	rs758313404	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	19q13.33		rs758313404-?	NR	4E-6		0.08619032	[0.05-0.122] unit increase	Illumina [9939936] (imputed)	N
961	chr19	49370608	49370609	rs4801778	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	19q13.33		rs4801778-T	0.1798	1E-8		0.9460149	[0.9281405415749607-0.9642334091548289]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
961	chr19	49370608	49370609	rs4801778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.33	PLEKHA4	rs4801778-T	0.188361	2E-36		0.03604413	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49370608	49370609	rs4801778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.33	PLEKHA4	rs4801778-T	0.188371	8E-31		0.03306243	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49374687	49374688	rs62127977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs62127977-A	0.034859	6E-10		0.0353222	[0.024-0.046] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49374687	49374688	rs62127977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs62127977-A	0.034864	3E-14		0.04589291	[0.034-0.058] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49374687	49374688	rs62127977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs62127977-A	0.0349	5E-19		0.05457092	[0.043-0.067] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49375524	49375525	rs17272694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0293369999999999	2E-34		0.0819029	[0.069-0.095] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49375524	49375525	rs17272694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0293330000000001	4E-29		0.07504832	[0.062-0.088] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49375524	49375525	rs17272694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.029321	5E-38		0.08571016	[0.073-0.099] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49375524	49375525	rs17272694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.029319	2E-34		0.08136579	[0.068-0.094] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49375524	49375525	rs17272694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0296	3E-15		0.08419195	[0.063-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49375524	49375525	rs17272694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0295	1E-12		0.07556399	[0.055-0.096] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49375524	49375525	rs17272694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0295	1E-14		0.08198066	[0.061-0.103] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49375524	49375525	rs17272694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	19q13.33	PLEKHA4, PPP1R15A	rs17272694-T	0.0295	6E-13		0.07663595	[0.056-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49377423	49377424	rs11541192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.33	PPP1R15A	rs11541192-A	0.186197	6E-35		0.035192855	[0.03-0.041] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49377423	49377424	rs11541192	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	19q13.33	NR	rs11541192-?	NR	5E-6		0.0742	[0.042-0.106] unit decrease	Illumina [at least 560000] (imputed)	N
961	chr19	49377435	49377436	rs556052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.33	PPP1R15A	rs556052-C	0.332574	8E-34		0.05728075	[0.048-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr19	49377435	49377436	rs556052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs556052-G	0.658478	2E-41				Affymetrix, Illumina [22063850] (imputed)	N
961	chr19	49377435	49377436	rs556052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.33	NR	rs556052-G	0.667997	1E-44		0.028183	[0.024-0.032] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
961	chr19	49377435	49377436	rs556052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.33		rs556052-?	NR	4E-38				NR [~ 8900000] (imputed)	N
961	chr19	49377435	49377436	rs556052	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.33	PPP1R15A	rs556052-C	0.333	9E-12		0.0283128	[0.02-0.037] unit decrease	Affymetrix [16832071] (imputed)	N
961	chr19	49378244	49378245	rs595982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.33		rs595982-C	NR	5E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
961	chr19	49378244	49378245	rs595982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.33	NR	rs595982-C	0.331597	7E-11		0.01266	[0.0089-0.0165] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
961	chr19	49378244	49378245	rs595982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs595982-C	0.334063	1E-13				Affymetrix, Illumina [20825802] (imputed)	N
961	chr19	49378244	49378245	rs595982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.33	NR	rs595982-C	0.331052	2E-15		0.016251	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
961	chr19	49378244	49378245	rs595982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.33		rs595982-?	NR	2E-15				NR [~ 8900000] (imputed)	N
961	chr19	49378244	49378245	rs595982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.33	PPP1R15A	rs595982-C	0.3292	5E-12		0.02597805	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
961	chr19	49378516	49378517	rs594597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.33	PPP1R15A	rs594597-G	0.275056	4E-12		0.03477479	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
961	chr19	49385153	49385154	rs4347731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs4347731-G	NR	1E-16		0.0305	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
962	chr19	49458261	49458262	rs4645881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.33	BAX	rs4645881-T	0.852201	7E-9		0.018414421	[0.012-0.025] unit increase	Affymetrix [93095623] (imputed)	N
962	chr19	49458261	49458262	rs4645881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.33	BAX	rs4645881-T	0.852304	3E-12		0.02174481	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
962	chr19	49458261	49458262	rs4645881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.33	BAX	rs4645881-T	0.85231	3E-17		0.026334522	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
962	chr19	49458261	49458262	rs4645881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs4645881-T	0.848163	1E-17				Affymetrix, Illumina [19872809] (imputed)	N
962	chr19	49458261	49458262	rs4645881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	19q13.33	NR	rs4645881-T	0.85222	7E-19		0.025032	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
962	chr19	49458261	49458262	rs4645881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	19q13.33	BAX	rs4645881-T	0.8535	1E-11		0.03446205	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
962	chr19	49458261	49458262	rs4645881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.33	BAX	rs4645881-T	0.8535	3E-9		0.03019831	[0.02-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
962	chr19	49458261	49458262	rs4645881	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	19q13.33	BAX	rs4645881-T	0.8535	1E-10		0.03286422	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
962	chr19	49459103	49459104	rs1805419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.33	BAX	rs1805419-G	0.715627	6E-9		0.014360777	[0.0095-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
962	chr19	49459103	49459104	rs1805419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.33		rs1805419-?	NR	5E-17				NR [~ 8900000] (imputed)	N
962	chr19	49460914	49460915	rs1010104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.33		rs1010104-A	NR	8E-14		0.0197	[0.015-0.025] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
962	chr19	49461210	49461211	rs1010103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.33	BAX	rs1010103-G	0.873059	8E-12		0.022572057	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
962	chr19	49465492	49465493	rs4645904	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	19q13.33	BAX	rs4645904-?		8E-6	(AA)	0.174	[0.084-0.264] unit increase	Affymetrix, Illumina [NR] (imputed)	N
962	chr19	49465725	49465726	rs79366920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19q13.33		rs79366920-G	0.10747	1E-8		0.0317319	[0.021-0.043] unit decrease	Illumina [13478928] (imputed)	N
962	chr19	49487651	49487651	rs573396813	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19q13.33	NR	rs573396813-CT	0.5579419999999999	3E-8		0.0177663	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
962	chr19	49497154	49497155	rs3764618	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Follicle stimulating hormone levels	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	19q13.33	NR	rs3764618-?	0.08	4E-8	(FSH)			Illumina [709211]	N
962	chr19	49500365	49500366	rs79502742	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	NR	rs79502742-G	0.88859375	9E-148	(CGA LHB, 2953_31_2)	0.7314155	[0.68-0.78] unit increase	Illumina [> 1000000] (imputed)	N
962	chr19	49500365	49500366	rs79502742	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	NR	rs79502742-G	0.88859375	6E-96	(LHB, 8376_25_4)	0.5935457	[0.54-0.65] unit increase	Illumina [> 1000000] (imputed)	N
962	chr19	49500365	49500366	rs79502742	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	NR	rs79502742-G	0.88859375	3E-242	(CGA CGB, 4914_10_1)	0.9031508	[0.85-0.95] unit decrease	Illumina [> 1000000] (imputed)	N
962	chr19	49515170	49515171	rs78248023	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LHB	5,368 Icelandic ancestry individuals	NA	19q13.33		rs78248023-A	0.1208	1E-174		0.58122	[0.54-0.62] unit decrease	Illumina [7506463] (imputed)	N
962	chr19	49515170	49515171	rs78248023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	19q13.33	NR	rs78248023-A	0.07789199999999996	2E-16		0.0192124	[0.014-0.024] unit increase	Affymetrix [16578495] (imputed)	N
962	chr19	49517139	49517140	rs75287599	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	19q13.33	NR	rs75287599-T	0.07732399999999995	2E-17		0.0432724	[0.033-0.054] unit increase	Affymetrix [16580851] (imputed)	N
962	chr19	49517139	49517140	rs75287599	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	LHB	rs75287599-T	0.078	2E-21	(Lutropin subunit beta, LHB.8376.25.4)	0.43	[0.33-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
962	chr19	49517145	49517146	rs139643250	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	LHB	rs139643250-T	0.076	3E-50	(Luteinizing hormone, CGA.LHB.2953.31.2)	0.68	[0.58-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
962	chr19	49517292	49517293	rs7256062	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	19q13.33	NR	rs7256062-C	0.5680959999999999	2E-10		0.0127754	[0.0088-0.0167] unit increase	Affymetrix [16583148] (imputed)	N
962	chr19	49517330	49517331	rs79785970	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	CGB	rs79785970-G	0.077	1E-148	(Human Chorionic Gonadotropin, CGA.CGB.4914.10.1)	1.11	[1.03-1.19] unit increase	Affymetrix [10572788] (imputed)	N
962	chr19	49518483	49518484	rs753307	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.33	RUVBL2, CTB-60B18.10, CGB, MIR6798, LHB, NTF6A, CTB-60B18.6	rs753307-C	0.4824297	9E-15	(EA, Human Chorionic Gonadotropin)	0.256	[0.19-0.32] unit increase	Affymetrix [509946]	N
962	chr19	49519872	49519873	rs6521	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	19q13.33	NR	rs6521-C	0.5672189999999999	1E-10		0.0193524	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
962	chr19	49520826	49520827	rs3795046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	NR	rs3795046-T	0.045	2E-94	(Human Chorionic Gonadotropin, CGA.CGB.4914.10.1)	1.31	[1.19-1.43] unit increase	Affymetrix [10572788] (imputed)	N
962	chr19	49520827	49520828	rs3795047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	NR	rs3795047-T	0.049	7E-43	(Luteinizing hormone, CGA.LHB.2953.31.2)	0.87	[0.75-0.99] unit decrease	Affymetrix [10572788] (imputed)	N
962	chr19	49520827	49520828	rs3795047	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	NR	rs3795047-T	0.049	7E-100	(Human Chorionic Gonadotropin, CGA.CGB.4914.10.1)	1.29	[1.17-1.41] unit increase	Affymetrix [10572788] (imputed)	N
962	chr19	49534957	49534958	rs7251022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	19q13.33	NR	rs7251022-A	NR	1E-9		0.0304	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
963	chr19	49550115	49550116	rs143041401	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	19q13.33	CGB8	rs143041401-A	0.0161	4E-14		0.11	[0.078-0.13] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
963	chr19	49558446	49558447	rs33949355	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.33	CGB7	rs33949355-G	0.467869	3E-9		0.0110748	[0.0074-0.0147] unit decrease	NR [13737936] (imputed)	N
963	chr19	49576801	49576802	rs117276938	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	19q13.33	Intergenic	rs117276938-C	0.975	1E-6		0.182	NR unit decrease	Illumina [NR] (imputed)	N
963	chr19	49579709	49579710	rs12983109	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	19q13.33		rs12983109-G	NR	6E-6		0.00580825	[0.0033-0.0083] years increase	NR [7400000] (imputed)	N
963	chr19	49579709	49579710	rs12983109	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	19q13.33		rs12983109-G	NR	4E-8		0.020388307	[0.013-0.028] years increase	NR [7400000] (imputed)	N
963	chr19	49580038	49580039	rs35828463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.33	KCNA7, SNRNP70	rs35828463-T	0.903387	7E-17	(78 ms)	0.0773901	[0.059-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
963	chr19	49580038	49580039	rs35828463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.33	KCNA7, SNRNP70	rs35828463-T	0.903387	3E-8	(230 ms)	0.0510437	[0.032-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
963	chr19	49580038	49580039	rs35828463	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.33	KCNA7, SNRNP70	rs35828463-T	0.903387	1E-20	(102 ms)	0.085303	[0.067-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
963	chr19	49605704	49605705	rs73046792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	19q13.33		rs73046792-A	NR	2E-15		0.0241	[0.018-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
963	chr19	49605704	49605705	rs73046792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	19q13.33		rs73046792-A	NR	2E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
963	chr19	49605704	49605705	rs73046792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	19q13.33		rs73046792-A	NR	3E-12		0.0214	[0.015-0.027] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
963	chr19	49605704	49605705	rs73046792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	19q13.33		rs73046792-A	NR	8E-9		0.0184	[0.012-0.025] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
963	chr19	49605704	49605705	rs73046792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.33		rs73046792-?	NR	1E-17				NR [~ 8900000] (imputed)	N
963	chr19	49605704	49605705	rs73046792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs73046792-?	NR	3E-9				NR [~ 8900000] (imputed)	N
963	chr19	49605704	49605705	rs73046792	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	19q13.33	SNRNP70	rs73046792-G	0.8412	7E-17		0.3554	[0.27-0.44] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
963	chr19	49611318	49611319	rs1058882	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	19q13.33	NR	rs1058882-T	NR	7E-6	(AA)	0.191689	[0.11-0.28] unit decrease	Affymetrix [up to 6007810] (imputed)	N
963	chr19	49646005	49646006	rs4545921	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.33	PPFIA3	rs4545921-A	0.399961	4E-8		0.00769113	[0.0049-0.0104] unit increase	Affymetrix [12370749]	N
963	chr19	49646005	49646006	rs4545921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.33		rs4545921-?	NR	1E-10				NR [~ 8900000] (imputed)	N
963	chr19	49646475	49646476	rs4802570	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.33	NR	rs4802570-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
963	chr19	49646475	49646476	rs4802570	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.33	NA	rs4802570-C	0.3968	3E-9		0.0116	[0.0077-0.0155] unit increase	NR [~ 27400000] (imputed)	N
963	chr19	49650318	49650319	rs6509418	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	19q13.33	PPFIA3	rs6509418-?	NR	9E-6		5.7	[2.5-13]	Illumina [1057565]	N
963	chr19	49652128	49652129	rs112505587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	19q13.33		rs112505587-G	NR	2E-9		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
965	chr19	49814831	49814832	rs3760667	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19q13.33	SLC6A16	rs3760667-T	NR	2E-9		0.87	[0.82-0.92]	Illumina [NR] (imputed)	N
965	chr19	49814831	49814832	rs3760667	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	19q13.33	SLC6A16	rs3760667-T	NR	1E-6		0.863	[0.8-0.92]	Illumina [5719137] (imputed)	N
965	chr19	49837245	49837246	rs1465697	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19q13.33	SLC6A16	rs1465697-T	NR	3E-18		1.0973334	NR	Affymetrix, Illumina [8278136] (imputed)	N
965	chr19	49845894	49845895	rs8108669	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19q13.33	NR	rs8108669-T	0.299	5E-12		0.893	[0.86-0.92]	Illumina [11270530] (imputed)	N
965	chr19	49846397	49846398	rs30003	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs30003-C	0.23011	2E-20		0.2717	[0.21-0.33] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49846397	49846398	rs30003	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs30003-C	0.23004	3E-11		0.1948	[0.14-0.25] unit decrease	Illumina [18234152] (imputed)	N
965	chr19	49847915	49847916	rs30006	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD27- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs30006-C	0.23352	9E-11		0.1907	[0.13-0.25] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49847915	49847916	rs30006	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs30006-C	0.23352	3E-11		0.196	[0.14-0.25] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49853880	49853881	rs6509428	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs6509428-T	0.23224	2E-16		0.2404	[0.18-0.3] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49869050	49869051	rs2303759	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	19q13.33	DKKL1	rs2303759-C	NR	5E-9		1.11	[1.09-1.13]	Illumina [465434]	N
965	chr19	49870642	49870643	rs8107548	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19q13.33	DKKL1	rs8107548-G	0.26	6E-15		1.11		Illumina [161311]	N
965	chr19	49872520	49872521	rs55809481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs55809481-C	0.24224	9E-29		0.3215	[0.27-0.38] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49872520	49872521	rs55809481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs55809481-C	0.24224	9E-29		0.3192	[0.26-0.37] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49872520	49872521	rs55809481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs55809481-C	0.24224	5E-17		0.2424	[0.19-0.3] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49872520	49872521	rs55809481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs55809481-C	0.24224	2E-13		0.2125	[0.16-0.27] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49872520	49872521	rs55809481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs55809481-C	0.24224	8E-23		0.283	[0.23-0.34] unit decrease	Illumina [18238311] (imputed)	N
965	chr19	49907689	49907690	rs10426452	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on CD20- CD38- B cell	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs10426452-A	0.38164	3E-8		0.1391	[0.09-0.188] unit decrease	Illumina [18220019] (imputed)	N
965	chr19	49909579	49909580	rs76060370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs76060370-T	NR	4E-13		0.0402	[0.029-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
965	chr19	49915910	49915911	rs34486765	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.33		rs34486765-A	0.30928	2E-10		0.1684	[0.12-0.22] unit increase	Illumina [18238311] (imputed)	N
965	chr19	49918547	49918548	rs117137947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs117137947-?	NR	6E-9				NR [~ 8900000] (imputed)	N
965	chr19	49931637	49931638	rs183667936	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	19q13.33	CTD-3148I10.1	rs183667936-T	NR	2E-6		0.6585463	[0.39-0.93] unit increase	Affymetrix [9576485] (imputed)	N
966	chr19	49965687	49965688	rs117605916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs117605916-A	NR	1E-13		0.0497	[0.037-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	49965687	49965688	rs117605916	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs117605916-A	NR	3E-12		0.0471	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	49968071	49968072	rs2293010	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	19q13.33	NR	rs2293010-?	NR	1E-11	(conditional on round 3)	0.07759538	[0.055-0.1] unit increase novel	Illumina [6108953] (imputed)	N
966	chr19	49969005	49969006	rs150414818	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	19q13.33		rs150414818-?	NR	9E-78		0.613134	[0.55-0.68] unit increase	NR [9800000] (imputed)	N
966	chr19	49969005	49969006	rs150414818	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	19q13.33		rs150414818-?	NR	3E-10		0.2021	[0.13-0.27] unit increase	NR [9800000] (imputed)	N
966	chr19	49979397	49979398	rs17272847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs17272847-A	NR	1E-24		0.0459	[0.037-0.055] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	49979397	49979398	rs17272847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs17272847-A	NR	3E-9		0.0267	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	49979397	49979398	rs17272847	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs17272847-A	NR	3E-13		0.0327	[0.024-0.042] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	49979397	49979398	rs17272847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.33	FLT3LG	rs17272847-A	0.0860570000000001	9E-15		0.030583745	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	49979397	49979398	rs17272847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs17272847-A	0.0835107	1E-20				Affymetrix, Illumina [23467995] (imputed)	N
966	chr19	49979397	49979398	rs17272847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.33	NR	rs17272847-A	0.085976	1E-23		0.034971	[0.028-0.042] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
966	chr19	49979788	49979789	rs79058858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	19q13.33		rs79058858-T	NR	1E-9		0.1507	[0.1-0.2] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
966	chr19	49979788	49979789	rs79058858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	19q13.33		rs79058858-T	0.005373	1E-9		0.15072	[0.1-0.2] unit increase	Illumina [13476266] (imputed)	N
966	chr19	49979788	49979789	rs79058858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	19q13.33		rs79058858-T	0.005398	9E-9		0.142903	[0.094-0.192] unit increase	Illumina [13476299] (imputed)	N
966	chr19	49979788	49979789	rs79058858	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	19q13.33	FLT3LG	rs79058858-T	0.0052	1E-8		0.16	NR unit increase	Illumina [9591901] (imputed)	N
966	chr19	49992217	49992217	rs199970514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.33		rs199970514-CA	NR	6E-14		0.0309	[0.023-0.039] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
966	chr19	49992217	49992217	rs199970514	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.33	RPL13A	rs199970514-CA	0.086384	6E-18		0.034087032	[0.026-0.042] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	49998848	49998849	rs34750569	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.33	RPS11	rs34750569-?		2E-8		0.0283	[0.018-0.038] unit decrease	Illumina [31500000] (imputed)	N
966	chr19	49998848	49998849	rs34750569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	19q13.33	NR	rs34750569-G	0.841553	2E-10		0.031745	[0.022-0.042] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	1E-10		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	3E-83		0.0662	[0.06-0.073] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	5E-79		0.0645	[0.058-0.071] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	4E-17		0.0288	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	1E-15		0.0274	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	3E-9		0.0195	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.33	NR	rs2280401-A	NR	7E-10		0.0202	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.33	RPS11	rs2280401-?		4E-10		0.0297	[0.02-0.039] unit increase	Illumina [31500000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	19q13.33	RPS11	rs2280401-?	NR	1E-62		0.09654	[0.085-0.108] unit increase novel	Illumina [6108953] (imputed)	N
966	chr19	50000008	50000009	rs2280401	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	19q13.33	RPS11	rs2280401-?	NR	4E-16		0.05042	[0.038-0.063] unit increase novel	Illumina [6108953] (imputed)	N
966	chr19	50000008	50000009	rs2280401	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	19q13.33	FCGRT, RPS11	rs2280401-A	0.16	7E-8	(Japanese)	0.05	[0.032-0.068] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	19q13.33	FCGRT, RPS11	rs2280401-A	0.16	3E-6		0.021	[0.012-0.030] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	19q13.33	FCGRT, RPS11	rs2280401-A	0.17	8E-7	(EA)	0.0121	[0.0074-0.0168] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	19q13.33	FCGRT, RPS11	rs2280401-A	0.17	6E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	19q13.33	RPS11	rs2280401-A	0.17	9E-13	(ALB)	0.0293	[0.021-0.037] g/dL increase	Affymetrix [~ 2200000] (imputed)	N
966	chr19	50000008	50000009	rs2280401	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	19q13.33	FCGRT, RPL13A, RPS11, RCN3	rs2280401-A	0.16	3E-8	(TP)	0.107	[0.07-0.144] unit increase	Illumina [561583]	N
966	chr19	50003376	50003377	rs57035065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs57035065-A	NR	6E-24		0.0634	[0.051-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50003376	50003377	rs57035065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs57035065-A	NR	2E-20		0.0582	[0.046-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50003376	50003377	rs57035065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.33	NR	rs57035065-A	NR	1E-9		0.0384	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50012573	50012574	rs34010237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	19q13.33		rs34010237-A	0.144642	1E-9		0.0286436	[0.019-0.038] unit decrease	Illumina [13479135] (imputed)	N
966	chr19	50012573	50012574	rs34010237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	19q13.33		rs34010237-A	0.145229273	3E-8		0.07713786	[0.05-0.104] unit decrease	Illumina [13429980] (imputed)	N
966	chr19	50012573	50012574	rs34010237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	19q13.33		rs34010237-A	0.144604	2E-8		0.0262941	[0.017-0.036] unit decrease	Illumina [13478961] (imputed)	N
966	chr19	50012573	50012574	rs34010237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.33	NR	rs34010237-A	NR	8E-10		0.02	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50012573	50012574	rs34010237	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	19q13.33	MIR150, FCGRT	rs34010237-?	NR	6E-10		0.03671	[0.025-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
966	chr19	50012573	50012574	rs34010237	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	19q13.33	MIR150, FCGRT	rs34010237-?	NR	2E-40		0.08944	[0.076-0.103] unit increase	Illumina [6108953] (imputed)	N
966	chr19	50012573	50012574	rs34010237	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	19q13.33	MIR150, FCGRT	rs34010237-?	NR	6E-10		0.03528	[0.024-0.046] unit increase novel	Illumina [6108953] (imputed)	N
966	chr19	50013044	50013045	rs2946863	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	19q13.33		rs2946863-?	NR	6E-6		1.08117	[1.05-1.11]	NR [685523]	N
966	chr19	50014976	50014977	rs2335534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.33	FCGRT	rs2335534-A	0.180579	3E-9		0.017425958	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50016478	50016479	rs111981233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.33	FCGRT	rs111981233-G	0.079357	4E-10		0.02578894	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50016478	50016479	rs111981233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.33	NR	rs111981233-G	0.07955999999999996	2E-46		0.0214079	[0.018-0.024] unit increase	Affymetrix [16582909] (imputed)	N
966	chr19	50016478	50016479	rs111981233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.33	NR	rs111981233-G	0.07898400000000005	8E-36		0.0251937	[0.021-0.029] unit increase	Affymetrix [16582621] (imputed)	N
966	chr19	50016478	50016479	rs111981233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.33	NR	rs111981233-G	0.07955999999999996	2E-37		0.0209851	[0.018-0.024] unit increase	Affymetrix [16582965] (imputed)	N
966	chr19	50016478	50016479	rs111981233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.33	NR	rs111981233-G	0.07898400000000005	8E-33		0.0261638	[0.022-0.031] unit increase	Affymetrix [16582614] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	3E-10		0.045472	[0.031-0.06] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	1E-8		0.0413211	[0.027-0.055] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	9E-10		0.0443009	[0.03-0.058] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	6E-9		0.0417535	[0.028-0.056] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	2E-8		0.0404845	[0.026-0.055] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	2E-8		0.0402312	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	3E-8		0.0400483	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916939	2E-10		0.0468988	[0.032-0.061] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916939	5E-10		0.0449922	[0.031-0.059] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916939	2E-9		0.0439839	[0.03-0.058] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916939	3E-11		0.0488269	[0.034-0.063] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916939	6E-9		0.0425052	[0.028-0.057] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	2E-31		0.0860381	[0.072-0.101] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs59774409-C	0.916937	5E-8		0.0393146	[0.025-0.053] unit decrease	NR [11722792] (imputed)	N
966	chr19	50016747	50016748	rs59774409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.33	NR	rs59774409-T	0.08218599999999998	5E-16		0.0179876	[0.014-0.022] unit increase	Affymetrix [16585854] (imputed)	N
966	chr19	50016747	50016748	rs59774409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.33	NR	rs59774409-T	0.08218599999999998	2E-10		0.0160693	[0.011-0.021] unit increase	Affymetrix [16585866] (imputed)	N
966	chr19	50016747	50016748	rs59774409	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs59774409-C	NR	2E-9		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
966	chr19	50016747	50016748	rs59774409	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.33	NR	rs59774409-C	0.904	8E-9	(EA)	0.043	unit decrease	Affymetrix [at least 7091467] (imputed)	N
966	chr19	50016758	50016759	rs142385484	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	19q13.33		rs142385484-C	0.852581	3E-8		0.0318581	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
966	chr19	50016758	50016759	rs142385484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	19q13.33		rs142385484-T	0.145807	4E-11		0.0361076	[0.025-0.047] unit decrease	Illumina [13476599] (imputed)	N
966	chr19	50016758	50016759	rs142385484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	19q13.33		rs142385484-T	NR	4E-171		0.0847	[0.079-0.091] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
966	chr19	50016758	50016759	rs142385484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	19q13.33		rs142385484-T	0.147014	1E-56		0.090808	[0.08-0.102] unit increase	Illumina [13474682] (imputed)	N
966	chr19	50016758	50016759	rs142385484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	19q13.33		rs142385484-T	NR	3E-19		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
966	chr19	50016758	50016759	rs142385484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	19q13.33		rs142385484-T	0.146233	7E-14		0.0397587	[0.029-0.05] unit increase	Illumina [13478956] (imputed)	N
966	chr19	50016758	50016759	rs142385484	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	19q13.33	NR	rs142385484-C	0.8518	2E-8		0.0336	[0.022-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
966	chr19	50016758	50016759	rs142385484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.33	FCGRT	rs142385484-C	0.852114	3E-16		0.0232242	[0.018-0.029] unit increase	Affymetrix [NR] (imputed)	N
966	chr19	50016758	50016759	rs142385484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.33	FCGRT	rs142385484-C	0.852093	3E-10		0.0185312	[0.013-0.024] unit increase	Affymetrix [NR] (imputed)	N
966	chr19	50016971	50016971	rs139316391	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	19q13.33	NR	rs139316391-GTCTCTCTCTC	0.07716	2E-20		0.0525254	[0.041-0.064] unit increase	Affymetrix [16577313] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q13.33		rs150420714-C	NR	6E-37		0.1681	[0.14-0.19] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum total protein level	400,482 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	2E-152		0.313116	[0.29-0.34] unit decrease	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	5E-15		0.0779493	[0.057-0.099] unit increase	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	6E-176		0.341064	[0.32-0.36] unit decrease	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	9E-16		0.0831163	[0.062-0.104] unit increase	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	4E-13		0.0800999	[0.058-0.102] unit increase	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	19q13.33		rs150420714-?	NR	2E-53		0.183505	[0.16-0.21] unit decrease	NR [9800000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs150420714-C	NR	9E-113		0.3042	[0.28-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs150420714-C	NR	6E-119		0.3125	[0.29-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs150420714-C	NR	2E-18		0.118	[0.092-0.144] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.33	NR	rs150420714-C	NR	2E-38		0.175	[0.15-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.33	NR	rs150420714-C	NR	6E-12		0.0888	[0.064-0.114] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50017537	50017538	rs150420714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.33	FCGRT	rs150420714-C	0.00876299999999997	6E-13		0.08524538	[0.062-0.108] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50017537	50017538	rs150420714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.33	FCGRT	rs150420714-C	0.00876500000000002	5E-14		0.0893183	[0.066-0.113] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50017537	50017538	rs150420714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.33	FCGRT	rs150420714-C	0.00876200000000005	1E-15		0.09486526	[0.072-0.118] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50022938	50022939	rs73056079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs73056079-C	NR	1E-61		0.0664	[0.059-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50022938	50022939	rs73056079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs73056079-C	NR	8E-58		0.0643	[0.056-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50022938	50022939	rs73056079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs73056079-C	NR	2E-12		0.0283	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50022938	50022939	rs73056079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.33	NR	rs73056079-C	NR	2E-19		0.0362	[0.028-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr19	50025207	50025208	rs117080418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.33	NR	rs117080418-A	NR	8E-10		0.0755	[0.051-0.1] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50026265	50026266	rs62128087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	19q13.33		rs62128087-T	0.13796	1E-86		0.117979	[0.11-0.13] unit increase	Illumina [13477433] (imputed)	N
966	chr19	50027634	50027635	rs76375876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs76375876-T	NR	6E-11		0.0383	[0.027-0.05] unit increase	Affymetrix [9000000] (imputed)	N
966	chr19	50027871	50027872	rs147601685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	19q13.33		rs147601685-A	0.004827	3E-8		0.203952	[0.13-0.28] unit decrease	Illumina [13468899] (imputed)	N
966	chr19	50035160	50035161	rs147804508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.33	RCN3	rs147804508-T	0.010576	1E-10		0.07335861	[0.051-0.096] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50035160	50035161	rs147804508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.33	RCN3	rs147804508-T	0.010572	4E-13		0.08232774	[0.06-0.105] unit increase	Affymetrix [93095623] (imputed)	N
966	chr19	50036633	50036634	rs79476680	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.33	RCN3	rs79476680-T	0.089356	2E-11		0.02618801	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
966	chr19	50036633	50036634	rs79476680	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	19q13.33	NR	rs79476680-T	0.091014	3E-10		0.020315	[0.014-0.027] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
966	chr19	50038016	50038017	rs10419198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.33		rs10419198-T	NR	1E-149		0.0637	[0.059-0.068] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
966	chr19	50038016	50038017	rs10419198	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.33	RCN3	rs10419198-C	0.747261	5E-14		0.0169955	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
966	chr19	50038016	50038017	rs10419198	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	19q13.33	NR	rs10419198-?	NR	5E-18		0.04644	[0.036-0.057] unit decrease novel	Illumina [6108953] (imputed)	N
966	chr19	50042867	50042867	rs36013629	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	19q13.33		rs36013629-T	0.747476	2E-34		0.0579658	[0.049-0.067] unit increase	NR [11722792] (imputed)	N
966	chr19	50042867	50042867	rs36013629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19q13.33		rs36013629-TG	0.200515	4E-9		0.0150924	[0.01-0.02] unit increase	Illumina [13479295] (imputed)	N
966	chr19	50042867	50042867	rs36013629	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.33	RCN3	rs36013629-?	NR	4E-10		0.022689871	[0.016-0.03] unit increase	Illumina [27896057] (imputed)	N
966	chr19	50044740	50044741	rs113886122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.33		rs113886122-C	0.841321	3E-11		0.037752	[0.027-0.049] unit decrease	NR [11722792] (imputed)	N
966	chr19	50044740	50044741	rs113886122	34753797	Riveros-Mckay F	2021-11-09	Diabetes	An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript.	Fructosamine levels	20,731 European ancestry individuals	NA	19q13.33	RCN3	rs113886122-C	0.17	5E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix [19100024] (imputed)	N
966	chr19	50044740	50044741	rs113886122	34753797	Riveros-Mckay F	2021-11-09	Diabetes	An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript.	Fructosamine levels	20,731 European ancestry individuals	7,647 European ancestry individuals	19q13.33	RCN3	rs113886122-C	0.17	6E-11		0.0134	[0.01-0.017] unit increase	Affymetrix [19100024] (imputed)	N
966	chr19	50045915	50045916	rs34459162	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Total glycated albumin levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	19q13.33	RCN3	rs34459162-C	0.08	4E-8	(EA)	0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
966	chr19	50045915	50045916	rs34459162	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Fructosamine levels	7,647 European ancestry individuals, 2,104 Black individuals	1,304 European ancestry individuals, 608 Black individuals	19q13.33	RCN3	rs34459162-C	0.08	5E-9	(EA)	0.02	[0.014-0.026] unit decrease	Affymetrix [NR] (imputed)	N
966	chr19	50051561	50051561	rs111476047	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	19q13.33	RCN3	rs111476047-TTTGG	0.202	1E-11		0.03087733	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
966	chr19	50053451	50053452	rs35279796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	19q13.33		rs35279796-A	0.140634	2E-8		0.0279353	[0.018-0.038] unit decrease	Illumina [13478948] (imputed)	N
966	chr19	50067138	50067139	rs765855612	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	19q13.33	NOSIP	rs765855612-A	0.9988	3E-6		1.6266	[0.94-2.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
966	chr19	50067138	50067139	rs765855612	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	19q13.33	NOSIP	rs765855612-A	0.9988	2E-6		1.6831	[0.99-2.38] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
966	chr19	50067507	50067508	rs10412446	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	19q13.33	NR	rs10412446-G	0.235853	1E-27		0.024308	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
967	chr19	50072066	50072067	rs5023763	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	19q13.33		rs5023763-G	0.759214	3E-8		0.0251498	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
967	chr19	50078275	50078276	rs2379087	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	19q13.33		rs2379087-C	0.22	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
967	chr19	50078275	50078276	rs2379087	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	19q13.33	NR	rs2379087-C	0.2253	1E-10				NR [9056863] (imputed)	N
967	chr19	50084595	50084596	rs3760708	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	19q13.33	NR	rs3760708-C	0.235164	3E-32		0.026256	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
967	chr19	50086625	50086626	rs3745473	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	19q13.33	PRPG2	rs3745473-T	0.825349	1E-8		1.0330671	NR	Affymetrix [~ 9600000] (imputed)	N
967	chr19	50086625	50086626	rs3745473	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	19q13.33	PRRG2	rs3745473-C		3E-13		0.021	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
967	chr19	50089909	50089910	rs8113357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	19q13.33		rs8113357-C	NR	3E-17		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
967	chr19	50090422	50090422	rs552708909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.33	NOSIP, PRRG2	rs552708909-CT	0.221555	4E-21		0.025328659	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
967	chr19	50090422	50090422	rs552708909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.33	NOSIP, PRRG2	rs552708909-CT	0.221568	1E-18		0.02371803	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
967	chr19	50090422	50090422	rs552708909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	19q13.33	PRRG2, NOSIP	rs552708909-CT	0.2218	1E-10		0.02767996	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr19	50090606	50090607	rs10426059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.33		rs10426059-G	NR	5E-16		0.0131	[0.01-0.0162] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
967	chr19	50091198	50091199	rs56873913	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	19q13.33	NR	rs56873913-?	NR	4E-7				Illumina [up to 5582932] (imputed)	N
967	chr19	50091198	50091199	rs56873913	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19q13.33	PRRG2	rs56873913-T	NR	7E-7	(EA)	1.0679	[1.04-1.09]	Illumina [6627481] (imputed)	N
967	chr19	50091198	50091199	rs56873913	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	19q13.33	PRRG2	rs56873913-T	NR	2E-8		1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
967	chr19	50091198	50091199	rs56873913	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	19q13.33	intergenic	rs56873913-T	NR	4E-7		1.061	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
967	chr19	50091198	50091199	rs56873913	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19q13.33	NR	rs56873913-T	NR	3E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
967	chr19	50091198	50091199	rs56873913	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	19q13.33	NOSIP, PRR12, PRRG2, RCN3, RRAS, SCAF1	rs56873913-T	0.766	5E-8		1.071	[1.045-1.098]	Affymetrix, Illumina [9005918] (imputed)	N
967	chr19	50091203	50091204	rs112727702	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	19q13.33	PRRG2	rs112727702-T	0.232	2E-14		0.043	[0.032-0.054] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
967	chr19	50091221	50091222	rs111544199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	19q13.33	PRRG2, NOSIP	rs111544199-G	0.2304	8E-12		0.02880154	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
967	chr19	50093247	50093248	rs144521999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs144521999-T	NR	4E-10		0.0235	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
967	chr19	50093571	50093572	rs7249925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.33	PRRG2	rs7249925-G	0.228948	1E-22		0.025644854	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
967	chr19	50093571	50093572	rs7249925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs7249925-G	0.233666	9E-36				Affymetrix, Illumina [24332387] (imputed)	N
967	chr19	50093571	50093572	rs7249925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.33	NR	rs7249925-G	0.236562	2E-33		0.026988	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
967	chr19	50095960	50095961	rs11878568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs11878568-C	0.234858	3E-31				Affymetrix, Illumina [24653286] (imputed)	N
967	chr19	50095960	50095961	rs11878568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.33	NR	rs11878568-C	0.234887	8E-27				Affymetrix, Illumina [24558453] (imputed)	N
967	chr19	50099217	50099218	rs143035740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.33		rs143035740-?	NR	2E-8				NR [~ 8900000] (imputed)	N
967	chr19	50099421	50099422	rs73058052	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	19q13.33	PRR12	rs73058052-T	0.16	2E-8		0.0074	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
967	chr19	50100191	50100192	rs181265966	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	19q13.33	PRR12	rs181265966-A	0.44	2E-11		0.03589		Illumina [243345]	N
967	chr19	50100294	50100295	rs3745475	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.33		rs3745475-G	0.22	6E-12		6.89	z score increase	Affymetrix [9061022] (imputed)	N
967	chr19	50100294	50100295	rs3745475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	19q13.33		rs3745475-G	NR	5E-25		0.0219	[0.018-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
967	chr19	50103251	50103252	rs2116922	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.33		rs2116922-?	NR	7E-28				NR [~ 8900000] (imputed)	N
967	chr19	50109229	50109230	rs10409197	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs10409197-T	NR	3E-11		0.0381	[0.027-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
967	chr19	50121273	50121274	rs76246107	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.33	PRR12	rs76246107-G	0.919498	8E-9		0.0208129	[0.014-0.028] unit increase	Affymetrix [NR] (imputed)	N
967	chr19	50121273	50121274	rs76246107	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	19q13.33	PRR12	rs76246107-G	NR	3E-8		1.28	[1.14-1.43]	Illumina [6450125] (imputed)	N
967	chr19	50121273	50121274	rs76246107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.33		rs76246107-A	0.0941	7E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
967	chr19	50121273	50121274	rs76246107	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.33	Intergenic	rs76246107-A	0.0941	2E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
967	chr19	50135433	50135434	rs11880195	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q13.33	Intergenic	rs11880195-C	0.7492	7E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
967	chr19	50138022	50138023	rs6509441	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	19q13.33	NR	rs6509441-T	0.244533	4E-8		0.04010313	[0.026-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
967	chr19	50138022	50138023	rs6509441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.33	Intergenic	rs6509441-A	0.2508	1E-11	(MTAG)	0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
967	chr19	50138022	50138023	rs6509441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q13.33	Intergenic	rs6509441-A	0.2349	6E-10	(MTAG)	0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
967	chr19	50138022	50138023	rs6509441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	19q13.33	Intergenic	rs6509441-A	0.2349	3E-8		0.0188	[0.012-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
967	chr19	50138142	50138143	rs34647824	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	19q13.33	RRAS	rs34647824-A	0.7386	3E-11		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
967	chr19	50139931	50139932	rs61760904	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19q13.33	RRAS	rs61760904-T	0.008	8E-8		1.507	mmHg increase	Illumina [242296]	N
967	chr19	50139931	50139932	rs61760904	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	19q13.33	RRAS	rs61760904-T	0.0074	3E-7		1.0118	[0.62-1.4] mmHg increase	Illumina [242296]	N
967	chr19	50145899	50145900	rs189349094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	19q13.33		rs189349094-?	NR	1E-11				NR [~ 8900000] (imputed)	N
967	chr19	50145899	50145900	rs189349094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	19q13.33		rs189349094-?	NR	3E-11				NR [~ 8900000] (imputed)	N
967	chr19	50148051	50148052	rs12104272	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs12104272-?	NR	1E-8		1.0578094	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
967	chr19	50151685	50151686	rs7508601	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	19q13.33	SCAF1	rs7508601-T	0.609717	3E-8		1.0526316	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
967	chr19	50152141	50152142	rs7508148	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	19q13.33	ADM5, BCL2L12, CPT1C, IRF3, MIR5088, PRMT1, PRR12, PRRG2, RRAS, SCAF1	rs7508148-?	NR	4E-11		1.08	[1.06-1.1]	Illumina [8000000] (imputed)	N
967	chr19	50158702	50158703	rs139826768	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	19q13.33		rs139826768-A	0.985034	5E-13		0.123731	[0.09-0.157] unit increase	NR [11722792] (imputed)	N
967	chr19	50159755	50159756	rs149807892	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19q13.33		rs149807892-C	0.984177	3E-13		0.120812	[0.088-0.153] unit increase	NR [11722792] (imputed)	N
967	chr19	50161090	50161091	rs61743199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.33		rs61743199-?	NR	1E-8				NR [~ 8900000] (imputed)	N
967	chr19	50161090	50161091	rs61743199	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.33	SCAF1	rs61743199-A	0.933	2E-9		0.0343	[0.023-0.045] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
967	chr19	50161264	50161265	rs76387513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.33		rs76387513-?	NR	5E-8				NR [~ 8900000] (imputed)	N
967	chr19	50162908	50162909	rs7251	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	19q13.33	IRF3	rs7251-C	0.67	4E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
967	chr19	50165357	50165358	rs143769046	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	19q13.33		rs143769046-?	NR	1E-6		1.30448	[1.2-1.41]	NR [685523]	N
967	chr19	50168840	50168841	rs148729350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	19q13.33		rs148729350-T	NR	1E-8		0.7769	[0.51-1.04] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
967	chr19	50168870	50168871	rs2304206	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	19q13.33	SCAF1, IRF3, BCL2L12	rs2304206-G	0.7521	2E-9		1.1870846	[1.12-1.25]	Illumina [8966411] (imputed)	N
967	chr19	50172433	50172434	rs117005178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs117005178-A	NR	2E-14		0.0598	[0.045-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
967	chr19	50172433	50172434	rs117005178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs117005178-A	NR	2E-11		0.0522	[0.037-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
967	chr19	50176785	50176786	rs1045567	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.33	NR	rs1045567-?	NR	3E-6		4.703	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
967	chr19	50182696	50182697	rs8109314	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs8109314-?	NR	1E-13				NR [~ 8900000] (imputed)	N
967	chr19	50196991	50196992	rs12980063	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	19q13.33		rs12980063-G	NR	8E-10		0.0548	[0.037-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
967	chr19	50196991	50196992	rs12980063	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	19q13.33	CPT1C	rs12980063-G	0.391542	5E-11		0.06152123	[0.043-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr19	50196991	50196992	rs12980063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	19q13.33		rs12980063-?	NR	4E-8				NR [~ 8900000] (imputed)	N
967	chr19	50197405	50197406	rs12981033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	19q13.33		rs12981033-?	NR	2E-11				NR [~ 8900000] (imputed)	N
967	chr19	50199615	50199616	rs12984428	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	19q13.33		rs12984428-A	NR	1E-10		0.0659	[0.046-0.086] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
968	chr19	50208626	50208627	rs45617640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs45617640-T	NR	1E-24		0.0443	[0.036-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50208626	50208627	rs45617640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs45617640-T	NR	3E-17		0.0365	[0.028-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50213395	50213396	rs147472287	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		19q13.33	CPT1C	rs147472287-T	0.01	3E-8	(African)	0.05	[0.032-0.068] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
968	chr19	50217954	50217955	rs62128132	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	19q13.33	CPT1C	rs62128132-T	0.9669	2E-15		0.1146	[0.086-0.143] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
968	chr19	50217954	50217955	rs62128132	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19q13.33	CPT1C	rs62128132-T	0.9661	1E-15		0.117564	[0.089-0.146] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
968	chr19	50217954	50217955	rs62128132	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19q13.33	NR	rs62128132-T	0.0352	4E-9	(women)	0.1272	[0.085-0.17] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
968	chr19	50217954	50217955	rs62128132	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	19q13.33	NR	rs62128132-T	0.0335	1E-16	(men)	0.2095	[0.16-0.26] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
968	chr19	50223265	50223266	rs3810265	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	19q13.33	intergenic	rs3810265-?	0.07	4E-6				Affymetrix [253903]	N
968	chr19	50223368	50223369	rs8103298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs8103298-C	NR	2E-42		0.1106	[0.095-0.126] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50223368	50223369	rs8103298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs8103298-C	NR	7E-27		0.0871	[0.071-0.103] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50223368	50223369	rs8103298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs8103298-C	NR	4E-14		0.0615	[0.046-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50230326	50230327	rs8102150	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	19q13.33	CTB-33G10.1	rs8102150-?	0.028	7E-7	(S-DCT concentration, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
968	chr19	50243793	50243794	rs111814383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs111814383-G	NR	1E-11		0.0495	[0.035-0.064] unit increase	Affymetrix [9000000] (imputed)	N
968	chr19	50253426	50253427	rs77280277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.33	NR	rs77280277-A	NR	1E-11		0.0531	[0.038-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
968	chr19	50259673	50259674	rs10414501	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	19q13.33	TSKS	rs10414501-C	0.957	2E-12		0.125438	[0.091-0.16] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
968	chr19	50294149	50294150	rs7251251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.33		rs7251251-?	NR	1E-8				NR [~ 8900000] (imputed)	N
968	chr19	50299864	50299865	rs76403112	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.33	Intergenic	rs76403112-T	0.1536	5E-8	(MTAG)	0.0136	[0.0087-0.0185] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
969	chr19	50338235	50338236	rs2017698	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	19q13.33	MED25	rs2017698-?	NR	1E-7		0.492	[0.31-0.67] unit increase	Illumina [> 2500000] (imputed)	N
969	chr19	50410431	50410432	rs897388579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	19q13.33		rs897388579-A	NR	1E-8		2.5078	[1.64-3.37] unit increase	Affymetrix, Illumina [25845022] (imputed)	N
969	chr19	50431387	50431388	rs3826777	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	19q13.33		rs3826777-A	0.36	2E-8		0.07	unit increase	Illumina [2093892] (imputed)	N
969	chr19	50431387	50431388	rs3826777	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	19q13.33		rs3826777-A	0.36	2E-8		0.08	unit increase	Illumina [2398641] (imputed)	N
969	chr19	50451069	50451070	rs146633266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.33		rs146633266-T	NR	8E-9		0.0221	[0.015-0.03] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
969	chr19	50457550	50457551	rs12165127	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	19q13.33	SIGLEC11	rs12165127-T	0.057694791	5E-6		1.4677519	[1.245597518-1.729527897]	Illumina [10439017] (imputed)	N
970	chr19	50524331	50524332	rs3745495	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	19q13.33	VRK3	rs3745495-?		4E-7	(model 2)	1.39	[1.23-1.56]	Illumina [29610185] (imputed)	N
970	chr19	50540169	50540170	rs80285556	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	19q13.33	NR	rs80285556-A	NR	2E-6	(PM %)	0.4259	[NR] unit decrease	Illumina [1190033]	N
970	chr19	50568572	50568573	rs2017387	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	19q13.33	NR	rs2017387-A	NR	4E-6	(CPZe)	0.2115	[NR] unit decrease	Illumina [1190033]	N
971	chr19	50721073	50721074	rs4802666	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	19q13.33	MYH14	rs4802666-A	0.27	5E-6		0.13	[0.073-0.187] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
972	chr19	50778542	50778543	rs788338	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	19q13.33	MYH14	rs788338-?		2E-6	(SG)	0.17	[0.092-0.248] unit decrease	Illumina [693128]	N
972	chr19	50804065	50804066	rs1377817	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	19q13.33	NR	rs1377817-G	0.1299	5E-8		0.2303	[0.15-0.31] unit decrease	Illumina [7305641] (imputed)	N
972	chr19	50829798	50829800	rs145343344	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	19q13.33	NR	rs145343344-ACG		8E-6		0.0915	[0.051-0.132] SD units decrease	NR [10700000] (imputed)	N
972	chr19	50836683	50836684	rs10411345	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	19q13.33	NR	rs10411345-G		9E-6		0.097	[0.054-0.14] SD units increase	NR [10700000] (imputed)	N
973	chr19	50903204	50903205	rs181513970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	19q13.33		rs181513970-A	NR	5E-8		0.358	[0.23-0.49] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
973	chr19	50909764	50909765	rs2230245	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.33	POLD1	rs2230245-A	0.057	6E-6	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
973	chr19	50926741	50926742	rs3745516	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	19q13.33		rs3745516-A	NR	3E-30		0.274319	[0.23-0.32] unit increase	NR [5054572] (imputed)	N
973	chr19	50926741	50926742	rs3745516	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	19q13.33	SPIB, MYBPC2	rs3745516-A	0.24	1E-20		1.3888888	NR	Illumina [1143634] (imputed)	N
973	chr19	50926741	50926742	rs3745516	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	19q13.33	SPIB	rs3745516-A	0.23	2E-13		1.38	[1.32-1.44]	Illumina [507467]	N
973	chr19	50926741	50926742	rs3745516	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	19q13.33	SPIB	rs3745516-A	0.23	8E-11		1.46	[NR]	Illumina [276459]	N
973	chr19	50935808	50935809	rs138877676	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	19q13.33	SPIB	rs138877676-T	0.0192	2E-10		0.6556	[0.45-0.86] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
973	chr19	50957599	50957600	rs150466277	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Cognitive function	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	19q13.33	intergenic	rs150466277-C		1E-7		2.8	[NR] unit decrease	Illumina [NR] (imputed)	N
973	chr19	50985037	50985038	rs12609351	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	19q13.33	EMC10	rs12609351-T	0.2	5E-6		0.22	unit decrease	Illumina [5600000] (imputed)	N
974	chr19	51003387	51003391	rs576750965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	19q13.33		rs576750965-C	0.019966	4E-13		0.059927	[0.044-0.076] unit increase	Affymetrix [93095623] (imputed)	N
974	chr19	51003387	51003391	rs576750965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	19q13.33		rs576750965-C	0.019968	1E-11		0.056142528	[0.04-0.072] unit increase	Affymetrix [93095623] (imputed)	N
974	chr19	51003387	51003391	rs576750965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	19q13.33		rs576750965-C	0.019968	4E-13		0.060110576	[0.044-0.076] unit increase	Affymetrix [93095623] (imputed)	N
974	chr19	51004753	51004754	rs1298062	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	19q13.33	NR	rs1298062-?		7E-6				Illumina [1211988] (imputed)	N
974	chr19	51018844	51018845	rs112073242	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	19q13.33	intergenic	rs112073242-?	NR	8E-6		0.227	[0.086-0.368] unit decrease	Illumina [at least 13000000] (imputed)	N
974	chr19	51053475	51053476	rs191904180	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.33	LRRC4B	rs191904180-C	0.988338	5E-8	(436 ms)	0.150672	[0.097-0.205] unit increase	Affymetrix [10000000] (imputed)	N
975	chr19	51129744	51129745	rs117734003	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.33	NR	rs117734003-C	0.0673	9E-10		0.0139015	[0.0094-0.0184] unit increase	NR [9732723] (imputed)	N
975	chr19	51129744	51129745	rs117734003	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19q13.33	NR	rs117734003-C	0.0673	3E-9		0.030299067	[0.02-0.04] unit increase	NR [~ 10000000] (imputed)	N
975	chr19	51132745	51132746	rs61746970	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.33	SYT3	rs61746970-G	0.960851	4E-9		0.0213186	[0.014-0.028] unit decrease	Affymetrix [12370749]	N
975	chr19	51132745	51132746	rs61746970	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.33	NR	rs61746970-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
975	chr19	51132745	51132746	rs61746970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.33		rs61746970-?	NR	9E-10				NR [~ 8900000] (imputed)	N
975	chr19	51132745	51132746	rs61746970	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.33	NA	rs61746970-A	0.0386	1E-9		0.0308	[0.021-0.041] unit increase	NR [~ 27400000] (imputed)	N
975	chr19	51136843	51136844	rs8104662	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.33	SYT3	rs8104662-?		2E-6				Illumina [4322238] (imputed)	N
975	chr19	51140411	51140412	rs147914600	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.33	SYT3	rs147914600-T	0.0068	4E-7		0.2696	[0.17-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr19	51140411	51140412	rs147914600	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	19q13.33	SYT3	rs147914600-T	0.0068	4E-7		0.2696	[0.17-0.37] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr19	51161087	51161088	rs10404821	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	19q13.33	NR	rs10404821-?		9E-6		1.25	[1.07-1.46]	Affymetrix, Illumina [up to 9343778] (imputed)	N
975	chr19	51161087	51161088	rs10404821	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	19q13.33	NR	rs10404821-?		2E-6	(EA)	1.26	[1.08-1.48]	Affymetrix, Illumina [up to 9343778] (imputed)	N
975	chr19	51161087	51161088	rs10404821	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (nitrofurantoin)	64 European ancestry cases, 10,588 European ancestry controls	NA	19q13.33		rs10404821-?		2E-7		2.56	1.80-3.65	Illumina [505740] (imputed)	N
975	chr19	51162755	51162756	rs62112521	34018994	Xu JK	2021-03-22	Chin Med J (Engl)	Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer.	Breast cancer	1,496 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	4,138 Han Chinese ancestry cases, 5,051 Han Chinese ancestry controls	19q13.33	NR	rs62112521-?	NR	9E-6		0.92	[0.87-0.98]	Illumina [up to 800000]	N
975	chr19	51186080	51186081	rs12460584	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	19q13.33	SHANK1	rs12460584-?	NR	9E-6	(AUC)			NR [2092490]	N
975	chr19	51222293	51222294	rs540781594	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	CLEC11A	rs540781594-T	0.026	6E-49	(Stem Cell Growth Factor-beta, CLEC11A.2966.65.2)	1.16	[1-1.32] unit increase	Affymetrix [10572788] (imputed)	N
975	chr19	51223566	51223567	rs142930583	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC11A	5,363 Icelandic ancestry individuals	NA	19q13.33		rs142930583-C	0.02564	2E-31		0.691788	[0.58-0.81] unit increase	Illumina [7506463] (imputed)	N
975	chr19	51223566	51223567	rs142930583	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC11A	5,362 Icelandic ancestry individuals	NA	19q13.33		rs142930583-C	0.02564	9E-37		0.750856	[0.63-0.87] unit increase	Illumina [7506463] (imputed)	N
975	chr19	51228371	51228371	rs562569155	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	19q13.33		rs562569155-?	NR	9E-15		0.0908145	[0.068-0.114] unit decrease	NR [9800000] (imputed)	N
975	chr19	51228745	51228746	rs13866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	CLEC11A	rs13866-C	0.690625	4E-9	(CLEC11A, 2966_65_2)	0.15398307	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
975	chr19	51228745	51228746	rs13866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.33	CLEC11A	rs13866-C	0.690625	2E-7	(CLEC11A, 4500_50_2)	0.13840348	[0.086-0.19] unit increase	Illumina [> 1000000] (imputed)	N
975	chr19	51230732	51230733	rs116924815	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	19q13.33	CLEC11A	rs116924815-C		2E-16		0.6079	[0.46-0.75] SD units decrease	NR [10700000] (imputed)	N
975	chr19	51233757	51233758	rs62112533	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC11A	5,363 Icelandic ancestry individuals	NA	19q13.33		rs62112533-T	0.2857	1E-16		0.169336	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
975	chr19	51242566	51242567	rs182722517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.33		rs182722517-?	NR	6E-11				NR [~ 8900000] (imputed)	N
975	chr19	51242566	51242567	rs182722517	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.33	NR	rs182722517-A	0.007	2E-16	(Stem Cell Growth Factor-beta, CLEC11A.2966.65.2)	1.36	[1.05-1.67] unit decrease	Affymetrix [10572788] (imputed)	N
976	chr19	51259611	51259612	rs4539714	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	19q13.33	GPR32P1, GPR32, CLEC11A, ACPT, SHANK1, C19orf48, SNORD88B, SNORD88A, SNORD88C	rs4539714-C	0.194079	3E-6	(women)	0.348391	[0.2-0.49] % increase	Affymetrix [532676] (imputed)	N
976	chr19	51259611	51259612	rs4539714	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	19q13.33	GPR32P1, GPR32, CLEC11A, ACPT, SHANK1, C19orf48, SNORD88B, SNORD88A, SNORD88C	rs4539714-C	0.194079	2E-7	(women)	0.35984	[0.23-0.49] mm2 increase	Affymetrix [532676] (imputed)	N
976	chr19	51259611	51259612	rs4539714	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	19q13.33	GPR32P1, GPR32, CLEC11A, ACPT, SHANK1, C19orf48, SNORD88B, SNORD88A, SNORD88C	rs4539714-C	0.194079	5E-6	(women)	0.24412	[0.14-0.35] mm2 increase	Affymetrix [532676] (imputed)	N
976	chr19	51263295	51263296	rs4802739	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	19q13.33	GPR32	rs4802739-C	0.40	1E-6		0.2	[0.12-0.28] unit increase	Illumina [5918868] (imputed)	N
976	chr19	51283936	51283937	rs113101273	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	19q13.33	ACPT	rs113101273-A	0.0116755830586805	9E-6		0.011108	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
976	chr19	51297834	51297835	rs143398878	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ACP4	rs143398878-?	NR	1E-8	(female)	0.43088	[NR] unit increase	Affymetrix [NR] (imputed)	N
976	chr19	51343736	51343737	rs2659052	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	19q13.33		rs2659052-G	NR	3E-8		1.106	[1.067-1.146]	Affymetrix [7846216] (imputed)	N
976	chr19	51345567	51345568	rs2659051	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	19q13.33	AC011523.2	rs2659051-G	0.16	6E-9		0.72	[0.64-0.80] unit decrease	Illumina [185478]	N
976	chr19	51345567	51345568	rs2659051	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	19q13.33	NR	rs2659051-G	0.790271854	2E-8		1.1417319	[1.09-1.20]	Affymetrix, Illumina [20400945] (imputed)	N
976	chr19	51345567	51345568	rs2659051	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q13.33	NR	rs2659051-G	NR	3E-29		1.097	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
976	chr19	51345567	51345568	rs2659051	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	19q13.33	NR	rs2659051-G	0.621	3E-13		1.144	[1.10-1.19]	Affymetrix, Illumina [10186136] (imputed)	N
976	chr19	51345567	51345568	rs2659051	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	19q13.33	KLK15	rs2659051-G	NR	9E-7		0.115	[0.07-0.16] unit increase	Illumina [NR] (imputed)	N
976	chr19	51345567	51345568	rs2659051	25434496	Kim S	2014-11-27	Gene	Genetic variants at 1q32.1, 10q11.2 and 19q13.41 are associated with prostate-specific antigen for prostate cancer screening in two Korean population-based cohort studies.	Prostate-specific antigen levels	554 Korean ancestry individuals	1,575 Korean ancestry individuals	19q13.33	KLK3, KLK15	rs2659051-G	0.66	9E-21		0.2	[0.16-0.24] unit decrease	Affymetrix [2163106] (imputed)	N
976	chr19	51348571	51348572	rs4801855	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	19q13.33	POLD1, ACPT, KLK1, KLK4, SIGLEC9, CD33	rs4801855-?		3E-6		17.33	[10.55-24.11] unit decrease	Illumina [~ 4900000] (imputed)	N
976	chr19	51349089	51349090	rs266849	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		KLK3	rs266849-A	0.79	4E-17	(conditional on Round 4 SNPs)	0.057	unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51349089	51349090	rs266849	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals		NR	rs266849-A	0.83	6E-10				Illumina [304070]	N
976	chr19	51351235	51351235	rs201689919	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	19q13.33		rs201689919-CTTT	NR	7E-6		0.14638	[0.084-0.209] unit increase	Illumina [NR] (imputed)	N
976	chr19	51352936	51352937	rs266868	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		KLK3	rs266868-?	0.71	1E-14	(conditional on Round 3 SNPs)	0.046	unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51354396	51354397	rs11665748	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		KLK3	rs11665748-?	0.65	3E-54	(conditional on Round 1 SNPs)	0.09	unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51354596	51354597	rs2659124	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	19q13.33	KLK3	rs2659124-T	0.605	2E-8		1.156	NR	Illumina [7742602] (imputed)	N
976	chr19	51354596	51354597	rs2659124	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	19q13.33	KLK3	rs2659124-T	0.854	1E-13		1.18	[1.13-1.24]	Affymetrix [up to 19977088] (imputed)	N
976	chr19	51360769	51360770	rs112258520	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	19q13.33	NR	rs112258520-C		2E-6		0.4977	[0.31-0.69] SD units decrease	NR [10700000] (imputed)	N
976	chr19	51360817	51360818	rs266876	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	19q13.33	KLK3	rs266876-G	0.23	3E-8		0.76	[0.69-0.84] unit decrease	Illumina [185478]	N
976	chr19	51360839	51360840	rs62113212	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer aggressiveness	4,545 European ancestry cases	7,973 European ancestry cases	19q13.33	KLK3	rs62113212-T	0.061	6E-9		0.138	[0.091-0.185] unit increase	Illumina [1531807] (imputed)	N
976	chr19	51361381	51361382	rs61752561	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA		NR	rs61752561-G	NR	5E-12		1.152	[1.11-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
976	chr19	51361381	51361382	rs61752561	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		KLK3	rs61752561-?	0.97	2E-25	(conditional on Round 2 SNPs)	0.172	unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51361643	51361644	rs1810020	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	19q13.33		rs1810020-G	0.605514571	1E-11		1.1550198	[1.108116703-1.203908007]	Illumina [8919992] (imputed)	N
976	chr19	51361756	51361757	rs17632542	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	19q13.33		rs17632542-?	NR	3E-25		0.6723	[0.6-0.75]	NR [680312]	N
976	chr19	51361756	51361757	rs17632542	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	19q13.33	KLK3	rs17632542-T	0.92	2E-340		0.435333	[0.41-0.46] unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51361756	51361757	rs17632542	24753544	Knipe DW	2014-04-21	Cancer Epidemiol Biomarkers Prev	Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.	Prostate cancer	1,146 European ancestry cases, 1,804 European ancestry controls	1,854 European ancestry cases, 1,437 European ancestry controls	19q13.33	KLK3	rs17632542-T		2E-28		0.73	[0.60-0.86] unit increase	Illumina [514432] (imputed)	N
976	chr19	51361756	51361757	rs17632542	24740154	Lange EM	2014-04-16	PLoS One	Genome-wide association scan for variants associated with early-onset prostate cancer.	Prostate cancer (early onset)	931 European ancestry cases, 4,120 European ancestry controls	2,571 European ancestry cases, 921 European ancestry controls	19q13.33	KLK3	rs17632542-T	0.92	1E-7		1.85	[1.61-2.09]	Illumina [2639562] (imputed)	N
976	chr19	51361756	51361757	rs17632542	21160077	Gudmundsson J	2010-12-15	Sci Transl Med	Genetic correction of PSA values using sequence variants associated with PSA levels.	Serum prostate-specific antigen levels	7,538 European ancestry individuals	2,373 European ancestry individuals	19q13.33	KLK3	rs17632542-T	0.91	3E-46		39.1	[NR] % increase	Illumina [304070]	N
976	chr19	51362714	51362715	rs76765083	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	19q13.33	NR	rs76765083-T	0.926448239	2E-20		1.4557381	[1.34-1.58]	Affymetrix, Illumina [20400945] (imputed)	N
976	chr19	51362714	51362715	rs76765083	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	19q13.33	NR	rs76765083-T	NR	2E-62		1.304	[1.26-1.35]	Affymetrix, Illumina [29235255] (imputed)	N
976	chr19	51363397	51363398	rs1058205	24919509	Terao C	2014-06-11	J Med Genet	A genome-wide association study of serum levels of prostate-specific antigen in the Japanese population.	Prostate-specific antigen levels	1,086 Japanese ancestry males	1,302 Japanese ancestry males	19q13.33	KLK3	rs1058205-?	NR	8E-21		0.085	[0.067-0.103] unit increase	Illumina [303283]	N
976	chr19	51364268	51364269	rs2569735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	19q13.33		rs2569735-G	NR	1E-34		0.1837	[0.15-0.21] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
976	chr19	51364622	51364623	rs2735839	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	19q13.33	NR	rs2735839-G	NR	1E-21		1.25	NR	Affymetrix [at least 232408] (imputed)	N
976	chr19	51364622	51364623	rs2735839	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	19q13.33	KLK3, KLK2	rs2735839-G	0.6	3E-9		1.163	NR	Illumina [7742602] (imputed)	N
976	chr19	51364622	51364623	rs2735839	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	19q13.33	NR	rs2735839-G	0.85	3E-47		1.18	[1.15-1.21]	Illumina [20370935] (imputed)	N
976	chr19	51364622	51364623	rs2735839	28471803	Choe EK	2017-05-03	Eur J Cancer Prev	Search for genetic factor association with cancer-free prostate-specific antigen level elevation on the basis of a genome-wide association study in the Korean population.	Elevated serum prostate-specific antigen levels in healthy men	2,841 Korean ancestry individuals	1,283 Korean ancestry individuals	19q13.33	KLK3	rs2735839-A	NR	8E-20		0.1398	[NR] unit decrease	Affymetrix [584061]	N
976	chr19	51364622	51364623	rs2735839	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	19q13.33	NR	rs2735839-G	0.85	6E-9		1.17	[1.11-1.24]	Affymetrix [up to 19977088] (imputed)	N
976	chr19	51364622	51364623	rs2735839	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	19q13.33	NR	rs2735839-G	0.85	2E-8	(European)	1.2	[1.13-1.28]	Affymetrix [up to 19977088] (imputed)	N
976	chr19	51364622	51364623	rs2735839	23269536	Sun J	2012-12-27	Hum Genet	Genome-wide association study identified novel genetic variant on SLC45A3 gene associated with serum levels prostate-specific antigen (PSA) in a Chinese population.	Prostate-specific antigen levels	1,999 Chinese ancestry males	1,496 Chinese ancestry males	19q13.33	KLK3	rs2735839-G	0.58	6E-37		0.19	[NR] % increase	Illumina [> 709211] (imputed)	N
976	chr19	51364622	51364623	rs2735839	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	19q13.33	KLK3	rs2735839-G	0.85	2E-18		1.2	[1.10-1.33]	Illumina [541129]	N
976	chr19	51365439	51365440	rs111362352	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	19q13.33		rs111362352-C	NR	3E-36		1.4998	NR	Affymetrix [7846216] (imputed)	N
976	chr19	51365439	51365440	rs111362352	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	19q13.33		rs111362352-C	NR	5E-33		1.402	[1.327-1.482]	Affymetrix [7846216] (imputed)	N
976	chr19	51365465	51365466	rs2735837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	19q13.33		rs2735837-G	0.603999134	3E-11		0.14207874	[0.1-0.18] unit increase	Illumina [13406905] (imputed)	N
976	chr19	51369073	51369074	rs2739459	34012061	Sipeky C	2021-05-19	Prostate Cancer Prostatic Dis	Novel prostate cancer susceptibility gene SP6 predisposes patients to aggressive disease.	Prostate cancer	2,738 Finnish ancestry cases, 2,400 Finnish ancestry controls	NA	19q13.33	KLK2	rs2739459-G	0.48	2E-8		0.79	[0.73-0.86] unit decrease	Illumina [185478]	N
976	chr19	51373278	51373279	rs2739472	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	19q13.33	KLK2	rs2739472-?	0.56	8E-10	(conditional on Round 6 SNPs)	0.034	unit increase	Affymetrix [10109774] (imputed)	N
976	chr19	51374966	51374967	rs10424878	23555189	Chen Z	2013-04-01	Neoplasia	Genome-wide association study identifies genetic determinants of urine PCA3 levels in men.	PCA3 expression level	1,371 European ancestry individuals	NA	19q13.33	KLK3, KLK2	rs10424878-A	0.40	1E-8		1.24	[1.17-1.31] unit increase	Illumina [3076666] (imputed)	N
976	chr19	51377162	51377163	rs2664156	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	19q13.33	KLK15, KLK3, KLK2, KLKP1, KLK4	rs2664156-C		6E-6				Illumina [944512] (imputed)	N
976	chr19	51380109	51380110	rs6070	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)		KLK2	rs6070-?	0.65	4E-16	(conditional on Round5 SNPs	0.048	unit increase	Affymetrix [10109774] (imputed)	N
977	chr19	51383199	51383200	rs80050017	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Tandem gait	2,946 individuals	NA	19q13.33	KLK2	rs80050017-T	0.06	4E-7	(Sum sidestep distance)	5.213	[3.19-7.23] unit increase	Illumina [6200000] (imputed)	N
977	chr19	51393117	51393118	rs1354774	23359319	Jin G	2013-01-01	Neoplasia	Genome-wide association study identifies loci at ATF7IP and KLK2 associated with percentage of circulating free PSA.	Prostate-specific antigen levels	3,192 European ancestry individuals	1,722 European ancestry individuals	19q13.33	KLK2, KLKP1	rs1354774-G	0.343	6E-20		0.058	% increase	Illumina [642584]	N
977	chr19	51398426	51398427	rs116520962	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	19q13.33	intergenic	rs116520962-A	0.002	2E-6		15.23	[3.38-68.72]	Illumina [1556551]	N
977	chr19	51419545	51419546	rs1701930	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.41	KLK4	rs1701930-A	0.241	2E-6	(Urinary free epinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
977	chr19	51430595	51430596	rs7245858	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		19q13.41	LOC390956	rs7245858-?	0.04	2E-6		0.28	unit decrease	Illumina [NR] (imputed)	N
977	chr19	51445017	51445018	rs2659087	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	19q13.41	NR	rs2659087-T	0.5395	5E-7		0.6587	[0.4-0.91] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
977	chr19	51446326	51446327	rs2659090	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	19q13.41	NR	rs2659090-?		2E-6		0.54	[0.42-0.69]	Illumina [539473] (imputed)	N
977	chr19	51456014	51456015	rs11553092	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Kallikrein 5 plasma levels	400 French ancestry individuals	NA	19q13.41		rs11553092-G	NR	3E-16		0.243	[0.19-0.3] ng/mL increase	Illumina [5201092] (imputed)	N
977	chr19	51458192	51458193	rs74606695	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	19q13.41	CTB-147C22.8	rs74606695-T	0.0047	2E-6		0.4884	[0.29-0.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
977	chr19	51471082	51471083	rs79324425	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs79324425-C	0.067	2E-15	(Kallikrein-7, KLK7.3378.49.2)	0.4	[0.3-0.5] unit increase	Affymetrix [10572788] (imputed)	N
977	chr19	51471982	51471983	rs268891	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kallikrein-6 levels	21,758 European ancestry individuals	9,173 individuals	19q13.41		rs268891-A	0.35	3E-99		0.1932	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
977	chr19	51474240	51474241	rs11667946	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19q13.41	KLK6	rs11667946-C	0.53	3E-18		0.3	unit increase	Illumina [5270624] (imputed)	N
977	chr19	51479721	51479722	rs57392237	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK10	5,364 Icelandic ancestry individuals	NA	19q13.41		rs57392237-C	0.05614	2E-57		0.628316	[0.55-0.71] unit increase	Illumina [7506463] (imputed)	N
977	chr19	51482761	51482762	rs1722558	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK7	rs1722558-G	0.6225	4E-24	(KLK7, 3378_49_2)	0.2549684	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
977	chr19	51484561	51484562	rs2739419	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK7	rs2739419-G	0.908	1E-66	(Kallikrein-7, KLK7.3378.49.2)	0.7	[0.62-0.78] unit increase	Affymetrix [10572788] (imputed)	N
977	chr19	51485193	51485194	rs1654523	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19q13.41	NR	rs1654523-?	NR	6E-8	(Kallikrein 7)	0.24	[0.15-0.33] unit decrease	Illumina [4020654] (imputed)	N
977	chr19	51485621	51485622	rs2659067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	KLK7, CTB-147C22.9	rs2659067-A	0.08953722	1E-15	(EA, Kallikrein-7)	0.5981	[0.45-0.74] unit decrease	Affymetrix [509946]	N
977	chr19	51487066	51487067	rs1275221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK7	5,350 Icelandic ancestry individuals	NA	19q13.41		rs1275221-T	0.3832	2E-44		0.263431	[0.23-0.3] unit decrease	Illumina [7506463] (imputed)	N
977	chr19	51487066	51487067	rs1275221	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs1275221-C	0.638	1E-45	(Kallikrein-7, KLK7.3378.49.2)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
977	chr19	51487174	51487175	rs1624358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK7	5,350 Icelandic ancestry individuals	NA	19q13.41		rs1624358-T	0.07532	7E-33		0.414886	[0.35-0.48] unit decrease	Illumina [7506463] (imputed)	N
977	chr19	51491463	51491464	rs1122466	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	kallikrein-11 levels	21,758 European ancestry individuals	9,173 individuals	19q13.41		rs1122466-A	0.91	2E-50		0.3856	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
977	chr19	51503652	51503653	rs10410942	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK8	5,362 Icelandic ancestry individuals	NA	19q13.41		rs10410942-C	0.03589	9E-23		0.475787	[0.38-0.57] unit decrease	Illumina [7506463] (imputed)	N
977	chr19	51503652	51503653	rs10410942	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK8	rs10410942-T	0.9634375	5E-9	(KLK8, 13708_56_3)	0.3768268	[0.25-0.5] unit increase	Illumina [> 1000000] (imputed)	N
977	chr19	51503652	51503653	rs10410942	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK8	rs10410942-T	0.9634375	2E-17	(KLK8, 2834_54_1)	0.54183155	[0.42-0.67] unit increase	Illumina [> 1000000] (imputed)	N
977	chr19	51504414	51504415	rs34542531	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs34542531-C	0.016	1E-30	(Kallikrein-8, KLK8.13708.56.3)	1.2	[1-1.4] unit decrease	Affymetrix [10572788] (imputed)	N
977	chr19	51504807	51504808	rs74705037	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK8	rs74705037-A	0.045	6E-58	(Kallikrein-8, KLK8.13708.56.3)	0.93	[0.81-1.05] unit increase	Affymetrix [10572788] (imputed)	N
977	chr19	51504807	51504808	rs74705037	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK8	rs74705037-A	0.045	1E-28	(Kallikrein-8, KLK8.2834.54.1)	0.66	[0.54-0.78] unit increase	Affymetrix [10572788] (imputed)	N
978	chr19	51516344	51516345	rs2739430	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	19q13.41		rs2739430-T	0.42	9E-7		0.0165	[0.0098-0.0232] unit decrease	NR [8806780] (imputed)	N
978	chr19	51516344	51516345	rs2739430	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	19q13.41		rs2739430-T	0.42	3E-8		0.0141	[0.009-0.0192] unit decrease	NR [6098063] (imputed)	N
978	chr19	51517797	51517798	rs10426	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.41		rs10426-?	NR	5E-25		0.0255959	[0.021-0.03] unit increase	NR [6912294] (imputed)	N
978	chr19	51517797	51517798	rs10426	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.41		rs10426-G	0.786567	8E-27		0.026	[0.022-0.03] unit increase	NR [7250403] (imputed)	N
978	chr19	51517797	51517798	rs10426	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.41	NR	rs10426-A	0.213371	3E-26		0.025226	[0.021-0.03] unit increase	Affymetrix [16668957] (imputed)	N
978	chr19	51521820	51521821	rs62115757	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	19q13.41	KLK11	rs62115757-T	0.79	7E-76		0.77	unit increase	Illumina [5270624] (imputed)	N
978	chr19	51523001	51523002	rs10425377	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.41	NR	rs10425377-?	NR	9E-17	(Kallikrein 11)			Illumina [~ 4000000] (imputed)	N
978	chr19	51523202	51523203	rs2569454	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK10	rs2569454-C	0.64125	4E-54	(KLK10, 6227_1_3)	0.40501636	[0.35-0.46] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51523896	51523897	rs3760738	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK10	5,364 Icelandic ancestry individuals	NA	19q13.41		rs3760738-A	0.4086	2E-117		0.417866	[0.38-0.45] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51527363	51527364	rs1048328	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK11	5,360 Icelandic ancestry individuals	NA	19q13.41		rs1048328-A	0.06745	6E-153		0.949674	[0.88-1.02] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51527363	51527364	rs1048328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	19q13.41	NR	rs1048328-A	NR	2E-9		0.0271	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
978	chr19	51527363	51527364	rs1048328	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK11	rs1048328-G	0.93421875	2E-121	(KLK11, 7775_15_3)	1.1124095	[1.02-1.2] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51527363	51527364	rs1048328	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK11	rs1048328-G	0.93421875	1E-261	(KLK11, 2831_29_1)	1.5372918	[1.46-1.62] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51527363	51527364	rs1048328	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK11	rs1048328-A	0.083	6E-186	(Kallikrein-11, KLK11.2831.29.1)	1.2	[1.12-1.28] unit decrease	Affymetrix [10572788] (imputed)	N
978	chr19	51527969	51527970	rs117268623	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	kallikrein-11 levels	21,758 European ancestry individuals	9,173 individuals	19q13.41		rs117268623-T	0.026	4E-289		1.3809	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
978	chr19	51527969	51527970	rs117268623	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	19q13.41	NR	rs117268623-?	NR	4E-19	(Kallikrein-11)	1.51995	[1.19-1.85] unit decrease	Illumina [11901634] (imputed)	N
978	chr19	51527969	51527970	rs117268623	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	kallikrein-11 levels	up to 653 individuals	up to 317 individuals	19q13.41	KLK11	rs117268623-T	0.023626	5E-18		1.48	[1.15-1.81] unit decrease	Illumina [4840842] (imputed)	N
978	chr19	51534851	51534851	rs6146546	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	19q13.41	NR	rs6146546-?	NR	3E-6		4.38	[3.22-5.97]	Illumina [539000] (imputed)	N
978	chr19	51535129	51535130	rs3745540	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK12	rs3745540-G	0.594	3E-34	(Kallikrein-12, KLK12.3199.54.2)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
978	chr19	51535129	51535130	rs3745540	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	19q13.41	NR	rs3745540-?	NR	8E-29	(kallikrein 12)	0.33	[0.27-0.39] unit increase	Illumina [4020654] (imputed)	N
978	chr19	51538560	51538561	rs3760739	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK13	rs3760739-G	0.65859375	4E-54	(KLK13, 11152_46_3)	0.38849357	[0.34-0.44] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51539432	51539433	rs2569459	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK13	5,364 Icelandic ancestry individuals	NA	19q13.41		rs2569459-T	0.3385	1E-79		0.36618	[0.33-0.4] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51539432	51539433	rs2569459	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK13	5,349 Icelandic ancestry individuals	NA	19q13.41		rs2569459-T	0.3385	3E-39		0.243716	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51539605	51539606	rs3760744	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	KLK13	rs3760744-C	0.65859375	3E-27	(KLK13, 3200_49_2)	0.28486526	[0.23-0.34] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51544537	51544538	rs2691217	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	kallikrein-11 levels	21,758 European ancestry individuals	9,173 individuals	19q13.41		rs2691217-T	0.73	2E-10		0.0897	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
978	chr19	51546851	51546852	rs8103941	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	CTC-518B2.9, KLK12, CTC-518B2.10	rs8103941-G	0.2454819	5E-50	(Kallikrein-12)	0.7388	[0.65-0.83] unit increase	Affymetrix [509946]	N
978	chr19	51568846	51568847	rs2691247	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK13	5,364 Icelandic ancestry individuals	NA	19q13.41		rs2691247-A	0.04818	1E-32		0.519803	[0.43-0.61] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51584915	51584916	rs2569491	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK14	5,363 Icelandic ancestry individuals	NA	19q13.41		rs2569491-A	0.3318	9E-114		0.435689	[0.4-0.47] unit increase	Illumina [7506463] (imputed)	N
978	chr19	51584915	51584916	rs2569491	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DKK2	5,366 Icelandic ancestry individuals	NA	19q13.41		rs2569491-A	0.3318	1E-16		0.142495	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51584915	51584916	rs2569491	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2569491-G	0.65390625	3E-86	(KLK14, 8620_56_3)	0.501618	[0.45-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51584915	51584916	rs2569491	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2569491-G	0.65390625	2E-10	(DKK2, 6546_41_3)	0.1397194	[0.097-0.183] unit increase	Illumina [> 1000000] (imputed)	N
978	chr19	51584915	51584916	rs2569491	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	KLK14	rs2569491-A	0.3	4E-119	(Kallikrein-14, KLK14.8620.56.3)	0.57	[0.53-0.61] unit increase	Affymetrix [10572788] (imputed)	N
978	chr19	51584915	51584916	rs2569491	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	19q13.41	NR	rs2569491-?	NR	2E-6		0.0614	[0.036-0.087] unit increase	Illumina [at least 560000] (imputed)	N
978	chr19	51587642	51587643	rs3745542	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	KLK14	rs3745542-C	0.3057229	3E-12	(EA, Sialic acid-binding Ig-like lectin 9)	0.3363	[0.24-0.43] unit increase	Affymetrix [509946]	N
978	chr19	51596135	51596136	rs2691273	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	CTU1	rs2691273-G	0.4632427	3E-73	(Sialic acid-binding Ig-like lectin 9)	0.7635	[0.69-0.84] unit increase	Affymetrix [509946]	N
978	chr19	51598219	51598219	rs34456081	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	19q13.41	NR	rs34456081-CT	0.07386	3E-6		0.2706	[0.16-0.38] unit decrease	Illumina [10677593] (imputed)	N
978	chr19	51598668	51598669	rs11666870	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK14	5,363 Icelandic ancestry individuals	NA	19q13.41		rs11666870-A	0.4617	3E-9		0.111851	[0.075-0.149] unit decrease	Illumina [7506463] (imputed)	N
978	chr19	51600771	51600773	rs36120499	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs36120499-T	0.554	1E-14	(Kallikrein-14, KLK14.8620.56.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
978	chr19	51602297	51602298	rs12983578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.41		rs12983578-?	NR	8E-9				NR [~ 8900000] (imputed)	N
978	chr19	51607668	51607669	rs577015585	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	19q13.41		rs577015585-?	NR	4E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
978	chr19	51608802	51608803	rs2691254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2691254-T	0.5065625	8E-79	(UMOD, 9451_20_3)	0.48468372	[0.44-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51608802	51608803	rs2691254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2691254-T	0.5065625	5E-9	(SIGLEC7, 2742_68_2)	0.15593833	[0.1-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51608802	51608803	rs2691254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2691254-T	0.5065625	2E-359	(SIGLEC9, 3007_7_2)	0.95210534	[0.91-0.99] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51608802	51608803	rs2691254	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs2691254-T	0.5065625	1E-34	(CD5, 5596_75_3)	0.32474113	[0.27-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51615154	51615155	rs17801525	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	CTU1	rs17801525-A	0.1108325	4E-12	(Sialic acid-binding Ig-like lectin 9)	0.4915	[0.35-0.63] unit decrease	Affymetrix [509946]	N
978	chr19	51621560	51621561	rs62115964	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	19q13.41	NR	rs62115964-A	0.807	8E-6	(Rostral Anterior Cingulate)	0.005501514	[0.0031-0.0079] unit decrease	Affymetrix, Illumina [NR]	N
978	chr19	51626236	51626237	rs1039405	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1039405-G	0.5140625	3E-123	(UMOD, 9451_20_3)	0.56400603	[0.52-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51626236	51626237	rs1039405	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1039405-G	0.5140625	2E-723	(SIGLEC9, 3007_7_2)	1.1356859	[1.11-1.16] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51626236	51626237	rs1039405	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1039405-G	0.5140625	2E-52	(CD5, 5596_75_3)	0.3767364	[0.33-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
978	chr19	51627765	51627766	rs2673908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.41	SIGLEC9	rs2673908-G	0.557573	2E-21		0.021237653	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
978	chr19	51627765	51627766	rs2673908	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.41	SIGLEC9	rs2673908-T	0.4327	3E-21	(Siglec-9)	0.52499	[0.42-0.63] unit increase	Illumina [8683751] (imputed)	N
978	chr19	51627765	51627766	rs2673908	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.41	NR	rs2673908-A	NR	4E-44	(Sialic acid-binding Ig-like lectin 9)			Illumina [514227]	N
978	chr19	51627765	51627766	rs2673908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.41	SIGLEC9	rs2673908-G	0.5574	5E-12		0.02469605	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
978	chr19	51627765	51627766	rs2673908	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.41	SIGLEC9	rs2673908-G	0.5575	2E-10		0.02299613	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
978	chr19	51628528	51628529	rs2075803	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UMOD	5,365 Icelandic ancestry individuals	NA	19q13.41		rs2075803-A	0.4957	3E-223		0.549819	[0.52-0.58] unit increase	Illumina [7506463] (imputed)	N
978	chr19	51628528	51628529	rs2075803	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD5	5,367 Icelandic ancestry individuals	NA	19q13.41		rs2075803-A	0.4957	2E-89		0.364059	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
978	chr19	51628528	51628529	rs2075803	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.41	NR	rs2075803-?	NR	5E-208	(Siglec-9)			Illumina [~ 4000000] (imputed)	N
978	chr19	51628528	51628529	rs2075803	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.41	NR	rs2075803-A	0.444627	5E-10		0.0125828	[0.0086-0.0165] unit increase	NR [NR]	N
978	chr19	51628528	51628529	rs2075803	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC9	rs2075803-G	0.551	6E-2142	(Sialic acid-binding Ig-like lectin 9, SIGLEC9.3007.7.2)	1.23	[1.21-1.25] unit decrease	Affymetrix [10572788] (imputed)	N
978	chr19	51628528	51628529	rs2075803	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	19q13.41	SIGLEC9	rs2075803-G	0.5583	1E-8		0.0099	[0.0066-0.0132] unit increase	Illumina [246328]	N
978	chr19	51628528	51628529	rs2075803	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	NR	rs2075803-?	NR	7E-122	(EA, Sialic acid-binding Ig-like lectin 9)			Affymetrix [509946]	N
978	chr19	51632415	51632416	rs2569444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.41		rs2569444-G	NR	3E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
978	chr19	51632415	51632416	rs2569444	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs2569444-G	0.464	8E-637	(Sialic acid-binding Ig-like lectin 9, SIGLEC9.3007.7.2)	1.03	[0.99-1.07] unit decrease	Affymetrix [10572788] (imputed)	N
978	chr19	51633659	51633660	rs1568003	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC9	rs1568003-T	0.4	4E-32	(EA, Sialic acid-binding Ig-like lectin 9)	0.5297	[0.44-0.61] unit increase	Affymetrix [509946]	N
979	chr19	51642783	51642784	rs12983058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.41	SIGLEC7, SIGLEC19P	rs12983058-T	0.324886	8E-9		0.013804818	[0.0091-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51642783	51642784	rs12983058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.41	SIGLEC7, SIGLEC19P	rs12983058-T	0.324841	3E-9		0.014136799	[0.0095-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51642783	51642784	rs12983058	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs12983058-T	0.325	3E-28	(Sialic acid-binding Ig-like lectin 7, SIGLEC7.2742.68.2)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
979	chr19	51642783	51642784	rs12983058	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.41	NR	rs12983058-?	NR	1E-20	(Sialic acid-binding Ig-like lectin 7)			Illumina [514227]	N
979	chr19	51646139	51646140	rs140185670	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC7	rs140185670-C	0.08	2E-36	(Sialic acid-binding Ig-like lectin 7, SIGLEC7.2742.68.2)	0.61	[0.51-0.71] unit decrease	Affymetrix [10572788] (imputed)	N
979	chr19	51663185	51663186	rs137953543	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC7	5,365 Icelandic ancestry individuals	NA	19q13.41		rs137953543-C	0.01423	2E-16		0.648501	[0.49-0.8] unit decrease	Illumina [7506463] (imputed)	N
979	chr19	51701890	51701891	rs10421385	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC20P, SIGLEC17P, CTD-3187F8.14, CTD-3187F8.7, SIGLEC21P	rs10421385-G	0.310743	3E-18	(EA, Myeloid cell surface antigen CD33)	0.4117	[0.32-0.5] unit increase	Affymetrix [509946]	N
979	chr19	51704831	51704832	rs10417413	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD66b++ myeloid cell	1,464 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10417413-C	0.13538	3E-9		0.3236	[0.22-0.43] unit increase	Illumina [16829425] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on basophil	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03647	2E-95		1.971	[1.8-2.14] unit decrease	Illumina [16937736] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Monocytic Myeloid-Derived Suppressor Cells	1,569 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03774	2E-91		1.901	[1.73-2.07] unit decrease	Illumina [16949488] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Immature Myeloid-Derived Suppressor Cells	1,554 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03714	2E-81		1.823	[1.65-2] unit decrease	Illumina [16934262] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR-	1,558 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03704	1E-90		1.904	[1.73-2.08] unit decrease	Illumina [16943119] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b-	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.04387	1E-99		1.825	[1.67-1.98] unit decrease	Illumina [16999172] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b+	1,633 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.0433	6E-107		1.903	[1.75-2.06] unit decrease	Illumina [16998601] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14dim	1,577 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.0366	1E-101		2.02	[1.85-2.19] unit decrease	Illumina [16958230] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14-	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03689	5E-102		2.018	[1.85-2.19] unit decrease	Illumina [16961830] (imputed)	N
979	chr19	51709805	51709806	rs142760794	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs142760794-A	0.03719	1E-102		2.013	[1.84-2.18] unit decrease	Illumina [16961928] (imputed)	N
979	chr19	51713364	51713365	rs12985029	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	NR	rs12985029-?	NR	2E-66	(EA, Myeloid cell surface antigen CD33)			Affymetrix [509946]	N
979	chr19	51713742	51713743	rs3987765	25786224	Johnson EO	2015-03-18	PLoS One	Novel genetic locus implicated for HIV-1 acquisition with putative regulatory links to HIV replication and infectivity: a genome-wide association study.	HIV-1 susceptibility	628 African American high risk-cases, 1,376 African American high-risk controls, 327 European ancestry high-risk cases, 805 European ancestry high-risk controls	1,395 African American high-risk cases, 457 African American high-risk controls, 513 European ancestry high-risk cases, 168 European ancestry high-risk controls	19q13.41	SIGLEC17P, CD33	rs3987765-T	0.19	5E-6		1.35	[1.14-1.61] (AA)	Illumina [~ 8000000] (imputed)	N
979	chr19	51718316	51718317	rs1697573	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33- HLA DR+ Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs1697573-A	0.48091	2E-35		0.4103	[0.35-0.47] unit decrease	Illumina [17203588] (imputed)	N
979	chr19	51720697	51720698	rs116623489	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14-	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs116623489-T	0.01046	1E-9		1.078	[0.73-1.42] unit decrease	Illumina [16961830] (imputed)	N
979	chr19	51720697	51720698	rs116623489	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs116623489-T	0.01045	9E-9		1.02	[0.67-1.37] unit decrease	Illumina [16961928] (imputed)	N
979	chr19	51725823	51725824	rs273640	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Immature Myeloid-Derived Suppressor Cells	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs273640-T	0.54394	1E-50		0.5579	[0.49-0.63] unit decrease	Illumina [16934399] (imputed)	N
979	chr19	51726612	51726613	rs3826656	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on basophil	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3826656-A	0.73987	3E-28		0.4506	[0.37-0.53] unit increase	Illumina [16937736] (imputed)	N
979	chr19	51726612	51726613	rs3826656	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Immature Myeloid-Derived Suppressor Cells	1,554 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3826656-A	0.7397	9E-30		0.4647	[0.39-0.54] unit increase	Illumina [16934262] (imputed)	N
979	chr19	51726612	51726613	rs3826656	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR-	1,558 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3826656-A	0.73973	3E-24		0.4169	[0.34-0.5] unit increase	Illumina [16943119] (imputed)	N
979	chr19	51726612	51726613	rs3826656	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.41	NR	rs3826656-?	NR	3E-13	(Myeloid cell surface antigen CD33)			Illumina [514227]	N
979	chr19	51726612	51726613	rs3826656	18976728	Bertram L	2008-10-29	Am J Hum Genet	Genome-wide association analysis reveals putative Alzheimer's disease susceptibility loci in addition to APOE.	Alzheimer's disease	941 European ancestry cases and 404 European ancestry controls from 410 families	1,767 European ancestry cases and 838 European ancestry controls from 875 families	19q13.41	CD33	rs3826656-?	NR	6E-6				Affymetrix [484522]	N
979	chr19	51727961	51727962	rs3865444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.41		rs3865444-A	NR	1E-20		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
979	chr19	51727961	51727962	rs3865444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.41		rs3865444-A	NR	3E-14		0.0171	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
979	chr19	51727961	51727962	rs3865444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.41		rs3865444-A	NR	8E-16		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Granulocytic Myeloid-Derived Suppressor Cells Absolute Count	1,856 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21282	1E-12		0.2687	[0.19-0.34] unit decrease	Illumina [17202429] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ CD14dim Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21313	1E-16		0.3278	[0.25-0.4] unit decrease	Illumina [17203588] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ CD14- Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21313	2E-21		0.3767	[0.3-0.45] unit decrease	Illumina [17203588] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21313	4E-21		0.3696	[0.29-0.45] unit decrease	Illumina [17203588] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Monocytic Myeloid-Derived Suppressor Cells	1,569 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.18961	2E-153		1.151	[1.07-1.23] unit decrease	Illumina [16949488] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD66b++ myeloid cell	1,464 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.20936	2E-108		0.9497	[0.87-1.03] unit decrease	Illumina [16829425] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR-	1,558 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.18453	3E-145		1.138	[1.06-1.22] unit decrease	Illumina [16943119] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b-	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21206	2E-183		1.119	[1.05-1.19] unit decrease	Illumina [16999172] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b+	1,633 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21219	2E-191		1.139	[1.07-1.2] unit decrease	Illumina [16998601] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14dim	1,577 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.19341	8E-184		1.214	[1.14-1.29] unit decrease	Illumina [16958230] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14-	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.1936	9E-189		1.223	[1.15-1.29] unit decrease	Illumina [16961830] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.19379	3E-187		1.219	[1.15-1.29] unit decrease	Illumina [16961928] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD14+ monocyte	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21206	1E-190		1.143	[1.08-1.21] unit decrease	Illumina [16999172] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Basophil Absolute Count	1,857 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21325	8E-35		0.4855	[0.41-0.56] unit decrease	Illumina [17203507] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Basophil %CD33dim HLA DR- CD66b-	1,857 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs3865444-A	0.21325	1E-40		0.5183	[0.44-0.59] unit decrease	Illumina [17203507] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323827	7E-13		0.01718904	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323831	3E-10		0.015058698	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323931	1E-26		0.025752926	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323924	2E-23		0.023945916	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323773	9E-15		0.01831206	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323904	1E-24		0.024074517	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.41	CD33	rs3865444-A	0.323992	8E-13		0.01688486	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs3865444-C	0.68546	6E-11				Affymetrix, Illumina [22063850] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.41	NR	rs3865444-C	0.677932	1E-11		0.013596	[0.0097-0.0175] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs3865444-A	0.290281	2E-37				Affymetrix, Illumina [24588908] (imputed)	N
979	chr19	51727961	51727962	rs3865444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.41	NR	rs3865444-A	0.321718	1E-37		0.025179	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
979	chr19	51727961	51727962	rs3865444	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	19q13.41	NR	rs3865444-C	0.674506	4E-18		0.0191022	[0.015-0.023] unit increase	NR [NR]	N
979	chr19	51727961	51727962	rs3865444	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	19q13.41	CD33	rs3865444-?	NR	4E-8		1.0869565	[1.05-1.12]	Affymetrix [up to 7055881] (imputed)	N
979	chr19	51727961	51727962	rs3865444	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	19q13.41	CD33	rs3865444-?	NR	7E-6		1.1111112		Affymetrix [up to 7700000] (imputed)	N
979	chr19	51727961	51727962	rs3865444	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	19q13.41	CD33	rs3865444-A	0.32	6E-9		5.81	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
979	chr19	51727961	51727962	rs3865444	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	19q13.41	CD33	rs3865444-A	NR	4E-8		5.4802556	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
979	chr19	51727961	51727962	rs3865444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.41		rs3865444-?	NR	2E-14				NR [~ 8900000] (imputed)	N
979	chr19	51727961	51727962	rs3865444	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	19q13.41	CD33	rs3865444-?	NR	2E-6		1.0942049		Illumina [241551]	N
979	chr19	51727961	51727962	rs3865444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	19q13.41	CD33	rs3865444-A	0.3241	2E-10		0.02439036	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
979	chr19	51727961	51727962	rs3865444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	19q13.41	CD33	rs3865444-A	0.3242	7E-9		0.02247701	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
979	chr19	51727961	51727962	rs3865444	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	19q13.41	CD33	rs3865444-C	0.693	3E-6		1.06	[1.04-1.1]	Illumina [7055881] (imputed)	N
979	chr19	51727961	51727962	rs3865444	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	19q13.41	CD33	rs3865444-?	0.70	2E-9		1.1	[1.08-1.14]	Affymetrix, Illumina [2324889] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	19q13.41		rs12459419-T	NR	9E-21		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	19q13.41		rs12459419-T	NR	1E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.41		rs12459419-T	NR	1E-23		0.0223	[0.018-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	19q13.41		rs12459419-C	0.675	2E-10				Affymetrix [10369434] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	19q13.41		rs12459419-C	0.675	6E-14				Affymetrix [10369434] (imputed)	N
979	chr19	51728476	51728477	rs12459419	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	19q13.41		rs12459419-C	0.675	6E-11				Affymetrix [10369434] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Immature Myeloid-Derived Suppressor Cells	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs12459419-T	0.18228	1E-12		0.3509	[0.25-0.45] unit increase	Illumina [16934399] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.41	CD33	rs12459419-T	0.323941	7E-30		0.026739044	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.41	CD33	rs12459419-T	0.323911	5E-12		0.016417962	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.41	CD33	rs12459419-T	0.32389	2E-12		0.01665054	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.290492	4E-42				Affymetrix, Illumina [24649327] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.321624	3E-43		0.027106	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.299754	4E-19				Affymetrix, Illumina [23114412] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.322	7E-21		0.019244	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.29834	4E-30				Affymetrix, Illumina [23472807] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.322084	8E-33		0.024063	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.29798	1E-13				Affymetrix, Illumina [19905671] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	19q13.41	NR	rs12459419-T	0.322962	2E-14		0.016693	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
979	chr19	51728476	51728477	rs12459419	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.41	NR	rs12459419-?	NR	2E-77	(Siglec-3)			Illumina [~ 4000000] (imputed)	N
979	chr19	51728476	51728477	rs12459419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	19q13.41		rs12459419-?	NR	1E-32				NR [~ 8900000] (imputed)	N
979	chr19	51728476	51728477	rs12459419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.41		rs12459419-?	NR	1E-8				NR [~ 8900000] (imputed)	N
979	chr19	51728476	51728477	rs12459419	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	CD33	rs12459419-T	0.329	9E-445	(Myeloid cell surface antigen CD33, CD33.3166.92.1)	0.94	[0.9-0.98] unit decrease	Affymetrix [10572788] (imputed)	N
979	chr19	51728476	51728477	rs12459419	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	CD33	rs12459419-T	0.2824121	3E-165	(Myeloid cell surface antigen CD33)	1.133	[1.07-1.2] unit decrease	Affymetrix [509946]	N
979	chr19	51728476	51728477	rs12459419	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19q13.41	CD33	rs12459419-T	0.3243	1E-10		0.02507022	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
979	chr19	51728640	51728641	rs2455069	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Immature Myeloid-Derived Suppressor Cells Absolute Count	1,857 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs2455069-G	0.51937	1E-32		0.3938	[0.33-0.46] unit increase	Illumina [17203507] (imputed)	N
979	chr19	51728640	51728641	rs2455069	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Immature Myeloid-Derived Suppressor Cells %CD33dim HLA DR- CD66b-	1,857 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs2455069-G	0.51937	2E-14		0.2522	[0.19-0.32] unit increase	Illumina [17203507] (imputed)	N
979	chr19	51728640	51728641	rs2455069	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	19q13.41	CD33	rs2455069-G	NR	9E-9	(TAG(52:5;0))	0.1929	[0.13-0.26] unit decrease	Illumina [~ 9300000] (imputed)	N
979	chr19	51728640	51728641	rs2455069	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	19q13.41	CD33	rs2455069-G	NR	5E-8	(Total_TAG)	0.1819	[0.12-0.25] unit decrease	Illumina [~ 9300000] (imputed)	N
979	chr19	51728640	51728641	rs2455069	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	19q13.41	CD33	rs2455069-G	NR	3E-8	(TAG(54:6;0))	0.1795	[0.12-0.24] unit decrease	Illumina [~ 9300000] (imputed)	N
979	chr19	51729103	51729107	rs201074739	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Immature Myeloid-Derived Suppressor Cells	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs201074739-C	0.03864	3E-13		0.7156	[0.52-0.91] unit increase	Illumina [16934399] (imputed)	N
979	chr19	51729103	51729107	rs201074739	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Granulocytic Myeloid-Derived Suppressor Cells	1,244 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs201074739-C	0.03998	1E-42		1.427	[1.23-1.62] unit decrease	Illumina [16551140] (imputed)	N
979	chr19	51729103	51729107	rs201074739	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD66b++ myeloid cell	1,464 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs201074739-C	0.04564	7E-65		1.535	[1.37-1.7] unit decrease	Illumina [16829425] (imputed)	N
979	chr19	51729103	51729107	rs201074739	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD14+ monocyte	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs201074739-C	0.04564	5E-114		1.897	[1.75-2.05] unit decrease	Illumina [16999172] (imputed)	N
979	chr19	51729103	51729107	rs201074739	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs201074739-C	0.033	4E-39	(Myeloid cell surface antigen CD33, CD33.3166.92.1)	0.97	[0.83-1.11] unit decrease	Affymetrix [10572788] (imputed)	N
979	chr19	51731175	51731176	rs7245846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33+ HLA DR+ CD14- %CD33+ HLA DR+	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs7245846-A	0.22367	3E-15		0.3128	[0.24-0.39] unit decrease	Illumina [17203588] (imputed)	N
979	chr19	51731175	51731176	rs7245846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on basophil	1,555 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs7245846-A	0.19394	2E-150		1.131	[1.06-1.21] unit decrease	Illumina [16937736] (imputed)	N
979	chr19	51731175	51731176	rs7245846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Immature Myeloid-Derived Suppressor Cells	1,554 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs7245846-A	0.19342	6E-143		1.115	[1.04-1.19] unit decrease	Illumina [16934262] (imputed)	N
979	chr19	51731175	51731176	rs7245846	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Granulocytic Myeloid-Derived Suppressor Cells	1,244 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs7245846-A	0.18535	1E-58		0.8358	[0.74-0.93] unit decrease	Illumina [16551140] (imputed)	N
979	chr19	51735023	51735023	rs34912427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	19q13.41		rs34912427-TA	NR	2E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
979	chr19	51735023	51735023	rs34912427	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs34912427-TA	0.21378	3E-17		0.3662	[0.28-0.45] unit increase	Illumina [16999305] (imputed)	N
979	chr19	51736382	51736383	rs33978622	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33dim HLA DR- Absolute Count	1,856 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs33978622-C	0.21514	4E-33		0.4747	[0.4-0.55] unit decrease	Illumina [17203446] (imputed)	N
979	chr19	51737990	51737991	rs1354106	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	19q13.41		rs1354106-?	NR	2E-10				Illumina [NR] (imputed)	N
979	chr19	51737990	51737991	rs1354106	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Monocytic Myeloid-Derived Suppressor Cells Absolute Count	1,855 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs1354106-G	0.22397	2E-28		0.4306	[0.36-0.51] unit decrease	Illumina [17197940] (imputed)	N
979	chr19	51737990	51737991	rs1354106	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	CD33	rs1354106-T	0.6134375	6E-372	(CD33, 3166_92_1)	0.91230714	[0.87-0.95] unit increase	Illumina [> 1000000] (imputed)	N
979	chr19	51738916	51738917	rs35112940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.41	CD33	rs35112940-A	0.218216	4E-10		0.016934084	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on Monocytic Myeloid-Derived Suppressor Cells	1,569 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.57134	6E-14		0.2725	[0.2-0.34] unit increase	Illumina [16949488] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b-	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.5785899999999999	3E-25		0.3713	[0.3-0.44] unit increase	Illumina [16999172] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR+ CD11b+	1,633 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.5789500000000001	4E-29		0.3998	[0.33-0.47] unit increase	Illumina [16998601] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14dim	1,577 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.5728800000000001	6E-15		0.2826	[0.21-0.35] unit increase	Illumina [16958230] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+ CD14-	1,578 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.57283	8E-19		0.3202	[0.25-0.39] unit increase	Illumina [16961830] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33+ HLA DR+	1,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.5727800000000001	7E-18		0.3107	[0.24-0.38] unit increase	Illumina [16961928] (imputed)	N
979	chr19	51739225	51739226	rs10409348	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD14+ monocyte	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs10409348-G	0.5785899999999999	2E-21		0.3384	[0.27-0.41] unit increase	Illumina [16999172] (imputed)	N
979	chr19	51750212	51750213	rs11084061	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD33 on CD33dim HLA DR-	1,558 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs11084061-A	0.10237	3E-8		0.3428	[0.22-0.46] unit increase	Illumina [16943119] (imputed)	N
979	chr19	51770291	51770292	rs11668077	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR+	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs11668077-A	0.03857	2E-9		0.5751	[0.39-0.76] unit increase	Illumina [16999305] (imputed)	N
980	chr19	51773801	51773802	rs1878047	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	19q13.41	NR	rs1878047-G	0.37	5E-6	(females + males)	0.06	[NR] kg decrease	Illumina [318237]	N
980	chr19	51776116	51776117	rs8111074	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		19q13.41	SIGLECL1	rs8111074-G	0.713638	3E-8		0.00838998	[0.0054-0.0114] unit increase	Affymetrix [12370749]	N
980	chr19	51778951	51778952	rs12975233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.41	NR	rs12975233-C	NR	1E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
980	chr19	51781454	51781455	rs148108087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.41	NR	rs148108087-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
980	chr19	51781454	51781455	rs148108087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	19q13.41		rs148108087-?	NR	2E-11				NR [~ 8900000] (imputed)	N
980	chr19	51781454	51781455	rs148108087	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	19q13.41	NA	rs148108087-A	0.0522	2E-11		0.0302	[0.021-0.039] unit decrease	NR [~ 27400000] (imputed)	N
980	chr19	51796298	51796299	rs10414689	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		19q13.41	FLJ40235	rs10414689-T	NR	9E-7		0.7818	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
980	chr19	51802139	51802140	rs1710354	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD33	5,364 Icelandic ancestry individuals	NA	19q13.41		rs1710354-T	0.4059	6E-98		0.387404	[0.35-0.42] unit decrease	Illumina [7506463] (imputed)	N
980	chr19	51802139	51802140	rs1710354	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	Intergenic	rs1710354-T	0.37751	2E-18	(EA, Myeloid cell surface antigen CD33)	0.3874	[0.3-0.47] unit decrease	Affymetrix [509946]	N
980	chr19	51815242	51815243	rs4802779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	19q13.41		rs4802779-C	NR	1E-10		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
980	chr19	51815242	51815243	rs4802779	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	19q13.41	NR	rs4802779-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
980	chr19	51818150	51818151	rs6509525	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	19q13.41	NA	rs6509525-T	0.4735	7E-10		0.0106	[0.0073-0.0139] unit decrease	NR [~ 27400000] (imputed)	N
980	chr19	51828134	51828135	rs35982135	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	IGLON5	rs35982135-T	0.72515625	4E-7	(IGLON5, 6478_2_3)	0.13026778	[0.08-0.181] unit increase	Illumina [> 1000000] (imputed)	N
980	chr19	51861175	51861176	rs12985380	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.41	CLDND2	rs12985380-?	NR	5E-7	(adenosine diphosphate)	0.3920606	[0.24-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
980	chr19	51879033	51879034	rs3116139	25027321	Hoffmann TJ	2014-07-15	Hum Mol Genet	Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.	Glaucoma	658 African American prevalent cases, 1,062 African American incident cases, 6,067 African American controls, 153 Hispanic prevalent cases, 336 Hispanic incident cases, 2,685 Hispanic controls	NA	19q13.41	NR	rs3116139-C	0.066	3E-8	(AA, prevalent)	1.75	[1.43-2.13]	Affymetrix [up to 15784307] (imputed)	N
980	chr19	51879290	51879291	rs17716331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.41	NKG7	rs17716331-A	0.295341	8E-11		0.016035335	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
980	chr19	51879290	51879291	rs17716331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.41	NKG7	rs17716331-A	0.295349	1E-12		0.017581379	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
980	chr19	51879993	51879994	rs34733715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	19q13.41	NKG7	rs34733715-A	0.2624	7E-9		0.02374675	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
980	chr19	51886921	51886922	rs7250000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	19q13.41	LIM2	rs7250000-A	0.263974	2E-9		0.015098436	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
981	chr19	52003863	52003864	rs1973095	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1973095-T	0.8303125	8E-24	(RPN1, 6458_6_3)	0.32083777	[0.26-0.38] unit increase	Illumina [> 1000000] (imputed)	N
981	chr19	52003863	52003864	rs1973095	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1973095-T	0.8303125	8E-22	(SIGLEC6, 2741_22_2)	0.31423914	[0.25-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
981	chr19	52003863	52003864	rs1973095	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1973095-T	0.8303125	4E-24	(CTSL, 9275_2_3)	0.32217842	[0.26-0.38] unit increase	Illumina [> 1000000] (imputed)	N
981	chr19	52003863	52003864	rs1973095	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1973095-T	0.8303125	3E-26	(SIGLEC14, 8248_222_3)	0.33836755	[0.28-0.4] unit increase	Illumina [> 1000000] (imputed)	N
981	chr19	52003863	52003864	rs1973095	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs1973095-T	0.8303125	1E-371	(SIGLEC12, 10037_98_3)	1.1750646	[1.13-1.22] unit decrease	Illumina [> 1000000] (imputed)	N
981	chr19	52004073	52004074	rs3826667	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC12	rs3826667-T	0.835	3E-366	(Sialic acid-binding Ig-like lectin 12, SIGLEC12.10037.98.3)	1.13	[1.07-1.19] unit decrease	Affymetrix [10572788] (imputed)	N
981	chr19	52018950	52018951	rs12460678	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC6	5,361 Icelandic ancestry individuals	NA	19q13.41		rs12460678-T	0.08053	1E-210		0.977229	[0.92-1.04] unit increase	Illumina [7506463] (imputed)	N
981	chr19	52025246	52025247	rs2124910	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC6, CTD-3073N11.9	rs2124910-T	0.4073515	3E-46	(Sialic acid-binding Ig-like lectin 6)	0.653	[0.57-0.74] unit increase	Affymetrix [509946]	N
981	chr19	52027144	52027145	rs10221508	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.41	NR	rs10221508-?	NR	4E-22	(Siglec-6)			Illumina [~ 4000000] (imputed)	N
981	chr19	52030091	52030092	rs2864102	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC6	5,361 Icelandic ancestry individuals	NA	19q13.41		rs2864102-C	0.3127	2E-30		0.222511	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
981	chr19	52033157	52033158	rs35931837	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC6	rs35931837-T	0.1080402	4E-11	(EA, Sialic acid-binding Ig-like lectin 6)	0.4814	[0.34-0.62] unit decrease	Affymetrix [509946]	N
981	chr19	52033205	52033206	rs2005199	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC6, SIGLEC27P, CTD-3073N11.9	rs2005199-A	0.05220884	5E-29	(Sialic acid-binding Ig-like lectin 6)	1.102	[0.91-1.29] unit increase	Affymetrix [509946]	N
981	chr19	52033205	52033206	rs2005199	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	19q13.41	SIGLEC6	rs2005199-?	NR	4E-9	(Age-sex-adjusted)			Illumina [32817]	N
981	chr19	52033571	52033572	rs2305771	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	SIGLEC6	rs2305771-T	0.9203125	1E-114	(SIGLEC6, 2741_22_2)	0.99950373	[0.92-1.08] unit decrease	Illumina [> 1000000] (imputed)	N
982	chr19	52045123	52045124	rs140056884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC14	5,368 Icelandic ancestry individuals	NA	19q13.41		rs140056884-T	0.03845	2E-46		0.711917	[0.61-0.81] unit increase	Illumina [7506463] (imputed)	N
982	chr19	52045123	52045124	rs140056884	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	SIGLEC14	rs140056884-C	0.96234375	3E-28	(SIGLEC14, 5125_6_3)	0.7124689	[0.59-0.84] unit decrease	Illumina [> 1000000] (imputed)	N
982	chr19	52047313	52047314	rs3794986	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19q13.41	NR	rs3794986-T	0.428	1E-14		0.89	[0.86-0.92]	Illumina [11270530] (imputed)	N
982	chr19	52084835	52084836	rs1543922	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	19q13.41	intergenic	rs1543922-?	0.036	3E-7	(CSJC, EA, RF-)	34.48	[NR] unit increase	Illumina [534053]	N
982	chr19	52115084	52115085	rs74861892	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs74861892-A	0.007	4E-15	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	1.27	[0.96-1.58] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52115084	52115085	rs74861892	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs74861892-A	0.007	1E-13	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	1.2	[0.89-1.51] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52115644	52115645	rs3829655	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	19q13.41	NR	rs3829655-?	NR	4E-11	(Sialic acid-binding Ig-like lectin 14)			Illumina [514227]	N
982	chr19	52115943	52115944	rs73050865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC14	5,359 Icelandic ancestry individuals	NA	19q13.41		rs73050865-G	0.02175	2E-79		1.16271	[1.04-1.28] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52115943	52115944	rs73050865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPN1	5,357 Icelandic ancestry individuals	NA	19q13.41		rs73050865-G	0.02175	6E-69		1.09295	[0.97-1.21] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52115943	52115944	rs73050865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSL	5,359 Icelandic ancestry individuals	NA	19q13.41		rs73050865-G	0.02175	2E-75		1.14562	[1.02-1.27] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52115943	52115944	rs73050865	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs73050865-G	0.033	9E-49	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	1.01	[0.87-1.15] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52115943	52115944	rs73050865	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs73050865-G	0.033	7E-50	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	1.03	[0.89-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52118440	52118441	rs12984737	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs12984737-A	0.286585	3E-17				Affymetrix, Illumina [19872809] (imputed)	N
982	chr19	52120327	52120328	rs181481353	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC14	5,359 Icelandic ancestry individuals	NA	19q13.41		rs181481353-A	0.01786	5E-61		1.10538	[0.97-1.24] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52120327	52120328	rs181481353	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPN1	5,357 Icelandic ancestry individuals	NA	19q13.41		rs181481353-A	0.01786	9E-58		1.08762	[0.95-1.22] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52120327	52120328	rs181481353	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSL	5,359 Icelandic ancestry individuals	NA	19q13.41		rs181481353-A	0.01786	9E-58		1.08865	[0.96-1.22] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52120327	52120328	rs181481353	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs181481353-A	0.014	7E-15	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	0.87	[0.65-1.09] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52120327	52120328	rs181481353	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs181481353-A	0.014	6E-14	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	0.84	[0.62-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52127029	52127030	rs11084095	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	19q13.41	SIGLEC5, AC018755.18	rs11084095-A	0.41	5E-8		1.17	[1.11-1.24]	Affymetrix, Illumina [1722107] (imputed)	N
982	chr19	52127052	52127053	rs4801882	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	19q13.41	SIGLEC5	rs4801882-A	0.532	2E-18		0.882	[0.85-0.91]	Illumina [11270530] (imputed)	N
982	chr19	52127743	52127744	rs10414149	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	19q13.41	SIGLEC5	rs10414149-A	0.835	3E-9		1.2048193	[NR]	Illumina [4577171] (imputed)	N
982	chr19	52127948	52127949	rs6509558	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC5, RPL9P33	rs6509558-T	0.3123742	2E-18	(EA, Sialic acid-binding Ig-like lectin 14)	0.4187	[0.33-0.51] unit increase	Affymetrix [509946]	N
982	chr19	52128794	52128795	rs11084096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.41		rs11084096-?	NR	5E-16				NR [~ 8900000] (imputed)	N
982	chr19	52129096	52129097	rs113861918	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on granulocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	19q13.41		rs113861918-T	0.16777	6E-9		0.215	[0.14-0.29] unit decrease	Illumina [17914520] (imputed)	N
982	chr19	52130148	52130148	rs147859411	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC14	rs147859411-TTTTTG	0.121	7E-19	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.5125.6.3)	0.33	[0.25-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52130636	52130637	rs1106476	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGLEC14	5,368 Icelandic ancestry individuals	NA	19q13.41		rs1106476-A	0.1198	6E-38		0.374359	[0.32-0.43] unit decrease	Illumina [7506463] (imputed)	N
982	chr19	52130636	52130637	rs1106476	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC5, SIGLEC14	rs1106476-A	0.117	2E-309	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	1.19	[1.13-1.25] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52130636	52130637	rs1106476	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	SIGLEC5, SIGLEC14	rs1106476-A	0.117	1E-293	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	1.17	[1.11-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52131732	52131733	rs4284742	28449029	Munz M	2017-04-25	Hum Mol Genet	A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis.	Aggressive periodontitis	851 European ancestry cases, 6,836 European ancestry controls	223 cases, up to 564 controls	19q13.41	AC018755.18, SIGLEC5	rs4284742-G	0.76	1E-6		1.34	[1.19-1.50]	Illumina [at least 5870152] (imputed)	N
982	chr19	52132020	52132022	rs34312547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.317163	9E-14		0.01819008	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
982	chr19	52132020	52132022	rs34312547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.317106	5E-10		0.015282675	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52132020	52132022	rs34312547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.317134	1E-15		0.01946984	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52132020	52132022	rs34312547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.317131	7E-13		0.017543321	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52132020	52132022	rs34312547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.317152	5E-18		0.021116544	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52132020	52132022	rs34312547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	19q13.41	SIGLEC5	rs34312547-C	0.3197	2E-9		0.02376754	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
982	chr19	52132985	52132986	rs2278832	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs2278832-G	0.234	5E-176	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	0.81	[0.75-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52132985	52132986	rs2278832	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs2278832-G	0.234	2E-162	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	0.79	[0.73-0.85] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52133291	52133292	rs1973019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	19q13.41	SIGLEC5	rs1973019-G	0.20474	6E-10		0.0192638	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
982	chr19	52144571	52144572	rs11669500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.41	SIGLEC5	rs11669500-C	0.383133	4E-10		0.015770331	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
982	chr19	52144571	52144572	rs11669500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.41	SIGLEC5	rs11669500-C	0.382972	2E-9		0.015137748	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52149715	52149716	rs201390621	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs201390621-G	0.059	3E-13	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.5125.6.3)	0.45	[0.33-0.57] unit increase	Affymetrix [10572788] (imputed)	N
982	chr19	52151689	52151690	rs2864908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	19q13.41		rs2864908-A	NR	6E-14		0.0208	[0.015-0.026] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
982	chr19	52152999	52153000	rs12983362	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	19q13.41	NR	rs12983362-G	0.2647	2E-15		0.002122	[0.0016-0.0026] unit increase	Affymetrix [NR] (imputed)	N
982	chr19	52154904	52154905	rs10412972	25208887	Ma Q	2014-09-10	Blood	Genetic variants in PLG, LPA, and SIGLEC 14 as well as smoking contribute to plasma plasminogen levels.	Plasma plasminogen levels	up to 3,244 European ancestry individuals	NA	19q13.41	SIGLEC14	rs10412972-A	0.16	8E-9		0.026	[0.014-0.038] unit increase	Illumina [up to 4514079] (imputed)	N
982	chr19	52155400	52155401	rs73052804	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs73052804-T	0.077	6E-167	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.8248.222.3)	1.18	[1.1-1.26] unit decrease	Affymetrix [10572788] (imputed)	N
982	chr19	52158315	52158316	rs7250849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	19q13.41		rs7250849-T	0.106557	4E-9		0.021213586	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
982	chr19	52158315	52158316	rs7250849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.41		rs7250849-?	NR	1E-11				NR [~ 8900000] (imputed)	N
982	chr19	52158315	52158316	rs7250849	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	SIGLEC14, RPL7P51, SIGLEC5	rs7250849-T	0.1207243	4E-82	(Sialic acid-binding Ig-like lectin 14)	1.23	[1.12-1.34] unit decrease	Affymetrix [509946]	N
982	chr19	52160742	52160743	rs7259861	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.41	NR	rs7259861-?	NR	1E-35	(SIG14)			Illumina [~ 4000000] (imputed)	N
982	chr19	52160764	52160765	rs73052830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	19q13.41	NR	rs73052830-C	NR	2E-9		0.0231	[0.015-0.031] unit increase	Affymetrix [9000000] (imputed)	N
982	chr19	52161034	52161035	rs12459503	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.41		rs12459503-C	0.644113	7E-10		0.014245628	[0.0097-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
982	chr19	52161815	52161816	rs374693707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	19q13.41		rs374693707-T	0.066717	4E-8		0.0509274	[0.033-0.069] unit increase	Illumina [13471440] (imputed)	N
982	chr19	52163034	52163035	rs16982907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs16982907-C	0.82359375	8E-12	(SIGLEC14, 5125_6_3)	0.23029903	[0.16-0.3] unit increase	Illumina [> 1000000] (imputed)	N
982	chr19	52163034	52163035	rs16982907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs16982907-C	0.82359375	4E-162	(SIGLEC14, 8248_222_3)	0.8498814	[0.79-0.91] unit increase	Illumina [> 1000000] (imputed)	N
982	chr19	52163034	52163035	rs16982907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs16982907-C	0.82359375	2E-162	(CTSL, 9275_2_3)	0.8473768	[0.79-0.91] unit increase	Illumina [> 1000000] (imputed)	N
982	chr19	52163034	52163035	rs16982907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs16982907-C	0.82359375	2E-144	(RPN1, 6458_6_3)	0.80521786	[0.75-0.86] unit increase	Illumina [> 1000000] (imputed)	N
982	chr19	52163034	52163035	rs16982907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.41	NR	rs16982907-C	0.82359375	1E-10	(SIGLEC12, 10037_98_3)	0.21291229	[0.15-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
982	chr19	52163947	52163948	rs17660992	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.41	Intergenic	rs17660992-T	0.3505517	3E-12	(EA, Sialic acid-binding Ig-like lectin 14)	0.3185	[0.23-0.41] unit increase	Affymetrix [509946]	N
982	chr19	52164462	52164463	rs73052859	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	NR	rs73052859-G	0.145	6E-140	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.6458.6.3)	0.86	[0.8-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
983	chr19	52170040	52170040	rs140018774	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.41	snoU13	rs140018774-AAGGG	0.124488	2E-11		0.023305837	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
983	chr19	52179155	52179156	rs2864915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.41		rs2864915-T	0.39609	6E-14		0.017331623	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr19	52179155	52179156	rs2864915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs2864915-A	0.539932	3E-21				Affymetrix, Illumina [23467995] (imputed)	N
983	chr19	52179155	52179156	rs2864915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.41	NR	rs2864915-A	0.604097	1E-24		0.019619	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
983	chr19	52179938	52179939	rs12974234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.41		rs12974234-C	0.647226	2E-17		0.019755777	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr19	52182362	52182363	rs7255413	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	19q13.41		rs7255413-G	0.22	4E-9		5.89	z score increase	Affymetrix [9061022] (imputed)	N
983	chr19	52187801	52187802	rs1868940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	19q13.41	NR	rs1868940-A	NR	1E-12		0.0229	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
983	chr19	52193279	52193280	rs78367065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.41		rs78367065-?	NR	1E-15				NR [~ 8900000] (imputed)	N
983	chr19	52197239	52197240	rs75253143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.41		rs75253143-A	NR	4E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
983	chr19	52197456	52197457	rs35018336	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	19q13.41	NR	rs35018336-C	0.0747427	7E-6		1.1616684	[0.68-1.64] unit increase	Illumina [at least 621854] (imputed)	N
983	chr19	52204247	52204248	rs8112143	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	19q13.41	SIGLEC5	rs8112143-A	0.047	1E-8		1.88	[1.51-2.34]	Illumina [7068382] (imputed)	N
983	chr19	52220076	52220077	rs11084110	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	19q13.41	NA	rs11084110-T	0.7068	2E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
983	chr19	52237555	52237556	rs75724373	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19q13.41	Intergenic	rs75724373-?		8E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
983	chr19	52237555	52237556	rs75724373	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	19q13.41	Intergenic	rs75724373-?		5E-6		1.45	[1.24-1.70]	Illumina [7645193] (imputed)	N
983	chr19	52249946	52249947	rs2070745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.41	FPR1	rs2070745-G	0.365333	5E-10		0.014648632	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr19	52252383	52252384	rs112591851	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	19q13.41	NR	rs112591851-T	NR	4E-8		0.03774	[0.024-0.051] unit decrease	Affymetrix [10847151] (imputed)	N
983	chr19	52270086	52270087	rs17834679	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	19q13.41	HAS1, FPR1, FPR2, FPR3, ZNF577	rs17834679-C	NR	6E-6		1.2031		Illumina [1233578] (imputed)	N
983	chr19	52287451	52287452	rs7260516	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	19q13.41	FPR2, FPR3	rs7260516-A	0.36	3E-6		1.06	[1.03-1.08]	Illumina [161311]	N
983	chr19	52288182	52288183	rs10853845	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	19q13.41	FPR2	rs10853845-G	NR	2E-6		1.0484378	NR	Affymetrix, Illumina [8278136] (imputed)	N
984	chr19	52298280	52298281	rs12609373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	19q13.41		rs12609373-C	NR	9E-9		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
984	chr19	52298280	52298281	rs12609373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	19q13.41		rs12609373-?	NR	4E-15				NR [~ 8900000] (imputed)	N
984	chr19	52298575	52298576	rs12610825	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	19q13.41	FPR1, FPR3	rs12610825-A	0.280377	1E-8	(84 ms)	0.0347344	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
984	chr19	52301062	52301063	rs11667325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	19q13.41	FPR1, FPR3	rs11667325-A	0.663179	8E-10		0.014345356	[0.0098-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
984	chr19	52301062	52301063	rs11667325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	19q13.41	FPR1, FPR3	rs11667325-A	0.663184	1E-18		0.020587655	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
984	chr19	52301062	52301063	rs11667325	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	19q13.41	FPR1, FPR3	rs11667325-A	0.663192	3E-18		0.020363573	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
984	chr19	52301062	52301063	rs11667325	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	19q13.41	FPR1, FPR3	rs11667325-A	0.6625	7E-9		0.02189932	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
984	chr19	52304068	52304069	rs74256604	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.41	FPR3	rs74256604-A	0.1298	3E-11		0.0284	[0.02-0.037] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
984	chr19	52313867	52313868	rs7247412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	FPR3	rs7247412-C	0.271	5E-21	(Beta-1,4-galactosyltransferase 1, B4GALT1.13381.49.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
984	chr19	52313867	52313868	rs7247412	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.41	FPR3	rs7247412-C	0.271	4E-12	(Carbohydrate sulfotransferase 1, CHST1.7803.4.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
984	chr19	52314160	52314161	rs11670020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	19q13.41		rs11670020-G	NR	7E-14		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
984	chr19	52314160	52314161	rs11670020	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	19q13.41	FPR3, LOC105369197	rs11670020-G	0.14	3E-8				NR [> 9500000] (imputed)	N
984	chr19	52314160	52314161	rs11670020	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	19q13.41		rs11670020-?	NR	2E-18				NR [~ 8900000] (imputed)	N
984	chr19	52314654	52314655	rs28873836	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1C1	5,366 Icelandic ancestry individuals	NA	19q13.41		rs28873836-C	0.2736	3E-20		0.186652	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.41	FPR3	rs28873836-C	NR	8E-16				Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.41	FPR3	rs28873836-C	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.41	FPR3	rs28873836-C	NR	9E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.41	FPR3	rs28873836-C	NR	1E-18				Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.41	FPR3	rs28873836-C	NR	4E-6	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.41	FPR3	rs28873836-C	NR	1E-8		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52314654	52314655	rs28873836	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.41	FPR3	rs28873836-C	NR	2E-6		0.005723	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
984	chr19	52318379	52318380	rs12459560	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	19q13.41	FPR1, FPR2, FPR3, HCCAT3, LOC101928571, ZNF350, ZNF432, ZNF577, ZNF613, ZNF614, ZNF615, ZNF616, ZNF649, ZNF841	rs12459560-T	0.1535	9E-7		1.1823453		Illumina [8265319] (imputed)	N
984	chr19	52320114	52320115	rs10422101	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GALT1	5,355 Icelandic ancestry individuals	NA	19q13.41		rs10422101-C	0.2741	3E-17		0.162322	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
984	chr19	52320739	52320740	rs4802871	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	19q13.41	NR	rs4802871-A	0.3849	5E-10				Affymetrix, Illumina [at least 2500000] (imputed)	N
984	chr19	52324215	52324216	rs17695224	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19q13.41		rs17695224-A	0.2484	4E-9		0.0072	[0.0048-0.0096] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
984	chr19	52324215	52324216	rs17695224	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19q13.41	HAS1	rs17695224-A	0.239	7E-16	(Trans-ethnic initial)	0.029	[0.021-0.037] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
984	chr19	52324215	52324216	rs17695224	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.41	HAS1	rs17695224-A	0.26	2E-13		0.029	[NR] unit decrease	NR [NR] (imputed)	N
984	chr19	52324689	52324690	rs4802873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.41		rs4802873-C	NR	3E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
984	chr19	52338640	52338641	rs62110082	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	19q13.41	NR	rs62110082-?	NR	1E-6				NR [up to 8466825] (imputed)	N
984	chr19	52341060	52341061	rs721890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.41		rs721890-G	NR	9E-20		0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
984	chr19	52341756	52341757	rs1468642	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.41	FPR3	rs1468642-T	0.654875	8E-18		0.0172509	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
984	chr19	52341756	52341757	rs1468642	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.41	FPR3	rs1468642-T	0.654894	3E-14		0.0157175	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
984	chr19	52372975	52372976	rs10411161	21424380	Sehrawat B	2011-03-19	Hum Genet	Potential novel candidate polymorphisms identified in genome-wide association study for breast cancer susceptibility.	Breast cancer	302 European ancestry female cases, 321 European ancestry female controls	1,153 European ancestry female cases, 1,215 European ancestry female controls	19q13.41	ZNF577	rs10411161-T	0.13	7E-6		1.42	[1.22-1.65]	Affymetrix [782838]	N
984	chr19	52407285	52407286	rs8107388	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Macroscopic brain infarct	327 European ancestry cases, 582 European ancestry controls	369 individuals	19q13.41	NR	rs8107388-C	0.9	4E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
985	chr19	52445385	52445386	rs8113308	25964295	Khan S	2015-05-11	Clin Cancer Res	Polymorphism at 19q13.41 Predicts Breast Cancer Survival Specifically after Endocrine Therapy.	Survival in endocrine treated breast cancer (estrogen-receptor positive)	352 European ancestry cases with endocrine therapy, 254 European ancestry cases without endocrine therapy, 597 European ancestry controls	3,330 European ancestry cases with endocrine therapy, 42 European ancestry cases without endocrine therapy, 1,351 European ancestry controls	19q13.41	ZNF613	rs8113308-G	0.152	6E-7		1.69	[1.37-2.07]	Illumina [486478]	N
985	chr19	52449839	52449840	rs187581013	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	19q13.41		rs187581013-A	0.99	9E-10				NR [NR] (imputed)	N
985	chr19	52449839	52449840	rs187581013	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function)	9,567 European ancestry individuals	NA	19q13.41		rs187581013-A	0.99	7E-6		0.61	[0.34-0.88] unit decrease	NR [NR] (imputed)	N
985	chr19	52480051	52480052	rs192424319	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	19q13.41		rs192424319-A	0.01	3E-8				NR [NR] (imputed)	N
985	chr19	52480051	52480052	rs192424319	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function)	9,567 European ancestry individuals	NA	19q13.41		rs192424319-A	0.01	8E-6		0.61	[0.34-0.88] unit increase	NR [NR] (imputed)	N
985	chr19	52494777	52494778	rs1715	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	19q13.41	NR	rs1715-T	NR	6E-7	(5 degree of freedom test)	1.41	[1.29-1.53]	NR [1252901] (imputed)	N
985	chr19	52532270	52532271	rs2288884	24280104	Wu AC	2013-11-23	J Allergy Clin Immunol	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	ZNF614	rs2288884-T	0.34	5E-8				Illumina [449540]	N
985	chr19	52552668	52552669	rs11667001	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.41	ZNF614	rs11667001-?	NR	9E-6	(TAG 54:1)	0.24126613	[0.13-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
986	chr19	52586918	52586919	rs12460587	24280104	Wu AC	2013-11-23	J Allergy Clin Immunol	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	ZNF841, ZNF432	rs12460587-G	0.33	2E-9				Illumina [449540]	N
986	chr19	52601398	52601399	rs11666341	24280104	Wu AC	2013-11-23	J Allergy Clin Immunol	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	ZNF841	rs11666341-A	0.45	1E-9				Illumina [449540]	N
986	chr19	52604301	52604302	rs73578849	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	19q13.41	ZNF616, ZNF841	rs73578849-G	NR	3E-7	(AA)	1.724138		Illumina [at least 360704] (imputed)	N
986	chr19	52607764	52607765	rs10411428	24280104	Wu AC	2013-11-23	J Allergy Clin Immunol	Inhaled corticosteroid treatment modulates ZNF432 gene variant's effect on bronchodilator response in asthmatics.	Bronchodilator response in asthma (inhaled corticosteroid treatment interaction)	172 European ancestry cases, 409 European ancestry controls	227 European ancestry cases	19q13.41	NR	rs10411428-T	0.41	1E-9				Illumina [449540]	N
986	chr19	52615450	52615451	rs749618	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	19q13.41	ZNF616	rs749618-G	0.05	1E-6		0.02	[0.012-0.028] unit increase	Illumina [7411206] (imputed)	N
986	chr19	52659990	52659991	rs1821278	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.41	ZNF616	rs1821278-?	NR	5E-6	(TAG 56:5)	0.22310913	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
987	chr19	52761030	52761031	rs8108607	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	19q13.41		rs8108607-C	NR	9E-6		0.38	[0.24-0.62]	Illumina [NR] (imputed)	N
987	chr19	52787470	52787471	rs2434422	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	19q13.41	MIR643, ZNF766	rs2434422-C	NR	4E-6		0.47	[0.27-0.67] unit decrease	NR [5896100] (imputed)	N
987	chr19	52819814	52819815	rs12978395	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		19q13.41	NR	rs12978395-A	NR	2E-6		1.2327157	[1.13-1.34]	Affymetrix [5734850] (imputed)	N
988	chr19	52859827	52859828	rs321946	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	19q13.41	NR	rs321946-?		3E-6		3.552	[2.15-4.96] unit decrease	Illumina [~ 4900000] (imputed)	N
988	chr19	52886136	52886137	rs324126	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	19q13.41	Intergenic	rs324126-?	NR	6E-6		1.36	[NR]	Affymetrix [492217] (imputed)	N
988	chr19	52915964	52915965	rs71180459	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	19q13.41		rs71180459-T	0.897418233456489	2E-8		0.0397913	[0.026-0.054] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
989	chr19	52991323	52991324	rs565767630	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	19q13.41	ZNF578	rs565767630-T	0.0015	1E-6		0.6546	[0.39-0.92] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
989	chr19	53013798	53013799	rs1984450	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	19q13.41	ZNF578	rs1984450-A	0.1	3E-7	(trajectory)	5.15	z-score decrease	Illumina [866099] (imputed)	N
989	chr19	53019390	53019391	rs67127431	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.41		rs67127431-?	NR	6E-8		0.0122947	[0.0079-0.0167] unit increase	NR [6912294] (imputed)	N
989	chr19	53030197	53030198	rs162277	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	19q13.41	ZNF808	rs162277-C	0.79	7E-6		1.41	[1.26-1.63]	Illumina [6220060] (imputed)	N
989	chr19	53065578	53065579	rs8113404	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.41		rs8113404-C	0.695414	2E-8		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
989	chr19	53065813	53065814	rs8103262	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	19q13.41	NR	rs8103262-C	0.305004	3E-9		0.012519	[0.0084-0.0167] unit increase	Affymetrix [16668957] (imputed)	N
990	chr19	53085846	53085847	rs144556038	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	19q13.41	ZNF701	rs144556038-T	3.0E-4	2E-6		3.6		Affymetrix [at least 751455]	N
990	chr19	53086945	53086946	rs190191374	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	RC9 sp900317925 abundance in stool	5,959 Finnish ancestry individuals	NA	19q13.41		rs190191374-T	0.0122586	2E-8		0.207239	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
990	chr19	53159624	53159625	rs35424224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	19q13.41		rs35424224-?	NR	2E-8				NR [~ 8900000] (imputed)	N
991	chr19	53217905	53217906	rs2547950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.41	NR	rs2547950-A	0.645395	3E-10		0.013016	[0.009-0.0171] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
991	chr19	53228992	53228993	rs11665661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.41		rs11665661-?	NR	3E-10				NR [~ 8900000] (imputed)	N
991	chr19	53234160	53234161	rs28785552	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	19q13.41		rs28785552-?	NR	9E-6	(MLM)	0.1835087	[0.1-0.26] unit increase	Illumina [~ 9000000] (imputed)	N
991	chr19	53278952	53278953	rs7507442	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	19q13.41	NA	rs7507442-A	0.6193	8E-6		0.3481	[0.2176-0.5567]	Illumina [243345]	N
991	chr19	53280251	53280252	rs10414169	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	19q13.41	NR	rs10414169-T	0.0183	9E-6		131.0	[74-189] unit increase	NR [9714326] (imputed)	N
991	chr19	53280251	53280252	rs10414169	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	19q13.41	ZNF600	rs10414169-A	0.982	6E-6	(EA)	0.402	[0.23-0.58] unit decrease	Illumina [NR] (imputed)	N
991	chr19	53284134	53284135	rs10404486	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	19q13.41	ZNF600	rs10404486-?	NR	9E-9	(proportions)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
991	chr19	53313043	53313044	rs140094156	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	19q13.41	ZNF600	rs140094156-T	0.0338633685794904	8E-6		0.0068326	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
991	chr19	53330668	53330669	rs2013647	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	19q13.41	NR	rs2013647-?	NR	3E-6				Affymetrix [NR]	N
991	chr19	53331431	53331432	rs191281700	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	19q13.41	NR	rs191281700-A	0.007565	4E-6		0.8081	[0.47-1.15] unit increase	Illumina [10677593] (imputed)	N
992	chr19	53384184	53384185	rs6509701	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	19q13.41	ZNF320	rs6509701-?	0.7	5E-6		1.4084507	[NR]	Illumina [1882172] (imputed)	N
992	chr19	53388976	53388977	rs8106886	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.41	NR	rs8106886-?	NR	2E-10		0.22	[0.16-0.28] unit increase	Illumina [at least 830937] (imputed)	N
992	chr19	53400759	53400760	rs3810115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.41	ZNF320	rs3810115-A	0.475839	4E-13		0.016391378	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
992	chr19	53400759	53400760	rs3810115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.41	ZNF320	rs3810115-A	0.476233	2E-12		0.015607849	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
992	chr19	53400759	53400760	rs3810115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.41	NR	rs3810115-A	0.490896	1E-10				Affymetrix, Illumina [23467995] (imputed)	N
992	chr19	53400759	53400760	rs3810115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.41	NR	rs3810115-A	0.476408	5E-12		0.012971	[0.0093-0.0167] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
992	chr19	53425503	53425504	rs56702993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.41	ZNF888	rs56702993-T	0.223709	2E-10		0.019792147	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
992	chr19	53451290	53451291	rs9304742	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	19q13.41	ZNF816A	rs9304742-T	0.643	6E-7		1.17	[1.1-1.25]	Illumina [up to 4778154] (imputed)	N
992	chr19	53454788	53454789	rs12459008	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	19q13.41	ZNF816A	rs12459008-A	NR	4E-6		1.162	[1.090-1.238]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
992	chr19	53456491	53456491	rs66502718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	19q13.41		rs66502718-CA	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
992	chr19	53460860	53460861	rs11084211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	19q13.41	NR	rs11084211-A	NR	4E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
992	chr19	53462956	53462957	rs7507133	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	19q13.41	NR	rs7507133-T	0.33	5E-11		0.0131	[0.0091-0.0171] unit decrease	NR [NR]	N
993	chr19	53599255	53599256	rs187171029	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urate levels	2077 British ancestry individuals from 6863 families.	NA	19q13.41	ZNF160	rs187171029-T	0.006	2E-8				Illumina [24111857] (imputed)	N
994	chr19	53666659	53666660	rs1133146	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	19q13.42	ZNF665	rs1133146-A	0.956	5E-6	(Allele model)	1.52	[1.01-2.29]	Illumina [508761]	N
994	chr19	53670950	53670951	rs138126300	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	19q13.42	ZNF665	rs138126300-A	NR	7E-6		11.6948	[6.75-16.63] unit increase	Illumina [6097251] (imputed)	N
994	chr19	53682041	53682042	rs16984547	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	19q13.42	ZNF665	rs16984547-?	NR	4E-6		1.43	[1.23-1.66]	Illumina [6103628] (imputed)	N
994	chr19	53701892	53701893	rs73935272	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.42	NR	rs73935272-G	0.01394	2E-8	(ACLY)	0.2165	NR unit increase	Illumina [1671387] (imputed)	N
995	chr19	53780025	53780026	rs2965260	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	19q13.42	NR	rs2965260-C	0.898395713962946	9E-6	(IGP44)	0.2293	[0.13-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
995	chr19	53805814	53805815	rs3975333	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of severe pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	19q13.42	NR	rs3975333-T	0.09	2E-6		1.49	unit increase	Illumina [8591557] (imputed)	N
995	chr19	53816636	53816637	rs7248770	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.42	VN1R4	rs7248770-?	NR	5E-6	(SM 18:0)	0.62519705	[0.36-0.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
995	chr19	53818137	53818138	rs571375862	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.42	NR	rs571375862-T	0.01045	2E-9	(VAPB)	0.06442	NR unit increase	Illumina [1671387] (imputed)	N
995	chr19	53833711	53833712	rs11672485	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.42	NR	rs11672485-C	0.49037699999999995	1E-12		0.0054648	[0.0038-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
995	chr19	53833711	53833712	rs11672485	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.42	NR	rs11672485-C	0.49037699999999995	7E-9		0.00517008	[0.0033-0.007] unit increase	Affymetrix [16582965] (imputed)	N
995	chr19	53837109	53837110	rs7256521	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	19q13.42	NR	rs7256521-A	NR	4E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
996	chr19	53946526	53946527	rs6509771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	19q13.42		rs6509771-C	NR	2E-8		0.0892	[0.058-0.12] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
996	chr19	53973784	53973785	rs2927694	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	19q13.42	Intergenic	rs2927694-C	NR	8E-7	(between families)	4.928	unit increase	Affymetrix [up to 15107142] (imputed)	N
996	chr19	53988841	53988841	rs571848662	31594949	Nievergelt CM	2019-10-08	Nat Commun	International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci.	Post-traumatic stress disorder	23,212 European ancestry cases, 4,363 African ancestry cases, 1,981 Latino and Native American ancestry cases, 151,447 European ancestry controls, 10,976 African ancestry controls, 3,722 Latino and Native American ancestry controls	NA	19q13.42	NR	rs571848662-TATAC	NR	3E-6	(EA)	1.0869565	NR	Affymetrix, Illumina [~ 1175791] (imputed)	N
997	chr19	54080066	54080067	rs61744130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19q13.42		rs61744130-?	NR	2E-9				NR [~ 8900000] (imputed)	N
997	chr19	54102896	54102897	rs58474216	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.42	NR	rs58474216-G	0.01045	1E-10	(VAPB)	0.06865	NR unit increase	Illumina [1671387] (imputed)	N
998	chr19	54193169	54193170	rs8104156	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	19q13.42	MIR526B	rs8104156-T	0.3394	5E-6		1.3601	[1.23-1.49]	Illumina [10736316] (imputed)	N
998	chr19	54211122	54211122	rs199738075	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	19q13.42	intergenic	rs199738075-TGG	NR	9E-6				Illumina [up to 11995908] (imputed)	N
998	chr19	54254387	54254388	rs75928006	34016946	Wu LS	2021-05-20	Transl Psychiatry	Genome-wide association study of early-onset bipolar I disorder in the Han Taiwanese population.	Bipolar disorder (early vs late onset)	516 Han Taiwanese ancestry cases, 790 Han Taiwanese ancestry controls	153 Han Taiwanese ancestry cases, 320 Han Taiwanese ancestry controls	19q13.42	MIR522	rs75928006-?	NR	9E-8		2.58	[1.86-3.60] unit increase	Illumina [4750978] (imputed)	N
999	chr19	54284688	54284689	rs4599029	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	19q13.42	NLRP12	rs4599029-G	0.74	1E-8		1.16	[1.11-1.22]	Illumina [at least 371504] (imputed)	N
999	chr19	54311089	54311090	rs11084300	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	19q13.42	NR	rs11084300-C	NR	8E-6		0.1284	[0.072-0.185] SD units decrease	NR [10700000] (imputed)	N
999	chr19	54319623	54319624	rs62143194	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-1-receptor antagonist levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62143194-C	0.78	5E-59		0.1908	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	9E-71	(Lysophosphatidylcholine acyltransferase 2, LPCAT2.11175.45.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	7E-31	(Tyrosine-protein kinase Fgr, FGR.3810.50.2)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	5E-19	(Very long-chain acyl-CoA synthetase, SLC27A2.9045.3.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	3E-17	(Osteocalcin, BGLAP.11067.13.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	3E-13	(Low-density lipoprotein receptor-related protein 1, soluble, LRP1.8601.167.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	2E-38	(Riboflavin kinase, RFK.13059.33.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	2E-139	(Low-density lipoprotein receptor-related protein 1B, LRP1B.11275.94.3)	0.71	[0.65-0.77] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	1E-42	(Double-stranded RNA-binding protein Staufen homolog 1, STAU1.12471.47.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	1E-14	(WSC domain-containing protein 2, WSCD2.6274.15.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	1E-14	(Tumor necrosis factor receptor superfamily member 16, NGFR.8374.5.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	1E-14	(Inosine-5'-monophosphate dehydrogenase 1, IMPDH1.5229.90.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54319623	54319624	rs62143194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143194-G	0.224	1E-12	(Killer cell lectin-like receptor subfamily F member 1, KLRF1.5098.79.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	7E-18	(Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1.9884.8.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	3E-92	(Immunoglobulin superfamily DCC subclass member 3, IGDCC3.11952.1.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	2E-73	(Charged multivesicular body protein 3, VPS24.12508.9.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	2E-13	(Interleukin-12 receptor subunit beta-1, IL12RB1.2632.5.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	1E-97	(Stathmin-3, STMN3.8019.73.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	1E-13	(Lymphotactin, XCL1.4143.74.2)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	1E-11	(Plasmin, PLG.4150.75.2)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320635	54320636	rs62143196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143196-G	0.224	1E-11	(C-X-C motif chemokine 5, CXCL5.2979.8.2)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320641	54320642	rs111774113	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19q13.42		rs111774113-?	NR	5E-8				Affymetrix [NR] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	9E-17	(Regulator of G-protein signaling 18, RGS18.13982.33.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	9E-15	(Vacuolar protein sorting-associated protein 4A, VPS4A.11476.43.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	9E-15	(Purine nucleoside phosphorylase, PNP.10039.32.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-76	(Ribosomal protein S6 kinase alpha-6, RPS6KA6.12688.115.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-65	(Ubiquitin-conjugating enzyme E2 N, UBE2N.3905.62.1)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-49	(Prenylcysteine oxidase-like, PCYOX1L.5599.88.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-49	(General transcription factor II-I, GTF2I.13609.11.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-45	(Stromal membrane-associated protein 1, SMAP1.11649.3.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-44	(Mothers against decapentaplegic homolog 2, SMAD2.10364.6.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-31	(Malate dehydrogenase, cytoplasmic, MDH1.3853.56.1)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-29	(Docking protein 2, DOK2.14246.50.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-27	(CD226 antigen, CD226.5721.1.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-26	(Nuclear factor erythroid 2-related factor 1, NFE2L1.11154.3.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-21	(Platelet-activating factor acetylhydrolase IB subunit beta, PAFAH1B2.2642.4.1)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-18	(Testican-1, SPOCK1.5490.53.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-18	(Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1.9884.8.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	8E-12	(Alanine--tRNA ligase, cytoplasmic, AARS.12340.17.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-86	(Heterogeneous nuclear ribonucleoprotein A/B, HNRNPAB.8894.80.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-39	(WAP four-disulfide core domain protein 3, WFDC3.6384.19.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-34	(E3 ubiquitin-protein ligase DTX3L, DTX3L.11643.73.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-26	(Ras-related C3 botulinum toxin substrate 3, RAC3.5271.5.1)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-24	(Dual specificity mitogen-activated protein kinase kinase 3, MAP2K3.6151.18.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-21	(Vigilin, HDLBP.13570.43.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-21	(2'-5'-oligoadenylate synthase 1, OAS1.10361.25.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-19	(Bifunctional polynucleotide phosphatase/kinase, PNKP.13657.2.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-18	(Talin-2, TLN2.14082.56.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-16	(Dihydropteridine reductase, QDPR.11257.1.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	7E-14	(Proteasome activator complex subunit 1, PSME1.5918.5.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	6E-72	(Peptidyl-prolyl cis-trans isomerase H, PPIH.12449.16.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	6E-54	(IST1 homolog, IST1.12434.25.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	6E-36	(ICOS ligand, ICOSLG.5061.27.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	6E-31	(Translation initiation factor eIF-2B subunit alpha, EIF2B1.10080.9.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	5E-59	(14-3-3 protein family, YWHAB.YWHAE.YWHAG.YWHAH.YWHAQ.YWHAZ.SFN.4707.50.2)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	5E-39	(Glucosamine 6-phosphate N-acetyltransferase, GNPNAT1.13954.9.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	5E-16	(Ephrin type-A receptor 5, EPHA5.14089.41.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	5E-12	(Nuclear protein localization protein 4 homolog, NPLOC4.12993.21.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-91	(40S ribosomal protein S3a, RPS3A.5484.63.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-66	(DnaJ homolog subfamily B member 2, DNAJB2.11438.6.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-62	(Cryptic protein, CFC1.3294.55.2)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-59	(Tyrosine-protein phosphatase non-receptor type 7, PTPN7.14688.6.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-44	(Signal transducer and activator of transcription 1-alpha/beta, STAT1.10370.21.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-36	(DnaJ homolog subfamily C member 17, DNAJC17.14655.1.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-32	(Tubulin--tyrosine ligase, TTL.13973.62.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-26	(Biliverdin reductase A, BLVRA.11382.5.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-22	(Tax1-binding protein 3, TAX1BP3.12498.12.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-19	(Tyrosine-protein kinase Lyn, isoform B, LYN.3381.24.2)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	4E-120	(Cold-inducible RNA-binding protein, CIRBP.12724.81.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-90	(Eukaryotic translation initiation factor 1A, X-chromosomal, EIF1AX.9850.38.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-88	(Uncharacterized protein KIAA0040, KIAA0040.14603.51.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-61	(Signal transducer and activator of transcription 1-alpha/beta, STAT1.12351.25.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-46	(Tubulin-specific chaperone E, TBCE.11211.7.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-36	(B-cell lymphoma/leukemia 10, BCL10.8768.4.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-32	(Lon protease homolog, mitochondrial, LONP1.6398.12.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-32	(HemK methyltransferase family member 2, N6AMT1.11096.57.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-29	(Polyadenylate-binding protein 3, PABPC3.10447.18.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-27	(Casein kinase I isoform gamma-2, CSNK1G2.12653.13.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-22	(Ubiquitin-conjugating enzyme E2 variant 1, UBE2V1.11626.7.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-22	(Gamma-aminobutyric acid receptor-associated protein-like 2, GABARAPL2.12494.99.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-19	(Tyrosine-protein kinase Lyn, LYN.3453.87.2)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-19	(14-3-3 protein zeta/delta, YWHAZ.5858.6.5)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-17	(Eukaryotic translation initiation factor 3 subunit J, EIF3J.13497.34.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-15	(UV excision repair protein RAD23 homolog B, RAD23B.12522.6.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-15	(40S ribosomal protein S3, RPS3.5026.66.1)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-14	(Phosphomevalonate kinase, PMVK.12450.42.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-12	(Obg-like ATPase 1, OLA1.12659.13.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-12	(Gamma-enolase, ENO2.11083.23.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	3E-101	(Eukaryotic translation initiation factor 3 subunit G, EIF3G.11454.87.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-81	(Dual specificity mitogen-activated protein kinase kinase 1, MAP2K1.2864.2.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-78	(Protein kinase C beta type (splice variant beta-II), PRKCB.5475.10.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-54	(Eukaryotic translation initiation factor 5A-1, EIF5A.5888.29.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-53	(Protein DGCR14, DGCR14.11356.19.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-44	(RAC-beta serine/threonine-protein kinase, AKT2.5360.9.2)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-42	(ETS domain-containing protein Elk-3, ELK3.5707.55.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-40	(Apoptotic protease-activating factor 1, APAF1.13583.19.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-39	(Arfaptin-1, ARFIP1.13488.3.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-38	(MAP kinase-activated protein kinase 2, MAPKAPK2.3820.68.2)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-37	(Glutaredoxin-2, mitochondrial, GLRX2.12486.8.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-27	(Immunoglobulin-binding protein 1, IGBP1.12358.6.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-26	(Serine-rich single-pass membrane protein 1, SSMEM1.8298.8.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-17	(Tyrosine-protein kinase BTK, BTK.3416.2.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-13	(Serine/threonine-protein kinase PAK 4, PAK4.13719.19.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-13	(Carbonyl reductase [NADPH] 1, CBR1.12381.26.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	2E-12	(Rho GTPase-activating protein 30, ARHGAP30.12807.89.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-67	(Ubiquitin-like protein 4A, UBL4A.11490.42.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-46	(Growth factor receptor-bound protein 2, GRB2.5464.52.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-42	(Inhibitor of growth protein 1, ING1.3888.8.1)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-41	(Acyl-CoA-binding domain-containing protein 6, ACBD6.10075.75.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-40	(Aldose reductase, AKR1B1.9854.36.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-39	(Beta-arrestin-1, ARRB1.12643.4.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-36	(Eukaryotic translation initiation factor 4B, EIF4B.14675.20.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-35	(Acid ceramidase, ASAH1.5748.20.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-29	(Polyadenylate-binding protein 4, PABPC4.12603.87.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-24	(Troponin I, cardiac muscle, TNNI3.5930.54.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-24	(Next to BRCA1 gene 1 protein, NBR1.7696.104.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-23	(Fructose-bisphosphate aldolase A, ALDOA.5864.10.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-19	(Caspase-10, CASP10.5340.24.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-18	(Glucosamine-6-phosphate isomerase 1, GNPDA1.8909.77.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-17	(Rho guanine nucleotide exchange factor 1, ARHGEF1.13976.9.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-16	(Protein kinase C iota type, PRKCI.3379.29.1)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-14	(Protein-tyrosine kinase 2-beta, PTK2B.8918.64.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-13	(Guanine nucleotide-binding protein G(k) subunit alpha, GNAI3.12650.43.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320715	54320716	rs62143197	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143197-A	0.223	1E-11	(Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2, ASAP2.13518.5.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	SIR2-like protein 2 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62143198-A	0.21	1E-8		0.0811	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	9E-65	(Mitogen-activated protein kinase 1, MAPK1.3115.64.2)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	9E-37	(Ubiquitin carboxyl-terminal hydrolase 8, USP8.13450.49.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	9E-14	(Guanine nucleotide-binding protein G(k) subunit alpha, GNAI3.12650.43.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	9E-14	(Centrin-2, CETN2.13078.3.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	9E-103	(Glucose-6-phosphate isomerase, GPI.4272.46.2)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	8E-97	(Mitogen-activated protein kinase 8, MAPK8.3825.18.2)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	8E-75	(Breast cancer anti-estrogen resistance protein 3, BCAR3.12634.79.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	8E-66	(ADP-ribosylation factor-binding protein GGA3, GGA3.11683.19.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	8E-61	(Double-stranded RNA-binding protein Staufen homolog 2, STAU2.12970.35.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	8E-50	(Macrophage migration inhibitory factor, MIF.5356.2.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	7E-84	(Protein MRVI1, MRVI1.8255.34.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	7E-56	(Eukaryotic translation initiation factor 4E type 2, EIF4E2.9745.20.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	7E-16	(DNA/RNA-binding protein KIN17, KIN.13476.16.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	7E-12	(Cysteine-rich secretory protein 3, CRISP3.3187.52.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	6E-72	(cAMP-regulated phosphoprotein 19, ARPP19.4963.19.1)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	6E-57	(ADP-ribosylation factor-binding protein GGA1, GGA1.13594.158.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	6E-35	(Vesicle transport through interaction with t-SNAREs homolog 1B, VTI1B.8963.8.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	6E-35	(Runt-related transcription factor 3, RUNX3.11138.16.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	6E-135	(Heterogeneous nuclear ribonucleoprotein D-like, HNRNPDL.10852.114.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-68	(Mitogen-activated protein kinase 14, MAPK14.5007.1.1)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-37	(Ubiquilin-4, UBQLN4.12720.71.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-24	(Tumor necrosis factor ligand superfamily member 14, TNFSF14.5355.69.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-131	(Clathrin interactor 1, CLINT1.11659.31.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-120	(beta-adrenergic receptor kinase 1, ADRBK1.3347.9.2)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-116	(5-formyltetrahydrofolate cyclo-ligase, MTHFS.14107.1.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-108	(Peptidyl-prolyl cis-trans isomerase A, PPIA.5247.17.4)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	5E-104	(Toll/interleukin-1 receptor domain-containing adapter protein, TIRAP.9839.148.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-97	(Poly(rC)-binding protein 1, PCBP1.11458.30.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-78	(Lymphocyte antigen 6 complex locus protein G6c, LY6G6C.6256.9.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-68	(Transketolase, TKT.4306.4.2)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-59	(Bis(5'-adenosyl)-triphosphatase, FHIT.9826.135.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-49	(RAC-alpha/beta/gamma serine/threonine-protein kinase, AKT1.AKT2.AKT3.3392.68.2)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-40	(Haloacid dehalogenase-like hydrolase domain-containing protein 2, HDHD2.13472.35.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-32	(Cartilage intermediate layer protein 1, CILP.5717.2.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-20	(Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2, ACAP2.12343.14.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	4E-105	(Mitogen-activated protein kinase 3, MAPK3.2855.49.2)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-98	(SHC-transforming protein 1, SHC1.5272.55.2)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-89	(Ubiquitin-conjugating enzyme E2 D4, UBE2D4.13475.10.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-86	(Fructose-2,6-bisphosphatase TIGAR, TIGAR.12476.50.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-82	(Pro-FMRFamide-related neuropeptide FF, NPFF.5617.41.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-75	(BRICHOS domain-containing protein 5, BRICD5.6612.90.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-74	(Tyrosine-protein kinase CSK, CSK.3363.31.4)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-62	(Selenide, water dikinase 1, SEPHS1.14083.25.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-43	(Signal transducer and activator of transcription 3, STAT3.10346.5.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-152	(DNA-3-methyladenine glycosylase, MPG.12438.127.3)	0.73	[0.67-0.79] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-136	(Arf-GAP domain and FG repeat-containing protein 1, AGFG1.11681.8.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-105	(Death-associated protein kinase 2, DAPK2.4355.13.1)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	3E-103	(Alpha/beta hydrolase domain-containing protein 14A, ABHD14A.5715.4.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-92	(ADP-ribosylation factor GTPase-activating protein 2, ARFGAP2.11664.32.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-89	(ADP-ribosylation factor-like protein 3, ARL3.12571.14.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-70	(Triosephosphate isomerase, TPI1.4309.59.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-65	(ELAV-like protein 1, ELAVL1.11592.1.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-42	(Protein S100-A4, S100A4.14116.129.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-21	(Oxidoreductase HTATIP2, HTATIP2.10630.5.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-113	(Probable RNA-binding protein EIF1AD, EIF1AD.13545.97.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	2E-104	(U1 small nuclear ribonucleoprotein A, SNRPA.12678.66.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-99	(E3 ubiquitin-protein ligase CBL, CBL.12016.60.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-95	(Transforming protein RhoA, RHOA.9855.10.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-95	(Alcohol dehydrogenase [NADP(+)], AKR1A1.4192.10.2)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-90	(High mobility group protein B2, HMGB2.6913.189.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-88	(UPF0696 protein C11orf68, C11orf68.8307.47.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-86	(Calcyclin-binding protein, CACYBP.12432.23.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-71	(Aldehyde dehydrogenase family 3 member B1, ALDH3B1.12940.35.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-69	(Translationally-controlled tumor protein, TPT1.3872.2.1)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-57	(RNA-binding protein 39, RBM39.4284.18.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-48	(Glycogen phosphorylase, liver form, PYGL.11441.11.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-40	(Vesicle-associated membrane protein-associated protein A, VAPA.7167.102.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-27	(Interferon-induced protein with tetratricopeptide repeats 3, IFIT3.13642.90.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-19	(Crk-like protein, CRKL.9877.28.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-134	(RNA-binding protein 3, RBM3.12747.89.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-124	(Regulator of microtubule dynamics protein 1, RMDN1.7096.30.3)	0.67	[0.61-0.73] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-121	(Rho GDP-dissociation inhibitor 2, ARHGDIB.9846.32.3)	0.67	[0.61-0.73] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-12	(Retinoic acid receptor responder protein 3, RARRES3.10961.15.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-12	(Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, PTEN.3831.21.1)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54320938	54320939	rs62143198	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143198-A	0.215	1E-110	(Gamma-interferon-inducible protein 16, IFI16.12893.159.3)	0.64	[0.58-0.7] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.42		rs10424405-G	NR	4E-111		0.0637	[0.058-0.069] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
999	chr19	54321932	54321933	rs10424405	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs10424405-A	0.78	3E-11		0.0702	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54321932	54321933	rs10424405	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs10424405-A	0.78	1E-52		0.1612	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54321932	54321933	rs10424405	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Caspase 8 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs10424405-A	0.78	4E-59		0.2091	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	9E-33	(Serine/threonine-protein kinase MRCK alpha, CDC42BPA.12706.2.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	9E-22	(Non-histone chromosomal protein HMG-14, HMGN1.9187.2.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	8E-19	(Fructose-1,6-bisphosphatase 1, FBP1.7206.20.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	8E-18	(Drebrin-like protein, DBNL.4978.54.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	7E-68	(Cyclin-dependent kinase inhibitor 1B, CDKN1B.3719.2.2)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	6E-66	(Probable dimethyladenosine transferase, DIMT1.12694.28.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	6E-19	(Testis-expressed sequence 29 protein, TEX29.10557.6.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	5E-65	(Chromobox protein homolog 7, CBX7.13027.20.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	5E-50	(Arachidonate 15-lipoxygenase B, ALOX15B.12422.143.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	5E-43	(Ubiquitin, RPS27A.4474.19.2)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	5E-36	(Gamma-interferon-inducible protein 16, IFI16.13940.19.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	4E-62	(NTF2-related export protein 1, NXT1.9942.2.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	4E-42	(Tyrosine-protein phosphatase non-receptor type 9, PTPN9.12633.3.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	4E-18	(p53 and DNA damage-regulated protein 1, PDRG1.12593.33.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	4E-13	(Uncharacterized protein C7orf69, C7orf69.9544.24.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	4E-104	(Probable RNA-binding protein 23, RBM23.11590.5.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	3E-24	(Heme oxygenase 2, HMOX2.2622.18.1)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	3E-17	(Stathmin-4, STMN4.6267.51.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-53	(Thioredoxin reductase 1, cytoplasmic, TXNRD1.13967.14.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-36	(Integrin alpha-I: beta-1 complex, ITGA1.ITGB1.3503.4.2)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-34	(Malignant T-cell-amplified sequence 1, MCTS1.12488.9.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-34	(Histone deacetylase complex subunit SAP18, SAP18.12830.4.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-27	(Histone H1x, H1FX.12709.63.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-24	(Extracellular sulfatase Sulf-2, SULF2.8305.18.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-16	(Keratinocyte differentiation-associated protein, KRTDAP.5739.75.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	2E-14	(Galectin-2, LGALS2.3033.57.1)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-78	(B melanoma antigen 2, BAGE2.6294.11.3)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-16	(Regulatory factor X-associated protein, RFXAP.12726.3.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-15	(Protein FAM150B, FAM150B.6284.7.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-15	(Nucleolin, NCL.13655.34.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-13	(Voltage-gated potassium channel subunit beta-2, KCNAB2.10015.119.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54321932	54321933	rs10424405	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10424405-G	0.22	1E-12	(Sialic acid-binding Ig-like lectin 12, SIGLEC12.8352.26.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54322879	54322880	rs62143199	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62143199-T	0.49	7E-18		0.1326	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54324994	54324995	rs4632248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs4632248-T	0.202101	6E-176				Affymetrix, Illumina [23467995] (imputed)	N
999	chr19	54324994	54324995	rs4632248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.42	NR	rs4632248-T	0.21107	1E-173		0.065178	[0.061-0.07] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	9E-69	(N-acetyl-D-glucosamine kinase, NAGK.3894.15.2)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	9E-142	(High mobility group protein B3, HMGB3.12775.6.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	8E-62	(ADP-ribosylation factor 6, ARF6.12425.104.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	8E-39	(Ubiquitin-like protein ISG15, ISG15.14151.4.3)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	8E-24	(Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3, ST6GALNAC3.10626.116.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	7E-52	(Ubiquitin+1, truncated mutation for UbB, RPS27A.2846.24.2)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	7E-13	(Thrombopoietin Receptor, MPL.3473.78.2)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	6E-56	(Plastin-2, LCP1.9749.190.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	6E-12	(Leucine-rich repeat serine/threonine-protein kinase 2, LRRK2.10990.21.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-83	(Protein S100-A11, S100A11.14011.17.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-50	(Calcium/calmodulin-dependent protein kinase type II subunit alpha, CAMK2A.3350.53.2)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-40	(Lysozyme-like protein 2, LYZL2.6377.54.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-36	(Core-binding factor subunit beta, CBFB.10048.7.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-168	(Bcl10-interacting CARD protein, C9orf89.7778.104.3)	0.75	[0.69-0.81] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-16	(C-type lectin domain family 4 member K, CD207.3361.26.2)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	5E-123	(DnaJ homolog subfamily B member 14, DNAJB14.8053.16.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	4E-89	(N-terminal Xaa-Pro-Lys N-methyltransferase 1, NTMT1.12454.105.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	4E-162	(Small ubiquitin-related modifier 3, SUMO3.9169.14.3)	0.74	[0.68-0.8] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-90	(Y-box-binding protein 2, YBX2.6372.7.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-59	(Bromodomain-containing protein 1, BRD1.11607.15.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-31	(Syntaxin-8, STX8.10903.50.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-26	(Probable ATP-dependent RNA helicase DDX58, DDX58.12382.2.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-12	(Zinc finger protein 18, ZNF18.11372.2.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	3E-12	(Mitochondrial import inner membrane translocase subunit TIM14, DNAJC19.4545.53.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-98	(Switch-associated protein 70, SWAP70.13552.7.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-88	(Ezrin, EZR.9753.17.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-72	(Syntaxin-7, STX7.8274.64.3)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-71	(LEM domain-containing protein 1, LEMD1.8040.9.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-63	(Indoleamine 2,3-dioxygenase 1, IDO1.9759.13.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-57	(Nicotinamide phosphoribosyltransferase, NAMPT.5011.11.1)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-56	(PolyUbiquitin K48-linked, UBB.6651.74.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-13	(Fibroblast growth factor 16, FGF16.13725.3.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-126	(SH3 domain-binding protein 2, SH3BP2.7769.29.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	2E-108	(Lamina-associated polypeptide 2, isoforms beta/gamma, TMPO.8265.225.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-43	(Transformer-2 protein homolog beta, TRA2B.12373.73.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-40	(Protein unc-93 homolog B1, UNC93B1.13487.24.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-29	(1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1, PLCG1.4563.61.2)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-143	(NHP2-like protein 1, NHP2L1.13602.6.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-140	(Gamma-aminobutyric acid receptor-associated protein-like 1, GABARAPL1.12661.44.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-121	(Neutrophil cytosol factor 2, NCF2.10047.12.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54324994	54324995	rs4632248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs4632248-T	0.214	1E-103	(Signal transducer and activator of transcription 6, STAT6.10372.18.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	19q13.42		rs62143206-?	NR	5E-8				Affymetrix [NR] (imputed)	N
999	chr19	54326211	54326212	rs62143206	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	19q13.42		rs62143206-G	0.789	4E-63				Affymetrix [10369434] (imputed)	N
999	chr19	54326211	54326212	rs62143206	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galectin-3 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62143206-T	0.21	1E-19		0.0849	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54326211	54326212	rs62143206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.42	NLRP12	rs62143206-T	0.211202	3E-183		0.07854124	[0.073-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
999	chr19	54326211	54326212	rs62143206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.42	NLRP12	rs62143206-T	0.211228	2E-162		0.07374898	[0.068-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	9E-126	(Inositol 1,4,5-trisphosphate receptor-interacting protein-like 1, ITPRIPL1.9221.6.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	9E-111	(Mitogen-activated protein kinase kinase kinase 3, MAP3K3.12990.39.3)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	9E-103	(Glia maturation factor gamma, GMFG.13062.4.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	8E-174	(SUMO-conjugating enzyme UBC9, UBE2I.2877.3.1)	0.76	[0.7-0.82] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	7E-81	(Glutathione S-transferase P, GSTP1.4911.49.2)	0.54	[0.48-0.6] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	7E-61	(Enhancer of rudimentary homolog, ERH.11614.29.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	7E-244	(Annexin A2, ANXA2.13700.10.3)	0.87	[0.81-0.93] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	7E-180	(Small ubiquitin-related modifier 3, SUMO3.14623.26.3)	0.77	[0.71-0.83] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	7E-135	(Heterogeneous nuclear ribonucleoproteins A2/B1, HNRNPA2B1.5351.52.3)	0.68	[0.62-0.74] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	6E-239	(Annexin A2, ANXA2.4961.17.1)	0.86	[0.8-0.92] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	6E-120	(Structural maintenance of chromosomes protein 3, SMC3.14324.52.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	6E-100	(Heterogeneous nuclear ribonucleoprotein M, HNRNPM.12783.29.3)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	5E-87	(Calcium/calmodulin-dependent protein kinase type II subunit beta, CAMK2B.3351.1.1)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	5E-69	(Interleukin-16, IL16.2774.10.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	5E-36	(Mineralocorticoid receptor, NR3C2.12931.16.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-98	(Serine/arginine-rich splicing factor 7, SRSF7.12987.12.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-78	(Protein NDRG4, NDRG4.7934.11.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-46	(ETS domain-containing protein Elk-1, ELK1.10006.25.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-34	(Rho GDP-dissociation inhibitor 1, ARHGDIA.6454.38.3)	0.36	[0.3-0.42] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-136	(Protein S100-A12, S100A12.5852.6.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-114	(Heterogeneous nuclear ribonucleoprotein A/B, HNRNPAB.4450.26.2)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	4E-106	(RNA-binding protein EWS, EWSR1.12988.49.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-90	(Hexokinase-2, HK2.13130.150.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-68	(Copine-1, CPNE1.5346.24.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-171	(Retinoid-binding protein 7, RBP7.14208.3.3)	0.75	[0.69-0.81] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-150	(Pulmonary surfactant-associated protein D, SFTPD.4414.69.2)	0.71	[0.65-0.77] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-121	(Rho GTPase-activating protein 25, ARHGAP25.11333.82.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-116	(Allograft inflammatory factor 1, AIF1.2849.49.1)	0.64	[0.58-0.7] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-108	(Serine/threonine-protein kinase 17B, STK17B.5249.31.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	3E-105	(RNA polymerase II subunit A C-terminal domain phosphatase SSU72, SSU72.13566.2.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-76	(Protein S100-A6, S100A6.13090.17.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-75	(60S ribosomal protein L30, RPL30.12478.15.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-59	(Chymotrypsin-like protease CTRL-1, CTRL.9229.9.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-42	(Vacuolar protein sorting-associated protein 4B, VPS4B.12668.7.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-41	(Cofilin-1, CFL1.4203.50.2)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-28	(Sperm-associated antigen 11A, SPAG11A.5726.49.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-25	(Polycomb protein SCMH1, SCMH1.12604.16.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-22	(Ragulator complex protein LAMTOR3, LAMTOR3.12490.92.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-22	(Alpha-(1,3)-fucosyltransferase 9, FUT9.6991.24.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-145	(Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, PIN4.12718.43.3)	0.71	[0.65-0.77] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-140	(DNA-(apurinic or apyrimidinic site) lyase, APEX1.9849.13.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-14	(Galectin-2, LGALS2.3033.57.1)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-136	(Endothelial differentiation-related factor 1, EDF1.12415.122.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-132	(High mobility group protein B1, HMGB1.2524.56.3)	0.68	[0.62-0.74] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-13	(Transforming growth factor beta-3, TGFB3.3520.58.1)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-124	(40S ribosomal protein S4, X isoform, RPS4X.9758.17.3)	0.66	[0.6-0.72] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-121	(Spliceosome RNA helicase DDX39B, DDX39B.9742.59.3)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-12	(Beta-defensin 128, DEFB128.6360.7.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-110	(Interferon regulatory factor 2, IRF2.12801.33.3)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	2E-103	(Annexin A1, ANXA1.4960.72.1)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-53	(Acylphosphatase-2, ACYP2.12812.25.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-31	(NAD kinase, NADK.13624.17.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-18	(Cyclin-dependent kinase 8:Cyclin-C complex, CDK8.CCNC.3359.11.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-170	(40S ribosomal protein S7, RPS7.3864.5.2)	0.75	[0.69-0.81] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-139	(Stathmin-2, STMN2.10900.272.3)	0.69	[0.63-0.75] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-121	(Mitogen-activated protein kinase 13, MAPK13.5006.71.1)	0.65	[0.59-0.71] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-103	(Programmed cell death protein 5, PDCD5.12517.52.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.213	1E-100	(Tyrosine-protein kinase Lck, LCK.4560.34.2)	0.6	[0.54-0.66] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54326211	54326212	rs62143206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.2106	5E-80		0.08287849	[0.074-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
999	chr19	54326211	54326212	rs62143206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	19q13.42	NLRP12	rs62143206-T	0.2106	2E-61		0.07251879	[0.064-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	8E-28	(GDP-fucose protein O-fucosyltransferase 1, POFUT1.5634.39.3)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	7E-14	(Protein-tyrosine sulfotransferase 2, TPST2.8024.64.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	5E-12	(UPF0454 protein C12orf49, C12orf49.9387.13.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	4E-42	(CUB and sushi domain-containing protein 2, CSMD2.9971.5.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	3E-68	(Copine-1, CPNE1.5346.24.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	3E-16	(Interleukin-7 receptor subunit alpha, IL7R.5089.11.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	2E-59	(Contactin-5, CNTN5.3299.29.2)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	2E-58	(Eukaryotic initiation factor 4A-III, EIF4A3.4997.19.1)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	2E-53	(40S ribosomal protein SA, RPSA.4957.1.2)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	2E-25	(Thymocyte nuclear protein 1, THYN1.12424.107.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	1E-95	(Protein S100-A9, S100A9.5339.49.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	1E-75	(Grancalcin, GCA.12594.5.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327312	54327313	rs34436714	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs34436714-A	0.213	1E-146	(Coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial, CHCHD10.11270.17.3)	0.71	[0.65-0.77] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	19q13.42		rs10418046-T	0.787	1E-58				Affymetrix [10369434] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-67	(Ubiquitin-fold modifier-conjugating enzyme 1, UFC1.3405.6.2)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-62	(COMM domain-containing protein 7, COMMD7.2823.7.1)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-26	(Tyrosine-protein phosphatase non-receptor type 11, PTPN11.3397.7.4)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-15	(Semaphorin-3B, SEMA3B.5667.3.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-13	(Beta-mannosidase, MANBA.6382.17.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	8E-12	(Myotonin-protein kinase, DMPK.9010.3.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	7E-61	(Signal-regulatory protein beta-2, SIRPB2.5669.26.3)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	7E-43	(RAC-alpha/beta/gamma serine/threonine-protein kinase, AKT1.AKT2.AKT3.2867.52.2)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	7E-28	(Ena/VASP-like protein, EVL.11656.110.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	7E-22	(Caspase-3, CASP3.3593.72.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	7E-20	(Glycylpeptide N-tetradecanoyltransferase 1, NMT1.5196.7.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	6E-27	(Rap1 GTPase-activating protein 1, RAP1GAP.13735.1.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-68	(Adenylosuccinate synthetase isozyme 2, ADSS.12644.63.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-49	(Mothers against decapentaplegic homolog 4, SMAD4.12022.12.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-32	(Phosducin-like protein 2, PDCL2.14192.31.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-31	(Nischarin, NISCH.12738.43.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-29	(Eukaryotic translation initiation factor 5, EIF5.2612.5.2)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-24	(Ras-related protein Rab-14, RAB14.14283.12.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	5E-22	(Cytochrome c oxidase subunit 6C, COX6C.8903.1.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	4E-27	(cAMP-dependent protein kinase type I-beta regulatory subunit, PRKAR1B.12479.50.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	4E-21	(Kynurenine--oxoglutarate transaminase 3, CCBL2.12682.5.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	4E-15	(Acyl-CoA-binding domain-containing protein 7, ACBD7.13563.259.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-95	(Nuclear RNA export factor 1, NXF1.12453.161.3)	0.58	[0.52-0.64] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-42	(Ribonucleoside-diphosphate reductase subunit M2 B, RRM2B.8925.25.3)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-36	(Normal mucosa of esophagus-specific gene 1 protein, NMES1.6406.3.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-23	(Toll-interacting protein, TOLLIP.13963.7.3)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-17	(Integral membrane protein 2A, ITM2A.7765.15.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-13	(Prefoldin subunit 5, PFDN5.4271.75.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-13	(NmrA-like family domain-containing protein 1, NMRAL1.13988.67.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	3E-12	(Follistatin-related protein 4, FSTL4.9350.3.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-68	(Activator of 90 kDa heat shock protein ATPase homolog 1, AHSA1.11633.89.3)	0.5	[0.44-0.56] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-64	(L-lactate dehydrogenase B chain, LDHB.3890.8.2)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-62	(Pyridoxal kinase, PDXK.11098.1.3)	0.48	[0.42-0.54] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-53	(N-acetyltransferase 14, NAT14.11120.49.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-29	(Nucleoside diphosphate kinase B, NME2.4249.64.2)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-26	(Ribulose-phosphate 3-epimerase, RPE.12646.2.3)	0.31	[0.25-0.37] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-24	(Transmembrane protein 230, TMEM230.11542.11.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-24	(Nesprin-2, SYNE2.9789.52.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-20	(Heterogeneous nuclear ribonucleoprotein Q, SYNCRIP.4224.7.2)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-16	(Alpha-taxilin, TXLNA.9065.28.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-14	(Protein FAM107A, FAM107A.2760.2.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-14	(Proteasome activator complex subunit 1, PSME1.5918.5.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-14	(AP-4 complex subunit mu-1, AP4M1.10076.1.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-110	(Sialic acid-binding Ig-like lectin 11, SIGLEC11.8913.22.3)	0.62	[0.56-0.68] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	2E-105	(Maspardin, SPG21.11122.97.3)	0.61	[0.55-0.67] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-58	(Protein deglycase DJ-1, PARK7.5016.61.2)	0.47	[0.41-0.53] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-57	(Mitotic checkpoint serine/threonine-protein kinase BUB1, BUB1.12033.3.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-45	(Nuclear migration protein nudC, NUDC.8887.21.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-40	(Ubiquitin-fold modifier 1, UFM1.3836.51.2)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-28	(Ski-like protein, SKIL.14670.1.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-27	(Heparan sulfate glucosamine 3-O-sulfotransferase 3A1, HS3ST3A1.8268.98.3)	0.32	[0.26-0.38] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-22	(cAMP-dependent protein kinase catalytic subunit alpha, PRKACA.3466.8.2)	0.29	[0.23-0.35] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-14	(Urea transporter 2, SLC14A2.12818.159.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-14	(A disintegrin and metalloproteinase with thrombospondin motifs 4, ADAMTS4.2809.25.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.217	1E-12	(Secreted and transmembrane protein 1, SECTM1.13093.6.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
999	chr19	54327868	54327869	rs10418046	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	19q13.42	NLRP12	rs10418046-G	0.2129	5E-63		0.07329325	[0.065-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
999	chr19	54330407	54330407	rs143190635	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs143190635-CT	0.14	9E-15		0.1145	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54330407	54330407	rs143190635	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cystatin-B levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs143190635-CT	0.13	3E-8		0.0866	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54332356	54332361	rs141270935	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141270935-T	0.09	9E-22	(Indoleamine 2,3-dioxygenase 1, IDO1.9759.13.3)	0.43	[0.35-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332356	54332361	rs141270935	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141270935-T	0.09	5E-24	(Bcl10-interacting CARD protein, C9orf89.7778.104.3)	0.45	[0.37-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332356	54332361	rs141270935	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141270935-T	0.09	3E-26	(Annexin A2, ANXA2.4961.17.1)	0.47	[0.39-0.55] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332356	54332361	rs141270935	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141270935-T	0.09	1E-20	(Switch-associated protein 70, SWAP70.13552.7.3)	0.41	[0.33-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332571	54332572	rs141498524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141498524-G	0.095	8E-24	(Pulmonary surfactant-associated protein D, SFTPD.4414.69.2)	0.43	[0.35-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332571	54332572	rs141498524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141498524-G	0.095	5E-24	(Hexokinase-2, HK2.13130.150.3)	0.43	[0.35-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54332571	54332572	rs141498524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs141498524-G	0.095	3E-23	(Death-associated protein kinase 2, DAPK2.4355.13.1)	0.42	[0.34-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54334879	54334880	rs62143212	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cystatin-B levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62143212-A	0.76	4E-26		0.133	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54336150	54336151	rs139295665	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	19q13.42	NLRP12	rs139295665-A	0.01	3E-6		17.046	[9.95-24.14] unit decrease	Illumina [NR] (imputed)	N
999	chr19	54337998	54337999	rs12972028	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972028-G	0.728	6E-18	(MAP kinase-activated protein kinase 3, MAPKAPK3.3822.54.2)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338066	54338067	rs12972849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972849-A	0.632	9E-69	(Endothelial differentiation-related factor 1, EDF1.12415.122.3)	0.51	[0.45-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338066	54338067	rs12972849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972849-A	0.632	5E-107	(Annexin A2, ANXA2.13700.10.3)	0.62	[0.56-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338066	54338067	rs12972849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972849-A	0.632	5E-104	(Annexin A2, ANXA2.4961.17.1)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338066	54338067	rs12972849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972849-A	0.632	4E-77	(Bcl10-interacting CARD protein, C9orf89.7778.104.3)	0.54	[0.48-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338066	54338067	rs12972849	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NLRP12	rs12972849-A	0.632	1E-12	(N-acetylserotonin O-methyltransferase-like protein, ASMTL.10089.7.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54338106	54338107	rs12972476	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs12972476-A	0.51	7E-10		0.0918	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54338205	54338205	rs200279226	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs200279226-T	0.61	2E-25		0.1563	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54339133	54339134	rs142927863	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pro-interleukin-16 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs142927863-A	0.68	1E-11		0.1022	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54339332	54339332	rs371426388	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs371426388-CT	0.6	4E-6		0.0757	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
999	chr19	54339332	54339332	rs371426388	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs371426388-CT	0.61	2E-81	(40S ribosomal protein S7, RPS7.3864.5.2)	0.53	[0.47-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54339332	54339332	rs371426388	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs371426388-CT	0.61	1E-72	(High mobility group protein B3, HMGB3.12775.6.3)	0.5	[0.44-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
999	chr19	54350138	54350139	rs34447393	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	19q13.42	intergenic	rs34447393-T	0.0829	8E-6		0.83519	NR	Affymetrix, Illumina [30341632] (imputed)	N
999	chr19	54364167	54364168	rs62143248	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	19q13.42	NR	rs62143248-T	NR	2E-6	(Hispanic)	4.72	[6.63-2.81] unit decrease	Affymetrix [14000000] (imputed)	N
999	chr19	54367596	54367597	rs8103771	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	19q13.42	intergenic	rs8103771-?	NR	2E-6		0.741	[0.35-1.13] unit increase	Illumina [at least 13000000] (imputed)	N
999	chr19	54372467	54372468	rs116837676	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	19q13.42		rs116837676-A	0.011	7E-8		2.42	[1.76-3.34]	Illumina [9962324] (imputed)	N
1000	chr19	54441199	54441200	rs678916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q13.42	Intergenic	rs678916-T	0.1744	3E-9	(MTAG)	0.0182	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1000	chr19	54441199	54441200	rs678916	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.42	NR	rs678916-?	NR	3E-6		4.683	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1000	chr19	54441789	54441790	rs307914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.42	Intergenic	rs307914-A	0.8354	4E-12	(MTAG)	0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1000	chr19	54441789	54441790	rs307914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q13.42	Intergenic	rs307914-G	0.1646	1E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1000	chr19	54443050	54443051	rs307913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q13.42	Intergenic	rs307913-A	0.8516	6E-12	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1000	chr19	54443050	54443051	rs307913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.42	Intergenic	rs307913-A	0.8522	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1001	chr19	54551114	54551115	rs10415777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OSCAR	5,365 Icelandic ancestry individuals	NA	19q13.42		rs10415777-G	0.4441	3E-15		0.14765	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1001	chr19	54554949	54554950	rs4442925	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	OSCAR	rs4442925-T	0.455	1E-8	(OSCAR, 8702_42_3)	0.13819851	[0.091-0.186] unit increase	Illumina [> 1000000] (imputed)	N
1001	chr19	54567857	54567858	rs12981718	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	19q13.42	VSTM1	rs12981718-A	0.071553425	2E-7		1.3595927	[1.210609031-1.52691111]	Illumina [10439017] (imputed)	N
1001	chr19	54604821	54604822	rs10423754	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA		OSCAR	rs10423754-?	NR	9E-6				Affymetrix, Illumina [~ 1300000]	N
1001	chr19	54611282	54611283	rs77147173	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	19q13.42	NR	rs77147173-C		7E-6		0.1503	[0.085-0.216] SD units increase	NR [10700000] (imputed)	N
1001	chr19	54612627	54612628	rs254262	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254262-T	NR	7E-13		0.0668	[0.049-0.085] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54612627	54612628	rs254262	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254262-G	NR	7E-13		0.0757	[0.055-0.096] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54612627	54612628	rs254262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	TFPT	rs254262-A	0.468	8E-6	(Weight z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1001	chr19	54612627	54612628	rs254262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	TFPT	rs254262-A	0.468	8E-6	(Energy storage )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1001	chr19	54612627	54612628	rs254262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	TFPT	rs254262-A	0.468	3E-6	(Weight change )	0.03	[NR] kg/y increase	Illumina [899892]	N
1001	chr19	54619190	54619191	rs4806711	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.42	NR	rs4806711-G	NR	2E-16		0.0249	[0.019-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1001	chr19	54628939	54628940	rs254274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254274-G	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54628939	54628940	rs254274	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254274-A	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54630756	54630757	rs254271	29650774	Rotroff DM	2018-04-12	Diabetes	Genetic Variants in CPA6 and PRPF31 are Associated with Variation in Response to Metformin in Individuals with Type 2 Diabetes.	Change in HbA1c levels in response to metformin treatment in type 2 diabetes	845 European ancestry individuals, 222 African American individuals, 245 individuals	6,963 European ancestry individuals, 1,015 African American individuals, 4,520 individuals	19q13.42	PRPF31	rs254271-?	NR	4E-7	(EA)			Affymetrix, Illumina [26000000] (imputed)	N
1001	chr19	54631377	54631378	rs171703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs171703-T	NR	4E-22		0.1141	[0.091-0.137] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54631377	54631378	rs171703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs171703-T	NR	4E-22		0.1214	[0.097-0.146] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54632351	54632352	rs608608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs608608-G	NR	6E-11		0.0374	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54632351	54632352	rs608608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs608608-A	NR	6E-11		0.0702	[0.049-0.091] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54632422	54632423	rs655240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs655240-G	NR	1E-10		0.0468	[0.032-0.061] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54632422	54632423	rs655240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs655240-T	NR	1E-10		0.1062	[0.074-0.139] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54639867	54639868	rs4806716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806716-G	NR	2E-10		0.0732869	[0.051-0.096] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54639867	54639868	rs4806716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806716-G	NR	4E-11		0.0817211	[0.058-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54639867	54639868	rs4806716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806716-G	NR	2E-11		0.2191	[0.16-0.28] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54639867	54639868	rs4806716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806716-A	NR	2E-11		0.1127	[0.08-0.145] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	9E-24		0.110373	[0.089-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	5E-22		0.0944017	[0.075-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	2E-31		0.122048	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	9E-18		0.114988	[0.089-0.141] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	7E-26		0.115506	[0.094-0.137] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	3E-11		0.0700075	[0.049-0.091] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-G	NR	4E-12		0.0499	[0.036-0.064] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-T	NR	4E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-T	NR	4E-12		0.0414	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-T	NR	4E-12		0.0377	[0.027-0.048] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-A	NR	4E-12		0.0925	[0.066-0.119] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36643-G	NR	4E-12		0.0412	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	4E-21		0.071	[0.056-0.086] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54640479	54640480	rs36643	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36643-C	NR	1E-14		0.0634799	[0.047-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54640794	54640795	rs36642	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36642-A	NR	4E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54640794	54640795	rs36642	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36642-C	NR	4E-12		0.0423	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54641387	54641388	rs40168	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40168-A	NR	1E-11		0.0546	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54641387	54641388	rs40168	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40168-C	NR	1E-11		0.0744	[0.053-0.096] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54643386	54643387	rs36641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36641-T	NR	4E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54643386	54643387	rs36641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36641-A	NR	4E-12		0.0411	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54643386	54643387	rs36641	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36641-C	NR	4E-12		0.0801	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-T	NR	3E-12		0.0769	[0.055-0.099] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-T	NR	4E-12		0.068	[0.049-0.087] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-T	NR	3E-12		0.0291	[0.021-0.037] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-T	NR	3E-12		0.0523	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-G	NR	3E-12		0.0897	[0.064-0.115] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644287	54644288	rs36639	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36639-T	NR	4E-12		0.0997	[0.072-0.128] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-G	NR	3E-12		0.0617	[0.044-0.079] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-C	NR	3E-12		0.0656	[0.047-0.084] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-T	NR	3E-12		0.094	[0.068-0.12] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-C	NR	3E-12		0.0617	[0.044-0.079] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-A	NR	3E-12		0.1517	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644493	54644494	rs36638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36638-T	NR	3E-12		0.0799	[0.057-0.102] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-T	NR	3E-12		0.0497	[0.036-0.064] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-A	NR	3E-12		0.0409	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-G	NR	3E-12		0.0652	[0.047-0.084] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-A	NR	3E-12		0.0631	[0.045-0.081] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-T	NR	3E-12		0.0903	[0.065-0.116] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644549	54644550	rs36637	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36637-A	NR	3E-12		0.164	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-G	NR	3E-12		0.0804	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-C	NR	3E-12		0.042	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-C	NR	3E-12		0.0939	[0.067-0.12] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-G	NR	3E-12		0.0643	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-C	NR	3E-12		0.0652	[0.047-0.084] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-T	NR	3E-12		0.0877	[0.063-0.112] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54644878	54644879	rs36636	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36636-C	NR	3E-12		0.076	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	4E-12		0.0830224	[0.06-0.106] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	3E-15		0.0843593	[0.063-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	3E-18		0.0993513	[0.077-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	4E-10		0.0915096	[0.063-0.12] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	2E-16		0.0982634	[0.075-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36635-T	NR	3E-12		0.0523	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54645149	54645150	rs36635	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36635-G	NR	4E-15		0.064214	[0.048-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-A	NR	3E-12		0.0298	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-A	NR	3E-12		0.0642	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-C	NR	3E-12		0.2356	[0.17-0.3] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-G	NR	3E-12		0.0637	[0.046-0.082] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-G	NR	3E-12		0.0415	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54645820	54645821	rs36634	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36634-G	NR	3E-12		0.0694	[0.05-0.089] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	4E-30		0.123543	[0.1-0.14] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	7E-31		0.111546	[0.093-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	2E-14		0.0807704	[0.06-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	8E-41		0.137929	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	4E-24		0.133857	[0.11-0.16] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	2E-32		0.128413	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	2E-14		0.0793712	[0.059-0.1] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-G	NR	3E-12		0.0415	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-G	NR	3E-12		0.0805	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-C	NR	3E-12		0.0293	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-A	NR	3E-12		0.184	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-G	NR	3E-12		0.0414	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36633-A	NR	3E-12		0.0378	[0.027-0.048] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	3E-32		0.0876416	[0.073-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54646289	54646290	rs36633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36633-C	NR	1E-20		0.0754627	[0.06-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54650939	54650940	rs36664	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36664-C	NR	4E-12		0.0427	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54651332	54651333	rs36663	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36663-C	NR	4E-12		0.0674	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54651332	54651333	rs36663	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36663-T	NR	4E-12		0.0531	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54651332	54651333	rs36663	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36663-T	NR	4E-12		0.0708	[0.051-0.091] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54651344	54651345	rs42319	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs42319-A	NR	1E-11		0.0629	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54651344	54651345	rs42319	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs42319-C	NR	1E-11		0.0554	[0.04-0.071] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54651344	54651345	rs42319	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs42319-G	NR	1E-11		0.0731	[0.052-0.094] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54653571	54653572	rs36661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36661-G	NR	4E-12		0.1557	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54654778	54654779	rs36660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36660-A	NR	4E-12		0.0855	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	2E-12		0.0775469	[0.056-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	2E-10		0.0620298	[0.043-0.081] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	6E-15		0.0813582	[0.061-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	4E-13		0.0973432	[0.071-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	1E-11		0.0741505	[0.053-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654902	54654903	rs12973609	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs12973609-A	NR	2E-11		0.050582	[0.036-0.065] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	1E-14		0.130759	[0.097-0.164] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	8E-17		0.134718	[0.1-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	5E-11		0.133169	[0.094-0.173] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	2E-13		0.12536	[0.092-0.159] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	8E-12		0.0793441	[0.057-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs73062673-C	NR	4E-14		0.0956524	[0.071-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54654979	54654980	rs73062673	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	19q13.42	CNOT3	rs73062673-C	0.09	5E-8		3.73	[2.33-5.98]	Illumina [NR]	N
1001	chr19	54655268	54655269	rs36659	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36659-G	NR	4E-12		0.0749	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
1001	chr19	54655268	54655269	rs36659	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36659-C	NR	4E-12		0.1755	[0.13-0.23] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54655268	54655269	rs36659	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36659-T	NR	4E-12		0.0789	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	8E-13		0.0785267	[0.057-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	3E-10		0.0616979	[0.043-0.081] unit increase	Affymetrix [87696910] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	3E-15		0.0826318	[0.062-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	6E-13		0.0969349	[0.071-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	1E-11		0.0741043	[0.053-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
1001	chr19	54655646	54655647	rs2241790	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs2241790-T	NR	3E-11		0.0499374	[0.035-0.065] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	1E-11		0.0813337	[0.058-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	2E-17		0.0913927	[0.07-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	3E-18		0.100002	[0.078-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	2E-10		0.0934905	[0.065-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	3E-16		0.0985862	[0.075-0.122] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54657068	54657069	rs42318	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs42318-T	NR	9E-15		0.063966	[0.048-0.08] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54658101	54658102	rs11606	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.42		rs11606-?	NR	5E-8		0.0113514	[0.0073-0.0154] unit increase	NR [6912294] (imputed)	N
1002	chr19	54658101	54658102	rs11606	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	19q13.42		rs11606-C	0.574838	2E-8		0.011	[0.0071-0.0149] unit increase	NR [7250403] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	9E-19		0.0954172	[0.074-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	7E-30		0.109111	[0.09-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	3E-14		0.0799545	[0.059-0.101] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	2E-28		0.113411	[0.093-0.134] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	7E-16		0.106071	[0.08-0.132] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	4E-23		0.106895	[0.086-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	8E-25		0.0759264	[0.061-0.09] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664208	54664209	rs36657	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36657-G	NR	2E-17		0.0685359	[0.053-0.084] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	3E-23		0.106999	[0.086-0.128] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	4E-38		0.123671	[0.1-0.14] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	6E-18		0.0907375	[0.07-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	4E-37		0.130373	[0.11-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	4E-21		0.123575	[0.098-0.149] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	6E-31		0.12452	[0.1-0.15] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	4E-12		0.0715462	[0.051-0.092] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	7E-32		0.0865714	[0.072-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54664751	54664752	rs36656	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs36656-C	NR	2E-19		0.0725961	[0.057-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54666536	54666537	rs9636146	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	19q13.42	LENG1, TMC4	rs9636146-A	0.063	2E-16		0.4	[0.3-0.49] unit decrease	Affymetrix [339439]	N
1002	chr19	54672548	54672549	rs563028852	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.42	NA	rs563028852-T	0.728905	3E-63		0.00470039	[0.0041-0.0053] unit decrease	Affymetrix [13995440] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-G	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-C	NR	3E-10		0.1045	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-C	NR	3E-10		0.0407	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-G	NR	3E-10		0.0643	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-C	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-A	NR	3E-10		0.0613	[0.042-0.08] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-A	NR	3E-10		0.1046	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-A	NR	3E-10		0.0485	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-A	NR	3E-10		0.0634	[0.044-0.083] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674348	54674349	rs73062684	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs73062684-C	NR	3E-10		0.0505	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-T	NR	2E-31		0.1393	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-C	NR	2E-31		0.0845	[0.07-0.099] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-C	NR	2E-31		0.0856	[0.071-0.1] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-C	NR	2E-31		0.1009	[0.084-0.118] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-A	NR	1E-31		0.0834	[0.069-0.097] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-T	NR	2E-31		0.101	[0.084-0.118] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-T	NR	1E-31		0.1629	[0.14-0.19] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-G	NR	2E-31		0.1433	[0.12-0.17] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-A	NR	2E-31		0.0664	[0.055-0.078] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674420	54674421	rs11084313	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11084313-G	NR	2E-31		0.0756	[0.063-0.088] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674477	54674478	rs73062686	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.42	TMC4	rs73062686-G	0.886603	3E-59		0.00597479	[0.0053-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-41		0.146775	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	6E-46		0.137935	[0.12-0.16] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-20		0.0986691	[0.078-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	4E-59		0.167875	[0.15-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	6E-32		0.156051	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	7E-50		0.161533	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-19		0.093735	[0.073-0.114] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-C	NR	2E-11		0.0704	[0.05-0.091] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-G	NR	2E-11		0.1128	[0.08-0.146] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-A	NR	2E-11		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-C	NR	2E-11		0.0658	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-11		0.0812	[0.058-0.105] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-A	NR	2E-11		0.0591	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-11		0.1105	[0.078-0.143] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-C	NR	2E-11		0.0279	[0.02-0.036] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-G	NR	2E-11		0.0548	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-C	NR	2E-11		0.0388	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-C	NR	2E-11		0.0648	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs4806498-A	NR	2E-11		0.0575	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	3E-46		0.106464	[0.092-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54674741	54674742	rs4806498	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs4806498-T	NR	2E-25		0.0846878	[0.069-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-G	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0675	[0.056-0.079] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0863	[0.071-0.102] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.1236	[0.1-0.15] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0602	[0.05-0.071] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0684	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-G	NR	1E-28		0.0686	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-C	NR	1E-28		0.0729	[0.06-0.086] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-G	NR	1E-28		0.0686	[0.056-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-G	NR	1E-28		0.0856	[0.071-0.101] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs11668882-A	NR	1E-28		0.0675	[0.056-0.079] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.42	TMC4	rs11668882-C	0.439805	6E-23		0.02244976	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr19	54675096	54675097	rs11668882	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.42	TMC4	rs11668882-C	0.439777	1E-18		0.019992383	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	7E-18		0.14567	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	9E-21		0.140967	[0.11-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	5E-11		0.108519	[0.076-0.141] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	2E-24		0.164041	[0.13-0.2] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	1E-16		0.173375	[0.13-0.21] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	1E-19		0.153064	[0.12-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	4E-10		0.101525	[0.07-0.133] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-G	NR	4E-10		0.0339	[0.023-0.044] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-A	NR	4E-10		0.0559	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-C	NR	4E-10		0.104	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-T	NR	4E-10		0.043	[0.029-0.057] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-G	NR	4E-10		0.0865	[0.059-0.114] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-T	NR	4E-10		0.0714	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-A	NR	4E-10		0.104	[0.071-0.137] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-T	NR	4E-10		0.0733	[0.05-0.096] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-A	NR	4E-10		0.0784	[0.054-0.103] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs77215230-A	NR	4E-10		0.0584	[0.04-0.077] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	1E-20		0.108085	[0.085-0.131] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs77215230-A	NR	7E-15		0.0987682	[0.074-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.42	NR	rs77215230-A	NR	1E-47		0.0542	[0.047-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54675642	54675643	rs77215230	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	19q13.42	TMC4	rs77215230-?		3E-10		0.0542	[0.037-0.071] unit decrease	Illumina [31500000] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	19q13.42		rs2576452-C	0.568006	4E-8		0.0222363	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	19q13.42		rs2576452-C	0.568006	2E-8		0.0224976	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	19q13.42		rs2576452-C	0.568006	5E-9		0.02347	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-A	NR	7E-13		0.039	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-G	NR	7E-13		0.1866	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-G	NR	7E-13		0.1869	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-A	NR	7E-13		0.0431	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-A	NR	7E-13		0.0871	[0.063-0.111] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-C	NR	7E-13		0.0476	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-A	NR	7E-13		0.0767	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-T	NR	7E-13		0.1866	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-A	NR	7E-13		0.0395	[0.029-0.05] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-G	NR	7E-13		0.1869	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-T	NR	7E-13		0.1869	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs2576452-G	NR	7E-13		0.1869	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	19q13.42	MBOAT7	rs2576452-T	NR	7E-7		0.2321	[0.14-0.32] unit increase	Illumina [9377111] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.42		rs2576452-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1002	chr19	54676432	54676433	rs2576452	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	19q13.42	MBOAT7	rs2576452-T	0.44	2E-29	(arachidonate (20:4n6)/1-arachidonoylglycerophosphoinositol)	0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1002	chr19	54676762	54676763	rs641738	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	19q13.42		rs641738-C	0.560627	2E-8		0.0223846	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.42		rs641738-T	NR	1E-17		0.0173	[0.013-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-G	NR	1E-10		0.0477	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-A	NR	1E-10		0.0475	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-T	NR	1E-10		0.0387	[0.027-0.05] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-A	NR	1E-10		0.0563	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-T	NR	1E-10		0.0595	[0.041-0.078] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-G	NR	1E-10		0.1699	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-A	NR	1E-10		0.0479	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-A	NR	1E-10		0.1606	[0.11-0.21] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-T	NR	1E-10		0.0563	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-C	NR	1E-10		0.1322	[0.092-0.172] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-G	NR	1E-10		0.062	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs641738-T	NR	1E-10		0.0514	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54676762	54676763	rs641738	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	19q13.42		rs641738-C	0.559	2E-11				Affymetrix [10369434] (imputed)	N
1002	chr19	54676762	54676763	rs641738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	TMC4	rs641738-C	0.621116	2E-21	(1-stearoyl-2-linoleoyl-GPI (18:0/18:2))	0.22	[0.17-0.27] unit decrease	Illumina [13039987] (imputed)	N
1002	chr19	54676762	54676763	rs641738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	TMC4	rs641738-C	0.621116	2E-14	(1-linoleoyl-GPI (18:2)*)	0.179	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1002	chr19	54676762	54676763	rs641738	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	TMC4	rs641738-C	0.621116	2E-13	(1-stearoyl-2-oleoyl-GPI (18:0/18:1)*)	0.17	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
1002	chr19	54676762	54676763	rs641738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs641738-T	0.388452	7E-22				Affymetrix, Illumina [24588908] (imputed)	N
1002	chr19	54676762	54676763	rs641738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.42	NR	rs641738-T	0.438688	3E-23		0.019413	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1002	chr19	54676814	54676814	rs34564463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	19q13.42	TMC4	rs34564463-GC	0.440473	5E-9		0.013040613	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr19	54676814	54676814	rs34564463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	19q13.42	TMC4	rs34564463-GC	0.440462	1E-9		0.013547377	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-T	NR	1E-10		0.0728	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-G	NR	1E-10		0.0682	[0.048-0.089] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-A	NR	1E-10		0.0326	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-C	NR	1E-10		0.1042	[0.073-0.136] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-C	NR	1E-10		0.0566	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-A	NR	1E-10		0.0699	[0.049-0.091] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-T	NR	1E-10		0.0658	[0.046-0.086] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-A	NR	1E-10		0.0809	[0.056-0.105] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-G	NR	1E-10		0.0728	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-C	NR	1E-10		0.0711	[0.05-0.093] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-G	NR	1E-10		0.0552	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs626283-G	NR	1E-10		0.0516	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677000	54677001	rs626283	26482880	Buch S	2015-10-19	Nat Genet	A genome-wide association study confirms PNPLA3 and identifies TM6SF2 and MBOAT7 as risk loci for alcohol-related cirrhosis.	Cirrhosis (alcohol related)	712 European ancestry cases, 1,426 European ancestry alchocol dependent controls	1,148 European ancestry cases, 922 European ancestry alchocol dependent controls	19q13.42	MBOAT7	rs626283-C	0.44	1E-9		1.35	[1.23-1.49]	Illumina [6770425] (imputed)	N
1002	chr19	54677102	54677103	rs653560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs653560-G	NR	4E-13		0.0825976	[0.06-0.105] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677102	54677103	rs653560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs653560-G	NR	5E-15		0.094947	[0.071-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677102	54677103	rs653560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs653560-G	NR	6E-13		0.09184	[0.067-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677102	54677103	rs653560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs653560-G	NR	2E-11		0.0583759	[0.041-0.075] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677102	54677103	rs653560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.42	NR	rs653560-C	NR	9E-18		0.0244	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_40:6_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	6E-18		0.144005	[0.11-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_38:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	9E-23		0.14587	[0.12-0.17] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	1E-11		0.110258	[0.078-0.142] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	5E-24		0.160292	[0.13-0.19] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	2E-17		0.175539	[0.14-0.22] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	9E-20		0.151687	[0.12-0.18] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	2E-10		0.101211	[0.07-0.132] unit increase	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-G	NR	1E-36		0.0887	[0.075-0.102] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-G	NR	1E-36		0.1537	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-A	NR	1E-36		0.1041	[0.088-0.12] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-C	NR	2E-36		0.1546	[0.13-0.18] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-G	NR	1E-36		0.1726	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-C	NR	1E-36		0.108	[0.091-0.125] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-A	NR	1E-36		0.0862	[0.073-0.1] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-C	NR	1E-36		0.0862	[0.073-0.1] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-G	NR	1E-36		0.0944	[0.08-0.109] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1050527-T	NR	2E-36		0.1611	[0.14-0.19] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:4_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	6E-22		0.11026	[0.088-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677166	54677167	rs1050527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	19q13.42		rs1050527-T	NR	4E-15		0.0980527	[0.074-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.42		rs8736-T	NR	4E-92		0.0429	[0.039-0.047] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-A	NR	6E-10		0.1014	[0.069-0.133] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-A	NR	6E-10		0.0284	[0.019-0.037] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-G	NR	6E-10		0.0709	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-T	NR	6E-10		0.0818	[0.056-0.108] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-A	NR	6E-10		0.0779	[0.053-0.103] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-T	NR	6E-10		0.0971	[0.066-0.128] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-A	NR	6E-10		0.0669	[0.046-0.088] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-T	NR	6E-10		0.063	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-G	NR	6E-10		0.0494	[0.034-0.065] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(32:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-G	NR	6E-10		0.0818	[0.056-0.108] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-G	NR	6E-10		0.0776	[0.053-0.102] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs8736-A	NR	6E-10		0.0493	[0.034-0.065] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677188	54677189	rs8736	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.42	MBOAT7	rs8736-C	0.562378	8E-137		0.00571671	[0.0053-0.0062] unit decrease	Affymetrix [13995440] (imputed)	N
1002	chr19	54677188	54677189	rs8736	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		19q13.42	TMC4, MBOAT7	rs8736-C	NR	7E-10		0.00887	[0.0048-0.013] nmol/l decrease	NR [19000000] (imputed)	N
1002	chr19	54677188	54677189	rs8736	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.42	MBOAT7	rs8736-T	0.44	2E-73		18.1	z-score increase	Affymetrix [4311822] (imputed)	N
1002	chr19	54677188	54677189	rs8736	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	MBOAT7	rs8736-C	0.623909	6E-13	(1-palmitoyl-2-oleoyl-GPI (16:0/18:1)*)	0.168	[0.12-0.21] unit decrease	Illumina [13039987] (imputed)	N
1002	chr19	54677188	54677189	rs8736	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	MBOAT7	rs8736-C	0.623909	1E-13	(1-palmitoyl-2-linoleoyl-GPI (16:0/18:2))	0.173	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1002	chr19	54677188	54677189	rs8736	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	19q13.42	TMC4	rs8736-T	0.416	8E-16		0.03	[0.03-0.04] unit increase	Illumina [NR] (imputed)	N
1002	chr19	54677188	54677189	rs8736	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	19q13.42	MBOAT7	rs8736-T	NR	6E-16	(PI(18:0;0-20:3;0))	0.2808	[0.21-0.35] unit decrease	Illumina [~ 9300000] (imputed)	N
1002	chr19	54677188	54677189	rs8736	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	19q13.42	MBOAT7	rs8736-T	NR	1E-9	(PI(18:0;0-18:2;0))	0.2064	[0.14-0.27] unit increase	Illumina [~ 9300000] (imputed)	N
1002	chr19	54677188	54677189	rs8736	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	19q13.42	MBOAT7	rs8736-T	NR	1E-27	(PI(18:0;0-20:4;0))	0.3757	[0.31-0.44] unit decrease	Illumina [~ 9300000] (imputed)	N
1002	chr19	54677188	54677189	rs8736	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	19q13.42	MBOAT7	rs8736-T	0.44	8E-18	(1-arachidonoylglycerophosphoinositol)	0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-G	NR	7E-37		0.1761	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-T	NR	8E-37		0.0661	[0.056-0.076] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-T	NR	7E-37		0.1762	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-G	NR	1E-36		0.1368	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-T	NR	5E-37		0.1761	[0.15-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(35:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-A	NR	8E-37		0.0976	[0.083-0.113] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-G	NR	7E-37		0.0808	[0.068-0.093] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-C	NR	8E-37		0.137	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-G	NR	8E-37		0.0661	[0.056-0.076] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54677896	54677897	rs10416555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(40:5)_[M+OAc]1-/Phosphatidylglycerol(39:5)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs10416555-T	NR	8E-37		0.1384	[0.12-0.16] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs40167-A	NR	5E-13		0.0871676	[0.064-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs40167-A	NR	5E-12		0.0875918	[0.063-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40167-A	NR	1E-11		0.0777	[0.055-0.1] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40167-C	NR	1E-11		0.1484	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40167-T	NR	1E-11		0.0756	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54682974	54682975	rs40167	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40167-T	NR	1E-11		0.0352	[0.025-0.045] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54689322	54689323	rs254281	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254281-C	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54689322	54689323	rs254281	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254281-A	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54689322	54689323	rs254281	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254281-C	NR	7E-13		0.187	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54689322	54689323	rs254281	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs254281-C	NR	7E-13		0.0435	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691224	54691225	rs1865961	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1865961-G	NR	1E-13		0.0542	[0.04-0.069] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691224	54691225	rs1865961	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1865961-G	NR	1E-13		0.0714	[0.053-0.09] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691224	54691225	rs1865961	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1865961-G	NR	1E-13		0.0826	[0.061-0.104] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691224	54691225	rs1865961	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs1865961-T	NR	1E-13		0.0651	[0.048-0.082] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691413	54691414	rs36631	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36631-G	NR	3E-12		0.0415	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691413	54691414	rs36631	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36631-A	NR	3E-12		0.0657	[0.047-0.084] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691413	54691414	rs36631	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36631-T	NR	3E-12		0.0518	[0.037-0.066] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691413	54691414	rs36631	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36631-G	NR	3E-12		0.0243	[0.017-0.031] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691726	54691727	rs36629	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36629-C	NR	3E-12		0.0699	[0.05-0.089] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691726	54691727	rs36629	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36629-T	NR	3E-12		0.0236	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691726	54691727	rs36629	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36629-A	NR	3E-12		0.0484	[0.035-0.062] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691726	54691727	rs36629	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36629-A	NR	3E-12		0.1172	[0.084-0.15] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691726	54691727	rs36629	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	LILRA6	rs36629-A	0.61484375	1E-29	(LILRA6, 7059_14_3)	0.286196	[0.24-0.34] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54691757	54691758	rs36628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36628-T	NR	3E-12		0.1019	[0.073-0.131] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691757	54691758	rs36628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36628-G	NR	3E-12		0.0721	[0.052-0.092] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691757	54691758	rs36628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36628-G	NR	3E-12		0.0658	[0.047-0.084] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691757	54691758	rs36628	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36628-T	NR	3E-12		0.0414	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691776	54691777	rs36627	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36627-A	NR	3E-12		0.0757	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691776	54691777	rs36627	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36627-C	NR	3E-12		0.0501	[0.036-0.064] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691776	54691777	rs36627	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36627-C	NR	3E-12		0.0757	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691776	54691777	rs36627	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36627-A	NR	3E-12		0.0806	[0.058-0.103] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691978	54691979	rs36626	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36626-T	NR	3E-12		0.0938	[0.068-0.12] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691978	54691979	rs36626	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36626-A	NR	3E-12		0.0782	[0.056-0.1] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54691978	54691979	rs36626	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36626-C	NR	3E-12		0.0795	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54691978	54691979	rs36626	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36626-C	NR	3E-12		0.0658	[0.047-0.084] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54692522	54692523	rs36625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs36625-G	NR	4E-10		0.0669969	[0.046-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
1002	chr19	54692522	54692523	rs36625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36625-G	NR	3E-12		0.0529	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54692522	54692523	rs36625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36625-C	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54692522	54692523	rs36625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36625-A	NR	3E-12		0.0791	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54692522	54692523	rs36625	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36625-A	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54692522	54692523	rs36625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.42	NR	rs36625-A	NR	5E-22		0.0232	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54693441	54693442	rs6509849	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.42	NR	rs6509849-A	NR	5E-10		0.0309	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1002	chr19	54693526	54693527	rs40357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40357-A	NR	1E-11		0.0418	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693526	54693527	rs40357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40357-C	NR	1E-11		0.0414	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693526	54693527	rs40357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40357-C	NR	1E-11		0.0723	[0.052-0.093] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693526	54693527	rs40357	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs40357-T	NR	1E-11		0.1244	[0.089-0.16] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693553	54693554	rs183716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs183716-T	NR	1E-13		0.0495	[0.037-0.062] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54693553	54693554	rs183716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs183716-C	NR	1E-13		0.0768	[0.057-0.097] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693553	54693554	rs183716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs183716-G	NR	1E-13		0.1289	[0.095-0.163] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54693553	54693554	rs183716	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs183716-G	NR	1E-13		0.0545	[0.04-0.069] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54693681	54693682	rs39714	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs39714-G	NR	9E-12		0.1573	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693681	54693682	rs39714	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs39714-A	NR	1E-11		0.0566	[0.04-0.073] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54693681	54693682	rs39714	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs39714-T	NR	9E-12		0.1573	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54693681	54693682	rs39714	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs39714-T	NR	9E-12		0.0323	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54694549	54694550	rs36623	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36623-A	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54694549	54694550	rs36623	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36623-A	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54694549	54694550	rs36623	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36623-A	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54694549	54694550	rs36623	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36623-G	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54695162	54695163	rs593073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs593073-C	NR	4E-11		0.0304	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54695162	54695163	rs593073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs593073-T	NR	4E-11		0.0548	[0.039-0.071] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54695162	54695163	rs593073	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs593073-A	NR	4E-11		0.0557	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54696487	54696488	rs635608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs635608-T	NR	1E-10		0.0625	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54696487	54696488	rs635608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs635608-C	NR	1E-10		0.0601	[0.042-0.078] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54696487	54696488	rs635608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs635608-T	NR	1E-10		0.0554	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54696487	54696488	rs635608	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs635608-G	NR	1E-10		0.0792	[0.055-0.103] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697078	54697079	rs7595	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs7595-T	NR	3E-10		0.1054	[0.072-0.138] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54697078	54697079	rs7595	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs7595-G	NR	3E-10		0.0501	[0.034-0.066] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697078	54697079	rs7595	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs7595-T	NR	3E-10		0.0724	[0.05-0.095] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697078	54697079	rs7595	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs7595-G	NR	3E-10		0.04	[0.027-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697078	54697079	rs7595	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.42	TSEN34, MBOAT7	rs7595-G	0.389	3E-8	(Height change )	0.05	[NR] cm/y increase	Illumina [899892]	N
1002	chr19	54697601	54697602	rs36622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36622-T	NR	3E-12		0.0778	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697601	54697602	rs36622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(38:4)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36622-A	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697601	54697602	rs36622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36622-C	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697601	54697602	rs36622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36622-G	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697713	54697714	rs36621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(40:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36621-T	NR	3E-12		0.0416	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
1002	chr19	54697713	54697714	rs36621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(36:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36621-T	NR	3E-12		0.0946	[0.068-0.121] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54697713	54697714	rs36621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol(34:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	19q13.42		rs36621-G	NR	3E-12		0.0946	[0.068-0.121] unit increase	Illumina [6720657] (imputed)	N
1002	chr19	54699966	54699967	rs148442614	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	19q13.42	NR	rs148442614-T	0.01147	3E-6		0.67	[0.39-0.95] unit decrease	Illumina [10677593] (imputed)	N
1002	chr19	54701845	54701846	rs34629529	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	19q13.42	RPS9	rs34629529-A	0.308	1E-6		1.567	[1.308-1.877]	Illumina [4495750] (imputed)	N
1002	chr19	54701845	54701846	rs34629529	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	19q13.42	RPS9	rs34629529-A	NR	1E-6		1.567	NR	Illumina [up to 4495750] (imputed)	N
1002	chr19	54706843	54706844	rs112312277	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs112312277-T	0.071	4E-47	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	0.72	[0.62-0.82] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr19	54707247	54707248	rs12980600	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	19q13.42	RPS9, LILRB3	rs12980600-?	NR	2E-8		1.6666665	[NR]	Illumina [up to 547389]	N
1002	chr19	54711980	54711981	rs11666543	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	19q13.42	RPS9, LILRB3	rs11666543-?	0.7	4E-8	(Turkish)	1.7857143	[1.45-2.22]	Illumina [up to 547389]	N
1002	chr19	54715341	54715342	rs145888232	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA6	5,368 Icelandic ancestry individuals	NA	19q13.42		rs145888232-T	0.01742	1E-79		1.33378	[1.2-1.47] unit increase	Illumina [7506463] (imputed)	N
1002	chr19	54723354	54723355	rs255774	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	19q13.42	NR	rs255774-A	0.46	1E-8		0.019	[0.013-0.025] z score increase	Affymetrix [up to 10400000] (imputed)	N
1002	chr19	54723545	54723546	rs255773	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.42	LILRB3, RPS9	rs255773-C	0.536208	1E-11		0.018193	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1002	chr19	54725514	54725515	rs369824	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.42	LILRB3	rs369824-T	0.298239	3E-10		0.018244425	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr19	54734001	54734002	rs113651912	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA6	5,368 Icelandic ancestry individuals	NA	19q13.42		rs113651912-C	0.1203	6E-23		0.291829	[0.23-0.35] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54739967	54739968	rs4555268	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs4555268-T	0.294	1E-51	(Leukocyte immunoglobulin-like receptor subfamily B member 5, LILRB5.7015.8.3)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54744140	54744141	rs11670934	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs11670934-G	0.035	1E-118	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	1.68	[1.54-1.82] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr19	54748736	54748737	rs35361042	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRA6	rs35361042-G	0.091	2E-278	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	1.34	[1.26-1.42] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr19	54749155	54749156	rs73053487	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs73053487-C	0.027	1E-13	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	0.62	[0.46-0.78] unit increase	Affymetrix [10572788] (imputed)	N
1002	chr19	54751064	54751065	rs406231	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA6	5,368 Icelandic ancestry individuals	NA	19q13.42		rs406231-G	0.3029	3E-44		0.286328	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54752623	54752624	rs429539	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs429539-C	0.713	2E-174	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	0.72	[0.66-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54753201	54753202	rs62133135	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA6	5,368 Icelandic ancestry individuals	NA	19q13.42		rs62133135-C	0.4077	4E-53		0.293506	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54753201	54753202	rs62133135	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-7 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs62133135-T	0.61	1E-10		0.0575	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1002	chr19	54753542	54753543	rs2361797	25214527	Dube MP	2014-09-11	Circ Cardiovasc Genet	CKM and LILRB5 are associated with serum levels of creatine kinase.	Creatine kinase levels in statin users	3,412 European ancestry individuals	3,389 European ancestry individuals	19q13.42	LILRB5	rs2361797-T	0.443	2E-10		0.08	[0.055-0.105] unit increase	Illumina [3232779] (imputed)	N
1002	chr19	54753892	54753897	rs142765183	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs142765183-A	0.835	6E-65	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	0.56	[0.5-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54754102	54754103	rs11668189	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs11668189-A	0.36	8E-11		0.0532	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1002	chr19	54754384	54754385	rs2361796	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB5	5,368 Icelandic ancestry individuals	NA	19q13.42		rs2361796-G	0.3506	8E-240		0.605627	[0.57-0.64] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54754384	54754385	rs2361796	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	19q13.42	LILRB5	rs2361796-?	NR	5E-46		0.0806	[0.07-0.092] unit decrease novel	Illumina [6108953] (imputed)	N
1002	chr19	54754945	54754946	rs637515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	19q13.42		rs637515-A	NR	1E-12		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1002	chr19	54755132	54755133	rs12986064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	19q13.42		rs12986064-C	0.212266	2E-8		0.0386121	[0.025-0.052] unit decrease	Illumina [13465896] (imputed)	N
1002	chr19	54755132	54755133	rs12986064	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.42	LILRB5	rs12986064-T	0.4889	4E-14		0.0148	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1002	chr19	54755132	54755133	rs12986064	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs12986064-C	0.517	2E-803	(Leukocyte immunoglobulin-like receptor subfamily B member 5, LILRB5.7015.8.3)	1.07	[1.03-1.11] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54755921	54755922	rs12977062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.42		rs12977062-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1002	chr19	54755922	54755923	rs12976868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.42		rs12976868-G	NR	2E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1002	chr19	54756141	54756142	rs72087	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	19q13.42	NR	rs72087-C	NR	3E-11		0.0174	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1002	chr19	54756154	54756155	rs45446093	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	19q13.42	NR	rs45446093-C	NR	1E-16		0.0263	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1002	chr19	54759101	54759102	rs393600	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in statin users	6,266 Icelandic ancestry individuals	NA	19q13.42		rs393600-?	NR	2E-6		0.082	unit increase	Illumina [28300000] (imputed)	N
1002	chr19	54759101	54759102	rs393600	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	19q13.42		rs393600-?	NR	8E-7		0.075	unit increase	Illumina [28300000] (imputed)	N
1002	chr19	54759101	54759102	rs393600	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in statin users	5,207 Icelandic ancestry individuals	NA	19q13.42		rs393600-?	NA	9E-10		0.113	unit increase	Illumina [28300000] (imputed)	N
1002	chr19	54759101	54759102	rs393600	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	19q13.42		rs393600-?	NR	8E-11		0.099	unit increase	Illumina [28300000] (imputed)	N
1002	chr19	54759101	54759102	rs393600	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.42		rs393600-G	0.2517	1E-33		0.079	unit increase	Illumina [28300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	19q13.42		rs12975366-T	0.600576	2E-8		0.0235355	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNRD1	5,366 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4153	2E-16		0.158782	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LDHB	5,362 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4153	4E-20		0.177601	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GDI2	5,359 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4153	9E-13		0.134064	[0.097-0.171] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EGFLAM	5,365 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4153	1E-13		0.143255	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	19q13.42		rs12975366-C	NR	2E-33		0.0282	[0.024-0.033] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-12 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs12975366-T	0.6	3E-16		0.0727	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Kallikrein-6 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs12975366-T	0.61	1E-10		0.0581	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRB5	rs12975366-C	0.405	3E-1276	(Leukocyte immunoglobulin-like receptor subfamily B member 5, LILRB5.7015.8.3)	1.16	[1.12-1.2] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	19q13.42		rs12975366-?	NR	2E-8		0.075	unit decrease	Illumina [28300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4162	7E-51		0.074	unit decrease	Illumina [28300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in statin users	5,207 Icelandic ancestry individuals	NA	19q13.42		rs12975366-?	NA	2E-10		0.104	unit decrease	Illumina [28300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	19q13.42		rs12975366-?	NR	9E-15		0.104	unit decrease	Illumina [28300000] (imputed)	N
1002	chr19	54759360	54759361	rs12975366	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Creatine kinase levels	63,159 Icelandic ancestry individuals	NA	19q13.42		rs12975366-C	0.4162	7E-44		0.08	unit decrease	Illumina [28300000] (imputed)	N
1002	chr19	54759570	54759571	rs380731	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA3	5,364 Icelandic ancestry individuals	NA	19q13.42		rs380731-T	0.2411	2E-56		0.344741	[0.3-0.39] unit increase	Illumina [7506463] (imputed)	N
1002	chr19	54759570	54759571	rs380731	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.42	LILRB5	rs380731-T	0.27	3E-11		6.66	z-score increase	Affymetrix [4314223] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	19q13.42		rs10405357-T	0.561072	4E-10		0.025475	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	19q13.42		rs10405357-T	0.561072	3E-8		0.0229218	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REXO2	5,361 Icelandic ancestry individuals	NA	19q13.42		rs10405357-C	0.4482	4E-16		0.152109	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MDH1	5,355 Icelandic ancestry individuals	NA	19q13.42		rs10405357-C	0.4482	5E-15		0.144217	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLK7	5,350 Icelandic ancestry individuals	NA	19q13.42		rs10405357-C	0.4482	3E-14		0.141189	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	8E-11	(MDH1, 3853_56_1)	0.16988467	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	6E-28	(LILRA6, 7059_14_3)	0.28305367	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	5E-10	(TXNRD1, 13967_14_3)	0.15930237	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	3E-53	(LILRB2, 5633_65_3)	0.38950804	[0.34-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	3E-433	(LILRB5, 7015_8_3)	0.9940305	[0.96-1.03] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	3E-15	(LDHB, 3890_8_2)	0.20464495	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	2E-15	(LILRB2, 5091_28_3)	0.20537466	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs10405357-T	0.513125	1E-11	(REXO2, 13590_1_3)	0.17657803	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1002	chr19	54759665	54759666	rs10405357	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRB5	rs10405357-C	0.442	7E-13	(Kallikrein-7, KLK7.3378.49.2)	0.18	[0.14-0.22] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54762407	54762408	rs6509859	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB5	5,368 Icelandic ancestry individuals	NA	19q13.42		rs6509859-T	0.2595	1E-247		0.666593	[0.63-0.71] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54762708	54762709	rs73055413	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA6	5,368 Icelandic ancestry individuals	NA	19q13.42		rs73055413-G	0.1859	3E-59		0.393503	[0.35-0.44] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54763968	54763969	rs595872	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB2	5,354 Icelandic ancestry individuals	NA	19q13.42		rs595872-A	0.2514	2E-171		0.54809	[0.51-0.59] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54763968	54763969	rs595872	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	19q13.42	LILRB5, LILRB2	rs595872-?	NR	4E-8		0.02677	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1002	chr19	54766844	54766845	rs62651713	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs62651713-A	0.26	2E-73	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5091.28.3)	0.55	[0.49-0.61] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54773031	54773032	rs62133140	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	19q13.42	NR	rs62133140-T	NR	5E-6		0.087	[0.05-0.124] unit decrease	Illumina [6319684] (imputed)	N
1002	chr19	54774492	54774493	rs11670986	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	19q13.42	NR	rs11670986-?	NR	5E-23		0.1636	[0.13-0.2] unit decrease novel	Illumina [6108953] (imputed)	N
1002	chr19	54779388	54779389	rs443874	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.42	LILRA6	rs443874-T	0.149	5E-6		0.015	unit decrease	Illumina [NR] (imputed)	N
1002	chr19	54781508	54781509	rs1808548	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB2	5,364 Icelandic ancestry individuals	NA	19q13.42		rs1808548-C	0.3719	6E-95		0.38948	[0.35-0.43] unit decrease	Illumina [7506463] (imputed)	N
1002	chr19	54781540	54781541	rs450937	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.42	LILRA6	rs450937-T	0.125	1E-6		0.018	unit decrease	Illumina [NR] (imputed)	N
1002	chr19	54781553	54781554	rs451000	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.42	LILRA6	rs451000-T	0.124	1E-6		0.018	unit decrease	Illumina [NR] (imputed)	N
1002	chr19	54781556	54781557	rs400942	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs400942-C	0.132	5E-61	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5633.65.3)	0.62	[0.54-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54781556	54781557	rs400942	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs400942-C	0.132	1E-349	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5091.28.3)	1.28	[1.22-1.34] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54781556	54781557	rs400942	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.42	LILRA6	rs400942-T	0.875	1E-6		0.018	unit increase	Illumina [NR] (imputed)	N
1002	chr19	54782918	54782919	rs386056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	19q13.42	NR	rs386056-T	NR	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54782918	54782919	rs386056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.42	NR	rs386056-T	NR	6E-31		0.0361	[0.03-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54782918	54782919	rs386056	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.42	NR	rs386056-T	NR	3E-25		0.0325	[0.026-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1002	chr19	54782918	54782919	rs386056	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRB2	rs386056-T	0.201	5E-530	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5091.28.3)	1.15	[1.11-1.19] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54783374	54783375	rs373032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB2	5,354 Icelandic ancestry individuals	NA	19q13.42		rs373032-T	0.2214	2E-203		0.618678	[0.58-0.66] unit increase	Illumina [7506463] (imputed)	N
1002	chr19	54783374	54783375	rs373032	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19q13.42	LILRB2	rs373032-?	NR	2E-8		0.006286	[0.0034-0.0092] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1002	chr19	54783374	54783375	rs373032	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	LILRB2	rs373032-A	0.7778125	8E-117	(LILRB2, 5633_65_3)	0.65094244	[0.6-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
1002	chr19	54783374	54783375	rs373032	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRB2	rs373032-A	0.792	8E-146	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5633.65.3)	0.72	[0.66-0.78] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54783692	54783693	rs73055442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs73055442-T	0.031	2E-37	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5633.65.3)	0.91	[0.77-1.05] unit decrease	Affymetrix [10572788] (imputed)	N
1002	chr19	54784919	54784920	rs448083	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	19q13.42	LILRB2	rs448083-C	0.2304	8E-6		1.355	NR	Illumina [at least 870261] (imputed)	N
1002	chr19	54786021	54786022	rs4112253	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA5	5,366 Icelandic ancestry individuals	NA	19q13.42		rs4112253-C	0.3288	2E-23		0.201131	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1003	chr19	54790482	54790483	rs377556	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs377556-T	0.203	1E-75	(Leukocyte immunoglobulin-like receptor subfamily B member 2, LILRB2.5633.65.3)	0.54	[0.48-0.6] unit decrease	Affymetrix [10572788] (imputed)	N
1003	chr19	54792078	54792079	rs431420	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB2	5,354 Icelandic ancestry individuals	NA	19q13.42		rs431420-T	0.2165	2E-154		0.553681	[0.51-0.59] unit decrease	Illumina [7506463] (imputed)	N
1003	chr19	54792078	54792079	rs431420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.42		rs431420-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1003	chr19	54792760	54792761	rs386000	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19q13.42		rs386000-C	0.278	4E-20		0.013	[0.01-0.016] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1003	chr19	54792760	54792761	rs386000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs386000-G	NR	1E-24		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54792760	54792761	rs386000	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs386000-G	0.795	1E-24	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54792760	54792761	rs386000	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	19q13.42	LILRA3	rs386000-C	0.26	3E-23		0.048	[NR] unit increase	NR [NR] (imputed)	N
1003	chr19	54792760	54792761	rs386000	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	19q13.42	LILRA3, LILRB2	rs386000-C	0.2	4E-16		0.83	[0.61-1.05] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	5E-21	(LILRA5, 7787_25_3)	0.27197647	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	4E-21	(LILRA5, 8766_29_3)	0.26872727	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	2E-171	(LILRB2, 5091_28_3)	0.77484536	[0.72-0.83] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	2E-12	(DEFB119, 13455_10_3)	0.20471883	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	1E-70	(LILRB2, 5633_65_3)	0.50862896	[0.45-0.56] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793037	54793038	rs398217	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs398217-A	0.773125	1E-568	(LILRA3, 6391_52_3)	1.2433133	[1.2-1.28] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	6E-71	(LILRB2, 5633_65_3)	0.5096325	[0.45-0.56] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	6E-21	(LILRA5, 7787_25_3)	0.2714486	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	4E-21	(LILRA5, 8766_29_3)	0.26876968	[0.21-0.32] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	2E-12	(DEFB119, 13455_10_3)	0.20396818	[0.15-0.26] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	1E-566	(LILRA3, 6391_52_3)	1.2418237	[1.2-1.28] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793279	54793280	rs56883673	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs56883673-T	0.77296875	1E-171	(LILRB2, 5091_28_3)	0.7752355	[0.72-0.83] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54793504	54793505	rs399657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	19q13.42	NR	rs399657-G	0.225294	2E-12		0.015648	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1003	chr19	54793829	54793830	rs798893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.42	AC010518.3	rs798893-C	0.220966	5E-16		0.02174548	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr19	54793829	54793830	rs798893	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs798893-G	NR	8E-30		0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54793829	54793830	rs798893	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs798893-G	0.807	2E-25	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54796629	54796630	rs416867	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	19q13.42		rs416867-G	0.776819	3E-12		0.0347071	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54796629	54796630	rs416867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19q13.42		rs416867-A	NR	3E-13		0.0202	[0.015-0.026] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1003	chr19	54796629	54796630	rs416867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs416867-G	0.783455	2E-12				Affymetrix, Illumina [22063850] (imputed)	N
1003	chr19	54797847	54797848	rs103294	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	19q13.42		rs103294-C	0.77695	2E-12		0.0349845	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54797847	54797848	rs103294	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	19q13.42	LILRB2	rs103294-?	NR	6E-27		0.0129	[0.01-0.015] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1003	chr19	54797847	54797848	rs103294	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	19q13.42	LILRB2	rs103294-?	NR	9E-22		0.01177	[0.0093-0.0142] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1003	chr19	54797847	54797848	rs103294	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	19q13.42	NR	rs103294-?	NR	6E-8		0.7751508	[0.5-1.05] unit increase	Illumina [31978362] (imputed)	N
1003	chr19	54797847	54797848	rs103294	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	19q13.42		rs103294-T	0.2331	2E-24		0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1003	chr19	54797847	54797848	rs103294	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	19q13.42	LILR3A	rs103294-T	0.75	3E-8		1.53	[1.31-1.77]	Illumina [5878075] (imputed)	N
1003	chr19	54797847	54797848	rs103294	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs103294-C	NR	9E-30		0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54797847	54797848	rs103294	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs103294-C	0.803	3E-25	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54797847	54797848	rs103294	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	19q13.42	LILRA3	rs103294-T	0.186	5E-30	(Trans-ethnic initial)	0.0523	[0.044-0.061] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1003	chr19	54797847	54797848	rs103294	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	AC010518.3, AC010518.2, AC008984.5, AC008984.7	rs103294-T	0.1889447	2E-73	(Leukocyte immunoglobulin-like receptor subfamily B member 2)	0.9426	[0.85-1.04] unit decrease	Affymetrix [509946]	N
1003	chr19	54797847	54797848	rs103294	23023329	Xu J	2012-09-30	Nat Genet	Genome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.	Prostate cancer	1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls	19q13.42	LILRA3	rs103294-C	0.238	5E-16		1.28	[1.21-1.36]	Illumina [587294]	N
1003	chr19	54799082	54799083	rs380267	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs380267-A	0.78	5E-37		0.1261	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1003	chr19	54799082	54799083	rs380267	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	19q13.42	NR	rs380267-A	0.7885	8E-38				Affymetrix, Illumina [at least 2500000] (imputed)	N
1003	chr19	54799082	54799083	rs380267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.42		rs380267-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1003	chr19	54799082	54799083	rs380267	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.42	intergenic	rs380267-A	0.805	4E-71		0.0622	[0.055-0.069] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1003	chr19	54799674	54799675	rs539365473	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs539365473-T	0.018	2E-52	(Leukocyte immunoglobulin-like receptor subfamily A member 6, LILRA6.7059.14.3)	1.48	[1.28-1.68] unit increase	Affymetrix [10572788] (imputed)	N
1003	chr19	54800370	54800371	rs410852	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	19q13.42	LILRA3	rs410852-G	NR	4E-6		1.47	[NR]	Illumina [up to 547389]	N
1003	chr19	54800499	54800500	rs367070	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	19q13.42		rs367070-A	0.774816	4E-9		0.0290574	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54800499	54800500	rs367070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB119	5,366 Icelandic ancestry individuals	NA	19q13.42		rs367070-G	0.2319	5E-23		0.222371	[0.18-0.27] unit decrease	Illumina [7506463] (imputed)	N
1003	chr19	54800499	54800500	rs367070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	19q13.42		rs367070-G	NR	1E-58		0.0407	[0.036-0.046] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1003	chr19	54800499	54800500	rs367070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.42	LILRA3	rs367070-A	0.77443	1E-74		0.0417967	[0.037-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	19q13.42	LILRA3	rs367070-A	0.774619	1E-61		0.0390569	[0.034-0.044] unit decrease	Affymetrix [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.42	LILRA3	rs367070-G	NR	4E-55				Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	19q13.42	LILRA3	rs367070-G	NR	3E-48	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.42	LILRA3	rs367070-G	NR	7E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.42	LILRA3	rs367070-G	NR	2E-55	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	19q13.42	LILRA3	rs367070-G	NR	1E-64				Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.42	LILRA3	rs367070-G	NR	7E-29		0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	19q13.42	LILRA3	rs367070-G	NR	4E-22	(EA)	0.014	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.42	LILRA3	rs367070-G	NR	5E-17		0.01061	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800499	54800500	rs367070	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	19q13.42	LILRA3	rs367070-G	NR	1E-10	(EA)	0.01302	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1003	chr19	54800741	54800742	rs798898	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.42	LILRA3	rs798898-T	0.30511	2E-9		0.015082779	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr19	54800741	54800742	rs798898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.42	NR	rs798898-T	0.306951	2E-11		0.015081	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1003	chr19	54808173	54808174	rs1645788	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs1645788-G	0.240922	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
1003	chr19	54809342	54809343	rs453755	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	19q13.42	LILRA3	rs453755-G	0.248	3E-8		0.073526785	[0.047-0.1] mg/dl increase	Illumina [24111857] (imputed)	N
1003	chr19	54810672	54810672	rs542478950	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA			rs542478950-C	0.576527	9E-9		0.0240327	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54810672	54810672	rs542478950	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA			rs542478950-C	0.576527	4E-9		0.0241373	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54810672	54810672	rs542478950	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA			rs542478950-C	0.576527	2E-10		0.0265208	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	3E-9		0.0235978	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	7E-20		0.0382346	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	2E-13		0.0314446	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	1E-12		0.0280799	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	5E-8		0.0213986	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	4E-8		0.0215071	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	4E-9		0.0227297	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	4E-10		0.0266573	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	19q13.42		rs431001-G	0.674135	5E-10		0.0265745	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54813265	54813266	rs431001	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA5	5,366 Icelandic ancestry individuals	NA	19q13.42		rs431001-A	0.2998	2E-99		0.421917	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	8E-345	(LILRA3, 6391_52_3)	0.96902764	[0.93-1.01] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	7E-25	(LILRB2, 5633_65_3)	0.27956986	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	5E-61	(LILRB2, 5091_28_3)	0.44347456	[0.39-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	5E-56	(LILRA5, 7787_25_3)	0.41974542	[0.37-0.47] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	4E-9	(DEFB119, 13455_10_3)	0.15909855	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814413	54814414	rs8109267	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109267-G	0.7121875	1E-59	(LILRA5, 8766_29_3)	0.42755	[0.38-0.48] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	8E-345	(LILRA3, 6391_52_3)	0.96902764	[0.93-1.01] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	7E-25	(LILRB2, 5633_65_3)	0.27956986	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	5E-61	(LILRB2, 5091_28_3)	0.44347456	[0.39-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	5E-56	(LILRA5, 7787_25_3)	0.41974542	[0.37-0.47] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	4E-9	(DEFB119, 13455_10_3)	0.15909855	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814428	54814429	rs8109873	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NR	rs8109873-T	0.7121875	1E-59	(LILRA5, 8766_29_3)	0.42755	[0.38-0.48] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	5E-12		0.0286965	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	7E-13		0.0297241	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	2E-10		0.0278194	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	5E-12		0.0281228	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	6E-14		0.0297466	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	6E-12		0.028784	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	2E-11		0.0272623	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54814523	54814524	rs1761457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	19q13.42		rs1761457-A	0.673282	5E-11		0.0264622	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54815092	54815093	rs741584	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA5	5,361 Icelandic ancestry individuals	NA	19q13.42		rs741584-C	0.2995	3E-104		0.42099	[0.38-0.46] unit decrease	Illumina [7506463] (imputed)	N
1003	chr19	54815386	54815387	rs1645787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.42		rs1645787-A	0.673348	9E-13		0.0299904	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54815386	54815387	rs1645787	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	19q13.42		rs1645787-A	0.673348	4E-10		0.0258545	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54815576	54815577	rs759819	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	19q13.42		rs759819-T	0.673263	5E-10		0.0242994	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54815576	54815577	rs759819	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	19q13.42		rs759819-T	0.673263	4E-9		0.0228701	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54815576	54815577	rs759819	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	19q13.42	LILRA3, LILRA5, LILRB2, MIR4752	rs759819-?		6E-12				NR [NR]	N
1003	chr19	54815576	54815577	rs759819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRA5	rs759819-C	0.33	3E-22	(Leukocyte immunoglobulin-like receptor subfamily A member 5, LILRA5.8766.29.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1003	chr19	54815576	54815577	rs759819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRA5	rs759819-C	0.33	3E-111	(Leukocyte immunoglobulin-like receptor subfamily A member 5, LILRA5.7787.25.3)	0.54	[0.5-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
1003	chr19	54815576	54815577	rs759819	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs759819-T	NR	6E-18		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54815576	54815577	rs759819	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.42	NR	rs759819-T	0.688	3E-15	(EA)	0.036	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1003	chr19	54815576	54815577	rs759819	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	19q13.42	LILRA3, LILRA5	rs759819-C	0.33	6E-13		0.046	[0.034-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1003	chr19	54818034	54818035	rs1761450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.42	NR	rs1761450-A	NR	4E-16		0.0333	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr19	54818034	54818035	rs1761450	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.42	NR	rs1761450-A	NR	4E-14		0.031	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr19	54819465	54819466	rs1616661	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	19q13.42		rs1616661-T	0.681877	2E-8		0.0222839	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1003	chr19	54825173	54825174	rs1761461	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	19q13.42		rs1761461-?	NR	2E-9				Illumina [NR] (imputed)	N
1003	chr19	54827039	54827040	rs1645784	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs1645784-C	0.145	7E-53	(Leukocyte immunoglobulin-like receptor subfamily A member 5, LILRA5.7787.25.3)	0.58	[0.5-0.66] unit decrease	Affymetrix [10572788] (imputed)	N
1003	chr19	54827479	54827480	rs1645782	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	19q13.42		rs1645782-G	0.692386	1E-8		0.0257622	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1003	chr19	54829007	54829008	rs12982481	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.42	NR	rs12982481-C	NR	4E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1003	chr19	54837634	54837635	rs17634081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	19q13.42	NR	rs17634081-T	NR	2E-28		0.0295	[0.024-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr19	54837634	54837635	rs17634081	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	19q13.42	NR	rs17634081-T	NR	4E-25		0.0277	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr19	54839738	54839739	rs7251714	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.42	NR	rs7251714-C	0.01045	1E-8	(HIBADH)	0.3242	NR unit increase	Illumina [1671387] (imputed)	N
1003	chr19	54844625	54844626	rs16985578	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.42	NR	rs16985578-?	NR	5E-10		6.226	NR z score increase	Illumina [at least 830937] (imputed)	N
1003	chr19	54847970	54847971	rs55684444	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	19q13.42	NR	rs55684444-?	NR	1E-6		0.12177446	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1003	chr19	54849941	54849942	rs2241384	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRA4	5,364 Icelandic ancestry individuals	NA	19q13.42		rs2241384-A	0.1823	1E-19		0.218327	[0.17-0.27] unit decrease	Illumina [7506463] (imputed)	N
1003	chr19	54849941	54849942	rs2241384	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	LILRA4	rs2241384-G	0.81109375	1E-14	(LILRA4, 8299_66_3)	0.2380839	[0.18-0.3] unit increase	Illumina [> 1000000] (imputed)	N
1003	chr19	54849941	54849942	rs2241384	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRA4	rs2241384-A	0.17	3E-21	(Leukocyte immunoglobulin-like receptor subfamily A member 4, LILRA4.8299.66.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1003	chr19	54916103	54916104	rs11084337	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	19q13.42	TTYH1	rs11084337-?	NR	9E-7		0.134	[0.081-0.187] unit increase	Illumina [> 2500000] (imputed)	N
1004	chr19	54921226	54921227	rs13344319	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	19q13.42	NR	rs13344319-?	NR	4E-8			[NR]	NR [1665663]	N
1004	chr19	54931982	54931983	rs73606754	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	19q13.42	TTYH1	rs73606754-C	0.863	3E-9		1.5384616	[1.33-1.75]	Affymetrix [NR] (imputed)	N
1004	chr19	54960746	54960747	rs192436652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	19q13.42		rs192436652-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1004	chr19	54960746	54960747	rs192436652	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	19q13.42		rs192436652-T	0.0268	2E-12		0.0319	[0.023-0.041] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1004	chr19	54977018	54977019	rs140440467	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	19q13.42	Intergenic	rs140440467-A	0.9714	8E-11	(MTAG)	0.0269	[0.019-0.035] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1004	chr19	55014171	55014172	rs73070113	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.42	LAIR2	rs73070113-T	0.1323	2E-28	(LAIR 2)	1.0717	[0.88-1.26] unit decrease	Illumina [8683751] (imputed)	N
1004	chr19	55019606	55019607	rs2277972	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.42	LAIR2	rs2277972-T	0.4548	2E-11	(LAIR 2)	0.37825	[0.27-0.49] unit increase	Illumina [8683751] (imputed)	N
1004	chr19	55034108	55034109	rs73070152	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	19q13.42	KIR3DX1	rs73070152-?	0.12	8E-6	(female)	1.477	[1.25-1.75]	Illumina [5595657] (imputed)	N
1004	chr19	55049045	55049046	rs111825282	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.42	KIR3DX1	rs111825282-A	0.1862	2E-10	(LAIR 2)	0.5105	[0.35-0.67] unit increase	Illumina [8683751] (imputed)	N
1005	chr19	55052274	55052275	rs17606864	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	19q13.42	KIR3DX1	rs17606864-T	0.1608	2E-23	(LAIR 2)	0.70303	[0.56-0.84] unit decrease	Illumina [8683751] (imputed)	N
1005	chr19	55055896	55055897	rs77318030	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	19q13.42	NR	rs77318030-C		2E-6		0.2045	[0.12-0.29] SD units increase	NR [10700000] (imputed)	N
1005	chr19	55059248	55059249	rs2019023	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	19q13.42	NR	rs2019023-T		8E-7		0.1942	[0.12-0.27] SD units increase	NR [10700000] (imputed)	N
1005	chr19	55064514	55064515	rs7256693	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	19q13.42	NR	rs7256693-C		5E-6		0.1808	[0.1-0.26] SD units increase	NR [10700000] (imputed)	N
1005	chr19	55080099	55080101	rs199799668	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs199799668-A	0.031	2E-230	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	2.25	[2.11-2.39] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55096747	55096748	rs74345525	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	19q13.42	NR	rs74345525-?	NR	2E-72	(ILT-2)			Illumina [~ 4000000] (imputed)	N
1005	chr19	55096747	55096748	rs74345525	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	LILRB1	rs74345525-T	0.93421875	1E-333	(LILRB1, 5090_49_2)	1.7527214	[1.68-1.83] unit increase	Illumina [> 1000000] (imputed)	N
1005	chr19	55106740	55106741	rs201483250	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	19q13.42	LILRA1	rs201483250-?	NR	1E-6				Illumina [83898]	N
1005	chr19	55107307	55107308	rs35534776	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs35534776-C	0.075	7E-107	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	1.05	[0.95-1.15] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55107374	55107375	rs61739251	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs61739251-T	0.043	4E-257	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	1.87	[1.77-1.97] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55112395	55112396	rs45461791	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	LILRB1, AC009892.5, LILRA1, AC245036.1, AC009892.10	rs45461791-T	0.07444668	5E-32	(EA, Leukocyte immunoglobulin-like receptor subfamily B member 1)	0.9725	[0.82-1.13] unit increase	Affymetrix [509946]	N
1005	chr19	55113805	55113806	rs111744096	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs111744096-C	0.028	5E-217	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	2.37	[2.21-2.53] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55118192	55118193	rs147747784	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	19q13.42	NR	rs147747784-G		9E-8		0.4134	[0.26-0.57] SD units decrease	NR [10700000] (imputed)	N
1005	chr19	55118192	55118193	rs147747784	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	19q13.42	NR	rs147747784-G		1E-6		0.3671	[0.22-0.52] SD units decrease	NR [10700000] (imputed)	N
1005	chr19	55138231	55138232	rs2004318	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	LILRA1, LILRB1, AC009892.5, AC009892.10, LILRB4, VN1R105P, AC245036.1, AC245036.4, AC245036.3, AC245036.6, AC245036.5, AC245036.2, MIR8061, AC009892.9	rs2004318-T	0.0496988	2E-80	(Leukocyte immunoglobulin-like receptor subfamily B member 1)	1.789	[1.62-1.96] unit decrease	Affymetrix [509946]	N
1005	chr19	55144710	55144711	rs61739176	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs61739176-C	0.039	2E-284	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	2.07	[1.95-2.19] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55145092	55145093	rs2114511	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	LILRB1	rs2114511-C	0.051	1E-336	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	1.81	[1.71-1.91] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55145869	55145870	rs4021202	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	19q13.42	NR	rs4021202-?	NR	4E-7		1.19628	[0.73-1.66] unit increase	NR [13958389] (imputed)	N
1005	chr19	55146069	55146070	rs10414578	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	19q13.42	NR	rs10414578-C		4E-7		0.1771	[0.11-0.25] SD units increase	NR [10700000] (imputed)	N
1005	chr19	55147508	55147509	rs113420280	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs113420280-T	0.129	7E-28	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.41	[0.33-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55148030	55148031	rs41308746	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs41308746-C	0.126	6E-37	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.48	[0.4-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55149868	55149868	rs35362819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs35362819-TA	0.638	8E-25	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55153991	55153992	rs145320563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LILRB1	5,363 Icelandic ancestry individuals	NA	19q13.42		rs145320563-C	0.06073	3E-65		0.647523	[0.57-0.72] unit increase	Illumina [7506463] (imputed)	N
1005	chr19	55155283	55155283	rs71195783	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs71195783-CT	0.072	1E-136	(Leukocyte immunoglobulin-like receptor subfamily B member 1, LILRB1.5090.49.2)	1.17	[1.07-1.27] unit decrease	Affymetrix [10572788] (imputed)	N
1005	chr19	55161521	55161522	rs139806220	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19q13.42	NR	rs139806220-?	NR	5E-8	(Native Hawaiian)	1.187	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1005	chr19	55171747	55171748	rs425283	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	19q13.42	LILRB1, LILRB4, LILRP2	rs425283-A	0.1616	9E-6		1.9644	[1.67-2.26]	Illumina [8809853] (imputed)	N
1005	chr19	55174212	55174213	rs1654668	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	19q13.42	Intergenic	rs1654668-?		6E-6		1.3610997	[NR]	Affymetrix [492217] (imputed)	N
1005	chr19	55178777	55178778	rs11574583	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	19q13.42	LILRB4	rs11574583-?		6E-6				NR [~ 3000000] (imputed)	N
1006	chr19	55222806	55222807	rs270776	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	19q13.42	NR	rs270776-G	NR	9E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1006	chr19	55246730	55246731	rs602444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.42	KIR3DL3	rs602444-A	0.613751	4E-10		0.016086927	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1006	chr19	55249059	55249060	rs376891043	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	KIR2DS2	rs376891043-G	0.364	4E-146	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.63	[0.59-0.67] unit increase	Affymetrix [10572788] (imputed)	N
1006	chr19	55252787	55252788	rs1639429	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs1639429-A	0.596	4E-116	(Killer cell immunoglobulin-like receptor 2DS2, KIR2DS2.10428.1.3)	0.59	[0.53-0.65] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55316328	55316329	rs618835	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	Intergenic	rs618835-G	0.3619478	2E-49	(EA, Killer cell immunoglobulin-like receptor 2DL4)	0.6361	[0.56-0.72] unit decrease	Affymetrix [509946]	N
1007	chr19	55320691	55320692	rs76869409	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs76869409-G	0.291	1E-15	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
1007	chr19	55324634	55324635	rs649216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs649216-C	0.499	3E-102	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.51	[0.47-0.55] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55324859	55324860	rs660773	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs660773-A	0.43	3E-107	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.57	[0.51-0.63] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55326072	55326073	rs676443	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs676443-C	0.57	8E-95	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.53	[0.47-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55337182	55337183	rs640396	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs640396-A	0.258	6E-37	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.41	[0.35-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
1007	chr19	55343442	55343443	rs11667799	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs11667799-A	0.432	1E-120	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.58	[0.54-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55347737	55347738	rs78487206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.42	KIR3DL1, KIR2DS4	rs78487206-T	0.16523	3E-11		0.020962482	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr19	55347737	55347738	rs78487206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.42	NR	rs78487206-T	0.163592	9E-11		0.019227	[0.013-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1007	chr19	55362858	55362859	rs640345	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	19q13.42	KIR3DL2	rs640345-T	0.824	8E-9		1.3157895	[1.19-1.45]	Affymetrix, Illumina [38043082] (imputed)	N
1007	chr19	55374471	55374472	rs12980151	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	KIR2DL5A	rs12980151-A	0.263	8E-351	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.92	[0.88-0.96] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55379325	55379326	rs56162245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA			rs56162245-T	NR	7E-14		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1007	chr19	55380213	55380214	rs17771967	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.42	NR	rs17771967-G	0.424	5E-8	(EA)	1.073007	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1007	chr19	55380213	55380214	rs17771967	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	19q13.42	NR	rs17771967-G	0.424	6E-6	(EA)	1.0475605	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1007	chr19	55383050	55383051	rs11672983	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	19q13.42	FCAR, KIR3DL1, KIR3DL2	rs11672983-?		1E-7				Illumina [9578670] (imputed)	N
1007	chr19	55383050	55383051	rs11672983	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	19q13.42	KIR2DL1, LILRB4, NLRP7, NLRP2	rs11672983-A	0.392	7E-11		1.087	[1.055-1.119]	Affymetrix, Illumina [1230000] (imputed)	N
1007	chr19	55384301	55384302	rs11666065	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs11666065-G	0.612	5E-61	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.41	[0.37-0.45] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55389031	55389032	rs73065472	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NR	rs73065472-T	0.224	7E-163	(Killer cell immunoglobulin-like receptor 2DL5A, KIR2DL5A.8000.17.3)	0.73	[0.67-0.79] unit increase	Affymetrix [10572788] (imputed)	N
1007	chr19	55392645	55392646	rs7259090	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	FCAR	rs7259090-A	0.1705115	1E-12	(EA, Killer cell immunoglobulin-like receptor 2DL4)	0.4125	[0.3-0.52] unit increase	Affymetrix [509946]	N
1007	chr19	55414832	55414833	rs150278509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.42	NCR1	rs150278509-G	0.054316	4E-9		0.028952293	[0.019-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1007	chr19	55417730	55417731	rs2278427	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCR1	5,360 Icelandic ancestry individuals	NA			rs2278427-A	0.101	9E-33		0.35796	[0.3-0.42] unit decrease	Illumina [7506463] (imputed)	N
1007	chr19	55418053	55418054	rs2278428	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	NCR1	rs2278428-C	0.081	1E-15	(Natural cytotoxicity triggering receptor 1, NCR1.8360.169.3)	0.36	[0.28-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1007	chr19	55419631	55419632	rs143981324	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	NCR1	rs143981324-T	0.90390625	1E-17	(NCR1, 8360_169_3)	0.36154866	[0.28-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1007	chr19	55433851	55433852	rs12461856	32099098	Polimanti R	2020-02-26	Mol Psychiatry	Leveraging genome-wide data to investigate differences between opioid use vs. opioid dependence in 41,176 individuals from the Psychiatric Genomics Consortium.	Opioid exposure	1,297 African ancestry cases, 2,876 European ancestry cases, 7,063 African ancestry controls, 25,437 European ancestry controls	NA	19q13.42	Intergenic	rs12461856-A	0.8436	1E-6	(EA)	4.833	z score decrease	NR [up to 9065342] (imputed)	N
1007	chr19	55433851	55433852	rs12461856	32099098	Polimanti R	2020-02-26	Mol Psychiatry	Leveraging genome-wide data to investigate differences between opioid use vs. opioid dependence in 41,176 individuals from the Psychiatric Genomics Consortium.	Opioid exposure	1,297 African ancestry cases, 2,876 European ancestry cases, 7,063 African ancestry controls, 25,437 European ancestry controls	NA	19q13.42	Intergenic	rs12461856-A	0.8402	2E-8		5.606	z score decrease	NR [up to 9065342] (imputed)	N
1007	chr19	55440753	55440754	rs12974742	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	19q13.42	NCR1	rs12974742-?	NR	9E-6	(DAG 34:1)	0.3417757	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1008	chr19	55511872	55511873	rs1671135	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	19q13.42	NLRP2, GP6	rs1671135-C	NR	3E-9		1.0752687	[1.05-1.11]	Affymetrix, Illumina [12923718] (imputed)	N
1008	chr19	55511872	55511873	rs1671135	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	19q13.42	NR	rs1671135-?	NR	2E-9		0.0758	[0.051-0.101] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1008	chr19	55512010	55512011	rs16986158	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GP6	5,361 Icelandic ancestry individuals	NA	19q13.42		rs16986158-C	0.09592	1E-22		0.312106	[0.25-0.37] unit increase	Illumina [7506463] (imputed)	N
1008	chr19	55526344	55526345	rs1671152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.42	GP6	rs1671152-G	0.840489	3E-9		0.018367812	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr19	55526344	55526345	rs1671152	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	19q13.42	GP6	rs1671152-G	0.835	3E-9	(collagen 4)	0.194	[0.13-0.26] unit decrease	Illumina [129094]	N
1008	chr19	55526344	55526345	rs1671152	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	19q13.42	GP6	rs1671152-G	0.835	2E-8	(collagen 3)	0.181	[0.12-0.24] unit decrease	Illumina [129094]	N
1008	chr19	55526344	55526345	rs1671152	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	19q13.42	GP6	rs1671152-G	0.835	1E-9	(collagen 2)	0.198	[0.13-0.26] unit decrease	Illumina [129094]	N
1008	chr19	55526344	55526345	rs1671152	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	19q13.42	GP6	rs1671152-G	0.835	1E-9	(collagen 1)	0.199	[0.13-0.26] unit decrease	Illumina [129094]	N
1008	chr19	55526344	55526345	rs1671152	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	19q13.42	GP6	rs1671152-G	0.84	3E-9		0.0293111	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1008	chr19	55526344	55526345	rs1671152	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	19q13.42	GP6	rs1671152-G	0.84	8E-11		0.03201713	[0.022-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1008	chr19	55526344	55526345	rs1671152	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	19q13.42	GP6	rs1671152-T	0.142	8E-14	(collagen)			Affymetrix, Illumina [~ 2330000] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	19q13.42	NR	rs1613662-A	0.842652	4E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix [23037915] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	19q13.42	NR	rs1613662-G	0.1451	2E-12		0.0243097	[0.018-0.031] unit increase	Affymetrix [3505788] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Dickkopf-related protein 1 levels	21,758 European ancestry individuals	9,173 individuals	19q13.42		rs1613662-A	0.85	4E-6		0.0535	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.42	GP6	rs1613662-A	0.833754	2E-143		0.078040116	[0.072-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs1613662-G	0.168319	5E-99				Affymetrix, Illumina [17210439] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	19q13.42	GP6	rs1613662-A	0.833	8E-45		0.06738503	[0.058-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1008	chr19	55536594	55536595	rs1613662	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.42	GP6	rs1613662-A	0.833	9E-28		0.05273665	[0.043-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1008	chr19	55538979	55538980	rs1654425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.42	GP6	rs1654425-C	0.834164	7E-69		0.053637266	[0.048-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55538979	55538980	rs1654425	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.42	NR	rs1654425-T	0.16562	1E-99		0.054784	[0.05-0.06] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1008	chr19	55538979	55538980	rs1654425	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	GP6	rs1654425-C	0.8359375	7E-150	(GP6, 3194_36_2)	0.81828564	[0.76-0.88] unit increase	Illumina [> 1000000] (imputed)	N
1008	chr19	55539071	55539072	rs892090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.42	GP6	rs892090-G	0.834599	2E-34		0.036827233	[0.031-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55539071	55539072	rs892090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.42	GP6	rs892090-G	0.834587	3E-37		0.03836698	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55539071	55539072	rs892090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	19q13.42	GP6	rs892090-G	0.834654	6E-26		0.031443425	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55539071	55539072	rs892090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	19q13.42	GP6	rs892090-G	0.834652	1E-28		0.033106588	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55543659	55543660	rs199588110	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	19q13.42	GP6	rs199588110-?	NR	9E-14		6.4		Illumina [11329225] (imputed)	N
1008	chr19	55544202	55544203	rs61658003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.42	GP6	rs61658003-A	0.842981	1E-9		0.01864642	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1008	chr19	55544202	55544203	rs61658003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.42		rs61658003-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1008	chr19	55545283	55545284	rs12609736	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GP6	5,361 Icelandic ancestry individuals	NA	19q13.42		rs12609736-A	0.1659	5E-280		0.818649	[0.77-0.86] unit decrease	Illumina [7506463] (imputed)	N
1008	chr19	55547042	55547043	rs112822051	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	19q13.42	GP6	rs112822051-C	0.97	3E-6		2.56	[1.67-3.93]	Illumina [6220060] (imputed)	N
1008	chr19	55553646	55553647	rs1654439	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	CTC-550B14.6, RDH13, GP6, CTC-550B14.7	rs1654439-T	0.1701807	7E-31	(EA, Platelet glycoprotein VI)	0.6565	[0.55-0.76] unit decrease	Affymetrix [509946]	N
1008	chr19	55564614	55564615	rs2124089	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GP6	5,361 Icelandic ancestry individuals	NA	19q13.42		rs2124089-C	0.1004	1E-46		0.43845	[0.38-0.5] unit increase	Illumina [7506463] (imputed)	N
1008	chr19	55565633	55565634	rs11672111	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	19q13.42	RDH13, CTC-550B14.6, CTC-550B14.7	rs11672111-C	0.1039157	7E-13	(EA, Platelet glycoprotein VI)	0.5135	[0.38-0.65] unit increase	Affymetrix [509946]	N
1008	chr19	55565790	55565791	rs11672139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.42	RDH13	rs11672139-A	0.102612	1E-9		0.022621552	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1008	chr19	55565928	55565929	rs76119016	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.42	RDH13	rs76119016-A	0.10284	2E-12		0.026336422	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55653296	55653297	rs67795913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	19q13.42		rs67795913-C	0.18929	2E-9		0.0168344	[0.011-0.022] unit decrease	Illumina [13479295] (imputed)	N
1009	chr19	55653296	55653297	rs67795913	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	19q13.42	TNNT1	rs67795913-?	NR	1E-8		0.022393396	[0.015-0.03] unit decrease	Illumina [27896057] (imputed)	N
1009	chr19	55653296	55653297	rs67795913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.42		rs67795913-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1009	chr19	55664952	55664953	rs11671466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.42	TNNI3	rs11671466-A	0.097418	7E-14		0.028034713	[0.021-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55670824	55670825	rs28377509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.42	NR	rs28377509-C	0.208882	2E-26		0.024873	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1009	chr19	55691417	55691418	rs3810352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.42		rs3810352-C	NR	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1009	chr19	55691599	55691600	rs3810353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q13.42		rs3810353-G	0.302548331	3E-8		0.05923568	[0.038-0.08] unit increase	Illumina [13134967] (imputed)	N
1009	chr19	55691599	55691600	rs3810353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.42	SYT5	rs3810353-G	0.090925	4E-9		0.023174927	[0.015-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55691599	55691600	rs3810353	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.42	NR	rs3810353-G	0.092392	8E-17		0.027444	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1009	chr19	55691900	55691901	rs3810354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.42	SYT5	rs3810354-C	0.090813	6E-10		0.024411922	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55691900	55691901	rs3810354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs3810354-C	0.125456	4E-15				Affymetrix, Illumina [23467995] (imputed)	N
1009	chr19	55693014	55693015	rs17458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	19q13.42		rs17458-T	NR	1E-9		0.0627	[0.043-0.083] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1009	chr19	55693243	55693244	rs2288419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.42	NR	rs2288419-C	0.259483	5E-36				Affymetrix, Illumina [24588908] (imputed)	N
1009	chr19	55693285	55693286	rs45607834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	19q13.42		rs45607834-T	NR	2E-9		0.0228	[0.015-0.03] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1009	chr19	55693285	55693286	rs45607834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.42		rs45607834-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1009	chr19	55693468	55693469	rs45541434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	19q13.42	PTPRH	rs45541434-T	0.011552	2E-10		0.06636268	[0.046-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55693468	55693469	rs45541434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	19q13.42	PTPRH	rs45541434-T	0.011555	1E-10		0.06765684	[0.047-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55693468	55693469	rs45541434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.42	PTPRH	rs45541434-T	0.01159	2E-17		0.08946641	[0.069-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55693468	55693469	rs45541434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.42	PTPRH	rs45541434-T	0.011554	4E-9		0.06137939	[0.041-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55693468	55693469	rs45541434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	19q13.42	PTPRH	rs45541434-T	0.0119	5E-10		0.1052062	[0.072-0.138] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1009	chr19	55695723	55695724	rs8106704	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	19q13.42	NR	rs8106704-A	0.552784	1E-17		0.032192	[0.025-0.04] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1009	chr19	55697711	55697712	rs147881000	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	19q13.42		rs147881000-?	NR	4E-21		0.17206	[0.13-0.21] unit decrease	NR [9800000] (imputed)	N
1009	chr19	55697711	55697712	rs147881000	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	19q13.42		rs147881000-?	NR	2E-9		0.106198	[0.067-0.145] unit increase	NR [9800000] (imputed)	N
1009	chr19	55697711	55697712	rs147881000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.42	PTPRH	rs147881000-A	0.00271399999999999	4E-21		0.20440836	[0.16-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55697711	55697712	rs147881000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.42	PTPRH	rs147881000-A	0.00271600000000005	2E-13		0.16065167	[0.12-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55697711	55697712	rs147881000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.42	PTPRH	rs147881000-A	0.00270199999999998	5E-12		0.14829263	[0.11-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55698164	55698165	rs2365726	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	19q13.42	NR	rs2365726-?	NR	2E-11		0.02999	[0.021-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1009	chr19	55698244	55698245	rs4806469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.42		rs4806469-A	NR	7E-26		0.0234	[0.019-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1009	chr19	55698244	55698245	rs4806469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.42	PTPRH	rs4806469-A	0.193352	8E-9		0.016284056	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55698488	55698489	rs2365729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	19q13.42		rs2365729-G	NR	1E-8		0.0222	[0.015-0.03] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1009	chr19	55698495	55698496	rs2886444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	19q13.42	PTPRH	rs2886444-G	0.110382	2E-19		0.032684408	[0.026-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55698508	55698509	rs2365731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.42	PTPRH	rs2365731-T	0.110615	8E-11		0.023869647	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1009	chr19	55700371	55700372	rs78287392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.42	PTPRH	rs78287392-A	0.108222	8E-11		0.023959829	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1009	chr19	55700371	55700372	rs78287392	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.42	PTPRH	rs78287392-A	0.108208	4E-9		0.021825127	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr19	55731713	55731714	rs28446219	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs28446219-T	NR	2E-10		0.115536	[0.08-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55732499	55732500	rs10413948	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs10413948-A	NR	2E-10		0.115524	[0.08-0.151] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55735398	55735399	rs73619586	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	PTPRH, TMEM86B	rs73619586-C	0.834055	2E-12	(1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2)*)	0.21	[0.15-0.27] unit increase	Illumina [13039987] (imputed)	N
1010	chr19	55735477	55735478	rs139704751	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	19q13.42	Intergenic	rs139704751-T	1.0	1E-6	(AA)	0.59	unit increase	Illumina [NR] (imputed)	N
1010	chr19	55737797	55737798	rs56154925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs56154925-T	NR	5E-11		0.0971671	[0.068-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55737797	55737798	rs56154925	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs56154925-T	NR	8E-14		0.107806	[0.08-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55737797	55737798	rs56154925	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	19q13.42	PTPRH, TMEM86B	rs56154925-?	NR	2E-8		1.1363636	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
1010	chr19	55738180	55738181	rs3826884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_36:5_[M-H]1-/Phosphatidylethanolamine-P_36:4_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs3826884-A	NR	4E-11		0.0989987	[0.07-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55738180	55738181	rs3826884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine-O_34:3_[M-H]1-/Phosphatidylethanolamine-P_34:2_[M-H]1- levels	13,814 British ancestry individuals	NA	19q13.42		rs3826884-A	NR	1E-13		0.108739	[0.08-0.137] unit decrease	Affymetrix [87696910] (imputed)	N
1010	chr19	55738180	55738181	rs3826884	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	19q13.42	TMEM86B	rs3826884-G	0.791518	2E-13	(1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)*)	0.199	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1010	chr19	55738180	55738181	rs3826884	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	19q13.42	TMEM86B	rs3826884-G	0.791518	2E-13	(1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4)*)	0.199	[0.15-0.25] unit increase	Illumina [13039987] (imputed)	N
1010	chr19	55738745	55738746	rs4374298	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylethanolamine-ether levels	2,045 European ancestry individuals	NA	19q13.42	TMEM86B	rs4374298-A	NR	2E-8	(PEO(16:1;0-20:4;0))	0.2505	[0.16-0.34] unit decrease	Illumina [~ 9300000] (imputed)	N
1010	chr19	55739812	55739813	rs10419308	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	19q13.42	TMEM86B	rs10419308-A	NR	2E-7		0.827	[0.75-0.9]	NR [NR] (imputed)	N
1010	chr19	55739812	55739813	rs10419308	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	19q13.42	TMEM86B	rs10419308-A	NR	4E-8		0.84	[0.78-0.9]	Illumina [NR] (imputed)	N
1010	chr19	55739812	55739813	rs10419308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.42	TMEM86B	rs10419308-A	0.180192	2E-25		0.030589199	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr19	55762224	55762225	rs3848610	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	19q13.42	PPP6R1	rs3848610-T		5E-6		0.836	[0.774-0.903]	Illumina [4498586] (imputed)	N
1010	chr19	55763261	55763262	rs73068668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	19q13.42		rs73068668-A	NR	2E-8		0.0254	[0.017-0.034] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1010	chr19	55763261	55763262	rs73068668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	19q13.42	PPP6R1	rs73068668-A	0.075633	6E-9		0.0234783	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr19	55763261	55763262	rs73068668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.42	PPP6R1	rs73068668-A	0.075651	3E-12		0.029166725	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1010	chr19	55763261	55763262	rs73068668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	19q13.42	NR	rs73068668-A	0.075978	3E-14		0.02798	[0.021-0.035] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1010	chr19	55763261	55763262	rs73068668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.42		rs73068668-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1010	chr19	55772411	55772412	rs10421676	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	19q13.42	PPP6R1, HSPBP1	rs10421676-G	0.597923377023335	1E-8		0.0273	[0.018-0.037] SD increase	Illumina [22400000] (imputed)	N
1010	chr19	55816677	55816678	rs1172821	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	19q13.42	NR	rs1172821-T	0.3632	4E-6	(EA)	0.0297	[0.017-0.042] unit decrease	Illumina [~ 11800000] (imputed)	N
1010	chr19	55818224	55818225	rs79723785	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	19q13.42	BRSK1	rs79723785-T	0.9835	1E-8		0.1674	[0.11-0.22] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
1010	chr19	55819844	55819845	rs1172822	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	19q13.42	BRSK1	rs1172822-T	0.37	2E-19	(age at natural menopause)	0.49	[0.38-0.60] years decrease	Illumina [317759]	N
1010	chr19	55819844	55819845	rs1172822	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	19q13.42	BRSK1, TMEM224, SUV420H2	rs1172822-T	0.39	6E-11		0.39	[0.27-0.51] years decrease	Illumina [315418]	N
1010	chr19	55824331	55824332	rs7246479	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	19q13.42	TMEM150B	rs7246479-G	0.51	3E-8		5.54	z-score increase	Affymetrix [4314223] (imputed)	N
1010	chr19	55827174	55827175	rs34962991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19q13.42		rs34962991-?	NR	1E-105				NR [~ 8900000] (imputed)	N
1010	chr19	55831818	55831819	rs201935337	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	19q13.42	TMEM150B	rs201935337-?	NR	5E-11				Illumina [83898]	N
1010	chr19	55833663	55833664	rs11668344	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	19q13.42	NR	rs11668344-A	0.9602	2E-7	(japanese)	0.343	[0.21-0.47] year increase	Illumina [at least 532488] (imputed)	N
1010	chr19	55833663	55833664	rs11668344	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	19q13.42	BRSK1, NLRP11, U2AF2	rs11668344-G	0.36	6E-85		0.41	[0.37-0.45] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1010	chr19	55833663	55833664	rs11668344	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	19q13.42	NR	rs11668344-A	0.636	5E-26		0.3043	[0.25-0.36] years decrease	NR [NR]	N
1010	chr19	55833663	55833664	rs11668344	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	19q13.42	TMEM150B	rs11668344-G	0.363	1E-59		0.416	[0.37-0.47] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
1011	chr19	55846804	55846805	rs9749556	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs9749556-?		3E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	19q13.42		rs4252548-T	0.0241	2E-19		1.3886055	[1.292736532-1.491584065]	Affymetrix, Illumina [NR] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.42	IL11	rs4252548-T	0.0218	5E-35		0.0774	[0.065-0.09] unit decrease	Affymetrix [18391927] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	19q13.42	IL11	rs4252548-T	0.022	7E-19		0.08	[0.064-0.096] unit decrease	Affymetrix [18391927] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	19q13.42	IL11	rs4252548-T	0.022	8E-18		0.08	[0.062-0.098] unit decrease	Affymetrix [18391927] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	19q13.42	NR	rs4252548-T	0.02	2E-12		1.32	[1.22-1.43]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	19q13.42		rs4252548-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.42		rs4252548-?	NR	3E-68				NR [~ 8900000] (imputed)	N
1011	chr19	55879671	55879672	rs4252548	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	19q13.42	IL11	rs4252548-T	NR	2E-11	(additive)	1.3	[1.20-1.4]	Affymetrix, Illumina [11554240] (imputed)	N
1011	chr19	55879871	55879872	rs1126757	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	19q13.42	NR	rs1126757-T	0.473	2E-9		0.00649966	[0.0044-0.0086] unit increase	NR [9732723] (imputed)	N
1011	chr19	55879871	55879872	rs1126757	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	19q13.42	NR	rs1126757-T	0.473	3E-8		0.014162277	[0.0092-0.0192] unit increase	NR [~ 10000000] (imputed)	N
1011	chr19	55879871	55879872	rs1126757	20360315	Uher R	2010-04-01	Am J Psychiatry	Genome-wide pharmacogenetics of antidepressant response in the GENDEP project.	Response to antidepressants	706 European ancestry individuals	NA	19q13.42	IL11	rs1126757-?	0.48	3E-6	(escitalopram)	10.4	[NR] unit increase	Illumina [539391]	N
1011	chr19	55886018	55886019	rs35791293	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	19q13.42	TMEM190	rs35791293-C	0.52546875	1E-458	(TMEM190, 10442_1_3)	0.98284113	[0.95-1.02] unit increase	Illumina [> 1000000] (imputed)	N
1011	chr19	55886191	55886192	rs11666276	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11666276-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55886191	55886192	rs11666276	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11666276-?		3E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55886191	55886192	rs11666276	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11666276-?		2E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55888094	55888095	rs4806666	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.42	TMEM190	rs4806666-T	0.438	4E-689	(Transmembrane protein 190, TMEM190.10442.1.3)	1.0	[0.96-1.04] unit decrease	Affymetrix [10572788] (imputed)	N
1011	chr19	55900416	55900417	rs11668142	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11668142-?		4E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55900416	55900417	rs11668142	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11668142-?		7E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
1011	chr19	55900416	55900417	rs11668142	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	19q13.42	NR	rs11668142-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	19q13.42		rs147110934-T	NR	2E-40		0.0716	[0.061-0.082] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.42	ZNF628	rs147110934-T	0.0243	9E-32		0.0722	[0.06-0.084] unit decrease	Affymetrix [18391927] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	19q13.42	ZNF628	rs147110934-T	0.024	2E-13		0.06	[0.044-0.076] unit decrease	Affymetrix [18391927] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	19q13.42	ZNF628	rs147110934-T	0.024	3E-22		0.09	[0.072-0.108] unit decrease	Affymetrix [18391927] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	19q13.42	ZNF628	rs147110934-G	0.975442	2E-9		0.05233	[0.035-0.069] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.42		rs147110934-?	NR	1E-64				NR [~ 8900000] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.42	NR	rs147110934-?	NR	8E-9		0.41608	[0.27-0.56] unit decrease	Affymetrix [7794483] (imputed)	N
1012	chr19	55993435	55993436	rs147110934	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	19q13.42	NR	rs147110934-?	NR	2E-9	(male)	0.68544	[0.46-0.91] unit decrease	Affymetrix [7794483] (imputed)	N
1012	chr19	55995764	55995764	rs546748948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	19q13.42	ZNF628	rs546748948-GCC	NR	2E-10		0.0630759	[0.044-0.083] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	19q13.42	NAT14	rs8103017-G	NR	1E-12		0.0222967	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	19q13.42	NAT14	rs8103017-G	NR	1E-12		0.0221829	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	19q13.42	NR	rs8103017-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	19q13.42		rs8103017-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	19q13.42	NR	rs8103017-C	0.7044	3E-19		0.0196	[0.015-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	19q13.42	NA	rs8103017-C	0.7044	2E-14		0.0165	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1012	chr19	55999141	55999142	rs8103017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	19q13.42	NR	rs8103017-C	0.7044	2E-14		0.0165	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1012	chr19	56001664	56001665	rs114976626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	19q13.42	SSC5D	rs114976626-T	0.0286	4E-7		0.1109	[0.068-0.154] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1012	chr19	56030802	56030803	rs117115124	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	19q13.42		rs117115124-A	NR	3E-8		4.5691	[3.01-6.12] unit increase	Illumina [NR] (imputed)	N
1012	chr19	56032710	56032711	rs639436	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	19q13.42	SSC5D, SBK2	rs639436-G	0.794299021	4E-6		1.1027007	[1.06-1.15]	Illumina [10439017] (imputed)	N
1012	chr19	56039472	56039473	rs8102243	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	19q13.42		rs8102243-?	NR	2E-7				Affymetrix [810906]	N
1012	chr19	56051311	56051315	rs201074342	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	19q13.42	SGK110, SBK2	rs201074342-I	0.896	5E-7		0.138	[0.085-0.192] unit decrease	Illumina [11942402] (imputed)	N
1012	chr19	56086583	56086584	rs12151142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	19q13.42		rs12151142-C	NR	1E-16		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1012	chr19	56091331	56091332	rs149546760	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19q13.42	ZNF579	rs149546760-C	0.01	5E-6	(Age 20-60 years)	0.339	[0.19-0.48] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1013	chr19	56102361	56102362	rs12610709	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.42	FIZ1	rs12610709-G	0.828912	5E-17		0.0222318	[0.017-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr19	56102361	56102362	rs12610709	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	19q13.42	SIGLEC31P	rs12610709-?	NR	7E-13		0.025	[0.019-0.031] unit increase	Affymetrix [5701386] (imputed)	N
1013	chr19	56108613	56108614	rs34715654	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	19q13.42	NR	rs34715654-A	NR	7E-14		0.0242	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1013	chr19	56111074	56111075	rs140900046	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	19q13.42	FIZ1	rs140900046-A	0.01	4E-6	(Age 20-60 years)	0.3405	[0.20-0.49] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1013	chr19	56134037	56134038	rs908668	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	19q13.42	NR	rs908668-T	0.2081	1E-11		1.051	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1013	chr19	56136058	56136059	rs57314044	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	19q13.42	NA	rs57314044-T	0.2163	1E-8	(Female)	1.053	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1013	chr19	56173376	56173377	rs79546472	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19q13.42	NR	rs79546472-?	NR	1E-6		0.375	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1013	chr19	56181407	56181408	rs36092527	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.42	U2AF2	rs36092527-T	0.884991	2E-8		0.0168993	[0.011-0.023] unit increase	Affymetrix [NR] (imputed)	N
1013	chr19	56221457	56221458	rs151017994	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	19q13.42		rs151017994-A	0.01	4E-8				NR [NR] (imputed)	N
1013	chr19	56229331	56229332	rs58869521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.42		rs58869521-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1014	chr19	56265663	56265664	rs17634917	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	19q13.42	RFPL4A	rs17634917-A	0.94	3E-6	(% improvement - 12 weeks)	1.371	[1.23-1.51]	Affymetrix, Illumina [1200000] (imputed)	N
1014	chr19	56265663	56265664	rs17634917	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	19q13.42	EPN1, NLRP9, NLRP11, RFPL4A	rs17634917-G	0.0573945	6E-6	(% improvement - SSRI treated - 12 weeks)	0.3761	[0.21-0.54] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
1014	chr19	56310227	56310228	rs2547274	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	19q13.42	BRSK1, NLRP11, U2AF2	rs2547274-G	0.91	3E-13		0.28	[0.2-0.36] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1014	chr19	56313527	56313528	rs299175	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	19q13.43	NLRP11	rs299175-?	0.46	4E-6			[NR]	Illumina [551642]	N
1014	chr19	56320662	56320663	rs12461110	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	19q13.43	NLRP11	rs12461110-A	0.363647	5E-11		0.020776	[0.015-0.027] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1014	chr19	56320662	56320663	rs12461110	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	19q13.43	BRSK1, NLRP11, U2AF2	rs12461110-A	0.35	8E-16		0.17	[0.13-0.21] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1014	chr19	56320662	56320663	rs12461110	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	19q13.43	NR	rs12461110-A	0.3594	9E-8		0.1553	[0.098-0.212] years increase	NR [NR]	N
1014	chr19	56320662	56320663	rs12461110	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	19q13.43	NLRP11	rs12461110-A	0.356	9E-10		0.158	[0.11-0.21] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
1014	chr19	56321413	56321414	rs299163	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	19q13.43		rs299163-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1014	chr19	56359711	56359712	rs140747965	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	19q13.43	NR	rs140747965-?	NR	7E-6		1.5437	[0.73-2.36] unit decrease	Illumina [at least 560000] (imputed)	N
1015	chr19	56367483	56367484	rs60624745	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	19q13.43	NR	rs60624745-C	0.721586	6E-6		1.1627907	[1.09-1.23]	Illumina [8992756] (imputed)	N
1015	chr19	56372704	56372705	rs4801635	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	19q13.43	NLRP4	rs4801635-C	NR	9E-7	(men)	0.2047707	[0.12-0.29] unit increase	Illumina [5527232] (imputed)	N
1015	chr19	56385268	56385269	rs73060187	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs73060187-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1015	chr19	56411073	56411074	rs182734612	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	19q13.43	NLRP13	rs182734612-?	NR	6E-6		1.13	[1.06-1.20]	Affymetrix, Illumina [39235000] (imputed)	N
1015	chr19	56423667	56423668	rs304001	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	19q13.43	NLRP13	rs304001-G	0.394362	3E-12		0.021718	[0.016-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1015	chr19	56448707	56448708	rs12609752	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	19q13.43	NR	rs12609752-C	0.98	7E-6	(EA)	0.3	[0.17-0.44] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1015	chr19	56450531	56450532	rs9636113	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	19q13.43	NR	rs9636113-T	0.418	4E-6		0.154	[0.089-0.219] unit increase	Illumina [NR] (imputed)	N
1015	chr19	56451048	56451049	rs2043599	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	19q13.43	NR	rs2043599-?	NR	6E-6		3.748	[2.19-5.3] unit decrease	Illumina [498648]	N
1015	chr19	56451048	56451049	rs2043599	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	19q13.43	NR	rs2043599-?	NR	5E-6		10.48	[6.17-14.79] unit decrease	Illumina [498648]	N
1015	chr19	56451048	56451049	rs2043599	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	19q13.43	NLRP13, NLRP8	rs2043599-G		5E-7	(AA)			Illumina [NR]	N
1015	chr19	56487618	56487619	rs61734100	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	19q13.43	NLRP8	rs61734100-G	0.108	8E-11				Illumina [239042]	N
1016	chr19	56497959	56497960	rs16986856	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	NLRP8	rs16986856-A	0.454	8E-6	(Moderate activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1016	chr19	56505037	56505038	rs73615451	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	19q13.43	NR	rs73615451-?	NR	4E-6		0.275582	[0.16-0.39] unit decrease	NR [13958389] (imputed)	N
1016	chr19	56507947	56507948	rs55928325	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	19q13.43	NLRP5, ZNF582	rs55928325-?		5E-6		3.22	[1.16-5.28] unit increase	Illumina [~ 4900000] (imputed)	N
1016	chr19	56546044	56546045	rs116895675	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	19q13.43		rs116895675-A	0.04073	2E-6		1.595	[1.318-1.93]	Affymetrix [7975321] (imputed)	N
1016	chr19	56551607	56551608	rs7255126	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	19q13.43	NR	rs7255126-T	0.0255987	2E-6		0.2696	[0.16-0.38] unit decrease	Illumina [up to 1980188] (imputed)	N
1016	chr19	56595732	56595733	rs668056	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	19q13.43	ZNF787	rs668056-?	NR	2E-6				Affymetrix [5908111] (imputed)	N
1016	chr19	56595732	56595733	rs668056	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	19q13.43	ZNF787	rs668056-?	NR	3E-6				Affymetrix [5908111] (imputed)	N
1016	chr19	56598122	56598123	rs12052157	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	19q13.43	intergenic	rs12052157-G	0.2584	3E-7	(Nasal protrusion)	0.2293	[0.11-0.35] unit increase	Illumina [34985077] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.43	NR	rs4077285-G	0.9062088	2E-15		0.0117493	[0.0089-0.0146] unit increase	Affymetrix [16582909] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.43	NR	rs4077285-G	0.9062301	2E-8		0.0114975	[0.0073-0.0157] unit increase	Affymetrix [16585854] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.43	NR	rs4077285-G	0.9061908	2E-8		0.0118493	[0.0079-0.0158] unit increase	Affymetrix [16582621] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.43	NR	rs4077285-G	0.9062088	2E-14		0.0129279	[0.0098-0.0161] unit increase	Affymetrix [16582965] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.43	NR	rs4077285-G	0.9062301	2E-9		0.0141029	[0.0093-0.0189] unit increase	Affymetrix [16585866] (imputed)	N
1016	chr19	56599404	56599405	rs4077285	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.43	NR	rs4077285-G	0.9061908	9E-8		0.0119828	[0.0078-0.0162] unit increase	Affymetrix [16582614] (imputed)	N
1016	chr19	56605843	56605843	rs57458324	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	P-selectin glycoprotein ligand 1 levels	21,758 European ancestry individuals	9,173 individuals	19q13.43		rs57458324-CT	0.22	1E-5		0.0762	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1016	chr19	56609302	56609303	rs73059933	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	19q13.43	ZNF787	rs73059933-A	0.203	4E-6		0.042	[0.024-0.06] unit decrease	Affymetrix [7947838] (imputed)	N
1016	chr19	56615172	56615173	rs56289422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	19q13.43	NR	rs56289422-T	NR	2E-9		0.0252	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1017	chr19	56639860	56639861	rs497453	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	19q13.43	ZNF787, ZNF444	rs497453-?	NR	2E-17		0.03897	[0.03-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1017	chr19	56640247	56640248	rs2932757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	19q13.43		rs2932757-A	0.691504	4E-24		0.0363077	[0.029-0.043] unit decrease	Illumina [13478928] (imputed)	N
1017	chr19	56643525	56643526	rs678540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	19q13.43	NR	rs678540-T	0.308043	1E-27		0.043976	[0.036-0.052] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1017	chr19	56644039	56644040	rs665857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs665857-A	0.923157	3E-25				Affymetrix, Illumina [24588908] (imputed)	N
1017	chr19	56657012	56657013	rs7255998	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	19q13.43	NR	rs7255998-A	0.88	8E-6	(EA)	3.25	[1.88-4.62] bpm decrease	Illumina [at least 1100000] (imputed)	N
1017	chr19	56688780	56688781	rs111265125	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	19q13.43	GALP	rs111265125-C	0.022	1E-12	(Galanin-like peptide, GALP.9398.30.3)	0.65	[0.47-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1017	chr19	56689465	56689466	rs73617540	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs73617540-?	NR	8E-9				Affymetrix [NR] (imputed)	N
1017	chr19	56692442	56692443	rs274173	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	19q13.43	GALP, ZNF444, ZSCAN5A	rs274173-C	0.17	5E-6		0.23	[0.13-0.33] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
1017	chr19	56733424	56733425	rs34187696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	19q13.43		rs34187696-A	NR	1E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1017	chr19	56733424	56733425	rs34187696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	19q13.43	ZSCAN5A	rs34187696-A	0.286109	1E-12		0.017360616	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1017	chr19	56733424	56733425	rs34187696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs34187696-A	0.258216	1E-15				Affymetrix, Illumina [23467995] (imputed)	N
1017	chr19	56733424	56733425	rs34187696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	19q13.43	NR	rs34187696-A	0.284087	7E-18		0.018113	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1017	chr19	56736551	56736551	rs79216979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	19q13.43	ZSCAN5A	rs79216979-GA	0.277244	6E-12		0.017479133	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr19	56813352	56813353	rs543259829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pancreatic cancer	499 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	19q13.43		rs543259829-G	0.001019688	3E-8		10.186363	[6.58-13.79] unit increase	Illumina [13427108] (imputed)	N
1018	chr19	56851167	56851168	rs34259704	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	19q13.43	NR	rs34259704-C	0.045	6E-6	(Males)	0.626107	[0.36-0.9] unit increase	Illumina [~ 6600000] (imputed)	N
1019	chr19	57011472	57011472	rs61469827	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.43	ZNF667-AS1	rs61469827-?	NR	3E-8		0.0156	[0.011-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1019	chr19	57011473	57011473	rs386389327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	19q13.43		rs386389327-CTT	NR	5E-13		0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1020	chr19	57037102	57037103	rs16987303	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	19q13.43		rs16987303-C	0.818	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1020	chr19	57037102	57037103	rs16987303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.43		rs16987303-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1020	chr19	57037102	57037103	rs16987303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.43		rs16987303-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1020	chr19	57051286	57051287	rs4801172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	19q13.43	NR	rs4801172-G	NR	2E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr19	57051286	57051287	rs4801172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	19q13.43	NR	rs4801172-G	NR	1E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1020	chr19	57063915	57063916	rs399970	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	19q13.43	ZFP28	rs399970-T	0.749863	7E-17		0.00223672	[0.0017-0.0028] unit decrease	Affymetrix [13995440] (imputed)	N
1020	chr19	57063915	57063916	rs399970	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	19q13.43	ZFP28	rs399970-G	0.25	6E-9		5.82	z-score increase	Affymetrix [4311822] (imputed)	N
1020	chr19	57063915	57063916	rs399970	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.43	ZFP28	rs399970-T	0.749999	2E-8		0.0132468	[0.0086-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
1020	chr19	57089834	57089835	rs34863160	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	ZNF470	rs34863160-G	0.0020	9E-6	(Birth weight )	0.02	[NR] kg increase	Illumina [899892]	N
1020	chr19	57101875	57101876	rs11667653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	19q13.43	SIGLEC31P, ZNF71	rs11667653-T	0.189742	7E-10		0.017637542	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1020	chr19	57101875	57101876	rs11667653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs11667653-T	0.160956	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
1020	chr19	57101875	57101876	rs11667653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	19q13.43	NR	rs11667653-T	0.18928	2E-13		0.018123	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1020	chr19	57107165	57107166	rs77926443	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	19q13.43	ZNF71	rs77926443-T	0.011	3E-6		3.692	[2.128-6.407]	Affymetrix, Illumina [14074516] (imputed)	N
1020	chr19	57128953	57128954	rs115442558	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	19q13.43	ZNF71	rs115442558-?	NR	7E-6		1.26	[1.14-1.39]	Affymetrix, Illumina [39235000] (imputed)	N
1020	chr19	57130028	57130029	rs60824884	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs60824884-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1020	chr19	57130103	57130104	rs79432393	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs79432393-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1020	chr19	57130381	57130382	rs116374564	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs116374564-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1020	chr19	57131064	57131065	rs77488532	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	19q13.43		rs77488532-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1020	chr19	57132237	57132238	rs10404342	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	19q13.43	ZNF71	rs10404342-?		8E-6				Illumina [442089]	N
1020	chr19	57132967	57132968	rs2072501	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	19q13.43	NR	rs2072501-?	NR	8E-19		0.3	[0.22-0.38] unit increase	Illumina [at least 830937] (imputed)	N
1021	chr19	57198572	57198573	rs7258285	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	19q13.43	NR	rs7258285-G	0.7	3E-6		1.66	[1.34-2.06]	Illumina [17125421] (imputed)	N
1021	chr19	57225018	57225019	rs7259811	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	19q13.43	ZNF835	rs7259811-?	NR	5E-6				Illumina [2668805]	N
1021	chr19	57246308	57246309	rs10414170	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (G. vaginalis)	171 Kenyan ancestry individuals	NA	19q13.43	ZIM2-AS1, ZNF835	rs10414170-C	0.3	7E-6		0.62	NR unit decrease	Illumina [336151] (imputed)	N
1021	chr19	57250897	57250898	rs9967637	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	19q13.43		rs9967637-G	0.01	3E-6		2.03	unit increase	Affymetrix [NR] (imputed)	N
1023	chr19	57417913	57417914	rs7249211	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	19q13.43	PEG3, USP29	rs7249211-G	0.29	6E-6	(men)	0.104	[0.059-0.149] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1023	chr19	57474119	57474120	rs7257519	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	19q13.43	NR	rs7257519-A	0.4722	5E-6		0.0238733	NR unit increase	Illumina [560351]	N
1023	chr19	57474119	57474120	rs7257519	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	19q13.43	NR	rs7257519-A	0.4722	8E-6		0.0670852	NR unit increase	Illumina [560351]	N
1023	chr19	57488422	57488423	rs8102873	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	19q13.43	ZIM2	rs8102873-C	0.415088	9E-10		0.0123707	[0.0084-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
1023	chr19	57488422	57488423	rs8102873	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	19q13.43	ZIM2	rs8102873-C	0.415346	1E-8		0.0109694	[0.0072-0.0148] unit increase	Affymetrix [NR] (imputed)	N
1023	chr19	57515402	57515403	rs11671324	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	19q13.43	NR	rs11671324-T	0.9187	8E-7		0.0343	[0.021-0.048] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1024	chr19	57564713	57564714	rs73622127	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Succiniclasticum abundance in stool	5,959 Finnish ancestry individuals	NA	19q13.43		rs73622127-A	0.0243779	2E-8		0.12282	[0.08-0.166] unit increase	Illumina [7980478] (imputed)	N
1024	chr19	57579076	57579077	rs9676308	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	19q13.43	Intergenic	rs9676308-?		9E-6		1.643	[NR]	Affymetrix [492217] (imputed)	N
1024	chr19	57582182	57582183	rs35288347	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	19q13.43	NR	rs35288347-?		3E-6		2.15	[NR]	Illumina [NR] (imputed)	N
1024	chr19	57670246	57670247	rs111255834	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	19q13.43	DUXA	rs111255834-A	0.0148896218426937	2E-7	(F_Desulfovibrionaceae_HB)	1.21458	[0.76-1.67] unit decrease	Illumina [7711310] (imputed)	N
1025	chr19	57678193	57678194	rs11672517	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	19q13.43	DUXA, ZIM3, ZNF264	rs11672517-A	0.284	2E-17		1.341	[1.254-1.435]	Illumina [238825]	N
1025	chr19	57678193	57678194	rs11672517	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	19q13.43	DUXA, ZNF264	rs11672517-A	0.28	7E-14		1.34	[1.25-1.45]	Illumina [234939]	N
1025	chr19	57693937	57693938	rs11670527	31498392	Kusic DM	2019-09-09	Mil Med	rs11670527 Upstream of ZNF264 Associated with Body Mass Index in the Coriell Personalized Medicine Collaborative.	Body mass index	4,822 European ancestry individuals, 429 African American, Asian, Native Hawaiian/other Pacific Islander, Native American/Alaska native or unknown ancestry individuals	NA	19q13.43	ZNF264	rs11670527-?		2E-9				Affymetrix [232536]	N
1025	chr19	57760017	57760018	rs2014572	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	19q13.43	LOC390980	rs2014572-?	NR	7E-6	(count)			Perlegen [429981]	N
1025	chr19	57799617	57799618	rs10407062	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.43	ZNF460	rs10407062-T	0.545737	3E-13		0.0136036	[0.0099-0.0173] unit increase	NR [13737936] (imputed)	N
1025	chr19	57799617	57799618	rs10407062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.43		rs10407062-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1025	chr19	57799617	57799618	rs10407062	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	19q13.43		rs10407062-?	NR	3E-13		0.0148725	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1026	chr19	57802910	57802911	rs36032958	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	19q13.43	NR	rs36032958-?	NR	5E-6	(AA)	1.1962	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1026	chr19	57804718	57804719	rs12459174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.43		rs12459174-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1026	chr19	57835251	57835252	rs4801216	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 5 levels	21,758 European ancestry individuals	9,173 individuals	19q13.43		rs4801216-T	0.6	1E-13		0.083	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1026	chr19	57865081	57865082	rs862703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.43		rs862703-C	NR	5E-8		0.0135	[0.0086-0.0184] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1026	chr19	57868878	57868879	rs34411126	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		19q13.43	ZNF304	rs34411126-C	0.166266	9E-7		0.508981	[0.31-0.71] unit decrease	Illumina [640625] (imputed)	N
1026	chr19	57887747	57887748	rs189508091	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		19q13.43	ZNF547	rs189508091-?		6E-6				Affymetrix [7000000] (imputed)	N
1026	chr19	57908944	57908945	rs55706256	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	19q13.43	AC003002.1	rs55706256-T	0.3783	9E-13		0.014	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1026	chr19	57908944	57908945	rs55706256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.43		rs55706256-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1027	chr19	58017361	58017362	rs2005684	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	19q13.43	ZNF773	rs2005684-?		8E-6				Illumina [4322238] (imputed)	N
1027	chr19	58058535	58058536	rs1548476	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	19q13.43	NR	rs1548476-A	0.425928	1E-8		0.0178925	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
1028	chr19	58132105	58132106	rs34034473	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	19q13.43	ZNF134	rs34034473-C	0.05008	6E-9		2.383	[2.08-2.68]	Illumina [281811]	N
1028	chr19	58141280	58141281	rs10410869	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	19q13.43	ZNF211	rs10410869-T	NR	3E-11		0.0398117	[0.027-0.053] unit decrease	Affymetrix [16832071] (imputed)	N
1028	chr19	58142435	58142436	rs9749111	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.43		rs9749111-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1028	chr19	58143945	58143946	rs571658566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs571658566-A	0.140067	2E-25				Affymetrix, Illumina [22063850] (imputed)	N
1028	chr19	58143945	58143946	rs571658566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.43	NR	rs571658566-A	0.136494	7E-28		0.031376	[0.026-0.037] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1028	chr19	58143945	58143946	rs571658566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	19q13.43	ZNF211	rs571658566-A	0.1348	3E-12		0.03670471	[0.026-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1028	chr19	58144255	58144256	rs56340041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	19q13.43	ZNF211	rs56340041-A	0.146277	5E-19		0.028384874	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1028	chr19	58148662	58148662	rs538834286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	19q13.43	ZNF211	rs538834286-GT	0.143642	2E-20		0.02952356	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1028	chr19	58154824	58154825	rs10408464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.43	ZNF211	rs10408464-G	0.157343	1E-14		0.023747444	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1029	chr19	58202663	58202664	rs151177047	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	19q13.43	ZNF551	rs151177047-A	0.0653	3E-7	(Subset)	0.2376	[0.15-0.33] unit decrease	Illumina [up to 38043574] (imputed)	N
1029	chr19	58211529	58211530	rs10419113	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	19q13.43	NR	rs10419113-G	0.483	4E-6	(Males)	0.231186	[0.13-0.33] unit increase	Illumina [~ 6600000] (imputed)	N
1029	chr19	58213742	58213743	rs74939505	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	19q13.43	NR	rs74939505-A	0.01045	8E-15	(PRSS1)	0.2387	NR unit increase	Illumina [1671387] (imputed)	N
1029	chr19	58227638	58227639	rs1966325	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	19q13.43	ZNF551	rs1966325-T	NR	2E-6	(adjusted for clinical variables)			Illumina [up to 3923932] (imputed)	N
1029	chr19	58249642	58249643	rs12973620	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	19q13.43	ZNF776	rs12973620-?	NR	5E-8	(Latino)	1.56	[1.40-1.72]	Affymetrix, Illumina [NR] (imputed)	N
1029	chr19	58276084	58276085	rs114927288	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	19q13.43	ZNF587	rs114927288-?	NR	4E-6		0.213	[0.12-0.31] unit increase	Illumina [at least 13000000] (imputed)	N
1030	chr19	58332314	58332315	rs16988208	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.43	NR	rs16988208-G	0.16373000000000004	2E-10		0.00692175	[0.0047-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
1030	chr19	58332314	58332315	rs16988208	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.43	NR	rs16988208-G	0.16373000000000004	5E-7		0.00638352	[0.0039-0.0089] unit increase	Affymetrix [16582965] (imputed)	N
1030	chr19	58352805	58352806	rs35313547	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	19q13.43		rs35313547-?	NR	2E-8		0.0156789	[0.01-0.021] unit increase	NR [6912294] (imputed)	N
1030	chr19	58391475	58391476	rs144794875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	19q13.43	NR	rs144794875-G	0.14534800000000003	3E-9		0.00936103	[0.0061-0.0126] unit increase	Affymetrix [16582621] (imputed)	N
1030	chr19	58391475	58391476	rs144794875	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	19q13.43	NR	rs144794875-G	0.14534800000000003	7E-9		0.00965685	[0.0062-0.0132] unit increase	Affymetrix [16582614] (imputed)	N
1030	chr19	58412495	58412496	rs59711329	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	19q13.43	ZNF417	rs59711329-G	0.9039	1E-6	(AA)			Illumina [NR] (imputed)	N
1031	chr19	58469015	58469016	rs8106858	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	C19orf18	rs8106858-A	0.0050	9E-6	(Birth weight )	0.02	[NR] kg increase	Illumina [899892]	N
1031	chr19	58475453	58475454	rs499754	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	19q13.43	C19orf18	rs499754-G	NR	8E-6	(adjusted for subcutaneous fat)	0.262	[0.15-0.38] unit decrease	Illumina [8511049] (imputed)	N
1031	chr19	58486852	58486853	rs257677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.43		rs257677-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1031	chr19	58526203	58526204	rs149401382	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	19q13.43		rs149401382-A	0.009974	1E-9		2.5043826	NR	Affymetrix [7846216] (imputed)	N
1031	chr19	58536648	58536649	rs159868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	19q13.43		rs159868-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1032	chr19	58651295	58651296	rs34503352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs34503352-G	NR	1E-7		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58651295	58651296	rs34503352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs34503352-G	0.836	1E-7	(EA)	0.033	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58651295	58651296	rs34503352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs34503352-G	NR	3E-10		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58651295	58651296	rs34503352	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs34503352-G	0.836	7E-10	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58662234	58662235	rs35081008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	19q13.43		rs35081008-T	NR	6E-21		0.0309	[0.024-0.037] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1032	chr19	58662234	58662235	rs35081008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	19q13.43		rs35081008-T	NR	2E-25		0.0349	[0.028-0.041] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1032	chr19	58662234	58662235	rs35081008	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	19q13.43	NR	rs35081008-C	0.852153	9E-35		0.0322757	[0.027-0.037] unit increase	Affymetrix [15000001]	N
1032	chr19	58662234	58662235	rs35081008	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	19q13.43	ZNF329	rs35081008-C	0.851893	1E-27		0.0319653	[0.026-0.038] unit increase	Affymetrix [NR] (imputed)	N
1032	chr19	58662234	58662235	rs35081008	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	19q13.43	ZNF329	rs35081008-C	0.851863	6E-27		0.0311931	[0.026-0.037] unit increase	Affymetrix [NR] (imputed)	N
1032	chr19	58662234	58662235	rs35081008	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	19q13.43	ZNF329	rs35081008-?	NR	3E-23		0.0351	[0.029-0.041] unit decrease	Affymetrix [5701386] (imputed)	N
1032	chr19	58671266	58671267	rs12983728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs12983728-G	NR	2E-7		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58671266	58671267	rs12983728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs12983728-G	0.838	2E-7	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58671266	58671267	rs12983728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs12983728-G	NR	7E-10		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58671266	58671267	rs12983728	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs12983728-G	0.838	2E-9	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58671266	58671267	rs12983728	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	19q13.43	ZNF274	rs12983728-A	0.16	5E-8		0.046	[0.03-0.062] s.d. decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1032	chr19	58681860	58681861	rs117492019	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	19q13.43	intergenic	rs117492019-T	0.1756	1E-8		0.0216	[0.014-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1032	chr19	58681860	58681861	rs117492019	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs117492019-G	NR	8E-7		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58681860	58681861	rs117492019	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	19q13.43	NR	rs117492019-G	0.809	1E-6	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1032	chr19	58681860	58681861	rs117492019	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	19q13.43	ZNF274	rs117492019-T	0.19	1E-8		0.047	[0.031-0.063] s.d. decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1032	chr19	58714234	58714235	rs12151036	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	19q13.43	ZNF274	rs12151036-G	0.0119	5E-6		2.2075055	[1.57-3.11]	Illumina [7521072] (imputed)	N
1032	chr19	58716362	58716363	rs7248512	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	19q13.43		rs7248512-T	0.51	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1033	chr19	58770882	58770883	rs260461	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	19q13.43	ZNF544	rs260461-?	NR	8E-6	(binary)			Perlegen [429981]	N
1034	chr19	58898962	58898963	rs734380	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	19q13.43	RPS5	rs734380-C	0.46	9E-6	(male)	0.273	[0.15-0.39] unit decrease	Illumina [6380737] (imputed)	N
1034	chr19	58913443	58913444	rs4801582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	19q13.43		rs4801582-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1034	chr19	58919556	58919557	rs34188294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	19q13.43	CTD-2619J13.14	rs34188294-A	0.208371	2E-16		0.022842577	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1034	chr19	58926344	58926345	rs35782676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs35782676-T	0.779153	1E-17				Affymetrix, Illumina [17210439] (imputed)	N
1034	chr19	58926344	58926345	rs35782676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	19q13.43	NR	rs35782676-T	0.77544	4E-21		0.021775	[0.017-0.026] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1034	chr19	58926344	58926345	rs35782676	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	19q13.43	NR	rs35782676-T	0.77	4E-6		1.13	[1.07-1.19]	Illumina [~ 1113287] (imputed)	N
1034	chr19	58928301	58928302	rs10423138	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Uric acid clearance	768 Hispanic children from 260 families		19q13.43	ZNF584	rs10423138-G	0.31	1E-6		0.29	[0.15-0.43] unit increase	Illumina [899892]	N
1034	chr19	58929051	58929052	rs3764535	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	19q13.43		rs3764535-G	0.517	3E-12				Affymetrix [10369434] (imputed)	N
1034	chr19	58931556	58931557	rs9304813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	19q13.43	NR	rs9304813-G	0.482771	2E-24		0.018721	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1034	chr19	58931895	58931896	rs34548043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	19q13.43	CTD-2619J13.16, ZNF584	rs34548043-T	0.483582	1E-20		0.020973329	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1034	chr19	58951692	58951693	rs11084545	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	19q13.43		rs11084545-C	NR	7E-18		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1034	chr19	58951692	58951693	rs11084545	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs11084545-C	0.476902	9E-24				Affymetrix, Illumina [24588908] (imputed)	N
1034	chr19	58953397	58953398	rs4801589	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	19q13.43	CTD-2619J13.19	rs4801589-G	0.48083	2E-13		0.016569031	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1034	chr19	58963529	58963530	rs11671005	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	19q13.43	ZNF324B	rs11671005-A	0.2583	1E-10		0.02721352	[0.019-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1034	chr19	58972251	58972252	rs4801593	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	19q13.43		rs4801593-T	NR	5E-8		0.020071033	[0.013-0.027] years increase	NR [7400000] (imputed)	N
1034	chr19	58973928	58973929	rs2889128	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	19q13.43		rs2889128-A	NR	5E-6		0.00508679	[0.0029-0.0073] years increase	NR [7400000] (imputed)	N
1035	chr19	58991478	58991479	rs882609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	19q13.43		rs882609-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1035	chr19	58992000	58992001	rs58632700	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	19q13.43	ZNF446	rs58632700-A	0.077	1E-7	(Free T3 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
1035	chr19	58993993	58993994	rs75814085	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SLC27A5	rs75814085-?	NR	1E-6	(male)	0.889049	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1035	chr19	58999349	58999350	rs2033711	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Uric acid clearance	768 Hispanic children from 260 families		19q13.43	ZNF446	rs2033711-G	0.3	8E-8		0.32	[0.20-0.44] unit increase	Illumina [899892]	N
1035	chr19	59003631	59003632	rs11668201	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	19q13.43	NR	rs11668201-T	0.18993300000000002	1E-8		0.00858365	[0.0055-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
1035	chr19	59003631	59003632	rs11668201	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	19q13.43	NR	rs11668201-T	0.18993300000000002	2E-7		0.00881651	[0.0052-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
1035	chr19	59008212	59008213	rs73066226	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	19q13.43	SLC27A5	rs73066226-T	0.836882	2E-9		0.0151288	[0.01-0.02] unit decrease	NR [13737936] (imputed)	N
1035	chr19	59008212	59008213	rs73066226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	19q13.43		rs73066226-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1035	chr19	59013195	59013196	rs73066228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	19q13.43		rs73066228-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1035	chr19	59017416	59017417	rs11486499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	19q13.43	SLC27A5	rs11486499-G	0.424966	2E-11		0.015332393	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1035	chr19	59028584	59028585	rs11545185	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	19q13.43		rs11545185-G	0.21	5E-6				Illumina [6724284] (imputed)	N
1035	chr19	59028584	59028585	rs11545185	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	19q13.43	NR	rs11545185-A	0.17114700000000005	2E-16		0.00871193	[0.0065-0.0109] unit increase	Affymetrix [16582909] (imputed)	N
1035	chr19	59028584	59028585	rs11545185	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	19q13.43	NR	rs11545185-A	0.17114700000000005	2E-14		0.00883817	[0.0064-0.0113] unit increase	Affymetrix [16582965] (imputed)	N
1035	chr19	59035588	59035589	rs113742427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	19q13.43	Intergenic	rs113742427-T	0.2868	1E-9	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr19	59035588	59035589	rs113742427	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	19q13.43	NR	rs113742427-?	NR	2E-6		4.802	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1035	chr19	59040184	59040185	rs180914272	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	19q13.43	NR	rs180914272-T	0.011	3E-6		0.6835	[0.4-0.97] unit increase	Illumina [10677593] (imputed)	N
1035	chr19	59041722	59041723	rs7253433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	19q13.43	Intergenic	rs7253433-A	0.3254	1E-13	(MTAG)	0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr19	59041722	59041723	rs7253433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	19q13.43	Intergenic	rs7253433-A	0.3255	5E-9	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1035	chr19	59050872	59050873	rs4801605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	19q13.43	Intergenic	rs4801605-T	0.6801	3E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1035	chr19	59062258	59062259	rs11669345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	19q13.43	UBE2M, CHMP2A, TRIM28	rs11669345-T	0.178906	8E-10		0.017606635	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1035	chr19	59079095	59079096	rs73068325	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	19q13.43	NR	rs73068325-T	0.1815	4E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
1035	chr19	59090262	59090263	rs73068339	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	19q13.43	NR	rs73068339-C	NR	6E-10		6.192	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1035	chr19	59093238	59093239	rs10448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	19q13.43	NR	rs10448-T	0.471751	5E-10				Affymetrix, Illumina [22063850] (imputed)	N
1035	chr19	59093238	59093239	rs10448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	19q13.43	NR	rs10448-T	0.470202	2E-11		0.012664	[0.009-0.0164] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1035	chr19	59093238	59093239	rs10448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	19q13.43		rs10448-?	NR	3E-8				NR [~ 8900000] (imputed)	N
585	chr2	38937	38938	rs11542478	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	2p25.3	FAM110C	rs11542478-A	0.10	9E-6	(4-choice RT)	0.19	[0.11-0.27] unit increase	Illumina [~ 610000]	N
585	chr2	112495	112496	rs300774	21423239	Willour VL	2011-03-25	Mol Psychiatry	A genome-wide association study of attempted suicide.	Suicide attempts in bipolar disorder	1,201 European and unknown ancestry attempters, 1,497 European and unknown ancestry non-attempters	1,295 attempters, 1,822 non-attempters	2p25.3	intergenic	rs300774-A	0.18	5E-8		1.22	[NR]	Affymetrix, Illumina [2408051] (imputed)	N
586	chr2	173601	173602	rs56285383	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2p25.3		rs56285383-T	0.31236	3E-6		0.034331	[0.02-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
586	chr2	184389	184390	rs13033859	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	2p25.3	SH3YL1	rs13033859-?	NR	4E-6			[NR]	Illumina [283437]	N
586	chr2	209062	209063	rs300751	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p25.3	FAM110C, SH3YL1, ACP1, FAM150B, TMEM18, SNTG2, PXDN	rs300751-?		6E-25				Affymetrix, Illumina [NR] (imputed)	N
586	chr2	224918	224919	rs2290911	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	2p25.3	NR	rs2290911-G	0.341047341973023	5E-7				NR [9276018] (imputed)	N
586	chr2	224918	224919	rs2290911	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	2p25.3	SH3YL1	rs2290911-G	0.34	6E-6		1.14	[1.07-1.21]	Illumina [92772]	N
586	chr2	226932	226933	rs3791221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p25.3		rs3791221-G	NR	7E-26		0.0253	[0.021-0.03] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
586	chr2	226932	226933	rs3791221	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p25.3	SH3YL1	rs3791221-A	0.6714	1E-11	(discovery)	0.0022	[0.0016-0.0028] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
586	chr2	226932	226933	rs3791221	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p25.3	SH3YL1	rs3791221-A	0.6487	2E-10		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
586	chr2	226932	226933	rs3791221	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2p25.3	SH3YL1	rs3791221-A	0.6714	2E-7		0.0038	[0.0024-0.0052] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
586	chr2	233415	233416	rs300756	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	SH3YL1, FAM150B, ACP1	rs300756-A	0.1733668	3E-19	(Low molecular weight phosphotyrosine protein phosphatase)	0.5196	[0.41-0.63] unit decrease	Affymetrix [509946]	N
586	chr2	234670	234670	rs10654359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p25.3		rs10654359-AAC	NR	1E-14		0.0109	[0.0082-0.0136] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
586	chr2	239415	239416	rs300703	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	SH3YL1, AC079779.7, AC079779.4, ACP1, FAM150B	rs300703-C	0.09939759	4E-11	(EA, Low molecular weight phosphotyrosine protein phosphatase)	0.4914	[0.35-0.64] unit decrease	Affymetrix [509946]	N
586	chr2	239596	239597	rs6710091	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p25.3	NR	rs6710091-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
586	chr2	239596	239597	rs6710091	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p25.3	SH3YL1	rs6710091-C	0.686	5E-8		0.0165	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
586	chr2	242792	242793	rs62114506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p25.3		rs62114506-C	NR	3E-14		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
586	chr2	242792	242793	rs62114506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p25.3	SH3YL1	rs62114506-G	0.737908	3E-10		0.0140515	[0.0097-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
586	chr2	243928	243929	rs55753056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.3		rs55753056-?	NR	2E-22				NR [~ 8900000] (imputed)	N
586	chr2	244565	244568	rs386642118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p25.3	SH3YL1	rs386642118-A	NR	2E-12		0.0239833	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
586	chr2	244565	244568	rs386642118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p25.3	SH3YL1	rs386642118-A	NR	3E-9		0.0202144	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
586	chr2	249091	249092	rs17713729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p25.3		rs17713729-C	NR	4E-14		0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
586	chr2	249091	249092	rs17713729	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs17713729-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
586	chr2	254214	254215	rs17713879	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	NR	rs17713879-?	NR	2E-215	(EA, Low molecular weight phosphotyrosine protein phosphatase)			Affymetrix [509946]	N
587	chr2	264018	264019	rs7595075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p25.3		rs7595075-A	NR	3E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
587	chr2	264018	264019	rs7595075	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p25.3	SH3YL1	rs7595075-A	NR	2E-9		0.0193466	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
587	chr2	264018	264019	rs7595075	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p25.3	SH3YL1	rs7595075-C	0.653208	6E-13		0.0144373	[0.011-0.018] unit decrease	Affymetrix [NR] (imputed)	N
587	chr2	264620	264621	rs114976176	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p25.3	NR	rs114976176-C	0.351571	6E-9	(Conditioned on chr2:417167, chr2:624205)	0.015513658	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
587	chr2	267366	267367	rs58461606	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p25.3	ACP1	rs58461606-G	0.6390625	6E-657	(ACP1, 3858_5_1)	1.1336924	[1.1-1.17] unit decrease	Illumina [> 1000000] (imputed)	N
587	chr2	271796	271797	rs59937473	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	2p25.3	NR	rs59937473-?	NR	3E-67	(PPAC)			Illumina [~ 4000000] (imputed)	N
587	chr2	271796	271797	rs59937473	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p25.3	NR	rs59937473-A	0.349	2E-7		0.00590285	[0.0037-0.0081] unit decrease	NR [9732723] (imputed)	N
587	chr2	272202	272203	rs11553746	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	2p25.3	NR	rs11553746-T	NR	7E-15		0.015085096	[0.011-0.019] unit increase	Illumina [242289]	N
587	chr2	272202	272203	rs11553746	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	2p25.3	NR	rs11553746-T	0.35	2E-7		0.016	unit increase	Illumina [242289]	N
587	chr2	272202	272203	rs11553746	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	2p25.3	ACP1	rs11553746-T	0.35	4E-6		1.14	[1.07-1.21]	Illumina [92772]	N
587	chr2	272202	272203	rs11553746	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	ACP1, SH3YL1, FAM150B, AC079779.4	rs11553746-T	0.3247992	1E-257	(Low molecular weight phosphotyrosine protein phosphatase)	1.237	[1.19-1.29] unit increase	Affymetrix [509946]	N
587	chr2	274671	274672	rs62114548	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2p25.3		rs62114548-G	0.3464	2E-9		0.04284	[0.029-0.057] unit decrease	Affymetrix [15580782] (imputed)	N
587	chr2	276345	276346	rs4452185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p25.3	NR	rs4452185-C	NR	7E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr2	276345	276346	rs4452185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p25.3	NR	rs4452185-C	NR	5E-12		0.0174	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
587	chr2	277002	277003	rs79716074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p25.3	ACP1	rs79716074-G	0.351345	1E-9		0.01427798	[0.0097-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
587	chr2	277002	277003	rs79716074	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	ACP1	rs79716074-G	0.337	1E-1095	(Low molecular weight phosphotyrosine protein phosphatase, ACP1.3858.5.1)	1.16	[1.12-1.2] unit increase	Affymetrix [10572788] (imputed)	N
587	chr2	285470	285471	rs17714252	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2p25.3		rs17714252-A	0.34453	2E-7		0.036975	[0.023-0.051] unit decrease	Affymetrix [15580782] (imputed)	N
587	chr2	285470	285471	rs17714252	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	2p25.3	NR	rs17714252-A	NR	5E-9	(Low molecular weight phosphotyrosine protein phosphatase)			Illumina [514227]	N
587	chr2	286755	286756	rs60843830	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2p25.3	LOC101927262	rs60843830-C	0.6638	7E-10		0.012652628	[0.0086-0.0167] unit increase	Illumina [9339358] (imputed)	N
587	chr2	286755	286756	rs60843830	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	2p25.3	FAM150B-ACP1	rs60843830-C	0.66	4E-8	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
587	chr2	286755	286756	rs60843830	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	2p25.3	FAM150B-ACP1	rs60843830-C	0.66	1E-9				Affymetrix, Illumina [up to 7331415] (imputed)	N
587	chr2	292752	292753	rs12477065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs12477065-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
587	chr2	292752	292753	rs12477065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.3		rs12477065-?	NR	2E-11				NR [~ 8900000] (imputed)	N
587	chr2	293687	293688	rs79154857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p25.3		rs79154857-C	NR	5E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
587	chr2	294196	294197	rs59578880	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs59578880-A	0.099	3E-105	(Low molecular weight phosphotyrosine protein phosphatase, ACP1.3858.5.1)	0.99	[0.89-1.09] unit increase	Affymetrix [10572788] (imputed)	N
587	chr2	300605	300606	rs7598301	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2p25.3	NR	rs7598301-?	NR	3E-6		0.0969361	[0.056-0.138] unit increase	NR [13958389] (imputed)	N
587	chr2	301050	301051	rs6753137	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p25.3	FAM150B, TMEM18	rs6753137-T	0.4556	2E-10		6.39	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
587	chr2	305573	305573	rs202069737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p25.3	AC079779.5	rs202069737-C	NR	2E-8		0.0214208	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
587	chr2	306687	306687	rs553864359	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs553864359-TACAC	0.595	5E-83	(Low molecular weight phosphotyrosine protein phosphatase, ACP1.3858.5.1)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
587	chr2	306837	306838	rs10194211	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs10194211-C	0.388	1E-276	(Low molecular weight phosphotyrosine protein phosphatase, ACP1.3858.5.1)	0.85	[0.81-0.89] unit increase	Affymetrix [10572788] (imputed)	N
587	chr2	309096	309097	rs12475664	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	RP11-356M6.1, AC079779.5	rs12475664-A	0.3555556	5E-16	(EA, Low molecular weight phosphotyrosine protein phosphatase)	0.3741	[0.29-0.46] unit increase	Affymetrix [509946]	N
587	chr2	315214	315215	rs4643574	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	2p25.3	AC079779.6	rs4643574-?	NR	5E-6	(Digit Span Forward)			Illumina [up to 563855]	N
587	chr2	319567	319568	rs115994740	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2p25.3	NR	rs115994740-A	0.9581	6E-7		2.601	[1.58-3.62] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
587	chr2	319567	319568	rs115994740	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	2p25.3	NR	rs115994740-A	0.9581	6E-7		2.601	[1.58-3.62] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
587	chr2	349132	349133	rs907300	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	AC079779.6	rs907300-T	0.4776	8E-6		0.0302	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
587	chr2	350615	350616	rs10185853	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10185853-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
587	chr2	365785	365786	rs74535542	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		2p25.3	NR	rs74535542-G	NR	8E-6		0.706502	[0.4-1.02] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
587	chr2	374708	374709	rs150411716	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p25.3	Intergenic	rs150411716-T	0.999	3E-6	(AA)	1.69	NR unit increase	Illumina [NR] (imputed)	N
587	chr2	381283	381284	rs116554435	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p25.3	Intergenic	rs116554435-G	0.999	2E-6	(AA)	1.686	NR unit increase	Illumina [NR] (imputed)	N
587	chr2	386911	386912	rs28405493	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p25.3	AC105393.1, FAM150B, ACP1, SH3YL1	rs28405493-C	NR	5E-6	(sleep duration)	0.2221	[0.13-0.32] unit increase	Affymetrix [7141204] (imputed)	N
588	chr2	402342	402343	rs6548230	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p25.3	intergenic	rs6548230-C	NR	4E-6	(EA)			Illumina [up to 11995908] (imputed)	N
588	chr2	406822	406823	rs62106251	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p25.3	intergenic	rs62106251-T	NR	8E-6		0.2080028	[0.12-0.3] unit increase	Illumina [> 6200000] (imputed)	N
588	chr2	407712	407713	rs75960650	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs75960650-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
588	chr2	407712	407713	rs75960650	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	AC105393.1	rs75960650-A	0.9927	2E-6		0.2284	[0.13-0.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr2	408712	408713	rs62106252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p25.3		rs62106252-G	0.951376	2E-8		0.0533507	[0.035-0.072] unit increase	NR [11722792] (imputed)	N
588	chr2	408712	408713	rs62106252	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	2p25.3	intergenic	rs62106252-?	NR	1E-9		0.0360146	[0.024-0.048] unit increase	Affymetrix [25921788] (imputed)	N
588	chr2	409111	409112	rs7582535	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs7582535-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
588	chr2	417166	417167	rs62106258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p25.3		rs62106258-C	NR	5E-13		0.0342	[0.025-0.043] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
588	chr2	417166	417167	rs62106258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p25.3	NR	rs62106258-C	NR	7E-13		0.0404	[0.029-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
588	chr2	417166	417167	rs62106258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p25.3	NR	rs62106258-C	NR	5E-13		0.0407	[0.03-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
588	chr2	417166	417167	rs62106258	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p25.3	AC105393.1	rs62106258-T	0.9514	4E-33		0.0511	[0.043-0.06] unit increase	Affymetrix [18391927] (imputed)	N
588	chr2	417166	417167	rs62106258	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p25.3	FAM150B	rs62106258-T	0.951459	4E-134		0.0802051	[0.074-0.087] unit increase	Affymetrix [12370749]	N
588	chr2	417166	417167	rs62106258	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p25.3	intergenic	rs62106258-?	NR	1E-10		0.0362759	[0.025-0.047] unit decrease	Affymetrix [25921788] (imputed)	N
588	chr2	417166	417167	rs62106258	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p25.3	intergenic	rs62106258-?	NR	2E-11		0.0379499	[0.027-0.049] unit increase	Affymetrix [25921788] (imputed)	N
588	chr2	417166	417167	rs62106258	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p25.3	NR	rs62106258-T	0.951702	5E-11		0.032221	[0.023-0.042] unit increase	NR [NR]	N
588	chr2	417166	417167	rs62106258	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p25.3	NR	rs62106258-C	0.0486327	8E-9		0.0897489	[0.059-0.121] unit decrease	Affymetrix [17914406] (imputed)	N
588	chr2	417166	417167	rs62106258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs62106258-?	NR	3E-100				Affymetrix [~ 8270000] (imputed)	N
588	chr2	417166	417167	rs62106258	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p25.3	NR	rs62106258-C	0.04854	1E-40		0.076900385	[0.066-0.088] unit decrease	Affymetrix [10549349] (imputed)	N
588	chr2	417166	417167	rs62106258	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2p25.3	FAM150B	rs62106258-T	0.95	9E-12		0.042	[0.03-0.054] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
588	chr2	417166	417167	rs62106258	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2p25.3	FAM150B	rs62106258-T	0.95	1E-10		0.083	[0.058-0.108] unit increase	Affymetrix [at least 8900000] (imputed)	N
588	chr2	417166	417167	rs62106258	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p25.3	NR	rs62106258-C	0.0476	3E-16		0.0228154	[0.017-0.028] unit decrease	NR [9732723] (imputed)	N
588	chr2	417166	417167	rs62106258	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p25.3	NR	rs62106258-C	0.047329	3E-14	(Conditioned on chr2:624205)	0.04549801	[0.034-0.057] unit decrease	NR [~ 10000000] (imputed)	N
588	chr2	417166	417167	rs62106258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p25.3		rs62106258-?	NR	3E-41				NR [~ 8900000] (imputed)	N
588	chr2	417166	417167	rs62106258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.3		rs62106258-?	NR	2E-97				NR [~ 8900000] (imputed)	N
588	chr2	417166	417167	rs62106258	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62106258-?	NR	3E-13	(male)	0.58499	[0.43-0.74] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	417166	417167	rs62106258	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62106258-?	NR	2E-24		0.51833	[0.42-0.62] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	417166	417167	rs62106258	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62106258-?	NR	2E-14	(female)	0.4241	[0.32-0.53] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	417166	417167	rs62106258	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p25.3	NR	rs62106258-T	0.9534	9E-21		0.0434	[0.034-0.052] unit increase	NR [~ 27400000] (imputed)	N
588	chr2	417166	417167	rs62106258	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2p25.3	LINC01874	rs62106258-C	0.048	3E-14		0.006	[0.0046-0.0074] unit increase	Affymetrix [15275733] (imputed)	N
588	chr2	420442	420443	rs563738408	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p25.3	FAM150B	rs563738408-G	0.966108	7E-60		0.0635767	[0.056-0.071] unit increase	Affymetrix [12370749]	N
588	chr2	422143	422144	rs62107261	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	2p25.3	FAM150B	rs62107261-T	0.95	3E-7		0.118	[0.073-0.163] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
588	chr2	422143	422144	rs62107261	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p25.3	intergenic	rs62107261-?	NR	2E-8	(female)	0.0435786	[0.028-0.059] unit decrease	Affymetrix [25921788] (imputed)	N
588	chr2	422143	422144	rs62107261	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2p25.3	LINC01874	rs62107261-C	0.0482567	5E-9		0.089776	[0.059-0.12] unit decrease	Affymetrix [9463307] (imputed)	N
588	chr2	422143	422144	rs62107261	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	2p25.3	FAM150B	rs62107261-T	0.9338326	1E-15		1.65	[1.46-1.87]	Illumina [41266535] (imputed)	N
588	chr2	422143	422144	rs62107261	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs62107261-C	0.04782	3E-7		0.03319	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
588	chr2	422143	422144	rs62107261	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs62107261-C	0.04782	2E-8	(females)	0.04719	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
588	chr2	422143	422144	rs62107261	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs62107261-C	0.04782	5E-10	(males)	0.05549	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
588	chr2	422143	422144	rs62107261	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs62107261-C	0.04782	2E-38		0.07675	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
588	chr2	422143	422144	rs62107261	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs62107261-C	0.04782	1E-32	(females)	0.09445	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
588	chr2	422143	422144	rs62107261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p25.3		rs62107261-?	NR	4E-8				NR [~ 8900000] (imputed)	N
588	chr2	422143	422144	rs62107261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p25.3		rs62107261-?	NR	9E-11				NR [~ 8900000] (imputed)	N
588	chr2	422143	422144	rs62107261	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p25.3	TMEM18	rs62107261-T	0.9536	4E-12		1.12	[1.08-1.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
588	chr2	422143	422144	rs62107261	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p25.3	FAM150B	rs62107261-T	0.9518	8E-21		0.006	[0.0046-0.0074] unit decrease	Affymetrix [15275733] (imputed)	N
588	chr2	422143	422144	rs62107261	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	AC105393.2	rs62107261-T	0.9509	2E-6		0.0811	[0.048-0.114] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr2	422143	422144	rs62107261	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p25.3	AC105393.2	rs62107261-T	0.9515	3E-6		0.1012	[0.058-0.144] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr2	428628	428629	rs79975238	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	2p25.3	NR	rs79975238-C	0.9817	1E-8		3.0946	[2.03-4.16] unit decrease	Affymetrix, Illumina [12989038] (imputed)	N
588	chr2	430974	430975	rs77165542	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	2p25.3	ENSG00000226277	rs77165542-C	NR	5E-8		0.0081716	[0.0052-0.0111] unit increase	Affymetrix [18485882] (imputed)	N
588	chr2	430974	430975	rs77165542	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p25.3	NR	rs77165542-T	0.0349	6E-11		0.026010899	[0.018-0.034] unit decrease	NR [~ 10000000] (imputed)	N
588	chr2	434667	434668	rs12475496	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs12475496-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
588	chr2	442078	442079	rs3961049	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	AC105393.2	rs3961049-A	0.3545	2E-6		0.0315	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr2	442078	442079	rs3961049	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p25.3	AC105393.2	rs3961049-A	0.3515	5E-6		0.0384	[0.022-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
588	chr2	443280	443281	rs4854307	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	2p25.3	intergenic	rs4854307-C	0.34	2E-6		0.0263	[0.016-0.036] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
588	chr2	450233	450234	rs192754985	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs192754985-?	NR	1E-35				Affymetrix [~ 8270000] (imputed)	N
588	chr2	460675	460676	rs17714945	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p25.3	intergenic	rs17714945-A	NR	2E-6		0.15066223	[0.087-0.214] unit increase	Illumina [> 6200000] (imputed)	N
588	chr2	466002	466003	rs62104180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p25.3		rs62104180-A	NR	4E-9		0.0325	[0.022-0.043] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	4E-14				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	4E-44				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	2E-9				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	6E-45				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	1E-11				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	2p25.3	FAM150B	rs62104180-?	NR	4E-51				NR [5554549] (imputed)	N
588	chr2	466002	466003	rs62104180	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p25.3	FAM150B	rs62104180-G	0.95	5E-9		0.0199	[0.013-0.027] unit increase	Affymetrix [~ 7740000] (imputed)	N
588	chr2	466002	466003	rs62104180	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p25.3	NR	rs62104180-A	0.0489	9E-15		0.0249782	[0.019-0.031] unit decrease	NR [~ 9732723] (imputed)	N
588	chr2	466002	466003	rs62104180	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62104180-?	NR	3E-14		0.36454	[0.27-0.46] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	466002	466003	rs62104180	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62104180-?	NR	2E-9	(female)	0.46863	[0.32-0.62] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	466002	466003	rs62104180	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p25.3	NR	rs62104180-?	NR	2E-6	(male)	0.28169	[0.17-0.4] unit decrease	Affymetrix [7794483] (imputed)	N
588	chr2	477099	477100	rs2724862	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs2724862-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
588	chr2	499067	499068	rs2020092	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p25.3	intergenic	rs2020092-A	0.0523	8E-6		0.1585	[0.089-0.228] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
588	chr2	502267	502268	rs73146304	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	2p25.3	NR	rs73146304-?	NR	9E-6		0.5552	[0.3-0.81] unit increase	Illumina [at least 560000] (imputed)	N
589	chr2	555977	555978	rs60886478	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p25.3	NR	rs60886478-T	0.07226	3E-9		0.028412897	[0.019-0.038] unit decrease	Affymetrix [10549349] (imputed)	N
589	chr2	557122	557123	rs10192669	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10192669-?	NR	9E-18				Affymetrix [~ 8270000] (imputed)	N
589	chr2	574367	574368	rs10176391	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10176391-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
589	chr2	594365	594366	rs11885103	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	2p25.3	TMEM18	rs11885103-A	0.44	2E-6	(Right HG area)	9.74	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
589	chr2	595038	595039	rs28627463	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs28627463-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
589	chr2	597373	597374	rs114053538	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs114053538-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
589	chr2	597625	597626	rs10208700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10208700-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
589	chr2	598781	598782	rs10495481	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10495481-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
589	chr2	599280	599281	rs61360200	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs61360200-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
589	chr2	611143	611148	rs72284255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	AC093326.3	rs72284255-G	0.4922	5E-6		0.0306	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	611143	611148	rs72284255	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	AC093326.3	rs72284255-G	0.4922	5E-6		0.0306	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	613044	613044	rs201205097	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	2p25.3	FAM150B, TMEM18	rs201205097-?	NR	3E-15		0.044	[0.055-0.033] unit decrease	Illumina [12039492]	N
589	chr2	614167	614168	rs2947411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p25.3		rs2947411-G	0.902905	2E-20		0.0420342	[0.033-0.051] unit increase	Illumina [13479924] (imputed)	N
589	chr2	614167	614168	rs2947411	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2p25.3	TMEM18	rs2947411-G	0.83	5E-10		0.0189	[0.011-0.027] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
589	chr2	614167	614168	rs2947411	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2p25.3	TMEM18	rs2947411-A	0.17	2E-19		0.06	[0.046-0.074] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
589	chr2	614167	614168	rs2947411	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	2p25.3	TMEM18	rs2947411-A	0.17	2E-8		2.8	[1.82-3.78] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
589	chr2	615139	615140	rs7567570	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2p25.3	TMEM18	rs7567570-C	0.827	9E-12		0.0206	[0.015-0.027] unit increase	Illumina [~ 250000] (imputed)	N
589	chr2	615139	615140	rs7567570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p25.3		rs7567570-?	NR	7E-12				NR [~ 8900000] (imputed)	N
589	chr2	619640	619641	rs10153796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10153796-?	NR	3E-27				Affymetrix [~ 8270000] (imputed)	N
589	chr2	620296	620297	rs7563362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p25.3	NR	rs7563362-G	NR	8E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
589	chr2	620296	620297	rs7563362	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p25.3	intergenic	rs7563362-A	0.1434	3E-39		0.0352	[0.03-0.04] unit decrease	Affymetrix [18391927] (imputed)	N
589	chr2	620296	620297	rs7563362	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p25.3	NR	rs7563362-G	0.856307	7E-18		0.0831074	[0.064-0.102] unit increase	Affymetrix [17914406] (imputed)	N
589	chr2	620296	620297	rs7563362	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2p25.3	TMEM18	rs7563362-A	0.142333	1E-10		0.0613566	[0.043-0.08] unit decrease	Affymetrix [9463307] (imputed)	N
589	chr2	620296	620297	rs7563362	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p25.3	NR	rs7563362-G	0.855	5E-13		0.0159304	[0.012-0.02] unit increase	NR [9732723] (imputed)	N
589	chr2	621005	621006	rs6710140	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs6710140-?	NR	6E-20				Affymetrix [~ 8270000] (imputed)	N
589	chr2	621114	621115	rs10180960	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs10180960-?	NR	4E-28				Affymetrix [~ 8270000] (imputed)	N
589	chr2	621253	621254	rs10185713	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p25.3	AC093326.3	rs10185713-A	0.8004	6E-6		0.0456	[0.026-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	621460	621461	rs6548237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p25.3	NA	rs6548237-A	0.161	2E-158		0.057	[0.053-0.061] unit decrease	NR [~ 27400000] (imputed)	N
589	chr2	621557	621558	rs939584	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	2p25.3	TMEM18	rs939584-T	0.83	9E-26		0.107	[0.087-0.127] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
589	chr2	621557	621558	rs939584	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p25.3	FAM150B, TMEM18	rs939584-T	0.897	6E-23	(Japanese)	0.056	[0.044-0.068] unit increase	Illumina [6108953] (imputed)	N
589	chr2	621602	621602	rs5828773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p25.3		rs5828773-GT	NR	2E-12		0.0186	[0.014-0.024] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
589	chr2	621602	621602	rs5828773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p25.3		rs5828773-GT	NR	1E-9		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
589	chr2	621603	621603	rs34686587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	AC093326.3	rs34686587-G	0.1863	6E-13		0.0623	[0.045-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	621603	621603	rs34686587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	AC093326.3	rs34686587-G	0.1863	6E-13		0.0623	[0.045-0.079] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	622224	622225	rs1320330	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p25.3	TMEM18	rs1320330-T	0.17168	1E-10		0.0178233	[0.012-0.023] unit increase	NR [16516521] (imputed)	N
589	chr2	622224	622225	rs1320330	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p25.3	AC093326.3	rs1320330-T	0.1777	2E-10		0.0669	[0.046-0.087] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	622224	622225	rs1320330	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p25.3	AC093326.3	rs1320330-T	0.1782	4E-15		0.0659	[0.049-0.082] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	622381	622382	rs6723832	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	2p25.3	AC093326.3	rs6723832-C	NR	5E-6		0.97	[0.957- 0.982]	Illumina [6740241] (imputed)	N
589	chr2	622387	622388	rs6760543	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Body mass index	4,658 Korean ancestry females	5,295 Korean ancestry females	2p25.3	NR	rs6760543-G	0.09	5E-7		0.432	[0.26-0.6] unit decrease	Affymetrix [NR] (imputed)	N
589	chr2	622530	622531	rs939583	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs939583-?	NR	5E-12		0.06792878	[0.049-0.087] unit increase	Illumina [32062178] (imputed)	N
589	chr2	622530	622531	rs939583	24064335	Pei YF	2013-10-08	Hum Mol Genet	Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity.	Body mass index	8,463 European ancestry individuals, 7,478 African American individuals, 3,348 Hispanic individuals, 1,624 Han Chinese ancestry individuals	4,979 European ancestry individuals, 2,740 Han Chinese ancestry individuals	2p25.3	TMEM18	rs939583-C	NR	1E-7		0.07	[0.050-0.090] kg/m2 decrease	Affymetrix, Illumina [4325550] (imputed)	N
589	chr2	622826	622827	rs2867125	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs2867125-?	NR	2E-12		0.06765402	[0.049-0.087] unit increase	Illumina [32062178] (imputed)	N
589	chr2	622826	622827	rs2867125	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2p25.3	TMEM18	rs2867125-T	0.172175281510457	4E-10		0.0601	[0.041-0.079] unit decrease	NR [5035015] (imputed)	N
589	chr2	622826	622827	rs2867125	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p25.3	TMEM18	rs2867125-C	0.83	2E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8305	7E-11	(women)	0.0836	[0.059-0.109] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8279	2E-8	(EA, men)	0.0919	[0.06-0.124] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.827	7E-17	(EA)	0.0876	[0.067-0.108] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8262	3E-10	(EA, women)	0.0859	[0.059-0.113] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8282	1E-26	(women)	0.0707	[0.058-0.084] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8276	7E-36		0.0664	[0.056-0.077] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8263	2E-14	(men)	0.0616	[0.046-0.077] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8261000000000001	2E-8	(EA, men)	0.0635	[0.041-0.086] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8253	1E-33	(EA)	0.0667	[0.056-0.077] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8244	2E-24	(EA,women)	0.0717	[0.058-0.085] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-?	NR	9E-48	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-?	NR	7E-35	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-?	NR	5E-52				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-?	NR	5E-32	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-?	NR	2E-14	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8276	4E-33	(women)	0.0728	[0.061-0.085] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8276	1E-49		0.0702	[0.061-0.079] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8253	5E-45	(EA)	0.0704	[0.061-0.08] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8253	5E-19	(EA, men)	0.0666	[0.052-0.081] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs2867125-C	0.8253	1E-31	(EA, women)	0.0737	[0.061-0.086] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	622826	622827	rs2867125	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	2p25.3	TMEM18, ACP1, FAM150B, SH3YL1, SNTG2, LOC339822	rs2867125-C	0.83	5E-75				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	622826	622827	rs2867125	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x age interaction	up to 112,279 European ancestry individuals aged <50, up to 197,610 European ancestry individuals aged >50	NA	2p25.3	TMEM18, ACP1, FAM150B, SH3YL1, SNTG2, LOC339822	rs2867125-C	0.83	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	622826	622827	rs2867125	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	2p25.3	TMEM18, ACP1, FAM150B, SH3YL1, SNTG2, LOC339822	rs2867125-C	0.83	2E-30		0.051	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	622826	622827	rs2867125	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	2p25.3	TMEM18	rs2867125-C	0.83	6E-49		0.086	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	622826	622827	rs2867125	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p25.3	TMEM18, ACP1, FAM150B, SH3YL1, SNTG2, LOC339822	rs2867125-C	0.83	1E-72				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	622826	622827	rs2867125	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p25.3	TMEM18	rs2867125-C	0.83	3E-49		0.31	[0.25-0.37] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
589	chr2	623975	623976	rs6728726	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	2p25.3	NR	rs6728726-?	NR	2E-12		11.527	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
589	chr2	623975	623976	rs6728726	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2p25.3	FAM150B, TMEM18	rs6728726-T		6E-13		0.967	[NR]	Affymetrix [up to 79000000] (imputed)	N
589	chr2	624033	624034	rs6711012	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs6711012-?	NR	2E-12		0.06796184	[0.049-0.087] unit increase	Illumina [32062178] (imputed)	N
589	chr2	624033	624034	rs6711012	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p25.3	TMEM18	rs6711012-C	0.82	6E-35	(Overweight)	1.11	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
589	chr2	624033	624034	rs6711012	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p25.3	TMEM18	rs6711012-C	0.82	3E-40	(Obesity class I)	1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
589	chr2	624204	624205	rs6731872	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs6731872-T	0.17093	3E-6	(males)	0.01931	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
589	chr2	624204	624205	rs6731872	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs6731872-T	0.17093	8E-6	(females)	0.01817	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
589	chr2	624204	624205	rs6731872	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs6731872-T	0.17093	8E-33	(females)	0.05065	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
589	chr2	624204	624205	rs6731872	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs6731872-T	0.17093	7E-28	(males)	0.03098	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
589	chr2	624204	624205	rs6731872	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p25.3	intergenic	rs6731872-T	0.17093	2E-43		0.04218	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
589	chr2	624204	624205	rs6731872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p25.3	NR	rs6731872-G	0.826	4E-31		0.0165136	[0.014-0.019] unit increase	NR [9732723] (imputed)	N
589	chr2	624204	624205	rs6731872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p25.3	NR	rs6731872-G	0.826	5E-21		0.03159767	[0.025-0.038] unit increase	NR [~ 10000000] (imputed)	N
589	chr2	624204	624205	rs6731872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p25.3	NR	rs6731872-G	0.832	2E-11		0.0195868	[0.014-0.025] unit increase	NR [9732723] (imputed)	N
589	chr2	624204	624205	rs6731872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p25.3	NR	rs6731872-G	0.826	4E-9		0.0102333	[0.0068-0.0136] unit increase	NR [~ 9732723] (imputed)	N
589	chr2	624209	624210	rs6711254	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p25.3		rs6711254-G	0.173	2E-22		0.015	[0.011-0.019] unit decrease	NR [NR] (imputed)	N
589	chr2	624209	624210	rs6711254	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p25.3	NR	rs6711254-A	0.832	1E-16		0.0161461	[0.012-0.02] unit decrease	NR [9732723] (imputed)	N
589	chr2	624677	624678	rs2903492	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs2903492-?	NR	3E-12		0.06703777	[0.048-0.086] unit increase	Illumina [32062178] (imputed)	N
589	chr2	624677	624678	rs2903492	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	2p25.3	TMEM18	rs2903492-A	0.83	6E-15		1.26	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
589	chr2	625056	625057	rs7576635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p25.3		rs7576635-T	0.904292	9E-21		0.0503323	[0.04-0.061] unit increase	Illumina [13479178] (imputed)	N
589	chr2	628503	628504	rs6744646	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs6744646-?	NR	1E-110				Affymetrix [~ 8270000] (imputed)	N
589	chr2	628503	628504	rs6744646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.3		rs6744646-?	NR	4E-111				NR [~ 8900000] (imputed)	N
589	chr2	628523	628524	rs6744653	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	2p25.3	TMEM18	rs6744653-A	0.174	6E-8		0.0277	[0.018-0.038] unit increase	NR [up to 9000000] (imputed)	N
589	chr2	629243	629244	rs12463617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p25.3		rs12463617-C	0.903084402	1E-9		0.101439215	[0.069-0.134] unit increase	Illumina [13134967] (imputed)	N
589	chr2	629243	629244	rs12463617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p25.3		rs12463617-C	NR	5E-10		0.0703	[0.048-0.092] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
589	chr2	629243	629244	rs12463617	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs12463617-?	NR	2E-8		0.04766757	[0.031-0.064] unit increase	Illumina [32062178] (imputed)	N
589	chr2	629243	629244	rs12463617	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	2p25.3	TMEM18	rs12463617-C	0.91	2E-12		0.0634	[0.046-0.081] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
589	chr2	629243	629244	rs12463617	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	2p25.3	TMEM18	rs12463617-A	0.15	3E-17		0.1	[0.076-0.124] unit decrease	Affymetrix, Illumina [557887] (imputed)	N
589	chr2	629243	629244	rs12463617	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	2p25.3	TMEM18	rs12463617-C	0.85	2E-13		1.42	[1.29-1.56]	Affymetrix [~ 2000000] (imputed)	N
589	chr2	629509	629510	rs6743060	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p25.3	NA	rs6743060-A	0.8423	2E-32		0.0266	[0.022-0.031] unit increase	NR [~ 27400000] (imputed)	N
589	chr2	629600	629601	rs6748821	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	2p25.3	TMEM18	rs6748821-G	0.798391	8E-21		1.32	[1.24-1.39]	Illumina [41266535] (imputed)	N
589	chr2	629830	629831	rs6752706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p25.3		rs6752706-?	NR	2E-13				NR [~ 8900000] (imputed)	N
589	chr2	629830	629831	rs6752706	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2p25.3	TMEM18	rs6752706-C	0.82	4E-18		0.004	[0.0032-0.0048] unit decrease	Affymetrix [15275733] (imputed)	N
589	chr2	629880	629881	rs12995480	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2p25.3	TMEM18	rs12995480-T	0.17	1E-10		0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
589	chr2	630069	630070	rs66906321	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	2p25.3	TMEM18	rs66906321-C	0.813524	1E-34		1.25	[1.21-1.29]	Illumina [~ 41266535] (imputed)	N
589	chr2	630069	630070	rs66906321	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p25.3	TMEM18	rs66906321-T	0.178119	5E-10		0.015077	[0.01-0.02] unit decrease	NR [13737936] (imputed)	N
589	chr2	630074	630075	rs73139123	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body mass index	19,900 British ancestry individuals from 6863 families.	NA	2p25.3	intergenic	rs73139123-T	0.183	1E-9		0.08785722	[0.059-0.116] kg/m2 increase	Illumina [24111857] (imputed)	N
589	chr2	630322	630323	rs6725549	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p25.3	NR	rs6725549-A	0.8423	8E-32		0.0263	[0.022-0.031] unit increase	NR [~ 27400000] (imputed)	N
589	chr2	630322	630323	rs6725549	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p25.3	NR	rs6725549-A	0.828391384341878	1E-74		0.06562978	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	630568	630569	rs6735049	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	TMEM18	rs6735049-T	0.1705	3E-14		0.0668	[0.05-0.084] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	631068	631069	rs5017302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p25.3		rs5017302-?	NR	5E-38				NR [~ 8900000] (imputed)	N
589	chr2	631095	631096	rs5017301	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2p25.3	NR	rs5017301-G	0.0941	6E-10		0.0959	[0.066-0.126] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
589	chr2	631098	631099	rs5017300	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2p25.3		rs5017300-G	0.903864898	3E-13		1.1077554	[1.07764172-1.138710501]	Illumina [8919992] (imputed)	N
589	chr2	631182	631183	rs7579427	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2p25.3	NR	rs7579427-A	NR	4E-18	(EA)	0.2194	[0.17-0.27] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
589	chr2	631605	631606	rs10865548	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p25.3	TMEM18	rs10865548-G	0.8276	2E-16		0.016	[0.012-0.02] unit increase	Affymetrix [~ 7740000] (imputed)	N
589	chr2	631758	631759	rs10865549	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	2p25.3	TMEM18	rs10865549-A		3E-19		0.0111	[0.0087-0.0135] unit increase	Illumina [at least 200000]	N
589	chr2	632027	632028	rs11127485	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs11127485-?	NR	7E-12		0.0663188	[0.047-0.085] unit increase	Illumina [32062178] (imputed)	N
589	chr2	632027	632028	rs11127485	20421936	Scherag A	2010-04-22	PLoS Genet	Two new Loci for body-weight regulation identified in a joint analysis of genome-wide association studies for early-onset extreme obesity in French and german study groups.	Obesity (early onset extreme)	1,138 European ancestry cases, 1,120 European ancestry normal or lean controls	1,181 European ancestry cases, 1,960 European ancestry normal or lean controls, 981 European ancestry cases  and 1,430 European ancestry controls from 715 families	2p25.3	TMEM18	rs11127485-T	NR	2E-7		1.23	[1.08-1.41]	Affymetrix, Illumina [1596878] (imputed)	N
589	chr2	632347	632348	rs13021737	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs13021737-?	NR	7E-12		0.0662355	[0.047-0.085] unit increase	Illumina [32062178] (imputed)	N
589	chr2	632347	632348	rs13021737	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p25.3	NA	rs13021737-A	0.1567	3E-161		0.0578	[0.054-0.062] unit decrease	NR [~ 27400000] (imputed)	N
589	chr2	632347	632348	rs13021737	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p25.3	NR	rs13021737-A	NR	4E-69		0.058	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
589	chr2	632347	632348	rs13021737	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p25.3	FAM150B, TMEM18	rs13021737-G	0.82	4E-65		0.057	[0.051-0.063] unit increase	Illumina [6108953] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	8E-40				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	3E-28	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	1E-15	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	2E-6	(men)	0.0661	[0.039-0.093] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	2E-12		0.0671	[0.048-0.086] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	1E-7	(women)	0.0689	[0.043-0.094] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	8E-12	(men)	0.0524	[0.037-0.067] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	3E-30		0.0582	[0.048-0.068] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	2E-23	(women)	0.0636	[0.051-0.076] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	9E-41		0.0594	[0.051-0.068] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	3E-28	(women)	0.0631	[0.052-0.074] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.3	TMEM18	rs13021737-A	0.1701	3E-17	(men)	0.0564	[0.043-0.07] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	632347	632348	rs13021737	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	2p25.3	TMEM18	rs13021737-G	NR	2E-26	(additive model)	0.058	[0.048-0.068] unit increase	NR [9288881] (imputed)	N
589	chr2	632347	632348	rs13021737	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	2p25.3	NR	rs13021737-G	NR	5E-18				Affymetrix, Illumina [2499691] (imputed)	N
589	chr2	632347	632348	rs13021737	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.3	TMEM18	rs13021737-G	0.83	5E-54		0.06	[0.053-0.068] kg/m2 increase	Affymetrix, Illumina [2550021]	N
589	chr2	632347	632348	rs13021737	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.3	TMEM18	rs13021737-G	0.828	7E-40	(EA, women)	0.069	[0.058-0.079] kg/m2 increase	Affymetrix, Illumina [2550021]	N
589	chr2	632347	632348	rs13021737	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.3	TMEM18	rs13021737-G	0.828	4E-22	(EA, men)	0.052	[0.041-0.063] kg/m2 increase	Affymetrix, Illumina [2550021]	N
589	chr2	632347	632348	rs13021737	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.3	TMEM18	rs13021737-G	0.828	1E-50	(EA)	0.06	[0.052-0.068] kg/m2 increase	Affymetrix, Illumina [2550021]	N
589	chr2	632535	632536	rs13022164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p25.3		rs13022164-G	NR	2E-87		0.0466	[0.042-0.051] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
589	chr2	632535	632536	rs13022164	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	2p25.3	intergenic	rs13022164-?	NR	4E-10		0.020283	[0.014-0.027] unit decrease	Affymetrix [25921788] (imputed)	N
589	chr2	632535	632536	rs13022164	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p25.3	intergenic	rs13022164-?	NR	2E-8		0.0181249	[0.012-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
589	chr2	632591	632592	rs12992672	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p25.3	TMEM18	rs12992672-G	0.171864	4E-121		0.0433484	[0.04-0.047] unit decrease	Affymetrix [12370749]	N
589	chr2	632789	632789	rs10634531	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2p25.3	TMEM18	rs10634531-CTTG	0.906	2E-17		1.1	[1.08-1.13]	Affymetrix, Illumina [11800000] (imputed)	N
589	chr2	632921	632922	rs62105303	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	2p25.3	FAM150B, TMEM18	rs62105303-?	NR	3E-8		0.086	[0.117-0.056] unit decrease	Illumina [12039487] (imputed)	N
589	chr2	633053	633053	rs143684747	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	2p25.3		rs143684747-AC	0.83	2E-7		0.013	nmol/L decrease	NR [NR] (imputed)	N
589	chr2	633053	633053	rs143684747	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p25.3		rs143684747-AC	0.83	4E-24				NR [NR] (imputed)	N
589	chr2	633053	633053	rs143684747	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p25.3		rs143684747-AC	0.83	3E-49		0.029	% increase	NR [NR] (imputed)	N
589	chr2	633054	633055	rs374892365	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p25.3	TMEM18	rs374892365-A	0.171957	3E-89		0.0364526	[0.033-0.04] unit decrease	Affymetrix [12370749]	N
589	chr2	633062	633063	rs74676797	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	2p25.3		rs74676797-A	0.8184	6E-10		1.0510609	[1.034506283-1.067880356]	Affymetrix, Illumina [NR] (imputed)	N
589	chr2	633659	633660	rs62105306	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	2p25.3	TMEM18	rs62105306-T	0.754	4E-7	(AA,Women)	0.055	[0.033-0.077] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
589	chr2	633659	633660	rs62105306	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	2p25.3	TMEM18	rs62105306-T	0.752	3E-28		0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
589	chr2	633659	633660	rs62105306	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	2p25.3	TMEM18	rs62105306-T	0.752	2E-9	(AA)	0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
589	chr2	634904	634905	rs6548238	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs6548238-?	NR	8E-12		0.06618882	[0.047-0.085] unit increase	Illumina [32062178] (imputed)	N
589	chr2	634904	634905	rs6548238	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	2p25.3	TMEM18	rs6548238-C	0.84	1E-18		0.26	[0.19-0.34] kg/m2 increase	Affymetrix, Illumina [2399588] (imputed)	N
589	chr2	635720	635721	rs6755502	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2p25.3	TMEM18	rs6755502-C	0.83	6E-8	(European)	0.035	[0.023-0.047] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
589	chr2	635720	635721	rs6755502	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2p25.3	TMEM18	rs6755502-C	0.83	3E-9	(women)	0.052	[0.035-0.069] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
589	chr2	635720	635721	rs6755502	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2p25.3	TMEM18	rs6755502-C	0.83	3E-8	(European women)	0.049	[0.031-0.067] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
589	chr2	635720	635721	rs6755502	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2p25.3	TMEM18	rs6755502-C	0.83	1E-10		0.039	[0.027-0.051] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1723	8E-20	(EA, women)	0.0533	[0.042-0.065] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1723	2E-30	(EA)	0.0512	[0.042-0.06] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1723	2E-15	(EA, men)	0.0492	[0.037-0.061] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1722	3E-21	(EA,women)	0.0575	[0.046-0.069] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1722	2E-30	(EA)	0.0539	[0.045-0.063] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635720	635721	rs6755502	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.3	TMEM18	rs6755502-T	0.1722	2E-14	(EA, men)	0.0498	[0.037-0.063] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
589	chr2	635856	635857	rs6746275	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p25.3	TMEM18	rs6746275-A	0.8474	6E-16		0.0349	[0.026-0.043] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
589	chr2	635856	635857	rs6746275	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p25.3	NR	rs6746275-A	0.8471	2E-12	(women)	0.0443	[0.032-0.057] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
589	chr2	635863	635864	rs6751993	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	2p25.3	TMEM18	rs6751993-?	NR	4E-12				NR [5554549] (imputed)	N
589	chr2	635863	635864	rs6751993	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	2p25.3	TMEM18	rs6751993-?	NR	1E-58				NR [5554549] (imputed)	N
589	chr2	635863	635864	rs6751993	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	2p25.3	TMEM18	rs6751993-?	NR	4E-18				NR [5554549] (imputed)	N
589	chr2	635863	635864	rs6751993	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	2p25.3	TMEM18	rs6751993-?	NR	3E-65				NR [5554549] (imputed)	N
589	chr2	636789	636790	rs35142762	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p25.3	TMEM18	rs35142762-T	0.8282	5E-22		0.004	[0.0032-0.0048] unit decrease	Affymetrix [15275733] (imputed)	N
589	chr2	637829	637830	rs13393304	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p25.3	NR	rs13393304-A	0.1712	6E-42		0.04447051	[0.038-0.051] unit decrease	Affymetrix [10549349] (imputed)	N
589	chr2	638106	638107	rs4854343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p25.3		rs4854343-A	NR	5E-14		0.0688	[0.051-0.087] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
589	chr2	638143	638144	rs4854344	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs4854344-T	0.8323	2E-11	(men)	0.0949	[0.067-0.123] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	638143	638144	rs4854344	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p25.3	TMEM18	rs4854344-T	0.8266	2E-19		0.088	[0.069-0.107] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	638143	638144	rs4854344	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs4854344-?	NR	9E-23	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	638143	638144	rs4854344	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p25.3	TMEM18	rs4854344-T	0.8228	2E-22	(men)	0.0678	[0.054-0.082] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
589	chr2	639054	639055	rs7564708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p25.3		rs7564708-C	0.897592414	3E-12		0.106639184	[0.077-0.137] unit increase	Illumina [13429769] (imputed)	N
589	chr2	639054	639055	rs7564708	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p25.3	NR	rs7564708-C	0.829075	2E-10		0.082886	[0.057-0.108] unit increase	Affymetrix [21375087] (imputed)	N
589	chr2	640986	640990	rs72156956	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2p25.3	TMEM18	rs72156956-C	0.9	3E-10		1.1	1.07-1.13	Illumina [12557761] (imputed)	N
589	chr2	642498	642499	rs7601028	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2p25.3	LOC105373352, TMEM18	rs7601028-C	0.103	7E-6	(EA)	0.025714286	[0.015-0.037] unit decrease	Illumina [1986983] (imputed)	N
589	chr2	642498	642499	rs7601028	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2p25.3	LOC105373352, TMEM18	rs7601028-C	0.0989	2E-7	(Japanese)	0.0343	[0.021-0.047] unit decrease	Illumina [1986983] (imputed)	N
589	chr2	644952	644953	rs7561317	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs7561317-?	NR	1E-8		0.0477619	[0.031-0.064] unit increase	Illumina [32062178] (imputed)	N
589	chr2	644952	644953	rs7561317	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	2p25.3	TMEM18	rs7561317-G	0.84	2E-18		6.47	[5.02-7.92] percentage SD increase	Illumina [305846]	N
589	chr2	644952	644953	rs7561317	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	2p25.3	TMEM18	rs7561317-G	0.84	4E-17		6.12	[4.69-7.55] % SD increase	Illumina [305846]	N
589	chr2	646363	646364	rs10189761	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs10189761-?	NR	2E-9		0.05123159	[0.035-0.068] unit increase	Illumina [32062178] (imputed)	N
589	chr2	646363	646364	rs10189761	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p25.3	TMEM18	rs10189761-A	0.82	6E-24	(Obesity class II)	1.24	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
589	chr2	646673	646674	rs10190052	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	2p25.3	TMEM18	rs10190052-C		2E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [2500000] (imputed)	N
589	chr2	646848	646849	rs7571970	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	2p25.3	TMEM18	rs7571970-T	0.172823	9E-12		0.02076	[0.015-0.027] unit decrease	Affymetrix [19400838] (imputed)	N
589	chr2	647860	647861	rs4854349	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p25.3	NR	rs4854349-?	NR	1E-8		0.04396674	[0.029-0.059] unit increase	Illumina [32062178] (imputed)	N
589	chr2	647860	647861	rs4854349	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	2p25.3	TMEM18	rs4854349-C	0.83	5E-22		0.09	[0.072-0.108] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
589	chr2	649346	649347	rs1320338	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x age interaction	up to 112,279 European ancestry individuals aged <50, up to 197,610 European ancestry individuals aged >50	NA	2p25.3	NR	rs1320338-T	0.82	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
589	chr2	651348	651349	rs2867112	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p25.3		rs2867112-T	0.835	5E-15		0.021	[0.015-0.027] unit increase	Affymetrix [up to 90000000] (imputed)	N
589	chr2	651348	651349	rs2867112	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p25.3	TMEM18	rs2867112-T	0.8301	1E-11		0.035023	[0.025-0.045] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
589	chr2	651406	651407	rs12714414	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p25.3		rs12714414-C	NR	3E-11		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
589	chr2	651406	651407	rs12714414	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p25.3	NR	rs12714414-T	0.85	5E-11		0.017	[0.012-0.022] unit increase	NR [NR]	N
589	chr2	651429	651430	rs12714415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p25.3		rs12714415-C	NR	2E-81		0.0525	[0.047-0.058] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
589	chr2	651429	651430	rs12714415	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p25.3	NR	rs12714415-T	0.8377	8E-19		0.0241128	[0.019-0.029] unit increase	NR [NR]	N
589	chr2	651429	651430	rs12714415	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2p25.3	NR	rs12714415-T	0.8466	1E-30		0.0264	[0.022-0.031] unit increase	NR [~ 27400000] (imputed)	N
589	chr2	651429	651430	rs12714415	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p25.3	NA	rs12714415-T	0.8476	1E-157		0.0584	[0.054-0.063] unit increase	NR [~ 27400000] (imputed)	N
589	chr2	651429	651430	rs12714415	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p25.3		rs12714415-?	NR	6E-6		0.0120499	[0.0065-0.0176] unit increase	Affymetrix [20259828] (imputed)	N
589	chr2	651429	651430	rs12714415	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p25.3	TMEM18	rs12714415-T	0.849647	4E-9		0.0294688	[0.02-0.039] unit increase	NR [17166351] (imputed)	N
589	chr2	651429	651430	rs12714415	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p25.3	TMEM18	rs12714415-T	0.849163	4E-7	(men)	0.0392093	[0.025-0.054] unit increase	NR [17166351] (imputed)	N
589	chr2	652216	652217	rs115256206	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	TMEM18	rs115256206-A	0.0296	5E-6		0.1006	[0.057-0.144] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	652216	652217	rs115256206	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	TMEM18	rs115256206-A	0.0296	5E-6		0.1006	[0.057-0.144] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	653194	653195	rs13396935	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	2p25.3		rs13396935-?	NR	2E-11		0.0425	[0.018-0.067] unit increase	NR [NR] (imputed)	N
589	chr2	653194	653195	rs13396935	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p25.3	TMEM18	rs13396935-A	0.1773	4E-13		0.019117456	[0.014-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
589	chr2	653244	653245	rs13412194	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	2p25.3	TMEM18	rs13412194-?	NR	1E-14				NR [5554549] (imputed)	N
589	chr2	653244	653245	rs13412194	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	2p25.3	TMEM18	rs13412194-?	NR	1E-55				NR [5554549] (imputed)	N
589	chr2	653574	653575	rs35913461	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p25.3	TMEM18	rs35913461-C	0.8291	2E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
589	chr2	653622	653623	rs10188118	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	2p25.3	LOC105373352, TMEM18	rs10188118-C	0.864	9E-9	(Japanese)	0.035	[0.023-0.047] unit increase	Illumina [5864938] (imputed)	N
589	chr2	653873	653874	rs10188334	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p25.3	NR	rs10188334-C	0.8277	8E-16		0.0503	[0.038-0.062] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
589	chr2	653873	653874	rs10188334	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p25.3	NR	rs10188334-C	0.8409	2E-24		0.0544	[0.044-0.065] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
589	chr2	653873	653874	rs10188334	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	2p25.3		rs10188334-T	NR	8E-6		0.00467565	[0.0026-0.0067] years increase	NR [7400000] (imputed)	N
589	chr2	653873	653874	rs10188334	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2p25.3		rs10188334-T	NR	1E-9		0.0254159	[0.017-0.034] years increase	NR [7400000] (imputed)	N
589	chr2	655221	655222	rs13029479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.3	TMEM18	rs13029479-A	0.1173	2E-7		0.0569	[0.036-0.078] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	655221	655222	rs13029479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	TMEM18	rs13029479-A	0.1176	4E-6		0.053	[0.03-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
589	chr2	655221	655222	rs13029479	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p25.3	TMEM18	rs13029479-A	0.1176	4E-6		0.053	[0.03-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr2	656730	656731	rs189973909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs189973909-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
590	chr2	658549	658550	rs2867121	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p25.3	TMEM18	rs2867121-A	0.9156	8E-7		0.0633	[0.038-0.088] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
590	chr2	658594	658595	rs7596758	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	2p25.3	TMEM18	rs7596758-G	0.32	5E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
590	chr2	663482	663483	rs12999373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs12999373-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
590	chr2	663482	663483	rs12999373	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	2p25.3	TMEM18	rs12999373-?	NR	3E-6	(Baseline)	0.14	[0.081-0.199] ng/dL decrease	Affymetrix [2543887] (imputed)	N
590	chr2	663482	663483	rs12999373	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	2p25.3	TMEM18	rs12999373-A	0.27	2E-6		17.65	[NR] umol/L decrease	Affymetrix [2241249] (imputed)	N
590	chr2	674962	674963	rs12990777	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs12990777-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
590	chr2	677590	677591	rs11893030	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs11893030-?	NR	7E-31				Affymetrix [~ 8270000] (imputed)	N
590	chr2	678385	678386	rs11127493	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs11127493-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
590	chr2	679178	679179	rs1320333	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.3	TMEM18	rs1320333-A	0.057	8E-6	(Urinary creatinine )	0.03	[NR] mmol/d increase	Illumina [899892]	N
590	chr2	710283	710284	rs72760962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs72760962-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
590	chr2	773277	773278	rs4380275	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (doxorubicin)	83 Japanese ancestry cases, 66 Japanese ancestry controls	NA	2p25.3	LOC339822	rs4380275-G	0.152	5E-6	(Recessive model)	3.604	[2.041-6.365]	Illumina [733202]	N
591	chr2	793466	793467	rs79200132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs79200132-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
591	chr2	829730	829731	rs35151412	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p25.3	SNTG2	rs35151412-T	0.135381055242003	3E-7	(F_Rhodospirillaceae_HB)	0.433335	[0.27-0.6] unit decrease	Illumina [7711310] (imputed)	N
591	chr2	835794	835795	rs149674979	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2p25.3	NR	rs149674979-?	NR	5E-6		9.6463	[2.83-16.46] unit increase	Illumina [at least 560000] (imputed)	N
592	chr2	950290	950291	rs6759670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.3		rs6759670-?	NR	1E-11				NR [~ 8900000] (imputed)	N
592	chr2	955088	955089	rs147081078	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2p25.3	SNTG2	rs147081078-A	0.016	6E-6		3.51	[2.04-6.04]	Illumina [7959153] (imputed)	N
592	chr2	965578	965579	rs13382275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p25.3	SNTG2	rs13382275-G	0.95	4E-6	(AA)	0.069	NR unit increase	Illumina [NR] (imputed)	N
592	chr2	965578	965579	rs13382275	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p25.3	SNTG2	rs13382275-G	0.95	2E-7	(AA)	0.321	NR unit increase	Illumina [NR] (imputed)	N
592	chr2	974719	974720	rs4524155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.3	NR	rs4524155-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
592	chr2	1047075	1047076	rs77557904	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	2p25.3		rs77557904-G	0.06	2E-6		3.82	[2.19-6.68]	Illumina [7989272] (imputed)	N
593	chr2	1070781	1070782	rs13020106	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	2p25.3	NR	rs13020106-?		7E-6		2.57	[NR]	Illumina [NR] (imputed)	N
593	chr2	1095501	1095502	rs12477098	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	2p25.3	NR	rs12477098-T	0.527396834	7E-6		0.15764286	[0.089-0.226] unit increase	Affymetrix [536506]	N
593	chr2	1119720	1119720	rs61663449	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2p25.3		rs61663449-AT	0.39088	2E-6		0.033407	[0.02-0.047] unit decrease	Affymetrix [15580782] (imputed)	N
595	chr2	1326142	1326143	rs12465180	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	2p25.3	SNTG2	rs12465180-C	0.121	9E-6		1.19	[1.12-1.26]	Affymetrix, Illumina [8000000] (imputed)	N
595	chr2	1351889	1351890	rs570398477	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor levels	3,116 European ancestry individuals	NA	2p25.3	SNTG2, TPO	rs570398477-C	0.011	5E-7		0.18	[0.11-0.25] unit decrease	Illumina [10000000] (imputed)	N
595	chr2	1407627	1407628	rs11675342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2p25.3		rs11675342-T	NR	1E-26		0.0938	[0.077-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
595	chr2	1407627	1407628	rs11675342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2p25.3		rs11675342-T	NR	1E-19		0.0906	[0.071-0.11] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
595	chr2	1407627	1407628	rs11675342	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2p25.3	TPO	rs11675342-T	0.424	1E-21		1.09	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
595	chr2	1407627	1407628	rs11675342	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2p25.3	TPO	rs11675342-T	0.423396	6E-25		0.09530659	[0.077-0.113] unit increase	Affymetrix [7288503] (imputed)	N
595	chr2	1407627	1407628	rs11675342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2p25.3		rs11675342-?	NR	1E-29				NR [~ 8900000] (imputed)	N
595	chr2	1407627	1407628	rs11675342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2p25.3		rs11675342-?	NR	3E-9				NR [~ 8900000] (imputed)	N
595	chr2	1407627	1407628	rs11675342	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Hypothyroidism	3,340 European ancestry cases, 49,983 European ancestry controls	NA	2p25.3	TPO	rs11675342-T	0.43	2E-10		0.16	[0.11-0.21] unit increase	Affymetrix, Illumina [5965951] (imputed)	N
595	chr2	1407627	1407628	rs11675342	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	2p25.3	TPO, SNTG2	rs11675342-?	NR	6E-14		1.099	[1.08-1.12]	Illumina [13676411] (imputed)	N
595	chr2	1407814	1407815	rs11675434	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	2p25.3	TPO	rs11675434-T	0.39	2E-16		1.21	[1.15-1.28]	Affymetrix, Illumina [up to 3437411] (imputed)	N
595	chr2	1407814	1407815	rs11675434	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	2p25.3	TPO	rs11675434-T	0.39	7E-13		0.0202	[0.011-0.029] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
595	chr2	1417243	1417244	rs2071403	24722205	Kwak SH	2014-04-17	Hum Mol Genet	A genome-wide association study on thyroid function and anti-thyroid peroxidase antibodies in Koreans.	Thyroid peroxidase antibody positivity	377 Korean ancestry cases, 3,019 Korean ancestry anti-TPO controls	108 Korean ancestry cases, 734 Korean ancestry controls	2p25.3	TPO	rs2071403-?	0.62	1E-10		1.65	[1.50-1.80]	Affymetrix [1418709] (imputed)	N
595	chr2	1418191	1418192	rs9678281	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2p25.3	TPO	rs9678281-G	0.382679905983378	1E-13		0.0382	[0.028-0.048] SD increase	Illumina [22400000] (imputed)	N
595	chr2	1437987	1437988	rs1514687	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2p25.3	CHST9	rs1514687-?		2E-7	(AA)	16.8	[NR]	Illumina [936149]	N
596	chr2	1490180	1490181	rs1913584	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	2p25.3		rs1913584-G	NR	8E-6		2.6739	[1.53-3.82] unit decrease	Illumina [NR] (imputed)	N
596	chr2	1500595	1500596	rs13429459	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	2p25.3		rs13429459-C	0.831655	4E-6		0.00928708	[0.0025-0.0161] unit decrease	Illumina [7666802] (imputed)	N
596	chr2	1554189	1554190	rs78456975	28696415	Maciukiewicz M	2017-07-11	Pharmacogenomics J	Genome-wide association studies of placebo and duloxetine response in major depressive disorder.	Placebo response in major depressive disorder (% change in symptom score)	205 European ancestry individuals	NA	2p25.3	TPO	rs78456975-?		3E-6		0.59	[NR] unit increase	Illumina [1924595] (imputed)	N
596	chr2	1557926	1557927	rs10206020	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p25.3	NR	rs10206020-C	0.188382478860703	3E-6	(IGP43)	0.1805	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
596	chr2	1557926	1557927	rs10206020	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p25.3	NR	rs10206020-C	0.188020994657168	4E-6	(IGP3)	0.1798	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
597	chr2	1609657	1609658	rs73168450	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	2p25.3	PXDN	rs73168450-G	NR	4E-8		0.431	[0.28-0.58] unit increase	NR [11024754] (imputed)	N
597	chr2	1626391	1626392	rs9752743	33941792	Yoshimura K	2021-05-03	Sci Rep	A web-based survey on various symptoms of computer vision syndrome and the genetic understanding based on a multi-trait genome-wide association study.	Computer vision syndrome	1,966 Japanese ancestry individuals	NA	2p25.3	AC144450.1	rs9752743-?	NR	6E-6				Illumina [540916] (imputed)	N
597	chr2	1642069	1642070	rs12714332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p25.3		rs12714332-?	NR	4E-10				NR [~ 8900000] (imputed)	N
597	chr2	1645635	1645636	rs73178769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.3		rs73178769-?	NR	4E-17				NR [~ 8900000] (imputed)	N
597	chr2	1652376	1652377	rs186563338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p25.3		rs186563338-T	NR	3E-15		0.0674	[0.051-0.084] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
597	chr2	1652376	1652377	rs186563338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p25.3		rs186563338-T	0.013831	3E-15		0.0674332	[0.051-0.084] unit decrease	Illumina [13479295] (imputed)	N
598	chr2	1708501	1708502	rs7588729	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PXDN	5,363 Icelandic ancestry individuals	NA	2p25.3		rs7588729-A	0.4996	5E-17		0.151242	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
598	chr2	1709778	1709779	rs34008669	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p25.3	PXDN	rs34008669-G	0.5021875	2E-11	(PXDN, 13463_1_3)	0.15827815	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
598	chr2	1763508	1763509	rs2382562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.3		rs2382562-?	NR	2E-14				NR [~ 8900000] (imputed)	N
598	chr2	1777149	1777150	rs6735179	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p25.3	intergenic	rs6735179-?	0.346	1E-7	(perphenazine-triglycerides)			Affymetrix [492900]	N
598	chr2	1782136	1782137	rs6711954	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2p25.3	NR	rs6711954-?	NR	5E-6				Illumina [NR] (imputed)	N
598	chr2	1782580	1782581	rs11681214	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	2p25.3	PXDN, MYT1L	rs11681214-?	NR	5E-6				Illumina [NR] (imputed)	N
598	chr2	1782580	1782581	rs11681214	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2p25.3	PXDN, MYT1L	rs11681214-?	NR	4E-8		3.5	[2.10-5.83]	Illumina [NR] (imputed)	N
598	chr2	1784430	1784431	rs189422469	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2p25.3	NR	rs189422469-?	NR	9E-6				Illumina [NR] (imputed)	N
598	chr2	1785658	1785659	rs2059413	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	2p25.3	PXDN, MYT1L	rs2059413-?	NR	6E-6		1.4084507	[1.22-1.64]	Illumina [5698748] (imputed)	N
598	chr2	1806777	1806778	rs11893101	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	2p25.3	MYT1L	rs11893101-A	NR	3E-6		0.227	[0.13-0.32] unit decrease	Illumina [NR] (imputed)	N
598	chr2	1823227	1823228	rs72765564	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p25.3	MYT1L	rs72765564-T	0.0408682270580595	4E-8	(G_Lactococcus_HB)	0.862714	[0.55-1.17] unit increase	Illumina [7711310] (imputed)	N
599	chr2	1855117	1855118	rs116726256	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-8 levels	3,526 Finnish ancestry individuals	NA	2p25.3	NR	rs116726256-C		6E-6		0.2184	[0.12-0.31] SD units increase	NR [10700000] (imputed)	N
599	chr2	1855566	1855567	rs4553849	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	2p25.3	MYT1L	rs4553849-A	NR	3E-8	(PWY-4722_creatinine_degradation_II)	5.51509	NR Z-score increase	Illumina [8100000] (imputed)	N
599	chr2	1862137	1862137	rs146196645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p25.3		rs146196645-ATCCGACTGC	NR	2E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
599	chr2	1874423	1874424	rs79645452	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	2p25.3		rs79645452-?	NR	4E-6		0.4	[0.23-0.57] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
599	chr2	1877217	1877218	rs4519558	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p25.3	MYT1L	rs4519558-?		5E-6				Illumina [4322238] (imputed)	N
599	chr2	1893132	1893133	rs75247762	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p25.3	PXDN, MYT1L	rs75247762-?		1E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
599	chr2	1903986	1903987	rs6737433	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p25.3	NR	rs6737433-G	0.228	2E-9		0.00771018	[0.0052-0.0102] unit increase	NR [9732723] (imputed)	N
599	chr2	1915511	1915512	rs7584755	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.3	MYT1L	rs7584755-C	0.03	3E-7		0.4674	[0.29-0.64] unit decrease	Illumina [~ 9000000] (imputed)	N
599	chr2	1925992	1925993	rs2241685	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2p25.3	MYT1L	rs2241685-?	NR	8E-6				Affymetrix [504219]	N
599	chr2	1943616	1943617	rs12714314	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	2p25.3	MYT1L, PXDN, MYT1L-AS1	rs12714314-?	NR	3E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
600	chr2	1969703	1969704	rs11687359	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	1,333 males	NA	2p25.3	MYT1L	rs11687359-A	NR	3E-7		0.401	[0.25-0.55] unit increase	Illumina [7369986] (imputed)	N
600	chr2	1994508	1994509	rs60771529	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	2p25.3	NR	rs60771529-?	NR	5E-6		0.055638	[0.032-0.08] unit increase	Affymetrix [9658292] (imputed)	N
600	chr2	2009414	2009415	rs115056666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p25.3	NR	rs115056666-T	0.0665	8E-9		0.0153424	[0.01-0.021] unit increase	NR [~ 9732723] (imputed)	N
600	chr2	2047396	2047397	rs6759709	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2p25.3	NR	rs6759709-G	0.2572	3E-7		0.1671	[0.1-0.23] unit increase	Illumina [7305641] (imputed)	N
601	chr2	2108826	2108827	rs72767375	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2p25.3	MYT1L	rs72767375-?	NR	2E-6		4.24		Illumina [6778521] (imputed)	N
601	chr2	2213508	2213509	rs61595816	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2p25.3	MYT1L	rs61595816-A	0.8489	3E-8		0.015017646	[0.0097-0.0203] unit decrease	Illumina [9339358] (imputed)	N
601	chr2	2225400	2225401	rs6548123	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	2p25.3	MYT1L	rs6548123-?	NR	6E-8	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
602	chr2	2254367	2254368	rs1895136	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	2p25.3	NR	rs1895136-?	NR	2E-6		0.86301345	[0.81-0.92]	Affymetrix, Illumina [~ 10400000] (imputed)	N
602	chr2	2303898	2303899	rs115357073	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Coprobacillus cateniformis abundance in stool	5,959 Finnish ancestry individuals	NA	2p25.3		rs115357073-A	0.0187817	4E-8		0.219351	[0.14-0.3] unit increase	Illumina [7980478] (imputed)	N
602	chr2	2303898	2303899	rs115357073	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Coprobacillus abundance in stool	5,959 Finnish ancestry individuals	NA	2p25.3		rs115357073-A	0.0187817	3E-8		0.246673	[0.16-0.33] unit increase	Illumina [7980478] (imputed)	N
603	chr2	2406487	2406488	rs11679592	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	2p25.3	MYTL	rs11679592-C	0.48	9E-6	(Southern European)	1.16	[1.03-1.31]	Illumina [546271]	N
603	chr2	2408073	2408074	rs74442120	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	2p25.3	NR	rs74442120-?	NR	2E-6		3.9588277	NR	Affymetrix, Illumina [7062950] (imputed)	N
603	chr2	2483625	2483626	rs12611820	25147783	Keene KL	2014-08-06	Front Public Health	Genetic Associations with Plasma B12, B6, and Folate Levels in an Ischemic Stroke Population from the Vitamin Intervention for Stroke Prevention (VISP) Trial.	Vitamin B levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	2p25.3	MYT1L	rs12611820-C	0.245	1E-6	(Vitamin B9 - Folate)	0.169	[NR] unit decrease	Illumina [737081]	N
604	chr2	2519512	2519513	rs10199521	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	2p25.3	MYT1L, LOC7029897	rs10199521-T	0.22	3E-6		1.46	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
604	chr2	2521247	2521248	rs1706867	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	2p25.3	NR	rs1706867-G	0.4629	4E-6		0.138	[0.079-0.197] unit increase	Illumina [10677593] (imputed)	N
604	chr2	2545733	2545734	rs181867028	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p25.3	NR	rs181867028-T	0.004	8E-6		0.911	[0.51-1.31] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
604	chr2	2548294	2548295	rs112624028	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p25.3	NR	rs112624028-?	NR	2E-6		0.0419	[0.025-0.059] unit increase	Illumina [at least 560000] (imputed)	N
604	chr2	2590380	2590381	rs2598592	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	2p25.3	intergenic	rs2598592-?	0.39	7E-6				Illumina [565404]	N
604	chr2	2605392	2605393	rs73908993	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	2p25.3		rs73908993-C	0.92	5E-7		0.91	[0.56-1.26] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
605	chr2	2700390	2700391	rs61519662	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors and depression	6,348 European ancestry responder cases, 191,357 European ancestry healthy controls	NA	2p25.3	MYT1L, TSSC1	rs61519662-?		2E-6		1.1013216	[1.06-1.15]	Illumina [~ 12000000] (imputed)	N
605	chr2	2700417	2700418	rs59171290	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	2p25.3	NR	rs59171290-?	NR	9E-6		0.0896	[0.05-0.129] unit increase	Illumina [at least 560000] (imputed)	N
605	chr2	2732876	2732877	rs896232	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p25.3	MYT1L, TSSC1	rs896232-?		1E-6	(SI+M)	0.2	[0.082-0.318] unit decrease	Illumina [693128]	N
606	chr2	2769919	2769920	rs62105778	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2p25.3	LINC01250	rs62105778-?		3E-6				Illumina [2668805]	N
606	chr2	2775738	2775739	rs67723639	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p25.3		rs67723639-?	NR	4E-8				NR [NR]	N
606	chr2	2775738	2775739	rs67723639	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p25.3		rs67723639-?	NR	3E-8				NR [NR]	N
606	chr2	2775738	2775739	rs67723639	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p25.3		rs67723639-?	NR	3E-8				NR [NR]	N
606	chr2	2775738	2775739	rs67723639	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p25.3		rs67723639-?	NR	5E-8				NR [NR]	N
606	chr2	2775738	2775739	rs67723639	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2p25.3	NR	rs67723639-A	0.094	3E-6		0.027620312	[0.016-0.039] unit decrease	Affymetrix [up to 6544775] (imputed)	N
606	chr2	2792074	2792075	rs72776813	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris heterochromicity	377 East Asian ancestry individuals	NA	2p25.3	intergenic	rs72776813-A	0.210892	4E-7		0.481	[0.3-0.66] unit decrease	Illumina [at least 520076] (imputed)	N
606	chr2	2815610	2815611	rs4420730	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	2p25.3		rs4420730-T	NR	4E-6		1.71	[1.36-2.14]	Illumina [7591411] (imputed)	N
606	chr2	2819543	2819544	rs11127334	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2p25.3		rs11127334-?	NR	4E-6		0.5296516	[0.31-0.75] unit increase	Illumina [9842460] (imputed)	N
606	chr2	2843307	2843308	rs13403149	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	2p25.3	NR	rs13403149-?	NR	7E-6	(males)			Illumina [1211988] (imputed)	N
606	chr2	2850539	2850540	rs823247	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p25.3	NR	rs823247-C	0.521	5E-10		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
607	chr2	2919796	2919797	rs11675358	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p25.3	TSSC1	rs11675358-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
607	chr2	2926012	2926013	rs17491951	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	2p25.3	AK095310	rs17491951-?	0.38	7E-6				Illumina [565404]	N
607	chr2	2947911	2947912	rs114846446	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	2p25.3	TSSC1	rs114846446-A	0.01	2E-7				Illumina [7347414] (imputed)	N
607	chr2	2999461	2999462	rs78059378	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p25.3	LINC01250	rs78059378-A	0.0628	4E-6		0.0877	[0.051-0.125] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
608	chr2	3093951	3093952	rs62121100	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	2p25.3	LINC01250	rs62121100-G	0.16	8E-6		0.07	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
608	chr2	3137112	3137113	rs117037106	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (non-planning)	21,786 European ancestry individuals	NA	2p25.3	MYT1L, TSSC1	rs117037106-G	0.9979	4E-7		0.705	[0.978-0.433] unit decrease	Illumina [11434023] (imputed)	N
608	chr2	3137112	3137113	rs117037106	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (motor)	21,806 European ancestry individuals	NA	2p25.3	MYT1L, TSSC1	rs117037106-G	0.9979	9E-7		0.676	[0.946-0.407] unit decrease	Illumina [11434023] (imputed)	N
608	chr2	3137112	3137113	rs117037106	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity	21,495 European ancestry individuals	NA	2p25.3	MYT1L, TSSC1	rs117037106-G	0.9978	1E-7		7.153	[9.785-4.520] unit decrease	Illumina [11508759] (imputed)	N
609	chr2	3171951	3171952	rs12624302	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.3	MYT1L, TSSC1	rs12624302-T	0.04	7E-9		0.4923	[0.33-0.66] unit increase	Illumina [~ 9000000] (imputed)	N
609	chr2	3172849	3172850	rs10495514	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	2p25.3	NR	rs10495514-A	0.0137	8E-6		0.4996	[0.28-0.72] unit decrease	NR [NR] (imputed)	N
609	chr2	3174320	3174321	rs921665	26824906	Rankinen T	2016-01-29	PLoS One	No Evidence of a Common DNA Variant Profile Specific to World Class Endurance Athletes.	World class endurance athleticism	60 Japanese ancestry world-class cases, 116 Japanese ancestry controls	at least 140 Sub-Saharan African ancestry cases, at least 275 Sub-Saharan African ancestry controls, at least 606 European ancestry cases, at least 978 European ancestry controls,  at least 688 Japanese ancestry controls, 78 cases, 101 controls.	2p25.3	TSSC1	rs921665-?	0.43	2E-6	(Japanese)	3.13	[1.92-5.00]	Illumina [541179]	N
609	chr2	3176414	3176415	rs7581969	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.3	MYT1L, TSSC1	rs7581969-C	0.04	5E-10	(EA)	0.5508	[0.38-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
609	chr2	3176990	3176991	rs72763716	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	2p25.3	NR	rs72763716-A	0.984	4E-6		0.4956	[0.29-0.71] unit increase	NR [NR] (imputed)	N
609	chr2	3199616	3199617	rs75365287	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	2p25.3	EIPR1	rs75365287-T	0.0139	4E-6		0.5101	[0.29-0.73] unit decrease	NR [NR] (imputed)	N
609	chr2	3244908	3244909	rs540817016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p25.3		rs540817016-T	NR	1E-8		1.0788	[0.71-1.45] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
609	chr2	3266490	3266491	rs193222145	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p25.3	NR	rs193222145-?	NR	4E-6		7479.3843	NR unit decrease	Illumina [2379855]	N
610	chr2	3321788	3321789	rs34901404	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.3	NR	rs34901404-T	0.05749	1E-8	(GK2)	0.004508	NR unit increase	Illumina [1671387] (imputed)	N
610	chr2	3334990	3334991	rs116162171	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p25.3	TSSC1	rs116162171-T	0.9067	3E-6		0.0564	[0.033-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
610	chr2	3357992	3357993	rs11127417	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (response to exercise)	51,897 European ancestry individuals	NA	2p25.3	EIPR1	rs11127417-G	0.012	2E-8		0.161	[0.1-0.22] unit increase	Affymetrix [~ 9000000] (imputed)	N
610	chr2	3392074	3392075	rs10865541	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.3	TTC15/TRAPPC12	rs10865541-A	0.488	6E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
611	chr2	3425513	3425514	rs7558487	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p25.3		rs7558487-G	0.35	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
611	chr2	3464809	3464810	rs7585799	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	2p25.3	NR	rs7585799-?		7E-6	(EA)			Illumina [~ 5140000] (imputed)	N
611	chr2	3472137	3472138	rs9309711	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2p25.3	TTC15	rs9309711-C	0.7072	3E-6	(Ordinal I)	0.2055	[0.12-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr2	3474084	3474085	rs35067331	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	2p25.3	ADI1, TRAPPC12, TRAPPC12-AS1	rs35067331-T	NR	6E-7				NR [6500000] (imputed)	N
611	chr2	3476421	3476422	rs11675119	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2p25.3	TTC15	rs11675119-A	0.2699	2E-7	(Ordinal II)	0.2541	[0.16-0.35] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
611	chr2	3497660	3497661	rs9309718	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	2p25.3		rs9309718-A	NR	1E-6		0.01	[0.0061-0.0139] unit increase	NR [7831927]	N
611	chr2	3513610	3513611	rs371234090	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p25.3	ADI1	rs371234090-A	0.9971	3E-6		0.3774	[0.22-0.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
612	chr2	3600434	3600435	rs147831154	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL19	5,359 Icelandic ancestry individuals	NA	2p25.3		rs147831154-C	0.01326	5E-38		1.05554	[0.9-1.22] unit decrease	Illumina [7506463] (imputed)	N
612	chr2	3600434	3600435	rs147831154	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC11	5,358 Icelandic ancestry individuals	NA	2p25.3		rs147831154-C	0.01326	3E-100		1.67506	[1.52-1.83] unit decrease	Illumina [7506463] (imputed)	N
612	chr2	3634752	3634753	rs4850047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p25.3		rs4850047-C	NR	4E-10		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	7E-15		0.0272	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	2E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	1E-11		0.0238	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	6E-14		0.0274	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	1E-18		0.0309	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p25.3	NR	rs4850047-C	NR	9E-12		0.025	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3634752	3634753	rs4850047	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	2p25.3	RPS7	rs4850047-?	NR	1E-9				NR [1800000]	N
612	chr2	3634752	3634753	rs4850047	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p25.3	intergenic	rs4850047-T	0.1359	5E-10		0.0193	[0.013-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
612	chr2	3636477	3636478	rs56236159	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p25.3	COLEC11	rs56236159-T	0.868512	7E-9		0.01784	[0.012-0.024] unit decrease	Affymetrix [NR] (imputed)	N
612	chr2	3636477	3636478	rs56236159	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p25.3	COLEC11	rs56236159-T	0.1457	5E-9		0.1285	[0.086-0.171] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
612	chr2	3639908	3639909	rs13402475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p25.3		rs13402475-G	NR	2E-14		0.0229	[0.017-0.029] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
612	chr2	3639908	3639909	rs13402475	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p25.3	COLEC11	rs13402475-C	0.184854	1E-20		0.0239795	[0.019-0.029] unit increase	Affymetrix [NR] (imputed)	N
612	chr2	3639908	3639909	rs13402475	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p25.3	GAPDHP48	rs13402475-?	NR	1E-9		0.0207	[0.015-0.027] unit decrease	Affymetrix [5701386] (imputed)	N
612	chr2	3639908	3639909	rs13402475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p25.3	NR	rs13402475-C	0.184757	3E-8		0.0057279	[0.0036-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
612	chr2	3639908	3639909	rs13402475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p25.3	NR	rs13402475-C	0.184757	9E-7		0.0059232	[0.0035-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
612	chr2	3639908	3639909	rs13402475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402475-G	0.808	4E-26	(Disintegrin and metalloproteinase domain-containing protein 11, ADAM11.6586.19.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3639908	3639909	rs13402475	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402475-G	0.808	1E-17	(Melanoma-associated antigen 3, MAGEA3.12576.21.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3639914	3639915	rs13402560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p25.3		rs13402560-G	NR	4E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
612	chr2	3639914	3639915	rs13402560	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p25.3	COLEC11	rs13402560-C	0.1869	1E-13		0.0181	[0.013-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
612	chr2	3639914	3639915	rs13402560	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402560-G	0.814	4E-14	(Neurexin-3-beta, NRXN3.7093.20.3)	0.25	[0.19-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3639920	3639921	rs13402561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p25.3		rs13402561-C	0.183574	7E-9		0.0307055	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
612	chr2	3639920	3639921	rs13402561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p25.3		rs13402561-C	0.183574	4E-8		0.0278864	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
612	chr2	3639920	3639921	rs13402561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402561-G	0.814	3E-17	(Peptidyl-prolyl cis-trans isomerase FKBP14, FKBP14.9340.17.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3639920	3639921	rs13402561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402561-G	0.814	2E-23	(Interleukin-1 beta, IL1B.3037.62.1)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3639920	3639921	rs13402561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs13402561-G	0.814	1E-12	(Isochorismatase domain-containing protein 1, ISOC1.9816.37.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3640141	3640142	rs6542680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2p25.3		rs6542680-C	0.179553	3E-8		0.0285694	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
612	chr2	3640141	3640142	rs6542680	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2p25.3		rs6542680-C	0.179546	2E-10		0.0319398	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
612	chr2	3640141	3640142	rs6542680	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFD	5,341 Icelandic ancestry individuals	NA	2p25.3		rs6542680-C	0.1881	1E-13		0.155862	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
612	chr2	3640141	3640142	rs6542680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p25.3		rs6542680-T	NR	1E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
612	chr2	3640141	3640142	rs6542680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p25.3		rs6542680-T	NR	4E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
612	chr2	3640141	3640142	rs6542680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p25.3		rs6542680-T	NR	3E-28		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
612	chr2	3640141	3640142	rs6542680	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p25.3	COLEC11	rs6542680-C	0.180128	1E-34		0.00822619	[0.0069-0.0095] unit increase	Affymetrix [13995440] (imputed)	N
612	chr2	3640141	3640142	rs6542680	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p25.3	COLEC11	rs6542680-C	0.180114	3E-23		0.00291662	[0.0023-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
612	chr2	3640141	3640142	rs6542680	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p25.3	RPS7, COLEC11	rs6542680-C	0.18	2E-12		7.03	z-score increase	Affymetrix [4311822] (imputed)	N
612	chr2	3640141	3640142	rs6542680	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p25.3	NR	rs6542680-T	NR	4E-13		0.0236	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
612	chr2	3640141	3640142	rs6542680	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p25.3	COLEC11	rs6542680-C	0.180273	2E-23		0.0249275	[0.02-0.03] unit increase	Affymetrix [NR] (imputed)	N
612	chr2	3640141	3640142	rs6542680	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p25.3	GAPDHP48	rs6542680-?	NR	1E-9		0.0203	[0.014-0.026] unit increase	Affymetrix [5701386] (imputed)	N
612	chr2	3640141	3640142	rs6542680	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs6542680-T	0.821	6E-32	(Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, NSDHL.8038.41.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3640141	3640142	rs6542680	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs6542680-T	0.821	5E-285	(Collectin-11, COLEC11.4430.44.3)	1.02	[0.96-1.08] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3642360	3642361	rs3820897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL19	5,359 Icelandic ancestry individuals	NA	2p25.3		rs3820897-T	0.1882	4E-146		0.583015	[0.54-0.63] unit increase	Illumina [7506463] (imputed)	N
612	chr2	3642360	3642361	rs3820897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C1QL2	5,368 Icelandic ancestry individuals	NA	2p25.3		rs3820897-T	0.1882	5E-13		0.177563	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
612	chr2	3642360	3642361	rs3820897	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p25.3		rs3820897-C	NR	6E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
612	chr2	3642360	3642361	rs3820897	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	2p25.3	NR	rs3820897-T	0.180112	2E-14		0.0189654	[0.014-0.024] unit increase	Affymetrix [15000001]	N
612	chr2	3642360	3642361	rs3820897	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p25.3	COLEC11	rs3820897-T	0.180137	4E-14		0.0197325	[0.015-0.025] unit decrease	Affymetrix [NR] (imputed)	N
612	chr2	3642360	3642361	rs3820897	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p25.3	NR	rs3820897-C	0.81328125	7E-79	(IL19, 3035_80_2)	0.5806428	[0.52-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
612	chr2	3642360	3642361	rs3820897	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p25.3	NR	rs3820897-C	0.81328125	4E-188	(COLEC11, 4430_44_3)	0.85666984	[0.8-0.91] unit decrease	Illumina [> 1000000] (imputed)	N
612	chr2	3642360	3642361	rs3820897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs3820897-C	0.821	8E-17	(Splicing factor 1, SF1.12777.11.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3642360	3642361	rs3820897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs3820897-C	0.821	3E-49	(Sialic acid-binding Ig-like lectin 14, SIGLEC14.5125.6.3)	0.48	[0.42-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3642360	3642361	rs3820897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs3820897-C	0.821	3E-158	(Interleukin-19, IL19.3035.80.2)	0.81	[0.75-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3642360	3642361	rs3820897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	COLEC11	rs3820897-C	0.821	2E-38	(Collectin-10, COLEC10.6558.5.3)	0.42	[0.36-0.48] unit increase	Affymetrix [10572788] (imputed)	N
612	chr2	3642755	3642756	rs77246730	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs77246730-T	0.012	3E-42	(Collectin-11, COLEC11.4430.44.3)	1.62	[1.38-1.86] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3642755	3642756	rs77246730	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs77246730-T	0.012	3E-27	(Interleukin-19, IL19.3035.80.2)	1.3	[1.06-1.54] unit decrease	Affymetrix [10572788] (imputed)	N
612	chr2	3648185	3648186	rs7588285	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	COLEC11, AC010907.2	rs7588285-C	0.2053213	3E-37	(Interleukin-19)	0.6794	[0.58-0.78] unit increase	Affymetrix [509946]	N
612	chr2	3648185	3648186	rs7588285	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	COLEC11, AC010907.2	rs7588285-C	0.2053213	2E-9	(EA, Interleukin-1 beta)	0.3315	[0.22-0.44] unit increase	Affymetrix [509946]	N
612	chr2	3648185	3648186	rs7588285	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p25.3	COLEC11, AC010907.2	rs7588285-C	0.2053213	1E-40	(Collectin-11)	0.6993	[0.6-0.8] unit increase	Affymetrix [509946]	N
612	chr2	3648185	3648186	rs7588285	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	2p25.3	COLEC11	rs7588285-C	0.2	1E-8		0.0074	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
612	chr2	3654683	3654684	rs13386282	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC11	5,358 Icelandic ancestry individuals	NA	2p25.3		rs13386282-T	0.2026	8E-16		0.183951	[0.14-0.23] unit increase	Illumina [7506463] (imputed)	N
612	chr2	3654683	3654684	rs13386282	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p25.3	NR	rs13386282-T	0.194	7E-13	(Collectin-11, COLEC11.4430.44.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
613	chr2	3677226	3677227	rs147056028	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2p25.3	NR	rs147056028-?		3E-7	(PCB209)	1.53	[0.94-2.12] unit decrease	Illumina [8736858] (imputed)	N
613	chr2	3677776	3677777	rs7602243	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2p25.3	COLEC11	rs7602243-G	0.053	8E-17		0.47	[0.36-0.58] unit decrease	Affymetrix [339439]	N
613	chr2	3686435	3686436	rs13409985	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.3	NR	rs13409985-C	0.02265	2E-8	(MTHFS)	0.04352	NR unit decrease	Illumina [1671387] (imputed)	N
613	chr2	3692237	3692238	rs201143466	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	2p25.3	COLEC11	rs201143466-G	0.0	7E-10		6.18	NR z score decrease	Illumina [at least 900015] (imputed)	N
613	chr2	3723025	3723026	rs11123610	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	2p25.3	ALLC	rs11123610-?		4E-7		0.367	[NR] unit increase	Illumina [430487]	N
613	chr2	3733943	3733944	rs1594318	29931343	Haworth S	2018-06-20	Hum Mol Genet	Consortium genome-wide meta-analysis for childhood dental caries traits.	Childhood dental caries in primary teeth	6,922 European ancestry cases, 10,115 European ancestry controls, 7,530 cases, 11,473 controls	NA	2p25.3	ALLC	rs1594318-G	0.4	4E-8	(EA)	1.1792454	[NR]	Affymetrix, Illumina [at least 8640819] (imputed)	N
613	chr2	3733943	3733944	rs1594318	29931343	Haworth S	2018-06-20	Hum Mol Genet	Consortium genome-wide meta-analysis for childhood dental caries traits.	Childhood dental caries in primary teeth	6,922 European ancestry cases, 10,115 European ancestry controls, 7,530 cases, 11,473 controls	NA	2p25.3	ALLC	rs1594318-G	0.4	4E-7		1.1520737	[NR]	Affymetrix, Illumina [at least 8640819] (imputed)	N
613	chr2	3745214	3745215	rs12615970	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Chronic kidney disease (reduced eGFR or end stage renal disease) in type 1 diabetes	4,266 European ancestry cases, 14,838 European ancestry controls	NA	2p25.3	COLEC11, ALLC	rs12615970-A	0.867	9E-9		1.3157895	[NR]	Illumina [up to 49000000] (imputed)	N
613	chr2	3748970	3748971	rs6730148	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		ALLC, DCDC2C	rs6730148-G	0.074	2E-6	(Cortisol )	0.02	[NR] ng/mL increase	Illumina [899892]	N
613	chr2	3796131	3796132	rs357974	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	2p25.3	DCDC2C	rs357974-C	0.3075	7E-9	(Cer d18:2/26:0)	0.0982	[0.064-0.132] unit increase	Illumina [~ 47000000] (imputed)	N
614	chr2	3841419	3841420	rs11677370	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	2p25.3	intergenic	rs11677370-T	0.40	3E-6	(Indian)	1.35	[1.19-1.53]	Illumina [~ 2000000] (imputed)	N
614	chr2	3869558	3869559	rs12711979	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p25.3	Intergenic	rs12711979-G	NR	5E-6		0.0171268	[0.0098-0.0245] unit increase	Illumina [13519193] (imputed)	N
615	chr2	3953471	3953472	rs553890571	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p25.3	LINC01304	rs553890571-T	0.0016	6E-6		0.4813	[0.27-0.69] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
615	chr2	3977640	3977645	rs570420259	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2p25.3		rs570420259-?	NR	8E-6		0.7368499	[0.41-1.06] unit decrease	Illumina [9842460] (imputed)	N
615	chr2	4034445	4034446	rs10208712	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	2p25.3	NR	rs10208712-G	0.36	6E-23		0.9	[0.88-0.92]	Affymetrix, Illumina [15838848] (imputed)	N
615	chr2	4034445	4034446	rs10208712	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	2p25.3	DCDC2C	rs10208712-A	0.64	1E-34		1.098901	[1.09-1.11]	Affymetrix, Illumina [6864281] (imputed)	N
615	chr2	4054804	4054805	rs6708110	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.3	LOC100505964, LOC727982	rs6708110-G	0.13	8E-7	(EA)	0.6567	[0.4-0.91] unit increase	Illumina [~ 9000000] (imputed)	N
616	chr2	4083657	4083658	rs142655108	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	2p25.3	NPM1P48	rs142655108-A	NR	1E-7		1.79	[1.60-1.99]	Affymetrix, Illumina [~ 16900000] (imputed)	N
616	chr2	4119778	4119779	rs10175680	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p25.3	Intergenic	rs10175680-A	0.4568	9E-9	(MTAG)	0.0076	[0.0051-0.0101] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
616	chr2	4123796	4123797	rs12614263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p25.3		rs12614263-A	0.4959	3E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
616	chr2	4145468	4145469	rs12615481	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	2p25.3	intergenic	rs12615481-A	0.69	9E-6		1.25	[1.15-1.35]	Affymetrix, Illumina [~ 8500000] (imputed)	N
616	chr2	4149341	4149342	rs112901026	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2p25.3	NR	rs112901026-?	NR	6E-6		15.472	NR unit increase	Affymetrix [at least 600000] (imputed)	N
616	chr2	4162615	4162616	rs11900082	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2p25.3		rs11900082-G	0.56358	7E-6		0.030523	[0.017-0.044] unit increase	Affymetrix [15580782] (imputed)	N
617	chr2	4318975	4318976	rs11686135	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p25.3	NR	rs11686135-?	NR	2E-11				Affymetrix [NR]	N
617	chr2	4318975	4318976	rs11686135	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p25.3	intergenic	rs11686135-?	NR	4E-6	(FEV1/FVC decline in asthmatics)	0.3724	[0.21-0.53] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr2	4338127	4338128	rs11123638	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p25.3	NR	rs11123638-?	NR	7E-8				Affymetrix [NR]	N
618	chr2	4391935	4391936	rs12469414	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	2p25.3	Intergenic	rs12469414-T	0.736105714	3E-6		0.175103	unit decrease	Illumina [6969139] (imputed)	N
619	chr2	4465204	4465204	rs796992538	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2p25.2		rs796992538-GAC	NR	2E-10		0.657	[0.46-0.86] unit decrease	Affymetrix [509886] (imputed)	N
619	chr2	4509941	4509942	rs606243	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change	13,807 European ancestry individuals	NA	2p25.2	ALLC	rs606243-A	0.74	1E-6		0.078	[0.039-0.117] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
619	chr2	4514771	4514772	rs679170	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p25.2	NR	rs679170-?	NR	1E-9	(left superior parietal)			NR [9227495] (imputed)	N
619	chr2	4517510	4517511	rs648196	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p25.2	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs648196-?		9E-13				NR [7428630] (imputed)	N
619	chr2	4517510	4517511	rs648196	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2p25.2	CPT2, C1orf123, MAGOH, LRP8	rs648196-?		3E-12				NR [7428630] (imputed)	N
619	chr2	4545704	4545705	rs626186	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 190)	19,670 European ancestry individuals	NA	2p25.2		rs626186-?	NR	8E-12				NR [9705931] (imputed)	N
619	chr2	4550112	4550112	rs769344141	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p25.2	NR	rs769344141-D	0.2077	2E-16	(Superior Parietal)	33.94028	[25.86-42.02] unit decrease	Affymetrix, Illumina [NR]	N
619	chr2	4550410	4550411	rs688409	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p25.2	NR	rs688409-A	0.6094	3E-13	(Superior Parietal)	21.37722	[15.63-27.13] unit decrease	Affymetrix, Illumina [NR]	N
619	chr2	4554303	4554304	rs639016	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p25.2	NR	rs639016-C	0.2092	2E-15	(Inferior Parietal)	29.572021	[22.26-36.88] unit increase	Affymetrix, Illumina [NR]	N
619	chr2	4563476	4563477	rs669952	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p25.2		rs669952-A	0.19	2E-20		9.24	z score increase	Affymetrix [9061022] (imputed)	N
619	chr2	4563476	4563477	rs669952	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	2p25.2		rs669952-A	0.19	1E-6				NR [13131314] (imputed)	N
619	chr2	4563476	4563477	rs669952	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p25.2		rs669952-A	0.19	1E-21		9.57	z score increase	Affymetrix [9061022] (imputed)	N
619	chr2	4563476	4563477	rs669952	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p25.2	NR	rs669952-A	0.1791	1E-17				NR [9056863] (imputed)	N
619	chr2	4563476	4563477	rs669952	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	2p25.2	LINC01249	rs669952-?		5E-17	(Inferior parietal)			Affymetrix, Illumina [NR] (imputed)	N
619	chr2	4563476	4563477	rs669952	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p25.2	DAB1	rs669952-?		6E-11				NR [7428630] (imputed)	N
619	chr2	4563476	4563477	rs669952	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p25.2	NR	rs669952-?		5E-11				NR [7428630] (imputed)	N
620	chr2	4608926	4608927	rs4849965	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	2p25.2	SOX11	rs4849965-C	0.28	6E-6	(Mexican, additive )	1.5	[1.26-1.79]	Affymetrix [NR]	N
620	chr2	4629271	4629272	rs76883373	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p25.2	Intergenic	rs76883373-?		5E-6		1.07	[1.04-1.10]	Illumina [7645193] (imputed)	N
620	chr2	4629271	4629272	rs76883373	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p25.2	Intergenic	rs76883373-?		8E-6		1.97	[1.46-2.65]	Illumina [7645193] (imputed)	N
620	chr2	4650078	4650079	rs76048411	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p25.2	NR	rs76048411-T	0.4833	9E-10		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
620	chr2	4651198	4651199	rs10196909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p25.2		rs10196909-?	NR	2E-12				NR [~ 8900000] (imputed)	N
620	chr2	4651922	4651923	rs13011556	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p25.2		rs13011556-C	0.7622	8E-11		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
620	chr2	4651922	4651923	rs13011556	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p25.2	ALLC	rs13011556-G	0.23760000000000003	1E-13		1.0310341		Affymetrix [11880941] (imputed)	N
620	chr2	4651922	4651923	rs13011556	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p25.2	ALLC	rs13011556-G	0.23760000000000003	1E-13		1.02891		Affymetrix [11880941] (imputed)	N
620	chr2	4711094	4711095	rs9308788	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	2p25.2	LIN01249	rs9308788-A		4E-8		11.93	[6.76-17.10] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
621	chr2	4768225	4768226	rs11899543	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: Travel and tour guides (UKB data field 22617_6213)	259 European ancestry cases, 113,582 European ancestry controls	NA	2p25.2		rs11899543-G	0.003331	2E-9		6.89	[4.63-9.15] unit increase	NR [11842647] (imputed)	N
621	chr2	4768721	4768722	rs1596834	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2p25.2		rs1596834-A	NR	5E-6		0.94762		Affymetrix, Illumina [62056310] (imputed)	N
621	chr2	4807166	4807167	rs825941	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p25.2	NR	rs825941-?	NR	8E-10				Affymetrix [NR]	N
621	chr2	4808026	4808027	rs825937	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	2p25.2	LINC01249	rs825937-C	0.83	2E-7	(EA, PP, Age 40-49)	0.83	[0.52-1.14] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
621	chr2	4823624	4823625	rs9646941	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	2p25.2		rs9646941-?	NR	7E-7		1.29731	[1.19-1.4]	NR [663102]	N
621	chr2	4824072	4824073	rs1470475	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p25.2	LINC01249	rs1470475-G	0.6884	2E-13		0.5208	[0.38-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
621	chr2	4824621	4824622	rs12616546	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p25.2	LINC01249	rs12616546-A	0.68	9E-15		0.53	[0.39-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
621	chr2	4841246	4841247	rs1898972	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p25.2	NR	rs1898972-?	NR	3E-6		4.665	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
621	chr2	4844466	4844467	rs17582262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p25.2	Intergenic	rs17582262-T	0.7133	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
622	chr2	4895317	4895318	rs4971486	25963547	Wilson CL	2015-05-11	Cancer	Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort.	Obesity in adult survivors of childhood cancer exposed to cranial radiation	365 obese individuals, 411 non-obese individuals	NA	2p25.2	SOX11	rs4971486-G	0.23	8E-8		1.99	(1.54-2.57)	Affymetrix [NR] (imputed)	N
622	chr2	4896969	4896970	rs1465875	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p25.2	Intergenic	rs1465875-A	0.4135	6E-18	(MTAG)	0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
622	chr2	4896969	4896970	rs1465875	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p25.2	Intergenic	rs1465875-G	0.5865	2E-15		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
622	chr2	4904342	4904343	rs114894902	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	2p25.2		rs114894902-C	NR	6E-6		5.5394	[3.2-7.88] unit decrease	Illumina [NR] (imputed)	N
622	chr2	4944622	4944623	rs74390814	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p25.2	Intergenic	rs74390814-G	0.7902	6E-10		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
622	chr2	4946244	4946245	rs6542647	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	2p25.2	intergenic	rs6542647-?	NR	8E-6		1.742965	[1.37-2.22]	Illumina [at least 4483243] (imputed)	N
622	chr2	4951119	4951120	rs17020193	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p25.2	Intergenic	rs17020193-T	0.197	7E-13	(MTAG)	0.0207	[0.015-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
622	chr2	4951547	4951548	rs7603132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p25.2	Intergenic	rs7603132-A	0.1899	1E-17	(MTAG)	0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
622	chr2	4951547	4951548	rs7603132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p25.2		rs7603132-A	0.1938	1E-14		0.0137	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
622	chr2	4951547	4951548	rs7603132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p25.2	Intergenic	rs7603132-A	0.1938	8E-19	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
622	chr2	4952313	4952314	rs11690224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p25.2		rs11690224-?	NR	1E-8				NR [~ 8900000] (imputed)	N
622	chr2	4952313	4952314	rs11690224	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p25.2	NR	rs11690224-?	NR	4E-7		5.048	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
623	chr2	5012765	5012766	rs36178807	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p25.2	intergenic	rs36178807-C	0.0123195422633153	5E-6	(G_Phascolarctobacterium_RNT)	0.799399	[0.46-1.14] unit increase	Illumina [7711310] (imputed)	N
624	chr2	5129530	5129531	rs148822902	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p25.2	Intergenic	rs148822902-C	NR	1E-6	(between families)	4.901	unit decrease	Affymetrix [up to 15107142] (imputed)	N
624	chr2	5134582	5134583	rs146674571	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p25.2		rs146674571-G	0.13	2E-8		5.63	z score increase	Affymetrix [9061022] (imputed)	N
624	chr2	5155265	5155266	rs142360703	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p25.2	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs142360703-?		5E-8				NR [7428630] (imputed)	N
624	chr2	5155965	5155966	rs36187132	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p25.2	NR	rs36187132-A	0.0849	5E-10				NR [9056863] (imputed)	N
624	chr2	5226935	5226936	rs986725	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.2	NR	rs986725-G	0.0331	1E-8	(LDHA)	2.091	NR unit increase	Illumina [1671387] (imputed)	N
624	chr2	5232177	5232178	rs72631567	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury	862 European ancestry cases and 10,588 European ancestry controls	NA	2p25.2	NR	rs72631567-?	0.03	1E-8		2.0	1.6-2.5	Illumina [505740] (imputed)	N
624	chr2	5232177	5232178	rs72631567	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced cholestatic/mixed liver injury	323 European ancestry cases, 10,588 European ancestry controls.	NA	2p25.2	NR	rs72631567-?	0.03	1E-6		2.4	1.7-3.4	Illumina [505740] (imputed)	N
625	chr2	5253597	5253598	rs1075309	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	2p25.2	SOX11	rs1075309-T	0.91	7E-7		2.8571	[NR]	Affymetrix [up to 4467279] (imputed)	N
625	chr2	5270431	5270432	rs72493327	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	2p25.2	NR	rs72493327-?	NR	2E-6		0.010016	[0.0059-0.0141] unit increase	Affymetrix [9658292] (imputed)	N
625	chr2	5348336	5348337	rs1598037	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	2p25.2	Intergenic	rs1598037-?		1E-6	(corrected for APOE4 status)	0.14	[NR] unit decrease	Illumina [5137218] (imputed)	N
625	chr2	5366922	5366923	rs73149679	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p25.2	NR	rs73149679-?		6E-6				Illumina [4322238] (imputed)	N
626	chr2	5376964	5376965	rs896911	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	2p25.2	SOX11	rs896911-C	0.38	6E-8		1.1013216	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
626	chr2	5379186	5379187	rs17333649	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p25.2	Intergenic	rs17333649-G	0.996	2E-6	(AA)	1.395	NR unit increase	Illumina [NR] (imputed)	N
626	chr2	5435703	5435704	rs116782507	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p25.2	LINC01248	rs116782507-?		9E-7	(heterogeneous)	0.356	[0.21-0.5] unit decrease	Illumina [1492601] (imputed)	N
626	chr2	5435703	5435704	rs116782507	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p25.2	LINC01248	rs116782507-?		3E-7	(dominant)	0.369	[NR] unit decrease	Illumina [1492601] (imputed)	N
626	chr2	5435703	5435704	rs116782507	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p25.2	LINC01248	rs116782507-?		2E-7	(additive)	0.375	[0.24-0.51] unit decrease	Illumina [1492601] (imputed)	N
626	chr2	5437542	5437543	rs13004938	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.2	SOX11	rs13004938-G	0.094	9E-6	(Bike energy expenditure )	0.04	[NR] kcal/min increase	Illumina [899892]	N
626	chr2	5462986	5462987	rs1524480	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p25.2	NR	rs1524480-G	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
627	chr2	5518677	5518678	rs792064	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	2p25.2	SOX11	rs792064-T	0.42	2E-6		1.64	[1.33-2.01]	Illumina [~ 10500000] (imputed)	N
627	chr2	5590355	5590356	rs78401062	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p25.2	NR	rs78401062-C	NR	5E-6	(GEE model)	0.71892	[0.41-1.03] unit decrease	NR [NR] (imputed)	N
627	chr2	5591549	5591550	rs969768	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p25.2	NR	rs969768-?		6E-7	(APCS)	0.1293	[NR] unit increase	Illumina [NR]	N
627	chr2	5612870	5612871	rs11899726	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.2	NR	rs11899726-A	0.0122	3E-8	(GPX4)	0.0127	NR unit decrease	Illumina [1671387] (imputed)	N
627	chr2	5625005	5625006	rs1808797	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	2p25.2	NR	rs1808797-A	NR	3E-6	(PM %)	0.2789	[NR] unit increase	Illumina [1190033]	N
628	chr2	5664007	5664008	rs11894081	23266558	Yamazaki K	2012-12-21	Gastroenterology	A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.	Crohn's disease	372 Japanese ancestry cases,3,389 Japanese ancestry controls	Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls	2p25.2	SOX11	rs11894081-T	0.55	4E-9		1.22	[1.2-1.22]	Illumina [4929034] (imputed)	N
628	chr2	5676660	5676661	rs138521957	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2p25.2	LINC01248	rs138521957-G	0.02	5E-7		0.4	[0.56-0.25] unit decrease	Affymetrix [7435577] (imputed)	N
628	chr2	5684785	5684786	rs62112661	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p25.2	AC107057.1	rs62112661-A	0.515632	4E-8		1.0526316	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
628	chr2	5684785	5684786	rs62112661	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p25.2	AC107057.1	rs62112661-A	0.493117	3E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
628	chr2	5688980	5688981	rs2882274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2p25.2		rs2882274-C	NR	6E-9		0.0558	[0.037-0.075] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
628	chr2	5688980	5688981	rs2882274	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2p25.2	LINC01248	rs2882274-T	0.484493	2E-8		0.06234874	[0.041-0.084] unit decrease	Affymetrix [7260263] (imputed)	N
628	chr2	5716434	5716435	rs12478516	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		2p25.2	intergenic	rs12478516-A	0.017	5E-6		2.095	[1.21-2.98] unit decrease	Illumina [640625] (imputed)	N
629	chr2	5802362	5802363	rs6721701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p25.2		rs6721701-?	NR	1E-8				NR [~ 8900000] (imputed)	N
629	chr2	5830537	5830538	rs5021156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.2		rs5021156-?	NR	1E-8				NR [~ 8900000] (imputed)	N
629	chr2	5830598	5830599	rs3922853	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	2p25.2	SOX11	rs3922853-A	0.1736	3E-8		0.016511729	[0.011-0.022] unit decrease	Affymetrix [11514463] (imputed)	N
629	chr2	5832141	5832142	rs151305167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.2		rs151305167-?	NR	8E-15				NR [~ 8900000] (imputed)	N
629	chr2	5832666	5832667	rs6721975	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p25.2		rs6721975-T	0.21	1E-31		11.71	z score increase	Affymetrix [9061022] (imputed)	N
629	chr2	5832666	5832667	rs6721975	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p25.2		rs6721975-T	0.21	2E-18		8.74	z score increase	Affymetrix [9061022] (imputed)	N
629	chr2	5832666	5832667	rs6721975	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p25.2		rs6721975-T	0.21	5E-13		7.22	z score increase	Affymetrix [9061022] (imputed)	N
629	chr2	5832666	5832667	rs6721975	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p25.2	NR	rs6721975-T	0.2263	6E-16				NR [9056863] (imputed)	N
629	chr2	5832666	5832667	rs6721975	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p25.2	NR	rs6721975-T	0.2263	1E-13				NR [9056863] (imputed)	N
629	chr2	5832666	5832667	rs6721975	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	2p25.2	SOX11	rs6721975-?	NR	3E-8			[NR]	NR [NR] (imputed)	N
629	chr2	5832666	5832667	rs6721975	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p25.2	NR	rs6721975-?		2E-10		0.0166905	[0.012-0.022] unit decrease	Affymetrix [19400418] (imputed)	N
629	chr2	5835352	5835352	rs147903676	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	209,093 British ancestry women	NA	2p25.2	SOX11	rs147903676-C	NR	2E-8		0.031	[0.019-0.043] unit decrease	NR [NR] (imputed)	N
629	chr2	5836917	5836918	rs141874683	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 213)	19,670 European ancestry individuals	NA	2p25.2		rs141874683-?	NR	5E-8				NR [9705931] (imputed)	N
629	chr2	5849395	5849396	rs185177042	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p25.2	AC010729.1	rs185177042-A	0.0041	8E-6		0.4011	[0.23-0.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
629	chr2	5870940	5870941	rs16864081	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	2p25.2	SOX11	rs16864081-T	0.2378	2E-8		0.014883163	[0.0097-0.0201] unit increase	Affymetrix [11514463] (imputed)	N
629	chr2	5891510	5891511	rs11887646	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2p25.2	SOX11	rs11887646-A	0.7631	2E-10		0.0707	[0.049-0.093] unit decrease	NR [9744772] (imputed)	N
629	chr2	5892290	5892291	rs11679471	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	2p25.2	NR	rs11679471-G	0.1223	4E-6		0.946	[0.4-1.49] unit decrease	Illumina [at least 567677] (imputed)	N
630	chr2	5907879	5907880	rs16864170	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p25.2	SOX11	rs16864170-C	0.05	2E-7	(CKD)	1.3	[1.18-1.43]	Affymetrix, Illumina [~ 2500000] (imputed)	N
630	chr2	5947098	5947099	rs6432327	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p25.2	SOX11, LINC01810	rs6432327-C	0.4244	3E-9		0.08	[0.052-0.108] unit increase	Affymetrix [~ 11900000] (imputed)	N
630	chr2	5967291	5967292	rs148540034	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	2p25.2	NR	rs148540034-C	NR	2E-6		0.4107	[0.24-0.58] SD units increase	NR [10700000] (imputed)	N
630	chr2	5988075	5988076	rs2709466	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	2p25.2	intergenic	rs2709466-?	NR	6E-6		1.254097	[1.136681-1.383642]	Illumina [at least 4756722] (imputed)	N
631	chr2	6052750	6052751	rs7586540	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2p25.2	ERBB4	rs7586540-A	0.94	5E-6	(AA)	0.43	[0.25-0.61] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
631	chr2	6063119	6063120	rs149186721	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p25.2	intergenic	rs149186721-A	NR	7E-6	(EA)			Illumina [up to 11995908] (imputed)	N
631	chr2	6063119	6063120	rs149186721	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p25.2	intergenic	rs149186721-A	NR	7E-6				Illumina [up to 11995908] (imputed)	N
631	chr2	6068006	6068007	rs79576311	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p25.2	LINC01105	rs79576311-A	0.021	2E-6		0.109	[0.064-0.154] unit increase	Affymetrix [7947838] (imputed)	N
631	chr2	6130175	6130176	rs2693856	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	2p25.2	NR	rs2693856-T	0.07377	2E-7		1.366	[0.8-1.94] unit increase	Illumina [at least 567677] (imputed)	N
631	chr2	6131458	6131459	rs6710199	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	2p25.2	LOC150622	rs6710199-A	0.92	3E-6		4.74	NR Z score decrease	Affymetrix, Illumina [2725778] (imputed)	N
631	chr2	6134939	6134940	rs1405262	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2p25.2	NR	rs1405262-?	NR	6E-6	(progression)			Illumina [NR]	N
631	chr2	6139705	6139706	rs12993904	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	2p25.2	LOC150622, LOC400940	rs12993904-G	0.4783	9E-7		1.93	[1.67-2.19]	Illumina [8809853] (imputed)	N
631	chr2	6145080	6145081	rs2091378	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p25.2	NR	rs2091378-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
631	chr2	6145080	6145081	rs2091378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p25.2		rs2091378-?	NR	2E-13				NR [~ 8900000] (imputed)	N
631	chr2	6145157	6145158	rs2091377	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p25.2	LOC400940	rs2091377-C	0.626912	3E-8		0.0118408	[0.0077-0.016] unit decrease	NR [16516521] (imputed)	N
631	chr2	6155556	6155557	rs10929925	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p25.2	NA	rs10929925-A	0.4105	3E-18		0.0142	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
631	chr2	6155556	6155557	rs10929925	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p25.2	NA	rs10929925-A	0.4105	3E-18		0.0142	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
631	chr2	6155556	6155557	rs10929925	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p25.2	NR	rs10929925-C	NR	2E-8		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
631	chr2	6155556	6155557	rs10929925	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.2	SOX11	rs10929925-C	0.019	1E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
631	chr2	6155556	6155557	rs10929925	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p25.2	SOX11	rs10929925-C	0.557	2E-12		0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
631	chr2	6155556	6155557	rs10929925	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p25.2	SOX11	rs10929925-C	0.559	2E-13		0.019	[0.013-0.025] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
631	chr2	6155556	6155557	rs10929925	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.2	LOC400940	rs10929925-C	0.557	1E-6	(EA)	0.015	[0.0091-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
631	chr2	6155556	6155557	rs10929925	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p25.2	LOC400940	rs10929925-C	0.553	9E-8		0.016	[0.01-0.021] kg/m2 increase	Affymetrix, Illumina [2550021]	N
631	chr2	6155556	6155557	rs10929925	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.2	SOX11	rs10929925-A	0.4486	9E-6	(EA,women)	0.0209	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
631	chr2	6155556	6155557	rs10929925	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p25.2	SOX11	rs10929925-A	0.4486	5E-8	(EA)	0.0195	[0.012-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
631	chr2	6159980	6159981	rs12468070	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p25.2	NA	rs12468070-T	0.2632	5E-16		0.0153	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
632	chr2	6160590	6160591	rs2609186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p25.2		rs2609186-A	NR	2E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
632	chr2	6160590	6160591	rs2609186	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p25.2		rs2609186-A	NR	2E-10		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
632	chr2	6161709	6161710	rs7561852	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2p25.2	RSAD2	rs7561852-G	0.0706102	6E-6		1.966	[1.466 - 2.636]	Illumina [5396854] (imputed)	N
632	chr2	6181660	6181661	rs2950163	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	2p25.2	FLJ41046, LOC391349, LINC01105, LOC400940, MIR7158	rs2950163-?	NR	2E-7				Affymetrix, Illumina [~ 6700000] (imputed)	N
632	chr2	6194358	6194359	rs2141004	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p25.2	DKFZP761K2322	rs2141004-A	0.735808	3E-10		0.0100488	[0.0069-0.0132] unit increase	Affymetrix [12370749]	N
632	chr2	6204507	6204508	rs2693818	33685280	Nishizawa D	2021-01-01	Mol Pain	Genome-wide association study identifies candidate loci associated with chronic pain and postherpetic neuralgia.	Chronic pain	191 Japanese ancestry cases, 282 Japanese ancestry controls	NA	2p25.2	NR	rs2693818-?	NR	9E-7	(dominant model)		NR	Illumina [445723]	N
632	chr2	6207336	6207337	rs11903054	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p25.2		rs11903054-T	0.34	4E-11		6.62	z score increase	Affymetrix [9061022] (imputed)	N
632	chr2	6233710	6233711	rs2609163	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p25.2		rs2609163-A	0.42	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
632	chr2	6233710	6233711	rs2609163	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p25.2	NR	rs2609163-A	0.4013	5E-10				NR [9056863] (imputed)	N
633	chr2	6347828	6347829	rs6712563	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p25.2	LOC129607	rs6712563-?	NR	4E-6	(glutamine)	1.5364938	[0.88-2.19] unit decrease	Affymetrix [at least 2500000] (imputed)	N
633	chr2	6371189	6371190	rs150406145	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3	4,005 European ancestry cases, 145,545 European ancestry controls	NA	2p25.2	PAX8	rs150406145-?	NR	4E-8		2.37	[1.74-3.22]	Affymetrix [9600464] (imputed)	N
633	chr2	6386392	6386393	rs1448575	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	2p25.2	intergenic	rs1448575-?	NR	7E-6				Illumina [501584]	N
633	chr2	6398526	6398527	rs10208141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.2		rs10208141-?	NR	8E-14				NR [~ 8900000] (imputed)	N
633	chr2	6400585	6400586	rs10165110	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p25.2		rs10165110-G	NR	2E-10		0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
634	chr2	6443215	6443216	rs6752376	28679651	Meziane I	2017-07-04	Haematologica	Genome-wide association study of clinical parameters in immunoglobulin light chain amyloidosis in three patient cohorts.	Immunoglobulin light chain (AL) amyloidosis (heart and kidney involvement)	426 cases, controls	NA	2p25.2	LINC01247, ACO17053.1	rs6752376-T	NR	3E-8		1.54	[1.32-1.79]	NR [NR]	N
634	chr2	6454816	6454817	rs74640136	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC017053.1	rs74640136-?	NR	1E-9		1.80783	[NR] unit decrease	Affymetrix [NR] (imputed)	N
634	chr2	6461420	6461421	rs7591996	23727862	Savage SA	2013-06-02	Nat Genet	Genome-wide association study identifies two susceptibility loci for osteosarcoma.	Osteosarcoma	694 European ancestry cases, 2,703 European ancestry controls	247 European ancestry cases, 550 European ancestry controls	2p25.2	intergenic	rs7591996-C	NR	1E-8		1.39	[1.23-1.54]	Illumina [698968]	N
634	chr2	6539704	6539705	rs10211501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.2		rs10211501-?	NR	3E-8				NR [~ 8900000] (imputed)	N
635	chr2	6553699	6553700	rs12997617	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2p25.2		rs12997617-T	0.14	6E-12		0.2	[0.14-0.26] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
635	chr2	6553908	6553909	rs75987043	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p25.2		rs75987043-T	0.08	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
635	chr2	6563097	6563098	rs59167614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p25.2		rs59167614-?	NR	7E-31				NR [~ 8900000] (imputed)	N
635	chr2	6563097	6563098	rs59167614	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p25.2	NR	rs59167614-G	0.151444	3E-57		0.067882	[0.06-0.076] unit decrease	NR [19129689] (imputed)	N
635	chr2	6569565	6569566	rs6752754	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2p25.2	ESPN	rs6752754-A	NR	8E-10		0.119608	[0.081-0.158] unit decrease	Affymetrix [27512692] (imputed)	N
635	chr2	6569565	6569566	rs6752754	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p25.2	NR	rs6752754-G	NR	8E-10		0.05259	NR unit decrease	NR [NR] (imputed)	N
635	chr2	6613206	6613207	rs306173	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p25.2	NR	rs306173-?	NR	4E-17				Affymetrix [NR]	N
635	chr2	6669257	6669258	rs183530163	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p25.2	AC021021.2	rs183530163-A	0.01	1E-6		0.2255	[0.14-0.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
636	chr2	6694518	6694519	rs10495537	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p25.2	LOC129607	rs10495537-T	0.32	5E-7	(men)			Affymetrix, Illumina [2500000] (imputed)	N
636	chr2	6697087	6697088	rs962528	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p25.2	LOC129607	rs962528-T	0.32	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
636	chr2	6704256	6704257	rs16865339	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Sphingomyelin 24:0 levels	1,937 individuals	NA	2p25.2	intergenic	rs16865339-C	0.001	9E-7		2.0539	[1.24-2.87] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
636	chr2	6722117	6722118	rs192904742	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	2p25.2		rs192904742-A	NR	9E-7		4.1220117	NR	Affymetrix [7846216] (imputed)	N
636	chr2	6747883	6747884	rs114123656	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2p25.2	LINC01246	rs114123656-?		8E-6				Illumina [2668805]	N
636	chr2	6770458	6770459	rs116611025	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p25.2	NR	rs116611025-?	NR	3E-6		0.030717	[0.018-0.044] unit increase	Affymetrix [805426] (imputed)	N
636	chr2	6777828	6777829	rs17815605	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	2p25.2	Intergenic	rs17815605-?	NR	6E-6		2.886	[NR]	Illumina [498081]	N
636	chr2	6777991	6777992	rs11692570	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	2p25.2	NR	rs11692570-T	NR	8E-9	(Cox proportional hazards regression model)	34.43	[10.35-114.58]	Illumina [810622]	N
636	chr2	6807391	6807392	rs113859600	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p25.2	Intergenic	rs113859600-T	NR	9E-6		0.115761	[0.065-0.167] unit decrease	Illumina [13520550] (imputed)	N
636	chr2	6814459	6814460	rs307984	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p25.2	CMPK2	rs307984-T	0.145	2E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
636	chr2	6814459	6814460	rs307984	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2p25.2	CMPK2	rs307984-T	0.1405	7E-10		0.017217096	[0.012-0.023] unit increase	Illumina [9339358] (imputed)	N
636	chr2	6814476	6814477	rs1841556	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	2p25.2	NR	rs1841556-T	0.634608	9E-6		1.07	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
637	chr2	6943543	6943544	rs72779762	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	2p25.2	NR	rs72779762-T	0.017	4E-6		2.477087	[2.09-2.86]	Illumina [8567708] (imputed)	N
639	chr2	7100210	7100211	rs3772010	30657218	Park SY	2019-01-18	Clin Exp Allergy	Longitudinal analysis to better characterize Asthma-COPD Overlap Syndrome (ACOS): Findings from an adult asthma cohort in Korea (COREA).	Asthma-chronic obstructive  pulmonary disease overlap syndrome	228 Korean ancestry cases, 5,915 Korean ancestry controls	NA	2p25.1	RNF144A	rs3772010-?	NR	3E-6		2.89		Korean Chip	N
639	chr2	7126381	7126382	rs1171271976	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.1	NR	rs1171271976-T	0.02962	9E-9	(USP5)	0.1031	NR unit increase	Illumina [1671387] (imputed)	N
639	chr2	7147972	7147973	rs6741819	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	2p25.1	NA	rs6741819-T	0.4602	2E-6		0.2932	[0.174-0.4942]	Illumina [243345]	N
639	chr2	7147972	7147973	rs6741819	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	2p25.1	RNF144A	rs6741819-C	0.63	4E-14		4.0	[2.78-5.56]	Affymetrix [508192]	N
639	chr2	7147972	7147973	rs6741819	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p25.1	RNF144A	rs6741819-?	0.305	2E-7	(perphenazine-triglycerides)			Affymetrix [492900]	N
639	chr2	7159612	7159613	rs3771962	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	2p25.1		rs3771962-G	0.918402	1E-8		0.042446	[0.028-0.057] unit decrease	NR [11722792] (imputed)	N
639	chr2	7169195	7169196	rs391109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p25.1		rs391109-G	NR	1E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
639	chr2	7174717	7174718	rs441241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p25.1		rs441241-C	NR	1E-8		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
639	chr2	7188584	7188585	rs13425074	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		RNF144A	rs13425074-T	0.02	5E-6				Illumina [1679420] (imputed)	N
639	chr2	7200095	7200096	rs574713163	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2p25.1	NR	rs574713163-?	NR	2E-6		1.31844	[0.77-1.87] unit increase	NR [13958389] (imputed)	N
640	chr2	7217471	7217472	rs16865916	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Manic episodes in bipolar disorder	706 European ancestry cases	NA	2p25.1	RNF144A, LOC100506274	rs16865916-?	NR	6E-6		3.621	[2.073-6.324]	Affymetrix [329806] (imputed)	N
640	chr2	7229777	7229778	rs61329746	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	2p25.1	NR	rs61329746-?	NR	7E-6				Illumina [8270200] (imputed)	N
640	chr2	7273715	7273716	rs192431720	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p25.1	RNF144A	rs192431720-G	NR	4E-7	(women)	0.0525433	[0.032-0.073] unit increase	Illumina [13520550] (imputed)	N
640	chr2	7323038	7323039	rs12623068	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2p25.1		rs12623068-?	NR	4E-6	(overall)	1.24		Illumina [11595112] (imputed)	N
641	chr2	7371243	7371244	rs72770030	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p25.1	intergenic	rs72770030-T	0.0161931401213585	9E-7	(G_Dialister_RNT)	0.743612	[0.45-1.04] unit increase	Illumina [7711310] (imputed)	N
641	chr2	7383759	7383760	rs185208358	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2p25.1		rs185208358-G	0.986746	2E-6		0.0570188	[0.032-0.082] unit decrease	Illumina [13900000] (imputed)	N
641	chr2	7436316	7436317	rs35202394	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2p25.1	NR	rs35202394-G	NR	2E-6		1.2016	[1.1136-1.29656]	Affymetrix [5734850] (imputed)	N
641	chr2	7437312	7437313	rs6760539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p25.1	Intergenic	rs6760539-A	0.3017	2E-10	(MTAG)	0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr2	7437312	7437313	rs6760539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p25.1	Intergenic	rs6760539-A	0.306	4E-10	(MTAG)	0.0089	[0.0062-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr2	7437312	7437313	rs6760539	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p25.1	Intergenic	rs6760539-A	0.3081	3E-10	(MTAG)	0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
641	chr2	7444266	7444267	rs115512985	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	2p25.1		rs115512985-?	NR	5E-6		0.33	[0.19-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
642	chr2	7496406	7496407	rs55734018	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2p25.1		rs55734018-?	NR	1E-9				Illumina [1128286]	N
642	chr2	7517230	7517231	rs13429103	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x smoking interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	2p25.1	RNF144A, LOC339788	rs13429103-A	0.15	2E-7		2.04		Illumina [993501]	N
642	chr2	7573078	7573079	rs75362385	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2p25.1	LOC100506274	rs75362385-T	0.321	8E-13		0.887	[0.85-0.92]	Illumina [11270530] (imputed)	N
642	chr2	7589769	7589770	rs11901176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p25.1		rs11901176-G	NR	7E-13		0.0196	[0.014-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
643	chr2	7614262	7614263	rs12105729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs12105729-G	0.212206	2E-26				Affymetrix, Illumina [23472807] (imputed)	N
643	chr2	7615060	7615061	rs6721663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p25.1	NR	rs6721663-A	0.158697	1E-23		0.026133	[0.021-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
643	chr2	7617648	7617649	rs7557401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p25.1		rs7557401-A	0.158493	6E-14		0.02277433	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
643	chr2	7617648	7617649	rs7557401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p25.1		rs7557401-A	0.158492	2E-15		0.024033304	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr2	7636334	7636335	rs1439965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p25.1		rs1439965-C	0.17054	1E-20		0.02744353	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
643	chr2	7649520	7649521	rs13384469	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	2p25.1	Intergenic	rs13384469-T	0.1183	9E-6		4.45	z score increase	Illumina [at least 6190549] (imputed)	N
643	chr2	7652011	7652012	rs533356924	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p25.1	AC013460.1	rs533356924-A	0.0028	5E-6		1.1427	[0.65-1.63] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
643	chr2	7704859	7704860	rs79522206	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p25.1		rs79522206-?	NR	1E-9		1.21094	[1.15-1.27]	NR [685523]	N
643	chr2	7704859	7704860	rs79522206	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2p25.1	LOC100506274	rs79522206-A	0.0264336	2E-16		0.24904366	[0.19-0.31] unit increase	Affymetrix [7260263] (imputed)	N
643	chr2	7704859	7704860	rs79522206	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p25.1	RNU6ATAC37P	rs79522206-A	0.026446	4E-16		1.2345679	[1.18-1.3]	Affymetrix [7600000] (imputed)	N
643	chr2	7704859	7704860	rs79522206	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p25.1	RNU6ATAC37P	rs79522206-A	0.029504	2E-17		1.24	[1.19-1.29]	Affymetrix, Illumina [up to 9061544] (imputed)	N
643	chr2	7704859	7704860	rs79522206	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2p25.1	Intergenic	rs79522206-G	NR	3E-8		1.3333333	[1.2-1.47]	Affymetrix [5734850] (imputed)	N
643	chr2	7728765	7728766	rs908975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p25.1		rs908975-G	0.511519	4E-10		0.0137854	[0.0095-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
643	chr2	7728765	7728766	rs908975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p25.1		rs908975-?	NR	2E-9				NR [~ 8900000] (imputed)	N
644	chr2	7734308	7734309	rs35570395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p25.1		rs35570395-T	0.540782	9E-10		0.014440575	[0.0098-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
644	chr2	7750691	7750691	rs139752537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2p25.1		rs139752537-TTGG	NR	2E-8		0.0565	[0.037-0.076] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
644	chr2	7763767	7763768	rs1435094	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p25.1	NR	rs1435094-?	NR	3E-7		5.152	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
644	chr2	7770661	7770662	rs772322	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p25.1	NR	rs772322-?	NR	7E-6		0.0078272	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
644	chr2	7854041	7854042	rs73913675	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.1	NR	rs73913675-A	0.01742	3E-10	(ACSS3)	0.1699	NR unit increase	Illumina [1671387] (imputed)	N
645	chr2	7961406	7961407	rs6751195	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2p25.1	NR	rs6751195-?	NR	4E-49		14.727	NR z score decrease	Illumina [at least 830937] (imputed)	N
646	chr2	7996360	7996361	rs1117894	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p25.1		rs1117894-G	0.273	5E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
646	chr2	8036259	8036260	rs2193071	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	LINC00299	rs2193071-A	0.0070	4E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
646	chr2	8053596	8053597	rs4669226	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		2p25.1	LOC339788	rs4669226-?		5E-6	(Cluxel size)			Illumina [208975]	N
646	chr2	8099757	8099758	rs10177451	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p25.1	NR	rs10177451-?	NR	3E-8				Affymetrix [NR]	N
646	chr2	8111230	8111231	rs41005	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	2p25.1	Intergenic	rs41005-T	0.33	4E-6	(GEE model, both 3 and 6 months)	0.27	[0.16, 0.39] unit increase	Illumina [4253138] (imputed)	N
647	chr2	8177463	8177464	rs17169	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	2p25.1	NR	rs17169-T	NR	1E-7	(phenotype 1)	2.97	[NR]	Illumina [> 8000000] (imputed)	N
647	chr2	8177463	8177464	rs17169	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	2p25.1	NR	rs17169-T	NR	1E-7	(phenotype 3)	2.97	[NR]	Illumina [> 8000000] (imputed)	N
648	chr2	8283188	8283189	rs181132	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	2p25.1	LINC00299	rs181132-T	0.41	6E-6		2.631579	[1.72-4]	Affymetrix [426344]	N
648	chr2	8381282	8381283	rs78129933	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	2p25.1	Intergenic	rs78129933-?		3E-6	(EA)	0.398	unit increase	Illumina [1819374] (imputed)	N
649	chr2	8390940	8390941	rs148951420	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.1	NR	rs148951420-C	0.01394	2E-14	(HNRNPH3)	0.1043	NR unit increase	Illumina [1671387] (imputed)	N
649	chr2	8423921	8423922	rs72781023	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p25.1	NR	rs72781023-A	NR	2E-12		0.0291	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
649	chr2	8434184	8434185	rs3102947	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	2p25.1	ID2	rs3102947-G	NR	2E-7		0.06	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
649	chr2	8438692	8438693	rs346835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p25.1		rs346835-T	NR	9E-27		0.0188	[0.015-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
649	chr2	8438692	8438693	rs346835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2p25.1		rs346835-T	NR	5E-13		0.0537	[0.039-0.068] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
649	chr2	8438692	8438693	rs346835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p25.1	LINC00299	rs346835-T	0.32926	4E-32		0.027631028	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr2	8438692	8438693	rs346835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p25.1	LINC00299	rs346835-T	0.329269	1E-29		0.02643847	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
649	chr2	8438692	8438693	rs346835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p25.1	NR	rs346835-T	0.328293	8E-37		0.02669	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
649	chr2	8438692	8438693	rs346835	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2p25.1	LINC00299	rs346835-T	0.3297	7E-18		0.0326125	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8439366	8439367	rs60242841	32650023	Gabryszewski SJ	2020-07-07	J Allergy Clin Immunol	Unsupervised Modeling and Genome-Wide Association Identify Novel Features of Allergic March Trajectories.	Allergic march (atopic dermatitis to asthma)	335 African American child cases, 963 African American child controls	220 African American child cases, 1,151 African American child controls	2p25.1	LINC00299	rs60242841-?	NR	2E-8				Illumina [52106158] (imputed)	N
649	chr2	8439628	8439629	rs10165200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs10165200-A	0.374917	1E-36				Affymetrix, Illumina [19872809] (imputed)	N
649	chr2	8439628	8439629	rs10165200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2p25.1	LINC00299	rs10165200-A	0.3713	1E-9		0.02186009	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8439628	8439629	rs10165200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2p25.1	LINC00299	rs10165200-A	0.3712	7E-16		0.02972809	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8439628	8439629	rs10165200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	2p25.1	LINC00299	rs10165200-A	0.3713	3E-11		0.02384528	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8439628	8439629	rs10165200	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	2p25.1	LINC00299	rs10165200-A	0.3713	5E-10		0.02251717	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8441734	8441735	rs13416555	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2p25.1		rs13416555-G	NR	3E-8		0.119244	[0.077-0.161] unit decrease	NR [2787054] (imputed)	N
649	chr2	8441734	8441735	rs13416555	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2p25.1	NR	rs13416555-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
649	chr2	8441734	8441735	rs13416555	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	2p25.1	RNF144A, ID2	rs13416555-C	0.705	2E-13		1.13	[1.094-1.167]	Affymetrix [10894596] (imputed)	N
649	chr2	8441734	8441735	rs13416555	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	2p25.1	RNF144A, ID2	rs13416555-C	0.705	2E-6		0.715	[0.42-1.01] unit decrease	Affymetrix [10894596] (imputed)	N
649	chr2	8441734	8441735	rs13416555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p25.1		rs13416555-?	NR	6E-33				NR [~ 8900000] (imputed)	N
649	chr2	8442247	8442248	rs10174949	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	2p25.1		rs10174949-?	NR	6E-8		0.91	[0.89-0.93]	Illumina [5170515] (imputed)	N
649	chr2	8442247	8442248	rs10174949	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2p25.1	NR	rs10174949-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
649	chr2	8442247	8442248	rs10174949	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2p25.1	LINC00299	rs10174949-?	NR	6E-16		1.098901	[1.08-1.12]	Affymetrix [74888535] (imputed)	N
649	chr2	8442247	8442248	rs10174949	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2p25.1	LINC00299	rs10174949-G	0.68	7E-31		1.066	[1.06-1.08]	Affymetrix, Illumina [8307659] (imputed)	N
649	chr2	8442247	8442248	rs10174949	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2p25.1	ID2	rs10174949-A	0.2728	1E-7		0.0703	[0.044-0.096] unit decrease	Illumina [2400000] (imputed)	N
649	chr2	8442546	8442547	rs891058	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	2p25.1		rs891058-A	0.2986	3E-9		0.93		Affymetrix, Illumina [9397031] (imputed)	N
649	chr2	8442546	8442547	rs891058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	2p25.1		rs891058-A	NR	2E-12		0.0634	[0.046-0.081] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
649	chr2	8442546	8442547	rs891058	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	2p25.1		rs891058-A	NR	5E-7		0.12017	[0.073-0.167] unit decrease	NR [5054572] (imputed)	N
649	chr2	8442546	8442547	rs891058	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2p25.1	LINC00299	rs891058-G	0.711472	1E-24		1.0702096	[1.05641917454216-1.08418002509542]	NR [9572556] (imputed)	N
649	chr2	8442546	8442547	rs891058	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2p25.1	NR	rs891058-G	0.7053	2E-27		1.0738832	[1.06-1.09]	Affymetrix [15688218] (imputed)	N
649	chr2	8442546	8442547	rs891058	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	2p25.1	LINC00299	rs891058-A	0.2947	2E-19				Affymetrix [15688218] (imputed)	N
649	chr2	8442546	8442547	rs891058	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	2p25.1	LINC00299	rs891058-G	0.7057	3E-16		1.1071745	[1.08-1.13]	Affymetrix [15688218] (imputed)	N
649	chr2	8442546	8442547	rs891058	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2p25.1	NR	rs891058-G	0.7053	3E-29		1.069862	[1.06-1.08]	Affymetrix [15688218] (imputed)	N
649	chr2	8442546	8442547	rs891058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2p25.1		rs891058-?	NR	4E-18				NR [~ 8900000] (imputed)	N
649	chr2	8442546	8442547	rs891058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p25.1		rs891058-?	NR	2E-33				NR [~ 8900000] (imputed)	N
649	chr2	8442546	8442547	rs891058	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	2p25.1	LINC00299	rs891058-G	0.69	1E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina [16531985] (imputed)	N
649	chr2	8442546	8442547	rs891058	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2p25.1	LINC00299	rs891058-A	0.2937	2E-17		0.03347072	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8442735	8442736	rs186975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p25.1	LINC00299	rs186975-C	0.393959	3E-15		0.017847737	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
649	chr2	8443802	8443803	rs10178845	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	2p25.1	RNF144A, ID2	rs10178845-A	0.294551881699442	8E-18		0.061656643	[0.048-0.076] unit decrease	Affymetrix [35186738] (imputed)	N
649	chr2	8443802	8443803	rs10178845	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2p25.1	LINC00299	rs10178845-G	0.71	4E-29				NR [> 9500000] (imputed)	N
649	chr2	8443802	8443803	rs10178845	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	2p25.1	LINC00299, LOC101929567, LINC00298, ID2-AS1, ID2, LOC101929551	rs10178845-G	0.70545	9E-15		1.0552086	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
649	chr2	8443802	8443803	rs10178845	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2p25.1	LINC00299	rs10178845-G	0.705254	3E-17		1.0591489	[1.05-1.07]	Affymetrix [8274727] (imputed)	N
649	chr2	8443858	8443859	rs3111414	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2p25.1	ID2	rs3111414-G	0.778	9E-11		0.0290863	[0.02-0.038] unit increase	Illumina [13520550] (imputed)	N
649	chr2	8444494	8444495	rs391936	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	2p25.1	LINC00299	rs391936-G		4E-6		1.2	[NR]	Illumina [up to 9464381] (imputed)	N
649	chr2	8445159	8445160	rs2630709	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p25.1		rs2630709-T	NR	3E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
649	chr2	8445159	8445160	rs2630709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p25.1	LINC00299	rs2630709-A	0.484241	7E-15		0.0172375	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
649	chr2	8445159	8445160	rs2630709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p25.1	LINC00299	rs2630709-T	0.517	4E-10		0.02232225	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8450122	8450123	rs367023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2p25.1		rs367023-G	NR	1E-10		0.0615	[0.043-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
649	chr2	8450122	8450123	rs367023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2p25.1		rs367023-?	NR	5E-10				NR [~ 8900000] (imputed)	N
649	chr2	8450122	8450123	rs367023	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	2p25.1	ID2	rs367023-?	NR	2E-11		1.0582011	[1.04-1.08]	Illumina [12845910] (imputed)	N
649	chr2	8450520	8450521	rs453193	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p25.1	LINC00299	rs453193-A	0.396	4E-9		0.02165754	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
649	chr2	8451497	8451498	rs13395467	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	2p25.1	ID2, RNF144A	rs13395467-A	0.7176	1E-14		1.0638298	[1.05-1.09]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
649	chr2	8451700	8451701	rs13398375	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	2p25.1	LINC00299	rs13398375-T	0.716	8E-10		0.029	[0.019-0.039] unit decrease	NR [NR] (imputed)	N
649	chr2	8451700	8451701	rs13398375	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2p25.1	LINC00299	rs13398375-T	0.716	8E-10		0.029	[0.019-0.039] unit decrease	NR [7647814] (imputed)	N
649	chr2	8452496	8452497	rs3102960	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p25.1	LINC00299	rs3102960-T	0.793	3E-8		0.036245	[0.023-0.049] unit decrease	Illumina [13520550] (imputed)	N
649	chr2	8458079	8458080	rs13412757	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p25.1	LINC00299	rs13412757-G	NR	2E-6		0.0176881	[0.01-0.025] unit decrease	Illumina [13519193] (imputed)	N
649	chr2	8458079	8458080	rs13412757	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p25.1	LINC00299	rs13412757-G	0.672	2E-7		0.0174185	[0.011-0.024] unit decrease	Illumina [13520550] (imputed)	N
649	chr2	8458079	8458080	rs13412757	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	2p25.1	ID2	rs13412757-?	NR	1E-8		1.062	[1.040-1.084]	Illumina [13747813] (imputed)	N
649	chr2	8459403	8459404	rs3856439	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2p25.1	NR	rs3856439-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
649	chr2	8459403	8459404	rs3856439	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2p25.1	LINC00299	rs3856439-?	NR	6E-28		1.087	[1.07-1.1]	Affymetrix [9000000] (imputed)	N
649	chr2	8459403	8459404	rs3856439	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2p25.1	LINC00299	rs3856439-C	NR	5E-19		1.066	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
649	chr2	8468209	8468210	rs13412022	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2p25.1	LINC00299	rs13412022-T	0.330147	5E-10		0.06066304	[0.042-0.08] unit decrease	Affymetrix [7288503] (imputed)	N
649	chr2	8471318	8471319	rs7595769	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	2p25.1	LINC00299	rs7595769-A	0.280882	1E-8		0.056956265	[0.037-0.077] unit decrease	Affymetrix [7288503] (imputed)	N
649	chr2	8474074	8474075	rs2561999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	2p25.1		rs2561999-G	NR	7E-11		0.0643	[0.045-0.084] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
649	chr2	8495096	8495097	rs10199605	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2p25.1	LINC00299	rs10199605-G	0.7	4E-8	(EA, fixed effects)	1.0416667		Illumina [15539996] (imputed)	N
649	chr2	8498510	8498511	rs116055198	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p25.1	NR	rs116055198-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
650	chr2	8524789	8524790	rs4668567	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	2p25.1		rs4668567-A	NR	6E-6		1.0533	[1.03-1.08]	Illumina [11600722] (imputed)	N
650	chr2	8530255	8530256	rs13008689	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p25.1	AC011747.3	rs13008689-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
650	chr2	8556083	8556084	rs409169	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	2p25.1	NR	rs409169-?	NR	5E-7		0.0855	[0.052-0.119] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
650	chr2	8563028	8563029	rs7572278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p25.1		rs7572278-A	NR	9E-20		0.0234	[0.018-0.028] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
650	chr2	8563028	8563029	rs7572278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p25.1	NR	rs7572278-A	NR	1E-20		0.0282	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p25.1	NR	rs7572278-A	0.203335	1E-10		0.017575819	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p25.1	NR	rs7572278-A	0.20328	4E-12		0.019315986	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p25.1	NR	rs7572278-A	0.203285	1E-10		0.01795544	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p25.1	intergenic	rs7572278-A	0.203317	1E-18		0.024184274	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p25.1		rs7572278-A	0.203346	7E-21		0.0259776	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p25.1		rs7572278-A	0.203315	6E-11		0.0175302	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p25.1		rs7572278-A	0.203325	3E-18		0.023827545	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p25.1	NR	rs7572278-A	0.207324	1E-11		0.015881	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs7572278-A	0.210442	5E-17				Affymetrix, Illumina [23467995] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p25.1	NR	rs7572278-A	0.206833	3E-20		0.021687	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs7572278-A	0.210394	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
650	chr2	8563028	8563029	rs7572278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p25.1	NR	rs7572278-A	0.206818	1E-17		0.020437	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
650	chr2	8563028	8563029	rs7572278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p25.1		rs7572278-?	NR	7E-11				NR [~ 8900000] (imputed)	N
650	chr2	8597122	8597123	rs62106670	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p25.1	AC011747.3	rs62106670-T	0.38	7E-9		1.05	[1.04-1.07]	Illumina [20370935] (imputed)	N
650	chr2	8598443	8598444	rs11686272	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p25.1	NR	rs11686272-T	NR	7E-9		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
651	chr2	8653035	8653036	rs113142991	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Opioid dependence (time to event)	1,307 African American cases, 974 African American controls	144 African American cases, 354 African American controls	2p25.1	LINC00299, LINC0184	rs113142991-A	0.07	6E-7		1.57	[NR]	Illumina [NR] (imputed)	N
651	chr2	8660777	8660778	rs62106697	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.1	LINC00299, ID2	rs62106697-G	0.01	4E-8		0.7384	[0.48-1] unit increase	Illumina [~ 9000000] (imputed)	N
651	chr2	8660777	8660778	rs62106697	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p25.1	LINC00299, ID2	rs62106697-G	0.01	1E-7	(EA)	0.7245	[0.46-0.99] unit increase	Illumina [~ 9000000] (imputed)	N
651	chr2	8666237	8666238	rs1032841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p25.1		rs1032841-?	NR	8E-9				NR [~ 8900000] (imputed)	N
651	chr2	8705870	8705871	rs10929535	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	2p25.1		rs10929535-?	NR	8E-6		2.658		Illumina [5932083] (imputed)	N
651	chr2	8709348	8709349	rs7572890	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	2p25.1		rs7572890-?	NR	8E-6		2.639		Illumina [5932083] (imputed)	N
651	chr2	8712975	8712976	rs4669291	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	2p25.1		rs4669291-?	NR	5E-6		2.758		Illumina [5932083] (imputed)	N
651	chr2	8714423	8714424	rs12999015	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	2p25.1		rs12999015-?	NR	6E-6		2.778		Illumina [5932083] (imputed)	N
651	chr2	8720649	8720650	rs72784625	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	2p25.1	NR	rs72784625-T	0.7389	6E-9		0.0125258	[0.0083-0.0167] unit increase	Affymetrix [15000001]	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	5E-9	(-108 ms)	0.0456069	[0.031-0.061] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	5E-9	(-104 ms)	0.0451042	[0.03-0.06] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	5E-8	(-114 ms)	0.0431283	[0.028-0.058] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	3E-9	(-106 ms)	0.0458035	[0.031-0.061] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	2E-8	(-112 ms)	0.0444275	[0.03-0.059] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	1E-9	(-98 ms)	0.0472588	[0.032-0.062] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	1E-9	(-100 ms)	0.0466889	[0.032-0.062] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8729524	8729525	rs10193517	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs10193517-G	0.840421	1E-8	(-110 ms)	0.0449005	[0.03-0.06] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8735868	8735869	rs62105478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2p25.1		rs62105478-A	0.051924	2E-9		0.030124774	[0.02-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8735868	8735869	rs62105478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2p25.1		rs62105478-A	0.051925	1E-9		0.030689314	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8735868	8735869	rs62105478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2p25.1	NR	rs62105478-A	0.051684	1E-11		0.031667	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
651	chr2	8738902	8738903	rs4669297	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p25.1	NR	rs4669297-T	NR	5E-6		1.17	[NR]	Illumina [7158791] (imputed)	N
651	chr2	8740721	8740722	rs10929547	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	2p25.1	ID2	rs10929547-A	NR	9E-6	(Asian)	0.0027	[0.0015-0.0039] unit decrease	NR [2500000] (imputed)	N
651	chr2	8740721	8740722	rs10929547	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	2p25.1	ID2	rs10929547-A	NR	1E-11		0.002	[0.0014-0.0026] unit decrease	NR [2500000] (imputed)	N
651	chr2	8743367	8743368	rs13384855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p25.1		rs13384855-C	NR	1E-24		0.021	[0.017-0.025] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
651	chr2	8746661	8746661	rs200851194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2p25.1	NR	rs200851194-D	0.401247	8E-20		0.020472	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
651	chr2	8749400	8749405	rs78943124	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p25.1	AC011747.6	rs78943124-C	0.386	8E-14		0.027213	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8750265	8750266	rs3856447	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	2p25.1	ID2	rs3856447-A	0.39	1E-26		1.2	[0.98-1.42] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
651	chr2	8751462	8751463	rs1368928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p25.1	NR	rs1368928-G	0.639574	1E-24		0.019638	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
651	chr2	8752237	8752238	rs4668585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p25.1		rs4668585-?	NR	4E-20				NR [~ 8900000] (imputed)	N
651	chr2	8752947	8752948	rs12692365	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p25.1	AC011747.6	rs12692365-T	0.642663	9E-11		0.014950058	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8754205	8754206	rs4669306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p25.1	AC011747.6	rs4669306-A	0.63777	6E-19		0.02036207	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8754205	8754206	rs4669306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p25.1	AC011747.6	rs4669306-A	0.6376	5E-10		0.02294696	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8754205	8754206	rs4669306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p25.1	AC011747.6	rs4669306-A	0.6375	7E-12		0.0252116	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p25.1		rs6730558-T	NR	6E-56		0.0323	[0.028-0.036] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
651	chr2	8756182	8756183	rs6730558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2p25.1		rs6730558-T	0.614969	4E-17		0.031485	[0.024-0.039] unit decrease	Illumina [13476266] (imputed)	N
651	chr2	8756182	8756183	rs6730558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2p25.1		rs6730558-T	NR	1E-12		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
651	chr2	8756182	8756183	rs6730558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2p25.1		rs6730558-T	0.614804	5E-10		0.0235634	[0.016-0.031] unit decrease	Illumina [13476299] (imputed)	N
651	chr2	8756182	8756183	rs6730558	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p25.1		rs6730558-C	0.62	1E-45		0.16	[0.14-0.18] % increase	Affymetrix [NR] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	9E-22	(-96 ms)	0.054698	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	9E-22	(-110 ms)	0.0550108	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	9E-17	(-92 ms)	0.047878	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	9E-14	(-118 ms)	0.043161	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	9E-11	(-160 ms)	0.0368311	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	8E-9	(-124 ms)	0.0336668	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	6E-23	(-98 ms)	0.0555486	[0.044-0.067] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	6E-12	(-166 ms)	0.0387209	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	6E-10	(-156 ms)	0.0350312	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	5E-22	(-100 ms)	0.0552016	[0.044-0.067] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	5E-14	(-172 ms)	0.0425628	[0.031-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	5E-13	(-170 ms)	0.0408501	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	5E-11	(-162 ms)	0.0373423	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	5E-10	(-122 ms)	0.0362935	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	4E-19	(-114 ms)	0.0509601	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	3E-21	(-108 ms)	0.0542022	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	3E-21	(-104 ms)	0.0543234	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	3E-12	(-168 ms)	0.0394671	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-8	(-154 ms)	0.0327611	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-21	(-112 ms)	0.0541869	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-19	(-94 ms)	0.0520685	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-16	(-116 ms)	0.0471866	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-11	(-120 ms)	0.0390098	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	2E-10	(-158 ms)	0.0361413	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	1E-21	(-106 ms)	0.0545531	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	ID2	rs6730558-C	0.608021	1E-11	(-164 ms)	0.0384035	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380388	3E-171		0.063853055	[0.059-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380417	9E-148		0.0595451	[0.055-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380483	7E-274		0.08186413	[0.077-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380346	2E-68		0.0387222	[0.035-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380369	3E-22		0.0216315	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.380337	1E-29		0.025729647	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs6730558-C	0.612379	3E-221				Affymetrix, Illumina [22063850] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p25.1	NR	rs6730558-C	0.619767	1E-221		0.061613	[0.058-0.065] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs6730558-T	0.433744	8E-28				Affymetrix, Illumina [24332387] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs6730558-T	0.426878	6E-91				Affymetrix, Illumina [24246363] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p25.1	NR	rs6730558-T	0.379943	5E-78		0.034992	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	2p25.1	NR	rs6730558-C	0.384663	3E-13		0.03137	[0.023-0.04] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs6730558-T	0.430266	6E-41				Affymetrix, Illumina [20825802] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p25.1	NR	rs6730558-T	0.37997	2E-36		0.02498	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	2p25.1	ID2	rs6730558-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p25.1	ID2	rs6730558-T	0.4855	3E-7	(Hispanic/Latino)	1.3545	[0.84-1.87] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
651	chr2	8756182	8756183	rs6730558	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p25.1	ID2	rs6730558-T	0.3904	6E-68		1.1434	[1.01-1.27] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
651	chr2	8756182	8756183	rs6730558	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p25.1	ID2	rs6730558-?	NR	7E-8	(Hispanic/Latino)	1.357918	[0.87-1.85] unit increase	Illumina [26703325] (imputed)	N
651	chr2	8756182	8756183	rs6730558	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p25.1	ID2	rs6730558-?	NR	1E-10		1.484014	[1.03-1.94] unit increase	Illumina [26703325] (imputed)	N
651	chr2	8756182	8756183	rs6730558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p25.1		rs6730558-?	NR	1E-171				NR [~ 8900000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p25.1		rs6730558-?	NR	2E-31				NR [~ 8900000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2p25.1	LOC101929567, ID2-AS1	rs6730558-?	NR	2E-11		0.02963	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
651	chr2	8756182	8756183	rs6730558	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	2p25.1	ID2	rs6730558-T	0.49	3E-8	(Hispanic)	1.36	[0.87-1.85] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
651	chr2	8756182	8756183	rs6730558	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p25.1	NR	rs6730558-T	NR	4E-43		0.0561879	[0.048-0.064] unit decrease	Affymetrix [16832071] (imputed)	N
651	chr2	8756182	8756183	rs6730558	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.3806	5E-59		0.05913243	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8756182	8756183	rs6730558	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p25.1	AC011747.6	rs6730558-T	0.3805	9E-20		0.03308646	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8757325	8757326	rs62105489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p25.1	AC011747.6	rs62105489-T	0.053084	4E-10		0.030939987	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8757325	8757326	rs62105489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p25.1	AC011747.6	rs62105489-T	0.053082	1E-11		0.033454627	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
651	chr2	8757325	8757326	rs62105489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p25.1		rs62105489-?	NR	1E-12				NR [~ 8900000] (imputed)	N
651	chr2	8762413	8762414	rs3896594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p25.1		rs3896594-G	NR	4E-17		0.0149	[0.011-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
651	chr2	8762413	8762414	rs3896594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.382271	6E-179		0.06594112	[0.061-0.07] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8762413	8762414	rs3896594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.382278	9E-195		0.06883821	[0.064-0.073] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8762413	8762414	rs3896594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.382261	6E-56		0.036488716	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8762413	8762414	rs3896594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.38229	1E-175		0.06497116	[0.06-0.069] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8762413	8762414	rs3896594	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.382285	2E-191		0.0679063	[0.063-0.072] unit increase	Affymetrix [93095623] (imputed)	N
651	chr2	8762413	8762414	rs3896594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.3813	2E-73		0.06766386	[0.06-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8762413	8762414	rs3896594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.3813	3E-81		0.07128008	[0.064-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8762413	8762414	rs3896594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.3813	3E-55		0.05838105	[0.051-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8762413	8762414	rs3896594	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p25.1	AC011747.6	rs3896594-G	0.3813	4E-61		0.06151416	[0.054-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
651	chr2	8764873	8764874	rs4493233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs4493233-T	0.519336	7E-19				Affymetrix, Illumina [21126107] (imputed)	N
651	chr2	8776101	8776102	rs3927971	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	2p25.1	NR	rs3927971-?	NR	8E-6		1.2987013		Affymetrix [8183964] (imputed)	N
652	chr2	8868516	8868517	rs74885319	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2p25.1	NR	rs74885319-?		2E-6	(EA)			Illumina [~ 5190000] (imputed)	N
652	chr2	8877041	8877042	rs61742863	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2p25.1	NR	rs61742863-?		2E-6	(EA)			Illumina [~ 5190000] (imputed)	N
652	chr2	8879554	8879555	rs72786317	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2p25.1	NR	rs72786317-?		2E-6	(EA)			Illumina [~ 5190000] (imputed)	N
652	chr2	8888085	8888086	rs199913532	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	2p25.1	KIDINS220	rs199913532-A	0.0039	6E-6		0.519	[0.29-0.74] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
652	chr2	8905820	8905821	rs138129528	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KIDINS220	rs138129528-?	NR	3E-8	(female)	4.04176	[NR] unit decrease	Affymetrix [NR] (imputed)	N
653	chr2	8949069	8949070	rs7587928	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2p25.1	KIDINS220	rs7587928-?	NR	2E-7				Illumina [874956]	N
653	chr2	8977813	8977814	rs191497052	31522824	Liu Y	2019-09-06	J Dermatol Sci	Genome-wide scan identified genetic variants associated with skin aging in a Chinese female population.	Skin aging measurement	1,084 Han Chinese ancestry women (>50 years old)	964 European ancestry women	2p25.1	KIDINS220	rs191497052-?	0.03	6E-9	(Dominant, teleangiectasis, East Asian)	0.6	NR unit increase	Illumina [6328611] (imputed)	N
653	chr2	8992379	8992380	rs6735118	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	2p25.1	MBOAT2, KIDINS220, HMGB1P25, ID2	rs6735118-?		7E-6		1.616554	[1.33-2.00]	Illumina [9389922] (imputed)	N
653	chr2	9007707	9007708	rs116769926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p25.1	NR	rs116769926-A	NR	4E-19		0.0758	[0.059-0.092] unit increase	Affymetrix [9000000] (imputed)	N
653	chr2	9037081	9037082	rs150954074	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p25.1	MBOAT2	rs150954074-C	0.9607201	8E-6		1.313554	[1.17-1.48]	Illumina [10439017] (imputed)	N
654	chr2	9154941	9154942	rs2048537	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	2p25.1	KIDINS220	rs2048537-T	0.55	3E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
655	chr2	9185563	9185564	rs62120041	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2p25.1	NR	rs62120041-T	NR	3E-7		1.38	unit increase	Affymetrix [14661600] (imputed)	N
655	chr2	9188513	9188514	rs79512144	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2p25.1		rs79512144-A	0.06477	4E-8		0.02738	[0.018-0.037] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
655	chr2	9245535	9245536	rs2666203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p25.1	NR	rs2666203-G	NR	4E-9		0.0197	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
655	chr2	9245903	9245904	rs11892611	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p25.1		rs11892611-A	NR	1E-9		0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
655	chr2	9246720	9246721	rs10177191	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p25.1	ASAP2	rs10177191-T	0.3995	3E-8		0.0179	[0.012-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
655	chr2	9246720	9246721	rs10177191	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p25.1	ASAP2	rs10177191-T	0.4188	9E-7		0.018939	[0.011-0.027] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
655	chr2	9250037	9250038	rs1109670	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	2p25.1	DDEF2	rs1109670-?	0.26	9E-6		1.38	[NR]	Illumina [551642]	N
655	chr2	9259597	9259598	rs9636252	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p25.1	NR	rs9636252-C	0.641289432131731	3E-6	(IGP8)	0.1514	[0.087-0.215] unit increase	Illumina [~ 2500000] (imputed)	N
655	chr2	9264774	9264775	rs78145785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p25.1	NR	rs78145785-T	NR	3E-14		0.0636	[0.047-0.08] unit increase	Affymetrix [9000000] (imputed)	N
655	chr2	9278694	9278695	rs7590864	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	2p25.1	NR	rs7590864-?	NR	3E-7			[NR]	Illumina [5432814] (imputed)	N
655	chr2	9290356	9290357	rs955277	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2p25.1	NR	rs955277-C	0.39	7E-9			[NR]	Affymetrix [9886854] (imputed)	N
655	chr2	9290356	9290357	rs955277	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2p25.1	NR	rs955277-C	0.39	4E-10		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
655	chr2	9290356	9290357	rs955277	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2p25.1	NR	rs955277-C	0.39	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
655	chr2	9290356	9290357	rs955277	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	2p25.1	NR	rs955277-C	0.39	4E-10		0.92	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
655	chr2	9290356	9290357	rs955277	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2p25.1	ASAP2	rs955277-T	0.61	2E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
655	chr2	9291233	9291234	rs73912949	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p25.1	intergenic	rs73912949-G	0.007	3E-6		6.97	[2.7-17.99]	Illumina [1556551]	N
655	chr2	9294580	9294581	rs11691805	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p25.1		rs11691805-?	NR	7E-30				NR [~ 8900000] (imputed)	N
655	chr2	9297589	9297590	rs968267	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p25.1	ASAP2	rs968267-G	0.6093	7E-10		0.1733	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
655	chr2	9300091	9300092	rs7586597	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p25.1	MBOAT2, ASAP2	rs7586597-G		3E-6		0.175	unit decrease	Affymetrix [at least 2696785] (imputed)	N
655	chr2	9300091	9300092	rs7586597	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p25.1	MBOAT2, ASAP2	rs7586597-G		7E-9		0.154	unit decrease	Affymetrix [at least 2696785] (imputed)	N
656	chr2	9328012	9328013	rs34681162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p25.1		rs34681162-C	NR	4E-8		0.0134	[0.0085-0.0183] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
656	chr2	9402987	9402988	rs2666218	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p25.1	ASAP2	rs2666218-?	NR	9E-10	(subset analysis)			Illumina [130052]	N
656	chr2	9410628	9410629	rs907162	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p25.1	ASAP2	rs907162-C	0.401	8E-7		1.0597149		NR [9372253] (imputed)	N
656	chr2	9420131	9420132	rs7567672	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2p25.1		rs7567672-G	NR	9E-6		0.3226	unit increase	Illumina [8524982] (imputed)	N
656	chr2	9423677	9423678	rs34057310	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	2p25.1	ASAP2	rs34057310-T	0.219	3E-7		0.0624	[0.038-0.086] unit increase	NR [4841651] (imputed)	N
657	chr2	9534428	9534429	rs140369800	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	2p25.1	NR	rs140369800-G	NR	1E-5		1.7569	NR	Illumina [at least 560000] (imputed)	N
658	chr2	9619776	9619777	rs4511696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs4511696-?	NR	1E-19				NR [~ 8900000] (imputed)	N
658	chr2	9620700	9620701	rs13032333	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2p25.1	NR	rs13032333-A	0.3	4E-10		0.022	[0.014-0.03] z score increase	Affymetrix [up to 10400000] (imputed)	N
658	chr2	9630015	9630016	rs1130094	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	2p25.1		rs1130094-T	0.51	8E-13		0.0576	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
658	chr2	9645631	9645632	rs55794209	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p25.1	NR	rs55794209-A	0.066	3E-6		0.227	[0.13-0.32] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
658	chr2	9662209	9662210	rs10495563	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2p25.1	ADAM17	rs10495563-A	0.664247	2E-16		0.022148	[0.017-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
658	chr2	9676412	9676413	rs17362650	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	2p25.1	NR	rs17362650-C	0.26	8E-6		1.33	[1.21-1.45]	Illumina [4058415] (imputed)	N
658	chr2	9695281	9695282	rs11893688	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2p25.1	ADAM17	rs11893688-T	0.66603	1E-9		0.019572	[0.013-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
658	chr2	9695281	9695282	rs11893688	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p25.1	NR	rs11893688-T	0.67	6E-12		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
658	chr2	9695281	9695282	rs11893688	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p25.1	NR	rs11893688-T	0.67	5E-8				Affymetrix [2446094] (imputed)	N
658	chr2	9697066	9697067	rs12474969	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p25.1	ADAM17	rs12474969-A	0.3006	4E-16		0.0167	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
658	chr2	9698189	9698190	rs12692387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p25.1		rs12692387-?	NR	4E-10				NR [~ 8900000] (imputed)	N
658	chr2	9698189	9698190	rs12692387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p25.1	NA	rs12692387-T	0.3315	3E-9		0.0124	[0.0083-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
659	chr2	9721895	9721896	rs6432018	22174390	Rankinen T	2011-12-15	J Appl Physiol (1985)	Heritability of submaximal exercise heart rate response to exercise training is accounted for by nine SNPs.	Heart rate variability traits	472 European ancestry individuals from 99 families	NA	2p25.1	YWHAQ	rs6432018-?	NR	8E-7				Illumina [320000]	N
659	chr2	9741534	9741535	rs55883249	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p25.1	NR	rs55883249-?	NR	2E-7	(Japanese)	0.6204	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
659	chr2	9777228	9777229	rs4668626	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p25.1	AC082651.1	rs4668626-A	0.5839	2E-10		0.0113	[0.0078-0.0148] unit decrease	Affymetrix [18391927] (imputed)	N
659	chr2	9780743	9780744	rs1534043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p25.1		rs1534043-T	NR	3E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
659	chr2	9798876	9798877	rs72777070	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2p25.1	NR	rs72777070-G		9E-8		0.1069	[0.068-0.146] SD units increase	NR [10700000] (imputed)	N
659	chr2	9805922	9805923	rs4669413	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2p25.1	RP11-521D12.1	rs4669413-T	NR	1E-8	(Blautia genus)	0.18	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
659	chr2	9823869	9823870	rs4669418	25353672	Fernandez-Navarro P	2014-10-29	Int J Cancer	Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21.	Mammographic density	239 European ancestry low mammographic density females, 239 European ancestry high mammographic density females	NA	2p25.1	NR	rs4669418-A	0.597	9E-6		1.86	[1.41-2.47]	Illumina [575374]	N
659	chr2	9825973	9825974	rs3856464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs3856464-?	NR	3E-9				NR [~ 8900000] (imputed)	N
660	chr2	9849396	9849397	rs7602784	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	2p25.1	Intergenic	rs7602784-A	0.28	2E-6	(recessive)	0.19	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
660	chr2	9907889	9907890	rs62127536	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC082651.3	rs62127536-?	NR	5E-9	(female)	1.74513	[NR] unit increase	Affymetrix [NR] (imputed)	N
660	chr2	9924386	9924387	rs2357266	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2p25.1	intergenic	rs2357266-G	0.35	4E-6		0.02	[NR] unit decrease	Illumina [2380486] (imputed)	N
660	chr2	9928152	9928153	rs113378111	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to selective serotonin reuptake inhibitors and depression	3,340 European ancestry non-responder cases, 191,882  European ancestry healthy controls	NA	2p25.1	YWHAQ, TAF1B	rs113378111-?		7E-7		1.579	[1.303-1.912]	Illumina [~ 12000000] (imputed)	N
661	chr2	9972441	9972442	rs287982	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	2p25.1	TAF1B	rs287982-A	0.73	6E-9		1.2195122	[NR]	Illumina [803202]	N
661	chr2	10059096	10059097	rs2303921	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (maternal genetic effects)	201 European ancestry complete and incomplete trios	NA	2p25.1	TAF1B	rs2303921-?	NR	3E-6				Illumina [NR]	N
662	chr2	10094525	10094526	rs73913932	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p25.1	NR	rs73913932-G	NR	6E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
662	chr2	10094525	10094526	rs73913932	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2p25.1	GRHL1	rs73913932-?		4E-8				Illumina [5041948] (imputed)	N
662	chr2	10097093	10097094	rs16867253	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p25.1	NR	rs16867253-?	NR	3E-6				Affymetrix [NR]	N
662	chr2	10097093	10097094	rs16867253	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	2p25.1	NR	rs16867253-?	NR	6E-7				Affymetrix [NR]	N
662	chr2	10117867	10117868	rs11902236	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p25.1	NR	rs11902236-T	0.27	5E-7		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
662	chr2	10117867	10117868	rs11902236	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	2p25.1	C2orf48, CYS1, GRHL1, KLF11, MIR4261, RRM2, TAF1B	rs11902236-A	0.27	3E-8		1.07	[1.03-1.10]	Illumina [~ 2600000] (imputed)	N
662	chr2	10118423	10118424	rs3791760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p25.1		rs3791760-C	NR	2E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
662	chr2	10118423	10118424	rs3791760	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2p25.1	GRHL1	rs3791760-T	0.7192	1E-10		0.005	[0.0034-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
662	chr2	10135680	10135681	rs113577745	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2p25.1		rs113577745-C	NR	5E-10		0.94	[0.92-0.96]	Affymetrix, Illumina [NR] (imputed)	N
662	chr2	10135680	10135681	rs113577745	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p25.1	GRHL1	rs113577745-G	0.1	4E-10	(EA)	1.08	[1.05-1.11] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
662	chr2	10148799	10148800	rs57909992	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p25.1	NR	rs57909992-C	NR	9E-11		0.0233	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
662	chr2	10160001	10160002	rs6713406	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p25.1	NR	rs6713406-?	NR	3E-8				Illumina [7760689] (imputed)	N
662	chr2	10178235	10178236	rs4396680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p25.1		rs4396680-?	NR	5E-9				NR [~ 8900000] (imputed)	N
662	chr2	10178235	10178236	rs4396680	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p25.1	NR	rs4396680-A	NR	4E-10		6.256	z score increase	Affymetrix [10847151] (imputed)	N
662	chr2	10178235	10178236	rs4396680	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p25.1	KLF11	rs4396680-A	0.203099	4E-9		5.88	z score increase	NR [10847151] (imputed)	N
662	chr2	10178235	10178236	rs4396680	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	2p25.1	KLF11	rs4396680-A	0.203099	1E-8		5.663	unit increase	NR [10847151] (imputed)	N
662	chr2	10178478	10178479	rs3885668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p25.1	KLF11	rs3885668-T	0.563076	3E-10		0.0141355805	[0.0097-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
662	chr2	10182818	10182818	rs70948864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p25.1		rs70948864-AG	NR	9E-9		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
662	chr2	10182819	10182819	rs386354820	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p25.1	KLF11	rs386354820-A	0.4429	2E-6		0.0324	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
662	chr2	10184286	10184287	rs62127532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs62127532-C	0.621941	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
662	chr2	10184286	10184287	rs62127532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p25.1	NR	rs62127532-C	0.561643	5E-12		0.013343	[0.0096-0.0171] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
662	chr2	10189834	10189835	rs6432053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p25.1		rs6432053-T	NR	2E-9		0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
662	chr2	10190711	10190712	rs6432054	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p25.1	WLS	rs6432054-?		4E-8				NR [7428630] (imputed)	N
662	chr2	10190711	10190712	rs6432054	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p25.1	NR	rs6432054-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
662	chr2	10194191	10194192	rs4669522	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p25.1	KLF11	rs4669522-T	0.204377	8E-14		0.0169153	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
662	chr2	10194191	10194192	rs4669522	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p25.1		rs4669522-?	NR	2E-14		0.0180462	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
662	chr2	10197269	10197270	rs15380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p25.1		rs15380-?	NR	7E-13				NR [~ 8900000] (imputed)	N
662	chr2	10198112	10198113	rs6717452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p25.1		rs6717452-A	NR	3E-31		0.0166	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
662	chr2	10199600	10199601	rs10165255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p25.1		rs10165255-?	NR	1E-9				NR [~ 8900000] (imputed)	N
662	chr2	10199600	10199601	rs10165255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs10165255-?	NR	1E-45				NR [~ 8900000] (imputed)	N
662	chr2	10200315	10200316	rs12692398	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	2p25.1	CYS1	rs12692398-A	0.2	3E-8	(EA, COPDGene + GenKOLS)	1.44	[1.26-1.64]	Illumina [NR] (imputed)	N
664	chr2	10380208	10380209	rs759341	25493955	Gorski M	2014-12-10	Kidney Int	Genome-wide association study of kidney function decline in individuals of European descent.	Kidney function decline traits	up to 45,530 European ancestry individuals	up to 18,028 European ancestry individuals	2p25.1	C2orf48, HPCAL1, RRM2	rs759341-A	0.31	3E-6	(CKDi25)	0.16	[NR] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
664	chr2	10393227	10393228	rs6743761	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	2p25.1	NR	rs6743761-A	0.482	3E-6		0.09	[0.051-0.129] unit increase	Illumina [~ 8400000] (imputed)	N
664	chr2	10397351	10397352	rs56277911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p25.1		rs56277911-?	NR	8E-9				NR [~ 8900000] (imputed)	N
664	chr2	10401927	10401928	rs115866594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs115866594-?	NR	2E-13				NR [~ 8900000] (imputed)	N
664	chr2	10418805	10418806	rs139215025	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2p25.1	C2orf48, HPCAL1	rs139215025-A	0.01	9E-11	(African)	0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
664	chr2	10468295	10468296	rs1003652	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	2p25.1	TAF1B, GRHL1, KLF11, PDIA6	rs1003652-?		5E-6		11.67	[6.83-16.51] unit decrease	Illumina [~ 4900000] (imputed)	N
664	chr2	10468295	10468296	rs1003652	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	2p25.1	TAF1B, GRHL1, KLF11, PDIA6	rs1003652-?		4E-6		3.563	[2.12-5] unit decrease	Illumina [~ 4900000] (imputed)	N
664	chr2	10475307	10475308	rs4669572	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2p25.1	NR	rs4669572-?	NR	7E-6	(AA)	5.47	[4.55-6.39]	Illumina [905956]	N
664	chr2	10480636	10480637	rs6758955	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls		HPCAL1	rs6758955-?	NR	8E-6		0.142	[0.071-0.213] unit increase	Illumina [at least 13000000] (imputed)	N
665	chr2	10486316	10486317	rs13031382	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	2p25.1	NR	rs13031382-?	NR	5E-6		0.0231	[0.013-0.033] unit decrease	Illumina [~ 7800000] (imputed)	N
665	chr2	10489581	10489582	rs6729667	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		HPCAL1	rs6729667-G	0.21	1E-7				Illumina [1679420] (imputed)	N
665	chr2	10498478	10498479	rs116430522	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HPCAL1	rs116430522-?	NR	6E-10	(male)	2.08117	[NR] unit decrease	Affymetrix [NR] (imputed)	N
665	chr2	10510147	10510148	rs575837367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p25.1		rs575837367-A	NR	7E-29		0.311	[0.26-0.37] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
665	chr2	10523663	10523664	rs139539100	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HPCAL1	rs139539100-?	NR	1E-13		2.24349	[NR] unit decrease	Affymetrix [NR] (imputed)	N
665	chr2	10537122	10537123	rs2270303	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	2p25.1	NR	rs2270303-G		3E-6		0.1122	[0.065-0.159] SD units increase	NR [10700000] (imputed)	N
665	chr2	10559312	10559312	rs79661622	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	2p25.1		rs79661622-?	NR	4E-7		0.27	[0.14-0.51]	Affymetrix, Illumina [29826485] (imputed)	N
665	chr2	10565577	10565578	rs11686949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p25.1	HPCAL1	rs11686949-A	0.185846	6E-9		0.016789898	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
666	chr2	10636216	10636217	rs114800501	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	2p25.1		rs114800501-?	NR	2E-6		0.15	[0.089-0.211] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
666	chr2	10673315	10673316	rs56047999	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	2p25.1	NOL10	rs56047999-C	0.876	5E-6		0.028	[0.016-0.04] unit increase	Affymetrix [~ 10446505] (imputed)	N
666	chr2	10710729	10710730	rs9287719	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p25.1	NR	rs9287719-C	0.47	6E-17		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
666	chr2	10710729	10710730	rs9287719	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	2p25.1	NOL10	rs9287719-C	0.46	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
666	chr2	10710729	10710730	rs9287719	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	2p25.1	NOL10	rs9287719-C	0.46	2E-8	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
667	chr2	10781974	10781975	rs1990613	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p25.1	NR	rs1990613-T	NR	5E-19		1.061	[1.05-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
667	chr2	10807747	10807748	rs1012580	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	2p25.1	NOL10	rs1012580-A	0.2869	7E-7		0.4247	[0.27-0.58] unit decrease	Illumina [533687]	N
668	chr2	10903411	10903412	rs1198872	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	2p25.1	ATP6V1C2	rs1198872-T	NR	2E-6	(Dichotomous variable)	2.04	[1.51-2.74]	Affymetrix, Illumina [~ 2500000] (imputed)	N
668	chr2	10915751	10915752	rs6752558	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p25.1	PDIA6	rs6752558-A	0.69265625	3E-6	(PDIA6, 5650_9_3)	0.119280875	[0.069-0.169] unit decrease	Illumina [> 1000000] (imputed)	N
668	chr2	10952647	10952648	rs116156133	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p25.1	NR	rs116156133-?	NR	8E-6		4.469	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
668	chr2	10957847	10957848	rs12474895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p25.1		rs12474895-?	NR	3E-9				NR [~ 8900000] (imputed)	N
668	chr2	10961473	10961474	rs7590368	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p25.1		rs7590368-T	0.7335	4E-20		0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
668	chr2	10961473	10961474	rs7590368	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p25.1	NR	rs7590368-T	0.7313	3E-8		0.013930134	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
668	chr2	10973200	10973201	rs11885932	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p25.1	Intergenic	rs11885932-A	0.9153	1E-8		0.0231	[0.015-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
668	chr2	10976826	10976827	rs4669634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p25.1	Intergenic	rs4669634-A	0.6889	6E-16	(MTAG)	0.0157	[0.012-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
668	chr2	10976826	10976827	rs4669634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p25.1	Intergenic	rs4669634-A	0.6889	2E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
668	chr2	10976826	10976827	rs4669634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p25.1	Intergenic	rs4669634-A	0.686	2E-15	(MTAG)	0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
668	chr2	10977584	10977585	rs76076331	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p25.1	PDIA6	rs76076331-?	NR	2E-8		0.01779352	[0.012-0.024] unit increase	NR [7306098]	N
668	chr2	10977584	10977585	rs76076331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p25.1	Intergenic	rs76076331-T	0.1282	2E-20	(MTAG)	0.0228	[0.018-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
668	chr2	10977584	10977585	rs76076331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p25.1		rs76076331-T	0.1346	2E-23		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
668	chr2	10977584	10977585	rs76076331	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p25.1	Intergenic	rs76076331-T	0.1346	1E-25	(MTAG)	0.0201	[0.016-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
668	chr2	10977584	10977585	rs76076331	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p25.1	NR	rs76076331-T	0.1398	2E-10		0.02040167	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
668	chr2	10977584	10977585	rs76076331	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	2p25.1	NR	rs76076331-T	0.1467	4E-8		1.0468786	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
668	chr2	10978709	10978710	rs1734370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p25.1		rs1734370-A	0.7171	2E-10		0.0099	[0.0068-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
668	chr2	10984513	10984514	rs77966298	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p25.1	NA	rs77966298-G		2E-8		0.0147767	[0.0096-0.0199] unit decrease	Illumina [13288253] (imputed)	N
668	chr2	10984513	10984514	rs77966298	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p25.1	AC092687.4	rs77966298-G	0.1325	3E-10		0.018734999	[0.013-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
669	chr2	11026245	11026259	rs569778919	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Ease of getting up in the morning	112,866 European ancestry individuals	NA	2p25.1	NR	rs569778919-C	0.28	4E-8		0.027	[0.018-0.036] unit increase	Affymetrix [at least 12428592] (imputed)	N
669	chr2	11027214	11027215	rs11683220	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2p25.1		rs11683220-G	0.679339462	1E-5		0.012144629	[0.0068-0.0175] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
669	chr2	11040145	11040146	rs13396519	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	2p25.1	NR	rs13396519-?	NR	4E-6		8.753	[5.2-12.3] unit decrease	Illumina [498648]	N
669	chr2	11106912	11106913	rs13009756	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p25.1	Intergenic	rs13009756-G	0.932	4E-6	(AA)	0.094	NR unit increase	Illumina [NR] (imputed)	N
670	chr2	11220561	11220562	rs6739054	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	2p25.1	AC062028.1	rs6739054-?	NR	2E-6	(PC1)			Illumina [up to 563855]	N
670	chr2	11226775	11226776	rs6432169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p25.1	Intergenic	rs6432169-A	0.5671	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
670	chr2	11255339	11255340	rs12692432	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p25.1	C2orf50, AX746649, FLJ33534	rs12692432-C		6E-6		0.2855	unit increase	Illumina [5767231] (imputed)	N
670	chr2	11257504	11257505	rs16857178	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	FLJ33534	rs16857178-A	0.043	9E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
670	chr2	11270149	11270150	rs140133294	26278006	Ahmad S	2015-08-17	Int J Obes (Lond)	A novel interaction between the FLJ33534 locus and smoking in obesity: a genome-wide study of 14 131 Pakistani adults.	Body mass index variance	14,131 Pakistani ancestry individuals	NA	2p25.1	FLJ33534	rs140133294-?	NR	3E-8				Illumina [NR] (imputed)	N
671	chr2	11297594	11297595	rs4668715	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p25.1	PQLC3	rs4668715-T	0.457506107390849	4E-7	(F_Veillonellaceae_HB)	0.275456	[0.17-0.38] unit decrease	Illumina [7711310] (imputed)	N
671	chr2	11306977	11306978	rs3951242	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	2p25.1		rs3951242-A	0.4697	3E-8		0.0461	[0.03-0.062] unit decrease	Affymetrix, Illumina [8662096] (imputed)	N
671	chr2	11308639	11308640	rs35563401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p25.1	PQLC3	rs35563401-T	0.502946	2E-15		0.017871995	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
671	chr2	11308841	11308842	rs62120155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p25.1	PQLC3	rs62120155-G	NR	3E-9		0.0168429	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
671	chr2	11308841	11308842	rs62120155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p25.1	PQLC3	rs62120155-G	NR	4E-10		0.017799	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
671	chr2	11308841	11308842	rs62120155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p25.1	NR	rs62120155-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
671	chr2	11308841	11308842	rs62120155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p25.1		rs62120155-?	NR	1E-8				NR [~ 8900000] (imputed)	N
671	chr2	11312180	11312181	rs12987956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p25.1	NR	rs12987956-A	0.501849	4E-11		0.012028	[0.0085-0.0156] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
671	chr2	11312223	11312224	rs3732103	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	2p25.1		rs3732103-C	0.47	2E-6		0.87	[0.82-0.92]	Illumina [7199488] (imputed)	N
671	chr2	11326754	11326755	rs6753921	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p25.1	NR	rs6753921-A	0.4878	8E-9				NR [9056863] (imputed)	N
671	chr2	11344503	11344504	rs17366643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs17366643-C	0.511381	1E-13				Affymetrix, Illumina [23472807] (imputed)	N
671	chr2	11344503	11344504	rs17366643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p25.1	NR	rs17366643-C	0.537795	1E-14		0.014557	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
671	chr2	11350387	11350388	rs143293600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p25.1	ROCK2	rs143293600-A	0.537591	6E-18		0.019331105	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
672	chr2	11428802	11428803	rs35012806	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p25.1	ROCK2	rs35012806-C	0.510684	9E-13		0.015926495	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
672	chr2	11485064	11485067	rs147785212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p25.1		rs147785212-C	NR	6E-13		0.0093	[0.0068-0.0118] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
672	chr2	11485138	11485139	rs56309145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p25.1	NR	rs56309145-C	0.467649	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
672	chr2	11485230	11485231	rs56211149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs56211149-?	NR	2E-13				NR [~ 8900000] (imputed)	N
672	chr2	11499031	11499032	rs6432188	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	2p25.1	Intergenic	rs6432188-T	0.18	4E-6	(additive)	0.09	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
672	chr2	11503080	11503081	rs10189756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p25.1		rs10189756-C	NR	1E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
672	chr2	11510947	11510948	rs6716724	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2p25.1	E2F6	rs6716724-?	0.18	6E-7	(Recessive)	1.39	[1.22-1.57]	Affymetrix [319222]	N
672	chr2	11512824	11512825	rs72774870	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p25.1	ROCK2	rs72774870-C	0.927109	4E-8		0.0220666	[0.014-0.03] unit increase	Affymetrix [NR] (imputed)	N
672	chr2	11526715	11526716	rs12466910	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p25.1	AC099344.3	rs12466910-G	NR	1E-7		1.05	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
672	chr2	11526715	11526716	rs12466910	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p25.1	AC099344.3	rs12466910-G	0.561611	3E-8		1.0526316	[1.03-1.06]	Affymetrix, Illumina [up to 9061544] (imputed)	N
672	chr2	11527392	11527393	rs62118909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p25.1		rs62118909-C	NR	3E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
672	chr2	11529509	11529510	rs11683268	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p25.1		rs11683268-A	0.37	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
672	chr2	11529509	11529510	rs11683268	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p25.1		rs11683268-A	0.37	3E-13		7.32	z score increase	Affymetrix [9061022] (imputed)	N
672	chr2	11529509	11529510	rs11683268	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p25.1	NR	rs11683268-A	0.3769	1E-11				NR [9056863] (imputed)	N
672	chr2	11529509	11529510	rs11683268	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p25.1	NR	rs11683268-?		3E-11				NR [7428630] (imputed)	N
673	chr2	11586218	11586219	rs1047392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	E2F6	rs1047392-A	0.656193	9E-11	(-24 ms)	0.0378986	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
673	chr2	11586218	11586219	rs1047392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	E2F6	rs1047392-A	0.656193	9E-10	(-22 ms)	0.0359698	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
673	chr2	11586218	11586219	rs1047392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p25.1	E2F6	rs1047392-A	0.656193	1E-9	(-26 ms)	0.0349034	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
673	chr2	11658971	11658972	rs7580473	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	2p25.1		rs7580473-T	NR	1E-9		0.1944	[0.13-0.26] unit increase	Affymetrix, Illumina [25734875] (imputed)	N
673	chr2	11660954	11660955	rs77294520	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p25.1	GREB1	rs77294520-C	0.147	1E-12	(EA)	1.16	1.11-1.21	Affymetrix, Illumina [up to 6979035] (imputed)	N
673	chr2	11660954	11660955	rs77294520	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p25.1	GREB1	rs77294520-C	0.147	1E-12		1.16	1.11-1.21	Affymetrix, Illumina [up to 6979035] (imputed)	N
673	chr2	11664750	11664751	rs148143917	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	2p25.1	GREB1	rs148143917-A	0.981	8E-10		1.3513513	[1.22-1.49]	Affymetrix, Illumina [43421991] (imputed)	N
674	chr2	11666338	11666339	rs12479436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2p25.1		rs12479436-G	NR	8E-22		0.0839	[0.067-0.101] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
674	chr2	11672342	11672343	rs16857586	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	High density lipoprotein cholesterol levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	2p25.1	GREB1	rs16857586-A	NR	2E-7	(recessive model)	5.173	z-score increase	Illumina [632375]	N
674	chr2	11680402	11680403	rs35417544	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	2p25.1	GREB1	rs35417544-T	0.69	2E-19		1.09	[1.07-1.10]	Affymetrix, Illumina [8662096] (imputed)	N
674	chr2	11680402	11680403	rs35417544	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	2p25.1		rs35417544-T	0.7058	2E-19		0.0812	[0.064-0.099] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
674	chr2	11684483	11684484	rs11692588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2p25.1		rs11692588-G	0.472971316	2E-18		0.12186873	[0.095-0.149] unit increase	Illumina [13401454] (imputed)	N
674	chr2	11691223	11691224	rs974163	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p25.1	GREB1	rs974163-?		6E-6				Illumina [4322238] (imputed)	N
674	chr2	11701842	11701843	rs113084984	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p25.1	NR	rs113084984-A	0.2192	5E-6	(EA)	0.0367	[0.021-0.052] unit decrease	Illumina [~ 11800000] (imputed)	N
674	chr2	11702660	11702661	rs10929757	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	2p25.1	GREB1	rs10929757-C	0.60029	7E-10		1.08	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
674	chr2	11702959	11702960	rs6432216	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p25.1	Intergenic	rs6432216-?		5E-7		1.1111112	[1.06-1.16]	Illumina [7645193] (imputed)	N
674	chr2	11702959	11702960	rs6432216	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p25.1	GREB1	rs6432216-?		5E-8	(uterine fibroid,endometriosis)			Illumina [7645193] (imputed)	N
674	chr2	11702959	11702960	rs6432216	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p25.1	Intergenic	rs6432216-?		2E-7		1.3888888	[1.22-1.56]	Illumina [7645193] (imputed)	N
674	chr2	11712074	11712075	rs13028479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2p25.1	NR	rs13028479-G	0.446695	3E-20		0.0184182	[0.014-0.022] unit increase	Affymetrix [16583148] (imputed)	N
674	chr2	11712074	11712075	rs13028479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2p25.1	NR	rs13028479-G	0.44649	3E-24		0.0308994	[0.025-0.037] unit increase	Affymetrix [16577424] (imputed)	N
674	chr2	11716918	11716919	rs4668732	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p25.1	NR	rs4668732-T	0.6366970000000001	3E-13		0.00573695	[0.004-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
674	chr2	11716918	11716919	rs4668732	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p25.1	NR	rs4668732-T	0.6366970000000001	4E-13		0.00622506	[0.0043-0.0081] unit increase	Affymetrix [16582965] (imputed)	N
674	chr2	11720298	11720299	rs113467400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p25.1		rs113467400-?	NR	1E-8				NR [~ 8900000] (imputed)	N
674	chr2	11720885	11720886	rs76718398	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2p25.1		rs76718398-A	NR	1E-5		1.1322	unit increase	Illumina [8524982] (imputed)	N
674	chr2	11721534	11721535	rs11674184	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p25.1	GREB1	rs11674184-T	0.61	3E-17		1.13	1.10-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
674	chr2	11721534	11721535	rs11674184	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p25.1	GREB1	rs11674184-T	0.61	3E-14	(EA)	1.12	1.09-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
674	chr2	11722081	11722082	rs10200851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ovarian cyst	10,847 European ancestry cases, 207,622 European ancestry controls, 2,896 East Asian ancestry cases, 79,865 East Asian ancestry controls	NA	2p25.1		rs10200851-T	NR	6E-10		0.0795	[0.054-0.105] unit decrease	Affymetrix, Illumina [25752875] (imputed)	N
674	chr2	11723735	11723736	rs6736604	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	2p25.1		rs6736604-?	NR	1E-6		0.21	[0.13-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
674	chr2	11725240	11725241	rs12470971	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p25.1	NR	rs12470971-A	0.33765199999999995	3E-8		0.0170308	[0.011-0.023] unit increase	Affymetrix [16577313] (imputed)	N
674	chr2	11727506	11727507	rs13394619	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	2p25.1	GREB1	rs13394619-G	0.521	6E-9		1.15	[1.09-1.20]	Illumina [407632]	N
674	chr2	11738090	11738091	rs1435547	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p25.1	GREB1, E2F6, NTSR2	rs1435547-A	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
674	chr2	11758430	11758431	rs73175262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	GREB1	rs73175262-A	0.053	9E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
674	chr2	11758430	11758431	rs73175262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p25.1	GREB1	rs73175262-A	0.053	7E-8	(MCP1 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
674	chr2	11781617	11781618	rs149940960	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2p25.1	GREB1	rs149940960-T		4E-6		6.25	[1.18-33.33]	Affymetrix, Illumina [NR] (imputed)	N
674	chr2	11781617	11781618	rs149940960	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2p25.1	GREB1	rs149940960-T		2E-8	(AA)	6.666666	[1.49-25]	Affymetrix, Illumina [NR] (imputed)	N
675	chr2	11854925	11854926	rs116773585	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.1	NR	rs116773585-T	0.0453	9E-9	(KRT2)	0.1649	NR unit increase	Illumina [1671387] (imputed)	N
675	chr2	11878494	11878495	rs11676369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p25.1	NR	rs11676369-G	NR	5E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
676	chr2	11977336	11977337	rs114706174	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p25.1	NR	rs114706174-G	0.01568	8E-11	(IGHM)	0.2724	NR unit increase	Illumina [1671387] (imputed)	N
676	chr2	12011212	12011213	rs11900351	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p25.1	NTSR2	rs11900351-?	NR	6E-6	(orotic acid)	0.8280274	[0.47-1.19] unit decrease	Affymetrix [at least 2500000] (imputed)	N
676	chr2	12035554	12035555	rs6432241	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p25.1	NR	rs6432241-C	0.6883	3E-6	(EA)	0.0313	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
676	chr2	12037178	12037179	rs17605562	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA		AC096559.2	rs17605562-T	NR	9E-6				Illumina [~ 1000000] (imputed)	N
676	chr2	12037491	12037492	rs4027132	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	2p25.1	NR	rs4027132-?	NR	3E-6	(recessive)			Affymetrix [NR]	N
676	chr2	12038627	12038628	rs118096157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	2p25.1		rs118096157-C	0.001822358	2E-8		1.7663666	[1.15-2.38] unit increase	Illumina [13429953] (imputed)	N
676	chr2	12038627	12038628	rs118096157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Iron deficiency anemia	12,317 European ancestry cases, 468,624 European ancestry controls, 4,618 East Asian ancestry cases, 174,057 East Asian ancestry controls	NA	2p25.1		rs118096157-C	NR	2E-8		1.7664	[1.15-2.38] unit increase	Affymetrix, Illumina [25844780] (imputed)	N
677	chr2	12078495	12078496	rs2716613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p25.1		rs2716613-?	NR	1E-8				NR [~ 8900000] (imputed)	N
677	chr2	12078495	12078496	rs2716613	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p25.1	NR	rs2716613-A	0.276249	1E-8		0.0194488	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
677	chr2	12102122	12102123	rs62115045	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	2p25.1		rs62115045-A	0.1836	7E-8		0.056	[0.036-0.076] unit increase	Affymetrix, Illumina [8662096] (imputed)	N
677	chr2	12104444	12104445	rs2255293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p25.1	NR	rs2255293-C	NR	8E-10		0.018	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
677	chr2	12104444	12104445	rs2255293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p25.1	NR	rs2255293-C	NR	2E-9		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
677	chr2	12104444	12104445	rs2255293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p25.1	AC096559.1	rs2255293-C	0.790933	7E-10		0.016805043	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr2	12104444	12104445	rs2255293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p25.1	AC096559.1	rs2255293-C	0.790935	3E-9		0.016149936	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
677	chr2	12115478	12115479	rs1595810	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p25.1	MIR3681HG	rs1595810-A	0.1952	4E-10		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
677	chr2	12129328	12129329	rs6432244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p25.1		rs6432244-?	NR	8E-15				NR [~ 8900000] (imputed)	N
677	chr2	12180913	12180914	rs2165220	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	2p24.3	LPIN1	rs2165220-C		4E-6		5.935	unit decrease	Illumina [635970]	N
677	chr2	12186334	12186335	rs893787	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	2p24.3	NR	rs893787-C	0.4503	5E-7		1.18	[1.10-1.25]	Affymetrix [at least 416462] (imputed)	N
678	chr2	12190892	12190893	rs76972305	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p24.3	NR	rs76972305-?	NR	2E-6		4.788	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
678	chr2	12212444	12212445	rs16858228	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.3	ST13P1	rs16858228-G	0.146	1E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
678	chr2	12212802	12212803	rs116375068	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p24.3	AK001558	rs116375068-A	0.998	9E-7	(AA)	1.007	NR unit increase	Illumina [NR] (imputed)	N
678	chr2	12252349	12252350	rs17551536	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	2p24.3	LOC729992, LOC100288243	rs17551536-G	0.13	5E-6		1.4706	[0.58-0.8]	Illumina [1795103]	N
679	chr2	12399746	12399747	rs192110159	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	2p24.3	LOC100506457	rs192110159-G	0.0012	3E-8		2.4142	NR	Affymetrix [up to 17556449] (imputed)	N
679	chr2	12399746	12399747	rs192110159	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement	3,864 European ancestry cases, 208,258 European ancestry controls	NA	2p24.3	LOC100506457	rs192110159-G	0.0012	4E-9		3.4	[2.25-5.13]	Affymetrix [17556449] (imputed)	N
679	chr2	12421433	12421434	rs138801803	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs138801803-C	0.01045	9E-11	(GGT5)	0.1076	NR unit increase	Illumina [1671387] (imputed)	N
680	chr2	12523632	12523633	rs7589913	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p24.3	NR	rs7589913-G	0.171	8E-9	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
680	chr2	12531862	12531863	rs62115715	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p24.3	NR	rs62115715-C	0.027788000000000035	8E-14		0.0295327	[0.022-0.037] unit increase	Affymetrix [16578495] (imputed)	N
680	chr2	12532532	12532533	rs17465169	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p24.3	NR	rs17465169-A	0.124	1E-7	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
680	chr2	12553837	12553838	rs11677203	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	2p24.3	LOC100506457	rs11677203-?	NR	6E-6	(Delta power, Cz)	0.055	[0.031-0.079] unit decrease	Illumina [527829]	N
680	chr2	12555163	12555164	rs34269793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p24.3	NR	rs34269793-C	0.05251499999999998	2E-25		0.0644978	[0.052-0.077] unit increase	Affymetrix [16580851] (imputed)	N
680	chr2	12555163	12555164	rs34269793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p24.3	NR	rs34269793-C	0.052736000000000005	2E-10		0.033339	[0.022-0.044] unit increase	Affymetrix [16585745] (imputed)	N
680	chr2	12567936	12567937	rs13022088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.3		rs13022088-?	NR	3E-12				NR [~ 8900000] (imputed)	N
680	chr2	12568995	12568996	rs10929808	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2p24.3	NR	rs10929808-?	NR	4E-6		1.3678	[NR]	Affymetrix [722112]	N
681	chr2	12607892	12607893	rs11899404	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p24.3	LOC100506457	rs11899404-C	NR	2E-8		1.0546298	NR	Affymetrix, Illumina [8278136] (imputed)	N
681	chr2	12630660	12630661	rs115377539	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs115377539-T	0.01394	5E-9	(ALDH5A1)	0.2743	NR unit increase	Illumina [1671387] (imputed)	N
681	chr2	12630660	12630661	rs115377539	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs115377539-T	0.01394	2E-8	(SPTAN1)	0.4473	NR unit increase	Illumina [1671387] (imputed)	N
681	chr2	12634277	12634278	rs1881145	31050781	Zhao SX	2019-05-03	JAMA Netw Open	Assessment of Molecular Subtypes in Thyrotoxic Periodic Paralysis and Graves Disease Among Chinese Han Adults: A Population-Based Genome-Wide Association Study.	Thyrotoxic hypokalemic periodic paralysis and Graves disease	171 Han Chinese ancestry cases, 2,160 Han Chinese ancestry controls	362 Han Chinese ancestry cases, 1,089 Han Chinese ancestry controls	2p24.3	NR	rs1881145-?	0.6	3E-6		1.39	[1.21-1.60]	Illumina [2752055] (imputed)	N
681	chr2	12634793	12634794	rs1881146	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	2p24.3	2p24	rs1881146-T	0.310529	5E-8		0.09517027	[0.061-0.129] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
681	chr2	12635742	12635743	rs6709385	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.3	NR	rs6709385-?	NR	7E-11				Affymetrix [NR]	N
681	chr2	12640346	12640347	rs7565618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2p24.3		rs7565618-T	NR	2E-19		0.079	[0.062-0.096] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
681	chr2	12640740	12640741	rs1534422	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2p24.3	MIR4262, TRIB2	rs1534422-G	0.46	3E-7		1.06	[1.04-1.09]	Illumina [161311]	N
681	chr2	12640740	12640741	rs1534422	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	2p24.3	TRIB2	rs1534422-G	0.455	5E-6		1.16	[1.09-1.24]	Illumina [103875]	N
681	chr2	12640740	12640741	rs1534422	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	2p24.3	TRIB2	rs1534422-G	0.455	2E-7		1.17	[1.11-1.25]	Illumina [103875]	N
681	chr2	12640740	12640741	rs1534422	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	2p24.3	intergenic	rs1534422-G	0.46	2E-6		1.08	[1.02-1.15]	Affymetrix, Illumina [841622] (imputed)	N
681	chr2	12644735	12644736	rs1534430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2p24.3		rs1534430-T	NR	1E-17		0.086	[0.066-0.106] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
681	chr2	12644735	12644736	rs1534430	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2p24.3	NR	rs1534430-C	0.615	3E-20		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
681	chr2	12644735	12644736	rs1534430	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2p24.3	AC096559.1	rs1534430-T	0.389139	2E-18		0.08207014	[0.064-0.1] unit decrease	Affymetrix [7288503] (imputed)	N
681	chr2	12644735	12644736	rs1534430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2p24.3		rs1534430-?	NR	7E-17				NR [~ 8900000] (imputed)	N
681	chr2	12644735	12644736	rs1534430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p24.3		rs1534430-?	NR	1E-8				NR [~ 8900000] (imputed)	N
681	chr2	12644735	12644736	rs1534430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2p24.3		rs1534430-?	NR	1E-13				NR [~ 8900000] (imputed)	N
681	chr2	12652930	12652931	rs10169963	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2p24.3	AC096559.1	rs10169963-T	0.58	3E-8		1.074		Illumina [715631] (imputed)	N
681	chr2	12652930	12652931	rs10169963	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2p24.3	AC096559.1	rs10169963-T	0.58	3E-8		1.074		Illumina [715631] (imputed)	N
682	chr2	12723748	12723749	rs13387947	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.3	LPIN1	rs13387947-?	NR	6E-6	(phosphocreatine)	0.21780132	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
682	chr2	12761322	12761323	rs150226882	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p24.3	NR	rs150226882-?	NR	4E-8				Illumina [7760689] (imputed)	N
682	chr2	12787129	12787130	rs56175057	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	2p24.3		rs56175057-?	NR	3E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
682	chr2	12797852	12797853	rs72779695	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2p24.3	TRIB2	rs72779695-T	0.1222	5E-9		0.0849	[0.056-0.113] unit decrease	NR [9744772] (imputed)	N
682	chr2	12797852	12797853	rs72779695	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p24.3	NR	rs72779695-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
682	chr2	12808062	12808063	rs62124708	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p24.3	Intergenic	rs62124708-T	0.0925	2E-8	(MTAG)	0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
682	chr2	12817005	12817006	rs62124717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p24.3	Intergenic	rs62124717-A	0.0924	1E-11	(MTAG)	0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
682	chr2	12817005	12817006	rs62124717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p24.3	Intergenic	rs62124717-A	0.0911	7E-11	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
682	chr2	12818509	12818510	rs1126191	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2p24.3	GREB1, LPIN1	rs1126191-A	0.444617	6E-6		0.789	[0.711 - 0.874]	Illumina [5397362] (imputed)	N
682	chr2	12822994	12822995	rs62124718	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p24.3	LPIN1, TRIB2	rs62124718-G	0.10499999999999998	3E-13		1.0457141		Affymetrix [11880941] (imputed)	N
682	chr2	12836639	12836640	rs55826493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p24.3		rs55826493-T	0.1216	3E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
683	chr2	12851119	12851120	rs7607490	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p24.3	NA	rs7607490-A	0.1099	1E-9		0.0164	[0.011-0.022] unit increase	NR [~ 27400000] (imputed)	N
683	chr2	12854005	12854006	rs4133529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p24.3		rs4133529-?	NR	9E-9				NR [~ 8900000] (imputed)	N
683	chr2	12862904	12862905	rs6719434	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p24.3	NR	rs6719434-C	NR	6E-11		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
683	chr2	12867503	12867504	rs890069	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		TRIB2	rs890069-T	NR	1E-8		0.98	[0.97-0.99]	Affymetrix [9869154] (imputed)	N
683	chr2	12877059	12877060	rs35330522	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p24.3		rs35330522-G	0.524	3E-11				Affymetrix [10369434] (imputed)	N
683	chr2	12877059	12877060	rs35330522	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	2p24.3	NR	rs35330522-A	NR	1E-8		0.961		Affymetrix [9869154] (imputed)	N
683	chr2	12877059	12877060	rs35330522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p24.3	TRIB2	rs35330522-A	0.476773	2E-19		0.020346355	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12877059	12877060	rs35330522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs35330522-A	0.534628	3E-26				Affymetrix, Illumina [24588908] (imputed)	N
683	chr2	12877306	12877307	rs13016883	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	2p24.3	TRIB2	rs13016883-C	NR	4E-8	(EA)	0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
683	chr2	12877306	12877307	rs13016883	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	2p24.3	TRIB2	rs13016883-C	NR	2E-11		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
683	chr2	12889030	12889030	rs58942008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p24.3		rs58942008-AATT	0.384689	1E-9		0.013899874	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12890859	12890860	rs2113818	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	2p24.3	TRIB2	rs2113818-T	0.49	4E-8	(EA)	0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr2	12890859	12890860	rs2113818	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	2p24.3	TRIB2	rs2113818-T	0.49	1E-9		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr2	12891475	12891476	rs730126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs730126-C	0.466399	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
683	chr2	12891475	12891476	rs730126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p24.3		rs730126-?	NR	1E-10				NR [~ 8900000] (imputed)	N
683	chr2	12892797	12892798	rs2059429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p24.3		rs2059429-C	NR	4E-17		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
683	chr2	12893976	12893977	rs2059427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p24.3	intergenic	rs2059427-T	0.371721	6E-18		0.019816794	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12893976	12893977	rs2059427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p24.3	NR	rs2059427-T	0.371788	2E-17		0.016322	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
683	chr2	12898459	12898460	rs4669869	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p24.3		rs4669869-C	0.44	7E-11				NR [NR] (imputed)	N
683	chr2	12898459	12898460	rs4669869	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p24.3		rs4669869-C	0.44	3E-9		0.009	% increase	NR [NR] (imputed)	N
683	chr2	12898459	12898460	rs4669869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p24.3		rs4669869-C	0.445468	3E-20		0.02100696	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12898459	12898460	rs4669869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs4669869-C	0.492265	1E-23				Affymetrix, Illumina [23467995] (imputed)	N
683	chr2	12898459	12898460	rs4669869	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p24.3	NR	rs4669869-C	0.44511	4E-27		0.020401	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
683	chr2	12910083	12910084	rs890074	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p24.3	TRIB2	rs890074-G	0.51785	8E-12		0.0125556	[0.009-0.0162] unit decrease	NR [13737936] (imputed)	N
683	chr2	12913015	12913015	rs113470064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p24.3		rs113470064-CATAAATAAATAA	NR	9E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
683	chr2	12914540	12914541	rs4669873	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2p24.3		rs4669873-A	0.506	3E-13				Affymetrix [10369434] (imputed)	N
683	chr2	12915866	12915867	rs4669875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p24.3		rs4669875-C	0.411608	2E-18		0.019670079	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12915866	12915867	rs4669875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs4669875-C	0.461479	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
683	chr2	12915866	12915867	rs4669875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p24.3	NR	rs4669875-C	0.413868	2E-10		0.011962	[0.0083-0.0156] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
683	chr2	12915866	12915867	rs4669875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs4669875-C	0.457144	2E-21				Affymetrix, Illumina [24558453] (imputed)	N
683	chr2	12915866	12915867	rs4669875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p24.3	NR	rs4669875-C	0.414067	2E-23		0.018696	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
683	chr2	12916918	12916919	rs7581972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p24.3		rs7581972-?	NR	2E-21				NR [~ 8900000] (imputed)	N
683	chr2	12917413	12917414	rs9287748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p24.3		rs9287748-T	NR	2E-14		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
683	chr2	12928970	12928971	rs6432335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs6432335-G	0.492072	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
683	chr2	12928970	12928971	rs6432335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p24.3	NR	rs6432335-G	0.451562	2E-10		0.012236	[0.0085-0.016] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
683	chr2	12930329	12930330	rs71450364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p24.3		rs71450364-T	0.311988	4E-15		0.018668171	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12931091	12931092	rs1863176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs1863176-C	0.552717	2E-21				Affymetrix, Illumina [24649327] (imputed)	N
683	chr2	12931091	12931092	rs1863176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p24.3	NR	rs1863176-C	0.496944	6E-24		0.018542	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
683	chr2	12934005	12934006	rs34903249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p24.3		rs34903249-A	NR	9E-17		0.0202	[0.015-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
683	chr2	12934005	12934006	rs34903249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p24.3		rs34903249-A	NR	4E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
683	chr2	12936910	12936911	rs111290813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.3		rs111290813-?	NR	2E-9				NR [~ 8900000] (imputed)	N
683	chr2	12942652	12942653	rs4669879	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p24.3		rs4669879-C	NR	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
683	chr2	12942652	12942653	rs4669879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p24.3	NR	rs4669879-C	0.452179	3E-29		0.020688	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
683	chr2	12950123	12950124	rs1469217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p24.3	NR	rs1469217-C	0.493147	1E-17		0.018851828	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12951751	12951752	rs2113814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p24.3		rs2113814-T	0.492023	3E-15		0.01743161	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
683	chr2	12951751	12951752	rs2113814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs2113814-T	0.531496	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
683	chr2	12951778	12951779	rs2113812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p24.3	NR	rs2113812-G	0.491048	3E-18		0.01648	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
683	chr2	12953263	12953264	rs11685678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p24.3		rs11685678-A	NR	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
683	chr2	12954799	12954800	rs201757987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p24.3		rs201757987-C	NR	1E-11		0.0133	[0.0096-0.017] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
683	chr2	12959809	12959810	rs4668792	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2p24.3		rs4668792-C	0.508	4E-8				Affymetrix [10369434] (imputed)	N
683	chr2	12962314	12962315	rs10191751	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	2p24.3	TRIB2, LOC100506474	rs10191751-G	0.65	1E-6		1.3		Illumina [8974355] (imputed)	N
683	chr2	12962677	12962678	rs10192149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p24.3		rs10192149-?	NR	1E-10				NR [~ 8900000] (imputed)	N
683	chr2	12964496	12964497	rs10198628	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial fat	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	2p24.3	TRIB2	rs10198628-?	0.42	4E-15		7.87	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
683	chr2	12964496	12964497	rs10198628	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 3,640 European ancestry men, 1,284 African American women, 877 African American men, 746 Hispanic Ancestry women, 699 Hispanic ancestry men, 390 Asian ancestry women, 378 Asian ancestry men,  294 Old Order Amish (founder/genetic isolate) women, 248 Old Order Amish (founder/genetic isolate) men.	NA	2p24.3	TRIB2	rs10198628-A	0.42	7E-19		8.88	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
683	chr2	12964496	12964497	rs10198628	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,684 European ancestry women, 1,284 African American women, 746 Hispanic Ancestry women, 390 Asian ancestry women, 294 Old Order Amish (founder/genetic isolate) women	NA	2p24.3	TRIB2	rs10198628-A	0.42	2E-9		6.02	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
683	chr2	12964496	12964497	rs10198628	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Pericardial adipose tissue adjusted for height and weight	3,640 European ancestry men, 877 African American men, 699 Hispanic ancestry men, 378 Asian ancestry men, 248 Old Order Amish (founder/genetic isolate) men.	NA	2p24.3	TRIB2	rs10198628-A	0.43	2E-11		6.68	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
683	chr2	12964496	12964497	rs10198628	22589742	Fox CS	2012-05-10	PLoS Genet	Genome-wide association of pericardial fat identifies a unique locus for ectopic fat.	Pericardial fat	5,487 European ancestry individuals	1,442 African American individuals, 1,399 Hispanic individuals, 761 Chinese ancestry individuals	2p24.3	TRIB2	rs10198628-?	NR	5E-14				Affymetrix [~ 2500000] (imputed)	N
683	chr2	12968899	12968900	rs10180496	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	2p24.3	TRIB2	rs10180496-?	NR	1E-7	(DMFS5, DMFS5mand)			Illumina [518997]	N
684	chr2	12978462	12978463	rs13020178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p24.3	NR	rs13020178-A	NR	8E-10		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	9E-9	(80 ms)	0.0326178	[0.022-0.043] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	7E-9	(74 ms)	0.0324028	[0.022-0.043] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	4E-8	(76 ms)	0.0307475	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	3E-8	(72 ms)	0.0308996	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	3E-8	(56 ms)	0.0308179	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	3E-8	(54 ms)	0.0310745	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12978462	12978463	rs13020178	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p24.3	TRIB2	rs13020178-G	0.505034	1E-8	(78 ms)	0.0323264	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
684	chr2	12982418	12982419	rs13430442	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2p24.3	TRIB2	rs13430442-C	0.3	9E-6	(African American)	0.19	0.11-0.27 unit decrease	Illumina [NR] (imputed)	N
684	chr2	12986823	12986824	rs116091104	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p24.3	intergenic	rs116091104-C	NR	5E-6		0.43190026	[0.25-0.61] unit decrease	Illumina [> 6200000] (imputed)	N
684	chr2	12994549	12994550	rs116434579	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	2p24.3	NR	rs116434579-G		8E-6		0.3734	[0.21-0.54] SD units increase	NR [10700000] (imputed)	N
684	chr2	13028546	13028547	rs6739633	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	2p24.3	NR	rs6739633-G		8E-6				Illumina [458865]	N
684	chr2	13051378	13051379	rs779355	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.3	NR	rs779355-?	NR	4E-6				Affymetrix [NR]	N
684	chr2	13073038	13073038	rs10639342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2p24.3	AC064875.2	rs10639342-A	NR	1E-9		0.0205305	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
684	chr2	13073038	13073038	rs10639342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p24.3	AC064875.2	rs10639342-A	NR	1E-9		0.0205362	[0.014-0.027] unit increase	Affymetrix [127266] (imputed)	N
684	chr2	13073966	13073967	rs711869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs711869-G	NR	6E-12		0.0195427	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
684	chr2	13073966	13073967	rs711869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs711869-G	NR	3E-12		0.0198793	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
684	chr2	13073966	13073967	rs711869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs711869-G	NR	7E-16		0.023906	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
684	chr2	13073966	13073967	rs711869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs711869-G	NR	3E-12		0.0198003	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
684	chr2	13073966	13073967	rs711869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p24.3	NR	rs711869-?	NR	6E-23				Affymetrix [~ 8270000] (imputed)	N
684	chr2	13073966	13073967	rs711869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p24.3	NR	rs711869-G	0.44	2E-25		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
684	chr2	13073966	13073967	rs711869	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p24.3	NR	rs711869-G	0.44	5E-8				Affymetrix [2446094] (imputed)	N
684	chr2	13073966	13073967	rs711869	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p24.3	NR	rs711869-A	0.5566	2E-24		0.0186	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
684	chr2	13073966	13073967	rs711869	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p24.3	NA	rs711869-A	0.5566	2E-21		0.0171	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
684	chr2	13073966	13073967	rs711869	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p24.3	NR	rs711869-A	0.5566	2E-21		0.0171	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
684	chr2	13085165	13085166	rs779388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p24.3	NR	rs779388-T	0.556	7E-24		0.0181	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
684	chr2	13085165	13085166	rs779388	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2p24.3	NR	rs779388-T	0.5559	9E-21		0.0167	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
684	chr2	13085598	13085599	rs7558953	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs7558953-T	NR	9E-9		0.0176082	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
684	chr2	13088062	13088063	rs779390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p24.3		rs779390-?	NR	3E-25				NR [~ 8900000] (imputed)	N
684	chr2	13089731	13089732	rs779392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs779392-G	NR	1E-8		0.0172043	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
684	chr2	13089731	13089732	rs779392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs779392-G	NR	4E-9		0.0183156	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
684	chr2	13090180	13090181	rs779394	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs779394-G	NR	3E-9		0.0177248	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
684	chr2	13091443	13091444	rs779395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2p24.3	AC064875.2	rs779395-C	NR	2E-9		0.0197226	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
684	chr2	13091443	13091444	rs779395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p24.3	AC064875.2	rs779395-C	NR	7E-9		0.0182116	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
684	chr2	13092015	13092016	rs779396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p24.3		rs779396-?	NR	2E-11				NR [~ 8900000] (imputed)	N
685	chr2	13109021	13109022	rs779348	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p24.3	AC064875.2	rs779348-T	NR	3E-9		0.0182758	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
685	chr2	13121167	13121168	rs7578347	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	2p24.3	TRIB2	rs7578347-T	0.4320543080939948	3E-7	(AA)	0.3926	[0.24-0.54] unit increase	Illumina [at least 988306] (imputed)	N
685	chr2	13175368	13175369	rs78212733	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	2p24.3	LOC100506474, LINC00276	rs78212733-C	0.24	8E-10		6.16	NR z score decrease	Illumina [at least 900015] (imputed)	N
686	chr2	13252873	13252874	rs73194819	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	2p24.3	NR	rs73194819-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.5384616	[NR]	Affymetrix, Illumina [NR] (imputed)	N
688	chr2	13528297	13528298	rs13000558	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2p24.3	LOC100506474	rs13000558-T	0.158	5E-6		0.14	[0.08-0.20] unit increase	Affymetrix [7435577] (imputed)	N
688	chr2	13628447	13628448	rs12692501	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	2p24.3	intergenic	rs12692501-A	NR	1E-6		1.2	[1.12-1.30]	Affymetrix, Illumina [NR] (imputed)	N
689	chr2	13682803	13682804	rs13405366	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p24.3	TRIB2, FAM84A	rs13405366-A	0.024	1E-6		4.3	[2.28-8.12]	Illumina [1556551]	N
689	chr2	13725772	13725773	rs188580420	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2p24.3	NR	rs188580420-?	NR	5E-12		6.914	NR z score increase	Illumina [at least 830937] (imputed)	N
689	chr2	13726612	13726613	rs1877101	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p24.3	TRIB2, FAM84A	rs1877101-G	0.004	7E-6		9.55	[2.88-31.66]	Illumina [1556551]	N
690	chr2	13788407	13788408	rs1606045	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p24.3	AC092635.1	rs1606045-?	NR	1E-8		0.006771	[0.0016-0.0119] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
690	chr2	13847986	13847987	rs144356690	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	2p24.3	NR	rs144356690-A	0.00834446	5E-6		1.069	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
692	chr2	14029747	14029748	rs1598106	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p24.3	NR	rs1598106-C	0.408824843693694	2E-7	(IGP20)	0.1642	[0.1-0.23] unit decrease	Illumina [~ 2500000] (imputed)	N
693	chr2	14157254	14157255	rs183699028	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p24.3	Intergenic	rs183699028-A	0.989	2E-6		0.303	NR unit increase	Illumina [NR] (imputed)	N
693	chr2	14176646	14176647	rs540406544	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs540406544-A	0.0122	6E-11	(EPHX1)	8.313	NR unit increase	Illumina [1671387] (imputed)	N
693	chr2	14176646	14176647	rs540406544	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs540406544-A	0.0122	4E-9	(PON1)	0.2273	NR unit increase	Illumina [1671387] (imputed)	N
693	chr2	14176646	14176647	rs540406544	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs540406544-A	0.0122	2E-8	(UGT2B4)	0.4928	NR unit increase	Illumina [1671387] (imputed)	N
693	chr2	14203644	14203645	rs149960642	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p24.3	Intergenic	rs149960642-T	0.99	5E-7		0.294	NR unit increase	Illumina [NR] (imputed)	N
693	chr2	14208308	14208309	rs13384450	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p24.3	NR	rs13384450-?	NR	8E-6		3.81	[2.92-4.99]	Illumina [539000] (imputed)	N
693	chr2	14218093	14218094	rs360488	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	2p24.3	FAM84A	rs360488-A	NR	4E-7	(%LAA-950, All)	0.09	[0.016-0.164] unit increase	Illumina [7600000] (imputed)	N
694	chr2	14295358	14295359	rs76724023	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs76724023-T	0.01045	6E-11	(TTC38)	0.1875	NR unit decrease	Illumina [1671387] (imputed)	N
694	chr2	14325105	14325106	rs189158922	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2p24.3		rs189158922-C	0.0019392	7E-6		0.34264	[0.19-0.49] unit increase	Affymetrix [15580782] (imputed)	N
694	chr2	14398051	14398052	rs16861531	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	2p24.3	intergenic	rs16861531-G	0.03	7E-7	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
695	chr2	14539476	14539477	rs2014149	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p24.3	LINC00276	rs2014149-T	0.474611	1E-8		0.0119895	[0.0079-0.0161] unit increase	NR [16516521] (imputed)	N
696	chr2	14620694	14620695	rs6724035	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs6724035-C	0.0122	2E-8	(GYG2)	0.01191	NR unit increase	Illumina [1671387] (imputed)	N
696	chr2	14648907	14648908	rs10193074	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	2p24.3	Intergenic	rs10193074-?	NR	4E-6		3.846154		Affymetrix [8800000] (imputed)	N
696	chr2	14657185	14657186	rs4669995	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	2p24.3	TRIB2, FAM84A	rs4669995-?	NR	8E-6			NR	Illumina [up to 317503]	N
696	chr2	14665841	14665842	rs4340489	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	2p24.3	FAM84A	rs4340489-A	0.459	2E-6		0.11	[0.065-0.155] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
697	chr2	14702348	14702349	rs10181834	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	2p24.3	TRIB2, FAM84A	rs10181834-?	NR	8E-6			NR	Illumina [up to 317503]	N
697	chr2	14780130	14780131	rs8849	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	2p24.3	NR	rs8849-A	0.9204773	2E-6		1.1363636	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
697	chr2	14801500	14801501	rs7602441	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p24.3	FAM84A	rs7602441-G	0.88	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
698	chr2	14849341	14849342	rs2714300	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	2p24.3	NR	rs2714300-C	NR	4E-6				NR [NR] (imputed)	N
698	chr2	14849341	14849342	rs2714300	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	2p24.3	NBAS	rs2714300-C	NR	4E-6				NR [NR] (imputed)	N
698	chr2	14849341	14849342	rs2714300	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	2p24.3	NBAS	rs2714300-T	0.8383	7E-6		0.1826	[0.1-0.26] unit decrease	NR [NR] (imputed)	N
698	chr2	14849341	14849342	rs2714300	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	2p24.3	NBAS	rs2714300-T	NR	7E-6		0.1826	[0.1-0.26] unit decrease	NR [NR] (imputed)	N
699	chr2	14967137	14967138	rs2705863	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	2p24.3	intergenic	rs2705863-T	NR	2E-6	(adjusted for clinical variables)			Illumina [up to 3923932] (imputed)	N
700	chr2	15131581	15131582	rs6750426	31388106	Sofer T	2019-08-06	Sci Rep	Variants Associated with the Ankle Brachial Index Differ by Hispanic/Latino Ethnic Group: a genome-wide association study in the Hispanic Community Health Study/Study of Latinos.	Ankle-brachial index	700 Dominican ancestry individuals	up to 8,527 European ancestry individuals, 2,362 African American individuals, 1,447 Hispanic/Latino individuals	2p24.3	intergenic	rs6750426-G	0.75	1E-6	(Dominican)	0.031	[0.019-0.043] unit increase	Illumina [27887661] (imputed)	N
700	chr2	15158008	15158009	rs138993181	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Multiple consecutive miscarriage	750 European ancestry cases, 150,215 European ancestry controls	NA	2p24.3	NR	rs138993181-A	0.006	2E-8		3.61	[2.23-5.84]	Affymetrix, Illumina [8956145] (imputed)	N
700	chr2	15172548	15172549	rs1430797	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.3	NR	rs1430797-?	NR	4E-8				Affymetrix [NR]	N
701	chr2	15214954	15214955	rs6714740	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	2p24.3	intergenic	rs6714740-C	0.27	1E-6	(female)	0.258	[0.15-0.36] unit decrease	Illumina [6380737] (imputed)	N
701	chr2	15216615	15216616	rs2033354	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	2p24.3	intergenic	rs2033354-T	0.784	4E-7	(Hispanic)	0.022	[0.014-0.030] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
701	chr2	15216615	15216616	rs2033354	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	2p24.3	NR	rs2033354-T	NR	8E-6	(Hispanic, females)	0.026	[0.014-0.038] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
701	chr2	15310513	15310514	rs67654717	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	2p24.3	NR	rs67654717-T		9E-6		0.1649	[0.092-0.238] unit decrease	Illumina [12770451] (imputed)	N
701	chr2	15334250	15334251	rs4668882	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	2p24.3	NR	rs4668882-?	NR	3E-8			[NR]	NR [1665663]	N
702	chr2	15359338	15359339	rs10206716	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	25,501 European ancestry women	NA	2p24.3	NBAS	rs10206716-T	NR	3E-7		1.09278	[0.67-1.51] unit decrease	NR [9955952] (imputed)	N
702	chr2	15367202	15367203	rs79713359	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	2p24.3	NBAS	rs79713359-T	0.01	9E-6		0.22	[0.12-0.32] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
702	chr2	15380644	15380645	rs11680223	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	2p24.3		rs11680223-T	0.166	1E-5		0.049	[0.027-0.071] unit increase	Illumina [6361597] (imputed)	N
702	chr2	15385483	15385484	rs9287655	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	2p24.3	ENSG151779	rs9287655-?		1E-6	(endpoint 5, additive)	1.5625	[NR]	Illumina [> 750000]	N
702	chr2	15385483	15385484	rs9287655	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	2p24.3	ENSG151779	rs9287655-?		1E-6	(endpoint 4, additive)	1.5151515	[NR]	Illumina [> 750000]	N
702	chr2	15393315	15393316	rs2042144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p24.3		rs2042144-C	NR	6E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
702	chr2	15398963	15398964	rs10929355	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	2p24.3	NR	rs10929355-G	0.4558	6E-9		0.0075	[0.005-0.01] unit decrease	NR [7666894] (imputed)	N
702	chr2	15423488	15423489	rs145369641	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2p24.3	NBAS	rs145369641-T	0.005	2E-6		8.04	[3.43-18.86]	Illumina [7959153] (imputed)	N
702	chr2	15433327	15433328	rs12613488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p24.3		rs12613488-T	0.684679	1E-11		0.0200184	[0.014-0.026] unit decrease	Illumina [13479924] (imputed)	N
702	chr2	15433327	15433328	rs12613488	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p24.3		rs12613488-T	0.684936	3E-10		0.0218276	[0.015-0.029] unit decrease	Illumina [13479178] (imputed)	N
703	chr2	15482751	15482752	rs13403179	25935106	Kim KW	2015-04-30	J Allergy Clin Immunol	Genome-wide association study of recalcitrant atopic dermatitis in Korean children.	Recalcitrant atopic dermatitis	246 Korean ancestry child cases, 551 Korean ancestry adult controls	NA	2p24.3	NBAS	rs13403179-C	0.054	8E-8		2.947	[1.989-4.386]	Affymetrix [2501352] (imputed)	N
703	chr2	15487109	15487110	rs13000361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p24.3		rs13000361-C	NR	7E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
703	chr2	15509145	15509146	rs7572081	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	2p24.3	NBAS	rs7572081-?		5E-7				NR [~ 3000000] (imputed)	N
703	chr2	15511269	15511270	rs13019322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p24.3		rs13019322-A	NR	7E-12		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
703	chr2	15512722	15512723	rs17668738	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	2p24.3	NBAS	rs17668738-T	0.92	4E-6		0.07	[0.031-0.109] unit decrease	Illumina [1632371] (imputed)	N
704	chr2	15598739	15598740	rs7605827	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p24.3	NR	rs7605827-A	0.2893	5E-8		0.015843822	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
704	chr2	15616214	15616215	rs2111449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p24.3	Intergenic	rs2111449-T	0.7345	7E-9	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
704	chr2	15664755	15664756	rs7581919	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2p24.3	NAG	rs7581919-C	0.041	8E-6		1.85	[1.41-2.43]	Illumina [948658]	N
704	chr2	15666801	15666802	rs79833181	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	2p24.3	NR	rs79833181-C	0.02	2E-9		0.86	[0.59-1.13] unit increase	Affymetrix [9231066] (imputed)	N
704	chr2	15666801	15666802	rs79833181	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	2p24.3	NR	rs79833181-C	0.02	2E-9		0.86	[0.59-1.13] unit increase	Affymetrix [9231066] (imputed)	N
704	chr2	15691790	15691791	rs55977282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p24.3	Intergenic	rs55977282-T	0.2704	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
704	chr2	15722379	15722380	rs7601397	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.3	NAG	rs7601397-?	NR	6E-6	(indole-3-propionate)	0.35418174	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
704	chr2	15722628	15722629	rs72780837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p24.3	NR	rs72780837-A	NR	4E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
705	chr2	15729819	15729820	rs3755132	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	2p24.3	MYCN, DDX1	rs3755132-G	0.14	1E-14		1.45	[1.29-1.64]	Illumina [599255]	N
705	chr2	15733023	15733024	rs66822347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p24.3		rs66822347-T	NR	2E-18		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
705	chr2	15733023	15733024	rs66822347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p24.3		rs66822347-T	NR	2E-15		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
705	chr2	15782470	15782471	rs807624	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p24.3	NR	rs807624-T	0.36	1E-20		0.0177	[0.014-0.021] unit decrease	NR [NR]	N
705	chr2	15782470	15782471	rs807624	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p24.3	DDX1	rs807624-T	0.406	9E-10		0.33	[0.22-0.44] unit increase	Affymetrix [NR] (imputed)	N
705	chr2	15782470	15782471	rs807624	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p24.3	DDX1	rs807624-T	0.422	5E-17		0.0032	[0.0026-0.0038] unit increase	Affymetrix [NR] (imputed)	N
705	chr2	15782470	15782471	rs807624	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p24.3	DDX1	rs807624-T	0.4216	8E-31		0.0032	[0.0026-0.0038] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
705	chr2	15782470	15782471	rs807624	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p24.3	DDX1	rs807624-T	0.3428	3E-26		0.0034	[0.0026-0.0042] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
705	chr2	15782470	15782471	rs807624	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2p24.3	DDX1	rs807624-T	0.4216	3E-6		0.0035	[0.0021-0.0049] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
705	chr2	15782470	15782471	rs807624	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	2p24.3	MYCN, DDX1	rs807624-A	0.35	1E-14		1.33	[1.22-1.45]	Illumina [599255]	N
705	chr2	15788510	15788511	rs72782806	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p24.3	DDX1	rs72782806-A	0.2299	1E-9		0.0229	[0.015-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
705	chr2	15788510	15788511	rs72782806	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p24.3	DDX1	rs72782806-A	0.2595	8E-9		0.025282	[0.017-0.034] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
705	chr2	15788691	15788692	rs56019566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2p24.3		rs56019566-C	0.648388	4E-9		0.0218485	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
705	chr2	15792517	15792518	rs807603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p24.3		rs807603-C	NR	3E-33		0.021	[0.018-0.024] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
705	chr2	15792517	15792518	rs807603	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p24.3	DDX1	rs807603-C	0.6157	7E-15		7.778	NR z score increase	Illumina [26237160] (imputed)	N
705	chr2	15792517	15792518	rs807603	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p24.3	DDX1	rs807603-T	0.438	5E-14		0.383	[0.19-0.57] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
705	chr2	15793013	15793014	rs807601	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2p24.3	DDX1	rs807601-T	NR	4E-11		0.0067	[0.0047-0.0087] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
705	chr2	15793013	15793014	rs807601	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2p24.3	DDX1	rs807601-T	0.34	7E-12	(EA)	0.0064	[0.0046-0.0082] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
705	chr2	15808934	15808935	rs876718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p24.3	NR	rs876718-A	NR	4E-10		0.0247	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
705	chr2	15833098	15833099	rs6743428	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		2p24.3	NR	rs6743428-A	NR	6E-6	(conditioned on rs1426654)	0.266083	[0.15-0.38] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
706	chr2	15863001	15863002	rs6431731	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	2p24.3	DDX1	rs6431731-T	NR	5E-7		0.0124	[0.0075-0.0173] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
706	chr2	15863001	15863002	rs6431731	22479191	Pattaro C	2012-03-29	PLoS Genet	Genome-wide association and functional follow-up reveals new loci for kidney function.	Chronic kidney disease	74,354  European ancestry individuals	56,246 European ancestry individuals	2p24.3	DDX1	rs6431731-?	NR	4E-8		0.0127	[0.0082-0.0172] ml/min/1.73m^2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
706	chr2	15876416	15876417	rs191185851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p24.3	Intergenic	rs191185851-T	0.998	3E-7	(AA)	0.252	unit increase	Illumina [NR] (imputed)	N
706	chr2	15906178	15906179	rs10929386	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2p24.3	DDX1	rs10929386-C	0.49	9E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
706	chr2	15906853	15906854	rs2544536	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2p24.3	LOC101926966	rs2544536-T	0.4881	4E-17		0.0212	[0.016-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
706	chr2	15906853	15906854	rs2544536	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.3	LOC101926966	rs2544536-T	0.4881	2E-6		0.0111	[0.0066-0.0156] unit decrease	Affymetrix [19819130] (imputed)	N
706	chr2	15906853	15906854	rs2544536	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.3	LOC101926966	rs2544536-T	0.4881	4E-24		0.0239	[0.019-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
706	chr2	15906853	15906854	rs2544536	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.3	LOC101926966	rs2544536-T	0.4881	1E-20		0.0216	[0.017-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
706	chr2	15906853	15906854	rs2544536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p24.3		rs2544536-?	NR	4E-28				NR [~ 8900000] (imputed)	N
706	chr2	15920322	15920323	rs2544523	24993907	Smolonska J	2014-07-03	Eur Respir J	Common genes underlying asthma and COPD? Genome-wide analysis on the Dutch hypothesis.	Asthma or chronic obstructive pulmonary disease	920 European ancestry Asthma cases, 1,030 European ancestry Chronic obstructive pulmonary disease cases, 4,585 European ancestry controls	461 European ancestry Asthma cases, 118 European ancestry Chronic obstructive pulmonary disease cases, 656 European ancestry controls, 720 European, African American and Hispanic Asthma cases, 1,019 European, African American and Hispanic Chronic obstructive pulmonary disease cases, 19,173 European, African American and Hispanic controls, 1,106 Asthma cases, 1,806 Chronic obstructive pulmonary disease cases, 18,580 controls	2p24.3	MYCN, DDX1	rs2544523-T		1E-6		1.07	[NR]	Illumina [1811026]	N
706	chr2	15926167	15926168	rs2544527	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2p24.3	MYCN, DDX1	rs2544527-T	NR	2E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
706	chr2	15926167	15926168	rs2544527	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2p24.3	DDX1	rs2544527-T	NR	9E-6	(FEV1/FVC)	0.026	[0.014-0.038] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
706	chr2	15952056	15952057	rs11687741	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.3	DDX1	rs11687741-?	NR	6E-6	(creatine)	0.18215604	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
706	chr2	15961598	15961599	rs7586898	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p24.3	AC113608.1	rs7586898-C	NR	2E-6				Illumina [~ 1000000] (imputed)	N
707	chr2	16013589	16013590	rs4380195	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA	2p24.3	MYCNUT	rs4380195-A	0.3	5E-6				Illumina [1679420] (imputed)	N
707	chr2	16013589	16013590	rs4380195	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 non-carrier Alzheimer's disease	287 European ancestry individuals	NA	2p24.3	MYCNUT	rs4380195-A	0.3	1E-6		0.18	[0.11-0.25] unit decrease	Illumina [1679420] (imputed)	N
707	chr2	16016502	16016503	rs7602028	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p24.3	NR	rs7602028-C	NR	1E-13		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
707	chr2	16016502	16016503	rs7602028	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p24.3	NR	rs7602028-C	0.398	6E-7		1.103	[1.06-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
707	chr2	16026683	16026684	rs115688319	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs115688319-C	0.01045	4E-23	(AMBP)	0.1045	NR unit increase	Illumina [1671387] (imputed)	N
707	chr2	16049869	16049872	rs768291075	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2p24.3	NR	rs768291075-AAAAA	NR	1E-6		0.095	unit increase	Illumina [NR]	N
707	chr2	16058631	16058632	rs16863127	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2p24.3	NR	rs16863127-A	NR	8E-6		1.88	[1.43-2.48]	Illumina [13976150] (imputed)	N
707	chr2	16077198	16077199	rs12466146	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2p24.3	NR	rs12466146-T	0.4219	4E-8		0.01055	[0.0068-0.0143] unit increase	NR [8968716] (imputed)	N
707	chr2	16077198	16077199	rs12466146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p24.3		rs12466146-?	NR	2E-9				NR [~ 8900000] (imputed)	N
707	chr2	16086468	16086469	rs922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p24.3	MYCN	rs922-T	0.216223	8E-10		0.016434405	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
707	chr2	16086468	16086469	rs922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p24.3	NR	rs922-T	0.217089	1E-10		0.014709	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
707	chr2	16120505	16120506	rs35135518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p24.3		rs35135518-C	NR	4E-13		0.0118	[0.0087-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
707	chr2	16120505	16120506	rs35135518	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p24.3	NR	rs35135518-C	NR	7E-13		0.0276	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
707	chr2	16121532	16121533	rs12621634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.3		rs12621634-?	NR	3E-16				NR [~ 8900000] (imputed)	N
708	chr2	16123172	16123173	rs6735681	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p24.3	intergenic	rs6735681-T	0.8908	2E-19		0.0275	[0.022-0.033] unit increase	Affymetrix [18391927] (imputed)	N
708	chr2	16123172	16123173	rs6735681	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p24.3	MYCN, GACAT3	rs6735681-?	NR	2E-7		0.014835756	[0.0093-0.0204] unit decrease	Illumina [27896057] (imputed)	N
708	chr2	16127921	16127922	rs6719419	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p24.3	MYCN	rs6719419-A	0.0116167582303737	9E-6	(G_Ruminococcus_HB)	1.43346	[0.8-2.07] unit decrease	Illumina [7711310] (imputed)	N
708	chr2	16191544	16191545	rs55678912	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p24.3	NR	rs55678912-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
708	chr2	16203325	16203326	rs57726666	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	2p24.3	GACAT3	rs57726666-A	0.9125	2E-6		1.8855	[1.62-2.15]	Illumina [10736316] (imputed)	N
708	chr2	16226047	16226048	rs28495254	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p24.3	MYCN	rs28495254-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
708	chr2	16234067	16234068	rs28658452	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p24.3	MYCN, SNORA40	rs28658452-A	0.9147	4E-8		5.49	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
708	chr2	16238000	16238001	rs28758542	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p24.3	NR	rs28758542-G	0.3408	2E-9		0.0256	[0.017-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
708	chr2	16239564	16239565	rs72772444	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	2p24.3		rs72772444-C	NR	8E-6		1.0681478	[1.04-1.10]	Illumina [11600722] (imputed)	N
708	chr2	16241360	16241361	rs4668485	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p24.3	intergenic	rs4668485-T	NR	4E-6				Illumina [up to 11995908] (imputed)	N
708	chr2	16241360	16241361	rs4668485	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p24.3	intergenic	rs4668485-T	NR	2E-6	(EA)			Illumina [up to 11995908] (imputed)	N
710	chr2	16430348	16430349	rs72772496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p24.3		rs72772496-C	0.09	7E-72		17.93	z score increase	Affymetrix [9061022] (imputed)	N
710	chr2	16430348	16430349	rs72772496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p24.3		rs72772496-C	0.09	7E-24		10.08	z score increase	Affymetrix [9061022] (imputed)	N
710	chr2	16430348	16430349	rs72772496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p24.3		rs72772496-C	0.09	2E-34		12.24	z score increase	Affymetrix [9061022] (imputed)	N
710	chr2	16430348	16430349	rs72772496	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p24.3	NR	rs72772496-C	0.0696	1E-17				NR [9056863] (imputed)	N
710	chr2	16430348	16430349	rs72772496	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p24.3	NR	rs72772496-C	0.0696	1E-17				NR [9056863] (imputed)	N
710	chr2	16430348	16430349	rs72772496	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	2p24.3		rs72772496-?	NR	3E-27				NR [9705931] (imputed)	N
710	chr2	16430348	16430349	rs72772496	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p24.3	ROR1	rs72772496-?		5E-10				NR [7428630] (imputed)	N
710	chr2	16430348	16430349	rs72772496	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p24.3	NR	rs72772496-?		1E-8				NR [7428630] (imputed)	N
710	chr2	16430348	16430349	rs72772496	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p24.3	NR	rs72772496-T		5E-8		0.12	[0.081-0.159] unit increase	NR [NR]	N
710	chr2	16430348	16430349	rs72772496	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p24.3	NR	rs72772496-?	NR	9E-11	(left medial orbitofrontal)			NR [9227495] (imputed)	N
710	chr2	16462144	16462145	rs57244888	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	2p24.3	MYCN, FAM49A	rs57244888-T	0.898	5E-12		1.32	[1.22-1.43]	Illumina [24988228] (imputed)	N
710	chr2	16467186	16467187	rs11894986	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p24.3		rs11894986-?	NR	8E-13		0.874244	[0.84-0.91]	NR [685523]	N
710	chr2	16481188	16481189	rs6739779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2p24.3		rs6739779-T	NR	2E-16		0.1335	[0.1-0.17] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
710	chr2	16481188	16481189	rs6739779	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p24.3	AC010745.4	rs6739779-C	0.895502	1E-19		1.1363636	[1.11-1.18]	Affymetrix [7600000] (imputed)	N
710	chr2	16481188	16481189	rs6739779	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p24.3	AC010745.4	rs6739779-C	0.888497	7E-24		1.1494253	[1.11-1.19]	Affymetrix, Illumina [up to 9061544] (imputed)	N
710	chr2	16484004	16484005	rs340762	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p24.3	FAM49A	rs340762-T	0.45	9E-9		0.01	unit increase	Affymetrix [8928767] (imputed)	N
710	chr2	16490830	16490831	rs340797	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2p24.3	FAM49A	rs340797-T	0.104908	2E-25		0.19857544	[0.16-0.24] unit decrease	Affymetrix [7260263] (imputed)	N
710	chr2	16499633	16499634	rs16982256	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2p24.3	FAM49A	rs16982256-T	NR	5E-8		1.49	[1.29-1.73]	Affymetrix [5734850] (imputed)	N
711	chr2	16540054	16540055	rs74173263	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p24.3	NR	rs74173263-?		5E-6				Illumina [4322238] (imputed)	N
711	chr2	16574668	16574669	rs11680058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p24.3		rs11680058-A	NR	4E-9		0.0633	[0.042-0.084] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
711	chr2	16574668	16574669	rs11680058	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p24.3	NR	rs11680058-G	0.162	1E-8		0.0556	[0.036-0.075] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
711	chr2	16574668	16574669	rs11680058	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p24.3	FAM49A	rs11680058-A	0.863	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
711	chr2	16620802	16620803	rs6759839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p24.3		rs6759839-G	0.678794	4E-50		0.035885498	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr2	16620802	16620803	rs6759839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs6759839-A	0.329396	6E-61				Affymetrix, Illumina [17210439] (imputed)	N
711	chr2	16620802	16620803	rs6759839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p24.3	NR	rs6759839-A	0.32091	4E-63		0.034822	[0.031-0.039] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
711	chr2	16620802	16620803	rs6759839	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p24.3	intergenic	rs6759839-G	0.6785	1E-23		0.03924783	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
711	chr2	16624717	16624717	rs10655262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p24.3		rs10655262-TTAAA	0.734605	7E-12		0.017561939	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
711	chr2	16626886	16626887	rs4832443	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p24.3		rs4832443-T	NR	5E-8		0.0142	[0.0091-0.0193] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
711	chr2	16628946	16628947	rs2082123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p24.3		rs2082123-G	0.704286	1E-9		0.015031536	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr2	16631227	16631228	rs139767429	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.3	NR	rs139767429-A	0.01568	5E-9	(LUM)	0.2429	NR unit increase	Illumina [1671387] (imputed)	N
711	chr2	16632362	16632363	rs113122939	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Kandleria vitulina abundance in stool	5,959 Finnish ancestry individuals	NA	2p24.3		rs113122939-C	0.0321903	3E-8		0.149249	[0.097-0.202] unit increase	Illumina [7980478] (imputed)	N
711	chr2	16632471	16632472	rs1430039	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p24.3	Intergenic	rs1430039-A	0.7061	5E-13	(MTAG)	0.0104	[0.0077-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
711	chr2	16635774	16635775	rs1346749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.3	NR	rs1346749-T	0.623487	3E-10				Affymetrix, Illumina [20825802] (imputed)	N
711	chr2	16635774	16635775	rs1346749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p24.3	NR	rs1346749-T	0.707549	1E-12		0.01508	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
711	chr2	16639565	16639566	rs1346751	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2p24.3	FAM49A	rs1346751-?		8E-6	(AA)	10.0	[NR]	Illumina [936149]	N
712	chr2	16647169	16647170	rs1991585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p24.3		rs1991585-T	0.706	6E-11		0.0101	[0.0072-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
712	chr2	16648887	16648888	rs4832633	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	2p24.3	NR	rs4832633-?	NR	2E-12				Affymetrix, Illumina [6211246] (imputed)	N
712	chr2	16661087	16661088	rs725456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p24.3	Intergenic	rs725456-A	0.2501	8E-10	(MTAG)	0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
712	chr2	16679862	16679863	rs9967813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p24.3		rs9967813-T	0.2702	3E-10	(conditional-joint)	0.0102	[0.0071-0.0133] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
712	chr2	16680788	16680789	rs1430055	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p24.3	Intergenic	rs1430055-A	0.7019	2E-11	(MTAG)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
712	chr2	16684486	16684487	rs1430058	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p24.2	intergenic	rs1430058-C	0.365079	2E-9		0.013802926	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr2	16686616	16686617	rs17385012	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.2	MYCN	rs17385012-?	NR	9E-6	(CE 16:1)	0.42175207	[0.24-0.61] unit increase	Affymetrix [at least 2500000] (imputed)	N
712	chr2	16702398	16702399	rs4832646	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	2p24.2	NR	rs4832646-C	0.2613	1E-12		0.2476	[0.18-0.32] unit decrease	Affymetrix, Illumina [7567980] (imputed)	N
712	chr2	16702653	16702654	rs4632345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p24.2	AC104623.2	rs4632345-A	0.67843	3E-9		0.014079337	[0.0094-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
712	chr2	16702653	16702654	rs4632345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.2	NR	rs4632345-A	0.602441	7E-12				Affymetrix, Illumina [24649327] (imputed)	N
712	chr2	16702653	16702654	rs4632345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p24.2	NR	rs4632345-A	0.677622	4E-12		0.013718	[0.0099-0.0176] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
712	chr2	16706079	16706080	rs62114564	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals	NA	2p24.2	NR	rs62114564-T	0.2603	5E-8		0.2379	[0.15-0.32] unit decrease	Affymetrix, Illumina [7568033] (imputed)	N
712	chr2	16706770	16706771	rs4493263	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p24.2	NR	rs4493263-?	NR	5E-6		1.28	[1.19-1.37]	Illumina [539000] (imputed)	N
712	chr2	16710564	16710565	rs4832468	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	2p24.2	NR	rs4832468-?		9E-6		1.39	[1.20-1.60]	Illumina [539473] (imputed)	N
712	chr2	16713394	16713395	rs6745357	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	2p24.2	FAM49A	rs6745357-G		4E-10		0.25	[0.19-0.31] unit increase	Illumina [NR] (imputed)	N
712	chr2	16715407	16715408	rs4441471	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p24.2	NR	rs4441471-?	NR	7E-6		1.27	[1.21-1.34]	Illumina [539000] (imputed)	N
712	chr2	16715407	16715408	rs4441471	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p24.2	FAM49A	rs4441471-A	0.7195	3E-10		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
712	chr2	16715407	16715408	rs4441471	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2p24.2	NR	rs4441471-?	NR	8E-7	(Meta-All, NSCL/P)			NR [497084]	N
712	chr2	16729356	16729357	rs7566780	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	2p24.2	FAM49A	rs7566780-?	NR	1E-8		1.18	[1.07-1.29] (GENEVA cohort)	Illumina [6090031] (imputed)	N
712	chr2	16729356	16729357	rs7566780	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	2p24.2	FAM49A	rs7566780-?	NR	4E-9		1.2	[1.08-1.34] (GENEVA cohort)	Illumina [6090031] (imputed)	N
712	chr2	16733927	16733928	rs7552	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	2p24.2	FAM49A	rs7552-?	NR	3E-8		0.04	[0.028-0.052] unit increase	Illumina [at least 589945] (imputed)	N
712	chr2	16733927	16733928	rs7552	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	2p24.2	MYCN	rs7552-G	0.708	3E-6		1.2562814	NR	Illumina [at least 870261] (imputed)	N
712	chr2	16733927	16733928	rs7552	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	2p24.2	MYCN	rs7552-G	0.708	6E-17		1.5576323	NR	Illumina [at least 870261] (imputed)	N
712	chr2	16733927	16733928	rs7552	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	2p24.2	FAM49A	rs7552-G	0.7	6E-22		1.369863	[NR]	Illumina [803202]	N
713	chr2	16787420	16787421	rs76644544	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2p24.2		rs76644544-?	NR	2E-9				Illumina [1128286]	N
713	chr2	16857183	16857184	rs798374	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.2	NR	rs798374-?	NR	2E-16				Affymetrix [NR]	N
713	chr2	16907891	16907892	rs1722426	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy	2,468 European ancestry cases, 21,204 European ancestry controls, 481 African ancestry cases, 8,793 African ancestry controls, 168 Hispanic/Latino ancestry cases, 11,017 Hispanic/Latino ancestry controls	NA	2p24.2	intergenic	rs1722426-C	NR	2E-6		1.2820514	[1.15-1.41]	Affymetrix, Illumina [NR] (imputed)	N
714	chr2	16917968	16917969	rs73215707	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2p24.2	Intergenic	rs73215707-T	0.908	8E-6	(liability model)	0.12	[0.061-0.179] unit increase	NR [19725427] (imputed)	N
714	chr2	16963466	16963467	rs1035309	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	2p24.2	Intergenic	rs1035309-?		7E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
716	chr2	17197348	17197349	rs10165361	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p24.2	NR	rs10165361-?		8E-6				Illumina [4322238] (imputed)	N
716	chr2	17217074	17217075	rs10196592	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2p24.2	NR	rs10196592-?	NR	3E-6	(AA)	46.63	[43.42-49.84]	Illumina [905956]	N
716	chr2	17228515	17228516	rs115135226	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p24.2	NR	rs115135226-?	NR	1E-8				Illumina [7760689] (imputed)	N
716	chr2	17248572	17248573	rs7592574	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.2	RAD51AP2	rs7592574-?	NR	5E-6	(dimethylglycine)	0.1577824	[0.09-0.226] unit decrease	Affymetrix [at least 2500000] (imputed)	N
716	chr2	17270502	17270503	rs112696269	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.2	NR	rs112696269-A	0.01045	4E-9	(ACAA2)	4.782	NR unit increase	Illumina [1671387] (imputed)	N
717	chr2	17427584	17427585	rs11889338	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	2p24.2	intergenic	rs11889338-A	0.26	9E-6		1.55	[1.28-1.88]	Illumina [2505093] (imputed)	N
718	chr2	17476539	17476540	rs73219351	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.2	intergenic	rs73219351-T	0.6469	4E-9		0.0317	[0.021-0.042] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
718	chr2	17488779	17488780	rs6730144	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2p24.2	intergenic	rs6730144-?	NR	3E-6		0.156	[0.076-0.236] unit increase	Illumina [at least 13000000] (imputed)	N
719	chr2	17596689	17596690	rs35940501	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	2p24.2	NR	rs35940501-?	NR	1E-6		0.09743437	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
719	chr2	17609238	17609239	rs12185578	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	2p24.2		rs12185578-A	0.282	4E-6		1.5		Illumina [5411567] (imputed)	N
719	chr2	17609238	17609239	rs12185578	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p24.2	RAD51AP2	rs12185578-A	0.23	9E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
720	chr2	17746337	17746338	rs62131523	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	2p24.2	VSNL1	rs62131523-G	0.96	3E-8	(Men, Overweight/Obese)	124.0	[80-169] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
720	chr2	17766649	17766649	rs35397738	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p24.2	NR	rs35397738-TA	0.348047	2E-12		0.020412	[0.015-0.026] unit increase	Affymetrix [16580851] (imputed)	N
720	chr2	17769983	17769984	rs1519472	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	2p24.2		rs1519472-T	0.054	4E-6		0.084	[0.049-0.119] unit increase	Illumina [6361597] (imputed)	N
720	chr2	17775031	17775032	rs4038131	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	2p24.2	VSNL1	rs4038131-?	0.93	6E-7		1.5384616	[NR]	Illumina [1847262] (imputed)	N
720	chr2	17777723	17777724	rs2710691	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p24.2	Intergenic	rs2710691-T	0.6155	3E-9	(MTAG)	0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
720	chr2	17777723	17777724	rs2710691	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p24.2	Intergenic	rs2710691-C	0.3845	9E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
720	chr2	17778083	17778084	rs2680830	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2p24.2	VSNL1	rs2680830-?	NR	8E-8		0.176	[0.12-0.24] unit decrease	Illumina [at least 13000000] (imputed)	N
720	chr2	17784156	17784157	rs13031455	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	2p24.2	VSNL1	rs13031455-T	0.595234799	2E-6		1.0940219	[1.05-1.14]	Illumina [10439017] (imputed)	N
721	chr2	17890087	17890087	rs201445483	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.2	SMC6	rs201445483-?	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
721	chr2	17890087	17890087	rs201445483	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.2	SMC6	rs201445483-?	NR	5E-9				Affymetrix, Illumina [NR] (imputed)	N
721	chr2	17890087	17890087	rs201445483	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.2	SMC6	rs201445483-?	NR	4E-8		2.114	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
721	chr2	17912810	17912811	rs79673034	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.2	NR	rs79673034-C	0.01045	2E-8	(SDS)	0.09028	NR unit increase	Illumina [1671387] (imputed)	N
721	chr2	17930194	17930195	rs6761104	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.2	SMC6	rs6761104-A	0.2063	1E-8		0.0194	[0.013-0.026] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
722	chr2	17988657	17988658	rs214034	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2p24.2	intergenic	rs214034-?	NR	7E-6	(SF2)			Affymetrix [5476100] (imputed)	N
722	chr2	18002539	18002540	rs75349084	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPSS1	5,354 Icelandic ancestry individuals	NA	2p24.2		rs75349084-A	0.0137	5E-12		0.157136	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
722	chr2	18037806	18037807	rs11680328	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p24.2	NR	rs11680328-T	NR	1E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
722	chr2	18038679	18038680	rs11898180	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.2	MSGN1	rs11898180-?	NR	9E-6	(beta hydroxybutyric acid)	0.19967386	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
722	chr2	18039507	18039508	rs898838	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	2p24.2	MSGN1, KCNS3	rs898838-?		8E-6		0.74	[0.65-0.85]	Illumina [540021]	N
722	chr2	18039507	18039508	rs898838	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	2p24.2	Intergenic	rs898838-C		5E-6		0.028	[0.016-0.041] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
723	chr2	18105938	18105938	rs201143375	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	2p24.2	NR	rs201143375-?	NR	6E-7		0.2078	[0.13-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
723	chr2	18114931	18114932	rs1031771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p24.2		rs1031771-?	NR	2E-9				NR [~ 8900000] (imputed)	N
723	chr2	18125714	18125715	rs1531427	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.2	MSGN1	rs1531427-?	NR	2E-6	(arginine)	0.34849447	[0.2-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
723	chr2	18127145	18127146	rs6710545	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.2	NR	rs6710545-C	0.01394	2E-8	(SDS)	0.07854	NR unit increase	Illumina [1671387] (imputed)	N
723	chr2	18147847	18147848	rs76116224	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2p24.2	KCNS3	rs76116224-A	0.9042	1E-8		0.1104	[0.072-0.148] unit increase	NR [7784415] (imputed)	N
723	chr2	18206412	18206413	rs11886084	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.2	NR	rs11886084-?	NR	4E-6				Affymetrix [NR]	N
724	chr2	18234445	18234446	rs16984239	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	2p24.2	intergenic	rs16984239-?	NR	2E-6		2.1	[1.50-3.00]	Illumina [549062]	N
724	chr2	18243533	18243534	rs4075511	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	2p24.2	intergenic	rs4075511-?	NR	3E-6	(Irritable)	0.93	[NR] unit decrease	Affymetrix [703012]	N
724	chr2	18247776	18247777	rs6747970	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2p24.2	NR	rs6747970-A	0.493109	6E-6		1.065	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
724	chr2	18256918	18256919	rs13015992	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	2p24.2	KCNS3, RDH14	rs13015992-G	0.3735	4E-6	(BMI)	0.01489	NR unit increase	Affymetrix [305158]	N
724	chr2	18286650	18286651	rs6729954	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2p24.2	NR	rs6729954-T	0.43476800000000004	3E-10		0.0189552	[0.013-0.025] unit increase	Affymetrix [16577424] (imputed)	N
724	chr2	18287518	18287519	rs12467348	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		2p24.2	intergenic	rs12467348-?	NR	9E-6		2.05	[NR]	Illumina [up to 810372] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2p24.2	KCNS3	rs55884799-T	0.8271	5E-12		0.0229	[0.016-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	KCNS3	rs55884799-T	0.8271	2E-7		0.016	[0.0099-0.0221] unit decrease	Affymetrix [19819130] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	KCNS3	rs55884799-T	0.8271	4E-40		0.0415	[0.035-0.048] unit decrease	Affymetrix [19819130] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	KCNS3	rs55884799-T	0.8271	4E-26		0.0325	[0.026-0.039] unit decrease	Affymetrix [19819130] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p24.2		rs55884799-?	NR	7E-14				NR [~ 8900000] (imputed)	N
724	chr2	18287622	18287623	rs55884799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p24.2		rs55884799-?	NR	7E-51				NR [~ 8900000] (imputed)	N
724	chr2	18292451	18292452	rs61067109	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	2p24.2	KCNS3, NT5C1B-RDH14	rs61067109-G	NR	1E-15	(adults)	0.045	[0.033-0.057] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
724	chr2	18292451	18292452	rs61067109	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	2p24.2	KCNS3, NT5C1B-RDH14	rs61067109-G	NR	3E-11	(adults)	0.037	[0.025-0.049] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
724	chr2	18309131	18309132	rs62126408	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	2p24.2	KCNS3	rs62126408-C	0.1411	8E-9		0.055	[0.035-0.075] unit increase	Affymetrix [27624732] (imputed)	N
724	chr2	18309131	18309132	rs62126408	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	2p24.2	KCNS3	rs62126408-C	0.14	7E-8		0.052	[0.032-0.072] unit increase	Affymetrix [up to 27624732] (imputed)	N
724	chr2	18315342	18315343	rs575992146	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KCNS3	rs575992146-?	NR	4E-12		1.59684	[NR] unit decrease	Affymetrix [NR] (imputed)	N
725	chr2	18360203	18360204	rs75579810	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	2p24.2	NR	rs75579810-?		7E-6		2.21	[1.56-3.12]	Illumina [539473] (imputed)	N
725	chr2	18371879	18371880	rs4832551	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p24.2	NR	rs4832551-?	NR	1E-6		2.2	[2.04-2.37]	Illumina [539000] (imputed)	N
725	chr2	18374437	18374438	rs75157307	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2p24.2		rs75157307-?	NR	3E-6	(serous_hg)	1.27		Illumina [11595112] (imputed)	N
725	chr2	18381338	18381339	rs190283338	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	2p24.2		rs190283338-A	0.01081	3E-7		3.946	[2.33-6.682]	Affymetrix [7975321] (imputed)	N
725	chr2	18381338	18381339	rs190283338	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	2p24.2		rs190283338-A	0.01081	6E-7		3.504	[2.14-5.736]	Affymetrix [7975321] (imputed)	N
725	chr2	18386053	18386054	rs111366249	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	2p24.2	KCNS3	rs111366249-A	0.012	4E-12		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
725	chr2	18387046	18387047	rs1452426	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KCNS3	rs1452426-?	NR	5E-10	(female)	1.8718	[NR] unit decrease	Affymetrix [NR] (imputed)	N
725	chr2	18409513	18409514	rs144159691	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	2p24.2	NR	rs144159691-T	NR	1E-5		0.3982	NR	Illumina [at least 560000] (imputed)	N
725	chr2	18413062	18413063	rs186173111	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p24.2	Intergenic	rs186173111-T	NR	5E-6		0.367983	[0.21-0.53] unit decrease	Illumina [13519193] (imputed)	N
725	chr2	18445473	18445474	rs16984571	29973135	Rimpela JM	2018-07-04	BMC Med Genet	Genome-wide association study of nocturnal blood pressure dipping in hypertensive patients.	Systolic blood pressure night-to-day ratio in hypertension	204 Finnish ancestry individuals	NA	2p24.2	KCNS3	rs16984571-G	0.15	6E-6		2.7	percent decrease	Illumina [631844]	N
725	chr2	18465889	18465890	rs6726057	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	2p24.2	NR	rs6726057-G		6E-6		0.1653	[0.094-0.237] SD units decrease	NR [10700000] (imputed)	N
726	chr2	18489855	18489856	rs75282989	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p24.2	NR	rs75282989-A	0.0134	3E-6	(EA)	0.1716	[0.1-0.24] unit decrease	Illumina [~ 11800000] (imputed)	N
726	chr2	18494454	18494455	rs10495672	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	2p24.2	KCNS3	rs10495672-?		3E-6		1.433	[NR]	Affymetrix [492217] (imputed)	N
726	chr2	18494454	18494455	rs10495672	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p24.2	KCNS3	rs10495672-?	NR	1E-6		1.459854	[NR]	Affymetrix [492217] (imputed)	N
726	chr2	18509253	18509254	rs16984718	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	2p24.2	KCNS3, RDH14	rs16984718-G	0.98	2E-6		0.246	[0.14-0.35] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
726	chr2	18533457	18533458	rs1489696	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	2p24.2		rs1489696-?	NR	7E-6				Illumina [3311160] (imputed)	N
726	chr2	18540643	18540644	rs7580332	18084291	van Es MA	2007-12-16	Nat Genet	Genetic variation in DPP6 is associated with susceptibility to amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	737 European ancestry cases, 721 European ancestry controls	1,030 European ancestry cases, 1,195 European ancestry controls	2p24.2	intergenic	rs7580332-?	0.45	9E-6		1.22	[1.09-1.35]	Illumina [311946]	N
726	chr2	18570023	18570024	rs6751968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2p24.2	RDH14	rs6751968-A	0.1787	9E-13		0.0236	[0.017-0.03] unit increase	Affymetrix [19819130] (imputed)	N
726	chr2	18570023	18570024	rs6751968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	RDH14	rs6751968-A	0.1787	1E-16		0.0252	[0.019-0.031] unit increase	Affymetrix [19819130] (imputed)	N
726	chr2	18570023	18570024	rs6751968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	RDH14	rs6751968-A	0.1787	1E-17		0.0258	[0.02-0.032] unit increase	Affymetrix [19819130] (imputed)	N
726	chr2	18577857	18577858	rs35814619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p24.2		rs35814619-?	NR	3E-12				NR [~ 8900000] (imputed)	N
726	chr2	18594508	18594509	rs7558670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p24.2		rs7558670-?	NR	3E-15				NR [~ 8900000] (imputed)	N
726	chr2	18598636	18598643	rs113696867	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p24.2	KCNS3	rs113696867-A	0.1764	5E-7		0.0549	[0.034-0.076] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
726	chr2	18598636	18598643	rs113696867	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p24.2	KCNS3	rs113696867-A	0.1775	3E-6		0.0396	[0.023-0.056] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
726	chr2	18600276	18600277	rs28819846	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p24.2	KCNS3, RDH14	rs28819846-?	NR	6E-10		0.018553436	[0.013-0.024] unit decrease	Illumina [27896057] (imputed)	N
727	chr2	18632584	18632585	rs6718130	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2p24.2	NT5C1B, KCNS3	rs6718130-?	NR	8E-8	(EA)	9.1	[5.77-12.43] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
727	chr2	18676202	18676203	rs4293567	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2p24.2		rs4293567-G	0.683793	2E-9		0.0227724	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
727	chr2	18676264	18676265	rs4567937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p24.2		rs4567937-A	NR	1E-24		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
727	chr2	18676264	18676265	rs4567937	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p24.2	RDH14	rs4567937-A	0.316	4E-25		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
727	chr2	18676275	18676276	rs4491726	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p24.2	RDH14	rs4491726-A	0.6934	1E-25		0.0032	[0.0024-0.004] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
727	chr2	18677221	18677222	rs12105304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p24.2		rs12105304-G	NR	8E-22		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
727	chr2	18677221	18677222	rs12105304	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p24.2	NR	rs12105304-A	0.68	2E-25		0.0202	[0.016-0.024] unit decrease	NR [NR]	N
727	chr2	18678670	18678671	rs10179584	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p24.2	NT5C1B-RDH14	rs10179584-T	0.6558	5E-15	(EA)	0.0028	[0.002-0.0036] unit increase	Affymetrix [NR] (imputed)	N
727	chr2	18679585	18679586	rs10856778	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p24.2	LOC105373454	rs10856778-G	0.8311	1E-9		6.103	NR z score increase	Illumina [26237160] (imputed)	N
727	chr2	18681329	18681330	rs13393068	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p24.2	NT5C1B-RDH14	rs13393068-T	0.351	5E-11		0.359	[0.25-0.47] unit decrease	Affymetrix [NR] (imputed)	N
727	chr2	18681329	18681330	rs13393068	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p24.2	NT5C1B, RDH14	rs13393068-T	0.334	4E-13		0.0028	[0.002-0.0036] unit decrease	Affymetrix [NR] (imputed)	N
727	chr2	18681364	18681365	rs13417750	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p24.2	NT5C1B, RDH14	rs13417750-A	0.189	1E-8		0.439	[0.23-0.65] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
727	chr2	18686649	18686650	rs10856780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p24.2	NR	rs10856780-C	NR	3E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
727	chr2	18686649	18686650	rs10856780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p24.2	NR	rs10856780-C	NR	8E-15		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
727	chr2	18686649	18686650	rs10856780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p24.2	NR	rs10856780-C	NR	1E-22		0.024	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
727	chr2	18686649	18686650	rs10856780	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p24.2	NR	rs10856780-C	NR	2E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
727	chr2	18701626	18701627	rs4637120	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p24.2		rs4637120-T	0.37	2E-84		19.47	z score increase	Affymetrix [9061022] (imputed)	N
727	chr2	18701626	18701627	rs4637120	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p24.2		rs4637120-T	0.37	2E-23		10.0	z score increase	Affymetrix [9061022] (imputed)	N
727	chr2	18701626	18701627	rs4637120	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p24.2	NR	rs4637120-T	0.3587	2E-12				NR [9056863] (imputed)	N
727	chr2	18701626	18701627	rs4637120	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p24.2	NR	rs4637120-T	0.3587	1E-17				NR [9056863] (imputed)	N
727	chr2	18701626	18701627	rs4637120	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p24.2		rs4637120-?	NR	6E-18				NR [9705931] (imputed)	N
727	chr2	18702312	18702313	rs13430465	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	RDH14	rs13430465-T	0.0803	2E-17		0.0368	[0.028-0.045] unit increase	Affymetrix [19819130] (imputed)	N
727	chr2	18702312	18702313	rs13430465	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.2	RDH14	rs13430465-T	0.0803	3E-17		0.0363	[0.028-0.045] unit increase	Affymetrix [19819130] (imputed)	N
727	chr2	18707872	18707873	rs11096542	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p24.2	NR	rs11096542-G	0.3756	3E-9		0.0254	[0.017-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
727	chr2	18707872	18707873	rs11096542	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p24.2	NR	rs11096542-G	0.406615	5E-11		0.00526056	[0.0036-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
727	chr2	18721661	18721662	rs7558413	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p24.2		rs7558413-G	0.421927657	1E-10				Illumina [7417619] (imputed)	N
727	chr2	18721661	18721662	rs7558413	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p24.2	NR	rs7558413-G	0.4305	6E-10		0.0286	[0.02-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
727	chr2	18722423	18722424	rs4832605	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p24.2		rs4832605-T	0.43	7E-14		7.49	z score increase	Affymetrix [9061022] (imputed)	N
727	chr2	18722423	18722424	rs4832605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p24.2	RDH14, NT5C1B-RDH14, NT5C1B	rs4832605-?		2E-10				NR [7428630] (imputed)	N
727	chr2	18728275	18728276	rs2346133	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p24.2		rs2346133-?	NR	2E-18				NR [~ 8900000] (imputed)	N
727	chr2	18735163	18735164	rs16985284	32958699	Innocenti F	2020-09-21	Clin Cancer Res	Genomic analysis of germline variation associated with survival of colorectal cancer patients treated with chemotherapy plus biologics in CALGB/SWOG 80405 (Alliance).	Metastatic colorectal cancer survival in treatment with chemotherapy plus biologics	613 European ancestry individuals	NA	2p24.2	KCNS3, RDH14	rs16985284-?		5E-6		1.56	[1.29-1.89]	Illumina [540021]	N
727	chr2	18738241	18738242	rs78038889	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RDH14	rs78038889-?	NR	1E-9	(male)	3.81682	[NR] unit increase	Affymetrix [NR] (imputed)	N
728	chr2	18834650	18834651	rs1445130	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	2p24.2	NT5C1B	rs1445130-A	0.864	1E-7		0.056	[0.036-0.076] unit decrease	Illumina [6150213] (imputed)	N
728	chr2	18868187	18868188	rs4614937	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.2	RDH14	rs4614937-?	NR	4E-6	(cyclic adenosine monophosphate)	0.20462869	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
729	chr2	18878094	18878095	rs4525697	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	2p24.2	NR	rs4525697-?	NR	6E-6		1.078501	[1.04-1.11]	Affymetrix, Illumina [~ 10400000] (imputed)	N
729	chr2	18937028	18937029	rs188585450	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	2p24.2		rs188585450-A	0.01465	6E-6		2.642	[1.733-4.026]	Affymetrix [7975321] (imputed)	N
729	chr2	18950101	18950102	rs139255058	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	2p24.2	NT5C1B-RDH14, MIR4757	rs139255058-G	0.0046	5E-7		0.2894	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
729	chr2	18965022	18965023	rs62125344	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	2p24.2		rs62125344-C	0.01755	1E-6		2.937	[1.906-4.524]	Affymetrix [7975321] (imputed)	N
729	chr2	18975438	18975439	rs67720684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p24.2		rs67720684-?	NR	4E-11				NR [~ 8900000] (imputed)	N
729	chr2	18975438	18975439	rs67720684	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p24.2	NT5C1B	rs67720684-A	0.239	2E-12		0.2039	[0.15-0.26] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
729	chr2	18988239	18988240	rs62126581	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p24.2	NT5C1B	rs62126581-A	0.170302907496935	4E-8		0.003927	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
730	chr2	19016461	19016462	rs2005255	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Aneurinibacillales abundance in stool	5,959 Finnish ancestry individuals	NA	2p24.2		rs2005255-G	0.0455161	6E-9		0.0587374	[0.039-0.078] unit decrease	Illumina [7980478] (imputed)	N
730	chr2	19016461	19016462	rs2005255	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Aneurinibacillaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2p24.2		rs2005255-G	0.0455161	1E-8		0.0614355	[0.04-0.083] unit decrease	Illumina [7980478] (imputed)	N
730	chr2	19095627	19095628	rs12328258	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p24.2	LINC01376	rs12328258-C	0.08313	7E-6				Illumina [4404269] (imputed)	N
730	chr2	19102920	19102920	rs147801202	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	2p24.2	NR	rs147801202-A	NR	3E-7		1.049	unit decrease	NR [9015039] (imputed)	N
730	chr2	19103207	19103208	rs4290655	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p24.2	NR	rs4290655-?	NR	8E-7		0.0527	[0.032-0.074] unit increase	Illumina [at least 560000] (imputed)	N
730	chr2	19134747	19134748	rs1876040	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	2p24.2	AC092594.1	rs1876040-?	NR	6E-8	(Digit Span Backward)			Illumina [up to 563855]	N
731	chr2	19184880	19184881	rs884894	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p24.1	NR	rs884894-?	NR	3E-8	(right lateral ventricle)			NR [9227495] (imputed)	N
731	chr2	19187218	19187219	rs72780760	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2p24.1	NR	rs72780760-?		1E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
731	chr2	19187218	19187219	rs72780760	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2p24.1	NR	rs72780760-?		3E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
731	chr2	19187218	19187219	rs72780760	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2p24.1	NR	rs72780760-?		4E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
731	chr2	19231503	19231504	rs17705304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	2p24.1		rs17705304-C	NR	3E-11		0.2029	[0.14-0.26] unit increase	Affymetrix, Illumina [25752093] (imputed)	N
731	chr2	19238635	19238636	rs62124990	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	2p24.1	NR	rs62124990-G		3E-6		0.6961	[0.4-0.99] SD units increase	NR [10700000] (imputed)	N
732	chr2	19274784	19274785	rs5829676	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p24.1	NT5C1B-RDH14, OSR1	rs5829676-?	0.4	2E-10		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
732	chr2	19274784	19274785	rs5829676	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p24.1	OSR1, NT5C1B, RDH14	rs5829676-?	NR	2E-10		1.0582011	[1.04-1.08]	Illumina [13754664] (imputed)	N
732	chr2	19277787	19277788	rs6715010	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 22)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p24.1		rs6715010-T	0.468365364	1E-14				Illumina [7417619] (imputed)	N
732	chr2	19310151	19310152	rs746640808	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p24.1	NR	rs746640808-?	NR	5E-6		4.553	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
732	chr2	19310917	19310918	rs11684853	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	2p24.1		rs11684853-?	NR	3E-8		0.049	[0.031-0.067] unit increase	Affymetrix [9906178] (imputed)	N
732	chr2	19310917	19310918	rs11684853	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p24.1	NR	rs11684853-T	0.5606	1E-12	(EA)	0.0442	[0.032-0.056] unit decrease	Illumina [~ 11800000] (imputed)	N
732	chr2	19320802	19320803	rs12710696	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2p24.1		rs12710696-T	NR	6E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
732	chr2	19320802	19320803	rs12710696	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p24.1	intergenic	rs12710696-T	0.37	1E-8	(EA)	1.03	[1.01-1.04] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
732	chr2	19320802	19320803	rs12710696	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2p24.1	MIR4757	rs12710696-T	0.37	7E-8		1.06	[1.04-1.09]	Illumina [~ 11500000] (imputed)	N
732	chr2	19320802	19320803	rs12710696	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2p24.1	Intergenic	rs12710696-?	0.36	2E-8		1.1	[1.06-1.13]	Illumina [10909381] (imputed)	N
732	chr2	19320802	19320803	rs12710696	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	2p24.1	Intergenic	rs12710696-?	0.39	2E-6		1.01	[0.97-1.05] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
732	chr2	19320802	19320803	rs12710696	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2p24.1	NR	rs12710696-T	0.36	4E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
732	chr2	19320802	19320803	rs12710696	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	2p24.1	intergenic	rs12710696-?	0.36	5E-8		1.1	[1.06-1.13]	Illumina [NR]	N
732	chr2	19338690	19338691	rs4666465	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	2p24.1	NT5C1B, MIR4757	rs4666465-C	0.64	1E-9		0.0055	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
732	chr2	19338690	19338691	rs4666465	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2p24.1	NT5C1B, MIR4757	rs4666465-C	0.64	3E-6		0.0043	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
732	chr2	19343627	19343628	rs10175066	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p24.1		rs10175066-C	0.22	6E-34		12.14	z score increase	Affymetrix [9061022] (imputed)	N
732	chr2	19344097	19344098	rs72784719	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p24.1	MIR4757	rs72784719-A	0.99	1E-11		0.06	unit increase	Affymetrix [8928767] (imputed)	N
732	chr2	19344879	19344880	rs11686013	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p24.1		rs11686013-A	0.26	3E-9		5.92	z score increase	Affymetrix [9061022] (imputed)	N
732	chr2	19344879	19344880	rs11686013	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p24.1	NR	rs11686013-A	0.2601	4E-12				NR [9056863] (imputed)	N
732	chr2	19383018	19383019	rs10171927	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p24.1	NR	rs10171927-G	0.3775	3E-8				NR [9056863] (imputed)	N
733	chr2	19412638	19412639	rs10169133	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p24.1	NR	rs10169133-C	0.6206	1E-8	(EA)	0.0364	[0.024-0.049] unit decrease	Illumina [~ 11800000] (imputed)	N
733	chr2	19420059	19420060	rs851321	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	2p24.1	NT5C1B, MIR4757	rs851321-C	0.01	8E-9		0.02	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
733	chr2	19420059	19420060	rs851321	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2p24.1	NT5C1B, MIR4757	rs851321-C	0.01	3E-6		0.02	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
733	chr2	19420315	19420316	rs851320	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p24.1	MIR4757	rs851320-G	0.221743	6E-9		0.0128713	[0.0085-0.0172] unit decrease	NR [13737936] (imputed)	N
733	chr2	19430104	19430105	rs79748197	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	White blood cell count	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	2p24.1	AC092594.1	rs79748197-G	0.008	3E-8		1.156	[0.75-1.57] unit decrease	Illumina [at least 13541454] (imputed)	N
733	chr2	19441251	19441252	rs34331777	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	2p24.1		rs34331777-?	NR	5E-9		0.042	[0.028-0.056] unit increase	Affymetrix [9906178] (imputed)	N
733	chr2	19463476	19463477	rs79710760	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2p24.1		rs79710760-G	0.10081775	6E-6		0.020288356	[0.012-0.029] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
733	chr2	19468506	19468507	rs67969689	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2p24.1	NR	rs67969689-?	NR	5E-7		0.1312	[0.08-0.182] unit decrease	Illumina [at least 560000] (imputed)	N
733	chr2	19503014	19503015	rs79037251	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 24)	3,566 European ancestry individuals	4,680 European ancestry individuals	2p24.1		rs79037251-T	0.147108844	9E-11				Illumina [7417619] (imputed)	N
734	chr2	19536251	19536252	rs6749770	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p24.1	TTC32	rs6749770-?	NR	7E-6	(adenosine)	0.2072036	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
734	chr2	19545088	19545089	rs55878177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p24.1		rs55878177-C	NR	5E-10		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
734	chr2	19598280	19598281	rs78557705	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	2p24.1	NR	rs78557705-C	NR	4E-6		0.048044313	[0.028-0.069] unit increase	Illumina [NR] (imputed)	N
734	chr2	19625115	19625116	rs13387360	32804141	Wang RZ	2020-08-10	J Alzheimers Dis	Genome-Wide Association Study of Brain Alzheimer's Disease-Related Metabolic Decline as Measured by [18F] FDG-PET Imaging.	Cerebral glucose metabolic decline (left angular gyrus)	67 European ancestry Alzheimer's disease cases, 323 European ancestry mild cognitive impairment cases, 196 European ancestry individuals with normal cognition	NA	2p24.1		rs13387360-T	NR	2E-8		0.027	unit decrease	Illumina [278989]	N
734	chr2	19629303	19629304	rs13398721	23478653	Han JY	2013-03-12	Pharmacogenomics J	A genome-wide association study of survival in small-cell lung cancer patients treated with irinotecan plus cisplatin chemotherapy.	Response to irinotecan and platinum-based chemotherapy in non-small-cell lung cancer	139 individuals	NA	2p24.1	intergenic	rs13398721-?	NR	2E-7	(Recessive model)	7.1	[3.40-14.70]	Affymetrix [334127]	N
734	chr2	19646647	19646648	rs6713895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs6713895-?	NR	5E-12				NR [~ 8900000] (imputed)	N
735	chr2	19686396	19686397	rs16986508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p24.1		rs16986508-?	NR	1E-8				NR [~ 8900000] (imputed)	N
735	chr2	19694525	19694526	rs13383201	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2p24.1	OSR1, LINC00954	rs13383201-?	NR	7E-7		0.0669764	[0.041-0.093] unit decrease	Illumina [19707525] (imputed)	N
735	chr2	19699610	19699611	rs1718641	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Oxcarbazepine-induced hyponatremia in epilepsy	170 European ancestry cases, 127 European ancestry controls	NA	2p24.1	NR	rs1718641-?		6E-6		2.5	[1.69-3.70]	Illumina [NR]	N
735	chr2	19708691	19708692	rs10176996	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p24.1	intergenic	rs10176996-C	0.5928	3E-18		0.2275	[0.18-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
735	chr2	19711072	19711073	rs116595383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p24.1		rs116595383-A	NR	1E-35		0.0271	[0.023-0.031] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
735	chr2	19720804	19720805	rs77242430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p24.1	AC010096.2	rs77242430-C	0.9658	3E-6		0.1129	[0.065-0.161] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
735	chr2	19720804	19720805	rs77242430	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p24.1	AC010096.2	rs77242430-C	0.9684	6E-6		0.0894	[0.051-0.128] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
735	chr2	19723366	19723367	rs4456662	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	2p24.1		rs4456662-C	0.322053	1E-33		0.0853785	[0.071-0.1] increase	Affymetrix [NR]	N
735	chr2	19723366	19723367	rs4456662	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	2p24.1		rs4456662-C	0.321285	4E-30		0.0877053	[0.072-0.103] increase	Affymetrix [NR]	N
735	chr2	19723612	19723613	rs10174214	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p24.1	intergenic	rs10174214-A	0.3249	8E-28		0.2836	[0.23-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
735	chr2	19729794	19729795	rs17759661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p24.1		rs17759661-A	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
735	chr2	19730844	19730845	rs1344653	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p24.1	OSR1	rs1344653-G	0.504	1E-6	(EA, initial)	0.224	[0.13-0.31] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
735	chr2	19730844	19730845	rs1344653	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p24.1	OSR1, FLJ12334	rs1344653-A		8E-9		0.219	unit decrease	Affymetrix [at least 2696785] (imputed)	N
735	chr2	19730844	19730845	rs1344653	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p24.1	OSR1, FLJ12334	rs1344653-A		7E-6		0.163	unit decrease	Affymetrix [at least 2696785] (imputed)	N
735	chr2	19730844	19730845	rs1344653	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p24.1	OSR1, FLJ12334	rs1344653-A		5E-24		0.256	unit decrease	Affymetrix [at least 2696785] (imputed)	N
735	chr2	19730844	19730845	rs1344653	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2p24.1	OSR1	rs1344653-A	0.530994775663925	8E-12		0.26579088	[0.19-0.34] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
735	chr2	19732290	19732291	rs7567283	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2p24.1	OSR1, WDR35	rs7567283-G	0.24	7E-8	(Left facial angle of en-ex-go)	0.525	[NR] unit decrease	Affymetrix [311944]	N
735	chr2	19732290	19732291	rs7567283	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2p24.1	OSR1, WDR35	rs7567283-G	0.24	3E-8	(Right facial angle of en-ex-go)	0.536	[NR] unit decrease	Affymetrix [311944]	N
735	chr2	19737298	19737299	rs4531890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p24.1		rs4531890-?	NR	4E-21				NR [~ 8900000] (imputed)	N
735	chr2	19739009	19739010	rs3914966	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	2p24.1	NR	rs3914966-T	0.4256	5E-6		34.0	[-48--19] unit decrease	NR [9714326] (imputed)	N
735	chr2	19773419	19773420	rs1427539	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p24.1		rs1427539-C	0.346867225	2E-9				Illumina [7417619] (imputed)	N
735	chr2	19781161	19781162	rs10856789	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p24.1	NR	rs10856789-?	NR	1E-7	(Native Hawaiian)	1.1678	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
736	chr2	19808098	19808099	rs4145607	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p24.1	NR	rs4145607-?		4E-6	(VCAM1)	0.2416	[NR] unit decrease	Illumina [NR]	N
736	chr2	19846103	19846104	rs17618762	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	2p24.1		rs17618762-?	NR	3E-7		0.09	[0.057-0.123] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
736	chr2	19846103	19846104	rs17618762	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	2p24.1		rs17618762-?	NR	2E-6		0.09	[0.055-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
736	chr2	19870340	19870341	rs4666343	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p24.1	LINC00954	rs4666343-C	0.73083	6E-14		0.0155207	[0.011-0.02] unit increase	NR [13737936] (imputed)	N
736	chr2	19870340	19870341	rs4666343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p24.1		rs4666343-?	NR	2E-14				NR [~ 8900000] (imputed)	N
736	chr2	19870340	19870341	rs4666343	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p24.1		rs4666343-?	NR	6E-15		0.0182931	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
736	chr2	19918335	19918336	rs72775105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	2p24.1		rs72775105-T	0.376985145	2E-8		0.06956494	[0.045-0.094] unit increase	Illumina [13429980] (imputed)	N
737	chr2	19942472	19942473	rs16986953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs16986953-A	NR	2E-13		0.0878	[0.064-0.111] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
737	chr2	19942472	19942473	rs16986953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs16986953-A	0.389107451	1E-8		0.0804001	[0.053-0.108] unit increase	Illumina [13427135] (imputed)	N
737	chr2	19942472	19942473	rs16986953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	2p24.1		rs16986953-A	NR	1E-10		0.0769	[0.053-0.1] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
737	chr2	19942472	19942473	rs16986953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2p24.1		rs16986953-A	NR	6E-10		0.0694	[0.047-0.091] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
737	chr2	19942472	19942473	rs16986953	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p24.1	TTC32	rs16986953-A	0.083917	4E-11		1.09	[1.06-1.12]	NR [8126035] (imputed)	N
737	chr2	19942472	19942473	rs16986953	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p24.1	OSR1, LINC00954	rs16986953-?	NR	7E-29		0.0796215	[0.066-0.094] unit increase	Illumina [4804024] (imputed)	N
737	chr2	19942472	19942473	rs16986953	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2p24.1	OSR1, LINC00954	rs16986953-?	NR	2E-14		0.077836	[0.058-0.098] unit increase	Illumina [19707525] (imputed)	N
737	chr2	19942472	19942473	rs16986953	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2p24.1	OSR1, TTC32	rs16986953-A	0.13	1E-13		1.1	[1.09-1.12]	Illumina [5167567] (imputed)	N
737	chr2	19942472	19942473	rs16986953	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	2p24.1	OSR1, LINC00954	rs16986953-A	0.068	1E-8				Affymetrix [28000000] (imputed)	N
737	chr2	19942472	19942473	rs16986953	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2p24.1	intergenic	rs16986953-A	0.1095	1E-16		0.0812	[0.062-0.1] unit increase	Affymetrix [at least 7947838] (imputed)	N
737	chr2	19942472	19942473	rs16986953	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p24.1	intergenic	rs16986953-A	0.1162	1E-15		0.0855	[0.065-0.106] unit increase	NR [8041861] (imputed)	N
737	chr2	19942472	19942473	rs16986953	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p24.1	intergenic	rs16986953-A	0.116	1E-15		0.086	[0.064-0.108] unit increase	Affymetrix [7947838] (imputed)	N
737	chr2	19942472	19942473	rs16986953	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2p24.1	AK097927	rs16986953-A	0.073	5E-10		1.11	[1.07-1.15]	Affymetrix [9149595] (imputed)	N
737	chr2	19942472	19942473	rs16986953	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2p24.1	AK097927	rs16986953-A	0.09	2E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [8600000] (imputed)	N
737	chr2	19942472	19942473	rs16986953	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2p24.1	AK097927	rs16986953-A	0.104706	1E-8		1.09	[1.06- 1.12]	Affymetrix, Illumina [8600000] (imputed)	N
737	chr2	19943631	19943632	rs35058456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs35058456-G	NR	1E-10		0.056	[0.039-0.073] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
737	chr2	19945576	19945577	rs2123536	22751097	Lu X	2012-07-01	Nat Genet	Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease.	Coronary heart disease	1,515 Han Chinese ancestry cases, 5,019 Han Chinese ancestry controls	15,460 Han Chinese ancestry cases, 11,472 Han Chinese ancestry controls	2p24.1	TTC32, WDR35	rs2123536-T	0.39	7E-11		1.12	[1.08-1.16]	Affymetrix [~ 2200000] (imputed)	N
737	chr2	19958495	19958496	rs17564315	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	2p24.1	intergenic	rs17564315-?	NR	7E-7	(MCP1-TNF-a pattern prefenofibrate)			Affymetrix [2543887] (imputed)	N
737	chr2	19961395	19961396	rs7559121	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	2p24.1		rs7559121-T	0.39	7E-8		0.54	[0.34-0.74] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
737	chr2	19995469	19995470	rs12467812	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	2p24.1	OSR1, TTC32	rs12467812-?	NR	3E-17		0.033	[0.025-0.040] unit increase	Illumina [12039491] (imputed)	N
737	chr2	19999345	19999346	rs6728440	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	2p24.1	intergenic	rs6728440-?	NR	2E-7	(hsCRP-IL6 pattern postfenofibrate)			Affymetrix [2543887] (imputed)	N
737	chr2	20036710	20036711	rs11683203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs11683203-?	NR	5E-10				NR [~ 8900000] (imputed)	N
738	chr2	20081741	20081742	rs7590829	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p24.1		rs7590829-G	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
738	chr2	20143830	20143831	rs113386058	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p24.1	WDR35	rs113386058-T	NR	3E-8		0.0515977	[0.033-0.07] unit decrease	Affymetrix [321114] (imputed)	N
738	chr2	20143830	20143831	rs113386058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p24.1	NR	rs113386058-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
738	chr2	20143830	20143831	rs113386058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p24.1	NR	rs113386058-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
738	chr2	20143830	20143831	rs113386058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p24.1		rs113386058-?	NR	1E-9				NR [~ 8900000] (imputed)	N
739	chr2	20189088	20189089	rs3731663	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2p24.1	WDR35	rs3731663-C	0.5163	7E-18	(MATN3)	0.42459	[0.33-0.52] unit increase	Illumina [8683751] (imputed)	N
739	chr2	20205540	20205541	rs52826764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p24.1		rs52826764-T	NR	6E-35		0.06	[0.05-0.07] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
739	chr2	20205540	20205541	rs52826764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p24.1	MATN3	rs52826764-T	NR	4E-8		0.0454502	[0.029-0.062] unit decrease	Affymetrix [319769] (imputed)	N
739	chr2	20205540	20205541	rs52826764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p24.1	MATN3	rs52826764-T	NR	8E-11		0.0543266	[0.038-0.071] unit decrease	Affymetrix [321114] (imputed)	N
739	chr2	20205540	20205541	rs52826764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs52826764-?	NR	7E-54				NR [~ 8900000] (imputed)	N
739	chr2	20238271	20238272	rs1147118	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2p24.1	LAPTM4A	rs1147118-A	0.2685	3E-22	(MATN3)	0.56832	[0.45-0.68] unit decrease	Illumina [8683751] (imputed)	N
739	chr2	20261684	20261685	rs7565124	21621269	Aragam N	2011-05-26	J Affect Disord	Genome-wide association analysis of gender differences in major depressive disorder in the Netherlands NESDA and NTR population-based samples.	Major depressive disorder	1,726 cases, 1,630 controls	NA	2p24.1	LAPTM4A	rs7565124-?		2E-6				Perlegen [433556]	N
739	chr2	20312437	20312438	rs7578149	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsessive compulsive disorder severity	376 Spanish ancestry individuals	NA	2p24.1	RPS16P2	rs7578149-?	NR	2E-6		1.917254	NR unit increase	Illumina [338357]	N
740	chr2	20334722	20334723	rs6531209	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2p24.1	SDC1	rs6531209-?		3E-6				Illumina [859311]	N
740	chr2	20335708	20335709	rs4666360	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)	218 Japanese ancestry cases, 364 Japanese controls	NA	2p24.1	RPS16P2	rs4666360-C	0.114	3E-6	(Dominant model)	2.136	[1.546-2.95]	Illumina [733202]	N
740	chr2	20354038	20354039	rs11096640	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p24.1	NR	rs11096640-C	0.515157	6E-10		0.0174617	[0.012-0.023] unit increase	Affymetrix [16577313] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	6E-10		0.0248467	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	2E-11		0.0267308	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	2E-11		0.0270221	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518154	3E-10		0.0243417	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	3E-10		0.0234348	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	3E-10		0.0231696	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	8E-10		0.0246133	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	4E-9		0.0219762	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs35633876-G	0.518142	4E-9		0.0235726	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20363073	20363074	rs35633876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p24.1	NR	rs35633876-T	NR	2E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr2	20363073	20363074	rs35633876	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p24.1	NR	rs35633876-G	0.515573	3E-23		0.0079177	[0.0063-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
740	chr2	20363073	20363074	rs35633876	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p24.1	NR	rs35633876-G	0.515573	3E-17		0.00776514	[0.0059-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
740	chr2	20363665	20363666	rs35135293	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs35135293-C	0.483245	5E-9		0.0223829	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
740	chr2	20363665	20363666	rs35135293	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs35135293-C	0.483245	8E-10		0.0234647	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524637	2E-9		0.0249045	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524637	8E-14		0.0287404	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524637	1E-13		0.0297159	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524637	3E-12		0.0286508	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524637	5E-15		0.0302633	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
740	chr2	20367134	20367135	rs11895352	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs11895352-C	0.524609	7E-9		0.0229595	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	7E-9		0.0233436	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	2E-16		0.0333934	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	2E-8		0.0227533	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	9E-16		0.0325461	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	2E-8		0.0224462	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	2E-13		0.0298575	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs11899121-G	0.525573	2E-11		0.0274078	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
740	chr2	20367972	20367973	rs11899121	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs11899121-G	NR	4E-9		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
740	chr2	20367972	20367973	rs11899121	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs11899121-G	0.509	2E-8	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
740	chr2	20369561	20369562	rs870526	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs870526-C	0.478594	4E-8		0.0218693	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
740	chr2	20369561	20369562	rs870526	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p24.1	RN7SL140P	rs870526-C	NR	6E-10		0.017386	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
740	chr2	20369700	20369701	rs870527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs870527-T	NR	9E-10		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
740	chr2	20369700	20369701	rs870527	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs870527-T	0.517	8E-9	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
740	chr2	20371166	20371167	rs907868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs907868-C	0.52736	3E-11		0.0269256	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371300	20371301	rs907867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2p24.1		rs907867-G	NR	1E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
740	chr2	20371300	20371301	rs907867	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p24.1	NR	rs907867-G	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-8		0.0229897	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-14		0.0307961	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-22		0.0382729	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	6E-20		0.0362715	[0.029-0.044] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-12		0.0284229	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-8		0.0228346	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	7E-15		0.0319321	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	9E-11		0.0236844	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-15		0.0294309	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	9E-12		0.0278005	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	2E-15		0.0326181	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	2E-13		0.0288452	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	2E-21		0.0371878	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	3E-11		0.027429	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	1E-9		0.0252812	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	2E-21		0.0385852	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	6E-10		0.0257715	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-11		0.0269364	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-8		0.0228467	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-11		0.0243794	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-10		0.0253831	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	2E-16		0.031047	[0.024-0.038] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	3E-22		0.0382042	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	2E-23		0.0389163	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	1E-20		0.0380146	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	6E-11		0.0268267	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	2p24.1		rs907866-G	0.556765	7E-20		0.0373455	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs907866-G	0.556811	2E-12		0.0258928	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-10		0.0257391	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	8E-14		0.0283396	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	7E-10		0.0225004	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	5E-14		0.0278482	[0.021-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-10		0.0256192	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	1E-13		0.0284142	[0.021-0.036] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	7E-11		0.0237942	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	2E-8		0.0233625	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	5E-12		0.0270596	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-13		0.0301841	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	2E-11		0.0268606	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-8		0.0231723	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs907866-G	0.556811	2E-12		0.0279785	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	3E-11		0.0268304	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	4E-8		0.0201371	[0.013-0.027] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	2E-9		0.022125	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2p24.1		rs907866-G	0.556788	8E-15		0.0296524	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
740	chr2	20371379	20371380	rs907866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs907866-A	NR	1E-9		0.0146	[0.0099-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
740	chr2	20371379	20371380	rs907866	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p24.1	SDC1	rs907866-G	0.554563	4E-17		0.0176886	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
740	chr2	20371379	20371380	rs907866	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p24.1	SDC1	rs907866-G	0.554513	2E-21		0.0182898	[0.015-0.022] unit increase	Affymetrix [NR] (imputed)	N
740	chr2	20371379	20371380	rs907866	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p24.1	NR	rs907866-G	0.554985	1E-15		0.0079263	[0.0057-0.0102] unit increase	Affymetrix [16582621] (imputed)	N
740	chr2	20371379	20371380	rs907866	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p24.1	NR	rs907866-G	0.554985	1E-12		0.00775455	[0.0053-0.0102] unit increase	Affymetrix [16582614] (imputed)	N
740	chr2	20371379	20371380	rs907866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs907866-?	NR	4E-15				NR [~ 8900000] (imputed)	N
740	chr2	20371771	20371772	rs1107850	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p24.1	SDC1	rs1107850-G	0.532443	3E-32		0.0232286	[0.019-0.027] unit increase	Affymetrix [NR] (imputed)	N
740	chr2	20374285	20374286	rs6531216	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p24.1	SDC1	rs6531216-G	0.469044	2E-20		0.018388	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
740	chr2	20388514	20388515	rs6531223	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	2p24.1	SDC1	rs6531223-G	0.406685	5E-6		0.174855	[0.1-0.25] unit increase	NR [7263501] (imputed)	N
740	chr2	20392801	20392802	rs7567544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p24.1	NR	rs7567544-C	0.454669	6E-10		0.0076077	[0.0052-0.01] unit increase	Affymetrix [16585854] (imputed)	N
740	chr2	20392801	20392802	rs7567544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p24.1	NR	rs7567544-C	0.454669	4E-8		0.00806017	[0.0053-0.0109] unit increase	Affymetrix [16585866] (imputed)	N
740	chr2	20393182	20393183	rs7584270	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p24.1	SDC1	rs7584270-T	NR	1E-10		0.0184151	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
740	chr2	20394067	20394068	rs11096646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p24.1	SDC1	rs11096646-T	NR	1E-9		0.0175479	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
740	chr2	20398294	20398295	rs72783289	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	2p24.1	intergenic	rs72783289-?	NR	2E-6				Affymetrix, Illumina [4802696] (imputed)	N
740	chr2	20402379	20402380	rs1131351	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	2p24.1	SDC1	rs1131351-C	NR	8E-6		0.51	[0.29-0.73] unit increase	Affymetrix, Illumina [2354422] (imputed)	N
740	chr2	20412226	20412227	rs3771243	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p24.1	NR	rs3771243-A	0.38855700000000004	3E-12		0.00901418	[0.0064-0.0116] unit increase	Affymetrix [16578495] (imputed)	N
740	chr2	20412226	20412227	rs3771243	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p24.1	NR	rs3771243-A	0.38990899999999995	1E-26		0.0287365	[0.023-0.034] unit increase	Affymetrix [16580851] (imputed)	N
740	chr2	20433217	20433218	rs111612372	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p24.1	SDC1, PUM2	rs111612372-C	0.18	2E-8	(Japanese, Male)	0.033	[0.021-0.045] unit decrease	Illumina [6108953] (imputed)	N
740	chr2	20436974	20436975	rs62111437	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p24.1	NR	rs62111437-?		7E-6				Illumina [4322238] (imputed)	N
740	chr2	20437383	20437384	rs72785217	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p24.1	NR	rs72785217-T	0.336387	2E-10		0.0205889	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
741	chr2	20487267	20487267	rs201758865	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p24.1	PUM2	rs201758865-G	0.9654	5E-18		0.0444	[0.034-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
741	chr2	20499703	20499704	rs74333499	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p24.1	PUM2	rs74333499-T	0.940568	3E-8		0.0239259	[0.015-0.032] unit increase	Affymetrix [NR] (imputed)	N
741	chr2	20500713	20500714	rs79167099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs79167099-A	NR	4E-9		0.0563	[0.037-0.075] unit increase	Affymetrix [9000000] (imputed)	N
741	chr2	20500713	20500714	rs79167099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs79167099-A	NR	1E-9		0.0584	[0.04-0.077] unit increase	Affymetrix [9000000] (imputed)	N
741	chr2	20500713	20500714	rs79167099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs79167099-A	NR	1E-9		0.0586	[0.04-0.077] unit increase	Affymetrix [9000000] (imputed)	N
741	chr2	20521646	20521647	rs719148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs719148-A	NR	5E-16		0.0232	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
741	chr2	20521646	20521647	rs719148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs719148-A	NR	2E-16		0.0236	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
741	chr2	20521646	20521647	rs719148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs719148-A	NR	8E-14		0.0215	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
741	chr2	20521646	20521647	rs719148	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	PUM2	rs719148-G	0.224121	7E-11		0.0161997	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
741	chr2	20571630	20571631	rs11096659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p24.1		rs11096659-?	NR	1E-12				NR [~ 8900000] (imputed)	N
742	chr2	20583769	20583770	rs112939033	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	2p24.1		rs112939033-?	NR	1E-6		0.22	[0.13-0.31] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
742	chr2	20598509	20598510	rs10186458	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (early stage) in type 1 diabetes	555 European ancestry cases, 245 cases, 1,903 European ancestry controls, 690 controls	602 cases, 1,459 controls	2p24.1	NR	rs10186458-C	0.44	2E-6		1.24	[1.13-1.35]	Illumina [NR] (imputed)	N
742	chr2	20600010	20600011	rs75524451	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p24.1	NR	rs75524451-T	0.063	6E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
742	chr2	20617423	20617424	rs145225702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs145225702-?	NR	2E-14				NR [~ 8900000] (imputed)	N
742	chr2	20675225	20675226	rs13390371	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p24.1	RHOB	rs13390371-A	0.0886	5E-6		1.751	[1.378-2.225]	Affymetrix, Illumina [14074516] (imputed)	N
742	chr2	20688518	20688519	rs13021401	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	2p24.1	RHOB	rs13021401-T	0.23	3E-6		1.21	[1.12-1.31]	Illumina [489814]	N
743	chr2	20715655	20715656	rs342130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p24.1		rs342130-?	NR	4E-8				NR [~ 8900000] (imputed)	N
743	chr2	20721974	20721975	rs62122042	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2p24.1		rs62122042-A	0.1277	6E-6		0.04612	[0.026-0.066] unit increase	Affymetrix [15580782] (imputed)	N
743	chr2	20728466	20728467	rs57853403	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p24.1	AC012065.4	rs57853403-T	0.0600086	5E-8		0.06423585	[0.041-0.087] unit increase	Affymetrix [7288503] (imputed)	N
743	chr2	20736363	20736364	rs13382310	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		HS1BP3-IT1	rs13382310-T	0.26	6E-6				Illumina [1679420] (imputed)	N
743	chr2	20747777	20747778	rs61185326	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	2p24.1	NR	rs61185326-?	NR	4E-6		4.6	NR z score increase	Illumina [8500000] (imputed)	N
743	chr2	20754341	20754342	rs112020767	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	2p24.1	HS1BP3	rs112020767-A	0.0349	4E-6		0.115	[0.066-0.164] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
743	chr2	20767140	20767141	rs113898337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p24.1		rs113898337-?	NR	3E-8				NR [~ 8900000] (imputed)	N
743	chr2	20776434	20776435	rs182836018	34827661	Emmert DB	2021-11-09	Biomolecules	Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.	Atrial fibrillation	110 European ancestry cases, 10,399 European ancestry controls	NA	2p24.1		rs182836018-?	NR	7E-7				Illumina [19057004] (imputed)	N
743	chr2	20804307	20804308	rs896738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs896738-G	NR	6E-10		0.0421	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr2	20804307	20804308	rs896738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs896738-G	NR	6E-11		0.0446	[0.031-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
743	chr2	20804307	20804308	rs896738	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs896738-G	NR	2E-17		0.0578	[0.044-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr2	20847173	20847174	rs111508381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs111508381-A	NR	2E-9		0.0437	[0.029-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
744	chr2	20848191	20848192	rs75352129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p24.1	HS1BP3	rs75352129-?	NR	2E-39		0.1304	[0.11-0.15] unit increase novel	Illumina [6108953] (imputed)	N
744	chr2	20848191	20848192	rs75352129	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	2p24.1	HS1BP3	rs75352129-?	NR	6E-59		0.2101	[0.18-0.24] unit increase novel	Illumina [6108953] (imputed)	N
744	chr2	20867743	20867744	rs7594056	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p24.1	GDF7	rs7594056-?	0.3142	7E-15		0.97	[0.96-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
744	chr2	20878104	20878105	rs9306894	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p24.1	NR	rs9306894-G	NR	9E-33		1.086	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
744	chr2	20878104	20878105	rs9306894	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p24.1	NR	rs9306894-G	0.515	1E-10		1.134	[1.09-1.18]	Affymetrix, Illumina [10186136] (imputed)	N
744	chr2	20878104	20878105	rs9306894	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	2p24.1	GDF7	rs9306894-G	0.3448	3E-17		1.11	[1.09-1.14]	Affymetrix, Illumina [37144863] (imputed)	N
744	chr2	20878152	20878153	rs9306895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p24.1		rs9306895-C	NR	4E-14		0.0918	[0.068-0.116] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
744	chr2	20878152	20878153	rs9306895	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p24.1	NR	rs9306895-C	0.36	3E-21		1.08	[1.06-1.10]	Illumina [20370935] (imputed)	N
744	chr2	20878405	20878406	rs3072	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	2p24.1		rs3072-C	NR	1E-16		0.1258	[0.096-0.156] unit increase	Affymetrix, Illumina [25752093] (imputed)	N
744	chr2	20878405	20878406	rs3072	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	2p24.1	NR	rs3072-T	0.63	9E-13		0.113	unit decrease	NR [2324712] (imputed)	N
744	chr2	20878819	20878820	rs7255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p24.1		rs7255-C	NR	2E-16		0.0157	[0.012-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
744	chr2	20878819	20878820	rs7255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p24.1		rs7255-C	NR	2E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
744	chr2	20878819	20878820	rs7255	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	4,972 European ancestry cases, 99,858 European ancestry controls	2p24.1	AC012065.7	rs7255-T	0.4631	9E-13		1.1	1.07-1.13	Affymetrix [18689289] (imputed)	N
744	chr2	20878819	20878820	rs7255	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p24.1	C2orf43	rs7255-C	0.4803	3E-9		0.1924	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
744	chr2	20878819	20878820	rs7255	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p24.1	C2orf43	rs7255-C	0.479	4E-22		0.2354	[0.19-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
744	chr2	20878819	20878820	rs7255	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p24.1	HS1BP3	rs7255-C	0.557415867654967	4E-6		0.002492	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
744	chr2	20878819	20878820	rs7255	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p24.1	GDF7, C2orf43	rs7255-T		4E-6	(EA)	0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
744	chr2	20878819	20878820	rs7255	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p24.1	GDF7, C2orf43	rs7255-T		3E-6		0.175	unit decrease	Affymetrix [at least 2696785] (imputed)	N
744	chr2	20878819	20878820	rs7255	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p24.1	GDF7, C2orf43	rs7255-T		2E-15		0.205	unit decrease	Affymetrix [at least 2696785] (imputed)	N
744	chr2	20878819	20878820	rs7255	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Esophageal adenocarcinoma	4,112 European ancestry cases, 17,159 European ancestry controls	NA	2p24.1	GDF7, C2orf43	rs7255-T		4E-8		1.1654	[1.11-1.22]	Illumina [13074274] (imputed)	N
744	chr2	20878819	20878820	rs7255	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	2p24.1	LDAH, GDF7	rs7255-T		9E-11		1.14	[1.09-1.18]	Illumina [11951684] (imputed)	N
744	chr2	20880832	20880833	rs10193919	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	2p24.1		rs10193919-T	0.583386494	2E-8		1.123898	[1.078737127-1.170949565]	Illumina [8919992] (imputed)	N
744	chr2	20881839	20881840	rs2289081	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2p24.1	C2orf43	rs2289081-?		2E-9				Illumina [5041948] (imputed)	N
744	chr2	20881839	20881840	rs2289081	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p24.1	C2orf43	rs2289081-C	0.36	6E-12		0.223	[0.16-0.28] unit decrease	Affymetrix [~ 9800000] (imputed)	N
744	chr2	20882448	20882449	rs13382862	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	2p24.1	C2orf43, GDF7	rs13382862-A	0.341	1E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [5363770] (imputed)	N
744	chr2	20885320	20885321	rs17663874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs17663874-A	NR	5E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
744	chr2	20885320	20885321	rs17663874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs17663874-A	NR	7E-11		0.0218	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
744	chr2	20885320	20885321	rs17663874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs17663874-A	NR	2E-11		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
744	chr2	20888264	20888265	rs13385191	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	2p24.1	C2orf43	rs13385191-G	NR	5E-6		1.17	[NR]	Illumina [4550396] (imputed)	N
744	chr2	20888264	20888265	rs13385191	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	2p24.1	C2orf43	rs13385191-G	0.44	8E-8		1.15	[1.10-1.21]	Illumina [510687]	N
744	chr2	20892005	20892006	rs340600	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	2p24.1	LDAH, C2orf43	rs340600-T	0.2	2E-19		0.459	[0.36-0.56] unit decrease	Illumina [8400000] (imputed)	N
744	chr2	20892005	20892006	rs340600	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2p24.1	LDAH, C2orf43	rs340600-T	0.203	7E-18		0.366	[0.28-0.45] unit decrease	Illumina [8400000] (imputed)	N
744	chr2	20892005	20892006	rs340600	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2p24.1	LDAH, C2orf43	rs340600-T	0.2	1E-16	(EA)	0.379	[0.29-0.47] unit decrease	Illumina [8400000] (imputed)	N
744	chr2	20892005	20892006	rs340600	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	2p24.1	LDAH, C2orf43	rs340600-T	0.2	8E-22		0.439	[0.35-0.53] unit decrease	Illumina [8400000] (imputed)	N
744	chr2	20903014	20903015	rs4971516	21059979	Shen H	2010-11-08	Arch Intern Med	Familial defective apolipoprotein B-100 and increased low-density lipoprotein cholesterol and coronary artery calcification in the old order amish.	LDL cholesterol	841 Amish individuals	663 Amish inidividuals	2p24.1	APOB	rs4971516-?	0.06	2E-52	(LDL)			Affymetrix [369241]	N
744	chr2	20903014	20903015	rs4971516	21059979	Shen H	2010-11-08	Arch Intern Med	Familial defective apolipoprotein B-100 and increased low-density lipoprotein cholesterol and coronary artery calcification in the old order amish.	LDL cholesterol	841 Amish individuals	663 Amish inidividuals	2p24.1	APOB	rs4971516-?	0.06	2E-40	(total cholesterol)			Affymetrix [369241]	N
744	chr2	20926295	20926296	rs56078519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs56078519-G	NR	1E-39		0.0804	[0.068-0.092] unit increase	Affymetrix [9000000] (imputed)	N
744	chr2	20926295	20926296	rs56078519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs56078519-G	NR	1E-48		0.0895	[0.078-0.101] unit increase	Affymetrix [9000000] (imputed)	N
744	chr2	20926295	20926296	rs56078519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs56078519-G	NR	7E-49		0.0899	[0.078-0.102] unit increase	Affymetrix [9000000] (imputed)	N
745	chr2	20999519	20999520	rs115704890	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	C2orf43	rs115704890-T	0.917882	1E-17		0.0323101	[0.025-0.04] unit decrease	Affymetrix [NR] (imputed)	N
745	chr2	21013463	21013464	rs79617217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs79617217-G	NR	3E-9		0.0312	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
745	chr2	21055514	21055515	rs62123888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs62123888-C	NR	4E-11		0.0324	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
745	chr2	21055514	21055515	rs62123888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs62123888-C	NR	3E-11		0.0325	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
745	chr2	21056059	21056060	rs16988099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs16988099-G	NR	3E-9		0.0568	[0.038-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21065564	21065565	rs34449399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs34449399-C	NR	3E-36		0.0775	[0.065-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21065564	21065565	rs34449399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs34449399-C	NR	1E-42		0.0845	[0.072-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21065564	21065565	rs34449399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs34449399-C	NR	1E-61		0.1024	[0.09-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21072021	21072022	rs7592541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p24.1		rs7592541-?	NR	3E-8				NR [~ 8900000] (imputed)	N
745	chr2	21074997	21074998	rs56028521	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs56028521-?	NR	6E-11		2.093	[1.46-2.73] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
745	chr2	21077207	21077208	rs115692156	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	C2orf43	rs115692156-A	0.99116	6E-21		0.111354	[0.088-0.135] unit increase	Affymetrix [NR] (imputed)	N
745	chr2	21082035	21082036	rs78960801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs78960801-A	NR	8E-13		0.0359	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21082035	21082036	rs78960801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs78960801-A	NR	7E-10		0.0323	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
745	chr2	21085409	21085410	rs11096688	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	2p24.1	C2orf43	rs11096688-T	0.1	7E-7		1.45	[NR]	Illumina [5430816] (imputed)	N
745	chr2	21086426	21086427	rs62123894	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs62123894-A	NR	7E-10		0.0207	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21092105	21092106	rs10178381	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs10178381-?	NR	2E-10		1.994	[1.37-2.61] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
745	chr2	21100437	21100438	rs13008369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs13008369-T	NR	5E-27		0.0392	[0.032-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100437	21100438	rs13008369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs13008369-T	NR	7E-34		0.0442	[0.037-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100437	21100438	rs13008369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs13008369-T	NR	5E-49		0.0537	[0.047-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100777	21100778	rs7569328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs7569328-T	NR	3E-12		0.0649	[0.047-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100777	21100778	rs7569328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs7569328-T	NR	6E-13		0.0673	[0.049-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100777	21100778	rs7569328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs7569328-T	NR	3E-15		0.0738	[0.055-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
745	chr2	21100777	21100778	rs7569328	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	2p24.1	intergenic	rs7569328-T	0.15	1E-7		0.0995	[0.063-0.136] unit decrease	Affymetrix [~ 2740000] (imputed)	N
745	chr2	21100866	21100867	rs7583126	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs7583126-?	NR	5E-12		1.563	[1.1-2.02] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21115816	21115817	rs72788528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs72788528-C	NR	4E-11		0.0344	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21115816	21115817	rs72788528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs72788528-C	NR	2E-16		0.0427	[0.033-0.053] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21115885	21115886	rs61636751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs61636751-A	NR	9E-13		0.0442	[0.032-0.056] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21119849	21119850	rs3903032	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs3903032-?	NR	2E-20		2.518	[1.88-3.16] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21123351	21123352	rs6711016	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs6711016-A	NR	5E-13		0.0850388	[0.062-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21123351	21123352	rs6711016	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	2p24.1	APOB	rs6711016-C	0.71	4E-8	(TG)	0.08	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	2E-8		0.134203	[0.088-0.181] unit increase	NR [11722792] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	2E-9		0.142527	[0.096-0.189] unit increase	NR [11722792] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	5E-9		0.138644	[0.092-0.185] unit increase	NR [11722792] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	1E-8		0.139019	[0.091-0.187] unit increase	NR [11722792] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	2E-8		0.135165	[0.088-0.182] unit increase	NR [11722792] (imputed)	N
746	chr2	21124391	21124392	rs115109251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs115109251-G	0.992246	5E-8		0.132065	[0.085-0.18] unit increase	NR [11722792] (imputed)	N
746	chr2	21127043	21127044	rs74629722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs74629722-C	NR	1E-13		0.0273	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21127043	21127044	rs74629722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs74629722-C	NR	3E-73		0.0663	[0.059-0.074] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21127043	21127044	rs74629722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs74629722-C	NR	6E-95		0.0758	[0.069-0.083] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21127043	21127044	rs74629722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs74629722-C	NR	8E-142		0.0931	[0.086-0.1] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21128293	21128294	rs73228424	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p24.1	AC012361.1	rs73228424-A	0.0164566	1E-8		0.12550563	[0.082-0.169] unit decrease	Affymetrix [7288503] (imputed)	N
746	chr2	21133882	21133883	rs10198175	24882193	Winham SJ	2014-04-19	J Affect Disord	Bipolar disorder with comorbid binge eating history: a genome-wide association study implicates APOB.	Binge eating behaviour and bipolar disorder	206 European ancestry cases with binge eating behavior, 723 European ancestry cases without binge eating behavior, 1,034 European ancestry controls	70 European ancestry cases with binge eating behavior, 758 European ancestry cases without binge eating behavior, 832 European ancestry controls	2p24.1	APOB	rs10198175-?	NR	1E-6		1.92	[NR]	Affymetrix [8466825] (imputed)	N
746	chr2	21134010	21134011	rs56296027	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs56296027-T	0.776316	5E-10		0.0309003	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
746	chr2	21135686	21135687	rs76588427	25569183	Vijai J	2015-01-08	Nat Commun	A genome-wide association study of marginal zone lymphoma shows association to the HLA region.	Marginal zone lymphoma	825 European ancestry cases, 6,221 European ancestry controls	456 European ancestry cases, 906 European ancestry controls	2p24.1	intergenic	rs76588427-A	0.017	3E-6		2.05	[1.52-2.76]	Illumina [611856]	N
746	chr2	21136326	21136327	rs12710748	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs12710748-T	0.588602	6E-9		0.0242795	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-12		0.0294867	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	5E-12		0.0283484	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	1E-9		0.0249029	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-12		0.028876	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588964	2E-8		0.0232417	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	5E-14		0.0316162	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-11		0.0281188	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	9E-9		0.0241957	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-12		0.0295018	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	9E-16		0.0335392	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-13		0.0308554	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-9		0.0251506	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
746	chr2	21141814	21141815	rs4533439	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4533439-T	0.588962	2E-11		0.0280904	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
746	chr2	21142993	21142994	rs4296389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs4296389-C	0.750108	2E-12		0.0327622	[0.024-0.042] unit increase	NR [11722792] (imputed)	N
746	chr2	21142993	21142994	rs4296389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs4296389-C	0.750108	2E-9		0.0273448	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
746	chr2	21142993	21142994	rs4296389	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	2p24.1		rs4296389-C	0.750081	2E-10		0.0287062	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
746	chr2	21142993	21142994	rs4296389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p24.1		rs4296389-T	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
746	chr2	21142993	21142994	rs4296389	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p24.1	APOB	rs4296389-?	NR	3E-29		0.02383	[0.019-0.028] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21142993	21142994	rs4296389	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2p24.1	APOB	rs4296389-?	NR	7E-25		0.02271	[0.018-0.027] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21142993	21142994	rs4296389	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs4296389-?	NR	1E-17		1.483	[1.12-1.85] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21142993	21142994	rs4296389	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	2p24.1	APOB	rs4296389-?	NR	1E-28		0.01104	[0.0089-0.0131] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21145664	21145665	rs10175646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs10175646-C	NR	3E-10		0.0407	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21145664	21145665	rs10175646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs10175646-C	NR	3E-15		0.0511	[0.038-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21145664	21145665	rs10175646	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs10175646-C	NR	7E-26		0.0682	[0.055-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21148891	21148891	rs397870692	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p24.1	LDAH, APOB	rs397870692-?		5E-19		0.0662	[0.052-0.081] unit decrease	Illumina [31500000] (imputed)	N
746	chr2	21149423	21149424	rs139919599	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs139919599-?	NR	2E-21		2.76	[2.14-3.38] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21152239	21152240	rs36143286	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p24.1	LDAH, APOB	rs36143286-?		1E-20		0.0721	[0.057-0.087] unit decrease	Illumina [31500000] (imputed)	N
746	chr2	21190023	21190024	rs7604788	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p24.1		rs7604788-C	0.966567	2E-10		0.035	[0.023-0.047] unit increase	NR [7250403] (imputed)	N
746	chr2	21190208	21190209	rs6547409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs6547409-C	0.948735	3E-9		0.0536183	[0.036-0.071] unit increase	NR [11722792] (imputed)	N
746	chr2	21190208	21190209	rs6547409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs6547409-C	0.948735	5E-32		0.111228	[0.093-0.13] unit increase	NR [11722792] (imputed)	N
746	chr2	21190208	21190209	rs6547409	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs6547409-C	0.948735	3E-17		0.0758679	[0.058-0.093] unit increase	NR [11722792] (imputed)	N
746	chr2	21193945	21193946	rs6728178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs6728178-G	0.770745	2E-31		0.0570751	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
746	chr2	21193945	21193946	rs6728178	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs6728178-?	NR	2E-13	(S_VLDL_TG)	0.06284242	NR unit decrease	Illumina [609262]	N
746	chr2	21193945	21193946	rs6728178	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs6728178-?	NR	2E-10	(S_VLDL_TG)	0.07923133	NR unit decrease	Illumina [609262]	N
746	chr2	21194142	21194143	rs79106033	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs79106033-T	NR	2E-9		0.0451	[0.03-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21194142	21194143	rs79106033	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs79106033-T	NR	1E-9		0.0458	[0.031-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	9E-141		0.122255	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	5E-39		0.0641656	[0.055-0.074] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	6E-112		0.109507	[0.1-0.119] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	7E-26		0.0514288	[0.042-0.061] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	4E-24		0.0497918	[0.04-0.059] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	8E-15		0.0355921	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	2E-110		0.108594	[0.099-0.118] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	7E-51		0.0734076	[0.064-0.083] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs11902417-G	0.772145	3E-26		0.0519476	[0.042-0.062] unit increase	NR [11722792] (imputed)	N
746	chr2	21198899	21198900	rs11902417	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs11902417-A	NR	4E-12		0.0811392	[0.058-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21198899	21198900	rs11902417	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs11902417-?	NR	5E-8		0.02562767	[0.016-0.035] unit decrease	Illumina [31978265] (imputed)	N
746	chr2	21198899	21198900	rs11902417	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs11902417-?	NR	9E-10		0.7960089	[0.54-1.05] unit increase	Illumina [31978362] (imputed)	N
746	chr2	21198899	21198900	rs11902417	31150472	Khlebus E	2019-05-31	PLoS One	Multiple rare and common variants in APOB gene locus associated with oxidatively modified low-density lipoprotein levels.	Oxidized LDL cholesterol levels	725 Russian ancestry individuals	NA	2p24.1	APOB	rs11902417-?	0.385383	4E-9				Illumina [101704]	N
746	chr2	21198899	21198900	rs11902417	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	HDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	APOB	rs11902417-G	0.78	4E-7		0.02	[0.01-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
746	chr2	21199425	21199426	rs17041688	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	2p24.1	NR	rs17041688-?	NR	9E-6		0.092	[0.051-0.133] unit decrease	Illumina [1770809] (imputed)	N
746	chr2	21200518	21200519	rs10495713	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p24.1	NR	rs10495713-?		8E-9	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
746	chr2	21203876	21203877	rs10184054	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs10184054-C	0.77588	9E-14		0.0352809	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
746	chr2	21204024	21204025	rs6544366	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs6544366-G	0.771663	6E-23		0.0473314	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
746	chr2	21204024	21204025	rs6544366	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs6544366-T	NR	4E-12		0.0810576	[0.058-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21204024	21204025	rs6544366	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	2p24.1		rs6544366-T	0.23	1E-7		0.78	[0.49-1.07] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
746	chr2	21204024	21204025	rs6544366	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs6544366-?	NR	2E-8		0.0275576	[0.018-0.037] unit decrease	Illumina [31978265] (imputed)	N
746	chr2	21204024	21204025	rs6544366	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs6544366-?	NR	1E-11		0.9127752	[0.65-1.18] unit increase	Illumina [31978362] (imputed)	N
746	chr2	21204024	21204025	rs6544366	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	intergenic	rs6544366-T	0.2243	2E-67		0.0549	[0.049-0.061] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
746	chr2	21204024	21204025	rs6544366	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	APOB	rs6544366-T	0.22	2E-7		0.04	[0.03-0.05] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
746	chr2	21205456	21205457	rs10172650	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2p24.1	APOB	rs10172650-A	0.13	5E-15	(Asian initial, BMI unadjusted)	0.094	[0.07-0.118] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
746	chr2	21205456	21205457	rs10172650	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	2p24.1	APOB	rs10172650-A	0.13	3E-13	(BMI unadjusted)	0.102	[0.075-0.129] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
746	chr2	21205456	21205457	rs10172650	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2p24.1	APOB	rs10172650-A	0.13	4E-14	(Asian initial, BMI unadjusted)	0.092	[0.068-0.116] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
746	chr2	21205456	21205457	rs10172650	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	22,526 East Asian ancestry individuals	37,842 East Asian ancestry individuals	2p24.1	APOB	rs10172650-A	0.13	1E-12	(BMI unadjusted)	0.1	[0.073-0.127] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4564803-G	0.771845	3E-106		0.104497	[0.095-0.114] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs4564803-G	0.771845	9E-54		0.0738226	[0.064-0.083] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs4564803-G	0.771845	8E-34		0.0582221	[0.049-0.068] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs4564803-G	0.771845	4E-27		0.0520096	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs4564803-G	0.77182	6E-26		0.0504774	[0.041-0.06] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs4564803-G	0.77182	1E-49		0.0716528	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4564803-G	0.771845	3E-29		0.0534726	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	NR	8E-64		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.761	4E-59	(EA)	0.078	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.742	1E-7	(Hispanic)	0.082	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	NR	2E-19		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.761	1E-25	(EA)	0.056	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	NR	4E-22		0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.761	2E-29	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	NR	1E-47		0.058	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.761	7E-43	(EA)	0.06	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21205501	21205502	rs4564803	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4564803-G	0.742	4E-8	(Hispanic)	0.078	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21206182	21206183	rs6754295	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs6754295-T	0.771433	3E-8		0.0263109	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
746	chr2	21206182	21206183	rs6754295	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs6754295-G	NR	4E-12		0.0809675	[0.058-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21206182	21206183	rs6754295	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs6754295-?	NR	3E-8		0.02489028	[0.016-0.034] unit decrease	Illumina [31978265] (imputed)	N
746	chr2	21206182	21206183	rs6754295	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs6754295-?	NR	2E-8		0.701763	[0.46-0.95] unit increase	Illumina [31978362] (imputed)	N
746	chr2	21206182	21206183	rs6754295	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs6754295-?	NR	4E-47	(VLDL.small, fasting)	4.127	[NR] unit decrease	Illumina [335603]	N
746	chr2	21206182	21206183	rs6754295	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	2p24.1	APOB	rs6754295-C	0.25	3E-8		0.08	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
746	chr2	21206182	21206183	rs6754295	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	HDL cholesterol	20,697 European ancestry individuals, 715 Orcadian individuals	NA	2p24.1	APOB	rs6754295-C	0.25	4E-8		0.07	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
746	chr2	21206274	21206275	rs11124924	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2p24.1	LDAH, APOB	rs11124924-G	0.92	4E-9		1.09	[1.04-1.14]	Illumina [5167567] (imputed)	N
746	chr2	21208210	21208211	rs7557067	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs7557067-G	NR	2E-12		0.0821923	[0.059-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21208210	21208211	rs7557067	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs7557067-?	NR	1E-8		0.02773443	[0.018-0.037] unit decrease	Illumina [31978265] (imputed)	N
746	chr2	21208210	21208211	rs7557067	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs7557067-?	NR	7E-12		0.9193369	[0.66-1.18] unit increase	Illumina [31978362] (imputed)	N
746	chr2	21208210	21208211	rs7557067	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p24.1	APOB	rs7557067-G	0.22	9E-12		0.08	[0.04-0.12] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
746	chr2	21215644	21215645	rs12992267	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	2p24.1	LDAH, APOB	rs12992267-?	NR	1E-11		0.05102	[0.036-0.066] unit increase novel	Illumina [6108953] (imputed)	N
746	chr2	21216814	21216815	rs62122481	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	APOB	rs62122481-C	0.623091	7E-335		0.0839859	[0.08-0.088] unit decrease	Affymetrix [NR] (imputed)	N
746	chr2	21217489	21217490	rs13392272	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p24.1	PUM2	rs13392272-?	NR	1E-306		0.095	[0.09-0.1] unit decrease	Affymetrix [5701386] (imputed)	N
746	chr2	21217489	21217490	rs13392272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs13392272-?	NR	3E-6		0.02097973	[0.012-0.03] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21217489	21217490	rs13392272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs13392272-?	NR	6E-12		2.694755	[1.93-3.46] unit increase	Illumina [32003504] (imputed)	N
746	chr2	21217489	21217490	rs13392272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs13392272-?	NR	1E-16		2.879721	[2.2-3.56] unit increase	Illumina [31808917] (imputed)	N
746	chr2	21217489	21217490	rs13392272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs13392272-?	NR	5E-6		0.5633115	[0.32-0.81] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	NR	2E-40		0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.526	3E-33	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	NR	3E-87		0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.607	1E-6	(Hispanic)	0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.526	3E-78	(EA)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	NR	3E-95		0.09	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.607	5E-8	(Hispanic)	0.084	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.526	9E-86	(EA)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	NR	2E-17		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs13392272-C	0.526	7E-14	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21217489	21217490	rs13392272	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	LDL cholesterol	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	2p24.1	APOB	rs13392272-T	0.387	2E-12	(Hispanic)	0.095	[0.068-0.122] unit increase	Affymetrix [at least 370268] (imputed)	N
746	chr2	21218804	21218805	rs6756501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	2p24.1		rs6756501-T	0.080524	7E-13		0.0526792	[0.038-0.067] unit increase	Illumina [13471903] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207419	3E-66		0.0819539	[0.073-0.091] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	7E-46		0.0694618	[0.06-0.079] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	2E-100		0.102374	[0.093-0.112] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	4E-86		0.0954515	[0.086-0.105] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	5E-65		0.081342	[0.072-0.091] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	5E-139		0.122762	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	2E-88		0.0980921	[0.088-0.108] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	9E-68		0.0851993	[0.076-0.095] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	4E-30		0.0567511	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	1E-39		0.0654262	[0.056-0.075] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207427	3E-22		0.047267	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	1E-42		0.0695187	[0.06-0.079] unit increase	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs4665710-A	0.20741	5E-60		0.0805191	[0.071-0.09] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p24.1		rs4665710-A	0.206777	3E-44		0.0711263	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	2E-148		0.129381	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	5E-24		0.0501898	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	3E-58		0.078928	[0.069-0.089] unit increase	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs4665710-A	0.207412	2E-23		0.0498438	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
746	chr2	21221034	21221035	rs4665710	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs4665710-?	NR	7E-7		0.02314104	[0.014-0.032] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21221034	21221035	rs4665710	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs4665710-?	NR	3E-8		0.7165994	[0.46-0.97] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p24.1	APOB	rs4665710-C	0.794	2E-20	(Sodium-coupled monocarboxylate transporter 1, SLC5A8.13691.10.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	NR	1E-70		0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.247	2E-7	(Hispanic)	0.082	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.215	9E-67	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	NR	2E-12		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.215	2E-18	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	NR	3E-14		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.215	4E-21	(EA)	0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	NR	7E-56		0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.247	5E-7	(Hispanic)	0.072	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs4665710-A	0.215	9E-51	(EA)	0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21221034	21221035	rs4665710	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	2p24.1	APOB	rs4665710-C	0.76	1E-31		0.082	[0.068-0.096] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
746	chr2	21221356	21221357	rs952274	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs952274-G	0.798526	4E-9		0.0302596	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
746	chr2	21221356	21221357	rs952274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	2p24.1		rs952274-T	0.08084	3E-8		0.047983	[0.031-0.065] unit decrease	Illumina [13465896] (imputed)	N
746	chr2	21221398	21221399	rs952275	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p24.1		rs952275-T	0.479604	1E-28		0.0462601	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
746	chr2	21221398	21221399	rs952275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	2p24.1	NR	rs952275-G	NR	5E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21221398	21221399	rs952275	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2p24.1	APOB	rs952275-G	0.43	2E-27	(Free cholesterol in IDL)	0.11	[0.09-0.13] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
746	chr2	21225280	21225281	rs1042034	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs1042034-C	NR	1E-12		0.0867271	[0.063-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21225280	21225281	rs1042034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p24.1	APOB	rs1042034-T	0.793363	6E-20		0.025019975	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
746	chr2	21225280	21225281	rs1042034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.213292	4E-23				Affymetrix, Illumina [22063850] (imputed)	N
746	chr2	21225280	21225281	rs1042034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.207313	2E-24		0.023703	[0.019-0.028] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
746	chr2	21225280	21225281	rs1042034	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p24.1		rs1042034-?	NR	1E-9		0.0151254	[0.01-0.02] unit increase	NR [6912294] (imputed)	N
746	chr2	21225280	21225281	rs1042034	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1042034-?	NR	5E-10	(S_VLDL_L)	0.05131833	NR unit decrease	Illumina [609262]	N
746	chr2	21225280	21225281	rs1042034	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1042034-?	NR	3E-10	(TotFA)	0.027771853	NR unit decrease	Illumina [609262]	N
746	chr2	21225280	21225281	rs1042034	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1042034-?	NR	1E-9	(M_VLDL_PL)	0.067285426	NR unit decrease	Illumina [609262]	N
746	chr2	21225280	21225281	rs1042034	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1042034-?	NR	2E-7	(S_VLDL_L)	0.07703361	NR unit decrease	Illumina [609262]	N
746	chr2	21225280	21225281	rs1042034	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1042034-?	NR	2E-7	(M_VLDL_PL)	0.065373324	NR unit decrease	Illumina [609262]	N
746	chr2	21225280	21225281	rs1042034	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs1042034-?	NR	4E-8		0.02705578	[0.017-0.037] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21225280	21225281	rs1042034	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs1042034-?	NR	2E-12		0.9489343	[0.68-1.21] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21225280	21225281	rs1042034	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	2p24.1		rs1042034-T	0.7862	1E-22	(EA)	0.0319	[0.025-0.038] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
746	chr2	21225280	21225281	rs1042034	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	2p24.1		rs1042034-T	0.7884	1E-21	(EA)	0.015	[0.012-0.018] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
746	chr2	21225280	21225281	rs1042034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p24.1		rs1042034-?	NR	2E-18				NR [~ 8900000] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	NR	1E-72		0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.244	7E-7	(Hispanic)	0.079	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.215	3E-67	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	NR	2E-12		0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.215	3E-18	(EA)	0.048	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	NR	3E-14		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.215	7E-21	(EA)	0.054	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	NR	5E-58		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.244	4E-7	(Hispanic)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1042034-C	0.215	2E-51	(EA)	0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21225280	21225281	rs1042034	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2p24.1	APOB	rs1042034-C	0.22	1E-45		5.99	[5.11-6.87] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
746	chr2	21225280	21225281	rs1042034	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2p24.1	APOB	rs1042034-C	0.22	1E-30		0.9	[0.72-1.08] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
746	chr2	21225484	21225485	rs1801702	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	2p24.1	APOB	rs1801702-?		5E-7	(African American)	0.20006934	[0.12-0.28] unit decrease	Illumina [13620258] (imputed)	N
746	chr2	21225752	21225753	rs1042031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs1042031-T	NR	1E-16		0.0257	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21225752	21225753	rs1042031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs1042031-T	NR	2E-65		0.0529	[0.047-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21225752	21225753	rs1042031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs1042031-T	NR	5E-68		0.054	[0.048-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21225752	21225753	rs1042031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs1042031-T	NR	1E-12		0.0231	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21225752	21225753	rs1042031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs1042031-T	NR	3E-75		0.0569	[0.051-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	2E-41		0.0647778	[0.055-0.074] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	1E-50		0.0730648	[0.064-0.083] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	4E-114		0.111908	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	2E-95		0.10118	[0.092-0.111] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	6E-89		0.0980421	[0.088-0.108] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	3E-110		0.111032	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	2E-102		0.108836	[0.099-0.119] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	6E-163		0.138922	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	2E-112		0.112918	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	6E-69		0.0860161	[0.076-0.096] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	6E-99		0.102309	[0.093-0.112] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	1E-108		0.106819	[0.097-0.116] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	3E-64		0.0807267	[0.071-0.09] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	7E-56		0.0800736	[0.07-0.09] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	6E-94		0.104858	[0.095-0.115] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	8E-131		0.120501	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	4E-103		0.105841	[0.096-0.115] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	2E-52		0.0731167	[0.064-0.083] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	5E-106		0.108062	[0.098-0.118] unit increase	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs2678379-A	0.206178	3E-97		0.102501	[0.093-0.112] unit decrease	NR [11722792] (imputed)	N
746	chr2	21226559	21226560	rs2678379	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC5A8	5,361 Icelandic ancestry individuals	NA	2p24.1		rs2678379-A	0.2419	2E-44		0.300328	[0.26-0.34] unit increase	Illumina [7506463] (imputed)	N
746	chr2	21226559	21226560	rs2678379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p24.1		rs2678379-G	NR	2E-131		0.0592	[0.054-0.064] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
746	chr2	21226559	21226560	rs2678379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p24.1		rs2678379-G	NR	1E-102		0.0537	[0.049-0.059] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
746	chr2	21226559	21226560	rs2678379	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs2678379-?	NR	5E-7		0.02340742	[0.014-0.033] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21226559	21226560	rs2678379	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs2678379-?	NR	5E-9		0.753948	[0.5-1.01] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21226559	21226560	rs2678379	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	2p24.1	APOB	rs2678379-?		1E-19				NR [NR]	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	NR	2E-71		0.08	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.247	3E-7	(Hispanic)	0.081	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.215	1E-66	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	NR	1E-11		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.215	3E-17	(EA)	0.047	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	NR	2E-13		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.215	4E-20	(EA)	0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	NR	2E-58		0.066	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.247	3E-7	(Hispanic)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs2678379-A	0.215	2E-52	(EA)	0.07	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21226559	21226560	rs2678379	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	2p24.1	APOB	rs2678379-A	0.24	7E-21		0.065	[0.051-0.079] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
746	chr2	21227211	21227212	rs183117027	30206226	Chang J	2018-09-11	Nat Commun	Exome-wide analysis identifies three low-frequency missense variants associated with pancreatic cancer risk in Chinese populations.	Pancreatic cancer	943 Chinese ancestry cases, 3,908 Chinese ancestry controls	2,142 Chinese ancestry cases, 4,697 Chinese ancestry controls	2p24.1	APOB	rs183117027-A	0.006	4E-8		2.34	[1.72-3.16]	Illumina [174391]	N
746	chr2	21228430	21228431	rs199954127	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs199954127-?	NR	1E-11		0.928503	[0.65-1.21] unit decrease	NR [9800000] (imputed)	N
746	chr2	21228826	21228827	rs1801701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs1801701-T	NR	6E-33		0.048	[0.04-0.056] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21228826	21228827	rs1801701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs1801701-T	NR	2E-42		0.0548	[0.047-0.063] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21228826	21228827	rs1801701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs1801701-T	NR	4E-23		0.0399	[0.032-0.048] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	2E-8		0.59588	[0.39-0.8] unit increase	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	8E-51		1.49216	[1.3-1.69] unit decrease	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	4E-68		1.7966	[1.59-2] unit decrease	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	3E-89		2.05564	[1.85-2.26] unit decrease	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	1E-11		0.60071	[0.42-0.78] unit increase	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	1E-45		1.84155	[1.58-2.11] unit decrease	NR [9800000] (imputed)	N
746	chr2	21228891	21228892	rs982371659	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Alanine aminotransferase levels	437,724 European ancestry individuals	NA	2p24.1		rs982371659-?	NR	2E-8		0.583553	[0.38-0.79] unit increase	NR [9800000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs12713559-G	0.998788	5E-8		0.312947	[0.2-0.43] unit increase	NR [11722792] (imputed)	N
746	chr2	21229067	21229068	rs12713559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs12713559-G	0.998788	5E-8		0.307853	[0.2-0.42] unit decrease	NR [11722792] (imputed)	N
746	chr2	21229067	21229068	rs12713559	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs12713559-G	0.998788	4E-8		0.317523	[0.2-0.43] unit decrease	NR [11722792] (imputed)	N
746	chr2	21229067	21229068	rs12713559	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs12713559-?	NR	7E-17		0.263203	[0.2-0.33] unit increase	NR [9800000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs12713559-?	NR	8E-20		0.284865	[0.22-0.35] unit increase	NR [9800000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs12713559-?	NR	1E-23		0.300645	[0.24-0.36] unit increase	NR [9800000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs12713559-A	NR	1E-21		0.3502	[0.28-0.42] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs12713559-A	NR	1E-26		0.3912	[0.32-0.46] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21229067	21229068	rs12713559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs12713559-A	NR	7E-28		0.4012	[0.33-0.47] unit increase	Affymetrix [9000000] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - rosuvastatin (UKB data field 20003_1141192410)	2,822 European ancestry cases, 453,454 European ancestry controls	NA	2p24.1		rs5742904-T	2.669E-4	7E-11		8.21	[5.74-10.68] unit increase	NR [11842647] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - ezetimibe (UKB data field 20003_1141192736)	2,667 European ancestry cases, 453,609 European ancestry controls	NA	2p24.1		rs5742904-T	2.646E-4	1E-13		10.35	[7.61-13.09] unit increase	NR [11842647] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - atorvastatin (UKB data field 20003_1141146234)	13,604 European ancestry cases, 442,672 European ancestry controls	NA	2p24.1		rs5742904-T	2.418E-4	2E-20		4.76	[3.76-5.76] unit increase	NR [11842647] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs5742904-?	NR	3E-57		0.84228	[0.73-0.95] unit increase	NR [9800000] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs5742904-?	NR	1E-80		1.00621	[0.9-1.11] unit increase	NR [9800000] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs5742904-?	NR	5E-92		1.04279	[0.94-1.15] unit increase	NR [9800000] (imputed)	N
746	chr2	21229159	21229160	rs5742904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	2p24.1		rs5742904-?	NR	6E-16		0.41292	[0.31-0.52] unit decrease	NR [9800000] (imputed)	N
746	chr2	21229159	21229160	rs5742904	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	LDL cholesterol	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	2p24.1	APOB	rs5742904-?	5.0E-4	6E-34	(EA)	71.0	mg/dl increase	Illumina [247644]	N
746	chr2	21229501	21229502	rs756209187	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p24.1		rs756209187-?	NR	1E-9		1.0459	[0.71-1.38] unit decrease	NR [9800000] (imputed)	N
746	chr2	21229501	21229502	rs756209187	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs756209187-?	NR	6E-14		1.31341	[0.96-1.66] unit decrease	NR [9800000] (imputed)	N
746	chr2	21229501	21229502	rs756209187	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs756209187-?	NR	4E-18		1.5587	[1.21-1.91] unit decrease	NR [9800000] (imputed)	N
746	chr2	21229501	21229502	rs756209187	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs756209187-?	NR	8E-15		1.53221	[1.13-1.93] unit decrease	NR [9800000] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-74		0.0884799	[0.079-0.098] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	5E-86		0.0961203	[0.087-0.106] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-48		0.0715494	[0.062-0.081] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	3E-90		0.0985067	[0.089-0.108] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-38		0.06099	[0.052-0.07] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-107		0.107935	[0.098-0.118] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-40		0.0594639	[0.051-0.068] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	6E-65		0.0833392	[0.074-0.093] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-38		0.0590055	[0.05-0.068] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2p24.1		rs676210-G	0.794219	5E-108		0.104103	[0.095-0.113] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p24.1		rs676210-G	0.794219	2E-53		0.0750024	[0.065-0.085] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs676210-G	0.794219	2E-13		0.0362521	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs676210-G	0.794222	1E-12		0.0330885	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	9E-99		0.103402	[0.094-0.113] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-32		0.0565814	[0.047-0.066] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-111		0.110086	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-48		0.0654973	[0.057-0.074] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	9E-78		0.0909924	[0.081-0.101] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-37		0.0584804	[0.049-0.067] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-52		0.0695041	[0.061-0.078] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-8		0.0280863	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	6E-109		0.109088	[0.099-0.119] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-44		0.0644724	[0.055-0.074] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-113		0.111283	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-38		0.057836	[0.049-0.067] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	5E-88		0.0973343	[0.088-0.107] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	6E-39		0.0588258	[0.05-0.068] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	5E-93		0.0998361	[0.09-0.109] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-39		0.0617362	[0.053-0.071] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-108		0.108268	[0.099-0.118] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-71		0.0872771	[0.078-0.097] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	9E-133		0.124153	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-115		0.114401	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	2E-60		0.0771185	[0.068-0.086] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	6E-140		0.126405	[0.12-0.14] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-55		0.0718603	[0.063-0.081] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	4E-115		0.113224	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-57		0.0749418	[0.066-0.084] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	3E-129		0.120143	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-77		0.0885417	[0.079-0.098] unit increase	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-27		0.0490493	[0.04-0.058] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2p24.1		rs676210-G	0.794234	1E-33		0.0562707	[0.047-0.065] unit decrease	NR [11722792] (imputed)	N
746	chr2	21231523	21231524	rs676210	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very small VLDL	4,734 individuals	NA	2p24.1		rs676210-A	0.21369104	5E-8		0.136444	[0.087-0.185] mmol/l decrease	Illumina [7701709] (imputed)	N
746	chr2	21231523	21231524	rs676210	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs676210-A	NR	3E-12		0.084879	[0.061-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
746	chr2	21231523	21231524	rs676210	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p24.1	APOB	rs676210-G	0.794704	6E-197		0.0734811	[0.069-0.078] unit increase	Affymetrix [NR] (imputed)	N
746	chr2	21231523	21231524	rs676210	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p24.1	APOB	rs676210-G	0.794769	4E-140		0.0592929	[0.055-0.064] unit decrease	Affymetrix [NR] (imputed)	N
746	chr2	21231523	21231524	rs676210	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p24.1	APOB	rs676210-G	0.794905	9E-136		0.0601182	[0.055-0.065] unit decrease	Affymetrix [NR] (imputed)	N
746	chr2	21231523	21231524	rs676210	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p24.1	APOB	rs676210-?	NR	1E-117		0.0745	[0.069-0.08] unit decrease	Affymetrix [5701386] (imputed)	N
746	chr2	21231523	21231524	rs676210	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	2p24.1	APOB	rs676210-?	NR	1E-29		0.01191	[0.0096-0.0142] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
746	chr2	21231523	21231524	rs676210	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs676210-?	NR	2E-10	(M_VLDL_P)	0.06349305	NR unit decrease	Illumina [609262]	N
746	chr2	21231523	21231524	rs676210	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs676210-?	NR	3E-7	(M_VLDL_P)	0.0639099	NR unit decrease	Illumina [609262]	N
746	chr2	21231523	21231524	rs676210	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs676210-?	NR	2E-8		0.02768427	[0.018-0.037] unit decrease	Illumina [31978265] (imputed)	N
746	chr2	21231523	21231524	rs676210	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs676210-?	NR	2E-12		0.9516762	[0.69-1.22] unit increase	Illumina [31978362] (imputed)	N
746	chr2	21231523	21231524	rs676210	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	APOB	rs676210-A	0.2052	5E-63		0.0546	[0.048-0.061] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	NR	7E-72		0.081	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.785	8E-67	(EA)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.757	5E-7	(Hispanic)	0.08	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	NR	9E-12		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.785	2E-17	(EA)	0.047	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	NR	2E-13		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.785	6E-20	(EA)	0.052	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	NR	6E-58		0.066	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.785	1E-50	(EA)	0.069	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs676210-G	0.757	1E-7	(Hispanic)	0.076	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21231523	21231524	rs676210	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Lipid or lipoprotein levels	up to 1,206 European ancestry individuals	NA	2p24.1	APOB	rs676210-?	NR	4E-30	(Oxidized LDL)			Illumina [up to 10879115] (imputed)	N
746	chr2	21231523	21231524	rs676210	23247145	Makela KM	2012-12-17	Circ Cardiovasc Genet	Genome-wide association study pinpoints a new functional apolipoprotein B variant influencing oxidized low-density lipoprotein levels but not cardiovascular events: AtheroRemo Consortium.	LDL (oxidized)	2,080 European ancestry individuals	4,238 European ancestry individuals	2p24.1	apoB	rs676210-G	0.77	3E-47		10.5	U/L increase	Illumina [2543887] (imputed)	N
746	chr2	21231523	21231524	rs676210	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs676210-?	NR	9E-56	(VLDL.total, whole)	6.384	[NR] unit decrease	Illumina [335603]	N
746	chr2	21231523	21231524	rs676210	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs676210-?	NR	4E-64	(VLDL.small, whole)	4.219	[NR] unit decrease	Illumina [335603]	N
746	chr2	21231523	21231524	rs676210	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs676210-?	NR	2E-9	(TG.assay, fasting)	0.047	[NR] unit decrease	Illumina [335603]	N
746	chr2	21231591	21231592	rs6413458	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	2p24.1	APOB	rs6413458-T	0.02	2E-7	(mass)	0.0398	[0.0088-0.0708] ng/ml decrease	Illumina [796174]	N
746	chr2	21232175	21232176	rs121918390	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p24.1		rs121918390-?	NR	2E-17		1.47244	[1.12-1.82] unit decrease	NR [9800000] (imputed)	N
746	chr2	21232175	21232176	rs121918390	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs121918390-?	NR	6E-27		1.92027	[1.55-2.29] unit decrease	NR [9800000] (imputed)	N
746	chr2	21232175	21232176	rs121918390	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs121918390-?	NR	3E-35		2.23769	[1.87-2.6] unit decrease	NR [9800000] (imputed)	N
746	chr2	21232175	21232176	rs121918390	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs121918390-?	NR	2E-39		2.70828	[2.29-3.13] unit decrease	NR [9800000] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	3E-110		0.0918839	[0.084-0.1] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	4E-65		0.0686484	[0.061-0.077] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	5E-63		0.0676386	[0.06-0.076] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	6E-70		0.0712049	[0.063-0.079] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	3E-99		0.0854519	[0.078-0.093] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-78		0.0775471	[0.069-0.086] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs693-G	0.479136	7E-44		0.056605	[0.049-0.065] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs693-G	0.479136	5E-32		0.0479441	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-78		0.0769739	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	4E-105		0.0885098	[0.081-0.096] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs693-G	0.479136	2E-49		0.0592017	[0.051-0.067] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-107		0.0891105	[0.081-0.097] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	5E-131		0.100157	[0.092-0.108] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	3E-113		0.0931677	[0.085-0.101] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	2p24.1		rs693-G	0.479136	1E-50		0.060697	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	3E-101		0.0863359	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-125		0.0983249	[0.09-0.106] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	1E-116		0.0947314	[0.087-0.103] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	5E-100		0.0861553	[0.078-0.094] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	1E-104		0.0897541	[0.082-0.098] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-111		0.0923138	[0.084-0.1] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-90		0.0835462	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	4E-112		0.0920843	[0.084-0.1] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	8E-108		0.0910118	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	1E-132		0.100831	[0.093-0.109] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	1E-87		0.0820336	[0.074-0.09] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	3E-91		0.0829135	[0.075-0.091] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-82		0.0794864	[0.071-0.088] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-112		0.0930379	[0.085-0.101] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	7E-132		0.100724	[0.093-0.109] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	5E-84		0.0802972	[0.072-0.088] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-107		0.0907342	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	7E-77		0.076776	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	2p24.1		rs693-G	0.479111	2E-100		0.0877224	[0.08-0.096] unit decrease	NR [11722792] (imputed)	N
746	chr2	21232194	21232195	rs693	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs693-?	NR	1E-7		0.02378812	[0.015-0.033] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21232194	21232195	rs693	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs693-?	NR	4E-13		2.828003	[2.07-3.59] unit increase	Illumina [32003504] (imputed)	N
746	chr2	21232194	21232195	rs693	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs693-?	NR	2E-17		2.939653	[2.26-3.62] unit increase	Illumina [31808917] (imputed)	N
746	chr2	21232194	21232195	rs693	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs693-?	NR	1E-6		0.5936694	[0.35-0.83] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21232194	21232195	rs693	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	2p24.1	APOB	rs693-G	0.52	4E-17		0.1	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
746	chr2	21232194	21232195	rs693	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	2p24.1	APOB	rs693-G	0.52	9E-23		0.1	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
746	chr2	21232194	21232195	rs693	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	LDL cholesterol	4,763 Northern Finnish founder individuals	NA	2p24.1	APOB	rs693-A	0.41	3E-11		0.12	[0.09-0.16] mmol/l increase	Illumina [329091]	N
746	chr2	21232194	21232195	rs693	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	2p24.1	APOB	rs693-A	0.48	2E-7		0.08	[0.04-0.12] unit increase	Affymetrix [389878]	N
746	chr2	21232194	21232195	rs693	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	LDL cholesterol	2,758 European ancestry individuals	18,544 European ancestry individuals	2p24.1	APOB	rs693-A	0.48	1E-21		0.12	[0.10-0.14] unit increase	Affymetrix [389878]	N
746	chr2	21232194	21232195	rs693	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	LDL cholesterol levels	2,601 European ancestry type 2 diabetes cases and controls	NA	2p24.1	APOB	rs693-A	0.49	7E-7		1.0	(% variance) increase	Affymetrix [389878]	N
746	chr2	21232803	21232804	rs1041968	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs1041968-?	NR	1E-7		0.02369624	[0.015-0.032] unit increase	Illumina [31978265] (imputed)	N
746	chr2	21232803	21232804	rs1041968	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs1041968-?	NR	5E-13		2.812376	[2.05-3.57] unit increase	Illumina [32003504] (imputed)	N
746	chr2	21232803	21232804	rs1041968	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs1041968-?	NR	2E-17		2.932701	[2.26-3.61] unit increase	Illumina [31808917] (imputed)	N
746	chr2	21232803	21232804	rs1041968	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs1041968-?	NR	1E-6		0.596959	[0.36-0.84] unit decrease	Illumina [31978362] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	NR	4E-41		0.052	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.511	1E-35	(EA)	0.051	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	NR	7E-104		0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.675	5E-7	(Hispanic)	0.085	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.511	3E-94	(EA)	0.094	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	NR	7E-116		0.101	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.675	2E-8	(Hispanic)	0.095	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.511	8E-105	(EA)	0.102	unit decrease	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	NR	3E-18		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1041968-G	0.511	4E-15	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
746	chr2	21232803	21232804	rs1041968	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	2p24.1	APOB	rs1041968-A	0.48	5E-54		0.095	[0.083-0.107] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	2E-67		0.1065	[0.095-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	1E-102		0.132	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	1E-155		0.1631	[0.15-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	1E-43		0.0889	[0.076-0.101] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	2E-316		0.2335	[0.22-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-C	NR	2E-47		0.0931	[0.081-0.106] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	NR	1E-26		0.108	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	0.96	2E-25	(EA)	0.109	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	NR	4E-32		0.133	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	0.96	2E-30	(EA)	0.133	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	NR	2E-39		0.151	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	0.96	4E-37	(EA)	0.151	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	NR	7E-21		0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233971	21233972	rs533617	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs533617-T	0.96	9E-20	(EA)	0.087	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21233998	21233999	rs1801699	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs1801699-T	0.980614	4E-8		0.0809956	[0.052-0.11] unit increase	NR [11722792] (imputed)	N
747	chr2	21233998	21233999	rs1801699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs1801699-C	NR	2E-11		0.0583	[0.041-0.075] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21233998	21233999	rs1801699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs1801699-C	NR	9E-16		0.0696	[0.053-0.087] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21233998	21233999	rs1801699	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p24.1	NR	rs1801699-C	NR	2E-15		0.0717	[0.054-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p24.1		rs673548-G	0.793911	2E-18		0.0428037	[0.033-0.052] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2p24.1		rs673548-G	0.793911	1E-38		0.0632408	[0.054-0.073] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	2E-64		0.0840744	[0.074-0.094] unit increase	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	2E-33		0.0582136	[0.049-0.068] unit increase	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	4E-44		0.0627809	[0.054-0.072] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	2E-29		0.0502503	[0.042-0.059] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	5E-26		0.0504139	[0.041-0.06] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	1E-37		0.0575828	[0.049-0.066] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	4E-67		0.0836796	[0.074-0.093] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs673548-G	0.793925	5E-38		0.0577476	[0.049-0.067] unit decrease	NR [11722792] (imputed)	N
747	chr2	21237543	21237544	rs673548	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	2p24.1		rs673548-A	0.215583764798365	2E-12		0.0364258	[0.026-0.047] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21237543	21237544	rs673548	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	2p24.1		rs673548-A	0.215583764798365	1E-10	(EA)	0.0381621	[0.027-0.05] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21237543	21237544	rs673548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	2p24.1		rs673548-A	NR	3E-12		0.0845366	[0.061-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	1E-173		0.082	[0.076-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	1E-55		0.0459	[0.04-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	5E-112		0.0657	[0.06-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	2E-119		0.071	[0.065-0.077] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	6E-219		0.0924	[0.087-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-A	NR	3E-117		0.0705	[0.064-0.077] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs673548-?	NR	9E-12	(XS_VLDL_TG)	0.068695925	NR unit decrease	Illumina [609262]	N
747	chr2	21237543	21237544	rs673548	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs673548-?	NR	2E-8	(S_VLDL_P)	0.05945241	NR unit decrease	Illumina [609262]	N
747	chr2	21237543	21237544	rs673548	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs673548-?	NR	6E-10	(S_VLDL_P)	0.0776248	NR unit decrease	Illumina [609262]	N
747	chr2	21237543	21237544	rs673548	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs673548-?	NR	1E-12	(XS_VLDL_TG)	0.08938208	NR unit decrease	Illumina [609262]	N
747	chr2	21237543	21237544	rs673548	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2p24.1	APOB	rs673548-A	0.204049	2E-32		0.0977899	[0.082-0.114] unit decrease	Affymetrix [9463307] (imputed)	N
747	chr2	21237543	21237544	rs673548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs673548-?	NR	4E-7		0.02367532	[0.015-0.033] unit decrease	Illumina [31978265] (imputed)	N
747	chr2	21237543	21237544	rs673548	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	2p24.1	NR	rs673548-?	NR	3E-9		0.7666658	[0.51-1.02] unit increase	Illumina [31978362] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	NR	1E-69		0.079	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.785	4E-66	(EA)	0.086	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.754	8E-7	(Hispanic)	0.078	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	NR	1E-11		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.785	1E-17	(EA)	0.048	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	NR	1E-13		0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.785	3E-20	(EA)	0.053	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	NR	1E-56		0.065	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.785	8E-51	(EA)	0.069	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs673548-G	0.754	3E-7	(Hispanic)	0.074	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21237543	21237544	rs673548	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Triglycerides	3,681 individuals	NA	2p24.1	APOB	rs673548-A	0.221	2E-6		0.053	[0.031-0.075] unit decrease	Illumina [101597]	N
747	chr2	21237543	21237544	rs673548	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	2p24.1	APOB	rs673548-?	0.27	1E-13				Illumina [~ 2000000] (imputed)	N
747	chr2	21237543	21237544	rs673548	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	2p24.1	APOB	rs673548-G	0.73	1E-10	(HDL)	0.11	[NR] mmol/l decrease	Illumina [1257079] (imputed)	N
747	chr2	21237543	21237544	rs673548	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs673548-?	NR	5E-42	(VLDL.total, fasting)	6.624	[NR] unit decrease	Illumina [335603]	N
747	chr2	21237543	21237544	rs673548	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs673548-?	NR	4E-10	(TG.assay, whole)	0.041	[NR] unit decrease	Illumina [335603]	N
747	chr2	21237543	21237544	rs673548	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	2p24.1	APOB	rs673548-A	0.27	2E-8	(TG)	0.08	[0.05-0.11] mmol/l decrease	Illumina [329091]	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	4E-17		0.0346972	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	1E-21		0.0397114	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	5E-9		0.0235948	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	4E-9		0.0236971	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	3E-12		0.0281101	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	3E-15		0.0326198	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	2E-19		0.0375217	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	2E-17		0.0341071	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	4E-21		0.0391435	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	7E-18		0.0357925	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	6E-16		0.0336022	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	2E-9		0.0246965	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	5E-12		0.0284395	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	4E-13		0.0299648	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	4E-17		0.0348009	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	1E-20		0.0374895	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	2E-19		0.0371924	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239861	21239862	rs74410908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs74410908-T	0.48031	1E-16		0.0340039	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
747	chr2	21239865	21239866	rs150856817	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs150856817-?	NR	7E-23		2.742	[2.17-3.32] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21240030	21240031	rs11680233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p24.1	APOB	rs11680233-C	0.715436	9E-11		0.016191924	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr2	21240030	21240031	rs11680233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs11680233-C	0.619281	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
747	chr2	21240030	21240031	rs11680233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p24.1	NR	rs11680233-C	0.715009	1E-11		0.013763	[0.0098-0.0177] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
747	chr2	21240363	21240364	rs11126598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p24.1	APOB	rs11126598-G	0.712041	1E-12		0.017617486	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr2	21241504	21241505	rs12713956	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs12713956-?	NR	7E-14		3.480172	[2.57-4.39] unit decrease	Illumina [32003504] (imputed)	N
747	chr2	21241504	21241505	rs12713956	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs12713956-?	NR	6E-16		3.362497	[2.55-4.18] unit decrease	Illumina [31808917] (imputed)	N
747	chr2	21241504	21241505	rs12713956	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	2p24.1	APOB	rs12713956-G	0.183	4E-8	(AA)	4.86	[NR] unit decrease	Affymetrix [NR]	N
747	chr2	21242612	21242613	rs41288783	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs41288783-?	NR	2E-32		0.329878	[0.27-0.39] unit increase	NR [9800000] (imputed)	N
747	chr2	21242612	21242613	rs41288783	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs41288783-?	NR	6E-38		0.359237	[0.3-0.42] unit increase	NR [9800000] (imputed)	N
747	chr2	21242612	21242613	rs41288783	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs41288783-?	NR	5E-39		0.352423	[0.3-0.41] unit increase	NR [9800000] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	2E-11		0.4087	[0.29-0.53] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.034672466	2E-11		0.40871882	[0.29-0.53] unit increase	Illumina [13425416] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	2p24.1		rs13306206-A	0.036752	5E-111		0.232431	[0.21-0.25] unit increase	Illumina [13476599] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.034672466	5E-19		0.320915	[0.25-0.39] unit increase	Illumina [13427711] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	5E-19		0.3209	[0.25-0.39] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	5E-33		0.4869	[0.41-0.57] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.034672466	5E-33		0.4868617	[0.41-0.57] unit increase	Illumina [13427135] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	4E-10		0.2211	[0.15-0.29] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.03632796	4E-10		0.22107062	[0.15-0.29] unit increase	Illumina [13429980] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	3E-118		0.6431	[0.59-0.7] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.03632796	3E-118		0.64306116	[0.59-0.7] unit increase	Illumina [13429980] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	2p24.1		rs13306206-A	0.039071	7E-124		0.320185	[0.29-0.35] unit increase	Illumina [13461863] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2p24.1		rs13306206-A	NR	4E-16		0.3296	[0.25-0.41] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
747	chr2	21242730	21242731	rs13306206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2p24.1		rs13306206-A	0.034644899	4E-16		0.32959867	[0.25-0.41] unit increase	Illumina [13426705] (imputed)	N
747	chr2	21242730	21242731	rs13306206	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2p24.1	APOB	rs13306206-?	NR	5E-35		0.324647	[0.27-0.38] unit increase	Illumina [19707525] (imputed)	N
747	chr2	21243999	21244000	rs10199768	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	2p24.1	APOB	rs10199768-T	0.47	8E-15	(LDL)	0.11	[0.083-0.137] mmol/l increase	Illumina [NR] (imputed)	N
747	chr2	21244357	21244358	rs11676704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p24.1	NR	rs11676704-G	NR	6E-28		0.0344	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21244357	21244358	rs11676704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p24.1	NR	rs11676704-G	NR	1E-19		0.0298	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21244357	21244358	rs11676704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p24.1	NR	rs11676704-G	NR	6E-18		0.0283	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21245888	21245889	rs12714097	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs12714097-?	NR	4E-10		0.339709	[0.22-0.46] unit decrease	NR [9800000] (imputed)	N
747	chr2	21247064	21247065	rs57825321	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p24.1	NR	rs57825321-?	NR	8E-32		0.07307	[0.061-0.085] unit decrease novel	Illumina [6108953] (imputed)	N
747	chr2	21247064	21247065	rs57825321	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	2p24.1	NR	rs57825321-?	NR	4E-30		0.09537	[0.079-0.112] unit decrease novel	Illumina [6108953] (imputed)	N
747	chr2	21249715	21249716	rs12691202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs12691202-T	NR	4E-85		0.1214	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21249715	21249716	rs12691202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs12691202-T	NR	4E-99		0.1314	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21249715	21249716	rs12691202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs12691202-T	NR	2E-143		0.1587	[0.15-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21250222	21250223	rs11901649	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	2p24.1	APOB	rs11901649-G	NR	1E-8		1.0331372	[1.0217-1.0445]	Affymetrix, Illumina [up to 7600000] (imputed)	N
747	chr2	21250222	21250223	rs11901649	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Barrett's esophagus  or Esophageal adenocarcinoma	8,998 European and unknown ancestry Barrett's esophagus cases, 4,680 European and unknown ancestry esophageal adenocarcinoma cases, 19,247 European and unknown ancestry controls	NA	2p24.1	APOB	rs11901649-?	NR	1E-7		0.084	[0.053-0.115] unit increase	Affymetrix [up to 7600000] (imputed)	N
747	chr2	21250913	21250914	rs679899	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KCNMB3	5,357 Icelandic ancestry individuals	NA	2p24.1		rs679899-A	0.4898	5E-27		0.193886	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
747	chr2	21250913	21250914	rs679899	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p24.1	NR	rs679899-G	0.503125	6E-24	(APOB, 2797_56_2)	0.24644051	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
747	chr2	21250913	21250914	rs679899	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p24.1	NR	rs679899-G	0.503125	6E-13	(LRP1B, 7640_29_3)	0.1736701	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
747	chr2	21250913	21250914	rs679899	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p24.1	NR	rs679899-G	0.503125	1E-21	(SLC5A8, 13691_10_3)	0.23186418	[0.18-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
747	chr2	21250913	21250914	rs679899	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p24.1	NR	rs679899-G	0.503125	1E-14	(KCNMB3, 8905_20_3)	0.18513301	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
747	chr2	21252533	21252534	rs13306194	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p24.1	APOB	rs13306194-A	0.124	4E-6		4.1917	[2.41-5.97] unit decrease	Affymetrix [at least 805769] (imputed)	N
747	chr2	21252533	21252534	rs13306194	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total cholesterol levels	12,685 Chinese ancestry individuals	NA	2p24.1	APOB	rs13306194-A	0.128	6E-12		0.13	[0.091-0.169] unit decrease	Illumina [286795]	N
747	chr2	21252533	21252534	rs13306194	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	LDL cholesterol levels	12,685 Chinese ancestry individuals	NA	2p24.1	APOB	rs13306194-A	0.128	1E-12		0.13	[0.091-0.169] unit decrease	Illumina [286795]	N
747	chr2	21255262	21255263	rs142066904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p24.1		rs142066904-?	NR	5E-19		0.899135	[0.7-1.1] unit decrease	NR [9800000] (imputed)	N
747	chr2	21255262	21255263	rs142066904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs142066904-?	NR	4E-34		1.20603	[1-1.42] unit decrease	NR [9800000] (imputed)	N
747	chr2	21255262	21255263	rs142066904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs142066904-?	NR	1E-44		1.42115	[1.21-1.63] unit decrease	NR [9800000] (imputed)	N
747	chr2	21255262	21255263	rs142066904	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs142066904-?	NR	3E-19		1.06228	[0.82-1.31] unit decrease	NR [9800000] (imputed)	N
747	chr2	21256167	21256168	rs371993628	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs371993628-?	NR	5E-12		1.14016	[0.81-1.47] unit decrease	NR [9800000] (imputed)	N
747	chr2	21256167	21256168	rs371993628	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs371993628-?	NR	8E-16		1.28302	[0.95-1.61] unit decrease	NR [9800000] (imputed)	N
747	chr2	21256167	21256168	rs371993628	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs371993628-?	NR	5E-17		1.43454	[1.08-1.79] unit decrease	NR [9800000] (imputed)	N
747	chr2	21257696	21257697	rs72653060	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	APOB	rs72653060-C	0.0014	9E-11	(AA)	0.519	[0.36-0.68] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
747	chr2	21257926	21257927	rs12720842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs12720842-C	NR	1E-39		0.0841	[0.072-0.097] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21257926	21257927	rs12720842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs12720842-C	NR	3E-42		0.087	[0.074-0.1] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21257926	21257927	rs12720842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs12720842-C	NR	5E-34		0.0778	[0.065-0.09] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21259611	21259612	rs520354	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs520354-A	0.534585	1E-9		0.0243228	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
747	chr2	21259611	21259612	rs520354	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1B	5,366 Icelandic ancestry individuals	NA	2p24.1		rs520354-G	0.4905	1E-20		0.175419	[0.14-0.21] unit increase	Illumina [7506463] (imputed)	N
747	chr2	21259611	21259612	rs520354	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOB	5,366 Icelandic ancestry individuals	NA	2p24.1		rs520354-G	0.4905	5E-32		0.221255	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
747	chr2	21259611	21259612	rs520354	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p24.1	APOB, AC010872.1	rs520354-G	0.4733936	7E-13	(EA, Apolipoprotein B)	0.3033	[0.22-0.38] unit increase	Affymetrix [509946]	N
747	chr2	21260600	21260601	rs550619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs550619-A	NR	7E-123		0.1018	[0.093-0.11] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21260600	21260601	rs550619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs550619-A	NR	2E-132		0.1058	[0.097-0.114] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21260600	21260601	rs550619	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs550619-A	NR	9E-154		0.1143	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21260933	21260934	rs6752026	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs6752026-?	NR	9E-6		3.473921	[1.94-5.01] unit decrease	Illumina [31808917] (imputed)	N
747	chr2	21260957	21260958	rs766243954	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p24.1		rs766243954-?	NR	3E-29		2.26295	[1.87-2.66] unit decrease	NR [9800000] (imputed)	N
747	chr2	21260957	21260958	rs766243954	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p24.1		rs766243954-?	NR	8E-33		2.46518	[2.05-2.88] unit decrease	NR [9800000] (imputed)	N
747	chr2	21260957	21260958	rs766243954	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p24.1		rs766243954-?	NR	3E-37		2.624	[2.21-3.04] unit decrease	NR [9800000] (imputed)	N
747	chr2	21260957	21260958	rs766243954	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein B levels	435,744 European ancestry individuals	NA	2p24.1		rs766243954-?	NR	4E-25		2.75188	[2.2-3.3] unit decrease	NR [9800000] (imputed)	N
747	chr2	21261997	21261998	rs12720796	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	APOB	rs12720796-A	0.980336	8E-12		0.0509845	[0.036-0.066] unit decrease	Affymetrix [NR] (imputed)	N
747	chr2	21262426	21262427	rs597331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs597331-G	0.539864	1E-9		0.0241464	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
747	chr2	21263885	21263886	rs9282603	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	APOB	rs9282603-G	0.0038	2E-10	(AA)	0.316	[0.22-0.41] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs1367117-G	0.664587	2E-37		0.0537218	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
747	chr2	21263899	21263900	rs1367117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p24.1		rs1367117-A	NR	4E-247		0.0803	[0.076-0.085] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
747	chr2	21263899	21263900	rs1367117	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	2p24.1		rs1367117-A	0.314	9E-40		1.2		Affymetrix [15679186] (imputed)	N
747	chr2	21263899	21263900	rs1367117	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p24.1	APOB	rs1367117-?		1E-49		0.074	[0.064-0.084] unit decrease	Illumina [31500000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p24.1	APOB	rs1367117-?		2E-60		0.09	[0.079-0.101] unit decrease	Illumina [31500000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs1367117-?	NR	1E-80		3.414	[3.03-3.79] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21263899	21263900	rs1367117	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p24.1	APOB	rs1367117-?	NR	1E-9	(S_LDL_P)	0.04359237	NR unit increase	Illumina [609262]	N
747	chr2	21263899	21263900	rs1367117	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p24.1	NR	rs1367117-?	NR	7E-8		0.0269989	[0.017-0.037] unit increase	Illumina [31978265] (imputed)	N
747	chr2	21263899	21263900	rs1367117	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs1367117-?	NR	4E-22		4.138443	[3.3-4.98] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21263899	21263900	rs1367117	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs1367117-?	NR	3E-27		4.134983	[3.39-4.88] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21263899	21263900	rs1367117	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p24.1	APOB	rs1367117-A	0.337599	9E-72		0.10572609	[0.094-0.117] unit increase	Affymetrix [7288503] (imputed)	N
747	chr2	21263899	21263900	rs1367117	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	2p24.1		rs1367117-A	0.2888	3E-64		3.0777	[2.72-3.43] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
747	chr2	21263899	21263900	rs1367117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p24.1		rs1367117-?	NR	2E-17				NR [~ 8900000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	NR	1E-16		0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	0.688	3E-14	(EA)	0.034	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	NR	2E-125		0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	0.723	4E-11	(Hispanic)	0.11	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	0.688	5E-109	(EA)	0.109	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	NR	1E-144		0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	0.723	5E-14	(Hispanic)	0.126	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	0.688	7E-125	(EA)	0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs1367117-G	NR	3E-6		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21263899	21263900	rs1367117	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	2p24.1	NR	rs1367117-?	NR	2E-10		0.06198	[0.043-0.081] unit increase novel	Illumina [6108953] (imputed)	N
747	chr2	21263899	21263900	rs1367117	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2p24.1	APOB	rs1367117-A	0.288	3E-136	(Trans-ethnic initial)	0.0995	[0.092-0.107] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2p24.1	APOB	rs1367117-A	0.288	2E-179	(Trans-ethnic initial)	0.119	[0.11-0.13] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p24.1	APOB	rs1367117-A	0.32	1E-182		0.119	[NR] unit increase	NR [NR] (imputed)	N
747	chr2	21263899	21263900	rs1367117	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p24.1	APOB	rs1367117-A	0.32	3E-139		0.1	[NR] unit increase	NR [NR] (imputed)	N
747	chr2	21263899	21263900	rs1367117	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	2p24.1	APOB	rs1367117-A	0.3	4E-114		4.05	[3.68-4.42] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p24.1	APOB	rs1367117-A	0.3	4E-96		4.16	[3.73-4.59] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
747	chr2	21263899	21263900	rs1367117	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs1367117-?	NR	6E-25	(LDL-C.assay, whole)	4.027	[NR] unit increase	Illumina [335603]	N
747	chr2	21263899	21263900	rs1367117	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs1367117-?	NR	2E-17	(LDL-C.assay, fasting)	3.916	[NR] unit increase	Illumina [335603]	N
747	chr2	21265140	21265141	rs661665	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p24.1	APOB	rs661665-A	0.5	3E-11		6.64	z-score increase	Affymetrix [4311822] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p24.1		rs934197-G	0.663947	8E-33		0.0503987	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs934197-G	0.664302	1E-64		0.0738093	[0.065-0.082] unit increase	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p24.1		rs934197-G	0.663947	2E-60		0.0716676	[0.063-0.08] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p24.1		rs934197-G	0.663947	2E-30		0.0485121	[0.04-0.057] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs934197-G	0.664302	2E-44		0.0605181	[0.052-0.069] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs934197-G	0.664312	1E-49		0.063764	[0.055-0.072] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs934197-G	0.664302	1E-37		0.0536289	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs934197-G	0.664312	1E-13		0.0324316	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs934197-G	0.664302	2E-47		0.0616466	[0.053-0.07] unit decrease	NR [11722792] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very small VLDL particle concentration	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	8E-9		0.131607	[0.087-0.176] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very small VLDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	8E-10		0.140193	[0.096-0.185] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	9E-12		0.155477	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	2E-12		0.160886	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in large LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	2E-13		0.167626	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in IDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	8E-14		0.170114	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very small VLDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	2E-12		0.161169	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	1E-12		0.162526	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in medium LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	5E-13		0.164523	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in large LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	1E-13		0.169575	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	2E-13		0.167443	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in IDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317617119	3E-14		0.173174	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial sphingomyelins	4,348 individuals	NA	2p24.1		rs934197-A	0.316851575	2E-10		0.145978	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small LDL particle concentration	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	1E-11		0.15406	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial serum total cholesterol	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	2E-11		0.152315	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very small VLDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	8E-12		0.155994	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	5E-9		0.133459	[0.089-0.178] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	2E-10		0.144527	[0.1-0.189] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in large LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	4E-13		0.165674	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in IDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317617119	3E-14		0.173347	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium LDL particle concentration	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	2E-12		0.159775	[0.12-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial large LDL particle concentration	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	3E-13		0.166268	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very small VLDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	6E-12		0.156947	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	4E-11		0.150981	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	3E-12		0.158775	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in large LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	3E-14		0.173449	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in IDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317617119	1E-14		0.175374	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol	4,348 individuals	NA	2p24.1		rs934197-A	0.316672651	3E-12		0.160969	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial esterified cholesterol	4,348 individuals	NA	2p24.1		rs934197-A	0.316489724	3E-11		0.152964	[0.11-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very small VLDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	2E-12		0.160291	[0.12-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in small LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	5E-13		0.164813	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in medium LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317774097	3E-13		0.165838	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in large LDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	2E-13		0.167416	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in IDL	4,348 individuals	NA	2p24.1		rs934197-A	0.317617119	1E-13		0.169563	[0.13-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial IDL particle concentration	4,348 individuals	NA	2p24.1		rs934197-A	0.317701012	1E-13		0.168427	[0.12-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	6E-10		0.135203	[0.092-0.178] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	3E-10		0.138055	[0.095-0.181] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	3E-11		0.145625	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in IDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	2E-11		0.145718	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very small VLDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318095097	7E-9		0.126697	[0.084-0.169] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	1E-10		0.141165	[0.098-0.184] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in medium LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	1E-10		0.14107	[0.098-0.184] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	1E-11		0.148307	[0.11-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	3E-11		0.145385	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in IDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31808543	1E-11		0.14828	[0.11-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small LDL particle concentration	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	8E-10		0.13421	[0.091-0.177] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting serum total cholesterol	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	7E-10		0.134665	[0.092-0.177] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very small VLDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318095097	1E-8		0.124326	[0.082-0.167] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	4E-8		0.120432	[0.078-0.163] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	3E-9		0.130142	[0.087-0.173] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	4E-11		0.144244	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in IDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31808543	4E-11		0.144576	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium LDL particle concentration	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	3E-10		0.137214	[0.094-0.18] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large LDL particle concentration	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	4E-11		0.14426	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very small VLDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318095097	1E-8		0.124717	[0.082-0.167] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	1E-9		0.132206	[0.089-0.175] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	4E-10		0.136432	[0.094-0.179] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	4E-12		0.151244	[0.11-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in IDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31808543	1E-11		0.148705	[0.11-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol	4,734 individuals	NA	2p24.1		rs934197-A	0.318248466	4E-10		0.136324	[0.094-0.179] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting esterified cholesterol	4,734 individuals	NA	2p24.1		rs934197-A	0.318113656	2E-9		0.131143	[0.088-0.174] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very small VLDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318095097	8E-9		0.126153	[0.083-0.169] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in small LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.3179797	5E-11		0.143528	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in medium LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.318056648	7E-11		0.142585	[0.1-0.185] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large LDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	2E-11		0.146805	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in IDL	4,734 individuals	NA	2p24.1		rs934197-A	0.31808543	2E-11		0.146817	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting IDL particle concentration	4,734 individuals	NA	2p24.1		rs934197-A	0.31796071	5E-11		0.143683	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21267460	21267461	rs934197	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		2p24.1	APOB	rs934197-G	NR	5E-21		0.0134	[0.0091-0.0177] nmol/l decrease	NR [19000000] (imputed)	N
747	chr2	21267460	21267461	rs934197	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p24.1	APOB	rs934197-G	0.664558	9E-312		0.0831886	[0.079-0.088] unit decrease	Affymetrix [NR] (imputed)	N
747	chr2	21267460	21267461	rs934197	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs934197-?	NR	3E-78		3.395	[3.01-3.78] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21267781	21267782	rs512535	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2p24.1	APOB	rs512535-?	NR	1E-6		0.060281	[0.036-0.085] unit decrease	Illumina [19707525] (imputed)	N
747	chr2	21269808	21269809	rs589566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs589566-A	0.493767	2E-22		0.0404836	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
747	chr2	21270056	21270057	rs588245	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs588245-A	0.493311	9E-10		0.0251826	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
747	chr2	21270553	21270554	rs585967	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2p24.1	APOB	rs585967-C	0.844	3E-8		1.07	[1.04-1.09]	Affymetrix [9149595] (imputed)	N
747	chr2	21271322	21271323	rs1713222	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Response to statins (LDL cholesterol change)	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	2p24.1	APOB	rs1713222-A	0.145	5E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix [13250765] (imputed)	N
747	chr2	21271322	21271323	rs1713222	31969989	Oni-Orisan A	2020-01-16	NPJ Genom Med	The impact of adjusting for baseline in pharmacogenomic genome-wide association studies of quantitative change.	Low density lipoprotein cholesterol levels	28,616 European ancestry individuals, 1,205 African ancestry individuals, 2,350 East Asian ancestry individuals, 2,703 Hispanic/Latino individuals	NA	2p24.1	APOB	rs1713222-A	0.145	1E-26		0.027	[0.021-0.033] unit decrease	Affymetrix [13250765] (imputed)	N
747	chr2	21272777	21272778	rs60403635	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	APOB	rs60403635-T	0.956951	9E-112		0.114956	[0.1-0.12] unit increase	Affymetrix [NR] (imputed)	N
747	chr2	21272777	21272778	rs60403635	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs60403635-?	NR	2E-23		3.847	[3-4.7] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21273489	21273490	rs7575840	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	2p24.1		rs7575840-T	0.33	3E-23		3.19	[2.56-3.82] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
747	chr2	21273489	21273490	rs7575840	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		2p24.1		rs7575840-T	0.33	4E-28		3.26	[2.67-3.85] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
747	chr2	21273489	21273490	rs7575840	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	2p24.1	NR	rs7575840-?	NR	4E-18		0.129	[0.1-0.158] unit increase	Illumina [1770809] (imputed)	N
747	chr2	21274166	21274167	rs13011615	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2p24.1	NR	rs13011615-?	NR	6E-19	(Free cholesterol in large LDL, conditioned)	0.1247424	[0.097-0.152] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
747	chr2	21276007	21276008	rs72902579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs72902579-C	NR	4E-63		0.0966	[0.085-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21276007	21276008	rs72902579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs72902579-C	NR	2E-77		0.1073	[0.096-0.119] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21276007	21276008	rs72902579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs72902579-C	NR	4E-123		0.1362	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21278772	21278773	rs934198	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs934198-G	0.652033	1E-34		0.0513509	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
747	chr2	21278772	21278773	rs934198	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs934198-?	NR	3E-19		3.75396	[2.93-4.57] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21278772	21278773	rs934198	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs934198-?	NR	2E-25		3.89272	[3.16-4.62] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	NR	6E-11		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	0.677	3E-9	(EA)	0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	NR	3E-101		0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	0.716	2E-8	(Hispanic)	0.092	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	0.677	3E-88	(EA)	0.097	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	NR	1E-115		0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	0.716	2E-10	(Hispanic)	0.106	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21278772	21278773	rs934198	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs934198-G	0.677	3E-100	(EA)	0.107	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs515135-T	0.18081	1E-38		0.0674502	[0.057-0.078] unit decrease	NR [11722792] (imputed)	N
747	chr2	21286056	21286057	rs515135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p24.1		rs515135-C	0.819926	3E-10		0.018069103	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr2	21286056	21286057	rs515135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p24.1		rs515135-C	0.819944	1E-9		0.017346524	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr2	21286056	21286057	rs515135	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs515135-?	NR	7E-12		2.774797	[1.98-3.57] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21286056	21286057	rs515135	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs515135-?	NR	1E-16		3.018563	[2.31-3.73] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21286056	21286057	rs515135	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	2p24.1		rs515135-T	0.1866	1E-56	(EA)	3.7366	[3.27-4.2] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
747	chr2	21286056	21286057	rs515135	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	2p24.1	APOB	rs515135-T	0.18	8E-8		0.0487	[0.047-0.05] unit decrease	Affymetrix, Illumina [9574088] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	NR	9E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	NR	3E-112		0.119	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	0.196	5E-10	(Hispanic)	0.117	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	0.192	2E-115	(EA)	0.132	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	NR	3E-124		0.128	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	0.196	2E-11	(Hispanic)	0.128	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs515135-T	0.192	1E-125	(EA)	0.141	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21286056	21286057	rs515135	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2p24.1	intergenic	rs515135-T	0.1837	6E-17		0.0555	[0.043-0.068] unit decrease	Affymetrix [at least 7947838] (imputed)	N
747	chr2	21286056	21286057	rs515135	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	2p24.1	APOB	rs515135-C	0.83	2E-63		0.135	[0.12-0.15] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
747	chr2	21286056	21286057	rs515135	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	LDL cholesterol	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p24.1	APOB	rs515135-A	0.19	2E-20		0.04	[0.03-0.05] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
747	chr2	21286056	21286057	rs515135	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p24.1	APOB	rs515135-T	0.20	5E-29		0.16	[0.12-0.20] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
747	chr2	21288225	21288226	rs563290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs563290-G	0.180537	5E-109		0.112522	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288225	21288226	rs563290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs563290-G	0.180537	3E-78		0.0932491	[0.083-0.103] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288225	21288226	rs563290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs563290-G	0.180537	8E-30		0.0566223	[0.047-0.066] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288225	21288226	rs563290	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs563290-G	0.180537	1E-33		0.0582859	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288225	21288226	rs563290	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium LDL	4,348 individuals	NA	2p24.1		rs563290-A	0.832387854	1E-8		0.163636	[0.11-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21288225	21288226	rs563290	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p24.1		rs563290-A	NR	8E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
747	chr2	21288225	21288226	rs563290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs563290-A	0.845276	3E-11				Affymetrix, Illumina [24653286] (imputed)	N
747	chr2	21288225	21288226	rs563290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p24.1	NR	rs563290-A	0.817876	2E-12		0.016813	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
747	chr2	21288225	21288226	rs563290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p24.1	NR	rs563290-A	0.81772	5E-11		0.015715	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
747	chr2	21288225	21288226	rs563290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs563290-?	NR	4E-24		4.317919	[3.48-5.15] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21288225	21288226	rs563290	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs563290-?	NR	1E-29		4.33531	[3.59-5.09] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	NR	2E-7		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	NR	3E-130		0.131	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	0.191	8E-117	(EA)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	0.178	4E-14	(Hispanic)	0.147	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	NR	2E-142		0.141	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	0.191	1E-127	(EA)	0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288225	21288226	rs563290	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs563290-G	0.178	1E-15	(Hispanic)	0.156	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	4E-73		0.0948329	[0.085-0.105] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	5E-46		0.0752304	[0.065-0.086] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-92		0.109297	[0.099-0.12] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	1E-40		0.071007	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	4E-58		0.0846213	[0.074-0.095] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	8E-95		0.109679	[0.099-0.12] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	6E-91		0.108053	[0.098-0.119] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-93		0.106125	[0.096-0.116] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	1E-82		0.100787	[0.091-0.111] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-76		0.0957672	[0.086-0.106] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	5E-84		0.103549	[0.093-0.114] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	4E-79		0.0977559	[0.088-0.108] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-124		0.126688	[0.12-0.14] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	5E-83		0.103636	[0.093-0.114] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-85		0.104275	[0.094-0.115] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	5E-92		0.108836	[0.098-0.119] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	1E-104		0.112271	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	4E-87		0.105597	[0.095-0.116] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	7E-84		0.103925	[0.093-0.114] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-84		0.102512	[0.092-0.113] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-35		0.0659971	[0.056-0.076] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-87		0.105086	[0.095-0.115] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-79		0.097882	[0.088-0.108] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	2p24.1		rs562338-A	0.180412	1E-23		0.051086	[0.041-0.061] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-110		0.119156	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	1E-78		0.0996082	[0.089-0.11] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-85		0.104385	[0.094-0.115] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-83		0.100078	[0.09-0.11] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-93		0.108998	[0.099-0.119] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	7E-85		0.104369	[0.094-0.115] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	2E-80		0.0984257	[0.088-0.109] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	9E-87		0.102569	[0.092-0.113] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-92		0.107978	[0.098-0.118] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p24.1		rs562338-A	0.180384	3E-81		0.0988703	[0.089-0.109] unit decrease	NR [11722792] (imputed)	N
747	chr2	21288320	21288321	rs562338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p24.1		rs562338-G	NR	1E-207		0.0929	[0.087-0.099] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
747	chr2	21288320	21288321	rs562338	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	2p24.1	APOB, LOC100287183	rs562338-?	NR	6E-7		5.006	NR unit decrease	Illumina [up to 1520000] (imputed)	N
747	chr2	21288320	21288321	rs562338	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p24.1		rs562338-?	NR	1E-9		0.015996	[0.011-0.021] unit increase	NR [6912294] (imputed)	N
747	chr2	21288320	21288321	rs562338	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Total cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	2p24.1	NR	rs562338-?	NR	8E-16		0.125	[0.094-0.156] unit increase	Illumina [1770809] (imputed)	N
747	chr2	21288320	21288321	rs562338	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	2p24.1	NR	rs562338-?	NR	3E-19		0.15	[0.12-0.18] unit increase	Illumina [1770809] (imputed)	N
747	chr2	21288320	21288321	rs562338	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs562338-?	NR	3E-23		4.219739	[3.39-5.05] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21288320	21288321	rs562338	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs562338-?	NR	2E-31		4.453379	[3.71-5.2] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	NR	4E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	NR	2E-127		0.13	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	0.192	5E-115	(EA)	0.132	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	0.177	1E-13	(Hispanic)	0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	NR	4E-140		0.139	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	0.192	7E-126	(EA)	0.142	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs562338-A	0.177	2E-15	(Hispanic)	0.156	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21288320	21288321	rs562338	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p24.1	NR	rs562338-?	NR	5E-21				Affymetrix [NR]	N
747	chr2	21288320	21288321	rs562338	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p24.1	NR	rs562338-?	NR	3E-25				Affymetrix [NR]	N
747	chr2	21288320	21288321	rs562338	18262040	Sandhu MS	2008-02-09	Lancet	LDL-cholesterol concentrations: a genome-wide association study.	LDL cholesterol	11,685 European ancestry individuals	Up to 4,979 European ancestry individuals	2p24.1	APOB	rs562338-T	0.20	1E-9		0.04	[0.02-0.06] mmol/L decrease	Affymetrix, Illumina [up to 461986]	N
747	chr2	21288320	21288321	rs562338	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	LDL cholesterol	8,589 European ancestry individuals	12,981 European ancestry individuals	2p24.1	APOB	rs562338-G	0.82	6E-22		4.89	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs581411-G	0.180589	5E-38		0.0666254	[0.057-0.077] unit increase	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs581411-G	0.180589	7E-39		0.0658928	[0.056-0.076] unit increase	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	2p24.1		rs581411-G	0.180617	2E-63		0.0842518	[0.074-0.094] unit decrease	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs581411-G	0.180589	7E-59		0.0832118	[0.073-0.093] unit decrease	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs581411-G	0.180589	3E-43		0.0702644	[0.06-0.08] unit decrease	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs581411-G	0.180589	5E-100		0.113576	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
747	chr2	21289431	21289432	rs581411	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	2p24.1		rs581411-?	NR	6E-32		0.115	[0.095-0.135] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	6E-6				Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-6		0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	5E-226				Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	4E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-22	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-193	(EA)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-11	(AA)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	6E-11	(AA)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	5E-213	(EA)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	3E-23	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-249				Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p24.1	APOB, TDRD15	rs581411-A	NR	1E-14	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	9E-10	(Asian)	4.97	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-18	(Hispanic)	5.153	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-127		4.566	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	2E-101	(EA)	4.773	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	1E-10	(AA)	3.087	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	9E-57	(EA)	4.753	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	7E-10	(Asian)	5.049	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	5E-14	(Hispanic)	5.3	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	1E-78		4.453	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21289431	21289432	rs581411	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p24.1	APOB, TDRD15	rs581411-A	NR	1E-6	(AA)	2.74	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21291311	21291312	rs548145	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2p24.1	NR	rs548145-T	0.2416	6E-156				Affymetrix, Illumina [at least 2500000] (imputed)	N
747	chr2	21291528	21291529	rs668948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs668948-G	0.179796	3E-32		0.0616766	[0.051-0.072] unit decrease	NR [11722792] (imputed)	N
747	chr2	21291528	21291529	rs668948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs668948-G	0.179796	4E-21		0.0493958	[0.039-0.06] unit decrease	NR [11722792] (imputed)	N
747	chr2	21291528	21291529	rs668948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs668948-G	0.179823	7E-49		0.0769834	[0.067-0.087] unit decrease	NR [11722792] (imputed)	N
747	chr2	21291528	21291529	rs668948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs668948-G	0.179823	4E-18		0.0446221	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
747	chr2	21291528	21291529	rs668948	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p24.1		rs668948-G	0.179823	9E-16		0.0425241	[0.032-0.053] unit decrease	NR [11722792] (imputed)	N
747	chr2	21291528	21291529	rs668948	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs668948-A	0.846176	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
747	chr2	21291528	21291529	rs668948	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs668948-?	NR	5E-90		3.795	[3.4-4.19] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21291528	21291529	rs668948	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs668948-?	NR	1E-24		4.349579	[3.52-5.18] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21291528	21291529	rs668948	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs668948-?	NR	4E-31		4.42303	[3.68-5.17] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	NR	4E-7		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	NR	2E-132		0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	0.19	1E-118	(EA)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	0.175	4E-14	(Hispanic)	0.148	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	NR	2E-145		0.142	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	0.19	1E-129	(EA)	0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs668948-G	0.175	4E-16	(Hispanic)	0.161	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21291528	21291529	rs668948	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p24.1	intergenic	rs668948-A	0.815	2E-17		0.063	[0.048-0.078] unit increase	NR [8041861] (imputed)	N
747	chr2	21293335	21293335	rs10692845	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	intergenic	rs10692845-?	0.3038	6E-209		0.0972	[0.091-0.103] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
747	chr2	21293913	21293914	rs571468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p24.1		rs571468-C	NR	6E-15		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
747	chr2	21294974	21294975	rs541041	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p24.1		rs541041-G	0.180761	1E-10		0.016	[0.01-0.022] unit increase	NR [7250403] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	NR	6E-7		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	NR	3E-133		0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	0.189	3E-119	(EA)	0.135	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	0.174	4E-14	(Hispanic)	0.149	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	NR	1E-146		0.143	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	0.189	9E-131	(EA)	0.145	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs541041-G	0.174	3E-16	(Hispanic)	0.161	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21294974	21294975	rs541041	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2p24.1	FLJ21820, GDF7, APOB	rs541041-G	0.16	8E-6	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
747	chr2	21295226	21295227	rs62122515	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	2p24.1		rs62122515-?	0.3534	8E-9		0.002857	unit decrease	NR [6200000] (imputed)	N
747	chr2	21295438	21295439	rs62122516	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs62122516-A	0.647772	5E-35		0.0531196	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
747	chr2	21299866	21299867	rs577584	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs577584-T	0.195297	1E-51		0.0767555	[0.067-0.087] unit decrease	NR [11722792] (imputed)	N
747	chr2	21299866	21299867	rs577584	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p24.1	intergenic	rs577584-A	0.6896	1E-229		0.1008	[0.095-0.107] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
747	chr2	21303042	21303043	rs2195598	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial omega-6 fatty acids	4,348 individuals	NA	2p24.1		rs2195598-T	0.315136024	5E-8		0.125485	[0.08-0.171] mmol/l increase	Illumina [7701709] (imputed)	N
747	chr2	21303469	21303470	rs7567217	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	NHDL cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	2p24.1	APOB, LOC100287183	rs7567217-?	NR	1E-6		4.893	NR unit increase	Illumina [up to 1520000] (imputed)	N
747	chr2	21303615	21303616	rs568938	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs568938-C	0.197121	1E-36		0.0654694	[0.055-0.076] unit increase	NR [11722792] (imputed)	N
747	chr2	21303615	21303616	rs568938	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	2p24.1		rs568938-?	NR	1E-25		0.1	[0.08-0.12] mg/dL increase	Affymetrix, Illumina [NR] (imputed)	N
747	chr2	21303615	21303616	rs568938	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs568938-?	NR	1E-25		4.39789	[3.57-5.22] unit increase	Illumina [32003504] (imputed)	N
747	chr2	21303615	21303616	rs568938	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs568938-?	NR	2E-31		4.403345	[3.66-5.14] unit increase	Illumina [31808917] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	NR	3E-6		0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	NR	7E-110		0.118	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	0.205	2E-99	(EA)	0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	0.183	5E-12	(Hispanic)	0.133	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	NR	2E-121		0.126	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	0.205	3E-109	(EA)	0.129	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21303615	21303616	rs568938	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p24.1	NR	rs568938-C	0.183	6E-14	(Hispanic)	0.146	unit decrease	Affymetrix [at least 7091467] (imputed)	N
747	chr2	21309121	21309122	rs28562532	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs28562532-?	NR	5E-74		4.48	[3.98-4.98] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
747	chr2	21311539	21311540	rs73920524	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs73920524-?	NR	4E-6		5.870639	[3.37-8.37] unit decrease	Illumina [32003504] (imputed)	N
747	chr2	21311539	21311540	rs73920524	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs73920524-?	NR	2E-6		5.5581	[3.25-7.86] unit decrease	Illumina [31808917] (imputed)	N
747	chr2	21311690	21311691	rs754523	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	LDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	2p24.1	APOB	rs754523-G	0.247	6E-6		4.65	NR z score increase	Affymetrix [659492]	N
747	chr2	21319015	21319016	rs672889	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	2p24.1	intergenic	rs672889-G	0.1356	4E-16		0.1294899	[0.098-0.161] mg/dl increase	Illumina [24111857] (imputed)	N
747	chr2	21322017	21322017	rs11416736	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs11416736-A	0.304469	3E-9		0.0254788	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
747	chr2	21322259	21322260	rs71435595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs71435595-A	0.960933	4E-8		0.0583988	[0.038-0.079] unit decrease	NR [11722792] (imputed)	N
747	chr2	21322259	21322260	rs71435595	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs71435595-A	0.960933	8E-9		0.0612014	[0.04-0.082] unit decrease	NR [11722792] (imputed)	N
747	chr2	21323368	21323369	rs17395333	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p24.1	APOB, LOC645949	rs17395333-A	0.739092	4E-11	(cholesterol)	0.17	[0.12-0.22] unit decrease	Illumina [13039987] (imputed)	N
747	chr2	21327634	21327635	rs97458	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p24.1		rs97458-G	0.298908	8E-17		0.0353385	[0.027-0.044] unit decrease	NR [11722792] (imputed)	N
747	chr2	21327634	21327635	rs97458	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p24.1	Intergenic	rs97458-A	0.6957	2E-8	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
747	chr2	21328824	21328825	rs312945	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p24.1		rs312945-A	0.3051	2E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
747	chr2	21334282	21334283	rs312949	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	LDL cholesterol	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	2p24.1	APOB	rs312949-C	0.28	3E-6		1.415	[0.82-2.01] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
747	chr2	21334282	21334283	rs312949	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	2p24.1	APOB	rs312949-C	0.28	7E-6		1.594	[0.9-2.29] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
747	chr2	21337305	21337306	rs111548358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs111548358-C	NR	1E-68		0.0793	[0.07-0.088] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21337305	21337306	rs111548358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs111548358-C	NR	1E-84		0.0885	[0.08-0.097] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21337305	21337306	rs111548358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs111548358-C	NR	6E-102		0.0974	[0.089-0.106] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21338240	21338240	rs764043745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs764043745-A,rs764043745-A	0.666088	3E-14		0.0327392	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
747	chr2	21338240	21338240	rs764043745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p24.1		rs764043745-A,rs764043745-A	0.666088	3E-14		0.0327392	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
747	chr2	21342588	21342588	rs36110496	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	2p24.1		rs36110496-CAT,rs36110496-CAT	0.376324358236796	1E-9		0.026477	[0.018-0.035] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21342588	21342588	rs36110496	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	2p24.1		rs36110496-CAT,rs36110496-CAT	0.376324358236796	1E-9		0.026477	[0.018-0.035] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21342588	21342588	rs36110496	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	2p24.1		rs36110496-CAT,rs36110496-CAT	0.376324358236796	2E-10	(EA)	0.0314924	[0.022-0.041] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21342588	21342588	rs36110496	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	2p24.1		rs36110496-CAT,rs36110496-CAT	0.376324358236796	2E-10	(EA)	0.0314924	[0.022-0.041] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
747	chr2	21347689	21347691	rs142138117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p24.1		rs142138117-G	NR	1E-10		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
747	chr2	21347689	21347691	rs142138117	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	2p24.1	TDRD15	rs142138117-?	NR	7E-8		5.395	NR unit increase	Illumina [up to 1520000] (imputed)	N
747	chr2	21360723	21360724	rs17399768	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs17399768-C	NR	2E-12		0.212	[0.15-0.27] unit decrease	Affymetrix [9000000] (imputed)	N
747	chr2	21364561	21364562	rs113588790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs113588790-T	NR	8E-47		0.0876	[0.076-0.1] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21364561	21364562	rs113588790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs113588790-T	NR	2E-61		0.1009	[0.089-0.113] unit increase	Affymetrix [9000000] (imputed)	N
747	chr2	21364561	21364562	rs113588790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs113588790-T	NR	7E-78		0.1141	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
748	chr2	21372546	21372547	rs11689541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs11689541-T	0.937961	7E-10		0.0502604	[0.034-0.066] unit increase	NR [11722792] (imputed)	N
748	chr2	21372546	21372547	rs11689541	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p24.1		rs11689541-T	0.937961	3E-9		0.0497386	[0.033-0.066] unit increase	NR [11722792] (imputed)	N
748	chr2	21375345	21375346	rs312976	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	2p24.1	NR	rs312976-G	0.298952	5E-324		0.0794248	[0.075-0.083] unit decrease	Affymetrix [15000001]	N
748	chr2	21378804	21378805	rs312985	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs312985-?	NR	1E-17	(LDL.total, fasting)	0.041	[NR] unit decrease	Illumina [335603]	N
748	chr2	21381176	21381177	rs12997242	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p24.1	TDRD15	rs12997242-A	0.401418	4E-7		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
748	chr2	21381176	21381177	rs12997242	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	LDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	2p24.1	TDRD15, LINC01822	rs12997242-?		3E-6	(African American)	0.14060627	[0.082-0.199] unit increase	Illumina [13620258] (imputed)	N
748	chr2	21381176	21381177	rs12997242	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2p24.1	NR	rs12997242-A	0.437687	2E-10		0.012512	[0.0086-0.0164] unit decrease	Affymetrix [16668957] (imputed)	N
748	chr2	21382443	21382444	rs528683975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	2p24.1		rs528683975-C	0.98527	4E-8		0.098696	[0.064-0.134] unit increase	NR [11722792] (imputed)	N
748	chr2	21383352	21383353	rs34468875	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p24.1		rs34468875-C	0.561584	2E-34		0.0512959	[0.043-0.06] unit decrease	NR [11722792] (imputed)	N
748	chr2	21383352	21383353	rs34468875	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p24.1		rs34468875-C	0.561584	1E-24		0.0428306	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
748	chr2	21383352	21383353	rs34468875	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large LDL	4,348 individuals	NA	2p24.1		rs34468875-T	0.43274425	2E-8		0.121388	[0.079-0.164] mmol/l increase	Illumina [7701709] (imputed)	N
748	chr2	21389658	21389659	rs4635554	20657596	Johansen CT	2010-07-25	Nat Genet	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	2p24.1	APOB	rs4635554-G	0.31	2E-7		1.67	[1.38-2.02]	Affymetrix [~ 2100000] (imputed)	N
748	chr2	21391668	21391669	rs62133279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs62133279-T	NR	2E-12		0.0367	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
748	chr2	21397181	21397182	rs506585	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs506585-?	NR	3E-31	(APOB.assay, whole)	4.093	[NR] unit decrease	Illumina [335603]	N
748	chr2	21397181	21397182	rs506585	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs506585-?	NR	2E-22	(LDL.total, whole)	0.04	[NR] unit decrease	Illumina [335603]	N
748	chr2	21397181	21397182	rs506585	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p24.1	APOB	rs506585-?	NR	1E-25	(APOB.assay, fasting)	4.355	[NR] unit decrease	Illumina [335603]	N
748	chr2	21399215	21399216	rs478442	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p24.1	NR	rs478442-?	NR	4E-16				Affymetrix [NR]	N
748	chr2	21399215	21399216	rs478442	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p24.1	NR	rs478442-?	NR	8E-21				Affymetrix [NR]	N
748	chr2	21401788	21401789	rs522761	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p24.1	AC010872.2	rs522761-T	0.245722	7E-26		0.06829027	[0.056-0.081] unit decrease	Affymetrix [7288503] (imputed)	N
748	chr2	21408646	21408647	rs312936	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs312936-T	0.195837	3E-18		0.0439487	[0.034-0.054] unit decrease	NR [11722792] (imputed)	N
748	chr2	21414141	21414142	rs503662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p24.1	NR	rs503662-?	NR	1E-16		3.419786	[2.61-4.23] unit increase	Illumina [32003504] (imputed)	N
748	chr2	21414141	21414142	rs503662	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p24.1	NR	rs503662-?	NR	7E-21		3.468823	[2.74-4.19] unit increase	Illumina [31808917] (imputed)	N
748	chr2	21414141	21414142	rs503662	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	2p24.1	APOB	rs503662-T	0.652	3E-9		0.11	[0.075-0.145] unit decrease	Affymetrix [~ 2740000] (imputed)	N
748	chr2	21414759	21414760	rs2435386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs2435386-C	0.199464	9E-50		0.0732716	[0.064-0.083] unit decrease	NR [11722792] (imputed)	N
748	chr2	21416613	21416614	rs539845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs539845-A	0.195131	1E-24		0.0480715	[0.039-0.057] unit decrease	NR [11722792] (imputed)	N
748	chr2	21416613	21416614	rs539845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs539845-A	0.195131	1E-17		0.0400549	[0.031-0.049] unit decrease	NR [11722792] (imputed)	N
748	chr2	21416613	21416614	rs539845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p24.1		rs539845-A	0.195108	7E-10		0.0285276	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
748	chr2	21416613	21416614	rs539845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs539845-A	0.195131	1E-29		0.0528685	[0.044-0.062] unit decrease	NR [11722792] (imputed)	N
748	chr2	21416613	21416614	rs539845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p24.1		rs539845-A	0.195131	3E-30		0.0537637	[0.045-0.063] unit decrease	NR [11722792] (imputed)	N
748	chr2	21417977	21417978	rs12618122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs12618122-C	0.702649	1E-36		0.0544582	[0.046-0.063] unit increase	NR [11722792] (imputed)	N
748	chr2	21417977	21417978	rs12618122	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs12618122-C	0.702649	2E-35		0.0534316	[0.045-0.062] unit increase	NR [11722792] (imputed)	N
748	chr2	21419649	21419650	rs10221742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p24.1		rs10221742-G	0.759632	2E-24		0.0476955	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
748	chr2	21419649	21419650	rs10221742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs10221742-G	0.759608	1E-30		0.0526012	[0.044-0.062] unit increase	NR [11722792] (imputed)	N
748	chr2	21419649	21419650	rs10221742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p24.1		rs10221742-G	0.759632	4E-23		0.0463821	[0.037-0.056] unit increase	NR [11722792] (imputed)	N
748	chr2	21419649	21419650	rs10221742	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs10221742-G	0.759608	9E-34		0.0556752	[0.047-0.065] unit increase	NR [11722792] (imputed)	N
748	chr2	21419649	21419650	rs10221742	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p24.1	intergenic	rs10221742-A	0.237	2E-12		0.054	[0.038-0.07] unit decrease	Affymetrix [7947838] (imputed)	N
748	chr2	21420827	21420828	rs10206521	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine in genetic generalized epilepsy	137 European ancestry responders, 250 European ancestry non-responders	NA	2p24.1	intergenic	rs10206521-?	NR	3E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
748	chr2	21423531	21423532	rs66774912	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	2p24.1	APOB	rs66774912-G	0.863	1E-9		0.1826	[0.12-0.24] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804376	4E-16		0.0399651	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804338	3E-42		0.0667235	[0.057-0.076] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804338	1E-35		0.0612909	[0.052-0.071] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804338	2E-41		0.0657681	[0.056-0.075] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804376	4E-26		0.0540081	[0.044-0.064] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804376	1E-8		0.0298811	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
748	chr2	21426742	21426743	rs12712940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs12712940-C	0.804376	1E-8		0.029622	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
748	chr2	21428048	21428049	rs312053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p24.1		rs312053-?	NR	6E-8				NR [~ 8900000] (imputed)	N
748	chr2	21428288	21428289	rs71435601	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	2p24.1	NR	rs71435601-G	0.133847	4E-13		0.11650893	[0.085-0.148] mg/dl decrease	Illumina [24111857] (imputed)	N
748	chr2	21430445	21430446	rs117186081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	61,583 European ancestry cases, 50,427 European ancestry controls, 41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	2p24.1		rs117186081-A	NR	5E-13		0.1751	[0.13-0.22] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
748	chr2	21430445	21430446	rs117186081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (salicylic acid and derivatives)	41,461 East Asian ancestry cases, 137,265 East Asian ancestry controls	NA	2p24.1		rs117186081-A	0.037200508	5E-13		0.17509003	[0.13-0.22] unit increase	Illumina [13429980] (imputed)	N
748	chr2	21430445	21430446	rs117186081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	2p24.1		rs117186081-A	NR	5E-9		0.1326	[0.088-0.177] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
748	chr2	21434579	21434580	rs430096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs430096-A	0.778731	3E-9		0.0296034	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
748	chr2	21434579	21434580	rs430096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p24.1		rs430096-A	0.778735	7E-9		0.0278706	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
748	chr2	21434579	21434580	rs430096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs430096-A	0.778735	2E-9		0.0296351	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
748	chr2	21434579	21434580	rs430096	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs430096-A	0.778731	4E-8		0.0268181	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
748	chr2	21434579	21434580	rs430096	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p24.1	TDRD15	rs430096-A	0.778955	2E-103		0.0542983	[0.049-0.059] unit increase	Affymetrix [NR] (imputed)	N
748	chr2	21435739	21435740	rs536858685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	2p24.1		rs536858685-A	0.037151172	5E-9		0.13237332	[0.088-0.177] unit increase	Illumina [13429980] (imputed)	N
748	chr2	21435822	21435823	rs143132975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p24.1	NR	rs143132975-?	NR	2E-8		0.04315	[0.028-0.058] unit increase novel	Illumina [6108953] (imputed)	N
748	chr2	21441551	21441552	rs116157399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs116157399-A	NR	5E-20		0.0839	[0.066-0.102] unit increase	Affymetrix [9000000] (imputed)	N
748	chr2	21441551	21441552	rs116157399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs116157399-A	NR	2E-23		0.0911	[0.073-0.109] unit increase	Affymetrix [9000000] (imputed)	N
748	chr2	21441551	21441552	rs116157399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs116157399-A	NR	2E-28		0.1016	[0.084-0.12] unit increase	Affymetrix [9000000] (imputed)	N
748	chr2	21453732	21453733	rs10166144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs10166144-G	NR	4E-173		0.0995	[0.093-0.106] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21453732	21453733	rs10166144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs10166144-G	NR	9E-195		0.1057	[0.099-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21453732	21453733	rs10166144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs10166144-G	NR	1E-250		0.1202	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21460175	21460176	rs10166647	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p24.1	APOB	rs10166647-?	NR	7E-14		1.161	[0.85-1.48] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
748	chr2	21462742	21462743	rs312030	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs312030-?	NR	7E-9		1.081	[0.56-1.6] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
748	chr2	21463327	21463327	rs34478966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs34478966-T	0.46105	9E-9		0.023864	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
748	chr2	21470986	21470987	rs10183198	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Low density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	2p24.1	AC067959.1	rs10183198-?	NR	5E-7		5.038	NR unit decrease	Illumina [up to 1520000] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	4E-10		0.0309094	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	2E-15		0.039705	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	2E-10		0.0316284	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	3E-15		0.0396357	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204194	2E-9		0.0297971	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	4E-9		0.0291186	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	3E-23		0.0503912	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	6E-11		0.02987	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	1E-10		0.0320063	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	6E-33		0.0604379	[0.051-0.07] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	2E-8		0.027852	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	5E-17		0.0431978	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	1E-19		0.0457707	[0.036-0.056] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	1E-21		0.0484913	[0.039-0.058] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	3E-13		0.0365364	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
748	chr2	21471602	21471603	rs1848922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p24.1		rs1848922-T	0.204187	8E-16		0.0404556	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
748	chr2	21472752	21472753	rs79355265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs79355265-T	NR	3E-31		0.0756	[0.063-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21472752	21472753	rs79355265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs79355265-T	NR	4E-37		0.083	[0.07-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21472752	21472753	rs79355265	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs79355265-T	NR	5E-47		0.094	[0.081-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21482438	21482439	rs10205003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs10205003-T	NR	3E-9		0.062	[0.041-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21482438	21482439	rs10205003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs10205003-T	NR	9E-11		0.068	[0.047-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
748	chr2	21482438	21482439	rs10205003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs10205003-T	NR	3E-14		0.0798	[0.059-0.1] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr2	21510294	21510295	rs58953077	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p24.1	TDRD15	rs58953077-C	0.603729	2E-12		0.0145209	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
749	chr2	21510294	21510295	rs58953077	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p24.1	APOB	rs58953077-?	NR	1E-12		1.125	[0.77-1.48] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
749	chr2	21519170	21519171	rs10514650	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (pre-diagnosis)	27 European ancestry cases, 1,180 European ancestry controls	NA	2p24.1	TDRD15	rs10514650-A	NR	2E-6		4.2	NR	Illumina [602644]	N
749	chr2	21522693	21522694	rs35127135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs35127135-T	NR	7E-11		0.0236	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21522693	21522694	rs35127135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs35127135-T	NR	4E-16		0.0295	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21522693	21522694	rs35127135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs35127135-T	NR	5E-18		0.0315	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21524165	21524166	rs409331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs409331-G	NR	3E-12		0.0334	[0.024-0.043] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21524165	21524166	rs409331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs409331-G	NR	2E-16		0.0396	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21524165	21524166	rs409331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs409331-G	NR	1E-25		0.0503	[0.041-0.06] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21528519	21528520	rs77009036	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs77009036-A	NR	2E-10		0.0579	[0.04-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr2	21530658	21530659	rs60960031	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	2p24.1	NR	rs60960031-G	0.5920000000000001	4E-7		1.0815605	[NR]	NR [9372253] (imputed)	N
749	chr2	21531265	21531266	rs1510606	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	2p24.1	NR	rs1510606-G	0.583	3E-8		1.06983	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
749	chr2	21533106	21533107	rs12469758	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p24.1	TDRD15, LINC01822	rs12469758-?	NR	2E-13		0.0982115	[0.072-0.124] unit increase	Illumina [4804024] (imputed)	N
749	chr2	21533106	21533107	rs12469758	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 36,140 Japanese ancestry controls	NA	2p24.1	TDRD15, KLHL29	rs12469758-A	0.06	1E-10		1.28	[1.19-1.38]	Illumina [5932413] (imputed)	N
749	chr2	21533106	21533107	rs12469758	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p24.1	NR	rs12469758-?	NR	3E-33		0.09727	[0.081-0.113] unit increase novel	Illumina [6108953] (imputed)	N
749	chr2	21533106	21533107	rs12469758	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	2p24.1	NR	rs12469758-?	NR	5E-53		0.1619	[0.14-0.18] unit increase novel	Illumina [6108953] (imputed)	N
749	chr2	21535682	21535683	rs116282734	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2p24.1		rs116282734-C	NR	1E-6		0.9857	unit increase	Illumina [8524982] (imputed)	N
749	chr2	21540710	21540711	rs219551	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	2p24.1	ENSG00000231204	rs219551-T		6E-6		1.64	[1.33-2.04]	Illumina [up to 4983952] (imputed)	N
749	chr2	21543024	21543025	rs4665268	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p24.1	NR	rs4665268-?	NR	8E-6		1.58	[1.47-1.7]	Illumina [539000] (imputed)	N
749	chr2	21577742	21577743	rs219553	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p24.1	APOB	rs219553-?	0.42	7E-6		5.56	[NR]	Affymetrix [512497]	N
749	chr2	21582970	21582971	rs76995491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs76995491-G	NR	3E-11		0.0256	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21582970	21582971	rs76995491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs76995491-G	NR	8E-15		0.0298	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21582970	21582971	rs76995491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs76995491-G	NR	3E-24		0.0391	[0.032-0.047] unit increase	Affymetrix [9000000] (imputed)	N
749	chr2	21591437	21591438	rs114260808	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	2p24.1	NR	rs114260808-C	0.9874	1E-8		1176.21	[774.05-1578.37] unit increase	Affymetrix, Illumina [12990252] (imputed)	N
749	chr2	21619108	21619109	rs146350463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2p24.1		rs146350463-G	0.037885	2E-8		0.0520849	[0.034-0.07] unit decrease	Illumina [13478961] (imputed)	N
749	chr2	21619536	21619537	rs75135574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs75135574-T	NR	1E-12		0.0437	[0.032-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr2	21619536	21619537	rs75135574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs75135574-T	NR	2E-14		0.0474	[0.035-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
749	chr2	21619536	21619537	rs75135574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs75135574-T	NR	4E-18		0.0536	[0.041-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
750	chr2	21675682	21675683	rs183072706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	2p24.1		rs183072706-G	0.027589	7E-10		0.0676341	[0.046-0.089] unit decrease	Illumina [13478948] (imputed)	N
750	chr2	21694450	21694451	rs11897825	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2p24.1	AC011752.1, AC067959.1	rs11897825-G		3E-7	(women)	0.08	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
750	chr2	21694450	21694451	rs11897825	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	2p24.1	NR	rs11897825-A	NR	3E-7	(Females)	0.08	[0.049-0.111] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
750	chr2	21694450	21694451	rs11897825	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	2p24.1	AC011752.1, AC067959.1	rs11897825-A	0.606	5E-7	(Hispanic, females)	0.09	[0.055-0.125] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
751	chr2	21762804	21762805	rs115510004	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2p24.1	LOC645949	rs115510004-?		3E-6				Illumina [2668805]	N
751	chr2	21764834	21764835	rs75211012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs75211012-A	NR	4E-13		0.0337	[0.025-0.043] unit increase	Affymetrix [9000000] (imputed)	N
751	chr2	21764834	21764835	rs75211012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs75211012-A	NR	1E-16		0.0385	[0.029-0.048] unit increase	Affymetrix [9000000] (imputed)	N
751	chr2	21764834	21764835	rs75211012	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs75211012-A	NR	3E-24		0.0472	[0.038-0.056] unit increase	Affymetrix [9000000] (imputed)	N
751	chr2	21840092	21840093	rs1117324	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p24.1	intergenic	rs1117324-?	0.156	3E-7	(risperidone-hip circumference)			Affymetrix [492900]	N
751	chr2	21884091	21884092	rs114191746	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p24.1	NR	rs114191746-?	NR	6E-8		5588.722	NR unit decrease	Illumina [2379855]	N
752	chr2	21889578	21889579	rs6547818	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	2p24.1	Intergenic	rs6547818-?		1E-6				Affymetrix [905761]	N
752	chr2	21901998	21901999	rs147259480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs147259480-T	NR	5E-11		0.053	[0.037-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr2	21913938	21913939	rs577358806	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p24.1	AC018742.1, AC067959.1	rs577358806-T	0.0033	1E-6		0.3666	[0.22-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
752	chr2	21913938	21913939	rs577358806	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p24.1	AC018742.1, AC067959.1	rs577358806-T	0.0034	7E-6		0.3594	[0.2-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
752	chr2	21913938	21913939	rs577358806	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2p24.1	AC018742.1, AC067959.1	rs577358806-T	0.0034	7E-6		0.3594	[0.2-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
752	chr2	21913938	21913939	rs577358806	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p24.1	AC018742.1, AC067959.1	rs577358806-T	0.0033	6E-7		0.379	[0.23-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
752	chr2	21942492	21942493	rs13408439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p24.1	NR	rs13408439-G	NR	3E-9		0.0404	[0.027-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr2	21942492	21942493	rs13408439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p24.1	NR	rs13408439-G	NR	2E-9		0.0413	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr2	21942492	21942493	rs13408439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs13408439-G	NR	4E-13		0.0497	[0.036-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
753	chr2	22059939	22059940	rs17725296	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	2p24.1	LOC645949, LOC102723362	rs17725296-C	0.391	5E-6		0.028	[0.016-0.04] unit increase	Illumina [7358575] (imputed)	N
753	chr2	22067212	22067213	rs1022376	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p24.1		rs1022376-T	0.473	6E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
753	chr2	22067212	22067213	rs1022376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p24.1	NR	rs1022376-C	0.516	5E-11		0.00724979	[0.0051-0.0094] unit decrease	NR [9732723] (imputed)	N
753	chr2	22067212	22067213	rs1022376	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p24.1	NR	rs1022376-C	0.515821	2E-8	(Conditioned on chr2:22582968)	0.014744839	[0.0096-0.0199] unit decrease	NR [~ 10000000] (imputed)	N
754	chr2	22173663	22173664	rs13409834	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p24.1	NR	rs13409834-G	0.498937605224899	4E-9		0.0053895703	[0.0036-0.0072] unit decrease	NR [NR]	N
754	chr2	22173663	22173664	rs13409834	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p24.1	NR	rs13409834-G	0.498937605224899	5E-9		0.006619811	[0.0044-0.0088] unit decrease	NR [NR]	N
754	chr2	22173663	22173664	rs13409834	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p24.1	NR	rs13409834-G	0.498937605224899	5E-9		0.008601716	[0.0057-0.0115] unit decrease	NR [NR]	N
754	chr2	22173663	22173664	rs13409834	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p24.1	NR	rs13409834-G	0.498937605224899	4E-9		0.0055089006	[0.0037-0.0073] unit decrease	NR [NR]	N
754	chr2	22199762	22199763	rs116450299	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p24.1	NR	rs116450299-?	NR	3E-8		5226.671	NR unit decrease	Illumina [2379855]	N
754	chr2	22219386	22219387	rs62134595	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs62134595-C	NR	3E-10		0.0532	[0.037-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
754	chr2	22232266	22232267	rs76081179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p24.1	NR	rs76081179-C	NR	2E-13		0.0362	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
755	chr2	22297002	22297003	rs7600502	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	2p24.1	intergenic	rs7600502-G	0.053	3E-9	(WBC)	0.39	[NR] 10^3/ul decrease	Affymetrix [1701735] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p24.1		rs145030841-T	NR	9E-25		0.1157	[0.094-0.138] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	2p24.1		rs145030841-T	0.035795	9E-25		0.115748	[0.094-0.138] unit increase	Illumina [13476599] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs145030841-T	NR	1E-10		0.2729	[0.19-0.36] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs145030841-T	0.035078801	1E-10		0.27294254	[0.19-0.36] unit increase	Illumina [13427135] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p24.1		rs145030841-T	NR	7E-26		0.3089	[0.25-0.37] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p24.1		rs145030841-T	0.035936091	7E-26		0.30894592	[0.25-0.37] unit increase	Illumina [13429980] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	2p24.1		rs145030841-T	0.036997	1E-27		0.162015	[0.13-0.19] unit increase	Illumina [13461863] (imputed)	N
755	chr2	22301519	22301520	rs145030841	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p24.1		rs145030841-T	NR	1E-27		0.162	[0.13-0.19] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
755	chr2	22347499	22347500	rs11693526	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p24.1	NR	rs11693526-T	0.929835	7E-6		0.0195375	[0.011-0.028] unit decrease	Affymetrix [NR] (imputed)	N
755	chr2	22347499	22347500	rs11693526	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p24.1	TDRD15	rs11693526-T	0.929835	9E-12		0.0294757	[0.021-0.038] unit decrease	Affymetrix [NR] (imputed)	N
755	chr2	22347499	22347500	rs11693526	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p24.1	intergenic	rs11693526-?	NR	2E-8		0.0294	[0.02-0.039] unit increase	Affymetrix [5701386] (imputed)	N
755	chr2	22372378	22372379	rs80348946	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	2p24.1		rs80348946-C	0.023392	8E-7		1.9975152	NR	Affymetrix [7846216] (imputed)	N
756	chr2	22431121	22431122	rs1554269	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	2p24.1	AC068490.2	rs1554269-C	0.4592	2E-10		0.014705358	[0.0095-0.0199] unit decrease	NR [9417325] (imputed)	N
756	chr2	22433762	22433763	rs6721577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p24.1	NR	rs6721577-T	0.583601435603444	1E-10		0.005989452	[0.0042-0.0078] unit increase	NR [NR]	N
756	chr2	22433762	22433763	rs6721577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p24.1	NR	rs6721577-T	0.583601435603444	4E-10		0.007317855	[0.005-0.0096] unit increase	NR [NR]	N
756	chr2	22433762	22433763	rs6721577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p24.1	NR	rs6721577-T	0.583601435603444	9E-10		0.0077771917	[0.0053-0.0103] unit increase	NR [NR]	N
756	chr2	22433762	22433763	rs6721577	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p24.1	NR	rs6721577-T	0.583601435603444	3E-10		0.006105537	[0.0042-0.008] unit increase	NR [NR]	N
756	chr2	22435355	22435356	rs11124319	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	2p24.1	NR	rs11124319-?		4E-10				NR [520857]	N
756	chr2	22435355	22435356	rs11124319	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	2p24.1	NR	rs11124319-?		2E-8				NR [11140414]	N
756	chr2	22435355	22435356	rs11124319	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	2p24.1	NR	rs11124319-A	NR	2E-8		5.618	z score decrease	Affymetrix [10847151] (imputed)	N
756	chr2	22435355	22435356	rs11124319	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	2p24.1	NR	rs11124319-A	0.4271	4E-9		0.0131	[0.0088-0.0174] unit decrease	Illumina [NR] (imputed)	N
756	chr2	22438401	22438402	rs6720064	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p24.1	NR	rs6720064-G	0.578139399454319	5E-10		0.009351636	[0.0064-0.0123] unit increase	NR [NR]	N
756	chr2	22439513	22439514	rs10193722	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p24.1	NR	rs10193722-C	0.457	9E-9		0.0125677	[0.0083-0.0169] unit increase	NR [9732723] (imputed)	N
756	chr2	22442098	22442099	rs6738860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p24.1		rs6738860-A	0.4574	5E-10		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
756	chr2	22442098	22442099	rs6738860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p24.1	Intergenic	rs6738860-A	0.4574	4E-10	(MTAG)	0.0083	[0.0058-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
756	chr2	22442391	22442392	rs11124322	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p24.1	KLHL29	rs11124322-A	0.452	4E-8		0.0065	[0.0041-0.0089] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
756	chr2	22444220	22444221	rs4321395	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p24.1	NR	rs4321395-?	NR	1E-6		4.898	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
756	chr2	22445082	22445083	rs148868229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs148868229-C	0.034192737	9E-9		0.20795478	[0.14-0.28] unit increase	Illumina [13427711] (imputed)	N
756	chr2	22445082	22445083	rs148868229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p24.1		rs148868229-C	NR	9E-9		0.208	[0.14-0.28] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
756	chr2	22450248	22450249	rs6759922	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	2p24.1	NR	rs6759922-G	0.5494	3E-8		0.0104	[0.0067-0.0141] unit increase	Illumina [NR] (imputed)	N
756	chr2	22452370	22452371	rs10172121	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	2p24.1	NR	rs10172121-C	0.5566	1E-8		0.0137	[0.009-0.0184] unit increase	Illumina [NR] (imputed)	N
756	chr2	22479074	22479075	rs10211373	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2p24.1	intergenic	rs10211373-T	0.50267	2E-8		5.593	z score decrease	Illumina [18485882] (imputed)	N
756	chr2	22503043	22503044	rs12052908	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	2p24.1	NR	rs12052908-T	0.4675	4E-22		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
756	chr2	22517988	22517989	rs11674333	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2p24.1		rs11674333-?	NR	8E-14		0.0201	unit increase	NR [NR]	N
756	chr2	22522713	22522714	rs115904095	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p24.1	NR	rs115904095-?	NR	7E-11		6677.9204	NR unit decrease	Illumina [2379855]	N
756	chr2	22530798	22530799	rs7562618	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p24.1	NR	rs7562618-C	NR	5E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
756	chr2	22535565	22535566	rs12052648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p24.1		rs12052648-C	NR	8E-9		0.0424	[0.028-0.057] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
756	chr2	22539737	22539738	rs7585730	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	2p24.1	NR	rs7585730-?		2E-8				NR [520857]	N
757	chr2	22546630	22546631	rs12712388	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2p24.1	Intergenic	rs12712388-?		1E-10				NR [6786993] (imputed)	N
757	chr2	22548773	22548774	rs6741228	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2p24.1	NR	rs6741228-T	0.451827	6E-6		1.0649627	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
757	chr2	22548773	22548774	rs6741228	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p24.1		rs6741228-T	0.433	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix [up to 90000000] (imputed)	N
757	chr2	22551104	22551105	rs12992463	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	2p24.1	Intergenic	rs12992463-A	0.5	3E-6		1.12	[1.06-1.19]	Illumina [~ 2100000] (imputed)	N
757	chr2	22554113	22554114	rs4074442	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p24.1		rs4074442-G	0.603	1E-22		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
757	chr2	22557528	22557528	rs138850767	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p24.1	LINC01884	rs138850767-A	0.631005	1E-11		0.0143963	[0.01-0.019] unit increase	NR [16516521] (imputed)	N
757	chr2	22558875	22558876	rs58184964	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p24.1	NA	rs58184964-G		6E-11		0.0122608	[0.0086-0.0159] unit decrease	Illumina [13288253] (imputed)	N
757	chr2	22558875	22558876	rs58184964	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p24.1	KLHL29	rs58184964-A	0.3854	7E-13		0.017448151	[0.013-0.022] unit increase	Affymetrix [11515109] (imputed)	N
757	chr2	22558972	22558973	rs57537843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p24.1		rs57537843-?	NR	1E-7				NR [~ 8900000] (imputed)	N
757	chr2	22564292	22564293	rs2339515	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	2p24.1	NR	rs2339515-T	NR	5E-8		5.461	NR z score increase	NR [NR]	N
757	chr2	22564292	22564293	rs2339515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p24.1		rs2339515-?	NR	7E-10				NR [~ 8900000] (imputed)	N
757	chr2	22568712	22568713	rs7569716	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	2p24.1	LOC645949	rs7569716-?	NR	1E-7	(AA)			Illumina [up to 701491] (imputed)	N
757	chr2	22569368	22569369	rs1995812	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	2p24.1	NR	rs1995812-A	0.3795	1E-9		0.02566276	[0.017-0.034] unit increase	NR [NR]	N
757	chr2	22569368	22569369	rs1995812	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p24.1	NR	rs1995812-A	0.377	6E-10		0.0093176	[0.0064-0.0123] unit decrease	NR [9732723] (imputed)	N
757	chr2	22576099	22576100	rs1605834	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2p24.1	NR	rs1605834-?	NR	8E-6		1.3206	[NR]	Affymetrix [722112]	N
757	chr2	22578506	22578507	rs151337607	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p24.1	LINC01822, LINC01884	rs151337607-?		4E-17		0.14	[0.11-0.17] unit decrease	Illumina [31500000] (imputed)	N
757	chr2	22582967	22582968	rs61533748	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	2p24.1	NR	rs61533748-C	NR	4E-11		1.0309278		NR [NR] (imputed)	N
757	chr2	22582967	22582968	rs61533748	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p24.1	NR	rs61533748-C	0.384	3E-11		0.017435705	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
757	chr2	22590099	22590100	rs12466547	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p24.1	NR	rs12466547-A	0.363	2E-15		0.0089471	[0.0067-0.0111] unit increase	NR [9732723] (imputed)	N
757	chr2	22604139	22604140	rs2339519	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2p24.1	NR	rs2339519-A	0.4732	2E-8		0.063345835	[0.041-0.085] unit increase	NR [NR]	N
757	chr2	22604139	22604140	rs2339519	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2p24.1	NR	rs2339519-A	0.4732	2E-9		0.06645702	[0.045-0.088] unit increase	NR [NR]	N
757	chr2	22604139	22604140	rs2339519	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2p24.1	NR	rs2339519-?		2E-10				NR [520857]	N
757	chr2	22604139	22604140	rs2339519	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p24.1	intergenic	rs2339519-A	0.449	5E-6		1.05285	[1.03-1.07]	NR [9372253] (imputed)	N
757	chr2	22623391	22623392	rs11887562	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2p24.1	NR	rs11887562-A	0.493	2E-8		0.061676037	[0.040-0.083] unit increase	NR [NR]	N
757	chr2	22623391	22623392	rs11887562	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2p24.1	Intergenic	rs11887562-?		3E-8				NR [6786993] (imputed)	N
757	chr2	22641151	22641152	rs11903391	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2p24.1	NR	rs11903391-?		5E-9				NR [8377093]	N
757	chr2	22650187	22650188	rs13418451	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p24.1		rs13418451-C	0.479	8E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
758	chr2	22695701	22695702	rs182210478	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Lipid traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	2p24.1	AC068490.2, AC096570.2	rs182210478-?	NR	6E-7	(LDL)	1.21	[0.74-1.68] unit increase	Illumina [14948665] (imputed)	N
758	chr2	22736986	22736987	rs17043947	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2p24.1	intergenic	rs17043947-T	0.04	2E-7		0.07	[NR] unit decrease	Illumina [2380486] (imputed)	N
758	chr2	22741938	22741939	rs13006508	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs13006508-?	NR	2E-8				NR [2625067]	N
758	chr2	22747123	22747124	rs10199182	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p24.1	LOC10013084	rs10199182-A	NR	4E-7		1.054	[1.03-1.07]	Illumina [6627481] (imputed)	N
758	chr2	22747123	22747124	rs10199182	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p24.1	intergenic	rs10199182-A	NR	7E-7		1.052	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
758	chr2	22754465	22754466	rs1509378	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs1509378-?	NR	1E-9				NR [2625067]	N
758	chr2	22754465	22754466	rs1509378	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs1509378-A	0.3499	2E-9		0.07223876	[0.049-0.096] unit increase	NR [NR]	N
758	chr2	22754465	22754466	rs1509378	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		LOC10013084	rs1509378-A	NR	5E-9	(EA)	1.072	[1.05-1.1]	Illumina [6627481] (imputed)	N
758	chr2	22754465	22754466	rs1509378	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs1509378-A	NR	2E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
758	chr2	22774190	22774191	rs1682093	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2p24.1	AC096570.1	rs1682093-T	0.9983	5E-7		1.3027	[0.79-1.81] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
759	chr2	22822158	22822159	rs13015955	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	2p24.1	intergenic	rs13015955-A	0.05	4E-7		0.179	[0.11-0.25] unit increase	Affymetrix [~ 2740000] (imputed)	N
759	chr2	22848682	22848683	rs1484680	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p24.1	NR	rs1484680-G	0.582474065213178	9E-10		0.005710316	[0.0039-0.0075] unit decrease	NR [NR]	N
759	chr2	22848682	22848683	rs1484680	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p24.1	NR	rs1484680-G	0.582474065213178	1E-9		0.007045651	[0.0048-0.0093] unit decrease	NR [NR]	N
759	chr2	22848682	22848683	rs1484680	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p24.1	NR	rs1484680-G	0.582474065213178	7E-10		0.009189445	[0.0063-0.0121] unit decrease	NR [NR]	N
759	chr2	22848682	22848683	rs1484680	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p24.1	NR	rs1484680-G	0.582474065213178	3E-9		0.0075243823	[0.005-0.01] unit decrease	NR [NR]	N
759	chr2	22848682	22848683	rs1484680	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p24.1	NR	rs1484680-G	0.582474065213178	7E-10		0.0058875107	[0.004-0.0078] unit decrease	NR [NR]	N
759	chr2	22848829	22848830	rs72792513	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	2p24.1	NR	rs72792513-?	NR	2E-6		0.3982	[0.24-0.55] unit decrease	Illumina [at least 560000] (imputed)	N
759	chr2	22868208	22868209	rs34481134	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p24.1	Intergenic	rs34481134-?	NR	2E-6		2.199	[NR]	Affymetrix [492217] (imputed)	N
760	chr2	22960180	22960181	rs13394164	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	2p24.1	NR	rs13394164-A	0.593	2E-8		0.023693567	[0.015-0.032] unit decrease	NR [NR]	N
760	chr2	22966801	22966802	rs62122747	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	2p24.1		rs62122747-?	NR	9E-6		1.499	[1.253-1.792]	Affymetrix [7975321] (imputed)	N
761	chr2	23091476	23091477	rs145247880	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2p24.1	NR	rs145247880-C	1.0	5E-6		1.06	[-1.0176-3.1376]	Affymetrix [at least 143006] (imputed)	N
761	chr2	23124557	23124558	rs10189050	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.1	KLHL29	rs10189050-C	0.053	4E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
761	chr2	23178682	23178683	rs12623722	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	2p24.1	NR	rs12623722-G		4E-6		0.1185	[0.068-0.169] SD units increase	NR [10700000] (imputed)	N
761	chr2	23179530	23179531	rs6737109	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	2p24.1	NR	rs6737109-C		2E-6		0.116	[0.068-0.164] SD units decrease	NR [10700000] (imputed)	N
761	chr2	23187503	23187504	rs2681019	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p24.1	KLHL29	rs2681019-?	0.28	8E-8		2.58	[1.82-3.66]	Affymetrix [832357]	N
762	chr2	23202247	23202248	rs7570259	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p24.1	intergenic	rs7570259-?		6E-6	(SG)	1.59	[0.9-2.28] unit increase	Illumina [693128]	N
762	chr2	23213037	23213038	rs72812800	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	2p24.1		rs72812800-A	NR	3E-6		0.083	unit decrease	Illumina [NR] (imputed)	N
762	chr2	23234258	23234259	rs2681035	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p24.1	NR	rs2681035-?	NR	3E-12				Affymetrix [NR]	N
762	chr2	23238942	23238943	rs41458646	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	2p24.1	intergenic	rs41458646-G	0.17	8E-6				Affymetrix [614963]	N
762	chr2	23247405	23247406	rs541590443	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p24.1	NR	rs541590443-?	NR	6E-6		4.54	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
763	chr2	23370511	23370512	rs62123774	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary volume	6,462 European ancestry individuals	NA	2p24.1	LOC101929251	rs62123774-T	0.93	9E-6		0.24	NR unit decrease	NR [NR] (imputed)	N
763	chr2	23414650	23414651	rs1449984	20800221	Terracciano A	2010-08-25	Biol Psychiatry	Genome-wide association scan of trait depression.	Depression (quantitative trait)	3,972 Sardinian individuals, 839 European ancestry individuals	NA	2p24.1	intergenic	rs1449984-A	0.72	7E-6		0.15	[NR] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
764	chr2	23511423	23511424	rs72771466	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Aliivibrio abundance in stool	5,959 Finnish ancestry individuals	NA	2p24.1		rs72771466-T	0.0311126	1E-8		0.0961387	[0.063-0.129] unit increase	Illumina [7980478] (imputed)	N
764	chr2	23538517	23538518	rs62126824	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p24.1	KLHL29	rs62126824-G	NR	6E-6	(sleep latency)	0.4623	[0.26-0.66] unit increase	Affymetrix [7141204] (imputed)	N
764	chr2	23538631	23538632	rs1002159	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	2p24.1	intergenic	rs1002159-A	NR	5E-6	(adjusted for clinical variables)			Illumina [up to 3791089] (imputed)	N
764	chr2	23548613	23548614	rs2577720	21326311	Bhatnagar P	2011-02-17	J Hum Genet	Genome-wide association study identifies genetic variants influencing F-cell levels in sickle-cell patients.	F-cell distribution in sickle cell anaemia	440 African American individuals	NA	2p24.1	UBXD4	rs2577720-C	0.33	8E-6		0.82	[0.47-1.17] unit decrease	Illumina [660740]	N
764	chr2	23592144	23592145	rs2577704	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p24.1	NR	rs2577704-G	0.900979990049305	5E-6	(IGP51)	0.2366	[0.14-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
764	chr2	23592144	23592145	rs2577704	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p24.1	NR	rs2577704-G	0.900847768293775	3E-6	(IGP11)	0.2408	[0.14-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
765	chr2	23602601	23602602	rs34657012	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	2p24.1	NR	rs34657012-A	NR	3E-9		0.01532	NR unit increase	NR [7259579]	N
765	chr2	23602601	23602602	rs34657012	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	2p24.1	KLHL29	rs34657012-A	0.279037	2E-9		5.99	z score increase	NR [10847151] (imputed)	N
765	chr2	23611437	23611438	rs13033444	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p24.1	KLHL29	rs13033444-G		4E-20		0.0089	[0.0069-0.0109] unit increase	Affymetrix [13304133] (imputed)	N
765	chr2	23611437	23611438	rs13033444	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p24.1	NR	rs13033444-G	0.278	2E-10		0.00767011	[0.0053-0.01] unit increase	NR [9732723] (imputed)	N
765	chr2	23632636	23632637	rs13030106	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p24.1	KLHL29	rs13030106-C	0.299	1E-8		0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
765	chr2	23681923	23681924	rs7558233	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	2p24.1	NR	rs7558233-T	NR	8E-6		0.48	[0.26-0.7] unit increase	NR [5896100] (imputed)	N
765	chr2	23684207	23684208	rs7586272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p24.1		rs7586272-?	NR	2E-9				NR [~ 8900000] (imputed)	N
765	chr2	23704643	23704644	rs4665216	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	2p24.1	KLHL29	rs4665216-G	0.7058	8E-7		0.5723	[0.35-0.8] unit decrease	Illumina [9520174] (imputed)	N
765	chr2	23704873	23704874	rs6728515	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	2p24.1	KLHL29	rs6728515-?	NR	7E-6		1.268116	[1.143717-1.406045]	Illumina [at least 4756722] (imputed)	N
765	chr2	23716542	23716543	rs6741991	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (motor)	2,848 individuals	NA	2p24.1	KLHL29	rs6741991-G	0.26	3E-6		0.2	[0.12-0.28] unit increase	Illumina [5918868] (imputed)	N
766	chr2	23726718	23726719	rs76832595	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p24.1	NR	rs76832595-A	NR	2E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
766	chr2	23733973	23733974	rs1653771	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p24.1		rs1653771-G	0.467	4E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
766	chr2	23750640	23750641	rs1709294	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2p24.1	NR	rs1709294-?	NR	2E-6	(EA)	10.016456	[5.97-14.06] unit decrease	Affymetrix [at least 600000] (imputed)	N
766	chr2	23801619	23801620	rs6544966	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	2p24.1		rs6544966-T	NR	7E-6		0.89	[0.84-0.94]	Illumina [7105229] (imputed)	N
767	chr2	23875989	23875990	rs4665624	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p24.1		rs4665624-?	NR	2E-8				NR [~ 8900000] (imputed)	N
767	chr2	23887436	23887437	rs1991083	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p24.1	NR	rs1991083-?	NR	6E-6	(female)	0.11766	[0.067-0.169] unit increase	Affymetrix [7794483] (imputed)	N
767	chr2	23887436	23887437	rs1991083	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p24.1	NR	rs1991083-?	NR	5E-13		0.1714	[0.12-0.22] unit increase	Affymetrix [7794483] (imputed)	N
767	chr2	23887436	23887437	rs1991083	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p24.1	NR	rs1991083-?	NR	2E-8	(male)	0.21106	[0.14-0.28] unit increase	Affymetrix [7794483] (imputed)	N
767	chr2	23887436	23887437	rs1991083	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	2p24.1	KLHL29, ATAD2B, UBXN2A	rs1991083-C	0.319485	8E-9		0.00453514	[0.003-0.0061] unit decrease	NR [NR] (imputed)	N
767	chr2	23891432	23891433	rs737665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p24.1	Intergenic	rs737665-A	0.8031	3E-8	(MTAG)	0.0115	[0.0074-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
767	chr2	23892322	23892323	rs72794276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p24.1	NR	rs72794276-T	NR	3E-9		0.0269	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr2	23893931	23893931	rs763423391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p24.1	KLHL29	rs763423391-TGGATG	NR	4E-11		0.0263368	[0.019-0.034] unit decrease	Affymetrix [321114] (imputed)	N
767	chr2	23895900	23895901	rs34668726	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p24.1	NR	rs34668726-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
767	chr2	23895900	23895901	rs34668726	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	2p24.1	KLHL29	rs34668726-C	NR	1E-8		0.0097909	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
767	chr2	23895900	23895901	rs34668726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p24.1		rs34668726-?	NR	1E-7				NR [~ 8900000] (imputed)	N
767	chr2	23895900	23895901	rs34668726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p24.1		rs34668726-?	NR	7E-9				NR [~ 8900000] (imputed)	N
767	chr2	23895900	23895901	rs34668726	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p24.1	NR	rs34668726-G	NR	1E-11		0.02109	[0.015-0.027] unit increase	Affymetrix [10847151] (imputed)	N
767	chr2	23895900	23895901	rs34668726	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2p24.1	KLHL29	rs34668726-C	0.164731	2E-12		7.02	z score decrease	NR [10847151] (imputed)	N
767	chr2	23896048	23896049	rs12713004	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p24.1	KLHL29	rs12713004-A	0.2746	2E-68		0.0367	[0.033-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
767	chr2	23896048	23896049	rs12713004	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p24.1	NR	rs12713004-G	0.724043	1E-14		0.0836878	[0.062-0.105] unit increase	Affymetrix [21375087] (imputed)	N
767	chr2	23896048	23896049	rs12713004	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p24.1	NR	rs12713004-G	0.726201	6E-16		0.0610284	[0.046-0.076] unit increase	Affymetrix [17914406] (imputed)	N
767	chr2	23896131	23896132	rs200560025	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs200560025-G	0.103635	2E-14				Affymetrix, Illumina [24558453] (imputed)	N
767	chr2	23896606	23896607	rs35082559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p24.1	KLHL29	rs35082559-C	0.2501	2E-10		0.02650809	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
767	chr2	23897724	23897725	rs56262900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p24.1		rs56262900-A	NR	2E-13		0.0223	[0.016-0.028] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
767	chr2	23897724	23897725	rs56262900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p24.1		rs56262900-A	NR	9E-13		0.0224	[0.016-0.028] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
767	chr2	23897724	23897725	rs56262900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p24.1	KLHL29	rs56262900-A	0.101602	3E-16		0.02987182	[0.023-0.037] unit increase	Affymetrix [93095623] (imputed)	N
767	chr2	23897724	23897725	rs56262900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p24.1	KLHL29	rs56262900-A	0.101594	9E-17		0.03043598	[0.023-0.038] unit increase	Affymetrix [93095623] (imputed)	N
767	chr2	23897724	23897725	rs56262900	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p24.1	KLHL29	rs56262900-A		3E-12		0.026	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
767	chr2	23897724	23897725	rs56262900	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p24.1	KLHL29	rs56262900-A	0.1027	2E-21		0.0557843	[0.044-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
767	chr2	23897724	23897725	rs56262900	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2p24.1	KLHL29	rs56262900-A	0.1027	2E-10		0.03746084	[0.026-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
767	chr2	23897724	23897725	rs56262900	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p24.1	KLHL29	rs56262900-A	0.1027	6E-9		0.03392624	[0.022-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
767	chr2	23898316	23898317	rs4665630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p24.1	NR	rs4665630-T	NR	3E-9		0.0228	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
767	chr2	23898316	23898317	rs4665630	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	2p24.1	NR	rs4665630-C	0.13	4E-8		5.48	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
767	chr2	23898316	23898317	rs4665630	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	2p24.1	KLHL29	rs4665630-?	0.49	1E-7		1.2135922	[1.13-1.3]	Affymetrix [~ 2740000] (imputed)	N
767	chr2	23898965	23898966	rs11125163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p24.1	Intergenic	rs11125163-T	0.549	7E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
767	chr2	23899806	23899807	rs6713865	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2p24.1	NR	rs6713865-A	0.18	3E-8		0.023	[0.015-0.031] z score increase	Affymetrix [up to 10400000] (imputed)	N
767	chr2	23899947	23899948	rs6714016	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p24.1	KLHL29	rs6714016-G	0.183	7E-11		0.03070206	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
767	chr2	23900628	23900629	rs56343114	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	2p24.1	WDCP	rs56343114-C	0.143745	6E-14		7.51	z score decrease	NR [10847151] (imputed)	N
767	chr2	23901361	23901362	rs72796106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p24.1		rs72796106-C	0.18	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
767	chr2	23901361	23901362	rs72796106	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p24.1	NR	rs72796106-C	0.1611	2E-9				NR [9056863] (imputed)	N
767	chr2	23901361	23901362	rs72796106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs72796106-A	0.833899	1E-25				Affymetrix, Illumina [17210439] (imputed)	N
767	chr2	23901361	23901362	rs72796106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs72796106-C	0.139649	8E-51				Affymetrix, Illumina [24246363] (imputed)	N
767	chr2	23901361	23901362	rs72796106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p24.1	NR	rs72796106-C	0.167706	2E-54		0.038009	[0.033-0.043] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
767	chr2	23901361	23901362	rs72796106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs72796106-C	0.137385	2E-27				Affymetrix, Illumina [20825802] (imputed)	N
767	chr2	23901361	23901362	rs72796106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p24.1	NR	rs72796106-C	0.167538	6E-31		0.029812	[0.025-0.035] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
767	chr2	23901361	23901362	rs72796106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p24.1		rs72796106-?	NR	4E-37				NR [~ 8900000] (imputed)	N
767	chr2	23903540	23903541	rs115697725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p24.1		rs115697725-G	NR	3E-25		0.0352	[0.029-0.042] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
767	chr2	23903540	23903541	rs115697725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p24.1	KLHL29	rs115697725-G	0.151392	3E-27		0.03388248	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
767	chr2	23903540	23903541	rs115697725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p24.1		rs115697725-?	NR	9E-50				NR [~ 8900000] (imputed)	N
767	chr2	23903556	23903557	rs146831114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p24.1	KLHL29	rs146831114-T	NR	2E-8		0.0427228	[0.028-0.058] unit decrease	Affymetrix [321114] (imputed)	N
767	chr2	23904232	23904233	rs181430167	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Systolic blood pressure	815 African ancestry early adolescents	NA	2p24.1	KLHL29	rs181430167-C	0.05	7E-7		4.62	[-13.4904-22.7304] unit increase	Illumina [20074711] (imputed)	N
767	chr2	23905880	23905881	rs11678903	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p24.1	NR	rs11678903-G	0.01568	1E-10	(CYP2E1)	0.4284	NR unit increase	Illumina [1671387] (imputed)	N
767	chr2	23912400	23912401	rs2551347	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2p24.1	KLHL29	rs2551347-T	0.749355	2E-16		0.02446	[0.019-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
767	chr2	23917720	23917721	rs2551353	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p24.1	KLHL29	rs2551353-T	NR	7E-11		0.02431	[0.017-0.032] unit decrease	Affymetrix [321114] (imputed)	N
767	chr2	23923903	23923903	rs144041441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p24.1		rs144041441-TCTGA	NR	5E-34		0.0359	[0.03-0.042] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
767	chr2	23923903	23923903	rs144041441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p24.1	NR	rs144041441-I	0.130291	5E-19		0.027028	[0.021-0.033] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
767	chr2	23933625	23933626	rs72796152	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p24.1	NR	rs72796152-A	0.141	3E-8		0.0122863	[0.008-0.0166] unit increase	NR [9732723] (imputed)	N
767	chr2	23934815	23934816	rs12470949	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p24.1	NR	rs12470949-T	NR	1E-8		5.683	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
767	chr2	23934815	23934816	rs12470949	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p24.1	NR	rs12470949-?	NR	2E-7		5.222	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr2	23942445	23942446	rs4665238	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p24.1	NR	rs4665238-A	0.585385801860433	1E-8		0.006544474	[0.0043-0.0088] unit decrease	NR [NR]	N
767	chr2	23942445	23942446	rs4665238	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p24.1	NR	rs4665238-A	0.585385801860433	1E-8		0.008551864	[0.0056-0.0115] unit decrease	NR [NR]	N
767	chr2	23942445	23942446	rs4665238	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p24.1	NR	rs4665238-A	0.585385801860433	1E-8		0.0054427534	[0.0036-0.0073] unit decrease	NR [NR]	N
767	chr2	23948465	23948466	rs918814	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p24.1	NR	rs918814-C	0.585634327422251	2E-8		0.0069587985	[0.0045-0.0094] unit decrease	NR [NR]	N
767	chr2	23948952	23948953	rs7608623	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p24.1	KLHL29	rs7608623-C	0.229	6E-7	(Total T4 )	0.03	[NR] ug/dL increase	Illumina [899892]	N
767	chr2	23950199	23950200	rs10779936	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	2p24.1	KLHL29	rs10779936-G	0.2871	1E-11		0.1526	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
767	chr2	23950972	23950973	rs61463699	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	2p24.1	NR	rs61463699-A	0.462	5E-7	(EA, men)	0.077	[0.048-0.106] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
767	chr2	23953075	23953076	rs72798041	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p24.1		rs72798041-C	0.14	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
767	chr2	23953075	23953076	rs72798041	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p24.1	NR	rs72798041-C	0.1234	1E-10				NR [9056863] (imputed)	N
767	chr2	23953075	23953076	rs72798041	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	2p24.1		rs72798041-T	0.872	2E-8				Affymetrix [10369434] (imputed)	N
767	chr2	23953453	23953454	rs112187834	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	2p24.1	NR	rs112187834-A	0.14	3E-9		0.033409726	[0.022-0.044] unit increase	NR [~ 10000000] (imputed)	N
767	chr2	23953832	23953833	rs9798012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p24.1		rs9798012-T	NR	4E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
767	chr2	23959130	23959131	rs2712056	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p24.1		rs2712056-T	0.1845	2E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
767	chr2	23962646	23962647	rs7575873	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2p24.1		rs7575873-A	0.87	5E-17				Affymetrix [10369434] (imputed)	N
767	chr2	23962646	23962647	rs7575873	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2p24.1		rs7575873-A	0.87	2E-43				Affymetrix [10369434] (imputed)	N
767	chr2	23962646	23962647	rs7575873	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	2p24.1	ATAD2B	rs7575873-A	0.88	6E-11		0.0362	[0.025-0.047] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
767	chr2	23963188	23963189	rs193292177	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	2p24.1	KLHL29	rs193292177-?	NR	5E-9	(Hispanic/Latino)	0.3769525	[0.25-0.5] unit decrease	Illumina [22871999] (imputed)	N
767	chr2	23963188	23963189	rs193292177	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	2p24.1	KLHL29	rs193292177-?	NR	4E-11		0.386	[0.27-0.5] unit decrease	Illumina [22871999] (imputed)	N
767	chr2	23963461	23963462	rs377110161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p24.1	NR	rs377110161-G	0.128436	3E-13		0.026485492	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
767	chr2	23963461	23963462	rs377110161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs377110161-G	0.1017	6E-34				Affymetrix, Illumina [24649327] (imputed)	N
767	chr2	23963461	23963462	rs377110161	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p24.1	NR	rs377110161-G	0.128318	2E-36		0.036659	[0.031-0.042] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
767	chr2	23965418	23965419	rs62125861	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p24.1	NR	rs62125861-T	0.770733	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
767	chr2	23973798	23973799	rs6751857	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p24.1	NR	rs6751857-?	NR	6E-8		0.0094529	[0.006-0.0129] unit increase	Affymetrix [805426] (imputed)	N
767	chr2	23975910	23975911	rs718139	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	2p24.1	NR	rs718139-A	0.12	3E-11		0.03890449	[0.027-0.05] unit decrease	NR [1977400] (imputed)	N
767	chr2	23975910	23975911	rs718139	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	2p24.1	NR	rs718139-A	0.208	2E-9		0.044864137	[0.03-0.06] unit decrease	NR [1977400] (imputed)	N
767	chr2	23984833	23984834	rs72780106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p24.1	NR	rs72780106-C	NR	1E-33		0.0518	[0.043-0.06] unit increase	Affymetrix [9000000] (imputed)	N
768	chr2	23989790	23989790	rs35692182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p24.1		rs35692182-GA	NR	4E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
768	chr2	23998019	23998020	rs115457386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	13,519 African American or Afro-Caribbean and African ancestry individuals	NA	2p24.1	NR	rs115457386-A	0.923586	2E-9		0.14324	[0.096-0.19] SD units decrease	Affymetrix, Illumina [36660117] (imputed)	N
768	chr2	23998091	23998092	rs74175027	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2p24.1	ATAD2B	rs74175027-?	NR	2E-11		0.472	[0.34-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
768	chr2	24007121	24007122	rs72780191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2p24.1	ATAD2B	rs72780191-C	0.1309	2E-19		0.0477607	[0.037-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
768	chr2	24018479	24018480	rs13009582	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.1	ATAD2B	rs13009582-A	0.4505	2E-11		0.0158	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
768	chr2	24018479	24018480	rs13009582	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p24.1	ATAD2B	rs13009582-A	0.4505	4E-11		0.0154	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
768	chr2	24021230	24021231	rs17509001	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	2p24.1	ATAD2B	rs17509001-C	0.1576	2E-15		0.0181	[0.014-0.023] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
768	chr2	24029927	24029928	rs55707417	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	2p23.3	MFSD2B	rs55707417-?	NR	1E-13		1.8	NR unit decrease	NR [14100000] (imputed)	N
768	chr2	24029927	24029928	rs55707417	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 7,586 non-Hispanic White ancestry individuals	NA	2p23.3	MFSD2B	rs55707417-?	NR	5E-8				NR [14100000] (imputed)	N
768	chr2	24030829	24030831	rs548850890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p23.3		rs548850890-A	NR	4E-28		0.0351	[0.029-0.041] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
768	chr2	24030829	24030831	rs548850890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p23.3		rs548850890-A	NR	4E-24		0.0323	[0.026-0.039] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
768	chr2	24030829	24030831	rs548850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.16732	6E-15		0.024338199	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24030829	24030831	rs548850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.167862	1E-17		0.025994323	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24030829	24030831	rs548850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.167504	3E-39		0.0364428	[0.031-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24030829	24030831	rs548850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.167365	3E-64		0.053298894	[0.047-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24030829	24030831	rs548850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.167366	5E-67		0.05438785	[0.048-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24030829	24030831	rs548850890	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p23.3	ATAD2B	rs548850890-A	0.1685	2E-19		0.04261831	[0.033-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
768	chr2	24034177	24034178	rs7564732	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	ATAD2B	rs7564732-T	0.1917	6E-6		0.0365	[0.021-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
768	chr2	24036221	24036222	rs7569424	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	2p23.3	NR	rs7569424-A	0.144838	3E-13		7.31	z score decrease	NR [10847151] (imputed)	N
768	chr2	24054646	24054647	rs35832626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs35832626-?	NR	3E-91				NR [~ 8900000] (imputed)	N
768	chr2	24054646	24054647	rs35832626	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	2p23.3	ATAD2B	rs35832626-T	0.416	1E-8	(EA, men)	0.09	[0.059-0.121] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
768	chr2	24060438	24060439	rs13006587	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs13006587-A	0.409272	2E-9		0.0581266	[0.039-0.078] unit increase	Affymetrix [21375087] (imputed)	N
768	chr2	24061033	24061034	rs6719830	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p23.3	ATAD2B	rs6719830-T	NR	3E-9		0.017316855	[0.012-0.023] unit decrease	Affymetrix [NR]	N
768	chr2	24062565	24062566	rs72786276	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p23.3	KLHL29	rs72786276-A	0.129617	3E-8		5.54	z score increase	NR [10847151] (imputed)	N
768	chr2	24063316	24063317	rs114006888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p23.3	NR	rs114006888-G	NR	2E-9		0.0614	[0.041-0.081] unit increase	Affymetrix [9000000] (imputed)	N
768	chr2	24066182	24066183	rs6718635	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2p23.3	NR	rs6718635-A	0.12969	1E-11		6.8	z score decrease	NR [10847151] (imputed)	N
768	chr2	24077978	24077979	rs117735241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p23.3		rs117735241-A	0.03589	1E-10		0.0350818	[0.024-0.046] unit decrease	Illumina [13479295] (imputed)	N
768	chr2	24077978	24077979	rs117735241	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.3	ATAD2B	rs117735241-?	NR	9E-12		0.05311157	[0.038-0.068] unit decrease	Illumina [27896057] (imputed)	N
768	chr2	24087094	24087095	rs142518269	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p23.3	ATAD2B	rs142518269-A	0.1308	5E-12		0.03615299	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
768	chr2	24091098	24091099	rs150221884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	ATAD2B	rs150221884-T	0.00462399999999996	5E-12		0.12106488	[0.087-0.155] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24091098	24091099	rs150221884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	ATAD2B	rs150221884-T	0.00462399999999996	3E-10		0.1106798	[0.076-0.145] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24091098	24091099	rs150221884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p23.3	ATAD2B	rs150221884-T	0.00465700000000002	2E-12		0.12322296	[0.089-0.157] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24091098	24091099	rs150221884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	ATAD2B	rs150221884-T	0.00462799999999997	2E-14		0.13337496	[0.099-0.168] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24091098	24091099	rs150221884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	ATAD2B	rs150221884-T	0.00462799999999997	2E-15		0.13809927	[0.1-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
768	chr2	24092772	24092773	rs2176263	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs2176263-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
768	chr2	24092772	24092773	rs2176263	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p23.3	ATAD2B	rs2176263-C	0.603	1E-13		0.0089	[0.0065-0.0113] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
768	chr2	24092772	24092773	rs2176263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p23.3	ATAD2B	rs2176263-C	NR	4E-8		0.016323796	[0.01-0.022] unit increase	Affymetrix [NR]	N
768	chr2	24093755	24093756	rs12612492	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2p23.3	ATAD2B	rs12612492-T	0.1249	2E-26		0.0188	[0.015-0.023] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
768	chr2	24097388	24097389	rs7566727	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	NR	rs7566727-?	NR	9E-8		0.0093347	[0.0059-0.0128] unit increase	Affymetrix [805426] (imputed)	N
768	chr2	24098320	24098321	rs72788286	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p23.3	NR	rs72788286-?	NR	1E-9		0.01967	[0.013-0.026] unit increase	Affymetrix [10847151] (imputed)	N
768	chr2	24102690	24102691	rs4665244	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p23.3	NR	rs4665244-A	NR	3E-8		5.571	z score increase	Affymetrix [10847151] (imputed)	N
768	chr2	24106444	24106445	rs150821390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs150821390-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
768	chr2	24112723	24112724	rs7594221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p23.3	ATAD2B	rs7594221-A	0.765024	9E-10		0.016673224	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24126903	24126904	rs6756419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p23.3	ATAD2B	rs6756419-G	0.626842	7E-9		0.013437344	[0.0089-0.018] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24137818	24137818	rs34357008	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	2p23.3	ATAD2B	rs34357008-?	0.0	2E-9				Affymetrix [547296]	N
769	chr2	24137818	24137818	rs34357008	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	2p23.3	ATAD2B	rs34357008-?	NR	7E-9				Affymetrix [547296]	N
769	chr2	24139519	24139520	rs12475813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p23.3		rs12475813-?	NR	2E-13				NR [~ 8900000] (imputed)	N
769	chr2	24144100	24144101	rs201165754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p23.3	ATAD2B	rs201165754-A	0.149614	2E-14		0.024214674	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24146518	24146519	rs768541348	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p23.3	NR	rs768541348-I	0.167827	8E-13		0.020078	[0.015-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
769	chr2	24154191	24154192	rs11674248	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.3	ATAD2B, UBXN2A	rs11674248-A	0.254	3E-6	(Total T4 )	0.03	[NR] ug/dL increase	Illumina [899892]	N
769	chr2	24154963	24154964	rs12621445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p23.3	UBXN2A	rs12621445-T	0.1357	4E-46		0.07371215	[0.064-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24168187	24168188	rs60490158	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	2p23.3	NR	rs60490158-A	0.459	5E-7	(EA, men)	0.077	[0.048-0.106] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
769	chr2	24174294	24174295	rs200742198	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs200742198-G	0.14942	7E-14		0.102754	[0.076-0.129] unit decrease	Affymetrix [21375087] (imputed)	N
769	chr2	24175524	24175525	rs11342032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p23.3	UBXN2A	rs11342032-A	0.141952	1E-12		0.022923583	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24180077	24180078	rs72796401	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p23.3	UBXN2A	rs72796401-A	0.1903	7E-13		1.0249051		Affymetrix [11880941] (imputed)	N
769	chr2	24180103	24180104	rs72796402	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2p23.3	NR	rs72796402-A	0.132247	6E-12		6.89	z score decrease	NR [10847151] (imputed)	N
769	chr2	24180124	24180125	rs72798404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p23.3	UBXN2A	rs72798404-T	0.13425	5E-23		0.03388863	[0.027-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24180124	24180125	rs72798404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p23.3	UBXN2A	rs72798404-T	0.133947	7E-26		0.034439344	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24187085	24187086	rs11125333	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs11125333-T	0.544618	7E-9		0.0589462	[0.039-0.079] unit increase	Affymetrix [21375087] (imputed)	N
769	chr2	24188127	24188128	rs55982282	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2p23.3		rs55982282-G	0.865	2E-39				Affymetrix [10369434] (imputed)	N
769	chr2	24188127	24188128	rs55982282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p23.3	NR	rs55982282-A	0.135291	9E-110		0.061557	[0.056-0.067] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
769	chr2	24196509	24196509	rs548688766	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p23.3	UBXN2A	rs548688766-CT	NR	3E-8		0.0281018	[0.018-0.039] unit decrease	Affymetrix [16832071] (imputed)	N
769	chr2	24196887	24196887	rs70944705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p23.3	UBXN2A	rs70944705-AT	0.491867	6E-11		0.0140784	[0.0096-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24198341	24198342	rs72781632	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p23.3	NR	rs72781632-A	0.132741	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
769	chr2	24202511	24202512	rs10432638	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	2p23.3	UBXN2A	rs10432638-?	NR	8E-6		1.1235955	[NR]	Affymetrix, Illumina [NR] (imputed)	N
769	chr2	24202511	24202512	rs10432638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p23.3	Intergenic	rs10432638-A	0.3763	1E-8	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
769	chr2	24208745	24208746	rs72781643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p23.3		rs72781643-A	NR	7E-12		0.0214	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
769	chr2	24210076	24210080	rs147649347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.135657	3E-68		0.06091403	[0.054-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24210076	24210080	rs147649347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.135662	1E-51		0.05261564	[0.046-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24210076	24210080	rs147649347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.135622	4E-94		0.07147117	[0.065-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24210076	24210080	rs147649347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.1361	3E-44		0.07288792	[0.063-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24210076	24210080	rs147649347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.1361	2E-32		0.06186967	[0.052-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24210076	24210080	rs147649347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.136	3E-60		0.08539662	[0.075-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24210076	24210080	rs147649347	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p23.3	UBXN2A	rs147649347-G	0.136	2E-51		0.07865389	[0.068-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24211549	24211550	rs12616250	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	2p23.3	NR	rs12616250-T	0.148882	3E-13		7.29	z score decrease	NR [10847151] (imputed)	N
769	chr2	24215394	24215395	rs4643489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p23.3	UBXN2A	rs4643489-T	0.750823	2E-25		0.027599758	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24221316	24221317	rs56205282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs56205282-T	0.116458	9E-110				Affymetrix, Illumina [23472807] (imputed)	N
769	chr2	24223085	24223086	rs72781665	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p23.3	UBXN2A	rs72781665-A		1E-10		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
769	chr2	24225666	24225667	rs72781667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs72781667-G	0.12032	7E-18				Affymetrix, Illumina [24588908] (imputed)	N
769	chr2	24225666	24225667	rs72781667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p23.3	NR	rs72781667-G	0.150198	3E-19		0.023402	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
769	chr2	24227356	24227357	rs113362373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.3	UBXN2A	rs113362373-G	0.135088	2E-18		0.029082365	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24227356	24227357	rs113362373	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs113362373-G	0.109241	1E-53				Affymetrix, Illumina [24332387] (imputed)	N
769	chr2	24227356	24227357	rs113362373	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs113362373-G	0.10991	1E-17				Affymetrix, Illumina [24653286] (imputed)	N
769	chr2	24227479	24227480	rs7422667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p23.3	NR	rs7422667-C	0.563674451797384	2E-10		0.0059271827	[0.0041-0.0077] unit decrease	NR [NR]	N
769	chr2	24227479	24227480	rs7422667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p23.3	NR	rs7422667-C	0.563674451797384	2E-10		0.0072811074	[0.005-0.0095] unit decrease	NR [NR]	N
769	chr2	24227479	24227480	rs7422667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p23.3	NR	rs7422667-C	0.563674451797384	1E-10		0.009500858	[0.0066-0.0124] unit decrease	NR [NR]	N
769	chr2	24227479	24227480	rs7422667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p23.3	NR	rs7422667-C	0.563674451797384	3E-10		0.0077506206	[0.0053-0.0102] unit decrease	NR [NR]	N
769	chr2	24227479	24227480	rs7422667	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p23.3	NR	rs7422667-C	0.563674451797384	1E-10		0.0060619046	[0.0042-0.0079] unit decrease	NR [NR]	N
769	chr2	24230632	24230633	rs56068891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p23.3	MFSD2B	rs56068891-G	0.1356	4E-21		0.04897646	[0.039-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24231122	24231123	rs72781671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p23.3	MFSD2B	rs72781671-G	0.134836	2E-59		0.055341475	[0.049-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24231122	24231123	rs72781671	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p23.3	NR	rs72781671-G	0.134674	9E-56		0.042697	[0.037-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
769	chr2	24234439	24234440	rs925229	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	MFSD2B	rs925229-?	NR	5E-8		0.0095239	[0.0061-0.0129] unit increase	Affymetrix [805426] (imputed)	N
769	chr2	24234973	24234974	rs2339938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p23.3	MFSD2B	rs2339938-C	0.757759	3E-27		0.029259505	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24235146	24235147	rs77959151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	MFSD2B	rs77959151-T	NR	4E-8		0.02351	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
769	chr2	24235146	24235147	rs77959151	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs77959151-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
769	chr2	24236235	24236236	rs11887523	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	3,224 African American or Afro-Caribbean individuals	NA	2p23.3		rs11887523-A	0.0814	3E-8		0.2678	[0.17-0.36] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
769	chr2	24236235	24236236	rs11887523	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	2p23.3		rs11887523-A	0.0507	6E-15		0.2949	[0.22-0.37] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
769	chr2	24236235	24236236	rs11887523	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	2p23.3		rs11887523-A	0.0151	5E-8		0.3393	[0.22-0.46] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
769	chr2	24236495	24236496	rs56036119	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	MFSD2B	rs56036119-A	NR	2E-8		0.0239878	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
769	chr2	24236495	24236496	rs56036119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs56036119-A	0.12343	7E-12		0.024448222	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24236495	24236496	rs56036119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	MFSD2B	rs56036119-A	0.123426	1E-10		0.022942083	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24236495	24236496	rs56036119	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs56036119-A	0.123512	4E-16		0.028845038	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24237711	24237712	rs72781679	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p23.3		rs72781679-A	0.15	3E-15		7.89	z score increase	Affymetrix [9061022] (imputed)	N
769	chr2	24237711	24237712	rs72781679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p23.3		rs72781679-A	NR	1E-61		0.0568	[0.05-0.063] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
769	chr2	24237711	24237712	rs72781679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p23.3		rs72781679-A	NR	2E-53		0.0512	[0.045-0.058] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
769	chr2	24237711	24237712	rs72781679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p23.3	MFSD2B	rs72781679-A	0.134852	3E-41		0.04340858	[0.037-0.05] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24237711	24237712	rs72781679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p23.3	MFSD2B	rs72781679-A	0.134873	1E-60		0.0544887	[0.048-0.061] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24237711	24237712	rs72781679	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs72781679-A	0.134001	2E-12		0.0714728	[0.052-0.091] unit decrease	Affymetrix [17914406] (imputed)	N
769	chr2	24238927	24238928	rs72781680	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2p23.3		rs72781680-C	0.865	2E-57				Affymetrix [10369434] (imputed)	N
769	chr2	24238927	24238928	rs72781680	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2p23.3	MFSD2B	rs72781680-T	0.1355	9E-40		0.06930646	[0.059-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24239189	24239189	rs113601626	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2p23.3	MFSD2B	rs113601626-TCCTGGC	0.1352	7E-13		0.03731268	[0.027-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24240995	24240996	rs10865254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2p23.3		rs10865254-?	NR	5E-8				Affymetrix [NR] (imputed)	N
769	chr2	24240995	24240996	rs10865254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2p23.3		rs10865254-G	0.262	3E-15				Affymetrix [10369434] (imputed)	N
769	chr2	24240995	24240996	rs10865254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	2p23.3		rs10865254-?	NR	5E-8				Affymetrix [NR] (imputed)	N
769	chr2	24240995	24240996	rs10865254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2p23.3		rs10865254-?	NR	5E-8				Affymetrix [NR] (imputed)	N
769	chr2	24240995	24240996	rs10865254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p23.3	MFSD2B	rs10865254-T	0.738534	2E-9		0.015901696	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24240995	24240996	rs10865254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs10865254-T	0.738358	3E-17		0.021465866	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24240995	24240996	rs10865254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs10865254-T	0.738353	7E-16		0.02087998	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24240995	24240996	rs10865254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p23.3	MFSD2B	rs10865254-T	0.73834	2E-10		0.016379593	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
769	chr2	24245712	24245713	rs138903557	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	2p23.3		rs138903557-?	NR	3E-24		0.141145	[0.11-0.17] unit decrease	NR [9800000] (imputed)	N
769	chr2	24245712	24245713	rs138903557	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	2p23.3		rs138903557-?	NR	3E-36		0.173172	[0.15-0.2] unit decrease	NR [9800000] (imputed)	N
769	chr2	24245712	24245713	rs138903557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p23.3	MFSD2B	rs138903557-G	0.00453400000000004	2E-11		0.12048831	[0.085-0.156] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24245712	24245713	rs138903557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p23.3	MFSD2B	rs138903557-G	0.00451100000000004	4E-9		0.10444614	[0.07-0.139] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24245712	24245713	rs138903557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p23.3	MFSD2B	rs138903557-G	0.00449599999999994	2E-11		0.11879026	[0.084-0.154] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24246678	24246679	rs925228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p23.3	MFSD2B	rs925228-G	0.7643	9E-20		0.0384053	[0.03-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24246678	24246679	rs925228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p23.3	MFSD2B	rs925228-G	0.7643	2E-15		0.03361199	[0.025-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24247513	24247514	rs7561273	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	2p23.3	ENSG00000173957, UBXD4, FKBP1B, FLJ21945	rs7561273-A	0.35	6E-6	(CRP)	0.22	[NR] mg/L decrease	Affymetrix [408775]	N
769	chr2	24247817	24247818	rs7561675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.763078	6E-19		0.024909804	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24247817	24247818	rs7561675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.76308	3E-16		0.022922479	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24247817	24247818	rs7561675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.763053	8E-25		0.028606283	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24247817	24247818	rs7561675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.763066	9E-31		0.03125821	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr2	24247817	24247818	rs7561675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.7639	5E-27		0.04504605	[0.037-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24247817	24247818	rs7561675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.7638	1E-29		0.04777452	[0.039-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
769	chr2	24247817	24247818	rs7561675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p23.3	MFSD2B	rs7561675-G	0.7639	4E-26		0.04471554	[0.036-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
770	chr2	24250022	24250023	rs4665652	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	MFSD2B	rs4665652-A	0.5332	3E-7		0.0325	[0.02-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
770	chr2	24257050	24257051	rs10194817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs10194817-A	0.13953	3E-11				Affymetrix, Illumina [22063850] (imputed)	N
770	chr2	24257050	24257051	rs10194817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p23.3		rs10194817-?	NR	3E-13				NR [~ 8900000] (imputed)	N
770	chr2	24257444	24257444	rs70944707	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	2p23.3	FKBP1B	rs70944707-C	0.23	2E-8		0.03	[0.02-0.04] unit increase	NR [16760980] (imputed)	N
770	chr2	24262059	24262060	rs3731620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p23.3	NR	rs3731620-A	NR	4E-15		0.0274	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
770	chr2	24269998	24269999	rs75745192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs75745192-?	NR	2E-10				NR [~ 8900000] (imputed)	N
770	chr2	24277708	24277709	rs72781699	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p23.3	NR	rs72781699-?		3E-12		0.0186804	[0.013-0.024] unit decrease	Affymetrix [19400418] (imputed)	N
770	chr2	24291512	24291513	rs80094387	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p23.3	NR	rs80094387-A	NR	4E-9		0.0508	[0.034-0.068] unit increase	Affymetrix [9000000] (imputed)	N
770	chr2	24361961	24361962	rs12613951	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	NR	rs12613951-?	NR	2E-7		0.0090864	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
771	chr2	24387531	24387532	rs36101491	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.3	FAM228B, RP11-507M3.1	rs36101491-T	0.296572	6E-20		0.022091502	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
771	chr2	24387531	24387532	rs36101491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs36101491-T	0.263192	4E-21				Affymetrix, Illumina [23114412] (imputed)	N
771	chr2	24387531	24387532	rs36101491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p23.3	NR	rs36101491-T	0.294234	1E-23		0.021071	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
771	chr2	24388608	24388609	rs72789910	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p23.3	NR	rs72789910-?	NR	4E-10		0.01638	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
771	chr2	24409902	24409903	rs56006260	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2p23.3	ITSN2	rs56006260-A	0.256005	2E-9		5.99	z score decrease	NR [10847151] (imputed)	N
771	chr2	24419978	24419979	rs199957050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p23.3		rs199957050-A	NR	1E-17		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
771	chr2	24419978	24419979	rs199957050	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2p23.3		rs199957050-G	0.677	3E-16				Affymetrix [10369434] (imputed)	N
771	chr2	24419978	24419979	rs199957050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.3	FAM228A	rs199957050-A	0.322547	2E-11		0.017335638	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
771	chr2	24422901	24422902	rs72793967	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs72793967-T	0.277254	4E-9		0.0631013	[0.042-0.084] unit decrease	Affymetrix [21375087] (imputed)	N
771	chr2	24429512	24429513	rs12472142	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs12472142-G	0.535141	3E-8		0.0536933	[0.035-0.073] unit increase	Affymetrix [21375087] (imputed)	N
771	chr2	24437547	24437548	rs2551181	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs2551181-T	0.708097	1E-14		0.0579624	[0.043-0.073] unit increase	Affymetrix [17914406] (imputed)	N
771	chr2	24446041	24446042	rs2543666	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	ITSN2	rs2543666-T	0.7072	1E-27		0.0224	[0.018-0.027] unit increase	Affymetrix [18391927] (imputed)	N
771	chr2	24468131	24468132	rs4665675	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	NR	rs4665675-?	NR	2E-7		0.0091034	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
771	chr2	24477053	24477054	rs75009721	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p23.3	Intergenic	rs75009721-T	NR	2E-8	(between families)	5.66	unit increase	Affymetrix [up to 15107142] (imputed)	N
771	chr2	24489968	24489969	rs77907512	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p23.3	ITSN2	rs77907512-?	NR	5E-11		0.0283	[0.021-0.036] unit increase	Affymetrix [5701386] (imputed)	N
771	chr2	24490412	24490413	rs4268898	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	2p23.3	ITSN2, C2orf84, NCOA1	rs4268898-C	0.43999999999999995	2E-7	(African)	1.2658228		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
771	chr2	24496895	24496896	rs11680810	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	2p23.3	NR	rs11680810-T	0.194	5E-6	(EA, men)	0.099	[0.056-0.142] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
772	chr2	24521765	24521766	rs6707600	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	2p23.3	ITSN2	rs6707600-?	0.02	3E-6	(olanzapine)			Affymetrix [492900]	N
772	chr2	24524724	24524725	rs72793213	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2p23.3	NR	rs72793213-A	0.268753	2E-8		5.58	z score decrease	NR [10847151] (imputed)	N
772	chr2	24569240	24569241	rs774254956	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	ITSN2	rs774254956-?		5E-12		2.0168	[1.45-2.59] unit decrease	Illumina [31500000] (imputed)	N
772	chr2	24569240	24569241	rs774254956	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	ITSN2	rs774254956-?		4E-13		2.0643	[1.51-2.62] unit decrease	Illumina [31500000] (imputed)	N
772	chr2	24576413	24576414	rs112679361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.3		rs112679361-?	NR	2E-31				NR [~ 8900000] (imputed)	N
772	chr2	24595175	24595176	rs79471827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.3		rs79471827-?	NR	3E-10				NR [~ 8900000] (imputed)	N
772	chr2	24599879	24599880	rs201399927	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2p23.3	intergenic	rs201399927-A	0.2851	2E-9		0.02455356	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
772	chr2	24599879	24599880	rs201399927	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2p23.3	intergenic	rs201399927-A	0.2851	3E-9		0.02427249	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
772	chr2	24605031	24605032	rs11695528	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	NR	rs11695528-?	NR	1E-7		0.0092694	[0.0059-0.0127] unit increase	Affymetrix [805426] (imputed)	N
773	chr2	24658793	24658794	rs1545257	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,158 European ancestry cases, 3,071 European ancestry controls	2p23.3	ITSN2	rs1545257-C	0.52	2E-6		1.2345679	[1.10-1.41]	Illumina [648937]	N
773	chr2	24677865	24677866	rs10180416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p23.3		rs10180416-C	0.49499	5E-12		0.015343885	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
773	chr2	24677865	24677866	rs10180416	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p23.3	intergenic	rs10180416-C	0.494981	2E-9		0.013161886	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
773	chr2	24678665	24678666	rs10191849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p23.3	NR	rs10191849-C	0.49487	7E-11		0.012246	[0.0086-0.0159] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
773	chr2	24689142	24689143	rs75971153	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative fat intake	175,253 European ancestry individuals	93,179 European ancestry individuals	2p23.3	NR	rs75971153-?		4E-7		0.018	[0.01-0.026] unit decrease	Affymetrix [NR]	N
773	chr2	24689511	24689512	rs2702068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	NCOA1	rs2702068-A	NR	5E-9		0.0237223	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
773	chr2	24692808	24692809	rs2165738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	2p23.3		rs2165738-G	NR	1E-8		0.1304	[0.086-0.175] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
773	chr2	24692808	24692809	rs2165738	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	2p23.3	intergenic	rs2165738-C	0.27	4E-6		1.07	[1.01-1.13]	Affymetrix [up to 335565]	N
773	chr2	24694471	24694472	rs79480871	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	2p23.3	NCOA1, ITSN2	rs79480871-T	0.062	4E-8		1.34	[1.21-1.49]	Illumina [8363971] (imputed)	N
773	chr2	24697897	24697898	rs76066823	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs76066823-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
773	chr2	24729638	24729639	rs62140840	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p23.3	ITSN2, NCOA1	rs62140840-T	0.108935656	6E-6		1.1187994	[1.065787611-1.174448167]	Illumina [10439017] (imputed)	N
773	chr2	24730587	24730588	rs1822298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs1822298-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
773	chr2	24737832	24737833	rs2044148	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p23.3	NR	rs2044148-G	NR	3E-10		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
773	chr2	24737832	24737833	rs2044148	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	NCOA1	rs2044148-A	0.2072	2E-8		0.0249	[0.016-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
773	chr2	24737832	24737833	rs2044148	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	NCOA1	rs2044148-?	0.2072	7E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
773	chr2	24739694	24739694	rs200648189	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer	14,135 European ancestry ER- cases, 58,126 European ancestry controls, 7,784 European ancestry  BRCA1 carrrier cases, 7,782 European ancestry BRCA1 carrrier controls	7,333 European ancestry ER- cases, 42,468 European ancestry controls, 1,630 European ancestry BRCA1 carrrier cases, 1,712 European ancestry BRCA1 carrrier controls	2p23.3	NCOA1	rs200648189-CT	0.81	1E-8		1.0638298	[1.03-1.1] (BCAC)	Illumina [~ 11500000] (imputed)	N
773	chr2	24739694	24739694	rs200648189	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast Cancer in BRCA1 mutation carriers	7,784 European ancestry carrier cases, 7,782 European ancestry carrier controls	1,630 European ancestry carrier cases, 1,712 European ancestry carrier controls	2p23.3	NCOA1	rs200648189-CT	0.8	3E-7		1.1363636	[1.09-1.19]	Illumina [~ 11500000] (imputed)	N
773	chr2	24758720	24758721	rs11902506	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p23.3	ITSN2, NCOA1	rs11902506-A	0.315041553	4E-6		1.0599538	[1.034031535-1.086526017]	Illumina [10439017] (imputed)	N
774	chr2	24787426	24787427	rs188671617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs188671617-?	NR	6E-16				NR [~ 8900000] (imputed)	N
774	chr2	24794213	24794214	rs77012907	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p23.3	NCOA1	rs77012907-A	0.9098	1E-8		0.003	[0.002-0.004] unit increase	Affymetrix [15275733] (imputed)	N
774	chr2	24807532	24807533	rs11688048	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs11688048-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
774	chr2	24840524	24840525	rs55783347	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	2p23.3	NCOA1	rs55783347-?	NR	1E-7		0.085	[0.054-0.116] unit decrease	Affymetrix, Illumina [8037763] (imputed)	N
775	chr2	24904220	24904220	rs199832931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	NCOA1	rs199832931-GA	NR	4E-8		0.0457262	[0.029-0.062] unit decrease	Affymetrix [321114] (imputed)	N
775	chr2	24928578	24928579	rs2289393	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p23.3	NCOA1	rs2289393-C	0.267427487	2E-6		1.064274	[1.03704043-1.092222675]	Illumina [10439017] (imputed)	N
775	chr2	24952740	24952740	rs11439247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	NCOA1	rs11439247-C	NR	1E-8		0.0273703	[0.018-0.037] unit decrease	Affymetrix [319769] (imputed)	N
775	chr2	24952740	24952740	rs11439247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	NCOA1	rs11439247-C	NR	9E-10		0.0292799	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
775	chr2	24962136	24962137	rs10865308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs10865308-?	NR	7E-39				NR [~ 8900000] (imputed)	N
775	chr2	24967723	24967724	rs2083389	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2p23.3	NCOA1	rs2083389-C	0.252766371	9E-6		1.0861121	[1.047160026-1.126513142]	Illumina [10439017] (imputed)	N
775	chr2	24971175	24971176	rs6710503	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p23.3	NR	rs6710503-A	0.2615	5E-6	(EA)	0.0323	[0.018-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
775	chr2	24971175	24971176	rs6710503	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p23.3	NCOA1	rs6710503-A	0.259856384	4E-6		1.08137	[1.046065996-1.117865481]	Illumina [10439017] (imputed)	N
775	chr2	24990081	24990082	rs11892043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	NCOA1	rs11892043-G	NR	8E-9		0.0183499	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
775	chr2	24990081	24990082	rs11892043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p23.3	NR	rs11892043-A	0.728129	2E-11		0.0215553	[0.015-0.028] unit increase	Affymetrix [16580851] (imputed)	N
775	chr2	24990081	24990082	rs11892043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs11892043-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
775	chr2	24990081	24990082	rs11892043	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs11892043-?	NR	3E-24				Affymetrix [~ 8270000] (imputed)	N
775	chr2	25000900	25000901	rs2076885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	NCOA1	rs2076885-A	NR	3E-9		0.019807	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
775	chr2	25004936	25004937	rs62144584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p23.3	NR	rs62144584-T	0.728206	2E-10		0.0188548	[0.013-0.024] unit increase	Affymetrix [16585745] (imputed)	N
775	chr2	25017859	25017860	rs4665719	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2p23.3	CENPO	rs4665719-G	0.25	3E-9		1.08		Illumina [161311]	N
775	chr2	25022597	25022598	rs1550116	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	2p23.3	CENPO	rs1550116-?		8E-6	(endpoint 5, East Asian, additive)	1.7857143	[NR]	Illumina [> 750000]	N
775	chr2	25030300	25030301	rs76114856	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs76114856-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
775	chr2	25030300	25030301	rs76114856	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	2p23.3	CENPO	rs76114856-?	NR	7E-9		0.093	[0.062-0.124] unit decrease	Affymetrix, Illumina [8037763] (imputed)	N
775	chr2	25031105	25031106	rs34294368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p23.3		rs34294368-?	NR	6E-8				NR [~ 8900000] (imputed)	N
776	chr2	25036857	25036858	rs11895026	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p23.3	CENPO, ADCY3, POMC	rs11895026-A	0.24	1E-13		1.19	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
776	chr2	25038267	25038268	rs2082881	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	2p23.3	Intergenic	rs2082881-?		7E-6	(endpoint 5, East Asian, additive)	1.7857143	[NR]	Illumina [> 750000]	N
776	chr2	25038267	25038268	rs2082881	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2p23.3	CENPO	rs2082881-A	0.7545	2E-6		0.0754	[0.044-0.106] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25038267	25038268	rs2082881	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2p23.3	CENPO	rs2082881-A	0.7568	4E-8		0.0747	[0.048-0.101] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25039803	25039804	rs2099505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	CENPO	rs2099505-G	NR	7E-14		0.0363174	[0.027-0.046] unit decrease	Affymetrix [321114] (imputed)	N
776	chr2	25040081	25040082	rs2278483	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p23.3	CENPO	rs2278483-T	0.235	8E-33		0.041	[0.035-0.047] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
776	chr2	25041619	25041620	rs1550115	30972912	Wei L	2019-04-10	J Viral Hepat	Genetic variation in FCER1A predicts peginterferon alfa-2a-induced hepatitis B surface antigen clearance in East Asian patients with chronic hepatitis B.	Peginterferon alfa-2a treatment response in chronic hepatitis B infection	up to 1,108 East Asian cases, up to 465 European ancestry cases, up to 63 cases	NA	2p23.3	Intergenic	rs1550115-?		7E-6	(endpoint 5, East Asian, additive)	1.7857143	[NR]	Illumina [> 750000]	N
776	chr2	25041619	25041620	rs1550115	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p23.3	ADCY3, CENPO	rs1550115-T	0.7413	3E-7		0.0321	[0.02-0.044] unit decrease	NR [8041861] (imputed)	N
776	chr2	25042621	25042622	rs7945	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	ADCY3, CENPO	rs7945-A	0.7727	3E-7		0.0389	[0.024-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25052176	25052177	rs11125803	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p23.3	ADCY3	rs11125803-C	NR	5E-10		1.0708932	NR	Affymetrix, Illumina [8278136] (imputed)	N
776	chr2	25052176	25052177	rs11125803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p23.3		rs11125803-?	NR	2E-10				NR [~ 8900000] (imputed)	N
776	chr2	25053827	25053828	rs1056074	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	ADCY3	rs1056074-T	0.8225	1E-11		0.0163	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
776	chr2	25056498	25056499	rs13416733	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs13416733-C	0.152017	9E-9		0.0536164	[0.035-0.072] unit decrease	Affymetrix [17914406] (imputed)	N
776	chr2	25056585	25056585	rs398090202	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.3	ADCY3	rs398090202-?	NR	1E-13		0.028994659	[0.021-0.037] unit decrease	Illumina [27896057] (imputed)	N
776	chr2	25070991	25070992	rs62140608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	ADCY3	rs62140608-C	NR	1E-12		0.0227681	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
776	chr2	25072326	25072326	rs143971567	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	2p23.3	NR	rs143971567-?	NR	6E-6		0.1996	[0.11-0.29] unit increase	Illumina [at least 560000] (imputed)	N
776	chr2	25076403	25076404	rs61117682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	ADCY3	rs61117682-T	NR	5E-14		0.0228268	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
776	chr2	25086826	25086827	rs1529897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p23.3	NA	rs1529897-T	0.5704	1E-72		0.0307	[0.027-0.034] unit decrease	NR [~ 27400000] (imputed)	N
776	chr2	25091721	25091721	rs35609705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	ADCY3	rs35609705-TA	0.421993	1E-11		0.01555788	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
776	chr2	25091721	25091721	rs35609705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p23.3	ADCY3	rs35609705-TA	0.4222	4E-9		0.02149007	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
776	chr2	25091721	25091721	rs35609705	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p23.3	ADCY3	rs35609705-TA	0.4222	5E-10		0.02266735	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
776	chr2	25097643	25097644	rs13407913	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2p23.3	ADCY3, DNAJC27, EFR3B, DNMT3A, POMC	rs13407913-?		3E-7				Illumina [9725440] (imputed)	N
776	chr2	25097643	25097644	rs13407913	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2p23.3	POMC, ADCY3, DNAJC27, EFR3B, DNMT3A	rs13407913-?		9E-8				Illumina [9560910] (imputed)	N
776	chr2	25097643	25097644	rs13407913	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p23.3	ADCY3	rs13407913-?	NR	3E-18	(subset analysis)			Illumina [130052]	N
776	chr2	25097643	25097644	rs13407913	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.3	NR	rs13407913-G	0.4306	9E-8	(EA)	1.0690905	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
776	chr2	25097643	25097644	rs13407913	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.3	NR	rs13407913-G	0.4306	2E-20	(EA)	1.0960438	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
776	chr2	25097643	25097644	rs13407913	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.3	NR	rs13407913-G	0.4306	1E-21	(EA)	1.1213214	[1.1-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
776	chr2	25099493	25099494	rs78372398	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	ADCY3	rs78372398-A	NR	4E-8		0.0286247	[0.018-0.039] unit increase	Affymetrix [321016] (imputed)	N
776	chr2	25103107	25103108	rs2033654	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	2p23.3	ADCY3	rs2033654-A	0.42	2E-6	(Children)			Illumina [up to 527642]	N
776	chr2	25106225	25106226	rs34488542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p23.3		rs34488542-T	NR	1E-14		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
776	chr2	25116976	25116977	rs7586879	23583978	Monda KL	2013-04-14	Nat Genet	A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.	Body mass index	37,956 African American individuals, 1,188 Nigerian ancestry individuals	27,661 African America/Afro-Caribbean individuals, 4,607 Sub-Saharan African ancestry individuals, 123,706 European ancestry inidividuals	2p23.3	ADCY3	rs7586879-T	0.34	4E-8	(AA and Sub-Saharan)	0.047	[0.029-0.065] unit increase	Affymetrix, Illumina [3283202] (imputed)	N
776	chr2	25117214	25117215	rs28836469	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2p23.3	ADCY3	rs28836469-A	0.5612	7E-10		0.0843	[0.057-0.111] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25117214	25117215	rs28836469	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2p23.3	ADCY3	rs28836469-A	0.5635	3E-12		0.0821	[0.059-0.105] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25118884	25118885	rs6545800	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p23.3	ADCY3	rs6545800-T	0.445	6E-16		1.109	[1.077-1.141]	Affymetrix, Illumina [1230000] (imputed)	N
776	chr2	25122323	25122324	rs6718511	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p23.3	ADCY3	rs6718511-A	0.557	1E-8		1.02112		Affymetrix [11880941] (imputed)	N
776	chr2	25122839	25122840	rs4077678	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2p23.3	NR	rs4077678-C	NR	1E-11	(EA)	0.1306	[0.093-0.168] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
776	chr2	25122839	25122840	rs4077678	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p23.3	ADCY3	rs4077678-C	0.5595	2E-12		0.0452	[0.032-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
776	chr2	25129472	25129473	rs6725517	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2p23.3		rs6725517-A	NR	5E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
776	chr2	25129472	25129473	rs6725517	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p23.3	ADCY3	rs6725517-A	0.59	3E-12	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
776	chr2	25130450	25130451	rs11689546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	ADCY3	rs11689546-G	NR	1E-10		0.0183604	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
776	chr2	25130461	25130462	rs10200566	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference variance	346,781 European ancestry individuals	NA	2p23.3	ADCY3	rs10200566-?	NR	2E-10				NR [5554549] (imputed)	N
776	chr2	25130461	25130462	rs10200566	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Hip circumference	346,781 European ancestry individuals	NA	2p23.3	ADCY3	rs10200566-?	NR	2E-18				NR [5554549] (imputed)	N
776	chr2	25130541	25130542	rs10198275	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	ADCY3	rs10198275-A		8E-6		0.171	unit increase	Affymetrix [at least 2696785] (imputed)	N
776	chr2	25130541	25130542	rs10198275	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	ADCY3	rs10198275-A		6E-9		0.135	unit increase	Affymetrix [at least 2696785] (imputed)	N
776	chr2	25131169	25131170	rs6718628	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	2p23.3		rs6718628-?	NR	1E-10		0.041	[0.029-0.053] unit increase	Affymetrix [9906178] (imputed)	N
776	chr2	25131315	25131316	rs6545814	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	2p23.3	ADCY3, RBJ	rs6545814-G	0.45	1E-10		0.0331	[0.023-0.043] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
776	chr2	25131315	25131316	rs6545814	22344219	Wen W	2012-02-19	Nat Genet	Meta-analysis identifies common variants associated with body mass index in east Asians.	Body mass index	22,762 East Asian ancestry individuals, 2,522 Malay ancestry individuals, 2,431 Chinese, Malay and Asian Indian ancestry individuals	53,215 East Asian ancestry results, 2,118 Malay ancestry individuals	2p23.3	ADCY3, DNAJC27	rs6545814-G	0.45	1E-13		3.26	[1.77-4.75] % increase	Affymetrix, Illumina [2474474] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 8 months old	7,197 Norwegian ancestry individuals	3,966 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	2E-9		0.081	[0.054-0.108] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 6 months old	8,017 Norwegian ancestry individuals	4,516 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	3E-9		0.076	[0.051-0.101] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 5 years old	4,245 Norwegian ancestry individuals	2,209 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	4E-6		0.082	[0.047-0.117] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 3 years old	5,069 Norwegian ancestry individuals	2,833 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	6E-8		0.087	[0.056-0.118] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 2 years old	4,631 Norwegian ancestry individuals	2,501 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	3E-8		0.093	[0.06-0.126] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1.5 years old	6,800 Norwegian ancestry individuals	3,780 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	8E-13		0.099	[0.072-0.126] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1 year old	6,970 Norwegian ancestry individuals	3,839 Norwegian ancestry individuals	2p23.3	ADCY3	rs13035244-C	0.43924	8E-13		0.098	[0.071-0.125] unit increase	Illumina [~ 8500000] (imputed)	N
776	chr2	25134008	25134009	rs13035244	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p23.3	ADCY3	rs13035244-T	0.5232	1E-8		0.1606	[0.11-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
776	chr2	25134010	25134011	rs56073414	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p23.3	ADCY3	rs56073414-A	0.1057	9E-13		0.4144	[0.3-0.53] mmHg decrease	Affymetrix [NR] (imputed)	N
776	chr2	25135437	25135438	rs2384060	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	2p23.3	ADCY3, DNAJC27	rs2384060-G	0.389048	9E-23		1.14	[1.11-1.17]	Illumina [~ 41266535] (imputed)	N
776	chr2	25136865	25136866	rs10203386	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs10203386-T	0.546748	5E-20		0.0193275	[0.015-0.023] unit decrease	NR [NR]	N
776	chr2	25136865	25136866	rs10203386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs10203386-?	NR	7E-67				Affymetrix [~ 8270000] (imputed)	N
776	chr2	25136865	25136866	rs10203386	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	2p23.3	ADCY3	rs10203386-?	NR	1E-11				NR [5554549] (imputed)	N
776	chr2	25136865	25136866	rs10203386	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	2p23.3	ADCY3	rs10203386-?	NR	8E-43				NR [5554549] (imputed)	N
776	chr2	25136865	25136866	rs10203386	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p23.3	NA	rs10203386-A	0.4506	1E-78		0.0318	[0.028-0.035] unit increase	NR [~ 27400000] (imputed)	N
776	chr2	25136865	25136866	rs10203386	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p23.3	NA	rs10203386-A	0.4506	1E-78		0.0318	[0.028-0.035] unit increase	NR [~ 27400000] (imputed)	N
776	chr2	25136865	25136866	rs10203386	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p23.3	ADCY3	rs10203386-A	0.452	2E-23		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
776	chr2	25136865	25136866	rs10203386	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2p23.3	ADCY3	rs10203386-A	0.45	2E-20		0.003	[0.0024-0.0036] unit decrease	Affymetrix [15275733] (imputed)	N
776	chr2	25136915	25136916	rs10203482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	ADCY3	rs10203482-C	NR	2E-10		0.0180581	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
776	chr2	25136915	25136916	rs10203482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p23.3		rs10203482-?	NR	1E-12				NR [~ 8900000] (imputed)	N
776	chr2	25136915	25136916	rs10203482	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	2p23.3	ADCY3	rs10203482-C	0.814	3E-7	(AA)	0.044	[0.026-0.062] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
776	chr2	25137322	25137323	rs10206196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p23.3	ADCY3	rs10206196-C	0.461	4E-9		0.02118418	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
776	chr2	25138039	25138040	rs6737082	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	2p23.3	ADCY3, NCOA1, PTRHD1, CENPO, DNAJC27, DNAJC27-AS1, EFR3B, POMC, DNMT3A, MIR1301, DTNB	rs6737082-C	0.47	5E-26				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25138039	25138040	rs6737082	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	2p23.3	ADCY3, NCOA1, PTRHD1, CENPO, DNAJC27, DNAJC27-AS1, EFR3B, POMC, DNMT3A, MIR1301, DTNB	rs6737082-C	0.47	5E-9		0.022	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25138039	25138040	rs6737082	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	2p23.3	ADCY3, NCOA1, PTRHD1, CENPO, DNAJC27, DNAJC27-AS1, EFR3B, POMC, DNMT3A, MIR1301, DTNB	rs6737082-C	0.47	6E-20		0.046	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25138039	25138040	rs6737082	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p23.3	ADCY3, NCOA1, PTRHD1, CENPO, DNAJC27, DNAJC27-AS1, EFR3B, POMC, DNMT3A, MIR1301, DTNB	rs6737082-C	0.47	3E-24				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25139595	25139596	rs55701159	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p23.3	ADCY3	rs55701159-T	0.89	7E-11		0.285	[0.21-0.36] unit increase	Affymetrix [~ 9800000] (imputed)	N
776	chr2	25141537	25141538	rs11676272	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	2p23.3	NR	rs11676272-?	NR	5E-14		12.279	NR z score decrease	Affymetrix, Illumina [10031233] (imputed)	N
776	chr2	25141537	25141538	rs11676272	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	2p23.3	ADCY3	rs11676272-G	0.46	2E-21		0.075	[0.059-0.091] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
776	chr2	25141537	25141538	rs11676272	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	2p23.3		rs11676272-?	NR	2E-9		0.043	[0.029-0.057] unit decrease	Affymetrix [9906178] (imputed)	N
776	chr2	25141537	25141538	rs11676272	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2p23.3	ADCY3	rs11676272-A	0.52	1E-8		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
776	chr2	25141537	25141538	rs11676272	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2p23.3	ADCY3	rs11676272-A	0.52	2E-7		0.029	[0.018-0.04] unit decrease	Affymetrix [at least 8900000] (imputed)	N
776	chr2	25141537	25141538	rs11676272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p23.3	NR	rs11676272-?	NR	7E-7		0.0345977	[0.021-0.048] unit increase	Illumina [32062178] (imputed)	N
776	chr2	25141537	25141538	rs11676272	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p23.3	ADCY3	rs11676272-A	0.5217	1E-8		0.00967895	[0.0064-0.013] unit increase	Affymetrix [11880941] (imputed)	N
776	chr2	25141537	25141538	rs11676272	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	2p23.3	ADCY3	rs11676272-A		1E-10		0.0058	unit decrease	Illumina [at least 200000]	N
776	chr2	25141537	25141538	rs11676272	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	2p23.3	ADCY3, CENPO	rs11676272-G	0.48560000000000003	4E-59		0.0294	[0.026-0.033] unit increase	Illumina [246328]	N
776	chr2	25141537	25141538	rs11676272	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	2p23.3	ADCY3	rs11676272-G	0.46	7E-23		0.068	[0.054-0.082] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
776	chr2	25141537	25141538	rs11676272	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	2p23.3	ADCY3	rs11676272-A	0.514	1E-11	(age 8)	0.011	[0.0071-0.0149] unit decrease	Illumina [~ 2200000] (imputed)	N
776	chr2	25141537	25141538	rs11676272	25953783	Warrington NM	2015-05-07	Int J Epidemiol	A genome-wide association study of body mass index across early life and childhood.	Body mass index	9,377 children and adolescents	3,918 European ancestry children and adolescents	2p23.3	ADCY3	rs11676272-A	0.514	1E-10	(age 1-17)			Illumina [~ 2200000] (imputed)	N
776	chr2	25141537	25141538	rs11676272	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p23.3	ADCY3	rs11676272-A	0.5457	4E-11	(EA)	0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
776	chr2	25141537	25141538	rs11676272	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p23.3	ADCY3	rs11676272-A	0.5457	2E-9	(EA,women)	0.0308	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
776	chr2	25141537	25141538	rs11676272	25044758	Stergiakouli E	2014-07-21	Obesity (Silver Spring)	Genome-wide association study of height-adjusted BMI in childhood identifies functional variant in ADCY3.	Height adjusted BMI	5,809 children	2,089 European ancestry children	2p23.3	ADCY3	rs11676272-G	0.48	4E-9		0.2	[0.13-0.27] unit increase	Illumina [2608006] (imputed)	N
776	chr2	25143172	25143173	rs533270135	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	ADCY3	rs533270135-G	NR	2E-9		0.0209108	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
776	chr2	25143407	25143408	rs112215462	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs112215462-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
776	chr2	25145172	25145173	rs59086897	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs59086897-?	NR	7E-7	(female)	0.17074	[0.1-0.24] unit increase	Affymetrix [7794483] (imputed)	N
776	chr2	25145172	25145173	rs59086897	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs59086897-?	NR	3E-15	(male)	0.20507	[0.15-0.26] unit increase	Affymetrix [7794483] (imputed)	N
776	chr2	25145172	25145173	rs59086897	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs59086897-?	NR	2E-19		0.18999	[0.15-0.23] unit increase	Affymetrix [7794483] (imputed)	N
776	chr2	25146688	25146689	rs10204266	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	2p23.3	ADCY3	rs10204266-T	NR	4E-6		22.49	[13.12-31.86] unit decrease	Illumina [4471676] (imputed)	N
776	chr2	25150010	25150011	rs6749422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p23.3		rs6749422-G	NR	2E-59		0.0308	[0.027-0.035] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
776	chr2	25150010	25150011	rs6749422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p23.3		rs6749422-G	0.423028	1E-12		0.0229913	[0.017-0.029] unit increase	Illumina [13479178] (imputed)	N
776	chr2	25150115	25150116	rs6752378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p23.3		rs6752378-A	0.49	1E-60				NR [NR] (imputed)	N
776	chr2	25150115	25150116	rs6752378	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p23.3		rs6752378-A	0.49	7E-55		0.023	% increase	NR [NR] (imputed)	N
776	chr2	25150115	25150116	rs6752378	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p23.3	ADCY3	rs6752378-C	0.513963	2E-48		0.020021	[0.017-0.023] unit decrease	Affymetrix [12370749]	N
776	chr2	25150115	25150116	rs6752378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.3		rs6752378-?	NR	2E-70				NR [~ 8900000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4679	4E-6	(EA, women)	0.0479	[0.028-0.068] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.481	9E-12	(women)	0.035	[0.025-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4751	3E-14		0.0309	[0.023-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4641	5E-12	(EA,women)	0.0374	[0.027-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4628	4E-15	(EA)	0.0332	[0.025-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-?	NR	9E-16	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-?	NR	3E-17				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-?	NR	2E-18	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-?	NR	2E-14	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4751	9E-15	(women)	0.036	[0.027-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4751	3E-16		0.0301	[0.023-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4628	9E-16	(EA, women)	0.0393	[0.03-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150115	25150116	rs6752378	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	ADCY3	rs6752378-A	0.4628	7E-18	(EA)	0.0331	[0.026-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p23.3	NR	rs10182181-?	NR	7E-7		0.03445871	[0.021-0.048] unit increase	Illumina [32062178] (imputed)	N
776	chr2	25150295	25150296	rs10182181	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p23.3	NR	rs10182181-A	NR	3E-35		0.031	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p23.3	ADCY3, DNAJC27	rs10182181-G	0.46	3E-32		0.028	[0.024-0.032] unit increase	Illumina [6108953] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	7E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	4E-12	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	1E-18				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	7E-7	(men)	0.0271	[0.016-0.038] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	3E-16		0.0325	[0.025-0.04] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	2E-11	(women)	0.036	[0.025-0.047] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	7E-19		0.0301	[0.023-0.037] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	5E-8	(men)	0.026	[0.017-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	ADCY3	rs10182181-A	0.5182	2E-12	(women)	0.0329	[0.024-0.042] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	2p23.3	ADCY3	rs10182181-G	NR	6E-16	(additive model)	0.033	[0.025-0.041] unit increase	NR [9288881] (imputed)	N
776	chr2	25150295	25150296	rs10182181	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	2p23.3	NR	rs10182181-G	NR	2E-21				Affymetrix, Illumina [2499691] (imputed)	N
776	chr2	25150295	25150296	rs10182181	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p23.3	NR	rs10182181-A	0.538102907902883	2E-30		0.031007377	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	ADCY3	rs10182181-G	0.468	8E-26		0.031	[0.025-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr2	25150295	25150296	rs10182181	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	ADCY3	rs10182181-G	0.463	6E-9	(EA, men)	0.023	[0.016-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr2	25150295	25150296	rs10182181	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	ADCY3	rs10182181-G	0.462	9E-24	(EA)	0.031	[0.025-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr2	25150295	25150296	rs10182181	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	ADCY3	rs10182181-G	0.46	4E-21	(EA, women)	0.037	[0.029-0.044] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr2	25150295	25150296	rs10182181	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p23.3	ADCY3, POMC	rs10182181-G	0.46	3E-14	(Overweight)	1.05	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
776	chr2	25150295	25150296	rs10182181	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p23.3	ADCY3, POMC	rs10182181-G	0.46	1E-17	(Obesity class I)	1.08	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
776	chr2	25150435	25150436	rs13313741	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs13313741-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
776	chr2	25150640	25150641	rs10182458	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p23.3	ADCY3	rs10182458-A	0.513877	4E-145		0.0359119	[0.033-0.039] unit decrease	Affymetrix [12370749]	N
776	chr2	25150640	25150641	rs10182458	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p23.3	NR	rs10182458-G	0.4866	6E-26		0.02614085	[0.021-0.031] unit increase	Affymetrix [10549349] (imputed)	N
776	chr2	25150757	25150758	rs10185143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p23.3		rs10185143-C	NR	2E-79		0.0241	[0.022-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
776	chr2	25150757	25150758	rs10185143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p23.3		rs10185143-C	0.498501	9E-21		0.0187652	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
776	chr2	25150757	25150758	rs10185143	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.3	ADCY3, DNAJC27	rs10185143-?	NR	2E-27		0.030839747	[0.025-0.036] unit decrease	Illumina [27896057] (imputed)	N
776	chr2	25152799	25152800	rs7569646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p23.3		rs7569646-?	NR	3E-8				NR [~ 8900000] (imputed)	N
776	chr2	25153985	25153986	rs6726261	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	ADCY3	rs6726261-C	NR	4E-14		0.02229	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
776	chr2	25156772	25156773	rs2384054	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p23.3	NR	rs2384054-C	0.477	4E-8		0.00590798	[0.0038-0.008] unit increase	NR [9732723] (imputed)	N
776	chr2	25158007	25158008	rs713586	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p23.3	NR	rs713586-?	NR	2E-7		0.03664159	[0.023-0.05] unit increase	Illumina [32062178] (imputed)	N
776	chr2	25158007	25158008	rs713586	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p23.3	ADCY3, DNAJC27	rs713586-C	0.511	5E-13	(Japanese)	0.025	[0.019-0.031] unit increase	Illumina [6108953] (imputed)	N
776	chr2	25158007	25158008	rs713586	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p23.3	ADCY3, RBJ, POMC	rs713586-C	0.47	6E-22		0.14	[0.10-0.18] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
776	chr2	25158280	25158281	rs713587	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	2p23.3	NR	rs713587-?	NR	1E-7		0.03703934	[0.023-0.051] unit increase	Illumina [32062178] (imputed)	N
776	chr2	25158280	25158281	rs713587	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	2p23.3	intergenic	rs713587-T	0.49	4E-6	(Children)			Illumina [up to 527642]	N
776	chr2	25159500	25159501	rs6738433	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	2p23.3	ADCY3, DNAJC27	rs6738433-C	0.439245	3E-17		1.19	[1.14-1.24]	Illumina [41266535] (imputed)	N
776	chr2	25161385	25161386	rs4430895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	NR	rs4430895-T	0.479404	2E-11		0.015075303	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr2	25169199	25169200	rs1172294	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	2p23.3	ADCY3, DNAJC27, POMC	rs1172294-G	0.45	1E-8	(Pubertal growth)	0.08	[0.053-0.107] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
777	chr2	25169311	25169312	rs74654316	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2p23.3	DNAJC27	rs74654316-A	0.088	1E-15		0.33	[0.25-0.41] unit decrease	Affymetrix [339439]	N
777	chr2	25176276	25176277	rs754537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNAJC27	rs754537-T	NR	7E-13		0.0201077	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
777	chr2	25176276	25176277	rs754537	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p23.3	ADCY3, CENPO, EFR3B, LOC391356, NCOA1, RBJ	rs754537-T	0.486736	9E-10	(females)	0.02357	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
777	chr2	25176276	25176277	rs754537	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p23.3	ADCY3, CENPO, EFR3B, LOC391356, NCOA1, RBJ	rs754537-T	0.486736	7E-6		0.01294	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
777	chr2	25176276	25176277	rs754537	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p23.3	ADCY3, CENPO, EFR3B, LOC391356, NCOA1, RBJ	rs754537-T	0.486736	5E-22		0.02381	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
777	chr2	25176276	25176277	rs754537	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p23.3	ADCY3, CENPO, EFR3B, LOC391356, NCOA1, RBJ	rs754537-T	0.486736	2E-39	(females)	0.04375	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
777	chr2	25176276	25176277	rs754537	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p23.3	ADCY3, CENPO, EFR3B, LOC391356, NCOA1, RBJ	rs754537-T	0.4867	2E-21	(males)	4.25E-4	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
777	chr2	25182487	25182488	rs28445639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p23.3		rs28445639-T	NR	3E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
777	chr2	25182487	25182488	rs28445639	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p23.3	NR	rs28445639-T	0.2118	1E-20		0.0223	[0.018-0.027] unit increase	NR [~ 27400000] (imputed)	N
777	chr2	25187598	25187599	rs4665736	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p23.3	NR	rs4665736-?	NR	6E-8		0.03437974	[0.022-0.047] unit increase	Illumina [34656550] (imputed)	N
777	chr2	25187598	25187599	rs4665736	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p23.3	RBJ	rs4665736-T	0.55	1E-8		0.037	[0.023-0.051] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
777	chr2	25187598	25187599	rs4665736	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p23.3	DNAJC27	rs4665736-T	0.54	7E-16		0.029	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
777	chr2	25187943	25187944	rs62140616	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs62140616-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25191744	25191745	rs2118826	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	DNAJC27	rs2118826-A	0.4899	1E-39		0.0247	[0.021-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
777	chr2	25192907	25192908	rs56784950	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs56784950-?	NR	5E-21				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25193426	25193427	rs114055620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs114055620-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25193468	25193469	rs1470039	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.3	NR	rs1470039-?	NR	4E-6		0.0080758	[0.0046-0.0115] unit increase	Affymetrix [805426] (imputed)	N
777	chr2	25193997	25193998	rs6749646	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p23.3	NA	rs6749646-A	0.7801	6E-22		0.021	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
777	chr2	25200870	25200871	rs80078501	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs80078501-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25211601	25211602	rs7584592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs7584592-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25218047	25218048	rs57385162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p23.3		rs57385162-T	NR	4E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
777	chr2	25238129	25238130	rs147253843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs147253843-?	NR	6E-13				NR [~ 8900000] (imputed)	N
777	chr2	25241385	25241386	rs188315257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p23.3		rs188315257-?	NR	3E-9				NR [~ 8900000] (imputed)	N
777	chr2	25259952	25259953	rs2196792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs2196792-A	NR	3E-10		0.020789	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
777	chr2	25259952	25259953	rs2196792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs2196792-A	NR	4E-12		0.0229113	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
777	chr2	25259952	25259953	rs2196792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs2196792-A	NR	9E-21		0.0311376	[0.025-0.038] unit decrease	Affymetrix [321114] (imputed)	N
777	chr2	25259952	25259953	rs2196792	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs2196792-A	NR	2E-10		0.0214154	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
777	chr2	25259952	25259953	rs2196792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p23.3		rs2196792-?	NR	2E-19				NR [~ 8900000] (imputed)	N
777	chr2	25259952	25259953	rs2196792	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	DNAJC27-AS1	rs2196792-A	0.2265	1E-8		0.0432	[0.028-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p23.3		rs116734066-T	NR	1E-10		0.0252	[0.018-0.033] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p23.3		rs116734066-T	NR	2E-9		0.0239	[0.016-0.032] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs116734066-T	NR	1E-13		0.0360824	[0.027-0.046] unit decrease	Affymetrix [319769] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs116734066-T	NR	3E-15		0.0384675	[0.029-0.048] unit decrease	Affymetrix [319769] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs116734066-T	NR	2E-22		0.0477219	[0.038-0.057] unit decrease	Affymetrix [321114] (imputed)	N
777	chr2	25262927	25262928	rs116734066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNAJC27-AS1	rs116734066-T	NR	3E-12		0.0343852	[0.025-0.044] unit decrease	Affymetrix [321169] (imputed)	N
777	chr2	25262927	25262928	rs116734066	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs116734066-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25276283	25276284	rs6733301	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2p23.3	DTNB, ADCY3, RBJ, POMC, DNMT3A	rs6733301-G	0.87	8E-7		7.5	[4.56-10.44] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
777	chr2	25288186	25288187	rs12470059	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs12470059-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
777	chr2	25291538	25291539	rs1971136	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p23.3	NR	rs1971136-T	0.5264	5E-9	(EA)	0.0381	[0.025-0.051] unit increase	Illumina [~ 11800000] (imputed)	N
778	chr2	25301754	25301755	rs478222	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	2p23.3	EFR3B, 3NCOA1, C2orf79, CENPO, ADCY3, DNAJC27, POMC, DNMT3A	rs478222-?	0.59	4E-9		1.22	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
778	chr2	25305755	25305756	rs1530016	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	2p23.3	EFR3B	rs1530016-T	0.40	3E-6	(Children)			Illumina [up to 527642]	N
778	chr2	25317652	25317653	rs2438679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs2438679-T	NR	5E-9		0.016768	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
778	chr2	25333204	25333205	rs67616642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs67616642-G	NR	4E-15		0.0263061	[0.02-0.033] unit decrease	Affymetrix [321114] (imputed)	N
778	chr2	25333204	25333205	rs67616642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs67616642-G	NR	1E-8		0.019144	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
778	chr2	25333734	25333735	rs519111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	EFR3B	rs519111-T	0.5805	1E-13		0.0479	[0.035-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
778	chr2	25337154	25337155	rs56180058	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p23.3	EFR3B	rs56180058-C		3E-6		0.0057	[0.0033-0.0081] unit increase	Affymetrix [13304133] (imputed)	N
778	chr2	25340609	25340610	rs11684464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	EFR3B	rs11684464-G	NR	2E-8		0.0161493	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
778	chr2	25348545	25348546	rs11693908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	EFR3B	rs11693908-A	NR	2E-10		0.0276096	[0.019-0.036] unit decrease	Affymetrix [319769] (imputed)	N
778	chr2	25348545	25348546	rs11693908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs11693908-A	NR	6E-12		0.0298642	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
778	chr2	25348545	25348546	rs11693908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs11693908-A	NR	6E-18		0.0378261	[0.029-0.046] unit decrease	Affymetrix [321114] (imputed)	N
778	chr2	25348545	25348546	rs11693908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs11693908-A	NR	2E-10		0.0278055	[0.019-0.036] unit decrease	Affymetrix [321169] (imputed)	N
778	chr2	25348545	25348546	rs11693908	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs11693908-?	NR	6E-24				Affymetrix [~ 8270000] (imputed)	N
778	chr2	25348591	25348592	rs34517663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs34517663-?	NR	6E-15				NR [~ 8900000] (imputed)	N
778	chr2	25352199	25352200	rs183823891	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p23.3	NR	rs183823891-T	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
778	chr2	25357069	25357070	rs2164809	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	EFR3B	rs2164809-T	0.1364	3E-6		0.047	[0.027-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
778	chr2	25359253	25359254	rs10202934	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p23.3	EFR3B	rs10202934-T	NR	4E-9		0.0215859	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
778	chr2	25369001	25369002	rs1561288	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	2p23.3	POMC	rs1561288-T	0.22	5E-8		0.055	[0.035-0.075] unit decrease	Affymetrix, Illumina [557887] (imputed)	N
778	chr2	25369368	25369369	rs13032289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	EFR3B	rs13032289-G	NR	4E-8		0.0164644	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
778	chr2	25369368	25369369	rs13032289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs13032289-G	NR	7E-10		0.018488	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
778	chr2	25370615	25370616	rs35720317	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	EFR3B	rs35720317-A	NR	3E-8		0.0357334	[0.023-0.048] unit decrease	Affymetrix [321016] (imputed)	N
778	chr2	25373030	25373031	rs13401333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs13401333-?	NR	6E-20				Affymetrix [~ 8270000] (imputed)	N
778	chr2	25373030	25373031	rs13401333	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs13401333-?	NR	7E-38				Affymetrix [~ 8270000] (imputed)	N
778	chr2	25373297	25373298	rs13428823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs13428823-G	NR	2E-12		0.0209189	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
778	chr2	25373297	25373298	rs13428823	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p23.3	POMC	rs13428823-G	0.37	6E-12		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
778	chr2	25374361	25374362	rs60925903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs60925903-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
778	chr2	25377175	25377176	rs2164808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs2164808-T	NR	4E-12		0.0197589	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
778	chr2	25377175	25377176	rs2164808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	EFR3B	rs2164808-T	NR	4E-8		0.0156993	[0.01-0.021] unit decrease	Affymetrix [321169] (imputed)	N
778	chr2	25378371	25378372	rs7589318	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p23.3	NR	rs7589318-G	0.68	2E-19		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
778	chr2	25378371	25378372	rs7589318	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p23.3	NR	rs7589318-G	0.68	5E-8				Affymetrix [2446094] (imputed)	N
778	chr2	25380572	25380573	rs1866146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p23.3	RP11-509E16.1	rs1866146-G	NR	3E-9		0.0195118	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
778	chr2	25380572	25380573	rs1866146	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	RP11-509E16.1	rs1866146-G	NR	9E-15		0.0233187	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
778	chr2	25385484	25385485	rs6545975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs6545975-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
778	chr2	25387180	25387181	rs12473543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	POMC	rs12473543-G	NR	2E-12		0.0249525	[0.018-0.032] unit increase	Affymetrix [321016] (imputed)	N
778	chr2	25389223	25389224	rs934778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p23.3		rs934778-G	NR	1E-16		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
778	chr2	25393387	25393388	rs76645364	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p23.3	POMC	rs76645364-?	0.8164	1E-10		1.1049724	NR	Affymetrix [9154080] (imputed)	N
778	chr2	25393811	25393811	rs201258916	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	POMC	rs201258916-T	0.8372	1E-6		0.0471	[0.028-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
778	chr2	25398841	25398842	rs2028196	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2p23.3	intergenic	rs2028196-?	NR	9E-7		0.013	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
778	chr2	25404974	25404975	rs4665773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p23.3		rs4665773-?	NR	3E-21				NR [~ 8900000] (imputed)	N
779	chr2	25445285	25445286	rs113953597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p23.3	RP11-458N5.1	rs113953597-A	NR	2E-11		0.0255957	[0.018-0.033] unit increase	Affymetrix [321114] (imputed)	N
779	chr2	25445285	25445286	rs113953597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	RP11-458N5.1	rs113953597-A	NR	3E-18		0.030304	[0.023-0.037] unit increase	Affymetrix [321016] (imputed)	N
779	chr2	25445285	25445286	rs113953597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p23.3	RP11-458N5.1	rs113953597-A	NR	2E-9		0.0227288	[0.015-0.03] unit increase	Affymetrix [323123] (imputed)	N
779	chr2	25445285	25445286	rs113953597	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p23.3	NR	rs113953597-A	0.2188	1E-8	(EA)	0.0446	[0.029-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
779	chr2	25446472	25446473	rs146910503	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p23.3	DNMT3A	rs146910503-G	0.978757	3E-11		0.0334167	[0.024-0.043] unit increase	Affymetrix [12370749]	N
779	chr2	25447499	25447500	rs79761284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	RP11-458N5.1	rs79761284-A	NR	8E-9		0.037356	[0.025-0.05] unit decrease	Affymetrix [319769] (imputed)	N
779	chr2	25447499	25447500	rs79761284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	RP11-458N5.1	rs79761284-A	NR	1E-9		0.0393355	[0.027-0.052] unit decrease	Affymetrix [319769] (imputed)	N
779	chr2	25447499	25447500	rs79761284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	RP11-458N5.1	rs79761284-A	NR	6E-13		0.0470074	[0.034-0.06] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25455388	25455389	rs752208	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs752208-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25457707	25457708	rs11695471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p23.3	DNMT3A	rs11695471-A	NR	2E-9		0.0199253	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
779	chr2	25457707	25457708	rs11695471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11695471-A	NR	1E-29		0.0340539	[0.028-0.04] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25457707	25457708	rs11695471	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p23.3	DNMT3A	rs11695471-A	NR	3E-15		0.0258774	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25458066	25458067	rs34145995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p23.3	NR	rs34145995-C	0.584297	9E-12		0.013486	[0.0096-0.0174] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
779	chr2	25458099	25458100	rs11689727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11689727-A	NR	1E-19		0.026945	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
779	chr2	25458099	25458100	rs11689727	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	DNMT3A	rs11689727-A	0.3317	2E-9		0.0117	[0.008-0.0154] unit decrease	Affymetrix [18391927] (imputed)	N
779	chr2	25458378	25458379	rs10084238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs10084238-G	NR	2E-9		0.0172414	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
779	chr2	25458378	25458379	rs10084238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs10084238-G	NR	4E-10		0.0178232	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
779	chr2	25458378	25458379	rs10084238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs10084238-G	NR	6E-12		0.0197717	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
779	chr2	25458378	25458379	rs10084238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs10084238-G	NR	4E-10		0.0180252	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
779	chr2	25458852	25458853	rs79478703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs79478703-G	NR	3E-9		0.0335677	[0.022-0.045] unit increase	Affymetrix [321016] (imputed)	N
779	chr2	25458852	25458853	rs79478703	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	DNMT3A	rs79478703-A	0.932	4E-7		0.067	[0.041-0.093] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
779	chr2	25463482	25463483	rs2289195	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p23.3	DNMT3A	rs2289195-A	0.43	2E-37		0.038	[0.032-0.044] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
779	chr2	25465719	25465720	rs13002567	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p23.3	DNMT3A	rs13002567-T	0.666667	3E-24		0.0197448	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
779	chr2	25465719	25465720	rs13002567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p23.3		rs13002567-?	NR	9E-24				NR [~ 8900000] (imputed)	N
779	chr2	25465719	25465720	rs13002567	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.3		rs13002567-?	NR	2E-19		0.0193969	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
779	chr2	25472065	25472066	rs2384145	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p23.3	DNMT3A	rs2384145-C	NR	6E-9		0.0180142	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
779	chr2	25473310	25473311	rs13427672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs13427672-?	NR	5E-113				NR [~ 8900000] (imputed)	N
779	chr2	25473310	25473311	rs13427672	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	DNMT3A	rs13427672-A	0.4193	5E-16		0.0523	[0.04-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
779	chr2	25473546	25473547	rs747792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	DNMT3A	rs747792-T	0.691532	4E-10		0.01537782	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
779	chr2	25473546	25473547	rs747792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	DNMT3A	rs747792-T	0.69153	1E-10		0.015846897	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
779	chr2	25481897	25481898	rs1369703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p23.3	DNMT3A	rs1369703-C	NR	2E-18		0.0274844	[0.021-0.034] unit increase	Affymetrix [321114] (imputed)	N
779	chr2	25481897	25481898	rs1369703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs1369703-C	NR	4E-20		0.0261987	[0.021-0.032] unit increase	Affymetrix [321016] (imputed)	N
779	chr2	25482969	25482970	rs11694842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11694842-G	NR	2E-16		0.0246235	[0.019-0.031] unit decrease	Affymetrix [321169] (imputed)	N
779	chr2	25482969	25482970	rs11694842	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.3	DNMT3A	rs11694842-?	NR	8E-14		0.03420149	[0.025-0.043] unit decrease	Illumina [27896057] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs11694842-A	0.6728	9E-8	(men)	0.036	[0.023-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs11694842-A	0.6728	2E-11		0.0296	[0.021-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	DNMT3A	rs11694842-A	0.6728	2E-9		0.0307	[0.021-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	DNMT3A	rs11694842-A	0.672	1E-6	(men)	0.037	[0.022-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs11694842-?	0.6728	2E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs11694842-?	0.6728	2E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25482969	25482970	rs11694842	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p23.3	DNMT3A	rs11694842-A	0.92	4E-11		0.062	[0.042-0.082] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
779	chr2	25483846	25483847	rs137926936	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs137926936-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25483957	25483958	rs10167567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs10167567-G	NR	5E-13		0.0209313	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
779	chr2	25485151	25485152	rs58552784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs58552784-G	NR	5E-11		0.0215919	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
779	chr2	25486769	25486770	rs12991495	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs12991495-?	NR	3E-34				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p23.3	NR	rs12991495-T	0.6906	5E-13		0.0135	[0.0098-0.0172] unit increase	NR [~ 27400000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs12991495-T	0.692	9E-6	(EA, women)	0.0251	[0.014-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs12991495-T	0.692	3E-6	(EA, men)	0.0297	[0.017-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs12991495-T	0.692	2E-10	(EA)	0.0272	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6943	6E-6	(EA, men)	0.0318	[0.018-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p23.3	DNMT3A	rs12991495-T	0.692	3E-9	(EA)	0.0293	[0.02-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs12991495-?	0.692	2E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p23.3	DNMT3A	rs12991495-?	0.692	2E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	4E-6		0.039	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	2E-7	(men)	0.0609	[0.038-0.084] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	7E-8		0.0245	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	2E-10	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	1E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	3E-10		0.0253	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p23.3	DNMT3A	rs12991495-T	0.6973	2E-8	(men)	0.0319	[0.021-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
779	chr2	25486769	25486770	rs12991495	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p23.3	DNMT3A	rs12991495-T	0.6901	6E-14	(EA)	0.0281	[0.021-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
779	chr2	25486769	25486770	rs12991495	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p23.3	DNMT3A	rs12991495-T	0.6901	2E-9	(EA, men)	0.0318	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
779	chr2	25486769	25486770	rs12991495	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p23.3	DNMT3A	rs12991495-T	0.6901	2E-7	(EA,women)	0.0259	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
779	chr2	25487376	25487377	rs11890065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs11890065-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25487460	25487461	rs11890077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11890077-G	NR	6E-9		0.0208132	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
779	chr2	25487460	25487461	rs11890077	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs11890077-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25488818	25488819	rs7578575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p23.3	DNMT3A	rs7578575-A	0.293307	1E-25		0.025683062	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr2	25488818	25488819	rs7578575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.3	DNMT3A	rs7578575-A	0.293328	2E-37		0.031412944	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
779	chr2	25488818	25488819	rs7578575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p23.3	DNMT3A	rs7578575-A	0.29333	1E-46		0.03521419	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
779	chr2	25488818	25488819	rs7578575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.3		rs7578575-?	NR	9E-15				NR [~ 8900000] (imputed)	N
779	chr2	25488818	25488819	rs7578575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2p23.3	DNMT3A	rs7578575-A	0.2942	4E-17		0.03323868	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr2	25488818	25488819	rs7578575	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2p23.3	DNMT3A	rs7578575-A	0.2942	9E-24		0.04004925	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
779	chr2	25489131	25489132	rs11683424	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2p23.3		rs11683424-C	0.821	1E-11				Affymetrix [10369434] (imputed)	N
779	chr2	25489348	25489349	rs11690500	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2p23.3		rs11690500-T	0.821	3E-15				Affymetrix [10369434] (imputed)	N
779	chr2	25492466	25492467	rs13428812	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2p23.3		rs13428812-A	0.69	5E-22				Affymetrix [10369434] (imputed)	N
779	chr2	25492466	25492467	rs13428812	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p23.3	DNMT3A	rs13428812-G	NR	1E-7		1.0542963	NR	Affymetrix, Illumina [8278136] (imputed)	N
779	chr2	25492466	25492467	rs13428812	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2p23.3	DNMT3A	rs13428812-G	0.326	9E-10		1.06	[1.03-1.10]	Affymetrix, Illumina [953241] (imputed)	N
779	chr2	25499570	25499571	rs79906221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs79906221-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25499570	25499571	rs79906221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs79906221-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25500904	25500905	rs201014116	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p23.3	DNMT3A	rs201014116-?	NR	2E-7	(subset analysis)			Illumina [130052]	N
779	chr2	25502551	25502552	rs2006788	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2p23.3	DNMT3A	rs2006788-G	0.3077	8E-10		0.02384621	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
779	chr2	25502891	25502892	rs79333016	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs79333016-G	NR	2E-9		0.0478095	[0.032-0.063] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25502891	25502892	rs79333016	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs79333016-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25503785	25503786	rs56197924	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2p23.3		rs56197924-G	0.692	1E-26				Affymetrix [10369434] (imputed)	N
779	chr2	25505792	25505793	rs72810068	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2p23.3		rs72810068-T	0.69	3E-19				Affymetrix [10369434] (imputed)	N
779	chr2	25505792	25505793	rs72810068	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2p23.3		rs72810068-T	0.69	6E-19				Affymetrix [10369434] (imputed)	N
779	chr2	25508812	25508812	rs34636567	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p23.3	NR	rs34636567-TA	0.5224	3E-10		0.001481	[0.001-0.0019] unit decrease	Affymetrix [NR] (imputed)	N
779	chr2	25510275	25510276	rs11677670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11677670-T	NR	1E-8		0.0205549	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
779	chr2	25510275	25510276	rs11677670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11677670-T	NR	4E-14		0.0276492	[0.02-0.035] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25510275	25510276	rs11677670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs11677670-T	NR	2E-10		0.0234743	[0.016-0.031] unit decrease	Affymetrix [321169] (imputed)	N
779	chr2	25512437	25512438	rs12999687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs12999687-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25513651	25513652	rs6739187	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p23.3	DNMT3A	rs6739187-A	0.4458	4E-6		0.0321	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
779	chr2	25514332	25514333	rs34655300	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	2p23.3		rs34655300-T	NR	5E-10		0.136669	[0.094-0.18] unit increase	NR [5054572] (imputed)	N
779	chr2	25514332	25514333	rs34655300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p23.3		rs34655300-?	NR	3E-8				NR [~ 8900000] (imputed)	N
779	chr2	25524943	25524944	rs7581217	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs7581217-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25526631	25526632	rs34635462	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs34635462-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
779	chr2	25531349	25531350	rs6711622	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2p23.3		rs6711622-A	NR	4E-8		0.111466	[0.072-0.151] unit increase	NR [2787054] (imputed)	N
779	chr2	25531349	25531350	rs6711622	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs6711622-A	NR	3E-8		0.0161258	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25531778	25531779	rs6546070	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	2p23.3		rs6546070-A	NR	3E-8		0.0303	[0.02-0.041] unit increase	Affymetrix [6193476] (imputed)	N
779	chr2	25539356	25539357	rs6722613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p23.3		rs6722613-A	NR	7E-14		0.0169	[0.012-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
779	chr2	25539356	25539357	rs6722613	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	2p23.3	NR	rs6722613-?	NR	5E-6		1.24	[1.13-1.36]	Illumina [5163786] (imputed)	N
779	chr2	25543634	25543635	rs72810089	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p23.3	NR	rs72810089-A	0.968911	2E-9		0.0142819	[0.0095-0.019] unit increase	Affymetrix [16582909] (imputed)	N
779	chr2	25543634	25543635	rs72810089	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p23.3	NR	rs72810089-A	0.968911	5E-6		0.0125232	[0.0072-0.0178] unit increase	Affymetrix [16582965] (imputed)	N
779	chr2	25551129	25551130	rs17745484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs17745484-T	NR	8E-9		0.0173204	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
779	chr2	25551129	25551130	rs17745484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs17745484-T	NR	4E-13		0.0219628	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
779	chr2	25551129	25551130	rs17745484	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs17745484-T	NR	6E-9		0.0176438	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
780	chr2	25565906	25565907	rs1550117	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	2p23.3	AC012074.2	rs1550117-A	0.06968	1E-8				Affymetrix, Illumina [NR] (imputed)	N
780	chr2	25568714	25568715	rs11674660	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	931 European ancestry cases, 228 African American ancestry cases, 14,210 European ancestry controls, 2,480 African American ancestry controls	NA	2p23.3	DNMT3A, DTNB	rs11674660-?	NR	5E-8		1.54	[1.31-1.79]	Affymetrix, Illumina [NR] (imputed)	N
780	chr2	25568714	25568715	rs11674660	31545351	Irvin MR	2019-09-23	Am J Hypertens	Genome wide association study of apparent treatment resistant hypertension in the CHARGE consortium: The CHARGE Pharmacogenetics Working Group.	Resistant hypertension	931 European ancestry cases, 14,210 European ancestry controls	NA	2p23.3	DNMT3A, DTNB	rs11674660-T	0.15	8E-8		1.53	[1.31-1.80]	Affymetrix, Illumina [NR] (imputed)	N
780	chr2	25569436	25569437	rs59611499	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs59611499-C	0.360802	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
780	chr2	25575522	25575523	rs77541036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs77541036-G	NR	2E-8		0.0407047	[0.026-0.055] unit increase	Affymetrix [319769] (imputed)	N
780	chr2	25575522	25575523	rs77541036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs77541036-G	NR	9E-9		0.0417195	[0.028-0.056] unit increase	Affymetrix [319769] (imputed)	N
780	chr2	25575522	25575523	rs77541036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p23.3	DNMT3A	rs77541036-G	NR	3E-9		0.0449953	[0.03-0.06] unit decrease	Affymetrix [321788] (imputed)	N
780	chr2	25575522	25575523	rs77541036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p23.3		rs77541036-G	0.038427	3E-11		0.037995823	[0.027-0.049] unit increase	Affymetrix [93095623] (imputed)	N
780	chr2	25575522	25575523	rs77541036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p23.3	NR	rs77541036-G	0.037266	2E-13		0.03602	[0.026-0.046] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
780	chr2	25578587	25578588	rs73920681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p23.3		rs73920681-G	0.0823930000000001	3E-13		0.029428555	[0.022-0.037] unit increase	Affymetrix [93095623] (imputed)	N
780	chr2	25578587	25578588	rs73920681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p23.3		rs73920681-G	0.082384	2E-14		0.030662261	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
780	chr2	25583384	25583385	rs74688707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs74688707-T	0.0717357	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
780	chr2	25583384	25583385	rs74688707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p23.3	NR	rs74688707-T	0.083447	5E-15		0.027434	[0.021-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
780	chr2	25584035	25584036	rs74918997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs74918997-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
780	chr2	25584035	25584036	rs74918997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.3		rs74918997-?	NR	9E-13				NR [~ 8900000] (imputed)	N
780	chr2	25584161	25584162	rs71439172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs71439172-A	NR	8E-14		0.0301728	[0.022-0.038] unit decrease	Affymetrix [319769] (imputed)	N
780	chr2	25584161	25584162	rs71439172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs71439172-A	NR	4E-15		0.0317554	[0.024-0.04] unit decrease	Affymetrix [319769] (imputed)	N
780	chr2	25584161	25584162	rs71439172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs71439172-A	NR	7E-18		0.0350671	[0.027-0.043] unit decrease	Affymetrix [321114] (imputed)	N
780	chr2	25584161	25584162	rs71439172	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs71439172-A	NR	5E-14		0.0307242	[0.023-0.039] unit decrease	Affymetrix [321169] (imputed)	N
780	chr2	25584161	25584162	rs71439172	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs71439172-?	NR	7E-17				Affymetrix [~ 8270000] (imputed)	N
780	chr2	25584161	25584162	rs71439172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p23.3		rs71439172-?	NR	5E-18				NR [~ 8900000] (imputed)	N
780	chr2	25584161	25584162	rs71439172	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p23.3	NR	rs71439172-A	0.1437	3E-16		0.0233	[0.018-0.029] unit decrease	NR [~ 27400000] (imputed)	N
780	chr2	25586593	25586594	rs73920689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs73920689-G	NR	2E-9		0.0303881	[0.02-0.04] unit increase	Affymetrix [319769] (imputed)	N
780	chr2	25586593	25586594	rs73920689	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs73920689-G	NR	2E-9		0.0305041	[0.021-0.04] unit increase	Affymetrix [319769] (imputed)	N
780	chr2	25587850	25587851	rs6705138	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p23.3	NR	rs6705138-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
780	chr2	25592917	25592918	rs11903847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs11903847-T	0.334924	2E-8		0.0238315	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
780	chr2	25592917	25592918	rs11903847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs11903847-T	0.334924	3E-8		0.0236032	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
780	chr2	25592917	25592918	rs11903847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs11903847-T	0.334924	3E-8		0.0235982	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
780	chr2	25592917	25592918	rs11903847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs11903847-T	0.334924	4E-8		0.0234368	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
780	chr2	25592917	25592918	rs11903847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs11903847-T	0.334924	7E-9		0.024006	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
780	chr2	25592917	25592918	rs11903847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p23.3		rs11903847-C	NR	1E-11		0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
780	chr2	25592917	25592918	rs11903847	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.3	DTNB	rs11903847-T	0.336582	3E-10		0.0134102	[0.0092-0.0176] unit increase	Affymetrix [NR] (imputed)	N
780	chr2	25593536	25593537	rs12988231	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p23.3	AC012074.2	rs12988231-C	0.315375	4E-10		0.015076092	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr2	25593536	25593537	rs12988231	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs12988231-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
780	chr2	25596321	25596322	rs7586928	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2p23.3	DNMT3A, DTNB	rs7586928-?	NR	3E-10		0.462	[0.32-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
780	chr2	25596508	25596509	rs732076	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	2p23.3		rs732076-?	NR	7E-6		1.133	[1.08-1.19]	NR [674885]	N
780	chr2	25598417	25598418	rs744976	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	AC012074.2	rs744976-C	NR	8E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
780	chr2	25598422	25598423	rs77639126	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	2p23.3	DTNB	rs77639126-?		2E-6	(French Canadians)	3.169321		Illumina [7614484] (imputed)	N
780	chr2	25599171	25599172	rs141216273	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p23.3	NR	rs141216273-A	NR	5E-6		1.14	[NR]	Illumina [7158791] (imputed)	N
780	chr2	25605571	25605572	rs148746268	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	2p23.3		rs148746268-G	0.022	3E-6		3.8		Illumina [5411261] (imputed)	N
780	chr2	25610286	25610287	rs66917623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs66917623-?	NR	6E-16				NR [~ 8900000] (imputed)	N
780	chr2	25613145	25613146	rs7577599	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	2p23.3	NR	rs7577599-T		1E-16		1.24	[1.18-1.30]	Illumina [at least 7182761] (imputed)	N
780	chr2	25613145	25613146	rs7577599	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2p23.3	NR	rs7577599-A	0.81	6E-6	(Any IgH translocation vs. controls)	1.43	[1.22-1.67]	Illumina [414804] (imputed)	N
780	chr2	25628201	25628202	rs183677610	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.3	NR	rs183677610-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
780	chr2	25628201	25628202	rs183677610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.3		rs183677610-?	NR	4E-8				NR [~ 8900000] (imputed)	N
780	chr2	25628389	25628390	rs774870339	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p23.3	DTNB	rs774870339-T	0.0016	4E-6		2.3967	[1.37-3.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
780	chr2	25629437	25629438	rs6546149	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	2p23.3	DTNB	rs6546149-G	NR	6E-10				Illumina [10806625] (imputed)	N
780	chr2	25633241	25633242	rs10180663	31935283	Du Z	2020-01-01	Blood Adv	A meta-analysis of genome-wide association studies of multiple myeloma among men and women of African ancestry.	Multiple myeloma	1,813 African American and African ancestry cases, 8,871 African American and African ancestry controls	NA	2p23.3	NR	rs10180663-A	0.28	2E-6		1.24	[1.14-1.36]	Illumina [12683648] (imputed)	N
780	chr2	25633241	25633242	rs10180663	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2p23.3	NR	rs10180663-A	0.69	2E-6	(t11;14 vs. controls)	1.64	[1.34-2.02]	Illumina [414804] (imputed)	N
780	chr2	25635770	25635771	rs34845373	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p23.3	NR	rs34845373-G	0.2711	1E-12		0.0372	[0.027-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
780	chr2	25635770	25635771	rs34845373	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p23.3	NR	rs34845373-G	0.2557	5E-12		0.0334	[0.024-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
780	chr2	25643220	25643221	rs17802463	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p23.3	DTNB	rs17802463-G	0.7314	3E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
780	chr2	25654048	25654049	rs7605235	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	2p23.3	DTNB	rs7605235-?		7E-6				NR [~ 3000000] (imputed)	N
780	chr2	25659243	25659244	rs6746082	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	2p23.3	DTNB	rs6746082-A	0.48	2E-10		1.19	[NR]	Illumina [33000000] (imputed)	N
780	chr2	25659243	25659244	rs6746082	22120009	Broderick P	2011-11-27	Nat Genet	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	2p23.3	DTNB	rs6746082-A	0.79	4E-7		1.29	[1.17-1.42]	Illumina [422839]	N
781	chr2	25729689	25729690	rs67442259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p23.3	DTNB	rs67442259-C	NR	1E-9		0.0253917	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
781	chr2	25729689	25729690	rs67442259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p23.3	DTNB	rs67442259-C	NR	3E-10		0.0262875	[0.018-0.034] unit decrease	Affymetrix [319769] (imputed)	N
781	chr2	25729689	25729690	rs67442259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p23.3	DTNB	rs67442259-C	NR	1E-10		0.0271852	[0.019-0.035] unit decrease	Affymetrix [321114] (imputed)	N
781	chr2	25729689	25729690	rs67442259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p23.3	DTNB	rs67442259-C	NR	3E-8		0.0233677	[0.015-0.032] unit decrease	Affymetrix [321169] (imputed)	N
781	chr2	25729689	25729690	rs67442259	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p23.3	NR	rs67442259-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
781	chr2	25770192	25770192	rs527463211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	DTNB	rs527463211-CT	0.201636	4E-11		0.018802037	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
781	chr2	25770192	25770192	rs527463211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	DTNB	rs527463211-CT	0.201627	1E-11		0.01938015	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
781	chr2	25770192	25770192	rs527463211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	DTNB	rs527463211-CT	0.201557	2E-10		0.01813879	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
781	chr2	25770192	25770192	rs527463211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	DTNB	rs527463211-CT	0.201545	5E-10		0.017807877	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
781	chr2	25771476	25771477	rs77931950	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs77931950-T	0.972572	3E-8		0.0339894	[0.022-0.046] unit increase	NR [NR]	N
781	chr2	25778636	25778637	rs12473635	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	2p23.3	DTNB	rs12473635-C	0.2235	5E-9		1.0715816	NR	Affymetrix, Illumina [NR] (imputed)	N
781	chr2	25779494	25779495	rs61712781	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	2p23.3	DTNB	rs61712781-T	0.77607	2E-15				Affymetrix, Illumina [NR] (imputed)	N
782	chr2	25887557	25887558	rs11684202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs11684202-G	NR	4E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix [9000000] (imputed)	N
782	chr2	25887557	25887558	rs11684202	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	2p23.3	DTNB	rs11684202-A	0.86	6E-6		0.0938	[0.053-0.134] unit decrease	Affymetrix [~ 2740000] (imputed)	N
782	chr2	25900632	25900633	rs181853190	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	2p23.3	DTNB	rs181853190-?	NR	7E-6		0.471	[0.26-0.69] unit increase	Illumina [6319684] (imputed)	N
782	chr2	25901512	25901513	rs10203731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs10203731-?	NR	2E-23				NR [~ 8900000] (imputed)	N
782	chr2	25911303	25911304	rs11892454	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	2p23.3	DTNB	rs11892454-A	0.75	9E-6	(Left HG area)	13.16	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
782	chr2	25915977	25915978	rs12713638	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	2p23.3	DTNB, ASXL2	rs12713638-G	0.37	3E-6		0.63	[0.54-0.73]	Illumina [5258576] (imputed)	N
782	chr2	25921815	25921816	rs7582059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p23.3	Y_RNA	rs7582059-G	0.433506	5E-12		0.0167375	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr2	25921815	25921816	rs7582059	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2p23.3	NR	rs7582059-G	0.432988	3E-18		0.017589	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
782	chr2	25922598	25922599	rs186568962	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2p23.3	Intergenic	rs186568962-?	NR	2E-6		18.19	[5.52-59.9]	Illumina [8600000] (imputed)	N
782	chr2	25928445	25928446	rs62130120	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.3	ASXL2	rs62130120-G	0.541489	4E-8		0.0109729	[0.0071-0.0149] unit increase	Affymetrix [NR] (imputed)	N
782	chr2	25942249	25942250	rs13409567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p23.3		rs13409567-A	NR	9E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
782	chr2	25946021	25946022	rs7599023	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p23.3		rs7599023-T	NR	3E-14		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
782	chr2	25946469	25946470	rs6714642	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2p23.3	AC010150.2	rs6714642-G	0.4517	1E-11		0.02354531	[0.017-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
782	chr2	25950158	25950159	rs35190411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p23.3	AC010150.2	rs35190411-C	0.305191	9E-12		0.01642532	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
782	chr2	25950158	25950159	rs35190411	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2p23.3	NR	rs35190411-?		1E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
783	chr2	25974512	25974513	rs72799646	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	ASXL2	rs72799646-A	0.7718	1E-22		0.0218	[0.017-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
783	chr2	25981549	25981549	rs369670596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p23.3	ASXL2	rs369670596-GT	0.298426	7E-13		0.017976481	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr2	25981549	25981549	rs369670596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p23.3	NR	rs369670596-I	0.298635	9E-13		0.016477	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
783	chr2	25989980	25989981	rs11897652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p23.3		rs11897652-?	NR	5E-8				NR [~ 8900000] (imputed)	N
783	chr2	25994219	25994220	rs6721104	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2p23.3	ASXL2	rs6721104-C	0.035738961618537	4E-12		0.0866	[0.062-0.111] SD increase	Illumina [22400000] (imputed)	N
783	chr2	25994415	25994415	rs35322542	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p23.3	ASXL2	rs35322542-AG		7E-13		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
783	chr2	25999210	25999211	rs28562485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p23.3		rs28562485-?	NR	2E-8				NR [~ 8900000] (imputed)	N
783	chr2	25999210	25999211	rs28562485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p23.3		rs28562485-?	NR	6E-10				NR [~ 8900000] (imputed)	N
783	chr2	26004623	26004624	rs34762852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs34762852-A	0.246982	9E-15				Affymetrix, Illumina [24653286] (imputed)	N
783	chr2	26013584	26013586	rs143701005	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p23.3		rs143701005-C	NR	6E-21		0.0519	[0.041-0.063] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
783	chr2	26018734	26018735	rs182335933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs182335933-T	NR	1E-15		0.0431	[0.033-0.054] unit increase	Affymetrix [9000000] (imputed)	N
783	chr2	26023762	26023763	rs11687457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	ASXL2	rs11687457-T	0.504088	4E-27		0.024209691	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr2	26023762	26023763	rs11687457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	ASXL2	rs11687457-T	0.504078	2E-26		0.023858009	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr2	26023762	26023763	rs11687457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	ASXL2	rs11687457-T	0.504064	8E-30		0.025314236	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr2	26040877	26040878	rs115348265	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	2p23.3	NR	rs115348265-T	NR	2E-6		0.3199	[0.19-0.45] SD units decrease	NR [10700000] (imputed)	N
783	chr2	26045030	26045046	rs11269944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p23.3	NR	rs11269944-G	NR	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
783	chr2	26045032	26045047	rs78554878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p23.3		rs78554878-T	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
783	chr2	26047349	26047349	rs745549408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p23.3		rs745549408-TAC	NR	1E-11		0.0377	[0.027-0.048] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
783	chr2	26065591	26065592	rs13392329	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p23.3	NR	rs13392329-T	0.327	6E-7		0.00706146	[0.0043-0.0098] unit decrease	NR [~ 9732723] (imputed)	N
783	chr2	26065594	26065594	rs61348346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p23.3	ASXL2	rs61348346-TATAG	0.415555	1E-15		0.019184155	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
783	chr2	26074016	26074021	rs769219154	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p23.3		rs769219154-C	NR	1E-9		0.0422	[0.029-0.056] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
783	chr2	26076425	26076426	rs9309434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p23.3	NR	rs9309434-T	0.299793	8E-18		0.017222	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
783	chr2	26080393	26080394	rs34579290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	ASXL2	rs34579290-C	0.504179	1E-29		0.02522419	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
784	chr2	26101558	26101559	rs563406543	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p23.3	ASXL2	rs563406543-C	0.992465	6E-13		0.0742598	[0.054-0.094] unit increase	NR [13737936] (imputed)	N
784	chr2	26101558	26101559	rs563406543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p23.3		rs563406543-?	NR	1E-11				NR [~ 8900000] (imputed)	N
784	chr2	26101558	26101559	rs563406543	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.3		rs563406543-?	NR	1E-9		0.0699528	[0.047-0.093] unit increase	Affymetrix [20259828] (imputed)	N
784	chr2	26104263	26104264	rs10193672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p23.3		rs10193672-?	NR	6E-8				NR [~ 8900000] (imputed)	N
784	chr2	26109401	26109402	rs2176182	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p23.3	NR	rs2176182-?	NR	3E-9	(left lingual)			NR [9227495] (imputed)	N
784	chr2	26109750	26109754	rs144079028	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p23.3	NR	rs144079028-T	0.7152	9E-6	(EA)	0.0312	[0.017-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
784	chr2	26112517	26112518	rs12986445	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	2p23.3	DTNB, ASXL2	rs12986445-A	0.74	5E-6		0.17	[NR] unit increase	Illumina [12100000] (imputed)	N
784	chr2	26112517	26112518	rs12986445	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	2p23.3	DTNB, ASXL2	rs12986445-A	0.74	3E-6		0.18	[NR] unit increase	Illumina [12100000] (imputed)	N
784	chr2	26113119	26113120	rs11895615	33710309	Shadrina AS	2021-03-12	Hum Mol Genet	Multivariate genome-wide analysis of immunoglobulin G N-glycosylation identifies new loci pleiotropic with immune function.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	8,090 European ancestry individuals	3,147 European ancestry individuals		ASXL2	rs11895615-C	0.7	6E-10		0.01	[0.0080-0.0120] unit increase	NR [NR] (imputed)	N
784	chr2	26114116	26114117	rs55897013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2p23.3		rs55897013-G	NR	2E-9		0.0136	[0.0093-0.0179] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
784	chr2	26120852	26120853	rs116504838	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p23.3	ASXL2	rs116504838-G	0.974816	6E-10		0.036191	[0.025-0.048] unit decrease	NR [13737936] (imputed)	N
784	chr2	26134496	26134497	rs537241153	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.3		rs537241153-?	NR	3E-10		0.039951	[0.027-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
784	chr2	26136903	26136904	rs189601688	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2p23.3	Intergenic	rs189601688-?	NR	1E-8		11.96	[4.43-32.26]	Illumina [8600000] (imputed)	N
784	chr2	26158962	26158963	rs3856395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.3		rs3856395-?	NR	4E-10				NR [~ 8900000] (imputed)	N
784	chr2	26159939	26159940	rs6546620	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p23.3	KIF3C	rs6546620-C	0.75	3E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
784	chr2	26160373	26160374	rs7604968	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	2p23.3		rs7604968-T		8E-6		1.14	[1.08-1.21]	NR [2286360] (imputed)	N
784	chr2	26163682	26163683	rs114156042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs114156042-?	NR	9E-10				NR [~ 8900000] (imputed)	N
784	chr2	26165527	26165528	rs7578393	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2p23.3	KIF3C	rs7578393-T	0.796	2E-12		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
784	chr2	26165527	26165528	rs7578393	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p23.3	KIF3C	rs7578393-T	0.8	6E-12	(EA)	1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
784	chr2	26192801	26192802	rs72803684	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p23.3	NR	rs72803684-C	0.9538	6E-9		0.0685	[0.045-0.092] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
784	chr2	26192801	26192802	rs72803684	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p23.3	NR	rs72803684-C	0.9555	6E-9		0.0666	[0.044-0.089] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
784	chr2	26206254	26206255	rs2384319	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p23.3	NR	rs2384319-G	0.095799	2E-11		0.021449	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
785	chr2	26228206	26228207	rs112288323	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p23.3	U6, RAB10	rs112288323-T		2E-6		0.302	unit increase	Illumina [5767231] (imputed)	N
785	chr2	26241771	26241772	rs13020237	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p23.3		rs13020237-G	NR	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
785	chr2	26249898	26249899	rs68184094	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	2p23.3	U6, RAB10	rs68184094-A		4E-6		0.2298	unit increase	Illumina [5767231] (imputed)	N
785	chr2	26249898	26249899	rs68184094	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	2p23.3	U6, RAB10	rs68184094-A	NR	2E-6		0.2363	unit increase	Illumina [5767231] (imputed)	N
785	chr2	26251360	26251361	rs4665809	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	2p23.3	NR	rs4665809-?	NR	5E-6	(order_Rhizobiales)	0.6677329	[0.35-0.99] unit decrease	Affymetrix [210924]	N
785	chr2	26253517	26253518	rs114672190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p23.3	RAB10, AC013449.1	rs114672190-T	0.058895	7E-10		0.029370274	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr2	26255262	26255263	rs6749855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs6749855-G	0.813919	7E-33				Affymetrix, Illumina [24246363] (imputed)	N
785	chr2	26264435	26264436	rs3856396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p23.3	RAB10	rs3856396-G	0.798613	4E-10		0.0211038	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
785	chr2	26272601	26272602	rs13388915	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	2p23.3	RAB10	rs13388915-?		8E-6	(EA)			Illumina [NR]	N
785	chr2	26281458	26281459	rs1560868	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2p23.3	RAB10	rs1560868-A	0.214	9E-6		0.0077	[0.0044-0.011] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
785	chr2	26291145	26291146	rs2384322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p23.3		rs2384322-?	NR	5E-35				NR [~ 8900000] (imputed)	N
785	chr2	26291564	26291565	rs4233710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs4233710-A	0.818135	2E-42				Affymetrix, Illumina [20825802] (imputed)	N
785	chr2	26291564	26291565	rs4233710	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p23.3	NR	rs4233710-A	0.796265	2E-41		0.032097	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
785	chr2	26322080	26322080	rs11281600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p23.3		rs11281600-AATGTGTTTT	NR	3E-22		0.0257	[0.021-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
785	chr2	26322080	26322080	rs11281600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p23.3		rs11281600-AATGTGTTTT	NR	2E-28		0.0293	[0.024-0.034] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
786	chr2	26357293	26357294	rs28699126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p23.3	NR	rs28699126-T	0.782382	6E-33		0.026439	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
786	chr2	26357293	26357294	rs28699126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p23.3	RAB10	rs28699126-T	0.7858	9E-13		0.03093029	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
786	chr2	26357747	26357748	rs2243834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p23.3	RAB10	rs2243834-T	0.789124	6E-28		0.0272413	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
786	chr2	26357747	26357748	rs2243834	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p23.3	RAB10	rs2243834-T	0.789121	4E-36		0.033916343	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
786	chr2	26357747	26357748	rs2243834	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p23.3	RAB10	rs2243834-T	0.7896	4E-9		0.02553421	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
786	chr2	26358155	26358156	rs142787485	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p23.3	RAB10	rs142787485-A	0.960393	3E-8		0.0305106	[0.02-0.041] unit increase	Affymetrix [NR] (imputed)	N
786	chr2	26366204	26366205	rs892448	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs892448-G	0.816096	4E-16				Affymetrix, Illumina [21126107] (imputed)	N
786	chr2	26392641	26392642	rs115511756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs115511756-A	NR	2E-9		0.0476	[0.032-0.063] unit increase	Affymetrix [9000000] (imputed)	N
786	chr2	26399213	26399214	rs4665830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p23.3		rs4665830-?	NR	5E-9				NR [~ 8900000] (imputed)	N
786	chr2	26400777	26400778	rs7601866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs7601866-C	0.299594	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
787	chr2	26519245	26519245	rs571446846	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	2p23.3		rs571446846-A	0.0016	8E-6		1.1214	[0.63-1.61] unit increase	Affymetrix, Illumina [NR] (imputed)	N
787	chr2	26526418	26526419	rs6753473	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	2p23.3	GPR113	rs6753473-G	0.052	4E-6	(Additive model)			Affymetrix [271817]	N
787	chr2	26534338	26534339	rs1338835164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Triglyceride levels	437,532 European ancestry individuals	NA	2p23.3		rs1338835164-?	NR	3E-9		1.11898	[0.77-1.47] unit decrease	NR [9800000] (imputed)	N
787	chr2	26534338	26534339	rs1338835164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Total cholesterol levels	437,878 European ancestry individuals	NA	2p23.3		rs1338835164-?	NR	8E-9		1.08855	[0.73-1.45] unit decrease	NR [9800000] (imputed)	N
787	chr2	26534338	26534339	rs1338835164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct low density lipoprotein cholesterol levels	437,068 European ancestry individuals	NA	2p23.3		rs1338835164-?	NR	4E-11		1.27007	[0.91-1.63] unit decrease	NR [9800000] (imputed)	N
787	chr2	26584309	26584310	rs115660648	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p23.3	EPT1	rs115660648-T	0.455667	2E-8		0.0110272	[0.0072-0.0149] unit increase	Affymetrix [NR] (imputed)	N
787	chr2	26590526	26590527	rs11690462	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p23.3	EPT1	rs11690462-A	0.316	2E-7		0.036	[0.022-0.05] unit decrease	Affymetrix [7947838] (imputed)	N
787	chr2	26597433	26597434	rs374048982	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p23.3		rs374048982-AT	0.458243	2E-8		0.02333	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
788	chr2	26667129	26667130	rs3795958	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p23.3	OTOF, CCDC164	rs3795958-G		4E-6		0.2965	unit increase	Illumina [5767231] (imputed)	N
788	chr2	26667129	26667130	rs3795958	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	2p23.3	OTOF, CCDC164	rs3795958-G	NR	2E-6		0.2394	unit increase	Illumina [5767231] (imputed)	N
788	chr2	26694651	26694652	rs183562580	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p23.3	Intergenic	rs183562580-A	NR	6E-7	(within families)	4.996	unit decrease	Affymetrix [up to 15107142] (imputed)	N
789	chr2	26782620	26782621	rs1011108	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	2p23.3	OTOF, C2Orf70, CIB4	rs1011108-T	0.341	2E-6	(P. gingi)	1.79	[1.40-2.27]	Affymetrix [~ 2500000] (imputed)	N
789	chr2	26825697	26825698	rs146495511	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	CIB4	rs146495511-A	0.998	3E-6	(AA)	1.449	NR unit increase	Illumina [NR] (imputed)	N
789	chr2	26837394	26837395	rs1731240	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to olanzapine in schizophrenia	412 Han Chinese ancestry cases	415 Han Chinese ancestry cases	2p23.3	CIB4	rs1731240-A	NR	3E-6		6.9	[4.02-9.78] unit increase	Illumina [6097251] (imputed)	N
789	chr2	26842145	26842146	rs732990	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p23.3	CIB4	rs732990-C	0.4431	4E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
789	chr2	26842145	26842146	rs732990	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p23.3	CIB4	rs732990-C	0.4431	3E-7		0.0122	[0.0075-0.0169] unit increase	Affymetrix [19819130] (imputed)	N
789	chr2	26853745	26853746	rs1275955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p23.3		rs1275955-?	NR	1E-10				NR [~ 8900000] (imputed)	N
789	chr2	26860821	26860822	rs17005545	31294817	Chen J	2019-07-11	Nicotine Tob Res	Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.	Fagerstr?m test for nicotine dependence	19,431 European ancestry individuals	7,010 European ancestry individuals	2p23.3	CIB4	rs17005545-T		3E-7		0.22	[0.14-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
790	chr2	26887424	26887425	rs1731229	32004448	Savage SA	2020-01-30	Am J Hum Genet	Genome-wide Association Study Identifies HLA-DPB1 as a Significant Risk Factor for Severe Aplastic Anemia.	Severe aplastic anemia	359 European ancestry cases, 1,396 European ancestry controls	175 European ancestry cases, 1,059 European ancestry controls	2p23.3	CIB4	rs1731229-?	NR	5E-6		1.3888888	[NR]	Illumina [688067]	N
790	chr2	26897500	26897501	rs1275957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.3		rs1275957-?	NR	8E-9				NR [~ 8900000] (imputed)	N
790	chr2	26909175	26909176	rs181043431	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	Intergenic	rs181043431-T	0.999	4E-6	(AA)	0.439	unit increase	Illumina [NR] (imputed)	N
790	chr2	26911508	26911509	rs1275984	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2p23.3	KCNK3	rs1275984-A	0.42	4E-300	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		7E-22		0.537	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		3E-20	(EA)	0.564	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	NR	rs1275984-A		2E-33		0.473	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		7E-7		0.185	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		2E-6	(EA)	0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	NR	rs1275984-A		2E-15		0.208	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		8E-21	(EA)	0.371	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	NR	rs1275984-A		2E-22		0.354	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911508	26911509	rs1275984	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	NR	rs1275984-A		6E-28		0.263	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26911744	26911745	rs1275985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p23.3		rs1275985-?	NR	5E-45				NR [~ 8900000] (imputed)	N
790	chr2	26911744	26911745	rs1275985	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2p23.3	KCNK3	rs1275985-T	0.59	3E-32	(AA, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26912078	26912079	rs1275986	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2p23.3	KCNK3	rs1275986-A	0.59	5E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26914363	26914364	rs1275988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	2p23.3		rs1275988-T	NR	2E-35		0.0848	[0.071-0.098] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
790	chr2	26914363	26914364	rs1275988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2p23.3		rs1275988-T	NR	2E-41		0.0853	[0.073-0.098] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
790	chr2	26914363	26914364	rs1275988	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	2p23.3	NR	rs1275988-?	NR	3E-6		0.4763869	[0.28-0.67] unit decrease	Illumina [32101933] (imputed)	N
790	chr2	26914363	26914364	rs1275988	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	2p23.3	KCNK3	rs1275988-C	0.384127	2E-34		0.09909587	[0.083-0.115] unit increase	Affymetrix [7288503] (imputed)	N
790	chr2	26914363	26914364	rs1275988	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	2p23.3	KCNK3	rs1275988-C	0.382355	3E-11		0.05663824	[0.04-0.073] unit increase	Affymetrix [7288503] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p23.3		rs1275988-?	NR	1E-37				NR [~ 8900000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.22	1E-19	(Japanese)	0.817	[0.64-0.99] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.2214	8E-10	(Japanese)	0.3833	[0.26-0.5] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.2214	3E-18	(Japanese)	0.5563	[0.43-0.68] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.2214	1E-13	(Japanese)	0.1177	[0.087-0.149] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.2214	1E-13	(Japanese)	0.4257	[0.31-0.54] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	2p23.3	KCNK3	rs1275988-?	NR	5E-61				Affymetrix, Illumina [18800000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	2p23.3	KCNK3	rs1275988-?		1E-51				Affymetrix, Illumina [18800000] (imputed)	N
790	chr2	26914363	26914364	rs1275988	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.605	2E-15	(EA, initial)	0.577	[0.43-0.72] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
790	chr2	26914363	26914364	rs1275988	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.605	6E-8	(EA, initial)	0.257	[0.16-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
790	chr2	26914363	26914364	rs1275988	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.605	3E-13	(EA, initial)	0.324	[0.24-0.41] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		8E-20	(EA)	0.556	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		1E-21		0.532	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		4E-33		0.467	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		9E-7		0.182	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		4E-6	(EA)	0.189	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		2E-15		0.207	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		3E-22		0.352	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		2E-20	(EA)	0.366	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p23.3	CIB4, KCNK3	rs1275988-C		1E-27		0.259	unit increase	Affymetrix [at least 2696785] (imputed)	N
790	chr2	26914363	26914364	rs1275988	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2p23.3	KCNK3	rs1275988-T	0.5271585942719449	5E-21		0.36745366	[0.29-0.44] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
790	chr2	26914786	26914787	rs935168	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.3	KCNK3	rs935168-G	0.345464	8E-12		0.0142962	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
790	chr2	26915623	26915624	rs12476527	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2p23.3		rs12476527-T	0.222705487	6E-15		0.07653641	[0.057-0.096] unit decrease	Illumina [13134967] (imputed)	N
790	chr2	26915623	26915624	rs12476527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	KCNK3	rs12476527-T	0.620554	1E-11		0.015755376	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
790	chr2	26915623	26915624	rs12476527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	KCNK3	rs12476527-T	0.620554	3E-11		0.015413406	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
790	chr2	26915623	26915624	rs12476527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p23.3	KCNK3	rs12476527-T	0.620711	5E-9		0.013401338	[0.0089-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
790	chr2	26915623	26915624	rs12476527	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p23.3	KCNK3	rs12476527-T	0.5692	6E-50		0.5149	[0.45-0.58] mmHg decrease	Affymetrix [NR] (imputed)	N
790	chr2	26915623	26915624	rs12476527	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p23.3	KCNK3	rs12476527-T	0.5707	3E-21		0.2461	[0.2-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
790	chr2	26915623	26915624	rs12476527	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Stroke	40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls	NA	2p23.3	KCNK3	rs12476527-?	NR	6E-8				NR [~ 8000000] (imputed)	N
790	chr2	26915623	26915624	rs12476527	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke	34,217 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,146 African American controls, 222 Asian ancestry cases, 333 Asian ancestry controls, 555 Latin American cases, 692 Latin American controls	NA	2p23.3	KCNK3	rs12476527-?	NR	1E-6				NR [~ 8000000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls	NA	2p23.3	KCNK3	rs35021474-C	0.385032	2E-8		0.10352925	[0.067-0.14] unit increase	Affymetrix [7288503] (imputed)	N
790	chr2	26916843	26916844	rs35021474	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs35021474-C	0.8	1E-20	(Japanese)	0.9281	[0.73-1.12] unit increase	Illumina [6200000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p23.3	KCNK3	rs35021474-C	0.799	2E-10	(Japanese)	0.4395	[0.3-0.57] unit increase	Illumina [6200000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs35021474-C	0.799	5E-19	(Japanese)	0.6279	[0.49-0.77] unit increase	Illumina [6200000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p23.3	KCNK3	rs35021474-C	0.799	2E-13	(Japanese)	0.131	[0.096-0.166] unit increase	Illumina [6200000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs35021474-C	0.799	6E-14	(Japanese)	0.4774	[0.35-0.6] unit increase	Illumina [6200000] (imputed)	N
790	chr2	26916843	26916844	rs35021474	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	2p23.3	KCNK3	rs35021474-?	NR	8E-19		0.04526	[0.035-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
790	chr2	26916843	26916844	rs35021474	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	2p23.3	KCNK3	rs35021474-?	NR	6E-13		0.03652	[0.027-0.046] unit decrease	Illumina [6108953] (imputed)	N
790	chr2	26916968	26916969	rs1275980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p23.3		rs1275980-T	NR	3E-42		0.0273	[0.023-0.031] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
790	chr2	26916968	26916969	rs1275980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p23.3		rs1275980-T	NR	5E-42		0.0277	[0.024-0.032] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
790	chr2	26916968	26916969	rs1275980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ischemic stroke	11,929 European ancestry cases, 472,192 European ancestry controls, 22,664 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	2p23.3		rs1275980-T	NR	5E-10		0.0582	[0.04-0.077] unit decrease	Affymetrix, Illumina [25844498] (imputed)	N
790	chr2	26916968	26916969	rs1275980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p23.3		rs1275980-T	NR	7E-30		0.024	[0.02-0.028] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
790	chr2	26916968	26916969	rs1275980	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	2p23.3	KCNK3	rs1275980-?	NR	1E-8		0.02649	[0.017-0.036] unit increase novel	Illumina [6108953] (imputed)	N
790	chr2	26919088	26919089	rs1275982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p23.3		rs1275982-T	NR	5E-34		0.0639	[0.054-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
790	chr2	26919088	26919089	rs1275982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	NR	rs1275982-T	0.2261	2E-28	(East Asian)	0.8478	[0.7-1] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26919088	26919089	rs1275982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	NR	rs1275982-T	0.2261	2E-27	(East Asian)	0.5839	[0.48-0.69] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26919088	26919089	rs1275982	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	NR	rs1275982-T	0.2261	5E-20	(East Asian)	0.4416	[0.35-0.54] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p23.3		rs1731249-A	NR	3E-21		0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
790	chr2	26920024	26920025	rs1731249	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1731249-A	0.23	1E-20	(Japanese)	0.8406	[0.66-1.02] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p23.3	KCNK3	rs1731249-A	0.2268	1E-10	(Japanese)	0.4002	[0.28-0.52] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1731249-A	0.2268	6E-19	(Japanese)	0.5681	[0.44-0.69] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1731249-A	0.2268	5E-14	(Japanese)	0.1198	[0.089-0.151] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p23.3	KCNK3	rs1731249-A	0.2268	7E-14	(Japanese)	0.4317	[0.32-0.54] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26920024	26920025	rs1731249	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2p23.3	KCNK3	rs1731249-A	0.59	1E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26920024	26920025	rs1731249	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	2p23.3	KCNK3	rs1731249-?	NR	1E-21		0.04372	[0.035-0.053] unit decrease	Illumina [6108953] (imputed)	N
790	chr2	26920024	26920025	rs1731249	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	2p23.3	KCNK3	rs1731249-?	NR	4E-11		0.03002	[0.021-0.039] unit decrease	Illumina [6108953] (imputed)	N
790	chr2	26923094	26923095	rs1275978	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p23.3	NR	rs1275978-T	0.2459	1E-14	(East Asian)	0.4045	[0.3-0.51] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26923094	26923095	rs1275978	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2p23.3	KCNK3	rs1275978-T	0.59	6E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26928810	26928811	rs11126666	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	2p23.3	KCNK3	rs11126666-A	0.255998	7E-31		0.106201254	[0.088-0.124] unit increase	Affymetrix [7288503] (imputed)	N
790	chr2	26928810	26928811	rs11126666	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p23.3	NR	rs11126666-G	NR	5E-11		0.019	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
790	chr2	26928810	26928811	rs11126666	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	2p23.3	KCNK3	rs11126666-G	0.745	5E-6		0.0117	[0.0066-0.0168] unit decrease	Affymetrix [11535925] (imputed)	N
790	chr2	26928810	26928811	rs11126666	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p23.3	KCNK3	rs11126666-A	0.28	1E-13		0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
790	chr2	26928810	26928811	rs11126666	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	KCNK3	rs11126666-A	0.285	1E-8	(EA, men)	0.026	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
790	chr2	26928810	26928811	rs11126666	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	KCNK3	rs11126666-A	0.283	1E-9	(EA)	0.021	[0.014-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
790	chr2	26928810	26928811	rs11126666	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.3	KCNK3	rs11126666-A	0.283	1E-9		0.02	[0.014-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
790	chr2	26929095	26929096	rs74887298	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p23.3	KCNK3	rs74887298-A	0.0397717108979706	8E-7		0.0067409	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
790	chr2	26929281	26929282	rs13394970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p23.3		rs13394970-G	0.226517697	1E-10		0.06423419	[0.045-0.084] unit decrease	Illumina [13134967] (imputed)	N
790	chr2	26929281	26929282	rs13394970	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p23.3	KCNK3	rs13394970-T	0.390982	2E-10		0.0135657	[0.0094-0.0177] unit decrease	Affymetrix [NR] (imputed)	N
790	chr2	26930410	26930411	rs1731243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p23.3		rs1731243-T	0.226967	4E-9		0.0193323	[0.013-0.026] unit decrease	Illumina [13479924] (imputed)	N
790	chr2	26930410	26930411	rs1731243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	2p23.3		rs1731243-T	NR	3E-13		0.1048	[0.077-0.133] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
790	chr2	26930410	26930411	rs1731243	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p23.3	KCNK3	rs1731243-C	0.393355	7E-10		0.0131656	[0.009-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
790	chr2	26930410	26930411	rs1731243	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2p23.3	KCNK3	rs1731243-C	0.394283	8E-26		0.064796716	[0.053-0.077] unit increase	Affymetrix [7288503] (imputed)	N
790	chr2	26930410	26930411	rs1731243	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p23.3	NR	rs1731243-T	0.2465	2E-18	(East Asian)	0.1215	[0.094-0.149] unit decrease	Illumina [6200000] (imputed)	N
790	chr2	26930410	26930411	rs1731243	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2p23.3	KCNK3	rs1731243-T	0.61	8E-30	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26930410	26930411	rs1731243	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2p23.3	KCNK3	rs1731243-T	0.61	1E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26932030	26932031	rs2586886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	2p23.3		rs2586886-T	0.226052	5E-24		0.0410333	[0.033-0.049] unit decrease	Illumina [13477770] (imputed)	N
790	chr2	26932030	26932031	rs2586886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	2p23.3		rs2586886-T	0.22604	1E-11		0.0280257	[0.02-0.036] unit decrease	Illumina [13477769] (imputed)	N
790	chr2	26932030	26932031	rs2586886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	2p23.3		rs2586886-T	0.226041	2E-22		0.0406346	[0.032-0.049] unit decrease	Illumina [13477767] (imputed)	N
790	chr2	26932030	26932031	rs2586886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	2p23.3		rs2586886-T	0.226056	5E-16		0.0344381	[0.026-0.043] unit decrease	Illumina [13477770] (imputed)	N
790	chr2	26932030	26932031	rs2586886	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	2p23.3	KCNK3	rs2586886-?	NR	4E-9		0.037121	NR unit decrease	Affymetrix [464137]	N
790	chr2	26932030	26932031	rs2586886	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	2p23.3	NR	rs2586886-?	NR	4E-6		0.7272279	[0.42-1.04] unit decrease	Illumina [32101933] (imputed)	N
790	chr2	26932030	26932031	rs2586886	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	2p23.3	NR	rs2586886-?	NR	8E-8		0.5456713	[0.35-0.74] unit decrease	Illumina [32101933] (imputed)	N
790	chr2	26932030	26932031	rs2586886	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	2p23.3	KCNK3	rs2586886-T	0.61	3E-14	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26932030	26932031	rs2586886	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Diastolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	2p23.3	KCNK3	rs2586886-G	0.32	5E-9	(Hispanic)	0.72	[0.48-0.96] unit increase	Illumina [up to 196725]	N
790	chr2	26932030	26932031	rs2586886	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2p23.3	KCNK3	rs2586886-T	0.599	6E-12		0.404	[0.29-0.52] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
790	chr2	26932030	26932031	rs2586886	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2p23.3	KCNK3	rs2586886-T	0.599	2E-12		0.254	[0.18-0.32] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
790	chr2	26932795	26932796	rs1275923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	2p23.3		rs1275923-T	NR	7E-13		0.0518	[0.038-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
790	chr2	26932795	26932796	rs1275923	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	2p23.3		rs1275923-T	0.6088546	6E-14		0.9		Affymetrix [15650645] (imputed)	N
790	chr2	26932795	26932796	rs1275923	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	2p23.3	KCNK3	rs1275923-T	0.61	3E-34	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
790	chr2	26932886	26932887	rs1275922	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	2p23.3	KCNK3	rs1275922-G	0.74	2E-8				NR [7320282]	N
790	chr2	26932886	26932887	rs1275922	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	2p23.3	KCNK3	rs1275922-G	0.74	6E-9		0.2579	[0.17-0.34] years increase	NR [up to 9000000] (imputed)	N
790	chr2	26938566	26938567	rs72800469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs72800469-A	NR	3E-10		0.0391	[0.027-0.051] unit increase	Affymetrix [9000000] (imputed)	N
790	chr2	26941494	26941494	rs397934918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p23.3		rs397934918-CT	NR	1E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
790	chr2	26943116	26943117	rs4665896	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p23.3	NR	rs4665896-C	0.4731	2E-15		0.01975691	[0.015-0.025] unit increase	Affymetrix [10549349] (imputed)	N
790	chr2	26946787	26946788	rs35860194	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs35860194-A	NR	4E-11		0.0635	[0.045-0.082] unit increase	Affymetrix [9000000] (imputed)	N
790	chr2	26946787	26946788	rs35860194	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs35860194-C	0.983989	2E-12		0.0575354	[0.042-0.074] unit decrease	NR [NR]	N
790	chr2	26948412	26948413	rs12463727	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p23.3	KCNK3	rs12463727-G	0.473399	6E-12		0.0141242	[0.01-0.018] unit decrease	NR [16516521] (imputed)	N
790	chr2	26953353	26953354	rs1731260	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p23.3		rs1731260-T	0.47	5E-16				NR [NR] (imputed)	N
790	chr2	26953353	26953354	rs1731260	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p23.3		rs1731260-T	0.47	3E-14		0.011	% increase	NR [NR] (imputed)	N
790	chr2	26953539	26953540	rs1627854	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p23.3	KCNK3	rs1627854-A	0.528	4E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
790	chr2	26953581	26953582	rs1731259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.3		rs1731259-?	NR	3E-19				NR [~ 8900000] (imputed)	N
790	chr2	26953849	26953850	rs1631026	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p23.3	KCNK3	rs1631026-C	0.527217	6E-15		0.0107027	[0.008-0.0134] unit decrease	Affymetrix [12370749]	N
790	chr2	26955620	26955621	rs3739081	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p23.3	NR	rs3739081-A	0.476391319841233	2E-9		0.015953999	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
790	chr2	26960054	26960055	rs62128379	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	2p23.3	KCNK3	rs62128379-T	0.85	6E-6		1.13	[1.07-1.19]	NR [~ 55000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	3E-24		0.0448	[0.036-0.053] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	1E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	7E-13		0.0332	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	5E-9		0.0258	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	1E-9		0.0269	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	4E-17		0.037	[0.028-0.046] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27015610	27015612	rs66485845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs66485845-C	NR	5E-13		0.0319	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27063259	27063260	rs12474330	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Reflection (response to stress)	1,758 European ancestry individuals	NA	2p23.3	DPYSL5	rs12474330-A	NR	7E-6		0.0882	NR unit decrease	Illumina [3474641] (imputed)	N
791	chr2	27063260	27063261	rs12470698	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p23.3	NA	rs12470698-A	0.5698	2E-9		0.0103	[0.007-0.0136] unit increase	NR [~ 27400000] (imputed)	N
791	chr2	27066102	27066103	rs2196150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.3	DPYSL5	rs2196150-T	0.384446	5E-12		0.01559617	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
791	chr2	27068576	27068577	rs1368888	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p23.3	DPYSL5	rs1368888-G	0.59222	1E-12	(-38 ms)	0.0402868	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
791	chr2	27079964	27079965	rs77808205	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs77808205-T	0.91579	9E-9		0.0216878	[0.014-0.029] unit increase	NR [NR]	N
791	chr2	27083268	27083269	rs11887277	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.3	DPYSL5	rs11887277-A	0.458	5E-6	(Urinary creatinine )	0.04	[NR] mmol/d increase	Illumina [899892]	N
791	chr2	27116098	27116099	rs138449027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p23.3		rs138449027-?	NR	1E-10				NR [~ 8900000] (imputed)	N
791	chr2	27125194	27125195	rs62128447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs62128447-G	NR	8E-13		0.0422	[0.031-0.054] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27125194	27125195	rs62128447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs62128447-G	NR	4E-12		0.0408	[0.029-0.052] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27125194	27125195	rs62128447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs62128447-G	NR	3E-9		0.0367	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
791	chr2	27125194	27125195	rs62128447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs62128447-G	NR	3E-9		0.0349	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
791	chr2	27128528	27128529	rs509047	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p23.3	NR	rs509047-?		5E-9				NR [7428630] (imputed)	N
792	chr2	27137670	27137671	rs12612619	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p23.3	DPYSL5	rs12612619-T	0.3465	3E-6		1.462	[1.245-1.715]	Affymetrix, Illumina [14074516] (imputed)	N
792	chr2	27148654	27148654	rs11386753	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p23.3	NR	rs11386753-?	0.3956	2E-8	(average)	0.003493313	[0.0023-0.0047] unit increase	Affymetrix, Illumina [NR]	N
792	chr2	27152873	27152874	rs1371614	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2p23.3	DPYSL5	rs1371614-T	0.2511	6E-16		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	2E-16		0.0227	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	3E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	7E-11		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	9E-15		0.0214	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	8E-10		0.0169	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	4E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	2E-16		0.0227	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2p23.3	NR	rs1371614-T	NR	2E-15		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	DPYSL5	rs1371614-T	0.254	2E-12		3.976E-4	[-0.00083-0.00162] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
792	chr2	27152873	27152874	rs1371614	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	DPYSL5	rs1371614-T	0.2518	3E-11		0.0189	[0.013-0.025] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
792	chr2	27161475	27161476	rs72804857	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	DPYSL5	rs72804857-C	0.1666	5E-6	(East Asian)	0.0353	[0.02-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
792	chr2	27161475	27161476	rs72804857	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	DPYSL5	rs72804857-C	0.1499	3E-10		0.0281	[0.019-0.037] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
792	chr2	27161475	27161476	rs72804857	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p23.3	DPYSL5	rs72804857-C	0.1451	8E-6		0.024791	[0.014-0.036] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
792	chr2	27161475	27161476	rs72804857	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p23.3	NR	rs72804857-C	0.1533	4E-8	(men)	0.0382	[0.024-0.052] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
792	chr2	27164805	27164806	rs3820823	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p23.3		rs3820823-G	0.38	4E-53		15.34	z score increase	Affymetrix [9061022] (imputed)	N
792	chr2	27166821	27166822	rs6707735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p23.3	Intergenic	rs6707735-T	0.3914	4E-8	(MTAG)	0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr2	27169841	27169842	rs11126784	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p23.3	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs11126784-?		1E-16				NR [7428630] (imputed)	N
792	chr2	27173248	27173249	rs11904656	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	2p23.3		rs11904656-G	0.37	8E-7				NR [13131314] (imputed)	N
792	chr2	27173248	27173249	rs11904656	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p23.3		rs11904656-G	0.37	2E-94		20.61	z score increase	Affymetrix [9061022] (imputed)	N
792	chr2	27176093	27176094	rs115268969	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs115268969-T	NR	4E-9		0.0499	[0.033-0.067] unit increase	Affymetrix [9000000] (imputed)	N
792	chr2	27176093	27176094	rs115268969	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs115268969-T	NR	6E-11		0.0583	[0.041-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27177427	27177428	rs61007968	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	2p23.3	DPYSL5	rs61007968-C	0.213	3E-6		0.0109	[0.006-0.0158] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
792	chr2	27177544	27177545	rs11902826	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	2p23.3		rs11902826-A	0.37	4E-8				NR [13131314] (imputed)	N
792	chr2	27177544	27177545	rs11902826	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p23.3		rs11902826-A	0.37	1E-27		10.89	z score increase	Affymetrix [9061022] (imputed)	N
792	chr2	27178971	27178972	rs4992933	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p23.3	NR	rs4992933-C	0.3802	1E-17				NR [9056863] (imputed)	N
792	chr2	27184872	27184873	rs62130499	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p23.3	NR	rs62130499-A	0.08784599999999998	7E-12		0.0103483	[0.0074-0.0133] unit increase	Affymetrix [16582909] (imputed)	N
792	chr2	27184872	27184873	rs62130499	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p23.3	NR	rs62130499-A	0.08784599999999998	1E-7		0.00917691	[0.0059-0.0124] unit increase	Affymetrix [16582965] (imputed)	N
792	chr2	27192106	27192107	rs76471230	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs76471230-C	NR	3E-14		0.0427	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
792	chr2	27198665	27198666	rs72806909	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p23.3	MAPRE3	rs72806909-A	0.042	4E-8		0.757	[0.49-1.03] unit increase	Affymetrix [NR] (imputed)	N
792	chr2	27205385	27205386	rs187943782	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	MAPRE3	rs187943782-T	0.994	2E-6	(AA)	0.116	unit increase	Illumina [NR] (imputed)	N
792	chr2	27213936	27213937	rs6705514	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p23.3	Intergenic	rs6705514-T	0.4036	2E-9	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr2	27215972	27215973	rs62130503	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	2p23.3	MAPRE3	rs62130503-T	0.05	1E-10				NR [9312144] (imputed)	N
792	chr2	27229078	27229079	rs12997235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p23.3	Intergenic	rs12997235-A	0.6094	8E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
792	chr2	27243000	27243001	rs10207670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.3	MAPRE3	rs10207670-T	0.295257	2E-20		0.022497194	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
792	chr2	27243000	27243001	rs10207670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.3	MAPRE3	rs10207670-T	0.295228	1E-16		0.020086292	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
792	chr2	27247831	27247832	rs11678188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p23.3	MAPRE3	rs11678188-C	0.630671	1E-17		0.01962926	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
793	chr2	27274072	27274073	rs72808941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs72808941-A	NR	1E-21		0.0565	[0.045-0.068] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27274072	27274073	rs72808941	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs72808941-A	NR	1E-10		0.0384	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27289676	27289677	rs144423449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p23.3	NR	rs144423449-?	NR	8E-6		4.479	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
793	chr2	27290524	27290525	rs11681145	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs11681145-A	0.297606	9E-12		0.0147622	[0.011-0.019] unit decrease	NR [NR]	N
793	chr2	27291660	27291661	rs7575465	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p23.3	NR	rs7575465-G	0.4429	1E-17				NR [9056863] (imputed)	N
793	chr2	27291660	27291661	rs7575465	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p23.3	WLS	rs7575465-?		6E-9				NR [7428630] (imputed)	N
793	chr2	27295884	27295885	rs4665943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.3		rs4665943-?	NR	3E-8				NR [~ 8900000] (imputed)	N
793	chr2	27315251	27315252	rs2304681	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	2p23.3	KHK	rs2304681-A	0.37	1E-7		0.028	[0.018-0.038] unit decrease	Affymetrix [NR] (imputed)	N
793	chr2	27323962	27323963	rs76649658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs76649658-G	NR	7E-14		0.0421	[0.031-0.053] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27323962	27323963	rs76649658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs76649658-G	NR	8E-13		0.0403	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27323962	27323963	rs76649658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs76649658-G	NR	2E-9		0.0356	[0.024-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27323962	27323963	rs76649658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs76649658-G	NR	6E-11		0.0368	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27326066	27326067	rs116170113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs116170113-A	NR	5E-22		0.0943	[0.075-0.114] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27326066	27326067	rs116170113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs116170113-A	NR	3E-9		0.0612	[0.041-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27336826	27336827	rs12617392	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	2p23.3	CGREF1	rs12617392-A	0.44	4E-11				NR [9312144] (imputed)	N
793	chr2	27336826	27336827	rs12617392	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	2p23.3	CGREF1	rs12617392-C	0.56	2E-8		1.023	[1.015-1.031]	Affymetrix [7736308] (imputed)	N
793	chr2	27336826	27336827	rs12617392	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	2p23.3	NR	rs12617392-A	0.45	2E-8		0.03	[0.02-0.04] unit decrease	Affymetrix [NR] (imputed)	N
793	chr2	27342893	27342894	rs7588926	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	2p23.3	CGREF1	rs7588926-?		9E-6				Affymetrix, Illumina [1348798]	N
793	chr2	27359886	27359887	rs11121	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p23.3		rs11121-T	NR	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
793	chr2	27365591	27365592	rs35803469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs35803469-T	NR	1E-10		0.0496	[0.035-0.065] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27368587	27368588	rs28489942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs28489942-C	NR	8E-23		0.0246	[0.02-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27368587	27368588	rs28489942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs28489942-C	NR	9E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27368587	27368588	rs28489942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs28489942-C	NR	4E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
793	chr2	27368587	27368588	rs28489942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs28489942-C	NR	2E-12		0.0177	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27368587	27368588	rs28489942	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs28489942-C	NR	6E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
793	chr2	27384709	27384710	rs1659684	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2p23.3	GCKR	rs1659684-?	NR	1E-11		0.01518	[0.01-0.02] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
793	chr2	27386798	27386799	rs1275539	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs1275539-?	NR	1E-11		0.01444	[0.01-0.019] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
793	chr2	27387428	27387429	rs2384575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2p23.3		rs2384575-C	0.290849	4E-9		0.014553921	[0.0097-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
793	chr2	27389194	27389195	rs1275541	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p23.3	TCF23, SLC5A6	rs1275541-A	0.497913	4E-11	(pantothenate)	0.15	[0.1-0.2] unit decrease	Illumina [13039987] (imputed)	N
794	chr2	27406647	27406648	rs76728519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p23.3		rs76728519-T	0.029563	7E-12		0.0513853	[0.039-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr2	27406647	27406648	rs76728519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs76728519-T	0.0278981	6E-12				Affymetrix, Illumina [21126107] (imputed)	N
794	chr2	27406647	27406648	rs76728519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2p23.3	NR	rs76728519-T	0.029035	1E-14		0.046552	[0.035-0.058] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
794	chr2	27408039	27408040	rs77585907	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs77585907-T	NR	8E-11		0.0738	[0.052-0.096] unit increase	Affymetrix [9000000] (imputed)	N
794	chr2	27424635	27424636	rs1395	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	2p23.3	SLC5A6	rs1395-G	NR	1E-7	(conditioned on rs1260326)	0.021	[0.013-0.029] unit increase	Illumina [106489]	N
794	chr2	27424635	27424636	rs1395	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p23.3	SLC5A6	rs1395-A	0.7	8E-11	(pantothenate)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
794	chr2	27448170	27448171	rs182636083	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.3	CAD	rs182636083-C	0.484685	7E-32		0.0272119	[0.023-0.032] unit increase	Affymetrix [NR] (imputed)	N
794	chr2	27454344	27454345	rs138025761	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	2p23.3		rs138025761-?	NR	3E-10		0.573166	[0.37-0.78] unit increase	NR [9800000] (imputed)	N
794	chr2	27455331	27455332	rs375233070	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	2p23.3		rs375233070-?	NR	4E-10		0.849206	[0.59-1.11] unit increase	NR [9800000] (imputed)	N
794	chr2	27455331	27455332	rs375233070	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	2p23.3		rs375233070-?	NR	3E-8		0.688385	[0.45-0.93] unit increase	NR [9800000] (imputed)	N
794	chr2	27455725	27455726	rs13399758	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs13399758-T	NR	3E-28		0.085	unit increase	Affymetrix [at least 7091467] (imputed)	N
794	chr2	27455725	27455726	rs13399758	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs13399758-T	0.94	6E-22	(EA)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
794	chr2	27455725	27455726	rs13399758	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs13399758-T	0.924	6E-8	(Hispanic)	0.138	unit increase	Affymetrix [at least 7091467] (imputed)	N
794	chr2	27455725	27455726	rs13399758	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs13399758-T	NR	6E-7		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
794	chr2	27462650	27462651	rs61741874	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs61741874-T	0.939029	5E-9		0.0244848	[0.016-0.033] unit increase	NR [NR]	N
794	chr2	27470530	27470531	rs75252677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs75252677-A	NR	1E-15		0.063	[0.048-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr2	27471024	27471025	rs1561535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	SLC30A3	rs1561535-?	NR	9E-6	(LPC 14:0)	0.16225165	[0.091-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
794	chr2	27486594	27486595	rs6759518	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs6759518-?	NR	8E-10				Affymetrix [NR]	N
794	chr2	27486594	27486595	rs6759518	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs6759518-?	NR	5E-7				Affymetrix [NR]	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	4E-11		0.0259	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	7E-31		0.0452	[0.038-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	9E-13		0.0294	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	2E-9		0.0236	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	2E-15		0.0311	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr2	27491110	27491111	rs11682713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs11682713-C	NR	2E-16		0.0322	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
794	chr2	27516289	27516290	rs74564095	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs74564095-T	NR	9E-25		0.085	[0.069-0.101] unit increase	Affymetrix [9000000] (imputed)	N
794	chr2	27516289	27516290	rs74564095	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs74564095-T	NR	8E-10		0.0509	[0.035-0.067] unit increase	Affymetrix [9000000] (imputed)	N
794	chr2	27521106	27521107	rs114605943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs114605943-G	0.0277484	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
794	chr2	27521166	27521167	rs139537302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p23.3	TRIM54	rs139537302-G	0.029303	8E-10		0.040370714	[0.027-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
795	chr2	27526462	27526463	rs116708757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs116708757-C	NR	4E-9		0.0439	[0.029-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	3E-9		0.0451	[0.03-0.06] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	4E-18		0.0657	[0.051-0.081] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	3E-11		0.0503	[0.035-0.065] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	3E-13		0.0582	[0.043-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	3E-9		0.0472	[0.032-0.063] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	4E-9		0.0447	[0.03-0.06] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27539200	27539201	rs76898938	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs76898938-A	NR	1E-9		0.0462	[0.031-0.061] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27547246	27547247	rs76164683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs76164683-C	NR	1E-12		0.0633	[0.046-0.081] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27547246	27547247	rs76164683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs76164683-C	NR	3E-11		0.0592	[0.042-0.077] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27568870	27568871	rs10205592	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2p23.3	GTF3C2	rs10205592-C	0.56	1E-7		0.075	[0.048-0.102] unit decrease	Illumina [32241096] (imputed)	N
795	chr2	27574425	27574426	rs73921512	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs73921512-?	NR	1E-9		0.03339	[0.023-0.044] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	2E-26		0.0645	[0.053-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	2E-10		0.0385	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	4E-12		0.0441	[0.032-0.057] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	1E-15		0.051	[0.038-0.064] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	2E-10		0.0384	[0.026-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	1E-9		0.0369	[0.025-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27579171	27579172	rs73921514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs73921514-C	NR	3E-15		0.0478	[0.036-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27584665	27584666	rs7586601	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	GTF3C2	rs7586601-?	NR	7E-7	(lactate)	0.18250819	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
795	chr2	27584665	27584666	rs7586601	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	GTF3C2	rs7586601-?	NR	2E-6	(alpha hydroxybutyric acid)	0.17502604	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
795	chr2	27587723	27587724	rs1058065	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p23.3	NR	rs1058065-G	0.97552739311682	4E-6	(IGP56)	0.54	[0.31-0.77] unit increase	Illumina [~ 2500000] (imputed)	N
795	chr2	27590665	27590666	rs41288829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs41288829-T	NR	6E-24		0.0757	[0.061-0.09] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	1E-37		0.0328	[0.028-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	3E-103		0.0552	[0.05-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	2E-36		0.0323	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	7E-13		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	1E-40		0.0359	[0.031-0.041] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	3E-19		0.024	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	9E-20		0.0233	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	2E-37		0.0342	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	1E-25		0.0268	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	4E-35		0.0318	[0.027-0.037] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	4E-11		0.0173	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	2E-40		0.0341	[0.029-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	8E-23		0.0263	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	5E-55		0.0401	[0.035-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	2E-16		0.022	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	6E-33		0.0307	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27591803	27591804	rs80051818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p23.3	NR	rs80051818-C	NR	3E-12		0.0187	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	5E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	7E-18		0.0455	[0.035-0.056] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	6E-13		0.038	[0.028-0.048] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	7E-10		0.0342	[0.023-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	1E-9		0.032	[0.022-0.042] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	2E-9		0.0332	[0.022-0.044] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	4E-12		0.0368	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	6E-10		0.0327	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	5E-11		0.0346	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	5E-12		0.0365	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	6E-11		0.0347	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27594396	27594397	rs76476582	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs76476582-T	NR	9E-10		0.0324	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	2p23.3		rs4665972-T	0.39541	5E-8		0.0230046	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
795	chr2	27598096	27598097	rs4665972	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRP1	5,346 Icelandic ancestry individuals	NA	2p23.3		rs4665972-T	0.3544	4E-14		0.133093	[0.099-0.168] unit decrease	Illumina [7506463] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total fatty acids	4,348 individuals	NA	2p23.3		rs4665972-C	0.625138986	4E-10		0.145015	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial saturated fatty acids	4,348 individuals	NA	2p23.3		rs4665972-C	0.62459925	8E-9		0.133824	[0.089-0.179] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial monounsaturated fatty acids (16:1, 18:1)	4,348 individuals	NA	2p23.3		rs4665972-C	0.624571228	4E-10		0.14444	[0.099-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial glycoprotein acetyls (mainly a1-acid glycoprotein)	4,348 individuals	NA	2p23.3		rs4665972-C	0.625123045	2E-11		0.154103	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial docosahexaenoic acid (22:6)	4,348 individuals	NA	2p23.3		rs4665972-C	0.625112097	6E-9		0.134396	[0.089-0.18] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium HDL	4,734 individuals	NA	2p23.3		rs4665972-C	0.624812421	3E-9		0.12983	[0.087-0.173] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total fatty acids	4,734 individuals	NA	2p23.3		rs4665972-C	0.625062526	2E-8		0.124032	[0.081-0.167] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting omega-3 fatty acids	4,734 individuals	NA	2p23.3		rs4665972-C	0.625015876	3E-9		0.130557	[0.088-0.174] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting monounsaturated fatty acids (16:1, 18:1)	4,734 individuals	NA	2p23.3		rs4665972-C	0.625441239	6E-11		0.144354	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glycoprotein acetyls (mainly a1-acid glycoprotein)	4,734 individuals	NA	2p23.3		rs4665972-C	0.625089795	7E-13		0.157347	[0.11-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting docosahexaenoic acid (22:6)	4,734 individuals	NA	2p23.3		rs4665972-C	0.624797498	1E-8		0.125613	[0.083-0.169] mmol/l decrease	Illumina [7701709] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p23.3		rs4665972-C	NR	3E-11		0.0137	[0.0098-0.0176] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2p23.3		rs4665972-T	0.395	1E-27				Affymetrix [10369434] (imputed)	N
795	chr2	27598096	27598097	rs4665972	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p23.3	SNX17	rs4665972-T	0.4	8E-8	(EA)	0.26	[0.16-0.36] unit increase	Illumina [up to 13042663] (imputed)	N
795	chr2	27598096	27598097	rs4665972	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	SNX17	rs4665972-?		6E-9		0.0469	[0.031-0.063] unit decrease	Illumina [31500000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	2p23.3	SNX17	rs4665972-?	NR	8E-6		4.466	NR unit increase	Illumina [up to 1520000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2p23.3	SNX17	rs4665972-C	0.67	2E-7		0.078	[0.049-0.107] unit decrease	Illumina [32241096] (imputed)	N
795	chr2	27598096	27598097	rs4665972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-T	0.395414	1E-526		0.100204	[0.096-0.104] unit increase	Affymetrix [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p23.3	NR	rs4665972-C	0.606698	4E-434		0.0368708	[0.035-0.039] unit increase	Affymetrix [16582909] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs4665972-C	0.605726	5E-19		0.0624518	[0.049-0.076] unit increase	Affymetrix [17914406] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2p23.3	SNX17	rs4665972-T	0.394	5E-14	(EA)	0.016	[0.012-0.02] unit increase	NR [12082474] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2p23.3	SNX17	rs4665972-T	NR	1E-18		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-T	0.3953	6E-17		0.0173726	[0.013-0.021] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	2p23.3	SNX17	rs4665972-T	NR	2E-10		1.0459232	[1.03-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs4665972-?	NR	8E-47		0.0687275	[0.059-0.078] unit decrease	Illumina [31978265] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p23.3	NR	rs4665972-?	NR	2E-22		3.9092	[3.12-4.69] unit decrease	Illumina [32003504] (imputed)	N
795	chr2	27598096	27598097	rs4665972	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p23.3	NR	rs4665972-?	NR	5E-8		1.952401	[1.25-2.65] unit decrease	Illumina [31808917] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary sodium to potassium ratio	217,996 European ancestry individuals	108,942 European ancestry individuals	2p23.3	SNX17	rs4665972-C	0.6082	1E-17		0.026	[0.020-0.032] unit decrease	Affymetrix [19420026] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	2p23.3	SNX17	rs4665972-C	0.6071	4E-8		0.016	[0.01-0.022] unit decrease	Affymetrix [19420026] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	9E-29	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	7E-75	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	5E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	4E-200				Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	1E-237	(EA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	9E-29	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	9E-203				Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	4E-75	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	2E-247	(EA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	1E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	9E-58	(Asian)	0.052	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	6E-9	(AA)	0.058	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	3E-146	(EA)	0.069	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	1E-221		0.062	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	1E-21	(Hispanic)	0.066	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	2E-72	(EA)	0.066	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	2E-138		0.059	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	1E-54	(Asian)	0.054	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	1E-15	(Hispanic)	0.068	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.3	SNX17	rs4665972-C	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	8E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.3	SNX17	rs4665972-C	NR	6E-18				Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	8E-8		0.859	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.3	SNX17	rs4665972-C	NR	2E-6	(EA)	0.907	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2p23.3	SNX17	rs4665972-T	0.392	8E-10		0.01104	[0.0075-0.0146] unit increase	Affymetrix [11709857] (imputed)	N
795	chr2	27598096	27598097	rs4665972	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-T	0.393	7E-12		0.01176	[0.0084-0.0151] unit increase	Affymetrix [11709857] (imputed)	N
795	chr2	27598096	27598097	rs4665972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-C	0.6051	2E-26		0.03923603	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-C	0.6051	4E-20		0.03395389	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p23.3	SNX17	rs4665972-C	0.6051	1E-18		0.03246703	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
795	chr2	27598096	27598097	rs4665972	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	2p23.3	GCKR	rs4665972-T	0.123	1E-8	(AA)	0.065	[NR] unit increase	Affymetrix [NR]	N
795	chr2	27598096	27598097	rs4665972	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2p23.3	SLC4A1AP, GCKR	rs4665972-T	0.448	1E-6		0.08	[0.047-0.113] cup size increase	Illumina [7422970] (imputed)	N
795	chr2	27605696	27605696	rs35551468	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	2p23.3	PPM1G	rs35551468-GT	0.39112899	1E-25		0.0368347	[0.033-0.041] unit decrease	Affymetrix [9463307] (imputed)	N
795	chr2	27611453	27611454	rs114439706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs114439706-T	NR	4E-22		0.0761	[0.061-0.092] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27611453	27611454	rs114439706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs114439706-T	NR	4E-16		0.0675	[0.051-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27611453	27611454	rs114439706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs114439706-T	NR	2E-11		0.0531	[0.038-0.069] unit increase	Affymetrix [9000000] (imputed)	N
795	chr2	27612839	27612840	rs1647280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs1647280-G	NR	9E-16		0.0566	[0.043-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
795	chr2	27633645	27633646	rs113022464	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	2p23.3	PPM1G, NRBP1	rs113022464-G	0.43	5E-6		0.218	[0.12-0.31] unit increase	Illumina [6379332] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	2E-10		0.0847949	[0.059-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	4E-11		0.0849554	[0.06-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	9E-11		0.0853184	[0.059-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	8E-13		0.0906726	[0.066-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	2E-12		0.0903438	[0.065-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	4E-10		0.0826523	[0.057-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1728918-A	NR	5E-11		0.0842862	[0.059-0.109] unit decrease	Affymetrix [87696910] (imputed)	N
795	chr2	27635462	27635463	rs1728918	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.3	NR	rs1728918-A	0.2404	3E-10	(GCKR)	0.004327	NR unit decrease	Illumina [1671387] (imputed)	N
795	chr2	27635462	27635463	rs1728918	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	2p23.3	intergenic	rs1728918-A	0.27651	6E-6		0.158047	[0.089-0.227] unit decrease	Affymetrix [9463307] (imputed)	N
795	chr2	27635462	27635463	rs1728918	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	2p23.3	intergenic	rs1728918-A	0.27651	1E-12		0.00593061	[0.0043-0.0076] unit decrease	Affymetrix [9463307] (imputed)	N
795	chr2	27635462	27635463	rs1728918	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	2p23.3	PPM1G, NRBP1	rs1728918-G	0.78291	2E-12		0.052956	[0.039-0.066] unit increase	Illumina [24961484] (imputed)	N
795	chr2	27635462	27635463	rs1728918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.3		rs1728918-?	NR	1E-8				NR [~ 8900000] (imputed)	N
795	chr2	27635462	27635463	rs1728918	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs1728918-?	NR	1E-31				Affymetrix [NR]	N
795	chr2	27635462	27635463	rs1728918	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs1728918-?	NR	5E-35				Affymetrix [NR]	N
795	chr2	27635462	27635463	rs1728918	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2p23.3	UCN	rs1728918-A	0.299	5E-16		1.123	[1.086-1.16]	Affymetrix, Illumina [1230000] (imputed)	N
795	chr2	27635462	27635463	rs1728918	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p23.3	intergenic	rs1728918-?	NR	2E-16	(mannose)	0.04006	[NR] unit decrease	Affymetrix [655658]	N
795	chr2	27637758	27637759	rs78484886	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs78484886-?	NR	2E-9		0.03553	[0.023-0.048] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
795	chr2	27642733	27642734	rs11675428	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	2p23.3	PPM1G, NRBP1	rs11675428-?	NR	8E-6		1.8518518	[NR]	Illumina [up to 547389]	N
795	chr2	27646277	27646278	rs149217485	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	2p23.3	NR	rs149217485-?	NR	2E-10	(conditional on round 2)	0.08893541	[0.062-0.116] unit increase novel	Illumina [6108953] (imputed)	N
795	chr2	27648725	27648726	rs4665978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p23.3		rs4665978-?	NR	1E-15				NR [~ 8900000] (imputed)	N
796	chr2	27656822	27656822	rs3214499	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs3214499-A	NR	2E-10		0.0730155	[0.051-0.095] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27657680	27657681	rs77005271	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs77005271-T	NR	5E-14		0.0306	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27674931	27674934	rs151269177	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Total cholesterol levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p23.3	IFT172	rs151269177-A	0.298	8E-9		3.9639	[2.62-5.31] unit decrease	Affymetrix [at least 805769] (imputed)	N
796	chr2	27685387	27685388	rs780110	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780110-A	NR	2E-10		0.0727253	[0.05-0.095] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27685387	27685388	rs780110	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780110-A	NR	4E-10		0.0722425	[0.05-0.095] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27686910	27686911	rs6747190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs6747190-C	NR	4E-9		0.032	[0.021-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27711892	27711893	rs1260327	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	2p23.3		rs1260327-?	NR	2E-8		0.00509708	[0.0033-0.0069] unit increase	NR [NR]	N
796	chr2	27712828	27712829	rs149117895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs149117895-A	NR	7E-13		0.0918	[0.067-0.117] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27715415	27715416	rs2303369	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	2p23.3	FNDC4	rs2303369-T	0.388	2E-12		0.175	[0.13-0.22] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
796	chr2	27716003	27716004	rs780088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2p23.3		rs780088-?	NR	6E-21				NR [~ 8900000] (imputed)	N
796	chr2	27716493	27716494	rs704795	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	2p23.3	BRE, GTF3C2, EIFB4	rs704795-A	0.4	2E-15		0.16	[0.12-0.2] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
796	chr2	27726414	27726415	rs149847328	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	2p23.3	GCKR	rs149847328-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
796	chr2	27730366	27730367	rs185580150	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.3	NR	rs185580150-?	NR	6E-10				Illumina [7760689] (imputed)	N
796	chr2	27730366	27730367	rs185580150	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.3	NR	rs185580150-?	NR	3E-8				Illumina [7760689] (imputed)	N
796	chr2	27730366	27730367	rs185580150	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	GCKR	rs185580150-G	0.999	3E-6	(AA)	0.347	unit increase	Illumina [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396021	4E-36		0.051522	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-49		0.0622716	[0.054-0.071] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-119		0.0926233	[0.085-0.1] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p23.3		rs1260326-T	0.39619	5E-70		0.0722331	[0.064-0.08] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396025	4E-135		0.0979442	[0.09-0.106] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-66		0.0700247	[0.062-0.078] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-97		0.0849433	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-74		0.0730859	[0.065-0.081] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-75		0.0728815	[0.065-0.081] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-54		0.0639998	[0.056-0.072] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-62		0.0670472	[0.059-0.075] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-58		0.065774	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-72		0.0714624	[0.064-0.079] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-82		0.0777125	[0.07-0.086] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-134		0.100959	[0.093-0.109] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-120		0.0937141	[0.086-0.102] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-75		0.0753301	[0.067-0.083] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-148		0.105493	[0.098-0.113] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-145		0.104733	[0.097-0.113] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-151		0.106758	[0.099-0.115] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-121		0.0957627	[0.088-0.104] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-153		0.108602	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-120		0.096479	[0.088-0.105] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-109		0.0900044	[0.082-0.098] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-128		0.0995963	[0.092-0.108] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-48		0.0585941	[0.051-0.066] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-80		0.0769642	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-124		0.0958623	[0.088-0.104] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-140		0.104037	[0.096-0.112] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-115		0.0939772	[0.086-0.102] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-123		0.0975113	[0.089-0.106] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-134		0.100041	[0.092-0.108] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-59		0.0649234	[0.057-0.073] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-28		0.0457394	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-111		0.0908106	[0.083-0.099] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-44		0.0531173	[0.046-0.061] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-99		0.0878763	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-32		0.0500381	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-140		0.106016	[0.098-0.114] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-74		0.0764126	[0.068-0.085] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-47		0.0610287	[0.053-0.069] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-32		0.0461811	[0.039-0.054] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-72		0.0744082	[0.066-0.083] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-106		0.0891439	[0.081-0.097] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-19		0.0372393	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-12		0.0256137	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-93		0.0830804	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-102		0.0885351	[0.08-0.097] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-27		0.0458029	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-10		0.024187	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-23		0.040846	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	1E-142		0.105845	[0.098-0.114] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-16		0.0331689	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-47		0.0573987	[0.05-0.065] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396024	2E-36		0.0514666	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	9E-60		0.0645994	[0.057-0.072] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-21		0.0398589	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-18		0.0355706	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	3E-15		0.031068	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-144		0.106394	[0.098-0.115] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	7E-85		0.0763245	[0.069-0.084] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	3E-40		0.0553075	[0.047-0.063] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-110		0.0904386	[0.082-0.098] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	4E-117		0.0928958	[0.085-0.101] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	4E-162		0.109743	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	3E-60		0.066446	[0.058-0.074] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-21		0.03861	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-105		0.0880817	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-89		0.0815217	[0.074-0.089] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395951	6E-19		0.0376021	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	1E-78		0.0769268	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-9		0.0250599	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396025	1E-47		0.056206	[0.049-0.064] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-70		0.0709788	[0.063-0.079] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-87		0.0835214	[0.075-0.092] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-39		0.0528421	[0.045-0.061] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-47		0.060574	[0.052-0.069] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-18		0.0351748	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396021	1E-51		0.0618646	[0.054-0.07] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-46		0.0603469	[0.052-0.069] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-53		0.0626845	[0.055-0.071] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396639	4E-16		0.0344321	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-31		0.04814	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-100		0.0864923	[0.079-0.094] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	7E-48		0.055096	[0.048-0.063] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-61		0.0693681	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-135		0.103413	[0.095-0.112] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-49		0.0619596	[0.054-0.07] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-39		0.0553573	[0.047-0.064] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-42		0.0535293	[0.046-0.061] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-108		0.0895839	[0.082-0.098] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-103		0.0871684	[0.079-0.095] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-87		0.0822049	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-20		0.0385077	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	7E-16		0.030729	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	7E-78		0.0744097	[0.067-0.082] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	2E-61		0.0652765	[0.058-0.073] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	1E-55		0.064724	[0.057-0.073] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	8E-94		0.0830756	[0.075-0.091] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	3E-157		0.111017	[0.1-0.12] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	8E-38		0.0532357	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396023	7E-32		0.0475855	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396016	3E-12		0.0294942	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-22		0.0405143	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396019	2E-29		0.0467023	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-130		0.101134	[0.093-0.109] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395949	4E-78		0.0789422	[0.071-0.087] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-49		0.0619232	[0.054-0.07] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p23.3		rs1260326-T	0.39619	6E-81		0.0778523	[0.07-0.086] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-72		0.0719562	[0.064-0.08] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-94		0.0837481	[0.076-0.092] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-59		0.0650849	[0.057-0.073] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-114		0.0913448	[0.083-0.099] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-122		0.0939994	[0.086-0.102] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-42		0.0535059	[0.046-0.061] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396639	4E-13		0.0305836	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-38		0.054334	[0.046-0.063] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-96		0.0848325	[0.077-0.093] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-76		0.0725692	[0.065-0.08] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-33		0.050513	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-123		0.0976834	[0.09-0.106] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-33		0.0505425	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-17		0.0328273	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-105		0.0886548	[0.081-0.097] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-18		0.0320993	[0.025-0.039] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-104		0.0879509	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-73		0.0758241	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	7E-33		0.0478469	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	2p23.3		rs1260326-T	0.395992	5E-23		0.0395183	[0.032-0.047] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-25		0.0429408	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	7E-114		0.0917567	[0.084-0.1] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-23		0.0378791	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-100		0.0879906	[0.08-0.096] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-30		0.0483744	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-106		0.0924126	[0.084-0.101] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-54		0.0651475	[0.057-0.073] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-34		0.0514519	[0.043-0.06] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-24		0.0390425	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-111		0.0910186	[0.083-0.099] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-12		0.0256281	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-100		0.0860614	[0.078-0.094] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-74		0.0760654	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-41		0.0535299	[0.046-0.061] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-106		0.0865383	[0.079-0.094] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p23.3		rs1260326-T	0.39619	1E-76		0.0747131	[0.067-0.083] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-44		0.0577308	[0.05-0.066] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-74		0.0770359	[0.069-0.085] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-34		0.0504016	[0.042-0.058] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-91		0.0800727	[0.072-0.088] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-61		0.0694059	[0.061-0.078] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-53		0.062678	[0.055-0.071] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396021	4E-62		0.0671407	[0.059-0.075] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-36		0.0528011	[0.045-0.061] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	7E-74		0.0729622	[0.065-0.081] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-35		0.0508185	[0.043-0.059] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-74		0.0758474	[0.068-0.084] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-47		0.0546903	[0.047-0.062] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-48		0.0613229	[0.053-0.07] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-44		0.0589652	[0.051-0.067] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-71		0.0757393	[0.067-0.084] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	6E-55		0.0659301	[0.058-0.074] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-9		0.0234449	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-68		0.0725852	[0.064-0.081] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-21		0.0399934	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-27		0.0405179	[0.033-0.048] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-106		0.0890692	[0.081-0.097] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-32		0.0501775	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-32		0.049884	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-105		0.086527	[0.079-0.094] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p23.3		rs1260326-T	0.39619	4E-82		0.0773756	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-62		0.0680451	[0.06-0.076] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-38		0.0535061	[0.045-0.062] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-84		0.0769926	[0.069-0.085] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-8		0.0230705	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-44		0.0562519	[0.048-0.064] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396021	8E-37		0.0522503	[0.044-0.06] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-21		0.0389029	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-81		0.0757245	[0.068-0.083] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	9E-51		0.0614012	[0.053-0.069] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-87		0.081656	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-54		0.059043	[0.052-0.067] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-43		0.0579202	[0.05-0.066] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-28		0.0464557	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	1E-89		0.0847072	[0.076-0.093] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	8E-41		0.0565467	[0.048-0.065] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	5E-11		0.0255238	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-88		0.0820347	[0.074-0.09] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-14		0.031895	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-25		0.0385761	[0.031-0.046] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-107		0.0893474	[0.081-0.097] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	3E-100		0.083605	[0.076-0.091] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-21		0.0387976	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	4E-24		0.0378301	[0.031-0.045] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	2E-24		0.0394151	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396027	5E-26		0.0442801	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396018	7E-41		0.0559618	[0.048-0.064] unit increase	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	2p23.3		rs1260326-T	0.396028	6E-13		0.0305693	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	2p23.3		rs1260326-T	0.4074	4E-21		0.0981	[0.078-0.118] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	2p23.3		rs1260326-T	0.3448	2E-6		0.0592	[0.035-0.084] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	2p23.3		rs1260326-T	0.35	3E-28		0.0782	[0.064-0.092] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	2p23.3		rs1260326-T	0.3479	8E-28		0.076	[0.062-0.09] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	2p23.3		rs1260326-T	0.4103	2E-16		0.085	[0.065-0.105] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	16,018 Hispanic or Latin American individuals	NA	2p23.3		rs1260326-T	0.3419	3E-14		0.0843	[0.063-0.106] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	2p23.3	GCKR	rs1260326-T	NR	6E-6		0.0755	[0.043-0.108] unit increase	NR [6787908] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	4E-48		0.0289	[0.025-0.033] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	4E-22		0.0161	[0.013-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	6E-17		0.0965	[0.074-0.119] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2p23.3		rs1260326-C	0.443371184	4E-13		0.10490457	[0.077-0.133] unit decrease	Illumina [13429980] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	6E-29		0.071	[0.058-0.084] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	3E-515		0.0992	[0.095-0.103] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.442588	7E-102		0.0863985	[0.078-0.094] unit decrease	Illumina [13471903] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	1E-98		0.0417	[0.038-0.046] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	2E-136		0.0445	[0.041-0.048] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.441833	4E-19		0.0314887	[0.025-0.038] unit decrease	Illumina [13475706] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	9E-85		0.0414	[0.037-0.046] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.44179	2E-25		0.0393828	[0.032-0.047] unit decrease	Illumina [13477433] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	1E-97		0.0342	[0.031-0.037] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	2E-99		0.043	[0.039-0.047] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	2E-168		0.058	[0.054-0.062] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.442009	8E-49		0.0556682	[0.048-0.063] unit decrease	Illumina [13474682] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	1E-95		0.04	[0.036-0.044] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.442485	8E-26		0.0350207	[0.028-0.042] unit decrease	Illumina [13478928] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.439605	2E-8		0.0262021	[0.017-0.035] unit decrease	Illumina [13467171] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	6E-50		0.032	[0.028-0.036] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p23.3		rs1260326-C	0.441796019	2E-9		0.059331838	[0.04-0.079] unit increase	Illumina [13134967] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	8E-19		0.0673	[0.052-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	1E-39		0.0642	[0.055-0.074] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p23.3		rs1260326-C	0.441796019	6E-16		0.075442664	[0.057-0.094] unit decrease	Illumina [13429980] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	4E-24		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	7E-34		0.0157	[0.013-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.441455	9E-15		0.0155541	[0.012-0.019] unit increase	Illumina [13479295] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	8E-70		0.0362	[0.032-0.04] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.441604	2E-19		0.031105	[0.024-0.038] unit increase	Illumina [13476509] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	2E-191		0.0561	[0.052-0.06] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.443484	4E-57		0.0556103	[0.049-0.062] unit decrease	Illumina [13476165] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	1E-22		0.0819	[0.065-0.098] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p23.3		rs1260326-C	NR	2E-8		0.0772	[0.05-0.104] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	0.441092	3E-15		0.0374873	[0.028-0.047] unit decrease	Illumina [13468899] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	1E-95		0.0464	[0.042-0.051] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p23.3		rs1260326-C	NR	4E-26		0.0204	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	2p23.3		rs1260326-C	0.392	3E-15		0.87	[0.84-0.91]	Affymetrix [9723654] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-10		0.0944626	[0.065-0.124] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-10		0.0944012	[0.065-0.124] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	1E-11		0.101962	[0.073-0.131] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-12		0.106515	[0.077-0.136] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:2_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-10		0.0969913	[0.067-0.127] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-10		0.0770633	[0.053-0.101] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	4E-10		0.0706021	[0.049-0.093] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	6E-18		0.105691	[0.082-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	6E-18		0.102523	[0.079-0.126] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-14		0.091337	[0.068-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	2p23.3		rs1260326-C	NR	1E-26		0.0666	[0.054-0.079] unit increase	Illumina [6720657] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(33:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	2p23.3		rs1260326-T	NR	1E-26		0.0725	[0.059-0.086] unit decrease	Illumina [6720657] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylethanolamine_34:1_[M-H]1- levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	1E-11		0.0710223	[0.05-0.092] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:3_[M+H]1+/Phosphatidylcholine-P_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-14		0.0907773	[0.067-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	8E-15		0.0941884	[0.07-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	9E-14		0.0916487	[0.068-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	5E-13		0.0896551	[0.065-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-22		0.113226	[0.09-0.136] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-17		0.102962	[0.079-0.127] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	7E-17		0.0987751	[0.076-0.122] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-14		0.0856885	[0.064-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	8E-15		0.0947563	[0.071-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	1E-13		0.0814369	[0.06-0.103] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	6E-18		0.102061	[0.079-0.125] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	3E-13		0.0795827	[0.058-0.101] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	1E-10		0.0687245	[0.048-0.09] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-10		0.0690224	[0.048-0.09] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260326-T	NR	2E-13		0.0853598	[0.063-0.108] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p23.3		rs1260326-T	0.395	4E-43				Affymetrix [10369434] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2p23.3		rs1260326-T	0.395	2E-28				Affymetrix [10369434] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2p23.3		rs1260326-T	0.395	2E-17				Affymetrix [10369434] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	2p23.3	NR	rs1260326-T	0.39	1E-25		1.13	NR	NR [8853336] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	5E-19		0.0636	NR L decrease	Affymetrix [9390170] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p23.3	GCKR	rs1260326-T	0.4	1E-7	(EA)	0.25	[0.15-0.35] unit increase	Illumina [up to 13042663] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3957	6E-12		0.0486	[0.033-0.064] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	2p23.3	GCKR	rs1260326-T	0.3402	9E-6		0.0297	[0.017-0.043] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3928	8E-38		0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.2392	3E-10		0.0847	[0.058-0.111] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3872	4E-65		0.0282	[0.025-0.032] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
796	chr2	27730939	27730940	rs1260326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	2p23.3	GCKR	rs1260326-T	0.3371	1E-11		0.0403	[0.03-0.051] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.395393	2E-162		0.014005	[0.013-0.015] unit increase	Affymetrix [13995440] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.395387	1E-155		0.00614907	[0.0057-0.0066] unit increase	Affymetrix [13995440] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	2p23.3		rs1260326-C	0.424	2E-11		0.92		Affymetrix [15679186] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.6051	4E-87		0.004453	[0.004-0.0049] unit decrease	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	2p23.3	GCKR	rs1260326-?	NR	1E-11		0.073	[0.051-0.095] unit decrease	NR [7682250] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	2p23.3	GCKR	rs1260326-T	0.41	5E-12		1.14	[1.10-1.18]	Affymetrix [710030]	N
796	chr2	27730939	27730940	rs1260326	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	2p23.3	GCKR	rs1260326-T	0.39	3E-31		1.26	[1.21-1.31]	Affymetrix [710030]	N
796	chr2	27730939	27730940	rs1260326	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	2p23.3		rs1260326-T	NR	3E-23		9.347	mg/dl increase	NR [5712318]	N
796	chr2	27730939	27730940	rs1260326	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	2p23.3	NR	rs1260326-C	0.589	6E-7			NR	Illumina [7289516] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	2p23.3	NR	rs1260326-C	0.589	1E-7		0.742	[0.66-0.83]	Illumina [7289516] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33619548	Oldoni F	2021-02-23	J Clin Endocrinol Metab	Genetic and Metabolic Determinants of Plasma Levels of ANGPTL8.	Plasma ANGPTL8 levels	1,779 African American individuals, 1,022 European ancestry individuals, 589 Hispanic or Latin American individuals, 67 individuals	NA	2p23.3		rs1260326-T	NR	4E-7		0.18	unit increase	NR [346167]	N
796	chr2	27730939	27730940	rs1260326	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.5895	2E-262				Affymetrix, Illumina [2331072] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and LDL-C (pairwise)	495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.5895	5E-9				Affymetrix, Illumina [2331072] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p23.3	GCKR	rs1260326-T	0.39	1E-79		18.9	z-score increase	Affymetrix [4311822] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.368	1E-12		0.025	[0.018-0.032] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	2p23.3		rs1260326-?	NR	3E-8		0.4913817	[0.32-0.66] ml/min/1.73 m2 decrease	NR [43622178]	N
796	chr2	27730939	27730940	rs1260326	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.39	1E-167		0.0513	[0.048-0.055] unit increase	NR [NR]	N
796	chr2	27730939	27730940	rs1260326	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?		2E-133		0.0917	[0.084-0.099] unit decrease	Illumina [31500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?		2E-25		0.0366	[0.03-0.043] unit decrease	Illumina [31500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?		2E-44		0.0561	[0.048-0.064] unit decrease	Illumina [31500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?		2E-20		0.0413	[0.033-0.05] unit decrease	Illumina [31500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	2p23.3	GCKR, AC005077.12	rs1260326-T	0.391852	4E-22		0.02297	[0.018-0.028] unit decrease	Affymetrix [19400838] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3955	6E-64		0.0323	[0.029-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	2p23.3	GCKR	rs1260326-T	0.396	4E-37		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	2p23.3	GCKR	rs1260326-T	0.396	5E-29		0.03	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Follistatin levels	21,758 European ancestry individuals	9,173 individuals	2p23.3		rs1260326-T	0.4	3E-55		0.1401	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Chitinase-3-like protein 1 levels	21,758 European ancestry individuals	9,173 individuals	2p23.3		rs1260326-T	0.39	6E-17		0.0673	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cathepsin D levels	21,758 European ancestry individuals	9,173 individuals	2p23.3		rs1260326-T	0.39	2E-13		0.0598	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p23.3	GCKR	rs1260326-T	0.339531	8E-13	(threonine)	0.174	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p23.3	GCKR	rs1260326-T	0.339531	5E-16	(gamma-glutamylthreonine)	0.194	[0.15-0.24] unit decrease	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p23.3	GCKR	rs1260326-T	0.339531	5E-11	(alanine)	0.159	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p23.3	GCKR	rs1260326-T	0.339531	4E-89	(mannose)	0.484	[0.44-0.53] unit decrease	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.339531	8E-13	(threonine)	0.174	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.339531	5E-16	(gamma-glutamylthreonine)	0.194	[0.15-0.24] unit decrease	Illumina [13039987] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2p23.3	GCKR	rs1260326-C	0.624	3E-15		0.05	[0.038-0.062] unit increase	Illumina [232237]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2p23.3	GCKR	rs1260326-C	0.624	2E-10		0.057	[0.039-0.075] unit increase	Illumina [92057]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		2p23.3	GCKR	rs1260326-C	0.607	4E-13		0.048	[0.034-0.062] unit increase	Illumina [204609]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		2p23.3	GCKR	rs1260326-C	0.607	2E-8		0.053	[0.035-0.071] unit increase	Illumina [54056]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2p23.3	GCKR	rs1260326-C	0.624	6E-13		0.059	[0.043-0.075] unit increase	Illumina [227473]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2p23.3	GCKR	rs1260326-C	0.624	4E-9		0.068	[0.044-0.092] unit increase	Illumina [86054]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		2p23.3	GCKR	rs1260326-C	0.606	9E-11		0.057	[0.039-0.075] unit increase	Illumina [193169]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		2p23.3	GCKR	rs1260326-C	0.606	7E-7		0.062	[0.037-0.087] unit increase	Illumina [49530]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		2p23.3	GCKR	rs1260326-C	0.624	8E-6		0.043	[0.023-0.063] unit increase	Illumina [220721]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2p23.3	GCKR	rs1260326-C	0.624	5E-8		0.035	[0.023-0.047] unit increase	Illumina [232255]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2p23.3	GCKR	rs1260326-C	0.624	2E-7		0.046	[0.028-0.064] unit increase	Illumina [92082]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		2p23.3	GCKR	rs1260326-C	0.607	2E-6		0.032	[0.018-0.046] unit increase	Illumina [204641]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2p23.3	GCKR	rs1260326-C	0.624	4E-7		0.059	[0.035-0.083] unit increase	Illumina [86076]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2p23.3	GCKR	rs1260326-C	0.624	2E-7		0.043	[0.027-0.059] unit increase	Illumina [227495]	N
796	chr2	27730939	27730940	rs1260326	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		2p23.3	GCKR	rs1260326-C	0.606	6E-6		0.04	[0.022-0.058] unit increase	Illumina [193201]	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605529	6E-52		0.034130413	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605469	2E-61		0.03778806	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605475	7E-48		0.033250246	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605449	3E-31		0.026309544	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.60514	2E-60		0.03774126	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605168	2E-71		0.041072395	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605525	4E-18		0.019570084	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605551	1E-57		0.0363056	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.60558	3E-77		0.04200302	[0.038-0.046] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605401	3E-36		0.028584257	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605381	7E-33		0.02733463	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605205	5E-13		0.016506068	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605461	3E-23		0.022390792	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.60543	5E-62		0.037775226	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.605432	6E-53		0.034849964	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p23.3	GCKR	rs1260326-C	0.60548	1E-11		0.016021622	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.575362	4E-78				Affymetrix, Illumina [24649327] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.601256	1E-68		0.032863	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.391091	2E-34				Affymetrix, Illumina [22063850] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.575648	3E-118				Affymetrix, Illumina [24588908] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.600973	1E-98		0.039291	[0.036-0.043] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.556325	1E-22		0.036668	[0.029-0.044] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.588603	2E-62				Affymetrix, Illumina [23114412] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.602032	7E-62		0.032512	[0.029-0.036] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.395676	5E-15		0.015312	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.586366	3E-41				Affymetrix, Illumina [23472807] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.602112	1E-35		0.02397	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32556615	Liu Y	2020-06-18	Diabetologia	Metabolomic and genetic associations with insulin resistance in pregnancy.	Gestational insulin sensitivity	1,126 Afro-Caribbean individuals, 1,380 European ancestry individuals, 830 Mexican-American individuals, 1,192 Thai ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	NR	5E-12		0.20038068	[0.14-0.26] unit decrease	Illumina [6168240] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p23.3	NR	rs1260326-C	0.5946	3E-42		0.0638	[0.055-0.073] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p23.3	NR	rs1260326-C	0.5805	2E-57		0.0625	[0.055-0.07] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2p23.3		rs1260326-C	0.437337429	9E-20		1.0786191	[1.061192016-1.096332338]	Illumina [8919992] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2p23.3	GCKR	rs1260326-C	0.456	1E-21		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.5967	2E-42		0.028574824	[0.024-0.033] unit increase	Affymetrix [10613246] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.4033	1E-20		9.296	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.595	1E-45		0.024939064	[0.021-0.028] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	2p23.3	GCKR	rs1260326-?	NR	4E-7		1.302	[1.176-1.442]	Illumina [7412560] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fat content (MRI proton density fat fraction measure)	14,440 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.39117	4E-8		0.046	[0.028-0.064] unit increase	Affymetrix [~ 12000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p23.3		rs1260326-?	NR	2E-21		0.0197194	[0.016-0.024] unit decrease	NR [6912294] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p23.3		rs1260326-T	0.393435	4E-28		0.022	[0.018-0.026] unit decrease	NR [7250403] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	2p23.3	GCKR	rs1260326-T	0.545	1E-8		1.37	[1.23-1.53]	Illumina [7206774] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	2p23.3	GCKR	rs1260326-T	0.545	2E-13		1.3	[1.21-1.39]	Illumina [7206774] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p23.3	SNX17, GCKR	rs1260326-?		5E-10				Affymetrix, Illumina [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.395558	6E-60		0.0347351	[0.031-0.039] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.395476	3E-121		0.0495629	[0.045-0.054] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.395328	4E-38		0.025843	[0.022-0.03] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	2E-375		0.1035	[0.099-0.108] unit increase	Affymetrix [5701386] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	4E-99		0.0548	[0.05-0.059] unit increase	Affymetrix [5701386] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Non-oily fish consumption	335,576 European ancestry individuals	NA	2p23.3	EIF2B4, SNX17, ZNF513, PPM1G, GCKR	rs1260326-?	NR	9E-9		0.0143394	[0.0095-0.0192] unit increase	Affymetrix [25921788] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.605726	4E-103		0.0281178	[0.026-0.031] unit increase	Affymetrix [16578495] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p23.3	NR	rs1260326-C	0.606511	5E-39		0.036635	[0.031-0.042] unit increase	Affymetrix [16580851] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p23.3	NR	rs1260326-C	0.6048169999999999	3E-91		0.06159	[0.056-0.068] unit increase	Affymetrix [16577313] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p23.3	NR	rs1260326-C	0.607415	2E-188		0.0351659	[0.033-0.038] unit increase	Affymetrix [16585854] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p23.3	NR	rs1260326-C	0.605695	1E-298		0.0411304	[0.039-0.043] unit increase	Affymetrix [16582621] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p23.3	NR	rs1260326-C	0.607415	3E-134		0.0343345	[0.032-0.037] unit increase	Affymetrix [16585866] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p23.3	NR	rs1260326-C	0.605695	3E-219		0.0380831	[0.036-0.041] unit increase	Affymetrix [16582614] (imputed)	N
796	chr2	27730939	27730940	rs1260326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	2p23.3	NR	rs1260326-C	0.605566	1E-10		0.00556675	[0.0039-0.0073] unit increase	Affymetrix [16582268] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31998841	Thompson A	2020-01-15	Sci Adv	Functional validity, role, and implications of heavy alcohol consumption genetic loci.	Alcohol consumption (heavy vs. light/non-drinkers)	21,967 British ancestry cases, 103,282 British ancestry controls	47,967 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.612	1E-13		7.391	NR z score increase	Affymetrix [11141077] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	2p23.3	GCKR	rs1260326-T		1E-46		0.073	[0.063-0.083] mg/dl increase	NR [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	1E-16		0.096	[0.074-0.118] unit increase	Illumina [6108828] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Alcohol consumption (drinkers vs non-drinkers)	83,713 Japanese ancestry ever drinkers, 81,371 Japanese ancestry never drinkers	NA	2p23.3	GCKR	rs1260326-?	NR	2E-13		0.011	[0.0081-0.0139] unit increase	Illumina [6108828] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.392838	2E-283		0.0745916	[0.071-0.079] unit increase	NR [NR]	N
796	chr2	27730939	27730940	rs1260326	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.61	2E-8		0.033	NR cups per day increase	NR [NR]	N
796	chr2	27730939	27730940	rs1260326	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs1260326-C	0.605242	2E-13		0.0720571	[0.053-0.092] unit increase	Affymetrix [21375087] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs1260326-C	0.605637	1E-18		0.0615595	[0.048-0.075] unit increase	Affymetrix [17914406] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs1260326-?	NR	3E-100		0.04459	[0.04-0.049] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2p23.3	GCKR	rs1260326-?	NR	5E-116		0.04586	[0.042-0.05] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.341	5E-11		0.03	[0.02-0.04] unit increase	Illumina [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Triglyceride levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p23.3	GCKR	rs1260326-?	NR	3E-7	(TransMeta)			Illumina [3153931] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	8E-20	(Ala)	0.105504915	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	8E-11	(VLDL_D)	0.079594925	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	8E-11	(Gp)	0.07117757	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	6E-10	(L_HDL_PL)	0.04480671	NR unit decrease	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-14	(XS_VLDL_TG)	0.078515455	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-14	(VLDL_TG)	0.08611423	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-13	(M_VLDL_TG)	0.08879713	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-13	(MUFA)	0.0800872	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-12	(TotFA)	0.068720095	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	3E-15	(S_VLDL_TG)	0.08934505	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	3E-14	(Serum_TG)	0.091140695	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-13	(XL_VLDL_TG)	0.078505106	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-12	(L_VLDL_P)	0.07405403	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-10	(Leu)	0.049552824	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-9	(VLDL_C)	0.05097968	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-12	(L_VLDL_TG)	0.077943616	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-11	(M_VLDL_PL)	0.07566091	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-11	(L_VLDL_PL)	0.07906318	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-10	(S_VLDL_L)	0.071902275	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	9E-13	(M_VLDL_TG)	0.089100525	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	9E-12	(L_VLDL_PL)	0.08515495	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	7E-7	(S_VLDL_L)	0.07296435	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	7E-19	(Ala)	0.10920316	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	7E-12	(L_VLDL_P)	0.08549069	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	6E-13	(Serum_TG)	0.09012033	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-13	(S_VLDL_TG)	0.09025589	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	5E-12	(L_VLDL_TG)	0.08626581	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	4E-12	(XL_VLDL_TG)	0.086691655	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	3E-6	(Leu)	0.05836895	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	3E-10	(MUFA)	0.0786342	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-9	(XS_VLDL_TG)	0.0759521	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-13	(VLDL_TG)	0.091697775	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	2E-11	(VLDL_D)	0.08317139	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-8	(Gp)	0.071229525	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-7	(TotFA)	0.06593476	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs1260326-?	NR	1E-11	(M_VLDL_PL)	0.08497287	NR unit increase	Illumina [609262]	N
796	chr2	27730939	27730940	rs1260326	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.392938	7E-16		0.0536971	[0.041-0.067] unit increase	Affymetrix [9463307] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	GCKR	rs1260326-T	0.5568	1E-19	(East Asian)	0.0526	[0.041-0.064] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	GCKR	rs1260326-T	0.4359	3E-95		0.066	[0.06-0.072] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	GCKR	rs1260326-T	0.1435	9E-7	(AA)	0.089	[0.054-0.124] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3983	5E-69		0.069602	[0.062-0.077] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p23.3	NR	rs1260326-T	0.5555	4E-27	(women)	0.0496	[0.041-0.059] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p23.3	NR	rs1260326-T	0.5435	1E-51	(men)	0.0765	[0.067-0.086] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	2p23.3	GCKR	rs1260326-?	NR	4E-41	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.3	GCKR	rs1260326-?	NR	2E-16		0.02332736	[0.018-0.029] unit increase	Illumina [27896057] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p23.3	GCKR	rs1260326-T	0.391	4E-17		0.449	[0.35-0.55] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p23.3	GCKR	rs1260326-T	0.422	1E-34		0.0045	[0.0039-0.0051] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p23.3	GCKR	rs1260326-T	0.3906	3E-36	(EA)	0.0046	[0.0038-0.0054] unit increase	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2p23.3	GCKR	rs1260326-T	0.395664	1E-20	(EA)	0.0117743	[0.0093-0.0142] unit increase	Affymetrix [~ 8800000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3939	2E-60		0.0173	[0.015-0.019] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	2p23.3	NR	rs1260326-?	NR	4E-7		0.01382172	[0.0085-0.0192] unit decrease	Illumina [30613845] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs1260326-?	NR	6E-62		0.07522435	[0.066-0.084] unit decrease	Illumina [31978265] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p23.3	NR	rs1260326-?	NR	1E-23		3.845262	[3.09-4.6] unit decrease	Illumina [32003504] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p23.3	NR	rs1260326-?	NR	8E-8		1.847823	[1.17-2.52] unit decrease	Illumina [31808917] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	2p23.3	NR	rs1260326-?	NR	1E-15		0.07841215	[0.059-0.098] unit increase	Illumina [29713514] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	2p23.3	NR	rs1260326-?	NR	3E-27		0.09749534	[0.08-0.115] unit decrease	Illumina [30861016] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.6047	1E-19		0.0136	[0.011-0.017] unit increase	Affymetrix [~ 7740000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.6058	1E-11		0.0111	[0.008-0.0142] unit increase	Affymetrix [~ 7740000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.6034	2E-35		0.0128	[0.011-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	6E-13				NR [NR]	N
796	chr2	27730939	27730940	rs1260326	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p23.3	GCKR	rs1260326-T	0.395882	1E-25		0.059920058	[0.049-0.071] unit increase	Affymetrix [7288503] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.5589	8E-19	(Japanese)	0.0357	[0.028-0.044] unit increase	Illumina [1986983] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.4	3E-45	(EA)	0.055	[0.047-0.063] unit increase	Illumina [1986983] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.559	8E-19	(Japanese)	0.036	[0.028-0.044] unit increase	Illumina [5864938] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	2p23.3	GCKR	rs1260326-T	0.556	5E-11		1.1	[NR]	Illumina [6603247] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	2p23.3	GCKR	rs1260326-C	0.652	2E-16		8.22	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	2p23.3	GCKR	rs1260326-C	0.591	2E-16	(EA)	0.04477	[0.034-0.055] unit increase	Affymetrix [up to 12500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	2p23.3	GCKR	rs1260326-C	0.651	2E-13		7.33	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	2p23.3	GCKR	rs1260326-C	0.591	1E-16	(EA)	1.0749	[1.06-1.09]	Affymetrix [up to 12500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	2p23.3		rs1260326-T	0.3666	1E-84		0.0482	[0.043-0.053] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	2p23.3		rs1260326-T	0.4069	2E-8	(EA)	1.045	[0.68-1.41] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30911093	Bandesh K	2019-03-25	J Hum Genet	Genome-wide association study of blood lipids in Indians confirms universality of established variants.	Triglyceride levels	1,036 Indian ancestry individuals	4,235 Indian ancestry individuals, 188,577 European ancestry individuals, 7,898 East Asian, South Asian and African ancestry individuals	2p23.3	GCKR	rs1260326-?	NR	1E-6	(Indian)			Illumina [551825]	N
796	chr2	27730939	27730940	rs1260326	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary sodium to creatinine ratio	218,450 European ancestry individuals	109,166 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.6082	2E-21		0.029	[0.023-0.035] unit decrease	Affymetrix [19420026] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.608	5E-40		0.0321	[0.027-0.037] unit increase	Illumina [~ 250000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	2p23.3	NR	rs1260326-T	0.3642	3E-259				Affymetrix, Illumina [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.3929	1E-52		0.034923363	[0.03-0.039] unit decrease	Affymetrix [11514936] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.601	3E-44		0.0187927	[0.016-0.021] unit increase	NR [~ 9732723] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p23.3	NR	rs1260326-C	0.601	8E-45		0.020889835	[0.018-0.024] unit increase	NR [~ 10000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA	2p23.3	GCKR	rs1260326-T	0.42	8E-34		0.024	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	2E-28	(EA)	0.025	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	2p23.3	GCKR	rs1260326-T	0.39	2E-30		0.024	[0.02-0.028] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p23.3	GCKR	rs1260326-C	0.534	2E-35		0.675	[0.49-0.86] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.3		rs1260326-?	NR	4E-59				NR [~ 8900000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2p23.3		rs1260326-?	NR	1E-15				NR [~ 8900000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p23.3		rs1260326-?	NR	1E-25				NR [~ 8900000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.3		rs1260326-?	NR	1E-36				NR [~ 8900000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs1260326-?	NR	4E-22		0.21751	[0.17-0.26] unit increase	Affymetrix [7794483] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs1260326-?	NR	2E-13	(female)	0.1816	[0.13-0.23] unit increase	Affymetrix [7794483] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p23.3	NR	rs1260326-?	NR	1E-12	(male)	0.25305	[0.18-0.32] unit increase	Affymetrix [7794483] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	2p23.3	GCKR	rs1260326-?		2E-16		1.0752687	[1.06-1.1]	Affymetrix, Illumina [43000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2p23.3	GCKR	rs1260326-T	NR	8E-23	(men)	0.052	[NR] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2p23.3	GCKR	rs1260326-T	NR	2E-78	(women)	0.09	[NR] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2p23.3	GCKR	rs1260326-T	0.39	3E-92		0.073	[0.065-0.081] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.4	9E-86	(BMI-adjusted)	0.077	[0.069-0.085] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	2p23.3	SNX17, GCKR	rs1260326-T	NR	9E-13		7.15	[NR] z score decrease	NR [16213998]	N
796	chr2	27730939	27730940	rs1260326	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (consumption score)	121,604 British ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	NR	6E-9		0.007	[0.005-0.009] unit increase	NR [16213998]	N
796	chr2	27730939	27730940	rs1260326	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p23.3	GCKR	rs1260326-C	0.6069	7E-25		1.07	[1.06-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p23.3	GCKR	rs1260326-T	0.379	1E-300		0.1118	[0.11-0.12] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p23.3	GCKR	rs1260326-T	0.3798	3E-160		0.0748	[0.069-0.08] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p23.3	NR	rs1260326-T	NR	5E-6		0.012	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	2p23.3	GCKR	rs1260326-A	0.2964	9E-15		0.0865	[0.065-0.108] unit increase	Illumina [~ 200000]	N
796	chr2	27730939	27730940	rs1260326	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Percent glycated albumin	7,647 European ancestry individuals, 2,104 Black individuals	1,304 European ancestry individuals, 608 Black individuals	2p23.3	GCKR	rs1260326-T	0.41	2E-8	(EA)	0.01	[0.0061-0.0139] unit decrease	Affymetrix [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.397939	1E-10		0.422407	[0.29-0.55] unit increase	Affymetrix [~ 7800000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p23.3	GCKR	rs1260326-C	0.617	1E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [247470]	N
796	chr2	27730939	27730940	rs1260326	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p23.3	GCKR	rs1260326-C	0.63	3E-18		1.06	[1.04-1.07]	Affymetrix, Illumina [247470]	N
796	chr2	27730939	27730940	rs1260326	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p23.3	GCKR	rs1260326-C	0.617	1E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [247470]	N
796	chr2	27730939	27730940	rs1260326	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p23.3	GCKR	rs1260326-C	0.63	5E-25		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	NR	1E-300		0.147	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.478	1E-23	(East Asian)	0.145	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.422	2E-272	(EA)	0.147	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.368	1E-26	(Hispanic)	0.15	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	NR	3E-70		0.075	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.478	1E-7	(East Asian)	0.084	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.422	2E-56	(EA)	0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.368	5E-10	(Hispanic)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	NR	7E-10		0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs1260326-T	0.422	3E-8	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	2E-9		0.0256	[0.017-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	2E-94		0.08881	[0.08-0.097] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	3E-19		0.03525	[0.028-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	3E-16		0.03472	[0.026-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	4E-21		0.03993	[0.032-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	1E-40		0.05949	[0.051-0.068] unit decrease	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	6E-22		0.04103	[0.033-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	4E-17		0.03167	[0.024-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	1E-48		0.06015	[0.052-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	2E-16		0.03854	[0.029-0.048] unit increase novel	Illumina [6108953] (imputed)	N
796	chr2	27730939	27730940	rs1260326	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	2p23.3	GCKR	rs1260326-T	0.57	1E-9		1.38	[1.25-1.53]	Illumina [93606]	N
796	chr2	27730939	27730940	rs1260326	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-G	0.38	7E-24		0.03	[0.024-0.036] unit decrease	Affymetrix [12489781] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	2p23.3	GCKR	rs1260326-T	0.39	1E-21		0.028	[0.022-0.034] unit decrease	Affymetrix [12489781] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2p23.3	GCKR	rs1260326-T	0.44	2E-18		0.14	unit increase	Illumina [5270624] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	2p23.3	GCKR	rs1260326-T	0.413	4E-253	(Trans-ethnic initial)	0.115	[0.11-0.12] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	1E-16	(EA)	0.07	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2p23.3	SNX17, ZNF513, KRTCAP3, FNDC4, PPM1G, IFT172, GCKR, NRBP1	rs1260326-?		1E-7				Illumina [9725440] (imputed)	N
796	chr2	27730939	27730940	rs1260326	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2p23.3	SNX17, ZNF513, KRTCAP3, FNDC4, PPM1G, IFT172, GCKR, NRBP1	rs1260326-?		6E-11				Illumina [9560910] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal overload gout	560 Japanese ancestry cases, 1,213 Japanese ancestry controls	618 Japanese ancestry cases, 1,268 Japanese ancestry controls	2p23.3	GCKR	rs1260326-T	0.535	5E-9		1.35	[1.22-1.49]	Illumina [570442]	N
796	chr2	27730939	27730940	rs1260326	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	2p23.3	GCKR	rs1260326-T	0.535	7E-11	(Japanese)	1.31	[1.21-1.42]	Illumina [570442]	N
796	chr2	27730939	27730940	rs1260326	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Valine)	16,596 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	NR	9E-7		0.05	[0.024-0.076] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Leucine)	16,596 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	NR	2E-7		0.049	[0.023-0.075] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27898682	Lotta LA	2016-11-29	PLoS Med	Genetic Predisposition to an Impaired Metabolism of the Branched-Chain Amino Acids and Risk of Type 2 Diabetes: A Mendelian Randomisation Analysis.	Branched-chain amino acid levels (Isoleucine)	16,596 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	1E-9		0.06	[0.036-0.084] unit increase	Affymetrix, Illumina [10500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	9E-21		0.03410984	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	2E-18		0.03202804	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	5E-19		0.03251663	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6052	9E-12		0.02456709	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6049	1E-21		0.03560478	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.605	2E-25		0.03860428	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	1E-19		0.03308063	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	5E-15		0.0286908	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6052	2E-12		0.02574395	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6052	4E-22		0.03532376	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6053	8E-10		0.02209369	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.6052	7E-18		0.03150785	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2p23.3	GCKR	rs1260326-C	0.39	4E-16		0.2746	[0.21-0.34] unit decrease	Affymetrix [19941912] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27702941	Cornelis MC	2016-10-03	Hum Mol Genet	Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior.	Caffeine metabolism (plasma 1,7-dimethylxanthine (paraxanthine) to 1,3,7-trimethylxanthine (caffeine) ratio)	5,323 European ancestry individuals	824 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.38	3E-6		4.69	Z-score decrease	Illumina [~ 31000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2p23.3	GCKR	rs1260326-C	NR	6E-14		0.872	[0.65-1.1] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2p23.3	GCKR	rs1260326-C	0.6	2E-7	(EA)	0.83	[0.52-1.14] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	2p23.3	GCKR	rs1260326-T	NR	4E-151				NR [25015711] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	2p23.3	GCKR	rs1260326-T	NR	3E-63				NR [2501549] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	2p23.3	GCKR	rs1260326-C	0.59	8E-8	(EA)	1.12	[1.09-1.15]	Affymetrix, Illumina [at least 2305318] (imputed)	N
796	chr2	27730939	27730940	rs1260326	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.64	7E-26	(Alanine)	0.1	[0.08-0.12] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p23.3	GCKR	rs1260326-?	NR	2E-23	(subset analysis)			Illumina [130052]	N
796	chr2	27730939	27730940	rs1260326	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	2p23.3	GCKR	rs1260326-T	NR	2E-12		0.0065	[0.0047-0.0083] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2p23.3	GCKR	rs1260326-T	0.42	3E-14	(EA)	0.0068	[0.005-0.0086] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.491	7E-24		0.127	[0.1-0.15] unit decrease	Illumina [286795]	N
796	chr2	27730939	27730940	rs1260326	26433129	Tin A	2015-10-03	Diabet Med	GCKR and PPP1R3B identified as genome-wide significant loci for plasma lactate: the Atherosclerosis Risk in Communities (ARIC) study.	Plasma lactate levels	6,901 European ancestry individuals	1,671 African American individuals	2p23.3	GCKR	rs1260326-T	0.41	4E-52		0.08	[NR] unit increase	Affymetrix [~ 38000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26433129	Tin A	2015-10-03	Diabet Med	GCKR and PPP1R3B identified as genome-wide significant loci for plasma lactate: the Atherosclerosis Risk in Communities (ARIC) study.	Plasma lactate levels	6,901 European ancestry individuals	1,671 African American individuals	2p23.3	GCKR	rs1260326-T	0.41	2E-47	(EA)	0.08	[0.068-0.092] unit increase	Affymetrix [~ 38000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.3	NR	rs1260326-A	0.4059	1E-14	(EA)	1.080162	[1.06-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	26174136	Setoh K	2015-07-15	Nat Commun	Three missense variants of metabolic syndrome-related genes are associated with alpha-1 antitrypsin levels.	Serum alpha1-antitrypsin levels	3,294 Japanese ancestry individuals	6,065 Japanese ancestry individuals	2p23.3	GCKR	rs1260326-C	0.432	3E-16		2.05	[1.56-2.54] mg dl-1 increase	Illumina [6569727] (imputed)	N
796	chr2	27730939	27730940	rs1260326	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.36	5E-88		0.123	[0.11-0.13] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
796	chr2	27730939	27730940	rs1260326	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.36	3E-13		0.045	[0.033-0.057] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
796	chr2	27730939	27730940	rs1260326	25898920	Korostishevsky M	2015-04-22	Eur J Hum Genet	Genomics and metabolomics of muscular mass in a community-based sample of UK females.	Blood metabolite levels	3,953 European ancestry individuals	NA	2p23.3	NR	rs1260326-?	NR	6E-56	(Mannose levels)			Illumina [2300000]	N
796	chr2	27730939	27730940	rs1260326	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	2p23.3	GCKR	rs1260326-C	0.58	8E-7		0.055	[0.033-0.077] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
796	chr2	27730939	27730940	rs1260326	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	2p23.3	GCKR	rs1260326-C	0.58	6E-6	(men)	0.065	[0.038-0.092] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
796	chr2	27730939	27730940	rs1260326	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	2p23.3	GCKR	rs1260326-T	0.55	2E-12		1.36	[1.25-1.48]	Illumina [570442]	N
796	chr2	27730939	27730940	rs1260326	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA	2p23.3	GCKR	rs1260326-T	NR	8E-11		0.023	[0.015-0.031] unit decrease	Illumina [106489]	N
796	chr2	27730939	27730940	rs1260326	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	2p23.3	GCKR	rs1260326-T	NR	5E-18		0.031	[0.023-0.039] unit decrease	Illumina [106489]	N
796	chr2	27730939	27730940	rs1260326	25288136	Cornelis MC	2014-10-07	Mol Psychiatry	Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption.	Coffee consumption (cups per day)	91,462 European ancestry individuals	30,062 European ancestry individuals, 7,964 African American individuals	2p23.3	GCKR, FNDC4	rs1260326-T	0.41	7E-8		0.04	[0.020-0.060] unit decrease	Affymetrix, Illumina [2373958] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.41	3E-148	(glucose/mannose)	0.041	[0.037-0.045] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	6E-14	(alanine)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	1E-77	(mannose)	0.044	[0.04-0.048] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	White blood cell count	24,814 European ancestry individuals	6,526 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.43	9E-8		0.005	[0.003-0.007] unit increase	Illumina [183585]	N
796	chr2	27730939	27730940	rs1260326	24386095	Zhou L	2013-12-30	PLoS One	A genome wide association study identifies common variants associated with lipid levels in the Chinese population.	Lipid traits	3,451 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2p23.3	GCKR	rs1260326-T	0.44	3E-7	(TG)	0.07	mmol/L increase	Affymetrix, Illumina [up to 2249917] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.39	2E-239		0.115	[NR] mg/dL increase	NR [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.39	3E-42		0.051	[NR] unit increase	NR [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2p23.3	GCKR	rs1260326-T	0.409	6E-13	(FPG)	0.0044	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2p23.3	GCKR	rs1260326-T	0.409	6E-11	(FCP)	0.0116	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	9E-7	(TAG 46:2)	0.16491295	[0.099-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	9E-7	(PC 32:1)	0.16496815	[0.099-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	8E-12	(alanine)	0.23077767	[0.16-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	7E-8	(PC 34:4)	0.180729	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	7E-8	(LPC 20:3)	0.17947723	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	6E-6	(PC 34:1)	0.15190773	[0.086-0.218] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	6E-6	(LPE 20:4)	0.15362816	[0.087-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	5E-8	(TAG 48:3)	0.18267855	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	5E-6	(DAG 36:2)	0.15429989	[0.088-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	4E-8	(PC 32:2)	0.1850016	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	4E-7	(TAG 46:1)	0.16869353	[0.1-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-9	(TAG 50:4)	0.19759764	[0.13-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-8	(TAG 50:3)	0.1853844	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-8	(PC 34:3)	0.18466824	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-7	(TAG 52:5)	0.17035955	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-6	(TAG 52:6)	0.15454282	[0.089-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-6	(TAG 52:2)	0.15770823	[0.092-0.224] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-6	(LPE 18:2)	0.15675637	[0.091-0.222] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	3E-11	(lactate)	0.24086063	[0.17-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	2E-8	(TAG 48:2)	0.1859652	[0.12-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	2E-7	(TAG 50:5)	0.17034519	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	2E-7	(TAG 50:2)	0.17565545	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	2E-6	(LPC 16:1)	0.15930784	[0.094-0.225] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	2E-6	(LPC 14:0)	0.16124451	[0.095-0.227] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	1E-9	(alpha hydroxybutyric acid)	0.21938264	[0.15-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	1E-7	(TAG 52:1)	0.17764857	[0.11-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	FNDC4	rs1260326-?	NR	1E-6	(TAG 48:1)	0.16283728	[0.097-0.229] unit increase	Affymetrix [at least 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23505323	Weissglas-Volkov D	2013-03-15	J Med Genet	Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.	Hypertriglyceridemia	1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls	1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls	2p23.3	ZNF512, KRTCAP3, FNDC4, IFT172, GCKR, PPM1G, NRBP1, C2orf16	rs1260326-?	0.26	2E-13		1.41	[1.31-1.51]	Illumina [1361436] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.41	1E-44		0.074	[0.063-0.084] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23118302	Chu AY	2012-11-01	Circ Cardiovasc Genet	Genome-wide association study evaluating lipoprotein-associated phospholipase A2 mass and activity at baseline and after rosuvastatin therapy.	Lipoprotein-associated phospholipase A2 activity and mass	6,851 European ancestry individuals	13,664 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.44	5E-6	(mass)	0.0053	[-0.00215-0.01275] ng/ml decrease	Illumina [796174]	N
796	chr2	27730939	27730940	rs1260326	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	2p23.3	FNDC4, GCKR	rs1260326-T	0.56	4E-6	(Japanese)	0.031	[0.017-0.045] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum total protein level	Up to 25,539 European ancestry individuals, 10,168 Japanese ancestry individuals	NA	2p23.3	FNDC4, GCKR	rs1260326-T	0.44	6E-8		0.0179	[0.011-0.024] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	2p23.3	GCKR-FNDC4	rs1260326-T	0.41	4E-19		0.0138	[0.011-0.017] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	2p23.3	FNDC4, GCKR	rs1260326-T	0.56	2E-8	(Japanese)	0.027	[0.017-0.037] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	23022100	Franceschini N	2012-09-26	Am J Hum Genet	Discovery and fine mapping of serum protein loci through transethnic meta-analysis.	Serum albumin levels	Up to 53,190 European ancestry individuals, 9,380 Japanese ancestry individuals	NA	2p23.3	FNDC4, GCKR	rs1260326-T	0.41	3E-14	(EA)	0.0124	[0.0093-0.0155] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	0.36	1E-12				Illumina [~ 2000000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	22558069	Osman W	2012-04-27	PLoS One	Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.	Non-albumin protein levels	Up to 9,103 Japanese ancestry individuals	Up to 1,629 Japanese ancestry individuals	2p23.3	GCKR	rs1260326-C	0.445	3E-9	(ALB)	0.08	[0.053-0.107] unit decrease	Illumina [2178644] (imputed)	N
796	chr2	27730939	27730940	rs1260326	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-?	NR	3E-18	(Ala, Gln)	0.15	[0.11-0.19] unit decrease	Illumina [~ 7700000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	2p23.3	GCKR	rs1260326-T	NR	9E-10		2.334	[1.59-3.08] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs1260326-T	0.38	4E-13		3.2	[2.40-4.0] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.40	2E-8	(TRIG)	0.082	[0.053-0.111] mmol/l increase	Illumina [NR] (imputed)	N
796	chr2	27730939	27730940	rs1260326	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	2p23.3	GCKR	rs1260326-T	NR	5E-40		0.072	[0.06-0.08] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	6E-133		8.76	[7.98-9.54] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p23.3	GCKR	rs1260326-T	0.41	7E-27		1.91	[1.54-2.28] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	20657596	Johansen CT	2010-07-25	Nat Genet	Excess of rare variants in genes identified by genome-wide association study of hypertriglyceridemia.	Hypertriglyceridemia	463 European ancestry cases, 1,197 European ancestry controls	NA	2p23.3	GCKR	rs1260326-T	0.41	7E-9		1.75	[1.45-2.12]	Affymetrix [~ 2100000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p23.3	FNDC4, IFT172, GCKR	rs1260326-T	0.41	3E-14	(eGFRcrea)	0.01	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Triglycerides	8,993 Japanese ancestry individuals	NA	2p23.3	GCKR	rs1260326-C	0.45	1E-11		0.101	[0.072-0.13] unit decrease	Illumina [561583]	N
796	chr2	27730939	27730940	rs1260326	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	2p23.3	GCKR	rs1260326-C	0.44	4E-9	(ALB)	0.085	[0.056-0.114] unit decrease	Illumina [561583]	N
796	chr2	27730939	27730940	rs1260326	20081857	Saxena R	2010-01-17	Nat Genet	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	2p23.3	GCKR	rs1260326-T	NR	3E-10		0.07	[0.05-0.09] mmol/L increase	Affymetrix, Illumina [NR]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	4E-32	(TG.assay, fasting)	0.075	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	4E-24	(VLDL.large, fasting)	0.362	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	3E-35	(TG.by.NMR, whole)	0.052	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	3E-29	(TG.by.NMR, fasting)	0.056	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	3E-28	(VLDL.large, whole)	0.342	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p23.3	GCKR	rs1260326-?	NR	1E-37	(TG.assay, whole)	0.07	[NR] unit increase	Illumina [335603]	N
796	chr2	27730939	27730940	rs1260326	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	2p23.3	GCKR	rs1260326-A	0.35	4E-10	(TG)	0.09	[0.06-0.12] mmol/l increase	Illumina [329091]	N
796	chr2	27730939	27730940	rs1260326	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p23.3	GCKR	rs1260326-T	0.45	2E-31		0.12	[0.08-0.16] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
796	chr2	27730939	27730940	rs1260326	18454146	Chambers JC	2008-05-04	Nat Genet	Common genetic variation near MC4R is associated with waist circumference and insulin resistance.	Waist circumference and related phenotypes	2,684 Indian Asian ancestry male individuals	7,394 Indian Asian ancestry individuals, 4,561 European ancestry individuals	2p23.3	GCKR	rs1260326-?	NR	4E-8	(triglycerides)			Illumina [308067]	N
796	chr2	27731211	27731212	rs3817588	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	2p23.3		rs3817588-T	0.8146	5E-23		0.0313	[0.025-0.038] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
796	chr2	27731211	27731212	rs3817588	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Triglycerides	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	2p23.3	GCKR	rs3817588-C	0.309	3E-7	(Filipino)	0.202	unit decrease	Affymetrix, Illumina [up to 12553142] (imputed)	N
796	chr2	27731211	27731212	rs3817588	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	2p23.3	GCKR	rs3817588-T	NR	6E-12				NR [2501749] (imputed)	N
796	chr2	27731740	27731740	rs57634090	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p23.3	GCKR	rs57634090-CTT	0.323	4E-10		0.0565	[0.039-0.074] unit decrease	Affymetrix [at least 805769] (imputed)	N
796	chr2	27734971	27734972	rs6547692	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2p23.3	GCKR	rs6547692-G	0.44	4E-24		10.1	z-score increase	Affymetrix [4314223] (imputed)	N
796	chr2	27734971	27734972	rs6547692	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	2p23.3	GCKR	rs6547692-A	0.46	1E-8		0.9	[0.87-0.94]	Affymetrix [7975321]	N
796	chr2	27734971	27734972	rs6547692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2p23.3	GCKR	rs6547692-G	0.55476	5E-10		0.0163349	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27734971	27734972	rs6547692	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2p23.3	NR	rs6547692-G	0.5585	1E-15		0.0697	[0.053-0.087] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
796	chr2	27734971	27734972	rs6547692	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2p23.3	GCKR	rs6547692-A	0.44	4E-15		1.07	1.05-1.09	Illumina [12557761] (imputed)	N
796	chr2	27734971	27734972	rs6547692	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lactate dehydrogenase levels	126,319 Japanese ancestry individuals	NA	2p23.3	GCKR	rs6547692-?	NR	4E-10		0.02508	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
796	chr2	27734971	27734972	rs6547692	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	2p23.3	GCKR	rs6547692-?	NR	8E-10		0.02467	[0.017-0.033] unit increase	Illumina [6108953] (imputed)	N
796	chr2	27735032	27735033	rs141428740	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs141428740-?	NR	7E-12		0.05042	[0.036-0.065] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
796	chr2	27739880	27739881	rs10549495	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	2p23.3		rs10549495-C	0.427923026	5E-12		0.8770732	[0.845079478-0.910278191]	Illumina [8919992] (imputed)	N
796	chr2	27741071	27741072	rs780096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p23.3		rs780096-G	NR	1E-28		0.0214	[0.018-0.025] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
796	chr2	27741071	27741072	rs780096	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p23.3	GCKR	rs780096-C	0.4406	5E-8		0.0311	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
796	chr2	27741104	27741105	rs780095	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	2p23.3	GCKR	rs780095-G	0.4267	8E-9	(Non diabetics)	0.070907116	[0.047-0.095] mmol/L increase	Illumina [24111857] (imputed)	N
796	chr2	27741236	27741237	rs780094	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	2p23.3		rs780094-T	0.384884	3E-16		0.0346741	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium HDL	4,348 individuals	NA	2p23.3		rs780094-C	0.645498045	2E-9		0.135303	[0.091-0.18] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645224244	3E-9		0.128588	[0.086-0.171] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in small HDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645453102	9E-9		0.124533	[0.082-0.167] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in medium VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645343552	9E-10		0.132835	[0.09-0.175] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides in VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.6455376	5E-10		0.13496	[0.093-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in medium VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645343552	4E-9		0.127244	[0.085-0.17] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in medium VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645343552	6E-9		0.126045	[0.084-0.168] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting medium VLDL particle concentration	4,734 individuals	NA	2p23.3		rs780094-C	0.645343552	3E-9		0.128214	[0.086-0.171] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in medium VLDL	4,734 individuals	NA	2p23.3		rs780094-C	0.645343552	2E-9		0.129298	[0.087-0.172] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	1E-10		0.0965587	[0.067-0.126] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	4E-11		0.0997421	[0.07-0.129] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	2E-15		0.0972802	[0.073-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	1E-15		0.0947062	[0.072-0.118] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	4E-13		0.0863815	[0.063-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	2p23.3		rs780094-A	NR	4E-10		0.079	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:3_[M+H]1+/Phosphatidylcholine-P_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	3E-12		0.0832563	[0.06-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	1E-12		0.0862255	[0.063-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	8E-12		0.0839115	[0.06-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	4E-11		0.0815594	[0.057-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	8E-20		0.105937	[0.083-0.129] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	1E-15		0.0966602	[0.073-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	6E-15		0.0919268	[0.069-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	7E-13		0.080646	[0.059-0.103] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	4E-13		0.0881897	[0.064-0.112] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	3E-12		0.0764453	[0.055-0.098] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	2E-15		0.0939527	[0.071-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	4E-11		0.0718979	[0.051-0.093] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780094-T	NR	2E-11		0.078238	[0.055-0.101] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27741236	27741237	rs780094	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p23.3	NR	rs780094-T	NR	1E-10		0.017	[0.011-0.023] mg/dl increase	Affymetrix [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2p23.3	GCKR	rs780094-C	0.52	2E-15		0.08	[0.06-0.1] unit increase	Affymetrix [774398] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-15		0.0199	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	8E-15		0.0194	[0.015-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	6E-25		0.0254	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	5E-111		0.055	[0.05-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	8E-404		0.1053	[0.1-0.11] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	7E-153		0.0646	[0.06-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-59		0.0419	[0.037-0.047] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	8E-175		0.0726	[0.068-0.078] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-58		0.0413	[0.036-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	4E-103		0.0529	[0.048-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	7E-115		0.0585	[0.053-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	2E-105		0.0536	[0.049-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	6E-136		0.061	[0.056-0.066] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	1E-28		0.0279	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-129		0.0593	[0.054-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	6E-70		0.0433	[0.039-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	2E-11		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	2E-18		0.0214	[0.017-0.026] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	8E-75		0.0449	[0.04-0.05] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	5E-78		0.048	[0.043-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	2E-196		0.0734	[0.068-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	4E-53		0.0394	[0.034-0.044] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	5E-16		0.0199	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-157		0.0657	[0.061-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	NR	3E-29		0.0289	[0.024-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	2p23.3	GCKR	rs780094-C	0.606271	1E-8		0.020869	[0.014-0.028] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	2p23.3	GCKR	rs780094-C	0.606271	2E-6		0.018173	[0.011-0.026] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	2p23.3	GCKR	rs780094-C	0.606271	7E-15		0.019402	[0.015-0.024] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	2p23.3	GCKR	rs780094-C	0.609904	3E-26		0.031277	[0.025-0.037] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	2p23.3	GCKR	rs780094-C	0.609904	4E-22		0.030446	[0.024-0.037] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	2p23.3	GCKR	rs780094-C	0.609904	1E-49		0.030764	[0.027-0.035] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
796	chr2	27741236	27741237	rs780094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p23.3	NR	rs780094-T	0.388003	8E-37		0.02445	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
796	chr2	27741236	27741237	rs780094	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs780094-C	0.594183	9E-10				Affymetrix, Illumina [23467995] (imputed)	N
796	chr2	27741236	27741237	rs780094	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	Triglyceride levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	2p23.3	GCKR	rs780094-T	0.334	6E-8		4.9	NR z score increase	Affymetrix [659492]	N
796	chr2	27741236	27741237	rs780094	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride levels	5,630 individuals	NA	2p23.3	GCKR	rs780094-C	0.64	1E-11		0.13	[0.093-0.167] unit decrease	Illumina [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Fasting triglyceride levels	5,630 individuals	NA	2p23.3	GCKR	rs780094-C	0.64	7E-11		0.13	[0.093-0.167] unit decrease	Illumina [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative protein intake	175,253 European ancestry individuals	93,179 European ancestry individuals	2p23.3	GCKR	rs780094-?		3E-10		0.019	[0.013-0.025] unit increase	Affymetrix [NR]	N
796	chr2	27741236	27741237	rs780094	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	2p23.3	GCKR	rs780094-?	NR	4E-8				NR [NR]	N
796	chr2	27741236	27741237	rs780094	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or fasting insulin levels	254,263 individuals	NA	2p23.3	GCKR	rs780094-?	NR	2E-9				NR [NR]	N
796	chr2	27741236	27741237	rs780094	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or HOMA-IR	254,263 individuals	NA	2p23.3	GCKR	rs780094-?	NR	9E-12				NR [NR]	N
796	chr2	27741236	27741237	rs780094	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	2p23.3		rs780094-T	NR	5E-10		0.00694921	[0.0047-0.0092] years increase	NR [7400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2p23.3		rs780094-T	NR	8E-10		0.020256106	[0.014-0.027] years increase	NR [7400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	2p23.3	GCKR	rs780094-C	0.4626	3E-15	(TG)	0.05656	NR unit decrease	Affymetrix [305158]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	7E-10	(XL_VLDL_FC)	0.07972465	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	6E-10	(XXL_VLDL_P)	0.07052754	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	4E-10	(L_VLDL_L)	0.07977565	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	3E-12	(S_VLDL_PL)	0.078627646	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	3E-10	(Remnant_C)	0.052253615	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	2E-12	(M_VLDL_P)	0.08573239	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	1E-16	(TG_PG)	0.07649861	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	9E-8	(XL_VLDL_FC)	0.07892771	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	8E-10	(L_VLDL_L)	0.09009911	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	6E-12	(M_VLDL_P)	0.085817285	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	5E-9	(XXL_VLDL_P)	0.0727644	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	4E-12	(TG_PG)	0.084896766	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780094-?	NR	2E-9	(S_VLDL_PL)	0.07551158	NR unit increase	Illumina [609262]	N
796	chr2	27741236	27741237	rs780094	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA	2p23.3		rs780094-T	0.42	4E-30		7.72	[6.39-9.05] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	2p23.3		rs780094-T	0.42	3E-14		2.32	[1.71-2.93] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs780094-?	NR	4E-49		0.06511297	[0.056-0.074] unit decrease	Illumina [31978265] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p23.3	NR	rs780094-?	NR	4E-21		3.545569	[2.81-4.28] unit decrease	Illumina [32003504] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p23.3	NR	rs780094-?	NR	1E-7		1.786202	[1.12-2.45] unit decrease	Illumina [31808917] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	2p23.3	NR	rs780094-?	NR	5E-7		0.05290519	[0.032-0.074] unit increase	Illumina [28840767] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	2p23.3	NR	rs780094-?	NR	7E-14		0.07244537	[0.053-0.091] unit increase	Illumina [29713514] (imputed)	N
796	chr2	27741236	27741237	rs780094	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	2p23.3	NR	rs780094-?	NR	1E-22		0.08676611	[0.069-0.104] unit decrease	Illumina [30861016] (imputed)	N
796	chr2	27741236	27741237	rs780094	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.3846	1E-52		0.0046	[0.0038-0.0054] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
796	chr2	27741236	27741237	rs780094	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p23.3	GCKR	rs780094-T	0.3711	3E-21		0.0261	[0.021-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p23.3	NA	rs780094-T	0.3798	6E-9		0.0096	[0.0065-0.0127] unit decrease	NR [~ 27400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2p23.3	GCKR	rs780094-T	0.387154700626533	5E-21		0.0692	[0.055-0.084] unit decrease	NR [5035015] (imputed)	N
796	chr2	27741236	27741237	rs780094	29743933	Wu B	2018-03-18	Comput Math Methods Med	Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.	Glycemic traits (multi-trait analysis)	5,947 European ancestry individuals	NA	2p23.3	NR	rs780094-?	NR	1E-10				NR [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	29632305	Lee HS	2018-04-09	Sci Rep	New Common and Rare Variants Influencing Metabolic Syndrome and Its Individual Components in a Korean Population.	Metabolic syndrome (multivariate analysis)	1,946 Korean ancestry cases, 6,427 Korean ancestry controls	430 Korean ancestry cases, 3,264 Korean ancestry controls	2p23.3	GCKR	rs780094-?	NR	3E-9				Affymetrix [344366]	N
796	chr2	27741236	27741237	rs780094	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.4253	2E-41		6.8761177	[5.88-7.88] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Total cholesterol levels	up to 33,431 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.4253	2E-13		1.0656419	[0.78-1.35] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Blood glucose levels	up to 33,431 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.4253	3E-8		0.6904345	[0.45-0.93] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	2p23.3	C2orf16, GCKR	rs780094-T	0.57	2E-8		1.35	[1.21-1.49]	Illumina [93606]	N
796	chr2	27741236	27741237	rs780094	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p23.3	GCKR	rs780094-C	0.5895	2E-7	(EA)	0.0552	[0.035-0.076] unit increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p23.3	GCKR	rs780094-C	0.5895	2E-17		0.064	[0.048-0.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	2p23.3	GCKR	rs780094-T	0.41	2E-7	(EA)	0.034	unit decrease	Affymetrix [NR] (imputed)	N
796	chr2	27741236	27741237	rs780094	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	2p23.3	GCKR	rs780094-T	0.52	7E-30	(Asian initial, BMI unadjusted)	0.1	[0.082-0.118] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
796	chr2	27741236	27741237	rs780094	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Gondoic acid (20:1n-9) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	NR	3E-8		0.002	[-0.00192-0.00592] unit decrease	Affymetrix, Illumina [2200000] (imputed)	N
796	chr2	27741236	27741237	rs780094	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Gondoic acid (20:1n-9) levels	3,521 Chinese ancestry individuals, 12,020 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.412	6E-7	(EA)	0.002	[0.002-0.002] unit decrease	Affymetrix, Illumina [2200000] (imputed)	N
796	chr2	27741236	27741237	rs780094	27911795	Schumann G	2016-11-28	Proc Natl Acad Sci U S A	KLB is associated with alcohol drinking, and its gene product ?-Klotho is necessary for FGF21 regulation of alcohol preference.	Alcohol consumption	up to 70,460 European ancestry drinker individuals	up to 35,438 European ancestry drinker individuals	2p23.3	GCKR	rs780094-T	0.40	2E-7		0.0102	[0.0065-0.0139] unit decrease	Affymetrix, Illumina, Perlegen [at least 316407] (imputed)	N
796	chr2	27741236	27741237	rs780094	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	2p23.3	GCKR	rs780094-T	0.543	2E-9		1.35	[1.22-1.48]	Illumina [570442]	N
796	chr2	27741236	27741237	rs780094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p23.3	GCKR	rs780094-C	0.6165	8E-9		0.02097104	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs780094-?	NR	4E-91				Affymetrix [NR]	N
796	chr2	27741236	27741237	rs780094	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2p23.3	NR	rs780094-?	NR	8E-101				Affymetrix [NR]	N
796	chr2	27741236	27741237	rs780094	27599772	Ram R	2016-09-07	Clin Genet	A common variant association study in ethnic Saudi Arabs reveals novel susceptibility loci for hypertriglyceridemia.	Hypertriglyceridemia	927 Saudi Arabian ancestry cases, 3,159 Saudi Arabian ancestry controls	317 Saudi Arabian ancestry cases, 1,098 Saudi Arabian ancestry controls	2p23.3	GCKR	rs780094-T	NR	2E-8		1.22	[1.01-1.48]	Affymetrix [~ 8000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.3	NR	rs780094-?	NR	4E-22	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
796	chr2	27741236	27741237	rs780094	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	2p23.3	GCKR	rs780094-C	0.59	6E-6		0.05	[0.028-0.072] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
796	chr2	27741236	27741237	rs780094	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	2p23.3	GCKR	rs780094-C	0.6	2E-8		0.085	[0.056-0.114] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
796	chr2	27741236	27741237	rs780094	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA	2p23.3	GCKR	rs780094-A	0.365345272103835	3E-10		0.017745968	[0.012-0.023] unit decrease	Illumina [197481]	N
796	chr2	27741236	27741237	rs780094	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	2p23.3	GCKR	rs780094-A	0.361159200900683	9E-23		0.03156466	[0.025-0.038] unit decrease	Illumina [197481]	N
796	chr2	27741236	27741237	rs780094	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.386	6E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
796	chr2	27741236	27741237	rs780094	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	2p23.3	GCKR	rs780094-?	NR	4E-9		0.052	[0.034-0.070] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
796	chr2	27741236	27741237	rs780094	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.42	1E-10		0.017	[0.016-0.018] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	Triglycerides	7,601 African American individuals, 3,335 Hispanic individuals	7,138 African American individuals	2p23.3	GCKR	rs780094-C	0.358	7E-9	(Hispanic)	0.0688	[NR] unit increase	Affymetrix [NR]	N
796	chr2	27741236	27741237	rs780094	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p23.3	GCKR	rs780094-?	NR	2E-24	(mannose)	0.04725	[NR] unit decrease	Affymetrix [655658]	N
796	chr2	27741236	27741237	rs780094	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2p23.3	GCKR	rs780094-C	0.613751766081311	5E-7		1.06	[1.04-1.09]	Affymetrix, Illumina [up to 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.3988	3E-10		6.511E-4	[-0.00059-0.00189] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.3929	3E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.4008	4E-24		0.001	[-0.00034-0.00234] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.3995	3E-24		0.0318	[0.026-0.038] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27741236	27741237	rs780094	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	2p23.3	GCKR	rs780094-A	0.36	6E-20	(TG)	0.13	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
796	chr2	27741236	27741237	rs780094	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.399	6E-53	(glucose/mannose + 54 other traits)	0.101	[NR] unit increase	Affymetrix, Illumina [534665]	N
796	chr2	27741236	27741237	rs780094	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	2p23.3	GCKR	rs780094-T	NR	9E-9		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
796	chr2	27741236	27741237	rs780094	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	2p23.3	GCKR	rs780094-T	0.57	5E-6		0.069	[0.040,0.098] unit increase	Illumina [561583]	N
796	chr2	27741236	27741237	rs780094	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of insulin resistance	37,037 European ancestry individuals	62,264 European ancestry individuals	2p23.3	GCKR	rs780094-C	0.62	3E-24		0.035	[0.027-0.043] unit increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood insulin	38,238 European ancestry individuals	62,264 European ancestry individuals	2p23.3	GCKR	rs780094-C	0.62	4E-20		0.032	[0.024-0.04] pmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	2p23.3	GCKR	rs780094-C	0.62	6E-38		0.029	[0.023-0.035] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27741236	27741237	rs780094	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	2p23.3	GCKR	rs780094-T	0.42	1E-9		0.05	[0.035-0.068] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
796	chr2	27741236	27741237	rs780094	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Triglycerides	17,100 European ancestry individuals, 715 Orcadian individuals	NA	2p23.3	GCKR	rs780094-G	0.63	3E-20		0.1	[NR] s.d. decrease	Affymetrix, Illumina [up to 600000]	N
796	chr2	27741236	27741237	rs780094	18439548	Ridker PM	2008-04-24	Am J Hum Genet	Loci related to metabolic-syndrome pathways including LEPR,HNF1A, IL6R, and GCKR associate with plasma C-reactive protein: the Women's Genome Health Study.	C-reactive protein	6,345 European ancestry female individuals	NA	2p23.3	GCKR	rs780094-A	NR	7E-15		0.14	[NR] mg/dl increase	Illumina [336108]	N
796	chr2	27741236	27741237	rs780094	18193044	Kathiresan S	2008-01-13	Nat Genet	Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.	Triglycerides	2,758 European ancestry individuals	18,554 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.34	3E-14		0.13	[0.09-0.17] unit increase	Affymetrix [389878]	N
796	chr2	27741236	27741237	rs780094	18193043	Willer CJ	2008-01-13	Nat Genet	Newly identified loci that influence lipid concentrations and risk of coronary artery disease.	Triglycerides	8,684 European ancestry individuals	9,741 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.39	6E-32		8.59	[NR] mg/dl increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
796	chr2	27741236	27741237	rs780094	18179892	Wallace C	2008-01-10	Am J Hum Genet	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	LDL cholesterol	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families, 1,461 European ancestry twins	2p23.3	GCKR	rs780094-T	0.39	5E-7				Affymetrix [400496]	N
796	chr2	27741236	27741237	rs780094	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Triglycerides	2,659 European ancestry type 2 diabetes cases and controls	5,217 European ancestry individuals	2p23.3	GCKR	rs780094-T	0.35	9E-8		0.5	(% variance) increase	Affymetrix [389878]	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in small VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	2E-8		0.127832	[0.083-0.172] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in medium VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	6E-9		0.132393	[0.088-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides in VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	6E-9		0.132198	[0.088-0.177] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in medium VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	1E-8		0.128902	[0.084-0.173] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small HDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645206411	2E-10		0.144918	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in medium VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	2E-8		0.12804	[0.084-0.172] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial medium VLDL particle concentration	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	1E-8		0.129627	[0.085-0.174] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of VLDLD particles	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	3E-9		0.134825	[0.09-0.179] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial leucine	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	3E-9		0.134479	[0.09-0.179] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial isoleucine	4,348 individuals	NA	2p23.3		rs780093-C	0.645447538	4E-9		0.133714	[0.089-0.178] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in medium VLDL	4,348 individuals	NA	2p23.3		rs780093-C	0.645380635	9E-9		0.130666	[0.086-0.175] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of VLDLD particles	4,734 individuals	NA	2p23.3		rs780093-C	0.645164766	8E-11		0.140795	[0.098-0.183] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting isoleucine	4,734 individuals	NA	2p23.3		rs780093-C	0.645256817	2E-9		0.129617	[0.087-0.172] mmol/l decrease	Illumina [7701709] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_52:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-10		0.0932588	[0.064-0.122] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	4E-11		0.0984113	[0.069-0.128] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_50:3_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	2E-11		0.101786	[0.072-0.131] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	4E-16		0.0992757	[0.075-0.123] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	4E-16		0.0963272	[0.073-0.12] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	1E-13		0.0879313	[0.065-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	2p23.3		rs780093-G	NR	4E-10		0.0638	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:3_[M+H]1+/Phosphatidylcholine-P_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-12		0.083328	[0.06-0.107] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:2_[M+H]1+/Phosphatidylcholine-P_36:1_[M+H]1+/Phosphatidylethanolamine-P_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	8E-13		0.0866234	[0.063-0.11] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	6E-12		0.0844062	[0.06-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:2_[M+H]1+/Phosphatidylcholine-P_34:1_[M+H]1+/Phosphatidylethanolamine-O_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	4E-11		0.081636	[0.057-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-20		0.107281	[0.084-0.13] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	7E-16		0.0977016	[0.074-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	2E-15		0.0935235	[0.07-0.117] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-13		0.0819155	[0.06-0.104] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-2O_32:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-13		0.0889613	[0.065-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Lysophosphatidylethanolamine_16:0_[M-H]1- levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	3E-12		0.0767223	[0.055-0.098] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	5E-16		0.0955747	[0.072-0.119] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	1E-11		0.0737943	[0.052-0.095] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs780093-T	NR	6E-12		0.0800099	[0.057-0.103] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27742602	27742603	rs780093	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	2p23.3	GCKR	rs780093-T	0.5145	8E-13		0.0289	[0.021-0.037] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
796	chr2	27742602	27742603	rs780093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p23.3	GCKR	rs780093-C	0.616399	6E-22		0.022170072	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
796	chr2	27742602	27742603	rs780093	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.557609	1E-10		0.02358	[0.016-0.031] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
796	chr2	27742602	27742603	rs780093	31910446	Oh SW	2020-01-07	PLoS One	Genome-wide association study of metabolic syndrome in Korean populations.	Hypertriglyceridemia	7,423 Korean ancestry cases and controls	NA	2p23.3	GCKR	rs780093-?	0.529	3E-12		1.369863	[1.25-1.49]	Affymetrix [at least 584061] (imputed)	N
796	chr2	27742602	27742603	rs780093	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	2p23.3	GCKR	rs780093-T	0.38	1E-13		1.1	[1.08-1.13]	Affymetrix, Illumina [~ 5000000] (imputed)	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	8E-10	(XXL_VLDL_PL)	0.06797383	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	7E-11	(M_VLDL_FC)	0.07675716	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	7E-10	(M_VLDL_L)	0.07060767	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	7E-10	(L_VLDL_C)	0.074388534	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	5E-12	(S_VLDL_P)	0.08061195	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	3E-10	(M_VLDL_C)	0.07599636	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-13	(XL_VLDL_P)	0.079156406	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-11	(XL_VLDL_L)	0.09054757	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-11	(L_VLDL_FC)	0.089407794	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-10	(XXL_VLDL_TG)	0.07439232	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-9	(XL_VLDL_CE)	0.0707708	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-11	(XL_VLDL_PL)	0.07792203	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	6E-10	(XXL_VLDL_PL)	0.07752909	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	5E-11	(XL_VLDL_PL)	0.082470156	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	3E-9	(XXL_VLDL_TG)	0.07429101	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	3E-9	(XL_VLDL_L)	0.087916955	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-9	(M_VLDL_L)	0.08886865	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-9	(M_VLDL_FC)	0.0886059	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-7	(M_VLDL_C)	0.07676197	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	2E-10	(S_VLDL_P)	0.08000273	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-9	(L_VLDL_FC)	0.08904497	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-8	(L_VLDL_C)	0.08406702	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-7	(XL_VLDL_CE)	0.078267135	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2p23.3	GCKR	rs780093-?	NR	1E-11	(XL_VLDL_P)	0.08519397	NR unit increase	Illumina [609262]	N
796	chr2	27742602	27742603	rs780093	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	2p23.3	GCKR	rs780093-T	0.373	1E-13		0.0485	[0.036-0.061] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
796	chr2	27742602	27742603	rs780093	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs780093-?	NR	3E-51		0.06813405	[0.059-0.077] unit decrease	Illumina [31978265] (imputed)	N
796	chr2	27742602	27742603	rs780093	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p23.3	NR	rs780093-?	NR	2E-22		3.736224	[2.99-4.49] unit decrease	Illumina [32003504] (imputed)	N
796	chr2	27742602	27742603	rs780093	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p23.3	NR	rs780093-?	NR	8E-8		1.844651	[1.17-2.52] unit decrease	Illumina [31808917] (imputed)	N
796	chr2	27742602	27742603	rs780093	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p23.3	GCKR	rs780093-T	0.4171	3E-62		0.0044	[0.0038-0.005] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
796	chr2	27742602	27742603	rs780093	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	2p23.3	GCKR	rs780093-T	0.5491	4E-9		0.0039	[0.0025-0.0053] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
796	chr2	27742602	27742603	rs780093	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p23.3	GCKR	rs780093-C	0.5414	7E-42		13.556	NR z score decrease	Illumina [26237160] (imputed)	N
796	chr2	27742602	27742603	rs780093	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	2p23.3	GCKR	rs780093-T	0.383979	6E-12		0.081971325	[0.059-0.105] unit decrease	Affymetrix [7288503] (imputed)	N
796	chr2	27742602	27742603	rs780093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p23.3		rs780093-?	NR	7E-14				NR [~ 8900000] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	NR	3E-297		0.14	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.467	8E-23	(East Asian)	0.142	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.412	3E-251	(EA)	0.141	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.369	3E-23	(Hispanic)	0.14	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	NR	1E-60		0.069	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.467	2E-8	(East Asian)	0.089	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.412	3E-47	(EA)	0.067	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	0.369	2E-8	(Hispanic)	0.087	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p23.3	NR	rs780093-T	NR	6E-7		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
796	chr2	27742602	27742603	rs780093	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2p23.3	GCKR	rs780093-T	NR	2E-16		0.0081	[0.0063-0.0099] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
796	chr2	27742602	27742603	rs780093	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2p23.3	GCKR	rs780093-T	0.413	3E-47	(Trans-ethnic initial)	0.0515	[0.044-0.059] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
796	chr2	27742602	27742603	rs780093	28298293	Hu Y	2017-03-15	J Lipid Res	Discovery and fine-mapping of loci associated with MUFAs through trans-ethnic meta-analysis in Chinese and European populations.	Palmitoleic acid (16:1n-7) levels	3,521 Chinese ancestry individuals, European individuals (see Wu 2013).	NA	2p23.3	GCKR	rs780093-T	NR	4E-12		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
796	chr2	27742602	27742603	rs780093	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	2p23.3	GCKR	rs780093-C	0.61	4E-10		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	2p23.3	GCKR	rs780093-C	0.61	1E-6	(women)	0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	2p23.3	GCKR	rs780093-C	0.61	8E-7	(women)	0.033	[0.019-0.047] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	2p23.3	GCKR	rs780093-C	0.61	2E-10		0.032	[0.022-0.042] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	2p23.3	GCKR	rs780093-C	NR	2E-6	(Japanese)	1.0758183	[1.04425991211509-1.10832920480705]	Illumina [7521072] (imputed)	N
796	chr2	27742602	27742603	rs780093	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Triglycerides	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	2p23.3	GCKR	rs780093-T	0.356	3E-15	(Hispanic)	0.108	[0.081-0.135] unit increase	Affymetrix [at least 370268] (imputed)	N
796	chr2	27742602	27742603	rs780093	26160806	Proust C	2015-08-01	Circ Cardiovasc Genet	Contribution of Rare and Common Genetic Variants to Plasma Lipid Levels and Carotid Stiffness and Geometry: A Substudy of the Paris Prospective Study 3.	Triglycerides	3,681 individuals	NA	2p23.3	C2orf16, ZNF512, GCKR	rs780093-A	0.449	7E-12		0.064	[0.046-0.082] unit increase	Illumina [101597]	N
796	chr2	27742602	27742603	rs780093	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p23.3	GCKR	rs780093-?		1E-6	(SG)	0.14	[0.081-0.199] unit increase	Illumina [693128]	N
796	chr2	27742602	27742603	rs780093	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		2p23.3	ZNF512, XAB1, GCKR, C2orf16	rs780093-T	0.41	1E-9		0.02	[0.014-0.027] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		2p23.3	GCKR	rs780093-T	NR	3E-6		0.1261	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	GCKR	rs780093-T	0.40	9E-11	(Women)	0.041	[0.029-0.053] nmol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
796	chr2	27742602	27742603	rs780093	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	GCKR	rs780093-T	0.40	7E-8	(Men)	0.026	[0.016-0.036] nmol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
796	chr2	27742602	27742603	rs780093	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p23.3	GCKR	rs780093-T	0.40	2E-16	(Men + Women)	0.032	[0.024-0.040] nmol/L decrease	Affymetrix, Illumina [2543887] (imputed)	N
796	chr2	27742602	27742603	rs780093	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2p23.3	SLC4A1AP	rs780093-T	0.416	5E-6		0.072	[0.041-0.103] cup size increase	Illumina [7422970] (imputed)	N
796	chr2	27742602	27742603	rs780093	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	GCKR	rs780093-A	NR	2E-12		0.19	[0.13-0.25] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Triglycerides-Blood Pressure (TG-BP)	22,161 European ancestry individuals	NA	2p23.3	GCKR	rs780093-A	NR	3E-10		0.18	[0.12-0.24] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2p23.3	GCKR	rs780093-T	0.418	5E-11		1.15	[1.10-1.21]	Affymetrix, Illumina [953241] (imputed)	N
796	chr2	27742602	27742603	rs780093	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	2p23.3	GCKR	rs780093-T	0.40	4E-17	(Urate)	5.15	[3.95-6.35] umol/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27742602	27742603	rs780093	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	2p23.3	FNDC4, IFT172, GCKR, C2orf16	rs780093-T	NR	7E-6		0.02	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27743153	27743154	rs780092	35046404	Chou WC	2022-01-19	NPJ Genom Med	A common variant in 11q23.3 associated with hyperlipidemia is mediated by the binding and regulation of GATA4.	Hyperlipidemia	3,310 Taiwanese ancestry cases, 6,404 Taiwanese ancestry controls	829 Taiwanese ancestry cases, 1,833 Taiwanese ancestry controls	2p23.3		rs780092-?	NR	7E-18		0.77	[0.73-0.82]	Affymetrix [597758]	N
796	chr2	27743153	27743154	rs780092	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	2p23.3	GCKR	rs780092-G	0.3248	5E-11	(total cholesterol)	3.365	NR unit decrease	Affymetrix [305158]	N
796	chr2	27743153	27743154	rs780092	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs780092-?	NR	9E-6		0.02352673	[0.013-0.034] unit decrease	Illumina [31978265] (imputed)	N
796	chr2	27743153	27743154	rs780092	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p23.3	GCKR	rs780092-?		2E-9				Affymetrix [at least 805769] (imputed)	N
796	chr2	27743153	27743154	rs780092	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Triglyceride levels	up to 33,431 European ancestry individuals	NA	2p23.3	GCKR	rs780092-G	0.1428	1E-13		5.2217927	[3.84-6.61] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
796	chr2	27743153	27743154	rs780092	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Triglycerides	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	2p23.3	GCKR	rs780092-G	0.321	2E-7	(Filipino)	0.186	[0.12-0.26] unit decrease	Affymetrix, Illumina [up to 12553142] (imputed)	N
796	chr2	27743153	27743154	rs780092	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2p23.3	GCKR	rs780092-A	0.67	1E-9	(Asian initial, BMI unadjusted)	0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [up to 1900000] (imputed)	N
796	chr2	27743153	27743154	rs780092	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	22,814 East Asian ancestry individuals	57,490 East Asian ancestry individuals	2p23.3	GCKR	rs780092-A	0.67	6E-9	(BMI unadjusted)	0.058	[0.038-0.078] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27743153	27743154	rs780092	24023260	Wu Y	2013-09-10	J Lipid Res	Genetic association with lipids in Filipinos: waist circumference modifies an APOA5 effect on triglyceride levels.	Lipid traits	1,782 Filipino ancestry mothers	1,719 Filipino ancestry offsprings	2p23.3	GCKR	rs780092-A	0.68	2E-9	(TG)	0.08	[0.060-0.100] unit increase	Affymetrix [~ 3700000] (imputed)	N
796	chr2	27743153	27743154	rs780092	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Triglycerides	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p23.3	GCKR	rs780092-G	0.33	5E-27		0.05	[0.041-0.059] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
796	chr2	27743153	27743154	rs780092	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p23.3	GCKR	rs780092-G	0.33	5E-18	(ALB)	0.0232	[-0.02972-0.07612] g/dL decrease	Affymetrix [~ 2200000] (imputed)	N
796	chr2	27743214	27743215	rs814295	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	C-reactive protein levels	75,391 Japanese ancestry individuals	NA	2p23.3	GCKR	rs814295-?	NR	2E-10		0.03589	[0.025-0.047] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27743214	27743215	rs814295	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	2p23.3	GCKR	rs814295-A	0.67	5E-20	(BMI unadjusted)	0.102	[0.08-0.124] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
796	chr2	27744088	27744089	rs74928908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p23.3	NR	rs74928908-G	0.159526	3E-21		0.023769	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
796	chr2	27745763	27745764	rs141306206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p23.3	NR	rs141306206-D	0.556424	4E-12		0.014125	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	2E-26		0.0707	[0.058-0.084] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	3E-9		0.0396	[0.027-0.053] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	1E-18		0.0617	[0.048-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	3E-9		0.0394	[0.026-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	2E-15		0.0528	[0.04-0.066] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	6E-17		0.0556	[0.043-0.069] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs71441083-A	NR	5E-12		0.046	[0.033-0.059] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27747948	27747949	rs71441083	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.3	NR	rs71441083-A	0.03484	4E-9	(DDB1)	0.1258	NR unit increase	Illumina [1671387] (imputed)	N
796	chr2	27748596	27748597	rs1260334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	2p23.3		rs1260334-A	0.436295	3E-22		0.0350267	[0.028-0.042] unit decrease	Illumina [13476599] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2p23.3		rs1260333-G	0.435483	1E-12		0.0243657	[0.018-0.031] unit decrease	Illumina [13479091] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	6E-12		0.0827671	[0.059-0.106] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	1E-11		0.0790304	[0.056-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:3_[M+H]1+/Phosphatidylcholine-P_34:2_[M+H]1+/Phosphatidylethanolamine-P_37:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	4E-10		0.0755746	[0.052-0.099] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_34:1_[M+H]1+/Phosphatidylcholine-P_34:0_[M+H]1+/Phosphatidylethanolamine-O_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	5E-16		0.0930239	[0.071-0.115] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_32:1_[M+H]1+/Phosphatidylcholine-P_32:0_[M+H]1+/Phosphatidylethanolamine-O_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	8E-12		0.0815723	[0.058-0.105] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_31:0_[M+H]1+/Phosphatidylethanolamine-O_34:0_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	3E-11		0.0770656	[0.054-0.1] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_30:1_[M+H]1+/Phosphatidylcholine-P_30:0_[M+H]1+/Phosphatidylethanolamine-O_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	4E-10		0.0693106	[0.048-0.091] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_44:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	1E-11		0.0789669	[0.056-0.102] unit decrease	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_34:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	2E-10		0.068263	[0.047-0.089] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_32:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	2p23.3		rs1260333-A	NR	3E-10		0.071952	[0.05-0.094] unit increase	Affymetrix [87696910] (imputed)	N
796	chr2	27748623	27748624	rs1260333	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	2p23.3	GCKR, C2orf16	rs1260333-A	0.543	5E-7		1.37	[1.21-1.55]	Illumina [7206774] (imputed)	N
796	chr2	27748623	27748624	rs1260333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p23.3	NR	rs1260333-?	NR	9E-31		0.04747672	[0.039-0.056] unit decrease	Illumina [31978265] (imputed)	N
796	chr2	27748623	27748624	rs1260333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p23.3	NR	rs1260333-?	NR	3E-12		2.469246	[1.78-3.16] unit decrease	Illumina [32003504] (imputed)	N
796	chr2	27748623	27748624	rs1260333	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Triglycerides	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	2p23.3	GCKR	rs1260333-A	0.52	2E-21		0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
796	chr2	27748623	27748624	rs1260333	26582766	Lu X	2015-11-18	Circ Cardiovasc Genet	Genetic Susceptibility to Lipid Levels and Lipid Change Over Time and Risk of Incident Hyperlipidemia in Chinese Populations.	Cholesterol, total	8,344 Han Chinese ancestry individuals	14,739 Han Chinese ancestry individuals	2p23.3	GCKR	rs1260333-A	0.52	3E-8		1.773	[1.15-2.4] unit increase	Affymetrix, Illumina [2573667] (imputed)	N
796	chr2	27748623	27748624	rs1260333	20864672	Waterworth DM	2010-09-23	Arterioscler Thromb Vasc Biol	Genetic variants influencing circulating lipid levels and risk of coronary artery disease.	Triglycerides	up to 17,723 European ancestry individuals	up to 37,774 European ancestry individuals, up to 9,665 Indian Asian ancestry individuals	2p23.3	GCKR	rs1260333-C	0.55	2E-19		0.05	[0.04-0.06] unit decrease	Affymetrix, Illumina, Perlegen [2155369] (imputed)	N
796	chr2	27748903	27748904	rs1313566	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs1313566-?	NR	3E-10		0.03744	[0.026-0.049] unit increase novel	Illumina [6108953] (imputed)	N
796	chr2	27748903	27748904	rs1313566	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs1313566-?	NR	4E-10		0.02858	[0.02-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27748992	27748993	rs11336847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p23.3		rs11336847-A	NR	6E-12		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
796	chr2	27748992	27748993	rs11336847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p23.3		rs11336847-A	NR	2E-45		0.0344	[0.03-0.039] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
796	chr2	27748992	27748993	rs11336847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p23.3		rs11336847-A	NR	9E-187		0.0724	[0.068-0.077] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
796	chr2	27748992	27748993	rs11336847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p23.3	GCKR	rs11336847-A	0.616467	2E-12		0.01595258	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27748992	27748993	rs11336847	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	2p23.3	NR	rs11336847-A	0.5996	5E-16		8.109	[NR] unit increase	Affymetrix [7003540] (imputed)	N
796	chr2	27748992	27748993	rs11336847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p23.3	GCKR	rs11336847-A	0.6166	1E-34		0.04499914	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27748992	27748993	rs11336847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p23.3	GCKR	rs11336847-A	0.6166	1E-27		0.04012582	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
796	chr2	27750138	27750139	rs6744393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p23.3		rs6744393-?	NR	3E-9				NR [~ 8900000] (imputed)	N
796	chr2	27750544	27750545	rs2950835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p23.3		rs2950835-G	0.422098653	9E-20		0.08553269	[0.067-0.104] unit increase	Illumina [13429769] (imputed)	N
796	chr2	27750544	27750545	rs2950835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p23.3		rs2950835-G	NR	4E-28		0.0225	[0.019-0.026] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
796	chr2	27750544	27750545	rs2950835	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.3	GCKR	rs2950835-A	0.3746	3E-9	(South Asian)	0.1322	[0.088-0.176] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	9E-20		0.0389258	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	4E-15		0.0337205	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	8E-13		0.0306109	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	1E-17		0.0359763	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	2E-10		0.0273422	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	4E-15		0.0337353	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	7E-22		0.0413749	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	2E-9		0.0258812	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	1E-9		0.0261259	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	2p23.3		rs11127048-G	0.385884	3E-21		0.040686	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
796	chr2	27752462	27752463	rs11127048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p23.3		rs11127048-A	0.409716658	2E-8		0.091719255	[0.06-0.124] unit increase	Illumina [13429768] (imputed)	N
796	chr2	27752462	27752463	rs11127048	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	2p23.3	GCKR	rs11127048-G	0.381191	8E-17		0.01997	[0.015-0.025] unit decrease	Affymetrix [19400838] (imputed)	N
796	chr2	27752462	27752463	rs11127048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs11127048-A	0.618763	8E-14				Affymetrix, Illumina [17210439] (imputed)	N
796	chr2	27752462	27752463	rs11127048	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2p23.3	NR	rs11127048-A	0.616569	6E-19		0.018107	[0.014-0.022] unit increase	Affymetrix [16668957] (imputed)	N
796	chr2	27752462	27752463	rs11127048	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	2p23.3	GCKR	rs11127048-G	0.38	1E-16	(women)	0.035	[0.027-0.043] unit decrease	Affymetrix [12489781] (imputed)	N
796	chr2	27752870	27752871	rs6753534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	2p23.3		rs6753534-T	0.429011	1E-10		0.0293236	[0.02-0.038] unit decrease	Illumina [13471431] (imputed)	N
796	chr2	27752870	27752871	rs6753534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p23.3	intergenic	rs6753534-C	0.43465	2E-11		0.015070126	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27753877	27753878	rs4665985	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	2p23.3	C2orf16	rs4665985-?	NR	2E-8		0.0495	NR % increase	Affymetrix [9390170] (imputed)	N
796	chr2	27753877	27753878	rs4665985	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	2p23.3	GCKR, LOC100420668	rs4665985-?	NR	5E-7		5.016	NR unit decrease	Illumina [up to 1520000] (imputed)	N
796	chr2	27753877	27753878	rs4665985	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	2p23.3	GCKR	rs4665985-C	0.28	2E-8		0.04	[0.03-0.05] drinks per week increase	Affymetrix [NR] (imputed)	N
796	chr2	27753877	27753878	rs4665985	28485404	Jorgenson E	2017-05-09	Mol Psychiatry	Genetic contributors to variation in alcohol consumption vary by race/ethnicity in a large multi-ethnic genome-wide association study.	Alcohol consumption (drinks per week)	23,104 European ancestry non-drinker individuals, 47,967 European ancestry drinker individuals, 2,673 Hispanic/Latino non-drinker individuals, 4,374 Hispanic/Latino drinker individuals, 3,288 East Asian ancestry non-drinker individuals, 2,746 East Asian ancestry drinker individuals, 1,165 African American non-drinkers individuals, 1,310 African American drinker individuals.	NA	2p23.3	GCKR	rs4665985-C	0.28	1E-6	(EA, adjusted for lean body mass)	0.04	[0.02-0.05] drinks per week increase	Affymetrix [NR] (imputed)	N
796	chr2	27754625	27754627	rs74450311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	2p23.3		rs74450311-C	0.293552	8E-14		0.0288659	[0.021-0.036] unit decrease	Illumina [13478956] (imputed)	N
796	chr2	27755824	27755825	rs4665987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2p23.3		rs4665987-A	0.578502	7E-25		0.0300045	[0.024-0.036] unit decrease	Illumina [13478778] (imputed)	N
796	chr2	27755824	27755825	rs4665987	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs4665987-?	NR	2E-21		0.03616	[0.029-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27757342	27757343	rs10181342	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	2p23.3	C2orf16	rs10181342-G	0.21105701	1E-25		0.038226	[0.033-0.043] unit decrease	Affymetrix [9463307] (imputed)	N
796	chr2	27761435	27761436	rs4665988	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs4665988-?	NR	3E-8		0.02399	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27768412	27768413	rs148738653	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	Intergenic	rs148738653-T	0.996	2E-6	(AA)	0.135	unit increase	Illumina [NR] (imputed)	N
796	chr2	27773054	27773055	rs62141280	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.3	NR	rs62141280-?	NR	6E-9				Illumina [7760689] (imputed)	N
796	chr2	27773054	27773055	rs62141280	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.3	NR	rs62141280-?	NR	4E-10				Illumina [7760689] (imputed)	N
796	chr2	27773054	27773055	rs62141280	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.3	NR	rs62141280-?	NR	2E-9				Illumina [7760689] (imputed)	N
796	chr2	27779318	27779319	rs115960647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs115960647-T	NR	1E-12		0.07	[0.051-0.089] unit increase	Affymetrix [9000000] (imputed)	N
796	chr2	27779564	27779565	rs202049562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p23.3	AC109829.1	rs202049562-A	0.178923	5E-16		0.023837753	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27779564	27779565	rs202049562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p23.3	AC109829.1	rs202049562-A	0.178938	1E-16		0.0244902	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27779564	27779565	rs202049562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p23.3	AC109829.1	rs202049562-A	0.178918	3E-12		0.021702686	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
796	chr2	27781771	27781772	rs182700961	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs182700961-?		2E-11		0.0306	[0.022-0.04] unit increase	Illumina [31500000] (imputed)	N
796	chr2	27781771	27781772	rs182700961	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	2p23.3	GCKR, C2orf16	rs182700961-?	NR	1E-12		0.0306	[0.022-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
796	chr2	27783391	27783392	rs62141290	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.3	GCKR	rs62141290-?	NR	1E-17		0.02121	[0.016-0.027] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
796	chr2	27783391	27783392	rs62141290	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2p23.3	GCKR	rs62141290-?	NR	9E-16		0.0222	[0.017-0.028] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
797	chr2	27789860	27789861	rs965813	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p23.3	AC109829.1	rs965813-A	0.333	3E-6		0.0415	[0.024-0.059] unit decrease	Affymetrix [at least 805769] (imputed)	N
797	chr2	27801417	27801418	rs1919126	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	2p23.3	C2orf16	rs1919126-C		9E-6		0.20432469	[0.11-0.29] unit decrease	Illumina [247039]	N
797	chr2	27801758	27801759	rs1919128	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Triglyceride levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	2p23.3	C2orf16	rs1919128-G	0.529	7E-6		0.0379	[0.021-0.054] unit increase	Affymetrix [at least 805769] (imputed)	N
797	chr2	27801758	27801759	rs1919128	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA	2p23.3	GCKR	rs1919128-G	NR	2E-8	(conditioned on rs1260326)	0.022	[0.014-0.03] unit decrease	Illumina [106489]	N
797	chr2	27801758	27801759	rs1919128	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	2p23.3	C2orf16	rs1919128-G	NR	4E-9	(conditioned on rs1260326)	0.023	[0.015-0.031] unit decrease	Illumina [106489]	N
797	chr2	27801758	27801759	rs1919128	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	C2orf16	rs1919128-A	NR	2E-9		0.18	[0.12-0.24] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
797	chr2	27802504	27802505	rs187306222	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p23.3	C2orf16	rs187306222-T	0.999	4E-6	(AA)	0.346	unit increase	Illumina [NR] (imputed)	N
797	chr2	27810518	27810518	rs574622475	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2p23.3	NR	rs574622475-CT	0.250611	1E-8		0.0642707	[0.042-0.086] unit decrease	Affymetrix [21375087] (imputed)	N
797	chr2	27815509	27815510	rs13022873	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	ZNF512	rs13022873-A	NR	5E-9		0.17	[0.11-0.23] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
797	chr2	27827091	27827092	rs12464616	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2p23.3	ZNF512	rs12464616-?		1E-8				Illumina [5041948] (imputed)	N
797	chr2	27835081	27835082	rs78170284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.3		rs78170284-?	NR	1E-20				NR [~ 8900000] (imputed)	N
797	chr2	27836604	27836605	rs13020949	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2p23.3	NR	rs13020949-C	0.262425	2E-8		0.045149338	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
797	chr2	27839368	27839369	rs4666000	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p23.3	NR	rs4666000-C	0.270218	3E-12		0.0534883	[0.039-0.068] unit decrease	Affymetrix [17914406] (imputed)	N
797	chr2	27839368	27839369	rs4666000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	CCDC121	rs4666000-?	NR	2E-6	(TAG 50:4)	0.1675413	[0.098-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
797	chr2	27839368	27839369	rs4666000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	CCDC121	rs4666000-?	NR	2E-6	(LPC 16:1)	0.16638912	[0.097-0.236] unit increase	Affymetrix [at least 2500000] (imputed)	N
797	chr2	27839368	27839369	rs4666000	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.3	CCDC121	rs4666000-?	NR	1E-6	(LPC 20:3)	0.16897386	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
797	chr2	27840639	27840640	rs4666002	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	2p23.3	GCKR	rs4666002-?	NR	7E-11	(levels)	0.0	[1.10-0.70] % increase	Illumina [NR] (imputed)	N
797	chr2	27840772	27840772	rs373931589	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p23.3	ZNF512	rs373931589-CA	0.2105	5E-13		0.0167	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
797	chr2	27844600	27844601	rs1881396	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Cholesterol	6,840 Korean ancestry individuals	NA	2p23.3	ZNF512	rs1881396-G	0.3313	3E-8	(total cholesterol)	2.793	NR unit decrease	Affymetrix [305158]	N
797	chr2	27844600	27844601	rs1881396	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	2p23.3	ZNF512, GPN1	rs1881396-T	0.71	1E-6		1.34	[1.19-1.50]	Illumina [93606]	N
797	chr2	27851917	27851918	rs3749147	33763119	Read RW	2021-03-02	Front Genet	Genome-Wide Identification of Rare and Common Variants Driving Triglyceride Levels in a Nevada Population.	Triglyceride levels	9,183 European ancestry individuals	35,321 European ancestry individuals	2p23.3		rs3749147-A	NR	4E-10		6.601	mg/dl increase	NR [5712318]	N
797	chr2	27851917	27851918	rs3749147	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA	2p23.3	GCKR	rs3749147-A	NR	1E-7	(conditioned on rs1260326)	0.022	[0.012-0.032] unit decrease	Illumina [106489]	N
797	chr2	27851917	27851918	rs3749147	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	2p23.3	GPN1	rs3749147-A	NR	6E-8	(conditioned on rs1260326)	0.022	[0.014-0.03] unit decrease	Illumina [106489]	N
797	chr2	27851917	27851918	rs3749147	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Waist Circumference - Triglycerides (WC-TG)	22,161 European ancestry individuals	NA	2p23.3	CCDC121	rs3749147-C	NR	1E-9		0.18	[0.12-0.24] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
797	chr2	27855923	27855924	rs6547741	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oral cavity cancer	2,717 European ancestry cases, 273 cases, 5,984 European ancestry controls, 601 controls	NA	2p23.3	GPN1, C2orf16, ZNF512, CCDC121	rs6547741-G	0.46	4E-8		1.1983223	NR	Illumina [7574753] (imputed)	N
797	chr2	27859316	27859317	rs111571364	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2p23.3	GPN1	rs111571364-T	0.02	8E-6	(Age 20-60 years)	3.46	[2.01-5.97]	Affymetrix, Illumina [up to 17585496] (imputed)	N
797	chr2	27860550	27860551	rs2178197	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p23.3	NR	rs2178197-G	0.569083	2E-9	(Conditioned on chr2:27730940)	0.008781445	[0.0059-0.0117] unit decrease	NR [~ 10000000] (imputed)	N
797	chr2	27861706	27861707	rs11692692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p23.3		rs11692692-?	NR	2E-9				NR [~ 8900000] (imputed)	N
797	chr2	27866138	27866139	rs77350364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.3	NR	rs77350364-G	0.276852	2E-24				Affymetrix, Illumina [24653286] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	7E-29		0.0604	[0.05-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	2E-9		0.0326	[0.022-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	3E-10		0.036	[0.025-0.047] unit increase	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	2E-18		0.0497	[0.039-0.061] unit increase	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	7E-10		0.0334	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	2E-11		0.0366	[0.026-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr2	27907443	27907444	rs77532628	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.3	NR	rs77532628-C	NR	1E-13		0.0403	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
797	chr2	27907472	27907473	rs17006206	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	2p23.3	SLC4A1AP	rs17006206-G	0.10	2E-6		2.05	[1.52-2.76]	Illumina [2505093] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	9E-10		0.0328	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	9E-39		0.0697	[0.059-0.08] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	1E-12		0.038	[0.028-0.048] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	3E-16		0.0459	[0.035-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	3E-9		0.0317	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	7E-13		0.0385	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	1E-18		0.0472	[0.037-0.058] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	2E-21		0.0508	[0.04-0.061] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27929022	27929023	rs35315097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.2	NR	rs35315097-C	NR	2E-12		0.0379	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27933600	27933601	rs76870318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs76870318-A	NR	7E-17		0.0711	[0.054-0.088] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27933600	27933601	rs76870318	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.2	NR	rs76870318-A	NR	5E-11		0.056	[0.039-0.073] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	27939070	27939071	rs115386260	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p23.2	NA	rs115386260-T		3E-9		0.0141979	[0.0095-0.0189] unit decrease	Illumina [13288253] (imputed)	N
798	chr2	27941887	27941888	rs6742571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p23.2		rs6742571-G	NR	5E-15		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
798	chr2	27980943	27980944	rs10209020	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p23.2	MRPL33	rs10209020-C		1E-12		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
798	chr2	27987220	27987221	rs13006480	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	2p23.2	MRPL33	rs13006480-G	0.389	8E-13		1.1111112	[NR]	Illumina [6603247] (imputed)	N
798	chr2	27988820	27988821	rs13013484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p23.2		rs13013484-A	NR	4E-20		0.0161	[0.013-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
798	chr2	27988820	27988821	rs13013484	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2p23.2	MRPL33	rs13013484-A	0.7271	3E-10		0.01574197	[0.011-0.021] unit decrease	Affymetrix [11514936] (imputed)	N
798	chr2	27989908	27989909	rs4665390	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p23.2	NR	rs4665390-T	0.256351	1E-21		0.019999	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
798	chr2	27995780	27995781	rs3736594	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.2	MRPL33	rs3736594-A	0.2685	1E-15		9.176E-4	[-0.00028-0.00212] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
798	chr2	27995780	27995781	rs3736594	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2p23.2	MRPL33	rs3736594-A	0.2727	2E-16		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
798	chr2	27999966	27999967	rs74974644	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.2	GCKR	rs74974644-?	NR	6E-12		0.03408	[0.023-0.045] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
798	chr2	28018130	28018131	rs36035825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.2	NR	rs36035825-G	0.270468	4E-31				Affymetrix, Illumina [24558453] (imputed)	N
798	chr2	28018130	28018131	rs36035825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p23.2	NR	rs36035825-G	0.203874	3E-26		0.024165	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
798	chr2	28018292	28018293	rs4666012	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.2	NR	rs4666012-G	0.278631	9E-25				Affymetrix, Illumina [24332387] (imputed)	N
798	chr2	28019174	28019175	rs4666014	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	2p23.2	RBKS	rs4666014-?	NR	8E-9		0.02427	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
798	chr2	28019366	28019367	rs4666015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	2p23.2		rs4666015-A	0.535191	4E-8		0.0184383	[0.012-0.025] unit decrease	Illumina [13478792] (imputed)	N
798	chr2	28019823	28019824	rs114308869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs114308869-A	NR	7E-20		0.0778	[0.061-0.094] unit increase	Affymetrix [9000000] (imputed)	N
798	chr2	28019965	28019966	rs35679500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p23.2		rs35679500-C	NR	5E-24		0.0193	[0.016-0.023] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
798	chr2	28020156	28020157	rs12623170	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p23.2	RBKS	rs12623170-C	NR	5E-8		1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
798	chr2	28020156	28020157	rs12623170	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p23.2	RBKS	rs12623170-C	NR	1E-6	(EA)	1.0670081	[1.04-1.09]	Illumina [6627481] (imputed)	N
798	chr2	28020156	28020157	rs12623170	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p23.2	RBKS	rs12623170-C	NR	3E-8		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
798	chr2	28020965	28020966	rs3935148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	2p23.2		rs3935148-A	0.537079	4E-9		0.0181334	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
798	chr2	28020965	28020966	rs3935148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2p23.2		rs3935148-A	0.537103	3E-10		0.019744	[0.014-0.026] unit increase	Illumina [13478961] (imputed)	N
798	chr2	28020965	28020966	rs3935148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	2p23.2	NR	rs3935148-T	0.463454	1E-9		0.02285	[0.016-0.03] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
798	chr2	28023061	28023062	rs11686001	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p23.2	NR	rs11686001-?	NR	4E-6		0.0079224	[0.0046-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
798	chr2	28023283	28023284	rs11127126	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2p23.2	RBKS	rs11127126-T	0.3777	5E-13		0.0057	[0.0041-0.0073] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
798	chr2	28024330	28024331	rs4630723	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	2p23.2	RBKS	rs4630723-?	NR	4E-8		0.02186	[0.014-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
798	chr2	28024983	28024984	rs4632296	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p23.2	NR	rs4632296-?	NR	1E-12		1.0738	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
798	chr2	28033537	28033538	rs12474906	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12474906-?	NR	3E-10				NR [2625067]	N
798	chr2	28033537	28033538	rs12474906	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs12474906-?	NR	4E-9				NR [2625067]	N
798	chr2	28033537	28033538	rs12474906	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs12474906-A	0.7873	1E-9		0.08593099	[0.058-0.114] unit increase	NR [NR]	N
798	chr2	28033537	28033538	rs12474906	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs12474906-A	0.7873	8E-9		0.07945648	[0.052-0.106] unit increase	NR [NR]	N
798	chr2	28033537	28033538	rs12474906	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs12474906-?		9E-9				NR [8377093]	N
798	chr2	28033537	28033538	rs12474906	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs12474906-?		4E-8				NR [520857]	N
798	chr2	28033537	28033538	rs12474906	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		RBKS, MRPL33	rs12474906-?		8E-9				NR [6786993] (imputed)	N
798	chr2	28033537	28033538	rs12474906	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		BRE, GPN1, MIR4263, MRPL33, RBKS, SLC4A1AP, SUPT7L	rs12474906-A	NR	4E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
798	chr2	28043390	28043391	rs74994332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs74994332-C	NR	2E-10		0.042	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
798	chr2	28046833	28046834	rs115093996	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.2	NR	rs115093996-T	0.988145	4E-8		0.0534675	[0.034-0.072] unit decrease	NR [NR]	N
799	chr2	28066121	28066122	rs74446114	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p23.2	C2orf16, ZNF512, CCDC121, GPN1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE-AS1, BRE	rs74446114-C	0.18500000000000005	1E-7		1.0801469		NR [9372253] (imputed)	N
799	chr2	28076247	28076248	rs4447576	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.2	BRE	rs4447576-?	NR	9E-6	(TAG 50:4)	0.18498036	[0.1-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
799	chr2	28081438	28081439	rs140948699	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.2	NR	rs140948699-G	0.01742	2E-8	(RBKS)	0.02975	NR unit decrease	Illumina [1671387] (imputed)	N
799	chr2	28083379	28083380	rs72810550	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p23.2	NR	rs72810550-?	NR	2E-8				Illumina [7760689] (imputed)	N
799	chr2	28113910	28113911	rs2305929	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	2p23.2	NR	rs2305929-G	0.17600000000000005	2E-8		1.1169441	[NR]	NR [9372253] (imputed)	N
799	chr2	28118762	28118763	rs68118529	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.2	NR	rs68118529-T	0.0381999	3E-10		0.050711	[0.035-0.067] unit increase	NR [19129689] (imputed)	N
799	chr2	28122889	28122890	rs76260822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs76260822-T	NR	4E-12		0.0651	[0.047-0.084] unit increase	Affymetrix [9000000] (imputed)	N
799	chr2	28143016	28143017	rs10173848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p23.2		rs10173848-?	NR	2E-7				NR [~ 8900000] (imputed)	N
799	chr2	28158908	28158909	rs148298182	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p23.2	NR	rs148298182-?	NR	5E-6		4.556	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
800	chr2	28203293	28203294	rs898031	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2p23.2		rs898031-T	0.29	1E-9		0.09	unit decrease	Illumina [2398641] (imputed)	N
800	chr2	28244925	28244926	rs62140395	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p23.2	BABAM2	rs62140395-C	0.1172	9E-15		0.05	[0.037-0.063] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
800	chr2	28244925	28244926	rs62140395	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p23.2	NR	rs62140395-C	0.1204	8E-12	(men)	0.0755	[0.054-0.097] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
800	chr2	28246840	28246841	rs62140396	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p23.2	MIR4263	rs62140396-G	0.883509	5E-25		0.00358186	[0.0029-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	8E-29		0.0732	[0.06-0.086] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	2E-9		0.0393	[0.026-0.052] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	1E-20		0.0642	[0.051-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	3E-10		0.0433	[0.03-0.057] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	5E-9		0.0386	[0.026-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	1E-17		0.0563	[0.043-0.069] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	3E-17		0.0556	[0.043-0.069] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28254893	28254894	rs79468673	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.2	NR	rs79468673-G	NR	1E-11		0.0446	[0.032-0.058] unit increase	Affymetrix [9000000] (imputed)	N
800	chr2	28268741	28268742	rs115640879	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2p23.2	BRE	rs115640879-T	0.0766	1E-11		0.0241	[0.017-0.032] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
800	chr2	28288391	28288392	rs10173528	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p23.2	RBKS	rs10173528-T	0.606761460010008	5E-8		0.0030036	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
800	chr2	28293005	28293006	rs56078812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.2		rs56078812-?	NR	2E-8				NR [~ 8900000] (imputed)	N
800	chr2	28293298	28293299	rs13409819	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.2	NR	rs13409819-C	0.461414	2E-13		0.0232982	[0.017-0.03] unit decrease	NR [19129689] (imputed)	N
800	chr2	28303712	28303713	rs2337699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p23.2		rs2337699-?	NR	3E-14				NR [~ 8900000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	2E-26		0.04	[0.033-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	1E-14		0.029	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	7E-13		0.0283	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	5E-11		0.0246	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	8E-13		0.0281	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	8E-10		0.0231	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	2E-13		0.0276	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	2E-13		0.0276	[0.02-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	3E-14		0.0285	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	1E-15		0.0302	[0.023-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28315769	28315770	rs13016086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.2	NR	rs13016086-C	NR	9E-14		0.0281	[0.021-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28320032	28320033	rs7572644	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin and paclitaxel in ovarian cancer (Caspase 3/7 EC50)	74 lymphoblastoid cell lines	NA	2p23.2	BRE	rs7572644-?	NR	6E-6				Illumina [6243550] (imputed)	N
801	chr2	28329312	28329313	rs6737205	28039329	Noordam R	2016-12-30	J Med Genet	A genome-wide interaction analysis of tricyclic/tetracyclic antidepressants and RR and QT intervals: a pharmacogenomics study from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	RR interval (tricyclic/tetracyclic antidepressant use interaction)	1,417 European ancestry users, 295 African American users, 174 Hispanic or Latino ancestry users, 44,289  European ancestry non-users, 9,940 African American non-users, 13,634 Hispanic or Latino ancestry non-users	NA	2p23.2	BRE	rs6737205-A	0.94	8E-9	(EA)	56.3	[37.29-75.31] unit increase	Affymetrix, Illumina [NR] (imputed)	N
801	chr2	28333108	28333109	rs55819434	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	2p23.2	BABAM2	rs55819434-A	0.91	6E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [8662096] (imputed)	N
801	chr2	28344998	28344999	rs13428826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.2	BRE	rs13428826-G	NR	2E-8		0.0202706	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
801	chr2	28347681	28347682	rs7601155	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2p23.2	BRE	rs7601155-T	0.13	2E-7	(pooled)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
801	chr2	28347681	28347682	rs7601155	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.2	RBKS	rs7601155-?	NR	3E-6	(LPC 20:3)	0.32226378	[0.19-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
801	chr2	28358750	28358751	rs10189434	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p23.2	BRE	rs10189434-?	NR	2E-9		0.0865	[0.058-0.115] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
801	chr2	28358750	28358751	rs10189434	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p23.2	BRE	rs10189434-C	0.74	1E-9		0.088	[0.061-0.115] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	1E-12		0.0257	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	3E-34		0.0443	[0.037-0.051] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	2E-13		0.0266	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	4E-12		0.0265	[0.019-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	6E-10		0.0224	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	8E-16		0.0293	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	5E-9		0.0213	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	2E-17		0.0308	[0.024-0.038] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	3E-18		0.0316	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	2E-14		0.0277	[0.021-0.035] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28359015	28359016	rs72814468	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p23.2	NR	rs72814468-C	NR	4E-11		0.024	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
801	chr2	28365913	28365914	rs17006576	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p23.2	BABAM2	rs17006576-G	0.7384	2E-15		0.124	[0.093-0.155] unit decrease	Affymetrix [~ 11900000] (imputed)	N
801	chr2	28369435	28369436	rs6741499	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p23.2	BRE	rs6741499-C	0.74	1E-8				Affymetrix, Illumina [8002429] (imputed)	N
801	chr2	28369435	28369436	rs6741499	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p23.2	BABAM2	rs6741499-C	0.7388	4E-15		0.122	[0.091-0.153] unit decrease	Affymetrix [~ 11900000] (imputed)	N
801	chr2	28373551	28373552	rs1038694	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p23.2	LOC100505736	rs1038694-?	NR	4E-10		0.018077442	[0.012-0.024] unit increase	Illumina [27896057] (imputed)	N
801	chr2	28373577	28373578	rs79635514	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs79635514-G	NR	8E-14		0.0549	[0.041-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
801	chr2	28378558	28378559	rs60751755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p23.2	BRE	rs60751755-T	NR	3E-8		0.0162611	[0.01-0.022] unit decrease	Affymetrix [321788] (imputed)	N
801	chr2	28383412	28383413	rs74949966	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.2	NR	rs74949966-C	0.91276	3E-11		0.0242816	[0.017-0.031] unit decrease	NR [NR]	N
801	chr2	28411021	28411022	rs10186858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.2	BRE	rs10186858-G	NR	1E-9		0.0177798	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
801	chr2	28414301	28414302	rs12622788	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2p23.2		rs12622788-A	0.28	4E-11		0.09	unit decrease	Illumina [2093892] (imputed)	N
801	chr2	28414301	28414302	rs12622788	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2p23.2		rs12622788-A	0.28	5E-9		0.09	unit decrease	Illumina [2398641] (imputed)	N
801	chr2	28414301	28414302	rs12622788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p23.2	BRE	rs12622788-A	NR	1E-9		0.019946	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
801	chr2	28417503	28417504	rs6722113	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p23.2	BABAM2	rs6722113-A	0.3353	8E-12		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
801	chr2	28418030	28418031	rs6712705	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p23.2	NR	rs6712705-C	0.374	8E-6	(IFNalpha_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
801	chr2	28421472	28421473	rs55807911	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2p23.2	LOC100505736	rs55807911-T	0.801572	5E-10	(EA)	0.0101316	[0.0069-0.0133] unit decrease	Affymetrix [~ 8800000] (imputed)	N
801	chr2	28424471	28424472	rs17709034	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2p23.2	GCKR	rs17709034-?	NR	6E-10		0.02165	[0.015-0.029] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
802	chr2	28443049	28443050	rs7349418	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p23.2	LOC100505736	rs7349418-C	0.44644	3E-32		0.0060097	[0.005-0.007] unit increase	Affymetrix [13995440] (imputed)	N
802	chr2	28455335	28455336	rs75225803	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.2	BRE	rs75225803-C	0.911642	4E-11		0.0239222	[0.017-0.031] unit increase	Affymetrix [NR] (imputed)	N
802	chr2	28464197	28464198	rs28997579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs28997579-T	NR	5E-10		0.0525	[0.036-0.069] unit increase	Affymetrix [9000000] (imputed)	N
802	chr2	28464197	28464198	rs28997579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs28997579-T	NR	2E-11		0.0565	[0.04-0.073] unit increase	Affymetrix [9000000] (imputed)	N
802	chr2	28464289	28464290	rs114295720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs114295720-T	NR	3E-11		0.0608	[0.043-0.079] unit increase	Affymetrix [9000000] (imputed)	N
802	chr2	28464289	28464290	rs114295720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p23.2	NR	rs114295720-T	NR	4E-12		0.0668	[0.048-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
802	chr2	28464289	28464290	rs114295720	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs114295720-T	NR	6E-11		0.0599	[0.042-0.078] unit increase	Affymetrix [9000000] (imputed)	N
802	chr2	28499324	28499325	rs114574084	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p23.2	NR	rs114574084-C	0.974308	6E-9		0.0385755	[0.026-0.052] unit increase	NR [NR]	N
802	chr2	28503940	28503941	rs12468596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p23.2	BRE	rs12468596-A	NR	2E-8		0.0200527	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
802	chr2	28504149	28504150	rs870969	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p23.2	BRE	rs870969-C	NR	4E-8		0.0199195	[0.013-0.027] unit increase	Affymetrix [321016] (imputed)	N
802	chr2	28516270	28516271	rs7567409	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p23.2	BRE, LOC100505716	rs7567409-A	0.155	3E-7		1.08058	[1.05-1.11]	NR [9372253] (imputed)	N
802	chr2	28529636	28529637	rs138980743	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.2	NR	rs138980743-T	0.03136	1E-10	(DDB1)	0.1406	NR unit increase	Illumina [1671387] (imputed)	N
802	chr2	28567625	28567626	rs12466960	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p23.2	Intergenic	rs12466960-?	NR	5E-6		1.3559321	[NR]	Affymetrix [492217] (imputed)	N
802	chr2	28570537	28570538	rs884439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.2		rs884439-?	NR	7E-10				NR [~ 8900000] (imputed)	N
803	chr2	28584314	28584315	rs7602568	26293465	Durda P	2015-08-20	Arterioscler Thromb Vasc Biol	Plasma Levels of Soluble Interleukin-2 Receptor ?: Associations With Clinical Cardiovascular Events and Genome-Wide Association Scan.	Soluble interleukin-2 receptor subunit alpha	2,964 European ancestry individuals, 683 African American individuals	4,464 European ancestry individuals	2p23.2	BRE, FOSL2	rs7602568-?		6E-6	(AA)			Illumina [2200000] (imputed)	N
803	chr2	28585807	28585808	rs4665412	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p23.2	BABAM2	rs4665412-?	NR	4E-9		1.0458064	NR	Affymetrix [9154080] (imputed)	N
803	chr2	28610626	28610627	rs10176110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p23.2	FOSL2	rs10176110-T	0.872319	8E-16		0.0238689	[0.018-0.03] unit decrease	Affymetrix [NR] (imputed)	N
803	chr2	28613301	28613302	rs71443018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p23.2		rs71443018-?	NR	1E-212				NR [~ 8900000] (imputed)	N
803	chr2	28614303	28614304	rs11680860	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p23.2	FLJ31356, FOSL2	rs11680860-A	0.2214	9E-35		1.119	NR	Affymetrix [9154080] (imputed)	N
803	chr2	28614400	28614401	rs11677002	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	2p23.2	FOSL2, RBKS	rs11677002-T	0.5486	7E-13		1.0309278	[1.03-1.04]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
803	chr2	28614793	28614794	rs925255	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2p23.2	FOSL2	rs925255-?		6E-11				Illumina [9725440] (imputed)	N
803	chr2	28614793	28614794	rs925255	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2p23.2	FOSL2	rs925255-?		1E-9				Illumina [9560910] (imputed)	N
803	chr2	28614793	28614794	rs925255	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p23.2	FOSL2	rs925255-?	NR	8E-18	(subset analysis)			Illumina [130052]	N
803	chr2	28614793	28614794	rs925255	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.2	NR	rs925255-G	0.55	1E-16	(EA)	1.1052196	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
803	chr2	28614793	28614794	rs925255	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p23.2	FOSL2, BRE	rs925255-C	0.557	3E-15		1.092	[1.061-1.124]	Affymetrix, Illumina [1230000] (imputed)	N
803	chr2	28618160	28618161	rs12473028	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	2p23.2		rs12473028-G	0.579	3E-6		0.053	[0.031-0.075] unit increase	Affymetrix [6030650] (imputed)	N
803	chr2	28618160	28618161	rs12473028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.2		rs12473028-?	NR	1E-9				NR [~ 8900000] (imputed)	N
803	chr2	28624832	28624833	rs4666070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.2		rs4666070-?	NR	9E-12				NR [~ 8900000] (imputed)	N
803	chr2	28628909	28628910	rs13405815	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2p23.2	NR	rs13405815-C	0.5362	3E-9		1.036162	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
803	chr2	28629342	28629343	rs6547850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p23.2		rs6547850-T	NR	3E-8		0.0294	[0.019-0.04] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
803	chr2	28632190	28632191	rs931949	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2p23.2	NR	rs931949-?	NR	8E-6		0.0567	[0.032-0.082] unit decrease	Illumina [at least 560000] (imputed)	N
803	chr2	28632376	28632377	rs7606480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p23.2		rs7606480-?	NR	1E-9				NR [~ 8900000] (imputed)	N
803	chr2	28635739	28635740	rs7562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p23.2		rs7562-C	NR	2E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
803	chr2	28635739	28635740	rs7562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p23.2		rs7562-C	NR	6E-11		0.0125	[0.0088-0.0162] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
803	chr2	28635739	28635740	rs7562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p23.2		rs7562-?	NR	2E-10				NR [~ 8900000] (imputed)	N
803	chr2	28635739	28635740	rs7562	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2p23.2	FOSL2	rs7562-T	0.5306	9E-7	(conditional)	0.0251	NR unit increase	NR [NR]	N
803	chr2	28635739	28635740	rs7562	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	2p23.2	FOSL2	rs7562-T	0.52	2E-8		0.263	[0.17-0.36] unit increase	Affymetrix [~ 9800000] (imputed)	N
803	chr2	28636739	28636740	rs2279990	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p23.2	NR	rs2279990-?	NR	3E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
803	chr2	28640326	28640327	rs2048240	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p23.2	FOSL2	rs2048240-C	0.5273	2E-12		0.2328	[0.17-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
803	chr2	28644669	28644670	rs7559046	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	2p23.2	FOSL2, PLB1	rs7559046-C	0.537	3E-13		0.031	[0.023-0.039] unit decrease	NR [NR] (imputed)	N
803	chr2	28644669	28644670	rs7559046	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2p23.2	FOSL2, PLB1	rs7559046-C	0.537	3E-13		0.031	[0.023-0.039] unit decrease	NR [7647814] (imputed)	N
803	chr2	28646800	28646801	rs6547853	21980299	Bradfield JP	2011-09-29	PLoS Genet	A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.	Type 1 diabetes	9,934 European ancestry cases, 16,956 European ancestry controls	1,120 European ancestry affected trios	2p23.2	FOSL2	rs6547853-?	0.60	8E-7		1.19	[NR]	Affymetrix, Illumina [~ 2540000] (imputed)	N
803	chr2	28646846	28646847	rs10210970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p23.2	NR	rs10210970-T	NR	1E-17		0.0301	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
803	chr2	28646846	28646847	rs10210970	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p23.2	NR	rs10210970-C	0.870513	8E-15		0.00928491	[0.0069-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
803	chr2	28646846	28646847	rs10210970	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p23.2	NR	rs10210970-C	0.870513	3E-9		0.00798562	[0.0053-0.0107] unit increase	Affymetrix [16582965] (imputed)	N
803	chr2	28647702	28647703	rs67385572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p23.2		rs67385572-?	NR	3E-8				NR [~ 8900000] (imputed)	N
803	chr2	28652528	28652529	rs4666076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p23.2	NR	rs4666076-A	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
803	chr2	28652528	28652529	rs4666076	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p23.2	NR	rs4666076-A	NR	5E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
803	chr2	28657895	28657896	rs1111336	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.2	FOSL2, PLB1	rs1111336-C	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
803	chr2	28657895	28657896	rs1111336	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p23.2	FOSL2, PLB1	rs1111336-C	NR	3E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
803	chr2	28657895	28657896	rs1111336	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.2	FOSL2, PLB1	rs1111336-C	NR	6E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
803	chr2	28657895	28657896	rs1111336	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p23.2	FOSL2, PLB1	rs1111336-C	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
803	chr2	28657895	28657896	rs1111336	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p23.2	FOSL2, PLB1	rs1111336-C	NR	3E-9	(EA)	0.02	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
803	chr2	28659533	28659534	rs62139588	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p23.2	FOSL2	rs62139588-?	NR	4E-8		1.074691	NR	Affymetrix [9154080] (imputed)	N
803	chr2	28684316	28684322	rs139949101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p23.2		rs139949101-A	NR	6E-28		0.0184	[0.015-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
803	chr2	28684931	28684932	rs2338016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p23.2		rs2338016-?	NR	6E-32				NR [~ 8900000] (imputed)	N
803	chr2	28685960	28685961	rs11127153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2p23.2	PLB1	rs11127153-A	0.4898	7E-9		0.02116714	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr2	28685960	28685961	rs11127153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2p23.2	PLB1	rs11127153-A	0.4899	6E-11		0.02389716	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr2	28685960	28685961	rs11127153	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2p23.2	PLB1	rs11127153-A	0.4899	2E-10		0.0231478	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr2	28686567	28686568	rs11695281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.2	NR	rs11695281-T	0.47283	2E-32				Affymetrix, Illumina [19872809] (imputed)	N
803	chr2	28686567	28686568	rs11695281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p23.2	NR	rs11695281-T	0.514407	4E-31		0.022977	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
803	chr2	28688519	28688520	rs11885668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p23.2	PLB1	rs11885668-T	0.218762	7E-24		0.026877128	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
803	chr2	28688519	28688520	rs11885668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p23.2	PLB1	rs11885668-T	0.218736	2E-24		0.027151855	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
803	chr2	28688519	28688520	rs11885668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2p23.2	PLB1	rs11885668-T	0.2189	3E-10		0.0273236	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
803	chr2	28688519	28688520	rs11885668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2p23.2	PLB1	rs11885668-T	0.219	6E-11		0.02829817	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr2	28713653	28713654	rs148259393	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	2p23.2	PLB1	rs148259393-G	0.0204	3E-6		0.1038	NR unit increase	NR [NR] (imputed)	N
804	chr2	28714652	28714653	rs11127159	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	2p23.2	NR	rs11127159-?	NR	6E-6		5.7823	[0.031-11.533] unit decrease	Illumina [at least 560000] (imputed)	N
804	chr2	28752726	28752727	rs6710800	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLB1	rs6710800-?	NR	4E-11	(male)	2.7371	[NR] unit decrease	Affymetrix [NR] (imputed)	N
804	chr2	28763923	28763924	rs11691383	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLB1	rs11691383-?	NR	1E-11		1.98526	[NR] unit decrease	Affymetrix [NR] (imputed)	N
804	chr2	28819825	28819826	rs55815151	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.2		rs55815151-?	NR	4E-13		0.0149854	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
805	chr2	28835876	28835877	rs13409705	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	2p23.2	PLB1, PPP1CB, SPDYA, TRMT61B	rs13409705-?	NR	9E-12				Affymetrix [up to 7325140] (imputed)	N
805	chr2	28838526	28838527	rs1534480	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive sweating	1,245 Japanese ancestry female cases, 3,293 Japanese ancestry female controls	NA	2p23.2	PLB1	rs1534480-T	0.14	8E-6		1.38	[1.20-1.60]	Affymetrix [536506]	N
805	chr2	28849434	28849435	rs10186023	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	2p23.2	PLB1	rs10186023-C	NR	5E-10	(male)	1.0413413	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
805	chr2	28853136	28853137	rs13028204	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	2p23.2	PLB1	rs13028204-?		2E-6	(French Canadians)	2.1938772		Illumina [7614484] (imputed)	N
805	chr2	28859978	28859979	rs10210444	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs10210444-A	NR	7E-9		1.0513		Affymetrix [9869154] (imputed)	N
805	chr2	28859978	28859979	rs10210444	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		PLB1	rs10210444-A	NR	1E-19		1.04	[1.03-1.05]	Affymetrix [9869154] (imputed)	N
805	chr2	28865100	28865101	rs34780912	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p23.2	PLB1	rs34780912-A	0.609827	1E-12		0.0135243	[0.0098-0.0173] unit decrease	NR [13737936] (imputed)	N
805	chr2	28881406	28881407	rs11127186	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p23.2		rs11127186-?	NR	9E-8		0.0110334	[0.007-0.0151] unit increase	NR [6912294] (imputed)	N
805	chr2	28881406	28881407	rs11127186	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p23.2		rs11127186-T	0.504205	2E-8		0.011	[0.0071-0.0149] unit increase	NR [7250403] (imputed)	N
805	chr2	28888956	28888957	rs56089836	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive sweating	1,245 Japanese ancestry female cases, 3,293 Japanese ancestry female controls	NA	2p23.2	PPP1CB	rs56089836-G	0.42	2E-11		1.4	[1.27-1.54]	Affymetrix [536506]	N
805	chr2	28892115	28892116	rs10192375	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.2	NR	rs10192375-G	0.492035	4E-9		0.0179373	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
805	chr2	28900769	28900770	rs899153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p23.2		rs899153-?	NR	2E-8				NR [~ 8900000] (imputed)	N
805	chr2	28906643	28906644	rs7586405	31729902	Penney KL	2019-11-15	J Urol	Genome-wide Association Study for Urinary and Fecal Incontinence in Women.	Fecal incontinence	4,247 European ancestry female cases, 11,634 European ancestry female controls	NA	2p23.2	NR	rs7586405-?	NR	3E-7				Affymetrix, Illumina [1410640] (imputed)	N
805	chr2	28917884	28917885	rs7594363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.2	NR	rs7594363-T	0.576773	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
805	chr2	28928736	28928737	rs113759014	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Pure non-grapefruit juice consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2p23.2	PPP1CB	rs113759014-T	0.0134	2E-7		0.0296	[0.018-0.041] unit increase	Affymetrix [~ 7740000] (imputed)	N
805	chr2	28937600	28937601	rs6547870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p23.2	NR	rs6547870-C	0.627903	9E-13		0.013608	[0.0099-0.0173] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
805	chr2	28937600	28937601	rs6547870	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.2		rs6547870-?	NR	3E-27		0.0222388	[0.018-0.026] unit increase	Affymetrix [20259828] (imputed)	N
805	chr2	28937600	28937601	rs6547870	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p23.2	PPP1CB	rs6547870-G	0.37056	4E-8	(women)	0.0251344	[0.016-0.034] unit increase	NR [17166351] (imputed)	N
805	chr2	28937600	28937601	rs6547870	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p23.2	PPP1CB	rs6547870-G	0.369217	1E-11		0.0235536	[0.017-0.03] unit increase	NR [17166351] (imputed)	N
805	chr2	28940153	28940154	rs56240884	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p23.2	PPP1CB	rs56240884-C	0.707622	1E-21		0.0195825	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
805	chr2	28940153	28940154	rs56240884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p23.2		rs56240884-?	NR	7E-25				NR [~ 8900000] (imputed)	N
805	chr2	28941149	28941150	rs12714240	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p23.2		rs12714240-?	NR	3E-28		0.0229243	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
805	chr2	28941261	28941262	rs13028787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p23.2	AC097724.3	rs13028787-T	0.651954	7E-10		0.014394326	[0.0098-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr2	28941261	28941262	rs13028787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p23.2	AC097724.3	rs13028787-T	0.65195	8E-11		0.015191015	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr2	28941261	28941262	rs13028787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.2	NR	rs13028787-T	0.614037	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
805	chr2	28941261	28941262	rs13028787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p23.2	NR	rs13028787-T	0.649757	2E-11		0.013671	[0.0097-0.0177] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
805	chr2	28963194	28963195	rs62129826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p23.2	AC097724.3	rs62129826-A	0.674974	6E-10		0.014748538	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
805	chr2	28965429	28965430	rs75657792	30369316	Low-Kam C	2018-08-01	J Am Heart Assoc	Variants at the APOE /C1/C2/C4 Locus Modulate Cholesterol Efflux Capacity Independently of High-Density Lipoprotein Cholesterol.	Cholesterol efflux capacity	3,487 French-Canadian ancestry cases, 1,806 French-Canadian ancestry controls	NA	2p23.2	PPP1CB/PLB1	rs75657792-G	0.977	8E-6		0.3361	[0.19-0.48] unit decrease	Illumina [at least 9000000] (imputed)	N
806	chr2	28973882	28973883	rs4372836	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p23.2	NA	rs4372836-T	0.3259	7E-13		0.0125	[0.0092-0.0158] unit increase	NR [~ 27400000] (imputed)	N
806	chr2	28973882	28973883	rs4372836	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.2	PPP1CB	rs4372836-T	0.309	9E-7		0.016	[0.0092-0.0218] kg/m2 increase	Affymetrix, Illumina [2550021]	N
806	chr2	28976081	28976081	rs11410668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p23.2		rs11410668-TC	NR	1E-13		0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
806	chr2	28976081	28976081	rs11410668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p23.2		rs11410668-TC	NR	3E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
806	chr2	28978073	28978074	rs6547872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p23.2	NR	rs6547872-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
806	chr2	28978073	28978074	rs6547872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p23.2		rs6547872-?	NR	7E-11				NR [~ 8900000] (imputed)	N
806	chr2	28996294	28996295	rs7579277	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p23.2	NA	rs7579277-A	0.6674	4E-12		0.0125	[0.009-0.016] unit decrease	NR [~ 27400000] (imputed)	N
806	chr2	29009088	29009089	rs4477866	32970232	Zhang YX	2020-09-24	Mol Genet Genomics	Three pleiotropic loci associated with bone mineral density and lean body mass.	Bone mineral density	9,618 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	up to 500,000 European ancestry individuals	2p23.2	NR	rs4477866-C	0.43	2E-13		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [12061510] (imputed)	N
806	chr2	29011086	29011087	rs10182825	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2p23.2	PPP1CB	rs10182825-A	0.079	4E-19		0.39	[0.3-0.47] unit decrease	Affymetrix [339439]	N
806	chr2	29040869	29040869	rs61620093	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Bone mineral density	14,489 individuals	217,822 individuals	2p23.2		rs61620093-?	NR	3E-7		0.029	[0.017-0.041] unit increase	NR [6879267]	N
806	chr2	29040869	29040869	rs61620093	31903547	Pei YF	2020-01-05	Clin Genet	Bivariate genome-wide association analysis identified three pleiotropic loci underlying osteoporosis and obesity.	Body mass index and bone mineral density (pleiotropy)	14,489 individuals	217,822 individuals	2p23.2		rs61620093-?		2E-7		0.2	[0.19-0.21] unit increase	NR [6879267]	N
806	chr2	29070804	29070805	rs6737027	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p23.2	NR	rs6737027-?	NR	8E-8				Affymetrix [NR]	N
806	chr2	29075030	29075031	rs11690571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p23.2		rs11690571-T	NR	3E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
806	chr2	29075030	29075031	rs11690571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p23.2		rs11690571-T	NR	2E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
806	chr2	29075030	29075031	rs11690571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p23.2		rs11690571-T	NR	8E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
806	chr2	29075030	29075031	rs11690571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p23.2		rs11690571-?	NR	2E-14				NR [~ 8900000] (imputed)	N
806	chr2	29075165	29075166	rs200334508	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2p23.2		rs200334508-?	NR	4E-6		1.9607843	[1.41-2.7]	Illumina [6778521] (imputed)	N
806	chr2	29082135	29082136	rs147972440	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p23.2	TRMT61B	rs147972440-G	0.8652	5E-8		0.109	[0.069-0.149] unit decrease	Affymetrix [~ 11900000] (imputed)	N
806	chr2	29088337	29088338	rs10179580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p23.2		rs10179580-?	NR	6E-8				NR [~ 8900000] (imputed)	N
807	chr2	29100641	29100642	rs4358081	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p23.2		rs4358081-A	0.5285	1E-11		0.0095	[0.0068-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
807	chr2	29100645	29100646	rs4289133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p23.2	Intergenic	rs4289133-A	0.4739	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
807	chr2	29119584	29119585	rs67073037	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2p23.2	WDR43	rs67073037-?	0.76	3E-6		1.0869565	[1.05-1.14]	Illumina [10909381] (imputed)	N
807	chr2	29119584	29119585	rs67073037	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	2p23.2	WDR43	rs67073037-?	0.8	5E-9		1.0869565	[1.04-1.15] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
807	chr2	29120732	29120733	rs4577244	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2p23.2	WDR43	rs4577244-C	0.659999999999999	2E-9		1.0869565	[1.05-1.11]	Illumina [~ 11500000] (imputed)	N
807	chr2	29130780	29130780	rs10676256	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	2p23.2	NR	rs10676256-CA	0.2041	5E-6		1.051	[0.59-1.51] unit increase	Illumina [at least 567677] (imputed)	N
807	chr2	29171803	29171804	rs6757653	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	2p23.2	WDR43	rs6757653-T	0.274	9E-16		0.032	[0.024-0.039] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
807	chr2	29201261	29201262	rs116739666	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p23.2	FAM179A	rs116739666-G	0.0534	6E-6		2.016	[1.488-2.731]	Affymetrix, Illumina [14074516] (imputed)	N
807	chr2	29213560	29213561	rs11127199	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	2p23.2	FAM179A	rs11127199-G	0.6335	7E-6		11.445	[6.82-16.07] unit increase	Illumina [~ 6000000] (imputed)	N
808	chr2	29247996	29247997	rs13008299	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Diastolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	2p23.2	FAM179A	rs13008299-G	0.29	7E-8	(drinks/week)	0.068	[0.033-0.103] unit decrease	Affymetrix [2500000] (imputed)	N
808	chr2	29280760	29280761	rs882632	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	2p23.2	FAM179A, C2orf71	rs882632-T	0.29	2E-6		1.34		Affymetrix [671424]	N
808	chr2	29297757	29297758	rs17007554	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	2p23.2	C2orf71	rs17007554-C	0.757594589	3E-6		1.2231709	[1.12-1.33]	Illumina [10439017] (imputed)	N
808	chr2	29320447	29320448	rs71444409	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.2	NR	rs71444409-T	0.0122	3E-9	(DCN)	0.06042	NR unit increase	Illumina [1671387] (imputed)	N
809	chr2	29391265	29391266	rs72790254	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p23.2	NR	rs72790254-?	NR	4E-7		5.073	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
809	chr2	29472935	29472936	rs10197179	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Microscopic brain infarct	253 European ancestry cases, 656 European ancestry controls	369 individuals	2p23.2	NR	rs10197179-T	0.9	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
810	chr2	29513403	29513404	rs72790288	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p23.2	NR	rs72790288-A	0.0282	2E-11		0.0224741	[0.016-0.029] unit decrease	NR [9732723] (imputed)	N
810	chr2	29513403	29513404	rs72790288	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p23.2	NR	rs72790288-A	0.0282	3E-9		0.04553178	[0.03-0.061] unit decrease	NR [~ 10000000] (imputed)	N
810	chr2	29538859	29538860	rs2339469	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	2p23.2	ALK	rs2339469-?	NR	1E-6	(Female, Pre-puberty)	0.102	[0.061-0.142] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
810	chr2	29572298	29572299	rs12996631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p23.2	Intergenic	rs12996631-A	0.6054	2E-10	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
810	chr2	29574874	29574875	rs13029602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p23.2		rs13029602-T	0.6059	1E-10		0.0092	[0.0065-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
810	chr2	29574874	29574875	rs13029602	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels (BMI-adjusted)	737 European ancestry females	NA	2p23.2	ALK	rs13029602-?	NR	7E-6				Illumina [up to 550000]	N
810	chr2	29583320	29583321	rs1406230	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	2p23.2	NR	rs1406230-?	NR	5E-7		1.4444604	[1.25-1.67]	Affymetrix, Illumina [6717712] (imputed)	N
810	chr2	29589349	29589350	rs13429710	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	2p23.2		rs13429710-T	NR	6E-6		0.31841	[0.18-0.45] unit decrease	Illumina [NR] (imputed)	N
810	chr2	29592459	29592460	rs11903143	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	2p23.2	NR	rs11903143-G		6E-7		0.087	[0.053-0.121] SD units decrease	NR [10700000] (imputed)	N
810	chr2	29604976	29604977	rs7608573	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	2p23.2	ALK	rs7608573-T	NR	4E-6		1.78	unit increase	Illumina [6778521] (imputed)	N
810	chr2	29616654	29616655	rs80270335	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2p23.2	ALK	rs80270335-T	0.09	2E-9		0.027	[0.018-0.036] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
810	chr2	29616654	29616655	rs80270335	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2p23.2	ALK	rs80270335-T	0.09	6E-8		0.051	[0.033-0.069] unit increase	Affymetrix [at least 8900000] (imputed)	N
811	chr2	29677930	29677931	rs11680717	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.2	CLIP4	rs11680717-?	NR	8E-7	(argininosuccinate)	0.832219	[0.5-1.16] unit increase	Affymetrix [at least 2500000] (imputed)	N
811	chr2	29705019	29705020	rs4299297	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	2p23.2		rs4299297-C	NR	7E-6		0.13716	[0.079-0.195] unit increase	Illumina [NR] (imputed)	N
811	chr2	29733800	29733801	rs6719507	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p23.2	ALK	rs6719507-G	0.558383	3E-8		0.00781795	[0.0051-0.0106] unit increase	Affymetrix [12370749]	N
811	chr2	29743732	29743733	rs7578465	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p23.2	ALK	rs7578465-T	0.455	8E-6	(EA, men)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
812	chr2	29762846	29762847	rs77972798	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.2	NR	rs77972798-A	0.03136	1E-8	(GALE)	0.1049	NR unit increase	Illumina [1671387] (imputed)	N
812	chr2	29801648	29801649	rs4665470	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.2	CLIP4	rs4665470-?	NR	6E-6	(TAG 56:5)	0.2476407	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
812	chr2	29818290	29818291	rs187926838	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced serious cutaneous adverse reaction	43 European ancestry cases, 10,701 European ancestry controls	NA	2p23.2	ALK	rs187926838-G	0.007	5E-8		12.1	[4.94-29.8]	Illumina [5271349] (imputed)	N
812	chr2	29818290	29818291	rs187926838	31066027	Nicoletti P	2019-05-07	Clin Pharmacol Ther	Shared genetic risk factors across carbamazepine-induced hypersensitivity reactions.	Carbamazepine-induced reaction with eosinophilia and systemic symptoms	25 European ancestry cases, 10,701 European ancestry controls	NA	2p23.2	ALK	rs187926838-?	NR	1E-6		18.2	[5.2-63.72]	Illumina [5271349] (imputed)	N
813	chr2	29973280	29973281	rs13411840	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	2p23.2		rs13411840-?	NR	6E-7				Illumina [3311160] (imputed)	N
813	chr2	29973280	29973281	rs13411840	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p23.2	ALK	rs13411840-?		3E-6	(SI+M)	0.28	[-0.0336-0.5936] unit decrease	Illumina [693128]	N
814	chr2	30026988	30026989	rs6731759	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2p23.1	ALK	rs6731759-G	0.443	7E-18		0.2	[0.16-0.25] unit increase	Affymetrix [339439]	N
814	chr2	30051363	30051364	rs62131018	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	2p23.1	ALK	rs62131018-?	NR	5E-6		1.99	[1.46-2.71]	Illumina [654642] (imputed)	N
814	chr2	30106538	30106539	rs4535004	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	2p23.1	ALK	rs4535004-?	NA	8E-6		0.326	[0.18-0.47] unit increase	Illumina [6690240] (imputed)	N
816	chr2	30291455	30291456	rs1447523	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2p23.1	YPEL5	rs1447523-?	NR	1E-8		0.006873	[0.0028-0.011] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
817	chr2	30429329	30429330	rs6707974	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	2p23.1	NR	rs6707974-G		8E-6		0.1508	[0.085-0.217] SD units decrease	NR [10700000] (imputed)	N
817	chr2	30429734	30429735	rs4952108	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	2p23.1	LBH	rs4952108-C	0.81	5E-8		1.28	NR	Illumina [1143634] (imputed)	N
817	chr2	30438839	30438840	rs11901428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p23.1		rs11901428-?	NR	2E-9				NR [~ 8900000] (imputed)	N
817	chr2	30445025	30445026	rs7579944	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2p23.1	LBH	rs7579944-T	0.62	1E-20		0.876	[0.85-0.9]	Illumina [11270530] (imputed)	N
817	chr2	30445025	30445026	rs7579944	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2p23.1	LBH	rs7579944-?	NR	5E-8		1.1111112	[1.08-1.16]	Illumina [at least 5000000] (imputed)	N
817	chr2	30445025	30445026	rs7579944	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p23.1	LBH	rs7579944-C	0.634	1E-9		1.1111112	[1.08-1.15]	NR [6344733] (imputed)	N
817	chr2	30445025	30445026	rs7579944	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p23.1	LBH	rs7579944-C	0.359	6E-6	(Chinese)	1.1494253	[1.09-1.22]	NR [6344733] (imputed)	N
817	chr2	30445025	30445026	rs7579944	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2p23.1	LBH, YPEL5	rs7579944-?	NR	2E-8		1.08		Illumina [109572]	N
817	chr2	30445025	30445026	rs7579944	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2p23.1	LBH	rs7579944-G	0.64	4E-9		1.1	[1.07-1.14]	Illumina [133816] (imputed)	N
817	chr2	30445025	30445026	rs7579944	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	2p23.1	LBH	rs7579944-?	NR	1E-8				Illumina [472854]	N
817	chr2	30445321	30445322	rs1355208	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2p23.1		rs1355208-A	NR	7E-12		0.92	[0.9-0.94]	NR [13810676] (imputed)	N
817	chr2	30446082	30446083	rs1396836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p23.1	NR	rs1396836-C	0.757453	1E-10		0.014813	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
817	chr2	30449593	30449594	rs10175798	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p23.1	LBH	rs10175798-A	NR	3E-9		0.0838897	[0.056-0.111] unit increase	Illumina [8380626] (imputed)	N
817	chr2	30449593	30449594	rs10175798	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p23.1	LBH	rs10175798-A	0.62	1E-7	(EA)	0.0882	[0.055-0.121] unit increase	Illumina [8380626] (imputed)	N
817	chr2	30449593	30449594	rs10175798	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p23.1	LBH	rs10175798-A	0.62	4E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
817	chr2	30449593	30449594	rs10175798	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p23.1	LBH	rs10175798-A	0.54	1E-9		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
817	chr2	30470177	30470178	rs2089657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	2p23.1		rs2089657-T	NR	1E-12		0.0954	[0.069-0.122] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
817	chr2	30470177	30470178	rs2089657	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	2p23.1	NR	rs2089657-T	0.21	2E-8		0.104	[0.067-0.141] unit decrease	Affymetrix [10972371] (imputed)	N
817	chr2	30472441	30472442	rs13414105	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p23.1	LBH	rs13414105-C	NR	7E-10		1.0912	NR	Affymetrix, Illumina [8278136] (imputed)	N
817	chr2	30474350	30474351	rs72787718	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2p23.1	LBH	rs72787718-A	0.23	8E-9				NR [> 9500000] (imputed)	N
817	chr2	30474358	30474359	rs72787719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.1	LBH	rs72787719-A	0.208459	2E-9		0.01640239	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr2	30474514	30474515	rs73925103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.1	LBH	rs73925103-C	0.208893	4E-10		0.016929137	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr2	30475152	30475153	rs11127261	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p23.1	LBH	rs11127261-?		2E-20				Affymetrix, Illumina [NR] (imputed)	N
817	chr2	30475237	30475238	rs11690883	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p23.1	NR	rs11690883-T		9E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
817	chr2	30478452	30478453	rs2362541	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p23.1	LBH	rs2362541-T	0.492483	1E-8		0.0108519	[0.0071-0.0146] unit increase	Affymetrix [NR] (imputed)	N
817	chr2	30479856	30479857	rs17321999	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p23.1	LBH	rs17321999-C	0.790317	5E-10		0.0149183	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
817	chr2	30479856	30479857	rs17321999	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p23.1	LBH	rs17321999-C	0.836	1E-8	(Chinese)	1.2195122	[1.14-1.3]	NR [6344733] (imputed)	N
817	chr2	30479856	30479857	rs17321999	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p23.1	LBH	rs17321999-C	0.809	2E-9	(EA)	1.1904762	[1.12-1.27]	NR [6344733] (imputed)	N
817	chr2	30479856	30479857	rs17321999	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p23.1	LBH	rs17321999-C	0.809	2E-16		1.2048193	[1.15-1.27]	NR [6344733] (imputed)	N
817	chr2	30481916	30481917	rs9558	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p23.1	NR	rs9558-A	0.205199	2E-11		0.015389	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
817	chr2	30491176	30491177	rs72787723	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2p23.1		rs72787723-?	NR	9E-9				Illumina [1128286]	N
817	chr2	30491391	30491392	rs17009315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p23.1	NR	rs17009315-G	0.230368	4E-11		0.014442	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
817	chr2	30491391	30491392	rs17009315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p23.1	NR	rs17009315-G	0.23023	9E-11		0.014124	[0.0099-0.0184] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
817	chr2	30491391	30491392	rs17009315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p23.1	NR	rs17009315-G	0.23019	6E-11		0.014275	[0.01-0.0186] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
817	chr2	30491391	30491392	rs17009315	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2p23.1	LBH	rs17009315-G	0.231479	2E-8		1.0405449	[1.02615497210148-1.05513661367178]	NR [9572556] (imputed)	N
817	chr2	30494171	30494172	rs17322090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p23.1		rs17322090-T	NR	1E-8		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
817	chr2	30497631	30497632	rs72787730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.1	LBH	rs72787730-C	0.128603	2E-10		0.021174723	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr2	30498652	30498653	rs13406665	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p23.1	NR	rs13406665-?	NR	3E-6	(Japanese)	0.4538	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
817	chr2	30520161	30520162	rs72787764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p23.1		rs72787764-?	NR	2E-8				NR [~ 8900000] (imputed)	N
817	chr2	30526779	30526780	rs6708166	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	2p23.1	LBH	rs6708166-A	0.40	1E-6	(FVIII activity)	0.17	[0.09-0.25] IU/dL decrease	Illumina [442728]	N
818	chr2	30591967	30591968	rs13022414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p23.1		rs13022414-?	NR	3E-34				NR [~ 8900000] (imputed)	N
818	chr2	30591967	30591968	rs13022414	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.1	NR	rs13022414-A	0.243378	2E-29		0.0404098	[0.033-0.047] unit increase	NR [19129689] (imputed)	N
818	chr2	30622823	30622824	rs114997855	26307654	Szulkin R	2015-08-25	Cancer Epidemiol Biomarkers Prev	Genome-wide association study of prostate cancer-specific survival.	Prostate cancer (survival)	7,322 cases	18,197 European ancestry cases	2p23.1	NR	rs114997855-A	0.02	1E-7		1.67	[1.38-2.03]	Affymetrix, Illumina [up to 9536409] (imputed)	N
818	chr2	30626422	30626423	rs844193	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	NR	rs844193-T	NR	2E-8		0.0410187	NR unit increase	NR [NR] (imputed)	N
818	chr2	30641233	30641234	rs829593	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2p23.1	NR	rs829593-G	0.6868920000000001	2E-8		0.0177819	[0.011-0.024] unit increase	Affymetrix [16577424] (imputed)	N
818	chr2	30664110	30664111	rs13395754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p23.1		rs13395754-G	NR	6E-10		0.0132	[0.0091-0.0173] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
819	chr2	30677274	30677275	rs829584	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p23.1	LCLAT1	rs829584-A	0.7594	2E-18		0.00232604	[0.0018-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
819	chr2	30680449	30680450	rs829577	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p23.1	LCLAT1	rs829577-C	0.76	1E-14		7.72	z-score increase	Affymetrix [4311822] (imputed)	N
819	chr2	30682469	30682470	rs55723517	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	2p23.1		rs55723517-T	0.2437	4E-6		0.495	[0.3667-0.6681]	Illumina [7778465] (imputed)	N
819	chr2	30695755	30695756	rs829562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p23.1		rs829562-C	NR	5E-17		0.0191	[0.015-0.024] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
819	chr2	30726690	30726691	rs829661	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	2p23.1	LCLAT1	rs829661-?		2E-7	(BDE-100)	0.37	[0.23-0.51] unit increase	Affymetrix [629686]	N
819	chr2	30737800	30737801	rs829636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p23.1		rs829636-?	NR	6E-9				NR [~ 8900000] (imputed)	N
819	chr2	30753001	30753002	rs17322932	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.1	NR	rs17322932-G	0.02091	3E-9	(CYB5R3)	0.08382	NR unit increase	Illumina [1671387] (imputed)	N
819	chr2	30778583	30778584	rs28538173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p23.1		rs28538173-?	NR	3E-9				NR [~ 8900000] (imputed)	N
820	chr2	30861923	30861924	rs13405340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p23.1		rs13405340-?	NR	5E-8				NR [~ 8900000] (imputed)	N
820	chr2	30888923	30888924	rs12464483	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	2p23.1	NR	rs12464483-A	0.15	2E-6		1.7	[1.37-2.12]	Illumina [714494]	N
821	chr2	30986744	30986745	rs78355147	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p23.1	NR	rs78355147-?	NR	5E-7	(Latino)	0.9913	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
821	chr2	30992857	30992858	rs115354913	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2p23.1	CAPN13	rs115354913-A	0.03	9E-6		2.27	[1.27-3.27] g/day increase	Affymetrix [10353649] (imputed)	N
822	chr2	31068018	31068019	rs12613372	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	2p23.1	GALNT14, CAPN13	rs12613372-G	0.07	2E-7	(AA)	1.24	[1.14-1.34]	Affymetrix, Illumina [2579389] (imputed)	N
822	chr2	31094244	31094245	rs2216824	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	2p23.1	LOC105374446	rs2216824-A	0.0907245595473838	3E-6		1.3186		Illumina [7574753] (imputed)	N
822	chr2	31098064	31098065	rs4318431	32276964	Shete S	2020-04-10	Cancer Res	A genome-wide association study identifies two novel susceptible regions for squamous cell carcinoma of the head and neck.	Oropharynx cancer	1,144 European ancestry cases, 4,493 European ancestry controls	2,328 European ancestry cases, 3,232 European ancestry controls	2p23.1	GALNT14	rs4318431-T	0.08	3E-9		1.39	[1.25-1.55]	Illumina [7858089] (imputed)	N
822	chr2	31106054	31106055	rs144125291	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	2p23.1	GALNT14	rs144125291-T	0.07	8E-9		5.45	[2.87-10.33]	Affymetrix [583535] (imputed)	N
822	chr2	31112299	31112300	rs6743333	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA9475 sp002161235 abundance in stool	5,959 Finnish ancestry individuals	NA	2p23.1		rs6743333-A	0.194071	3E-8		0.0474992	[0.031-0.064] unit decrease	Illumina [7980478] (imputed)	N
822	chr2	31118598	31118599	rs17393065	30120336	Kikuchi M	2018-08-17	Sci Rep	Genome-wide Association Analysis of Eye Movement Dysfunction in Schizophrenia.	Eye movement (horizontal position gain)	166 Japanese ancestry individuals	NA	2p23.1	GALNT14	rs17393065-?	NR	3E-9		0.149	[NR] unit decrease	Affymetrix [554152]	N
822	chr2	31160871	31160872	rs73921200	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p23.1	NR	rs73921200-G	0.0122	1E-8	(RAB14)	0.0248	NR unit increase	Illumina [1671387] (imputed)	N
823	chr2	31314554	31314555	rs1000916	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	2p23.1	GALNT14	rs1000916-?	NR	9E-6				Illumina [990115]	N
824	chr2	31353028	31353029	rs7604882	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p23.1	EHD3	rs7604882-?	NR	7E-6	(dimethylglycine)	3.0246174	[1.7-4.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
824	chr2	31376653	31376654	rs6543610	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	2p23.1	intergenic	rs6543610-C	0.02	1E-7			[NR]	Affymetrix [398699]	N
824	chr2	31384828	31384829	rs77007265	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (L. iners)	171 Kenyan ancestry individuals	NA	2p23.1	GALNT14, CAPN14	rs77007265-C	0.08	2E-6		0.93	NR unit decrease	Illumina [336151] (imputed)	N
824	chr2	31384973	31384974	rs17010778	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (L. iners)	171 Kenyan ancestry individuals	NA	2p23.1	GALNT14, CAPN14	rs17010778-C	0.06	4E-6		1.0	NR unit decrease	Illumina [336151] (imputed)	N
824	chr2	31402369	31402370	rs143457388	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	2p23.1	CAPN14	rs143457388-A	0.047	3E-16		1.77	[1.54-2.03]	Illumina [11310926] (imputed)	N
824	chr2	31402406	31402407	rs149864795	25407941	Sleiman PM	2014-11-19	Nat Commun	GWAS identifies four novel eosinophilic esophagitis loci.	Eosinophilic esophagitis	603 European ancestry cases, 3,637 European ancestry controls	333 European ancestry cases, 675 European ancestry controls	2p23.1	CAPN14	rs149864795-A	0.052	5E-10		2.216	[1.97-2.47]	Illumina [~ 2300000] (imputed)	N
824	chr2	31403034	31403035	rs567885099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p23.1	CAPN14	rs567885099-C	2.78E-4	2E-12		0.49294427	[0.36-0.63] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr2	31411286	31411287	rs77569859	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	2p23.1	CAPN14	rs77569859-G	0.05	3E-10		1.98	[NR]	Illumina [1468075]	N
824	chr2	31425184	31425185	rs116175374	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Endometriosis	3,194 European ancestry cases, 7,060 European ancestry controls.	NA	2p23.1	CAPN14	rs116175374-?	NR	6E-7		1.4492754	[1.23-1.69]	Illumina [NR] (imputed)	N
824	chr2	31442621	31442622	rs7585737	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2p23.1	CAPN14	rs7585737-T	0.405124	3E-6		1.204	[1.113 - 1.303]	Illumina [5397657] (imputed)	N
824	chr2	31457154	31457167	rs144609065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p23.1	EHD3	rs144609065-G	0.698828	1E-15		0.019789021	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr2	31457154	31457167	rs144609065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p23.1	EHD3	rs144609065-G	0.698828	8E-12		0.016965834	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr2	31457154	31457167	rs144609065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p23.1	EHD3	rs144609065-G	0.698841	1E-16		0.020393934	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
824	chr2	31457154	31457167	rs144609065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p23.1	EHD3	rs144609065-G	0.698838	4E-14		0.018663403	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31457980	31457981	rs4952073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p23.1		rs4952073-C	NR	2E-11		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
825	chr2	31457980	31457981	rs4952073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p23.1	EHD3	rs4952073-T	0.297013	3E-14		0.018580794	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31457980	31457981	rs4952073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.1		rs4952073-?	NR	2E-11				NR [~ 8900000] (imputed)	N
825	chr2	31457980	31457981	rs4952073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p23.1		rs4952073-?	NR	1E-8				NR [~ 8900000] (imputed)	N
825	chr2	31459743	31459744	rs1540926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.1	EHD3	rs1540926-T	0.578195	5E-15		0.01769976	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31459968	31459969	rs3820924	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2p23.1		rs3820924-C	0.422	6E-12				Affymetrix [10369434] (imputed)	N
825	chr2	31463043	31463044	rs633323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.1	EHD3	rs633323-T	0.697338	8E-12		0.016542163	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31463043	31463044	rs633323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p23.1	NR	rs633323-T	0.697278	1E-14		0.016156	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
825	chr2	31463849	31463850	rs647137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.1	NR	rs647137-A	0.724068	2E-12				Affymetrix, Illumina [23114412] (imputed)	N
825	chr2	31463865	31463866	rs632964	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	2p23.1		rs632964-?	0.2823	4E-9		0.003068	unit increase	NR [6200000] (imputed)	N
825	chr2	31463865	31463866	rs632964	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	2p23.1		rs632964-?	0.2823	2E-13		0.009034	unit increase	NR [6200000] (imputed)	N
825	chr2	31463865	31463866	rs632964	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	2p23.1		rs632964-?	0.2823	2E-9		0.009064	unit increase	NR [6200000] (imputed)	N
825	chr2	31464384	31464385	rs649729	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p23.1	EHD3	rs649729-A	0.6969	9E-11		0.02521163	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31464384	31464385	rs649729	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p23.1	EHD3	rs649729-A	0.6969	6E-11		0.02540754	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31464384	31464385	rs649729	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p23.1	EHD3	rs649729-A	0.6969	3E-9		0.02308318	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31464384	31464385	rs649729	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	2p23.1	EHD3	rs649729-A	NR	4E-6		0.07	[NR] unit decrease	Illumina [476395]	N
825	chr2	31464384	31464385	rs649729	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	2p23.1	EHD3	rs649729-T	NR	1E-12		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr2	31464828	31464829	rs647316	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	2p23.1	EHD3	rs647316-A	NR	3E-11		0.01	[0.006-0.014] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.00556100000000004	2E-9		0.1033785	[0.07-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.005602	4E-50		0.2602731	[0.23-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.00556000000000001	4E-12		0.119970754	[0.086-0.154] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.00555399999999995	6E-17		0.14461246	[0.11-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.00560400000000005	2E-29		0.19665605	[0.16-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p23.1	EHD3	rs146859437-C	0.00556199999999996	3E-12		0.120811306	[0.087-0.155] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31470439	31470440	rs146859437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2p23.1	EHD3	rs146859437-C	0.0055	9E-15		0.2324107	[0.17-0.29] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31474241	31474242	rs597800	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	2p23.1	EHD3	rs597800-C	0.15	5E-7		0.148	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
825	chr2	31474486	31474487	rs609316	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	2p23.1		rs609316-?	0.3301	2E-8		0.002843	unit increase	NR [6200000] (imputed)	N
825	chr2	31474486	31474487	rs609316	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	2p23.1		rs609316-?	0.3301	4E-13		0.008685	unit increase	NR [6200000] (imputed)	N
825	chr2	31474486	31474487	rs609316	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	2p23.1		rs609316-?	0.3301	7E-10		0.009127	unit increase	NR [6200000] (imputed)	N
825	chr2	31476770	31476771	rs184409696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p23.1		rs184409696-C	NR	9E-9		0.0863	[0.057-0.116] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
825	chr2	31476770	31476771	rs184409696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p23.1		rs184409696-C	NR	2E-21		0.1388	[0.11-0.17] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p23.1	EHD3	rs184409696-C	0.00737500000000002	1E-13		0.103477836	[0.076-0.131] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p23.1	EHD3	rs184409696-C	0.00737399999999999	2E-10		0.0895329	[0.062-0.117] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p23.1	EHD3	rs184409696-C	0.00737399999999999	4E-23		0.13818306	[0.11-0.17] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.1	NR	rs184409696-G	0.992492	5E-13				Affymetrix, Illumina [24649327] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p23.1	NR	rs184409696-G	0.992301	1E-14		0.089621	[0.067-0.112] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.1	NR	rs184409696-G	0.992522	3E-29				Affymetrix, Illumina [23467995] (imputed)	N
825	chr2	31476770	31476771	rs184409696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p23.1	NR	rs184409696-G	0.992319	4E-31		0.136605	[0.11-0.16] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
825	chr2	31476770	31476771	rs184409696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.1		rs184409696-?	NR	1E-11				NR [~ 8900000] (imputed)	N
825	chr2	31477837	31477838	rs655029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p23.1		rs655029-A	NR	3E-189		0.0718	[0.067-0.077] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
825	chr2	31477837	31477838	rs655029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2p23.1		rs655029-A	0.955793	3E-9		0.0480612	[0.032-0.064] unit increase	Illumina [13478928] (imputed)	N
825	chr2	31477837	31477838	rs655029	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2p23.1		rs655029-G	0.291	5E-52				Affymetrix [10369434] (imputed)	N
825	chr2	31477837	31477838	rs655029	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p23.1		rs655029-G	0.291	7E-111				Affymetrix [10369434] (imputed)	N
825	chr2	31477837	31477838	rs655029	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	2p23.1		rs655029-A	0.1709	5E-8		0.0699	[0.045-0.095] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p23.1	EHD3	rs655029-A	0.710996	2E-40		0.033452433	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p23.1	EHD3	rs655029-A	0.711009	2E-587		0.13002008	[0.13-0.13] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p23.1	EHD3	rs655029-A	0.711013	9E-166		0.06881043	[0.064-0.074] unit increase	Affymetrix [93095623] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p23.1	EHD3	rs655029-A	0.710977	2E-236		0.08202229	[0.077-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.1	NR	rs655029-A	0.766177	2E-267				Affymetrix, Illumina [24588908] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p23.1	NR	rs655029-A	0.71241	3E-256		0.070139	[0.066-0.074] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p23.1	NR	rs655029-G	0.282754	1E-354				Affymetrix, Illumina [17210439] (imputed)	N
825	chr2	31477837	31477838	rs655029	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p23.1	NR	rs655029-G	0.289361	5E-352		0.085461	[0.081-0.09] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
825	chr2	31477837	31477838	rs655029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	2p23.1		rs655029-?	0.2855	1E-8		0.00302	unit increase	NR [6200000] (imputed)	N
825	chr2	31477837	31477838	rs655029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	2p23.1		rs655029-?	0.2855	2E-14		0.009569	unit increase	NR [6200000] (imputed)	N
825	chr2	31477837	31477838	rs655029	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	2p23.1		rs655029-?	0.2855	2E-9		0.009255	unit increase	NR [6200000] (imputed)	N
825	chr2	31477837	31477838	rs655029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p23.1	EHD3	rs655029-A	0.7118	1E-18		0.0360763	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31477837	31477838	rs655029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2p23.1	EHD3	rs655029-A	0.7119	2E-225		0.1286083	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31477837	31477838	rs655029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p23.1	EHD3	rs655029-A	0.7113	9E-73		0.07349026	[0.066-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31477837	31477838	rs655029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p23.1	EHD3	rs655029-A	0.7118	8E-109		0.08953487	[0.082-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
825	chr2	31482299	31482300	rs625132	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	2p23.1	EHD3	rs625132-G	NR	9E-14		4.236	[3.12-5.35] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr2	31508998	31508999	rs77781418	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	NR	rs77781418-A	NR	1E-12		0.126739	NR unit decrease	NR [NR] (imputed)	N
825	chr2	31540025	31540026	rs45531033	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2p23.1		rs45531033-?	NR	4E-11				Illumina [1128286]	N
825	chr2	31564243	31564244	rs139515054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p23.1	NR	rs139515054-G	NR	3E-9		0.1101	[0.074-0.147] unit decrease	Affymetrix [9000000] (imputed)	N
825	chr2	31564549	31564550	rs45573441	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	2p23.1	NR	rs45573441-T	NR	6E-6		0.4917	NR	Illumina [at least 560000] (imputed)	N
825	chr2	31568725	31568726	rs9308919	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		XDH	rs9308919-?	NR	3E-6	(female)	0.288373	[NR] unit increase	Affymetrix [NR] (imputed)	N
825	chr2	31576911	31576912	rs115903524	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	2p23.1	XDH	rs115903524-C	0.03	6E-6		1.9607843		Illumina [4903804] (imputed)	N
825	chr2	31587510	31587511	rs994727	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p23.1	XDH	rs994727-?		1E-6				Illumina [4322238] (imputed)	N
826	chr2	31590784	31590785	rs761926	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p23.1	XDH	rs761926-G	0.37	4E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
826	chr2	31609941	31609942	rs77775907	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	2p23.1	NR	rs77775907-G	0.96	7E-18		1.36	NR	NR [8853336] (imputed)	N
826	chr2	31609941	31609942	rs77775907	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	EHD3, SRD5A2, XDH	rs77775907-A	NR	3E-24		0.165209	NR unit decrease	NR [NR] (imputed)	N
826	chr2	31610290	31610291	rs113923480	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	XDH	rs113923480-T	NR	5E-24		0.164551	NR unit decrease	NR [NR] (imputed)	N
826	chr2	31610700	31610701	rs45575032	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p23.1	XDH	rs45575032-T	0.0281	9E-6		0.0796	[0.044-0.115] unit increase	Affymetrix, Illumina [NR] (imputed)	N
826	chr2	31611028	31611029	rs2073316	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p23.1	NR	rs2073316-G		7E-7		0.116	[0.07-0.162] SD units decrease	NR [10700000] (imputed)	N
826	chr2	31640454	31640455	rs7575607	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p23.1	NR	rs7575607-?		1E-6	(IL18)	0.2358	[NR] unit decrease	Illumina [NR]	N
826	chr2	31645291	31645292	rs206817	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	2p23.1		rs206817-?	NR	6E-6		0.3798166	[0.22-0.54] unit increase	Illumina [9906551] (imputed)	N
826	chr2	31663113	31663114	rs62141163	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	2p23.1	XDH	rs62141163-A	0.106145	2E-7		0.341415	[0.21-0.47] unit increase	NR [7263501] (imputed)	N
826	chr2	31700392	31700393	rs60989770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p23.1		rs60989770-?	NR	1E-8				NR [~ 8900000] (imputed)	N
826	chr2	31708615	31708616	rs206833	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	2p23.1	XDH	rs206833-A	0.165738	3E-7		0.25726	[0.16-0.36] unit increase	NR [7263501] (imputed)	N
827	chr2	31782279	31782280	rs2268796	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p23.1	NR	rs2268796-?		3E-9	(IL18)	0.2592	[NR] unit decrease	Illumina [NR]	N
827	chr2	31786480	31786481	rs191031841	29066090	Allen RJ	2017-10-20	Lancet Respir Med	Genetic variants associated with susceptibility to idiopathic pulmonary fibrosis in people of European ancestry: a genome-wide association study.	Idiopathic pulmonary fibrosis	602 European ancestry cases, 3,366 European ancestry controls	2,158 cases, 5,195 controls	2p23.1	SRD5A2	rs191031841-T	0.041	6E-6		1.73	[1.36-2.18]	Affymetrix [NR] (imputed)	N
827	chr2	31805825	31805826	rs9282858	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2p23.1		rs9282858-T	0.03	9E-18		0.51	[0.39-0.63] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
827	chr2	31805825	31805826	rs9282858	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	NR	rs9282858-T	NR	2E-23		0.16	NR unit decrease	NR [NR] (imputed)	N
827	chr2	31805825	31805826	rs9282858	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2p23.1	SRD5A2	rs9282858-?	NR	2E-15		1.6638935	[1.47-1.89]	Illumina [13436641] (imputed)	N
827	chr2	31810973	31810974	rs559555	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	2p23.1	NR	rs559555-T	0.439501	6E-11		0.0055837	[0.0039-0.0073] unit increase	Affymetrix [16582268] (imputed)	N
827	chr2	31810973	31810974	rs559555	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	2p23.1	SRD5A2	rs559555-A	0.56	1E-44	(X-11444/X-12844)	0.036	[0.03-0.042] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
827	chr2	31810973	31810974	rs559555	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p23.1	SRD5A2	rs559555-A	0.56	7E-19	(X-11470)	0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
827	chr2	31810973	31810974	rs559555	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p23.1	SRD5A2	rs559555-A	0.56	4E-22	(X-11444)	0.033	[0.027-0.039] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
828	chr2	31853353	31853354	rs191212334	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p23.1	NR	rs191212334-G	NR	6E-11		0.344417	NR unit decrease	NR [NR] (imputed)	N
828	chr2	31854453	31854454	rs518600	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p23.1	NR	rs518600-C		3E-15		0.1887	[0.14-0.24] SD units decrease	NR [10700000] (imputed)	N
828	chr2	31868876	31868877	rs693918	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2p23.1	intergenic	rs693918-G	0.55	8E-22		0.19	unit increase	Illumina [5270624] (imputed)	N
828	chr2	31873475	31873476	rs553464	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p23.1	NR	rs553464-?		8E-8	(IL18)	0.2375	[NR] unit decrease	Illumina [NR]	N
828	chr2	31891570	31891571	rs13027103	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.1	NR	rs13027103-A	0.0941774	2E-21		0.0497363	[0.039-0.06] unit decrease	NR [19129689] (imputed)	N
828	chr2	31914920	31914921	rs76712439	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p23.1	NR	rs76712439-T	0.0382761	9E-99		0.169271	[0.15-0.19] unit decrease	NR [19129689] (imputed)	N
829	chr2	31982810	31982811	rs112881196	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	2p23.1	SRD5A2	rs112881196-G	0.039	9E-24		1.353	[1.275-1.435]	Affymetrix [7871717] (imputed)	N
829	chr2	31982810	31982811	rs112881196	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2p23.1	MEMO1	rs112881196-C	0.961212	3E-8		0.9388882	NR	Affymetrix [~ 9600000] (imputed)	N
829	chr2	31982810	31982811	rs112881196	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	2p23.1		rs112881196-G	NR	6E-18		0.0248081	[0.019-0.03] years increase	NR [7400000] (imputed)	N
829	chr2	31982810	31982811	rs112881196	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	2p23.1		rs112881196-G	NR	9E-8		0.0122263	[0.0076-0.0168] years decrease	NR [7400000] (imputed)	N
829	chr2	31982810	31982811	rs112881196	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2p23.1		rs112881196-G	NR	2E-15		0.08332483	[0.063-0.104] years increase	NR [7400000] (imputed)	N
829	chr2	31982810	31982811	rs112881196	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	2p23.1	NR	rs112881196-G	0.039212000000000025	6E-30		0.0249518	[0.021-0.029] unit increase	Affymetrix [16582268] (imputed)	N
829	chr2	31982810	31982811	rs112881196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p23.1		rs112881196-?	NR	5E-83				NR [~ 8900000] (imputed)	N
829	chr2	31989358	31989359	rs113017476	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p23.1	NR	rs113017476-A	NR	1E-37		0.0838	[0.071-0.097] unit increase	Affymetrix [9000000] (imputed)	N
829	chr2	31989358	31989359	rs113017476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p23.1	NR	rs113017476-A	0.03910800000000003	4E-47		0.048041	[0.041-0.055] unit increase	Affymetrix [16578495] (imputed)	N
829	chr2	31989358	31989359	rs113017476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p23.1	NR	rs113017476-A	0.039119000000000015	7E-134		0.190415	[0.17-0.21] unit increase	Affymetrix [16577313] (imputed)	N
829	chr2	31989358	31989359	rs113017476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2p23.1	NR	rs113017476-A	0.039246	8E-65		0.0874817	[0.077-0.098] unit increase	Affymetrix [16583148] (imputed)	N
829	chr2	31989358	31989359	rs113017476	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2p23.1	NR	rs113017476-A	0.03922999999999999	3E-122		0.182427	[0.17-0.2] unit increase	Affymetrix [16577424] (imputed)	N
829	chr2	32008085	32008086	rs188457504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p23.1		rs188457504-C	NR	6E-10		0.1296	[0.089-0.171] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
829	chr2	32008085	32008086	rs188457504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	2p23.1		rs188457504-C	0.010089	6E-10		0.129613	[0.089-0.171] unit decrease	Illumina [13474352] (imputed)	N
829	chr2	32062126	32062127	rs139454995	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	2p22.3		rs139454995-A	0.986841	3E-7		0.0595189	[0.037-0.082] unit decrease	Illumina [13900000] (imputed)	N
829	chr2	32070488	32070489	rs11904162	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p22.3	NR	rs11904162-?		8E-7	(IL18)	0.243	[NR] unit decrease	Illumina [NR]	N
830	chr2	32142519	32142520	rs11124272	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p22.3	NR	rs11124272-C		5E-16		0.2118	[0.16-0.26] SD units increase	NR [10700000] (imputed)	N
830	chr2	32181423	32181424	rs13021718	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2p22.3	SRD5A2	rs13021718-G	NR	2E-26		0.2142	[0.17-0.25] unit decrease	Affymetrix [27512692] (imputed)	N
830	chr2	32181423	32181424	rs13021718	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p22.3	BIRC6, DPY30, HP11026, MEMO1, NLRC4, SLC30A6, SPAST, SRD5A2, YIPF4	rs13021718-A	NR	7E-26		0.093299	NR unit decrease	NR [NR] (imputed)	N
830	chr2	32183610	32183611	rs7559329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs7559329-?	NR	1E-13				NR [~ 8900000] (imputed)	N
831	chr2	32246194	32246195	rs139157003	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p22.3	NR	rs139157003-?	NR	7E-8	(AA)	1.6118	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
831	chr2	32278781	32278782	rs7577696	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Interleukin-18 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	2p22.3	NR	rs7577696-A	NR	9E-7		0.034	[0.02-0.048] unit increase	Illumina [~ 9000000] (imputed)	N
831	chr2	32278781	32278782	rs7577696	31584380	Sun W	2019-10-04	Med Chem	The Assessment of Interleukin-18 on the Risk of Coronary Heart Disease.	Interleukin-18 levels	4,433 European ancestry individuals	NA	2p22.3	DPY30, SPAST	rs7577696-?	NR	3E-19		0.08	[0.06-0.1] unit increase	Illumina [up to 2543887] (imputed)	N
831	chr2	32278781	32278782	rs7577696	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p22.3	NR	rs7577696-?		1E-11	(IL18)	0.2832	[NR] unit decrease	Illumina [NR]	N
831	chr2	32278781	32278782	rs7577696	24182552	Matteini AM	2013-10-29	Cytokine	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adult individuals	NA	2p22.3	SRD5A2, DPY30, SPAST, SLC30A6, NLRC4	rs7577696-G	0.41	3E-19	(IL18)	0.08	[0.060-0.100] unit increase	Illumina [2543887] (imputed)	N
831	chr2	32311283	32311284	rs6747488	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p22.3	NR	rs6747488-C		1E-20		0.2252	[0.18-0.27] SD units increase	NR [10700000] (imputed)	N
831	chr2	32360187	32360187	rs138583704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p22.3		rs138583704-TTGTG	NR	1E-8		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
832	chr2	32379662	32379663	rs56272862	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	2p22.3	SPAST	rs56272862-G	0.045	8E-7		3.995	[2.307-6.917]	Illumina [7585874] (imputed)	N
832	chr2	32381963	32381964	rs72796869	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p22.3	SPAST	rs72796869-C	0.960924	1E-10		0.0331033	[0.023-0.043] unit decrease	Affymetrix [NR] (imputed)	N
832	chr2	32389645	32389646	rs34197800	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p22.3	NR	rs34197800-?		3E-10	(IL18)	0.2779	[NR] unit decrease	Illumina [NR]	N
832	chr2	32400679	32400684	rs144922892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p22.3		rs144922892-G	0.132728	7E-9		0.0172477	[0.011-0.023] unit increase	Illumina [13479295] (imputed)	N
832	chr2	32420232	32420233	rs183361874	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2p22.3	NR	rs183361874-?	NR	4E-6		0.558	[0.33-0.78] unit increase	Illumina [at least 560000] (imputed)	N
832	chr2	32447407	32447408	rs72796891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs72796891-G	NR	9E-30		0.0678	[0.056-0.08] unit increase	Affymetrix [9000000] (imputed)	N
832	chr2	32449871	32449875	rs376045897	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	2p22.3	NR	rs376045897-?	NR	9E-7		0.71651006	[0.63-0.82]	Affymetrix, Illumina [~ 10400000] (imputed)	N
832	chr2	32478353	32478354	rs138529890	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p22.3	NR	rs138529890-A	0.03781599999999996	1E-14		0.0241649	[0.018-0.03] unit increase	Affymetrix [16582621] (imputed)	N
832	chr2	32478353	32478354	rs138529890	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p22.3	NR	rs138529890-A	0.03781599999999996	3E-14		0.0252972	[0.019-0.032] unit increase	Affymetrix [16582614] (imputed)	N
832	chr2	32489157	32489158	rs479333	31584380	Sun W	2019-10-04	Med Chem	The Assessment of Interleukin-18 on the Risk of Coronary Heart Disease.	Interleukin-18 levels	4,433 European ancestry individuals	NA	2p22.3	NLRC4, SLC30A6	rs479333-?	NR	1E-15		0.07	[0.05-0.09] unit increase	Illumina [up to 2543887] (imputed)	N
832	chr2	32489850	32489851	rs385076	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	2p22.3		rs385076-T	0.37	1E-101		0.2026	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
832	chr2	32489850	32489851	rs385076	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p22.3	NLRC4	rs385076-C		2E-22		0.2432	[0.19-0.29] SD units increase	NR [10700000] (imputed)	N
832	chr2	32494189	32494190	rs374743	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Interleukin-18 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	2p22.3	NR	rs374743-T	NR	9E-7		0.0353	[0.021-0.049] unit increase	Illumina [~ 9000000] (imputed)	N
832	chr2	32495826	32495827	rs72798713	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs72798713-C	NR	4E-16		0.038	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
833	chr2	32515336	32515337	rs72798731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p22.3	NR	rs72798731-T	0.03444400000000003	7E-9		0.0144295	[0.0098-0.019] unit increase	Affymetrix [16582909] (imputed)	N
833	chr2	32515336	32515337	rs72798731	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p22.3	NR	rs72798731-T	0.03444400000000003	1E-9		0.0164423	[0.011-0.022] unit increase	Affymetrix [16582965] (imputed)	N
833	chr2	32528233	32528234	rs455737	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p22.3		rs455737-A	0.31	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
833	chr2	32528609	32528610	rs72798738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p22.3		rs72798738-?	NR	7E-18				NR [~ 8900000] (imputed)	N
833	chr2	32529415	32529416	rs12470495	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2p22.3		rs12470495-A	0.28	3E-10		0.09	unit increase	Illumina [2093892] (imputed)	N
833	chr2	32529415	32529416	rs12470495	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2p22.3		rs12470495-A	0.28	6E-10		0.09	unit increase	Illumina [2398641] (imputed)	N
833	chr2	32545451	32545452	rs145992881	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.3	NR	rs145992881-?	NR	6E-6		4.514	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
833	chr2	32557874	32557875	rs6710522	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	2p22.3	NR	rs6710522-G	NR	5E-7		0.7502	NR	Illumina [at least 560000] (imputed)	N
833	chr2	32563425	32563426	rs11678584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p22.3	NR	rs11678584-T	0.138852	3E-18		0.028287191	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr2	32563425	32563426	rs11678584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p22.3	NR	rs11678584-T	0.138862	2E-18		0.028419817	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr2	32563425	32563426	rs11678584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p22.3		rs11678584-T	0.138917	3E-15		0.025458034	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr2	32563425	32563426	rs11678584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p22.3		rs11678584-T	0.138929	1E-15		0.02573072	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
833	chr2	32563425	32563426	rs11678584	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p22.3	YIPF4, BIRC6	rs11678584-T	0.1401	4E-9		1.02819		Affymetrix [11880941] (imputed)	N
833	chr2	32563425	32563426	rs11678584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p22.3	intergenic	rs11678584-T	0.1359	2E-11		0.03585364	[0.025-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr2	32563425	32563426	rs11678584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p22.3	intergenic	rs11678584-T	0.1359	1E-10		0.03437443	[0.024-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
833	chr2	32579998	32579999	rs58387006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2p22.3		rs58387006-?	NR	7E-8				NR [~ 8900000] (imputed)	N
833	chr2	32611511	32611512	rs4952211	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	2p22.3	NR	rs4952211-T	0.4386	7E-9		5.787	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
833	chr2	32611511	32611512	rs4952211	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	2p22.3	NR	rs4952211-T	0.4372	1E-7		5.335	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
833	chr2	32616878	32616879	rs3769600	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p22.3	NR	rs3769600-A	0.4316	2E-6		0.0086	[0.0051-0.0121] unit increase	NR [~ 27400000] (imputed)	N
834	chr2	32643527	32643528	rs176411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p22.3		rs176411-?	NR	3E-8				NR [~ 8900000] (imputed)	N
834	chr2	32646846	32646847	rs176413	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p22.3		rs176413-G	0.445	4E-18		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
834	chr2	32646846	32646847	rs176413	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p22.3	BIRC6	rs176413-A	0.55	2E-9		0.015470056	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
834	chr2	32661542	32661543	rs12992095	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2p22.3	NR	rs12992095-A	0.23	2E-6		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
834	chr2	32666136	32666137	rs13409142	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p22.3	YIPF4, BIRC6	rs13409142-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
834	chr2	32679731	32679732	rs3769598	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p22.3	NR	rs3769598-A	0.86	4E-12		0.0181	[0.013-0.023] unit increase	NR [NR]	N
834	chr2	32726312	32726313	rs17011982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p22.3		rs17011982-C	NR	3E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
834	chr2	32736042	32736043	rs17428810	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p22.3	NR	rs17428810-T	0.293241	1E-8		0.03951933	[0.026-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
834	chr2	32736042	32736043	rs17428810	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2p22.3		rs17428810-?	NR	2E-8				NR [7857346] (imputed)	N
834	chr2	32736042	32736043	rs17428810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p22.3	Intergenic	rs17428810-T	0.6951	8E-10	(MTAG)	0.0153	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
834	chr2	32736042	32736043	rs17428810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p22.3	Intergenic	rs17428810-T	0.6951	8E-9		0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
834	chr2	32743083	32743084	rs2069213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs2069213-?	NR	6E-10				NR [~ 8900000] (imputed)	N
834	chr2	32754985	32754986	rs6724235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p22.3		rs6724235-A	0.791665	2E-8		0.0272106	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
834	chr2	32759867	32759868	rs4435504	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	2p22.3	NR	rs4435504-T	NR	5E-7		1.3285	NR	Illumina [at least 560000] (imputed)	N
834	chr2	32762480	32762481	rs111994577	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p22.3	BIRC6	rs111994577-G	0.0733	9E-7		0.014	[0.0085-0.0195] unit increase	Affymetrix [~ 7740000] (imputed)	N
835	chr2	32770156	32770157	rs2754511	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p22.3	NR	rs2754511-T	0.33	2E-8		0.00925063	[0.006-0.0125] unit decrease	NR [9732723] (imputed)	N
835	chr2	32770156	32770157	rs2754511	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p22.3	NR	rs2754511-T	0.328	6E-8		0.00773373	[0.0049-0.0105] unit decrease	NR [~ 9732723] (imputed)	N
835	chr2	32800421	32800422	rs35286811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p22.3	BIRC6	rs35286811-G	0.126287	5E-19		0.029699957	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
835	chr2	32800421	32800422	rs35286811	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.3	NR	rs35286811-C	0.874344	3E-24				Affymetrix, Illumina [22063850] (imputed)	N
835	chr2	32800421	32800422	rs35286811	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p22.3	NR	rs35286811-C	0.873168	4E-26		0.029868	[0.024-0.035] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
835	chr2	32808670	32808671	rs72787505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs72787505-G	NR	9E-14		0.032	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
835	chr2	32808803	32808804	rs2710634	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p22.3	NR	rs2710634-C	0.521	5E-19		0.00966946	[0.0075-0.0118] unit decrease	NR [9732723] (imputed)	N
835	chr2	32808803	32808804	rs2710634	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p22.3	NR	rs2710634-C	0.521	3E-12		0.017761428	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
835	chr2	32808803	32808804	rs2710634	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p22.3	NR	rs2710634-C	0.527	1E-11		0.00992778	[0.0071-0.0128] unit increase	NR [9732723] (imputed)	N
835	chr2	32808803	32808804	rs2710634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p22.3	Intergenic	rs2710634-T	0.4855	2E-10	(MTAG)	0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
835	chr2	32808803	32808804	rs2710634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p22.3	Intergenic	rs2710634-T	0.4801	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
835	chr2	32811908	32811909	rs2710606	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p22.3	BIRC6	rs2710606-A	0.336	4E-8		0.0069	[0.0044-0.0094] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
835	chr2	32816088	32816089	rs72787511	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	2p22.3		rs72787511-C	NR	1E-13		0.0217955	[0.016-0.028] years increase	NR [7400000] (imputed)	N
835	chr2	32816088	32816089	rs72787511	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	2p22.3		rs72787511-C	NR	7E-8		0.0125533	[0.0079-0.0172] years decrease	NR [7400000] (imputed)	N
835	chr2	32826001	32826002	rs2599510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p22.3	Intergenic	rs2599510-A	0.4998	5E-9	(MTAG)	0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
835	chr2	32826001	32826002	rs2599510	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2p22.3	NR	rs2599510-G		8E-11		0.1516	[0.11-0.2] SD units increase	NR [10700000] (imputed)	N
835	chr2	32833432	32833433	rs12473941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p22.3		rs12473941-A	NR	6E-9		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
835	chr2	32845992	32845993	rs113600170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p22.3		rs113600170-G	NR	1E-8		0.0188	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
835	chr2	32848657	32848658	rs2568464	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p22.3	TTC27	rs2568464-T	0.5731	1E-8		0.013693864	[0.009-0.0184] unit increase	Affymetrix [11515109] (imputed)	N
835	chr2	32849206	32849207	rs6723226	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p22.3	TTC27	rs6723226-?	0.35129999999999995	2E-8		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
835	chr2	32849206	32849207	rs6723226	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	2p22.3	NR	rs6723226-A	0.651475	7E-9		0.995	[0.993, 0.996]	Affymetrix [39302896] (imputed)	N
835	chr2	32849206	32849207	rs6723226	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p22.3	TTC27	rs6723226-A	NR	4E-8		0.017145976	[0.011-0.023] unit increase	Affymetrix [NR]	N
835	chr2	32849224	32849224	rs35634599	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p22.3	TTC27	rs35634599-CT	0.3314	2E-15		0.0158	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
835	chr2	32851487	32851488	rs72787518	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2p22.3		rs72787518-T	0.860908	4E-8		0.0290371	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
835	chr2	32851487	32851488	rs72787518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p22.3		rs72787518-G	NR	1E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
835	chr2	32851881	32851882	rs72787520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs72787520-G	NR	2E-26		0.0708	[0.058-0.084] unit increase	Affymetrix [9000000] (imputed)	N
835	chr2	32851881	32851882	rs72787520	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p22.3	BIRC6, NLRC4, SLC30A6, SPAST, YIPF4	rs72787520-G	NR	4E-20		0.145234	NR unit decrease	NR [NR] (imputed)	N
835	chr2	32858636	32858637	rs4952343	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p22.3	TTC27	rs4952343-A	0.552803	2E-9		0.0126436	[0.0085-0.0168] unit decrease	NR [16516521] (imputed)	N
835	chr2	32861554	32861555	rs7599125	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2p22.3	NLRC4	rs7599125-G	0.44	9E-10		0.23	unit decrease	Illumina [5270624] (imputed)	N
835	chr2	32865520	32865521	rs1031261	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2p22.3	TTC27	rs1031261-C	0.11	2E-6	(White matter hyperintensities)			Illumina [2131250] (imputed)	N
835	chr2	32869842	32869843	rs2710619	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs2710619-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
835	chr2	32873773	32873774	rs72787535	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p22.3	TTC27	rs72787535-T	NR	2E-19		0.144612	NR unit decrease	NR [NR] (imputed)	N
835	chr2	32879792	32879793	rs183477728	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2p22.3		rs183477728-T	NR	6E-13		0.764	[0.56-0.97] unit decrease	Affymetrix [509886] (imputed)	N
835	chr2	32883196	32883197	rs2053799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p22.3	NR	rs2053799-G	NR	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
836	chr2	32922316	32922317	rs72787555	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p22.3	BIRC6, LTBP1, TTC27, YIPF4	rs72787555-G	NR	2E-20		0.145315	NR unit decrease	NR [NR] (imputed)	N
836	chr2	32926442	32926443	rs139994715	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2p22.3		rs139994715-T	NR	6E-12		0.769	[0.55-0.99] unit decrease	Affymetrix [509886] (imputed)	N
836	chr2	32991297	32991298	rs12616557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs12616557-C	NR	1E-13		0.035	[0.026-0.044] unit increase	Affymetrix [9000000] (imputed)	N
836	chr2	33027185	33027185	rs11406621	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2p22.3		rs11406621-?	NR	6E-6		0.7638391	[0.44-1.09] unit increase	Illumina [9875426] (imputed)	N
837	chr2	33038262	33038268	rs150489034	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p22.3	TTC27	rs150489034-T	NR	5E-18		0.14408	NR unit decrease	NR [NR] (imputed)	N
837	chr2	33043856	33043857	rs3769560	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	2p22.3	TTC27	rs3769560-G	0.39	2E-6	(recessive)	0.14	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
837	chr2	33059095	33059096	rs11680788	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	2p22.3	LINC00486	rs11680788-?	NR	8E-7		1.72	[1.39-2.13]	Affymetrix, Illumina [NR] (imputed)	N
837	chr2	33059095	33059096	rs11680788	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	2p22.3	LINC00486	rs11680788-?	NR	4E-8	(Latino)	2.13	[1.35-5.26]	Affymetrix, Illumina [NR] (imputed)	N
837	chr2	33062280	33062281	rs6543678	34648798	Seo JY	2021-10-11	J Invest Dermatol	Genome-wide association study identifies multiple genetic loci for skin color in Korean women.	Facial skin colour (CIELAB index b* value)	11,079 Korean ancestry individuals	5,940 Korean ancestry individuals	2p22.3	LINC00486	rs6543678-T	0.367	6E-9		0.17	unit increase	Illumina [5032876] (imputed)	N
837	chr2	33108010	33108011	rs4952314	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p22.3		rs4952314-A	0.41	2E-16		8.22	z score increase	Affymetrix [9061022] (imputed)	N
837	chr2	33108010	33108011	rs4952314	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p22.3	NR	rs4952314-A	0.3855	4E-10				NR [9056863] (imputed)	N
837	chr2	33113369	33113370	rs62133955	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p22.3	NR	rs62133955-C	0.305487	4E-8		0.0183636	[0.012-0.025] unit increase	NR [19129689] (imputed)	N
837	chr2	33114452	33114453	rs58048037	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	2p22.3	TTC27, LTBP1	rs58048037-T	NR	4E-7		0.129791	[0.08-0.18] unit increase	Illumina [at least 950000] (imputed)	N
837	chr2	33121503	33121504	rs6728021	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	2p22.3	LTBP1	rs6728021-G		4E-8	(AA)			Illumina [NR]	N
837	chr2	33124555	33124556	rs6543682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p22.3		rs6543682-?	NR	2E-11				NR [~ 8900000] (imputed)	N
837	chr2	33135116	33135117	rs72866208	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2p22.3		rs72866208-G	NR	6E-6		1.08394		Affymetrix, Illumina [62056310] (imputed)	N
837	chr2	33150468	33150469	rs72789844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p22.3	NR	rs72789844-T	NR	6E-14		0.0532	[0.039-0.067] unit increase	Affymetrix [9000000] (imputed)	N
838	chr2	33205805	33205806	rs114587946	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ERP44	5,355 Icelandic ancestry individuals	NA	2p22.3		rs114587946-A	0.03165	1E-15		0.416367	[0.31-0.52] unit increase	Illumina [7506463] (imputed)	N
838	chr2	33206948	33206949	rs219140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.3		rs219140-?	NR	1E-13				NR [~ 8900000] (imputed)	N
838	chr2	33218036	33218037	rs219158	34101054	Nikopensius T	2021-06-08	Clin Rheumatol	Association analysis of juvenile idiopathic arthritis genetic susceptibility factors in Estonian patients.	Arthritis (juvenile idiopathic)	263 Estonian ancestry cases, 6,956 Estonian ancestry controls	NA	2p22.3	LTBP1	rs219158-?	NR	9E-6		1.498	[1.258-1.783] unit increase	Illumina [16583468] (imputed)	N
838	chr2	33219146	33219147	rs13417287	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p22.3	LTBP1	rs13417287-T	0.77	6E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
838	chr2	33250570	33250571	rs4952336	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.3	TTC27	rs4952336-?	NR	7E-6	(TAG 58:8)	0.18712974	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
838	chr2	33253310	33253311	rs4449182	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.3	TTC27	rs4449182-?	NR	5E-6	(PC 38:6)	0.19419779	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
838	chr2	33263906	33263907	rs2008845	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p22.3	LTBP1	rs2008845-G	NR	2E-8		0.0186732	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
838	chr2	33263906	33263907	rs2008845	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs2008845-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
838	chr2	33285583	33285584	rs7605669	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	2p22.3	NR	rs7605669-G	0.831855	9E-6		1.126126	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
839	chr2	33301946	33301947	rs542631	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2p22.3	LTBP1	rs542631-A		1E-7	(EA)			Illumina [NR]	N
839	chr2	33315229	33315230	rs12712337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p22.3	NR	rs12712337-C	0.765968	2E-11		0.015184	[0.011-0.02] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
839	chr2	33338109	33338110	rs11124308	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs11124308-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
839	chr2	33346386	33346387	rs78879228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.3	LTBP1	rs78879228-G	NR	3E-10		0.0343256	[0.024-0.045] unit decrease	Affymetrix [323123] (imputed)	N
839	chr2	33346797	33346798	rs743236	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.3	LTBP1	rs743236-T	NR	4E-8		0.0171071	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
839	chr2	33348493	33348494	rs115781177	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	2p22.3	LTBP1	rs115781177-A	0.93	2E-8		5.04	[3.3-6.78] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
839	chr2	33348678	33348679	rs115179432	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.3	LTBP1	rs115179432-G	NR	4E-11		0.0392429	[0.028-0.051] unit decrease	Affymetrix [323123] (imputed)	N
839	chr2	33348678	33348679	rs115179432	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p22.3	NR	rs115179432-?	NR	8E-10		0.26195	[0.18-0.35] unit decrease	Affymetrix [7794483] (imputed)	N
839	chr2	33348678	33348679	rs115179432	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p22.3	NR	rs115179432-?	NR	2E-7	(male)	0.3522	[0.22-0.48] unit decrease	Affymetrix [7794483] (imputed)	N
839	chr2	33348678	33348679	rs115179432	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2p22.3	LTBP1	rs115179432-?	NR	1E-10		0.17	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
839	chr2	33350585	33350586	rs75550549	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs75550549-A	0.92774	2E-12		0.123834	[0.089-0.158] decrease	Affymetrix [11014269] (imputed)	N
839	chr2	33357095	33357096	rs116072427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p22.3		rs116072427-C	NR	4E-13		0.0292	[0.021-0.037] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
839	chr2	33357095	33357096	rs116072427	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p22.3	LTBP1	rs116072427-C	0.07	5E-11		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
839	chr2	33358682	33358683	rs72793778	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.3	LTBP1	rs72793778-C	0.7714	1E-6		0.0375	[0.022-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
839	chr2	33359564	33359565	rs116713089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.3	LTBP1	rs116713089-A	NR	2E-10		0.0345083	[0.024-0.045] unit decrease	Affymetrix [321016] (imputed)	N
839	chr2	33359564	33359565	rs116713089	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p22.3	LTBP1	rs116713089-G	0.9298	8E-18		0.24	[0.19-0.29] unit decrease	Affymetrix [~ 11900000] (imputed)	N
839	chr2	33360125	33360126	rs1545550	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p22.3	LTBP1	rs1545550-G	0.122106872172761	2E-6		0.0039389	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
839	chr2	33360337	33360338	rs1545552	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.3	LTBP1	rs1545552-A	NR	5E-14		0.0233301	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
839	chr2	33360337	33360338	rs1545552	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.3	LTBP1	rs1545552-A	NR	1E-11		0.022891	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
839	chr2	33360337	33360338	rs1545552	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.3	LTBP1	rs1545552-A	0.2879	1E-8		0.04	[0.026-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
839	chr2	33360337	33360338	rs1545552	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p22.3	LTBP1	rs1545552-A	0.2778	8E-9	(EA, women)	0.0298	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr2	33360337	33360338	rs1545552	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p22.3	LTBP1	rs1545552-A	0.2778	6E-13	(EA)	0.0291	[0.021-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr2	33360337	33360338	rs1545552	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p22.3	LTBP1	rs1545552-A	0.2778	3E-7	(EA,men)	0.0296	[0.018-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr2	33360337	33360338	rs1545552	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p22.3	LTBP1	rs1545552-G	0.72	2E-10		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
839	chr2	33360555	33360556	rs4670256	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.3	LTBP1	rs4670256-?	NR	2E-23		0.028468013	[0.023-0.034] unit increase	Illumina [27896057] (imputed)	N
839	chr2	33360847	33360848	rs4670893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p22.3	LTBP1	rs4670893-G	NR	2E-10		0.0198946	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
839	chr2	33360847	33360848	rs4670893	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs4670893-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
839	chr2	33360847	33360848	rs4670893	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs4670893-?	NR	5E-71				NR [~ 8900000] (imputed)	N
839	chr2	33361424	33361425	rs6714546	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p22.3		rs6714546-A	0.2849	1E-8		0.0952454	[0.061-0.129] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
839	chr2	33361424	33361425	rs6714546	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p22.3	LTBP1	rs6714546-A	0.279	2E-18		0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
839	chr2	33361424	33361425	rs6714546	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p22.3	LTBP1	rs6714546-A	0.28	2E-9		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
839	chr2	33372504	33372505	rs62133340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p22.3		rs62133340-?	NR	5E-11				NR [~ 8900000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.5104	5E-8	(EA)	0.0209	[0.013-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.5104	4E-6	(EA, men)	0.0264	[0.015-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.4932	8E-8		0.0193	[0.012-0.026] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.4932	5E-6	(men)	0.0247	[0.014-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.5104	2E-7	(EA)	0.023	[0.014-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p22.3	LTBP1	rs6715793-T	0.4932	1E-6		0.0205	[0.012-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-?	0.5104	2E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-?	0.5104	1E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-?	0.4932	3E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p22.3	LTBP1	rs6715793-?	0.4932	2E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p22.3	LTBP1	rs6715793-T	0.4858	1E-6		0.019	[0.011-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p22.3	LTBP1	rs6715793-T	0.4858	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p22.3	LTBP1	rs6715793-T	0.4858	2E-7		0.0185	[0.011-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
839	chr2	33379262	33379263	rs6715793	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p22.3	LTBP1	rs6715793-T	0.5131	7E-7	(EA, men)	0.0236	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr2	33379262	33379263	rs6715793	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p22.3	LTBP1	rs6715793-T	0.5131	1E-8	(EA)	0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr2	33389594	33389595	rs6743685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs6743685-?	NR	1E-35				NR [~ 8900000] (imputed)	N
839	chr2	33397557	33397558	rs4637087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs4637087-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
839	chr2	33413302	33413303	rs12104955	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	2p22.3	LTBP1	rs12104955-C	0.499	4E-8		1.07	[1.05-1.10]	Affymetrix [84000000] (imputed)	N
840	chr2	33423800	33423801	rs7581446	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee	88,842 European ancestry cases, 397,208 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	2p22.3		rs7581446-T	0.483	5E-11		0.95265734	[0.938939968-0.966575113]	Affymetrix, Illumina [NR] (imputed)	N
840	chr2	33430602	33430603	rs17567417	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	2p22.3	NR	rs17567417-G	0.53	2E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
840	chr2	33430602	33430603	rs17567417	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.3	LTBP1	rs17567417-C	0.4719	4E-7		0.0323	[0.02-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
840	chr2	33434335	33434336	rs2061027	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	2p22.3	NR	rs2061027-A	0.51	3E-13		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
840	chr2	33435348	33435349	rs2061026	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	2p22.3	LTBP1	rs2061026-A	NR	1E-11		1.06	[1.05-1.09]	Affymetrix, Illumina [11554240] (imputed)	N
840	chr2	33453027	33453028	rs11693247	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs11693247-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
840	chr2	33461374	33461375	rs4630744	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	2p22.3	NR	rs4630744-A	0.51	2E-12		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
840	chr2	33467054	33467055	rs11692723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p22.3	LTBP1	rs11692723-C	NR	1E-8		0.0182758	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
840	chr2	33467054	33467055	rs11692723	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs11692723-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
840	chr2	33471191	33471192	rs3769528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p22.3		rs3769528-G	0.154345	2E-37		0.0361539	[0.031-0.042] unit decrease	Illumina [13479295] (imputed)	N
840	chr2	33471191	33471192	rs3769528	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.3	LTBP1	rs3769528-?	NR	5E-38		0.051678337	[0.044-0.06] unit decrease	Illumina [27896057] (imputed)	N
840	chr2	33471191	33471192	rs3769528	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p22.3	LTBP1	rs3769528-A	0.82	7E-22		0.059	[0.043-0.075] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
840	chr2	33471191	33471192	rs3769528	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2p22.3	LTBP1	rs3769528-G	0.15	8E-8		0.08	[0.05-0.11] cm decrease	Illumina [420885]	N
840	chr2	33487250	33487251	rs11678716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.3	LTBP1	rs11678716-C	NR	2E-8		0.0310542	[0.02-0.042] unit decrease	Affymetrix [321016] (imputed)	N
840	chr2	33487250	33487251	rs11678716	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p22.3	LTBP1	rs11678716-C	0.0681	4E-24		0.0377	[0.03-0.045] unit decrease	Affymetrix [18391927] (imputed)	N
840	chr2	33487648	33487649	rs59246149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p22.3		rs59246149-G	0.177276	4E-9		0.020838	[0.014-0.028] unit decrease	Illumina [13479924] (imputed)	N
840	chr2	33499106	33499107	rs3754829	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs3754829-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
840	chr2	33506356	33506357	rs6739725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs6739725-?	NR	1E-25				NR [~ 8900000] (imputed)	N
840	chr2	33514752	33514753	rs11685108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p22.3		rs11685108-G	NR	2E-50		0.0302	[0.026-0.034] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
840	chr2	33520714	33520715	rs3820911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.3	LTBP1	rs3820911-T	NR	4E-8		0.0168876	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
840	chr2	33523942	33523943	rs78692521	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LTBP1	rs78692521-?	NR	5E-7	(male)	0.610737	[NR] unit decrease	Affymetrix [NR] (imputed)	N
840	chr2	33527298	33527299	rs41464348	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	2p22.3	LTBP1	rs41464348-T	0.35	7E-6		0.37	[NR] cm decrease	Affymetrix [334546]	N
840	chr2	33527570	33527571	rs7575377	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	2p22.3		rs7575377-T	0.2763	6E-6		1.244		NR [11110260] (imputed)	N
840	chr2	33550768	33550769	rs11903480	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2p22.3		rs11903480-A	0.755477	5E-10		0.0659864	[0.045-0.087] increase	Affymetrix [11014269] (imputed)	N
840	chr2	33550768	33550769	rs11903480	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	2p22.3	LTBP1	rs11903480-?	NA	7E-9		1.6	[1.05-2.15] unit increase	Affymetrix [5541230] (imputed)	N
841	chr2	33568352	33568353	rs13430745	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p22.3	LTBP1	rs13430745-T	NR	9E-9		0.023401	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
841	chr2	33568352	33568353	rs13430745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.3	NR	rs13430745-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
841	chr2	33569111	33569112	rs77019336	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.3	LTBP1	rs77019336-C	NR	5E-9		0.0394893	[0.026-0.053] unit decrease	Affymetrix [321016] (imputed)	N
841	chr2	33588868	33588869	rs34447926	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p22.3	LTBP1	rs34447926-A	0.734	3E-8		0.081	[0.052-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
841	chr2	33683792	33683793	rs6728868	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	2p22.3		rs6728868-C	NR	8E-6		1.17	[1.09-1.25]	Illumina [7105229] (imputed)	N
842	chr2	33700937	33700938	rs4077711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.3		rs4077711-?	NR	2E-8				NR [~ 8900000] (imputed)	N
842	chr2	33701889	33701890	rs13385731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p22.3		rs13385731-C	NR	2E-20		0.0334	[0.026-0.04] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
842	chr2	33701889	33701890	rs13385731	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	2p22.3	NR	rs13385731-G	NR	4E-6				Illumina [NR] (imputed)	N
842	chr2	33701889	33701890	rs13385731	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2p22.3	RASGRP3	rs13385731-T	0.86	1E-33		1.287	[1.25-1.33]	Illumina [11270530] (imputed)	N
842	chr2	33701889	33701890	rs13385731	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2p22.3	RASGRP3	rs13385731-?	NR	1E-6		1.2048193	[1.11-1.3]	Illumina [at least 5000000] (imputed)	N
842	chr2	33701889	33701890	rs13385731	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p22.3	RASGRP3	rs13385731-?	0.16	4E-6	(Chinese)	1.35	[NR]	NR [6344733] (imputed)	N
842	chr2	33701889	33701890	rs13385731	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	2p22.3	RASGRP3	rs13385731-?	NR	1E-6		1.4492754	[1.25-1.69]	Illumina [NR]	N
842	chr2	33701889	33701890	rs13385731	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p22.3	RASGRP3	rs13385731-A	0.83	4E-6		1.3889		Illumina [2100739] (imputed)	N
842	chr2	33701889	33701890	rs13385731	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	2p22.3	RASGRP3	rs13385731-A	0.85	1E-15		1.43	[1.32-1.56]	Illumina [493955]	N
842	chr2	33702202	33702203	rs13425999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	2p22.3		rs13425999-T	0.133451	2E-9		0.0332741	[0.022-0.044] unit decrease	Illumina [13477433] (imputed)	N
842	chr2	33702202	33702203	rs13425999	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	2p22.3	RASGRP3	rs13425999-?	NR	8E-15		0.05226	[0.039-0.065] unit decrease novel	Illumina [6108953] (imputed)	N
842	chr2	33702202	33702203	rs13425999	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2p22.3	RASGRP3	rs13425999-?	NR	6E-12		0.04626	[0.033-0.059] unit increase novel	Illumina [6108953] (imputed)	N
842	chr2	33702202	33702203	rs13425999	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	1,541 European ancestry cases, 2,634 European ancestry controls	NA	2p22.3	RASGRP3	rs13425999-C	0.92	3E-6		1.5625	[1.3-1.89]	Illumina [102585]	N
842	chr2	33702901	33702902	rs897504	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy (pathologically confirmed)	295 European ancestry cases, 3,864 European ancestry controls	NA	2p22.3	RASGRP3	rs897504-?	NR	7E-6		1.5625	NR	Illumina [4903804] (imputed)	N
842	chr2	33724928	33724929	rs12468338	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.3	FAM98A	rs12468338-?	NR	5E-6	(xanthosine)	0.29692447	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
842	chr2	33753078	33753079	rs1551486	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p22.3	NR	rs1551486-?		8E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
842	chr2	33764175	33764176	rs13388394	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	2p22.3	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs13388394-?		3E-8				NR [7428630] (imputed)	N
842	chr2	33764175	33764176	rs13388394	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p22.3	COL11A1	rs13388394-?		2E-9				NR [7428630] (imputed)	N
842	chr2	33764175	33764176	rs13388394	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p22.3	NR	rs13388394-?		5E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
842	chr2	33772524	33772525	rs4258776	26741287	Milet J	2016-01-07	Genes Immun	Genome-wide association study of antibody responses to Plasmodium falciparum candidate vaccine antigens.	IgG response to Plasmodium falciparum antigens (GLURP, MSP2 FC27, MSP2 3D7)	528 Sereer ancestry individuals from 130 families	NA	2p22.3	RASGRP3, FAM98A	rs4258776-?	NR	8E-6				Affymetrix [174950]	N
842	chr2	33776679	33776680	rs2367809	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2p22.3	NR	rs2367809-?		7E-7	(PCB194)	0.26	[0.16-0.36] unit increase	Illumina [8736858] (imputed)	N
842	chr2	33800898	33800899	rs13418410	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to antidepressants and depression	1,311 European ancestry non-responder cases, 192,178 European ancestry healthy controls	NA	2p22.3	RASGRP3, FAM98A	rs13418410-?		2E-6		1.212	[1.121-1.311]	Illumina [~ 12000000] (imputed)	N
842	chr2	33811935	33811936	rs3213961	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p22.3	FAM98A	rs3213961-T	0.3663	9E-7		1.49	[1.271-1.748]	Affymetrix, Illumina [14074516] (imputed)	N
843	chr2	33826876	33826877	rs1375194	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants in depression	7,795 European ancestry responder cases, 1,311 European ancestry non-responder cases	NA	2p22.3	FAM98A, MYADML	rs1375194-?		2E-7		1.2578616	[1.15-1.37]	Illumina [~ 12000000] (imputed)	N
843	chr2	33845641	33845642	rs6543726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.3		rs6543726-?	NR	4E-13				NR [~ 8900000] (imputed)	N
843	chr2	33848714	33848715	rs73928945	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.3	NR	rs73928945-T	0.0662	1E-8	(CTH)	0.3847	NR unit increase	Illumina [1671387] (imputed)	N
843	chr2	33856929	33856930	rs77739585	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of aspartame	1,757 European ancestry twins	NA	2p22.3	FAM98A	rs77739585-C	0.54	4E-6		0.16	[0.082-0.238] unit increase	Illumina [4381914] (imputed)	N
843	chr2	33861823	33861824	rs116449111	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	2p22.3	FAM98A	rs116449111-C	0.979	2E-6		0.218	[0.13-0.31] unit decrease	Affymetrix [7287191] (imputed)	N
843	chr2	33935901	33935902	rs112082427	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	2p22.3	LINC01317	rs112082427-A	NR	1E-6		4.845	z score decrease	Illumina [5300000] (imputed)	N
844	chr2	33989651	33989652	rs5025564	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p22.3	Intergenic	rs5025564-G	0.5983	9E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
844	chr2	34068391	34068392	rs4670302	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	2p22.3	FAM98A	rs4670302-?	NR	5E-8		0.92	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
845	chr2	34173400	34173401	rs11677592	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2p22.3	MYADML	rs11677592-T	0.37	6E-6	(Turkish ancestry)	0.13	[0.071-0.189] unit decrease	Illumina [~ 8300000] (imputed)	N
845	chr2	34201220	34201221	rs56291704	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p22.3	LINC01317, LINC01318	rs56291704-?		3E-7	(heterogeneous)	0.165	[0.1-0.23] unit decrease	Illumina [1492601] (imputed)	N
845	chr2	34207035	34207036	rs75977254	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2p22.3	NR	rs75977254-A	NR	7E-6		4.273	[2.27-8.06]	Illumina [13976150] (imputed)	N
846	chr2	34287283	34287284	rs146300688	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p22.3	SLC25A5P2	rs146300688-C	NR	4E-6	(East Asian)	1.2468828	[1.09-1.4]	Illumina [6627481] (imputed)	N
846	chr2	34287283	34287284	rs146300688	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p22.3	intergenic	rs146300688-T	NR	8E-7	(Chinese)	1.633987	[1.44-1.83]	Affymetrix, Illumina [up to 5107227] (imputed)	N
846	chr2	34288851	34288852	rs118042571	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01320	rs118042571-?	NR	2E-8	(female)	1.46704	[NR] unit increase	Affymetrix [NR] (imputed)	N
846	chr2	34328690	34328691	rs17014720	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	2p22.3	LINC01317	rs17014720-T	NR	1E-6		2.45	NR unit increase	Illumina [up to 666531]	N
846	chr2	34332318	34332319	rs7556694	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	2p22.3	NR	rs7556694-?	NR	7E-6		0.1097	[0.062-0.158] unit increase	Illumina [at least 560000] (imputed)	N
846	chr2	34336591	34336592	rs6757137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p22.3	Intergenic	rs6757137-T	0.3672	1E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
847	chr2	34350572	34350573	rs1477506	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	2p22.3	NR	rs1477506-G	0.6	1E-8		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
847	chr2	34380022	34380023	rs6543810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p22.3		rs6543810-T	0.3771	2E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
847	chr2	34386393	34386394	rs6717900	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p22.3	Intergenic	rs6717900-A	0.3713	2E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
847	chr2	34420701	34420702	rs7597665	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	2p22.3	AC009499.1	rs7597665-C	0.29	1E-9		0.0072303	[0.0049-0.0096] unit increase	NR [16367095] (imputed)	N
847	chr2	34445496	34445497	rs116420771	33407712	Liang X	2021-01-06	Mol Brain	Evaluating the genetic effects of sex hormone traits on the development of mental traits: a polygenic score analysis and gene-environment-wide interaction study in UK Biobank cohort.	Testosterone levels x alcohol consumption (drinks per week) interaction	388,571 British ancestry individuals	NA	2p22.3	NR	rs116420771-?	NR	6E-8				Affymetrix [NR] (imputed)	N
847	chr2	34445952	34445953	rs2193790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p22.3	NR	rs2193790-?	NR	4E-14				Affymetrix [NR]	N
847	chr2	34471380	34471381	rs7569426	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2p22.3	NR	rs7569426-A	0.5754	9E-6		0.0117	[0.0065-0.0169] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
848	chr2	34479583	34479584	rs116137931	34670813	Horimoto A	2021-10-20	J Am Soc Nephrol	Genome-Wide Admixture Mapping of Estimated Glomerular Filtration Rate and Chronic Kidney Disease Identify European and African Ancestry-of-Origin Loci in Hispanic and Latino Individuals in the United States.	Chronic kidney disease	12,601 Hispanic/Latino individuals	NA	2p22.3		rs116137931-?	NR	4E-8				Illumina [NR] (imputed)	N
848	chr2	34480074	34480075	rs6733379	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2p22.3	intergenic	rs6733379-G	0.28	4E-6				Perlegen [378332]	N
848	chr2	34575894	34575895	rs7577875	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	2p22.3		rs7577875-?	NR	7E-7		0.06766578	[0.041-0.094] unit increase	Illumina [9939936] (imputed)	N
849	chr2	34631031	34631032	rs6543833	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	2p22.3	MYADML	rs6543833-?		8E-8	(FSH levels - AA)			Affymetrix [677261]	N
849	chr2	34672920	34672921	rs10495822	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2p22.3	LOC100288911	rs10495822-?		8E-6				Illumina [859311]	N
849	chr2	34678734	34678735	rs62166368	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		LINC01317	rs62166368-G	0.07	5E-6				Illumina [1679420] (imputed)	N
849	chr2	34679625	34679626	rs1607644	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p22.3	AC073218.1	rs1607644-A	0.3639	3E-11		0.1035	[0.073-0.134] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
849	chr2	34687909	34687910	rs2887973	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	2p22.3	LINC01318, LINC01317, LINC01320	rs2887973-?	NR	7E-7	(African)	0.3856	[0.24-0.53] unit increase	Affymetrix, Illumina [NR] (imputed)	N
850	chr2	34832136	34832137	rs746680092	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p22.3	AC073218.1	rs746680092-A	0.9985	5E-6		1.5615	[0.89-2.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
850	chr2	34846166	34846167	rs139280007	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01320	rs139280007-?	NR	2E-9		2.65895	[NR] unit decrease	Affymetrix [NR] (imputed)	N
852	chr2	35009753	35009754	rs116617395	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.3	NR	rs116617395-C	0.0122	1E-9	(HIST1H1C)	0.03246	NR unit increase	Illumina [1671387] (imputed)	N
852	chr2	35013850	35013851	rs17015647	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.3	RASGRP3	rs17015647-?	NR	2E-6	(isocitrate)	0.19974619	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
852	chr2	35063983	35063984	rs77993098	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (visuospatial skill) (slope of z-scores)	1,145 European ancestry individuals	NA	2p22.3	MYADML, LOC100288911	rs77993098-T	0.2	4E-6		0.24	unit decrease	Illumina [5600000] (imputed)	N
852	chr2	35093292	35093293	rs7600259	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2p22.3	intergenic	rs7600259-?	NR	1E-6	(SF9)			Affymetrix [5476100] (imputed)	N
854	chr2	35336563	35336564	rs192481803	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	2p22.3	Intergenic	rs192481803-T	0.007	2E-7		0.65	[0.41-0.89] unit increase	NR [13607369] (imputed)	N
854	chr2	35336563	35336564	rs192481803	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	2p22.3	NR	rs192481803-T	0.01	5E-8		1.9		Affymetrix, Illumina [at least 560000] (imputed)	N
854	chr2	35337269	35337270	rs6718351	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	Fibrosis improvement in nonalcoholic steatohepatitis	38 European ancestry cases, 103 European ancestry controls	NA	2p22.3	AC012593.1	rs6718351-?	NR	5E-6				Illumina [5417859] (imputed)	N
855	chr2	35404010	35404011	rs968059	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p22.3	LOC100288911	rs968059-C	0.387	4E-6	(EA)	0.015	[0.0084-0.0206] kg/m2 increase	Affymetrix, Illumina [2550021]	N
855	chr2	35404010	35404011	rs968059	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p22.3	LOC100288911	rs968059-C	0.381	9E-7		0.015	[0.009-0.0208] kg/m2 increase	Affymetrix, Illumina [2550021]	N
855	chr2	35409696	35409697	rs1561554	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p22.3	NA	rs1561554-C	0.6089	5E-11		0.0115	[0.0082-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
855	chr2	35437985	35437986	rs6543913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p22.3		rs6543913-G	NR	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
855	chr2	35437985	35437986	rs6543913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p22.3		rs6543913-G	NR	6E-10		0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
855	chr2	35437985	35437986	rs6543913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.3		rs6543913-?	NR	1E-9				NR [~ 8900000] (imputed)	N
855	chr2	35441438	35441439	rs10198124	29030599	Joshi PK	2017-10-13	Nat Commun	Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity.	Parental lifespan	up to 586,626 European ancestry individuals, up to 19,433 African ancestry individuals	NA	2p22.3	intergenic	rs10198124-G	0.39	2E-8	(African)	1.22	[1.15-1.29]	Affymetrix, Illumina [at least 13643373] (imputed)	N
855	chr2	35443725	35443726	rs10204994	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p22.3	CRIM1	rs10204994-G	0.77093	5E-10		0.0101127	[0.0069-0.0133] unit increase	Affymetrix [12370749]	N
855	chr2	35447242	35447243	rs13012070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.3	NR	rs13012070-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
856	chr2	35526917	35526918	rs6750486	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2p22.3	intergenic	rs6750486-T	0.126	6E-6		0.1	[NR] unit increase	Illumina [948658]	N
856	chr2	35587481	35587482	rs35050871	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p22.3	intergenic	rs35050871-A	0.0547631788454984	6E-7	(F_Streptococcaceae_HB)	0.746786	[0.45-1.04] unit decrease	Illumina [7711310] (imputed)	N
856	chr2	35592059	35592060	rs57889320	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	2p22.3	intergenic	rs57889320-A	0.93	4E-6	(adjusted for severity)	1.4492754	[1.29-1.61]	Affymetrix, Illumina [~ 8500000] (imputed)	N
856	chr2	35638201	35638202	rs4459713	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p22.3	NR	rs4459713-?		2E-6				Illumina [4322238] (imputed)	N
857	chr2	35657890	35657891	rs4280439	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p22.3		rs4280439-C	0.395	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
857	chr2	35662796	35662797	rs13402855	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA)	up to 398 European ancestry individuals	NA	2p22.3	intergenic	rs13402855-C	NR	2E-6		0.2262	unit increase	Illumina [5767231] (imputed)	N
857	chr2	35670957	35670958	rs34935525	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p22.3	intergenic	rs34935525-T	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
857	chr2	35692234	35692235	rs116486761	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p22.3	NR	rs116486761-?	NR	2E-9				Illumina [7760689] (imputed)	N
857	chr2	35732652	35732653	rs4567910	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p22.3	Intergenic	rs4567910-A	0.5711	2E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
857	chr2	35737947	35737948	rs6543946	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.3	NR	rs6543946-?	NR	5E-7		5.029	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
858	chr2	35820685	35820686	rs13024876	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p22.3	Intergenic	rs13024876-A	0.2718	2E-8	(MTAG)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
858	chr2	35821968	35821969	rs1898931	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p22.3	Intergenic	rs1898931-A	0.4258	4E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
858	chr2	35841866	35841867	rs4398250	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.3	NR	rs4398250-?	NR	8E-7		4.941	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
858	chr2	35853529	35853530	rs116086652	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.3	NR	rs116086652-T	0.01568	1E-8	(HIBADH)	0.2576	NR unit increase	Illumina [1671387] (imputed)	N
858	chr2	35892704	35892705	rs10164796	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.3	FEZ2	rs10164796-?	NR	9E-6	(PC 34:2)	0.25426415	[0.14-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
859	chr2	36004040	36004041	rs13002275	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA		MRPL50P1, RPL21P36	rs13002275-T	0.46	8E-8		0.26	[0.16-0.36] unit increase	Illumina [8056701] (imputed)	N
860	chr2	36084227	36084228	rs72796185	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2p22.3	NR	rs72796185-T	0.7839	3E-7		0.0533	[0.033-0.074] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
860	chr2	36086522	36086523	rs12990252	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	2p22.3	MRPL50P1, RPL21P36	rs12990252-C	0.23	2E-7		0.29	[0.17-0.41] unit increase	Illumina [8066948] (imputed)	N
860	chr2	36122387	36122388	rs1524145	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	2p22.3	MRPL50P1	rs1524145-G	0.5	6E-6		17.3121	[10.07-24.55] unit decrease	Illumina [~ 6000000] (imputed)	N
860	chr2	36124315	36124316	rs2949054	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p22.3	NR	rs2949054-?		1E-6				Illumina [4322238] (imputed)	N
861	chr2	36240073	36240074	rs6543990	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p22.3	Intergenic	rs6543990-?	NR	9E-7		1.4128286	[NR]	Affymetrix [492217] (imputed)	N
862	chr2	36400730	36400731	rs78209880	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	2p22.3	Intergenic	rs78209880-A	0.942220667	6E-6		0.758957	[0.43-1.09] unit increase	Illumina [6952813] (imputed)	N
862	chr2	36432390	36432391	rs11124501	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p22.3	NR	rs11124501-A	0.751	1E-9		0.00761236	[0.0052-0.0101] unit decrease	NR [9732723] (imputed)	N
863	chr2	36466105	36466106	rs12473111	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Alistipes shahii abundance in stool	5,959 Finnish ancestry individuals	NA	2p22.3		rs12473111-A	0.0359797	4E-8		0.23729	[0.15-0.32] unit decrease	Illumina [7980478] (imputed)	N
863	chr2	36477099	36477100	rs34765784	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Residual cognitive resilience	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	2p22.3	NR	rs34765784-?	0.1143	2E-6		0.121301	[0.071-0.172] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
863	chr2	36478875	36478876	rs62132389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.3	NR	rs62132389-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
863	chr2	36526435	36526436	rs1863080	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	2p22.3	CRIM1	rs1863080-?	0.10	8E-6	(brachial circumference)	0.31	[0.17-0.45] mm increase	Illumina [316730]	N
863	chr2	36545168	36545169	rs6544006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.2		rs6544006-?	NR	1E-9				NR [~ 8900000] (imputed)	N
863	chr2	36547753	36547754	rs73922873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.2	NR	rs73922873-T	0.0122	1E-8	(IGHG2)	1.582	NR unit increase	Illumina [1671387] (imputed)	N
863	chr2	36559138	36559139	rs7569878	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	2p22.2	NR	rs7569878-T	0.017	8E-6		3.234	[1.93-5.419]	Illumina [7585599] (imputed)	N
864	chr2	36574672	36574673	rs6752813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p22.2	Intergenic	rs6752813-T	0.6822	7E-9	(MTAG)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
864	chr2	36581466	36581467	rs6708545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p22.2	Intergenic	rs6708545-A	0.6601	1E-10	(MTAG)	0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
864	chr2	36581466	36581467	rs6708545	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p22.2	Intergenic	rs6708545-A	0.6601	2E-10	(MTAG)	0.011	[0.0077-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
864	chr2	36582819	36582820	rs181698387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p22.2	Intergenic	rs181698387-T	0.3247	5E-9		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
864	chr2	36583139	36583140	rs145029810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs145029810-?	NR	9E-11				NR [~ 8900000] (imputed)	N
864	chr2	36583460	36583461	rs3821169	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	CRIM1	rs3821169-?	NR	3E-10		0.021228017	[0.015-0.028] unit increase	Illumina [27896057] (imputed)	N
864	chr2	36590009	36590010	rs6728742	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p22.2	Intergenic	rs6728742-A	0.3557	1E-8	(MTAG)	0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
864	chr2	36590009	36590010	rs6728742	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.2	NR	rs6728742-?	NR	2E-6		4.808	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
864	chr2	36592599	36592600	rs78661713	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Physical activity	39,352 European ancestry men	NA	2p22.2		rs78661713-G	0.94	5E-8		0.7	[0.45-0.95] unit decrease	Affymetrix [8918919] (imputed)	N
864	chr2	36592844	36592845	rs141708688	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.2	NR	rs141708688-G	0.0122	4E-9	(LGALS3BP)	0.02751	NR unit increase	Illumina [1671387] (imputed)	N
864	chr2	36592844	36592845	rs141708688	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.2	NR	rs141708688-G	0.0122	1E-9	(GGH)	0.08777	NR unit increase	Illumina [1671387] (imputed)	N
864	chr2	36605303	36605304	rs4670546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.2		rs4670546-?	NR	2E-10				NR [~ 8900000] (imputed)	N
864	chr2	36606101	36606102	rs2287084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p22.2		rs2287084-T	NR	6E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
864	chr2	36613368	36613369	rs17018667	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	2p22.2		rs17018667-A	NR	6E-9		0.8939	unit increase	Illumina [NR] (imputed)	N
864	chr2	36624367	36624368	rs11891181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p22.2	CRIM1	rs11891181-C	0.236054	3E-9		0.015617725	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr2	36644132	36644133	rs2216099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p22.2		rs2216099-?	NR	4E-9				NR [~ 8900000] (imputed)	N
864	chr2	36650877	36650878	rs4670556	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	2p22.2	CRIM1	rs4670556-?	NR	3E-8				Affymetrix, Illumina [22000000] (imputed)	N
864	chr2	36657991	36657992	rs3770890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.2	NR	rs3770890-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
864	chr2	36662532	36662533	rs17018786	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	CRIM1	rs17018786-?	NR	4E-19		0.03774804	[0.029-0.046] unit decrease	Illumina [27896057] (imputed)	N
864	chr2	36665051	36665052	rs56036545	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p22.2	CRIM1	rs56036545-G	0.85459	3E-11	(8 ms)	0.0529371	[0.037-0.068] unit increase	Affymetrix [10000000] (imputed)	N
864	chr2	36673554	36673555	rs7562790	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	2p22.2	CRIM1	rs7562790-G	0.40752	7E-23		0.32484	[0.26-0.39] ms increase	Illumina [162199]	N
864	chr2	36673554	36673555	rs7562790	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	2p22.2	CRIM1	rs7562790-G	0.407564669229504	2E-14		0.3512651	[0.26-0.44] ms increase	Illumina [213295]	N
864	chr2	36673554	36673555	rs7562790	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	2p22.2	NR	rs7562790-?	NR	3E-10	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
864	chr2	36673554	36673555	rs7562790	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	2p22.2	NR	rs7562790-?	NR	1E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
864	chr2	36673773	36673774	rs1523787	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	2p22.2	CRIM1	rs1523787-A	0.4	1E-8	(European)	0.39	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
864	chr2	36673773	36673774	rs1523787	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	2p22.2	CRIM1	rs1523787-A		1E-10		0.38	[0.26-0.5] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
864	chr2	36675529	36675530	rs848512	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics	877 Korean ancestry cases	NA	2p22.2	CRIM1	rs848512-?		1E-6				Illumina [442089]	N
864	chr2	36683427	36683428	rs3755206	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p22.2	CRIM1	rs3755206-T	0.87	1E-12		0.048	[0.03-0.066] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
864	chr2	36683707	36683708	rs1017154	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p22.2	NR	rs1017154-A	0.3684	3E-8				NR [9056863] (imputed)	N
864	chr2	36686672	36686673	rs756203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.2	CRIM1	rs756203-G	NR	2E-8		0.0191243	[0.012-0.026] unit decrease	Affymetrix [321016] (imputed)	N
864	chr2	36690241	36690242	rs848534	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p22.2		rs848534-T	0.2673	4E-11		0.11843028	[0.084-0.153] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
865	chr2	36700579	36700580	rs848552	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p22.2		rs848552-C	0.4724	1E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
865	chr2	36700579	36700580	rs848552	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p22.2	CRIM1	rs848552-G	0.5245	5E-14		1.0277493		Affymetrix [11880941] (imputed)	N
865	chr2	36700579	36700580	rs848552	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p22.2	CRIM1	rs848552-G	0.5245	5E-14		1.0286014		Affymetrix [11880941] (imputed)	N
865	chr2	36700579	36700580	rs848552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p22.2		rs848552-?	NR	4E-8				NR [~ 8900000] (imputed)	N
865	chr2	36704766	36704767	rs848546	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	2p22.2	CRIM1	rs848546-?	NA	5E-10		1.55	[1.06-2.04] unit decrease	Affymetrix [5541230] (imputed)	N
865	chr2	36710778	36710779	rs11692416	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	2p22.2	CRIM1	rs11692416-T	0.37	8E-6		0.146	[0.081-0.211] unit increase	Illumina [6379332] (imputed)	N
865	chr2	36726920	36726921	rs7571231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.2	CRIM1	rs7571231-G	NR	1E-10		0.0220752	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
865	chr2	36726920	36726921	rs7571231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.2		rs7571231-?	NR	1E-29				NR [~ 8900000] (imputed)	N
865	chr2	36742954	36742955	rs884215	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.2	CRIM1	rs884215-G	NR	5E-10		0.0194873	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
865	chr2	36763619	36763620	rs3770820	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2p22.2	CRIM1	rs3770820-T	0.23	4E-8	(AA)	0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
865	chr2	36763619	36763620	rs3770820	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2p22.2	CRIM1	rs3770820-T		1E-10				Affymetrix, Illumina [17972582] (imputed)	N
865	chr2	36763619	36763620	rs3770820	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	2p22.2	CRIM1	rs3770820-T	0.231	6E-7	(AA)	0.049	[0.029-0.069] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
865	chr2	36768874	36768875	rs711245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p22.2	CRIM1, AC007401.2	rs711245-A	NR	2E-8		0.0166864	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
865	chr2	36768874	36768875	rs711245	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p22.2	CRIM1	rs711245-A	0.332	4E-14		0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
865	chr2	36770735	36770736	rs848606	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.2	NR	rs848606-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
865	chr2	36771700	36771701	rs2276671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p22.2	CRIM1, AC007401.2	rs2276671-A	NR	7E-10		0.0211661	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
865	chr2	36776270	36776271	rs1045543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p22.2		rs1045543-G	NR	7E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
865	chr2	36777824	36777825	rs9295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p22.2		rs9295-A	NR	1E-20		0.0185	[0.015-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
865	chr2	36778371	36778372	rs848602	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	CRIM1	rs848602-?	NR	2E-14		0.025726378	[0.019-0.032] unit decrease	Illumina [27896057] (imputed)	N
865	chr2	36778371	36778372	rs848602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs848602-?	NR	5E-42				NR [~ 8900000] (imputed)	N
865	chr2	36780548	36780549	rs10172196	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p22.2	FEZ2	rs10172196-G	0.6942	3E-9		0.089	[0.059-0.119] unit increase	Affymetrix [~ 11900000] (imputed)	N
865	chr2	36788615	36788616	rs3770799	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.2	NR	rs3770799-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
865	chr2	36788615	36788616	rs3770799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.2		rs3770799-?	NR	4E-9				NR [~ 8900000] (imputed)	N
865	chr2	36788615	36788616	rs3770799	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p22.2	NA	rs3770799-A	0.6367	1E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
865	chr2	36789165	36789166	rs13410783	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p22.2		rs13410783-G	0.37	2E-11				NR [NR] (imputed)	N
865	chr2	36789165	36789166	rs13410783	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2p22.2		rs13410783-G	0.37	5E-8		0.009	mmol/L decrease	NR [NR] (imputed)	N
865	chr2	36789165	36789166	rs13410783	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p22.2		rs13410783-G	0.37	8E-15		0.012	% increase	NR [NR] (imputed)	N
865	chr2	36789165	36789166	rs13410783	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p22.2	NR	rs13410783-?	NR	8E-6	(female)	0.15909	[0.089-0.229] unit increase	Affymetrix [7794483] (imputed)	N
865	chr2	36789165	36789166	rs13410783	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p22.2	NR	rs13410783-?	NR	2E-9		0.13068	[0.088-0.174] unit increase	Affymetrix [7794483] (imputed)	N
865	chr2	36792293	36792294	rs17488036	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.2	NR	rs17488036-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
865	chr2	36793081	36793082	rs848608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2p22.2	NR	rs848608-G	NR	2E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
865	chr2	36795232	36795233	rs3821150	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.2	FEZ2	rs3821150-A	NR	2E-12		0.0232846	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
865	chr2	36808349	36808350	rs848638	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p22.2	FEZ2	rs848638-C	0.63997	4E-8		0.0112	[0.0072-0.0152] unit increase	Affymetrix [NR] (imputed)	N
865	chr2	36809495	36809496	rs1179494	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2p22.2	FEZ2	rs1179494-G	0.672316	9E-10		0.019819	[0.013-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
865	chr2	36817583	36817584	rs115545989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p22.2	FEZ2, AC007401.1	rs115545989-T	NR	1E-8		0.0243745	[0.016-0.033] unit decrease	Affymetrix [323123] (imputed)	N
865	chr2	36826169	36826170	rs4670149	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p22.2	FEZ2	rs4670149-?	0.30910000000000004	1E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
866	chr2	36831932	36831933	rs111693785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p22.2	FEZ2	rs111693785-G	NR	3E-8		0.0185535	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
866	chr2	36865754	36865755	rs74853015	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2p22.2	NR	rs74853015-?		3E-7	(PCB170)	1.62	[0.99-2.25] unit decrease	Illumina [8736858] (imputed)	N
866	chr2	36926348	36926349	rs17437814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs17437814-?	NR	3E-8				NR [~ 8900000] (imputed)	N
866	chr2	36932492	36932493	rs10490666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VIT	5,360 Icelandic ancestry individuals	NA	2p22.2		rs10490666-T	0.3373	5E-39		0.235528	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
866	chr2	36932492	36932493	rs10490666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VIT	5,356 Icelandic ancestry individuals	NA	2p22.2		rs10490666-T	0.3373	1E-47		0.252438	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
866	chr2	36932492	36932493	rs10490666	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p22.2	VIT	rs10490666-A	0.65828125	1E-20	(VIT, 9627_15_3)	0.22739032	[0.18-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
866	chr2	36932492	36932493	rs10490666	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p22.2	VIT	rs10490666-T	0.304	2E-39	(Vitrin, VIT.6234.74.3)	0.35	[0.29-0.41] unit increase	Affymetrix [10572788] (imputed)	N
866	chr2	36935507	36935508	rs17019537	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2p22.2	NR	rs17019537-?	NR	4E-7	(AA)	9.51	[7.96-11.06]	Illumina [905956]	N
866	chr2	36938367	36938368	rs7593468	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2p22.2	VIT	rs7593468-?		4E-6				Illumina [2668805]	N
866	chr2	36956371	36956372	rs11124535	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.2	STRN	rs11124535-?	NR	7E-6	(DAG 36:2)	0.16210362	[0.092-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
867	chr2	36983217	36983218	rs183171911	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	2p22.2	NR	rs183171911-A		8E-6		0.8475	[0.47-1.22] unit decrease	Illumina [12770451] (imputed)	N
867	chr2	36993939	36993940	rs1468810	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VIT	5,360 Icelandic ancestry individuals	NA	2p22.2		rs1468810-C	0.4029	4E-39		0.225983	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
867	chr2	36993939	36993940	rs1468810	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VIT	5,356 Icelandic ancestry individuals	NA	2p22.2		rs1468810-C	0.4029	6E-50		0.247838	[0.22-0.28] unit increase	Illumina [7506463] (imputed)	N
867	chr2	36993939	36993940	rs1468810	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p22.2	VIT	rs1468810-C	0.3909375	1E-26	(VIT, 6234_74_3)	0.24682645	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
867	chr2	36993939	36993940	rs1468810	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p22.2	NR	rs1468810-A	0.588	3E-35	(Vitrin, VIT.6234.74.3)	0.3	[0.26-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr2	37000955	37000956	rs140104536	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p22.2	NR	rs140104536-G	0.012	1E-31	(Vitrin, VIT.6234.74.3)	1.3	[1.08-1.52] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr2	37021089	37021090	rs11677279	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.2	NR	rs11677279-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
867	chr2	37021089	37021090	rs11677279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.2		rs11677279-?	NR	5E-8				NR [~ 8900000] (imputed)	N
867	chr2	37037126	37037127	rs11685689	34409643	Freitag-Wolf S	2021-08-18	J Clin Periodontol	Sex-specific genetic factors affect the risk of early-onset periodontitis in Europeans.	Early onset periodontitis x sex interaction	545 Dutch ancestry women, 351 Dutch ancestry men	NA	2p22.2		rs11685689-?	NR	7E-6				Illumina [79780573] (imputed)	N
867	chr2	37047900	37047901	rs10206462	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs10206462-?	NR	4E-8	(left parahippocampal)			NR [9227495] (imputed)	N
867	chr2	37048556	37048557	rs75236992	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2p22.2	NR	rs75236992-T	0.02	9E-6		1.32	[1.2-1.44]	Illumina [8468885] (imputed)	N
867	chr2	37050085	37050086	rs13386673	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs13386673-?	NR	2E-8	(left parahippocampal)			NR [9227495] (imputed)	N
867	chr2	37056329	37056330	rs4670629	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs4670629-?	NR	1E-8	(left parahippocampal)			NR [9227495] (imputed)	N
867	chr2	37059461	37059462	rs13021393	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p22.2		rs13021393-A	0.5	4E-86		19.67	z score increase	Affymetrix [9061022] (imputed)	N
867	chr2	37059461	37059462	rs13021393	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p22.2	NR	rs13021393-A	0.4821	1E-17				NR [9056863] (imputed)	N
867	chr2	37059556	37059557	rs13021775	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p22.2	NR	rs13021775-?	NR	3E-6		0.008115	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
867	chr2	37063240	37063240	rs35050623	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p22.2		rs35050623-?	NR	8E-44				NR [9705931] (imputed)	N
867	chr2	37068427	37068428	rs711244	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p22.2	MACF1, KIAA0754, BMP8A, PABPC4	rs711244-?		2E-8				NR [7428630] (imputed)	N
867	chr2	37068427	37068428	rs711244	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p22.2	AC007382.1	rs711244-T	0.4226	8E-22		0.03503109	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
867	chr2	37075012	37075013	rs1861435	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p22.2		rs1861435-A	0.44	5E-177		28.37	z score increase	Affymetrix [9061022] (imputed)	N
867	chr2	37075012	37075013	rs1861435	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p22.2		rs1861435-A	0.44	1E-86		19.73	z score increase	Affymetrix [9061022] (imputed)	N
867	chr2	37075012	37075013	rs1861435	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p22.2	NR	rs1861435-A	0.4255	1E-17				NR [9056863] (imputed)	N
867	chr2	37075012	37075013	rs1861435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p22.2	STRN	rs1861435-A	0.425884	2E-53		0.03485773	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr2	37075012	37075013	rs1861435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.2	NR	rs1861435-T	0.572182	5E-64				Affymetrix, Illumina [17210439] (imputed)	N
867	chr2	37075012	37075013	rs1861435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p22.2	NR	rs1861435-T	0.57362	2E-66		0.033329	[0.03-0.037] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
867	chr2	37075012	37075013	rs1861435	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p22.2	STRN	rs1861435-T	0.575265	3E-12		0.0140772	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
867	chr2	37076593	37076594	rs62132521	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs62132521-T	0.8896	4E-7	(Precuneus)	18.05896	[11.08-25.04] unit increase	Affymetrix, Illumina [NR]	N
867	chr2	37079582	37079583	rs62132522	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2p22.2		rs62132522-?	NR	5E-8				Affymetrix [NR] (imputed)	N
867	chr2	37079582	37079583	rs62132522	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs62132522-?		3E-9				NR [7428630] (imputed)	N
867	chr2	37079582	37079583	rs62132522	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	NR	rs62132522-?		2E-34				NR [7428630] (imputed)	N
867	chr2	37079582	37079583	rs62132522	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	VIT, AC007382.1, STRN, HEATR5B	rs62132522-?		6E-46				NR [7428630] (imputed)	N
867	chr2	37079582	37079583	rs62132522	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs62132522-T	0.5553	4E-8	(Precuneus)	12.284587	[7.91-16.66] unit increase	Affymetrix, Illumina [NR]	N
867	chr2	37079582	37079583	rs62132522	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2p22.2	NR	rs62132522-?		2E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
867	chr2	37083141	37083142	rs2717504	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	2p22.2	VIT, STRN	rs2717504-?		5E-6		0.005	unit increase	Illumina [13900000] (imputed)	N
867	chr2	37090232	37090233	rs2110944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p22.2		rs2110944-C	NR	5E-10		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
867	chr2	37090232	37090233	rs2110944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p22.2		rs2110944-C	NR	4E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
867	chr2	37090232	37090233	rs2110944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p22.2		rs2110944-C	NR	5E-10		0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
867	chr2	37090232	37090233	rs2110944	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2p22.2	STRN	rs2110944-C	0.53	3E-8		5.54	z-score increase	Affymetrix [4312306] (imputed)	N
867	chr2	37090232	37090233	rs2110944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p22.2	NR	rs2110944-C	NR	8E-10		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
867	chr2	37090232	37090233	rs2110944	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p22.2	NR	rs2110944-T	0.469149	2E-14		0.0154024	[0.011-0.019] unit decrease	NR [NR]	N
868	chr2	37097008	37097009	rs2110942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p22.2		rs2110942-C	NR	6E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
868	chr2	37100057	37100058	rs181604431	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STRN	rs181604431-?	NR	9E-9		4.5012	[NR] unit increase	Affymetrix [NR] (imputed)	N
868	chr2	37100057	37100058	rs181604431	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		STRN	rs181604431-?	NR	5E-8	(male)	4.00823	[NR] unit increase	Affymetrix [NR] (imputed)	N
868	chr2	37102248	37102249	rs17496249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p22.2		rs17496249-G	NR	2E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
868	chr2	37102248	37102249	rs17496249	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p22.2	STRN	rs17496249-A	0.5546	7E-11		0.0123	[0.0086-0.016] unit decrease	Affymetrix [18391927] (imputed)	N
868	chr2	37102248	37102249	rs17496249	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p22.2	STRN	rs17496249-A	0.55	1E-23		0.64	[0.52-0.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
868	chr2	37102248	37102249	rs17496249	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p22.2	STRN	rs17496249-A	0.5424	6E-23		0.6563	[0.53-0.79] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
868	chr2	37102248	37102249	rs17496249	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p22.2	STRN	rs17496249-?	NR	5E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
868	chr2	37118665	37118665	rs66993681	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2p22.2	STRN	rs66993681-C	0.456	3E-8	(women)	0.04	[0.026-0.054] unit increase	Affymetrix [~ 9000000] (imputed)	N
868	chr2	37123382	37123383	rs2003585	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	2p22.2	STRN	rs2003585-T	0.493221	1E-7		0.207463	[0.13-0.28] unit increase	Affymetrix [8590397] (imputed)	N
868	chr2	37123382	37123383	rs2003585	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs2003585-?		2E-17				NR [7428630] (imputed)	N
868	chr2	37149497	37149498	rs11124554	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	2p22.2	STRN	rs11124554-?	NR	4E-8		0.02216	[0.014-0.03] unit decrease	Illumina [6108953] (imputed)	N
868	chr2	37150792	37150793	rs3770776	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs3770776-A	0.5686	2E-14	(Isthmus Cingulate)	5.552393	[4.13-6.98] unit decrease	Affymetrix, Illumina [NR]	N
868	chr2	37152898	37152899	rs2372785	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2p22.2	NR	rs2372785-?		3E-9	(Fornix (cres) / Stria terminalis)			NR [8955960] (imputed)	N
868	chr2	37154424	37154425	rs2110994	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p22.2	STRN	rs2110994-A	0.475937	5E-9		0.012940792	[0.0086-0.0173] unit decrease	Affymetrix [93095623] (imputed)	N
868	chr2	37154424	37154425	rs2110994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p22.2	NR	rs2110994-T	0.521931	1E-12		0.013426	[0.0097-0.0171] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
868	chr2	37154424	37154425	rs2110994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p22.2		rs2110994-?	NR	5E-10				NR [~ 8900000] (imputed)	N
868	chr2	37158383	37158384	rs11679564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p22.2	STRN	rs11679564-T	0.3483	4E-10		0.02338249	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
868	chr2	37175443	37175444	rs11695609	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs11695609-T	0.5167	1E-13	(Posterior Cingulate)	5.4288273	[3.99-6.87] unit decrease	Affymetrix, Illumina [NR]	N
868	chr2	37188139	37188140	rs7424096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p22.2	STRN	rs7424096-C	0.2577	7E-9		0.02384443	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
868	chr2	37189295	37189296	rs3845780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.2	NR	rs3845780-T	0.513462	6E-11				Affymetrix, Illumina [22063850] (imputed)	N
868	chr2	37189295	37189296	rs3845780	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p22.2	RNU6-846P	rs3845780-C	0.475365	2E-9		1.0526316	[1.03-1.06]	Affymetrix [7600000] (imputed)	N
868	chr2	37192494	37192495	rs3770774	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	2p22.2	STIL, CMPK1, FOXE3, FOXD2	rs3770774-?		1E-14				NR [7428630] (imputed)	N
868	chr2	37192494	37192495	rs3770774	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2p22.2	SSBP3	rs3770774-?		3E-14				NR [7428630] (imputed)	N
868	chr2	37192494	37192495	rs3770774	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2p22.2	STRN	rs3770774-T	0.519	8E-10		0.032	[0.022-0.042] unit decrease	Affymetrix [~ 9000000] (imputed)	N
868	chr2	37192494	37192495	rs3770774	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs3770774-?	NR	2E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
868	chr2	37192865	37192866	rs3770770	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	2p22.2	STRN	rs3770770-?	NR	5E-11	(EA)	0.49	[0.35-0.63] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
868	chr2	37203005	37203006	rs13408514	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p22.2	HEATR5B	rs13408514-C	0.6686	6E-9		0.2062	[0.14-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
868	chr2	37204167	37204168	rs77424687	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p22.2	NR	rs77424687-C	0.6959	3E-9		0.0274	[0.018-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
869	chr2	37233264	37233265	rs17038861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p22.2		rs17038861-?	NR	2E-9				NR [~ 8900000] (imputed)	N
869	chr2	37237613	37237614	rs140024986	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.2	HEATR5B	rs140024986-C	0.9951	4E-6		0.2364	[0.14-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
869	chr2	37248014	37248015	rs17020136	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	2p22.2	HEATR5B	rs17020136-C	0.188355	1E-13		0.338887	[0.25-0.43] ms increase	Illumina [162199]	N
869	chr2	37248014	37248015	rs17020136	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	2p22.2	HEATR5B	rs17020136-C	0.195027211743964	1E-8		0.392939	[0.26-0.53] ms increase	Illumina [213295]	N
869	chr2	37248014	37248015	rs17020136	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	2p22.2	NR	rs17020136-?	NR	1E-9	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
869	chr2	37248014	37248015	rs17020136	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	2p22.2	STRN	rs17020136-T	0.79	2E-9	(European)	0.51	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
869	chr2	37248014	37248015	rs17020136	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	2p22.2	STRN	rs17020136-T		2E-9		0.48	[0.32-0.64] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
869	chr2	37250890	37250891	rs10084334	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p22.2	HEATR5B	rs10084334-C	0.6165	4E-8		0.0188	[0.012-0.025] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
869	chr2	37354148	37354149	rs4233921	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p22.2	EIF2AK2	rs4233921-?		2E-6	(SI+M)	0.12	[-0.0172-0.2572] unit decrease	Illumina [693128]	N
870	chr2	37369267	37369268	rs34016701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p22.2	EIF2AK2	rs34016701-G	0.395219	3E-12		0.016232513	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr2	37376290	37376291	rs2254958	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p22.2	NR	rs2254958-?	NR	6E-17				Affymetrix [NR]	N
870	chr2	37383829	37383830	rs11904602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p22.2		rs11904602-C	NR	3E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
870	chr2	37387801	37387802	rs12475964	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2p22.2	NR	rs12475964-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
870	chr2	37399804	37399805	rs113510966	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.2	NR	rs113510966-T	0.01916	4E-9	(ALDH5A1)	0.2423	NR unit increase	Illumina [1671387] (imputed)	N
870	chr2	37399897	37399898	rs190940054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.2	NR	rs190940054-A	0.0327329	5E-11				Affymetrix, Illumina [23114412] (imputed)	N
870	chr2	37399897	37399898	rs190940054	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p22.2	NR	rs190940054-A	0.033637	3E-13		0.039053	[0.029-0.05] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
870	chr2	37422071	37422072	rs186895872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p22.2		rs186895872-T	NR	5E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
870	chr2	37467263	37467264	rs2041840	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2p22.2	PRKD3, QPCT	rs2041840-C	0.62	9E-6		1.2	[NR]	Illumina [450000] (imputed)	N
871	chr2	37498687	37498688	rs72792829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p22.2		rs72792829-?	NR	2E-17				NR [~ 8900000] (imputed)	N
871	chr2	37502333	37502334	rs35852116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p22.2		rs35852116-C	NR	2E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
871	chr2	37515957	37515958	rs876461	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	2p22.2	PRKD3, NDUFAF7	rs876461-A	0.127	1E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 14542816] (imputed)	N
871	chr2	37517565	37517566	rs13420463	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	2p22.2	PRKD3	rs13420463-A	0.77	7E-11		0.356	[0.26-0.45] unit increase	Affymetrix [~ 9800000] (imputed)	N
871	chr2	37517565	37517566	rs13420463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p22.2	PRKD3	rs13420463-A		1E-10		0.282	unit increase	Affymetrix [at least 2696785] (imputed)	N
871	chr2	37517565	37517566	rs13420463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p22.2	PRKD3	rs13420463-A		5E-8		0.159	unit increase	Affymetrix [at least 2696785] (imputed)	N
871	chr2	37517565	37517566	rs13420463	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p22.2	PRKD3	rs13420463-A		1E-6		0.131	unit increase	Affymetrix [at least 2696785] (imputed)	N
871	chr2	37519709	37519710	rs4581878	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p22.2	NR	rs4581878-C	0.24998	2E-10		0.013525	[0.0094-0.0177] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
871	chr2	37519709	37519710	rs4581878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p22.2		rs4581878-?	NR	2E-10				NR [~ 8900000] (imputed)	N
871	chr2	37525565	37525565	rs34916722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p22.2		rs34916722-AT	NR	9E-10		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
871	chr2	37528907	37528908	rs143457389	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	542 European ancestry cases, 7,146 European ancestry controls	NA	2p22.2	CAPN14	rs143457388-A	0.046	2E-6		1.91	[1.52-2.40]	Illumina [11310926] (imputed)	N
871	chr2	37528907	37528908	rs143457389	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	2p22.2	CAPN14	rs143457388-A	0.046	3E-16		1.77	[1.54-2.03]	Illumina [11310926] (imputed)	N
871	chr2	37538319	37538320	rs115859306	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p22.2	PRKD3	rs115859306-C	0.033693	2E-12		0.0430748	[0.031-0.055] unit increase	Affymetrix [93095623] (imputed)	N
871	chr2	37541510	37541511	rs79606218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p22.2	PRKD3	rs79606218-G	0.03362	4E-10		0.038230494	[0.026-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr2	37550902	37550903	rs7584565	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	2p22.2	PRKD3	rs7584565-T	NR	9E-9		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
871	chr2	37555513	37555514	rs111785286	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p22.2	PRKD3	rs111785286-A	0.95453	4E-10		0.0266917	[0.018-0.035] unit decrease	NR [13737936] (imputed)	N
871	chr2	37559354	37559355	rs6734118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p22.2		rs6734118-A	NR	3E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
871	chr2	37559354	37559355	rs6734118	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p22.2	PRKD3, QPCT	rs6734118-A	0.539	3E-12	(Japanese)	0.024	[0.018-0.03] unit increase	Illumina [6108953] (imputed)	N
871	chr2	37559354	37559355	rs6734118	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p22.2	PRKD3, QPCT	rs6734118-A	0.24	3E-9		0.017	[0.011-0.023] unit increase	Illumina [6108953] (imputed)	N
871	chr2	37559742	37559743	rs13419498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p22.2		rs13419498-A	NR	2E-9		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
871	chr2	37559742	37559743	rs13419498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p22.2		rs13419498-A	0.538721	9E-10		0.0194264	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
871	chr2	37561928	37561929	rs2372993	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p22.2	QPCT	rs2372993-C	NR	5E-7		1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
871	chr2	37561928	37561929	rs2372993	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p22.2	intergenic	rs2372993-C	NR	7E-7		1.049318	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
871	chr2	37562392	37562393	rs112711080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p22.2		rs112711080-?	NR	1E-8				NR [~ 8900000] (imputed)	N
871	chr2	37567635	37567636	rs13027919	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p22.2	QPCT	rs13027919-C	0.538125	4E-28	(QPCT, 7849_3_3)	0.270694	[0.22-0.32] unit increase	Illumina [> 1000000] (imputed)	N
871	chr2	37570676	37570677	rs74699275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p22.2		rs74699275-?	NR	2E-9				NR [~ 8900000] (imputed)	N
871	chr2	37572805	37572806	rs12467820	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QPCT	5,360 Icelandic ancestry individuals	NA	2p22.2		rs12467820-T	0.442	2E-33		0.226929	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
871	chr2	37572805	37572806	rs12467820	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p22.2	NR	rs12467820-T	0.4936	3E-9		0.001244	[0.0008-0.00169] unit increase	Affymetrix [NR] (imputed)	N
871	chr2	37576135	37576136	rs3770752	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p22.2	NR	rs3770752-A	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
871	chr2	37592627	37592628	rs2373000	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	2p22.2	C2orf56, CEBPZ, PRKD3, SULT6B1, QPCT	rs2373000-T	0.402	7E-9		1.087	[1.06-1.11]	Affymetrix, Illumina [9871789]	N
871	chr2	37596088	37596089	rs3770745	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2p22.2	QPCT	rs3770745-T	0.229	1E-7		1.22	[1.14-1.32]	Affymetrix, Illumina [~ 8500000] (imputed)	N
871	chr2	37603800	37603801	rs888096	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	2p22.2	NA	rs888096-G	0.3466	3E-6		3.016	[1.885-4.828]	Illumina [243345]	N
871	chr2	37603800	37603801	rs888096	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	2p22.2	QPCT, PRKD3	rs888096-A	NR	5E-8		1.15	[1.09-1.21]	Affymetrix, Illumina [> 10000000] (imputed)	N
872	chr2	37652212	37652213	rs76512216	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	QPCT, CDC42EP3	rs76512216-?	NR	1E-9		0.018159553	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
872	chr2	37717795	37717796	rs2373109	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high minus low frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	2p22.2	NR	rs2373109-A	0.51	3E-6	(EA)	0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [NR] (imputed)	N
872	chr2	37731664	37731665	rs960902	22569225	Krintel SB	2012-05-06	Pharmacogenet Genomics	Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNF? inhibitors in patients with rheumatoid arthritis.	Response to TNF-alpha inhibitors in rheumatoid arthritis	196 European ancestry cases	NA	2p22.2	QPCT	rs960902-?	NR	8E-6	(Relative change in DAS28)			Illumina [486450]	N
872	chr2	37748366	37748367	rs7559976	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs7559976-T	0.5408	1E-9	(Precuneus)	13.42645	[9.09-17.77] unit decrease	Affymetrix, Illumina [NR]	N
873	chr2	37750979	37750980	rs4352210	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p22.2	intergenic	rs4352210-A	0.37	2E-6		0.14	[0.08-0.20] unit decrease	Illumina [~ 318327]	N
873	chr2	37765175	37765176	rs6705305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs6705305-?	NR	3E-8				NR [~ 8900000] (imputed)	N
873	chr2	37809005	37809006	rs147257741	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p22.2	AC006369.2	rs147257741-A	0.9968	4E-6		1.2985	[0.75-1.85] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
873	chr2	37818235	37818236	rs2215605	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	2p22.2	CDC42EP3	rs2215605-?		3E-10	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
873	chr2	37849851	37849852	rs6740259	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2p22.2	CDC42EP3	rs6740259-A	0.890945	7E-16		1.0577255	NR	Affymetrix [~ 9600000] (imputed)	N
873	chr2	37867610	37867611	rs1468663	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p22.2		rs1468663-?	NR	7E-9				NR [~ 8900000] (imputed)	N
873	chr2	37869493	37869494	rs9742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p22.2		rs9742-?	NR	2E-8				NR [~ 8900000] (imputed)	N
873	chr2	37874849	37874850	rs13406302	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p22.2	NR	rs13406302-C	0.26	9E-13		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
873	chr2	37874849	37874850	rs13406302	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p22.2	NR	rs13406302-C	0.26	5E-8				Affymetrix [2446094] (imputed)	N
874	chr2	37883697	37883698	rs112837080	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.2	NR	rs112837080-?	NR	7E-6		4.504	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
874	chr2	37892117	37892118	rs7586641	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	COL11A1	rs7586641-?		8E-15				NR [7428630] (imputed)	N
874	chr2	37892117	37892118	rs7586641	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p22.2	CDC42EP3	rs7586641-?		2E-11				NR [7428630] (imputed)	N
874	chr2	37898230	37898231	rs11686168	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	2p22.2		rs11686168-?	NR	4E-8		1.35	[1.22-1.51]	Affymetrix, Illumina [29826485] (imputed)	N
874	chr2	37899309	37899310	rs9309013	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p22.2	NR	rs9309013-A	0.3395	7E-10	(Inferior Temporal)	13.212109	[9.01-17.41] unit decrease	Affymetrix, Illumina [NR]	N
874	chr2	37899714	37899715	rs4670759	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs4670759-?	NR	4E-8	(right fusiform)			NR [9227495] (imputed)	N
874	chr2	37903297	37903298	rs9973919	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p22.2		rs9973919-C	0.48	2E-34		12.22	z score increase	Affymetrix [9061022] (imputed)	N
874	chr2	37903297	37903298	rs9973919	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p22.2		rs9973919-C	0.48	6E-14		7.51	z score increase	Affymetrix [9061022] (imputed)	N
874	chr2	37903297	37903298	rs9973919	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p22.2		rs9973919-C	0.48	2E-25		10.41	z score increase	Affymetrix [9061022] (imputed)	N
874	chr2	37903297	37903298	rs9973919	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p22.2	NR	rs9973919-C	0.4593	5E-12				NR [9056863] (imputed)	N
874	chr2	37903297	37903298	rs9973919	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p22.2	NR	rs9973919-C	0.4593	1E-17				NR [9056863] (imputed)	N
874	chr2	37903297	37903298	rs9973919	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p22.2	NR	rs9973919-?	NR	3E-8	(right fusiform)			NR [9227495] (imputed)	N
874	chr2	37905657	37905658	rs116711337	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	2p22.2	NR	rs116711337-C	0.01215	4E-6		0.6365	[0.37-0.91] unit decrease	Illumina [10677593] (imputed)	N
874	chr2	37914929	37914930	rs929551	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	2p22.2	NR	rs929551-G		2E-6		0.1686	[0.1-0.238] SD units decrease	NR [10700000] (imputed)	N
874	chr2	37922818	37922819	rs4670762	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	2p22.2	NR	rs4670762-A	0.21	3E-7	(left leg)	0.32	[0.2-0.44] g increase	Illumina [> 1100000]	N
874	chr2	37940541	37940542	rs4670766	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	2p22.2	CDC42EP3	rs4670766-?	NR	2E-6		0.005	[NR] unit decrease	Illumina [478011]	N
874	chr2	37942189	37942190	rs11688681	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p22.2	CDC42EP3	rs11688681-T	NR	2E-8		0.0169067	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
874	chr2	37948569	37948570	rs12467084	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	2p22.2	CDC42EP3, FAM82A1	rs12467084-G	0.964	1E-9				NR [509413]	N
874	chr2	37954716	37954717	rs144261420	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p22.2	CDC42EP3, LINC00211, FAM82A1	rs144261420-G	NR	1E-6	(sleep latency, weekdays)	0.5179	[0.31-0.73] unit increase	Affymetrix [7141204] (imputed)	N
874	chr2	37957479	37957480	rs13012266	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p22.2	intergenic	rs13012266-C		7E-6		0.2833	unit increase	Illumina [5767231] (imputed)	N
874	chr2	37960612	37960613	rs17511102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p22.2	NR	rs17511102-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
874	chr2	37960612	37960613	rs17511102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.2	NR	rs17511102-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
874	chr2	37960612	37960613	rs17511102	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p22.2	NR	rs17511102-?	NR	4E-6		0.08001189	[0.046-0.114] unit increase	Illumina [34656550] (imputed)	N
874	chr2	37960612	37960613	rs17511102	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p22.2	intergenic	rs17511102-T	0.0855914	9E-11		0.01967	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
874	chr2	37960612	37960613	rs17511102	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p22.2	intergenic	rs17511102-T	0.0855914	4E-9	(females)	0.02835	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
874	chr2	37960612	37960613	rs17511102	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p22.2	intergenic	rs17511102-T	0.0855914	7E-6	(females)	0.02324	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
874	chr2	37960612	37960613	rs17511102	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p22.2	intergenic	rs17511102-T	0.0855914	1E-8		0.01873	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
874	chr2	37960612	37960613	rs17511102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs17511102-?	NR	3E-61				NR [~ 8900000] (imputed)	N
874	chr2	37960612	37960613	rs17511102	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.2	CDC42EP3	rs17511102-A	0.9121	2E-6		0.0568	[0.033-0.08] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
874	chr2	37960612	37960613	rs17511102	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p22.2	CDC42EP3	rs17511102-T	0.09	2E-8		1.4	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
874	chr2	37960612	37960613	rs17511102	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p22.2	CDC42EP3	rs17511102-A	0.91	2E-18		0.06	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
874	chr2	37977016	37977017	rs604381	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	2p22.2	intergenic	rs604381-A	0.32	8E-6	(maternal warmth)	1.26	[NR] unit increase	Perlegen [429901]	N
874	chr2	37980858	37980859	rs679092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p22.2		rs679092-C	NR	1E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
874	chr2	37988448	37988449	rs74184888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p22.2	AC006369.3	rs74184888-T	NR	6E-11		0.0292967	[0.021-0.038] unit increase	Affymetrix [321114] (imputed)	N
874	chr2	37990078	37990079	rs7590255	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	2p22.2	NR	rs7590255-G	0.02	4E-6		1.56		Illumina [803202]	N
874	chr2	37993303	37993304	rs7601637	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p22.2	AK057187	rs7601637-G	0.6938	6E-10		0.2175	[0.15-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
874	chr2	37995421	37995422	rs7589518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p22.2		rs7589518-T	NR	1E-57		0.0213	[0.019-0.024] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
874	chr2	37995421	37995422	rs7589518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p22.2		rs7589518-T	0.493943	3E-25		0.0213548	[0.017-0.025] unit increase	Illumina [13479295] (imputed)	N
874	chr2	37995421	37995422	rs7589518	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	CDC42EP3, LINC00211	rs7589518-?	NR	2E-28		0.0322637	[0.027-0.038] unit increase	Illumina [27896057] (imputed)	N
874	chr2	37995589	37995590	rs17038846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.2	NR	rs17038846-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
874	chr2	37995726	37995727	rs12615742	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.2	NR	rs12615742-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
874	chr2	37996366	37996367	rs13026128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p22.2		rs13026128-G	0.113409	2E-9		0.02169821	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
874	chr2	37998249	37998250	rs202150945	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p22.2	CDC42EP3, LINC00211	rs202150945-?	NR	5E-8		0.031104365	[0.02-0.042] unit decrease	Illumina [27896057] (imputed)	N
874	chr2	38006242	38006246	rs33973851	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p22.2	AC006369.3	rs33973851-A	0.4934	7E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
874	chr2	38010265	38010266	rs10165224	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (male raters)	2,062 European ancestry female individuals	213 European ancestry female individuals	2p22.2	CDC42EP3, LINC00211	rs10165224-A	0.20	2E-8		0.29	[0.19-0.39] unit decrease	Illumina [7251583] (imputed)	N
875	chr2	38044343	38044344	rs4670779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p22.2	AC010878.3	rs4670779-T	0.310956	2E-16		0.019927295	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr2	38044343	38044344	rs4670779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.2	NR	rs4670779-T	0.29217	3E-18				Affymetrix, Illumina [24588908] (imputed)	N
875	chr2	38044343	38044344	rs4670779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p22.2	NR	rs4670779-T	0.310974	4E-20		0.018235	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
875	chr2	38044343	38044344	rs4670779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p22.2	AC010878.3	rs4670779-T	0.3161	9E-10		0.02442774	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr2	38044343	38044344	rs4670779	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	2p22.2	LOC344382	rs4670779-T	0.32	4E-6		0.07	[0.04-0.10] s.d. decrease	Illumina [305051]	N
875	chr2	38047062	38047063	rs7563723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p22.2		rs7563723-C	NR	4E-18		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
875	chr2	38047062	38047063	rs7563723	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p22.2	AC010878.3	rs7563723-C	0.322569	2E-19		0.02167252	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
875	chr2	38047062	38047063	rs7563723	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.2	NR	rs7563723-T	0.674662	5E-24				Affymetrix, Illumina [17210439] (imputed)	N
875	chr2	38050231	38050232	rs4670221	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p22.2	LINC00211	rs4670221-G	0.3279	3E-10		0.02458502	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
875	chr2	38094148	38094149	rs2707238	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p22.2	LINC00211	rs2707238-C	0.2842	1E-9		0.1019	[0.069-0.135] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
875	chr2	38115193	38115194	rs6706045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs6706045-?	NR	6E-14				NR [~ 8900000] (imputed)	N
876	chr2	38149974	38149975	rs138744916	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p22.2	intergenic	rs138744916-A	0.9935	7E-6		0.256	[0.14-0.37] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
876	chr2	38172163	38172164	rs62134018	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	2p22.2		rs62134018-A	0.058934	3E-7		1.4858841	NR	Affymetrix [7846216] (imputed)	N
876	chr2	38212780	38212781	rs10193252	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.2	CYP1B1	rs10193252-?	NR	8E-6	(oxalate)	0.22757599	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
876	chr2	38216415	38216416	rs1446296	32445792	Bani-Fatemi A	2020-05-20	Neurosci Lett	Genome-wide association study of aggression and violence in schizophrenia.	Verbal aggression in schizophrenia	205 individuals	NA	2p22.2	NR	rs1446296-C	NR	3E-6		3.023	NR	Illumina [NR]	N
876	chr2	38259871	38259872	rs35270497	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p22.2		rs35270497-?	NR	5E-9		0.0156723	[0.01-0.021] unit increase	NR [6912294] (imputed)	N
876	chr2	38263807	38263808	rs336033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p22.2	NR	rs336033-G	0.613685	1E-11		0.013768	[0.0098-0.0177] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
877	chr2	38276548	38276549	rs6750047	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	2p22.2	RMDN2, CYP1B1	rs6750047-A	0.28	7E-9		1.1	[NR]	Illumina [at least 560000] (imputed)	N
877	chr2	38276548	38276549	rs6750047	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	2p22.2	CYP1B1, RMDN2	rs6750047-A	0.43	7E-9		0.092	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
877	chr2	38277831	38277832	rs6741148	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p22.2	FAM82A1	rs6741148-?	0.33	4E-6		5.2	[NR]	Affymetrix [512497]	N
877	chr2	38289161	38289162	rs13417487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p22.2	RMDN2, RMDN2-AS1	rs13417487-T	0.416352	1E-10		0.014391882	[0.01-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
877	chr2	38289161	38289162	rs13417487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p22.2		rs13417487-?	NR	4E-10				NR [~ 8900000] (imputed)	N
877	chr2	38290742	38290743	rs11674584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p22.2		rs11674584-C	NR	1E-9		0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
877	chr2	38292518	38292519	rs163085	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	2p22.2	RMDN2	rs163085-A	0.346	4E-6		0.59	[0.47-0.74]	Affymetrix, Illumina [82996] (imputed)	N
877	chr2	38298138	38298139	rs1800440	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2p22.2		rs1800440-C	NR	3E-13		0.0901	[0.066-0.114] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
877	chr2	38298138	38298139	rs1800440	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p22.2		rs1800440-?	NR	2E-11		0.908383	[0.88-0.94]	NR [685523]	N
877	chr2	38298138	38298139	rs1800440	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2p22.2	CYP1B1	rs1800440-C	0.186205	4E-12		0.09940242	[0.071-0.127] unit decrease	Affymetrix [7260263] (imputed)	N
877	chr2	38298138	38298139	rs1800440	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	2p22.2	CYP1B1	rs1800440-?	NA	1E-8		1.89	[1.24-2.54] unit decrease	Affymetrix [5541230] (imputed)	N
877	chr2	38298138	38298139	rs1800440	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	2p22.2	CYP1B1	rs1800440-T	0.82433	2E-24				Affymetrix, Illumina [NR] (imputed)	N
877	chr2	38298138	38298139	rs1800440	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	2p22.2	CYP1B1	rs1800440-T	0.8243	7E-15		1.1018	NR	Affymetrix, Illumina [NR] (imputed)	N
877	chr2	38298138	38298139	rs1800440	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p22.2	CYP1B1	rs1800440-T	0.813562	5E-12		1.08	[1.06-1.10]	Affymetrix [7600000] (imputed)	N
877	chr2	38298138	38298139	rs1800440	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p22.2	CYP1B1	rs1800440-T	0.82433	3E-13		1.08	[1.06-1.10]	Affymetrix, Illumina [up to 9061544] (imputed)	N
877	chr2	38298138	38298139	rs1800440	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		2p22.2	CYP1B1	rs1800440-T	0.81	2E-11		1.65	[1.43-1.91]	Illumina [~ 8000000] (imputed)	N
877	chr2	38298138	38298139	rs1800440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	2p22.2		rs1800440-?	NR	2E-10				NR [~ 8900000] (imputed)	N
877	chr2	38298138	38298139	rs1800440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2p22.2		rs1800440-?	NR	3E-8				NR [~ 8900000] (imputed)	N
877	chr2	38298138	38298139	rs1800440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.2		rs1800440-?	NR	3E-11				NR [~ 8900000] (imputed)	N
877	chr2	38304487	38304488	rs2855655	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	2p22.2	NR	rs2855655-T	NR	2E-8		0.049	[0.0078-0.0902] unit increase	Affymetrix [8351141] (imputed)	N
877	chr2	38308826	38308827	rs189668056	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	2p22.2		rs189668056-A	0.02031	7E-6		1.942	[1.453-2.596]	Affymetrix [7975321] (imputed)	N
877	chr2	38308826	38308827	rs189668056	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	2p22.2		rs189668056-A	0.02031	4E-8		2.027	[1.574-2.609]	Affymetrix [7975321] (imputed)	N
877	chr2	38317709	38317710	rs4670813	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	2p22.2	CYP1B1	rs4670813-?	NR	1E-10				Affymetrix, Illumina [7850345] (imputed)	N
877	chr2	38317709	38317710	rs4670813	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	2p22.2	CYP1B1	rs4670813-?	NR	6E-7	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
877	chr2	38318939	38318940	rs162329	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p22.2	NR	rs162329-T	0.483	2E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
877	chr2	38322360	38322361	rs162332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.2		rs162332-?	NR	2E-8				NR [~ 8900000] (imputed)	N
877	chr2	38328177	38328178	rs232542	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (time to childhood onset) x early life tobacco smoke interaction	3,187 European ancestry exposed individuals, 5,086 European ancestry unexposed individuals	NA	2p22.2	CYP1B1	rs232542-C	0.69	4E-6		1.33	[1.18-1.50]	Illumina [2110000] (imputed)	N
877	chr2	38377404	38377405	rs184577	23544012	Gaudet MM	2013-03-27	PLoS Genet	Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.	Breast cancer in BRCA2 mutation carriers	4,330 European ancestry affected women, 3,881 European ancestry unaffected women	NA	2p22.2	C2orf58	rs184577-G	0.75	4E-6		1.18	[1.10-1.27]	Illumina [at least 200908] (imputed)	N
878	chr2	38431609	38431610	rs7606492	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	2p22.2	NR	rs7606492-?	NR	2E-6				Illumina [NR]	N
878	chr2	38431609	38431610	rs7606492	28132517	Xie W	2017-01-28	AIDS Res Hum Retroviruses	Genome-Wide Analyses Reveal Gene Influence on HIV Disease Progression and HIV-1C Acquisition in Southern Africa.	HIV progression (CD4 and viral load)	556 Motswana ancestry cases	NA	2p22.2	NR	rs7606492-?	NR	2E-6				Illumina [NR]	N
878	chr2	38441982	38441983	rs1871163	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p22.2		rs1871163-?	NR	7E-6		0.94985	[0.93-0.97]	NR [685523]	N
878	chr2	38508249	38508250	rs147711728	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	2p22.2	NR	rs147711728-T	0.0108	6E-6		164.0	[93-234] unit increase	NR [9714326] (imputed)	N
879	chr2	38554596	38554597	rs115702801	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs115702801-G	0.0256	5E-14		0.5812	[0.43-0.73] unit increase	Illumina [18353565] (imputed)	N
879	chr2	38572040	38572041	rs76200754	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs76200754-T	0.01568	3E-12	(ACSL4)	0.117	NR unit increase	Illumina [1671387] (imputed)	N
879	chr2	38617301	38617302	rs115866573	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 5 levels	252 European ancestry individuals	NA	2p22.1		rs115866573-T	NR	7E-6		0.37033	[0.21-0.53] unit decrease	Illumina [NR] (imputed)	N
880	chr2	38715487	38715488	rs143571077	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	2p22.1	NR	rs143571077-G	NR	4E-8				Affymetrix, Illumina [NR] (imputed)	N
880	chr2	38741372	38741373	rs80305169	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	2p22.1	AC016995.3	rs80305169-T	NR	7E-6		0.02675	[0.015-0.038] unit decrease	Illumina [NR] (imputed)	N
880	chr2	38744766	38744767	rs7559097	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2p22.1		rs7559097-?	NR	6E-6	(mucinous_all)	1.61		Illumina [11595112] (imputed)	N
880	chr2	38745623	38745624	rs13423976	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	2p22.1	NR	rs13423976-?	NR	8E-7	(genus_Sporacetigenium)	0.7243046	[0.4-1.05] unit decrease	Affymetrix [210924]	N
880	chr2	38747656	38747657	rs13033060	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.1	NR	rs13033060-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
880	chr2	38750286	38750287	rs77489951	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p22.1	LOC101929596, HNRNPLL	rs77489951-T	0.064	9E-9	(Japanese)	0.044	[0.028-0.06] unit increase	Illumina [6108953] (imputed)	N
880	chr2	38755371	38755372	rs181132135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p22.1		rs181132135-T	NR	2E-8		0.0427	[0.028-0.058] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
880	chr2	38755371	38755372	rs181132135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p22.1		rs181132135-T	0.033967	2E-9		0.0540655	[0.036-0.072] unit increase	Illumina [13479178] (imputed)	N
880	chr2	38774404	38774405	rs150823894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p22.1		rs150823894-C	0.033945	2E-8		0.042104	[0.027-0.057] unit increase	Illumina [13479924] (imputed)	N
880	chr2	38774404	38774405	rs150823894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p22.1		rs150823894-C	NR	2E-9		0.0531	[0.036-0.07] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
880	chr2	38792044	38792045	rs183949931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs183949931-C	0.0269	6E-14		0.5668	[0.42-0.71] unit decrease	Illumina [18353565] (imputed)	N
880	chr2	38792044	38792045	rs183949931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on CD39+ resting CD4 regulatory T cell	2,650 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs183949931-C	0.02713	2E-8		0.4892	[0.32-0.66] unit increase	Illumina [17852597] (imputed)	N
880	chr2	38792044	38792045	rs183949931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs183949931-C	0.02642	8E-9		0.4908	[0.32-0.66] unit increase	Illumina [18335935] (imputed)	N
880	chr2	38792044	38792045	rs183949931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs183949931-C	0.0269	1E-9		0.5082	[0.34-0.67] unit increase	Illumina [18353565] (imputed)	N
880	chr2	38792044	38792045	rs183949931	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs183949931-C	0.0269	6E-11		0.5489	[0.39-0.71] unit increase	Illumina [18353565] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02678	5E-8		0.4091	[0.26-0.56] unit increase	Illumina [18335935] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02726	7E-12		0.5056	[0.36-0.65] unit increase	Illumina [18353565] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02726	1E-15		0.5604	[0.42-0.7] unit increase	Illumina [18353565] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02862	9E-33		0.942	[0.79-1.1] unit increase	Illumina [17954460] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02853	3E-13		0.6047	[0.44-0.77] unit increase	Illumina [17945511] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02853	1E-43		1.179	[1.02-1.34] unit increase	Illumina [17945511] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02861	2E-8		0.4689	[0.31-0.63] unit increase	Illumina [17954496] (imputed)	N
880	chr2	38793168	38793169	rs142500247	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs142500247-C	0.02726	1E-15		0.5644	[0.43-0.7] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38842525	38842526	rs201161030	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs201161030-C	0.05717	4E-9		0.3195	[0.21-0.43] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38871925	38871926	rs6544171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.1	NR	rs6544171-C	0.241131	9E-12				Affymetrix, Illumina [23467995] (imputed)	N
881	chr2	38871925	38871926	rs6544171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p22.1	NR	rs6544171-C	0.223461	4E-12		0.015555	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
881	chr2	38887963	38887964	rs58905133	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs58905133-G	0.35194	1E-11		0.1775	[0.13-0.23] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38892206	38892207	rs7559619	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4RA on Terminally Differentiated CD4+ T cell	2,903 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7559619-G	0.34464	1E-13		0.2144	[0.16-0.27] unit decrease	Illumina [17944758] (imputed)	N
881	chr2	38895919	38895920	rs13024840	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13024840-A	0.25763	5E-13		0.2049	[0.15-0.26] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38895919	38895920	rs13024840	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13024840-A	0.25763	5E-13		0.2065	[0.15-0.26] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38895919	38895920	rs13024840	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13024840-A	0.25848	4E-17		0.2465	[0.19-0.3] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38895919	38895920	rs13024840	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13024840-A	0.25848	4E-21		0.2764	[0.22-0.33] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38897073	38897074	rs13011383	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13011383-A	0.26393	3E-11		0.1866	[0.13-0.24] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.2967	1E-10		0.183	[0.13-0.24] unit increase	Illumina [18332267] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29759	5E-11		0.1818	[0.13-0.24] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29699	1E-8		0.1457	[0.096-0.196] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA- CD4+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29699	8E-10		0.1632	[0.11-0.22] unit decrease	Illumina [18349913] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA- CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29699	3E-13		0.1902	[0.14-0.24] unit decrease	Illumina [18349913] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.2973	4E-12		0.1912	[0.14-0.25] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD39+ resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29759	2E-13		0.201	[0.15-0.25] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.2973	2E-16		0.2347	[0.18-0.29] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38897248	38897249	rs12712610	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs12712610-G	0.29759	1E-8		0.1572	[0.1-0.21] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	4E-33		0.2879	[0.24-0.33] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4698	3E-20		0.2177	[0.17-0.26] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	5E-32		0.2762	[0.23-0.32] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	3E-38		0.2946	[0.25-0.34] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Central Memory CD4+ T cell %CD4+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.47028	2E-11		0.1726	[0.12-0.22] unit decrease	Illumina [18349913] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.47028	3E-9		0.128	[0.086-0.17] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	6E-38		0.2903	[0.25-0.33] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	5E-17		0.2086	[0.16-0.26] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38897809	38897810	rs6751481	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6751481-C	0.4708	5E-33		0.2886	[0.24-0.34] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38898230	38898230	rs11440818	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs11440818-GC	0.29924	2E-9		0.1653	[0.11-0.22] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38903818	38903819	rs13004842	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13004842-T	0.18057	3E-10		0.2254	[0.16-0.3] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38903818	38903819	rs13004842	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13004842-T	0.18078	1E-14		0.272	[0.2-0.34] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38903818	38903819	rs13004842	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13004842-T	0.18078	3E-18		0.2919	[0.23-0.36] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38903818	38903819	rs13004842	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13004842-T	0.18277	8E-40		0.4734	[0.4-0.54] unit increase	Illumina [17954460] (imputed)	N
881	chr2	38903818	38903819	rs13004842	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs13004842-T	0.18078	4E-18		0.2894	[0.22-0.35] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38904765	38904766	rs57091543	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	2p22.1	GALM	rs57091543-C	0.9511	4E-6	(AA)			Illumina [NR] (imputed)	N
881	chr2	38906498	38906499	rs1465655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs1465655-C	0.1916	6E-10	(GALM)	0.05625	NR unit increase	Illumina [1671387] (imputed)	N
881	chr2	38907333	38907334	rs397868616	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell Absolute Count	3,405 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs397868616-A	0.22273	2E-8		0.3412	[0.22-0.46] unit increase	Illumina [18335935] (imputed)	N
881	chr2	38910401	38910402	rs4670885	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs4670885-A	0.09582	3E-11	(GALM)	0.07344	NR unit increase	Illumina [1671387] (imputed)	N
881	chr2	38910594	38910595	rs1469594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs1469594-C	0.38461	4E-9		0.1745	[0.12-0.23] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38910594	38910595	rs1469594	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD45RA+ CD4 not regulatory T cell %CD4+ T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs1469594-C	0.38461	1E-11		0.2005	[0.14-0.26] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38914323	38914324	rs55992390	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs55992390-T	0.17819	9E-10		0.2238	[0.15-0.3] unit increase	Illumina [17954460] (imputed)	N
881	chr2	38916969	38916970	rs6741892	21339755	Liu X	2011-02-22	Mol Psychiatry	A non-synonymous polymorphism in galactose mutarotase (GALM) is associated with serotonin transporter binding potential in the human thalamus: results of a genome-wide association study.	5-HTT brain serotonin transporter levels	16 European, African American and Hispanic unmedicated bipolar disorder cases, 17 European, African American and Hispanic unmedicated major depressive disorder cases, 22 controls	51 European ancestry individuals	2p22.1	GALM	rs6741892-?	NR	5E-6	(thalamus)			Illumina [93247]	N
881	chr2	38918645	38918646	rs34875979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Secreting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs34875979-G	0.18484	1E-16		0.2919	[0.22-0.36] unit decrease	Illumina [18353565] (imputed)	N
881	chr2	38918645	38918646	rs34875979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Activated & resting CD4 regulatory T cell %CD4 regulatory T cell	3,437 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs34875979-G	0.18484	2E-15		0.2803	[0.21-0.35] unit increase	Illumina [18353565] (imputed)	N
881	chr2	38920620	38920621	rs6729180	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6729180-T	0.38478	8E-14		0.1948	[0.14-0.25] unit increase	Illumina [18332267] (imputed)	N
881	chr2	38920620	38920621	rs6729180	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6729180-T	0.38439	2E-14		0.202	[0.15-0.25] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38920620	38920621	rs6729180	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %CD4-CD8- T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs6729180-T	0.38439	1E-14		0.2034	[0.15-0.25] unit decrease	Illumina [18349913] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.4975	9E-28		0.2816	[0.23-0.33] unit increase	Illumina [18332267] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49752	5E-33		0.3014	[0.25-0.35] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49752	2E-46		0.352	[0.3-0.4] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %CD4-CD8- T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49752	8E-18		0.22	[0.17-0.27] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49752	2E-26		0.2378	[0.19-0.28] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on Terminally Differentiated CD8+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49631	2E-21		0.2588	[0.21-0.31] unit increase	Illumina [17945853] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.4978	8E-16		0.1794	[0.14-0.22] unit increase	Illumina [18340221] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49782	8E-17		0.1951	[0.15-0.24] unit increase	Illumina [18357815] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %CD8dim T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49782	3E-12		0.1741	[0.13-0.22] unit increase	Illumina [18357815] (imputed)	N
881	chr2	38921933	38921934	rs7583259	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs7583259-G	0.49782	4E-9		0.104	[0.07-0.138] unit increase	Illumina [18357815] (imputed)	N
881	chr2	38925154	38925155	rs11896593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs11896593-C	0.37083	2E-30		0.2549	[0.21-0.3] unit decrease	Illumina [18349913] (imputed)	N
881	chr2	38925154	38925155	rs11896593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs11896593-C	0.37108	3E-18		0.197	[0.15-0.24] unit increase	Illumina [18332267] (imputed)	N
881	chr2	38925154	38925155	rs11896593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA+ CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs11896593-C	0.37083	1E-33		0.2701	[0.23-0.31] unit increase	Illumina [18349913] (imputed)	N
881	chr2	38925154	38925155	rs11896593	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8+ T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs11896593-C	0.37069	1E-8		0.1051	[0.069-0.141] unit increase	Illumina [18340221] (imputed)	N
881	chr2	38927644	38927644	rs398080190	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs398080190-TA	0.44443	3E-12		0.1977	[0.14-0.25] unit decrease	Illumina [17945511] (imputed)	N
881	chr2	38927644	38927644	rs398080190	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs398080190-TA	0.44443	2E-25		0.2945	[0.24-0.35] unit decrease	Illumina [17945511] (imputed)	N
882	chr2	38933039	38933040	rs34558770	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45RA on naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p22.1		rs34558770-T	0.18709	6E-51		0.4963	[0.43-0.56] unit increase	Illumina [17945511] (imputed)	N
882	chr2	38936538	38936539	rs12987870	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs12987870-T	0.08014	7E-10	(GALM)	0.06891	NR unit increase	Illumina [1671387] (imputed)	N
883	chr2	39062875	39062876	rs6755221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.1		rs6755221-?	NR	1E-9				NR [~ 8900000] (imputed)	N
883	chr2	39101208	39101209	rs12479213	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	DHX57	rs12479213-A	0.281	9E-6	(Estradiol )	0.03	[NR] pg/mL increase	Illumina [899892]	N
883	chr2	39109557	39109558	rs3099950	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2p22.1	NR	rs3099950-?	NR	8E-6	(survival)			Illumina [288357]	N
883	chr2	39166172	39166173	rs114383460	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2p22.1	ARHGEF33	rs114383460-T	0.96	2E-6	(AA)			Illumina [NR] (imputed)	N
884	chr2	39216872	39216873	rs963731	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 3,111 controls	67 cases, 457 controls	2p22.1	SOS1	rs963731-?	NR	2E-7		2.41	[NR]	Illumina [533898] (imputed)	N
884	chr2	39216872	39216873	rs963731	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 1,986 controls	NA	2p22.1	SOS1	rs963731-?	NR	3E-6		2.42	[1.65-3.53]	Illumina [533898] (imputed)	N
884	chr2	39229169	39229170	rs77881303	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	2p22.1	NR	rs77881303-?	NR	5E-6		0.2288	[0.13-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
884	chr2	39229542	39229543	rs190191534	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p22.1	SOS1	rs190191534-C	NR	4E-6		0.6151583	[0.3-0.93] unit decrease	Illumina [> 6200000] (imputed)	N
884	chr2	39241106	39241107	rs56219475	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	2p22.1		rs56219475-?	NR	8E-10		0.0608621	[0.041-0.081] unit decrease	NR [9800000] (imputed)	N
884	chr2	39241106	39241107	rs56219475	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	2p22.1		rs56219475-?	NR	7E-16		0.0791619	[0.06-0.099] unit increase	NR [9800000] (imputed)	N
884	chr2	39241106	39241107	rs56219475	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	2p22.1		rs56219475-?	NR	7E-10		0.0630512	[0.042-0.084] unit decrease	NR [9800000] (imputed)	N
884	chr2	39241106	39241107	rs56219475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p22.1	NR	rs56219475-A	0.009214999999999973	1E-9		0.026316	[0.017-0.035] unit increase	Affymetrix [16582909] (imputed)	N
884	chr2	39241106	39241107	rs56219475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p22.1	NR	rs56219475-A	0.009214999999999973	3E-6		0.022655	[0.013-0.033] unit increase	Affymetrix [16582965] (imputed)	N
885	chr2	39411283	39411284	rs77820925	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	2p22.1	NR	rs77820925-?	NR	8E-6		0.2019	[0.12-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
886	chr2	39485722	39485723	rs370055571	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral density	1,030 Hispanic or Latin American children	NA	2p22.1	MAP4K3	rs370055571-A	0.01	5E-6	(total body)	1.19	[0.68-1.7] g/cm2 decrease	Illumina [> 1100000]	N
886	chr2	39488831	39488832	rs10865148	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p22.1		rs10865148-?	NR	3E-9				NR [~ 8900000] (imputed)	N
886	chr2	39499613	39499614	rs17023530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2p22.1		rs17023530-A	NR	5E-12		0.0339	[0.024-0.044] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
886	chr2	39512436	39512437	rs12151392	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p22.1		rs12151392-C	NR	4E-12		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
887	chr2	39601263	39601264	rs10193807	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p22.1	NR	rs10193807-C	0.8402	6E-9		0.001816	[0.0012-0.0024] unit increase	Affymetrix [NR] (imputed)	N
888	chr2	39743875	39743876	rs734663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p22.1	AC007246.3	rs734663-C	0.505569	3E-10		0.013892335	[0.0096-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
888	chr2	39743875	39743876	rs734663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p22.1	AC007246.3	rs734663-C	0.505568	2E-10		0.014014105	[0.0097-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
888	chr2	39743875	39743876	rs734663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.1	NR	rs734663-C	0.410942	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
888	chr2	39746542	39746543	rs72803112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p22.1	NR	rs72803112-T	0.479077	2E-14		0.014067	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
888	chr2	39749578	39749579	rs72803115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.1	NR	rs72803115-G	0.41346	3E-13				Affymetrix, Illumina [24558453] (imputed)	N
888	chr2	39749578	39749579	rs72803115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p22.1		rs72803115-?	NR	6E-8				NR [~ 8900000] (imputed)	N
888	chr2	39751574	39751575	rs56337010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p22.1	NR	rs56337010-C	0.503743	1E-13		0.013597	[0.01-0.017] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
888	chr2	39752948	39752949	rs10191970	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p22.1	NR	rs10191970-G	0.639951	2E-10				Affymetrix, Illumina [24332387] (imputed)	N
888	chr2	39752948	39752949	rs10191970	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p22.1	NR	rs10191970-G	0.562529	6E-11		0.012186	[0.0085-0.0158] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
888	chr2	39843196	39843197	rs7587205	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	2p22.1	AC007246.3	rs7587205-T	NR	4E-6	(AA)			Affymetrix [~ 2300000] (imputed)	N
889	chr2	39900012	39900013	rs17535450	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p22.1	THUMPD2	rs17535450-?	NR	1E-6	(PC 34:2)	0.5148951	[0.31-0.72] unit decrease	Affymetrix [at least 2500000] (imputed)	N
889	chr2	39939535	39939536	rs17024218	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	LOC728730, TMEM178	rs17024218-G	0.014	2E-6	(Total T3 )	0.03	[NR] ng/dL increase	Illumina [899892]	N
889	chr2	39947720	39947721	rs2716734	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p22.1	TMEM178	rs2716734-?	0.14	2E-6		5.97	[NR]	Affymetrix [512497]	N
889	chr2	39953888	39953889	rs2716728	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs2716728-G	0.01394	3E-8	(PON1)	0.1262	NR unit increase	Illumina [1671387] (imputed)	N
889	chr2	39959059	39959060	rs2540226	18957941	Terracciano A	2008-11-24	Mol Psychiatry	Genome-wide association scan for five major dimensions of personality.	Personality dimensions	3,972 Sardinian individuals	3,903 individuals	2p22.1	THUMPD2	rs2540226-T	0.53	3E-6	(agreeableness)	0.13	[NR] s.d. increase	Affymetrix [362129]	N
890	chr2	39992056	39992057	rs78448670	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs78448670-T	0.02265	1E-9	(IGHM)	0.1961	NR unit increase	Illumina [1671387] (imputed)	N
890	chr2	40010523	40010523	rs557998486	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Age-related macular degeneration	3,685 European ancestry cases, 52,952 European ancestry controls	NA	2p22.1		rs557998486-TG	0.0093992	3E-8		100.0		Affymetrix [11380139] (imputed)	N
890	chr2	40036966	40036967	rs10176968	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	2p22.1	SLC8A1-AS1	rs10176968-A	0.39	3E-6		1.4	[1.22-1.61]	Affymetrix, Illumina [up to 7729175] (imputed)	N
890	chr2	40048030	40048031	rs79031264	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	2p22.1	NR	rs79031264-?	NR	3E-6		0.1837	[0.11-0.26] unit increase	Illumina [at least 560000] (imputed)	N
890	chr2	40066621	40066622	rs13011737	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	2p22.1	intergenic	rs13011737-A	NR	1E-6		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
890	chr2	40099310	40099311	rs17480505	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2p22.1		rs17480505-?	NR	4E-6		1.72	[1.36-2.17]	Illumina [6778521] (imputed)	N
890	chr2	40099310	40099311	rs17480505	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2p22.1	THUMPD2, SLC8A1	rs17480505-?	NR	3E-6		1.82		Illumina [6778521] (imputed)	N
890	chr2	40107809	40107810	rs62137214	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	2p22.1	SLC8A1-AS1	rs62137214-G	0.612	2E-6	(Slope index)	0.1381	[0.081-0.195] unit increase	Affymetrix [8042262] (imputed)	N
891	chr2	40115695	40115696	rs6721181	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	2p22.1	intergenic	rs6721181-?	NR	6E-7				Affymetrix [786195]	N
891	chr2	40120844	40120845	rs140537231	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2p22.1	NR	rs140537231-?	NR	3E-6		4.1209	[1.29-6.96] unit decrease	Illumina [at least 560000] (imputed)	N
891	chr2	40163949	40163951	rs138449918	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	2p22.1	SLC8A1-AS1	rs138449918-?	NR	1E-7	(African)			Illumina [4404269] (imputed)	N
891	chr2	40179204	40179205	rs6544273	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	2p22.1	SLC8A1-AS1	rs6544273-C	0.651	8E-7	(Slope index)	0.1443	[0.087-0.201] unit decrease	Affymetrix [8042262] (imputed)	N
891	chr2	40181516	40181517	rs75847378	24770881	Nelson PT	2014-04-27	Acta Neuropathol	ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.	Alzheimer's disease	1443 cases and 99 controls	NA	2p22.1	SLC8A1-AS1	rs75847378-?	NR	7E-7				NR [4913579] (imputed)	N
892	chr2	40282201	40282202	rs10185199	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p22.1	SLC8A1	rs10185199-G	0.71933	2E-10		0.00999545	[0.0069-0.0131] unit increase	Affymetrix [12370749]	N
892	chr2	40282201	40282202	rs10185199	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.1	NR	rs10185199-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
892	chr2	40282201	40282202	rs10185199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.1		rs10185199-?	NR	3E-12				NR [~ 8900000] (imputed)	N
892	chr2	40284929	40284930	rs985060	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p22.1	NA	rs985060-A	0.2721	9E-10		0.0117	[0.008-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
892	chr2	40288586	40288587	rs759362	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p22.1		rs759362-T	0.476	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
892	chr2	40291939	40291940	rs6713781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p22.1		rs6713781-C	NR	1E-8		0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
892	chr2	40292671	40292672	rs13403962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p22.1		rs13403962-T	NR	3E-12		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
892	chr2	40303791	40303792	rs56062640	33040646	Aherrahrou R	2020-10-12	Circ Res	Genetic Regulation of Atherosclerosis-Relevant Phenotypes in Human Vascular Smooth Muscle Cells.	Aortic vascular smooth muscle cell calcification in response to osteogenic stimuli	69 European ancestry individuals, 64 Hispanic/Latin American individuals, 12 African ancestry individuals, 6 East Asian ancestry individuals	NA	2p22.1	SLC8A1-AS1	rs56062640-?	NR	5E-8		0.53	[0.35-0.71] unit decrease	Illumina [6315002] (imputed)	N
892	chr2	40335895	40335896	rs13413035	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SLC8A1-AS1	rs13413035-?	NR	3E-6		1.01	[NR] unit increase	Affymetrix [NR] (imputed)	N
892	chr2	40343462	40343463	rs60563966	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p22.1	SLC8A1-AS1, SLC8A1	rs60563966-G	NR	1E-8		0.0183798	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
892	chr2	40353276	40353277	rs6544311	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	2p22.1	SLC8A1	rs6544311-A	0.376	2E-10		0.65	[0.45-0.85] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
892	chr2	40354476	40354477	rs2373794	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	2p22.1	SLC8A1	rs2373794-?		5E-6	(EA)	0.177	[0.1-0.25] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
892	chr2	40354687	40354688	rs2110927	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	2p22.1	SLC8A1	rs2110927-C	0.269	8E-9		0.1422	[0.094-0.19] kg increase	Affymetrix [at least 17000000] (imputed)	N
893	chr2	40378343	40378344	rs409620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p22.1	NR	rs409620-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
893	chr2	40381920	40381921	rs4952499	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p22.1	SLC8A1	rs4952499-T	0.7403	3E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
893	chr2	40382711	40382712	rs374153	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2p22.1	NR	rs374153-C	NR	9E-9		0.99	unit increase	Affymetrix [14661600] (imputed)	N
893	chr2	40396077	40396078	rs404005	22628157	Levine AJ	2012-05-24	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.	HIV-associated dementia	1,287 European ancestry HIV-infected male individuals	NA	2p22.1	SLC8A1	rs404005-T	NR	3E-7	(SPEED)			Illumina [~ 2500000] (imputed)	N
893	chr2	40419505	40419506	rs5830612	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p22.1	SLC8A1	rs5830612-T	0.8749	4E-11		0.0188	[0.013-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
893	chr2	40421989	40421990	rs1641457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p22.1		rs1641457-?	NR	1E-8				NR [~ 8900000] (imputed)	N
893	chr2	40434539	40434540	rs6736607	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	2p22.1	NR	rs6736607-?	NR	6E-6	(EA)			Illumina [1735619]	N
893	chr2	40484944	40484945	rs3749056	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p22.1	NR	rs3749056-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
893	chr2	40494865	40494866	rs6759076	26422391	Yellin JL	2015-09-28	J Pediatr Orthop	Candidate Loci are Revealed by an Initial Genome-wide Association Study of Juvenile Osteochondritis Dissecans.	Juvenile osteochondritis dissecans	209 European ancestry cases, 1,855 European ancestry controls	NA	2p22.1	NR	rs6759076-?		6E-6		1.6798253	[NR]	Illumina [NR]	N
894	chr2	40507186	40507187	rs148836335	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs148836335-C	0.01045	1E-13	(MPO)	0.221	NR unit increase	Illumina [1671387] (imputed)	N
894	chr2	40525931	40525932	rs2192768	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p22.1	SLC8A1	rs2192768-C	0.4407	3E-11		0.2313	[0.16-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
894	chr2	40534702	40534703	rs77371030	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	2p22.1		rs77371030-A	0.85	9E-7		0.07	[0.05-0.09] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
894	chr2	40547423	40547424	rs2287051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p22.1		rs2287051-?	NR	2E-9				NR [~ 8900000] (imputed)	N
894	chr2	40567742	40567743	rs4952611	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p22.1	SLC8A1	rs4952611-T	0.58	4E-8		0.157	[0.098-0.216] unit decrease	Affymetrix [~ 9800000] (imputed)	N
894	chr2	40576094	40576095	rs141418970	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	2p22.1	SLC8A1	rs141418970-T	0.0102	5E-7		0.1593	NR unit increase	NR [NR] (imputed)	N
894	chr2	40578558	40578559	rs17025867	23563609	Wheeler E	2013-04-07	Nat Genet	Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.	Obesity (early onset extreme)	1,509 European ancestry cases, 5,380 European ancestry controls	971 European ancestry cases, 1,990 European ancestry controls	2p22.1	SLC8A1	rs17025867-A	0.02	2E-7		1.81	[1.45-2.27]	Affymetrix [~ 2000000] (imputed)	N
894	chr2	40583755	40583755	rs35434132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p22.1		rs35434132-GA	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
894	chr2	40584729	40584730	rs6544325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p22.1		rs6544325-?	NR	3E-12				NR [~ 8900000] (imputed)	N
894	chr2	40586021	40586022	rs1558655	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p22.1	SLC8A1	rs1558655-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
894	chr2	40600195	40600195	rs11385043	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p22.1	NR	rs11385043-TCCC	NR	4E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
894	chr2	40627872	40627873	rs62149404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p22.1		rs62149404-?	NR	7E-37				NR [~ 8900000] (imputed)	N
894	chr2	40630677	40630678	rs10490046	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	2p22.1	NR	rs10490046-?	0.745164781808852	4E-7		0.062446315	[0.038-0.086] SD units increase	Illumina [11603265] (imputed)	N
894	chr2	40630677	40630678	rs10490046	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p22.1	SLC8A1	rs10490046-A	0.782601	1E-20		0.0221091	[0.017-0.027] unit increase	NR [13737936] (imputed)	N
894	chr2	40630677	40630678	rs10490046	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p22.1		rs10490046-?	NR	2E-35		0.0305675	[0.026-0.035] unit increase	Affymetrix [20259828] (imputed)	N
894	chr2	40630677	40630678	rs10490046	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p22.1	SLC8A1	rs10490046-A	0.7657	1E-8	(European)	0.0423	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
894	chr2	40630677	40630678	rs10490046	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p22.1	SLC8A1	rs10490046-A	0.7609	1E-10		0.0429	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
894	chr2	40630677	40630678	rs10490046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p22.1	SLC8A1	rs10490046-A	0.782761	9E-8	(men)	0.0319611	[0.02-0.044] unit increase	NR [17166351] (imputed)	N
894	chr2	40630677	40630678	rs10490046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p22.1	SLC8A1	rs10490046-A	0.781663	3E-17		0.0327319	[0.025-0.041] unit increase	NR [17166351] (imputed)	N
894	chr2	40630677	40630678	rs10490046	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p22.1	SLC8A1	rs10490046-A	0.780705	3E-10	(women)	0.034098	[0.023-0.045] unit increase	NR [17166351] (imputed)	N
894	chr2	40631354	40631355	rs10490045	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	2p22.1	SLC8A1	rs10490045-T	0.7739	2E-14		0.0275	[0.02-0.035] unit decrease	NR [13977204] (imputed)	N
895	chr2	40659272	40659273	rs6719806	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p22.1	SLC8A1	rs6719806-C	0.598535	9E-11		0.0128688	[0.009-0.0168] unit increase	NR [13737936] (imputed)	N
895	chr2	40659564	40659565	rs4557030	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p22.1		rs4557030-?	NR	9E-18		0.0208735	[0.016-0.026] unit increase	Affymetrix [20259828] (imputed)	N
895	chr2	40659664	40659665	rs190197089	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2p22.1	SLC8A1	rs190197089-T	0.015	2E-9	(sCD14)	700.006	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
895	chr2	40662545	40662546	rs4629203	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p22.1	SLC8A1	rs4629203-G	0.429	3E-6	(Free T3 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
895	chr2	40680148	40680149	rs2301343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p22.1		rs2301343-G	NR	3E-16		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
895	chr2	40680148	40680149	rs2301343	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p22.1	SLC8A1	rs2301343-T	0.7621	9E-15		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
895	chr2	40680148	40680149	rs2301343	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p22.1	SLC8A1	rs2301343-T	0.7443	2E-12		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
895	chr2	40680148	40680149	rs2301343	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p22.1		rs2301343-?	NR	4E-8				NR [~ 8900000] (imputed)	N
895	chr2	40686587	40686588	rs78124249	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs78124249-T	0.01916	2E-8	(MCCC2)	0.1063	NR unit increase	Illumina [1671387] (imputed)	N
895	chr2	40698810	40698811	rs11688289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p22.1	SLC8A1	rs11688289-C	0.189024	9E-12		0.019214278	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
895	chr2	40698810	40698811	rs11688289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p22.1	SLC8A1	rs11688289-C	0.189019	7E-12		0.019328136	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr2	40713164	40713165	rs35732522	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p22.1	SLC8A1	rs35732522-A	0.661	8E-9		0.326	[0.21-0.44] unit decrease	Affymetrix [NR] (imputed)	N
895	chr2	40713164	40713165	rs35732522	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p22.1	SLC8A1	rs35732522-A	0.662	8E-8		0.0017	[0.0011-0.0023] unit decrease	Affymetrix [NR] (imputed)	N
895	chr2	40743182	40743183	rs17026114	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	2p22.1		rs17026114-A	0.96	3E-7		0.074	[0.047-0.101] unit increase	Affymetrix [NR]	N
895	chr2	40743182	40743183	rs17026114	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	2p22.1		rs17026114-A	0.96	2E-6		0.069	[0.042-0.096] unit increase	Affymetrix [NR]	N
895	chr2	40743182	40743183	rs17026114	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p22.1	SLC8A1	rs17026114-G	0.177	7E-8	(Hispanic/Latino)	1.8872	[1.2-2.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
895	chr2	40743182	40743183	rs17026114	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p22.1	SLC8A1	rs17026114-G	0.075	5E-19		1.2275	[0.96-1.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
895	chr2	40748004	40748005	rs4952632	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p22.1	NR	rs4952632-?	NR	6E-8		1.704848	[1.09-2.32] unit increase	Illumina [26703325] (imputed)	N
895	chr2	40748004	40748005	rs4952632	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	2p22.1	LOC400950, SLC8A1	rs4952632-C	0.389	6E-13	(PR)	2.325	[NR] unit increase	Illumina [~ 2500000]	N
895	chr2	40748515	40748516	rs2193566	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs2193566-G	0.01394	4E-9	(EPHX1)	4.812	NR unit increase	Illumina [1671387] (imputed)	N
895	chr2	40748515	40748516	rs2193566	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs2193566-G	0.01394	1E-8	(PON1)	0.1415	NR unit increase	Illumina [1671387] (imputed)	N
895	chr2	40752056	40752057	rs34239925	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	2p22.1	SLC8A1	rs34239925-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
895	chr2	40752981	40752982	rs12997023	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	2p22.1	NR	rs12997023-?	NR	4E-10		1.805339	[1.24-2.37] unit decrease	Illumina [26659972] (imputed)	N
895	chr2	40752981	40752982	rs12997023	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	2p22.1	SLC8A1	rs12997023-C	0.049	5E-14		1.69	[1.26-2.12] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
895	chr2	40753602	40753603	rs13026826	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p22.1	SLC8A1	rs13026826-G	0.950657	4E-8	(328 ms)	0.0702626	[0.045-0.096] unit increase	Affymetrix [10000000] (imputed)	N
895	chr2	40753602	40753603	rs13026826	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p22.1	SLC8A1	rs13026826-G	0.950657	1E-9	(340 ms)	0.077394	[0.052-0.103] unit increase	Affymetrix [10000000] (imputed)	N
895	chr2	40753602	40753603	rs13026826	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p22.1	SLC8A1	rs13026826-G	0.950657	1E-8	(342 ms)	0.0733972	[0.048-0.099] unit increase	Affymetrix [10000000] (imputed)	N
895	chr2	40754313	40754314	rs35450971	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2p22.1	SLC8A1	rs35450971-T	0.935	5E-9	(women)	0.085	[0.058-0.112] unit increase	Affymetrix [~ 9000000] (imputed)	N
895	chr2	40754313	40754314	rs35450971	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2p22.1	SLC8A1	rs35450971-T	0.935	3E-9		0.062	[0.042-0.082] unit increase	Affymetrix [~ 9000000] (imputed)	N
895	chr2	40754313	40754314	rs35450971	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2p22.1	SLC8A1	rs35450971-T	0.79	8E-11		1.71	[1.2-2.22] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
895	chr2	40757569	40757570	rs17026148	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	2p22.1	SLC8A1	rs17026148-A	0.17	2E-9	(Hispanic)	1.98	[1.33-2.63] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
895	chr2	40757790	40757791	rs13017846	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	2p22.1	NR	rs13017846-?	NR	3E-10		1.908242	[1.32-2.5] unit decrease	Illumina [26659972] (imputed)	N
895	chr2	40757790	40757791	rs13017846	22726844	Kim JW	2012-06-20	Am J Hum Genet	A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.	QT interval	6,805 Korean ancestry individuals	7,373 East Asian ancestry individuals	2p22.1	SLC8A1	rs13017846-G	0.42	8E-14		0.069	[0.038-0.100] unit decrease	Affymetrix [352228]	N
895	chr2	40758364	40758365	rs76964356	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs76964356-G	0.01045	1E-8	(FTH1)	0.2061	NR unit increase	Illumina [1671387] (imputed)	N
895	chr2	40760964	40760965	rs17026156	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p22.1	NR	rs17026156-?	NR	2E-7		1.74031	[1.09-2.39] unit increase	Illumina [26703325] (imputed)	N
895	chr2	40760964	40760965	rs17026156	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	PR interval	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	2p22.1	SLC8A1	rs17026156-C	0.39	3E-14		2.08	[NR] unit increase	Affymetrix [2100000] (imputed)	N
896	chr2	40770052	40770053	rs11900510	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	2p22.1	SLC8A1	rs11900510-C	0.4	4E-7		1.03	[1.02-1.04]	Affymetrix, Illumina [2539801] (imputed)	N
896	chr2	40793106	40793107	rs185374745	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p22.1	NR	rs185374745-?	NR	2E-8				Illumina [7760689] (imputed)	N
896	chr2	40849490	40849491	rs9677294	34719679	Hu SH	2021-10-31	Cell Discov	Discovery of new genetic loci for male sexual orientation in Han population.	Male sexual orientation	188,825 European ancestry individuals, 4,791 Han Chinese ancestry individuals	NA	2p22.1		rs9677294-T	NR	2E-8		0.004	[0.0026-0.0054] unit increase	Illumina [NR] (imputed)	N
896	chr2	40880042	40880043	rs12469284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p22.1		rs12469284-?	NR	2E-21				NR [~ 8900000] (imputed)	N
896	chr2	40891700	40891701	rs148732433	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p22.1	Intergenic	rs148732433-T	0.992	2E-6	(AA)	0.466	NR unit increase	Illumina [NR] (imputed)	N
897	chr2	40909332	40909333	rs7584710	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p22.1	SLC8A1	rs7584710-C	0.639147	3E-14		0.014671	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
897	chr2	40909332	40909333	rs7584710	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p22.1		rs7584710-?	NR	8E-27		0.0227062	[0.019-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
897	chr2	40914215	40914216	rs17539694	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	2p22.1	SLC8A1	rs17539694-C	0.3638	2E-6		0.0075	[0.0044-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
897	chr2	40941612	40941613	rs12469493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p22.1		rs12469493-T	NR	3E-8		0.0071	[0.0046-0.0096] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
897	chr2	40943163	40943164	rs115249525	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p22.1	AC007317.1	rs115249525-T	0.0121	3E-7		0.2548	[0.16-0.35] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
898	chr2	41042643	41042644	rs2045340	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2p22.1	LOC105374497	rs2045340-T	0.3403	8E-7		1.1146	NR	Affymetrix, Illumina [30341632] (imputed)	N
898	chr2	41067985	41067986	rs7576600	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	2p22.1	NR	rs7576600-G	NR	3E-7	(phenotype 2)	5.26	[NR]	Illumina [> 8000000] (imputed)	N
899	chr2	41159816	41159816	rs376145170	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p22.1	NR	rs376145170-G	0.0453	1E-8	(OCIAD2)	0.007237	NR unit increase	Illumina [1671387] (imputed)	N
899	chr2	41198010	41198011	rs13023575	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	2p22.1	intergenic	rs13023575-?	NR	8E-6		0.0087	[0.005-0.0124] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
899	chr2	41273630	41273631	rs17027130	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (camptothecin)	59 Japanese ancestry cases, 155 Japanese ancestry controls	NA	2p22.1	LOC729984	rs17027130-C	0.387	3E-6	(Allelic model)	2.865	[1.844-4.452]	Illumina [733202]	N
900	chr2	41321360	41321361	rs148184576	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	2p22.1	NR	rs148184576-A	0.94	3E-6		3.59	[2.09-6.16]	Illumina [17125421] (imputed)	N
900	chr2	41343220	41343221	rs2194437	25431337	Bouzigon E	2014-11-27	Clin Exp Allergy	A common variant in RAB27A gene is associated with fractional exhaled nitric oxide levels in adults.	Fractional exhaled nitric oxide levels	610 European ancestry adult individuals, 601 Hutterite (founder/genetic isolate) adult individuals	450 Talana (founder/genetic isolate) adult individuals, 8,858 European ancestry children	2p22.1	SLC8A1, HNRNPA1P57	rs2194437-C	0.04	9E-7	(adults)	4.92	[NR] Z score decrease	Affymetrix, Illumina [247463] (imputed)	N
900	chr2	41366150	41366151	rs7562658	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	2p22.1	NR	rs7562658-?		6E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
900	chr2	41366150	41366151	rs7562658	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	2p22.1	NR	rs7562658-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
900	chr2	41383716	41383717	rs10469868	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	2p22.1	SLC8A1	rs10469868-?	NR	8E-6			[NR]	Illumina [283437]	N
900	chr2	41385366	41385367	rs7602499	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p22.1	SLC8A1, C2orf91	rs7602499-T	0.3536	4E-8		1.0225505		Affymetrix [11880941] (imputed)	N
900	chr2	41388847	41388848	rs6725031	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p22.1	SLC8A1, C2orf91	rs6725031-T	0.6477	4E-8		0.00976359	[0.0063-0.0132] unit decrease	Affymetrix [11880941] (imputed)	N
901	chr2	41445678	41445679	rs144855337	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p22.1	Intergenic	rs144855337-T	0.994	4E-6		0.076	unit increase	Illumina [NR] (imputed)	N
901	chr2	41452491	41452492	rs138154342	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	2p22.1	AC009223.2	rs138154342-G	0.01	1E-6		14.366	[8.54-20.2] unit decrease	Illumina [NR] (imputed)	N
901	chr2	41487070	41487071	rs4140752	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	2p22.1	LOC400950, SLC8A1	rs4140752-?		8E-7	(IL-6 response)			Illumina [NR]	N
901	chr2	41506888	41506889	rs10202299	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	2p22.1	NR	rs10202299-T	0.53	9E-6		1.1	NR	Affymetrix, Illumina [6957974] (imputed)	N
902	chr2	41606846	41606847	rs6737264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p22.1	Intergenic	rs6737264-T	0.6465	3E-10	(MTAG)	0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
902	chr2	41606930	41606931	rs6708515	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p22.1	NR	rs6708515-A	0.340954	2E-8		0.03687582	[0.024-0.05] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
902	chr2	41606930	41606931	rs6708515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p22.1	Intergenic	rs6708515-A	0.3534	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
902	chr2	41615489	41615490	rs6544414	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p22.1	NR	rs6544414-?	NR	4E-6		4.588	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
902	chr2	41616345	41616346	rs967569	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p22.1	NR	rs967569-T	NR	8E-10		6.141	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
902	chr2	41637687	41637688	rs10169594	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p22.1		rs10169594-C	0.36	1E-9				NR [NR] (imputed)	N
902	chr2	41637687	41637688	rs10169594	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p22.1		rs10169594-C	0.36	5E-15		0.012	% increase	NR [NR] (imputed)	N
902	chr2	41637687	41637688	rs10169594	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p22.1	C2orf91	rs10169594-T	0.636913	3E-8		0.00788339	[0.0051-0.0107] unit decrease	Affymetrix [12370749]	N
902	chr2	41637687	41637688	rs10169594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p22.1		rs10169594-?	NR	1E-9				NR [~ 8900000] (imputed)	N
902	chr2	41637687	41637688	rs10169594	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p22.1	Intergenic	rs10169594-T	0.6366	4E-8	(MTAG)	0.0075	[0.0048-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
902	chr2	41673744	41673745	rs1396141	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p22.1	NR	rs1396141-T	NR	7E-13		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
902	chr2	41678785	41678786	rs140756008	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		2p22.1	intergenic	rs140756008-A	0.0119391	9E-6		1.82824	[1.03-2.62] unit increase	Illumina [640625] (imputed)	N
903	chr2	41688440	41688440	rs3035165	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p22.1	intergenic	rs3035165-T	0.4722	7E-14		0.0144	[0.011-0.018] unit increase	Affymetrix [18391927] (imputed)	N
903	chr2	41712848	41712849	rs2063177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p22.1	NR	rs2063177-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
903	chr2	41712848	41712849	rs2063177	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p22.1	NA	rs2063177-A	0.3534	2E-11		0.0119	[0.0084-0.0154] unit increase	NR [~ 27400000] (imputed)	N
903	chr2	41737199	41737200	rs12105701	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p21	NR	rs12105701-?		5E-9		0.0128825	[0.0086-0.0172] unit decrease	Affymetrix [19400418] (imputed)	N
903	chr2	41774144	41774145	rs11124822	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p21	EML4	rs11124822-?	NR	6E-6	(TAG 48:0)	0.17878187	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
903	chr2	41805819	41805820	rs12712784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p21	Intergenic	rs12712784-T	0.3883	1E-8	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr2	41805819	41805820	rs12712784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p21	Intergenic	rs12712784-T	0.3885	5E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
903	chr2	41810060	41810061	rs7556950	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2p21	intergenic	rs7556950-C	0.099	8E-6	(AA)	0.655	unit increase	Illumina [at least 5086170] (imputed)	N
904	chr2	41846447	41846448	rs541962521	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p21	AC010739.1	rs541962521-T	0.9985	3E-6		0.7694	[0.44-1.09] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
904	chr2	41881074	41881075	rs187890132	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p21	AC010739.1	rs187890132-A	0.9804	6E-6		0.1537	[0.087-0.22] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
905	chr2	41977242	41977243	rs56855426	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p21		rs56855426-G	NR	4E-6		4.5943327	z score increase	Affymetrix, Illumina [NR] (imputed)	N
905	chr2	42004996	42004997	rs719593	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	2p21	intergenic	rs719593-T	0.86	5E-6	(maternal criticism)	2.05	[NR] unit decrease	Perlegen [429901]	N
905	chr2	42016862	42016863	rs4952375	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	2p21	snoZ247, LINC01913	rs4952375-A	NR	4E-8		1.39	[1.23-1.56]	Affymetrix [9737707] (imputed)	N
905	chr2	42016862	42016863	rs4952375	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	2p21	NR	rs4952375-A	0.227	1E-6	(Latino)	1.37	[1.20-1.55]	Affymetrix [9737707] (imputed)	N
906	chr2	42080623	42080624	rs4305317	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	2p21	RPS12P4	rs4305317-?	NR	2E-6	(ACPA-negative RA vs controls)	1.45	[1.25-1.69]	Illumina [1723056] (imputed)	N
906	chr2	42080623	42080624	rs4305317	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	2p21	LDHAL3	rs4305317-?	NR	4E-8	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
906	chr2	42109470	42109471	rs13426621	26421299	Li J	2015-09-03	Biomed Res Int	Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort.	Cingulate cortical amyloid beta load	215 European ancestry early mild cognitive impairment cases, 152 European ancestry late mild cognitive impairment cases, 45 European ancestry Alzheimer disease cases, 190  European ancestry controls	NA	2p21	LOC388942	rs13426621-?	NR	7E-6				Illumina [582718]	N
906	chr2	42145216	42145217	rs2888814	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	LOC101929723	rs2888814-C	0.385083	1E-9		0.0117547	[0.008-0.0156] unit increase	NR [13737936] (imputed)	N
906	chr2	42145216	42145217	rs2888814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p21		rs2888814-?	NR	2E-60				NR [~ 8900000] (imputed)	N
906	chr2	42149318	42149319	rs58470117	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	C2orf91	rs58470117-G	0.706819	5E-15	(2 ms)	0.0469463	[0.035-0.059] unit increase	Affymetrix [10000000] (imputed)	N
906	chr2	42149318	42149319	rs58470117	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	C2orf91	rs58470117-G	0.706819	1E-15	(0 ms)	0.0477585	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
906	chr2	42149318	42149319	rs58470117	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	C2orf91	rs58470117-G	0.706819	1E-15	(-2 ms)	0.0478002	[0.036-0.06] unit increase	Affymetrix [10000000] (imputed)	N
906	chr2	42149318	42149319	rs58470117	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	C2orf91	rs58470117-G	0.706819	1E-14	(-4 ms)	0.0459468	[0.034-0.058] unit increase	Affymetrix [10000000] (imputed)	N
906	chr2	42149318	42149319	rs58470117	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	C2orf91	rs58470117-G	0.706819	1E-13	(-6 ms)	0.0439771	[0.032-0.056] unit increase	Affymetrix [10000000] (imputed)	N
906	chr2	42158303	42158304	rs17029056	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p21	NR	rs17029056-C	0.2148	4E-6	(EA)	0.0354	[0.02-0.05] unit decrease	Illumina [~ 11800000] (imputed)	N
906	chr2	42167322	42167323	rs13419021	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p21	c2orf91	rs13419021-?	NR	2E-30		1.097213	NR	Affymetrix [9154080] (imputed)	N
906	chr2	42179142	42179143	rs62140163	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2orf91	rs62140163-?	NR	7E-9	(male)	3.44563	[NR] unit decrease	Affymetrix [NR] (imputed)	N
906	chr2	42179142	42179143	rs62140163	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C2orf91	rs62140163-?	NR	1E-9		3.8696	[NR] unit decrease	Affymetrix [NR] (imputed)	N
906	chr2	42181678	42181679	rs6740960	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p21		rs6740960-A	0.49002849	3E-36				Illumina [7417619] (imputed)	N
906	chr2	42181678	42181679	rs6740960	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	2p21	PKDCC	rs6740960-?	NR	3E-14	(facial module 26)			Illumina [9478608] (imputed)	N
906	chr2	42181678	42181679	rs6740960	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	2p21	C2orf91, PKDCC	rs6740960-T		6E-13	(All)			NR [8012124] (imputed)	N
906	chr2	42181678	42181679	rs6740960	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	2p21	C2orf91, PKDCC	rs6740960-T		2E-10	(EA)			NR [8012124] (imputed)	N
906	chr2	42181678	42181679	rs6740960	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2p21	C2orf91, PKDCC	rs6740960-?	NR	4E-13		1.117	[1.084-1.151]	Illumina [13537761] (imputed)	N
906	chr2	42198216	42198217	rs4952552	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	2p21	NR	rs4952552-?	NR	3E-12	(Quadrant II (Nose), Segment 43)	0.04007594	NR unit decrease	NR [7417619] (imputed)	N
906	chr2	42198216	42198217	rs4952552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs4952552-?	NR	1E-11				NR [~ 8900000] (imputed)	N
906	chr2	42202922	42202923	rs4952558	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p21	NR	rs4952558-C	0.163321	7E-12		0.028272	[0.02-0.036] unit decrease	NR [19129689] (imputed)	N
907	chr2	42208110	42208111	rs35708913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p21		rs35708913-?	NR	4E-20				NR [~ 8900000] (imputed)	N
907	chr2	42214197	42214198	rs62140201	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Chitinase-3-like protein 1 levels	21,758 European ancestry individuals	9,173 individuals	2p21		rs62140201-A	0.029	3E-6		0.1457	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
907	chr2	42216385	42216386	rs35657711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs35657711-?	NR	1E-117				NR [~ 8900000] (imputed)	N
907	chr2	42218357	42218358	rs7576689	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs7576689-?	NR	1E-104		0.0524198	[0.048-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42218357	42218358	rs7576689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p21	C2orf91	rs7576689-C	0.779517	4E-19	(men)	0.0553768	[0.043-0.067] unit decrease	NR [17166351] (imputed)	N
907	chr2	42218357	42218358	rs7576689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p21	C2orf91	rs7576689-C	0.778816	2E-38		0.0521948	[0.044-0.06] unit decrease	NR [17166351] (imputed)	N
907	chr2	42218357	42218358	rs7576689	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p21	C2orf91	rs7576689-C	0.778204	2E-19	(women)	0.0502867	[0.039-0.061] unit decrease	NR [17166351] (imputed)	N
907	chr2	42220434	42220435	rs35531047	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	C2orf91	rs35531047-T	0.783397	6E-81		0.0432766	[0.039-0.048] unit decrease	NR [13737936] (imputed)	N
907	chr2	42231892	42231893	rs6758586	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs6758586-?	NR	6E-56		0.0615848	[0.054-0.069] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42238621	42238622	rs10189338	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p21		rs10189338-C	0.293853428	2E-8				Illumina [7417619] (imputed)	N
907	chr2	42242365	42242366	rs563360564	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs563360564-?	NR	9E-59		0.0629472	[0.055-0.071] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42242616	42242617	rs78254601	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p21	NR	rs78254601-T	0.1371	5E-9		0.0514	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
907	chr2	42243849	42243850	rs4952564	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p21	PKDCC	rs4952564-A	0.681	7E-12		0.0172	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
907	chr2	42243849	42243850	rs4952564	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p21	PKDCC	rs4952564-A	0.681	8E-10		0.0153	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
907	chr2	42243849	42243850	rs4952564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p21		rs4952564-?	NR	8E-10				NR [~ 8900000] (imputed)	N
907	chr2	42245268	42245269	rs115541976	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC013480.1	rs115541976-?	NR	4E-9		3.56686	[NR] unit decrease	Affymetrix [NR] (imputed)	N
907	chr2	42245268	42245269	rs115541976	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC013480.1	rs115541976-?	NR	2E-8	(male)	3.18215	[NR] unit decrease	Affymetrix [NR] (imputed)	N
907	chr2	42250548	42250549	rs7584262	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2p21	PKDCC	rs7584262-T	0.23	1E-9		0.04	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
907	chr2	42254355	42254356	rs2165239	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2p21	PKDCC	rs2165239-T	0.230635	6E-9		0.0475	[0.031-0.064] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
907	chr2	42267141	42267141	rs781293043	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs781293043-?	NR	4E-65		0.0628363	[0.055-0.07] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42267461	42267462	rs11887431	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs11887431-?	NR	5E-107		0.0522198	[0.047-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42267689	42267690	rs72613886	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	PKDCC	rs72613886-A	0.86872	2E-20		0.0262104	[0.021-0.032] unit increase	NR [13737936] (imputed)	N
907	chr2	42270726	42270727	rs79964014	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs79964014-?	NR	1E-50		0.0437803	[0.038-0.05] unit increase	Affymetrix [20259828] (imputed)	N
907	chr2	42272983	42272984	rs729559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs729559-G	0.1585	1E-9	(CYP2D6)	0.04622	NR unit increase	Illumina [1671387] (imputed)	N
907	chr2	42276283	42276284	rs185375897	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PKDCC	rs185375897-?	NR	9E-10	(male)	4.1667	[NR] unit decrease	Affymetrix [NR] (imputed)	N
907	chr2	42276283	42276284	rs185375897	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PKDCC	rs185375897-?	NR	1E-10		4.69376	[NR] unit decrease	Affymetrix [NR] (imputed)	N
907	chr2	42276920	42276921	rs4952590	19961619	Castro-Giner F	2009-12-06	BMC Med Genet	A pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS).	Atopy	75 European ancestry atopy and asthma cases, 75 European ancestry atopy only cases, 75 European ancestry controls	429 European ancestry atopy cases, 222 European ancestry controls	2p21	SGK493	rs4952590-?	0.86	2E-6		1.92	[1.27-2.86]	Illumina [NR]	N
907	chr2	42279966	42279967	rs12623480	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p21		rs12623480-T	0.31	2E-32		11.84	z score increase	Affymetrix [9061022] (imputed)	N
907	chr2	42279966	42279967	rs12623480	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p21	NR	rs12623480-T	0.3195	1E-17				NR [9056863] (imputed)	N
907	chr2	42279966	42279967	rs12623480	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p21		rs12623480-?	NR	3E-27				NR [9705931] (imputed)	N
907	chr2	42280065	42280066	rs78572108	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p21	NR	rs78572108-A	0.1289	3E-8	(European)	0.0539	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
907	chr2	42281311	42281312	rs34372645	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKDCC	5,343 Icelandic ancestry individuals	NA	2p21		rs34372645-A	0.02714	1E-37		0.654624	[0.55-0.75] unit increase	Illumina [7506463] (imputed)	N
907	chr2	42281655	42281656	rs72794538	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p21	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs72794538-?		9E-10				NR [7428630] (imputed)	N
907	chr2	42281655	42281656	rs72794538	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p21	PKDCC	rs72794538-?		2E-12				NR [7428630] (imputed)	N
907	chr2	42282828	42282829	rs11902166	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p21	NR	rs11902166-A	0.219353	7E-13		0.01608	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
907	chr2	42285574	42285575	rs2424	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	2p21		rs2424-A	0.23	2E-6				NR [13131314] (imputed)	N
907	chr2	42285574	42285575	rs2424	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p21		rs2424-A	0.23	1E-92		20.42	z score increase	Affymetrix [9061022] (imputed)	N
907	chr2	42285574	42285575	rs2424	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p21		rs2424-A	0.23	4E-40		13.26	z score increase	Affymetrix [9061022] (imputed)	N
907	chr2	42285574	42285575	rs2424	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p21	NR	rs2424-A	0.1983	1E-17				NR [9056863] (imputed)	N
907	chr2	42285574	42285575	rs2424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PKDCC	rs2424-A	0.201329	2E-10		0.017545912	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
907	chr2	42285574	42285575	rs2424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PKDCC	rs2424-A	0.201314	7E-10		0.01696718	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
907	chr2	42285574	42285575	rs2424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs2424-A	0.20002	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
907	chr2	42285574	42285575	rs2424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs2424-A	0.200033	4E-11				Affymetrix, Illumina [24558453] (imputed)	N
907	chr2	42285574	42285575	rs2424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p21	NR	rs2424-A	0.203637	1E-13		0.017008	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
907	chr2	42287305	42287306	rs988958	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	2p21	PKDCC	rs988958-G	0.750	2E-10		1.3	[NR]	Illumina [8207076] (imputed)	N
907	chr2	42287930	42287931	rs72794541	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PKDCC	5,343 Icelandic ancestry individuals	NA	2p21		rs72794541-T	0.2146	1E-11		0.137755	[0.098-0.178] unit increase	Illumina [7506463] (imputed)	N
907	chr2	42288319	42288320	rs57299708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs57299708-?	NR	2E-29				NR [~ 8900000] (imputed)	N
907	chr2	42303113	42303114	rs893812	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p21	PKDCC	rs893812-C	0.73078125	6E-18	(PKDCC, 8664_36_3)	0.23617005	[0.18-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
907	chr2	42303498	42303499	rs12329062	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs12329062-?	NR	2E-30		0.0650373	[0.054-0.076] unit decrease	Affymetrix [20259828] (imputed)	N
907	chr2	42325860	42325861	rs35607741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p21	NR	rs35607741-C	NR	1E-12		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
907	chr2	42325860	42325861	rs35607741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p21	NR	rs35607741-C	NR	1E-14		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
907	chr2	42328574	42328575	rs6715862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p21		rs6715862-G	0.504938	2E-9		0.0132865915	[0.0089-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
907	chr2	42329328	42329329	rs7570219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p21		rs7570219-G	NR	4E-15		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
908	chr2	42349189	42349190	rs7593032	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	2p21	LOC102723824	rs7593032-T	0.713	4E-6	(Female)	0.631	[0.52-0.74]	NR [up to 1668434] (imputed)	N
908	chr2	42352566	42352567	rs11681462	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2p21	AC083949.1	rs11681462-A	0.7885	6E-10		0.1325	[0.091-0.174] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
908	chr2	42355946	42355947	rs963406	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2p21		rs963406-?	NR	9E-8		25.6	[16.23-34.97] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
908	chr2	42355946	42355947	rs963406	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2p21	PKDCC, EML4	rs963406-A	0.13	8E-8	(EA)	24.23	[15.39-33.07] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
908	chr2	42355946	42355947	rs963406	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2p21	PKDCC, EML4	rs963406-A	0.12	3E-8		23.13	[14.94-31.32] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
908	chr2	42382774	42382775	rs13021948	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p21	NR	rs13021948-G	0.979066	5E-9		0.0383351	[0.025-0.051] unit decrease	NR [NR]	N
908	chr2	42404072	42404073	rs71441185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p21		rs71441185-G	NR	2E-9		0.0388	[0.026-0.051] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
908	chr2	42419828	42419829	rs10193935	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p21	Intergenic	rs10193935-?	NR	1E-6		1.532	[NR]	Affymetrix [492217] (imputed)	N
908	chr2	42433246	42433247	rs12466981	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2p21	EML4	rs12466981-C	0.73	5E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
908	chr2	42454460	42454461	rs12995492	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p21	NR	rs12995492-?	NR	8E-6		0.0077523	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
909	chr2	42470793	42470794	rs6713242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p21		rs6713242-T	NR	4E-20		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
909	chr2	42494353	42494354	rs10460533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p21		rs10460533-?	NR	1E-26				NR [~ 8900000] (imputed)	N
909	chr2	42510017	42510018	rs6736913	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p21	NR	rs6736913-G	NR	1E-15		0.0712	[0.054-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p21	NR	rs6736913-A	0.0211619	1E-8		0.0619186	[0.041-0.082] unit increase	Affymetrix [16577313] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p21	NR	rs6736913-A	0.0209458	2E-32		0.032452	[0.027-0.038] unit increase	Affymetrix [16582909] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p21	NR	rs6736913-A	0.020645	4E-21		0.0368328	[0.028-0.045] unit increase	Affymetrix [16585854] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p21	NR	rs6736913-A	0.0212583	2E-14		0.0303149	[0.023-0.038] unit increase	Affymetrix [16582621] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p21	NR	rs6736913-A	0.0209458	1E-25		0.0322807	[0.026-0.039] unit increase	Affymetrix [16582965] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p21	NR	rs6736913-A	0.020645	3E-13		0.03368	[0.024-0.043] unit increase	Affymetrix [16585866] (imputed)	N
909	chr2	42510017	42510018	rs6736913	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p21	NR	rs6736913-A	0.0212583	3E-15		0.0329121	[0.025-0.041] unit increase	Affymetrix [16582614] (imputed)	N
909	chr2	42510017	42510018	rs6736913	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	2p21	NR	rs6736913-A	0.016985168174603174	3E-15	(EA)	2.32	[2.11-2.53]	Illumina [6576307] (imputed)	N
909	chr2	42527765	42527766	rs12464308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p21	EML4	rs12464308-C	NR	1E-8		0.0179068	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
909	chr2	42536587	42536588	rs13398148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p21	EML4	rs13398148-A	NR	9E-10		0.0250853	[0.017-0.033] unit decrease	Affymetrix [321016] (imputed)	N
909	chr2	42537994	42537995	rs6728830	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p21	EML4	rs6728830-C	0.96	2E-8		1.02	[0.67-1.37] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
909	chr2	42537994	42537995	rs6728830	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p21	EML4	rs6728830-C	0.9638	2E-8		1.0273	[0.67-1.39] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
909	chr2	42575819	42575820	rs10202845	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	COX7A2L	rs10202845-A	0.8867	5E-22		0.0288	[0.023-0.035] unit increase	Affymetrix [18391927] (imputed)	N
909	chr2	42575819	42575820	rs10202845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs10202845-?	NR	2E-26				NR [~ 8900000] (imputed)	N
910	chr2	42599604	42599605	rs72798544	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	2p21	COX7A2L, KCNG3	rs72798544-G	0.0265	2E-7		1.3642566	[1.22-1.53]	Illumina [at least 560000] (imputed)	N
910	chr2	42602386	42602387	rs12998038	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p21	COX7A2L	rs12998038-C	0.741297	1E-9		0.0132202	[0.0089-0.0175] unit decrease	Affymetrix [NR] (imputed)	N
910	chr2	42604080	42604081	rs13426988	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	2p21		rs13426988-G	0.8523	2E-6	(East Asian)	1.1	[1.06-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
910	chr2	42617548	42617549	rs13417597	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p21	COX7A2L	rs13417597-G	NR	2E-8		0.018396	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
910	chr2	42638056	42638057	rs222471	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p21	NR	rs222471-C	NR	1E-10		0.0226	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
910	chr2	42648978	42648979	rs222487	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2p21	COX7A2L	rs222487-A	0.4135	3E-6		0.0385	[0.022-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
910	chr2	42653494	42653495	rs222482	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	2p21		rs222482-C	0.27	5E-8		0.028	[0.018-0.038] L decrease	Affymetrix [NR] (imputed)	N
910	chr2	42692621	42692622	rs112952987	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	2p21		rs112952987-G	0.94	3E-8		0.05	[0.032-0.068] L increase	Affymetrix [NR] (imputed)	N
910	chr2	42708404	42708405	rs1979755	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p21	KCNG3	rs1979755-C	0.549	4E-7		0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
910	chr2	42708404	42708405	rs1979755	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p21	KCNG3	rs1979755-C	0.547	8E-7	(EA)	0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
910	chr2	42718897	42718898	rs2029899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p21	Intergenic	rs2029899-A	0.416	1E-8	(MTAG)	0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
910	chr2	42726885	42726886	rs7581704	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p21	NA	rs7581704-C	0.7589	2E-10	(Female)	1.057	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
911	chr2	42813246	42813247	rs6734957	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p21	NR	rs6734957-G	0.7612	2E-9		1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
912	chr2	42891599	42891600	rs2178365	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs2178365-G	0.1864	4E-9	(HAAO)	0.139	NR unit decrease	Illumina [1671387] (imputed)	N
912	chr2	42939350	42939351	rs7580766	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p21	NR	rs7580766-G	NR	6E-10		0.011	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
912	chr2	42978231	42978232	rs6717144	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	2p21	NR	rs6717144-T	0.3	3E-6		2.72	[1.62-3.82] g increase	Illumina [509842]	N
912	chr2	42981238	42981239	rs930421	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2p21	OXER1	rs930421-?	NR	6E-6	(binary)			Perlegen [429981]	N
912	chr2	42984339	42984340	rs7605368	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	2p21	NR	rs7605368-A	0.23	2E-6	(Female)	2.76	[1.7-3.82] g increase	Illumina [509842]	N
912	chr2	42985802	42985803	rs6719977	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	2p21	OXER1	rs6719977-?	NR	2E-6	(binary)			Perlegen [429981]	N
913	chr2	42995839	42995840	rs3755540	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs3755540-T	0.27	1E-8	(HAAO)	0.1201	NR unit decrease	Illumina [1671387] (imputed)	N
913	chr2	43008382	43008383	rs62143187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p21	HAAO	rs62143187-G	0.257961	2E-11		0.017087225	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr2	43015718	43015719	rs3816183	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	2p21	HAAO	rs3816183-T	0.246	4E-34		1.58	[NR]	Illumina [8207076] (imputed)	N
913	chr2	43020913	43020914	rs2278581	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs2278581-A	0.2213	3E-9	(HAAO)	0.1318	NR unit decrease	Illumina [1671387] (imputed)	N
913	chr2	43021192	43021193	rs1065643	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2p21	NR	rs1065643-G	0.09075	1E-6		0.4449	[0.27-0.62] unit increase	Illumina [~ 600000] (imputed)	N
913	chr2	43050055	43050056	rs13035343	32558222	Okamura K	2020-06-18	Pigment Cell Melanoma Res	Genome-wide association study identifies CDH13 as a susceptibility gene for rhododendrol-induced leukoderma.	Leukoderma in response to rhododendrol	147 Japanese ancestry cases, 112 Japanese ancestry controls	NA	2p21	TRNAI-UAU, LOC100128048	rs13035343-?	NR	5E-6		6.3	[2.7-15]	Illumina [1057565]	N
913	chr2	43057205	43057206	rs6544602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p21	AC098824.6	rs6544602-G	0.442112	4E-10		0.014177056	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
913	chr2	43064554	43064555	rs6738169	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p21	NR	rs6738169-C	NR	6E-9		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
913	chr2	43073246	43073247	rs57242328	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p21	AC098824.6	rs57242328-A	0.3317	2E-9		0.0368	[0.025-0.049] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr2	43073547	43073548	rs4953671	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2p21		rs4953671-G	0.671879	3E-7		1.0826	NR	Affymetrix [7846216] (imputed)	N
913	chr2	43078757	43078758	rs13403122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p21	HAAO, ZFP36L2	rs13403122-C		9E-9		0.25	unit increase	Affymetrix [at least 2696785] (imputed)	N
913	chr2	43078757	43078758	rs13403122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p21	HAAO, ZFP36L2	rs13403122-C		3E-7		0.209	unit increase	Affymetrix [at least 2696785] (imputed)	N
913	chr2	43078757	43078758	rs13403122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p21	HAAO, ZFP36L2	rs13403122-C		1E-6	(EA)	0.21	unit increase	Affymetrix [at least 2696785] (imputed)	N
913	chr2	43078757	43078758	rs13403122	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p21	HAAO, ZFP36L2	rs13403122-C		2E-13		0.195	unit increase	Affymetrix [at least 2696785] (imputed)	N
913	chr2	43118871	43118872	rs7566761	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	2p21	AC098824.6a	rs7566761-A		8E-13		7.18	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
913	chr2	43120748	43120749	rs11685652	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p21	HAAO	rs11685652-G	0.8091	8E-11				Affymetrix, Illumina [9900000] (imputed)	N
913	chr2	43120748	43120749	rs11685652	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p21	HAAO	rs11685652-G	NR	8E-12		0.0511	[0.036-0.066] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
913	chr2	43120748	43120749	rs11685652	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2p21	HAAO	rs11685652-G	0.807	6E-13		0.0532	[0.039-0.068] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
914	chr2	43132223	43132224	rs73923006	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	2p21	HAAO	rs73923006-G	NR	2E-14		0.0548	[0.041-0.069] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
914	chr2	43132523	43132524	rs34945304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs34945304-?	NR	7E-8				NR [~ 8900000] (imputed)	N
914	chr2	43137454	43137455	rs7570920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p21	NR	rs7570920-A	0.50635	3E-10		0.012007	[0.0083-0.0157] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	5E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	1E-8				Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	5E-9				Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?		9E-12	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	8E-11				Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	3E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	1E-14	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141073	43141074	rs73923009	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p21	KCNG3, DYNC2LI1	rs73923009-?	NR	1E-11				Affymetrix, Illumina [18800000] (imputed)	N
914	chr2	43141484	43141485	rs11679640	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2p21	HAAO	rs11679640-C	0.8	4E-8	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
914	chr2	43141484	43141485	rs11679640	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2p21	HAAO	rs11679640-C	0.8	2E-6				Affymetrix, Illumina [14227402] (imputed)	N
914	chr2	43152303	43152304	rs17682575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p21		rs17682575-T	0.20152	8E-11		0.018023908	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr2	43152303	43152304	rs17682575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p21		rs17682575-?	NR	1E-11				NR [~ 8900000] (imputed)	N
914	chr2	43157796	43157797	rs1867852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs1867852-?	NR	9E-8				NR [~ 8900000] (imputed)	N
914	chr2	43158174	43158175	rs72803822	34023362	Li B	2021-05-20	J Invest Dermatol	A Genome-Wide Association Study Finds Variants at 2p21 Associated with Self-Reported Sensitive Skin in the Han Chinese population.	Sensitive skin	1,872 Han Chinese ancestry individuals	817 Han Chinese ancestry individuals	2p21		rs72803822-A	0.502	4E-9		1.42	[1.25-1.56]	Affymetrix [530088] (imputed)	N
914	chr2	43158174	43158175	rs72803822	34023362	Li B	2021-05-20	J Invest Dermatol	A Genome-Wide Association Study Finds Variants at 2p21 Associated with Self-Reported Sensitive Skin in the Han Chinese population.	Sensitive skin	1,192 Han Chinese ancestry females	509 Han Chinese ancestry females			rs72803822-A	NR	3E-6		1.41	[1.22-1.63]	Affymetrix [NR] (imputed)	N
914	chr2	43161179	43161180	rs12712870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p21		rs12712870-G	0.693148	2E-12		0.0164713	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr2	43161179	43161180	rs12712870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p21		rs12712870-G	0.693155	3E-11		0.015841825	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr2	43161179	43161180	rs12712870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p21		rs12712870-?	NR	9E-11				NR [~ 8900000] (imputed)	N
914	chr2	43161179	43161180	rs12712870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p21		rs12712870-?	NR	3E-14				NR [~ 8900000] (imputed)	N
914	chr2	43167877	43167878	rs76326501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p21		rs76326501-?	NR	3E-17				NR [~ 8900000] (imputed)	N
914	chr2	43167877	43167878	rs76326501	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p21	intergenic	rs76326501-C	0.9166	2E-16		0.5265	[0.4-0.65] mmHg increase	Affymetrix [NR] (imputed)	N
914	chr2	43167877	43167878	rs76326501	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p21	AC016735.1	rs76326501-A	0.91	4E-18		0.419	[0.32-0.52] unit increase	Affymetrix [~ 9800000] (imputed)	N
914	chr2	43182753	43182754	rs151256649	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2p21	Intergenic	rs151256649-?	NR	3E-7		16.11	[5.53-46.92]	Illumina [8600000] (imputed)	N
914	chr2	43185531	43185532	rs754868	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2p21	NR	rs754868-A	0.43	1E-8		0.019	[0.013-0.025] z score decrease	Affymetrix [up to 10400000] (imputed)	N
914	chr2	43185531	43185532	rs754868	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2p21	HAAO	rs754868-G	0.41929	7E-10		0.015871	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
914	chr2	43189119	43189120	rs10153926	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p21	NA	rs10153926-A	0.2188	2E-9		0.0143	[0.0096-0.019] unit increase	NR [~ 27400000] (imputed)	N
914	chr2	43194595	43194596	rs72876037	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p21	HAAO, ZFP36L2	rs72876037-T	0.121	2E-14		0.534	[0.4-0.67] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
914	chr2	43194595	43194596	rs72876037	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2p21	HAAO, ZFP36L2	rs72876037-T	0.121	1E-8	(EA, initial)	0.713	[0.47-0.96] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
914	chr2	43196693	43196694	rs115262049	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2p21	AC016735.1	rs115262049-T	0.0864579	7E-9		0.06246276	[0.041-0.084] unit decrease	Affymetrix [7288503] (imputed)	N
914	chr2	43196693	43196694	rs115262049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p21		rs115262049-?	NR	6E-12				NR [~ 8900000] (imputed)	N
914	chr2	43197220	43197221	rs11124906	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	2p21		rs11124906-G	0.164049	7E-6		0.0112703	[0.0064-0.0162] unit decrease	Illumina [13900000] (imputed)	N
914	chr2	43207871	43207872	rs28525376	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p21	THADA	rs28525376-G	0.4216	3E-6		1.03	[1.02-1.04]	Affymetrix, Illumina [~ 27000000] (imputed)	N
914	chr2	43247226	43247227	rs13421358	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	2p21	LOC105374569	rs13421358-C	0.471	3E-7		0.038	[0.024-0.052] unit increase	Illumina [at least 81396]	N
915	chr2	43254292	43254293	rs7593009	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p21	NR	rs7593009-A	0.360138	1E-10		0.020462	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
915	chr2	43255644	43255645	rs76183280	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	2p21	AC016735.2	rs76183280-C	0.0048	4E-8		0.4981176	[0.32-0.68] mg/dl decrease	Illumina [24111857] (imputed)	N
915	chr2	43257544	43257545	rs34141057	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p21		rs34141057-?	NR	5E-8				NR [NR]	N
915	chr2	43257544	43257545	rs34141057	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p21		rs34141057-?	NR	3E-8				NR [NR]	N
915	chr2	43257544	43257545	rs34141057	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p21		rs34141057-?	NR	3E-8				NR [NR]	N
915	chr2	43257544	43257545	rs34141057	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p21		rs34141057-?	NR	4E-8				NR [NR]	N
915	chr2	43257544	43257545	rs34141057	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2p21	NR	rs34141057-T	0.315	4E-6		0.016915865	[0.0097-0.0241] unit decrease	Affymetrix [up to 6544775] (imputed)	N
915	chr2	43271620	43271621	rs2374456	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p21	NR	rs2374456-G	0.584962	1E-9		0.00770514	[0.0051-0.0103] unit increase	Affymetrix [16578495] (imputed)	N
915	chr2	43271620	43271621	rs2374456	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p21	NR	rs2374456-G	0.584175	9E-17		0.0235779	[0.018-0.029] unit increase	Affymetrix [16580851] (imputed)	N
915	chr2	43271620	43271621	rs2374456	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p21	NR	rs2374456-G	0.5838920000000001	7E-10		0.0158069	[0.011-0.021] unit increase	Affymetrix [16585745] (imputed)	N
915	chr2	43277375	43277376	rs11690947	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs11690947-C	0.0993	3E-9	(COL14A1)	0.04833	NR unit increase	Illumina [1671387] (imputed)	N
915	chr2	43291688	43291689	rs12991132	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Diastolic blood pressure	815 African ancestry early adolescents	NA	2p21	ZFP36L2, THADA, LOC1001297261	rs12991132-A	0.59	4E-7		1.87	[-5.2056-8.9456] unit decrease	Illumina [20074711] (imputed)	N
915	chr2	43304438	43304439	rs148578101	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	2p21	NR	rs148578101-?	NR	5E-6		4.568	[NR] z score decrease	Illumina [6737359] (imputed)	N
915	chr2	43313999	43314000	rs45563638	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	2p21		rs45563638-?	NR	2E-6				Illumina [7401356] (imputed)	N
915	chr2	43314286	43314287	rs7574283	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	2p21		rs7574283-?	NR	2E-6				Illumina [7401356] (imputed)	N
915	chr2	43314842	43314843	rs1002796	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	2p21	LOC100506047	rs1002796-T		2E-6		1.79	[1.41-2.29]	Illumina [1909910] (imputed)	N
915	chr2	43315486	43315487	rs62137541	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	2p21	intergenic	rs62137541-T	NR	1E-7		5.28	z score decrease	Illumina [5060354] (imputed)	N
915	chr2	43315847	43315848	rs7578467	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	2p21	intergenic	rs7578467-T	NR	5E-7		5.019	z score increase	Illumina [5060354] (imputed)	N
915	chr2	43317459	43317460	rs58113664	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	2p21		rs58113664-?	NR	6E-8				Illumina [7401356] (imputed)	N
915	chr2	43318707	43318708	rs7562946	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	2p21	intergenic	rs7562946-A	NR	4E-7		5.053	z score decrease	Illumina [5060354] (imputed)	N
915	chr2	43319977	43319978	rs3179891	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	2p21	intergenic	rs3179891-A	NR	5E-7		5.026	z score increase	Illumina [5060354] (imputed)	N
915	chr2	43321127	43321128	rs12615153	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	2p21	intergenic	rs12615153-T	NR	6E-6		4.529	z score decrease	Illumina [5060354] (imputed)	N
915	chr2	43325569	43325570	rs6718520	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	2p21	THADA	rs6718520-A	0.48	3E-8		1.17	[NR]	Affymetrix, Illumina [2529394]	N
915	chr2	43352022	43352024	rs148550456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p21	intergenic	rs148550456-G	0.293652	2E-17		0.021456098	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
915	chr2	43352022	43352024	rs148550456	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2p21	intergenic	rs148550456-G	0.2939	2E-11		0.02722315	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
915	chr2	43354279	43354280	rs17030394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p21		rs17030394-G	0.385154	4E-10		0.014317795	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr2	43355323	43355324	rs12478539	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p21	LOC102723854	rs12478539-G	NR	2E-24		1.1165	NR	Affymetrix, Illumina [8278136] (imputed)	N
915	chr2	43355762	43355763	rs17405635	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	2p21		rs17405635-A	0.26	5E-20		0.0843	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
915	chr2	43355762	43355763	rs17405635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs17405635-A	0.258187	1E-20				Affymetrix, Illumina [23467995] (imputed)	N
915	chr2	43359060	43359061	rs12466022	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2p21	intergenic	rs12466022-C	NR	6E-10		1.11	[1.1-1.13]	Illumina [465434]	N
915	chr2	43359126	43359127	rs12471190	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	2p21	NR	rs12471190-T	0.75	4E-6		0.9	NR	Affymetrix, Illumina [6957974] (imputed)	N
915	chr2	43359274	43359275	rs6705577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p21		rs6705577-C	0.271479	5E-18		0.02156976	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr2	43359274	43359275	rs6705577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p21		rs6705577-C	0.271456	2E-13		0.018369528	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
915	chr2	43359764	43359765	rs560877989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p21		rs560877989-C	NR	6E-12		0.0198	[0.014-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
915	chr2	43360064	43360065	rs28498283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p21		rs28498283-T	0.256442	2E-28		0.028304173	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
915	chr2	43360064	43360065	rs28498283	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p21	intergenic	rs28498283-T	0.2601	6E-16		0.03337007	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
915	chr2	43360064	43360065	rs28498283	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p21	intergenic	rs28498283-T	0.2602	2E-18		0.0363203	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
915	chr2	43361255	43361256	rs2163226	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2p21	Intergenic	rs2163226-A	0.73	2E-16		1.12		Illumina [161311]	N
915	chr2	43371541	43371542	rs1978648	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p21	HAAO, ZFP36L2, THADA	rs1978648-?		5E-7	(SI)	0.2	[0.082-0.318] unit increase	Illumina [693128]	N
915	chr2	43378719	43378720	rs7368883	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	2p21	THADA	rs7368883-A	0.359437	1E-10		0.055433426	[0.039-0.072] unit increase	Affymetrix [7288503] (imputed)	N
915	chr2	43378719	43378720	rs7368883	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2p21	THADA	rs7368883-A	0.36012	1E-9		0.038084783	[0.026-0.05] unit increase	Affymetrix [7288503] (imputed)	N
915	chr2	43381471	43381472	rs13409330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	2p21		rs13409330-G	NR	2E-10		0.0548	[0.038-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
915	chr2	43382740	43382741	rs7604423	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	2p21	NR	rs7604423-C	0.659961723	2E-8		0.2093915	[0.14-0.28] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
916	chr2	43386567	43386568	rs4952668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p21		rs4952668-?	NR	7E-10				NR [~ 8900000] (imputed)	N
916	chr2	43394780	43394781	rs2052926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	2p21		rs2052926-T	NR	3E-9		0.045	[0.03-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
916	chr2	43404819	43404820	rs934229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p21		rs934229-G	NR	3E-10		0.0358	[0.025-0.047] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
916	chr2	43411819	43411820	rs2052923	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p21	intergenic	rs2052923-T	0.7135	3E-7		0.0316	[0.019-0.044] unit decrease	NR [8041861] (imputed)	N
916	chr2	43421460	43421461	rs12614953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p21		rs12614953-C	NR	2E-19		0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
916	chr2	43421460	43421461	rs12614953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	2p21		rs12614953-C	0.769869	5E-11		0.0247509	[0.017-0.032] unit decrease	Illumina [13479135] (imputed)	N
916	chr2	43421460	43421461	rs12614953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p21		rs12614953-C	NR	3E-21		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
916	chr2	43421460	43421461	rs12614953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs12614953-C	0.541132	5E-22				Affymetrix, Illumina [24332387] (imputed)	N
916	chr2	43421460	43421461	rs12614953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs12614953-C	0.538112	2E-24				Affymetrix, Illumina [24558453] (imputed)	N
916	chr2	43421460	43421461	rs12614953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs12614953-?	NR	3E-10				NR [~ 8900000] (imputed)	N
916	chr2	43421460	43421461	rs12614953	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	2p21	LOC102723854, ZFP36L2	rs12614953-?	NR	2E-8		0.03046	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
916	chr2	43423869	43423870	rs4952673	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2p21	ZFP36L2	rs4952673-A	0.47418000000000005	2E-11		0.020476	[0.014-0.026] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
916	chr2	43423894	43423895	rs4952979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p21	NR	rs4952979-T	0.479601	3E-19		0.016983	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
916	chr2	43423894	43423895	rs4952979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs4952979-T	0.549102	8E-23				Affymetrix, Illumina [24653286] (imputed)	N
916	chr2	43423894	43423895	rs4952979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p21	NR	rs4952979-T	0.479526	2E-21		0.017944	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
916	chr2	43423894	43423895	rs4952979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p21	NR	rs4952979-T	0.47967	3E-21		0.017916	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
916	chr2	43423894	43423895	rs4952979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs4952979-?	NR	2E-18				NR [~ 8900000] (imputed)	N
916	chr2	43428650	43428651	rs4952981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2p21		rs4952981-C	0.764795	7E-9		0.0213316	[0.014-0.029] unit decrease	Illumina [13478961] (imputed)	N
916	chr2	43429057	43429058	rs10171620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p21		rs10171620-T	NR	5E-23		0.0169	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
916	chr2	43429057	43429058	rs10171620	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	THADA	rs10171620-T	0.472536	4E-19		0.019810112	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43430439	43430440	rs6708643	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p21	THADA	rs6708643-A	0.5007	4E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
916	chr2	43432961	43432962	rs11124926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	THADA	rs11124926-T	0.483536	3E-20		0.020412806	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43433256	43433257	rs10865189	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p21	ZFP36L2	rs10865189-C	0.5126	2E-14		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
916	chr2	43433256	43433257	rs10865189	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p21	ZFP36L2	rs10865189-C	0.4747	7E-14		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
916	chr2	43433483	43433484	rs10865190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs10865190-T	NR	1E-9		0.0179	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
916	chr2	43433483	43433484	rs10865190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs10865190-T	NR	2E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
916	chr2	43436410	43436411	rs6544633	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	ZFP36L2	rs6544633-A	0.33082	4E-10		0.0122222	[0.0084-0.0161] unit increase	NR [13737936] (imputed)	N
916	chr2	43441168	43441169	rs35136921	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p21	THADA	rs35136921-C	0.4564	3E-11		6.66	NR z score increase	Illumina [26237160] (imputed)	N
916	chr2	43442582	43442583	rs60595656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs60595656-?	NR	1E-9				NR [~ 8900000] (imputed)	N
916	chr2	43446192	43446196	rs72020543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	THADA	rs72020543-T	0.562899	5E-14		0.017154193	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43448478	43448479	rs1430083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2p21		rs1430083-T	NR	9E-10		0.0913	[0.062-0.121] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
916	chr2	43449384	43449385	rs1367173	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2p21	ZFP36L2	rs1367173-T	0.121	2E-14		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
916	chr2	43451956	43451957	rs149290349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p21		rs149290349-A	NR	6E-57		0.0705	[0.062-0.079] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
916	chr2	43451956	43451957	rs149290349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p21		rs149290349-A	NR	2E-33		0.0546	[0.046-0.063] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.07465	8E-9		0.024397148	[0.016-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.074601	3E-20		0.03951182	[0.031-0.048] unit increase	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.074638	3E-31		0.0492934	[0.042-0.057] unit increase	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.074626	5E-36		0.05299903	[0.045-0.061] unit increase	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.07457	4E-14		0.032318335	[0.024-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p21	ZFP36L2	rs149290349-A	0.074576	1E-17		0.036477152	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs149290349-A	0.0714598	2E-86				Affymetrix, Illumina [24588908] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p21	NR	rs149290349-A	0.074356	1E-88		0.070929	[0.064-0.078] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs149290349-A	0.0716216	2E-42				Affymetrix, Illumina [24246363] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p21	NR	rs149290349-A	0.074438	1E-46		0.050441	[0.044-0.057] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs149290349-A	0.0720936	4E-48				Affymetrix, Illumina [20825802] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p21	NR	rs149290349-A	0.074903	1E-51		0.055931	[0.049-0.063] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p21	NR	rs149290349-A	0.074585	3E-77		0.068034	[0.061-0.075] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
916	chr2	43451956	43451957	rs149290349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p21	NR	rs149290349-A	0.074881	1E-12		0.027093	[0.02-0.035] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
916	chr2	43451956	43451957	rs149290349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p21		rs149290349-?	NR	4E-37				NR [~ 8900000] (imputed)	N
916	chr2	43451956	43451957	rs149290349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p21	ZFP36L2	rs149290349-A	0.0759	9E-32		0.08271724	[0.069-0.097] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43451956	43451957	rs149290349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2p21	ZFP36L2	rs149290349-A	0.0761	2E-36		0.08704756	[0.074-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43451956	43451957	rs149290349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2p21	ZFP36L2	rs149290349-A	0.0761	4E-9		0.0405918	[0.027-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43451956	43451957	rs149290349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2p21	ZFP36L2	rs149290349-A	0.0761	9E-39		0.08961224	[0.076-0.103] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43451956	43451957	rs149290349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2p21	ZFP36L2	rs149290349-A	0.0761	2E-25		0.07242298	[0.059-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43453720	43453721	rs112694524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p21		rs112694524-A	NR	1E-23		0.0384	[0.031-0.046] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
916	chr2	43453720	43453721	rs112694524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p21		rs112694524-A	NR	2E-17		0.0398	[0.031-0.049] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
916	chr2	43453720	43453721	rs112694524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p21	THADA, ZFP36L2	rs112694524-A	NR	4E-8		0.0303702	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43453720	43453721	rs112694524	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA, ZFP36L2	rs112694524-A	NR	1E-8		0.0314229	[0.021-0.042] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43453720	43453721	rs112694524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p21	ZFP36L2	rs112694524-A	0.07126	4E-19		0.039638598	[0.031-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43453720	43453721	rs112694524	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2p21	NR	rs112694524-A		1E-10		0.19	[0.13-0.25] unit increase	NR [NR]	N
916	chr2	43453720	43453721	rs112694524	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p21	NR	rs112694524-A	0.071587	3E-11		0.088423	[0.062-0.115] unit decrease	Affymetrix [17914406] (imputed)	N
916	chr2	43458610	43458611	rs13402621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p21	THADA, AC010883.5	rs13402621-C	NR	1E-8		0.0193581	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43458610	43458611	rs13402621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA, AC010883.5	rs13402621-C	NR	6E-9		0.019771	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43458610	43458611	rs13402621	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p21	THADA	rs13402621-C	0.221026	1E-9		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p21		rs113542380-A	0.06	1E-24		10.27	z score increase	Affymetrix [9061022] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p21		rs113542380-A	0.06	1E-19		9.09	z score increase	Affymetrix [9061022] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p21		rs113542380-A	NR	1E-27		0.0495	[0.041-0.058] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p21		rs113542380-A	NR	6E-48		0.0661	[0.057-0.075] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p21	NR	rs113542380-A	0.0748	3E-17				NR [9056863] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p21		rs113542380-G	0.925	5E-40				Affymetrix [10369434] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2p21		rs113542380-G	0.925	3E-39				Affymetrix [10369434] (imputed)	N
916	chr2	43464817	43464818	rs113542380	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2p21		rs113542380-G	0.925	1E-23				Affymetrix [10369434] (imputed)	N
916	chr2	43464817	43464818	rs113542380	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p21	THADA	rs113542380-G	0.925023	2E-11		0.00672001	[0.0048-0.0086] unit decrease	Affymetrix [13995440] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074524	5E-60		0.07094335	[0.062-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074528	7E-68		0.07511958	[0.067-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074699	4E-91		0.08572609	[0.077-0.094] unit increase	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074651	8E-51		0.06442385	[0.056-0.073] unit increase	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074712	2E-94		0.08724153	[0.079-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074697	6E-65		0.07185951	[0.064-0.08] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p21	THADA	rs113542380-A	0.074717	3E-11		0.02805707	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr2	43464817	43464818	rs113542380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs113542380-A	0.0622457	8E-77				Affymetrix, Illumina [23472807] (imputed)	N
916	chr2	43464817	43464818	rs113542380	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p21	THADA	rs113542380-G	0.92	1E-10				Affymetrix, Illumina [8002429] (imputed)	N
916	chr2	43464817	43464818	rs113542380	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p21	THADA	rs113542380-?	NR	1E-10		0.1602	[0.11-0.21] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p21	THADA	rs113542380-G	0.925	9E-11		0.16	[0.11-0.21] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
916	chr2	43464817	43464818	rs113542380	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p21	THADA	rs113542380-G	0.9249	4E-15		0.202	[0.15-0.25] unit decrease	Affymetrix [~ 11900000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p21	THADA	rs113542380-A	0.076	6E-32		0.08249128	[0.069-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2p21	THADA	rs113542380-A	0.0763	2E-11		0.04593845	[0.032-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p21	THADA	rs113542380-A	0.0763	2E-18		0.05927439	[0.046-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p21	THADA	rs113542380-A	0.0763	7E-17		0.05647488	[0.043-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43464817	43464818	rs113542380	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p21	THADA	rs113542380-A	0.0763	6E-9		0.03952053	[0.026-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr2	43469614	43469615	rs80323638	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p21		rs80323638-A	0.08	6E-11		6.54	z score increase	Affymetrix [9061022] (imputed)	N
916	chr2	43469614	43469615	rs80323638	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p21	NR	rs80323638-A	0.0988	3E-11				NR [9056863] (imputed)	N
916	chr2	43469614	43469615	rs80323638	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2p21	MACF1, KIAA0754, BMP8A, PABPC4	rs80323638-?		8E-10				NR [7428630] (imputed)	N
916	chr2	43469614	43469615	rs80323638	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p21	THADA, ZFP36L2, PLEKHH2	rs80323638-?		1E-11				NR [7428630] (imputed)	N
916	chr2	43479637	43479638	rs77533229	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	DHEAS levels	4,301 European ancestry men, 3,358 European ancestry women	NA	2p21	NR	rs77533229-A	0.022	2E-12	(women)	0.425435	[0.31-0.54] unit decrease	Affymetrix [up to 8900000] (imputed)	N
916	chr2	43484555	43484556	rs6749927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p21	THADA	rs6749927-G	NR	1E-9		0.0179038	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43484555	43484556	rs6749927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA	rs6749927-G	NR	2E-9		0.0175505	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
916	chr2	43490618	43490619	rs58839393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2p21	NR	rs58839393-T	NR	9E-10		0.0198	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
916	chr2	43490618	43490619	rs58839393	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p21	THADA	rs58839393-A	0.83734	2E-10		0.0172709	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
916	chr2	43490618	43490619	rs58839393	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p21	NR	rs58839393-A	0.838626	4E-19		0.0157925	[0.012-0.019] unit increase	Affymetrix [16578495] (imputed)	N
916	chr2	43500975	43500976	rs6708167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs6708167-C	0.205001	3E-11				Affymetrix, Illumina [19872809] (imputed)	N
916	chr2	43508204	43508205	rs13030651	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p21	NR	rs13030651-G	0.448832	7E-12		0.0165893	[0.012-0.022] unit increase	Affymetrix [16585745] (imputed)	N
916	chr2	43515426	43515427	rs7575635	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p21	NR	rs7575635-C	0.805662	1E-27		0.037891	[0.031-0.045] unit increase	Affymetrix [16580851] (imputed)	N
917	chr2	43519976	43519977	rs35720761	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p21	THADA	rs35720761-C	0.889	1E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [247470]	N
917	chr2	43519976	43519977	rs35720761	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p21	THADA	rs35720761-C	0.895	8E-16		1.07	[1.05-1.10]	Affymetrix, Illumina [247470]	N
917	chr2	43519976	43519977	rs35720761	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p21	THADA	rs35720761-C	0.889	1E-12		1.08	[1.05-1.10]	Affymetrix, Illumina [247470]	N
917	chr2	43519976	43519977	rs35720761	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p21	THADA	rs35720761-C	0.895	5E-15		1.08	[1.05-1.10]	Affymetrix, Illumina [247470]	N
917	chr2	43529507	43529508	rs10173251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p21		rs10173251-G	NR	6E-14		0.1062	[0.079-0.134] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
917	chr2	43532523	43532524	rs41382648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p21		rs41382648-T	NR	2E-62		0.0559	[0.049-0.062] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
917	chr2	43539347	43539348	rs35043804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p21	THADA	rs35043804-C	0.317672	8E-9		0.014494232	[0.0096-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
917	chr2	43540124	43540125	rs7590268	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 29)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p21		rs7590268-G	0.243055556	1E-8				Illumina [7417619] (imputed)	N
917	chr2	43540124	43540125	rs7590268	30067744	Howe LJ	2018-08-01	PLoS Genet	Investigating the shared genetics of non-syndromic cleft lip/palate and facial morphology.	Nonsyndromic cleft lip with or without cleft palate	638 European ancestry trios, 178 European ancestry duos, 399 cases, 1,318 controls	NA	2p21		rs7590268-?		2E-6				Illumina [NR]	N
917	chr2	43540124	43540125	rs7590268	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2p21	THADA	rs7590268-G	NR	1E-8	(Meta-All, NSCL/P)	1.415	[1.225-1.636]	NR [497084]	N
917	chr2	43540124	43540125	rs7590268	20023658	Mangold E	2009-12-20	Nat Genet	Genome-wide association study identifies two susceptibility loci for nonsyndromic cleft lip with or without cleft palate.	Orofacial clefts	399 European ancestry cases, 1,318 European ancestry controls	655 European ancestry triads	2p21	THADA	rs7590268-G	0.22	9E-8		1.42	[1.26-1.59]	Illumina [521288]	N
917	chr2	43541070	43541071	rs116097055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p21	NR	rs116097055-T	NR	4E-11		0.0611	[0.043-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
917	chr2	43549228	43549229	rs2163227	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA	rs2163227-C	NR	1E-8		0.0176561	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
917	chr2	43553948	43553949	rs1465618	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	2p21	NR	rs1465618-A	NR	6E-9		1.1	NR	Affymetrix [at least 232408] (imputed)	N
917	chr2	43553948	43553949	rs1465618	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	2p21	THADA	rs1465618-T	0.647	1E-6		1.137	NR	Illumina [7742602] (imputed)	N
917	chr2	43553948	43553949	rs1465618	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p21	NR	rs1465618-T	0.21	2E-18		1.09	[1.07-1.11]	Illumina [20370935] (imputed)	N
917	chr2	43553948	43553949	rs1465618	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2p21	THADA	rs1465618-?	0.23	2E-8		1.08	[1.03-1.12]	Illumina [541129]	N
917	chr2	43561133	43561134	rs78635447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs78635447-A	NR	3E-10		0.0364	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
917	chr2	43561133	43561134	rs78635447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p21	NR	rs78635447-A	NR	3E-11		0.0405	[0.029-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
917	chr2	43561133	43561134	rs78635447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs78635447-A	NR	1E-9		0.0352	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
917	chr2	43561133	43561134	rs78635447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs78635447-A	NR	2E-9		0.035	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
917	chr2	43561770	43561771	rs7589428	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	2p21		rs7589428-A	0.51	2E-14		0.061	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
917	chr2	43561779	43561780	rs7563201	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	2p21	THADA	rs7563201-A	0.45	4E-10		0.1081	[0.074-0.142] unit decrease	Illumina [> 10000000] (imputed)	N
917	chr2	43561779	43561780	rs7563201	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	2p21	THADA	rs7563201-G	0.54	3E-10		1.13	[1.09-1.17]	Illumina [~ 9000000] (imputed)	N
917	chr2	43561928	43561929	rs6740322	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p21	THADA	rs6740322-A	0.801	5E-7		0.04	[0.024-0.056] unit decrease	Affymetrix [7947838] (imputed)	N
917	chr2	43567217	43567218	rs13414381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2p21		rs13414381-?	NR	9E-17				NR [~ 8900000] (imputed)	N
917	chr2	43576342	43576343	rs11693769	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p21	ZFP36L2	rs11693769-?	NR	5E-6	(SM 14:0)	0.26680502	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
917	chr2	43586286	43586287	rs6743071	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	2p21	THADA	rs6743071-T	NR	6E-10		1.1863722		Affymetrix, Illumina [~ 13000000] (imputed)	N
917	chr2	43587503	43587504	rs6732426	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p21	THADA	rs6732426-T	NR	3E-8		0.0344078	NR unit increase	NR [NR] (imputed)	N
917	chr2	43587503	43587504	rs6732426	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p21	THADA	rs6732426-T	NR	1E-7				Illumina [~ 1000000] (imputed)	N
917	chr2	43589063	43589064	rs11679731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p21	THADA	rs11679731-T	NR	8E-13		0.0253652	[0.018-0.032] unit increase	Affymetrix [319769] (imputed)	N
917	chr2	43589063	43589064	rs11679731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA	rs11679731-T	NR	2E-13		0.0261198	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
917	chr2	43589063	43589064	rs11679731	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p21	NR	rs11679731-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
917	chr2	43590059	43590060	rs183816209	29868224	Sallah N	2017-11-27	Glob Health Epidemiol Genom	Whole-genome association study of antibody response to Epstein-Barr virus in an African population: a pilot.	Viral capsid antigen IgG seropositivity	1,344 Ugandan ancestry cases, 218 Ugandan ancestry controls	NA	2p21	THADA	rs183816209-?	0.995	5E-9		1.69	[1.30-2.44]	Illumina [~ 17000000] (imputed)	N
917	chr2	43590898	43590899	rs11694173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p21	THADA	rs11694173-A	NR	2E-10		0.0226986	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
917	chr2	43590898	43590899	rs11694173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p21	THADA	rs11694173-A	NR	2E-9		0.0214497	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
917	chr2	43590898	43590899	rs11694173	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p21	NR	rs11694173-A	0.1775	3E-11		0.0144	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
917	chr2	43590898	43590899	rs11694173	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p21	NR	rs11694173-A	0.1772	1E-7		0.0113	[0.0072-0.0154] unit increase	NR [~ 27400000] (imputed)	N
917	chr2	43590898	43590899	rs11694173	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p21	NR	rs11694173-A	NR	2E-6		0.04	NR unit increase	NR [NR] (imputed)	N
917	chr2	43590898	43590899	rs11694173	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2p21	THADA	rs11694173-?	NR	2E-8		1.1737089	[1.11-1.24]	Illumina [13436641] (imputed)	N
917	chr2	43594488	43594489	rs11124930	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p21	NR	rs11124930-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
917	chr2	43597141	43597142	rs76215753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2p21		rs76215753-T	NR	7E-24		0.0418	[0.034-0.05] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
917	chr2	43599251	43599252	rs11124931	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p21	NR	rs11124931-G	0.475087	6E-17		0.0270782	[0.021-0.033] unit decrease	NR [19129689] (imputed)	N
917	chr2	43611882	43611883	rs76675804	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p21	NR	rs76675804-C	0.0941	1E-59		0.1208	[0.11-0.14] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
917	chr2	43616811	43616812	rs6544650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p21		rs6544650-?	NR	2E-14				NR [~ 8900000] (imputed)	N
917	chr2	43619039	43619040	rs10166054	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p21	NR	rs10166054-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
917	chr2	43619039	43619040	rs10166054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p21		rs10166054-?	NR	4E-25				NR [~ 8900000] (imputed)	N
917	chr2	43624251	43624252	rs79165612	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	2p21		rs79165612-A	0.899116	3E-8		0.0377312	[0.024-0.051] unit increase	NR [11722792] (imputed)	N
917	chr2	43630656	43630657	rs7557989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs7557989-?	NR	1E-11				NR [~ 8900000] (imputed)	N
917	chr2	43630656	43630657	rs7557989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs7557989-?	NR	3E-18				NR [~ 8900000] (imputed)	N
917	chr2	43632475	43632476	rs17406451	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	2p21	THADA	rs17406451-?	NR	4E-6	(Males)		[NR]	Illumina [283437]	N
917	chr2	43637997	43637998	rs7591218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p21		rs7591218-G	NR	6E-21		0.1185	[0.094-0.143] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
917	chr2	43637997	43637998	rs7591218	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2p21	NR	rs7591218-A	0.298921486	6E-6		1.0921326	[1.05-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
917	chr2	43637997	43637998	rs7591218	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p21	NR	rs7591218-A	NR	2E-19		1.068	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
917	chr2	43637997	43637998	rs7591218	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p21	NR	rs7591218-A	0.661	4E-9		1.129	[1.08-1.18]	Affymetrix, Illumina [10186136] (imputed)	N
917	chr2	43638837	43638838	rs13429458	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2p21	THADA	rs13429458-?	NR	6E-6	(SF4)			Affymetrix [5476100] (imputed)	N
917	chr2	43638837	43638838	rs13429458	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p21	NR	rs13429458-A	NR	4E-13		1.49	[NR]	Affymetrix [NR] (imputed)	N
917	chr2	43638837	43638838	rs13429458	21151128	Chen ZJ	2010-12-12	Nat Genet	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p21	ZFP36L2, LOC100129726, THADA	rs13429458-A	0.91	2E-23		1.49	[1.39-1.61]	Affymetrix [611633]	N
917	chr2	43644555	43644556	rs10186921	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2p21	THADA	rs10186921-T	0.541554648249665	3E-18		0.0404	[0.031-0.05] SD increase	Illumina [22400000] (imputed)	N
918	chr2	43658422	43658423	rs6544659	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	2p21	THADA	rs6544659-C	NR	6E-7		0.8365	NR	Illumina [up to 1244428] (imputed)	N
918	chr2	43664006	43664007	rs75126888	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p21	NR	rs75126888-T	0.107756	5E-14		0.0391562	[0.029-0.049] unit increase	NR [19129689] (imputed)	N
918	chr2	43665177	43665178	rs7609283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs7609283-?	NR	1E-18				NR [~ 8900000] (imputed)	N
918	chr2	43666736	43666736	rs11429002	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	2p21		rs11429002-GT	0.683621213	3E-12		1.1690398	[1.118744649-1.221596151]	Illumina [8919992] (imputed)	N
918	chr2	43670448	43670449	rs4952990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p21		rs4952990-T	0.68173066	7E-13		0.1614379	[0.12-0.21] unit increase	Illumina [13406905] (imputed)	N
918	chr2	43671175	43671176	rs13414140	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p21	NR	rs13414140-C	0.8858	4E-60		0.1183	[0.1-0.13] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
918	chr2	43672507	43672508	rs77059113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p21		rs77059113-G	NR	5E-15		0.1753	[0.13-0.22] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
918	chr2	43672507	43672508	rs77059113	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p21	NR	rs77059113-G	0.0735555	9E-10		0.0787448	[0.053-0.104] unit decrease	Affymetrix [17914406] (imputed)	N
918	chr2	43672507	43672508	rs77059113	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	2p21	THADA	rs77059113-G	0.0734371	5E-15		0.17530105	[0.13-0.22] unit decrease	Affymetrix [7288503] (imputed)	N
918	chr2	43672507	43672508	rs77059113	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p21	THADA	rs77059113-T	0.9263	4E-13		0.19	[0.14-0.24] unit decrease	Affymetrix [~ 11900000] (imputed)	N
918	chr2	43679174	43679175	rs13423972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p21	THADA	rs13423972-A	0.318053	1E-10		0.015354442	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
918	chr2	43680317	43680318	rs17030818	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	THADA	rs17030818-C	0.891994	1E-16		0.0245601	[0.019-0.03] unit decrease	NR [13737936] (imputed)	N
918	chr2	43682658	43682659	rs12990177	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p21	THADA	rs12990177-A	0.478804	1E-12		0.0150664	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
918	chr2	43682658	43682659	rs12990177	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p21	THADA	rs12990177-A	0.478766	3E-14		0.0159661	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
918	chr2	43687878	43687879	rs17030845	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	2p21	THADA	rs17030845-C	NR	1E-10		3.577	[2.49-4.67] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
918	chr2	43690029	43690030	rs10203174	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2p21	THADA	rs10203174-C	0.893890367325954	1E-11		1.14	[1.10-1.19]	Affymetrix, Illumina [up to 2500000] (imputed)	N
918	chr2	43698027	43698028	rs80147536	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p21	THADA	rs80147536-A	0.9043	3E-29		1.13	[1.11-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
918	chr2	43705285	43705286	rs13405158	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2p21	THADA	rs13405158-T	NR	5E-10	(men)	1.16	[1.11-1.22]	Affymetrix, Illumina [up to 2500000] (imputed)	N
918	chr2	43707384	43707385	rs17334919	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2p21	THADA	rs17334919-T	0.100217908588586	7E-28		0.1398	[0.11-0.16] unit decrease	NR [5035015] (imputed)	N
918	chr2	43712092	43712093	rs6544662	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	2p21	NR	rs6544662-C		3E-8		1.1		NR [8016731] (imputed)	N
918	chr2	43716932	43716933	rs35590893	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p21	THADA	rs35590893-A	0.2738	5E-15		0.2152	[0.16-0.27] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
918	chr2	43721507	43721508	rs12478601	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p21		rs12478601-T	0.5745	4E-13		0.15809277	[0.11-0.2] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
918	chr2	43721507	43721508	rs12478601	21151128	Chen ZJ	2010-12-12	Nat Genet	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p21	ZFP36L2, LOC100129726, THADA	rs12478601-C	0.71	3E-23		1.39	[1.30-1.49]	Affymetrix [611633]	N
918	chr2	43732822	43732823	rs7578597	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p21	THADA	rs7578597-C	0.0905	6E-11		0.099	[0.07-0.128] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr2	43732822	43732823	rs7578597	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p21	THADA	rs7578597-C	0.0905	5E-14	(EA)	0.1377	[0.1-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
918	chr2	43732822	43732823	rs7578597	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	2p21	THADA	rs7578597-T	0.90	1E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [2202892] (imputed)	N
918	chr2	43732957	43732958	rs3764769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p21		rs3764769-?	NR	4E-11				NR [~ 8900000] (imputed)	N
918	chr2	43735712	43735713	rs6761129	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs6761129-?	NR	1E-14		0.0241704	[0.018-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
918	chr2	43735712	43735713	rs6761129	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p21	THADA	rs6761129-C	0.89166	4E-11		0.0355693	[0.025-0.046] unit decrease	NR [17166351] (imputed)	N
918	chr2	43735712	43735713	rs6761129	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p21	THADA	rs6761129-C	0.891321	5E-7	(women)	0.0382273	[0.024-0.053] unit decrease	NR [17166351] (imputed)	N
918	chr2	43738172	43738173	rs1038822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p21	THADA	rs1038822-T	0.298764	2E-12		0.017099205	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr2	43738172	43738173	rs1038822	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2p21		rs1038822-T	NR	9E-10		1.1003	NR	Affymetrix [7846216] (imputed)	N
918	chr2	43738172	43738173	rs1038822	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2p21		rs1038822-T	NR	6E-8		1.09	[1.056-1.124]	Affymetrix [7846216] (imputed)	N
918	chr2	43747840	43747841	rs190251311	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	2p21	NR	rs190251311-G		6E-6		0.271	[0.13-0.41] SD units decrease	NR [10700000] (imputed)	N
918	chr2	43747853	43747854	rs202032561	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p21	THADA	rs202032561-T	0.1315	1E-10		0.0331	[0.023-0.043] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
918	chr2	43752381	43752382	rs6708660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p21		rs6708660-C	NR	2E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
918	chr2	43752381	43752382	rs6708660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p21		rs6708660-C	NR	5E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
918	chr2	43752381	43752382	rs6708660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p21		rs6708660-C	NR	5E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
918	chr2	43752381	43752382	rs6708660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p21		rs6708660-?	NR	9E-15				NR [~ 8900000] (imputed)	N
918	chr2	43754654	43754655	rs6752964	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p21	NR	rs6752964-C	0.1	4E-12		0.02	[0.014-0.026] unit increase	Affymetrix [2446094] (imputed)	N
918	chr2	43754654	43754655	rs6752964	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p21	NR	rs6752964-C	0.1	5E-8				Affymetrix [2446094] (imputed)	N
918	chr2	43756031	43756032	rs7591387	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p21	NA	rs7591387-T	0.1024	9E-11		0.0179	[0.012-0.023] unit increase	NR [~ 27400000] (imputed)	N
918	chr2	43757292	43757293	rs77881454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p21	THADA	rs77881454-T	NR	3E-9		0.0266455	[0.018-0.035] unit increase	Affymetrix [319769] (imputed)	N
918	chr2	43757292	43757293	rs77881454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p21	THADA	rs77881454-T	NR	5E-10		0.0279291	[0.019-0.037] unit increase	Affymetrix [319769] (imputed)	N
918	chr2	43757292	43757293	rs77881454	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p21	NR	rs77881454-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
918	chr2	43757292	43757293	rs77881454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p21		rs77881454-?	NR	4E-11				NR [~ 8900000] (imputed)	N
918	chr2	43762111	43762112	rs77972916	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p21		rs77972916-A	NR	6E-10		0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
918	chr2	43762111	43762112	rs77972916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p21	THADA	rs77972916-A	0.075883	1E-26		0.044743594	[0.037-0.053] unit increase	Affymetrix [93095623] (imputed)	N
918	chr2	43762111	43762112	rs77972916	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p21	THADA	rs77972916-A	0.075913	7E-14		0.03119784	[0.023-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
918	chr2	43762111	43762112	rs77972916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p21		rs77972916-?	NR	1E-21				NR [~ 8900000] (imputed)	N
918	chr2	43762111	43762112	rs77972916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p21		rs77972916-?	NR	7E-12				NR [~ 8900000] (imputed)	N
918	chr2	43762111	43762112	rs77972916	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p21	THADA	rs77972916-A	0.0758	1E-10		0.04378274	[0.03-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr2	43762194	43762195	rs67584485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p21		rs67584485-G	NR	6E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
918	chr2	43762194	43762195	rs67584485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p21		rs67584485-?	NR	2E-10				NR [~ 8900000] (imputed)	N
918	chr2	43777963	43777964	rs77981966	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p21	NR	rs77981966-T	0.0762843	4E-9		0.0741267	[0.049-0.099] unit decrease	Affymetrix [17914406] (imputed)	N
918	chr2	43777963	43777964	rs77981966	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p21	THADA	rs77981966-?	NR	2E-16	(subset analysis)			Illumina [130052]	N
919	chr2	43786817	43786818	rs77552263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs77552263-A	0.0657888	1E-38				Affymetrix, Illumina [23114412] (imputed)	N
919	chr2	43786817	43786818	rs77552263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p21	NR	rs77552263-A	0.077954	7E-42		0.048554	[0.042-0.056] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
919	chr2	43788091	43788092	rs2888875	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2p21	THADA	rs2888875-A	0.69	7E-7	(EA)	0.0041	[0.0025-0.0057] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
919	chr2	43797709	43797710	rs11904510	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2p21	THADA	rs11904510-?		8E-17				Illumina [5041948] (imputed)	N
919	chr2	43803467	43803468	rs17031076	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p21	NR	rs17031076-?	NR	2E-6				Affymetrix [NR]	N
919	chr2	43806171	43806172	rs35319517	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2p21	NR	rs35319517-C	0.804791	5E-9		0.0144524	[0.0095-0.0194] unit increase	Affymetrix [16583148] (imputed)	N
919	chr2	43806381	43806382	rs11888640	30254083	Cousminer DL	2018-09-25	Diabetes Care	First Genome-Wide Association Study of Latent Autoimmune Diabetes in Adults Reveals Novel Insights Linking Immune and Metabolic Diabetes.	Latent autoimmune diabetes	2,634 European ancestry cases, 5,947 European ancestry controls	345 European ancestry cases, 1,664 European ancestry controls	2p21	THADA	rs11888640-?	0.481522	2E-6		1.1833298	[1.1-1.27]	Affymetrix, Illumina [7868002] (imputed)	N
919	chr2	43806917	43806918	rs10495903	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2p21	ZFP36L2, THADA	rs10495903-?		6E-9				Illumina [9725440] (imputed)	N
919	chr2	43806917	43806918	rs10495903	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2p21	THADA, ZFP36L2	rs10495903-?		4E-11				Illumina [9560910] (imputed)	N
919	chr2	43806917	43806918	rs10495903	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p21	NR	rs10495903-A	0.1316	3E-13	(EA)	1.1337671	[1.1-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
919	chr2	43806917	43806918	rs10495903	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p21	intergenic	rs10495903-T	0.13	8E-12		1.086	[1.041-1.131]	Affymetrix, Illumina [1230000] (imputed)	N
919	chr2	43806917	43806918	rs10495903	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2p21	THADA	rs10495903-T	0.129	2E-14		1.14	[1.09-1.20]	Affymetrix, Illumina [953241] (imputed)	N
919	chr2	43809346	43809347	rs78487399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2p21	THADA	rs78487399-C	0.0975	5E-11		0.03988202	[0.028-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr2	43809346	43809347	rs78487399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2p21	THADA	rs78487399-C	0.0975	2E-11		0.04064826	[0.029-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr2	43809346	43809347	rs78487399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2p21	THADA	rs78487399-C	0.0975	3E-10		0.03823174	[0.026-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr2	43809346	43809347	rs78487399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2p21	THADA	rs78487399-C	0.0975	3E-11		0.04032608	[0.028-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
919	chr2	43809346	43809347	rs78487399	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p21	NR	rs78487399-?	NR	8E-16	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
919	chr2	43817504	43817505	rs11897432	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	2p21	THADA	rs11897432-A	0.22	8E-7	(H19-ICR)			Illumina [515966]	N
919	chr2	43827057	43827058	rs6760391	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	2p21	THADA	rs6760391-C	0.15274	3E-7		0.00529397	[0.0033-0.0073] unit decrease	Affymetrix [9463307] (imputed)	N
919	chr2	43848663	43848664	rs11904361	25337690	Redler S	2015-03-01	J Invest Dermatol	Immunochip-based analysis: high-density genotyping of immune-related loci sheds further light on the autoimmune genetic architecture of alopecia areata.	Alopecia areata	767 European ancestry cases, 1,475 European ancestry controls	1,016 European ancestry cases, 1,060 European ancestry controls	2p21	THADA	rs11904361-?	NR	6E-6		1.39	[1.27-1.54]	Illumina [146703]	N
919	chr2	43851281	43851282	rs28514770	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p21	NR	rs28514770-C	NR	3E-9		1.047	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
919	chr2	43855149	43855150	rs78070307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p21	NR	rs78070307-C	NR	2E-40		0.0572	[0.049-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr2	43855149	43855150	rs78070307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs78070307-C	NR	1E-12		0.0299	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr2	43855149	43855150	rs78070307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs78070307-C	NR	4E-13		0.0306	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
919	chr2	43855149	43855150	rs78070307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2p21	NR	rs78070307-C	NR	1E-17		0.0377	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr2	43860613	43860614	rs34848455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p21		rs34848455-G	NR	8E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
919	chr2	43860613	43860614	rs34848455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p21	NR	rs34848455-G	NR	7E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
919	chr2	43863453	43863454	rs113296370	27670767	Chang SW	2016-09-27	Pharmacogenomics J	Genome-wide association study identifies pharmacogenomic loci linked with specific antihypertensive drug treatment and new-onset diabetes.	Diabetes in response to antihypertensive drug treatment (treatment strategy interaction)	138 European American hypertensive cases with diabetes, 414 European American hypertensive cases without diabetes	157 Hispanic hypertensive cases with diabetes, 314 Hispanic hypertensive cases without diabetes, 39 African American hypertensive cases with diabetes, 78 African American hypertensive cases without diabetes	2p21	THADA, PLEKHH2	rs113296370-C	0.19	2E-7	(European)	8.83	[8.01-9.65]	Illumina [NR] (imputed)	N
919	chr2	43877155	43877156	rs11124945	27670767	Chang SW	2016-09-27	Pharmacogenomics J	Genome-wide association study identifies pharmacogenomic loci linked with specific antihypertensive drug treatment and new-onset diabetes.	Diabetes in response to antihypertensive drug treatment (treatment strategy interaction)	138 European American hypertensive cases with diabetes, 414 European American hypertensive cases without diabetes	157 Hispanic hypertensive cases with diabetes, 314 Hispanic hypertensive cases without diabetes, 39 African American hypertensive cases with diabetes, 78 African American hypertensive cases without diabetes	2p21	PLEKHH2, THADA	rs11124945-G	0.19	5E-8		7.61	[3.39-17.09] (European)	Illumina [NR] (imputed)	N
920	chr2	43927373	43927374	rs115528845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p21	NR	rs115528845-G	NR	9E-10		0.0561	[0.038-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	43980630	43980631	rs17336182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs17336182-C	NR	1E-13		0.034	[0.025-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	43980630	43980631	rs17336182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs17336182-C	NR	1E-18		0.0405	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	43980630	43980631	rs17336182	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs17336182-C	NR	9E-17		0.0382	[0.029-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	43998725	43998726	rs10495907	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p21	DYNC2LI1, PLEKHH2	rs10495907-A	0.1462	2E-7		0.041	[0.026-0.056] unit increase	NR [8041861] (imputed)	N
920	chr2	44001138	44001139	rs17031488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs17031488-T	NR	5E-16		0.0261	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
920	chr2	44001138	44001139	rs17031488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs17031488-T	NR	1E-17		0.0275	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
920	chr2	44001138	44001139	rs17031488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs17031488-T	NR	2E-13		0.0238	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
920	chr2	44004859	44004860	rs3792026	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs3792026-A	0.0818367	2E-15				Affymetrix, Illumina [24558453] (imputed)	N
920	chr2	44012399	44012400	rs10206087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs10206087-C	0.0828466	8E-15				Affymetrix, Illumina [24653286] (imputed)	N
920	chr2	44014300	44014301	rs3765000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	DYNC2LI1	rs3765000-G	0.0737139999999999	1E-10		0.027137235	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
920	chr2	44014300	44014301	rs3765000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	DYNC2LI1	rs3765000-G	0.073705	7E-12		0.028983735	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
920	chr2	44014300	44014301	rs3765000	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p21	NR	rs3765000-G	0.074396	1E-15		0.028027	[0.021-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
920	chr2	44014300	44014301	rs3765000	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs3765000-?	NR	6E-12				NR [~ 8900000] (imputed)	N
920	chr2	44016550	44016551	rs2288706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	DYNC2LI1	rs2288706-G	0.071045	2E-12		0.030269116	[0.022-0.039] unit increase	Affymetrix [93095623] (imputed)	N
920	chr2	44017748	44017749	rs3792016	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p21	NR	rs3792016-T	0.074179	7E-16		0.028374	[0.021-0.035] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
920	chr2	44037395	44037396	rs116520905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p21	NR	rs116520905-G	NR	5E-14		0.0404	[0.03-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	44037395	44037396	rs116520905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs116520905-G	NR	7E-10		0.0323	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
920	chr2	44037395	44037396	rs116520905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p21	NR	rs116520905-G	NR	2E-9		0.0317	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44040340	44040341	rs150401285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs150401285-G	NR	2E-11		0.2516	[0.18-0.32] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44040340	44040341	rs150401285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs150401285-G	NR	3E-11		0.2499	[0.18-0.32] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44042786	44042787	rs138958276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs138958276-?	NR	4E-11				NR [~ 8900000] (imputed)	N
921	chr2	44042903	44042904	rs4148191	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	2p21	ABCG5	rs4148191-A	NR	4E-9				NR [2501549] (imputed)	N
921	chr2	44049119	44049120	rs4245786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs4245786-A	NR	3E-11		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44049119	44049120	rs4245786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs4245786-A	NR	1E-14		0.0213	[0.016-0.027] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44049119	44049120	rs4245786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs4245786-A	NR	3E-13		0.0202	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44055162	44055163	rs141828689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs141828689-T	NR	3E-10		0.2021	[0.14-0.27] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44055162	44055163	rs141828689	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs141828689-T	NR	3E-11		0.2134	[0.15-0.28] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p21		rs114938914-C	0.938707	1E-11		0.0570778	[0.041-0.074] unit decrease	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	6E-16		0.0660292	[0.05-0.082] unit decrease	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p21		rs114938914-C	0.938591	6E-13		0.0619649	[0.045-0.079] unit decrease	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	2E-8		0.0436827	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	6E-17		0.0686434	[0.053-0.085] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	1E-18		0.0724725	[0.056-0.089] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	3E-21		0.0762858	[0.061-0.092] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	4E-13		0.0586474	[0.043-0.074] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	8E-11		0.050668	[0.035-0.066] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	2E-18		0.074683	[0.058-0.091] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	3E-12		0.0564186	[0.041-0.072] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p21		rs114938914-C	0.938591	1E-12		0.0587823	[0.043-0.075] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	1E-8		0.0444043	[0.029-0.06] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	5E-14		0.0612857	[0.045-0.077] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p21		rs114938914-C	0.938591	5E-14		0.0636387	[0.047-0.08] unit increase	NR [11722792] (imputed)	N
921	chr2	44055509	44055510	rs114938914	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2p21		rs114938914-C	0.938588	7E-10		0.048091	[0.033-0.063] unit increase	NR [11722792] (imputed)	N
921	chr2	44058200	44058201	rs77725792	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2p21		rs77725792-G	0.93858	8E-10		0.0526926	[0.036-0.069] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs115445558-G	0.93411	8E-19		0.0721747	[0.056-0.088] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	2p21		rs115445558-G	0.934106	4E-15		0.0611077	[0.046-0.076] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs115445558-G	0.93411	4E-18		0.0708751	[0.055-0.087] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs115445558-G	0.93411	1E-20		0.0759417	[0.06-0.092] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p21		rs115445558-G	0.93411	6E-20		0.0747435	[0.059-0.091] unit increase	NR [11722792] (imputed)	N
921	chr2	44063097	44063098	rs115445558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p21		rs115445558-C	NR	5E-16		0.0359	[0.027-0.045] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
921	chr2	44065089	44065090	rs6756629	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs6756629-?	NR	3E-6		3.079391	[1.79-4.37] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44065089	44065090	rs6756629	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs6756629-?	NR	2E-6		2.773495	[1.63-3.91] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44065089	44065090	rs6756629	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2p21	ABCG5	rs6756629-A	0.08	1E-14	(Total cholesterol in LDL)	0.14	[0.1-0.18] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
921	chr2	44065089	44065090	rs6756629	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	LDL cholesterol	17,083 European ancestry individuals, 714 Orcadian individuals	NA	2p21	ABCG5	rs6756629-G	0.92	3E-10		0.16	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
921	chr2	44065089	44065090	rs6756629	19060911	Aulchenko YS	2008-12-07	Nat Genet	Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.	Cholesterol, total	21,848 European ancestry individuals, 714 Orcadian individuals	NA	2p21	ABCG5	rs6756629-G	0.92	2E-11		0.15	[NR] s.d. increase	Affymetrix, Illumina [up to 600000]	N
921	chr2	44066246	44066247	rs11887534	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p21		rs11887534-C	0.006745351	8E-15		0.77229506	[0.58-0.97] unit increase	Illumina [13429768] (imputed)	N
921	chr2	44066246	44066247	rs11887534	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2p21	ABCG8	rs11887534-C	0.066	5E-11		6.57	z-score increase	Affymetrix [4312306] (imputed)	N
921	chr2	44066246	44066247	rs11887534	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p21	ABCG8	rs11887534-?	NR	1E-28		3.643	[2.91-4.38] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
921	chr2	44066246	44066247	rs11887534	30692554	Bustos BI	2019-01-28	Sci Rep	Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry.	Gallstone disease	529 Chilean Latino cases, 566 Chilean Latino controls	626 Chilean Latino cases, 1,017 Chilean Latino controls, 1,909 European ancestry cases, 4,183 European ancestry controls	2p21	ABCG8	rs11887534-C	0.14	3E-8	(Chilean Latinos)	1.74	[1.45-2.02]	Affymetrix [9433911] (imputed)	N
921	chr2	44066246	44066247	rs11887534	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	2p21	ABCG8	rs11887534-?		1E-353		1.94	[1.88-2.08]	Affymetrix, Illumina [43000000] (imputed)	N
921	chr2	44066246	44066247	rs11887534	30325047	Gellert-Kristensen H	2018-10-16	Hepatology	Identification and replication of six new loci associated with gallstone disease.	Gallstone disease	14,940 British ancestry cases, 322,268 British ancestry controls	1,522 Danish ancestry cases, 18,266 Danish ancestry controls	2p21	ABCG8	rs11887534-C	0.070	9E-6		2.01	[1.94-2.08]	Affymetrix [784257]	N
921	chr2	44066246	44066247	rs11887534	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	2p21	ABCG8	rs11887534-C	NR	9E-33				NR [2501749] (imputed)	N
921	chr2	44066246	44066247	rs11887534	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	2p21	ABCG8, D19H	rs11887534-C	0.07	2E-75	(EA)	1.78	[1.70-1.86]	Affymetrix, Illumina [at least 2305318] (imputed)	N
921	chr2	44066246	44066247	rs11887534	17632509	Buch S	2007-07-15	Nat Genet	A genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease.	Gallstone disease	280 European ancestry cases, 360 European ancestry controls	1,833 European ancestry cases, 1,035 European ancestry controls, 167 Hispanic cases, 167 Hispanic controls	2p21	ABCG8	rs11887534-C	0.10	1E-14		2.2	[1.80-2.60]	Affymetrix [382492]	N
921	chr2	44068340	44068341	rs66900043	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs66900043-?	NR	5E-13		5.918476	[4.31-7.53] unit increase	Illumina [32003504] (imputed)	N
921	chr2	44068340	44068341	rs66900043	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs66900043-?	NR	3E-13		5.412054	[3.96-6.86] unit increase	Illumina [31808917] (imputed)	N
921	chr2	44069771	44069772	rs75331444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p21		rs75331444-A	NR	9E-96		0.0978	[0.089-0.107] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
921	chr2	44069771	44069772	rs75331444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p21		rs75331444-A	NR	7E-386		0.8073	[0.77-0.84] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
921	chr2	44069771	44069772	rs75331444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2p21		rs75331444-A	NR	4E-110		0.6995	[0.64-0.76] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
921	chr2	44069771	44069772	rs75331444	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2p21	ABCG8	rs75331444-G	0.93438	3E-21		0.00739659	[0.0059-0.0089] unit decrease	Affymetrix [13995440] (imputed)	N
921	chr2	44069771	44069772	rs75331444	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2p21	ABCG8	rs75331444-G	0.95	2E-8		1.11	[1.08-1.13]	Illumina [5167567] (imputed)	N
921	chr2	44069771	44069772	rs75331444	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Cholesterol, total	19,259 British ancestry individuals from 6863 families.	NA	2p21	ABCG8	rs75331444-A	0.072	2E-11		0.14149597	[0.1-0.18] mg/dl decrease	Illumina [24111857] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	8E-20		0.0401752	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-19		0.0373235	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-19		0.038718	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-11		0.0278918	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-10		0.0275637	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-24		0.045335	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-15		0.0348392	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-21		0.0418288	[0.033-0.051] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-16		0.0358051	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-26		0.046564	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-9		0.0251548	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-25		0.0457994	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-27		0.0462788	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-25		0.0448179	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2p21		rs4299376-G	0.323718	5E-8		0.0237985	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-22		0.0418817	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-27		0.0476905	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-23		0.0429608	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	7E-27		0.047141	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	2p21		rs4299376-G	0.323718	9E-11		0.0276487	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	2p21		rs4299376-G	0.323718	2E-13		0.0316651	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p21		rs4299376-G	0.324027	3E-19		0.039678	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-16		0.0348525	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-18		0.0377742	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-25		0.0457539	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-21		0.0414444	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-22		0.0429116	[0.034-0.052] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-26		0.0466147	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-12		0.0302633	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-25		0.0462115	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-29		0.0476488	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2p21		rs4299376-G	0.323718	1E-16		0.0356946	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	2p21		rs4299376-G	0.323718	2E-19		0.0390728	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-26		0.0466498	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-16		0.036382	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-16		0.0347346	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-23		0.0433896	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-26		0.0463295	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	5E-24		0.0446814	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-25		0.0457193	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-29		0.0487562	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-15		0.0345972	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-28		0.0481814	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-27		0.0466363	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-10		0.0268351	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-26		0.0469336	[0.038-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-20		0.040273	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	7E-23		0.0436634	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-27		0.0477813	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	7E-15		0.034127	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-27		0.0477936	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-28		0.0485611	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	5E-28		0.048241	[0.04-0.057] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	8E-27		0.045704	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-12		0.0302912	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-17		0.037727	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-23		0.0442725	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-30		0.0502072	[0.042-0.059] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-19		0.040189	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	5E-13		0.0315591	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-26		0.0464288	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	7E-23		0.0434949	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	6E-25		0.0455133	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-27		0.0463446	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-20		0.0393957	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-9		0.0246626	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	4E-25		0.0443283	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-9		0.0260157	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-20		0.0401468	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-25		0.0460883	[0.037-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-28		0.0489755	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	9E-22		0.0424818	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	1E-9		0.0263736	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	3E-27		0.0473361	[0.039-0.056] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	8E-28		0.0467087	[0.038-0.055] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	2p21		rs4299376-G	0.323723	2E-27		0.0478895	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p21		rs4299376-T	NR	5E-89		0.0495	[0.045-0.054] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	2p21		rs4299376-T	NR	7E-9		0.0417	[0.028-0.056] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p21		rs4299376-T	NR	7E-48		0.0868	[0.075-0.099] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p21		rs4299376-T	NR	1E-12		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2p21	ABCG8	rs4299376-?	NR	1E-10		0.0016	[0.001-0.0022] unit decrease	Affymetrix [21347608] (imputed)	N
921	chr2	44072575	44072576	rs4299376	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2p21	ABCG8	rs4299376-?	NR	3E-10		0.0027	[0.0017-0.0037] unit decrease	Affymetrix [21347608] (imputed)	N
921	chr2	44072575	44072576	rs4299376	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p21	ABCG8	rs4299376-?		3E-41		0.0952	[0.081-0.109] unit increase	Illumina [31500000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p21	ABCG8	rs4299376-?		3E-44		0.0978	[0.084-0.112] unit increase	Illumina [31500000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p21	ABCG8	rs4299376-T	0.676983	5E-16		0.019406531	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs4299376-G	0.316704	1E-17				Affymetrix, Illumina [17210439] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p21	NR	rs4299376-G	0.322558	3E-20		0.018836	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p21	ABCG8	rs4299376-G	0.323183	4E-131		0.0542425	[0.05-0.059] unit increase	Affymetrix [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p21	ABCG8	rs4299376-G	0.32319	1E-104		0.0481043	[0.044-0.052] unit increase	Affymetrix [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p21	ABCG8	rs4299376-?	NR	5E-187		0.0789	[0.074-0.084] unit increase	Affymetrix [5701386] (imputed)	N
921	chr2	44072575	44072576	rs4299376	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs4299376-?	NR	3E-14		3.476715	[2.58-4.37] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44072575	44072576	rs4299376	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs4299376-?	NR	9E-16		3.282287	[2.48-4.08] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44072575	44072576	rs4299376	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls	NA	2p21	ABCG8	rs4299376-G	0.323265	7E-9		0.04162751	[0.028-0.056] unit increase	Affymetrix [7288503] (imputed)	N
921	chr2	44072575	44072576	rs4299376	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p21	ABCG8	rs4299376-G	0.324311	9E-48		0.08669046	[0.075-0.098] unit increase	Affymetrix [7288503] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	2p21		rs4299376-T	0.7131	6E-28		2.0194	[1.66-2.38] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p21	ABCG8	rs4299376-T	NR	6E-86				Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p21	ABCG8	rs4299376-T	NR	4E-74	(EA)			Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p21	ABCG8	rs4299376-T	NR	1E-9	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p21	ABCG8	rs4299376-T	NR	8E-76	(EA)			Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p21	ABCG8	rs4299376-T	NR	3E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p21	ABCG8	rs4299376-T	NR	2E-89				Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p21	ABCG8	rs4299376-T	NR	2E-10	(H)			Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	4E-39	(EA)	2.556	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	3E-50		2.637	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	1E-9	(Hispanic)	3.575	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	5E-31		2.636	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	3E-19	(EA)	2.367	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p21	ABCG8	rs4299376-T	NR	1E-9	(Hispanic)	4.322	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2p21	NR	rs4299376-T	0.7278	4E-57				Affymetrix, Illumina [at least 2500000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p21		rs4299376-?	NR	2E-19				NR [~ 8900000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4299376-G	NR	3E-44		0.065	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44072575	44072576	rs4299376	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4299376-G	0.319	2E-39	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44072575	44072576	rs4299376	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4299376-G	NR	9E-54		0.073	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44072575	44072576	rs4299376	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4299376-G	0.319	2E-49	(EA)	0.074	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44072575	44072576	rs4299376	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p21	ABCG5, ABCG8	rs4299376-T	0.684	5E-17		0.057	[0.043-0.071] unit decrease	Affymetrix [7947838] (imputed)	N
921	chr2	44072575	44072576	rs4299376	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2p21	ABCG5, ABCG8	rs4299376-G	0.319	6E-10		1.06	[1.04-1.08]	Affymetrix [9149595] (imputed)	N
921	chr2	44072575	44072576	rs4299376	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p21	ABCG5, ABCG58	rs4299376-G	0.31	4E-72		0.081	[NR] unit increase	NR [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2p21	ABCG8, ABCG5	rs4299376-G	0.31	3E-73		0.079	[NR] unit increase	NR [NR] (imputed)	N
921	chr2	44072575	44072576	rs4299376	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	2p21	ABCG8, ABCG5	rs4299376-G	0.3	2E-47		2.75	[2.36-3.14] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2p21	ABCG8, ABCG5	rs4299376-G	0.3	4E-45		3.01	[2.58-3.44] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
921	chr2	44072575	44072576	rs4299376	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	2p21	ABCG8, ABCG5	rs4299376-?	NR	2E-8	(LDL-C.assay, fasting)	2.595	[NR] unit increase	Illumina [335603]	N
921	chr2	44073655	44073656	rs41360247	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	2p21		rs41360247-C	0.07	2E-9		3.63	[2.43-4.83] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
921	chr2	44073655	44073656	rs41360247	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		2p21		rs41360247-C	0.07	1E-10		3.56	[2.48-4.64] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
921	chr2	44073655	44073656	rs41360247	20529992	Teupser D	2010-06-07	Circ Cardiovasc Genet	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	2p21	ABCG8	rs41360247-C	0.064	6E-25	(campesterol)	14.0	[NR] % decrease	Affymetrix [374370]	N
921	chr2	44073880	44073881	rs6544713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2p21		rs6544713-T	0.323734	6E-23		0.042889	[0.034-0.051] unit increase	NR [11722792] (imputed)	N
921	chr2	44073880	44073881	rs6544713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2p21		rs6544713-T	0.323734	2E-21		0.0403771	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
921	chr2	44073880	44073881	rs6544713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p21		rs6544713-T	0.323734	1E-21		0.040703	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
921	chr2	44073880	44073881	rs6544713	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2p21		rs6544713-T	0.32405	1E-10		0.0274781	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
921	chr2	44073880	44073881	rs6544713	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	2p21		rs6544713-C	0.32	2E-12		0.91		Affymetrix [15679186] (imputed)	N
921	chr2	44073880	44073881	rs6544713	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs6544713-?	NR	1E-12		3.25371	[2.36-4.15] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44073880	44073881	rs6544713	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs6544713-?	NR	2E-14		3.121776	[2.32-3.92] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44073880	44073881	rs6544713	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	2p21		rs6544713-T	0.2865	3E-24		1.9301	[1.56-2.3] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
921	chr2	44073880	44073881	rs6544713	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2p21	ABCG5, ABCG8	rs6544713-T	0.3038	2E-18		0.0492	[0.038-0.06] unit increase	Affymetrix [at least 7947838] (imputed)	N
921	chr2	44073880	44073881	rs6544713	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p21	ABCG5, ABCG8	rs6544713-T	0.3018	6E-19		0.0549	[0.043-0.067] unit increase	NR [8041861] (imputed)	N
921	chr2	44073880	44073881	rs6544713	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	2p21	ABCG8	rs6544713-T	0.32	2E-20		0.15	[0.11-0.19] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
921	chr2	44073999	44074000	rs4953023	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p21	ABCG8	rs4953023-?	NR	4E-24		3.466	[2.76-4.18] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
921	chr2	44073999	44074000	rs4953023	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs4953023-?	NR	1E-6		3.129607	[1.86-4.4] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44073999	44074000	rs4953023	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs4953023-?	NR	5E-7		2.892879	[1.77-4.02] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44073999	44074000	rs4953023	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4953023-G	NR	3E-29		0.094	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44073999	44074000	rs4953023	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4953023-G	0.932	3E-27	(EA)	0.099	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44073999	44074000	rs4953023	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4953023-G	NR	3E-32		0.101	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44073999	44074000	rs4953023	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs4953023-G	0.932	1E-29	(EA)	0.106	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	2E-14		0.0331535	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	7E-16		0.0345689	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	5E-15		0.0331498	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	2E-16		0.0340907	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	9E-18		0.0357063	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	3E-13		0.0322658	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	1E-10		0.0285821	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2p21		rs4245791-C	0.325472	1E-17		0.036551	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
921	chr2	44074430	44074431	rs4245791	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2p21	ABCG8	rs4245791-?	NR	8E-34		2.453	[2.04-2.86] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
921	chr2	44074430	44074431	rs4245791	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	Low density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	2p21	NR	rs4245791-?	NR	5E-8		0.093	[0.06-0.126] unit decrease	Illumina [1770809] (imputed)	N
921	chr2	44074430	44074431	rs4245791	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs4245791-?	NR	2E-14		3.604997	[2.68-4.53] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44074430	44074431	rs4245791	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs4245791-?	NR	8E-17		3.495864	[2.67-4.32] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44074430	44074431	rs4245791	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p21	ABCG8	rs4245791-T	0.7073	1E-72		0.053	[0.047-0.059] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
921	chr2	44074430	44074431	rs4245791	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p21	ABCG8	rs4245791-T	0.7072	6E-94		0.0604	[0.055-0.066] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
921	chr2	44074430	44074431	rs4245791	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	2p21	ABCG8	rs4245791-T	0.69	5E-31	(EA)	1.28	[1.25-1.32]	Affymetrix, Illumina [at least 2305318] (imputed)	N
921	chr2	44074430	44074431	rs4245791	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	LDL cholesterol	7,861 African American individuals, 3,425 Hispanic individuals	7,138 African American individuals	2p21	ABCG8	rs4245791-G	0.143	1E-9	(AA)	5.97	[NR] unit increase	Affymetrix [NR]	N
921	chr2	44074430	44074431	rs4245791	20529992	Teupser D	2010-06-07	Circ Cardiovasc Genet	Genetic regulation of serum phytosterol levels and risk of coronary artery disease.	Phytosterol levels	1,495 European ancestry individuals	2,917 European ancestry individuals	2p21	ABCG8	rs4245791-C	0.322	2E-50	(campesterol)	12.0	[NR] % increase	Affymetrix [374370]	N
921	chr2	44075482	44075483	rs76866386	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Acute pancreatitis	3,798 European ancestry cases, 476,104 European ancestry controls, 827 East Asian ancestry cases, 177,471 East Asian ancestry controls	NA	2p21		rs76866386-C	NR	2E-16		0.3759	[0.29-0.47] unit increase	Affymetrix, Illumina [25843473] (imputed)	N
921	chr2	44075482	44075483	rs76866386	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	2p21	ABCG5/8	rs76866386-C	NR	4E-10	(CE(20:2;0))	0.3923	[0.27-0.52] unit decrease	Illumina [~ 9300000] (imputed)	N
921	chr2	44075482	44075483	rs76866386	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	2p21	NR	rs76866386-?	NR	4E-7		3.243486	[1.99-4.49] unit decrease	Illumina [32003504] (imputed)	N
921	chr2	44075482	44075483	rs76866386	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	2p21	NR	rs76866386-?	NR	2E-7		2.954259	[1.85-4.06] unit decrease	Illumina [31808917] (imputed)	N
921	chr2	44075482	44075483	rs76866386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs76866386-T	NR	3E-28		0.093	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44075482	44075483	rs76866386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs76866386-T	0.933	1E-26	(EA)	0.099	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44075482	44075483	rs76866386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs76866386-T	NR	4E-31		0.1	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44075482	44075483	rs76866386	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs76866386-T	0.933	4E-29	(EA)	0.106	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44075482	44075483	rs76866386	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	2p21	ABCG8	rs76866386-T	0.93	6E-33		0.139	[0.12-0.16] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
921	chr2	44077322	44077323	rs77673991	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p21	ABCG8	rs77673991-T	0.017311	2E-10		0.13606468	[0.094-0.178] unit decrease	Affymetrix [7288503] (imputed)	N
921	chr2	44079309	44079310	rs72875462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs72875462-C	NR	1E-25		0.088	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44079309	44079310	rs72875462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs72875462-C	0.933	3E-25	(EA)	0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44079309	44079310	rs72875462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs72875462-C	NR	7E-29		0.096	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44079309	44079310	rs72875462	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs72875462-C	0.933	1E-27	(EA)	0.104	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44079309	44079310	rs72875462	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	2p21	ABCG8	rs72875462-C	0.93	2E-35		0.148	[0.12-0.17] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
921	chr2	44080323	44080324	rs6709904	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p21	ABCG8	rs6709904-A	0.887416	9E-40		0.0435284	[0.037-0.05] unit increase	Affymetrix [NR] (imputed)	N
921	chr2	44080323	44080324	rs6709904	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p21	ABCG8	rs6709904-A	0.887429	1E-34		0.0402501	[0.034-0.047] unit increase	Affymetrix [NR] (imputed)	N
921	chr2	44081626	44081627	rs4076834	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p21		rs4076834-T	0.935766	2E-9		0.0475698	[0.032-0.063] unit increase	NR [11722792] (imputed)	N
921	chr2	44081626	44081627	rs4076834	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p21	ABCG8	rs4076834-?	NR	4E-9		0.0607567	[0.041-0.081] unit decrease	Illumina [4804024] (imputed)	N
921	chr2	44086590	44086591	rs4507142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gallbladder polyp	458 European ancestry cases, 340,083 European ancestry controls, 843 East Asian ancestry cases, 167,459 East Asian ancestry controls	NA	2p21		rs4507142-A	NR	2E-13		1.1754	[0.86-1.49] unit increase	Affymetrix, Illumina [20456458] (imputed)	N
921	chr2	44088095	44088096	rs60567145	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2p21		rs60567145-T	0.960374	2E-9		0.0665837	[0.045-0.088] unit decrease	NR [11722792] (imputed)	N
921	chr2	44092065	44092066	rs4603816	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2p21	ABCG8	rs4603816-?	NR	7E-37		2.845	[2.36-3.33] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
921	chr2	44096138	44096139	rs6740545	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p21	ABCG8	rs6740545-A	0.723863	4E-9		0.0147146685	[0.0098-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr2	44098825	44098826	rs72798837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs72798837-T	NR	2E-25		0.057	[0.046-0.068] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44098825	44098826	rs72798837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs72798837-T	NR	7E-27		0.0588	[0.048-0.07] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44098825	44098826	rs72798837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs72798837-T	NR	4E-19		0.049	[0.038-0.06] unit increase	Affymetrix [9000000] (imputed)	N
921	chr2	44099581	44099582	rs4148218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs4148218-A	NR	4E-57		0.049	[0.043-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr2	44099581	44099582	rs4148218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p21	NR	rs4148218-A	NR	1E-62		0.0515	[0.045-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr2	44099581	44099582	rs4148218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p21	NR	rs4148218-A	NR	8E-45		0.0433	[0.037-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
921	chr2	44100076	44100077	rs6756778	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p21	NR	rs6756778-G	0.555	4E-6	(EA)	0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
921	chr2	44115182	44115183	rs1136998	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p21	LRPPRC	rs1136998-A	0.1051	1E-9		0.020011662	[0.014-0.026] unit decrease	Affymetrix [11514654] (imputed)	N
921	chr2	44116835	44116836	rs2955280	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p21	NR	rs2955280-T	NR	5E-8		5.455	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
921	chr2	44116922	44116923	rs147302249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p21		rs147302249-T	0.021286171	1E-10		0.2060604	[0.14-0.27] unit increase	Illumina [13429980] (imputed)	N
921	chr2	44129020	44129021	rs117525187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	2p21		rs117525187-G	0.021423	4E-13		0.0905422	[0.066-0.115] unit increase	Illumina [13476599] (imputed)	N
921	chr2	44129020	44129021	rs117525187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	2p21		rs117525187-G	0.021088	2E-13		0.124004	[0.091-0.157] unit increase	Illumina [13461863] (imputed)	N
921	chr2	44135313	44135314	rs13387221	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	2p21	LRPPRC	rs13387221-A	0.174669	1E-8		0.060807094	[0.04-0.082] unit decrease	Affymetrix [7288503] (imputed)	N
921	chr2	44135313	44135314	rs13387221	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	2p21	NR	rs13387221-A	0.187	9E-6		0.064	[0.035-0.093] unit increase	Affymetrix, Illumina [138093] (imputed)	N
921	chr2	44151807	44151808	rs4952693	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	2p21	LRPPRC	rs4952693-T	0.3734	1E-8		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
922	chr2	44178777	44178778	rs13415134	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	2p21	LRPPRC	rs13415134-?	NR	2E-8		0.059	[0.037-0.081] unit increase	NR [7682250] (imputed)	N
922	chr2	44185128	44185129	rs4347883	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p21	NR	rs4347883-T	0.430417	3E-8		0.034997586	[0.023-0.047] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
922	chr2	44185128	44185129	rs4347883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p21	Intergenic	rs4347883-T	0.5531	3E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
922	chr2	44213989	44213990	rs10183431	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p21	LRPPRC	rs10183431-T	0.239911	5E-8		0.03609256	[0.023-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
922	chr2	44221159	44221160	rs13017251	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p21	LRPPRC	rs13017251-A	0.494	4E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
922	chr2	44241154	44241155	rs10186876	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p21	NR	rs10186876-?		3E-6		0.0106434	[0.0062-0.0151] unit decrease	Affymetrix [19400418] (imputed)	N
922	chr2	44241154	44241155	rs10186876	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	2p21	NR	rs10186876-?		7E-10		0.0144048	[0.0098-0.019] unit increase	Affymetrix [19400418] (imputed)	N
922	chr2	44241154	44241155	rs10186876	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	2p21	LRPPRC	rs10186876-A	0.361	1E-10		0.1469	[0.1-0.19] kg increase	Affymetrix [at least 17000000] (imputed)	N
922	chr2	44248563	44248564	rs62137124	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p21		rs62137124-T	0.882	3E-18		0.016	[0.012-0.02] unit increase	NR [NR] (imputed)	N
922	chr2	44250148	44250149	rs62137126	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p21	NR	rs62137126-G	0.121	6E-11		0.0108963	[0.0076-0.0142] unit decrease	NR [9732723] (imputed)	N
922	chr2	44250148	44250149	rs62137126	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p21	NR	rs62137126-G	0.121094	1E-9	(Conditioned on chr2:45159091)	0.023691086	[0.016-0.031] unit decrease	NR [~ 10000000] (imputed)	N
922	chr2	44256640	44256641	rs13016225	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p21	PPM1B	rs13016225-?	NR	6E-6	(PC 38:5)	0.15013593	[0.085-0.215] unit decrease	Affymetrix [at least 2500000] (imputed)	N
922	chr2	44262448	44262449	rs56097173	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p21	NR	rs56097173-T	0.6808	3E-10		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
922	chr2	44262448	44262449	rs56097173	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p21	NA	rs56097173-T	0.6744	9E-9	(Female)	1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
922	chr2	44271495	44271496	rs75120545	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2p21	NR	rs75120545-?	NR	7E-6		0.296996	[0.17-0.43] unit increase	NR [13958389] (imputed)	N
922	chr2	44271495	44271496	rs75120545	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p21	NR	rs75120545-C		8E-17		0.28	[0.22-0.34] unit increase	NR [NR]	N
922	chr2	44271495	44271496	rs75120545	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p21	LRPPRC, PPM1B	rs75120545-T	0.0319	7E-17		1.0972		Affymetrix [11880941] (imputed)	N
922	chr2	44271495	44271496	rs75120545	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p21	LRPPRC, PPM1B	rs75120545-T	0.0319	7E-17		1.0900244		Affymetrix [11880941] (imputed)	N
922	chr2	44271495	44271496	rs75120545	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	2p21	LRPPRC	rs75120545-T	0.0302	6E-9		0.043	[0.028-0.058] unit decrease	Illumina [~ 250000] (imputed)	N
922	chr2	44271495	44271496	rs75120545	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p21	PPM1B	rs75120545-T	0.0304	1E-11		0.046933442	[0.033-0.06] unit decrease	Affymetrix [11515109] (imputed)	N
922	chr2	44271495	44271496	rs75120545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p21		rs75120545-?	NR	3E-8				NR [~ 8900000] (imputed)	N
922	chr2	44271495	44271496	rs75120545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p21		rs75120545-?	NR	1E-12				NR [~ 8900000] (imputed)	N
922	chr2	44283171	44283172	rs17031893	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	2p21	LRPPRC	rs17031893-G	0.08	7E-6		3.24	[1.89-5.55]	Affymetrix [583535] (imputed)	N
922	chr2	44284923	44284924	rs10202948	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	2p21		rs10202948-?	NR	3E-8		0.4527	[0.29-0.61] unit decrease	Affymetrix [NR] (imputed)	N
922	chr2	44296001	44296002	rs62135521	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2p21	LRPPRC	rs62135521-G	0.9513	3E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix [~ 7740000] (imputed)	N
922	chr2	44296001	44296002	rs62135521	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p21	PPM1B	rs62135521-T	0.049	1E-9		0.036076322	[0.024-0.048] unit decrease	Affymetrix [~ 11515000] (imputed)	N
922	chr2	44296279	44296280	rs12185607	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	2p21	LRPPRC	rs12185607-T	0.1	5E-6		2.86	[1.79-4.57]	Affymetrix [583535] (imputed)	N
922	chr2	44298774	44298775	rs75199129	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2p21	NR	rs75199129-T	0.039	2E-9		0.032751746	[0.022-0.043] unit decrease	Affymetrix [10613246] (imputed)	N
922	chr2	44298774	44298775	rs75199129	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p21	NR	rs75199129-T	0.0387	4E-11		0.030089665	[0.021-0.039] unit decrease	Affymetrix [NR] (imputed)	N
922	chr2	44299878	44299879	rs62135525	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2p21	PPM1B	rs62135525-T	0.0495	3E-11		0.0342315	[0.024-0.044] unit decrease	Affymetrix [11514936] (imputed)	N
923	chr2	44305460	44305461	rs10495912	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	2p21	LRPPRC	rs10495912-A	0.07	6E-7		4.03	[2.24-7.24]	Affymetrix [583535] (imputed)	N
923	chr2	44312696	44312697	rs10166377	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p21	NR	rs10166377-A	0.165	4E-8		0.00983451	[0.0063-0.0134] unit decrease	NR [~ 9732723] (imputed)	N
923	chr2	44316108	44316109	rs11683295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p21	NR	rs11683295-G	NR	1E-9		0.0266	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
923	chr2	44326027	44326028	rs62135536	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p21		rs62135536-C	0.968	8E-10		0.035	[0.023-0.047] unit increase	Affymetrix [up to 90000000] (imputed)	N
923	chr2	44326027	44326028	rs62135536	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p21		rs62135536-T	0.03132	1E-8		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
923	chr2	44333050	44333051	rs62135538	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2p21	RNU6-566P	rs62135538-C	0.07	9E-6		1.47	[0.82-2.12] g/day increase	Affymetrix [10353649] (imputed)	N
923	chr2	44338079	44338080	rs13420007	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2p21		rs13420007-?	NR	6E-6	(endometrioid)	1.56		Illumina [11595112] (imputed)	N
923	chr2	44347952	44347953	rs62136965	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2p21	NR	rs62136965-C	NR	1E-9		0.0352	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
923	chr2	44390368	44390369	rs6544743	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p21	PPM1B	rs6544743-T	0.2138	2E-7		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
923	chr2	44390368	44390369	rs6544743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs6544743-?	NR	4E-43				NR [~ 8900000] (imputed)	N
923	chr2	44393531	44393532	rs7593987	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	AC013717.1	rs7593987-A	0.1914	1E-19		0.0217	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
923	chr2	44422110	44422111	rs67537903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p21		rs67537903-A	NR	2E-41		0.0209	[0.018-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
923	chr2	44422110	44422111	rs67537903	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p21	PPM1B	rs67537903-?	NR	2E-17		0.027786104	[0.021-0.034] unit decrease	Illumina [27896057] (imputed)	N
924	chr2	44454878	44454879	rs13388339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p21		rs13388339-A	0.29616	2E-14		0.0168316	[0.013-0.021] unit increase	Illumina [13479295] (imputed)	N
924	chr2	44462132	44462133	rs11124981	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p21	NR	rs11124981-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
924	chr2	44464628	44464629	rs4953074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p21	Intergenic	rs4953074-T	0.8045	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
924	chr2	44473157	44473158	rs149763434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs149763434-A	0.0325212	8E-10				Affymetrix, Illumina [21126107] (imputed)	N
924	chr2	44473157	44473158	rs149763434	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2p21	NR	rs149763434-A	0.033508	5E-11		0.037848	[0.027-0.049] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
924	chr2	44473972	44473973	rs10460534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p21		rs10460534-?	NR	4E-9				NR [~ 8900000] (imputed)	N
924	chr2	44478648	44478649	rs12712914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p21	PPM1B	rs12712914-C	NR	3E-8		0.0202191	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
924	chr2	44480949	44480950	rs4953076	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p21	PPM1B	rs4953076-G	0.25	4E-9		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
924	chr2	44497827	44497828	rs6725676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p21		rs6725676-?	NR	1E-7				NR [~ 8900000] (imputed)	N
924	chr2	44544114	44544115	rs10514789	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs10514789-A	0.02613	9E-9	(HSD17B11)	0.09175	NR unit increase	Illumina [1671387] (imputed)	N
924	chr2	44547573	44547574	rs698761	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	2p21	SLC3A1, PREPL	rs698761-G	NR	5E-6	(DDD)	0.2023	[NR] unit decrease	Illumina [1190033]	N
924	chr2	44549541	44549542	rs72804907	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PREPL	rs72804907-?	NR	2E-10	(male)	2.59507	[NR] unit decrease	Affymetrix [NR] (imputed)	N
924	chr2	44557918	44557919	rs9309116	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p21	PREPL	rs9309116-T		5E-11		0.006	[0.0042-0.0078] unit increase	Affymetrix [13304133] (imputed)	N
925	chr2	44570079	44570080	rs140918549	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	2p21	PREPL	rs140918549-?	NR	5E-6	(conditioned on rs168622)	0.379	[0.22-0.54] unit decrease	Affymetrix [9346801] (imputed)	N
925	chr2	44572163	44572164	rs2053457	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p21	NR	rs2053457-C	0.2465	1E-15		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
925	chr2	44576096	44576097	rs72804946	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PREPL	rs72804946-?	NR	1E-14		1.80506	[NR] unit decrease	Affymetrix [NR] (imputed)	N
925	chr2	44582062	44582063	rs73924703	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs73924703-A	0.0122	2E-8	(ECI2)	7.404	NR unit increase	Illumina [1671387] (imputed)	N
925	chr2	44584775	44584776	rs34771070	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs34771070-C	0.01916	2E-8	(HSD17B11)	0.1046	NR unit increase	Illumina [1671387] (imputed)	N
925	chr2	44628528	44628529	rs1067327	31886626	Hettema JM	2019-12-30	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of shared liability to anxiety disorders in Army STARRS.	Anxiety disorder (factor score)	28,950 European ancestry individuals, 2,482 African American individuals, 3,264 Latino individuals	NA	2p21	NR	rs1067327-?	NR	3E-9		0.0253	NR unit increase	Illumina [up to 10000000] (imputed)	N
925	chr2	44628528	44628529	rs1067327	26754954	Otowa T	2016-01-12	Mol Psychiatry	Meta-analysis of genome-wide association studies of anxiety disorders.	Anxiety disorder (factor score)	18,186 European ancestry individuals	NA	2p21	CAMKMT	rs1067327-C	0.34	3E-9		0.028	[0.019-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 6500000] (imputed)	N
925	chr2	44638122	44638123	rs1067394	31886626	Hettema JM	2019-12-30	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of shared liability to anxiety disorders in Army STARRS.	Anxiety disorder (factor score)	28,950 European ancestry individuals, 2,482 African American individuals, 3,264 Latino individuals	NA	2p21	NR	rs1067394-?	NR	8E-10		0.0257	NR unit increase	Illumina [up to 10000000] (imputed)	N
925	chr2	44647830	44647831	rs17498753	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	2p21	CAMKMT	rs17498753-A		5E-6		0.328	[0.19-0.47] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
925	chr2	44662474	44662475	rs13414205	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2p21	CAMKMT	rs13414205-A		7E-8	(AA)			Illumina [NR]	N
925	chr2	44669723	44669724	rs1067352	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	2p21	NR	rs1067352-T	NR	5E-6	(DDD)	0.2124	NR unit decrease	Illumina [1190033]	N
925	chr2	44689668	44689669	rs698796	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p21	NR	rs698796-?	NR	7E-7		0.008722	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
925	chr2	44693058	44693059	rs77915397	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2p21	CAMKMT	rs77915397-A	0.932	1E-8		0.022012392	[0.014-0.03] unit decrease	Illumina [9339358] (imputed)	N
925	chr2	44694381	44694382	rs10190127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs10190127-C	0.02439	3E-9	(UGT1A1)	0.1582	NR unit increase	Illumina [1671387] (imputed)	N
925	chr2	44694381	44694382	rs10190127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs10190127-C	0.02439	2E-8	(PON1)	0.1138	NR unit increase	Illumina [1671387] (imputed)	N
925	chr2	44694381	44694382	rs10190127	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs10190127-C	0.02439	1E-8	(UGT2B15)	0.3132	NR unit increase	Illumina [1671387] (imputed)	N
926	chr2	44705614	44705615	rs698813	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	2p21	C2orf34	rs698813-C	0.52	1E-6	(Allelic)	4.27	[2.35-7.76]	Illumina [555600]	N
926	chr2	44710168	44710169	rs2592199	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p21		rs2592199-C	0.7693	1E-14		0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
926	chr2	44717070	44717071	rs13403127	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p21	CAMKMT	rs13403127-G	0.6319	1E-14		1.025641		Affymetrix [11880941] (imputed)	N
926	chr2	44718289	44718291	rs201007456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p21		rs201007456-C	NR	3E-8		0.015	[0.0097-0.0203] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
926	chr2	44719892	44719893	rs786420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p21	NR	rs786420-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
926	chr2	44719892	44719893	rs786420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p21		rs786420-?	NR	2E-9				NR [~ 8900000] (imputed)	N
926	chr2	44719892	44719893	rs786420	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p21	NA	rs786420-T	0.7708	2E-12		0.0139	[0.01-0.0178] unit increase	NR [~ 27400000] (imputed)	N
926	chr2	44735437	44735438	rs698833	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	2p21	CAMKMT	rs698833-T	NR	2E-6	(DDD)	0.2322	[NR] unit decrease	Illumina [1190033]	N
926	chr2	44735952	44735953	rs786406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p21		rs786406-?	NR	4E-11				NR [~ 8900000] (imputed)	N
926	chr2	44754019	44754020	rs72881110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p21		rs72881110-A	0.0753	4E-8		0.0146	[0.0093-0.0199] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
926	chr2	44767884	44767885	rs2880051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CAMKMT	rs2880051-?	NR	3E-8	(male)	1.77507	[NR] unit decrease	Affymetrix [NR] (imputed)	N
926	chr2	44768201	44768202	rs2341459	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p21	C2orf34	rs2341459-T	0.27	8E-10		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
926	chr2	44769890	44769891	rs57440956	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Ruminiclostridium6 id.11356)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p21		rs57440956-T	NR	4E-8		5.4875746	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
926	chr2	44774201	44774202	rs897080	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p21	C2orf34	rs897080-T	0.743	2E-16		0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
926	chr2	44801891	44801892	rs55795624	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p21	CAMKMT	rs55795624-T	0.929	5E-8		0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
926	chr2	44810479	44810480	rs10201401	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p21		rs10201401-A	NR	2E-8		0.0421	[0.027-0.057] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
927	chr2	44854980	44854981	rs12468040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p21		rs12468040-?	NR	6E-16				NR [~ 8900000] (imputed)	N
927	chr2	44854980	44854981	rs12468040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p21		rs12468040-T	0.3819	3E-21		0.0137	[0.011-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
927	chr2	44854980	44854981	rs12468040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p21	Intergenic	rs12468040-T	0.3819	1E-19	(MTAG)	0.0122	[0.0097-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
927	chr2	44858686	44858687	rs10191477	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p21	CAMKMT	rs10191477-T	0.386	2E-11		0.0081	[0.0057-0.0105] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
927	chr2	44860463	44860464	rs62132320	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CAMKMT	rs62132320-?	NR	1E-10		1.22552	[NR] unit decrease	Affymetrix [NR] (imputed)	N
927	chr2	44862138	44862139	rs1579641	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p21	CAMKMT	rs1579641-A	0.6595	7E-15		1.0252		Affymetrix [11880941] (imputed)	N
927	chr2	44866892	44866893	rs4324362	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	2p21	CAMKMT	rs4324362-G	0.379905	1E-11		0.0266273	[0.019-0.034] unit increase	Affymetrix [641018] (imputed)	N
927	chr2	44880924	44880925	rs12998046	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p21	CAMKMT	rs12998046-A	0.6167	1E-9		0.0105904	[0.0072-0.014] unit increase	Affymetrix [11880941] (imputed)	N
927	chr2	44886143	44886144	rs72792395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p21		rs72792395-T	0.1093	1E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
927	chr2	44894141	44894142	rs11893991	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	CAMKMT	rs11893991-A	0.4266	2E-9		0.0116	[0.0079-0.0153] unit increase	Affymetrix [18391927] (imputed)	N
927	chr2	44902359	44902360	rs12612153	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced proteinuria	1,039 European ancestry individuals	NA	2p21	C2orf34	rs12612153-?	0.11	7E-6		1.15	[0.64-1.66] unit increase	Illumina [828141]	N
927	chr2	44956339	44956340	rs343968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs343968-?	NR	1E-20				NR [~ 8900000] (imputed)	N
928	chr2	44973790	44973791	rs343949	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2p21	CAMKMT	rs343949-A	0.172046	9E-10		6.13	z score increase	NR [~ 10847151] (imputed)	N
928	chr2	44999708	44999709	rs343954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p21		rs343954-C	NR	3E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
928	chr2	45032160	45032161	rs138082585	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	2p21	NR	rs138082585-CG		4E-6		0.3585	[0.21-0.51] unit decrease	Illumina [12759548] (imputed)	N
928	chr2	45043737	45043738	rs142177921	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs142177921-G	0.01045	2E-8	(GAMT)	0.1967	NR unit increase	Illumina [1671387] (imputed)	N
928	chr2	45046338	45046339	rs62134189	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p21	CAMKMT	rs62134189-A	0.896658	1E-9		0.0141965	[0.0096-0.0188] unit increase	Affymetrix [12370749]	N
928	chr2	45060476	45060477	rs114059891	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2p21	NR	rs114059891-?	NR	2E-6		0.52	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
928	chr2	45071489	45071490	rs182495294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p21		rs182495294-G	NR	4E-9		0.0683	[0.046-0.091] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
928	chr2	45073512	45073513	rs6544773	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p21	Intergenic	rs6544773-C	NR	8E-6		0.0234055	[0.013-0.034] unit increase	Illumina [13520550] (imputed)	N
928	chr2	45081078	45081079	rs340502	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	2p21	NR	rs340502-A	0.3449	3E-6		0.1514	[0.089-0.214] unit decrease	Illumina [10677593] (imputed)	N
929	chr2	45137869	45137870	rs17032696	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p21	ABCG8, LRPPRC, PPM1B, SLC3A1, PREPL, CAMKMT, SIX3, SIX2	rs17032696-?		3E-26				Affymetrix, Illumina [NR] (imputed)	N
929	chr2	45137869	45137870	rs17032696	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p21	CAMKMT, SIX3	rs17032696-A	0.7718	8E-9		5.766	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
929	chr2	45138506	45138507	rs540606	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	2p21	SIX3	rs540606-A	0.409	9E-11		6.49	NR z score decrease	Affymetrix [up to 12500000] (imputed)	N
929	chr2	45141179	45141180	rs494904	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2p21	SIX3	rs494904-T	0.5961	2E-15		7.926	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
929	chr2	45141179	45141180	rs494904	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	2p21	NR	rs494904-T	0.5894	2E-12		7.014	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
929	chr2	45141217	45141218	rs518853	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p21	NR	rs518853-A	0.603	3E-22		0.017128013	[0.014-0.021] unit increase	Affymetrix [NR] (imputed)	N
929	chr2	45142672	45142673	rs570436	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2p21	NR	rs570436-T	0.569	3E-23		0.02082119	[0.017-0.025] unit increase	Affymetrix [10613246] (imputed)	N
929	chr2	45142672	45142673	rs570436	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder	34,658 European American cases, 167,346 European American controls, 17,267 African American cases, 39,381 African American controls, 3,449 Latino American cases, 10,726 Latino American controls, 164 East Asian American cases, 1,210 East Asian American controls, 46 South Asian American cases, 144 South Asian American controls	NA	2p21	SIX3	rs570436-T	0.423	2E-10	(EA)	1.0577533	[1.04-1.08]	Affymetrix [up to 12500000] (imputed)	N
929	chr2	45143381	45143382	rs542883	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	2p21	NR	rs542883-C	0.559253	1E-14		0.0079359	[0.0059-0.01] unit increase	Affymetrix [7736308] (imputed)	N
929	chr2	45143381	45143382	rs542883	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	2p21	SIX3	rs542883-C	0.56	2E-8		1.023	[1.015-1.031]	Affymetrix [7736308] (imputed)	N
929	chr2	45143381	45143382	rs542883	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	2p21	NR	rs542883-C	0.57	9E-8		0.029	[0.019-0.039] unit increase	Affymetrix [NR] (imputed)	N
929	chr2	45151615	45151616	rs490340	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p21	TBX15, WARS2	rs490340-?		4E-15				NR [7428630] (imputed)	N
929	chr2	45151615	45151616	rs490340	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p21	SIX3	rs490340-?		2E-18				NR [7428630] (imputed)	N
929	chr2	45152521	45152522	rs4953148	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	2p21	LINC01833	rs4953148-A	NR	2E-8		5.59	[NR] z score decrease	NR [16213998]	N
929	chr2	45152747	45152748	rs2342406	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2p21	CAMKMT, SIX3	rs2342406-?	NR	8E-12		1.065	[1.046-1.085]	Illumina [13762925] (imputed)	N
929	chr2	45154417	45154418	rs7569203	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p21		rs7569203-A	0.689	7E-13		0.016	[0.012-0.02] unit decrease	Affymetrix [up to 90000000] (imputed)	N
929	chr2	45154417	45154418	rs7569203	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	2p21	SIX3	rs7569203-C	0.317	4E-8		0.0218	[0.014-0.03] unit increase	Illumina [~ 250000] (imputed)	N
929	chr2	45154688	45154689	rs504675	33861876	Dao C	2021-04-16	Addiction	The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C.	Alcohol use disorder (consumption score)	5,135 European ancestry individuals inluding former drinkers, 126,375 European ancestry individuals excluding former drinkers	NR	2p21	RP11-89 K21.1	rs504675-?	NR	6E-9		0.064	[0.042-0.086] unit decrease	NR [7682250] (imputed)	N
929	chr2	45154907	45154908	rs528301	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2p21	SIX3	rs528301-A	0.552	7E-13		0.0165	[0.012-0.021] unit increase	Illumina [~ 250000] (imputed)	N
929	chr2	45154907	45154908	rs528301	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	2p21	SIX3	rs528301-A	0.553	7E-17		0.0213	[0.016-0.026] unit increase	Illumina [~ 250000] (imputed)	N
929	chr2	45154907	45154908	rs528301	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p21	SIX3	rs528301-A	0.5523	3E-16		0.021161621	[0.016-0.026] unit increase	Affymetrix [~ 11515000] (imputed)	N
929	chr2	45154907	45154908	rs528301	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2p21	SIX3	rs528301-A	0.5525	1E-19		0.020386197	[0.016-0.025] unit increase	Affymetrix [11514936] (imputed)	N
929	chr2	45154907	45154908	rs528301	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2p21	SIX3	rs528301-A	0.38	4E-11		0.0136	[0.0097-0.0175] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
929	chr2	45154907	45154908	rs528301	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	2p21	SIX3	rs528301-?	NR	5E-6				Illumina [805814]	N
929	chr2	45155275	45155276	rs13383034	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p21	NR	rs13383034-T	0.329	6E-22		0.014926977	[0.012-0.018] unit increase	NR [~ 10000000] (imputed)	N
929	chr2	45157162	45157163	rs163229	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p21		rs163229-C	0.9775	4E-8		0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
929	chr2	45157335	45157336	rs4953150	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p21	SIX3	rs4953150-?	NR	4E-14		0.0194756	[0.014-0.025] unit increase	Affymetrix [25921788] (imputed)	N
929	chr2	45157335	45157336	rs4953150	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p21	SIX3	rs4953150-?	NR	6E-14		0.0193152	[0.014-0.024] unit increase	Affymetrix [25921788] (imputed)	N
929	chr2	45157335	45157336	rs4953150	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p21	SIX3	rs4953150-?	NR	2E-8	(female)	0.0196837	[0.013-0.027] unit increase	Affymetrix [25921788] (imputed)	N
929	chr2	45157552	45157553	rs163524	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p21	SIX3	rs163524-C	0.82	2E-8				Affymetrix, Illumina [8002429] (imputed)	N
929	chr2	45157552	45157553	rs163524	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p21	SIX3	rs163524-A	0.18	1E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
929	chr2	45157552	45157553	rs163524	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p21	SIX3	rs163524-?	NR	3E-8		0.0933	[0.061-0.126] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
929	chr2	45157552	45157553	rs163524	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p21	SIX3	rs163524-C	0.821	3E-9		0.099	[0.066-0.132] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
929	chr2	45157552	45157553	rs163524	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p21	LINC01833	rs163524-C	0.8204	1E-9		0.11	[0.074-0.146] unit decrease	Affymetrix [~ 11900000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p21		rs1004787-G	0.46	6E-12		6.89	z score increase	Affymetrix [9061022] (imputed)	N
929	chr2	45159090	45159091	rs1004787	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p21		rs1004787-G	0.467	1E-32		0.014	[0.012-0.016] unit decrease	NR [NR] (imputed)	N
929	chr2	45159090	45159091	rs1004787	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	2p21	CAMKMT, SIX3-AS1	rs1004787-A		4E-8		1.052	[NR]	Affymetrix [~ 79000000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2p21	CAMKMT, SIX3-AS1	rs1004787-G		7E-22		0.967	[NR]	Affymetrix [up to 79000000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	2p21	NR	rs1004787-A	0.5306	9E-11		1.0333781	NR	NR [8968716] (imputed)	N
929	chr2	45159090	45159091	rs1004787	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2p21	NR	rs1004787-G	NR	6E-6		0.009248	[0.0052-0.0133] unit increase	Illumina [~ 540852]	N
929	chr2	45159090	45159091	rs1004787	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2p21	RP11-89K21.1, SIX3	rs1004787-A	0.54	7E-17		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2p21	SIX3-AS1	rs1004787-A	0.5328	2E-17		0.0087	[0.0067-0.0107] unit increase	Affymetrix [~ 7740000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p21	SIX3	rs1004787-A	0.5303	4E-16		0.017661564	[0.013-0.022] unit increase	Affymetrix [11514654] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p21	NR	rs1004787-A	0.552	5E-43		0.0149653	[0.013-0.017] unit increase	NR [9732723] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p21	NR	rs1004787-A	0.552	1E-28		0.028414343	[0.023-0.033] unit increase	NR [~ 10000000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p21	NR	rs1004787-A	0.558	3E-13		0.0113736	[0.0083-0.0144] unit increase	NR [9732723] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p21	NR	rs1004787-A	0.551	5E-32		0.0157003	[0.013-0.018] unit increase	NR [~ 9732723] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p21	NR	rs1004787-A	0.550918	8E-9	(Conditioned on chr2:45155276)	0.008442835	[0.0056-0.0113] unit increase	NR [~ 10000000] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p21	NR	rs1004787-A	0.557	2E-17		0.0125114	[0.0096-0.0154] unit decrease	NR [9732723] (imputed)	N
929	chr2	45159090	45159091	rs1004787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p21		rs1004787-?	NR	9E-19				NR [~ 8900000] (imputed)	N
929	chr2	45167885	45167886	rs741813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p21	Intergenic	rs741813-A	0.5637	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
929	chr2	45167885	45167886	rs741813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p21	Intergenic	rs741813-A	0.563	4E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
929	chr2	45170152	45170153	rs4953152	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p21	NR	rs4953152-A	0.306	2E-13				NR [9056863] (imputed)	N
929	chr2	45170152	45170153	rs4953152	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p21	NR	rs4953152-?	NR	1E-6		0.0085471	[0.0051-0.012] unit decrease	Affymetrix [805426] (imputed)	N
929	chr2	45170152	45170153	rs4953152	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2p21	SIX3	rs4953152-A	0.315074	9E-10		6.13	z score increase	NR [~ 10847151] (imputed)	N
929	chr2	45171545	45171546	rs62131236	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p21	NR	rs62131236-T	NR	5E-8		5.459	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
929	chr2	45171545	45171546	rs62131236	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p21	NR	rs62131236-?	NR	8E-8		5.359	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
929	chr2	45172511	45172512	rs147268199	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2p21	NR	rs147268199-?	NR	3E-7		0.508214	[0.31-0.7] unit increase	NR [13958389] (imputed)	N
929	chr2	45172511	45172512	rs147268199	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p21	NR	rs147268199-G		4E-9		0.31	[0.21-0.41] unit increase	NR [NR]	N
929	chr2	45175288	45175289	rs338070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p21		rs338070-?	NR	4E-8				NR [~ 8900000] (imputed)	N
929	chr2	45175520	45175521	rs534567	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2p21	SIX3	rs534567-A	0.4117	3E-18		0.01720256	[0.013-0.021] unit decrease	Illumina [9339358] (imputed)	N
929	chr2	45175584	45175585	rs173076	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p21	SIX3	rs173076-A	0.593	2E-16		0.0099	[0.0075-0.0123] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
929	chr2	45188352	45188353	rs895636	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2p21	SIX2, SIX3	rs895636-T	0.42	7E-25		0.11	[0.088-0.132] unit increase	Affymetrix [774398] (imputed)	N
929	chr2	45188352	45188353	rs895636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p21	NR	rs895636-T	NR	2E-13		0.0221	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
929	chr2	45188352	45188353	rs895636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2p21	NR	rs895636-T	NR	4E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
929	chr2	45188352	45188353	rs895636	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood glucose	5,786 Chinese ancestry individuals	NA	2p21	SIX3, SIX2	rs895636-T	0.4	2E-8		0.099	[0.064-0.134] unit increase	Illumina [8045193] (imputed)	N
929	chr2	45188352	45188353	rs895636	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	2p21	SIX2, SIX3	rs895636-?	NR	3E-13		0.069	[0.049-0.089] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
929	chr2	45188352	45188353	rs895636	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2p21	SIX2, SIX3	rs895636-A	0.38	1E-12	(FPG)	0.0393	[0.029-0.050] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
929	chr2	45189736	45189737	rs79368540	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p21	SIX3, SIX2	rs79368540-T	0.149195195	6E-7		1.0928439	[1.055370239-1.131648127]	Illumina [10439017] (imputed)	N
929	chr2	45190056	45190056	rs5830819	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	2p21	SIX3	rs5830819-A	0.6014	6E-19		0.0384	[0.03-0.047] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
929	chr2	45191999	45192000	rs10168523	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	2p21	SIX3, SIX2	rs10168523-G	0.456	9E-9		0.0288	[0.019-0.039] unit increase	Illumina [7135436] (imputed)	N
929	chr2	45192079	45192080	rs12712928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p21		rs12712928-C	NR	1E-24		0.0257	[0.021-0.031] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
929	chr2	45192079	45192080	rs12712928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2p21		rs12712928-C	NR	5E-64		0.041	[0.036-0.046] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
929	chr2	45192079	45192080	rs12712928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	2p21		rs12712928-C	0.412397	2E-42		0.0481623	[0.041-0.055] unit increase	Illumina [13476509] (imputed)	N
929	chr2	45192079	45192080	rs12712928	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	2p21	SIX3	rs12712928-C	0.3904	2E-15		0.0234	[0.018-0.029] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
929	chr2	45192079	45192080	rs12712928	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2p21	SIX3	rs12712928-C	0.402	2E-14		1.06	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
929	chr2	45192079	45192080	rs12712928	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p21	NR	rs12712928-G	0.829913	4E-10		0.0162951	[0.011-0.021] unit decrease	NR [NR]	N
929	chr2	45192079	45192080	rs12712928	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	2p21	SIX3, SIX2	rs12712928-?	NR	4E-17		0.05991	[0.046-0.074] unit increase novel	Illumina [6108953] (imputed)	N
929	chr2	45192079	45192080	rs12712928	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	2p21	SIX3, SIX2	rs12712928-?	NR	7E-46		0.06862	[0.059-0.078] unit increase novel	Illumina [6108953] (imputed)	N
930	chr2	45245164	45245165	rs2959223	32066683	Lacaze P	2020-01-27	Transl Psychiatry	Genetic associations with clozapine-induced myocarditis in patients with schizophrenia.	Clozapine-induced myocarditis in schizophrenia	33 cases, 62 controls	NA	2p21	SIX3, SIX2	rs2959223-A	0.3	4E-7		5.55	[1.44-21.26]	Illumina [6822414] (imputed)	N
930	chr2	45272811	45272812	rs921119	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	2p21	NR	rs921119-?	NR	9E-19	(Quadrant I (Philtrum), Segment 34)	0.044645097	NR unit increase	NR [7417619] (imputed)	N
930	chr2	45272811	45272812	rs921119	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	2p21	NR	rs921119-?	NR	2E-8	(Quadrant II (Nose), Segment 43)	0.03178111	NR unit decrease	NR [7417619] (imputed)	N
930	chr2	45272811	45272812	rs921119	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 36)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p21		rs921119-C	0.294244449	1E-46				Illumina [7417619] (imputed)	N
930	chr2	45273040	45273041	rs921120	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella size)	6,169 Latin American individuals	NA	2p21		rs921120-?	NR	1E-8				Illumina [8703729] (imputed)	N
930	chr2	45273040	45273041	rs921120	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	2p21		rs921120-?	NR	9E-6				Illumina [8703729] (imputed)	N
930	chr2	45314905	45314906	rs6544787	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Retinal arteriole-to-venule ratio	3,094 European ancestry individuals	NA	2p21	SIX2, SRBD1	rs6544787-T	NR	7E-7		0.008	[0.0041-0.0119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
930	chr2	45348276	45348277	rs17033059	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	LINC01121	rs17033059-A	0.839109	2E-10		0.0158752	[0.011-0.021] unit increase	NR [13737936] (imputed)	N
930	chr2	45348276	45348277	rs17033059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs17033059-?	NR	5E-9				NR [~ 8900000] (imputed)	N
930	chr2	45350660	45350661	rs35395759	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 44)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p21		rs35395759-T	0.276567944	4E-10				Illumina [7417619] (imputed)	N
931	chr2	45352631	45352632	rs6757058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs6757058-?	NR	3E-8				NR [~ 8900000] (imputed)	N
931	chr2	45401802	45401803	rs3914639	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p21		rs3914639-C	0.36	3E-24		10.16	z score increase	Affymetrix [9061022] (imputed)	N
931	chr2	45401802	45401803	rs3914639	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p21		rs3914639-C	0.36	5E-12		6.92	z score increase	Affymetrix [9061022] (imputed)	N
931	chr2	45401802	45401803	rs3914639	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p21	NR	rs3914639-C	0.3257	2E-12				NR [9056863] (imputed)	N
931	chr2	45401802	45401803	rs3914639	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p21		rs3914639-?	NR	7E-9				NR [9705931] (imputed)	N
931	chr2	45408268	45408269	rs6720296	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	2p21	LINC01121	rs6720296-?		5E-7	(disease-free survival)	1.74	[1.40-2.16]	Illumina [729737]	N
931	chr2	45408268	45408269	rs6720296	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	2p21	LINC01121	rs6720296-?		3E-6	(overall survival)	1.74	[1.38-2.19]	Illumina [729737]	N
931	chr2	45456389	45456390	rs885553	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Bipolar disorder (inflammation and infection response interaction)	397 Ashkenazi Jewish bipolar disorder cases, 241  Ashkenazi Jewish controls	NA	2p21	LINC01121, SRBD1	rs885553-?		8E-7	(anti-HSV1)			Affymetrix [516638]	N
932	chr2	45489632	45489633	rs17033285	30160337	Asleh R	2018-08-30	Clin Transplant	Genome Wide Association Study Reveals Novel Genetic Loci Associated With Change in Renal Function in Heart Transplant Recipients.	Glomerular filtration rate change in heart transplantation	243 European ancestry individuals, 1 American Indian ancestry individual, 7 individuals	NA	2p21	UNQ6975	rs17033285-T	0.09	4E-7		17.28	[10.75-23.81] unit increase	Illumina [314903] (imputed)	N
933	chr2	45632452	45632453	rs10490348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p21	PRKCE	rs10490348-?	NR	1E-6	(UDP glucose; UDP galactose)	0.19738778	[0.12-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
933	chr2	45646823	45646824	rs3213787	20363506	Meguro A	2010-04-02	Ophthalmology	Genome-wide association study of normal tension glaucoma: common variants in SRBD1 and ELOVL5 contribute to disease susceptibility.	Glaucoma	305 Japanese ancestry cases, 355 Japanese ancestry controls	NA	2p21	SRBD1	rs3213787-A	0.81	3E-9		2.8	[1.96-3.99]	Affymetrix [325947]	N
933	chr2	45669484	45669485	rs3770253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs3770253-?	NR	3E-11				NR [~ 8900000] (imputed)	N
933	chr2	45678605	45678606	rs115794329	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	2p21		rs115794329-C	0.980238	5E-6		0.0305691	[0.017-0.044] unit decrease	Illumina [13900000] (imputed)	N
934	chr2	45748276	45748277	rs34669198	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	2p21	SRBD1	rs34669198-?	NR	1E-6		0.3	[0.18-0.42] unit increase	Illumina [1075436] (imputed)	N
934	chr2	45752708	45752709	rs11125020	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p21	PRKCE	rs11125020-?	NR	3E-6	(UDP glucose; UDP galactose)	0.19477643	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
934	chr2	45762606	45762607	rs114076575	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		2p21	NR	rs114076575-T	0.9764145	5E-6		1.2485719	[1.38-1.25]	Affymetrix [16499239] (imputed)	N
934	chr2	45775994	45775995	rs728327	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p21	SRBD1	rs728327-?	0.3445	3E-10		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
934	chr2	45834075	45834076	rs7591446	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	2p21	SRBD1	rs7591446-C	0.809729138	5E-6		1.1134666	[1.06-1.17]	Illumina [10439017] (imputed)	N
935	chr2	45878759	45878760	rs687914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p21		rs687914-T	NR	5E-8		0.0364	[0.023-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
935	chr2	45878759	45878760	rs687914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p21		rs687914-T	NR	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
935	chr2	45878759	45878760	rs687914	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	PRKCE	rs687914-T	0.2514	8E-11		0.0141	[0.0098-0.0184] unit decrease	Affymetrix [18391927] (imputed)	N
935	chr2	45878759	45878760	rs687914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p21	PRKCE	rs687914-T	0.251165	2E-9		0.015721835	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
935	chr2	45878759	45878760	rs687914	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p21	PRKCE	rs687914-G	0.751808	5E-25		0.0219015	[0.018-0.026] unit increase	NR [13737936] (imputed)	N
935	chr2	45878759	45878760	rs687914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p21		rs687914-?	NR	4E-13				NR [~ 8900000] (imputed)	N
935	chr2	45878759	45878760	rs687914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p21		rs687914-?	NR	3E-25				NR [~ 8900000] (imputed)	N
935	chr2	45878759	45878760	rs687914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p21		rs687914-?	NR	2E-8				NR [~ 8900000] (imputed)	N
935	chr2	45878759	45878760	rs687914	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p21	PRKCE	rs687914-T	0.239	1E-11		0.2769	[0.2-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
935	chr2	45878759	45878760	rs687914	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p21	PRKCE	rs687914-T	0.251815207	4E-7		0.1622	[0.099-0.225] unit increase	Affymetrix [~ 9800000] (imputed)	N
935	chr2	45881296	45881297	rs665783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs665783-A	0.301528	2E-11		0.016189452	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
935	chr2	45881296	45881297	rs665783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs665783-?	NR	4E-10				NR [~ 8900000] (imputed)	N
935	chr2	45881296	45881297	rs665783	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p21		rs665783-?	NR	7E-24		0.0217937	[0.017-0.026] unit increase	Affymetrix [20259828] (imputed)	N
935	chr2	45886008	45886009	rs534288	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p21		rs534288-G	NR	6E-6		4.528747	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
935	chr2	45886008	45886009	rs534288	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p21		rs534288-G	NR	7E-6		4.49416	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
935	chr2	45886260	45886261	rs588206	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs588206-C	0.287976	1E-10		0.015615598	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
935	chr2	45886979	45886980	rs7563627	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p21	NR	rs7563627-?	NR	1E-8				Illumina [7760689] (imputed)	N
935	chr2	45889413	45889414	rs11679963	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs11679963-A	0.0331	2E-8	(TNC)	0.03598	NR unit increase	Illumina [1671387] (imputed)	N
935	chr2	45896436	45896437	rs582384	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p21	PRKCE	rs582384-?	NR	6E-9		0.0292339	[0.019-0.039] unit increase	Illumina [4804024] (imputed)	N
935	chr2	45896436	45896437	rs582384	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2p21	PRKCE	rs582384-A	0.5251	8E-9		0.0332	[0.022-0.045] unit increase	Affymetrix [at least 7947838] (imputed)	N
935	chr2	45896436	45896437	rs582384	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p21	PRKCE	rs582384-A	0.523	8E-9		0.037	[0.023-0.051] unit increase	Affymetrix [7947838] (imputed)	N
935	chr2	45988832	45988833	rs76131191	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2p21		rs76131191-?	NR	8E-6		1.2953	[1.18-1.41]	NR [680312]	N
935	chr2	45999987	45999988	rs12622534	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p21	PRKCE, SRBD1, EPAS1	rs12622534-A	0.407	2E-6		2.26	[1.6-3.19]	Illumina [1556551]	N
935	chr2	46000485	46000486	rs6759058	29432556	Brooke RJ	2018-02-08	J Natl Cancer Inst	A High-risk Haplotype for Premature Menopause in Childhood Cancer Survivors Exposed to Gonadotoxic Therapy.	Premature menopause in childhood cancer survivors	27 European ancestry cases, 3 African ancestry cases, 658 European ancestry controls, 111 African ancestry controls	NA	2p21	PRKCE	rs6759058-A	NR	9E-6		4.3	[2.14-8.64]	Affymetrix [10993255] (imputed)	N
935	chr2	46002159	46002160	rs6753292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs6753292-?	NR	1E-8				NR [~ 8900000] (imputed)	N
935	chr2	46005645	46005646	rs4953256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs4953256-C	0.795026	7E-12		0.018847307	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr2	46005645	46005646	rs4953256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs4953256-C	0.795054	7E-11		0.017934388	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr2	46033597	46033598	rs7591885	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p21	NR	rs7591885-?	NR	8E-6				Affymetrix [NR]	N
936	chr2	46055533	46055534	rs2012635	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p21	PRKCE	rs2012635-A	0.7253	4E-6		0.0356	[0.021-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
936	chr2	46056248	46056249	rs10865207	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p21	PRKCE	rs10865207-A	0.7255	5E-7		0.0388	[0.024-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
936	chr2	46063405	46063406	rs7591351	27315593	Lang M	2016-06-14	Eur Psychiatry	Genome-wide association study of pathological gambling.	Pathological gambling	445 European ancestry cases, 986 European ancestry controls	NA	2p21	PRKCE	rs7591351-T	NR	6E-6	(Adjusted for PC1-5, age and sex)	1.67	[1.34-2.09]	Illumina [595867]	N
936	chr2	46067439	46067440	rs2345626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p21	PRKCE	rs2345626-T	0.238079	8E-15		0.02024401	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
936	chr2	46067444	46067445	rs935655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs935655-G	0.761967	2E-10		0.016475309	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
936	chr2	46067444	46067445	rs935655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs935655-G	0.77267	4E-10				Affymetrix, Illumina [24649327] (imputed)	N
936	chr2	46067444	46067445	rs935655	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p21	NR	rs935655-G	0.761993	8E-12		0.014783	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
936	chr2	46073323	46073324	rs4953269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p21		rs4953269-?	NR	2E-8				NR [~ 8900000] (imputed)	N
936	chr2	46075676	46075677	rs6706095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p21		rs6706095-G	NR	3E-21		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
936	chr2	46075676	46075677	rs6706095	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p21		rs6706095-T	0.24	3E-14				Affymetrix [10369434] (imputed)	N
936	chr2	46075676	46075677	rs6706095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p21	PRKCE	rs6706095-G	0.760458	2E-17		0.022414109	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
936	chr2	46075676	46075677	rs6706095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p21	PRKCE	rs6706095-G	0.760428	4E-21		0.024911582	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
936	chr2	46075676	46075677	rs6706095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs6706095-G	0.771163	7E-21				Affymetrix, Illumina [24588908] (imputed)	N
936	chr2	46075676	46075677	rs6706095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p21	NR	rs6706095-G	0.760143	1E-20		0.019924	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
936	chr2	46076544	46076545	rs7561544	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p21		rs7561544-C	NR	2E-11		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
936	chr2	46076544	46076545	rs7561544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs7561544-C	0.767165	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
936	chr2	46076544	46076545	rs7561544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p21	NR	rs7561544-C	0.759058	6E-19		0.019399	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
936	chr2	46080401	46080402	rs10192064	30824882	Gunjaca I	2019-03-01	J Hum Genet	Genome-wide association meta-analysis for total thyroid hormone levels in Croatian population.	Triiodothyronine levels	623 Croatian ancestry individuals	NA	2p21	PRKCE	rs10192064-C	NR	3E-7		0.31	[0.19-0.43] nmol/L decrease	NR [8753628] (imputed)	N
937	chr2	46166320	46166321	rs12712955	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p21	PRKCE	rs12712955-A	0.5321	2E-8		0.0135	[0.0088-0.0182] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
937	chr2	46166320	46166321	rs12712955	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p21	PRKCE	rs12712955-A	0.532	2E-8		0.014	[0.0091-0.0189] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
937	chr2	46174417	46174418	rs12999972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs12999972-?	NR	9E-10				NR [~ 8900000] (imputed)	N
937	chr2	46176961	46176962	rs6751349	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	2p21	NR	rs6751349-A	0.36	8E-6		1.22	[0.69-1.75] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
937	chr2	46178142	46178143	rs59059541	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	2p21	NR	rs59059541-?	NR	5E-8	(Clostridium_xylanovorans)	0.545315	[0.36-0.73] unit increase	Illumina [5293637] (imputed)	N
937	chr2	46187837	46187838	rs72874349	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p21	NR	rs72874349-?	NR	5E-6		0.031822	[0.018-0.045] unit decrease	Affymetrix [805426] (imputed)	N
937	chr2	46194215	46194216	rs2595205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p21	PRKCE	rs2595205-T	0.241669	3E-9		0.015349503	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
937	chr2	46205038	46205039	rs13396424	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p21	PRKCE	rs13396424-G		8E-6		0.08	[0.04-0.11] unit increase	Affymetrix [~ 2500000] (imputed)	N
937	chr2	46225777	46225778	rs2122113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs2122113-C	0.44663	4E-18		0.019539824	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr2	46225777	46225778	rs2122113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs2122113-C	0.446623	3E-22		0.021950176	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr2	46225777	46225778	rs2122113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs2122113-C	0.446637	7E-19		0.020539152	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr2	46225940	46225941	rs6735880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs6735880-A	0.023473	3E-10		0.046947915	[0.032-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr2	46237445	46237446	rs1987070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs1987070-?	NR	2E-13				NR [~ 8900000] (imputed)	N
938	chr2	46275647	46275648	rs11682804	30324795	Moen GH	2018-09-18	Eur J Endocrinol	Genetic determinants of glucose levels in pregnancy: genetic risk scores analysis and GWAS in the Norwegian STORK cohort	Two-hour glucose in pregnancy (gestational week 30-32)	512 Scandinavian ancestry individuals	NA	2p21	PRKCE	rs11682804-G	NR	4E-8		0.34	[0.22-0.46] unit increase	Illumina [8709903] (imputed)	N
938	chr2	46278719	46278720	rs12712961	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Neuropsychiatric disorders	8,624 European ancestry cases, 48,013 European ancestry controls	NA	2p21		rs12712961-A	0.4520446	2E-8		1.1		Affymetrix [15621994] (imputed)	N
938	chr2	46278719	46278720	rs12712961	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p21	PRKCE	rs12712961-?		5E-6				Illumina [4322238] (imputed)	N
938	chr2	46293825	46293826	rs114948639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs114948639-T	0.0121790000000001	1E-39		0.13754551	[0.12-0.16] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46293825	46293826	rs114948639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs114948639-T	0.012176	1E-27		0.11488785	[0.094-0.136] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46293825	46293826	rs114948639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs114948639-T	0.0121790000000001	4E-32		0.12520319	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46293825	46293826	rs114948639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p21	PRKCE	rs114948639-T	0.0127	3E-15		0.1288778	[0.097-0.161] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46293825	46293826	rs114948639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2p21	PRKCE	rs114948639-T	0.0127	3E-15		0.1283579	[0.096-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46293825	46293826	rs114948639	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p21	PRKCE	rs114948639-T	0.0127	3E-16		0.1324896	[0.1-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46307068	46307069	rs34496377	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p21	NR	rs34496377-?	NR	5E-6		0.0444	[0.025-0.063] unit increase	Illumina [at least 560000] (imputed)	N
938	chr2	46309261	46309262	rs1868274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs1868274-G	0.349364	7E-12		0.016487664	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46313133	46313134	rs61758304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs61758304-A	0.033839	4E-9		0.03638243	[0.024-0.049] unit increase	Affymetrix [93095623] (imputed)	N
938	chr2	46315515	46315516	rs71422190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p21	PRKCE	rs71422190-G	0.0805	2E-39		0.08576571	[0.073-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46321093	46321094	rs12373805	21041247	Perlis RH	2010-11-01	Am J Psychiatry	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	2p21	intergenic	rs12373805-A	NR	9E-6		1.2169		Affymetrix [1922309] (imputed)	N
938	chr2	46328128	46328129	rs4953312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs4953312-C	0.273809	9E-14		0.02127561	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46332168	46332169	rs12712969	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p21	intergenic	rs12712969-?	NR	7E-6	(FEV1/FVC decline in non-asthmatics)	0.1472	[0.083-0.211] unit decrease	Illumina [~ 2500000] (imputed)	N
938	chr2	46346715	46346716	rs3768751	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	2p21	PRKCE	rs3768751-G	0.1796	2E-8	(Hemoglobin)	0.113	NR unit decrease	Affymetrix [305158]	N
938	chr2	46347605	46347606	rs4952800	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	2p21	PRKCE	rs4952800-A	NR	1E-6	(Asian)	0.0077	[0.0046-0.0108] unit decrease	NR [2500000] (imputed)	N
938	chr2	46349270	46349271	rs12623399	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p21	PRKCE	rs12623399-C	0.0586	1E-24		0.07733426	[0.063-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46352325	46352326	rs17799476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs17799476-G	0.183534	2E-33		0.04658774	[0.039-0.054] unit increase	Affymetrix [93095623] (imputed)	N
938	chr2	46352325	46352326	rs17799476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs17799476-G	0.183548	1E-53		0.05971719	[0.052-0.067] unit increase	Affymetrix [93095623] (imputed)	N
938	chr2	46352325	46352326	rs17799476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs17799476-G	0.183541	5E-88		0.0932961	[0.084-0.102] unit increase	Affymetrix [93095623] (imputed)	N
938	chr2	46352325	46352326	rs17799476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2p21	PRKCE	rs17799476-G	0.1818	2E-9		0.02782749	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46352325	46352326	rs17799476	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p21	PRKCE	rs17799476-G	0.1818	2E-10		0.02930298	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46352498	46352499	rs10495927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs10495927-G	0.296364	3E-13		0.031981956	[0.023-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46353165	46353166	rs10495928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p21		rs10495928-G	NR	8E-12		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
938	chr2	46353165	46353166	rs10495928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p21		rs10495928-G	NR	3E-216		0.0579	[0.054-0.061] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
938	chr2	46353165	46353166	rs10495928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs10495928-G	0.303835	1E-343				Affymetrix, Illumina [24653286] (imputed)	N
938	chr2	46353165	46353166	rs10495928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs10495928-G	0.305139	6E-376				Affymetrix, Illumina [24558453] (imputed)	N
938	chr2	46353165	46353166	rs10495928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2p21	PRKCE	rs10495928-G	0.336	1E-85		0.07334059	[0.066-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46353165	46353166	rs10495928	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p21	PRKCE	rs10495928-G	0.336	7E-95		0.07696009	[0.07-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46353165	46353166	rs10495928	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Red blood cell count	14,392 Japanese ancestry individuals	NA	2p21	PRKCE	rs10495928-G	0.17	4E-8		0.087	[0.056-0.118] unit decrease	Illumina [561583]	N
938	chr2	46353165	46353166	rs10495928	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	2p21	PRKCE	rs10495928-A	0.83	5E-6	(Hb)	0.032	[0.018-0.046] unit increase	Illumina [561583]	N
938	chr2	46353165	46353166	rs10495928	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	2p21	PRKCE	rs10495928-G	NR	7E-13		0.06	[0.05-0.08] g/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
938	chr2	46355050	46355051	rs4953318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p21		rs4953318-?	NR	4E-9				NR [~ 8900000] (imputed)	N
938	chr2	46355050	46355051	rs4953318	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	2p21	PRKCE	rs4953318-?	NR	1E-8				NR [2500000] (imputed)	N
938	chr2	46355050	46355051	rs4953318	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	2p21	PRKCE	rs4953318-?	NR	1E-19				NR [2500000] (imputed)	N
938	chr2	46355050	46355051	rs4953318	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2p21	PRKCE	rs4953318-A	0.62	3E-19	(EA, PCV)	0.152	[0.12-0.19] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
938	chr2	46355847	46355848	rs13008603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	15,134 African American or Afro-Caribbean and African ancestry individuals	NA	2p21	NR	rs13008603-C	0.839871	3E-9		0.093806	[0.063-0.125] SD units increase	Affymetrix, Illumina [36870619] (imputed)	N
938	chr2	46355847	46355848	rs13008603	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hematocrit	14,735 African American individuals, 6,762 African ancestry individuals, 21,684 Hispanic/Latino individuals	7,050 African American individuals	2p21	NR	rs13008603-A	NR	4E-7	(African)	0.068	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
938	chr2	46355847	46355848	rs13008603	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	2p21	PRKCE	rs13008603-?	NR	1E-20				Affymetrix, Illumina [2500000] (imputed)	N
938	chr2	46355847	46355848	rs13008603	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p21	PRKCE	rs13008603-A	0.0819	3E-9		0.03891043	[0.026-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46355847	46355848	rs13008603	23446634	Chen Z	2013-02-26	Hum Mol Genet	Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network.	Red blood cell traits	Up to 16,485 African American individuals	9,692 African American individuals, 21,020 European ancestry individuals, 14,088 Japanese ancestry individuals	2p21	PRKCE	rs13008603-A	0.163	4E-9	(Ht, AA)	0.277	[0.18-0.37] % decrease	Affymetrix, Illumina [NR]	N
938	chr2	46357132	46357133	rs17737768	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	2p21		rs17737768-C	NR	2E-7		13.118	[8.32-17.92] unit increase	Illumina [NR] (imputed)	N
938	chr2	46357132	46357133	rs17737768	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p21	PRKCE	rs17737768-C	0.668	7E-11		0.2621	[0.18-0.34] mmHg decrease	Affymetrix [NR] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p21		rs10168349-C	NR	1E-184		0.0557	[0.052-0.059] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	2p21		rs10168349-C	0.163038	4E-49		0.0621407	[0.054-0.07] unit decrease	Illumina [13479135] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p21		rs10168349-C	NR	8E-201		0.0545	[0.051-0.058] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	2p21		rs10168349-C	0.162966	1E-44		0.0580388	[0.05-0.066] unit decrease	Illumina [13478948] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2p21		rs10168349-C	0.16306	1E-52		0.0644262	[0.056-0.073] unit decrease	Illumina [13478961] (imputed)	N
938	chr2	46360906	46360907	rs10168349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2p21		rs10168349-C	NR	1E-9		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs10168349-C	0.335933	1E-117		0.08533392	[0.078-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs10168349-C	0.335957	2E-237		0.106778175	[0.1-0.11] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	PRKCE	rs10168349-C	0.335957	2E-168		0.105019264	[0.098-0.112] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs10168349-C	0.301368	1E-283				Affymetrix, Illumina [24332387] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p21	NR	rs10168349-C	0.335564	2E-236		0.064	[0.06-0.068] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	2p21	NR	rs10168349-G	0.838337	3E-50		0.073815	[0.064-0.084] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p21	NR	rs10168349-C	0.335571	3E-303		0.072482	[0.069-0.076] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	2p21	NR	rs10168349-G	0.838317	3E-48		0.072526	[0.063-0.082] SD units increase	Affymetrix, Illumina [16709126] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p21	NR	rs10168349-C	0.335592	9E-330		0.075569	[0.072-0.079] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	2p21	NR	rs10168349-G	0.837634	3E-53		0.077786	[0.068-0.088] SD units increase	Affymetrix, Illumina [16289021] (imputed)	N
938	chr2	46360906	46360907	rs10168349	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p21	PRKCE	rs10168349-C		2E-182		0.066	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
938	chr2	46360906	46360907	rs10168349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	2p21		rs10168349-?	NR	2E-12				NR [~ 8900000] (imputed)	N
938	chr2	46360906	46360907	rs10168349	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs10168349-?	NR	8E-205				NR [~ 8900000] (imputed)	N
938	chr2	46360906	46360907	rs10168349	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	2p21	PRKCE	rs10168349-?	NR	1E-36		0.07229	[0.061-0.084] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr2	46360906	46360907	rs10168349	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	2p21	PRKCE	rs10168349-?	NR	3E-32		0.06749	[0.056-0.079] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr2	46360906	46360907	rs10168349	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	2p21	PRKCE	rs10168349-?	NR	3E-39		0.07477	[0.064-0.086] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr2	46360906	46360907	rs10168349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p21	PRKCE	rs10168349-C	0.3309	4E-66		0.06419597	[0.057-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr2	46360906	46360907	rs10168349	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	2p21	PRKCE	rs10168349-G	0.83	5E-7	(Ht)	0.317	[0.193-0.44] unit increase	Illumina [561583]	N
938	chr2	46360906	46360907	rs10168349	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	2p21	PRKCE	rs10168349-C	NR	4E-15		0.19	[0.14-0.23] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
938	chr2	46363335	46363336	rs11690961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p21		rs11690961-C	NR	6E-16		0.0261	[0.02-0.032] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
938	chr2	46363335	46363336	rs11690961	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p21	PRKCE	rs11690961-C	0.8922	2E-17		0.3482	[0.27-0.43] mmHg increase	Affymetrix [NR] (imputed)	N
938	chr2	46363335	46363336	rs11690961	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p21	PRKCE	rs11690961-A	0.88	4E-12		0.34	[0.24-0.44] unit increase	Affymetrix [~ 9800000] (imputed)	N
938	chr2	46363335	46363336	rs11690961	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p21	PRKCE	rs11690961-A		1E-14		0.313	unit increase	Affymetrix [at least 2696785] (imputed)	N
938	chr2	46363698	46363699	rs6724315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	PRKCE	rs6724315-C	0.127071	2E-16		0.028663173	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
938	chr2	46370891	46370892	rs2053797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs2053797-A	0.178544	3E-11		0.024692928	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46372643	46372644	rs17034641	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2p21		rs17034641-A	NR	4E-16		0.08	[0.06-0.1] unit decrease	Illumina [110351653]	N
938	chr2	46372643	46372644	rs17034641	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2p21		rs17034641-A	NR	4E-17		0.23	[0.17-0.29] unit decrease	Illumina [110396782]	N
938	chr2	46372643	46372644	rs17034641	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	2p21	NR	rs17034641-A	NR	2E-7	(Hispanic/Latino)	0.073	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
938	chr2	46372643	46372644	rs17034641	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hematocrit	14,735 African American individuals, 6,762 African ancestry individuals, 21,684 Hispanic/Latino individuals	7,050 African American individuals	2p21	NR	rs17034641-A	NR	9E-9	(Hispanic/Latino)	0.08	NR unit decrease	Affymetrix, Illumina [up to 35800000] (imputed)	N
938	chr2	46372643	46372644	rs17034641	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hemoglobin	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	2p21	PRKCE	rs17034641-G	0.86	3E-8		0.12	[0.081-0.159] g/dL increase	Illumina [27801688] (imputed)	N
938	chr2	46372643	46372644	rs17034641	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hematocrit	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	2p21	PRKCE	rs17034641-G	0.86	3E-9		0.36	[0.24-0.48] % increase	Illumina [27801688] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	8,679 African American individuals, 17,412 Hispanic or Latin American individuals, 14,690 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	2p21		rs61523591-?	0.1601	1E-8		0.0225	[0.015-0.03] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red blood cell count	14,690 European ancestry individuals	NA	2p21		rs61523591-?	0.1463	8E-6		0.0266	[0.015-0.038] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	2p21		rs61523591-?	0.1463	4E-12		0.0781	[0.056-0.1] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	2p21		rs61523591-?	0.1459	1E-6		0.0774	[0.046-0.109] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	2p21		rs61523591-?	0.1601	4E-18		0.0696	[0.054-0.085] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	2p21		rs61523591-?	0.1463	2E-11		0.2237	[0.16-0.29] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	2p21		rs61523591-?	0.1459	7E-8		0.2471	[0.16-0.34] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	2p21		rs61523591-?	0.1601	7E-13		0.2117	[0.15-0.27] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372780	46372781	rs61523591	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals	NA	2p21		rs61523591-?	0.2072	7E-6		0.1999	[0.11-0.29] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
938	chr2	46372959	46372960	rs1020446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p21	PRKCE	rs1020446-C	0.0946630000000001	2E-12		0.02697368	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46372959	46372960	rs1020446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p21	PRKCE	rs1020446-C	0.0946709999999999	6E-11		0.024980206	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr2	46373442	46373443	rs72879760	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p21	PRKCE	rs72879760-T	0.0628	7E-6		1.923	[1.447-2.556]	Affymetrix, Illumina [14074516] (imputed)	N
939	chr2	46409006	46409007	rs72808780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs72808780-?	NR	2E-19				NR [~ 8900000] (imputed)	N
939	chr2	46409465	46409466	rs2594495	28002826	D'Adamo CR	2016-12-22	J Nutrigenet Nutrigenomics	The CAPN2/CAPN8 Locus on Chromosome 1q Is Associated with Variation in Serum Alpha-Carotene Concentrations.	Carotenoid levels (alpha-carotene)	433 Old Order Amish individuals	NA	2p21	PRKCE	rs2594495-A	0.04	1E-8		0.37	[0.25-0.49] ?mol/L increase	Affymetrix [2193082] (imputed)	N
939	chr2	46410312	46410313	rs11693321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21	PRKCE	rs11693321-C	0.239753	4E-13		0.019195404	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
939	chr2	46411206	46411207	rs281508	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	2p21	PRKCE	rs281508-?	NR	1E-6	(Recessive model)	0.77	unit increase	Illumina [542562]	N
939	chr2	46423446	46423447	rs11694459	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p21	Intergenic	rs11694459-?	NR	8E-6		2.2153301	[NR]	Affymetrix [492217] (imputed)	N
939	chr2	46429431	46429432	rs115180365	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs115180365-T	0.01394	1E-8	(CIITA)	0.4322	NR unit increase	Illumina [1671387] (imputed)	N
939	chr2	46460879	46460880	rs140838333	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	2p21	PRKCE, EPAS1	rs140838333-C	0.01	9E-7		0.3681	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
939	chr2	46484204	46484205	rs1374204	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	2p21	EPAS1	rs1374204-T	0.7	2E-29		0.0459	[0.038-0.054] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
939	chr2	46484309	46484310	rs17034876	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	2p21	NR	rs17034876-T	0.6916	3E-8		0.06759526	[0.044-0.091] z score increase	NR [1977400] (imputed)	N
939	chr2	46484309	46484310	rs17034876	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	2p21	NR	rs17034876-T	0.7	2E-28		0.046742693	[0.038-0.055] unit increase	NR [1977400] (imputed)	N
939	chr2	46484309	46484310	rs17034876	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	2p21	NR	rs17034876-T	0.65	1E-22		0.06357624	[0.051-0.076] unit increase	NR [1977400] (imputed)	N
939	chr2	46484309	46484310	rs17034876	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2p21	EPAS1	rs17034876-T	0.696083	1E-18		0.030115	[0.023-0.037] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
939	chr2	46484309	46484310	rs17034876	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2p21	EPAS1	rs17034876-T	0.700357	3E-47		0.042243	[0.037-0.048] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
939	chr2	46501269	46501270	rs116377985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs116377985-?	NR	2E-9				NR [~ 8900000] (imputed)	N
939	chr2	46509656	46509657	rs17802111	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	2p21	PRKCE, EPAS1, TCONS_00004241	rs17802111-C	0.37	1E-17		1.48	[1.35-1.62]	Illumina [792342]	N
939	chr2	46528613	46528614	rs2346418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p21		rs2346418-A	NR	4E-13		0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
939	chr2	46528695	46528695	rs146111768	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	EPAS1	rs146111768-A	0.446	1E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix [18391927] (imputed)	N
940	chr2	46533375	46533376	rs11894252	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p21	EPAS1	rs11894252-T	0.42	2E-12		0.45	[0.33-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
940	chr2	46533375	46533376	rs11894252	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	2p21	EPAS1	rs11894252-?	NR	9E-7		1.19	[1.12-1.26]	Illumina [~ 6000000] (imputed)	N
940	chr2	46533375	46533376	rs11894252	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	2p21	EPAS1	rs11894252-T	0.43	1E-9		0.52	[0.34-0.7] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
940	chr2	46533375	46533376	rs11894252	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	2p21	NR	rs11894252-?	0.49	3E-15		1.16	1.12-1.20	Illumina [7437091] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	9E-9	(-116 ms)	0.0328969	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	8E-9	(-114 ms)	0.0330373	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	6E-9	(-108 ms)	0.0325664	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	5E-8	(-104 ms)	0.0308075	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	3E-9	(-112 ms)	0.0338729	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	3E-8	(-120 ms)	0.0315389	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	2E-8	(-118 ms)	0.0321962	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	2E-8	(-106 ms)	0.0311158	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	1E-9	(-110 ms)	0.0342862	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p21	EPAS1	rs2121266-C	0.402282	1E-8	(-100 ms)	0.0318058	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
940	chr2	46535923	46535924	rs2121266	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	2p21	EPAS1	rs2121266-C	NR	2E-9		1.18	[1.12-1.25]	Illumina [~ 6000000] (imputed)	N
940	chr2	46537603	46537604	rs7579899	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma	3,227 European ancestry male cases, 4,916 European ancestry male controls	2,261 European ancestry male cases, 5,852 European ancestry male controls	2p21	EPAS1	rs7579899-?	NR	1E-6		1.19	[1.12-1.26]	Illumina [~ 6000000] (imputed)	N
940	chr2	46537603	46537604	rs7579899	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	2p21	NR	rs7579899-?	0.49	5E-15		1.15	1.11-1.20	Illumina [7437091] (imputed)	N
940	chr2	46537603	46537604	rs7579899	21131975	Purdue MP	2010-12-05	Nat Genet	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	2p21	EPAS1	rs7579899-?	0.40	2E-9		1.15	[1.10-1.21]	Illumina [586069]	N
940	chr2	46541175	46541176	rs11689011	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p21	EPAS1	rs11689011-T	0.4155	2E-11		0.4488	[0.32-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
940	chr2	46541175	46541176	rs11689011	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	2p21	EPAS1	rs11689011-T	0.42	1E-10	(EA)	0.6	[0.42-0.78] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
940	chr2	46550768	46550769	rs7582701	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p21	NR	rs7582701-C	0.037394344593387	4E-6	(IGP74)	0.4338	[0.25-0.62] unit decrease	Illumina [~ 2500000] (imputed)	N
940	chr2	46550768	46550769	rs7582701	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p21	NR	rs7582701-C	0.0373370440481498	1E-6	(IGP69)	0.4547	[0.27-0.64] unit decrease	Illumina [~ 2500000] (imputed)	N
940	chr2	46550768	46550769	rs7582701	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p21	NR	rs7582701-C	0.0373185578689255	2E-6	(IGP75)	0.4488	[0.27-0.63] unit decrease	Illumina [~ 2500000] (imputed)	N
940	chr2	46550768	46550769	rs7582701	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p21	NR	rs7582701-C	0.0372783807743658	4E-6	(IGP76)	0.4309	[0.25-0.61] unit increase	Illumina [~ 2500000] (imputed)	N
940	chr2	46552600	46552601	rs4953345	25826619	Henrion MY	2015-03-31	PLoS One	Common variation at 1q24.1 (ALDH9A1) is a potential risk factor for renal cancer.	Renal cell carcinoma	2,215 Western European ancestry cases, 8,566 Western European ancestry controls	2,844 European ancestry cases, 7,270 European ancestry controls	2p21	EPAS1	rs4953345-A	NR	5E-10	(Western European)	1.25	[1.17-1.33]	Illumina [up to 12182133] (imputed)	N
940	chr2	46554532	46554533	rs11125071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs11125071-?	NR	1E-9				NR [~ 8900000] (imputed)	N
940	chr2	46558207	46558208	rs4953346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	EPAS1	rs4953346-G	0.460241	2E-11		0.014898218	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
940	chr2	46558431	46558432	rs4953348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21	EPAS1	rs4953348-G	0.460644	7E-10		0.013653652	[0.0093-0.018] unit increase	Affymetrix [93095623] (imputed)	N
940	chr2	46567275	46567276	rs4953353	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2p21	EPAS1	rs4953353-G	0.631578	3E-11		0.017903	[0.013-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
940	chr2	46576893	46576894	rs2881324	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2p21	EPAS1	rs2881324-G	0.1	8E-7	(Upper lip height)	0.355	[NR] unit increase	Affymetrix [311944]	N
940	chr2	46576893	46576894	rs2881324	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Facial morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2p21	EPAS1	rs2881324-G	0.1	3E-7	(Lower facial area)	62.7	[NR] unit increase	Affymetrix [311944]	N
940	chr2	46584858	46584859	rs372272284	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Oxygenated hemoglobin levels	920 Tibetan ancestry individuals	NA	2p21	EPAS1	rs372272284-G	0.752	6E-9		0.386	[NR] g/dL decrease	Illumina [3507568] (imputed)	N
940	chr2	46584858	46584859	rs372272284	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Hemoglobin levels	921 Tibetan ancestry individuals	NA	2p21	EPAS1	rs372272284-G	0.752	8E-8	(Hb)	0.396	[NR] g/dL decrease	Illumina [3507568] (imputed)	N
940	chr2	46600029	46600030	rs116611511	28373541	Yang J	2017-04-03	Proc Natl Acad Sci U S A	Genetic signatures of high-altitude adaptation in Tibetans.	High altitude adaptation	3,008 Tibetan (founder/genetic isolate) individuals and 7,287 East Asian individuals	NA	2p21	EPAS1	rs116611511-G	0.003	4E-19				Illumina [7300000] (imputed)	N
940	chr2	46625887	46625888	rs10208098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21	AC016912.3	rs10208098-C	0.00827699999999998	1E-9		0.07413493	[0.05-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr2	46634644	46634645	rs12623288	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2p21	AC016912.4	rs12623288-A	NR	3E-6				Illumina [~ 1000000] (imputed)	N
940	chr2	46637363	46637364	rs1447563	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Peak velocity of the mitral A-wave	21,852 European ancestry individuals	14,787 European ancestry individuals	2p21	EPAS1	rs1447563-C	0.47	3E-7		0.586	[0.36-0.81] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
940	chr2	46642248	46642249	rs2346177	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	HDL cholesterol	7,813 African American individuals	4,323 African American and Afro-Caribbean individuals	2p21	intergenic	rs2346177-A	0.49	2E-6		0.0728	[0.043-0.102] unit increase	Affymetrix [~ 2740000] (imputed)	N
941	chr2	46732404	46732405	rs11125080	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p21	ATP6V1E2	rs11125080-G	0.1689	8E-6	(African)			Illumina [4404269] (imputed)	N
941	chr2	46732404	46732405	rs11125080	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade error rate in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	2p21	ATP6V1E2	rs11125080-?	NR	2E-7	(African)			Illumina [4404269] (imputed)	N
941	chr2	46735422	46735423	rs17817004	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p21	EPAS1, ATP6V1E2	rs17817004-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
942	chr2	46814636	46814637	rs6719813	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p21	NR	rs6719813-?	NR	3E-8	(cerebellar vermal lobules I V)			NR [9227495] (imputed)	N
942	chr2	46818991	46818992	rs17818315	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p21	ATP6V1E2, RHOQ, PIGF, CRIPT	rs17818315-?		5E-8				NR [7428630] (imputed)	N
942	chr2	46826025	46826026	rs17818399	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	2p21	PIGF, CRIPT	rs17818399-C	0.17	3E-7		1.13	[0.70-1.56] cm increase	Affymetrix [2073674] (imputed)	N
942	chr2	46843630	46843631	rs1531133	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2p21	PIGF:CRIPT	rs1531133-A	NR	3E-8		0.00709157	[0.0046-0.0096] unit decrease	Affymetrix [10061374] (imputed)	N
942	chr2	46863871	46863872	rs6544906	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p21	CRIPT, SOCS5	rs6544906-A	0.5616	6E-10		1.0235735		Affymetrix [11880941] (imputed)	N
942	chr2	46878608	46878609	rs17035437	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p21	NR	rs17035437-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
942	chr2	46884823	46884824	rs113019802	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p21	NR	rs113019802-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
942	chr2	46886141	46886142	rs4953404	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	2p21	CRIPT, SOCS5	rs4953404-G	0.72	8E-7	(Days drinks/week)	0.006	[-0.01164-0.02364] unit increase	Affymetrix [2500000] (imputed)	N
942	chr2	46886141	46886142	rs4953404	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Pulse pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	2p21	CRIPT, SOCS5	rs4953404-G	0.72	1E-6	(Oz alcohol/week)	0.001	[-0.01076-0.01276] unit increase	Affymetrix [2500000] (imputed)	N
942	chr2	46888199	46888200	rs184413120	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2p21	NR	rs184413120-?	NR	6E-6		1.05603	[0.6-1.51] unit decrease	NR [13958389] (imputed)	N
942	chr2	46888507	46888508	rs146679300	34067580	Kim HR	2021-05-17	Genes (Basel)	A Genome-Wide Association Study for Hypertensive Kidney Disease in Korean Men.	Hypertensive renal disease	310 Korean ancestry male cases, 2,294 Korean ancestry male controls	43 Korean ancestry male cases, 636 Korean ancestry male controls	2p21	NR	rs146679300-A	0.032	2E-6		2.54	[1.74 - 3.72]	Affymetrix [NR] (imputed)	N
942	chr2	46901044	46901045	rs4267554	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	2p21	CRIPT, SOCS5	rs4267554-G	0.127	2E-6		0.042	[0.024-0.06] unit decrease	Illumina [7358575] (imputed)	N
942	chr2	46909808	46909809	rs62136933	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	intergenic	rs62136933-A	0.1842	9E-32		0.0285	[0.024-0.033] unit increase	Affymetrix [18391927] (imputed)	N
942	chr2	46918664	46918665	rs7596521	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2p21	SOCS5	rs7596521-G	0.27136899999999997	6E-10		0.021185	[0.014-0.028] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
942	chr2	46921284	46921285	rs12474201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p21	NR	rs12474201-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
942	chr2	46921284	46921285	rs12474201	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p21	SOCS5	rs12474201-A	0.35	3E-13		0.028	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
943	chr2	46925729	46925730	rs4952842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p21		rs4952842-A	NR	1E-28		0.0172	[0.014-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
943	chr2	46925788	46925789	rs3829835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs3829835-?	NR	5E-53				NR [~ 8900000] (imputed)	N
943	chr2	46965009	46965010	rs34186074	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p21	SOCS5	rs34186074-C	NR	2E-8		0.0164585	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
943	chr2	46965009	46965010	rs34186074	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p21	SOCS5	rs34186074-T	0.6373	1E-8		0.041	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
943	chr2	46976216	46976217	rs7562173	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p21	SOCS5	rs7562173-C	0.375222	2E-6	(females)	0.01418	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
943	chr2	46976216	46976217	rs7562173	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p21	SOCS5	rs7562173-C	0.375222	1E-11	(females)	0.01747	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
943	chr2	47002225	47002226	rs35722922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p21		rs35722922-G	NR	4E-12		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
943	chr2	47014521	47014522	rs34606703	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p21	NA	rs34606703-A	0.3585	5E-15		0.0155	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
943	chr2	47016469	47016470	rs12615264	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	2p21	SOCS5	rs12615264-T	0.03	3E-6		0.644	unit increase	Illumina [~ 6300000] (imputed)	N
943	chr2	47019520	47019521	rs35809007	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p21	LINC01118	rs35809007-G	0.636705	1E-13		0.0105922	[0.0078-0.0134] unit increase	Affymetrix [12370749]	N
943	chr2	47019520	47019521	rs35809007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p21	NR	rs35809007-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
943	chr2	47019520	47019521	rs35809007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p21		rs35809007-?	NR	4E-17				NR [~ 8900000] (imputed)	N
943	chr2	47019520	47019521	rs35809007	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p21	NA	rs35809007-A	0.3634	9E-16		0.0159	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
943	chr2	47022542	47022543	rs76351433	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	2p21	SOCS5	rs76351433-C	0.04	2E-7		0.692	unit increase	Illumina [~ 6300000] (imputed)	N
943	chr2	47030362	47030363	rs17773190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p21		rs17773190-G	0.482696	3E-17		0.018779678	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
943	chr2	47030362	47030363	rs17773190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p21		rs17773190-G	0.482717	2E-21		0.021149505	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
943	chr2	47030362	47030363	rs17773190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p21		rs17773190-G	0.482708	3E-23		0.022098571	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
943	chr2	47030362	47030363	rs17773190	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p21	intergenic	rs17773190-G		2E-20		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
943	chr2	47030362	47030363	rs17773190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p21		rs17773190-?	NR	3E-16				NR [~ 8900000] (imputed)	N
943	chr2	47030362	47030363	rs17773190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2p21	intergenic	rs17773190-G	0.4839	4E-11		0.02370633	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
943	chr2	47030362	47030363	rs17773190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2p21	intergenic	rs17773190-G	0.4839	6E-11		0.02347781	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
943	chr2	47045308	47045309	rs2289933	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p21	NR	rs2289933-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
944	chr2	47102172	47102173	rs17035813	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs17035813-A	0.01742	2E-10	(ACSL4)	0.1117	NR unit increase	Illumina [1671387] (imputed)	N
944	chr2	47107331	47107332	rs7560018	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	2p21	NR	rs7560018-A	NR	6E-6	(phenotype 2)	1.71	[NR]	Illumina [> 8000000] (imputed)	N
944	chr2	47125913	47125914	rs7574514	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	2p21		rs7574514-G	0.121944	7E-7		1.3255566	NR	Affymetrix [7846216] (imputed)	N
944	chr2	47126345	47126346	rs11125102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p21	AC016722.4	rs11125102-T	0.362522	6E-10		0.014678936	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
944	chr2	47126345	47126346	rs11125102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p21	NR	rs11125102-T	0.370972	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
944	chr2	47126345	47126346	rs11125102	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p21	NR	rs11125102-T	0.360474	2E-14		0.014826	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
944	chr2	47139018	47139019	rs10181411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p21	MCFD2	rs10181411-C	0.044963	2E-9		0.03266942	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
944	chr2	47147373	47147374	rs1446499	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	2p21	NR	rs1446499-C		8E-6		0.1802	[0.1-0.26] SD units decrease	NR [10700000] (imputed)	N
944	chr2	47150374	47150381	rs563873643	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p21	MCFD2, TTC7A	rs563873643-CCATTAGT	0.9982	6E-6		0.6018	[0.34-0.86] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
944	chr2	47152290	47152291	rs6419615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p21		rs6419615-C	NR	2E-11		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
944	chr2	47155598	47155599	rs761493714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p21	MCFD2, TTC7A	rs761493714-A	0.9939	4E-6		0.4021	[0.23-0.57] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
945	chr2	47225890	47225891	rs736377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p21	NR	rs736377-T	NR	2E-9		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
945	chr2	47229838	47229839	rs17540621	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2p21	TTC7A, MCFD2, FLJ40172	rs17540621-C	0.06	2E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
945	chr2	47231673	47231674	rs10779934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p21		rs10779934-A	NR	1E-9		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
945	chr2	47236435	47236436	rs61571577	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p21	NR	rs61571577-?	NR	5E-7	(Latino)	1.1768	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
945	chr2	47238227	47238228	rs77652838	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	2p21	NR	rs77652838-T		4E-6		0.6578	[0.38-0.94] unit increase	Illumina [12759548] (imputed)	N
945	chr2	47238529	47238530	rs114276698	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	2p21		rs114276698-?	NR	2E-8		0.110814	[0.068-0.153] unit increase	NR [9800000] (imputed)	N
945	chr2	47240011	47240012	rs10194115	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p21	TTC7A	rs10194115-?	0.07	5E-7		9.0	[NR]	Affymetrix [512497]	N
945	chr2	47268697	47268698	rs13353361	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p21	TTC7A	rs13353361-G	0.1619	5E-6	(African)			Illumina [4404269] (imputed)	N
945	chr2	47283501	47283502	rs2949785	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p21	NR	rs2949785-C	0.228	3E-9		0.017654141	[0.012-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
945	chr2	47283556	47283557	rs2436772	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p21	TTC7A	rs2436772-A	0.2092	1E-15		0.019	[0.014-0.024] unit increase	Affymetrix [18391927] (imputed)	N
945	chr2	47286758	47286759	rs13393256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs13393256-?	NR	4E-15				NR [~ 8900000] (imputed)	N
945	chr2	47290536	47290537	rs2692219	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p21	NR	rs2692219-A	0.745078	2E-10		0.0498793	[0.035-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
946	chr2	47399063	47399064	rs815815	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p21	CALM2	rs815815-?	0.19	7E-7		1.51	[1.28-1.77]	Affymetrix [832357]	N
946	chr2	47401220	47401221	rs72810438	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2p21	NR	rs72810438-?	NR	1E-5		0.963384	[0.54-1.39] unit increase	NR [13958389] (imputed)	N
946	chr2	47412339	47412340	rs1723480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p21		rs1723480-?	NR	8E-9				NR [~ 8900000] (imputed)	N
947	chr2	47464098	47464099	rs6761941	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p21	NR	rs6761941-T	0.05052	9E-9	(C9orf64)	0.002944	NR unit decrease	Illumina [1671387] (imputed)	N
947	chr2	47476134	47476135	rs12620038	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	2p21	intergenic	rs12620038-?	NR	1E-6		1.3888888	[1.22-1.59]	NR [7738399] (imputed)	N
947	chr2	47479565	47479566	rs13002630	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	2p21	LOC101927043	rs13002630-T	0.707	3E-8		0.028	[0.018-0.038] SD units increase	NR [9926106] (imputed)	N
947	chr2	47481640	47481641	rs10190105	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p21	NR	rs10190105-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
947	chr2	47504999	47505000	rs79221481	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	2p21	NR	rs79221481-T	0.03	3E-6		1.39	[1.21-1.60]	Illumina [~ 1072558] (imputed)	N
948	chr2	47612301	47612302	rs201314303	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	epithelial cell adhesion molecule levels	up to 653 individuals	up to 317 individuals	2p21	EPCAM	rs201314303-G	0.0088746	7E-16		2.48	[1.87-3.09] unit decrease	Illumina [4840842] (imputed)	N
948	chr2	47616453	47616454	rs201308575	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2p21	EPCAM	rs201308575-T	0.099	2E-6		0.512	[0.389 - 0.674]	Illumina [5398302] (imputed)	N
948	chr2	47670253	47670254	rs186552003	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p21	Intergenic	rs186552003-A	NR	8E-7	(within families)	4.943	unit increase	Affymetrix [up to 15107142] (imputed)	N
948	chr2	47679977	47679978	rs10514805	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	2p21	MSH2	rs10514805-?	NR	7E-6	(Alpha power, Cz)	0.172	[0.098-0.246] unit increase	Illumina [527829]	N
948	chr2	47686531	47686532	rs147620864	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p21	MSH2	rs147620864-G	0.998	5E-6	(AA)	0.315	unit increase	Illumina [NR] (imputed)	N
949	chr2	47763018	47763019	rs7580217	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Parabacteroides abundance in stool	5,959 Finnish ancestry individuals	NA	2p16.3		rs7580217-C	0.163215	3E-8		0.104204	[0.067-0.141] unit decrease	Illumina [7980478] (imputed)	N
950	chr2	47844504	47844505	rs6544997	19890347	Birlea SA	2009-11-05	J Invest Dermatol	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	2p16.3	KCNK12	rs6544997-?	0.47	7E-6				Illumina [297342]	N
950	chr2	47856864	47856865	rs533114607	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.3	AC138655.1	rs533114607-A	0.0013	9E-6		1.2985	[0.73-1.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
950	chr2	47880933	47880934	rs1214776	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	2p16.3		rs1214776-?	NR	7E-7		0.8079		NR [577656]	N
950	chr2	47885475	47885476	rs2969775	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis in Alzheimer's disease	1,039 European ancestry cases with psychosis, 610 European ancestry cases without psychosis, 260 European, African American and Native American ancestry cases with psychosis and 125 European, African American and Native American ancestry cases without psychosis from 264 families	NA	2p16.3	AC079250.1	rs2969775-?	0.63	2E-6		1.4705882	[NR]	Illumina [1882172] (imputed)	N
950	chr2	47893587	47893588	rs2037231	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2p16.3	NR	rs2037231-A	0.0755198	5E-8		0.0686955	[0.043-0.094] unit decrease	Affymetrix [17914406] (imputed)	N
950	chr2	47901293	47901294	rs150886752	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2p16.3	intergenic	rs150886752-T	0.017	3E-9	(YKL-40)	40.299	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
950	chr2	47904095	47904096	rs7603494	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	2p16.3	LOC100131554, MSH6	rs7603494-?	0.5	2E-7	(Turkish)	1.6129031	[1.35-1.92]	Illumina [up to 547389]	N
950	chr2	47956818	47956819	rs2098242	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder)	30 African American cases, 45 European ancestry cases, 17 Hispanic cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	2p16.3	intergenic	rs2098242-T		8E-6		3.179	[NR]	Affymetrix [NR]	N
950	chr2	47958630	47958631	rs114278367	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	2p16.3	MSH6	rs114278367-A	0.9752	8E-7		0.0246	[0.015-0.034] unit increase	Affymetrix [~ 7740000] (imputed)	N
951	chr2	48005820	48005821	rs76928871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2p16.3		rs76928871-?	NR	3E-11				NR [~ 8900000] (imputed)	N
951	chr2	48009815	48009816	rs3136228	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p16.3	NR	rs3136228-G	0.347	5E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
951	chr2	48013098	48013099	rs3136247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p16.3		rs3136247-?	NR	3E-12				NR [~ 8900000] (imputed)	N
951	chr2	48016895	48016896	rs3136272	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.3	MSH6	rs3136272-T	0.366	2E-9		0.0074	[0.005-0.0098] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
951	chr2	48018080	48018081	rs1800932	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	2p16.3	MSH6	rs1800932-A	0.81	3E-11		0.17	[0.11-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
951	chr2	48021378	48021379	rs3136302	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.3	MSH6	rs3136302-G	0.449072	6E-9		0.0107039	[0.0071-0.0143] unit decrease	NR [13737936] (imputed)	N
951	chr2	48021378	48021379	rs3136302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.3		rs3136302-?	NR	4E-10				NR [~ 8900000] (imputed)	N
951	chr2	48022687	48022688	rs111861797	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p16.3	NR	rs111861797-T	0.806683	3E-13		0.0115251	[0.0083-0.0147] unit increase	Affymetrix [16578495] (imputed)	N
951	chr2	48031371	48031372	rs3136354	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p16.3	NR	rs3136354-C	0.500744	4E-18		0.0236592	[0.018-0.029] unit increase	Affymetrix [16580851] (imputed)	N
951	chr2	48032612	48032613	rs7562367	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.3		rs7562367-G	0.329	1E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
951	chr2	48043980	48043981	rs72809593	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p16.3	FBXO11	rs72809593-T	NR	7E-6		0.0642236	[0.036-0.092] unit decrease	Illumina [13519193] (imputed)	N
951	chr2	48043980	48043981	rs72809593	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2p16.3	FBXO11	rs72809593-T	NR	4E-7		0.0772731	[0.048-0.107] unit decrease	Illumina [13520550] (imputed)	N
951	chr2	48047334	48047335	rs4381823	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	2p16.3	FBXO11	rs4381823-?	0.93	6E-6	(EA)	1.43	[NR]	NR [1085772] (imputed)	N
951	chr2	48062782	48062783	rs1875407	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.3	FBXO11	rs1875407-T	0.3812	8E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
951	chr2	48070043	48070044	rs7568939	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2p16.3	NR	rs7568939-T	0.0203	5E-6		0.5003	[0.29-0.71] unit increase	Illumina [7305641] (imputed)	N
952	chr2	48116125	48116126	rs4952896	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.3	NR	rs4952896-A	0.74	8E-11		0.00799571	[0.0056-0.0104] unit decrease	NR [9732723] (imputed)	N
952	chr2	48138791	48138792	rs138417126	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	2p16.3	NR	rs138417126-G	NR	9E-6				NR [NR] (imputed)	N
952	chr2	48138791	48138792	rs138417126	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	2p16.3	NR	rs138417126-G	NR	9E-6				NR [NR] (imputed)	N
952	chr2	48150586	48150587	rs7588761	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p16.3	FBXO11	rs7588761-T	0.07	5E-9		0.75	[0.5-1] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
952	chr2	48150586	48150587	rs7588761	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p16.3	FBXO11	rs7588761-T	0.0667	7E-8		0.727	[0.46-0.99] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
952	chr2	48169381	48169382	rs34198350	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p16.3	NR	rs34198350-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
952	chr2	48175337	48175338	rs12105167	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	2p16.3	FBXO11	rs12105167-?		3E-6		0.127	[0.074-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
952	chr2	48178901	48178902	rs149957269	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.3	NR	rs149957269-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
952	chr2	48198144	48198145	rs72811546	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2p16.3	Intergenic	rs72811546-T	NR	4E-7		0.0773778	[0.048-0.107] unit increase	Illumina [13520550] (imputed)	N
952	chr2	48206078	48206079	rs79939438	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	2p16.3	AC092650.1	rs79939438-T	NR	4E-6	(adjusted for clinical variables)			Illumina [up to 3935887] (imputed)	N
952	chr2	48214216	48214217	rs62141276	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	2p16.3	AC079807.4	rs62141276-G	0.367	3E-9		5.917921	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
952	chr2	48220335	48220336	rs17396122	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.3	NR	rs17396122-G	NR	1E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
952	chr2	48230827	48230828	rs77348447	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	2p16.3	LOC105374591	rs77348447-?		2E-7				Illumina [7405822] (imputed)	N
952	chr2	48230827	48230828	rs77348447	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	2p16.3	LOC105374591	rs77348447-?		5E-6				Illumina [7405822] (imputed)	N
953	chr2	48252310	48252311	rs17396357	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.3	FBXO11, FOXN2	rs17396357-T	0.3818	2E-8		1.0213242		Affymetrix [11880941] (imputed)	N
953	chr2	48274590	48274592	rs386645843	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	2p16.3	FBXO11	rs386645843-?		2E-16	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
953	chr2	48274590	48274591	rs62135450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p16.3		rs62135450-T	NR	4E-15		0.0181	[0.014-0.023] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
953	chr2	48274591	48274592	rs72816437	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2p16.3	FBXO11, FOXN2	rs72816437-T	0.39	5E-12		6.91	z-score increase	Affymetrix [4314223] (imputed)	N
953	chr2	48277489	48277490	rs7601767	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	2p16.3		rs7601767-A	0.39	2E-7				NR [13131314] (imputed)	N
953	chr2	48277489	48277490	rs7601767	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.3		rs7601767-A	0.39	8E-138		24.99	z score increase	Affymetrix [9061022] (imputed)	N
953	chr2	48277489	48277490	rs7601767	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	2p16.3		rs7601767-A	0.39	1E-6				NR [13131314] (imputed)	N
953	chr2	48277489	48277490	rs7601767	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.3		rs7601767-A	0.39	7E-65		17.01	z score increase	Affymetrix [9061022] (imputed)	N
953	chr2	48277489	48277490	rs7601767	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.3	NR	rs7601767-A	0.3764	1E-17				NR [9056863] (imputed)	N
953	chr2	48277489	48277490	rs7601767	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p16.3		rs7601767-?	NR	3E-35				NR [9705931] (imputed)	N
953	chr2	48277489	48277490	rs7601767	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p16.3	TBX15, WARS2	rs7601767-?		5E-13				NR [7428630] (imputed)	N
953	chr2	48277489	48277490	rs7601767	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p16.3	NR	rs7601767-?		4E-12				NR [7428630] (imputed)	N
953	chr2	48277489	48277490	rs7601767	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p16.3	NR	rs7601767-A	0.3697	6E-15	(Superior Temporal)	15.552154	[11.65-19.46] unit increase	Affymetrix, Illumina [NR]	N
953	chr2	48281137	48281138	rs7563432	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.3		rs7563432-A	0.38	3E-58		16.09	z score increase	Affymetrix [9061022] (imputed)	N
953	chr2	48281137	48281138	rs7563432	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.3	NR	rs7563432-A	0.3761	1E-17				NR [9056863] (imputed)	N
953	chr2	48283778	48283779	rs11531378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p16.3		rs11531378-C	NR	1E-15		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
953	chr2	48283918	48283919	rs4309622	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2p16.3	FBXO11, FOXN2	rs4309622-?	NR	5E-10		0.4136	[0.27-0.55] unit increase	Affymetrix [11100000] (imputed)	N
953	chr2	48293583	48293584	rs12475184	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p16.3	FBXO11	rs12475184-?		6E-9				Affymetrix, Illumina [NR] (imputed)	N
953	chr2	48298990	48298991	rs11689818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p16.3	NR	rs11689818-G	NR	2E-9		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
953	chr2	48314489	48314490	rs6740430	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2p16.3	NR	rs6740430-A	NR	4E-6		0.01049	[0.006-0.015] unit decrease	Illumina [~ 540852]	N
953	chr2	48314622	48314623	rs72816448	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p16.3	FBXO11, FOXN2	rs72816448-G	0.977	8E-8		0.0707957	[0.045-0.097] unit decrease	Illumina [13519193] (imputed)	N
953	chr2	48314622	48314623	rs72816448	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p16.3	FBXO11, FOXN2	rs72816448-G	0.977	2E-7		0.0628544	[0.039-0.086] unit decrease	Illumina [13520550] (imputed)	N
953	chr2	48314622	48314623	rs72816448	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2p16.3	FBXO11, FOXN2	rs72816448-G	0.977	3E-8		0.0776957	[0.05-0.105] unit decrease	Illumina [13520550] (imputed)	N
953	chr2	48323918	48323919	rs6720027	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p16.3	NR	rs6720027-T	NR	4E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
953	chr2	48347731	48347732	rs4953549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.3		rs4953549-?	NR	3E-11				NR [~ 8900000] (imputed)	N
953	chr2	48352342	48352343	rs75733466	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	2p16.3	NR	rs75733466-?		5E-6		1.89	[NR]	Illumina [NR] (imputed)	N
954	chr2	48380717	48380718	rs12475492	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	2p16.3	FOXN2	rs12475492-G	NR	6E-9		1.09	[1.07-1.11]	Affymetrix [up to 49134253] (imputed)	N
954	chr2	48402507	48402507	rs60731914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p16.3		rs60731914-CCATGTGGTTTTT	NR	1E-8		0.0151	[0.0098-0.0204] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
954	chr2	48404098	48404099	rs973894	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2p16.3	FOXN2	rs973894-C	0.2794	6E-8		0.0061	[0.0039-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
954	chr2	48414734	48414735	rs12621844	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	2p16.3	FOXN2	rs12621844-T	0.5999	2E-8		0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
954	chr2	48418318	48418319	rs141623444	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p16.3	Intergenic	rs141623444-G	NR	6E-7		0.0673443	[0.041-0.094] unit increase	Illumina [13519193] (imputed)	N
954	chr2	48418318	48418319	rs141623444	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p16.3	Intergenic	rs141623444-G	NR	2E-6		0.0585454	[0.034-0.083] unit increase	Illumina [13520550] (imputed)	N
954	chr2	48418318	48418319	rs141623444	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2p16.3	Intergenic	rs141623444-G	NR	2E-7		0.0743815	[0.046-0.102] unit increase	Illumina [13520550] (imputed)	N
954	chr2	48462923	48462924	rs11125166	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p16.3	NR	rs11125166-C	0.731	9E-10		0.0091545	[0.0062-0.0121] unit decrease	NR [~ 9732723] (imputed)	N
954	chr2	48484466	48484467	rs12713007	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p16.3	FOXN2	rs12713007-C	0.499372	2E-8		0.0107042	[0.007-0.0144] unit increase	Affymetrix [NR] (imputed)	N
955	chr2	48503560	48503561	rs12713008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.3	Intergenic	rs12713008-A	0.4548	3E-10	(MTAG)	0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
955	chr2	48503560	48503561	rs12713008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.3	Intergenic	rs12713008-G	0.5452	2E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
955	chr2	48518778	48518779	rs189454452	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p16.3	Intergenic	rs189454452-C	NR	9E-6		0.0607934	[0.034-0.088] unit decrease	Illumina [13519193] (imputed)	N
955	chr2	48541043	48541044	rs4290706	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2p16.3	FOXN2	rs4290706-T	0.521989	2E-13		0.00274849	[0.002-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
955	chr2	48573894	48573895	rs79073127	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.3	FOXN2	rs79073127-C	0.1227	3E-15		0.0226	[0.017-0.028] unit decrease	Affymetrix [18391927] (imputed)	N
955	chr2	48574163	48574164	rs62137009	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p16.3	FOXN2	rs62137009-T	0.61304	3E-30		0.00587024	[0.0048-0.0069] unit increase	Affymetrix [13995440] (imputed)	N
955	chr2	48584574	48584575	rs11690748	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p16.3	NR	rs11690748-C	0.62288	7E-15		0.00621882	[0.0045-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
955	chr2	48584574	48584575	rs11690748	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p16.3	NR	rs11690748-C	0.62271	1E-10		0.00793428	[0.0055-0.0104] unit increase	Affymetrix [16585854] (imputed)	N
955	chr2	48584574	48584575	rs11690748	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p16.3	NR	rs11690748-C	0.62288	3E-9		0.005379	[0.0035-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
955	chr2	48584574	48584575	rs11690748	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p16.3	NR	rs11690748-C	0.62271	1E-6		0.00724346	[0.0044-0.0101] unit increase	Affymetrix [16585866] (imputed)	N
955	chr2	48587197	48587198	rs17037289	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2p16.3	FOXN2	rs17037289-A	0.7494	2E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
955	chr2	48587962	48587963	rs76154567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p16.3		rs76154567-T	NR	3E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
955	chr2	48587962	48587963	rs76154567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.3		rs76154567-?	NR	2E-12				NR [~ 8900000] (imputed)	N
955	chr2	48602251	48602252	rs17855177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p16.3		rs17855177-?	NR	3E-14				NR [~ 8900000] (imputed)	N
955	chr2	48624006	48624007	rs4953572	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	2p16.3	FOXN2	rs4953572-A	0.6615	2E-11		1.0206641	[NR]	Illumina [12493444] (imputed)	N
956	chr2	48633010	48633011	rs10208627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p16.3		rs10208627-G	NR	3E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
956	chr2	48640692	48640693	rs72820455	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.3	NR	rs72820455-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
956	chr2	48640999	48641000	rs144452299	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2p16.3	PPP1R21	rs144452299-?		5E-6				Illumina [2668805]	N
956	chr2	48641584	48641585	rs13429377	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p16.3		rs13429377-C	NR	3E-22		0.0183	[0.015-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
956	chr2	48642540	48642541	rs6749773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p16.3		rs6749773-A	NR	1E-13		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
956	chr2	48642540	48642541	rs6749773	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p16.3	PPP1R21	rs6749773-G	0.533637	1E-15		0.00170372	[0.0012-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
956	chr2	48642540	48642541	rs6749773	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p16.3	FOXN2, PPP1R21	rs6749773-G	0.53	4E-9		5.9	z-score increase	Affymetrix [4311822] (imputed)	N
956	chr2	48643435	48643436	rs4606978	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.3	Intergenic	rs4606978-A	0.6786	1E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr2	48643435	48643436	rs4606978	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs4606978-A	0.6731	4E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr2	48646398	48646399	rs10454142	22829776	Coviello AD	2012-07-19	PLoS Genet	A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.	Sex hormone-binding globulin levels	21,791 European ancestry individuals	8,175 European ancestry individuals	2p16.3	LHCGR	rs10454142-T	0.69	1E-7	(Men + Women)	0.023	[0.014-0.032] umol/L increase	Affymetrix, Illumina [2543887] (imputed)	N
956	chr2	48646567	48646568	rs192224341	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p16.3	NR	rs192224341-?	NR	5E-9				Illumina [7760689] (imputed)	N
956	chr2	48649704	48649705	rs7565792	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2p16.3	NR	rs7565792-C	NR	7E-6	(5 degree of freedom test)	1.03	[1.00-1.06]	NR [1252901] (imputed)	N
956	chr2	48656093	48656094	rs112477875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p16.3		rs112477875-G	0.120237	3E-10		0.02159901	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr2	48656093	48656094	rs112477875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p16.3		rs112477875-G	0.120247	1E-9		0.020819413	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr2	48663036	48663037	rs186166314	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p16.3	Intergenic	rs186166314-A	NR	9E-8	(between families)	5.355	unit decrease	Affymetrix [up to 15107142] (imputed)	N
956	chr2	48664659	48664660	rs11683202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p16.3	PPP1R21	rs11683202-A	0.129359	4E-12		0.023156127	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr2	48664659	48664660	rs11683202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p16.3	PPP1R21	rs11683202-A	0.129365	6E-11		0.021820243	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr2	48668289	48668290	rs78538011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p16.3		rs78538011-T	NR	5E-9		0.0191	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
956	chr2	48668289	48668290	rs78538011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2p16.3		rs78538011-T	NR	2E-8		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
956	chr2	48681996	48681997	rs77272589	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.3	NR	rs77272589-C	0.0697514	5E-12				Affymetrix, Illumina [24332387] (imputed)	N
956	chr2	48681996	48681997	rs77272589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p16.3		rs77272589-?	NR	2E-8				NR [~ 8900000] (imputed)	N
956	chr2	48686694	48686695	rs7606562	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	2p16.3	PPP1R21	rs7606562-T	0.813	1E-8		1.1	[1.07-1.14]	Affymetrix, Illumina [up to 10700000] (imputed)	N
956	chr2	48688634	48688635	rs61387839	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs61387839-A	0.695	1E-8		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
956	chr2	48690595	48690596	rs4497915	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p16.3		rs4497915-G	0.54	2E-13				NR [NR] (imputed)	N
956	chr2	48690595	48690596	rs4497915	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p16.3		rs4497915-G	0.54	2E-8		0.008	% increase	NR [NR] (imputed)	N
956	chr2	48690595	48690596	rs4497915	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	2p16.3		rs4497915-G	0.54	6E-12		0.013	U/L increase	NR [NR] (imputed)	N
956	chr2	48690595	48690596	rs4497915	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	2p16.3	PPP1R21	rs4497915-?	NR	6E-9		0.02959	[0.02-0.04] unit increase novel	Illumina [6108953] (imputed)	N
956	chr2	48691210	48691211	rs11678825	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p16.3	PPP1R21	rs11678825-T	0.127	8E-10		0.03310021	[0.023-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
956	chr2	48724031	48724032	rs62135167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p16.3	NR	rs62135167-C	0.52978	2E-10		0.012284	[0.0085-0.0161] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
956	chr2	48725415	48725415	rs200883214	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p16.3	NR	rs200883214-G	0.443061	2E-9		0.00641075	[0.0041-0.0087] unit increase	Affymetrix [16582621] (imputed)	N
956	chr2	48725415	48725415	rs200883214	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p16.3	NR	rs200883214-G	0.443061	1E-6		0.00559062	[0.0031-0.0081] unit increase	Affymetrix [16582614] (imputed)	N
956	chr2	48726785	48726786	rs72822251	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p16.3	PPP1R21	rs72822251-C	NR	5E-6		0.0608663	[0.035-0.087] unit increase	Illumina [13519193] (imputed)	N
956	chr2	48734772	48734773	rs12620002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.3	NR	rs12620002-C	0.487515	9E-10				Affymetrix, Illumina [21126107] (imputed)	N
956	chr2	48749649	48749649	rs757556114	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p16.3	NR	rs757556114-?	NR	3E-9	(right caudate)			NR [9227495] (imputed)	N
956	chr2	48755476	48755477	rs62135193	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p16.3	STON1	rs62135193-C	0.458625	4E-8		0.0108683	[0.007-0.0147] unit increase	Affymetrix [NR] (imputed)	N
957	chr2	48759844	48759845	rs10184783	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	2p16.3	NR	rs10184783-?	NR	3E-6		0.0155	[0.009-0.022] unit increase	Illumina [~ 7800000] (imputed)	N
957	chr2	48761429	48761430	rs2177487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p16.3		rs2177487-G	NR	2E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
957	chr2	48772201	48772202	rs7557600	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative atrial fibrillation after cardiac surgery	242 cases, 640 controls	NA	2p16.3	STON1	rs7557600-?	NR	7E-7	(adjusted for delirium, myocardial infarction, renal failure and stroke)	2.0408163	[1.54-2.7]	Illumina [9007469] (imputed)	N
957	chr2	48775582	48775583	rs77637988	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	2p16.3	PPP1R21, STON1, GTF2A1L	rs77637988-?	NR	1E-7		0.071	[0.096-0.045] unit decrease	Illumina [12039492] (imputed)	N
957	chr2	48776216	48776217	rs4953592	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p16.3	NR	rs4953592-G	NR	8E-10		0.0227	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
957	chr2	48778222	48778223	rs77428094	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p16.3	STON1	rs77428094-T	0.1932	2E-8		0.01829609	[0.012-0.025] unit decrease	Affymetrix [~ 11515000] (imputed)	N
957	chr2	48798104	48798105	rs184439643	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p16.3	STON1, STON1-GTF2A1L	rs184439643-A	0.016	7E-6		0.1321	[0.075-0.19] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
957	chr2	48799021	48799022	rs56837599	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2p16.3	STON1	rs56837599-A	0.053	1E-7	(Proton pump inhibitors [A02BC])	1.95		Illumina [16500000] (imputed)	N
957	chr2	48800666	48800667	rs13010692	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	2p16.3	NR	rs13010692-C	0.32	7E-9		0.22	[0.14-0.3] unit increase	Affymetrix [9231066] (imputed)	N
957	chr2	48800666	48800667	rs13010692	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	2p16.3	NR	rs13010692-C	0.32	7E-9		0.22	[0.14-0.3] unit increase	Affymetrix [9231066] (imputed)	N
957	chr2	48804775	48804776	rs66888174	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.3	PPP1R21, STON1-GTF2A1L	rs66888174-A	0.6716	1E-7		0.00960485	[0.0061-0.0131] unit increase	Affymetrix [11880941] (imputed)	N
957	chr2	48806454	48806454	rs112134660	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2p16.3	STON1, STON1-GTF2A1L	rs112134660-?	NR	2E-10		0.468	[0.32-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
957	chr2	48822380	48822381	rs2140551	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotellamassilia abundance in stool	5,959 Finnish ancestry individuals	NA	2p16.3		rs2140551-A	0.372373	2E-9		0.10983	[0.074-0.145] unit decrease	Illumina [7980478] (imputed)	N
957	chr2	48822539	48822540	rs7574549	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2p16.3	STON1, GTF2A1L	rs7574549-T	0.9385	5E-6		0.1831	[0.1-0.26] unit decrease	Illumina [up to 38043574] (imputed)	N
957	chr2	48824500	48824501	rs3749146	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2p16.3	STON1	rs3749146-?		3E-6				Illumina [859311]	N
957	chr2	48842831	48842832	rs143359137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	STON1-GTF2A1L	rs143359137-T	0.999	5E-6	(AA)	0.464	unit increase	Illumina [NR] (imputed)	N
957	chr2	48851516	48851517	rs35258848	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	2p16.3	GTF2A1L	rs35258848-T	0.8709	7E-7		0.3635	[0.22-0.51] unit decrease	Affymetrix [8590397] (imputed)	N
958	chr2	48904549	48904550	rs12713012	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2p16.3		rs12713012-T	0.7	3E-11		0.1	unit increase	Illumina [2093892] (imputed)	N
958	chr2	48904549	48904550	rs12713012	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2p16.3		rs12713012-T	0.7	3E-11		0.1	unit increase	Illumina [2398641] (imputed)	N
958	chr2	48904549	48904550	rs12713012	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2p16.3	NR	rs12713012-C	0.28971	3E-8		0.0123839	[0.0081-0.0167] unit increase	Affymetrix [16583148] (imputed)	N
958	chr2	48942281	48942282	rs11125180	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p16.3	NR	rs11125180-A	0.909007	5E-12		0.0325068	[0.023-0.042] unit increase	Affymetrix [16580851] (imputed)	N
958	chr2	48953946	48953947	rs76889437	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	2p16.3	NR	rs76889437-A	0.2214	3E-6		0.1719	[0.1-0.24] unit decrease	Illumina [10677593] (imputed)	N
958	chr2	48953978	48953979	rs72618637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.3		rs72618637-A	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
958	chr2	48953978	48953979	rs72618637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.3		rs72618637-A	NR	8E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
958	chr2	48953978	48953979	rs72618637	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.3	GTF2A1L	rs72618637-T	0.810545	2E-8		0.0099921	[0.0065-0.0135] unit increase	Affymetrix [12370749]	N
958	chr2	48953978	48953979	rs72618637	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.3	NA	rs72618637-A	0.1898	2E-13		0.018	[0.013-0.023] unit decrease	NR [~ 27400000] (imputed)	N
958	chr2	48954841	48954842	rs4953618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p16.3		rs4953618-G	0.501989	5E-8		0.017538	[0.011-0.024] unit increase	Illumina [13479178] (imputed)	N
958	chr2	48954904	48954905	rs7561278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs7561278-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
958	chr2	48954904	48954905	rs7561278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.3		rs7561278-?	NR	1E-13				NR [~ 8900000] (imputed)	N
958	chr2	48954904	48954905	rs7561278	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.3	NA	rs7561278-T	0.7668	5E-16		0.0169	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
958	chr2	48955682	48955683	rs4596023	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p16.3	LHCGR, STON1-GTF2A1L	rs4596023-G	0.73	2E-8		0.014	[0.0081-0.0199] unit increase	Illumina [6108953] (imputed)	N
958	chr2	48961640	48961641	rs6751138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p16.3		rs6751138-?	NR	2E-9				NR [~ 8900000] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p16.3		rs17326656-T	NR	4E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p16.3		rs17326656-T	NR	7E-14		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs17326656-T	NR	4E-17		0.0277852	[0.021-0.034] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs17326656-T	NR	9E-17		0.0274837	[0.021-0.034] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs17326656-T	NR	3E-9		0.0196304	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
958	chr2	48962290	48962291	rs17326656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs17326656-T	NR	2E-9		0.0200435	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
958	chr2	48962290	48962291	rs17326656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2p16.3	NR	rs17326656-T	NR	4E-12		0.0203	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
958	chr2	48962290	48962291	rs17326656	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p16.3	STON1-GTF2A1L	rs17326656-G	0.761528	4E-14		0.0176669	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
958	chr2	48962290	48962291	rs17326656	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p16.3	STON1-GTF2A1L	rs17326656-G	0.761335	8E-24		0.0225271	[0.018-0.027] unit increase	Affymetrix [NR] (imputed)	N
958	chr2	48962290	48962291	rs17326656	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p16.3	STON1-GTF2A1L	rs17326656-G	0.761267	2E-15		0.0183006	[0.014-0.023] unit increase	Affymetrix [NR] (imputed)	N
958	chr2	48962290	48962291	rs17326656	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p16.3	LHCGR, STON1-GTF2A1L	rs17326656-?	NR	2E-10		0.0194	[0.014-0.025] unit increase	Affymetrix [5701386] (imputed)	N
958	chr2	48962290	48962291	rs17326656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p16.3	NR	rs17326656-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
958	chr2	48962290	48962291	rs17326656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p16.3		rs17326656-?	NR	9E-11				NR [~ 8900000] (imputed)	N
958	chr2	48962290	48962291	rs17326656	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p16.3	NR	rs17326656-T	0.24	9E-13		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
958	chr2	48962290	48962291	rs17326656	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p16.3	NR	rs17326656-T	0.24	5E-8				Affymetrix [2446094] (imputed)	N
958	chr2	48962290	48962291	rs17326656	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p16.3	NR	rs17326656-T	0.2346	6E-13		0.0153	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
958	chr2	48962290	48962291	rs17326656	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.3	NA	rs17326656-T	0.2346	4E-13		0.0153	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
958	chr2	48967681	48967682	rs4953621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs4953621-C	NR	2E-11		0.0215862	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
958	chr2	48967681	48967682	rs4953621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs4953621-C	NR	7E-12		0.0220927	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
958	chr2	48976576	48976577	rs13019537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs13019537-G	NR	6E-11		0.0252612	[0.018-0.033] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48976576	48976577	rs13019537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs13019537-G	NR	2E-10		0.0246137	[0.017-0.032] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48976885	48976886	rs13020003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs13020003-C	NR	6E-9		0.0175479	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48976885	48976886	rs13020003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs13020003-C	NR	2E-8		0.0169791	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48976885	48976886	rs13020003	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p16.3	NR	rs13020003-C	0.326875	4E-10		0.0170182	[0.012-0.022] unit increase	Affymetrix [16585745] (imputed)	N
958	chr2	48978158	48978159	rs13405728	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p16.3	LHCGR	rs13405728-A	NR	4E-9		1.35	[NR]	Affymetrix [NR] (imputed)	N
958	chr2	48978158	48978159	rs13405728	21151128	Chen ZJ	2010-12-12	Nat Genet	Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3.	Polycystic ovary syndrome	744 Han Chinese ancestry cases, 895 Han Chinese ancestry controls	3,338 Han Chinese ancestry cases, 5,792 Han Chinese ancestry controls	2p16.3	FSHR, GTF2A1L, LHCGR	rs13405728-A	0.76	8E-21		1.41	[1.30-1.49]	Affymetrix [611633]	N
958	chr2	48980506	48980507	rs4465809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs4465809-T	NR	8E-12		0.0193508	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48980506	48980507	rs4465809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs4465809-T	NR	2E-11		0.0190371	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
958	chr2	48980506	48980507	rs4465809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L, LHCGR	rs4465809-T	NR	3E-8		0.0159419	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
958	chr2	48980506	48980507	rs4465809	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p16.3	NR	rs4465809-T	0.4917	4E-11		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
958	chr2	48988722	48988723	rs201250103	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2p16.3	NR	rs201250103-?	NR	1E-6		0.03058	[0.018-0.043] unit decrease	Affymetrix [9658292] (imputed)	N
958	chr2	48990166	48990167	rs4953627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L	rs4953627-T	NR	3E-9		0.0200644	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
958	chr2	48990166	48990167	rs4953627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L	rs4953627-T	NR	7E-10		0.0208706	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
958	chr2	48993596	48993597	rs4368379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L	rs4368379-T	NR	2E-8		0.0202954	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
958	chr2	48993596	48993597	rs4368379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p16.3	STON1-GTF2A1L	rs4368379-T	NR	9E-9		0.0208749	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
959	chr2	49052254	49052255	rs4482537	28775256	Kawashima-Kumagai K	2017-08-03	Sci Rep	A genome-wide association study identified a novel genetic loci STON1-GTF2A1L/LHCGR/FSHR for bilaterality of neovascular age-related macular degeneration.	Laterality in neovascular age-related macular degeneration	803 Japanese ancestry unilateral cases, 321 Japanese ancestry bilateral cases	132 Japanese ancestry unilateral cases, 36 Japanese ancestry bilateral cases, 78 Asian ancestry unilateral cases, 24 Asian ancestry bilateral cases	2p16.3	STON1, GTF2A1L, LHCGR, FSHR	rs4482537-C	0.3	3E-8		1.69	[1.40-2.03]	Illumina [581252]	N
959	chr2	49080933	49080934	rs56012105	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs56012105-T	0.603	2E-8	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr2	49143828	49143829	rs10490120	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	2p16.3	FSHR	rs10490120-?		1E-6				Illumina [7405822] (imputed)	N
960	chr2	49177600	49177601	rs7591064	20923822	Niu N	2010-10-05	Genome Res	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.	Radiation response	93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines	NA	2p16.3	FSHR	rs7591064-?	0.11	5E-6				Affymetrix, Illumina [1348798]	N
960	chr2	49194229	49194230	rs145560212	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2p16.3	RP11-460M2.1, FSHR	rs145560212-T	0.0023	6E-6		0.9121	[0.52-1.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr2	49194508	49194509	rs2300441	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels in polycystic ovary syndrome	1,882 Han Chinese ancestry individuals	NA	2p16.3	NR	rs2300441-A	0.3578	7E-14		0.4335	NR unit decrease	Affymetrix [3101376] (imputed)	N
960	chr2	49194508	49194509	rs2300441	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels	2,590 Han Chinese ancestry individuals	NA	2p16.3	NR	rs2300441-A	0.3719	3E-16		0.4151	NR unit decrease	Affymetrix [3101376] (imputed)	N
960	chr2	49201327	49201328	rs2268363	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2p16.3	FSHR	rs2268363-?	0.18	5E-8		7.03	[NR]	Affymetrix [512497]	N
960	chr2	49201611	49201612	rs2268361	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	2p16.3	FSHR	rs2268361-C	0.504	1E-12		1.15	[NR]	Affymetrix [NR] (imputed)	N
960	chr2	49210745	49210746	rs17398620	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.3	NR	rs17398620-A	0.01394	2E-8	(AKR1B10)	1.92	NR unit increase	Illumina [1671387] (imputed)	N
960	chr2	49222871	49222872	rs6732220	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	2p16.3	NR	rs6732220-C	0.77	4E-8		0.02	[0.012-0.028] unit increase	Affymetrix [~ 8600000] (imputed)	N
960	chr2	49250970	49250971	rs12713034	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	2p16.3	FSHR	rs12713034-A	0.557	8E-6				Illumina [6007542] (imputed)	N
960	chr2	49272811	49272812	rs3850344	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p16.3	NA	rs3850344-T		6E-11		0.0121874	[0.0085-0.0158] unit decrease	Illumina [13288253] (imputed)	N
961	chr2	49362367	49362367	rs140123771	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels in polycystic ovary syndrome	1,882 Han Chinese ancestry individuals	NA	2p16.3	NR	rs140123771-AT	0.2041	5E-6		0.3058	NR unit decrease	Affymetrix [3101376] (imputed)	N
961	chr2	49362367	49362367	rs140123771	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone levels	2,590 Han Chinese ancestry individuals	NA	2p16.3	NR	rs140123771-AT	0.2149	4E-7		0.2985	NR unit decrease	Affymetrix [3101376] (imputed)	N
961	chr2	49366955	49366956	rs12713037	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.3		rs12713037-T	0.31	3E-12		6.97	z score increase	Affymetrix [9061022] (imputed)	N
961	chr2	49366955	49366956	rs12713037	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	2p16.3	PRDM16	rs12713037-?		2E-8				NR [7428630] (imputed)	N
961	chr2	49367543	49367544	rs13431289	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.3		rs13431289-T	0.32	1E-14		7.72	z score increase	Affymetrix [9061022] (imputed)	N
961	chr2	49367543	49367544	rs13431289	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.3	NR	rs13431289-T	0.3158	2E-15				NR [9056863] (imputed)	N
961	chr2	49367543	49367544	rs13431289	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.3	NR	rs13431289-T	0.3158	8E-14				NR [9056863] (imputed)	N
961	chr2	49368474	49368475	rs1504172	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	2p16.3		rs1504172-?	NR	5E-18				NR [9705931] (imputed)	N
961	chr2	49369280	49369281	rs12996623	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.3		rs12996623-C	0.32	7E-25		10.3	z score increase	Affymetrix [9061022] (imputed)	N
961	chr2	49378130	49378131	rs116370819	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	2p16.3	STON1-GTF2A1L, RPL7P13, FSHR	rs116370819-G	0.03	5E-7		1.39	[0.84-1.94] unit decrease	Illumina [8248960] (imputed)	N
961	chr2	49391012	49391013	rs10495963	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p16.3	NR	rs10495963-T	0.7238	2E-8	(Lingual)	0.003513416	[0.0023-0.0047] unit increase	Affymetrix, Illumina [NR]	N
961	chr2	49401201	49401202	rs972557	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.3	FSHR, NRXN1	rs972557-T	0.5018	2E-8		0.00947014	[0.0062-0.0128] unit increase	Affymetrix [11880941] (imputed)	N
961	chr2	49413859	49413860	rs13023587	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p16.3	FSHR, STON1-GTF2A1L	rs13023587-C		2E-15		0.0068	[0.005-0.0086] unit increase	Affymetrix [13304133] (imputed)	N
962	chr2	49479987	49479987	rs35028061	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	2p16.3	RNU6-439P	rs35028061-GT	0.38	2E-8		0.0062223	[0.0041-0.0084] unit increase	NR [16367095] (imputed)	N
962	chr2	49491809	49491810	rs10495970	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2p16.3	FSHR	rs10495970-?		5E-7	(AA)	10.3	[NR]	Illumina [936149]	N
962	chr2	49498005	49498006	rs9636436	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2p16.3	intergenic	rs9636436-?		2E-7	(AA)	11.1	[NR]	Illumina [936149]	N
963	chr2	49558690	49558691	rs13001925	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	2p16.3		rs13001925-?	NR	9E-6		1.2		NR [577656]	N
963	chr2	49599539	49599540	rs7583216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.3	Intergenic	rs7583216-A	0.085	2E-8	(MTAG)	0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
963	chr2	49605566	49605567	rs57081355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.3	Intergenic	rs57081355-T	0.0854	8E-12	(MTAG)	0.0202	[0.014-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
963	chr2	49605566	49605567	rs57081355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs57081355-T	0.0853	6E-10	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
963	chr2	49641555	49641556	rs17835319	25649181	Noordam R	2015-01-20	J Psychiatr Res	Identifying genetic loci associated with antidepressant drug response with drug-gene interaction models in a population-based study.	Depressive symptoms (SSRI exposure interaction)	175 users,  6,268 nonusers	NA	2p16.3	FSHR	rs17835319-A	0.12	2E-6		0.74	[0.47-1.01] unit increase	Illumina [NR] (imputed)	N
964	chr2	49689432	49689433	rs180692309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	Intergenic	rs180692309-T	0.999	4E-7	(AA)	0.568	unit increase	Illumina [NR] (imputed)	N
964	chr2	49689432	49689433	rs180692309	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	Intergenic	rs180692309-T	0.999	2E-6	(AA)	2.682	NR unit increase	Illumina [NR] (imputed)	N
964	chr2	49715020	49715021	rs12987465	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	2p16.3	FSHR	rs12987465-A	0.359	7E-6	(Recessive model)	2.597	[1.424-4.737]	Illumina [733202]	N
964	chr2	49716852	49716853	rs1405966	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	2p16.3	FSHR	rs1405966-A	NR	5E-6	(women)	0.205	[0.12-0.29] unit increase	Illumina [5527232] (imputed)	N
964	chr2	49736501	49736502	rs7602024	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sucrose	686 European ancestry twins	NA	2p16.3	RP11-443F4.1	rs7602024-A	0.76	5E-6		0.5	[0.28-0.72] unit increase	Illumina [5833901] (imputed)	N
964	chr2	49737633	49737634	rs4971864	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	2p16.3	intergenic	rs4971864-?	NR	7E-6		1.1791577	[1.1-1.27]	Illumina [5842835] (imputed)	N
964	chr2	49750697	49750698	rs10495976	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.3		rs10495976-A	0.6114	1E-13		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
964	chr2	49750697	49750698	rs10495976	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p16.3	FSHR, NRXN1	rs10495976-T	0.391	5E-14		1.0279605		Affymetrix [11880941] (imputed)	N
964	chr2	49750697	49750698	rs10495976	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.3	FSHR, NRXN1	rs10495976-A	0.609	5E-14		0.0130441	[0.0096-0.0164] unit decrease	Affymetrix [11880941] (imputed)	N
964	chr2	49750697	49750698	rs10495976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p16.3		rs10495976-?	NR	2E-9				NR [~ 8900000] (imputed)	N
964	chr2	49782424	49782425	rs142592479	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		2p16.3	NR	rs142592479-A	0.0226635	4E-6		1.122	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
965	chr2	49809031	49809032	rs10173945	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.3		rs10173945-T	0.6185	3E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
965	chr2	49849267	49849268	rs10179773	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.3	NR	rs10179773-A	0.233	7E-11		0.00835799	[0.0058-0.0109] unit decrease	NR [9732723] (imputed)	N
965	chr2	49849267	49849268	rs10179773	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p16.3	NR	rs10179773-A	0.235	9E-9		0.0099359	[0.0066-0.0133] unit increase	NR [9732723] (imputed)	N
965	chr2	49856030	49856031	rs191932161	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p16.3	FSHR, NRXN1	rs191932161-A	0.016805906	7E-6		1.3283206	[1.173299068-1.503824372]	Illumina [10439017] (imputed)	N
965	chr2	49881607	49881608	rs11125268	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.3		rs11125268-G	0.692	1E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
965	chr2	49906863	49906864	rs4567981	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p16.3		rs4567981-T	NR	9E-7		4.9149494	z score increase	Affymetrix, Illumina [NR] (imputed)	N
965	chr2	49906863	49906864	rs4567981	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p16.3		rs4567981-T	NR	9E-7		4.9149494	z score increase	Affymetrix, Illumina [NR] (imputed)	N
965	chr2	49908150	49908151	rs6744040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs6744040-A	0.5117	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
965	chr2	49908150	49908151	rs6744040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs6744040-A	0.5117	4E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
965	chr2	49916923	49916924	rs2350702	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2p16.3	NR	rs2350702-?	NR	2E-6				Illumina [7427422] (imputed)	N
966	chr2	49955496	49955497	rs17039212	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	2p16.3	intergenic	rs17039212-?	0.10	9E-6			[NR]	Affymetrix [313238]	N
966	chr2	49975430	49975431	rs114171617	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder	3,833 European ancestry female cases, 5,280 European ancestry female controls, 1,481 European ancestry male cases, 4,869  European ancestry male controls	NA	2p16.3	FSHR, NRXN1	rs114171617-A	0.9838	4E-6	(male)	0.4946	[0.29-0.7] unit decrease	NR [NR] (imputed)	N
966	chr2	50007747	50007748	rs67908106	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	2p16.3	NR	rs67908106-A	0.64	2E-6		1.48	[-0.6564-3.6164]	Affymetrix [at least 143006] (imputed)	N
966	chr2	50010960	50010961	rs10178415	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	2p16.3	NR	rs10178415-T	0.64	7E-7		1.5	[-0.6364-3.6364]	Affymetrix [at least 143006] (imputed)	N
966	chr2	50047482	50047483	rs1401327	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	2p16.3	NRXN1	rs1401327-A	0.113	4E-8	(EA, 25 years or older)	1.157	[1.098-1.218]	Affymetrix, Illumina [NR] (imputed)	N
966	chr2	50047482	50047483	rs1401327	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	2p16.3	NRXN1	rs1401327-A	0.113	3E-7		1.139	[1.084-1.198]	Affymetrix, Illumina [NR] (imputed)	N
966	chr2	50052594	50052595	rs6545135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p16.3		rs6545135-?	NR	4E-8				NR [~ 8900000] (imputed)	N
966	chr2	50065879	50065880	rs72831198	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.3		rs72831198-T	0.8235	5E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
967	chr2	50144320	50144321	rs12465974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.3		rs12465974-?	NR	2E-9				NR [~ 8900000] (imputed)	N
967	chr2	50152279	50152280	rs72885862	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	2p16.3	NR	rs72885862-?	NR	8E-8		0.118298	[0.075-0.161] unit increase	NR [13958389] (imputed)	N
967	chr2	50184393	50184394	rs11681792	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	2p16.3	NR	rs11681792-A	0.179	4E-7	(Non-substance related behavioral disinhibition)			Illumina [527829]	N
968	chr2	50201109	50201110	rs9636391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.3		rs9636391-?	NR	8E-17				NR [~ 8900000] (imputed)	N
968	chr2	50201109	50201110	rs9636391	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.3	NA	rs9636391-A	0.1593	7E-19		0.0204	[0.016-0.025] unit increase	NR [~ 27400000] (imputed)	N
968	chr2	50201546	50201547	rs6761463	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.3	NRXN1	rs6761463-G	0.1622	1E-11		0.0125814	[0.0089-0.0162] unit increase	Affymetrix [12370749]	N
968	chr2	50217994	50217995	rs1421567	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs1421567-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
968	chr2	50233351	50233352	rs930295	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.3	NA	rs930295-A	0.1548	2E-19		0.0208	[0.016-0.025] unit increase	NR [~ 27400000] (imputed)	N
968	chr2	50240254	50240255	rs2859977	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p16.3	NR	rs2859977-T	0.163	1E-9		0.0204298	[0.014-0.027] unit increase	Affymetrix [10549349] (imputed)	N
968	chr2	50240643	50240644	rs3796036	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2p16.3	NR	rs3796036-G	NR	3E-6		0.009513	[0.0055-0.0135] unit decrease	Illumina [~ 540852]	N
968	chr2	50241267	50241268	rs7573331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs7573331-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
968	chr2	50260405	50260406	rs116131939	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p16.3	NRXN1	rs116131939-T	0.0833	6E-16		1.0543		Affymetrix [11880941] (imputed)	N
968	chr2	50297204	50297205	rs13401630	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs13401630-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
969	chr2	50368228	50368229	rs12467877	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p16.3	NRXN1	rs12467877-?		7E-10				Illumina [4322238] (imputed)	N
969	chr2	50420756	50420757	rs115487787	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2p16.3	NR	rs115487787-T	0.0463	7E-6		0.3084	[0.17-0.44] unit increase	Illumina [7305641] (imputed)	N
969	chr2	50429860	50429861	rs6545155	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p16.3	NRXN1	rs6545155-T	0.7825	1E-8		0.1691	[0.11-0.23] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
969	chr2	50430552	50430553	rs17040190	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p16.3	NRXN1	rs17040190-C	0.0742	2E-14		1.057		Affymetrix [11880941] (imputed)	N
969	chr2	50460479	50460480	rs7602425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p16.3		rs7602425-?	NR	6E-10				NR [~ 8900000] (imputed)	N
970	chr2	50483947	50483948	rs62133116	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p16.3	Intergenic	rs62133116-?		2E-6		1.05	[1.03-1.07]	Illumina [7645193] (imputed)	N
970	chr2	50483947	50483948	rs62133116	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p16.3	Intergenic	rs62133116-?		2E-6		1.48	[1.26-1.74]	Illumina [7645193] (imputed)	N
970	chr2	50494710	50494711	rs80262609	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p16.3	NRXN1	rs80262609-?		3E-8				Illumina [4322238] (imputed)	N
970	chr2	50516017	50516018	rs1356888	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p16.3	NRXN1	rs1356888-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
970	chr2	50525627	50525628	rs1520524	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.3		rs1520524-T	0.1006	3E-12		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
970	chr2	50532839	50532840	rs12470914	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p16.3	NRXN1	rs12470914-A	0.1005	3E-17		1.0513		Affymetrix [11880941] (imputed)	N
970	chr2	50532839	50532840	rs12470914	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.3	NRXN1	rs12470914-A	0.1005	3E-17		1.0544297		Affymetrix [11880941] (imputed)	N
970	chr2	50545588	50545589	rs115062292	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	2p16.3		rs115062292-T	NR	7E-6		2.68		Illumina [NR] (imputed)	N
970	chr2	50545588	50545589	rs115062292	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	2p16.3		rs115062292-T	NR	7E-6		2.53		Illumina [NR] (imputed)	N
970	chr2	50580851	50580852	rs12475081	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs12475081-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr2	50596606	50596607	rs1402121	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p16.3	NR	rs1402121-C	0.1998	7E-11		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
971	chr2	50600608	50600611	rs149287243	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.3	NR	rs149287243-G	0.01568	5E-9	(ME1)	0.1123	NR unit decrease	Illumina [1671387] (imputed)	N
971	chr2	50602586	50602587	rs7608187	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	2p16.3	NRXN1	rs7608187-G	0.581477	1E-10		0.020096	[0.014-0.026] unit increase	NR [16426330] (imputed)	N
971	chr2	50606641	50606642	rs7564130	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p16.3	NR	rs7564130-?		3E-11		0.0149864	[0.011-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
971	chr2	50609259	50609260	rs184879080	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.3	NR	rs184879080-C	0.01045	3E-10	(ME1)	0.1314	NR unit decrease	Illumina [1671387] (imputed)	N
971	chr2	50612631	50612632	rs116340739	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (standardized total average toxicity_physician)	881 Dutch ancestry individuals	246 Dutch ancestry individuals	2p16.3		rs116340739-C	NR	5E-6		0.4585297	[0.26-0.65] increase	Illumina [6334277] (imputed)	N
971	chr2	50627596	50627597	rs2139629	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.3	NRXN1	rs2139629-A	0.7722	6E-10		0.2007	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
971	chr2	50645889	50645890	rs939400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs939400-T	0.3685	8E-11		0.0095	[0.0066-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
971	chr2	50645889	50645890	rs939400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs939400-T	0.3685	2E-8	(MTAG)	0.0076	[0.0049-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
971	chr2	50659030	50659031	rs6545169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p16.3		rs6545169-?	NR	3E-9				NR [~ 8900000] (imputed)	N
971	chr2	50687012	50687013	rs985919	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.3	NRXN1	rs985919-C	0.710731	2E-10		0.014332	[0.0099-0.0188] unit increase	NR [16516521] (imputed)	N
971	chr2	50692167	50692168	rs1520455	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p16.3	NR	rs1520455-T	0.61	5E-8		0.0106	[0.0067-0.0145] unit decrease	NR [NR]	N
971	chr2	50692167	50692168	rs1520455	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs1520455-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
971	chr2	50692167	50692168	rs1520455	28459102	Zhang S	2016-04-20	JDR Clin Trans Res	The Novel ASIC2 Locus is Associated with Severe Gingival Inflammation.	Severe gingival inflammation	4,077 European American individuals	NA	2p16.3	NRXN1	rs1520455-?	NR	4E-6		0.386289	[0.22-0.55] unit increase	Affymetrix [2500000] (imputed)	N
971	chr2	50692939	50692940	rs13398860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs13398860-A	0.6529	6E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
971	chr2	50696914	50696915	rs2193062	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.3	NR	rs2193062-A	0.58	2E-10		0.00699252	[0.0048-0.0091] unit decrease	NR [9732723] (imputed)	N
971	chr2	50715630	50715631	rs6726707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p16.3		rs6726707-C	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
971	chr2	50716015	50716016	rs10180284	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p16.3	NRXN1	rs10180284-C	0.516831	9E-9		0.01146	[0.0076-0.0154] unit increase	Affymetrix [NR] (imputed)	N
971	chr2	50716015	50716016	rs10180284	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p16.3	NR	rs10180284-T	0.4834	5E-8		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
972	chr2	50731317	50731318	rs6754640	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	2p16.3	NRXN1	rs6754640-A	0.452	1E-6	(Novelty seeking)	0.15	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
972	chr2	50735942	50735943	rs7598402	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.3	NR	rs7598402-G	0.492084	7E-9	(Conditioned on chr2:51341259)	0.014728254	[0.0097-0.0197] unit decrease	NR [~ 10000000] (imputed)	N
972	chr2	50742226	50742227	rs10187101	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p16.3	NR	rs10187101-T	0.3594	3E-11		0.017220821	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
972	chr2	50744773	50744774	rs10176705	20691247	Verweij KJ	2010-08-04	Biol Psychol	A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.	Personality dimensions	5,117 European ancestry individuals from 2567 families	NA	2p16.3	NRXN1	rs10176705-T	0.37	9E-6	(Novelty Seeking)	0.1	[NR] unit increase	Affymetrix, Illumina [1252387] (imputed)	N
972	chr2	50748754	50748755	rs1014667	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p16.3	NR	rs1014667-?	NR	9E-8	(AA)	1.7115	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
972	chr2	50760502	50760503	rs6750634	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	2p16.3	NRXN1	rs6750634-A		4E-6		0.2936	unit decrease	Illumina [5767231] (imputed)	N
972	chr2	50817469	50817470	rs6733430	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.3	FSHR	rs6733430-?	NR	3E-6	(TAG 58:11)	0.17041777	[0.099-0.242] unit increase	Affymetrix [at least 2500000] (imputed)	N
973	chr2	50856869	50856870	rs2059308	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.3	NR	rs2059308-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
973	chr2	50856869	50856870	rs2059308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.3		rs2059308-?	NR	2E-8				NR [~ 8900000] (imputed)	N
973	chr2	50890095	50890096	rs698842	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	2p16.3	NR	rs698842-A	0.22	2E-6		1.96	[1.69-2.23]	NR [up to 6398204] (imputed)	N
973	chr2	50927118	50927119	rs115249811	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	NRXN1	rs115249811-C	1.0	2E-7	(AA)	0.834	unit increase	Illumina [NR] (imputed)	N
974	chr2	50994254	50994255	rs17502934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs17502934-T	0.1489	2E-17		0.0167	[0.013-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
974	chr2	50994254	50994255	rs17502934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs17502934-T	0.1489	5E-16	(MTAG)	0.0149	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
974	chr2	50996951	50996952	rs3892750	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	2p16.3	NRXN1	rs3892750-C	0.776394286	1E-6		0.160661	[0.096-0.225] unit increase	Illumina [6969139] (imputed)	N
974	chr2	50996951	50996952	rs3892750	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	2p16.3	NR	rs3892750-?		7E-6				Illumina [up to 6969139] (imputed)	N
974	chr2	51017477	51017478	rs62140599	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs62140599-A	0.7816	1E-16	(conditional-joint)	0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
974	chr2	51019600	51019601	rs13017116	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2p16.3	NR	rs13017116-T	0.28827	2E-10		0.049643014	[0.034-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
974	chr2	51027796	51027797	rs138886720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p16.3		rs138886720-T	0.246357	1E-8		0.0180429	[0.012-0.024] unit decrease	Illumina [13479924] (imputed)	N
974	chr2	51059752	51059753	rs10205754	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p16.3	NRXN1	rs10205754-T	NR	1E-7	(AA)			Illumina [up to 11995908] (imputed)	N
974	chr2	51080480	51080481	rs17504614	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2p16.3		rs17504614-T	0.8172	4E-8		40.308456	z score increase	NR [6814003]	N
974	chr2	51080480	51080481	rs17504614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p16.3		rs17504614-?	NR	5E-8				NR [~ 8900000] (imputed)	N
974	chr2	51080480	51080481	rs17504614	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p16.3	NR	rs17504614-T	0.7997	2E-8		0.015698094	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
974	chr2	51082753	51082754	rs10490175	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p16.3	NRXN1	rs10490175-?	NR	2E-8		0.014611234	[0.0095-0.0197] unit decrease	NR [7306098]	N
974	chr2	51095501	51095502	rs7589705	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2p16.3		rs7589705-?	NR	3E-8		0.0386	unit increase	NR [NR]	N
974	chr2	51099042	51099043	rs12476120	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.3	NR	rs12476120-T	NR	5E-8		5.455	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
974	chr2	51103717	51103718	rs13000017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p16.3	NR	rs13000017-T	NR	3E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
975	chr2	51123682	51123683	rs1544690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.3		rs1544690-C	NR	6E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
975	chr2	51123682	51123683	rs1544690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.3		rs1544690-C	NR	4E-12		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
975	chr2	51136801	51136802	rs2193412	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	2p16.3	NRXN1	rs2193412-?	NR	4E-6	(Recessive model)	0.6	unit increase	Illumina [542562]	N
975	chr2	51185969	51185970	rs185508190	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	NRXN1	rs185508190-A	1.0	3E-6	(AA)	0.729	unit increase	Illumina [NR] (imputed)	N
975	chr2	51195600	51195601	rs10174398	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p16.3	NRXN1	rs10174398-C	0.577	5E-9	(Japanese)	0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
975	chr2	51198789	51198790	rs141864436	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2p16.3	NRXN1	rs141864436-?	NR	1E-7	(AA)	0.062	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
975	chr2	51202875	51202876	rs71411521	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs71411521-T	0.1523	1E-9	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
975	chr2	51205748	51205749	rs41522849	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.3	NR	rs41522849-?	NR	9E-12				Affymetrix [NR]	N
975	chr2	51230273	51230274	rs17574007	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs17574007-A	0.1215	2E-9		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
975	chr2	51238021	51238022	rs7594447	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.3	NRXN1	rs7594447-A	0.848	8E-10		0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
976	chr2	51250504	51250505	rs7557525	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2p16.3	NR	rs7557525-T	0.347913	5E-16		0.06066932	[0.046-0.075] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
976	chr2	51250504	51250505	rs7557525	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.3	NR	rs7557525-T	NR	4E-8		5.489	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
976	chr2	51287848	51287849	rs12620796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs12620796-A	0.5496	9E-11		0.0121	[0.0084-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
976	chr2	51292331	51292332	rs10180695	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	2p16.3	AC007682.1	rs10180695-T	NR	3E-8		0.01187	unit decrease	Affymetrix [9327396] (imputed)	N
976	chr2	51312123	51312124	rs6750228	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2p16.3	LOC730100	rs6750228-A	0.047	2E-8		0.02232	[0.015-0.03] unit increase	Affymetrix [11709857] (imputed)	N
976	chr2	51341258	51341259	rs10490159	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.3		rs10490159-C	0.601	1E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
976	chr2	51341258	51341259	rs10490159	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.3	NR	rs10490159-T	0.394	3E-14		0.00844875	[0.0063-0.0106] unit increase	NR [9732723] (imputed)	N
976	chr2	51341258	51341259	rs10490159	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.3	NR	rs10490159-T	0.394	4E-11		0.017236533	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
976	chr2	51345806	51345807	rs7603103	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.3	Intergenic	rs7603103-A	0.7565	2E-11	(MTAG)	0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
976	chr2	51345806	51345807	rs7603103	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.3	Intergenic	rs7603103-A	0.7565	6E-11		0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
976	chr2	51360666	51360667	rs11125335	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2p16.3	NRXN1, MIR4431	rs11125335-C		1E-11		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
977	chr2	51423832	51423833	rs1002504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs1002504-T	0.0211	4E-8	(MTAG)	0.025	[0.016-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
977	chr2	51438304	51438305	rs2058857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.3		rs2058857-?	NR	6E-8				NR [~ 8900000] (imputed)	N
977	chr2	51502249	51502250	rs62140695	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.3	Intergenic	rs62140695-T	0.2647	2E-8	(MTAG)	0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
977	chr2	51502249	51502250	rs62140695	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.3	Intergenic	rs62140695-T	0.2596	8E-11	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
978	chr2	51537835	51537836	rs62142886	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.3	Intergenic	rs62142886-C	0.7315	7E-12	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
978	chr2	51539112	51539113	rs62142891	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs62142891-A	0.2632	1E-11		0.0108	[0.0077-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
978	chr2	51539112	51539113	rs62142891	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs62142891-A	0.2632	9E-14	(MTAG)	0.0111	[0.0082-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
978	chr2	51539232	51539233	rs10187482	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.3	NR	rs10187482-?	NR	4E-6		0.0079349	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
979	chr2	51667738	51667739	rs1206397	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	2p16.3	AC007402.3	rs1206397-?	0.0476	3E-7	(PAL6)			Illumina [475971]	N
979	chr2	51675989	51675990	rs28952024	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p16.3	NR	rs28952024-?	NR	1E-8				Illumina [7760689] (imputed)	N
979	chr2	51682454	51682455	rs190183456	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.3	Intergenic	rs190183456-C	1.0	2E-6	(AA)	2.826	NR unit increase	Illumina [NR] (imputed)	N
979	chr2	51736993	51736994	rs1406428	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	2p16.3	intergenic	rs1406428-?	0.28	2E-7	(CSJC , RF+)	2.74	[NR] unit increase	Illumina [534053]	N
979	chr2	51762604	51762605	rs17868167	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Isovolumetric relaxation time	21,852 European ancestry individuals	14,787 European ancestry individuals	2p16.3	NRXN1	rs17868167-A	0.03	6E-6		0.004	[0.002-0.006] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
980	chr2	51819018	51819019	rs72807818	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p16.3	AC007682.1	rs72807818-?	NR	1E-8		0.017506748	[0.011-0.024] unit increase	NR [7306098]	N
980	chr2	51824511	51824512	rs13010288	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p16.3	NR	rs13010288-G	0.8674	9E-12		1.0615711	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
980	chr2	51824511	51824512	rs13010288	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p16.3	NA	rs13010288-G	0.8696	3E-9	(Female)	1.0672358	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
980	chr2	51824511	51824512	rs13010288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.3	Intergenic	rs13010288-T	0.127	2E-11	(MTAG)	0.0167	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
980	chr2	51824511	51824512	rs13010288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.3		rs13010288-T	0.1288	3E-21		0.0198	[0.016-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
980	chr2	51824511	51824512	rs13010288	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.3	Intergenic	rs13010288-T	0.1288	1E-21	(MTAG)	0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
980	chr2	51836283	51836284	rs6733149	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	2p16.3	AC007682.1	rs6733149-C	0.01	5E-6		5.5555553	[2.7-11.11]	Affymetrix, Illumina [up to 7729175] (imputed)	N
980	chr2	51842410	51842411	rs1606979	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2p16.3		rs1606979-A	0.05784	2E-7		36.952526	z score increase	NR [6814003]	N
980	chr2	51853954	51853955	rs1516172	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.3	LOC730100	rs1516172-C	0.798741	2E-9		0.0155112	[0.01-0.021] unit decrease	NR [16516521] (imputed)	N
980	chr2	51873598	51873599	rs1606974	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2p16.3	LOC730100	rs1606974-A	0.1325	5E-8		0.0747	[0.048-0.102] unit increase	NR [9744772] (imputed)	N
980	chr2	51873598	51873599	rs1606974	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p16.3	NR	rs1606974-A	0.1224	2E-10		0.021628154	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
980	chr2	51873598	51873599	rs1606974	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2p16.3	NRXN1	rs1606974-A	0.124	5E-6		0.031	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
980	chr2	51876165	51876166	rs4108601	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	2p16.3	NR	rs4108601-T	0.03691	8E-8		0.4335	[0.28-0.59] unit decrease	Illumina [10677593] (imputed)	N
981	chr2	51920656	51920657	rs6739137	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2p16.3	NR	rs6739137-G	NR	3E-6		0.01313	[0.0076-0.0186] unit increase	Illumina [~ 540852]	N
981	chr2	51930163	51930164	rs1516187	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2p16.3	LOC730100	rs1516187-T	0.131756	3E-10	(EA)	0.0115549	[0.008-0.0151] unit decrease	Affymetrix [~ 8800000] (imputed)	N
981	chr2	51931963	51931964	rs1516179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p16.3		rs1516179-?	NR	1E-9				NR [~ 8900000] (imputed)	N
981	chr2	51932129	51932130	rs1516180	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2p16.3	NR	rs1516180-T	0.110338	5E-10		0.06963125	[0.048-0.092] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
981	chr2	51990958	51990959	rs6709347	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	2p16.3	NR	rs6709347-A	0.1554	2E-6		0.1954	[0.11-0.28] unit increase	Illumina [34985077] (imputed)	N
981	chr2	52022264	52022265	rs17863705	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	2p16.3	NR	rs17863705-C	0.04104	3E-7		0.3931	[0.24-0.54] unit decrease	Illumina [10677593] (imputed)	N
981	chr2	52032772	52032773	rs17868256	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Cheek morphology (partial least square model)	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	2p16.3	intergenic	rs17868256-?	NR	1E-9	(Uyghur, female)	0.0522	[NR] unit increase	Illumina [8100752] (imputed)	N
982	chr2	52039296	52039297	rs140546611	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.3	NR	rs140546611-G	0.01045	2E-9	(SAMHD1)	0.03477	NR unit increase	Illumina [1671387] (imputed)	N
982	chr2	52063360	52063361	rs937380553	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p16.3	LOC730100	rs937380553-?		4E-11	(endometriosis, ovarian cancer, uterine endometriosisometrial cancer)			Illumina [7645193] (imputed)	N
982	chr2	52063360	52063361	rs937380553	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p16.3	LOC730100	rs937380553-?		2E-8				Illumina [7645193] (imputed)	N
982	chr2	52121666	52121667	rs191975838	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p16.3	Intergenic	rs191975838-T	NR	5E-8	(between families)	5.467	unit decrease	Affymetrix [up to 15107142] (imputed)	N
982	chr2	52139280	52139281	rs6712961	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p16.3	intergenic	rs6712961-G	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
983	chr2	52187097	52187098	rs4971775	33338681	Chu H	2020-12-15	Environ Int	A prospective study of the associations among fine particulate matter, genetic variants, and the risk of colorectal cancer.	Colorectal cancer x fine particulate matter exposure levels interaction	590 European ancestry cases, 55 Black cases, 9 Hispanic cases, 28 Asian ancestry cases, 5 cases, 12,715 European ancestry controls, 1,153 Black controls, 37 Hispanic controls, 94 Asian ancestry controls, 15 controls	NA	2p16.3	NRXN1	rs4971775-G	0.062	4E-9		1.21	[1.14-1.29]	Illumina [4085111] (imputed)	N
983	chr2	52227823	52227824	rs11125398	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to calcium-channel-Active anticonvulsants in focal epilepsy	214 European ancestry cases, 410 European ancestry controls	NA			rs11125398-?	NR	3E-6				Illumina [NR] (imputed)	N
983	chr2	52230929	52230930	rs2355182	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.3	Intergenic	rs2355182-T	0.5541	7E-11	(MTAG)	0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
983	chr2	52230929	52230930	rs2355182	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.3	Intergenic	rs2355182-T	0.554	8E-9	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
983	chr2	52237662	52237663	rs35448505	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p16.3	LOC730100	rs35448505-G	0.06173	2E-6	(African)			Illumina [4404269] (imputed)	N
983	chr2	52250288	52250289	rs6720215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.3	Intergenic	rs6720215-T	0.5449	3E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
983	chr2	52260751	52260752	rs10203140	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	2p16.3	NR	rs10203140-?	NR	7E-6		16.64	[9.68-23.6] unit decrease	Illumina [498648]	N
983	chr2	52279315	52279316	rs141161671	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	2p16.3	AC007682.1	rs141161671-A	0.01	3E-8		6.5	[3.35-12.62]	Affymetrix, Illumina [up to 7729175] (imputed)	N
984	chr2	52358850	52358851	rs113778714	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.3	NR	rs113778714-G	0.01742	3E-9	(HIBADH)	0.3132	NR unit increase	Illumina [1671387] (imputed)	N
984	chr2	52369736	52369737	rs13015643	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	2p16.3	AC007682.1	rs13015643-C	0.07551	2E-7		2.02	[1.75-2.29]	Illumina [281811]	N
984	chr2	52390118	52390119	rs60086424	30450575	Hojfeldt SG	2018-11-18	Br J Haematol	Genetic predisposition to PEG-asparaginase hypersensitivity in children treated according to NOPHO ALL2008.	PEG-asparaginase hypersensitivity without enzyme activity in childhood acute lymphoblastic leukaemia	59 European ancestry cases, 772 European ancestry controls	NA	2p16.3	NR	rs60086424-T	NR	1E-7		5.85	[3.03-11.3]	Illumina [NR]	N
985	chr2	52510091	52510092	rs79125412	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p16.3	LOC730100	rs79125412-C	0.1231	3E-7	(African)			Illumina [4404269] (imputed)	N
985	chr2	52511793	52511794	rs17042688	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	2p16.3	NR	rs17042688-?	0.038	1E-6		1.911	[1.474-2.476] unit increase	Illumina [563945]	N
985	chr2	52520920	52520921	rs7607212	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	2p16.3	NRXN1	rs7607212-?	NR	2E-6		0.11	[NR] unit decrease	Illumina [> 2600000] (imputed)	N
986	chr2	52600066	52600067	rs17042852	26154020	Ferrari R	2015-06-12	Neurobiol Aging	A genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.	Frontotemporal dementia	530 European ancestry cases, 926 European ancestry controls	NA	2p16.3	LOC730100	rs17042852-C	0.04	2E-7		2.82	[1.91-4.18]	Illumina [2292247] (imputed)	N
986	chr2	52606078	52606079	rs115689122	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	2p16.3	AC087073.1	rs115689122-A	0.0054	8E-6		6.1189	[5.32-6.92]	Illumina [10736316] (imputed)	N
986	chr2	52624779	52624780	rs4971815	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Non-accommodative esotropia	826 European ancestry cases, 2,991 European ancestry controls	689 European ancestry cases, 1,448 European ancestry controls	2p16.3	LOC730100	rs4971815-A	0.65	9E-6		1.3513513	NR	Illumina [6470615] (imputed)	N
986	chr2	52644165	52644166	rs11125426	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	2p16.3	LOC730100, MIR4431	rs11125426-?	NR	2E-7		0.41	0.09-0.72	Illumina [7605010] (imputed)	N
987	chr2	52693842	52693843	rs17732209	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	2p16.3	NR	rs17732209-?	NR	4E-6		0.0586	[0.034-0.083] unit increase	Illumina [at least 560000] (imputed)	N
987	chr2	52703589	52703590	rs12619788	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	2p16.3	intergenic	rs12619788-G	NR	8E-6		0.112	[0.063-0.161] unit increase	Illumina [628922]	N
987	chr2	52706051	52706052	rs6545278	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	2p16.3	AC139712.2	rs6545278-?		8E-7	(EA, Inherited)	2.62	[1.76-3.90]	Illumina [2421290] (imputed)	N
987	chr2	52713608	52713609	rs13035397	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p16.3	FTH1P6, MIR4431	rs13035397-A	NR	4E-6	(number of awakenings after sleep onset)	0.1002	[0.058-0.143] unit increase	Affymetrix [7141204] (imputed)	N
987	chr2	52713806	52713807	rs1526687	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	2p16.3	LOC129656	rs1526687-T	NR	5E-6	(Continuous Variable)	0.04	[0.02-0.06] ug/L increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
987	chr2	52719290	52719291	rs62127626	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	2p16.3	AC139712.4	rs62127626-A	0.0057	7E-6		5.9639	[5.18-6.74]	Illumina [10736316] (imputed)	N
987	chr2	52728547	52728548	rs62127635	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p16.3		rs62127635-?	NR	4E-8				NR [~ 8900000] (imputed)	N
987	chr2	52735728	52735729	rs62127640	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p16.3	NA	rs62127640-G		4E-8		0.0111523	[0.0072-0.0151] unit increase	Illumina [13288253] (imputed)	N
987	chr2	52753908	52753909	rs58691539	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	2p16.3		rs58691539-T	0.91	2E-6		0.29	[0.17-0.41] unit decrease	Affymetrix, Illumina [6444471] (imputed)	N
987	chr2	52754897	52754898	rs34246098	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	2p16.3		rs34246098-?	NR	5E-8	(Colorectal polyp)	1.33	[1.16-1.53]	Illumina [NR] (imputed)	N
988	chr2	52856630	52856631	rs11687719	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	2p16.2	NR	rs11687719-G	NR	2E-6		1.182	NR	Illumina [at least 560000] (imputed)	N
988	chr2	52886030	52886031	rs13419069	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	2p16.2		rs13419069-G	0.3134	7E-6	(East Asian)	1.07	[1.04-1.10]	Affymetrix, Illumina [up to 47000000] (imputed)	N
988	chr2	52934599	52934600	rs350785	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p16.2	GPR75-ASB3, ASB3	rs350785-T		2E-15		0.0106	[0.0081-0.0131] unit increase	Affymetrix [13304133] (imputed)	N
988	chr2	52949317	52949318	rs1349882	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2p16.2	intergenic	rs1349882-T	0.395	5E-6		0.092	[0.053-0.131] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
989	chr2	52976278	52976279	rs148034142	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	2p16.2		rs148034142-C	0.993	2E-6		0.546	[0.429-0.695]	Affymetrix, Illumina [NR] (imputed)	N
989	chr2	52983772	52983773	rs350729	25562107	Israel E	2015-03-01	Am J Respir Crit Care Med	Genome-wide association study of short-acting ?2-agonists. A novel genome-wide significant locus on chromosome 2 near ASB3.	Bronchodilator response in asthma	724 European ancestry individuals	439 European ancestry individuals	2p16.2	ASB3, SOCS, JUND, CEBPB	rs350729-?	NR	2E-10		2.26	[NR] unit decrease	Affymetrix [444088]	N
989	chr2	53007397	53007398	rs13420733	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2p16.2	MIR4431	rs13420733-A	0.3807	1E-8		0.0595	[0.039-0.08] unit increase	NR [9744772] (imputed)	N
989	chr2	53012924	53012925	rs71411601	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	2p16.2		rs71411601-C	0.011795	2E-7		2.7862916	NR	Affymetrix [7846216] (imputed)	N
989	chr2	53023303	53023304	rs785293	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2p16.2	AC010967.2, GPR75-ASB3	rs785293-A	0.57	3E-9		0.006	[0.004-0.008] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
989	chr2	53025756	53025757	rs10189186	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2p16.2	AC010967.2	rs10189186-A	0.53	4E-10		0.1893	[0.13-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
990	chr2	53105035	53105036	rs76455983	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	2p16.2	intergenic	rs76455983-?	NR	3E-8		1.5	NR unit increase	Illumina [> 13000000] (imputed)	N
990	chr2	53106719	53106720	rs36130286	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.2	NR	rs36130286-?	NR	1E-31				Affymetrix [NR]	N
991	chr2	53226694	53226695	rs7573615	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.2	Intergenic	rs7573615-T	0.542	5E-6	(AA)	0.014	unit decrease	Illumina [NR] (imputed)	N
991	chr2	53237319	53237320	rs1160297	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	2p16.2	intergenic	rs1160297-?	0.43	1E-6	(Hgb)			Affymetrix [70897]	N
991	chr2	53266128	53266129	rs2357013	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	2p16.2	intergenic	rs2357013-?	0.45	6E-6	(Hgb)			Affymetrix [70897]	N
991	chr2	53313467	53313468	rs73933942	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p16.2		rs73933942-C	NR	2E-7	(sleep onset, weekdays)	0.4007	[0.25-0.55] unit decrease	Affymetrix [7141204] (imputed)	N
991	chr2	53327567	53327568	rs17044107	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	2p16.2	NR	rs17044107-T	NR	9E-6		1.3496	NR	Illumina [at least 560000] (imputed)	N
992	chr2	53389930	53389931	rs138007415	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p16.2	Intergenic	rs138007415-T	NR	9E-6		0.100511	[0.056-0.145] unit decrease	Illumina [13520550] (imputed)	N
992	chr2	53397047	53397048	rs9309245	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	2p16.2	ASB3	rs9309245-G	0.168	1E-8	(Japanese)	1.1	[1.07-1.14]	Illumina [7521072] (imputed)	N
992	chr2	53444392	53444393	rs112072646	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	2p16.2	NR	rs112072646-G		6E-7		0.4286	[0.26-0.6] SD units decrease	NR [10700000] (imputed)	N
993	chr2	53484039	53484040	rs113884973	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2p16.2	Intergenic	rs113884973-C	0.008	8E-6	(liability model)	0.43	[0.23-0.63] unit increase	NR [19725427] (imputed)	N
993	chr2	53493758	53493758	rs200848948	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	2p16.2	intergenic	rs200848948-G	0.464	4E-7		0.7149	[0.44-0.99] unit increase	Illumina [at least 4683137] (imputed)	N
993	chr2	53502774	53502775	rs996712	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p16.2	ASB3	rs996712-G	0.34	8E-6	(Free T3 )	0.02	[NR] pg/mL increase	Illumina [899892]	N
993	chr2	53536582	53536583	rs75101983	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.2	NR	rs75101983-?	NR	1E-9	(Ep-CAM)	1.43695	[0.98-1.9] unit increase	Illumina [11901634] (imputed)	N
994	chr2	53650294	53650295	rs115234772	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p16.2	ASB3, ERLEC1, GPR75	rs115234772-?	NR	1E-11	(African)			Affymetrix, Illumina [18800000] (imputed)	N
994	chr2	53650294	53650295	rs115234772	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2p16.2	ASB3, ERLEC1, GPR75	rs115234772-A	0.9862	2E-9	(African)	8.498	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
994	chr2	53701323	53701324	rs903227	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	2p16.2	NR	rs903227-?	NR	4E-6		2.3474	[1.35-3.34] unit decrease	Illumina [5779266] (imputed)	N
994	chr2	53701323	53701324	rs903227	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	2p16.2	NR	rs903227-?	NR	4E-6		2.3474	[1.35-3.34] unit decrease	Illumina [5779266] (imputed)	N
994	chr2	53725493	53725494	rs114616821	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.2	NR	rs114616821-C	0.02962	3E-8	(C11orf54)	0.2068	NR unit increase	Illumina [1671387] (imputed)	N
994	chr2	53725766	53725767	rs10193431	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.2		rs10193431-T	0.5255	4E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
994	chr2	53736361	53736362	rs4672458	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.2	ASB3	rs4672458-C	0.5236000000000001	2E-10		1.0226527		Affymetrix [11880941] (imputed)	N
995	chr2	53755758	53755759	rs12468965	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p16.2	ASB3	rs12468965-G	0.04	1E-7		0.5067	[0.32-0.69] unit increase	Illumina [~ 9000000] (imputed)	N
995	chr2	53756541	53756542	rs56148675	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	2p16.2	intergenic	rs56148675-T	0.942	5E-6		0.076	[0.043-0.109] unit decrease	Illumina [6150213] (imputed)	N
995	chr2	53782558	53782559	rs13407662	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	2p16.2	intergenic	rs13407662-T	0.04	5E-8	(SVD)	1.95	[1.53-2.48]	Affymetrix, Illumina [NR] (imputed)	N
995	chr2	53784923	53784924	rs73934724	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2p16.2	intergenic	rs73934724-?	NR	4E-7	(AA)	0.174	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
995	chr2	53799431	53799432	rs12997061	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ASB3	rs12997061-?	NR	2E-9	(female)	1.24242	[NR] unit decrease	Affymetrix [NR] (imputed)	N
995	chr2	53827685	53827686	rs76645968	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	2p16.2	ASB3	rs76645968-G	0.977	2E-7		0.073	[0.046-0.1] unit increase	Affymetrix [up to 73355677] (imputed)	N
995	chr2	53836077	53836078	rs6733971	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	2p16.2	ASB3	rs6733971-?	NR	1E-7	(AA)			Illumina [NR] (imputed)	N
995	chr2	53838837	53838838	rs1011275	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	2p16.2		rs1011275-G	0.2393	2E-6		4.804	z score increase	Illumina [7275796] (imputed)	N
995	chr2	53841842	53841843	rs114635257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs114635257-?	NR	2E-8				NR [~ 8900000] (imputed)	N
995	chr2	53861388	53861389	rs59428052	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.2	GPR75-ASB3	rs59428052-A	0.851083	1E-8		0.0114661	[0.0075-0.0154] unit increase	Affymetrix [12370749]	N
995	chr2	53861388	53861389	rs59428052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.2	NR	rs59428052-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
995	chr2	53861388	53861389	rs59428052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.2		rs59428052-?	NR	1E-11				NR [~ 8900000] (imputed)	N
996	chr2	53875972	53875973	rs74181220	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs74181220-?	NR	5E-11		0.0176037	[0.012-0.023] unit increase	Affymetrix [20259828] (imputed)	N
996	chr2	53920046	53920047	rs113798704	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.2	NR	rs113798704-?	NR	2E-9	(Ep-CAM)	1.51149	[1.02-2.01] unit increase	Illumina [11901634] (imputed)	N
996	chr2	53944812	53944813	rs766075	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p16.2	ERLEC1	rs766075-G	0.83859375	2E-7	(ERLEC1, 8957_72_3)	0.16511682	[0.1-0.23] unit increase	Illumina [> 1000000] (imputed)	N
996	chr2	53952461	53952462	rs376874342	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2p16.2		rs376874342-?	NR	5E-6		0.9412175	[0.54-1.34] unit increase	Illumina [9842460] (imputed)	N
996	chr2	53958918	53958919	rs58359565	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p16.2	ERLEC1	rs58359565-A	0.219	2E-12	(Endoplasmic reticulum lectin 1, ERLEC1.8957.72.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
996	chr2	53960228	53960229	rs114272138	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.2	NR	rs114272138-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
996	chr2	53964505	53964506	rs10490468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs10490468-G	0.330729	2E-12		0.016509254	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
996	chr2	53964505	53964506	rs10490468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs10490468-G	0.283693	3E-18				Affymetrix, Illumina [24558453] (imputed)	N
996	chr2	53964505	53964506	rs10490468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p16.2	NR	rs10490468-G	0.329582	2E-19		0.017627	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs78694551-G	0.270799	1E-32		0.029678984	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs78694551-G	0.270639	6E-18		0.021754859	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs78694551-G	0.270816	2E-14		0.0187545	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs78694551-G	0.270864	4E-12		0.017178921	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs78694551-A	0.740789	1E-40				Affymetrix, Illumina [22063850] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p16.2	NR	rs78694551-A	0.73204	7E-44		0.029479	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p16.2	NR	rs78694551-G	0.268073	1E-23		0.020553	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs78694551-G	0.212802	1E-12				Affymetrix, Illumina [20825802] (imputed)	N
996	chr2	53978812	53978813	rs78694551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p16.2	NR	rs78694551-G	0.270093	3E-15		0.017098	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
996	chr2	53978812	53978813	rs78694551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p16.2		rs78694551-?	NR	3E-35				NR [~ 8900000] (imputed)	N
996	chr2	53978812	53978813	rs78694551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.2		rs78694551-?	NR	6E-11				NR [~ 8900000] (imputed)	N
996	chr2	53984822	53984823	rs2111622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p16.2	ASB3, GPR75-ASB3	rs2111622-G	NR	8E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
996	chr2	53984822	53984823	rs2111622	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p16.2	ASB3, GPR75-ASB3	rs2111622-G	NR	2E-6				Affymetrix, Illumina [NR] (imputed)	N
996	chr2	53986697	53986698	rs111607747	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PA2G4	5,361 Icelandic ancestry individuals	NA	2p16.2		rs111607747-T	0.2427	1E-28		0.239063	[0.2-0.28] unit decrease	Illumina [7506463] (imputed)	N
996	chr2	53993037	53993066	rs148978228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p16.2		rs148978228-T	NR	2E-12		0.0202	[0.015-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
996	chr2	53993037	53993066	rs148978228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p16.2		rs148978228-T	NR	1E-10		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
996	chr2	53996919	53996920	rs59689026	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p16.2	CHAC2	rs59689026-A	NR	7E-6	(AA)			Illumina [up to 11995908] (imputed)	N
996	chr2	53996919	53996920	rs59689026	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p16.2	CHAC2	rs59689026-A	NR	7E-6				Illumina [up to 11995908] (imputed)	N
997	chr2	54002502	54002503	rs2692530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p16.2		rs2692530-A	NR	5E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
997	chr2	54002502	54002503	rs2692530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p16.2		rs2692530-A	NR	2E-8		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
997	chr2	54002502	54002503	rs2692530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs2692530-A	0.296788	1E-14				Affymetrix, Illumina [23472807] (imputed)	N
997	chr2	54003012	54003013	rs2542582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs2542582-G	0.289787	4E-21				Affymetrix, Illumina [24246363] (imputed)	N
997	chr2	54003012	54003013	rs2542582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs2542582-G	0.285195	5E-15				Affymetrix, Illumina [24653286] (imputed)	N
997	chr2	54003012	54003013	rs2542582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p16.2	NR	rs2542582-G	0.327374	1E-16		0.016324	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
997	chr2	54007170	54007171	rs2692533	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs2692533-C	0.331385	8E-12		0.016038131	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54010900	54010901	rs147445912	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	2p16.2		rs147445912-C	0.977719	7E-6		0.0233659	[0.0061-0.0406] unit decrease	Illumina [7666802] (imputed)	N
997	chr2	54020142	54020142	rs572243775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p16.2	ASB3, ERLEC1, GPR75-ASB3	rs572243775-CA	0.307764	2E-18		0.02227335	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54020142	54020142	rs572243775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p16.2	ASB3, ERLEC1, GPR75-ASB3	rs572243775-CA	0.30773	3E-15		0.019951861	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54020142	54020142	rs572243775	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p16.2	ASB3, ERLEC1, GPR75-ASB3	rs572243775-CA	0.307739	2E-16		0.020797752	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54025009	54025009	rs150175603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p16.2		rs150175603-AT	NR	2E-8		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
997	chr2	54035373	54035374	rs2692519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p16.2	ASB3, ERLEC1, GPR75-ASB3	rs2692519-G	0.331393	5E-17		0.019931132	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54035507	54035508	rs2287345	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p16.2		rs2287345-G	0.9324	4E-10		0.19181995	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
997	chr2	54039564	54039565	rs2287347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p16.2		rs2287347-G	0.229315	3E-10		0.0201967	[0.014-0.026] unit decrease	Illumina [13479924] (imputed)	N
997	chr2	54039564	54039565	rs2287347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.2		rs2287347-G	NR	2E-12		0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
997	chr2	54039812	54039813	rs2287348	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	2p16.2		rs2287348-?	NR	3E-8		0.0137	NR unit decrease	NR [5460735] (imputed)	N
997	chr2	54039812	54039813	rs2287348	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	2p16.2	ASB3	rs2287348-T	0.16	6E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [at least 8111819] (imputed)	N
997	chr2	54043141	54043142	rs142865135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs142865135-?	NR	9E-12				NR [~ 8900000] (imputed)	N
997	chr2	54046645	54046646	rs2542573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p16.2	NR	rs2542573-C	0.330988	2E-13		0.014819	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
997	chr2	54048424	54048424	rs573158838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs573158838-CT	0.184587	5E-10		0.017835751	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr2	54053871	54053872	rs698853	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs698853-G	0.276124	2E-12		0.017353805	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
997	chr2	54057362	54057363	rs7567262	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	2p16.2	ASB3	rs7567262-T	NR	3E-7		0.81816	[0.51-1.13] unit increase	NR [9955952] (imputed)	N
997	chr2	54057904	54057904	rs753541202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p16.2	ASB3, GPR75-ASB3	rs753541202-AT	0.177216	5E-13		0.021124683	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
997	chr2	54075489	54075490	rs113637042	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.2	NR	rs113637042-?	NR	2E-9	(Ep-CAM)	1.51284	[1.02-2] unit increase	Illumina [11901634] (imputed)	N
998	chr2	54161362	54161363	rs10208649	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p16.2	PSME4	rs10208649-C	0.013	5E-12	(Japanese)	0.111	[0.08-0.142] unit decrease	Illumina [6108953] (imputed)	N
998	chr2	54170338	54170339	rs11892759	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs11892759-?	NR	6E-18		0.0264782	[0.02-0.033] unit increase	Affymetrix [20259828] (imputed)	N
998	chr2	54176732	54176733	rs115660490	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs115660490-?	NR	3E-24		0.0425566	[0.034-0.051] unit increase	Affymetrix [20259828] (imputed)	N
998	chr2	54193192	54193193	rs805343	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p16.2	PSME4	rs805343-T	0.475	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
998	chr2	54194430	54194431	rs2909459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p16.2		rs2909459-T	NR	4E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
998	chr2	54203128	54203129	rs115966727	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2p16.2		rs115966727-?	NR	7E-6		0.9028798	[0.51-1.29] unit increase	Illumina [9842460] (imputed)	N
998	chr2	54215324	54215325	rs138061710	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.2	NR	rs138061710-?	NR	2E-9	(Ep-CAM)	1.50511	[1.01-2] unit increase	Illumina [11901634] (imputed)	N
998	chr2	54215897	54215898	rs142834685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs142834685-?	NR	5E-24				NR [~ 8900000] (imputed)	N
998	chr2	54222164	54222165	rs7591431	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs7591431-?	NR	1E-24		0.0426333	[0.034-0.051] unit increase	Affymetrix [20259828] (imputed)	N
998	chr2	54223524	54223525	rs6746965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.2		rs6746965-C	NR	7E-13		0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
998	chr2	54227273	54227274	rs56302494	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs56302494-?	NR	1E-12		0.0154372	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
998	chr2	54252824	54252825	rs6714450	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.2	NR	rs6714450-G	0.292	7E-9		0.00687877	[0.0046-0.0092] unit decrease	NR [9732723] (imputed)	N
999	chr2	54275161	54275162	rs13414393	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.2	PSME4, ACYP2	rs13414393-C	0.4595	6E-9		1.0221416		Affymetrix [11880941] (imputed)	N
999	chr2	54308996	54308997	rs55930424	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.2		rs55930424-?	NR	7E-10				NR [~ 8900000] (imputed)	N
999	chr2	54319672	54319673	rs72800733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs72800733-?	NR	4E-10				NR [~ 8900000] (imputed)	N
999	chr2	54325266	54325267	rs143491612	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p16.2		rs143491612-A	0.011064	4E-12		0.106099	[0.076-0.136] unit decrease	Illumina [13479178] (imputed)	N
999	chr2	54330359	54330360	rs10189970	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.2	NR	rs10189970-G	0.02265	2E-8	(PSMD1)	0.059	NR unit decrease	Illumina [1671387] (imputed)	N
999	chr2	54335443	54335444	rs2287644	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	ACYP2	rs2287644-G	0.740832	8E-10		0.0130684	[0.0089-0.0172] unit increase	NR [13737936] (imputed)	N
999	chr2	54342954	54342955	rs2287641	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	2p16.2	NR	54342955-A		9E-7		0.1138	[0.068-0.159] unit increase	Illumina [at least 4916924] (imputed)	N
999	chr2	54343107	54343108	rs9808326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACYP2	5,362 Icelandic ancestry individuals	NA	2p16.2		rs9808326-G	0.4783	2E-44		0.242694	[0.21-0.28] unit decrease	Illumina [7506463] (imputed)	N
999	chr2	54343107	54343108	rs9808326	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p16.2	ACYP2	rs9808326-C	0.5225	5E-29	(ACYP2, 12812_25_3)	0.2583201	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
999	chr2	54347749	54347750	rs1559040	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2p16.2	ACYP2	rs1559040-?	0.11	4E-8	(Recessive)	1.54	[1.32-1.79]	Affymetrix [319222]	N
999	chr2	54354926	54354927	rs1075265	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	2p16.2	NR	rs1075265-G	0.48	1E-8		0.025	[0.016-0.034] unit decrease	Affymetrix [at least 12428592] (imputed)	N
999	chr2	54354926	54354927	rs1075265	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	2p16.2	PSME4, ACYP2	rs1075265-G	0.52	4E-8		1.0526316	[1.03-1.07]	NR [16760980] (imputed)	N
999	chr2	54354926	54354927	rs1075265	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	2p16.2	PSME4, ACYP2	rs1075265-C	0.48	4E-8		0.025	[0.017-0.033] unit decrease	NR [16760980] (imputed)	N
1000	chr2	54425053	54425053	rs768145624	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		ACYP2	rs768145624-?	NR	8E-7	(male)	1.46833	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1000	chr2	54435841	54435842	rs68181474	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs68181474-?	NR	2E-22		0.0239299	[0.019-0.029] unit increase	Affymetrix [20259828] (imputed)	N
1000	chr2	54454558	54454559	rs138233937	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	2p16.2		rs138233937-T	NR	4E-7		4.291846	NR	Affymetrix [7846216] (imputed)	N
1000	chr2	54475865	54475866	rs11125529	23535734	Codd V	2013-04-01	Nat Genet	Identification of seven loci affecting mean telomere length and their association with disease.	Telomere length	37,684 European ancestry individuals	10,739 European ancestry individuals	2p16.2	ACYP2	rs11125529-C	0.858	8E-10		0.056	[0.036-0.076] unit decrease	Affymetrix, Illumina [2362330]	N
1000	chr2	54482552	54482553	rs17189743	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	2p16.2	NR	rs17189743-A	0.032	9E-7		0.041	unit increase	Illumina [242289]	N
1000	chr2	54482703	54482703	rs754017156	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	2p16.2	ACYP2	rs754017156-?	0.165048	8E-8		0.047092	[0.03-0.064] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1000	chr2	54484275	54484276	rs1351880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs1351880-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1000	chr2	54485681	54485682	rs11890390	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	2p16.2	ACYP2	rs11890390-C	NR	5E-10		0.048	NR unit decrease	Illumina [6407959] (imputed)	N
1000	chr2	54504734	54504735	rs843750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.2		rs843750-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1001	chr2	54536166	54536167	rs11674614	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 213)	19,670 European ancestry individuals	NA	2p16.2		rs11674614-?	NR	6E-9				NR [9705931] (imputed)	N
1001	chr2	54558406	54558407	rs79551394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs79551394-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1001	chr2	54568286	54568287	rs10196726	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	C2orf73	rs10196726-A	0.233493	3E-15		0.0174816	[0.013-0.022] unit increase	NR [13737936] (imputed)	N
1001	chr2	54571853	54571853	rs112578436	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p16.2	C2orf73	rs112578436-CCCGT	0.77	1E-9		0.406	[0.27-0.54] unit increase	Affymetrix [NR] (imputed)	N
1001	chr2	54572591	54572592	rs10865282	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p16.2	C2orf73	rs10865282-A	0.775	3E-11		0.0024	[0.0016-0.0032] unit increase	Affymetrix [NR] (imputed)	N
1001	chr2	54574343	54574344	rs941352	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p16.2		rs941352-A	NR	2E-18		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1001	chr2	54574941	54574942	rs1405833	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p16.2	C2orf73	rs1405833-G	0.2733	5E-10		6.216	NR z score decrease	Illumina [26237160] (imputed)	N
1001	chr2	54577335	54577336	rs5831298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p16.2		rs5831298-G	NR	8E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1001	chr2	54581355	54581356	rs1527649	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2p16.2		rs1527649-C	0.200371	1E-8		0.0251912	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1001	chr2	54581355	54581356	rs1527649	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p16.2	C2orf73	rs1527649-?	NR	2E-9				Affymetrix, Illumina [at least 5248638] (imputed)	N
1001	chr2	54594874	54594875	rs4459768	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p16.2	C2orf73	rs4459768-A	0.7961	4E-6	(EA)	0.002	[0.0012-0.0028] unit increase	Affymetrix [NR] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.2		rs79272390-T	0.14	3E-69		17.59	z score increase	Affymetrix [9061022] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.2		rs79272390-T	0.14	8E-26		10.5	z score increase	Affymetrix [9061022] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	2p16.2		rs79272390-T	0.14	4E-6				NR [13131314] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.2		rs79272390-T	0.14	8E-47		14.37	z score increase	Affymetrix [9061022] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.2	NR	rs79272390-T	0.154	1E-17				NR [9056863] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.2	NR	rs79272390-T	0.154	1E-17				NR [9056863] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2p16.2		rs79272390-?	NR	2E-20				NR [9705931] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p16.2	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs79272390-?		4E-8				NR [7428630] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p16.2	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs79272390-?		9E-12				NR [7428630] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p16.2	C2orf73	rs79272390-?		5E-11				NR [7428630] (imputed)	N
1001	chr2	54615324	54615325	rs79272390	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p16.2	NR	rs79272390-T	0.1471	9E-14	(Inferior Parietal)	32.2699	[23.79-40.75] unit decrease	Affymetrix, Illumina [NR]	N
1001	chr2	54615324	54615325	rs79272390	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p16.2	NR	rs79272390-T	0.1467	1E-12	(Superior Parietal)	29.072517	[21.06-37.08] unit increase	Affymetrix, Illumina [NR]	N
1001	chr2	54656331	54656332	rs59072058	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs59072058-?	NR	2E-9		0.032991	[0.021-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
1002	chr2	54659203	54659204	rs74259971	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p16.2	SPTBN1	rs74259971-T	0.83	8E-9				Affymetrix, Illumina [8002429] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p16.2	SPTBN1	rs4233949-C	0.394889	1E-28		0.00260083	[0.0021-0.0031] unit increase	Affymetrix [13995440] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	SPTBN1	rs4233949-C	0.393126	1E-280		0.0693064	[0.066-0.073] unit increase	NR [13737936] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs4233949-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	2p16.2	SPTBN1	rs4233949-G	0.61	3E-14		1.03	[1.02-1.04]	Affymetrix, Illumina [2539801] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian ancestry cases, 227,116 European or East Asian ancestry controls	18,779 European, East Asian or other ancestry cases, 32,078 European, East Asian or other ancestry controls	2p16.2		rs4233949-G	0.6177	6E-7		1.04		Affymetrix, Illumina [2539801] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs4233949-?	NR	1E-300		0.0773373	[0.073-0.081] unit increase	Affymetrix [20259828] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs4233949-C	0.391456	2E-45	(men)	0.0732588	[0.063-0.083] unit increase	NR [17166351] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs4233949-C	0.391405	2E-110		0.0746329	[0.068-0.081] unit increase	NR [17166351] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs4233949-C	0.391361	1E-63	(women)	0.0772004	[0.068-0.086] unit increase	NR [17166351] (imputed)	N
1002	chr2	54659706	54659707	rs4233949	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2p16.2	SPTBN1	rs4233949-C	0.38	2E-18		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1002	chr2	54660455	54660456	rs4627617	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p16.2	SPTBN1	rs4627617-?	NR	8E-9		0.0979	[0.065-0.131] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1002	chr2	54660455	54660456	rs4627617	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p16.2	C2orf73, SPTBN1	rs4627617-G	0.8341	1E-9		0.1035	[0.067-0.14] unit increase	Affymetrix [~ 11900000] (imputed)	N
1002	chr2	54666170	54666171	rs150734345	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p16.2	Intergenic	rs150734345-T	NR	2E-6	(women)	0.530483	[0.31-0.75] unit decrease	Illumina [13520550] (imputed)	N
1002	chr2	54670517	54670518	rs4671217	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p16.2	SPTBN1	rs4671217-T	0.83	3E-9		0.101	[0.068-0.134] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1002	chr2	54683710	54683711	rs4305309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p16.2		rs4305309-C	NR	2E-21		0.0207	[0.016-0.025] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1002	chr2	54684397	54684398	rs76070960	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p16.2	SPTBN1	rs76070960-C	0.8315	1E-9		0.1106	[0.074-0.148] unit increase	Affymetrix [~ 11900000] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p16.2	NR	rs11898505-G	NR	1E-18		0.0221	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs11898505-?	NR	1E-313		0.0787181	[0.075-0.083] unit increase	Affymetrix [20259828] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2p16.2	SPTBN1	rs11898505-A	0.51501	3E-9		0.0491	[0.033-0.065] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p16.2	NR	rs11898505-A	0.3326	1E-8		0.0342	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	2p16.2	SPTBN1	rs11898505-A	0.37	2E-8		0.07	[0.05-0.09] unit increase	Illumina [11973598] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	2p16.2	SPTBN1	rs11898505-A	0.37	2E-13		0.09	[0.07-0.11] unit increase	Illumina [11973598] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	2p16.2	SPTBN1	rs11898505-A	0.36	2E-9	(female)	0.09	[0.07-0.11] unit increase	Illumina [11973598] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	730 East Asian ancestry individuals, 2,380 European ancestry individuals, 11,150 individuals	11,058 European ancestry individuals, 2,870 European and other ancestry individuals, 21,439 individuals	2p16.2	SPTBN1	rs11898505-G	0.64	4E-13	(BUA)	0.06	[0.05-0.08] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	24430505	Moayyeri A	2014-01-14	Hum Mol Genet	Genetic determinants of heel bone properties: genome-wide association meta-analysis and replication in the GEFOS/GENOMOS consortium.	Bone properties (heel)	2,483 East Asian ancestry individuals, 1,885 European ancestry individuals, 11,146 individuals	10,074 European ancestry individuals, 2,870 European and other ancestry individuals, 21,434 individuals	2p16.2	SPTBN1	rs11898505-G	0.65	6E-6	(VOS)	0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [up to 2609590] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (spine)	19,195 European ancestry individuals	NA	2p16.2	SPTBN1	rs11898505-A	0.34	2E-8		0.07	[0.05-0.09] s.d. increase	Affymetrix, Illumina [2543686] (imputed)	N
1002	chr2	54684556	54684557	rs11898505	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	2p16.2	SPTBN1	rs11898505-G	0.68	4E-6		0.07	[0.04-0.10] s.d. decrease	Illumina [305051]	N
1002	chr2	54684556	54684557	rs11898505	18445777	Styrkarsdottir U	2008-04-29	N Engl J Med	Multiple genetic loci for bone mineral density and fractures.	Bone mineral density (spine)	5,861 European ancestry individuals	7,925 European ancestry individuals	2p16.2	SPTBN1	rs11898505-G	0.67	8E-7		0.08	[0.05-0.11] s.d. decrease	Illumina [301019]	N
1002	chr2	54684665	54684666	rs4024576	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p16.2	SPTBN1	rs4024576-C	0.36	6E-19		8.89	z-score increase	Affymetrix [4311822] (imputed)	N
1002	chr2	54687522	54687523	rs4671934	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs4671934-?	NR	1E-18		0.017815	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1002	chr2	54717712	54717713	rs17045917	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p16.2	SPTBN1	rs17045917-?		4E-7				Illumina [4322238] (imputed)	N
1002	chr2	54718180	54718181	rs4557020	22685421	Fan Q	2012-06-07	PLoS Genet	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Chinese ancestry individuals, 2,155 Malay ancestry individuals	NA	2p16.2	SPTBN1	rs4557020-T	0.37	3E-7		0.12	[0.081-0.159] mm decrease	Illumina [456634]	N
1002	chr2	54719120	54719121	rs7600596	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	2p16.2	NR	rs7600596-A	NR	6E-7		0.00716372	[0.0043-0.01] unit decrease	Affymetrix [9740198] (imputed)	N
1002	chr2	54727794	54727795	rs6545412	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p16.2	NR	rs6545412-T	0.1538	2E-10		0.002016	[0.0014-0.0026] unit increase	Affymetrix [NR] (imputed)	N
1002	chr2	54727852	54727853	rs143138642	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	2p16.2		rs143138642-T	0.981182	5E-6		0.0356495	[0.016-0.056] unit decrease	Illumina [7666802] (imputed)	N
1002	chr2	54728275	54728276	rs7588499	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	2p16.2	SPTBN1	rs7588499-?	0.49	2E-7		13.76	unit increase	Illumina [120975] (imputed)	N
1002	chr2	54741019	54741020	rs4671222	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p16.2	SPTBN1	rs4671222-C	0.265613	8E-16	(86 ms)	0.0493538	[0.037-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1002	chr2	54741019	54741020	rs4671222	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p16.2	SPTBN1	rs4671222-C	0.265613	2E-15	(88 ms)	0.0483647	[0.036-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1002	chr2	54741019	54741020	rs4671222	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p16.2	SPTBN1	rs4671222-C	0.265613	2E-11	(78 ms)	0.0414901	[0.029-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1002	chr2	54741019	54741020	rs4671222	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p16.2	SPTBN1	rs4671222-C	0.265613	1E-11	(76 ms)	0.041337	[0.029-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1002	chr2	54760819	54760820	rs4514918	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	2p16.2	SPTBN1	rs4514918-C	0.39	2E-11		6.72	NR z score decrease	Illumina [at least 900015] (imputed)	N
1002	chr2	54765173	54765174	rs1112919	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p16.2		rs1112919-A	NR	8E-6		4.4753327	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1002	chr2	54768660	54768661	rs62134669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p16.2		rs62134669-C	NR	2E-11		0.0209	[0.015-0.027] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p16.2		rs75475627-G	NR	1E-14		0.0218	[0.016-0.027] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p16.2		rs75475627-G	NR	3E-13		0.0244	[0.018-0.031] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p16.2	SPTBN1	rs75475627-G	0.076247	2E-15		0.033558182	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p16.2	SPTBN1	rs75475627-G	0.076245	3E-16		0.034688927	[0.026-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2p16.2	SPTBN1	rs75475627-G	0.076202	4E-11		0.028234074	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs75475627-G	0.133559	2E-20				Affymetrix, Illumina [24649327] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p16.2	NR	rs75475627-G	0.076568	2E-20		0.032813	[0.026-0.04] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs75475627-G	0.11172	4E-18				Affymetrix, Illumina [23114412] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p16.2	NR	rs75475627-G	0.076758	4E-19		0.033029	[0.026-0.04] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p16.2	NR	rs75475627-G	0.076659	2E-11		0.02413	[0.017-0.031] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	SPTBN1	rs75475627-C	0.928443	4E-11		0.0265001	[0.019-0.034] unit increase	NR [13737936] (imputed)	N
1002	chr2	54787591	54787592	rs75475627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p16.2		rs75475627-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1003	chr2	54795928	54795929	rs7602992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p16.2	NR	rs7602992-G	0.197765	4E-10		0.015543	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1003	chr2	54798730	54798731	rs376087404	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 56)	19,670 European ancestry individuals	NA	2p16.2		rs376087404-?	NR	2E-8				NR [9705931] (imputed)	N
1003	chr2	54798843	54798844	rs67079536	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs67079536-?	NR	3E-49		0.0616926	[0.053-0.07] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54799173	54799174	rs10181201	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p16.2	C2orf73	rs10181201-G	0.078	7E-8		0.129	[-0.12972-0.38772] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1003	chr2	54799598	54799599	rs10205410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p16.2		rs10205410-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1003	chr2	54803210	54803211	rs28517733	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs28517733-?	NR	9E-29		0.038974	[0.032-0.046] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54804692	54804693	rs10180713	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs10180713-?	NR	3E-121		0.0527968	[0.048-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54810491	54810492	rs7586066	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p16.2	C2orf73	rs7586066-A	0.848	1E-12		0.102	[-0.02932-0.23332] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1003	chr2	54812567	54812568	rs57988484	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p16.2	SPTBN1	rs57988484-T	0.17801	8E-15		0.025053922	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1003	chr2	54817682	54817683	rs6545432	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	2p16.2	SPTBN1	rs6545432-G	48.36	5E-11	(additive)	0.97	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1003	chr2	54819525	54819525	rs11402836	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs11402836-?	NR	3E-18		0.0200728	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54824814	54824815	rs4519566	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p16.2	SPTBN1	rs4519566-G	0.79	5E-12		0.54	[0.38-0.7] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1003	chr2	54834379	54834380	rs6740893	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	2p16.2	NR	rs6740893-A	0.23	9E-7	(EA)	0.071	[0.042-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1003	chr2	54838612	54838613	rs10193877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p16.2	SPTBN1	rs10193877-C	0.209189	5E-10		0.016899467	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1003	chr2	54838612	54838613	rs10193877	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.2	NR	rs10193877-C	0.19953	7E-11				Affymetrix, Illumina [24332387] (imputed)	N
1003	chr2	54847613	54847613	rs34138479	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs34138479-?	NR	3E-122		0.0524368	[0.048-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54847613	54847613	rs34138479	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs34138479-A	0.271747	8E-20	(women)	0.0456176	[0.036-0.056] unit decrease	NR [17166351] (imputed)	N
1003	chr2	54847613	54847613	rs34138479	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs34138479-A	0.270653	2E-44		0.0517512	[0.044-0.059] unit decrease	NR [17166351] (imputed)	N
1003	chr2	54847613	54847613	rs34138479	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p16.2	SPTBN1	rs34138479-A	0.2694	8E-26	(men)	0.058837	[0.048-0.07] unit decrease	NR [17166351] (imputed)	N
1003	chr2	54848727	54848728	rs12713274	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	2p16.2		rs12713274-A	0.76	3E-9		1.18		NR [NR] (imputed)	N
1003	chr2	54855136	54855137	rs2971887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.2		rs2971887-?	NR	1E-141				NR [~ 8900000] (imputed)	N
1003	chr2	54855453	54855454	rs17046036	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p16.2	C2orf73	rs17046036-A	0.122	2E-15		0.16	[0.021-0.299] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1003	chr2	54858510	54858511	rs1052788	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p16.2	SPTBN1	rs1052788-?	NR	3E-10		0.019223198	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
1003	chr2	54862002	54862003	rs2941580	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	2p16.2		rs2941580-?	NR	2E-8		5.6586757	z score decrease	Affymetrix [NR] (imputed)	N
1003	chr2	54878168	54878169	rs2941593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p16.2	NR	rs2941593-T	NR	3E-10		0.0265	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr2	54881620	54881621	rs2941584	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (trabecular)	12,287 European ancestry individuals	2,987 individuals	2p16.2	SPTBN1	rs2941584-C	0.32	1E-7		0.06	[0.036-0.084] unit decrease	Affymetrix, Illumina [up to 37790451] (imputed)	N
1003	chr2	54881620	54881621	rs2941584	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	2p16.2	SPTBN1	rs2941584-C	0.32	2E-6		0.062	[0.037-0.087] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
1003	chr2	54882380	54882381	rs2271329	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p16.2	SPTBN1	rs2271329-G	0.7994	3E-12		0.5804	[0.42-0.74] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1003	chr2	54882380	54882381	rs2271329	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	SPTBN1	rs2271329-G	0.808592	1E-13		0.0182739	[0.013-0.023] unit decrease	NR [13737936] (imputed)	N
1003	chr2	54885369	54885370	rs17416284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.2		rs17416284-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1003	chr2	54885639	54885640	rs2971880	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p16.2	SPTBN1	rs2971880-A	0.3728	9E-22		0.0024	[0.0018-0.003] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1003	chr2	54885639	54885640	rs2971880	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2p16.2	SPTBN1	rs2971880-A	0.37	5E-6		1.0372	[1.0211-1.0536]	Affymetrix, Illumina [9585923] (imputed)	N
1003	chr2	54888074	54888075	rs17046097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p16.2	NR	rs17046097-A	0.248233	2E-12		0.015045	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1003	chr2	54888532	54888533	rs2971879	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.2	SPTBN1	rs2971879-T	0.276329	2E-69		0.042132	[0.037-0.047] unit decrease	NR [13737936] (imputed)	N
1003	chr2	54895934	54895935	rs63629260	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.2		rs63629260-?	NR	8E-20		0.139899	[0.11-0.17] unit decrease	Affymetrix [20259828] (imputed)	N
1003	chr2	54900898	54900899	rs142874192	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p16.2	SPTBN1	rs142874192-C	0.9565	1E-8		0.0589	[0.039-0.079] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1003	chr2	54900898	54900899	rs142874192	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p16.2	SPTBN1	rs142874192-C	0.9435	7E-6	(East Asian)	0.0571	[0.032-0.082] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1003	chr2	54900898	54900899	rs142874192	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p16.2	NR	rs142874192-C	0.0485	7E-7	(men)	0.072	[0.044-0.1] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1003	chr2	54917411	54917412	rs147692222	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	2p16.2	NR	rs147692222-?	NR	4E-6		6.058	[0.52-11.6] unit increase	Illumina [at least 560000] (imputed)	N
1004	chr2	54920967	54920968	rs168505	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p16.2	SPTBN1	rs168505-T	0.396	4E-20		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1004	chr2	54923765	54923766	rs354225	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.2	NR	rs354225-G	NR	3E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1004	chr2	54925330	54925331	rs181347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p16.2	NR	rs181347-T	0.341313	3E-14		0.017927468	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr2	54925330	54925331	rs181347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p16.2	NR	rs181347-T	0.341314	3E-11		0.01576007	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr2	54925330	54925331	rs181347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p16.2		rs181347-T	0.341355	2E-14		0.018038696	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr2	54925330	54925331	rs181347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p16.2		rs181347-T	0.341354	2E-12		0.016474212	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr2	54941111	54941112	rs189548	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2p16.1	EML6	rs189548-A	0.7302	3E-9		0.0123	[0.0084-0.0162] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1004	chr2	54942156	54942157	rs173303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EML6	rs173303-A	NR	2E-8		0.0173242	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1004	chr2	54957708	54957709	rs78667279	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p16.1		rs78667279-A	0.00969	1E-8		0.7492	[0.49-1.01] unit decrease	Illumina [18189521] (imputed)	N
1004	chr2	54957708	54957709	rs78667279	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell %T cell	3,162 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p16.1		rs78667279-A	0.00975	1E-8		0.7401	[0.49-0.99] unit decrease	Illumina [18208347] (imputed)	N
1004	chr2	54959861	54959862	rs6545440	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p16.1	NR	rs6545440-T	0.190319	5E-10		0.0241742	[0.017-0.032] unit increase	NR [19129689] (imputed)	N
1004	chr2	54964293	54964294	rs354235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EML6	rs354235-T	NR	4E-9		0.0188577	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1004	chr2	54965333	54965334	rs568317811	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p16.1	EML6	rs568317811-T	6.51999999999986E-4	1E-9		0.26851755	[0.18-0.36] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p16.1	EML6	rs72806698-T	0.07	2E-7	(Japanese)	0.8036	[0.5-1.1] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p16.1	EML6	rs72806698-T	0.0665	1E-11	(Japanese)	0.7388	[0.53-0.95] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p16.1	EML6	rs72806698-T	0.0665	5E-6	(Japanese)	0.1232	[0.07-0.176] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p16.1	EML6	rs72806698-T	0.0665	2E-14	(East Asian)	0.6127	[0.46-0.77] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	2p16.1	EML6	rs72806698-?	NR	8E-12		0.05347	[0.038-0.069] unit increase novel	Illumina [6108953] (imputed)	N
1004	chr2	54969378	54969379	rs72806698	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	2p16.1	EML6	rs72806698-?	NR	5E-12		0.05354	[0.038-0.069] unit increase	Illumina [6108953] (imputed)	N
1004	chr2	54970477	54970478	rs72915529	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell %CD8+ T cell	3,162 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p16.1		rs72915529-A	0.01033	3E-9		0.7447	[0.5-0.99] unit decrease	Illumina [18208347] (imputed)	N
1004	chr2	54970942	54970943	rs354202	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2p16.1	EML6	rs354202-A	0.8982	3E-6		0.152	[0.088-0.216] unit decrease	Illumina [up to 38043574] (imputed)	N
1004	chr2	54970942	54970943	rs354202	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2p16.1	EML6	rs354202-A	0.8951	2E-7	(Subset)	0.1846	[0.12-0.25] unit decrease	Illumina [up to 38043574] (imputed)	N
1004	chr2	54970942	54970943	rs354202	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	2p16.1	EML6	rs354202-A	0.9	1E-8	(Subset)	0.2	[0.14-0.26] unit decrease	Illumina [up to 38043574] (imputed)	N
1004	chr2	54970942	54970943	rs354202	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	2p16.1	EML6	rs354202-A	0.89	3E-6		0.12	[0.061-0.179] unit decrease	Illumina [up to 38043574] (imputed)	N
1004	chr2	54973007	54973008	rs66624040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.1		rs66624040-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1004	chr2	54987959	54987969	rs200476039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2p16.1	EML6	rs200476039-A	0.0517	7E-10		0.05248104	[0.036-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	54987959	54987969	rs200476039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2p16.1	EML6	rs200476039-A	0.0516	3E-10		0.0538821	[0.037-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	54987959	54987969	rs200476039	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2p16.1	EML6	rs200476039-A	0.0516	5E-10		0.05302653	[0.036-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	54993997	54993998	rs17046310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2p16.1	EML6	rs17046310-T	0.0326	3E-9		0.05966194	[0.04-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	55013645	55013646	rs72917514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2p16.1	EML6	rs72917514-A	0.033	1E-10		0.06506803	[0.045-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	55013645	55013646	rs72917514	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2p16.1	EML6	rs72917514-A	0.033	1E-10		0.06477658	[0.045-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr2	55022397	55022398	rs186131752	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs186131752-?	NR	2E-12	(Ep-CAM)	2.02452	[1.46-2.59] unit increase	Illumina [11901634] (imputed)	N
1004	chr2	55023599	55023600	rs17046344	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p16.1	NR	rs17046344-A	0.0662	9E-11	(East Asian)	0.82	[0.57-1.07] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	55023599	55023600	rs17046344	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2p16.1	NR	rs17046344-A	0.0662	1E-13	(East Asian)	0.6608	[0.49-0.84] unit increase	Illumina [6200000] (imputed)	N
1004	chr2	55023599	55023600	rs17046344	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	2p16.1	EML6	rs17046344-?	NR	6E-9		0.04622	[0.031-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1004	chr2	55041321	55041322	rs17046380	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2p16.1	NR	rs17046380-T	0.816	2E-10	(East Asian)	0.0968	[0.067-0.127] unit decrease	Illumina [6200000] (imputed)	N
1004	chr2	55045483	55045484	rs2567975	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	2p16.1		rs2567975-?	NR	5E-8				NR [7857346] (imputed)	N
1005	chr2	55058508	55058509	rs11125548	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.1		rs11125548-?	NR	1E-50		0.0530099	[0.046-0.06] unit increase	Affymetrix [20259828] (imputed)	N
1005	chr2	55069822	55069823	rs17345611	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		EML6	rs17345611-?	NR	2E-8	(female)	0.195643	[NR] unit increase	Affymetrix [NR] (imputed)	N
1005	chr2	55081375	55081376	rs12713280	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	2p16.1	intergenic	rs12713280-T	NR	6E-6	(Risk)	0.123	[0.070-0.176] unit increase	Illumina [628922]	N
1005	chr2	55121929	55121930	rs998230	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p16.1	NR	rs998230-C	0.608052	3E-9		0.00473018	[0.0031-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
1005	chr2	55121929	55121930	rs998230	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p16.1	NR	rs998230-C	0.608052	9E-9		0.00517429	[0.0033-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1005	chr2	55144934	55144935	rs10496034	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	2p16.1	EML6	rs10496034-C	0.17	2E-6	(Asian, 25 years or older)	1.216	[1.122-1.318]	Affymetrix, Illumina [NR] (imputed)	N
1005	chr2	55156629	55156630	rs6726292	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	2p16.1	RTN4	rs6726292-G	0.73	1E-6		1.39	[1.22-1.59]	Illumina [457251]	N
1005	chr2	55157913	55157914	rs5010712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p16.1	NR	rs5010712-G	0.8124	3E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1005	chr2	55179005	55179006	rs7566508	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (parent-of-origin effect)	482 European ancestry trios, 19 European ancestry father-child pairs, 59 European ancestry mother-child pairs, 28 European ancestry affected children	NA	2p16.1	EML6	rs7566508-?	NR	1E-6				Illumina [NR]	N
1006	chr2	55186927	55186928	rs11125553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p16.1	EML6	rs11125553-T	0.366212	8E-23		0.023030134	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1006	chr2	55186927	55186928	rs11125553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs11125553-C	0.642599	9E-27				Affymetrix, Illumina [17210439] (imputed)	N
1006	chr2	55186927	55186928	rs11125553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p16.1	NR	rs11125553-C	0.633713	1E-28		0.022194	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1006	chr2	55189437	55189438	rs6745543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.1		rs6745543-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1006	chr2	55196955	55196956	rs2580764	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p16.1	EML6	rs2580764-A	0.3881	2E-11		0.02509536	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1006	chr2	55210604	55210605	rs17418675	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	FLJ31438	rs17418675-?	NR	9E-6	(trimethylamine N oxide)	0.15579896	[0.087-0.225] unit increase	Affymetrix [at least 2500000] (imputed)	N
1006	chr2	55212336	55212337	rs6545465	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p16.1	RTN4	rs6545465-C	0.806732	3E-9		0.01693151	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1006	chr2	55212336	55212337	rs6545465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs6545465-C	0.789422	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1006	chr2	55212336	55212337	rs6545465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p16.1	NR	rs6545465-C	0.806078	2E-13		0.016906	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1006	chr2	55238676	55238677	rs3806572	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	2p16.1	NR	rs3806572-A	0.292	8E-7		0.007	[0.0043-0.0097] unit decrease	NR [7666894] (imputed)	N
1006	chr2	55252213	55252214	rs13401937	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	2p16.1	NR	rs13401937-?	NR	9E-7		1.94	NR	Affymetrix [~ 18000000] (imputed)	N
1006	chr2	55271580	55271581	rs12479297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p16.1		rs12479297-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1006	chr2	55277640	55277641	rs6545468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.1		rs6545468-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1006	chr2	55279680	55279681	rs2920899	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p16.1	RTN4	rs2920899-T	0.7861	1E-9		0.1851	[0.13-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1006	chr2	55281900	55281901	rs7601895	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.1	RTN4	rs7601895-C	0.692223	4E-12		0.0103104	[0.0074-0.0132] unit increase	Affymetrix [12370749]	N
1006	chr2	55281900	55281901	rs7601895	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs7601895-?	NR	5E-16				Affymetrix [~ 8270000] (imputed)	N
1006	chr2	55281900	55281901	rs7601895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs7601895-?	NR	7E-15				NR [~ 8900000] (imputed)	N
1006	chr2	55281900	55281901	rs7601895	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.1	NA	rs7601895-C	0.6899	2E-16		0.0152	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1006	chr2	55282925	55282926	rs6757907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.1		rs6757907-A	NR	2E-12		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1006	chr2	55286680	55286681	rs7582359	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.1	NA	rs7582359-A	0.3294	2E-12		0.0128	[0.0093-0.0163] unit decrease	NR [~ 27400000] (imputed)	N
1006	chr2	55297352	55297353	rs2920879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p16.1	NR	rs2920879-C	0.596322	2E-13		0.014169	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1006	chr2	55297817	55297818	rs2920880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p16.1		rs2920880-T	NR	6E-9		0.0129	[0.0086-0.0172] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1006	chr2	55297817	55297818	rs2920880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p16.1	RTN4	rs2920880-T	0.593622	5E-13		0.016272485	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1006	chr2	55298153	55298154	rs13403422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p16.1		rs13403422-C	NR	8E-15		0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1006	chr2	55307864	55307865	rs2968821	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p16.1	RTN4, CLHC1	rs2968821-C	0.42	8E-7	(EA)	0.26	[0.16-0.36] unit increase	Illumina [up to 13042663] (imputed)	N
1007	chr2	55318115	55318116	rs2920861	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs2920861-A	0.0907	5E-8	(MTAG)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1007	chr2	55341366	55341367	rs2920844	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	2p16.1	RTN4	rs2920844-?	NR	1E-8		5.69	NR unit increase	Illumina [up to 1520000] (imputed)	N
1007	chr2	55341951	55341952	rs2968781	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Diastolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	2p16.1	intergenic	rs2968781-?	NR	2E-8		5.618	NR unit increase	Illumina [up to 1520000] (imputed)	N
1007	chr2	55354707	55354708	rs147948988	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs147948988-?	NR	2E-11	(Ep-CAM)	1.87016	[1.33-2.41] unit increase	Illumina [11901634] (imputed)	N
1007	chr2	55355945	55355946	rs11683711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs11683711-G	0.475187	2E-14				Affymetrix, Illumina [23472807] (imputed)	N
1007	chr2	55383426	55383427	rs7568777	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	2p16.1	NR	rs7568777-A	0.1858	1E-6		1.075	[1.04-1.11]	Affymetrix [7791636] (imputed)	N
1007	chr2	55418934	55418935	rs7588591	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	2p16.1	NR	rs7588591-?	NR	2E-6				NR [up to 8466825] (imputed)	N
1007	chr2	55439290	55439291	rs9309263	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.1		rs9309263-C	0.26	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr2	55475986	55475987	rs74910171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.1		rs74910171-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1008	chr2	55502512	55502513	rs146624211	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs146624211-?	NR	2E-10	(Ep-CAM)	1.72664	[1.2-2.26] unit increase	Illumina [11901634] (imputed)	N
1008	chr2	55505455	55505456	rs1437396	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	2p16.1	intergenic	rs1437396-T	0.235	6E-6	(EA)	1.25	NR (EA, German Sample)	Illumina [up to 10421983] (imputed)	N
1008	chr2	55505455	55505456	rs1437396	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	2p16.1	intergenic	rs1437396-T	0.112	2E-6	(AA)	1.56	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
1008	chr2	55505455	55505456	rs1437396	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	2p16.1	intergenic	rs1437396-T		1E-10				Illumina [up to 10421983] (imputed)	N
1008	chr2	55516089	55516090	rs1045613	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.1		rs1045613-T	0.21	8E-10		6.15	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr2	55516322	55516323	rs2589113	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p16.1	NR	rs2589113-?	NR	5E-6		0.03626905	[0.021-0.052] unit decrease	Illumina [34656550] (imputed)	N
1008	chr2	55516322	55516323	rs2589113	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2p16.1	CCDC88A	rs2589113-T	0.48	2E-8		0.044	[0.028-0.060] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1008	chr2	55521038	55521039	rs66728407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs66728407-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1008	chr2	55572298	55572299	rs188370147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.1		rs188370147-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1009	chr2	55582601	55582601	rs5831355	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.1	CCDC88A	rs5831355-T	0.5631	2E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix [18391927] (imputed)	N
1009	chr2	55582683	55582684	rs1437394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs1437394-A	0.5732	5E-9	(conditional-joint)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1009	chr2	55585624	55585625	rs6724338	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs6724338-C	0.6845	4E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1009	chr2	55596478	55596479	rs17792113	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	CCDC88A	rs17792113-A	0.9768	7E-6		0.0947	[0.054-0.136] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1009	chr2	55605184	55605185	rs11678347	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Heavy vaginal discharge	457 Japanese ancestry female cases, 5,277 Japanese ancestry female controls	471 Japanese ancestry female cases, 5,143 Japanese ancestry female controls	2p16.1	NR	rs11678347-G	0.468275225	5E-6		0.22653061	[0.13-0.32] unit decrease	Affymetrix [536506]	N
1009	chr2	55621628	55621629	rs13010237	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.1	NR	rs13010237-G	0.2877	4E-11				NR [9056863] (imputed)	N
1009	chr2	55670357	55670358	rs7589235	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.1		rs7589235-T	0.23	6E-16		8.08	z score increase	Affymetrix [9061022] (imputed)	N
1009	chr2	55673950	55673951	rs9797946	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.1	NR	rs9797946-T	0.2526	3E-12				NR [9056863] (imputed)	N
1009	chr2	55690222	55690223	rs10182056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p16.1		rs10182056-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1010	chr2	55706666	55706667	rs74928805	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	AC019198.1	rs74928805-A	0.9755	4E-6		0.0936	[0.054-0.133] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1010	chr2	55809053	55809054	rs1975487	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2p16.1	PNPT1	rs1975487-A	0.464	3E-6		0.2107	[0.12-0.3] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1010	chr2	55809053	55809054	rs1975487	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2p16.1	PNPT1	rs1975487-A	0.464	2E-9		0.1602	[0.11-0.21] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1011	chr2	55843040	55843041	rs7581233	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs7581233-?	NR	2E-10	(Ep-CAM)	1.71705	[1.19-2.24] unit increase	Illumina [11901634] (imputed)	N
1011	chr2	55843412	55843413	rs782590	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	2p16.1	SMEK2	rs782590-T	0.56	4E-8	(SBP)	0.09	[NR] mmHg increase	Illumina [1257079] (imputed)	N
1011	chr2	55845108	55845109	rs10200159	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2p16.1	PPP4R3B	rs10200159-C	0.05655	4E-19		1.511	[1.38-1.66]	Illumina [8966411] (imputed)	N
1011	chr2	55854285	55854285	rs11420448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2p16.1		rs11420448-GT	NR	2E-8		0.1533	[0.099-0.207] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1011	chr2	55856948	55856949	rs116679420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs116679420-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1011	chr2	55862354	55862355	rs6739788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2p16.1		rs6739788-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1011	chr2	55872537	55872538	rs7594497	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2p16.1	PNPT1	rs7594497-C	0.061	4E-9		1.11	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1011	chr2	55873384	55873385	rs7584120	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p16.1	PNPT1	rs7584120-G	0.8902	3E-6				Affymetrix, Illumina [9900000] (imputed)	N
1011	chr2	55873384	55873385	rs7584120	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p16.1	PNPT1	rs7584120-G	0.8902	8E-7		0.0494	[0.03-0.069] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1011	chr2	55873384	55873385	rs7584120	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	2p16.1	PNPT1	rs7584120-G	0.8902	7E-6		0.0465	[0.026-0.067] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1011	chr2	55873384	55873385	rs7584120	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	2p16.1	PNPT1	rs7584120-G	0.8902	1E-6		0.0487	[0.029-0.068] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1011	chr2	55873384	55873385	rs7584120	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2p16.1	PNPT1	rs7584120-G	0.8902	2E-7		0.0511	[0.032-0.071] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1011	chr2	55890602	55890603	rs10204169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2p16.1		rs10204169-T	NR	3E-8		0.1113	[0.072-0.151] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1011	chr2	55891139	55891140	rs10172181	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2p16.1	PNPT1	rs10172181-C	0.0535539	3E-8		0.111839026	[0.072-0.151] unit increase	Affymetrix [7288503] (imputed)	N
1011	chr2	55900937	55900938	rs782628	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	2p16.1	NR	rs782628-A	NR	5E-6		0.029544396	[0.017-0.042] unit decrease	Illumina [NR] (imputed)	N
1011	chr2	55901316	55901317	rs12617829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs12617829-T	NR	2E-8		0.0269943	[0.018-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1011	chr2	55902415	55902416	rs706550	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	2p16.1	PNPT1	rs706550-A	0.0940394	5E-8		0.18646702	[0.12-0.25] unit increase	Affymetrix [7288503] (imputed)	N
1011	chr2	55932389	55932390	rs1084524	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p16.1	PNPT1	rs1084524-G	0.15	2E-9				Affymetrix, Illumina [8002429] (imputed)	N
1011	chr2	55932389	55932390	rs1084524	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	2p16.1	PNPT1	rs1084524-G	0.15	6E-6		1.11	NR	Affymetrix [at least 8002429] (imputed)	N
1011	chr2	55933013	55933014	rs2627761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	2p16.1		rs2627761-T	NR	7E-11		0.083	[0.058-0.108] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1011	chr2	55933013	55933014	rs2627761	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	2p16.1	PNPT1, EFEMP1	rs2627761-T	NR	3E-8		0.0514	unit decrease	Illumina [15409056] (imputed)	N
1011	chr2	55933013	55933014	rs2627761	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	2p16.1	PNPT1, EFEMP1	rs2627761-T	NR	4E-9		0.907738	[0.88-0.94]	Affymetrix, Illumina [14822926] (imputed)	N
1011	chr2	55933013	55933014	rs2627761	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2p16.1	PNPT1	rs2627761-C	NR	6E-10		1.11	1.07-1.15	Affymetrix [at least 665500] (imputed)	N
1012	chr2	55970527	55970528	rs62167670	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs62167670-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1012	chr2	55973731	55973732	rs2163237	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p16.1	NR	rs2163237-C	0.671727695594125	5E-6	(IGP48)	0.1519	[0.087-0.217] unit decrease	Illumina [~ 2500000] (imputed)	N
1012	chr2	55976052	55976053	rs11125595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs11125595-C	NR	1E-10		0.0193381	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	55980424	55980425	rs114869558	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs114869558-?	NR	9E-10	(Ep-CAM)	1.61928	[1.1-2.14] unit increase	Illumina [11901634] (imputed)	N
1012	chr2	55981019	55981020	rs201196726	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 112 Asian ancestry individuals, 387 individuals	NA	2p16.1	NR	rs201196726-G	NR	1E-6		6.48		Illumina [NR] (imputed)	N
1012	chr2	55987067	55987068	rs6755214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	PNPT1	rs6755214-G	NR	1E-14		0.0257632	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	55987067	55987068	rs6755214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs6755214-G	NR	2E-18		0.026689	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	55987067	55987068	rs6755214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	PNPT1	rs6755214-G	NR	2E-8		0.0186646	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	55988947	55988948	rs11887339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p16.1		rs11887339-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1012	chr2	55991003	55991004	rs13424210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs13424210-A	NR	3E-14		0.0409774	[0.03-0.052] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	55991508	55991509	rs1864457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	PNPT1	rs1864457-A	NR	3E-12		0.0237327	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	55992139	55992140	rs11694967	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	PNPT1	rs11694967-C	NR	6E-16		0.0377406	[0.029-0.047] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	55992211	55992212	rs17369379	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	PNPT1	rs17369379-T	NR	3E-10		0.0368821	[0.025-0.048] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	55993808	55993809	rs72920755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	PNPT1	rs72920755-A	NR	2E-9		0.0376887	[0.025-0.05] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	55993808	55993809	rs72920755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs72920755-A	NR	4E-13		0.0419967	[0.031-0.053] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	55993808	55993809	rs72920755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	PNPT1	rs72920755-A	NR	4E-8		0.0345118	[0.022-0.047] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	55993808	55993809	rs72920755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs72920755-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1012	chr2	55993808	55993809	rs72920755	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p16.1	PNPT1	rs72920755-A	0.0657	1E-6		0.0653	[0.039-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1012	chr2	55997160	55997164	rs151176509	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	PNPT1	rs151176509-T	0.0403	7E-6		0.0746	[0.042-0.107] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1012	chr2	55997547	55997548	rs13429677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	PNPT1	rs13429677-G	NR	1E-20		0.03944	[0.031-0.048] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	56006984	56006985	rs11888023	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p16.1	NR	rs11888023-C	0.123777	4E-20		0.0425958	[0.034-0.052] unit decrease	NR [19129689] (imputed)	N
1012	chr2	56008903	56008904	rs7577894	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2p16.1	EFEMP1	rs7577894-T	0.39	1E-6	(site of onset)	1.41	[NR]	Illumina [288357]	N
1012	chr2	56010557	56010558	rs11684367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs11684367-T	NR	4E-11		0.0219919	[0.015-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	56010802	56010803	rs4355154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs4355154-G	NR	5E-13		0.023666	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56010802	56010803	rs4355154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs4355154-G	NR	6E-19		0.0265446	[0.021-0.032] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	56010802	56010803	rs4355154	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs4355154-G	NR	4E-12		0.0225594	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56011516	56011517	rs41393947	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs41393947-A	0.132	1E-10		6.42	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1012	chr2	56011516	56011517	rs41393947	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p16.1	NR	rs41393947-A	0.1306	3E-9	(EA)	0.1337	[0.09-0.178] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1012	chr2	56011516	56011517	rs41393947	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2p16.1	NR	rs41393947-A	0.1291	5E-9		0.1307	[0.087-0.175] unit decrease	Affymetrix, Illumina [~ 9300000] (imputed)	N
1012	chr2	56012213	56012214	rs2009262	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p16.1	NR	rs2009262-C		4E-12		0.1	[0.08-0.12] unit increase	NR [NR]	N
1012	chr2	56012213	56012214	rs2009262	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs2009262-T	0.79	1E-19		0.0097	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1012	chr2	56012213	56012214	rs2009262	26686553	Jorgenson E	2015-12-21	Nat Commun	A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia.	Inguinal hernia	5,295 European ancestry cases, 67,510 European ancestry controls	9,701 European ancestry cases, 82,743 European ancestry controls	2p16.1	EFEMP1	rs2009262-T	0.78	1E-17		1.15	[1.11-1.19]	Affymetrix [6161781] (imputed)	N
1012	chr2	56018150	56018151	rs182311061	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs182311061-A	0.972	2E-8		0.0334	[0.022-0.045] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1012	chr2	56019154	56019155	rs181317374	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs181317374-T	NR	8E-12		0.0525816	[0.038-0.068] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	56020429	56020430	rs183533030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs183533030-A	NR	4E-9		0.0405346	[0.027-0.054] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	56020429	56020430	rs183533030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs183533030-A	NR	4E-8		0.0410206	[0.026-0.056] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56021150	56021151	rs145363329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs145363329-T	0.0281	2E-8	(MTAG)	0.0304	[0.02-0.041] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1012	chr2	56025872	56025873	rs74760234	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p16.1	NR	rs74760234-?	NR	4E-7	(Latino)	1.2083	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1012	chr2	56030444	56030445	rs1985162	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p16.1	EFEMP1	rs1985162-C	0.78984375	1E-10	(EFEMP1, 8480_29_3)	0.18306912	[0.13-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1012	chr2	56032551	56032552	rs1367225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1367225-C	NR	2E-15		0.0258436	[0.019-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56032998	56032999	rs12615158	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EFEMP1	5,346 Icelandic ancestry individuals	NA	2p16.1		rs12615158-T	0.1861	1E-18		0.187916	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1012	chr2	56033426	56033427	rs1430191	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	2p16.1	EFEMP1	rs1430191-T	0.4785	1E-9	(conditioned on rs3791675)	1.09	[1.06-1.12]	Affymetrix, Illumina [37144863] (imputed)	N
1012	chr2	56035075	56035076	rs6714513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs6714513-C	NR	3E-10		0.0186042	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56036795	56036796	rs6545522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs6545522-A	NR	7E-9		0.0196092	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56036795	56036796	rs6545522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs6545522-A	NR	1E-13		0.0228425	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	56040098	56040099	rs10199082	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs10199082-T		7E-6	(EA)	0.264	unit increase	Affymetrix [at least 2696785] (imputed)	N
1012	chr2	56040098	56040099	rs10199082	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs10199082-T		2E-11		0.26	unit increase	Affymetrix [at least 2696785] (imputed)	N
1012	chr2	56042629	56042630	rs11687514	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2p16.1	NR	rs11687514-?	NR	2E-6		0.101248	[0.06-0.143] unit decrease	NR [13958389] (imputed)	N
1012	chr2	56043801	56043802	rs4672075	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p16.1	EFEMP1	rs4672075-?	NR	4E-9		0.0752	[0.05-0.1] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1012	chr2	56043801	56043802	rs4672075	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p16.1	EFEMP1	rs4672075-C	0.571	2E-11		0.085	[0.06-0.11] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1012	chr2	56043801	56043802	rs4672075	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs4672075-C	0.5692	6E-17		0.11	[0.083-0.137] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1012	chr2	56045914	56045915	rs9753383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs9753383-G	NR	3E-20		0.0321714	[0.025-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56045914	56045915	rs9753383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs9753383-G	NR	9E-32		0.0373552	[0.031-0.044] unit decrease	Affymetrix [321016] (imputed)	N
1012	chr2	56045914	56045915	rs9753383	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs9753383-G	NR	3E-18		0.0301538	[0.023-0.037] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56047282	56047282	rs35920731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs35920731-TA	NR	2E-10		0.0200313	[0.014-0.026] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56047512	56047513	rs76387685	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs76387685-G	NR	5E-8		0.0328207	[0.021-0.045] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	56048943	56048944	rs75439645	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	EFEMP1	rs75439645-A	0.1278	8E-6		0.0379	[0.021-0.055] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1012	chr2	56049241	56049242	rs6749785	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6749785-T	0.589687	3E-9		0.0531823	[0.035-0.071] decrease	Affymetrix [11014269] (imputed)	N
1012	chr2	56053094	56053095	rs7572523	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p16.1	PNPT1, EFEMP1	rs7572523-A	0.5666	8E-17		0.11	[0.083-0.137] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1012	chr2	56058355	56058356	rs76032374	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2p16.1	EFEMP1	rs76032374-A	0.866958	8E-27		1.0708491	NR	Affymetrix [~ 9600000] (imputed)	N
1012	chr2	56061812	56061813	rs10187329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs10187329-C	NR	2E-16		0.0476259	[0.036-0.059] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	56061812	56061813	rs10187329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs10187329-C	NR	1E-17		0.0451591	[0.035-0.055] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	56061812	56061813	rs10187329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs10187329-C	NR	9E-9		0.0333385	[0.022-0.045] unit increase	Affymetrix [323858] (imputed)	N
1012	chr2	56066508	56066509	rs75098493	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs75098493-G	NR	2E-10		0.0536079	[0.037-0.07] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	56067181	56067182	rs4146922	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p16.1	NR	rs4146922-?	NR	2E-13		0.05830668	[0.043-0.074] unit decrease	Illumina [34656550] (imputed)	N
1012	chr2	56067181	56067182	rs4146922	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p16.1	PNPT1	rs4146922-A	0.82	1E-25		0.056	[0.042-0.07] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1012	chr2	56069673	56069674	rs58754091	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	EFEMP1	rs58754091-A	0.8279	9E-9		0.0485	[0.032-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1012	chr2	56075674	56075676	rs201699038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs201699038-A	NR	2E-9		0.0237716	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1012	chr2	56079608	56079609	rs11899380	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs11899380-A	NR	2E-13		0.0329487	[0.024-0.042] unit increase	Affymetrix [323123] (imputed)	N
1012	chr2	56080378	56080379	rs58680090	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2p16.1	EFEMP1	rs58680090-T	0.932	2E-9	(AA)	0.081	[0.056-0.106] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1012	chr2	56080378	56080379	rs58680090	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2p16.1	EFEMP1	rs58680090-T		4E-59				Affymetrix, Illumina [17972582] (imputed)	N
1012	chr2	56080378	56080379	rs58680090	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	2p16.1	EFEMP1	rs58680090-T	0.931	3E-8	(AA)	0.091	[0.058-0.124] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1012	chr2	56089107	56089108	rs181661155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	2p16.1		rs181661155-A	NR	2E-10		0.1568	[0.11-0.2] unit increase	Affymetrix, Illumina [25752093] (imputed)	N
1012	chr2	56089539	56089540	rs1367226	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p16.1	EFEMP1	rs1367226-?	NR	4E-8	(Conditioned on rs3791675)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1012	chr2	56090238	56090239	rs11680015	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs11680015-G	NR	2E-10		0.0306589	[0.021-0.04] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	56090471	56090472	rs56666949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs56666949-T	NR	2E-12		0.0311832	[0.023-0.04] unit increase	Affymetrix [321016] (imputed)	N
1012	chr2	56093203	56093204	rs1802575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1802575-C	NR	4E-8		0.0229202	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	56093203	56093204	rs1802575	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2p16.1	EFEMP1	rs1802575-C	0.132914713398429	8E-16		0.0063514	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1012	chr2	56093203	56093204	rs1802575	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p16.1	EFEMP1	rs1802575-G	0.87	1E-10		1.09	[1.07-1.1]	Illumina [at least 560000] (imputed)	N
1012	chr2	56093203	56093204	rs1802575	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p16.1	EFEMP1	rs1802575-?	NR	2E-10		1.088	[1.061-1.117]	Illumina [13754664] (imputed)	N
1012	chr2	56094578	56094578	rs376096585	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2p16.1	EFEMP1	rs376096585-C	0.78	4E-18		0.00933	[0.0072-0.0114] unit increase	Affymetrix [at least 8002429] (imputed)	N
1012	chr2	56095009	56095010	rs7426380	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2p16.1	EFEMP1	rs7426380-?	NR	2E-13		0.1	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1012	chr2	56095103	56095104	rs11125608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs11125608-G	NR	6E-13		0.0226246	[0.016-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56095365	56095366	rs9309272	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p16.1	ASB3, CHAC2, ERLEC1, GPR75, PSME4, ACYP2, SPTBN1, EML6, CCDC88A, CCDC104, SMEK2, PNPT1, EFEMP1	rs9309272-?		3E-34				Affymetrix, Illumina [NR] (imputed)	N
1012	chr2	56095365	56095366	rs9309272	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs9309272-?	NR	7E-33				Affymetrix [~ 8270000] (imputed)	N
1012	chr2	56095993	56095994	rs17278665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs17278665-G	NR	9E-9		0.023788	[0.016-0.032] unit increase	Affymetrix [127266] (imputed)	N
1012	chr2	56095993	56095994	rs17278665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs17278665-G	NR	2E-24		0.0416857	[0.034-0.05] unit increase	Affymetrix [321114] (imputed)	N
1012	chr2	56095993	56095994	rs17278665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs17278665-G	NR	6E-12		0.0282154	[0.02-0.036] unit increase	Affymetrix [323858] (imputed)	N
1012	chr2	56095993	56095994	rs17278665	28374850	Ellinghaus E	2017-04-04	Sci Rep	Genome-wide association analysis for chronic venous disease identifies EFEMP1 and KCNH8 as susceptibility loci.	Chronic venous disease	323 German ancestry cases and 4,619 German ancestry controls	1,946 German ancestry cases and 3,146 German ancestry controls	2p16.1	EFEMP1	rs17278665-G	0.15	2E-8		1.32	1.19-1.45	Affymetrix [1934349] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.1		rs3791679-G	NR	1E-22		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	2p16.1		rs3791679-G	NR	1E-46		0.1952	[0.17-0.22] unit decrease	Affymetrix, Illumina [25841416] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p16.1		rs3791679-G	NR	4E-215		0.047	[0.044-0.05] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p16.1		rs3791679-G	0.756046	2E-61		0.0383048	[0.034-0.043] unit decrease	Illumina [13479295] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	2p16.1		rs3791679-G	NR	1E-8		0.0746	[0.049-0.1] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs3791679-G	NR	9E-29		0.040645	[0.033-0.048] unit decrease	Affymetrix [323123] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hernia abdominopelvic cavity	6,291 European ancestry cases, 50,346 European ancestry controls	NA	2p16.1		rs3791679-G	0.237442	7E-14		0.84		Affymetrix [15565029] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p16.1	EFEMP1	rs3791679-?	NR	4E-82		0.06307448	[0.057-0.07] unit decrease	Illumina [27896057] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p16.1	NR	rs3791679-?	NR	2E-19		0.06817823	[0.053-0.083] unit decrease	Illumina [34656550] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	2p16.1	EFEMP1	rs3791679-G	0.225	2E-12		1.11	[1.08-1.15]	Affymetrix [84000000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p16.1	EFEMP1	rs3791679-A	0.7714	7E-35		0.0344	[0.029-0.04] unit increase	Affymetrix [19819130] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2p16.1	EFEMP1	rs3791679-A	0.7714	3E-16		0.0231	[0.018-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2p16.1	EFEMP1	rs3791679-A	0.7714	3E-13		0.0203	[0.015-0.026] unit increase	Affymetrix [19819130] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	EFEMP1	rs3791679-G	0.227809	8E-53	(females)	0.0601	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	EFEMP1	rs3791679-G	0.227809	2E-38		0.03947	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	EFEMP1	rs3791679-G	0.227809	7E-34		0.03641	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	EFEMP1	rs3791679-G	0.227809	1E-40	(females)	0.05205	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	EFEMP1	rs3791679-G	0.227809	3E-8	(females)	0.02194	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p16.1		rs3791679-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	EFEMP1	rs3791679-A	0.7643	5E-18		0.0673	[0.052-0.083] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7579	2E-14	(men)	0.0481	[0.036-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7612	1E-11	(EA, men)	0.05	[0.035-0.065] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7608	8E-11	(men)	0.0468	[0.033-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7605	1E-12	(EA)	0.0364	[0.026-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7579	2E-11		0.0333	[0.024-0.043] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791679-?	0.7605	2E-14	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791679-?	0.7579	9E-14	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	2E-7		0.0468	[0.029-0.064] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	9E-10	(men)	0.0422	[0.029-0.056] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	2E-12		0.0344	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	5E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	5E-12	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	2E-17				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	6E-7	(women)	0.0294	[0.018-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	5E-16		0.0354	[0.027-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	EFEMP1	rs3791679-A	0.7555	2E-12	(men)	0.0409	[0.03-0.052] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	2p16.1	EFEMP1, PNPT1	rs3791679-G	NR	8E-7	(EA)	0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	2p16.1	EFEMP1, PNPT1	rs3791679-G	NR	5E-8		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	2p16.1	EFEMP1	rs3791679-?	NR	1E-7		0.067	[0.092-0.042] unit decrease	Illumina [12039492] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	2p16.1	EFEMP1	rs3791679-A	0.75	2E-19	(non-East Asian)	0.0353	[0.028-0.043] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	2p16.1	EFEMP1	rs3791679-A	0.2064	6E-7	(East Asian women)	0.02433	[0.015-0.034] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	2p16.1	EFEMP1	rs3791679-A	0.2064	2E-10	(East Asian men)	0.04042	[0.028-0.053] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	2p16.1	EFEMP1	rs3791679-A	0.206	5E-14	(East Asian)	0.029	[0.021-0.037] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	EFEMP1	rs3791679-A	0.7614	3E-21	(EA, men)	0.0525	[0.042-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	EFEMP1	rs3791679-A	0.7614	2E-19	(EA)	0.0353	[0.028-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	EFEMP1	rs3791679-A	0.7597	6E-10	(EA, women)	0.0327	[0.022-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	EFEMP1	rs3791679-A	0.7597	5E-15	(EA,men)	0.0466	[0.035-0.058] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	EFEMP1	rs3791679-A	0.7597	1E-20	(EA)	0.0385	[0.03-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p16.1	EFEMP1	rs3791679-A	0.766	2E-67		0.06	[0.052-0.068] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2p16.1	EFEMP1	rs3791679-A	0.77	8E-16		1.22	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1012	chr2	56096891	56096892	rs3791679	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2p16.1	EFEMP1	rs3791679-A	0.25	6E-9		0.07	[0.05-0.09] cm increase	Illumina [420885]	N
1012	chr2	56096891	56096892	rs3791679	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2p16.1	EFEMP1, PNPT1	rs3791679-T	0.81	6E-11		5.8	[4.04-7.56] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1013	chr2	56102743	56102744	rs11899888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p16.1		rs11899888-G	NR	3E-15		0.0232	[0.018-0.029] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1013	chr2	56102743	56102744	rs11899888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs11899888-G	NR	6E-31		0.0446516	[0.037-0.052] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56102743	56102744	rs11899888	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	EFEMP1	rs11899888-G	0.8602	1E-12		0.2701	[0.2-0.34] mmHg increase	Affymetrix [NR] (imputed)	N
1013	chr2	56102743	56102744	rs11899888	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	EFEMP1	rs11899888-G	0.6448	6E-12		0.2549	[0.18-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
1013	chr2	56102743	56102744	rs11899888	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	EFEMP1	rs11899888-A	0.846	1E-10		0.0575	[0.04-0.075] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs59985551-T	NR	1E-35		0.0458592	[0.039-0.053] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs59985551-T	NR	4E-51		0.050523	[0.044-0.057] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.1	EFEMP1	rs59985551-T	0.2261	2E-44		0.0313	[0.027-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs59985551-?	NR	8E-286				NR [~ 8900000] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p16.1	NR	rs59985551-?	NR	3E-7	(male)	0.21303	[0.13-0.29] unit decrease	Affymetrix [7794483] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p16.1	NR	rs59985551-?	NR	1E-16		0.21826	[0.17-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1013	chr2	56106927	56106928	rs59985551	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p16.1	NR	rs59985551-?	NR	1E-14	(female)	0.22285	[0.17-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
1013	chr2	56108332	56108333	rs1346786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1346786-T	NR	2E-11		0.0209135	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56108332	56108333	rs1346786	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	2p16.1	EFEMP1	rs1346786-T	0.31	8E-7	(EA)	0.015	[0.0091-0.0209] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1013	chr2	56108332	56108333	rs1346786	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	2p16.1	EFEMP1	rs1346786-T	0.31	4E-8		0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1013	chr2	56108881	56108882	rs3748959	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	2p16.1	EFEMP1	rs3748959-?	NR	2E-10		0.61	[0.41-0.81] unit increase	Affymetrix [5682219] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs3791675-T	NR	1E-8		0.0209096	[0.014-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs3791675-T	NR	4E-11		0.0240922	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	32184442	Olafsdottir T	2020-03-17	Commun Biol	Genome-wide association identifies seven loci for pelvic organ prolapse in Iceland and the UK Biobank.	Pelvic organ prolapse	15,010 European ancestry cases, 340,734 European ancestry controls	NA	2p16.1	EFEMP1	rs3791675-C	0.7893	3E-11		1.1111112	NR	Affymetrix, Illumina [37144863] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p16.1	NR	rs3791675-?	NR	1E-19		0.06801427	[0.053-0.083] unit decrease	Illumina [34656550] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p16.1	EFEMP1	rs3791675-T	0.2447	2E-8		0.0438	[0.029-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-C	0.7555000000000001	8E-15	(EA, men)	0.0507	[0.038-0.063] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-C	0.7555000000000001	3E-16	(EA)	0.0358	[0.027-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-C	0.7531	7E-14	(women)	0.0465	[0.034-0.059] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-C	0.7531	2E-15		0.0334	[0.025-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	EFEMP1	rs3791675-C	0.7497	5E-10	(women)	0.0441	[0.03-0.058] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-?	0.7555000000000001	6E-15	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-?	0.7531	3E-13	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	EFEMP1	rs3791675-?	0.7531	2E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p16.1	EFEMP1	rs3791675-T	0.77	1E-38		0.065	[0.051-0.079] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p16.1	EFEMP1	rs3791675-T	0.23	3E-35		0.053	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	2p16.1	EFEMP1	rs3791675-C	0.77	3E-7		0.09	[0.04-0.14] SD increase	Illumina [559712] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	2p16.1	EFEMP1	rs3791675-G	0.23	4E-6		0.45	[NR] cm increase	Affymetrix [334546]	N
1013	chr2	56111308	56111309	rs3791675	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	2p16.1	EFEMP1	rs3791675-G	0.22	2E-9		0.42	[0.28-0.56] cm increase	Affymetrix [2156535] (imputed)	N
1013	chr2	56111308	56111309	rs3791675	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	2p16.1	EFEMP1	rs3791675-C	0.77	2E-12		0.09	[0.05-0.12] s.d. increase (males)	Affymetrix [402951]	N
1013	chr2	56112439	56112440	rs1367228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1367228-A	NR	6E-9		0.0166408	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56112439	56112440	rs1367228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs1367228-A	NR	4E-12		0.0216823	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56112439	56112440	rs1367228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1367228-A	NR	2E-22		0.0277185	[0.022-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56112439	56112440	rs1367228	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 30)	3,566 European ancestry individuals	4,680 European ancestry individuals	2p16.1		rs1367228-A	0.427790241	6E-9				Illumina [7417619] (imputed)	N
1013	chr2	56112439	56112440	rs1367228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p16.1		rs1367228-?	NR	5E-24				NR [~ 8900000] (imputed)	N
1013	chr2	56115792	56115792	rs202153703	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs202153703-AAGAAAACC	NR	4E-10		0.0665038	[0.046-0.087] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56115833	56115834	rs11125609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs11125609-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
1013	chr2	56116422	56116423	rs114866397	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs114866397-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1013	chr2	56118045	56118046	rs10865291	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs10865291-A	NR	8E-12		0.0205871	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56119104	56119105	rs6761893	30102696	Chen Y	2018-08-13	PLoS Genet	A genome-wide association study identifies a susceptibility locus for biliary atresia on 2p16.1 within the gene EFEMP1.	Biliary atresia	343 European ancestry cases, 1,716 European ancestry controls	156 European ancestry cases, 212 European ancestry controls	2p16.1	NR	rs6761893-T	0.34	3E-8		1.54	[1.30-1.81]	Illumina [1171073] (imputed)	N
1013	chr2	56120852	56120853	rs1430193	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	2p16.1	EFEMP1	rs1430193-T	0.37	2E-12	(EA)	21.125	[15.25-27.00] ml decrease	Affymetrix, Illumina [2762059] (imputed)	N
1013	chr2	56121568	56121568	rs779074208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs779074208-T	NR	4E-14		0.0249257	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56121568	56121568	rs779074208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs779074208-T	NR	1E-29		0.0340167	[0.028-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56121568	56121568	rs779074208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs779074208-T	NR	5E-14		0.0246652	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1013	chr2	56126083	56126084	rs3791666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs3791666-C	NR	8E-13		0.0219582	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56128090	56128091	rs7596872	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	2p16.1	EFEMP1	rs7596872-A	NR	4E-24		0.0969	[0.078-0.116] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1013	chr2	56128090	56128091	rs7596872	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	EFEMP1	rs7596872-A	0.0975	9E-11		0.0642	[0.045-0.084] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1013	chr2	56128090	56128091	rs7596872	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	2p16.1	EFEMP1	rs7596872-A		2E-20		9.126	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
1013	chr2	56128090	56128091	rs7596872	30659137	Traylor M	2019-01-18	Neurology	Genetic variation in PLEKHG1 is associated with white matter hyperintensities (n = 11,226).	White matter hyperintensity volume	8,429 European ancestry individuals, 2,797 European ancestry individuals with ischemic stroke	1,202 European ancestry individuals	2p16.1	EFEMP1	rs7596872-A	NR	3E-12		0.143	[0.10-0.18] unit increase	Affymetrix, Illumina [at least 39131578] (imputed)	N
1013	chr2	56128299	56128300	rs3828239	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	EFEMP1	rs3828239-A	0.6974	5E-7		0.0347	[0.021-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr2	56128525	56128526	rs3791663	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	2p16.1	EFEMP1	rs3791663-?	NR	1E-8		0.0466	NR L decrease	Affymetrix [9390170] (imputed)	N
1013	chr2	56128525	56128526	rs3791663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs3791663-A	NR	2E-9		0.0229093	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56128525	56128526	rs3791663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs3791663-A	NR	1E-20		0.0323393	[0.026-0.039] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56128525	56128526	rs3791663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	EFEMP1	rs3791663-A	NR	2E-9		0.0227939	[0.015-0.03] unit decrease	Affymetrix [323123] (imputed)	N
1013	chr2	56131223	56131224	rs35387878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs35387878-G	NR	6E-9		0.0178011	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56134211	56134212	rs56361700	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs56361700-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1013	chr2	56134826	56134827	rs1430197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	EFEMP1	rs1430197-A	NR	5E-13		0.0210142	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56135098	56135099	rs78857879	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p16.1	EFEMP1	rs78857879-A	NR	3E-21		0.0956	[0.076-0.115] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1013	chr2	56135098	56135099	rs78857879	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2p16.1	EFEMP1	rs78857879-A	0.096	3E-22		0.0963	[0.077-0.116] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1013	chr2	56135098	56135099	rs78857879	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2p16.1	NR	rs78857879-G		2E-15		0.15	[0.11-0.19] unit increase	NR [NR]	N
1013	chr2	56135098	56135099	rs78857879	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2p16.1	EFEMP1	rs78857879-A	0.1	3E-7	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
1013	chr2	56135098	56135099	rs78857879	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2p16.1	EFEMP1	rs78857879-A	0.1	2E-8				Affymetrix, Illumina [14227402] (imputed)	N
1013	chr2	56150863	56150864	rs3762515	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2p16.1	EFEMP1	rs3762515-T	0.0958	1E-18				Affymetrix, Illumina [9900000] (imputed)	N
1013	chr2	56152749	56152750	rs146896516	29752348	Rutten-Jacobs LCA	2018-05-11	Stroke	Genetic Study of White Matter Integrity in UK Biobank (N=8448) and the Overlap With Stroke, Depression, and Dementia.	White matter hyperintensity volume	8,429 European ancestry individuals	NA	2p16.1	EFEMP1	rs146896516-A	0.10	4E-12		0.147	[0.11-0.19] unit increase	Affymetrix [up to 39131578] (imputed)	N
1013	chr2	56156559	56156560	rs180765220	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.1	Intergenic	rs180765220-T	0.996	5E-6	(AA)	0.168	unit increase	Illumina [NR] (imputed)	N
1013	chr2	56167072	56167073	rs2903839	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	2p16.1	intergenic	rs2903839-?		3E-7	(paternal & maternal alleles modelled separately)			Affymetrix [715787]	N
1013	chr2	56167072	56167073	rs2903839	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	2p16.1	intergenic	rs2903839-?		2E-7	(difference between paternal and maternal transmissions)			Affymetrix [715787]	N
1013	chr2	56167072	56167073	rs2903839	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	2p16.1	intergenic	rs2903839-?		2E-6	(maternal effect)			Affymetrix [715787]	N
1013	chr2	56171981	56171982	rs79488259	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RN7SKP208	rs79488259-T	NR	4E-8		0.0349871	[0.023-0.047] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56174643	56174644	rs4671265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	RN7SKP208	rs4671265-A	NR	1E-11		0.0252115	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
1013	chr2	56174643	56174644	rs4671265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RN7SKP208	rs4671265-A	NR	1E-11		0.0230008	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56178322	56178323	rs142503022	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs142503022-?	NR	3E-10	(Ep-CAM)	1.68006	[1.16-2.2] unit increase	Illumina [11901634] (imputed)	N
1013	chr2	56179758	56179759	rs6704991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p16.1	RP11-481J13.1	rs6704991-C	NR	2E-8		0.0180602	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1013	chr2	56180552	56180553	rs58452190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p16.1	NR	rs58452190-C	NR	2E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1013	chr2	56182928	56182929	rs190486114	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.1	BC043355	rs190486114-A	0.996	1E-6	(AA)	0.184	unit increase	Illumina [NR] (imputed)	N
1013	chr2	56183541	56183542	rs6721145	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p16.1	EFEMP1, MIR217HG	rs6721145-?	NR	9E-12		0.023086652	[0.016-0.03] unit increase	Illumina [27896057] (imputed)	N
1013	chr2	56186470	56186471	rs1465685	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs1465685-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1013	chr2	56188647	56188648	rs1432561	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p16.1	PNPT1	rs1432561-T	0.642775514	8E-6		0.144	[0.081-0.207] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1013	chr2	56188765	56188765	rs11446793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2p16.1		rs11446793-CA	NR	4E-8		0.0141	[0.009-0.0192] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1013	chr2	56189617	56189618	rs1432559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	RP11-481J13.1	rs1432559-G	NR	1E-13		0.0277695	[0.02-0.035] unit increase	Affymetrix [321114] (imputed)	N
1013	chr2	56189617	56189618	rs1432559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1	rs1432559-G	NR	1E-13		0.0253558	[0.019-0.032] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56189617	56189618	rs1432559	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.1	AC011306.1	rs1432559-T	0.7814	2E-9		0.013	[0.0089-0.0171] unit decrease	Affymetrix [18391927] (imputed)	N
1013	chr2	56189617	56189618	rs1432559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs1432559-?	NR	9E-65				NR [~ 8900000] (imputed)	N
1013	chr2	56190272	56190273	rs6735393	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs6735393-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1013	chr2	56191469	56191470	rs2868985	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs2868985-A	NR	3E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1013	chr2	56191920	56191921	rs56950185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.2	rs56950185-T	NR	3E-8		0.0364566	[0.024-0.049] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56193417	56193418	rs6747490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p16.1		rs6747490-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1013	chr2	56193664	56193665	rs13431149	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	MIR217HG	rs13431149-A	0.3773	1E-9		0.2055	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1013	chr2	56194085	56194085	rs3217369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	RP11-481J13.1, AC011306.2	rs3217369-T	NR	1E-12		0.0229289	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1013	chr2	56195695	56195696	rs62164511	24929828	Loth DW	2014-06-15	Nat Genet	Genome-wide association analysis identifies six new loci associated with forced vital capacity.	Lung function (forced vital capacity)	52,253 European ancestry indiviudals	32,917 European ancestry individuals, 6,070 African American individuals, 849 Hispanic individuals, 8,637 East Asian ancestry individuals	2p16.1	EFEMP1	rs62164511-A	0.902	2E-7	(AA)	84.664	[52.98-116.35] ml decrease	Affymetrix, Illumina [2762059] (imputed)	N
1013	chr2	56196422	56196423	rs6724998	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.2	rs6724998-T	NR	5E-24		0.0291944	[0.024-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56196422	56196423	rs6724998	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p16.1	RP11-481J13.1, MIR217HG	rs6724998-T	0.3834	6E-8		0.0353	[0.023-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1013	chr2	56197151	56197152	rs186819721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.1	BC043355	rs186819721-A	0.996	9E-7	(AA)	0.186	unit increase	Illumina [NR] (imputed)	N
1013	chr2	56197275	56197276	rs7564878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.2	rs7564878-C	NR	2E-11		0.0239803	[0.017-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56197799	56197800	rs138402956	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.1	BC043355	rs138402956-C	0.996	1E-6	(AA)	0.168	unit increase	Illumina [NR] (imputed)	N
1013	chr2	56200398	56200399	rs4589800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.2	rs4589800-T	NR	4E-9		0.0167026	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1013	chr2	56206496	56206497	rs10206823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.2	rs10206823-T	NR	3E-10		0.0318624	[0.022-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1013	chr2	56212233	56212234	rs13410155	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2p16.1	MIR217HG	rs13410155-?	NR	6E-12		0.493	[0.34-0.65] unit decrease	Affymetrix [11100000] (imputed)	N
1013	chr2	56217672	56217673	rs182751789	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p16.1	BC043355	rs182751789-C	0.997	4E-6	(AA)	0.181	unit increase	Illumina [NR] (imputed)	N
1014	chr2	56234941	56234942	rs9967780	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p16.1	MIR216B	rs9967780-T	0.22	2E-13		0.02	unit increase	Affymetrix [8928767] (imputed)	N
1014	chr2	56237576	56237577	rs62164518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p16.1		rs62164518-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1014	chr2	56247465	56247466	rs60595875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.1	NR	rs60595875-G	0.01045	1E-9	(EIF2B1)	0.03078	NR unit increase	Illumina [1671387] (imputed)	N
1014	chr2	56255495	56255496	rs3850352	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	2p16.1	MIR216B	rs3850352-T	0.18	4E-6		1.6666665		Affymetrix [at least 730985] (imputed)	N
1014	chr2	56255495	56255496	rs3850352	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	2p16.1	EFEMP1, MIR216B, MIR216A, MIR217	rs3850352-T	0.18	3E-7	(AA)	2.38	[1.69-3.23]	Affymetrix [at least 730985] (imputed)	N
1014	chr2	56301801	56301802	rs72798941	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs72798941-A	0.0336	1E-9	(MTAG)	0.028	[0.019-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1014	chr2	56309542	56309543	rs184412496	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs184412496-?	NR	8E-13	(Ep-CAM)	2.05352	[1.49-2.62] unit increase	Illumina [11901634] (imputed)	N
1014	chr2	56309559	56309560	rs7603021	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1, AC011306.1	rs7603021-T	NR	1E-9		0.0271915	[0.018-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1014	chr2	56319243	56319244	rs7567390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1	rs7567390-C	NR	1E-9		0.0172153	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1014	chr2	56335536	56335537	rs7588040	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	2p16.1	CCDC85A	rs7588040-T	0.239	9E-6		0.369	[0.21-0.53] unit increase	Illumina [6007542] (imputed)	N
1014	chr2	56336229	56336230	rs147326848	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	RP11-481J13.1	rs147326848-A	0.0242	2E-6		0.101	[0.059-0.143] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1014	chr2	56341700	56341701	rs59797241	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs59797241-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1014	chr2	56346235	56346235	rs774971122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1	rs774971122-C	NR	7E-9		0.016575	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1014	chr2	56350421	56350422	rs1432570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	RP11-481J13.1	rs1432570-C	NR	4E-13		0.0223613	[0.016-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1015	chr2	56363376	56363377	rs6751715	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2p16.1	intergenic	rs6751715-?	NR	1E-6	(progression)			Illumina [NR]	N
1015	chr2	56394878	56394879	rs10193757	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	EFEMP1	rs10193757-?	NR	9E-6	(TAG 56:9)	0.1904271	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1015	chr2	56406408	56406409	rs17047555	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	EFEMP1	rs17047555-?	NR	8E-6	(LPC 18:2)	0.5222167	[0.29-0.75] unit increase	Affymetrix [at least 2500000] (imputed)	N
1015	chr2	56406408	56406409	rs17047555	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	EFEMP1	rs17047555-?	NR	7E-6	(LPC 18:1)	0.5323308	[0.3-0.76] unit increase	Affymetrix [at least 2500000] (imputed)	N
1015	chr2	56409263	56409264	rs80010773	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	2p16.1	NR	rs80010773-?		3E-6		2.5	[1.72-3.83]	Illumina [539473] (imputed)	N
1015	chr2	56433557	56433558	rs991968	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2p16.1	NR	rs991968-G	0.39	9E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
1015	chr2	56443246	56443247	rs183838592	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p16.1	Intergenic	rs183838592-?		9E-6		2.62	[1.71-4.00]	Illumina [7645193] (imputed)	N
1015	chr2	56450430	56450431	rs6545559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs6545559-T	0.3238	5E-11	(MTAG)	0.0126	[0.0089-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr2	56450430	56450431	rs6545559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs6545559-T	0.3238	9E-9		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1015	chr2	56450430	56450431	rs6545559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs6545559-T	0.3238	2E-12	(MTAG)	0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr2	56450430	56450431	rs6545559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs6545559-T	0.3149	2E-9	(MTAG)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1015	chr2	56450855	56450856	rs6733298	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p16.1	CCDC85A	rs6733298-G	0.891005185865182	7E-9	(G_unclassified_F_Erysipelotrichaceae_HB)	0.494888	[0.33-0.66] unit increase	Illumina [7711310] (imputed)	N
1015	chr2	56458508	56458509	rs12713315	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2p16.1		rs12713315-?	NR	3E-9				NR [7857346] (imputed)	N
1015	chr2	56458508	56458509	rs12713315	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271894	rs12713315-?	NR	2E-9		0.010344	[0.0069-0.0137] unit decrease	Affymetrix [805426] (imputed)	N
1015	chr2	56458508	56458509	rs12713315	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	ENSG00000271894	rs12713315-T	NR	3E-8		5.524	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1015	chr2	56461081	56461082	rs12612590	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271894	rs12612590-?	NR	4E-8		0.0095557	[0.0061-0.013] unit increase	Affymetrix [805426] (imputed)	N
1015	chr2	56468321	56468322	rs192659474	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs192659474-?	NR	8E-13	(Ep-CAM)	2.05604	[1.49-2.62] unit increase	Illumina [11901634] (imputed)	N
1015	chr2	56472158	56472159	rs2869529	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271894	rs2869529-?	NR	2E-9		0.010448	[0.007-0.0139] unit decrease	Affymetrix [805426] (imputed)	N
1015	chr2	56490234	56490235	rs965255	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	2p16.1	RP11-482H16.1	rs965255-G	0.469847143	3E-6		0.128614	[0.075-0.183] unit increase	Illumina [6969139] (imputed)	N
1016	chr2	56552245	56552246	rs114819003	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.1	NR	rs114819003-A	0.01045	2E-8	(FTH1)	0.2002	NR unit increase	Illumina [1671387] (imputed)	N
1016	chr2	56577405	56577406	rs11893331	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p16.1		rs11893331-?	NR	6E-37				NR [~ 8900000] (imputed)	N
1016	chr2	56587748	56587749	rs6747380	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2p16.1	CCDC85A	rs6747380-A	0.17	6E-28		0.07	[0.056-0.084] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1016	chr2	56592082	56592083	rs17268785	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	2p16.1	CCDC85A	rs17268785-G	0.17	1E-10		3.2	[2.22-4.18] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1016	chr2	56603984	56603985	rs13432055	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.1	NA	rs13432055-T	0.712	6E-11		0.0117	[0.0082-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
1016	chr2	56613769	56613770	rs144097927	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs144097927-?	NR	2E-12	(Ep-CAM)	1.85281	[1.34-2.37] unit increase	Illumina [11901634] (imputed)	N
1017	chr2	56649929	56649930	rs186920977	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (fluoroquinolones)	43 European ancestry cases, 10,588 European ancestry controls	NA	2p16.1		rs186920977-?		1E-7		7.22	3.47-15.01	Illumina [505740] (imputed)	N
1017	chr2	56668828	56668829	rs75207608	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p16.1	NR	rs75207608-G	NR	5E-6	(GEE model)	0.99573	[0.57-1.42] unit decrease	NR [NR] (imputed)	N
1017	chr2	56734034	56734035	rs890100	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	2p16.1	NR	rs890100-?	NR	2E-6	(genus_Eubacterium)	0.7099246	[0.43-0.99] unit increase	Affymetrix [210924]	N
1018	chr2	56760120	56760121	rs144216834	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs144216834-?	NR	7E-14	(Ep-CAM)	2.0268	[1.5-2.56] unit increase	Illumina [11901634] (imputed)	N
1018	chr2	56810381	56810382	rs17048196	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p16.1	NR	rs17048196-A	NR	1E-7	(GEE model)	1.0356	[0.65-1.42] unit decrease	NR [NR] (imputed)	N
1018	chr2	56821944	56821945	rs58139318	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p16.1	NA	rs58139318-T		3E-9		0.0108645	[0.0073-0.0144] unit decrease	Illumina [13288253] (imputed)	N
1018	chr2	56835645	56835646	rs75066467	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	AC008173.1	rs75066467-T	0.9539	2E-6		0.0706	[0.041-0.1] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1018	chr2	56840078	56840079	rs2870070	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	2p16.1	intergenic	rs2870070-?	NR	3E-6		0.0116	[0.0067-0.0165] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1018	chr2	56856259	56856260	rs17190422	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	2p16.1	NR	rs17190422-?	0.06	3E-7	(EA)	2.57	[1.79-3.68]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1018	chr2	56856259	56856260	rs17190422	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	2p16.1	Intergenic	rs17190422-?		9E-6		2.073	[NR]	Affymetrix [492217] (imputed)	N
1019	chr2	56904228	56904229	rs114732119	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p16.1	NR	rs114732119-?	NR	9E-9				Illumina [7760689] (imputed)	N
1019	chr2	56922704	56922705	rs141826247	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs141826247-?	NR	3E-10	(Ep-CAM)	1.56986	[1.08-2.06] unit increase	Illumina [11901634] (imputed)	N
1019	chr2	57009057	57009058	rs758566456	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2p16.1	AC008173.1	rs758566456-T	0.9984	9E-6		1.2774	[0.71-1.84] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1020	chr2	57095272	57095273	rs10165631	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p16.1	NR	rs10165631-?		6E-7				Illumina [4322238] (imputed)	N
1020	chr2	57130992	57130993	rs62162249	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	2p16.1	NR	rs62162249-?	NR	6E-6		0.1919	[0.11-0.27] unit decrease	Illumina [at least 560000] (imputed)	N
1020	chr2	57132506	57132507	rs10201460	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.1	NR	rs10201460-C	0.01045	2E-8	(CES1)	13.07	NR unit increase	Illumina [1671387] (imputed)	N
1020	chr2	57141731	57141732	rs56242312	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	2p16.1	NR	rs56242312-A	0.9	8E-6		0.19	[0.11-0.27] unit decrease	Illumina [14638245] (imputed)	N
1021	chr2	57178442	57178443	rs12465938	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	ENSG00000238690	rs12465938-T	NR	2E-8		0.016830254	[0.011-0.023] unit increase	Affymetrix [NR]	N
1021	chr2	57225630	57225631	rs2163048	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2p16.1	ENSG00000238690	rs2163048-?	NR	1E-8		5.679	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1021	chr2	57225630	57225631	rs2163048	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2p16.1	ENSG00000238690	rs2163048-?	NR	3E-6		4.643	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1021	chr2	57231288	57231289	rs13003102	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	2p16.1	NR	rs13003102-?	NR	2E-6		0.201	[0.12-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
1022	chr2	57287410	57287411	rs1116357	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	2p16.1	CCDC85A	rs1116357-G	0.279	7E-10	(Japanese)	1.09	[1.06-1.12]	Illumina [7521072] (imputed)	N
1022	chr2	57287410	57287411	rs1116357	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	2p16.1	CCDC85A	rs1116357-?	NR	5E-6		1.04	[ 1.02 - 1.06 ]	Illumina [7521072] (imputed)	N
1022	chr2	57351713	57351719	rs68014817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.1		rs68014817-T	NR	8E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1022	chr2	57351713	57351719	rs68014817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p16.1		rs68014817-T	NR	4E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1022	chr2	57351713	57351719	rs68014817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.1		rs68014817-T	NR	3E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1022	chr2	57370260	57370261	rs62158436	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	2p16.1	NR	rs62158436-?	NR	8E-6		0.1782	[0.1-0.256] unit decrease	Illumina [at least 560000] (imputed)	N
1022	chr2	57383072	57383073	rs6732134	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs6732134-A	0.3951	2E-9	(MTAG)	0.0141	[0.0096-0.0186] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr2	57383132	57383133	rs3948495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs3948495-T	0.4079	4E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1022	chr2	57383132	57383133	rs3948495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs3948495-T	0.4079	1E-10	(MTAG)	0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1022	chr2	57402201	57402202	rs76543969	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs76543969-?	NR	1E-12	(Ep-CAM)	1.83909	[1.33-2.34] unit increase	Illumina [11901634] (imputed)	N
1022	chr2	57404833	57404834	rs889956	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	ENSG00000271115	rs889956-A	NR	5E-8		5.452	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1022	chr2	57404833	57404834	rs889956	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2p16.1	intergenic	rs889956-A	0.397	2E-7		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1022	chr2	57405978	57405979	rs1424636	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	ENSG00000271115	rs1424636-A	NR	6E-9		0.017427998	[0.012-0.023] unit decrease	Affymetrix [NR]	N
1022	chr2	57407648	57407649	rs1424638	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	ENSG00000271115	rs1424638-T	NR	2E-11		0.019644866	[0.014-0.025] unit increase	Affymetrix [NR]	N
1022	chr2	57407808	57407809	rs13028231	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2p16.1		rs13028231-?	NR	2E-8				NR [7857346] (imputed)	N
1023	chr2	57410633	57410634	rs11676604	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	2p16.1	NR	rs11676604-?	NR	9E-6		0.0181	[0.01-0.026] unit increase	Illumina [at least 560000] (imputed)	N
1023	chr2	57431743	57431744	rs73943852	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p16.1	NR	rs73943852-?	NR	4E-8				Illumina [7760689] (imputed)	N
1023	chr2	57463172	57463173	rs74584788	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p16.1	RP11-443I9.1	rs74584788-T	0.9755	7E-6		0.0928	[0.052-0.133] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1024	chr2	57542863	57542864	rs143306179	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p16.1	intergenic	rs143306179-C	0.0131389034278534	5E-6	(G_Odoribacter_HB)	1.39296	[0.79-1.99] unit decrease	Illumina [7711310] (imputed)	N
1024	chr2	57646506	57646507	rs11676537	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	2p16.1		rs11676537-?	NR	7E-9		2.5464	[1.68-3.41] unit increase	Affymetrix [NR] (imputed)	N
1025	chr2	57677415	57677416	rs2139123	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	2p16.1	intergenic	rs2139123-A	0.27	3E-6		0.165	[0.096-0.234] unit decrease	Illumina [6380737] (imputed)	N
1025	chr2	57699393	57699394	rs55637551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs55637551-A	0.7133	2E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1025	chr2	57701659	57701660	rs56791201	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	6,149 African American individuals	NA	2p16.1	NR	rs56791201-T	0.265	1E-8		304.519	[200.37-408.67] unit decrease	Affymetrix, Illumina [12990252] (imputed)	N
1025	chr2	57741087	57741088	rs820970	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	LOC10013195	rs820970-G	NR	5E-6	(East Asian)	1.123	[1.07-1.18]	Illumina [6627481] (imputed)	N
1025	chr2	57741087	57741088	rs820970	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p16.1	intergenic	rs820970-T	NR	6E-6	(Chinese)	1.156	[1.09-1.22]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1025	chr2	57743325	57743325	rs35646137	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	2p16.1	NR	rs35646137-?	NR	1E-6		0.0193	[0.011-0.027] unit decrease	Illumina [at least 560000] (imputed)	N
1025	chr2	57787192	57787193	rs577836513	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs577836513-?	NR	5E-6		4.577	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1026	chr2	57813172	57813173	rs10175979	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2p16.1	NR	rs10175979-T	0.6506	8E-7		0.0061	[0.0037-0.0085] unit increase	NR [7666894] (imputed)	N
1026	chr2	57826027	57826028	rs11125721	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2p16.1		rs11125721-?	NR	2E-8				NR [7857346] (imputed)	N
1026	chr2	57826027	57826028	rs11125721	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	SNORD78	rs11125721-A	NR	5E-9		0.017576473	[0.012-0.023] unit increase	Affymetrix [NR]	N
1026	chr2	57833946	57833947	rs58783610	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	2p16.1	NR	rs58783610-C	0.2093	3E-6		0.1734	[0.1-0.25] unit decrease	Illumina [10677593] (imputed)	N
1026	chr2	57857098	57857099	rs6748662	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.1	NR	rs6748662-?	NR	5E-9				Affymetrix [NR]	N
1026	chr2	57917221	57917222	rs9789400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	CTD-2026C7.1	rs9789400-T	NR	9E-9		0.0168176	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1026	chr2	57921231	57921232	rs10196493	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs10196493-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1026	chr2	57923005	57923006	rs13012916	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	ENSG00000271615	rs13012916-T	NR	2E-8		0.017165402	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1026	chr2	57930014	57930015	rs10193760	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	2p16.1	CTD, 2026C7.1	rs10193760-C	0.4443	9E-14		0.017075049	[0.012-0.022] unit decrease	NR [9417325] (imputed)	N
1027	chr2	57934054	57934055	rs13026414	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	2p16.1	intergenic	rs13026414-C	.576	2E-9	(All GGE)	1.23	[1.15-1.32]	Affymetrix [4560000] (imputed)	N
1027	chr2	57941286	57941287	rs1380703	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	2p16.1	LOC647016, LOC100131953	rs1380703-G	NR	2E-11		1.036		NR [14661600] (imputed)	N
1027	chr2	57941286	57941287	rs1380703	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Sleep duration	112,411 European ancestry male individuals	NA	2p16.1	NR	rs1380703-G	0.38	2E-9		0.027	[0.018-0.036] unit decrease	Affymetrix [at least 12428592] (imputed)	N
1027	chr2	57941286	57941287	rs1380703	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	2p16.1	LOC647016, VRK2, LOC100131953	rs1380703-A	0.618	8E-8		0.025	[0.015-0.035] hours increase	Affymetrix [up to 73355677] (imputed)	N
1027	chr2	57941286	57941287	rs1380703	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Sleep duration (oversleepers vs undersleepers)	10,102 British oversleeper individuals, 28,980 British undersleeper indivdiuals	NA	2p16.1	VRK2	rs1380703-A	0.62	8E-8		1.06	[1.04-1.08]	NR [16761225] (imputed)	N
1027	chr2	57941286	57941287	rs1380703	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Sleep duration	127,573 British individuals	47,180 individuals	2p16.1	VRK2	rs1380703-A	0.62	3E-10		0.025	[0.017-0.033] hour increase	NR [16761225] (imputed)	N
1027	chr2	57942324	57942325	rs7606466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	CTD-2026C7.1	rs7606466-C	NR	3E-8		0.0159943	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1027	chr2	57942324	57942325	rs7606466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p16.1	NR	rs7606466-G	0.569887788578693	1E-8		0.006501685	[0.0043-0.0088] unit increase	NR [NR]	N
1027	chr2	57942324	57942325	rs7606466	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p16.1	NR	rs7606466-G	0.569887788578693	3E-8		0.006907627	[0.0045-0.0093] unit increase	NR [NR]	N
1027	chr2	57942986	57942987	rs10496076	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2p16.1	VRK2	rs10496076-T	0.37	1E-11		0.007	[0.005-0.009] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1027	chr2	57948002	57948003	rs17049085	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p16.1	NR	rs17049085-T	0.12326	4E-9		0.056083716	[0.037-0.075] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1027	chr2	57948002	57948003	rs17049085	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p16.1	Intergenic	rs17049085-T	0.8812	3E-9		0.026	[0.017-0.035] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1027	chr2	57950345	57950346	rs4671319	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Epilepsy	14,534 European ancestry cases, 531 Han Chinese ancestry cases, 147 African American cases, 24,218 European ancestry controls, 2,875 Han Chinese ancestry controls, 2,584 African American controls	NA	2p16.1	BCL11A, FANCL	rs4671319-G	0.44	8E-9		5.77	unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1027	chr2	57951207	57951208	rs10196378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	CTD-2026C7.1	rs10196378-T	NR	3E-10		0.0183146	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1027	chr2	57956087	57956088	rs13025126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p16.1		rs13025126-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1027	chr2	57957571	57957572	rs10186791	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p16.1	NR	rs10186791-A	0.371027	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
1027	chr2	57959286	57959287	rs55873931	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs55873931-?	NR	8E-8		5.374	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1027	chr2	57961228	57961229	rs41335055	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	2p16.1	VRK2	rs41335055-T	NR	5E-9		0.849	[0.804-0.897]	Illumina [3742365] (imputed)	N
1027	chr2	57961601	57961602	rs13011472	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2p16.1	NR	rs13011472-?		1E-8				NR [8377093]	N
1027	chr2	57961601	57961602	rs13011472	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	intergenic	rs13011472-G	0.482309	9E-7	(males)	0.0113	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1027	chr2	57961601	57961602	rs13011472	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	intergenic	rs13011472-G	0.482309	6E-8	(females)	0.01432	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1027	chr2	57961601	57961602	rs13011472	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2p16.1	intergenic	rs13011472-G	0.482309	1E-11		0.01299	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1027	chr2	57973817	57973818	rs7557715	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	CTD-2026C7.1	rs7557715-C	NR	4E-13		0.0235453	[0.017-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1027	chr2	57973817	57973818	rs7557715	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	C1orf210, TIE1, MPL, CDC20, ELOVL1, MED8, SZT2, HYI	rs7557715-?		1E-10				NR [7428630] (imputed)	N
1027	chr2	57975713	57975714	rs57681866	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p16.1	intergenic	rs57681866-G	0.9385	1E-6		1.1236713		NR [9372253] (imputed)	N
1027	chr2	57975713	57975714	rs57681866	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	2p16.1	intergenic	rs57681866-G	0.9384	2E-7		1.1913697	[NR]	NR [9372253] (imputed)	N
1027	chr2	57980206	57980207	rs181846593	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs181846593-?	NR	7E-13	(Ep-CAM)	1.81104	[1.32-2.31] unit increase	Illumina [11901634] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	2p16.1		rs11682175-?	NR	2E-11				NR [2625067]	N
1027	chr2	57987592	57987593	rs11682175	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	2p16.1		rs11682175-?	NR	4E-8				NR [2625067]	N
1027	chr2	57987592	57987593	rs11682175	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2p16.1	NR	rs11682175-T	0.5537	4E-12		0.07729809	[0.055-0.099] unit decrease	NR [NR]	N
1027	chr2	57987592	57987593	rs11682175	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	2p16.1	NR	rs11682175-T	NR	2E-8		5.594	NR z score decrease	NR [NR]	N
1027	chr2	57987592	57987593	rs11682175	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2p16.1	NR	rs11682175-?		5E-12				NR [8377093]	N
1027	chr2	57987592	57987593	rs11682175	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	2p16.1	NR	rs11682175-?		1E-11				NR [520857]	N
1027	chr2	57987592	57987593	rs11682175	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2p16.1	NR	rs11682175-?		1E-9				NR [520857]	N
1027	chr2	57987592	57987593	rs11682175	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	2p16.1	NR	rs11682175-C	NR	2E-11		1.0309278		NR [NR] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2p16.1	NR	rs11682175-?	NR	4E-12				Illumina [up to 5582932] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2p16.1		rs11682175-C	0.4734	1E-13		0.01825	[0.013-0.023] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	LOC10013195	rs11682175-C	NR	2E-11	(EA)	1.0764263	[1.06-1.1]	Illumina [6627481] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	2p16.1	VRK2	rs11682175-C	0.48	5E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2p16.1	VRK2	rs11682175-T	0.46613	1E-8		5.7	z score decrease	NR [~ 10847151] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2p16.1	FANCL, VRK2	rs11682175-?		1E-12		1.0752687	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1027	chr2	57987592	57987593	rs11682175	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs11682175-C	NR	1E-12		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1027	chr2	57987592	57987593	rs11682175	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2p16.1	FANCL, VRK2	rs11682175-C	0.458	1E-11		1.0718113	[1.05-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
1027	chr2	57988193	57988194	rs11688767	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2p16.1		rs11688767-?	NR	6E-32		0.0314	unit decrease	NR [NR]	N
1027	chr2	57988193	57988194	rs11688767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	CTD-2026C7.1	rs11688767-T	NR	2E-8		0.0175171	[0.011-0.024] unit increase	Affymetrix [323858] (imputed)	N
1027	chr2	57988193	57988194	rs11688767	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2p16.1	Intergenic	rs11688767-?		2E-14				NR [6786993] (imputed)	N
1027	chr2	57988193	57988194	rs11688767	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p16.1	ENSG00000271615	rs11688767-?	NR	2E-12		0.014326841	[0.01-0.018] unit increase	NR [7306098]	N
1027	chr2	57988193	57988194	rs11688767	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs11688767-A	NR	2E-8		5.655	z score decrease	Affymetrix [10847151] (imputed)	N
1027	chr2	57988193	57988194	rs11688767	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	2p16.1	NR	rs11688767-A	NR	3E-8		5.533	z score decrease	Affymetrix [10847151] (imputed)	N
1027	chr2	57995347	57995348	rs13016665	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p16.1		rs13016665-C	0.577	2E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1027	chr2	58002881	58002882	rs6754296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs6754296-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1027	chr2	58007904	58007905	rs112345168	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	CTD-2026C7.1	rs112345168-A	NR	2E-12		0.0227519	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1027	chr2	58011696	58011697	rs1568450	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2p16.1	VRK2	rs1568450-A	0.3716	1E-10		0.014815973	[0.01-0.019] unit decrease	Affymetrix [11514936] (imputed)	N
1027	chr2	58012832	58012833	rs1568452	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	2p16.1		rs1568452-?	NR	1E-8				NR [8243736]	N
1027	chr2	58012832	58012833	rs1568452	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	2p16.1	NR	rs1568452-T	0.3851	3E-40		1.03	[1.025-1.034]	NR [8098588] (imputed)	N
1027	chr2	58030961	58030962	rs2717071	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	2p16.1	VRK2	rs2717071-A	0.628	1E-9	(EA)	0.03377	[0.023-0.045] unit increase	Affymetrix [up to 12500000] (imputed)	N
1027	chr2	58031248	58031249	rs1851138	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	2p16.1	CCDC85A, VRK2	rs1851138-?	NR	6E-6		6.833	unit increase (EA, Australian cohort)	Illumina [610255]	N
1027	chr2	58035490	58035491	rs2717018	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2p16.1	NR	rs2717018-T	0.6278	5E-15		0.016609011	[0.012-0.021] unit increase	Affymetrix [10613246] (imputed)	N
1027	chr2	58035490	58035491	rs2717018	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p16.1	NR	rs2717018-T	0.642	5E-12		0.01237443	[0.0089-0.0159] unit increase	Affymetrix [NR] (imputed)	N
1027	chr2	58035554	58035555	rs2683616	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	2p16.1	VRK2	rs2683616-A	0.624	5E-10		6.22	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
1027	chr2	58037203	58037203	rs11433420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p16.1	NR	rs11433420-T	0.358746	1E-9		0.0191042	[0.013-0.025] unit increase	Affymetrix [16577313] (imputed)	N
1027	chr2	58039681	58039682	rs72804575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.1		rs72804575-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1027	chr2	58041261	58041262	rs73944114	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2p16.1		rs73944114-G	NR	4E-6		0.5378	unit increase	Illumina [8524982] (imputed)	N
1027	chr2	58041935	58041936	rs2717046	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	2p16.1	CTD, 2026C7.1	rs2717046-C	0.38	8E-14		7.4786487	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1027	chr2	58041935	58041936	rs2717046	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	2p16.1	NR	rs2717046-T	0.367	1E-8		1.034	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1027	chr2	58042240	58042241	rs1402398	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2p16.1	VRK2	rs1402398-A	0.6274	1E-12		7.098	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1027	chr2	58042240	58042241	rs1402398	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	2p16.1	NR	rs1402398-A	0.6279	3E-9		5.94	[NR] unit increase	Affymetrix [7003540] (imputed)	N
1027	chr2	58042240	58042241	rs1402398	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	2p16.1	FANCL, BCL11A	rs1402398-G	0.36	1E-11		6.79	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1027	chr2	58051768	58051769	rs12185644	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Childhood absence epilepsy	778 European ancestry cases, 24,218 European ancestry controls	NA	2p16.1	FANCL, BCL11A	rs12185644-C	0.29	5E-10		6.24	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1027	chr2	58059802	58059803	rs2947349	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	2p16.1	VRK2, FANCL	rs2947349-C	0.26	1E-8	(GGE)	1.23	[1.16-1.31]	Affymetrix, Illumina [NR] (imputed)	N
1028	chr2	58068740	58068741	rs1106090	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs1106090-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1028	chr2	58068740	58068741	rs1106090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs1106090-A	0.6228	1E-10		0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr2	58068824	58068825	rs17049167	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs17049167-?	NR	2E-7		5.161	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1028	chr2	58071592	58071593	rs80256351	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2p16.1	NR	rs80256351-A	0.0557	1E-10		0.15337054	[0.11-0.2] unit decrease	NR [NR]	N
1028	chr2	58071592	58071593	rs80256351	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2p16.1	NR	rs80256351-?		2E-10				NR [8377093]	N
1028	chr2	58071592	58071593	rs80256351	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2p16.1	NR	rs80256351-?		9E-11				NR [520857]	N
1028	chr2	58071592	58071593	rs80256351	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2p16.1	Intergenic	rs80256351-?		3E-9				NR [6786993] (imputed)	N
1028	chr2	58071592	58071593	rs80256351	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p16.1	intergenic	rs80256351-C	NR	5E-8		1.1135857	[1.07-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1028	chr2	58072604	58072605	rs60589532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs60589532-A	0.9345	3E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr2	58072659	58072660	rs17049185	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p16.1	VRK2, FANCL	rs17049185-?	NR	3E-9		0.0164143	[0.011-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1028	chr2	58088437	58088438	rs77071813	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs77071813-?	NR	3E-9				NR [2625067]	N
1028	chr2	58090745	58090746	rs17049188	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.1	NR	rs17049188-?	NR	3E-6				Affymetrix [NR]	N
1028	chr2	58094872	58094873	rs2717068	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	2p16.1	intergenic	rs2717068-T	0.412	4E-7	(GAE)	1.27	[1.16-1.40]	Affymetrix [4560000] (imputed)	N
1028	chr2	58102106	58102107	rs59159185	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p16.1	NR	rs59159185-?	NR	1E-8		1.10916	[1.07-1.14]	Affymetrix, Illumina [12447948] (imputed)	N
1028	chr2	58110968	58110969	rs2717063	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p16.1	NR	rs2717063-A	0.588	5E-11		0.0088418	[0.0062-0.0115] unit increase	NR [~ 9732723] (imputed)	N
1028	chr2	58115023	58115023	rs781157235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	VRK2	rs781157235-G	NR	8E-11		0.018913	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1028	chr2	58115023	58115023	rs781157235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p16.1	VRK2	rs781157235-G	NR	1E-9		0.017816	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1028	chr2	58119573	58119574	rs2678915	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	VRK2, FANCL	rs2678915-?		6E-17				NR [7428630] (imputed)	N
1028	chr2	58122649	58122650	rs7595529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p16.1		rs7595529-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1028	chr2	58122649	58122650	rs7595529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs7595529-A	0.9213	2E-12	(MTAG)	0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr2	58122649	58122650	rs7595529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs7595529-A	0.926	4E-11	(MTAG)	0.029	[0.02-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr2	58123723	58123724	rs1356544	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.1		rs1356544-T	0.41	1E-30		11.52	z score increase	Affymetrix [9061022] (imputed)	N
1028	chr2	58135010	58135011	rs908730	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs908730-?		4E-9				NR [7428630] (imputed)	N
1028	chr2	58135484	58135485	rs17049244	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs17049244-T	0.9231	6E-10	(MTAG)	0.0192	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr2	58137754	58137755	rs2678904	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.1	NR	rs2678904-G	0.4021	1E-17				NR [9056863] (imputed)	N
1028	chr2	58137754	58137755	rs2678904	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs2678904-?	NR	7E-19				Affymetrix [~ 8270000] (imputed)	N
1028	chr2	58138191	58138192	rs75575209	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	VRK2	rs75575209-T	NR	9E-9	(EA)	1.118068	[1.08-1.16]	Illumina [6627481] (imputed)	N
1028	chr2	58138191	58138192	rs75575209	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	VRK2	rs75575209-T	NR	8E-9		1.1098778	[1.07-1.15]	Illumina [6627481] (imputed)	N
1028	chr2	58138191	58138192	rs75575209	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p16.1	VRK2	rs75575209-T	NR	1E-8		1.1086475	[1.07-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1028	chr2	58138191	58138192	rs75575209	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs75575209-T	NR	1E-8		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1028	chr2	58143307	58143308	rs112176860	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	2p16.1	NR	rs112176860-A	0.0492	2E-8		0.053398855	[0.035-0.072] unit decrease	NR [NR]	N
1028	chr2	58149555	58149555	rs10694743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	VRK2	rs10694743-G	NR	2E-8		0.0160439	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1028	chr2	58150873	58150874	rs147938208	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs147938208-?	NR	5E-13	(Ep-CAM)	1.81803	[1.32-2.31] unit increase	Illumina [11901634] (imputed)	N
1028	chr2	58153601	58153602	rs2678871	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.1		rs2678871-G	0.41	9E-59		16.16	z score increase	Affymetrix [9061022] (imputed)	N
1028	chr2	58156771	58156772	rs2176546	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2p16.1	FANCL, VRK2	rs2176546-C		1E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
1028	chr2	58158282	58158283	rs2678880	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.1		rs2678880-C	0.41	6E-49		14.7	z score increase	Affymetrix [9061022] (imputed)	N
1028	chr2	58158282	58158283	rs2678880	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.1	NR	rs2678880-C	0.4017	1E-17				NR [9056863] (imputed)	N
1028	chr2	58166467	58166468	rs2717031	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2717031-?	NR	3E-11				NR [NR]	N
1028	chr2	58166467	58166468	rs2717031	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2717031-?	NR	1E-10				NR [NR]	N
1028	chr2	58166467	58166468	rs2717031	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2717031-?	NR	4E-11				NR [NR]	N
1028	chr2	58166768	58166769	rs2717033	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2p16.1	FANCL	rs2717033-T	0.389236	3E-8		5.55	z score decrease	NR [~ 10847151] (imputed)	N
1028	chr2	58167139	58167140	rs2678892	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	2p16.1	NR	rs2678892-G	0.3981	3E-8		0.0104	[0.0067-0.0141] unit increase	Illumina [NR] (imputed)	N
1028	chr2	58167142	58167143	rs2678893	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2678893-?	NR	1E-8				NR [NR]	N
1028	chr2	58167142	58167143	rs2678893	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2678893-?	NR	8E-10				NR [NR]	N
1028	chr2	58167142	58167143	rs2678893	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p16.1		rs2678893-?	NR	6E-11				NR [NR]	N
1028	chr2	58168097	58168098	rs2717036	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	2p16.1	NR	rs2717036-T	0.4008	6E-11		0.0186	[0.013-0.024] unit decrease	Illumina [NR] (imputed)	N
1028	chr2	58168097	58168098	rs2717036	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	2p16.1	NR	rs2717036-T	0.3942	1E-11		0.0147	[0.01-0.019] unit decrease	Illumina [NR] (imputed)	N
1028	chr2	58168097	58168098	rs2717036	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	2p16.1	NR	rs2717036-T	0.3942	9E-10		0.0149	[0.01-0.02] unit decrease	Illumina [NR] (imputed)	N
1028	chr2	58168338	58168339	rs72808453	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs72808453-A	0.918	4E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1028	chr2	58169417	58169418	rs2678897	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p16.1	NR	rs2678897-A	0.606260303010776	8E-12		0.006426022	[0.0046-0.0083] unit increase	NR [NR]	N
1028	chr2	58169417	58169418	rs2678897	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p16.1	NR	rs2678897-A	0.606260303010776	2E-11		0.010362942	[0.0073-0.0134] unit increase	NR [NR]	N
1028	chr2	58169417	58169418	rs2678897	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p16.1	NR	rs2678897-A	0.606260303010776	2E-11		0.0065491428	[0.0046-0.0085] unit increase	NR [NR]	N
1028	chr2	58169417	58169418	rs2678897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p16.1		rs2678897-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1028	chr2	58169417	58169418	rs2678897	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs2678897-A	0.6108	2E-13	(MTAG)	0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1028	chr2	58169417	58169418	rs2678897	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs2678897-G	0.3892	9E-15		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1028	chr2	58169417	58169418	rs2678897	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	2p16.1	VRK2	rs2678897-A	0.388562	3E-9		5.93	z score increase	NR [10847151] (imputed)	N
1028	chr2	58169417	58169418	rs2678897	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	2p16.1	Intergenic	rs2678897-A		4E-7		0.074	[0.045-0.103] unit increase	Affymetrix [7207648] (imputed)	N
1028	chr2	58171219	58171220	rs1518393	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2p16.1	VRK2	rs1518393-A		4E-8		0.981	[NR]	Affymetrix [up to 79000000] (imputed)	N
1028	chr2	58171219	58171220	rs1518393	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs1518393-C	0.619	1E-13		0.00832474	[0.0061-0.0105] unit increase	NR [9732723] (imputed)	N
1028	chr2	58171219	58171220	rs1518393	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs1518393-C	0.619	1E-10		0.016860126	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
1028	chr2	58171286	58171287	rs1518394	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p16.1	VRK2	rs1518394-G		1E-8		0.0049	[0.0031-0.0067] unit increase	Affymetrix [13304133] (imputed)	N
1028	chr2	58172106	58172107	rs2717041	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p16.1	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs2717041-?		2E-8				NR [7428630] (imputed)	N
1028	chr2	58172110	58172111	rs72808464	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs72808464-?	NR	4E-6		4.639	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1028	chr2	58172394	58172395	rs77902252	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	2p16.1	NR	rs77902252-T	NR	4E-8		5.492	NR z score increase	NR [NR]	N
1028	chr2	58179018	58179019	rs2717043	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	2p16.1	VRK2	rs2717043-C	0.3857	7E-27		0.024796827	[0.02-0.03] unit decrease	NR [9417325] (imputed)	N
1028	chr2	58179018	58179019	rs2717043	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p16.1	NR	rs2717043-C	NR	2E-10		0.01528	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1028	chr2	58179018	58179019	rs2717043	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p16.1	VRK2	rs2717043-T	0.372674	2E-10		6.37	z score increase	NR [10847151] (imputed)	N
1028	chr2	58192904	58192905	rs17049270	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.1		rs17049270-T	0.09593	2E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1029	chr2	58196109	58196110	rs2030237	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	2p16.1	VRK2	rs2030237-A	0.5837	5E-9		1.0388901	[NR]	Illumina [12493443] (imputed)	N
1029	chr2	58200747	58200748	rs12713370	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	2p16.1	NR	rs12713370-?		2E-9				NR [11140414]	N
1029	chr2	58200747	58200748	rs12713370	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	2p16.1	NR	rs12713370-A	NR	2E-9		6.035	z score decrease	Affymetrix [10847151] (imputed)	N
1029	chr2	58201201	58201202	rs10172295	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	2p16.1	VRK2	rs10172295-?	NR	3E-8		0.0138013	[0.0089-0.0187] unit decrease	Affymetrix [25921788] (imputed)	N
1029	chr2	58208073	58208074	rs1518395	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2p16.1	NR	rs1518395-?	NR	1E-6		1.0090817	[1.01-1.01]	NR [8968716] (imputed)	N
1029	chr2	58208073	58208074	rs1518395	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p16.1	NR	rs1518395-G	0.613354488492109	4E-10		0.0074290186	[0.0051-0.0098] unit increase	NR [NR]	N
1029	chr2	58208073	58208074	rs1518395	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p16.1	NR	rs1518395-G	0.613354488492109	7E-9		0.00787058	[0.0052-0.0105] unit increase	NR [NR]	N
1029	chr2	58208073	58208074	rs1518395	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	VRK2	rs1518395-G	NR	1E-12	(East Asian)	1.1376565	[1.1-1.17]	Illumina [6627481] (imputed)	N
1029	chr2	58208073	58208074	rs1518395	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p16.1	VRK2	rs1518395-A	NR	4E-13	(Chinese)	1.1600928	[1.12-1.2]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1029	chr2	58208073	58208074	rs1518395	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	2p16.1	VRK2	rs1518395-G	0.61298	4E-12		0.032	[0.02-0.044] unit increase	Illumina [1220000] (imputed)	N
1029	chr2	58210521	58210522	rs6717480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p16.1		rs6717480-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1029	chr2	58217343	58217344	rs77622099	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2p16.1	intergenic	rs77622099-A	0.090851	3E-9		5.958	z score increase	Illumina [18485882] (imputed)	N
1029	chr2	58222927	58222928	rs2312147	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p16.1	VRK2	rs2312147-T	0.376046	2E-13		7.34	z score decrease	NR [10847151] (imputed)	N
1029	chr2	58222927	58222928	rs2312147	19571808	Stefansson H	2009-07-01	Nature	Common variants conferring risk of schizophrenia.	Schizophrenia	2,663 European ancestry cases, 13,498 European ancestry controls	10,282 European ancestry cases, 21,093 European ancestry controls	2p16.1	VRK2	rs2312147-C	NR	3E-7		1.09	[NR]	Illumina [314868]	N
1029	chr2	58229427	58229428	rs7573056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	VRK2	rs7573056-C	NR	2E-9		0.0187914	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
1029	chr2	58235385	58235386	rs1518400	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with epithelioid cells	285 European ancestry cases, 5,199 European ancestry controls	NA	2p16.1		rs1518400-T	0.23	4E-6		1.53		Illumina [10258281] (imputed)	N
1029	chr2	58237075	58237076	rs6719889	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	2p16.1	NR	rs6719889-C	NR	2E-9	(AA)	0.11	NR unit increase	Affymetrix [723305]	N
1029	chr2	58237075	58237076	rs6719889	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	2p16.1	NR	rs6719889-C	NR	1E-6				Affymetrix [723305]	N
1029	chr2	58242036	58242037	rs60152647	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs60152647-T	NR	1E-8		5.712	z score increase	Affymetrix [10847151] (imputed)	N
1029	chr2	58258465	58258466	rs77733682	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs77733682-?	NR	2E-9	(Ep-CAM)	1.37946	[0.93-1.83] unit increase	Illumina [11901634] (imputed)	N
1029	chr2	58272501	58272502	rs961522	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	214,547 European ancestry individuals	NA	2p16.1	VRK2	rs961522-T	0.39248	9E-23		0.0278338	[0.022-0.033] unit decrease	NR [16567047] (imputed)	N
1029	chr2	58272501	58272502	rs961522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p16.1	VRK2	rs961522-T	NR	1E-10		0.0185168	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1029	chr2	58275665	58275666	rs986512	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p16.1	NR	rs986512-A	0.6368	2E-9		0.0112	[0.0075-0.0149] unit increase	NR [~ 27400000] (imputed)	N
1029	chr2	58276279	58276280	rs4672229	27702942	Tang CS	2016-10-03	Hum Mol Genet	Trans-ethnic meta-analysis of genome-wide association studies for Hirschsprung disease.	Hirschsprung disease	212 European ancestry cases, 173 Chinese ancestry cases, 122 Korean ancestry cases, 202 European ancestry controls, 615 Chinese ancestry controls, 374 Korean ancestry controls	NA	2p16.1	VRK2, FANCL	rs4672229-A	NR	3E-8	(East Asian, recessive)	2.48	[1.80-3.41]	Affymetrix, Illumina [at least 6512116] (imputed)	N
1029	chr2	58284638	58284638	rs762952217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	VRK2	rs762952217-CTCTT	NR	1E-8		0.0176748	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1029	chr2	58284638	58284638	rs762952217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	VRK2	rs762952217-CTCTT	NR	1E-8		0.0179237	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1029	chr2	58297663	58297664	rs10205421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs10205421-A	0.6579	7E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr2	58297663	58297664	rs10205421	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p16.1	Intergenic	rs10205421-G	0.3421	5E-13		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr2	58299325	58299326	rs10188070	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs10188070-A	NR	1E-9		6.076	z score decrease	Affymetrix [10847151] (imputed)	N
1029	chr2	58299325	58299326	rs10188070	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p16.1	NR	rs10188070-A	0.34937	6E-10		6.19	z score decrease	NR [10847151] (imputed)	N
1029	chr2	58299325	58299326	rs10188070	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	2p16.1	NR	rs10188070-A	0.34937	2E-8		5.66	z score decrease	NR [10847151] (imputed)	N
1029	chr2	58312821	58312822	rs143622417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs143622417-?	NR	5E-6		4.551	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1029	chr2	58316813	58316814	rs1051061	27922604	Yu H	2016-12-06	Mol Psychiatry	Common variants on 2p16.1, 6p22.1 and 10q24.32 are associated with schizophrenia in Han Chinese population.	Schizophrenia	4,384 Han Chinese ancestry cases and 5,770 Han Chinese ancestry controls	4,339 Han Chinese ancestry cases and 7,043 Han Chinese ancestry controls	2p16.1	VRK2	rs1051061-?		1E-10		1.17	[1.12-1.22]	Illumina [at least 473583] (imputed)	N
1030	chr2	58344791	58344792	rs13018289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	VRK2	rs13018289-T	NR	3E-11		0.023407	[0.017-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1030	chr2	58344791	58344792	rs13018289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	VRK2	rs13018289-T	NR	6E-11		0.0231666	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1030	chr2	58377013	58377014	rs12713372	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	VRK2	rs12713372-C	0.565758	8E-6		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1030	chr2	58377013	58377014	rs12713372	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	VRK2	rs12713372-C	0.565758	8E-9		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
1030	chr2	58382489	58382490	rs848293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	VRK2	rs848293-A	NR	3E-9		0.018381	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1030	chr2	58382489	58382490	rs848293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	VRK2	rs848293-A	NR	1E-9		0.0189551	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1030	chr2	58382489	58382490	rs848293	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	2p16.1	NR	rs848293-?	NR	9E-17		1.1235955		Affymetrix, Illumina [9938587] (imputed)	N
1030	chr2	58382489	58382490	rs848293	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	2p16.1	NR	rs848293-A	NR	2E-8		5.644	z score decrease	Affymetrix [10847151] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p16.1	NR	rs7596038-?	NR	7E-22		1.088613	[1.07-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	VRK2	rs7596038-C	NR	2E-9	(EA)	1.068262	[1.05-1.09]	Illumina [6627481] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	VRK2	rs7596038-C	NR	1E-13		1.0764263	[1.06-1.1]	Illumina [6627481] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs7596038-T	NR	2E-8		5.593	z score decrease	Affymetrix [10847151] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2p16.1	FANCL, VRK2	rs7596038-?	NR	2E-12		1.07	[1.05-1.09]	Illumina [8000000] (imputed)	N
1030	chr2	58383819	58383820	rs7596038	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2p16.1	intergenic	rs7596038-T	0.4349	3E-9		5.947	z score decrease	Illumina [18485882] (imputed)	N
1030	chr2	58394542	58394543	rs848286	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p16.1	NR	rs848286-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1030	chr2	58394542	58394543	rs848286	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p16.1	NR	rs848286-T	0.36899	2E-11		6.69	z score increase	NR [10847151] (imputed)	N
1030	chr2	58399904	58399905	rs1100190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2p16.1	FANCL	rs1100190-C	NR	7E-10		0.0203503	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1030	chr2	58399904	58399905	rs1100190	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	FANCL	rs1100190-C	NR	8E-11		0.0214349	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1030	chr2	58445872	58445873	rs6742445	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2p16.1	FANCL	rs6742445-T	0.07	4E-16		0.4	[0.31-0.5] unit decrease	Affymetrix [339439]	N
1031	chr2	58462615	58462616	rs72618695	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p16.1	VRK2, FANCL	rs72618695-?	NR	5E-10		0.0159516	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1031	chr2	58476014	58476015	rs2215961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p16.1	EIF3FP3	rs2215961-C	NR	4E-8		0.0174636	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1031	chr2	58481275	58481276	rs138191615	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs138191615-?	NR	2E-11	(Ep-CAM)	1.74397	[1.23-2.26] unit increase	Illumina [11901634] (imputed)	N
1031	chr2	58484171	58484172	rs11690710	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	2p16.1	NR	rs11690710-A	0.341755	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
1031	chr2	58485693	58485694	rs78547376	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2p16.1	intergenic	rs78547376-T	0.903567	4E-9		5.869	z score decrease	Illumina [18485882] (imputed)	N
1031	chr2	58491769	58491770	rs138378949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2p16.1	AC007250.4	rs138378949-T	NR	2E-9		0.0204924	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1031	chr2	58491769	58491770	rs138378949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	AC007250.4	rs138378949-T	NR	3E-10		0.0214219	[0.015-0.028] unit decrease	Affymetrix [127266] (imputed)	N
1031	chr2	58491769	58491770	rs138378949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	AC007250.4	rs138378949-T	NR	9E-11		0.0217354	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1031	chr2	58491769	58491770	rs138378949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	AC007250.4	rs138378949-T	NR	1E-11		0.0228712	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
1031	chr2	58492344	58492345	rs9789483	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.1	FANCL	rs9789483-A	0.634552	2E-9		0.0130724	[0.0089-0.0173] unit increase	NR [16516521] (imputed)	N
1031	chr2	58492344	58492345	rs9789483	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs9789483-A	NR	1E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1031	chr2	58494655	58494656	rs59187049	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p16.1	NR	rs59187049-T	0.304078	5E-10		6.23	z score increase	NR [10847151] (imputed)	N
1031	chr2	58496320	58496321	rs144988294	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs144988294-?	NR	4E-6		4.635	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1031	chr2	58505678	58505679	rs17398913	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs17398913-T	NR	2E-8		5.575	z score decrease	Affymetrix [10847151] (imputed)	N
1031	chr2	58505678	58505679	rs17398913	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p16.1	VRK2	rs17398913-T	0.29624	1E-9		6.08	z score decrease	NR [10847151] (imputed)	N
1031	chr2	58515374	58515375	rs1156588	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	2p16.1	FANCL	rs1156588-A	0.7908	9E-6		0.0083	[0.0046-0.012] unit increase	Affymetrix [~ 7740000] (imputed)	N
1031	chr2	58555478	58555479	rs76481116	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs76481116-G	0.05	5E-6		0.0115755	[0.0066-0.0166] unit decrease	NR [9732723] (imputed)	N
1031	chr2	58565500	58565501	rs6708046	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs6708046-T	0.6227	1E-11	(MTAG)	0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr2	58565500	58565501	rs6708046	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs6708046-T	0.6227	4E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1031	chr2	58565500	58565501	rs6708046	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs6708046-T	0.6227	1E-11	(MTAG)	0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1031	chr2	58576845	58576846	rs72812393	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs72812393-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1031	chr2	58581046	58581047	rs17049478	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p16.1	NR	rs17049478-A	0.072967807643649	1E-8		0.010082693	[0.0066-0.0135] unit increase	NR [NR]	N
1031	chr2	58581046	58581047	rs17049478	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p16.1	NR	rs17049478-A	0.072967807643649	2E-8		0.012220408	[0.0079-0.0165] unit increase	NR [NR]	N
1031	chr2	58581046	58581047	rs17049478	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p16.1	NR	rs17049478-A	0.072967807643649	2E-8		0.015949292	[0.01-0.021] unit increase	NR [NR]	N
1031	chr2	58581046	58581047	rs17049478	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p16.1	NR	rs17049478-A	0.072967807643649	2E-8		0.010138418	[0.0066-0.0137] unit increase	NR [NR]	N
1032	chr2	58592906	58592907	rs759337	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p16.1	FANCL	rs759337-C	0.03846	9E-7	(African)			Illumina [4404269] (imputed)	N
1032	chr2	58596426	58596426	rs11451194	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	2p16.1		rs11451194-?	NR	2E-12				NR [9705931] (imputed)	N
1032	chr2	58601887	58601888	rs17049487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs17049487-C	0.1941	4E-9	(MTAG)	0.0171	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr2	58618544	58618545	rs76045944	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p16.1	NR	rs76045944-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1032	chr2	58635360	58635361	rs66637216	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs66637216-C	0.1229	4E-9	(MTAG)	0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr2	58635683	58635684	rs12479300	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p16.1	NR	rs12479300-A	0.358310508644007	5E-9		0.007477272	[0.005-0.01] unit decrease	NR [NR]	N
1032	chr2	58640981	58640982	rs111546627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs111546627-T	NR	2E-8		0.0239761	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1032	chr2	58656717	58656718	rs62140779	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2p16.1	NR	rs62140779-T	0.824	1E-6		0.027572796	[0.016-0.039] unit increase	Affymetrix [up to 6544775] (imputed)	N
1032	chr2	58658461	58658462	rs146675384	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs146675384-?	NR	2E-13	(Ep-CAM)	1.93505	[1.42-2.45] unit increase	Illumina [11901634] (imputed)	N
1032	chr2	58669883	58669884	rs17049502	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2p16.1	NR	rs17049502-A	0.8055	1E-11		0.0149	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1032	chr2	58672731	58672732	rs2052246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs2052246-C	NR	4E-9		0.0182654	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1032	chr2	58686184	58686185	rs17049509	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	2p16.1	NR	rs17049509-T	NR	1E-8		0.01456	NR unit decrease	NR [7259579]	N
1032	chr2	58688906	58688907	rs2075171	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p16.1	NR	rs2075171-G	NR	1E-8		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7661	8E-6	(women)	0.0279	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7658	4E-7		0.0252	[0.015-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7617	4E-7	(EA)	0.0258	[0.016-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-?	NR	5E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-?	NR	3E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-?	NR	2E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-?	NR	2E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7658	3E-9		0.026	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7658	1E-8	(women)	0.0321	[0.021-0.043] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7617	8E-9	(EA)	0.0263	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58688906	58688907	rs2075171	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	FLJ30838	rs2075171-G	0.7617	1E-7	(EA, women)	0.0308	[0.019-0.042] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1032	chr2	58690264	58690265	rs7579788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs7579788-G	NR	2E-8		0.0189119	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1032	chr2	58690264	58690265	rs7579788	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs7579788-G	NR	3E-10		0.0213528	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1032	chr2	58704448	58704449	rs6743916	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2p16.1	NR	rs6743916-A	0.2927	3E-9		0.01136	[0.0076-0.0151] unit decrease	NR [8968716] (imputed)	N
1032	chr2	58704448	58704449	rs6743916	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs6743916-A	NR	4E-9		5.888	z score decrease	Affymetrix [10847151] (imputed)	N
1032	chr2	58704448	58704449	rs6743916	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p16.1	NR	rs6743916-A	0.30274	2E-10		6.36	z score decrease	NR [10847151] (imputed)	N
1032	chr2	58719446	58719447	rs2215939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2p16.1	LINC01122	rs2215939-T	NR	1E-8		0.018941	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
1032	chr2	58719446	58719447	rs2215939	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs2215939-T	NR	5E-9		0.0193185	[0.013-0.026] unit decrease	Affymetrix [127266] (imputed)	N
1032	chr2	58719446	58719447	rs2215939	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p16.1	NR	rs2215939-?	NR	5E-8		0.0135	[0.0087-0.0183] unit decrease	Affymetrix [10847151] (imputed)	N
1033	chr2	58726872	58726873	rs2019198	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	2p16.1	LINC01122	rs2019198-T	0.173	3E-6		0.013940665	[0.0073-0.0206] unit increase	NR [9417325] (imputed)	N
1033	chr2	58751108	58751109	rs2192899	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs2192899-?	NR	1E-6		4.819	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1033	chr2	58756728	58756729	rs35609938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2p16.1	LINC01122	rs35609938-T	NR	4E-8		0.0172507	[0.011-0.023] unit decrease	Affymetrix [323858] (imputed)	N
1033	chr2	58756728	58756729	rs35609938	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2p16.1	LINC01122	rs35609938-T	NR	3E-8		0.0173392	[0.011-0.023] unit decrease	Affymetrix [127266] (imputed)	N
1033	chr2	58756728	58756729	rs35609938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p16.1	NR	rs35609938-C	0.507493723679628	1E-11		0.0062190155	[0.0044-0.008] unit increase	NR [NR]	N
1033	chr2	58756728	58756729	rs35609938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p16.1	NR	rs35609938-C	0.507493723679628	3E-11		0.0075407084	[0.0053-0.0098] unit increase	NR [NR]	N
1033	chr2	58756728	58756729	rs35609938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p16.1	NR	rs35609938-C	0.507493723679628	2E-11		0.009825571	[0.007-0.0127] unit increase	NR [NR]	N
1033	chr2	58756728	58756729	rs35609938	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p16.1	NR	rs35609938-C	0.507493723679628	2E-11		0.0062796036	[0.0044-0.0081] unit increase	NR [NR]	N
1033	chr2	58756728	58756729	rs35609938	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2p16.1	NR	rs35609938-?	NR	2E-8		0.01321	[0.0086-0.0178] unit decrease	Affymetrix [10847151] (imputed)	N
1033	chr2	58756728	58756729	rs35609938	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2p16.1	FANCL	rs35609938-T	0.494786	9E-10		6.12	z score decrease	NR [10847151] (imputed)	N
1033	chr2	58769041	58769042	rs7608397	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p16.1	NR	rs7608397-T	0.4283	2E-11		0.016853647	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1033	chr2	58782732	58782733	rs17049548	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p16.1	NR	rs17049548-T	NR	6E-9		5.827	z score decrease	Affymetrix [10847151] (imputed)	N
1033	chr2	58787800	58787801	rs72813970	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (fatigue) (ordinal trait)	148,752 European ancestry individuals	NA	2p16.1	LINC01122	rs72813970-G	0.985	6E-9		0.073	[0.048-0.098] unit decrease	NR [9413637] (imputed)	N
1033	chr2	58791419	58791420	rs10197655	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p16.1	LINC01122	rs10197655-A	0.599	4E-9	(Japanese)	0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
1033	chr2	58792376	58792377	rs929641	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.1	NA	rs929641-A	0.5889	8E-14		0.0127	[0.0094-0.016] unit increase	NR [~ 27400000] (imputed)	N
1033	chr2	58792376	58792377	rs929641	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p16.1	NR	rs929641-A	NR	3E-14		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1033	chr2	58792376	58792377	rs929641	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs929641-A	0.586	1E-7	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1033	chr2	58792376	58792377	rs929641	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs929641-A	0.585	4E-7	(EA, women)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1033	chr2	58792376	58792377	rs929641	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs929641-A	0.581	5E-8		0.016	[0.01-0.022] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1033	chr2	58792376	58792377	rs929641	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FANCL	rs929641-A	0.5865	7E-7	(EA, women)	0.022	[0.013-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1033	chr2	58792376	58792377	rs929641	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FANCL	rs929641-A	0.5865	4E-9	(EA)	0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1033	chr2	58792376	58792377	rs929641	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FANCL	rs929641-A	0.5868	4E-8	(EA, women)	0.0242	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1033	chr2	58792376	58792377	rs929641	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FANCL	rs929641-A	0.5868	1E-9	(EA)	0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1033	chr2	58797633	58797634	rs6736025	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs6736025-T	0.4354	3E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Visceral adipose tissue volume	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	4E-8		266.09	g increase	NR [6137607] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Visceral adipose tissue mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	4E-8		251.04	g increase	NR [6137607] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Trunk total mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	2E-8		2.48	kg increase	NR [6137607] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Trunk fat mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	2E-8		2011.4	g increase	NR [6137607] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Android total mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	2E-8		0.49	kg increase	NR [6137607] (imputed)	N
1033	chr2	58799069	58799070	rs7592270	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Android fat mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	2p16.1		rs7592270-T	NR	8E-9		401.91	g increase	NR [6137607] (imputed)	N
1033	chr2	58805944	58805945	rs6718563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs6718563-A	0.564	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr2	58817444	58817445	rs6744844	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs6744844-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1033	chr2	58828430	58828431	rs12612428	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs12612428-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1033	chr2	58830186	58830187	rs77766559	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p16.1	NR	rs77766559-C	0.01916	3E-8	(CLTC)	0.4443	NR unit increase	Illumina [1671387] (imputed)	N
1033	chr2	58833492	58833493	rs6731302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p16.1		rs6731302-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1033	chr2	58833492	58833493	rs6731302	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p16.1	FANCL	rs6731302-A	0.44	2E-9	(Overweight)	1.04	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1033	chr2	58846688	58846689	rs77527549	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs77527549-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1033	chr2	58847435	58847436	rs11892323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs11892323-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1033	chr2	58847952	58847953	rs6545694	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors and depression	6,348 European ancestry responder cases, 191,357 European ancestry healthy controls	NA	2p16.1	FANCL	rs6545694-?		2E-6		1.096	[1.056-1.137]	Illumina [~ 12000000] (imputed)	N
1033	chr2	58849727	58849728	rs116219610	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2p16.1		rs116219610-T	0.1927	5E-14		0.02345	[0.017-0.03] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1033	chr2	58849804	58849805	rs2902142	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p16.1	FANCL	rs2902142-C	0.625064	2E-9		0.00871305	[0.0059-0.0115] unit increase	Affymetrix [12370749]	N
1034	chr2	58853557	58853558	rs1861415	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (CO) interaction in childhood asthma	522 European ancestry children	NA	2p16.1		rs1861415-A	NR	9E-6		0.82	unit increase	Illumina [474792]	N
1034	chr2	58857418	58857419	rs13011109	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p16.1	NR	rs13011109-C	0.393092979831593	1E-14		0.021146797	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1034	chr2	58871657	58871658	rs75539574	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	2p16.1	intergenic	rs75539574-A	NR	8E-11		1.046		NR [14661600] (imputed)	N
1034	chr2	58871657	58871658	rs75539574	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2p16.1	NR	rs75539574-C	NR	3E-19		1.548	unit increase	Affymetrix [14661600] (imputed)	N
1034	chr2	58874587	58874588	rs75242975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs75242975-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1034	chr2	58881671	58881672	rs7582485	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	2p16.1		rs7582485-?	NR	1E-11				NR [7857346] (imputed)	N
1034	chr2	58881671	58881672	rs7582485	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs7582485-C	0.3962	4E-10	(MTAG)	0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1034	chr2	58881671	58881672	rs7582485	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs7582485-C	0.3962	9E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1034	chr2	58881870	58881871	rs10490091	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs10490091-A	0.866	5E-13		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
1034	chr2	58882764	58882765	rs17190618	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	2p16.1	VRK2	rs17190618-T	NR	4E-6		1.6	[0.93-2.27] minutes increase	Affymetrix [up to 73355677] (imputed)	N
1034	chr2	58882764	58882765	rs17190618	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Sleep duration	127,573 British individuals	47,180 individuals	2p16.1	VRK2	rs17190618-A	0.84	5E-12		0.033	[0.023-0.043] hour decrease	NR [16761225] (imputed)	N
1034	chr2	58893064	58893065	rs1861412	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p16.1	NR	rs1861412-A	0.4338	2E-10		1.039	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1034	chr2	58893064	58893065	rs1861412	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.1	NA	rs1861412-A	0.4241	1E-32		0.0202	[0.017-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1034	chr2	58905714	58905715	rs17049683	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p16.1	FANCL	rs17049683-G		7E-10		0.0056	[0.0038-0.0074] unit increase	Affymetrix [13304133] (imputed)	N
1034	chr2	58906315	58906316	rs189223547	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs189223547-?	NR	4E-13	(Ep-CAM)	1.90914	[1.39-2.42] unit increase	Illumina [11901634] (imputed)	N
1034	chr2	58917534	58917535	rs4541244	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p16.1	AC007092.1	rs4541244-T	0.421979	2E-9		0.03427508	[0.023-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
1034	chr2	58921776	58921777	rs13417036	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2p16.1	FANCL, BCL11A	rs13417036-A	0.16	2E-8		1.07	1.05-1.10	Illumina [12557761] (imputed)	N
1034	chr2	58922920	58922921	rs35881094	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	LOC644456/LOC730134	rs35881094-G	0.42621299999999995	1E-15		1.04	[1.03-1.05]	Affymetrix [14661600] (imputed)	N
1034	chr2	58922920	58922921	rs35881094	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	LOC644456/LOC730134	rs35881094-G	0.42621299999999995	5E-13		1.04	[1.03-1.05]	Affymetrix [14661600] (imputed)	N
1034	chr2	58922920	58922921	rs35881094	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	2p16.1	FLJ30838	rs35881094-G	0.43	7E-6		1.16	[NR]	Illumina [7659573] (imputed)	N
1034	chr2	58931534	58931535	rs12987544	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	2p16.1	NR	rs12987544-?	NR	4E-6		0.1226	[0.07-0.175] unit increase	Illumina [at least 560000] (imputed)	N
1034	chr2	58933590	58933591	rs1861410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.1		rs1861410-T	NR	2E-21		0.0158	[0.012-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1034	chr2	58933590	58933591	rs1861410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p16.1		rs1861410-T	NR	5E-9		0.0372	[0.025-0.05] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1034	chr2	58933590	58933591	rs1861410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.1		rs1861410-T	NR	2E-26		0.0203	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1034	chr2	58933590	58933591	rs1861410	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2p16.1	AC007092.1	rs1861410-C	0.444736	5E-9		0.0358017	[0.024-0.048] unit increase	Affymetrix [7288503] (imputed)	N
1034	chr2	58933590	58933591	rs1861410	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p16.1	LINC01122	rs1861410-T	0.5536	4E-10		0.0146	[0.01-0.019] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2p16.1		rs4671328-G	NR	9E-9		0.0353	[0.023-0.047] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.1	FANCL	rs4671328-T	0.448702	2E-21		0.0131699	[0.01-0.016] unit increase	Affymetrix [12370749]	N
1034	chr2	58935281	58935282	rs4671328	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs4671328-?	NR	2E-28				Affymetrix [~ 8270000] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p16.1	NR	rs4671328-T	0.4478	1E-9		0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs4671328-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.1	NA	rs4671328-T	0.4496	3E-36		0.0214	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p16.1	NA	rs4671328-T	0.4496	3E-36		0.0214	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p16.1	NR	rs4671328-T	NR	5E-18		0.024	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1034	chr2	58935281	58935282	rs4671328	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p16.1	LINC01122	rs4671328-G	0.54	2E-15		0.021	[0.015-0.027] unit decrease	Illumina [6108953] (imputed)	N
1034	chr2	58950362	58950363	rs17615494	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p16.1	LINC01122	rs17615494-T	0.2881	1E-10		0.0167	[0.012-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1034	chr2	58955952	58955953	rs2708146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	2p16.1	NR	rs2708146-A	0.817377	3E-10		0.030595	[0.021-0.04] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1034	chr2	58955952	58955953	rs2708146	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	2p16.1	LINC01122	rs2708146-A	NR	7E-9		0.0078729	[0.0052-0.0105] unit decrease	Affymetrix [18485882] (imputed)	N
1034	chr2	58955952	58955953	rs2708146	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	2p16.1	LINC01122	rs2708146-A	0.545	8E-7		1.1293023		Illumina [8265319] (imputed)	N
1034	chr2	58956556	58956557	rs13428870	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2p16.1	NR	rs13428870-G	0.1769	2E-8		0.0653	[0.043-0.088] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1034	chr2	58956556	58956557	rs13428870	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	2p16.1	LINC01122	rs13428870-T	NR	3E-11		0.0090617	[0.0064-0.0117] unit decrease	Affymetrix [18485882] (imputed)	N
1034	chr2	58957153	58957154	rs62142342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs62142342-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1034	chr2	58963235	58963236	rs12619538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p16.1		rs12619538-C	NR	5E-19		0.025	[0.02-0.03] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1034	chr2	58965210	58965211	rs1641155	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	2p16.1	FANCL	rs1641155-?	NR	1E-9				NR [5554549] (imputed)	N
1034	chr2	58965210	58965211	rs1641155	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	2p16.1	FANCL	rs1641155-?	NR	4E-17				NR [5554549] (imputed)	N
1034	chr2	58975142	58975143	rs12986742	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p16.1	NR	rs12986742-C	0.4727	6E-21		0.0353	[0.028-0.043] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1034	chr2	58975142	58975143	rs12986742	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p16.1	FANCL	rs12986742-T	0.524097	4E-8		0.0105189	[0.0068-0.0143] unit increase	Affymetrix [NR] (imputed)	N
1034	chr2	58976862	58976863	rs17049722	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	2p16.1	LINC01122	rs17049722-T	0.17	4E-12		0.038	NR unit increase	Illumina [9591901] (imputed)	N
1034	chr2	58976862	58976863	rs17049722	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	2p16.1	LINC01122	rs17049722-C	0.86	8E-8		0.009	unit increase	NR [NR]	N
1034	chr2	58976862	58976863	rs17049722	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p16.1	LINC01122	rs17049722-T	0.1391	3E-11		0.03380357	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1034	chr2	58979878	58979879	rs77732866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p16.1		rs77732866-A	NR	3E-18		0.0211	[0.016-0.026] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1034	chr2	58979878	58979879	rs77732866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p16.1	LINC01122	rs77732866-A	0.137189	1E-13		0.02373495	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1034	chr2	58979878	58979879	rs77732866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p16.1		rs77732866-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1034	chr2	58981063	58981064	rs10193538	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p16.1	BNIPL	rs10193538-T	0.6103	9E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1034	chr2	58981966	58981967	rs727857	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p16.1		rs727857-?	NR	9E-9		0.0120548	[0.0079-0.0162] unit increase	NR [6912294] (imputed)	N
1034	chr2	58981966	58981967	rs727857	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p16.1		rs727857-G	0.388511	2E-8		0.012	[0.0081-0.0159] unit increase	NR [7250403] (imputed)	N
1035	chr2	58984108	58984109	rs12613375	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p16.1	LINC01122	rs12613375-T	0.1378	2E-12		0.03615159	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1035	chr2	58984124	58984125	rs2058625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2p16.1		rs2058625-T	0.286767	5E-11		0.0198055	[0.014-0.026] unit decrease	Illumina [13479924] (imputed)	N
1035	chr2	58984124	58984125	rs2058625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2p16.1		rs2058625-T	0.286874	1E-12		0.0252789	[0.018-0.032] unit decrease	Illumina [13479178] (imputed)	N
1035	chr2	58984124	58984125	rs2058625	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs2058625-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
1035	chr2	58984869	58984870	rs10865309	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p16.1		rs10865309-C	0.863	1E-13		0.12	[0.09-0.15] % increase	Affymetrix [NR] (imputed)	N
1035	chr2	58984869	58984870	rs10865309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs10865309-T	0.147096	1E-27				Affymetrix, Illumina [24332387] (imputed)	N
1035	chr2	58984869	58984870	rs10865309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p16.1	NR	rs10865309-T	0.139647	1E-21		0.025435	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1035	chr2	58984869	58984870	rs10865309	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p16.1	LINC01122	rs10865309-T	0.1382	3E-10		0.03267414	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p16.1	LINC01122	rs62144560-A	0.137857	4E-10		0.020203905	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p16.1	LINC01122	rs62144560-A	0.137715	9E-19		0.0280858	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p16.1	LINC01122	rs62144560-A	0.137695	4E-15		0.025178889	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs62144560-A	0.145861	1E-27				Affymetrix, Illumina [24246363] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p16.1	NR	rs62144560-A	0.139567	3E-27		0.028319	[0.023-0.033] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs62144560-A	0.145658	2E-22				Affymetrix, Illumina [20825802] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p16.1	NR	rs62144560-A	0.138317	8E-22		0.026766	[0.021-0.032] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1035	chr2	58985330	58985331	rs62144560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.1		rs62144560-?	NR	6E-24				NR [~ 8900000] (imputed)	N
1035	chr2	58985374	58985375	rs76341179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	2p16.1		rs76341179-T	0.031247	2E-8		0.0757207	[0.049-0.102] unit decrease	Illumina [13469940] (imputed)	N
1035	chr2	58985374	58985375	rs76341179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	2p16.1		rs76341179-T	NR	2E-8		0.0757	[0.049-0.102] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1035	chr2	58989879	58989880	rs77217059	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	2p16.1	LINC01122	rs77217059-A	0.1302	4E-9				Illumina [5508534] (imputed)	N
1035	chr2	58997711	58997712	rs10210385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p16.1		rs10210385-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1035	chr2	58997711	58997712	rs10210385	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p16.1	FLJ30838	rs10210385-C	NR	2E-8		0.0231093	[0.015-0.031] unit increase	Affymetrix [16832071] (imputed)	N
1035	chr2	59000602	59000603	rs75786554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs75786554-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1035	chr2	59013225	59013226	rs6747219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p16.1		rs6747219-C	NR	2E-18		0.0241	[0.019-0.029] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1035	chr2	59022209	59022210	rs17616642	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs17616642-G	0.24687	2E-8	(Conditioned on chr2:59315828, chr2:60139524, chr2:59819545, chr2:60477052, chr2:60024857)	0.016557291	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1035	chr2	59036915	59036916	rs6719884	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	2p16.1	NR	rs6850606-A	0.48	3E-6		1.35	[1.19-1.53]	Illumina [274256]	N
1035	chr2	59036915	59036916	rs6719884	23055271	Gregersen PK	2012-07-16	Ann Neurol	Risk for myasthenia gravis maps to a (151) Pro->Ala change in TNIP1 and to human leukocyte antigen-B*08.	Myasthenia gravis	400 European ancestry cases, 5,505 European ancestry controls	249 European ancestry cases, 3,415 European ancestry controls	2p16.1	NR	rs6719884-A	0.40	3E-6		1.35	[1.19-1.52]	Illumina [274256]	N
1035	chr2	59039997	59039998	rs12617233	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs12617233-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1035	chr2	59042846	59042847	rs4671330	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	2p16.1	NR	rs4671330-A	0.335384	7E-10		6.17	z score increase	NR [10847151] (imputed)	N
1035	chr2	59072968	59072969	rs17552189	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	2p16.1	intergenic	rs17552189-?	NR	4E-6		1.4	[1.21-1.61]	Illumina [948142]	N
1035	chr2	59112166	59112167	rs114778000	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs114778000-?	NR	1E-9	(Ep-CAM)	1.20141	[0.81-1.59] unit increase	Illumina [11901634] (imputed)	N
1036	chr2	59133512	59133513	rs1861100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs1861100-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1036	chr2	59139506	59139507	rs17049820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs17049820-T	0.884	5E-9	(MTAG)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1036	chr2	59139506	59139507	rs17049820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs17049820-T	0.8856	6E-9	(MTAG)	0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1036	chr2	59139506	59139507	rs17049820	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	LINC01122	rs17049820-T	NR	5E-8		0.025509462	[0.016-0.035] unit decrease	Affymetrix [NR]	N
1036	chr2	59140865	59140866	rs10175478	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.1	NR	rs10175478-?	NR	3E-8				Affymetrix [NR]	N
1036	chr2	59145721	59145722	rs67593591	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs67593591-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1036	chr2	59153016	59153017	rs3732140	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs3732140-?	NR	8E-6		4.468	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1036	chr2	59153053	59153054	rs78226650	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs78226650-A	NR	8E-6		1.13	[NR]	Illumina [7158791] (imputed)	N
1036	chr2	59155104	59155105	rs7573672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs7573672-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1036	chr2	59185111	59185112	rs13002470	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs13002470-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1036	chr2	59202028	59202029	rs111835151	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p16.1	NR	rs111835151-C	0.043	2E-6		0.288	[0.17-0.41] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1037	chr2	59260403	59260404	rs7590342	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs7590342-?	NR	2E-7		5.237	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1037	chr2	59276715	59276716	rs12052206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.1		rs12052206-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1037	chr2	59282590	59282591	rs991964	21460842	Cha PC	2011-04-03	Nat Genet	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	2p16.1	NR	rs991964-A	0.34	9E-6		1.15	[1.03-1.28]	Illumina [457044]	N
1037	chr2	59290758	59290759	rs10490103	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	VRK2	rs10490103-?	NR	3E-6	(CE 22:6)	0.325153	[0.19-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2p16.1		rs10172678-T	0.4	3E-11		0.012	mmol/L increase	NR [NR] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p16.1		rs10172678-T	0.4	4E-17				NR [NR] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2p16.1		rs10172678-T	0.4	5E-6		0.008	mmol/L decrease	NR [NR] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p16.1		rs10172678-T	0.4	1E-20		0.014	% increase	NR [NR] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	2p16.1		rs10172678-T	0.4	6E-8		0.011	U/L increase	NR [NR] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs10172678-?	NR	4E-24				Affymetrix [~ 8270000] (imputed)	N
1037	chr2	59294557	59294558	rs10172678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs10172678-?	NR	9E-25				NR [~ 8900000] (imputed)	N
1037	chr2	59295475	59295476	rs67174662	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	2p16.1	EIF3FP3	rs67174662-A	0.02	6E-7		1.02	[1.01-1.03]	Affymetrix [7745390] (imputed)	N
1037	chr2	59298297	59298298	rs13416992	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p16.1	NR	rs13416992-A	0.397097	3E-9		0.0126311	[0.0085-0.0168] unit increase	NR [NR]	N
1037	chr2	59300641	59300642	rs74709559	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p16.1	FLJ30838, Mir_548	rs74709559-G	0.01	1E-7	(African American)	1.67	[1.06-2.28] unit increase	Illumina [up to 13042663] (imputed)	N
1037	chr2	59301571	59301572	rs17049905	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p16.1	FANCL	rs17049905-A	0.8948	5E-10		0.020396128	[0.014-0.027] unit decrease	Affymetrix [11514654] (imputed)	N
1037	chr2	59301916	59301917	rs13027140	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	2p16.1	FLJ30838, LOC101927285	rs13027140-?		1E-6		1.7	[1.38-2.11]	Illumina [341191]	N
1037	chr2	59302876	59302877	rs887912	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2p16.1	NR	rs887912-T	0.2957	6E-13		0.0134	[0.0097-0.0171] unit increase	NR [~ 27400000] (imputed)	N
1037	chr2	59302876	59302877	rs887912	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p16.1	NA	rs887912-T	0.2963	2E-30		0.0204	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
1037	chr2	59302876	59302877	rs887912	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p16.1	NR	rs887912-T	NR	1E-13		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1037	chr2	59302876	59302877	rs887912	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FLJ30838	rs887912-T	0.2828	5E-6	(EA,women)	0.0235	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1037	chr2	59302876	59302877	rs887912	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FLJ30838	rs887912-T	0.2828	2E-8	(EA)	0.0222	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1037	chr2	59302876	59302877	rs887912	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p16.1	FANCL	rs887912-T	0.28	6E-9	(Obesity class II)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1037	chr2	59302876	59302877	rs887912	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	2p16.1	FANCL	rs887912-T	0.28	1E-10	(Obesity class I)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1037	chr2	59302876	59302877	rs887912	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2p16.1	FANCL	rs887912-T	0.29	2E-12		0.1	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.1	NA	rs1016287-T	0.3035	9E-32		0.0208	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	6E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	4E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	4E-6	(women)	0.0244	[0.014-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	3E-6		0.0191	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	8E-8		0.0196	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p16.1	CIB4	rs1016287-T	0.2819	2E-6	(women)	0.0223	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p16.1	NR	rs1016287-T	0.284383102194891	4E-13		0.021626975	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1037	chr2	59305624	59305625	rs1016287	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs1016287-T	0.288	4E-6	(EA, men)	0.02	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1037	chr2	59305624	59305625	rs1016287	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs1016287-T	0.287	2E-11	(EA)	0.023	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1037	chr2	59305624	59305625	rs1016287	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs1016287-T	0.285	6E-9	(EA, women)	0.025	[0.017-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1037	chr2	59305624	59305625	rs1016287	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs1016287-T	0.285	4E-12		0.023	[0.016-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1037	chr2	59306563	59306564	rs11125768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p16.1		rs11125768-C	NR	3E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1037	chr2	59306563	59306564	rs11125768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p16.1		rs11125768-C	NR	4E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p16.1	NR	rs6545714-?	NR	3E-11		0.14328	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p16.1	NR	rs6545714-?	NR	2E-8	(male)	0.14879	[0.097-0.201] unit decrease	Affymetrix [7794483] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p16.1	BNIPL	rs6545714-G	0.392	9E-9		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.1	NA	rs6545714-A	0.6107	9E-16		0.0139	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.1	NA	rs6545714-A	0.6112	4E-32		0.0194	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FLJ30838	rs6545714-A	0.6092	9E-7	(EA, men)	0.0235	[0.014-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FLJ30838	rs6545714-A	0.6092	7E-6	(EA, women)	0.02	[0.011-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1037	chr2	59307724	59307725	rs6545714	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p16.1	FLJ30838	rs6545714-A	0.6092	2E-10	(EA)	0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1037	chr2	59311535	59311536	rs980183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p16.1		rs980183-A	NR	1E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1037	chr2	59311535	59311536	rs980183	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p16.1	NR	rs980183-G	0.3942	1E-14		0.0363	[0.027-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1037	chr2	59313973	59313974	rs7424120	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.1	FANCL	rs7424120-C	0.398085	4E-24		0.0142008	[0.011-0.017] unit increase	Affymetrix [12370749]	N
1037	chr2	59313973	59313974	rs7424120	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p16.1	FANCL	rs7424120-C	0.398276	6E-9		0.0118514	[0.0079-0.0158] unit increase	Affymetrix [NR] (imputed)	N
1037	chr2	59315827	59315828	rs6730325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p16.1		rs6730325-A	NR	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1037	chr2	59315827	59315828	rs6730325	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p16.1	LINC01122	rs6730325-A	0.6668	3E-8		0.0189	[0.012-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1037	chr2	59315827	59315828	rs6730325	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p16.1	NR	rs6730325-A	0.6659	6E-7	(women)	0.0244	[0.015-0.034] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1037	chr2	59315827	59315828	rs6730325	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs6730325-A	0.609782	2E-8	(Conditioned on chr2:60139524, chr2:59819545, chr2:60477052, chr2:60024857)	0.014635834	[0.0095-0.0198] unit decrease	NR [~ 10000000] (imputed)	N
1037	chr2	59315827	59315828	rs6730325	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	intergenic	rs6730325-G	0.638	7E-10		0.1599	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
1037	chr2	59321224	59321225	rs12472381	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p16.1	LINC01122	rs12472381-A	0.39	2E-8		0.021931	[0.014-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.286	1E-7	(EA)	0.0279	[0.018-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.2822	8E-7	(women)	0.0318	[0.019-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.2821	3E-8		0.0289	[0.019-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-?	NR	9E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-?	NR	9E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-?	NR	8E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-?	NR	5E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.286	2E-8	(EA, women)	0.0339	[0.022-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.286	1E-9	(EA)	0.0295	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.2821	6E-10		0.0291	[0.02-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59329152	59329153	rs759250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p16.1	LOC730134, FLJ30838	rs759250-A	0.2821	5E-9	(women)	0.0348	[0.023-0.047] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1037	chr2	59330226	59330227	rs6739755	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p16.1	NR	rs6739755-A	0.3964	4E-19		0.022714138	[0.018-0.028] unit increase	Affymetrix [10549349] (imputed)	N
1037	chr2	59335103	59335104	rs7575523	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	2p16.1	LINC01122	rs7575523-T	0.397499	1E-13		0.235994	[0.17-0.3] unit increase	Affymetrix [9463307] (imputed)	N
1037	chr2	59335103	59335104	rs7575523	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	2p16.1	LINC01122	rs7575523-T	0.397499	2E-7		0.25498	[0.16-0.35] unit increase	Affymetrix [9463307] (imputed)	N
1037	chr2	59335103	59335104	rs7575523	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	2p16.1	LINC01122	rs7575523-T	0.397499	1E-6		0.00447821	[0.0027-0.0063] unit decrease	Affymetrix [9463307] (imputed)	N
1037	chr2	59335103	59335104	rs7575523	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p16.1	FLJ30838, MIR4432	rs7575523-T		5E-8		0.142	unit increase	Affymetrix [at least 2696785] (imputed)	N
1037	chr2	59339986	59339987	rs17049926	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p16.1	NR	rs17049926-?	NR	1E-12				Affymetrix [NR]	N
1037	chr2	59355020	59355021	rs77803072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs77803072-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1037	chr2	59373571	59373572	rs13023898	34592243	Nusinovici S	2021-09-27	Ophthalmology	High-density lipoprotein 3 cholesterol and primary open-angle glaucoma: metabolomics and mendelian randomization analyses.	High-density lipoprotein 3 cholesterol levels	2,308 Chinese ancestry individuals, 2,528 Indian ancestry individuals, 2,521 Malays ancestry individuals, 10,984 Finnish ancestry individuals	NA	2p16.1		rs13023898-A	NR	3E-6		0.084	unit increase	Illumina [NR] (imputed)	N
1038	chr2	59386937	59386938	rs192655202	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs192655202-?	NR	9E-12	(Ep-CAM)	1.63866	[1.17-2.11] unit increase	Illumina [11901634] (imputed)	N
1038	chr2	59429806	59429807	rs10175975	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.1		rs10175975-T	0.179	2E-10		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1038	chr2	59429806	59429807	rs10175975	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p16.1	NR	rs10175975-T	0.179	3E-9		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1038	chr2	59429806	59429807	rs10175975	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.1	FANCL	rs10175975-T	0.1853	1E-9		1.0255202		Affymetrix [11880941] (imputed)	N
1038	chr2	59429806	59429807	rs10175975	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with multiple cognitive domain impairments	Up to 248 European ancestry cases, 3,447 European ancestry controls	NA	2p16.1	NR	rs10175975-T	0.19	3E-6		1.99	[1.7-2.28]	NR [up to 6398204] (imputed)	N
1038	chr2	59435618	59435619	rs11691214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p16.1		rs11691214-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1038	chr2	59439972	59439973	rs116112221	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	up to 23,021 European, East Asian ancestry female cases, up to 296,016 European, East Asian ancestry female controls	NA	2p16.1		rs116112221-T	0.0061	5E-10		1.95	[1.58-2.41]	Affymetrix, Illumina [NR] (imputed)	N
1038	chr2	59446815	59446816	rs13417746	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	2p16.1	NR	rs13417746-A	0.4	4E-6	(Unifrac metric)	4.483534	NR z-score increase	Illumina [5293637] (imputed)	N
1038	chr2	59462526	59462527	rs17050016	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	VRK2	rs17050016-?	NR	5E-6	(CE 22:6)	0.38066494	[0.22-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1038	chr2	59475999	59476000	rs2215893	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs2215893-T	0.3356	3E-16	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1038	chr2	59475999	59476000	rs2215893	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs2215893-T	0.3356	4E-17		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1038	chr2	59478516	59478517	rs11125776	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2p16.1	LINC01793	rs11125776-T		1E-10		0.0079	[0.0055-0.0103] unit increase	Affymetrix [13304133] (imputed)	N
1038	chr2	59499346	59499347	rs10490113	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	2p16.1	intergenic	rs10490113-?	NR	5E-6				Affymetrix [70897]	N
1038	chr2	59501864	59501865	rs72806266	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	2p16.1	ENSG00000233891	rs72806266-?	NR	7E-6				Affymetrix, Illumina [15642250] (imputed)	N
1038	chr2	59505611	59505612	rs1861148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs1861148-T	0.6579	2E-11	(MTAG)	0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr2	59521043	59521044	rs1861145	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs1861145-A	0.6118	2E-10	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1039	chr2	59522794	59522795	rs6727119	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.1		rs6727119-G	0.44	3E-10		6.3	z score increase	Affymetrix [9061022] (imputed)	N
1039	chr2	59538090	59538091	rs11689998	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs11689998-?	NR	8E-8		5.371	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1039	chr2	59543375	59543376	rs181048070	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	2p16.1	LOC101927285	rs181048070-A	0.02	1E-6		2.0	[1.73-2.27]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1039	chr2	59553737	59553738	rs36164224	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.1		rs36164224-A	0.42	4E-14		7.56	z score increase	Affymetrix [9061022] (imputed)	N
1039	chr2	59553737	59553738	rs36164224	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.1	NR	rs36164224-A	0.4419	5E-13				NR [9056863] (imputed)	N
1039	chr2	59554589	59554590	rs76918166	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs76918166-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1039	chr2	59592690	59592691	rs75841521	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p16.1		rs75841521-A	0.02802	5E-8		0.442	[0.28-0.6] unit decrease	Illumina [17926605] (imputed)	N
1039	chr2	59605010	59605011	rs6718569	31089300	Matoba N	2019-03-25	Nat Hum Behav	GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture.	Age of smoking initiation	7,379 Japanese ancestry females	NA	2p16.1	LINC01793, MIR4432HG	rs6718569-C	0.114	4E-9		0.161	[0.11-0.21] unit decrease	Illumina [6108828] (imputed)	N
1039	chr2	59608813	59608814	rs78594335	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs78594335-A	0.0665	9E-7		0.0107578	[0.0065-0.015] unit decrease	NR [9732723] (imputed)	N
1040	chr2	59651583	59651584	rs6749972	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs6749972-T	0.491	2E-8		0.00603552	[0.0039-0.0081] unit decrease	NR [9732723] (imputed)	N
1040	chr2	59706700	59706701	rs188475040	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs188475040-?	NR	1E-12	(Ep-CAM)	1.7425	[1.26-2.23] unit increase	Illumina [11901634] (imputed)	N
1040	chr2	59708648	59708649	rs199869387	29975729	Kim TH	2018-07-05	PLoS One	Identification of novel susceptibility loci associated with hepatitis B surface antigen seroclearance in chronic hepatitis B.	Hepatitis B surface antigen seroclearance in chronic hepatitis B infection	100 Korean ancestry cases, 100 Korean ancestry controls	NA	2p16.1	intergenic	rs199869387-A	0.35	8E-6		2.97	[1.84-4.79]	Illumina [1365088]	N
1040	chr2	59745642	59745643	rs2041720	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	PAPOLG	rs2041720-?	NR	9E-6	(LPE 18:1)	0.16425972	[0.092-0.237] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1040	chr2	59747173	59747174	rs7595876	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs7595876-?	NR	3E-6		4.705	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1040	chr2	59751375	59751376	rs2215908	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p16.1	PAPOLG	rs2215908-?	NR	2E-6	(LPC 20:4)	0.17345272	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1040	chr2	59759138	59759139	rs767012	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs767012-C	0.176	2E-8		0.008	[0.0041-0.0119] unit increase	NR [NR] (imputed)	N
1040	chr2	59762370	59762371	rs2540089	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	2p16.1		rs2540089-?	NR	4E-10				NR [9705931] (imputed)	N
1041	chr2	59770352	59770353	rs2674052	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.1	NR	rs2674052-G	0.3232	2E-9				NR [9056863] (imputed)	N
1041	chr2	59789704	59789705	rs10203166	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p16.1	NR	rs10203166-C	0.974135912544803	4E-6	(IGP5)	0.7988	[0.46-1.14] unit increase	Illumina [~ 2500000] (imputed)	N
1041	chr2	59790351	59790352	rs1035101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p16.1		rs1035101-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1041	chr2	59793494	59793495	rs2674078	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p16.1	LOC101927285, MIR4432	rs2674078-?	NR	9E-9		0.020867985	[0.014-0.028] unit decrease	Illumina [27896057] (imputed)	N
1041	chr2	59819544	59819545	rs2539706	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs2539706-A	0.53	1E-11		0.00731463	[0.0052-0.0094] unit increase	NR [9732723] (imputed)	N
1041	chr2	59819544	59819545	rs2539706	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs2539706-A	0.529947	2E-10	(Conditioned on chr2:60477052, chr2:60024857)	0.01624544	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1041	chr2	59832638	59832639	rs2251081	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	NR	rs2251081-?	NR	6E-6		0.0078461	[0.0044-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
1041	chr2	59833167	59833168	rs2192338	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	LOC647038/BCL11A	rs2192338-C	0.779652	1E-7		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1041	chr2	59833167	59833168	rs2192338	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p16.1	LOC647038/BCL11A	rs2192338-C	0.779652	4E-9		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
1041	chr2	59839011	59839012	rs1118655	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p16.1	intergenic	rs1118655-?	NR	4E-8		0.0136037	[0.0087-0.0185] unit increase	Affymetrix [25921788] (imputed)	N
1041	chr2	59841987	59841988	rs2539692	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p16.1	BCL11A	rs2539692-T	0.391021	2E-8		0.00807277	[0.0053-0.0109] unit increase	Affymetrix [12370749]	N
1041	chr2	59856712	59856713	rs2539679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p16.1		rs2539679-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1041	chr2	59879266	59879267	rs2539671	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	2p16.1	BCL11A	rs2539671-?	NR	1E-6				Affymetrix [~ 7800000] (imputed)	N
1041	chr2	59880604	59880605	rs185581	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p16.1	NA	rs185581-A	0.2052	8E-10		0.0133	[0.009-0.0176] unit increase	NR [~ 27400000] (imputed)	N
1041	chr2	59881044	59881045	rs268067	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2p16.1	BCL11A	rs268067-A	0.8	3E-8		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1041	chr2	59884497	59884498	rs6746340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs6746340-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1041	chr2	59884497	59884498	rs6746340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs6746340-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1041	chr2	59890341	59890342	rs268073	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p16.1	FLJ30838	rs268073-C	0.201	5E-6	(EA, women)	0.027	[0.015-0.039] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1041	chr2	59890667	59890667	rs201644532	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	2p16.1	NR	rs201644532-?	NR	7E-7		0.4692	[0.29-0.65] unit increase	Illumina [at least 560000] (imputed)	N
1042	chr2	59913831	59913832	rs114844598	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2p16.1		rs114844598-?	NR	1E-6		1.206434	[1.11846439954367-1.30132252574391]	Illumina [7827597] (imputed)	N
1042	chr2	59941865	59941866	rs155563	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs155563-?		4E-9				NR [7428630] (imputed)	N
1042	chr2	59941978	59941979	rs197084	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	2p16.1	NR	rs197084-A	0.577	3E-8	(females)	0.442	[0.29-0.6] bpm increase	Affymetrix [~ 7800000] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2p16.1		rs13028903-?	NR	2E-14				NR [7857346] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p16.1	NR	rs13028903-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p16.1		rs13028903-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p16.1	NR	rs13028903-T	0.47	1E-8		0.011	[0.0075-0.0145] unit increase	Affymetrix [2446094] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p16.1	NR	rs13028903-T	0.47	5E-8				Affymetrix [2446094] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.1	NA	rs13028903-T	0.4597	3E-10		0.0113	[0.0078-0.0148] unit increase	NR [~ 27400000] (imputed)	N
1042	chr2	59951464	59951465	rs13028903	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271955, ENSG00000233891	rs13028903-?	NR	2E-14		0.013329	[0.0099-0.0167] unit increase	Affymetrix [805426] (imputed)	N
1042	chr2	59952258	59952259	rs7598185	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs7598185-C	0.684	4E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1042	chr2	59952651	59952652	rs1442877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs1442877-G	0.5976	3E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1042	chr2	59952845	59952846	rs6545747	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p16.1	NR	rs6545747-A	0.481	9E-7	(additive, male)	0.66497886	[0.565251790615385-0.782300766882105]	Affymetrix, Illumina [6131010] (imputed)	N
1042	chr2	59952845	59952846	rs6545747	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2p16.1		rs6545747-?	NR	6E-6	(MLM)	0.1756764	[0.1-0.251] unit increase	Illumina [~ 9000000] (imputed)	N
1042	chr2	59953474	59953475	rs17050389	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2p16.1	NR	rs17050389-C		5E-8		0.1	[0.061-0.139] unit increase	NR [NR]	N
1042	chr2	59970659	59970660	rs1442883	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271955	rs1442883-?	NR	2E-10		0.011064	[0.0077-0.0145] unit increase	Affymetrix [805426] (imputed)	N
1042	chr2	59983903	59983904	rs10168190	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271955	rs10168190-?	NR	2E-9		0.010523	[0.0071-0.0139] unit increase	Affymetrix [805426] (imputed)	N
1042	chr2	59988257	59988258	rs12474507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	ENSG00000271955	rs12474507-?	NR	6E-11		0.011352	[0.0079-0.0148] unit increase	Affymetrix [805426] (imputed)	N
1042	chr2	60000303	60000304	rs1899492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.1		rs1899492-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1042	chr2	60000303	60000304	rs1899492	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (40 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs1899492-C	0.528498	2E-11		0.0396215	[0.028-0.051] unit decrease	Affymetrix [509255] (imputed)	N
1042	chr2	60006665	60006666	rs12713403	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs12713403-C	0.374946	7E-11		0.0395223	[0.028-0.051] unit decrease	Affymetrix [509255] (imputed)	N
1042	chr2	60006704	60006705	rs12713404	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	2p16.1	BCL11A	rs12713404-G	0.384874	8E-6		0.280097	[0.16-0.4] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1042	chr2	60006704	60006705	rs12713404	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2p16.1	BCL11A	rs12713404-T	0.38	9E-9		0.1992	[0.13-0.27] unit decrease	Affymetrix [19941912] (imputed)	N
1042	chr2	60008265	60008266	rs13022107	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs13022107-C	0.531078	2E-9		0.0351358	[0.024-0.047] unit decrease	Affymetrix [509255] (imputed)	N
1042	chr2	60008265	60008266	rs13022107	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs13022107-C	0.530942	1E-9		0.0368806	[0.025-0.048] unit decrease	Affymetrix [509255] (imputed)	N
1042	chr2	60014758	60014759	rs6732097	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.1		rs6732097-T	0.43	4E-9		5.87	z score increase	Affymetrix [9061022] (imputed)	N
1042	chr2	60014758	60014759	rs6732097	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.1	BCL11A	rs6732097-T	0.466	6E-14		0.0089	[0.0065-0.0113] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1042	chr2	60024856	60024857	rs7585579	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2p16.1	BCL11A	rs7585579-G	0.489	6E-12		0.0157	[0.011-0.02] unit increase	Illumina [~ 250000] (imputed)	N
1042	chr2	60024856	60024857	rs7585579	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p16.1	BCL11A	rs7585579-C	0.5061	3E-12		0.013979038	[0.01-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
1042	chr2	60024856	60024857	rs7585579	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p16.1	BCL11A	rs7585579-C	0.5087	3E-8		0.014212011	[0.0092-0.0193] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1042	chr2	60024856	60024857	rs7585579	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs7585579-G	0.499	5E-15		0.020396171	[0.015-0.026] unit increase	NR [~ 10000000] (imputed)	N
1042	chr2	60025962	60025963	rs1372876	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	2p16.1	BCL11A	rs1372876-A	0.414	3E-9		0.326	[0.22-0.43] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1042	chr2	60026905	60026906	rs1442875	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs1442875-T	0.388234	2E-9		0.0361926	[0.024-0.048] unit decrease	Affymetrix [509255] (imputed)	N
1042	chr2	60030510	60030511	rs4672317	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate increase in response to exercise	5,4137 European ancestry individuals, 1,744 Asian ancestry individuals, 1,445 African ancestry individuals, 468 admixed individuals, 1,024 individuals	NA	2p16.1	intergenic	rs4672317-T	0.352225	3E-10		0.038391	[0.026-0.05] unit decrease	Affymetrix [509255] (imputed)	N
1043	chr2	60063762	60063763	rs66723505	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	intergenic	rs66723505-A	0.692	1E-13		0.2131	[0.16-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
1043	chr2	60063860	60063861	rs66617540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2p16.1	NR	rs66617540-T	NR	3E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1043	chr2	60066404	60066405	rs11888201	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p16.1	NR	rs11888201-C	0.541623	3E-8		0.00701206	[0.0045-0.0095] unit increase	Affymetrix [16578495] (imputed)	N
1043	chr2	60068577	60068578	rs6742041	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p16.1	intergenic	rs6742041-A	0.693	2E-8		0.1167	[0.076-0.157] mmHg increase	Affymetrix [NR] (imputed)	N
1043	chr2	60085844	60085845	rs62143603	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p16.1	NR	rs62143603-?	NR	2E-6		0.0081377	[0.0048-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1043	chr2	60087921	60087922	rs12465185	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	2p16.1	NR	rs12465185-G	0.06992	4E-7		0.3052	[0.19-0.42] unit decrease	Illumina [10677593] (imputed)	N
1043	chr2	60096559	60096560	rs72816333	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p16.1	RP11-444A22.1	rs72816333-A	0.8282	6E-12		0.2225	[0.16-0.29] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1043	chr2	60100832	60100833	rs61454271	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs61454271-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1043	chr2	60111221	60111222	rs12991146	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children (6+ vs. 0 or 1)	1,686 Bangladeshi women	NA	2p16.1	NR	rs12991146-?		9E-6		0.26	unit increase	Illumina [1211988] (imputed)	N
1043	chr2	60117114	60117115	rs73932448	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		MIR4432HG	rs73932448-A	0.04	9E-6				Illumina [1679420] (imputed)	N
1043	chr2	60119743	60119744	rs6545765	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs6545765-C	0.601	8E-14		0.00821812	[0.0061-0.0104] unit increase	NR [9732723] (imputed)	N
1043	chr2	60122045	60122046	rs11693885	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2p16.1	RP11-444A22.1	rs11693885-G	0.55	6E-6		0.76	[0.43-1.09] g/day increase	Affymetrix [10353649] (imputed)	N
1043	chr2	60122045	60122046	rs11693885	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p16.1	NR	rs11693885-A	0.45	4E-10		0.0137482	[0.0094-0.0181] unit increase	NR [9732723] (imputed)	N
1043	chr2	60122045	60122046	rs11693885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs11693885-A	0.4522	1E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1043	chr2	60122045	60122046	rs11693885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs11693885-A	0.4522	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1043	chr2	60126310	60126311	rs145433814	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	2p16.1	intergenic	rs145433814-G	0.976	6E-6		0.239	[0.14-0.34] unit decrease	Illumina [6150213] (imputed)	N
1043	chr2	60133157	60133158	rs1344293	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs1344293-G	0.477	2E-22		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
1043	chr2	60133157	60133158	rs1344293	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.1	BCL11A	rs1344293-T	0.524	8E-17		0.0098	[0.0074-0.0122] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1043	chr2	60133157	60133158	rs1344293	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	2p16.1	MIR4432	rs1344293-G	0.480648	3E-15		0.0303143	[0.023-0.038] unit increase	Affymetrix [641018] (imputed)	N
1043	chr2	60136175	60136176	rs4671357	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p16.1		rs4671357-T	0.519	1E-11		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1043	chr2	60136175	60136176	rs4671357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.1		rs4671357-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1043	chr2	60139523	60139524	rs1863161	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p16.1	BCL11A	rs1863161-A	0.5585	2E-9		0.012076135	[0.0081-0.016] unit increase	Affymetrix [11514654] (imputed)	N
1043	chr2	60139523	60139524	rs1863161	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs1863161-A	0.56094	2E-9	(Conditioned on chr2:59819545, chr2:60477052, chr2:60024857)	0.015339372	[0.01-0.02] unit increase	NR [~ 10000000] (imputed)	N
1043	chr2	60143191	60143192	rs7595950	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs7595950-T	0.4962	2E-11	(conditional-joint)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1043	chr2	60143191	60143192	rs7595950	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2p16.1	intergenic	rs7595950-C	0.388	3E-6	(EA)	0.521	unit increase	Illumina [at least 5086170] (imputed)	N
1043	chr2	60147166	60147167	rs2113798	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2p16.1	NA	rs2113798-T		3E-12		0.0129232	[0.0093-0.0166] unit increase	Illumina [13288253] (imputed)	N
1043	chr2	60148939	60148940	rs12466227	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p16.1	RP11-444A22.1	rs12466227-G	0.4457	7E-9		0.011756949	[0.0078-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1043	chr2	60148939	60148940	rs12466227	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs12466227-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1043	chr2	60157096	60157097	rs13005495	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2p16.1	BCL11A	rs13005495-T	NR	1E-8		0.00723252	[0.0047-0.0097] unit increase	Affymetrix [10061374] (imputed)	N
1044	chr2	60163126	60163127	rs10490064	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p16.1	BCL11A	rs10490064-A	0.3935	9E-11		0.015692726	[0.011-0.02] unit decrease	Affymetrix [11515109] (imputed)	N
1044	chr2	60163126	60163127	rs10490064	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p16.1	NR	rs10490064-G	0.616	6E-14		0.0112516	[0.0083-0.0142] unit decrease	NR [9732723] (imputed)	N
1044	chr2	60166831	60166832	rs6719762	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.1	intergenic	rs6719762-T	0.525707	7E-27		0.0220572	[0.018-0.026] unit increase	NR [16516521] (imputed)	N
1044	chr2	60167526	60167527	rs12621229	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p16.1	BCL11A	rs12621229-A	0.3729	2E-8		0.014849665	[0.0096-0.0201] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1044	chr2	60170874	60170875	rs2419407	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.1	NA	rs2419407-T	0.5648	4E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1044	chr2	60175474	60175475	rs1025128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	2p16.1		rs1025128-C	NR	6E-9		0.0653	[0.043-0.087] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
1044	chr2	60175474	60175475	rs1025128	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	2p16.1	Intergenic	rs1025128-C	0.563	3E-9		1.08	[1.05-1.11]	Affymetrix [84000000] (imputed)	N
1044	chr2	60178341	60178342	rs890067	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p16.1	intergenic	rs890067-?	NR	4E-8		0.0136902	[0.0088-0.0186] unit increase	Affymetrix [25921788] (imputed)	N
1044	chr2	60181117	60181118	rs73932466	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Thermococci abundance in stool	5,959 Finnish ancestry individuals	NA	2p16.1		rs73932466-T	0.123047	1E-8		0.0345972	[0.023-0.046] unit increase	Illumina [7980478] (imputed)	N
1044	chr2	60181117	60181118	rs73932466	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Thermococcaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2p16.1		rs73932466-T	0.123047	1E-8		0.0421152	[0.028-0.057] unit increase	Illumina [7980478] (imputed)	N
1044	chr2	60182070	60182071	rs7556782	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p16.1	NR	rs7556782-C	0.643	3E-8		0.00890944	[0.0058-0.012] unit increase	NR [9732723] (imputed)	N
1044	chr2	60182817	60182818	rs12466950	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p16.1	NR	rs12466950-A	0.210250209183741	5E-9		0.008548771	[0.0057-0.0114] unit increase	NR [NR]	N
1044	chr2	60203916	60203917	rs12476772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs12476772-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1044	chr2	60203916	60203917	rs12476772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs12476772-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1044	chr2	60217456	60217457	rs4672338	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p16.1	BCL11A	rs4672338-C	0.663755	8E-9		0.008354	[0.0055-0.0112] unit decrease	Affymetrix [12370749]	N
1044	chr2	60227045	60227046	rs116210206	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	2p16.1	LOC101927285, MIR4432	rs116210206-?	NR	8E-9		0.3456638	[0.23-0.46] unit decrease	Illumina [28840767] (imputed)	N
1044	chr2	60227045	60227046	rs116210206	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	2p16.1	LOC101927285, MIR4432	rs116210206-?	NR	3E-6	(AA)	0.3261789	[0.19-0.46] unit decrease	Illumina [28840767] (imputed)	N
1044	chr2	60247136	60247137	rs13018210	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs13018210-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1044	chr2	60255975	60255976	rs13395777	30265060	MacKillop J	2018-09-27	Exp Clin Psychopharmacol	Genetic influences on delayed reward discounting: A genome-wide prioritized subset approach.	Delayed reward discounting	986 European ancestry individuals	NA	2p16.1	NR	rs13395777-T	0.332	3E-8		0.267025	[0.17-0.36] unit increase	Illumina [4883968] (imputed)	N
1044	chr2	60281607	60281608	rs6712720	21493818	Shaw SY	2011-04-21	Circ Cardiovasc Genet	Genetic and clinical correlates of early-outgrowth colony-forming units.	Monocyte early outgrowth colony forming units	1,654 European ancestry individuals	NA	2p16.1	BCL11A	rs6712720-C	0.49	4E-6		0.16	[0.08-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1044	chr2	60284613	60284614	rs1861151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p16.1		rs1861151-T	NR	7E-10		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1044	chr2	60284613	60284614	rs1861151	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs1861151-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1044	chr2	60285449	60285450	rs13002767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p16.1		rs13002767-A	NR	4E-9		0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1045	chr2	60293215	60293216	rs75022676	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p16.1	AC007132.1	rs75022676-A	0.2079	3E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1045	chr2	60297575	60297576	rs75324100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs75324100-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1045	chr2	60333029	60333030	rs974135	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	2p16.1	BCL11A	rs974135-T	0.33	9E-7		1.02	[1.01-1.03]	Affymetrix [7745390] (imputed)	N
1045	chr2	60398415	60398416	rs4672367	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	2p16.1	Intergenic	rs4672367-?		1E-6		2.471088	[NR] unit decrease	Illumina [575353]	N
1045	chr2	60403017	60403018	rs6545786	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	527 Japanese ancestry men	NA	2p16.1	intergenic	rs6545786-T	0.23	6E-8		2.02	[1.29-2.75] unit increase	Illumina [544877]	N
1045	chr2	60403017	60403018	rs6545786	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	2p16.1	intergenic	rs6545786-T	0.23	7E-6		1.11	[0.62-1.6] unit increase	Illumina [6380737] (imputed)	N
1046	chr2	60459805	60459806	rs359268	23646285	Khor SS	2013-04-16	PeerJ	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		2p16.1	BCL11A	rs359268-C	0.431	1E-6	(recessive)	2.81	[1.84-4.30]	Affymetrix [508366] (imputed)	N
1046	chr2	60468593	60468594	rs7585803	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2p16.1	NR	rs7585803-C	0.8387	5E-7		1.0111	[0.62-1.41] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1046	chr2	60470925	60470926	rs359233	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs359233-A	0.3754	3E-8	(MTAG)	0.0075	[0.0048-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1046	chr2	60471408	60471409	rs359234	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs359234-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1046	chr2	60473093	60473094	rs359237	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p16.1		rs359237-T	0.4678	9E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1046	chr2	60475508	60475509	rs359243	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.1	MIR4432HG	rs359243-T	0.39251	1E-23		0.0212518	[0.017-0.025] unit increase	NR [16516521] (imputed)	N
1046	chr2	60475508	60475509	rs359243	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2p16.1		rs359243-T	0.393	1E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1046	chr2	60475508	60475509	rs359243	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.1	BCL11A	rs359243-T	0.394	8E-11		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1046	chr2	60477051	60477052	rs359247	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p16.1	NR	rs359247-T	0.639	1E-21		0.0106962	[0.0085-0.0129] unit increase	NR [9732723] (imputed)	N
1046	chr2	60477051	60477052	rs359247	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p16.1	NR	rs359247-T	0.638652	1E-16	(Conditioned on chr2:60024857)	0.022030441	[0.017-0.027] unit increase	NR [~ 10000000] (imputed)	N
1046	chr2	60477051	60477052	rs359247	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p16.1	NR	rs359247-T	0.643	6E-16		0.0122891	[0.0093-0.0153] unit decrease	NR [9732723] (imputed)	N
1046	chr2	60477460	60477461	rs359248	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p16.1	BCL11A	rs359248-G	0.5436000000000001	2E-16		1.0270104		Affymetrix [11880941] (imputed)	N
1046	chr2	60477460	60477461	rs359248	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p16.1	BCL11A	rs359248-G	0.5436000000000001	2E-16		1.0278816		Affymetrix [11880941] (imputed)	N
1046	chr2	60477787	60477787	rs145678577	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2p16.1	MIR4432HG	rs145678577-A	0.3676	2E-11		0.0682	[0.048-0.088] unit increase	NR [9744772] (imputed)	N
1046	chr2	60481643	60481644	rs359252	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p16.1	NR	rs359252-C	0.617	4E-9		0.00928041	[0.0062-0.0124] unit increase	NR [9732723] (imputed)	N
1046	chr2	60481955	60481956	rs359253	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p16.1	NR	rs359253-A	0.638	1E-9		0.013783	[0.0094-0.0182] unit increase	NR [9732723] (imputed)	N
1046	chr2	60484908	60484909	rs6545794	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	2p16.1	MIR4432, LOC101927285	rs6545794-A	0.08	3E-6		0.33	unit decrease	Illumina [5600000] (imputed)	N
1046	chr2	60486935	60486936	rs359260	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p16.1	BCL11A	rs359260-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
1046	chr2	60486935	60486936	rs359260	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p16.1	MIR4432	rs359260-G	NR	1E-8	(East Asian)	1.126	[1.08-1.17]	Illumina [6627481] (imputed)	N
1046	chr2	60486935	60486936	rs359260	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p16.1	intergenic	rs359260-T	NR	7E-7	(Chinese)	1.12	[1.07-1.17]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1046	chr2	60487015	60487016	rs2668733	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs2668733-C	0.365	9E-29		0.014	[0.012-0.016] unit decrease	NR [NR] (imputed)	N
1046	chr2	60490737	60490738	rs10174860	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p16.1	BCL11A	rs10174860-C	0.5797	8E-12		0.01783643	[0.013-0.023] unit increase	Affymetrix [~ 11515000] (imputed)	N
1046	chr2	60493484	60493485	rs4672375	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galanin peptide levels	21,758 European ancestry individuals	9,173 individuals	2p16.1		rs4672375-A	0.42	5E-59		0.1702	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1046	chr2	60493484	60493485	rs4672375	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2p16.1	intergenic	rs4672375-G	0.58	8E-19		0.17	unit increase	Illumina [5270624] (imputed)	N
1046	chr2	60494311	60494312	rs4671378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p16.1		rs4671378-C	NR	8E-10		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1046	chr2	60495037	60495038	rs4671379	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p16.1	BCL11A	rs4671379-T	0.4155	2E-11		0.01612516	[0.011-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1046	chr2	60496909	60496910	rs4671381	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	2p16.1	NR	rs4671381-C	0.5634	5E-8		1.0279605	NR	NR [8968716] (imputed)	N
1046	chr2	60499462	60499463	rs58593843	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.1	NR	rs58593843-A	NR	3E-9		5.951	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1046	chr2	60500143	60500144	rs10202231	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p16.1	intergenic	rs10202231-?	0.457	7E-7	(perphenazine-triglycerides)			Affymetrix [492900]	N
1046	chr2	60501215	60501216	rs2901000	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	2p16.1	NR	rs2901000-A	0.4285	3E-14		1.09	[1.07-1.12]	Affymetrix, Illumina [7072771] (imputed)	N
1046	chr2	60501215	60501216	rs2901000	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	2p16.1	BCL11A	rs2901000-A	0.43	2E-12		1.17	[1.12-1.22]	Illumina [up to 7441713] (imputed)	N
1046	chr2	60514992	60514993	rs4671386	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	2p16.1	AL833181, BCL11A, JB153659, PAPOLG, MIR4432, Mir_562	rs4671386-C	0.4251	2E-6		1.19	[1.11-1.3]	Illumina [7300000] (imputed)	N
1046	chr2	60519256	60519257	rs4411675	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.1	NR	rs4411675-T	NR	6E-9		5.813	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1046	chr2	60521310	60521311	rs6545798	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p16.1	NR	rs6545798-T	0.5896	1E-11		1.0416667	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1046	chr2	60526617	60526618	rs6545799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p16.1		rs6545799-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1046	chr2	60526746	60526747	rs1029984	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2p16.1	LOC101927285, MIR4432HG	rs1029984-G		1E-8		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
1046	chr2	60526746	60526747	rs1029984	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2p16.1	BCL11A	rs1029984-T	0.563	1E-8		0.013	[0.0085-0.0175] unit increase	Illumina [~ 250000] (imputed)	N
1046	chr2	60528051	60528052	rs2419903	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p16.1	BCL11A	rs2419903-T	0.4161	2E-12		0.014321689	[0.01-0.018] unit decrease	Affymetrix [11514654] (imputed)	N
1046	chr2	60534198	60534199	rs6545803	21810746	Chantarangsu S	2011-08-01	Clin Infect Dis	Genome-wide association study identifies variations in 6p21.3 associated with nevirapine-induced rash.	Nevirapine-induced rash	72 Thai ancestry nevirapine-induced rash HIV cases, 77 Thai ancestry nevirapine-tolerant rash HIV cases	88 Thai ancestry nevirapine-induced rash HIV cases, 145 Thai ancestry nevirapine-tolerant HIV cases	2p16.1	intergenic	rs6545803-G	0.50	6E-6				Illumina [499730]	N
1046	chr2	60536885	60536886	rs17025388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p16.1		rs17025388-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1046	chr2	60536885	60536886	rs17025388	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p16.1	NR	rs17025388-G	0.0340871	2E-14		0.0644976	[0.048-0.081] unit increase	NR [19129689] (imputed)	N
1046	chr2	60538888	60538889	rs6706313	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio in diabetes	51,541 European, African American, East Asian, South Asian or Hispanic ancestry individuals	NA	2p16.1	MIR4432HG, BCL11A	rs6706313-A	0.7416	3E-8		0.0408	[0.026-0.055] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1046	chr2	60551800	60551801	rs1512226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma or type 2 diabetes	28,862 European ancestry asthma cases, 422,048 European ancestry asthma controls, 159,208 European ancestry diabetes cases and controls	NA	2p16.1	NR	rs1512226-?	NR	2E-8				Affymetrix [up to 8270000] (imputed)	N
1046	chr2	60553142	60553143	rs7567242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 1 diabetes	6,447 European ancestry cases, 451,248 European ancestry controls, 1,219 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p16.1		rs7567242-A	NR	4E-9		0.1416	[0.094-0.189] unit increase	Affymetrix, Illumina [25837106] (imputed)	N
1047	chr2	60557704	60557705	rs7589501	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		2p16.1	BCL11A	rs7589501-A	NR	5E-6		1.0747628		Affymetrix, Illumina [1918233] (imputed)	N
1047	chr2	60568744	60568745	rs243088	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	2p16.1	BCL11A	rs243088-T	0.46	3E-6		1.09	[1.04-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
1047	chr2	60568744	60568745	rs243088	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2p16.1	BCL11A	rs243088-T	NR	7E-10	(men)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1047	chr2	60568744	60568745	rs243088	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2p16.1	BCL11A	rs243088-T	0.44676300149567	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1047	chr2	60578842	60578843	rs10180282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p16.1	AC007381.3	rs10180282-C	0.550014	2E-9		0.013316858	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60578842	60578843	rs10180282	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	2p16.1	BCL11A	rs10180282-T	0.456	6E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [42907111] (imputed)	N
1047	chr2	60578842	60578843	rs10180282	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p16.1	Intergenic	rs10180282-T	NR	7E-6		0.0234796	[0.013-0.034] unit increase	Illumina [13520550] (imputed)	N
1047	chr2	60583664	60583665	rs243024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2p16.1		rs243024-A	NR	2E-10		0.0502	[0.035-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1047	chr2	60583664	60583665	rs243024	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2p16.1	BCL11A	rs243024-A	0.68	3E-7		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1047	chr2	60583664	60583665	rs243024	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p16.1	BCL11A	rs243024-A	0.4599	3E-20		1.06	[1.05-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1047	chr2	60584818	60584819	rs243021	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p16.1	BCL11A	rs243021-A	0.4473	6E-7	(EA)	0.0768	[0.047-0.107] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1047	chr2	60584818	60584819	rs243021	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2p16.1	BCL11A	rs243021-A	0.4473	2E-7		0.051	[0.031-0.071] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1047	chr2	60584818	60584819	rs243021	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	2p16.1	BCL11A	rs243021-A		3E-15		1.08	[1.06-1.10]	Affymetrix, Illumina [2426886] (imputed)	N
1047	chr2	60584836	60584837	rs139132350	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2p16.1		rs139132350-G	NR	8E-6	(GLM)	3.7624	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1047	chr2	60585805	60585806	rs243019	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2p16.1	MIR4432HG	rs243019-C	0.455830717095865	2E-15		0.0566	[0.043-0.071] unit increase	NR [5035015] (imputed)	N
1047	chr2	60586099	60586100	rs171450	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	2p16.1	NR	rs171450-?	NR	7E-6		0.053639602	[NR] unit increase	Illumina [at least 269494] (imputed)	N
1047	chr2	60586706	60586707	rs243018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p16.1		rs243018-G	NR	6E-14		0.0492	[0.036-0.062] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1047	chr2	60586706	60586707	rs243018	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p16.1	NR	rs243018-G	0.463	2E-33		0.056	[0.047-0.065] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1047	chr2	60586706	60586707	rs243018	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p16.1	NR	rs243018-G	0.5038	1E-39		0.0508	[0.043-0.058] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1047	chr2	60586706	60586707	rs243018	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2p16.1		rs243018-G	0.675140993	4E-8		1.0512488	[1.032594914-1.070239627]	Illumina [8919992] (imputed)	N
1047	chr2	60586706	60586707	rs243018	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2p16.1	BCL11A	rs243018-G	0.666	2E-15		1.06	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1047	chr2	60586706	60586707	rs243018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2p16.1		rs243018-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1047	chr2	60593633	60593634	rs243047	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p16.1	BCL11A	rs243047-C	NR	5E-6		0.12051381	[0.068-0.173] unit decrease	Illumina [> 6200000] (imputed)	N
1047	chr2	60602891	60602892	rs243034	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	2p16.1	MIR4432	rs243034-C	0.394	1E-6		1.521	[1.28-1.76]	NR [~ 2000000] (imputed)	N
1047	chr2	60607727	60607728	rs13027161	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	2p16.1	BCL11A	rs13027161-?	NR	3E-12				NR [2500000] (imputed)	N
1047	chr2	60608758	60608759	rs2540917	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p16.1		rs2540917-T	0.5998	2E-9		0.1198811	[0.076-0.164] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1047	chr2	60608758	60608759	rs2540917	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p16.1		rs2540917-T	0.5997	1E-10		0.09700962	[0.066-0.128] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1047	chr2	60608758	60608759	rs2540917	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	2p16.1	BCL11A	rs2540917-C	NR	1E-14		0.0	[0.002-0.004] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1047	chr2	60609473	60609474	rs9967849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs9967849-T	0.31664	1E-88				Affymetrix, Illumina [24332387] (imputed)	N
1047	chr2	60609473	60609474	rs9967849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p16.1	NR	rs9967849-T	0.402722	4E-91		0.037981	[0.034-0.042] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1047	chr2	60609473	60609474	rs9967849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p16.1		rs9967849-?	NR	7E-81				NR [~ 8900000] (imputed)	N
1047	chr2	60610410	60610411	rs2540914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p16.1		rs2540914-C	NR	4E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1047	chr2	60610410	60610411	rs2540914	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2p16.1	NR	rs2540914-A	NR	3E-6		0.009822	[0.0057-0.0139] unit increase	Illumina [~ 540852]	N
1047	chr2	60610680	60610681	rs56335585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p16.1	AC007381.2	rs56335585-T	0.003776	2E-16		0.17137298	[0.13-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60610680	60610681	rs56335585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p16.1	AC007381.2	rs56335585-T	0.00377499999999997	1E-14		0.16170144	[0.12-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60610680	60610681	rs56335585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p16.1	AC007381.2	rs56335585-T	0.00378800000000001	1E-23		0.172046	[0.13-0.21] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60610680	60610681	rs56335585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p16.1	AC007381.2	rs56335585-T	0.00379099999999999	2E-22		0.19982532	[0.16-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60610811	60610812	rs2540913	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2p16.1		rs2540913-C	NR	4E-14		0.3	[0.22-0.38] unit increase	Illumina [97506867]	N
1047	chr2	60610811	60610812	rs2540913	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2p16.1		rs2540913-C	NR	8E-11		0.1	[0.061-0.139] unit increase	Illumina [94681438]	N
1047	chr2	60611436	60611437	rs925484	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	2p16.1	AC007381.2	rs925484-C	0.5993	9E-13		0.1492	[0.11-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1047	chr2	60612456	60612457	rs2137283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.1		rs2137283-?	NR	2E-147				NR [~ 8900000] (imputed)	N
1047	chr2	60616681	60616682	rs243077	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p16.1	AC007381.2	rs243077-G	0.4163	2E-9		0.012211269	[0.0082-0.0162] unit increase	Affymetrix [up to 18485882] (imputed)	N
1047	chr2	60617562	60617563	rs243076	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p16.1		rs243076-A	0.42	3E-32		11.83	z score increase	Affymetrix [9061022] (imputed)	N
1047	chr2	60617562	60617563	rs243076	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p16.1	NR	rs243076-A	0.4118	1E-17				NR [9056863] (imputed)	N
1047	chr2	60617562	60617563	rs243076	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p16.1		rs243076-G	0.594	2E-94		0.23	[-0.25--0.21] % decrease	Affymetrix [NR] (imputed)	N
1047	chr2	60617562	60617563	rs243076	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	2p16.1		rs243076-?	NR	2E-18				NR [9705931] (imputed)	N
1047	chr2	60617760	60617761	rs243074	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.1	NR	rs243074-A	NR	4E-8		5.489	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1047	chr2	60618795	60618796	rs243072	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	AC007381.2	rs243072-C	NR	7E-10		0.01824089	[0.012-0.024] unit increase	Affymetrix [NR]	N
1047	chr2	60620285	60620286	rs243070	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2p16.1	BCL11A	rs243070-T	0.72	4E-13	(EA, MCV)	0.181	[0.13-0.23] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1047	chr2	60621765	60621766	rs243066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p16.1	NR	rs243066-G	0.402998	9E-163		0.053224	[0.049-0.057] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1047	chr2	60622898	60622899	rs243063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs243063-T	0.327084	1E-205				Affymetrix, Illumina [24246363] (imputed)	N
1047	chr2	60622898	60622899	rs243063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p16.1	NR	rs243063-T	0.401833	1E-204		0.056339	[0.053-0.06] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1047	chr2	60622898	60622899	rs243063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs243063-T	0.322253	2E-159				Affymetrix, Illumina [20825802] (imputed)	N
1047	chr2	60626304	60626305	rs12713421	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p16.1	intergenic	rs12713421-A	0.352	7E-6		0.031	[0.017-0.045] unit increase	Affymetrix [7947838] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p16.1		rs5831579-T	0.410546	4E-34		0.030322883	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p16.1		rs5831579-T	0.410677	5E-36		0.031837236	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p16.1		rs5831579-T	0.410702	9E-86		0.046094157	[0.041-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p16.1		rs5831579-T	0.410605	2E-70		0.0584471	[0.054-0.063] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p16.1		rs5831579-T	0.410608	6E-62		0.041718755	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p16.1	intergenic	rs5831579-T	0.4122	7E-31		0.04199508	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p16.1	intergenic	rs5831579-T	0.4122	8E-63		0.06033344	[0.053-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
1047	chr2	60629438	60629440	rs5831579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p16.1	intergenic	rs5831579-T	0.4122	4E-57		0.05761482	[0.051-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
1047	chr2	60629443	60629445	rs3059421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p16.1		rs3059421-T	NR	2E-54		0.0324	[0.028-0.037] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1047	chr2	60629443	60629445	rs3059421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p16.1		rs3059421-T	NR	3E-107		0.0533	[0.049-0.058] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1047	chr2	60629443	60629445	rs3059421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p16.1		rs3059421-T	NR	2E-96		0.0503	[0.046-0.055] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1047	chr2	60632923	60632924	rs56158183	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p16.1	NR	rs56158183-A	0.0717	1E-8		0.024524994	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1047	chr2	60633282	60633283	rs182175540	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p16.1	NR	rs182175540-?	NR	8E-10	(Ep-CAM)	1.31426	[0.9-1.73] unit increase	Illumina [11901634] (imputed)	N
1047	chr2	60633462	60633463	rs13035645	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 27)	3,566 European ancestry individuals	4,680 European ancestry individuals	2p16.1		rs13035645-A	0.258168693	2E-8				Illumina [7417619] (imputed)	N
1047	chr2	60635353	60635354	rs72001329	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p16.1	NR	rs72001329-C	0.4786	3E-6	(EA)	0.0312	[0.018-0.044] unit decrease	Illumina [~ 11800000] (imputed)	N
1047	chr2	60636415	60636416	rs12464462	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	2p16.1	BCL11A	rs12464462-G	0.410445	9E-10		0.0879553	[0.06-0.116] unit decrease	Affymetrix, Illumina [62116689] (imputed)	N
1047	chr2	60639903	60639904	rs12476132	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs12476132-?		1E-9				NR [7428630] (imputed)	N
1047	chr2	60640502	60640503	rs58926146	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p16.1	NR	rs58926146-T	0.29097	7E-12		0.023586	[0.017-0.03] unit increase	NR [19129689] (imputed)	N
1047	chr2	60641328	60641329	rs13028240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p16.1		rs13028240-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1047	chr2	60642898	60642899	rs12463461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p16.1		rs12463461-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1047	chr2	60647455	60647456	rs149801367	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p16.1		rs149801367-T	0.43	5E-46		14.25	z score increase	Affymetrix [9061022] (imputed)	N
1047	chr2	60647455	60647456	rs149801367	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p16.1	NR	rs149801367-T	0.426	1E-17				NR [9056863] (imputed)	N
1047	chr2	60647455	60647456	rs149801367	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p16.1	NR	rs149801367-T	NR	3E-8		0.0345051	NR unit increase	NR [NR] (imputed)	N
1047	chr2	60649142	60649143	rs12997266	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p16.1		rs12997266-A	0.42	9E-66		17.13	z score increase	Affymetrix [9061022] (imputed)	N
1047	chr2	60649142	60649143	rs12997266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3	rs12997266-?		1E-10				NR [7428630] (imputed)	N
1047	chr2	60649142	60649143	rs12997266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p16.1	STIL, CMPK1, FOXE3, FOXD2	rs12997266-?		3E-10				NR [7428630] (imputed)	N
1047	chr2	60649142	60649143	rs12997266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2p16.1	DAB1	rs12997266-?		1E-9				NR [7428630] (imputed)	N
1047	chr2	60649142	60649143	rs12997266	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p16.1	BCL11A	rs12997266-?		2E-16				NR [7428630] (imputed)	N
1047	chr2	60655550	60655551	rs55986781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs55986781-T	0.0823	2E-13		0.0187	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1047	chr2	60659306	60659307	rs6718203	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	BCL11A	rs6718203-C	NR	6E-9		0.026813626	[0.018-0.036] unit decrease	Affymetrix [NR]	N
1047	chr2	60665767	60665768	rs1011407	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p16.1	NA	rs1011407-A	0.8883	7E-11		0.0172	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
1047	chr2	60678500	60678501	rs45600937	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p16.1	NR	rs45600937-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1047	chr2	60678500	60678501	rs45600937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs45600937-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1048	chr2	60703324	60703325	rs45625438	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p16.1	BCL11A	rs45625438-A	0.004471	3E-15		0.14963754	[0.11-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60703324	60703325	rs45625438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.1		rs45625438-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1048	chr2	60704483	60704484	rs7581162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p16.1	Intergenic	rs7581162-A	0.4359	2E-19	(MTAG)	0.0163	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr2	60704483	60704484	rs7581162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p16.1	Intergenic	rs7581162-T	0.5641	6E-12		0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr2	60704483	60704484	rs7581162	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2p16.1	BCL11A	rs7581162-?	NR	3E-13		7.285	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1048	chr2	60704483	60704484	rs7581162	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2p16.1	BCL11A	rs7581162-?	NR	2E-7		5.239	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1048	chr2	60704738	60704739	rs6731647	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p16.1	BCL11A	rs6731647-G	0.45303	3E-23		0.024660049	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1048	chr2	60704738	60704739	rs6731647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p16.1	BCL11A	rs6731647-G	0.4523	7E-28		0.03959024	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60704932	60704933	rs7593947	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	2p16.1	BCL11A	rs7593947-A	0.526	1E-6		0.011	[0.0065-0.0155] unit decrease	Affymetrix [11535925] (imputed)	N
1048	chr2	60704932	60704933	rs7593947	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p16.1	NR	rs7593947-A	0.5126	2E-11		0.014944781	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1048	chr2	60707893	60707894	rs7579014	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	2p16.1	BCL11A	rs7579014-A	0.640718	6E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1048	chr2	60707893	60707894	rs7579014	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	2p16.1	BCL11A	rs7579014-A	0.64	1E-7		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1048	chr2	60710570	60710571	rs13019832	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p16.1	BCL11A	rs13019832-A	0.4203	1E-8		0.011754353	[0.0077-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1048	chr2	60710570	60710571	rs13019832	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.1	NR	rs13019832-A	NR	2E-10		6.368	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1048	chr2	60710570	60710571	rs13019832	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	BCL11A	rs13019832-A	NR	5E-11		0.019471414	[0.014-0.025] unit increase	Affymetrix [NR]	N
1048	chr2	60713234	60713235	rs10189857	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p16.1	NR	rs10189857-A	0.420477	4E-15		0.050195884	[0.038-0.063] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p16.1	NR	rs10189857-?		6E-21		0.020463	[0.016-0.025] unit decrease	Affymetrix [19400418] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	2p16.1	NR	rs10189857-?		2E-7		0.0116306	[0.0072-0.016] unit decrease	Affymetrix [19400418] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p16.1		rs10189857-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p16.1		rs10189857-?	NR	7E-16				NR [~ 8900000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p16.1	Intergenic	rs10189857-A	0.5739	1E-28	(MTAG)	0.0185	[0.015-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p16.1	Intergenic	rs10189857-A	0.5739	3E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs10189857-A	0.5654	5E-29		0.0158	[0.013-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs10189857-A	0.5654	9E-35	(MTAG)	0.0162	[0.014-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p16.1	Intergenic	rs10189857-A	0.5707	1E-27	(MTAG)	0.0252	[0.021-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p16.1	Intergenic	rs10189857-A	0.5707	2E-15		0.0229	[0.017-0.029] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p16.1	NR	rs10189857-A	NR	5E-12		6.908	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1048	chr2	60713234	60713235	rs10189857	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p16.1	BCL11A	rs10189857-A	NR	6E-16		0.023793397	[0.018-0.03] unit increase	Affymetrix [NR]	N
1048	chr2	60715178	60715179	rs6545817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p16.1		rs6545817-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1048	chr2	60718042	60718043	rs1427407	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	2p16.1		rs1427407-T	0.155953	2E-11		0.0381189	[0.027-0.049] unit increase	NR [11722792] (imputed)	N
1048	chr2	60718042	60718043	rs1427407	25372704	Mtatiro SN	2014-11-05	PLoS One	Genome wide association study of fetal hemoglobin in sickle cell anemia in Tanzania.	Fetal hemoglobin levels in sickle cell anemia	1,213 Tanzanian ancestry cases	321 Afro-Caribbean and Sub-Saharan African cases	2p16.1	BCL11A	rs1427407-?	0.78	4E-53		0.3	[NR] unit decrease	Illumina [15153765] (imputed)	N
1048	chr2	60718042	60718043	rs1427407	17767159	Menzel S	2007-09-02	Nat Genet	A QTL influencing F cell production maps to a gene encoding a zinc-finger protein on chromosome 2p15.	F-cell distribution	179 European ancestry individuals	90 European ancestry individuals	2p16.1	BCL11A	rs1427407-?	0.14	6E-31		13.1	[NR] % variance	Illumina [308015]	N
1048	chr2	60718346	60718347	rs7599488	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2p16.1		rs7599488-T	0.4254	1E-11		56.879543	z score increase	NR [6814003]	N
1048	chr2	60718346	60718347	rs7599488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p16.1	BCL11A	rs7599488-T	0.427254	3E-39		0.03289241	[0.028-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p16.1	BCL11A	rs7599488-T	0.427125	4E-44		0.0504438	[0.046-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p16.1	BCL11A	rs7599488-T	0.42711	2E-37		0.031699445	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2p16.1	NR	rs7599488-?		2E-9				NR [8377093]	N
1048	chr2	60718346	60718347	rs7599488	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p16.1	BCL11A	rs7599488-T	0.4236	3E-15		0.01609844	[0.012-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p16.1	NR	rs7599488-?	NR	3E-8		1.0519007	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p16.1	BCL11A	rs7599488-?	NR	4E-16		0.016694613	[0.013-0.021] unit decrease	NR [7306098]	N
1048	chr2	60718346	60718347	rs7599488	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	2p16.1	NR	rs7599488-T	0.437	9E-9		0.014121279	[0.0093-0.0189] unit increase	NR [~ 10000000] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p16.1	NR	rs7599488-T	0.437	2E-10		0.013978	[0.0097-0.0183] unit increase	NR [9732723] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	BCL11A	rs7599488-T	NR	4E-9		5.897	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1048	chr2	60718346	60718347	rs7599488	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p16.1	NR	rs7599488-C	NR	6E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1048	chr2	60719969	60719970	rs766432	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA		BCL11A	rs766432-A	0.8507	2E-12		0.03501601	[0.025-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60719969	60719970	rs766432	27022141	Liu L	2016-03-27	Exp Biol Med (Maywood)	Original Research: A case-control genome-wide association study identifies genetic modifiers of fetal hemoglobin in sickle cell disease.	High fetal hemoglobin in sickle cell disease	up to 376 African American cases, up to 360 African American controls	NA		BCL11A	rs766432-?	NR	5E-18				Illumina [at least 498706]	N
1048	chr2	60719969	60719970	rs766432	25042611	Griffin PJ	2014-07-19	Am J Hematol	The genetics of hemoglobin A2 regulation in sickle cell anemia.	Hemoglobin A2 levels in sickle cell anemia	618 African American cases	173 African American cases, 398 Chinese ancestry individuals		BCL11A	rs766432-C	0.29	3E-10				Illumina [NR]	N
1048	chr2	60719969	60719970	rs766432	23406172	Milton JN	2013-02-14	Br J Haematol	Genetic determinants of haemolysis in sickle cell anaemia.	Sickle cell anemia (haemolysis)	1,117 individuals	213 African ancestry, West African ancestry and Afro-Caribbean individuals, 745 individuals		BCL11A	rs766432-?	NR	9E-7		0.22	NR unit increase	Illumina [569554]	N
1048	chr2	60719969	60719970	rs766432	20183929	Nuinoon M	2009-11-19	Hum Genet	A genome-wide association identified the common genetic variants  influence disease severity in beta0-thalassemia/hemoglobin E.	Beta thalassemia/hemoglobin E disease	235 Thai-Chinese ancestry mild cases, 383 Thai-Chinese ancestry severe cases	52 Indonesian ancestry mild cases, 122 Indonesian ancestry severe cases		BCL11A	rs766432-?	0.24	1E-10		2.8	[2.04-3.84]	Illumina [548094]	N
1048	chr2	60719969	60719970	rs766432	20018918	Solovieff N	2009-12-16	Blood	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases		BCL11A	rs766432-C	0.33	1E-29	(African)	0.23	[NR] unit increase	Illumina [~ 600000]	N
1048	chr2	60719969	60719970	rs766432	20018918	Solovieff N	2009-12-16	Blood	Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5' olfactory receptor gene cluster.	Fetal hemoglobin levels	848 Black cases	305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases		BCL11A	rs766432-C	0.25	1E-7	(East Asian)	0.32	[NR] unit increase	Illumina [~ 600000]	N
1048	chr2	60720245	60720246	rs11886868	18245381	Uda M	2008-02-05	Proc Natl Acad Sci U S A	Genome-wide association study shows BCL11A associated with persistent fetal hemoglobin and amelioration of the phenotype of beta-thalassemia.	Fetal hemoglobin levels	4,305 European ancestry individuals	521 European ancestry individuals		BCL11A	rs11886868-T	0.80	7E-35		0.48	[NR] unit decrease	Affymetrix [362129]	N
1048	chr2	60720318	60720319	rs34211119	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p16.1	BCL11A	rs34211119-G	0.6929	5E-9		0.0226954	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60720318	60720319	rs34211119	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p16.1	BCL11A	rs34211119-G	0.693	3E-9		0.0229666	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60720950	60720951	rs4671393	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals		BCL11A	rs4671393-A	0.136	3E-130	(HbF, Sardinian)	0.578	[0.53-0.62] g/dl increase	Illumina [~ 10900000] (imputed)	N
1048	chr2	60723265	60723266	rs7565301	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA		ENSG00000233953	rs7565301-A	NR	1E-8		0.018949965	[0.012-0.025] unit decrease	Affymetrix [NR]	N
1048	chr2	60723671	60723672	rs6729815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p16.1	BCL11A, AC009970.1	rs6729815-C	0.536422	5E-35		0.028362183	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60723671	60723672	rs6729815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p16.1	BCL11A, AC009970.1	rs6729815-C	0.5359	9E-30		0.03992251	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60723671	60723672	rs6729815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p16.1	BCL11A, AC009970.1	rs6729815-C	0.5358	5E-27		0.03806195	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60723904	60723905	rs45474996	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2p16.1	BCL11A, AC009970.1	rs45474996-A	0.1109	2E-8		0.018304162	[0.012-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1048	chr2	60724085	60724086	rs1896295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p16.1	BCL11A, AC009970.1	rs1896295-C	0.852413	1E-17		0.026936328	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p16.1		rs7606173-C	NR	3E-25		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p16.1	BCL11A, AC009970.1	rs7606173-C	0.429377	1E-75		0.041159846	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p16.1	NR	rs7606173-G	0.5779	9E-77				Affymetrix, Illumina [22063850] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p16.1	NR	rs7606173-G	0.572678	3E-76		0.035085	[0.031-0.039] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p16.1		rs7606173-?	NR	2E-87				NR [~ 8900000] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p16.1	BCL11A	rs7606173-C	NR	2E-25		0.040388	[0.033-0.048] unit decrease	Affymetrix [16832071] (imputed)	N
1048	chr2	60725450	60725451	rs7606173	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2p16.1	BCL11A, AC009970.1	rs7606173-C	0.4292	8E-21		0.0333849	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1048	chr2	60727415	60727416	rs7560588	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p16.1	BCL11A	rs7560588-A	0.2745	4E-11		0.01752612	[0.012-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1048	chr2	60727628	60727629	rs6709302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2p16.1	NR	rs6709302-A	NR	3E-12		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1048	chr2	60729293	60729294	rs10184550	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p16.1		rs10184550-G	0.44	4E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1048	chr2	60729293	60729294	rs10184550	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p16.1	NR	rs10184550-G	0.452029	2E-9		0.0192855	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1048	chr2	60734361	60734364	rs539947600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p16.1	BCL11A	rs539947600-G	0.210464	4E-9		0.016599622	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr2	60738226	60738227	rs1896297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p16.1	NR	rs1896297-T	0.655307	3E-10		0.012395	[0.0086-0.0162] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1048	chr2	60744330	60744331	rs168565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p16.1		rs168565-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1048	chr2	60753592	60753593	rs356992	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p16.1	NR	rs356992-C	0.3016	4E-12		0.016876938	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1048	chr2	60755762	60755763	rs45595933	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p16.1	BCL11A	rs45595933-G	0.82944	4E-11		0.0160955	[0.011-0.021] unit decrease	NR [13737936] (imputed)	N
1048	chr2	60757418	60757419	rs2457660	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p16.1	NR	rs2457660-T	0.633028	4E-10		0.012037	[0.0083-0.0158] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1048	chr2	60757418	60757419	rs2457660	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p16.1		rs2457660-?	NR	2E-12		0.0145946	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1048	chr2	60757418	60757419	rs2457660	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	2p16.1	NR	rs2457660-?	0.3641	1E-8		1.0354006	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1048	chr2	60759746	60759747	rs2556375	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer), 5,603 European ancestry individuals	2p16.1	BCL11A	rs2556375-G	0.17	6E-19		0.0652336	[0.051-0.08] unit increase	Affymetrix [10109774] (imputed)	N
1048	chr2	60762501	60762502	rs2556378	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Prostate-specific antigen levels	33,572 Icelandic ancestry individuals	NA	2p16.1	BCL11A	rs2556378-T	0.154	5E-8		0.044	unit increase	Affymetrix, Illumina [up to 32463442] (imputed)	N
1048	chr2	60762501	60762502	rs2556378	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	2p16.1		rs2556378-T	0.154	3E-12		1.12	[1.08-1.16]	Affymetrix, Illumina [42907111] (imputed)	N
1048	chr2	60762501	60762502	rs2556378	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	2p16.1	BCL11A	rs2556378-T	0.154	3E-11		1.11	[1.08-1.14]	Affymetrix, Illumina [42907111] (imputed)	N
1048	chr2	60762501	60762502	rs2556378	22012869	Hinney A	2011-10-19	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study in German patients with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	495 European ancestry child and adolescent cases, 1,300 European ancestry adult controls	1,023 European ancestry individuals from 320 families, 2455 European ancestry cases and 896 European ancestry controls from 2,064 trios	2p16.1	BCL11A	rs2556378-T	NR	7E-6				Illumina [487484]	N
1048	chr2	60768977	60768978	rs2665668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p16.1		rs2665668-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1048	chr2	60768977	60768978	rs2665668	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs2665668-A	0.6413	1E-10		0.0094	[0.0065-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr2	60783571	60783572	rs3765154	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p16.1	BCL11A	rs3765154-T	0.298	2E-9		0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1048	chr2	60785936	60785937	rs12328348	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p16.1	NR	rs12328348-?	NR	1E-9		1.06067	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1048	chr2	60785936	60785937	rs12328348	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p16.1	BCL11A	rs12328348-A	0.5309	5E-9		0.013871281	[0.0092-0.0185] unit increase	Affymetrix [11515109] (imputed)	N
1048	chr2	60787201	60787201	rs70959844	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p16.1	BCL11A	rs70959844-T	0.558101	2E-10		0.0135252	[0.0094-0.0177] unit decrease	NR [16516521] (imputed)	N
1048	chr2	60788480	60788481	rs1397318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p16.1		rs1397318-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1048	chr2	60799983	60799984	rs70959845	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2p16.1		rs70959845-?	NR	4E-6	(overall)	1.22		Illumina [11595112] (imputed)	N
1048	chr2	60811583	60811584	rs356999	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs356999-A	0.3802	3E-12		0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr2	60814465	60814466	rs2195086	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p16.1	NA	rs2195086-T	0.8328	3E-9		0.0144	[0.0097-0.0191] unit decrease	NR [~ 27400000] (imputed)	N
1049	chr2	60826801	60826802	rs2665658	32882024	Lee SHR	2020-09-03	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for TCF3-PBX1 acute lymphoblastic leukemia in children.	TCF3-PBX1 fusion in childhood acute lymphoblastic leukemia	40 European ancestry cases, 1,454 European ancestry controls	28 African American cases, 186 African American controls, 30 Hispanic cases, 424 Hispanic controls, 24 cases, 343 controls	2p16.1		rs2665658-A	0.35	2E-8	(EA)	3.98	[2.46-6.44]	Affymetrix [7550069] (imputed)	N
1049	chr2	60826801	60826802	rs2665658	32882024	Lee SHR	2020-09-03	J Natl Cancer Inst	Genome-wide association study of susceptibility loci for TCF3-PBX1 acute lymphoblastic leukemia in children.	Childhood acute lymphoblastic leukemia (TCF3-PBX1 fusion)	40 European ancestry cases, 2,057 European ancestry controls	28 African American cases, 1,380 African American controls, 30 Hispanic cases, 682 Hispanic controls, 24 cases, 1,399 controls	2p16.1		rs2665658-A	0.37	2E-8	(EA)	4.0	[2.47-6.49]	Affymetrix [7528340] (imputed)	N
1049	chr2	60834662	60834663	rs35744461	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p16.1		rs35744461-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1049	chr2	60842859	60842860	rs147642366	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	2p16.1	NR	rs147642366-C	NR	7E-6		0.7491	[0.4-1.1] SD units decrease	NR [10700000] (imputed)	N
1049	chr2	60844309	60844310	rs11695541	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	2p16.1	BCL11A	rs11695541-C	0.08851671018276752	6E-6	(AA)	0.6257	[0.36-0.9] unit increase	Illumina [at least 988306] (imputed)	N
1049	chr2	60888201	60888202	rs881952	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2p16.1	intergenic	rs881952-?		5E-6	(DI)	2.3	[1.28-3.32] unit decrease	Illumina [693128]	N
1049	chr2	60897578	60897579	rs148261157	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	2p16.1	BCL11A	rs148261157-A	0.033008999999999955	5E-6		1.25	[1.14-1.38]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1049	chr2	60897578	60897579	rs148261157	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	2p16.1	BCL11A	rs148261157-A	0.03	3E-8		1.26	[1.16-1.36]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1049	chr2	60907329	60907330	rs13411201	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p16.1	intergenic	rs13411201-A	0.131	8E-7		1.08589	[1.05-1.12]	NR [9372253] (imputed)	N
1049	chr2	60924019	60924020	rs7589998	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p16.1	LOC442017	rs7589998-G	0.0060	5E-6	(Diet fat )	0.03	[NR] g/d increase	Illumina [899892]	N
1049	chr2	60945554	60945555	rs68110799	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2p16.1	PAPOLG	rs68110799-A	0.26	5E-9				NR [> 9500000] (imputed)	N
1049	chr2	60947727	60947728	rs116781238	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	2p16.1	Intergenic	rs116781238-A	0.048	6E-7		0.161	[0.098-0.224] unit increase	Affymetrix [7287191] (imputed)	N
1050	chr2	60953599	60953600	rs114581300	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p16.1	NR	rs114581300-?	NR	4E-8				Illumina [7760689] (imputed)	N
1050	chr2	60958286	60958287	rs6710364	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p16.1	Intergenic	rs6710364-G	NR	2E-6		0.0300208	[0.018-0.042] unit increase	Illumina [13520550] (imputed)	N
1050	chr2	60981708	60981709	rs62149375	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p16.1	NR	rs62149375-?	NR	6E-7		5.008	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1050	chr2	60983968	60983969	rs2099613	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2p16.1	NR	rs2099613-T	0.0764	8E-6		0.1525	[0.086-0.219] unit increase	Illumina [up to 1980188] (imputed)	N
1050	chr2	60986575	60986576	rs62149377	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	2p16.1	PAPOLG	rs62149377-?	NR	9E-8		1.14	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
1050	chr2	60990127	60990128	rs11686767	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Permanent dental caries (decayed and filled teeth)	2,570 adults	NA	2p16.1		rs11686767-?	NR	3E-7		0.63	unit decrease	Illumina [8859951] (imputed)	N
1050	chr2	61018514	61018515	rs116386746	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p16.1		rs116386746-C	0.0249	4E-8		0.0249	[0.016-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1050	chr2	61018514	61018515	rs116386746	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p16.1	Intergenic	rs116386746-C	0.0249	1E-9	(MTAG)	0.0259	[0.018-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1050	chr2	61042149	61042150	rs35043490	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	2p16.1	PAPOLG	rs35043490-G	0.1677	6E-10		0.1	NR SD units decrease	Illumina [21568490] (imputed)	N
1050	chr2	61043833	61043834	rs13034020	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	2p16.1	REL	rs13034020-G	0.16	3E-6		1.28	[1.16-1.43]	Affymetrix, Illumina [1004829] (imputed)	N
1050	chr2	61054979	61054980	rs2420518	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p16.1	PAPOLG	rs2420518-C	NR	6E-7		1.053	NR	Affymetrix, Illumina [8278136] (imputed)	N
1050	chr2	61059009	61059010	rs6709875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	2p16.1		rs6709875-A	0.137587	9E-9		0.0372232	[0.025-0.05] unit decrease	Illumina [13470073] (imputed)	N
1050	chr2	61060042	61060043	rs115291397	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p16.1	Intergenic	rs115291397-A	NR	2E-9	(between families)	6.033	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1050	chr2	61066665	61066666	rs1432295	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	2p16.1	NR	rs1432295-G	0.4	1E-6		1.24	[NR]	Illumina [296129]	N
1050	chr2	61066665	61066666	rs1432295	21037568	Enciso-Mora V	2010-10-31	Nat Genet	A genome-wide association study of Hodgkin's lymphoma identifies new susceptibility loci at 2p16.1 (REL), 8q24.21 and 10p14 (GATA3).	Hodgkin's lymphoma	589 European ancestry cases, 5,199 European ancestry controls	2,057 European ancestry cases, 3,416 European ancestry controls	2p16.1	REL	rs1432295-G	0.40	2E-8		1.22	[1.14-1.30]	Illumina [504374]	N
1050	chr2	61068166	61068167	rs1432296	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	2p16.1		rs1432296-?	NR	8E-10		0.051	NR unit decrease	NR [5890016] (imputed)	N
1050	chr2	61068166	61068167	rs1432296	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2p16.1	PAPOLG, LINC01185	rs1432296-?	NR	1E-8		1.18	[1.10-1.26]	Illumina [at least 5000000] (imputed)	N
1050	chr2	61072566	61072567	rs35741374	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs35741374-T		7E-14		1.08		NR [8016731] (imputed)	N
1050	chr2	61072566	61072567	rs35741374	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs35741374-T	NR	1E-13		1.08	NR	NR [8016731] (imputed)	N
1050	chr2	61072566	61072567	rs35741374	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA		AC010733.4	rs35741374-?	NR	4E-12	(Psoriasis)	1.2	[1.15-1.27]	Affymetrix, Illumina [~ 5200000]	N
1050	chr2	61072663	61072664	rs56095903	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2p16.1		rs56095903-T	NR	9E-13		1.12	[1.08-1.15]	NR [13810676] (imputed)	N
1050	chr2	61074685	61074686	rs1177203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	2p16.1		rs1177203-C	NR	4E-9		0.1211	[0.081-0.161] unit decrease	Affymetrix, Illumina [25844455] (imputed)	N
1051	chr2	61080481	61080482	rs842625	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2p16.1	REL	rs842625-G	0.556	2E-10		1.16	[1.11-1.21]	Illumina [up to 4778154] (imputed)	N
1051	chr2	61080481	61080482	rs842625	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2p16.1	REL	rs842625-G	0.556	1E-8	(EA)	1.2	[1.13-1.28]	Illumina [up to 4778154] (imputed)	N
1051	chr2	61081309	61081310	rs702872	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p16.1	AC010733.4	rs702872-?	NR	4E-11	(subset analysis)			Illumina [130052]	N
1051	chr2	61081541	61081542	rs702873	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	2p16.1	FLJ16341, REL	rs702873-T	NR	3E-11		1.216545	[1.18-1.25]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1051	chr2	61081541	61081542	rs702873	22170493	Ellinghaus E	2011-12-15	J Invest Dermatol	Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL.	Psoriatic arthritis	535 European ancestry cases, 3,432 European ancestry controls	1,931 European ancestry cases, 6,785 European ancestry controls	2p16.1	REL	rs702873-?	NR	2E-7		1.2	[1.13-1.28]	Illumina [1160703] (imputed)	N
1051	chr2	61081541	61081542	rs702873	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	2p16.1	REL	rs702873-G	0.56	4E-9		1.12	[1.04-1.20]	Illumina [535475]	N
1051	chr2	61083505	61083506	rs62149416	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	2p16.1	FLJ16341, REL	rs62149416-T	NR	4E-12		1.165	NR	Illumina [up to 11532644] (imputed)	N
1051	chr2	61083505	61083506	rs62149416	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	2p16.1	FLJ16341, REL	rs62149416-T	0.635	2E-17		1.17		Illumina [111236] (imputed)	N
1051	chr2	61091949	61091950	rs842636	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	2p16.1	NR	rs842636-G	0.56	6E-6		1.15	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
1051	chr2	61095244	61095245	rs842639	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2p16.1	FLJ16341	rs842639-A	0.67	2E-14		1.1		Illumina [161311]	N
1051	chr2	61104984	61104985	rs10203477	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2p16.1	REL, LINC01185, PUS10	rs10203477-?	NR	4E-8		0.93		Illumina [109572]	N
1051	chr2	61118738	61118739	rs10185028	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2p16.1	NR	rs10185028-G	0.227	3E-8		1.04	[1.026-1.054]	Affymetrix [15688218] (imputed)	N
1051	chr2	61122972	61122973	rs6545836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p16.1		rs6545836-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p16.1	REL	rs34695944-T	NR	2E-13		0.0896104	[-0.00929-0.18851] unit decrease	Illumina [8380626] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p16.1	REL	rs34695944-T	0.63	5E-14	(EA)	0.11793	[0.087-0.149] unit decrease	Illumina [8380626] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2p16.1	REL	rs34695944-G	0.37	4E-13		1.13	[1.10-1.17]	Illumina [133816] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p16.1	REL	rs34695944-C	0.36	4E-16	(EA)	1.13	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p16.1	REL	rs34695944-C	0.27	2E-15		1.12	[1.09-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2p16.1	REL	rs34695944-G	0.37	3E-8		1.13		Illumina [129464] (imputed)	N
1051	chr2	61124849	61124850	rs34695944	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2p16.1	REL	rs34695944-G	0.37	4E-6		1.0918		Illumina [129464] (imputed)	N
1051	chr2	61136128	61136129	rs13031237	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2p16.1	REL	rs13031237-?	NR	1E-11				Illumina [129464] (imputed)	N
1051	chr2	61136128	61136129	rs13031237	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2p16.1	REL	rs13031237-?	NR	1E-9				Illumina [129464] (imputed)	N
1051	chr2	61136128	61136129	rs13031237	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2p16.1	REL	rs13031237-T	0.36	8E-7		1.13	[1.07-1.18]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1051	chr2	61163580	61163581	rs67766926	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	2p16.1	retro-NONO	rs67766926-?	NR	7E-9	(Shared)			Affymetrix, Illumina [~ 5200000]	N
1051	chr2	61164330	61164331	rs13017599	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	2p16.1	REL, FLJ16341	rs13017599-G	NR	6E-7		1.193	NR	Illumina [11532644] (imputed)	N
1051	chr2	61164330	61164331	rs13017599	22170493	Ellinghaus E	2011-12-15	J Invest Dermatol	Genome-wide meta-analysis of psoriatic arthritis identifies susceptibility locus at REL.	Psoriatic arthritis	535 European ancestry cases, 3,432 European ancestry controls	1,931 European ancestry cases, 6,785 European ancestry controls	2p16.1	REL	rs13017599-?	NR	1E-8		1.27	[1.18-1.35]	Illumina [1160703] (imputed)	N
1051	chr2	61164330	61164331	rs13017599	19503088	Gregersen PK	2009-06-07	Nat Genet	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	2p16.1	REL	rs13017599-A	0.34	2E-12		1.21	[1.15-1.28]	Illumina [278502]	N
1051	chr2	61164728	61164729	rs6726160	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2p16.1	PUS10	rs6726160-?	NR	2E-8		0.1045	unit decrease	Illumina [up to 143074]	N
1051	chr2	61176072	61176073	rs2278300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	2p16.1		rs2278300-G	NR	1E-9		0.1252	[0.085-0.165] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
1051	chr2	61184650	61184651	rs4643526	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2p16.1	PUS10	rs4643526-A	0.19	6E-8	(EA, fixed effects)	1.05	[1.03-1.07]	Illumina [15539996] (imputed)	N
1051	chr2	61186828	61186829	rs13003464	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2p16.1	PUS10, PEX13, REL, KIAA1841, C2orf74, PAPOLG, USP34	rs13003464-G	0.487	5E-9		1.05	[1.00-1.40]	Affymetrix, Illumina [1060934] (imputed)	N
1051	chr2	61186828	61186829	rs13003464	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2p16.1	PUS10	rs13003464-G	0.388	4E-16		1.17		Illumina [139553]	N
1051	chr2	61186828	61186829	rs13003464	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	2p16.1	PUS10, REL, CCDC139	rs13003464-G	NR	7E-9		1.18	[NR]	Illumina [266047]	N
1051	chr2	61186828	61186829	rs13003464	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2p16.1	AHSA2, REL	rs13003464-G	0.40	4E-13		1.15	[1.11-1.20]	Illumina [292387]	N
1051	chr2	61187414	61187415	rs67927699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2p16.1		rs67927699-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	2p16.1	PUS10	rs7608910-?		4E-23				Illumina [9578670] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2p16.1	PUS10	rs7608910-?		3E-28				Illumina [9725440] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2p16.1	PUS10	rs7608910-?		6E-14				Illumina [9560910] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p16.1	PUS10	rs7608910-?	NR	2E-32	(subset analysis)			Illumina [130052]	N
1051	chr2	61204855	61204856	rs7608910	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p16.1	NR	rs7608910-G	0.3909	1E-23	(EA)	1.1355296	[1.11-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p16.1	NR	rs7608910-G	0.3909	3E-36	(EA)	1.1347865	[1.12-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p16.1	NR	rs7608910-G	0.3909	3E-23	(EA)	1.1281834	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p16.1	AHSA2, REL, KIAA1841, C2orf74	rs7608910-G	0.394	9E-32		1.138	[1.105-1.171]	Affymetrix, Illumina [1230000] (imputed)	N
1051	chr2	61204855	61204856	rs7608910	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2p16.1	PUS10	rs7608910-G	0.39	2E-14		1.19	[1.14-1.24]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1051	chr2	61204916	61204917	rs4560096	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2p16.1	PUS10	rs4560096-G		2E-13		1.1451596		Illumina [252970]	N
1052	chr2	61217541	61217542	rs10188217	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	2p16.1	NR	rs10188217-T	0.48	4E-8		0.91	[NR]	NR [8546065] (imputed)	N
1052	chr2	61217541	61217542	rs10188217	21298027	Festen EA	2011-01-27	PLoS Genet	A meta-analysis of genome-wide association scans identifies IL18RAP, PTPN2, TAGAP, and PUS10 as shared risk loci for Crohn's disease and celiac disease.	Crohn's disease and celiac disease	3,230 European ancestry Crohn's disease cases, 768 European ancestry celiac disease cases, 6,251 European ancestry controls	1,835 European ancestry Crohn's disease cases, 3,149 European ancestry celiac disease cases, 6,383 European ancestry controls	2p16.1	PUS10	rs10188217-C	NR	1E-11	(combined)			Affymetrix, Illumina [471504]	N
1052	chr2	61224258	61224259	rs10181042	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2p16.1	REL, C2orf74	rs10181042-T	0.42	7E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [953241] (imputed)	N
1052	chr2	61230646	61230647	rs2564114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p15		rs2564114-G	NR	4E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1052	chr2	61242409	61242410	rs1177228	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p15	PUS10	rs1177228-G	NR	2E-19		1.0953	NR	Affymetrix, Illumina [8278136] (imputed)	N
1052	chr2	61244409	61244410	rs62150970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p15	NR	rs62150970-G	NR	8E-11		0.0211	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1052	chr2	61254032	61254033	rs10496090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p15	Intergenic	rs10496090-T	0.8403	1E-10	(MTAG)	0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1052	chr2	61276262	61276263	rs1177230	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	2p15	KIAA1841, USP34, FAM161A, AHSA2, CCT4, REL, XPO1, COMMD1, PUS10, PAPOLG, PEX13	rs1177230-?	NR	8E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1052	chr2	61286592	61286593	rs1177268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs1177268-G	0.559048	5E-13				Affymetrix, Illumina [23472807] (imputed)	N
1052	chr2	61295121	61295122	rs1177279	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p15	KIAA1841	rs1177279-A	0.2779	2E-8		0.00883119	[0.0058-0.0119] unit increase	Affymetrix [12370749]	N
1052	chr2	61303596	61303597	rs11308796	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p15	KIAA1841	rs11308796-C	0.565239	7E-13		0.016187508	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr2	61366095	61366095	rs148785604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2p15		rs148785604-TTTCCTTCC	NR	6E-9		0.0705	[0.047-0.094] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1053	chr2	61366095	61366095	rs148785604	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p15	NR	rs148785604-TTTCCTTCC	0.562	6E-31		0.002601	[0.0022-0.003] unit decrease	Affymetrix [NR] (imputed)	N
1053	chr2	61367415	61367417	rs201126181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p15		rs201126181-C	NR	2E-30		0.0288	[0.024-0.034] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1053	chr2	61376523	61376524	rs181170661	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p15	NR	rs181170661-?	NR	9E-10	(Ep-CAM)	2.89701	[1.97-3.82] unit increase	Illumina [11901634] (imputed)	N
1053	chr2	61379285	61379286	rs1665272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p15	KIAA1841, C2orf74, RP11-493E12.1	rs1665272-G	0.554617	2E-10		0.014196499	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr2	61384905	61384906	rs7558954	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p15		rs7558954-?	NR	4E-8				NR [NR]	N
1053	chr2	61387253	61387254	rs1177308	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p15		rs1177308-?	NR	1E-8				NR [NR]	N
1053	chr2	61387253	61387254	rs1177308	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p15		rs1177308-?	NR	1E-8				NR [NR]	N
1053	chr2	61397126	61397127	rs11685226	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p15		rs11685226-?	NR	4E-8				NR [NR]	N
1053	chr2	61397126	61397127	rs11685226	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p15		rs11685226-?	NR	2E-8				NR [NR]	N
1053	chr2	61404930	61404931	rs2600667	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p15	AHSA2	rs2600667-T	0.2963	9E-14		1.0291243		Affymetrix [11880941] (imputed)	N
1053	chr2	61409594	61409595	rs9653547	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p15	NR	rs9653547-A	NR	5E-11		0.0232	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1053	chr2	61418342	61418343	rs777592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p15	USP34	rs777592-C	0.327407	3E-21		0.0176369	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr2	61418342	61418343	rs777592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p15	USP34	rs777592-C	0.327406	8E-17		0.019628787	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr2	61418342	61418343	rs777592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p15		rs777592-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1053	chr2	61429567	61429568	rs811372	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	2p15	USP34	rs811372-T	0.367	8E-10	(Japanese)	0.026	[0.018-0.034] unit increase	Illumina [5864938] (imputed)	N
1053	chr2	61431066	61431066	rs5831600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p15	USP34	rs5831600-TA	0.47515	2E-9		0.014878213	[0.01-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
1053	chr2	61437486	61437487	rs12998475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p15		rs12998475-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1053	chr2	61451743	61451744	rs7570707	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	2p15	USP34	rs7570707-?	NR	3E-8		0.02428	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
1053	chr2	61470125	61470126	rs11125871	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2p15	USP34	rs11125871-C	0.605	6E-9		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1053	chr2	61472631	61472632	rs4671400	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2p15	NR	rs4671400-?	NR	5E-6	(AA)	0.805	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1054	chr2	61479009	61479010	rs935861	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2p15	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs935861-?		4E-10				NR [7428630] (imputed)	N
1054	chr2	61482260	61482261	rs10496091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p15		rs10496091-A	NR	3E-14		0.0132	[0.0099-0.0165] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1054	chr2	61482260	61482261	rs10496091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p15		rs10496091-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1054	chr2	61482260	61482261	rs10496091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p15		rs10496091-A	0.2841	4E-17		0.0131	[0.01-0.0162] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1054	chr2	61482260	61482261	rs10496091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p15	Intergenic	rs10496091-A	0.2841	4E-18	(MTAG)	0.0126	[0.0097-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr2	61484555	61484556	rs2060824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p15		rs2060824-C	NR	3E-14		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1054	chr2	61486627	61486628	rs10169482	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2p15	NR	rs10169482-T	NR	4E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
1054	chr2	61489268	61489269	rs28718376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2p15	USP34	rs28718376-T	NR	9E-6		0.0288555	[0.016-0.042] unit decrease	Illumina [13520550] (imputed)	N
1054	chr2	61494449	61494450	rs4671402	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p15	NR	rs4671402-A	0.52	3E-11		0.0121	[0.0085-0.0157] unit increase	NR [NR]	N
1054	chr2	61496141	61496141	rs35440896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2p15		rs35440896-AT	NR	1E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1054	chr2	61498247	61498248	rs62152273	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p15	NR	rs62152273-?	NR	6E-6		4.521	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1054	chr2	61499018	61499019	rs4353638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p15		rs4353638-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1054	chr2	61540641	61540642	rs2694633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p15		rs2694633-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1054	chr2	61543530	61543531	rs34835259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p15		rs34835259-C	NR	8E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1054	chr2	61544758	61544759	rs183237934	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2p15	USP34	rs183237934-T	0.994	7E-6		0.3941	[0.22-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1054	chr2	61551451	61551452	rs144256094	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p15	NR	rs144256094-?	NR	2E-9	(Ep-CAM)	1.33389	[0.9-1.77] unit increase	Illumina [11901634] (imputed)	N
1054	chr2	61552144	61552145	rs7572603	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p15	USP34	rs7572603-C	0.6722	3E-6	(East Asian)	0.0293	[0.017-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1054	chr2	61552144	61552145	rs7572603	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p15	USP34	rs7572603-C	0.6386	4E-12		0.0232	[0.017-0.03] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1054	chr2	61552144	61552145	rs7572603	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p15	USP34	rs7572603-C	0.6264	1E-7		0.022367	[0.014-0.031] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1054	chr2	61552144	61552145	rs7572603	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p15	NR	rs7572603-C	0.3533	6E-8	(men)	0.0293	[0.019-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1054	chr2	61563407	61563408	rs921153	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p15	NR	rs921153-A	0.15898400000000001	3E-10		0.0093581	[0.0061-0.0127] unit increase	Affymetrix [16585854] (imputed)	N
1054	chr2	61563407	61563408	rs921153	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p15	NR	rs921153-A	0.15898400000000001	4E-7		0.0087663	[0.005-0.0126] unit increase	Affymetrix [16585866] (imputed)	N
1054	chr2	61569133	61569134	rs12617371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p15	USP34	rs12617371-G	0.541354	8E-18		0.021162843	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1054	chr2	61580118	61580119	rs35115993	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p15	Intergenic	rs35115993-T	0.1407	9E-9	(MTAG)	0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1054	chr2	61592736	61592737	rs72813566	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p15	USP34	rs72813566-A	0.85	2E-10		6.36	z-score increase	Affymetrix [4311822] (imputed)	N
1055	chr2	61605613	61605614	rs10208769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p15	NR	rs10208769-A	0.515578	6E-33		0.021995	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1055	chr2	61606096	61606097	rs17008851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p15	NR	rs17008851-G	0.13283500000000004	2E-16		0.00957649	[0.0072-0.012] unit increase	Affymetrix [16582909] (imputed)	N
1055	chr2	61606096	61606097	rs17008851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p15	NR	rs17008851-G	0.13283500000000004	4E-12		0.00906233	[0.0064-0.0117] unit increase	Affymetrix [16582965] (imputed)	N
1055	chr2	61607509	61607510	rs988911	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p15	USP34	rs988911-A	0.1334	9E-8		0.0029	[0.0019-0.0039] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1055	chr2	61613260	61613261	rs2593620	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRG3	5,359 Icelandic ancestry individuals	NA	2p15		rs2593620-G	0.4764	5E-14		0.141045	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
1055	chr2	61614300	61614301	rs2463097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p15		rs2463097-?	NR	3E-26				NR [~ 8900000] (imputed)	N
1055	chr2	61615063	61615065	rs566280888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p15		rs566280888-T	NR	5E-8		0.0177	[0.011-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1055	chr2	61616652	61616653	rs4672440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p15	USP34	rs4672440-G	0.654335	7E-42		0.031850606	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1055	chr2	61616652	61616653	rs4672440	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p15		rs4672440-T	0.3465	5E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1055	chr2	61627633	61627634	rs10199672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p15		rs10199672-G	0.696467	6E-12		0.0152397	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
1055	chr2	61627633	61627634	rs10199672	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p15	USP34	rs10199672-?	NR	2E-12		0.022027029	[0.016-0.028] unit increase	Illumina [27896057] (imputed)	N
1055	chr2	61629635	61629636	rs12998931	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p15	NR	rs12998931-?	NR	7E-6		4.495	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1055	chr2	61638951	61638952	rs4672441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2p15		rs4672441-C	NR	2E-9		0.0362	[0.024-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1055	chr2	61651527	61651528	rs115219852	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p15	NR	rs115219852-?	NR	7E-7	(Latino)	1.184	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1055	chr2	61662554	61662555	rs1186699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p15		rs1186699-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1055	chr2	61667966	61667967	rs115327327	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs115327327-T	0.2722	5E-6		4.574	z score increase	Illumina [7275796] (imputed)	N
1055	chr2	61672408	61672409	rs111634538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p15		rs111634538-G	NR	1E-10		0.0194	[0.014-0.025] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1055	chr2	61678600	61678601	rs2256469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p15		rs2256469-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1055	chr2	61680992	61680993	rs812925	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p15	USP34	rs812925-G	0.35419999999999996	7E-17		1.030609		Affymetrix [11880941] (imputed)	N
1055	chr2	61680992	61680993	rs812925	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p15	USP34	rs812925-G	0.35419999999999996	7E-17		1.031073		Affymetrix [11880941] (imputed)	N
1055	chr2	61680992	61680993	rs812925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p15	USP34	rs812925-G	0.3508	2E-20		0.03447335	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr2	61687213	61687214	rs778138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p15		rs778138-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1055	chr2	61703318	61703319	rs10206089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2p15	RP11-355B11.2	rs10206089-A	0.3775	7E-11		0.02595066	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr2	61703318	61703319	rs10206089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2p15	RP11-355B11.2	rs10206089-A	0.3774	2E-9		0.02373051	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr2	61703318	61703319	rs10206089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2p15	RP11-355B11.2	rs10206089-A	0.3775	1E-9		0.02425261	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr2	61703318	61703319	rs10206089	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2p15	RP11-355B11.2	rs10206089-A	0.3775	3E-9		0.02368922	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1055	chr2	61710572	61710573	rs11125883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p15		rs11125883-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1055	chr2	61711814	61711815	rs2421200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs2421200-T	0.469235	1E-25				Affymetrix, Illumina [23114412] (imputed)	N
1055	chr2	61711814	61711815	rs2421200	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p15	NR	rs2421200-T	0.486641	1E-26		0.020525	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1055	chr2	61716548	61716548	rs35045881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p15	XPO1	rs35045881-CA	0.474501	2E-19		0.020956779	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1055	chr2	61730786	61730787	rs146542417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p15	XPO1	rs146542417-A	0.322966	6E-29		0.026889104	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr2	61760755	61760756	rs13390751	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p15		rs13390751-C	0.16	1E-9		6.06	z score increase	Affymetrix [9061022] (imputed)	N
1056	chr2	61764139	61764140	rs3771258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p15		rs3771258-T	NR	1E-18		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1056	chr2	61764139	61764140	rs3771258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p15	XPO1	rs3771258-T	0.612798	1E-25		0.023722012	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr2	61768239	61768244	rs10542411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p15	XPO1	rs10542411-ATATAT	0.408519	7E-13		0.016167557	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr2	61768239	61768244	rs10542411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p15	XPO1	rs10542411-A	0.59149	2E-15		0.017839005	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1056	chr2	61768239	61768244	rs10542411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2p15	XPO1	rs10542411-A	0.5907	5E-10		0.02270624	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1056	chr2	61768239	61768244	rs10542411	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2p15	XPO1	rs10542411-A	0.5907	3E-10		0.02302626	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1056	chr2	61768420	61768421	rs1562308	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2p15	XPO1	rs1562308-A	0.395945	2E-10	(EA)	0.00801334	[0.0055-0.0105] unit decrease	Affymetrix [~ 8800000] (imputed)	N
1056	chr2	61768744	61768745	rs6742276	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p15	XPO1	rs6742276-A	0.61	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1056	chr2	61770125	61770126	rs1562309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p15	NR	rs1562309-A	0.615185	1E-15		0.015425	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1056	chr2	61772256	61772257	rs6545883	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p15		rs6545883-A	0.3925	6E-10		0.08764164	[0.06-0.115] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1056	chr2	61772256	61772257	rs6545883	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	2p15	NR	rs6545883-?	0.52	5E-6		1.2	[1.11-1.25]	Affymetrix [> 333754] (imputed)	N
1056	chr2	61774472	61774473	rs11887205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p15		rs11887205-G	NR	5E-22		0.0195	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1056	chr2	61774472	61774473	rs11887205	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2p15		rs11887205-T	0.387	1E-13				Affymetrix [10369434] (imputed)	N
1056	chr2	61774472	61774473	rs11887205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs11887205-G	0.627144	4E-33				Affymetrix, Illumina [24649327] (imputed)	N
1056	chr2	61775363	61775364	rs2441380	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p15	XPO1, FAM161A	rs2441380-C	0.61	2E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1056	chr2	61781993	61781994	rs778756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p15		rs778756-G	NR	4E-10		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1056	chr2	61781993	61781994	rs778756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p15		rs778756-G	NR	8E-11		0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1056	chr2	61781993	61781994	rs778756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	2p15	NR	rs778756-G	NR	3E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [9000000] (imputed)	N
1056	chr2	61781993	61781994	rs778756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs778756-G	0.553018	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
1056	chr2	61781993	61781994	rs778756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs778756-G	0.550987	1E-14				Affymetrix, Illumina [19872809] (imputed)	N
1056	chr2	61781993	61781994	rs778756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p15	NR	rs778756-G	0.579738	2E-15		0.015959	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1056	chr2	61781993	61781994	rs778756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p15		rs778756-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1056	chr2	61798046	61798047	rs55705084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p15		rs55705084-C	NR	3E-16		0.0211	[0.016-0.026] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1056	chr2	61799574	61799575	rs113774595	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p15	NR	rs113774595-T	0.304	2E-8		0.00662211	[0.0043-0.0089] unit decrease	NR [9732723] (imputed)	N
1056	chr2	61803666	61803666	rs11451874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p15		rs11451874-AT	NR	8E-9		0.0183	[0.012-0.025] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1056	chr2	61806998	61806999	rs6733446	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p15		rs6733446-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1056	chr2	61821776	61821777	rs74936631	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2p15	XPO1, FAM161A	rs74936631-?	NR	1E-6		1.32	[1.09-1.60]	Illumina [at least 5000000] (imputed)	N
1056	chr2	61836037	61836038	rs114840557	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p15	NR	rs114840557-?	NR	5E-6		4.586	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1056	chr2	61836234	61836235	rs7608483	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2p15	USP34	rs7608483-A	0.4171	3E-11		0.1171	[0.083-0.152] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1057	chr2	61872802	61872803	rs111510828	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	2p15	intergenic	rs111510828-G	0.824176006877976	2E-6		1.2493753		Illumina [7574753] (imputed)	N
1057	chr2	61876964	61876965	rs2421332	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	2p15	LOC100132037, LOC647077	rs2421332-C	0.24	3E-9	(n-6 PUFA)			Affymetrix [590000]	N
1057	chr2	61878413	61878414	rs28551472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p15	Intergenic	rs28551472-A	0.657	3E-8	(MTAG)	0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1057	chr2	61970731	61970732	rs7596428	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p15	NR	rs7596428-?		9E-6				Illumina [4322238] (imputed)	N
1058	chr2	62038110	62038111	rs72621541	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p15	NR	rs72621541-T	0.01394	4E-10	(DIABLO)	0.01083	NR unit increase	Illumina [1671387] (imputed)	N
1058	chr2	62066985	62066986	rs139266382	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p15	NR	rs139266382-?	NR	1E-11	(Ep-CAM)	1.4932	[1.06-1.93] unit increase	Illumina [11901634] (imputed)	N
1058	chr2	62071337	62071338	rs17014577	34822396	Pott J	2021-10-28	Metabolites	Sex-Specific Causal Relations between Steroid Hormones and Obesity-A Mendelian Randomization Study.	17-hydroxyprogesterone (17-OHP) levels	2,220 men	NA	2p15		rs17014577-C	NR	4E-8		0.11258	[0.072-0.153] unit increase	Affymetrix [10900000] (imputed)	N
1058	chr2	62103767	62103768	rs6545914	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	2p15	NR	rs6545914-A	0.0291136	9E-7	(women)	0.497122	[0.3-0.69] % decrease	Affymetrix [532676] (imputed)	N
1058	chr2	62103767	62103768	rs6545914	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	2p15	NR	rs6545914-A	0.0291136	6E-6	(women)	0.556922	[0.32-0.79] % decrease	Affymetrix [532676] (imputed)	N
1058	chr2	62105133	62105134	rs62149891	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	2p15	CCT4	rs62149891-A	0.29	6E-9	(Met)	0.23	[0.15-0.31] unit decrease	Illumina [1288202] (imputed)	N
1058	chr2	62105133	62105134	rs62149891	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	2p15	CCT4	rs62149891-A	0.29	2E-8	(Thr)	0.23	[0.15-0.31] unit decrease	Illumina [1288202] (imputed)	N
1059	chr2	62174571	62174572	rs186559207	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	2p15		rs186559207-?	NR	3E-7		4.37	[2.75-6.95]	Affymetrix, Illumina [29826485] (imputed)	N
1059	chr2	62191771	62191772	rs143765411	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p15	COMMD1	rs143765411-?	NR	2E-11		0.047330946	[0.034-0.061] unit increase	Illumina [27896057] (imputed)	N
1059	chr2	62191877	62191878	rs62149908	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	2p15	COMMD1	rs62149908-?	NR	1E-8		5.7	NR z score decrease	Illumina [8500000] (imputed)	N
1059	chr2	62192134	62192135	rs7604016	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	2p15	NR	rs7604016-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	2.5	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1059	chr2	62198301	62198302	rs144706112	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p15	NR	rs144706112-?	NR	1E-11	(Ep-CAM)	1.51882	[1.08-1.96] unit increase	Illumina [11901634] (imputed)	N
1059	chr2	62250237	62250238	rs113180498	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	2p15	COMMD1	rs113180498-A	0.0308463	4E-6		1.95477	[1.4712-2.59728]	NR [7263501] (imputed)	N
1060	chr2	62278807	62278808	rs146396094	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p15	NR	rs146396094-A	0.982724	7E-9		0.043943	[0.029-0.059] unit decrease	NR [NR]	N
1060	chr2	62286551	62286552	rs2901460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p15	COMMD1	rs2901460-G	0.2953	1E-14		0.02990286	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1060	chr2	62339679	62339680	rs11125907	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p15	B3GNT2	rs11125907-G	0.6296875	1E-6	(B3GNT2, 7980_72_3)	0.12358191	[0.073-0.174] unit increase	Illumina [> 1000000] (imputed)	N
1060	chr2	62347841	62347842	rs13033531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p15	NR	rs13033531-G	0.344439	3E-10		0.01225	[0.0084-0.0161] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1061	chr2	62394126	62394127	rs7601633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p15	RP11-270B14.1	rs7601633-G	0.34382	8E-20		0.021505876	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1061	chr2	62394126	62394127	rs7601633	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs7601633-G	0.334785	4E-29				Affymetrix, Illumina [24332387] (imputed)	N
1061	chr2	62394126	62394127	rs7601633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p15		rs7601633-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1061	chr2	62394768	62394768	rs35014657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p15	RP11-270B14.1	rs35014657-CA	0.34151	2E-22		0.022637792	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1061	chr2	62394768	62394768	rs35014657	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p15	RP11-270B14.1	rs35014657-CA	0.3417	2E-12		0.02624446	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1061	chr2	62404983	62404984	rs1868583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p15	NR	rs1868583-G	0.341515	8E-19		0.018008	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1061	chr2	62405080	62405081	rs1868582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p15		rs1868582-G	0.342401	7E-28		0.0245346	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1061	chr2	62405080	62405081	rs1868582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p15		rs1868582-G	0.342396	3E-17		0.019564552	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1061	chr2	62405080	62405081	rs1868582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p15		rs1868582-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1061	chr2	62405159	62405160	rs144403535	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	2p15	COMMD1, B3GNT2	rs144403535-A	NR	7E-8		1.095	[0.7-1.49] unit increase	Illumina [27700000] (imputed)	N
1061	chr2	62406999	62407011	rs70962766	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	2p15	RPSA26, B3GNT2	rs70962766-C	0.99	5E-7		0.2	[0.11-0.37]	Illumina [8744746] (imputed)	N
1061	chr2	62409752	62409753	rs146327939	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p15	NR	rs146327939-?	NR	2E-10	(Ep-CAM)	1.46133	[1.01-1.91] unit increase	Illumina [11901634] (imputed)	N
1061	chr2	62410514	62410515	rs13018813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p15	NR	rs13018813-T	0.338306	6E-29		0.021875	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1061	chr2	62410514	62410515	rs13018813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs13018813-T	0.324898	6E-17				Affymetrix, Illumina [20825802] (imputed)	N
1061	chr2	62437708	62437709	rs9636441	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p15	NR	rs9636441-C	0.28984200000000004	7E-10		0.0167895	[0.011-0.022] unit increase	Affymetrix [16585745] (imputed)	N
1061	chr2	62452660	62452661	rs11900673	22446963	Okada Y	2012-03-25	Nat Genet	Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.	Rheumatoid arthritis	4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls	5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls	2p15	B3GNT2	rs11900673-T	0.28	1E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [1948139]	N
1061	chr2	62461119	62461120	rs13385025	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p15	B3GNT2	rs13385025-A	NR	3E-6		0.102865	[0.061-0.145] unit increase	Illumina [8380626] (imputed)	N
1061	chr2	62461119	62461120	rs13385025	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p15	B3GNT2	rs13385025-A	0.17	9E-7		1.11	[1.07-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1061	chr2	62510825	62510826	rs149198877	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2p15	snoU13	rs149198877-A	0.0091	7E-7		0.3703	[0.22-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1061	chr2	62520338	62520339	rs72803383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p15		rs72803383-A	0.148708	2E-12		0.022155127	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QSOX2	5,354 Icelandic ancestry individuals	NA	2p15		rs4672497-G	0.253	7E-17		0.173426	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2p15		rs4672497-G	0.555753	3E-8		0.0206157	[0.013-0.028] unit decrease	Illumina [13476266] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	2p15		rs4672497-G	0.556189	4E-8		0.0205061	[0.013-0.028] unit increase	Illumina [13477028] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p15		rs4672497-C	0.779	5E-15		0.1	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p15		rs4672497-G	0.220128	8E-40		0.035396557	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p15		rs4672497-G	0.220191	5E-15		0.020818122	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p15		rs4672497-G	0.220157	1E-29		0.030795245	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p15		rs4672497-G	0.220185	2E-23		0.0244336	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p15		rs4672497-G	0.220156	2E-12		0.01881428	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs4672497-C	0.767545	4E-49				Affymetrix, Illumina [22063850] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p15	NR	rs4672497-C	0.778864	4E-50		0.03393	[0.029-0.038] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs4672497-G	0.29318	5E-42				Affymetrix, Illumina [24246363] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	2p15	NR	rs4672497-C	0.41412	6E-11		0.028128	[0.02-0.037] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p15		rs4672497-?	NR	1E-42				NR [~ 8900000] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2p15	B3GNT2, TMEM17	rs4672497-?	NR	5E-8		0.0253	[0.016-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	2p15	B3GNT2, TMEM17	rs4672497-?	NR	3E-8		0.02578	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p15	NR	rs4672497-G	NR	7E-15		0.0362264	[0.027-0.046] unit decrease	Affymetrix [16832071] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2p15	intergenic	rs4672497-G	0.2211	7E-11		0.02809057	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2p15	intergenic	rs4672497-G	0.2212	8E-10		0.02657948	[0.018-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1062	chr2	62523564	62523565	rs4672497	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p15	intergenic	rs4672497-G	0.2212	3E-12		0.03001147	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1062	chr2	62530257	62530258	rs72803397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p15		rs72803397-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1062	chr2	62530257	62530258	rs72803397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p15		rs72803397-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1062	chr2	62535081	62535082	rs13430258	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p15	NR	rs13430258-G	0.534478	2E-10		0.0155063	[0.011-0.02] unit increase	Affymetrix [16585745] (imputed)	N
1062	chr2	62536670	62536671	rs7573187	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p15	NR	rs7573187-A	0.534724	1E-11		0.0189785	[0.013-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1062	chr2	62536771	62536772	rs146928446	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	ICD10 D04.7: Carcinoma in situ of skin of lower limb, including hip	430 European ancestry cases, 455,918 European ancestry controls	NA	2p15		rs146928446-C	0.001649	3E-9		7.73	[5.19-10.27] unit increase	NR [11842647] (imputed)	N
1062	chr2	62544390	62544391	rs7583027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2p15		rs7583027-C	NR	8E-10		0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1062	chr2	62544390	62544391	rs7583027	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2p15	snoU13	rs7583027-A	0.357133	4E-10		0.059402887	[0.041-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
1062	chr2	62544390	62544391	rs7583027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2p15		rs7583027-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	2p15	NR	rs10865331-?	NR	1E-8		5.72	[NR] z-score increase	Illumina [1387382] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	2p15	B3GNT2	rs10865331-A	0.38	9E-12		1.155	NR	Illumina [up to 11532644] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p15	NR	rs10865331-A	0.377	4E-10	(EA)	1.0816035	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	2p15	B3GNT2	rs10865331-A	0.374	5E-10		1.12		Illumina [111236] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2p15	intergenic	rs10865331-A	0.396	1E-9		1.098	[1.062-1.134]	Affymetrix, Illumina [1230000] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	2p15	intergenic	rs10865331-A	0.37	7E-34				Illumina [2223620] (imputed)	N
1062	chr2	62551471	62551472	rs10865331	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2p15	B3GNT2	rs10865331-A	0.40	2E-19		1.27	[1.18-1.37]	Illumina [288662]	N
1062	chr2	62552320	62552321	rs11679753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p15		rs11679753-G	0.618823	2E-12		0.016031122	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1062	chr2	62552320	62552321	rs11679753	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p15	NR	rs11679753-?	NR	5E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1062	chr2	62552675	62552676	rs12467814	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	2p15	NR	rs12467814-G	NR	3E-7		0.8255	NR	Illumina [up to 1244428] (imputed)	N
1062	chr2	62554796	62554797	rs12991188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p15	NR	rs12991188-G	0.560068	4E-10				Affymetrix, Illumina [23472807] (imputed)	N
1062	chr2	62554796	62554797	rs12991188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p15	NR	rs12991188-G	0.598214	4E-11		0.013253	[0.0093-0.0172] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1062	chr2	62555736	62555737	rs13024541	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p15		rs13024541-C	0.62533	4E-11		0.015034123	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr2	62560331	62560332	rs4672505	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	2p15	NR	rs4672505-A		2E-9		1.07		NR [8016731] (imputed)	N
1062	chr2	62560331	62560332	rs4672505	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p15	intergenic	rs4672505-?	NR	2E-52	(subset analysis)			Illumina [130052]	N
1062	chr2	62563773	62563774	rs4073090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2p15		rs4073090-G	NR	5E-10		0.0131	[0.009-0.0172] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1062	chr2	62565793	62565794	rs55724869	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B3GNT2	5,359 Icelandic ancestry individuals	NA	2p15		rs55724869-C	0.4135	2E-12		0.132066	[0.095-0.169] unit increase	Illumina [7506463] (imputed)	N
1062	chr2	62568220	62568221	rs13001372	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	2p15	intergenic	rs13001372-A	NR	7E-9		1.36	[1.19-1.56]	Illumina [up to 294091]	N
1062	chr2	62568444	62568445	rs6759298	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2p15	Intergenic	rs6759298-C	0.378	5E-47		1.29		Illumina [128935]	N
1062	chr2	62568444	62568445	rs6759298	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2p15	Intergenic	rs6759298-C	0.378	4E-41	(EA)	1.31		Illumina [128935]	N
1062	chr2	62568444	62568445	rs6759298	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2p15	Intergenic	rs6759298-C	0.374	2E-6	(Asian)	1.28		Illumina [128935]	N
1062	chr2	62570572	62570573	rs4672507	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	2p15	intergenic	rs4672507-T	0.43	2E-12		1.38	[1.27-1.50]	Illumina [at least 106525] (imputed)	N
1063	chr2	62652719	62652720	rs11674244	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p15	intergenic	rs11674244-A	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1063	chr2	62679508	62679509	rs76503615	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p15	NR	rs76503615-A	NR	8E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
1063	chr2	62694116	62694117	rs10211312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p15	Intergenic	rs10211312-A	0.4476	4E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1063	chr2	62703005	62703006	rs11686508	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p15	Intergenic	rs11686508-A	0.5509	2E-11	(MTAG)	0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1063	chr2	62710607	62710608	rs78408772	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	2p15	NR	rs78408772-T	0.102	5E-8		0.021996435	[0.014-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1063	chr2	62710607	62710608	rs78408772	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2p15	NR	rs78408772-T	0.102	5E-11		0.024119	[0.017-0.031] unit decrease	NR [9732723] (imputed)	N
1063	chr2	62713532	62713533	rs6545946	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2p15	TMEM17, EHBP1, CPAMD8, AK3	rs6545946-C	0.77	7E-9		1.16	[1.06-1.27]	Affymetrix, Illumina [1060934] (imputed)	N
1063	chr2	62721895	62721896	rs13416544	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	2p15	TMEM17	rs13416544-G	NR	1E-8		1.05	[1.03-1.07]	Affymetrix [up to 49134253] (imputed)	N
1063	chr2	62725406	62725407	rs10191428	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to levetiracetam in focal epilepsy	258 European ancestry cases, 678 European ancestry controls	NA			rs10191428-?	NR	2E-6				Illumina [NR] (imputed)	N
1063	chr2	62725406	62725407	rs10191428	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to levetiracetam in epilepsy	343 European ancestry cases, 895 European ancestry controls	NA			rs10191428-?	NR	2E-6				Illumina [NR] (imputed)	N
1063	chr2	62730047	62730048	rs4672528	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p15	TMEM17	rs4672528-A	0.889592	2E-10		0.022619892	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr2	62748318	62748319	rs4672530	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	2p15		rs4672530-C	0.773396011	1E-14		0.8271014	[0.788231764-0.867887812]	Illumina [8919992] (imputed)	N
1063	chr2	62748368	62748369	rs4672531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p15		rs4672531-T	0.706172556	3E-15		0.17974885	[0.14-0.22] unit decrease	Illumina [13406905] (imputed)	N
1063	chr2	62752974	62752975	rs11125927	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p15	NR	rs11125927-G	NR	6E-20		1.088	[1.07-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1063	chr2	62752974	62752975	rs11125927	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p15	NR	rs11125927-G	0.246	5E-12		1.152	[1.11-1.20]	Affymetrix, Illumina [10186136] (imputed)	N
1063	chr2	62752974	62752975	rs11125927	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	2p15	TMEM17	rs11125927-G	0.772	4E-16		1.1627907	NR	Illumina [7742602] (imputed)	N
1063	chr2	62769987	62769988	rs12613959	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p15	TMEM17	rs12613959-A	0.1195	3E-9		0.021668768	[0.015-0.029] unit decrease	Affymetrix [11515109] (imputed)	N
1063	chr2	62780324	62780325	rs75204040	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2p15		rs75204040-G	NR	6E-8		1.1247329	NR	Affymetrix [7846216] (imputed)	N
1064	chr2	62817018	62817019	rs17576670	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p15	NR	rs17576670-?	NR	6E-7		0.3445	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1064	chr2	62839818	62839819	rs6731286	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		2p15	NR	rs6731286-T	0.658	1E-6		1.32	[1.18-1.47]	Illumina [~ 8000000] (imputed)	N
1064	chr2	62848318	62848319	rs13417156	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p15	NA	rs13417156-T	0.5755	7E-16		0.0135	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1064	chr2	62848318	62848319	rs13417156	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p15	NA	rs13417156-T	0.5755	7E-16		0.0135	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1064	chr2	62857465	62857466	rs77479170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p15		rs77479170-A	NR	2E-8		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1064	chr2	62857564	62857610	rs748960006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	2p15		rs748960006-T	0.142561	4E-9		0.042667	[0.029-0.057] unit decrease	Illumina [13461863] (imputed)	N
1064	chr2	62861352	62861353	rs6545966	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p15	NR	rs6545966-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1064	chr2	62861352	62861353	rs6545966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p15		rs6545966-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1064	chr2	62873194	62873195	rs10197780	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p15	Intergenic	rs10197780-T	0.2488	2E-8		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1064	chr2	62873915	62873916	rs6734002	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p15	TMEM17, EHBP1	rs6734002-?		6E-11		0.0323	[0.023-0.042] unit increase	Illumina [31500000] (imputed)	N
1064	chr2	62877385	62877386	rs6713090	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p15	TMEM17, EHBP1	rs6713090-?		3E-11		0.0284	[0.02-0.037] unit decrease	Illumina [31500000] (imputed)	N
1064	chr2	62878927	62878928	rs7420881	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p15	TMEM17, EHBP1	rs7420881-?	NR	4E-9		0.0317136	[0.021-0.042] unit increase	Illumina [4804024] (imputed)	N
1064	chr2	62887009	62887010	rs10177638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p15	Intergenic	rs10177638-T	0.6367	2E-12	(MTAG)	0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1064	chr2	62887009	62887010	rs10177638	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p15	Intergenic	rs10177638-C	0.3633	1E-10		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1064	chr2	62890221	62890222	rs1872790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p15		rs1872790-C	0.767775254	2E-8		0.06122097	[0.04-0.083] unit increase	Illumina [13429980] (imputed)	N
1064	chr2	62903186	62903187	rs10168771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p15	NR	rs10168771-A	0.658624300805714	2E-8		0.0054520764	[0.0036-0.0074] unit decrease	NR [NR]	N
1064	chr2	62903186	62903187	rs10168771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p15	NR	rs10168771-A	0.658624300805714	3E-8		0.006658208	[0.0043-0.009] unit decrease	NR [NR]	N
1064	chr2	62903186	62903187	rs10168771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p15	NR	rs10168771-A	0.658624300805714	2E-8		0.008656035	[0.0056-0.0117] unit decrease	NR [NR]	N
1064	chr2	62903186	62903187	rs10168771	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p15	NR	rs10168771-A	0.658624300805714	2E-8		0.0055262744	[0.0036-0.0075] unit decrease	NR [NR]	N
1064	chr2	62903460	62903461	rs10181359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p15		rs10181359-G	NR	2E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1064	chr2	62906615	62906616	rs10184918	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p15	NR	rs10184918-G	0.4422	4E-8				NR [9056863] (imputed)	N
1065	chr2	62915082	62915083	rs360789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2p15	NR	rs360789-T	NR	7E-13		0.0218	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1065	chr2	62915082	62915083	rs360789	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2p15	NR	rs360789-T	NR	1E-12		0.0217	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1065	chr2	62930202	62930203	rs115109216	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p15	EHBP1	rs115109216-C	0.9444	2E-6		0.0155	[0.0092-0.0218] unit increase	Affymetrix [~ 7740000] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p15	EHBP1	rs360804-A	NR	6E-19				Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2p15	EHBP1	rs360804-A	NR	2E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p15	EHBP1	rs360804-A	NR	1E-18				Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2p15	EHBP1	rs360804-A	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p15	EHBP1	rs360804-A	NR	6E-13		1.06	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2p15	EHBP1	rs360804-A	NR	3E-6	(EA)	0.866	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62939396	62939397	rs360804	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2p15	EHBP1	rs360804-A	NR	2E-7		0.944	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1065	chr2	62950434	62950435	rs360798	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p15	EHBP1	rs360798-A	0.815	4E-6		0.038	[0.022-0.054] unit increase	Affymetrix [7947838] (imputed)	N
1065	chr2	62953165	62953166	rs360799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	2p15		rs360799-A	0.22436	3E-8		0.0235823	[0.015-0.032] unit decrease	Illumina [13476599] (imputed)	N
1065	chr2	62953165	62953166	rs360799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2p15		rs360799-A	NR	9E-13		0.0381	[0.028-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1065	chr2	62955386	62955387	rs360801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p15		rs360801-G	NR	8E-15		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1065	chr2	62955386	62955387	rs360801	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p15	EHBP1	rs360801-G	0.649284	8E-7		1.04	[2.02-1.06]	NR [8126035] (imputed)	N
1065	chr2	62955386	62955387	rs360801	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2p15	NR	rs360801-A	0.6653	3E-14				Affymetrix, Illumina [at least 2500000] (imputed)	N
1065	chr2	62955386	62955387	rs360801	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p15	EHBP1	rs360801-A	0.6635	7E-10		0.0186	[0.013-0.024] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1065	chr2	62983212	62983213	rs12713468	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	2p15	EHBP1	rs12713468-?	NR	5E-8		0.02551	[0.016-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1065	chr2	62988168	62988169	rs4671050	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p15	EHBP1	rs4671050-G	0.683861	1E-18		0.0196869	[0.015-0.024] unit increase	Affymetrix [NR] (imputed)	N
1065	chr2	62988168	62988169	rs4671050	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p15	EHBP1	rs4671050-?	NR	1E-21		0.0262	[0.021-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
1065	chr2	63019086	63019087	rs115646634	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	2p15		rs115646634-?	NR	3E-7				Affymetrix [810906]	N
1065	chr2	63031921	63031922	rs79891622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p15		rs79891622-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1065	chr2	63032695	63032696	rs4671051	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p15	EHBP1	rs4671051-?	0.35719999999999996	8E-9		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
1066	chr2	63045987	63045988	rs4671452	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs4671452-G	0.1273	5E-8	(recessive)	3.4659958	[2.21735711954377-5.41776841978372]	Affymetrix, Illumina [6131010] (imputed)	N
1066	chr2	63047972	63047973	rs7562734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p15		rs7562734-C	NR	2E-15		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1066	chr2	63047972	63047973	rs7562734	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p15	EHBP1	rs7562734-G	0.6777	2E-19		0.0200701	[0.016-0.024] unit increase	Affymetrix [NR] (imputed)	N
1066	chr2	63053047	63053048	rs11688816	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p15	NR	rs11688816-G	NR	1E-8		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1066	chr2	63053047	63053048	rs11688816	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2p15	EHBP1	rs11688816-A	0.53	3E-8		0.014	[0.0081-0.0199] unit decrease	Illumina [6108953] (imputed)	N
1066	chr2	63053047	63053048	rs11688816	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p15	NR	rs11688816-A	0.472471026757999	4E-8		0.014876516	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1066	chr2	63053047	63053048	rs11688816	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p15	EHBP1	rs11688816-G	0.529	4E-7		0.015	[0.0091-0.0205] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1066	chr2	63053047	63053048	rs11688816	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p15	EHBP1	rs11688816-G	0.526	1E-6	(EA, women)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1066	chr2	63053047	63053048	rs11688816	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p15	EHBP1	rs11688816-G	0.525	2E-8	(EA)	0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1066	chr2	63081758	63081759	rs2080227	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2p15	AC007098.1	rs2080227-T	0.298602	5E-9		0.03593119	[0.024-0.048] unit decrease	Affymetrix [7288503] (imputed)	N
1066	chr2	63086522	63086523	rs78858847	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	2p15		rs78858847-?	NR	2E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
1066	chr2	63131730	63131731	rs721048	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2p15		rs721048-?	NR	6E-6		1.10006	[1.06-1.14]	NR [680312]	N
1066	chr2	63131730	63131731	rs721048	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p15	NR	rs721048-A	0.18	5E-22		1.1	[1.08-1.12]	Illumina [20370935] (imputed)	N
1066	chr2	63131730	63131731	rs721048	18264098	Gudmundsson J	2008-02-10	Nat Genet	Common sequence variants on 2p15 and Xp11.22 confer susceptibility to prostate cancer.	Prostate cancer	1,854 European ancestry cases, 21,372 European ancestry controls	8,239 European ancestry cases, 7,590 European ancestry controls	2p15	EHBP1	rs721048-A	0.19	8E-9		1.15	[1.10-1.21]	Illumina [310520]	N
1066	chr2	63149556	63149557	rs2710642	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p15	NR	rs2710642-G	NR	2E-9		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1066	chr2	63149556	63149557	rs2710642	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p15	NR	rs2710642-G	0.349	2E-8	(EA)	0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1066	chr2	63149556	63149557	rs2710642	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p15	NR	rs2710642-G	NR	3E-11		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1066	chr2	63149556	63149557	rs2710642	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p15	NR	rs2710642-G	0.349	1E-9	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1066	chr2	63149556	63149557	rs2710642	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2p15	EHBP1	rs2710642-A	0.619	2E-10	(Trans-ethnic initial)	0.0239	[0.016-0.031] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1066	chr2	63149556	63149557	rs2710642	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2p15	EHBP1	rs2710642-G	0.35	6E-9		0.024	[NR] unit decrease	NR [NR] (imputed)	N
1066	chr2	63166378	63166379	rs2710651	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2p15		rs2710651-?	NR	1E-8		0.0115892	[0.0076-0.0156] unit increase	NR [6912294] (imputed)	N
1066	chr2	63166378	63166379	rs2710651	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2p15		rs2710651-G	0.471877	6E-8		0.011	[0.0071-0.0149] unit increase	NR [7250403] (imputed)	N
1066	chr2	63170920	63170921	rs2302567	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs2302567-G	0.1266	3E-7	(recessive, female)	4.4884167	[2.52400771164207-7.98170461857251]	Affymetrix, Illumina [6131010] (imputed)	N
1067	chr2	63178110	63178111	rs2430386	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	2p15	NR	rs2430386-T	NR	1E-13		1.11	NR	Affymetrix [at least 232408] (imputed)	N
1067	chr2	63178110	63178111	rs2430386	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	2p15	EHBP1	rs2430386-T	0.5	9E-12		1.14	[1.10-1.18]	Illumina [1531807] (imputed)	N
1067	chr2	63199708	63199709	rs17408037	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p15	NR	rs17408037-G	0.164309	9E-9		0.0237295	[0.016-0.032] unit decrease	NR [19129689] (imputed)	N
1067	chr2	63202996	63202997	rs2710636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p15		rs2710636-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1067	chr2	63208459	63208460	rs2539980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p15		rs2539980-T	0.317891	4E-8		0.0238248	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63208459	63208460	rs2539980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	2p15		rs2539980-T	0.317891	3E-8		0.0236315	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63248967	63248968	rs2710644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p15		rs2710644-C	NR	1E-19		0.0212	[0.017-0.026] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	5E-8		0.0295835	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	2E-8		0.0304851	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	2E-8		0.030635	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	5E-8		0.0297106	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	4E-8		0.0294492	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	3E-8		0.0303303	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	2E-8		0.0303214	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	5E-8		0.0297762	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	2E-8		0.0307267	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63268354	63268355	rs12620918	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	2p15		rs12620918-T	0.826015	4E-8		0.0299356	[0.019-0.041] unit decrease	NR [11722792] (imputed)	N
1067	chr2	63269603	63269604	rs6739804	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2p15	NR	rs6739804-C	0.6796	4E-10		0.01627811	[0.011-0.021] unit decrease	Affymetrix [10613246] (imputed)	N
1067	chr2	63269603	63269604	rs6739804	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p15	NR	rs6739804-C	0.66	1E-11		0.012945168	[0.0092-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p15		rs58235267-G	NR	3E-21		0.1165	[0.092-0.141] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2p15	NR	rs58235267-G	0.487547337	3E-12		1.1305747	[1.09-1.17]	Affymetrix, Illumina [20400945] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p15	NR	rs58235267-G	NR	7E-62		1.119	[1.10-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p15	NR	rs58235267-G	0.691	3E-6		1.102	[1.06-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	2p15	NR	rs58235267-G	0.447	3E-8		1.122	[1.08-1.17]	Affymetrix, Illumina [18877980] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2p15		rs58235267-G	NR	5E-16		1.1275228	NR	Affymetrix [7846216] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2p15	EHBP1, OTX1	rs58235267-?	NR	1E-8		0.014048	[0.0092-0.0189] unit decrease	Affymetrix [25921788] (imputed)	N
1067	chr2	63277842	63277843	rs58235267	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	2p15	intergenic	rs58235267-?	0.471	6E-7	(conditional on Round 2 SNPs)	0.027	unit increase	Affymetrix [10109774] (imputed)	N
1067	chr2	63280689	63280690	rs2075375	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p15	OTX1	rs2075375-T	0.5784	1E-12		0.018538518	[0.013-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1067	chr2	63289733	63289734	rs13000344	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs13000344-G	0.1357	2E-7	(recessive, female)	4.336641	[2.48497848111492-7.56805424951364]	Affymetrix, Illumina [6131010] (imputed)	N
1067	chr2	63301163	63301164	rs6545977	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2p15		rs6545977-?	NR	3E-9		0.901944	[0.87-0.94]	NR [680312]	N
1067	chr2	63301163	63301164	rs6545977	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p15		rs6545977-A	0.4934	2E-8		0.0733171	[0.046-0.1] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1067	chr2	63301163	63301164	rs6545977	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	2p15	EHBP1, LOC100132215, OTX1, DBIL5P2, WDPCP	rs6545977-G	0.515963	4E-8		0.00400688	[0.0026-0.0054] unit increase	NR [NR] (imputed)	N
1067	chr2	63301163	63301164	rs6545977	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2p15	EHBP1	rs6545977-?	NR	5E-7				Illumina [541129]	N
1068	chr2	63320523	63320524	rs62180269	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p15	DBIL5P2	rs62180269-T	0.780939	1E-15		0.0195668	[0.015-0.024] unit decrease	NR [16516521] (imputed)	N
1068	chr2	63331775	63331776	rs79036893	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p15		rs79036893-T	0.784	5E-21		0.014	[0.012-0.016] unit increase	NR [NR] (imputed)	N
1068	chr2	63331775	63331776	rs79036893	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2p15	NR	rs79036893-A	0.214	7E-17		0.0149287	[0.011-0.018] unit increase	NR [9732723] (imputed)	N
1068	chr2	63353040	63353041	rs12618946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p15		rs12618946-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1068	chr2	63355519	63355520	rs10173115	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p15	WDPCP	rs10173115-A	0.46	2E-11		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1068	chr2	63357875	63357876	rs11125949	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p15	Intergenic	rs11125949-T	0.8113	3E-17	(MTAG)	0.0194	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1068	chr2	63363241	63363242	rs72813408	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	2p15	WDPCP	rs72813408-G	0.1909	3E-16		0.0239735	[0.017-0.031] unit increase	NR [9417325] (imputed)	N
1068	chr2	63374062	63374063	rs4671458	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2p15	NR	rs4671458-T	0.2039	2E-6		0.0153	[0.009-0.0216] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1068	chr2	63391339	63391340	rs17027651	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs17027651-G	0.1293	2E-7	(recessive)	3.2417068	[2.08364757561344-5.04339769105413]	Affymetrix, Illumina [6131010] (imputed)	N
1068	chr2	63392871	63392872	rs4671459	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p15	NR	rs4671459-C	0.194698933634269	5E-14		0.00874377	[0.0065-0.011] unit decrease	NR [NR]	N
1068	chr2	63392871	63392872	rs4671459	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p15	NR	rs4671459-C	0.194698933634269	1E-13		0.010720793	[0.0079-0.0136] unit decrease	NR [NR]	N
1068	chr2	63392871	63392872	rs4671459	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p15	NR	rs4671459-C	0.194698933634269	5E-14		0.013932857	[0.01-0.018] unit decrease	NR [NR]	N
1068	chr2	63392871	63392872	rs4671459	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p15	NR	rs4671459-C	0.194698933634269	5E-14		0.008897682	[0.0066-0.0112] unit decrease	NR [NR]	N
1068	chr2	63401819	63401820	rs61734468	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	2p15		rs61734468-?	NR	4E-10				IDT xGen Exome Sequencing Research Panel v1.0	N
1068	chr2	63416605	63416606	rs62180324	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p15	NR	rs62180324-A	0.212	2E-18		0.0115094	[0.0089-0.0141] unit decrease	NR [9732723] (imputed)	N
1068	chr2	63416605	63416606	rs62180324	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p15	NR	rs62180324-A	0.212	4E-10		0.019516665	[0.013-0.026] unit decrease	NR [~ 10000000] (imputed)	N
1068	chr2	63426407	63426407	rs201021681	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p15	NR	rs201021681-?	NR	4E-7		0.0515	[0.032-0.071] unit increase	Illumina [at least 560000] (imputed)	N
1068	chr2	63437481	63437482	rs2421822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p15	Intergenic	rs2421822-A	0.5958	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1068	chr2	63438832	63438833	rs13030879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p15	Intergenic	rs13030879-T	0.2502	5E-8	(MTAG)	0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1069	chr2	63447199	63447200	rs13417792	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	2p15	NR	rs13417792-?	NR	2E-7			[NR]	Illumina [5432814] (imputed)	N
1069	chr2	63454006	63454007	rs145957568	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	2p15	WDPCP	rs145957568-G	NR	1E-6		0.371	[0.22-0.52] unit decrease	Illumina [6319684] (imputed)	N
1069	chr2	63462519	63462520	rs62177792	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p15		rs62177792-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1069	chr2	63464878	63464879	rs1829526	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p15	NR	rs1829526-G	0.198003971291323	1E-11		0.011241955	[0.008-0.0145] unit decrease	NR [NR]	N
1069	chr2	63495405	63495406	rs13000175	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs13000175-A	0.134	1E-7	(recessive, female)	4.6954784	[2.64096399466053-8.34828392686182]	Affymetrix, Illumina [6131010] (imputed)	N
1069	chr2	63511434	63511435	rs2138798	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p15	WDPCP	rs2138798-A	0.217	8E-7	(Urinary free norepinephrine: creatinine)	0.03	[NR] unit increase	Illumina [899892]	N
1069	chr2	63512563	63512564	rs7609203	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p15	WDPCP	rs7609203-A	0.260993	9E-10	(20 ms)	0.0385093	[0.026-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1069	chr2	63512563	63512564	rs7609203	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p15	WDPCP	rs7609203-A	0.260993	2E-9	(14 ms)	0.0388315	[0.026-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1069	chr2	63512563	63512564	rs7609203	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p15	WDPCP	rs7609203-A	0.260993	2E-10	(18 ms)	0.0404421	[0.028-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1069	chr2	63512563	63512564	rs7609203	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p15	WDPCP	rs7609203-A	0.260993	1E-10	(16 ms)	0.0410768	[0.029-0.054] unit increase	Affymetrix [10000000] (imputed)	N
1069	chr2	63513190	63513191	rs76262922	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p15	Intergenic	rs76262922-G	0.8195	2E-18		0.0223	[0.017-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1069	chr2	63550549	63550550	rs775417095	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2p15	WDPCP	rs775417095-T	0.0012	6E-6		1.0868	[0.62-1.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1069	chr2	63558589	63558590	rs13021322	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p15	WDPCP	rs13021322-T	0.4296	3E-8		0.01317891	[0.0085-0.0179] unit decrease	Affymetrix [11515109] (imputed)	N
1070	chr2	63581506	63581507	rs13032049	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p15	NR	rs13032049-G	0.283	2E-13		0.0108326	[0.008-0.0137] unit increase	NR [~ 9732723] (imputed)	N
1070	chr2	63581506	63581507	rs13032049	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p15	NR	rs13032049-G	0.283	3E-10		0.01019455	[0.007-0.0134] unit increase	NR [~ 10000000] (imputed)	N
1070	chr2	63587154	63587155	rs148533396	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2p15	NR	rs148533396-C	0.981868	4E-6		0.218	[0.13-0.31] unit decrease	NR [9260588] (imputed)	N
1070	chr2	63596835	63596836	rs11683229	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p15	LOC51057	rs11683229-?	0.15	6E-6	(IL6)			Illumina [496032]	N
1070	chr2	63599529	63599530	rs72815377	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	2p15	NR	rs72815377-T	NR	4E-6		0.104	[0.061-0.147] unit increase	Illumina [6319684] (imputed)	N
1070	chr2	63622308	63622309	rs7559982	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	2p15	NR	rs7559982-A	0.564	2E-12		0.017	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1070	chr2	63627916	63627917	rs2138793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p15		rs2138793-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1070	chr2	63637090	63637091	rs4671503	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p15		rs4671503-A	0.29	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1070	chr2	63654108	63654109	rs13013890	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs13013890-A	0.1236	2E-9	(recessive)	3.6466174	[2.39123985688344-5.56105589831056]	Affymetrix, Illumina [6131010] (imputed)	N
1070	chr2	63658293	63658293	rs11405769	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p15	NR	rs11405769-?	NR	1E-7		0.0517	[0.033-0.071] unit decrease	Illumina [at least 560000] (imputed)	N
1070	chr2	63658293	63658293	rs11405769	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p15	WDPCP	rs11405769-?	NR	1E-7		1.0526316	[1.03-1.07]	Illumina [13754664] (imputed)	N
1070	chr2	63674059	63674060	rs6736411	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and attention deficit hyperactivity disorder	46,802 European ancestry asthma cases, 19,099 European ancestry attention deficit hyperactivity disorder cases, 381,675 European ancestry controls	NA	2p15	MDH1, WDPCP	rs6736411-?	NR	3E-8				Affymetrix [up to 8274727] (imputed)	N
1071	chr2	63777857	63777858	rs186133190	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	2p15	WDPCP	rs186133190-C	0.015	1E-6		0.44	[NR] unit increase	Affymetrix, Illumina [at least 1569314] (imputed)	N
1071	chr2	63788340	63788341	rs112028067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p15	NR	rs112028067-A	0.218119973911245	2E-11		0.009272882	[0.0066-0.012] unit decrease	NR [NR]	N
1071	chr2	63788340	63788341	rs112028067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p15	NR	rs112028067-A	0.218119973911245	1E-11		0.012065358	[0.0086-0.0156] unit decrease	NR [NR]	N
1071	chr2	63788340	63788341	rs112028067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p15	NR	rs112028067-A	0.218119973911245	1E-10		0.009862472	[0.0069-0.0129] unit decrease	NR [NR]	N
1071	chr2	63788340	63788341	rs112028067	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p15	NR	rs112028067-A	0.218119973911245	2E-11		0.007682492	[0.0054-0.0099] unit decrease	NR [NR]	N
1071	chr2	63788340	63788341	rs112028067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p15		rs112028067-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1071	chr2	63815205	63815206	rs1109027	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	2p15	WDPCP	rs1109027-A	NR	4E-8		0.009453	[0.0061-0.0128] unit decrease	Affymetrix [18485882] (imputed)	N
1072	chr2	63849011	63849012	rs35631693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p15		rs35631693-C	NR	5E-8		0.014	[0.0089-0.0191] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1072	chr2	63850097	63850098	rs12476592	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p15	NR	rs12476592-?	NR	3E-7		0.0571	[0.035-0.079] unit decrease	Illumina [at least 560000] (imputed)	N
1072	chr2	63853422	63853423	rs113419088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	2p15		rs113419088-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1072	chr2	63861785	63861786	rs262505	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MDH1	5,355 Icelandic ancestry individuals	NA	2p15		rs262505-C	0.3046	4E-12		0.138465	[0.099-0.178] unit increase	Illumina [7506463] (imputed)	N
1072	chr2	63878004	63878005	rs144528474	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p15	MDH1	rs144528474-A	0.9976	6E-9		0.12901536	[0.086-0.172] unit increase	Affymetrix [11514654] (imputed)	N
1072	chr2	63893588	63893589	rs17619012	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	2p15	WDPCP	rs17619012-G	0.2058	4E-13		0.019889101	[0.014-0.026] unit increase	NR [9417325] (imputed)	N
1072	chr2	63893588	63893589	rs17619012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p15		rs17619012-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1072	chr2	63893588	63893589	rs17619012	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2p15	OTX1	rs17619012-T	0.216843	2E-8		5.59	z score decrease	NR [10847151] (imputed)	N
1072	chr2	63901260	63901261	rs11684093	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs11684093-C	0.1599	2E-7	(recessive)	2.4741576	[1.75403702040239-3.48992414143641]	Affymetrix, Illumina [6131010] (imputed)	N
1072	chr2	63922368	63922369	rs10209140	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p15	MDH1	rs10209140-G	0.64953125	2E-8	(MDH1, 3853_56_1)	0.14797057	[0.096-0.2] unit increase	Illumina [> 1000000] (imputed)	N
1072	chr2	63932899	63932900	rs371708617	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p15		rs371708617-G	0.794	8E-13		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1072	chr2	63938755	63938756	rs139283528	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p15	NR	rs139283528-G	NR	2E-13		1.276	[1.20-1.36]	Affymetrix, Illumina [29235255] (imputed)	N
1073	chr2	64039566	64039567	rs13023873	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	2p15	NR	rs13023873-T	0.16	6E-7	(recessive)	2.3919287	[1.69873524390073-3.36798957140803]	Affymetrix, Illumina [6131010] (imputed)	N
1073	chr2	64092818	64092819	rs140144265	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2p15	UGP2	rs140144265-T	0.00232	5E-8		0.129	[0.083-0.175] unit decrease	Illumina [~ 250000] (imputed)	N
1074	chr2	64103740	64103741	rs4538187	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	2p15	UGP2	rs4538187-?	NR	6E-6	(Post-puberty)	0.102	[0.057-0.147] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1074	chr2	64204001	64204002	rs13014029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p14	Intergenic	rs13014029-A	0.3869	7E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1074	chr2	64207444	64207445	rs6546043	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	2p14	UGP2, VPS54	rs6546043-A	0.7116	7E-6		2.079	[1.76-2.40]	Illumina [8809853] (imputed)	N
1074	chr2	64217785	64217786	rs13014371	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2p14	VPS54	rs13014371-T	0.5705	2E-11		0.1176	[0.083-0.152] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1075	chr2	64267897	64267898	rs66993685	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2p14	NR	rs66993685-A	0.230761639407359	7E-11		0.008771214	[0.0061-0.0114] unit decrease	NR [NR]	N
1075	chr2	64267897	64267898	rs66993685	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p14	NR	rs66993685-A	0.230761639407359	5E-11		0.011433163	[0.008-0.0148] unit decrease	NR [NR]	N
1075	chr2	64267897	64267898	rs66993685	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2p14	NR	rs66993685-A	0.230761639407359	2E-10		0.009335231	[0.0064-0.0122] unit decrease	NR [NR]	N
1075	chr2	64267897	64267898	rs66993685	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p14	NR	rs66993685-A	0.230761639407359	6E-11		0.007285831	[0.0051-0.0095] unit decrease	NR [NR]	N
1075	chr2	64267993	64267994	rs72808287	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p14	NR	rs72808287-T	0.230411656529276	5E-11		0.0071636746	[0.005-0.0093] unit decrease	NR [NR]	N
1075	chr2	64296597	64296598	rs13395129	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p14	NR	rs13395129-C	NR	2E-8		5.628	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1075	chr2	64306983	64306984	rs2576835	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p14	NR	rs2576835-A	NR	1E-9		6.055	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1075	chr2	64349201	64349202	rs7604693	21221998	Kim JJ	2011-01-09	Hum Genet	A genome-wide association analysis reveals 1p31 and 2p13.3 as susceptibility loci for Kawasaki disease.	Kawasaki disease	186 Korean ancestry child cases, 600 Korean ancestry controls	514 East Asian ancestry child cases, 1,042 East Asian ancestry controls	2p14	PELI1	rs7604693-G	0.05	2E-6	(CAL)	2.7	[1.77-4.12]	Affymetrix [641760]	N
1076	chr2	64364631	64364632	rs6733160	23921680	Kim DS	2013-07-31	Int Arch Allergy Immunol	A genome-wide association study in Koreans identifies susceptibility loci for allergic nickel dermatitis.	Allergic dermatitis (nickel)	up to 24 Korean ancestry cases, 52 Korean ancestry controls	NA	2p14	PELI1	rs6733160-C	NR	7E-6	(2-fold positive reaction cases)	9.276	[NR]	Affymetrix [NR]	N
1076	chr2	64374040	64374041	rs6712700	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p14		rs6712700-?	NR	2E-8				NR [NR]	N
1076	chr2	64374040	64374041	rs6712700	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p14		rs6712700-?	NR	2E-8				NR [NR]	N
1076	chr2	64381258	64381259	rs6722750	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2p14		rs6722750-?	NR	8E-9				NR [NR]	N
1076	chr2	64381258	64381259	rs6722750	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2p14	NR	rs6722750-T	0.554	4E-6		0.015867988	[0.0091-0.0226] unit increase	Affymetrix [up to 6544775] (imputed)	N
1076	chr2	64408775	64408776	rs35899183	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2p14	NR	rs35899183-C	0.45328	2E-9		0.042646825	[0.029-0.057] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1076	chr2	64445562	64445563	rs1898445	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	2p14		rs1898445-C	0.03	8E-6		1.32	unit increase	Affymetrix [NR] (imputed)	N
1077	chr2	64495626	64495627	rs1529102	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2p14	RPL23AP37, LOC100128607	rs1529102-A	0.495	6E-6		0.07	[0.041-0.099] cup size increase	Illumina [7422970] (imputed)	N
1077	chr2	64503894	64503895	rs2698530	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	intergenic	rs2698530-C	NR	4E-6	(Transferrin saturation)	20.0	[NR] unit decrease	Illumina [331060]	N
1077	chr2	64503894	64503895	rs2698530	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	intergenic	rs2698530-C	NR	2E-7	(Total iron-binding capacity)	20.72	[NR] ug/dL increase	Illumina [331060]	N
1077	chr2	64503894	64503895	rs2698530	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	2p14	intergenic	rs2698530-C	NR	1E-7	(Unsaturated iron-binding capacity)	28.75	[NR] ug/dL increase	Illumina [331060]	N
1077	chr2	64509482	64509483	rs67968328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p14		rs67968328-T	NR	7E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1077	chr2	64509482	64509483	rs67968328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs67968328-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1077	chr2	64514076	64514077	rs79725587	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p14	NR	rs79725587-?	NR	9E-13	(Ep-CAM)	1.46532	[1.06-1.87] unit increase	Illumina [11901634] (imputed)	N
1077	chr2	64529389	64529390	rs76729733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p14	Intergenic	rs76729733-A	0.0432	2E-10	(MTAG)	0.0282	[0.02-0.037] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1077	chr2	64529389	64529390	rs76729733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p14	Intergenic	rs76729733-G	0.9568	1E-10		0.0308	[0.021-0.04] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1077	chr2	64529389	64529390	rs76729733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p14	Intergenic	rs76729733-A	0.0433	3E-9	(MTAG)	0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1077	chr2	64529389	64529390	rs76729733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p14	Intergenic	rs76729733-G	0.9567	8E-9		0.0321	[0.021-0.043] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1077	chr2	64530393	64530394	rs6748843	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	2p14	PELI1, LOC130773	rs6748843-?	0.47	2E-7		18.01	unit increase	Illumina [120975] (imputed)	N
1077	chr2	64563170	64563171	rs1426703	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p14	NR	rs1426703-?		6E-6				Illumina [4322238] (imputed)	N
1078	chr2	64681021	64681022	rs13402603	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p14	NR	rs13402603-C	0.145	5E-7	(IFNalpha_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1078	chr2	64720471	64720472	rs72812078	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p14	NR	rs72812078-?	NR	6E-12	(Ep-CAM)	1.33295	[0.95-1.71] unit increase	Illumina [11901634] (imputed)	N
1078	chr2	64732144	64732145	rs56081657	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Odoribacter id.952)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2p14		rs56081657-A	NR	1E-8		5.703667	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1079	chr2	64836266	64836267	rs4671601	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2p14	LOC339807	rs4671601-C	0.83	9E-9		1.039	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1079	chr2	64843941	64843942	rs58856182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2p14		rs58856182-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1079	chr2	64849036	64849037	rs192707516	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p14	NR	rs192707516-?	NR	1E-12	(Ep-CAM)	1.44994	[1.05-1.85] unit increase	Illumina [11901634] (imputed)	N
1079	chr2	64849928	64849929	rs12713522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p14		rs12713522-T	NR	9E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1079	chr2	64860029	64860035	rs140625215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p14	SERTAD2	rs140625215-C	0.334485	5E-54		0.036871172	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1079	chr2	64860029	64860035	rs140625215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p14	SERTAD2	rs140625215-C	0.334522	8E-12		0.016162999	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1079	chr2	64860029	64860035	rs140625215	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p14	SERTAD2	rs140625215-C	NR	7E-13		0.0292387	[0.021-0.038] unit increase	Affymetrix [16832071] (imputed)	N
1079	chr2	64860029	64860035	rs140625215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2p14	SERTAD2	rs140625215-C	0.3373	3E-18		0.03312166	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1079	chr2	64861511	64861512	rs3832127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p14	SERTAD2	rs3832127-T	0.362549	6E-10		0.014599576	[0.01-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
1079	chr2	64861511	64861512	rs3832127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p14	SERTAD2	rs3832127-T	0.36256	3E-13		0.017277127	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1079	chr2	64861511	64861512	rs3832127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p14	SERTAD2	rs3832127-T	0.3625	2E-15		0.018996224	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1079	chr2	64865803	64865804	rs11688492	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p14	SERTAD2	rs11688492-T	0.54226	3E-12		0.0129096	[0.0093-0.0165] unit increase	NR [13737936] (imputed)	N
1079	chr2	64865803	64865804	rs11688492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p14		rs11688492-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1079	chr2	64865803	64865804	rs11688492	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p14		rs11688492-?	NR	1E-10		0.0117076	[0.0076-0.0158] unit increase	Affymetrix [20259828] (imputed)	N
1079	chr2	64870073	64870073	rs3836061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p14	SERTAD2	rs3836061-CTGTT	0.894734	1E-12		0.0352408	[0.028-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1079	chr2	64870073	64870073	rs3836061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p14	SERTAD2	rs3836061-CTGTT	0.89475	1E-16		0.031997785	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1079	chr2	64870720	64870721	rs5025949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs5025949-G	0.909844	8E-36				Affymetrix, Illumina [20825802] (imputed)	N
1079	chr2	64870888	64870889	rs2422276	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2p14		rs2422276-A	0.543684	3E-9		0.051279	[0.033-0.069] increase	Affymetrix [11014269] (imputed)	N
1079	chr2	64870888	64870889	rs2422276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p14	SERTAD2	rs2422276-G	0.455684	6E-11		0.01473547	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1079	chr2	64870888	64870889	rs2422276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p14	SERTAD2	rs2422276-G	0.45568	2E-13		0.020324	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1079	chr2	64877838	64877839	rs2422277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs2422277-G	0.907774	4E-35				Affymetrix, Illumina [24246363] (imputed)	N
1079	chr2	64877838	64877839	rs2422277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p14	NR	rs2422277-G	0.908025	1E-29		0.035597	[0.029-0.042] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1079	chr2	64877838	64877839	rs2422277	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p14	NR	rs2422277-G	0.908877	2E-31		0.039086	[0.033-0.046] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1079	chr2	64878692	64878693	rs3770710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p14	NR	rs3770710-A	NR	2E-22		0.0336	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr2	64881228	64881229	rs2302643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs2302643-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1080	chr2	64881705	64881706	rs140066983	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SERTAD2	rs140066983-?	NR	9E-10	(female)	1.57817	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1080	chr2	64881705	64881706	rs140066983	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SERTAD2	rs140066983-?	NR	2E-9		1.93478	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2p14		rs3755189-A	NR	7E-11		0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p14	SERTAD2	rs3755189-A	0.446263	4E-15		0.018537693	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs3755189-A	0.442498	9E-17				Affymetrix, Illumina [24332387] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p14	NR	rs3755189-A	0.445768	1E-16		0.015558	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p14		rs3755189-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1080	chr2	64881996	64881997	rs3755189	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	2p14	NR	rs3755189-A	0.45	2E-7		0.021	[0.013-0.029] unit decrease	Affymetrix [27624732] (imputed)	N
1080	chr2	64882413	64882414	rs12466865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs12466865-C	0.643644	1E-42				Affymetrix, Illumina [22063850] (imputed)	N
1080	chr2	64882413	64882414	rs12466865	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2p14	SERTAD2	rs12466865-C	0.639	8E-12		0.037	[0.027-0.047] unit decrease	Affymetrix [~ 9000000] (imputed)	N
1080	chr2	64882413	64882414	rs12466865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p14		rs12466865-?	NR	2E-49				NR [~ 8900000] (imputed)	N
1080	chr2	64893182	64893183	rs12614829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p14	NR	rs12614829-T	0.20748999999999995	6E-17		0.0302107	[0.023-0.038] unit increase	Affymetrix [16577313] (imputed)	N
1080	chr2	64902287	64902288	rs10165929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p14		rs10165929-C	NR	3E-14		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1080	chr2	64902287	64902288	rs10165929	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p14		rs10165929-C	NR	5E-21		0.0239	[0.019-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1080	chr2	64905181	64905182	rs34532102	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p14	SERTAD2	rs34532102-?	0.2017	1E-8		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p14		rs6546096-G	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p14	SERTAD2	rs6546096-G	0.737487	5E-9		0.0150157325	[0.01-0.0201] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs6546096-G	0.776879	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p14	NR	rs6546096-A	0.26245	3E-110		0.0205091	[0.019-0.022] unit increase	Affymetrix [16582909] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p14	NR	rs6546096-A	0.262505	4E-76		0.0251993	[0.022-0.028] unit increase	Affymetrix [16585854] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p14	NR	rs6546096-A	0.26245	9E-97		0.0214141	[0.019-0.023] unit increase	Affymetrix [16582965] (imputed)	N
1080	chr2	64906294	64906295	rs6546096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p14	NR	rs6546096-A	0.262505	4E-67		0.0276002	[0.024-0.031] unit increase	Affymetrix [16585866] (imputed)	N
1080	chr2	64906752	64906752	rs3832126	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2p14	NR	rs3832126-CT	0.725946	6E-14		0.0169961	[0.013-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1080	chr2	64906752	64906752	rs3832126	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2p14	NR	rs3832126-CT	0.725851	4E-29		0.0322304	[0.027-0.038] unit increase	Affymetrix [16585745] (imputed)	N
1080	chr2	64906799	64906800	rs1861398	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2p14	SERTAD2	rs1861398-?	NR	8E-9		0.0167	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1080	chr2	64907677	64907677	rs10657979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p14		rs10657979-CCTT	NR	3E-20		0.0232	[0.018-0.028] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1080	chr2	64907677	64907677	rs10657979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p14		rs10657979-CCTT	NR	1E-25		0.0263	[0.021-0.031] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1080	chr2	64907677	64907677	rs10657979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p14	NR	rs10657979-C	0.26415	6E-39		0.0160617	[0.013-0.019] unit increase	Affymetrix [16582621] (imputed)	N
1080	chr2	64907677	64907677	rs10657979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p14	NR	rs10657979-C	0.26415	4E-33		0.015647	[0.013-0.018] unit increase	Affymetrix [16582614] (imputed)	N
1080	chr2	64908032	64908033	rs11691369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p14	NR	rs11691369-C	0.737247	7E-13		0.01496	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1080	chr2	64909165	64909166	rs2160348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p14		rs2160348-C	NR	3E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1080	chr2	64909165	64909166	rs2160348	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p14	SERTAD2	rs2160348-T	0.264679	1E-31		0.00705827	[0.0059-0.0082] unit decrease	Affymetrix [13995440] (imputed)	N
1080	chr2	64909165	64909166	rs2160348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p14		rs2160348-?	NR	3E-29				NR [~ 8900000] (imputed)	N
1080	chr2	64916180	64916181	rs4671103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p14		rs4671103-C	NR	2E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1080	chr2	64916180	64916181	rs4671103	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p14	SERTAD2	rs4671103-A	0.300428	2E-11		0.00161431	[0.0011-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1080	chr2	64918069	64918070	rs3796051	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p14	SERTAD2	rs3796051-T	0.4677	9E-10		0.02220913	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr2	64918175	64918176	rs76845503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p14	NR	rs76845503-C	NR	2E-9		0.0484	[0.033-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1080	chr2	64920031	64920032	rs6750285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p14	SERTAD2	rs6750285-A	0.244267	2E-18		0.022540987	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr2	64923310	64923311	rs13013483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p14	SERTAD2	rs13013483-T	0.247631	2E-11		0.017283337	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1080	chr2	64923807	64923808	rs1477034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2p14		rs1477034-T	0.927634	3E-8		0.0390207	[0.025-0.053] unit decrease	Illumina [13476299] (imputed)	N
1080	chr2	64924036	64924037	rs1861408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2p14		rs1861408-T	0.92765	1E-9		0.0422298	[0.029-0.056] unit decrease	Illumina [13476266] (imputed)	N
1080	chr2	64928602	64928603	rs12471768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2p14		rs12471768-C	NR	2E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1080	chr2	64928602	64928603	rs12471768	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2p14	SERTAD2	rs12471768-T	0.295881	3E-9		0.0136102	[0.0091-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
1080	chr2	64928602	64928603	rs12471768	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2p14	SERTAD2	rs12471768-T	0.295959	9E-10		0.0139182	[0.0095-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
1080	chr2	64928602	64928603	rs12471768	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2p14	SERTAD2, LOC101927438	rs12471768-?	NR	3E-8		0.04656	[0.03-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1080	chr2	64940339	64940340	rs35827863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p14		rs35827863-T	NR	1E-9		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1080	chr2	64950794	64950795	rs6753848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p14	SERTAD2	rs6753848-T	0.671832	1E-9		0.015114788	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1080	chr2	64950794	64950795	rs6753848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p14	SERTAD2	rs6753848-T	0.6716	5E-11		0.02465629	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr2	64950794	64950795	rs6753848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p14	SERTAD2	rs6753848-T	0.6716	3E-13		0.02740363	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1080	chr2	64965514	64965515	rs75879690	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p14	SERTAD2	rs75879690-C	NR	1E-7		0.15022114	[0.092-0.209] unit decrease	Illumina [> 6200000] (imputed)	N
1080	chr2	65009645	65009646	rs7579416	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p14	AFTPH	rs7579416-?	NR	3E-6	(CE 22:6)	0.20323053	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1081	chr2	65014113	65014114	rs145087630	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	2p14	NR	rs145087630-G		6E-6		0.4642	[0.26-0.67] SD units decrease	NR [10700000] (imputed)	N
1081	chr2	65026124	65026125	rs10168452	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p14	NR	rs10168452-?	NR	4E-8				Illumina [7760689] (imputed)	N
1081	chr2	65027623	65027624	rs11683197	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p14	SERTAD2	rs11683197-T	0.72	5E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1081	chr2	65039699	65039700	rs76108553	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	2p14		rs76108553-?	NR	1E-6		0.05	[-0.07--0.03] unit decrease	Illumina [7066534] (imputed)	N
1081	chr2	65039699	65039700	rs76108553	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,212 White ancestry individuals	NA	2p14		rs76108553-?	NR	9E-7		0.05	[-0.07--0.03] unit decrease	Illumina [7066544] (imputed)	N
1081	chr2	65043655	65043656	rs62137339	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2p14	NR	rs62137339-T	NR	5E-12		0.0336	[0.024-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1081	chr2	65045530	65045531	rs184989294	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p14	NR	rs184989294-?	NR	4E-12	(Ep-CAM)	1.49637	[1.07-1.92] unit increase	Illumina [11901634] (imputed)	N
1081	chr2	65049852	65049853	rs999944	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2p14	Intergenic	rs999944-G		1E-6		0.072	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1081	chr2	65049852	65049853	rs999944	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	2p14	intergenic	rs999944-A	0.112	2E-7	(Hispanic)	0.104	[0.065-0.143] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1081	chr2	65049852	65049853	rs999944	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (apnea hypopnea index)	12,558 Hispanic/Latin American individuals	214 Asian ancestry individuals, 1,183 African American individuals, 5,638 European ancestry individuals	2p14	intergenic	rs999944-A	0.112	1E-6		0.072	[0.043-0.101] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1081	chr2	65072209	65072210	rs111976243	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,293 White ancestry individuals, 189 Black individuals, 194 Asian ancestry individuals, 29 Native American ancestry individuals, 145 individuals	NA	2p14		rs111976243-?	NR	2E-6		0.05	[-0.07--0.03] unit decrease	Illumina [7066534] (imputed)	N
1081	chr2	65072209	65072210	rs111976243	34197840	Mehrotra R	2021-06-28	Kidney Int	A genome-wide association study suggests correlations of common genetic variants with peritoneal solute transfer rates in patients with kidney failure receiving peritoneal dialysis.	Peritoneal solute transfer rates in kidney failure treated with peritoneal dialysis	2,212 White ancestry individuals	NA	2p14		rs111976243-?	NR	2E-6		0.05	[-0.07--0.03] unit decrease	Illumina [7066544] (imputed)	N
1081	chr2	65087231	65087232	rs79709502	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p14	AC007880.1	rs79709502-G	0.221637	1E-10		0.01736473	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1081	chr2	65090665	65090666	rs74561456	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p14	NR	rs74561456-T	0.01394	4E-9	(CALR)	1.186	NR unit increase	Illumina [1671387] (imputed)	N
1081	chr2	65094496	65094497	rs759664	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	SERTAD2	rs759664-G	0.273962	5E-8	(372 ms)	0.0344408	[0.022-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1081	chr2	65094496	65094497	rs759664	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	SERTAD2	rs759664-G	0.273962	4E-8	(370 ms)	0.0345486	[0.022-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1081	chr2	65094496	65094497	rs759664	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	SERTAD2	rs759664-G	0.273962	4E-8	(368 ms)	0.0345834	[0.022-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1081	chr2	65094496	65094497	rs759664	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	SERTAD2	rs759664-G	0.273962	2E-8	(374 ms)	0.0353491	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1081	chr2	65104446	65104447	rs145162854	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2p14	SERTAD2, SLC1A4	rs145162854-?	NR	7E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1082	chr2	65208073	65208074	rs10211524	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2p14	SLC1A4	rs10211524-A	0.41	5E-20	(Valine)	0.09	[0.07-0.11] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1082	chr2	65208073	65208074	rs10211524	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p14	SLC1A4	rs10211524-A	0.42	6E-16	(2-aminobutyrate)	0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1082	chr2	65208073	65208074	rs10211524	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	2p14	SLC1A4	rs10211524-?	0.39	3E-10				Illumina [~ 2000000] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	2p14		rs2160387-T	0.572212	4E-28		0.0452213	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	2p14	SLC1A4	rs2160387-C	0.441	4E-9			NR	Illumina [7289516] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	2p14	SLC1A4	rs2160387-C	0.441	6E-9		0.72	[0.65-0.81]	Illumina [7289516] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p14	SLC1A4	rs2160387-T	0.428299	1E-18	(2-aminobutyrate)	0.204	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p14	SLC1A4	rs2160387-T	0.428299	1E-13	(gamma-glutamyl-2-aminobutyrate)	0.172	[0.13-0.22] unit decrease	Illumina [13039987] (imputed)	N
1082	chr2	65220909	65220910	rs2160387	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	2p14	SLC1A4	rs2160387-?	NR	3E-22	(Ala, Val)	0.17	[0.13-0.21] unit decrease	Illumina [~ 7700000] (imputed)	N
1082	chr2	65225088	65225088	rs72538440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	2p14		rs72538440-G	0.575952	6E-56		0.0645082	[0.056-0.073] unit decrease	NR [11722792] (imputed)	N
1082	chr2	65225088	65225088	rs72538440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	2p14		rs72538440-G	0.575953	1E-30		0.0469431	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
1082	chr2	65225088	65225088	rs72538440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	2p14		rs72538440-G	0.575926	2E-11		0.0270867	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1082	chr2	65225088	65225088	rs72538440	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	2p14		rs72538440-G	0.575926	5E-9		0.0242404	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1082	chr2	65231805	65231806	rs2422358	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial valine	4,348 individuals	NA	2p14		rs2422358-T	0.438107176	5E-9		0.136207	[0.091-0.182] mmol/l increase	Illumina [7701709] (imputed)	N
1082	chr2	65238406	65238407	rs6546120	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in systole	19,586 Japanese ancestry individuals	NA	2p14	SLC1A4	rs6546120-?	NR	5E-8		0.1967	[0.13-0.27] unit decrease	Illumina [6108953] (imputed)	N
1082	chr2	65238406	65238407	rs6546120	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Fractional shortening	19,580 Japanese ancestry individuals	NA	2p14	SLC1A4	rs6546120-?	NR	2E-8		0.2032	[0.13-0.27] unit increase	Illumina [6108953] (imputed)	N
1082	chr2	65238406	65238407	rs6546120	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Ejection fraction	19,516 Japanese ancestry individuals	NA	2p14	SLC1A4	rs6546120-?	NR	3E-8		0.2007	[0.13-0.27] unit increase	Illumina [6108953] (imputed)	N
1082	chr2	65264849	65264850	rs78144564	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p14	NR	rs78144564-A	NR	3E-7	(GEE model)	0.92865	[0.57-1.29] unit decrease	NR [NR] (imputed)	N
1082	chr2	65266837	65266838	rs34443138	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Arrhythmia	17,861 Japanese ancestry cases, 194,592 Japanese ancestry controls	NA	2p14		rs34443138-T	0.346347509	1E-9		0.9228044	[0.899182725-0.947046693]	Illumina [8919992] (imputed)	N
1082	chr2	65272361	65272362	rs2540953	28416822	Low SK	2017-04-17	Nat Genet	Identification of six new genetic loci associated with atrial fibrillation in the Japanese population.	Atrial fibrillation	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls	3,120 Japanese ancestry cases, 125,064 Japanese ancestry controls, 15,993 European ancestry cases, 113,719 European ancestry controls	2p14	SLC1A4, CEP68	rs2540953-G	0.65	3E-17		1.094	[1.071-1.117]	Illumina [5018049] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p14	NR	rs1009360-C	0.417095	5E-13		0.016374001	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p14	CEP68	rs1009360-T	0.581411	3E-20		0.0185443	[0.015-0.022] unit increase	Affymetrix [NR] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p14	NR	rs1009360-C	0.41606699999999996	2E-9		0.0179414	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2p14	CEP68	rs1009360-C	0.415241	5E-11		0.0435887	[0.031-0.056] unit decrease	Affymetrix [9463307] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs1009360-T	NR	3E-13		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs1009360-T	0.565	6E-10	(EA)	0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs1009360-T	NR	3E-7		0.018	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65276048	65276049	rs1009360	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs1009360-T	0.565	6E-6	(EA)	0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65276451	65276452	rs1009358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2p14		rs1009358-C	NR	4E-16		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1083	chr2	65276451	65276452	rs1009358	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2p14	CEP68	rs1009358-?		8E-9				Illumina [5041948] (imputed)	N
1083	chr2	65276451	65276452	rs1009358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p14		rs1009358-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1083	chr2	65276451	65276452	rs1009358	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2p14	CEP68	rs1009358-C	0.377278111777916	1E-11		0.0545	[0.039-0.07] unit decrease	NR [5035015] (imputed)	N
1083	chr2	65276735	65276736	rs2540951	33990960	Hong M	2021-05-14	Eur J Clin Invest	Ethnic similarities in genetic polymorphisms associated with atrial fibrillation: Far East Asian vs European populations.	Atrial fibrillation	9,118 East Asian ancestry cases, 33,467 East Asian ancestry controls	NA	2p14	CEP68	rs2540951-A	NR	5E-14		1.18	[1.13-1.23]	NR [2286360] (imputed)	N
1083	chr2	65276735	65276736	rs2540951	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p14	CEP68	rs2540951-A	0.623749	2E-9		0.012111	[0.0082-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
1083	chr2	65277366	65277370	rs10605604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p14		rs10605604-C	NR	2E-24		0.0194	[0.016-0.023] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1083	chr2	65277950	65277951	rs2723067	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2p14	RAB1A	rs2723067-?	NR	1E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1083	chr2	65279222	65279223	rs2540950	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p14	SLC1A4, CEP68	rs2540950-C		9E-7		0.193	unit increase	Affymetrix [at least 2696785] (imputed)	N
1083	chr2	65279222	65279223	rs2540950	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p14	SLC1A4, CEP68	rs2540950-C		6E-11		0.172	unit increase	Affymetrix [at least 2696785] (imputed)	N
1083	chr2	65279413	65279414	rs2723065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2p14		rs2723065-G	NR	5E-10		0.0408	[0.028-0.054] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1083	chr2	65279413	65279414	rs2723065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p14		rs2723065-G	NR	3E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1083	chr2	65279413	65279414	rs2723065	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p14	NR	rs2723065-G	0.3817	7E-28		0.0422	[0.035-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1083	chr2	65279413	65279414	rs2723065	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p14	CEP68	rs2723065-A	0.623227	3E-14		0.0149555	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1083	chr2	65279413	65279414	rs2723065	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p14	NR	rs2723065-G	0.37495199999999995	1E-14		0.0105151	[0.0079-0.0131] unit increase	Affymetrix [16578495] (imputed)	N
1083	chr2	65279804	65279805	rs2723064	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p14	CEP68	rs2723064-T	0.62	8E-20	(EA)	1.07	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1083	chr2	65279804	65279805	rs2723064	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	2p14	CEP68	rs2723064-T	0.61	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1083	chr2	65280184	65280185	rs2723063	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	2p14	AC007386.4	rs2723063-G	0.411067	3E-8		0.06565427	[0.043-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
1083	chr2	65282707	65282708	rs6728523	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p14	intergenic	rs6728523-C	0.2803	2E-15		0.0239	[0.018-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1083	chr2	65283971	65283972	rs74181299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2p14		rs74181299-C	NR	5E-15		0.0757	[0.057-0.095] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1083	chr2	65283971	65283972	rs74181299	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p14	CEP68	rs74181299-C	0.5797	6E-20		0.23	[0.18-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1083	chr2	65283971	65283972	rs74181299	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p14	CEP68	rs74181299-T	0.62	1E-12		0.23	[0.17-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1083	chr2	65284156	65284156	rs111524356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2p14		rs111524356-CGTGGATGCAGCA	NR	2E-17		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1083	chr2	65284156	65284156	rs111524356	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p14	CEP68	rs111524356-CGTGGATGCAGCA	0.4195	4E-12		0.2332	[0.17-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1083	chr2	65284156	65284156	rs111524356	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p14	CEP68	rs111524356-?	0.5634	1E-19		0.025	[0.02-0.03] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1083	chr2	65284230	65284231	rs2540949	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p14	NR	rs2540949-T	0.3842	9E-26		0.0496	[0.04-0.059] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1083	chr2	65284230	65284231	rs2540949	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2p14	CEP68	rs2540949-A	0.615	3E-22		1.07	[1.05-1.08]	Illumina [34740186] (imputed)	N
1083	chr2	65284230	65284231	rs2540949	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p14	CEP68	rs2540949-A	0.62	8E-25		1.08	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1083	chr2	65284230	65284231	rs2540949	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls, 641 African American cases, 5,234 African American controls, 837 Japanese ancestry cases, 3,293 Japanese controls, 277 Hispanic cases, 3,081 Hispanic controls,197 Brazilian ancestry cases, 758 Brazilian ancestry controls.	8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls.	2p14	CEP68	rs2540949-A	0.61	3E-10		1.08	[1.06-1.13]	Affymetrix, Illumina [11795432] (imputed)	N
1083	chr2	65284622	65284623	rs2540948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs2540948-T	NR	1E-10		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65284622	65284623	rs2540948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs2540948-T	0.635	3E-8	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65284622	65284623	rs2540948	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs2540948-T	NR	8E-6		0.016	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1083	chr2	65284622	65284623	rs2540948	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	2p14	CEP68	rs2540948-C	0.35	7E-9		0.036	[0.024-0.048] s.d. decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1083	chr2	65287364	65287364	rs71394917	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p14	NR	rs71394917-AT	0.36167499999999997	4E-12		0.00587084	[0.0042-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1083	chr2	65287364	65287364	rs71394917	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p14	NR	rs71394917-AT	0.36167499999999997	5E-11		0.0063206	[0.0044-0.0082] unit increase	Affymetrix [16582965] (imputed)	N
1083	chr2	65287895	65287896	rs2249105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p14		rs2249105-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1083	chr2	65287895	65287896	rs2249105	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p14	CEP68	rs2249105-A	0.6343	2E-14		1.1	[1.08-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1083	chr2	65287895	65287896	rs2249105	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	2p14	CEP68	rs2249105-?	NR	1E-8				NR [1800000]	N
1083	chr2	65289824	65289825	rs2540945	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p14	NR	rs2540945-G	0.36262399999999995	8E-9		0.0175945	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1083	chr2	65291545	65291546	rs2241160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p14		rs2241160-G	NR	4E-8		0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1083	chr2	65296279	65296280	rs2252867	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2p14	CEP68	rs2252867-C	0.361669	5E-8		0.034094475	[0.022-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
1083	chr2	65296797	65296798	rs7572857	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p14	CEP68	rs7572857-G	0.833	6E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
1083	chr2	65296797	65296798	rs7572857	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p14	CEP68	rs7572857-G	0.846	7E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
1083	chr2	65296797	65296798	rs7572857	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	2p14	CEP68	rs7572857-G	0.833	8E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
1083	chr2	65296797	65296798	rs7572857	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	2p14	CEP68	rs7572857-G	0.846	8E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [247470]	N
1083	chr2	65309877	65309878	rs112961707	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA9475 sp002161675 abundance in stool	5,959 Finnish ancestry individuals	NA	2p14		rs112961707-G	0.0323124	2E-8		0.0926206	[0.06-0.125] unit increase	Illumina [7980478] (imputed)	N
1083	chr2	65313215	65313215	rs3052195	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p14	CEP68	rs3052195-CAG	0.747094	1E-15		0.020656968	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr2	65346974	65346974	rs201667812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p14	RAB1A	rs201667812-AC	0.665285	8E-12		0.016216129	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr2	65352198	65352198	rs66712908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p14	RAB1A	rs66712908-CAA	0.620483	2E-9		0.013926121	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1083	chr2	65355269	65355270	rs2052261	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p14	CEP68	rs2052261-G	0.3038	3E-6		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1083	chr2	65367425	65367426	rs182928794	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p14	Intergenic	rs182928794-T	NR	8E-7	(between families)	4.927	unit increase	Affymetrix [up to 15107142] (imputed)	N
1083	chr2	65387898	65387899	rs2422442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p14	SNORA74	rs2422442-A	0.704976	3E-9		0.015235241	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1083	chr2	65387898	65387899	rs2422442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs2422442-A	0.707316	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
1083	chr2	65387898	65387899	rs2422442	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p14	NR	rs2422442-A	0.704428	3E-13		0.016469	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1083	chr2	65394713	65394714	rs11681377	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	2p14	Intergenic	rs11681377-T	0.47	6E-6		1.15	[1.08-1.22]	Illumina [92772]	N
1084	chr2	65408001	65408002	rs2422468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p14		rs2422468-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1084	chr2	65423673	65423674	rs149335852	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p14	Intergenic	rs149335852-T	0.959	4E-6	(AA)	0.302	NR unit increase	Illumina [NR] (imputed)	N
1084	chr2	65486927	65486928	rs6715876	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	2p14	ACTR2	rs6715876-C	0.361	1E-6		1.14	[1.09-1.19]	Affymetrix, Illumina [8000000] (imputed)	N
1084	chr2	65496057	65496058	rs17038564	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	2p14	NR	rs17038564-G	NR	2E-8		0.87	[0.83-0.91]	NR [NR] (imputed)	N
1084	chr2	65496057	65496058	rs17038564	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	2p14	NR	rs17038564-G	0.19	5E-7	(East Asian)	1.15	[1.09-1.21]	Illumina [~ 11000000] (imputed)	N
1084	chr2	65496057	65496058	rs17038564	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	2p14	AFTPH	rs17038564-G	0.161	2E-8		1.15	[1.10-1.21]	Illumina [~ 11000000] (imputed)	N
1084	chr2	65499467	65499468	rs72822411	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p14	ACTR2, SPRED2	rs72822411-?	NR	6E-9		0.0358519	[0.024-0.048] unit increase	Illumina [4804024] (imputed)	N
1084	chr2	65507912	65507913	rs62139085	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p14	ACTR2	rs62139085-A	0.251	8E-7		0.037	[0.023-0.051] unit increase	Affymetrix [7947838] (imputed)	N
1084	chr2	65508408	65508409	rs4358110	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p14		rs4358110-?	NR	1E-11		0.0151558	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1084	chr2	65516233	65516234	rs36010930	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p14	ACTR2	rs36010930-T	0.721315	8E-12		0.013946	[0.0099-0.0179] unit decrease	NR [13737936] (imputed)	N
1084	chr2	65520144	65520145	rs1039766	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p14	ACTR2, SPRED2	rs1039766-T	0.154085285	2E-6		1.0803672	[1.046437714-1.115396944]	Illumina [10439017] (imputed)	N
1084	chr2	65520144	65520145	rs1039766	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2p14	ACTR2, SPRED2	rs1039766-T	0.15385084	3E-6		1.1111958	[1.063401586-1.161138089]	Illumina [10439017] (imputed)	N
1085	chr2	65556323	65556324	rs6546146	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2p14	SPRED2	rs6546146-?	0.59	8E-7		1.1170688		Illumina [129464] (imputed)	N
1085	chr2	65562862	65562862	rs201473667	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2p14	SPRED2	rs201473667-?	0.47	5E-12		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1085	chr2	65562862	65562862	rs201473667	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2p14	SPRED2	rs201473667-?	NR	5E-12		1.0582011	[1.04-1.08]	Illumina [13757430] (imputed)	N
1085	chr2	65563570	65563573	rs35393756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p14		rs35393756-G	NR	3E-11		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1085	chr2	65571138	65571139	rs35493937	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p14		rs35493937-C	0.2305	1E-13		0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1085	chr2	65571138	65571139	rs35493937	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p14	Intergenic	rs35493937-C	0.2305	4E-14	(MTAG)	0.0117	[0.0086-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr2	65571888	65571889	rs61748094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p14		rs61748094-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1085	chr2	65577650	65577651	rs10186240	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p14	ACTR2	rs10186240-?	NR	7E-6	(NG monomethyl arginine)	0.15325338	[0.086-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1085	chr2	65580220	65580221	rs11126034	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2p14	SPRED2	rs11126034-A	0.34	3E-9		1.11	[1.07-1.15]	Illumina [133816] (imputed)	N
1085	chr2	65581299	65581300	rs11684155	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2p14	NR	rs11684155-T	0.775	3E-10		0.892	[0.86-0.93]	Illumina [11270530] (imputed)	N
1085	chr2	65581471	65581472	rs62139120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs62139120-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1085	chr2	65589512	65589513	rs4494728	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	2p14	NR	rs4494728-C	0.44999999999999996	8E-6		1.2195122	[1.12-1.33]	NR [8814543] (imputed)	N
1085	chr2	65595585	65595586	rs934734	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	952 Han Chinese ancestry cases, 943 Han Chinese ancestry controls	5,539 European ancestry cases, 20,169 European ancestry controls	2p14	SPRED2	rs934734-G		2E-8		1.142	[NR]	Affymetrix [1497047] (imputed)	N
1085	chr2	65595585	65595586	rs934734	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2p14	SPRED2	rs934734-G	0.49	5E-10		1.13	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1085	chr2	65597670	65597671	rs11673987	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2p14	SPRED2	rs11673987-?	NR	3E-8				Illumina [129464] (imputed)	N
1085	chr2	65598240	65598241	rs1858036	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2p14	SPRED2	rs1858036-?	NR	7E-10				Illumina [129464] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2p14		rs1858037-A	NR	1E-14		0.9	[0.88-0.93]	NR [13810676] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p14	SPRED2	rs1858037-A	NR	8E-14		0.0959337	[0.0095-0.1824] unit decrease	Illumina [8380626] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p14	SPRED2	rs1858037-A	0.84	7E-7	(East Asian)	0.15877	[0.096-0.222] unit decrease	Illumina [8380626] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2p14	SPRED2	rs1858037-A	0.35	6E-10	(EA)	0.10039	[0.069-0.132] unit decrease	Illumina [8380626] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	SPRED2	rs1858037-T	0.65	2E-9	(EA)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	SPRED2	rs1858037-T	0.52	3E-15		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1085	chr2	65598299	65598300	rs1858037	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2p14	SPRED2	rs1858037-T	0.16	1E-8	(East Asian)	1.19	[1.12-1.26]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1085	chr2	65601599	65601600	rs906578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs906578-A	0.392693	2E-25				Affymetrix, Illumina [24246363] (imputed)	N
1085	chr2	65604913	65604914	rs268120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p14		rs268120-A	0.2503	1E-13	(conditional-joint)	0.012	[0.0089-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1085	chr2	65608362	65608363	rs268134	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2p14		rs268134-A	0.2351	3E-8		40.967674	z score increase	NR [6814003]	N
1085	chr2	65608362	65608363	rs268134	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p14	SPRED2	rs268134-?	NR	2E-8		0.012981593	[0.0084-0.0175] unit increase	NR [7306098]	N
1085	chr2	65608362	65608363	rs268134	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p14	SPRED2	rs268134-?	0.249	2E-7	(EA)	1.19	[NR]	NR [6344733] (imputed)	N
1085	chr2	65608362	65608363	rs268134	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2p14	NR	rs268134-A	0.2504	4E-8		0.014137558	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1085	chr2	65608362	65608363	rs268134	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	2p14	SPRED2	rs268134-G		1E-10		1.21	[NR]	Illumina [> 644674] (imputed)	N
1085	chr2	65608908	65608909	rs1876518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p14	SPRED2	rs1876518-T	0.454633	1E-18		0.019735314	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65608908	65608909	rs1876518	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	2p14	SPRED2	rs1876518-?	NR	2E-8				Illumina [472854]	N
1085	chr2	65609886	65609887	rs140661185	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2p14	Intergenic	rs140661185-A	NR	1E-6	(between families)	4.893	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1085	chr2	65614508	65614509	rs3732102	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p14	Intergenic	rs3732102-C	0.8011	7E-9	(MTAG)	0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr2	65627405	65627406	rs2661796	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs2661796-C	0.398663	5E-19				Affymetrix, Illumina [24332387] (imputed)	N
1085	chr2	65633189	65633190	rs2661797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p14	NR	rs2661797-A	0.453488	4E-26		0.019205	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1085	chr2	65633189	65633190	rs2661797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs2661797-A	0.39961	5E-24				Affymetrix, Illumina [20825802] (imputed)	N
1085	chr2	65635687	65635688	rs2661798	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p14	SPRED2	rs2661798-T	0.454648	2E-13		0.016392795	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65635687	65635688	rs2661798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p14	NR	rs2661798-T	0.452714	2E-18		0.016253	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1085	chr2	65639294	65639294	rs78585807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p14	SPRED2	rs78585807-GAAAGAA	0.421976	2E-13		0.016598895	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65639294	65639294	rs78585807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p14	SPRED2	rs78585807-GAAAGAA	0.421969	1E-21		0.0219053	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65639294	65639294	rs78585807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p14	SPRED2	rs78585807-GAAAGAA	0.421972	3E-22		0.021840408	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65639542	65639543	rs2661794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p14		rs2661794-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1085	chr2	65639542	65639543	rs2661794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p14		rs2661794-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1085	chr2	65642096	65642097	rs6731993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p14		rs6731993-T	NR	6E-21		0.0228	[0.018-0.028] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1085	chr2	65642096	65642097	rs6731993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p14	NR	rs6731993-T	0.407782	4E-33		0.022535	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1085	chr2	65642096	65642097	rs6731993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p14	NR	rs6731993-T	0.408305	2E-31		0.022846	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1085	chr2	65642096	65642097	rs6731993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p14		rs6731993-?	NR	7E-24				NR [~ 8900000] (imputed)	N
1085	chr2	65642586	65642587	rs57368286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2p14	SPRED2	rs57368286-T	0.6846	3E-9		0.02302266	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65644615	65644616	rs62141075	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs62141075-T	0.350726	3E-36				Affymetrix, Illumina [24649327] (imputed)	N
1085	chr2	65645749	65645750	rs10166100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p14		rs10166100-T	NR	3E-23		0.0218	[0.017-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1085	chr2	65645773	65645774	rs10166362	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	2p14		rs10166362-G	0.591	2E-8				Affymetrix [10369434] (imputed)	N
1085	chr2	65646965	65646966	rs7565437	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p14	SPRED2	rs7565437-T	0.590225	1E-8		0.00818295	[0.0054-0.011] unit increase	Affymetrix [12370749]	N
1085	chr2	65646965	65646966	rs7565437	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2p14	SPRED2	rs7565437-C	0.4086	8E-9		0.02110318	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65651850	65651851	rs12470883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2p14	SPRED2	rs12470883-A	0.408805	8E-10		0.013909379	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65651850	65651851	rs12470883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2p14	SPRED2	rs12470883-A	0.4088	3E-22		0.022008516	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65652155	65652156	rs7572922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs7572922-T	0.368348	8E-31				Affymetrix, Illumina [23114412] (imputed)	N
1085	chr2	65652155	65652156	rs7572922	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p14	SPRED2	rs7572922-T	0.3733	6E-10		0.0171	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1085	chr2	65655011	65655012	rs2028150	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2p14	CEP68	rs2028150-C	0.5979	2E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1085	chr2	65655612	65655613	rs2028151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p14	SPRED2	rs2028151-T	0.408965	2E-28		0.024874512	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p14	SPRED2	rs7569084-T	0.5853	9E-16		0.0153	[0.012-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p14	SPRED2	rs7569084-T	0.584663	1E-9		0.01359917	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p14	SPRED2	rs7569084-T	0.584642	3E-17		0.01886476	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs7569084-T	0.516588	2E-21				Affymetrix, Illumina [19872809] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p14	NR	rs7569084-T	0.584311	1E-20		0.018707	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p14		rs7569084-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1085	chr2	65656968	65656969	rs7569084	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2p14	SPRED2	rs7569084-T	0.5838	4E-9		0.0213979	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65656975	65656976	rs7569257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p14	SPRED2	rs7569257-A	0.408903	8E-30		0.025464056	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65657040	65657041	rs7569113	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2p14		rs7569113-C	0.591	8E-10				Affymetrix [10369434] (imputed)	N
1085	chr2	65658368	65658369	rs7576126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2p14	NR	rs7576126-A	0.407264	3E-21		0.020354	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1085	chr2	65658368	65658369	rs7576126	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	2p14	SPRED2	rs7576126-?	0.007576	2E-17		20.47	[7.811-53.64]	Affymetrix [547296]	N
1085	chr2	65660977	65660978	rs7584078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs7584078-A	0.37146	3E-20				Affymetrix, Illumina [19905671] (imputed)	N
1085	chr2	65661842	65661843	rs13385171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p14		rs13385171-C	NR	6E-28		0.0242	[0.02-0.029] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1085	chr2	65661842	65661843	rs13385171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs13385171-C	0.519345	2E-49				Affymetrix, Illumina [23467995] (imputed)	N
1085	chr2	65661842	65661843	rs13385171	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p14	NR	rs13385171-C	0.583057	5E-49		0.027829	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1085	chr2	65661842	65661843	rs13385171	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p14	SPRED2	rs13385171-C	NR	3E-11		1.0679	NR	Affymetrix, Illumina [8278136] (imputed)	N
1085	chr2	65663380	65663381	rs74625883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p14	AC074391.1, SPRED2	rs74625883-A	0.175844	5E-16		0.023499774	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65664349	65664350	rs1437466	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2p14	FLJ16124	rs1437466-?	NR	5E-6		1.1	[1.06-1.14]	Illumina [at least 5000000] (imputed)	N
1085	chr2	65665272	65665273	rs13417564	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2p14		rs13417564-G	0.418	5E-15				Affymetrix [10369434] (imputed)	N
1085	chr2	65665272	65665273	rs13417564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p14	AC074391.1	rs13417564-T	0.58155	9E-16		0.018031787	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65665272	65665273	rs13417564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p14	AC074391.1	rs13417564-G	0.418416	4E-35		0.027694246	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1085	chr2	65665272	65665273	rs13417564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2p14	AC074391.1	rs13417564-T	0.5819	2E-12		0.02546185	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65665272	65665273	rs13417564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2p14	AC074391.1	rs13417564-T	0.582	3E-19		0.03251601	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65665640	65665641	rs2860773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p14	AC074391.1	rs2860773-T	0.407559	2E-18		0.019616622	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1085	chr2	65665640	65665641	rs2860773	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2p14	AC074391.1	rs2860773-T	0.4072	6E-11		0.02397075	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65665640	65665641	rs2860773	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2p14	AC074391.1	rs2860773-T	0.4072	6E-9		0.02121341	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
1085	chr2	65666673	65666674	rs6752053	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	2p14		rs6752053-T	0.591099	1E-9		0.0253057	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1086	chr2	65667271	65667272	rs6740462	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	2p14	SPRED2	rs6740462-C	0.15	2E-6				Illumina [522285]	N
1086	chr2	65667271	65667272	rs6740462	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p14	NR	rs6740462-A	0.74	6E-12	(EA)	1.0832434		Affymetrix, Illumina [~ 9000000] (imputed)	N
1086	chr2	65667271	65667272	rs6740462	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2p14	NR	rs6740462-A	0.74	2E-12	(EA)	1.1048803	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1086	chr2	65667271	65667272	rs6740462	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2p14	SPRED2	rs6740462-A	0.739	2E-8		1.081	[1.046-1.116]	Affymetrix, Illumina [1230000] (imputed)	N
1086	chr2	65686460	65686461	rs11675538	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2p14	AC074391.1	rs11675538-?	NR	3E-8	(subset analysis)			Illumina [130052]	N
1086	chr2	65701756	65701757	rs840967	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		SPRED2	rs840967-C	NR	1E-8		1.06	NR	NR [8016731] (imputed)	N
1086	chr2	65702802	65702803	rs840969	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2p14	intergenic	rs840969-T	0.2201	5E-6		0.89003	NR	Affymetrix, Illumina [30341632] (imputed)	N
1086	chr2	65752712	65752713	rs702885	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	2p14	intergenic	rs702885-?	NR	8E-6	(Theta power, Cz)	0.189	[0.11-0.27] unit decrease	Illumina [527829]	N
1086	chr2	65752774	65752775	rs11317100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p14		rs11317100-T	NR	2E-13		0.0129	[0.0096-0.0162] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1086	chr2	65758524	65758525	rs3845817	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs3845817-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1086	chr2	65758524	65758525	rs3845817	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2p14	intergenic	rs3845817-T	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1086	chr2	65759670	65759671	rs3911862	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p14	intergenic	rs3911862-A	0.446	1E-6		1.05506	[1.03-1.08]	NR [9372253] (imputed)	N
1086	chr2	65791580	65791581	rs897876	24892410	Leu HB	2014-06-03	PLoS One	A novel SNP associated with nighttime pulse pressure in young-onset hypertension patients could be a genetic prognostic factor for cardiovascular events in a general cohort in Taiwan.	Pulse pressure in young-onset hypertension	382 individuals	559 individuals	2p14	TGFA, FLJ16124	rs897876-T	0.406	2E-7	(Nighttime PP)	1.036	[0.45-1.62] unit increase	Illumina [560186]	N
1087	chr2	65819882	65819883	rs1115848	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2p14	MIR4778, SPRED2	rs1115848-?	NR	6E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1087	chr2	65822040	65822041	rs6546164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs6546164-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1087	chr2	65832376	65832377	rs840781	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2p14	AC007389.3	rs840781-C	0.019	8E-7		3.74	[2.21-6.33]	Illumina [7959153] (imputed)	N
1087	chr2	65837965	65837966	rs17478716	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p14	NR	rs17478716-T	0.02787	2E-8	(JAK3)	0.05404	NR unit increase	Illumina [1671387] (imputed)	N
1087	chr2	65851573	65851574	rs72886407	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p14	NR	rs72886407-A	0.02265	3E-8	(SULT2A1)	2.262	NR unit increase	Illumina [1671387] (imputed)	N
1087	chr2	65862377	65862378	rs1457451	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	2p14	Q6ZNG6	rs1457451-?	NR	3E-6	(transferrin saturation)			Illumina [315887]	N
1087	chr2	65887233	65887234	rs56003331	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	2p14	NR	rs56003331-?	NR	1E-5				NR [18617478] (imputed)	N
1087	chr2	65896164	65896165	rs13414156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs13414156-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1087	chr2	65899518	65899519	rs6546173	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p14	NR	rs6546173-C	NR	2E-6	(GEE model)	0.75928	[0.45-1.07] unit decrease	NR [NR] (imputed)	N
1087	chr2	65904429	65904430	rs4671137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs4671137-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1087	chr2	65908166	65908167	rs2901787	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p14	intergenic	rs2901787-T	NR	3E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1087	chr2	65908705	65908706	rs2901788	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	2p14	LOC105369166	rs2901788-?	NR	1E-7	(Gaussian-weighted model)			Illumina [501584]	N
1087	chr2	65919518	65919519	rs185857144	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p14	FLJ16124	rs185857144-C	1.0	2E-6	(AA)	4.664	NR unit increase	Illumina [NR] (imputed)	N
1087	chr2	65926938	65926939	rs11891634	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	2p14	intergenic	rs11891634-?	NR	7E-8				Illumina [501584]	N
1088	chr2	65939467	65939468	rs113269336	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p14	LOC100996770	rs113269336-?		3E-6				Illumina [4322238] (imputed)	N
1088	chr2	65942858	65942859	rs4671686	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p14	NR	rs4671686-?	NR	4E-10	(left inferior temporal)			NR [9227495] (imputed)	N
1088	chr2	65950182	65950183	rs62139656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs62139656-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1088	chr2	65955078	65955079	rs77987715	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	2p14	Intergenic	rs77987715-A	0.6547	5E-6		11.7152	[7.04-16.39] unit decrease	Illumina [~ 6000000] (imputed)	N
1088	chr2	65956539	65956540	rs77626157	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p14	AC074391.1	rs77626157-A	0.0591	7E-7		0.0968	[0.058-0.135] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1088	chr2	65961564	65961565	rs13008718	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative delirium after cardiac surgery	148 cases, 819 controls	NA	2p14	AC074391.1	rs13008718-?	NR	1E-6	(adjusted for atrial fibrillation, myocardial infarction, renal failure and stroke)	2.2222223	[1.61-3.03]	Illumina [9007469] (imputed)	N
1088	chr2	65965865	65965866	rs3752664	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2p14	DMRTA2, FAF1, CDKN2C	rs3752664-?		5E-9				NR [7428630] (imputed)	N
1088	chr2	65965865	65965866	rs3752664	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2p14	ROR1	rs3752664-?		2E-8				NR [7428630] (imputed)	N
1088	chr2	65966738	65966739	rs1549022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1549022-C	NR	4E-9		0.0167271	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1088	chr2	65970436	65970437	rs7570841	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2p14	PEAR1, LRRC71, ARHGEF11, ETV3L	rs7570841-?		1E-16				NR [7428630] (imputed)	N
1088	chr2	65971596	65971597	rs2287283	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p14	NR	rs2287283-T	0.6336	3E-13	(Pars Orbitalis)	2.965635	[2.17-3.76] unit increase	Affymetrix, Illumina [NR]	N
1088	chr2	65971789	65971789	rs142706617	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p14	NR	rs142706617-?	0.6253	1E-11	(Pars Triangularis)	7.4195647	[5.28-9.56] unit increase	Affymetrix, Illumina [NR]	N
1088	chr2	65971845	65971846	rs7562708	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2p14	NR	rs7562708-?		2E-21				NR [7428630] (imputed)	N
1088	chr2	65974232	65974233	rs6743531	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p14		rs6743531-G	0.34	1E-78		18.79	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr2	65974661	65974661	rs770408932	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2p14	NR	rs770408932-D	0.622	1E-7	(Caudal Middle Frontal)	10.396429	[6.57-14.22] unit decrease	Affymetrix, Illumina [NR]	N
1088	chr2	65974662	65974663	rs56213130	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p14		rs56213130-C	0.34	1E-240		33.13	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr2	65974662	65974663	rs56213130	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p14		rs56213130-C	0.34	1E-72		18.03	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr2	65974662	65974663	rs56213130	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p14	NR	rs56213130-C	0.3945	1E-17				NR [9056863] (imputed)	N
1088	chr2	65974662	65974663	rs56213130	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p14	NR	rs56213130-C	0.3945	1E-17				NR [9056863] (imputed)	N
1088	chr2	65976904	65976905	rs6546175	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 58)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p14		rs6546175-T	0.377210004	5E-12				Illumina [7417619] (imputed)	N
1088	chr2	65976904	65976905	rs6546175	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	2p14	NR	rs6546175-?	NR	4E-7	(Richness)	13.3351	[8.21-18.46] unit decrease	Illumina [5293637] (imputed)	N
1088	chr2	65976904	65976905	rs6546175	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	2p14	NR	rs6546175-?	NR	3E-6	(ACE metric)	0.798651	[0.47-1.13] unit decrease	Illumina [5293637] (imputed)	N
1088	chr2	65983014	65983015	rs2860911	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 22)	19,670 European ancestry individuals	NA	2p14		rs2860911-?	NR	1E-74				NR [9705931] (imputed)	N
1088	chr2	65983014	65983015	rs2860911	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p14	NR	rs2860911-?	NR	2E-9	(left inferior temporal)			NR [9227495] (imputed)	N
1088	chr2	65984025	65984026	rs7600385	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2p14	NR	rs7600385-?	NR	2E-8	(left rostral anterior cingulate)			NR [9227495] (imputed)	N
1088	chr2	65999622	65999623	rs888278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs888278-G	NR	3E-9		0.017532	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1088	chr2	66012031	66012032	rs10179158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs10179158-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1088	chr2	66028198	66028199	rs13406620	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs13406620-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1088	chr2	66050701	66050702	rs17528766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs17528766-T	NR	4E-8		0.0261714	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
1089	chr2	66073551	66073552	rs871537	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	2p14	SPRED2, MIR4778	rs871537-?	NR	4E-8		0.04133	[0.027-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1089	chr2	66090958	66090959	rs67280839	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2p14	SPRED2, MIR4778	rs67280839-?		3E-8		0.0393	[0.025-0.053] unit increase	Illumina [31500000] (imputed)	N
1089	chr2	66090958	66090959	rs67280839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p14		rs67280839-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1089	chr2	66095377	66095378	rs993466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs993466-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1089	chr2	66095377	66095378	rs993466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs993466-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1089	chr2	66104880	66104881	rs2631669	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p14	AC074391.1	rs2631669-T	0.4717	2E-8		0.0974	[0.063-0.131] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1089	chr2	66141398	66141399	rs6546195	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p14	NR	rs6546195-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1089	chr2	66177581	66177582	rs1385171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs1385171-C	NR	2E-9		0.0169626	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1089	chr2	66177581	66177582	rs1385171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1385171-C	NR	3E-9		0.0167845	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1089	chr2	66184140	66184141	rs60959046	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 89)	19,670 European ancestry individuals	NA	2p14		rs60959046-?	NR	3E-8				NR [9705931] (imputed)	N
1090	chr2	66192539	66192540	rs191859725	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs191859725-T	NR	4E-8		0.0284297	[0.018-0.039] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66196725	66196726	rs11900401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs11900401-T	NR	1E-9		0.0310204	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66196725	66196726	rs11900401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs11900401-T	NR	1E-9		0.0310247	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66197122	66197123	rs12468920	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p14	NR	rs12468920-G	0.307	2E-8		0.001388	[0.00091-0.00187] unit increase	Affymetrix [NR] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p14	NR	rs1385167-A	0.8621	8E-27		0.0265	[0.022-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p14	NA	rs1385167-A	0.862	6E-20		0.0224	[0.018-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2p14	MEIS1	rs1385167-A	0.8459	3E-7		0.0257	[0.016-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p14	MEIS1	rs1385167-G	0.1556	1E-8		0.0265	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p14	MEIS1	rs1385167-G	0.1549	3E-6	(men)	0.0315	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p14	MEIS1	rs1385167-G	0.1496	2E-7	(EA, men)	0.0363	[0.023-0.05] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1090	chr2	66200647	66200648	rs1385167	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p14	MEIS1	rs1385167-G	0.1475	2E-9	(EA)	0.0293	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1090	chr2	66208118	66208119	rs1484475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs1484475-T	NR	1E-9		0.0217139	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66208118	66208119	rs1484475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1484475-T	NR	2E-9		0.0213471	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66208118	66208119	rs1484475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1484475-T	NR	6E-10		0.0221645	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66208118	66208119	rs1484475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1484475-T	NR	4E-10		0.0224226	[0.015-0.029] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66210212	66210213	rs11902527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p14	NR	rs11902527-A	0.675589	2E-8		0.00467628	[0.0029-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
1090	chr2	66210212	66210213	rs11902527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p14	NR	rs11902527-A	0.675589	6E-6		0.00422313	[0.0023-0.0062] unit increase	Affymetrix [16582965] (imputed)	N
1090	chr2	66211788	66211789	rs10210513	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2p14	NR	rs10210513-A	0.855921310793251	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr2	66211788	66211789	rs10210513	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2p14	NR	rs10210513-A	0.855921310793251	4E-10		0.029621748	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1090	chr2	66213206	66213206	rs5831786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs5831786-GA	NR	4E-9		0.0185068	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66213206	66213206	rs5831786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs5831786-GA	NR	5E-9		0.0183192	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66213206	66213206	rs5831786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs5831786-GA	NR	1E-9		0.019285	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66216291	66216292	rs13418383	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	2p14	NR	rs13418383-?	NR	8E-6		0.06	[0.034-0.086] unit decrease	Illumina [at least 560000] (imputed)	N
1090	chr2	66218086	66218087	rs13386347	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs13386347-?	NR	9E-22				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66218086	66218087	rs13386347	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs13386347-?	NR	2E-24				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66218480	66218481	rs2052670	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2p14	KRT18P33	rs2052670-A	0.6562	2E-8	(EA)	0.02	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1090	chr2	66225278	66225279	rs1155924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1155924-C	NR	1E-8		0.0163238	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66225278	66225279	rs1155924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1155924-C	NR	8E-9		0.0165231	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66228400	66228401	rs13429325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs13429325-C	NR	7E-9		0.0304139	[0.02-0.041] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66228400	66228401	rs13429325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs13429325-C	NR	3E-8		0.0293539	[0.019-0.04] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66228400	66228401	rs13429325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs13429325-C	NR	4E-8		0.0292395	[0.019-0.04] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66228538	66228539	rs13429266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs13429266-A	NR	1E-8		0.0298188	[0.02-0.04] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66234201	66234202	rs6719672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs6719672-G	NR	4E-15		0.0294708	[0.022-0.037] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66234201	66234202	rs6719672	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p14	NR	rs6719672-G	0.18	5E-25		0.025	[0.02-0.03] unit increase	Affymetrix [2446094] (imputed)	N
1090	chr2	66234201	66234202	rs6719672	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p14	NR	rs6719672-G	0.18	5E-8				Affymetrix [2446094] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs6719428-C	NR	9E-16		0.0250837	[0.019-0.031] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs6719428-C	NR	3E-16		0.0255455	[0.019-0.032] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs6719428-C	NR	4E-16		0.0255581	[0.019-0.032] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs6719428-C	NR	2E-15		0.0251092	[0.019-0.031] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p14	NR	rs6719428-T	0.7052	2E-26		0.0209	[0.017-0.025] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr2	66238004	66238005	rs6719428	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p14	NR	rs6719428-T	0.7053	4E-18		0.017	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1090	chr2	66239262	66239263	rs6726464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs6726464-A	NR	2E-14		0.0288678	[0.021-0.036] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66242524	66242525	rs10190249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs10190249-?	NR	7E-23				NR [~ 8900000] (imputed)	N
1090	chr2	66258700	66258701	rs2699783	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	2p14	MIR4778	rs2699783-?	NR	7E-6				NR [up to 8466825] (imputed)	N
1090	chr2	66277660	66277661	rs1032110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs1032110-C	NR	2E-9		0.0190622	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66285515	66285516	rs1881878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs1881878-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66285515	66285516	rs1881878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs1881878-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66287177	66287178	rs7571668	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs7571668-T	NR	6E-10		0.0205548	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66288662	66288663	rs10167906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs10167906-C	NR	5E-9		0.0198909	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66288662	66288663	rs10167906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs10167906-C	NR	2E-9		0.0203866	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1090	chr2	66288662	66288663	rs10167906	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC074391.1	rs10167906-C	NR	3E-9		0.0203142	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
1090	chr2	66300360	66300361	rs2627855	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p14	FLJ16124	rs2627855-A	0.465199	4E-6		1.03	[1.02-1.05]	NR [8126035] (imputed)	N
1090	chr2	66301622	66301623	rs62146173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC074391.1	rs62146173-C	NR	3E-8		0.0156459	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
1090	chr2	66303503	66303504	rs79850428	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs79850428-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66312886	66312887	rs75978807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs75978807-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1090	chr2	66320547	66320548	rs13007314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC074391.1	rs13007314-G	NR	2E-8		0.0167537	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1090	chr2	66320547	66320548	rs13007314	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC074391.1	rs13007314-G	NR	7E-9		0.0171744	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1091	chr2	66405843	66405844	rs200873572	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p14		rs200873572-?	NR	3E-10		0.0179743	[0.012-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1091	chr2	66439288	66439289	rs184148048	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p14	SPRED2, MIR4778	rs184148048-A	0.02	6E-11		0.56	[0.4-0.72] unit increase	Illumina [~ 9000000] (imputed)	N
1091	chr2	66439288	66439289	rs184148048	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2p14	SPRED2, MIR4778	rs184148048-A	0.02	2E-10	(EA)	0.5763	[0.4-0.75] unit increase	Illumina [~ 9000000] (imputed)	N
1092	chr2	66537343	66537344	rs4414666	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	2p14	SPRED2, MIR4778	rs4414666-T	NR	4E-16		0.0598	unit decrease	Illumina [15409056] (imputed)	N
1092	chr2	66541265	66541266	rs12713563	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p14	MEIS1	rs12713563-T	0.64	7E-10		0.082	[0.057-0.107] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1092	chr2	66541265	66541266	rs12713563	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p14	SPRED2, MIR4778	rs12713563-T	0.6391	3E-9		0.081	[0.053-0.109] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1092	chr2	66567895	66567896	rs2860235	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2p14	MEIS1	rs2860235-C	NR	4E-8		1.0752687	[1.05-1.11]	Affymetrix [at least 665500] (imputed)	N
1092	chr2	66567895	66567896	rs2860235	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p14	SPRED2, MIR4778	rs2860235-T	0.6324	1E-8		0.077	[0.049-0.105] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1092	chr2	66574389	66574390	rs13009933	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p14	MIR4778	rs13009933-C	0.64	5E-7				Affymetrix, Illumina [8002429] (imputed)	N
1092	chr2	66576314	66576315	rs148363926	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	2p14	NR	rs148363926-?	NR	9E-6		1.2706	[1.17-1.38]	Illumina [NR] (imputed)	N
1093	chr2	66592410	66592411	rs2946370	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	2p14	MIR4778-LOC729348	rs2946370-T	NR	1E-8		1.131	[1.09-1.17]	Illumina [11610548] (imputed)	N
1093	chr2	66642949	66642950	rs7596219	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p14	intergenic	rs7596219-G	0.0253	2E-12		0.08218895	[0.059-0.105] unit increase	Affymetrix [~ 2500000] (imputed)	N
1093	chr2	66647631	66647632	rs111972619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p14		rs111972619-C	0.024532	1E-12		0.052538097	[0.038-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1093	chr2	66650773	66650774	rs58966835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p14	MEIS1-AS3	rs58966835-C	0.024555	2E-16		0.059593964	[0.045-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1093	chr2	66650773	66650774	rs58966835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p14	MEIS1-AS3	rs58966835-C	0.024562	1E-10		0.04799659	[0.033-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr2	66652884	66652885	rs74702681	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p14	NR	rs74702681-T	NR	1E-10		1.172	[1.12-1.23]	Affymetrix, Illumina [29235255] (imputed)	N
1093	chr2	66652884	66652885	rs74702681	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p14	MEIS1-AS3	rs74702681-T	0.02	2E-9		1.17	[1.11-1.23]	Illumina [20370935] (imputed)	N
1093	chr2	66652981	66652982	rs6546230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs6546230-G	0.649558	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
1093	chr2	66652981	66652982	rs6546230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p14	NR	rs6546230-G	0.697019	4E-10		0.01315	[0.009-0.0173] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1093	chr2	66657938	66657939	rs756292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p14		rs756292-C	NR	5E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1093	chr2	66658859	66658860	rs6546232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p14	NR	rs6546232-T	0.693355	2E-10		0.013406	[0.0093-0.0175] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p14	MEIS1-AS3	rs13033745-T	0.693378	8E-11		0.01554862	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs13033745-T	0.619078	3E-20				Affymetrix, Illumina [24649327] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p14	NR	rs13033745-T	0.691802	5E-14		0.015007	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs13033745-T	0.6402	3E-10				Affymetrix, Illumina [19872809] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p14	NR	rs13033745-T	0.692973	3E-10		0.013508	[0.0093-0.0177] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p14		rs13033745-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1093	chr2	66660402	66660403	rs13033745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p14		rs13033745-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1093	chr2	66665145	66665146	rs2280334	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p14	MEIS1	rs2280334-T	0.3791	2E-9		0.0115	[0.0078-0.0152] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1093	chr2	66665145	66665146	rs2280334	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p14	NR	rs2280334-T	NR	5E-8		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
1093	chr2	66668308	66668309	rs950965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p14		rs950965-G	NR	5E-26		0.0212	[0.017-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1093	chr2	66668308	66668309	rs950965	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2p14		rs950965-A	0.342	2E-12				Affymetrix [10369434] (imputed)	N
1093	chr2	66668308	66668309	rs950965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p14	AC092669.1, MEIS1	rs950965-G	0.659135	2E-17		0.020723773	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1093	chr2	66668308	66668309	rs950965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p14	AC092669.1, MEIS1	rs950965-G	0.65913	3E-23		0.024020743	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1093	chr2	66668308	66668309	rs950965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs950965-G	0.588939	3E-31				Affymetrix, Illumina [24588908] (imputed)	N
1093	chr2	66668308	66668309	rs950965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p14	NR	rs950965-G	0.657743	2E-29		0.021694	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1093	chr2	66670975	66670976	rs1401444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs1401444-A	0.593102	8E-12				Affymetrix, Illumina [24332387] (imputed)	N
1093	chr2	66670975	66670976	rs1401444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p14	NR	rs1401444-A	0.650085	4E-11		0.012913	[0.0091-0.0167] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1093	chr2	66670975	66670976	rs1401444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs1401444-C	0.354088	7E-36				Affymetrix, Illumina [17210439] (imputed)	N
1093	chr2	66670975	66670976	rs1401444	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2p14	MEIS1	rs1401444-A	0.6518	3E-6		0.0072	[0.0041-0.0103] unit increase	Affymetrix [~ 7740000] (imputed)	N
1093	chr2	66673861	66673862	rs11883967	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p14	MEIS1	rs11883967-A	0.338493	4E-10		0.0125786	[0.0086-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
1093	chr2	66673861	66673862	rs11883967	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p14	MEIS1	rs11883967-A	0.338492	6E-9		0.012114	[0.008-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
1093	chr2	66677530	66677531	rs939136	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p14	NR	rs939136-G	0.337823	3E-38		0.026274	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1093	chr2	66677815	66677816	rs1519102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p14		rs1519102-C	NR	7E-11		0.0113	[0.008-0.0146] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1093	chr2	66677815	66677816	rs1519102	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs1519102-G	0.3109	2E-8		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1093	chr2	66680891	66680892	rs1519104	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p14	MEIS1	rs1519104-A	0.6821	2E-10		0.016	[0.011-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1093	chr2	66710577	66710578	rs62144048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs62144048-G	0.177942	2E-12				Affymetrix, Illumina [23467995] (imputed)	N
1094	chr2	66716974	66716975	rs138191925	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2p14	MEIS1	rs138191925-?	NR	5E-6		3.25		Illumina [6778521] (imputed)	N
1094	chr2	66723698	66723699	rs11692361	27506219	Wang W	2016-08-09	Reprod Sci	Pooling-Based Genome-Wide Association Study Identifies Risk Loci in the Pathogenesis of Ovarian Endometrioma in Chinese Han Women.	Endometriosis	50 Chinese Han ancestry cases, 50 Chinese Han ancestry uterine myoma or hydrosalpinx controls	1,466 Chinese Han ancestry cases, 1,410 Chinese Han ancestry uterine myoma or hydrosalpinx controls	2p14	MEIS1	rs11692361-?	NR	4E-7		1.4388489	[1.25-1.65]	Affymetrix [906600]	N
1094	chr2	66725061	66725062	rs62144050	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2p14	MEIS1	rs62144050-C	0.28	2E-7		0.2246	[0.14-0.31] unit increase	Affymetrix [19941912] (imputed)	N
1094	chr2	66744602	66744603	rs3890755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs3890755-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
1094	chr2	66749609	66749610	rs4430933	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	2p14	MEIS1	rs4430933-A	0.39	5E-30		1.3	[1.08-1.52] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1094	chr2	66749827	66749828	rs6724747	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	2p14	MEIS1	rs6724747-A	0.346	8E-13		1.379	[1-1.76] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1094	chr2	66750016	66750017	rs4544423	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs4544423-G	0.616014	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 2am-4am)	88,411 European ancestry individuals	NA	2p14		rs113851554-T	0.05	8E-39		0.142	unit increase	Affymetrix [8951705] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Total log acceleration 12am-2am)	88,411 European ancestry individuals	NA	2p14		rs113851554-T	0.05	7E-37		0.138	unit increase	Affymetrix [8951705] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Relative amplitude)	88,411 European ancestry individuals	NA	2p14		rs113851554-T	0.05	7E-15		0.082	unit decrease	Affymetrix [8951705] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Mid-point of the five least active hours of the day	88,411 European ancestry individuals	NA	2p14		rs113851554-T	0.05	5E-22		0.105	unit increase	Affymetrix [8951705] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Average log acceleration during the five least active hours of the day	88,411 European ancestry individuals	NA	2p14		rs113851554-T	0.05	1E-33		0.13	unit increase	Affymetrix [8951705] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	2p14	MEIS1	rs113851554-T	0.07	3E-276		2.03	[1.99-2.07]	Affymetrix, Illumina [15838848] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep start time	90,515 individuals	NA	2p14	MEIS1	rs113851554-T	NR	2E-9		0.07	[0.046-0.094] unit increase	NR [11024754] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep activity levels	90,515 individuals	NA	2p14	MEIS1	rs113851554-G	NR	2E-17		0.091	[0.069-0.113] unit increase	NR [11024754] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	2p14	MEIS1	rs113851554-T	0.05268	1E-21				Illumina [5508534] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p14	MEIS1	rs113851554-T	0.05769400000000002	1E-43		1.14	[1.12-1.17]	Affymetrix [14661600] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p14	MEIS1	rs113851554-T	0.05769400000000002	1E-29		1.14	[1.12-1.17]	Affymetrix [14661600] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p14		rs113851554-T	0.05058	1E-8		0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs113851554-T	0.0506	2E-51		1.229	[1.2-1.26]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NA	rs113851554-T	0.0557	2E-27	(Female)	1.193	[1.16-1.22]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p14	MEIS1	rs113851554-G	0.9433	2E-13		1.0566356		Affymetrix [11880941] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p14	MEIS1	rs113851554-G	0.9433	2E-13		1.0554847		Affymetrix [11880941] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	2p14	MEIS1	rs113851554-G	0.943	3E-18		0.09	[0.07-0.11] SD units increase	NR [9926106] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	2p14	MEIS1	rs113851554-?	NR	6E-11		0.0048	unit increase	Affymetrix [7969123] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	2p14	MEIS1	rs113851554-T	0.07	2E-280		1.92	[1.85-1.99]	Affymetrix, Illumina [6864281] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints (dichotomous)	32,384 European ancestry cases,  27,128 European ancestry controls	NA	2p14	MEIS1	rs113851554-?		2E-19		1.27	[1.21-1.34]	Affymetrix [at least 12428592] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints (continuous)	12,863 European ancestry male cases, 19,521 European ancestry female cases, 40,776 European ancestry male controls, 39,846 European ancestry female controls	NA	2p14	MEIS1	rs113851554-	NR	6E-22		0.087	[0.069-0.105] unit increase	Affymetrix [at least 12428592] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints	19,521 European ancestry female cases, 39,846 European ancestry female controls	1,983 Icelandic ancestry male cases, 1,791 Icelandic ancestry female cases, 2,064 Icelandic ancestry male controls, 1,727 Icelandic ancestry female controls	2p14	MEIS1	rs113851554-T	0.056	7E-13		7.19	z-score increase	Affymetrix [at least 12428592] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Insomnia complaints	12,863 European ancestry male cases, 19,521 European ancestry female cases, 40,776 European ancestry male controls, 39,846 European ancestry female controls	1,983 Icelandic ancestry male cases, 1,791 Icelandic ancestry female cases, 2,064 Icelandic ancestry male controls, 1,727 Icelandic ancestry female controls	2p14	MEIS1	rs113851554-T	0.056	4E-19		8.94	z-score increase	Affymetrix [at least 12428592] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	2p14	MEIS1	rs113851554-?	0.056	4E-16				Affymetrix [up to 73355677] (imputed)	N
1094	chr2	66750563	66750564	rs113851554	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Insomnia	up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls,	NA	2p14	MEIS1	rs113851554-T	NR	9E-19		1.26	[1.20-1.33]	Affymetrix [up to 73355677] (imputed)	N
1094	chr2	66752250	66752251	rs4233937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p14		rs4233937-G	NR	1E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1094	chr2	66752250	66752251	rs4233937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p14		rs4233937-G	NR	3E-10		0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1094	chr2	66752250	66752251	rs4233937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p14	MEIS1	rs4233937-G	0.606598	8E-12		0.015460026	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1094	chr2	66752250	66752251	rs4233937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p14	MEIS1	rs4233937-G	0.60662	1E-10		0.014462945	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	8E-20	(-116 ms)	0.0530393	[0.042-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	5E-23	(-100 ms)	0.0569371	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	5E-14	(-122 ms)	0.0436522	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	4E-23	(-98 ms)	0.0569476	[0.046-0.068] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	3E-25	(-106 ms)	0.0597115	[0.048-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	3E-23	(-112 ms)	0.0574301	[0.046-0.069] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	2E-8	(-128 ms)	0.0325757	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	2E-24	(-108 ms)	0.058836	[0.048-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	2E-17	(-118 ms)	0.0495633	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	2E-15	(-120 ms)	0.0462659	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	2E-12	(-124 ms)	0.0408262	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	1E-21	(-114 ms)	0.055703	[0.045-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2p14	MEIS1	rs11677371-A	0.388879	1E-10	(-126 ms)	0.0371092	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs11677371-G	0.633862	5E-10				Affymetrix, Illumina [24558453] (imputed)	N
1094	chr2	66756412	66756413	rs11677371	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p14	MEIS1	rs11677371-A	0.4732	6E-9	(AA)	2.3863	[1.58-3.19] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1094	chr2	66756975	66756976	rs3891585	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 15)	3,566 European ancestry individuals	4,680 European ancestry individuals	2p14		rs3891585-A	0.38151991	4E-10				Illumina [7417619] (imputed)	N
1094	chr2	66756975	66756976	rs3891585	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p14	MEIS1	rs3891585-A	0.3864	8E-96		1.3493	[1.22-1.48] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1094	chr2	66756975	66756976	rs3891585	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p14	NR	rs3891585-?	NR	9E-9		1.378881	[0.91-1.85] unit decrease	Illumina [26703325] (imputed)	N
1094	chr2	66756975	66756976	rs3891585	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	2p14	MEIS1	rs3891585-A	0.43	1E-11		2.13	[1.52-2.74] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
1094	chr2	66759175	66759176	rs115566126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	MEIS1	rs115566126-C	NR	5E-8		0.0588217	[0.038-0.08] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66759175	66759176	rs115566126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	MEIS1	rs115566126-C	NR	4E-8		0.0594111	[0.038-0.081] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66760078	66760079	rs11678354	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p14	NR	rs11678354-?	NR	4E-6		1.396234	[0.8-1.99] unit increase	Illumina [26703325] (imputed)	N
1094	chr2	66760078	66760079	rs11678354	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	2p14	MEIS1	rs11678354-A	0.361	5E-9		1.259	[0.84-1.68] unit increase	Illumina [2300000] (imputed)	N
1094	chr2	66764307	66764308	rs12469063	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p14	MEIS1	rs12469063-A	0.758097	3E-17		0.0180312	[0.014-0.022] unit decrease	NR [13737936] (imputed)	N
1094	chr2	66764307	66764308	rs12469063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p14		rs12469063-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1094	chr2	66764307	66764308	rs12469063	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p14		rs12469063-?	NR	1E-22		0.0222558	[0.018-0.027] unit decrease	Affymetrix [20259828] (imputed)	N
1094	chr2	66764996	66764997	rs10865355	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	2p14	MEIS1	rs10865355-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
1094	chr2	66764996	66764997	rs10865355	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p14	NR	rs10865355-?	NR	6E-9		1.39845	[0.93-1.87] unit decrease	Illumina [26703325] (imputed)	N
1094	chr2	66764996	66764997	rs10865355	21347284	Smith JG	2011-02-10	PLoS Genet	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	2p14	MEIS1	rs10865355-A	0.43	3E-9		2.89	[1.95-3.83] unit increase	Affymetrix [2801419] (imputed)	N
1094	chr2	66768261	66768262	rs9798015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs9798015-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1094	chr2	66771046	66771047	rs997153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	MEIS1	rs997153-A	NR	3E-9		0.017134	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66771046	66771047	rs997153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	MEIS1	rs997153-A	NR	8E-10		0.0176589	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p14		rs11897119-T	0.6042	6E-13		0.16207361	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p14		rs11897119-T	0.6043	5E-9		0.095076226	[0.064-0.126] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	2p14	NR	rs11897119-?	NR	4E-8		1.331741	[0.86-1.81] unit increase	Illumina [26703325] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p14	NA	rs11897119-T	0.594	4E-15		0.0134	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p14	NR	rs11897119-T	0.594	4E-15		0.0134	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	MEIS1	rs11897119-C	0.39790000000000003	2E-8	(EA)	0.0233	[0.015-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66771999	66772000	rs11897119	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	2p14	MEIS1	rs11897119-C	0.39	5E-11		1.36	[0.95-1.77] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1094	chr2	66772961	66772962	rs13029520	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2p14	MEIS1, MIR4778, MEIS1-AS3	rs13029520-T	0.4	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1094	chr2	66772961	66772962	rs13029520	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	2p14	MEIS1, MEIS1-AS3, MIR4778	rs13029520-T	0.4	2E-7	(women)	0.044	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1094	chr2	66772961	66772962	rs13029520	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2p14	MEIS1-AS3, MIR4778, MEIS1	rs13029520-T	0.3973	6E-7		0.019	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1094	chr2	66781452	66781453	rs2300478	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	2p14	MEIS1	rs2300478-G	0.24	3E-49		1.68	[1.57-1.81]	Affymetrix [301406]	N
1094	chr2	66781452	66781453	rs2300478	17637780	Winkelmann J	2007-07-18	Nat Genet	Genome-wide association study of restless legs syndrome identifies common variants in three genomic regions.	Restless legs syndrome	401 European ancestry cases, 1,644 European ancestry controls	906 European ancestry cases, 891 European ancestry controls, 255 French Canadian cases, 287 French Canadian controls	2p14	MEIS1	rs2300478-G	0.24	3E-28		1.74	[1.57-1.92]	Affymetrix [236758]	N
1094	chr2	66782466	66782467	rs2300481	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p14	MEIS1	rs2300481-T	0.3787	6E-12		0.1857	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p14	NR	rs2300481-T	0.3903	5E-15		0.0145	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p14	MEIS1	rs2300481-T	0.3857	8E-15		0.1949	[0.15-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	MEIS1	rs2300481-T	0.3942	1E-6	(EA, women)	0.0288	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	MEIS1	rs2300481-T	0.3942	7E-8	(EA)	0.0289	[0.018-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	MEIS1	rs2300481-T	0.3941	9E-7	(EA, women)	0.0326	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	MEIS1	rs2300481-?	0.3942	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	MEIS1	rs2300481-?	0.3942	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2p14	MEIS1-AS3, MIR4778	rs2300481-T	0.39538080480749	5E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1094	chr2	66782466	66782467	rs2300481	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2p14	MEIS1-AS3, MIR4778	rs2300481-T	0.39538080480749	1E-7		0.02104353	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1094	chr2	66783939	66783940	rs2284706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	MEIS1	rs2284706-G	NR	3E-8		0.0264708	[0.017-0.036] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66783939	66783940	rs2284706	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	MEIS1	rs2284706-G	NR	1E-8		0.0270905	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66783939	66783940	rs2284706	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs2284706-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1094	chr2	66785179	66785180	rs11679120	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NA	rs11679120-A	0.04114	4E-27	(Male)	1.302	[1.25-1.35]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66787069	66787070	rs13023965	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MEIS1	rs13023965-?	NR	2E-12		3.24117	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1094	chr2	66787069	66787070	rs13023965	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MEIS1	rs13023965-?	NR	1E-11	(male)	2.94784	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1094	chr2	66788590	66788591	rs2110974	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p14	MEIS1	rs2110974-A	0.2999	2E-6		0.0338	[0.02-0.048] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1094	chr2	66789340	66789341	rs11126082	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs11126082-G	0.5602	8E-13		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66792108	66792109	rs12614369	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs12614369-A	0.8158	7E-9		1.045	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66798281	66798282	rs2861108	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	2p14	MEIS1	rs2861108-G	0.25	4E-6		0.929	[0.54-1.32] unit decrease	Illumina [6380737] (imputed)	N
1094	chr2	66806277	66806278	rs11126083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007392.3	rs11126083-C	NR	4E-8		0.0160421	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66806277	66806278	rs11126083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007392.3	rs11126083-C	NR	1E-8		0.0165751	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1094	chr2	66806602	66806603	rs13432332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007392.3	rs13432332-C	NR	1E-12		0.0200101	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1094	chr2	66806602	66806603	rs13432332	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007392.3	rs13432332-C	NR	7E-13		0.0202612	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1094	chr2	66806602	66806603	rs13432332	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs13432332-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1094	chr2	66815718	66815719	rs34036083	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs34036083-C	0.3424	2E-8		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66817401	66817402	rs984306	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs984306-C	0.2453	8E-10		1.0438414	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1094	chr2	66820714	66820715	rs55767876	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	2p14	NR	rs55767876-G	NR	6E-6	(Hispanic)	4.51	[2.6-6.42] unit increase	Affymetrix [14000000] (imputed)	N
1095	chr2	66857452	66857453	rs141078219	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	2p14	MEIS1, ETAA1	rs141078219-?	NR	1E-11		1.08	[1.056-1.104]	Illumina [13729857] (imputed)	N
1095	chr2	66891387	66891388	rs7593846	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	2p14	MEIS1	rs7593846-G	0.315	1E-13		1.21	1.10-1.32	Affymetrix [435183]	N
1095	chr2	66906039	66906040	rs10206999	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs10206999-A	0.238215	3E-10		0.0227094	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
1095	chr2	66915456	66915457	rs11888281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs11888281-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1095	chr2	66958803	66958804	rs10490193	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	2p14	MEIS1	rs10490193-A	NR	7E-6		4.494	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1095	chr2	66966065	66966066	rs2901879	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	2p14	MEIS1, DNMT3AP1	rs2901879-?	0.41-0.49	7E-7	(Red meat)	1.11	[1.06-1.16]	Affymetrix, Illumina [> 2700000] (imputed)	N
1095	chr2	66972842	66972843	rs7566062	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs7566062-T	0.2248	1E-16		1.061	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1095	chr2	66976853	66976854	rs72826719	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p14	LINC01797/LINC01799	rs72826719-A	0.04928100000000002	2E-13		1.07	[1.04-1.09]	Affymetrix [14661600] (imputed)	N
1095	chr2	66976853	66976854	rs72826719	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2p14	LINC01797/LINC01799	rs72826719-A	0.04928100000000002	1E-6		1.07	[1.04-1.09]	Affymetrix [14661600] (imputed)	N
1096	chr2	66978010	66978011	rs62148311	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NA	rs62148311-A	0.1793	2E-12	(Female)	1.071	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1096	chr2	67022233	67022234	rs78206187	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs78206187-G	0.0558	3E-13		1.098901	[1.07-1.12]	Affymetrix, Illumina [NR] (imputed)	N
1096	chr2	67025544	67025545	rs79545773	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	2p14	AC009474.1	rs79545773-A	0.04274	7E-9				Illumina [5508534] (imputed)	N
1096	chr2	67055114	67055115	rs17032597	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Milk allergy	291 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 614 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	2p14	LOC100289292, ETAA1	rs17032597-?	NR	2E-6				Illumina [6459842] (imputed)	N
1096	chr2	67076859	67076860	rs5831841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p14		rs5831841-G	0.291652	2E-9		0.014543462	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr2	67078618	67078619	rs35195586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs35195586-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1096	chr2	67081506	67081507	rs12713575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p14		rs12713575-A	0.251445	3E-9		0.015050532	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1096	chr2	67081506	67081507	rs12713575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p14		rs12713575-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1096	chr2	67090366	67090367	rs17631680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2p14		rs17631680-C	NR	5E-9		0.1045	[0.069-0.14] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1097	chr2	67134425	67134426	rs75452188	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs75452188-A	0.878	2E-8		1.053	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1097	chr2	67153671	67153672	rs76573344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs76573344-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1098	chr2	67243108	67243109	rs11886159	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2p14	NR	rs11886159-?	NR	4E-7		0.4335	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1098	chr2	67253621	67253622	rs72904859	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2p14	NR	rs72904859-?	NR	4E-7		0.4346	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1098	chr2	67266951	67266952	rs193131030	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2p14	NR	rs193131030-?	NR	7E-10	(Ep-CAM)	1.62316	[1.11-2.14] unit increase	Illumina [11901634] (imputed)	N
1098	chr2	67297408	67297409	rs1833219	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2p14	ETAA1	rs1833219-?	0.72	8E-6	(Age 20-81 years)	1.32	[1.16-1.49]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1098	chr2	67302742	67302743	rs17032980	25710658	Diouf B	2015-02-24	JAMA	Association of an inherited genetic variant with vincristine-related peripheral neuropathy in children with acute lymphoblastic leukemia.	Vincristine-induced peripheral neuropathy in acute lymphoblastic leukemia	53 European ancestry cases with peripheral neuropathy, 156 cases without peripheral neuropathy, 10 African ancestry cases with peripheral neuropathy, 33 African ancestry cases without peripheral neuropathy, 1 Asian ancestry case with peripheral neuropathy, 1 Asian ancestry case without peripheral neuropathy, 14 Hispanic cases with peripheral neuropathy, 30 Hispanic cases without peripheral neuropathy, 8 cases with peripheral neuropathy, 15 cases without peripheral neuropathy	NA	2p14	ETAA1	rs17032980-?	NR	1E-8		3.17	[1.95-5.17]	Affymetrix [1576016] (imputed)	N
1098	chr2	67368779	67368780	rs6721279	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p14	MEIS1	rs6721279-?	NR	8E-8	(PC 36:1)	0.19244449	[0.12-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1099	chr2	67423661	67423662	rs115648813	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	2p14	NR	rs115648813-C	0.03026	2E-6		0.4252	[0.25-0.6] unit decrease	Illumina [10677593] (imputed)	N
1099	chr2	67453725	67453726	rs112332086	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	2p14	NR	rs112332086-T	NR	8E-6	(fixed effect)	1.09	[NR]	NR [6904914] (imputed)	N
1099	chr2	67456699	67456700	rs875037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p14		rs875037-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1099	chr2	67472544	67472545	rs2062204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs2062204-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1099	chr2	67478835	67478836	rs4671176	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2p14		rs4671176-T	NR	4E-7		1.074	[1.045-1.104]	Affymetrix [7846216] (imputed)	N
1099	chr2	67478948	67478949	rs4671789	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs4671789-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1100	chr2	67504660	67504661	rs79294676	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p14	LOC102800447	rs79294676-A	0.011363138	2E-7		1.5717803	[1.327074288-1.861609045]	Illumina [10439017] (imputed)	N
1100	chr2	67504660	67504661	rs79294676	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2p14	LOC102800447	rs79294676-A	0.011853736	4E-7		1.6454077	[1.357166959-1.994866039]	Illumina [10439017] (imputed)	N
1100	chr2	67510376	67510377	rs11692700	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p14	LOC102800447	rs11692700-C	0.030912376	6E-7		1.1985873	[1.116071723-1.287203553]	Illumina [10439017] (imputed)	N
1100	chr2	67561334	67561335	rs112898427	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p14	ETAA1	rs112898427-C	0.299591	3E-11		0.0103395	[0.0073-0.0134] unit increase	Affymetrix [12370749]	N
1100	chr2	67593802	67593803	rs962856	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	2p14	intergenic	rs962856-C	0.379	2E-8		1.12	[1.08-1.17]	Illumina [866891] (imputed)	N
1100	chr2	67601970	67601971	rs6739392	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist-hip ratio	up to 19,744 African American individuals	Up to 7,606 African American individuals	2p14	ETAA1	rs6739392-A	0.23	4E-6	(BMI_women)	0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
1100	chr2	67607134	67607135	rs4671797	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2p14	NR	rs4671797-A	0.41	2E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
1100	chr2	67622242	67622243	rs4671799	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p14	NR	rs4671799-G	0.6669	5E-11		0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1100	chr2	67623080	67623081	rs2902005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p14	ETAA1	rs2902005-A	NR	3E-8		0.0186215	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1100	chr2	67627711	67627712	rs116165775	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p14	ETAA1	rs116165775-T	0.010702979	4E-7		1.559825	[1.314077351-1.851530302]	Illumina [10439017] (imputed)	N
1101	chr2	67634002	67634003	rs12470785	33597508	Coignard J	2021-02-17	Nat Commun	A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers.	BRCA2 mutation in breast cancer	5,097 European ancestry cases, 57,725 European ancestry controls	NA	2p14	NR	rs12470785-G	0.3	3E-11		0.84	NR	Illumina [9043830] (imputed)	N
1101	chr2	67639768	67639769	rs1486134	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	2p14	intergenic, ETAA1	rs1486134-G	0.28	5E-9		1.13	[1.09-1.17]	Illumina [11381182] (imputed)	N
1101	chr2	67639768	67639769	rs1486134	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	2p14	ETAA1	rs1486134-G	0.275	3E-9		1.14	[1.09-1.19]	Illumina [866891] (imputed)	N
1101	chr2	67649767	67649768	rs62156695	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2p14		rs62156695-?	NR	5E-21				NR [~ 8900000] (imputed)	N
1101	chr2	67654433	67654434	rs18122	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	2p14	ETAA1	rs18122-G	0.175	5E-6	(AA, Women)	0.061	[0.036-0.086] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1101	chr2	67685403	67685404	rs56225803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p14		rs56225803-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1101	chr2	67685403	67685404	rs56225803	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs56225803-A	0.143163	4E-9		0.0262674	[0.018-0.035] unit decrease	NR [19129689] (imputed)	N
1101	chr2	67701288	67701289	rs55864010	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs55864010-A	0.092101646	1E-6		1.1116452	[1.065560809-1.159722642]	Illumina [10439017] (imputed)	N
1101	chr2	67701288	67701289	rs55864010	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs55864010-A	0.093972213	2E-6		1.1529757	[1.086679004-1.223317068]	Illumina [10439017] (imputed)	N
1101	chr2	67717408	67717409	rs75472612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs75472612-T	NR	9E-11		0.0333458	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67717408	67717409	rs75472612	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs75472612-T	NR	1E-10		0.033242	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67724600	67724601	rs1521047	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs1521047-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1101	chr2	67729254	67729255	rs10496150	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs10496150-G	0.496634	2E-10		0.0201446	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1101	chr2	67730415	67730416	rs74513896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs74513896-C	NR	2E-10		0.0308515	[0.021-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67730415	67730416	rs74513896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs74513896-C	NR	1E-10		0.0311746	[0.022-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67740213	67740214	rs116278575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs116278575-T	NR	3E-9		0.042567	[0.029-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67740213	67740214	rs116278575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs116278575-T	NR	2E-9		0.0428622	[0.029-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs17033702-C	0.6431	8E-9	(women)	0.0336	[0.022-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs17033702-C	0.6431	3E-8		0.0253	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	ETAA1	rs17033702-C	0.6446000000000001	1E-7	(women)	0.036	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	ETAA1	rs17033702-C	0.6446000000000001	1E-7	(women)	0.036	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	ETAA1	rs17033702-C	0.6431	3E-7		0.028	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs17033702-?	0.6431	5E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67743607	67743608	rs17033702	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs17033702-?	0.6431	1E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1101	chr2	67745583	67745584	rs75540582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs75540582-T	NR	5E-10		0.0177282	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1101	chr2	67746461	67746462	rs57485255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs57485255-A	NR	2E-9		0.02304	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
1101	chr2	67746461	67746462	rs57485255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs57485255-A	NR	6E-10		0.0236865	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
1101	chr2	67746616	67746617	rs62157933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs62157933-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1101	chr2	67749673	67749674	rs2860517	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2p14	LOC644838	rs2860517-T	0.404881605944713	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1101	chr2	67749673	67749674	rs2860517	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2p14	LOC644838	rs2860517-T	0.404881605944713	8E-9		0.021623781	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1101	chr2	67755321	67755321	rs61594789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs61594789-GA	NR	9E-14		0.0290638	[0.021-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67755321	67755321	rs61594789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs61594789-GA	NR	8E-14		0.0291102	[0.021-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1101	chr2	67755321	67755321	rs61594789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC007422.1	rs61594789-GA	NR	2E-8		0.0221523	[0.014-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1101	chr2	67758662	67758663	rs2683687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs2683687-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67767895	67767896	rs76279925	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs76279925-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67768339	67768340	rs62155324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1	rs62155324-A	NR	8E-9		0.0442991	[0.029-0.059] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67768339	67768340	rs62155324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1	rs62155324-A	NR	2E-9		0.0457994	[0.031-0.061] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67789405	67789406	rs11691270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs11691270-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67794451	67794452	rs76980472	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs76980472-C	0.017775557	1E-7		1.3714582	[1.220354853-1.541270862]	Illumina [10439017] (imputed)	N
1102	chr2	67795199	67795200	rs2270342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC007422.1, AC010987.5	rs2270342-A	NR	1E-12		0.0225526	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr2	67795199	67795200	rs2270342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC007422.1, AC010987.5	rs2270342-A	NR	2E-11		0.0214783	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1102	chr2	67795199	67795200	rs2270342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC007422.1, AC010987.5	rs2270342-A	NR	2E-11		0.0213736	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1102	chr2	67795548	67795549	rs2270344	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC007422.1, AC010987.5	rs2270344-G	NR	6E-13		0.022295	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr2	67823352	67823353	rs77443783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC010987.5	rs77443783-G	NR	4E-8		0.0183707	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr2	67823832	67823832	rs747498072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC010987.5	rs747498072-A	NR	6E-10		0.0225152	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67823832	67823832	rs747498072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC010987.5	rs747498072-A	NR	4E-10		0.022773	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67832418	67832419	rs12476693	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs12476693-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67832418	67832419	rs12476693	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs12476693-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67837552	67837553	rs2861685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p14		rs2861685-C	NR	2E-9		0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1102	chr2	67837552	67837553	rs2861685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p14		rs2861685-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1102	chr2	67837552	67837553	rs2861685	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p14	NA	rs2861685-T	0.5864	8E-18		0.0165	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1102	chr2	67837552	67837553	rs2861685	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p14	NA	rs2861685-T	0.5864	8E-18		0.0165	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
1102	chr2	67838684	67838685	rs2861690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p14	NR	rs2861690-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67841325	67841326	rs12477088	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p14		rs12477088-T	0.59	6E-11				NR [NR] (imputed)	N
1102	chr2	67841325	67841326	rs12477088	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p14		rs12477088-T	0.59	3E-14		0.011	% increase	NR [NR] (imputed)	N
1102	chr2	67841325	67841326	rs12477088	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p14	ETAA1	rs12477088-T	0.589752	5E-14		0.0104671	[0.0077-0.0132] unit increase	Affymetrix [12370749]	N
1102	chr2	67841325	67841326	rs12477088	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2p14	NR	rs12477088-C	0.4095	6E-16		0.020347761	[0.015-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1102	chr2	67842865	67842866	rs4362541	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	2p14	intergenic	rs4362541-A	NR	2E-10		1.0459232	[1.0319-1.0599]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1102	chr2	67844095	67844096	rs114165399	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs114165399-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67845738	67845739	rs2861694	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	2p14	NR	rs2861694-A	0.31	1E-10		1.04		NR [8546065] (imputed)	N
1102	chr2	67846287	67846288	rs4671193	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2p14	NR	rs4671193-T	0.3561	1E-22		0.0182	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1102	chr2	67846287	67846288	rs4671193	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2p14	NA	rs4671193-T	0.3562	5E-25		0.0191	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1102	chr2	67846287	67846288	rs4671193	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2p14	NR	rs4671193-T	0.3562	5E-25		0.0191	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
1102	chr2	67846726	67846727	rs2861695	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	2p14	NR	rs2861695-A	0.19	6E-9		0.11	unit increase	NR [2324712] (imputed)	N
1102	chr2	67848670	67848671	rs62156325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC010987.5	rs62156325-G	NR	2E-10		0.0282721	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67848670	67848671	rs62156325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC010987.5	rs62156325-G	NR	7E-11		0.0291298	[0.02-0.038] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67852161	67852162	rs192134906	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs192134906-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs7598674-G	0.6477999999999999	9E-8	(EA, women)	0.0296	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs7598674-G	0.6477999999999999	3E-9	(EA)	0.0254	[0.017-0.034] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	ETAA1	rs7598674-G	0.6515	4E-7	(EA, women)	0.0313	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2p14	ETAA1	rs7598674-G	0.6477999999999999	4E-8	(EA)	0.0264	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs7598674-?	0.6477999999999999	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852688	67852689	rs7598674	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2p14	ETAA1	rs7598674-?	0.6477999999999999	1E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC010987.5	rs6721459-G	NR	4E-12		0.0195295	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC010987.5	rs6721459-G	NR	4E-12		0.0196079	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC010987.5	rs6721459-G	NR	3E-8		0.0157445	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC010987.5	rs6721459-G	NR	1E-8		0.0162526	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs6721459-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs6721459-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs6721459-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1102	chr2	67852835	67852836	rs6721459	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2p14	NR	rs6721459-A	0.527	4E-23		0.0178	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1102	chr2	67853012	67853013	rs7598832	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2p14	NR	rs7598832-C	0.67	5E-25		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
1102	chr2	67853012	67853013	rs7598832	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2p14	NR	rs7598832-C	0.67	5E-8				Affymetrix [2446094] (imputed)	N
1102	chr2	67853956	67853957	rs4591326	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2p14	NR	rs4591326-C	0.278	2E-23		0.0196	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1102	chr2	67855331	67855332	rs2861699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2p14	AC010987.5	rs2861699-T	NR	6E-15		0.0232471	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr2	67855331	67855332	rs2861699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2p14	AC010987.5	rs2861699-T	NR	1E-14		0.0229277	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1102	chr2	67855331	67855332	rs2861699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2p14	AC010987.5	rs2861699-T	NR	2E-12		0.0212331	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1102	chr2	67855331	67855332	rs2861699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2p14	AC010987.5	rs2861699-T	NR	1E-12		0.0213305	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1102	chr2	67856489	67856490	rs6546324	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p14	ETAA1	rs6546324-A	0.31	3E-8		1.08	1.05-1.11	Affymetrix, Illumina [up to 6979035] (imputed)	N
1102	chr2	67856489	67856490	rs6546324	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2p14	ETAA1	rs6546324-A	0.31	3E-7	(EA)	1.08	1.05-1.11	Affymetrix, Illumina [up to 6979035] (imputed)	N
1102	chr2	67864674	67864675	rs4141819	23104006	Nyholt DR	2012-10-28	Nat Genet	Genome-wide association meta-analysis identifies new endometriosis risk loci.	Endometriosis	3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls	1,044 Japanese ancestry, 4,017 Japanese ancestry controls	2p14	NR	rs4141819-C	0.309	9E-8		1.15	[1.09-1.21]	Illumina [407632]	N
1102	chr2	67865964	67865965	rs10196304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p14		rs10196304-C	NR	9E-14		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1102	chr2	67865964	67865965	rs10196304	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p14	NA	rs10196304-A	0.5958	4E-16		0.0141	[0.011-0.017] unit increase	NR [~ 27400000] (imputed)	N
1102	chr2	67868411	67868412	rs1430788	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease	54,854 European ancestry cases, 401,473 European ancestry controls	NA	2p14	NR	rs1430788-C	0.31	8E-9		1.04	[NR]	NR [8546065] (imputed)	N
1102	chr2	67874552	67874553	rs10197255	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p14	LINC01812	rs10197255-A	0.4045	5E-9		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1102	chr2	67876603	67876603	rs372640137	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2p14	AC010987.5	rs372640137-TGAAAACC	NR	3E-9		0.017454	[0.012-0.023] unit increase	Affymetrix [321788] (imputed)	N
1102	chr2	67878327	67878328	rs1430780	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2p14	NR	rs1430780-C	0.677	3E-8		0.0273	[0.018-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1102	chr2	67881756	67881757	rs9712235	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	2p14	NR	rs9712235-?	NR	2E-7	(mixed effect)			Illumina [~ 9700000] (imputed)	N
1102	chr2	67881756	67881757	rs9712235	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	2p14	NR	rs9712235-G	0.26	5E-8		1.04	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1102	chr2	67881756	67881757	rs9712235	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p14	NR	rs9712235-A	0.7397	7E-7	(EA)	0.0357	[0.022-0.05] unit decrease	Illumina [~ 11800000] (imputed)	N
1103	chr2	67900115	67900116	rs2861709	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2p14	intergenic	rs2861709-?	0.05910000000000004	2E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [8494288] (imputed)	N
1103	chr2	67915739	67915740	rs75442551	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2p14	NR	rs75442551-A	0.03	3E-6		1.27	[1.17-1.37]	Illumina [8468885] (imputed)	N
1103	chr2	67916874	67916875	rs11675008	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 49)	3,566 European ancestry individuals	4,680 European ancestry individuals	2p14		rs11675008-A	0.376191812	3E-8				Illumina [7417619] (imputed)	N
1103	chr2	67923477	67923478	rs34089869	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	2p14	NR	rs34089869-C	NR	5E-6		0.2129	[0.12-0.3] SD units decrease	NR [10700000] (imputed)	N
1103	chr2	67927292	67927293	rs6747212	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs6747212-A	0.23335	3E-9		0.0215388	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
1103	chr2	67941475	67941476	rs10191401	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p14	NR	rs10191401-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1103	chr2	67942479	67942480	rs724568	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	2p14	BC043421	rs724568-C	0.36	5E-6		1.17	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
1103	chr2	67943398	67943399	rs35942723	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	2p14	NR	rs35942723-T	NR	6E-8		5.43	z score increase	NR [9015039] (imputed)	N
1103	chr2	67945927	67945928	rs55869381	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs55869381-G	0.00513089	1E-9		0.131022	[0.089-0.173] unit decrease	NR [19129689] (imputed)	N
1103	chr2	67967288	67967289	rs151124926	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs151124926-T	0.018181188	8E-7		1.3753732	[1.211638217-1.561234682]	Illumina [10439017] (imputed)	N
1103	chr2	67967288	67967289	rs151124926	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs151124926-T	0.020451675	1E-7		1.3037766	[1.182231664-1.437817574]	Illumina [10439017] (imputed)	N
1103	chr2	67967288	67967289	rs151124926	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2p14	ETAA1, LOC101927701	rs151124926-T	0.02070034	3E-6		1.4010489	[1.217470928-1.612307914]	Illumina [10439017] (imputed)	N
1103	chr2	67973886	67973887	rs13432159	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	2p14	intergenic	rs13432159-G	0.08	9E-8	(Sertraline, General side effects)			Affymetrix [421789]	N
1103	chr2	67976787	67976788	rs6724422	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	2p14	intergenic	rs6724422-T	0.06	4E-7	(Sertraline, General side effects)			Affymetrix [421789]	N
1103	chr2	67977613	67977614	rs1367469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p14		rs1367469-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1103	chr2	67982278	67982278	rs3036802	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p14	NR	rs3036802-ACAT	0.7844	3E-6	(EA)	0.0426	[0.025-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
1103	chr2	67985468	67985469	rs2902029	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p14	NR	rs2902029-A	0.05401	4E-10	(CIITA)	0.2354	NR unit increase	Illumina [1671387] (imputed)	N
1104	chr2	68069889	68069890	rs1820989	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	2p14	NR	rs1820989-A	0.47	3E-32		1.13	[1.11-1.15]	Affymetrix, Illumina [15838848] (imputed)	N
1104	chr2	68069889	68069890	rs1820989	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	2p14	MEIS1, C1D, APLF	rs1820989-A	0.47	1E-58		1.1363636	[1.11-1.15]	Affymetrix, Illumina [6864281] (imputed)	N
1104	chr2	68070224	68070225	rs6747972	21779176	Winkelmann J	2011-07-14	PLoS Genet	Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1.	Restless legs syndrome	922 European ancestry cases, 1,526 European ancestry controls	3,935 European ancestry cases, 5,754 European ancestry controls	2p14	intergenic	rs6747972-A	0.44	9E-11		1.23	[1.16-1.31]	Affymetrix [301406]	N
1104	chr2	68071989	68071990	rs12991815	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p14	NR	rs12991815-C	0.4241	3E-11		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1104	chr2	68077706	68077707	rs2861754	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2p14	LINC01812, C1D	rs2861754-A	0.3603	2E-6		0.1301	[0.077-0.184] unit increase	NR [NR] (imputed)	N
1104	chr2	68078848	68078849	rs6546334	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p14	LINC01812	rs6546334-C	0.653648	4E-20		0.0177204	[0.014-0.022] unit increase	NR [13737936] (imputed)	N
1104	chr2	68078848	68078849	rs6546334	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p14		rs6546334-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1104	chr2	68078848	68078849	rs6546334	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2p14		rs6546334-T	0.35	7E-15		0.16	[0.12-0.2] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1104	chr2	68078848	68078849	rs6546334	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p14	NR	rs6546334-T	NR	2E-6		0.03	NR unit decrease	NR [NR] (imputed)	N
1104	chr2	68078848	68078849	rs6546334	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2p14	ETAA1, C1D	rs6546334-?	NR	6E-12		1.1750882	[1.12-1.23]	Illumina [13436641] (imputed)	N
1104	chr2	68079210	68079211	rs7584373	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2p14	LINC01812, C1D	rs7584373-A	0.35	2E-8		0.38	[0.24-0.52] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1104	chr2	68079210	68079211	rs7584373	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2p14	LINC01812, C1D	rs7584373-A	0.3511	1E-6		0.335	[0.2-0.47] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1104	chr2	68080037	68080038	rs10469955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2p14		rs10469955-?	NR	9E-42				NR [~ 8900000] (imputed)	N
1104	chr2	68081308	68081309	rs745977	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs745977-A	0.450066	3E-45		0.0445394	[0.038-0.051] unit decrease	NR [19129689] (imputed)	N
1104	chr2	68081308	68081309	rs745977	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p14	NR	rs745977-C	NR	9E-9		0.0356585	NR unit increase	NR [NR] (imputed)	N
1104	chr2	68081339	68081340	rs745976	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p14		rs745976-?	NR	2E-19		0.0186948	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1104	chr2	68105835	68105836	rs7565329	27802415	Salvi E	2016-10-31	Hypertension	Genome-Wide and Gene-Based Meta-Analyses Identify Novel Loci Influencing Blood Pressure Response to Hydrochlorothiazide.	Systolic blood pressure response to hydrochlorothiazide in hypertension	1,739 European ancestry individuals	430 African American individuals	2p14	ETAA1, C1D	rs7565329-T	0.09	7E-6	(EA)	1.7	[NR] mmHg decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1104	chr2	68106565	68106566	rs13416342	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p14	NR	rs13416342-G	0.428	6E-6	(EA)	0.0285	[0.016-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
1104	chr2	68107868	68107869	rs11679294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs11679294-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1104	chr2	68114897	68114898	rs2902041	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	2p14	NR	rs2902041-?	NR	2E-6		0.0491	[0.029-0.069] unit increase	Illumina [~ 7800000] (imputed)	N
1104	chr2	68114897	68114898	rs2902041	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	2p14	NR	rs2902041-?	NR	2E-6		0.0672	[0.04-0.095] unit increase	Illumina [~ 7800000] (imputed)	N
1104	chr2	68124205	68124206	rs79154414	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	2p14	C1D	rs79154414-T	0.01	5E-8		6.2	[2.96-13.0]	Affymetrix [426344]	N
1104	chr2	68151618	68151619	rs6741945	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p14	NR	rs6741945-T	NR	9E-9		0.0565913	NR unit increase	NR [NR] (imputed)	N
1105	chr2	68160475	68160476	rs6756875	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p14	NR	rs6756875-A	NR	7E-13		0.0498838	NR unit decrease	NR [NR] (imputed)	N
1105	chr2	68162545	68162546	rs62146540	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2p14	intergenic	rs62146540-C	NR	8E-12		0.108173	[0.077-0.139] unit decrease	Affymetrix [27512692] (imputed)	N
1105	chr2	68163159	68163160	rs146081883	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	2p14	NR	rs146081883-?	NR	2E-6		1.9596248	[1.49-2.58]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1105	chr2	68165195	68165196	rs6726612	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs6726612-G	0.270091	1E-20		0.0339686	[0.027-0.041] unit decrease	NR [19129689] (imputed)	N
1105	chr2	68165397	68165398	rs2174135	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p14	NR	rs2174135-T	0.167719	1E-11		0.0290549	[0.021-0.037] unit increase	NR [19129689] (imputed)	N
1105	chr2	68237912	68237913	rs146109287	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	2p14	intergenic	rs146109287-C	NR	2E-7	(Fixed effect)	0.1	[0.061-0.139] unit increase	Illumina [4736131] (imputed)	N
1106	chr2	68296214	68296215	rs191524990	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	2p14	C1D	rs191524990-T	0.004	1E-6		6.4	[3.00-13.64]	Illumina [8672852] (imputed)	N
1106	chr2	68350729	68350730	rs79237970	31754133	Singh S	2019-11-21	Sci Rep	Genome Wide Analysis Approach Suggests Chromosome 2 Locus to be Associated with Thiazide and Thiazide Like-Diuretics Blood Pressure Response.	Diastolic blood pressure response to thiazide and thiazide-like diuretics in hypertension	290 African American individuals, 397 European ancestry individuals	NA	2p14	WDR92	rs79237970-T	NR	8E-9	(AA)	12.02	NR unit decrease	Illumina [NR] (imputed)	N
1106	chr2	68354726	68354727	rs6757906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p14		rs6757906-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1106	chr2	68354935	68354936	rs76517946	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p14	WDR92	rs76517946-A	0.0814	2E-26		0.0368	[0.03-0.044] unit decrease	Affymetrix [18391927] (imputed)	N
1106	chr2	68354935	68354936	rs76517946	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p14		rs76517946-?	NR	2E-27				NR [~ 8900000] (imputed)	N
1106	chr2	68359896	68359897	rs4078978	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2p14	WDR92	rs4078978-A		2E-18	(AA)			Illumina [NR]	N
1106	chr2	68365312	68365313	rs190390792	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lung cancer	2,485 European ancestry cases, 410,350 European ancestry controls	NA	2p14		rs190390792-G	0.037659	5E-7		1.4074596	NR	Affymetrix [7846216] (imputed)	N
1106	chr2	68385096	68385097	rs2044693	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p14		rs2044693-A	0.3549	2E-13		0.16710487	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1106	chr2	68385096	68385097	rs2044693	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p14		rs2044693-A	0.3549	1E-12		0.11613856	[0.084-0.148] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1106	chr2	68385096	68385097	rs2044693	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	2p14		rs2044693-A	0.3561	1E-9		6.1101	z score decrease	Affymetrix, Illumina [239843] (imputed)	N
1106	chr2	68386025	68386026	rs78556816	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p14	NR	rs78556816-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1107	chr2	68423217	68423218	rs12052801	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p14	PPP3R1	rs12052801-A	NR	6E-6	(East Asian)	1.0799136	[1.05-1.11]	Illumina [6627481] (imputed)	N
1107	chr2	68423217	68423218	rs12052801	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p14	intergenic	rs12052801-G	NR	9E-7	(Chinese)	1.1013216	[1.06-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1107	chr2	68425403	68425404	rs116211567	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p14		rs116211567-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1107	chr2	68425426	68425427	rs62641636	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2p14	NR	rs62641636-?		7E-10		0.0144237	[0.0098-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1107	chr2	68425453	68425454	rs61247217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2p14	RP11-474G23.1, PPP3R1	rs61247217-C	NR	5E-8		0.0181481	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
1107	chr2	68445353	68445354	rs2122127	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2p14	PPP3R1	rs2122127-A	0.607895	6E-9	(EA)	0.00716293	[0.0048-0.0096] unit increase	Affymetrix [~ 8800000] (imputed)	N
1107	chr2	68470424	68470425	rs12465425	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p14	PPP3R1, ENSG00000273398	rs12465425-T	NR	1E-9		0.019038394	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1107	chr2	68473754	68473755	rs59663815	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p14	PPP3R1, ENSG00000273398	rs59663815-T	NR	8E-9		5.775	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1107	chr2	68482326	68482327	rs2902065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2p14	NR	rs2902065-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1107	chr2	68482326	68482327	rs2902065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p14	NR	rs2902065-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1107	chr2	68482326	68482327	rs2902065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2p14		rs2902065-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1107	chr2	68487108	68487109	rs7569914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	2p14		rs7569914-G	NR	4E-36		0.1424	[0.12-0.16] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1107	chr2	68489220	68489221	rs2861819	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	2p14		rs2861819-C	0.655215	9E-27		0.0039509	[0.0032-0.0047] unit increase	Affymetrix [10829469] (imputed)	N
1107	chr2	68489220	68489221	rs2861819	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	2p14	NR	rs2861819-C	0.65	1E-23		0.159	[0.13-0.19] unit increase	Affymetrix [10972371] (imputed)	N
1107	chr2	68495001	68495002	rs2120335	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p14	PPP3R1	rs2120335-A	0.406	8E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p14	CNRIP1	rs6731373-A	0.342	4E-9		0.0073	[0.0049-0.0097] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p14	CNRIP1	rs6731373-A	0.3309	5E-10		0.1815	[0.12-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2p14	AC017083.3	rs6731373-A	0.3447	2E-14		0.1434	[0.11-0.18] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p14	Intergenic	rs6731373-A	0.329	2E-8	(MTAG)	0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p14	Intergenic	rs6731373-A	0.329	2E-13	(MTAG)	0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p14		rs6731373-A	0.339	1E-14		0.0115	[0.0086-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p14	Intergenic	rs6731373-A	0.339	7E-17	(MTAG)	0.0116	[0.0089-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p14	Intergenic	rs6731373-A	0.3555	2E-11	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1107	chr2	68503043	68503044	rs6731373	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p14	ENSG00000221443	rs6731373-A	NR	5E-9		0.018343568	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1108	chr2	68570771	68570772	rs9309413	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	2p14	PLEK	rs9309413-?	0.45	2E-9	(SM)			Affymetrix [187454]	N
1108	chr2	68578057	68578058	rs13033725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p14		rs13033725-G	0.331324	3E-22		0.0234611	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr2	68579930	68579931	rs7578047	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	2p14	PLEK	rs7578047-C	0.142	4E-6	(Reaction)	0.22	[NR] unit decrease	Affymetrix [677643]	N
1108	chr2	68587476	68587477	rs7595717	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2p14	PLEK	rs7595717-A	0.27	1E-13		1.1		Illumina [161311]	N
1108	chr2	68598954	68598955	rs17035378	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2p14	PLEK	rs17035378-?	0.72	8E-9		1.14	[1.09-1.19]	Illumina [292387]	N
1108	chr2	68615545	68615546	rs34338164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p14		rs34338164-C	NR	2E-21		0.1209	[0.096-0.146] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	2p14		rs34338164-C	NR	7E-9		0.0624	[0.041-0.084] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	2p14		rs34338164-?	NR	4E-11		0.069617	[0.049-0.09] unit decrease	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	2p14		rs34338164-?	NR	2E-35		0.121861	[0.1-0.14] unit increase	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	2p14		rs34338164-?	NR	7E-18		0.0892568	[0.069-0.11] unit decrease	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	2p14		rs34338164-?	NR	3E-33		0.107535	[0.089-0.126] unit decrease	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	2p14		rs34338164-?	NR	9E-26		0.111548	[0.091-0.132] unit decrease	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	2p14		rs34338164-?	NR	1E-10		0.0645876	[0.044-0.085] unit decrease	NR [9800000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00882099999999997	2E-12		0.0827096	[0.06-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00884499999999999	1E-27		0.13116759	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00884200000000002	2E-21		0.1143972	[0.091-0.138] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00882899999999998	7E-11		0.07695744	[0.054-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00883699999999998	1E-14		0.091026336	[0.068-0.114] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00884200000000002	2E-21		0.1135879	[0.09-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00882899999999998	6E-28		0.12886444	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2p14	PLEK	rs34338164-C	0.00882099999999997	4E-9		0.070097014	[0.047-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs34338164-C	0.00870522	1E-13				Affymetrix, Illumina [24649327] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p14	NR	rs34338164-C	0.009001	3E-15		0.076924	[0.058-0.096] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs34338164-A	0.991354	1E-22				Affymetrix, Illumina [17210439] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p14	NR	rs34338164-A	0.991082	6E-26		0.10701	[0.087-0.127] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs34338164-C	0.00865142	4E-32				Affymetrix, Illumina [23472807] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p14	NR	rs34338164-C	0.00894	3E-34		0.127149	[0.11-0.15] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2p14	NR	rs34338164-C	0.008929	2E-9		0.065546	[0.044-0.087] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p14		rs34338164-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p14		rs34338164-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p14	PLEK	rs34338164-C	0.009	2E-14		0.15026	[0.11-0.19] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr2	68615545	68615546	rs34338164	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2p14	PLEK	rs34338164-C	0.009	3E-13		0.1410288	[0.1-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr2	68619980	68619981	rs1867312	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	2p14	PLEK	rs1867312-C	NR	3E-10		1.06	[1.04-1.09]	Affymetrix, Illumina [12923718] (imputed)	N
1108	chr2	68619980	68619981	rs1867312	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	2p14	NR	rs1867312-?	NR	9E-10		0.0616	[0.042-0.081] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1108	chr2	68621337	68621338	rs17530191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p14	PLEK	rs17530191-T	0.322319	2E-12		0.0148541	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68621666	68621666	rs35287888	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p14	NR	rs35287888-I	0.321033	4E-12		0.014737	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1108	chr2	68621841	68621842	rs13010285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p14	NR	rs13010285-T	0.295335	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
1108	chr2	68622148	68622150	rs60862347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p14	PLEK	rs60862347-C	0.443358	8E-13		0.016037699	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1108	chr2	68624609	68624610	rs144214859	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	2p14	NR	rs144214859-?	0.02	3E-7	(EA)	2.58	[1.80-3.70]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1108	chr2	68626997	68626998	rs187013403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p14	Intergenic	rs187013403-C	1.0	4E-6	(AA)	1.966	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68627734	68627735	rs13014766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p13.3		rs13014766-T	NR	2E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1108	chr2	68630555	68630556	rs187803700	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs187803700-T	1.0	3E-6	(AA)	1.988	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68638683	68638684	rs181794654	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs181794654-G	1.0	3E-6	(AA)	2.022	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68638897	68638898	rs147031024	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs147031024-T	1.0	3E-6	(AA)	2.023	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68639312	68639313	rs13011075	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p13.3	intergenic	rs13011075-C	0.3154	2E-9		0.02267051	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1108	chr2	68639715	68639716	rs187068710	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs187068710-T	1.0	2E-6	(AA)	2.034	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68642419	68642420	rs142609709	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs142609709-T	1.0	2E-6	(AA)	2.066	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68646535	68646536	rs12622670	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p13.3	PLEK	rs12622670-T	NR	5E-16		1.0901	NR	Affymetrix, Illumina [8278136] (imputed)	N
1108	chr2	68646782	68646783	rs7592330	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	2p13.3	FBXO48, C2orf13, PLEK	rs7592330-A	0.56	2E-7		1.15	[NR]	Affymetrix, Illumina [2529394]	N
1108	chr2	68646864	68646865	rs189505973	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.3	Intergenic	rs189505973-G	1.0	2E-6	(AA)	2.127	NR unit increase	Illumina [NR] (imputed)	N
1108	chr2	68647094	68647095	rs7595037	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Follicular lymphoma or multiple sclerosis	2,686 European ancestry follicular lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 25,256 European ancestry controls	NA	2p13.3	Intergenic	rs7595037-?	NR	9E-8		1.0833063		Illumina [~ 460000] (imputed)	N
1108	chr2	68647094	68647095	rs7595037	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2p13.3	PLEK	rs7595037-A	NR	5E-11		1.11	[1.1-1.12]	Illumina [465434]	N
1108	chr2	68650996	68650997	rs6759808	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	LOC391383	rs6759808-G	0.194	4E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
1108	chr2	68652579	68652580	rs11126185	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	LOC391383	rs11126185-G	0.188	5E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1109	chr2	68683182	68683183	rs112632203	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p13.3	NR	rs112632203-C	0.975929	2E-12		0.043445	[0.031-0.056] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1109	chr2	68694363	68694364	rs116640044	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	2p13.3	NR	rs116640044-T	0.00359425	2E-8		0.0691	[0.045-0.093] unit decrease	Affymetrix [23037915] (imputed)	N
1109	chr2	68733388	68733389	rs10208940	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	2p13.3	APLF	rs10208940-C	0.14	1E-6		0.083	[0.05-0.116] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1109	chr2	68743147	68743148	rs190855339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2p13.3		rs190855339-T	NR	1E-13		0.1035	[0.076-0.131] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1109	chr2	68767610	68767611	rs141250842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p13.3		rs141250842-G	NR	1E-10		0.0803	[0.056-0.105] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1110	chr2	68819968	68819969	rs112706954	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs112706954-A	0.976791	6E-11				Affymetrix, Illumina [22063850] (imputed)	N
1110	chr2	68938814	68938815	rs4854494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2p13.3		rs4854494-G	NR	1E-8		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1110	chr2	68939498	68939499	rs4854444	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2p13.3	ARHGAP25	rs4854444-T	0.7363	1E-6		0.0059	[0.003-0.0088] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1110	chr2	68939683	68939684	rs4854446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p13.3	ARHGAP25	rs4854446-A	0.282125	4E-9		0.014593351	[0.0097-0.0194] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	68953565	68953566	rs11686262	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p13.3	NR	rs11686262-?	NR	3E-8		4850.0254	NR unit decrease	Illumina [2379855]	N
1111	chr2	68962136	68962137	rs10048745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p13.3		rs10048745-A	NR	3E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p13.3		rs10048745-A	NR	4E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	2p13.3		rs10048745-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p13.3	NR	rs10048745-A	NR	5E-12		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.256194	3E-31		0.030269703	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.256157	5E-16		0.021126818	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.256228	2E-12		0.017961377	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.256177	2E-9		0.015371912	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.256215	1E-15		0.02042342	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs10048745-A	0.233443	3E-28				Affymetrix, Illumina [24588908] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p13.3	NR	rs10048745-A	0.256916	4E-29		0.023674	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs10048745-A	0.242227	4E-10				Affymetrix, Illumina [23114412] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p13.3	NR	rs10048745-A	0.256912	1E-11		0.014998	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.3		rs10048745-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.26	4E-8		0.0503	[0.032-0.068] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p13.3	NR	rs10048745-A	0.2477	6E-9		0.0389	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.2476	2E-8	(European)	0.0412	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.2596	5E-21		0.04020253	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1111	chr2	68962136	68962137	rs10048745	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p13.3	ARHGAP25	rs10048745-A	0.2597	5E-12		0.02934766	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1111	chr2	68973931	68973932	rs144481999	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	2p13.3	ARHGAP25	rs144481999-T	NR	4E-8		0.079	[0.052-0.106] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1111	chr2	68977253	68977254	rs13426364	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	ARHGAP25	rs13426364-C	0.7153125	9E-6	(ARHGAP25, 11333_82_3)	0.1193343	[0.067-0.172] unit increase	Illumina [> 1000000] (imputed)	N
1111	chr2	68979140	68979141	rs2280246	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p13.3	ARHGAP25	rs2280246-A	0.695665	4E-15		0.00198869	[0.0015-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
1111	chr2	68979301	68979302	rs2280244	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p13.3	ARHGAP25	rs2280244-A	0.3	7E-9		5.8	z-score increase	Affymetrix [4311822] (imputed)	N
1111	chr2	68986084	68986085	rs72828888	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Total cholesterol levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	2p13.3	Intergenic	rs72828888-G	NR	1E-5		2.97739	[1.7-4.25] unit increase	Illumina [NR] (imputed)	N
1111	chr2	68995388	68995389	rs12232891	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARHGAP25	rs12232891-?	NR	9E-12	(male)	2.71747	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1111	chr2	68997152	68997153	rs10196674	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p13.3	ARHGAP25	rs10196674-A	0.678407	2E-11		0.0132771	[0.0094-0.0171] unit increase	NR [13737936] (imputed)	N
1111	chr2	68997152	68997153	rs10196674	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p13.3		rs10196674-?	NR	4E-10		0.0130144	[0.0087-0.0174] unit increase	Affymetrix [20259828] (imputed)	N
1111	chr2	69010556	69010557	rs2311412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p13.3		rs2311412-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1111	chr2	69025527	69025528	rs55963884	29535370	Kleinstein SE	2018-02-28	Genes Immun	Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2).	Virologic severity in Herpes simplex virus type 2 infection	223 European ancestry individuals	NA	2p13.3	ARHGAP25	rs55963884-?	NR	1E-6				Illumina [1539908]	N
1111	chr2	69033582	69033583	rs115522963	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	2p13.3	NR	rs115522963-T	0.003	3E-6		1.157	[0.67-1.65] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1111	chr2	69040503	69040504	rs61758703	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	2p13.3		rs61758703-?	NR	2E-20		0.105578	[0.083-0.128] unit increase	NR [9800000] (imputed)	N
1111	chr2	69040503	69040504	rs61758703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p13.3	ARHGAP25	rs61758703-A	0.00717800000000002	4E-15		0.10534265	[0.079-0.132] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	69040503	69040504	rs61758703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2p13.3	ARHGAP25	rs61758703-A	0.00717299999999999	1E-19		0.12160365	[0.095-0.148] unit increase	Affymetrix [93095623] (imputed)	N
1111	chr2	69040503	69040504	rs61758703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs61758703-G	0.993184	4E-25				Affymetrix, Illumina [23467995] (imputed)	N
1111	chr2	69040503	69040504	rs61758703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2p13.3	NR	rs61758703-G	0.992958	8E-27		0.122737	[0.1-0.15] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1111	chr2	69063908	69063909	rs10496166	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p13.3	intergenic	rs10496166-A	0.13	4E-6		0.18	[0.10-0.26] unit increase	Illumina [~ 318327]	N
1111	chr2	69065840	69065841	rs12052761	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2p13.3	AC097495.2	rs12052761-G	0.6062000000000001	4E-12		0.1229	[0.088-0.158] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1112	chr2	69088930	69088931	rs3833578	33393196	Soliai M	2021-01-03	Int Forum Allergy Rhinol	Two-stage genome-wide association study of chronic rhinosinusitis and disease subphenotypes highlights mucosal immunity contributing to risk.	Chronic rhinosinusitis	483 European ancestry cases, 2,057 European ancestry controls	NA	2p13.3	LINC01888, BMP10	rs3833578-TA	0.061	3E-6		0.3733	[NR]	Illumina [4528849] (imputed)	N
1112	chr2	69095151	69095152	rs2312078	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p13.3	NR	rs2312078-G	0.421	9E-8	(IFNalpha_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
1112	chr2	69142266	69142267	rs13425414	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-822 sp000432855 abundance in stool	5,959 Finnish ancestry individuals	NA	2p13.3		rs13425414-C	0.140976	9E-10		0.0898691	[0.061-0.119] unit increase	Illumina [7980478] (imputed)	N
1112	chr2	69142266	69142267	rs13425414	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-822 abundance in stool	5,959 Finnish ancestry individuals	NA	2p13.3		rs13425414-C	0.140976	7E-9		0.0930105	[0.062-0.125] unit increase	Illumina [7980478] (imputed)	N
1112	chr2	69154582	69154583	rs13008230	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	NR	rs13008230-T	0.973125	9E-12	(TFF1, 9185_15_3)	0.5224981	[0.37-0.67] unit decrease	Illumina [> 1000000] (imputed)	N
1112	chr2	69154582	69154583	rs13008230	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	NR	rs13008230-T	0.973125	3E-34	(GKN2, 6416_8_3)	0.9421742	[0.79-1.09] unit increase	Illumina [> 1000000] (imputed)	N
1112	chr2	69158119	69158120	rs6705747	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	2p13.3	intergenic	rs6705747-?	0.294	1E-7	(unadjusted)		[NR]	Illumina [625127]	N
1112	chr2	69171608	69171609	rs12990985	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF1	5,368 Icelandic ancestry individuals	NA	2p13.3		rs12990985-C	0.02077	4E-18		0.583556	[0.45-0.72] unit increase	Illumina [7506463] (imputed)	N
1112	chr2	69177268	69177269	rs62133344	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF1	5,368 Icelandic ancestry individuals	NA	2p13.3		rs62133344-A	0.04721	2E-27		0.483945	[0.4-0.57] unit increase	Illumina [7506463] (imputed)	N
1112	chr2	69177268	69177269	rs62133344	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GKN2	5,367 Icelandic ancestry individuals	NA	2p13.3		rs62133344-A	0.04721	6E-99		0.923539	[0.84-1.01] unit decrease	Illumina [7506463] (imputed)	N
1112	chr2	69198387	69198388	rs4254535	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	2p13.3	NR	rs4254535-?	NR	5E-6		1.12	[NR]	Illumina [511919]	N
1113	chr2	69220795	69220796	rs68079474	33937227	Zhang W	2021-04-16	Front Cell Dev Biol	Detecting Gene-Environment Interaction for Maternal Exposures Using Case-Parent Trios Ascertained Through a Case With Non-Syndromic Orofacial Cleft.	Orofacial cleft x maternal periconceptional multivitamin use interaction (1df)	661 European ancestry exposed trios, 328 European ancestry unexposed trios, 293 Asian ancestry exposed trios, 805 Asian ancestry unexposed trios, 260 Latin American exposed trios, 140 Latin American unexposed trios	NA	2p13.3	ANTXR1	rs68079474-?	NR	1E-6				Illumina [up to 6762077] (imputed)	N
1113	chr2	69243935	69243936	rs11693609	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GKN2	5,367 Icelandic ancestry individuals	NA	2p13.3		rs11693609-C	0.01918	4E-11		0.463243	[0.33-0.6] unit decrease	Illumina [7506463] (imputed)	N
1113	chr2	69250631	69250632	rs66686620	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p13.3	NR	rs66686620-A	0.1433	1E-7	(EA)	0.0469	[0.029-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
1113	chr2	69287942	69287943	rs4315565	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2p13.3	ANTXR1	rs4315565-A	0.20	1E-8		0.059	[0.039-0.079] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1113	chr2	69299165	69299166	rs68146531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p13.3	ANTXR1	rs68146531-C	NR	1E-10		0.0180307	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1113	chr2	69313772	69313773	rs4854545	33745150	de Coo A	2021-03-21	J Clin Periodontol	Genome-wide association study of stage III/IV grade C periodontitis (former aggressive periodontitis) in a Spanish population.	Periodontitis (stage III/IV grade C)	465 Spanish ancestry cases, 1,179 Spanish ancestry controls	NA	2p13.3	ANTXR1	rs4854545-G	0.009	3E-6		4.34	[2.34-8.02]	Affymetrix [645639] (imputed)	N
1113	chr2	69326601	69326602	rs7600244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs7600244-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1113	chr2	69328217	69328218	rs1106518	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p13.3	ANTXR1	rs1106518-A	NR	9E-11		0.0210001	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1113	chr2	69328388	69328389	rs4076190	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	2p13.3		rs4076190-?	NR	3E-6		0.4583		Illumina [5932083] (imputed)	N
1113	chr2	69330117	69330118	rs6710260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p13.3		rs6710260-G	NR	3E-21		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1113	chr2	69330283	69330284	rs4241349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p13.3		rs4241349-A	0.706311	2E-12		0.0153698	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
1113	chr2	69330283	69330284	rs4241349	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.3	ANTXR1	rs4241349-?	NR	3E-10		0.019539136	[0.013-0.026] unit decrease	Illumina [27896057] (imputed)	N
1114	chr2	69357035	69357036	rs11685794	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.3	ANTXR1	rs11685794-?	NR	9E-9		0.017304497	[0.011-0.023] unit increase	Illumina [27896057] (imputed)	N
1114	chr2	69365797	69365798	rs7561207	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	2p13.3	ANTXR1	rs7561207-?	NR	4E-6	(females)	2.1267998		Affymetrix, Illumina [2928658] (imputed)	N
1114	chr2	69378069	69378070	rs6711815	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.3	ANTXR1	rs6711815-C	0.1474	3E-9		0.016	[0.011-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1114	chr2	69392127	69392128	rs4602255	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	2p13.3	NR	rs4602255-A	0.45	2E-9		1.04	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1114	chr2	69393712	69393713	rs12620093	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2p13.3	NR	rs12620093-?		6E-6	(LPA)	0.377	[NR] unit increase	Illumina [NR]	N
1114	chr2	69407719	69407720	rs10173269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p13.3		rs10173269-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1114	chr2	69407719	69407720	rs10173269	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p13.3	ANTXR1	rs10173269-T	0.5385	5E-12		0.092	[0.065-0.119] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	2p13.3	ANTXR1	rs6732795-A	NR	1E-8		0.0412	unit decrease	Illumina [15409056] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2p13.3	NR	rs6732795-C		8E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
1114	chr2	69411516	69411517	rs6732795	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2p13.3	ANTXR1	rs6732795-A	0.61	2E-11				Affymetrix, Illumina [8002429] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2p13.3	ANTXR1	rs6732795-?	NR	3E-11		0.0871	[0.061-0.113] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	2p13.3	ANTXR1	rs6732795-?	NR	2E-6		1.0780997	[1.05-1.11]	Affymetrix [up to 40000000] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2p13.3	ANTXR1	rs6732795-A	0.6093	9E-17		0.114	[0.086-0.142] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1114	chr2	69411516	69411517	rs6732795	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2p13.3	ANTXR1	rs6732795-?	NR	2E-13		0.1	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1114	chr2	69413891	69413892	rs6546486	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2p13.3	ANTXR1	rs6546486-A	0.566	7E-13		0.093	[0.068-0.118] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1114	chr2	69420479	69420480	rs141308086	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	2p13.3		rs141308086-?	NR	2E-8		0.704146	[0.45-0.96] unit decrease	NR [9800000] (imputed)	N
1114	chr2	69434226	69434227	rs12474538	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p13.3	NR	rs12474538-A	0.1487	9E-8	(EA)	0.0469	[0.03-0.064] unit decrease	Illumina [~ 11800000] (imputed)	N
1114	chr2	69447659	69447660	rs11126228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p13.3		rs11126228-?	NR	5E-19				NR [~ 8900000] (imputed)	N
1114	chr2	69452480	69452481	rs4854475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs4854475-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1114	chr2	69456416	69456417	rs77816630	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p13.3	NR	rs77816630-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1115	chr2	69477688	69477689	rs149587156	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2p13.3		rs149587156-?	NR	5E-6		1.234559	[1.12823964622548-1.35089742882528]	Illumina [7827597] (imputed)	N
1115	chr2	69513029	69513030	rs7585658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2p13.3	NR	rs7585658-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1115	chr2	69561807	69561808	rs57318013	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p13.3	GFPT1	rs57318013-?		9E-6				Illumina [4322238] (imputed)	N
1115	chr2	69579449	69579450	rs6728752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Spinal canal stenosis	9,660 European ancestry cases, 445,127 European ancestry controls, 661 East Asian ancestry cases, 178,065 East Asian ancestry controls	NA	2p13.3		rs6728752-A	NR	9E-10		0.0948	[0.064-0.125] unit decrease	Affymetrix, Illumina [25840105] (imputed)	N
1116	chr2	69600682	69600683	rs4410328	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p13.3	NR	rs4410328-?	NR	9E-7	(male)	0.12996	[0.078-0.182] unit decrease	Affymetrix [7794483] (imputed)	N
1116	chr2	69600682	69600683	rs4410328	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p13.3	NR	rs4410328-?	NR	1E-7		0.11318	[0.071-0.155] unit decrease	Affymetrix [7794483] (imputed)	N
1116	chr2	69600682	69600683	rs4410328	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p13.3	NA	rs4410328-T	0.4113	9E-8		0.0103	[0.0066-0.014] unit decrease	NR [~ 27400000] (imputed)	N
1116	chr2	69639611	69639612	rs74847504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2p13.3		rs74847504-G	NR	5E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1116	chr2	69646356	69646357	rs58300328	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2p13.3		rs58300328-G	0.59	2E-15				NR [NR] (imputed)	N
1116	chr2	69646356	69646357	rs58300328	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2p13.3		rs58300328-G	0.59	3E-18		0.013	% increase	NR [NR] (imputed)	N
1116	chr2	69650526	69650527	rs11892371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p13.3		rs11892371-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1116	chr2	69655789	69655790	rs4581940	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p13.3	NA	rs4581940-T	0.5857	3E-9		0.0101	[0.0068-0.0134] unit increase	NR [~ 27400000] (imputed)	N
1116	chr2	69659125	69659126	rs4453725	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2p13.3		rs4453725-T	0.4169	2E-9		0.12755848	[0.083-0.172] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1116	chr2	69659125	69659126	rs4453725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p13.3	NR	rs4453725-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1116	chr2	69667986	69667987	rs6758228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p13.3		rs6758228-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1116	chr2	69693746	69693747	rs57171084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p13.3		rs57171084-C	NR	8E-9		0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1116	chr2	69693746	69693747	rs57171084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p13.3		rs57171084-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1116	chr2	69704336	69704336	rs5831974	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2p13.3	AAK1	rs5831974-?	0.45	7E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1116	chr2	69704336	69704336	rs5831974	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2p13.3	AAK1	rs5831974-?	0.45	2E-9		0.033	[0.022-0.044] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1116	chr2	69704658	69704658	rs552899340	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2p13.3		rs552899340-ACGCTGAGGCACAAGATCACACG	0.0038785	2E-6		0.25879	[0.15-0.36] unit decrease	Affymetrix [15580782] (imputed)	N
1116	chr2	69723709	69723710	rs7577851	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2p13.3	NR	rs7577851-T	NR	3E-10		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1116	chr2	69723709	69723710	rs7577851	19772629	Latourelle JC	2009-09-22	BMC Med Genet	Genomewide association study for onset age in Parkinson disease.	Parkinson's disease (age of onset)	857 European ancestry familial cases, 440 idiopathic cases	747 European ancestry idiopathic cases	2p13.3	AAK1	rs7577851-T	NR	9E-6		6.85	[NR] years decrease	Illumina, Perlegen [1861750] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p13.3		rs12987661-C	NR	4E-25		0.0302	[0.025-0.036] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p13.3		rs12987661-C	NR	4E-9		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2p13.3		rs12987661-C	NR	7E-10		0.0171	[0.012-0.023] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2p13.3	NR	rs12987661-C	NR	1E-26		0.0384	[0.031-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2p13.3	AAK1	rs12987661-C	0.12528	1E-9		0.0201188	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2p13.3	AAK1	rs12987661-C	0.125281	8E-9		0.019212916	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs12987661-C	0.103944	6E-12				Affymetrix, Illumina [24653286] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p13.3	NR	rs12987661-C	0.123421	4E-13		0.020388	[0.015-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs12987661-C	0.104372	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2p13.3	NR	rs12987661-C	0.123385	1E-11		0.019083	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p13.3	AAK1	rs12987661-T	0.8786	4E-16		0.0426	[0.032-0.053] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p13.3	AAK1	rs12987661-T	0.8657	1E-12		0.041324	[0.03-0.053] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p13.3	NR	rs12987661-T	0.1242	1E-7	(women)	0.0401	[0.025-0.055] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2p13.3	NR	rs12987661-T	0.1206	2E-8	(men)	0.0485	[0.032-0.065] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p13.3		rs12987661-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1117	chr2	69813457	69813458	rs12987661	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	2p13.3	AAK1	rs12987661-C		6E-6		0.13	[0.07-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1117	chr2	69819573	69819574	rs2311837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs2311837-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1117	chr2	69821007	69821008	rs11693363	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p13.3	NR	rs11693363-A	0.87	4E-26		0.0288	[0.023-0.034] unit increase	NR [NR]	N
1117	chr2	69834228	69834229	rs115943056	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2p13.3		rs115943056-T	NR	4E-7		3.5757	[2.22-4.93] unit increase	Illumina [NR] (imputed)	N
1117	chr2	69839632	69839633	rs6546537	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	2p13.3	AAK1	rs6546537-C	0.28	6E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
1118	chr2	69973736	69973737	rs6705820	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p13.3	NR	rs6705820-G	0.502199	5E-8		0.0118193	[0.0076-0.0161] unit decrease	NR [NR]	N
1118	chr2	69976383	69976384	rs62133983	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Atrial fibrillation	15,979 European ancestry cases, 102,776 European ancestry controls.	NA	2p13.3	ANXA4, GMCL1	rs62133983-G	0.52	1E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [11795432] (imputed)	N
1118	chr2	69985434	69985435	rs7597155	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		2p13.3	ANXA4	rs7597155-A	NR	5E-6		0.0149	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1119	chr2	70038231	70038232	rs6546550	28416818	Christophersen IE	2017-04-17	Nat Genet	Large-scale analyses of common and rare variants identify 12 new loci associated with atrial fibrillation.	Prevalent atrial fibrillation	8,656 European ancestry cases, 102,776 European ancestry controls.		2p13.3	ANXA4/GMCL1	rs6546550-C	0.54	1E-8		1.12	1.08-1.16	Affymetrix, Illumina [at least 3187278] (imputed)	N
1119	chr2	70056865	70056866	rs28362672	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p13.3		rs28362672-A	0.7406	3E-8		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1119	chr2	70059823	70059824	rs4853036	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	2p13.3	GMCL1	rs4853036-?	0.264	6E-6	(same direction)	1.0869565	[1.05-1.12]	Illumina [up to 6000000] (imputed)	N
1119	chr2	70091722	70091724	rs534389389	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p13.3	GMCL1	rs534389389-C	0.249504	5E-9		0.015408773	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1119	chr2	70104312	70104313	rs6752271	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p13.3	GMCL1	rs6752271-?		2E-6				Illumina [4322238] (imputed)	N
1119	chr2	70106831	70106832	rs6747542	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2p13.3	GMCL1, ANXA4	rs6747542-T	0.536	1E-16		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1119	chr2	70111710	70111711	rs6546553	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p13.3	GMCL1	rs6546553-C	0.56	1E-17	(EA)	1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1119	chr2	70117014	70117015	rs10165883	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p13.3	SNRNP27	rs10165883-C	0.54	6E-19		1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1119	chr2	70119254	70119255	rs13393656	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p13.3	NR	rs13393656-A	0.2426	2E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1119	chr2	70120077	70120078	rs55866046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2p13.3		rs55866046-C	0.093642	5E-8		0.0311859	[0.02-0.042] unit decrease	Illumina [13478928] (imputed)	N
1119	chr2	70120077	70120078	rs55866046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p13.3		rs55866046-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1120	chr2	70127228	70127229	rs6716937	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	2p13.3	SNRNP27	rs6716937-G	0.4074	4E-7		1.10278	[1.06198-1.14514]	Illumina [4946503] (imputed)	N
1120	chr2	70131583	70131584	rs1048130	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2p13.3		rs1048130-G	0.806	7E-19				Affymetrix [10369434] (imputed)	N
1120	chr2	70145716	70145717	rs6546558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2p13.3		rs6546558-T	NR	3E-9		0.0557	[0.037-0.074] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1120	chr2	70149872	70149873	rs80352135	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p13.3	NR	rs80352135-A	0.193493	8E-37		0.029324	[0.025-0.034] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1120	chr2	70151470	70151471	rs10205487	24954085	Della-Morte D	2014-06-14	J Neurol Sci	Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.	Carotid plaque burden (smoking interaction)	665 Hispanic individuals	264 Hispanic indivduals	2p13.3	MXD1	rs10205487-A	0.45	2E-6		0.38	[0.22-0.54] unit increase	Affymetrix [722379]	N
1120	chr2	70153058	70153059	rs10710560	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2p13.3	MXD1	rs10710560-G	NR	3E-9		0.0354433	[0.023-0.047] unit increase	Affymetrix [16832071] (imputed)	N
1120	chr2	70164580	70164580	rs3217643	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	2p13.3	NR	rs3217643-?	NR	1E-6		0.0316	[0.019-0.044] unit increase	Illumina [at least 560000] (imputed)	N
1120	chr2	70164839	70164840	rs3771529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p13.3	MXD1	rs3771529-A	0.1958	9E-17		0.03822879	[0.029-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p13.3		rs7349311-A	NR	6E-34		0.0306	[0.026-0.035] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p13.3	MXD1	rs7349311-A	0.184829	2E-28		0.032469302	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p13.3	MXD1	rs7349311-A	0.184838	2E-38		0.037827753	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p13.3	NR	rs7349311-G	0.81716	3E-11		0.016341	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs7349311-A	0.169573	3E-40				Affymetrix, Illumina [24588908] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs7349311-G	0.821729	3E-44				Affymetrix, Illumina [17210439] (imputed)	N
1120	chr2	70165965	70165966	rs7349311	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p13.3	NR	rs7349311-G	0.816003	9E-48		0.036375	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1120	chr2	70172115	70172116	rs11686934	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p13.3	MXD1	rs11686934-G	0.4452	7E-9		0.02087011	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1120	chr2	70172586	70172587	rs6756513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p13.3	MXD1	rs6756513-A	0.281711	3E-10		0.015729439	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr2	70172586	70172587	rs6756513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p13.3	MXD1	rs6756513-A	0.281719	1E-11		0.016947974	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr2	70172586	70172587	rs6756513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p13.3	MXD1	rs6756513-A	0.281829	4E-11		0.016312141	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1120	chr2	70172586	70172587	rs6756513	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2p13.3	NR	rs6756513-A	0.2887	4E-7	(EA)	0.0366	[0.022-0.051] unit decrease	Illumina [~ 11800000] (imputed)	N
1120	chr2	70172586	70172587	rs6756513	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2p13.3	MXD1	rs6756513-A	0.2803	7E-10		0.02512901	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1120	chr2	70182804	70182805	rs7583236	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	SASP	rs7583236-G	0.247	4E-6	(Sedentary&light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
1121	chr2	70261656	70261657	rs10184849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p13.3		rs10184849-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1121	chr2	70290099	70290100	rs6749886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p13.3		rs6749886-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1121	chr2	70315986	70315987	rs11545482	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.3	PCBP1	rs11545482-T	0.0205	4E-11		0.0437	[0.031-0.057] unit decrease	Affymetrix [18391927] (imputed)	N
1121	chr2	70325672	70325673	rs113012284	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p13.3		rs113012284-C	NR	1E-10		0.0216	[0.015-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1121	chr2	70338343	70338344	rs7585767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs7585767-?	NR	8E-18				NR [~ 8900000] (imputed)	N
1121	chr2	70347766	70347767	rs6751609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p13.3		rs6751609-G	NR	2E-8		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1121	chr2	70347766	70347767	rs6751609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p13.3	AC016700.5	rs6751609-G	0.247559	5E-20		0.023837501	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1121	chr2	70355626	70355627	rs11695747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p13.3	NR	rs11695747-A	0.055924	5E-17		0.035278	[0.027-0.044] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1121	chr2	70355626	70355627	rs11695747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs11695747-A	0.0581461	7E-14				Affymetrix, Illumina [23114412] (imputed)	N
1121	chr2	70355626	70355627	rs11695747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p13.3	NR	rs11695747-A	0.055924	3E-14		0.033053	[0.025-0.042] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1121	chr2	70355950	70355951	rs11689890	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs11689890-T	0.0722614	2E-16				Affymetrix, Illumina [24649327] (imputed)	N
1121	chr2	70368922	70368923	rs6708331	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	C2orf42	rs6708331-A	0.094	6E-6	(WC change )	0.04	[NR] cm/y increase	Illumina [899892]	N
1121	chr2	70376664	70376665	rs4338987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs4338987-T	0.225605	6E-13				Affymetrix, Illumina [24332387] (imputed)	N
1122	chr2	70395852	70395852	rs113805531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p13.3	C2orf42	rs113805531-CT	0.226932	9E-11		0.017503899	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1122	chr2	70402179	70402180	rs7569453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p13.3		rs7569453-A	NR	2E-8		0.0291	[0.019-0.039] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1122	chr2	70402179	70402180	rs7569453	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p13.3		rs7569453-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1122	chr2	70403406	70403407	rs12989076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p13.3	C2orf42	rs12989076-C	0.254655	4E-28		0.028168172	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1122	chr2	70403406	70403407	rs12989076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs12989076-C	0.22947	4E-10				Affymetrix, Illumina [24246363] (imputed)	N
1122	chr2	70403406	70403407	rs12989076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p13.3	NR	rs12989076-C	0.251497	3E-10		0.01316	[0.0091-0.0173] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1122	chr2	70407122	70407123	rs13028968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p13.3	NR	rs13028968-C	0.251964	2E-14		0.016421	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1122	chr2	70407204	70407205	rs141314120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p13.3	C2orf42	rs141314120-G	0.055327	2E-19		0.043762993	[0.034-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1122	chr2	70407204	70407205	rs141314120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p13.3	C2orf42	rs141314120-G	0.055342	1E-15		0.038935468	[0.029-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1122	chr2	70412540	70412541	rs35689231	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2p13.3	C2orf42, FAM136A, PCBP1, PCYOX1, SNRPG, TIA1	rs35689231-C	NR	3E-8		0.0364484	NR unit increase	NR [NR] (imputed)	N
1122	chr2	70417137	70417138	rs12624244	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p13.3	NR	rs12624244-A	0.935583	8E-33		0.0197992	[0.016-0.023] unit increase	Affymetrix [16582909] (imputed)	N
1122	chr2	70417137	70417138	rs12624244	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p13.3	NR	rs12624244-A	0.935671	1E-19		0.0218367	[0.017-0.027] unit increase	Affymetrix [16585854] (imputed)	N
1122	chr2	70417137	70417138	rs12624244	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p13.3	NR	rs12624244-A	0.935583	3E-26		0.0194146	[0.016-0.023] unit increase	Affymetrix [16582965] (imputed)	N
1122	chr2	70417137	70417138	rs12624244	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p13.3	NR	rs12624244-A	0.935671	2E-13		0.0207576	[0.015-0.026] unit increase	Affymetrix [16585866] (imputed)	N
1122	chr2	70417729	70417730	rs6750410	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2p13.3	NR	rs6750410-A	0.934786	5E-12		0.0420059	[0.03-0.054] unit increase	Affymetrix [16577313] (imputed)	N
1122	chr2	70417729	70417730	rs6750410	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2p13.3	NR	rs6750410-A	0.934913	5E-16		0.0183024	[0.014-0.023] unit increase	Affymetrix [16582621] (imputed)	N
1122	chr2	70417729	70417730	rs6750410	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2p13.3	NR	rs6750410-A	0.934913	9E-14		0.0181975	[0.013-0.023] unit increase	Affymetrix [16582614] (imputed)	N
1122	chr2	70427575	70427576	rs72902450	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCYOX1	5,340 Icelandic ancestry individuals	NA	2p13.3		rs72902450-T	0.06719	5E-27		0.365993	[0.3-0.43] unit increase	Illumina [7506463] (imputed)	N
1122	chr2	70441774	70441775	rs2305144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs2305144-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1122	chr2	70471898	70471899	rs2706770	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p13.3	NR	rs2706770-A	NR	1E-8		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1122	chr2	70471898	70471899	rs2706770	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p13.3	NR	rs2706770-A	0.634	7E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1122	chr2	70471898	70471899	rs2706770	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p13.3	NR	rs2706770-A	NR	6E-8		0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCYOX1	5,340 Icelandic ancestry individuals	NA	2p13.3		rs2706762-T	0.1344	2E-206		0.707595	[0.66-0.75] unit decrease	Illumina [7506463] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IAPP	5,365 Icelandic ancestry individuals	NA	2p13.3		rs2706762-T	0.1344	2E-127		0.637382	[0.59-0.69] unit decrease	Illumina [7506463] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p13.3		rs2706762-T	NR	1E-10		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p13.3	PCYOX1	rs2706762-C	0.850468	9E-16		0.00254313	[0.0019-0.0032] unit increase	Affymetrix [13995440] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2p13.3	NR	rs2706762-T	NR	8E-11		0.0219	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p13.3		rs2706762-T	0.15	3E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p13.3	PCYOX1	rs2706762-C	0.8504	4E-14		1.0341262		Affymetrix [11880941] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p13.3	PCYOX1	rs2706762-C	0.8504	4E-14		1.037693		Affymetrix [11880941] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2p13.3		rs2706762-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	NR	rs2706762-C	0.86015625	2E-75	(IAPP, 5647_51_3)	0.63964957	[0.57-0.71] unit increase	Illumina [> 1000000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	NR	rs2706762-C	0.86015625	1E-121	(PCYOX1, 6431_68_3)	0.7899911	[0.73-0.85] unit increase	Illumina [> 1000000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p13.3	Intergenic	rs2706762-T	0.1494	1E-8	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p13.3	Intergenic	rs2706762-T	0.1457	3E-9	(MTAG)	0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p13.3	Intergenic	rs2706762-T	0.1506	2E-9	(MTAG)	0.0193	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1122	chr2	70488469	70488470	rs2706762	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.3	NR	rs2706762-?	NR	3E-6		4.683	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1123	chr2	70524141	70524142	rs14234	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p13.3	FAM136A	rs14234-A	0.5472	2E-11		0.0131	[0.0094-0.0168] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1123	chr2	70524141	70524142	rs14234	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2p13.3	FAM136A	rs14234-A	0.5472	2E-8		0.0112	[0.0073-0.0151] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1123	chr2	70550923	70550924	rs55857565	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2p13.3	NR	rs55857565-A	0.194668	2E-13		0.0288467	[0.021-0.037] unit increase	NR [19129689] (imputed)	N
1123	chr2	70551915	70551916	rs2169838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p13.3		rs2169838-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1123	chr2	70558993	70558994	rs4852159	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2p13.3		rs4852159-T	NR	3E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1123	chr2	70642806	70642807	rs6546604	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	2p13.3	FAM136A, TGFA	rs6546604-?		5E-7		1.2787724	[1.16-1.41]	Illumina [~ 12000000] (imputed)	N
1124	chr2	70648071	70648072	rs4852180	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p13.3	FAM136A	rs4852180-?	NR	7E-7	(TAG 58:8)	0.24090976	[0.15-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1124	chr2	70665661	70665662	rs187293906	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	2p13.3	TGFA, ADD2, ASPRV1, Mir_548, ATP6V1B1, C2orf42, CD207, CLEC4F, FAM136A, FIGLA, LOC100133985, PCBP1, PCBP1-AS1, PCYOX1, SNRPG, TIA1, TRNA, TRNA_Gly, TRNA_Pseudo, VAX2	rs187293906-T	0.0015	5E-6		3.27	[1.65-6.49]	Illumina [7300000] (imputed)	N
1124	chr2	70686225	70686226	rs75659306	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		2p13.3	NR	rs75659306-G	0.9876089	4E-6		1.3278608	[1.52-1.33]	Affymetrix [16499239] (imputed)	N
1124	chr2	70697666	70697667	rs3771514	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p13.3	TGFA	rs3771514-A	0.386	8E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1124	chr2	70697719	70697720	rs3771512	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	2p13.3	TGFA	rs3771512-A	0.45	7E-6	(Right superior frontal gyrus)	740.3	[NR] unit increase	Affymetrix [517946]	N
1124	chr2	70703846	70703847	rs958685	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	2p13.3	TGFA	rs958685-A	0.5142	7E-9		0.0428	[0.028-0.057] unit decrease	Affymetrix, Illumina [9457422] (imputed)	N
1124	chr2	70703846	70703847	rs958685	29313844	Willems SM	2017-07-12	Nat Commun	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.	Hand grip strength	142,035 European ancestry individuals	53,145 European ancestry individuals	2p13.3	TGFA	rs958685-A	0.515	5E-13		0.1571	[0.11-0.2] kg increase	Affymetrix [at least 17000000] (imputed)	N
1124	chr2	70712801	70712802	rs2862851	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	2p13.3	TGFA	rs2862851-T	0.49	5E-11		0.067	[0.047-0.087] unit decrease	Illumina [2385183] (imputed)	N
1124	chr2	70714792	70714793	rs7571789	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	2p13.3	NR	rs7571789-T	0.48	3E-14		1.09	[1.07-1.12]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	2p13.3		rs3771501-A	0.4679	4E-15		1.0363449	[1.027244692-1.045525718]	Affymetrix, Illumina [NR] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (FNIH)	20,335 European ancestry cases, 236,188 European ancestry controls	NA	2p13.3	TGFA	rs3771501-A	0.47	5E-11		0.0697	unit increase	Affymetrix, Illumina [9465622] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	2p13.3	TGFA	rs3771501-G	0.53	2E-8		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	2p13.3	TGFA	rs3771501-A	0.47	4E-16		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	2p13.3	NR	rs3771501-?	0.47	2E-8		1.069965	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		2p13.3	NR	rs3771501-A	0.47473699999999996	4E-6		1.0670309	[1.1-1.07]	Affymetrix [16499239] (imputed)	N
1124	chr2	70717652	70717653	rs3771501	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	2p13.3	NR	rs3771501-A	0.473771	9E-7		1.0556318	[1.03-1.08]	Affymetrix [16468597] (imputed)	N
1124	chr2	70720069	70720070	rs3771498	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2p13.3	TGFA	rs3771498-T	0.5169	1E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1124	chr2	70721005	70721006	rs3821262	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	2p13.3	NR	rs3821262-A	0.53	4E-13		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
1124	chr2	70736218	70736219	rs454305	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2p13.3	TGFA	rs454305-?	NR	5E-6				Illumina [874956]	N
1124	chr2	70759160	70759161	rs428225	29065906	Joo YB	2017-10-25	Arthritis Res Ther	Biological function integrated prediction of severe radiographic progression in rheumatoid arthritis: a nested case control study.	Severe progression in rheumatoid arthritis	120 Korean ancestry cases, 118 Korean ancestry controls	NA	2p13.3	TGFA	rs428225-?	NR	8E-6		5.0		Illumina [1343748]	N
1124	chr2	70759660	70759661	rs79070520	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2p13.3	TGFA	rs79070520-?	NR	9E-7		8.73	[3.68-20.71]	Illumina [8600000] (imputed)	N
1124	chr2	70764687	70764688	rs432203	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	2p13.3	TGFA	rs432203-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1125	chr2	70785805	70785806	rs12614998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.3		rs12614998-?	NR	8E-19				NR [~ 8900000] (imputed)	N
1125	chr2	70785805	70785806	rs12614998	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p13.3		rs12614998-?	NR	3E-17		0.019861	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1125	chr2	70795518	70795519	rs72912147	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p13.3	TGFA	rs72912147-A	0.785015	7E-16		0.0180284	[0.014-0.022] unit decrease	NR [13737936] (imputed)	N
1125	chr2	70802495	70802496	rs62151617	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	2p13.3	TGFA	rs62151617-G	0.2683649	3E-11		0.037417945	[0.026-0.048] unit decrease	Illumina [up to 9350000] (imputed)	N
1125	chr2	70803100	70803101	rs72912161	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2p13.3	Intergenic	rs72912161-T	NR	7E-6		0.284301	[0.16-0.41] unit increase	Illumina [13519193] (imputed)	N
1125	chr2	70816604	70816605	rs115141868	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	2p13.3	TGFA, ADD2	rs115141868-?		8E-7		46.7739	[28.46-65.09] unit decrease	NR [NR] (imputed)	N
1125	chr2	70848734	70848735	rs192578492	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2p13.3		rs192578492-?	NR	2E-6		0.8185436	[0.48-1.15] unit decrease	Illumina [9875426] (imputed)	N
1125	chr2	70867255	70867256	rs61490593	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p13.3	NR	rs61490593-?		6E-6				Illumina [4322238] (imputed)	N
1125	chr2	70869472	70869473	rs6733938	25353672	Fernandez-Navarro P	2014-10-29	Int J Cancer	Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21.	Mammographic density	239 European ancestry low mammographic density females, 239 European ancestry high mammographic density females	NA	2p13.3	NR	rs6733938-G	0.155	5E-6		2.38	[1.61-3.45]	Illumina [575374]	N
1126	chr2	71019242	71019243	rs11894344	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	2p13.3	CLEC4F	rs11894344-?	0.003731	2E-9		19.35	[5.081-73.68]	Affymetrix [547296]	N
1126	chr2	71028272	71028273	rs7586340	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2p13.3		rs7586340-?	NR	9E-6		0.969692	[0.96-0.98]	NR [688737]	N
1127	chr2	71042417	71042418	rs115455308	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p13.3	CLEC4F	rs115455308-C	0.992	4E-6	(AA)	0.167	NR unit increase	Illumina [NR] (imputed)	N
1127	chr2	71042417	71042418	rs115455308	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p13.3	CLEC4F	rs115455308-C	0.992	4E-6	(AA)	0.697	NR unit increase	Illumina [NR] (imputed)	N
1127	chr2	71052998	71052999	rs145284077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2p13.3	Intergenic	rs145284077-A	0.989	3E-6	(AA)	0.596	NR unit increase	Illumina [NR] (imputed)	N
1127	chr2	71056740	71056741	rs13414647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	2,894 European ancestry cases, 472,484 European ancestry controls, 18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	2p13.3		rs13414647-A	NR	4E-9		0.1029	[0.069-0.137] unit increase	Affymetrix, Illumina [25844049] (imputed)	N
1127	chr2	71058905	71058906	rs3213749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pollinosis	18,593 East Asian ancestry cases, 153,666 East Asian ancestry controls	NA	2p13.3		rs3213749-T	0.124403628	4E-9		0.105587855	[0.07-0.141] unit increase	Illumina [13429010] (imputed)	N
1127	chr2	71063941	71063942	rs4852708	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p13.3	NR	rs4852708-C	0.875251656884876	9E-6	(IGP19)	0.2055	[0.11-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
1127	chr2	71067852	71067853	rs6723629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2p13.3		rs6723629-C	NR	3E-8		0.1078	[0.07-0.146] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1127	chr2	71067852	71067853	rs6723629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2p13.3		rs6723629-C	0.256545849	1E-8		0.16219871	[0.11-0.22] unit decrease	Illumina [13428180] (imputed)	N
1127	chr2	71090524	71090525	rs10167243	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p13.3	CD207	rs10167243-G	0.812359891048333	1E-6	(C_Alphaproteobacteria_RNT)	0.181792	[0.11-0.26] unit decrease	Illumina [7711310] (imputed)	N
1127	chr2	71091522	71091523	rs182039645	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2p13.3	CD207, LINC01143	rs182039645-C	0.9869	9E-6		0.5248	[0.29-0.76] unit decrease	NR [NR] (imputed)	N
1127	chr2	71091522	71091523	rs182039645	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	2p13.3	CD207, LINC01143	rs182039645-C	0.9869	9E-6		0.5248	[0.29-0.76] unit decrease	NR [NR] (imputed)	N
1127	chr2	71095409	71095410	rs200543403	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	2p13.3		rs200543403-?	NR	3E-9		0.81	[0.76-0.87]	Illumina [9900441] (imputed)	N
1127	chr2	71100104	71100105	rs112111458	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2p13.3	CD207, VAX2	rs112111458-G	0.13	2E-7	(random effects)		NR	Illumina [15539996] (imputed)	N
1127	chr2	71100104	71100105	rs112111458	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2p13.3	CD207, VAX2	rs112111458-A	0.87	9E-9	(EA, fixed effects)	1.0638298		Illumina [15539996] (imputed)	N
1127	chr2	71101425	71101426	rs6546647	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	2p13.3	VAX2	rs6546647-T	NR	2E-8	(GO:0048598|BP|03|embryonic morphogenesis)	5.6177616	NR Z-score decrease	Illumina [8100000] (imputed)	N
1127	chr2	71102285	71102286	rs6723162	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	2p13.3	intergenic	rs6723162-T		1E-6		1.6528925	[NR]	Affymetrix [NR]	N
1127	chr2	71112593	71112594	rs7565349	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.3	CD207, VAX2	rs7565349-G	0.938548	1E-11	(N-acetylasparagine)	0.329	[0.23-0.43] unit decrease	Illumina [13039987] (imputed)	N
1127	chr2	71133013	71133014	rs3771395	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		2p13.3	VAX2	rs3771395-G	0.16	2E-7		0.082	[NR] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
1127	chr2	71162772	71162773	rs17663700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p13.3		rs17663700-T	NR	9E-12		0.0124	[0.0089-0.0159] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1127	chr2	71163085	71163086	rs11681642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p13.3		rs11681642-C	NR	5E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1127	chr2	71163224	71163225	rs759219	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2p13.3	ATP6V1B1	rs759219-T	0.4129	9E-9		0.0182	[0.012-0.024] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1127	chr2	71163224	71163225	rs759219	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2p13.3	ATP6V1B1	rs759219-T	0.4387	8E-9		0.022269	[0.015-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1128	chr2	71172896	71172897	rs3901868	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p13.3	NR	rs3901868-?	NR	9E-6				Affymetrix [NR]	N
1128	chr2	71192256	71192257	rs45498896	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		VAX2	rs45498896-?	NR	2E-8	(male)	2.00037	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1128	chr2	71193650	71193651	rs140208844	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC007040.2	rs140208844-?	NR	2E-8	(male)	2.00836	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1128	chr2	71226382	71226383	rs6720350	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.3	TEX261, OR7E91P	rs6720350-A	0.885173	5E-11	(N-acetylleucine)	0.251	[0.18-0.33] unit decrease	Illumina [13039987] (imputed)	N
1128	chr2	71226382	71226383	rs6720350	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.3	TEX261, OR7E91P	rs6720350-A	0.885173	5E-11	(N-acetylleucine)	0.251	[0.18-0.33] unit decrease	Illumina [13039987] (imputed)	N
1128	chr2	71243220	71243221	rs147809295	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p13.3	NR	rs147809295-?	NR	5E-8				Illumina [7760689] (imputed)	N
1128	chr2	71248275	71248276	rs6752944	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	2p13.3	AC007040.8	rs6752944-G	NR	5E-6		1.073	[1.041- 1.105]	Illumina [6740241] (imputed)	N
1128	chr2	71255690	71255691	rs390966	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Erythema nodosum in inflammatory bowel disease	103 European ancestry cases, 5,653 European ancestry controls	NA	2p13.3	CD207, NAGK, CLEC4F, MCEE	rs390966-G	NR	3E-6		2.17	[1.60-3.00]	Illumina [2017629] (imputed)	N
1128	chr2	71269842	71269843	rs34017685	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	2p13.3	NR	rs34017685-C		8E-6		0.2745	[0.16-0.39] SD units increase	NR [10700000] (imputed)	N
1128	chr2	71276398	71276399	rs7606102	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p13.3	NAGK	rs7606102-G	0.17	6E-39	(N-acetyl-D-glucosamine kinase, NAGK.3894.15.2)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1128	chr2	71280809	71280810	rs4605395	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGK	5,366 Icelandic ancestry individuals	NA	2p13.3		rs4605395-C	0.1996	2E-93		0.464776	[0.42-0.51] unit decrease	Illumina [7506463] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p13.3		rs2160783-G	NR	1E-10		0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p13.3	AC007040.8	rs2160783-G	0.339837	3E-12		0.016256226	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p13.3	AC007040.8	rs2160783-G	0.33981	9E-13		0.016617239	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.3	NR	rs2160783-G	0.41817	8E-13				Affymetrix, Illumina [19872809] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p13.3	NR	rs2160783-G	0.340783	2E-14		0.015944	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1128	chr2	71283466	71283467	rs2160783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p13.3		rs2160783-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1128	chr2	71289215	71289216	rs560576410	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p13.3	NR	rs560576410-?	NR	7E-7		0.0084106	[0.0051-0.0117] unit increase	Affymetrix [805426] (imputed)	N
1128	chr2	71292521	71292522	rs11680831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p13.3	NR	rs11680831-C	0.359	9E-36	(N-acetyl-D-glucosamine kinase, NAGK.3894.15.2)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1128	chr2	71297981	71297982	rs2287327	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAGK	5,366 Icelandic ancestry individuals	NA	2p13.3		rs2287327-T	0.3615	1E-102		0.402963	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
1128	chr2	71297981	71297982	rs2287327	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p13.3	NAGK	rs2287327-C	0.640625	2E-57	(NAGK, 3894_15_2)	0.39539728	[0.35-0.44] unit increase	Illumina [> 1000000] (imputed)	N
1129	chr2	71325354	71325355	rs6714900	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p13.3	NAGK, AC007040.8, RP11-467P9.1	rs6714900-G	0.3318273	4E-29	(EA, N-acetyl-D-glucosamine kinase)	0.5154	[0.43-0.6] unit decrease	Affymetrix [509946]	N
1129	chr2	71379349	71379350	rs898123	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p13.3	MPHOSPH10	rs898123-C	0.6593	3E-6		0.0287	[0.017-0.041] unit decrease	NR [8041861] (imputed)	N
1129	chr2	71379392	71379393	rs2080643	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p13.3	MCEE	rs2080643-?	NR	1E-6	(TAG 54:1)	0.39044285	[0.23-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1129	chr2	71399577	71399578	rs56372506	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.3	NR	rs56372506-T	NR	3E-8		5.553	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1129	chr2	71401792	71401793	rs418072	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p13.3	MPHOSPH10	rs418072-?	NR	5E-6	(TAG 54:3)	0.17663386	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1129	chr2	71409576	71409577	rs4852249	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p13.3	MPHOSPH10	rs4852249-?	NR	1E-6	(LPC 18:1)	0.16280743	[0.097-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
1129	chr2	71430541	71430542	rs13034890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.3		rs13034890-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1130	chr2	71447674	71447675	rs113988120	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	2p13.3	PAIP2B	rs113988120-A	0.015	3E-6		1.79	[1.40-2.29]	NR [7738399] (imputed)	N
1130	chr2	71508184	71508185	rs12477570	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.3	NR	rs12477570-A	NR	2E-9		6.042	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1130	chr2	71524756	71524757	rs2058898	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.3	NR	rs2058898-A	NR	6E-11		6.535	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1130	chr2	71525783	71525784	rs2670747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2p13.3	NR	rs2670747-G	0.12731800000000004	3E-10		0.00740862	[0.005-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
1130	chr2	71525783	71525784	rs2670747	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2p13.3	NR	rs2670747-G	0.12731800000000004	3E-11		0.00874097	[0.006-0.0115] unit increase	Affymetrix [16582965] (imputed)	N
1130	chr2	71525784	71525785	rs12612930	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	2p13.3	ZNF638	rs12612930-C	0.6	2E-10		0.1	[0.069-0.131] unit increase	Affymetrix [1532051] (imputed)	N
1130	chr2	71529330	71529331	rs7605066	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p13.2	PAIP2B, ZNF638	rs7605066-C		6E-9		0.149	unit increase	Affymetrix [at least 2696785] (imputed)	N
1130	chr2	71533299	71533300	rs6731420	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p13.2	NR	rs6731420-T	NR	2E-8		0.016438717	[0.011-0.022] unit decrease	Affymetrix [NR]	N
1130	chr2	71534160	71534161	rs4852777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2p13.2	ZNF638	rs4852777-C	0.595185	1E-9		0.013558241	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1130	chr2	71534160	71534161	rs4852777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs4852777-?	NR	1E-86				NR [~ 8900000] (imputed)	N
1130	chr2	71534160	71534161	rs4852777	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p13.2	ZNF638	rs4852777-C	0.6008	2E-7		0.0486	[0.03-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1130	chr2	71534497	71534498	rs2419075	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.2	NR	rs2419075-T	NR	2E-8		5.618	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1130	chr2	71534616	71534617	rs4470366	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p13.2	NR	rs4470366-T	0.436382	5E-10		0.039447937	[0.027-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1130	chr2	71534616	71534617	rs4470366	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p13.2	ZNF638	rs4470366-T	0.416638	2E-11		0.0124535	[0.0088-0.0161] unit decrease	NR [13737936] (imputed)	N
1130	chr2	71534616	71534617	rs4470366	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p13.2	Intergenic	rs4470366-A	0.5833	4E-10		0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1130	chr2	71537386	71537390	rs3077435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p13.2		rs3077435-A	NR	5E-78		0.0252	[0.023-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1130	chr2	71539300	71539301	rs4852252	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p13.2	Intergenic	rs4852252-T	0.4338	6E-10	(MTAG)	0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1130	chr2	71539300	71539301	rs4852252	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.2	NR	rs4852252-T	NR	4E-14		7.566	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1130	chr2	71539300	71539301	rs4852252	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.2	NA	rs4852252-T	NR	6E-10		6.191	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1130	chr2	71544953	71544954	rs4852778	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p13.2	ZNF638	rs4852778-?	NR	4E-8		0.0096549	[0.0062-0.0131] unit decrease	Affymetrix [805426] (imputed)	N
1130	chr2	71551620	71551621	rs7595140	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2p13.2	ZNF638, PAIP2B	rs7595140-?	NR	4E-8	(EA)	5.7	[3.74-7.66] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1130	chr2	71551620	71551621	rs7595140	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p13.2	PAIP2B	rs7595140-?	NR	3E-6	(salicylurate)	0.4720356	[0.27-0.67] unit increase	Affymetrix [at least 2500000] (imputed)	N
1130	chr2	71560664	71560665	rs3771381	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p13.2	ZNF638	rs3771381-A	0.48	8E-19		0.045	[0.033-0.057] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1130	chr2	71562502	71562503	rs17743415	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2p13.2	ZNF638	rs17743415-C	0.57	2E-10		6.36	z-score increase	Affymetrix [4314223] (imputed)	N
1130	chr2	71562502	71562503	rs17743415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.2	NR	rs17743415-C	0.490464	2E-19				Affymetrix, Illumina [24246363] (imputed)	N
1130	chr2	71562502	71562503	rs17743415	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p13.2	NR	rs17743415-C	0.565582	3E-18		0.01593	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1130	chr2	71562502	71562503	rs17743415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.2		rs17743415-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1131	chr2	71568205	71568206	rs1990774	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2p13.2	ZNF638	rs1990774-?	NR	2E-8		5.629	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1131	chr2	71572454	71572455	rs7581030	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	2p13.2	ZNF638	rs7581030-T	0.24	2E-11		1.17	[1.12-1.23]	Illumina [at least 371504] (imputed)	N
1131	chr2	71572916	71572917	rs6746731	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2p13.2	ZNF638	rs6746731-T	0.4287	5E-8		5.456	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1131	chr2	71572916	71572917	rs6746731	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2p13.2	ZNF638	rs6746731-T	0.4287	4E-6	(Adults)	4.591	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1131	chr2	71582252	71582253	rs13035834	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.2	NR	rs13035834-A	NR	2E-9		5.998	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr2	71582307	71582308	rs12986712	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p13.2	ZNF638	rs12986712-G	NR	5E-8		0.0195669	[0.013-0.027] unit increase	Affymetrix [323123] (imputed)	N
1131	chr2	71583923	71583924	rs6726122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p13.2		rs6726122-T	NR	2E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1131	chr2	71583923	71583924	rs6726122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p13.2	ZNF638	rs6726122-A	NR	5E-12		0.0196257	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1131	chr2	71584200	71584201	rs56408212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p13.2		rs56408212-T	NR	4E-11		0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1131	chr2	71584200	71584201	rs56408212	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p13.2	NR	rs56408212-?	NR	5E-8	(male)	0.19204	[0.12-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
1131	chr2	71584200	71584201	rs56408212	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p13.2	NR	rs56408212-?	NR	3E-12		0.15542	[0.11-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
1131	chr2	71584484	71584485	rs7568069	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2p13.2	NR	rs7568069-?	NR	9E-10		0.03647608	[0.025-0.048] unit decrease	Illumina [34656550] (imputed)	N
1131	chr2	71584484	71584485	rs7568069	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p13.2	ZNF638	rs7568069-A	0.578	3E-13		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1131	chr2	71594533	71594534	rs10445946	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p13.2		rs10445946-?	NR	2E-9		0.0121493	[0.0081-0.0162] unit decrease	Affymetrix [20259828] (imputed)	N
1131	chr2	71606832	71606833	rs2670714	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.2	ZNF638	rs2670714-?	NR	1E-27		0.030785715	[0.025-0.036] unit increase	Illumina [27896057] (imputed)	N
1131	chr2	71609072	71609073	rs6745907	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	2p13.2	DYSF, PAIP2B, ZNF638	rs6745907-A	0.433	6E-9		5.82	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
1131	chr2	71613913	71613914	rs7557781	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p13.2	ZNF638	rs7557781-?	NR	5E-12		0.013778182	[0.0099-0.0177] unit decrease	NR [7306098]	N
1131	chr2	71614442	71614443	rs6717013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p13.2		rs6717013-A	NR	5E-12		0.0141	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1131	chr2	71614442	71614443	rs6717013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p13.2		rs6717013-A	NR	3E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p13.2		rs12478953-T	0.339	2E-10		0.07	[-0.1--0.05] % decrease	Affymetrix [NR] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p13.2	ZNF638	rs12478953-C	0.661128	2E-21		0.022361679	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p13.2	ZNF638	rs12478953-C	0.661263	1E-15		0.018222	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.2	NR	rs12478953-C	0.622374	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p13.2	NR	rs12478953-C	0.661043	4E-11		0.013357	[0.0094-0.0173] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1131	chr2	71618598	71618599	rs12478953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p13.2		rs12478953-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1131	chr2	71620110	71620111	rs4852780	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p13.2	ZNF638	rs4852780-T	0.4262	2E-9		0.1526	[0.1-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1131	chr2	71630040	71630041	rs7578166	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p13.2		rs7578166-?	NR	3E-9		0.0123592	[0.0082-0.0165] unit decrease	Affymetrix [20259828] (imputed)	N
1131	chr2	71630040	71630041	rs7578166	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p13.2	ZNF638	rs7578166-A	0.389101	8E-7	(women)	0.0227096	[0.014-0.032] unit decrease	NR [17166351] (imputed)	N
1131	chr2	71630040	71630041	rs7578166	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2p13.2	ZNF638	rs7578166-A	0.388582	2E-10		0.0224212	[0.016-0.029] unit decrease	NR [17166351] (imputed)	N
1131	chr2	71631344	71631345	rs4852256	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2p13.2		rs4852256-?	NR	4E-8				NR [7857346] (imputed)	N
1131	chr2	71638604	71638604	rs537942317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p13.2	ZNF638	rs537942317-AT	0.634402	1E-9		0.013908237	[0.0094-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1131	chr2	71647808	71647809	rs4852785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2p13.2	ZNF638	rs4852785-A	0.572886	1E-18		0.019943275	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1131	chr2	71658016	71658017	rs6546692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p13.2		rs6546692-A	NR	7E-15		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1131	chr2	71658016	71658017	rs6546692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p13.2	ZNF638	rs6546692-A	NR	4E-13		0.0224138	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
1131	chr2	71671115	71671116	rs11126331	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.2	NR	rs11126331-T	NR	9E-9		5.751	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr2	71676365	71676366	rs4241246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p13.2	NR	rs4241246-?	NR	5E-8		0.0095654	[0.0061-0.013] unit decrease	Affymetrix [805426] (imputed)	N
1131	chr2	71677945	71677946	rs7579497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p13.2		rs7579497-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1131	chr2	71678519	71678520	rs4852257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p13.2		rs4852257-G	NR	8E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1131	chr2	71678519	71678520	rs4852257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p13.2		rs4852257-G	NR	1E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1131	chr2	71678519	71678520	rs4852257	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.2	DYSF	rs4852257-T	0.4237	6E-34		0.0231	[0.019-0.027] unit increase	Affymetrix [18391927] (imputed)	N
1131	chr2	71680949	71680950	rs6741336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2p13.2	Intergenic	rs6741336-C	0.9215	3E-8		0.0233	[0.015-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr2	71682789	71682790	rs12479238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p13.2	DYSF	rs12479238-T	NR	4E-8		0.0172909	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1131	chr2	71682789	71682790	rs12479238	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.2	NR	rs12479238-T	NR	8E-10		6.137	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr2	71682949	71682950	rs4852259	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.2	DYSF	rs4852259-C	NR	5E-9		5.849	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1131	chr2	71688117	71688118	rs56988800	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2p13.2	DYSF	rs56988800-?	NR	1E-7				Affymetrix [5486770] (imputed)	N
1131	chr2	71695110	71695111	rs6738477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p13.2	DYSF	rs6738477-T	NR	4E-8		0.0178338	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1132	chr2	71734273	71734274	rs11686031	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	2p13.2		rs11686031-G	NR	5E-6		1.3192		Illumina [7574753] (imputed)	N
1132	chr2	71734897	71734898	rs12464624	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	2p13.2	DYSF	rs12464624-C	0.58	5E-6	(women)	0.082	[0.047-0.117] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1132	chr2	71773226	71773227	rs115789906	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	2p13.2	NR	rs115789906-?	NR	3E-6		0.195	[0.11-0.28] unit increase	Illumina [at least 560000] (imputed)	N
1132	chr2	71780820	71780821	rs2303597	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 45)	19,670 European ancestry individuals	NA	2p13.2		rs2303597-?	NR	6E-11				NR [9705931] (imputed)	N
1132	chr2	71780820	71780821	rs2303597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs2303597-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1132	chr2	71827384	71827385	rs17655927	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 61)	4,680 European ancestry individuals	3,566 European ancestry individuals	2p13.2		rs17655927-T	0.2894678	3E-9				Illumina [7417619] (imputed)	N
1133	chr2	71857352	71857353	rs2559085	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2p13.2	NR	rs2559085-A	NR	2E-6		0.086	[0.051-0.121] unit increase	Illumina [11133794] (imputed)	N
1133	chr2	71945443	71945444	rs749314	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p13.2	NR	rs749314-?		8E-9	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1133	chr2	71952795	71952796	rs1365975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs1365975-?	NR	8E-20				NR [~ 8900000] (imputed)	N
1133	chr2	71953685	71953686	rs6749644	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.2	intergenic	rs6749644-T	0.6871	6E-13		0.0141	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1133	chr2	71954467	71954468	rs6760396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p13.2		rs6760396-A	0.32	6E-26		10.53	z score increase	Affymetrix [9061022] (imputed)	N
1133	chr2	71954467	71954468	rs6760396	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2p13.2		rs6760396-A	0.32	7E-13		7.19	z score increase	Affymetrix [9061022] (imputed)	N
1133	chr2	71954467	71954468	rs6760396	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2p13.2	NR	rs6760396-A	0.3552	3E-11				NR [9056863] (imputed)	N
1133	chr2	71958479	71958480	rs2900976	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p13.2	DYSF	rs2900976-?	0.30	1E-6	(Albumin)			Illumina [496032]	N
1134	chr2	71965758	71965759	rs4481011	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p13.2		rs4481011-T	0.33	2E-9		6.04	z score increase	Affymetrix [9061022] (imputed)	N
1134	chr2	71965758	71965759	rs4481011	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p13.2	NR	rs4481011-T	0.3557	8E-11				NR [9056863] (imputed)	N
1134	chr2	71977553	71977554	rs6740021	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2p13.2	NR	rs6740021-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1134	chr2	71981933	71981934	rs12477144	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2p13.2	DYSF	rs12477144-C	0.3219	7E-6		0.043	[0.024-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1134	chr2	71991029	71991030	rs13013195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.2		rs13013195-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1134	chr2	71997310	71997311	rs113325445	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2p13.2		rs113325445-T	0.28151	5E-6		0.034057	[0.019-0.049] unit decrease	Affymetrix [15580782] (imputed)	N
1134	chr2	72000710	72000711	rs535885579	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2p13.2	NR	rs535885579-?	NR	7E-6		1.02718	[0.58-1.48] unit increase	NR [13958389] (imputed)	N
1134	chr2	72013616	72013617	rs1809265	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	2p13.2	NR	rs1809265-?	NR	3E-7		0.2115	NR	Illumina [802276]	N
1134	chr2	72035670	72035671	rs17007417	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic steatohepatitis-derived hepatocellular carcinoma	58 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	2p13.2	DYSF	rs17007417-T	0.17	5E-7		2.74	[1.85-4.06]	Illumina [93606]	N
1134	chr2	72039713	72039714	rs35548551	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2p13.2	DYSF	rs35548551-T	0.12	3E-10				NR [> 9500000] (imputed)	N
1134	chr2	72054836	72054837	rs35668054	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p13.2	NR	rs35668054-T	NR	4E-15		0.0381	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1134	chr2	72054836	72054837	rs35668054	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2p13.2	DYSF	rs35668054-C	0.924705	4E-8		1.0658935	[1.04180743031672-1.09053645378599]	NR [9572556] (imputed)	N
1134	chr2	72054836	72054837	rs35668054	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	2p13.2	CYP26B1	rs35668054-T	0.0762	2E-20		0.18	NR SD units decrease	Illumina [21568490] (imputed)	N
1134	chr2	72077959	72077960	rs11895277	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p13.2		rs11895277-T	0.883194	1E-9		0.020942336	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1134	chr2	72077959	72077960	rs11895277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p13.2		rs11895277-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1134	chr2	72085790	72085791	rs10206237	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	2p13.2		rs10206237-G	NR	8E-7		0.7366		Illumina [up to 7574753] (imputed)	N
1135	chr2	72102209	72102210	rs78479673	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs78479673-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1135	chr2	72111529	72111530	rs7584466	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Cardiovascular death or myocardial infarction in response to clopidogrel treatment	102 European ancestry cases, 2,068 European ancestry controls	NA	2p13.2	CYP26B1	rs7584466-?	0.29186	2E-6		2.3175902	NR	Illumina [5009928] (imputed)	N
1135	chr2	72131031	72131032	rs6712232	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 24 weeks)	98 European ancestry cases and controls	NA	2p13.2	intergenic	rs6712232-G	0.22	5E-6	(CGI)	14.28		Illumina [266820] (imputed)	N
1135	chr2	72156701	72156702	rs7587256	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2p13.2	NR	rs7587256-A	0.0396	4E-6		0.3333	[0.19-0.47] unit increase	Illumina [7305641] (imputed)	N
1135	chr2	72165305	72165306	rs72842919	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2p13.2	Intergenic	rs72842919-A	0.985	5E-7	(liability model)	0.38	[0.22-0.54] unit decrease	NR [19725427] (imputed)	N
1135	chr2	72183010	72183011	rs149890934	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		CYP26B1	rs149890934-T	0.03	4E-6				Illumina [1679420] (imputed)	N
1135	chr2	72213556	72213557	rs116765889	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p13.2	Intergenic	rs116765889-A	0.999	4E-7	(AA)	2.508	NR unit increase	Illumina [NR] (imputed)	N
1136	chr2	72230451	72230452	rs74258811	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2p13.2		rs74258811-A	NR	2E-9		0.79	[0.54-1.04] unit decrease	Illumina [101200590]	N
1136	chr2	72256403	72256404	rs11679052	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	2p13.2	CYP26B1	rs11679052-G	0.578	5E-8		0.005	[0.003-0.006] unit decrease	NR [57525634] (imputed)	N
1136	chr2	72300986	72300987	rs143548133	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	2p13.2	CYP26B1	rs143548133-T	0.01	7E-6		0.57	[0.32-0.82] unit increase	Illumina [14638245] (imputed)	N
1136	chr2	72329602	72329603	rs10208443	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	2p13.2	Intergenic	rs10208443-?		7E-6		1.348	[NR]	Affymetrix [492217] (imputed)	N
1136	chr2	72329684	72329685	rs10185019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.2		rs10185019-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1136	chr2	72330333	72330334	rs11696009	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p13.2	CYP26B1	rs11696009-A	0.659781	7E-16		0.0156194	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
1136	chr2	72330333	72330334	rs11696009	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p13.2		rs11696009-?	NR	3E-14		0.0159726	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1137	chr2	72356448	72356449	rs707718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs707718-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1137	chr2	72359311	72359312	rs2241059	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.2	CYP26B1	rs2241059-?	NR	3E-13		0.03691933	[0.027-0.047] unit increase	Illumina [27896057] (imputed)	N
1137	chr2	72360159	72360160	rs2286965	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.2	CYP26B1	rs2286965-?	NR	3E-14		0.06112141	[0.045-0.077] unit increase	Illumina [27896057] (imputed)	N
1137	chr2	72361504	72361505	rs3768644	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p13.2	NR	rs3768644-G	NR	1E-7		1.098901	[NR]	Illumina [7158791] (imputed)	N
1137	chr2	72361504	72361505	rs3768644	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2p13.2	CYP26B1	rs3768644-G	0.899	7E-9		1.1061947	[1.07-1.14]	Affymetrix, Illumina [9005918] (imputed)	N
1137	chr2	72361864	72361865	rs2241058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p13.2		rs2241058-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1137	chr2	72368189	72368190	rs3768641	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p13.2	NR	rs3768641-G	0.077	3E-6	(IFNalpha_STAT4_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
1137	chr2	72377383	72377384	rs28503372	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.2	CYP26B1, EXOC6B	rs28503372-A	0.908686	3E-12	(N-acetylleucine)	0.298	[0.21-0.38] unit decrease	Illumina [13039987] (imputed)	N
1137	chr2	72377383	72377384	rs28503372	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.2	CYP26B1, EXOC6B	rs28503372-A	0.908686	3E-12	(N-acetylleucine)	0.298	[0.21-0.38] unit decrease	Illumina [13039987] (imputed)	N
1137	chr2	72388694	72388695	rs561569797	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2p13.2	Intergenic	rs561569797-?	NR	4E-6		16.91	[5.08-56.3]	Illumina [8600000] (imputed)	N
1137	chr2	72440776	72440777	rs13423761	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.2	EXOC6B	rs13423761-A	0.327	6E-10		0.0124	[0.0085-0.0163] unit increase	Affymetrix [18391927] (imputed)	N
1137	chr2	72446752	72446753	rs4852285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.2		rs4852285-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1138	chr2	72483328	72483329	rs10193543	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2p13.2	EXOC6B	rs10193543-T	0.8364	3E-9		0.1391	[0.093-0.185] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1138	chr2	72500693	72500694	rs56143801	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p13.2	NR	rs56143801-G	0.840884	5E-8		0.0152194	[0.0098-0.0207] unit increase	NR [NR]	N
1138	chr2	72507794	72507795	rs72837105	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2p13.2	EXOC6B	rs72837105-T	0.145242	8E-6		1.852	[1.412 - 2.428]	Illumina [5396854] (imputed)	N
1138	chr2	72508466	72508467	rs6758462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p13.2		rs6758462-G	NR	2E-8		0.0142	[0.0093-0.0191] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1138	chr2	72572734	72572735	rs138296890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p13.2		rs138296890-C	0.03038	6E-27		0.0720642	[0.059-0.085] unit increase	Illumina [13479295] (imputed)	N
1138	chr2	72572734	72572735	rs138296890	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.2	EXOC6B	rs138296890-?	NR	7E-38		0.12311019	[0.1-0.14] unit increase	Illumina [27896057] (imputed)	N
1138	chr2	72601994	72601995	rs115075175	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p13.2	EXOC6B, CYP26B1, SPR, EMX1, SFXN5	rs115075175-?		7E-6	(dominant)	0.717	[NR] unit decrease	Illumina [1492601] (imputed)	N
1138	chr2	72601994	72601995	rs115075175	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	2p13.2	EXOC6B, CYP26B1, SPR, EMX1, SFXN5	rs115075175-?		5E-6	(additive)	0.716	[0.41-1.02] unit decrease	Illumina [1492601] (imputed)	N
1139	chr2	72703940	72703941	rs115600982	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2p13.2	NR	rs115600982-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
1139	chr2	72719738	72719739	rs570536175	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2p13.2	NR	rs570536175-?	NR	6E-6		1.17789	[0.67-1.69] unit increase	NR [13958389] (imputed)	N
1140	chr2	72752938	72752939	rs4852873	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p13.2		rs4852873-G	0.23	2E-16		8.24	z score increase	Affymetrix [9061022] (imputed)	N
1140	chr2	72783879	72783879	rs5832086	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 198)	19,670 European ancestry individuals	NA	2p13.2		rs5832086-?	NR	2E-8				NR [9705931] (imputed)	N
1141	chr2	72936184	72936185	rs183892997	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	2p13.2	Intergenic	rs183892997-?		9E-6		159.0	[88.83-229.17] unit increase	Illumina [~ 10000000] (imputed)	N
1141	chr2	72978325	72978326	rs1911690	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p13.2		rs1911690-C	0.23	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
1141	chr2	72978325	72978326	rs1911690	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2p13.2	NR	rs1911690-C	0.2479	2E-9				NR [9056863] (imputed)	N
1142	chr2	73013353	73013354	rs79097900	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	2p13.2		rs79097900-G	NR	7E-7		0.9349	unit increase	Illumina [NR] (imputed)	N
1142	chr2	73013835	73013836	rs7593084	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	2p13.2	NR	rs7593084-C	0.47	8E-6	(AA)	3.46	[1.99-4.93] bpm decrease	Illumina [at least 1100000] (imputed)	N
1142	chr2	73056386	73056387	rs140747023	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p13.2	NR	rs140747023-G	0.01394	2E-8	(SEPT11)	0.03475	NR unit increase	Illumina [1671387] (imputed)	N
1142	chr2	73069298	73069299	rs12619068	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	2p13.2	NR	rs12619068-C	0.47	8E-6	(AA)	3.46	[2.01-4.91] bpm decrease	Illumina [at least 1100000] (imputed)	N
1142	chr2	73114351	73114352	rs1876487	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p13.2	EXOC6B, SPR	rs1876487-A		4E-6		0.205	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1142	chr2	73114351	73114352	rs1876487	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p13.2	EXOC6B, SPR	rs1876487-A		2E-9		0.162	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1142	chr2	73115996	73115997	rs6730083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.2		rs6730083-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1142	chr2	73124596	73124597	rs115364062	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2p13.2		rs115364062-G	0.99147	4E-8		0.131374	[0.084-0.178] unit decrease	NR [11722792] (imputed)	N
1143	chr2	73157394	73157395	rs999494	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p13.2	NR	rs999494-?	NR	3E-10		1.0760556	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1143	chr2	73157394	73157395	rs999494	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p13.2	EMX1	rs999494-C	NR	1E-8		1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
1143	chr2	73157394	73157395	rs999494	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p13.2	EMX1	rs999494-C	NR	2E-10		1.0822511	[1.06-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1143	chr2	73161550	73161551	rs2077586	31591465	Bigdeli TB	2019-10-07	Mol Psychiatry	Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry.	Schizophrenia or schizoaffective disorder	6,152 African ancestry cases, 1,234 Latino cases, 34,241 European and East Asian ancestry cases, 3,918 African ancestry controls, 3,090 Latino controls, 45,604 European and East Asian ancestry controls, 1,235 European ancestry trios	NA	2p13.2	NR	rs2077586-?	NR	4E-8				Illumina [NR] (imputed)	N
1143	chr2	73161550	73161551	rs2077586	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p13.2	NR	rs2077586-A	NR	2E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1143	chr2	73204202	73204203	rs62148129	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p13.2	SFXN5	rs62148129-A	NR	2E-7	(EA)	1.0857763	[1.05-1.12]	Illumina [6627481] (imputed)	N
1143	chr2	73226509	73226510	rs2421096	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	2p13.2	SFXN5	rs2421096-T	0.093134286	3E-6		0.237898	[0.14-0.34] unit increase	Illumina [6969139] (imputed)	N
1143	chr2	73234431	73234432	rs11695051	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	2p13.2	SFXN5	rs11695051-T	0.94	4E-9	(lauric acid)	1.84	[-0.3356-4.0156] unit increase	Illumina [~ 932000] (imputed)	N
1144	chr2	73336806	73336807	rs7602651	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2p13.2	RAB11FIP5	rs7602651-?	NR	3E-8		0.013407344	[0.0087-0.0181] unit increase	NR [7306098]	N
1144	chr2	73347284	73347285	rs2901412	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	2p13.2	RAB11FIP5	rs2901412-A	0.089420286	2E-6		0.241533	[0.14-0.34] unit increase	Illumina [6969139] (imputed)	N
1144	chr2	73351805	73351806	rs58649746	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (spine vs radius & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	2p13.2	RAB11FIP5	rs58649746-G	0.87	5E-9	(EA, female)	0.42	[0.28-0.56] unit decrease	Illumina [NR] (imputed)	N
1144	chr2	73351805	73351806	rs58649746	29240982	Mitchell JA	2017-12-14	J Bone Miner Res	Multi-dimensional bone density phenotyping reveals new insights in to genetic regulation of the pediatric skeleton.	Pediatric areal bone mineral density (spine vs radius & hip discordant skeletal phenotype)	470 European ancestry females, 463 European ancestry males, 256 African and Asian ancestry females, 210 African and Asian ancestry males	238 European ancestry females, 246 European ancestry males	2p13.2	RAB11FIP5	rs58649746-G	0.86	5E-9	(female)	0.42	[0.28-0.56] unit decrease	Illumina [NR] (imputed)	N
1144	chr2	73358291	73358292	rs10865397	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p13.2	ENSG00000272702	rs10865397-A	NR	1E-8		0.017261108	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1144	chr2	73358529	73358530	rs72841887	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.2	RAB11FIP5	rs72841887-C	0.05	2E-10	(N-acetylarginine,  N-acetylcitrulline,  X-13698)	0.013	[0.0091-0.0169] unit increase	Illumina [7750367] (imputed)	N
1144	chr2	73364252	73364253	rs112227367	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	2p13.2		rs112227367-?	NR	3E-9				NR [7857346] (imputed)	N
1144	chr2	73367244	73367245	rs1430346	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.2	RAB11FIP5	rs1430346-C	0.28	5E-18	(N2-acetyllysine,  N-alpha-acetylornithine,  X-12124,  X-12125,  X-15666)	0.008	[0.006-0.01] unit increase	Illumina [7750367] (imputed)	N
1144	chr2	73367244	73367245	rs1430346	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.2	RAB11FIP5	rs1430346-C	0.28	2E-12	(N2,  N6-diacetyllysine,  N-acetylasparagine,  N-acetylglutamine,  N-acetylhistidine,  N-acetylleucine)	0.006	[0.004-0.008] unit increase	Illumina [7750367] (imputed)	N
1144	chr2	73372211	73372212	rs72841902	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p13.2	RAB11FIP5	rs72841902-A	0.2885	4E-11		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1144	chr2	73387227	73387228	rs6732160	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2p13.2		rs6732160-?	NR	1E-10				NR [7857346] (imputed)	N
1144	chr2	73387227	73387228	rs6732160	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p13.2	NOTO	rs6732160-A	NR	2E-10		0.019895159	[0.014-0.026] unit increase	Affymetrix [NR]	N
1144	chr2	73387385	73387386	rs6760964	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p13.2	NR	rs6760964-C	0.405567	7E-10		0.03938438	[0.027-0.052] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1144	chr2	73387385	73387386	rs6760964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p13.2	Intergenic	rs6760964-C	0.614	9E-10	(MTAG)	0.0144	[0.0097-0.0191] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1144	chr2	73387385	73387386	rs6760964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p13.2	Intergenic	rs6760964-C	0.614	6E-10		0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1144	chr2	73387385	73387386	rs6760964	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.2	NOTO	rs6760964-C	NR	4E-10		6.27	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1145	chr2	73401780	73401781	rs6710726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2p13.2		rs6710726-G	NR	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1145	chr2	73419042	73419043	rs78944489	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p13.2	NR	rs78944489-C	NR	2E-6		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1145	chr2	73470496	73470497	rs2303907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p13.2	Intergenic	rs2303907-T	0.5225	2E-10	(MTAG)	0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1145	chr2	73470496	73470497	rs2303907	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.2	CCT7	rs2303907-T	NR	2E-9		6.035	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1145	chr2	73483056	73483057	rs1045902	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p13.2	FBXO41	rs1045902-T	NR	6E-11		0.019544933	[0.014-0.025] unit increase	Affymetrix [NR]	N
1145	chr2	73490411	73490412	rs34363861	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p13.2		rs34363861-A	0.5194	9E-10		0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1146	chr2	73535525	73535526	rs34437050	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	2p13.1		rs34437050-A	NR	5E-6		0.0148886	[0.0084-0.0214] years increase	NR [7400000] (imputed)	N
1146	chr2	73535525	73535526	rs34437050	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	2p13.1		rs34437050-A	NR	1E-7		0.024436	[0.015-0.034] years increase	NR [7400000] (imputed)	N
1146	chr2	73535525	73535526	rs34437050	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2p13.1		rs34437050-A	NR	2E-16		0.13161542	[0.1-0.16] years increase	NR [7400000] (imputed)	N
1146	chr2	73536688	73536689	rs59072247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2p13.1		rs59072247-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1146	chr2	73540043	73540044	rs35327298	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	2p13.1	EGR4, ALMS1	rs35327298-?	NR	1E-8		0.159	[-0.214-0.105] unit decrease	Illumina [12039491]	N
1146	chr2	73543992	73543993	rs146079001	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	U6, ALMS1	rs146079001-C	0.0686555	2E-24	(N-acetylasparagine)	0.482	[0.39-0.57] unit decrease	Illumina [13039987] (imputed)	N
1146	chr2	73561484	73561485	rs7560272	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p13.1	RPSAP28	rs7560272-T	NR	1E-7		1.0570824	[1.04-1.08]	Illumina [6627481] (imputed)	N
1146	chr2	73561484	73561485	rs7560272	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p13.1	intergenic	rs7560272-T	NR	6E-7		1.0537407	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1146	chr2	73565142	73565143	rs11126396	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.1	ENSG00000214484	rs11126396-T	NR	2E-8		5.599	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1146	chr2	73565292	73565293	rs11898362	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.1	NR	rs11898362-A	NR	2E-9		5.978	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1146	chr2	73610115	73610116	rs17008991	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.1	NR	rs17008991-A	NR	2E-8		5.65	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1146	chr2	73610742	73610743	rs10165862	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2p13.1	ALMS1	rs10165862-T	NR	5E-9		0.018422538	[0.012-0.025] unit decrease	Affymetrix [NR]	N
1146	chr2	73623438	73623439	rs56145559	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	2p13.1		rs56145559-?	NR	1E-8		0.0189	NR unit increase	NR [4425810] (imputed)	N
1146	chr2	73623438	73623439	rs56145559	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p13.1	NR	rs56145559-T	NR	1E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
1146	chr2	73627043	73627044	rs10184268	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2p13.1	NR	rs10184268-T	0.239	8E-9		0.011646146	[0.0077-0.0156] unit increase	Affymetrix [NR] (imputed)	N
1146	chr2	73631563	73631564	rs11899902	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2p13.1	NR	rs11899902-?		5E-8				NR [8377093]	N
1146	chr2	73643626	73643627	rs11684858	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p13.1	Intergenic	rs11684858-?		4E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
1146	chr2	73643626	73643627	rs11684858	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2p13.1	Intergenic	rs11684858-?		7E-6		1.79	[1.39-2.30]	Illumina [7645193] (imputed)	N
1146	chr2	73648059	73648060	rs200568555	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	2p13.1	NR	rs200568555-?	NR	9E-6		0.591917	[0.33-0.85] unit increase	NR [13958389] (imputed)	N
1146	chr2	73652627	73652628	rs7598396	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1	rs7598396-?	NR	2E-56	(X-12510)	0.1317	[NR] unit decrease	Affymetrix [655658]	N
1146	chr2	73652627	73652628	rs7598396	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1	rs7598396-?	NR	1E-149	(Nacetylornithine)	0.2137	[NR] unit decrease	Affymetrix [655658]	N
1146	chr2	73653137	73653138	rs6753344	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1	rs6753344-?	NR	7E-36	(X-11787)	0.03979	[NR] unit decrease	Affymetrix [655658]	N
1147	chr2	73679012	73679013	rs45608038	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD24+ CD27+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p13.1		rs45608038-G	0.04211	2E-8		0.3527	[0.23-0.48] unit increase	Illumina [18238311] (imputed)	N
1147	chr2	73679279	73679280	rs6546838	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2p13.1	ALMS1	rs6546838-A	0.76	8E-20	(EA)	0.0093	[0.0073-0.0113] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1147	chr2	73679279	73679280	rs6546838	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, NAT8B, STAMBP, TPRKB, EGR4, FBXO41	rs6546838-?	NR	5E-14	(Arginine / Citrulline)	0.04139608	[0.031-0.052] unit decrease	Affymetrix [2619023] (imputed)	N
1147	chr2	73679279	73679280	rs6546838	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, NAT8B, STAMBP, TPRKB, EGR4, FBXO41	rs6546838-?	NR	2E-15	(Arginine / Glycine)	0.0073680445	[0.0056-0.0092] unit decrease	Affymetrix [2619023] (imputed)	N
1147	chr2	73679279	73679280	rs6546838	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, NAT8B, STAMBP, TPRKB, EGR4, FBXO41	rs6546838-?	NR	2E-14	(Arginine / Ornithine)	0.021730857	[0.016-0.027] unit decrease	Affymetrix [2619023] (imputed)	N
1147	chr2	73679279	73679280	rs6546838	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, NAT8B, STAMBP, TPRKB, EGR4, FBXO41	rs6546838-?	NR	1E-12	(Arginine)	0.10081615	[0.073-0.128] unit decrease	Affymetrix [2619023] (imputed)	N
1147	chr2	73713028	73713029	rs10195357	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10195357-G	0.22	9E-30	(N-acetylhistidine)	0.218	[0.18-0.26] unit increase	Illumina [7750367] (imputed)	N
1147	chr2	73713028	73713029	rs10195357	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10195357-G	0.22	1E-47	(N-acetylphenylalanine)	0.499	[0.43-0.57] unit increase	Illumina [7750367] (imputed)	N
1147	chr2	73717655	73717656	rs10193972	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.1	NR	rs10193972-?	NR	1E-7		5.308	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1147	chr2	73725638	73725638	rs111770942	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2p13.1	ALMS1	rs111770942-T	0.751	2E-29		0.696	[0.57-0.82] unit decrease	Affymetrix [NR] (imputed)	N
1147	chr2	73725638	73725638	rs111770942	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p13.1	ALMS1	rs111770942-T	0.765	3E-37		0.0053	[0.0045-0.0061] unit decrease	Affymetrix [NR] (imputed)	N
1147	chr2	73730173	73730174	rs7607014	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs7607014-G	0.22	8E-25	(N-acetylkynurenine,  N-acetylphenylalanine,  N-acetyltryptophan,  N-acetyltyrosine)	0.01	[0.008-0.012] unit increase	Illumina [7750367] (imputed)	N
1147	chr2	73730173	73730174	rs7607014	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs7607014-G	0.22	4E-24	(N-acetylkynurenine (2))	0.737	[0.59-0.88] unit increase	Illumina [7750367] (imputed)	N
1147	chr2	73739847	73739848	rs35273932	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	2p13.1	ALMS1	rs35273932-?	NR	2E-8		0.116	[0.075-0.157] unit increase	Illumina [12039492]	N
1147	chr2	73743981	73743982	rs9309473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs9309473-G	NR	7E-68		0.049	[0.044-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1147	chr2	73743981	73743982	rs9309473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2p13.1	NR	rs9309473-G	NR	7E-23		0.0278	[0.022-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1147	chr2	73743981	73743982	rs9309473	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs9309473-G	NR	4E-70		0.0499	[0.044-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1147	chr2	73743981	73743982	rs9309473	21931564	Nicholson G	2011-09-08	PLoS Genet	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	Metabolite levels	142 European ancestry female twins	202 European ancestry individuals	2p13.1	NAT8, TPRKB, DUSP11, ALMS1	rs9309473-G	NR	1E-11	(N-ACu)	1.1	[0.85-1.35] unit increase	Illumina [2541644] (imputed)	N
1147	chr2	73746922	73746923	rs11884776	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	2p13.1	ALMS1	rs11884776-C	0.22	6E-17	(1.6975, N-Acetylated compunds)	0.35	[NR] unit increase	Illumina [713870] (imputed)	N
1147	chr2	73752367	73752368	rs10469966	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p13.1	NR	rs10469966-A	0.25	2E-8		0.00713239	[0.0047-0.0096] unit increase	NR [9732723] (imputed)	N
1147	chr2	73752367	73752368	rs10469966	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p13.1	NAT8	rs10469966-A	0.25	1E-51	(X-12093)	0.102	[0.088-0.116] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1147	chr2	73758802	73758803	rs2421552	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p13.1		rs2421552-C	0.774	2E-9		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1147	chr2	73758802	73758803	rs2421552	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2p13.1	ALMS1	rs2421552-T	0.2329	7E-37	(EA)	0.0053	[0.0045-0.0061] unit increase	Affymetrix [NR] (imputed)	N
1147	chr2	73758802	73758803	rs2421552	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p13.1	NR	rs2421552-T	NR	4E-8		5.475	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1147	chr2	73765905	73765906	rs140224167	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p13.1	NR	rs140224167-?	NR	1E-9				Illumina [7760689] (imputed)	N
1147	chr2	73767896	73767897	rs4500972	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2p13.1	NAT8	rs4500972-A	NR	3E-18		0.0108	[0.0084-0.0132] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1147	chr2	73770076	73770077	rs6546845	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs6546845-T	0.635251	4E-32	(N-acetylhistidine)	0.272	[0.23-0.32] unit decrease	Illumina [13039987] (imputed)	N
1147	chr2	73772309	73772310	rs545159761	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs545159761-T	0.972217	4E-31	(N-acetylasparagine)	0.971	[0.81-1.14] unit decrease	Illumina [13039987] (imputed)	N
1147	chr2	73772309	73772310	rs545159761	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs545159761-T	0.972217	2E-30	(N-acetylarginine)	0.963	[0.8-1.13] unit decrease	Illumina [13039987] (imputed)	N
1147	chr2	73783770	73783770	rs377211781	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2p13.1		rs377211781-TG	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1147	chr2	73785357	73785358	rs6546847	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	2p13.1	ALMS1	rs6546847-A	0.22	5E-161	(2.0375, N-Acetylated compunds)	0.91	[NR] unit increase	Illumina [713870] (imputed)	N
1147	chr2	73785357	73785358	rs6546847	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	2p13.1	ALMS1	rs6546847-A	0.22	1E-17	(2.7875, N-Acetylated compunds)	0.34	[NR] unit increase	Illumina [713870] (imputed)	N
1148	chr2	73806631	73806632	rs7424690	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs7424690-T	0.730555	6E-144	(N-acetylphenylalanine)	0.652	[0.6-0.7] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73812885	73812886	rs28879089	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs28879089-G	0.731296	6E-160	(N-acetylleucine)	0.698	[0.65-0.75] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73812885	73812886	rs28879089	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1	rs28879089-G	0.731296	6E-160	(N-acetylleucine)	0.698	[0.65-0.75] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73813944	73813945	rs7582606	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs7582606-A	0.731693	1E-35	(N2,N5-diacetylornithine)	0.284	[0.24-0.33] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73818935	73818936	rs13391552	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, NAT8	rs13391552-?	NR	9E-22	(X-12093)	0.1114	[NR] unit increase	Affymetrix [655658]	N
1148	chr2	73818935	73818936	rs13391552	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, NAT8	rs13391552-?	NR	9E-149	(Nacetylornithine)	0.2127	[NR] unit decrease	Affymetrix [655658]	N
1148	chr2	73818935	73818936	rs13391552	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2p13.1	NAT8	rs13391552-A	0.216	5E-252	(SM-2 + 2 other traits)	0.371	[NR] unit decrease	Affymetrix, Illumina [534665]	N
1148	chr2	73820107	73820108	rs6710438	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, NAT8	rs6710438-?	NR	3E-37	(X-11787)	0.04063	[NR] unit decrease	Affymetrix [655658]	N
1148	chr2	73829371	73829372	rs1052162	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, NAT8	rs1052162-?	NR	1E-54	(X-12510)	0.1274	[NR] unit decrease	Affymetrix [655658]	N
1148	chr2	73832458	73832459	rs2421667	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2p13.1	NR	rs2421667-C	0.637	4E-10		0.0100053	[0.0069-0.0131] unit decrease	NR [9732723] (imputed)	N
1148	chr2	73832785	73832786	rs7587577	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs7587577-?	NR	6E-13	(N-acetyl-3-methylhistidine)	0.39	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73832785	73832786	rs7587577	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs7587577-?	NR	1E-41	(N-acetylasparagine)	0.72	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73832785	73832786	rs7587577	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2p13.1	ALMS1	rs7587577-C	NR	5E-12		0.948	[0.68-1.21] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1148	chr2	73832785	73832786	rs7587577	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2p13.1	ALMS1	rs7587577-C	0.76	3E-8	(EA)	1.037	[0.67-1.4] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1148	chr2	73834033	73834034	rs6546854	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs6546854-?	NR	1E-21	(N-acetylleucine)	0.53	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73834033	73834034	rs6546854	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1	rs6546854-A	0.731648	5E-128	(N-acetyltyrosine)	0.621	[0.57-0.67] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73837750	73837751	rs6546856	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2p13.1	NR	rs6546856-T	0.235586	2E-8		0.041352034	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1148	chr2	73837750	73837751	rs6546856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2p13.1	Intergenic	rs6546856-T	0.7565	1E-13	(MTAG)	0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1148	chr2	73837750	73837751	rs6546856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p13.1	Intergenic	rs6546856-T	0.754	2E-11	(MTAG)	0.0101	[0.0072-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1148	chr2	73837750	73837751	rs6546856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p13.1	Intergenic	rs6546856-T	0.7554	1E-12	(MTAG)	0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1148	chr2	73837750	73837751	rs6546856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2p13.1	Intergenic	rs6546856-T	0.7554	2E-8		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1148	chr2	73837954	73837955	rs6546857	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Methionine sulfone levels	291 European ancestry individuals	NA	2p13.1		rs6546857-A	0.7617	1E-11		0.137	unit increase	Illumina [7049691] (imputed)	N
1148	chr2	73837954	73837955	rs6546857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2p13.1	Intergenic	rs6546857-A	0.7645	2E-11	(MTAG)	0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1148	chr2	73837954	73837955	rs6546857	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p13.1	ALMS1	rs6546857-A	0.477	1E-23		0.09	[0.07-0.10] unit increase	Affymetrix [~ 2500000] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs13409366-?	NR	7E-37	(N-acetylkynurenine)	0.33	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs13409366-?	NR	7E-37	(N-acetylcitrulline)	0.68	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs13409366-?	NR	7E-29	(N-acetylglutamine)	0.62	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs13409366-A	0.731509	6E-252	(N2-acetyllysine)	0.877	[0.83-0.93] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs13409366-A	0.731509	5E-266	(N-acetyl-1-methylhistidine*)	0.844	[0.8-0.89] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73846766	73846767	rs13409366	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1, NAT8	rs13409366-A	0.731509	6E-252	(N2-acetyllysine)	0.877	[0.83-0.93] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73847229	73847230	rs6726694	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.1	NR	rs6726694-?	NR	8E-8		5.376	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2p13.1		rs6546861-C	0.772211	9E-12		0.0287253	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	9E-182	(N-acetyl-1-methylhistidine,  N-delta-acetylornithine,  X-11357,  X-23590)	0.024	[0.022-0.026] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	9E-48	(X - 23590)	0.289	[0.25-0.33] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	6E-163	(N-acetylarginine)	0.537	[0.5-0.58] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	3E-249	(N-acetylcitrulline)	0.918	[0.87-0.97] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	2E-123	(X - 11357)	0.873	[0.8-0.95] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73849860	73849861	rs6546861	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6546861-T	0.21	1E-111	(N-acetyl-1-methylhistidine)	0.731	[0.67-0.8] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73850819	73850820	rs6711001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2p13.1	NR	rs6711001-G	0.22903	3E-12		0.015238	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1148	chr2	73850819	73850820	rs6711001	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6711001-G	0.21	7E-14	(1-methylhistidine, homocitrulline, X-23587)	0.008	[0.006-0.01] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73850819	73850820	rs6711001	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6711001-G	0.21	2E-257	(X - 12124)	0.709	[0.67-0.75] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73852504	73852505	rs6718843	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6718843-A	0.21	5E-24	(homocitrate, X-24519)	0.01	[0.008-0.012] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73852504	73852505	rs6718843	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs6718843-A	0.21	3E-44	(X - 24519)	0.428	[0.37-0.49] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73853829	73853830	rs62149809	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p13.1	NR	rs62149809-A	0.986	6E-9		1.159	[1.11-1.21]	Affymetrix, Illumina [NR] (imputed)	N
1148	chr2	73854393	73854394	rs111540621	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	N-delta-acetylornithine levels	291 European ancestry individuals	NA	2p13.1		rs111540621-C	0.7871	3E-31		0.4618	unit increase	Illumina [7049691] (imputed)	N
1148	chr2	73854393	73854394	rs111540621	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs111540621-C	0.735564	2E-30	(2-hydroxyoctanoate)	0.296	[0.25-0.35] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73854393	73854394	rs111540621	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1, NAT8	rs111540621-C	0.735564	2E-30	(2-hydroxyoctanoate)	0.296	[0.25-0.35] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73854393	73854394	rs111540621	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs111540621-G	0.21	3E-43	(N-acetyl-3-methylhistidine)	0.873	[0.75-1] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73854393	73854394	rs111540621	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs111540621-G	0.21	2E-46	(N-alpha-acetylornithine)	0.35	[0.3-0.4] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73855385	73855386	rs2947860	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs2947860-A	0.735777	8E-28	(N-acetylalliin)	0.244	[0.2-0.29] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs10178409-G	0.764003	1E-18	(N-acetyltryptophan)	0.233	[0.18-0.28] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs10178409-G	0.764003	1E-10	(pyrraline)	0.172	[0.12-0.22] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1, NAT8	rs10178409-G	0.764003	1E-18	(N-acetyltryptophan)	0.233	[0.18-0.28] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1, NAT8	rs10178409-G	0.764003	1E-10	(pyrraline)	0.172	[0.12-0.22] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	2p13.1	ALMS1, NAT8	rs10178409-T	NR	7E-18	(Acetylornithine/Propionylcarnitine)	0.448751	[0.35-0.55] unit decrease	Illumina [up to 9281895] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	2p13.1	ALMS1, NAT8	rs10178409-T	NR	6E-18	(Tryptophan/Acetylornithine)	0.44248	[0.34-0.54] unit increase	Illumina [up to 9281895] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	2p13.1	ALMS1, NAT8	rs10178409-T	NR	2E-16	(Tyrosine/Acetylornithine)	0.422951	[0.32-0.52] unit increase	Illumina [up to 9281895] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	2p13.1	ALMS1, NAT8	rs10178409-T	NR	1E-11	(Acetylornithine)	0.342181	[0.24-0.44] unit decrease	Illumina [up to 9281895] (imputed)	N
1148	chr2	73855506	73855507	rs10178409	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	2p13.1	NAT8	rs10178409-T	0.22	1E-95	(2.031 ppm)	0.1988	[NR] unit increase	Affymetrix [620456]	N
1148	chr2	73858206	73858207	rs149166184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1, NAT8	rs149166184-A	0.907423	1E-38	(N-acetyltryptophan)	0.515	[0.44-0.59] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73858206	73858207	rs149166184	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1, NAT8	rs149166184-A	0.907423	1E-38	(N-acetyltryptophan)	0.515	[0.44-0.59] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73858964	73858965	rs10201159	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10201159-C	0.21	1E-363	(N-acetylarginine, N-acetylcitrulline, X-13698)	0.03	[0.028-0.032] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73858964	73858965	rs10201159	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10201159-C	0.21	4E-280	(X - 13698)	0.81	[0.76-0.86] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73858964	73858965	rs10201159	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10201159-C	0.21	2E-570	(X - 12125)	1.657	[1.59-1.72] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	NAT8	rs4547554-C	0.268423	1E-250	(N-delta-acetylornithine)	0.827	[0.78-0.87] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	5E-13	(N-acetylalanine, N-acetylmethionine, N-acetylmethionine sulfoxide, sarcosine, X-12199)	0.007	[0.005-0.009] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	2E-165	(N2, N6-diacetyllysine, N-acetylasparagine, N-acetylglutamine, N-acetylhistidine, N-acetylleucine)	0.023	[0.021-0.025] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	7E-159	(N-acetylasparagine)	0.784	[0.73-0.84] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	4E-113	(N-acetylglutamine)	0.8	[0.73-0.87] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	3E-35	(N-acetylleucine)	0.437	[0.37-0.51] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73867861	73867862	rs4547554	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs4547554-C	0.21	2E-84	(N-acetylmethionine sulfoxide)	0.614	[0.55-0.68] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	33283231	Calvo-Serra B	2020-12-05	Hum Mol Genet	Urinary metabolite quantitative trait loci in children and their interaction with dietary factors.	N-acetyl neuraminic acid levels	996 European ancestry individuals	NA	2p13.1		rs13538-G	0.2192	5E-20		0.4925835	unit decrease	Illumina [283704]	N
1148	chr2	73868327	73868328	rs13538	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2p13.1	NAT8	rs13538-G		2E-8		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1148	chr2	73868327	73868328	rs13538	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13538-G	0.21	4E-635	(N2-acetyllysine, N-alpha-acetylornithine, X-12124, X-12125, X-15666)	0.035	[0.033-0.037] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13538-G	0.21	9E-15	(X - 12379)	0.241	[0.18-0.3] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13538-G	0.21	3E-84	(N-acetylpyrraline)	0.747	[0.67-0.82] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13538-G	0.21	1E-149	(N2,N6-diacetyllysine)	0.735	[0.68-0.79] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13538-G	0.21	1E-104	(X - 15666)	0.875	[0.8-0.95] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73868327	73868328	rs13538	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	2p13.1	ALMS1	rs13538-A	NR	3E-16		0.0092	[0.007-0.0114] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1148	chr2	73868327	73868328	rs13538	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	2p13.1	NAT8	rs13538-A	0.78	5E-498	(N-acetylornithine/myo-inositol)	0.223	[0.21-0.23] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1148	chr2	73868327	73868328	rs13538	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p13.1	NAT8	rs13538-A	0.78	8E-157	(X-12510--2-aminooctanoic acid)	0.119	[0.11-0.13] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1148	chr2	73868327	73868328	rs13538	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	2p13.1	NAT8	rs13538-A	0.48	4E-66	(N-acetylornithine)	0.3	[NR] unit increase	Affymetrix [2341704] (imputed)	N
1148	chr2	73868327	73868328	rs13538	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	2p13.1	NAT8	rs13538-A		2E-23		0.09	[0.07-0.10] unit increase	Affymetrix [~ 2500000] (imputed)	N
1148	chr2	73868327	73868328	rs13538	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	2p13.1	NAT8, NAT8B, ALMS1	rs13538-G	0.23	5E-14	(eGFRcrea)	0.01	[0.005-0.013] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1148	chr2	73868976	73868977	rs72635970	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p13.1		rs72635970-G	0.0446	3E-8		0.3399	[0.22-0.46] unit decrease	Illumina [18238311] (imputed)	N
1148	chr2	73868976	73868977	rs72635970	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Memory B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p13.1		rs72635970-G	0.0446	5E-9		0.3572	[0.24-0.48] unit increase	Illumina [18238311] (imputed)	N
1148	chr2	73870009	73870010	rs4852954	33430853	Ustinova M	2021-01-11	BMC Med Genomics	Novel susceptibility loci identified in a genome-wide association study of type 2 diabetes complications in population of Latvia.	Macrovascular complications in type 2 diabetes	333 European ancestry cases, 226 European ancestry controls	NA	2p13.1	NAT8	rs4852954-T	0.31	1E-8		2.27	[2.71-3.01]	Illumina [5378539] (imputed)	N
1148	chr2	73871664	73871665	rs13384756	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13384756-T	0.21	2E-37	(X - 24809)	0.86	[0.73-0.99] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73871664	73871665	rs13384756	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13384756-T	0.21	1E-109	(X - 12093)	1.118	[1.02-1.22] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73871688	73871689	rs13410232	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.1	NR	rs13410232-T	0.17845	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
1148	chr2	73871688	73871689	rs13410232	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13410232-T	0.21	5E-19	(N6-carboxyethyllysine)	0.185	[0.14-0.23] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73871688	73871689	rs13410232	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2p13.1	ALMS1, NAT8	rs13410232-T	0.2056	7E-25		10.301	NR z score increase	Illumina [26237160] (imputed)	N
1148	chr2	73876040	73876041	rs13431529	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs13431529-?	NR	3E-31	(N2-acetyllysine)	0.61	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73876040	73876041	rs13431529	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs13431529-G	0.733943	3E-87	(2-aminooctanoate)	0.509	[0.46-0.56] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73876040	73876041	rs13431529	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs13431529-G	0.733943	2E-129	(N-acetylglutamine)	0.631	[0.58-0.68] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73876040	73876041	rs13431529	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13431529-C	0.21	2E-109	(N-delta-acetylornithine)	1.057	[0.96-1.15] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73877054	73877055	rs10189885	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs10189885-A	0.738325	7E-308	(N-acetylasparagine)	0.981	[0.93-1.03] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73877054	73877055	rs10189885	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs10189885-A	0.738325	7E-281	(N-acetylarginine)	0.935	[0.88-0.99] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73877054	73877055	rs10189885	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs10189885-A	0.738325	5E-119	(N-acetylkynurenine (2))	0.604	[0.55-0.65] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73877054	73877055	rs10189885	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs10189885-A	0.738325	2E-103	(alliin)	0.52	[0.47-0.57] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73877218	73877219	rs10168931	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs10168931-?	NR	1E-32	(N-acetylarginine)	0.66	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73877218	73877219	rs10168931	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10168931-A	0.21	9E-66	(N-acetyltyrosine)	0.654	[0.58-0.73] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73877218	73877219	rs10168931	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs10168931-A	0.21	8E-357	(N2-acetyllysine)	0.888	[0.84-0.93] unit increase	Illumina [7750367] (imputed)	N
1148	chr2	73883071	73883072	rs13408433	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13408433-A	0.21	6E-20	(homocitrulline)	0.406	[0.32-0.49] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73883071	73883072	rs13408433	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2p13.1	NAT8	rs13408433-A	0.21	2E-30	(X - 23423)	0.326	[0.27-0.38] unit decrease	Illumina [7750367] (imputed)	N
1148	chr2	73887633	73887634	rs11126412	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs11126412-?	NR	5E-23	(N-acetyl-1-methylhistidine)	0.52	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73887633	73887634	rs11126412	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs11126412-?	NR	2E-11	(N-acetylphenylalanine)	0.36	[NR] unit increase	Illumina [14760605] (imputed)	N
1148	chr2	73895764	73895765	rs6546869	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2p13.1	ALMS1P1	rs6546869-A	0.2289	1E-76		0.0059	[0.0051-0.0067] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1148	chr2	73895764	73895765	rs6546869	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2p13.1	ALMS1P1	rs6546869-A	0.2249	1E-73		0.0061	[0.0053-0.0069] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1148	chr2	73895764	73895765	rs6546869	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2p13.1	ALMS1P1	rs6546869-G	0.77	7E-8		1.0588734	[1.04-1.08]	Affymetrix, Illumina [9585923] (imputed)	N
1148	chr2	73895764	73895765	rs6546869	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2p13.1	ALMS1P1	rs6546869-A	0.2289	4E-6		0.0046	[0.0026-0.0066] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1148	chr2	73895764	73895765	rs6546869	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2p13.1	NAT8	rs6546869-G	0.768	6E-22		0.566	[0.34-0.79] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1148	chr2	73896602	73896603	rs6546870	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs6546870-A	0.0919852	7E-17	(N-acetylasparagine)	0.321	[0.25-0.4] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73900843	73900844	rs7579068	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs7579068-C	0.0943744	2E-18	(N-acetylcitrulline)	0.317	[0.25-0.39] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73900843	73900844	rs7579068	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs7579068-C	0.0943744	2E-14	(N-acetylarginine)	0.291	[0.22-0.37] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73900843	73900844	rs7579068	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1P	rs7579068-C	0.0943744	2E-14	(N-acetylarginine)	0.291	[0.22-0.37] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2p13.1		rs10206899-C	NR	7E-72		0.0415	[0.037-0.046] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2p13.1	ALMS1, ALMS1P, NAT8, TPRKB	rs10206899-?	NR	7E-39	(N-delta-acetylornithine)	0.69	[NR] unit decrease	Illumina [14760605] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p13.1	NAT8	rs10206899-T	0.78	8E-123	(X-11787)	0.04	[0.036-0.044] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p13.1	NAT8	rs10206899-T	0.78	5E-481	(N-acetylornithine)	0.221	[0.21-0.23] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2p13.1	NAT8	rs10206899-T	0.78	2E-14	(X-13477)	0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	NAT8	rs10206899-C	0.23	6E-9	(3-measure model)	1.1	[0.73-1.47] unit increase	Affymetrix [> 2500000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	NAT8	rs10206899-C	0.23	4E-8	(Single-measure model)	1.17	[0.76-1.58] unit increase	Affymetrix [> 2500000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	23535967	Tin A	2013-03-28	J Hum Genet	Using multiple measures for quantitative trait association analyses: application to estimated glomerular filtration rate.	Glomerular filtration rate	9,049 European ancestry individuals		2p13.1	NAT8	rs10206899-C	0.23	2E-9	(6-measure model)	1.1	[0.75-1.45] unit increase	Affymetrix [> 2500000] (imputed)	N
1148	chr2	73900899	73900900	rs10206899	20383145	Chambers JC	2010-04-11	Nat Genet	Genetic loci influencing kidney function and chronic kidney disease.	Creatinine levels	23,812 European ancestry individuals	16,626 European ancestry individuals	2p13.1	NAT8, TPRKB, DUSP11, NAT8B, ALMS1	rs10206899-G	0.22	1E-15		1.0	[0.7-1.2] % decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1148	chr2	73905590	73905591	rs6742619	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs6742619-T	0.234966	3E-68	(N-acetylcitrulline)	0.435	[0.39-0.48] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73905796	73905797	rs28525015	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P	rs28525015-C	0.887495	4E-87	(N-acetylcitrulline)	0.724	[0.65-0.8] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73906597	73906598	rs12620074	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, EGR4, FBXO41, LOC200420	rs12620074-?	NR	6E-9	(Arginine / Ornithine)	0.018603772	[0.012-0.025] unit decrease	Affymetrix [2619023] (imputed)	N
1148	chr2	73906597	73906598	rs12620074	26401656	Burkhardt R	2015-09-24	PLoS Genet	Integration of Genome-Wide SNP Data and Gene-Expression Profiles Reveals Six Novel Loci and Regulatory Mechanisms for Amino Acids and Acylcarnitines in Whole Blood.	Blood metabolite levels	2,107 European ancestry individuals	923 Sorbian (founder/genetic isolate) individuals	2p13.1	ALMS1, EGR4, FBXO41, LOC200420	rs12620074-?	NR	4E-8	(Arginine / Glycine)	0.005718135	[0.0037-0.0078] unit decrease	Affymetrix [2619023] (imputed)	N
1148	chr2	73915336	73915337	rs183424222	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P, NAT8B	rs183424222-G	0.986318	2E-12	(N-acetyltyrosine)	0.784	[0.56-1] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73919657	73919658	rs4852316	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, DUSP11, NAT8B, TPRKB	rs4852316-?	NR	5E-11	(X-12093)	0.06779	[NR] unit increase	Affymetrix [655658]	N
1148	chr2	73919657	73919658	rs4852316	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, DUSP11, NAT8B, TPRKB	rs4852316-?	NR	1E-77	(Nacetylornithine)	0.1343	[NR] unit decrease	Affymetrix [655658]	N
1148	chr2	73920270	73920271	rs111234372	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p13.1	NR	rs111234372-G	0.01045	2E-8	(SDHB)	0.1529	NR unit increase	Illumina [1671387] (imputed)	N
1148	chr2	73923582	73923583	rs10200762	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P, NAT8B	rs10200762-T	0.38741	9E-96	(N-delta-acetylornithine)	0.459	[0.42-0.5] unit decrease	Illumina [13039987] (imputed)	N
1148	chr2	73923582	73923583	rs10200762	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	ALMS1P, NAT8B	rs10200762-T	0.38741	6E-92	(N2-acetyllysine)	0.474	[0.43-0.52] unit increase	Illumina [13039987] (imputed)	N
1148	chr2	73923582	73923583	rs10200762	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	ALMS1P, NAT8B	rs10200762-T	0.38741	6E-92	(N2-acetyllysine)	0.474	[0.43-0.52] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73935945	73935946	rs188314500	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	NAT8B, TPRKB	rs188314500-G	0.984646	1E-25	(N-acetylarginine)	1.129	[0.92-1.34] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73935945	73935946	rs188314500	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	NAT8B, TPRKB	rs188314500-G	0.984646	1E-25	(N-acetylarginine)	1.129	[0.92-1.34] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73937152	73937153	rs12052539	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, DUSP11, NAT8B, TPRKB	rs12052539-?	NR	7E-33	(X-12510)	0.08472	[NR] unit decrease	Affymetrix [655658]	N
1149	chr2	73937152	73937153	rs12052539	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	ALMS1, DUSP11, NAT8B, TPRKB	rs12052539-?	NR	7E-24	(X-11787)	0.02765	[NR] unit decrease	Affymetrix [655658]	N
1149	chr2	73955570	73955571	rs17009372	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p13.1	NR	rs17009372-?	NR	3E-6		4.655	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1149	chr2	73956845	73956846	rs12713794	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	TPRKB	rs12713794-A	0.376852	8E-103	(N-acetyl-1-methylhistidine*)	0.47	[0.43-0.51] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73956845	73956846	rs12713794	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	TPRKB	rs12713794-A	0.376852	4E-120	(N-acetylasparagine)	0.543	[0.5-0.59] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73956845	73956846	rs12713794	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2p13.1	TPRKB	rs12713794-A	0.376852	3E-123	(N-acetylarginine)	0.548	[0.5-0.59] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73956845	73956846	rs12713794	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2p13.1	TPRKB	rs12713794-A	0.376852	3E-123	(N-acetylarginine)	0.548	[0.5-0.59] unit increase	Illumina [13039987] (imputed)	N
1149	chr2	73960380	73960381	rs2421556	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	2p13.1	TPRKB	rs2421556-T	0.65	4E-8		0.531	[0.34-0.72] unit decrease	Affymetrix [NR] (imputed)	N
1149	chr2	73966270	73966271	rs4514898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs4514898-T	NR	9E-13		0.0381	[0.028-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1149	chr2	73966270	73966271	rs4514898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs4514898-T	NR	8E-13		0.0383	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1149	chr2	74004042	74004043	rs77005800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2p13.1	DUSP11	rs77005800-T	0.9967	9E-6		0.5015	[0.28-0.72] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1149	chr2	74051611	74051612	rs10193032	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	DUSP11	rs10193032-?	NR	9E-13	(X-11787)	0.02051	[NR] unit decrease	Affymetrix [655658]	N
1150	chr2	74070185	74070186	rs7594485	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	STAMBP	rs7594485-?	NR	8E-29	(Nacetylornithine)	0.08869	[NR] unit decrease	Affymetrix [655658]	N
1150	chr2	74093651	74093652	rs3813230	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2p13.1	intergenic	rs3813230-?	NR	1E-17	(X-12510)	0.06451	[NR] unit decrease	Affymetrix [655658]	N
1150	chr2	74103185	74103186	rs744683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs744683-G	NR	1E-10		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1150	chr2	74103185	74103186	rs744683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2p13.1	NR	rs744683-G	NR	6E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1150	chr2	74104314	74104315	rs141807309	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2p13.1	STAMBP	rs141807309-C	0.0015	5E-6		2.99038	NR	Affymetrix, Illumina [30341632] (imputed)	N
1150	chr2	74109685	74109686	rs59974236	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p13.1		rs59974236-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1150	chr2	74126456	74126457	rs2249441	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	2p13.1	ACTG2	rs2249441-G	NR	5E-6		10.88	NR unit decrease	Illumina [up to 299604]	N
1150	chr2	74147720	74147721	rs831522	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	2p13.1	NR	rs831522-C	0.3618	8E-17		0.0227385	[0.017-0.028] unit increase	Affymetrix [3505788] (imputed)	N
1150	chr2	74166052	74166053	rs62641680	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	2p13.1	NR	rs62641680-A	0.00698882	5E-47		0.0903	[0.078-0.103] unit decrease	Affymetrix [23037915] (imputed)	N
1151	chr2	74187419	74187420	rs6546881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2p13.1	NR	rs6546881-T	0.657162	2E-10		0.012654	[0.0087-0.0166] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1151	chr2	74197994	74197995	rs72903399	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p13.1	NR	rs72903399-G	0.01568	2E-8	(FDXR)	0.02923	NR unit increase	Illumina [1671387] (imputed)	N
1151	chr2	74201039	74201040	rs10166809	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs10166809-T	NR	2E-6		0.213	[0.12-0.3] unit decrease	Illumina [NR] (imputed)	N
1151	chr2	74202577	74202578	rs4852324	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	2p13.1	NR	rs4852324-T	NR	5E-9				Illumina [NR] (imputed)	N
1151	chr2	74202577	74202578	rs4852324	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p13.1	DGUOK, TET3	rs4852324-T	0.76	6E-14		1.2658		Illumina [2100739] (imputed)	N
1151	chr2	74203040	74203041	rs35725652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.1		rs35725652-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1151	chr2	74208361	74208362	rs6705628	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2p13.1		rs6705628-T	NR	7E-9		0.88	[0.85-0.92]	NR [13810676] (imputed)	N
1151	chr2	74208361	74208362	rs6705628	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2p13.1	TET3	rs6705628-?	0.178	3E-8	(Chinese)	1.4	[NR]	NR [6344733] (imputed)	N
1151	chr2	74208361	74208362	rs6705628	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2p13.1	DGUOK, TET3	rs6705628-C	0.78	7E-17		1.3333		Illumina [2100739] (imputed)	N
1151	chr2	74216514	74216515	rs10207954	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2p13.1	TET3	rs10207954-A	0.823	2E-12		1.145	[1.11-1.18]	Illumina [11270530] (imputed)	N
1151	chr2	74238856	74238857	rs78876991	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2p13.1	TET3	rs78876991-T	0.9353	2E-7		0.0109	[0.0068-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
1151	chr2	74245776	74245777	rs6546886	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2p13.1	DGUOK, TET3	rs6546886-?	0.29	3E-6		2.13	[1.55-2.93]	Affymetrix [832357]	N
1151	chr2	74262090	74262091	rs12328927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p13.1		rs12328927-G	NR	4E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1151	chr2	74262352	74262353	rs11126424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.1	NR	rs11126424-C	0.277984	4E-11				Affymetrix, Illumina [19872809] (imputed)	N
1151	chr2	74262352	74262353	rs11126424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p13.1	NR	rs11126424-C	0.305557	2E-12		0.015598	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1151	chr2	74274811	74274812	rs72816199	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p13.1	NR	rs72816199-A	0.01045	2E-12	(SEPT11)	0.05049	NR unit decrease	Illumina [1671387] (imputed)	N
1151	chr2	74292747	74292747	rs150547831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p13.1	TET3	rs150547831-GTCCT	0.204403	9E-13		0.021194156	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1151	chr2	74292747	74292747	rs150547831	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p13.1	TET3	rs150547831-GTCCT	0.204413	1E-10		0.019073758	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1151	chr2	74317746	74317747	rs7584777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p13.1		rs7584777-?	NR	9E-13				NR [~ 8900000] (imputed)	N
1152	chr2	74334461	74334462	rs828867	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p13.1		rs828867-G	0.472	4E-15		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p13.1	BOLA3	rs828867-A	0.5418	4E-13		0.01873034	[0.014-0.024] unit increase	Affymetrix [~ 11515000] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2p13.1	TET3	rs828867-A	0.543	2E-9		0.0071	[0.0047-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p13.1	NR	rs828867-A	0.545	7E-12		0.00748218	[0.0053-0.0096] unit increase	NR [9732723] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2p13.1	NR	rs828867-A	0.545	8E-13		0.00957418	[0.007-0.0122] unit increase	NR [~ 9732723] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2p13.1	NR	rs828867-A	0.545	2E-9		0.008757157	[0.0059-0.0116] unit increase	NR [~ 10000000] (imputed)	N
1152	chr2	74334461	74334462	rs828867	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p13.1	Intergenic	rs828867-A	0.5454	4E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1152	chr2	74346403	74346404	rs6715731	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	2p13.1		rs6715731-?	NR	6E-7		0.037	[0.023-0.051] unit decrease	Affymetrix [9906178] (imputed)	N
1152	chr2	74346403	74346404	rs6715731	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	2p13.1		rs6715731-?	NR	5E-8		0.048	[0.03-0.066] unit decrease	Affymetrix [9906178] (imputed)	N
1152	chr2	74361289	74361290	rs4853012	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	2p13.1	BOLA3, MOB1A, TET3	rs4853012-A	0.141	2E-7		0.92	[NR] unit decrease	Illumina [15635593] (imputed)	N
1153	chr2	74463565	74463566	rs13006863	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	2p13.1	SLC4A5	rs13006863-?	NR	3E-6	(Whole cohort; AA)			Illumina [up to 871502]	N
1153	chr2	74463565	74463566	rs13006863	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2p13.1	SLC4A5	rs13006863-A		5E-7	(EA)			Illumina [NR]	N
1153	chr2	74516033	74516034	rs186278890	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p13.1	RP11-287D1.3	rs186278890-?	NR	6E-10	(AA)	0.3495754	[0.24-0.46] unit increase	Illumina [31978265] (imputed)	N
1153	chr2	74516033	74516034	rs186278890	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Triglyceride levels	9,980 African American individuals, 17,856 Hispanic/Latino individuals, 2,381 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 360 individuals	NA	2p13.1	RP11-287D1.3	rs186278890-?	NR	3E-10		0.32	[0.22-0.42] unit increase	Illumina [31978265] (imputed)	N
1154	chr2	74588604	74588605	rs11555696	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p13.1	SLC4A5, DCTN1, RTKN, M1AP	rs11555696-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
1154	chr2	74604406	74604407	rs72659369	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p13.1	RP11-287D1.3	rs72659369-G	0.00968499427365377	9E-6	(F_Sutterellaceae_HB)	1.67553	[0.94-2.42] unit decrease	Illumina [7711310] (imputed)	N
1154	chr2	74622388	74622389	rs146058206	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2p13.1	DCTN1	rs146058206-A		2E-6	(AA)	9.02	[1.31-62.00]	Affymetrix, Illumina [NR] (imputed)	N
1154	chr2	74651312	74651313	rs7607995	31729902	Penney KL	2019-11-15	J Urol	Genome-wide Association Study for Urinary and Fecal Incontinence in Women.	Stress urinary incontinence	1,809 European ancestry female cases, 4,811 European ancestry female controls	NA	2p13.1	WDR54	rs7607995-?	NR	5E-8	(adjusted for known risk factors)			Affymetrix, Illumina [1410640] (imputed)	N
1154	chr2	74681501	74681502	rs6746854	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p13.1	INO80B	rs6746854-T	0.8497	7E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1155	chr2	74721054	74721055	rs2301984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.1	NR	rs2301984-G	0.296634	1E-20				Affymetrix, Illumina [24588908] (imputed)	N
1155	chr2	74721054	74721055	rs2301984	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p13.1	NR	rs2301984-G	0.142579	7E-22		0.02527	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1155	chr2	74746321	74746322	rs6546909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p13.1		rs6546909-T	NR	5E-17		0.0221	[0.017-0.027] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1155	chr2	74746321	74746322	rs6546909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p13.1	DQX1	rs6546909-T	0.14745	1E-13		0.023476694	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1155	chr2	74746321	74746322	rs6546909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p13.1	DQX1	rs6546909-T	0.147457	1E-15		0.02534997	[0.019-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1155	chr2	74763804	74763805	rs139301764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.1		rs139301764-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1155	chr2	74781374	74781375	rs77436581	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p13.1	DOK1	rs77436581-?	NR	6E-14		0.10403795	[0.077-0.131] unit decrease	Illumina [27896057] (imputed)	N
1155	chr2	74781576	74781577	rs75192983	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2p13.1	DOK1	rs75192983-C	0.1296	5E-6		1.15073	NR	Affymetrix, Illumina [30341632] (imputed)	N
1156	chr2	74873380	74873381	rs6546917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p13.1		rs6546917-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1156	chr2	74920140	74920141	rs363656	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p13.1	NR	rs363656-?	NR	2E-8				Affymetrix [NR]	N
1156	chr2	74920647	74920648	rs183347927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p13.1		rs183347927-A	0.00221899999999997	3E-22		0.24573001	[0.2-0.3] unit increase	Affymetrix [93095623] (imputed)	N
1156	chr2	74920647	74920648	rs183347927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p13.1	NR	rs183347927-G	0.997793	5E-24				Affymetrix, Illumina [17210439] (imputed)	N
1156	chr2	74920647	74920648	rs183347927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p13.1	NR	rs183347927-G	0.997801	3E-26		0.239028	[0.19-0.28] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1156	chr2	74939175	74939176	rs1137	22685421	Fan Q	2012-06-07	PLoS Genet	Genetic variants on chromosome 1q41 influence ocular axial length and high myopia.	Myopia (pathological)	2,789 Chinese ancestry individuals, 2,155 Malay ancestry individuals	NA	2p13.1	SEMA4F	rs1137-C	0.16	4E-6		0.12	[0.061-0.179] mm increase	Illumina [456634]	N
1156	chr2	74972080	74972081	rs205611	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	2p13.1	AC007387.1	rs205611-A		1E-6	(Crypts)	0.12	[0.06-0.18] unit decrease	Illumina [274604] (imputed)	N
1157	chr2	75074966	75074967	rs681900	22087292	Sun L	2011-11-07	PLoS One	Bivariate genome-wide association analyses of femoral neck bone geometry and appendicular lean mass.	Femoral neck bone geometry	1,627 Han Chinese ancestry individuals	2,286 European ancestry individuals	2p12	HK2	rs681900-?	NR	3E-6	(ALM-BR)			Affymetrix [689368]	N
1158	chr2	75144935	75144936	rs150561220	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p12	intergenic	rs150561220-A	0.0078	9E-6		0.1813	[0.1-0.26] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1158	chr2	75182830	75182831	rs74965230	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	2p12	POLE4	rs74965230-C	NR	5E-10		9.354	[4.626-18.92]	Illumina [484621]	N
1159	chr2	75251360	75251361	rs2422088	30557370	Baas J	2018-12-17	PLoS One	Genome wide association study to identify predictors for severe skin toxicity in colorectal cancer patients treated with cetuximab.	Severe skin toxicity response to cetuximab in colorectal cancer	36 cases, 246 controls with no or mild skin toxicity	NA	2p12	Intergenic	rs2422088-?	NR	2E-6		5.882353	[0.075-0.41]	Illumina [5830976] (imputed)	N
1159	chr2	75276075	75276076	rs766494703	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2p12	TACR1	rs766494703-A	0.0014	3E-6		0.5988	[0.35-0.85] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1159	chr2	75358024	75358025	rs7602299	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	2p12	TACR1	rs7602299-C	0.6434	5E-6		0.2193	[0.13-0.31] unit increase	NR [NR] (imputed)	N
1160	chr2	75419713	75419714	rs3771863	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		2p12	TACR1	rs3771863-?	NR	3E-9	(Strength - L-inferior parietal)			Illumina [428287]	N
1160	chr2	75445543	75445544	rs12464387	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p12	TACR1, EVA1A	rs12464387-G	0.5362	1E-9		1.0216306		Affymetrix [11880941] (imputed)	N
1160	chr2	75459667	75459668	rs765684	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	2p12	TACR1	rs765684-G		9E-7	(WHR, men)			Affymetrix, Illumina [2846694] (imputed)	N
1160	chr2	75473915	75473916	rs7588010	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2p12	TACR1, FAM176A	rs7588010-A	0.357	4E-9		2.72	[1.93-3.84]	Illumina [1556551]	N
1162	chr2	75638866	75638867	rs79215632	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2p12	snoU13	rs79215632-T	0.0222	5E-6		0.1628	[0.093-0.233] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1162	chr2	75658779	75658780	rs6546997	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	2p12	TACR1, EVA1A	rs6546997-?	NR	1E-7				Illumina [9008729] (imputed)	N
1162	chr2	75697423	75697424	rs10460510	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	2p12	NR	rs10460510-?	NR	2E-10			[NR]	NR [1665663]	N
1162	chr2	75714590	75714591	rs6717602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p12		rs6717602-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1162	chr2	75714590	75714591	rs6717602	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p12		rs6717602-?	NR	3E-13		0.015442	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1162	chr2	75716306	75716307	rs10167307	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	2p12	TACR1, EVA1A	rs10167307-G	0.376	9E-7		1.2	[1.12-1.30]	Illumina [7206774] (imputed)	N
1162	chr2	75720371	75720372	rs11126472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p12		rs11126472-T	NR	7E-13		0.0382	[0.028-0.049] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1162	chr2	75720371	75720372	rs11126472	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2p12	NR	rs11126472-?	NR	5E-6		0.475846	[0.27-0.68] unit decrease	Affymetrix [656292] (imputed)	N
1162	chr2	75751874	75751875	rs11694469	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2p12		rs11694469-?	NR	3E-6		1.0643337	[1.03688924019737-1.09250453661663]	Illumina [up to 7827597] (imputed)	N
1163	chr2	75761947	75761948	rs114437475	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p12	NR	rs114437475-?	NR	6E-10				Illumina [7760689] (imputed)	N
1163	chr2	75761947	75761948	rs114437475	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p12	NR	rs114437475-?	NR	3E-8				Illumina [7760689] (imputed)	N
1163	chr2	75790488	75790489	rs17011455	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	2p12	FAM176A	rs17011455-?	0.01661	5E-6	(LAC)	5.211	[NR]	Affymetrix [906600]	N
1163	chr2	75792142	75792143	rs17011478	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2p12	FAM176A	rs17011478-A	0.176	6E-6	(Head circumference )	0.04	[NR] cm increase	Illumina [899892]	N
1163	chr2	75869827	75869828	rs12105510	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	2p12	intergenic	rs12105510-?		6E-6				NR [~ 3000000] (imputed)	N
1163	chr2	75877649	75877650	rs1990145	29739359	Graham PS	2018-05-08	BMC Med Genet	Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy.	Diabetic macular edema in type 2 diabetes	270 European ancestry cases, 435 European ancestry controls	NA		MRPL19	rs1990145-A	0.268	4E-6		2.02	[1.50-2.72]	Illumina [617130]	N
1164	chr2	75926564	75926565	rs2298948	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2p12	GCFC2	rs2298948-C	0.29	5E-8	(Hippocampal volume)			Illumina [2131250] (imputed)	N
1165	chr2	76112862	76112863	rs12612334	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (post-diagnosis)	130 European ancestry cases, 1,180 European ancestry controls	NA	2p12	GCFC2	rs12612334-C	NR	3E-6		1.91	NR	Illumina [602644]	N
1166	chr2	76184815	76184816	rs2583526	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	2p12	NR	rs2583526-?		1E-6				Illumina [1211988] (imputed)	N
1166	chr2	76204988	76204989	rs12471016	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	2p12	C2orf3	rs12471016-T	0.086	4E-6		0.25	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1166	chr2	76240360	76240361	rs436000	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	2p12	intergenic	rs436000-T	NR	8E-7		0.125	[0.076-0.174] unit increase	Illumina [628922]	N
1166	chr2	76251130	76251131	rs72907431	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2p12	NR	rs72907431-?		7E-6				Illumina [4322238] (imputed)	N
1166	chr2	76260715	76260716	rs72820790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p12	NR	rs72820790-?	NR	5E-8		0.0094152	[0.006-0.0128] unit increase	Affymetrix [805426] (imputed)	N
1167	chr2	76297342	76297343	rs115487049	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2p12		rs115487049-A	NR	5E-8		1.07		Illumina [NR] (imputed)	N
1167	chr2	76307344	76307345	rs406952	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p12	NR	rs406952-C	0.3765	1E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1167	chr2	76346384	76346385	rs6744983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p12		rs6744983-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1167	chr2	76361782	76361783	rs6727752	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p12	GCFC2, LRRTM4	rs6727752-A	0.3569	2E-10		1.0259305		Affymetrix [11880941] (imputed)	N
1167	chr2	76375710	76375711	rs10204325	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	2p12	intergenic	rs10204325-T	NR	1E-7		0.134	[0.085-0.183] unit increase	Illumina [628922]	N
1167	chr2	76383588	76383589	rs13027159	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p12	SUCLA2P2	rs13027159-?	NR	6E-9		0.010097	[0.0067-0.0135] unit decrease	Affymetrix [805426] (imputed)	N
1168	chr2	76417352	76417353	rs10209663	31936517	Cox JW	2020-01-09	J Clin Med	Genome-Wide Association Study of Opioid Cessation.	Opioid use cessation	1,130 African American individuals, 2,919 European ancestry individuals	NA	2p12	SUCLA2P2, AC073091.2	rs10209663-?	0.91	3E-6		1.4084507	[NR]	Illumina [NR] (imputed)	N
1168	chr2	76419465	76419466	rs11687064	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	2p12	Intergenic	rs11687064-G	0.08124	3E-7		0.3049	unit increase	Illumina [519442]	N
1168	chr2	76419532	76419533	rs180860904	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p12	AC073091.2	rs180860904-T	0.0028	1E-6		0.7274	[0.43-1.02] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1168	chr2	76455167	76455168	rs13027106	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p12	NR	rs13027106-C	NR	3E-7		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1168	chr2	76459529	76459530	rs35066740	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2p12		rs35066740-?	NR	3E-9				NR [7857346] (imputed)	N
1168	chr2	76459529	76459530	rs35066740	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p12	ENSG00000228209	rs35066740-?	NR	4E-9		0.010193	[0.0068-0.0136] unit increase	Affymetrix [805426] (imputed)	N
1168	chr2	76461201	76461202	rs2901756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p12		rs2901756-A	NR	4E-8		0.0172	[0.011-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1168	chr2	76465287	76465288	rs35430959	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p12	LOC647275	rs35430959-C	NR	2E-7	(EA)	1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
1168	chr2	76465287	76465288	rs35430959	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p12	LOC647275	rs35430959-C	NR	1E-7		1.0706638	[1.04-1.1]	Illumina [6627481] (imputed)	N
1168	chr2	76465287	76465288	rs35430959	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p12	intergenic	rs35430959-C	NR	6E-8		1.0729614	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1168	chr2	76486805	76486806	rs10865419	28078323	Raj T	2016-12-21	Neurol Genet	Genetic architecture of age-related cognitive decline in African Americans.	Cognitive decline (age-related)	3,964 African American ancestry individuals.	NA	2p12	C2orf3, LRRTM4	rs10865419-?		3E-6		0.007	unit decrease	Illumina [13900000] (imputed)	N
1169	chr2	76583235	76583236	rs7420310	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom remission)	2,145 European ancestry individuals	NA	2p12	NR	rs7420310-?	NR	4E-6		1.4220706	NR	Affymetrix, Illumina [7062950] (imputed)	N
1169	chr2	76618104	76618105	rs7558445	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	MRPL19	rs7558445-?	NR	7E-6	(pyruvate)	0.2978513	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1169	chr2	76624219	76624220	rs17575455	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	2p12	NR	rs17575455-A	0.3073	6E-6		0.0095	[0.0054-0.0136] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1169	chr2	76637335	76637336	rs6547085	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	2p12		rs6547085-G	0.0532	2E-6		4.752	z score increase	Illumina [7275796] (imputed)	N
1169	chr2	76673578	76673579	rs10164734	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	MRPL19	rs10164734-?	NR	3E-6	(TAG 56:4)	1.4045798	[0.82-1.99] unit increase	Affymetrix [at least 2500000] (imputed)	N
1170	chr2	76759574	76759575	rs74529274	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2p12	intergenic	rs74529274-?	NR	9E-6	(SF8)			Affymetrix [5476100] (imputed)	N
1170	chr2	76762756	76762757	rs17012903	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	MRPL19	rs17012903-?	NR	2E-6	(TAG 48:3)	0.20568995	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1170	chr2	76762756	76762757	rs17012903	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	MRPL19	rs17012903-?	NR	1E-6	(TAG 50:4)	0.21296449	[0.13-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1171	chr2	76808644	76808645	rs12473223	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	MRPL19	rs12473223-?	NR	3E-6	(TAG 50:3)	0.28422326	[0.17-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1171	chr2	76812264	76812265	rs12477639	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2p12	NR	rs12477639-?	NR	8E-6		3.57	[2.79-4.58]	Illumina [539000] (imputed)	N
1172	chr2	77016348	77016349	rs12988164	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (stiff neck)	937 Japanese ancestry female cases, 4,797 Japanese ancestry female controls	944 Japanese ancestry female cases, 4,670 Japanese ancestry female controls	2p12	NR	rs12988164-G	0.442518934	7E-6		0.16096936	[0.091-0.231] unit increase	Affymetrix [536506]	N
1173	chr2	77088597	77088598	rs13389599	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2p12	NR	rs13389599-?	NR	8E-11	(AA)	22.26	[19.5-25.02]	Illumina [905956]	N
1173	chr2	77095940	77095941	rs114086183	34684344	Zhang Z	2021-09-24	Nutrients	Vitamin D and the Risks of Depression and Anxiety: An Observational Analysis and Genome-Wide Environment Interaction Study.	Depression x vitamin D PRS interaction (COJO adjusted)	58,349 European ancestry cases, 63,336 European ancestry controls	NA	2p12		rs114086183-?	NR	4E-8		0.16	[0.1-0.22] unit increase	Affymetrix [NR] (imputed)	N
1173	chr2	77108312	77108313	rs1929447	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p12	LRRTM4	rs1929447-A	0.569	6E-19		1.0317		Affymetrix [11880941] (imputed)	N
1173	chr2	77113159	77113160	rs6743766	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2p12	LRRTM4	rs6743766-A	0.2062	7E-9		0.018468957	[0.012-0.025] unit increase	Affymetrix [~ 11515000] (imputed)	N
1173	chr2	77156401	77156402	rs4853283	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p12	NR	rs4853283-G	0.4401	2E-16		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
1174	chr2	77215496	77215497	rs13388459	31362389	Chen YC	2019-07-29	J Clin Med	LRRTM4 and PCSK5 Genetic Polymorphisms as Markers for Cognitive Impairment in A Hypotensive Aging Population: A Genome-Wide Association Study in Taiwan.	Hypotension and cognitive impairment	56 Han Chinese ancestry cases, 1,799 Han Chinese ancestry controls	NA	2p12	LRRTM4	rs13388459-T	0.14	6E-6		2.85	[1.81-4.49]	NR [590244]	N
1174	chr2	77217309	77217310	rs10520176	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2p12	LRRTM4	rs10520176-T	0.4926	5E-24		1.0358		Affymetrix [11880941] (imputed)	N
1174	chr2	77217309	77217310	rs10520176	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p12	LRRTM4	rs10520176-T	0.4926	5E-24		1.0384196		Affymetrix [11880941] (imputed)	N
1174	chr2	77217309	77217310	rs10520176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2p12		rs10520176-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1174	chr2	77223937	77223938	rs1470506	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p12	NR	rs1470506-C	0.595063458147818	4E-7	(IGP65)	0.16	[0.098-0.222] unit increase	Illumina [~ 2500000] (imputed)	N
1174	chr2	77223937	77223938	rs1470506	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p12	NR	rs1470506-C	0.594972305394561	6E-6	(IGP61)	0.1425	[0.081-0.204] unit increase	Illumina [~ 2500000] (imputed)	N
1174	chr2	77224929	77224930	rs62171962	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	2p12	LRRTM4	rs62171962-?	NR	8E-10		0.00375157	[-0.00186-0.00936] unit decrease	Affymetrix [25921788] (imputed)	N
1174	chr2	77224929	77224930	rs62171962	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	2p12	LRRTM4	rs62171962-?	NR	8E-10		0.0174966	[0.012-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
1174	chr2	77225360	77225361	rs12713889	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2p12	LRRTM4	rs12713889-T	0.670052	4E-15		0.0116905	[0.0088-0.0146] unit increase	Affymetrix [12370749]	N
1174	chr2	77246330	77246331	rs6547115	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p12	NR	rs6547115-G	0.391438525144637	8E-6	(IGP76)	0.1432	[0.08-0.206] unit decrease	Illumina [~ 2500000] (imputed)	N
1174	chr2	77292599	77292600	rs72807203	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p12	LRRTM4	rs72807203-T	0.166	7E-10		0.019589901	[0.013-0.026] unit increase	Affymetrix [11515109] (imputed)	N
1174	chr2	77299126	77299127	rs143985312	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	2p12	LRRTM4, SUCLA2P2, TRNAP25P	rs143985312-C	0.02	7E-8		1.14	[0.73-1.55] unit increase	Illumina [7797256] (imputed)	N
1174	chr2	77305159	77305160	rs7586062	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p12		rs7586062-C	0.4717	3E-24		0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1175	chr2	77334006	77334007	rs6750737	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p12		rs6750737-G	0.75	9E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1175	chr2	77404111	77404112	rs1837425	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	C2orf3	rs1837425-?	NR	5E-7	(isocitrate)	0.71675086	[0.44-1] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1175	chr2	77409474	77409475	rs57577079	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2p12	LRRTM4	rs57577079-G	0.0887040494218709	8E-6	(G_Sporobacter_HB)	0.523128	[0.29-0.75] unit decrease	Illumina [7711310] (imputed)	N
1175	chr2	77437278	77437279	rs10171377	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	2p12	LRRTM4	rs10171377-G	0.31184999999999996	8E-6		1.13	[0.63-1.63] unit decrease	Affymetrix [NR] (imputed)	N
1176	chr2	77478550	77478551	rs144042126	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p12	NR	rs144042126-?	NR	3E-8				Illumina [7760689] (imputed)	N
1176	chr2	77538128	77538129	rs10208323	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	2p12	NR	rs10208323-?	NR	3E-6		0.2079	[0.12-0.29] unit increase	Illumina [at least 560000] (imputed)	N
1176	chr2	77555905	77555906	rs13025652	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	2p12	LRRTM4, C2orf3	rs13025652-C	0.66	5E-6	(DWRT-dr)	0.0913	[0.052-0.131] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1177	chr2	77618400	77618401	rs9309515	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2p12	NR	rs9309515-T	0.0931	4E-6		0.0394	[0.023-0.056] unit decrease	Illumina [up to 1980188] (imputed)	N
1177	chr2	77661104	77661105	rs17751180	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	2p12	LRRTM4	rs17751180-G	0.2694	1E-6	(FVC)	0.2842	NR unit decrease	Affymetrix [305158]	N
1177	chr2	77687100	77687101	rs1922809	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	2p12	LRRTM4	rs1922809-?	NR	8E-7				Affymetrix, Illumina [at least 3287443] (imputed)	N
1177	chr2	77704888	77704889	rs61712019	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p12	LRRTM4	rs61712019-T	NR	1E-7		1.062	[1.04-1.08]	Illumina [6627481] (imputed)	N
1177	chr2	77704888	77704889	rs61712019	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2p12	LRRTM4	rs61712019-T	NR	1E-6	(EA)	1.0612	[1.04-1.09]	Illumina [6627481] (imputed)	N
1177	chr2	77704888	77704889	rs61712019	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2p12	intergenic	rs61712019-T	NR	1E-6		1.056	[1.03-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1177	chr2	77704888	77704889	rs61712019	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p12	NR	rs61712019-T	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1177	chr2	77724623	77724624	rs11679943	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2p12	NR	rs11679943-A	0.3471	3E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1178	chr2	77780796	77780797	rs6729048	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	2p12	LRRTM4	rs6729048-A	0.137328	3E-7	(women)	0.368718	[0.23-0.51] mm2 decrease	Affymetrix [532676] (imputed)	N
1178	chr2	77780796	77780797	rs6729048	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	2p12	LRRTM4	rs6729048-A	0.137328	3E-6	(women)	0.259171	[0.15-0.37] mm2 decrease	Affymetrix [532676] (imputed)	N
1178	chr2	77780866	77780869	rs56203676	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lip morphology	2,447 European ancestry individuals	671 European ancestry individuals	2p12	intergenic	rs56203676-CAAA	0.4132	8E-8	(Labial fissure width)	0.4608	[0.26-0.66] unit decrease	Illumina [34985077] (imputed)	N
1178	chr2	77830036	77830037	rs114423558	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	2p12		rs114423558-A	0.983538	5E-6		0.0354739	[0.02-0.051] unit decrease	Illumina [13900000] (imputed)	N
1179	chr2	77882019	77882020	rs75018958	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p12	TRNAP25P	rs75018958-G	0.083	2E-6		1.818	[1.42-2.328]	Affymetrix, Illumina [14074516] (imputed)	N
1179	chr2	77886506	77886507	rs4254526	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p12	LRRTM4	rs4254526-T	0.3706	5E-11		0.0115233	[0.0081-0.015] unit decrease	Affymetrix [11880941] (imputed)	N
1179	chr2	77916761	77916762	rs10190053	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2p12		rs10190053-A	0.3695	7E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1179	chr2	77926801	77926801	rs137957525	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		2p12	intergenic	rs137957525-TTG	0.242	9E-6		0.474	[0.27-0.68] unit decrease	Illumina [640625] (imputed)	N
1179	chr2	77928313	77928314	rs7598757	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs7598757-G	0.257	5E-8		0.00671623	[0.0043-0.0091] unit decrease	NR [9732723] (imputed)	N
1179	chr2	77939512	77939513	rs1809591	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	2p12	NR	rs1809591-?	NR	2E-6		1.1678296	[1.10-1.25]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1179	chr2	77942843	77942844	rs11126630	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	2p12	LRRTM4	rs11126630-T	0.52	6E-7				Affymetrix, Illumina [up to 3856236] (imputed)	N
1179	chr2	77942843	77942844	rs11126630	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	2p12	SNAR-H, LRRTM4	rs11126630-T	0.49	5E-8		0.03	[0.010-0.050] unit decrease	Affymetrix, Illumina [up to 3856236] (imputed)	N
1179	chr2	77986914	77986915	rs74261103	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p12	LOC101927967	rs74261103-G	0.1196	3E-7	(EA)			Illumina [4404269] (imputed)	N
1180	chr2	77992268	77992269	rs12617011	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2p12	LOC101927967	rs12617011-T	0.1326	3E-7				Illumina [4404269] (imputed)	N
1180	chr2	78018163	78018164	rs11688027	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2p12	LOC101927967	rs11688027-A	0.926563	1E-8		0.0223506	[0.015-0.03] unit decrease	NR [16516521] (imputed)	N
1180	chr2	78028837	78028838	rs12621150	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2p12	Intergenic	rs12621150-T	0.9	8E-6	(EA)			Illumina [NR] (imputed)	N
1180	chr2	78059063	78059064	rs59436237	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	2p12	NR	rs59436237-T	0.198	7E-7		0.1859	[0.11-0.26] unit decrease	Illumina [10677593] (imputed)	N
1180	chr2	78075243	78075244	rs7595103	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2p12	intergenic	rs7595103-A	0.64	7E-6				Perlegen [378332]	N
1180	chr2	78104289	78104290	rs55972894	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p12	NR	rs55972894-T	0.346	4E-6	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
1180	chr2	78108916	78108917	rs10202675	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2p12	LRRTM4	rs10202675-T	NR	4E-8	(right endocanthion-right alare distance)	0.258	NR unit decrease	Illumina [7029494] (imputed)	N
1180	chr2	78108991	78108992	rs184205168	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	2p12	LRRTM4	rs184205168-T	NR	5E-6	(women)	0.301	[0.17-0.43] unit decrease	Illumina [5527232] (imputed)	N
1181	chr2	78122256	78122257	rs59600812	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2p12	NR	rs59600812-T	0.8921	1E-6		1.5133	[0.91-2.12] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1181	chr2	78122256	78122257	rs59600812	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	2p12	NR	rs59600812-T	0.8862	5E-7		1.6033	[0.98-2.23] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1181	chr2	78158333	78158334	rs191269447	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2p12	SNAR-H	rs191269447-A	0.0307	7E-6		2.435	[1.652-3.588]	Affymetrix, Illumina [14074516] (imputed)	N
1181	chr2	78177487	78177488	rs62164740	33898419	Mukhopadhyay N	2021-04-09	Front Cell Dev Biol	Genome-Wide Association Study of Non-syndromic Orofacial Clefts in a Multiethnic Sample of Families and Controls Identifies Novel Regions.	Nonsyndromic cleft lip with or without cleft palate	154 African ancestry cases, 274 African ancestry controls, 445 Asian ancestry cases, 1,246 Asian ancestry controls, 569 European ancestry cases, 2,704 European ancestry controls, 1,050 Central and South American cases, 2,988 Central and South American controls, 3 cases, 14 controls	NA	2p12	NR	rs62164740-A		6E-7		0.25	[0.13-0.37] unit increase	Illumina [NR] (imputed)	N
1182	chr2	78273096	78273097	rs4853365	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Cerebral amyloid angiopathy	404 European ancestry mild cases, 209 European ancestry moderate cases, 113 European ancestry severe cases, 183 European ancestry controls	369 individuals	2p12		rs4853365-G	0.6	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1182	chr2	78296073	78296074	rs17014922	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2p12	NR	rs17014922-T	0.771027	6E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1182	chr2	78328522	78328523	rs7593589	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	2p12	NR	rs7593589-A	NR	3E-6		3.3	[NR]	Illumina [NR] (imputed)	N
1183	chr2	78478132	78478133	rs1589933	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p12	AC012494.1	rs1589933-A	0.9832	9E-7		0.145	[0.087-0.203] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1184	chr2	78539665	78539666	rs2037723	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1/FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	2p12	NR	rs2037723-?		3E-6	(AA)			Illumina [up to 524000]	N
1184	chr2	78613673	78613674	rs72822868	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	2p12	SNAR-H	rs72822868-T	NR	5E-7	(Cases)	0.23	[0.14-0.32] unit increase	Illumina [6900000] (imputed)	N
1185	chr2	78773135	78773136	rs11904541	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2p12	Intergenic	rs11904541-A	0.617	3E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1186	chr2	78790135	78790136	rs72810657	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p12		rs72810657-G	0.689	1E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1186	chr2	78790135	78790136	rs72810657	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs72810657-A	0.308	5E-8		0.00638451	[0.0041-0.0087] unit increase	NR [9732723] (imputed)	N
1186	chr2	78860083	78860084	rs1401735	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	2p12	REG3G	rs1401735-T	0.011	3E-8	(EA)	1.773	[1.15-2.4] unit increase	Affymetrix, Illumina [~ 39000000] (imputed)	N
1187	chr2	78966939	78966940	rs11695335	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2p12	LOC105374820, REG3G	rs11695335-T	0.1842	5E-6		0.158	[0.09-0.226] unit decrease	NR [NR] (imputed)	N
1188	chr2	79077138	79077139	rs61296728	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	2p12	REG3G	rs61296728-T	0.7361	2E-8	(SM d16:1/18:0)	0.0964	[0.062-0.131] unit decrease	Illumina [~ 47000000] (imputed)	N
1189	chr2	79198167	79198168	rs11683503	24152035	Goodbourn PT	2013-10-23	Genes Brain Behav	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	NA	2p12	REG1A, CTNNA2, REG3G, REG1B	rs11683503-?	0.079	1E-7		4.41	[NR] unit increase	Illumina [642758]	N
1189	chr2	79218463	79218464	rs10204507	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	2p12		rs10204507-C	0.947	4E-6		0.129	[0.074-0.184] unit increase	Affymetrix [6030650] (imputed)	N
1189	chr2	79242903	79242904	rs439914	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG3G	5,366 Icelandic ancestry individuals	NA	2p12		rs439914-A	0.2117	1E-117		0.495719	[0.45-0.54] unit increase	Illumina [7506463] (imputed)	N
1189	chr2	79244585	79244586	rs429694	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p12	REG3G	rs429694-A	0.79359375	9E-63	(REG3G, 9352_86_3)	0.48680186	[0.43-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
1189	chr2	79254441	79254442	rs17016222	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG3G	5,366 Icelandic ancestry individuals	NA	2p12		rs17016222-T	0.1532	6E-53		0.386804	[0.34-0.44] unit decrease	Illumina [7506463] (imputed)	N
1189	chr2	79298363	79298364	rs1448213	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p12	REG1A	rs1448213-A	0.58796875	2E-17	(REG1A, 13095_51_3)	0.21968745	[0.17-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1190	chr2	79299276	79299277	rs17753345	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG1A	5,350 Icelandic ancestry individuals	NA	2p12		rs17753345-A	0.1116	2E-16		0.227728	[0.17-0.28] unit decrease	Illumina [7506463] (imputed)	N
1190	chr2	79313055	79313056	rs1522855	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG3G	5,366 Icelandic ancestry individuals	NA	2p12		rs1522855-C	0.2772	1E-86		0.400444	[0.36-0.44] unit increase	Illumina [7506463] (imputed)	N
1190	chr2	79327221	79327222	rs205549	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	2p12		rs205549-C	NR	4E-6		1.3155	[0.77-1.86] unit increase	Illumina [NR] (imputed)	N
1190	chr2	79330168	79330169	rs76841471	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein REG1A	5,350 Icelandic ancestry individuals	NA	2p12		rs76841471-G	0.06542	3E-25		0.370919	[0.3-0.44] unit increase	Illumina [7506463] (imputed)	N
1190	chr2	79338771	79338772	rs140798366	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	2p12	REG1A	rs140798366-A	0.022	9E-6		7.25	[3.03-17.38]	Illumina [7759885] (imputed)	N
1190	chr2	79348195	79348196	rs2070707	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	2p12	NR	rs2070707-T		2E-6		0.2518	[0.15-0.36] unit increase	Illumina [12764477] (imputed)	N
1190	chr2	79404925	79404926	rs17016433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p12		rs17016433-A	NR	2E-8		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1190	chr2	79425457	79425458	rs17016534	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	REG1A	rs17016534-?	NR	5E-6	(cystathionine)	0.36163652	[0.21-0.52] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1190	chr2	79425697	79425698	rs755741156	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2p12		rs755741156-C	NR	4E-8		0.8831	[0.57-1.2] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1191	chr2	79481108	79481109	rs1434206	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs1434206-G	0.609	2E-9		0.00661382	[0.0044-0.0088] unit increase	NR [9732723] (imputed)	N
1191	chr2	79482642	79482643	rs934515	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p12	NA	rs934515-A	0.1175	7E-12		0.0181	[0.013-0.023] unit increase	NR [~ 27400000] (imputed)	N
1191	chr2	79483598	79483601	rs141581794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p12		rs141581794-A	NR	2E-8		0.0147	[0.0096-0.0198] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1191	chr2	79489922	79489923	rs17705745	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	2p12	REG3A, LOC101927987	rs17705745-?		5E-6	(African American)	0.1226016	[0.07-0.175] unit decrease	Illumina [13620258] (imputed)	N
1191	chr2	79496557	79496558	rs1897784	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p12		rs1897784-C	0.399	5E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1191	chr2	79497778	79497779	rs17016673	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2p12	NR	rs17016673-C	NR	5E-10		0.028	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1191	chr2	79497778	79497779	rs17016673	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2p12	REG3G, REG1P, REG1B, REG1A, CTNNA2, MIR4264	rs17016673-C	0.890830849050658	4E-8		0.026278669	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1191	chr2	79506642	79506643	rs4566392	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p12	REG3A	rs4566392-A	0.107	7E-6	(EA, women)	0.037	[0.021-0.052] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1191	chr2	79506642	79506643	rs4566392	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p12	REG3A	rs4566392-A	0.107	6E-6		0.029	[0.016-0.041] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1191	chr2	79506642	79506643	rs4566392	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p12	REG3A	rs4566392-A	0.107	5E-6	(EA)	0.029	[0.017-0.042] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1191	chr2	79532495	79532495	rs143608398	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CTNNA2	rs143608398-?	NR	8E-9	(male)	1.4571	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1191	chr2	79539987	79539988	rs13409348	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	2p12	CTNNA2	rs13409348-G	0.24	3E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [2366197] (imputed)	N
1192	chr2	79575186	79575187	rs726236	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	2p12	CTNNA2	rs726236-G	0.36	8E-6		0.0374	[0.021-0.054] unit decrease	Illumina [6380737] (imputed)	N
1192	chr2	79599060	79599061	rs6547231	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CTNNA2	rs6547231-?	NR	2E-8		0.04	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1192	chr2	79624987	79624988	rs4852146	25411281	Dashti HS	2014-10-08	Am J Clin Nutr	Meta-analysis of genome-wide association studies for circulating phylloquinone concentrations.	Circulating phylloquinone levels	2,138 European ancestry individuals	NA	2p12	CTNAA2	rs4852146-C	0.33	1E-7	(Model 2)	0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [2543887] (imputed)	N
1192	chr2	79632346	79632347	rs2100290	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol consumption	7,188 European ancestry individuals	NA	2p12	NR	rs2100290-G	0.49	2E-6		3.443	[NR] unit decrease	Illumina [527829]	N
1192	chr2	79658437	79658438	rs76345422	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	2p12	intergenic	rs76345422-T	NR	9E-7		3.38794	[1.3-5.47] unit increase	Illumina [7433384] (imputed)	N
1192	chr2	79676304	79676305	rs442291	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	2p12	CTNNA2	rs442291-?	NR	1E-8		0.014242	[0.0093-0.0191] unit decrease	Affymetrix [25921788] (imputed)	N
1192	chr2	79687251	79687252	rs399885	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p12	intergenic	rs399885-?	0.327	5E-7	(clozapine-heart rate)			Affymetrix [492900]	N
1193	chr2	79692921	79692921	rs71245368	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2p12	NR	rs71245368-?	NR	5E-6		0.0686	[0.039-0.098] unit increase	Illumina [at least 560000] (imputed)	N
1193	chr2	79703383	79703384	rs6717316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2p12		rs6717316-G	0.329952	1E-8		0.0240496	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1193	chr2	79703383	79703384	rs6717316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	2p12		rs6717316-G	0.329952	3E-8		0.023185	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1193	chr2	79709353	79709354	rs7570469	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	2p12	CTNNA2	rs7570469-?	NR	1E-8		0.0147838	[0.0097-0.0199] unit increase	Affymetrix [25921788] (imputed)	N
1193	chr2	79709353	79709354	rs7570469	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p12	intergenic	rs7570469-?	0.418	6E-7	(clozapine-heart rate)			Affymetrix [492900]	N
1193	chr2	79710524	79710525	rs4458235	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2p12	CTNNA2	rs4458235-?	NR	4E-10		0.0161001	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1194	chr2	79864922	79864923	rs13400937	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	2p12	NR	rs13400937-T	0.71	3E-6		0.21	[0.12-0.3] unit decrease	Illumina [5418572] (imputed)	N
1194	chr2	79918453	79918454	rs6547257	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2p12	CTNNA2	rs6547257-?		3E-12				Affymetrix, Illumina [NR] (imputed)	N
1194	chr2	79922801	79922802	rs11695685	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p12	CTNNA2	rs11695685-?	0.30	5E-7	(IL10)			Illumina [496032]	N
1194	chr2	79944107	79944108	rs13025833	25824743	Haryono SJ	2015-01-01	Asian Pac J Cancer Prev	A pilot genome-wide association study of breast cancer susceptibility loci in Indonesia.	Breast cancer	89 Indonesian ancestry cases, 46 Indonesian ancestry controls	NA	2p12	CTNNA2	rs13025833-A	0.52	1E-7		1.2	[1.13-1.33]	Affymetrix [292887]	N
1195	chr2	79956549	79956550	rs1567532	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	2p12	CTNNA2	rs1567532-T	NR	4E-6		1.38	[1.20-1.58]	NR [7738399] (imputed)	N
1195	chr2	79968157	79968158	rs11681484	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	2p12	NR	rs11681484-?	NR	3E-6		0.763	[0.47-1.05] unit increase	Affymetrix [7154205] (imputed)	N
1195	chr2	79978359	79978360	rs10196867	31462767	Sun Y	2019-08-28	Mol Psychiatry	Identification of novel risk loci with shared effects on alcoholism, heroin, and methamphetamine dependence.	Alcohol dependence or heroin dependence or methamphetamine dependence	521 Han Chinese ancestry alcohol dependence cases, 1,026 Han Chinese ancestry heroin dependence cases, 1,749 Han Chinese ancestry methamphetamine dependence cases, 2,859 Han Chinese ancestry controls	146 Han Chinese ancestry alcohol dependence cases, 1,045 Han Chinese ancestry heroin dependence cases, 763 Han Chinese ancestry methamphetamine dependence cases, 1,904 Han Chinese ancestry controls	2p12	CTNNA2	rs10196867-C	0.0297	5E-9		0.243	[0.16-0.33] unit increase	Illumina [383065] (imputed)	N
1195	chr2	80079710	80079711	rs140089781	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	2p12	CTNNA2	rs140089781-A	0.001	4E-8	(men)	0.024	[0.016-0.032] unit decrease	Affymetrix [12489781] (imputed)	N
1196	chr2	80088030	80088031	rs138779662	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2p12		rs138779662-C	0.986676	8E-6		0.0555136	[0.032-0.079] unit decrease	Illumina [13900000] (imputed)	N
1196	chr2	80117279	80117280	rs989743	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	LRRTM1	rs989743-?	NR	4E-6	(cotinine)	0.20716137	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1196	chr2	80119493	80119494	rs13034462	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	2p12	CTNNA2	rs13034462-?	NR	7E-6		0.0603	[0.034-0.087] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1196	chr2	80119551	80119552	rs1368908	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	2p12	CTNNA2	rs1368908-A	0.24	5E-6		2.21		Illumina [983392]	N
1196	chr2	80121188	80121189	rs12998155	26911590	Mullin BH	2016-02-25	BMC Genomics	Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density.	Bone mineral density (femoral neck)	1,042 Northern European ancestry individuals	5,654 Northern European ancestry individuals	2p12	CTNNA2	rs12998155-C	0.45	5E-8		0.13	[0.091-0.169] g/cm2 decrease	Illumina [NR] (imputed)	N
1196	chr2	80154235	80154236	rs17018138	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	2p12	CTNNA2	rs17018138-G	0.05	8E-6		0.0588	NR unit increase	NR [NR] (imputed)	N
1196	chr2	80187968	80187969	rs6752828	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2p12	CTNNA2	rs6752828-C	0.461	3E-7	(EA, men)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1196	chr2	80192351	80192352	rs2916490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs2916490-A	0.3023	2E-9		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1196	chr2	80192351	80192352	rs2916490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p12	Intergenic	rs2916490-A	0.3023	1E-10	(MTAG)	0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1196	chr2	80192351	80192352	rs2916490	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p12	Intergenic	rs2916490-A	0.3012	3E-8	(MTAG)	0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1196	chr2	80192351	80192352	rs2916490	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	NR	rs2916490-?	NR	5E-7		5.014	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1197	chr2	80216175	80216176	rs17018359	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Schizophrenia (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	2p12	CTNNA2	rs17018359-?	NR	2E-6	(MTAG including spine BMD data)	0.102	unit decrease	Affymetrix [NR]	N
1197	chr2	80221897	80221898	rs10180106	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	2p12	CTNNA2	rs10180106-A	NR	2E-6		4.719	z score increase	Affymetrix, Illumina [up to 1994688]	N
1197	chr2	80221897	80221898	rs10180106	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	2p12	CTNNA2	rs10180106-A	0.2813	5E-7	(EA)	5.03	z score increase	Affymetrix, Illumina [up to 1994688]	N
1197	chr2	80281172	80281173	rs6738962	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		2p12	CTNNA2	rs6738962-?	0.04	1E-8		0.18	unit decrease	Illumina [NR] (imputed)	N
1197	chr2	80323001	80323002	rs149599511	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2p12	NR	rs149599511-?	NR	7E-6		0.1542	[0.088-0.22] unit increase	Illumina [at least 560000] (imputed)	N
1198	chr2	80396684	80396685	rs141519390	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	2p12	NR	rs141519390-?	NR	2E-6		0.0384	[0.023-0.054] unit decrease	Illumina [~ 7800000] (imputed)	N
1198	chr2	80421804	80421805	rs112806496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs112806496-C	0.9129	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1198	chr2	80421804	80421805	rs112806496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p12	Intergenic	rs112806496-C	0.9129	2E-12	(MTAG)	0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1198	chr2	80421804	80421805	rs112806496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2p12	Intergenic	rs112806496-C	0.9093	6E-9	(MTAG)	0.0232	[0.015-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1199	chr2	80484592	80484593	rs2862025	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	NR	rs2862025-?	NR	1E-6		4.836	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1199	chr2	80517752	80517753	rs1446110	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs1446110-C	0.3264	4E-6		4.622	z score decrease	Illumina [7275796] (imputed)	N
1199	chr2	80566636	80566637	rs56928399	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	2p12	NR	rs56928399-A		2E-6		0.4797	[0.28-0.68] unit decrease	Illumina [12770451] (imputed)	N
1199	chr2	80567533	80567534	rs17018999	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	2p12	NR	rs17018999-C		6E-6		0.6136	[0.35-0.88] unit increase	Illumina [12759548] (imputed)	N
1199	chr2	80567533	80567534	rs17018999	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	2p12	NR	rs17018999-C		3E-7		0.6282	[0.39-0.87] unit increase	Illumina [12764477] (imputed)	N
1199	chr2	80588090	80588091	rs11894424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs11894424-A	0.9524	2E-10		0.0209	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1199	chr2	80588090	80588091	rs11894424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p12	Intergenic	rs11894424-A	0.9524	4E-10	(MTAG)	0.0193	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1200	chr2	80647876	80647877	rs1348557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p12		rs1348557-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1200	chr2	80647876	80647877	rs1348557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs1348557-A	0.8855	1E-9	(conditional-joint)	0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1200	chr2	80692890	80692891	rs55803020	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p12		rs55803020-C	0.745	8E-14		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1200	chr2	80693299	80693300	rs6727872	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs6727872-C	0.265	1E-9		0.00742327	[0.005-0.0098] unit decrease	NR [9732723] (imputed)	N
1200	chr2	80695604	80695605	rs113213559	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2p12	NR	rs113213559-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
1200	chr2	80703378	80703379	rs4852567	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	2p12	CTNNA2	rs4852567-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
1200	chr2	80703378	80703379	rs4852567	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	2p12	CTNNA2	rs4852567-A	0.2834	4E-8		0.0149	[0.0096-0.0202] unit increase	NR [NR]	N
1201	chr2	80748806	80748807	rs6750107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p12	NR	rs6750107-A	0.386875	3E-8	(Conditioned on chr2:80999398)	0.014565138	[0.0094-0.0197] unit increase	NR [~ 10000000] (imputed)	N
1201	chr2	80794914	80794915	rs191655746	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2p12	NR	rs191655746-?		3E-8	(PCB169)	1.73	[1.12-2.34] unit decrease	Illumina [8736858] (imputed)	N
1201	chr2	80798320	80798321	rs72918807	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p12	NR	rs72918807-A	0.01394	1E-8	(GSN)	0.05362	NR unit increase	Illumina [1671387] (imputed)	N
1201	chr2	80871003	80871004	rs62152019	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2p12	NR	rs62152019-G	0.053	2E-6		0.369822	[0.22-0.52] unit increase	Illumina [~ 6600000] (imputed)	N
1202	chr2	80931536	80931537	rs144851691	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	2p12	NR	rs144851691-T	0.00414394	3E-9		5.95	z score increase	NR [10847151] (imputed)	N
1202	chr2	80951822	80951823	rs1265750	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	LRRTM1	rs1265750-?	NR	1E-6	(pyruvate)	0.36023825	[0.21-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1202	chr2	80998960	80998961	rs1845018	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs1845018-T	0.512	5E-12		0.00763495	[0.0055-0.0098] unit increase	NR [9732723] (imputed)	N
1202	chr2	80999397	80999398	rs12714017	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p12	NR	rs12714017-C	0.511	4E-9		0.015396497	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
1203	chr2	81004625	81004626	rs10179482	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p12		rs10179482-G	0.516	3E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
1203	chr2	81013735	81013736	rs1492546	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2p12	LRRTM1	rs1492546-C	0.4489	9E-11		0.014153526	[0.0099-0.0184] unit decrease	Affymetrix [11514654] (imputed)	N
1203	chr2	81013735	81013736	rs1492546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p12		rs1492546-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1204	chr2	81157534	81157535	rs1826411	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p12	NR	rs1826411-?	NR	2E-7	(AA)	1.4592	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1204	chr2	81184768	81184769	rs7598737	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	2p12	NR	rs7598737-?	NR	7E-6		4.596	[2.68-6.52] unit decrease	Illumina [498648]	N
1204	chr2	81241810	81241811	rs12465939	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	2p12		rs12465939-C	NR	2E-7	(additive)	0.566	[0.351-0.78] unit decrease	Illumina [5894709] (imputed)	N
1205	chr2	81295336	81295337	rs113626797	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p12	NR	rs113626797-?	NR	5E-7	(AA)	1.4247	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1206	chr2	81414402	81414403	rs139156635	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p12	NR	rs139156635-A	0.02265	4E-9	(TTN)	0.9058	NR unit increase	Illumina [1671387] (imputed)	N
1206	chr2	81423593	81423594	rs144618652	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TENM3	5,360 Icelandic ancestry individuals	NA	2p12		rs144618652-C	0.01043	8E-19		0.120514	[0.094-0.147] unit increase	Illumina [7506463] (imputed)	N
1206	chr2	81442099	81442100	rs74585555	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Testosterone levels in polycystic ovary syndrome	957 European ancestry cases	1,516 European ancestry cases	2p12	intergenic	rs74585555-A	0.07	5E-7		15.56	[9.82-21.30] ng/dL increase	Illumina [at least 624044] (imputed)	N
1207	chr2	81557902	81557903	rs146131169	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	2p12		rs146131169-A	0.01396	2E-6		2.037	[1.521-2.728]	Affymetrix [7975321] (imputed)	N
1207	chr2	81574757	81574758	rs10208516	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	2p12	CTNNA2	rs10208516-?		7E-6				Affymetrix, Illumina [1348798]	N
1207	chr2	81621596	81621597	rs7580959	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p12	NR	rs7580959-C	0.322	4E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
1207	chr2	81634761	81634762	rs12472681	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	2p12	LQC1720	rs12472681-?	0.05	6E-6	(female)	2.004	[1.49-2.70]	Illumina [5595657] (imputed)	N
1208	chr2	81665309	81665310	rs1347504	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	2p12	NR	rs1347504-?	NR	3E-6		0.2765	[0.16-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
1208	chr2	81666397	81666398	rs11126811	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	2p12	NR	rs11126811-T	NR	4E-6	(AA)	0.242138	[0.14-0.35] unit increase	Affymetrix [up to 6007810] (imputed)	N
1208	chr2	81668807	81668808	rs10496265	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2p12	intergenic	rs10496265-?	NR	1E-8	(age at natural menopause)			Affymetrix [70897]	N
1208	chr2	81741749	81741750	rs6752979	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p12	CTNNA2	rs6752979-G	0.683257	1E-9		0.00895678	[0.0061-0.0118] unit decrease	Affymetrix [12370749]	N
1208	chr2	81741749	81741750	rs6752979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p12		rs6752979-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1208	chr2	81751123	81751124	rs10496262	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2p12	intergenic	rs10496262-?	NR	3E-7	(age at natural menopause)			Affymetrix [70897]	N
1208	chr2	81751339	81751340	rs183869217	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs183869217-C	0.9409	5E-9		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1208	chr2	81769561	81769562	rs17020436	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p12	NR	rs17020436-?	NR	7E-14				Affymetrix [NR]	N
1209	chr2	81792735	81792736	rs11126822	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p12	NA	rs11126822-A	0.3139	2E-9		0.011	[0.0075-0.0145] unit increase	NR [~ 27400000] (imputed)	N
1209	chr2	81810455	81810456	rs77532903	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2p12	Intergenic	rs77532903-C	0.035	2E-8	(MTAG)	0.0203	[0.013-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1209	chr2	81822180	81822181	rs17020489	25042611	Griffin PJ	2014-07-19	Am J Hematol	The genetics of hemoglobin A2 regulation in sickle cell anemia.	Hemoglobin A2 levels in sickle cell anemia	618 African American cases	173 African American cases, 398 Chinese ancestry individuals	2p12	NR	rs17020489-A	0.3	3E-6	(AA)			Illumina [NR]	N
1209	chr2	81855724	81855725	rs6736587	24124408	Hong KW	2013-09-30	Genomics Inform	Genome-wide association study of orthostatic hypotension and supine-standing blood pressure changes in two korean populations.	Orthostatic hypotension	667 Korean ancestry cases,  5,761 Korean ancestry controls	NA	2p12	CTNNA2	rs6736587-C	0.16	5E-8	(Delta SBP)	1.38	[NR] mmHg decrease	Affymetrix [333651]	N
1209	chr2	81856525	81856526	rs12615721	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2p12	intergenic	rs12615721-?	NR	8E-6	(FEV1 decline in asthmatics)	0.3026	[0.17-0.44] unit decrease	Illumina [~ 2500000] (imputed)	N
1209	chr2	81868693	81868694	rs116379118	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	2p12	Intergenic	rs116379118-T	0.986	8E-7		4.106	[2.47-5.74] unit increase	Illumina [9520174] (imputed)	N
1209	chr2	81872921	81872922	rs12052359	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	2p12	AC013262.1	rs12052359-A	0.062	7E-6		0.224	[0.127-0.321] unit increase	Affymetrix [808465]	N
1209	chr2	81883280	81883281	rs2118823	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	2p12	NR	rs2118823-?	NR	5E-6		0.2735	[0.16-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
1210	chr2	81930624	81930625	rs72819868	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	2p12	NR	rs72819868-?	NR	1E-6		0.0974	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1210	chr2	81997553	81997554	rs145185252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p12	NR	rs145185252-G	0.01045	4E-10	(HSPH1)	0.0837	NR unit increase	Illumina [1671387] (imputed)	N
1210	chr2	81997553	81997554	rs145185252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p12	NR	rs145185252-G	0.01045	3E-8	(HSPA6)	0.03147	NR unit increase	Illumina [1671387] (imputed)	N
1210	chr2	81999567	81999568	rs72919450	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2p12		rs72919450-T	0.0997	2E-8		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1210	chr2	82007017	82007018	rs138258488	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p12	Intergenic	rs138258488-G	0.998	4E-6	(AA)	0.169	unit increase	Illumina [NR] (imputed)	N
1210	chr2	82012691	82012692	rs148143931	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p12	Intergenic	rs148143931-T	NR	6E-6	(men)	0.174023	[0.099-0.249] unit increase	Illumina [13520550] (imputed)	N
1210	chr2	82016462	82016463	rs75598744	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p12	Intergenic	rs75598744-C	0.997	4E-6	(AA)	0.168	unit increase	Illumina [NR] (imputed)	N
1210	chr2	82025184	82025185	rs80004662	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	2p12	CTNNA2	rs80004662-A	NR	7E-9		5.784	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1210	chr2	82026933	82026934	rs181660893	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p12	Intergenic	rs181660893-A	0.997	3E-6	(AA)	0.17	unit increase	Illumina [NR] (imputed)	N
1210	chr2	82028389	82028390	rs113691307	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	2p12	CTNNA2	rs113691307-C	NR	7E-9		5.783	NR z-score decrease	Illumina [~ 17000000] (imputed)	N
1211	chr2	82069554	82069555	rs186571412	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2p12	intergenic	rs186571412-A	NR	1E-7		0.51860553	[0.33-0.71] unit decrease	Illumina [> 6200000] (imputed)	N
1211	chr2	82079856	82079857	rs1432180	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	2p12	NR	rs1432180-?	NR	2E-7	(NKp44)	0.11	[0.071-0.149] unit increase	Illumina [4020654] (imputed)	N
1211	chr2	82094565	82094566	rs6715448	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	2p12	NR	rs6715448-T	0.29	3E-6	(AA)	0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1211	chr2	82120516	82120517	rs78797065	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p12	Intergenic	rs78797065-C	0.997	1E-6	(AA)	0.176	unit increase	Illumina [NR] (imputed)	N
1212	chr2	82205626	82205627	rs2685200	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	ENSG00000231781	rs2685200-A	NR	5E-8		5.451	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1212	chr2	82236089	82236090	rs144436018	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	2p12	LOC102724542	rs144436018-G	NR	3E-6	(men)	0.247	[0.14-0.35] unit increase	Illumina [5527232] (imputed)	N
1213	chr2	82325530	82325531	rs11687765	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	2p12	intergenic	rs11687765-?	NR	3E-8	(Valine)			Illumina [~ 2500000] (imputed)	N
1213	chr2	82325815	82325816	rs191356286	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2p12	Intergenic	rs191356286-C	0.997	8E-7	(AA)	0.174	unit increase	Illumina [NR] (imputed)	N
1213	chr2	82352496	82352497	rs73939615	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p12	NR	rs73939615-?	NR	1E-6	(Latino)	1.2363	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1213	chr2	82444106	82444107	rs11678106	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2p12	NR	rs11678106-T	NR	5E-9		5.86	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1213	chr2	82444106	82444107	rs11678106	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	ENSG00000229560	rs11678106-T	NR	2E-9		6.013	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1214	chr2	82465006	82465007	rs6714647	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2p12	intergenic	rs6714647-A	0.756	2E-6		1.06599	[1.04-1.09]	NR [9372253] (imputed)	N
1214	chr2	82477943	82477944	rs10208061	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p12	LRRTM1	rs10208061-?	NR	3E-6	(leucine)	0.61242366	[0.36-0.87] unit increase	Affymetrix [at least 2500000] (imputed)	N
1214	chr2	82546191	82546192	rs56678805	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	NR	rs56678805-?	NR	5E-6		4.575	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1215	chr2	82616449	82616450	rs17021683	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	2p12	LOC1720, CTNNA2	rs17021683-?	0.001852	2E-8		22.87	[21.29-24.45]	Affymetrix [547296]	N
1215	chr2	82619772	82619773	rs145701320	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p12	Intergenic	rs145701320-G	NR	6E-6	(men)	0.228532	[0.13-0.33] unit decrease	Illumina [13520550] (imputed)	N
1217	chr2	82848837	82848838	rs74490511	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2p12	NR	rs74490511-?	NR	2E-6		4.722	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1217	chr2	82915339	82915340	rs146204855	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p12	Intergenic	rs146204855-T	NR	9E-6	(men)	0.173967	[0.097-0.251] unit increase	Illumina [13520550] (imputed)	N
1217	chr2	82922194	82922195	rs58011745	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2p12	intergenic	rs58011745-A	0.035	2E-8	(YKL-40)	25.632	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1218	chr2	83029468	83029469	rs17022444	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	2p12	intergenic	rs17022444-?	NR	1E-10	(SAS)			Affymetrix [492000]	N
1219	chr2	83165467	83165468	rs114327102	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2p12		rs114327102-?	NR	5E-6		0.9826112	[0.56-1.4] unit increase	Illumina [9901720] (imputed)	N
1219	chr2	83186902	83186903	rs137956966	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2p12	Intergenic	rs137956966-G	NR	1E-6	(men)	0.256376	[0.15-0.36] unit increase	Illumina [13520550] (imputed)	N
1220	chr2	83247996	83247997	rs56208390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2p12	NR	rs56208390-G	0.123	1E-11		0.0111388	[0.0079-0.0144] unit increase	NR [9732723] (imputed)	N
1220	chr2	83247996	83247997	rs56208390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2p12	NR	rs56208390-G	0.123	3E-8		0.021563562	[0.014-0.029] unit increase	NR [~ 10000000] (imputed)	N
1220	chr2	83283646	83283647	rs62148957	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotellamassilia sp000437675 abundance in stool	5,959 Finnish ancestry individuals	NA	2p12		rs62148957-C	0.025408	3E-8		0.245921	[0.16-0.33] unit increase	Illumina [7980478] (imputed)	N
1220	chr2	83289091	83289092	rs75129011	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2p12		rs75129011-?	NR	7E-6		0.9228858	[0.52-1.32] unit increase	Illumina [9901720] (imputed)	N
1223	chr2	83632674	83632675	rs17380051	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2p11.2	FLJ37357	rs17380051-?	NR	5E-6	(3-phosphoglyceric acid)	0.71965396	[0.41-1.03] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1224	chr2	83775757	83775758	rs62153550	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA5394 sp002409725 abundance in stool	5,959 Finnish ancestry individuals	NA	2p11.2		rs62153550-T	0.0259609	9E-9		0.150806	[0.099-0.202] unit decrease	Illumina [7980478] (imputed)	N
1225	chr2	84017087	84017088	rs2084597	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	2p11.2	SUCLG1	rs2084597-T	NR	5E-8	(PWY-6731_starch_degradation_III)	5.4584117	NR Z-score increase	Illumina [8100000] (imputed)	N
1227	chr2	84199814	84199815	rs78245350	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p11.2	NR	rs78245350-G	0.01742	3E-8	(PCBD1)	0.07323	NR unit increase	Illumina [1671387] (imputed)	N
1227	chr2	84233915	84233916	rs10199793	34532976	Wan J	2021-09-17	J Thromb Haemost	Kallikrein augments the anticoagulant function of the protein C system in thrombin generation.	Thrombin generation parameter (time to peak thrombin generation)	327 European ancestry individuals	NA	2p11.2		rs10199793-G	0.292	4E-7		0.374	min decrease	Illumina [7000000] (imputed)	N
1227	chr2	84245167	84245168	rs13398848	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2p11.2	intergenic	rs13398848-G	0.181	1E-6	(AA)	0.168	[NR] unit increase	Illumina [948658]	N
1227	chr2	84245167	84245168	rs13398848	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2p11.2	intergenic	rs13398848-G	0.074	5E-6		1.59	[1.30-1.95]	Illumina [948658]	N
1227	chr2	84246585	84246586	rs1447537	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	2p11.2	intergenic	rs1447537-A	0.31	4E-6		0.15	[0.09-0.21] unit decrease	Illumina [~ 318327]	N
1228	chr2	84350916	84350917	rs1534238	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2p11.2	intergenic	rs1534238-?	0.381	3E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
1229	chr2	84444885	84444886	rs6547537	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p11.2	NR	rs6547537-G	0.784824532589286	4E-6	(IGP36)	0.1881	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
1229	chr2	84472984	84472984	rs143781777	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	2p11.2	NR	rs143781777-?	0.473579	6E-6		0.095	[0.054-0.136] unit increase	NR [9260588] (imputed)	N
1230	chr2	84656922	84656923	rs78316549	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p11.2	NR	rs78316549-T	0.0122	2E-8	(SOD2)	2.433	NR unit increase	Illumina [1671387] (imputed)	N
1231	chr2	84709214	84709215	rs7581224	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2p11.2	SUCLG1	rs7581224-T	0.14	2E-6	(AA)	0.2	[0.12-0.28] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1231	chr2	84714755	84714756	rs146331657	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2p11.2	NR	rs146331657-?	NR	5E-11				Illumina [7760689] (imputed)	N
1232	chr2	84824975	84824976	rs185867524	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2p11.2	DNAH6	rs185867524-A	0.004	5E-6	(liability model)	0.86	[0.49-1.23] unit increase	NR [19725427] (imputed)	N
1232	chr2	84855611	84855612	rs12464040	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	2p11.2	DNAH6	rs12464040-T	NR	2E-6	(females)	0.15	[0.091-0.209] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1232	chr2	84860329	84860330	rs3890771	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p11.2	NR	rs3890771-?	NR	2E-10				Affymetrix [NR]	N
1232	chr2	84906914	84906915	rs1918690	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	2p11.2	DNAH6	rs1918690-T	0.208	4E-9		1.27	[NR]	Illumina [8207076] (imputed)	N
1234	chr2	85111552	85111553	rs548487604	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	2p11.2	TRABD2A	rs548487604-C		9E-9		0.749	[NR] unit increase	Illumina [24111857] (imputed)	N
1235	chr2	85236571	85236572	rs7563083	30631343	Rolfe S	2018-12-18	Front Genet	Associations Between Genetic Data and Quantitative Assessment of Normal Facial Asymmetry.	Normal facial asymmetry (angle of surface orientation score)	3,186 European ancestry individuals	NA	2p11.2	TCF7L1	rs7563083-?	NR	1E-8				Illumina [747780]	N
1236	chr2	85415428	85415429	rs2568207	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2p11.2	TCF7L1	rs2568207-T	0.61	1E-13		7.4	z-score increase	Affymetrix [4314223] (imputed)	N
1236	chr2	85446485	85446486	rs6547598	30412241	Takeuchi F	2018-11-09	Hum Mol Genet	Genome-wide association study of cervical cancer suggests a role for ARRDC3 gene in human papillomavirus infection.	Cervical cancer	2,609 East Asian ancestry cases, 4,712 East Asian ancestry controls	1,461 Han Chinese ancestry cases, 3,295 Han Chinese ancestry controls	2p11.2	NR	rs6547598-A	0.93	1E-6		1.35	[NR]	Affymetrix, Illumina [4602429] (imputed)	N
1236	chr2	85447483	85447484	rs6547599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p11.2	TCF7L1	rs6547599-T	0.60308	4E-9		0.01363512	[0.0091-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1236	chr2	85447483	85447484	rs6547599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p11.2		rs6547599-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1236	chr2	85453713	85453713	rs10647217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2p11.2		rs10647217-TCTC	NR	2E-31		0.0262	[0.022-0.031] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1236	chr2	85453713	85453713	rs10647217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2p11.2		rs10647217-TCTC	NR	2E-16		0.0169	[0.013-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1236	chr2	85453713	85453713	rs10647217	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p11.2	NR	rs10647217-TCTC	0.6138	2E-8		0.001232	[0.00077-0.00169] unit increase	Affymetrix [NR] (imputed)	N
1236	chr2	85453713	85453713	rs10647217	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2p11.2	NR	rs10647217-TCTC	NR	2E-11		0.0167	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1237	chr2	85462772	85462773	rs12477587	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2p11.2		rs12477587-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1237	chr2	85474282	85474283	rs1012256	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2p11.2	NR	rs1012256-A	NR	5E-9		0.0163	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1237	chr2	85481523	85481524	rs11684211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2p11.2	NR	rs11684211-A	NR	3E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1237	chr2	85483349	85483350	rs2043230	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p11.2	NR	rs2043230-A	0.4354	5E-8	(European)	0.0339	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1237	chr2	85484817	85484818	rs11904127	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2p11.2	TCF7L1	rs11904127-A	0.5512	1E-8		0.0324	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1237	chr2	85486353	85486354	rs11681706	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2p11.2		rs11681706-G	NR	8E-11		0.014	[0.0097-0.0183] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1237	chr2	85489010	85489011	rs2366264	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p11.2	TCF7L1	rs2366264-T	0.4894	3E-13		0.183	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1237	chr2	85490111	85490112	rs11126989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2p11.2		rs11126989-A	NR	6E-22		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1237	chr2	85490111	85490112	rs11126989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2p11.2		rs11126989-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1237	chr2	85491364	85491365	rs11689667	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p11.2	TCF7L1	rs11689667-T	0.7488	5E-7	(Japanese)	0.2976	[0.18-0.41] unit increase	Illumina [6200000] (imputed)	N
1237	chr2	85491364	85491365	rs11689667	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2p11.2	TCF7L1	rs11689667-T	0.54	2E-8		0.176	[0.12-0.23] unit increase	Affymetrix [~ 9800000] (imputed)	N
1237	chr2	85498782	85498783	rs11675489	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2p11.2	TCF7L1	rs11675489-A	0.546155	5E-13		0.0133231	[0.0097-0.0169] unit increase	NR [13737936] (imputed)	N
1237	chr2	85502235	85502236	rs62162674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p11.2		rs62162674-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1237	chr2	85502235	85502236	rs62162674	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2p11.2	TCF7L1	rs62162674-C	0.2559	9E-7	(Japanese)	0.2895	[0.17-0.41] unit decrease	Illumina [6200000] (imputed)	N
1237	chr2	85502235	85502236	rs62162674	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2p11.2	TCF7L1	rs62162674-G		5E-7		0.183	unit increase	Affymetrix [at least 2696785] (imputed)	N
1237	chr2	85502235	85502236	rs62162674	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p11.2	TCF7L1	rs62162674-G		2E-12		0.181	unit increase	Affymetrix [at least 2696785] (imputed)	N
1237	chr2	85503138	85503139	rs6745529	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2p11.2		rs6745529-?	NR	1E-11		0.0141079	[0.01-0.018] unit increase	Affymetrix [20259828] (imputed)	N
1237	chr2	85504988	85504989	rs4346385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p11.2		rs4346385-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1237	chr2	85527585	85527586	rs59211453	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p11.2	NR	rs59211453-T	0.144	1E-5	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1237	chr2	85531115	85531116	rs41288837	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2p11.2		rs41288837-T	0.02	8E-9		5.78	z score increase	Affymetrix [9061022] (imputed)	N
1237	chr2	85533226	85533227	rs2271629	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TCF7L1	rs2271629-?	NR	9E-10	(female)	3.40755	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1237	chr2	85540646	85540648	rs10533107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2p11.2		rs10533107-A	NR	2E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2p11.2		rs4599108-T	NR	1E-16		0.0192	[0.015-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2p11.2		rs4599108-T	NR	8E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2p11.2	AC093162.5	rs4599108-T	0.486467	3E-16		0.018207872	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2p11.2	AC093162.5	rs4599108-T	0.486535	5E-12		0.015387926	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2p11.2	AC093162.5	rs4599108-T	0.486476	1E-20		0.020841885	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2p11.2	AC093162.5	rs4599108-T	0.486487	6E-10		0.01379245	[0.0094-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs4599108-T	0.584702	3E-14				Affymetrix, Illumina [24649327] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2p11.2	NR	rs4599108-T	0.488367	1E-16		0.016195	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs4599108-T	0.547649	5E-19				Affymetrix, Illumina [23114412] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2p11.2	NR	rs4599108-T	0.488121	7E-22		0.0192	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2p11.2	TGOLN2	rs4599108-C	0.512342	1E-12		0.0136684	[0.0099-0.0174] unit decrease	Affymetrix [NR] (imputed)	N
1237	chr2	85543221	85543222	rs4599108	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2p11.2	TGOLN2	rs4599108-C	0.512398	1E-12		0.0140406	[0.01-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1237	chr2	85545489	85545490	rs7428	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear protrusion	4,919 Latin American individuals	NA	2p11.2	NR	rs7428-?	NR	8E-7	(FDR adjusted)			Illumina [671038]	N
1237	chr2	85551695	85551696	rs17026212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p11.2		rs17026212-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1237	chr2	85552708	85552709	rs4444526	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p11.2		rs4444526-T	0.46	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
1237	chr2	85560561	85560562	rs10198423	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p11.2	NR	rs10198423-G	NR	5E-9		0.023	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1237	chr2	85560561	85560562	rs10198423	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2p11.2	NR	rs10198423-G	0.356	4E-9	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1237	chr2	85586177	85586178	rs75700570	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPG	5,362 Icelandic ancestry individuals	NA	2p11.2		rs75700570-G	0.01547	4E-74		1.32342	[1.18-1.47] unit decrease	Illumina [7506463] (imputed)	N
1238	chr2	85610022	85610023	rs143448563	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	CAPG	rs143448563-A	0.9834375	1E-48	(CAPG, 4968_50_1)	1.4004445	[1.22-1.58] unit increase	Illumina [> 1000000] (imputed)	N
1238	chr2	85626523	85626524	rs35666320	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPG	5,362 Icelandic ancestry individuals	NA	2p11.2		rs35666320-T	0.1832	1E-10		0.154155	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
1238	chr2	85655401	85655402	rs6547617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p11.2	SH2D6	rs6547617-A	0.564582	1E-17		0.019513214	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1238	chr2	85655401	85655402	rs6547617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p11.2	SH2D6	rs6547617-A	0.564598	4E-21		0.021308178	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1238	chr2	85655401	85655402	rs6547617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs6547617-T	0.436828	9E-23				Affymetrix, Illumina [17210439] (imputed)	N
1238	chr2	85655401	85655402	rs6547617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2p11.2	NR	rs6547617-T	0.436152	3E-26		0.020511	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1238	chr2	85658861	85658862	rs56228924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs56228924-A	0.367555	3E-22				Affymetrix, Illumina [24588908] (imputed)	N
1238	chr2	85658992	85658993	rs56017561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p11.2	NR	rs56017561-C	0.444158	5E-23		0.018345	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1238	chr2	85659341	85659342	rs34171730	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2p11.2		rs34171730-C	NR	6E-13		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1238	chr2	85659526	85659527	rs55762624	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p11.2	SH2D6	rs55762624-T	0.4469	4E-11		0.02422184	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1238	chr2	85699749	85699750	rs7577642	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2p11.2	SH2D6	rs7577642-?	0.27	7E-6	(sIL-6R)			Illumina [496032]	N
1238	chr2	85700825	85700826	rs10196697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2p11.2		rs10196697-A	NR	3E-8		0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1238	chr2	85700923	85700924	rs960066	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p11.2	NR	rs960066-?	NR	2E-39				Affymetrix [NR]	N
1238	chr2	85703307	85703308	rs6714421	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2p11.2	NR	rs6714421-A	0.61	3E-9		0.0112	[0.0074-0.015] unit increase	NR [NR]	N
1238	chr2	85705676	85705677	rs11688246	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	2p11.2	NR	rs11688246-?	0.052	1E-7		1.832	[1.469-2.285] unit increase	Illumina [563945]	N
1238	chr2	85715142	85715143	rs186838326	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	2p11.2	SH2D6, MAT2A	rs186838326-T	0.059	8E-7		0.193	[0.116-0.270] unit increase	Illumina [11942402] (imputed)	N
1239	chr2	85722672	85722672	rs138389495	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p11.2	AC016753.7	rs138389495-ATG	0.194602	3E-12		0.02003987	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85728607	85728608	rs77427278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2p11.2		rs77427278-C	0.016245	6E-11		0.058880195	[0.041-0.076] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85738373	85738374	rs7591175	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2p11.2	SH2D6, PARTICL	rs7591175-?	NR	2E-30		0.0571324	[0.047-0.067] unit increase	Illumina [4804024] (imputed)	N
1239	chr2	85739983	85739984	rs9751370	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2p11.2	SH2D6, PARTICL	rs9751370-?	NR	7E-10		0.0612687	[0.042-0.081] unit increase	Illumina [19707525] (imputed)	N
1239	chr2	85742174	85742175	rs2166529	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2p11.2	intergenic	rs2166529-T	0.458	2E-22		0.063	[0.051-0.075] unit increase	Affymetrix [7947838] (imputed)	N
1239	chr2	85742296	85742297	rs2886722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p11.2		rs2886722-G	NR	6E-20		0.0817	[0.064-0.099] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1239	chr2	85742296	85742297	rs2886722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p11.2		rs2886722-G	0.352071795	4E-9		0.08224294	[0.055-0.11] unit increase	Illumina [13427135] (imputed)	N
1239	chr2	85742296	85742297	rs2886722	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	2p11.2	MAT2A	rs2886722-G	0.40358	1E-9		1.07	[1.05-1.09]	NR [10903881] (imputed)	N
1239	chr2	85746147	85746148	rs78310123	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2p11.2		rs78310123-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1239	chr2	85747370	85747371	rs10496316	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p11.2	NR	rs10496316-C	NR	2E-13		0.0244	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1239	chr2	85749683	85749684	rs116839776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2p11.2		rs116839776-A	0.0162020000000001	1E-13		0.06664191	[0.049-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85754341	85754342	rs13394343	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2p11.2	SH2D6, MAT2A, PARTICL	rs13394343-C	0.57	4E-10		0.01053	[0.0072-0.0138] unit increase	Affymetrix [11709857] (imputed)	N
1239	chr2	85754577	85754578	rs12714144	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2p11.2	PARTICL	rs12714144-A	0.872	2E-11	(EA)	0.02	[0.014-0.026] unit increase	NR [12082474] (imputed)	N
1239	chr2	85754577	85754578	rs12714144	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2p11.2	PARTICL	rs12714144-A	NR	8E-14		0.0219	[0.016-0.028] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1239	chr2	85754577	85754578	rs12714144	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2p11.2	LOC100630918	rs12714144-A	0.8733	5E-14		0.0224637	[0.017-0.028] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1239	chr2	85754577	85754578	rs12714144	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	2p11.2	PARTICL	rs12714144-A	NR	3E-6		1.0473886	[1.03-1.07]	Affymetrix, Illumina [8326000] (imputed)	N
1239	chr2	85758298	85758299	rs13408713	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2p11.2	PARTICL	rs13408713-C	0.873611	2E-17		0.00649992	[0.005-0.008] unit increase	Affymetrix [13995440] (imputed)	N
1239	chr2	85759126	85759127	rs17026396	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	2p11.2	NR	rs17026396-T	0.62	3E-6	(Asian)	0.07	[0.039-0.101] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr2	85760394	85760395	rs6731005	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p11.2		rs6731005-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1239	chr2	85761278	85761279	rs6705839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2p11.2	RN7SL830P	rs6705839-T	0.455974	7E-10		0.013897895	[0.0095-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85762047	85762048	rs10176176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p11.2		rs10176176-T	NR	9E-11		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1239	chr2	85762047	85762048	rs10176176	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2p11.2	MAT2A	rs10176176-T	0.477885	9E-18		1.07	[1.05-1.08]	NR [8126035] (imputed)	N
1239	chr2	85762047	85762048	rs10176176	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2p11.2	VAMP8, GGCX, VAMP5	rs10176176-T	0.47	3E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [8600000] (imputed)	N
1239	chr2	85762208	85762209	rs1446669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	2p11.2		rs1446669-C	0.300668	7E-9		0.0281999	[0.019-0.038] unit decrease	Illumina [13469940] (imputed)	N
1239	chr2	85763519	85763520	rs6743030	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2p11.2	GGCX, LOC100630918, MAT2A	rs6743030-T	0.465	2E-23		0.0565	[0.045-0.068] unit increase	Affymetrix [at least 7947838] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p11.2		rs2028900-T	NR	4E-15		0.0662	[0.05-0.083] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (vasodilators used in cardiac diseases)	5,546 European ancestry cases, 237,113 European ancestry controls, 17,050 East Asian ancestry cases, 161,676 East Asian ancestry controls	NA	2p11.2		rs2028900-T	NR	2E-11		0.0698	[0.049-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2p11.2	NR	rs2028900-C	0.549915992	2E-7		1.0937226	[1.06-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2p11.2	NR	rs2028900-C	NR	3E-38		1.089	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2p11.2	NR	rs2028900-C	0.628	5E-6		1.093	[1.05-1.14]	Affymetrix, Illumina [10186136] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2p11.2	NR	rs2028900-T	0.449306	1E-11		0.01396	[0.0099-0.018] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1239	chr2	85767734	85767735	rs2028900	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	2p11.2	MAT2A	rs2028900-T	0.45	2E-8				Affymetrix [28000000] (imputed)	N
1239	chr2	85769710	85769711	rs1078004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unstable angina pectoris	9,481 European ancestry cases, 446,987 European ancestry controls, 5,891 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2p11.2		rs1078004-G	NR	2E-9		0.0755	[0.051-0.1] unit increase	Affymetrix, Illumina [25840389] (imputed)	N
1239	chr2	85769710	85769711	rs1078004	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2p11.2		rs1078004-?	NR	5E-9		0.903695	[0.87-0.94]	NR [680312]	N
1239	chr2	85769974	85769975	rs2043675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs2043675-G	0.288613	8E-12				Affymetrix, Illumina [19905671] (imputed)	N
1239	chr2	85773656	85773656	rs10700825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2p11.2		rs10700825-CTG	NR	2E-17		0.0672	[0.052-0.083] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
1239	chr2	85780535	85780536	rs699664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2p11.2		rs699664-T	NR	6E-9		0.0735	[0.049-0.098] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1239	chr2	85780535	85780536	rs699664	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2p11.2		rs699664-T	NR	1E-10		0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1239	chr2	85780535	85780536	rs699664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs699664-T	0.328178	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
1239	chr2	85780535	85780536	rs699664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p11.2		rs699664-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1239	chr2	85783764	85783765	rs17026452	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p11.2	GGCX	rs17026452-C	0.056997	8E-10		0.029440843	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85788174	85788175	rs7568458	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2p11.2		rs7568458-T	NR	1E-12		1.1094	NR	Affymetrix [7846216] (imputed)	N
1239	chr2	85788174	85788175	rs7568458	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2p11.2		rs7568458-T	NR	6E-9		1.099	[1.065-1.134]	Affymetrix [7846216] (imputed)	N
1239	chr2	85788174	85788175	rs7568458	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2p11.2	VAMP5, VAMP8, GGCX	rs7568458-A	0.452	2E-13		1.06	[1.05-1.08]	Affymetrix [9149595] (imputed)	N
1239	chr2	85788174	85788175	rs7568458	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2p11.2	VAMP5, VAMP8, GGCX	rs7568458-A	0.448518	4E-10		1.06	[1.04- 1.08]	Affymetrix, Illumina [8600000] (imputed)	N
1239	chr2	85788269	85788270	rs10172544	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2p11.2	GGCX	rs10172544-C	0.591294	2E-8		0.0114209	[0.0075-0.0154] unit increase	Affymetrix [NR] (imputed)	N
1239	chr2	85794296	85794297	rs10187424	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	2p11.2	NR	rs10187424-A	NR	2E-9		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1239	chr2	85794296	85794297	rs10187424	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2p11.2	NR	rs10187424-T	0.57	1E-20		1.08	[1.06-1.09]	Illumina [20370935] (imputed)	N
1239	chr2	85794296	85794297	rs10187424	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	2p11.2	NR	rs10187424-A	0.58	5E-6	(European)	1.11	[1.06-1.16]	Affymetrix [up to 19977088] (imputed)	N
1239	chr2	85794296	85794297	rs10187424	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	2p11.2	NR	rs10187424-A	0.58	3E-9		1.13	[1.08-1.17]	Affymetrix [up to 19977088] (imputed)	N
1239	chr2	85794296	85794297	rs10187424	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	2p11.2	GGCX, VAMP8, VAMP5, RNF181	rs10187424-A	0.59	3E-15		1.09	[1.06-1.12]	NR [2600000] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2p11.2	VAMP8	rs13007211-T	0.311416	2E-9		0.014572917	[0.0098-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2p11.2	VAMP8	rs13007211-T	0.311399	3E-13		0.0177312	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p11.2	NR	rs13007211-T	0.311262	7E-15		0.017454	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2p11.2	VAMP8	rs13007211-T	0.3091	5E-10		0.02453909	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2p11.2	VAMP8	rs13007211-T	0.3092	4E-9		0.02323838	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1239	chr2	85801081	85801082	rs13007211	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	2p11.2	NR	rs13007211-A	0.6935	1E-9		0.0432	[0.029-0.057] unit increase	Illumina [NR]	N
1239	chr2	85801107	85801108	rs62165906	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p11.2	NR	rs62165906-?	NR	2E-7	(male)	0.30744	[0.19-0.42] unit increase	Affymetrix [7794483] (imputed)	N
1239	chr2	85801107	85801108	rs62165906	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2p11.2	NR	rs62165906-?	NR	2E-10		0.23736	[0.16-0.31] unit increase	Affymetrix [7794483] (imputed)	N
1239	chr2	85806067	85806068	rs3731827	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	2p11.2	NR	rs3731827-T	0.584	1E-9		1.13	[1.09-1.18]	Affymetrix [up to 19977088] (imputed)	N
1239	chr2	85808870	85808871	rs1058588	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2p11.2	VAMP8	rs1058588-T	0.41	4E-11		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
1239	chr2	85809988	85809989	rs1561198	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2p11.2	VAMP5, VAMP8	rs1561198-T	0.4568	2E-23		0.0549	[0.044-0.066] unit increase	NR [8041861] (imputed)	N
1239	chr2	85814372	85814373	rs72843867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p11.2	VAMP5	rs72843867-A	0.03923	2E-10		0.036674842	[0.025-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85814372	85814373	rs72843867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p11.2	VAMP5	rs72843867-A	0.039228	1E-10		0.03713462	[0.026-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1239	chr2	85814384	85814386	rs200779045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2p11.2	VAMP5	rs200779045-A	0.180439	1E-17		0.025005257	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1239	chr2	85814983	85814984	rs10206961	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	2p11.2	NR	rs10206961-A	NR	2E-6		0.01235	[0.0073-0.0174] unit decrease	Illumina [541614]	N
1239	chr2	85815953	85815954	rs13394092	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2p11.2	NR	rs13394092-C	0.16981400000000002	1E-8		0.00845489	[0.0052-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
1239	chr2	85815953	85815954	rs13394092	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2p11.2	NR	rs13394092-C	0.16981400000000002	8E-6		0.00818363	[0.0045-0.0119] unit increase	Affymetrix [16585866] (imputed)	N
1239	chr2	85816333	85816334	rs1254900	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2p11.2	NR	rs1254900-?	NR	4E-45				Affymetrix [NR]	N
1239	chr2	85818796	85818797	rs2289976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p11.2		rs2289976-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1239	chr2	85818885	85818886	rs14976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p11.2		rs14976-T	NR	4E-15		0.0129	[0.0098-0.016] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1239	chr2	85818885	85818886	rs14976	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p11.2	VAMP5	rs14976-T	0.3057	1E-12		0.0144	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
1239	chr2	85823476	85823477	rs34772095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2p11.2		rs34772095-T	NR	1E-13		0.0207	[0.015-0.026] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1239	chr2	85826720	85826721	rs11891495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2p11.2		rs11891495-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1240	chr2	85869769	85869770	rs17508809	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	2p11.2	USP39	rs17508809-G	0.109359	5E-6		0.507467	[0.29-0.73] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1240	chr2	85888783	85888784	rs3024832	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2p11.2	NR	rs3024832-C	NR	2E-9		0.0365	[0.025-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1240	chr2	85893740	85893741	rs1130866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	SFTPB	rs1130866-A	0.46578125	3E-189	(SFTPB, 10672_75_3)	0.6864448	[0.64-0.73] unit decrease	Illumina [> 1000000] (imputed)	N
1240	chr2	85909025	85909026	rs6547631	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p11.2	AC012454.4, GNLY	rs6547631-T	0.4613842	1E-14	(EA, Granulysin)	0.3379	[0.25-0.42] unit decrease	Affymetrix [509946]	N
1240	chr2	85912961	85912962	rs17430897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	2p11.2		rs17430897-T	0.05118	3E-47		0.616404	[0.53-0.7] unit increase	Illumina [7506463] (imputed)	N
1240	chr2	85912961	85912962	rs17430897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	2p11.2		rs17430897-T	0.05118	3E-22		0.418817	[0.33-0.5] unit increase	Illumina [7506463] (imputed)	N
1240	chr2	85912961	85912962	rs17430897	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p11.2	NR	rs17430897-T	0.045	3E-21	(Granulysin, GNLY.3195.50.2)	0.56	[0.44-0.68] unit increase	Affymetrix [10572788] (imputed)	N
1240	chr2	85920248	85920249	rs3755007	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	2p11.2		rs3755007-G	0.2911	2E-164		0.540112	[0.5-0.58] unit decrease	Illumina [7506463] (imputed)	N
1240	chr2	85932209	85932210	rs12714151	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SFTPB	5,367 Icelandic ancestry individuals	NA	2p11.2		rs12714151-T	0.447	6E-15		0.149296	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1240	chr2	85933002	85933003	rs12151742	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GNLY	5,366 Icelandic ancestry individuals	NA	2p11.2		rs12151742-T	0.2222	7E-260		0.705133	[0.66-0.75] unit increase	Illumina [7506463] (imputed)	N
1240	chr2	85934498	85934499	rs12151621	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p11.2	GNLY	rs12151621-A	0.227	7E-189	(Granulysin, GNLY.3195.50.2)	0.77	[0.71-0.83] unit increase	Affymetrix [10572788] (imputed)	N
1240	chr2	85934498	85934499	rs12151621	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p11.2	Intergenic	rs12151621-A	0.2120603	6E-76	(Granulysin)	0.9023	[0.81-0.99] unit increase	Affymetrix [509946]	N
1240	chr2	85935181	85935182	rs7603438	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	2p11.2	NR	rs7603438-?	NR	2E-32	(Granulysin)			Illumina [~ 4000000] (imputed)	N
1240	chr2	85935181	85935182	rs7603438	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	NR	rs7603438-A	0.77375	5E-214	(GNLY, 14102_6_3)	0.8634813	[0.81-0.91] unit decrease	Illumina [> 1000000] (imputed)	N
1240	chr2	85935181	85935182	rs7603438	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	NR	rs7603438-A	0.77375	2E-148	(GNLY, 3195_50_2)	0.73115337	[0.68-0.78] unit decrease	Illumina [> 1000000] (imputed)	N
1240	chr2	85935181	85935182	rs7603438	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	NR	rs7603438-A	0.77375	2E-10	(SFTPB, 10672_75_3)	0.18653852	[0.13-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1240	chr2	85935281	85935282	rs7577293	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2p11.2	NR	rs7577293-?	NR	5E-76	(EA, Granulysin)			Affymetrix [509946]	N
1241	chr2	86000499	86000500	rs4832012	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p11.2	ATOH8	rs4832012-C	0.51	9E-13		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1241	chr2	86003970	86003971	rs35976024	31502714	Wang J	2019-09-10	Genet Epidemiol	Genome-wide association study of circulating folate one-carbon metabolites.	Blood metabolite levels	1,788 European ancestry individuals	NA	2p11.2	ATOH8	rs35976024-A	0.32	5E-8	(total homocysteine)	0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1241	chr2	86015120	86015121	rs13402783	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	2p11.2	NR	rs13402783-G	NR	7E-9	(Cox proportional hazards regression model)	20.91	[7.47-58.50]	Illumina [810622]	N
1241	chr2	86015430	86015431	rs113626898	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	2p11.2		rs113626898-?	NR	9E-9		2.71418	[1.93-3.82]	NR [NR] (imputed)	N
1241	chr2	86051584	86051585	rs72842045	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2p11.2	intergenic	rs72842045-T	0.9889	8E-6		0.2088	[0.12-0.3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1241	chr2	86072075	86072076	rs2280312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2p11.2		rs2280312-A	NR	2E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1241	chr2	86086395	86086396	rs12478916	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs12478916-C	0.476778	9E-11				Affymetrix, Illumina [24246363] (imputed)	N
1241	chr2	86090071	86090072	rs7572209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs7572209-T	0.800699	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
1241	chr2	86090071	86090072	rs7572209	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2p11.2	NR	rs7572209-T	0.799166	8E-13		0.016785	[0.012-0.021] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1241	chr2	86095431	86095432	rs10865479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2p11.2	NR	rs10865479-T	0.714977	2E-13		0.0221171	[0.016-0.028] unit increase	Affymetrix [16580851] (imputed)	N
1241	chr2	86101010	86101011	rs6547638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2p11.2	ST3GAL5	rs6547638-C	0.719221	6E-11		0.016230868	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1241	chr2	86111687	86111688	rs1878905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p11.2	NR	rs1878905-C	0.51287	2E-13		0.013374	[0.0098-0.0169] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1242	chr2	86118276	86118278	rs57339844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2p11.2	ST3GAL5	rs57339844-G	0.429193	2E-17		0.019330068	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr2	86118276	86118278	rs57339844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2p11.2	ST3GAL5	rs57339844-G	0.4289	4E-9		0.02152956	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1242	chr2	86144768	86144769	rs35153287	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2p11.2		rs35153287-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1242	chr2	86145786	86145787	rs7593080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2p11.2		rs7593080-T	0.572097	1E-11		0.015241386	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1242	chr2	86163766	86163767	rs10202148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2p11.2	NR	rs10202148-G	0.738873	3E-10		0.00884922	[0.006-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
1242	chr2	86167438	86167439	rs12714159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2p11.2		rs12714159-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1242	chr2	86181220	86181221	rs12472588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2p11.2		rs12472588-C	0.702934	4E-10		0.015042201	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1242	chr2	86184026	86184027	rs1438153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs1438153-G	0.588871	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
1242	chr2	86184026	86184027	rs1438153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2p11.2	NR	rs1438153-G	0.700965	2E-12		0.014168	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1242	chr2	86210272	86210273	rs3937593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2p11.2		rs3937593-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1243	chr2	86280924	86280925	rs3770081	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (sad faces)	4,097 European ancestry individuals	NA	2p11.2	POLR1A, PTCD3, SNORD94, IMMT, MRPL35, REEP1	rs3770081-G	0.9622	2E-6		4.77	z score decrease	Illumina [2487351] (imputed)	N
1243	chr2	86301636	86301637	rs193149448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2p11.2		rs193149448-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1243	chr2	86341327	86341328	rs10184246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2p11.2		rs10184246-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1243	chr2	86360572	86360573	rs2241437	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	2p11.2	PTCD3	rs2241437-C	0.016	3E-6				Affymetrix [316934]	N
1243	chr2	86368803	86368804	rs3731818	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p11.2	PTCD3	rs3731818-G		4E-9		0.24	unit increase	Affymetrix [at least 2696785] (imputed)	N
1243	chr2	86368803	86368804	rs3731818	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p11.2	PTCD3	rs3731818-G		4E-6		0.127	unit increase	Affymetrix [at least 2696785] (imputed)	N
1243	chr2	86368803	86368804	rs3731818	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2p11.2	PTCD3	rs3731818-G		3E-6		0.117	unit increase	Affymetrix [at least 2696785] (imputed)	N
1244	chr2	86427820	86427821	rs2059352	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2p11.2	MRPL35	rs2059352-A	0.333	7E-11		0.2359	[0.16-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
1244	chr2	86438145	86438146	rs2241432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2p11.2		rs2241432-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1244	chr2	86464103	86464104	rs10206710	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	2p11.2		rs10206710-A	NR	3E-6		0.7834		Illumina [7574753] (imputed)	N
1244	chr2	86466548	86466549	rs13017143	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2p11.2	NR	rs13017143-C	0.399718	3E-10		0.011788	[0.0081-0.0155] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1244	chr2	86472113	86472114	rs35160687	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p11.2	REEP1, MRPL35, IMMT, MIR4779	rs35160687-T	NR	5E-6	(sleep onset)	0.1859	[0.11-0.27] unit decrease	Affymetrix [7141204] (imputed)	N
1245	chr2	86562901	86562902	rs4430958	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2p11.2	NR	rs4430958-?	NR	7E-6		0.0078346	[0.0044-0.0113] unit increase	Affymetrix [805426] (imputed)	N
1245	chr2	86594486	86594487	rs72926475	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2p11.2	REEP1	rs72926475-G	0.877	2E-11		1.07	[1.05-1.09]	Illumina [34740186] (imputed)	N
1245	chr2	86594486	86594487	rs72926475	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p11.2	REEP1, KDM3A	rs72926475-G	0.87	4E-11	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1245	chr2	86594486	86594487	rs72926475	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2p11.2	REEP1, KDM3A	rs72926475-G	0.87	3E-10		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1246	chr2	86639426	86639427	rs2367237	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2p11.2		rs2367237-T	0.575	2E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1246	chr2	86668821	86668822	rs111226991	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2p11.2	KDM3A	rs111226991-A	0.14	6E-6	(Turkish ancestry)	0.18	[0.1-0.26] unit increase	Illumina [~ 8300000] (imputed)	N
1246	chr2	86687087	86687088	rs17027263	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	2p11.2	KDM3A	rs17027263-C	0.1172	2E-6		1.4430014	[1.24-1.68]	Illumina [7521072] (imputed)	N
1246	chr2	86704879	86704880	rs72930400	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	VPS24	rs72930400-C	0.8496875	9E-7	(VPS24, 12508_9_3)	0.1672649	[0.1-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1246	chr2	86707503	86707504	rs4832290	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2p11.2	NR	rs4832290-C	0.7645	4E-8		0.0267	[0.017-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1246	chr2	86725368	86725369	rs56875109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHMP3	5,361 Icelandic ancestry individuals	NA	2p11.2		rs56875109-G	0.1497	2E-12		0.175499	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1246	chr2	86738323	86738324	rs11127043	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2p11.2	NR	rs11127043-T	NR	8E-9		5.775	z score increase	Affymetrix [10847151] (imputed)	N
1246	chr2	86744229	86744230	rs72932350	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2p11.2	NR	rs72932350-C	0.153754524814622	2E-8		0.0071744244	[0.0047-0.0097] unit increase	NR [NR]	N
1246	chr2	86744229	86744230	rs72932350	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2p11.2	NR	rs72932350-C	0.153754524814622	9E-9		0.011878662	[0.0078-0.0159] unit increase	NR [NR]	N
1246	chr2	86744229	86744230	rs72932350	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2p11.2	NR	rs72932350-C	0.153754524814622	1E-8		0.0075828964	[0.005-0.0102] unit increase	NR [NR]	N
1246	chr2	86744229	86744230	rs72932350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2p11.2		rs72932350-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1246	chr2	86764003	86764004	rs4832298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2p11.2	NR	rs4832298-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
1246	chr2	86764003	86764004	rs4832298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2p11.2		rs4832298-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1247	chr2	86776234	86776235	rs181394970	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2p11.2	CHMP3, RNF103-CHMP3	rs181394970-T	0.14	4E-6	(Turkish ancestry)	0.19	[0.11-0.27] unit increase	Illumina [~ 8300000] (imputed)	N
1247	chr2	86776389	86776390	rs181876504	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p11.2	CHMP3	rs181876504-A	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1247	chr2	86776389	86776390	rs181876504	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2p11.2	CHMP3	rs181876504-A	NR	8E-6				Illumina [up to 11995908] (imputed)	N
1247	chr2	86793197	86793198	rs78260322	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2p11.2	NR	rs78260322-G	NR	2E-8		0.02154	[0.014-0.029] unit increase	Affymetrix [10847151] (imputed)	N
1247	chr2	86796961	86796962	rs56211578	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2p11.2		rs56211578-?	NR	1E-8		0.0235	unit decrease	NR [NR]	N
1247	chr2	86803596	86803596	rs113655489	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2p11.2		rs113655489-AAAAC	NR	3E-11		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1247	chr2	86806355	86806356	rs10209325	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2p11.2	NA	rs10209325-T	0.6213	1E-14		0.0151	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1247	chr2	86812548	86812549	rs12714199	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2p11.2	NA	rs12714199-T	0.6146	3E-16		0.0141	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1247	chr2	86812548	86812549	rs12714199	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2p11.2	NA	rs12714199-T	0.6146	3E-16		0.0141	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1247	chr2	86819127	86819128	rs7585722	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	2p11.2	NR	rs7585722-C	0.1542	5E-13		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
1247	chr2	86824180	86824181	rs12328637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p11.2		rs12328637-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1247	chr2	86831050	86831051	rs61760874	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	2p11.2		rs61760874-?	NR	2E-8		0.0572038	[0.035-0.079] unit decrease	NR [9800000] (imputed)	N
1247	chr2	86835964	86835965	rs62147239	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2p11.2	RNF103	rs62147239-T	0.5073	1E-8		0.013472468	[0.0088-0.0181] unit decrease	Affymetrix [11515109] (imputed)	N
1247	chr2	86841068	86841069	rs745109	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2p11.2	NR	rs745109-?	NR	8E-7		0.155	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1247	chr2	86850021	86850022	rs396354	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2p11.2	CHMP3	rs396354-T	0.284406	8E-12		0.0103984	[0.0074-0.0134] unit increase	Affymetrix [12370749]	N
1247	chr2	86855976	86855977	rs308911	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2p11.2	RNF103-CHMP3	rs308911-A	0.279	1E-6		0.0369	[0.022-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1247	chr2	86860630	86860631	rs114532231	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2p11.2	intergenic	rs114532231-T	0.008	2E-6		0.684	[0.4-0.96] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1248	chr2	86902814	86902815	rs7425154	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs7425154-T	0.10086	2E-9		0.277	[0.19-0.37] unit decrease	Illumina [17954496] (imputed)	N
1248	chr2	86974317	86974318	rs12997796	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2p11.2	NR	rs12997796-A	NR	2E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
1248	chr2	86982503	86982504	rs13004867	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs13004867-G	0.1174	6E-32		0.4974	[0.42-0.58] unit decrease	Illumina [17954496] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2p11.2		rs6711700-A	NR	3E-16		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2p11.2		rs6711700-A	NR	6E-17		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2p11.2		rs6711700-G	0.329	2E-15		0.09	[-0.12--0.07] % decrease	Affymetrix [NR] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs6711700-A	0.679561	4E-36				Affymetrix, Illumina [24246363] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs6711700-A	0.682887	8E-31				Affymetrix, Illumina [20825802] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2p11.2	NR	rs6711700-A	0.668772	2E-28		0.022611	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1248	chr2	86987986	86987987	rs6711700	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2p11.2		rs6711700-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1248	chr2	86989961	86989962	rs4832312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2p11.2	RMND5A	rs4832312-C	0.686496	2E-21		0.022587279	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86989961	86989962	rs4832312	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2p11.2	RMND5A	rs4832312-C	0.6868	3E-12		0.02719357	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	86989961	86989962	rs4832312	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2p11.2	RMND5A	rs4832312-C	0.6867	9E-15		0.02961921	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	86989961	86989962	rs4832312	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2p11.2	RMND5A	rs4832312-C	0.6868	4E-10		0.02390232	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	86992337	86992337	rs3840984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2p11.2	RMND5A	rs3840984-TAA	0.687039	7E-29		0.026884355	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86992337	86992337	rs3840984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2p11.2	RMND5A	rs3840984-TAA	0.68704	2E-25		0.025119381	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86992337	86992337	rs3840984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2p11.2	RMND5A	rs3840984-TAA	0.687025	2E-14		0.018491186	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86992337	86992337	rs3840984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2p11.2	RMND5A	rs3840984-TAA	0.687056	1E-29		0.027140435	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86992337	86992337	rs3840984	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2p11.2	RMND5A	rs3840984-TAA	0.68705	6E-28		0.026273444	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	86993769	86993770	rs6706606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2p11.2	NR	rs6706606-G	0.684885	2E-33		0.023595	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1248	chr2	87002228	87002229	rs1193	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2p11.2	RMND5A	rs1193-T	0.6849	1E-9		0.02344567	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	87002228	87002229	rs1193	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2p11.2	RMND5A	rs1193-T	0.6849	5E-15		0.03043885	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	87002228	87002229	rs1193	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2p11.2	RMND5A	rs1193-T	0.6849	9E-15		0.03015736	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	87003027	87003028	rs1049457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2p11.2	RMND5A	rs1049457-T	0.685624	9E-25		0.0239465	[0.02-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1248	chr2	87006165	87006165	rs71378803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2p11.2	RMND5A	rs71378803-ATC	0.6746	3E-11		0.02585817	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1248	chr2	87009487	87009488	rs938487	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs938487-G	0.24763	3E-65		0.5168	[0.46-0.57] unit decrease	Illumina [17954496] (imputed)	N
1248	chr2	87009741	87009742	rs2367376	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %CD8dim T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs2367376-C	0.24626	3E-9		0.1716	[0.12-0.23] unit increase	Illumina [18357815] (imputed)	N
1248	chr2	87014111	87014112	rs111976570	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	CD8A	rs111976570-A	0.81015625	7E-73	(CD8A, 5992_50_3)	0.56726253	[0.51-0.63] unit decrease	Illumina [> 1000000] (imputed)	N
1248	chr2	87016505	87016506	rs3020726	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	2p11.2		rs3020726-G	0.1914	2E-122		0.544566	[0.5-0.59] unit increase	Illumina [7506463] (imputed)	N
1248	chr2	87016505	87016506	rs3020726	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on HLA DR+ CD8+ T cell	3,060 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs3020726-G	0.14076	4E-15		0.3008	[0.23-0.38] unit decrease	Illumina [18012714] (imputed)	N
1248	chr2	87016505	87016506	rs3020726	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Effector Memory CD8+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs3020726-G	0.13798	7E-14		0.2979	[0.22-0.38] unit decrease	Illumina [17945888] (imputed)	N
1248	chr2	87016505	87016506	rs3020726	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs3020726-G	0.13808	2E-26		0.4218	[0.34-0.5] unit decrease	Illumina [17945467] (imputed)	N
1248	chr2	87016505	87016506	rs3020726	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs3020726-G	0.14077	6E-43		0.5196	[0.45-0.59] unit decrease	Illumina [18030777] (imputed)	N
1248	chr2	87019682	87019683	rs7569868	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs7569868-T	0.18946	2E-14		0.2327	[0.17-0.29] unit increase	Illumina [18430788] (imputed)	N
1248	chr2	87019682	87019683	rs7569868	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs7569868-T	0.18946	2E-15		0.246	[0.19-0.31] unit increase	Illumina [18430788] (imputed)	N
1248	chr2	87019682	87019683	rs7569868	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs7569868-T	0.18946	3E-12		0.2197	[0.16-0.28] unit increase	Illumina [18430788] (imputed)	N
1248	chr2	87019682	87019683	rs7569868	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T %T cell	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs7569868-T	0.18946	6E-13		0.2272	[0.17-0.29] unit increase	Illumina [18430788] (imputed)	N
1248	chr2	87021658	87021659	rs34546581	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs34546581-A	0.19238	5E-11		0.2019	[0.14-0.26] unit increase	Illumina [18349913] (imputed)	N
1248	chr2	87022758	87022759	rs34613828	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Natural Killer T	3,103 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs34613828-T	0.19367	1E-12		0.2358	[0.17-0.3] unit decrease	Illumina [18027570] (imputed)	N
1248	chr2	87022758	87022759	rs34613828	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- Natural Killer T Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs34613828-T	0.19518	5E-12		0.2127	[0.15-0.27] unit increase	Illumina [18427348] (imputed)	N
1248	chr2	87024877	87024879	rs35706509	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs35706509-C	0.1957	4E-31		0.3648	[0.3-0.43] unit decrease	Illumina [18427348] (imputed)	N
1248	chr2	87024877	87024879	rs35706509	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs35706509-C	0.19499	1E-36		0.3868	[0.33-0.45] unit decrease	Illumina [18430788] (imputed)	N
1248	chr2	87024877	87024879	rs35706509	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs35706509-C	0.19499	3E-36		0.3858	[0.33-0.45] unit decrease	Illumina [18430788] (imputed)	N
1248	chr2	87030420	87030421	rs35626322	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on naive CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs35626322-T	0.19433	3E-46		0.4834	[0.42-0.55] unit decrease	Illumina [17945511] (imputed)	N
1248	chr2	87031213	87031214	rs12623395	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %lymphocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs12623395-C	0.54826	1E-9		0.1774	[0.12-0.23] unit decrease	Illumina [18430788] (imputed)	N
1249	chr2	87035075	87035076	rs6755452	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Terminally Differentiated CD4-CD8- T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6755452-G	0.18854	5E-9		0.1903	[0.13-0.25] unit increase	Illumina [18349913] (imputed)	N
1249	chr2	87035075	87035076	rs6755452	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4-CD8- T cell Absolute Count	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6755452-G	0.19236	7E-13		0.2134	[0.16-0.27] unit increase	Illumina [18427348] (imputed)	N
1249	chr2	87035075	87035076	rs6755452	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6755452-G	0.18885	5E-11		0.2159	[0.15-0.28] unit increase	Illumina [18357815] (imputed)	N
1249	chr2	87042824	87042825	rs35555413	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs35555413-C	0.05873	1E-10		0.375	[0.26-0.49] unit decrease	Illumina [17954496] (imputed)	N
1249	chr2	87044315	87044316	rs6547705	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	2p11.2	CD8B	rs6547705-?	0.23	1E-8	(controlling for rs7571971)	1.28	[1.18-1.40]	Illumina [531451]	N
1249	chr2	87047144	87047145	rs6710361	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4-CD8- T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6710361-A	0.19853	5E-9		0.177	[0.12-0.24] unit increase	Illumina [18332267] (imputed)	N
1249	chr2	87047144	87047145	rs6710361	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD4-CD8- T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6710361-A	0.19909	1E-9		0.1921	[0.13-0.25] unit increase	Illumina [18340221] (imputed)	N
1249	chr2	87052471	87052472	rs62146083	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD8A	5,365 Icelandic ancestry individuals	NA	2p11.2		rs62146083-T	0.05711	1E-24		0.416594	[0.34-0.5] unit decrease	Illumina [7506463] (imputed)	N
1249	chr2	87055980	87055981	rs72847706	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD39+ CD8+ T cell	2,915 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs72847706-C	0.22765	2E-15		0.2551	[0.19-0.32] unit decrease	Illumina [17951463] (imputed)	N
1249	chr2	87058579	87058580	rs4832054	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs4832054-A	0.24266	2E-10		0.1726	[0.12-0.23] unit increase	Illumina [18357815] (imputed)	N
1249	chr2	87061069	87061070	rs61038907	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28+ CD45RA+ CD8dim T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs61038907-A	0.26622	3E-8		0.1398	[0.091-0.189] unit increase	Illumina [18340221] (imputed)	N
1249	chr2	87062482	87062483	rs74767962	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2p11.2	NR	rs74767962-C	0.212	6E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1249	chr2	87066849	87066850	rs56063487	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD8+ T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs56063487-T	0.51866	4E-8		0.1499	[0.097-0.203] unit decrease	Illumina [18030777] (imputed)	N
1249	chr2	87074649	87074650	rs6547706	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on Central Memory CD8+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs6547706-G	0.5159400000000001	3E-8		0.1545	[0.1-0.209] unit decrease	Illumina [17945467] (imputed)	N
1249	chr2	87082678	87082679	rs11688534	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD8 on CD28+ CD45RA+ CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2p11.2		rs11688534-T	0.42217	3E-17		0.2375	[0.18-0.29] unit decrease	Illumina [17954496] (imputed)	N
1249	chr2	87102124	87102125	rs78207084	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2p11.2	NR	rs78207084-T	NR	1E-9		0.15	unit decrease	Illumina [NR]	N
1250	chr2	87271928	87271929	rs71226525	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	2p11.2	NR	rs71226525-G	0.537079	2E-6		0.097	[0.058-0.136] unit increase	NR [9260588] (imputed)	N
1251	chr2	87351725	87351726	rs192269070	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2p11.2	NR	rs192269070-A	NR	4E-6	(LME model)	1.2594	[0.73-1.79] unit increase	NR [NR] (imputed)	N
1251	chr2	87413895	87413896	rs2125974	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	2p11.2	NR	rs2125974-A	0.517368	8E-6		0.079	[0.044-0.114] unit increase	NR [9260588] (imputed)	N
1251	chr2	87414589	87414590	rs540268296	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2p11.2	NR	rs540268296-?	0.977711	8E-6		0.28	[0.16-0.4] unit decrease	NR [9260588] (imputed)	N
1252	chr2	87454591	87454592	rs71413012	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	2p11.2	NR	rs71413012-A		3E-7		0.134	[NR] unit decrease	Illumina [NR]	N
1252	chr2	87454591	87454592	rs71413012	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2p11.2	NR	rs71413012-G	NR	2E-88		0.515	unit decrease	Illumina [NR]	N
1252	chr2	87466778	87466779	rs796772920	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	2p11.2	NR	rs796772920-T		7E-15		0.212	[NR] unit increase	Illumina [NR]	N
1257	chr2	88166460	88166461	rs9636470	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	2p11.2	RGPD2	rs9636470-?	NR	3E-8				Illumina [805814]	N
1258	chr2	88315792	88315793	rs12714207	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	2p11.2	KRCC1	rs12714207-T	0.32	5E-7		0.03	[0.01-0.05] umol/l decrease in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
1259	chr2	88388537	88388538	rs2919856	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2p11.2	NR	rs2919856-T	0.545002280178174	2E-6	(IGP9)	0.1475	[0.087-0.208] unit increase	Illumina [~ 2500000] (imputed)	N
1259	chr2	88404546	88404547	rs2919869	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2p11.2	SMYD1, FABP1, MIR4780, KRCC1	rs2919869-G	NR	3E-8	(sleep offset)	0.2722	[0.18-0.37] unit increase	Affymetrix [7141204] (imputed)	N
1259	chr2	88415086	88415087	rs1441642	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	2p11.2	SMYD1	rs1441642-G	0.606	3E-6		1.1161333	1.066422-1.1681619	Affymetrix, Illumina [7701827] (imputed)	N
1259	chr2	88421492	88421493	rs74750933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2p11.2	NR	rs74750933-A	NR	3E-16		0.024	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1259	chr2	88421492	88421493	rs74750933	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2p11.2	NR	rs74750933-A	NR	1E-9		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1259	chr2	88423509	88423510	rs1545223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FABP1	5,366 Icelandic ancestry individuals	NA	2p11.2		rs1545223-G	0.323	9E-40		0.26621	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
1259	chr2	88423509	88423510	rs1545223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2p11.2		rs1545223-G	NR	4E-8		0.0118	[0.0075-0.0161] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1259	chr2	88423509	88423510	rs1545223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2p11.2		rs1545223-G	NR	4E-11		0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1259	chr2	88423509	88423510	rs1545223	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	FABP1	rs1545223-A	0.68078125	5E-21	(FABP1, 11516_7_3)	0.25031817	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
1259	chr2	88424065	88424066	rs2241883	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2p11.2	FABP1	rs2241883-T	0.69	4E-9		5.88	z-score increase	Affymetrix [4312306] (imputed)	N
1259	chr2	88424065	88424066	rs2241883	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p11.2	FABP1	rs2241883-C	0.303	2E-12	(Fatty acid-binding protein, liver, FABP1.11516.7.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1259	chr2	88428570	88428571	rs2919872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2p11.2		rs2919872-T	NR	3E-17		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1259	chr2	88428570	88428571	rs2919872	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2p11.2	FABP1	rs2919872-C	0.55918	1E-26		0.00250216	[0.002-0.003] unit increase	Affymetrix [13995440] (imputed)	N
1259	chr2	88428570	88428571	rs2919872	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2p11.2	FABP1, THNSL2	rs2919872-C	0.56	3E-17		8.44	z-score increase	Affymetrix [4311822] (imputed)	N
1259	chr2	88428833	88428834	rs2970901	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2p11.2	NR	rs2970901-G	0.554529	2E-10		0.0122648	[0.0085-0.016] unit decrease	NR [NR]	N
1259	chr2	88437167	88437168	rs7420937	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 1 or 2)	330 European ancestry cases, 5,199 European ancestry controls	NA	2p11.2		rs7420937-C	0.1	6E-6		1.68		Illumina [10258281] (imputed)	N
1259	chr2	88438049	88438050	rs4246598	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2p11.2	FABP1	rs4246598-A	0.46	5E-10		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1260	chr2	88500645	88500646	rs72943235	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	2p11.2	FABP1	rs72943235-A	0.012987	8E-8		2.37522	[1.54-3.21] unit increase	NR [7263501] (imputed)	N
1260	chr2	88518439	88518440	rs7589728	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	2p11.2	THNSL2	rs7589728-?		5E-6				Illumina [5970354] (imputed)	N
1260	chr2	88527413	88527414	rs12995491	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	2p11.2	MRPL45P1, THINSL2	rs12995491-?	NR	2E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1260	chr2	88546357	88546358	rs79281630	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p11.2		rs79281630-?	NR	9E-15		0.862799	[0.83-0.9]	NR [685523]	N
1260	chr2	88554350	88554351	rs6707137	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2p11.2	THNSL2	rs6707137-A	0.0618645	5E-21		0.2327403	[0.18-0.28] unit decrease	Affymetrix [7260263] (imputed)	N
1260	chr2	88554350	88554351	rs6707137	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2p11.2	RNYes4P15	rs6707137-G	0.936588	6E-22		1.19	[1.15-1.23]	Affymetrix [7600000] (imputed)	N
1260	chr2	88554350	88554351	rs6707137	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2p11.2	RNY4P15	rs6707137-G	0.942239	3E-22		1.2048193	[1.15-1.25]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1260	chr2	88554350	88554351	rs6707137	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2p11.2	THNSL2	rs6707137-A	0.06251	6E-15		1.129	NR	Affymetrix [9154080] (imputed)	N
1260	chr2	88563694	88563696	rs199818919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2p11.2		rs199818919-C	NR	3E-16		0.1667	[0.13-0.21] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1260	chr2	88578603	88578604	rs56165474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2p11.2		rs56165474-?	NR	3E-23				NR [~ 8900000] (imputed)	N
1260	chr2	88594572	88594573	rs6709352	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2p11.2	THNSL2	rs6709352-C	NR	8E-10		1.23	[1.15-1.31]	Affymetrix [5734850] (imputed)	N
1261	chr2	88659587	88659588	rs1659258	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2p11.2	THNSL2	rs1659258-A	0.92	2E-8	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1261	chr2	88694166	88694167	rs11684168	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2p11.2	FOXI3	rs11684168-T	0.83	3E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1261	chr2	88718937	88718938	rs17037649	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p11.2		rs17037649-?	NR	3E-10		0.870074	[0.83-0.91]	NR [685523]	N
1262	chr2	88738449	88738450	rs35822372	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis	1,944 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	151 European ancestry cases,  6,019 European ancestry controls, 150 European and other ancestry cases, 2,696 European and other ancestry controls	2p11.2	FOXI3	rs35822372-T	0.21	6E-15		1.44	[1.31-1.57]	Illumina [NR] (imputed)	N
1262	chr2	88853143	88853144	rs116632724	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p11.2		rs116632724-?	NR	3E-9		0.871345	[0.83-0.92]	NR [685523]	N
1263	chr2	88874890	88874891	rs1805165	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2p11.2		rs1805165-C	0.3	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
1263	chr2	88878132	88878133	rs7593335	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	2p11.2		rs7593335-A	NR	3E-10		0.0345	[0.024-0.045] unit increase	Affymetrix [6193476] (imputed)	N
1263	chr2	88880063	88880064	rs6739095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p11.2		rs6739095-A	NR	3E-54		0.0204	[0.018-0.023] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1263	chr2	88881647	88881648	rs11898161	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2p11.2	EIF2AK3	rs11898161-?	NR	1E-23		0.028731694	[0.023-0.034] unit decrease	Illumina [27896057] (imputed)	N
1263	chr2	88895350	88895351	rs7571971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2p11.2		rs7571971-C	0.589331	5E-22		0.0194991	[0.016-0.023] unit decrease	Illumina [13479295] (imputed)	N
1263	chr2	88895350	88895351	rs7571971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2p11.2		rs7571971-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1263	chr2	88895350	88895351	rs7571971	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	2p11.2	EIF2AK3	rs7571971-?	0.74	4E-13		1.33	[1.22-1.43]	Illumina [531451]	N
1263	chr2	88901731	88901732	rs11681299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2p11.2		rs11681299-T	NR	2E-8		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1263	chr2	88901731	88901732	rs11681299	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2p11.2	EIF2AK3	rs11681299-T	0.2835	6E-9		1.0239831		Affymetrix [11880941] (imputed)	N
1263	chr2	88901731	88901732	rs11681299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p11.2		rs11681299-?	NR	2E-68				NR [~ 8900000] (imputed)	N
1263	chr2	88913272	88913273	rs867529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2p11.2	EIF2AK3	rs867529-C	NR	3E-11		0.0226353	[0.016-0.029] unit increase	Affymetrix [323123] (imputed)	N
1263	chr2	88913272	88913273	rs867529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2p11.2	EIF2AK3	rs867529-C	0.2796	1E-18		0.0184	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1263	chr2	88913272	88913273	rs867529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	2p11.2	EIF2AK3	rs867529-C	0.28	2E-14		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1263	chr2	88913272	88913273	rs867529	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	2p11.2	EIF2AK3	rs867529-C	0.28	2E-7		0.01	[0.0041-0.0159] unit increase	Affymetrix [18391927] (imputed)	N
1263	chr2	88913272	88913273	rs867529	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2p11.2	EIF2AK3	rs867529-C	0.46	2E-14		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1263	chr2	88924621	88924622	rs11684404	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	2p11.2	NR	rs11684404-T	0.661	4E-9		5.868	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1263	chr2	88924621	88924622	rs11684404	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2p11.2	EIF2AK3	rs11684404-T	0.661	9E-25		0.032	[0.026-0.038] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1263	chr2	88924621	88924622	rs11684404	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2p11.2	EIF2AK3	rs11684404-T	0.67	1E-13		0.028	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1263	chr2	88933315	88933316	rs1606803	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2p11.2	NR	rs1606803-T	0.2871	3E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
1263	chr2	88941489	88941490	rs13003510	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2p11.2	AC062029.1	rs13003510-A	0.2934	8E-7		0.0349	[0.021-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1263	chr2	88953587	88953587	rs550719507	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2p11.2	AC062029.1	rs550719507-CT	NR	1E-8		0.0178644	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1263	chr2	88993290	88993291	rs34965331	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2p11.2	Intergenic	rs34965331-?	NR	2E-6		1.746	[NR]	Affymetrix [492217] (imputed)	N
1264	chr2	89040513	89040514	rs79140613	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2p11.2	NR	rs79140613-A	0.05575	3E-8	(DDB1)	0.09941	NR unit increase	Illumina [1671387] (imputed)	N
1264	chr2	89072730	89072731	rs335120	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Anterior thalamic nuclei volume	30,114 white British ancestry individuals			ANKRD36BP2	rs335120-A	0.2746	2E-10		0.0596953	[0.041-0.078] unit decrease	Affymetrix [8165723] (imputed)	N
1264	chr2	89093780	89093781	rs335123	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2p11.2	ANKRD36BP2	rs335123-T	NR	2E-6		1.0585	NR	Affymetrix, Illumina [8278136] (imputed)	N
1264	chr2	89124237	89124238	rs1843217	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2p11.2		rs1843217-?	NR	3E-11		0.884011	[0.85-0.92]	NR [685523]	N
1264	chr2	89126215	89126216	rs6707271	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2p11.2	RPIA	rs6707271-C	0.599375	2E-6	(RPIA, 12333_87_3)	0.12214014	[0.072-0.172] unit decrease	Illumina [> 1000000] (imputed)	N
1265	chr2	89138781	89138782	rs146133332	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC244205.1	rs146133332-?	NR	4E-9		1.81077	[NR] unit increase	Affymetrix [NR] (imputed)	N
1266	chr2	89266415	89266416	rs145548733	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2p11.2	IGKV1-6	rs145548733-A	0.085	5E-14	(Calcipressin-1, RCAN1.13465.5.3)	0.34	[0.26-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
1270	chr2	89864904	89864905	rs547408441	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p11.2	NR	rs547408441-A	0.04357	9E-12		0.004401	[0.0031-0.0057] unit decrease	Affymetrix [NR] (imputed)	N
1271	chr2	89956460	89956461	rs2386325	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	2p11.2	IGKV1D-33, MIR4436A	rs2386325-?	NR	3E-7		0.8	0.71-0.88	Illumina [7605010] (imputed)	N
1271	chr2	89987950	89987951	rs150090623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2p11.2		rs150090623-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1271	chr2	89997656	89997657	rs12466317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.2	NR	rs12466317-A	0.149785	6E-14				Affymetrix, Illumina [19872809] (imputed)	N
1271	chr2	89997656	89997657	rs12466317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p11.2	NR	rs12466317-A	0.152327	5E-15		0.027617	[0.021-0.035] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1272	chr2	90106386	90106387	rs2162488	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2p11.2	NR	rs2162488-T	0.8239	3E-12		0.1078	[0.078-0.138] unit decrease	Illumina [~ 10600000] (imputed)	N
1272	chr2	90112744	90112745	rs17620337	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NFKB1	5,365 Icelandic ancestry individuals	NA	2p11.2		rs17620337-T	0.07894	3E-38		0.43525	[0.37-0.5] unit decrease	Illumina [7506463] (imputed)	N
1272	chr2	90128715	90128716	rs116663580	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2p11.2		rs116663580-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1284	chr2	91697807	91697808	rs191753171	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	2p11.2	NR	rs191753171-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1285	chr2	91767924	91767925	rs2599144	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		2p11.2	AC018696.4	rs2599144-T	0.644712	2E-6		0.603187	[0.36-0.85] unit increase	Illumina [640625] (imputed)	N
1286	chr2	91928754	91928755	rs111712978	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2p11.2	NR	rs111712978-A	0.04736	2E-11		0.004198	[0.0029-0.0054] unit decrease	Affymetrix [NR] (imputed)	N
1288	chr2	92170777	92170778	rs144562456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2p11.1	NR	rs144562456-C	0.897886	9E-10				Affymetrix, Illumina [19872809] (imputed)	N
1288	chr2	92170777	92170778	rs144562456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2p11.1	NR	rs144562456-C	0.896505	4E-12		0.027913	[0.02-0.036] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1288	chr2	92195344	92195345	rs563190449	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2p11.1	NR	rs563190449-T	0.9746	1E-7		0.301	[0.19-0.41] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1288	chr2	92195344	92195345	rs563190449	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals	6,500 African American individuals	2p11.1	NR	rs563190449-T	0.9746	1E-7		0.2991	[0.19-0.41] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1289	chr2	92305672	92305673	rs200027753	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2p11.1		rs200027753-A	NR	9E-11		0.0443	[0.031-0.058] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1312	chr2	95336089	95336090	rs200267038	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q11.1	NONE, FAM95A	rs200267038-?	NR	8E-11		0.0985138	[0.069-0.128] unit decrease	Illumina [27896057] (imputed)	N
1314	chr2	95560504	95560505	rs187989831	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA		TEKT4	rs187989831-C	0.005	8E-10		3.59353E-4	[0.0000287389-0.00449338}	Illumina [1465938] (imputed)	N
1315	chr2	95703861	95703862	rs144581168	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2q11.1		rs144581168-?	NR	2E-6		1.7091684	[1.01-2.4] unit decrease	Illumina [9842460] (imputed)	N
1317	chr2	96000942	96000943	rs2042477	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2q11.1	KCNIP3	rs2042477-A	0.2422	1E-8		0.0657	[0.043-0.088] unit decrease	NR [7784415] (imputed)	N
1317	chr2	96059005	96059006	rs146700697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q11.1		rs146700697-A	0.03147	6E-9		0.0372536	[0.025-0.05] unit decrease	Illumina [13479295] (imputed)	N
1320	chr2	96353841	96353842	rs78123903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.1		rs78123903-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1320	chr2	96367615	96367616	rs11688742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.1	NR	rs11688742-T	NR	5E-13		0.0222	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1320	chr2	96397340	96397341	rs11688555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q11.1		rs11688555-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1321	chr2	96491455	96491456	rs62155750	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	2q11.1	NR	rs62155750-?	NR	5E-34				NR [up to 7000000]	N
1322	chr2	96657574	96657575	rs62155511	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q11.1	DKFZp667P0924	rs62155511-G	0.6164	2E-9		0.1526	[0.1-0.2] mmHg increase	Affymetrix [NR] (imputed)	N
1322	chr2	96673523	96673524	rs2692950	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q11.2		rs2692950-T	0.61	2E-14				Affymetrix [10369434] (imputed)	N
1322	chr2	96674115	96674116	rs2692947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q11.2	FAHD2CP, RN7SL210P	rs2692947-C	0.4421	2E-18		0.03162585	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1322	chr2	96674115	96674116	rs2692947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q11.2	FAHD2CP, RN7SL210P	rs2692947-C	0.4421	4E-20		0.03320726	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1322	chr2	96675165	96675166	rs2579519	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q11.2	GPAT2, FAHD2CP	rs2579519-T	0.63	5E-12		0.197	[0.14-0.26] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1323	chr2	96774198	96774199	rs13019188	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q11.2	ADRA2B	rs13019188-G	0.621959	2E-13		0.0168168	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1323	chr2	96778665	96778665	rs11464083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q11.2		rs11464083-TA	NR	6E-14		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1323	chr2	96780988	96780988	rs28365031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q11.2		rs28365031-CTCCTCCTCT	NR	8E-14		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1323	chr2	96841792	96841793	rs11886999	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	2q11.2	STARD7	rs11886999-T	NR	8E-6	(Continuous Variable)	0.04	[0.02-0.06] ug/L increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1323	chr2	96855240	96855241	rs4907230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs4907230-A	0.300807	3E-13				Affymetrix, Illumina [23467995] (imputed)	N
1323	chr2	96855240	96855241	rs4907230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q11.2	NR	rs4907230-A	0.323539	7E-15		0.015584	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1324	chr2	96880146	96880147	rs58448550	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q11.2	NR	rs58448550-T	0.3275	4E-9				NR [9056863] (imputed)	N
1324	chr2	96913917	96913918	rs79046683	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	2q11.2	TMEM127	rs79046683-T	0.0048	3E-8		2.34	[1.73-3.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1324	chr2	96925268	96925269	rs4907307	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs4907307-A	0.3596	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1324	chr2	96946540	96946541	rs186291940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs186291940-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1324	chr2	96963683	96963684	rs772178	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2q11.2	NCAPH	rs772178-A	0.64	4E-8		0.208	[0.13-0.28] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1324	chr2	96981368	96981369	rs4435501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q11.2		rs4435501-C	NR	4E-8		0.0209	[0.013-0.028] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1324	chr2	96981368	96981369	rs4435501	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	2q11.2	ITPRIPL1	rs4435501-A	NR	4E-6		0.13	[0.071-0.189] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1325	chr2	97021663	97021664	rs772154	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 21)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q11.2		rs772154-T	0.344350282	1E-8				Illumina [7417619] (imputed)	N
1325	chr2	97043280	97043280	rs561539268	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q11.2	NCAPH	rs561539268-GT	0.342525	9E-12		0.016042823	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr2	97046998	97046999	rs1081707	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q11.2	intergenic	rs1081707-A	0.4064	3E-8		0.1547	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1325	chr2	97066496	97066497	rs74583310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs74583310-C	NR	9E-10		0.0223	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1325	chr2	97068860	97068860	rs34063378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q11.2		rs34063378-CT	0.626505	5E-10		0.017474798	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr2	97068860	97068860	rs34063378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q11.2		rs34063378-CT	0.626497	7E-12		0.01919041	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1325	chr2	97069878	97069879	rs584811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q11.2		rs584811-A	NR	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1326	chr2	97140141	97140142	rs10209780	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q11.2		rs10209780-T	0.36	4E-32				Affymetrix [10369434] (imputed)	N
1326	chr2	97155207	97155208	rs11164095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q11.2	NR	rs11164095-T	0.279327	4E-10		0.00565478	[0.0038-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
1326	chr2	97155207	97155208	rs11164095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q11.2	NR	rs11164095-T	0.279327	2E-9		0.0056803	[0.0036-0.0077] unit increase	Affymetrix [16582965] (imputed)	N
1326	chr2	97176633	97176634	rs2579503	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals		NEURL3	rs2579503-T	0.3203	2E-8		0.1174	[0.076-0.158] mmHg decrease	Affymetrix [NR] (imputed)	N
1326	chr2	97179827	97179828	rs2464914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q11.2		rs2464914-G	NR	3E-57		0.0292	[0.026-0.033] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1326	chr2	97187604	97187605	rs4907236	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q11.2		rs4907236-C	0.719	3E-9				Affymetrix [10369434] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	2q11.2		rs2579500-A	0.6706	4E-6		0.0583	[0.033-0.083] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q11.2	RP11-363D14.1, ARID5A	rs2579500-A	0.389723	2E-44		0.037329294	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q11.2	RP11-363D14.1, ARID5A	rs2579500-A	0.389712	2E-43		0.03694266	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs2579500-?	NR	1E-110				NR [~ 8900000] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q11.2	RP11-363D14.1, ARID5A	rs2579500-A	0.3889	7E-39		0.04756234	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97201681	97201682	rs2579500	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q11.2	RP11-363D14.1, ARID5A	rs2579500-A	0.3889	8E-39		0.04756093	[0.04-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97201872	97201872	rs36005340	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q11.2		rs36005340-?	NR	9E-11		0.0154036	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1326	chr2	97207320	97207321	rs2579506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs2579506-A	0.386556	4E-118				Affymetrix, Illumina [19872809] (imputed)	N
1326	chr2	97207320	97207321	rs2579506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q11.2	NR	rs2579506-A	0.386176	1E-120		0.047465	[0.043-0.051] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1326	chr2	97228038	97228039	rs4907240	21184583	Zlojutro M	2010-11-02	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	2q11.2	ARID5A	rs4907240-A	0.23	4E-6		0.254	[0.14-0.36] uV increase	Illumina [951071]	N
1326	chr2	97230073	97230074	rs2708977	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q11.2	intergenic	rs2708977-A	0.6384	8E-29		0.04144036	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97230073	97230074	rs2708977	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q11.2	intergenic	rs2708977-A	0.6384	5E-34		0.04526133	[0.038-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97231618	97231622	rs72079386	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q11.2	intergenic	rs72079386-A	0.3644	7E-32		0.04354452	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97236652	97236653	rs36058533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q11.2	intergenic	rs36058533-A	0.3732	6E-32		0.04365629	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97236652	97236653	rs36058533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q11.2	intergenic	rs36058533-A	0.3732	1E-36		0.04680745	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1326	chr2	97236652	97236653	rs36058533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q11.2	intergenic	rs36058533-A	0.3732	2E-37		0.04736439	[0.04-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1327	chr2	97283675	97283676	rs183743021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q11.2		rs183743021-C	NR	8E-25		0.0569	[0.046-0.068] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1327	chr2	97319533	97319534	rs17685766	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q11.2	FER1L5	rs17685766-C	NR	7E-9		0.0175668	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q11.2	FER1L5	rs7599598-A	0.58	1E-11	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q11.2	FER1L5	rs7599598-A	0.57	3E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2q11.2	FER1L5	rs7599598-?	NR	2E-11	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	2q11.2	FER1L5	rs7599598-?	NR	2E-11				Affymetrix, Illumina [18800000] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q11.2	FER1L5	rs7599598-?	NR	4E-13	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q11.2	FER1L5	rs7599598-?	NR	2E-12				Affymetrix, Illumina [18800000] (imputed)	N
1327	chr2	97351839	97351840	rs7599598	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q11.2	FER1L5	rs7599598-A		1E-7		0.128	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1327	chr2	97359235	97359236	rs62156207	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs62156207-A	NR	1E-18		0.0439	[0.034-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1327	chr2	97368669	97368670	rs34409923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs34409923-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1327	chr2	97380228	97380229	rs56361249	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	2q11.2	FER1L5, LMAN2L, CNNM4	rs56361249-?	NR	3E-10		1.12		Affymetrix, Illumina [8837380] (imputed)	N
1328	chr2	97390952	97390953	rs72809827	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LMAN2L	5,366 Icelandic ancestry individuals	NA	2q11.2		rs72809827-T	0.3236	9E-22		0.188617	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1328	chr2	97392706	97392707	rs72941253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q11.2		rs72941253-G	NR	3E-51		0.0382	[0.033-0.043] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1328	chr2	97405439	97405440	rs2271893	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q11.2	LMAN2L	rs2271893-G	0.67	2E-12	(LMAN2L, 8013_9_3)	0.18127555	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1328	chr2	97405439	97405440	rs2271893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q11.2	LMAN2L	rs2271893-A	0.323	4E-24	(VIP36-like protein, LMAN2L.8013.9.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1328	chr2	97405439	97405440	rs2271893	22182935	Chen DT	2011-12-20	Mol Psychiatry	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese ancestry cases, 1,000 Taiwanese ancestry controls	1,115 European ancestry cases, 2,728 European ancestry controls	2q11.2	LMAN2L	rs2271893-G	NR	2E-10				Affymetrix, Illumina [748555]	N
1328	chr2	97410948	97410949	rs6746896	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs6746896-?	NR	2E-9				NR [2625067]	N
1328	chr2	97410948	97410949	rs6746896	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls		LMAN2L, FER1L5, CNNM4	rs6746896-A	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1328	chr2	97412166	97412167	rs62156223	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	2q11.2	intergenic	rs62156223-T	0.94	5E-6		6.63	NR mg decrease	NR [NR] (imputed)	N
1328	chr2	97413487	97413488	rs2314398	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	2q11.2	NR	rs2314398-C	0.667	5E-9		1.07627	[1.05-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
1328	chr2	97413487	97413488	rs2314398	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	2q11.2	LMAN2L, FER1L5, CNNM4	rs2314398-?	NR	3E-6				Affymetrix [1769948] (imputed)	N
1328	chr2	97413487	97413488	rs2314398	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	2q11.2	intergenic	rs2314398-?	0.69	3E-6		1.17	[NR]	Affymetrix [1769948] (imputed)	N
1328	chr2	97416152	97416153	rs4619651	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	2q11.2	LMAN2L	rs4619651-G	0.67	5E-11		1.06833	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1328	chr2	97416152	97416153	rs4619651	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	2q11.2		rs4619651-?	NR	4E-8		0.0151	NR unit decrease	NR [6265453] (imputed)	N
1328	chr2	97416152	97416153	rs4619651	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2q11.2	NR	rs4619651-A	0.2972	3E-8		0.06437605	[0.042-0.087] unit decrease	NR [NR]	N
1328	chr2	97416152	97416153	rs4619651	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q11.2	NR	rs4619651-A	0.2972	5E-10		0.07221315	[0.049-0.095] unit decrease	NR [NR]	N
1328	chr2	97416152	97416153	rs4619651	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q11.2	NR	rs4619651-?		3E-8				NR [8377093]	N
1328	chr2	97416152	97416153	rs4619651	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q11.2	NR	rs4619651-?		1E-9				NR [520857]	N
1328	chr2	97416152	97416153	rs4619651	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q11.2	LMAN2L, CNNM4	rs4619651-?		1E-9				NR [6786993] (imputed)	N
1328	chr2	97444432	97444432	rs139649176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q11.2		rs139649176-TC	0.276539	3E-17		0.0189071	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
1328	chr2	97454649	97454650	rs6576983	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q11.2	NR	rs6576983-G	0.3919	2E-53		0.003502	[0.003-0.004] unit decrease	Affymetrix [NR] (imputed)	N
1328	chr2	97482000	97482001	rs186606513	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2q11.2	CNNM3	rs186606513-G	0.980197	5E-6		0.059929	[0.034-0.086] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1328	chr2	97482000	97482001	rs186606513	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q11.2	CNNM3	rs186606513-G	0.977952	3E-9		0.060699	[0.041-0.081] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1328	chr2	97484813	97484814	rs4907251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2q11.2		rs4907251-T	0.652064	5E-8		0.0209382	[0.013-0.028] unit increase	Illumina [13476266] (imputed)	N
1328	chr2	97489653	97489654	rs112826173	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q11.2	SEMA4C	rs112826173-A	0.98078125	4E-15	(SEMA4C, 7923_41_3)	0.71275914	[0.54-0.89] unit increase	Illumina [> 1000000] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs78381888-G	NR	9E-21		0.0308	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	2q11.2	NR	rs78381888-A	0.815	5E-7		1.12165		NR [9372253] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q11.2	Intergenic	rs78381888-A	0.8272	3E-12	(MTAG)	0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q11.2	Intergenic	rs78381888-A	0.8272	7E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs78381888-A	0.8274	1E-11	(MTAG)	0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1328	chr2	97500774	97500775	rs78381888	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q11.2	NR	rs78381888-A	NR	2E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
1328	chr2	97500799	97500800	rs9948	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q11.2	CNNM3	rs9948-?	0.31	6E-6		4.9	[NR]	Affymetrix [512497]	N
1329	chr2	97523884	97523885	rs79460537	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q11.2	ANKRD39	rs79460537-?	NR	7E-18		0.04514136	[0.035-0.055] unit decrease	Illumina [27896057] (imputed)	N
1329	chr2	97526962	97526963	rs71427097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q11.2		rs71427097-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1329	chr2	97526962	97526963	rs71427097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q11.2		rs71427097-?	NR	5E-36				NR [~ 8900000] (imputed)	N
1329	chr2	97532848	97532849	rs62152866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs62152866-A	NR	2E-16		0.037	[0.028-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1329	chr2	97540652	97540653	rs72811637	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs72811637-A	NR	4E-9		0.0535	[0.036-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
1329	chr2	97548455	97548456	rs147426783	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q11.2	FAM178B	rs147426783-T	0.0035	4E-7		0.3787	[0.23-0.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1329	chr2	97548455	97548456	rs147426783	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q11.2	FAM178B	rs147426783-T	0.0035	4E-7		0.3787	[0.23-0.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1329	chr2	97564283	97564284	rs2314650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q11.2		rs2314650-A	NR	3E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1329	chr2	97566050	97566051	rs114707893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q11.2	NR	rs114707893-T	NR	2E-9		0.0493	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1329	chr2	97566050	97566051	rs114707893	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs114707893-T	NR	6E-13		0.0589	[0.043-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1329	chr2	97579506	97579507	rs7592101	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q11.2	NR	rs7592101-C	0.1188	1E-10				NR [9056863] (imputed)	N
1329	chr2	97607070	97607071	rs6728642	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	2q11.2	FAM178B	rs6728642-A		5E-8				NR [NR] (imputed)	N
1329	chr2	97607483	97607484	rs13006507	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs13006507-A	NR	7E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1330	chr2	97668944	97668945	rs78783493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q11.2		rs78783493-T	0.08	1E-12		7.09	z score increase	Affymetrix [9061022] (imputed)	N
1330	chr2	97668944	97668945	rs78783493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q11.2		rs78783493-T	0.08	1E-23		10.04	z score increase	Affymetrix [9061022] (imputed)	N
1330	chr2	97668944	97668945	rs78783493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q11.2		rs78783493-T	0.08	3E-11		6.67	z score increase	Affymetrix [9061022] (imputed)	N
1330	chr2	97668944	97668945	rs78783493	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs78783493-T	NR	2E-10		0.0283	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1330	chr2	97688615	97688616	rs560282083	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD4+ CD8dim T cell %leukocyte	3,668 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q11.2		rs560282083-T	0.03095	4E-8		0.4064	[0.26-0.55] unit decrease	Illumina [18430788] (imputed)	N
1330	chr2	97703417	97703418	rs115056730	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	2q11.2	NR	rs115056730-G		2E-6		0.6683	[0.39-0.95] SD units decrease	NR [10700000] (imputed)	N
1330	chr2	97711420	97711421	rs11695197	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q11.2	NR	rs11695197-A	0.1036	6E-13				NR [9056863] (imputed)	N
1331	chr2	97797679	97797680	rs13390019	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2q11.2	ANKRD36	rs13390019-T	0.87	2E-10		0.01	[0.0061-0.0139] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1331	chr2	97797679	97797680	rs13390019	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2q11.2	ANKRD36	rs13390019-T	0.867	8E-7		0.0075	[0.0046-0.0104] unit increase	Affymetrix [~ 7740000] (imputed)	N
1331	chr2	97881611	97881612	rs149026780	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	2q11.2	NR	rs149026780-C		6E-6		0.5653	[0.32-0.82] SD units increase	NR [10700000] (imputed)	N
1331	chr2	97886294	97886295	rs9631085	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q11.2	NR	rs9631085-A	NR	2E-6		1.13	[NR]	Illumina [7158791] (imputed)	N
1332	chr2	98018863	98018864	rs10199493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs10199493-A	0.2535	5E-9	(MTAG)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1332	chr2	98025799	98025800	rs146799849	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	2q11.2	NR	rs146799849-G		2E-6		0.6265	[0.37-0.89] SD units decrease	NR [10700000] (imputed)	N
1334	chr2	98181273	98181274	rs534806169	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LMAN2L	5,366 Icelandic ancestry individuals	NA	2q11.2		rs534806169-T	0.01043	1E-7		0.494022	[0.31-0.68] unit decrease	Illumina [7506463] (imputed)	N
1334	chr2	98242554	98242555	rs35751693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs35751693-T	0.0348	8E-10		0.0246	[0.017-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1334	chr2	98271574	98271575	rs72815640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs72815640-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q11.2	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs11692435-?		1E-10				NR [7428630] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q11.2	NR	rs11692435-A	0.087	5E-10	(average)	0.005775975	[0.004-0.0076] unit decrease	Affymetrix, Illumina [NR]	N
1334	chr2	98275353	98275354	rs11692435	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	2q11.2	NR	rs11692435-G	0.9	1E-8		1.12	[1.07-1.16]	Affymetrix, Illumina [> 10000000] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2q11.2	ACTR1B	rs11692435-A	0.084	4E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix [~ 7740000] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2q11.2	ACTR1B	rs11692435-A	0.0839	2E-10		0.025667628	[0.018-0.034] unit increase	Affymetrix [11514936] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q11.2	NR	rs11692435-A	0.0848	2E-12		0.0138007	[0.01-0.0176] unit increase	NR [9732723] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q11.2	NR	rs11692435-A	0.0848	4E-8		0.02505263	[0.016-0.034] unit increase	NR [~ 10000000] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q11.2	NR	rs11692435-A	0.0852	3E-15		0.0189977	[0.014-0.024] unit increase	NR [~ 9732723] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2q11.2	NR	rs11692435-A	0.0852	3E-11		0.017449895	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
1334	chr2	98275353	98275354	rs11692435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q11.2		rs11692435-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1335	chr2	98324380	98324381	rs12999616	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	2q11.2	Intergenic	rs12999616-?		7E-6		1.338	[NR]	Affymetrix [492217] (imputed)	N
1335	chr2	98329196	98329197	rs13034349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs13034349-T	0.4076	9E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q11.2	NR	rs11683207-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q11.2	Intergenic	rs11683207-T	0.8291	6E-18	(MTAG)	0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q11.2	Intergenic	rs11683207-T	0.8291	1E-16		0.0214	[0.016-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs11683207-T	0.8292	1E-18	(MTAG)	0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q11.2	Intergenic	rs11683207-T	0.8292	3E-10		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1335	chr2	98333289	98333290	rs11683207	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs11683207-T	0.823	1E-11	(MTAG)	0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1335	chr2	98333309	98333310	rs35065263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs35065263-A	NR	5E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1335	chr2	98333309	98333310	rs35065263	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs35065263-A	NR	5E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1335	chr2	98342322	98342323	rs34149969	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2q11.2		rs34149969-?	NR	5E-9				Illumina [1128286]	N
1335	chr2	98342700	98342701	rs72815665	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	2q11.2	NR	rs72815665-?	NR	4E-6		0.0316	[0.018-0.045] unit increase	Illumina [~ 7800000] (imputed)	N
1335	chr2	98345085	98345086	rs6714710	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	2q11.2	Intergenic	rs6714710-?	NR	1E-6		1.48999	[1.26062-1.7611]	Illumina [~ 5900000] (imputed)	N
1335	chr2	98357162	98357163	rs4851462	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q11.2	ZAP70	rs4851462-T	0.6262	6E-13		0.1138	[0.083-0.145] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1335	chr2	98364406	98364407	rs34635139	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q11.2		rs34635139-C	0.777	3E-13				Affymetrix [10369434] (imputed)	N
1335	chr2	98373005	98373006	rs5865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q11.2		rs5865-T	NR	3E-9		0.0544	[0.037-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1335	chr2	98373005	98373006	rs5865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q11.2	TMEM131	rs5865-T	0.664527	1E-15		0.018904764	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr2	98373005	98373006	rs5865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q11.2	TMEM131	rs5865-T	0.664524	2E-13		0.017455678	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr2	98373005	98373006	rs5865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q11.2	TMEM131	rs5865-T	0.664547	2E-10		0.01501892	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr2	98373005	98373006	rs5865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q11.2	TMEM131	rs5865-T	0.664539	2E-9		0.014063372	[0.0094-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr2	98373005	98373006	rs5865	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q11.2	TMEM131	rs5865-C	0.334138	5E-10		0.06017709	[0.041-0.079] unit increase	Affymetrix [7288503] (imputed)	N
1335	chr2	98373005	98373006	rs5865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q11.2		rs5865-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1335	chr2	98373005	98373006	rs5865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q11.2		rs5865-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1335	chr2	98391116	98391117	rs10191483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q11.2	TMEM131	rs10191483-A	0.218466	1E-9		0.016695753	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr2	98392301	98392302	rs17489259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q11.2	TMEM131	rs17489259-A	0.230958	1E-13		0.019589469	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1335	chr2	98430405	98430405	rs143238565	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs143238565-TA	NR	4E-10		0.0295	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1336	chr2	98472176	98472177	rs36041076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q11.2		rs36041076-C	NR	7E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1336	chr2	98538432	98538433	rs1578957	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q11.2	NR	rs1578957-?	NR	3E-8				Affymetrix [NR]	N
1336	chr2	98541873	98541874	rs76157199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q11.2	NR	rs76157199-G	NR	2E-9		0.0397	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1336	chr2	98541873	98541874	rs76157199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q11.2	NR	rs76157199-G	NR	3E-10		0.0419	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1336	chr2	98565742	98565743	rs35589428	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q11.2	TMEM131	rs35589428-C	0.234978	2E-14		0.020768879	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1337	chr2	98598991	98598992	rs147501248	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac Troponin-T levels	10,395 European ancestry individuals	NA	2q11.2	TMEM131, ZAP70	rs147501248-C		5E-7		0.277	[NR] unit increase	Illumina [24111857] (imputed)	N
1337	chr2	98599498	98599499	rs56397913	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q11.2	COX5B, ACTR1B, LOC728537, ZAP70, TMEM131	rs56397913-C	0.9054	2E-6		1.1094838		NR [9372253] (imputed)	N
1337	chr2	98613174	98613175	rs34469351	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q11.2	TMEM131	rs34469351-T	0.244183	6E-11		0.017556772	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1338	chr2	98701244	98701245	rs58029241	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	2q11.2	VWA3B	rs58029241-A	NR	2E-8	(TAG(50:1;0))	0.369	[0.24-0.5] unit increase	Illumina [~ 9300000] (imputed)	N
1338	chr2	98703658	98703659	rs10211067	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	2q11.2	VWA3B	rs10211067-T	0.423	5E-6		0.166	[NR] unit decrease	Illumina [625127]	N
1338	chr2	98803024	98803025	rs2122752	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	2q11.2	NR	rs2122752-C		1E-6				NR [525577]	N
1338	chr2	98816450	98816451	rs62154930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q11.2		rs62154930-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1339	chr2	98866774	98866775	rs6747410	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	2q11.2		rs6747410-?	NR	4E-6		0.432	[-2.50408-3.36808] unit increase	Affymetrix [6423076] (imputed)	N
1339	chr2	98886925	98886926	rs76399441	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		VWA3B	rs76399441-?	NR	3E-14		2.1304	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1339	chr2	98886925	98886926	rs76399441	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		VWA3B	rs76399441-?	NR	2E-13	(male)	2.40721	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1339	chr2	98896037	98896038	rs1394432	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2q11.2	VWA3B	rs1394432-C	0.323	1E-7	(Angiotensin II antagonists, plain [C09CA])	2.19		Illumina [16500000] (imputed)	N
1339	chr2	98932979	98932980	rs62155350	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs62155350-A	0.0186	2E-10		0.0338	[0.023-0.044] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1339	chr2	98932979	98932980	rs62155350	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs62155350-A	0.0186	3E-10	(MTAG)	0.0311	[0.021-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1340	chr2	99083891	99083892	rs12617721	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	2q11.2	INPP4A	rs12617721-C	NR	7E-6		1.2	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr2	99103318	99103319	rs35612603	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs35612603-A	0.1321	3E-6		4.659	z score increase	Illumina [7275796] (imputed)	N
1341	chr2	99156946	99156947	rs74586840	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA4C	5,365 Icelandic ancestry individuals	NA	2q11.2		rs74586840-G	0.01193	2E-26		0.915162	[0.75-1.08] unit decrease	Illumina [7506463] (imputed)	N
1341	chr2	99159791	99159792	rs72821955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q11.2		rs72821955-A	NR	3E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1341	chr2	99192886	99192887	rs62157967	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs62157967-?	NR	6E-6		4.527	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1342	chr2	99228974	99228975	rs148376933	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q11.2	UNC50	rs148376933-T	6.88365752408998E-6	2E-10		1.1564	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1342	chr2	99239930	99239931	rs12618769	21738484	Smith EN	2011-06-30	PLoS Genet	Genome-wide association of bipolar disorder suggests an enrichment of replicable associations in regions near genes.	Bipolar disorder	1,190 European and unknown ancestry cases, 401 European and unknown ancestry controls	16,179 individuals	2q11.2	MGAT4A	rs12618769-T	NR	1E-6		1.25	[NR]	Affymetrix [703019]	N
1342	chr2	99265185	99265186	rs11894932	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	2q11.2	MGAT4A	rs11894932-?	NR	1E-7		2.253714	[1.66-3.05]	Illumina [at least 4483243] (imputed)	N
1342	chr2	99304793	99304794	rs885036	26222057	Pander J	2015-07-29	PLoS One	Genome Wide Association Study for Predictors of Progression Free Survival in Patients on Capecitabine, Oxaliplatin, Bevacizumab and Cetuximab in First-Line Therapy of Metastatic Colorectal Cancer.	Progression free survival in metastatic colorectal cancer (chemotherapy interaction)	256 cases treated with CAPOX-B plus cetuximab, 264 cases treated with CAPOX-B	NA	2q11.2	GnT-IVa	rs885036-A		2E-8		2.13	[1.64-2.78]	Illumina [2850023] (imputed)	N
1342	chr2	99309913	99309914	rs62158012	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2q11.2	NR	rs62158012-C	NR	9E-7		2.16	[1.59-2.94]	Illumina [13976150] (imputed)	N
1342	chr2	99330448	99330449	rs1877905	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	2q11.2	NR	rs1877905-?		8E-6		1.81	[1.39-2.36]	Illumina [539473] (imputed)	N
1342	chr2	99330448	99330449	rs1877905	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q11.2	NR	rs1877905-?	NR	4E-6		2.05	[1.85-2.27]	Illumina [539000] (imputed)	N
1343	chr2	99382891	99382892	rs7578035	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs7578035-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1343	chr2	99382891	99382892	rs7578035	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2q11.2	MRPL30, MITD1, MGAT4A, LYG1, LYG2, LIPT1, EIF5B, C2orf55, C2orf15, TXNDC9, TSGA10, REV1	rs7578035-G	NR	3E-6		1.09	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
1343	chr2	99389706	99389707	rs7581349	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q11.2	MGAT4A, KIAA1211L	rs7581349-G	0.492	5E-6		1.0528532		NR [9372253] (imputed)	N
1343	chr2	99389869	99389870	rs10189330	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		2q11.2	MGAT4A	rs10189330-T	0.46	3E-6		1.16	[1.09-1.23]	Illumina [90536]	N
1343	chr2	99452457	99452458	rs6542838	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	2q11.2	NR	rs6542838-C	0.44	2E-7		0.61	unit decrease	Illumina [8591557] (imputed)	N
1343	chr2	99465417	99465418	rs10175560	32005204	Alblooshi H	2020-01-31	BMC Psychiatry	Stratified analyses of genome wide association study data reveal haplotypes for a candidate gene on chromosome 2 (KIAA1211L) is associated with opioid use in patients of Arabian descent.	Opioid use disorder	199 Arabian ancestry cases, 253 Arabian ancestry controls	NA	2q11.2	KIAA1211L	rs10175560-?	NR	2E-7				Illumina [1879623]	N
1343	chr2	99465501	99465502	rs6733011	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	2q11.2	intergenic	rs6733011-G	0.46	3E-6		1.17	[1.10-1.25]	Affymetrix, Illumina [2366197] (imputed)	N
1344	chr2	99500629	99500630	rs1581249	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q11.2	KIAA1211L	rs1581249-?		9E-6				Illumina [4322238] (imputed)	N
1344	chr2	99534925	99534926	rs6741166	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2q11.2	KIAA1211L	rs6741166-C	0.35	8E-7		0.86	[0.53-1.19] g/day increase	Affymetrix [10353649] (imputed)	N
1344	chr2	99540099	99540100	rs75317557	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	2q11.2	NR	rs75317557-C	0.04264	5E-6		0.3686	[0.23-0.51] unit increase	Illumina [10677593] (imputed)	N
1344	chr2	99559116	99559117	rs60012524	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2q11.2	NR	rs60012524-?	NR	4E-6		0.1109	[0.064-0.158] unit decrease	Illumina [at least 560000] (imputed)	N
1344	chr2	99589658	99589659	rs1901859	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs1901859-?	NR	6E-8		5.424	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1345	chr2	99679098	99679099	rs62156361	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	TSGA10	rs62156361-A	NR	1E-8		0.05911207	[0.039-0.079] unit increase	Affymetrix [NR]	N
1346	chr2	99761886	99761887	rs189480455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q11.2	C2orf15, TSGA10, C2ORF15	rs189480455-G	0.00725799999999999	3E-14		0.10695045	[0.079-0.135] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99761886	99761887	rs189480455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q11.2	C2orf15, TSGA10, C2ORF15	rs189480455-G	0.00725900000000002	5E-13		0.10192876	[0.074-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99761886	99761887	rs189480455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q11.2	C2orf15, TSGA10, C2ORF15	rs189480455-G	0.007243	4E-18		0.121842705	[0.094-0.149] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99761886	99761887	rs189480455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q11.2	C2orf15, TSGA10, C2ORF15	rs189480455-G	0.007243	4E-17		0.11826003	[0.091-0.146] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99810054	99810055	rs12053372	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q11.2		rs12053372-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1346	chr2	99841084	99841085	rs12477438	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2q11.2	NR	rs12477438-?	NR	2E-7		0.1216	[0.076-0.167] unit decrease	Illumina [at least 560000] (imputed)	N
1346	chr2	99843270	99843271	rs138249530	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	2q11.2	NR	rs138249530-T	0.03906	4E-6		0.3578	[0.21-0.51] unit increase	Illumina [10677593] (imputed)	N
1346	chr2	99859278	99859279	rs62153807	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs62153807-?	NR	2E-7		5.207	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1346	chr2	99864927	99864928	rs13020322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q11.2	C2orf15, LYG2	rs13020322-G	0.269365	7E-10		0.015636025	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99864927	99864928	rs13020322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q11.2	C2orf15, LYG2	rs13020322-G	0.269364	1E-9		0.015431489	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1346	chr2	99876243	99876244	rs2200578	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q11.2	NR	rs2200578-C	0.788386317008014	4E-7	(IGP15)	0.1902	[0.12-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1347	chr2	99934712	99934713	rs62153852	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q11.2		rs62153852-?	NR	2E-11		0.0155737	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1347	chr2	99946429	99946429	rs70940164	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q11.2	NR	rs70940164-?		7E-9		0.0137423	[0.0091-0.0184] unit increase	Affymetrix [19400418] (imputed)	N
1347	chr2	99948804	99948805	rs112900993	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q11.2	TXNDC9	rs112900993-C	0.725536	1E-9		0.0125183	[0.0085-0.0165] unit decrease	NR [13737936] (imputed)	N
1347	chr2	99948804	99948805	rs112900993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q11.2		rs112900993-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1347	chr2	99963429	99963430	rs115028891	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs115028891-?	NR	1E-6		4.895	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1347	chr2	99981221	99981222	rs62155770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs62155770-A	0.9474	7E-10		0.0196	[0.013-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1347	chr2	99981221	99981222	rs62155770	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs62155770-A	0.9474	6E-9	(MTAG)	0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr2	100045183	100045184	rs11887109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2q11.2		rs11887109-G	NR	2E-11		0.0593	[0.042-0.077] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1348	chr2	100045183	100045184	rs11887109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2q11.2		rs11887109-G	0.340053657	4E-10		0.090621494	[0.062-0.119] unit increase	Illumina [13401454] (imputed)	N
1348	chr2	100045183	100045184	rs11887109	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q11.2	Intergenic	rs11887109-?		1E-6		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
1348	chr2	100046037	100046038	rs12479064	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2q11.2	NR	rs12479064-?	NR	8E-7		0.1202	[0.073-0.167] unit increase	Illumina [at least 560000] (imputed)	N
1348	chr2	100057207	100057208	rs3792142	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q11.2	Intergenic	rs3792142-A	0.4257	6E-11	(MTAG)	0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr2	100060440	100060441	rs57977991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q11.2	Intergenic	rs57977991-T	0.4282	1E-8	(MTAG)	0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr2	100106796	100106797	rs6761390	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q11.2	Intergenic	rs6761390-C	0.5694	2E-11		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1348	chr2	100109000	100109001	rs6715321	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs6715321-T	0.4311	5E-17	(MTAG)	0.014	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr2	100109000	100109001	rs6715321	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs6715321-T	0.4277	8E-12		0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1348	chr2	100109000	100109001	rs6715321	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs6715321-T	0.4277	1E-15	(MTAG)	0.0106	[0.0081-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1348	chr2	100123029	100123030	rs6707827	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q11.2	NR	rs6707827-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1348	chr2	100123029	100123030	rs6707827	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q11.2		rs6707827-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1349	chr2	100166453	100166454	rs13427251	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	2q11.2	NR	rs13427251-?	NR	4E-6		0.0948	[0.054-0.135] unit increase	Illumina [at least 560000] (imputed)	N
1349	chr2	100190906	100190907	rs144369599	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q11.2	AFF3	rs144369599-T	0.007799	9E-13		0.09688832	[0.07-0.123] unit increase	Affymetrix [93095623] (imputed)	N
1349	chr2	100191544	100191545	rs62154466	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs62154466-A	NR	3E-9		0.05870441	[0.039-0.078] unit increase	Affymetrix [NR]	N
1349	chr2	100251388	100251389	rs77826402	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs77826402-T	0.073	2E-8		0.0151	[0.0098-0.0204] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1349	chr2	100265935	100265936	rs17782474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs17782474-A	0.9028	2E-14	(MTAG)	0.0212	[0.016-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1349	chr2	100265935	100265936	rs17782474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q11.2	Intergenic	rs17782474-A	0.9028	9E-9		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1350	chr2	100271417	100271418	rs112444624	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs112444624-T	0.9718	6E-9		0.150907	[0.097-0.205] decrease	Affymetrix [11014269] (imputed)	N
1350	chr2	100273791	100273792	rs6738724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q11.2	NR	rs6738724-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1350	chr2	100280021	100280022	rs4851221	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q11.2	AFF3	rs4851221-G	NR	1E-12		0.0258444	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
1350	chr2	100280021	100280022	rs4851221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q11.2		rs4851221-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1350	chr2	100280021	100280022	rs4851221	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q11.2	NR	rs4851221-G	0.18	9E-16		0.019	[0.014-0.024] unit increase	Affymetrix [2446094] (imputed)	N
1350	chr2	100280021	100280022	rs4851221	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q11.2	NR	rs4851221-G	0.18	5E-8				Affymetrix [2446094] (imputed)	N
1350	chr2	100288477	100288478	rs9678859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q11.2	AFF3	rs9678859-A	NR	9E-13		0.0259982	[0.019-0.033] unit increase	Affymetrix [319769] (imputed)	N
1350	chr2	100288477	100288478	rs9678859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q11.2	AFF3	rs9678859-A	NR	7E-10		0.0227143	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1350	chr2	100288477	100288478	rs9678859	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q11.2	NR	rs9678859-A	0.1816	8E-16		0.0188	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1350	chr2	100288477	100288478	rs9678859	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q11.2	NR	rs9678859-A	0.1816	2E-11		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1350	chr2	100289101	100289102	rs55779933	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q11.2	NR	rs55779933-C	0.0377734	1E-8		0.093420096	[0.061-0.126] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1350	chr2	100289101	100289102	rs55779933	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs55779933-T	NR	3E-9		0.047980092	[0.032-0.064] unit increase	Affymetrix [NR]	N
1350	chr2	100289695	100289696	rs4384839	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q11.2	AFF3	rs4384839-A	NR	1E-8		0.0174804	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
1350	chr2	100291412	100291413	rs6542886	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs6542886-T	0.4796	8E-9		0.011677001	[0.0077-0.0156] unit increase	Affymetrix [up to 18485882] (imputed)	N
1350	chr2	100306377	100306378	rs6715849	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs6715849-A	0.4401	7E-18		0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1350	chr2	100306377	100306378	rs6715849	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs6715849-A	0.4401	2E-17	(MTAG)	0.0112	[0.0087-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1350	chr2	100306377	100306378	rs6715849	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs6715849-A	0.438	2E-11		0.015149953	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1350	chr2	100309123	100309124	rs77179555	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	AFF3	rs77179555-C	NR	3E-8		5.556	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1350	chr2	100333376	100333377	rs13402908	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs13402908-C	0.4809	7E-13		0.014509402	[0.011-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1350	chr2	100341567	100341568	rs7579187	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q11.2		rs7579187-G	0.460783	1E-11		0.0573568	[0.039-0.075] increase	Affymetrix [11014269] (imputed)	N
1350	chr2	100341567	100341568	rs7579187	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs7579187-A	0.4671	2E-8		0.011433503	[0.0075-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1350	chr2	100341567	100341568	rs7579187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q11.2	Intergenic	rs7579187-A	0.5369	2E-8	(MTAG)	0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1350	chr2	100341567	100341568	rs7579187	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q11.2	AFF3	rs7579187-G	0.4627	1E-9		0.0843	[0.057-0.112] unit increase	Affymetrix [~ 11900000] (imputed)	N
1350	chr2	100341567	100341568	rs7579187	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs7579187-A	NR	3E-10		0.01933111	[0.013-0.025] unit increase	Affymetrix [NR]	N
1350	chr2	100348672	100348673	rs2043007	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs2043007-T	NR	9E-10		0.018892556	[0.013-0.025] unit increase	Affymetrix [NR]	N
1350	chr2	100360349	100360350	rs7601137	25353672	Fernandez-Navarro P	2014-10-29	Int J Cancer	Genome wide association study identifies a novel putative mammographic density locus at 1q12-q21.	Mammographic density	239 European ancestry low mammographic density females, 239 European ancestry high mammographic density females	NA	2q11.2	NR	rs7601137-T	0.848	9E-6		2.32	[1.58-3.41]	Illumina [575374]	N
1350	chr2	100384353	100384354	rs7562121	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (end stage renal disease vs non-end stage renal disease) in type 1 diabetes	729 European ancestry cases, 84 cases, 3,290 European ancestry controls, 705 controls	94 European ancestry cases, 964 cases, 993 European ancestry controls, 4806 controls	2q11.2	AFF3	rs7562121-C	0.24	4E-7		1.27	[1.17-1.39]	Illumina [NR] (imputed)	N
1350	chr2	100387558	100387559	rs2309651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q11.2	AFF3	rs2309651-C	NR	5E-10		0.0283872	[0.019-0.037] unit increase	Affymetrix [319769] (imputed)	N
1350	chr2	100387558	100387559	rs2309651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q11.2	AFF3	rs2309651-C	NR	4E-10		0.0284823	[0.02-0.037] unit increase	Affymetrix [319769] (imputed)	N
1351	chr2	100406731	100406732	rs17023131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs17023131-C	0.2648	4E-11	(conditional-joint)	0.0106	[0.0075-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1351	chr2	100423157	100423158	rs13009915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs13009915-T	0.0378	1E-8		0.0212	[0.014-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1351	chr2	100440517	100440518	rs13021035	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs13021035-A	0.1871	2E-8		0.014405307	[0.0093-0.0195] unit increase	Affymetrix [up to 18485882] (imputed)	N
1351	chr2	100441972	100441973	rs144507626	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q11.2	AFF3	rs144507626-?	NR	3E-8		0.414	[0.27-0.56] unit decrease	Illumina [34656550] (imputed)	N
1351	chr2	100451356	100451357	rs72819118	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q11.2	NR	rs72819118-C	0.0964215	4E-9		0.06970314	[0.046-0.093] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1351	chr2	100451356	100451357	rs72819118	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs72819118-T	0.0942	8E-22		0.0231	[0.018-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1351	chr2	100451356	100451357	rs72819118	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs72819118-T	0.0942	3E-23	(MTAG)	0.0223	[0.018-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1351	chr2	100451675	100451676	rs7586604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q11.2	AFF3	rs7586604-C	0.842958	2E-14		0.023659984	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1351	chr2	100451675	100451676	rs7586604	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2q11.2	AFF3	rs7586604-T	0.16	2E-6				Illumina [NR] (imputed)	N
1351	chr2	100460653	100460654	rs7583877	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q11.2	AFF3	rs7583877-C	0.30	3E-7	(ESRD)	1.29	[1.17-1.42]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1351	chr2	100460653	100460654	rs7583877	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q11.2	AFF3	rs7583877-C	0.29	1E-8	(ESRD vs. non-ESRD)	1.29	[1.18-1.40]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1351	chr2	100467996	100467997	rs76596624	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AFF3	rs76596624-?	NR	4E-10	(female)	0.387368	[NR] unit increase	Affymetrix [NR] (imputed)	N
1351	chr2	100483735	100483736	rs563212140	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q11.2		rs563212140-A	0.0046747	2E-6		0.23579	[0.14-0.33] unit increase	Affymetrix [15580782] (imputed)	N
1351	chr2	100489965	100489966	rs4851239	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	2q11.2	LYG1, AFF3	rs4851239-C	0.62	3E-11		0.033	unit increase	NR [2324712] (imputed)	N
1351	chr2	100490362	100490363	rs7609078	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	2q11.2	AFF3	rs7609078-G	NR	9E-10		1.0359304	[1.0243-1.0475]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1351	chr2	100503396	100503396	rs5832889	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	2q11.2	AFF3	rs5832889-?	NR	2E-8			[NR]	NR [NR] (imputed)	N
1351	chr2	100513152	100513153	rs75203411	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs75203411-T	0.1713	8E-13		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1351	chr2	100516637	100516638	rs79785879	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs79785879-C	0.0252	1E-9		0.038665663	[0.026-0.051] unit increase	Affymetrix [up to 18485882] (imputed)	N
1351	chr2	100516637	100516638	rs79785879	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs79785879-T	NR	4E-10		0.060496356	[0.042-0.079] unit decrease	Affymetrix [NR]	N
1352	chr2	100552511	100552512	rs28425639	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2q11.2		rs28425639-T	NR	2E-6	(GLM)	3.0464	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1352	chr2	100555865	100555866	rs77909168	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		2q11.2	AFF3	rs77909168-C	0.985	3E-6		0.056	[0.032-0.08] dioptres decrease	NR [5900115] (imputed)	N
1352	chr2	100561477	100561478	rs62147658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q11.2		rs62147658-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1352	chr2	100562327	100562328	rs7423759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs7423759-T	NR	3E-12		0.0211	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr2	100576303	100576304	rs13023088	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	AFF3	rs13023088-T	NR	3E-8		5.569	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1352	chr2	100577420	100577421	rs34321437	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs34321437-T	NR	2E-14		0.06034027	[0.045-0.076] unit increase	Affymetrix [NR]	N
1352	chr2	100588588	100588589	rs114797146	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q11.2	NA	rs114797146-T		3E-8		0.039077	[0.025-0.053] unit increase	Illumina [13288253] (imputed)	N
1352	chr2	100594711	100594712	rs75798658	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs75798658-T	NR	3E-10		0.0311	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1352	chr2	100596864	100596865	rs10202379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q11.2		rs10202379-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1352	chr2	100598725	100598726	rs34506349	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q11.2	NR	rs34506349-G	0.9598	2E-8		0.0677	[0.044-0.091] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1352	chr2	100598725	100598726	rs34506349	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q11.2	NR	rs34506349-G	0.9609	1E-8		0.0665	[0.044-0.089] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1352	chr2	100598725	100598726	rs34506349	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	AFF3	rs34506349-A	NR	3E-9		5.922	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1352	chr2	100602758	100602759	rs13032879	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs13032879-T	NR	1E-12		0.029283281	[0.021-0.037] unit increase	Affymetrix [NR]	N
1352	chr2	100604752	100604753	rs56127672	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs56127672-C	NR	3E-10		0.060207207	[0.041-0.079] unit increase	Affymetrix [NR]	N
1352	chr2	100607420	100607421	rs6719214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q11.2		rs6719214-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1352	chr2	100608839	100608840	rs34795510	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q11.2	NR	rs34795510-C	0.0357853	3E-10		0.106597096	[0.073-0.14] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1352	chr2	100608839	100608840	rs34795510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q11.2	Intergenic	rs34795510-T	0.042	3E-15	(MTAG)	0.0451	[0.034-0.056] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1352	chr2	100608839	100608840	rs34795510	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q11.2	Intergenic	rs34795510-T	0.042	2E-10		0.0452	[0.031-0.059] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1352	chr2	100608839	100608840	rs34795510	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q11.2	AFF3	rs34795510-?	NR	2E-11		6.685	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1352	chr2	100608839	100608840	rs34795510	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q11.2	AFF3	rs34795510-?	NR	6E-7		4.978	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1352	chr2	100619784	100619785	rs60473748	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs60473748-C	0.1456	2E-11		0.019188622	[0.014-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1352	chr2	100632901	100632901	rs148851593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q11.2	AFF3	rs148851593-TG	0.498963	1E-10		0.0149579	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1352	chr2	100643442	100643443	rs11123804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs11123804-G	0.341678	6E-11				Affymetrix, Illumina [24653286] (imputed)	N
1352	chr2	100643442	100643443	rs11123804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs11123804-G	0.341594	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
1352	chr2	100658743	100658744	rs72966461	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q11.2	AFF3	rs72966461-T	0.01	5E-7	(African American)	1.65	[1-2.3] unit increase	Illumina [up to 13042663] (imputed)	N
1353	chr2	100668698	100668699	rs13001130	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	AFF3	rs13001130-A	NR	2E-10		6.352	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1353	chr2	100669456	100669457	rs78633727	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs78633727-T	NR	4E-10		6.254	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1353	chr2	100670744	100670745	rs6750720	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs6750720-C	NR	4E-10		0.019654082	[0.013-0.026] unit decrease	Affymetrix [NR]	N
1353	chr2	100672407	100672408	rs13392222	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q11.2	NR	rs13392222-C	0.139	2E-14		0.0119567	[0.0089-0.015] unit decrease	NR [9732723] (imputed)	N
1353	chr2	100672407	100672408	rs13392222	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q11.2	NR	rs13392222-C	0.139	2E-10		0.023437547	[0.016-0.031] unit decrease	NR [~ 10000000] (imputed)	N
1353	chr2	100672407	100672408	rs13392222	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q11.2	NR	rs13392222-C	0.139	1E-7		0.01011	[0.0064-0.0139] unit decrease	NR [~ 9732723] (imputed)	N
1353	chr2	100672691	100672692	rs10209110	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q11.2	AFF3	rs10209110-?	0.51	7E-8		1.1223345		Illumina [129464] (imputed)	N
1353	chr2	100672691	100672692	rs10209110	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q11.2	AFF3	rs10209110-?	0.51	1E-8		1.1116052		Illumina [129464] (imputed)	N
1353	chr2	100683549	100683550	rs17023459	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs17023459-T	0.1361	1E-9	(MTAG)	0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1353	chr2	100686172	100686173	rs6714788	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs6714788-T	NR	9E-12		0.019918906	[0.014-0.026] unit increase	Affymetrix [NR]	N
1353	chr2	100686485	100686486	rs7582731	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs7582731-C	0.4957	1E-14		0.01555448	[0.012-0.02] unit increase	Affymetrix [up to 18485882] (imputed)	N
1353	chr2	100709351	100709352	rs2699616	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs2699616-T	0.499475	7E-10		0.054392	[0.037-0.072] increase	Affymetrix [11014269] (imputed)	N
1353	chr2	100729292	100729293	rs4851250	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AFF3	rs4851250-C	0.1774	6E-17		0.0222164	[0.017-0.027] unit increase	Affymetrix [up to 18485882] (imputed)	N
1353	chr2	100729292	100729293	rs4851250	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs4851250-T	NR	6E-17		0.03202172	[0.025-0.04] unit decrease	Affymetrix [NR]	N
1353	chr2	100739440	100739441	rs6745099	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q11.2	NR	rs6745099-?	NR	2E-7				Affymetrix [NR]	N
1353	chr2	100743491	100743492	rs6732141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q11.2	AFF3	rs6732141-C	0.510533	3E-11		0.014951149	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr2	100751149	100751150	rs11677607	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q11.2	NA	rs11677607-T	0.2444	5E-20		0.0182	[0.014-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1353	chr2	100753489	100753490	rs4851251	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs4851251-T	0.2718	1E-9		0.015220452	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1353	chr2	100754088	100754089	rs73966422	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q11.2	NA	rs73966422-C	0.8779	2E-16		0.0238	[0.018-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1353	chr2	100754996	100754997	rs11681227	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q11.2	NR	rs11681227-A	0.641431	1E-28		0.02217	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1353	chr2	100756008	100756009	rs13032454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs13032454-C	0.386187	8E-17				Affymetrix, Illumina [24246363] (imputed)	N
1353	chr2	100757440	100757440	rs70940197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q11.2	AFF3	rs70940197-GTGATGA	0.343815	7E-18		0.020544743	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr2	100758708	100758709	rs11900482	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	2q11.2	AFF3	rs11900482-C	0.3581	6E-9		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
1353	chr2	100759284	100759285	rs11123810	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2q11.2	AFF3	rs11123810-?	NR	7E-12		0.91		Illumina [109572]	N
1353	chr2	100759476	100759477	rs11692867	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	2q11.2	AFF3	rs11692867-G	NR	9E-8		1.13	[1.08-1.19]	Illumina [7461261] (imputed)	N
1353	chr2	100759476	100759477	rs11692867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs11692867-G	0.642001	5E-27				Affymetrix, Illumina [17210439] (imputed)	N
1353	chr2	100759476	100759477	rs11692867	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	2q11.2	AFF3	rs11692867-?	NR	2E-10		0.02694	[0.019-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
1353	chr2	100760171	100760172	rs11123811	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2q11.2		rs11123811-T	NR	2E-18		1.1	[1.08-1.13]	NR [13810676] (imputed)	N
1353	chr2	100760171	100760172	rs11123811	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2q11.2	AFF3	rs11123811-A	0.51	9E-16		1.13	[1.10-1.17]	Illumina [133816] (imputed)	N
1353	chr2	100762168	100762169	rs2309752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q11.2	NR	rs2309752-A	0.514484	5E-18		0.015749	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1353	chr2	100762168	100762169	rs2309752	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs2309752-A	NR	1E-14		0.023659298	[0.018-0.03] unit increase	Affymetrix [NR]	N
1353	chr2	100762215	100762216	rs368755101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q11.2		rs368755101-A	NR	8E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1353	chr2	100762215	100762216	rs368755101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q11.2	AFF3	rs368755101-A	0.359934	3E-24		0.023938764	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr2	100762215	100762216	rs368755101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q11.2	AFF3	rs368755101-A	0.3619	2E-12		0.02618013	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1353	chr2	100762215	100762216	rs368755101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q11.2	AFF3	rs368755101-A	0.3613	6E-10		0.02357079	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1353	chr2	100762451	100762463	rs370663203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q11.2		rs370663203-G	NR	8E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1353	chr2	100762785	100762786	rs4851253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q11.2		rs4851253-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1353	chr2	100762936	100762937	rs4851254	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	AFF3	rs4851254-C	NR	5E-17		0.028743519	[0.022-0.035] unit decrease	Affymetrix [NR]	N
1353	chr2	100763899	100763900	rs12712067	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q11.2	AFF3	rs12712067-T	0.358	4E-9		0.925		Illumina [715631] (imputed)	N
1353	chr2	100763899	100763900	rs12712067	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q11.2	AFF3	rs12712067-T	0.358	4E-9		0.925		Illumina [715631] (imputed)	N
1353	chr2	100764003	100764004	rs13415465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q11.2		rs13415465-G	NR	3E-35		0.0266	[0.022-0.031] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1353	chr2	100764003	100764004	rs13415465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q11.2		rs13415465-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1353	chr2	100764003	100764004	rs13415465	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	2q11.2	AFF3	rs13415465-?	0.64	7E-11		1.1179594		Illumina [252970]	N
1353	chr2	100764003	100764004	rs13415465	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q11.2	AFF3	rs13415465-?		1E-7		1.1053423		Illumina [252970]	N
1353	chr2	100764003	100764004	rs13415465	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q11.2	AFF3	rs13415465-G	NA	4E-12				Illumina [252970]	N
1353	chr2	100764086	100764087	rs13415583	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q11.2	AFF3	rs13415583-T	0.65	1E-7		1.1111112		Illumina [135870]	N
1353	chr2	100764124	100764125	rs10496344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q11.2		rs10496344-C	NR	1E-8		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1353	chr2	100764124	100764125	rs10496344	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q11.2	AFF3	rs10496344-C	0.358276	7E-13		0.016637448	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1353	chr2	100764124	100764125	rs10496344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q11.2		rs10496344-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1353	chr2	100775919	100775920	rs2309753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q11.2		rs2309753-A	0.361215	3E-15		0.018034186	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr2	100775919	100775920	rs2309753	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q11.2		rs2309753-A	0.361238	2E-9		0.013762509	[0.0093-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
1353	chr2	100783652	100783653	rs11123816	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs11123816-A	NR	3E-11		6.639	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1353	chr2	100785951	100785952	rs72819186	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q11.2		rs72819186-C	0.884	5E-14		0.014	[0.01-0.018] unit increase	NR [NR] (imputed)	N
1353	chr2	100790782	100790783	rs10197987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs10197987-T	0.411645	6E-24				Affymetrix, Illumina [24332387] (imputed)	N
1354	chr2	100794939	100794940	rs56054309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q11.2	NR	rs56054309-C	0.38095	1E-24		0.019593	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1354	chr2	100794939	100794940	rs56054309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q11.2	NR	rs56054309-C	0.381174	6E-11		0.012465	[0.0087-0.0162] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1354	chr2	100795328	100795329	rs11689956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q11.2		rs11689956-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1354	chr2	100795328	100795329	rs11689956	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q11.2	NR	rs11689956-C	0.235753	4E-12		0.0250669	[0.018-0.032] unit increase	NR [19129689] (imputed)	N
1354	chr2	100795925	100795926	rs13005282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q11.2	NR	rs13005282-G	0.362958	1E-12		0.014378	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1354	chr2	100796067	100796070	rs555298976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q11.2		rs555298976-C	NR	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1354	chr2	100796181	100796182	rs11691486	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q11.2	AFF3	rs11691486-T	0.759952	9E-10		0.0140998	[0.0096-0.0186] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr2	100796849	100796850	rs7583067	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q11.2	AFF3	rs7583067-C	0.759886	7E-11		0.0145605	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1354	chr2	100796849	100796850	rs7583067	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	LINC01104	rs7583067-T	NR	2E-13		7.332	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1354	chr2	100797911	100797912	rs12712072	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q11.2	NR	rs12712072-?	NR	9E-17				Affymetrix [~ 8270000] (imputed)	N
1354	chr2	100799002	100799003	rs17023659	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q11.2	AFF3	rs17023659-?	NR	1E-6	(CE 18:0)	0.960963	[0.57-1.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1354	chr2	100801866	100801867	rs4851263	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs4851263-A	0.103	8E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100801958	100801959	rs13002946	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LINC01104	rs13002946-A	NR	6E-12		0.013929	[0.01-0.0179] unit increase	Affymetrix [18485882] (imputed)	N
1354	chr2	100801958	100801959	rs13002946	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q11.2	NA	rs13002946-A	0.2652	4E-20		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1354	chr2	100803777	100803778	rs6722241	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs6722241-C	0.2718	5E-19		0.020165319	[0.016-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100805127	100805128	rs12712073	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs12712073-C	0.3813	1E-11		0.01417368	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100805127	100805128	rs12712073	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LINC01104	rs12712073-T	NR	5E-9		0.018050902	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1354	chr2	100805272	100805273	rs10167279	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LINC01104	rs10167279-A	NR	2E-8		0.011346	[0.0074-0.0153] unit increase	Affymetrix [18485882] (imputed)	N
1354	chr2	100805995	100805996	rs11691869	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q11.2	AFF3	rs11691869-C	0.637766	4E-15		0.0112311	[0.0084-0.014] unit increase	Affymetrix [12370749]	N
1354	chr2	100806513	100806514	rs6712515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	2q11.2		rs6712515-C	0.520165	8E-11		0.0243592	[0.017-0.032] unit decrease	Illumina [13477433] (imputed)	N
1354	chr2	100806513	100806514	rs6712515	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q11.2	LINC01104	rs6712515-?	NR	2E-15		0.016002202	[0.012-0.02] unit decrease	NR [7306098]	N
1354	chr2	100806513	100806514	rs6712515	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q11.2	intergenic	rs6712515-T	0.471	2E-9		0.026	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1354	chr2	100806513	100806514	rs6712515	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q11.2	AFF3	rs6712515-?	NR	2E-11				Illumina [129464] (imputed)	N
1354	chr2	100806513	100806514	rs6712515	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q11.2	AFF3	rs6712515-?	NR	3E-11				Illumina [129464] (imputed)	N
1354	chr2	100806718	100806719	rs6709656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q11.2	Intergenic	rs6709656-A	0.6055	2E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100806939	100806940	rs11676922	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	952 Han Chinese ancestry cases, 943 Han Chinese ancestry controls	5,539 European ancestry cases, 20,169 European ancestry controls	2q11.2	AFF3	rs11676922-T		2E-8		1.133	[NR]	Affymetrix [1497047] (imputed)	N
1354	chr2	100806939	100806940	rs11676922	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q11.2	AFF3	rs11676922-T	0.46	1E-14		1.12	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1354	chr2	100807724	100807725	rs2309757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q11.2	Intergenic	rs2309757-T	0.6055	2E-19	(MTAG)	0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100807724	100807725	rs2309757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs2309757-T	0.605	2E-40	(MTAG)	0.0225	[0.019-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100807724	100807725	rs2309757	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	2q11.2	NR	rs2309757-?	0.3869	4E-19		1.0556083	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1354	chr2	100813083	100813083	rs567095143	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	2q11.2	AFF3, LONRF2	rs567095143-CT	0.444822824067094	5E-8		0.03659779	[0.023-0.05] unit decrease	Affymetrix [35186738] (imputed)	N
1354	chr2	100813498	100813499	rs6740838	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	2q11.2	AFF3, LINC01104	rs6740838-?	NR	6E-17		0.03766	[0.029-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
1354	chr2	100814857	100814858	rs4556997	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q11.2	NR	rs4556997-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1354	chr2	100814892	100814893	rs893245	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2q11.2	AFF3, LINC01104	rs893245-?	NR	2E-12		0.03182	[0.023-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1354	chr2	100818478	100818479	rs4851266	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	2q11.2	LOC150577	rs4851266-T	0.396	5E-11	(College)	1.05	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
1354	chr2	100820420	100820421	rs11689199	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q11.2	NR	rs11689199-?		6E-17		0.0184644	[0.014-0.023] unit increase	Affymetrix [19400418] (imputed)	N
1354	chr2	100820420	100820421	rs11689199	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q11.2	AFF3	rs11689199-A	0.5978	6E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1354	chr2	100821544	100821545	rs13018640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs13018640-T	0.6017	1E-50		0.0215	[0.019-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100821544	100821545	rs13018640	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs13018640-T	0.6017	1E-57	(MTAG)	0.0214	[0.019-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100821544	100821545	rs13018640	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q11.2	LINC01104	rs13018640-?	NR	2E-16		8.234	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1354	chr2	100821544	100821545	rs13018640	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q11.2	LINC01104	rs13018640-?	NR	7E-6		4.499	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1354	chr2	100821547	100821548	rs12987662	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q11.2		rs12987662-A	0.3787	2E-17		84.54849	z score increase	NR [6814003]	N
1354	chr2	100821547	100821548	rs12987662	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs12987662-A	0.3934	9E-28		0.024914434	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs9653442-T	0.4652	6E-23		0.019975968	[0.016-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LINC01104	rs9653442-T	NR	3E-9		0.011995	[0.008-0.016] unit increase	Affymetrix [18485882] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q11.2	AFF3	rs9653442-T	NR	2E-15		0.103718	[0.078-0.129] unit decrease	Illumina [8380626] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q11.2	AFF3	rs9653442-T	0.54	4E-12	(EA)	0.10642	[0.076-0.136] unit decrease	Illumina [8380626] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs9653442-T	0.537	9E-40	(conditional-joint)	0.0189	[0.016-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LINC01104	rs9653442-T	NR	7E-16		0.023584273	[0.018-0.029] unit increase	Affymetrix [NR]	N
1354	chr2	100825366	100825367	rs9653442	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q11.2	AFF3	rs9653442-C	0.46	2E-18		1.11	[1.09-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q11.2	AFF3	rs9653442-C	0.46	1E-14	(EA)	1.12	[1.09-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1354	chr2	100825366	100825367	rs9653442	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	2q11.2	AFF3, LOC150577	rs9653442-G	0.46	5E-6		1.11	[1.05-1.17]	Affymetrix [NR]	N
1354	chr2	100826571	100826572	rs72819191	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs72819191-G	0.2759	8E-11		0.014554694	[0.01-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100827641	100827641	rs541582524	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q11.2		rs541582524-G	0.59	2E-14				NR [NR] (imputed)	N
1354	chr2	100827641	100827641	rs541582524	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q11.2		rs541582524-G	0.59	5E-19		0.014	% increase	NR [NR] (imputed)	N
1354	chr2	100827657	100827657	rs35125385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q11.2		rs35125385-GCT	NR	3E-15		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1354	chr2	100832181	100832182	rs1160543	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	2q11.2	AFF3, LONRF2, CHST10, NMS	rs1160543-C	0.597143	3E-11		0.00491943	[0.0035-0.0064] unit decrease	NR [NR] (imputed)	N
1354	chr2	100832217	100832218	rs1160544	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		2q11.2	LINC01104, AFF3	rs1160544-A	0.395	3E-9		0.082	NR unit decrease	Illumina [2400000] (imputed)	N
1354	chr2	100832217	100832218	rs1160544	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		2q11.2	AFF3, LINC01104	rs1160544-A	0.395	5E-9		0.092	NR unit decrease	Illumina [2400000] (imputed)	N
1354	chr2	100834216	100834217	rs10194635	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q11.2	NR	rs10194635-T	0.387674	5E-9		0.042052086	[0.028-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1354	chr2	100834216	100834217	rs10194635	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	2q11.2	AFF3, LONRF2	rs10194635-T	0.39	8E-7	(dominant model)	1.24	[1.14-1.36]	Illumina [123003]	N
1354	chr2	100835733	100835734	rs10865035	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs10865035-A	NR	1E-9		6.061	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1354	chr2	100835733	100835734	rs10865035	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q11.2	AFF3	rs10865035-A	0.47	2E-6		1.12	[1.07-1.17]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1354	chr2	100836591	100836597	rs535250898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q11.2		rs535250898-T	NR	1E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1354	chr2	100841234	100841235	rs13017207	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q11.2	NR	rs13017207-A	0.3952	9E-15		0.019643359	[0.015-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
1354	chr2	100845087	100845088	rs6542920	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q11.2	LINC01104	rs6542920-A	0.34609	7E-10		0.0118856	[0.0081-0.0157] unit decrease	NR [13737936] (imputed)	N
1354	chr2	100845087	100845088	rs6542920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q11.2		rs6542920-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1354	chr2	100849340	100849341	rs12614880	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LINC01104	rs12614880-G	NR	5E-13		0.01461	[0.011-0.019] unit increase	Affymetrix [18485882] (imputed)	N
1354	chr2	100852733	100852734	rs13010010	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	2q11.2	AFF3, CHST10, LONRF2	rs13010010-T	0.39	5E-11		6.57	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1354	chr2	100852733	100852734	rs13010010	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LINC01104	rs13010010-T	NR	6E-20		0.027633533	[0.022-0.034] unit increase	Affymetrix [NR]	N
1354	chr2	100852733	100852734	rs13010010	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q11.2	LINC01104	rs13010010-?	NR	4E-9		5.891	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1354	chr2	100852733	100852734	rs13010010	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2q11.2	LINC01104, AFF3	rs13010010-T	0.3782	8E-7	(Adults)	4.948	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1354	chr2	100852733	100852734	rs13010010	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2q11.2	LINC01104, AFF	rs13010010-T	0.3782	2E-8		5.654	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
1354	chr2	100853186	100853187	rs7597861	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs7597861-A	0.332	2E-8		0.012014598	[0.0078-0.0162] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100858121	100858122	rs11685491	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs11685491-G	0.3791	4E-21		0.01973485	[0.016-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100869701	100869702	rs2309812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q11.2		rs2309812-?	NR	9E-21				NR [~ 8900000] (imputed)	N
1354	chr2	100869701	100869702	rs2309812	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs2309812-T	NR	1E-15		8.027	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1354	chr2	100869701	100869702	rs2309812	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	LINC01104	rs2309812-T	NR	2E-12		7.045	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1354	chr2	100871185	100871186	rs11123820	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q11.2	NR	rs11123820-A	0.398608	2E-16		0.05300554	[0.04-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1354	chr2	100871185	100871186	rs11123820	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q11.2		rs11123820-?	NR	3E-11				NR [7857346] (imputed)	N
1354	chr2	100871185	100871186	rs11123820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q11.2	Intergenic	rs11123820-A	0.6057	1E-32	(MTAG)	0.0279	[0.023-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100871185	100871186	rs11123820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q11.2	Intergenic	rs11123820-A	0.6057	9E-17		0.0243	[0.019-0.03] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1354	chr2	100876110	100876111	rs4331524	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	LINC01104	rs4331524-T	NR	3E-10		6.288	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1354	chr2	100876627	100876628	rs4443016	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2q11.2	LINC01104	rs4443016-C	0.5038	1E-13		0.0706	[0.052-0.089] unit decrease	NR [9744772] (imputed)	N
1354	chr2	100876627	100876628	rs4443016	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LINC01104	rs4443016-G	NR	1E-10		0.012947	[0.009-0.0169] unit increase	Affymetrix [18485882] (imputed)	N
1354	chr2	100876788	100876789	rs4438499	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LINC01104	rs4438499-A	0.4979	2E-20		0.018696642	[0.015-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100876788	100876789	rs4438499	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LINC01104	rs4438499-A	NR	3E-19		0.026195511	[0.02-0.032] unit increase	Affymetrix [NR]	N
1354	chr2	100877369	100877370	rs2067783	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs2067783-T	NR	9E-15		7.759	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1354	chr2	100880774	100880775	rs72821122	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs72821122-T	0.8145	6E-32	(conditional-joint)	0.0215	[0.018-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100884588	100884589	rs72821126	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs72821126-C	NR	2E-18		0.0282	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1354	chr2	100893112	100893113	rs6542924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q11.2		rs6542924-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1354	chr2	100894886	100894887	rs4851284	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q11.2	NR	rs4851284-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1354	chr2	100894886	100894887	rs4851284	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q11.2	NA	rs4851284-T	0.6685	6E-13		0.0151	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1354	chr2	100912462	100912463	rs7582180	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LONRF2	rs7582180-A	NR	1E-11		0.020782456	[0.015-0.027] unit decrease	Affymetrix [NR]	N
1354	chr2	100915771	100915772	rs4851287	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	2q11.2	LONRF2	rs4851287-A	0.3461	2E-12		0.0128	[0.0093-0.0163] unit increase	Illumina [246328]	N
1354	chr2	100924821	100924822	rs71413877	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LONRF2	rs71413877-A	0.03649	7E-13		0.037178595	[0.027-0.047] unit increase	Affymetrix [up to 18485882] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs71413877-A	0.0384	6E-13	(MTAG)	0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs71413877-A	0.041	3E-22		0.0351	[0.028-0.042] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs71413877-A	0.041	1E-24	(MTAG)	0.0344	[0.028-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs71413877-A	NR	3E-10		6.279	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	LONRF2	rs71413877-A	NR	2E-9		5.967	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1354	chr2	100924821	100924822	rs71413877	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LONRF2	rs71413877-A	NR	5E-13		0.056720346	[0.041-0.072] unit increase	Affymetrix [NR]	N
1354	chr2	100924821	100924822	rs71413877	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs71413877-A	0.0438	2E-9		0.034708224	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1355	chr2	100929525	100929526	rs7606277	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs7606277-A	NR	4E-12		6.929	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1355	chr2	100930133	100930134	rs11123825	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LONRF2	rs11123825-A	NR	3E-9		0.011969	[0.008-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
1355	chr2	100936368	100936369	rs75152355	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LONRF2	rs75152355-T	NR	3E-9		0.059144493	[0.04-0.079] unit decrease	Affymetrix [NR]	N
1355	chr2	100938916	100938917	rs11895772	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	LONRF2	rs11895772-C	NR	3E-9		0.01202	[0.0081-0.016] unit increase	Affymetrix [18485882] (imputed)	N
1355	chr2	100938916	100938917	rs11895772	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LONRF2	rs11895772-C	NR	7E-16		0.024872731	[0.019-0.031] unit increase	Affymetrix [NR]	N
1355	chr2	100939116	100939117	rs10183150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q11.2	Intergenic	rs10183150-A	0.5013	3E-16		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1355	chr2	100944382	100944383	rs6542930	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q11.2	NR	rs6542930-A	0.499	1E-9		0.00888325	[0.006-0.0117] unit increase	NR [9732723] (imputed)	N
1355	chr2	100958803	100958804	rs4851300	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	LONRF2	rs4851300-A	0.3449	5E-12		0.014697237	[0.011-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1355	chr2	100958803	100958804	rs4851300	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q11.2	NR	rs4851300-A	NR	3E-10		6.3	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1355	chr2	100958803	100958804	rs4851300	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	LONRF2	rs4851300-A	NR	2E-8		5.585	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1355	chr2	100958803	100958804	rs4851300	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	LONRF2	rs4851300-A	NR	9E-11		0.020957176	[0.015-0.027] unit increase	Affymetrix [NR]	N
1355	chr2	100969731	100969743	rs142864523	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	2q11.2	NR	rs142864523-T	NR	1E-9		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1355	chr2	100986963	100986964	rs1437971	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AC012493.2	rs1437971-C	0.3587	7E-12		0.014617317	[0.01-0.019] unit increase	Affymetrix [up to 18485882] (imputed)	N
1355	chr2	100986963	100986964	rs1437971	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2q11.2	CHST10	rs1437971-A	0.349361	1E-10	(EA)	0.00847493	[0.0059-0.011] unit increase	Affymetrix [~ 8800000] (imputed)	N
1355	chr2	101007915	101007916	rs9808480	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q11.2	NR	rs9808480-A	0.01568	2E-8	(GSTT2B)	0.1084	NR unit increase	Illumina [1671387] (imputed)	N
1355	chr2	101013083	101013084	rs12467104	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	CHST10	rs12467104-A	0.1821	7E-10		0.016252948	[0.011-0.021] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1355	chr2	101014362	101014363	rs2241809	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q11.2		rs2241809-T	0.4757	4E-8		40.080097	z score increase	NR [6814003]	N
1355	chr2	101029001	101029002	rs4851313	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	CHST10	rs4851313-A	NR	6E-16		0.023619873	[0.018-0.029] unit increase	Affymetrix [NR]	N
1355	chr2	101041229	101041230	rs56211325	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q11.2	AC012493.1	rs56211325-T	NR	6E-9		0.011366	[0.0075-0.0152] unit increase	Affymetrix [18485882] (imputed)	N
1355	chr2	101042121	101042122	rs7590388	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	ENSG00000238029	rs7590388-T	NR	5E-9		5.864	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1355	chr2	101044794	101044795	rs9646954	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	ENSG00000238029	rs9646954-A	NR	5E-10		0.0200858	[0.014-0.026] unit increase	Affymetrix [NR]	N
1355	chr2	101050352	101050353	rs10164820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs10164820-C	0.183	2E-9	(MTAG)	0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1355	chr2	101050352	101050353	rs10164820	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs10164820-C	0.1804	2E-17	(MTAG)	0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1355	chr2	101052582	101052583	rs13416322	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	ENSG00000238029	rs13416322-T	NR	4E-8		0.020664625	[0.013-0.028] unit increase	Affymetrix [NR]	N
1356	chr2	101080213	101080214	rs13424410	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	NMS	rs13424410-C	0.1666	2E-8		0.014645624	[0.0095-0.0198] unit increase	Affymetrix [up to 18485882] (imputed)	N
1356	chr2	101128094	101128095	rs10166286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs10166286-T	0.173	4E-16		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1356	chr2	101147455	101147456	rs76353274	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AC068538.2	rs76353274-A	0.02437	3E-10		0.03953605	[0.027-0.052] unit increase	Affymetrix [up to 18485882] (imputed)	N
1356	chr2	101147455	101147456	rs76353274	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs76353274-?	NR	6E-6		4.541	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1356	chr2	101147455	101147456	rs76353274	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	ENSG00000204637	rs76353274-A	NR	3E-8		0.052954994	[0.034-0.072] unit increase	Affymetrix [NR]	N
1356	chr2	101151829	101151830	rs34106693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs34106693-C	0.8303	9E-10	(MTAG)	0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1356	chr2	101151829	101151830	rs34106693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs34106693-C	0.8318	2E-16		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1356	chr2	101151829	101151830	rs34106693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs34106693-C	0.8318	8E-18	(MTAG)	0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1356	chr2	101151829	101151830	rs34106693	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs34106693-C	0.8315	2E-8		0.01722251	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1357	chr2	101207260	101207261	rs187848990	27818178	Hill WD	2016-11-03	Curr Biol	Molecular Genetic Contributions to Social Deprivation and Household Income in UK Biobank.	Household income	96,900 British ancestry individuals	NA	2q11.2	AFF3, CHST10, LONRF2, NMS, PDCL3	rs187848990-T	NR	2E-8		0.077	unit increase	Affymetrix [~ 17300000] (imputed)	N
1357	chr2	101220374	101220375	rs68147667	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2q11.2	PDCL3, LOC105373507	rs68147667-?	NR	5E-6		2.78		Illumina [6778521] (imputed)	N
1357	chr2	101244889	101244890	rs112752332	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q11.2	NR	rs112752332-T	0.02091	2E-8	(EIF2B1)	0.01459	NR unit increase	Illumina [1671387] (imputed)	N
1357	chr2	101282189	101282190	rs191718719	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicoccus pleomorphus abundance in stool	5,959 Finnish ancestry individuals	NA	2q11.2		rs191718719-T	0.0151973	3E-8		0.219786	[0.14-0.3] unit increase	Illumina [7980478] (imputed)	N
1357	chr2	101282189	101282190	rs191718719	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicoccus abundance in stool	5,959 Finnish ancestry individuals	NA	2q11.2		rs191718719-T	0.0151973	3E-8		0.2449	[0.16-0.33] unit increase	Illumina [7980478] (imputed)	N
1357	chr2	101304157	101304158	rs11123840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q11.2	NPAS2	rs11123840-?	NR	7E-6	(gentisic acid)	0.18679859	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1357	chr2	101314068	101314069	rs2970989	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q11.2	Intergenic	rs2970989-T	NR	4E-8	(between families)	5.479	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1357	chr2	101317259	101317260	rs3112255	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	ENSG00000228488	rs3112255-A	NR	5E-10		0.01860997	[0.013-0.024] unit decrease	Affymetrix [NR]	N
1358	chr2	101319711	101319712	rs10175405	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q11.2	ENSG00000228488	rs10175405-?	NR	3E-8		5.547	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1358	chr2	101321074	101321075	rs1028045	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q11.2	ENSG00000228488	rs1028045-A	NR	7E-11		0.019022072	[0.013-0.025] unit increase	Affymetrix [NR]	N
1358	chr2	101322192	101322193	rs2970991	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q11.2	NR	rs2970991-C	0.457256	2E-8		0.03508894	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1358	chr2	101322192	101322193	rs2970991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q11.2	Intergenic	rs2970991-C	0.5283	3E-11	(MTAG)	0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1358	chr2	101322192	101322193	rs2970991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q11.2	Intergenic	rs2970991-C	0.5283	2E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1358	chr2	101322192	101322193	rs2970991	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q11.2	NR	rs2970991-?	NR	9E-6		4.429	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1358	chr2	101322308	101322309	rs2970992	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q11.2	NPAS2, NMS	rs2970992-A	0.493	8E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1358	chr2	101323577	101323578	rs2942884	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q11.2	Intergenic	rs2942884-A	0.4577	3E-10	(MTAG)	0.0104	[0.0071-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1358	chr2	101323577	101323578	rs2942884	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs2942884-A	0.4639	2E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1358	chr2	101328727	101328728	rs77702819	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q11.2	AC092168.4	rs77702819-T	0.08823	2E-8		0.019685926	[0.013-0.027] unit increase	Affymetrix [up to 18485882] (imputed)	N
1358	chr2	101328727	101328728	rs77702819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs77702819-T	0.0907	4E-14		0.0187	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1358	chr2	101328727	101328728	rs77702819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs77702819-T	0.0907	2E-16	(MTAG)	0.0189	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1358	chr2	101328727	101328728	rs77702819	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q11.2	NR	rs77702819-T	0.0909	3E-8		0.02218497	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1358	chr2	101347300	101347301	rs182466621	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q11.2	NR	rs182466621-?	NR	8E-7	(AA)	1.3747	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1358	chr2	101347300	101347301	rs182466621	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q11.2	NR	rs182466621-?	NR	2E-7	(AA)	1.2926	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1358	chr2	101420851	101420852	rs6707510	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	2q11.2	NR	rs6707510-G		9E-6		0.1328	[0.074-0.191] SD units decrease	NR [10700000] (imputed)	N
1358	chr2	101424330	101424331	rs7565981	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	2q11.2	NPAS2	rs7565981-?	NR	4E-8		2.98	[2.03-4.35]	Affymetrix [287554]	N
1358	chr2	101428118	101428119	rs7580771	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2q11.2		rs7580771-?	NR	5E-10		0.0165625	[0.011-0.022] unit decrease	NR [6912294] (imputed)	N
1358	chr2	101432537	101432538	rs117207561	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q11.2		rs117207561-A	NR	1E-6		1.8156	[1.1-2.53] unit increase	Illumina [NR] (imputed)	N
1358	chr2	101440150	101440151	rs6724965	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2q11.2	NR	rs6724965-G	0.171608	1E-10		0.016541	[0.011-0.022] unit decrease	Affymetrix [16668957] (imputed)	N
1358	chr2	101443396	101443397	rs3849374	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2q11.2		rs3849374-G	0.821971	1E-10		0.017	[0.011-0.023] unit decrease	NR [7250403] (imputed)	N
1359	chr2	101544573	101544574	rs3754673	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	2q11.2	NPAS2	rs3754673-?	NR	8E-7		0.17	[0.1-0.24] unit decrease	Illumina [7870334] (imputed)	N
1359	chr2	101573213	101573214	rs4850954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q11.2		rs4850954-T	0.4628	4E-8		0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1359	chr2	101573213	101573214	rs4850954	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q11.2	Intergenic	rs4850954-T	0.4628	1E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1359	chr2	101576745	101576746	rs57069400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q11.2		rs57069400-T	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1359	chr2	101576745	101576746	rs57069400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q11.2	NPAS2	rs57069400-T	NR	1E-9		0.0247609	[0.017-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1359	chr2	101578021	101578022	rs72818964	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q11.2		rs72818964-A	NR	6E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1359	chr2	101578049	101578050	rs17020663	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q11.2	chr2mb101	rs17020663-C	0.13814987	2E-7		0.2332	[0.14-0.32] unit increase	Affymetrix [~ 9800000] (imputed)	N
1359	chr2	101578457	101578458	rs6747755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q11.2	NPAS2	rs6747755-A	NR	3E-8		0.0187917	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1359	chr2	101578457	101578458	rs6747755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q11.2		rs6747755-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1359	chr2	101578488	101578489	rs6747874	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q11.2	NPAS2	rs6747874-A	0.22	5E-9		5.86	z-score increase	Affymetrix [4314223] (imputed)	N
1359	chr2	101578488	101578489	rs6747874	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q11.2	NPAS2	rs6747874-G		1E-8		0.171	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1360	chr2	101591709	101591710	rs34509802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q11.2		rs34509802-A	NR	7E-12		0.0199	[0.014-0.026] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1360	chr2	101591709	101591710	rs34509802	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q11.2	NPAS2	rs34509802-A	0.1785	1E-12		1.0403945		Affymetrix [11880941] (imputed)	N
1360	chr2	101592060	101592061	rs60866311	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q11.2	NR	rs60866311-?	NR	9E-7	(Latino)	0.7469	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1360	chr2	101594003	101594004	rs113358490	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	2q11.2	NR	rs113358490-A	0.008712	4E-6		0.7548	[0.44-1.07] unit increase	Illumina [10677593] (imputed)	N
1360	chr2	101596619	101596620	rs36055153	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	2q11.2	NPAS2	rs36055153-A	0.1641	1E-7	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1360	chr2	101596619	101596620	rs36055153	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	2q11.2	NPAS2	rs36055153-A	0.1641	5E-8		0.1931	NR mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
1360	chr2	101596619	101596620	rs36055153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q11.2		rs36055153-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1360	chr2	101599337	101599338	rs6543004	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q11.2	NPAS2	rs6543004-A	0.140598	9E-10		0.02017632	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1360	chr2	101603811	101603812	rs11123857	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q11.2	NPAS2	rs11123857-?	NR	2E-8		0.079	[0.051-0.107] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1360	chr2	101608145	101608146	rs56405342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q11.2	NPAS2	rs56405342-T	0.140709	1E-10		0.020872977	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr2	101608145	101608146	rs56405342	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2q11.2	NPAS2	rs56405342-C	0.86	6E-8				Affymetrix, Illumina [8002429] (imputed)	N
1360	chr2	101612583	101612584	rs1053095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q11.2		rs1053095-A	NR	2E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1360	chr2	101613846	101613847	rs12622879	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q11.2	AC016738.4	rs12622879-C	NR	3E-8		0.0231236	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1360	chr2	101624888	101624889	rs1079259	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q11.2	RPL31	rs1079259-A	0.858073	3E-13		0.0051442	[0.0037-0.0066] unit increase	Affymetrix [13995440] (imputed)	N
1360	chr2	101625659	101625670	rs373432354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q11.2		rs373432354-T	NR	8E-12		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1360	chr2	101627924	101627925	rs1062062	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q11.2	NR	rs1062062-T	0.14	2E-10		0.0165	[0.011-0.022] unit increase	NR [NR]	N
1360	chr2	101627924	101627925	rs1062062	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	2q11.2	NR	rs1062062-T	NR	7E-8		0.015000863	[0.0096-0.0204] unit decrease	Illumina [242289]	N
1360	chr2	101627924	101627925	rs1062062	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	2q11.2	NR	rs1062062-T	0.14	4E-6		0.02	unit decrease	Illumina [242289]	N
1360	chr2	101634829	101634830	rs55923142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q11.2		rs55923142-A	NR	2E-11		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1360	chr2	101642259	101642260	rs10185855	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	2q11.2	NR	rs10185855-?	NR	2E-7				NR [1800000]	N
1360	chr2	101643505	101643506	rs72821058	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2q11.2	TBC1D8	rs72821058-?	NR	1E-8		0.0022	[0.0014-0.003] unit decrease	Affymetrix [21347608] (imputed)	N
1360	chr2	101643505	101643506	rs72821058	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2q11.2	TBC1D8	rs72821058-?	NR	4E-10		0.0036	[0.0024-0.0048] unit decrease	Affymetrix [21347608] (imputed)	N
1360	chr2	101647893	101647894	rs55771809	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q11.2	TBC1D8	rs55771809-G	0.856	2E-9		0.109	[0.074-0.144] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1360	chr2	101648129	101648130	rs114390074	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2q11.2		rs114390074-?	NR	1E-5		0.6583493	[0.37-0.95] unit decrease	Illumina [9901720] (imputed)	N
1360	chr2	101661895	101661896	rs67648215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q11.2		rs67648215-T	NR	8E-13		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1360	chr2	101668856	101668857	rs2278729	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	2q11.2	TBC1D8	rs2278729-A	0.33	1E-7	(NSA, men)	0.19	[NR] unit decrease	Affymetrix [433510]	N
1360	chr2	101689725	101689726	rs13032971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q11.2	TBC1D8	rs13032971-G	0.321728	1E-10		0.015449624	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1360	chr2	101691592	101691593	rs4850959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q11.2		rs4850959-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1360	chr2	101691979	101691980	rs143059304	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TBC1D8	rs143059304-?	NR	4E-9	(female)	0.52777	[NR] unit increase	Affymetrix [NR] (imputed)	N
1360	chr2	101698781	101698782	rs6543017	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	2q11.2	NR	rs6543017-?	NR	7E-6	(Cbfore)	0.252	[NR] unit decrease	Illumina [NR] (imputed)	N
1360	chr2	101699593	101699594	rs2309938	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	2q11.2		rs2309938-?	NR	1E-6				Illumina [1365315]	N
1360	chr2	101699593	101699594	rs2309938	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function	131 Chinese ancestry dizygotic twin pairs	NA	2q11.2		rs2309938-?	NR	1E-5				Illumina [1365315]	N
1360	chr2	101705344	101705345	rs76444744	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	2q11.2	TBC1D8	rs76444744-T	0.0037	6E-7	(EA)	0.5354	[0.33-0.74] unit increase	Illumina [~ 9000000] (imputed)	N
1361	chr2	101734932	101734933	rs2919691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q11.2	TBC1D8	rs2919691-C	0.624454	1E-15		0.018346824	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101734932	101734933	rs2919691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q11.2	TBC1D8	rs2919691-C	0.62446	5E-14		0.017175522	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1361	chr2	101735275	101735276	rs796056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q11.2		rs796056-C	NR	7E-16		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1361	chr2	101735275	101735276	rs796056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs796056-C	0.656902	6E-26				Affymetrix, Illumina [24649327] (imputed)	N
1361	chr2	101735275	101735276	rs796056	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q11.2	NR	rs796056-C	0.623451	2E-27		0.020577	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1361	chr2	101735833	101735833	rs5832950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q11.2	TBC1D8	rs5832950-CT	0.628146	2E-24		0.023387073	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101735837	101735838	rs2309996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs2309996-G	0.646341	2E-27				Affymetrix, Illumina [23114412] (imputed)	N
1361	chr2	101735837	101735838	rs2309996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q11.2	NR	rs2309996-G	0.62485	4E-30		0.023127	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1361	chr2	101748263	101748264	rs7594025	29130521	Christopher L	2017-11-11	Ann Neurol	A variant in PPP4R3A protects against alzheimer-related metabolic decline.	Decline in glucose metabolism in posterior cingulate cortex	335 European ancestry MCI cases, 79 European ancestry AD cases, 192 European ancestry controls	NA	2q11.2	TBC1D8	rs7594025-?	NR	1E-6		1.564	[0.94-2.18] unit increase	Illumina [2820932] (imputed)	N
1361	chr2	101769916	101769917	rs7571554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q11.2	TBC1D8, RP11-299H21.1	rs7571554-G	0.637482	8E-12		0.015916767	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101776931	101776932	rs7575217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q11.2	TBC1D8	rs7575217-G	0.6725	6E-9		0.02222061	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr2	101776931	101776932	rs7575217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q11.2	TBC1D8	rs7575217-G	0.6725	1E-9		0.02341332	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr2	101776931	101776932	rs7575217	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q11.2	TBC1D8	rs7575217-G	0.6725	3E-9		0.02268867	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1361	chr2	101777380	101777381	rs7564652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q11.2	TBC1D8	rs7564652-G	0.67338	5E-11		0.015679102	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101777380	101777381	rs7564652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q11.2	TBC1D8	rs7564652-G	0.673334	4E-10		0.014865442	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101778318	101778319	rs733830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q11.2		rs733830-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1361	chr2	101778730	101778734	rs3841079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q11.2	TBC1D8	rs3841079-A	0.674278	4E-14		0.018405763	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1361	chr2	101778741	101778745	rs146872216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q11.2		rs146872216-A	NR	4E-18		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1361	chr2	101821933	101821934	rs1192824	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	2q11.2	TBC1D8, CNOT11	rs1192824-C	NR	6E-9		5.82	NR z score increase	Illumina [7839440] (imputed)	N
1362	chr2	101922169	101922170	rs6711606	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q11.2	RNF149	rs6711606-A	0.12	4E-6	(recessive)	2.81	[1.81-4.37]	Illumina [420236]	N
1362	chr2	101922879	101922880	rs17190440	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q11.2		rs17190440-A	NR	6E-6		3.5611	[2.06-5.06] unit increase	Illumina [NR] (imputed)	N
1362	chr2	101972331	101972332	rs6754354	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q11.2	RNF149	rs6754354-?	NR	9E-6	(3-hydroxyanthranilic acid)	0.21706262	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1363	chr2	101983661	101983662	rs4352251	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels (BMI-adjusted)	737 European ancestry females	NA	2q11.2	CREG2	rs4352251-?	NR	2E-6				Illumina [up to 550000]	N
1363	chr2	101983661	101983662	rs4352251	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels	737 European ancestry females	NA	2q11.2	CREG2	rs4352251-?		3E-6				Illumina [up to 550000]	N
1363	chr2	102027550	102027551	rs575341547	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q11.2		rs575341547-A	NR	9E-7		0.64701		Affymetrix, Illumina [62056310] (imputed)	N
1363	chr2	102028128	102028129	rs17804607	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q11.2		rs17804607-A	NR	2E-6		4.0006	[2.41-5.59] unit increase	Illumina [NR] (imputed)	N
1363	chr2	102029645	102029646	rs12620464	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	2q11.2	NR	rs12620464-?	0.143	1E-6		1.397	[1.221-1.579] unit increase	Illumina [563945]	N
1363	chr2	102046830	102046831	rs6543051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q11.2		rs6543051-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1363	chr2	102062699	102062700	rs10191662	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q11.2		rs10191662-C	0.842395183	8E-6		0.016231336	[0.0091-0.0234] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1363	chr2	102064444	102064445	rs4851446	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q11.2		rs4851446-A	0.844280796	8E-6		0.016245607	[0.0091-0.0234] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1363	chr2	102083182	102083183	rs4851455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q11.2		rs4851455-C	NR	1E-26		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1363	chr2	102088369	102088370	rs4629180	29253858	Bohman A	2017-12-18	PLoS One	A family-based genome-wide association study of chronic rhinosinusitis with nasal polyps implicates several genes in the disease pathogenesis.	Chronic rhinosinusitis with nasal polyps	406 European ancestry cases, 376 European ancestry controls (first degree relatives)	NA	2q11.2	NR	rs4629180-G	NR	1E-6				Illumina [233409]	N
1364	chr2	102111942	102111943	rs13390891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs13390891-C	NR	3E-22		0.0253	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1364	chr2	102111942	102111943	rs13390891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q11.2	NR	rs13390891-C	NR	9E-18		0.0224	[0.017-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1364	chr2	102115329	102115330	rs4499445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q11.2		rs4499445-T	NR	1E-16		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1364	chr2	102120576	102120578	rs67682358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q11.2	intergenic	rs67682358-CAA	0.366456	9E-17		0.019568577	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1364	chr2	102120855	102120856	rs10193098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q11.2		rs10193098-A	0.66854	1E-11		0.015932728	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1364	chr2	102125929	102125930	rs290773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs290773-A	0.344572	8E-23				Affymetrix, Illumina [23467995] (imputed)	N
1364	chr2	102125929	102125930	rs290773	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q11.2	NR	rs290773-A	0.344973	4E-24		0.019984	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1364	chr2	102132182	102132183	rs11304865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q11.2		rs11304865-A	NR	3E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1364	chr2	102154763	102154764	rs12613485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs12613485-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1364	chr2	102177232	102177233	rs1605857	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	2q11.2	NR	rs1605857-C	0.395	4E-6		0.1423	[0.082-0.203] unit decrease	Illumina [10677593] (imputed)	N
1364	chr2	102192077	102192078	rs4850980	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2q11.2	NR	rs4850980-?	NR	4E-10	(ST2)	0.418926	[0.29-0.55] unit increase	Illumina [11901634] (imputed)	N
1365	chr2	102287834	102287835	rs13022699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q11.2	NR	rs13022699-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1365	chr2	102287834	102287835	rs13022699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q11.2	NR	rs13022699-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1365	chr2	102287834	102287835	rs13022699	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q11.2	NR	rs13022699-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1365	chr2	102287834	102287835	rs13022699	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q11.2	IL1R2, LINC01127, MAP4K4	rs13022699-C	0.924552	8E-13		1.0897982	[1.07-1.11]	Affymetrix [8274727] (imputed)	N
1365	chr2	102294492	102294492	rs10690684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q11.2	intergenic	rs10690684-C	0.485417	5E-9		0.013311611	[0.0088-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1365	chr2	102295428	102295429	rs62155147	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q11.2		rs62155147-T	NR	9E-6		3.1274	[1.78-4.48] unit increase	Illumina [NR] (imputed)	N
1365	chr2	102301588	102301589	rs12475173	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q11.2		rs12475173-A	0.29	1E-11		6.79	z score increase	Affymetrix [9061022] (imputed)	N
1365	chr2	102315932	102315933	rs6543087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q11.2		rs6543087-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1365	chr2	102353257	102353258	rs7605411	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	2q11.2	NR	rs7605411-?	NR	3E-8	(Bacteroides_nordii)	0.690405	[0.45-0.93] unit increase	Illumina [5293637] (imputed)	N
1365	chr2	102358333	102358334	rs6650791	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q11.2		rs6650791-C	0.29	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
1365	chr2	102358333	102358334	rs6650791	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q11.2		rs6650791-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1365	chr2	102363168	102363169	rs115567723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs115567723-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1366	chr2	102372130	102372131	rs6543094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q11.2	MAP4K4	rs6543094-C	0.771887	5E-14		0.019796561	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1366	chr2	102385235	102385236	rs55916478	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q11.2	NR	rs55916478-C	0.05575	1E-8	(TOMM70)	0.01054	NR unit increase	Illumina [1671387] (imputed)	N
1366	chr2	102396962	102396963	rs11683001	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2q11.2	MAP4K4	rs11683001-A	0.337	8E-13		0.0705	[0.051-0.09] unit increase	NR [7784415] (imputed)	N
1366	chr2	102404973	102404974	rs111955202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs111955202-?	NR	1E-23				NR [~ 8900000] (imputed)	N
1366	chr2	102413115	102413116	rs34043159	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	2q11.2	IL1R2	rs34043159-C	0.352	5E-11		1.08	[1.06-1.10]	Illumina [11933700] (imputed)	N
1366	chr2	102426139	102426140	rs12468899	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	2q11.2	MAP4K4	rs12468899-G	0.69	2E-7		1.12	[1.09-1.16]	Illumina [2387926] (imputed)	N
1366	chr2	102463653	102463654	rs76842062	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Waist circumference adjusted for body mass index	5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American males, 758 African American males, 4,281 European ancestry males	2q11.2		rs76842062-T	0.992	3E-7		3.066	[1.89-4.24] unit increase	Illumina [NR] (imputed)	N
1366	chr2	102473725	102473726	rs77657034	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	2q11.2	MAP4K4	rs77657034-G	0.9924	5E-6		6.912992	[3.02-10.81]	Affymetrix, Illumina [2928658] (imputed)	N
1367	chr2	102539937	102539937	rs34400020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q11.2		rs34400020-TG	0.730241	8E-10		0.015306012	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1367	chr2	102541079	102541080	rs11693537	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q11.2	NR	rs11693537-G	0.580385	3E-12		0.0140196	[0.01-0.018] unit decrease	NR [NR]	N
1367	chr2	102579016	102579017	rs74538397	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q11.2	NR	rs74538397-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1367	chr2	102585890	102585891	rs6742301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q11.2		rs6742301-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1367	chr2	102603924	102603925	rs35789178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q11.2	NR	rs35789178-G	0.204533	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
1367	chr2	102604501	102604502	rs62154576	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q11.2	NR	rs62154576-A	0.03833	1E-8	(TOMM70)	0.01213	NR unit increase	Illumina [1671387] (imputed)	N
1367	chr2	102604648	102604649	rs12467316	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	2q11.2	IL1R2	rs12467316-A		5E-7		0.0753	[0.046-0.105] unit increase	Illumina [NR]	N
1367	chr2	102604648	102604649	rs12467316	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2q11.2	NR	rs12467316-?	NR	2E-9	(ST2)	0.312917	[0.21-0.41] unit increase	Illumina [11901634] (imputed)	N
1367	chr2	102613012	102613013	rs4321386	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	2q11.2	NR	rs4321386-G	0.34	9E-8	(Testosterone)			Illumina [709211]	N
1367	chr2	102616977	102616978	rs7561191	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1R2	5,362 Icelandic ancestry individuals	NA	2q11.2		rs7561191-A	0.4324	1E-104		0.394318	[0.36-0.43] unit decrease	Illumina [7506463] (imputed)	N
1367	chr2	102616994	102616995	rs7570441	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	IL 1RII plasma levels	400 French ancestry individuals	NA	2q11.2		rs7570441-G	NR	2E-9		0.125	[0.086-0.164] ng/mL decrease	Illumina [5201092] (imputed)	N
1367	chr2	102617203	102617204	rs7561460	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q11.2	IL1R2	rs7561460-T	0.56734375	7E-55	(IL1R2, 14133_93_3)	0.38080236	[0.33-0.43] unit increase	Illumina [> 1000000] (imputed)	N
1367	chr2	102617203	102617204	rs7561460	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q11.2	IL1R2	rs7561460-C	0.396	6E-62	(Interleukin-1 receptor type 2, IL1R2.14133.93.3)	0.4	[0.36-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
1368	chr2	102647299	102647300	rs4851529	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q11.2	IL1R2	rs4851529-?	NR	1E-14	(subset analysis)			Illumina [130052]	N
1368	chr2	102647299	102647300	rs4851529	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q11.2	IL1R2, IL1R1	rs4851529-G	0.609	1E-7		1.1		Illumina [128935]	N
1368	chr2	102647299	102647300	rs4851529	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q11.2	IL1R2, IL1R1	rs4851529-G	0.609	1E-6	(EA)	1.1		Illumina [128935]	N
1368	chr2	102662887	102662888	rs10185424	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q11.2	NR	rs10185424-A	0.4604	1E-14	(EA)	1.1014192	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1368	chr2	102662887	102662888	rs10185424	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q11.2	NR	rs10185424-A	0.4604	3E-9	(EA)	1.0748146	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1368	chr2	102663627	102663628	rs2310173	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q11.2	MAP4K4, IL1R2	rs2310173-T		3E-6	(Modelling analysis)	1.06	[1.03-1.08]	NR [1252901] (imputed)	N
1368	chr2	102663627	102663628	rs2310173	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q11.2	IL1R2	rs2310173-T	0.46	3E-12		1.09	[1.05-1.14]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1368	chr2	102663627	102663628	rs2310173	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2q11.2	IL1R2	rs2310173-A	0.45	5E-7		1.18	[1.10-1.27]	Illumina [288662]	N
1368	chr2	102680600	102680601	rs7604529	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	2q11.2		rs7604529-A	0.86	2E-23		0.1119	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1368	chr2	102689030	102689031	rs13427957	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q11.2	IL1R1	rs13427957-T	0.425702	2E-8		1.0356257	[1.02-1.05]	Affymetrix [8274727] (imputed)	N
1368	chr2	102707178	102707179	rs10199359	27670397	Reyes-Gibby CC	2016-09-27	Sci Rep	Genome-wide association study suggests common variants within RP11-634B7.4 gene influencing severe pre-treatment pain in head and neck cancer patients.	Pre-treatment pain in head and neck squamous cell carcinoma	148 European ancestry cases, 810 European ancestry controls	58 European ancestry cases, 352 European ancestry controls	2q11.2	NR	rs10199359-G	0.18	3E-6		1.64	[1.33-2.02]	Illumina [714494]	N
1368	chr2	102709481	102709482	rs71415340	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2q11.2	IL1R1	rs71415340-?	NR	2E-9		0.0385	[0.026-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1368	chr2	102726660	102726661	rs12712127	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q12.1	IL1R1, IL1R2	rs12712127-A	0.41	3E-8	(EA)	0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
1368	chr2	102728715	102728716	rs1861283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q12.1		rs1861283-T	NR	6E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1368	chr2	102729873	102729874	rs874953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs874953-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1368	chr2	102731595	102731596	rs1007027	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs1007027-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1368	chr2	102731690	102731691	rs1558643	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		2q12.1	IL1R2, IL1R1	rs1558643-?	NR	6E-10		0.0066	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1368	chr2	102731690	102731691	rs1558643	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		2q12.1	IL1R2, IL1R1	rs1558643-?	NR	6E-10		0.0063	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1368	chr2	102731690	102731691	rs1558643	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	2q12.1	IL1R1	rs1558643-T	0.4	3E-10		0.0058	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1368	chr2	102732487	102732488	rs150946191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs150946191-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1368	chr2	102735705	102735706	rs1004548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs1004548-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
1368	chr2	102736866	102736867	rs12328681	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	2q12.1	NR	rs12328681-T	NR	2E-9		0.2393	[0.16-0.32] unit decrease	Illumina [up to 525976] (imputed)	N
1368	chr2	102740458	102740459	rs4851541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q12.1		rs4851541-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1368	chr2	102744853	102744854	rs9284725	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2q12.1	IL1R1	rs9284725-C	0.24	7E-11		0.027	[0.019-0.035] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1368	chr2	102746275	102746276	rs7588201	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL1R1	rs7588201-A	0.72234375	3E-10	(IL1R1, 2991_9_2)	0.1632023	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1368	chr2	102747312	102747313	rs1024794	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q12.1	IL1R1	rs1024794-G	0.35	1E-8		5.73	z-score increase	Affymetrix [4312306] (imputed)	N
1368	chr2	102751649	102751650	rs6759556	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	2q12.1	IL1R1	rs6759556-A	NR	8E-6		4.478	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1368	chr2	102757138	102757139	rs4141632	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	2q12.1	IL1R2	rs4141632-A	0.24	1E-9	(BMI-adjusted)	0.028	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1368	chr2	102759292	102759293	rs1800919	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q12.1	NR	rs1800919-A	0.236563	4E-18		0.0209994	[0.016-0.026] unit increase	NR [NR]	N
1369	chr2	102769372	102769373	rs2192752	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q12.1	IL1R2, IL1R1	rs2192752-C	0.222	4E-6	(conditioned on rs4851529, EA)	1.11		Illumina [128935]	N
1369	chr2	102771281	102771282	rs871656	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q12.1	IL1R1	rs871656-?	NR	1E-9	(subset analysis)			Illumina [130052]	N
1369	chr2	102776201	102776202	rs13019803	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1R1	rs13019803-T	0.11	6E-20		0.14	[0.1-0.18] unit decrease	Affymetrix [2500000] (imputed)	N
1369	chr2	102776517	102776518	rs3917254	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL1R1	rs3917254-A	0.09959759	1E-11	(EA, Interleukin-1 receptor-like 1)	0.4395	[0.31-0.57] unit decrease	Affymetrix [509946]	N
1369	chr2	102778460	102778461	rs3917265	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RL2	5,329 Icelandic ancestry individuals	NA	2q12.1		rs3917265-T	0.4375	7E-60		0.269347	[0.24-0.3] unit increase	Illumina [7506463] (imputed)	N
1369	chr2	102778460	102778461	rs3917265	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL1RL2	rs3917265-T	0.445625	9E-32	(IL1RL2, 2994_71_2)	0.28255102	[0.24-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1369	chr2	102778460	102778461	rs3917265	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2q12.1	IL18RAP	rs3917265-C	0.53	9E-7	(conditional on rs6419573)	1.06	[1.03-1.08]	Illumina [15539996] (imputed)	N
1369	chr2	102781648	102781649	rs2228139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	IL1RL2	rs2228139-G	0.069	2E-18	(Interleukin-1 receptor-like 2, IL1RL2.2994.71.2)	0.42	[0.32-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1369	chr2	102782223	102782224	rs3917339	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs3917339-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102784573	102784574	rs13020778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q12.1		rs13020778-T	0.591	4E-16				Affymetrix [10369434] (imputed)	N
1369	chr2	102795862	102795863	rs3917329	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RL2	5,329 Icelandic ancestry individuals	NA	2q12.1		rs3917329-T	0.06948	3E-42		0.439195	[0.38-0.5] unit decrease	Illumina [7506463] (imputed)	N
1369	chr2	102798244	102798245	rs74180212	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q12.1	IL1R1, IL1RL2	rs74180212-G	0.439	3E-8		1.061	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1369	chr2	102798244	102798245	rs74180212	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q12.1	IL1R1, IL1RL2	rs74180212-?	NR	5E-37		1.101	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
1369	chr2	102798244	102798245	rs74180212	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL1R1, IL1RL2	rs74180212-G	NR	1E-19		1.067	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
1369	chr2	102800229	102800230	rs4851551	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL1R1, AC007271.3, IL1RL2	rs4851551-A	0.07128514	6E-12	(EA, Interleukin-1 receptor-like 2)	0.5734	[0.41-0.73] unit decrease	Affymetrix [509946]	N
1369	chr2	102810167	102810168	rs1558648	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL2	rs1558648-G	0.12	4E-16		0.13	[0.091-0.169] unit decrease	Affymetrix [2500000] (imputed)	N
1369	chr2	102828816	102828817	rs1922291	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL1RL2	rs1922291-A	0.3980924	1E-14	(EA, Interleukin-1 receptor-like 2)	0.3406	[0.26-0.43] unit increase	Affymetrix [509946]	N
1369	chr2	102842123	102842124	rs2302621	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs2302621-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102842664	102842665	rs13416449	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs13416449-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102844248	102844249	rs1997502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs1997502-?	NR	5E-82				NR [~ 8900000] (imputed)	N
1369	chr2	102851707	102851708	rs2302612	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL2	rs2302612-C	0.17	2E-11		0.08	[0.06-0.1] unit decrease	Affymetrix [2500000] (imputed)	N
1369	chr2	102852801	102852802	rs10167431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs10167431-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102852801	102852802	rs10167431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs10167431-?	NR	8E-17				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102852801	102852802	rs10167431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs10167431-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
1369	chr2	102857738	102857739	rs185815317	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2q12.1	IL1RL2	rs185815317-T	0.004	1E-6		8.34	[3.55-19.59]	Illumina [7959153] (imputed)	N
1369	chr2	102865874	102865875	rs9646944	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL1RL2, FAM183DP	rs9646944-C	0.2018072	3E-12	(EA, Interleukin-18 receptor 1)	0.3656	[0.26-0.47] unit decrease	Affymetrix [509946]	N
1369	chr2	102866272	102866273	rs12712133	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	2q12.1	IL1RL2, IL1R1, FAM183DP, IL1RL1, IL18R1, LOC100422339, IL18RAP, MIR4772	rs12712133-A	NR	5E-9		1.14	[1.07-1.21]	Illumina [1143634] (imputed)	N
1369	chr2	102875586	102875587	rs1345301	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2q12.1	IL1RL1, IL1RL2	rs1345301-A	0.75	5E-6	(men)	0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
1369	chr2	102879463	102879464	rs10189629	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	2q12.1	IL1RL1	rs10189629-C	NR	8E-12		1.4	[1.27-1.54]	Illumina [up to 525976] (imputed)	N
1369	chr2	102879463	102879464	rs10189629	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2q12.1	IL1RL1, IL1RL2	rs10189629-A	0.1450	2E-16		0.1448	[0.11-0.18] unit decrease	Illumina [2400000] (imputed)	N
1369	chr2	102882351	102882352	rs78545931	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q12.1	IL1RL2, IL18R1	rs78545931-A	0.979	1E-12		1.228	[1.17-1.28]	Affymetrix [9000000] (imputed)	N
1369	chr2	102882351	102882352	rs78545931	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q12.1	IL1RL2, IL18R1	rs78545931-?	NR	9E-59		1.398	[1.36-1.44]	Affymetrix [9000000] (imputed)	N
1369	chr2	102882351	102882352	rs78545931	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL1RL2, IL18R1	rs78545931-A	NR	2E-28		1.235	[1.2-1.27]	Affymetrix [9000000] (imputed)	N
1369	chr2	102883617	102883618	rs1882510	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	NR	rs1882510-?	NR	1E-26	(EA, Interleukin-18 receptor 1)			Affymetrix [509946]	N
1370	chr2	102892338	102892339	rs60227565	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q12.1	IL1RL2, IL18R1	rs60227565-G	0.865	7E-27		1.177	[1.15-1.21]	Affymetrix [9000000] (imputed)	N
1370	chr2	102892338	102892339	rs60227565	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	2q12.1	IL1RL2, IL18R1	rs60227565-?	NR	1E-32		1.125	[1.11-1.14]	Affymetrix [9000000] (imputed)	N
1370	chr2	102892338	102892339	rs60227565	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL1RL2, IL18R1	rs60227565-G	NR	5E-71		1.195	[1.18-1.21]	Affymetrix [9000000] (imputed)	N
1370	chr2	102913642	102913642	rs202011557	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	2q12.1	IL1RL2, IL1RL1	rs202011557-?	NR	5E-31		1.1876484	[1.15-1.22]	Illumina [13747813] (imputed)	N
1370	chr2	102914653	102914654	rs10515922	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q12.1	IL1RL1, IL1RL2, IL18R1, IL18RAP, MIR4772	rs10515922-G	0.09743	8E-9		1.0606513	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
1370	chr2	102915661	102915662	rs11693697	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q12.1	NR	rs11693697-T	0.80779	2E-8		0.0155368	[0.01-0.021] unit increase	NR [NR]	N
1370	chr2	102915661	102915662	rs11693697	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs11693697-C	0.22	7E-11		0.08	[0.06-0.1] unit decrease	Affymetrix [2500000] (imputed)	N
1370	chr2	102917995	102917995	rs34644791	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2q12.1	NR	rs34644791-?	NR	8E-47	(ST2)	0.708926	[0.61-0.81] unit decrease	Illumina [11901634] (imputed)	N
1370	chr2	102918931	102918934	rs200094563	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	2q12.1	NR	rs200094563-?	NR	4E-6		0.0269	[0.016-0.038] unit increase	Illumina [at least 560000] (imputed)	N
1370	chr2	102921782	102921783	rs10179654	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	IL1RL1	rs10179654-G	0.521	3E-391	(Interleukin-1 receptor-like 1, IL1RL1.4234.8.2)	0.85	[0.81-0.89] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	2q12.1	IL1RL1, IL18R1, IL1RL2, IL18RAP, MIR4772, IL1R1	rs12470864-A	0.38851	8E-43		1.09217	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs12470864-?	NR	3E-28				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	2q12.1	IL1RL2, IL18R1	rs12470864-?	NR	1E-31		1.089	[1.08-1.1]	Affymetrix [9000000] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL1RL2, IL18R1	rs12470864-A	NR	2E-56		1.117	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q12.1	IL1RL1	rs12470864-A	0.3854	1E-16		0.0203	[0.016-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q12.1	IL1RL1	rs12470864-A	0.3854	3E-6		0.0112	[0.0065-0.0159] unit decrease	Affymetrix [19819130] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q12.1	IL1RL2, IL18R1	rs12470864-A	0.35	4E-26		1.057	[1.05-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
1370	chr2	102926361	102926362	rs12470864	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	NR	rs12470864-?	NR	3E-69	(EA, Interleukin-1 receptor-like 1)			Affymetrix [509946]	N
1370	chr2	102928616	102928617	rs72823628	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	2q12.1		rs72823628-?	NR	1E-25		0.86	[0.84-0.89]	Illumina [5170515] (imputed)	N
1370	chr2	102928616	102928617	rs72823628	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	2q12.1	IL18R1	rs72823628-G	0.874	3E-33		0.076	[0.064-0.088] unit decrease	NR [NR] (imputed)	N
1370	chr2	102928616	102928617	rs72823628	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2q12.1	IL18R1	rs72823628-G	0.874	2E-33		0.076	[0.064-0.088] unit decrease	NR [7647814] (imputed)	N
1370	chr2	102930947	102930948	rs12712135	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL1RL1, IL18R1	rs12712135-A	0.4598394	4E-76	(Interleukin-1 receptor-like 1)	0.6838	[0.62-0.75] unit increase	Affymetrix [509946]	N
1370	chr2	102931825	102931826	rs13020553	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	2q12.1		rs13020553-C	0.63	7E-1635		0.6377	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1370	chr2	102931825	102931826	rs13020553	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q12.1	NR	rs13020553-G	0.3884	2E-33		1.076	[1.064-1.088]	Affymetrix [15688218] (imputed)	N
1370	chr2	102932511	102932512	rs950881	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	2q12.1	IL1RL1	rs950881-G	0.8525	2E-30		1.1363636	[1.11-1.15]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
1370	chr2	102932511	102932512	rs950881	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	2q12.1	IL1RL1	rs950881-?	NR	6E-27		1.1235955	[1.1-1.15]	Illumina [12845910] (imputed)	N
1370	chr2	102932561	102932562	rs950880	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	2q12.1	NR	rs950880-?	NR	2E-23	(conditional)			Affymetrix [15688218] (imputed)	N
1370	chr2	102932561	102932562	rs950880	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs950880-A	0.39	7E-94		0.18	[0.16-0.20] unit decrease	Affymetrix [2500000] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	2q12.1		rs72823641-A	NR	1E-33		0.1647	[0.14-0.19] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	2q12.1	IL1RL1	rs72823641-A	0.13665032735749	3E-53		0.14784147	[0.13-0.17] unit decrease	Affymetrix [35186738] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	2q12.1	IL1RL1, IL18R1, IL1RL2, IL18RAP, MIR4772, IL1R1	rs72823641-T	0.86336	4E-51		1.1539615	[1.14-1.18]	Affymetrix [32463443] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs72823641-?	NR	7E-60				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q12.1	IL1R1, IL1R2, IL1RL1, IL1RL2, IL18R1, IL18RAP, LINC01127, MAP4K4, MIR4772, SLC9A2, SLC9A4	rs72823641-T	0.863223	2E-60		1.1581235	[1.14-1.18]	Affymetrix [8274727] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q12.1	NR	rs72823641-T	0.8633	1E-63		1.1611705	[1.14-1.18]	Affymetrix [15688218] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	2q12.1	IL1RL1, IL18R1	rs72823641-A	0.1367	4E-61				Affymetrix [15688218] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	2q12.1	IL1RL1, IL18R1	rs72823641-T	0.8651	2E-25		1.1930327	[1.16-1.23]	Affymetrix [15688218] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q12.1	NR	rs72823641-T	0.8633	1E-78		1.1645511	[1.15-1.18]	Affymetrix [15688218] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	2q12.1	IL1RL1, IL1RL2, IL18R1	rs72823641-T	0.863	3E-46		1.415	[1.349-1.484]	Affymetrix [10894596] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	2q12.1	IL1RL1, IL1RL2, IL18R1	rs72823641-T	0.863	4E-12		1.109	[1.077-1.142]	Affymetrix [10894596] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q12.1	IL18R1	rs72823641-T	0.857	9E-30		1.185	[1.16-1.21]	Affymetrix [9000000] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q12.1	IL18R1	rs72823641-?	NR	2E-136		1.305	[1.28-1.33]	Affymetrix [9000000] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL18R1	rs72823641-T	NR	5E-76		1.196	[1.18-1.22]	Affymetrix [9000000] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2q12.1	IL1R1, IL1RL1, IL1RL2, IL18R1, IL18RAP, MIR4772, SLC9A2, SLC9A4	rs72823641-?	NR	2E-27		1.1235955		NR [74888535] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma	14,085 European ancestry cases, 76,768 European ancestry controls	10,365 cases, 16,110 controls	2q12.1	IL1R1	rs72823641-?	NR	7E-18		0.170195	[0.13-0.21] unit decrease	Affymetrix [74888535] (imputed)	N
1370	chr2	102936158	102936159	rs72823641	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2q12.1	IL1R1, IL1RL1, IL1RL2, IL18R1, IL18RAP, MIR4772, SLC9A2, SLC9A4	rs72823641-?	NR	4E-24		1.1627907	[1.14-1.2]	Affymetrix [74888535] (imputed)	N
1370	chr2	102939035	102939036	rs13001325	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q12.1	IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, IL1R2, IL1R1	rs13001325-?		5E-11				Illumina [9725440] (imputed)	N
1370	chr2	102939035	102939036	rs13001325	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q12.1	IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, IL1R2, IL1R1	rs13001325-?		6E-11				Illumina [9560910] (imputed)	N
1370	chr2	102941008	102941009	rs11679889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q12.1	IL18R1, IL1RL1	rs11679889-A	0.299819	4E-60		0.043138813	[0.038-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr2	102941008	102941009	rs11679889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q12.1	IL18R1, IL1RL1	rs11679889-A	0.299826	7E-14		0.02479837	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr2	102941310	102941311	rs10865050	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2q12.1	NR	rs10865050-?	0.874	4E-33		0.075	[0.063-0.087] unit decrease	NR [7647814] (imputed)	N
1370	chr2	102941310	102941311	rs10865050	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q12.1	IL18R1	rs10865050-G	0.85	7E-61		1.13	[1.12-1.14]	Affymetrix, Illumina [8307659] (imputed)	N
1370	chr2	102941337	102941338	rs11676124	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	ST2 plasma levels	400 French ancestry individuals	NA	2q12.1		rs11676124-C	NR	2E-20		0.255	[0.21-0.3] ng/mL increase	Illumina [5201092] (imputed)	N
1370	chr2	102941337	102941338	rs11676124	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RL1	5,361 Icelandic ancestry individuals	NA	2q12.1		rs11676124-T	0.3477	1E-296		0.605814	[0.57-0.64] unit increase	Illumina [7506463] (imputed)	N
1370	chr2	102941337	102941338	rs11676124	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL1RL1	rs11676124-C	0.644375	9E-166	(IL1RL1, 4234_8_2)	0.6170812	[0.58-0.66] unit decrease	Illumina [> 1000000] (imputed)	N
1370	chr2	102942919	102942920	rs58933240	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	NR	rs58933240-C	0.359	4E-213	(Interleukin-1 receptor-like 1, IL1RL1.4234.8.2)	0.8	[0.74-0.86] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102944245	102944246	rs59185885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs59185885-?	NR	1E-39				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102944245	102944246	rs59185885	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs59185885-?	NR	5E-27				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102944245	102944246	rs59185885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2q12.1		rs59185885-?	NR	1E-59				NR [~ 8900000] (imputed)	N
1370	chr2	102944245	102944246	rs59185885	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q12.1		rs59185885-?	NR	4E-79				NR [~ 8900000] (imputed)	N
1370	chr2	102945415	102945416	rs76886731	25642632	Liu H	2015-02-02	Nat Genet	Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.	Leprosy	1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases	6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls	2q12.1	IL18R1, IL18RAP	rs76886731-T	0.448	2E-23		1.24	[NR]	Illumina [4577171] (imputed)	N
1370	chr2	102948631	102948632	rs1420103	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs1420103-A	0.23	1E-35		0.13	[0.11-0.15] unit increase	Affymetrix [2500000] (imputed)	N
1370	chr2	102949160	102949161	rs12479210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	2q12.1		rs12479210-T	NR	2E-12		0.1461	[0.11-0.19] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
1370	chr2	102949160	102949161	rs12479210	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs12479210-?	NR	2E-37				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102949160	102949161	rs12479210	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs12479210-?	NR	3E-33				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102949160	102949161	rs12479210	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	2q12.1	IL1RL1	rs12479210-T	0.3873	2E-29		1.19	[1.16-1.23]	Affymetrix [33771858] (imputed)	N
1370	chr2	102950821	102950822	rs13019081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	2q12.1		rs13019081-C	NR	3E-17		0.0729	[0.056-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1370	chr2	102953443	102953444	rs17639215	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs17639215-A	0.13	2E-30		0.15	[0.13-0.17] unit increase	Affymetrix [2500000] (imputed)	N
1370	chr2	102953616	102953617	rs3771180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q12.1	IL1RL1	rs3771180-T	0.138363	1E-25		0.041495603	[0.034-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr2	102953616	102953617	rs3771180	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q12.1	IL1RL1	rs3771180-G	0.86	6E-116				NR [> 9500000] (imputed)	N
1370	chr2	102953616	102953617	rs3771180	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	2q12.1	IL1RL1, IL1RL, IL18R1	rs3771180-T	0.14	2E-20		0.17	[0.13-0.21] unit decrease	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1370	chr2	102953616	102953617	rs3771180	21804549	Torgerson DG	2011-07-31	Nat Genet	Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.	Asthma	2,088 European ancestry cases, 1,612 African American and African Caribbean cases, 1,688 Hispanic cases	2,727 European ancestry cases, 2,147 African American and African Caribbean cases, 2,299 Hispanic cases	2q12.1	IL1RL1	rs3771180-?	NR	2E-15				Affymetrix, Illumina [> 2000000] (imputed)	N
1370	chr2	102955081	102955082	rs13408661	23028483	Ramasamy A	2012-09-28	PLoS One	Genome-wide association studies of asthma in population-based cohorts confirm known and suggested loci and identify an additional association near HLA.	Asthma	1,716 European ancestry cases, 16,888 European ancestry controls	4,035 European ancestry cases, 11,251 European ancestry controls	2q12.1	IL18R1, IL1RL1	rs13408661-G	0.84	1E-9		1.23	[1.15-1.31]	Affymetrix, Illumina [~ 2200000] (imputed)	N
1370	chr2	102957290	102957291	rs13029918	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RL1	5,361 Icelandic ancestry individuals	NA	2q12.1		rs13029918-G	0.02369	4E-129		1.36409	[1.25-1.47] unit decrease	Illumina [7506463] (imputed)	N
1370	chr2	102957290	102957291	rs13029918	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	NR	rs13029918-G	0.029	7E-76	(Interleukin-1 receptor-like 1, IL1RL1.4234.8.2)	1.28	[1.14-1.42] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102957290	102957291	rs13029918	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs13029918-G	0.05	2E-39		0.29	[0.25-0.33] unit decrease	Affymetrix [2500000] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	2q12.1		rs1420101-T	0.7095	8E-7		0.0656	[0.04-0.091] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	2q12.1	IL1RL1	rs1420101-T	NR	4E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	30578877	Dahlin A	2018-12-19	J Allergy Clin Immunol	Large-scale, multi-ethnic genome-wide association study identifies novel loci contributing to asthma susceptibility in adults.	Adult asthma	16,274 European ancestry cases, 38,269 European ancestry controls	10,365 European ancestry cases, 16,110 European ancestry controls, cases and controls (see Moffatt et al 2010)	2q12.1	IL1RL1	rs1420101-T	NR	8E-15		1.1	[1.06-1.13]	Affymetrix [7230512] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	2q12.1	IL1RL1, IL1RL2, IL18R1	rs1420101-T	0.37	4E-21		1.12	[1.09-1.15]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls	NA	2q12.1	IL1RL1, IL1RL2, IL18R1	rs1420101-T	0.37	9E-20		0.12	[0.1-0.14] unit increase	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2q12.1	IL1RL1	rs1420101-C	0.63	6E-254		0.58	unit increase	Illumina [5270624] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (eosinophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	2q12.1	NR	rs1420101-A	0.71	5E-6		0.061	[0.036-0.086] unit increase	Illumina [27887661] (imputed)	N
1370	chr2	102957715	102957716	rs1420101	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	2q12.1	IL1RL1	rs1420101-A	0.41	5E-14	(EA)	6.4	[4.7-8.1] % standard unit increase	Illumina [312179]	N
1370	chr2	102960209	102960210	rs3771175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q12.1		rs3771175-A	NR	2E-37		0.1239	[0.1-0.14] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1370	chr2	102960209	102960210	rs3771175	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs3771175-?	NR	8E-50				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102960209	102960210	rs3771175	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	2q12.1	NR	rs3771175-T	0.863	8E-17		1.726	[1.32-2.13] unit decrease	Affymetrix [10894596] (imputed)	N
1370	chr2	102960209	102960210	rs3771175	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	2q12.1	IL18R1, IL1RL1, IL18RAP	rs3771175-T	0.86	5E-11		1.2	[1.14-1.28]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1370	chr2	102960823	102960824	rs2160203	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Allergic rhinitis	13,936 European ancestry cases, 42,701 European ancestry controls	NA	2q12.1		rs2160203-G	0.2451931	3E-9		0.91		Affymetrix [15644656] (imputed)	N
1370	chr2	102960823	102960824	rs2160203	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	2q12.1	IL1RL1	rs2160203-A	0.75	3E-9		1.1494253	[1.1-1.2]	Affymetrix, Illumina [16531985] (imputed)	N
1370	chr2	102963071	102963072	rs6543119	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	2q12.1	NR	rs6543119-?	NR	2E-31	(IL-1 R4)			Illumina [~ 4000000] (imputed)	N
1370	chr2	102963071	102963072	rs6543119	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	2q12.1	IL1RL1	rs6543119-?	NR	6E-25		0.05987	[0.048-0.071] unit increase novel	Illumina [6108953] (imputed)	N
1370	chr2	102964741	102964742	rs13017455	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs13017455-?	NR	6E-29				Affymetrix [~ 8270000] (imputed)	N
1370	chr2	102965391	102965392	rs12999542	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL1RL1	rs12999542-C	0.11	2E-27		0.15	[0.13-0.17] unit decrease	Affymetrix [2500000] (imputed)	N
1370	chr2	102966066	102966067	rs1921622	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q12.1		rs1921622-G	0.458	6E-45				Affymetrix [10369434] (imputed)	N
1370	chr2	102966066	102966067	rs1921622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q12.1	IL18R1, IL1RL1	rs1921622-A	0.541777	3E-20		0.02045066	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr2	102966066	102966067	rs1921622	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q12.1	IL18R1, IL1RL1	rs1921622-A	0.541786	1E-26		0.03046747	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr2	102966066	102966067	rs1921622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q12.1		rs1921622-?	NR	3E-20				NR [~ 8900000] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q12.1		rs10208293-G	0.713	1E-96				Affymetrix [10369434] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q12.1	IL18R1, IL1RL1	rs10208293-A	0.286671	3E-152		0.07049516	[0.065-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	2q12.1	NR	rs10208293-G	0.73	4E-38		1.14		Affymetrix [10894596] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	2q12.1	NR	rs10208293-G	0.73	1E-15				Affymetrix [10894596] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	2q12.1	NR	rs10208293-G	0.73	3E-6		1.14		Affymetrix [10894596] (imputed)	N
1370	chr2	102966309	102966310	rs10208293	27130862	Sarnowski C	2016-04-06	J Allergy Clin Immunol	Identification of a new locus at 16q12 associated with time to asthma onset.	Asthma (time to onset)	5,462 European ancestry cases, 8,424 European ancestry controls	NA	2q12.1	IL1RL1	rs10208293-G	0.73	3E-8		1.14	[1.08-1.19]	Illumina [2387926] (imputed)	N
1370	chr2	102966548	102966549	rs10197862	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q12.1	IL1RL1	rs10197862-A	0.858058	4E-93		1.1916052	[1.17176716187161-1.21177921124935]	NR [9572556] (imputed)	N
1370	chr2	102966548	102966549	rs10197862	26620591	Barreto-Luis A	2015-11-24	J Allergy Clin Immunol	Genome-wide association study in Spanish identifies ADAM metallopeptidase with thrombospondin type 1 motif, 9 (ADAMTS9), as a novel asthma susceptibility gene.	Asthma	352 European ancestry cases, 537 European ancestry controls	828 European ancestry cases, 1,378 European ancestry controls	2q12.1	IL18R1, IL1RL1	rs10197862-?	NR	2E-6		1.99	[NR]	Affymetrix [6467565] (imputed)	N
1370	chr2	102966548	102966549	rs10197862	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	2q12.1	IL1RL1	rs10197862-A	0.85	4E-11		1.24	[1.16-1.32]	Illumina [up to 4972397] (imputed)	N
1370	chr2	102966782	102966783	rs1861246	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,354 Icelandic ancestry individuals	NA	2q12.1		rs1861246-T	0.1841	1E-221		0.681186	[0.64-0.72] unit increase	Illumina [7506463] (imputed)	N
1370	chr2	102966782	102966783	rs1861246	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,351 Icelandic ancestry individuals	NA	2q12.1		rs1861246-T	0.1841	4E-118		0.516851	[0.47-0.56] unit increase	Illumina [7506463] (imputed)	N
1370	chr2	102966782	102966783	rs1861246	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	2q12.1	NR	rs1861246-t	0.217	2E-10		1.12	[1.09-1.15]	Affymetrix, Illumina [16201029] (imputed)	N
1370	chr2	102966782	102966783	rs1861246	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL18R1	rs1861246-C	0.81359375	9E-75	(IL18R1, 3446_7_2)	0.5610656	[0.5-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
1370	chr2	102966782	102966783	rs1861246	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL18R1	rs1861246-C	0.81359375	6E-134	(IL18R1, 14079_14_3)	0.73216105	[0.68-0.79] unit decrease	Illumina [> 1000000] (imputed)	N
1370	chr2	102966905	102966906	rs1861245	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q12.1	IL1RL1	rs1861245-C	0.662	2E-11		1.075	[1.05-1.1]	Affymetrix [9000000] (imputed)	N
1370	chr2	102966905	102966906	rs1861245	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q12.1	IL1RL1	rs1861245-?	NR	2E-69		1.15	[1.13-1.17]	Affymetrix [9000000] (imputed)	N
1370	chr2	102966905	102966906	rs1861245	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q12.1	IL1RL1	rs1861245-C	NR	1E-52		1.117	[1.1-1.13]	Affymetrix [9000000] (imputed)	N
1370	chr2	102968284	102968285	rs4988958	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma (childhood onset)	7,131 European ancestry cases, 13,631 European ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	2q12.1	IL1Rl1, IL1RL2, IL18R1	rs4988958-T	NR	5E-13		1.1764705	[1.12-1.22]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
1370	chr2	102968867	102968867	rs5833013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q12.1	IL18R1	rs5833013-TTA	0.3348	7E-76		0.07169085	[0.064-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1370	chr2	102968867	102968867	rs5833013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q12.1	IL18R1	rs5833013-TTA	0.3349	5E-70		0.06896532	[0.061-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
1370	chr2	102968867	102968867	rs5833013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q12.1	IL18R1	rs5833013-TTA	0.3349	1E-95		0.08053178	[0.073-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1370	chr2	102968867	102968867	rs5833013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q12.1	IL18R1	rs5833013-TTA	0.335	1E-86		0.07691485	[0.069-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1370	chr2	102968867	102968867	rs5833013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q12.1	IL18R1	rs5833013-TTA	0.3348	6E-93		0.07943911	[0.072-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1370	chr2	102969806	102969807	rs67723747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	2q12.1		rs67723747-T	0.382112	8E-35		0.0560032	[0.047-0.065] unit increase	Illumina [13470073] (imputed)	N
1370	chr2	102970815	102970816	rs4311080	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	2q12.1		rs4311080-C	0.63	2E-196		0.243	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1370	chr2	102971164	102971165	rs56386507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	2q12.1	NR	rs56386507-C	0.619755	1E-26		0.05299	[0.043-0.063] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q12.1		rs9807989-C	NR	4E-190		0.054	[0.05-0.058] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q12.1	IL18R1	rs9807989-C	0.322404	5E-48		0.04644552	[0.04-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.1	NR	rs9807989-C	0.3113	6E-305				Affymetrix, Illumina [19872809] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q12.1	NR	rs9807989-C	0.327617	9E-297		0.07986	[0.076-0.084] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs9807989-?	NR	8E-290				NR [~ 8900000] (imputed)	N
1370	chr2	102971199	102971200	rs9807989	22561531	Wan YI	2012-05-05	Thorax	Genome-wide association study to identify genetic determinants of severe asthma.	Asthma	933 European ancestry cases, 3,346 European ancestry controls	231 European ancestry cases, 1,345 European ancestry controls	2q12.1	IL18R1, IL1R1	rs9807989-?	NR	6E-8		1.33	[1.20-1.47]	Illumina [6103628] (imputed)	N
1370	chr2	102971362	102971363	rs13014644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,354 Icelandic ancestry individuals	NA	2q12.1		rs13014644-T	0.08213	1E-48		0.476777	[0.41-0.54] unit decrease	Illumina [7506463] (imputed)	N
1370	chr2	102971362	102971363	rs13014644	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	NR	rs13014644-T	0.103	3E-46	(Interleukin-18 receptor 1, IL18R1.3446.7.2)	0.56	[0.48-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102971362	102971363	rs13014644	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	NR	rs13014644-T	0.103	1E-34	(Interleukin-18 receptor 1, IL18R1.14079.14.3)	0.49	[0.41-0.57] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102971864	102971865	rs13015714	31879220	Lin GW	2019-12-23	Lancet Oncol	Genetic risk of extranodal natural killer T-cell lymphoma: a genome-wide association study in multiple populations.	Extranodal natural killer T-cell lymphoma (nasal type)	700 Han Chinese ancestry cases, 7,752 Han Chinese ancestry controls	717 East Asian ancestry cases, 12,650 East Asian ancestry controls	2q12.1	IL18RAP	rs13015714-G	0.42	3E-16		1.39	[1.28-1.50]	Illumina [3892410] (imputed)	N
1370	chr2	102971864	102971865	rs13015714	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	2q12.1	NR	rs13015714-C	NR	7E-18	(Interleukin-18 receptor 1)			Illumina [514227]	N
1370	chr2	102971864	102971865	rs13015714	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	2q12.1	NR	rs13015714-?	NR	3E-37	(Interleukin-1 receptor-like 1)			Illumina [514227]	N
1370	chr2	102971864	102971865	rs13015714	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2q12.1	IL1RL1, IL18RAP	rs13015714-G	NR	2E-12	(EA, fixed effects)	1.1	[1.07-1.14]	Illumina [15539996] (imputed)	N
1370	chr2	102971864	102971865	rs13015714	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	2q12.1	IL18R1, IL1RL1, IL18RAP	rs13015714-G	0.412	8E-18		1.27	[1.20-1.34]	Illumina [606164]	N
1370	chr2	102971864	102971865	rs13015714	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	2q12.1	IL18R1, IL1RL1, SLC9A4, IL18RAP	rs13015714-C	NR	4E-9		1.28	[1.18-1.39]	Illumina [310605]	N
1370	chr2	102972668	102972668	rs34418941	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	NR	rs34418941-CT	0.469	4E-168	(Interleukin-1 receptor-like 1, IL1RL1.4234.8.2)	0.64	[0.6-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	102974128	102974129	rs12999364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q12.1		rs12999364-T	0.39677204	2E-9		0.0824806	[0.055-0.11] unit increase	Illumina [13429513] (imputed)	N
1370	chr2	102975335	102975336	rs12987977	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q12.1	IL18R1	rs12987977-?	NR	3E-17	(subset analysis)			Illumina [130052]	N
1370	chr2	102979027	102979028	rs2287037	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	2q12.1	IL18R1	rs2287037-T	0.395554	4E-17		0.096040756	[0.074-0.118] unit increase	Affymetrix [7288503] (imputed)	N
1370	chr2	102982702	102982703	rs10197284	25200001	Robinson PC	2014-09-08	Arthritis Rheumatol	Genetic dissection of acute anterior uveitis reveals similarities and differences in associations observed with ankylosing spondylitis.	Acute anterior uveitis (with or without ankylosing spondylitis)	238 European ancestry primary acute anterior uveitis cases, 1,199 European ancestry cases with acute anterior uveitis and ankylosing spondylitis, 9,564 European ancestry controls	NR	2q12.1	IL18R1, IL1R1	rs10197284-G	0.26	2E-6		1.25	[1.14-1.38]	Illumina [at least 106525] (imputed)	N
1370	chr2	102984278	102984279	rs1420098	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q12.1	NR	rs1420098-?	NR	2E-20	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1370	chr2	102985423	102985424	rs2058622	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	2q12.1	NR	rs2058622-?	NR	7E-26	(IL-18 Ra)			Illumina [~ 4000000] (imputed)	N
1370	chr2	102985423	102985424	rs2058622	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL18R1, IL1RL1, IL18RAP, AC007278.2, AC007278.3, SLC9A4, AC007248.7, MIR4772	rs2058622-A	0.22668	9E-108	(Interleukin-18 receptor 1)	0.9953	[0.92-1.07] unit increase	Affymetrix [509946]	N
1370	chr2	102986187	102986188	rs3771167	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL18R1, IL1RL1, AC007278.3, IL18RAP, AC007248.7, MIR4772, AC007278.2	rs3771167-G	0.1024096	1E-11	(EA, Interleukin-1 receptor-like 1)	0.4358	[0.31-0.56] unit increase	Affymetrix [509946]	N
1370	chr2	102986221	102986222	rs3771166	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	2q12.1	IL18R1	rs3771166-G	0.62	3E-9		1.15	[1.10-1.20]	Illumina [582892]	N
1370	chr2	102987458	102987459	rs6543124	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	2q12.1	IL18R1	rs6543124-T	0.615	7E-10		1.1494253	[1.10-1.20]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1370	chr2	102988299	102988300	rs11465606	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	2q12.1	IL18R1	rs11465606-A	0.024	7E-9		6.149	[3.324-11.37]	Illumina [7585874] (imputed)	N
1370	chr2	102988299	102988300	rs11465606	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	2q12.1	IL18R1	rs11465606-A	0.022	7E-6		6.86	[2.958-15.91]	Illumina [7585874] (imputed)	N
1370	chr2	103002394	103002395	rs3755274	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	2q12.1		rs3755274-G	0.7669	2E-24		0.87		Affymetrix, Illumina [9397031] (imputed)	N
1370	chr2	103003264	103003265	rs2241116	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q12.1	IL1R1, IL1RL1, IL1RL2, IL18R1, IL18RAP, MIR4772, SLC9A2, SLC9A4	rs2241116-A	0.220145	1E-22		1.0745434	[1.06-1.09]	Affymetrix [8274727] (imputed)	N
1370	chr2	103007219	103007220	rs2001461	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	IL18R1	rs2001461-C	0.778	3E-129	(Interleukin-18 receptor 1, IL18R1.14079.14.3)	0.68	[0.62-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
1370	chr2	103007622	103007623	rs3860444	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	2q12.1	IL18R1	rs3860444-A	0.3466	4E-9		1.123	[1.082-1.165]	Affymetrix [15688218] (imputed)	N
1370	chr2	103009411	103009412	rs11679146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	2q12.1		rs11679146-G	NR	6E-34		0.1599	[0.13-0.19] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1370	chr2	103009411	103009412	rs11679146	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	2q12.1	IL18R1	rs11679146-G	0.135806	6E-34		0.15992402	[0.13-0.19] unit decrease	Affymetrix [7288503] (imputed)	N
1370	chr2	103012901	103012902	rs1420095	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		2q12.1	IL18R1	rs1420095-?	0.91	6E-6		1.5873016		Illumina [90536]	N
1370	chr2	103016043	103016044	rs11123926	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q12.1	IL18R1	rs11123926-A	0.720476	1E-9		0.01628276	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1370	chr2	103016165	103016166	rs28634469	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q12.1	NR	rs28634469-?	NR	1E-17				Affymetrix [NR]	N
1371	chr2	103027102	103027103	rs6419573	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	2q12.1	IL18R1, IL18RAP	rs6419573-T	0.26	2E-13	(EA, fixed effects)	1.11	[1.08-1.14]	Illumina [15539996] (imputed)	N
1371	chr2	103034439	103034440	rs11465670	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Liver fibrosis in pediatric non-alcoholic fatty acid liver disease	208 Hispanic boys	NA	2q12.1	IL18RAP	rs11465670-C	0.04327	8E-6	(additive model)			Illumina [up to 624297]	N
1371	chr2	103035043	103035044	rs1420106	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q12.1	IL18R1	rs1420106-G	0.776	1E-273	(Interleukin-18 receptor 1, IL18R1.3446.7.2)	0.91	[0.85-0.97] unit decrease	Affymetrix [10572788] (imputed)	N
1371	chr2	103042400	103042401	rs12997015	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL18RAP	rs12997015-G	0.03009027	8E-18	(EA, Interleukin-1 receptor-like 1)	1.001	[0.78-1.22] unit decrease	Affymetrix [509946]	N
1371	chr2	103042711	103042712	rs3755266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2q12.1	IL18RAP	rs3755266-A	0.48234	7E-11		0.014517507	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr2	103042890	103042891	rs368124191	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	2q12.1		rs368124191-?	NR	4E-16		1.26	[1.19-1.33]	Illumina [9900441] (imputed)	N
1371	chr2	103042898	103042898	rs397776771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2q12.1		rs397776771-AT	NR	2E-20		0.157	[0.12-0.19] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1371	chr2	103042898	103042898	rs397776771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2q12.1		rs397776771-AT	0.569828697	3E-15		0.1957903	[0.15-0.24] unit decrease	Illumina [13428180] (imputed)	N
1371	chr2	103042898	103042898	rs397776771	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	2q12.1		rs397776771-AT	0.553206069	1E-16		0.7628647	[0.715638576-0.813207335]	Illumina [8919992] (imputed)	N
1371	chr2	103045019	103045020	rs11694658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.1	NR	rs11694658-G	0.743314	3E-31				Affymetrix, Illumina [23472807] (imputed)	N
1371	chr2	103048102	103048103	rs6755786	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q12.1		rs6755786-C	0.226	1E-9				Affymetrix [10369434] (imputed)	N
1371	chr2	103048102	103048103	rs6755786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q12.1	IL18RAP	rs6755786-T	0.774334	8E-25		0.027095655	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr2	103048102	103048103	rs6755786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q12.1	NR	rs6755786-T	0.773393	4E-32		0.026573	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1371	chr2	103050457	103050458	rs6543134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q12.1		rs6543134-G	NR	2E-17		0.0242	[0.019-0.03] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1371	chr2	103050457	103050458	rs6543134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q12.1	AC007278.2	rs6543134-G	0.77444	4E-24		0.026735213	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr2	103051143	103051144	rs11681718	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	2q12.1	IL18RAP	rs11681718-?	NR	1E-7		1.1363636	[1.09-1.20]	Illumina [at least 5000000] (imputed)	N
1371	chr2	103051474	103051475	rs34020101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q12.1	AC007278.2	rs34020101-T	0.5998	8E-32		0.04280614	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103051474	103051475	rs34020101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q12.1	AC007278.2	rs34020101-T	0.5999	1E-26		0.03903311	[0.032-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103051474	103051475	rs34020101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q12.1	AC007278.2	rs34020101-T	0.5999	1E-27		0.03962069	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103051474	103051475	rs34020101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q12.1	AC007278.2	rs34020101-T	0.6	6E-27		0.03927692	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103051474	103051475	rs34020101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q12.1	AC007278.2	rs34020101-T	0.5999	5E-32		0.04290931	[0.036-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103054448	103054449	rs2058660	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q12.1	IL18RAP	rs2058660-A	0.7745	4E-9		0.02509048	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103054448	103054449	rs2058660	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2q12.1	IL12RL2, IL18R1, IL1RL1, IL18RAP	rs2058660-G	0.231	2E-12		1.19	[1.14-1.26]	Affymetrix, Illumina [953241] (imputed)	N
1371	chr2	103054766	103054767	rs11465699	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	IL18RAP	rs11465699-A	0.06	2E-8		0.14	[0.1-0.18] unit increase	Affymetrix [2500000] (imputed)	N
1371	chr2	103057042	103057043	rs17027173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q12.1		rs17027173-A	NR	1E-8		0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1371	chr2	103057891	103057892	rs11465702	33328473	Ahluwalia TS	2020-12-16	Nat Commun	FUT2-ABO epistasis increases the risk of early childhood asthma and Streptococcus pneumoniae respiratory illnesses.	Childhood asthma with severe exacerbations	2,866 European ancestry cases,  65,415 European ancestry controls	NA	2q12.1	NR	rs11465702-A	NR	3E-11		0.3145	[0.22-0.41] unit increase	Illumina [up to 525976] (imputed)	N
1371	chr2	103060312	103060313	rs4851584	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q12.1		rs4851584-A	0.226	3E-10				Affymetrix [10369434] (imputed)	N
1371	chr2	103062115	103062116	rs7597017	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q12.1	IL18RAP	rs7597017-?	NR	4E-6		1.0752687	[1.03-1.12]	Illumina [at least 5000000] (imputed)	N
1371	chr2	103063368	103063369	rs6708413	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q12.1	NR	rs6708413-G	0.2376	9E-14	(EA)	1.0917488	[1.07-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1371	chr2	103063368	103063369	rs6708413	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q12.1	NR	rs6708413-G	0.2376	3E-16	(EA)	1.1225724	[1.09-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1371	chr2	103064511	103064512	rs11465729	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2q12.1	NR	rs11465729-?	NR	9E-36	(ST2)	0.622518	[0.52-0.72] unit decrease	Illumina [11901634] (imputed)	N
1371	chr2	103067822	103067823	rs11465732	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q12.1		rs11465732-C	0.925	4E-15				Affymetrix [10369434] (imputed)	N
1371	chr2	103070567	103070568	rs917997	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q12.1	IL18R1, IL1RL1, IL1R1, IL1RL2, IL18RAP, IL1R2	rs917997-T	0.231	3E-20		1.103	[1.067-1.14]	Affymetrix, Illumina [1230000] (imputed)	N
1371	chr2	103070567	103070568	rs917997	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q12.1	IL18R1, IL1RL1, IL1RL2, IL18RAP	rs917997-A	0.24	1E-15		1.19	[1.14-1.25]	Illumina [292387]	N
1371	chr2	103074273	103074274	rs6543140	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	IL18R1, IL18RAP, AC007278.3, SLC9A4, AC007248.7, AC007278.2, MIR4772	rs6543140-T	0.3013078	1E-24	(EA, Interleukin-18 receptor accessory protein)	0.4854	[0.4-0.58] unit increase	Affymetrix [509946]	N
1371	chr2	103077144	103077145	rs4851589	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.1	IL18RAP	rs4851589-A	0.67046875	2E-7	(IL18RAP, 2993_1_2)	0.13668948	[0.085-0.188] unit decrease	Illumina [> 1000000] (imputed)	N
1371	chr2	103080591	103080592	rs2075184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q12.1		rs2075184-C	NR	1E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1371	chr2	103080591	103080592	rs2075184	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	2q12.1	IL18R1	rs2075184-T	0.23	9E-8				Illumina [7347414] (imputed)	N
1371	chr2	103086769	103086770	rs990171	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q12.1	SLC9A4	rs990171-C	0.7739	6E-16		0.03469513	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1371	chr2	103086769	103086770	rs990171	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2q12.1	IL18R, IL18RAP	rs990171-A	0.225	1E-16		1.2		Illumina [139553]	N
1371	chr2	103087085	103087086	rs72825929	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs72825929-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1371	chr2	103087640	103087641	rs4851592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q12.1	SLC9A4	rs4851592-T	0.302598	5E-12		0.016709393	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1371	chr2	103091539	103091540	rs17027258	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q12.1	SLC9A4	rs17027258-G	0.37	7E-6	(eosinophil count)	0.055	[0.04-0.08] unit decrease	Illumina [2178645] (imputed)	N
1371	chr2	103092440	103092441	rs1468790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs1468790-?	NR	8E-19				Affymetrix [~ 8270000] (imputed)	N
1371	chr2	103092440	103092441	rs1468790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs1468790-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1371	chr2	103092512	103092513	rs1468788	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2q12.1	SLC9A4	rs1468788-?	NR	3E-8		0.101	unit decrease	Illumina [up to 143074]	N
1371	chr2	103093242	103093243	rs10469840	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q12.1	SLC9A4	rs10469840-T		2E-16		1.1902305		Illumina [252970]	N
1371	chr2	103094212	103094213	rs759382	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	2q12.1	SLC9A4	rs759382-C	0.2454	6E-11		1.22	[1.15-1.29]	Illumina [128830]	N
1371	chr2	103096694	103096695	rs6543146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q12.1		rs6543146-G	NR	6E-12		0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1371	chr2	103098675	103098676	rs2140316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.1		rs2140316-?	NR	6E-19				NR [~ 8900000] (imputed)	N
1371	chr2	103098680	103098681	rs116581033	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q12.1		rs116581033-C	0.987	7E-9				Affymetrix [10369434] (imputed)	N
1371	chr2	103103739	103103740	rs78136548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.1	NR	rs78136548-G	0.12905	5E-14				Affymetrix, Illumina [21126107] (imputed)	N
1371	chr2	103105610	103105611	rs1030025	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL18R1	5,354 Icelandic ancestry individuals	NA	2q12.1		rs1030025-T	0.2075	2E-69		0.384124	[0.34-0.43] unit decrease	Illumina [7506463] (imputed)	N
1371	chr2	103107279	103107280	rs2871473	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	SLC9A4	rs2871473-C	0.1765594	1E-16	(EA, Interleukin-18 receptor 1)	0.464	[0.36-0.57] unit decrease	Affymetrix [509946]	N
1371	chr2	103120399	103120400	rs4851016	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	SLC9A4	rs4851016-C	0.2828485	2E-11	(Interleukin-1 receptor-like 1)	0.2914	[0.21-0.38] unit increase	Affymetrix [509946]	N
1371	chr2	103123911	103123912	rs76229479	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	10,476 European, African American, Hispanic/Latino or East Asian ancestry male individuals	NA	2q12.1		rs76229479-C	NR	1E-9		0.8352	[0.56-1.11] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
1371	chr2	103126538	103126539	rs11688802	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs11688802-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1371	chr2	103130360	103130361	rs145475960	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	2q12.1	SLC9A4	rs145475960-A	0.02	1E-6		5.499	[2.778-10.89]	Illumina [7585874] (imputed)	N
1371	chr2	103149099	103149100	rs1014286	23999434	Ho JE	2013-09-03	J Clin Invest	Common genetic variation at the IL1RL1 locus regulates IL-33/ST2 signaling.	Serum protein levels (sST2)	2,797 individuals	NA	2q12.1	SLC9A4	rs1014286-G	0.36	3E-33		0.11	[0.09-0.13] unit increase	Affymetrix [2500000] (imputed)	N
1371	chr2	103150305	103150306	rs10179874	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q12.1	NR	rs10179874-C	0.559307	8E-11		0.012611	[0.0088-0.0164] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1372	chr2	103155074	103155075	rs77375846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q12.1		rs77375846-C	NR	2E-15		0.0226	[0.017-0.028] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1372	chr2	103155074	103155075	rs77375846	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin desaturation per event)	7,832 European ancestry individuals	NA	2q12.1		rs77375846-C	NR	1E-8		0.2014	[0.13-0.27] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1372	chr2	103155074	103155075	rs77375846	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin desaturation per event)	10,060 European, African American, Hispanic/Latino or East Asian ancestry individuals	NA	2q12.1		rs77375846-C	NR	2E-9		0.208	[0.14-0.28] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1372	chr2	103155074	103155075	rs77375846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q12.1	SLC9A4	rs77375846-C	0.132601	5E-13		0.0235638	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr2	103155074	103155075	rs77375846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q12.1	NR	rs77375846-C	0.131915	3E-16		0.024209	[0.018-0.03] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1372	chr2	103156512	103156512	rs139178139	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin desaturation per event)	5,943 European, African American, Hispanic/Latino or East Asian ancestry male individuals	NA	2q12.1		rs139178139-CATA	NR	4E-9		0.2563	[0.17-0.34] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1372	chr2	103156512	103156512	rs139178139	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin desaturation per event)	4,985 European male ancestry individuals	NA	2q12.1		rs139178139-CATA	NR	6E-9		0.2647	[0.18-0.35] unit decrease	Affymetrix, Illumina [22105437] (imputed)	N
1372	chr2	103161515	103161516	rs115039395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs115039395-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1372	chr2	103166324	103166325	rs72995641	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q12.1	SLC9A4	rs72995641-A	0.2043	1E-7		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1372	chr2	103166324	103166325	rs72995641	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q12.1	SLC9A4	rs72995641-A	0.2014	2E-8		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1372	chr2	103167030	103167031	rs13008334	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs13008334-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103169814	103169815	rs138895820	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q12.1		rs138895820-G	NR	8E-12		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1372	chr2	103169814	103169815	rs138895820	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (minimum oxyhemoglobin saturation across sleep episode)	21,128 European, African American, Hispanic/Latino or East Asian ancestry individuals	NA	2q12.1		rs138895820-G	NR	8E-9		0.607	[0.4-0.81] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
1372	chr2	103170162	103170163	rs56147623	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2q12.1		rs56147623-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1372	chr2	103175375	103175376	rs10171438	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	2q12.1	NR	rs10171438-?	NR	5E-21	(ST2)	0.460466	[0.36-0.56] unit decrease	Illumina [11901634] (imputed)	N
1372	chr2	103178947	103178948	rs72825990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs72825990-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103178947	103178948	rs72825990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs72825990-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103178947	103178948	rs72825990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs72825990-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103179941	103179942	rs12623748	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	2q12.1	NR	rs12623748-?	0.03799	3E-6		0.129165	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
1372	chr2	103182272	103182273	rs12469973	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	interleukin-18 receptor 1 levels	982 Scottish ancestry individuals	NA	2q12.1	NR	rs12469973-A	0.21306	9E-16		0.45502	[0.34-0.57] unit increase	Illumina [7903493] (imputed)	N
1372	chr2	103194557	103194558	rs74263644	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs74263644-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103194557	103194558	rs74263644	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs74263644-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103197838	103197839	rs11695255	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q12.1	NR	rs11695255-?		7E-6				Illumina [4322238] (imputed)	N
1372	chr2	103201304	103201305	rs12712161	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q12.1	NR	rs12712161-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103208609	103208610	rs1861229	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	2q12.1		rs1861229-A	0.52	3E-8		0.026	[0.016-0.036] L increase	Affymetrix [NR] (imputed)	N
1372	chr2	103209595	103209596	rs10209131	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs10209131-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103210543	103210544	rs2310313	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs2310313-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103215409	103215410	rs79387448	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2q12.1	SLC9A2	rs79387448-C	NR	8E-11	(Blautia genus)	0.31	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1372	chr2	103216171	103216172	rs6725806	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	2q12.1		rs6725806-T	0.25	1E-60		0.1507	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1372	chr2	103216171	103216172	rs6725806	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q12.1	Intergenic	rs6725806-T	0.2628141	2E-13	(EA, Interleukin-18 receptor 1)	0.345	[0.25-0.44] unit increase	Affymetrix [509946]	N
1372	chr2	103239355	103239356	rs75218113	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q12.1	NR	rs75218113-G	NR	1E-11		0.0231	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1372	chr2	103251926	103251927	rs17775170	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs17775170-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103251926	103251927	rs17775170	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q12.1	NR	rs17775170-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103253028	103253029	rs67768228	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q12.1	NR	rs67768228-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1372	chr2	103253127	103253128	rs7567133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q12.1	SLC9A2	rs7567133-A	0.162819	7E-10		0.018866785	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1372	chr2	103262414	103262415	rs7594983	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2q12.1	SLC9A2, MFSD9, TMEM182, SLC9A4	rs7594983-C	NR	9E-6	(wake after sleep onset, weekdays)	0.06737	[0.038-0.097] unit decrease	Affymetrix [7141204] (imputed)	N
1373	chr2	103290450	103290451	rs6741115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs6741115-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1373	chr2	103335440	103335441	rs33993717	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2q12.1	MFSD9	rs33993717-?	NR	5E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1373	chr2	103338671	103338672	rs113247979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q12.1	NR	rs113247979-T	0.992995	2E-9		0.0471068	[0.032-0.062] unit increase	Affymetrix [16578495] (imputed)	N
1373	chr2	103338671	103338672	rs113247979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q12.1	NR	rs113247979-T	0.99292	7E-17		0.139703	[0.11-0.17] unit increase	Affymetrix [16580851] (imputed)	N
1373	chr2	103338671	103338672	rs113247979	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q12.1	NR	rs113247979-T	0.99291	5E-9		0.0822416	[0.052-0.112] unit increase	Affymetrix [16585745] (imputed)	N
1373	chr2	103388593	103388594	rs12465996	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q12.1	NR	rs12465996-C	0.864479920980926	5E-6	(IGP1)	0.2431	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1373	chr2	103388593	103388594	rs12465996	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q12.1	NR	rs12465996-C	0.864380324681238	5E-6	(IGP41)	0.2423	[0.14-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
1373	chr2	103394708	103394709	rs62153409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.1		rs62153409-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1373	chr2	103398333	103398334	rs2732860	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	2q12.1	TMEM182	rs2732860-G	0.52	3E-15		0.9	[0.68-1.12] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	7E-10	(-104 ms)	0.0335949	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	5E-11	(-114 ms)	0.0357313	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	5E-11	(-108 ms)	0.0362979	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	5E-10	(-118 ms)	0.0337043	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	4E-11	(-110 ms)	0.0358827	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	3E-11	(-112 ms)	0.0359682	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	2E-10	(-116 ms)	0.0343441	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103399134	103399135	rs2732861	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q12.1	TMEM182	rs2732861-A	0.50868	1E-10	(-106 ms)	0.0356727	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1373	chr2	103415493	103415494	rs2732814	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q12.1	TMEM182	rs2732814-A	0.4911	4E-34		0.771	[0.65-0.9] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1374	chr2	103426176	103426177	rs2540277	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q12.1	NR	rs2540277-C	NR	7E-6		1.098901	[NR]	Illumina [7158791] (imputed)	N
1374	chr2	103433291	103433292	rs6752950	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q12.1	NR	rs6752950-?	NR	3E-9				Affymetrix [NR]	N
1374	chr2	103475597	103475598	rs870155	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q12.1	NA	rs870155-T		1E-9		0.0157768	[0.011-0.021] unit decrease	Illumina [13288253] (imputed)	N
1374	chr2	103512291	103512292	rs13402330	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	2q12.1	SCL9A2, MFSD9	rs13402330-A	0.19	6E-6	(AA-glucose response)	5.27	[3-7.54] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
1374	chr2	103524930	103524931	rs887992	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,930 European ancestry cases, 13,634 European ancestry controls	NA	2q12.1	TMEM182	rs887992-C	0.363	4E-10		0.75	[0.70-0.82]	Illumina [11310926] (imputed)	N
1374	chr2	103524930	103524931	rs887992	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	2q12.1	TMEM182	rs887992-C	0.362	4E-10		0.75	[0.70-0.82]	Illumina [11310926] (imputed)	N
1375	chr2	103574136	103574137	rs10202535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q12.1	Intergenic	rs10202535-T	0.5133	6E-10		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1375	chr2	103576087	103576088	rs12105421	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	2q12.1	intergenic	rs12105421-?		5E-7				Affymetrix [545513]	N
1375	chr2	103578549	103578550	rs4380261	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q12.1	Intergenic	rs4380261-T	0.4853	2E-8	(MTAG)	0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1376	chr2	103764413	103764414	rs144605126	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2q12.1	Intergenic	rs144605126-G	0.96	4E-6	(AA)			Illumina [NR] (imputed)	N
1376	chr2	103770237	103770238	rs6735786	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	2q12.1	NR	rs6735786-C	0.64	2E-6		0.07	[0.04-0.09] s.d. decrease	Illumina [305051]	N
1376	chr2	103775434	103775435	rs10204051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.1		rs10204051-T	0.4055	2E-12		0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1376	chr2	103775434	103775435	rs10204051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q12.1	Intergenic	rs10204051-T	0.4055	2E-12	(MTAG)	0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1376	chr2	103777716	103777717	rs1534454	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q12.1	NR	rs1534454-T	0.272	3E-9		0.00918866	[0.0061-0.0122] unit increase	NR [~ 9732723] (imputed)	N
1377	chr2	103857073	103857074	rs1430065	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q12.1	TMEM182	rs1430065-T	0.2703	2E-10		0.01433919	[0.0099-0.0188] unit increase	Affymetrix [11514654] (imputed)	N
1377	chr2	103892497	103892497	rs773118143	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	2q12.1	NR	rs773118143-ACTCTGTAT	NR	3E-8		0.00649462	[0.0042-0.0088] unit decrease	NR [11010159] (imputed)	N
1377	chr2	103892497	103892497	rs773118143	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	2q12.1	NR	rs773118143-ACTCTGTAT	NR	4E-7	(adjusted for BMI)	0.00594	[0.0036-0.0082] unit decrease	NR [11010159] (imputed)	N
1377	chr2	103900582	103900583	rs17028556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.1	Intergenic	rs17028556-T	0.2612	2E-9	(MTAG)	0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr2	103998796	103998797	rs7601511	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	2q12.1	RPTN	rs7601511-G	0.2144	3E-11		0.1427	[-0.52488-0.81028]	Illumina [281811]	N
1378	chr2	104018062	104018063	rs7582966	32080893	Divers J	2020-02-20	Clin Transplant	GWAS for time to failure of kidney transplants from African American deceased donors.	Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction	532 African American donors	250 African American donors	2q12.1	intergenic	rs7582966-?	NR	5E-7		1.17	NR unit decrease	Illumina [> 13000000] (imputed)	N
1378	chr2	104036432	104036433	rs13390641	24903457	Kim YK	2014-06-05	BMC Med Genet	Identification of a genetic variant at 2q12.1 associated with blood pressure in East Asians by genome-wide scan including gene-environment interactions.	Blood pressure (anthropometric measures interaction)	7,486 Korean ancestry individuals	4,544 East Asian ancestry individuals	2q12.1	TMEM182	rs13390641-A	0.11	5E-8	(SBP)	0.59	[0.37-0.81] unit increase	Affymetrix [1573409] (imputed)	N
1378	chr2	104036432	104036433	rs13390641	24903457	Kim YK	2014-06-05	BMC Med Genet	Identification of a genetic variant at 2q12.1 associated with blood pressure in East Asians by genome-wide scan including gene-environment interactions.	Blood pressure	7,486 Korean ancestry individuals	4,544 East Asian ancestry individuals	2q12.1	TMEM182	rs13390641-A	0.11	4E-8	(SBP)	14.4	[9.26-19.54] unit decrease	Affymetrix [1573409] (imputed)	N
1378	chr2	104039496	104039497	rs142079466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q12.1	NR	rs142079466-A	0.01394	1E-11	(SERPINA1)	3.098	NR unit increase	Illumina [1671387] (imputed)	N
1378	chr2	104057363	104057364	rs1368546	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q12.1	NA	rs1368546-T		1E-9		0.0112124	[0.0076-0.0148] unit increase	Illumina [13288253] (imputed)	N
1378	chr2	104057363	104057364	rs1368546	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q12.1	TMEM182	rs1368546-T	0.4431	8E-10		0.01593145	[0.011-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
1378	chr2	104059282	104059283	rs1433309	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q12.1	TMEM182	rs1433309-A	0.555	3E-11		0.0079	[0.0055-0.0103] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1378	chr2	104059282	104059283	rs1433309	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q12.1	ENSG00000236596	rs1433309-?	NR	6E-9		0.010155	[0.0067-0.0136] unit increase	Affymetrix [805426] (imputed)	N
1378	chr2	104060002	104060003	rs34748029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.1		rs34748029-A	0.0876	4E-13		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1378	chr2	104060002	104060003	rs34748029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q12.1	Intergenic	rs34748029-A	0.0876	2E-14	(MTAG)	0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1378	chr2	104060787	104060788	rs1368547	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q12.1	intergenic	rs1368547-T	0.443264	3E-15		0.0164561	[0.012-0.021] unit decrease	NR [16516521] (imputed)	N
1378	chr2	104064725	104064726	rs1368549	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	2q12.1	NR	rs1368549-T	0.487812	1E-13		7.43	z score increase	NR [10847151] (imputed)	N
1378	chr2	104066170	104066171	rs144874087	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1-day periodicity)	90,515 individuals	NA	2q12.1	LINC01935	rs144874087-T	NR	2E-8		0.362	[0.24-0.49] unit increase	NR [11024754] (imputed)	N
1378	chr2	104069182	104069183	rs1040124	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	2q12.1	TMEM182	rs1040124-A	0.56974	3E-8		0.0218027	[0.014-0.029] unit increase	Affymetrix [641018] (imputed)	N
1378	chr2	104069783	104069784	rs266067	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q12.1	ENSG00000236596	rs266067-?	NR	3E-9		0.010444	[0.007-0.0139] unit increase	Affymetrix [805426] (imputed)	N
1379	chr2	104072109	104072110	rs2672852	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	2q12.1	ENSG00000236596	rs2672852-C	NR	3E-13		0.011189	[0.0082-0.0142] unit increase	Affymetrix [18485882] (imputed)	N
1379	chr2	104072109	104072110	rs2672852	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q12.1	NR	rs2672852-C	NR	9E-9		0.0137	[0.009-0.0184] unit decrease	Affymetrix [10847151] (imputed)	N
1379	chr2	104076419	104076420	rs266069	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q12.1	NR	rs266069-C	0.485	4E-41		0.0144685	[0.012-0.017] unit decrease	NR [9732723] (imputed)	N
1379	chr2	104078654	104078655	rs1368550	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q12.1	TMEM182	rs1368550-T	0.5189	1E-21		0.019237012	[0.015-0.023] unit increase	Affymetrix [11514654] (imputed)	N
1379	chr2	104084860	104084861	rs266060	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2q12.1	TMEM182	rs266060-A	0.5349	4E-8		0.013008388	[0.0084-0.0177] unit decrease	Affymetrix [11515109] (imputed)	N
1379	chr2	104086427	104086428	rs266058	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q12.1		rs266058-C	0.528	2E-38		0.016	[0.014-0.018] unit increase	NR [NR] (imputed)	N
1379	chr2	104089942	104089943	rs1093422	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	2q12.1	NR	rs1093422-?	NR	9E-6		0.0419	[0.023-0.06] unit decrease	Illumina [at least 560000] (imputed)	N
1379	chr2	104090212	104090213	rs266053	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	2q12.1	TMEM182, LOC100287010	rs266053-?	NR	3E-8		1.06	[1.039-1.083]	Illumina [13729857] (imputed)	N
1379	chr2	104094007	104094008	rs817223	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2q12.1	intergenic	rs817223-?	NR	8E-9		0.0140315	[0.0093-0.0188] unit increase	Affymetrix [25921788] (imputed)	N
1379	chr2	104099832	104099833	rs6756149	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2q12.1	intergenic	rs6756149-?	NR	7E-11		0.015856	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1379	chr2	104103139	104103140	rs35559831	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q12.1	ENSG00000236596	rs35559831-?	NR	1E-10		0.022093302	[0.015-0.029] unit increase	NR [7306098]	N
1379	chr2	104126982	104126983	rs1901477	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2q12.1	TMEM182, LOC100287010	rs1901477-A		1E-15		0.972	[NR]	Affymetrix [up to 79000000] (imputed)	N
1379	chr2	104126982	104126983	rs1901477	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q12.1	NR	rs1901477-G	0.511	2E-31		0.030436993	[0.025-0.036] unit increase	NR [~ 10000000] (imputed)	N
1379	chr2	104134431	104134432	rs9679319	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2q12.1	NR	rs9679319-T	0.4797	2E-9		6.01	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1379	chr2	104139422	104139422	rs147420422	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	2q12.1	intergenic	rs147420422-?	NR	2E-9		0.0146591	[0.0099-0.0194] unit decrease	Affymetrix [25921788] (imputed)	N
1379	chr2	104149469	104149470	rs1597745	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q12.1		rs1597745-G	0.44	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
1379	chr2	104150790	104150791	rs6720941	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q12.1	TMEM182	rs6720941-T	0.461	6E-16		0.0185	[0.014-0.023] unit increase	Illumina [~ 250000] (imputed)	N
1379	chr2	104150890	104150891	rs6738833	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q12.1	TMEM182	rs6738833-T	0.33	9E-14		0.018	[0.012-0.024] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1379	chr2	104155413	104155414	rs71415374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.1	Intergenic	rs71415374-T	0.0807	3E-9	(MTAG)	0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1379	chr2	104158984	104158984	rs149047463	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2q12.1	intergenic	rs149047463-A	0.5223	2E-10		0.0603	[0.042-0.079] unit increase	NR [9744772] (imputed)	N
1379	chr2	104164949	104164950	rs4851031	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	2q12.1	NR	rs4851031-A	0.478049	2E-9		6.0	z score increase	NR [10847151] (imputed)	N
1379	chr2	104179698	104179699	rs10174328	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	2q12.1	ENSG00000221849	rs10174328-C	NR	1E-8		0.0086489	[0.0057-0.0116] unit decrease	Affymetrix [18485882] (imputed)	N
1380	chr2	104204519	104204520	rs1869073	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q12.1	NR	rs1869073-C	0.519	5E-22		0.0142545	[0.011-0.017] unit decrease	NR [9732723] (imputed)	N
1380	chr2	104214868	104214869	rs181820530	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1-day periodicity)	90,515 individuals	NA	2q12.1	LINC01935	rs181820530-A	NR	4E-8		0.345	[0.22-0.47] unit increase	NR [11024754] (imputed)	N
1380	chr2	104267571	104267572	rs67716713	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	2q12.1	NR	rs67716713-C	0.5134	5E-11		1.0334849	NR	NR [8968716] (imputed)	N
1380	chr2	104268284	104268285	rs264974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q12.1		rs264974-?	NR	9E-17				NR [~ 8900000] (imputed)	N
1380	chr2	104269261	104269262	rs264979	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q12.1		rs264979-?	NR	6E-13				NR [7857346] (imputed)	N
1380	chr2	104269261	104269262	rs264979	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q12.1	ENSG00000231723	rs264979-?	NR	6E-13		0.012573	[0.0092-0.016] unit increase	Affymetrix [805426] (imputed)	N
1380	chr2	104275975	104275976	rs264923	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	2q12.1	NR	rs264923-T	0.482286	6E-9		5.82	z score increase	NR [10847151] (imputed)	N
1380	chr2	104298540	104298541	rs264943	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	2q12.1	intergenic	rs264943-?	NR	7E-6				Illumina [990115]	N
1380	chr2	104303310	104303311	rs264952	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q12.1	NR	rs264952-C	0.457	5E-14		0.0115881	[0.0086-0.0146] unit decrease	NR [9732723] (imputed)	N
1380	chr2	104308544	104308545	rs264962	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q12.1	NA	rs264962-C	0.5428	2E-12		0.0119	[0.0086-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1380	chr2	104308544	104308545	rs264962	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q12.1	NA	rs264962-C	0.5428	2E-12		0.0119	[0.0086-0.0152] unit increase	NR [~ 27400000] (imputed)	N
1380	chr2	104317936	104317936	rs200013961	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	2q12.1	NR	rs200013961-?	NR	3E-7		0.0565	[0.035-0.078] unit decrease	Illumina [at least 560000] (imputed)	N
1381	chr2	104333461	104333462	rs1598778	33693791	Park S	2021-03-09	J Nutr	Observational or Genetically Predicted Higher Vegetable Intake and Kidney Function Impairment: An Integrated Population-Scale Cross-Sectional Analysis and Mendelian Randomization Study.	Vegetable consumption	337,128 European ancestry individuals	NA	2q12.1	NR	rs1598778-T	0.467	6E-9		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
1381	chr2	104336752	104336753	rs10865054	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.1	NR	rs10865054-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1381	chr2	104354231	104354232	rs12712181	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q12.1	ENSG00000231723	rs12712181-?	NR	5E-9		0.010198	[0.0068-0.0136] unit increase	Affymetrix [805426] (imputed)	N
1381	chr2	104361419	104361420	rs9308868	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q12.1	NR	rs9308868-G	0.463221	2E-8		0.039430823	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1381	chr2	104412923	104412924	rs72820274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q12.1		rs72820274-A	NR	8E-9		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1381	chr2	104412923	104412924	rs72820274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q12.1		rs72820274-A	NR	6E-12		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1381	chr2	104412923	104412924	rs72820274	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q12.1	NR	rs72820274-A	0.417	1E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1381	chr2	104420857	104420858	rs6707445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q12.1		rs6707445-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1381	chr2	104432493	104432494	rs11889814	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q12.1	NR	rs11889814-C	0.128	3E-8	(Conditioned on chr2:104126983)	0.021026509	[0.014-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1381	chr2	104437849	104437857	rs139630683	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Ambidextrousness	47,637 European ancestry cases, 1,422,823 European ancestry controls	NA	2q12.1	AC013727.1	rs139630683-D	0.4517	5E-9		1.0504707	[NR]	Illumina [12493443] (imputed)	N
1381	chr2	104441545	104441546	rs2570497	32920024	Sanna M	2020-09-10	J Invest Dermatol	Looking for Sunshine: Genetic Predisposition to Sun-Seeking in 265,000 Individuals of European Ancestry.	Sun-seeking behavior	261,915 European ancestry individuals	NA	2q12.1	TMEM182	rs2570497-T		2E-8				Affymetrix, Illumina [8385325] (imputed)	N
1381	chr2	104441545	104441546	rs2570497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q12.1		rs2570497-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1381	chr2	104441545	104441546	rs2570497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.1		rs2570497-T	0.6367	1E-16		0.0121	[0.0092-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr2	104441545	104441546	rs2570497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q12.1	Intergenic	rs2570497-T	0.6367	2E-18	(MTAG)	0.0119	[0.0092-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr2	104442941	104442942	rs2570496	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q12.1		rs2570496-T	0.596729867	7E-6		0.01142102	[0.0064-0.0164] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1381	chr2	104443941	104443942	rs2570495	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q12.1	NA	rs2570495-?		5E-15				Affymetrix, Illumina [NR] (imputed)	N
1381	chr2	104443941	104443942	rs2570495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.1	Intergenic	rs2570495-T	0.5954	8E-15	(MTAG)	0.013	[0.0097-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1381	chr2	104447051	104447052	rs2916251	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q12.1	NR	rs2916251-?		2E-13		0.016593	[0.012-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
1381	chr2	104447053	104447054	rs533493779	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q12.1	TMEM182	rs533493779-A	0.492178	1E-9		0.00869294	[0.0059-0.0115] unit decrease	Affymetrix [12370749]	N
1381	chr2	104451133	104451134	rs1550536	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q12.1	Intergenic	rs1550536-C	0.396	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1381	chr2	104458279	104458280	rs17029268	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q12.1	NR	rs17029268-?	NR	7E-7		3072.6887	NR unit decrease	Illumina [2379855]	N
1382	chr2	104464466	104464467	rs2570485	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q12.1		rs2570485-T	0.241775279	2E-7		0.015102832	[0.0094-0.0208] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1382	chr2	104469411	104469412	rs2945451	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2q12.1	NR	rs2945451-T	0.2388	1E-7		0.0073	[0.0046-0.01] unit decrease	NR [7666894] (imputed)	N
1382	chr2	104469563	104469564	rs2678670	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q12.1		rs2678670-A	0.486	3E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1382	chr2	104479861	104479862	rs1441102	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	2q12.1	TMEM182, LOC100287010	rs1441102-T		5E-8		0.95	[NR]	Affymetrix [~ 79000000] (imputed)	N
1382	chr2	104479861	104479862	rs1441102	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q12.1	NR	rs1441102-T	0.502347495549175	4E-8		0.007038002	[0.0045-0.0096] unit decrease	NR [NR]	N
1382	chr2	104479861	104479862	rs1441102	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q12.1	NR	rs1441102-?	NR	5E-8		0.0095365	[0.0061-0.013] unit increase	Affymetrix [805426] (imputed)	N
1382	chr2	104490394	104490395	rs6705778	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q12.1		rs6705778-C	0.29	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
1382	chr2	104517889	104517890	rs2610701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q12.1	Intergenic	rs2610701-C	0.4938	1E-10		0.0126	[0.0089-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1382	chr2	104573004	104573005	rs2119507	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs2119507-T		4E-6				Illumina [2373249] (imputed)	N
1382	chr2	104578532	104578533	rs1036736	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs1036736-T		4E-6				Illumina [2373249] (imputed)	N
1382	chr2	104578922	104578923	rs2582974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.1	Intergenic	rs2582974-T	0.4012	4E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1382	chr2	104580502	104580503	rs12613775	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs12613775-T		4E-6				Illumina [2373249] (imputed)	N
1382	chr2	104587350	104587351	rs10193430	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs10193430-A		4E-6				Illumina [2373249] (imputed)	N
1382	chr2	104589137	104589138	rs11903187	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs11903187-A		4E-6				Illumina [2373249] (imputed)	N
1383	chr2	104601967	104601968	rs12467202	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q12.1	NR	rs12467202-C	0.12181	3E-6		3.298905	[1.92-4.68] unit decrease	Illumina [9469131] (imputed)	N
1383	chr2	104604582	104604583	rs12621166	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q12.1		rs12621166-C	0.552	2E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1383	chr2	104606687	104606688	rs112908842	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01965	rs112908842-?	NR	2E-8	(female)	1.53106	[NR] unit increase	Affymetrix [NR] (imputed)	N
1383	chr2	104619457	104619458	rs186971130	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q12.1	Intergenic	rs186971130-A	NR	1E-7	(between families)	5.311	unit increase	Affymetrix [up to 15107142] (imputed)	N
1383	chr2	104631813	104631814	rs10175706	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q12.1	LOC100287010	rs10175706-?	NR	1E-27		1.172333	[1.14-1.21]	Illumina [13537761] (imputed)	N
1383	chr2	104632093	104632094	rs10178297	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q12.1	MRPS9	rs10178297-?	NR	7E-6	(betaine)	0.20680378	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1383	chr2	104636419	104636420	rs113737238	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	2q12.1		rs113737238-C	0.965369	2E-6		0.0242705	[0.014-0.034] unit decrease	Illumina [13900000] (imputed)	N
1383	chr2	104642665	104642666	rs7568863	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q12.1	NR	rs7568863-T	0.393	3E-16		0.00905125	[0.0069-0.0112] unit decrease	NR [9732723] (imputed)	N
1383	chr2	104667737	104667738	rs6758152	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	2q12.1	NR	rs6758152-T		3E-6				Illumina [2373249] (imputed)	N
1383	chr2	104712141	104712142	rs12472263	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (jaw slope 2)	6,169 Latin American individuals	NA	2q12.1		rs12472263-?	NR	2E-8				Illumina [8703729] (imputed)	N
1383	chr2	104724492	104724493	rs62149424	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q12.1		rs62149424-A	0.07	2E-16		8.24	z score increase	Affymetrix [9061022] (imputed)	N
1383	chr2	104724492	104724493	rs62149424	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	2q12.1		rs62149424-?	NR	2E-8				NR [9705931] (imputed)	N
1384	chr2	104740229	104740230	rs62149429	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q12.1	NR	rs62149429-T	0.0584	8E-12				NR [9056863] (imputed)	N
1384	chr2	104749103	104749104	rs6736012	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q12.1	POU3F3	rs6736012-A	0.057	5E-8		0.0139	[0.0088-0.019] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1384	chr2	104776780	104776781	rs62149441	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q12.1		rs62149441-C	0.08	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1384	chr2	104808711	104808712	rs11890236	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q12.1	intergenic	rs11890236-G	0.035	9E-6	(Diet fat )	0.02	[NR] %energy increase	Illumina [899892]	N
1385	chr2	104935247	104935248	rs13389563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.1		rs13389563-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1385	chr2	104970246	104970247	rs950394	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q12.1	intergenic	rs950394-G	NR	1E-6	(Chinese)	1.096	[1.06-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1385	chr2	104983266	104983267	rs7570682	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	2q12.1	NR	rs7570682-?	NR	3E-6	(addtive)			Affymetrix [NR]	N
1385	chr2	104984386	104984387	rs62152284	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q12.1	NR	rs62152284-?	NR	1E-9		1.06184	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1385	chr2	104984386	104984387	rs62152284	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q12.1	LOC10028701	rs62152284-T	NR	6E-7		1.057	[1.04-1.08]	Illumina [6627481] (imputed)	N
1385	chr2	104984386	104984387	rs62152284	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q12.1	LOC100287010	rs62152284-T	NR	6E-9		1.065	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1386	chr2	105035899	105035900	rs4851694	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	2q12.1	Intergenic	rs4851694-T	NR	6E-6		4.3		Affymetrix [8800000] (imputed)	N
1386	chr2	105039686	105039687	rs2889323	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	2q12.1	Intergenic	rs2889323-C	NR	6E-6		4.3		Affymetrix [8800000] (imputed)	N
1386	chr2	105051171	105051172	rs7562028	29097388	Magvanjav O	2017-11-02	J Am Heart Assoc	Genetic Variants Associated With Uncontrolled Blood Pressure on Thiazide Diuretic/?-Blocker Combination Therapy in the PEAR (Pharmacogenomic Evaluation of Antihypertensive Responses) and INVEST (International Verapamil-SR Trandolapril Study) Trials.	Systolic blood pressure in combination therapy (beta blocker and thiazide diuretic)	314 European ancestry individuals	221 European ancestry individuals, 193 Hispanic individuals	2q12.1	AC013402.2	rs7562028-G	0.07	8E-6		6.05	unit decrease	Illumina [NR] (imputed)	N
1386	chr2	105091270	105091271	rs6543256	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	2q12.1	LOC150568	rs6543256-G	NR	7E-6		4.1		Affymetrix [8800000] (imputed)	N
1387	chr2	105132331	105132332	rs6739701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q12.1		rs6739701-G	NR	1E-20		0.0121	[0.0096-0.0146] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1387	chr2	105132331	105132332	rs6739701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.1		rs6739701-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1387	chr2	105148417	105148418	rs17624303	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q12.1	NR	rs17624303-C	0.7247	5E-8		0.0285	[0.018-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1387	chr2	105158637	105158638	rs17624523	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	2q12.1	POU3F3	rs17624523-?	NR	8E-6				Affymetrix, Illumina [~ 1300000]	N
1387	chr2	105165673	105165674	rs10469860	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q12.1	NR	rs10469860-G	0.2755	4E-8		0.0238	[0.015-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1388	chr2	105267489	105267490	rs7607659	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q12.1	Intergenic	rs7607659-T		7E-6	(EA)	2.95	[1.09-7.98]	Affymetrix, Illumina [NR] (imputed)	N
1388	chr2	105312974	105312975	rs75863239	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q12.1		rs75863239-T	0.90976	3E-8		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1388	chr2	105378956	105378957	rs12615966	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q12.1	LOC284998	rs12615966-A	0.10	7E-6	(recessive)	3.15	[1.91-5.21]	Illumina [420236]	N
1389	chr2	105404220	105404221	rs441792	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q12.1		rs441792-G	0.49	7E-12				NR [NR] (imputed)	N
1389	chr2	105404220	105404221	rs441792	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q12.1		rs441792-G	0.49	1E-14		0.011	% increase	NR [NR] (imputed)	N
1389	chr2	105404902	105404903	rs7585962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.1	NR	rs7585962-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1389	chr2	105414478	105414479	rs6754968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q12.1		rs6754968-A	NR	5E-13		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1389	chr2	105439010	105439010	rs10701371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q12.1		rs10701371-TTAC	NR	1E-8		0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1389	chr2	105450532	105450533	rs72830479	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	2q12.1		rs72830479-?	NR	6E-6				Illumina [7401356] (imputed)	N
1389	chr2	105452325	105452326	rs6739199	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q12.1	NA	rs6739199-T	0.2718	1E-17		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1389	chr2	105454589	105454590	rs10197031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.1	NR	rs10197031-?	NR	4E-16				Affymetrix [~ 8270000] (imputed)	N
1389	chr2	105454589	105454590	rs10197031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q12.1		rs10197031-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1389	chr2	105454589	105454590	rs10197031	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q12.1	NA	rs10197031-T	0.7262	5E-18		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1389	chr2	105454589	105454590	rs10197031	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q12.1	NA	rs10197031-T	0.7262	5E-18		0.0161	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1389	chr2	105460332	105460333	rs745249	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	2q12.1	LINC01158	rs745249-?		2E-11	(Caudal middle frontal)			Affymetrix, Illumina [NR] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	2q12.1		rs1451533-A	0.26	1E-6				NR [13131314] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q12.1		rs1451533-A	0.26	6E-44		13.9	z score increase	Affymetrix [9061022] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 15)	19,670 European ancestry individuals	NA	2q12.1		rs1451533-?	NR	7E-21				NR [9705931] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q12.1	POU3F3	rs1451533-?		6E-19				NR [7428630] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q12.1	POU3F3	rs1451533-G	0.726343	1E-12		0.010968	[0.0079-0.014] unit decrease	Affymetrix [12370749]	N
1389	chr2	105466004	105466005	rs1451533	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q12.1	NR	rs1451533-?		1E-10		0.0157043	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1389	chr2	105466004	105466005	rs1451533	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q12.1	POU3F3, LOC100287010, LOC150568, LOC284998, MRPS9, GPR45, TGFBRAP1, C2orf49	rs1451533-A	0.285356991217557	1E-8		0.018939452	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1389	chr2	105473697	105473698	rs732278	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q12.1		rs732278-T	0.42	2E-27		10.85	z score increase	Affymetrix [9061022] (imputed)	N
1389	chr2	105473697	105473698	rs732278	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q12.1	NR	rs732278-T	0.4298	1E-17				NR [9056863] (imputed)	N
1389	chr2	105473697	105473698	rs732278	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q12.1	NR	rs732278-T	0.4298	1E-17				NR [9056863] (imputed)	N
1389	chr2	105473697	105473698	rs732278	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q12.1	NR	rs732278-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1389	chr2	105481441	105481442	rs1159964	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q12.1		rs1159964-C	0.42	4E-20		9.19	z score increase	Affymetrix [9061022] (imputed)	N
1389	chr2	105487650	105487651	rs1160328	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q12.1	TAGLN2, IGSF9	rs1160328-?		3E-8				NR [7428630] (imputed)	N
1389	chr2	105501614	105501615	rs6743963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.1		rs6743963-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1389	chr2	105512723	105512724	rs17631425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q12.1		rs17631425-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1390	chr2	105587802	105587803	rs140380950	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q12.1		rs140380950-C	0.03673	2E-8		0.3568	[0.23-0.48] unit decrease	Illumina [18238287] (imputed)	N
1390	chr2	105587802	105587803	rs140380950	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q12.1		rs140380950-C	0.03673	2E-8		0.3597	[0.23-0.49] unit decrease	Illumina [18238287] (imputed)	N
1390	chr2	105590912	105590913	rs72832230	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.1	NR	rs72832230-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1390	chr2	105630249	105630250	rs116572165	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC010884.1	rs116572165-?	NR	1E-11	(male)	3.85865	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1392	chr2	105799791	105799792	rs2679850	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q12.1	Intergenic	rs2679850-?		4E-6		2.2222223	[1.59-3.12]	Illumina [7645193] (imputed)	N
1392	chr2	105811218	105811219	rs2576789	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	2q12.1	MIR4435-1	rs2576789-A	0.41	2E-6	(AA)			Illumina [NR] (imputed)	N
1392	chr2	105837597	105837598	rs6712932	17668382	Salonen JT	2007-06-26	Am J Hum Genet	Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium.	Type 2 diabetes	201 Finland founder cases, 200 Finland founder controls, 200 Ashkenazi Jewish cases, 197 Ashkenazi Jewish controls, 99 European ancestry cases, 100 European ancestry controls	2,573 European ancestry cases, 2,776 European ancestry controls	2q12.1	intergenic	rs6712932-?	NR	6E-6		1.52	[1.27-1.82]	Illumina [315917]	N
1392	chr2	105864825	105864826	rs6758290	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	2q12.1	NR	rs6758290-T	0.6946	4E-7	(Japanese)	0.053	[0.033-0.073] year increase	Illumina [at least 532488] (imputed)	N
1392	chr2	105864825	105864826	rs6758290	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q12.1	GPR45	rs6758290-T	0.5	7E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1392	chr2	105870778	105870779	rs2679894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q12.1		rs2679894-?	NR	5E-32				NR [~ 8900000] (imputed)	N
1392	chr2	105870778	105870779	rs2679894	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	2q12.1	NR	rs2679894-A	0.6922	4E-7	(Japanese)	0.054	[0.032-0.076] year increase	Illumina [at least 532488] (imputed)	N
1392	chr2	105870778	105870779	rs2679894	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	2q12.1	GPR45, TGFBRAP1	rs2679894-?	NR	2E-11		0.032	[0.042-0.023] unit decrease	Illumina [12039492]	N
1392	chr2	105871128	105871129	rs2438086	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2q12.1	NR	rs2438086-G	0.5758300000000001	7E-13		0.0218279	[0.016-0.028] unit increase	Affymetrix [16577424] (imputed)	N
1392	chr2	105877869	105877870	rs17636747	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	2q12.1	TGFBRAP1	rs17636747-?	NR	4E-6	(Hispanic)	8.35	[3.41-20.46]	Illumina [2485249] (imputed)	N
1392	chr2	105897739	105897740	rs1020064	19754311	Le Clerc S	2009-09-15	J Infect Dis	Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).	AIDS	85 European ancestry cases, 2,049 European ancestry controls	NA	2q12.1	TGFBRAP1	rs1020064-G	0.77	7E-6		2.94	[1.75-5.00]	Illumina [291119]	N
1393	chr2	105910512	105910513	rs1030877	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q12.1	TGFBRAP1	rs1030877-G	0.35	6E-6	(IGFBP-1 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1393	chr2	105923079	105923080	rs62154720	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q12.2	TGFBRAP1	rs62154720-?	NR	7E-9		0.01816122	[0.012-0.024] unit decrease	NR [7306098]	N
1393	chr2	105923079	105923080	rs62154720	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.2	Intergenic	rs62154720-T	0.1268	3E-8	(MTAG)	0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1393	chr2	105923079	105923080	rs62154720	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q12.2	Intergenic	rs62154720-T	0.1246	8E-14	(MTAG)	0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1393	chr2	105925526	105925527	rs141086993	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q12.2	NR	rs141086993-T	0.01394	5E-9	(HNRNPD)	0.1461	NR unit increase	Illumina [1671387] (imputed)	N
1393	chr2	105928903	105928904	rs114792668	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.2	NR	rs114792668-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1393	chr2	105938106	105938107	rs2679876	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	2q12.2	TGFBRAP1	rs2679876-A	0.26	4E-6		0.0386	[0.022-0.055] unit increase	Illumina [6380737] (imputed)	N
1393	chr2	105939236	105939237	rs4851057	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q12.2	NA	rs4851057-T	0.1265	3E-10		0.0163	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
1393	chr2	105943124	105943125	rs4851058	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q12.2	NR	rs4851058-?	NR	4E-6		4.631	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1393	chr2	105948480	105948481	rs116556698	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2q12.2	TGFBRAP1	rs116556698-T	NR	5E-8		0.0242474	[0.015-0.033] unit decrease	Affymetrix [10061374] (imputed)	N
1393	chr2	105969361	105969362	rs62155873	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q12.2		rs62155873-C	0.877	3E-8		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1393	chr2	105969361	105969362	rs62155873	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	2q12.2	C2orf49	rs62155873-T	0.127	2E-9		0.0334	[0.023-0.044] unit increase	Illumina [~ 250000] (imputed)	N
1393	chr2	105969361	105969362	rs62155873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q12.2		rs62155873-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1393	chr2	105969361	105969362	rs62155873	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.2		rs62155873-T	0.1221	2E-12		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1393	chr2	105971015	105971016	rs4851759	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q12.2	NR	rs4851759-A	0.121	4E-9		0.00977517	[0.0065-0.013] unit increase	NR [9732723] (imputed)	N
1393	chr2	105971015	105971016	rs4851759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.2		rs4851759-A	0.1221	3E-13	(conditional-joint)	0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1393	chr2	105973093	105973094	rs62155874	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q12.2		rs62155874-A	0.873	5E-16		0.024	[0.018-0.03] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1393	chr2	105973275	105973276	rs111404724	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q12.2	NR	rs111404724-A	0.01394	5E-9	(HNRNPD)	0.1461	NR unit increase	Illumina [1671387] (imputed)	N
1393	chr2	105977775	105977776	rs3087523	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q12.2	FHL2	rs3087523-A	0.121	7E-9		0.017951068	[0.012-0.024] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1393	chr2	105977775	105977776	rs3087523	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q12.2	NR	rs3087523-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1393	chr2	105977775	105977776	rs3087523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q12.2		rs3087523-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1393	chr2	105984623	105984624	rs55680124	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2q12.2	FHL2	rs55680124-C	NR	3E-9		0.0101963	[0.0068-0.0136] unit increase	Affymetrix [10061374] (imputed)	N
1393	chr2	105989715	105989716	rs6738207	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q12.2	FHL2	rs6738207-A	0.4007	4E-11		0.0127	[0.009-0.0164] unit increase	Affymetrix [18391927] (imputed)	N
1393	chr2	105989715	105989716	rs6738207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.2		rs6738207-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1393	chr2	105999008	105999009	rs4640402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q12.2	FHL2	rs4640402-C	NR	3E-9		0.0168525	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1393	chr2	106007748	106007749	rs186607487	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2q12.2	FHL2	rs186607487-A	0.9917	5E-6		0.3217	[0.18-0.46] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1394	chr2	106046332	106046333	rs4851770	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	2q12.2		rs4851770-T	NR	9E-6		1.514	[0.85-2.18] unit decrease	NR [534934]	N
1394	chr2	106055683	106055684	rs17651437	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder x sex interaction	19,924 European ancestry cases, 30,547 European ancestry controls	NA	2q12.2	FHL2	rs17651437-T	0.5215	4E-7		0.1553	[0.096-0.215] unit increase	NR [NR] (imputed)	N
1394	chr2	106070620	106070621	rs17697383	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2q12.2	FHL2, LOC285000	rs17697383-C	0.950044125	9E-6		1.236974	[1.13-1.36]	Illumina [10439017] (imputed)	N
1394	chr2	106099017	106099018	rs111945524	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2q12.2	NR	rs111945524-T	0.0453	9E-8		0.0151	[0.0096-0.0206] unit decrease	NR [7666894] (imputed)	N
1394	chr2	106104855	106104856	rs13006682	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q12.2	FHL2, LOC285000	rs13006682-C	0.34	7E-14		0.51	[0.37-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1394	chr2	106104855	106104856	rs13006682	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q12.2	FHL2, LOC285000	rs13006682-C	0.3376	2E-11		0.4749	[0.34-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1394	chr2	106105816	106105820	rs201337980	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q12.2	NR	rs201337980-AGAAA	NR	6E-7		0.443	unit decrease	Illumina [NR]	N
1394	chr2	106116653	106116654	rs12468936	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to lamotrigine in epilepsy	471 European ancestry cases, 929 European ancestry controls	NA			rs12468936-?	NR	3E-6				Illumina [NR] (imputed)	N
1394	chr2	106126879	106126880	rs150194832	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	2q12.2	FHL2	rs150194832-G	0.9067000000000001	1E-9		0.2147	[0.15-0.28] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1394	chr2	106127456	106127457	rs6747242	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q12.2	FHL2	rs6747242-A	0.1072	2E-8		0.1758	[0.11-0.24] mmHg decrease	Affymetrix [NR] (imputed)	N
1394	chr2	106127915	106127916	rs72819762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q12.2		rs72819762-A	NR	2E-8		0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1394	chr2	106141003	106141004	rs10164546	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q12.2	LOC285000	rs10164546-T	0.07692	9E-6	(African)			Illumina [4404269] (imputed)	N
1395	chr2	106193551	106193552	rs3943516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q12.2		rs3943516-G	0.342828	1E-10		0.015267877	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1395	chr2	106193551	106193552	rs3943516	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q12.2	NR	rs3943516-G	0.344548	7E-15		0.015081	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1395	chr2	106197540	106197541	rs13410405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q12.2	NR	rs13410405-G	0.109282	1E-10		0.019134	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1395	chr2	106199629	106199630	rs6741486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.2	NR	rs6741486-G	0.36546	4E-13				Affymetrix, Illumina [24588908] (imputed)	N
1395	chr2	106235427	106235428	rs115186657	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	2q12.2		rs115186657-?	NR	1E-8				Illumina [NR] (imputed)	N
1395	chr2	106295646	106295647	rs143335233	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-chlamydia trachomatis IgG seropositivity	8,735 White British ancestry individuals	NA	2q12.2	NCK2	rs143335233-C	0.983	5E-9		0.14	[0.095-0.185] unit decrease	NR [25472218] (imputed)	N
1396	chr2	106304262	106304263	rs10194961	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	2q12.2	Intergenic	rs10194961-?	NR	3E-7		0.002	unit increase	Affymetrix [7969123] (imputed)	N
1396	chr2	106333763	106333764	rs1532675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q12.2		rs1532675-C	0.099523	4E-10		0.023367539	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1396	chr2	106349805	106349806	rs6743613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q12.2		rs6743613-T	0.254503	2E-11		0.017415289	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1396	chr2	106366055	106366056	rs143080277	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	2q12.2	NCK2	rs143080277-?	NR	1E-12		0.520528	unit increase	NR [10687077] (imputed)	N
1396	chr2	106422364	106422365	rs116038905	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	2q12.2	NCK2	rs116038905-?	NR	3E-6		0.150266	unit decrease	NR [10687077] (imputed)	N
1397	chr2	106431855	106431856	rs6747023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs6747023-G	0.368343	3E-12				Affymetrix, Illumina [19872809] (imputed)	N
1397	chr2	106431855	106431856	rs6747023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA		NR	rs6747023-G	0.384308	1E-14		0.015871	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1397	chr2	106433908	106433909	rs7589790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q12.2		rs7589790-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1397	chr2	106457290	106457291	rs2377339	23533358	Liu Z	2013-02-28	ScientificWorldJournal	NCK2 is significantly associated with opiates addiction in African-origin men.	Addiction	1,393 European ancestry females, 1,131 European ancestry males, 568 African ancestry females, 535 African ancestry males	NA		NCK2	rs2377339-G	.0159	2E-8	(codependence - African ancestry men - adjusted analysis)			Illumina [859185]	N
1397	chr2	106457290	106457291	rs2377339	23533358	Liu Z	2013-02-28	ScientificWorldJournal	NCK2 is significantly associated with opiates addiction in African-origin men.	Addiction	1,393 European ancestry females, 1,131 European ancestry males, 568 African ancestry females, 535 African ancestry males	NA		NCK2	rs2377339-G	.0159	1E-11	(Opiates - African ancestry men - allelic test)	13.87	NR unit increase	Illumina [859185]	N
1397	chr2	106458805	106458806	rs11124063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q12.2	NCK2	rs11124063-C	0.6195	1E-9		0.02234978	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1397	chr2	106488026	106488027	rs191734722	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q12.2	NR	rs191734722-C	NR	3E-7		0.331	unit decrease	Illumina [NR]	N
1397	chr2	106489394	106489395	rs3754802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.2	NR	rs3754802-A	0.750858	2E-25				Affymetrix, Illumina [17210439] (imputed)	N
1397	chr2	106490450	106490451	rs80286292	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	2q12.2	NR	rs80286292-?	NR	4E-6		0.874	[0.5-1.25] unit decrease	Illumina [at least 560000] (imputed)	N
1397	chr2	106497648	106497649	rs13003975	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q12.2	NR	rs13003975-C	0.747882	7E-26		0.02321	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1397	chr2	106514911	106514912	rs34258073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q12.2	NCK2	rs34258073-T	0.242918	7E-20		0.024518691	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1397	chr2	106514911	106514912	rs34258073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q12.2	NCK2	rs34258073-T	0.242938	4E-27		0.029263865	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1397	chr2	106516924	106516925	rs11124066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q12.2		rs11124066-A	0.387636	6E-10		0.014088051	[0.0096-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1397	chr2	106516924	106516925	rs11124066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q12.2		rs11124066-A	0.387606	4E-11		0.014983928	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1397	chr2	106518892	106518893	rs6714861	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q12.2		rs6714861-G	0.36	2E-11		6.7	z score increase	Affymetrix [9061022] (imputed)	N
1397	chr2	106550426	106550427	rs11883667	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	2q12.2	Intergenic	rs11883667-?		2E-6				Illumina [301908]	N
1398	chr2	106587874	106587875	rs78202402	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q12.2	NR	rs78202402-T	0.01045	4E-9	(LRRK2)	0.0709	NR unit increase	Illumina [1671387] (imputed)	N
1398	chr2	106615273	106615274	rs1669539	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q12.2	NCK2, C2orf40	rs1669539-T	0.74	1E-6		1.52	[0.89-2.15] mmHg increase	Illumina [1019297] (imputed)	N
1398	chr2	106624731	106624732	rs36081987	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q12.2	NR	rs36081987-?	NR	2E-6		0.32	[0.24-0.42]	Illumina [539000] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	2q12.2	ECRG4	rs34487851-G	NR	2E-7				NR [6500000] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	2q12.2	ECRG4, C2orf40	rs34487851-G	0.27	2E-8				NR [6500000] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or cerebral amyloid angiopathy (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	2q12.2	ECRG4	rs34487851-G	0.27	3E-6				NR [6500000] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2q12.2	intergenic	rs34487851-G	0.7314	4E-6	(Ordinal II)	0.2523	[0.14-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	2q12.2	intergenic	rs34487851-G	0.7353	4E-6	(Case/control)	0.4143	[0.24-0.59] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	2q12.2	intergenic	rs34487851-G	0.7349	1E-6	(Ordinal)	0.297	[0.18-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1398	chr2	106642553	106642554	rs34487851	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	2q12.2	intergenic	rs34487851-G	0.7378	5E-6	(Complete)	0.4164	[0.24-0.6] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1398	chr2	106687455	106687456	rs13014521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q12.2	C2orf40	rs13014521-C	NR	5E-9		0.0276778	[0.018-0.037] unit increase	Affymetrix [323123] (imputed)	N
1398	chr2	106687455	106687456	rs13014521	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q12.2	NR	rs13014521-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1398	chr2	106687837	106687838	rs75460256	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	2q12.2		rs75460256-G	0.023935	1E-8		1.8737118	NR	Affymetrix [7846216] (imputed)	N
1398	chr2	106689735	106689736	rs66989638	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	2q12.2		rs66989638-A	0.1272	3E-11		1.1160549	[1.080327891-1.15296329]	Affymetrix, Illumina [NR] (imputed)	N
1398	chr2	106689735	106689736	rs66989638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q12.2	C2orf40	rs66989638-A	NR	2E-9		0.0260237	[0.017-0.035] unit increase	Affymetrix [321016] (imputed)	N
1398	chr2	106689735	106689736	rs66989638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.2		rs66989638-?	NR	1E-26				NR [~ 8900000] (imputed)	N
1399	chr2	106734064	106734065	rs17213078	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	2q12.2	NR	rs17213078-A	0.235	4E-6		0.164	[0.094-0.234] unit increase	Illumina [10677593] (imputed)	N
1399	chr2	106762786	106762787	rs4417735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q12.2	UXS1	rs4417735-C	NR	8E-11		0.0275978	[0.019-0.036] unit increase	Affymetrix [321016] (imputed)	N
1399	chr2	106781970	106781971	rs116283703	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q12.2	NR	rs116283703-C	0.01045	6E-9	(USP5)	0.1702	NR unit increase	Illumina [1671387] (imputed)	N
1399	chr2	106789764	106789765	rs3888361	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q12.2	NR	rs3888361-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1399	chr2	106794479	106794480	rs1442566	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UXS1	5,359 Icelandic ancestry individuals	NA	2q12.2		rs1442566-T	0.1089	1E-16		0.248421	[0.19-0.31] unit increase	Illumina [7506463] (imputed)	N
1399	chr2	106809959	106809960	rs6738485	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases	NA	2q12.2	UXS1	rs6738485-?	NR	3E-7				Illumina [4404269] (imputed)	N
1399	chr2	106809959	106809960	rs6738485	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q12.2	UXS1	rs6738485-T	0.324	4E-7				Illumina [4404269] (imputed)	N
1400	chr2	106836041	106836042	rs12617748	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q12.2	UXS1	rs12617748-G	0.86984375	2E-9	(UXS1, 8258_22_3)	0.21892843	[0.15-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1400	chr2	106886966	106886967	rs66569888	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	2q12.2	NR	rs66569888-A	0.2118	1E-7		0.1955	[0.12-0.27] unit increase	Illumina [10677593] (imputed)	N
1400	chr2	106889941	106889942	rs13401874	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR++ monocyte %monocyte	3,595 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q12.2		rs13401874-A	0.018	3E-8		0.5312	[0.34-0.72] unit decrease	Illumina [18380843] (imputed)	N
1400	chr2	106894839	106894840	rs180727965	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q12.2		rs180727965-A	0.0201212	4E-8		0.0726664	[0.047-0.098] unit increase	Illumina [7980478] (imputed)	N
1400	chr2	106897261	106897262	rs11124101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.2		rs11124101-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1400	chr2	106899721	106899722	rs13406957	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	2q12.2		rs13406957-?	NR	2E-6		0.25571647	[0.15-0.36] unit increase	Illumina [9939936] (imputed)	N
1400	chr2	106908548	106908549	rs113784139	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	2q12.2	NR	rs113784139-?		3E-6		17.3441	[10.16-24.53] unit decrease	NR [NR] (imputed)	N
1400	chr2	106908548	106908549	rs113784139	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	2q12.2	NR	rs113784139-?		5E-6		7.8275	[6.94-8.71]	NR [NR] (imputed)	N
1400	chr2	106909657	106909658	rs894391	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Right lateral prefrontal cortical growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	2q12.2	PLGLA, UXS1	rs894391-?	NR	7E-6				Illumina [at least 653030]	N
1401	chr2	106959251	106959252	rs58170570	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q12.2	NR	rs58170570-G	NR	9E-6	(GEE model)	1.0055	[0.56-1.45] unit increase	NR [NR] (imputed)	N
1401	chr2	106989362	106989362	rs147701520	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q12.2	NR	rs147701520-TC	NR	4E-61		0.384	unit decrease	Illumina [NR]	N
1403	chr2	107218830	107218831	rs1117160	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q12.2	NR	rs1117160-?	NR	2E-6				Affymetrix [NR]	N
1403	chr2	107263239	107263240	rs11686221	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	2q12.2	Intergenic	rs11686221-?	NR	5E-6		0.006	unit increase	Affymetrix [7969123] (imputed)	N
1403	chr2	107318021	107318022	rs77775810	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q12.3	ST6GAL2	rs77775810-C	0.0349053839430794	4E-7	(G_Bifidobacterium_HB)	0.794166	[0.49-1.1] unit decrease	Illumina [7711310] (imputed)	N
1404	chr2	107348529	107348530	rs190160997	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2q12.3	ST6GAL2	rs190160997-A	0.011	2E-10	(YKL-40)	45.776	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1405	chr2	107488169	107488170	rs116200463	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2q12.3	ST6GAL2	rs116200463-T	0.013	6E-9	(YKL-40)	40.224	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
1405	chr2	107501913	107501914	rs76390238	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	2q12.3	NR	rs76390238-G		6E-6		0.6031	[0.34-0.87] SD units decrease	NR [10700000] (imputed)	N
1405	chr2	107503323	107503324	rs1034811	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q12.3	Intergenic	rs1034811-T	0.6734	8E-12	(MTAG)	0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr2	107503323	107503324	rs1034811	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q12.3	Intergenic	rs1034811-T	0.6765	1E-12	(MTAG)	0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr2	107516532	107516533	rs12712262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q12.3	Intergenic	rs12712262-C	0.2425	1E-14		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr2	107516925	107516926	rs12328439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q12.3	Intergenic	rs12328439-T	0.8602	3E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr2	107539300	107539301	rs9789595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q12.3	Intergenic	rs9789595-T	0.6066	6E-20	(MTAG)	0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr2	107539300	107539301	rs9789595	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q12.3	Intergenic	rs9789595-T	0.6123	4E-19	(MTAG)	0.012	[0.0095-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1405	chr2	107564114	107564115	rs12712269	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q12.3		rs12712269-T	0.3962	7E-14		0.0107	[0.008-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1405	chr2	107570089	107570090	rs1034816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q12.3		rs1034816-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1405	chr2	107608284	107608285	rs4676097	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q12.3	NR	rs4676097-?	NR	4E-7		5.055	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1406	chr2	107613911	107613912	rs17033621	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q12.3	ENSG00000226905	rs17033621-T	NR	9E-10		0.017926406	[0.012-0.024] unit increase	Affymetrix [NR]	N
1406	chr2	107624617	107624618	rs2971640	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q12.3	NR	rs2971640-?		4E-9		0.0126576	[0.0084-0.0169] unit decrease	Affymetrix [19400418] (imputed)	N
1406	chr2	107649439	107649440	rs12622528	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	2q12.3	NR	rs12622528-?	NR	2E-6		7.531	[4.55-10.51] unit decrease	Illumina [498648]	N
1406	chr2	107678487	107678488	rs1357692	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	2q12.3	intergenic	rs1357692-?	NR	9E-6		1.16	[NR]	Illumina [2543888] (imputed)	N
1406	chr2	107680237	107680238	rs10496410	31372216	Haaland OA	2019-06-24	F1000Res	A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption.	Cleft lip with or without cleft palate x maternal periconceptional alcohol use interaction (parent of origin effect)	825 European ancestry case-parent duos or trios, 1,024 Asian ancestry case-parent duos or trios, 59 case-parent duos or trios	NA	2q12.3	NR	rs10496410-?	NR	8E-7	(EA)	6.04	[2.96-12.32]	NR [341191]	N
1408	chr2	107888309	107888310	rs34945910	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	2q12.3	NR	rs34945910-T	0.7342	6E-6		0.1699	[0.096-0.244] unit decrease	Illumina [NR] (imputed)	N
1408	chr2	107911720	107911721	rs138004766	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	2q12.3	NR	rs138004766-T	NR	1E-5		0.19	[0.11-0.27] unit increase	Illumina [6319684] (imputed)	N
1408	chr2	107942482	107942483	rs185818224	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		MIR548AU	rs185818224-A	0.02	4E-6		0.37	[0.21-0.53] unit increase	Illumina [1679420] (imputed)	N
1408	chr2	107957583	107957584	rs72835697	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2q12.3	AC006227.1	rs72835697-T	0.8353	9E-6		0.0705	[0.039-0.102] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1408	chr2	107982687	107982688	rs111940429	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour and bipolar disorder	398 European ancestry cases, 1,811 European ancestry controls	NA	2q12.3	AC096669.1	rs111940429-T	0.04	1E-8		2.857143	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1409	chr2	108099106	108099107	rs116112266	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	2q12.3	MIR548AU, GACAT1	rs116112266-G	NR	8E-7		0.942	[0.57-1.32] unit decrease	Illumina [27700000] (imputed)	N
1410	chr2	108201978	108201979	rs62158800	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	2q12.3	NR	rs62158800-T	0.07244	2E-6		0.2694	[0.16-0.38] unit decrease	Illumina [10677593] (imputed)	N
1411	chr2	108271186	108271187	rs540296694	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q12.3	NR	rs540296694-A	NR	1E-6		0.537	unit decrease	Illumina [NR]	N
1414	chr2	108737986	108737987	rs1486195	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2q12.3	AC019100.3	rs1486195-G	0.38746	1E-8		0.03534906	[0.023-0.048] unit increase	Affymetrix [7288503] (imputed)	N
1415	chr2	108827986	108827987	rs76304485	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	2q12.3		rs76304485-?	NR	5E-9		1.5736	[1.04-2.1] unit decrease	Affymetrix [NR] (imputed)	N
1415	chr2	108875243	108875244	rs6722745	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	2q12.3	SULT1C3	rs6722745-C	0.338	1E-7		0.27	[0.17-0.37] unit increase	Illumina [247039]	N
1415	chr2	108875243	108875244	rs6722745	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	2q12.3	SULT1C3	rs6722745-C	0.28	2E-7	(EA)	0.17	[0.11-0.23] unit increase	Illumina [247039]	N
1415	chr2	108884041	108884042	rs4638749	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	2q12.3	SULT1C3	rs4638749-G	0.76	6E-7	(EA, DBP, Age 60-69)	0.81	[0.5-1.12] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1415	chr2	108909400	108909401	rs13424530	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (composite)	2,755 individuals	NA	2q12.3	SULT1C2	rs13424530-A	0.44	4E-6		0.2	[0.12-0.28] unit increase	Illumina [5918868] (imputed)	N
1415	chr2	108916043	108916044	rs4149423	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	2q12.3	NR	rs4149423-?	NR	1E-7	(FDR adjusted)			Illumina [671038]	N
1416	chr2	108931104	108931105	rs752273	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	2q12.3	Intergenic	rs752273-?		1E-6				NR [NR]	N
1416	chr2	108943202	108943203	rs17770672	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	2q12.3	SULT1C2	rs17770672-A	NR	2E-8	(PWY-5862_superpathway_of_demethylmenaquinol-9_biosynthesis)	5.612498	NR Z-score increase	Illumina [8100000] (imputed)	N
1416	chr2	108989079	108989080	rs138698575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q12.3	RP11-465O11.2	rs138698575-A	8.71999999999984E-4	1E-9		0.23691785	[0.16-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
1416	chr2	108997261	108997262	rs4149433	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q12.3	NR	rs4149433-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
1416	chr2	108997261	108997262	rs4149433	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q12.3	NR	rs4149433-?	NR	2E-7	(Hispanic)	0.0603	[0.038-0.083] unit increase	Illumina [at least 7383741] (imputed)	N
1416	chr2	108997261	108997262	rs4149433	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe attachment	4,919 Latin American individuals	NA	2q12.3	NR	rs4149433-?	NR	3E-7	(FDR adjusted)			Illumina [671038]	N
1416	chr2	108997261	108997262	rs4149433	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA	2q12.3	NR	rs4149433-?	NR	4E-8	(FDR adjusted)			Illumina [671038]	N
1416	chr2	108997261	108997262	rs4149433	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear protrusion	4,919 Latin American individuals	NA	2q12.3	NR	rs4149433-?	NR	2E-7	(FDR adjusted)			Illumina [671038]	N
1416	chr2	109006664	109006665	rs13021399	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2q12.3	SULT1C4	rs13021399-T	0.56	1E-7		0.081	[0.052-0.11] unit decrease	Illumina [32241096] (imputed)	N
1416	chr2	109020381	109020382	rs67143178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q12.3		rs67143178-C	NR	7E-12		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1416	chr2	109035596	109035597	rs62150773	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Bone mineral density (Ward's triangle area)	3,000 Qatari ancestry individuals	NA	2q12.3		rs62150773-?	NR	2E-8				Illumina [1084750]	N
1416	chr2	109039089	109039090	rs13006511	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q12.3	SMIM12P1	rs13006511-T	0.8642	7E-6		0.0486	[0.027-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1416	chr2	109039089	109039090	rs13006511	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q12.3	SMIM12P1	rs13006511-T	0.8642	7E-6		0.0486	[0.027-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1416	chr2	109051752	109051753	rs12478285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q12.3		rs12478285-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1417	chr2	109064562	109064563	rs11123694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q12.3	GCC2	rs11123694-T	0.5658	1E-10		0.02344773	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1417	chr2	109065003	109065004	rs2465956	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q12.3	GCC2	rs2465956-T	0.809888	2E-16		0.00241309	[0.0018-0.003] unit increase	Affymetrix [13995440] (imputed)	N
1417	chr2	109066233	109066234	rs763102966	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q12.3	GCC2	rs763102966-?	NR	1E-12		0.0232	[0.018-0.029] unit increase	Affymetrix [5701386] (imputed)	N
1417	chr2	109066234	109066235	rs377365761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q12.3		rs377365761-A	NR	3E-10		0.0188	[0.013-0.025] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1417	chr2	109078285	109078286	rs564281570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q12.3		rs564281570-T	NR	8E-14		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1417	chr2	109116613	109116615	rs201760694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q12.3	GCC2	rs201760694-C	0.486806	2E-9		0.0142525835	[0.0096-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1417	chr2	109130341	109130342	rs2577595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q12.3	AC012487.2	rs2577595-T	0.598517	1E-19		0.02068492	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1417	chr2	109138676	109138677	rs2258404	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q12.3	NR	rs2258404-G	0.597259	2E-18				Affymetrix, Illumina [17210439] (imputed)	N
1417	chr2	109151172	109151173	rs12104672	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q12.3	LIMS1	rs12104672-T	0.573534	3E-8		0.014383	[0.0093-0.0195] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1417	chr2	109168507	109168508	rs7601412	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q12.3	LIMS1	rs7601412-A	0.1428	2E-10		0.0187273	[0.013-0.025] unit increase	Affymetrix [NR] (imputed)	N
1417	chr2	109174235	109174236	rs2577588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q12.3		rs2577588-T	NR	3E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1417	chr2	109174614	109174615	rs6542772	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA	2q12.3	GCC2, LIMS1-AS1, LIMS1	rs6542772-C	0.17	2E-9		1.27	[1.17-1.37]	Affymetrix [536506]	N
1417	chr2	109174968	109174969	rs111995966	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	2q12.3	NR	rs111995966-G		3E-6		0.1452	[0.084-0.206] SD units decrease	NR [10700000] (imputed)	N
1418	chr2	109206138	109206139	rs2718717	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q12.3	LIMS1	rs2718717-A	0.856959	3E-10		0.0187861	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1418	chr2	109216539	109216540	rs2918738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q12.3	LIMS1	rs2918738-G	0.021139	3E-9		0.04906844	[0.033-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
1418	chr2	109232074	109232075	rs826681	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q12.3	NR	rs826681-C	NR	1E-7		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1418	chr2	109232074	109232075	rs826681	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q12.3	NR	rs826681-C	NR	3E-8		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1418	chr2	109232387	109232388	rs826682	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q12.3	LIMS1	rs826682-A	0.8221	1E-9		0.0175	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1418	chr2	109257151	109257152	rs1866188	30248107	Wu S	2018-09-24	PLoS Genet	Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans.	Eyebrow thickness	2,961 Han Chinese ancestry individuals, 721 Uyghur ancestry individuals, 2,301 Latin American ancestry individuals	4,411 Dutch ancestry individuals	2q12.3	EDAR	rs1866188-A	NR	6E-11	(East Asian, Hispanic and Other admixed)			Illumina [up to 7224952] (imputed)	N
1418	chr2	109263456	109263457	rs1095557	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q12.3	LIMS1	rs1095557-G	0.86	5E-10		6.21	z-score increase	Affymetrix [4311822] (imputed)	N
1418	chr2	109276178	109276179	rs145559017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	2q12.3		rs145559017-?	NR	5E-9		0.212971	[0.14-0.29] unit increase	NR [9800000] (imputed)	N
1418	chr2	109276178	109276179	rs145559017	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	2q12.3		rs145559017-?	NR	9E-15		0.264065	[0.19-0.33] unit decrease	NR [9800000] (imputed)	N
1418	chr2	109296317	109296318	rs180751906	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q12.3	NR	rs180751906-C	NR	2E-8		0.422	unit decrease	Illumina [NR]	N
1419	chr2	109359282	109359283	rs150844750	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	2q13	RANBP2	rs150844750-T	NR	2E-6	(females)	0.25	[0.15-0.35] unit decrease	Illumina [7531543] (imputed)	N
1419	chr2	109408775	109408776	rs1724184	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2q13	NR	rs1724184-T	0.25	2E-8		0.021	[0.013-0.029] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1420	chr2	109451117	109451118	rs72627476	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q13	NR	rs72627476-?	NR	5E-8	(Hispanic)	0.06431	[0.041-0.087] unit increase	Illumina [at least 7383741] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair/balding pattern: Pattern 1 (UKB data field 2395_1)	66,172 European ancestry cases, 140,864 European ancestry controls	NA	2q13		rs3827760-G	0.003677	1E-14		0.41	[0.31-0.51] unit increase	NR [11842647] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Curly vs straight hair	1,108 Japanese ancestry individuals	NA	2q13		rs3827760-A	0.207	1E-16		2.917	[2.66-3.17]	Illumina [6258233] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2q13	EDAR	rs3827760-G	0.29	2E-7		0.097	[0.06-0.134] unit increase	Illumina [32241096] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q13		rs3827760-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q13	NR	rs3827760-G	0.00420305	4E-16		0.191261	[0.15-0.24] unit decrease	NR [19129689] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Thick vs thin eyebrows	1,153 Japanese ancestry female thick eyebrow individuals, 2,788 Japanese ancestry female thin eyebrow individuals	NA	2q13	EDAR	rs3827760-G	0.8	2E-9		1.4084507	[1.27-1.59]	Affymetrix [536506]	N
1420	chr2	109513600	109513601	rs3827760	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q13	EDAR	rs3827760-?	NR	7E-10				Illumina [at least 7383741] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	27487801	Wu S	2016-11-01	Hum Genet	Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations.	Straight vs curly hair	2,675 Han Chinese ancestry cases, 224 Han Chinese ancestry controls	357 Uyghur ancestry cases, 352 Uyghur ancestry controls	2q13	EDAR	rs3827760-G	NR	5E-16	(East Asian)			Illumina [81706044] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	27487801	Wu S	2016-11-01	Hum Genet	Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations.	Straight vs curly hair	2,675 Han Chinese ancestry cases, 224 Han Chinese ancestry controls	357 Uyghur ancestry cases, 352 Uyghur ancestry controls	2q13	EDAR	rs3827760-G	NR	2E-12	(Uyghur ancestry)			Illumina [81706044] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	lower facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	2q13	EDAR	rs3827760-G	NR	4E-10	(chin protrusion)	0.0076	NR NR decrease	Illumina [9117642] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	2q13	EDAR	rs3827760-?	NR	2E-15		0.165	[0.124-0.206] unit increase	Illumina [12039491] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2q13	EDAR	rs3827760-?	NR	1E-8		2.2371366	[1.68-2.99]	Illumina [13436641] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Scalp hair shape	6,357 Latin American individuals	NA	2q13	CCDC138, EDAR, LIMS1, MIR4265, RANBP2, SH3RF3, SH3RF3-AS1, ASN	rs3827760-?	NR	3E-119				Illumina [9143600] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	2q13	CCDC138, EDAR, LIMS1, MIR4265, RANBP2, SH3RF3, SH3RF3-AS1, ASN	rs3827760-?	NR	1E-7				Illumina [9143600] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	2q13	GCC2, LIMS1, SULT1C2, SULT1C2P1, SULT1C3, SULT1C4	rs3827760-?	NR	1E-7				Illumina [9143600] (imputed)	N
1420	chr2	109513600	109513601	rs3827760	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	2q13	EDAR	rs3827760-G	0.4	1E-12		0.117	unit decrease	Illumina [671038]	N
1420	chr2	109513600	109513601	rs3827760	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe attachment	4,919 Latin American individuals	NA	2q13	EDAR	rs3827760-G	0.4	2E-9		0.066	unit decrease	Illumina [671038]	N
1420	chr2	109513600	109513601	rs3827760	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA	2q13	EDAR	rs3827760-G	0.4	1E-12		0.103	unit decrease	Illumina [671038]	N
1420	chr2	109513600	109513601	rs3827760	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear protrusion	4,919 Latin American individuals	NA	2q13	EDAR	rs3827760-G	0.40	1E-10		0.108	unit decrease	Illumina [671038]	N
1420	chr2	109513600	109513601	rs3827760	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	2q13	EDAR	rs3827760-G	0.4	1E-11				Illumina [671038]	N
1420	chr2	109525656	109525657	rs72836548	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q13		rs72836548-A	NR	9E-6		3.1118	[1.77-4.46] unit increase	Illumina [NR] (imputed)	N
1420	chr2	109539652	109539653	rs260643	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	2q13	NR	rs260643-A	0.0998	3E-12		1.15	[1.11-1.19]	Affymetrix, Illumina [7072771] (imputed)	N
1420	chr2	109539652	109539653	rs260643	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Straight vs curly hair	2,532 Japanese ancestry female straight hair individuals, 2,346 Japanese ancestry female curly hair individuals	NA	2q13	EDAR	rs260643-A	0.8	2E-103		3.333333	[3.03-3.7]	Affymetrix [536506]	N
1420	chr2	109571507	109571508	rs17034666	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q13	EDAR	rs17034666-A	0.23	2E-8		27.93	[18.21-37.65] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1420	chr2	109571507	109571508	rs17034666	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q13		rs17034666-?	NR	7E-6		19.3	[10.87-27.73] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1420	chr2	109571507	109571508	rs17034666	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q13	NR	rs17034666-?	NR	2E-6	(Hispanic)	0.05358	[0.031-0.076] unit increase	Illumina [at least 7383741] (imputed)	N
1420	chr2	109575735	109575736	rs365060	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Beard thickness	2,922 Latin American individuals	NA	2q13	CCDC138, EDAR, LIMS1, MIR4265, RANBP2, SH3RF3, SH3RF3-AS1, ASN	rs365060-?	NR	1E-15				Illumina [9143600] (imputed)	N
1421	chr2	109581318	109581319	rs260692	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q13	EDAR	rs260692-T	0.05867603	2E-17	(EA, Tumor necrosis factor receptor superfamily member EDAR)	0.786	[0.61-0.96] unit increase	Affymetrix [509946]	N
1421	chr2	109585405	109585406	rs77304476	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDAR	5,364 Icelandic ancestry individuals	NA	2q13		rs77304476-G	0.01061	9E-93		1.82974	[1.65-2.01] unit increase	Illumina [7506463] (imputed)	N
1421	chr2	109599255	109599256	rs260674	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Tragus size	4,919 Latin American individuals	NA	2q13	NR	rs260674-?	NR	7E-7	(FDR adjusted)			Illumina [671038]	N
1421	chr2	109600807	109600808	rs79844428	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	2q13	NR	rs79844428-?	NR	3E-6		0.2358	[0.14-0.33] unit increase	Illumina [~ 7800000] (imputed)	N
1421	chr2	109602862	109602863	rs116475987	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q13	EDAR	rs116475987-C	0.015	7E-59	(Tumor necrosis factor receptor superfamily member EDAR, EDAR.2977.7.2)	1.57	[1.37-1.77] unit increase	Affymetrix [10572788] (imputed)	N
1421	chr2	109605766	109605767	rs3749110	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q13		rs3749110-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1421	chr2	109607806	109607807	rs141332418	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q13	EDAR	rs141332418-C	0.9903125	5E-59	(EDAR, 2977_7_2)	2.0430195	[1.8-2.29] unit decrease	Illumina [> 1000000] (imputed)	N
1421	chr2	109609764	109609765	rs4676225	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EDAR	5,364 Icelandic ancestry individuals	NA	2q13		rs4676225-G	0.2788	6E-78		0.38784	[0.35-0.43] unit decrease	Illumina [7506463] (imputed)	N
1421	chr2	109609764	109609765	rs4676225	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q13	NR	rs4676225-A	0.754	3E-31	(Tumor necrosis factor receptor superfamily member EDAR, EDAR.2977.7.2)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
1421	chr2	109611096	109611097	rs6750059	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q13	EDAR	rs6750059-C	0.248996	1E-18	(EA, Tumor necrosis factor receptor superfamily member EDAR)	0.44	[0.34-0.54] unit decrease	Affymetrix [509946]	N
1421	chr2	109635256	109635257	rs4676049	20885792	Naj AC	2010-09-23	PLoS Genet	Dementia revealed: novel chromosome 6 locus for late-onset Alzheimer disease provides genetic evidence for folate-pathway abnormalities.	Alzheimer's disease (late onset)	931 cases, 1,104 controls	1,338 cases, 2,003 controls	2q13	intergenic	rs4676049-A	0.08	4E-8		1.76	[1.44-2.15]	Illumina [483399]	N
1421	chr2	109642353	109642354	rs79588402	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2q13		rs79588402-?	NR	9E-6		0.8191275	[0.46-1.18] unit increase	Illumina [9875426] (imputed)	N
1421	chr2	109646358	109646359	rs9653456	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional alcohol intake interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	2q13	EDAR, SH3RF3	rs9653456-?		4E-7	(EA)	2.4	[1.71-3.37]	Illumina [341191]	N
1421	chr2	109682861	109682862	rs260658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q13	NR	rs260658-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1422	chr2	109761937	109761938	rs138793296	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs138793296-G	NR	2E-8		0.365	unit decrease	Illumina [NR]	N
1422	chr2	109767172	109767173	rs11676676	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2q13	NR	rs11676676-T	0.158	4E-6		0.227681	[0.13-0.32] unit decrease	Illumina [~ 6600000] (imputed)	N
1422	chr2	109812125	109812126	rs4676076	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q13	NR	rs4676076-?	NR	8E-7		4.929	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1423	chr2	109918002	109918003	rs7601259	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q13	Intergenic	rs7601259-T	0.2003	3E-8	(MTAG)	0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1423	chr2	109932345	109932346	rs1025379	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q13		rs1025379-A	0.5	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
1423	chr2	109939008	109939009	rs72822702	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q13		rs72822702-C	NR	6E-6		1.7529	[1.01-2.5] unit increase	Illumina [NR] (imputed)	N
1423	chr2	109939423	109939424	rs10198683	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q13	SH3RF3	rs10198683-?		2E-10				NR [7428630] (imputed)	N
1423	chr2	109939842	109939843	rs11689995	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q13	VANGL2	rs11689995-?		4E-8				NR [7428630] (imputed)	N
1423	chr2	109939842	109939843	rs11689995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q13		rs11689995-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1423	chr2	109940006	109940007	rs11680041	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q13		rs11680041-G	0.47	8E-26		10.51	z score increase	Affymetrix [9061022] (imputed)	N
1423	chr2	109940006	109940007	rs11680041	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q13	NR	rs11680041-G	0.4907	3E-12				NR [9056863] (imputed)	N
1423	chr2	109941181	109941182	rs11123740	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q13	SH3RF3	rs11123740-?	NR	3E-6		0.014903312	[0.0087-0.0211] unit increase	Illumina [27896057] (imputed)	N
1423	chr2	109948306	109948307	rs79244518	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q13		rs79244518-T	NR	1E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1423	chr2	109948636	109948637	rs4676079	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q13	NR	rs4676079-A	0.4907	2E-14				NR [9056863] (imputed)	N
1423	chr2	109949226	109949227	rs60240458	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q13		rs60240458-C	0.47	7E-14		7.49	z score increase	Affymetrix [9061022] (imputed)	N
1423	chr2	109954065	109954066	rs4676276	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	2q13	SH3RF3	rs4676276-A	0.5162	1E-8		1.022845	[NR]	Illumina [12493444] (imputed)	N
1423	chr2	109954065	109954066	rs4676276	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q13	SH3RF3	rs4676276-C	0.48957	2E-9		0.0110136	[0.0074-0.0146] unit increase	NR [13737936] (imputed)	N
1423	chr2	109959750	109959751	rs13402256	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	2q13	SH3RF3	rs13402256-C	0.81584	4E-6		0.191229	[0.11-0.27] unit increase	Illumina [6952813] (imputed)	N
1424	chr2	109988513	109988514	rs55946490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q13		rs55946490-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1424	chr2	110044704	110044705	rs192049538	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs192049538-A	NR	3E-7		0.309	unit decrease	Illumina [NR]	N
1424	chr2	110049718	110049719	rs6542826	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	2q13	SH3RF3	rs6542826-G		7E-7		1.703	[NR]	Affymetrix [NR]	N
1424	chr2	110061641	110061642	rs72824756	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q13	NR	rs72824756-?	NR	1E-8		5379.0957	NR unit decrease	Illumina [2379855]	N
1424	chr2	110076750	110076751	rs11680908	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	2q13	NR	rs11680908-G		2E-6		0.2634	[0.15-0.37] SD units decrease	NR [10700000] (imputed)	N
1424	chr2	110099749	110099750	rs144936503	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q13	NR	rs144936503-?	NR	8E-6		0.534685	[0.3-0.77] unit increase	NR [13958389] (imputed)	N
1425	chr2	110105688	110105689	rs145144286	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SH3RF3	rs145144286-?	NR	8E-10		2.75166	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1426	chr2	110255566	110255567	rs28410095	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	2q13	SH3RF3	rs28410095-G	0.306	5E-6		0.535	[0.31-0.76] unit decrease	Illumina [622468]	N
1426	chr2	110284235	110284236	rs9330316	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q13	NR	rs9330316-?		5E-8				NR [8377093]	N
1426	chr2	110284235	110284236	rs9330316	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q13	SEPT10, SOWAHC	rs9330316-A	NR	5E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1426	chr2	110317486	110317487	rs72824788	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	896 European ancestry major depressive disorder cases, 934 European ancestry individuals	NA	2q13	NR	rs72824788-?		8E-6		2598.0	[NR] unit decrease	Illumina [4278941] (imputed)	N
1426	chr2	110317616	110317617	rs112462145	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs112462145-A	0.0235102	1E-10				Affymetrix, Illumina [24332387] (imputed)	N
1426	chr2	110317616	110317617	rs112462145	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs112462145-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1426	chr2	110318195	110318196	rs745699188	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs745699188-C	NR	1E-10		0.728	unit decrease	Illumina [NR]	N
1426	chr2	110325980	110325981	rs80060933	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SEPTIN10	rs80060933-?	NR	4E-10		1.56854	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1426	chr2	110332291	110332292	rs56280142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q13		rs56280142-T	NR	5E-8		0.0575	[0.037-0.078] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1427	chr2	110381571	110381572	rs10496434	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Helix rolling	4,919 Latin American individuals	NA	2q13	NR	rs10496434-?	NR	9E-7	(FDR adjusted)			Illumina [671038]	N
1427	chr2	110382216	110382217	rs919942	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2q13	SOWAHC	rs919942-A	0.63	8E-7		0.071	[0.044-0.098] unit increase	Illumina [32241096] (imputed)	N
1427	chr2	110399822	110399823	rs7580778	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	2q13	NR	rs7580778-?	NR	7E-7	(FDR adjusted)			Illumina [671038]	N
1427	chr2	110443495	110443496	rs4953766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q13	NR	rs4953766-C	0.411265	9E-13		0.013701	[0.0099-0.0175] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1427	chr2	110445504	110445505	rs72627489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q13		rs72627489-T	0.095411	5E-12		0.026831334	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr2	110446734	110446735	rs144442782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs144442782-T	0.0254209	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
1427	chr2	110446734	110446735	rs144442782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q13	NR	rs144442782-T	0.026404	1E-10		0.038677	[0.027-0.05] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1427	chr2	110447666	110447667	rs76496105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q13		rs76496105-G	NR	7E-16		0.0313	[0.024-0.039] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1427	chr2	110447666	110447667	rs76496105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q13		rs76496105-G	0.0935359999999999	5E-12		0.026787885	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1427	chr2	110447666	110447667	rs76496105	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs76496105-G	0.0750512	8E-15				Affymetrix, Illumina [24588908] (imputed)	N
1427	chr2	110457828	110457829	rs35379940	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q13	SOWAHC	rs35379940-C	0.0745815023498799	8E-7	(O_Lactobacillales_HB)	0.667501	[0.4-0.93] unit decrease	Illumina [7711310] (imputed)	N
1427	chr2	110463128	110463129	rs115753515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q13		rs115753515-T	NR	3E-9		0.0595	[0.04-0.079] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1427	chr2	110481531	110481532	rs546476261	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs546476261-AC	NR	6E-13		0.616	unit decrease	Illumina [NR]	N
1431	chr2	110929172	110929173	rs10496435	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q13	NR	rs10496435-A	0.38	8E-6		0.016587289	[0.0093-0.0239] unit increase	Affymetrix [up to 6544775] (imputed)	N
1431	chr2	110935357	110935358	rs147938850	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs147938850-G	NR	5E-7		0.389	unit decrease	Illumina [NR]	N
1434	chr2	111402870	111402871	rs140983998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs140983998-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1435	chr2	111458188	111458189	rs185949673	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs185949673-G	NR	3E-11		0.63	unit decrease	Illumina [NR]	N
1436	chr2	111592406	111592407	rs2175824	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	2q13		rs2175824-T	0.42	6E-12		0.0556	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1436	chr2	111598957	111598958	rs1554005	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q13	NR	rs1554005-T	NR	7E-12		0.0219	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1436	chr2	111598957	111598958	rs1554005	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	2q13	ACOXL	rs1554005-T	0.1994	2E-6		0.07	NR SD units decrease	Illumina [21568490] (imputed)	N
1436	chr2	111599281	111599282	rs10210955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs10210955-C	0.490315	1E-26		0.023723256	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111599281	111599282	rs10210955	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q13	ACOXL	rs10210955-C	0.4903	7E-16		0.02869848	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111599705	111599706	rs4849121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs4849121-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1436	chr2	111599705	111599706	rs4849121	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	2q13	ACOXL	rs4849121-G	NR	4E-7		1.15	[1.09-1.22]	Illumina [444882]	N
1436	chr2	111600466	111600467	rs115737857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q13	NR	rs115737857-A	NR	1E-9		0.0452	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1436	chr2	111600518	111600519	rs13395354	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q13	ACOXL	rs13395354-T	0.1842	2E-9		0.0159	[0.011-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1436	chr2	111601477	111601478	rs11123201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q13	ACOXL	rs11123201-A	0.360822	6E-13		0.016535265	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111601477	111601478	rs11123201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q13		rs11123201-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1436	chr2	111601797	111601798	rs10185010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs10185010-G	0.18835	1E-15		0.0311932	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr2	111604112	111604113	rs1554006	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs1554006-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1436	chr2	111604364	111604364	rs540315504	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	ACOXL	rs540315504-TG	0.176723	2E-31		0.03668734	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr2	111607400	111607401	rs7576541	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q13	ACOXL	rs7576541-T	0.6785	1E-19		0.03494809	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111607675	111607676	rs72832868	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	2q13		rs72832868-A	NR	9E-7		1.4069	NR	Affymetrix [7846216] (imputed)	N
1436	chr2	111607831	111607832	rs6732565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q13	NR	rs6732565-G	0.379412	7E-14		0.014871	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1436	chr2	111607831	111607832	rs6732565	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q13	ACOXL	rs6732565-A	NR	2E-6		0.075047	[0.045-0.105] unit increase	Illumina [8380626] (imputed)	N
1436	chr2	111607831	111607832	rs6732565	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q13	ACOXL	rs6732565-A	0.62	9E-9	(EA)	1.1	[1.07-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1436	chr2	111607831	111607832	rs6732565	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q13	ACOXL	rs6732565-A	0.61	3E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1436	chr2	111609384	111609385	rs12151613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs12151613-T	0.336594	2E-12		0.017221667	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111609384	111609385	rs12151613	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	ACOXL	rs12151613-T	0.336459	2E-16		0.02021581	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111609757	111609758	rs10180020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q13	ACOXL	rs10180020-A	0.715279	2E-41		0.032958414	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111609942	111609943	rs10197140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q13	ACOXL	rs10197140-C	0.339	8E-20		0.03432007	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111609942	111609943	rs10197140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q13	ACOXL	rs10197140-C	0.339	8E-25		0.03846339	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111609942	111609943	rs10197140	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	ACOXL	rs10197140-C	0.339	8E-24		0.03776018	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111610815	111610816	rs10183338	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q13		rs10183338-T	0.18916	3E-8		0.1206	[0.078-0.163] unit increase	Illumina [18349913] (imputed)	N
1436	chr2	111612050	111612050	rs145946844	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q13		rs145946844-T	0.662	7E-31		0.13	[-0.11--0.16] % decrease	Affymetrix [NR] (imputed)	N
1436	chr2	111612050	111612050	rs145946844	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	ACOXL	rs145946844-TTCCC	0.337156	5E-29		0.026104052	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr2	111615014	111615015	rs4849134	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q13		rs4849134-G	0.6454	2E-8		0.1004	[0.066-0.135] unit increase	Illumina [18332267] (imputed)	N
1436	chr2	111615014	111615015	rs4849134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs4849134-G	0.714669	8E-17		0.02042564	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr2	111615078	111615079	rs4849135	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q13	Intergenic	rs4849135-G	0.71	4E-8		1.1235955		Illumina [135870]	N
1436	chr2	111615420	111615421	rs62159471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs62159471-T	0.336804	4E-11		0.0318729	[0.028-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1436	chr2	111616103	111616104	rs13401811	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q13	ACOXL, BCL2L11	rs13401811-G	0.81	2E-18		1.41	[1.30-1.52]	Illumina [549934]	N
1436	chr2	111616140	111616141	rs1533299	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs1533299-T	0.378422	8E-11		0.014806078	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1436	chr2	111616140	111616141	rs1533299	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs1533299-T	0.384855	9E-11				Affymetrix, Illumina [24649327] (imputed)	N
1436	chr2	111617150	111617151	rs952249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs952249-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1436	chr2	111626733	111626734	rs2341873	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q13	ACOXL	rs2341873-C	0.7	2E-9		0.02349403	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1436	chr2	111660311	111660312	rs528758423	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q13		rs528758423-G	0.002119	3E-6		0.34003	[0.2-0.48] unit decrease	Affymetrix [15580782] (imputed)	N
1436	chr2	111664755	111664756	rs6720034	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q13	ACOXL	rs6720034-A	0.6594	2E-9		0.0146	[0.0099-0.0193] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1437	chr2	111680154	111680155	rs3789134	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2q13	ACOXL	rs3789134-T	NR	2E-9		1.09	1.06-1.12	Affymetrix [at least 665500] (imputed)	N
1437	chr2	111680817	111680818	rs2880192	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	2q13	ACOXL	rs2880192-A	0.65	4E-15		0.0071	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1437	chr2	111680817	111680818	rs2880192	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2q13	ACOXL	rs2880192-A	0.65	9E-12		0.00639	[0.0046-0.0082] unit increase	Affymetrix [at least 8002429] (imputed)	N
1437	chr2	111681837	111681838	rs2128814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	ACOXL	rs2128814-T	0.522981	2E-11		0.015576462	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr2	111694796	111694797	rs13413838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q13		rs13413838-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1437	chr2	111698039	111698040	rs3789129	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	2q13	ACOXL, BCL2L11, BIM	rs3789129-A	NR	2E-8		1.31		Illumina [1233578] (imputed)	N
1437	chr2	111706084	111706085	rs17041625	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q13	NR	rs17041625-G	0.152	2E-6	(IFNalpha_STAT4_of_CD8p_T)			Illumina [5084123] (imputed)	N
1437	chr2	111706897	111706897	rs397806072	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q13	ACOXL	rs397806072-CT	0.1253	2E-6		0.0643	[0.038-0.091] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1437	chr2	111706897	111706897	rs397806072	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2q13	ACOXL	rs397806072-CT	0.1255	2E-6		0.0639	[0.037-0.09] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1437	chr2	111707404	111707405	rs3789119	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	2q13	ACOXL	rs3789119-T	NR	4E-6		0.136	[0.079-0.193] unit decrease	Illumina [628922]	N
1437	chr2	111710862	111710863	rs13024140	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q13	ACOXL	rs13024140-G	0.584714	6E-9		0.0115609	[0.0077-0.0155] unit increase	Affymetrix [NR] (imputed)	N
1437	chr2	111711088	111711089	rs2341917	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	2q13	ACOXL	rs2341917-G	0.145	3E-7	(IIV)	0.29	[0.17-0.41] unit increase	Illumina [799713]	N
1437	chr2	111711088	111711089	rs2341917	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	2q13	ACOXL	rs2341917-G	0.145	2E-6	(HRTSE)	1.17	[0.68-1.66] unit increase	Illumina [799713]	N
1437	chr2	111725740	111725741	rs61741441	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		2q13	NR	rs61741441-G	NR	2E-6	(conditioned on rs1426654)	0.737998	[0.43-1.04] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
1437	chr2	111728481	111728482	rs4849303	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	2q13	ACOXL	rs4849303-?	0.47-0.54	1E-6	(Vegetable)	1.12	[1.08-1.18]	Affymetrix, Illumina [> 2700000] (imputed)	N
1437	chr2	111736822	111736823	rs56088557	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q13	ACOXL	rs56088557-G	0.2063	3E-15		0.03490228	[0.026-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111738370	111738371	rs3789098	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q13		rs3789098-G	0.841	7E-19				Affymetrix [10369434] (imputed)	N
1437	chr2	111742747	111742748	rs3838226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	ACOXL	rs3838226-AT	0.120494	5E-38		0.044863757	[0.038-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111750871	111750872	rs2062225	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q13	ACOXL	rs2062225-T	0.8807	7E-20		0.05004904	[0.039-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q13		rs150449635-C	NR	8E-67		0.1415	[0.13-0.16] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q13		rs150449635-T	0.978	3E-33				Affymetrix [10369434] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q13		rs150449635-T	0.978	1E-33				Affymetrix [10369434] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs150449635-C	0.022227	7E-89		0.15898065	[0.14-0.17] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	ACOXL	rs150449635-C	0.02223	4E-95		0.16464524	[0.15-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs150449635-C	0.0217775	2E-93				Affymetrix, Illumina [23467995] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q13	NR	rs150449635-C	0.022455	4E-97		0.14024	[0.13-0.15] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q13	ACOXL	rs150449635-C	0.024	1E-31		0.1446111	[0.12-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q13	ACOXL	rs150449635-C	0.024	3E-27		0.1339676	[0.11-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111752150	111752151	rs150449635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q13	ACOXL	rs150449635-C	0.024	5E-25		0.1279836	[0.1-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111752730	111752731	rs139153935	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs139153935-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1437	chr2	111752730	111752731	rs139153935	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q13	NR	rs139153935-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1437	chr2	111752730	111752731	rs139153935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q13		rs139153935-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1437	chr2	111753076	111753076	rs567318996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs567318996-CAAAAAAAAA	0.877916	1E-45		0.049035862	[0.042-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111754920	111754921	rs1157083	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2q13	ACOXL	rs1157083-?	NR	2E-13		0.03542	[0.026-0.045] unit increase novel	Illumina [6108953] (imputed)	N
1437	chr2	111762925	111762926	rs4848366	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q13	NR	rs4848366-?	NR	1E-20				Affymetrix [NR]	N
1437	chr2	111774637	111774638	rs4848367	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	2q13	ACOXL	rs4848367-?	NR	3E-15		0.03818	[0.029-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr2	111776287	111776288	rs11354102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	2q13		rs11354102-G	0.679372	9E-9		0.0231008	[0.015-0.031] unit decrease	Illumina [13477433] (imputed)	N
1437	chr2	111776287	111776288	rs11354102	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q13		rs11354102-A	0.121	1E-14				Affymetrix [10369434] (imputed)	N
1437	chr2	111778901	111778902	rs1371219	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q13		rs1371219-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1437	chr2	111778901	111778902	rs1371219	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q13		rs1371219-G	0.075	4E-22				Affymetrix [10369434] (imputed)	N
1437	chr2	111780424	111780429	rs200105536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs200105536-G	0.0124880000000001	6E-19		0.09457521	[0.074-0.115] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111780424	111780429	rs200105536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	ACOXL	rs200105536-G	0.012485	4E-11		0.07012536	[0.049-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111784319	111784320	rs11687123	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	2q13	NR	rs11687123-G	0.817126	1E-14		0.047946	[0.036-0.06] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
1437	chr2	111786636	111786637	rs56068469	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q13	ACOXL	rs56068469-G	0.1656	2E-21		0.04544254	[0.036-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111786636	111786637	rs56068469	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q13	ACOXL	rs56068469-G	0.1655	9E-24		0.04822269	[0.039-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111790803	111790804	rs3789088	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q13	ACOXL	rs3789088-C	0.1655	2E-11		0.03199461	[0.023-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111790803	111790804	rs3789088	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q13	ACOXL	rs3789088-C	0.1655	1E-18		0.04205895	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1437	chr2	111791652	111791653	rs3789087	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q13		rs3789087-T	0.173946	2E-12		0.040621	[0.029-0.052] unit decrease	Illumina [13471440] (imputed)	N
1437	chr2	111791652	111791653	rs3789087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs3789087-T	0.162857	5E-20		0.027407417	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1437	chr2	111791652	111791653	rs3789087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	ACOXL	rs3789087-T	0.162899	8E-34		0.03692001	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111791652	111791653	rs3789087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	ACOXL	rs3789087-T	0.162886	1E-38		0.053831078	[0.046-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1437	chr2	111791652	111791653	rs3789087	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	2q13	ACOXL	rs3789087-?	NR	1E-10		0.04824	[0.034-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
1437	chr2	111794387	111794388	rs3789085	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q13		rs3789085-A	0.571	5E-12				Affymetrix [10369434] (imputed)	N
1437	chr2	111797457	111797458	rs17483466	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q13	ACOXL	rs17483466-G	0.2	4E-17		1.37	[NR]	Illumina [549934]	N
1437	chr2	111797457	111797458	rs17483466	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q13	NR	rs17483466-?	0.80	5E-9		1.43	[1.27-1.61]	Affymetrix, Illumina [~ 1500000] (imputed)	N
1437	chr2	111797457	111797458	rs17483466	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	2q13	ACOXL, BCL2L11	rs17483466-G	0.20	2E-10		1.39	[1.25-1.53]	Illumina [345665]	N
1438	chr2	111807026	111807027	rs3789069	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	ACOXL	rs3789069-T	0.251332	5E-14		0.026850924	[0.02-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111807545	111807546	rs116008367	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q13	ACOXL	rs116008367-?	NR	3E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	2q13		rs2009581-A	0.27	1E-36		0.1176	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs2009581-A	0.274704	8E-18		0.022337168	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	ACOXL	rs2009581-A	0.274877	1E-17		0.02243966	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs2009581-A	0.274742	2E-30		0.0402313	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	ACOXL	rs2009581-A	0.274746	4E-34		0.03149937	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q13		rs2009581-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1438	chr2	111807676	111807677	rs2009581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs2009581-?	NR	4E-69				NR [~ 8900000] (imputed)	N
1438	chr2	111808557	111808558	rs12986962	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell Absolute Count	3,408 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q13		rs12986962-G	0.28257	4E-8		0.1568	[0.1-0.21] unit decrease	Illumina [18340221] (imputed)	N
1438	chr2	111808557	111808558	rs12986962	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD8dim T cell %T cell	3,440 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q13		rs12986962-G	0.2827	2E-8		0.1604	[0.1-0.22] unit decrease	Illumina [18357815] (imputed)	N
1438	chr2	111808557	111808558	rs12986962	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	2q13	ACOXL, BCL2L11	rs12986962-A	NR	9E-6		1.18294		Illumina [1233578] (imputed)	N
1438	chr2	111809329	111809330	rs2880119	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2q13	ACOXL	rs2880119-A	NR	2E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
1438	chr2	111809329	111809330	rs2880119	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2q13	ACOXL	rs2880119-A	0.8582	9E-9		0.0164051	[0.011-0.022] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
1438	chr2	111809329	111809330	rs2880119	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	2q13	ACOXL	rs2880119-C	NR	4E-7		1.0495905	[1.03-1.07]	Affymetrix, Illumina [8326000] (imputed)	N
1438	chr2	111811664	111811665	rs4848370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q13	ACOXL	rs4848370-T	0.273602	2E-13		0.018206012	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111811664	111811665	rs4848370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs4848370-C	0.726875	2E-13				Affymetrix, Illumina [22063850] (imputed)	N
1438	chr2	111811664	111811665	rs4848370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q13	NR	rs4848370-C	0.727159	2E-15		0.016757	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1438	chr2	111811664	111811665	rs4848370	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q13	ACOXL	rs4848370-T	0.2756	2E-27		0.04287648	[0.035-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111811664	111811665	rs4848370	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	ACOXL	rs4848370-T	0.2755	1E-27		0.04324023	[0.035-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111812616	111812617	rs10187034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q13	NR	rs10187034-C	NR	4E-9		0.0212	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr2	111812616	111812617	rs10187034	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q13	NR	rs10187034-C	NR	5E-16		0.0292	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr2	111815633	111815634	rs1837372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	ACOXL	rs1837372-G	0.259365	9E-17		0.021200214	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111818657	111818658	rs2165109	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL16	5,361 Icelandic ancestry individuals	NA	2q13		rs2165109-C	0.2586	4E-18		0.181687	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1438	chr2	111818657	111818658	rs2165109	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	2q13	NR	rs2165109-C	0.251869	4E-7		1.0926361	[1.05582163841262-1.13073417257807]	Illumina [11595112] (imputed)	N
1438	chr2	111818657	111818658	rs2165109	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	2q13	NR	rs2165109-C	0.251869	8E-7		1.0780069	[1.04637703624974-1.11059270801828]	Illumina [11595112] (imputed)	N
1438	chr2	111818657	111818658	rs2165109	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	2q13	NR	rs2165109-C	0.251869	4E-7		1.0954511	[1.05748739051043-1.1347778353567]	Illumina [11595112] (imputed)	N
1438	chr2	111818657	111818658	rs2165109	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	2q13	NR	rs2165109-C	0.251869	2E-8		1.086051	[1.05456961053472-1.11847227897416]	Illumina [11595112] (imputed)	N
1438	chr2	111822001	111822002	rs9646934	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q13	ACOXL	rs9646934-C	0.321581	3E-9		0.0121568	[0.0081-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
1438	chr2	111831792	111831793	rs58055674	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	2q13	ACOXL, BCL2L11	rs58055674-C	NR	2E-27		1.41	[1.32-1.5]	Affymetrix, Illumina [> 10000000] (imputed)	N
1438	chr2	111831792	111831793	rs58055674	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2q13	ACOXL	rs58055674-C	0.173	5E-20		1.44	[1.33-1.56]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1438	chr2	111832064	111832065	rs34931195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs34931195-?	NR	8E-34				NR [~ 8900000] (imputed)	N
1438	chr2	111836537	111836538	rs7578982	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q13	ACOXL	rs7578982-T	0.55	4E-7	(monocyte count)	0.054	[0.03-0.07] unit increase	Illumina [2178645] (imputed)	N
1438	chr2	111836663	111836664	rs7575878	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q13	ACOXL	rs7575878-T	0.441446	4E-10		0.0141065	[0.0098-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111843165	111843166	rs2880112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q13		rs2880112-C	NR	7E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1438	chr2	111849658	111849659	rs10207392	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	2q13	ACOXL	rs10207392-G	0.44	4E-11	(EA, MCV)	0.132	[0.083-0.181] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1438	chr2	111849912	111849913	rs10210490	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q13	NR	rs10210490-C	NR	4E-9		0.0344	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr2	111855257	111855258	rs6759108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q13	ACOXL	rs6759108-C	0.861202	1E-9		0.020231025	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111856292	111856293	rs12711846	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	2q13	BCL2L11	rs12711846-G	NR	3E-14				Illumina [10806625] (imputed)	N
1438	chr2	111856772	111856773	rs2018707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q13	ACOXL, AC096670.3	rs2018707-C	NR	4E-8		0.0202154	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
1438	chr2	111856772	111856773	rs2018707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q13	ACOXL, AC096670.3	rs2018707-C	NR	3E-8		0.0204709	[0.013-0.028] unit increase	Affymetrix [323858] (imputed)	N
1438	chr2	111859286	111859287	rs12052410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q13		rs12052410-A	NR	4E-8		0.0538	[0.035-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1438	chr2	111859286	111859287	rs12052410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	ACOXL, AC096670.3	rs12052410-A	0.117237	6E-13		0.024898238	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111861837	111861838	rs72946301	31719529	Lyons PA	2019-11-12	Nat Commun	Genome-wide association study of eosinophilic granulomatosis with polyangiitis reveals genomic loci stratified by ANCA status.	Eosinophilic granulomatosis with polyangiitis	534 European ancestry cases, 6,688 European ancestry controls	142 European and unknown ancestry cases, 121 European and unknown ancestry controls	2q13	BCL2L11	rs72946301-?	NR	9E-11		0.59	NR unit increase	Affymetrix [9246221] (imputed)	N
1438	chr2	111861992	111861993	rs2165108	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q13	NR	rs2165108-A	NR	3E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1438	chr2	111868603	111868604	rs73954922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2q13	NR	rs73954922-C	NR	3E-9		0.0289	[0.019-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1438	chr2	111868690	111868691	rs77004761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q13		rs77004761-A	NR	7E-10		0.0229	[0.016-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1438	chr2	111868690	111868691	rs77004761	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q13	NR	rs77004761-T	NR	7E-10		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
1438	chr2	111868690	111868691	rs77004761	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q13	NR	rs77004761-T	0.886	8E-9	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
1438	chr2	111871896	111871897	rs1439287	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2q13	ACOXL, BCL2L11	rs1439287-A	0.48	5E-15		1.37	[NR]	Illumina [450000] (imputed)	N
1438	chr2	111874060	111874078	rs150784178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	ACOXL	rs150784178-A	0.129291	5E-13		0.0333703	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111874060	111874078	rs150784178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q13	ACOXL	rs150784178-A	0.1311	4E-11		0.03559315	[0.025-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111874698	111874699	rs72836344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs72836344-T	0.0987805	2E-20				Affymetrix, Illumina [23114412] (imputed)	N
1438	chr2	111874698	111874699	rs72836344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q13	NR	rs72836344-G	NR	4E-6				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111874698	111874699	rs72836344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q13	NR	rs72836344-G	NR	2E-6				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111874698	111874699	rs72836344	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	2q13	NR	rs72836344-G	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111876538	111876539	rs72836345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836345-C	0.101672	1E-25		0.038627025	[0.031-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q13		rs72836346-G	0.921215	6E-12		0.0522998	[0.037-0.067] unit increase	NR [11722792] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q13		rs72836346-C	NR	2E-38		0.0436	[0.037-0.05] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.078319	8E-23		0.042890597	[0.034-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.078287	5E-10		0.027141497	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.078299	7E-11		0.029099869	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.078312	1E-76		0.078324735	[0.07-0.087] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.078321	7E-64		0.07117385	[0.063-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs72836346-C	0.0758443	9E-74				Affymetrix, Illumina [19872809] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q13	NR	rs72836346-C	0.078803	4E-76		0.069879	[0.062-0.077] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q13	NR	rs72836346-C	0.07856099999999999	6E-11		0.0154663	[0.011-0.02] unit increase	Affymetrix [16585854] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q13	NR	rs72836346-C	0.07856099999999999	1E-6		0.0130554	[0.0078-0.0183] unit increase	Affymetrix [16585866] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q13		rs72836346-?	NR	2E-68				NR [~ 8900000] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.0801	2E-12		0.04839354	[0.035-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111876612	111876613	rs72836346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q13	BCL2L11, AC096670.3	rs72836346-C	0.0801	1E-12		0.04866666	[0.035-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111877103	111877104	rs56952027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q13		rs56952027-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1438	chr2	111877173	111877174	rs73954925	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q13	BCL2L11	rs73954925-C	0.878	5E-11		1.169	[1.12-1.22]	Illumina [11270530] (imputed)	N
1438	chr2	111877174	111877175	rs73954926	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs73954926-?	NR	6E-17				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111878698	111878699	rs116907128	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2q13	BCL2L11	rs116907128-A	0.14	4E-8		0.12	[0.077-0.163] unit increase	Illumina [32241096] (imputed)	N
1438	chr2	111881809	111881810	rs72948328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2q13		rs72948328-C	0.939867	3E-8		0.0433601	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
1438	chr2	111881809	111881810	rs72948328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2q13		rs72948328-C	0.939867	4E-8		0.0427981	[0.028-0.058] unit increase	NR [11722792] (imputed)	N
1438	chr2	111881809	111881810	rs72948328	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q13		rs72948328-C	0.939867	2E-8		0.0440957	[0.029-0.059] unit increase	NR [11722792] (imputed)	N
1438	chr2	111881809	111881810	rs72948328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q13	BCL2L11	rs72948328-T	NR	4E-8		0.0335709	[0.022-0.046] unit decrease	Affymetrix [321788] (imputed)	N
1438	chr2	111883036	111883036	rs778640369	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs778640369-G	NR	1E-9		0.554	unit decrease	Illumina [NR]	N
1438	chr2	111886331	111886332	rs13429049	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q13	BCL2L11	rs13429049-C	0.68422	2E-13		0.0145539	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1438	chr2	111886331	111886332	rs13429049	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q13		rs13429049-?	NR	1E-14		0.0166252	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1438	chr2	111887753	111887754	rs113135335	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q13	NR	rs113135335-G	0.102862	1E-22		0.031099	[0.025-0.037] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1438	chr2	111887753	111887754	rs113135335	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q13	NR	rs113135335-G	0.1038	2E-13		0.0533	[0.039-0.068] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1438	chr2	111887753	111887754	rs113135335	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs113135335-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111888042	111888043	rs72836348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q13		rs72836348-G	0.897863	3E-9		0.0386792	[0.026-0.051] unit decrease	NR [11722792] (imputed)	N
1438	chr2	111888042	111888043	rs72836348	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q13		rs72836348-G	0.897863	1E-9		0.0392684	[0.027-0.052] unit decrease	NR [11722792] (imputed)	N
1438	chr2	111888042	111888043	rs72836348	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q13	NR	rs72836348-G	0.8917	3E-13		0.0562	[0.041-0.071] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1438	chr2	111891794	111891795	rs72836349	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or waist-to-hip ratio adjusted for BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,086 European ancestry individuals	NA	2q13	NR	rs72836349-T	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
1438	chr2	111893095	111893096	rs11691517	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q13	NR	rs11691517-T	NR	1E-11		1.054	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1438	chr2	111893095	111893096	rs11691517	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	2q13	BCL2L11	rs11691517-T	NR	7E-7		1.08	[NR]	Illumina [20370935] (imputed)	N
1438	chr2	111893095	111893096	rs11691517	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q13	BCL2L11	rs11691517-T	0.74	4E-12		1.07	[1.05-1.08]	Illumina [20370935] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q13		rs17041868-T	0.936393	2E-8		0.0437966	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q13		rs17041868-C	NR	2E-9		0.0223	[0.015-0.03] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2q13		rs17041868-?	NR	6E-6		1.06426	[1.04-1.09]	NR [688737]	N
1438	chr2	111894719	111894720	rs17041868	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q13	BCL2L11	rs17041868-T	0.935985	2E-10		0.0245869	[0.017-0.032] unit increase	Affymetrix [NR] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q13	NR	rs17041868-C	0.08	4E-17		0.03	[0.023-0.037] unit increase	Affymetrix [2446094] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q13	NR	rs17041868-C	0.08	5E-8				Affymetrix [2446094] (imputed)	N
1438	chr2	111894719	111894720	rs17041868	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q13	NR	rs17041868-T	0.9216	3E-8		0.0191	[0.012-0.026] unit decrease	NR [~ 27400000] (imputed)	N
1438	chr2	111896242	111896243	rs17041869	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2q13	BCL2L11	rs17041869-?		1E-12				Illumina [5041948] (imputed)	N
1438	chr2	111896242	111896243	rs17041869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	BCL2L11	rs17041869-G	0.133985	2E-11		0.022314936	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111896242	111896243	rs17041869	27432226	Kar SP	2016-07-17	Cancer Discov	Genome-Wide Meta-Analyses of Breast, Ovarian, and Prostate Cancer Association Studies Identify Multiple New Susceptibility Loci Shared by at Least Two Cancer Types.	Breast cancer, ovarian cancer or prostate cancer (pleiotropy)	62,533 European ancestry breast cancer female cases, 60,976 European ancestry controls, 15,437 European ancestry invasive epithelial ovarian cancer female cases, 30,845 European ancestry controls, 34,379 European ancestry prostate cancer male cases, 33,164 European ancestry controls	NA	2q13	BCL2L11	rs17041869-A	0.8804	2E-9		0.0571	[0.038-0.076] unit decrease	Illumina [NR]	N
1438	chr2	111897505	111897506	rs12613243	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q13	NR	rs12613243-T	0.936726	8E-16		0.0187667	[0.014-0.024] unit increase	Affymetrix [16585854] (imputed)	N
1438	chr2	111897505	111897506	rs12613243	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q13	NR	rs12613243-T	0.936726	9E-9		0.015372	[0.0097-0.0211] unit increase	Affymetrix [16585866] (imputed)	N
1438	chr2	111898983	111898984	rs113050728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q13	BCL2L11	rs113050728-C	NR	1E-8		0.0330752	[0.022-0.044] unit increase	Affymetrix [321114] (imputed)	N
1438	chr2	111899880	111899881	rs3761706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q13		rs3761706-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q13	BCL2L11	rs17484848-C	NR	1E-10		0.0306379	[0.021-0.04] unit decrease	Affymetrix [321169] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q13	BCL2L11	rs17484848-C	0.1031	3E-24		0.05988152	[0.048-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q13	BCL2L11	rs17484848-C	0.1031	6E-31		0.06834477	[0.057-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q13	BCL2L11	rs17484848-C	0.1031	1E-30		0.06773055	[0.056-0.079] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q13	BCL2L11	rs17484848-C	0.1031	9E-32		0.06930043	[0.058-0.081] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111900559	111900560	rs17484848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q13	BCL2L11	rs17484848-C	0.1031	1E-26		0.06296522	[0.051-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111900903	111900904	rs75543804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q13		rs75543804-T	NR	1E-14		0.0234	[0.018-0.029] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1438	chr2	111900903	111900904	rs75543804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q13		rs75543804-T	NR	5E-9		0.0207	[0.014-0.028] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1438	chr2	111900903	111900904	rs75543804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	BCL2L11	rs75543804-T	NR	2E-8		0.0443275	[0.029-0.06] unit increase	Affymetrix [319769] (imputed)	N
1438	chr2	111900903	111900904	rs75543804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	BCL2L11	rs75543804-T	NR	2E-8		0.0443745	[0.029-0.06] unit increase	Affymetrix [319769] (imputed)	N
1438	chr2	111903697	111903698	rs3761704	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q13	BCL2L11	rs3761704-G	0.133992	6E-13		0.02335647	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111904530	111904531	rs56366063	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	2q13	intergenic	rs56366063-C	NR	1E-8		1.14	[1.09-1.19]	Illumina [20370935] (imputed)	N
1438	chr2	111904530	111904531	rs56366063	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q13	NR	rs56366063-C	0.11	2E-8		1.08	[1.05-1.11]	Illumina [20370935] (imputed)	N
1438	chr2	111908261	111908262	rs9308731	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2q13	BCL2L11	rs9308731-A	0.537	1E-11		1.19	[1.13-1.26]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1438	chr2	111910082	111910083	rs3789067	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q13		rs3789067-C	0.937089	1E-8		0.0453551	[0.03-0.061] unit increase	NR [11722792] (imputed)	N
1438	chr2	111910082	111910083	rs3789067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q13		rs3789067-T	0.173807	6E-10		0.0220263	[0.015-0.029] unit decrease	Illumina [13479924] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q13		rs6734942-C	0.617	8E-27				Affymetrix [10369434] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q13	BCL2L11	rs6734942-T	0.381391	3E-28		0.026183872	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	BCL2L11	rs6734942-T	0.381408	4E-21		0.022389906	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q13		rs6734942-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q13	BCL2L11	rs6734942-T	0.3832	2E-21		0.03484736	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q13	BCL2L11	rs6734942-T	0.3832	2E-11		0.02469669	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111910693	111910694	rs6734942	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q13	BCL2L11	rs6734942-T	0.3833	6E-13		0.02647971	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111912728	111912729	rs6727356	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2q13		rs6727356-A	0.64	4E-8		0.07	unit decrease	Illumina [2093892] (imputed)	N
1438	chr2	111912728	111912729	rs6727356	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2q13		rs6727356-A	0.64	5E-6		0.07	unit decrease	Illumina [2398641] (imputed)	N
1438	chr2	111913055	111913056	rs13405741	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q13	BCL2L11	rs13405741-C	0.1	3E-8				NR [> 9500000] (imputed)	N
1438	chr2	111916867	111916868	rs72837816	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q13	NR	rs72837816-A	0.9023	1E-13		0.0248	[0.018-0.031] unit increase	NR [~ 27400000] (imputed)	N
1438	chr2	111918471	111918472	rs10189015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q13	BCL2L11	rs10189015-A	0.483242	6E-20		0.020481005	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111919345	111919346	rs686952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q13		rs686952-C	NR	1E-9		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1438	chr2	111919699	111919700	rs11686855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	BCL2L11	rs11686855-A	0.058367	9E-10		0.030534541	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111921151	111921152	rs3789059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q13		rs3789059-A	0.167961	2E-9		0.0274004	[0.018-0.036] unit increase	Illumina [13479091] (imputed)	N
1438	chr2	111921151	111921152	rs3789059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q13		rs3789059-A	0.16756	5E-8		0.0245106	[0.016-0.033] unit increase	Illumina [13478928] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	BCL2L11	rs68021656-GT	NR	1E-19		0.0426329	[0.033-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	BCL2L11	rs68021656-GT	NR	3E-19		0.0421614	[0.033-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q13	BCL2L11	rs68021656-GT	NR	2E-9		0.0292572	[0.02-0.039] unit increase	Affymetrix [321788] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q13	BCL2L11	rs68021656-GT	NR	4E-10		0.0294452	[0.02-0.039] unit increase	Affymetrix [321016] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q13	BCL2L11	rs68021656-GT	0.1025	2E-11		0.0398565	[0.028-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q13	BCL2L11	rs68021656-GT	0.1025	3E-10		0.03725625	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2q13	BCL2L11	rs68021656-GT	0.1025	1E-10		0.03790104	[0.026-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q13	BCL2L11	rs68021656-GT	0.1025	1E-13		0.04415591	[0.032-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111923086	111923086	rs68021656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q13	BCL2L11	rs68021656-GT	0.1025	7E-12		0.04078639	[0.029-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr2	111925737	111925744	rs71801447	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q13		rs71801447-CTTATGTT	NR	2E-7		0.94	[0.92-0.96]	Affymetrix, Illumina [NR] (imputed)	N
1438	chr2	111925737	111925744	rs71801447	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q13	BCL2L11	rs71801447-C	0.06	4E-8	(EA)	1.09	[1.05-1.13] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q13		rs6708784-G	NR	3E-15		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q13		rs6708784-G	NR	5E-11		0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q13	BCL2L11	rs6708784-G	0.494827	2E-24		0.022878999	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q13	BCL2L11	rs6708784-G	0.494791	2E-17		0.01990671	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q13	BCL2L11	rs6708784-G	0.494778	1E-25		0.02330509	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	2q13		rs6708784-G	NR	2E-7		1.2898233	NR	Affymetrix [7846216] (imputed)	N
1438	chr2	111927378	111927379	rs6708784	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q13	BCL2L11	rs6708784-A	0.5055	2E-10		0.0126615	[0.0088-0.0166] unit increase	Affymetrix [NR] (imputed)	N
1438	chr2	111929880	111929881	rs61484463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	2q13		rs61484463-C	0.173804	2E-8		0.0341671	[0.022-0.046] unit increase	Illumina [13467171] (imputed)	N
1438	chr2	111930795	111930796	rs10211562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q13		rs10211562-T	NR	1E-10		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1438	chr2	111931349	111931350	rs2165107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q13		rs2165107-G	0.462382	8E-13		0.015979737	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1438	chr2	111932121	111932122	rs6726007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q13		rs6726007-T	NR	1E-11		0.0138	[0.0099-0.0177] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1438	chr2	111932615	111932616	rs7596789	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	2q13		rs7596789-?	NR	5E-8		1.32622	[1.22-1.43]	NR [663083]	N
1438	chr2	111932996	111932997	rs6760053	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q13	NR	rs6760053-G	NR	4E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
1438	chr2	111932996	111932997	rs6760053	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q13	NR	rs6760053-C	0.53	5E-9		0.011	[0.0073-0.0147] unit increase	NR [NR]	N
1438	chr2	111933000	111933001	rs72837826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q13		rs72837826-T	NR	2E-11		0.0258	[0.018-0.033] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	2q13		rs72837826-T	NR	2E-9		0.0924	[0.062-0.122] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q13		rs72837826-T	NR	2E-15		0.1042	[0.078-0.13] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q13		rs72837826-G	0.897	1E-22				Affymetrix [10369434] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q13		rs72837826-T	0.102428	2E-17		0.031007031	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q13		rs72837826-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1438	chr2	111933000	111933001	rs72837826	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	2q13	BCL2L11	rs72837826-T	0.12	2E-11		1.29	[1.19-1.39]	Affymetrix, Illumina [7891602] (imputed)	N
1438	chr2	111934106	111934107	rs590097	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q13	NR	rs590097-G	0.646578	4E-48		0.0192827	[0.017-0.022] unit increase	Affymetrix [16578495] (imputed)	N
1438	chr2	111934106	111934107	rs590097	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q13	NR	rs590097-G	0.646198	2E-100		0.0606189	[0.055-0.066] unit increase	Affymetrix [16580851] (imputed)	N
1438	chr2	111934106	111934107	rs590097	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2q13	NR	rs590097-G	0.646876	1E-19		0.018975	[0.015-0.023] unit increase	Affymetrix [16583148] (imputed)	N
1438	chr2	111934106	111934107	rs590097	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q13	NR	rs590097-G	0.646468	5E-38		0.0339639	[0.029-0.039] unit increase	Affymetrix [16585745] (imputed)	N
1438	chr2	111934976	111934977	rs10169613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q13		rs10169613-T	NR	1E-9		0.0386	[0.026-0.051] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1438	chr2	111934976	111934977	rs10169613	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q13	BCL2L11	rs10169613-T	0.472133958676468	4E-8		0.0429	[0.028-0.058] unit decrease	NR [5035015] (imputed)	N
1438	chr2	111935081	111935081	rs545776970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q13		rs545776970-CT	0.469966	5E-16		0.018313235	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111935231	111935232	rs7562480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q13		rs7562480-T	0.472334	2E-9		0.013536844	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr2	111935460	111935461	rs7565445	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q13	BCL2L11	rs7565445-C	NR	3E-6		1.053	NR	Affymetrix, Illumina [8278136] (imputed)	N
1439	chr2	111937130	111937130	rs386390894	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13		rs386390894-GTT	0.504116	3E-21		0.021963952	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr2	111940584	111940585	rs76649092	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q13		rs76649092-C	0.902	1E-8				Affymetrix [10369434] (imputed)	N
1439	chr2	111941994	111941995	rs616582	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	intergenic	rs616582-C	0.5954	2E-13		0.0265234	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr2	111943199	111943200	rs604126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs604126-?	NR	6E-25				NR [~ 8900000] (imputed)	N
1439	chr2	111946455	111946456	rs10199020	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q13	MIR4435-2HG	rs10199020-A	0.494	3E-14		0.013	[0.0097-0.0163] unit increase	Affymetrix [18391927] (imputed)	N
1439	chr2	111949326	111949327	rs6738028	21533175	Zhai G	2011-04-14	PLoS Genet	Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.	Dehydroepiandrosterone sulphate levels	14,846 European ancestry individuals	NA	2q13	BCL2L11	rs6738028-G	0.40	2E-8		0.04	[0.02-0.06] umol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1439	chr2	111950540	111950541	rs11123406	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q13	BCL2L11	rs11123406-T	0.36	9E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1439	chr2	111950540	111950541	rs11123406	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q13	BCL2L11	rs11123406-C	0.6382	1E-6	(EA)	0.0494	[0.029-0.069] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1439	chr2	111966660	111966661	rs60693488	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q13	MIR4435-1HG	rs60693488-A	0.28423	6E-12		0.017237738	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr2	111979814	111979815	rs6542368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs6542368-A	NR	7E-9		0.0162983	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1439	chr2	111979814	111979815	rs6542368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs6542368-A	NR	8E-9		0.0162089	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1439	chr2	111979814	111979815	rs6542368	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q13	NR	rs6542368-?	NR	1E-7		0.93	[0.87-1]	Illumina [539000] (imputed)	N
1439	chr2	111979814	111979815	rs6542368	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs6542368-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1439	chr2	111989371	111989372	rs6720394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2q13	NR	rs6720394-G	NR	4E-10		0.0249	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1439	chr2	111989371	111989372	rs6720394	21151127	Melum E	2010-12-12	Nat Genet	Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci.	Primary sclerosing cholangitis	715 European ancestry cases, 2,962 European ancestry controls	1,025 European ancestry cases, 2,174 European ancestry controls	2q13	BCL2L11	rs6720394-?	0.11	4E-8		1.29	[1.10-1.51]	Affymetrix [2466182] (imputed)	N
1439	chr2	111993363	111993364	rs17041941	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	2q13	MIR4435, 2HG	rs17041941-?		9E-6				Illumina [1048575]	N
1439	chr2	112003866	112003867	rs2271404	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	2q13	LOC100505634	rs2271404-G	0.238	3E-7		1.17	[1.10-1.25]	Illumina [606164]	N
1439	chr2	112007942	112007943	rs12469743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs12469743-G	NR	4E-13		0.0239594	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1439	chr2	112007942	112007943	rs12469743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs12469743-G	NR	3E-13		0.0240417	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1439	chr2	112007942	112007943	rs12469743	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs12469743-G	NR	7E-9		0.0193486	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1439	chr2	112010485	112010486	rs4308124	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2q13	BCL2L11, MIR5535, 2HG	rs4308124-C	0.4065	4E-9		1.154	[1.10-1.21]	Illumina [8966411] (imputed)	N
1439	chr2	112012671	112012672	rs57874285	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q13	LOC541471	rs57874285-A	0.3989	2E-8		0.156	[0.1-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
1439	chr2	112019156	112019157	rs148142634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs148142634-C	NR	1E-8		0.0167024	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1439	chr2	112019156	112019157	rs148142634	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs148142634-C	NR	1E-8		0.0166943	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1439	chr2	112047055	112047056	rs1519522	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q13		rs1519522-?	NR	1E-11		0.0156174	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1439	chr2	112047858	112047859	rs3891955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q13		rs3891955-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1439	chr2	112049535	112049536	rs932203	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q13	MIR4435-2HG	rs932203-G	0.51945	3E-11		0.012173	[0.0086-0.0158] unit decrease	NR [13737936] (imputed)	N
1440	chr2	112071458	112071459	rs62162863	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q13	NR	rs62162863-G	0.577105	7E-11		0.00957424	[0.0067-0.0124] unit increase	Affymetrix [16578495] (imputed)	N
1440	chr2	112071458	112071459	rs62162863	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q13	NR	rs62162863-G	0.577471	1E-13		0.0230675	[0.017-0.029] unit increase	Affymetrix [16580851] (imputed)	N
1440	chr2	112100659	112100660	rs2878150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q13	ACOXL	rs2878150-?	NR	7E-6	(TAG 50:4)	8.678012	[4.9-12.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1440	chr2	112100659	112100660	rs2878150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q13	ACOXL	rs2878150-?	NR	4E-6	(DAG 36:2)	9.05954	[5.21-12.91] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1440	chr2	112117303	112117304	rs113993396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2q13	MIR4435-1HG	rs113993396-G	0.0897	1E-12		0.05301958	[0.038-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112117303	112117304	rs113993396	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q13	MIR4435-1HG	rs113993396-G	0.0897	4E-11		0.04967556	[0.035-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112124248	112124249	rs187404828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs187404828-A	0.0844291	9E-12				Affymetrix, Illumina [21126107] (imputed)	N
1440	chr2	112129092	112129093	rs2334232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	MIR4435-1HG	rs2334232-A	0.1839	7E-48		0.07892772	[0.068-0.09] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112131144	112131145	rs143800403	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q13	MIR4435-1HG	rs143800403-T	0.175	1E-53		0.08465487	[0.074-0.095] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112135950	112135951	rs550931537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs550931537-G	NR	6E-9		0.0293971	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1440	chr2	112135950	112135951	rs550931537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	MIR4435-1HG	rs550931537-G	NR	3E-9		0.0298487	[0.02-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1440	chr2	112137053	112137054	rs112917684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q13	MIR4435-1HG	rs112917684-A	0.188626	2E-10		0.020405408	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112137624	112137625	rs377560922	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q13	NR	rs377560922-C	0.288745	5E-12		0.017627	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1440	chr2	112138163	112138164	rs78124867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs78124867-T	0.185659	1E-9		0.020486118	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112138163	112138164	rs78124867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs78124867-T	0.185662	9E-12		0.02308701	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112138163	112138164	rs78124867	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q13	MIR4435-1HG	rs78124867-T	0.1916	1E-36		0.06639744	[0.056-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112141780	112141781	rs62163546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q13	AC068491.3	rs62163546-G	0.287973	3E-14		0.020236136	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112142071	112142072	rs372515880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q13		rs372515880-A	NR	5E-104		0.0593	[0.054-0.065] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1440	chr2	112143412	112143413	rs2139376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs2139376-?	NR	1E-55				NR [~ 8900000] (imputed)	N
1440	chr2	112143412	112143413	rs2139376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs2139376-?	NR	6E-86				NR [~ 8900000] (imputed)	N
1440	chr2	112145487	112145488	rs142118720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	MIR4435-1HG	rs142118720-T	0.183459	9E-60		0.051874578	[0.046-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112145487	112145488	rs142118720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs142118720-T	0.183451	3E-42		0.043902982	[0.038-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112145487	112145488	rs142118720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs142118720-T	0.183426	2E-50		0.04851034	[0.042-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112145487	112145488	rs142118720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs142118720-T	0.183486	9E-25		0.0788353	[0.073-0.085] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112145487	112145488	rs142118720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	MIR4435-1HG	rs142118720-T	0.183489	2E-23		0.04390601	[0.035-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112166927	112166928	rs568141201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs568141201-C	0.145961	4E-10		0.0934442	[0.087-0.1] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112166927	112166928	rs568141201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	MIR4435-1HG	rs568141201-C	0.145963	3E-9		0.031610638	[0.021-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q13		rs62160676-C	NR	3E-77		0.0415	[0.037-0.046] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q13		rs62160676-C	NR	4E-33		0.0303	[0.025-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q13		rs62160676-C	NR	2E-110		0.0579	[0.053-0.063] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q13		rs62160676-T	0.703	4E-14				Affymetrix [10369434] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q13		rs62160676-T	0.703	8E-18				Affymetrix [10369434] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs62160676-C	0.288563	1E-10				Affymetrix, Illumina [19905671] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q13	NR	rs62160676-C	0.296123	4E-13		0.016626	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs62160676-?	NR	9E-119				NR [~ 8900000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs62160676-?	NR	1E-170				NR [~ 8900000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2q13	MIR4435-1HG	rs62160676-C	0.2975	4E-10		0.02409079	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q13	MIR4435-1HG	rs62160676-C	0.2974	4E-50		0.0582557	[0.051-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q13	MIR4435-1HG	rs62160676-C	0.2974	3E-65		0.066302	[0.059-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	MIR4435-1HG	rs62160676-C	0.2974	2E-67		0.06756394	[0.06-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112167930	112167931	rs62160676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q13	MIR4435-1HG	rs62160676-C	0.2974	1E-9		0.0235222	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.24029	1E-9		0.01729278	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.240329	3E-9		0.080627	[0.075-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.240317	2E-9		0.032049265	[0.022-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.240259	2E-10		0.018015089	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.240104	1E-14		0.022458347	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112184713	112184714	rs12185734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs12185734-C	0.240183	2E-9		0.017394107	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112184805	112184806	rs4533474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs4533474-C	0.735084	5E-207				Affymetrix, Illumina [20825802] (imputed)	N
1440	chr2	112184805	112184806	rs4533474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q13	NR	rs4533474-C	0.739707	1E-211		0.076255	[0.071-0.081] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1440	chr2	112184805	112184806	rs4533474	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	2q13	MIR4435-1HG	rs4533474-C	0.7198	7E-13		0.03141284	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112184805	112184806	rs4533474	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	2q13	MIR4435-1HG	rs4533474-C	0.72	3E-12		0.03089169	[0.022-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs4377346-C	0.236595	1E-146				Affymetrix, Illumina [24332387] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q13	NR	rs4377346-C	0.240234	2E-150		0.063705	[0.059-0.068] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs4377346-C	0.236597	2E-228				Affymetrix, Illumina [24246363] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q13	NR	rs4377346-C	0.240242	9E-232		0.077899	[0.073-0.083] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q13	MIR4435-1HG	rs4377346-C	0.2528	4E-19		0.04127506	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112185843	112185844	rs4377346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q13	MIR4435-1HG	rs4377346-C	0.253	4E-15		0.03619333	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q13		rs1045267-A	0.266	3E-122		0.32	[0.29-0.35] % increase	Affymetrix [NR] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2q13		rs1045267-G	NR	3E-13		0.29	[0.21-0.37] unit decrease	Illumina [97506867]	N
1440	chr2	112187040	112187041	rs1045267	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	2q13		rs1045267-G	NR	1E-10		0.1	[0.061-0.139] unit decrease	Illumina [94681438]	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733497	2E-69		0.04877806	[0.043-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733239	9E-44		0.03888966	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733233	4E-33		0.03335972	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733498	9E-84		0.054312512	[0.049-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733603	1E-64		0.04787158	[0.042-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733485	3E-13		0.0794607	[0.074-0.084] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1045267-G	0.733476	1E-10		0.03338813	[0.023-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs1045267-G	0.718095	1E-37				Affymetrix, Illumina [24588908] (imputed)	N
1440	chr2	112187040	112187041	rs1045267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q13	NR	rs1045267-G	0.725604	9E-41		0.032384	[0.028-0.037] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1441	chr2	112213769	112213770	rs60756694	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2q13		rs60756694-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1441	chr2	112213769	112213770	rs60756694	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q13		rs60756694-A	0.671	1E-13				Affymetrix [10369434] (imputed)	N
1441	chr2	112219428	112219429	rs138672815	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q13		rs138672815-C	0.973	1E-20				Affymetrix [10369434] (imputed)	N
1441	chr2	112220358	112220359	rs1448187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q13		rs1448187-C	NR	6E-41		0.0403	[0.034-0.046] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1441	chr2	112220358	112220359	rs1448187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q13	MIR4435-1HG	rs1448187-C	0.699507	3E-9		0.015604365	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112220358	112220359	rs1448187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q13		rs1448187-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1441	chr2	112220358	112220359	rs1448187	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	2q13	BCL2L11	rs1448187-T	0.2993	1E-12		0.1	NR SD units increase	Illumina [21568490] (imputed)	N
1441	chr2	112228827	112228828	rs4849748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q13		rs4849748-C	NR	8E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1441	chr2	112228827	112228828	rs4849748	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs4849748-T	NR	4E-24		0.219	unit decrease	Illumina [NR]	N
1441	chr2	112231542	112231543	rs11695997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q13	MIR4435-1HG	rs11695997-A	0.0798	5E-10		0.04487325	[0.031-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112231542	112231543	rs11695997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q13	MIR4435-1HG	rs11695997-A	0.0798	2E-21		0.06834993	[0.054-0.082] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112238068	112238069	rs191065629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q13	MIR4435-1HG	rs191065629-A	0.0263	4E-12		0.054794725	[0.039-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112238123	112238124	rs55784630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q13	MIR4435-1HG	rs55784630-G	0.6376	1E-9		0.015828729	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112238446	112238447	rs4497886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q13		rs4497886-A	NR	4E-46		0.0689	[0.059-0.078] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1441	chr2	112239081	112239082	rs55706446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs55706446-T	0.0750150000000001	5E-22		0.043304265	[0.035-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112239081	112239082	rs55706446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q13	MIR4435-1HG	rs55706446-T	0.074998	2E-47		0.06492218	[0.056-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112239081	112239082	rs55706446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q13	MIR4435-1HG	rs55706446-T	0.075013	2E-71		0.08017162	[0.071-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112239081	112239082	rs55706446	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q13	MIR4435-1HG	rs55706446-T	0.0727	2E-30		0.0844595	[0.07-0.099] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112245585	112245586	rs3747647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q13	NR	rs3747647-C	0.21783699999999995	4E-19		0.00880009	[0.0068-0.0108] unit increase	Affymetrix [16582909] (imputed)	N
1441	chr2	112245585	112245586	rs3747647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q13	NR	rs3747647-C	0.21802699999999997	4E-10		0.00872515	[0.0059-0.0115] unit increase	Affymetrix [16582621] (imputed)	N
1441	chr2	112245585	112245586	rs3747647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q13	NR	rs3747647-C	0.21783699999999995	7E-11		0.00732412	[0.0051-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
1441	chr2	112245585	112245586	rs3747647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q13	NR	rs3747647-C	0.21802699999999997	8E-9		0.00826646	[0.0053-0.0112] unit increase	Affymetrix [16582614] (imputed)	N
1441	chr2	112247746	112247747	rs140294987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q13		rs140294987-A	NR	3E-11		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1441	chr2	112247746	112247747	rs140294987	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q13	MIR4435-1HG	rs140294987-A	0.128852	3E-11		0.022612322	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112247746	112247747	rs140294987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs140294987-A	0.127041	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
1441	chr2	112247746	112247747	rs140294987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q13	NR	rs140294987-A	0.127036	1E-18				Affymetrix, Illumina [24558453] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128192	7E-61		0.055700816	[0.049-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128192	1E-52		0.052373763	[0.046-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128178	8E-49		0.05069732	[0.044-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128228	2E-76		0.0726652	[0.067-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128235	9E-73		0.06123362	[0.055-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128063	6E-13		0.024821064	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q13	AC017002.2, MIR4435-1HG, AC017002.1	rs138308793-A	0.128145	3E-10		0.021535957	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q13	NR	rs138308793-A	0.12763	2E-15		0.023766	[0.018-0.03] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q13	NR	rs138308793-A	0.127622	5E-22		0.028899	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q13	LOC105373557	rs138308793-A	0.12504899999999997	4E-8		1.0523026	[1.03340354315471-1.07154719595286]	NR [9572556] (imputed)	N
1441	chr2	112250757	112250758	rs138308793	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q13	MIR4435-1HG, AC017002.1, AC017002.2	rs138308793-A	0.1311	3E-9		0.03188021	[0.021-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112251120	112251121	rs754243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q13	MIR4435-1HG, AC017002.1, AC017002.2	rs754243-A	NR	1E-8		0.0205191	[0.013-0.028] unit increase	Affymetrix [321788] (imputed)	N
1441	chr2	112251120	112251121	rs754243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q13	MIR4435-1HG, AC017002.1, AC017002.2	rs754243-A	NR	8E-11		0.025661	[0.018-0.033] unit increase	Affymetrix [323858] (imputed)	N
1441	chr2	112251120	112251121	rs754243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q13	MIR4435-1HG, AC017002.1, AC017002.2	rs754243-A	NR	7E-11		0.0225801	[0.016-0.029] unit increase	Affymetrix [321016] (imputed)	N
1441	chr2	112251120	112251121	rs754243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q13	MIR4435-1HG, AC017002.1, AC017002.2	rs754243-A	NR	1E-9		0.0229641	[0.016-0.03] unit increase	Affymetrix [323123] (imputed)	N
1441	chr2	112252584	112252585	rs141514755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q13	MIR4435-1HG	rs141514755-C	0.123891	9E-15		0.026396181	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112253850	112253851	rs1345203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs1345203-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
1441	chr2	112253850	112253851	rs1345203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q13	NR	rs1345203-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1441	chr2	112253850	112253851	rs1345203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q13		rs1345203-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1441	chr2	112253850	112253851	rs1345203	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q13	NR	rs1345203-?	NR	2E-8		0.15115	[0.098-0.204] unit increase	Affymetrix [7794483] (imputed)	N
1441	chr2	112253850	112253851	rs1345203	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q13	NA	rs1345203-T	0.7829	3E-15		0.0187	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1441	chr2	112256319	112256320	rs201570119	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q13	AC017002.3	rs201570119-T	0.7902	5E-17		0.0194	[0.015-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1441	chr2	112256610	112256611	rs200104212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	AC017002.1	rs200104212-C	NR	2E-21		0.0331024	[0.026-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1441	chr2	112256610	112256611	rs200104212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	AC017002.1	rs200104212-C	NR	6E-21		0.0327054	[0.026-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1441	chr2	112256610	112256611	rs200104212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q13	AC017002.1	rs200104212-C	NR	9E-10		0.0214877	[0.015-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1441	chr2	112256610	112256611	rs200104212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q13	AC017002.1	rs200104212-C	NR	1E-12		0.0250465	[0.018-0.032] unit decrease	Affymetrix [321169] (imputed)	N
1441	chr2	112258163	112258164	rs1345202	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q13	AC017002.1	rs1345202-C	0.2446	3E-10		0.016509287	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112261029	112261030	rs59043281	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q13	NR	rs59043281-A	0.207	4E-28		0.027	[0.022-0.032] unit decrease	NR [~ 27400000] (imputed)	N
1441	chr2	112261029	112261030	rs59043281	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q13	NR	rs59043281-A	0.207	6E-15		0.019	[0.014-0.024] unit decrease	NR [~ 27400000] (imputed)	N
1441	chr2	112263141	112263142	rs12623041	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q13	NR	rs12623041-C	0.6802	1E-10		1.0421009	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1441	chr2	112263141	112263142	rs12623041	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q13	NR	rs12623041-C	0.6802	1E-9		1.0364842	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q13		rs1448208-T	NR	1E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q13	AC017002.1	rs1448208-T	NR	5E-17		0.0252993	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q13	AC017002.1	rs1448208-T	NR	1E-16		0.0249854	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q13	AC017002.1	rs1448208-T	NR	4E-10		0.0195884	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q13	AC017002.1	rs1448208-T	NR	9E-11		0.0195311	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q13	AC017002.1	rs1448208-T	NR	2E-8		0.0170402	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1441	chr2	112263473	112263474	rs1448208	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q13	NR	rs1448208-T	0.3358	5E-9		0.001389	[0.00092-0.00186] unit decrease	Affymetrix [NR] (imputed)	N
1441	chr2	112264988	112264989	rs59521405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q13	AC017002.1	rs59521405-C	0.247389	2E-10		0.016936589	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112268284	112268285	rs1448203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q13	AC017002.1	rs1448203-C	0.8706	6E-33		0.06338378	[0.053-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112268439	112268440	rs62162286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q13		rs62162286-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1441	chr2	112268731	112268732	rs143326447	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q13	BCL2L11, ANAPC1	rs143326447-?	NR	2E-9		1.071	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
1441	chr2	112268731	112268732	rs143326447	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q13	BCL2L11, ANAPC1	rs143326447-C	NR	4E-7		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1441	chr2	112268731	112268732	rs143326447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs143326447-?	NR	6E-83				NR [~ 8900000] (imputed)	N
1441	chr2	112268731	112268732	rs143326447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs143326447-?	NR	2E-95				NR [~ 8900000] (imputed)	N
1441	chr2	112269126	112269127	rs13403656	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q13	BCL2L11, ANAPC1	rs13403656-A	0.16	2E-8		1.045	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1441	chr2	112278538	112278539	rs61033544	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q13	NR	rs61033544-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1441	chr2	112279333	112279334	rs112744032	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q13	intergenic	rs112744032-A	0.8656	9E-30		0.05887251	[0.049-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112279334	112279335	rs62162297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q13	intergenic	rs62162297-T	0.8656	2E-28		0.05771682	[0.047-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1441	chr2	112300672	112300673	rs1666723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2q13		rs1666723-T	NR	5E-9		0.3833	[0.25-0.51] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
1441	chr2	112300672	112300673	rs1666723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2q13		rs1666723-T	0.051360933	4E-9		0.40042546	[0.27-0.53] unit decrease	Illumina [13428180] (imputed)	N
1441	chr2	112312516	112312517	rs147428054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q13	RP11-68E19.1	rs147428054-C	0.09434	3E-11		0.025947586	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1441	chr2	112323642	112323643	rs11679897	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2q13	SAMD9L	rs11679897-A	0.109	3E-7		1.679	[1.376 - 2.048]	Illumina [5398302] (imputed)	N
1442	chr2	112363513	112363514	rs183295481	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q13	AC017002.4	rs183295481-G	0.120394	1E-17		0.03058713	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1442	chr2	112365694	112365695	rs79102158	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q13	NR	rs79102158-?	NR	9E-6		0.0426	[0.024-0.061] unit increase	Illumina [at least 560000] (imputed)	N
1442	chr2	112375424	112375425	rs10168169	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q13	NR	rs10168169-T	0.812209	5E-20		0.0333376	[0.026-0.04] unit increase	Affymetrix [16580851] (imputed)	N
1442	chr2	112375914	112375915	rs2166862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q13	NR	rs2166862-C	0.345012	1E-13		0.0063881	[0.0047-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
1442	chr2	112375914	112375915	rs2166862	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q13	NR	rs2166862-C	0.345012	1E-7		0.00513248	[0.0032-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1442	chr2	112375962	112375963	rs1448190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q13		rs1448190-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1442	chr2	112375962	112375963	rs1448190	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q13	ANAPC1	rs1448190-A	0.381	8E-6	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1442	chr2	112378193	112378194	rs79784973	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q13	NR	rs79784973-G	NR	1E-6	(GEE model)	0.97698	[0.58-1.37] unit decrease	NR [NR] (imputed)	N
1442	chr2	112380558	112380559	rs11683361	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q13	NR	rs11683361-G	0.8065370000000001	2E-12		0.0222847	[0.016-0.029] unit increase	Affymetrix [16585745] (imputed)	N
1442	chr2	112380558	112380559	rs11683361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs11683361-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1442	chr2	112380558	112380559	rs11683361	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q13		rs11683361-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1442	chr2	112381694	112381695	rs2197771	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q13	NR	rs2197771-G	0.368568	3E-9		0.00680426	[0.0045-0.0091] unit increase	Affymetrix [16582621] (imputed)	N
1442	chr2	112381694	112381695	rs2197771	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q13	NR	rs2197771-G	0.368568	2E-6		0.00601618	[0.0035-0.0085] unit increase	Affymetrix [16582614] (imputed)	N
1442	chr2	112382578	112382578	rs111592775	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q13	intergenic	rs111592775-TCACTTAAGCCCAG	0.7676	7E-11		0.02782232	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q13		rs4848100-T	0.768474	4E-22		0.025313709	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q13		rs4848100-T	0.768466	7E-25		0.026925953	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q13		rs4848100-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q13	intergenic	rs4848100-T	0.768	1E-11		0.02903506	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q13	intergenic	rs4848100-T	0.768	3E-12		0.02968727	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1442	chr2	112388531	112388532	rs4848100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q13	intergenic	rs4848100-T	0.768	2E-13		0.03142982	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1442	chr2	112388537	112388538	rs4848612	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q13	BCL2L11, ANAPC1	rs4848612-A	0.76	2E-10		1.038	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1442	chr2	112395533	112395534	rs7593992	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q13		rs7593992-T	0.231	4E-9				Affymetrix [10369434] (imputed)	N
1442	chr2	112408423	112408424	rs72823412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q13	NR	rs72823412-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1442	chr2	112408423	112408424	rs72823412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q13	NR	rs72823412-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1442	chr2	112424374	112424375	rs68012394	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs68012394-A	0.562391	6E-16		0.0699508	[0.052-0.088] decrease	Affymetrix [11014269] (imputed)	N
1442	chr2	112433222	112433223	rs72823422	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72823422-T	0.922207	1E-8		0.0910363	[0.058-0.124] increase	Affymetrix [11014269] (imputed)	N
1442	chr2	112451602	112451603	rs115845266	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs115845266-T	0.977837	1E-9		0.188784	[0.13-0.25] decrease	Affymetrix [11014269] (imputed)	N
1443	chr2	112470154	112470155	rs11122895	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	2q13	ANAPC1	rs11122895-T	0.39	2E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1443	chr2	112484524	112484525	rs78658973	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	ANAPC1	rs78658973-T	NR	2E-314		0.767844	unit decrease	Illumina [NR]	N
1443	chr2	112484524	112484525	rs78658973	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q13	ANAPC1	rs78658973-?	NR	2E-31		0.1925	[0.16-0.22] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1443	chr2	112490127	112490128	rs201205018	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs201205018-A		2E-28		0.235	[NR] unit increase	Illumina [NR]	N
1443	chr2	112490327	112490328	rs72823439	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q13		rs72823439-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1443	chr2	112496957	112496958	rs200632716	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs200632716-A		1E-13		0.159	[NR] unit decrease	Illumina [NR]	N
1443	chr2	112498113	112498114	rs74267315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q13	AC093166.3	rs74267315-G	0.231539	3E-10		0.016930781	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1443	chr2	112500034	112500035	rs17040773	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q13	ANAPC1	rs17040773-A	0.76	2E-9		0.04	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1443	chr2	112526865	112526866	rs1044864	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	2q13	ANAPC1	rs1044864-G	0.767	6E-206		0.241	[0.23-0.26] unit decrease	Affymetrix [12000000] (imputed)	N
1443	chr2	112526865	112526866	rs1044864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q13		rs1044864-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1443	chr2	112526865	112526866	rs1044864	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q13	ANAPC1	rs1044864-G	0.766	2E-33		0.21	[0.18-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1443	chr2	112532986	112532987	rs76210128	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	2q13	ANAPC1	rs76210128-C	0.767	3E-148		0.219	[0.2-0.24] unit decrease	Affymetrix [12000000] (imputed)	N
1443	chr2	112533679	112533680	rs55913672	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q13		rs55913672-A	0.88318	3E-12		0.0998213	[0.072-0.128] increase	Affymetrix [11014269] (imputed)	N
1443	chr2	112539383	112539384	rs77797441	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	2q13	ANAPC1	rs77797441-T	0.223	8E-12		0.21	[0.15-0.27] mm Hg increase	Affymetrix [NR] (imputed)	N
1443	chr2	112549788	112549789	rs375968322	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q13		rs375968322-?	NR	1E-23		0.0268586	[0.021-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
1443	chr2	112550324	112550325	rs2030500	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2q13	NR	rs2030500-C		2E-37		0.22	[0.18-0.26] unit increase	NR [NR]	N
1443	chr2	112566516	112566517	rs201128688	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q13	ANAPC1	rs201128688-T		2E-9		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1443	chr2	112580970	112580971	rs66739581	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q13		rs66739581-C	NR	2E-9		0.0131	[0.0088-0.0174] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1443	chr2	112580970	112580971	rs66739581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q13		rs66739581-?	NR	6E-20				NR [~ 8900000] (imputed)	N
1444	chr2	112591794	112591795	rs75031626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q13		rs75031626-?	NR	8E-24				NR [~ 8900000] (imputed)	N
1444	chr2	112625009	112625010	rs7597495	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 25)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q13		rs7597495-G	0.348819414	6E-10				Illumina [7417619] (imputed)	N
1444	chr2	112630628	112630629	rs113773470	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q13	ANAPC1	rs113773470-A	0.833962	1E-24		0.0254119	[0.021-0.03] unit decrease	NR [13737936] (imputed)	N
1444	chr2	112630996	112630997	rs111345639	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2q13	NR	rs111345639-G		2E-8		0.35	[0.23-0.47] unit increase	NR [NR]	N
1444	chr2	112651404	112651405	rs4535048	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q13	NR	rs4535048-C	0.897171	3E-11		0.0229098	[0.016-0.03] unit increase	NR [NR]	N
1444	chr2	112655241	112655242	rs6736093	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q13	MERTK	rs6736093-A	0.717	3E-6		0.033	[0.019-0.047] unit decrease	Affymetrix [7947838] (imputed)	N
1444	chr2	112656651	112656652	rs7604403	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q13	MERTK	rs7604403-?	NR	3E-9		0.0341932	[0.023-0.046] unit increase	Illumina [4804024] (imputed)	N
1444	chr2	112665200	112665201	rs17174870	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2q13	MERTK	rs17174870-G	NR	1E-8		1.11	[1.09-1.13]	Illumina [465434]	N
1444	chr2	112668834	112668835	rs4848861	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q13	MERTK	rs4848861-C	0.319572	8E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1444	chr2	112671946	112671947	rs2871876	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q13		rs2871876-?	NR	3E-10		0.0143316	[0.0099-0.0187] unit decrease	Affymetrix [20259828] (imputed)	N
1444	chr2	112674148	112674149	rs4264571	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q13	MERTK	rs4264571-T	0.697314	7E-10		0.0123151	[0.0084-0.0162] unit increase	NR [13737936] (imputed)	N
1444	chr2	112689979	112689980	rs6755970	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q13	MERTK	rs6755970-A	0.38	3E-8		5.55	z-score increase	Affymetrix [4312306] (imputed)	N
1444	chr2	112702190	112702191	rs112977309	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs112977309-C	NR	1E-26		0.627	unit decrease	Illumina [NR]	N
1445	chr2	112732346	112732346	rs35594851	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs35594851-AAAAAAGAAAGA		5E-7		0.118	[NR] unit decrease	Illumina [NR]	N
1445	chr2	112744259	112744260	rs10207726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q13		rs10207726-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1445	chr2	112746937	112746937	rs542733750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q13		rs542733750-CT	NR	4E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1445	chr2	112746937	112746937	rs542733750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q13		rs542733750-CT	NR	1E-8		0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1445	chr2	112759181	112759182	rs4519530	34184781	O'Connor E	2021-06-29	Ann Neurol	Genome Wide Association Study Identifies Risk Loci For Cluster Headache.	Cluster headache	1,443 European ancestry cases, 6,748 European ancestry controls	NA	2q13	MERTK	rs4519530-C	0.62	7E-17		1.47	[1.34-1.61]	Illumina [NR] (imputed)	N
1445	chr2	112764393	112764394	rs10864895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q13		rs10864895-A	NR	1E-9		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1445	chr2	112764393	112764394	rs10864895	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2q13	MERTK	rs10864895-?	NR	3E-11		0.0016	[0.001-0.0022] unit decrease	Affymetrix [21347608] (imputed)	N
1445	chr2	112764393	112764394	rs10864895	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2q13	MERTK	rs10864895-?	NR	2E-11		0.0031	[0.0021-0.0041] unit decrease	Affymetrix [21347608] (imputed)	N
1445	chr2	112769720	112769721	rs28377357	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q13		rs28377357-G	0.711941	9E-9		0.054825	[0.035-0.075] increase	Affymetrix [11014269] (imputed)	N
1445	chr2	112769720	112769721	rs28377357	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q13	MERTK	rs28377357-A	0.2933	3E-12		0.1862	[0.13-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1445	chr2	112770769	112770770	rs4374383	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals		MERTK	rs4374383-A	0.42	1E-9	(Duration F0-1/F3-4, transfused)			Illumina [780650] (imputed)	N
1445	chr2	112770798	112770799	rs57116599	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q13	MERTK	rs57116599-?	0.225	1E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1445	chr2	112770798	112770799	rs57116599	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q13	MERTK	rs57116599-G	NR	1E-11		1.0944512	NR	Affymetrix, Illumina [8278136] (imputed)	N
1445	chr2	112779733	112779734	rs12989808	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q13	TMEM87B	rs12989808-?	NR	7E-6	(beta hydroxybutyric acid)	0.32053518	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1445	chr2	112780968	112780969	rs55812028	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q13	MERTK	rs55812028-T	0.2451	4E-13		0.0158	[0.011-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1445	chr2	112782263	112782264	rs35643003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q13		rs35643003-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1445	chr2	112785236	112785237	rs6541998	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q13	MERTK	rs6541998-T	0.39	9E-10		6.13	z-score increase	Affymetrix [4314223] (imputed)	N
1445	chr2	112788464	112788465	rs13015619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q13	MERTK	rs13015619-C	0.34489	4E-11		0.015420719	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1445	chr2	112788614	112788615	rs4848969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q13		rs4848969-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1445	chr2	112795491	112795492	rs34589210	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q13	NR	rs34589210-G	0.8571	7E-9		0.039	[0.026-0.052] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1445	chr2	112810143	112810147	rs36153567	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs36153567-TTCTCTT	NR	2E-15		0.154	unit decrease	Illumina [NR]	N
1445	chr2	112823113	112823114	rs74677818	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q13	NR	rs74677818-C	0.8646	3E-9		0.0357	[0.024-0.047] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1445	chr2	112823319	112823320	rs10171979	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	2q13	MERTK, TMEM87B	rs10171979-C	NR	3E-6		1.2	[1.11-1.30]	Illumina [7436415] (imputed)	N
1445	chr2	112852717	112852718	rs4241120	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q13	NR	rs4241120-?	NR	8E-6		0.0081179	[0.0046-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
1446	chr2	112856164	112856165	rs4849007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	2q13		rs4849007-A	NR	5E-12		0.0748	[0.054-0.096] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1446	chr2	112862670	112862671	rs7595574	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q13	TMEM87B	rs7595574-G	0.508215	2E-13		0.016510721	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1446	chr2	112864368	112864369	rs9308669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q13		rs9308669-G	NR	5E-18		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1446	chr2	112870729	112870730	rs7581849	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q13	TMEM87B	rs7581849-A	0.6388	9E-11		0.1832	[0.13-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1446	chr2	112878743	112878744	rs6730057	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q13		rs6730057-A	0.514	1E-8				Affymetrix [10369434] (imputed)	N
1446	chr2	112884350	112884354	rs149731228	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	2q13	NR	rs149731228-AAAAG	NR	3E-6		0.2152	[0.12-0.31] SD units decrease	NR [10700000] (imputed)	N
1446	chr2	112888105	112888106	rs10779884	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IAPP	5,365 Icelandic ancestry individuals	NA			rs10779884-G	0.452	3E-14		0.144546	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
1446	chr2	112888105	112888106	rs10779884	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs10779884-A	0.4826	4E-6		4.62	z score increase	Illumina [7275796] (imputed)	N
1446	chr2	112902226	112902227	rs112165031	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	2q13	FBLN7	rs112165031-?		3E-6	(Additive)	2.5	[1.70-3.70]	Illumina [5600610] (imputed)	N
1446	chr2	112915129	112915130	rs4318395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q13	FBLN7	rs4318395-T	0.306679	3E-14		0.01846623	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1446	chr2	112918468	112918469	rs113858761	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q13	NR	rs113858761-T	NR	3E-25		0.596	unit decrease	Illumina [NR]	N
1446	chr2	112925195	112925196	rs183813555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q13	FBLN7	rs183813555-T	0.002	2E-6		0.142	unit decrease	Illumina [NR] (imputed)	N
1446	chr2	112930063	112930064	rs10191773	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	2q13	NR	rs10191773-?	NR	5E-6		0.0361	[0.021-0.052] unit increase	Illumina [at least 560000] (imputed)	N
1446	chr2	112938350	112938351	rs115611612	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	2q13	FBLN7	rs115611612-A	0.063	8E-6		1.66	[1.35-2]	Illumina [64973696] (imputed)	N
1446	chr2	112941371	112941372	rs4550673	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q13	FBLN7	rs4550673-A	0.916888	2E-8		0.0193007	[0.013-0.026] unit increase	Affymetrix [NR] (imputed)	N
1446	chr2	112943582	112943583	rs4849051	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q13		rs4849051-G	0.25	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
1446	chr2	112945187	112945188	rs4848281	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q13		rs4848281-T	0.25	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
1446	chr2	112948953	112948954	rs12613586	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q13	NR	rs12613586-T	0.881	6E-6		0.024205005	[0.014-0.035] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1446	chr2	112950520	112950521	rs10190845	29170203	Alonso N	2017-11-23	Ann Rheum Dis	Identification of a novel locus on chromosome 2q13, which predisposes to clinical vertebral fractures independently of bone density.	Fractures (vertebral)	1,553 European ancestry cases, 4,340 European ancestry controls	694 European ancestry cases, 2,105 European ancestry controls, 334 cases, 1,657 controls	2q13	FBLN7	rs10190845-A	0.03	1E-9		1.75	[1.45-2.12]	Affymetrix, Illumina [2366456] (imputed)	N
1446	chr2	112962271	112962272	rs116189765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q14.1	NR	rs116189765-G	NR	6E-13		0.0409	[0.03-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1447	chr2	113109589	113109590	rs76773696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q14.1		rs76773696-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1448	chr2	113200175	113200176	rs181645721	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	2q14.1	NR	rs181645721-G	0.01077	1E-6		0.7137	[0.43-1] unit decrease	Illumina [10677593] (imputed)	N
1448	chr2	113211682	113211683	rs71414660	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q14.1		rs71414660-?	NR	4E-8				NR [NR]	N
1448	chr2	113215795	113215796	rs56263114	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.1	NR	rs56263114-A	0.06098	5E-9	(ACAT2)	0.4344	NR unit increase	Illumina [1671387] (imputed)	N
1448	chr2	113225154	113225155	rs3979376	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q14.1	NR	rs3979376-A	0.475277	1E-9		0.0044478	[0.0028-0.0061] unit increase	Affymetrix [16582909] (imputed)	N
1448	chr2	113225154	113225155	rs3979376	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q14.1	NR	rs3979376-A	0.475277	6E-8		0.00451441	[0.0027-0.0063] unit increase	Affymetrix [16582965] (imputed)	N
1448	chr2	113234315	113234316	rs7581524	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q14.1		rs7581524-C	0.716	1E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1448	chr2	113234315	113234316	rs7581524	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q14.1	NR	rs7581524-T	0.279	2E-9		0.00884175	[0.006-0.0117] unit increase	NR [~ 9732723] (imputed)	N
1448	chr2	113240182	113240183	rs3811038	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q14.1		rs3811038-T	0.724	9E-10		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1448	chr2	113240182	113240183	rs3811038	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q14.1	NR	rs3811038-C	0.279	3E-18		0.0104798	[0.0081-0.0128] unit increase	NR [9732723] (imputed)	N
1448	chr2	113240182	113240183	rs3811038	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q14.1	NR	rs3811038-C	0.279	2E-11		0.019140435	[0.014-0.025] unit increase	NR [~ 10000000] (imputed)	N
1448	chr2	113240182	113240183	rs3811038	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q14.1	NR	rs3811038-C	0.286	1E-10		0.0103779	[0.0072-0.0135] unit decrease	NR [9732723] (imputed)	N
1449	chr2	113246435	113246436	rs75210106	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q14.1	NR	rs75210106-T	0.176676	2E-8	(Conditioned on chr2:113240183)	0.01865936	[0.012-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1449	chr2	113253750	113253751	rs112447441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs112447441-C	0.0066573	4E-10				Affymetrix, Illumina [24246363] (imputed)	N
1449	chr2	113316538	113316539	rs62158591	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs62158591-C	0.929906	4E-8		0.0208235	[0.013-0.028] unit decrease	NR [NR]	N
1449	chr2	113328042	113328043	rs3980078	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q14.1	CHCHD5	rs3980078-A	0.1786	3E-8		0.015629334	[0.01-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1450	chr2	113382053	113382054	rs17587029	31371054	Ruddy KJ	2019-07-29	Fertil Steril	Genetic predictors of chemotherapy-related amenorrhea in women with breast cancer.	Adverse response to chemotherapy (amenorrhea) in breast cancer	457 European ancestry amenorrheic cases, 711 European ancestry post-chemotherapy menses cases	NA	2q14.1	RPS20P11	rs17587029-G	0.05	3E-8		1.84	[NR]	Illumina [5430816] (imputed)	N
1450	chr2	113471248	113471249	rs58686486	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Paenibacillus J abundance in stool	5,959 Finnish ancestry individuals	NA	2q14.1		rs58686486-C	0.0986046	5E-8		0.0477945	[0.031-0.065] unit decrease	Illumina [7980478] (imputed)	N
1450	chr2	113478001	113478001	rs555962557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q14.1	NT5DC4	rs555962557-TCA	0.00524100000000005	4E-11		0.11832411	[0.083-0.153] unit increase	Affymetrix [93095623] (imputed)	N
1450	chr2	113494595	113494596	rs148811971	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q14.1	CKAP2L	rs148811971-T	0.0153852164140163	7E-6	(G_Alloprevotella_HB)	1.0236	[0.58-1.47] unit increase	Illumina [7711310] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	2q14.1		rs76036957-?	NR	5E-19		0.0807931	[0.062-0.1] unit increase	NR [9800000] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	2q14.1		rs76036957-?	NR	1E-107		0.186133	[0.17-0.2] unit decrease	NR [9800000] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-1 levels	21,758 European ancestry individuals	9,173 individuals	2q14.1		rs76036957-A	0.014	3E-11		0.355	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q14.1	CKAP2L	rs76036957-A	0.00917800000000002	3E-54		0.18332396	[0.16-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs76036957-G	0.990838	5E-77				Affymetrix, Illumina [17210439] (imputed)	N
1450	chr2	113496452	113496453	rs76036957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q14.1	NR	rs76036957-G	0.990743	1E-77		0.188634	[0.17-0.21] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1450	chr2	113496571	113496572	rs201984824	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	2q14.1		rs201984824-?	NR	2E-8		0.399784	[0.25-0.55] unit decrease	NR [9800000] (imputed)	N
1451	chr2	113520128	113520129	rs36093393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q14.1	CKAP2L	rs36093393-A	0.08567	6E-18		0.03444857	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1451	chr2	113521753	113521754	rs7594852	31477735	Liu X	2019-09-02	Nat Commun	Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration.	Post-term birth	7,888 European ancestry cases, 60,148 European ancestry controls	670 European ancestry infant cases, 5,626 European ancestry infant controls	2q14.1	CKAP2L, IL1A, IL1B	rs7594852-C	0.53	4E-8		1.1	[1.06-1.14]	Illumina [7583965] (imputed)	N
1451	chr2	113521753	113521754	rs7594852	31477735	Liu X	2019-09-02	Nat Commun	Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration.	Gestational age at birth (child effect)	84,689 European ancestry infants	9,291 European ancestry infants	2q14.1	CKAP2L, IL1A, IL1B	rs7594852-C	0.53	4E-14		0.034	[0.025-0.043] unit increase	Illumina [7646297] (imputed)	N
1451	chr2	113529182	113529183	rs6542095	20844546	Adachi S	2010-09-16	J Hum Genet	Meta-analysis of genome-wide association scans for genetic susceptibility to endometriosis in Japanese population.	Endometriosis	696 Japanese ancestry cases, 825 Japanese ancestry controls	NA	2q14.1	IL1A	rs6542095-C	0.72	3E-6		1.5	[1.27-1.78]	Affymetrix [282838]	N
1451	chr2	113529239	113529240	rs11677416	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	2q14.1	IL1A	rs11677416-?	0.25	7E-7	(olanzapine)			Affymetrix [492900]	N
1451	chr2	113531715	113531715	rs3783553	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	2q14.1	NR	rs3783553-TTGAA	0.25975383	3E-9		0.19852114	[0.13-0.26] unit increase	Affymetrix [536506]	N
1451	chr2	113539245	113539246	rs3783531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q14.1	IL1A	rs3783531-T	0.00313200000000002	4E-10		0.123909384	[0.085-0.163] unit increase	Affymetrix [93095623] (imputed)	N
1451	chr2	113539245	113539246	rs3783531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q14.1	IL1A	rs3783531-T	0.00313300000000005	2E-15		0.15725712	[0.12-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1451	chr2	113561771	113561772	rs34017101	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	2q14.1		rs34017101-T	0.013225	6E-7		2.1101499	NR	Affymetrix [7846216] (imputed)	N
1451	chr2	113563360	113563361	rs10167914	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	2q14.1	IL1A*, IL36RN, IL36B, IL37	rs10167914-G	0.738617113	3E-12		0.22788282	[0.16-0.29] unit decrease	Affymetrix [536506]	N
1451	chr2	113563360	113563361	rs10167914	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2q14.1	IL1A	rs10167914-G	0.3	5E-8	(EA)	1.11	1.07-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
1451	chr2	113563360	113563361	rs10167914	28537267	Sapkota Y	2017-05-24	Nat Commun	Meta-analysis identifies five novel loci associated with endometriosis highlighting key genes involved in hormone metabolism.	Endometriosis	14,926 European ancestry cases, 189,715 European ancestry controls, 2,119 Japanese ancestry cases, 2,143 Japanese ancestry controls	NA	2q14.1	IL1A	rs10167914-G	0.3	1E-9		1.12	1.08-1.15	Affymetrix, Illumina [up to 6979035] (imputed)	N
1451	chr2	113567429	113567430	rs80111889	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Dysmenorrheic pain severity	5,734 Japanese ancestry female individuals	5,614 Japanese ancestry female individuals	2q14.1	IL1B, IL1A, AC079753.1, CKAP2L, IL37	rs80111889-G	0.7379	2E-16		0.4249356	[0.32-0.53] unit decrease	Affymetrix [536506]	N
1451	chr2	113570808	113570809	rs11680809	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q14.1	IL1B	rs11680809-A	0.566988	3E-8		0.014501	[0.0094-0.0196] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1451	chr2	113572356	113572357	rs12469600	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12469600-?	NR	7E-8		0.310031	[0.2-0.42] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113576725	113576726	rs35145107	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	2q14.1	latit	rs35145107-G	NR	2E-6		1.22	NR	Illumina [up to 1244428] (imputed)	N
1451	chr2	113576901	113576902	rs4849124	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs4849124-A	NR	7E-14		0.154	unit decrease	Illumina [NR]	N
1451	chr2	113576901	113576902	rs4849124	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4849124-?	NR	3E-6		0.262216	[0.15-0.37] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113576914	113576915	rs4849125	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4849125-?	NR	2E-6		0.263571	[0.16-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113578202	113578203	rs7596684	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7596684-?	NR	4E-10		0.379715	[0.26-0.5] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113590389	113590390	rs1143634	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1143634-?	NR	1E-11		0.421482	[0.3-0.54] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113590466	113590467	rs1143633	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q14.1	NR	rs1143633-C	0.6486	8E-9		1.0373445	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1451	chr2	113590466	113590467	rs1143633	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q14.1	NR	rs1143633-C	0.6486	1E-9		1.0362694	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1451	chr2	113590466	113590467	rs1143633	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q14.1	IL1B	rs1143633-C	0.7	2E-10		1.034	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1451	chr2	113594386	113594387	rs1143627	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1143627-?	NR	7E-19		0.518617	[0.4-0.63] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113594866	113594867	rs16944	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs16944-?	NR	7E-19		0.519201	[0.4-0.63] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113595828	113595829	rs1143623	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1143623-?	NR	5E-17		0.523243	[0.4-0.65] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113596284	113596288	rs10560589	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2q14.1	RP11-67L14.1	rs10560589-CTCTT	0.9903	9E-6		0.4507	[0.25-0.65] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1451	chr2	113598254	113598255	rs12621220	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12621220-?	NR	4E-17		0.525852	[0.4-0.65] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113600325	113600326	rs13013349	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13013349-?	NR	2E-18		0.522324	[0.41-0.64] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113603727	113603728	rs10169916	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs10169916-?	NR	8E-19		0.517655	[0.4-0.63] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113609567	113609568	rs13008855	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q14.1	AC079753.4	rs13008855-T	0.265549	9E-10		0.015914328	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1451	chr2	113609567	113609568	rs13008855	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13008855-?	NR	3E-16		0.509049	[0.39-0.63] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113609885	113609886	rs6735739	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	2q14.1	NR	rs6735739-T	0.334	4E-8		1.07	[1.04-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
1451	chr2	113609885	113609886	rs6735739	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6735739-?	NR	6E-18		0.504626	[0.39-0.62] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113610779	113610780	rs12053091	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12053091-?	NR	8E-17		0.526678	[0.4-0.65] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113619229	113619230	rs35520189	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q14.1	Intergenic	rs35520189-C		6E-7		0.052	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1451	chr2	113619229	113619230	rs35520189	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q14.1	Intergenic	rs35520189-C		6E-6	(women)	0.064	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1451	chr2	113623279	113623280	rs2466446	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2466446-?	NR	8E-19		0.52318	[0.41-0.64] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113627233	113627234	rs2708914	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708914-?	NR	8E-19		0.523497	[0.41-0.64] unit increase	Affymetrix [656292] (imputed)	N
1451	chr2	113628300	113628301	rs2708916	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708916-?	NR	8E-19		0.523799	[0.41-0.64] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113630301	113630302	rs4334503	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4334503-?	NR	3E-14		0.455214	[0.34-0.57] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113631524	113631525	rs11674397	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11674397-?	NR	3E-14		0.455761	[0.34-0.57] unit decrease	Affymetrix [656292] (imputed)	N
1451	chr2	113639229	113639230	rs7581834	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7581834-?	NR	3E-14		0.456066	[0.34-0.57] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113641943	113641944	rs13021862	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q14.1		rs13021862-G	0.741	3E-11				Affymetrix [10369434] (imputed)	N
1452	chr2	113645689	113645690	rs2723152	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723152-?	NR	2E-16		0.519017	[0.4-0.64] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113645941	113645942	rs2708924	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708924-?	NR	1E-6		0.423815	[0.25-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113650803	113650804	rs2723156	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723156-?	NR	1E-6		0.423843	[0.25-0.59] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113654848	113654849	rs12472089	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12472089-?	NR	6E-9		0.327814	[0.22-0.44] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113658014	113658015	rs11690539	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11690539-?	NR	6E-9		0.32778	[0.22-0.44] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113658074	113658075	rs2723154	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723154-?	NR	6E-10		0.432569	[0.3-0.57] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113658704	113658705	rs4591347	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4591347-?	NR	6E-12		0.475211	[0.34-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113663872	113663873	rs2708973	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2q14.1	IL37	rs2708973-?		3E-6	(EA)	31.7	[NR]	Illumina [936149]	N
1452	chr2	113667752	113667753	rs2723175	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723175-?	NR	9E-7		0.423734	[0.25-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113668348	113668349	rs78948780	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs78948780-C	0.987066	2E-8		0.0541477	[0.035-0.073] unit increase	NR [NR]	N
1452	chr2	113669077	113669078	rs2708965	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708965-?	NR	9E-7		0.42424	[0.26-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113669579	113669580	rs2708962	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708962-?	NR	9E-7		0.424571	[0.26-0.59] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113669824	113669825	rs2708961	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708961-?	NR	8E-7		0.42597	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113670374	113670375	rs2708960	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708960-?	NR	7E-7		0.428543	[0.26-0.6] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113670414	113670415	rs2708959	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708959-?	NR	7E-7		0.428784	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113670474	113670475	rs2708958	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708958-?	NR	6E-7		0.433028	[0.26-0.6] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113670480	113670481	rs2723169	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723169-?	NR	6E-7		0.433276	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113670889	113670890	rs2723168	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723168-?	NR	6E-7		0.433327	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113670948	113670949	rs2708957	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708957-?	NR	6E-7		0.433327	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113671135	113671136	rs2464913	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2464913-?	NR	6E-7		0.433327	[0.26-0.6] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113671197	113671198	rs2466448	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2466448-?	NR	6E-7		0.433327	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113671377	113671378	rs3811046	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs3811046-?	NR	3E-22		0.52975	[0.42-0.64] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113671409	113671410	rs3811047	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs3811047-?	NR	3E-22		0.530003	[0.42-0.64] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113672567	113672568	rs2723177	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723177-?	NR	4E-7		0.438074	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113674708	113674709	rs2708943	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708943-?	NR	4E-7		0.438695	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113674720	113674721	rs2723183	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723183-?	NR	4E-7		0.439888	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113675268	113675269	rs2723187	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723187-?	NR	4E-7		0.441019	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113675427	113675428	rs2723189	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723189-?	NR	3E-7		0.44209	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113676218	113676219	rs2708947	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708947-?	NR	3E-7		0.442097	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113676380	113676381	rs2723192	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723192-?	NR	3E-7		0.442104	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113676570	113676571	rs2708948	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708948-?	NR	3E-7		0.442102	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113676954	113676955	rs4458215	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4458215-?	NR	2E-13		0.435481	[0.32-0.55] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113677618	113677619	rs2708949	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708949-?	NR	4E-7		0.439682	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113678603	113678604	rs10199469	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs10199469-?	NR	4E-7		0.439679	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113678688	113678689	rs17042542	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17042542-?	NR	4E-7		0.439679	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113678855	113678856	rs4241122	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4241122-?	NR	3E-22		0.5299	[0.42-0.64] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113678900	113678901	rs2708953	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708953-?	NR	4E-7		0.439827	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113678976	113678977	rs13420333	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13420333-?	NR	4E-6		0.425454	[0.24-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113680113	113680114	rs2708954	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708954-?	NR	4E-7		0.440216	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113680435	113680436	rs13023984	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13023984-?	NR	2E-7		0.435634	[0.27-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113681440	113681441	rs4849133	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4849133-?	NR	4E-7		0.436366	[0.27-0.61] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113682620	113682621	rs13023868	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13023868-?	NR	4E-7		0.436338	[0.27-0.61] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113682770	113682771	rs7577574	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7577574-?	NR	5E-7		0.433559	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113683874	113683875	rs10864907	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	2q14.1	IL37	rs10864907-?	NR	7E-6	(FEV1)			Affymetrix [246010]	N
1452	chr2	113686415	113686416	rs2708925	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2708925-?	NR	8E-7		0.426041	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113688730	113688731	rs2723202	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723202-?	NR	8E-7		0.426965	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113688868	113688869	rs2723201	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723201-?	NR	8E-7		0.426909	[0.26-0.6] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113689746	113689747	rs2723197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q14.1		rs2723197-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1452	chr2	113690076	113690077	rs2723196	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723196-?	NR	8E-7		0.426868	[0.26-0.6] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113691403	113691404	rs12467847	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2q14.1	intergenic	rs12467847-?	NR	5E-6	(SF4)			Affymetrix [5476100] (imputed)	N
1452	chr2	113693794	113693795	rs11683669	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11683669-?	NR	7E-14		0.443409	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113693824	113693825	rs11694657	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11694657-?	NR	7E-14		0.443295	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113693916	113693917	rs2723164	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723164-?	NR	1E-6		0.415419	[0.25-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113694144	113694145	rs11689621	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11689621-?	NR	2E-13		0.438945	[0.32-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113694234	113694235	rs11694863	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11694863-?	NR	7E-14		0.442774	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113694268	113694269	rs11696002	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11696002-?	NR	7E-14		0.442582	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113694664	113694665	rs7600475	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7600475-?	NR	7E-14		0.44228	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113695119	113695120	rs11692391	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11692391-?	NR	7E-14		0.442136	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113695145	113695146	rs11685418	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11685418-?	NR	7E-14		0.442131	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113695340	113695341	rs17042591	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17042591-?	NR	7E-14		0.442131	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113695358	113695359	rs11692429	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11692429-?	NR	7E-14		0.442101	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113695501	113695502	rs2723162	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2723162-?	NR	2E-6		0.414585	[0.25-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113696345	113696346	rs4074747	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4074747-?	NR	7E-14		0.441685	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113696527	113696528	rs7591311	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7591311-?	NR	1E-6		0.416242	[0.25-0.59] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113696895	113696896	rs13389817	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13389817-?	NR	1E-6		0.416744	[0.25-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113697234	113697235	rs12105482	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12105482-?	NR	4E-13		0.454116	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113698077	113698078	rs11696039	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11696039-?	NR	4E-13		0.454888	[0.33-0.58] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113698135	113698136	rs11690185	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11690185-?	NR	3E-13		0.455255	[0.33-0.58] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113699616	113699617	rs7602576	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7602576-?	NR	9E-14		0.440151	[0.32-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113699980	113699981	rs12465526	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12465526-?	NR	3E-13		0.456161	[0.33-0.58] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113700987	113700988	rs12466653	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12466653-?	NR	3E-13		0.456249	[0.33-0.58] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113701163	113701164	rs12470439	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12470439-?	NR	3E-13		0.45629	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113701382	113701383	rs6722962	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6722962-?	NR	3E-13		0.456321	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113701597	113701598	rs6723197	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6723197-?	NR	3E-13		0.456353	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113703063	113703064	rs12466604	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12466604-?	NR	3E-13		0.456397	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113703280	113703281	rs12464758	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12464758-?	NR	3E-13		0.456412	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113703492	113703493	rs7597623	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs7597623-?	NR	8E-14		0.441991	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113703645	113703646	rs12995439	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12995439-?	NR	3E-13		0.456426	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113704723	113704724	rs4592853	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4592853-?	NR	7E-14		0.442229	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113705089	113705090	rs13399759	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13399759-?	NR	1E-6		0.423581	[0.25-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113705402	113705403	rs12614316	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12614316-?	NR	3E-13		0.456437	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113705672	113705673	rs13026837	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13026837-?	NR	3E-13		0.456435	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113706170	113706171	rs3923566	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs3923566-?	NR	7E-14		0.442749	[0.33-0.56] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113708025	113708026	rs11680975	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11680975-?	NR	7E-14		0.442884	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113709875	113709876	rs12466697	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12466697-?	NR	3E-13		0.456403	[0.33-0.58] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113712406	113712407	rs139898952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q14.1		rs139898952-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1452	chr2	113713057	113713058	rs11680584	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11680584-?	NR	5E-14		0.445176	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113714943	113714944	rs11677903	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11677903-?	NR	5E-14		0.445171	[0.33-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113714975	113714976	rs12617864	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q14.1	IL37, IL36G	rs12617864-G	0.25	6E-9		5.81	z-score increase	Affymetrix [4312306] (imputed)	N
1452	chr2	113714975	113714976	rs12617864	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12617864-?	NR	3E-13		0.455791	[0.33-0.58] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113716176	113716177	rs1317913	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1317913-?	NR	1E-6		0.278383	[0.17-0.39] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113716305	113716306	rs17659543	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17659543-?	NR	4E-10		0.41871	[0.29-0.55] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113717184	113717185	rs13415097	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13415097-?	NR	4E-10		0.418925	[0.29-0.55] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113717523	113717524	rs13426809	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13426809-?	NR	4E-6		0.416846	[0.24-0.59] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113721111	113721112	rs10496446	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs10496446-?	NR	2E-6		0.260882	[0.15-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113723476	113723477	rs11689250	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11689250-?	NR	2E-6		0.260627	[0.15-0.37] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113725171	113725172	rs11692384	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11692384-?	NR	2E-6		0.260418	[0.15-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113726881	113726882	rs17607787	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17607787-?	NR	2E-9		0.40038	[0.27-0.53] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113728388	113728389	rs11676013	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11676013-?	NR	2E-6		0.260484	[0.15-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113730424	113730425	rs12616801	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs12616801-?	NR	1E-6		0.265919	[0.16-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113732559	113732560	rs6542107	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6542107-?	NR	3E-9		0.3997	[0.27-0.53] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113732808	113732809	rs13418326	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13418326-?	NR	2E-6		0.260859	[0.15-0.37] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113738022	113738023	rs13410389	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13410389-?	NR	3E-9		0.397017	[0.27-0.53] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113739674	113739675	rs13392494	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13392494-?	NR	3E-9		0.397004	[0.27-0.53] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113745811	113745812	rs17042691	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17042691-?	NR	4E-9		0.39465	[0.26-0.53] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113750469	113750470	rs1446516	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1446516-?	NR	5E-9		0.390675	[0.26-0.52] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113755056	113755057	rs62157666	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs62157666-G	NR	2E-7		0.457	unit decrease	Illumina [NR]	N
1452	chr2	113756776	113756777	rs13033104	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13033104-?	NR	4E-6		0.255851	[0.15-0.36] unit decrease	Affymetrix [656292] (imputed)	N
1452	chr2	113759329	113759330	rs6714534	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6714534-?	NR	7E-9		0.387678	[0.26-0.52] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113759949	113759950	rs28938790	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.1	NR	rs28938790-?	NR	2E-7				Affymetrix [NR]	N
1452	chr2	113763462	113763463	rs2305152	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2305152-?	NR	3E-6		0.261465	[0.15-0.37] unit increase	Affymetrix [656292] (imputed)	N
1452	chr2	113768813	113768814	rs28946269	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	2q14.1	intergenic	rs28946269-T	0.0612277	9E-6		1.6264	[1.31188-2.01632]	NR [7263501] (imputed)	N
1453	chr2	113782058	113782059	rs10496447	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs10496447-?	NR	2E-9		0.421763	[0.28-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113782328	113782329	rs17660913	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs17660913-?	NR	2E-9		0.421768	[0.28-0.56] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113790257	113790258	rs11123155	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Pain medicine use during menstruation	1,813 Japanese ancestry female cases, 3,921 Japanese ancestry female controls	1,494 Japanese ancestry female cases, 4,120 Japanese ancestry female controls	2q14.1	IL1A*, IL36RN, IL36B, IL37	rs11123155-C	0.722	2E-9		0.1937211	[0.13-0.26] unit decrease	Affymetrix [536506]	N
1453	chr2	113791088	113791089	rs148104667	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs148104667-T	0.981507	1E-10		0.0503992	[0.035-0.066] unit increase	NR [NR]	N
1453	chr2	113795196	113795197	rs4848312	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-1-receptor antagonist levels	21,758 European ancestry individuals	9,173 individuals	2q14.1		rs4848312-A	0.3	2E-48		0.1472	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1453	chr2	113797676	113797677	rs2862774	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2862774-?	NR	4E-6		0.284154	[0.16-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113797676	113797677	rs2862774	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q14.1	IL36B	rs2862774-?	NR	5E-6		0.16	[0.086-0.234] unit increase	Illumina [at least 13000000] (imputed)	N
1453	chr2	113801897	113801898	rs2034260	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Dysmenorrheic pain severity	5,734 Japanese ancestry female individuals	5,614 Japanese ancestry female individuals	2q14.1	NR	rs2034260-C	0.70645	3E-7		0.25411773	[0.16-0.35] unit decrease	Affymetrix [536506]	N
1453	chr2	113829235	113829236	rs4849147	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs4849147-A	0.307311	3E-10		0.0136355	[0.0094-0.0179] unit decrease	NR [NR]	N
1453	chr2	113831181	113831182	rs3811055	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q14.1	IL1F10	rs3811055-?	NR	2E-8		0.0156	[0.011-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1453	chr2	113832311	113832312	rs6761276	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q14.1	IL1F10	rs6761276-T	0.432632	3E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1453	chr2	113832311	113832312	rs6761276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q14.1	NR	rs6761276-C	NR	4E-13		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr2	113832311	113832312	rs6761276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q14.1	NR	rs6761276-C	NR	3E-28		0.0266	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr2	113832311	113832312	rs6761276	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q14.1	IL1RN	rs6761276-C	0.578	2E-14	(Interleukin-1 receptor antagonist protein, IL1RN.5353.89.2)	0.19	[0.15-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
1453	chr2	113832311	113832312	rs6761276	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2q14.1	IL1RN	rs6761276-?	0.37	7E-6	(IL1RA)			Illumina [496032]	N
1453	chr2	113832332	113832333	rs6743376	24182552	Matteini AM	2013-10-29	Cytokine	Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.	Inflammatory biomarkers	4,443 European ancestry older adult individuals	NA	2q14.1	IL1F10	rs6743376-A	0.43	2E-26	(IL-1ra)	0.13	[0.11-0.15] unit increase	Illumina [2543887] (imputed)	N
1453	chr2	113833569	113833570	rs13011842	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13011842-?	NR	2E-8		0.360731	[0.23-0.49] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113834433	113834434	rs12468224	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1R1	5,362 Icelandic ancestry individuals	NA	2q14.1		rs12468224-G	0.3647	1E-19		0.165797	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1453	chr2	113835521	113835522	rs11682107	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q14.1	IL1RN	rs11682107-G	0.4459375	1E-6	(IL1RN, 5353_89_2)	0.11636677	[0.069-0.163] unit increase	Illumina [> 1000000] (imputed)	N
1453	chr2	113836943	113836944	rs10186133	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q14.1	IL1F10	rs10186133-T	0.5962	1E-6		0.0281	[0.017-0.039] unit decrease	NR [8041861] (imputed)	N
1453	chr2	113837764	113837765	rs12711751	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	2q14.1	IL1F10	rs12711751-T	NR	1E-11				NR [2501749] (imputed)	N
1453	chr2	113838101	113838102	rs13409360	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	2q14.1	IL1F10	rs13409360-A	NR	5E-15				NR [25015711] (imputed)	N
1453	chr2	113838144	113838145	rs13409371	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2q14.1	IL1F10	rs13409371-A	0.43	5E-36		0.048	[0.04-0.056] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1453	chr2	113840013	113840014	rs13030546	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13030546-?	NR	3E-6		0.287933	[0.17-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113840574	113840575	rs10176274	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	C-reactive protein levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q14.1	IL1F10, IL1RN	rs10176274-?		4E-10		0.0378	[0.026-0.05] unit increase	Illumina [31500000] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	2q14.1		rs6734238-A	0.597083	3E-9		0.0246657	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	2q14.1		rs6734238-A	0.597102	5E-9		0.0245409	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q14.1		rs6734238-G	NR	5E-48		0.0336	[0.029-0.038] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q14.1		rs6734238-G	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q14.1		rs6734238-G	NR	2E-14		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q14.1		rs6734238-G	NR	6E-18		0.0199	[0.015-0.024] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q14.1		rs6734238-A	0.598	4E-31				Affymetrix [10369434] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2q14.1	IL1F10	rs6734238-?	NR	3E-26		0.0026	[0.002-0.0032] unit decrease	Affymetrix [21347608] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2q14.1	IL1F10	rs6734238-?	NR	3E-16		0.0035	[0.0027-0.0043] unit decrease	Affymetrix [21347608] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q14.1	IL1F10, IL1RN	rs6734238-A	0.6	5E-16		8.1	z-score increase	Affymetrix [4314223] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	33517400	Ahluwalia TS	2021-01-30	Hum Mol Genet	Genome-Wide Association Study of Circulating Interleukin 6 Levels Identifies Novel Loci.	Interleukin-6 levels	52,654 European ancestry individuals	14,774 European ancestry individuals	2q14.1	IL1F10, IL1RN	rs6734238-G	0.419937	2E-11		0.025056	[0.016-0.034] unit increase	Affymetrix, Illumina, Perlegen [2454025] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-1-receptor antagonist levels	21,758 European ancestry individuals	9,173 individuals	2q14.1		rs6734238-A	0.61	3E-110		0.2052	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402401	5E-51		0.034074977	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402607	6E-12		0.01578933	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402602	9E-14		0.017052958	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402403	8E-51		0.034983642	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402283	7E-12		0.0173998	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.402345	3E-18		0.019539496	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.325488	2E-80				Affymetrix, Illumina [24649327] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.402192	3E-77		0.036475	[0.033-0.04] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.332188	1E-22				Affymetrix, Illumina [24588908] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.403063	2E-19		0.016858	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.359097	2E-96				Affymetrix, Illumina [23114412] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.40298	2E-90		0.03936	[0.036-0.043] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.341743	2E-19				Affymetrix, Illumina [24246363] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.402727	5E-20		0.016935	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.33563	3E-27				Affymetrix, Illumina [20825802] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q14.1	NR	rs6734238-G	0.401953	1E-28		0.021729	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	2q14.1	NR	rs6734238-?	NR	1E-17		0.07473537	[0.058-0.092] unit increase	Illumina [30861016] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	2q14.1	IL1F10	rs6734238-A	0.59	6E-38	(BMI-adjusted)	0.05	[0.042-0.058] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	2q14.1	IL1F10	rs6734238-G	NR	7E-9		0.011635943	[0.0077-0.0156] unit decrease	Illumina [242289]	N
1453	chr2	113841029	113841030	rs6734238	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		2q14.1	IL1F10, IL1RN	rs6734238-?	NR	2E-23		0.0106	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		2q14.1	IL1F10, IL1RN	rs6734238-?	NR	4E-24		0.0106	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q14.1	RNU6-1180P	rs6734238-G	0.4034	1E-17		0.03115854	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	2q14.1	IL1F10	rs6734238-A	NR	6E-17				NR [2501549] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	2q14.1	IL1F10	rs6734238-G	0.41	7E-30		0.0106	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	2q14.1	NR	rs6734238-?	NR	2E-8		0.0117	[0.0076-0.0158] unit decrease	Illumina [NR] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q14.1	IL1RN, IL1F10	rs6734238-A	0.58	6E-19	(EA)	0.009	[0.007-0.011] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	2q14.1	IL1RN, IL1F10	rs6734238-G	0.446	9E-10	(AA women)	0.108	[0.073-0.143] unit decrease	Affymetrix [up to 2203609] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-1-receptor antagonist levels	706 African American individuals	NA	2q14.1	U6.309;U6, IL1ra, IL1F5, IL1F8, IL1F10	rs6734238-G	0.43	1E-6		0.05	unit decrease	Affymetrix [5396780] (imputed)	N
1453	chr2	113841029	113841030	rs6734238	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	2q14.1	IL1F10	rs6734238-G	NR	2E-17		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1453	chr2	113841781	113841782	rs11687782	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11687782-?	NR	2E-6		0.243843	[0.14-0.34] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113844174	113844175	rs111354213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q14.1		rs111354213-C	NR	4E-20		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1453	chr2	113844174	113844175	rs111354213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q14.1		rs111354213-C	NR	3E-22		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1453	chr2	113844383	113844384	rs6741180	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q14.1	IL1F10, IL1RN	rs6741180-A	0.39	9E-21		9.35	z-score increase	Affymetrix [4311822] (imputed)	N
1453	chr2	113844552	113844553	rs6731551	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6731551-?	NR	2E-6		0.244928	[0.14-0.35] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q14.1	NR	rs6728590-G	NR	4E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q14.1	NR	rs6728590-G	NR	6E-16		0.0203	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q14.1	NR	rs6728590-G	NR	2E-43		0.0348	[0.03-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q14.1	NR	rs6728590-G	NR	6E-15		0.0196	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q14.1	NR	rs6728590-G	NR	8E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1453	chr2	113844599	113844600	rs6728590	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6728590-?	NR	2E-6		0.24494	[0.14-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113844785	113844786	rs13027999	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13027999-?	NR	3E-6		0.285775	[0.17-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113845079	113845080	rs4368340	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4368340-?	NR	2E-6		0.244962	[0.14-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113845577	113845578	rs11123161	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11123161-?	NR	2E-6		0.24496	[0.14-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113847627	113847628	rs11681884	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	2q14.1	IL1RN, IL1F10, IL36RN	rs11681884-T	0.43	6E-7		0.24	[0.14-0.34] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
1453	chr2	113848653	113848654	rs4849153	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4849153-?	NR	3E-6		0.262464	[0.15-0.37] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113849836	113849837	rs1542176	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1542176-?	NR	2E-6		0.246716	[0.15-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113850113	113850114	rs11123162	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11123162-?	NR	3E-6		0.263356	[0.15-0.37] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113850901	113850902	rs6738377	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6738377-?	NR	2E-6		0.24642	[0.15-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113853349	113853350	rs1665189	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q14.1	NR	rs1665189-?		5E-7				Illumina [4322238] (imputed)	N
1453	chr2	113853380	113853381	rs9973741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q14.1		rs9973741-G	NR	4E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1453	chr2	113853455	113853456	rs62158846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q14.1		rs62158846-T	NR	1E-24		0.0238	[0.019-0.028] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1453	chr2	113860860	113860861	rs10207930	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs10207930-?	NR	4E-6		0.243146	[0.14-0.35] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113863770	113863771	rs2029582	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2029582-?	NR	4E-6		0.243212	[0.14-0.35] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113863770	113863771	rs2029582	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q14.1	IL1RN	rs2029582-C	0.4811	2E-21		0.03421784	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113863770	113863771	rs2029582	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q14.1	IL1RN	rs2029582-C	0.4811	2E-20		0.03338718	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113863770	113863771	rs2029582	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q14.1	IL1RN	rs2029582-C	0.4811	4E-20		0.03310682	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113863770	113863771	rs2029582	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q14.1	IL1RN	rs2029582-C	0.4811	2E-21		0.03421705	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113864478	113864478	rs11473501	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q14.1	IL1RN	rs11473501-TAAA	0.4826	4E-9		0.02101972	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113865833	113865834	rs10171849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q14.1	IL1RN	rs10171849-C	0.3877	5E-11		0.02408378	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113865833	113865834	rs10171849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q14.1	IL1RN	rs10171849-C	0.3878	7E-21		0.03451534	[0.027-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1453	chr2	113866368	113866369	rs315927	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs315927-?	NR	4E-7		0.291866	[0.18-0.4] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113866524	113866525	rs13404928	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs13404928-?	NR	2E-7		0.330247	[0.21-0.45] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q14.1		rs55709272-C	NR	2E-56		0.037	[0.032-0.042] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q14.1		rs55709272-C	NR	2E-73		0.0429	[0.038-0.048] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q14.1	IL1RN	rs55709272-C	0.437136	2E-10		0.014192367	[0.0098-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q14.1	IL1RN	rs55709272-C	0.437128	5E-33		0.026773043	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q14.1	IL1RN	rs55709272-C	0.437151	2E-16		0.018340932	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q14.1	IL1RN	rs55709272-C	0.437106	6E-11		0.0146807	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q14.1	IL1RN	rs55709272-C	0.437134	5E-27		0.023974324	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs55709272-T	0.562779	4E-16				Affymetrix, Illumina [22063850] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q14.1	NR	rs55709272-T	0.561935	3E-17		0.016048	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs55709272-C	0.361507	4E-12				Affymetrix, Illumina [21126107] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs55709272-T	0.563038	3E-102		0.0427795	[0.039-0.047] unit decrease	NR [NR]	N
1453	chr2	113867287	113867288	rs55709272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q14.1		rs55709272-?	NR	1E-57				NR [~ 8900000] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q14.1		rs55709272-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q14.1		rs55709272-?	NR	3E-22				NR [~ 8900000] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs55709272-T	NR	2E-8		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1453	chr2	113867287	113867288	rs55709272	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs55709272-T	0.561	8E-7	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1453	chr2	113869802	113869803	rs1630153	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1630153-?	NR	4E-7		0.291784	[0.18-0.4] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113869842	113869843	rs315931	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs315931-?	NR	4E-7		0.291844	[0.18-0.4] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113874466	113874467	rs4251961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q14.1		rs4251961-C	NR	7E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1453	chr2	113874466	113874467	rs4251961	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	2q14.1	IL1RN	rs4251961-A	0.7528	2E-7		0.0591	[0.037-0.081] unit decrease	Illumina [~ 200000]	N
1453	chr2	113874967	113874968	rs4251967	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4251967-?	NR	3E-7		0.308	[0.19-0.43] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113876497	113876498	rs4251979	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	2q14.1	IL1RN	rs4251979-T	0.733	1E-15		0.008	[0.006-0.010] unit decrease	NR [57525634] (imputed)	N
1453	chr2	113877225	113877226	rs4251984	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4251984-?	NR	4E-7		0.306722	[0.19-0.42] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113877412	113877413	rs4251985	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs4251985-?	NR	5E-7		0.303269	[0.19-0.42] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113880291	113880292	rs2853628	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2853628-?	NR	6E-8		0.33161	[0.21-0.45] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113880946	113880947	rs315936	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs315936-?	NR	4E-7		0.305224	[0.19-0.42] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113883705	113883706	rs315934	27454463	Jones AV	2016-11-01	Pain	Genome-wide association analysis of pain severity in dysmenorrhea identifies association at chromosome 1p13.2, near the nerve growth factor locus.	Dysmenorrheic pain	1,785 European ancestry individuals with no pain, 3,478 European ancestry individuals with little pain, 4,208 European ancestry individuals with moderate pain, 2,420 European ancestry individuals with extreme pain	NA	2q14.1	IL1F10, IL1RN	rs315934-T	0.796	7E-7		0.078	[0.047-0.109] unit increase	Illumina [11942402] (imputed)	N
1453	chr2	113885825	113885826	rs444413	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs444413-?	NR	8E-7		0.294071	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113886383	113886384	rs1794067	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1794067-?	NR	7E-7		0.294647	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113886502	113886503	rs1794068	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1794068-?	NR	7E-7		0.294772	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113887206	113887207	rs419598	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs419598-?	NR	7E-7		0.294997	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113887261	113887262	rs423904	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs423904-?	NR	7E-7		0.294997	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113887272	113887273	rs446433	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs446433-?	NR	7E-7		0.294991	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113887293	113887294	rs495282	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs495282-?	NR	7E-7		0.294984	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113887337	113887338	rs495410	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs495410-?	NR	7E-7		0.294977	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113887398	113887399	rs442710	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs442710-?	NR	7E-7		0.29497	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113887457	113887458	rs408392	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs408392-?	NR	7E-7		0.294972	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113887671	113887672	rs447713	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs447713-?	NR	7E-7		0.294977	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113887802	113887803	rs128964	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs128964-?	NR	7E-7		0.295553	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113888556	113888557	rs451578	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs451578-?	NR	1E-6		0.291633	[0.17-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113888578	113888579	rs432014	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs432014-?	NR	6E-7		0.297075	[0.18-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113888792	113888793	rs454078	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs454078-?	NR	6E-7		0.297243	[0.18-0.41] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113889005	113889006	rs431726	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs431726-?	NR	2E-6		0.287653	[0.17-0.41] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113890372	113890373	rs4252023	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q14.1	IL1RN	rs4252023-A	0.058	2E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1453	chr2	113891774	113891775	rs396201	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	2q14.1	IL1RN	rs396201-C	NR	5E-6		1.027	[1.015- 1.039]	Illumina [6740241] (imputed)	N
1453	chr2	113893863	113893864	rs315946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q14.1	NR	rs315946-A	NR	2E-13		0.0253	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1453	chr2	113895515	113895516	rs2902452	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs2902452-?	NR	2E-6		0.257533	[0.15-0.36] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113896212	113896213	rs6754298	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs6754298-?	NR	2E-6		0.257501	[0.15-0.36] unit increase	Affymetrix [656292] (imputed)	N
1453	chr2	113898788	113898789	rs1374281	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs1374281-?	NR	4E-6		0.253844	[0.15-0.36] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113899024	113899025	rs895496	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs895496-?	NR	4E-6		0.253833	[0.15-0.36] unit decrease	Affymetrix [656292] (imputed)	N
1453	chr2	113900176	113900177	rs11885498	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs11885498-?	NR	9E-6		0.244745	[0.14-0.35] unit decrease	Affymetrix [656292] (imputed)	N
1454	chr2	113934175	113934176	rs13382259	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Diastolic blood pressure	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	2q14.1	PSD4	rs13382259-T	0.043	3E-8	(Pomak)	0.554	[0.36-0.75] unit increase	Illumina [at least 13541454] (imputed)	N
1454	chr2	113948912	113948913	rs45627132	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2q14.1	NR	rs45627132-?	NR	9E-6				Illumina [NR] (imputed)	N
1454	chr2	113949735	113949736	rs3816331	30206230	Offenbacher S	2018-09-11	Nat Commun	GWAS for Interleukin-1? levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.	High IL-1beta levels in gingival crevicular fluid	4,910 European American individuals	NA	2q14.1	NR	rs3816331-?	NR	4E-6		0.306884	[0.18-0.44] unit increase	Affymetrix [656292] (imputed)	N
1454	chr2	113952754	113952756	rs10603865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q14.1		rs10603865-C	NR	3E-25		0.0243	[0.02-0.029] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1454	chr2	113952754	113952756	rs10603865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q14.1		rs10603865-C	NR	4E-26		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1454	chr2	113953132	113953133	rs142138455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q14.1	PSD4	rs142138455-C	0.350215	1E-19		0.023566494	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr2	113953656	113953657	rs4849169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs4849169-C	0.498362	2E-26				Affymetrix, Illumina [23472807] (imputed)	N
1454	chr2	113953656	113953657	rs4849169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q14.1	NR	rs4849169-C	0.482168	4E-28		0.020898	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1454	chr2	113953973	113953973	rs71385890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q14.1		rs71385890-AT	NR	6E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1454	chr2	113953973	113953973	rs71385890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q14.1	PSD4	rs71385890-AT	0.47666	9E-14		0.016783023	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr2	113957180	113957180	rs5833486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q14.1	PSD4	rs5833486-TA	0.221624	2E-33		0.032409444	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr2	113957180	113957180	rs5833486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q14.1	PSD4	rs5833486-TA	0.22161	2E-35		0.033412516	[0.028-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr2	113957180	113957180	rs5833486	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q14.1	PSD4	rs5833486-TA	0.2229	4E-19		0.03883427	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr2	113965197	113965198	rs7563124	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q14.1	PSD4	rs7563124-A	0.2223	8E-20		0.03930806	[0.031-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr2	113965199	113965200	rs7560180	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q14.1	PSD4	rs7560180-T		7E-30		0.03	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1454	chr2	113965199	113965200	rs7560180	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2q14.1	PSD4	rs7560180-T	0.2208	1E-17		0.03704176	[0.029-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q14.1		rs11123169-T	NR	4E-29		0.0197	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q14.1		rs11123169-T	0.733365	3E-16		0.0262295	[0.02-0.033] unit decrease	Illumina [13478778] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.1	NR	rs11123169-T	NR	3E-14		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	2q14.1	NR	rs11123169-A		2E-6				Illumina [458525]	N
1454	chr2	113967074	113967075	rs11123169	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q14.1	AK123617	rs11123169-T	0.677	1E-12		0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q14.1	PSD4	rs11123169-T	0.6769	3E-22		0.0025	[0.0019-0.0031] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	2q14.1	PSD4	rs11123169-T	0.74	1E-11		0.0052	[0.0036-0.0068] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q14.1	PSD4	rs11123169-C	0.32	2E-10		1.0544075	[1.04-1.07]	Affymetrix, Illumina [9585923] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q14.1	PAX8	rs11123169-C	0.3313	4E-11		6.622	NR z score decrease	Illumina [26237160] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q14.1	PSD4, PAX8	rs11123169-C	0.302	8E-15		0.438	[0.25-0.63] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q14.1	PSD4, PAX8	rs11123169-?	NR	2E-15		0.03335	[0.025-0.042] unit increase novel	Illumina [6108953] (imputed)	N
1454	chr2	113967074	113967075	rs11123169	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2q14.1	PSD4, PAX8	rs11123169-?	NR	5E-14		0.03103	[0.023-0.039] unit decrease novel	Illumina [6108953] (imputed)	N
1454	chr2	113967739	113967740	rs13407583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs13407583-A	0.18983	3E-46				Affymetrix, Illumina [24332387] (imputed)	N
1454	chr2	113967739	113967740	rs13407583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs13407583-A	0.19055	3E-39				Affymetrix, Illumina [24653286] (imputed)	N
1454	chr2	113967739	113967740	rs13407583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.1	NR	rs13407583-A	0.190916	1E-43				Affymetrix, Illumina [24558453] (imputed)	N
1454	chr2	113971598	113971599	rs6736334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q14.1		rs6736334-G	NR	2E-20		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1454	chr2	113972944	113972945	rs752590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q14.1	PAX8-AS1	rs752590-G	0.210488	1E-33		0.03266839	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1454	chr2	113972944	113972945	rs752590	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q14.1	NR	rs752590-G	0.210138	2E-49		0.033428	[0.029-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1454	chr2	113972944	113972945	rs752590	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q14.1	NR	rs752590-G	0.210011	1E-41		0.030573	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1454	chr2	113972944	113972945	rs752590	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q14.1	NR	rs752590-G	0.21	5E-46		0.03222	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1454	chr2	113972944	113972945	rs752590	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q14.1		rs752590-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1454	chr2	113972944	113972945	rs752590	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	2q14.1	NR	rs752590-G	0.210808	2E-12		1.2968692	[1.20743024891207-1.39293308913389]	Illumina [11595112] (imputed)	N
1454	chr2	113972944	113972945	rs752590	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	2q14.1	PAX8	rs752590-?	0.21	3E-8		1.34	[1.21-1.49]	Illumina [15504273] (imputed)	N
1454	chr2	113973631	113973632	rs2019137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q14.1	PAX8	rs2019137-A	0.4808	4E-11		0.02384811	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1454	chr2	113975065	113975066	rs1478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q14.1		rs1478-G	NR	4E-28		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1454	chr2	113978939	113978940	rs11123170	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q14.1	PAX8	rs11123170-C	0.6449	1E-27		0.0077	[0.0063-0.0091] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1454	chr2	113978939	113978940	rs11123170	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	2q14.1	PAX8	rs11123170-G	0.35	3E-10		0.0051	[0.0035-0.0067] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1454	chr2	113979159	113979160	rs67802835	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q14.1	NR	rs67802835-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1454	chr2	113979159	113979160	rs67802835	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q14.1		rs67802835-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1454	chr2	113981021	113981022	rs6707386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q14.1	PAX8	rs6707386-A	0.3536	4E-8		0.0175	[0.011-0.024] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1454	chr2	113981021	113981022	rs6707386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q14.1	PAX8	rs6707386-A	0.358	7E-7		0.01959	[0.012-0.027] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1454	chr2	113981021	113981022	rs6707386	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q14.1	NR	rs6707386-A	0.3533	4E-8	(women)	0.0252	[0.016-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1454	chr2	113982039	113982040	rs12619508	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q14.1	PAX8	rs12619508-A	0.47	8E-10		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33794208	Bowden SJ	2021-04-01	Lancet Oncol	Genetic variation in cervical preinvasive and invasive disease: a genome-wide association study.	Cervical intraepithelial neoplasia grade 3 and invasive cervical cancer	764 European ancestry invasive cervical cancer cases, 4,005 European ancestry cervical intraepithelial neoplasia grade 3 cases, 145,545 European ancestry controls	NA	2q14.1	PAX8	rs10175462-?	NR	1E-9		0.87	[0.84-0.91]	Affymetrix [9600464] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.1	NR	rs10175462-A	NR	5E-24		0.0251	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q14.1	NR	rs10175462-A	NR	5E-13		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2q14.1	NR	rs10175462-A	NR	2E-14		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q14.1	NR	rs10175462-A	NR	1E-11		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q14.1	NR	rs10175462-A	NR	1E-9		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cervical cancer	6,563 European ancestry cases, 410,350 European ancestry controls	NA	2q14.1		rs10175462-G	0.638323	8E-14		1.1519	NR	Affymetrix [7846216] (imputed)	N
1454	chr2	113988491	113988492	rs10175462	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q14.1		rs10175462-G	0.638323	3E-11		1.145	[1.1-1.191]	Affymetrix [7846216] (imputed)	N
1454	chr2	113993384	113993385	rs7576384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q14.1		rs7576384-G	NR	2E-53		0.0307	[0.027-0.035] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1454	chr2	113993384	113993385	rs7576384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	2q14.1		rs7576384-G	0.342169	3E-36		0.0445369	[0.038-0.051] unit increase	Illumina [13478792] (imputed)	N
1454	chr2	113993384	113993385	rs7576384	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	2q14.1	PAX8-AS1	rs7576384-?	NR	1E-34		0.04703	[0.04-0.055] unit increase novel	Illumina [6108953] (imputed)	N
1454	chr2	113994594	113994595	rs13405033	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q14.1	NA	rs13405033-T	0.1518	2E-7		0.0139	[0.0086-0.0192] unit increase	NR [~ 27400000] (imputed)	N
1454	chr2	114000865	114000866	rs2863244	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2q14.1		rs2863244-G	0.4382	3E-8		0.01378	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1454	chr2	114008574	114008575	rs10190490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q14.1		rs10190490-A	NR	6E-22		0.0229	[0.018-0.028] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1454	chr2	114010790	114010791	rs4848320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q14.1		rs4848320-T	NR	4E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1454	chr2	114014208	114014209	rs58231626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q14.1	PAX8-AS1, PAX8	rs58231626-A	0.0074	1E-6		0.2913	[0.17-0.41] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1454	chr2	114014208	114014209	rs58231626	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q14.1	PAX8-AS1, PAX8	rs58231626-A	0.0074	3E-7		0.3068	[0.19-0.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1454	chr2	114016400	114016401	rs72831838	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	2q14.1	PAX8	rs72831838-?	0.14	8E-7	(Invasive Only)	1.39	[1.22-1.58]	Illumina [15504273] (imputed)	N
1454	chr2	114018319	114018320	rs895418	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q14.1	NR	rs895418-T	0.4693	2E-21		0.002143	[0.0017-0.0026] unit increase	Affymetrix [NR] (imputed)	N
1454	chr2	114026881	114026882	rs7560701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.1		rs7560701-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1455	chr2	114041975	114041976	rs17626434	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.1	NR	rs17626434-C	0.667545	8E-12		0.0142955	[0.01-0.018] unit increase	NR [NR]	N
1455	chr2	114065571	114065572	rs62158161	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (strength limbic)	18,445 British ancestry individuals	NA	2q14.1		rs62158161-C	0.749	5E-9		0.069	[0.045-0.093] unit increase	Affymetrix [9926107] (imputed)	N
1455	chr2	114065571	114065572	rs62158161	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (global efficiency)	18,445 British ancestry individuals	NA	2q14.1		rs62158161-C	0.749	1E-8		0.066	[0.042-0.09] unit increase	Affymetrix [9926107] (imputed)	N
1455	chr2	114065571	114065572	rs62158161	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (characteristic path length)	18,445 British ancestry individuals	NA	2q14.1		rs62158161-C	0.749	2E-8		0.065	[0.041-0.089] unit decrease	Affymetrix [9926107] (imputed)	N
1455	chr2	114077217	114077218	rs62158166	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	2q14.1	PAX8	rs62158166-G	0.223	9E-10		6.1316633	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1455	chr2	114079247	114079248	rs12616641	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (strength somatomotor)	18,445 British ancestry individuals	NA	2q14.1		rs12616641-C	0.774	1E-9		0.073	[0.049-0.097] unit increase	Affymetrix [9926107] (imputed)	N
1455	chr2	114079247	114079248	rs12616641	34272439	Foo H	2021-07-16	Sci Rep	Novel genetic variants associated with brain functional networks in 18,445 adults from the UK Biobank.	Brain functional connectivity measurement (strength salience)	18,445 British ancestry individuals	NA	2q14.1		rs12616641-C	0.774	1E-8		0.069	[0.045-0.093] unit increase	Affymetrix [9926107] (imputed)	N
1455	chr2	114081826	114081827	rs62158169	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (sleep problems) (binary trait)	72,302 European ancestry cases, 76,450 European ancestry controls	NA	2q14.1	CBWD2, FOXD4L1, PAX8	rs62158169-C	0.784	1E-10		0.015	[0.011-0.019] unit increase	NR [9413637] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2q14.1	PAX8/LOC100130100	rs62158170-A	0.783643	8E-13		1.05	[1.03-1.06]	Affymetrix [14661600] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2q14.1	PAX8/LOC100130100	rs62158170-A	0.783643	1E-16		1.05	[1.03-1.06]	Affymetrix [14661600] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q14.1	NR	rs62158170-A	0.7856	1E-19		1.068	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q14.1	NA	rs62158170-A	0.7856	3E-13	(Male)	1.091	[1.07-1.11]	Affymetrix, Illumina [NR] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	2q14.1	PAX8-AS1	rs62158170-A	0.783	6E-20		0.051	[0.039-0.063] SD units decrease	NR [9926106] (imputed)	N
1455	chr2	114082174	114082175	rs62158170	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q14.1	PAX8	rs62158170-A	0.7834	7E-15		0.1645	[0.12-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1455	chr2	114083119	114083120	rs6737318	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (long sleep)	34,184 European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	2q14.1	PAX8, LOC100130100	rs6737318-G	NR	3E-13		1.079		Affymetrix [14661600] (imputed)	N
1455	chr2	114084595	114084596	rs62158206	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2q14.1		rs62158206-C	0.2189	3E-43		0.04093	[0.035-0.047] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1455	chr2	114084595	114084596	rs62158206	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q14.1	NA	rs62158206-T	0.7808	8E-9	(Female)	1.053	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1455	chr2	114085784	114085785	rs7556815	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q14.1	NR	rs7556815-A	NR	2E-54		2.352	unit increase	Affymetrix [14661600] (imputed)	N
1455	chr2	114085784	114085785	rs7556815	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	2q14.1	PAX8-AS1	rs7556815-G	0.778896	2E-18		0.048654024	[0.038-0.06] SD units decrease	NR [9926106] (imputed)	N
1455	chr2	114089550	114089551	rs2863957	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	2q14.1	PAX8, LOC100130100	rs2863957-C	NR	3E-18		1.056		NR [14661600] (imputed)	N
1455	chr2	114090411	114090412	rs1823125	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	2q14.1	PAX8, LOC101927400, CBWD2	rs1823125-G	0.26	1E-10		3.14	[NR] unit increase	Affymetrix, Illumina [2033301]	N
1455	chr2	114096779	114096780	rs1191682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.1	CBWD2	rs1191682-?	NR	9E-6	(inositol)	0.16703518	[0.093-0.241] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	2q14.1	CHCHD5	rs62158211-G	0.785189	6E-17		0.046838697	[0.036-0.058] SD units decrease	NR [9926106] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Sleep duration	112,411 European ancestry male individuals	NA	2q14.1	NR	rs62158211-T	0.21	1E-12		0.037	[0.027-0.047] unit increase	Affymetrix [at least 12428592] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep traits (multi-trait analysis)	At least 112,586 European ancestry individuals	NA	2q14.1	PAX8	rs62158211-?	0.214	8E-13				Affymetrix [up to 73355677] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Sleep duration	111,975 European ancestry individuals	NA	2q14.1	PAX8	rs62158211-T	0.213	5E-14		0.039	[0.029-0.049] hours increase	Affymetrix [up to 73355677] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Sleep duration (oversleepers vs undersleepers)	10,102 British oversleeper individuals, 28,980 British undersleeper indivdiuals	NA	2q14.1	PAX8	rs62158211-T	0.21	1E-7		1.0638298	[1.04-1.09]	NR [16761225] (imputed)	N
1455	chr2	114106138	114106139	rs62158211	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Sleep duration	127,573 British individuals	47,180 individuals	2q14.1	PAX8	rs62158211-G	0.79	2E-23		0.039	[0.029-0.049] hour decrease	NR [16761225] (imputed)	N
1455	chr2	114143294	114143295	rs55685007	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q14.1	NR	rs55685007-T	0.161	3E-6		0.47	[0.27-0.67] unit increase	Illumina [9469131] (imputed)	N
1455	chr2	114155794	114155795	rs1900325	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	Cigarettes smoked per day in Schizophrenia	3,370 European ancestry individuals	1,802 East Asian individuals	2q14.1	CBWD2	rs1900325-?	NR	2E-6				NR [9500000] (imputed)	N
1456	chr2	114186503	114186504	rs151273313	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs151273313-G	NR	1E-7		0.434	unit decrease	Illumina [NR]	N
1456	chr2	114203172	114203173	rs2592421	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q14.1		rs2592421-A	0.17451	5E-6		0.04024	[0.023-0.058] unit decrease	Affymetrix [15580782] (imputed)	N
1457	chr2	114395827	114395828	rs4849254	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q14.1	chr2mb114	rs4849254-T	0.348406113	4E-6		0.1581	[0.091-0.225] unit increase	Affymetrix [~ 9800000] (imputed)	N
1457	chr2	114403585	114403586	rs112641450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q14.1		rs112641450-A	NR	5E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1458	chr2	114432642	114432643	rs13020428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q14.1		rs13020428-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1458	chr2	114452228	114452229	rs10188078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.1		rs10188078-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1458	chr2	114464088	114464089	rs62168821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q14.1	NR	rs62168821-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1458	chr2	114464088	114464089	rs62168821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q14.1	NR	rs62168821-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1458	chr2	114516872	114516873	rs4560122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.1	SLC35F5	rs4560122-C	NR	1E-9		0.0206871	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1458	chr2	114516872	114516873	rs4560122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	SLC35F5	rs4560122-C	NR	5E-10		0.0211902	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1458	chr2	114517747	114517748	rs4372913	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q14.1	NR	rs4372913-A	0.7875	3E-13		0.0159	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1458	chr2	114517747	114517748	rs4372913	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q14.1	NA	rs4372913-A	0.7875	9E-11		0.014	[0.0097-0.0183] unit decrease	NR [~ 27400000] (imputed)	N
1458	chr2	114528760	114528761	rs62170102	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q14.1	NR	rs62170102-?		7E-6				Illumina [4322238] (imputed)	N
1458	chr2	114541448	114541449	rs10209330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	SLC35F5	rs10209330-T	NR	2E-8		0.0160365	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1458	chr2	114541448	114541449	rs10209330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	SLC35F5	rs10209330-T	NR	8E-9		0.0167085	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1458	chr2	114541448	114541449	rs10209330	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q14.1	NR	rs10209330-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1458	chr2	114541448	114541449	rs10209330	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q14.1	NR	rs10209330-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1459	chr2	114562602	114562603	rs80356007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.1	AC024704.2	rs80356007-G	NR	5E-8		0.0210707	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1459	chr2	114562602	114562603	rs80356007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	AC024704.2	rs80356007-G	NR	4E-8		0.0212105	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
1459	chr2	114571646	114571647	rs4292100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	AC024704.2	rs4292100-A	NR	2E-8		0.0159742	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1459	chr2	114571646	114571647	rs4292100	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	AC024704.2	rs4292100-A	NR	8E-10		0.0176294	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1459	chr2	114584631	114584632	rs72948686	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		2q14.1	intergenic	rs72948686-G	0.031	8E-6		1.083	[0.62-1.55] unit increase	Illumina [640625] (imputed)	N
1459	chr2	114593804	114593805	rs10211038	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q14.1	NR	rs10211038-A	0.189046	2E-10		0.00660374	[0.0045-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1459	chr2	114593804	114593805	rs10211038	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q14.1	NR	rs10211038-A	0.189046	1E-7		0.00615265	[0.0038-0.0085] unit increase	Affymetrix [16582965] (imputed)	N
1459	chr2	114619996	114619997	rs4849294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q14.1		rs4849294-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1459	chr2	114619996	114619997	rs4849294	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q14.1	NR	rs4849294-T	0.63	6E-16		0.015	[0.011-0.019] unit increase	Affymetrix [2446094] (imputed)	N
1459	chr2	114619996	114619997	rs4849294	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q14.1	NR	rs4849294-T	0.63	5E-8				Affymetrix [2446094] (imputed)	N
1459	chr2	114631021	114631022	rs11685654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q14.1	RP11-141B14.1	rs11685654-T	NR	8E-10		0.0180872	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1459	chr2	114643687	114643687	rs757793886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.1	RP11-141B14.1	rs757793886-CA	NR	2E-10		0.0189624	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1459	chr2	114643687	114643687	rs757793886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	RP11-141B14.1	rs757793886-CA	NR	3E-11		0.0197068	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1459	chr2	114643687	114643687	rs757793886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	RP11-141B14.1	rs757793886-CA	NR	7E-12		0.02047	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1460	chr2	114690655	114690656	rs34803179	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs34803179-G	NR	4E-9		0.179	unit decrease	Illumina [NR]	N
1460	chr2	114694829	114694830	rs7558402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.1	ACTR3	rs7558402-G	NR	3E-8		0.0188336	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1460	chr2	114694829	114694830	rs7558402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.1	ACTR3	rs7558402-G	NR	7E-9		0.0196569	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1460	chr2	114694829	114694830	rs7558402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q14.1	ACTR3	rs7558402-G	NR	5E-9		0.0200923	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1460	chr2	114702803	114702804	rs2419081	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	ACTR3	rs2419081-G	NR	6E-10		0.0211564	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1460	chr2	114732240	114732241	rs12472051	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	2q14.1	NR	rs12472051-?		4E-6	(EA)	1.47	[1.12-1.92]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1460	chr2	114757208	114757209	rs17046767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q14.1		rs17046767-C	NR	3E-14		0.0229	[0.017-0.029] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1460	chr2	114757208	114757209	rs17046767	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q14.1	ACTR3, DPP10	rs17046767-G	0.92	1E-13		7.44	z-score increase	Affymetrix [4312306] (imputed)	N
1460	chr2	114757208	114757209	rs17046767	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q14.1	NR	rs17046767-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1460	chr2	114791358	114791359	rs71416580	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q14.1	AC010982.1	rs71416580-T	NR	4E-8		0.028401	[0.018-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1460	chr2	114793666	114793667	rs113141792	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs113141792-G	NR	5E-9		0.446	unit decrease	Illumina [NR]	N
1461	chr2	114819351	114819352	rs78114196	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q14.1	ACTR3	rs78114196-T	0.0220732072515247	5E-7	(F_Sutterellaceae_HB)	1.19011	[0.73-1.66] unit decrease	Illumina [7711310] (imputed)	N
1461	chr2	114886029	114886030	rs4849306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q14.1		rs4849306-G	NR	4E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1461	chr2	114941168	114941169	rs6750839	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	2q14.1	intergenic	rs6750839-?	0.08	8E-6		2.33	[1.56-3.45]	Affymetrix, Illumina [2530150] (imputed)	N
1462	chr2	114963716	114963717	rs6731933	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	2q14.1	LINC01191, DPP10	rs6731933-?	NR	1E-6		0.097	[0.058-0.136] unit increase	NR [6264382] (imputed)	N
1462	chr2	114971912	114971913	rs13018007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	SEPHS1P7	rs13018007-G	NR	3E-8		0.0291965	[0.019-0.04] unit decrease	Affymetrix [321114] (imputed)	N
1462	chr2	114971912	114971913	rs13018007	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q14.1	NR	rs13018007-G	0.08242899999999997	1E-8		0.0126745	[0.0082-0.0172] unit increase	Affymetrix [16585854] (imputed)	N
1462	chr2	114971912	114971913	rs13018007	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q14.1	NR	rs13018007-G	0.08242899999999997	7E-6		0.0121566	[0.007-0.0173] unit increase	Affymetrix [16585866] (imputed)	N
1462	chr2	114971912	114971913	rs13018007	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs13018007-A	NR	6E-7		0.155	unit decrease	Illumina [NR]	N
1462	chr2	114980966	114980967	rs3105491	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q14.1	ACTR3, DPP10	rs3105491-T	0.3	2E-6		1.52	[0.89-2.15] mmHg increase	Illumina [1019297] (imputed)	N
1462	chr2	114990766	114990767	rs112228985	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.1	SEPHS1P7	rs112228985-A	NR	3E-8		0.0225588	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1462	chr2	115049817	115049818	rs4513299	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	2q14.1	intergenic	rs4513299-?	NR	4E-6	(Interleukin-6)			Affymetrix [2543887] (imputed)	N
1463	chr2	115083029	115083030	rs4447605	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.1	NR	rs4447605-?	NR	2E-6				Affymetrix [NR]	N
1463	chr2	115154374	115154376	rs376357816	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs376357816-CTTCCT	NR	1E-8		0.202	unit decrease	Illumina [NR]	N
1464	chr2	115213755	115213756	rs17048372	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in microsatellite instability low/stable colorectal cancer	431 European ancestry cases	NA	2q14.1	DPP10	rs17048372-?		2E-6	(overall survival)	1.91	[1.46-2.48]	Illumina [729737]	N
1464	chr2	115213755	115213756	rs17048372	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	2q14.1	DPP10	rs17048372-?		6E-6	(overall survival)	2.17	[1.55-3.03]	Illumina [729737]	N
1464	chr2	115272712	115272713	rs1346763	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	2q14.1	NR	rs1346763-T	0.32	9E-7	(male)	1.4	[NR]	Illumina [5730693] (imputed)	N
1464	chr2	115273128	115273129	rs75696922	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	2q14.1		rs75696922-?	NR	3E-6		0.33	[0.19-0.47] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1464	chr2	115331869	115331870	rs11693320	30199657	Xu J	2018-09-10	Am J Respir Crit Care Med	Omega-3 Fatty Acids and Genome-wide Interaction Analyses Reveal DPP10-Pulmonary Function Association.	Pulmonary function (FVC) x omega-3 PUFA (docosahexaenoic acid) interaction (2df)	11,165 European ancestry individuals, 797 African ancestry individuals	1,141 European ancestry individuals, 546 African ancestry individuals	2q14.1	DPP10	rs11693320-A	0.82	9E-9				Affymetrix, Illumina [7200000] (imputed)	N
1466	chr2	115490197	115490198	rs7606549	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	2q14.1	DPP10	rs7606549-A	NR	2E-6		0.17774	NR unit decrease	NR [560698] (imputed)	N
1466	chr2	115530840	115530841	rs319858	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	2q14.1	DPP10	rs319858-G	NR	4E-6		0.17288	NR unit decrease	NR [560698] (imputed)	N
1466	chr2	115555163	115555164	rs1519669	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	2q14.1	DPP10	rs1519669-A	0.6238	8E-6		0.0408	[0.023-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1466	chr2	115586938	115586939	rs6732028	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q14.1	DPP10	rs6732028-G	0.247	3E-6	(Birth weight )	0.06	[NR] kg increase	Illumina [899892]	N
1466	chr2	115587621	115587622	rs13421246	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	2q14.1	DPP10, AC068542.1, AC068542.2	rs13421246-C	NR	7E-6	(daytime resting duration)	0.09873	[0.056-0.142] unit decrease	Affymetrix [7141204] (imputed)	N
1467	chr2	115683103	115683104	rs11123259	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	2q14.1	NR	rs11123259-?		2E-6	(genus_Coprococcus)	1.083827	[0.68-1.49] unit decrease	Affymetrix [211319]	N
1468	chr2	115798617	115798618	rs62164492	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.1	Intergenic	rs62164492-C	0.868	1E-8	(MTAG)	0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1468	chr2	115826317	115826318	rs13402497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.1		rs13402497-A	0.4902	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1468	chr2	115826317	115826318	rs13402497	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.1	Intergenic	rs13402497-A	0.4902	6E-9	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1468	chr2	115848828	115848829	rs6720237	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.1	ACTR3	rs6720237-?	NR	7E-6	(CE 20:5)	0.2392173	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
1468	chr2	115848828	115848829	rs6720237	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.1	ACTR3	rs6720237-?	NR	3E-6	(LPC 20:5)	0.24510677	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1469	chr2	115877308	115877309	rs67448492	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	High chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	345 European and unknown ancestry cases, 262 European and unknown ancestry controls	NA	2q14.1	DPP10	rs67448492-?	NR	1E-6		2.564103	[1.75-3.7]	Illumina [> 2600000] (imputed)	N
1469	chr2	115918204	115918205	rs35809114	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell density	6,125 Icelandic ancestry individuals	NA	2q14.1	NR	rs35809114-A	NR	7E-8		0.133	unit increase	Illumina [NR]	N
1469	chr2	115932978	115932979	rs77985378	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Mycoplasmoidaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q14.1		rs77985378-A	0.0148565	4E-8		0.117907	[0.076-0.16] unit decrease	Illumina [7980478] (imputed)	N
1469	chr2	115943932	115943933	rs11693764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q14.1		rs11693764-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1469	chr2	115944445	115944446	rs4849384	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	2q14.1	DPP10	rs4849384-G	0.942	8E-6		1.5625	[1.37-1.76]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1469	chr2	115952584	115952585	rs190662943	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants in depression	7,795 European ancestry responder cases, 1,311 European ancestry non-responder cases	NA	2q14.1	DPP10	rs190662943-?		7E-7		14.419	[5.177-40.161]	Illumina [~ 12000000] (imputed)	N
1469	chr2	115982423	115982424	rs72839264	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q14.1	DPP10	rs72839264-T	0.9966	4E-6		0.4335	[0.25-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1469	chr2	115991850	115991851	rs78464534	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	2q14.1	NR	rs78464534-?	NR	3E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1471	chr2	116145241	116145242	rs11123302	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.1	Intergenic	rs11123302-A	0.2616	4E-8	(MTAG)	0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1471	chr2	116185706	116185707	rs111443797	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2q14.1	NR	rs111443797-A	0.0186	2E-6		0.05239626	[0.031-0.074] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1471	chr2	116241185	116241186	rs1375144	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	2q14.1	NR	rs1375144-?	NR	2E-6	(addtive)			Affymetrix [NR]	N
1472	chr2	116283667	116283668	rs984066	34749984	Borgio JF	2021-11-04	Comput Biol Med	Exome array identifies functional exonic biomarkers for pediatric dental caries.	Pediatric dental caries (decayed, missing and filled teeth >5)	76 Arab ancestry cases, 35 Arab ancestry controls	NA	2q14.1		rs984066-G	0.562	4E-6		0.1	[0.03-0.3]	Illumina [243345]	N
1473	chr2	116430229	116430230	rs7419486	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2q14.1		rs7419486-T	NR	3E-6	(GLM)	1.4142	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1473	chr2	116491245	116491246	rs4308128	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide attempts in major depressive disorder	257 European ancestry cases, 300 European ancestry controls	NA	2q14.1	DPP10	rs4308128-A	0.43	4E-6		1.795	[1.401-2.300]	Illumina [794207]	N
1473	chr2	116496538	116496539	rs77178854	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	2q14.1	DPP10	rs77178854-C	0.99	2E-9	(female)	0.82	[0.55-1.09] unit increase	Illumina [7411206] (imputed)	N
1473	chr2	116496538	116496539	rs77178854	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	2q14.1	DPP10	rs77178854-C	0.99	2E-7		0.58	[0.36-0.8] unit increase	Illumina [7411206] (imputed)	N
1474	chr2	116555040	116555041	rs10195136	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.1	NR	rs10195136-?	NR	1E-7				Affymetrix [NR]	N
1474	chr2	116578040	116578041	rs114830967	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2q14.1	DPP10	rs114830967-T	0.06	4E-7	(Oxicams [M01AC])	2.07		Illumina [16500000] (imputed)	N
1474	chr2	116582386	116582387	rs12711836	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.1	NR	rs12711836-?	NR	2E-9				Affymetrix [NR]	N
1474	chr2	116625783	116625784	rs272043	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	2q14.1		rs272043-T	NR	4E-6		0.63		Illumina [NR] (imputed)	N
1475	chr2	116655794	116655795	rs272000	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q14.1	intergenic	rs272000-?	NR	9E-6	(count)			Perlegen [429981]	N
1475	chr2	116675307	116675308	rs17045259	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q14.1		rs17045259-A	NR	4E-6		4.6323495	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1475	chr2	116675307	116675308	rs17045259	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q14.1		rs17045259-A	NR	1E-6		4.8764424	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1475	chr2	116708739	116708740	rs12623145	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.1	DDX18	rs12623145-?	NR	3E-6	(adipic acid)	0.35503072	[0.21-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1476	chr2	116801804	116801805	rs1480496	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q14.1	NR	rs1480496-G	0.304	7E-9		0.00679509	[0.0045-0.0091] unit decrease	NR [9732723] (imputed)	N
1476	chr2	116829400	116829401	rs12623360	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	2q14.1	DPP10, DDX18	rs12623360-C	0.07	6E-6	(Men)	0.024764845	[0.014-0.035] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1476	chr2	116867637	116867638	rs7599272	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	2q14.1	NR	rs7599272-G		1E-6				Illumina [458525]	N
1476	chr2	116871426	116871427	rs77393244	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.1	NR	rs77393244-C	0.01742	3E-9	(AGXT)	5.237	NR unit increase	Illumina [1671387] (imputed)	N
1476	chr2	116909250	116909251	rs11123333	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	2q14.1	Intergenic	rs11123333-?		4E-6		1.3757051	[NR]	Affymetrix [492217] (imputed)	N
1477	chr2	117021298	117021299	rs72961133	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q14.1	NR	rs72961133-?	NR	6E-9				Illumina [7760689] (imputed)	N
1478	chr2	117078900	117078901	rs1505758	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	2q14.1	Intergenic	rs1505758-?		3E-6		1.3825521	[NR]	Affymetrix [492217] (imputed)	N
1478	chr2	117103657	117103658	rs62155764	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	2q14.1	DPP10, DDX18	rs62155764-A	0.342532	6E-7		0.365811	[0.22-0.51] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1480	chr2	117323072	117323073	rs10211032	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q14.1	ENSG00000271667	rs10211032-A	NR	3E-8		0.016958116	[0.011-0.023] unit increase	Affymetrix [NR]	N
1480	chr2	117370867	117370868	rs2920161	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q14.1	NR	rs2920161-T	0.473	6E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
1480	chr2	117372906	117372907	rs12619631	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	2q14.1	RP11-338I24.1	rs12619631-A	0.15	1E-6		1.59	[1.32-1.92]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1480	chr2	117401307	117401308	rs12151558	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q14.1	NR	rs12151558-?	NR	1E-7		5.264	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1481	chr2	117441495	117441496	rs11898439	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.1	NR	rs11898439-?	NR	5E-7				Affymetrix [NR]	N
1481	chr2	117543510	117543511	rs950251	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q14.1	Intergenic	rs950251-A	0.6265	2E-8	(MTAG)	0.0132	[0.0085-0.0179] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1482	chr2	117611524	117611525	rs78918150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.1		rs78918150-T	0.6227	4E-8		0.008	[0.0051-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1482	chr2	117611524	117611525	rs78918150	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.1	Intergenic	rs78918150-T	0.6227	5E-9	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1482	chr2	117647819	117647820	rs60262711	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q14.1	NR	rs60262711-T	NR	2E-8		5.645	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1482	chr2	117697405	117697406	rs6718450	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q14.1	NR	rs6718450-G	0.419483	1E-8		0.03628418	[0.024-0.049] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1482	chr2	117697405	117697406	rs6718450	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q14.1	Intergenic	rs6718450-C	0.3654	1E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1483	chr2	117793228	117793229	rs6741982	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		2q14.1	MTND2P21	rs6741982-A	0.961	9E-6		0.033	[0.019-0.047] dioptres decrease	NR [5901671] (imputed)	N
1483	chr2	117823415	117823416	rs79764963	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.1	Intergenic	rs79764963-T	0.989	4E-6	(AA)	0.159	NR unit increase	Illumina [NR] (imputed)	N
1485	chr2	118009951	118009952	rs333891	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q14.1	NR	rs333891-?	NR	4E-8				Illumina [7760689] (imputed)	N
1485	chr2	118071060	118071061	rs562386202	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q14.1	DDX18	rs562386202-G	6.0E-4	4E-8		3.2	[2.11-4.86]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1486	chr2	118137501	118137502	rs74424893	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2q14.1	NR	rs74424893-T	NR	5E-6	(African)	0.3535	[0.2-0.51] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1487	chr2	118228201	118228202	rs7607797	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	2q14.1	DDX18	rs7607797-?	NR	4E-8	(EA)	0.0127	[0.012-0.013] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
1487	chr2	118247713	118247714	rs12476173	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q14.1	DDX18	rs12476173-A	0.6383	4E-8		0.0115080355	[0.0074-0.0156] unit increase	Affymetrix [11514654] (imputed)	N
1487	chr2	118282229	118282230	rs1996277	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	2q14.1	DDX18, DPP10	rs1996277-?	0.02222	2E-19		12.26	[6.257-24.03]	Affymetrix [547296]	N
1487	chr2	118286122	118286123	rs369098800	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	2q14.1	DDX18	rs369098800-?	NR	9E-6				Illumina [up to 10295719] (imputed)	N
1487	chr2	118286122	118286123	rs369098800	31362332	Cheng Z	2019-07-30	Addict Biol	Genome-wide scan identifies opioid overdose risk locus close to MCOLN1.	Opioid overdose severity score	2,032 European ancestry individuals, 1,445 African American individuals	NA	2q14.1	DDX18	rs369098800-?	NR	5E-8	(AA)			Illumina [up to 10295719] (imputed)	N
1488	chr2	118402588	118402589	rs115946107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.1		rs115946107-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1488	chr2	118475543	118475544	rs982100	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q14.1	DDX18	rs982100-A	NR	4E-7	(between families)	5.08	unit increase	Affymetrix [up to 15107142] (imputed)	N
1489	chr2	118490900	118490901	rs150064803	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2q14.1	Intergenic	rs150064803-G	0.95	1E-6	(AA)			Illumina [NR] (imputed)	N
1489	chr2	118490900	118490901	rs150064803	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2q14.1	Intergenic	rs150064803-G	0.95	1E-6				Illumina [NR] (imputed)	N
1489	chr2	118536570	118536571	rs28892332	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q14.1	ENSG00000238207	rs28892332-T	NR	2E-8		5.66	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1489	chr2	118557082	118557083	rs17047429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.1	NR	rs17047429-C	NR	1E-16		0.0454	[0.035-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1489	chr2	118557082	118557083	rs17047429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q14.1	NR	rs17047429-C	NR	1E-17		0.0472	[0.036-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1489	chr2	118557082	118557083	rs17047429	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q14.1	NR	rs17047429-C	NR	3E-15		0.0435	[0.033-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1489	chr2	118599599	118599600	rs6729741	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Effector Memory CD4+ T cell Absolute Count	3,395 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q14.1		rs6729741-T	0.5459700000000001	1E-8		0.1485	[0.097-0.2] unit decrease	Illumina [18332267] (imputed)	N
1489	chr2	118599868	118599869	rs72834327	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2q14.1	NR	rs72834327-A	0.9179	1E-8	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1489	chr2	118606667	118606667	rs552277422	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.1		rs552277422-?	NR	5E-17		0.103014	[0.077-0.129] unit decrease	Affymetrix [20259828] (imputed)	N
1489	chr2	118616661	118616662	rs181429356	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2q14.1		rs181429356-C	0.989774	3E-7		0.0701327	[0.043-0.097] unit decrease	Illumina [13900000] (imputed)	N
1490	chr2	118627163	118627164	rs78358737	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q14.1	NR	rs78358737-T	0.028827	8E-10		0.1153513	[0.079-0.152] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1490	chr2	118627163	118627164	rs78358737	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q14.1	Intergenic	rs78358737-T	0.9549	6E-10		0.0425	[0.029-0.056] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1490	chr2	118644145	118644145	rs57779429	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.1		rs57779429-?	NR	3E-9		0.0179027	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1490	chr2	118648260	118648261	rs7569755	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2q14.1		rs7569755-?	NR	1E-9		0.0136395	[0.0092-0.0181] unit increase	NR [6912294] (imputed)	N
1490	chr2	118648260	118648261	rs7569755	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2q14.1		rs7569755-G	0.70942	6E-10		0.014	[0.01-0.018] unit increase	NR [7250403] (imputed)	N
1490	chr2	118648260	118648261	rs7569755	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2q14.1	NR	rs7569755-A	0.292374	8E-11		0.013923	[0.0097-0.0181] unit increase	Affymetrix [16668957] (imputed)	N
1490	chr2	118651763	118651764	rs2422052	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q14.1	Intergenic	rs2422052-G	NR	8E-6		0.0234461	[0.013-0.034] unit decrease	Illumina [13520550] (imputed)	N
1490	chr2	118687231	118687232	rs11888485	21775986	Hinch AG	2011-07-20	Nature	The landscape of recombination in African Americans.	Recombination measurement	30,033 African American individuals	NA	2q14.1	CCDC93	rs11888485-?	0.92	3E-8	(African-enrichment)			Affymetrix, Illumina [3058149] (imputed)	N
1490	chr2	118690406	118690407	rs72834381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.1	NR	rs72834381-G	NR	1E-10		0.05	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1490	chr2	118690406	118690407	rs72834381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q14.1	NR	rs72834381-G	NR	1E-10		0.0499	[0.035-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
1490	chr2	118690406	118690407	rs72834381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q14.1	NR	rs72834381-G	NR	3E-9		0.046	[0.031-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1490	chr2	118720177	118720178	rs60716475	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q14.1	Intergenic	rs60716475-T	0.0826	3E-8	(MTAG)	0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1490	chr2	118732830	118732831	rs17512204	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	2q14.1	CCDC93	rs17512204-?	0.072	4E-6				Illumina [308166]	N
1490	chr2	118743803	118743804	rs540747651	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q14.1	CCDC93	rs540747651-A	8.0E-4	1E-8		0.8716	[0.57-1.17] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1491	chr2	118788565	118788566	rs11686213	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q14.1	NR	rs11686213-?	NR	6E-6		4.52	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1491	chr2	118797741	118797742	rs72838078	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs72838078-G	NR	2E-11		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118797741	118797742	rs72838078	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs72838078-G	0.92	2E-10	(EA)	0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118797741	118797742	rs72838078	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs72838078-G	NR	2E-13		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118797741	118797742	rs72838078	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs72838078-G	0.92	1E-12	(EA)	0.062	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118814867	118814868	rs2276695	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Non-accommodative esotropia	826 European ancestry cases, 2,991 European ancestry controls	689 European ancestry cases, 1,448 European ancestry controls	2q14.1	LOC102723413	rs2276695-T	0.35	5E-6		1.29	NR	Illumina [6470615] (imputed)	N
1491	chr2	118834551	118834552	rs4848490	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.1		rs4848490-?	NR	9E-12		0.01715	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs10490626-G	NR	3E-11		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs10490626-G	0.92	3E-10	(EA)	0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs10490626-G	NR	4E-13		0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q14.1	NR	rs10490626-G	0.92	2E-12	(EA)	0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.1	INSIG2	rs10490626-A	0.08	2E-12		0.051	[NR] unit decrease	NR [NR] (imputed)	N
1491	chr2	118835840	118835841	rs10490626	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.1	INSIG2	rs10490626-A	0.08	6E-9		0.042	[NR] unit increase	NR [NR] (imputed)	N
1491	chr2	118836603	118836604	rs11679303	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.1	INSIG2	rs11679303-C	0.783363	5E-12		0.0159565	[0.011-0.02] unit increase	NR [13737936] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q14.1	CCDC93, INSIG2	rs55809639-?		1E-9		0.0699	[0.048-0.092] unit increase	Illumina [31500000] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	2E-12				Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	6E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	5E-16				Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	5E-10		1.841	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	1E-9	(EA)	1.884	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	2E-9		2.23	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118842800	118842801	rs55809639	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q14.1	CCDC93, INSIG2	rs55809639-A	NR	1E-9	(EA)	2.508	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1491	chr2	118845120	118845121	rs150474434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q14.1		rs150474434-A	NR	1E-19		0.0355	[0.028-0.043] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1491	chr2	118845120	118845121	rs150474434	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q14.1	INSIG2	rs150474434-G	0.898645	1E-23		0.0347466	[0.028-0.042] unit increase	Affymetrix [NR] (imputed)	N
1491	chr2	118845120	118845121	rs150474434	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q14.1	INSIG2	rs150474434-G	0.898599	3E-23		0.0342764	[0.028-0.041] unit increase	Affymetrix [NR] (imputed)	N
1491	chr2	118845120	118845121	rs150474434	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q14.1	INSIG2	rs150474434-?	NR	7E-22		0.0405	[0.033-0.048] unit decrease	Affymetrix [5701386] (imputed)	N
1491	chr2	118849849	118849850	rs12464355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q14.1		rs12464355-G	NR	2E-18		0.0336	[0.026-0.041] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1491	chr2	118849849	118849850	rs12464355	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q14.1	INSIG2	rs12464355-A	0.9087	2E-14		0.0384	[0.029-0.048] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1491	chr2	118859159	118859160	rs149369311	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q14.2	INSIG2	rs149369311-?	0.0914	4E-10		0.0312	[0.021-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1491	chr2	118859555	118859556	rs10490625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs10490625-A	NR	3E-21		0.0439	[0.035-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1491	chr2	118859555	118859556	rs10490625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q14.2	NR	rs10490625-A	NR	2E-23		0.0465	[0.037-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1491	chr2	118859555	118859556	rs10490625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q14.2	NR	rs10490625-A	NR	8E-19		0.0413	[0.032-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1492	chr2	118889228	118889229	rs6726538	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	2q14.2	intergenic	rs6726538-A	0.3871	3E-6		1.946	[1.471-2.573]	Affymetrix [556045]	N
1492	chr2	118892811	118892812	rs72839644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs72839644-G	NR	1E-11		0.0279	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr2	118892811	118892812	rs72839644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q14.2	NR	rs72839644-G	NR	1E-12		0.0291	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr2	118892811	118892812	rs72839644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q14.2	NR	rs72839644-G	NR	1E-11		0.0278	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1492	chr2	118895727	118895728	rs62164915	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs62164915-?	NR	8E-25		0.0241108	[0.019-0.029] unit decrease	Affymetrix [20259828] (imputed)	N
1492	chr2	118895727	118895728	rs62164915	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	INSIG2	rs62164915-A	0.727552	3E-9	(men)	0.0338767	[0.022-0.045] unit decrease	NR [17166351] (imputed)	N
1492	chr2	118895727	118895728	rs62164915	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	INSIG2	rs62164915-A	0.727185	5E-10		0.0226693	[0.015-0.03] unit decrease	NR [17166351] (imputed)	N
1492	chr2	118903714	118903715	rs62165280	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	INSIG2	rs62165280-G	0.79331	2E-24		0.0240693	[0.019-0.029] unit decrease	NR [13737936] (imputed)	N
1492	chr2	118903714	118903715	rs62165280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs62165280-?	NR	6E-29				NR [~ 8900000] (imputed)	N
1492	chr2	118903714	118903715	rs62165280	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs62165280-?	NR	6E-29		0.0276834	[0.023-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1492	chr2	118932472	118932473	rs6542432	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q14.2		rs6542432-G	0.99999	8E-6		4.179	[2.35-6.01] unit increase	Affymetrix [15580782] (imputed)	N
1492	chr2	118942882	118942883	rs4849682	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	2q14.2	AC093901.1	rs4849682-T	0.29	5E-7	(Hispanic, males)	0.03	[0.018-0.042] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1492	chr2	118993938	118993939	rs71422567	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	2q14.2		rs71422567-C	0.9886	8E-6		0.165	[0.092-0.238] unit decrease	Illumina [7778465] (imputed)	N
1492	chr2	119012018	119012019	rs114124763	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	LOC100506797	rs114124763-C	0.954586	8E-24		0.0491635	[0.04-0.059] unit decrease	NR [13737936] (imputed)	N
1492	chr2	119012018	119012019	rs114124763	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs114124763-?	NR	5E-101		0.102915	[0.093-0.113] unit decrease	Affymetrix [20259828] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	LOC100506797	rs1878526-G	0.782523	9E-71		0.0456913	[0.041-0.051] unit decrease	NR [13737936] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs1878526-?	NR	2E-182		0.0692616	[0.064-0.074] unit decrease	Affymetrix [20259828] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	LOC100506797	rs1878526-G	0.781278	3E-33	(men)	0.0719237	[0.06-0.084] unit decrease	NR [17166351] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	LOC100506797	rs1878526-G	0.780953	6E-64		0.0644874	[0.057-0.072] unit decrease	NR [17166351] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	LOC100506797	rs1878526-G	0.780669	1E-26	(women)	0.0553291	[0.044-0.066] unit decrease	NR [17166351] (imputed)	N
1493	chr2	119038597	119038598	rs1878526	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q14.2	INSIG2	rs1878526-A	0.22	1E-10		0.04	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1493	chr2	119043035	119043036	rs2422241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q14.2		rs2422241-A	NR	3E-8		0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1493	chr2	119045108	119045109	rs6728237	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q14.2		rs6728237-T	0.41	2E-43		13.81	z score increase	Affymetrix [9061022] (imputed)	N
1493	chr2	119045108	119045109	rs6728237	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q14.2		rs6728237-T	0.41	3E-30		11.43	z score increase	Affymetrix [9061022] (imputed)	N
1493	chr2	119045108	119045109	rs6728237	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q14.2	NR	rs6728237-T	0.4155	1E-17				NR [9056863] (imputed)	N
1493	chr2	119045108	119045109	rs6728237	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q14.2	POGK, TADA1, ILDR2, MAEL	rs6728237-?		1E-12				NR [7428630] (imputed)	N
1493	chr2	119046518	119046519	rs11692600	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	2q14.2		rs11692600-?	NR	1E-18				NR [9705931] (imputed)	N
1493	chr2	119046518	119046519	rs11692600	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 14)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q14.2		rs11692600-C	0.410490308	2E-12				Illumina [7417619] (imputed)	N
1493	chr2	119078583	119078584	rs144136543	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	LOC100506797	rs144136543-G	0.976565	2E-10		0.0382657	[0.027-0.05] unit increase	NR [13737936] (imputed)	N
1493	chr2	119078583	119078584	rs144136543	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs144136543-?	NR	1E-11		0.0452154	[0.032-0.058] unit increase	Affymetrix [20259828] (imputed)	N
1493	chr2	119085907	119085908	rs7562732	27723809	Matsunami K	2016-10-10	PLoS One	Genome-Wide Association Study Identifies ZNF354C Variants Associated with Depression from Interferon-Based Therapy for Chronic Hepatitis C.	Depression in response to interferon-based therapy in chronic hepatitis C	45 Japanese ancestry cases, 179 Japanese ancestry controls	40 Japanese ancestry cases, 120 Japanese ancestry controls	2q14.2	INSIG2	rs7562732-?	NR	2E-6		5.0	NR	Affymetrix [at least 551176] (imputed)	N
1494	chr2	119148337	119148338	rs62162151	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	2q14.2	NR	rs62162151-?		5E-6		0.019	[0.01-0.028] unit decrease	Illumina [7533529] (imputed)	N
1494	chr2	119154871	119154872	rs6542457	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Lumbar spine bone mineral density	23,699 European ancestry individuals, 1,526 whole genome sequenced European ancestry individuals, 3,273 whole exome sequenced European ancestry individuals	16,233 European ancestry individuals	2q14.2	EN1	rs6542457-C	0.05833	2E-9		0.086	[0.059-0.113] unit increase	Illumina [at least 10923926] (imputed)	N
1494	chr2	119161637	119161638	rs4073566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs4073566-?	NR	5E-179				NR [~ 8900000] (imputed)	N
1494	chr2	119161637	119161638	rs4073566	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs4073566-?	NR	3E-182		0.0693459	[0.064-0.074] unit increase	Affymetrix [20259828] (imputed)	N
1494	chr2	119163726	119163727	rs76588671	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	2q14.2	LOC101927709	rs76588671-C	0.16	2E-7		0.08	[0.041-0.119] unit increase	Illumina [11973598] (imputed)	N
1494	chr2	119166714	119166715	rs199727692	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs199727692-?	NR	1E-30		0.0844251	[0.069-0.1] unit decrease	Affymetrix [20259828] (imputed)	N
1494	chr2	119182535	119182535	rs10649332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q14.2		rs10649332-ATCT	NR	5E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1494	chr2	119182955	119182956	rs183424609	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	LOC101927709	rs183424609-T	0.997186	1E-11		0.11043	[0.079-0.142] unit increase	NR [13737936] (imputed)	N
1494	chr2	119182955	119182956	rs183424609	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs183424609-?	NR	4E-13		0.131376	[0.095-0.168] unit increase	Affymetrix [20259828] (imputed)	N
1494	chr2	119187508	119187509	rs78587638	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q14.2	INSIG2, EN1	rs78587638-G	0.842	2E-7		0.0370309	[0.023-0.051] unit decrease	Illumina [13520550] (imputed)	N
1494	chr2	119236495	119236496	rs4849701	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	LOC101927709	rs4849701-T	0.480922	9E-23		0.0192947	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1494	chr2	119236495	119236496	rs4849701	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs4849701-?	NR	5E-20		0.0189	[0.015-0.023] unit increase	Affymetrix [20259828] (imputed)	N
1494	chr2	119262815	119262816	rs115836882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs115836882-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1495	chr2	119285850	119285851	rs17008482	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.2	NR	rs17008482-?	NR	1E-13				Affymetrix [NR]	N
1495	chr2	119298886	119298887	rs1437683	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q14.2	NR	rs1437683-?	NR	7E-9				Illumina [7760689] (imputed)	N
1495	chr2	119321057	119321058	rs72826315	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2q14.2	NR	rs72826315-?	NR	9E-6				Illumina [NR] (imputed)	N
1495	chr2	119334703	119334704	rs148285156	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs148285156-A	0.9919	2E-13		0.3751	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1495	chr2	119334703	119334704	rs148285156	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs148285156-A	0.9917	6E-12	(European)	0.3686	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1495	chr2	119337158	119337159	rs115387174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q14.2	RP11-19E11.1	rs115387174-A	0.9637	5E-6		0.1051	[0.06-0.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1495	chr2	119337158	119337159	rs115387174	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q14.2	RP11-19E11.1	rs115387174-A	0.9637	5E-6		0.1051	[0.06-0.15] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1495	chr2	119395690	119395691	rs651477	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	2q14.2	EN1	rs651477-?	0.26	7E-6		1.38	[NR]	Illumina [551642]	N
1496	chr2	119414452	119414453	rs563697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA			rs563697-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1496	chr2	119418866	119418867	rs144104656	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q14.2	EN1	rs144104656-G		2E-7		8.04	[1.36-47.52]	Affymetrix, Illumina [NR] (imputed)	N
1496	chr2	119424744	119424745	rs332745	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q14.2		rs332745-A	0.15	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1496	chr2	119424744	119424745	rs332745	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q14.2	NR	rs332745-A	0.1414	5E-8				NR [9056863] (imputed)	N
1496	chr2	119440929	119440930	rs332108	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 14)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q14.2		rs332108-C	0.466222357	6E-12				Illumina [7417619] (imputed)	N
1496	chr2	119444228	119444229	rs332105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.2	RP11-19E11.1	rs332105-G	NR	3E-9		0.0169888	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1496	chr2	119444228	119444229	rs332105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.2	RP11-19E11.1	rs332105-G	NR	2E-9		0.0171613	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1496	chr2	119444228	119444229	rs332105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q14.2	NR	rs332105-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1496	chr2	119444228	119444229	rs332105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q14.2		rs332105-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1496	chr2	119444228	119444229	rs332105	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q14.2	NR	rs332105-G	0.44	6E-12		0.013	[0.0093-0.0167] unit increase	Affymetrix [2446094] (imputed)	N
1496	chr2	119444228	119444229	rs332105	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q14.2	NR	rs332105-G	0.44	5E-8				Affymetrix [2446094] (imputed)	N
1496	chr2	119444228	119444229	rs332105	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q14.2	NR	rs332105-A	0.5547	5E-14		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1496	chr2	119444228	119444229	rs332105	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q14.2	NA	rs332105-A	0.5544	1E-14		0.0139	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1496	chr2	119449739	119449740	rs114928225	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2q14.2	LOC101927709, EN1	rs114928225-A	0.010373336	7E-7		1.6501971	[1.353581526-2.011811428]	Illumina [10439017] (imputed)	N
1496	chr2	119462736	119462737	rs56138556	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	2q14.2		rs56138556-C	0.907885	3E-6		0.0219385	[0.013-0.031] unit decrease	Illumina [13900000] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	2q14.2		rs115242848-T	NR	3E-8		0.4877	[0.32-0.66] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	2q14.2	NR	rs115242848-T	0.988836040720343	7E-14		0.386695	[0.29-0.49] SD units decrease	Illumina [11603265] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs115242848-C	0.993039	5E-141		0.297503	[0.27-0.32] unit decrease	NR [13737936] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs115242848-?	NR	2E-289				NR [~ 8900000] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs115242848-?	NR	3E-282		0.421323	[0.4-0.45] unit decrease	Affymetrix [20259828] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs115242848-T	0.01	2E-14	(European)	0.3116	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs115242848-T	0.0098	2E-17		0.3236	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs115242848-C	0.992077	2E-41	(men)	0.398782	[0.34-0.46] unit decrease	NR [17166351] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs115242848-C	0.992011	6E-88		0.379359	[0.34-0.42] unit decrease	NR [17166351] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs115242848-C	0.991954	2E-44	(women)	0.368001	[0.32-0.42] unit decrease	NR [17166351] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (spine)	up to 20,132 European ancestry individuals	10,092 European and East Asian ancestry individuals	2q14.2	EN1	rs115242848-T	0.0122	1E-12		0.357	(0.259-0.455) unit increase	Illumina [19689642] (imputed)	N
1496	chr2	119507606	119507607	rs115242848	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	2q14.2	EN1	rs115242848-T	0.0122	8E-13		0.348	(0.253-0.444) unit increase	Illumina [19689642] (imputed)	N
1496	chr2	119510493	119510493	rs560102628	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs560102628-?	NR	6E-257		0.377157	[0.35-0.4] unit decrease	Affymetrix [20259828] (imputed)	N
1496	chr2	119511000	119511001	rs560152536	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs560152536-C	0.994583	9E-11		0.0732443	[0.051-0.095] unit decrease	NR [13737936] (imputed)	N
1496	chr2	119512335	119512336	rs72834455	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q14.2	NR	rs72834455-?	NR	7E-7		0.0603	[0.036-0.084] unit increase	Illumina [at least 560000] (imputed)	N
1496	chr2	119527122	119527123	rs10199437	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs10199437-G	0.0589507	4E-52		0.0595206	[0.052-0.067] unit increase	NR [13737936] (imputed)	N
1496	chr2	119527122	119527123	rs10199437	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs10199437-?	NR	2E-37		0.0553334	[0.047-0.064] unit increase	Affymetrix [20259828] (imputed)	N
1496	chr2	119527122	119527123	rs10199437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs10199437-G	0.0589237	2E-9	(women)	0.058096	[0.039-0.077] unit increase	NR [17166351] (imputed)	N
1496	chr2	119527122	119527123	rs10199437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs10199437-G	0.0586406	2E-17		0.0608513	[0.047-0.075] unit increase	NR [17166351] (imputed)	N
1496	chr2	119527122	119527123	rs10199437	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs10199437-G	0.0583165	2E-9	(men)	0.0633469	[0.042-0.085] unit increase	NR [17166351] (imputed)	N
1496	chr2	119527879	119527880	rs896235	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q14.2	EN1	rs896235-C	NR	6E-6		3.533601	[2.06-5.01] unit decrease	Illumina [> 6200000] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	2q14.2	NR	rs55983207-?	0.936223909258842	1E-9		0.13764301	[0.093-0.182] SD units decrease	Illumina [11603265] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs55983207-T	0.969333	4E-41		0.0699224	[0.06-0.08] unit decrease	NR [13737936] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs55983207-?	NR	2E-14		0.0415313	[0.03-0.053] unit decrease	Affymetrix [20259828] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2q14.2	EN1	rs55983207-T	0.951918	3E-9		0.107	[0.072-0.142] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	2q14.2	NR	rs55983207-T	0.9474	3E-8		0.1409	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs55983207-T	0.96019	7E-8		0.047191	[0.029-0.065] unit decrease	NR [17166351] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	26733130	Styrkarsdottir U	2016-01-06	Nat Commun	Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.	Bone mineral density (hip)	up to 20,162 European ancestry individuals	10,037 European and East Asian ancestry individuals	2q14.2	EN1	rs55983207-C	0.0216	3E-10		0.219	[0.22-0.22] unit increase	Illumina [19689642] (imputed)	N
1496	chr2	119529828	119529829	rs55983207	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Femoral neck bone mineral density	26,320 European ancestry individuals, 2,868 whole genome sequenced European ancestry individuals, 3,547 whole exome sequenced European ancestry individuals	17,253 European ancestry individuals	2q14.2	EN1	rs55983207-C	0.042	7E-15		0.122	[0.091-0.153] unit increase	Illumina [at least 10916125] (imputed)	N
1497	chr2	119538981	119538982	rs6716872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q14.2		rs6716872-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1497	chr2	119541380	119541381	rs11694441	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	2q14.2	INSIG2, EN1	rs11694441-?	NR	8E-10		0.037	[0.025-0.049] unit increase	Illumina [12039491] (imputed)	N
1497	chr2	119541787	119541788	rs6542479	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q14.2	NR	rs6542479-C	0.3482	4E-12		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1497	chr2	119545993	119545994	rs11692564	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Lumbar spine bone mineral density	23,699 European ancestry individuals, 1,526 whole genome sequenced European ancestry individuals, 3,273 whole exome sequenced European ancestry individuals	16,233 European ancestry individuals	2q14.2	EN1	rs11692564-T	0.016	2E-14		0.22	[0.16-0.28] unit increase	Illumina [at least 10923926] (imputed)	N
1497	chr2	119545993	119545994	rs11692564	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Femoral neck bone mineral density	26,320 European ancestry individuals, 2,868 whole genome sequenced European ancestry individuals, 3,547 whole exome sequenced European ancestry individuals	17,253 European ancestry individuals	2q14.2	EN1	rs11692564-T	0.016	2E-6		0.12	[0.061-0.179] unit increase	Illumina [at least 10916125] (imputed)	N
1497	chr2	119553021	119553022	rs547130337	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs547130337-?	NR	2E-19		0.19316	[0.15-0.24] unit decrease	Affymetrix [20259828] (imputed)	N
1497	chr2	119555874	119555875	rs141033892	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q14.2	LINC01956	rs141033892-A	0.0504	2E-9		0.0261	[0.017-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1497	chr2	119555975	119555976	rs13035328	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q14.2	EN1	rs13035328-?	NR	2E-12		1.0637165	NR	Affymetrix [9154080] (imputed)	N
1497	chr2	119556451	119556451	rs559166558	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01956	rs559166558-?	NR	9E-9		1.58982	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1497	chr2	119569204	119569205	rs116654234	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01956	rs116654234-?	NR	4E-10	(male)	1.90383	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1497	chr2	119587823	119587824	rs138724718	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Stress urinary incontinence	2,072 European ancestry cases, 6,907 European ancestry controls	1,321 European ancestry cases, 2,748 European ancestry controls	2q14.2		rs138724718-A	NR	3E-9		1.85	[1.47-2.35]	Illumina [9700000] (imputed)	N
1497	chr2	119590950	119590951	rs62159864	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs62159864-?	NR	4E-135		0.0567063	[0.052-0.061] unit decrease	Affymetrix [20259828] (imputed)	N
1497	chr2	119590950	119590951	rs62159864	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs62159864-T	0.729942	3E-27	(women)	0.0522285	[0.042-0.062] unit decrease	NR [17166351] (imputed)	N
1497	chr2	119590950	119590951	rs62159864	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs62159864-T	0.729573	3E-46		0.0520419	[0.045-0.059] unit decrease	NR [17166351] (imputed)	N
1497	chr2	119590950	119590951	rs62159864	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q14.2	EN1	rs62159864-T	0.72915	2E-20	(men)	0.0546765	[0.043-0.066] unit decrease	NR [17166351] (imputed)	N
1497	chr2	119601871	119601872	rs4144782	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs4144782-?	NR	7E-127		0.0499582	[0.046-0.054] unit decrease	Affymetrix [20259828] (imputed)	N
1497	chr2	119608581	119608582	rs3754855	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs3754855-A	0.603386	4E-112		0.0442916	[0.04-0.048] unit decrease	NR [13737936] (imputed)	N
1497	chr2	119610405	119610406	rs144832051	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	2q14.2	NR	rs144832051-?	0.968836486339569	2E-7		0.16121407	[0.1-0.22] SD units decrease	Illumina [11603265] (imputed)	N
1497	chr2	119610405	119610406	rs144832051	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.2	EN1	rs144832051-C	0.978343	8E-28		0.0767861	[0.063-0.091] unit decrease	NR [13737936] (imputed)	N
1497	chr2	119610405	119610406	rs144832051	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs144832051-?	NR	1E-186		0.20272	[0.19-0.22] unit decrease	Affymetrix [20259828] (imputed)	N
1497	chr2	119610405	119610406	rs144832051	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs144832051-T	0.0173	4E-13		0.2181	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1497	chr2	119611025	119611026	rs62159867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs62159867-?	NR	3E-137				NR [~ 8900000] (imputed)	N
1497	chr2	119613443	119613444	rs188303909	26367794	Zheng HF	2015-10-01	Nature	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Lumbar spine bone mineral density	23,699 European ancestry individuals, 1,526 whole genome sequenced European ancestry individuals, 3,273 whole exome sequenced European ancestry individuals	16,233 European ancestry individuals	2q14.2	EN1	rs188303909-T	0.02	1E-9		0.16	[0.11-0.21] unit increase	Illumina [at least 10923926] (imputed)	N
1497	chr2	119618296	119618301	rs537474121	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (velocity of sound)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	2q14.2	EN1	rs537474121--	0.02	2E-7		0.25	[0.15-0.35] unit increase	Illumina [11973598] (imputed)	N
1497	chr2	119620958	119620958	rs772466360	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs772466360-?	NR	5E-39		0.0327844	[0.028-0.038] unit increase	Affymetrix [20259828] (imputed)	N
1497	chr2	119632251	119632252	rs12612325	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q14.2	NR	rs12612325-A	0.2011	3E-12	(European)	0.06	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1497	chr2	119660942	119660943	rs114962105	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q14.2	EN1, MARCO	rs114962105-A	0.98	4E-8	(African)	178.48	[114.9-242.06] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1497	chr2	119660942	119660943	rs114962105	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q14.2		rs114962105-?	NR	3E-6	(African)	133.05	[76.86-189.24] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1497	chr2	119662627	119662628	rs10460475	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	2q14.2	MARCO	rs10460475-G	0.0936997	7E-9		0.08992356	[0.059-0.12] unit increase	Affymetrix [7288503] (imputed)	N
1498	chr2	119715238	119715239	rs147200332	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	2q14.2		rs147200332-?	NR	3E-6		0.4567444	[0.27-0.65] unit increase	Illumina [9906551] (imputed)	N
1498	chr2	119715238	119715239	rs147200332	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2q14.2		rs147200332-?	NR	4E-6		0.469868	[0.27-0.67] unit increase	Illumina [9901720] (imputed)	N
1498	chr2	119748248	119748249	rs200400638	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.2		rs200400638-?	NR	5E-39		0.271814	[0.23-0.31] unit decrease	Affymetrix [20259828] (imputed)	N
1498	chr2	119752449	119752450	rs77631110	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q14.2	MARCO	rs77631110-A	0.984513	7E-11		0.0526404	[0.037-0.068] unit decrease	Affymetrix [NR] (imputed)	N
1498	chr2	119757790	119757791	rs9752592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q14.2		rs9752592-T	NR	2E-9		0.0568	[0.038-0.075] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1498	chr2	119767025	119767026	rs77998815	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q14.2	NR	rs77998815-C	NR	2E-10		0.0633	[0.044-0.083] unit increase	Affymetrix [9000000] (imputed)	N
1498	chr2	119787152	119787153	rs78737026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs78737026-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1499	chr2	119821278	119821279	rs12471476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.2	C1QL2	rs12471476-?	NR	7E-6	(TAG 54:6)	0.15366232	[0.086-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
1499	chr2	119845316	119845317	rs17189298	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q14.2	intergenic	rs17189298-A	NR	3E-7	(Controls)			Illumina [498205]	N
1499	chr2	119924606	119924607	rs146426342	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection in antibiotics-users	587 European ancestry cases, 3,166 European ancestry controls	NA	2q14.2	RN7SL468P	rs146426342-G	0.013	8E-6		2.54	[1.78-3.48]	Illumina [64973696] (imputed)	N
1500	chr2	119934854	119934855	rs114502255	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	2q14.2	NR	rs114502255-?	NR	8E-8		0.489441	[0.31-0.67] unit decrease	NR [13958389] (imputed)	N
1500	chr2	119936682	119936683	rs12623976	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	2q14.2	C1QL2	rs12623976-A	NR	8E-6		4.469	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1500	chr2	119942095	119942096	rs7601541	33203692	Labadie JD	2020-11-17	Cancer Epidemiol Biomarkers Prev	Genetic predictors of severe skin toxicity in stage III colon cancer patients treated with cetuximab: NCCTG N0147 (Alliance).	Severe skin toxicity response to cetuximab in stage 3 colon cancer	216 European ancestry cases, 12 African ancestry cases, 9 Asian ancestry cases, 3 Oceanian ancestry cases, 3 cases, 819 European ancestry controls, 74 African ancestry controls, 51 Asian ancestry controls, 4 American Indian ancestry controls, 3 Oceanian ancestry controls, 15 controls	NA	2q14.2	NR	rs7601541-?	NR	2E-8		6.78	[3.49-13.15]	Illumina [10574903] (imputed)	N
1500	chr2	119972905	119972906	rs6735649	31003110	Kim S	2019-04-08	J Affect Disord	Heritability estimates of individual psychological distress symptoms from genetic variation.	Psychological wellbeing index 1 (lack of subjective wellbeing and health)	up to 12,680 Korean ancestry individuals	NA	2q14.2	NR	rs6735649-T	0.72	2E-8		0.1678	[0.11-0.23] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1500	chr2	119972905	119972906	rs6735649	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	2q14.2		rs6735649-T	0.66	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1500	chr2	119984329	119984330	rs74880745	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q14.2	STEAP3	rs74880745-G	0.0175724984246824	4E-6	(G_Prevotella_RNT)	0.495527	[0.28-0.71] unit increase	Illumina [7711310] (imputed)	N
1500	chr2	120001117	120001118	rs13027293	31231134	Laskar RS	2019-06-23	Eur J Hum Genet	Sex specific associations in genome wide association analysis of renal cell carcinoma.	Renal cell carcinoma x sex interaction	3,227 European ancestry male cases, 1,992 European ancestry female cases, 4,916 European ancestry male controls, 3,095 European ancestry female controls	2,261 European ancestry male cases, 5,852 European ancestry male controls, 1,399 European ancestry female cases, 1,575 European ancestry female controls	2q14.2	STEAP3	rs13027293-?	NR	1E-6				Illumina [~ 6000000] (imputed)	N
1500	chr2	120023691	120023692	rs72840936	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q14.2	Intergenic	rs72840936-C	0.018	5E-7	(liability model)	0.32	[0.2-0.44] unit increase	NR [19725427] (imputed)	N
1500	chr2	120023691	120023692	rs72840936	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	2q14.2	STEAP3	rs72840936-?	NR	3E-6	(EA)			Illumina [37426733] (imputed)	N
1501	chr2	120135490	120135491	rs11898177	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.2	NR	rs11898177-C	0.2892	7E-11	(DBI)	0.1499	NR unit increase	Illumina [1671387] (imputed)	N
1501	chr2	120145654	120145655	rs1374313	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q14.2	DBI	rs1374313-G	0.343	9E-7	(Diet fat )	0.03	[NR] g/d increase	Illumina [899892]	N
1502	chr2	120231069	120231070	rs3731600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q14.2		rs3731600-G	0.048807597	5E-10		0.13583651	[0.093-0.179] unit decrease	Illumina [13429769] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q14.2		rs3731600-G	NR	5E-10		0.1358	[0.093-0.179] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q14.2		rs3731600-G	0.047206382	2E-8		0.13230403	[0.086-0.178] unit decrease	Illumina [13134967] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q14.2		rs3731600-G	NR	2E-8		0.1323	[0.086-0.178] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2q14.2	NR	rs3731600-G	0.0462	2E-8		0.1234	[0.08-0.167] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2q14.2		rs3731600-G	0.047934387	3E-8		0.8976583	[0.863912232-0.932722542]	Illumina [8919992] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2q14.2	SCTR	rs3731600-C	0.968	7E-9		1.13	[1.08-1.18]	Affymetrix, Illumina [11800000] (imputed)	N
1502	chr2	120231069	120231070	rs3731600	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2q14.2	SCTR	rs3731600-C	0.95	2E-8		1.13	1.08-1.18	Illumina [12557761] (imputed)	N
1502	chr2	120321816	120321817	rs2587695	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2q14.2	MGC33657	rs2587695-?	NR	3E-7				Affymetrix [504219]	N
1502	chr2	120323490	120323491	rs75580062	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q14.2	SCTR, PCDP1	rs75580062-T	0.0257	2E-6		1.18994	[1.12-1.26]	NR [9372253] (imputed)	N
1503	chr2	120328863	120328864	rs139257032	25241909	Lee JH	2014-09-21	Respir Res	Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease.	Chronic bronchitis and chronic obstructive pulmonary disease	up to 1,662 European ancestry cases, up to 3,520 European ancestry smoker controls, 182 African American cases, 1,749 African American smoker controls	NA	2q14.2	PCDP1	rs139257032-T	0.02	3E-7	(EA)	3.35	[2.12-5.30]	Illumina [NR] (imputed)	N
1503	chr2	120443013	120443014	rs2177095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q14.2	Intergenic	rs2177095-T	0.1601	4E-13	(MTAG)	0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1503	chr2	120443013	120443014	rs2177095	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.2	Intergenic	rs2177095-T	0.1599	6E-12	(MTAG)	0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1503	chr2	120443664	120443665	rs7571822	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q14.2	Intergenic	rs7571822-T	0.16	2E-13		0.0196	[0.014-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1504	chr2	120496518	120496519	rs17661862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q14.2		rs17661862-G	0.055964	1E-9		0.029502174	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1504	chr2	120513132	120513133	rs13401620	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2q14.2	EPB41L5	rs13401620-A	0.224	2E-6		0.095	[0.056-0.134] cup size decrease	Illumina [7422970] (imputed)	N
1504	chr2	120540223	120540224	rs12990769	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2q14.2		rs12990769-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1505	chr2	120680217	120680218	rs77713896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q14.2		rs77713896-C	NR	2E-10		0.0313	[0.022-0.041] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1505	chr2	120680217	120680218	rs77713896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q14.2	PTPN4	rs77713896-C	0.061094	3E-16		0.03766278	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1505	chr2	120680217	120680218	rs77713896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs77713896-C	0.0591655	8E-16				Affymetrix, Illumina [23472807] (imputed)	N
1505	chr2	120680217	120680218	rs77713896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q14.2	NR	rs77713896-C	0.061285	2E-18		0.034601	[0.027-0.042] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1505	chr2	120682628	120682629	rs66532914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q14.2		rs66532914-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1506	chr2	120745020	120745021	rs13011058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.2		rs13011058-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1506	chr2	120748570	120748571	rs11685222	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		2q14.2	intergenic	rs11685222-?	NR	4E-6		1.98	[NR]	Illumina [up to 810372] (imputed)	N
1506	chr2	120776741	120776742	rs141466977	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	2q14.2		rs141466977-?	NR	4E-10		0.0906076	[0.063-0.118] unit increase	NR [9800000] (imputed)	N
1506	chr2	120818804	120818804	rs558199115	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q14.2	EPB41L5	rs558199115-AT	0.2126	1E-9		0.02753467	[0.019-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1506	chr2	120819301	120819302	rs769037396	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q14.2	NR	rs769037396-?	NR	6E-6		4.524	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q14.2		rs28930677-T	NR	2E-11		0.0325	[0.023-0.042] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q14.2		rs28930677-T	NR	5E-9		0.0262	[0.017-0.035] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q14.2		rs28930677-T	NR	2E-10		0.0292	[0.02-0.038] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	NR	3E-14		0.0431	[0.032-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	NR	1E-15		0.0453	[0.034-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	NR	1E-39		0.0746	[0.063-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	NR	2E-17		0.0483	[0.037-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q14.2	EPB41L5	rs28930677-T	0.046659	1E-15		0.04164547	[0.031-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q14.2	EPB41L5	rs28930677-T	0.046661	6E-17		0.043759108	[0.034-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q14.2	EPB41L5	rs28930677-T	0.046655	1E-15		0.04179472	[0.032-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.04475	1E-18				Affymetrix, Illumina [24332387] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.046071	2E-21		0.042044	[0.033-0.051] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.0446723	7E-19				Affymetrix, Illumina [24653286] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.045953	1E-21		0.042509	[0.034-0.051] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.0447017	2E-18				Affymetrix, Illumina [24558453] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q14.2	NR	rs28930677-T	0.045988	4E-21		0.041918	[0.033-0.051] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q14.2	EPB41L5	rs28930677-T		1E-12		0.038	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1506	chr2	120848048	120848049	rs28930677	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q14.2		rs28930677-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1507	chr2	120921167	120921168	rs34255923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q14.2		rs34255923-G	NR	1E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1507	chr2	120921167	120921168	rs34255923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q14.2	NR	rs34255923-G	NR	8E-10		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1507	chr2	120936491	120936492	rs140179699	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q14.2	EPB41L5	rs140179699-A	0.9537	2E-13		0.0073	[0.0051-0.0095] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1507	chr2	120936770	120936771	rs17624445	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.2	RALB	rs17624445-?	NR	7E-6	(glucuronate)	0.37889582	[0.21-0.54] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1508	chr2	120986871	120986872	rs6542573	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	2q14.2	NA	rs6542573-T	0.3864	9E-6		0.2888	[0.1641-0.508]	Illumina [243345]	N
1508	chr2	120994532	120994533	rs10199109	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q14.2	RALB	rs10199109-T	0.6907	2E-18		0.03451906	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1508	chr2	120997868	120997869	rs6746072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q14.2	RALB	rs6746072-T	0.633074	4E-11		0.015647586	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q14.2	RALB	rs4849845-A	0.688235	4E-50		0.036236566	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q14.2	RALB	rs4849845-A	0.688228	7E-71		0.043081477	[0.038-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs4849845-A	0.631739	2E-61				Affymetrix, Illumina [24588908] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs4849845-G	0.31057	6E-80				Affymetrix, Illumina [17210439] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q14.2	NR	rs4849845-G	0.310725	2E-82		0.039906	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1508	chr2	121013168	121013169	rs4849845	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q14.2	RALB	rs4849845-A	0.6894	1E-25		0.0409393	[0.033-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1508	chr2	121013509	121013509	rs11271580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q14.2		rs11271580-CTATGTGATTTTACTGAG	NR	4E-21		0.0221	[0.018-0.027] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1508	chr2	121016473	121016474	rs4549095	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q14.2		rs4549095-A	0.3	2E-17				Affymetrix [10369434] (imputed)	N
1508	chr2	121016473	121016474	rs4549095	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q14.2	RALB	rs4549095-A	0.3007	2E-9		0.0915	[0.062-0.121] unit increase	Affymetrix [~ 11900000] (imputed)	N
1508	chr2	121017317	121017318	rs6542581	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q14.2		rs6542581-A	0.31	3E-23				Affymetrix [10369434] (imputed)	N
1508	chr2	121021780	121021781	rs10198758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q14.2		rs10198758-C	NR	8E-37		0.0317	[0.027-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1508	chr2	121028163	121028164	rs576862122	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIPK2	5,341 Icelandic ancestry individuals	NA	2q14.2		rs576862122-G	0.01185	4E-13		0.152069	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1508	chr2	121041313	121041314	rs3931841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q14.2	RALB	rs3931841-G	0.681964	2E-13		0.017891532	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1508	chr2	121048711	121048712	rs17050072	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q14.2	RALB	rs17050072-T	0.31	8E-9		0.0873	[0.058-0.117] unit increase	Affymetrix [~ 11900000] (imputed)	N
1508	chr2	121052267	121052268	rs1137385	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q14.2	NR	rs1137385-T	0.691179	2E-61		0.032901	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1508	chr2	121070728	121070729	rs11673819	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q14.2	NR	rs11673819-T	0.7035	8E-19		0.002192	[0.0017-0.0027] unit decrease	Affymetrix [NR] (imputed)	N
1508	chr2	121073862	121073863	rs13019313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q14.2	Intergenic	rs13019313-A	0.5982	2E-9	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1508	chr2	121073862	121073863	rs13019313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q14.2	Intergenic	rs13019313-G	0.4018	5E-8		0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1508	chr2	121073862	121073863	rs13019313	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.2	Intergenic	rs13019313-A	0.5981	7E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1508	chr2	121081602	121081603	rs114153232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q14.2		rs114153232-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1508	chr2	121082238	121082239	rs11892488	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.2	NR	rs11892488-T	0.05401	6E-9	(CRK)	0.003488	NR unit decrease	Illumina [1671387] (imputed)	N
1508	chr2	121088181	121088182	rs11903787	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q14.2	INHBB	rs11903787-?	0.75	9E-7		1.1111112	[1.06-1.16]	Illumina [10909381] (imputed)	N
1508	chr2	121088181	121088182	rs11903787	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	2q14.2	INHBB	rs11903787-?	0.74	7E-10		1.098901	[1.04-1.15] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
1508	chr2	121089730	121089731	rs17625845	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	2q14.2	INHBB, RALB	rs17625845-?	NR	6E-18		0.14	[0.171-0.108] unit decrease	Illumina [12039487] (imputed)	N
1508	chr2	121089730	121089731	rs17625845	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2q14.2	INHBB	rs17625845-C	.205	5E-10		0.125	[.086-.164] cup size increase	Illumina [7422970] (imputed)	N
1508	chr2	121100168	121100169	rs10204633	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2q14.2		rs10204633-G	NR	8E-9		0.1097	[0.072-0.147] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1508	chr2	121103597	121103598	rs111595856	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q14.2	NR	rs111595856-T	NR	2E-15		1.084	[1.06-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1508	chr2	121103597	121103598	rs111595856	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2q14.2	NR	rs111595856-T	0.192	6E-9		1.112	[1.07-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
1509	chr2	121124075	121124076	rs11887035	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q14.2		rs11887035-T	0.070313658	3E-6		0.03141427	[0.018-0.045] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1509	chr2	121146500	121146501	rs72827480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2q14.2		rs72827480-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1509	chr2	121159204	121159205	rs10164550	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2q14.2		rs10164550-A	NR	2E-10		0.021835294	[0.015-0.029] years increase	NR [7400000] (imputed)	N
1509	chr2	121179160	121179161	rs117515012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q14.2		rs117515012-A	0.043741543	2E-8		0.2727515	[0.18-0.37] unit increase	Illumina [13401000] (imputed)	N
1509	chr2	121179160	121179161	rs117515012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q14.2		rs117515012-A	NR	2E-8		0.2728	[0.18-0.37] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
1509	chr2	121195180	121195181	rs7581710	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	2q14.2	INHBB	rs7581710-?	NR	2E-7	(WHR)			Illumina [~ 550000]	N
1509	chr2	121222494	121222495	rs12992152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q14.2	LINC01101	rs12992152-T	0.74835	2E-11		0.017325394	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr2	121222494	121222495	rs12992152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q14.2	LINC01101	rs12992152-T	0.74836	3E-9		0.015336453	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1509	chr2	121239359	121239360	rs4848599	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q14.2	NR	rs4848599-C	0.8845	2E-20	(EA)	0.0933	[0.074-0.113] unit increase	Illumina [~ 11800000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q14.2		rs4849887-T	NR	2E-25		0.91	[0.9-0.93]	Affymetrix, Illumina [NR] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q14.2	intergenic	rs4849887-C	0.9	7E-20	(EA)	1.098901	[1.06-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q14.2	NR	rs4849887-C	0.9	4E-9		1.1764705	[1.11-1.23] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	2q14.2	NR	rs4849887-C	0.9	5E-9		1.098901	[1.06-1.14]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2q14.2	NR	rs4849887-C	0.9	2E-11		1.098901	[1.06-1.14]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q14.2	intergenic	rs4849887-C	0.902	4E-11		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1510	chr2	121245121	121245122	rs4849887	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2q14.2	INHBB, GLI2, LOC84931	rs4849887-T	0.113	3E-11		0.166	[0.12-0.22] cup size increase	Illumina [7422970] (imputed)	N
1510	chr2	121245612	121245613	rs12616849	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q14.2		rs12616849-C	NR	3E-9		1.1220826	NR	Affymetrix [7846216] (imputed)	N
1510	chr2	121245995	121245996	rs11123556	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	2q14.2		rs11123556-?	NR	9E-15		0.075	[0.055-0.095] unit decrease	Affymetrix [9906178] (imputed)	N
1510	chr2	121246567	121246568	rs10179592	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q14.2		rs10179592-C	NR	1E-8		1.0952903	[1.06-1.13]	Affymetrix [7846216] (imputed)	N
1510	chr2	121282629	121282630	rs17050244	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	2q14.2	INHBB, GLI2	rs17050244-?	0.11	5E-7		1.28	[1.16-1.41]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1510	chr2	121290889	121290890	rs1404610	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	2q14.2		rs1404610-G	0.012	5E-10		3.74	[2.47-5.67]	Illumina [9962324] (imputed)	N
1510	chr2	121301910	121301911	rs6721654	23326517	Holliday EG	2013-01-11	PLoS One	Insights into the genetic architecture of early stage age-related macular degeneration: a genome-wide association study meta-analysis.	Age-related macular degeneration	3,772 European ancestry cases, 16,033 European ancestry controls	264 Asian ancestry cases, 3,926 Asian ancestry controls	2q14.2	INHBB, GLI2	rs6721654-T	0.08	7E-6	(EA)	1.26	[1.14-1.40]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1510	chr2	121304547	121304548	rs4849902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.2	AC073257.2	rs4849902-C	NR	3E-8		0.0161902	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1510	chr2	121304547	121304548	rs4849902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.2	AC073257.2	rs4849902-C	NR	2E-8		0.0163542	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1510	chr2	121305603	121305604	rs11122800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q14.2	NR	rs11122800-G	NR	7E-15		0.026	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr2	121305603	121305604	rs11122800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs11122800-G	NR	7E-11		0.0217	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr2	121305770	121305771	rs2311597	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.2	NR	rs2311597-A	0.576308	1E-8		0.0111646	[0.0073-0.015] unit increase	NR [NR]	N
1510	chr2	121306439	121306440	rs17050272	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q14.2		rs17050272-G	0.590631	2E-11		0.024258	[0.017-0.031] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein INHBB	5,364 Icelandic ancestry individuals	NA	2q14.2		rs17050272-A	0.4112	7E-81		0.338303	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q14.2		rs17050272-A	NR	7E-16		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q14.2		rs17050272-A	NR	2E-34		0.0218	[0.018-0.025] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q14.2		rs17050272-A	NR	2E-29		0.0182	[0.015-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q14.2		rs17050272-A	NR	4E-22		0.0207	[0.017-0.025] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q14.2		rs17050272-A	NR	8E-22		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q14.2	LINC01101	rs17050272-G	0.590419	2E-19		0.004522	[0.0035-0.0055] unit decrease	Affymetrix [13995440] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q14.2	NR	rs17050272-A	0.41	5E-42		0.0256	[0.022-0.029] unit increase	NR [NR]	N
1510	chr2	121306439	121306440	rs17050272	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q14.2	LINC01101	rs17050272-G	0.590728	3E-22		0.0205207	[0.016-0.025] unit increase	Affymetrix [NR] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q14.2	LINC01101	rs17050272-G	0.590744	5E-31		0.0243835	[0.02-0.029] unit increase	Affymetrix [NR] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q14.2	CLASP1	rs17050272-?	NR	2E-24		0.0262	[0.022-0.031] unit decrease	Affymetrix [5701386] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q14.2	NR	rs17050272-A	0.40984200000000004	1E-10		0.00664821	[0.0044-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q14.2	NR	rs17050272-A	0.40984200000000004	7E-8		0.00611368	[0.0037-0.0086] unit increase	Affymetrix [16582614] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	2q14.2	INHBB	rs17050272-G		6E-11		0.037	[0.025-0.049] mg/dl decrease	NR [NR] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q14.2	LINC01101	rs17050272-A	0.4301	1E-17		0.0276	[0.021-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q14.2	LINC01101	rs17050272-A	0.421	2E-15		0.031806	[0.024-0.04] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q14.2	NR	rs17050272-A	0.4411	2E-8	(men)	0.0285	[0.019-0.038] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q14.2	NR	rs17050272-A	0.4402	1E-6	(women)	0.0224	[0.013-0.031] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q14.2	LINC01101	rs17050272-A	0.4351	1E-17		0.0022	[0.0016-0.0028] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q14.2	LINC01101	rs17050272-A	0.4351	9E-7		0.0034	[0.002-0.0048] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q14.2	GLI2, AC073257.2	rs17050272-G	0.5698	2E-8		5.639	NR z score increase	Illumina [26237160] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2q14.2	LINC01101, GLI2	rs17050272-A	0.448	1E-9	(EA)	0.026428571	[0.018-0.035] unit increase	Illumina [1986983] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q14.2	intergenic	rs17050272-A	0.389	1E-10		0.0181	[0.013-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q14.2	AC073257.2	rs17050272-A	0.3889	2E-14		0.0216	[0.016-0.027] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2q14.2	GLI2	rs17050272-A	0.43	1E-7	(EA)	0.0043	[0.0027-0.0059] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1510	chr2	121306439	121306440	rs17050272	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q14.2	INHBB	rs17050272-A	0.43	2E-10		0.035	[0.023-0.047] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1510	chr2	121306757	121306758	rs72833852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q14.2		rs72833852-C	NR	4E-10		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1510	chr2	121308659	121308660	rs7578604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q14.2	AC073257.1	rs7578604-T	NR	2E-10		0.0206623	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1510	chr2	121308659	121308660	rs7578604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q14.2	AC073257.1	rs7578604-T	NR	2E-10		0.0204576	[0.014-0.027] unit increase	Affymetrix [319769] (imputed)	N
1510	chr2	121309230	121309231	rs954244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q14.2		rs954244-G	NR	3E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1510	chr2	121309230	121309231	rs954244	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q14.2	LINC01101	rs954244-C	0.745361	2E-11		0.0152939	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1510	chr2	121309230	121309231	rs954244	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q14.2	NR	rs954244-C	0.7544	9E-6		0.0093	[0.0052-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
1510	chr2	121309487	121309488	rs2030746	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2q14.2	LOC84931	rs2030746-T	0.398	1E-7	(Trans-ethnic initial)	0.0199	[0.013-0.027] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1510	chr2	121309487	121309488	rs2030746	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2q14.2	LOC84931	rs2030746-T	0.398	8E-9	(Trans-ethnic initial)	0.0214	[0.014-0.029] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1510	chr2	121309487	121309488	rs2030746	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q14.2	LOC84931	rs2030746-T	0.4	9E-9		0.021	[NR] unit increase	NR [NR] (imputed)	N
1510	chr2	121309758	121309759	rs12617659	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q14.2	LOC105373585, GLI2	rs12617659-T	0.147238129122417	3E-11		0.0685	[0.048-0.089] unit decrease	NR [5035015] (imputed)	N
1510	chr2	121310024	121310024	rs34907036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q14.2		rs34907036-TGAA	NR	8E-9		0.0517	[0.034-0.069] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1510	chr2	121310268	121310269	rs6706968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q14.2		rs6706968-C	NR	1E-14		0.0157	[0.012-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1510	chr2	121310268	121310269	rs6706968	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q14.2	LINC01101	rs6706968-A	0.416687	4E-15		0.0018119	[0.0014-0.0023] unit decrease	Affymetrix [13995440] (imputed)	N
1510	chr2	121310268	121310269	rs6706968	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q14.2	INHBB, GLI2	rs6706968-C	0.58	4E-13		7.25	z-score increase	Affymetrix [4311822] (imputed)	N
1510	chr2	121310268	121310269	rs6706968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.2		rs6706968-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1510	chr2	121318165	121318166	rs11688931	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q14.2	GLI2	rs11688931-C	0.8494	8E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1510	chr2	121318616	121318617	rs35641859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q14.2	AC073257.1	rs35641859-G	NR	1E-8		0.0188261	[0.012-0.025] unit decrease	Affymetrix [321788] (imputed)	N
1510	chr2	121325907	121325908	rs9784137	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q14.2	NR	rs9784137-G	0.849	5E-21		0.0608	[0.048-0.074] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1510	chr2	121326296	121326297	rs12623454	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q14.2	LOC84931	rs12623454-G	0.531192	1E-8		0.014827	[0.0097-0.0199] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1510	chr2	121337195	121337196	rs9308614	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q14.2	NR	rs9308614-G	0.1338	5E-23		0.057	[0.046-0.068] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1510	chr2	121337279	121337280	rs9677933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q14.2		rs9677933-C	0.841323	8E-9		0.0308285	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
1510	chr2	121337279	121337280	rs9677933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q14.2		rs9677933-C	0.841363	2E-9		0.0329637	[0.022-0.044] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121337279	121337280	rs9677933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q14.2		rs9677933-C	0.841323	3E-8		0.0297676	[0.019-0.04] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q14.2		rs11688682-G	0.728573	2E-9		0.0278628	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	3E-9		0.0274893	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	2E-10		0.0286865	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	4E-9		0.027163	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	2E-9		0.0272718	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q14.2		rs11688682-G	0.728573	4E-9		0.0270439	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	4E-9		0.0279363	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	3E-10		0.0282451	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q14.2		rs11688682-G	0.728487	4E-11		0.0303991	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q14.2		rs11688682-G	0.728573	1E-9		0.0278233	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	1E-9		0.0283361	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q14.2		rs11688682-G	0.72849	3E-10		0.0283703	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q14.2		rs11688682-G	0.728487	2E-9		0.0280206	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q14.2		rs11688682-C	NR	3E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q14.2	NR	rs11688682-C	NR	2E-10		0.0179	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q14.2	NR	rs11688682-C	0.27089	2E-10		0.01664078	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q14.2	NR	rs11688682-C	0.270888	8E-13		0.018604754	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q14.2		rs11688682-C	0.270997	3E-9		0.01549709	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q14.2	LINC01101	rs11688682-G	0.729164	2E-11		0.0147911	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q14.2	CLASP1	rs11688682-?	NR	8E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [5701386] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q14.2	NR	rs11688682-C	0.270667	2E-16		0.00744839	[0.0056-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q14.2	NR	rs11688682-C	0.270439	1E-12		0.0098121	[0.007-0.0126] unit increase	Affymetrix [16585854] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q14.2	NR	rs11688682-C	0.270667	9E-12		0.00698359	[0.0049-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q14.2	NR	rs11688682-C	0.270439	4E-9		0.00920048	[0.006-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2q14.2		rs11688682-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q14.2		rs11688682-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q14.2	LOC84931	rs11688682-C	0.2384	2E-9		0.2222	[0.15-0.29] mmHg decrease	Affymetrix [NR] (imputed)	N
1510	chr2	121347611	121347612	rs11688682	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q14.2	GLI2	rs11688682-G	0.7278	4E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1510	chr2	121352541	121352542	rs2198223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q14.2	NR	rs2198223-C	NR	5E-10		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr2	121352541	121352542	rs2198223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs2198223-C	NR	7E-12		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr2	121373465	121373466	rs10206072	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q14.2	NR	rs10206072-G	NR	4E-9		1.057	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1511	chr2	121378851	121378852	rs66477705	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q14.2	GLI2	rs66477705-T	0.967	3E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1511	chr2	121406446	121406447	rs112363956	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q14.2		rs112363956-A	NR	1E-8		1.112347	[1.07-1.15]	Affymetrix [7846216] (imputed)	N
1511	chr2	121425338	121425339	rs6752414	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q14.2		rs6752414-T	0.07653	2E-9		1.1307101	NR	Affymetrix [7846216] (imputed)	N
1511	chr2	121440217	121440218	rs10864859	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q14.2	GLI2	rs10864859-G	0.0837	2E-9		0.1962	[0.13-0.26] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1511	chr2	121470970	121470971	rs12463908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.2		rs12463908-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1511	chr2	121471058	121471059	rs12463948	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q14.2	AC018866.1	rs12463948-A	0.8117	3E-13		0.0171	[0.013-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1511	chr2	121495601	121495602	rs697697	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q14.2	NR	rs697697-A	0.383759	1E-9		0.0191581	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1512	chr2	121515158	121515159	rs138730015	30809046	Schmitz B	2019-02-26	Sci Rep	Genome-wide association study suggests impact of chromosome 10 rs139401390 on kidney function in patients with coronary artery disease.	Estimated glomerular filtration rate in coronary artery disease and impaired kidney function	499 European ancestry cases	574 European ancestry cases	2q14.2	GLI2	rs138730015-G	0.012	2E-6		6.13	[0.078-12.182] ml/min/1.73m2 increase	Affymetrix [> 10000000] (imputed)	N
1512	chr2	121524677	121524678	rs116479245	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GLI2	rs116479245-?	NR	8E-9		1.59617	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1512	chr2	121575288	121575289	rs17005238	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q14.2	GLI2	rs17005238-T	0.0776	3E-6		0.065	[0.038-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1512	chr2	121575414	121575415	rs17005241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q14.2		rs17005241-A	NR	2E-9		0.0222	[0.015-0.029] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1512	chr2	121578766	121578767	rs13392139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q14.2		rs13392139-G	0.118412	3E-15		0.0242774	[0.018-0.03] unit decrease	Illumina [13479295] (imputed)	N
1512	chr2	121578766	121578767	rs13392139	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q14.2	GLI2	rs13392139-A	0.9347	2E-13		0.0281	[0.021-0.036] unit increase	Affymetrix [18391927] (imputed)	N
1512	chr2	121578766	121578767	rs13392139	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q14.2	GLI2	rs13392139-?	NR	6E-19		0.038697768	[0.03-0.047] unit decrease	Illumina [27896057] (imputed)	N
1512	chr2	121608993	121608994	rs71424363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q14.2	GLI2	rs71424363-A	NR	4E-8		0.020947	[0.013-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1512	chr2	121608993	121608994	rs71424363	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q14.2	NR	rs71424363-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
1512	chr2	121610185	121610186	rs2034395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q14.2		rs2034395-T	NR	6E-34		0.0233	[0.02-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1512	chr2	121610185	121610186	rs2034395	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q14.2	GLI2	rs2034395-T	NR	2E-10		0.0260703	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1512	chr2	121612658	121612659	rs2166898	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q14.2	GLI2	rs2166898-A	0.08	6E-8		0.052	[0.03-0.074] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1512	chr2	121613994	121613995	rs35539500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.2		rs35539500-?	NR	2E-49				NR [~ 8900000] (imputed)	N
1512	chr2	121613994	121613995	rs35539500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q14.2	GLI2	rs35539500-T	0.8401	9E-8		0.0497	[0.031-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1512	chr2	121614451	121614451	rs35362712	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q14.2	GLI2	rs35362712-?	NR	4E-11		0.021092072	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
1512	chr2	121617051	121617052	rs182027043	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q14.2	GLI2	rs182027043-A	0.9531	2E-6		0.0879	[0.052-0.124] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1512	chr2	121618124	121618125	rs4848124	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q14.2	NR	rs4848124-T	0.382401	2E-10		0.0200711	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
1512	chr2	121618624	121618625	rs4848643	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q14.2	NR	rs4848643-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1512	chr2	121618624	121618625	rs4848643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q14.2		rs4848643-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1512	chr2	121620827	121620828	rs4143116	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q14.2	GLI2, FLJ14816, TFCP2L1	rs4143116-A	0.197	4E-6		2.28	[1.59-3.25]	Illumina [1556551]	N
1512	chr2	121622767	121622768	rs10192454	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q14.2	GLI2	rs10192454-C	0.5054	2E-9		0.0407	[0.027-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1513	chr2	121701288	121701289	rs11122834	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q14.2	GLI2	rs11122834-?	0.29	5E-6		4.93	[NR]	Affymetrix [512497]	N
1514	chr2	121769436	121769437	rs1092479	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	2q14.2	GLI2	rs1092479-C	0.27	4E-8		1.14	[1.09-1.19]	Illumina [up to 7441713] (imputed)	N
1514	chr2	121812223	121812224	rs4848143	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	2q14.2	intergenic	rs4848143-?	NR	9E-6				NR [~ 2000000]	N
1514	chr2	121836874	121836875	rs139940998	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q14.2	GLI2, TFCP2L1	rs139940998-A	0.01	7E-9	(EA)	1.84	[1.21-2.47] unit increase	Illumina [up to 13042663] (imputed)	N
1515	chr2	121933310	121933311	rs11694228	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.2	CLASP1	rs11694228-?	NR	7E-7	(xanthosine)	0.16995575	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1515	chr2	121980464	121980465	rs4848698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs4848698-T	NR	3E-20		0.0294	[0.023-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr2	121980464	121980465	rs4848698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs4848698-T	NR	7E-17		0.0266	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr2	121980464	121980465	rs4848698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q14.2	NR	rs4848698-T	NR	3E-17		0.0269	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr2	121980464	121980465	rs4848698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs4848698-T	NR	2E-16		0.0262	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr2	121985758	121985759	rs34773350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q14.2		rs34773350-T	NR	3E-23		0.0271	[0.022-0.032] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1515	chr2	121985758	121985759	rs34773350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q14.2		rs34773350-T	NR	5E-26		0.0297	[0.024-0.035] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1515	chr2	121985758	121985759	rs34773350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs34773350-T	0.137291	6E-25				Affymetrix, Illumina [24653286] (imputed)	N
1515	chr2	121988390	121988391	rs74902775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q14.2		rs74902775-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q14.2	TFCP2L1	rs11694902-A	0.139399	1E-23		0.031924527	[0.026-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q14.2	TFCP2L1	rs11694902-A	0.139408	4E-25		0.032904875	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q14.2	NR	rs11694902-A	0.139924	1E-21		0.025507	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q14.2	NR	rs11694902-A	0.140078	5E-27		0.028537	[0.023-0.034] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs11694902-A	0.137256	8E-26				Affymetrix, Illumina [24558453] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q14.2	NR	rs11694902-A	0.140117	1E-27		0.02899	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q14.2	TFCP2L1	rs11694902-A	0.1379	2E-20		0.0041	[0.0031-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1515	chr2	121988883	121988884	rs11694902	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q14.2	TFCP2L1	rs11694902-A	0.1393	6E-20		0.0041	[0.0031-0.0051] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1515	chr2	121988923	121988924	rs1078442	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q14.2	TFCP2L1	rs1078442-A	0.46	3E-6		1.038	[1.022-1.0542]	Affymetrix, Illumina [9585923] (imputed)	N
1515	chr2	121988923	121988924	rs1078442	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q14.2	TFCP2L1	rs1078442-A	0.4554	7E-13		0.005	[0.0036-0.0064] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1515	chr2	121989488	121989489	rs2304667	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q14.2	TFCP2L1	rs2304667-A	0.4205	1E-9		0.0233	[0.016-0.031] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1515	chr2	121989488	121989489	rs2304667	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q14.2	TFCP2L1	rs2304667-A	0.5312	1E-7		0.027127	[0.017-0.037] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1515	chr2	121989488	121989489	rs2304667	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q14.2	NR	rs2304667-A	0.3857	1E-6	(men)	0.0304	[0.018-0.043] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1515	chr2	121989656	121989657	rs35847463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.2	NR	rs35847463-A	0.135975	1E-19				Affymetrix, Illumina [24332387] (imputed)	N
1515	chr2	121995637	121995638	rs11689538	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q14.2	TFCP2L1	rs11689538-C		4E-23		0.031	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1515	chr2	121995637	121995638	rs11689538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q14.2	TFCP2L1	rs11689538-C	0.1401	6E-11		0.03368555	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1515	chr2	121995637	121995638	rs11689538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2q14.2	TFCP2L1	rs11689538-C	0.1402	1E-11		0.03471895	[0.025-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1515	chr2	121995637	121995638	rs11689538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q14.2	TFCP2L1	rs11689538-C	0.1402	1E-12		0.03648548	[0.026-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1515	chr2	121995876	121995877	rs11678466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q14.2		rs11678466-C	NR	4E-17		0.0248	[0.019-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1515	chr2	121995876	121995877	rs11678466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q14.2	TFCP2L1	rs11678466-C	0.140662	3E-19		0.028526759	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr2	121997697	121997698	rs750416	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q14.2	TFCP2L1	rs750416-T	0.4619	3E-8		0.1502	[0.097-0.203] mmHg decrease	Affymetrix [NR] (imputed)	N
1515	chr2	121998897	121998898	rs6757766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q14.2		rs6757766-T	NR	2E-26		0.0354	[0.029-0.042] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1515	chr2	122000744	122000745	rs6723509	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q14.2	TFCP2L1	rs6723509-T	0.8597	2E-11		0.2348	[0.17-0.3] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1515	chr2	122003072	122003073	rs882759	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q14.2	NR	rs882759-A	0.64	2E-13		0.0142	[0.01-0.018] unit increase	NR [NR]	N
1515	chr2	122007940	122007941	rs2713206	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	2q14.2	TFCP2L1	rs2713206-T	0.14	2E-8		1.26	1.16-1.36	Illumina [9210350] (imputed)	N
1515	chr2	122018762	122018763	rs17006292	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls	2q14.2	TFCP2L1	rs17006292-?	0.925	5E-9		4.17	[2.50-5.00]	Affymetrix [661736]	N
1516	chr2	122028116	122028117	rs4848700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs4848700-C	NR	3E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr2	122028116	122028117	rs4848700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs4848700-C	NR	4E-10		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1516	chr2	122028116	122028117	rs4848700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q14.2	NR	rs4848700-C	NR	2E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr2	122028116	122028117	rs4848700	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs4848700-C	NR	4E-10		0.0172	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr2	122031768	122031769	rs6712340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q14.2	NR	rs6712340-T	NR	2E-13		0.0249	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr2	122031768	122031769	rs6712340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs6712340-T	NR	2E-9		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1516	chr2	122031768	122031769	rs6712340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q14.2	NR	rs6712340-T	NR	2E-9		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr2	122038782	122038783	rs36096257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q14.2		rs36096257-A	0.049985	1E-15		0.0531361	[0.04-0.066] unit increase	Illumina [13478778] (imputed)	N
1516	chr2	122038782	122038783	rs36096257	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	2q14.2	NR	rs36096257-?	NR	5E-12		0.0612	[0.044-0.079] unit increase novel	Illumina [6108953] (imputed)	N
1516	chr2	122038782	122038783	rs36096257	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q14.2	TFCP2L1	rs36096257-?	NR	2E-13		0.06252	[0.046-0.079] unit decrease novel	Illumina [6108953] (imputed)	N
1516	chr2	122038782	122038783	rs36096257	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2q14.2	TFCP2L1	rs36096257-?	NR	2E-13		0.0613	[0.045-0.078] unit increase novel	Illumina [6108953] (imputed)	N
1516	chr2	122039094	122039095	rs7596689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	2q14.2		rs7596689-C	0.05333	6E-11		0.0491334	[0.034-0.064] unit increase	Illumina [13478792] (imputed)	N
1516	chr2	122039094	122039095	rs7596689	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	2q14.2	TFCP2L1	rs7596689-?	NR	4E-10		0.04939	[0.034-0.065] unit increase novel	Illumina [6108953] (imputed)	N
1516	chr2	122078405	122078406	rs10168049	31579629	Fiorica PN	2019-09-26	PeerJ	Transcriptome association studies of neuropsychiatric traits in African Americans implicate PRMT7 in schizophrenia.	Bipolar disorder	671 African American cases, 348 African American controls	NA	2q14.2	NR	rs10168049-G	0.465	1E-6				Affymetrix [12799548] (imputed)	N
1516	chr2	122113139	122113140	rs12465752	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	2q14.2	CLASP1	rs12465752-?	NR	2E-13		0.02934	[0.021-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1517	chr2	122205589	122205590	rs17006477	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.2	NR	rs17006477-A	0.01045	7E-13	(PGM2)	0.2164	NR unit increase	Illumina [1671387] (imputed)	N
1517	chr2	122256539	122256540	rs62151096	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2q14.2	CLASP1	rs62151096-?	NR	1E-7		3.54	[3.54-2.22]	Illumina [8600000] (imputed)	N
1518	chr2	122362877	122362878	rs4848713	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	2q14.3	CLASP1	rs4848713-?	NR	2E-9		0.02538	[0.017-0.034] unit decrease	Illumina [6108953] (imputed)	N
1518	chr2	122401697	122401698	rs62151109	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2q14.3	CLASP1	rs62151109-?	NR	1E-9		3.97	[2.39-6.59]	Illumina [8600000] (imputed)	N
1518	chr2	122415397	122415398	rs2862183	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	2q14.3	CLASP1	rs2862183-T	0.22	4E-7				Affymetrix, Illumina [at least 2500000] (imputed)	N
1518	chr2	122415397	122415398	rs2862183	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (1df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	2q14.3	CLASP1	rs2862183-T	0.22	8E-9		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1519	chr2	122464494	122464495	rs180791571	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	LOC254128	rs180791571-A	0.999	7E-7	(AA)	0.982	NR unit increase	Illumina [NR] (imputed)	N
1520	chr2	122618174	122618175	rs13023601	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q14.3	NR	rs13023601-T	0.157	1E-8		0.00844369	[0.0055-0.0114] unit decrease	NR [9732723] (imputed)	N
1520	chr2	122663626	122663627	rs6718682	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2q14.3	NR	rs6718682-T	0.274887	2E-9		6.04	z score decrease	NR [~ 10847151] (imputed)	N
1520	chr2	122671384	122671385	rs114666945	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2q14.3	TSN	rs114666945-T	0.0322	8E-6		0.3486	[0.2-0.5] unit decrease	Illumina [up to 38043574] (imputed)	N
1522	chr2	122839889	122839890	rs138045331	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q14.3	TSN	rs138045331-A	0.9937	4E-8		0.07505571	[0.048-0.102] unit decrease	Affymetrix [11514654] (imputed)	N
1523	chr2	122953149	122953150	rs1432302	30087447	Aubart M	2018-08-07	Eur J Hum Genet	Association of modifiers and other genetic factors explain Marfan syndrome clinical variability.	Severe aortic features in Marfan syndrome	51 European ancestry cases, 47 European ancestry controls	NA	2q14.3	hCG_2045614, LOC728241	rs1432302-?	NR	6E-6		5.1	[NR]	Illumina [at least 701570] (imputed)	N
1523	chr2	122998655	122998656	rs6714895	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q14.3		rs6714895-?	NR	3E-8				NR [NR]	N
1523	chr2	122998655	122998656	rs6714895	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q14.3		rs6714895-?	NR	2E-8				NR [NR]	N
1523	chr2	122998655	122998656	rs6714895	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q14.3		rs6714895-?	NR	3E-8				NR [NR]	N
1523	chr2	123002477	123002478	rs116165861	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs116165861-G	0.998	2E-6	(AA)	0.385	NR unit increase	Illumina [NR] (imputed)	N
1523	chr2	123026147	123026148	rs188074355	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs188074355-A	0.999	4E-6	(AA)	0.558	NR unit increase	Illumina [NR] (imputed)	N
1523	chr2	123034709	123034710	rs72841564	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	2q14.3	NR	rs72841564-C		8E-6		0.2604	[0.15-0.37] SD units increase	NR [10700000] (imputed)	N
1523	chr2	123059842	123059843	rs6719035	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q14.3	TSN	rs6719035-A	0.22	5E-7	(EA)	0.07	[-0.0672-0.2072] unit increase	Illumina [up to 13042663] (imputed)	N
1524	chr2	123088280	123088281	rs140381154	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs140381154-G	0.998	1E-6	(AA)	0.387	NR unit increase	Illumina [NR] (imputed)	N
1524	chr2	123101547	123101548	rs142412198	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs142412198-A	0.998	1E-6	(AA)	0.388	NR unit increase	Illumina [NR] (imputed)	N
1524	chr2	123124034	123124035	rs148581520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs148581520-C	0.998	1E-6	(AA)	0.388	NR unit increase	Illumina [NR] (imputed)	N
1524	chr2	123126478	123126479	rs10496584	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	2q14.3	intergenic	rs10496584-G	0.11	4E-6		158.69	[NR] unit increase	Illumina [2380200] (imputed)	N
1524	chr2	123127788	123127789	rs2037892	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	2q14.3	intergenic	rs2037892-A	0.11	5E-6		156.7	[NR] unit increase	Illumina [2380200] (imputed)	N
1524	chr2	123136889	123136890	rs1919922	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	2q14.3	intergenic	rs1919922-T	0.11	5E-6		155.52	[NR] unit increase	Illumina [2380200] (imputed)	N
1524	chr2	123141544	123141545	rs4848768	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	2q14.3	intergenic	rs4848768-G	0.11	6E-6		154.6	[NR] unit increase	Illumina [2380200] (imputed)	N
1524	chr2	123158257	123158258	rs7564093	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	MKI67IP	rs7564093-?	NR	3E-6	(CE 18:2)	0.19128592	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1524	chr2	123167811	123167812	rs142793646	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs142793646-A	0.998	4E-7	(AA)	0.404	NR unit increase	Illumina [NR] (imputed)	N
1524	chr2	123173833	123173834	rs114979721	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs114979721-A	0.998	5E-7	(AA)	0.403	NR unit increase	Illumina [NR] (imputed)	N
1524	chr2	123182189	123182190	rs147377160	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q14.3	intergenic	rs147377160-A	0.00794734280475136	3E-6	(G_Alloprevotella_HB)	1.36909	[0.8-1.94] unit increase	Illumina [7711310] (imputed)	N
1524	chr2	123205990	123205991	rs138158254	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q14.3	Intergenic	rs138158254-A	0.998	5E-7	(AA)	0.4	NR unit increase	Illumina [NR] (imputed)	N
1525	chr2	123209399	123209400	rs181524103	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	2q14.3	Intergenic	rs181524103-G	0.03	7E-7		12.01	[NR] unit increase	Affymetrix [7884700] (imputed)	N
1525	chr2	123217376	123217377	rs72837798	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	2q14.3	TSN, CNTNAP5	rs72837798-G	0.14	9E-6		1.36		Illumina [8974355] (imputed)	N
1525	chr2	123224399	123224400	rs4848780	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	2q14.3	TSN	rs4848780-T	0.335	8E-7	(Gliadin)	0.21	[NR] unit decrease	Illumina [944565] (imputed)	N
1525	chr2	123225622	123225623	rs17007761	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2q14.3	LOC728241	rs17007761-A		1E-8	(AA)			Illumina [NR]	N
1525	chr2	123230796	123230797	rs2219089	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q14.3	NR	rs2219089-T	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1525	chr2	123291021	123291022	rs1527243	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	2q14.3	TSN	rs1527243-?	0.43	1E-6		6.67	[NR]	Affymetrix [512497]	N
1526	chr2	123377941	123377942	rs7566539	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	2q14.3	TSN, CNTNAP5	rs7566539-?	NR	3E-6	(adjusted for dose, GFR & AST)	7.171	unit increase (EA, Australian cohort)	Illumina [610255]	N
1526	chr2	123408942	123408943	rs1439840	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2q14.3	intergenic	rs1439840-?	NR	7E-7		4.7	[2.74-6.66] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1527	chr2	123487990	123487991	rs187133462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	Intergenic	rs187133462-A	1.0	4E-7	(AA)	0.578	unit increase	Illumina [NR] (imputed)	N
1527	chr2	123487990	123487991	rs187133462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	Intergenic	rs187133462-A	1.0	1E-7	(AA)	3.055	NR unit increase	Illumina [NR] (imputed)	N
1527	chr2	123521506	123521507	rs6541857	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	2q14.3	TSN, LINC01826	rs6541857-A	0.7313	8E-6		0.0872	[0.049-0.125] unit increase	NR [NR] (imputed)	N
1527	chr2	123521506	123521507	rs6541857	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	2q14.3	TSN, LINC01826	rs6541857-A	0.729	4E-6		0.1321	[0.076-0.189] unit increase	NR [NR] (imputed)	N
1528	chr2	123606519	123606520	rs17008770	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.3	NR	rs17008770-?	NR	7E-6				Affymetrix [NR]	N
1528	chr2	123641610	123641611	rs17367118	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q14.3	intergenic	rs17367118-?	NR	9E-6	(count)			Perlegen [429981]	N
1529	chr2	123735004	123735005	rs58996896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.3		rs58996896-A	0.7388	4E-9		0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1529	chr2	123735004	123735005	rs58996896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs58996896-A	0.7388	7E-10	(MTAG)	0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1530	chr2	123923808	123923809	rs191899678	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	Intergenic	rs191899678-T	0.987	5E-6	(AA)	0.069	unit increase	Illumina [NR] (imputed)	N
1530	chr2	123964686	123964687	rs1519302	33290381	Li W	2020-12-07	Psychiatr Genet	The influence of regression models on genome-wide association studies of alcohol dependence: a comparison of binary and quantitative analyses.	Alcohol dependence	739 European ancestry cases, 1,251 European ancestry controls	NA	2q14.3	NR	rs1519302-C	0.31	7E-6	(model 2)	0.47	[0.27-0.67] unit increase	Illumina [2100000] (imputed)	N
1530	chr2	123973768	123973769	rs12711628	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q14.3	NR	rs12711628-A	0.307	5E-8		0.00637014	[0.0041-0.0087] unit increase	NR [9732723] (imputed)	N
1531	chr2	124005406	124005407	rs11685902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.3	Intergenic	rs11685902-T	0.5437	4E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1531	chr2	124005406	124005407	rs11685902	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs11685902-T	0.5537	4E-8	(MTAG)	0.0073	[0.0048-0.0098] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1531	chr2	124018798	124018799	rs1519277	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors treated with less than 10 gray radiotherapy	69 European ancestry cases, 2,144 European ancestry controls	NA	2q14.3	intergenic	rs1519277-T	0.06	2E-7		3.12	[1.96-4.96]	Affymetrix, Illumina [16958466] (imputed)	N
1531	chr2	124020789	124020790	rs3923097	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q14.3	TSN, CNTNAP5	rs3923097-T		6E-6		0.32	unit increase	Affymetrix [at least 2696785] (imputed)	N
1531	chr2	124020789	124020790	rs3923097	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q14.3	TSN, CNTNAP5	rs3923097-T		1E-8		0.273	unit increase	Affymetrix [at least 2696785] (imputed)	N
1531	chr2	124021169	124021170	rs187907266	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q14.3	NR	rs187907266-?	NR	4E-6		0.0078936	[0.0046-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1533	chr2	124278618	124278619	rs6722794	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	2q14.3	NA	rs6722794-T	0.584361	1E-8		0.00421083	[0.0028-0.0057] unit increase	NR [NR] (imputed)	N
1533	chr2	124286923	124286924	rs1344228	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	2q14.3	LOC100422580, CNTNAP5	rs1344228-T	0.11	8E-6		1.33	[1.17-1.51]	Illumina [8744746] (imputed)	N
1533	chr2	124301184	124301185	rs7556991	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.3	NR	rs7556991-?	NR	9E-6				Affymetrix [NR]	N
1533	chr2	124305762	124305763	rs12623968	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q14.3	NR	rs12623968-?	NR	6E-6		0.0938734	[0.053-0.135] unit decrease	NR [13958389] (imputed)	N
1533	chr2	124344655	124344656	rs4359660	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2q14.3	NR	rs4359660-C	0.6101	1E-7		0.0433	[0.027-0.059] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1533	chr2	124366978	124366979	rs201166452	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	2q14.3	NR	rs201166452-C		2E-6		0.2697	[0.12-0.41] SD units decrease	NR [10700000] (imputed)	N
1533	chr2	124371003	124371004	rs7574059	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Polycystic ovary syndrome	984 European ancestry cases, 2,964 European ancestry controls	2,021 European ancestry cases, 2,566 European ancestry controls	2q14.3	LOC728241, LOC100131284	rs7574059-C	0.58	2E-7		1.19	[1.06-1.34]	Illumina [at least 624044] (imputed)	N
1534	chr2	124394889	124394892	rs143255171	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2q14.3		rs143255171-?	NR	8E-6		0.9099719	[0.51-1.31] unit decrease	Illumina [9875426] (imputed)	N
1534	chr2	124428610	124428611	rs7573618	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs7573618-A	0.403	9E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1534	chr2	124477275	124477276	rs72840196	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2q14.3	NR	rs72840196-T	0.121	2E-6		0.270469	[0.16-0.38] unit increase	Illumina [~ 6600000] (imputed)	N
1534	chr2	124515040	124515041	rs13006237	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q14.3	NR	rs13006237-A		9E-6				Illumina [2373249] (imputed)	N
1535	chr2	124573721	124573722	rs62163139	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q14.3	NR	rs62163139-?	NR	3E-6		0.19703	[0.11-0.28] unit increase	NR [13958389] (imputed)	N
1535	chr2	124621036	124621037	rs6541929	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	2q14.3	CNTNAP5	rs6541929-?		8E-8				Illumina [563980]	N
1535	chr2	124621036	124621037	rs6541929	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	2q14.3	CNTNAP5	rs6541929-?		2E-7				Illumina [563980]	N
1536	chr2	124663349	124663350	rs17267326	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	2q14.3	CNTNAP5	rs17267326-?		8E-8				Illumina [563980]	N
1536	chr2	124663349	124663350	rs17267326	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau levels	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	2q14.3	CNTNAP5	rs17267326-?		2E-7				Illumina [563980]	N
1536	chr2	124708697	124708698	rs138449900	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q14.3	Intergenic	rs138449900-C	0.996	3E-6	(liability model)	0.66	[0.39-0.93] unit decrease	NR [19725427] (imputed)	N
1536	chr2	124739918	124739919	rs114290302	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	2q14.3	intergenic	rs114290302-C	0.08	9E-6		9.73	NR mg increase	NR [NR] (imputed)	N
1536	chr2	124753155	124753156	rs76854344	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	2q14.3	CNTNAP5	rs76854344-?	NR	8E-10		1.9	[1.5-2.3]	Illumina [~ 5900000] (imputed)	N
1536	chr2	124754046	124754047	rs112014392	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Waist circumference	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q14.3	7SK, AX747402	rs112014392-C	0.04	5E-7	(EA)	0.14	[0.081-0.199] unit increase	Illumina [up to 13042663] (imputed)	N
1537	chr2	124799883	124799884	rs183142321	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2q14.3		rs183142321-A	NR	5E-11		0.666	[0.47-0.86] unit decrease	Affymetrix [509886] (imputed)	N
1537	chr2	124887901	124887902	rs7591828	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	2q14.3		rs7591828-?	NR	6E-7		0.7966	[0.7287-0.8707]	Affymetrix [7975321] (imputed)	N
1538	chr2	124934975	124934976	rs115676291	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	2q14.3	NR	rs115676291-A		7E-6		0.4154	[0.23-0.6] unit decrease	Illumina [12764477] (imputed)	N
1538	chr2	124936906	124936907	rs112265056	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	2q14.3	NR	rs112265056-?	NR	6E-6		0.116111	[0.066-0.167] unit increase	NR [13958389] (imputed)	N
1538	chr2	124950894	124950895	rs7584334	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q14.3	CNTNAP5	rs7584334-?		6E-10				Affymetrix, Illumina [NR] (imputed)	N
1538	chr2	124976162	124976163	rs11123030	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	2q14.3	NR	rs11123030-T	0.491	1E-9		1.032	[1.02-1.04]	NR [5276842] (imputed)	N
1538	chr2	124976162	124976163	rs11123030	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2q14.3	NR	rs11123030-C	0.5098	3E-7		0.006	[0.0036-0.0084] unit decrease	NR [7666894] (imputed)	N
1538	chr2	124983055	124983056	rs1170612	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	2q14.3	CNTNAP5	rs1170612-?	NR	9E-6	(All)	1.37	[NR]	Illumina [up to 531195]	N
1538	chr2	124983055	124983056	rs1170612	22885689	Levinson DF	2012-09-01	Am J Psychiatry	Genome-wide association study of multiplex schizophrenia pedigrees.	Schizophrenia	1,218 European ancestry cases, 990 European ancestry controls, 139 cases, 114 controls	NA	2q14.3	CNTNAP5	rs1170612-?	NR	6E-6	(EA)	1.4	[NR]	Illumina [up to 531195]	N
1538	chr2	124991886	124991887	rs4848924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.3	Intergenic	rs4848924-A	0.7078	3E-21	(MTAG)	0.0172	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1538	chr2	124991886	124991887	rs4848924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q14.3	Intergenic	rs4848924-A	0.7078	1E-14		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1538	chr2	124991886	124991887	rs4848924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.3		rs4848924-A	0.71	4E-14		0.0117	[0.0088-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1538	chr2	124991886	124991887	rs4848924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs4848924-A	0.71	2E-18	(MTAG)	0.0126	[0.0099-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1538	chr2	124998363	124998364	rs1367248	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	2q14.3	CNTNAP5	rs1367248-?	NR	3E-6	(CF-PWVLTA)			Affymetrix [70897]	N
1538	chr2	125010266	125010267	rs115483919	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs115483919-T	0.0122	5E-9	(CTSS)	0.01183	NR unit increase	Illumina [1671387] (imputed)	N
1538	chr2	125010266	125010267	rs115483919	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs115483919-T	0.0122	2E-8	(FGA)	0.2981	NR unit increase	Illumina [1671387] (imputed)	N
1538	chr2	125012320	125012321	rs779995	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q14.3	NR	rs779995-C	0.373578797506338	2E-8		0.005355515	[0.0035-0.0072] unit increase	NR [NR]	N
1538	chr2	125014320	125014321	rs10496632	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q14.3	Intergenic	rs10496632-C	0.2863	1E-13	(MTAG)	0.0147	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1538	chr2	125014320	125014321	rs10496632	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q14.3	Intergenic	rs10496632-G	0.7137	3E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1538	chr2	125016574	125016575	rs111935984	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CNTNAP5	rs111935984-?	NR	4E-11	(female)	4.57425	[NR] unit increase	Affymetrix [NR] (imputed)	N
1538	chr2	125021040	125021041	rs7583384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q14.3	Intergenic	rs7583384-T	0.2712	4E-8	(MTAG)	0.0142	[0.0091-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1539	chr2	125047179	125047180	rs12614303	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q14.3	NR	rs12614303-C	0.554442	9E-7		1.0706638	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1539	chr2	125049494	125049495	rs192176182	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs192176182-A	0.0122	5E-9	(CTSS)	0.01183	NR unit increase	Illumina [1671387] (imputed)	N
1539	chr2	125049494	125049495	rs192176182	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs192176182-A	0.0122	2E-8	(FGA)	0.2981	NR unit increase	Illumina [1671387] (imputed)	N
1539	chr2	125052995	125052996	rs780024	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q14.3		rs780024-T	0.652	8E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1539	chr2	125052995	125052996	rs780024	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling guilty	373,380 European ancestry individuals	NA	2q14.3	CNTNAP5	rs780024-A	0.341371	4E-8		5.48	z score increase	NR [10847151] (imputed)	N
1539	chr2	125072564	125072565	rs66530326	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	2q14.3	NR	rs66530326-CT		7E-6		0.1934	[0.11-0.28] unit decrease	Illumina [12764477] (imputed)	N
1539	chr2	125148640	125148641	rs4848930	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	2q14.3	NR	rs4848930-T	0.3842	8E-6		0.1519	[0.085-0.219] unit increase	Illumina [NR] (imputed)	N
1539	chr2	125158775	125158776	rs1820931	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	2q14.3	NR	rs1820931-T	0.5798	6E-6		0.1506	[0.085-0.216] unit decrease	Illumina [NR] (imputed)	N
1539	chr2	125159947	125159948	rs11673887	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	2q14.3	NR	rs11673887-T	0.3985	4E-6		0.1553	[0.089-0.221] unit increase	Illumina [NR] (imputed)	N
1540	chr2	125183449	125183450	rs17011501	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum Mid-posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q14.3	CNTNAP5	rs17011501-?		6E-6				Illumina [4322238] (imputed)	N
1540	chr2	125254264	125254265	rs115167191	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q14.3	NR	rs115167191-?	NR	6E-6		0.26618	[0.15-0.38] unit increase	NR [13958389] (imputed)	N
1540	chr2	125256735	125256736	rs11899928	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q14.3	NR	rs11899928-C	0.0215231680017802	9E-6	(IGP14)	0.685	[0.38-0.99] unit increase	Illumina [~ 2500000] (imputed)	N
1540	chr2	125256735	125256736	rs11899928	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q14.3	NR	rs11899928-C	0.0215231680017802	3E-6	(IGP67)	0.7169	[0.42-1.02] unit increase	Illumina [~ 2500000] (imputed)	N
1540	chr2	125256735	125256736	rs11899928	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q14.3	NR	rs11899928-C	0.0215184841870824	8E-6	(IGP63)	0.6871	[0.39-0.99] unit decrease	Illumina [~ 2500000] (imputed)	N
1540	chr2	125281909	125281910	rs17727261	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	2q14.3	CNTNAP5	rs17727261-?	NR	5E-7	(risperidone)	10.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
1540	chr2	125291836	125291837	rs13021885	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q14.3	NR	rs13021885-C	0.932509117935024	8E-6	(IGP57)	0.3904	[0.22-0.56] unit decrease	Illumina [~ 2500000] (imputed)	N
1540	chr2	125293579	125293580	rs72843198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs72843198-T	0.051	1E-8	(MTAG)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1540	chr2	125304034	125304035	rs12711680	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	2q14.3	CNTNAP5	rs12711680-G	0.36	2E-8		3.18	[2.06-4.3] unit increase	Illumina [6097251] (imputed)	N
1541	chr2	125315703	125315704	rs4848939	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	2q14.3	CNTNAP5	rs4848939-G	0.3	4E-6		2.75	[1.57-3.93] unit increase	Illumina [6097251] (imputed)	N
1541	chr2	125322834	125322835	rs6541961	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	GYPC	rs6541961-?	NR	9E-6	(TAG 56:9)	0.14830586	[0.083-0.214] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1541	chr2	125327949	125327950	rs2901331	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q14.3	CNTNAP5	rs2901331-A	0.31	6E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1541	chr2	125341074	125341075	rs6753520	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q14.3	NA	rs6753520-T		2E-10		0.0117986	[0.0082-0.0154] unit increase	Illumina [13288253] (imputed)	N
1541	chr2	125355088	125355089	rs13019539	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q14.3	CNTNAP5	rs13019539-A	0.4	1E-9		0.0116	[0.0079-0.0153] unit increase	Affymetrix [18391927] (imputed)	N
1541	chr2	125361806	125361807	rs34282335	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	2q14.3	NR	rs34282335-G	0.1442	3E-6		0.202	[0.12-0.29] unit decrease	Illumina [10677593] (imputed)	N
1541	chr2	125364682	125364683	rs72841380	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	2q14.3	CNTNAP5	rs72841380-A	NR	1E-6		11.0145	[6.72-15.3] unit increase	Illumina [NR] (imputed)	N
1541	chr2	125383004	125383005	rs150248456	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	2q14.3	CNTNAP5	rs150248456-A	0.989	3E-10	(YKL-40)	88.276	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
1542	chr2	125438640	125438641	rs76064513	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q14.3	CNTNAP5	rs76064513-T	0.1342	3E-8		1.0343777		Affymetrix [11880941] (imputed)	N
1542	chr2	125440355	125440356	rs17011851	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs17011851-A	0.974	2E-6	(AA)	0.049	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125440494	125440495	rs1454139	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs1454139-G	0.974	2E-6	(AA)	0.049	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125441251	125441252	rs191947856	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs191947856-A	0.996	2E-6	(AA)	0.162	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125441692	125441693	rs17011859	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs17011859-G	0.974	2E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125442212	125442213	rs17011865	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs17011865-A	0.974	2E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125442487	125442488	rs66820110	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs66820110-C	0.974	2E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125442628	125442629	rs1454137	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs1454137-A	0.974	2E-6	(AA)	0.05	unit increase	Illumina [NR] (imputed)	N
1542	chr2	125518979	125518980	rs11899245	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	2q14.3	CNTNAP5	rs11899245-T	0.27	1E-6		0.27	[0.11-0.43] unit increase	Illumina, Perlegen [2156702] (imputed)	N
1543	chr2	125568804	125568805	rs186609563	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	CNTNAP5	rs186609563-G	0.994	4E-6	(AA)	0.138	unit increase	Illumina [NR] (imputed)	N
1545	chr2	125873207	125873208	rs13010566	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.3		rs13010566-A	0.4718	1E-10		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1545	chr2	125892223	125892224	rs4386322	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q14.3	snosnR60_Z15	rs4386322-T	0.09264	1E-8		0.020385195	[0.013-0.027] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1545	chr2	125892223	125892224	rs4386322	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs4386322-T	0.0874	3E-12	(MTAG)	0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1545	chr2	125940716	125940717	rs4589766	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.3	Intergenic	rs4589766-A	0.9559	2E-8	(MTAG)	0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1546	chr2	125985243	125985244	rs13032103	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	2q14.3	CNTNAP5	rs13032103-?	NR	9E-9		1.067	[1.044-1.091]	Illumina [13729857] (imputed)	N
1546	chr2	126016483	126016484	rs314940	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	2q14.3		rs314940-T	NR	4E-6		1.14	[1.08-1.2]	Illumina [7105229] (imputed)	N
1546	chr2	126024786	126024787	rs6743032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.3		rs6743032-A	0.0926	8E-12		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1547	chr2	126103460	126103461	rs60403733	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2q14.3		rs60403733-G	NR	2E-8		0.551	[0.36-0.74] unit decrease	Affymetrix [509886] (imputed)	N
1547	chr2	126109994	126109995	rs148461179	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2q14.3		rs148461179-A	NR	2E-8		0.554	[0.36-0.75] unit decrease	Affymetrix [509886] (imputed)	N
1547	chr2	126123418	126123419	rs74852700	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2q14.3		rs74852700-G	NR	7E-9		0.579	[0.38-0.77] unit decrease	Affymetrix [509886] (imputed)	N
1547	chr2	126165045	126165046	rs6541988	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q14.3	Intergenic	rs6541988-A	0.3056	1E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1548	chr2	126337052	126337053	rs4849021	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2q14.3	AC097499.1	rs4849021-?	NR	5E-11		0.01011	[0.0055-0.0147] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1550	chr2	126606094	126606095	rs4289202	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in type 2 diabetes	9,197 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	2q14.3	NR	rs4289202-?		4E-6		2.51	[1.44-3.58] unit increase	Affymetrix, Illumina [up to 9343778] (imputed)	N
1550	chr2	126612986	126612987	rs72847150	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q14.3	NR	rs72847150-?		9E-6				Illumina [4322238] (imputed)	N
1551	chr2	126709090	126709091	rs13413764	34270794	Watts K	2021-07-16	Int J Cancer	Genome-wide association studies of toxicity to oxaliplatin and fluoropyrimidine chemotherapy with or without cetuximab in 1800 patients with advanced colorectal cancer.	Adverse response to chemotherapy in colorectal cancer (XELOX) (Lethargy)	707 European ancestry individuals	NA	2q14.3		rs13413764-?		5E-6		1.8	[1.4-2.3]	NR [4178858] (imputed)	N
1552	chr2	126795788	126795789	rs72862436	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2q14.3	AC114813.1	rs72862436-A	0.1276	6E-8		0.0559	[0.036-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1552	chr2	126800644	126800645	rs1455618	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	BIN1	rs1455618-?	NR	5E-6	(CE 20:4)	0.17988816	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1552	chr2	126872573	126872574	rs28691221	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	2q14.3	GYPC	rs28691221-T	0.3985	2E-6		0.0073	[0.0042-0.0104] unit increase	Affymetrix [~ 7740000] (imputed)	N
1554	chr2	127016739	127016740	rs28515082	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	2q14.3	GYPC	rs28515082-?	NR	6E-7	(Hispanic/Latino)	1.444908	[0.88-2.01] unit increase	Illumina [32101933] (imputed)	N
1554	chr2	127016739	127016740	rs28515082	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Systolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	2q14.3	GYPC	rs28515082-?	NR	1E-8		1.351	[0.89-1.81] unit increase	Illumina [32101933] (imputed)	N
1554	chr2	127062851	127062852	rs115467285	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs115467285-A	0.01916	2E-9	(CKB)	0.02489	NR unit increase	Illumina [1671387] (imputed)	N
1554	chr2	127093939	127093940	rs28504487	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	2q14.3		rs28504487-?	NR	4E-6		0.41	[0.24-0.58] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1554	chr2	127100833	127100834	rs79895937	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2q14.3	NR	rs79895937-?	NR	3E-11		0.28	[0.18-0.38] unit increase	Illumina [at least 830937] (imputed)	N
1555	chr2	127183453	127183454	rs13001283	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q14.3	GYPC	rs13001283-A	0.1596	3E-13		0.1513	[0.11-0.19] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1556	chr2	127330953	127330954	rs1550404	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	2q14.3	GYPC	rs1550404-?	NR	1E-6	(high intelligence)	7.05	[4.23-9.87] unit increase	Illumina [795637]	N
1556	chr2	127342266	127342267	rs76485002	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	2q14.3		rs76485002-?	NR	3E-10				NR [8243736]	N
1557	chr2	127408870	127408871	rs2119151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q14.3		rs2119151-T	NR	1E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
1557	chr2	127408870	127408871	rs2119151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q14.3	NR	rs2119151-T	0.581286	5E-12		0.014155	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1557	chr2	127411212	127411213	rs13395010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs13395010-G	0.595947	4E-11				Affymetrix, Illumina [21126107] (imputed)	N
1557	chr2	127430210	127430211	rs6736203	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	2q14.3	NR	rs6736203-?	NR	7E-6		4.5	[NR] z-score decrease	Illumina [1387382] (imputed)	N
1557	chr2	127433464	127433465	rs28387148	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q14.3	GYPC	rs28387148-T	0.105	6E-11		1.08	[1.05-1.10]	Illumina [34740186] (imputed)	N
1557	chr2	127433464	127433465	rs28387148	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q14.3	GYPC	rs28387148-T	0.1	7E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q14.3		rs111631066-A	NR	2E-13		0.071	[0.052-0.09] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q14.3	GYPC	rs111631066-A	0.015601	2E-12		0.065905854	[0.048-0.084] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q14.3	GYPC	rs111631066-A	0.015605	1E-15		0.07480497	[0.057-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q14.3	GYPC	rs111631066-A	0.015615	2E-9		0.055715773	[0.038-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q14.3	GYPC	rs111631066-A	0.015618	4E-12		0.06433886	[0.046-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1557	chr2	127451513	127451514	rs111631066	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q14.3	GYPC	rs111631066-A		3E-8		0.049	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1557	chr2	127452763	127452764	rs10184704	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	2q14.3	GYPC	rs10184704-C	NR	6E-6		2.3	[1.60-3.30]	Illumina [2017629] (imputed)	N
1557	chr2	127454229	127454230	rs6568	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	BIN1	rs6568-?	NR	4E-6	(CE 18:3)	0.19279236	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1557	chr2	127456128	127456129	rs6431173	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	BIN1	rs6431173-?	NR	9E-7	(CE 20:5)	0.19541226	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1557	chr2	127472247	127472248	rs540878340	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	2q14.3	LINC00885	rs540878340-A	0.002	2E-7		0.914	[0.57-1.26] unit increase	Illumina [32241096] (imputed)	N
1557	chr2	127499606	127499607	rs139941554	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	2q14.3	NR	rs139941554-G	0.003	7E-6		8.54	[3.36-21.74]	Illumina [8672852] (imputed)	N
1557	chr2	127517227	127517228	rs6725179	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	2q14.3		rs6725179-A		3E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [1722107] (imputed)	N
1557	chr2	127523769	127523770	rs115639339	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	2q14.3	NR	rs115639339-?	NR	8E-6		0.6279	[0.33-0.92] unit increase	Illumina [at least 560000] (imputed)	N
1558	chr2	127534269	127534270	rs2002133	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q14.3	GYPC	rs2002133-C	0.2863	2E-6	(African)			Illumina [4404269] (imputed)	N
1558	chr2	127621088	127621089	rs12692119	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	2q14.3	GYPC, BIN1	rs12692119-A	0.44	5E-6		1.6949153		Affymetrix [at least 730985] (imputed)	N
1558	chr2	127621088	127621089	rs12692119	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	2q14.3	GYPC, BIN1	rs12692119-A	0.44	2E-6	(AA)	1.89		Affymetrix [at least 730985] (imputed)	N
1558	chr2	127644741	127644742	rs74949468	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs74949468-C	0.0122	7E-9	(TOMM70)	0.0364	NR unit increase	Illumina [1671387] (imputed)	N
1558	chr2	127648945	127648946	rs11899448	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q14.3	NR	rs11899448-?	NR	4E-7				Affymetrix [NR]	N
1558	chr2	127662896	127662897	rs13418717	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	2q14.3	LOC339760	rs13418717-?	0.20	3E-6	(AA)	1.46	[0.97-2.20]	Affymetrix, Illumina [2478304] (imputed)	N
1559	chr2	127714850	127714851	rs79959541	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	2q14.3	NR	rs79959541-?	NR	2E-6		0.144223	[0.085-0.203] unit increase	Affymetrix [9658292] (imputed)	N
1559	chr2	127729692	127729693	rs115928898	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q14.3		rs115928898-G	0.00861	4E-8		0.7372	[0.47-1] unit increase	Illumina [18238311] (imputed)	N
1559	chr2	127758447	127758448	rs12993006	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	2q14.3	BIN1	rs12993006-T	0.21	4E-6		1.45	[1.349-1.56]	Illumina [NR]	N
1560	chr2	127826532	127826533	rs1060743	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs1060743-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127826532	127826533	rs1060743	28714976	Sims R	2017-09-01	Nat Genet	Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.	Alzheimer's disease (late onset)	up to 16,097 European ancestry cases, up to 18,077 European ancestry controls	up to 20,693 European ancestry cases, up to 30,266 European ancestry controls	2q14.3	BIN1	rs1060743-?	NR	5E-8		1.1066935		Illumina [241551]	N
1560	chr2	127830218	127830219	rs17014873	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs17014873-?	NR	4E-9				Affymetrix [7795605] (imputed)	N
1560	chr2	127839780	127839781	rs10194375	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs10194375-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127842606	127842607	rs11694743	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q14.3	BIN1	rs11694743-A	0.6225	1E-7	(BIN1, 9574_11_3)	0.13544229	[0.085-0.186] unit decrease	Illumina [> 1000000] (imputed)	N
1560	chr2	127852020	127852021	rs10207628	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	2q14.3	BIN1	rs10207628-?	0.81	1E-6		1.4084507	[NR]	Illumina [1847262] (imputed)	N
1560	chr2	127859412	127859413	rs10166461	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2q14.3	BIN1	rs10166461-A	0.1733	4E-6	(Ordinal II)	0.2636	[0.15-0.38] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1560	chr2	127861445	127861446	rs11682186	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q14.3	NR	rs11682186-C	0.765193	8E-9		0.013267	[0.0088-0.0178] unit decrease	NR [NR]	N
1560	chr2	127861765	127861766	rs4663096	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q14.3	BIN1	rs4663096-A	0.1794	2E-9		0.0148	[0.01-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1560	chr2	127862053	127862054	rs72838215	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs72838215-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127862132	127862133	rs6431219	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs6431219-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127862132	127862133	rs6431219	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	2q14.3	NR	rs6431219-C	0.51	8E-6		1.55	[1.28-1.88]	Illumina [17125421] (imputed)	N
1560	chr2	127863223	127863224	rs7584040	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	2q14.3	BIN1	rs7584040-?	NR	2E-6		0.0537322	unit increase	NR [10687077] (imputed)	N
1560	chr2	127865099	127865100	rs13032148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q14.3		rs13032148-A	NR	6E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1560	chr2	127865099	127865100	rs13032148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q14.3	NR	rs13032148-A	NR	1E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1560	chr2	127865099	127865100	rs13032148	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	2q14.3	BIN1	rs13032148-?	NR	1E-9		0.0289	[0.02-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1560	chr2	127866534	127866535	rs7604081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q14.3		rs7604081-C	NR	7E-9		0.0227	[0.015-0.03] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1560	chr2	127866534	127866535	rs7604081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q14.3	BIN1	rs7604081-C	0.055995	1E-10		0.030964928	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1560	chr2	127867600	127867601	rs11692858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q14.3	BIN1	rs11692858-T	0.0589499999999999	2E-14		0.03628167	[0.027-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1560	chr2	127867659	127867660	rs11695202	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs11695202-G	0.0628752	2E-12				Affymetrix, Illumina [23114412] (imputed)	N
1560	chr2	127874243	127874244	rs10198772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs10198772-A	0.0644156	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
1560	chr2	127878431	127878432	rs4663099	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs4663099-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127880448	127880449	rs6431220	34122051	Wang H	2021-05-28	Front Aging Neurosci	Similar Genetic Architecture of Alzheimer's Disease and Differential <i>APOE</i> Effect Between Sexes.	Alzheimer's disease	5,705 European ancestry cases, 7,067 European ancestry controls	NA	2q14.3		rs6431220-A	0.24	5E-10		0.811	[0.759-0.867]	NR [38043082] (imputed)	N
1560	chr2	127882181	127882182	rs35103166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q14.3		rs35103166-C	NR	3E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1560	chr2	127882181	127882182	rs35103166	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs35103166-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127884122	127884123	rs7575209	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs7575209-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127885246	127885247	rs58682665	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs58682665-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127886157	127886158	rs13025717	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	2q14.3	LOC105373605, BIN1	rs13025717-T	0.295	8E-10		1.2	[1.13-1.28]	Affymetrix, Illumina [38043082] (imputed)	N
1560	chr2	127886232	127886233	rs13025765	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs13025765-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127886674	127886675	rs13031703	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs13031703-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127886954	127886955	rs11683933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q14.3	NR	rs11683933-A	0.054911	4E-12		0.028449	[0.02-0.036] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1560	chr2	127886954	127886955	rs11683933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q14.3	NR	rs11683933-A	0.055134	6E-13		0.030649	[0.022-0.039] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1560	chr2	127887984	127887985	rs12989701	21390209	Hu X	2011-02-24	PLoS One	Meta-analysis for genome-wide association study identifies multiple variants at the BIN1 locus associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	1,831 European ancestry cases, 1,764 European ancestry controls	751 cases, 751 controls	2q14.3	BIN1	rs12989701-?	NR	3E-10		1.23	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1560	chr2	127889636	127889637	rs7561528	30979435	Lo MT	2019-03-12	Neurobiol Aging	Identification of genetic heterogeneity of Alzheimer's disease across age.	Alzheimer's disease (onset between ages 58 and 79)	7,316 European ancestry cases, 7,579 European ancestry controls	NA	2q14.3	LOC105373605, BIN1	rs7561528-A	0.37	2E-15		1.26	[1.19-1.33]	Affymetrix, Illumina [38043082] (imputed)	N
1560	chr2	127889636	127889637	rs7561528	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	2q14.3	BIN1	rs7561528-?	NR	6E-11		1.25	[NR]	Illumina [2543888] (imputed)	N
1560	chr2	127889636	127889637	rs7561528	21460841	Naj AC	2011-04-03	Nat Genet	Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	8,309 European ancestry cases, 7,366 European ancestry controls	10,523 European ancestry cases, 28,231 European ancestry controls	2q14.3	BIN1	rs7561528-A	0.35	4E-14		1.17	[1.13-1.22]	Affymetrix, Illumina [2324889] (imputed)	N
1560	chr2	127891426	127891427	rs4663105	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q14.3		rs4663105-A	0.5672	6E-25		119.86407	z score increase	NR [6814003]	N
1560	chr2	127891426	127891427	rs4663105	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	2q14.3		rs4663105-?	NR	4E-58				Illumina [NR] (imputed)	N
1560	chr2	127891426	127891427	rs4663105	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	2q14.3	BIN1	rs4663105-C	NR	6E-26		10.54	NR z-score increase	Affymetrix [10847151] (imputed)	N
1560	chr2	127891426	127891427	rs4663105	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	2q14.3	BIN1	rs4663105-C	0.415	3E-44		13.94	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1560	chr2	127891426	127891427	rs4663105	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	2q14.3	BIN1	rs4663105-C	NR	4E-29		11.21158	NR z-score increase	Illumina [up to 9862738] (imputed)	N
1560	chr2	127891426	127891427	rs4663105	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	2q14.3	BIN1	rs4663105-C	0.43	2E-12		1.19	[1.13-1.24]	NR [NR]	N
1560	chr2	127892809	127892810	rs6733839	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BIN1	5,366 Icelandic ancestry individuals	NA	2q14.3		rs6733839-T	0.3768	3E-14		0.148596	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	33589841	Chia R	2021-02-15	Nat Genet	Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.	Dementia with Lewy bodies	2,591 European ancestry cases, 4,027 European ancestry controls	970 European ancestry cases, 8,928 European ancestry controls	2q14.3		rs6733839-T	0.382	1E-10		1.16	[1.05-1.28]	NR [20137051]	N
1560	chr2	127892809	127892810	rs6733839	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	2q14.3	BIN1	rs6733839-?	NR	1E-54		0.155615	unit increase	NR [10687077] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 17,008 cases, 3,289 Spanish ancestry controls, 37,154 controls	1,943 Spanish ancestry cases, 8,572 cases, 3,016 Spanish ancestry controls, 11,312 controls	2q14.3	BIN1	rs6733839-?	NR	3E-30		1.2	[1.16-1.23]	Affymetrix [up to 7055881] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	31473137	Moreno-Grau S	2019-08-13	Alzheimers Dement	Genome-wide association analysis of dementia and its clinical endophenotypes reveal novel loci associated with Alzheimer's disease and three causality networks: The GR@ACE project.	Alzheimer's disease	4,120 Spanish ancestry cases, 11,999 cases, 3,289 Spanish ancestry controls, 9,236 controls	1,943 Spanish ancestry cases, 3,016 Spanish ancestry controls	2q14.3	BIN1	rs6733839-?	NR	5E-20		1.23	[1.18 - 1.28]	Affymetrix [up to 7700000] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	2q14.3	BIN1	rs6733839-?		3E-25				NR [NR]	N
1560	chr2	127892809	127892810	rs6733839	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	2q14.3	BIN1	rs6733839-T	0.3797	1E-29		11.3	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	2q14.3	BIN1	rs6733839-T	NR	1E-29		11.3	NR z-score increase	Illumina [up to 9862738] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Paternal history of Alzheimer's disease	14,338 British ancestry cases, 245,941 British ancestry controls	NA	2q14.3	NR	rs6733839-?		2E-8		1.0982196	NR	Affymetrix [7795605] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Maternal history of Alzheimer's disease	27,696 British ancestry cases, 260,980 British ancestry controls	NA	2q14.3	NR	rs6733839-?	NR	4E-21		1.1225677	NR	Affymetrix [7795605] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 European ancestry individuals with no parental history of Alzheimer's disease	NA	2q14.3	NR	rs6733839-?	NR	1E-27		1.1140478		Affymetrix [7795605] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs6733839-?	NR	2E-64		1.1470575	[1.12899064608461-1.16541354700668]	Affymetrix [7795605] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	29458411	Chung J	2018-02-20	Alzheimers Res Ther	Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.	Neuritic plaques or neurofibrillary tangles (pleiotropy)	3,135 European ancestry Alzheimer's disease cases, 463 European ancestry controls	NA	2q14.3	BIN1	rs6733839-?	NR	2E-7				NR [6500000] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	2q14.3	BIN1	rs6733839-T	0.41	1E-9		1.2	[1.13-1.27]	NR [NR]	N
1560	chr2	127892809	127892810	rs6733839	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	2q14.3	BIN1	rs6733839-T	0.43	3E-6	(Primary)	0.3288	[0.19-0.47] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1560	chr2	127892809	127892810	rs6733839	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	2q14.3	BIN1	rs6733839-T	0.409	7E-44		1.22	[1.18-1.25]	Illumina [7055881] (imputed)	N
1560	chr2	127893896	127893897	rs745717	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs745717-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127894483	127894484	rs730482	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q14.3	NR	rs730482-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
1560	chr2	127894614	127894615	rs744373	21627779	Antunez C	2011-05-31	Genome Med	The membrane-spanning 4-domains, subfamily A (MS4A) gene cluster contains a common variant associated with Alzheimer's disease.	Alzheimer's disease	319 European ancestry cases, 769 European ancestry controls, 2,690 cases, 2,237 controls	4,982 European ancestry cases, 7,961 European ancestry controls, 2,190 cases, 3,374 controls	2q14.3	BIN1	rs744373-?	NR	2E-9		1.18	[NR]	Affymetrix, Illumina [696707] (imputed)	N
1560	chr2	127894614	127894615	rs744373	21460840	Hollingworth P	2011-04-03	Nat Genet	Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.	Alzheimer's disease	6,688 European ancestry cases, 13,685 European ancestry controls	13,182 European ancestry cases, 26,161 European ancestry controls	2q14.3	BIN1	rs744373-?	0.29	3E-14		1.17	[1.12-1.21]	Affymetrix, Illumina [496763]	N
1560	chr2	127894614	127894615	rs744373	21390209	Hu X	2011-02-24	PLoS One	Meta-analysis for genome-wide association study identifies multiple variants at the BIN1 locus associated with late-onset Alzheimer's disease.	Alzheimer's disease (late onset)	1,831 European ancestry cases, 1,764 European ancestry controls	751 cases, 751 controls	2q14.3	BIN1	rs744373-?	NR	1E-10		1.19	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1560	chr2	127896022	127896023	rs1469980	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2q14.3	NR	rs1469980-?	NR	3E-9		5.914	NR z score decrease	Illumina [at least 830937] (imputed)	N
1561	chr2	127948907	127948908	rs2896889	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q14.3	NR	rs2896889-T	0.01	8E-6		1.39	[1.25-1.53]	Illumina [8468885] (imputed)	N
1561	chr2	127950996	127950997	rs4321325	25376901	Munir MS	2014-11-05	Genet Epidemiol	Genetic markers associated with plasma protein C level in African Americans: the atherosclerosis risk in communities (ARIC) study.	Protein C levels	2,701 African American individuals	NA	2q14.3	CYP27C1	rs4321325-?	NR	4E-9	(Conditioned on rs7580658 and rs1799808)	0.2	[NR] unit increase	Affymetrix [2649157]	N
1561	chr2	127963423	127963424	rs35035604	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2q14.3	NR	rs35035604-?	NR	4E-6	(male)	0.1204	[0.069-0.172] unit decrease	Illumina [11133794] (imputed)	N
1561	chr2	127971181	127971182	rs140608390	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	2q14.3	CYP27C1	rs140608390-C	0.03	7E-24	(AA)	0.53	[NR] ?g/mL decrease	Affymetrix [at least 22484459] (imputed)	N
1561	chr2	127982644	127982645	rs7567389	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2q14.3	CYP27C1	rs7567389-A	0.30	2E-6		0.03	[NR] unit decrease	Illumina [2380486] (imputed)	N
1561	chr2	127990839	127990840	rs4662711	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q14.3	Intergenic	rs4662711-A	0.414	3E-9	(MTAG)	0.0079	[0.0054-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1561	chr2	128003912	128003920	rs72502963	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2q14.3	NR	rs72502963-?	NR	8E-6	(male)	0.115	[0.064-0.166] unit decrease	Illumina [11133794] (imputed)	N
1561	chr2	128013973	128013974	rs550829767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q14.3		rs550829767-C	NR	4E-12		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1561	chr2	128040914	128040915	rs4150441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q14.3		rs4150441-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1561	chr2	128046547	128046548	rs4150416	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	2q14.3	NR	rs4150416-?	NR	3E-7		0.0534	[0.033-0.074] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
1562	chr2	128060067	128060068	rs4233583	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	2q14.3	MAP3K2	rs4233583-A	0.37	1E-13	(EA)	0.07	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
1562	chr2	128060067	128060068	rs4233583	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	2q14.3	MAP3K2	rs4233583-A	0.22	6E-12	(AA)	0.13	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
1562	chr2	128119845	128119846	rs55998444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.3		rs55998444-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1562	chr2	128153334	128153335	rs13026611	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q14.3		rs13026611-A	0.3555	1E-8		0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1562	chr2	128159260	128159261	rs7580658	25376901	Munir MS	2014-11-05	Genet Epidemiol	Genetic markers associated with plasma protein C level in African Americans: the atherosclerosis risk in communities (ARIC) study.	Protein C levels	2,701 African American individuals	NA	2q14.3	PROC	rs7580658-A	0.23	2E-12		0.15	[0.11-0.19] unit increase	Affymetrix [2649157]	N
1562	chr2	128174842	128174843	rs2069901	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q14.3	PROC	rs2069901-T	0.57953125	5E-13	(PROC, 2961_1_2)	0.172077	[0.13-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1562	chr2	128175874	128175875	rs1799809	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROC	5,364 Icelandic ancestry individuals	NA	2q14.3		rs1799809-G	0.4219	1E-19		0.170494	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
1562	chr2	128175874	128175875	rs1799809	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROC	5,348 Icelandic ancestry individuals	NA	2q14.3		rs1799809-G	0.4219	2E-22		0.164818	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1562	chr2	128176039	128176040	rs1799810	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q14.3	PROC	rs1799810-A	0.57859375	2E-12	(PROC, 3758_63_3)	0.17261001	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
1562	chr2	128176039	128176040	rs1799810	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	2q14.3	PROC	rs1799810-T	0.43	2E-42	(EA)	0.12	[NR] ?g/mL decrease	Affymetrix [at least 22484459] (imputed)	N
1562	chr2	128176039	128176040	rs1799810	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	2q14.3	intergenic	rs1799810-T	0.41	9E-6		0.02	[NR] unit decrease	Illumina [2380486] (imputed)	N
1562	chr2	128177376	128177377	rs1158867	20802025	Tang W	2010-08-27	Blood	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	2q14.3	PROC	rs1158867-C	0.42	4E-36		0.12	[0.10-0.14] ug/ml decrease	Affymetrix [2461269]	N
1563	chr2	128198549	128198550	rs148153250	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q14.3	NR	rs148153250-A	0.02	6E-6		1.29	[1.17-1.41]	Illumina [8468885] (imputed)	N
1563	chr2	128218872	128218873	rs140692556	31014085	Welsh P	2019-04-24	Circulation	Cardiac Troponin T and Troponin I in the General Population: Comparing and Contrasting their Genetic Determinants and Associations with Outcomes.	Cardiac troponin-I levels	14,579 European ancestry individuals	NA	2q14.3	IWS1	rs140692556-T		3E-7		0.71	[NR] unit increase	Illumina [24111857] (imputed)	N
1563	chr2	128256056	128256057	rs334147	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q14.3	intergenic	rs334147-T	0.929	9E-6		0.046	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1563	chr2	128288161	128288162	rs138689899	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q14.3	NR	rs138689899-C	0.02	2E-6		1.53	1.29-1.82	NR [at least 8482392] (imputed)	N
1563	chr2	128288161	128288162	rs138689899	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q14.3	NR	rs138689899-C	0.02	2E-6		1.53	1.29-1.82	NR [at least 8482392] (imputed)	N
1564	chr2	128351503	128351504	rs13419716	25376901	Munir MS	2014-11-05	Genet Epidemiol	Genetic markers associated with plasma protein C level in African Americans: the atherosclerosis risk in communities (ARIC) study.	Protein C levels	2,701 African American individuals	NA	2q14.3	MYO7B	rs13419716-?	NR	4E-9	(Conditioned on rs7580658 and rs1799808)	0.26	[NR] unit increase	Affymetrix [2649157]	N
1564	chr2	128392546	128392547	rs4662750	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	2q14.3	NR	rs4662750-?	NR	2E-7		1.0893246	[1.05-1.12]	Illumina [7437091] (imputed)	N
1564	chr2	128396166	128396167	rs78022502	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		2q14.3	LIMS2	rs78022502-?	0.06	2E-6		0.23	unit decrease	Illumina [NR] (imputed)	N
1564	chr2	128410243	128410244	rs11688303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs11688303-T	0.122939	1E-14				Affymetrix, Illumina [24649327] (imputed)	N
1564	chr2	128410243	128410244	rs11688303	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q14.3	NR	rs11688303-T	0.120295	3E-13		0.021084	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1564	chr2	128421244	128421245	rs73954691	25483131	Ghassibe-Sabbagh M	2014-12-08	Sci Rep	T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility.	Type 2 diabetes	1,384 Lebanese ancestry cases, 1,902 Lebanese ancestry controls	NA	2q14.3	LIMS2	rs73954691-G	0.98	3E-6		2.6	[1.74-3.88]	Illumina [5891794] (imputed)	N
1564	chr2	128431609	128431609	rs11387114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q14.3	NR	rs11387114-I	0.211096	6E-11		0.016353	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1564	chr2	128442013	128442014	rs6730142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q14.3		rs6730142-T	NR	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1565	chr2	128457940	128457941	rs7580688	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2q14.3	SFT2D3	rs7580688-G	0.2725	9E-6		0.0073	[0.004-0.0106] unit increase	Affymetrix [~ 7740000] (imputed)	N
1565	chr2	128463617	128463618	rs2923	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q14.3	SFT2D3, WDR33	rs2923-C	0.9616	4E-6		0.0743	[0.043-0.106] unit decrease	NR [8041861] (imputed)	N
1565	chr2	128486221	128486222	rs56365317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs56365317-G	0.223519	6E-12				Affymetrix, Illumina [23114412] (imputed)	N
1565	chr2	128502584	128502585	rs17015535	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2q14.3	WDR33	rs17015535-A	0.91	6E-6	(AA)	0.38	[0.2-0.56] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1565	chr2	128513909	128513911	rs758753442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q14.3	WDR33	rs758753442-C	0.295223	2E-9		0.0148968445	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1565	chr2	128519796	128519797	rs13013415	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1/FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	2q14.3	NR	rs13013415-?		3E-6	(AA)			Illumina [up to 524000]	N
1566	chr2	128592494	128592495	rs6430954	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q14.3	POLR2D	rs6430954-G	0.68253	6E-11		0.0137928	[0.0097-0.0179] unit increase	Affymetrix [NR] (imputed)	N
1566	chr2	128593976	128593977	rs35706812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q14.3		rs35706812-G	NR	7E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1566	chr2	128593976	128593977	rs35706812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q14.3	POLR2D	rs35706812-A	0.570299	8E-12		0.0131394	[0.0094-0.0169] unit increase	Affymetrix [NR] (imputed)	N
1566	chr2	128685260	128685261	rs2461451	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	2q14.3	NR	rs2461451-A	NR	3E-7		7320.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1567	chr2	128804730	128804731	rs150005072	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q14.3	SAP130	rs150005072-T	0.0238747633281275	2E-6	(O_Lactobacillales_HB)	1.05943	[0.62-1.5] unit decrease	Illumina [7711310] (imputed)	N
1567	chr2	128824569	128824570	rs13008750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2q14.3		rs13008750-T	NR	2E-8		0.0361	[0.024-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1567	chr2	128834303	128834304	rs4662592	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	2q14.3	NR	rs4662592-T	NR	3E-7		8370.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1568	chr2	128848650	128848651	rs6731515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.3		rs6731515-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1568	chr2	128868306	128868307	rs4600592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.3		rs4600592-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1568	chr2	128915179	128915180	rs141413766	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	2q14.3	UGGT1	rs141413766-G	0.02	9E-6		0.18	[0.1-0.26] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1568	chr2	128931950	128931951	rs10180829	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q14.3	UGGT1	rs10180829-T	0.429	2E-6	(AA)	0.032	[0.018-0.046] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1568	chr2	128931950	128931951	rs10180829	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q14.3	UGGT1	rs10180829-T		2E-11				Affymetrix, Illumina [17972582] (imputed)	N
1568	chr2	128938955	128938956	rs142367753	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	2q14.3	UGGT1	rs142367753-C	0.98	4E-6		0.151	[0.086-0.216] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1568	chr2	128972832	128972833	rs6725404	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	2q14.3	NR	rs6725404-A	0.022431	9E-6		1.08	[1.04-1.12]	Illumina [270934]	N
1569	chr2	129016889	129016890	rs737191	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	2q14.3	NR	rs737191-T	NR	3E-7		9050.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1569	chr2	129027960	129027961	rs13427836	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in diabetes	up to 5,825 European ancestry cases	up to 1,962 European ancestry cases	2q14.3	HS6ST1	rs13427836-T	0.15	6E-7		0.19	[0.11-0.27] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1569	chr2	129029401	129029402	rs7561107	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q14.3	NR	rs7561107-?	NR	3E-6	(Latino)	1.0082	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1569	chr2	129030337	129030338	rs80018307	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q14.3		rs80018307-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1569	chr2	129030337	129030338	rs80018307	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q14.3	NR	rs80018307-?	NR	8E-6		4.475	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1569	chr2	129042613	129042614	rs72839421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q14.3		rs72839421-T	NR	1E-11		0.0179	[0.013-0.023] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1569	chr2	129042638	129042639	rs12477083	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q14.3		rs12477083-?	NR	7E-10		0.0168769	[0.011-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1569	chr2	129048432	129048433	rs2084498	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HS6ST1	5,363 Icelandic ancestry individuals	NA	2q14.3		rs2084498-A	0.4309	2E-18		0.166623	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
1569	chr2	129050353	129050354	rs6761320	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q14.3	HS6ST1	rs6761320-C	0.566943	8E-11		0.0120606	[0.0084-0.0157] unit decrease	NR [13737936] (imputed)	N
1569	chr2	129053865	129053866	rs7586881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q14.3		rs7586881-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1569	chr2	129056883	129056884	rs8179790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q14.3		rs8179790-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1569	chr2	129057415	129057416	rs7598684	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q14.3	HS6ST1	rs7598684-A	0.56953125	4E-11	(HS6ST1, 5465_32_3)	0.16498703	[0.12-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1569	chr2	129060870	129060871	rs71420836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q14.3	NR	rs71420836-T	0.0856175	3E-16				Affymetrix, Illumina [23472807] (imputed)	N
1569	chr2	129075876	129075877	rs200979099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q14.3	NR	rs200979099-T	NR	7E-43		0.051	[0.044-0.058] unit increase	Affymetrix [9000000] (imputed)	N
1569	chr2	129075876	129075877	rs200979099	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q14.3	NR	rs200979099-T	NR	6E-43		0.0487	[0.042-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1569	chr2	129076473	129076497	rs527692639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q14.3		rs527692639-A	NR	1E-16		0.04	[0.031-0.049] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1569	chr2	129076473	129076497	rs527692639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q14.3	HS6ST1	rs527692639-A	0.068759	9E-15		0.034717437	[0.026-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr2	129076473	129076497	rs527692639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q14.3	HS6ST1	rs527692639-A	0.068769	5E-24		0.045121066	[0.036-0.054] unit increase	Affymetrix [93095623] (imputed)	N
1569	chr2	129084424	129084425	rs34827544	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q14.3	HS6ST1	rs34827544-T	0.157	2E-18	(Heparan-sulfate 6-O-sulfotransferase 1, HS6ST1.5465.32.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1569	chr2	129102621	129102622	rs62158105	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q14.3	NR	rs62158105-?	NR	5E-6		1.13	[0.89-1.43]	Illumina [539000] (imputed)	N
1570	chr2	129133291	129133292	rs79341575	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	2q14.3	GPR17	rs79341575-C	0.0551	3E-6		0.063	NR unit increase	NR [NR] (imputed)	N
1570	chr2	129143953	129143954	rs7565310	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	2q14.3	Intergenic	rs7565310-A	0.38	9E-6	(Trend model)	1.53	[1.27-1.84]	Illumina [508761]	N
1570	chr2	129163935	129163936	rs10206163	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q14.3		rs10206163-C	0.42	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
1570	chr2	129235144	129235145	rs13394036	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q14.3	UGCGL1	rs13394036-?	NR	7E-7	(lactose)	0.29509315	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1571	chr2	129270905	129270906	rs73956024	33891562	Hao Q	2021-04-23	Aging (Albany NY)	Age-related differences of genetic susceptibility to patients with acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (adult vs childhood)	85 Chinese ancestry adult cases, 381 Chinese ancestry childhood cases	NR	2q14.3	HS6ST1	rs73956024-?	NR	4E-6		3.11	[1.93-5.04]	NR [9466286] (imputed)	N
1571	chr2	129314228	129314229	rs2438162	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	2q14.3	NR	rs2438162-A	0.2833	5E-6		2.0436	NR	Illumina [5393447] (imputed)	N
1571	chr2	129354252	129354253	rs76971198	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q14.3	NR	rs76971198-?	NR	5E-6		0.385732	[0.22-0.55] unit increase	NR [13958389] (imputed)	N
1572	chr2	129405121	129405122	rs17048658	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	2q14.3	NR	rs17048658-A	0.1766	5E-6		0.5077	[0.22-0.8]	Illumina [10000612] (imputed)	N
1572	chr2	129457797	129457798	rs10928827	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2q14.3	HS6ST1	rs10928827-G	NR	4E-9	(Lactobacillales order)	0.23	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1572	chr2	129457797	129457798	rs10928827	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2q14.3	HS6ST1	rs10928827-G	NR	1E-8	(Bacilli class)	0.22	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1572	chr2	129478841	129478842	rs4662834	21106707	Gu J	2010-11-24	Hum Mol Genet	A genetic variant near the PMAIP1/Noxa gene is associated with increased bleomycin sensitivity.	Response to bleomycin (chromatid breaks)	673 European ancestry individuals	834 European ancestry individuals	2q14.3	NR	rs4662834-A	0.41	5E-6		0.08	[0.04-0.11] unit decrease	Illumina [539437]	N
1573	chr2	129504350	129504351	rs7561966	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		2q14.3	HS6ST1	rs7561966-A	NR	3E-6		0.6809	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1573	chr2	129534286	129534287	rs35131544	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q14.3	AC012451.1	rs35131544-T	0.0316	7E-6		0.1764	[0.099-0.253] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1573	chr2	129542766	129542767	rs11690256	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2q14.3	NR	rs11690256-T	0.349	2E-6		0.099	[0.058-0.14] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1573	chr2	129543528	129543529	rs6718750	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	2q14.3		rs6718750-C	0.05146	2E-6		1.967	[1.486-2.605]	Affymetrix [7975321] (imputed)	N
1573	chr2	129562700	129562701	rs71420856	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q14.3	Intergenic	rs71420856-T	0.999	2E-6	(AA)	0.326	unit increase	Illumina [NR] (imputed)	N
1573	chr2	129626787	129626788	rs12479413	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrogenesis (alpha smooth muscle actin levels)	102 European ancestry individuals, 19 African ancestry individuals	NA	2q14.3	AK311291	rs12479413-G	0.05328	2E-6		0.9579	[0.59-1.32] unit decrease	Illumina [533687]	N
1574	chr2	129666338	129666339	rs79275043	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	2q14.3	NR	rs79275043-C		8E-6		0.4155	[0.23-0.6] SD units increase	NR [10700000] (imputed)	N
1574	chr2	129669655	129669656	rs4662863	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	2q14.3	NR	rs4662863-?		6E-8	(genus_Chryseobacterium)	0.7591219	[0.5-1.02] unit decrease	Affymetrix [211319]	N
1574	chr2	129669655	129669656	rs4662863	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	2q14.3	NR	rs4662863-?		4E-6	(genus_Acinetobacter)	0.6524187	[0.39-0.91] unit decrease	Affymetrix [211319]	N
1574	chr2	129677414	129677415	rs115944785	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q14.3	NR	rs115944785-?	NR	2E-6	(EA)	0.402	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1574	chr2	129744343	129744344	rs13013037	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	2q14.3	Intergenic	rs13013037-A	NR	7E-7	(Hispanic)	1.68		Illumina [at least 360704] (imputed)	N
1575	chr2	129764268	129764269	rs79038650	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q14.3	NR	rs79038650-T	0.0122	4E-9	(CES2)	0.3222	NR unit increase	Illumina [1671387] (imputed)	N
1575	chr2	129809434	129809436	rs199868941	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q14.3		rs199868941-G	NR	3E-7		4.9024	[3.08-6.72] unit increase	Illumina [NR] (imputed)	N
1575	chr2	129842699	129842700	rs10928874	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	2q14.3		rs10928874-A	NR	8E-6		0.37	[0.23-0.61]	Illumina [NR] (imputed)	N
1576	chr2	129994331	129994332	rs1660895	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	2q21.1	NR	rs1660895-A	0.47	7E-7		1.3	[1.20-1.40]	Illumina [4058415] (imputed)	N
1577	chr2	130034011	130034012	rs837841	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (docetaxel)	147 Japanese ancestry cases, 233 Japanese ancestry controls	NA	2q21.1	LOC151121	rs837841-T	0.662	8E-6	(Recessive model)	1.279	[0.930-1.759]	Illumina [733202]	N
1577	chr2	130034325	130034326	rs7567687	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q21.1	RAB6C	rs7567687-T	0.533	5E-8		0.0065	[0.0041-0.0089] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1577	chr2	130034325	130034326	rs7567687	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	2q21.1	RAB6C	rs7567687-?	0.47	8E-6	(Age 20-60 years)	1.32	[1.18-1.49]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1577	chr2	130034325	130034326	rs7567687	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	2q21.1	RAB6C	rs7567687-?	0.46	8E-7	(Age 20-81 years)	1.32	[1.18-1.47]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1577	chr2	130104445	130104446	rs837890	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q21.1	NR	rs837890-?	NR	4E-8				Illumina [7760689] (imputed)	N
1577	chr2	130124873	130124874	rs17576726	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.1	LOC728378	rs17576726-?	NR	9E-6	(SM 22:1)	0.4216322	[0.24-0.61] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1578	chr2	130216042	130216043	rs4662945	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	2q21.1	LOC151121	rs4662945-?		3E-6				Affymetrix, Illumina [1348798]	N
1578	chr2	130221285	130221286	rs11693353	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.1	LOC728378	rs11693353-?	NR	2E-7	(PC 36:2)	0.28458852	[0.18-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1579	chr2	130316930	130316931	rs4662959	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.1	LOC728378	rs4662959-?	NR	1E-6	(lactose)	0.22697169	[0.14-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1579	chr2	130395732	130395733	rs113065892	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q21.1	NR	rs113065892-?	NR	3E-8				Illumina [7760689] (imputed)	N
1580	chr2	130460207	130460208	rs4662982	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.1	LOC728378	rs4662982-?	NR	5E-6	(lactose)	0.37506804	[0.21-0.54] unit increase	Affymetrix [at least 2500000] (imputed)	N
1580	chr2	130467856	130467857	rs10189546	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs10189546-G	0.88	2E-6		0.059	unit increase	Illumina [~ 6300000] (imputed)	N
1580	chr2	130468365	130468366	rs10928927	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs10928927-T	0.84	3E-7		0.057	unit increase	Illumina [~ 6300000] (imputed)	N
1580	chr2	130469240	130469241	rs4662984	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs4662984-A	0.84	2E-7		0.057	unit increase	Illumina [~ 6300000] (imputed)	N
1580	chr2	130469907	130469908	rs4662986	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs4662986-G	0.84	2E-7		0.058	unit increase	Illumina [~ 6300000] (imputed)	N
1580	chr2	130473221	130473222	rs13408379	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs13408379-G	0.85	2E-7		0.059	unit increase	Illumina [~ 6300000] (imputed)	N
1580	chr2	130505888	130505889	rs13035304	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	2q21.1	intergenic	rs13035304-G	0.88	5E-6		0.063	unit increase	Illumina [~ 6300000] (imputed)	N
1581	chr2	130608375	130608376	rs11891318	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on HLA DR+ Natural Killer	2,971 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q21.1		rs11891318-G	0.10518	5E-8		0.243	[0.16-0.33] unit increase	Illumina [17967059] (imputed)	N
1581	chr2	130653713	130653714	rs951389793	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2q21.1	UGT1A3, UGT1A4, UGT1A10	rs951389793-?	NR	1E-10	(cysteinylglycine)	1.12	[NR] unit increase	Illumina [14760605] (imputed)	N
1581	chr2	130653890	130653891	rs13401697	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q21.1		rs13401697-?	NR	3E-6		1.0374047	[1.02158202643524-1.05347236105075]	Illumina [up to 7827597] (imputed)	N
1581	chr2	130669495	130669496	rs116711403	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q21.1	NR	rs116711403-A	0.0453	2E-9	(DPP7)	0.0835	NR unit increase	Illumina [1671387] (imputed)	N
1582	chr2	130757303	130757304	rs13020137	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	2q21.1	NR	rs13020137-A	NR	5E-6		1.26	[NR]	Illumina [up to 9792010] (imputed)	N
1584	chr2	131063800	131063801	rs13022580	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	2q21.1	RPL19P4, TEKT4P3	rs13022580-?		8E-6		1.6	[1.30-1.96]	Illumina [341191]	N
1588	chr2	131538517	131538518	rs6739185	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q21.1	AMER3, AX746725	rs6739185-A	0.03	1E-7	(African American)	1.13	[0.7-1.56] unit increase	Illumina [up to 13042663] (imputed)	N
1588	chr2	131545191	131545192	rs13395546	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	2q21.1	CYCSP8	rs13395546-A		1E-6		0.16	[0.10-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1589	chr2	131688586	131688587	rs6718816	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2q21.1		rs6718816-G	0.590817	3E-6		0.012973	[0.0076-0.0184] unit increase	Illumina [13900000] (imputed)	N
1589	chr2	131724904	131724905	rs4377367	26222057	Pander J	2015-07-29	PLoS One	Genome Wide Association Study for Predictors of Progression Free Survival in Patients on Capecitabine, Oxaliplatin, Bevacizumab and Cetuximab in First-Line Therapy of Metastatic Colorectal Cancer.	Progression free survival in metastatic colorectal cancer (CAPOX-B vs CAPOX-B plus cetuximab)	256 cases treated with CAPOX-B plus cetuximab, 264 cases treated with CAPOX-B	NA	2q21.1	ARHGEF4	rs4377367-C	NR	6E-6		1.5873016	[1.32-1.92]	Illumina [2850023] (imputed)	N
1590	chr2	131734373	131734374	rs72861488	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q21.1	ARHGEF4	rs72861488-A	NR	4E-6		0.39405277	[0.23-0.56] unit decrease	Illumina [> 6200000] (imputed)	N
1590	chr2	131769447	131769448	rs35437121	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital left-sided heart lesions	326 European ancestry cases, 8,486 European ancestry controls	NA		ARHGEF4	rs35437121-?		4E-8		2.27	[1.68-3.03]	Affymetrix, Illumina [9216527] (imputed)	N
1590	chr2	131790798	131790799	rs12998401	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	2q21.1	NR	rs12998401-?	NR	2E-6		0.0212	[0.012-0.03] unit increase	Illumina [~ 7800000] (imputed)	N
1591	chr2	131879651	131879652	rs148483531	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q21.1	NR	rs148483531-A	0.01045	4E-11	(ADHFE1)	0.05764	NR unit increase	Illumina [1671387] (imputed)	N
1593	chr2	132124213	132124214	rs184159435	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	2q21.1	AC073869.13	rs184159435-G	NR	5E-6		0.02853	[0.016-0.041] unit increase	Illumina [NR] (imputed)	N
1594	chr2	132340625	132340626	rs10803581	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q21.1	NR	rs10803581-?	NR	2E-42				Affymetrix [NR]	N
1595	chr2	132439442	132439443	rs11673817	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	2q21.1	NR	rs11673817-?	NR	8E-6		0.1733	[0.098-0.249] unit decrease	Illumina [at least 560000] (imputed)	N
1595	chr2	132470604	132470605	rs11681143	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q21.2	NR	rs11681143-?	NR	3E-7				Affymetrix [NR]	N
1596	chr2	132582510	132582511	rs12470837	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels in APOEe4+ carriers	177 Alzheimer's disease cases, 103 controls	NA	2q21.2	LOC647996	rs12470837-?	NR	1E-6		0.468	[NR] decrease	Illumina [5970354] (imputed)	N
1596	chr2	132582510	132582511	rs12470837	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	2q21.2	LOC647996	rs12470837-?		1E-6		0.336	[NR] unit decrease	Illumina [5970354] (imputed)	N
1597	chr2	132712192	132712193	rs141951987	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	2q21.2	C2orf27A	rs141951987-?	0.014782	7E-8		16.498344	[5.965522-45.628087]	Affymetrix, Illumina [NR] (imputed)	N
1598	chr2	132800585	132800586	rs7369729	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2q21.2		rs7369729-C	0.450223	5E-6		0.0140355	[0.0079-0.0202] unit decrease	Illumina [13900000] (imputed)	N
1600	chr2	133144391	133144392	rs16831128	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2q21.2	intergenic	rs16831128-G	0.189	5E-6		0.08	[NR] unit increase	Illumina [948658]	N
1600	chr2	133144391	133144392	rs16831128	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	2q21.2	intergenic	rs16831128-G	0.189	4E-7		1.45	[1.26-1.67]	Illumina [948658]	N
1601	chr2	133182493	133182494	rs2315385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q21.2		rs2315385-G	NR	8E-27		0.0217	[0.018-0.026] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1601	chr2	133194031	133194032	rs3762465	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q21.2	MIR9986	rs3762465-T	0.66951	3E-29		0.00598014	[0.0049-0.007] unit increase	Affymetrix [13995440] (imputed)	N
1601	chr2	133196451	133196452	rs3748861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q21.2		rs3748861-A	NR	2E-9		0.0169	[0.011-0.022] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1601	chr2	133224390	133224391	rs6753618	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator percent predicted FEV1 in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	2q21.2	GPR39	rs6753618-A		6E-6		4.316	unit increase	Illumina [635970]	N
1601	chr2	133224390	133224391	rs6753618	30068317	Li X	2018-08-01	BMC Med Genet	Genome-wide association study of lung function and clinical implication in heavy smokers.	Post bronchodilator FEV1/FVC ratio in smoking	1,086 European ancestry COPD cases, 559 European ancestry controls	NA	2q21.2	GPR39	rs6753618-A		6E-6		0.02683	[NR] unit increase	Illumina [635970]	N
1601	chr2	133253242	133253243	rs16832308	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	2q21.2	GPR390	rs16832308-?	NR	6E-7		6.3	3.05-13.01	Illumina [~ 18000000] (imputed)	N
1602	chr2	133303537	133303538	rs3109133	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	2q21.2	GPR39	rs3109133-C	0.091	1E-6		0.00315	[0.0019-0.0044] unit decrease	Affymetrix [1219546] (imputed)	N
1603	chr2	133472053	133472054	rs11686423	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	2q21.2	NCKAP5	rs11686423-A		8E-6		0.82	[NR]	Illumina [up to 9464381] (imputed)	N
1603	chr2	133492749	133492750	rs984521	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	2q21.2		rs984521-A	NR	2E-10	(additive)	0.75	[0.521-0.98] unit decrease	Illumina [5894709] (imputed)	N
1603	chr2	133523604	133523605	rs13033310	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q21.2	NR	rs13033310-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1603	chr2	133523604	133523605	rs13033310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q21.2		rs13033310-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1603	chr2	133523604	133523605	rs13033310	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q21.2	NA	rs13033310-A	0.2519	3E-11		0.0146	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
1603	chr2	133529457	133529458	rs111763437	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q21.2	NR	rs111763437-?		6E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
1604	chr2	133584470	133584471	rs1374740	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Serum IgE levels	727 Peruvian individuals	NA	2q21.2		rs1374740-?	NR	2E-6		0.178	unit decrease	Illumina [NR] (imputed)	N
1604	chr2	133631057	133631058	rs180692175	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	2q21.2	NR	rs180692175-G	0.024	9E-6		3.94	[2.15-7.22]	Illumina [7261187] (imputed)	N
1605	chr2	133746629	133746630	rs1437898	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (age of onset)	978 European ancestry cases, 883 European ancestry controls	NA	2q21.2	FLJ34870	rs1437898-?	0.40	8E-6			[NR]	Illumina [551642]	N
1605	chr2	133777291	133777292	rs189654928	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere positive)	54 African ancestry cases, 28 Hispanic/Latino cases, 18 East Asian ancestry cases, 728 European ancestry cases, 43 South Asian ancestry cases, 593 African ancestry controls, 92 Hispanic/Latino controls, 121 East Asian ancestry controls, 18,791 European ancestry controls, 595 South Asian ancestry controls	NA	2q21.2	NCKAP5-AS1	rs189654928-C	0.98867	6E-8		1.014	[0.65-1.38] unit decrease	Affymetrix [8590397] (imputed)	N
1605	chr2	133792118	133792119	rs1898562	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	2q21.2	NR	rs1898562-?		6E-7	(IgA)	0.4012	[NR] unit increase	Illumina [NR]	N
1607	chr2	133966176	133966177	rs1836216	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	2q21.2	NR	rs1836216-T	NR	5E-6	(AA)	0.127612	[0.073-0.182] unit decrease	Affymetrix [up to 6007810] (imputed)	N
1607	chr2	134005568	134005569	rs10496702	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	2q21.2	NAP5	rs10496702-?	NR	7E-7		1.3968	[NR]	Affymetrix [722112]	N
1607	chr2	134023318	134023319	rs117204046	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	2q21.2	NCKAP5	rs117204046-?	NR	4E-6		0.236	[0.14-0.33] unit decrease	Illumina [6319684] (imputed)	N
1607	chr2	134040518	134040519	rs7577925	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q21.2	FLJ34870	rs7577925-?	NR	3E-6	(binary)			Perlegen [429981]	N
1607	chr2	134076246	134076247	rs150769227	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q21.2	NR	rs150769227-A	0.01	6E-6		1.48	[1.3-1.66]	Illumina [8468885] (imputed)	N
1608	chr2	134194292	134194293	rs77437827	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q21.2	NCKAP5	rs77437827-T	0.103451207918249	1E-6	(G_Phascolarctobacterium_RNT)	0.230924	[0.14-0.32] unit decrease	Illumina [7711310] (imputed)	N
1608	chr2	134217686	134217687	rs1435560	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.2	LYPD1	rs1435560-?	NR	1E-6	(TAG 52:2)	0.24652608	[0.15-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1609	chr2	134230216	134230217	rs1821625	23412934	Gourraud PA	2013-02-13	Brain	A genome-wide association study of brain lesion distribution in multiple sclerosis.	Multiple sclerosis	284 European ancestry individuals		2q21.2	NAP5	rs1821625-?		7E-6	(Cluxel size)			Illumina [208975]	N
1609	chr2	134253642	134253643	rs1897429	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q21.2		rs1897429-A	0.37	6E-26		10.54	z score increase	Affymetrix [9061022] (imputed)	N
1609	chr2	134253642	134253643	rs1897429	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q21.2	NR	rs1897429-A	0.4191	2E-9				NR [9056863] (imputed)	N
1609	chr2	134253972	134253973	rs7559239	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q21.2		rs7559239-T	0.42	6E-10		6.19	z score increase	Affymetrix [9061022] (imputed)	N
1609	chr2	134256133	134256134	rs7595258	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q21.2		rs7595258-A	0.37	1E-8		5.72	z score increase	Affymetrix [9061022] (imputed)	N
1609	chr2	134261294	134261295	rs1432284	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q21.2	NCKAP5	rs1432284-?		4E-6				Illumina [4322238] (imputed)	N
1609	chr2	134262624	134262625	rs4954059	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q21.2	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs4954059-?		3E-10				NR [7428630] (imputed)	N
1609	chr2	134262624	134262625	rs4954059	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q21.2	NCKAP5	rs4954059-?		5E-8				NR [7428630] (imputed)	N
1609	chr2	134265753	134265754	rs6430424	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q21.2	NR	rs6430424-A	0.4753	1E-8				NR [9056863] (imputed)	N
1609	chr2	134266000	134266001	rs16826005	23646285	Khor SS	2013-04-16	PeerJ	Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.	Hypersomnia (HLA-DQB1*06:02 negative)	125 Japanese ancestry cases, 562 Japanese ancestry controls		2q21.2	NCKAP5	rs16826005-G	0.319	1E-7	(recessive)	3.52	[2.17-5.70]	Affymetrix [508366] (imputed)	N
1609	chr2	134274624	134274625	rs1966628	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2q21.2		rs1966628-?	NR	8E-6		1.64	[1.31-2.05]	Illumina [6778521] (imputed)	N
1609	chr2	134279836	134279837	rs1812081	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	2q21.2	MGAT5	rs1812081-?		5E-6	(PCB99)	0.13	[0.071-0.189] unit increase	Affymetrix [629686]	N
1609	chr2	134312959	134312960	rs1368091	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x dichotomous lifestyle risk score interaction (2df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA		NCKAP5	rs1368091-G	0.281	4E-6				NR [2407627] (imputed)	N
1609	chr2	134312959	134312960	rs1368091	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Diastolic blood pressure x dichotomous lifestyle risk score interaction (1df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA		NCKAP5	rs1368091-G	0.281	7E-7		1.73	[1.04-2.42] unit increase	NR [2407627] (imputed)	N
1609	chr2	134312959	134312960	rs1368091	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA		NR	rs1368091-?	NR	7E-6		0.0077884	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1609	chr2	134326084	134326085	rs17816356	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q21.2	NCKAP5	rs17816356-A	0.05	8E-10		0.96	[0.65-1.27] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1609	chr2	134326084	134326085	rs17816356	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q21.2	NCKAP5	rs17816356-A	0.0552	3E-9		0.9423	[0.63-1.25] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1609	chr2	134332760	134332761	rs7588354	25649651	Wang X	2015-02-03	J Alzheimers Dis	Genetic Determinants of Survival in Patientswith Alzheimer's Disease.	Alzheimer's disease (survival time)	983 cases	NA	2q21.2	NCKAP5	rs7588354-?		1E-6		1.5151515	[NR]	Illumina [803323]	N
1610	chr2	134356843	134356844	rs7569198	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q21.2	MGAT5	rs7569198-T	0.143357814633371	2E-6		0.0036619	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1610	chr2	134359703	134359704	rs145480657	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	2q21.2	NCKAP5, MIR3679	rs145480657-A	0.015	5E-7		2.39	[1.71-3.36]	Illumina [7206774] (imputed)	N
1610	chr2	134363031	134363032	rs7588567	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	2q21.2	NCKAP5, MIR3679	rs7588567-T	NR	7E-7		0.14	[0.085-0.195] unit decrease	Illumina [27700000] (imputed)	N
1610	chr2	134363031	134363032	rs7588567	22419738	Osman W	2012-03-22	Hum Mol Genet	A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.	Glaucoma (primary open-angle)	1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls	1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls	2q21.2	NCKAP5	rs7588567-G	0.586	4E-7		1.18	[1.10-1.25]	Illumina [602216]	N
1610	chr2	134364316	134364317	rs373322440	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q21.2	NR	rs373322440-?	NR	2E-6		2.68	[1.92-3.73]	Illumina [539000] (imputed)	N
1610	chr2	134374834	134374835	rs528181067	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	2q21.2	NCKAP5	rs528181067-A	0.01	3E-6		0.823	[0.48-1.17] unit decrease	Illumina [NR] (imputed)	N
1610	chr2	134395154	134395157	rs200814246	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	2q21.2	NCKAP5, MGAT5	rs200814246-?	NR	5E-6		0.350739	[0.2-0.5] unit decrease	Illumina [at least 950000] (imputed)	N
1610	chr2	134434823	134434824	rs7567288	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q21.2	NCKAP5	rs7567288-T	0.8	2E-12		0.032	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1610	chr2	134437958	134437959	rs1901440	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q21.2	NCKAP5	rs1901440-A	0.66	3E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1610	chr2	134437958	134437959	rs1901440	22293537	Kiyotani K	2012-01-29	Pharmacogenet Genomics	A genome-wide association study identifies four genetic markers for hematological toxicities in cancer patients receiving gemcitabine therapy.	Response to gemcitabine in pancreatic cancer	21 Japanese ancestry adverse reaction cases, 58 Japanese ancestry non-adverse reaction individuals	33 Japanese ancestry adverse reaction cases, 62 Japanese ancestry non-adverse reaction individuals	2q21.2	intergenic	rs1901440-C	0.20	3E-6	(Recessive)	34.0	[4.29-269.48]	Illumina [470064]	N
1610	chr2	134441045	134441046	rs1901442	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q21.2	NR	rs1901442-?	NR	9E-22				Illumina [at least 7383741] (imputed)	N
1610	chr2	134455113	134455116	rs578097290	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q21.2	RN7SKP93	rs578097290-A	0.0032	8E-6		1.506	[0.85-2.17] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1610	chr2	134455239	134455240	rs17818859	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2q21.2	intergenic	rs17818859-C	0.9858	7E-6	(Ordinal I)	2.5604	[1.45-3.68] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1610	chr2	134466300	134466301	rs7574116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q21.2		rs7574116-C	NR	8E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1610	chr2	134466300	134466301	rs7574116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q21.2		rs7574116-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1611	chr2	134510948	134510949	rs73007615	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	2q21.2	intergenic	rs73007615-?	0.16	3E-6		1.61	[1.32-1.96]	Affymetrix, Illumina [2530150] (imputed)	N
1611	chr2	134511569	134511570	rs1900351	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q21.2	NR	rs1900351-A	0.37	2E-8		0.0105	[0.0067-0.0143] unit decrease	NR [NR]	N
1611	chr2	134529090	134529091	rs6722456	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		2q21.2	NAP5	rs6722456-A	0.023	4E-8		0.048	[0.031-0.065] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1611	chr2	134536351	134536352	rs72843280	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q21.2	NR	rs72843280-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1611	chr2	134604835	134604836	rs7601482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q21.2		rs7601482-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1612	chr2	134638498	134638499	rs1530572	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	2q21.2	MIR3679	rs1530572-?	NR	8E-6		0.167	[0.094-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1612	chr2	134646818	134646819	rs6723127	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2q21.2		rs6723127-C	0.231659	2E-8		0.0274841	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	5E-8		0.0267141	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	2E-8		0.0272275	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	2E-8		0.0274098	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	4E-8		0.0269278	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	5E-8		0.0265301	[0.017-0.036] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134688668	134688669	rs1900349	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2q21.2		rs1900349-T	0.229279	1E-8		0.0278266	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134697204	134697204	rs3034681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	2q21.2		rs3034681-C	0.227401	3E-8		0.0275034	[0.018-0.037] unit decrease	NR [11722792] (imputed)	N
1612	chr2	134741660	134741661	rs34096939	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q21.2		rs34096939-C	0.774	3E-10		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1613	chr2	134788035	134788036	rs10928474	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q21.2	TMEM163	rs10928474-?	NR	8E-6	(phosphocreatine)	0.27479473	[0.15-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1613	chr2	134821139	134821140	rs6733440	34424336	Mobuchon L	2021-08-23	J Natl Cancer Inst	Different Pigmentation Risk Loci for High-Risk Monosomy 3 and Low-Risk Disomy 3 Uveal Melanomas.	Uveal melanoma	1,142 European ancestry cases, 882 European ancestry controls	NA	2q21.2		rs6733440-G	NR	6E-6		1.51	[1.26-1.81]	Illumina [7488175] (imputed)	N
1613	chr2	134837979	134837980	rs13410504	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (maternal effect)	1,407 Norwegian ancestry mothers	NA	2q21.2	intergenic	rs13410504-G		6E-6				NR [525577]	N
1613	chr2	134840966	134840967	rs6430491	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q21.2	MIR3679	rs6430491-G	NR	5E-10		1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
1613	chr2	134840966	134840967	rs6430491	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q21.2	MIR3679	rs6430491-G	NR	1E-9		1.0683761	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1613	chr2	134840966	134840967	rs6430491	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q21.2	NR	rs6430491-G	NR	2E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1613	chr2	134842306	134842307	rs6721549	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q21.2	NR	rs6721549-?	NR	6E-10		1.06237	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1613	chr2	134854130	134854131	rs12620761	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q21.2	MIR3679	rs12620761-C	NR	2E-6	(East Asian)	1.0905125	[1.06-1.13]	Illumina [6627481] (imputed)	N
1613	chr2	134854130	134854131	rs12620761	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q21.2	intergenic	rs12620761-T	NR	6E-6	(Chinese)	1.098901	[1.06-1.14]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1613	chr2	134864343	134864344	rs10179986	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2q21.2	intergenic	rs10179986-?		8E-6	(M)	17.78	[10.16-25.4] unit decrease	Illumina [693128]	N
1613	chr2	134870387	134870388	rs58241453	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	2q21.2	NR	rs58241453-?	NR	8E-6		0.004848	[0.0027-0.007] unit increase	Affymetrix [9658292] (imputed)	N
1614	chr2	134963861	134963862	rs1257169	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	2q21.2		rs1257169-A	0.53	2E-24		0.0903	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1614	chr2	134963891	134963892	rs1257168	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.2	NR	rs1257168-G	0.505	4E-28	(Scavenger receptor cysteine-rich type 1 protein M130, CD163.5028.59.1)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1614	chr2	134966561	134966562	rs62165726	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD163	5,368 Icelandic ancestry individuals	NA	2q21.2		rs62165726-A	0.03359	7E-27		0.555557	[0.45-0.66] unit decrease	Illumina [7506463] (imputed)	N
1614	chr2	134966561	134966562	rs62165726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q21.2		rs62165726-A	NR	1E-9		0.0363	[0.025-0.048] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1614	chr2	134966561	134966562	rs62165726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q21.2	NR	rs62165726-A	NR	6E-10		0.0389	[0.027-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
1614	chr2	134966561	134966562	rs62165726	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.2	MGAT5	rs62165726-A	0.042	2E-30	(Scavenger receptor cysteine-rich type 1 protein M130, CD163.5028.59.1)	0.69	[0.57-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
1614	chr2	134991023	134991024	rs1257192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q21.2	MGAT5	rs1257192-G	0.811932	4E-9		0.016665906	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1614	chr2	134991023	134991024	rs1257192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q21.2		rs1257192-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1615	chr2	135005276	135005277	rs2593704	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q21.2	MIR3679, MGAT5	rs2593704-?		1E-11		0.0322	[0.023-0.042] unit increase	Illumina [31500000] (imputed)	N
1615	chr2	135005276	135005277	rs2593704	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum alkaline phosphatase levels	105,030 Japanese ancestry individuals	NA	2q21.2	MIR3679, MGAT5	rs2593704-?	NR	9E-11		0.0335	[0.023-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1615	chr2	135012329	135012330	rs145506782	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q21.2	NR	rs145506782-C	0.01742	1E-8	(ALDOA)	0.3507	NR unit increase	Illumina [1671387] (imputed)	N
1615	chr2	135014077	135014078	rs2442046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q21.2		rs2442046-C	NR	2E-39		0.0313	[0.027-0.036] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1615	chr2	135014077	135014078	rs2442046	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q21.2	MGAT5	rs2442046-G	0.23	2E-38		12.9	z-score increase	Affymetrix [4311822] (imputed)	N
1615	chr2	135014115	135014116	rs2460382	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	ST2 protein levels	21,758 European ancestry individuals	9,173 individuals	2q21.2		rs2460382-A	0.77	1E-14		0.0714	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1615	chr2	135014125	135014126	rs2460383	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q21.2	MGAT5	rs2460383-T	0.229999	7E-38		0.00356066	[0.003-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
1615	chr2	135015346	135015347	rs1257220	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	2q21.2	MGAT5	rs1257220-A	0.27	3E-9	(DG11, women)	0.22038873	[0.15-0.29] (zscore) increase	Illumina [NR]	N
1615	chr2	135015346	135015347	rs1257220	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	2q21.2	MGAT5	rs1257220-A	0.26	3E-9	(TA, women)	0.2214021	[0.15-0.29] (zscore) increase	Illumina [NR]	N
1615	chr2	135015346	135015347	rs1257220	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	2q21.2	MGAT5	rs1257220-A	0.26	2E-10	(TA)	0.18596183	[0.13-0.24] (zscore) increase	Illumina [NR]	N
1615	chr2	135015346	135015347	rs1257220	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	2q21.2	MGAT5	rs1257220-A	0.26	2E-10	(DG11)	0.18739487	[0.13-0.25] (zscore) increase	Illumina [NR]	N
1615	chr2	135016617	135016618	rs1257221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	2q21.2		rs1257221-C	0.750232	8E-13		0.0325556	[0.024-0.041] unit decrease	Illumina [13474352] (imputed)	N
1615	chr2	135062597	135062598	rs1439112	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or systemic lupus erythematosus	741 European ancestry marginal zone lymphoma cases, 7,219 European ancestry systemic lupus erythematosus cases, 21,982 European ancestry controls	NA	2q21.3	MGAT5	rs1439112-?	NR	3E-8		1.1698643		Illumina [~ 600000] (imputed)	N
1615	chr2	135062597	135062598	rs1439112	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or systemic lupus erythematosus	2,492 European ancestry chronic lymphocytic leukemia cases, 7,219 European ancestry systemic lupus erythematosus cases, 23,144 European ancestry controls	NA	2q21.3	MGAT5	rs1439112-?	NR	7E-9		1.1409012		Illumina [~ 600000] (imputed)	N
1615	chr2	135066475	135066476	rs11887156	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	2q21.3	MGAT5	rs11887156-?	NR	5E-7		1.1904762	[1.11-1.28]	Illumina [at least 5000000] (imputed)	N
1615	chr2	135068793	135068794	rs4953911	20117844	Brynedal B	2010-02-01	J Neuroimmunol	MGAT5 alters the severity of multiple sclerosis.	Multiple sclerosis (severity)	1,040 European ancestry cases	873 European ancestry cases	2q21.3	MGAT5	rs4953911-T	0.36	2E-7				Affymetrix [105035]	N
1615	chr2	135072759	135072760	rs570561789	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	2q21.3	MGAT5	rs570561789-G	NR	1E-11		0.581	[0.41-0.75] unit increase	NR [11024754] (imputed)	N
1616	chr2	135143286	135143287	rs12467609	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q21.3	MGAT5	rs12467609-T	0.64	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1616	chr2	135208270	135208271	rs78170588	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q21.3	MGAT5	rs78170588-A	0.993	3E-6	(AA)	0.096	unit increase	Illumina [NR] (imputed)	N
1616	chr2	135214569	135214570	rs10179686	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Large artery stroke	2,167 cases, 49,159 controls	NA	2q21.3	TMEM163	rs10179686-T	NR	8E-6		1.69	[1.34-2.13]	Affymetrix, Illumina [~ 2400000] (imputed)	N
1616	chr2	135247222	135247223	rs57504074	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x air pollution interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	2q21.3	NR	rs57504074-?	NR	3E-7				NR [6212909] (imputed)	N
1616	chr2	135263080	135263081	rs56131490	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q21.3	TMEM163	rs56131490-G	0.850526	2E-8		0.0149621	[0.0097-0.0202] unit decrease	Affymetrix [NR] (imputed)	N
1617	chr2	135281132	135281133	rs7590091	33625064	Cindi Z	2021-02-17	J Acquir Immune Defic Syndr	Genetic Associations with Weight Gain among South Africans who Initiated Dolutegravir- and Tenofovir-containing Regimens.	Response to dolutegravir (body weight gain)	314 Black South African individuals	NA	2q21.3	TMEM163	rs7590091-?	NR	4E-8				Illumina [NR] (imputed)	N
1617	chr2	135283435	135283436	rs592037	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q21.3	NR	rs592037-C	0.345048	1E-11		0.013337	[0.0095-0.0172] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1617	chr2	135283653	135283654	rs565728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q21.3	TMEM163	rs565728-T	0.337319	6E-9		0.013768545	[0.0091-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1617	chr2	135283653	135283654	rs565728	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q21.3	NR	rs565728-T	0.344239	1E-10		0.012723	[0.0089-0.0166] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1617	chr2	135294689	135294690	rs143184943	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q21.3	TMEM163	rs143184943-G	NR	7E-7		0.7203051	[0.45-0.99] unit decrease	Illumina [> 6200000] (imputed)	N
1617	chr2	135300860	135300861	rs487404	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q21.3	Intergenic	rs487404-A	0.4153	6E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1617	chr2	135300860	135300861	rs487404	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q21.3	Intergenic	rs487404-A	0.4153	2E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1617	chr2	135340839	135340840	rs842361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842361-?	NR	2E-8				NR [NR]	N
1617	chr2	135340839	135340840	rs842361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842361-?	NR	3E-8				NR [NR]	N
1617	chr2	135340839	135340840	rs842361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842361-?	NR	4E-8				NR [NR]	N
1617	chr2	135340839	135340840	rs842361	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842361-?	NR	3E-8				NR [NR]	N
1617	chr2	135341199	135341200	rs859767	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q21.3		rs859767-G	NR	9E-16		0.162847	[0.12-0.2] unit decrease	NR [2787054] (imputed)	N
1617	chr2	135341199	135341200	rs859767	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	2q21.3		rs859767-G	NR	2E-9		0.139305	[0.094-0.185] unit decrease	NR [5054572] (imputed)	N
1617	chr2	135341199	135341200	rs859767	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q21.3	NR	rs859767-A	0.569	8E-7		0.017816983	[0.011-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
1617	chr2	135342451	135342452	rs842349	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q21.3		rs842349-T	NR	2E-9		0.23632	[0.16-0.31] unit decrease	NR [5275424] (imputed)	N
1617	chr2	135342451	135342452	rs842349	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842349-?	NR	4E-9				NR [NR]	N
1617	chr2	135342451	135342452	rs842349	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q21.3		rs842349-?	NR	2E-8				NR [NR]	N
1617	chr2	135356284	135356285	rs1818613	33574088	Mocci E	2021-02-11	Cancer Res	Smoking modifies pancreatic cancer risk loci on 2q21.3.	Pancreatic ductal adenocarcinoma x smoking interaction	7,937  European ancestry cases, 11,774 European ancestry controls	NA	2q21.3	TMEM163	rs1818613-T	NR	3E-9				Illumina [6769447] (imputed)	N
1617	chr2	135372950	135372951	rs35564151	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs35564151-G	NR	5E-7		5.045873	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1617	chr2	135372950	135372951	rs35564151	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs35564151-G	NR	9E-8		5.354951	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1617	chr2	135372950	135372951	rs35564151	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs35564151-G	NR	5E-7		5.045873	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135407408	135407409	rs6739706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q21.3		rs6739706-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1618	chr2	135407408	135407409	rs6739706	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q21.3	TMEM163	rs6739706-A	0.389	2E-14		1.063	NR	Affymetrix [9154080] (imputed)	N
1618	chr2	135419793	135419794	rs7564273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q21.3		rs7564273-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1618	chr2	135426617	135426618	rs4954158	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q21.3		rs4954158-T	0.339	2E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1618	chr2	135430708	135430709	rs6745983	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	2q21.3	TMEM163	rs6745983-G	0.490453	7E-13				Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135430708	135430709	rs6745983	29615537	Kulminski AM	2018-03-01	Aging (Albany NY)	Strong impact of natural-selection-free heterogeneity in genetics of age-related phenotypes.	Hematocrit	up to 33,431 European ancestry individuals	NA	2q21.3	TMEM163	rs6745983-C	0.4955	4E-8		0.076976396	[0.049-0.105] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1618	chr2	135438788	135438789	rs4954162	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2q21.3	TMEM163	rs4954162-A	0.1642	2E-8		0.0746	[0.049-0.1] unit decrease	NR [7784415] (imputed)	N
1618	chr2	135442492	135442492	rs772389453	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q21.3	NR	rs772389453-C	0.86226	3E-9		0.00710671	[0.0046-0.0096] unit increase	Affymetrix [16582909] (imputed)	N
1618	chr2	135442492	135442492	rs772389453	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q21.3	NR	rs772389453-C	0.86226	2E-6		0.00648063	[0.0037-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1618	chr2	135451301	135451302	rs10928512	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		2q21.3		rs10928512-G	0.47	4E-8		1.55	[1.00-2.10] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1618	chr2	135464615	135464616	rs57891859	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	2q21.3	NR	rs57891859-A	0.3833	3E-7		1.2994	[0.8-1.8] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135464615	135464616	rs57891859	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2q21.3	TMEM163	rs57891859-A	0.7185	5E-14		0.0807	[0.06-0.102] unit increase	NR [7784415] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6723108-T	NR	1E-8		5.726708	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6723108-T	NR	8E-10		6.1510186	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6723108-T	NR	8E-11		6.4982767	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6723108-T	NR	8E-10		6.1510186	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6723108-T	NR	2E-9		5.9665174	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1618	chr2	135479979	135479980	rs6723108	23209189	Tabassum R	2012-12-03	Diabetes	Genome-wide association study for type 2 diabetes in Indians identifies a new susceptibility locus at 2q21.	Type 2 diabetes	1,101 Indo-European ancestry cases, 1,027 Indo-European ancestry controls	3,607 Indo-European ancestry cases, 2,924 Indo-European ancestry controls, 1,184 Dravidian ancestry cases, 1,061 Dravidian ancestry controls, 11,285 European ancestry cases, 11,285 European ancestry controls	2q21.3	TMEM163	rs6723108-T	0.86	7E-8	(All South Asians)	1.27	[1.17-1.39]	Illumina [536420]	N
1618	chr2	135483380	135483381	rs3739034	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	2q21.3	NR	rs3739034-?		1E-6	(genus_Coprococcus)	0.772689	[0.51-1.04] unit increase	Affymetrix [211319]	N
1618	chr2	135488583	135488584	rs2212723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q21.3	Intergenic	rs2212723-C	0.1891	6E-16	(MTAG)	0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1618	chr2	135488583	135488584	rs2212723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q21.3	Intergenic	rs2212723-G	0.8109	1E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1618	chr2	135499235	135499236	rs6727396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q21.3		rs6727396-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1618	chr2	135516996	135516997	rs62171406	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q21.3	TMEM163	rs62171406-G	0.103	2E-7		0.64	[0.4-0.88] unit increase	Illumina [9469131] (imputed)	N
1618	chr2	135516996	135516997	rs62171406	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	2q21.3	TMEM163	rs62171406-G	0.10289	2E-9		0.162687	[0.11-0.22] unit increase	Illumina [9469131] (imputed)	N
1619	chr2	135531702	135531703	rs4954174	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q21.3	Intergenic	rs4954174-A	0.8103	4E-13	(MTAG)	0.0153	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1619	chr2	135531702	135531703	rs4954174	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q21.3	Intergenic	rs4954174-A	0.8463	2E-8	(MTAG)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1619	chr2	135539966	135539967	rs6430538	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	2q21.3	CCNT2-AS1	rs6430538-T		1E-13		0.1094	[0.081-0.138] unit decrease	Illumina [NR]	N
1619	chr2	135539966	135539967	rs6430538	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	2q21.3	TMEM163, CCNT2	rs6430538-C	0.55	8E-24		1.1235955	[1.1-1.15]	Illumina [11933700] (imputed)	N
1619	chr2	135539966	135539967	rs6430538	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	2q21.3	ACMSD, TMEM163	rs6430538-C	0.57	9E-20		1.1429	[1.11-1.17]	Illumina [7893274] (imputed)	N
1619	chr2	135539966	135539967	rs6430538	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	2q21.3	intergenic	rs6430538-?	NR	2E-7		1.15	[NR]	Illumina [2500000] (imputed)	N
1619	chr2	135592380	135592381	rs6710823	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	2q21.3	ACMSD	rs6710823-G	0.46	7E-9		1.1	[1.06-1.14]	Illumina [7689524] (imputed)	N
1619	chr2	135597627	135597628	rs10496731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q21.3		rs10496731-G	NR	1E-11		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1619	chr2	135597627	135597628	rs10496731	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q21.3		rs10496731-T	0.63	3E-15				NR [NR] (imputed)	N
1619	chr2	135597627	135597628	rs10496731	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2q21.3		rs10496731-T	0.63	3E-12		0.013	mmol/L decrease	NR [NR] (imputed)	N
1619	chr2	135597627	135597628	rs10496731	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q21.3		rs10496731-T	0.63	3E-10		0.01	% increase	NR [NR] (imputed)	N
1619	chr2	135597627	135597628	rs10496731	33541420	Bone WP	2021-02-04	Alzheimers Res Ther	Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits.	Alzheimer's disease or body fat percentage (pleiotropy)	100,716 individuals with body fat percentage measurements, 71,880 Alzheimer's disease cases, 383,378 controls	NA	2q21.3		rs10496731-G	0.48	2E-8				NR [NR]	N
1619	chr2	135599875	135599876	rs10198552	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q21.3	ACMSD	rs10198552-G	0.025	7E-7	(AST )	0.04	[NR] U/L increase	Illumina [899892]	N
1619	chr2	135607853	135607854	rs10432370	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q21.3	ACMSD	rs10432370-C	0.571737	8E-11		0.0140846	[0.0098-0.0183] unit decrease	Affymetrix [NR] (imputed)	N
1619	chr2	135616345	135616346	rs6430549	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	2q21.3	TMEM163, ACMSD	rs6430549-A	NR	2E-11		0.097	[0.066-0.128] percentage increase	NR [2500000] (imputed)	N
1619	chr2	135629438	135629439	rs6711390	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q21.3	ACMSD	rs6711390-T	0.3604	6E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1619	chr2	135631399	135631400	rs6430553	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q21.3	ACMSD	rs6430553-T	0.39	6E-12	(X-12095--N1-methyl-3-pyridone-4-carboxamide)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1619	chr2	135632980	135632981	rs4954192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q21.3		rs4954192-T	NR	2E-15		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1619	chr2	135632980	135632981	rs4954192	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q21.3	ACMSD	rs4954192-C	0.626527	6E-12		0.0147212	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1619	chr2	135632980	135632981	rs4954192	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	2q21.3	ACMSD	rs4954192-T	0.43	9E-9		0.033	[0.021-0.045] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1619	chr2	135632980	135632981	rs4954192	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q21.3	CCNT2-AS1	rs4954192-C	0.6128	8E-12		0.1225	[0.087-0.158] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1619	chr2	135632980	135632981	rs4954192	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q21.3	ACMSD, TMEM163, CCNT2	rs4954192-A	0.41	6E-7		2.36	[1.67-3.34]	Illumina [1556551]	N
1619	chr2	135634580	135634581	rs6738113	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2q21.3	CCNT2-AS1	rs6738113-A	0.36	5E-11		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1619	chr2	135638043	135638044	rs12473839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q21.3		rs12473839-T	NR	3E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1619	chr2	135638043	135638044	rs12473839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q21.3	CCNT2-AS1, ACMSD	rs12473839-T	0.367199	3E-11		0.015125524	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1619	chr2	135638043	135638044	rs12473839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs12473839-T	0.440195	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
1619	chr2	135638043	135638044	rs12473839	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q21.3	NR	rs12473839-T	0.379913	2E-16		0.015746	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1619	chr2	135638043	135638044	rs12473839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q21.3		rs12473839-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1619	chr2	135650765	135650766	rs6714498	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q21.3		rs6714498-T	0.6283	8E-9		0.1600947	[0.11-0.21] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1619	chr2	135650765	135650766	rs6714498	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q21.3		rs6714498-T	0.6288	2E-9		0.09926394	[0.068-0.131] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1620	chr2	135672186	135672187	rs62168891	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q21.3	CCNT2-AS1	rs62168891-T	0.4032	1E-14		0.0186	[0.014-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1620	chr2	135672186	135672187	rs62168891	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q21.3	CCNT2-AS1	rs62168891-T	0.4032	5E-14		0.0181	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
1620	chr2	135674369	135674370	rs12463645	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	2q21.3	AC016725.4	rs12463645-C	0.364349	2E-8		0.046416946	[0.03-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
1620	chr2	135691724	135691725	rs17698630	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2q21.3	CCNT2	rs17698630-A	NR	3E-9		0.00967021	[0.0065-0.0129] unit decrease	Affymetrix [10061374] (imputed)	N
1620	chr2	135697796	135697797	rs10198975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q21.3		rs10198975-T	NR	4E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1620	chr2	135697796	135697797	rs10198975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q21.3		rs10198975-T	NR	2E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1620	chr2	135697924	135697924	rs145563728	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q21.3		rs145563728-TGAAAAAATTAA	NR	1E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1620	chr2	135705557	135705558	rs1979033	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1979033-A	NR	5E-7		5.0357485	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1620	chr2	135705557	135705558	rs1979033	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1979033-A	NR	1E-10		6.459147	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1620	chr2	135705557	135705558	rs1979033	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1979033-A	NR	2E-11		6.679641	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1620	chr2	135705557	135705558	rs1979033	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1979033-A	NR	1E-10		6.459147	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1620	chr2	135705557	135705558	rs1979033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2q21.3		rs1979033-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1620	chr2	135717887	135717888	rs569682019	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2q21.3	CCNT2	rs569682019-T	0.9973	8E-6		0.6504	[0.37-0.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1620	chr2	135745128	135745129	rs16831235	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2q21.3	Intergenic	rs16831235-?	NR	3E-6		1.459	[NR]	Affymetrix [492217] (imputed)	N
1620	chr2	135753521	135753521	rs113279230	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	2q21.3		rs113279230-C	0.826002	4E-8		0.0285919	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
1620	chr2	135755118	135755119	rs61134960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q21.3		rs61134960-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1620	chr2	135755628	135755629	rs1530559	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	2q21.3	YSK4	rs1530559-A	0.553506	6E-6		0.011831	[0.0067-0.0169] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1620	chr2	135755628	135755629	rs1530559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs1530559-G	0.529834	6E-11				Affymetrix, Illumina [24653286] (imputed)	N
1620	chr2	135755628	135755629	rs1530559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs1530559-G	0.526941	9E-10				Affymetrix, Illumina [24558453] (imputed)	N
1620	chr2	135771973	135771974	rs10187402	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs10187402-G	NR	2E-11		6.734089	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135803424	135803425	rs4954218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q21.3		rs4954218-T	NR	2E-12		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1621	chr2	135803424	135803425	rs4954218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q21.3	NR	rs4954218-T	NR	9E-10		0.0166	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1621	chr2	135803424	135803425	rs4954218	21979947	Li X	2011-10-06	Hum Mol Genet	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	2q21.3	RAB3GAP1	rs4954218-?	NR	1E-9		1.61		Illumina [~ 290000]	N
1621	chr2	135837905	135837906	rs7570971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Turicibacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7570971-A	0.42247	4E-11		0.0910102	[0.064-0.118] unit decrease	Illumina [7980478] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Turicibacter abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7570971-A	0.42247	2E-10		0.0929224	[0.064-0.121] unit decrease	Illumina [7980478] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Phocea massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7570971-A	0.42247	2E-10		0.0551303	[0.038-0.072] unit decrease	Illumina [7980478] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Leuconostoc mesenteroides abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7570971-A	0.42247	4E-8		0.0755309	[0.049-0.103] unit decrease	Illumina [7980478] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Haloplasmatales abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7570971-A	0.42247	9E-11		0.0806449	[0.056-0.105] unit decrease	Illumina [7980478] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7570971-A	NR	1E-14		7.695133	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7570971-A	NR	3E-19		8.9873905	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7570971-A	NR	2E-19		9.012537	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7570971-A	NR	3E-19		8.9873905	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q21.3	RAB3GAP1	rs7570971-A	0.368523472306345	1E-6	(G_Bifidobacterium_RNT)	0.126428	[0.076-0.177] unit increase	Illumina [7711310] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q21.3	RAB3GAP1	rs7570971-A	NR	7E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q21.3	RAB3GAP1	rs7570971-A	NR	6E-13				Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q21.3	RAB3GAP1	rs7570971-A	NR	9E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q21.3	RAB3GAP1	rs7570971-A	NR	1E-13				Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q21.3	RAB3GAP1	rs7570971-A	NR	7E-10		1.148	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q21.3	RAB3GAP1	rs7570971-A	NR	1E-6	(EA)	0.993	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q21.3	RAB3GAP1	rs7570971-A	NR	2E-8		1.301	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q21.3	RAB3GAP1	rs7570971-A	NR	8E-6				Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q21.3	NR	rs7570971-C	NR	2E-8		0.015	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q21.3	TMEM163, ACMSD, MAP3K19, ZRANB3, LOC100129961, CCNT2, R3HDM1	rs7570971-A	0.351677651692037	5E-9		0.017575238	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q21.3	RAB3GAP1	rs7570971-C	0.64	2E-6	(EA)	0.017	[0.0098-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1621	chr2	135837905	135837906	rs7570971	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q21.3	RAB3GAP1	rs7570971-C	0.627	1E-6		0.016	[0.0099-0.0229] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1621	chr2	135837905	135837906	rs7570971	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q21.3	RAB3GAP1	rs7570971-A	0.33	8E-45	(1,5-anhydroglucitol (1,5-AG))	0.037	[0.031-0.043] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q21.3	RAB3GAP1	rs7570971-A	0.35	1E-13		0.03	[NR] unit increase	NR [NR] (imputed)	N
1621	chr2	135837905	135837906	rs7570971	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	2q21.3	RAB3GAP1	rs7570971-T	0.31	1E-8		1.18	[0.75-1.61] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1621	chr2	135907087	135907088	rs6730157	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6730157-G	NR	2E-19		8.992039	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1621	chr2	135907087	135907088	rs6730157	23593153	Huertas-Vazquez A	2013-04-04	PLoS One	Novel loci associated with increased risk of sudden cardiac death in the context of coronary artery disease.	Sudden cardiac arrest in coronary artery disease	948 European ancestry cases, 3,050 European ancestry controls	NA	2q21.3	RAB3GAP1	rs6730157-G	0.26	5E-12		1.6	[1.48-1.72]	Illumina [119117]	N
1622	chr2	135954796	135954797	rs1375131	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Leuconostoc abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs1375131-C	0.41852	4E-8		0.06828	[0.044-0.093] unit decrease	Illumina [7980478] (imputed)	N
1622	chr2	135954796	135954797	rs1375131	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1375131-C	NR	4E-13		7.2503195	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1622	chr2	135954796	135954797	rs1375131	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1375131-C	NR	4E-18		8.680507	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1622	chr2	135954796	135954797	rs1375131	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1375131-C	NR	1E-18		8.832676	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1622	chr2	135954796	135954797	rs1375131	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1375131-C	NR	4E-18		8.680507	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1622	chr2	135954796	135954797	rs1375131	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q21.3	Intergenic	rs1375131-T	NR	2E-9		0.0345404	[0.023-0.046] unit increase	Illumina [13520550] (imputed)	N
1622	chr2	136002499	136002500	rs1900741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q21.3		rs1900741-T	0.856408	2E-8		0.0159475	[0.01-0.022] unit increase	Illumina [13479295] (imputed)	N
1622	chr2	136019728	136019729	rs1465146591	31324766	Adeyemo AA	2019-07-19	Nat Commun	ZRANB3 is an African-specific type 2 diabetes locus associated with beta-cell mass and insulin response.	Type 2 diabetes	2,342 Sub-Saharan African ancestry cases, 2,889 Sub-Saharan African ancestry controls	1,602 South African Zulu ancestry cases, 976 South African Zulu ancestry controls	2q21.3	ZRANB3	rs1465146591-A	0.069	7E-9		0.652	[0.43-0.87] unit decrease	Affymetrix, Illumina [~ 18000000] (imputed)	N
1622	chr2	136043943	136043944	rs13023281	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs13023281-C	NR	2E-17		8.521041	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1623	chr2	136068889	136068890	rs7572152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q21.3		rs7572152-G	NR	1E-13		0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1561277-A	NR	4E-10		6.2386727	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1561277-A	NR	1E-14		7.707961	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1561277-A	NR	2E-14		7.6791472	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1561277-A	NR	1E-14		7.707961	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q21.3	NR	rs1561277-A	NR	2E-12		0.021	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2q21.3	NR	rs1561277-A	NR	2E-9		0.0188	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q21.3	ZRANB3	rs1561277-A	0.3354	6E-9	(EA)	0.0239	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1623	chr2	136092060	136092061	rs1561277	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q21.3	ZRANB3	rs1561277-A	0.3354	2E-6	(EA,women)	0.0254	[0.015-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1623	chr2	136098560	136098560	rs151022760	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q21.3	ZRANB3	rs151022760-?	NR	4E-12		0.0203	[0.015-0.025] unit increase	Affymetrix [5701386] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-81 sp000435795 abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	2E-18		0.151222	[0.12-0.19] unit decrease	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium ruminantium abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	5E-29		0.149826	[0.12-0.18] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium pseudocatenulatum abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	5E-19		0.153594	[0.12-0.19] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium longum abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	9E-18		0.13099	[0.1-0.16] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium kashiwanohense abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	3E-20		0.134116	[0.11-0.16] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium infantis abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	1E-22		0.111764	[0.089-0.134] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium catenulatum abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	7E-19		0.168503	[0.13-0.21] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium breve abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	2E-28		0.117637	[0.097-0.139] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium angulatum abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	2E-22		0.136898	[0.11-0.16] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	3E-32		0.179917	[0.15-0.21] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Actinomycetales abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	7E-33		0.123463	[0.1-0.14] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Actinobacteriota abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	5E-23		0.050729	[0.041-0.061] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136138626	136138627	rs3940549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Actinobacteria abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs3940549-G	0.421891	6E-36		0.0856809	[0.072-0.099] unit increase	Illumina [7980478] (imputed)	N
1623	chr2	136176539	136176540	rs13384711	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q21.3	ZRANB3	rs13384711-T	NR	2E-9		0.0350246	[0.024-0.047] unit increase	Illumina [13520550] (imputed)	N
1623	chr2	136176928	136176929	rs147205833	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2q21.3	ZRANB3	rs147205833-A	0.9956	8E-6		0.6094	[0.34-0.88] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1623	chr2	136182483	136182484	rs6733706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q21.3		rs6733706-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1624	chr2	136191313	136191314	rs10209482	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs10209482-C	NR	2E-9		6.037841	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1624	chr2	136228886	136228887	rs7605229	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7605229-T	NR	3E-9		5.9449553	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1624	chr2	136228886	136228887	rs7605229	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7605229-T	NR	1E-8		5.719356	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1624	chr2	136228886	136228887	rs7605229	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs7605229-T	NR	3E-9		5.9449553	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1624	chr2	136292424	136292425	rs6745996	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs6745996-G	NR	6E-8		5.422996	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136322675	136322676	rs6759321	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q21.3	R3HDM1	rs6759321-T	0.2402	2E-12		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1625	chr2	136322675	136322676	rs6759321	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2q21.3	R3HDM1	rs6759321-T	0.24	3E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
1625	chr2	136328889	136328890	rs56369224	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Phocea abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs56369224-T	0.419715	4E-11		0.0652409	[0.046-0.085] unit decrease	Illumina [7980478] (imputed)	N
1625	chr2	136328889	136328890	rs56369224	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Negativibacillus sp000435195 abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs56369224-T	0.419715	6E-10		0.0904894	[0.062-0.119] unit decrease	Illumina [7980478] (imputed)	N
1625	chr2	136351403	136351404	rs147713032	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	2q21.3		rs147713032-A	0.9762	4E-11		0.245	[0.17-0.32] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136376514	136376515	rs4954272	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q21.3	R3HDM1	rs4954272-?	NR	1E-11		0.022532158	[0.016-0.029] unit decrease	Illumina [27896057] (imputed)	N
1625	chr2	136381347	136381348	rs12465802	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs12465802-A	NR	2E-18		8.773549	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136381347	136381348	rs12465802	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q21.3	LCT	rs12465802-A	0.46	9E-18	(lactose)	0.274	[0.21-0.34] unit increase	Illumina [7750367] (imputed)	N
1625	chr2	136381347	136381348	rs12465802	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.3	NR	rs12465802-A	0.282	3E-218	(Lactase-phlorizin hydrolase, LCT.9017.58.3)	0.78	[0.74-0.82] unit decrease	Affymetrix [10572788] (imputed)	N
1625	chr2	136381347	136381348	rs12465802	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q21.3	R3HDM1	rs12465802-G	NR	2E-10		0.0368262	[0.026-0.048] unit increase	Illumina [13520550] (imputed)	N
1625	chr2	136403748	136403749	rs13413639	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	2q21.3	PCCB	rs13413639-?	NR	1E-9		1.04	[0.64-1.44] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1625	chr2	136404462	136404462	rs371608673	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q21.3	NR	rs371608673-I	0.196893	3E-10		0.016534	[0.011-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales.f_Bifidobacteriaceae.g_Bifidobacterium.s_Bifidobacterium_longum)	7,738 European ancestry individuals	NA	2q21.3		rs1446585-A	0.7718797	3E-8		0.11563392	[0.075-0.157] unit increase	Illumina [5584686] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Holdemania sp900120005 abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs1446585-G	0.352023	3E-8		0.08429	[0.054-0.114] unit decrease	Illumina [7980478] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q21.3		rs1446585-G	NR	4E-13		0.0198	[0.015-0.025] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q21.3		rs1446585-G	NR	1E-8		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	2q21.3	LCT	rs1446585-G	0.399	3E-8		1.07	[1.04-1.10]	Affymetrix, Illumina [11947015] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	2q21.3	LCT	rs1446585-G	0.399	8E-6		1.07	[1.04-1.11]	Affymetrix, Illumina [11353757] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q21.3	R3HDM1	rs1446585-A	0.755704	1E-14		0.0167703	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1625	chr2	136407478	136407479	rs1446585	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q21.3	R3HDM1	rs1446585-A	0.75581	1E-16		0.018597	[0.014-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1625	chr2	136413649	136413650	rs36084664	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs36084664-G	NR	4E-13		7.2598033	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136413649	136413650	rs36084664	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs36084664-G	NR	1E-18		8.793783	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136413649	136413650	rs36084664	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs36084664-G	NR	1E-18		8.793783	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136413649	136413650	rs36084664	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs36084664-G	NR	3E-19		8.976131	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1625	chr2	136421322	136421323	rs1374329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q21.3	R3HDM1	rs1374329-G	0.181203	8E-11		0.01860134	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1625	chr2	136429365	136429366	rs62168795	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA3855 sp900316885 abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs62168795-C	0.418166	4E-19		0.054988	[0.043-0.067] unit increase	Illumina [7980478] (imputed)	N
1625	chr2	136429365	136429366	rs62168795	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs62168795-C	0.418166	3E-28		0.159607	[0.13-0.19] unit increase	Illumina [7980478] (imputed)	N
1626	chr2	136455599	136455600	rs71348714	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs71348714-G	NR	6E-12		6.870594	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136460291	136460292	rs2164917	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q21.3		rs2164917-C	0.99994	6E-8		2.2624	[1.44-3.08] unit increase	Affymetrix [15580782] (imputed)	N
1626	chr2	136485095	136485096	rs7560412	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q21.3	NR	rs7560412-C	NR	2E-6	(GEE model)	0.68478	[0.4-0.97] unit decrease	NR [NR] (imputed)	N
1626	chr2	136485656	136485657	rs1347767	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Neutrophil count	up to 7,526 African ancestry individuals	NA	2q21.3		rs1347767-C	0.152	7E-11		0.221782	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
1626	chr2	136485656	136485657	rs1347767	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Neutrophil count	1,415 Sub-Saharan African ancestry individuals	NA	2q21.3	R3HDM1	rs1347767-?	NR	8E-12				Illumina [20594536] (imputed)	N
1626	chr2	136490730	136490731	rs77248969	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q21.3	R3HDM1, UBXN4	rs77248969-G	0.8884	5E-9		1.0338607		Affymetrix [11880941] (imputed)	N
1626	chr2	136495031	136495032	rs4954563	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q21.3		rs4954563-A	0.99994	6E-8		2.2624	[1.44-3.08] unit increase	Affymetrix [15580782] (imputed)	N
1626	chr2	136503156	136503157	rs1438304	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs1438304-A	NR	4E-8		5.4769955	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136506926	136506927	rs6430585	21979947	Li X	2011-10-06	Hum Mol Genet	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	2q21.3	UBXD2	rs6430585-?	NR	1E-6		1.39		Illumina [~ 290000]	N
1626	chr2	136511291	136511292	rs3217451	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	2q21.3	NR	rs3217451-AT	0.87	7E-7		0.9	[0.87-0.94]	NR [NR] (imputed)	N
1626	chr2	136511291	136511292	rs3217451	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	2q21.3	NR	rs3217451-AT	0.87	5E-7		0.89	[0.85-0.93]	NR [NR] (imputed)	N
1626	chr2	136516127	136516128	rs4954604	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	16,201 African American or Afro-Caribbean individuals	NA	2q21.3		rs4954604-T	0.0857	5E-7		0.1449	[0.088-0.202] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136516747	136516748	rs12616520	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs12616520-A	NR	1E-9		6.062554	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136516747	136516748	rs12616520	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs12616520-A	NR	1E-9		6.062554	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136516747	136516748	rs12616520	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs12616520-A	NR	3E-11		6.6483207	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1626	chr2	136522940	136522941	rs28453840	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	2q21.3	RAB3GAP1	rs28453840-G	0.21	3E-9		0.046	[0.03-0.062] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1626	chr2	136545298	136545299	rs16832011	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	8,866 European ancestry individuals	NA	2q21.3	LCT	rs16832011-A	NR	3E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
1626	chr2	136553181	136553182	rs1030766	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.3	NR	rs1030766-T	0.911	2E-69	(Lactase-phlorizin hydrolase, LCT.9017.58.3)	0.85	[0.75-0.95] unit increase	Affymetrix [10572788] (imputed)	N
1626	chr2	136555658	136555659	rs2322659	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	2q21.3	LCT	rs2322659-T	0.2356	2E-9	(EA)	6.024	unit increase	Illumina [179215]	N
1626	chr2	136567153	136567154	rs116951780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q21.3	LCT	rs116951780-T	0.001502	1E-11		0.19539523	[0.14-0.25] unit increase	Affymetrix [93095623] (imputed)	N
1626	chr2	136575299	136575300	rs35940156	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	2q21.3	NR	rs35940156-?	NR	7E-11		0.08236889	[0.058-0.107] unit increase	Illumina [30613845] (imputed)	N
1626	chr2	136576362	136576363	rs112347136	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		2q21.3	NR	rs112347136-C	0.9893286	9E-6		1.4199322	[1.65-1.42]	Affymetrix [16499239] (imputed)	N
1627	chr2	136580286	136580287	rs2164210	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Plasmacytoid Dendritic Cell Absolute Count	3,374 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q21.3		rs2164210-C	0.32387	2E-13		0.1937	[0.14-0.25] unit increase	Illumina [18332528] (imputed)	N
1627	chr2	136594438	136594439	rs35837297	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	White blood cell count	14,743 African American individuals, 6,762 African ancestry individuals, 21,034 Hispanic/Latino individuals	6,743 African American individuals	2q21.3	NR	rs35837297-C	NR	2E-12	(African)	0.223	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
1627	chr2	136594438	136594439	rs35837297	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	White blood cell count	8,825 African American individuals, 18,251 Hispanic/Latino individuals, 543 Asian ancestry individuals, 606 Native American ancestry individuals, 383 individuals	NA	2q21.3	NR	rs35837297-?	NR	1E-11		0.08397265	[0.06-0.108] unit increase	Illumina [30613845] (imputed)	N
1627	chr2	136595280	136595281	rs370868556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q21.3	LCT	rs370868556-G	1.64999999999971E-4	5E-12		0.8229824	[0.59-1.06] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr2	136595280	136595281	rs370868556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q21.3	LCT	rs370868556-G	1.64000000000053E-4	2E-11		0.80054444	[0.57-1.04] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr2	136595280	136595281	rs370868556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q21.3	LCT	rs370868556-G	1.64999999999971E-4	1E-15		0.9553367	[0.72-1.19] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr2	136595280	136595281	rs370868556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q21.3	NR	rs370868556-C	0.999835	9E-12		0.78275	[0.56-1.01] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1627	chr2	136595280	136595281	rs370868556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q21.3	NR	rs370868556-C	0.999835	3E-15		0.915965	[0.69-1.14] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1627	chr2	136596866	136596867	rs6742283	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q21.3	LCT, MCM6	rs6742283-G	0.8	2E-8		5.61	z-score increase	Affymetrix [4314223] (imputed)	N
1627	chr2	136602905	136602906	rs4988267	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q21.3		rs4988267-A	0.99996	3E-6		2.5219	[1.47-3.58] unit increase	Affymetrix [15580782] (imputed)	N
1627	chr2	136603365	136603366	rs3769005	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q21.3	NR	rs3769005-C	0.2	2E-9		0.0134	[0.009-0.0178] unit decrease	NR [NR]	N
1627	chr2	136608645	136608646	rs4988235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q21.3		rs4988235-G	0.264175	1E-9		0.0269591	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q21.3		rs4988235-G	0.264175	2E-8		0.0248042	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	2q21.3		rs4988235-G	0.264183	1E-10		0.0284728	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	2q21.3		rs4988235-G	0.264157	6E-10		0.0290161	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Turicibacter sp001543345 abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	1E-10		0.0947	[0.066-0.124] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B ruminis abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	3E-10		0.0818721	[0.056-0.107] unit increase	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lactobacillus B abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	9E-9		0.0652691	[0.043-0.088] unit increase	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillales abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	2E-8		0.0209247	[0.014-0.028] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Brevibacillaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	1E-8		0.0231996	[0.015-0.031] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium bifidum abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	9E-17		0.166364	[0.13-0.21] unit increase	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacilli A abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs4988235-G	0.414723	2E-8		0.0100068	[0.0065-0.0135] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and LDL-C (pairwise)	495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q21.3	MCM6	rs4988235-A	0.508	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	2q21.3	MCM6	rs4988235-A	0.508	2E-13				Affymetrix, Illumina [2331072] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs4988235-G	NR	1E-13		7.4256573	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q21.3	MCM6	rs4988235-A	0.651664504477521	1E-6	(G_Bifidobacterium_RNT)	0.127941	[0.076-0.18] unit decrease	Illumina [7711310] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q21.3	NR	rs4988235-G	NR	5E-9		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q21.3	LCT	rs4988235-G	0.14765625	5E-210	(LCT, 9017_58_3)	0.9628598	[0.91-1.02] unit decrease	Illumina [> 1000000] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.3	LCT	rs4988235-A	0.711	2E-222	(Lactase-phlorizin hydrolase, LCT.9017.58.3)	0.78	[0.74-0.82] unit increase	Affymetrix [10572788] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q21.3	ZRANB3, MIR128-1, R3HDM1, LCT, LOC100507600, UBXN4, DARS, CXCR4	rs4988235-A	0.665850251591651	1E-9		0.0183999	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1627	chr2	136608645	136608646	rs4988235	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q21.3	MCM6	rs4988235-A	0.66	5E-6	(EA)	0.016	[0.0091-0.0225] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1627	chr2	136608645	136608646	rs4988235	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q21.3	MCM6	rs4988235-A	0.646	2E-6		0.016	[0.0094-0.0224] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1627	chr2	136608645	136608646	rs4988235	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q21.3	MCM6	rs4988235-A	0.6486	2E-8	(EA)	0.0217	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q21.3		rs182549-C	0.261329	1E-9		0.0271731	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2q21.3		rs182549-C	0.261329	4E-8		0.0245223	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales.f_Bifidobacteriaceae.g_Bifidobacterium)	7,738 European ancestry individuals	NA	2q21.3		rs182549-C	0.24497528741226104	9E-15		0.15223056	[0.11-0.19] unit decrease	Illumina [5584686] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales.f_Bifidobacteriaceae)	7,738 European ancestry individuals	NA	2q21.3		rs182549-C	0.24497528741226104	6E-15		0.15330176	[0.11-0.19] unit decrease	Illumina [5584686] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales)	7,738 European ancestry individuals	NA	2q21.3		rs182549-C	0.24497528741226104	6E-15		0.15327771	[0.11-0.19] unit decrease	Illumina [5584686] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria)	7,738 European ancestry individuals	NA	2q21.3		rs182549-C	0.24391679798617905	2E-13		0.13999455	[0.1-0.18] unit decrease	Illumina [5584686] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria)	7,738 European ancestry individuals	NA	2q21.3		rs182549-C	0.24391679798617905	2E-13		0.1399923	[0.1-0.18] unit decrease	Illumina [5584686] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Negativibacillus abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs182549-C	0.412692	4E-12		0.081189	[0.058-0.104] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136616753	136616754	rs182549	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bifidobacterium adolescentis abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs182549-C	0.412692	3E-20		0.206968	[0.16-0.25] unit increase	Illumina [7980478] (imputed)	N
1627	chr2	136616753	136616754	rs182549	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs182549-C	NR	6E-20		9.145381	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1627	chr2	136616753	136616754	rs182549	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs182549-C	NR	1E-20		9.310009	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1627	chr2	136616753	136616754	rs182549	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs182549-C	NR	6E-20		9.145381	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1627	chr2	136616753	136616754	rs182549	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs182549-C	NR	4E-20		9.193856	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1627	chr2	136616753	136616754	rs182549	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	2q21.3	MCM6/LCT	rs182549-C	NR	4E-64		16.91	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
1627	chr2	136616753	136616754	rs182549	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	2q21.3	MCM6/LCT	rs182549-C	0.33	4E-64	(EA)	16.91	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
1627	chr2	136617804	136617805	rs160329	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lachnospira rogosae abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs160329-C	0.342345	8E-11		0.107596	[0.075-0.14] unit decrease	Illumina [7980478] (imputed)	N
1627	chr2	136617804	136617805	rs160329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q21.3		rs160329-T	NR	2E-9		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1627	chr2	136618809	136618810	rs4988198	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2q21.3	MCM6	rs4988198-?	NR	9E-7	(AA)	0.058	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1627	chr2	136637551	136637551	rs373237642	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q21.3		rs373237642-A	0.886808	2E-8		0.036434	[0.024-0.049] unit decrease	NR [11722792] (imputed)	N
1627	chr2	136637551	136637551	rs373237642	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q21.3	NR	rs373237642-ATTT	0.121	1E-105	(Lactase-phlorizin hydrolase, LCT.9017.58.3)	0.89	[0.81-0.97] unit decrease	Affymetrix [10572788] (imputed)	N
1627	chr2	136646581	136646582	rs59213715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q21.3		rs59213715-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1627	chr2	136653924	136653925	rs614193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q21.3		rs614193-T	0.311845	2E-13		0.0346372	[0.025-0.044] unit increase	Illumina [13471440] (imputed)	N
1627	chr2	136658344	136658345	rs218174	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q21.3	DARS	rs218174-A	0.379	2E-13		1.121	[1.09-1.15]	Illumina [11270530] (imputed)	N
1627	chr2	136686392	136686393	rs177917	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	2q21.3	NR	rs177917-A	0.686866	9E-16		0.041015	[0.031-0.051] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1627	chr2	136692552	136692553	rs6711493	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	2q21.3	DARS	rs6711493-?	NR	9E-10		0.03782	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
1627	chr2	136695771	136695772	rs149881318	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	2q21.3	DARS	rs149881318-?	NR	7E-28		0.08736	[0.072-0.103] unit increase novel	Illumina [6108953] (imputed)	N
1627	chr2	136702712	136702713	rs74266318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs74266318-T	0.966481	2E-50				Affymetrix, Illumina [24649327] (imputed)	N
1627	chr2	136702712	136702713	rs74266318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	2q21.3	NR	rs74266318-T	0.849141	1E-50		0.076865	[0.067-0.087] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1627	chr2	136702712	136702713	rs74266318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	2q21.3	NR	rs74266318-T	0.851471	9E-40		0.094099	[0.08-0.108] SD units decrease	Affymetrix, Illumina [16289093] (imputed)	N
1627	chr2	136702712	136702713	rs74266318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs74266318-T	0.979626	2E-40				Affymetrix, Illumina [23114412] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q21.3		rs6754311-T	0.735276	7E-9		0.0266747	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut microbiota abundance (k_Bacteria.p_Actinobacteria.c_Actinobacteria.o_Bifidobacteriales.f_Bifidobacteriaceae.g_Bifidobacterium.s_Bifidobacterium_adolescentis)	7,738 European ancestry individuals	NA	2q21.3		rs6754311-T	0.748527862472423	7E-14		0.1558507	[0.12-0.2] unit increase	Illumina [5584686] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q21.3	DARS	rs6754311-T	0.217276	4E-17	(1,5-anhydroglucitol (1,5-AG))	0.235	[0.18-0.29] unit increase	Illumina [13039987] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q21.3	DARS	rs6754311-T	0.217276	2E-12	(indolepropionate)	0.188	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2q21.3	DARS	rs6754311-T	0.217276	2E-12	(indolepropionate)	0.188	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
1627	chr2	136707981	136707982	rs6754311	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q21.3	DARS	rs6754311-T	NR	4E-11		0.0390103	[0.027-0.051] unit increase	Illumina [13520550] (imputed)	N
1628	chr2	136713107	136713108	rs75874749	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2q21.3	DARS	rs75874749-?	NR	7E-30		0.06681	[0.055-0.078] unit increase novel	Illumina [6108953] (imputed)	N
1628	chr2	136715901	136715902	rs114164361	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2q21.3		rs114164361-?	NR	3E-11				Illumina [1128286]	N
1628	chr2	136719312	136719313	rs74771413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q21.3		rs74771413-G	0.151965	3E-51		0.0709946	[0.062-0.08] unit increase	Illumina [13479091] (imputed)	N
1628	chr2	136721602	136721603	rs12615624	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q21.3	DARS	rs12615624-?	NR	4E-7		1.1111112	[1.08-1.16]	Illumina [at least 5000000] (imputed)	N
1628	chr2	136732775	136732776	rs145010525	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2q21.3	DARS	rs145010525-?	NR	8E-7	(AA)	0.058	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1628	chr2	136735126	136735127	rs12624144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	2q21.3		rs12624144-C	0.153984	2E-39		0.0845374	[0.072-0.097] unit increase	Illumina [13467171] (imputed)	N
1628	chr2	136740899	136740900	rs687670	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs687670-C	NR	3E-12		6.976787	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1628	chr2	136740899	136740900	rs687670	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs687670-C	NR	2E-17		8.46827	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1628	chr2	136740899	136740900	rs687670	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs687670-C	NR	3E-17		8.463162	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1628	chr2	136740899	136740900	rs687670	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs687670-C	NR	2E-17		8.46827	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1628	chr2	136740899	136740900	rs687670	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q21.3		rs687670-C	NR	2E-17		8.470087	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1628	chr2	136743079	136743080	rs11548872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q21.3		rs11548872-C	NR	1E-39		0.0847	[0.072-0.097] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1628	chr2	136748808	136748809	rs77306654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q21.3		rs77306654-G	NR	5E-51		0.0713	[0.062-0.081] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1628	chr2	136769425	136769426	rs115653138	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	15,061 African American or Afro-Caribbean and African ancestry individuals	NA	2q21.3	NR	rs115653138-C	0.975322	3E-11		0.244527	[0.17-0.32] SD units decrease	Affymetrix, Illumina [36864690] (imputed)	N
1628	chr2	136783168	136783169	rs6714750	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q21.3	DARS	rs6714750-A	0.799964	3E-8		0.0145123	[0.0094-0.0196] unit decrease	Affymetrix [NR] (imputed)	N
1628	chr2	136783168	136783169	rs6714750	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q21.3	DARS	rs6714750-A	0.800023	4E-8		0.0142232	[0.0091-0.0193] unit decrease	Affymetrix [NR] (imputed)	N
1628	chr2	136787401	136787402	rs6716536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q21.3		rs6716536-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1628	chr2	136787729	136787730	rs144109344	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	13,476 African American or Afro-Caribbean and African ancestry individuals	NA	2q21.3	NR	rs144109344-C	0.969318	3E-14		0.267583	[0.2-0.34] SD units decrease	Affymetrix, Illumina [36456987] (imputed)	N
1628	chr2	136798979	136798980	rs10708550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q21.3		rs10708550-T	0.25973	8E-21		0.024642635	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1628	chr2	136802455	136802456	rs72974161	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q21.3	intergenic	rs72974161-A	0.102	2E-7		2.83	[1.88-4.26]	Illumina [1556551]	N
1628	chr2	136806773	136806774	rs7371606	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lachnospirales abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7371606-G	0.328615	1E-8		0.0400394	[0.026-0.054] unit decrease	Illumina [7980478] (imputed)	N
1628	chr2	136806773	136806774	rs7371606	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lachnospiraceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7371606-G	0.328615	3E-8		0.0434616	[0.028-0.059] unit decrease	Illumina [7980478] (imputed)	N
1628	chr2	136806773	136806774	rs7371606	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Firmicutes A abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7371606-G	0.328615	1E-10		0.0222986	[0.016-0.029] unit decrease	Illumina [7980478] (imputed)	N
1628	chr2	136806773	136806774	rs7371606	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridia abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs7371606-G	0.328615	2E-10		0.0289236	[0.02-0.038] unit decrease	Illumina [7980478] (imputed)	N
1628	chr2	136806773	136806774	rs7371606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q21.3	NR	rs7371606-A	0.681766	2E-12				Affymetrix, Illumina [19872809] (imputed)	N
1628	chr2	136806773	136806774	rs7371606	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	2q21.3		rs7371606-G	0.34	7E-9		1.95	[1.28-2.62] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1628	chr2	136806958	136806959	rs925966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q21.3	NR	rs925966-G	0.759472	1E-14		0.018295	[0.014-0.023] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1628	chr2	136806958	136806959	rs925966	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2q21.3	NR	rs925966-C	0.3847	6E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
1628	chr2	136806958	136806959	rs925966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q21.3		rs925966-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1628	chr2	136820075	136820076	rs11681248	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Terrisporobacter othiniensis abundance in stool	5,959 Finnish ancestry individuals	NA	2q21.3		rs11681248-C	0.383625	3E-8		0.0591511	[0.038-0.08] unit decrease	Illumina [7980478] (imputed)	N
1628	chr2	136820959	136820960	rs11681659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-3 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q21.3		rs11681659-C	0.283535	3E-10		0.0275604	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1628	chr2	136820959	136820960	rs11681659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	2q21.3		rs11681659-C	0.283535	6E-10		0.0272708	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
1628	chr2	136820959	136820960	rs11681659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	2q21.3		rs11681659-C	0.283535	2E-9		0.0264162	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
1628	chr2	136820959	136820960	rs11681659	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Docosahexaenoic acid levels	115,006 European ancestry individuals	NA	2q21.3		rs11681659-C	0.283535	2E-12		0.0305945	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
1628	chr2	136821878	136821879	rs35337335	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	2q21.3	NR	rs35337335-?	0.755	5E-7		0.023	[0.013-0.033] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1628	chr2	136821878	136821879	rs35337335	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	2q21.3	DARS, CXCR4	rs35337335-G	NR	4E-9		0.132	[0.089-0.175] unit increase	Affymetrix [28509962] (imputed)	N
1628	chr2	136822266	136822267	rs4954559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q21.3	NR	rs4954559-G	NR	1E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1628	chr2	136822266	136822267	rs4954559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q21.3	NR	rs4954559-G	NR	1E-9		0.0183	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1628	chr2	136827559	136827560	rs6430597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q21.3		rs6430597-T	0.32434	1E-9		0.014284247	[0.0097-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr2	136856496	136856496	rs61528333	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q21.3		rs61528333-GT	0.0645289999999999	3E-9		0.027616689	[0.018-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr2	136865421	136865422	rs115398257	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q22.1	NR	rs115398257-G	NR	5E-9		0.0542	[0.036-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1629	chr2	136870989	136870990	rs182451845	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q22.1	CXCR4	rs182451845-T	0.00106300000000004	2E-10		0.23814106	[0.17-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs2680880-A	NR	4E-8		5.476681	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs2680880-A	NR	1E-10		6.4690914	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs2680880-A	NR	2E-10		6.387349	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs2680880-A	NR	1E-10		6.4690914	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (class Actinobacteria id.419)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs2680880-A	NR	5E-11		6.5752187	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1629	chr2	136873548	136873549	rs2680880	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q22.1	NR	rs2680880-?	NR	7E-6		0.0408	[0.023-0.059] unit increase	Illumina [at least 560000] (imputed)	N
1629	chr2	136880473	136880474	rs12691874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q22.1	CXCR4	rs12691874-G	0.440464	2E-11		0.01995692	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr2	136883431	136883432	rs11688530	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.1	NR	rs11688530-A	0.135102	3E-13				Affymetrix, Illumina [24588908] (imputed)	N
1629	chr2	136883822	136883823	rs4954391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q22.1		rs4954391-T	NR	5E-46		0.0362	[0.031-0.041] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1629	chr2	136884460	136884461	rs11679328	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q22.1	NR	rs11679328-T	0.068147	3E-12		0.025741	[0.019-0.033] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1629	chr2	136884678	136884679	rs10191360	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q22.1	CXCR4	rs10191360-T	NR	4E-10		1.0836	NR	Affymetrix, Illumina [8278136] (imputed)	N
1629	chr2	136885733	136885734	rs6735269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.1	NR	rs6735269-A	0.765186	2E-92				Affymetrix, Illumina [23467995] (imputed)	N
1629	chr2	136887162	136887162	rs74693546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q22.1		rs74693546-ATGAAGGG	0.260212	5E-57		0.040750064	[0.036-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr2	136889207	136889208	rs13022141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q22.1		rs13022141-A	0.265	3E-19				Affymetrix [10369434] (imputed)	N
1629	chr2	136889207	136889208	rs13022141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q22.1		rs13022141-A	0.265	4E-20				Affymetrix [10369434] (imputed)	N
1629	chr2	136889207	136889208	rs13022141	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q22.1	intergenic	rs13022141-G	0.7355	6E-33		0.04828059	[0.04-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr2	136890058	136890059	rs7574456	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q22.1	intergenic	rs7574456-C	0.264616	1E-63		0.056458034	[0.05-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr2	136890058	136890059	rs7574456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q22.1	NR	rs7574456-T	0.739962	5E-80		0.040256	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1629	chr2	136892164	136892165	rs1818690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q22.1	intergenic	rs1818690-G	0.7358	1E-33		0.04872256	[0.041-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr2	136893224	136893225	rs17382303	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q22.1	intergenic	rs17382303-G	0.2614	5E-24		0.04106865	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1629	chr2	136893863	136893864	rs16832995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	2q22.1		rs16832995-T	0.367615	5E-9		0.0268028	[0.018-0.036] unit increase	Illumina [13471431] (imputed)	N
1629	chr2	136893863	136893864	rs16832995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q22.1		rs16832995-T	0.073871	1E-14		0.03294108	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr2	136893863	136893864	rs16832995	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	2q22.1	CXCR4, THSD7B	rs16832995-?	NR	1E-11		0.03155	[0.022-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1629	chr2	136893863	136893864	rs16832995	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	2q22.1	CXCR4, THSD7B	rs16832995-?	NR	2E-11		0.03129	[0.022-0.04] unit decrease novel	Illumina [6108953] (imputed)	N
1629	chr2	136907169	136907170	rs953387	27005825	Finkel TH	2016-03-22	BMC Med Genet	Variants in CXCR4 associate with juvenile idiopathic arthritis susceptibility.	Arthritis (juvenile idiopathic)	388 European ancestry cases, 2,500 European ancestry controls	778 European ancestry cases, 7,000 European ancestry controls	2q22.1	CXCR4	rs953387-T	0.74	3E-14		1.69	[1.45-2.00]	Illumina [at least 518907] (imputed)	N
1629	chr2	136908660	136908661	rs12622429	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q22.1		rs12622429-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1629	chr2	136925789	136925790	rs117407105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q22.1		rs117407105-C	0.015953	4E-12		0.061221153	[0.044-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1629	chr2	136925789	136925790	rs117407105	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q22.1		rs117407105-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1629	chr2	136926145	136926146	rs11687597	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38dim B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q22.1		rs11687597-G	0.20692	5E-8		0.1644	[0.11-0.22] unit increase	Illumina [18238287] (imputed)	N
1629	chr2	136927104	136927105	rs4954395	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q22.1		rs4954395-A	0.063275	2E-14		0.036029946	[0.027-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1629	chr2	136946041	136946042	rs61116130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.1	NR	rs61116130-T	0.199009	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
1629	chr2	136950743	136950744	rs80014247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q22.1		rs80014247-G	NR	8E-9		0.0305	[0.02-0.041] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1629	chr2	136960482	136960483	rs11688302	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q22.1	Intergenic	rs11688302-T	NR	2E-7		0.0301049	[0.019-0.041] unit decrease	Illumina [13520550] (imputed)	N
1629	chr2	136961418	136961419	rs77564995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q22.1		rs77564995-G	NR	6E-12		0.0212	[0.015-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1629	chr2	136963493	136963494	rs6716987	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Total cholesterol levels	29,902 European ancestry individuals	NA	2q22.1		rs6716987-A	0.34	4E-7		1.73	[1.06-2.40] unit increase	Affymetrix, Illumina [up to 2500000] (imputed)	N
1630	chr2	136970397	136970398	rs59741822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q22.1	NR	rs59741822-G	0.923006	7E-12		0.0329755	[0.023-0.043] unit increase	Affymetrix [16580851] (imputed)	N
1630	chr2	136976254	136976255	rs882300	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	2q22.1	CXCR4	rs882300-C	0.61	1E-7		1.19	[1.09-1.30]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1630	chr2	136976254	136976255	rs882300	17903306	Newton-Cheh C	2007-09-19	BMC Med Genet	Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study.	Electrocardiographic traits	1,951 European ancestry individuals from 355 families	NA	2q22.1	intergenic	rs882300-?	NR	3E-7	(PR interval)			Affymetrix [70897]	N
1630	chr2	136981610	136981610	rs6146925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q22.1		rs6146925-TCCATACCTTCA	0.906872	2E-9		0.022754453	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1630	chr2	136981610	136981610	rs6146925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q22.1		rs6146925-TCCATACCTTCA	0.9068744	7E-14		0.028564373	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1630	chr2	136986459	136986460	rs11688896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q22.1		rs11688896-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1630	chr2	136998063	136998064	rs13035055	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q22.1	intergenic	rs13035055-T	0.656	4E-6		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
1630	chr2	136998393	136998394	rs4954585	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	2q22.1	CXCR4	rs4954585-?		1E-6		1.258	[NR]	Affymetrix [492217] (imputed)	N
1630	chr2	136999530	136999531	rs12105717	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2q22.1		rs12105717-G	NR	3E-6		0.4106	unit increase	Illumina [8524982] (imputed)	N
1630	chr2	137015990	137015991	rs4452212	20421499	Levy D	2010-04-26	Proc Natl Acad Sci U S A	Genome-wide association identifies OBFC1 as a locus involved in human leukocyte telomere biology.	Telomere length	3,417 European ancestry individuals	1,893 African American and European ancestry individuals, 2,876 European ancestry individuals	2q22.1	CXCR4	rs4452212-A	NR	2E-6		0.05	[0.03-0.07] kb decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1630	chr2	137034782	137034783	rs560616755	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Hematopoietic Stem Cell Absolute Count	1,858 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q22.1		rs560616755-A	0.00755	5E-20		1.732	[1.37-2.1] unit increase	Illumina [17203588] (imputed)	N
1630	chr2	137038541	137038542	rs11675636	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	2q22.1	intergenic	rs11675636-T	0.07	2E-6	(EA)	0.0166	NR unit decrease (EA, SAGE Discovery)	Illumina [up to 10421983] (imputed)	N
1630	chr2	137039909	137039910	rs12623165	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q22.1		rs12623165-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1630	chr2	137039909	137039910	rs12623165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q22.1		rs12623165-T	0.879675	3E-10		0.021281924	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1630	chr2	137039909	137039910	rs12623165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q22.1	NR	rs12623165-T	0.877389	1E-13		0.021551	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1630	chr2	137045229	137045230	rs184847416	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	21,147 European ancestry cases, 434,460 European ancestry controls	NA	2q22.1	UBBP1	rs184847416-T	1.2E-4	1E-8		3.54	[1.95-5.12]	NR [10849711] (imputed)	N
1630	chr2	137045692	137045693	rs117774911	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	2q22.1	NR	rs117774911-A		2E-6		5.193	[3.06-7.33] unit decrease	Illumina [12759548] (imputed)	N
1630	chr2	137051973	137051974	rs72847650	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs72847650-A	NR	5E-7		5.0212	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1630	chr2	137051973	137051974	rs72847650	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs72847650-A	NR	8E-7		4.9248943	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1630	chr2	137051973	137051974	rs72847650	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs72847650-A	NR	5E-7		5.0212	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1630	chr2	137064384	137064385	rs34442475	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder	71 Korean ancestry child cases, 64 Korean ancestry child controls	NA	2q22.1	CXCR4	rs34442475-C	0.412	2E-6		2.3	[1.41-3.78]	Affymetrix [525356]	N
1630	chr2	137072860	137072861	rs6731259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q22.1		rs6731259-T	NR	6E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1630	chr2	137074131	137074132	rs6708702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.1	NR	rs6708702-A	0.397702	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1630	chr2	137074131	137074132	rs6708702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q22.1	NR	rs6708702-A	0.291857	2E-11		0.013639	[0.0097-0.0176] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1630	chr2	137074131	137074132	rs6708702	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q22.1	CXCR4	rs6708702-A	0.4027	8E-8		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1630	chr2	137077232	137077233	rs35050898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q22.1	NR	rs35050898-T	NR	9E-10		0.0244	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1630	chr2	137077232	137077233	rs35050898	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q22.1	NR	rs35050898-T	NR	6E-10		0.0247	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1630	chr2	137088798	137088799	rs34230842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q22.1		rs34230842-G	NR	1E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1631	chr2	137105541	137105542	rs12612435	28108127	Eitel I	2017-01-15	Int J Cardiol	Genome-wide association study in takotsubo syndrome - Preliminary results and future directions.	Takotsubo syndrome	96 European ancestry cases, 475 controls	NA	2q22.1	NR	rs12612435-T	0.68	5E-7		3.125	NR	NR [at least 498281] (imputed)	N
1631	chr2	137109955	137109956	rs7605150	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	2q22.1	NR	rs7605150-?	NR	6E-6		0.056938525	[NR] unit increase	Illumina [at least 269494] (imputed)	N
1631	chr2	137143306	137143307	rs2222016	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.1	CXCR4	rs2222016-C	0.7316	1E-8		0.01291364	[0.0085-0.0174] unit increase	Affymetrix [11514654] (imputed)	N
1631	chr2	137190883	137190884	rs140009341	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q22.1	Intergenic	rs140009341-A	NR	2E-7	(between families)	5.186	unit increase	Affymetrix [up to 15107142] (imputed)	N
1631	chr2	137224892	137224893	rs145883896	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.1	NR	rs145883896-A	0.01394	6E-9	(SEPT11)	0.03441	NR unit increase	Illumina [1671387] (imputed)	N
1632	chr2	137306521	137306522	rs116525497	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2q22.1	NR	rs116525497-A	0.978763	9E-6		0.205	[0.11-0.3] unit decrease	NR [9260588] (imputed)	N
1632	chr2	137338939	137338940	rs934299	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	2q22.1	intergenic	rs934299-?	NR	9E-6	(F3)			Affymetrix [70897]	N
1633	chr2	137367506	137367507	rs13391004	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	2q22.1	intergenic	rs13391004-A	0.079	1E-15		0.35	[0.26-0.43] unit decrease	Affymetrix [339439]	N
1633	chr2	137399538	137399539	rs55876337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.1	Intergenic	rs55876337-C	0.837	2E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1633	chr2	137409713	137409714	rs17654195	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.1	NR	rs17654195-?	NR	4E-7		5.052	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1633	chr2	137419943	137419944	rs55634885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.1	Intergenic	rs55634885-A	0.1303	7E-12	(MTAG)	0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1633	chr2	137442593	137442594	rs4954429	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q22.1	NR	rs4954429-?	NR	1E-5		0.6	[0.55-0.66]	Illumina [539000] (imputed)	N
1633	chr2	137449955	137449956	rs10170108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q22.1		rs10170108-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1633	chr2	137491120	137491121	rs1582861	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q22.1	THSD7B	rs1582861-T	0.50	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1634	chr2	137498051	137498052	rs5834501	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	2q22.1	NR	rs5834501-C	0.459679	5E-6		1.0925	[1.0517-1.1348]	Affymetrix [16396089] (imputed)	N
1634	chr2	137498051	137498052	rs5834501	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (hospital diagnosed)	10,083 European ancestry cases, 40,425 European ancestry controls	18,069 Icelandic ancestry cases, 246,293 Icelandic ancestry controls	2q22.1	NR	rs5834501-C	0.458775	7E-6		1.0731	[1.0405-1.1066]	Affymetrix [16468597] (imputed)	N
1634	chr2	137512403	137512404	rs72850040	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q22.1	NR	rs72850040-C	0.188867	2E-8		0.04507603	[0.029-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1634	chr2	137512403	137512404	rs72850040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q22.1	Intergenic	rs72850040-T	0.2539	2E-8		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1634	chr2	137527704	137527705	rs1427604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q22.1	Intergenic	rs1427604-A	0.6432	4E-10	(MTAG)	0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr2	137531742	137531743	rs2250458	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial conjugated linoleic acid	4,348 individuals	NA	2q22.1		rs2250458-T	0.108343614	2E-8		0.216465	[0.14-0.29] mmol/l increase	Illumina [7701709] (imputed)	N
1634	chr2	137531829	137531830	rs2558096	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q22.1	NR	rs2558096-T	NR	2E-8		5.636	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1634	chr2	137542846	137542847	rs35702515	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q22.1	THSD7B	rs35702515-T	0.237	5E-9		0.0157	[0.01-0.021] unit increase	Illumina [~ 250000] (imputed)	N
1634	chr2	137542846	137542847	rs35702515	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q22.1	THSD7B	rs35702515-T	0.2334	3E-9		0.018106366	[0.012-0.024] unit increase	Affymetrix [~ 11515000] (imputed)	N
1634	chr2	137545969	137545970	rs7572661	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.1	Intergenic	rs7572661-A	0.3276	6E-14	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr2	137545969	137545970	rs7572661	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.1	Intergenic	rs7572661-A	0.3276	3E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1634	chr2	137549883	137549884	rs10205354	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q22.1		rs10205354-A	0.424	2E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1634	chr2	137555223	137555224	rs1427593	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.1	Intergenic	rs1427593-T	0.3168	3E-10	(MTAG)	0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1634	chr2	137555223	137555224	rs1427593	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q22.1	THSD7B	rs1427593-A	0.08	7E-6	(dominant)	1.49	[1.25-1.77]	Illumina [420236]	N
1634	chr2	137564021	137564022	rs13026471	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q22.1	THSD7B	rs13026471-T	0.18	2E-8		0.0127	[0.0068-0.0186] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1634	chr2	137571173	137571174	rs34399632	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q22.1	NR	rs34399632-G	0.232	6E-12		0.00878977	[0.0063-0.0113] unit increase	NR [9732723] (imputed)	N
1634	chr2	137571173	137571174	rs34399632	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q22.1	NR	rs34399632-G	0.232	1E-10		0.019350398	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1634	chr2	137602925	137602926	rs1961273	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Bifidobacteriales id.432)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs1961273-C	NR	2E-7		5.2297587	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr2	137602925	137602926	rs1961273	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Bifidobacterium id.436)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs1961273-C	NR	4E-7		5.09385	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr2	137602925	137602926	rs1961273	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Bifidobacteriaceae id.433)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q22.1		rs1961273-C	NR	2E-7		5.2297587	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr2	137613934	137613935	rs13002862	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	2q22.1	THSD7B	rs13002862-C	0.744225	3E-8		0.00606166	[0.0039-0.0082] unit decrease	NR [NR] (imputed)	N
1634	chr2	137615687	137615688	rs6720647	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.1	THSD7B	rs6720647-A	0.7601	7E-9		0.013628829	[0.009-0.0182] unit decrease	Affymetrix [11514654] (imputed)	N
1634	chr2	137615687	137615688	rs6720647	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	2q22.1	Intergenic	rs6720647-G	0.2	2E-6	(Women, Lean)	20.0	[12-28] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
1634	chr2	137621702	137621703	rs1346732	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2q22.1	THSD7B	rs1346732-T		3E-9		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
1634	chr2	137622145	137622146	rs2710183	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.1	NR	rs2710183-?	NR	5E-8		5.44	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1634	chr2	137624875	137624876	rs55691047	30071075	Jiang L	2018-08-02	PLoS One	A genome-wide association study of energy intake and expenditure.	Energy expenditure	5,461 European ancestry lean females, 2,726 European ancestry lean males, 6,563 European ancestry overweight or obese females, 4,020 European ancestry overweight or obese males.	NA	2q22.1	Intergenic	rs55691047-G	0.21	2E-8	(Lean)	21.0	[14-29] kcals increase	Affymetrix, Illumina [NR] (imputed)	N
1635	chr2	137651499	137651500	rs550612	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.1	THSD7B	rs550612-A	0.7274	5E-8		0.012331902	[0.0079-0.0168] unit increase	Affymetrix [11514654] (imputed)	N
1635	chr2	137706055	137706056	rs7605851	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	2q22.1		rs7605851-G	0.19	3E-6		0.35	[0.22-0.54]	Illumina [9175654] (imputed)	N
1636	chr2	137768701	137768702	rs979976	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		2q22.1	NR	rs979976-A	NR	8E-6		0.134	[0.075-0.193] unit increase	Illumina [~ 2500000] (imputed)	N
1636	chr2	137771859	137771860	rs16837853	30169916	Sun Y	2018-08-31	J Eur Acad Dermatol Venereol	Investigation of the Predisposing Factor of Pemphigus and its clinical subtype through a Genome-wide association and next generation sequence analysis.	Pemphigus vulgaris	101 Chinese ancestry cases, 844 Chinese ancestry controls	at least 56 Chinese ancestry cases, up to 996 Chinese ancestry controls	2q22.1	NR	rs16837853-G	NR	8E-6		2.0		Illumina [5546030] (imputed)	N
1636	chr2	137802854	137802855	rs62171220	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	2q22.1	THSD7B	rs62171220-G	0.1064	4E-6		2.71275	[1.55-3.87] unit increase	Illumina [6716580] (imputed)	N
1636	chr2	137819210	137819211	rs7569725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q22.1		rs7569725-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1636	chr2	137865421	137865422	rs10496767	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	HNMT	rs10496767-?	NR	7E-6	(beta hydroxybutyric acid)	0.20044716	[0.11-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1636	chr2	137867610	137867611	rs1432223	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	HNMT	rs1432223-?	NR	2E-6	(pyridoxate)	0.22350997	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1636	chr2	137873346	137873347	rs892877	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	2q22.1	THSD7B	rs892877-A	0.18	4E-6		0.032	[0.018-0.046] unit decrease	Illumina [747076]	N
1636	chr2	137875874	137875875	rs1469622	24172245	Haga S	2013-10-31	J Hum Genet	A genome-wide association study of third molar agenesis in Japanese and Korean populations.	Tooth agenesis (third molar)	149 East Asian ancestry cases, 338 East Asian ancestry controls	NA	2q22.1	THSD7B	rs1469622-T	NR	8E-6		1.88	[1.43-2.47]	Illumina [532105]	N
1637	chr2	137923760	137923761	rs17346504	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	2q22.1	THSD7B	rs17346504-T	0.12	7E-6		0.05	[0.028-0.072] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1637	chr2	137925906	137925907	rs13019227	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q22.1	NR	rs13019227-?	NR	3E-8	(Japanese)	0.7808	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1637	chr2	137996341	137996342	rs71419535	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	2q22.1	NR	rs71419535-?	NR	1E-8			[NR]	Illumina [5779266] (imputed)	N
1638	chr2	138042939	138042940	rs2573093	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	2q22.1		rs2573093-C	NR	2E-6		0.7456		Illumina [7574753] (imputed)	N
1638	chr2	138076540	138076541	rs115551198	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		THSD7B	rs115551198-?	NR	6E-9		0.58	[NR] unit increase	Affymetrix [NR] (imputed)	N
1638	chr2	138142163	138142164	rs13405020	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	2q22.1	THSD7B	rs13405020-?	NR	7E-6	(Dominant model)			Affymetrix [271817]	N
1639	chr2	138157910	138157911	rs62165743	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q22.1	THSD7B	rs62165743-T	0.0054	8E-6		0.2494	[0.14-0.36] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1639	chr2	138175627	138175628	rs144869524	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2q22.1	THSD7B	rs144869524-?		8E-6				Illumina [2668805]	N
1639	chr2	138190245	138190246	rs114389936	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	2q22.1	NR	rs114389936-C	0.9813	1E-8		2.2558	[1.48-3.03] unit increase	Affymetrix, Illumina [12989440] (imputed)	N
1639	chr2	138264230	138264231	rs13382553	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2q22.1	THSD7B	rs13382553-A	0.766	2E-9		6.001	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
1640	chr2	138282581	138282582	rs150492560	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2q22.1	THSD7B	rs150492560-?		7E-6				Illumina [2668805]	N
1640	chr2	138299908	138299909	rs77559408	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	2q22.1	NR	rs77559408-?		4E-7		4.92	[3.01-6.82]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1640	chr2	138307345	138307346	rs10209086	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	2q22.1	THSD7B	rs10209086-C	0.58	7E-6		1.2820514		Illumina [4903804] (imputed)	N
1640	chr2	138310149	138310150	rs1448917	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q22.1		rs1448917-G	0.607	1E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1640	chr2	138386594	138386595	rs1448919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q22.1		rs1448919-A	NR	4E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1640	chr2	138394598	138394599	rs7601101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q22.1		rs7601101-C	NR	7E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1640	chr2	138394598	138394599	rs7601101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q22.1		rs7601101-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1641	chr2	138421226	138421227	rs72844590	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q22.1	THSD7B	rs72844590-T	0.1489	5E-9		0.2083	[0.14-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1641	chr2	138425297	138425298	rs150394950	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	2q22.1	THSD7B	rs150394950-?		8E-6				Illumina [2668805]	N
1641	chr2	138504688	138504689	rs1378751	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Rhodanobacter abundance in stool	5,959 Finnish ancestry individuals	NA	2q22.1		rs1378751-T	0.202343	7E-9		0.0302228	[0.02-0.04] unit decrease	Illumina [7980478] (imputed)	N
1642	chr2	138549185	138549186	rs10204673	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q22.1	NR	rs10204673-T	0.788	3E-9		0.0106357	[0.0071-0.0141] unit decrease	NR [9732723] (imputed)	N
1642	chr2	138619714	138619715	rs6430748	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	2q22.1	HNMT, THSD7B	rs6430748-A	NR	8E-6	(daytime resting duration, weekdays)	0.2177	[0.12-0.31] unit increase	Affymetrix [7141204] (imputed)	N
1642	chr2	138633268	138633269	rs10754926	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.1	NR	rs10754926-?	NR	2E-6				Affymetrix [NR]	N
1643	chr2	138685611	138685612	rs10171320	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.1	Intergenic	rs10171320-A	0.379	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1643	chr2	138696225	138696226	rs6756760	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Disability level (impaired activities of daily living)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	2q22.1		rs6756760-A	NR	7E-6		2.613	[1.48-3.75] unit increase	NR [534934]	N
1646	chr2	139195327	139195328	rs12611523	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q22.1	NR	rs12611523-A	NR	3E-8		0.702	unit increase	Affymetrix [14661600] (imputed)	N
1647	chr2	139212489	139212490	rs35094601	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q22.1	NR	rs35094601-G	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1647	chr2	139218421	139218424	rs146406602	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma x sex interaction	3,371 African ancestry, European ancestry, Native American ancestry cases, 2,650 African ancestry, European ancestry, Native American ancestry controls	NA	2q22.1		rs146406602-AAAAAAA	NR	2E-7		0.56	[0.45-0.7]	Affymetrix [6680224] (imputed)	N
1647	chr2	139278921	139278922	rs10170310	23241943	Clark SL	2012-12-12	Pharmacogenet Genomics	Genome-wide association study of patient-rated and clinician-rated global impression of severity during antipsychotic treatment.	Response to antipsychotic treatment	Up to 421 European ancestry Schizophrenia cases, up to 214 African American individuals, up to 103 individuals	NA	2q22.1	SPOPL	rs10170310-G	0.213	1E-7	(Effect of Olanzapine on PGI)			Affymetrix [492900]	N
1648	chr2	139332686	139332687	rs2056389	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q22.1	NR	rs2056389-?	NR	2E-6	(AA)	10.39	[9.16-11.62]	Illumina [905956]	N
1648	chr2	139399353	139399354	rs58938945	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	2q22.1	intergenic	rs58938945-A		8E-6		0.2848	unit increase	Illumina [5767231] (imputed)	N
1648	chr2	139420391	139420392	rs17650634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs17650634-T	0.8287	2E-8		0.0104	[0.0067-0.0141] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1648	chr2	139420391	139420392	rs17650634	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs17650634-T	0.8287	4E-8	(MTAG)	0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1649	chr2	139467254	139467255	rs62163199	29168253	Seielstad M	2017-11-22	Transfusion	Genomewide association study of HLA alloimmunization in previously pregnant blood donors.	Alloimmunization response to pregnancy (HLA class I)	up to 247 European ancestry alloantibody-positive previously pregnant cases, 753 European ancestry alloantibody-negative previously pregnant controls	NA	2q22.1	NXPH2	rs62163199-A	NR	2E-8		1.96	[1.54-2.44]	Illumina [9427497] (imputed)	N
1649	chr2	139511491	139511492	rs76090288	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NXPH2	rs76090288-?	NR	5E-9		3.22744	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1649	chr2	139581764	139581765	rs115047317	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	2q22.1	NXPH2	rs115047317-G	0.969	9E-8	(EA)	0.314	[0.2-0.43] unit increase	Illumina [NR] (imputed)	N
1650	chr2	139614417	139614418	rs10166824	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	LOC339745	rs10166824-?	NR	5E-6	(SM 18:1)	0.38852113	[0.22-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1650	chr2	139614417	139614418	rs10166824	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	LOC339745	rs10166824-?	NR	4E-6	(SM 16:1)	0.3916885	[0.23-0.56] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1650	chr2	139639575	139639576	rs7598465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs7598465-A	0.539	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr2	139671954	139671955	rs9636231	21956439	Zuo L	2011-09-28	Neuropsychopharmacology	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	2q22.1	NXPH2	rs9636231-?	NR	8E-6	(EA + AA)			Illumina [805814]	N
1650	chr2	139719346	139719347	rs112525781	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q22.1	intergenic	rs112525781-C	NR	9E-6	(AA)	0.911	unit decrease	Illumina [at least 5086170] (imputed)	N
1651	chr2	139751583	139751584	rs138054476	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q22.1		rs138054476-T	0.0178692	4E-9		0.0817226	[0.054-0.109] unit increase	Illumina [7980478] (imputed)	N
1651	chr2	139751583	139751584	rs138054476	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	2q22.1		rs138054476-T	0.0178692	3E-8		0.0951818	[0.062-0.129] unit increase	Illumina [7980478] (imputed)	N
1651	chr2	139833139	139833140	rs71413769	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2q22.1	NXPH2	rs71413769-G	0.1	5E-6		0.11	[0.071-0.149] unit increase	Illumina [~ 8300000] (imputed)	N
1652	chr2	139874227	139874228	rs115089939	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	2q22.1	LOC647012	rs115089939-T	NR	1E-6	(Pi10, Cases)	0.086	[0.053-0.119] unit decrease	Illumina [7600000] (imputed)	N
1652	chr2	139917013	139917014	rs12613166	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	LOC339745	rs12613166-?	NR	4E-6	(LPC 18:1)	0.18999854	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1652	chr2	139924117	139924118	rs6716368	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	2q22.1	intergenic	rs6716368-?	NR	9E-6		1.26	[NR]	Affymetrix [up to 10996499] (imputed)	N
1653	chr2	140062181	140062182	rs10496816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.1	Intergenic	rs10496816-T	0.3646	9E-9	(MTAG)	0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1653	chr2	140062181	140062182	rs10496816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.1	Intergenic	rs10496816-C	0.6354	1E-8		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1653	chr2	140094425	140094426	rs13013909	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.1	Intergenic	rs13013909-T	0.3422	2E-8	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1653	chr2	140101864	140101865	rs344687	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs344687-T	0.7609	2E-9	(MTAG)	0.0093	[0.0062-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1654	chr2	140124247	140124248	rs344693	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs344693-A	0.2382	1E-10	(conditional-joint)	0.0109	[0.0076-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1654	chr2	140147831	140147832	rs1399645	19478329	Aston KI	2009-05-28	J Androl	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	2q22.1	NXPH2	rs1399645-?	0.02	9E-7	(azoospermia)			Illumina [314776]	N
1655	chr2	140328297	140328297	rs145846361	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q22.1	intergenic	rs145846361-A	0.369243	4E-13		0.016082	[0.012-0.02] unit decrease	NR [16516521] (imputed)	N
1655	chr2	140341019	140341020	rs1438026	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q22.1	LRP1B	rs1438026-T	0.67	1E-12		0.0089	[0.0064-0.0114] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1655	chr2	140341019	140341020	rs1438026	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q22.1	LRP1B	rs1438026-T	0.6721	1E-8		0.011802281	[0.0078-0.0159] unit increase	Illumina [9339358] (imputed)	N
1655	chr2	140354486	140354487	rs12466947	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2q22.1	LRP1B	rs12466947-A	0.3079	2E-8		0.01443716	[0.0094-0.0195] unit increase	Affymetrix [11515109] (imputed)	N
1656	chr2	140433324	140433325	rs59396197	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2q22.1	YY1P2, LRP1B	rs59396197-G	0.959069538	3E-7		1.2400912	[1.14-1.35]	Illumina [10439017] (imputed)	N
1656	chr2	140448155	140448156	rs7574941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.1		rs7574941-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1656	chr2	140454375	140454376	rs72972965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs72972965-A	0.3496	3E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1656	chr2	140496345	140496346	rs1438034	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.1	NR	rs1438034-A	0.0122	8E-10	(CYP2E1)	0.5077	NR unit increase	Illumina [1671387] (imputed)	N
1657	chr2	140510234	140510235	rs970223	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2q22.1	AKR1C7P	rs970223-?	NR	3E-13	(EA)	0.01013	[0.0041-0.0162] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1657	chr2	140510234	140510235	rs970223	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (1df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2q22.1	AKR1C7P	rs970223-?	NR	2E-8	(EA)	0.04636	[0.03-0.062] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1657	chr2	140563367	140563368	rs10169002	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs10169002-A	0.5305	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1657	chr2	140565143	140565144	rs9784115	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.1	NR	rs9784115-?	NR	1E-6				Affymetrix [NR]	N
1657	chr2	140626730	140626731	rs16842994	19901119	Trevino LR	2009-11-09	J Clin Oncol	Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.	Methotrexate pharmacokinetics (acute lymphoblastic leukemia)	315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases	NA	2q22.1	intergenic	rs16842994-C	0.02	2E-6			[NR]	Affymetrix [398699]	N
1658	chr2	140642377	140642378	rs75308819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs75308819-A	0.0233	9E-10		0.0287	[0.019-0.038] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1658	chr2	140652987	140652988	rs1356798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.1	Intergenic	rs1356798-T	0.4056	6E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1658	chr2	140653748	140653749	rs1464297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs1464297-T	0.649	1E-13		0.0109	[0.008-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1658	chr2	140653748	140653749	rs1464297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs1464297-T	0.649	5E-13	(MTAG)	0.0099	[0.0072-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1658	chr2	140660134	140660135	rs75052153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.1	NR	rs75052153-T	0.01568	2E-12	(COMT)	0.7256	NR unit increase	Illumina [1671387] (imputed)	N
1658	chr2	140757395	140757396	rs11900075	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q22.1	LRP1B	rs11900075-A	0.8648	1E-9		0.017267596	[0.012-0.023] unit increase	Illumina [9339358] (imputed)	N
1659	chr2	140773445	140773446	rs12623054	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q22.1	intergenic	rs12623054-?	NR	4E-6		0.127	[0.056-0.198] unit increase	Illumina [at least 13000000] (imputed)	N
1659	chr2	140817540	140817541	rs7566955	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	2q22.1	LRP1B, YY1P2	rs7566955-?	0.6809	8E-7		5.263158		Affymetrix [757439]	N
1660	chr2	140973959	140973960	rs1486964	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	2q22.1		rs1486964-T	0.68	6E-6		0.09	[0.051-0.129] unit decrease	Illumina [5305352] (imputed)	N
1660	chr2	141026435	141026436	rs113533135	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q22.1	LRP1B	rs113533135-?	NR	3E-7		0.189	[0.091-0.287] unit increase	Illumina [at least 13000000] (imputed)	N
1661	chr2	141050068	141050069	rs1532002	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	2q22.1	LRP1B	rs1532002-?	NR	1E-6		1.066	[0.53-1.61] unit increase	Illumina [at least 13000000] (imputed)	N
1661	chr2	141063829	141063830	rs643684	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	2q22.1	LRP1B	rs643684-?	0.0	6E-21				Affymetrix [547296]	N
1661	chr2	141063829	141063830	rs643684	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) infection	49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls	NA	2q22.1	LRP1B	rs643684-?	NR	4E-8				Affymetrix [547296]	N
1661	chr2	141087768	141087768	rs377073464	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	2q22.1	LRP1B	rs377073464-?	NR	3E-8		0.00682733	[0.0044-0.0093] unit increase	Affymetrix [NR] (imputed)	N
1662	chr2	141226308	141226309	rs72899866	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	2q22.1	LRP1B	rs72899866-A	0.22	5E-6	(Age 20-60 years)	1.39	[1.21-1.60]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1662	chr2	141269441	141269442	rs183373550	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2q22.1	NR	rs183373550-A	0.002	7E-6		1.258	[0.71-1.8] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1663	chr2	141306629	141306630	rs112796779	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	2q22.1	NR	rs112796779-A	NR	6E-6	(random effect)	1.15	NR	NR [6904914] (imputed)	N
1663	chr2	141310720	141310721	rs1463616	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	NXPH2	rs1463616-?	NR	3E-6	(LPE 18:1)	0.15841255	[0.092-0.225] unit increase	Affymetrix [at least 2500000] (imputed)	N
1663	chr2	141362057	141362058	rs491391	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (disc area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	2q22.1	LRP1B	rs491391-A	NR	3E-7		0.407	[0.22-0.59] unit decrease	Illumina [~ 2740000] (imputed)	N
1663	chr2	141363376	141363377	rs12470296	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2q22.1	LRP1B	rs12470296-A	0.13	7E-6		0.1252	[0.071-0.18] unit increase	Illumina [up to 38043574] (imputed)	N
1663	chr2	141387480	141387481	rs74645087	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (male raters)	3,928 European ancestry individuals	NA	2q22.1	LRP1B	rs74645087-A	0.016	2E-7		0.644	[0.40-0.89] unit increase	Illumina [7251583] (imputed)	N
1663	chr2	141397378	141397379	rs182518743	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	2q22.1	LRP1B	rs182518743-?	NR	5E-7	(Hispanic/Latino)	8.749354	[5.33-12.17] unit decrease	Illumina [30341014] (imputed)	N
1663	chr2	141397378	141397379	rs182518743	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	2q22.1	LRP1B	rs182518743-?	NR	4E-8		7.765	[4.99-10.54] unit decrease	Illumina [30341014] (imputed)	N
1663	chr2	141422978	141422979	rs142320277	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	2q22.1	LRP1B	rs142320277-?	NR	5E-8				Illumina [430492]	N
1663	chr2	141424016	141424017	rs183717966	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q22.1	NR	rs183717966-?	NR	4E-11				Illumina [7760689] (imputed)	N
1663	chr2	141424016	141424017	rs183717966	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q22.1	NR	rs183717966-?	NR	2E-8				Illumina [7760689] (imputed)	N
1663	chr2	141424016	141424017	rs183717966	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q22.1	NR	rs183717966-?	NR	1E-8				Illumina [7760689] (imputed)	N
1664	chr2	141427543	141427544	rs16844458	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.1	NR	rs16844458-T	0.0331	6E-9	(STAT1)	0.06307	NR unit increase	Illumina [1671387] (imputed)	N
1664	chr2	141510640	141510641	rs288112	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q22.1	NR	rs288112-T	0.625067	8E-6		1.0638298	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1664	chr2	141545754	141545755	rs17515225	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	2q22.1	LRP1B	rs17515225-T	0.445	3E-9		0.032	[0.021-0.042] unit increase	Illumina [7428049] (imputed)	N
1665	chr2	141569258	141569259	rs6758311	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.1	NXPH2	rs6758311-?	NR	5E-6	(TAG 58:6)	0.249334	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1665	chr2	141578481	141578481	rs72077160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q22.1		rs72077160-TA	NR	2E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1665	chr2	141591407	141591408	rs76247873	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q22.1	LRP1B, MRPS18BP2, LOC100129955	rs76247873-A	0.039	5E-6		3.37	[1.94-5.85]	Illumina [1556551]	N
1665	chr2	141598680	141598681	rs74787922	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs74787922-A	0.9333	9E-11		0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1665	chr2	141598680	141598681	rs74787922	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs74787922-A	0.9333	2E-11	(MTAG)	0.0176	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1665	chr2	141665914	141665915	rs187203999	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q22.1	LRP1B	rs187203999-T	0.982	2E-6	(AA)	0.455	NR unit increase	Illumina [NR] (imputed)	N
1665	chr2	141666070	141666071	rs41497646	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.1	NR	rs41497646-?	NR	1E-214				Affymetrix [NR]	N
1665	chr2	141668716	141668717	rs76917806	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Iron levels	587 Han Chinese ancestry individuals	NA	2q22.1		rs76917806-?	NR	5E-6		0.032	[-0.0562-0.1202] unit increase	Affymetrix [6423076] (imputed)	N
1665	chr2	141668716	141668717	rs76917806	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Calcium levels	587 Han Chinese ancestry individuals	NA	2q22.1		rs76917806-?	NR	6E-7		0.031	[-0.81964-0.88164] unit decrease	Affymetrix [6423076] (imputed)	N
1666	chr2	141721141	141721142	rs12474609	19367585	Poduslo SE	2009-04-14	Am J Med Genet B Neuropsychiatr Genet	A genome screen of successful aging without cognitive decline identifies LRP1B by haplotype analysis.	Aging	89 European ancestry and African American successfully aged individuals, 227 European ancestry Alzheimers cases	NA	2q22.1	LRP1B	rs12474609-?	NR	6E-9				Affymetrix [469218]	N
1666	chr2	141722126	141722127	rs13013614	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	2q22.1		rs13013614-A	0.34	5E-7		1.36	[1.21-1.54]	Illumina [10258281] (imputed)	N
1666	chr2	141730051	141730052	rs75988504	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	2q22.1	NR	rs75988504-?	0.04	5E-8		2.01	[1.56-2.58]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1666	chr2	141741589	141741590	rs4954683	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q22.1	NR	rs4954683-C	0.172162723953695	9E-6	(IGP65)	0.1823	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1666	chr2	141786612	141786613	rs75924665	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Cognitive performance (processing speed)	4,611 European ancestry adolescents	NA	2q22.1	LRP1B	rs75924665-?	NR	2E-6		0.165	[0.087-0.243] unit increase	Illumina [6319684] (imputed)	N
1666	chr2	141795619	141795620	rs10210358	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA		LRP1B	rs10210358-?	0.31	2E-6		5.34	[NR]	Affymetrix [512497]	N
1667	chr2	141861909	141861910	rs1882642	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2q22.1	LRP1B	rs1882642-A	0.146	2E-9	(ACE inhibitors, plain [C09AA])	2.1		Illumina [16500000] (imputed)	N
1667	chr2	141861909	141861910	rs1882642	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2q22.1	LRP1B	rs1882642-A	0.135	5E-7	(Sulfonamides, plain [C03CA])	2.1		Illumina [16500000] (imputed)	N
1667	chr2	141873043	141873043	rs70991138	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.1	NR	rs70991138-T	0.01045	2E-9	(FDXR)	0.06282	NR unit increase	Illumina [1671387] (imputed)	N
1667	chr2	141878394	141878395	rs116792882	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	2q22.1	LRP1B	rs116792882-T	NR	5E-10		0.686	[0.47-0.9] unit decrease	Affymetrix [7701190] (imputed)	N
1667	chr2	141921787	141921788	rs1033284	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	2q22.1	LRP1B	rs1033284-?	NR	3E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1668	chr2	141962156	141962157	rs11895588	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	2q22.1	LRP1B	rs11895588-?	NR	7E-7		1.8365135	[1.44-2.34]	Illumina [at least 4756772] (imputed)	N
1668	chr2	141964110	141964111	rs6733026	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.1	Intergenic	rs6733026-A	0.4757	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1668	chr2	142000894	142000895	rs116126524	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	2q22.1	LRP1B	rs116126524-?	NR	5E-6		0.727	[0.42-1.04] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1668	chr2	142015245	142015246	rs77455689	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q22.1	NR	rs77455689-?	NR	4E-6	(Native Hawaiian)	1.1204	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1668	chr2	142069013	142069014	rs7597412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.1		rs7597412-C	0.3688	2E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1668	chr2	142069013	142069014	rs7597412	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	2q22.1	NR	rs7597412-C	0.364	3E-8		1.0344738	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1669	chr2	142119401	142119402	rs1402470	34155719	Margaritte-Jeannin P	2021-06-22	Clin Exp Allergy	Identification of OCA2 as a novel locus for the co-morbidity of asthma-plus-eczema.	Asthma and eczema	1,208 European ancestry cases with both asthma and eczema, 7,599 European ancestry controls with neither asthma nor eczema	NA	2q22.1	LRP1B, NXPH2, KYNU	rs1402470-G	0.556	5E-6		0.25	[0.14-0.36] unit decrease	Illumina [NR] (imputed)	N
1669	chr2	142172365	142172366	rs4954702	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q22.1	NR	rs4954702-?	NR	1E-6		0.1077	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1670	chr2	142216112	142216113	rs17613427	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	2q22.1	NR	rs17613427-T	0.9547	2E-6		0.4331	[0.26-0.61] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
1670	chr2	142228508	142228509	rs12472911	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q22.1	LRP1B	rs12472911-C	0.2	7E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1670	chr2	142228508	142228509	rs12472911	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	2q22.1	LRP1B	rs12472911-C	0.20	2E-7		2.5	[1.52-3.48] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1670	chr2	142230942	142230943	rs13394458	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2q22.1	LRP1B	rs13394458-G	NR	3E-6	(sleep onset irregularity, weekdays)	0.0916	[0.053-0.13] unit increase	Affymetrix [7141204] (imputed)	N
1670	chr2	142271918	142271919	rs62167901	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q22.2	LRP1B	rs62167901-A	0.1126	5E-9		0.018674007	[0.012-0.025] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1670	chr2	142274787	142274788	rs6706377	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.2	NR	rs6706377-?	NR	5E-10				Affymetrix [NR]	N
1670	chr2	142290324	142290325	rs62167939	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.2	Intergenic	rs62167939-A	0.065	3E-13	(MTAG)	0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1670	chr2	142290619	142290620	rs7584391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q22.2		rs7584391-A	NR	3E-11		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1670	chr2	142293145	142293146	rs17551974	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q22.2	NA	rs17551974-A	0.1873	4E-9		0.0127	[0.0084-0.017] unit decrease	NR [~ 27400000] (imputed)	N
1670	chr2	142299734	142299735	rs1384660	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q22.2	LRP1B	rs1384660-G	0.814942	2E-18		0.0158046	[0.012-0.019] unit increase	Affymetrix [12370749]	N
1670	chr2	142300934	142300935	rs192324744	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	2q22.2	LRP1B	rs192324744-G	0.0131	2E-11		1.63	[1.41-1.88]	Affymetrix, Illumina [9061522] (imputed)	N
1670	chr2	142302502	142302503	rs35935052	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.2	NR	rs35935052-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1670	chr2	142302502	142302503	rs35935052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.2		rs35935052-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1670	chr2	142330968	142330969	rs10928112	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q22.2	intergenic	rs10928112-C	NR	2E-6	(Chinese)	1.0964912	[1.06-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1670	chr2	142342655	142342656	rs60929679	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.2		rs60929679-T	0.9342	5E-19	(conditional-joint)	0.0252	[0.02-0.031] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1671	chr2	142347112	142347113	rs6429911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.2		rs6429911-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1671	chr2	142347454	142347455	rs6429912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q22.2		rs6429912-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1671	chr2	142353438	142353439	rs62166490	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q22.2	LRP1B	rs62166490-T	0.06776	2E-12		0.028953169	[0.021-0.037] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1671	chr2	142358949	142358950	rs77609760	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q22.2		rs77609760-A	0.91231	1E-7		37.841232	z score increase	NR [6814003]	N
1671	chr2	142358949	142358950	rs77609760	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q22.2	LRP1B	rs77609760-?	NR	1E-12		0.027236994	[0.02-0.035] unit increase	NR [7306098]	N
1671	chr2	142358949	142358950	rs77609760	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.2		rs77609760-A	0.9346	8E-17		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1671	chr2	142383483	142383484	rs140606184	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2q22.2		rs140606184-?	NR	4E-6		0.7094424	[0.41-1.01] unit increase	Illumina [9901720] (imputed)	N
1671	chr2	142430591	142430592	rs355546	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q22.2	NR	rs355546-G	0.0636183	8E-10		0.08844336	[0.06-0.117] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1671	chr2	142467652	142467653	rs116467987	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q22.2	LRP1B	rs116467987-T	0.08	3E-6	(African American)	0.33	0.19-0.47 unit decrease	Illumina [NR] (imputed)	N
1672	chr2	142518973	142518974	rs539006870	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	2q22.2		rs539006870-?	NR	6E-6				Illumina [7401356] (imputed)	N
1672	chr2	142544992	142544993	rs1595320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q22.2		rs1595320-T	NR	1E-9		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1672	chr2	142557334	142557335	rs7568149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.2	Intergenic	rs7568149-A	0.7757	3E-8	(MTAG)	0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1672	chr2	142558716	142558717	rs11679837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q22.2	Intergenic	rs11679837-T	0.8002	4E-8	(MTAG)	0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1672	chr2	142563274	142563275	rs13034371	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.2	NR	rs13034371-?	NR	5E-7		5.031	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1672	chr2	142567470	142567471	rs10496900	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q22.2	LRP1B	rs10496900-?		8E-6				Illumina [4322238] (imputed)	N
1672	chr2	142574776	142574777	rs1370332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q22.2		rs1370332-C	0.494556	2E-8		0.015295	[0.0099-0.0206] unit decrease	Illumina [13479924] (imputed)	N
1672	chr2	142580269	142580270	rs141639794	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	2q22.2		rs141639794-T	0.975566	5E-6		0.0415575	[0.024-0.06] unit decrease	Illumina [13900000] (imputed)	N
1673	chr2	142615135	142615136	rs12617004	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q22.2	LRP1B	rs12617004-C	0.393	6E-9	(Japanese)	0.02	[0.012-0.028] unit increase	Illumina [6108953] (imputed)	N
1673	chr2	142622738	142622739	rs13019219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2q22.2		rs13019219-C	0.399916	6E-9		0.0190955	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
1673	chr2	142624752	142624753	rs13007371	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.2	Intergenic	rs13007371-A	0.3874	3E-8	(MTAG)	0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1673	chr2	142634906	142634907	rs10179057	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	2q22.2	LRP1B	rs10179057-T	0.8285	1E-6		0.4402	[0.26-0.62] unit increase	NR [NR] (imputed)	N
1673	chr2	142634906	142634907	rs10179057	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	2q22.2	LRP1B	rs10179057-T	NR	7E-6		0.3843	[0.22-0.55] unit increase	NR [NR] (imputed)	N
1674	chr2	142767432	142767433	rs34311235	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	2q22.2	LRP1B	rs34311235-T	0.368	8E-9		0.032	[0.021-0.042] unit increase	Illumina [7428049] (imputed)	N
1674	chr2	142819606	142819607	rs11688838	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	2q22.2	NR	rs11688838-A		2E-6				Illumina [458865]	N
1674	chr2	142831757	142831758	rs13396415	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q22.2	NA	rs13396415-A	0.8395	5E-11		0.0149	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1674	chr2	142862829	142862830	rs10181071	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.2		rs10181071-A	0.8265	3E-8		0.0102	[0.0065-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1675	chr2	142873026	142873030	rs148369819	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2q22.2	NR	rs148369819-?	NR	5E-6		0.02334	[0.013-0.033] unit decrease	Affymetrix [9658292] (imputed)	N
1675	chr2	142874786	142874787	rs72851476	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q22.2	LRP1B	rs72851476-A	0.843679	3E-8		0.0107274	[0.0069-0.0145] unit increase	Affymetrix [12370749]	N
1675	chr2	142874786	142874787	rs72851476	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.2	NR	rs72851476-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1675	chr2	142874786	142874787	rs72851476	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.2		rs72851476-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1675	chr2	142947701	142947702	rs1523707	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q22.2	NR	rs1523707-?	NR	1E-8				Illumina [7760689] (imputed)	N
1675	chr2	142949705	142949706	rs16856945	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	2q22.2		rs16856945-C	0.02	6E-6		1.786		NR [11110260] (imputed)	N
1675	chr2	142959930	142959931	rs2890652	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q22.2	NR	rs2890652-T	NR	4E-10		0.024	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1675	chr2	142959930	142959931	rs2890652	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q22.2	NR	rs2890652-T	0.817272339321985	2E-11		0.027040575	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1675	chr2	142959930	142959931	rs2890652	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	2q22.2	LRP1B	rs2890652-C	0.18	1E-10		0.09	[0.03-0.15] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1676	chr2	143043284	143043285	rs2121279	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q22.2	LRP1B	rs2121279-T	0.154	4E-7	(EA, men)	0.029	[0.018-0.04] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1676	chr2	143043284	143043285	rs2121279	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q22.2	LRP1B	rs2121279-T	0.152	2E-8	(EA)	0.025	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1676	chr2	143043284	143043285	rs2121279	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q22.2	LRP1B	rs2121279-T	0.15	2E-8		0.024	[0.016-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1677	chr2	143197722	143197723	rs4503939	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left  ventricle systolic dysfunction	30,201 European ancestry individuals	NA	2q22.2	NR	rs4503939-T	0.0672	3E-7		0.3272	[0.20-0.45] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
1677	chr2	143254722	143254723	rs10928150	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2q22.2	LRP1B, KYNU	rs10928150-A	0.46	7E-6		0.07	[0.05-0.09] unit decrease	Illumina [~ 8300000] (imputed)	N
1678	chr2	143331370	143331371	rs9808531	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q22.2	NR	rs9808531-T	0.481113	6E-9		0.040953573	[0.027-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1678	chr2	143354361	143354362	rs76891664	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	2q22.2	AC016706.1, KYNU	rs76891664-G	0.08911	2E-7	(males)	1.16	[0.73-1.59] unit decrease	Illumina [9955952] (imputed)	N
1678	chr2	143370826	143370827	rs189163756	29527006	Warrier V	2018-03-12	Transl Psychiatry	Genome-wide analyses of self-reported empathy: correlations with autism, schizophrenia, and anorexia nervosa.	Empathy quotient	22,318 European ancestry males, 24,543 European ancestry females	NA	2q22.2	KYNU	rs189163756-C	0.04125	1E-7		1.33	[0.84-1.82] unit decrease	Illumina [9955952] (imputed)	N
1679	chr2	143446471	143446472	rs7561705	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.2		rs7561705-A	0.472	3E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1679	chr2	143456237	143456238	rs6429985	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q22.2	ARHGAP15	rs6429985-?	NR	9E-6	(CE 18:0)	1.8235736	[1.02-2.63] unit increase	Affymetrix [at least 2500000] (imputed)	N
1679	chr2	143465251	143465252	rs140767541	33350037	Cheng CF	2020-12-22	J Gene Med	Genetic Risk Score Constructed from Common Genetic Variants is Associated with Cardiovascular Disease Risk in Type 2 Diabetes Mellitus.	Cardiovascular disease in type 2 diabetes	326 Han Chinese ancestry cases, 1,209 Han Chinese ancestry controls	68 Han Chinese ancestry cases, 317 Han Chinese ancestry controls	2q22.2	intergenic	rs140767541-A	NR	7E-6		3.5	[2.02-6.04]	Affymetrix, Illumina [NR] (imputed)	N
1679	chr2	143476735	143476736	rs16857949	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	393 European ancestry cases, 5,287 European ancestry controls, 155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	532 European ancestry cases, 7,103 European ancestry controls, 53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	2q22.2		rs16857949-A	NR	1E-6		0.56		Illumina [NR] (imputed)	N
1680	chr2	143543489	143543490	rs55670624	34226506	Cox J	2021-06-29	Transl Psychiatry	Genome-wide association study of stimulant dependence.	Stimulant dependence	155 African American or Afro-Caribbean cases, 5,603 African American or Afro-Caribbean controls	53 African American or Afro-Caribbean cases, 3,299 African American or Afro-Caribbean controls	2q22.2		rs55670624-T	NR	3E-7		1.87		Illumina [NR] (imputed)	N
1680	chr2	143553641	143553642	rs1490949	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	2q22.2	LRP1B, KYNU	rs1490949-T	NR	4E-8	(female)	0.9686	[0.96-0.98]	Affymetrix [9869154] (imputed)	N
1680	chr2	143553641	143553642	rs1490949	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	2q22.2	NR	rs1490949-T	NR	1E-9		0.9457		Affymetrix [9869154] (imputed)	N
1680	chr2	143556961	143556962	rs13388996	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.2	NR	rs13388996-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1680	chr2	143569643	143569643	rs36144130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	2q22.2		rs36144130-TC	NR	1E-17		0.0655	[0.05-0.081] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
1680	chr2	143577406	143577407	rs7604689	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		LRP1B, KYNU	rs7604689-C	NR	6E-14		0.97	[0.96-0.98]	Affymetrix [9869154] (imputed)	N
1680	chr2	143635718	143635719	rs77035103	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q22.2	NR	rs77035103-?	NR	4E-7		2251.8657	NR unit decrease	Illumina [2379855]	N
1681	chr2	143675231	143675232	rs78201785	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q22.2	KYNU	rs78201785-C	0.0463	7E-17	(KYNU)	1.01316	[0.78-1.25] unit increase	Illumina [8683751] (imputed)	N
1681	chr2	143719950	143719951	rs16858410	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.2	NR	rs16858410-?	NR	7E-6				Affymetrix [NR]	N
1681	chr2	143759690	143759691	rs352889	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Toenail selenium levels	4,162 European ancestry individuals	NA	2q22.2	KYNU, ARHGAP15	rs352889-A	0.39	4E-6		0.016	[0.0082-0.0238] unit increase	Affymetrix, Illumina [2378986] (imputed)	N
1681	chr2	143774714	143774714	rs756711255	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	2q22.2	NR	rs756711255-?	NR	9E-6		0.0969791	[0.054-0.14] unit decrease	NR [13958389] (imputed)	N
1681	chr2	143777497	143777498	rs7425446	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q22.2	KYNU	rs7425446-A	0.19301500000000005	2E-8		1.0434245	[1.02799881345576-1.05908152354951]	NR [9572556] (imputed)	N
1682	chr2	143789865	143789866	rs60431337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q22.2		rs60431337-C	NR	6E-17		0.0297	[0.023-0.037] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1682	chr2	143789865	143789866	rs60431337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q22.2		rs60431337-C	NR	5E-10		0.0233	[0.016-0.031] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1682	chr2	143789865	143789866	rs60431337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q22.2		rs60431337-C	NR	9E-13		0.0247	[0.018-0.031] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1682	chr2	143789865	143789866	rs60431337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q22.2	KYNU	rs60431337-C	0.128144	1E-11		0.022801299	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143793813	143793814	rs12477146	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KYNU	5,355 Icelandic ancestry individuals	NA	2q22.2		rs12477146-A	0.2064	1E-145		0.550856	[0.51-0.59] unit decrease	Illumina [7506463] (imputed)	N
1682	chr2	143796693	143796694	rs3768844	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	2q22.2	NR	rs3768844-?	NR	5E-41	(KYNU)			Illumina [~ 4000000] (imputed)	N
1682	chr2	143796693	143796694	rs3768844	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q22.2	KYNU	rs3768844-A	0.78859375	7E-83	(KYNU, 4559_64_2)	0.56878376	[0.51-0.62] unit increase	Illumina [> 1000000] (imputed)	N
1682	chr2	143798188	143798189	rs9013	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q22.2	KYNU	rs9013-G	0.1579739	1E-81	(Kynureninase)	1.045	[0.95-1.14] unit decrease	Affymetrix [509946]	N
1682	chr2	143799906	143799907	rs3816193	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q22.2	KYNU	rs3816193-A	0.18	2E-58	(Kynureninase, KYNU.4559.64.2)	0.5	[0.44-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
1682	chr2	143801674	143801675	rs59441438	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q22.2		rs59441438-T	0.873	3E-8				Affymetrix [10369434] (imputed)	N
1682	chr2	143801674	143801675	rs59441438	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2q22.2		rs59441438-T	0.873	3E-12				Affymetrix [10369434] (imputed)	N
1682	chr2	143801674	143801675	rs59441438	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q22.2		rs59441438-T	0.873	1E-26				Affymetrix [10369434] (imputed)	N
1682	chr2	143801674	143801675	rs59441438	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q22.2	NR	rs59441438-G	NR	6E-11		0.0246	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1682	chr2	143831598	143831599	rs74847330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q22.2		rs74847330-G	0.125936	3E-39		0.044302348	[0.038-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143831598	143831599	rs74847330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q22.2		rs74847330-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1682	chr2	143831598	143831599	rs74847330	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q22.2	KYNU, ARHGAP15	rs74847330-A	0.88	2E-9		1.048	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1682	chr2	143831598	143831599	rs74847330	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q22.2	intergenic	rs74847330-G	0.1263	5E-21		0.05088468	[0.04-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1682	chr2	143831598	143831599	rs74847330	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q22.2	intergenic	rs74847330-G	0.1263	1E-13		0.04040727	[0.03-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1682	chr2	143844507	143844508	rs79645820	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to SSRI (symptom remission)	1,828 European ancestry individuals	NA	2q22.2	ARHGAP15, KYNU	rs79645820-?	NR	5E-6		2.8465698	NR	Affymetrix, Illumina [7062950] (imputed)	N
1682	chr2	143854933	143854934	rs73962318	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q22.2	NR	rs73962318-?	NR	6E-7		0.3471	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q22.2	ARHGAP15	rs16858573-C	0.125112	2E-9		0.02021404	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q22.2	ARHGAP15	rs16858573-C	0.125153	8E-13		0.02392078	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.2	NR	rs16858573-C	0.143202	1E-14				Affymetrix, Illumina [19872809] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q22.2	NR	rs16858573-T	0.8752	9E-11		1.0607829	[1.04-1.08]	Affymetrix [15688218] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q22.2	NR	rs16858573-T	0.8752	2E-10		1.0546298	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
1682	chr2	143875724	143875725	rs16858573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q22.2		rs16858573-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1682	chr2	143883951	143883952	rs354703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q22.2	NR	rs354703-C	0.593464	4E-14		0.01478	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1682	chr2	143884296	143884297	rs72992640	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	2q22.2	Intergenic	rs72992640-T	NR	2E-6		0.0268041	[0.016-0.038] unit increase	Illumina [13520550] (imputed)	N
1682	chr2	143886436	143886437	rs354707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.2	NR	rs354707-A	0.541795	2E-13				Affymetrix, Illumina [23114412] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q22.2		rs79716587-A	NR	7E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q22.2	ARHGAP15	rs79716587-A	0.126128	1E-26		0.03571484	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q22.2	ARHGAP15	rs79716587-A	0.125743	8E-34		0.041233923	[0.035-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q22.2	ARHGAP15	rs79716587-A	0.125756	1E-29		0.03834211	[0.032-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.2	NR	rs79716587-A	0.120139	3E-34				Affymetrix, Illumina [24649327] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q22.2	NR	rs79716587-A	0.124095	9E-37		0.035863	[0.03-0.041] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.2	NR	rs79716587-A	0.119675	6E-13				Affymetrix, Illumina [24588908] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q22.2	NR	rs79716587-A	0.123765	1E-15		0.022578	[0.017-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.2	NR	rs79716587-G	0.877451	1E-35				Affymetrix, Illumina [17210439] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q22.2	NR	rs79716587-G	0.873874	4E-39		0.038163	[0.032-0.044] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q22.2	NR	rs79716587-A	0.126529	4E-16		0.024455	[0.019-0.03] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q22.2		rs79716587-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q22.2	ARHGAP15	rs79716587-A	0.1275	2E-13		0.03991238	[0.029-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1682	chr2	143886818	143886819	rs79716587	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q22.2	ARHGAP15	rs79716587-A	0.1274	1E-17		0.04680996	[0.036-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1682	chr2	143892138	143892139	rs354719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q22.2	ARHGAP15	rs354719-T	0.824743	1E-18		0.02578378	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1682	chr2	143892138	143892139	rs354719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q22.2	ARHGAP15	rs354719-T	0.824734	1E-15		0.02345348	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1682	chr2	143892138	143892139	rs354719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q22.2	ARHGAP15	rs354719-T	0.824736	3E-14		0.02243566	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1683	chr2	143948354	143948355	rs35713119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q22.2		rs35713119-C	NR	8E-9		0.0155	[0.01-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1683	chr2	143958744	143958745	rs2034604	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis	1,944 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	151 European ancestry cases,  6,019 European ancestry controls, 150 European and other ancestry cases, 2,696 European and other ancestry controls	2q22.2	ARHGAP15	rs2034604-T	0.527	8E-16		1.36	[1.26-1.47]	Illumina [NR] (imputed)	N
1683	chr2	143959095	143959096	rs62171698	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q22.2	ARHGAP15	rs62171698-C	0.859392	9E-10		0.0120557	[0.0082-0.0159] unit decrease	Affymetrix [12370749]	N
1683	chr2	143959095	143959096	rs62171698	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.2	NR	rs62171698-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1683	chr2	143959095	143959096	rs62171698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.2		rs62171698-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1683	chr2	143960592	143960593	rs6710871	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q22.2	NA	rs6710871-A	0.1422	3E-16		0.0193	[0.015-0.024] unit increase	NR [~ 27400000] (imputed)	N
1683	chr2	143960592	143960593	rs6710871	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q22.2	NR	rs6710871-A	NR	3E-19		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1683	chr2	143967391	143967392	rs1376749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q22.2		rs1376749-A	NR	4E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1683	chr2	144020973	144020974	rs2381401	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	2q22.2	ARHGAP15	rs2381401-T	NR	2E-9		1.15	[1.1-1.2]	Illumina [NR] (imputed)	N
1683	chr2	144020973	144020974	rs2381401	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	2q22.2	ARHGAP15	rs2381401-T	NR	1E-7		1.179	[1.12-1.24]	Illumina [5719137] (imputed)	N
1683	chr2	144021711	144021712	rs13002158	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q22.2	NA	rs13002158-A	0.8133	1E-12		0.0154	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1684	chr2	144053437	144053438	rs7601485	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.2	Intergenic	rs7601485-A	0.4923	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1684	chr2	144076739	144076740	rs2381408	25387706	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of electrodermal activity: a genome-wide association study.	Electrodermal activity	Up to 4,424 European ancestry twins and their parents	NA	2q22.2	ARHGAP15	rs2381408-?	NR	7E-6	(SCR Frequency)	0.549	[0.31-0.79] unit increase	Illumina [527829]	N
1684	chr2	144096233	144096234	rs17229439	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	2q22.2	NR	rs17229439-?	NR	8E-6				NR [NR] (imputed)	N
1684	chr2	144096373	144096374	rs10176394	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	2q22.2	ARHGAP15	rs10176394-T	0.1431	2E-6		1.7701	[NR] unit decrease	Illumina [1216189] (imputed)	N
1684	chr2	144106557	144106558	rs12621976	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.2	NR	rs12621976-G	0.01045	3E-10	(LGALS4)	0.668	NR unit increase	Illumina [1671387] (imputed)	N
1684	chr2	144118751	144118752	rs1343763	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	2q22.2	AC096558.1	rs1343763-A	0.63	5E-6		0.49	[0.27-0.71] unit increase	Illumina [5833901] (imputed)	N
1684	chr2	144137352	144137353	rs5026760	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2q22.2	ARHGAP15	rs5026760-A	NR	2E-8		0.00959659	[0.0062-0.013] unit decrease	Affymetrix [10061374] (imputed)	N
1684	chr2	144146310	144146311	rs7606205	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q22.2	ARHGAP15	rs7606205-A	0.7007	4E-13		0.1207	[0.088-0.153] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1684	chr2	144151801	144151802	rs2381473	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q22.2	NR	rs2381473-T	0.432347	1E-6		1.0695187	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1684	chr2	144152538	144152539	rs17824247	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q22.2		rs17824247-T	0.5802	1E-11		56.87535	z score increase	NR [6814003]	N
1684	chr2	144152538	144152539	rs17824247	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q22.2	NR	rs17824247-T	0.5924	2E-12		0.0158471	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1684	chr2	144153343	144153344	rs10496949	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q22.2		rs10496949-G	0.418	8E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1684	chr2	144153343	144153344	rs10496949	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q22.2	ARHGAP15	rs10496949-G	0.421834	8E-13		0.0151015	[0.011-0.019] unit decrease	NR [16516521] (imputed)	N
1684	chr2	144154887	144154888	rs62172064	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.2	ENSG00000257640, ENSG00000228655	rs62172064-T	NR	9E-11		0.0322161	[0.022-0.042] unit decrease	Affymetrix [NR]	N
1684	chr2	144158176	144158177	rs1320139	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs1320139-C	0.427	8E-26		0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1684	chr2	144158417	144158418	rs12469628	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q22.3	ARHGAP15	rs12469628-?	NR	2E-11		0.0405042	[0.029-0.052] unit decrease	Illumina [4804024] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q22.3		rs140397066-G	NR	4E-12		0.1062	[0.076-0.136] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q22.3		rs140397066-G	NR	6E-50		0.2331	[0.2-0.26] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00676299999999996	1E-22		0.1435716	[0.11-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00673999999999997	4E-10		0.093172416	[0.064-0.122] unit increase	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00677000000000005	1E-24		0.15096483	[0.12-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00676299999999996	5E-18		0.12722953	[0.098-0.156] unit decrease	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00676900000000003	5E-32		0.1731509	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.00676699999999997	5E-80		0.27808058	[0.25-0.31] unit decrease	Affymetrix [93095623] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs140397066-A	0.993357	3E-16				Affymetrix, Illumina [23467995] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q22.3	NR	rs140397066-A	0.993143	4E-19		0.111909	[0.087-0.136] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs140397066-A	0.993354	8E-77				Affymetrix, Illumina [23472807] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q22.3	NR	rs140397066-A	0.993141	6E-81		0.241485	[0.22-0.27] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1684	chr2	144162104	144162105	rs140397066	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs140397066-G	0.0089	4E-21		0.2047654	[0.16-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1684	chr2	144162608	144162609	rs10189912	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q22.3	NR	rs10189912-A	NR	1E-11		6.778	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1684	chr2	144162824	144162825	rs78490412	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q22.3	ARHGAP15	rs78490412-T	0.1699	1E-7		0.0449	[0.028-0.062] unit decrease	NR [8041861] (imputed)	N
1684	chr2	144166522	144166523	rs6430030	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs6430030-T	0.4246	3E-10		0.012918022	[0.0089-0.0169] unit increase	Affymetrix [up to 18485882] (imputed)	N
1684	chr2	144168634	144168635	rs7596264	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	2q22.3	ARHGAP15	rs7596264-G	0.8696	5E-6		0.4449	[0.25-0.64] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1684	chr2	144168666	144168667	rs62172117	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q22.3		rs62172117-A	0.3572	1E-17		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1685	chr2	144183001	144183002	rs10200533	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.3	ENSG00000257640, ENSG00000228655	rs10200533-A	NR	4E-12		0.021283837	[0.015-0.027] unit increase	Affymetrix [NR]	N
1685	chr2	144187515	144187516	rs12991555	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q22.3	Intergenic	rs12991555-A	0.6362	7E-10		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1685	chr2	144200042	144200043	rs13010737	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q22.3	ARHGAP15	rs13010737-A	0.313	7E-7		0.035	[0.021-0.049] unit decrease	Affymetrix [7947838] (imputed)	N
1685	chr2	144200696	144200697	rs76217384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2q22.3		rs76217384-G	NR	7E-10		0.0439	[0.03-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1685	chr2	144200696	144200697	rs76217384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs76217384-G	0.231608	7E-13		0.01881045	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1685	chr2	144200696	144200697	rs76217384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs76217384-G	0.231605	1E-15		0.020870684	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1685	chr2	144200696	144200697	rs76217384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs76217384-G	0.23163	3E-23		0.026010022	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1685	chr2	144200696	144200697	rs76217384	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2q22.3	ARHGAP15	rs76217384-G	0.231528	7E-10		0.043917254	[0.03-0.058] unit increase	Affymetrix [7288503] (imputed)	N
1685	chr2	144204203	144204203	rs537526720	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q22.3	ARHGAP15	rs537526720-CT	0.0787	2E-11		0.0237	[0.017-0.031] unit increase	Affymetrix [18391927] (imputed)	N
1685	chr2	144215810	144215811	rs13411140	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	2q22.3	NR	rs13411140-T	0.3627	3E-8		5.539	[NR] unit decrease	Affymetrix [7003540] (imputed)	N
1685	chr2	144218020	144218021	rs6704667	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q22.3		rs6704667-?	NR	4E-8				NR [NR]	N
1685	chr2	144218020	144218021	rs6704667	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q22.3		rs6704667-?	NR	3E-8				NR [NR]	N
1685	chr2	144220880	144220881	rs7349383	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q22.3	ARHGAP15	rs7349383-T	0.838863	1E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1685	chr2	144225214	144225215	rs13024996	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2q22.3	NR	rs13024996-A	0.3676	3E-13		0.015542448	[0.011-0.02] unit decrease	Affymetrix [10613246] (imputed)	N
1685	chr2	144225214	144225215	rs13024996	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2q22.3	NR	rs13024996-A	0.352	1E-13		0.013351299	[0.0098-0.0169] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr2	144225214	144225215	rs13024996	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	2q22.3	ARHGAP15, AC096558.1, RP11-570L15.2	rs13024996-A	0.37	4E-13		0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1685	chr2	144225214	144225215	rs13024996	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q22.3	NR	rs13024996-A	0.364	2E-15		0.010881	[0.0082-0.0136] unit decrease	NR [~ 9732723] (imputed)	N
1685	chr2	144225214	144225215	rs13024996	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2q22.3	NR	rs13024996-A	0.364	6E-13		0.010912645	[0.0079-0.0139] unit decrease	NR [~ 10000000] (imputed)	N
1685	chr2	144231308	144231309	rs4273169	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q22.3	ENSG00000228655, ENSG00000257640	rs4273169-?	NR	3E-12		0.014703349	[0.011-0.019] unit increase	NR [7306098]	N
1685	chr2	144232490	144232491	rs28380327	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q22.3	ARHGAP15	rs28380327-A	0.6317	5E-25		1.0378		Affymetrix [11880941] (imputed)	N
1685	chr2	144232490	144232491	rs28380327	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q22.3	ARHGAP15	rs28380327-A	0.6317	5E-25		1.0408108		Affymetrix [11880941] (imputed)	N
1685	chr2	144232490	144232491	rs28380327	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q22.3		rs28380327-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1685	chr2	144233250	144233251	rs34112283	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q22.3		rs34112283-?	NR	4E-8				NR [NR]	N
1685	chr2	144233250	144233251	rs34112283	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q22.3	NR	rs34112283-C	0.146	5E-6		0.022158096	[0.013-0.032] unit increase	Affymetrix [up to 6544775] (imputed)	N
1685	chr2	144237035	144237036	rs13413953	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	2q22.3	ARHGAP15	rs13413953-T	0.6396	8E-9		0.0061	[0.0039-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
1685	chr2	144237035	144237036	rs13413953	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	2q22.3	ARHGAP15	rs13413953-T	0.6401	3E-9		0.013782091	[0.0092-0.0183] unit increase	Affymetrix [11514936] (imputed)	N
1685	chr2	144237035	144237036	rs13413953	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q22.3	NR	rs13413953-G	NR	3E-9		0.01436	[0.0096-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
1685	chr2	144239302	144239303	rs10048736	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q22.3	NR	rs10048736-A	NR	1E-9		6.084	z score decrease	Affymetrix [10847151] (imputed)	N
1685	chr2	144248717	144248718	rs35789697	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	2q22.3	ARHGAP15	rs35789697-A	0.358174	3E-9		5.94	z score decrease	NR [10847151] (imputed)	N
1685	chr2	144248761	144248762	rs35825582	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q22.3	NR	rs35825582-A	0.475	8E-8		0.00581148	[0.0037-0.0079] unit decrease	NR [9732723] (imputed)	N
1685	chr2	144248761	144248762	rs35825582	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q22.3	NR	rs35825582-?	NR	3E-8		0.01277	[0.0082-0.0173] unit decrease	Affymetrix [10847151] (imputed)	N
1685	chr2	144248761	144248762	rs35825582	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.3	ENSG00000257640	rs35825582-A	NR	2E-10		0.01958628	[0.014-0.026] unit increase	Affymetrix [NR]	N
1685	chr2	144248904	144248905	rs34030812	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q22.3	NR	rs34030812-T	NR	2E-8		5.636	z score decrease	Affymetrix [10847151] (imputed)	N
1685	chr2	144248904	144248905	rs34030812	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q22.3	NR	rs34030812-?	NR	3E-8		0.01334	[0.0086-0.018] unit increase	Affymetrix [10847151] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	2q22.3	NR	rs13428598-C	0.61	1E-12		0.65	[0.47-0.83] unit decrease	Affymetrix [39302896] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q22.3	NR	rs13428598-C	0.371769	2E-11		0.043688968	[0.031-0.056] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q22.3		rs13428598-?	NR	5E-9				NR [7857346] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.3		rs13428598-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs13428598-T	0.3786	2E-19	(MTAG)	0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs13428598-T	0.3805	1E-29	(MTAG)	0.0152	[0.013-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q22.3	Intergenic	rs13428598-T	0.3903	1E-18	(MTAG)	0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q22.3	Intergenic	rs13428598-T	0.3903	1E-11		0.0198	[0.014-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	ENSG00000257640	rs13428598-T	NR	3E-9		5.939	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	2q22.3	ARHGAP15	rs13428598-T	0.375	5E-9		5.85	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
1685	chr2	144250486	144250487	rs13428598	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.3	ENSG00000257640	rs13428598-T	NR	4E-13		0.022993902	[0.017-0.029] unit increase	Affymetrix [NR]	N
1685	chr2	144255200	144255201	rs12465778	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q22.3	ARHGAP15, RP11-570L15.2	rs12465778-C	0.4451	2E-8		0.01143035	[0.0075-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1685	chr2	144255200	144255201	rs12465778	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.3	ENSG00000257640	rs12465778-T	NR	3E-10		0.01840696	[0.013-0.024] unit decrease	Affymetrix [NR]	N
1685	chr2	144261656	144261657	rs35125029	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	2q22.3	NR	rs35125029-G	0.62	6E-9		0.97	[0.97, 0.98]	Affymetrix [39302896] (imputed)	N
1685	chr2	144261656	144261657	rs35125029	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q22.3	NR	rs35125029-?	NR	3E-7				Illumina [7427422] (imputed)	N
1685	chr2	144263032	144263033	rs10180461	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2q22.3	ARHGAP15	rs10180461-?	NR	3E-8		0.0138352	[0.009-0.0187] unit increase	Affymetrix [25921788] (imputed)	N
1685	chr2	144263279	144263280	rs10191758	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	2q22.3		rs10191758-?	NR	2E-8				NR [7857346] (imputed)	N
1685	chr2	144263279	144263280	rs10191758	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q22.3	ENSG00000257640	rs10191758-?	NR	2E-14		7.685	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1685	chr2	144263279	144263280	rs10191758	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q22.3	ENSG00000257640	rs10191758-?	NR	4E-8		5.506	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1685	chr2	144263279	144263280	rs10191758	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2q22.3	ARHGAP15	rs10191758-A	0.6065	3E-9	(Adults)	5.929	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1685	chr2	144263279	144263280	rs10191758	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	2q22.3	ARHGAP15	rs10191758-A	0.6065	3E-9		5.929	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
1685	chr2	144270447	144270448	rs10204230	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	2q22.3	ARHGAP15	rs10204230-?	NR	9E-10		0.0149402	[0.01-0.02] unit increase	Affymetrix [25921788] (imputed)	N
1685	chr2	144270447	144270448	rs10204230	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q22.3	NR	rs10204230-T	NR	6E-9		5.807	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1685	chr2	144270622	144270623	rs10928182	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	TNF-alpha gene expression levels in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	2q22.3	ARHGAP15	rs10928182-G	0.74	3E-9		1.711	[1.15-2.27] unit decrease	Illumina [10307610] (imputed)	N
1685	chr2	144271135	144271136	rs77327606	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARHGAP15	rs77327606-?	NR	2E-8		1.45901	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr2	144271135	144271136	rs77327606	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARHGAP15	rs77327606-?	NR	1E-9	(female)	1.22386	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1685	chr2	144272375	144272376	rs4233567	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	2q22.3	ARHGAP15	rs4233567-T	0.364	9E-10		0.0161	[0.011-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1685	chr2	144272375	144272376	rs4233567	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q22.3	ENSG00000257640	rs4233567-T	NR	1E-8		0.01837871	[0.012-0.025] unit increase	Affymetrix [NR]	N
1685	chr2	144280517	144280518	rs10207679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q22.3		rs10207679-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1685	chr2	144290245	144290246	rs12614491	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q22.3	NR	rs12614491-A	0.476031	2E-10		0.0196666	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
1685	chr2	144296927	144296927	rs199504199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q22.3		rs199504199-GT	NR	4E-12		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1685	chr2	144297520	144297521	rs143768697	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q22.3		rs143768697-?	NR	2E-13		0.0168422	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
1685	chr2	144302612	144302613	rs10084164	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q22.3	ARHGAP15	rs10084164-G	0.65658	3E-11		0.0127899	[0.009-0.0166] unit decrease	NR [13737936] (imputed)	N
1685	chr2	144302612	144302613	rs10084164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q22.3		rs10084164-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1686	chr2	144314246	144314247	rs6734367	30661054	Schafmayer C	2019-01-19	Gut	Genome-wide association analysis of diverticular disease points towards neuromuscular, connective tissue and epithelial pathomechanisms.	Diverticular disease	31,964 European ancestry cases, 419,135 European ancestry controls	4,611 European ancestry cases, 31,478 European ancestry controls	2q22.3	ARHGAP15	rs6734367-T	0.178	4E-55		1.17	[1.15-1.19]	Affymetrix [11977111] (imputed)	N
1686	chr2	144314246	144314247	rs6734367	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q22.3	ARHGAP15	rs6734367-G	0.821932560631907	4E-44		0.0097186	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1686	chr2	144328533	144328534	rs141234028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q22.3		rs141234028-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1686	chr2	144348857	144348858	rs4662344	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q22.3	ARHGAP15	rs4662344-T	0.177	5E-9		1.26	[1.16-1.36]	Illumina [32463443] (imputed)	N
1686	chr2	144348857	144348858	rs4662344	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticular disease	5,426 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	5,970 Danish ancestry cases, 3,020 Danish ancestry controls	2q22.3	ARHGAP15	rs4662344-T	0.177	2E-18		1.23	[1.17-1.29]	Illumina [32463443] (imputed)	N
1686	chr2	144352422	144352423	rs13415550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q22.3	ARHGAP15, RP11-570L15.1	rs13415550-T	0.215801	4E-10		0.01686619	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1686	chr2	144352422	144352423	rs13415550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q22.3	ARHGAP15, RP11-570L15.1	rs13415550-T	0.215779	9E-11		0.017490095	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1686	chr2	144352422	144352423	rs13415550	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q22.3	NR	rs13415550-T	0.218563	5E-11		0.014821	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1686	chr2	144360269	144360270	rs4662209	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2q22.3	NR	rs4662209-C	NR	1E-6		1.69	[1.37-2.09]	Illumina [13976150] (imputed)	N
1686	chr2	144373940	144373941	rs2731553	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q22.3		rs2731553-A	0.7544	1E-10		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1686	chr2	144373940	144373941	rs2731553	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q22.3	ARHGAP15	rs2731553-C	0.24350000000000005	2E-14		1.0310341		Affymetrix [11880941] (imputed)	N
1686	chr2	144376032	144376033	rs10928190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs10928190-T	0.452	8E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1686	chr2	144376032	144376033	rs10928190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs10928190-T	0.452	2E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1686	chr2	144391280	144391281	rs72857992	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q22.3	NA	rs72857992-C		2E-8		0.0114209	[0.0074-0.0154] unit increase	Illumina [13288253] (imputed)	N
1686	chr2	144428607	144428608	rs10928195	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	2q22.3	ARHGAP15	rs10928195-C	0.08	4E-6	(weight)	0.36	[NR] lb. decrease	Affymetrix [408775]	N
1687	chr2	144478982	144478983	rs73961845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs73961845-A	0.617	3E-15		0.0114	[0.0087-0.0141] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1687	chr2	144478982	144478983	rs73961845	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs73961845-A	0.617	3E-17	(MTAG)	0.0114	[0.0089-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1687	chr2	144495181	144495182	rs74598335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q22.3		rs74598335-T	0.294154	3E-8		0.0165626	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
1687	chr2	144503214	144503215	rs6721148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs6721148-T	0.3972	2E-13	(MTAG)	0.0124	[0.0091-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1687	chr2	144560020	144560021	rs11688237	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q22.3	ARHGAP15, GTDC1	rs11688237-?	NR	4E-15		1.1185683	[1.09-1.15]	Illumina [13537761] (imputed)	N
1688	chr2	144579793	144579794	rs34372952	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs34372952-C	0.842229	1E-11		0.0782693	[0.054-0.103] increase	Affymetrix [11014269] (imputed)	N
1688	chr2	144598431	144598432	rs1257344	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q22.3	ARHGAP15, LOC100130702	rs1257344-?	0.511	3E-6		2.3255813	[1.61-3.33]	Illumina [1556551]	N
1688	chr2	144641788	144641789	rs34707540	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	2q22.3	NR	rs34707540-C	0.631	8E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	4.56621	[NR]	Affymetrix [> 650000] (imputed)	N
1688	chr2	144690116	144690117	rs1011397	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	GTDC1	rs1011397-G	0.197	8E-6	(Energy balance )	0.04	[NR] kcal/d increase	Illumina [899892]	N
1690	chr2	144879659	144879660	rs10445654	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	2q22.3	GTDC1	rs10445654-?	NR	5E-7	(BM4D-weighted model)			Illumina [501584]	N
1690	chr2	144916803	144916804	rs34624793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs34624793-T	0.8636	2E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1690	chr2	144950247	144950248	rs16823566	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	2q22.3		rs16823566-T	0.925141	8E-21		1.0773697	[1.06-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
1691	chr2	144990547	144990548	rs72855540	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q22.3	GTDC1	rs72855540-G	NR	2E-7		1.1495	NR	Affymetrix, Illumina [8278136] (imputed)	N
1691	chr2	145043652	145043653	rs13419007	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	2q22.3	GTDC1	rs13419007-?	NR	3E-6				Illumina [501584]	N
1691	chr2	145061130	145061131	rs62169186	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q22.3	NR	rs62169186-?	NR	3E-6	(Latino)	0.7196	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1691	chr2	145078774	145078775	rs62169190	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q22.3	NR	rs62169190-C	0.170974	3E-8		0.046053138	[0.03-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1691	chr2	145078774	145078775	rs62169190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q22.3	Intergenic	rs62169190-T	0.1886	3E-8		0.0204	[0.013-0.028] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1691	chr2	145078774	145078775	rs62169190	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	NR	rs62169190-?	NR	4E-6		4.636	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1691	chr2	145079064	145079065	rs10496963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.3		rs10496963-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1692	chr2	145141540	145141541	rs12991836	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q22.3	ZEB2	rs12991836-?	NR	7E-10		0.012876864	[0.0088-0.017] unit decrease	NR [7306098]	N
1692	chr2	145141540	145141541	rs12991836	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q22.3	ZEB2	rs12991836-?	NR	6E-10		1.0626993	[1.04-1.08]	Illumina [8000000] (imputed)	N
1692	chr2	145141540	145141541	rs12991836	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q22.3	NR	rs12991836-C	NR	4E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1692	chr2	145141540	145141541	rs12991836	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	2q22.3	ZEB2	rs12991836-C	0.348	1E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	NR	5E-19		0.048	[0.037-0.059] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	0.103091	5E-19		0.0479588	[0.037-0.059] unit increase	Illumina [13479135] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	NR	6E-35		0.0767	[0.065-0.089] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	0.102754	6E-35		0.0766523	[0.064-0.089] unit decrease	Illumina [13476266] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	NR	5E-22		0.0603	[0.048-0.072] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	0.102783	5E-22		0.0602823	[0.048-0.073] unit decrease	Illumina [13477028] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	NR	2E-53		0.0965	[0.084-0.109] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2q22.3		rs79710863-C	0.102797	2E-53		0.096533	[0.084-0.109] unit decrease	Illumina [13476299] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.907336	6E-19		0.062425	[0.049-0.076] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.9798790000000001	2E-28				Affymetrix, Illumina [24246363] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.905848	6E-28		0.084876	[0.07-0.1] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.979102	2E-19				Affymetrix, Illumina [21126107] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.905847	3E-19		0.06789	[0.053-0.083] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.979873	1E-41				Affymetrix, Illumina [20825802] (imputed)	N
1692	chr2	145145052	145145053	rs79710863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	2q22.3	NR	rs79710863-T	0.905849	1E-40		0.104037	[0.089-0.119] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1692	chr2	145182956	145182957	rs10210063	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	2q22.3	ZEB2	rs10210063-?	NR	4E-29		0.08847	[0.073-0.104] unit decrease novel	Illumina [6108953] (imputed)	N
1692	chr2	145184315	145184316	rs10192562	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	2q22.3	ZEB2	rs10192562-?	NR	1E-10		0.05113	[0.036-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1692	chr2	145193325	145193326	rs10164806	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	2q22.3	ZEB2	rs10164806-?	NR	4E-11		0.05205	[0.037-0.068] unit increase novel	Illumina [6108953] (imputed)	N
1692	chr2	145193325	145193326	rs10164806	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2q22.3	ZEB2	rs10164806-?	NR	6E-23		0.0778	[0.062-0.093] unit decrease novel	Illumina [6108953] (imputed)	N
1692	chr2	145208192	145208193	rs12105918	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	2q22.3	NR	rs12105918-?	0.06	4E-9		1.25	1.16-1.34	Illumina [7437091] (imputed)	N
1692	chr2	145208192	145208193	rs12105918	23184150	Henrion M	2012-11-25	Hum Mol Genet	Common variation at 2q22.3 (ZEB2) influences the risk of renal cancer.	Renal cell carcinoma	2,215 European ancestry cases, 8,566 European ancestry controls	3,739 European ancestry cases, 8,786 European ancestry controls	2q22.3	ZEB2	rs12105918-?	0.056	2E-8		1.45	[1.20-1.75]	Illumina [284377]	N
1692	chr2	145209915	145209916	rs72858496	25826619	Henrion MY	2015-03-31	PLoS One	Common variation at 1q24.1 (ALDH9A1) is a potential risk factor for renal cancer.	Renal cell carcinoma	2,215 Western European ancestry cases, 8,566 Western European ancestry controls	2,844 European ancestry cases, 7,270 European ancestry controls	2q22.3	ZEB2	rs72858496-T	NR	2E-7	(Western European)	1.46	[1.32-1.60]	Illumina [up to 12182133] (imputed)	N
1692	chr2	145214420	145214421	rs1427298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs1427298-T	0.4264	1E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1692	chr2	145214420	145214421	rs1427298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs1427298-T	0.4264	1E-9	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1692	chr2	145214606	145214607	rs7599224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	2q22.3		rs7599224-G	NR	2E-8		0.0365	[0.024-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1692	chr2	145214606	145214607	rs7599224	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	2q22.3	ZEB2	rs7599224-G	0.446085	1E-8		0.045817293	[0.03-0.062] unit increase	Affymetrix [7288503] (imputed)	N
1692	chr2	145220905	145220906	rs11893047	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	NR	rs11893047-?	NR	2E-6		4.76	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1692	chr2	145223154	145223155	rs28475137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q22.3	ZEB2	rs28475137-T	0.147673	6E-12		0.021778736	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1692	chr2	145223619	145223620	rs13382811	23933737	Khor CC	2013-08-09	Hum Mol Genet	Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia.	Myopia (severe)	1,603 East Asian ancestry cases, 3,427 East Asian ancestry controls	1,241 East Asian ancestry cases, 3,559 East Asian ancestry controls	2q22.3	ZFHX1B	rs13382811-T	0.275	6E-10		1.26	[NR]	Illumina [250531]	N
1692	chr2	145225070	145225071	rs62169220	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		2q22.3	ZEB2	rs62169220-A	0.85	6E-6		0.018	[0.01-0.026] dioptres decrease	NR [5901671] (imputed)	N
1692	chr2	145226369	145226370	rs10187371	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q22.3	ZEB2	rs10187371-T	0.1862	5E-11		6.561	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1693	chr2	145230445	145230446	rs17739820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q22.3		rs17739820-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1693	chr2	145241752	145241752	rs10529605	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q22.3	ZEB2	rs10529605-TTGTGTGTGTGTGTGTGTGTG	0.683811	3E-9		0.014360865	[0.0096-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1693	chr2	145241752	145241752	rs10529605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q22.3	NR	rs10529605-I	0.683369	3E-10		0.013849	[0.0096-0.0181] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1693	chr2	145261173	145261174	rs2033159	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q22.3	NR	rs2033159-C	0.2341	5E-10		0.0352	[0.024-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1693	chr2	145270591	145270592	rs6740731	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q22.3	ZEB2	rs6740731-A	0.173067	4E-6		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1693	chr2	145270591	145270592	rs6740731	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q22.3	LOC101928455, ZEB2, ZEB2-AS1	rs6740731-A	0.176	4E-9		0.051	[0.033-0.069] unit increase	Affymetrix [7947838] (imputed)	N
1693	chr2	145286558	145286559	rs17678683	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2q22.3	ZEB2, TEX41	rs17678683-G	0.08	4E-8		1.08	[1.07-1.10]	Illumina [5167567] (imputed)	N
1693	chr2	145286558	145286559	rs17678683	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q22.3	LOC101928455, ZEB2, ZEB2-AS1	rs17678683-T	0.9108	3E-7		0.056	[0.034-0.078] unit decrease	NR [8041861] (imputed)	N
1693	chr2	145286558	145286559	rs17678683	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2q22.3	ZEB2, AC074093.1	rs17678683-G	0.089	1E-7		1.08	[1.05-1.11]	Affymetrix [9149595] (imputed)	N
1693	chr2	145286558	145286559	rs17678683	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2q22.3	ZEB2, ACO74093.1	rs17678683-G	0.09	9E-6		1.08	[1.05-1.11]	Affymetrix, Illumina [8600000] (imputed)	N
1693	chr2	145286558	145286559	rs17678683	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	2q22.3	ZEB2, ACO74093.1	rs17678683-G	0.087681	3E-9		1.1	[1.07- 1.14]	Affymetrix, Illumina [8600000] (imputed)	N
1693	chr2	145288340	145288341	rs16823835	31791832	Koks S	2019-11-12	J Arthroplasty	The Genetic Variations Associated With Time to Aseptic Loosening After Total Joint Arthroplasty.	Time to aseptic loosening in total joint arthroplasty	97 individuals	NA	2q22.3	LOC101928455	rs16823835-G	NR	3E-6		3.99	[NR] years increase	Illumina [up to 600000]	N
1693	chr2	145308213	145308214	rs4662226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs4662226-C	0.143058	1E-36				Affymetrix, Illumina [19905671] (imputed)	N
1693	chr2	145316406	145316407	rs4662380	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	2q22.3	LINC01412	rs4662380-C	NR	2E-12		1.4636		Illumina [592007] (imputed)	N
1693	chr2	145319072	145319073	rs6722387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	2q22.3	NR	rs6722387-A	0.729629	2E-24		0.057422	[0.046-0.068] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1693	chr2	145324976	145324977	rs16823866	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	2q22.3	LINC01412	rs16823866-?	NR	4E-18		0.0557	[0.043-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1693	chr2	145324976	145324977	rs16823866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2q22.3	AC010090.1	rs16823866-C	0.1951	6E-11		0.02902272	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1693	chr2	145331723	145331724	rs59998168	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	2q22.3		rs59998168-C	0.267896	7E-21		0.0477954	[0.038-0.058] unit decrease	Illumina [13469940] (imputed)	N
1693	chr2	145341258	145341259	rs16823886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	2q22.3		rs16823886-A	NR	8E-14		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
1693	chr2	145341258	145341259	rs16823886	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	2q22.3	LINC01412, ZEB2	rs16823886-?	NR	1E-9		6.07	NR z score decrease	Illumina [8500000] (imputed)	N
1693	chr2	145343425	145343426	rs1559964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	2q22.3	intergenic	rs1559964-G	0.1359	4E-12		0.03567338	[0.026-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1693	chr2	145343425	145343426	rs1559964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	2q22.3	intergenic	rs1559964-G	0.136	5E-11		0.03413307	[0.024-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1693	chr2	145348056	145348057	rs4662382	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs4662382-T	0.1309	7E-9	(MTAG)	0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1693	chr2	145348233	145348234	rs58811157	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs58811157-T	0.01916	7E-13	(ME1)	0.1494	NR unit decrease	Illumina [1671387] (imputed)	N
1693	chr2	145351119	145351120	rs1427506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q22.3		rs1427506-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1693	chr2	145351820	145351821	rs7355746	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	ZEB2	rs7355746-A	0.014	5E-7	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
1693	chr2	145358202	145358203	rs74640750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs74640750-A	0.8734	3E-9	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1693	chr2	145358202	145358203	rs74640750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs74640750-A	0.8733	5E-11	(MTAG)	0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1694	chr2	145359768	145359768	rs112572441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q22.3		rs112572441-ACGTG	0.825631	1E-12		0.020651512	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1694	chr2	145359908	145359909	rs10496964	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	2q22.3	ZEB2	rs10496964-C	0.844	9E-9	(GAE)	1.47	[1.28-1.67]	Affymetrix [4560000] (imputed)	N
1694	chr2	145368851	145368852	rs2162571	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q22.3		rs2162571-G	0.175	3E-14		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1694	chr2	145376115	145376116	rs16823921	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	2q22.3	TEX41	rs16823921-G	0.333	6E-7				Affymetrix [432921]	N
1694	chr2	145377210	145377211	rs75490288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2q22.3		rs75490288-A	0.175014	3E-13		0.021415489	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1694	chr2	145377210	145377211	rs75490288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q22.3		rs75490288-A	0.175015	5E-12		0.02018488	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1694	chr2	145380619	145380620	rs12470032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q22.3		rs12470032-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1694	chr2	145381224	145381225	rs13020210	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Childhood absence epilepsy	778 European ancestry cases, 24,218 European ancestry controls	NA	2q22.3	ZEB2	rs13020210-G	0.2	2E-8		5.58	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q22.3		rs1427499-G	0.71015	3E-14		0.018478405	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs1427499-G	0.709701	4E-18				Affymetrix, Illumina [19872809] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q22.3	NR	rs1427499-G	0.710269	1E-17		0.018666	[0.014-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q22.3	NR	rs1427499-G	0.710264	2E-20		0.021037	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	2q22.3	NR	rs1427499-A	0.289	2E-14		1.043	[1.03-1.05]	NR [8968716] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q22.3	DKFZp686O1327	rs1427499-G	0.711	3E-10		0.0159	[0.011-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q22.3	NR	rs1427499-G	0.711	2E-22		0.0116019	[0.0093-0.0139] unit decrease	NR [9732723] (imputed)	N
1694	chr2	145400316	145400317	rs1427499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q22.3		rs1427499-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1694	chr2	145411479	145411480	rs139679725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q22.3		rs139679725-T	NR	4E-12		0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1694	chr2	145412270	145412271	rs74697736	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs74697736-A	0.2881	3E-12		0.016718179	[0.012-0.021] unit increase	Affymetrix [11514654] (imputed)	N
1694	chr2	145412270	145412271	rs74697736	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q22.3	NR	rs74697736-A	0.287239	2E-15	(Conditioned on chr2:146283610, chr2:146140132)	0.022296347	[0.017-0.028] unit increase	NR [~ 10000000] (imputed)	N
1694	chr2	145430212	145430213	rs747565049	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q22.3		rs747565049-A	NR	3E-6		1.63902		Affymetrix, Illumina [62056310] (imputed)	N
1694	chr2	145435198	145435199	rs6745079	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	2q22.3	NR	rs726857-?,rs6745079-?	NR	4E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1694	chr2	145442189	145442190	rs980772	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	2q22.3	NR	rs980772-T	0.67	5E-8		0.21	[0.13-0.29] unit decrease	Affymetrix [9231066] (imputed)	N
1694	chr2	145442189	145442190	rs980772	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	2q22.3	NR	rs980772-T	0.67	5E-8		0.21	[0.13-0.29] unit decrease	Affymetrix [9231066] (imputed)	N
1694	chr2	145447880	145447881	rs12477849	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TEX41	rs12477849-?	NR	1E-11		4.13582	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1694	chr2	145450245	145450246	rs116603234	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q22.3	NR	rs116603234-?	NR	8E-6		0.330116	[0.19-0.47] unit increase	NR [13958389] (imputed)	N
1694	chr2	145453967	145453968	rs76909456	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q22.3	TEX41	rs76909456-G	0.24	2E-10		0.48	[0.32-0.64] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1694	chr2	145453967	145453968	rs76909456	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q22.3	TEX41	rs76909456-G	0.2417	2E-9		0.4687	[0.32-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1694	chr2	145465575	145465576	rs10928224	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q22.3	NR	rs10928224-A	0.487	1E-9		0.00943307	[0.0064-0.0125] unit increase	NR [9732723] (imputed)	N
1694	chr2	145465575	145465576	rs10928224	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q22.3	TEX41	rs10928224-T	0.719	5E-13		0.122	[0.089-0.155] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1694	chr2	145470121	145470121	rs111929228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q22.3		rs111929228-CCG	NR	5E-8		0.0139	[0.0088-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1694	chr2	145470121	145470121	rs111929228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q22.3	NR	rs111929228-I	0.679161	3E-12		0.015467	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1694	chr2	145475411	145475412	rs12471698	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q22.3	TEX41	rs12471698-T	0.33	6E-15		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q22.3	TEX41	rs3856364-G	0.680679	8E-11		0.015398514	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q22.3	TEX41	rs3856364-G	0.680705	2E-13		0.017422538	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs3856364-G	0.682082	8E-10				Affymetrix, Illumina [23114412] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q22.3	NR	rs3856364-G	0.67981	3E-10		0.012622	[0.0087-0.0166] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	2q22.3	TEX41	rs3856364-C	0.3184	2E-7	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	2q22.3	TEX41	rs3856364-C	0.3184	5E-7		0.1389	NR mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1694	chr2	145477216	145477217	rs3856364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q22.3		rs3856364-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1694	chr2	145481826	145481827	rs11691685	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q22.3	TEX41	rs11691685-?	NR	5E-8	(subset analysis)			Illumina [130052]	N
1694	chr2	145486866	145486867	rs72852164	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q22.3		rs72852164-G	NR	2E-9		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1695	chr2	145491989	145491989	rs145374401	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q22.3	TEX41	rs145374401-C	0.441276	2E-9		0.013668025	[0.0092-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1695	chr2	145492381	145492382	rs11681525	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q22.3	Intergenic	rs11681525-?		3E-7				Illumina [9725440] (imputed)	N
1695	chr2	145492381	145492382	rs11681525	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q22.3	Intergenic	rs11681525-?		5E-7				Illumina [9560910] (imputed)	N
1695	chr2	145492381	145492382	rs11681525	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q22.3	NR	rs11681525-G	0.91	2E-9	(EA)	1.1134332		Affymetrix, Illumina [~ 9000000] (imputed)	N
1695	chr2	145492381	145492382	rs11681525	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q22.3	intergenic	rs11681525-G	0.91	4E-11	(EA)	1.1577194	[1.11-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1695	chr2	145509614	145509615	rs11683692	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q22.3	TEX41	rs11683692-T	0.9456	2E-8		0.0472	[0.031-0.063] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1695	chr2	145509614	145509615	rs11683692	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q22.3	TEX41	rs11683692-T	0.9444	1E-8		0.048213	[0.032-0.065] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1695	chr2	145597355	145597356	rs10196836	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	NR	rs10196836-?	NR	2E-6		4.792	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1695	chr2	145601056	145601057	rs1384781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs1384781-T	0.362	3E-11	(MTAG)	0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1695	chr2	145603305	145603306	rs11690035	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q22.3	NR	rs11690035-T	0.0749	6E-6	(EA)	0.0534	[0.03-0.077] unit increase	Illumina [~ 11800000] (imputed)	N
1695	chr2	145605196	145605200	rs10538039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q22.3		rs10538039-C	NR	1E-9		0.0247	[0.017-0.033] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1695	chr2	145605196	145605200	rs10538039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q22.3		rs10538039-C	NR	1E-9		0.0279	[0.019-0.037] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1695	chr2	145611312	145611313	rs115458621	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Halomonadaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q22.3		rs115458621-G	0.100544	4E-9		0.0277357	[0.018-0.037] unit decrease	Illumina [7980478] (imputed)	N
1695	chr2	145616898	145616899	rs7560871	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.3	NR	rs7560871-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1695	chr2	145616898	145616899	rs7560871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.3		rs7560871-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1695	chr2	145616898	145616899	rs7560871	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q22.3	NA	rs7560871-A	0.0712	6E-11		0.0219	[0.015-0.029] unit increase	NR [~ 27400000] (imputed)	N
1695	chr2	145616898	145616899	rs7560871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs7560871-A	0.0739	5E-13		0.0193	[0.014-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1695	chr2	145616898	145616899	rs7560871	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs7560871-A	0.0739	2E-15	(MTAG)	0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr2	145622870	145622871	rs28414958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs28414958-A	0.0727	9E-18	(MTAG)	0.0272	[0.021-0.033] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1696	chr2	145622870	145622871	rs28414958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q22.3	Intergenic	rs28414958-G	0.9273	4E-12		0.0302	[0.022-0.039] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1696	chr2	145627507	145627508	rs191954601	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TEX41	rs191954601-?	NR	3E-11	(male)	4.36763	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1696	chr2	145631178	145631179	rs76808502	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q22.3	ZEB2	rs76808502-C	0.0291	5E-9		0.005	[0.0032-0.0068] unit increase	Affymetrix [15275733] (imputed)	N
1696	chr2	145634152	145634153	rs6738560	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q22.3		rs6738560-A	NR	2E-21		0.0176	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1696	chr2	145638364	145638365	rs6430070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q22.3	TEX41, RP11-514A9.1	rs6430070-A	0.697198	1E-17		0.020642255	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1696	chr2	145638364	145638365	rs6430070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q22.3	TEX41, RP11-514A9.1	rs6430070-A	0.697221	4E-27		0.026043076	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1696	chr2	145638765	145638766	rs72853300	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	2q22.3	NR	rs72853300-T	0.153	2E-8		0.019	[0.012-0.026] unit increase	NR [~ 10000000] (imputed)	N
1696	chr2	145644544	145644545	rs4662402	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q22.3	TEX41	rs4662402-T	0.7034	3E-11		0.0255857	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1696	chr2	145646071	145646072	rs1438896	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q22.3	TEX41	rs1438896-T	0.3	2E-15		0.234	[0.18-0.29] unit increase	Affymetrix [~ 9800000] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q22.3		rs17479393-T	NR	1E-17		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs17479393-T	0.226899	2E-33				Affymetrix, Illumina [24653286] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs17479393-T	0.227269	5E-35				Affymetrix, Illumina [24558453] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q22.3		rs17479393-?	NR	2E-47				NR [~ 8900000] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q22.3	NR	rs17479393-T	0.248111	3E-38		0.0457455	[0.039-0.053] unit increase	NR [19129689] (imputed)	N
1696	chr2	145653286	145653287	rs17479393	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q22.3	ZEB2	rs17479393-?	NR	8E-30		1.201923	[1.17-1.24]	Illumina [13537761] (imputed)	N
1696	chr2	145656031	145656032	rs187839668	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	2q22.3	TEX41	rs187839668-G	0.0723574	7E-6		0.0184779	[0.01-0.027] unit increase	Affymetrix [9463307] (imputed)	N
1696	chr2	145658302	145658303	rs148912137	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 7)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q22.3		rs148912137-T	0.23569869	3E-12				Illumina [7417619] (imputed)	N
1696	chr2	145664860	145664860	rs143288026	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q22.3		rs143288026-CA	NR	6E-16		0.0229	[0.017-0.028] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1696	chr2	145664860	145664860	rs143288026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q22.3	TEX41	rs143288026-CA	0.234183	1E-25		0.027509337	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1696	chr2	145669167	145669168	rs75706763	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q22.3	ZEB2	rs75706763-A	0.948316	2E-8		0.0177039	[0.012-0.024] unit decrease	Affymetrix [12370749]	N
1696	chr2	145678113	145678114	rs10928235	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs10928235-A	0.7482	3E-9		0.01378778	[0.0093-0.0183] unit increase	Affymetrix [11514654] (imputed)	N
1696	chr2	145678113	145678114	rs10928235	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q22.3	NR	rs10928235-T	NR	6E-10		0.0441531	NR unit increase	NR [NR] (imputed)	N
1696	chr2	145681569	145681570	rs58117425	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q22.3		rs58117425-A	0.21	4E-33		11.99	z score increase	Affymetrix [9061022] (imputed)	N
1696	chr2	145681569	145681570	rs58117425	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q22.3	DKFZp686O1327	rs58117425-G		8E-12		0.192	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1696	chr2	145690101	145690102	rs186733086	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q22.3	NR	rs186733086-?	NR	8E-6		0.0076902	[0.0043-0.0111] unit increase	Affymetrix [805426] (imputed)	N
1696	chr2	145695906	145695907	rs1371044	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	2q22.3		rs1371044-?	NR	1E-12				NR [9705931] (imputed)	N
1696	chr2	145695906	145695907	rs1371044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q22.3	NR	rs1371044-A	0.234155	5E-35		0.026924	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1696	chr2	145695906	145695907	rs1371044	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q22.3	NR	rs1371044-A	0.234132	8E-37		0.02768	[0.023-0.032] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1696	chr2	145701991	145701992	rs786250	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	2q22.3	TEX41	rs786250-?	NR	5E-7		0.019	[0.011-0.027] SD units increase	Affymetrix [13995214] (imputed)	N
1696	chr2	145701991	145701992	rs786250	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q22.3	ZEB2	rs786250-T	0.346	2E-13		0.0091	[0.0067-0.0115] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1696	chr2	145703651	145703652	rs17407658	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q22.3	ZEB2	rs17407658-A	0.510937	3E-8	(16 ms)	0.0304089	[0.019-0.041] unit increase	Affymetrix [10000000] (imputed)	N
1696	chr2	145703651	145703652	rs17407658	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q22.3	ZEB2	rs17407658-A	0.510937	2E-8	(14 ms)	0.0307888	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1696	chr2	145714353	145714354	rs1438898	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q22.3	AC074093.1	rs1438898-A	0.750731	4E-32		1.0612026	NR	Affymetrix [~ 9600000] (imputed)	N
1696	chr2	145720138	145720139	rs72854462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs72854462-G	0.232916	2E-20				Affymetrix, Illumina [24332387] (imputed)	N
1696	chr2	145720138	145720139	rs72854462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q22.3	NR	rs72854462-G	0.248582	5E-23		0.021152	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1696	chr2	145720138	145720139	rs72854462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q22.3		rs72854462-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1696	chr2	145725529	145725530	rs11674165	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q22.3	RALGPS2, ANGPTL1	rs11674165-?		3E-10				NR [7428630] (imputed)	N
1696	chr2	145725529	145725530	rs11674165	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q22.3	NR	rs11674165-?		3E-17				NR [7428630] (imputed)	N
1696	chr2	145726620	145726621	rs55944332	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q22.3	TEX41	rs55944332-G	0.24	4E-7	(EA, initial)	0.26	[0.16-0.36] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1696	chr2	145726620	145726621	rs55944332	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q22.3	TEX41	rs55944332-G	0.24	2E-19		0.267	[0.21-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1696	chr2	145726655	145726656	rs12151653	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q22.3	NR	rs12151653-C	0.7352	6E-10		0.0267	[0.018-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1696	chr2	145728993	145728994	rs72854464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q22.3		rs72854464-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1696	chr2	145733055	145733056	rs397872980	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q22.3		rs397872980-C	NR	7E-12		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1696	chr2	145737422	145737423	rs17479840	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q22.3	TEX41	rs17479840-C	0.984189	4E-13		0.0548052	[0.04-0.07] unit increase	NR [13737936] (imputed)	N
1697	chr2	145753279	145753280	rs786247	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q22.3	ZEB2	rs786247-A	0.6415	9E-10		0.012397167	[0.0084-0.0164] unit decrease	Illumina [9339358] (imputed)	N
1697	chr2	145753423	145753424	rs726857	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q22.3	TEX41	rs726857-T	0.633164	9E-12		0.0141142	[0.01-0.018] unit decrease	NR [13737936] (imputed)	N
1697	chr2	145753423	145753424	rs726857	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	2q22.3	NR	rs726857-?,rs6745079-?	NR	4E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
1697	chr2	145755448	145755449	rs6722557	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q22.3	TEX41	rs6722557-G	0.748503	2E-26		0.0240964	[0.02-0.029] unit decrease	NR [13737936] (imputed)	N
1697	chr2	145755448	145755449	rs6722557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q22.3		rs6722557-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1697	chr2	145755448	145755449	rs6722557	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q22.3		rs6722557-?	NR	4E-16		0.0199309	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
1697	chr2	145756259	145756260	rs786244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q22.3		rs786244-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1697	chr2	145759397	145759398	rs111932165	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q22.3	NR	rs111932165-G	NR	5E-10		0.0167	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1697	chr2	145759720	145759721	rs2950790	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q22.3		rs2950790-G	0.254846	1E-16		0.0834439	[0.063-0.104] decrease	Affymetrix [11014269] (imputed)	N
1697	chr2	145760352	145760353	rs67969609	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q22.3	TEX41	rs67969609-G	0.071	2E-8		1.07	[1.05-1.10]	Illumina [34740186] (imputed)	N
1697	chr2	145760352	145760353	rs67969609	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q22.3	TEX41	rs67969609-G	0.21	5E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1697	chr2	145764745	145764746	rs12691702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs12691702-T	0.748598	9E-12				Affymetrix, Illumina [24649327] (imputed)	N
1697	chr2	145764745	145764746	rs12691702	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q22.3	NR	rs12691702-?	NR	1E-41				Illumina [at least 7383741] (imputed)	N
1697	chr2	145769101	145769102	rs3901734	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q22.3		rs3901734-T	0.23	3E-21		9.48	z score increase	Affymetrix [9061022] (imputed)	N
1697	chr2	145769101	145769102	rs3901734	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q22.3	NR	rs3901734-T	0.2548	1E-17				NR [9056863] (imputed)	N
1697	chr2	145775398	145775399	rs1006923	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	2q22.3	TEX41	rs1006923-T	0.677	5E-12		0.029	[0.021-0.037] unit increase	Affymetrix [~ 10446505] (imputed)	N
1697	chr2	145775398	145775399	rs1006923	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	2q22.3	TEX41	rs1006923-?	NR	4E-10		0.025	[0.017-0.033] SD units decrease	Affymetrix [13995214] (imputed)	N
1697	chr2	145783281	145783282	rs2246363	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q22.3	intergenic	rs2246363-G		4E-24		0.025	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1697	chr2	145783281	145783282	rs2246363	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2q22.3	TEX41	rs2246363-A	0.747	1E-9		0.02472458	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1697	chr2	145787049	145787050	rs1371045	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q22.3		rs1371045-T	0.23	1E-16		8.3	z score increase	Affymetrix [9061022] (imputed)	N
1697	chr2	145787049	145787050	rs1371045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q22.3	NR	rs1371045-C	0.744485	1E-11		0.014328	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1697	chr2	145787049	145787050	rs1371045	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2q22.3	STIL, CMPK1, FOXE3, FOXD2	rs1371045-?		4E-12				NR [7428630] (imputed)	N
1697	chr2	145792952	145792953	rs2243648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q22.3		rs2243648-C	0.694281	1E-8		0.0204046	[0.013-0.027] unit decrease	Illumina [13478928] (imputed)	N
1697	chr2	145793455	145793456	rs2256460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q22.3	Intergenic	rs2256460-C	0.7134	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1697	chr2	145793695	145793696	rs139860835	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q22.3		rs139860835-?	NR	2E-11		0.0545033	[0.038-0.071] unit increase	Affymetrix [20259828] (imputed)	N
1697	chr2	145796250	145796251	rs7575637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs7575637-A	0.4538	3E-14		0.0107	[0.008-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1697	chr2	145796250	145796251	rs7575637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs7575637-A	0.4538	4E-15	(MTAG)	0.0103	[0.0078-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1697	chr2	145797466	145797467	rs2255927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q22.3		rs2255927-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1697	chr2	145797828	145797829	rs1406225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q22.3	TEX41	rs1406225-T	0.2836	9E-6		0.0124	[0.0069-0.0179] unit decrease	Affymetrix [19819130] (imputed)	N
1697	chr2	145797828	145797829	rs1406225	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q22.3	TEX41	rs1406225-T	0.2836	9E-14		0.0197	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1697	chr2	145798674	145798675	rs1837294	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q22.3	NR	rs1837294-T	0.2604	1E-17				NR [9056863] (imputed)	N
1697	chr2	145801460	145801461	rs2252641	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q22.3	TEX41	rs2252641-T	0.5299	5E-13		0.0368	[0.027-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1697	chr2	145801460	145801461	rs2252641	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q22.3	TEX41	rs2252641-T	0.5285	7E-13		0.0401	[0.029-0.051] unit decrease	NR [8041861] (imputed)	N
1697	chr2	145803002	145803003	rs2252383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.3		rs2252383-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1697	chr2	145818063	145818064	rs7423637	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q22.3	intergenic	rs7423637-?	0.3086	1E-8		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
1697	chr2	145818174	145818175	rs6714110	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs6714110-A	0.0334	8E-10		0.034408204	[0.023-0.045] unit increase	Affymetrix [11514654] (imputed)	N
1697	chr2	145818431	145818432	rs4662414	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q22.3	ZEB2	rs4662414-A	0.55339	2E-9		0.0119481	[0.008-0.0159] unit increase	Affymetrix [NR] (imputed)	N
1697	chr2	145820469	145820470	rs10928240	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q22.3	BC040861	rs10928240-G	0.6014	8E-11		0.216	[0.15-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1697	chr2	145825554	145825555	rs1830321	29511194	Helgadottir A	2018-03-07	Nat Commun	Genome-wide analysis yields new loci associating with aortic valve stenosis.	Aortic valve stenosis	2,457 Icelandic ancestry cases, 349,342 Icelandic ancestry controls (including non-array genotyped, whole genome imputed individuals)	4,850 European ancestry cases, 451,731 European ancestry controls	2q22.3	TEX41	rs1830321-T	0.375	2E-13		1.15	[1.11-1.20]	Illumina [32500000] (imputed)	N
1697	chr2	145826384	145826385	rs1852684	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q22.3	NR	rs1852684-G	0.408549	3E-8		0.03939282	[0.025-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1697	chr2	145830052	145830053	rs12476923	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	2q22.3	DKFZp686O1327	rs12476923-A	0.34	5E-9		1.025	[1.017-1.034]	Affymetrix [7736308] (imputed)	N
1697	chr2	145830052	145830053	rs12476923	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	2q22.3	NR	rs12476923-A	0.33	4E-8		0.029	[0.019-0.039] unit increase	Affymetrix [NR] (imputed)	N
1697	chr2	145832734	145832735	rs957292	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	2q22.3		rs957292-A	0.635892	2E-12		0.0492482	[0.035-0.063] increase	Affymetrix [NR]	N
1697	chr2	145832734	145832735	rs957292	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	2q22.3		rs957292-A	0.636059	7E-10		0.0475114	[0.032-0.063] increase	Affymetrix [NR]	N
1697	chr2	145836428	145836429	rs7593336	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	2q22.3	TEX41	rs7593336-G	0.387	4E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
1697	chr2	145839654	145839655	rs7604735	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q22.3	TEX41	rs7604735-T	0.29	3E-12		0.049	[0.035-0.063] unit increase	Affymetrix [7947838] (imputed)	N
1697	chr2	145840280	145840281	rs34372836	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q22.3	TEX41, PABPC1P2	rs34372836-?	NR	3E-14		0.0452213	[0.034-0.057] unit increase	Illumina [4804024] (imputed)	N
1697	chr2	145848069	145848070	rs28709970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q22.3		rs28709970-T	0.36156	3E-8		0.0116336	[0.0075-0.0157] unit decrease	Illumina [13479295] (imputed)	N
1697	chr2	145868311	145868312	rs10496973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	2q22.3		rs10496973-A	NR	3E-8		0.0701	[0.045-0.095] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1697	chr2	145868311	145868312	rs10496973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	2q22.3		rs10496973-A	0.119733427	3E-8		0.07010544	[0.045-0.095] unit decrease	Illumina [13429980] (imputed)	N
1697	chr2	145872366	145872370	rs140026735	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q22.3	NR	rs140026735-?	NR	1E-22				Illumina [at least 7383741] (imputed)	N
1697	chr2	145878538	145878538	rs36111043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q22.3		rs36111043-GT	NR	4E-8		0.0107	[0.007-0.0144] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1698	chr2	145892426	145892427	rs2697329	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs2697329-A	0.71	9E-12		0.015110146	[0.011-0.019] unit decrease	Affymetrix [11514654] (imputed)	N
1698	chr2	145909652	145909653	rs1085639	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs1085639-A	0.7137	2E-13	(MTAG)	0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1698	chr2	145927314	145927315	rs274841	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	NR	rs274841-?	NR	7E-6		4.483	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1698	chr2	145938701	145938702	rs62167177	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q22.3	TEX41	rs62167177-T	0.138856916	1E-9		0.2592	[0.18-0.34] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1698	chr2	145940652	145940653	rs189402327	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2q22.3	NR	rs189402327-A	0.0126	5E-7		19.98	[12.2-27.76] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1698	chr2	145969330	145969331	rs12464832	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	2q22.3	intergenic	rs12464832-?	NR	3E-8		0.00140056	[-0.00442-0.00723] unit decrease	Affymetrix [25921788] (imputed)	N
1698	chr2	145969330	145969331	rs12464832	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	2q22.3	intergenic	rs12464832-?	NR	3E-8		0.0164867	[0.011-0.022] unit increase	Affymetrix [25921788] (imputed)	N
1698	chr2	145976941	145976942	rs113496973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs113496973-T	0.01045	9E-9	(SLC25A13)	0.3988	NR unit increase	Illumina [1671387] (imputed)	N
1698	chr2	145976941	145976942	rs113496973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs113496973-T	0.01045	5E-9	(VDAC1)	0.3362	NR unit increase	Illumina [1671387] (imputed)	N
1698	chr2	145976941	145976942	rs113496973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs113496973-T	0.01045	3E-8	(VDAC2)	0.08411	NR unit increase	Illumina [1671387] (imputed)	N
1698	chr2	145976941	145976942	rs113496973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs113496973-T	0.01045	3E-8	(SDHB)	0.1989	NR unit increase	Illumina [1671387] (imputed)	N
1698	chr2	145992600	145992601	rs10176318	31407531	Do AN	2019-08-13	Mol Genet Genomic Med	Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.	Left ventricular mass x antihypertensive treatment interaction	up to 2,068 African American individuals	up to 613 European ancestry individuals	2q22.3	U80770	rs10176318-?	NR	1E-7	(dCCB versus ACE, AA)	0.172	[0.11-0.24] unit increase	Affymetrix, Illumina [up to 2191657] (imputed)	N
1699	chr2	146015228	146015229	rs114964326	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.3	NR	rs114964326-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1699	chr2	146015228	146015229	rs114964326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.3		rs114964326-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1699	chr2	146023606	146023607	rs10928243	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q22.3	NR	rs10928243-?	NR	6E-12				Illumina [at least 7383741] (imputed)	N
1699	chr2	146034664	146034665	rs4662236	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs4662236-A	0.7018	4E-8	(MTAG)	0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1699	chr2	146044051	146044052	rs1822881	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	NR	rs1822881-A		4E-6				Illumina [2373249] (imputed)	N
1699	chr2	146045564	146045565	rs11687420	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	NR	rs11687420-A		4E-6				Illumina [2373249] (imputed)	N
1699	chr2	146071852	146071853	rs10180522	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	NR	rs10180522-A		7E-6				Illumina [2373249] (imputed)	N
1699	chr2	146092755	146092756	rs13407123	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (inattention symptoms)	1,851 individuals	155 individuals	2q22.3	NR	rs13407123-T		8E-6				Illumina [2373249] (imputed)	N
1699	chr2	146105253	146105254	rs10445672	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q22.3	intergenic	rs10445672-G	0.093	8E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1699	chr2	146113732	146113733	rs961414	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking status (current vs never)	40,456 European ancestry current smokers, 13,511 African American current smokers, 2,920 Hispanic current smokers, 59,056 European ancestry mostly never smokers, 17,751 African American mostly never smokers, 7,195 Hispanic mostly never smokers	NA	2q22.3	TEX41, PABPC1P2	rs961414-T		8E-13		0.94	[NR]	Affymetrix [~ 79000000] (imputed)	N
1699	chr2	146113732	146113733	rs961414	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs961414-T	0.5328	7E-28		0.022034988	[0.018-0.026] unit decrease	Affymetrix [11514654] (imputed)	N
1699	chr2	146114897	146114898	rs4422110	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	2q22.3	intergenic	rs4422110-C	0.42	5E-6	(male)	0.0478	[0.027-0.068] unit increase	Illumina [6380737] (imputed)	N
1699	chr2	146118068	146118069	rs1474011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q22.3	NR	rs1474011-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1699	chr2	146119017	146119018	rs1533426	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	2q22.3	ZEB2	rs1533426-?	NR	1E-260		1.4224751	[1.39-1.45]	Illumina [13729857] (imputed)	N
1699	chr2	146123057	146123058	rs7571606	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (past)	77,515 European ancestry individuals	NA	2q22.3		rs7571606-A	NR	5E-9		0.027	NR unit increase	Affymetrix [~ 79000000] (imputed)	N
1699	chr2	146123057	146123058	rs7571606	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q22.3	NR	rs7571606-A	0.464	2E-53		0.0166138	[0.014-0.019] unit increase	NR [9732723] (imputed)	N
1699	chr2	146124453	146124454	rs17481869	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia (ETV6-RUNX1 positive)	936 European ancestry cases, 16,666 European ancestry controls	365 cases, 3,461 controls	2q22.3	intergenic	rs17481869-A	0.08	2E-9		1.74	[1.45-2.09]	Affymetrix, Illumina [~ 6118121] (imputed)	N
1699	chr2	146124453	146124454	rs17481869	29632299	Vijayakrishnan J	2018-04-09	Nat Commun	Genome-wide association study identifies susceptibility loci for B-cell childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia in childhood (B cell precursor)	2,442 European ancestry cases, 14,609 European ancestry controls	NA	2q22.3	intergenic	rs17481869-?	0.07	5E-6		1.32	[1.17-1.49]	Illumina [6755715] (imputed)	N
1699	chr2	146125522	146125523	rs10427255	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q22.3		rs10427255-C	0.473	3E-26		0.012	[0.01-0.014] unit increase	NR [NR] (imputed)	N
1699	chr2	146125522	146125523	rs10427255	30899065	Wang M	2019-03-21	Sci Rep	A genome-wide association study on photic sneeze reflex in the Chinese population.	Photic sneeze reflex	874 Chinese ancestry cases, 2,543 Chinese ancestry controls	NA	2q22.3	ZEB2, ACVR2A	rs10427255-T	0.44	6E-20		1.68	[1.50-1.88]	Affymetrix [419093]	N
1699	chr2	146125522	146125523	rs10427255	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q22.3	TEX41, PABPC1P2	rs10427255-T	NR	3E-22		0.0166	[0.011-0.022] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1699	chr2	146125522	146125523	rs10427255	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q22.3	intergenic	rs10427255-C	0.46	1E-11	(sneeze)	1.32	[NR]	Illumina [535076]	N
1699	chr2	146131292	146131293	rs7421123	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q22.3	NR	rs7421123-A	0.524	8E-28		0.0160341	[0.013-0.019] unit increase	NR [9732723] (imputed)	N
1699	chr2	146140131	146140132	rs6756212	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2q22.3	TEX41, PABPC1P2	rs6756212-C		3E-29		1.04	[NR]	Affymetrix [up to 79000000] (imputed)	N
1699	chr2	146140131	146140132	rs6756212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q22.3	NR	rs6756212-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1699	chr2	146140131	146140132	rs6756212	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q22.3	NR	rs6756212-T	0.535	3E-40		0.03388805	[0.029-0.039] unit decrease	NR [~ 10000000] (imputed)	N
1699	chr2	146140131	146140132	rs6756212	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q22.3	NR	rs6756212-T	0.529	6E-14		0.0116286	[0.0086-0.0147] unit decrease	NR [9732723] (imputed)	N
1699	chr2	146145017	146145018	rs2381712	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q22.3	TEX41, PABPC1P2	rs2381712-T	0.481	4E-8		1.0570824	[1.04-1.08]	Affymetrix [9000000] (imputed)	N
1699	chr2	146145017	146145018	rs2381712	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	2q22.3	TEX41, PABPC1P2	rs2381712-?	NR	3E-16		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1699	chr2	146145017	146145018	rs2381712	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q22.3	TEX41, PABPC1P2	rs2381712-G	NR	9E-7		1.034	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
1700	chr2	146146451	146146452	rs34338764	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q22.3	NR	rs34338764-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1700	chr2	146152254	146152255	rs1516142	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.3	NR	rs1516142-?	NR	3E-7				Affymetrix [NR]	N
1700	chr2	146153406	146153407	rs16824898	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	2q22.3		rs16824898-A	0.13	2E-6		0.69	unit increase	Affymetrix [NR] (imputed)	N
1700	chr2	146155370	146155371	rs6745444	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q22.3	DKFZp686O1327	rs6745444-G	0.482	2E-20		0.0211	[0.017-0.026] unit increase	Illumina [~ 250000] (imputed)	N
1700	chr2	146156678	146156679	rs12617922	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	2q22.3	TEX41, ACVR2A	rs12617922-G	0.518	2E-10		1.066	[1.045-1.087]	Affymetrix [10894596] (imputed)	N
1700	chr2	146166520	146166521	rs12996225	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q22.3	TEX41	rs12996225-C	0.513828239	4E-6		0.1254	[0.072-0.179] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1700	chr2	146175105	146175106	rs2890772	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q22.3		rs2890772-G	0.413	2E-22		0.02	[0.016-0.024] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1700	chr2	146175105	146175106	rs2890772	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q22.3	ZEB2	rs2890772-T	0.589	4E-9		0.015461642	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
1700	chr2	146243332	146243333	rs11694518	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q22.3	TEX41, PABPC1P2	rs11694518-T	0.295	3E-9				Affymetrix, Illumina [up to 1207583] (imputed)	N
1700	chr2	146272859	146272860	rs34570306	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q22.3	ZEB2	rs34570306-T	0.527	5E-13		0.1115	[0.081-0.142] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1701	chr2	146283609	146283610	rs3076896	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q22.3	NR	rs3076896-A	0.38988	2E-16	(Conditioned on chr2:146140132)	0.022645967	[0.017-0.028] unit increase	NR [~ 10000000] (imputed)	N
1701	chr2	146302904	146302905	rs74873827	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q22.3	ZEB2	rs74873827-A	0.905	2E-8		0.020756477	[0.014-0.028] unit increase	Affymetrix [11514654] (imputed)	N
1701	chr2	146309945	146309946	rs17410535	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q22.3		rs17410535-C	NR	1E-10		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1701	chr2	146316318	146316319	rs10193706	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	2q22.3	TEX41	rs10193706-C	0.5248	1E-6		0.0072	[0.0043-0.0101] unit increase	Affymetrix [~ 7740000] (imputed)	N
1701	chr2	146316318	146316319	rs10193706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q22.3		rs10193706-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1701	chr2	146316318	146316319	rs10193706	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	2q22.3	TEX41, PABPC1P2	rs10193706-C	NR	1E-10		1.09	[1.06-1.12]	Affymetrix [28509962] (imputed)	N
1701	chr2	146347458	146347459	rs6430090	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q22.3	intergenic	rs6430090-A	0.3706	2E-11		0.0161	[0.011-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1701	chr2	146348036	146348037	rs7609422	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q22.3	NR	rs7609422-G	0.4095	3E-10		0.0295	[0.02-0.039] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1701	chr2	146350723	146350724	rs6716394	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q22.3	NR	rs6716394-G	0.4844	1E-13		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1701	chr2	146368191	146368192	rs11694449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q22.3		rs11694449-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1701	chr2	146371960	146371961	rs13396091	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q22.3	intergenic	rs13396091-A	0.4308	1E-9		0.0129	[0.0088-0.017] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1702	chr2	146420103	146420104	rs67082009	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q22.3	LOC727713	rs67082009-A	NR	4E-8	(EA)	1.0834236	[1.06-1.11]	Illumina [6627481] (imputed)	N
1702	chr2	146428030	146428031	rs2381759	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q22.3	LOC727713	rs2381759-A	NR	7E-8		1.072	[1.05-1.1]	Illumina [6627481] (imputed)	N
1702	chr2	146428030	146428031	rs2381759	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q22.3	TEX41	rs2381759-T	NR	9E-9		1.0764263	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1702	chr2	146428030	146428031	rs2381759	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q22.3	NR	rs2381759-T	NR	1E-8		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1702	chr2	146436222	146436222	rs56807175	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q22.3	U80770	rs56807175-?	NR	1E-11		1.091703	[1.07-1.12]	Illumina [8000000] (imputed)	N
1702	chr2	146439944	146439945	rs6430095	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q22.3	NR	rs6430095-?	NR	3E-9				Illumina [up to 5582932] (imputed)	N
1702	chr2	146440671	146440672	rs2381760	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q22.3	NR	rs2381760-?	NR	4E-10		1.0828488	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1702	chr2	146449002	146449002	rs5835068	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	2q22.3	NR	rs5835068-?		6E-9		0.0200966	[0.013-0.027] unit increase	Affymetrix [19400418] (imputed)	N
1702	chr2	146458737	146458738	rs10928256	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q22.3	NR	rs10928256-T	0.4192	2E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1702	chr2	146506666	146506667	rs78862952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2q22.3		rs78862952-C	0.091653	2E-12		0.027076967	[0.02-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1702	chr2	146506666	146506667	rs78862952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q22.3		rs78862952-C	0.091675	5E-11		0.025349064	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1702	chr2	146506666	146506667	rs78862952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs78862952-C	0.0915133	4E-12				Affymetrix, Illumina [19905671] (imputed)	N
1702	chr2	146506666	146506667	rs78862952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q22.3	NR	rs78862952-C	0.091893	5E-13		0.025788	[0.019-0.033] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1702	chr2	146517580	146517581	rs6757470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	2q22.3		rs6757470-G	NR	2E-8		0.1876	[0.12-0.25] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
1703	chr2	146582626	146582627	rs72862334	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q22.3	intergenic	rs72862334-A	0.888	5E-6		0.046	[0.026-0.066] unit decrease	Affymetrix [7947838] (imputed)	N
1703	chr2	146638846	146638847	rs190502327	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q22.3	TEX41	rs190502327-T	1.54111746582341E-6	2E-6		2.7788	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1703	chr2	146666256	146666257	rs10496992	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	2q22.3	intergenic	rs10496992-G	0.38	2E-6	(EA)	0.05	[0.03-0.07] unit increase	Illumina [up to 905285]	N
1704	chr2	146701354	146701355	rs36063579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q22.3		rs36063579-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1704	chr2	146729991	146729992	rs2201051	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q22.3	NR	rs2201051-?	NR	7E-7		0.101722	[0.062-0.142] unit decrease	NR [13958389] (imputed)	N
1705	chr2	146862267	146862268	rs62169487	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q22.3	NR	rs62169487-?	NR	1E-6		0.133341	[0.079-0.187] unit decrease	NR [13958389] (imputed)	N
1705	chr2	146876921	146876922	rs62169493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q22.3		rs62169493-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1705	chr2	146878531	146878532	rs222826	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2q22.3	NR	rs222826-?	NR	8E-7				Affymetrix [NR]	N
1705	chr2	146878531	146878532	rs222826	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	2q22.3	NR	rs222826-?	NR	5E-10				Affymetrix [NR]	N
1705	chr2	146882414	146882415	rs56075542	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q22.3	BC040861, PABPC1P2	rs56075542-T	0.5523	2E-19		8.994	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1705	chr2	146888707	146888708	rs61049169	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q22.3	ZEB2	rs61049169-?		5E-69				Affymetrix, Illumina [NR] (imputed)	N
1705	chr2	146888707	146888708	rs61049169	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q22.3	NR	rs61049169-A	0.4401	8E-19		0.0629	[0.049-0.077] unit increase	Illumina [~ 10600000] (imputed)	N
1705	chr2	146888707	146888708	rs61049169	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2q22.3	intergenic	rs61049169-?	NR	3E-20		1.07	[1.054-1.085]	Illumina [13762925] (imputed)	N
1705	chr2	146929768	146929769	rs570124667	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	2q22.3	ZEB2, ACVR2A	rs570124667-A	0.547	1E-8		1.176379	[1.113429-1.242889]	Affymetrix [NR] (imputed)	N
1705	chr2	146929850	146929851	rs75059037	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (itching)	676 Japanese ancestry female cases, 5,058 Japanese ancestry female controls	669 Japanese ancestry female cases, 4,945 Japanese ancestry female controls	2q22.3	NR	rs75059037-A	0.259687217	1E-6		0.23753843	[0.14-0.33] unit decrease	Affymetrix [536506]	N
1706	chr2	146934607	146934608	rs11679557	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q22.3	NR	rs11679557-C		2E-20		0.1	[0.08-0.12] unit increase	NR [NR]	N
1706	chr2	146934644	146934645	rs17734682	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q22.3	NR	rs17734682-?	NR	8E-8				Affymetrix [NR]	N
1706	chr2	146950907	146950908	rs62169544	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q22.3	ZEB2	rs62169544-G	0.5570999999999999	5E-12		0.1207	[0.086-0.155] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1706	chr2	147046591	147046592	rs6746679	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q22.3	DKFZp686O1327, PABPC1P2	rs6746679-A	0.56	2E-8	(Hispanic)	37.36	[24.29-50.43] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1706	chr2	147046591	147046592	rs6746679	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q22.3		rs6746679-?	NR	4E-6	(Hispanic)	26.31	[15.08-37.54] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1707	chr2	147084869	147084870	rs16855418	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q22.3	NR	rs16855418-?	NR	4E-6	(Latino)	0.8124	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1707	chr2	147149388	147149389	rs62168444	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	2q22.3	ZEB2, ACVR2A	rs62168444-?	0.04299999999999993	5E-6		1.2596807	[1.12-1.41]	Affymetrix, Illumina [7701827] (imputed)	N
1707	chr2	147190857	147190858	rs35743822	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q22.3	PDE11A	rs35743822-?	NR	8E-6		0.159769	[0.089-0.23] unit increase	NR [13958389] (imputed)	N
1708	chr2	147241758	147241759	rs10928298	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q22.3	NR	rs10928298-?	NR	8E-6		0.0077952	[0.0044-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1708	chr2	147256215	147256216	rs71430048	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q22.3	NR	rs71430048-A	0.01045	2E-10	(LGALS3BP)	0.037	NR unit increase	Illumina [1671387] (imputed)	N
1708	chr2	147292647	147292648	rs13429725	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x other green vegetables (green pepper and green beans) consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	2q22.3		rs13429725-G	NR	9E-6		0.186	[0.1-0.27] unit increase	Illumina [285387]	N
1709	chr2	147372023	147372024	rs10928302	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q22.3	intergenic	rs10928302-?	NR	8E-6	(progression)			Illumina [NR]	N
1709	chr2	147400899	147400900	rs11684146	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q22.3	NA	rs11684146-G	0.6304	1E-8	(Female)	1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1710	chr2	147480393	147480394	rs6756610	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q22.3	NR	rs6756610-C	0.6291	1E-9		1.038	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1710	chr2	147495354	147495355	rs76140570	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q22.3	RP11-638D14.1	rs76140570-A	0.9965	5E-6		0.676	[0.38-0.97] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1710	chr2	147514455	147514456	rs77164426	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance in more-fat diet	10,707 European ancestry women	NA	2q22.3	PABPC1P2	rs77164426-?	NR	9E-9		28.92	[NR]	NR [18717781] (imputed)	N
1710	chr2	147514455	147514456	rs77164426	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Homeostasis model assessment of insulin resistance	11,794 European ancestry women	NA	2q22.3	PABPC1P2	rs77164426-?	NR	5E-9		29.65	[NR]	NR [18717781] (imputed)	N
1710	chr2	147531216	147531217	rs6757093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q22.3	Intergenic	rs6757093-C	0.5612	2E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1710	chr2	147538992	147538993	rs11677787	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs11677787-A	0.6704	2E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1710	chr2	147544851	147544852	rs12328951	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q22.3	NR	rs12328951-?	NR	6E-6		4.54	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1710	chr2	147560831	147560832	rs4630700	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs4630700-A	0.4003	2E-14	(MTAG)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1710	chr2	147560831	147560832	rs4630700	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.3	Intergenic	rs4630700-C	0.5997	2E-15		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1710	chr2	147583186	147583187	rs35662245	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2q22.3		rs35662245-A	0.3389	6E-9		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1710	chr2	147583186	147583187	rs35662245	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q22.3	LOC10042043	rs35662245-A	NR	5E-6		1.045	[1.03-1.06]	Illumina [6627481] (imputed)	N
1710	chr2	147583186	147583187	rs35662245	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q22.3	LOC10042043	rs35662245-A	NR	2E-6	(EA)	1.0554	[1.03-1.08]	Illumina [6627481] (imputed)	N
1710	chr2	147583186	147583187	rs35662245	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q22.3	intergenic	rs35662245-A	NR	5E-7		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1710	chr2	147583186	147583187	rs35662245	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q22.3	NR	rs35662245-A	NR	1E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1711	chr2	147612733	147612734	rs4128364	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q22.3	NR	rs4128364-C	NR	4E-9		0.78	unit increase	Affymetrix [14661600] (imputed)	N
1711	chr2	147708863	147708864	rs75638626	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	2q22.3	intergenic	rs75638626-C	NR	8E-6	(Fixed effect)	0.08	[0.041-0.119] unit decrease	Illumina [4736131] (imputed)	N
1711	chr2	147715325	147715326	rs1606812	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2q22.3	PABPC1P2	rs1606812-?	NR	3E-7	(AA)	11.5	[7.19-15.81] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1712	chr2	147720234	147720235	rs13384903	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs13384903-A	0.2744	5E-9	(MTAG)	0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1712	chr2	147825688	147825689	rs16826827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q22.3	NR	rs16826827-C	0.124	1E-11		0.0111496	[0.0079-0.0144] unit decrease	NR [9732723] (imputed)	N
1712	chr2	147825688	147825689	rs16826827	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q22.3	NR	rs16826827-C	0.124	9E-9		0.022206888	[0.015-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1712	chr2	147833919	147833920	rs13007524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2q22.3		rs13007524-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1712	chr2	147835932	147835933	rs4662486	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q22.3	NR	rs4662486-?	NR	2E-6		0.0084562	[0.005-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
1712	chr2	147839829	147839830	rs374722	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q22.3	NR	rs374722-?		6E-16		0.0244932	[0.019-0.03] unit increase	Affymetrix [19400418] (imputed)	N
1712	chr2	147847889	147847890	rs2381977	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.3	NR	rs2381977-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1712	chr2	147847889	147847890	rs2381977	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q22.3	NA	rs2381977-T	0.6114	2E-17		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1713	chr2	147856195	147856199	rs367830733	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	2q22.3	NR	rs367830733-?		4E-6		2.02	[1.49-2.73]	Illumina [539473] (imputed)	N
1713	chr2	147861632	147861633	rs35999103	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q22.3	PABPC1P2	rs35999103-T	0.1547	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1713	chr2	147871113	147871114	rs1083470	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q22.3	ACVR2A	rs1083470-G	0.384281	4E-9		0.0115491	[0.0077-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
1713	chr2	147891276	147891277	rs778100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q22.3		rs778100-C	NR	3E-12		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1713	chr2	147900650	147900651	rs409696	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q22.3	ACVR2A	rs409696-G	0.423716	2E-16		0.0114218	[0.0087-0.0141] unit increase	Affymetrix [12370749]	N
1713	chr2	147901206	147901207	rs1451077	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q22.3	NA	rs1451077-A	0.5776	1E-18		0.0169	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1713	chr2	147901206	147901207	rs1451077	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q22.3	NA	rs1451077-A	0.5776	1E-18		0.0169	[0.013-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1713	chr2	147903381	147903382	rs429343	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q22.3		rs429343-A	0.42	2E-6		0.009	mmol/L increase	NR [NR] (imputed)	N
1713	chr2	147903381	147903382	rs429343	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q22.3		rs429343-A	0.42	2E-9				NR [NR] (imputed)	N
1713	chr2	147903381	147903382	rs429343	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2q22.3		rs429343-A	0.42	6E-8		0.009	mmol/L decrease	NR [NR] (imputed)	N
1713	chr2	147903381	147903382	rs429343	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q22.3		rs429343-A	0.42	4E-13		0.011	% increase	NR [NR] (imputed)	N
1713	chr2	147903801	147903802	rs778094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q22.3		rs778094-A	NR	2E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1713	chr2	147903801	147903802	rs778094	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q22.3	NR	rs778094-G	0.422	3E-9		0.014975339	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
1713	chr2	147903801	147903802	rs778094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q22.3		rs778094-?	NR	1E-19				NR [~ 8900000] (imputed)	N
1713	chr2	147919943	147919944	rs143538360	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	2q22.3	NR	rs143538360-C	NR	4E-6		1.5529	[1.37-1.74]	Illumina [11600722] (imputed)	N
1713	chr2	147920212	147920213	rs7559658	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q22.3	NR	rs7559658-C	0.1899	3E-9		0.0344	[0.023-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1713	chr2	147920212	147920213	rs7559658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q22.3	NR	rs7559658-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1713	chr2	147950120	147950121	rs1597595	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		2q22.3	LOC105373670	rs1597595-?	NR	7E-7	(AA)	0.025	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1713	chr2	147956292	147956293	rs72859280	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q22.3	NR	rs72859280-T	0.0362	4E-11		0.0241072	[0.017-0.031] unit increase	NR [~ 9732723] (imputed)	N
1713	chr2	147956292	147956293	rs72859280	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2q22.3	NR	rs72859280-T	0.0362	4E-9		0.022885324	[0.015-0.031] unit increase	NR [~ 10000000] (imputed)	N
1714	chr2	148014861	148014862	rs16827142	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Dorea)	1,068 Japanese ancestry individuals	NA	2q22.3	intergenic	rs16827142-C	0.13	2E-6	(female)	0.0686	[0.041-0.096] unit increase	Illumina [6380737] (imputed)	N
1715	chr2	148118535	148118536	rs1344981	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs1344981-T	0.7756	6E-10	(MTAG)	0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1715	chr2	148119198	148119199	rs1965148	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.3	Intergenic	rs1965148-C	0.2245	8E-11		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1716	chr2	148261039	148261040	rs13031996	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q22.3	ACVR2A	rs13031996-A	0.656	4E-9		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1716	chr2	148272454	148272455	rs13023277	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q22.3	ACVR2A	rs13023277-A	0.6618	5E-9		0.011969682	[0.0079-0.016] unit increase	Illumina [9339358] (imputed)	N
1716	chr2	148313838	148313839	rs10184962	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q22.3	NR	rs10184962-?		3E-9				NR [7428630] (imputed)	N
1716	chr2	148366043	148366044	rs11680214	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion depth 2)	6,169 Latin American individuals	NA	2q22.3		rs11680214-?	NR	9E-9				Illumina [8703729] (imputed)	N
1716	chr2	148366043	148366044	rs11680214	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion depth 1)	6,169 Latin American individuals	NA	2q22.3		rs11680214-?	NR	2E-7				Illumina [8703729] (imputed)	N
1716	chr2	148366043	148366044	rs11680214	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 3)	6,169 Latin American individuals	NA	2q22.3		rs11680214-?	NR	5E-8				Illumina [8703729] (imputed)	N
1716	chr2	148366043	148366044	rs11680214	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 2)	6,169 Latin American individuals	NA	2q22.3		rs11680214-?	NR	8E-6				Illumina [8703729] (imputed)	N
1716	chr2	148366043	148366044	rs11680214	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	2q22.3		rs11680214-?	NR	5E-7				Illumina [8703729] (imputed)	N
1716	chr2	148372719	148372720	rs10204824	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	2q22.3	NR	rs10204824-G	0.639	1E-12		0.017977731	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1716	chr2	148372719	148372720	rs10204824	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2q22.3	NR	rs10204824-G	0.639	7E-14		0.0172155	[0.013-0.022] unit decrease	NR [9732723] (imputed)	N
1717	chr2	148379964	148379965	rs17675734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q22.3		rs17675734-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1717	chr2	148380710	148380711	rs12478252	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q22.3	Intergenic	rs12478252-G	0.6093	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1717	chr2	148380768	148380769	rs12466337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q22.3	Intergenic	rs12466337-T	0.6591	7E-11		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1717	chr2	148382731	148382732	rs6732465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q22.3	Intergenic	rs6732465-A	0.4834	9E-14	(MTAG)	0.0133	[0.0098-0.0168] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1717	chr2	148382731	148382732	rs6732465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q22.3	Intergenic	rs6732465-A	0.484	2E-14	(MTAG)	0.0126	[0.0093-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1717	chr2	148382731	148382732	rs6732465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs6732465-A	0.4889	5E-10	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1717	chr2	148404026	148404027	rs2049741	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q22.3	Intergenic	rs2049741-T	0.4992	2E-10	(MTAG)	0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1717	chr2	148410886	148410887	rs7601475	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q22.3	ACVR2A, MBD5	rs7601475-?		2E-10				Affymetrix, Illumina [NR] (imputed)	N
1717	chr2	148461490	148461491	rs1528838	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	2q22.3	RNA5SP106	rs1528838-C	NR	2E-9		0.010412	[0.007-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
1717	chr2	148469592	148469593	rs10210652	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q22.3	ACVR2A	rs10210652-A	0.347252	3E-10		6.3	z score increase	NR [10847151] (imputed)	N
1717	chr2	148478335	148478336	rs7584099	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q22.3	ACVR2A, ORC4L, LOC647065	rs7584099-G	0.41	5E-7	(Triglyceride, diff)			Illumina [~ 2500000] (imputed)	N
1717	chr2	148495049	148495050	rs11686893	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q22.3	NR	rs11686893-T	NR	5E-10		6.22	z score decrease	Affymetrix [10847151] (imputed)	N
1717	chr2	148503575	148503576	rs12691765	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	2q22.3	PABPC1P2, ACVR2A	rs12691765-A	0.359	6E-6		0.027	[0.015-0.039] unit decrease	Illumina [7358575] (imputed)	N
1718	chr2	148505848	148505849	rs74819164	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	2q22.3	NR	rs74819164-?	NR	6E-7		5.003	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1718	chr2	148506863	148506864	rs1528845	30452639	Butali A	2018-11-19	Hum Mol Genet	Genomic analyses in african populations identify novel risk loci for cleft palate.	Cleft palate	205 Sub-Saharan African ancestry cases, 2,159 Sub-Saharan African ancestry controls	100 Sub-Saharan African ancestry cases, 79 African American cases, 648 Sub-Saharan African ancestry controls, 186 African American controls	2q22.3	NR	rs1528845-?	NR	6E-7		5.005	NR z-score increase	Illumina [~ 17000000] (imputed)	N
1718	chr2	148519001	148519002	rs4662551	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q22.3	NR	rs4662551-A	NR	4E-8		5.49	z score increase	Affymetrix [10847151] (imputed)	N
1718	chr2	148532637	148532638	rs62169465	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	2q22.3		rs62169465-T	NR	3E-6		0.01	[0.0061-0.0139] unit decrease	NR [7831927]	N
1718	chr2	148533468	148533469	rs1424953	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q22.3		rs1424953-G	0.33	1E-19		9.05	z score increase	Affymetrix [9061022] (imputed)	N
1718	chr2	148537060	148537061	rs730356	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q22.3	NR	rs730356-A	NR	3E-8		0.01643	[0.011-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1718	chr2	148539851	148539852	rs998884	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q22.3	NR	rs998884-G	NR	3E-10		0.01547	[0.011-0.02] unit increase	Affymetrix [10847151] (imputed)	N
1718	chr2	148539851	148539852	rs998884	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q22.3	NR	rs998884-A	0.401456	5E-14		7.53	z score decrease	NR [10847151] (imputed)	N
1718	chr2	148555488	148555489	rs2042555	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2q22.3	NR	rs2042555-A	0.418	5E-12		0.01323	[0.0095-0.017] unit increase	NR [8968716] (imputed)	N
1718	chr2	148555488	148555489	rs2042555	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	2q22.3	ENSG00000229143	rs2042555-G	NR	4E-11		0.011495	[0.0081-0.0149] unit increase	Affymetrix [18485882] (imputed)	N
1718	chr2	148555488	148555489	rs2042555	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q22.3	NR	rs2042555-A	NR	2E-14		7.676	z score increase	Affymetrix [10847151] (imputed)	N
1718	chr2	148555488	148555489	rs2042555	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q22.3	NR	rs2042555-A	NR	9E-10		0.0144	[0.0098-0.019] unit increase	Affymetrix [10847151] (imputed)	N
1718	chr2	148555488	148555489	rs2042555	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2q22.3	ACVR2A	rs2042555-A	0.41045	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
1718	chr2	148559588	148559589	rs13024567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs13024567-C	0.267406	1E-20				Affymetrix, Illumina [23467995] (imputed)	N
1718	chr2	148565386	148565387	rs138219566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q22.3		rs138219566-G	NR	3E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1718	chr2	148570944	148570945	rs13016083	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q22.3		rs13016083-C	NR	1E-14		0.0197	[0.015-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1718	chr2	148572159	148572160	rs12990959	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q22.3	ACVR2A	rs12990959-T	0.6875	1E-11		0.1271	[0.09-0.164] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1718	chr2	148575481	148575482	rs13012991	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q22.3	NR	rs13012991-C	0.3012	2E-9				NR [9056863] (imputed)	N
1718	chr2	148575871	148575872	rs11894371	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q22.3		rs11894371-C	0.33	5E-8		5.46	z score increase	Affymetrix [9061022] (imputed)	N
1718	chr2	148575871	148575872	rs11894371	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	2q22.3	ACVR2A	rs11894371-A		4E-8		0.029	[0.019-0.039] mg/dl decrease	NR [NR] (imputed)	N
1718	chr2	148582308	148582309	rs4972356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q22.3	NR	rs4972356-A	0.313083	6E-14				Affymetrix, Illumina [19872809] (imputed)	N
1718	chr2	148586133	148586134	rs142740991	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q22.3	NR	rs142740991-C	0.290037	2E-10		0.00779206	[0.0053-0.0103] unit increase	Affymetrix [16582621] (imputed)	N
1718	chr2	148586133	148586134	rs142740991	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q22.3	NR	rs142740991-C	0.290037	1E-9		0.00786752	[0.0052-0.0105] unit increase	Affymetrix [16582614] (imputed)	N
1718	chr2	148586458	148586459	rs13026220	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q22.3	ORC4	rs13026220-G	0.366	3E-11		0.265	[0.079-0.451] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1718	chr2	148599290	148599291	rs70992176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2q22.3	ACVR2A	rs70992176-C	0.2415	2E-10		0.02610869	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1718	chr2	148599290	148599291	rs70992176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	2q22.3	ACVR2A	rs70992176-C	0.2415	1E-10		0.02626074	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1718	chr2	148599290	148599291	rs70992176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	2q22.3	ACVR2A	rs70992176-C	0.2417	2E-10		0.02603609	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1718	chr2	148607437	148607438	rs79861172	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	2q22.3	ACVR2A	rs79861172-A	0.0918161	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
1718	chr2	148617379	148617380	rs17741978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q22.3		rs17741978-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1718	chr2	148618753	148618754	rs7582403	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q22.3	intergenic	rs7582403-A	0.5804400000000001	1E-13		7.418	z score decrease	Illumina [18485882] (imputed)	N
1718	chr2	148620312	148620312	rs5835174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q22.3	ACVR2A	rs5835174-CA	0.289829	3E-10		0.015619959	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1718	chr2	148627527	148627528	rs929939	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q22.3	NR	rs929939-A	0.3	2E-25		0.0205	[0.017-0.024] unit increase	NR [NR]	N
1718	chr2	148631231	148631232	rs13021972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q22.3		rs13021972-T	NR	5E-18		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1718	chr2	148633935	148633936	rs17742342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q22.3		rs17742342-A	0.802	2E-11		0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1718	chr2	148633935	148633936	rs17742342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q22.3	Intergenic	rs17742342-A	0.802	5E-12	(MTAG)	0.0113	[0.0082-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1719	chr2	148640767	148640768	rs7559714	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q22.3	ACVR2A	rs7559714-?	0.3085	5E-8		0.98	[0.97-0.99]	Affymetrix, Illumina [8494288] (imputed)	N
1719	chr2	148641808	148641809	rs2113792	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q22.3	NR	rs2113792-T	0.432939	1E-9		6.07	z score decrease	NR [10847151] (imputed)	N
1719	chr2	148643955	148643956	rs17742573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q22.3	NR	rs17742573-G	NR	7E-11		0.0296	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1719	chr2	148643955	148643956	rs17742573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q22.3	NR	rs17742573-G	NR	2E-10		0.0289	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1719	chr2	148663567	148663568	rs12987286	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q23.1	ACVR2A, ORC4	rs12987286-G	0.6381	1E-14		7.71	NR z score increase	Illumina [26237160] (imputed)	N
1719	chr2	148673389	148673390	rs12622150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q23.1		rs12622150-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1719	chr2	148673389	148673390	rs12622150	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q23.1	NR	rs12622150-T	0.419725	5E-13		7.22	z score increase	NR [10847151] (imputed)	N
1719	chr2	148680259	148680260	rs3820716	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2q23.1	ACVR2A	rs3820716-A	0.53	1E-6	(EA)	0.0039	[0.0023-0.0055] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1719	chr2	148687730	148687731	rs17692648	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q23.1	NR	rs17692648-A	NR	1E-9		6.073	z score increase	Affymetrix [10847151] (imputed)	N
1719	chr2	148687923	148687924	rs151062078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q23.1	NR	rs151062078-D	0.454549	7E-13		0.015255	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1719	chr2	148687923	148687924	rs151062078	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	2q23.1	ACVR2A	rs151062078-?	0.545	4E-6		0.019	[0.011-0.027] unit increase	Affymetrix [~ 10446505] (imputed)	N
1719	chr2	148687924	148687925	rs5835176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q23.1	ACVR2A	rs5835176-G	0.454138	5E-11		0.015131061	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1719	chr2	148687924	148687925	rs5835176	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q23.1	ACVR2A	rs5835176-G	0.4553	5E-9		0.02192664	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1719	chr2	148687940	148687941	rs397986183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q23.1		rs397986183-G	NR	1E-10		0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1719	chr2	148703964	148703965	rs3768684	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q23.1	NR	rs3768684-C	0.36653401758706	2E-14		0.014421395	[0.011-0.018] unit increase	NR [NR]	N
1719	chr2	148716427	148716428	rs2307394	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q23.1		rs2307394-T	0.6905	1E-10		0.10093726	[0.07-0.132] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q23.1	NR	rs2307394-C	0.30264899999999995	7E-12		0.00582789	[0.0041-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q23.1	NR	rs2307394-C	0.30264899999999995	8E-12		0.00670905	[0.0047-0.0087] unit increase	Affymetrix [16582965] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q23.1	ORC4	rs2307394-T	0.6315	1E-9		0.0196	[0.013-0.026] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q23.1	NR	rs2307394-T	0.3772	1E-6	(women)	0.0227	[0.014-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2q23.1	ORC4	rs2307394-T	0.683	9E-10	(EA)	0.025	[0.017-0.033] unit decrease	Illumina [1986983] (imputed)	N
1719	chr2	148716427	148716428	rs2307394	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q23.1	ACVR2A, ORC4L	rs2307394-T	0.68	2E-8		0.029	[0.019-0.039] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
1719	chr2	148729049	148729050	rs2627019	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	2q23.1	NR	rs2627019-T	NR	4E-8		0.01292	NR unit increase	NR [7259579]	N
1719	chr2	148729049	148729050	rs2627019	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q23.1	intergenic	rs2627019-T	0.43064	3E-13		7.287	z score increase	Illumina [18485882] (imputed)	N
1719	chr2	148741977	148741978	rs13031064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q23.1	NR	rs13031064-C	0.328454	2E-22				Affymetrix, Illumina [19905671] (imputed)	N
1719	chr2	148744755	148744755	rs11399347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q23.1		rs11399347-TA	NR	6E-9		0.0154	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1719	chr2	148754824	148754825	rs13008838	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	2q23.1	NR	rs13008838-A	0.3224	8E-7		0.586	[0.35-0.82] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1719	chr2	148757869	148757870	rs1598207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q23.1	NR	rs1598207-G	0.302655	1E-19		0.020189	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1719	chr2	148759655	148759656	rs7425436	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q23.1	ORC4	rs7425436-A	0.6458	3E-16		0.0024	[0.0018-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1719	chr2	148763609	148763610	rs62169549	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q23.1	NR	rs62169549-A	NR	5E-9		5.854	z score decrease	Affymetrix [10847151] (imputed)	N
1720	chr2	148776437	148776438	rs12989250	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q23.1	ORC4	rs12989250-A	0.3129	5E-15		0.0026	[0.0018-0.0034] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1720	chr2	148792664	148792665	rs12992412	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q23.1	MBD5	rs12992412-T	0.38	2E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1720	chr2	148794287	148794288	rs1234418	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q23.1	NR	rs1234418-A	0.431093	2E-12		7.02	z score decrease	NR [10847151] (imputed)	N
1720	chr2	148800729	148800730	rs12105411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q23.1		rs12105411-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1720	chr2	148801901	148801902	rs1234423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q23.1		rs1234423-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1720	chr2	148803671	148803672	rs13032786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q23.1		rs13032786-G	NR	9E-12		0.0139	[0.01-0.0178] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1720	chr2	148803671	148803672	rs13032786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q23.1	MBD5	rs13032786-G	0.298468	4E-13		0.017533392	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr2	148803671	148803672	rs13032786	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q23.1	MBD5	rs13032786-G	0.29849	2E-18		0.021231785	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr2	148803671	148803672	rs13032786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q23.1	NR	rs13032786-G	0.299909	2E-23		0.020299	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1720	chr2	148814429	148814430	rs4972322	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q23.1	NR	rs4972322-T	NR	2E-8		5.628	z score decrease	Affymetrix [10847151] (imputed)	N
1720	chr2	148815660	148815661	rs10174206	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q23.1	NR	rs10174206-T	NR	3E-10		6.307	z score decrease	Affymetrix [10847151] (imputed)	N
1720	chr2	148815660	148815661	rs10174206	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q23.1	NR	rs10174206-T	0.197658	1E-9		6.11	z score decrease	NR [10847151] (imputed)	N
1720	chr2	148834363	148834364	rs6430286	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	2q23.1	ACVR2A, ORC4, MBD5	rs6430286-G	0.576235	2E-8		0.011610381	[0.0075-0.0157] unit increase	NR [NR] (imputed)	N
1720	chr2	148834363	148834364	rs6430286	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	2q23.1	MBD5	rs6430286-G	0.576	2E-8		0.0047	[0.0031-0.0063] unit increase	NR [NR] (imputed)	N
1720	chr2	148843371	148843372	rs13015552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q23.1		rs13015552-C	0.616237	5E-8		0.0198517	[0.013-0.027] unit decrease	NR [11722792] (imputed)	N
1720	chr2	148844322	148844323	rs191280542	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	2q23.1	MBD5	rs191280542-T	8.0E-4	3E-58		31.0709	[27.28-34.86] mmHg increase	Affymetrix [NR] (imputed)	N
1720	chr2	148844368	148844369	rs1234413	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q23.1	MBD5	rs1234413-T	0.4415	7E-9		0.022345	[0.015-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1720	chr2	148853099	148853100	rs12469509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q23.1		rs12469509-C	NR	6E-29		0.0184	[0.015-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1721	chr2	148910422	148910423	rs202220108	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	2q23.1	MBD5	rs202220108-C	NR	3E-8		0.01194	unit decrease	Affymetrix [9327396] (imputed)	N
1721	chr2	148910422	148910423	rs202220108	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Loneliness	342,461 European ancestry individuals	NA	2q23.1	MBD5	rs202220108-?	NR	5E-7				Affymetrix [up to 9327396] (imputed)	N
1721	chr2	148910422	148910423	rs202220108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q23.1	MBD5	rs202220108-C	0.426284	2E-9		0.013557595	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1721	chr2	148927968	148927969	rs10928378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q23.1		rs10928378-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1721	chr2	148929707	148929708	rs13409636	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q23.1	NR	rs13409636-C	0.193396	8E-10		6.15	z score increase	NR [10847151] (imputed)	N
1721	chr2	148931460	148931461	rs1901013	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q23.1	intergenic	rs1901013-T	0.43173	6E-13		7.203	z score increase	Illumina [18485882] (imputed)	N
1721	chr2	148937369	148937370	rs1377454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q23.1		rs1377454-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1721	chr2	148955900	148955901	rs13395141	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q23.1	NR	rs13395141-T	0.432417	2E-12		7.05	z score increase	NR [10847151] (imputed)	N
1721	chr2	148955900	148955901	rs13395141	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	2q23.1	ACVR2A	rs13395141-T	0.432417	5E-8		5.45	z score increase	NR [10847151] (imputed)	N
1722	chr2	149086643	149086644	rs187650835	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2q23.1	NR	rs187650835-?		1E-6	(PCB194)	1.19	[0.72-1.66] unit decrease	Illumina [8736858] (imputed)	N
1723	chr2	149224186	149224187	rs6755778	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q23.1	EPC2	rs6755778-?	NR	9E-6	(PC 34:4)	0.29893333	[0.17-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
1723	chr2	149282765	149282766	rs6748245	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q23.1	NR	rs6748245-?	NR	2E-6	(AA)	51.1	[48.43-53.77]	Illumina [905956]	N
1724	chr2	149307075	149307076	rs1809051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q23.1		rs1809051-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1724	chr2	149319041	149319042	rs769079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q23.1		rs769079-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1724	chr2	149319041	149319042	rs769079	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q23.1		rs769079-?	NR	6E-9		0.0119292	[0.0078-0.0161] unit decrease	Affymetrix [20259828] (imputed)	N
1724	chr2	149336210	149336211	rs77857032	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q23.1	MBD5	rs77857032-A	0.99	1E-6		11.8	[7.06-16.54] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1724	chr2	149350127	149350128	rs720844	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q23.1	NR	rs720844-?	NR	3E-6	(AA)	4.33	[3.59-5.07]	Illumina [905956]	N
1724	chr2	149387967	149387968	rs10191411	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	2q23.1	EPC2	rs10191411-?	0.32	4E-6	(IL8)			Illumina [496032]	N
1724	chr2	149390434	149390435	rs1947198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q23.1		rs1947198-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1724	chr2	149408238	149408239	rs16829119	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	2q23.1	NR	rs16829119-G	0.3	8E-6	(AA)	3.78	[2.17-5.39] bpm increase	Illumina [at least 1100000] (imputed)	N
1724	chr2	149409638	149409639	rs115291000	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Relative amplitude of rest-activity cycles	77,440 European ancestry individuals	NA	2q23.1	EPC2	rs115291000-?	NR	3E-6		0.004	unit increase	Affymetrix [7969123] (imputed)	N
1724	chr2	149412004	149412005	rs76355118	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q23.1	NR	rs76355118-G	NR	3E-8		1.1627907	[NR]	Illumina [7158791] (imputed)	N
1724	chr2	149419229	149419230	rs117490883	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	2q23.1	EPC2	rs117490883-G	0.0024	3E-25		16.9998	[13.79-20.21] mmHg increase	Affymetrix [NR] (imputed)	N
1725	chr2	149424131	149424132	rs141691178	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	2q23.1	EPC2	rs141691178-G	0.0024	6E-24		16.6562	[13.42-19.89] mmHg increase	Affymetrix [NR] (imputed)	N
1725	chr2	149429178	149429179	rs200327371	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q23.1	EPC2	rs200327371-?	NR	8E-7				Illumina [8000000] (imputed)	N
1725	chr2	149433084	149433085	rs7558502	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2q23.1	NR	rs7558502-G	0.4121	9E-9		0.0501	[0.033-0.067] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1725	chr2	149455384	149455385	rs16829174	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2q23.1	EPC2	rs16829174-A	0.59	5E-9		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1725	chr2	149458449	149458450	rs112085387	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.1	NR	rs112085387-C	0.01742	2E-10	(RBMX)	0.1229	NR unit increase	Illumina [1671387] (imputed)	N
1725	chr2	149515722	149515723	rs2382249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q23.1		rs2382249-G	NR	1E-8		0.0465	[0.03-0.063] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1725	chr2	149520185	149520186	rs12622667	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q23.1	EPC2	rs12622667-C	NR	8E-9		1.0845987	[1.06-1.11]	Illumina [6627481] (imputed)	N
1725	chr2	149520185	149520186	rs12622667	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q23.1	intergenic	rs12622667-C	NR	1E-6		1.0695187	[1.04-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1725	chr2	149551657	149551658	rs2166559	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q23.1	EPC2, KIF5C	rs2166559-C	0.13890000000000002	2E-9		1.0334471		Affymetrix [11880941] (imputed)	N
1726	chr2	149557859	149557860	rs2121433	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	2q23.1	EPC2	rs2121433-?	NR	1E-6	(t-tau)			Illumina [322557]	N
1726	chr2	149559452	149559453	rs56008953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q23.1		rs56008953-G	0.585682467	2E-9		0.056072462	[0.038-0.074] unit increase	Illumina [13429769] (imputed)	N
1726	chr2	149559452	149559453	rs56008953	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2q23.1		rs56008953-G	0.585195982	2E-8		1.0482911	[1.031212994-1.065651995]	Illumina [8919992] (imputed)	N
1726	chr2	149568261	149568262	rs200576292	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2q23.1	EPC2	rs200576292-CT	0.66	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1726	chr2	149568395	149568396	rs4499362	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	2q23.1	EPC2	rs4499362-?	NR	1E-6	(t-tau/AB1-42)			Illumina [322557]	N
1728	chr2	149865249	149865250	rs6435387	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q23.2	KIF5C, LYPD6B	rs6435387-G	NR	8E-6	(5 degree of freedom test)	1.129	[1.06-1.19]	NR [1252901] (imputed)	N
1728	chr2	149934459	149934460	rs75878293	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	2q23.2		rs75878293-?	NR	7E-7		0.27	[0.16-0.38] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1728	chr2	149940485	149940486	rs2889657	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q23.2	NR	rs2889657-T	0.3276	4E-10	(Transverse Temporal)	1.8819426	[1.29-2.47] unit increase	Affymetrix, Illumina [NR]	N
1729	chr2	149956864	149956865	rs775894604	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q23.2	LYPD6B	rs775894604-A	0.9983	5E-6		1.0227	[0.58-1.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1729	chr2	149986181	149986182	rs16826589	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q23.2		rs16826589-G	0.29	8E-16		8.05	z score increase	Affymetrix [9061022] (imputed)	N
1729	chr2	149986181	149986182	rs16826589	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q23.2	NR	rs16826589-G	0.2808	2E-15				NR [9056863] (imputed)	N
1729	chr2	149992405	149992406	rs7594794	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q23.2		rs7594794-T	0.29	5E-74		18.2	z score increase	Affymetrix [9061022] (imputed)	N
1729	chr2	149992405	149992406	rs7594794	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	2q23.2		rs7594794-?	NR	2E-40				NR [9705931] (imputed)	N
1729	chr2	149994570	149994571	rs13011264	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q23.2	NR	rs13011264-A	0.701	9E-13	(Superior Temporal)	15.017611	[10.9-19.14] unit decrease	Affymetrix, Illumina [NR]	N
1729	chr2	149997298	149997299	rs12615999	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q23.2		rs12615999-T	0.29	2E-25		10.4	z score increase	Affymetrix [9061022] (imputed)	N
1729	chr2	149997298	149997299	rs12615999	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q23.2	NR	rs12615999-T	0.2807	1E-17				NR [9056863] (imputed)	N
1729	chr2	149997298	149997299	rs12615999	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q23.2	NR	rs12615999-?	NR	9E-11	(right transverse temporal)			NR [9227495] (imputed)	N
1729	chr2	150007757	150007758	rs389020	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q23.2	NR	rs389020-A	0.6734	2E-13	(Superior Temporal)	15.084094	[11.08-19.09] unit increase	Affymetrix, Illumina [NR]	N
1729	chr2	150012935	150012936	rs2046268	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	2q23.2	LYPD6B	rs2046268-?		3E-12	(Transverse temporal)			Affymetrix, Illumina [NR] (imputed)	N
1729	chr2	150012935	150012936	rs2046268	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	2q23.2	LYPD6B	rs2046268-?		2E-18	(Transverse temporal)			Affymetrix, Illumina [NR] (imputed)	N
1729	chr2	150022680	150022681	rs13008194	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	2q23.2	LYPD6B	rs13008194-?		2E-16	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
1729	chr2	150037200	150037201	rs11684511	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q23.2	NR	rs11684511-A	0.3872	1E-19	(Transverse Temporal)	2.6224527	[2.06-3.19] unit increase	Affymetrix, Illumina [NR]	N
1729	chr2	150041845	150041846	rs4667347	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q23.2	AL162431.1, STX6, MR1, IER5	rs4667347-?		3E-12				NR [7428630] (imputed)	N
1729	chr2	150051680	150051681	rs8179684	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q23.2	LYPD6B	rs8179684-?		5E-11				NR [7428630] (imputed)	N
1729	chr2	150057798	150057799	rs11894489	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2q23.2	CPT2, C1orf123, MAGOH, LRP8	rs11894489-?		7E-14				NR [7428630] (imputed)	N
1729	chr2	150057798	150057799	rs11894489	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2q23.2	WLS	rs11894489-?		3E-13				NR [7428630] (imputed)	N
1730	chr2	150130674	150130675	rs79553038	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		2q23.2	intergenic	rs79553038-G	0.015	4E-6		1.824	[1.07-2.58] unit decrease	Illumina [640625] (imputed)	N
1730	chr2	150147277	150147278	rs10432496	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2q23.2	LOC100129594	rs10432496-A		6E-8	(AA)			Illumina [NR]	N
1731	chr2	150247714	150247715	rs16826936	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	2q23.2	LYPD6	rs16826936-G	0.044	6E-6		1.4192	[0.81-2.03] unit decrease	Illumina [9520174] (imputed)	N
1731	chr2	150293318	150293319	rs951188	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	2q23.2	LYPD6, AC007394.3, FAM8A3P, MMADHC	rs951188-A	NR	4E-6	(daytime napping, weekdays)	0.7008	[0.4-1] unit decrease	Affymetrix [7141204] (imputed)	N
1731	chr2	150328911	150328912	rs1196665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q23.2		rs1196665-C	NR	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1732	chr2	150369597	150369598	rs79349911	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	2q23.2	Intergenic	rs79349911-C	0.911932	8E-7		0.361959	[0.22-0.51] unit decrease	Illumina [6969139] (imputed)	N
1732	chr2	150397217	150397218	rs7578361	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	2q23.2	intergenic	rs7578361-C	0.276	8E-6		1.4	[1.21-1.63]	Affymetrix [444044]	N
1732	chr2	150457623	150457624	rs10170236	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	2q23.3	LOC642340	rs10170236-C	0.256	4E-6		1.45	[1.24-1.69]	Affymetrix [444044]	N
1733	chr2	150509331	150509332	rs16827293	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	2q23.3	LOC642340	rs16827293-A	0.12	5E-6	(AA)	0.44	[0.25-0.63] unit decrease	Affymetrix [706791]	N
1733	chr2	150526825	150526826	rs12989809	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q23.3	LOC101929231	rs12989809-?		9E-6				Illumina [4322238] (imputed)	N
1733	chr2	150531536	150531537	rs182107583	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour in bipolar disorder	398 European ancestry bipolar disorder cases, 1,231 European ancestry bipolar disorder controls	NA	2q23.3	LOC101929321	rs182107583-C	0.04	1E-6		3.2258062	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1733	chr2	150554782	150554783	rs34263784	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI defined daily dose interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	2q23.3	AC144449.1	rs34263784-G	NR	3E-9		1.18594	[0.8-1.58] unit increase	Illumina [NR] (imputed)	N
1733	chr2	150564483	150564484	rs17801127	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	2q23.3	MMADHC	rs17801127-A	0.03	2E-7		0.154	[0.097-0.211] unit increase	Illumina [747076]	N
1734	chr2	150623991	150623991	rs146078716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q23.3	AC144449.1	rs146078716-GGA	0.379002	1E-9		0.013985202	[0.0095-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr2	150623991	150623991	rs146078716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q23.3	AC144449.1	rs146078716-GGA	0.378956	6E-12		0.015791925	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr2	150623991	150623991	rs146078716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q23.3	AC144449.1	rs146078716-GGA	0.378964	3E-10		0.014502505	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr2	150630481	150630482	rs13404323	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q23.3	AC007364.1, AC144449.1	rs13404323-T	0.0013	4E-6		0.9946	[0.57-1.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1734	chr2	150655220	150655221	rs1012307	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	2q23.3	AK057517	rs1012307-C	0.20	8E-7	(African American/African Caribbean, female)	1.44	[1.25-1.67]	Affymetrix, Illumina [~ 2100000] (imputed)	N
1734	chr2	150668683	150668684	rs13406624	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2q23.3	KIF5C, LYPD68	rs13406624-T	0.15538	8E-6		0.779	[0.698 - 0.869]	Illumina [5397657] (imputed)	N
1734	chr2	150670363	150670364	rs4346346	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	2q23.3	NR	rs4346346-A	NR	1E-6	(random effect)	1.0416667	NR	NR [6904914] (imputed)	N
1734	chr2	150697147	150697148	rs11889862	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	2q23.3	NR	rs11889862-?	NR	2E-6		0.36	[0.21-0.51] years decrease	Illumina [315418]	N
1735	chr2	150748535	150748536	rs11690195	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Neonatal total 25-hydroxyvitamin D levels (fetal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	2q23.3	MMADHC, RND3	rs11690195-?	NR	2E-6		0.47	[0.27-0.67] unit decrease	Affymetrix [622716]	N
1735	chr2	150782003	150782004	rs12479345	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q23.3	NR	rs12479345-?	NR	6E-8				Affymetrix [NR]	N
1735	chr2	150786065	150786066	rs13393120	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	1,687 Sub-Saharan African ancestry and African ancestry cases, 1,492 Sub-Saharan African ancestry and African ancestry controls, 601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	2q23.3	LINC01931, LINC01817	rs13393120-?	NR	7E-7		1.32	1.21-1.42	Illumina [7605010] (imputed)	N
1735	chr2	150849526	150849527	rs12618095	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	2q23.3	NR	rs12618095-?		9E-6				Illumina [892589]	N
1736	chr2	150907158	150907159	rs16827742	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	2q23.3	Intergenic	rs16827742-A	0.06	3E-6		0.3	[0.18-0.42] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
1736	chr2	150926832	150926833	rs114314058	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	2q23.3	MMADHC-RND3	rs114314058-C	0.018	4E-7		1.62	[1.43-1.81]	Affymetrix, Illumina [8000000] (imputed)	N
1736	chr2	150937111	150937112	rs10445747	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	2q23.3	RBM43	rs10445747-A		2E-6		0.146	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
1737	chr2	151029977	151029978	rs4667375	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q23.3	NR	rs4667375-?		2E-6				Illumina [4322238] (imputed)	N
1737	chr2	151056756	151056757	rs72855749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q23.3		rs72855749-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1737	chr2	151111029	151111030	rs62170035	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	2q23.3	NR	rs62170035-A	NR	5E-6	(Hispanic)	6.28	[3.64-8.93] unit increase	Affymetrix [14000000] (imputed)	N
1738	chr2	151126402	151126403	rs6716455	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	2q23.3	intergenic	rs6716455-G	0.13	7E-7		0.123	[NR] unit increase	Illumina [~ 300000]	N
1738	chr2	151126402	151126403	rs6716455	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	2q23.3	intergenic	rs6716455-G	0.13	9E-6		0.109	[NR] unit increase	Illumina [~ 300000]	N
1738	chr2	151135524	151135525	rs4233802	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2q23.3	NR	rs4233802-G	0.9853	5E-6		0.39	[0.22-0.56] unit increase	Illumina [up to 1980188] (imputed)	N
1738	chr2	151173720	151173721	rs148396385	29907492	Nakahara S	2018-06-12	Schizophr Res	Polygenic risk score, genome-wide association, and gene set analyses of cognitive domain deficits in schizophrenia.	Working memory	2 Alaskan native ancestry schizophrenia cases, 18 Asian ancestry schizophrenia cases, 20 African American schizophrenia cases, 1 Native Hawaiian ancestry schizophrenia cases, 86 European ancestry schizophrenia cases, 2 Alaskan native ancestry controls, 10 Asian ancestry controls, 17 African American controls, 1 Native Hawaiian ancestry controls, 106 European ancestry controls	NA	2q23.3	intergenic	rs148396385-G		3E-7		1.0	[NR] unit decrease	Illumina [NR] (imputed)	N
1738	chr2	151178894	151178895	rs1372436	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2q23.3	NR	rs1372436-T	0.9889	5E-6		0.3939	[0.22-0.56] unit increase	Illumina [up to 1980188] (imputed)	N
1738	chr2	151218041	151218042	rs148606324	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	2q23.3	NR	rs148606324-C		8E-7		0.64	[0.39-0.89] SD units decrease	NR [10700000] (imputed)	N
1738	chr2	151225058	151225059	rs6432736	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q23.3		rs6432736-T	0.29	1E-13		7.45	z score increase	Affymetrix [9061022] (imputed)	N
1738	chr2	151225058	151225059	rs6432736	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q23.3	NR	rs6432736-T	0.2741	2E-8				NR [9056863] (imputed)	N
1738	chr2	151250457	151250458	rs11684751	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2q23.3		rs11684751-?	NR	4E-6	(ser_lg_lmp)	1.74		Illumina [11595112] (imputed)	N
1738	chr2	151255466	151255467	rs71413689	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	2q23.3	intergenic	rs71413689-A	0.0248011	1E-6		2.25717	[1.62157-3.14189]	NR [7263501] (imputed)	N
1739	chr2	151263610	151263611	rs12474944	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	2q23.3	NR	rs12474944-G		7E-7				NR [525577]	N
1739	chr2	151323626	151323627	rs816888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q23.3	RND3	rs816888-T	0.479641	1E-10		0.0149941845	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1739	chr2	151323626	151323627	rs816888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q23.3	RND3	rs816888-T	0.479619	8E-12		0.015962606	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1739	chr2	151323626	151323627	rs816888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q23.3	RND3	rs816888-T	0.479557	1E-14		0.017874682	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1739	chr2	151323626	151323627	rs816888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q23.3	RND3	rs816888-T	0.479553	1E-12		0.016410839	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1739	chr2	151328992	151328993	rs707123	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q23.3	RBM43	rs707123-?	NR	8E-6	(glutamine)	0.16342953	[0.092-0.235] unit increase	Affymetrix [at least 2500000] (imputed)	N
1739	chr2	151348708	151348709	rs13413624	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RND3	rs13413624-?	NR	3E-11	(female)	1.30939	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1739	chr2	151354604	151354608	rs544436097	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	2q23.3	RND3	rs544436097-?	NR	4E-8		2.905	[1.87-3.94] unit decrease	Illumina [30743395] (imputed)	N
1740	chr2	151409166	151409167	rs55895454	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-ankle pulse wave velocity)	6,734 European ancestry individuals	NA	2q23.3	AC104777.2, RND3	rs55895454-T	0.01	1E-7		0.065	[0.041-0.089] unit increase	Affymetrix [11342744] (imputed)	N
1740	chr2	151451054	151451055	rs142400617	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.3	NR	rs142400617-A	0.01394	6E-10	(HSD17B4)	1.524	NR unit increase	Illumina [1671387] (imputed)	N
1740	chr2	151495630	151495631	rs4664698	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q23.3	NR	rs4664698-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1740	chr2	151495630	151495631	rs4664698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q23.3		rs4664698-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1740	chr2	151501544	151501545	rs12614085	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q23.3	RND3, RBM43	rs12614085-C		4E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix [13304133] (imputed)	N
1741	chr2	151635831	151635832	rs6757804	23472165	Albertsen HM	2013-03-05	PLoS One	Genome-wide association study link novel loci to endometriosis.	Endometriosis	1,514 European ancestry cases, 12,660 European ancestry controls	505 European ancestry cases, 1,811 European ancestry controls	2q23.3	RBM43, RND3	rs6757804-G	0.401	6E-8		1.2	[1.13-1.29]	Illumina [580699]	N
1741	chr2	151637935	151637936	rs7560163	22238593	Palmer ND	2012-01-04	PLoS One	A genome-wide association search for type 2 diabetes genes in African Americans.	Type 2 diabetes	965 African American cases, 1,029 African American controls	2,167 African American cases, 2,288 African American controls	2q23.3	RBM43, RND3	rs7560163-C	0.86	7E-9		1.33	[1.19-1.49]	Affymetrix [832357]	N
1741	chr2	151644202	151644203	rs962052	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q23.3	LOC101929282	rs962052-C	NR	8E-9		1.0628	NR	Affymetrix, Illumina [8278136] (imputed)	N
1742	chr2	151655512	151655513	rs7580162	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2q23.3	NR	rs7580162-G	0.245	9E-7		0.20387	[0.12-0.28] unit decrease	Illumina [~ 6600000] (imputed)	N
1742	chr2	151725791	151725792	rs10195263	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2q23.3	LOC344332	rs10195263-G		3E-8	(EA)			Illumina [NR]	N
1742	chr2	151739274	151739275	rs72860188	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q23.3	NR	rs72860188-A	0.184	4E-8				NR [9056863] (imputed)	N
1742	chr2	151754977	151754978	rs12996110	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q23.3		rs12996110-T	0.455502593	8E-6		0.011824953	[0.0066-0.017] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1742	chr2	151760451	151760452	rs13032164	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		2q23.3	NR	rs13032164-C	0.836	6E-6		1.42	[1.22-1.65]	Illumina [~ 8000000] (imputed)	N
1742	chr2	151763793	151763794	rs138656841	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2q23.3	NR	rs138656841-A	0.013	6E-6		4.31	[2.29-8.12]	Illumina [7959153] (imputed)	N
1742	chr2	151773678	151773679	rs917238	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	2q23.3	LOC101929282, RBM43	rs917238-G	NR	7E-6		1.45	[1.23-1.71]	Illumina [5698748] (imputed)	N
1743	chr2	151785741	151785742	rs12465911	29551738	Dong J	2018-03-15	Clin Gastroenterol Hepatol	Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.	Esophageal adenocarcinoma x gastroesophageal reflux disease interaction	2,284 European ancestry cases, 2,182 European ancestry controls	NA	2q23.3	RND3, RBM43	rs12465911-A	0.26	2E-7		2.03		Illumina [993501]	N
1743	chr2	151836382	151836383	rs6713372	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	2q23.3	NR	rs6713372-A	0.93	9E-6	(AA)	6.44	[3.7-9.18] bpm decrease	Illumina [at least 1100000] (imputed)	N
1744	chr2	151957270	151957270	rs142864856	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	2q23.3	RND3, RBM43	rs142864856-TACAC	NR	4E-8	(Glutamine)	0.493745	[0.32-0.67] unit decrease	Illumina [up to 9281895] (imputed)	N
1744	chr2	152024888	152024889	rs289848	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q23.3		rs289848-T	0.508	2E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1744	chr2	152041701	152041702	rs6705511	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q23.3	Intergenic	rs6705511-C	0.5034	3E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1744	chr2	152041701	152041702	rs6705511	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q23.3	Intergenic	rs6705511-C	0.5034	4E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1744	chr2	152043160	152043161	rs34276187	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q23.3	Intergenic	rs34276187-T	0.496	2E-8	(MTAG)	0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1745	chr2	152061882	152061883	rs289864	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	2q23.3	NR	rs289864-?		6E-6				Illumina [892589]	N
1745	chr2	152062944	152062945	rs62167560	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	2q23.3	NR	rs62167560-C	0.0207101	6E-6				Illumina [5378266] (imputed)	N
1745	chr2	152065856	152065857	rs289872	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	2q23.3	intergenic	rs289872-A	0.0784316346217019	6E-6		0.48314694	[0.27-0.69] unit decrease	Illumina [247039]	N
1745	chr2	152137180	152137181	rs289828	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q23.3	TNFAIP6	rs289828-T	0.622	6E-118	(Tumor necrosis factor-inducible gene 6 protein, TNFAIP6.5036.50.1)	0.55	[0.51-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
1745	chr2	152137180	152137181	rs289828	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q23.3	RBM43, NMI	rs289828-C	0.4280684	2E-21	(Tumor necrosis factor-inducible gene 6 protein)	0.3948	[0.32-0.47] unit increase	Affymetrix [509946]	N
1745	chr2	152146671	152146672	rs2278089	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFAIP6	5,363 Icelandic ancestry individuals	NA	2q23.3		rs2278089-G	0.4406	1E-228		0.549147	[0.52-0.58] unit increase	Illumina [7506463] (imputed)	N
1745	chr2	152146671	152146672	rs2278089	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q23.3	TNFAIP6	rs2278089-T	0.5559375	7E-132	(TNFAIP6, 5036_50_1)	0.5690057	[0.53-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
1745	chr2	152167829	152167830	rs13020443	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q23.3	NR	rs13020443-C	0.4983	3E-11		0.0305	[0.021-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1746	chr2	152198597	152198598	rs3845843	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q23.3	NR	rs3845843-C	0.4918	2E-12		0.0264	[0.019-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1746	chr2	152201468	152201469	rs6715902	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	2q23.3	NR	rs6715902-?	NR	3E-9	(TSG-6)	0.18	[0.12-0.24] unit increase	Illumina [4020654] (imputed)	N
1746	chr2	152208174	152208192	rs201323554	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q23.3	NR	rs201323554-G	0.138	2E-25	(Tumor necrosis factor-inducible gene 6 protein, TNFAIP6.5036.50.1)	0.37	[0.29-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
1746	chr2	152218230	152218231	rs3771892	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFAIP6	5,363 Icelandic ancestry individuals	NA	2q23.3		rs3771892-A	0.1117	6E-27		0.310045	[0.25-0.37] unit decrease	Illumina [7506463] (imputed)	N
1746	chr2	152225087	152225088	rs10432476	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q23.3	RIF1	rs10432476-?	NR	6E-6	(SM 16:0)	0.16609773	[0.094-0.238] unit increase	Affymetrix [at least 2500000] (imputed)	N
1746	chr2	152225876	152225877	rs34954281	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	2q23.3	NR	rs34954281-?	NR	9E-7		1.4838997	[1.27-1.74]	Affymetrix, Illumina [6717712] (imputed)	N
1746	chr2	152226569	152226570	rs1046668	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q23.3	TNFAIP6, MIR4773-2, RN7SL124P	rs1046668-G	0.1420683	2E-11	(EA, Tumor necrosis factor-inducible gene 6 protein)	0.402	[0.29-0.52] unit decrease	Affymetrix [509946]	N
1746	chr2	152253917	152253918	rs10197940	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	2q23.3	TNFAIP6, RIF1	rs10197940-T	0.52	5E-6		1.12	[1.06-1.18]	Illumina [596032]	N
1746	chr2	152280245	152280246	rs4491723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2q23.3		rs4491723-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1747	chr2	152346493	152346494	rs13031275	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q23.3	intergenic	rs13031275-C	NR	5E-6	(EA)	1.032	unit increase	Illumina [at least 5086170] (imputed)	N
1747	chr2	152351961	152351961	rs111740664	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q23.3	RIF1, NEB	rs111740664-GATGCGTGCTA	0.624878	2E-13		0.016816074	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1747	chr2	152356360	152356361	rs9287979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q23.3	NR	rs9287979-G	0.625967	5E-22				Affymetrix, Illumina [24246363] (imputed)	N
1747	chr2	152356360	152356361	rs9287979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q23.3	NR	rs9287979-G	0.625795	3E-22		0.01816	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1747	chr2	152356360	152356361	rs9287979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q23.3	NR	rs9287979-G	0.625941	6E-17				Affymetrix, Illumina [20825802] (imputed)	N
1747	chr2	152356360	152356361	rs9287979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q23.3	NR	rs9287979-G	0.626229	4E-17		0.016761	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1747	chr2	152356937	152356937	rs140073759	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q23.3		rs140073759-T	0.378	3E-11		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
1747	chr2	152365774	152365775	rs10432479	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q23.3	NEB	rs10432479-T	0.3714	9E-13		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1747	chr2	152366573	152366574	rs138684936	33674626	Yoon KJ	2021-03-05	Sci Rep	Variants in NEB and RIF1 genes on chr2q23 are associated with skeletal muscle index in Koreans: genome-wide association study.	Skeletal muscle index	2,046 Korean ancestry individuals	NA	2q23.3	NEB	rs138684936-A	NR	9E-9		0.2167	[0.14-0.29] unit increase	Illumina [6391983] (imputed)	N
1747	chr2	152371732	152371733	rs10182296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q23.3		rs10182296-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1747	chr2	152382453	152382454	rs6721666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q23.3		rs6721666-G	NR	3E-15		0.0132	[0.0099-0.0165] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1747	chr2	152387552	152387553	rs4664475	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q23.3	NEB	rs4664475-T	0.378	6E-15		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1747	chr2	152388227	152388228	rs60806638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q23.3	NEB	rs60806638-C	0.625745	1E-18		0.020399502	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1747	chr2	152405812	152405813	rs2288202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q23.3		rs2288202-C	NR	2E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1747	chr2	152405812	152405813	rs2288202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q23.3		rs2288202-C	NR	2E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1747	chr2	152414203	152414204	rs9750717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q23.3	NR	rs9750717-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1747	chr2	152423458	152423459	rs7557092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q23.3		rs7557092-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1748	chr2	152481711	152481712	rs10174077	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	2q23.3	NEB	rs10174077-T	0.476668785	1E-6		1.0992897	[1.057900617-1.142297942]	Illumina [10439017] (imputed)	N
1748	chr2	152481976	152481977	rs10186482	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q23.3	NEB	rs10186482-A	0.376	1E-7		0.0016	[0.001-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1748	chr2	152481976	152481977	rs10186482	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q23.3	NEB	rs10186482-A	0.3731	3E-6	(EA)	0.0017	[0.00092-0.00248] unit decrease	Affymetrix [NR] (imputed)	N
1748	chr2	152500448	152500449	rs13013209	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	2q23.3	NEB	rs13013209-?	NR	6E-13		0.03892	[0.028-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
1748	chr2	152526674	152526675	rs59444636	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q23.3	NEB	rs59444636-A	NR	5E-6		0.78478116	[0.45-1.12] unit decrease	Illumina [> 6200000] (imputed)	N
1748	chr2	152527607	152527608	rs34577613	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	2q23.3	NEB	rs34577613-C	0.8999172	8E-6		0.259143	[0.15-0.37] unit decrease	Illumina [6952813] (imputed)	N
1748	chr2	152534215	152534216	rs202124287	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	2q23.3	NEB	rs202124287-T	0.0	4E-6		4.8		Affymetrix [at least 751455]	N
1749	chr2	152597659	152597660	rs12464559	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	2q23.3	NEB, ARL5A, CACNB4	rs12464559-?	0.041	4E-6	(post-treatment)			Illumina [3017604] (imputed)	N
1750	chr2	152778184	152778185	rs6721495	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q23.3		rs6721495-T	0.2715	3E-8	(conditional-joint)	0.0088	[0.0057-0.0119] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1750	chr2	152780166	152780167	rs6729612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q23.3		rs6729612-T	0.676	9E-10		0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1750	chr2	152780166	152780167	rs6729612	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q23.3	Intergenic	rs6729612-T	0.676	2E-9	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1750	chr2	152781063	152781063	rs150793926	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	2q23.3	CACNB4	rs150793926-G	0.069	4E-8		1.04	[1.07-28.52]	Affymetrix [up to 27494467] (imputed)	N
1751	chr2	152892239	152892240	rs9784082	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vemurafenib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	2q23.3		rs9784082-?	NR	3E-7				Illumina [1510701]	N
1751	chr2	152896298	152896299	rs4664521	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to vemurafenib	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	2q23.3		rs4664521-?	NR	5E-7				Illumina [1510701]	N
1751	chr2	152912244	152912245	rs201654520	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cardiovascular disease	15,009 European ancestry cases, 41,628 European ancestry controls	NA	2q23.3		rs201654520-C	0.0173952	4E-8		19.02		Affymetrix [11440238] (imputed)	N
1751	chr2	152947387	152947388	rs7605400	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q23.3	NA	rs7605400-G		9E-10		0.0113502	[0.0077-0.015] unit decrease	Illumina [13288253] (imputed)	N
1751	chr2	152957410	152957411	rs3820706	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	2q23.3	CACNB4	rs3820706-G	0.57	2E-9	(Recessive)	2.38	[1.44-3.93]	Illumina [555600]	N
1752	chr2	152978340	152978341	rs4664080	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q23.3	STAM2	rs4664080-A	0.3944	2E-13		0.1304	[0.096-0.165] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1752	chr2	152981334	152981335	rs16830728	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia)	303 Japanese ancestry cases, 880 Japanese ancestry controls	23 Japanese ancestry cases	2q23.3	STAM2	rs16830728-T	0.59	3E-8	(Recessive)	3.61	[2.17-5.98]	Illumina [555600]	N
1752	chr2	153000336	153000337	rs12617139	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q23.3	NR	rs12617139-A	0.501	5E-8		0.00591809	[0.0038-0.008] unit decrease	NR [9732723] (imputed)	N
1752	chr2	153003103	153003104	rs3768649	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Metabolic syndrome	up to 2,857 Korean ancestry male cases and male controls	NA	2q23.3	STAM2	rs3768649-?	0.77	8E-6		1.39	[1.20-1.61]	Affymetrix [NR] (imputed)	N
1752	chr2	153042578	153042579	rs145421197	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Epiphora (PheCode 375.2)	774 European ancestry cases, 455,574 European ancestry controls	NA	2q23.3		rs145421197-G	0.001025	3E-9		7.67	[5.13-10.21] unit increase	NR [11842647] (imputed)	N
1752	chr2	153082331	153082332	rs77927779	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q23.3	NR	rs77927779-?	NR	2E-6		4.712	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1753	chr2	153154360	153154361	rs138726049	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.3	NR	rs138726049-A	0.01045	2E-13	(HSPA6)	0.04098	NR unit increase	Illumina [1671387] (imputed)	N
1753	chr2	153203617	153203617	rs397941066	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.3	NR	rs397941066-T	0.02439	1E-8	(COQ9)	0.01421	NR unit increase	Illumina [1671387] (imputed)	N
1753	chr2	153215700	153215701	rs72861983	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	2q23.3		rs72861983-T	NR	7E-7		2.34		Illumina [7574753] (imputed)	N
1754	chr2	153247765	153247766	rs2345872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q23.3	NR	rs2345872-C	0.171345	1E-12				Affymetrix, Illumina [23472807] (imputed)	N
1754	chr2	153256711	153256712	rs35083325	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	2q23.3	FMNL2	rs35083325-?	NR	3E-6		0.198	[0.12-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1754	chr2	153257972	153257973	rs16831065	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q23.3		rs16831065-G	0.14	5E-10		6.23	z score increase	Affymetrix [9061022] (imputed)	N
1754	chr2	153257972	153257973	rs16831065	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q23.3	NR	rs16831065-G	0.1397	2E-8				NR [9056863] (imputed)	N
1754	chr2	153282225	153282226	rs7586834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q23.3	NR	rs7586834-T	0.200583	2E-16				Affymetrix, Illumina [24649327] (imputed)	N
1754	chr2	153282374	153282375	rs7600624	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q23.3	FMNL2	rs7600624-G	0.154236	2E-12		0.02167119	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chr2	153282374	153282375	rs7600624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q23.3	NR	rs7600624-G	0.155382	3E-17		0.021508	[0.017-0.027] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1754	chr2	153282374	153282375	rs7600624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q23.3	NR	rs7600624-G	0.154806	1E-13		0.019416	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1754	chr2	153286121	153286121	rs561935387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q23.3		rs561935387-CT	NR	1E-9		0.0207	[0.014-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1754	chr2	153286121	153286121	rs561935387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q23.3	FMNL2	rs561935387-CT	0.147806	3E-10		0.01991027	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1754	chr2	153286714	153286715	rs13388095	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	2q23.3	NR	rs13388095-G	0.07	6E-6		1.42	[NR]	Illumina [747089]	N
1754	chr2	153288971	153288972	rs10179385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q23.3		rs10179385-C	NR	1E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1754	chr2	153294922	153294923	rs34968716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q23.3		rs34968716-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1754	chr2	153331545	153331546	rs12614608	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q23.3	FMNL2	rs12614608-G	0.72675	3E-13		0.0151194	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
1754	chr2	153331545	153331546	rs12614608	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q23.3		rs12614608-?	NR	3E-18		0.019116	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1754	chr2	153339822	153339823	rs2068886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q23.3		rs2068886-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1755	chr2	153357540	153357541	rs6434068	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	2q23.3	FMNL2	rs6434068-C	NR	3E-8		1.10296	[1.07-1.14]	Illumina [NR] (imputed)	N
1755	chr2	153357540	153357541	rs6434068	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	2q23.3	FMNL2	rs6434068-C	NR	4E-9		1.10738	[1.07-1.14]	Illumina [NR] (imputed)	N
1755	chr2	153357540	153357541	rs6434068	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		2q23.3	FMNL2	rs6434068-G	0.428	7E-6		0.013	[0.0071-0.0189] dioptres increase	NR [5900115] (imputed)	N
1755	chr2	153357540	153357541	rs6434068	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	69,140 European ancestry cases, 17,195 European ancestry controls	NA	2q23.3	FMNL2	rs6434068-C	NR	6E-7		1.063	[1.039-1.088]	NR [5921785] (imputed)	N
1755	chr2	153357540	153357541	rs6434068	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2q23.3	FMNL2	rs6434068-C	NR	2E-11		1.098901	[1.06-1.12]	Affymetrix [at least 665500] (imputed)	N
1755	chr2	153361374	153361375	rs55692468	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2q23.3	FMNL2	rs55692468-?	NR	5E-13		0.09	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	2q23.3	FMNL2	rs1579050-A	NR	3E-37		0.0917	unit decrease	Illumina [15409056] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2q23.3	NR	rs1579050-G		2E-23		0.15	[0.13-0.17] unit increase	NR [NR]	N
1755	chr2	153364526	153364527	rs1579050	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2q23.3	FMNL2	rs1579050-A	0.42	4E-9		0.00539	[0.0036-0.0072] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2q23.3	FMNL2	rs1579050-A	0.43	4E-26				Affymetrix, Illumina [8002429] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		2q23.3	FMNL2	rs1579050-A	0.425	3E-7		0.015	[0.0091-0.0209] dioptres increase	NR [5901671] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q23.3	FMNL2	rs1579050-?	NR	1E-25		0.1342	[0.11-0.16] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	2q23.3	FMNL2	rs1579050-?	NR	3E-7		1.0838288	[1.05-1.12]	Affymetrix [up to 40000000] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q23.3	FMNL2	rs1579050-A	0.424	7E-25		0.132	[0.11-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1755	chr2	153364526	153364527	rs1579050	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q23.3	FMNL2	rs1579050-A	0.4262	1E-22		0.133	[0.11-0.16] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1755	chr2	153366826	153366827	rs12471183	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q23.3	FMNL2	rs12471183-T	0.4523	5E-19		0.12	[0.092-0.148] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1755	chr2	153401505	153401506	rs55803108	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q23.3		rs55803108-A	0.17	3E-13		7.28	z score increase	Affymetrix [9061022] (imputed)	N
1755	chr2	153401505	153401506	rs55803108	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q23.3		rs55803108-A	0.17	3E-11		6.64	z score increase	Affymetrix [9061022] (imputed)	N
1755	chr2	153401505	153401506	rs55803108	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q23.3	NR	rs55803108-A	0.1745	8E-12				NR [9056863] (imputed)	N
1755	chr2	153436569	153436570	rs11675841	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q23.3	NR	rs11675841-C	0.607345676902537	6E-6	(IGP71)	0.1448	[0.082-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
1755	chr2	153436569	153436570	rs11675841	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q23.3	NR	rs11675841-C	0.607345676902537	6E-6	(IGP66)	0.1448	[0.082-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
1755	chr2	153436569	153436570	rs11675841	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q23.3	NR	rs11675841-C	0.607345676902537	5E-6	(IGP70)	0.1458	[0.083-0.208] unit decrease	Illumina [~ 2500000] (imputed)	N
1755	chr2	153436569	153436570	rs11675841	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q23.3	NR	rs11675841-C	0.607171814781834	8E-6	(IGP68)	0.1429	[0.08-0.206] unit decrease	Illumina [~ 2500000] (imputed)	N
1756	chr2	153503259	153503260	rs55785027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q23.3		rs55785027-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1756	chr2	153542584	153542585	rs4664602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q23.3		rs4664602-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1756	chr2	153554061	153554061	rs11392999	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q23.3		rs11392999-?	NR	2E-12		0.0178246	[0.013-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1756	chr2	153559643	153559644	rs13012521	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	2q23.3	PRPF40A	rs13012521-T	0.09	8E-6		2.99	[2.50-3.48]	Illumina [7033776] (imputed)	N
1756	chr2	153573407	153573408	rs4664604	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q23.3	PRPF40A	rs4664604-C	0.170867	9E-12		0.0167778	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
1756	chr2	153573527	153573528	rs4664605	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	2q23.3		rs4664605-C	NR	6E-7		0.0041772	[0.0025-0.0058] years increase	NR [7400000] (imputed)	N
1756	chr2	153573527	153573528	rs4664605	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2q23.3		rs4664605-C	NR	1E-10		0.021809028	[0.015-0.028] years increase	NR [7400000] (imputed)	N
1757	chr2	153618772	153618773	rs3175	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	2q23.3	PRPF40A	rs3175-G	0.3487	5E-9		0.1287	[0.086-0.172] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1757	chr2	153649489	153649490	rs11692707	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 3 or 4)	255 European ancestry cases, 5,199 European ancestry controls	NA	2q23.3		rs11692707-A	0.81	2E-6		2.05		Illumina [10258281] (imputed)	N
1757	chr2	153654719	153654720	rs12478462	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	2q23.3	ARL6IP6	rs12478462-G	0.22	3E-7	(EA)	1.14	[1.08-1.19]	Illumina [11381182] (imputed)	N
1757	chr2	153702723	153702724	rs57902545	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q23.3	ARL6IP6, PRPF40A	rs57902545-?		6E-11				Affymetrix, Illumina [NR] (imputed)	N
1757	chr2	153731643	153731644	rs10931352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q23.3	PRPF40A	rs10931352-?	NR	5E-6	(histidine)	0.2884714	[0.16-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1758	chr2	153749367	153749368	rs78683678	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2q23.3	intergenic	rs78683678-T	0.09	5E-6		0.168	[0.095-0.241] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
1758	chr2	153774952	153774953	rs11690661	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q23.3	NR	rs11690661-?	NR	5E-9				Affymetrix [NR]	N
1758	chr2	153785814	153785815	rs377214741	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Mean arterial pressure	137 Chinese ancestry twins	NA	2q23.3		rs377214741-?	NR	4E-6				Illumina [7401356] (imputed)	N
1758	chr2	153798064	153798065	rs6734703	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Diastolic blood pressure	137 Chinese ancestry twins	NA	2q23.3		rs6734703-?	NR	4E-6				Illumina [7401356] (imputed)	N
1758	chr2	153816220	153816221	rs77667361	26284813	Hayes MG	2015-08-18	Nat Commun	Genome-wide association of polycystic ovary syndrome implicates alterations in gonadotropin secretion in European ancestry populations.	Follicle stimulating hormone levels in polycystic ovary syndrome	647 European ancestry cases	606 European ancestry cases	2q23.3	intergenic	rs77667361-T	0.04	5E-6		0.1	[-0.15600-0.23600] log10(mIU/mL) decrease	Illumina [at least 624044] (imputed)	N
1758	chr2	153823076	153823077	rs115838820	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.3	NR	rs115838820-T	0.01394	9E-9	(NUDT5)	0.139	NR unit increase	Illumina [1671387] (imputed)	N
1758	chr2	153831481	153831482	rs1991625	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q23.3	ARL6IP6, RPRM	rs1991625-A	0.6778767889999999	4E-6		1.0594825	[1.03-1.09]	Illumina [10439017] (imputed)	N
1758	chr2	153877544	153877545	rs111933288	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q23.3	ATP5F1P4	rs111933288-T	0.935	2E-6		0.0649	[0.038-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1759	chr2	153911470	153911471	rs10931443	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-145 sp002320005 abundance in stool	5,959 Finnish ancestry individuals	NA	2q23.3		rs10931443-A	0.4361	4E-10		0.0411734	[0.028-0.054] unit increase	Illumina [7980478] (imputed)	N
1759	chr2	153931176	153931177	rs1367374	27207650	Schmit SL	2016-04-18	Carcinogenesis	Genome-wide association study of colorectal cancer in Hispanics.	Colorectal cancer	1,611 Hispanic cases, 4,330 Hispanic controls	NA	2q23.3	NR	rs1367374-C	0.13	4E-7		1.37	[1.21-1.55]	Illumina [9875636] (imputed)	N
1759	chr2	153943225	153943226	rs186826000	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q23.3	NR	rs186826000-?	NR	8E-6	(Native Hawaiian)	1.2102	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1759	chr2	153943225	153943226	rs186826000	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q23.3	NR	rs186826000-?	NR	3E-7	(Native Hawaiian)	1.2654	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1759	chr2	153970625	153970626	rs116832035	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q23.3	NR	rs116832035-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1759	chr2	153982271	153982272	rs1107718	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to paclitaxel	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	2q23.3		rs1107718-?	NR	1E-8				Illumina [1510701]	N
1759	chr2	154003157	154003158	rs7562599	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2q23.3	NR	rs7562599-?	NR	7E-6		0.1555	[0.087-0.224] unit increase	Illumina [at least 560000] (imputed)	N
1759	chr2	154006912	154006913	rs147158068	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2q23.3	NR	rs147158068-A	0.9727	1E-7		0.056677703	[0.036-0.078] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1760	chr2	154022855	154022856	rs10171206	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q23.3	RPRM	rs10171206-A	0.32358	4E-9		0.0115378	[0.0077-0.0154] unit decrease	NR [13737936] (imputed)	N
1760	chr2	154042321	154042322	rs10202249	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	2q23.3	intergenic	rs10202249-?	NR	4E-6		1.4175328	[1.22-1.64]	Illumina [at least 4756722] (imputed)	N
1761	chr2	154165251	154165252	rs6727599	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	2q23.3	ARL6IP6, RPRM	rs6727599-T	0.2099	5E-6		0.2572	[0.15-0.37] unit decrease	NR [NR] (imputed)	N
1761	chr2	154175434	154175435	rs59922837	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	2q23.3	NR	rs59922837-?	NR	4E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
1761	chr2	154178632	154178633	rs72873391	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q23.3	RPRM	rs72873391-A	0.07305	9E-7	(EA)			Illumina [4404269] (imputed)	N
1761	chr2	154240308	154240309	rs10196515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q23.3	Intergenic	rs10196515-A	0.8477	4E-9	(MTAG)	0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1762	chr2	154366273	154366274	rs114985352	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2q23.3	NR	rs114985352-T	0.0153	6E-6		0.5881	[0.34-0.84] unit increase	Illumina [7305641] (imputed)	N
1763	chr2	154456163	154456164	rs7560042	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	2q23.3	intergenic	rs7560042-A	0.237	1E-6		0.196	[NR] unit increase	Illumina [625127]	N
1763	chr2	154501788	154501789	rs716275	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q23.3		rs716275-A	NR	2E-6		4.7596693	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1763	chr2	154509238	154509239	rs1546676	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2q23.3	intergenic	rs1546676-?		8E-6	(M)	23.62	[12.86-34.38] unit increase	Illumina [693128]	N
1763	chr2	154519089	154519090	rs190037128	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	2q23.3	NR	rs190037128-G		3E-7		0.5785	[0.35-0.81] SD units increase	NR [10700000] (imputed)	N
1763	chr2	154521745	154521746	rs190845920	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q23.3	Intergenic	rs190845920-C	1.0	3E-6	(AA)	4.466	NR unit increase	Illumina [NR] (imputed)	N
1764	chr2	154557243	154557244	rs13385260	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q23.3	NR	rs13385260-T	0.01045	1E-18	(ALDH16A1)	0.0507	NR unit increase	Illumina [1671387] (imputed)	N
1764	chr2	154568756	154568757	rs10931753	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	2q23.3	RPRM, GALNT13	rs10931753-?	NR	5E-6		0.129	[0.074-0.184] unit increase	Illumina [> 2500000] (imputed)	N
1764	chr2	154602134	154602135	rs2176732	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q23.3	Intergenic	rs2176732-A	0.9174	6E-9	(MTAG)	0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1765	chr2	154688727	154688728	rs1406084	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2q23.3	Intergenic	rs1406084-?	NR	8E-6		1.432	[NR]	Affymetrix [492217] (imputed)	N
1765	chr2	154731286	154731287	rs6751439	25979521	de Jong K	2015-06-05	J Allergy Clin Immunol	Genome-wide interaction study of gene-by-occupational exposure and effects on FEV1 levels.	Forced expiratory volume in 1 second (occupational environmental exposures interaction)	12,400 individuals	1,436 individuals	2q23.3	GALNT13	rs6751439-A	0.13	7E-7	Mineral dust	170.8	[NR] unit decrease	Illumina [up to 221663]	N
1766	chr2	154797529	154797530	rs776877	31591465	Bigdeli TB	2019-10-07	Mol Psychiatry	Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry.	Schizophrenia or schizoaffective disorder	6,152 African ancestry cases, 1,234 Latino cases, 34,241 European and East Asian ancestry cases, 3,918 African ancestry controls, 3,090 Latino controls, 45,604 European and East Asian ancestry controls, 1,235 European ancestry trios	NA	2q23.3	GALNT13	rs776877-?	NR	3E-9	(Latino)	1.39	[1.28-1.50]	Illumina [NR] (imputed)	N
1766	chr2	154800000	154800001	rs1850751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q23.3	Intergenic	rs1850751-T	0.7284	7E-9	(MTAG)	0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1766	chr2	154800000	154800001	rs1850751	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q23.3	Intergenic	rs1850751-C	0.2716	1E-8		0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1766	chr2	154856692	154856693	rs544533597	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	NR	rs544533597-?	NR	2E-6		0.0079451	[0.0047-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1766	chr2	154881276	154881277	rs150790890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.1	NR	rs150790890-A	0.01045	9E-9	(CAPNS1)	0.02592	NR unit increase	Illumina [1671387] (imputed)	N
1766	chr2	154881276	154881277	rs150790890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.1	NR	rs150790890-A	0.01045	6E-24	(TAGLN)	0.6591	NR unit increase	Illumina [1671387] (imputed)	N
1766	chr2	154881276	154881277	rs150790890	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.1	NR	rs150790890-A	0.01045	4E-9	(FHL1)	0.00719	NR unit increase	Illumina [1671387] (imputed)	N
1766	chr2	154916929	154916930	rs12693907	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.1	Intergenic	rs12693907-G	0.3902	8E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1767	chr2	155002846	155002847	rs16836124	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.1	GALNT13	rs16836124-G	0.054	6E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1767	chr2	155027446	155027447	rs12620249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.1		rs12620249-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1767	chr2	155029192	155029193	rs80190198	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	2q24.1	GALNT13	rs80190198-C	0.02	3E-6		0.019	[0.011-0.027] unit increase	Illumina [7411206] (imputed)	N
1767	chr2	155033733	155033734	rs145299843	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	2q24.1	NR	rs145299843-C		3E-6		0.5472	[0.31-0.78] SD units increase	NR [10700000] (imputed)	N
1768	chr2	155070566	155070567	rs958672	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	2q24.1	GALNT13	rs958672-?	NR	2E-6	(age at natural menopause)			Affymetrix [70897]	N
1768	chr2	155125643	155125644	rs13423444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.1	NR	rs13423444-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1768	chr2	155158908	155158909	rs10490530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q24.1		rs10490530-G	NR	1E-8		0.0184	[0.012-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1768	chr2	155171138	155171139	rs12693973	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	2q24.1	GALNT13	rs12693973-?	NR	2E-6		4.8	[NR] z score decrease	Affymetrix, Illumina [up to 583824] (imputed)	N
1768	chr2	155176955	155176956	rs143859190	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	2q24.1	GALNT13	rs143859190-T	0.99	4E-7	(BDRPRED, AA)	8.1	[5-11.2] unit increase	Illumina [NR] (imputed)	N
1769	chr2	155204132	155204133	rs17811332	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	2q24.1	GALNT13	rs17811332-G	0.961	4E-6		1.299	[0.75-1.85] unit decrease	Illumina [9520174] (imputed)	N
1769	chr2	155208172	155208173	rs148686217	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	2q24.1		rs148686217-T	0.18	6E-9				NR [NR] (imputed)	N
1769	chr2	155212215	155212216	rs10490528	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2q24.1		rs10490528-?	NR	7E-6		0.4700129	[0.27-0.67] unit decrease	Illumina [9901720] (imputed)	N
1769	chr2	155225181	155225182	rs17206992	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	2q24.1	GALNT13	rs17206992-G	0.057	6E-6	(EA)	2.32	[NR]	Illumina [6728637] (imputed)	N
1769	chr2	155226676	155226677	rs707040	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.1	intergenic	rs707040-?	0.38	6E-6	(Recessive)	1.17	[1.10-1.26]	Affymetrix [319222]	N
1769	chr2	155234317	155234318	rs12621256	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	2q24.1	GALNT13	rs12621256-G	0.066	4E-6		0.092	[0.053-0.131] unit increase	Illumina [747076]	N
1769	chr2	155239677	155239678	rs799791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.1	Intergenic	rs799791-C	0.3951	2E-9	(MTAG)	0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1769	chr2	155239677	155239678	rs799791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.1	Intergenic	rs799791-G	0.605	4E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1769	chr2	155262143	155262144	rs799758	29884306	Workalemahu T	2018-04-16	Placenta	Genetic variations and risk of placental abruption: A genome-wide association study and meta-analysis of genome-wide association studies.	Placental abruption	959 cases, 1553 controls	NA	2q24.1	GALNT13	rs799758-T		8E-6		1.47	[1.24-1.74]	Illumina [up to 4983952] (imputed)	N
1770	chr2	155335552	155335553	rs78841413	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	2q24.1	NR	rs78841413-?	NR	3E-8	(Erysipelothrix)	0.912101	[0.62-1.21] unit increase	Illumina [5293637] (imputed)	N
1770	chr2	155361661	155361662	rs148848877	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	2q24.1	NR	rs148848877-?	NR	2E-6				Illumina [NR] (imputed)	N
1770	chr2	155361951	155361952	rs13019774	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	2q24.1	NR	rs13019774-T	0.39	1E-6		1.12	[1.07-1.17]	Illumina [~ 1113287] (imputed)	N
1770	chr2	155363335	155363336	rs16837754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.1	Intergenic	rs16837754-A	0.8066	4E-14	(MTAG)	0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1770	chr2	155363335	155363336	rs16837754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.1	Intergenic	rs16837754-A	0.8066	5E-13		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1770	chr2	155363335	155363336	rs16837754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs16837754-A	0.8065	2E-11	(MTAG)	0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1770	chr2	155363335	155363336	rs16837754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.1	Intergenic	rs16837754-A	0.8065	3E-8		0.0159	[0.01-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1770	chr2	155370861	155370862	rs16837783	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.1	KCNJ3	rs16837783-?	NR	7E-6	(LPE 22:6)	0.2942311	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1770	chr2	155370861	155370862	rs16837783	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.1	KCNJ3	rs16837783-?	NR	3E-6	(LPC 18:0)	0.30634055	[0.18-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1770	chr2	155379551	155379552	rs76546671	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		LOC100144595	rs76546671-G	0.03	5E-6				Illumina [1679420] (imputed)	N
1770	chr2	155381330	155381331	rs1896831	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.1	KCNJ3	rs1896831-?	NR	2E-6	(LPE 18:1)	0.3931963	[0.23-0.55] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1770	chr2	155409846	155409847	rs148981288	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	2q24.1		rs148981288-A	0.0326	3E-6		2.851	[1.841-4.416]	Affymetrix [7975321] (imputed)	N
1770	chr2	155443385	155443386	rs10198948	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	RNA5SP107	rs10198948-T	NR	1E-9		0.027081385	[0.018-0.036] unit decrease	Affymetrix [NR]	N
1771	chr2	155451737	155451738	rs10178115	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q24.1	NR	rs10178115-T	0.5422	6E-10		0.013844021	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1771	chr2	155463708	155463709	rs10185725	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q24.1	RNA5SP107	rs10185725-?	NR	9E-9		5.756	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1771	chr2	155474354	155474355	rs13422673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs13422673-T	0.4659	6E-15		0.011	[0.0083-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1771	chr2	155480241	155480242	rs7584691	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs7584691-A	0.5293	3E-15	(conditional-joint)	0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1771	chr2	155488868	155488869	rs13421974	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q24.1		rs13421974-T	0.5224	2E-7		37.25048	z score increase	NR [6814003]	N
1771	chr2	155506733	155506734	rs11695105	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs11695105-T	0.509	2E-17	(MTAG)	0.0111	[0.0086-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr2	155507710	155507711	rs10165653	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q24.1	AC061961.2	rs10165653-G	0.4934	2E-10		0.012798085	[0.0088-0.0168] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1771	chr2	155527138	155527139	rs6760772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.1		rs6760772-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1771	chr2	155531203	155531204	rs4398228	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q24.1	ENSG00000235949	rs4398228-?	NR	3E-8		0.011238307	[0.0073-0.0152] unit increase	NR [7306098]	N
1771	chr2	155535966	155535967	rs62170775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs62170775-T	0.4414	3E-14	(MTAG)	0.0126	[0.0093-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr2	155535966	155535967	rs62170775	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.1	Intergenic	rs62170775-G	0.5586	3E-8		0.0126	[0.0081-0.0171] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1771	chr2	155539354	155539355	rs16837982	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q24.1	NR	rs16837982-?	NR	1E-6	(AA)	20.37	[18.43-22.31]	Illumina [905956]	N
1771	chr2	155547852	155547853	rs3106666	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.1	Intergenic	rs3106666-A	0.421	1E-8	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr2	155547852	155547853	rs3106666	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs3106666-A	NR	2E-9		5.967	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1771	chr2	155547852	155547853	rs3106666	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	ENSG00000235949	rs3106666-A	NR	1E-9		0.01795767	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1771	chr2	155566639	155566640	rs67490716	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma (TNM stage 1 or 2)	330 European ancestry cases, 5,199 European ancestry controls	NA	2q24.1		rs67490716-C	0.29	2E-6		1.49		Illumina [10258281] (imputed)	N
1772	chr2	155640625	155640626	rs6719455	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema in chronic obstructive pulmonary disease	514 Korean ancestry individuals	NA	2q24.1		rs6719455-?	NR	3E-7		0.57	[0.35-0.79] unit decrease	NR [599248] (imputed)	N
1772	chr2	155641768	155641769	rs56784511	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	2q24.1		rs56784511-?	NR	3E-7		0.71	[0.44-0.98] unit decrease	NR [599248] (imputed)	N
1772	chr2	155647665	155647666	rs2591158	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	2q24.1	KCNJ3, CBX3P6, RNA5SP107	rs2591158-?		4E-6		1.24239	[1.14-1.40]	Illumina [9389922] (imputed)	N
1772	chr2	155654756	155654757	rs2652446	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q24.1		rs2652446-C	0.479	4E-12		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1772	chr2	155654997	155654998	rs74796574	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	KCNJ3	rs74796574-T	NR	1E-8		5.726	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1772	chr2	155661431	155661432	rs1445653	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	KCNJ3	rs1445653-A	NR	4E-10		6.256	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1772	chr2	155661431	155661432	rs1445653	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	2q24.1	KCNJ3	rs1445653-G	0.61	9E-6		1.26		Illumina [8974355] (imputed)	N
1772	chr2	155664655	155664656	rs62170823	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	KCNJ3	rs62170823-A	NR	4E-12		6.922	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1772	chr2	155670202	155670203	rs2652452	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2q24.1	KCNJ3	rs2652452-A	0.45	3E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1772	chr2	155670202	155670203	rs2652452	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2q24.1	KCNJ3	rs2652452-A	0.45	2E-9		0.033	[0.022-0.044] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1772	chr2	155682555	155682556	rs1445649	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.1	NR	rs1445649-C	0.538	1E-20		0.0100502	[0.0079-0.0122] unit increase	NR [9732723] (imputed)	N
1772	chr2	155682555	155682556	rs1445649	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.1	NR	rs1445649-C	0.538	8E-16		0.020571643	[0.016-0.026] unit increase	NR [~ 10000000] (imputed)	N
1772	chr2	155682555	155682556	rs1445649	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q24.1	NR	rs1445649-C	0.539	2E-10		0.00932049	[0.0065-0.0122] unit decrease	NR [9732723] (imputed)	N
1772	chr2	155684337	155684338	rs2652460	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	2q24.1	KCNJ3	rs2652460-A	0.4678	4E-9		0.0133310845	[0.0089-0.0178] unit decrease	Affymetrix [11514463] (imputed)	N
1772	chr2	155687075	155687076	rs2591173	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	2q24.1		rs2591173-?	NR	1E-8				NR [7857346] (imputed)	N
1773	chr2	155713848	155713849	rs75561433	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	2q24.1	KCNJ3	rs75561433-G	NR	5E-7		0.201317	[0.12-0.28] unit increase	Illumina [at least 950000] (imputed)	N
1773	chr2	155730201	155730202	rs2591125	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	KCNJ3	rs2591125-A	NR	6E-9		5.823	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1773	chr2	155731955	155731956	rs2652430	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.1	NR	rs2652430-A	0.484095	9E-9		0.036098342	[0.024-0.048] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1773	chr2	155731955	155731956	rs2652430	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2q24.1	KCNJ3, LOC101929378	rs2652430-A		4E-10		0.978	[NR]	Affymetrix [up to 79000000] (imputed)	N
1773	chr2	155731955	155731956	rs2652430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.1	Intergenic	rs2652430-A	0.4619	7E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1773	chr2	155742893	155742894	rs2652434	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q24.1	KCNJ3	rs2652434-C	0.533	2E-8		0.0128	[0.0083-0.0173] unit increase	Illumina [~ 250000] (imputed)	N
1773	chr2	155742893	155742894	rs2652434	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q24.1	KCNJ3	rs2652434-T	0.4665	3E-8		0.011200736	[0.0073-0.0151] unit decrease	Affymetrix [11514654] (imputed)	N
1773	chr2	155742893	155742894	rs2652434	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q24.1	KCNJ3	rs2652434-T	0.4666	7E-9		0.0149776405	[0.0099-0.02] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1773	chr2	155777637	155777638	rs10804171	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q24.1		rs10804171-?	NR	4E-8				NR [7857346] (imputed)	N
1773	chr2	155777637	155777638	rs10804171	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	CBX3P6	rs10804171-?	NR	4E-8		0.0096283	[0.0062-0.0131] unit decrease	Affymetrix [805426] (imputed)	N
1773	chr2	155803516	155803517	rs79990809	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	NR	rs79990809-?	NR	1E-7		5.312	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1773	chr2	155812391	155812392	rs183369189	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q24.1	NR	rs183369189-?	NR	2E-7	(AA)	0.8502	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1774	chr2	155868666	155868667	rs6736848	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q24.1	NR	rs6736848-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1774	chr2	155875811	155875812	rs10191743	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	2q24.1	KCNJ3	rs10191743-T	NR	9E-6		0.178066	[0.1-0.256] unit increase	Illumina [at least 950000] (imputed)	N
1774	chr2	155923422	155923423	rs116267997	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	NR	rs116267997-?	NR	2E-6		0.0080595	[0.0047-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1774	chr2	155931226	155931227	rs6705939	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q24.1	NR	rs6705939-T	0.304017553846513	9E-11		0.006470327	[0.0045-0.0084] unit increase	NR [NR]	N
1774	chr2	155972117	155972118	rs13396259	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q24.1	NR	rs13396259-G	0.302220948325682	1E-10		0.00790654	[0.0055-0.0103] unit increase	NR [NR]	N
1774	chr2	155972117	155972118	rs13396259	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q24.1	NR	rs13396259-G	0.302220948325682	1E-10		0.010302779	[0.0072-0.0134] unit increase	NR [NR]	N
1774	chr2	155972117	155972118	rs13396259	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q24.1	NR	rs13396259-G	0.302220948325682	3E-10		0.008400897	[0.0058-0.011] unit increase	NR [NR]	N
1774	chr2	155972117	155972118	rs13396259	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q24.1	NR	rs13396259-G	0.302220948325682	1E-10		0.006579344	[0.0046-0.0086] unit increase	NR [NR]	N
1775	chr2	155986194	155986195	rs6744254	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.1	NR	rs6744254-C	0.484095	4E-8		0.03456295	[0.022-0.047] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1775	chr2	155986194	155986195	rs6744254	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q24.1		rs6744254-?	NR	1E-8				NR [7857346] (imputed)	N
1775	chr2	155986194	155986195	rs6744254	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	2q24.1	NR	rs6744254-?		5E-13		0.0159012	[0.012-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1775	chr2	156005990	156005991	rs6724928	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q24.1	KCNJ3	rs6724928-C	0.32	4E-8		0.011	[0.0051-0.0169] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1775	chr2	156013296	156013297	rs12993989	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	RNU6-1001P	rs12993989-T	NR	2E-9		0.017486835	[0.012-0.023] unit increase	Affymetrix [NR]	N
1775	chr2	156021861	156021862	rs7609050	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	RNU6-1001P	rs7609050-A	NR	1E-14		7.743	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1775	chr2	156023164	156023165	rs1994247	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2q24.1	KCNJ3	rs1994247-T	0.479456	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
1775	chr2	156051134	156051135	rs111899708	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs111899708-A	0.994	5E-6	(AA)	0.807	NR unit increase	Illumina [NR] (imputed)	N
1776	chr2	156151387	156151388	rs1948731	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	NR	rs1948731-?	NR	1E-6		0.0086966	[0.0052-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
1776	chr2	156216987	156216988	rs62176229	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	NR	rs62176229-?	NR	8E-8		5.375	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1777	chr2	156256700	156256701	rs4544377	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	2q24.1	KCNJ3	rs4544377-A	0.88	2E-6		1.832	[1.623-2.07]	Illumina [NR]	N
1777	chr2	156310468	156310469	rs1505729	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	NR	rs1505729-?	NR	1E-6		0.0087606	[0.0052-0.0123] unit decrease	Affymetrix [805426] (imputed)	N
1777	chr2	156341632	156341633	rs1566990	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	NR	rs1566990-?	NR	5E-7		5.032	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1778	chr2	156403867	156403868	rs16839220	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA		NR	rs16839220-G	0.8	5E-6		1.8867927	[1.61-2.16]	NR [up to 6398204] (imputed)	N
1778	chr2	156465746	156465747	rs80153284	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2q24.1	intergenic	rs80153284-A	0.0299	2E-8		0.2314	[0.15-0.31] unit increase	NR [9744772] (imputed)	N
1778	chr2	156467388	156467389	rs78496838	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.1	NR	rs78496838-A	0.01742	1E-8	(SDS)	0.06467	NR unit increase	Illumina [1671387] (imputed)	N
1779	chr2	156525079	156525080	rs17305247	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q24.1	LOC101929378	rs17305247-T	0.01948	9E-6	(African)			Illumina [4404269] (imputed)	N
1779	chr2	156535852	156535853	rs7594648	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	2q24.1	intergenic	rs7594648-?		6E-6	(PC3)	0.0443	[NR] unit increase	Illumina [4167292] (imputed)	N
1779	chr2	156570189	156570190	rs7579510	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2q24.1	NR	rs7579510-C	0.012	4E-6		0.6159	[0.36-0.88] unit increase	Illumina [7305641] (imputed)	N
1779	chr2	156579659	156579660	rs4664774	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q24.1	NR	rs4664774-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
1779	chr2	156585408	156585409	rs80001695	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs80001695-A	0.0128	1E-8	(MTAG)	0.0417	[0.027-0.056] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1779	chr2	156597055	156597056	rs72887143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q24.1		rs72887143-T	NR	3E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1779	chr2	156603534	156603535	rs6720515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs6720515-A	0.7763	8E-10		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1779	chr2	156604024	156604025	rs72887152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.1		rs72887152-?	NR	5E-18				NR [~ 8900000] (imputed)	N
1779	chr2	156607385	156607386	rs2139034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.1		rs2139034-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	2q24.1		rs142058842-G	NR	4E-16		0.00862765	[0.0065-0.0107] years increase	NR [7400000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	2q24.1		rs142058842-G	NR	4E-14		0.0112639	[0.0083-0.0142] years increase	NR [7400000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	2q24.1		rs142058842-G	NR	4E-7		0.00472546	[0.0029-0.0066] years decrease	NR [7400000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	2q24.1		rs142058842-G	NR	3E-14		0.00913585	[0.0068-0.0115] years decrease	NR [7400000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2q24.1		rs142058842-G	NR	9E-36		0.053932272	[0.045-0.062] years increase	NR [7400000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q24.1		rs142058842-?	NR	3E-38				NR [~ 8900000] (imputed)	N
1779	chr2	156621724	156621725	rs142058842	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	2q24.1	KCNJ3, NR4A2	rs142058842-?	NR	2E-8		0.04	[0.026-0.054] unit increase	Illumina [12039491]	N
1779	chr2	156629692	156629693	rs16839578	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.1	NR	rs16839578-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1779	chr2	156629692	156629693	rs16839578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.1		rs16839578-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1780	chr2	156639419	156639420	rs2350818	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs2350818-C	0.7756	7E-10	(MTAG)	0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1780	chr2	156658232	156658233	rs190142154	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q24.1	AC093375.1	rs190142154-T	0.0124	9E-6		0.1703	[0.095-0.245] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1780	chr2	156658232	156658233	rs190142154	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q24.1	AC093375.1	rs190142154-T	0.0124	9E-6		0.1703	[0.095-0.245] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1780	chr2	156693032	156693033	rs10190879	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	2q24.1	NR	rs10190879-C	0.702	2E-8		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1780	chr2	156734278	156734279	rs576611613	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	2q24.1	LOC105373703	rs576611613-CA	0.0206	7E-8		7.4811	[4.77-10.19] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1780	chr2	156734278	156734279	rs576611613	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	2q24.1	LOC105373703	rs576611613-CA	0.0206	3E-7		8.6611	[5.35-11.98] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1780	chr2	156751920	156751921	rs1520339	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	2q24.1	intergenic	rs1520339-C	0.69	6E-7	(MDC)	1.724138	[1.39-2.13]	Illumina [539846]	N
1780	chr2	156752458	156752459	rs17236969	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q24.1	NR4A2	rs17236969-T	0.14	3E-9		0.05	[0.034-0.066] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1781	chr2	156835058	156835059	rs1554798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs1554798-A	0.4667	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1781	chr2	156835058	156835059	rs1554798	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs1554798-A	0.4667	7E-10	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1781	chr2	156844759	156844760	rs13017997	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	2q24.1	NR4A2	rs13017997-T	NR	6E-9		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1781	chr2	156844759	156844760	rs13017997	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q24.1	NR	rs13017997-T	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1781	chr2	156864815	156864816	rs187522732	30102679	Hara M	2018-08-10	Med Sci Sports Exerc	Genome-wide Association Study of Leisure-Time Exercise Behavior in Japanese Adults.	Leisure-time exercise behaviour (age-stratified)	6,749 Japanese ancestry active and inactive individuals aged over 56, 7,231 Japanese ancestry active and inactive individuals aged under 56	1,129 Japanese ancestry active and inactive individuals aged over 56, 907 Japanese ancestry active and inactive individuals aged under 56	2q24.1	NR4A2, KCNJ3	rs187522732-A	0.022	2E-7	(over 56 years)	0.1133	[0.070-0.156] unit increase	Illumina [up to 7094228] (imputed)	N
1781	chr2	156864815	156864816	rs187522732	30102679	Hara M	2018-08-10	Med Sci Sports Exerc	Genome-wide Association Study of Leisure-Time Exercise Behavior in Japanese Adults.	Leisure-time exercise behaviour	1,789 Japanese ancestry physically active cases, 12,191 Japanese ancestry physically inactive controls	250 Japanese ancestry physically active cases, 1,786 Japanese ancestry physically inactive controls	2q24.1	KCNJ3, NR4A2	rs187522732-A	0.209	8E-6		0.0614	[0.034-0.088] unit increase	Illumina [up to 7094228] (imputed)	N
1781	chr2	156883939	156883940	rs72904190	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	AC093375.1	rs72904190-A	NR	8E-9		0.02845948	[0.019-0.038] unit increase	Affymetrix [NR]	N
1781	chr2	156888499	156888500	rs1918172	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	2q24.1	intergenic	rs1918172-?	NR	5E-6	(count)			Perlegen [429981]	N
1782	chr2	156910406	156910407	rs72906060	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q24.1	ENSG00000235548	rs72906060-?	NR	3E-8		0.017926758	[0.012-0.024] unit increase	NR [7306098]	N
1782	chr2	156911599	156911600	rs72906064	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.1	NR	rs72906064-G	0.11829	2E-8		0.054142527	[0.035-0.073] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1782	chr2	156911599	156911600	rs72906064	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q24.1		rs72906064-?	NR	7E-10				NR [7857346] (imputed)	N
1782	chr2	156911599	156911600	rs72906064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.1	Intergenic	rs72906064-T	0.1222	1E-10	(MTAG)	0.0224	[0.016-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1782	chr2	156911599	156911600	rs72906064	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.1	Intergenic	rs72906064-T	0.1222	2E-8		0.0244	[0.016-0.033] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1782	chr2	156911599	156911600	rs72906064	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	ENSG00000235548	rs72906064-T	NR	2E-9		0.028425694	[0.019-0.038] unit decrease	Affymetrix [NR]	N
1782	chr2	156916524	156916525	rs17244395	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	NR	rs17244395-?	NR	2E-7		5.179	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1782	chr2	156916825	156916826	rs17244416	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs17244416-C	NR	3E-9		5.909	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1782	chr2	156925285	156925286	rs16839962	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q24.1	NR4A2, GPD2, LOC728038	rs16839962-T	0.13	9E-6	(HDL, sum)			Illumina [~ 2500000] (imputed)	N
1782	chr2	156926962	156926963	rs13032427	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	2q24.1	NR4A2	rs13032427-T	0.22	9E-7		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
1782	chr2	156926962	156926963	rs13032427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.1	Intergenic	rs13032427-T	0.2117	2E-9	(MTAG)	0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1782	chr2	156926962	156926963	rs13032427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.1	Intergenic	rs13032427-C	0.7883	7E-9		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1782	chr2	156933552	156933553	rs10177924	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	2q24.1	NR	rs10177924-?		3E-6	(females)			Illumina [1211988] (imputed)	N
1782	chr2	156950639	156950640	rs11692441	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x other green vegetables (green pepper and green beans) consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	2q24.1		rs11692441-G	NR	8E-6		0.2319	[0.13-0.33] unit increase	Illumina [285387]	N
1782	chr2	156996625	156996626	rs61597598	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	2q24.1	NR	rs61597598-G	NR	2E-8		0.01332	[0.0087-0.018] unit decrease	NR [11010159] (imputed)	N
1782	chr2	156996625	156996626	rs61597598	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	2q24.1	NR	rs61597598-G	NR	1E-7		0.01056	[0.0067-0.0144] unit decrease	NR [11010159] (imputed)	N
1782	chr2	156996625	156996626	rs61597598	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	2q24.1	NR	rs61597598-G	NR	5E-15		0.0118947	[0.0089-0.0149] unit decrease	NR [11010159] (imputed)	N
1782	chr2	156996625	156996626	rs61597598	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	2q24.1	NR	rs61597598-G	NR	1E-12	(adjusted for BMI)	0.01063	[0.0077-0.0136] unit decrease	NR [11010159] (imputed)	N
1782	chr2	156997444	156997445	rs113707721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q24.1		rs113707721-?	NR	4E-27				NR [~ 8900000] (imputed)	N
1782	chr2	157013034	157013035	rs72902175	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q24.1	NR4A2	rs72902175-T	0.13	2E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
1782	chr2	157016256	157016257	rs72902177	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q24.1	LOC101929378	rs72902177-T	0.1346	1E-7		0.0196	[0.012-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr2	157016256	157016257	rs72902177	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q24.1	LOC101929378	rs72902177-T	0.1346	1E-7		0.0183	[0.011-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr2	157016256	157016257	rs72902177	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q24.1	LOC101929378	rs72902177-T	0.1346	2E-21		0.0332	[0.026-0.04] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr2	157016256	157016257	rs72902177	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q24.1	LOC101929378	rs72902177-T	0.1346	2E-22		0.0335	[0.027-0.04] unit decrease	Affymetrix [19819130] (imputed)	N
1782	chr2	157016256	157016257	rs72902177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q24.1		rs72902177-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1783	chr2	157027214	157027215	rs148043289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.1		rs148043289-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1783	chr2	157040772	157040773	rs4538155	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q24.1	NR	rs4538155-T	NR	6E-9		0.762	unit increase	Affymetrix [14661600] (imputed)	N
1783	chr2	157046431	157046432	rs72904209	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q24.1	KCNJ3, NR4A2	rs72904209-T	0.88	3E-8		0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1783	chr2	157046431	157046432	rs72904209	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		2q24.1	KCNJ3, NR4A2	rs72904209-T	0.87	1E-6	(EA)	0.003	[0.0018-0.0042] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1783	chr2	157049216	157049217	rs11883686	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2q24.1		rs11883686-T	0.3322	1E-8		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1783	chr2	157053379	157053380	rs7567451	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	2q24.1	NR4A2	rs7567451-G	0.2654	6E-18		0.022050563	[0.016-0.028] unit decrease	NR [9417325] (imputed)	N
1783	chr2	157053379	157053380	rs7567451	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2q24.1	NR	rs7567451-G	0.2672	4E-8		0.01054	[0.0068-0.0143] unit decrease	NR [8968716] (imputed)	N
1783	chr2	157053379	157053380	rs7567451	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	2q24.1	NR	rs7567451-G	NR	5E-8		0.0144	NR unit decrease	NR [7259579]	N
1783	chr2	157053379	157053380	rs7567451	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q24.1	NR	rs7567451-G	NR	3E-9		0.01589	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
1783	chr2	157053379	157053380	rs7567451	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	2q24.1	NR	rs7567451-T	0.279707	4E-8		5.513	unit increase	NR [10847151] (imputed)	N
1783	chr2	157064316	157064317	rs1519799	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.1	Intergenic	rs1519799-A	0.5827	4E-9	(MTAG)	0.0137	[0.0092-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1783	chr2	157076200	157076201	rs72906124	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs72906124-T	0.942	6E-10		0.0185	[0.013-0.024] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1783	chr2	157076892	157076893	rs72906130	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	2q24.1	NR	rs72906130-G	0.1345	4E-14		1.06	[1.05-1.07]	Affymetrix, Illumina [10862568] (imputed)	N
1783	chr2	157096775	157096776	rs17188434	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	2q24.1	NR4A2	rs17188434-C	0.07	1E-9		4.5	[3.13-5.87] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1783	chr2	157100292	157100293	rs57601252	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Worry too long after an embarrassing experience	342,461 European ancestry individuals	NA	2q24.1	NR4A2	rs57601252-?	NR	3E-7				Affymetrix [up to 9327396] (imputed)	N
1783	chr2	157100292	157100293	rs57601252	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	2q24.1	NR4A2	rs57601252-A	NR	4E-8		0.01329	unit increase	Affymetrix [9327396] (imputed)	N
1783	chr2	157109394	157109395	rs10198345	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q24.1	NA	rs10198345-T	0.6565	1E-9		0.0109	[0.0074-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
1783	chr2	157109929	157109930	rs1226414	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q24.1	LINC01876	rs1226414-A	0.493166	2E-12		0.0143849	[0.01-0.018] unit decrease	NR [16516521] (imputed)	N
1783	chr2	157111024	157111025	rs1226413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q24.1		rs1226413-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1783	chr2	157111312	157111313	rs1226412	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	2q24.1	NR	rs1226412-T	NR	1E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
1783	chr2	157111312	157111313	rs1226412	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q24.1	NR4A2	rs1226412-?		2E-8				NR [6786993] (imputed)	N
1783	chr2	157111312	157111313	rs1226412	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	2q24.1	NR	rs1226412-T	0.7917	3E-18		1.023	[1.018-1.029]	NR [8098588] (imputed)	N
1783	chr2	157111312	157111313	rs1226412	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	2q24.1	LINC01876, NR4A2, GPD2	rs1226412-T	0.79	2E-8		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
1783	chr2	157116974	157116975	rs12994955	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	2q24.1		rs12994955-?	NR	3E-8				NR [8243736]	N
1783	chr2	157124094	157124095	rs835303	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2q24.1		rs835303-?	NR	6E-11		0.0235	unit decrease	NR [NR]	N
1783	chr2	157126963	157126964	rs4369815	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q24.1	NR4A2	rs4369815-T	0.93	2E-10		0.06	[0.04-0.08] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1783	chr2	157127414	157127415	rs2463652	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2q24.1	intergenic	rs2463652-?	NR	3E-9		0.0144339	[0.0097-0.0192] unit decrease	Affymetrix [25921788] (imputed)	N
1783	chr2	157128754	157128755	rs1919159	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q24.1	NR	rs1919159-G	0.790671174050262	2E-8		0.0063535157	[0.0041-0.0086] unit increase	NR [NR]	N
1783	chr2	157132878	157132879	rs59491086	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q24.1	NR	rs59491086-A	0.205198	3E-11		6.63	z score increase	NR [10847151] (imputed)	N
1783	chr2	157134494	157134495	rs72892121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs72892121-T	0.9321	2E-11	(MTAG)	0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1783	chr2	157134496	157134497	rs72892124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q24.1		rs72892124-?	NR	4E-16				NR [~ 8900000] (imputed)	N
1783	chr2	157134863	157134864	rs1431965	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q24.1	NR	rs1431965-C	0.208964038600037	2E-12		0.013455757	[0.0097-0.0172] unit decrease	NR [NR]	N
1783	chr2	157134863	157134864	rs1431965	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q24.1	NR	rs1431965-C	0.208964038600037	3E-12		0.008584944	[0.0062-0.011] unit decrease	NR [NR]	N
1783	chr2	157143611	157143612	rs1226574	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q24.1	NR	rs1226574-C	NR	2E-11		6.704	z score decrease	Affymetrix [10847151] (imputed)	N
1783	chr2	157145540	157145541	rs11903494	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q24.1	intergenic	rs11903494-T	0.2051	2E-10		6.353	z score decrease	Illumina [18485882] (imputed)	N
1784	chr2	157157147	157157148	rs76923064	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q24.1	NR	rs76923064-C	NR	3E-8		0.05634	[0.036-0.076] unit increase	Affymetrix [10847151] (imputed)	N
1784	chr2	157175765	157175766	rs549376728	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q24.1	RP11-605B16.1	rs549376728-T	0.0013	7E-6		0.881	[0.5-1.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1784	chr2	157176733	157176734	rs56355754	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs56355754-T	0.0646	3E-10	(MTAG)	0.0211	[0.014-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1784	chr2	157198560	157198561	rs115182184	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q24.1	intergenic	rs115182184-G	NR	8E-6	(AA)	0.952	unit increase	Illumina [at least 5086170] (imputed)	N
1785	chr2	157306687	157306688	rs298235	28051079	Warner SC	2017-01-04	Eur J Hum Genet	Genome-wide association scan of neuropathic pain symptoms post total joint replacement highlights a variant in the protein-kinase C gene.	Possible neuropathic pain in post total joint replacement surgery for osteoarthritis	109 cases, 504 controls.	NA	2q24.1	GPD2	rs298235-A	0.016	3E-6		6.72	[2.67-16.92]	Illumina [548381]	N
1785	chr2	157354502	157354503	rs147372168	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2q24.1	GPD2	rs147372168-G	0.01	3E-6		4.17	[2.29-7.60]	Illumina [7959153] (imputed)	N
1785	chr2	157355077	157355078	rs297578	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs297578-A	NR	2E-9		6.021	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1785	chr2	157356459	157356460	rs297587	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q24.1	NR	rs297587-A	0.2862	2E-10		0.0497	[0.034-0.065] unit decrease	Illumina [~ 10600000] (imputed)	N
1785	chr2	157358749	157358750	rs297589	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2q24.1	GPD2	rs297589-?	NR	6E-13		1.061	[1.044-1.078]	Illumina [13762925] (imputed)	N
1785	chr2	157363742	157363743	rs297593	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q24.1	GPD2	rs297593-T	0.2856	5E-15		7.816	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1785	chr2	157365592	157365593	rs297595	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	NR	rs297595-?	NR	3E-6		4.64	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1785	chr2	157376471	157376472	rs192716	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q24.1	GPD2	rs192716-?		1E-35				Affymetrix, Illumina [NR] (imputed)	N
1785	chr2	157381753	157381754	rs56051278	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	2q24.1	GPD2	rs56051278-G	0.265	2E-29		0.066	[0.055-0.078] unit increase	Illumina [7428049] (imputed)	N
1786	chr2	157464769	157464770	rs7561404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.1		rs7561404-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1786	chr2	157485516	157485517	rs1368250	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs1368250-T	0.0284	3E-8		0.025	[0.016-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.1	NR	rs13425585-C	0.484095	2E-11		0.04240561	[0.03-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs13425585-C	0.5084	2E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs13425585-C	0.5084	1E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.1	Intergenic	rs13425585-C	0.51	1E-11		0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.1	GPD2	rs13425585-C	NR	4E-8		5.474	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	GPD2	rs13425585-C	NR	8E-13		0.021967182	[0.016-0.028] unit decrease	Affymetrix [NR]	N
1786	chr2	157487272	157487273	rs13425585	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q24.1	GPD2	rs13425585-?	NR	1E-9		6.103	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1786	chr2	157487272	157487273	rs13425585	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q24.1	GPD2	rs13425585-?	NR	4E-9		5.87	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1786	chr2	157488276	157488277	rs6436555	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q24.1		rs6436555-?	NR	2E-10				NR [7857346] (imputed)	N
1786	chr2	157488276	157488277	rs6436555	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs6436555-A	NR	4E-12		6.938	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1786	chr2	157490424	157490425	rs7579670	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs7579670-T	NR	3E-9		5.955	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1786	chr2	157490424	157490425	rs7579670	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	GPD2	rs7579670-T	NR	3E-8		0.017866436	[0.012-0.024] unit increase	Affymetrix [NR]	N
1786	chr2	157493291	157493292	rs67450615	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.1	Intergenic	rs67450615-T	0.7967	5E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1786	chr2	157493291	157493292	rs67450615	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs67450615-T	NR	4E-9		5.871	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1786	chr2	157493291	157493292	rs67450615	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	GPD2	rs67450615-T	NR	7E-10		0.023290893	[0.016-0.031] unit increase	Affymetrix [NR]	N
1786	chr2	157507664	157507665	rs68052276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.1		rs68052276-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1786	chr2	157520185	157520186	rs67374027	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs67374027-A	0.2325	2E-14	(MTAG)	0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr2	157524034	157524035	rs13023735	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.1	GPD2	rs13023735-A	NR	4E-8		0.018096352	[0.012-0.025] unit increase	Affymetrix [NR]	N
1786	chr2	157532112	157532113	rs4325706	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.1	Intergenic	rs4325706-T	0.2394	1E-15	(MTAG)	0.0215	[0.016-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr2	157536577	157536578	rs13027493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.1	Intergenic	rs13027493-A	0.237	6E-15	(MTAG)	0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1786	chr2	157548366	157548367	rs6740709	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.1	NR	rs6740709-A	NR	1E-11		6.797	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1787	chr2	157551241	157551242	rs16840719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs16840719-T	0.2233	5E-11	(conditional-joint)	0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1787	chr2	157552859	157552860	rs7601713	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	2q24.1	intergenic	rs7601713-A	0.23	2E-6		0.16	[0.10-0.22] unit decrease	Illumina [~ 318327]	N
1787	chr2	157580791	157580792	rs62178545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q24.1		rs62178545-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1787	chr2	157598677	157598678	rs8179646	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	2q24.1	GPD2	rs8179646-T	0.38	6E-6	(Southern European)	1.17	[1.03-1.34]	Illumina [546271]	N
1787	chr2	157599686	157599687	rs111688960	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q24.1	GPD2	rs111688960-A	0.013	1E-8	(EA)	0.051	[0.033-0.069] unit increase	NR [12082474] (imputed)	N
1788	chr2	157712036	157712037	rs13387240	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.1	NR	rs13387240-?	NR	3E-23				Affymetrix [NR]	N
1788	chr2	157718357	157718358	rs13409177	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	2q24.1	AC096589.2, AC096589.1	rs13409177-A	0.0573	2E-6		1.46	[1.27-1.66]	Illumina [64973696] (imputed)	N
1789	chr2	157868867	157868868	rs16841200	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q24.1	GPD2, CDK7PS	rs16841200-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1790	chr2	157973985	157973986	rs149456251	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	2q24.1	NR	rs149456251-?	NR	5E-6		0.0603	[0.035-0.086] unit increase	Illumina [~ 7800000] (imputed)	N
1790	chr2	157974440	157974441	rs76868064	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.1	NR	rs76868064-?	NR	7E-6		0.0076231	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
1791	chr2	158080875	158080876	rs263305	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.1	KIAA1189	rs263305-?	NR	4E-6	(TAG 54:9)	0.8592001	[0.49-1.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1791	chr2	158103733	158103734	rs2100073	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.1	NR	rs2100073-?	NR	2E-39				Affymetrix [NR]	N
1791	chr2	158106699	158106700	rs140331584	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2q24.1	NR	rs140331584-?	NR	2E-6		3.2115	[1.38-5.05] unit increase	Illumina [at least 560000] (imputed)	N
1791	chr2	158112899	158112900	rs2197585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.1		rs2197585-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1791	chr2	158123569	158123570	rs16841450	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2q24.1	GALNT5	rs16841450-A	0.0593	5E-6		0.2677	[0.15-0.38] unit decrease	NR [NR] (imputed)	N
1791	chr2	158152916	158152917	rs79766504	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	2q24.1		rs79766504-?	NR	2E-24		0.181651	[0.15-0.22] unit increase	NR [9800000] (imputed)	N
1791	chr2	158152916	158152917	rs79766504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q24.1	NR	rs79766504-C	NR	8E-16		0.1637	[0.12-0.2] unit increase	Affymetrix [9000000] (imputed)	N
1791	chr2	158185840	158185841	rs79324236	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	2q24.1		rs79324236-G	0.914875	6E-6		0.0149812	[0.0084-0.0216] unit decrease	Illumina [13900000] (imputed)	N
1792	chr2	158294017	158294018	rs113704612	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q24.1	CYTIP	rs113704612-T	0.0352	1E-11		0.0802	[0.057-0.103] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1792	chr2	158294017	158294018	rs113704612	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q24.1	NR	rs113704612-T	0.0251	7E-6	(men)	0.0897	[0.051-0.129] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1792	chr2	158314992	158314993	rs1459219	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.1	NR	rs1459219-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1792	chr2	158325759	158325760	rs13384965	34119372	Lord J	2021-05-04	Neurobiol Aging	A genome-wide association study of plasma phosphorylated tau181.	Plasma p-tau181 levels	1,153 European ancestry individuals	NA	2q24.1		rs13384965-?	NR	1E-7		0.2848	[0.18-0.39] unit decrease	Illumina [5688385] (imputed)	N
1792	chr2	158334969	158334970	rs190545385	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	2q24.1	NR	rs190545385-G	0.9727	1E-9		1.6839	[1.14-2.23] unit increase	Affymetrix, Illumina [12989440] (imputed)	N
1793	chr2	158335339	158335340	rs7568172	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q24.1	NR	rs7568172-G	0.9396	3E-12		0.0674	[0.049-0.086] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1793	chr2	158339549	158339550	rs13426680	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q24.1	CYTIP	rs13426680-A	0.9373	7E-10		1.09	[1.06-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1793	chr2	158344454	158344455	rs7563664	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2q24.1	ACVR1C	rs7563664-T	0.11327299999999996	7E-6		0.021935	[0.012-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1793	chr2	158344454	158344455	rs7563664	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q24.1	ACVR1C	rs7563664-T	0.106718	2E-8		0.023511	[0.015-0.032] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1793	chr2	158346569	158346570	rs6707470	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	2q24.1	NR	rs6707470-A	0.9811	1E-6	(Trans/trans-18:2, EA)	0.008	[0.0049-0.0111] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1793	chr2	158348075	158348076	rs6757720	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	2q24.1	NR	rs6757720-C	0.981	9E-7	(Trans/trans-18:2, EA)	0.0082	[0.0049-0.0115] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1793	chr2	158348471	158348472	rs7566684	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	2q24.1	NR	rs7566684-A	0.981	8E-7	(Trans/trans-18:2, EA)	0.0082	[0.0049-0.0115] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1793	chr2	158354838	158354839	rs536899661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q24.1		rs536899661-A	NR	4E-9		0.0333	[0.022-0.044] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1793	chr2	158393300	158393301	rs114666647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs114666647-C	NR	6E-15		0.0966908	[0.072-0.121] unit decrease	Affymetrix [319769] (imputed)	N
1793	chr2	158393300	158393301	rs114666647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs114666647-C	NR	8E-15		0.0963586	[0.072-0.121] unit decrease	Affymetrix [319769] (imputed)	N
1793	chr2	158393300	158393301	rs114666647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs114666647-C	NR	5E-13		0.0904356	[0.066-0.115] unit decrease	Affymetrix [321114] (imputed)	N
1793	chr2	158393300	158393301	rs114666647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs114666647-C	NR	3E-16		0.102614	[0.078-0.127] unit decrease	Affymetrix [321169] (imputed)	N
1793	chr2	158406864	158406865	rs56188432	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.1	NR	rs56188432-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1793	chr2	158406864	158406865	rs56188432	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2q24.1	ACVR1C	rs56188432-G	0.0023779999999999912	2E-7		0.167811	[0.1-0.23] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1793	chr2	158406864	158406865	rs56188432	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q24.1	ACVR1C	rs56188432-G	0.00229800000000002	1E-16		0.258489	[0.2-0.32] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs55920843-G	NR	9E-19		0.114585	[0.089-0.14] unit decrease	Affymetrix [319769] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs55920843-G	NR	5E-19		0.115516	[0.09-0.141] unit decrease	Affymetrix [319769] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs55920843-G	NR	6E-20		0.119403	[0.094-0.145] unit decrease	Affymetrix [321114] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q24.1	ACVR1C	rs55920843-G	NR	7E-9		0.0801534	[0.053-0.107] unit increase	Affymetrix [323123] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs55920843-G	NR	3E-21		0.124206	[0.099-0.15] unit decrease	Affymetrix [321169] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q24.1	ACVR1C	rs55920843-G	0.011875	2E-10		0.06532125	[0.045-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q24.1	ACVR1C	rs55920843-G	0.011875	2E-10		0.06546863	[0.045-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q24.1	ACVR1C	rs55920843-G	0.0118780000000001	2E-11		0.06898064	[0.049-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.1	NR	rs55920843-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.1	NR	rs55920843-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	2q24.1	ACVR1C	rs55920843-T	0.9888	2E-15		0.1134	[0.086-0.141] unit increase	Affymetrix, Illumina [at least 228985]	N
1793	chr2	158412700	158412701	rs55920843	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	2q24.1	ACVR1C	rs55920843-T	0.9883	3E-14		0.1092	[0.081-0.137] unit increase	Affymetrix, Illumina [at least 228985]	N
1793	chr2	158412700	158412701	rs55920843	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	2q24.1	ACVR1C	rs55920843-T	0.989	5E-10		0.0652	[0.045-0.086] unit increase	Affymetrix, Illumina [at least 228985]	N
1793	chr2	158412700	158412701	rs55920843	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	2q24.1	ACVR1C	rs55920843-T	0.9884	2E-9		0.0633	[0.043-0.084] unit increase	Affymetrix, Illumina [at least 228985]	N
1793	chr2	158412700	158412701	rs55920843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.1		rs55920843-?	NR	9E-19				NR [~ 8900000] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q24.1	NR	rs55920843-T	0.9886	3E-20		0.0859	[0.068-0.104] unit increase	NR [~ 27400000] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.1	NA	rs55920843-T	0.9886	2E-11		0.0623	[0.044-0.08] unit increase	NR [~ 27400000] (imputed)	N
1793	chr2	158412700	158412701	rs55920843	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q24.1	NR	rs55920843-T	0.9886	2E-11		0.0623	[0.044-0.08] unit increase	NR [~ 27400000] (imputed)	N
1793	chr2	158415563	158415564	rs57198438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs57198438-G	NR	6E-13		0.0440288	[0.032-0.056] unit increase	Affymetrix [319769] (imputed)	N
1793	chr2	158415563	158415564	rs57198438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs57198438-G	NR	4E-13		0.0442626	[0.032-0.056] unit increase	Affymetrix [319769] (imputed)	N
1793	chr2	158415563	158415564	rs57198438	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs57198438-G	NR	2E-12		0.0436581	[0.032-0.056] unit increase	Affymetrix [321169] (imputed)	N
1793	chr2	158434568	158434569	rs12614487	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q24.1		rs12614487-T	NR	2E-14		0.0243	[0.018-0.031] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1793	chr2	158434568	158434569	rs12614487	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs12614487-T	NR	6E-14		0.0402829	[0.03-0.051] unit increase	Affymetrix [321114] (imputed)	N
1793	chr2	158434568	158434569	rs12614487	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q24.1	ACVR1C	rs12614487-?	NR	5E-10		0.0297	[0.021-0.038] unit decrease	Affymetrix [5701386] (imputed)	N
1793	chr2	158437682	158437683	rs4377290	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q24.1	ACVR1C	rs4377290-T	0.5033	2E-11		0.0174	[0.012-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1793	chr2	158442004	158442005	rs10184376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q24.1	NR	rs10184376-T	NR	1E-10		0.0285	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1793	chr2	158442004	158442005	rs10184376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q24.1	NR	rs10184376-T	NR	3E-13		0.0323	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1793	chr2	158442004	158442005	rs10184376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q24.1	NR	rs10184376-T	NR	2E-10		0.0284	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1793	chr2	158442004	158442005	rs10184376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q24.1	NR	rs10184376-T	NR	4E-11		0.0293	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1793	chr2	158447570	158447571	rs7601153	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q24.1	NR	rs7601153-C	0.602788	2E-7		0.011101	[0.0069-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1793	chr2	158447570	158447571	rs7601153	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q24.1	ACVR1C	rs7601153-C	0.602788	1E-8		0.012034	[0.0079-0.0162] unit increase	Affymetrix [NR] (imputed)	N
1793	chr2	158449080	158449081	rs149447188	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q24.1	NR	rs149447188-C	0.9911	2E-10		0.1702	[0.12-0.22] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1793	chr2	158464848	158464849	rs10201242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q24.1		rs10201242-A	NR	2E-10		0.0226	[0.016-0.03] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1793	chr2	158464848	158464849	rs10201242	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q24.1	ACVR1C	rs10201242-G	0.926299	3E-16		0.00357545	[0.0027-0.0044] unit increase	Affymetrix [13995440] (imputed)	N
1793	chr2	158464848	158464849	rs10201242	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q24.1	ACVR1C	rs10201242-G	0.93	3E-12		6.97	z-score increase	Affymetrix [4311822] (imputed)	N
1794	chr2	158481991	158481992	rs10164853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q24.1		rs10164853-G	NR	2E-11		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1794	chr2	158481991	158481992	rs10164853	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q24.1	ACVR1C	rs10164853-?		5E-9		0.0304	[0.02-0.041] unit decrease	Illumina [31500000] (imputed)	N
1794	chr2	158481991	158481992	rs10164853	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q24.1	ACVR1C	rs10164853-?		4E-9		0.0381	[0.025-0.051] unit decrease	Illumina [31500000] (imputed)	N
1794	chr2	158481991	158481992	rs10164853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.1	NR	rs10164853-G	0.11197	7E-10				Affymetrix, Illumina [24653286] (imputed)	N
1794	chr2	158492718	158492719	rs3911308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs3911308-T	NR	2E-8		0.0409133	[0.027-0.055] unit increase	Affymetrix [321114] (imputed)	N
1794	chr2	158494099	158494100	rs2444769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2q24.1		rs2444769-A	NR	1E-9		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1794	chr2	158495348	158495349	rs2848657	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q24.1	ACVR1C	rs2848657-A	0.1229	2E-9		0.2424	[0.16-0.32] mmHg decrease	Affymetrix [NR] (imputed)	N
1794	chr2	158496501	158496502	rs1941929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs1941929-A	NR	3E-10		0.0254485	[0.018-0.033] unit decrease	Affymetrix [321169] (imputed)	N
1794	chr2	158499901	158499902	rs1220128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs1220128-G	NR	2E-9		0.0237618	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158499901	158499902	rs1220128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs1220128-G	NR	1E-9		0.0242344	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1794	chr2	158499901	158499902	rs1220128	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q24.1	ACVR1C	rs1220128-C	0.8525	5E-16		0.1733	[0.13-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1794	chr2	158503738	158503739	rs2444770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs2444770-C	NR	2E-9		0.0235698	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158503738	158503739	rs2444770	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q24.1	NR	rs2444770-T	0.85	3E-16		0.021	[0.016-0.026] unit increase	Affymetrix [2446094] (imputed)	N
1794	chr2	158503738	158503739	rs2444770	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q24.1	NR	rs2444770-T	0.85	5E-8				Affymetrix [2446094] (imputed)	N
1794	chr2	158508269	158508270	rs59776887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q24.1		rs59776887-G	0.862562	2E-11		0.021680051	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr2	158508269	158508270	rs59776887	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q24.1		rs59776887-G	0.862559	2E-12		0.022875367	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr2	158508270	158508271	rs11900786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q24.1		rs11900786-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1794	chr2	158514968	158514969	rs2509902	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.1	NR	rs2509902-C	0.87194	4E-17				Affymetrix, Illumina [19872809] (imputed)	N
1794	chr2	158516336	158516337	rs72927479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs72927479-G	NR	3E-8		0.034334	[0.022-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158516336	158516337	rs72927479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs72927479-G	NR	2E-8		0.0345168	[0.022-0.047] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158516336	158516337	rs72927479	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.1	NR	rs72927479-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1794	chr2	158516336	158516337	rs72927479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.1		rs72927479-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1794	chr2	158519801	158519802	rs2848649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q24.1		rs2848649-A	NR	6E-11		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1794	chr2	158519801	158519802	rs2848649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q24.1	NR	rs2848649-A	0.864428	2E-11		0.022299318	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr2	158519801	158519802	rs2848649	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.1	NR	rs2848649-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1794	chr2	158520904	158520905	rs10195713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q24.1		rs10195713-T	0.864242	2E-22		0.031898696	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr2	158520904	158520905	rs10195713	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q24.1		rs10195713-T	0.864261	2E-18		0.02860904	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1794	chr2	158520904	158520905	rs10195713	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q24.1	NR	rs10195713-T	0.864395	3E-17		0.02494	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1794	chr2	158520904	158520905	rs10195713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q24.1		rs10195713-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1794	chr2	158525225	158525226	rs12694933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs12694933-C	NR	2E-8		0.0242994	[0.016-0.033] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158525225	158525226	rs12694933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs12694933-C	NR	4E-8		0.0238468	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1794	chr2	158525225	158525226	rs12694933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs12694933-C	NR	1E-8		0.0250082	[0.016-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1794	chr2	158525225	158525226	rs12694933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs12694933-C	NR	6E-9		0.0256127	[0.017-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1794	chr2	158531775	158531775	rs11435148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs11435148-C	NR	3E-8		0.0320167	[0.021-0.043] unit decrease	Affymetrix [321114] (imputed)	N
1794	chr2	158531775	158531775	rs11435148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1C	rs11435148-C	NR	2E-8		0.0325785	[0.021-0.044] unit decrease	Affymetrix [321169] (imputed)	N
1795	chr2	158604295	158604296	rs74577731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.1	ACVR1	rs74577731-A	NR	3E-10		0.0792145	[0.054-0.104] unit decrease	Affymetrix [319769] (imputed)	N
1795	chr2	158604295	158604296	rs74577731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.1	ACVR1	rs74577731-A	NR	1E-10		0.0810345	[0.056-0.106] unit decrease	Affymetrix [319769] (imputed)	N
1795	chr2	158604295	158604296	rs74577731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.1	ACVR1	rs74577731-A	NR	3E-9		0.0756185	[0.051-0.101] unit decrease	Affymetrix [321114] (imputed)	N
1795	chr2	158604295	158604296	rs74577731	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.1	ACVR1	rs74577731-A	NR	6E-11		0.0837131	[0.059-0.109] unit decrease	Affymetrix [321169] (imputed)	N
1795	chr2	158676943	158676944	rs186905001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q24.1		rs186905001-C	NR	9E-9		0.075	[0.05-0.1] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1796	chr2	158772057	158772058	rs7578180	28459102	Zhang S	2016-04-20	JDR Clin Trans Res	The Novel ASIC2 Locus is Associated with Severe Gingival Inflammation.	Severe gingival inflammation	4,077 European American individuals	NA	2q24.1	ACVR1	rs7578180-?	NR	5E-6		0.358724	[0.21-0.51] unit increase	Affymetrix [2500000] (imputed)	N
1796	chr2	158778824	158778825	rs4130274	28459102	Zhang S	2016-04-20	JDR Clin Trans Res	The Novel ASIC2 Locus is Associated with Severe Gingival Inflammation.	Severe gingival inflammation	4,077 European American individuals	NA	2q24.1	UPP2	rs4130274-?	NR	5E-6		0.360781	[0.21-0.52] unit increase	Affymetrix [2500000] (imputed)	N
1796	chr2	158780203	158780204	rs10183640	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.1	intergenic	rs10183640-?	0.35	5E-7	(Dominant)	1.12	[1.08-1.18]	Affymetrix [319222]	N
1796	chr2	158790424	158790425	rs35806662	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	2q24.1	LOC100130766	rs35806662-?	NR	6E-7	(% Change in score)	0.2	[NR] unit decrease	Illumina [~ 7000000] (imputed)	N
1796	chr2	158802711	158802712	rs7607140	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (maternal effect)	up to 439 European ancestry trios	NA	2q24.1	intergenic	rs7607140-?	NR	2E-6		2.511428	[1.712819-3.682393]	Illumina [at least 4756722] (imputed)	N
1796	chr2	158843017	158843018	rs6437122	25469926	Gottlieb DJ	2014-12-02	Mol Psychiatry	Novel loci associated with usual sleep duration: the CHARGE Consortium Genome-Wide Association Study.	Sleep duration	47,180 European ancestry individuals	4,771 African American individuals	2q24.1	UPP2	rs6437122-?	NR	6E-6	(EA)	3.25	[1.84-4.66] unit decrease	Affymetrix, Illumina [2033301]	N
1797	chr2	158977793	158977794	rs2074955	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q24.1	UPP2	rs2074955-C	NR	1E-7	(Controls)			Illumina [498205]	N
1798	chr2	159095495	159095496	rs12998032	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	2q24.1	NR	rs12998032-C	0.44	7E-10		0.3	[0.2-0.4] unit increase	Affymetrix [9231066] (imputed)	N
1798	chr2	159095495	159095496	rs12998032	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	2q24.1	NR	rs12998032-C	0.44	7E-10		0.3	[0.2-0.4] unit increase	Affymetrix [9231066] (imputed)	N
1799	chr2	159137556	159137557	rs116466468	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q24.1	NR	rs116466468-T	0.7593	2E-10		1.045	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1799	chr2	159182747	159182748	rs12617237	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	2q24.1	NR	rs12617237-?	NR	2E-6		1.3453282	[1.19-1.52]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1799	chr2	159199834	159199835	rs80319144	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	2q24.1	CCDC148	rs80319144-T	0.24	6E-20		0.9	[0.88-0.92]	Affymetrix, Illumina [15838848] (imputed)	N
1799	chr2	159199834	159199835	rs80319144	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	2q24.1	CCDC148, PKP4, TANC1	rs80319144-C	0.76	3E-25		1.1111112	[1.09-1.14]	Affymetrix, Illumina [6864281] (imputed)	N
1799	chr2	159202928	159202929	rs73968924	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	2q24.1	CCDC148	rs73968924-T	0.0291	9E-6		0.3272	[0.18-0.47] unit decrease	NR [NR] (imputed)	N
1800	chr2	159293748	159293749	rs184539343	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	2q24.1	CCDC148	rs184539343-T	0.046	9E-6		0.051	[0.027-0.075] unit increase	Illumina [7358575] (imputed)	N
1800	chr2	159311575	159311576	rs55873205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q24.1		rs55873205-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1800	chr2	159316532	159316533	rs192962396	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	2q24.1		rs192962396-?	NR	7E-7		2.69547		NR [NR] (imputed)	N
1800	chr2	159325924	159325925	rs4664962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q24.1	NR	rs4664962-C	0.420454	1E-10		0.012035	[0.0084-0.0157] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1800	chr2	159353856	159353857	rs1117199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q24.1	NR	rs1117199-T	0.420077	3E-10		0.011726	[0.0081-0.0154] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1800	chr2	159354657	159354658	rs74834740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q24.1		rs74834740-G	NR	9E-10		0.0202	[0.014-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1800	chr2	159373373	159373374	rs1110508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.1		rs1110508-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1801	chr2	159385193	159385193	rs59566011	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	2q24.1	Intergenic	rs59566011-GA	0.569	1E-6		1.068	[NR]	Illumina [9112387] (imputed)	N
1801	chr2	159406249	159406250	rs3771602	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q24.1	NA	rs3771602-G		5E-12		0.0130792	[0.0094-0.0168] unit increase	Illumina [13288253] (imputed)	N
1801	chr2	159415420	159415421	rs3755405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q24.1		rs3755405-C	NR	2E-10		0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1801	chr2	159419175	159419176	rs4664976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.1	NR	rs4664976-C	0.576638	5E-10				Affymetrix, Illumina [24332387] (imputed)	N
1801	chr2	159419738	159419739	rs3771608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q24.1		rs3771608-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1801	chr2	159429378	159429379	rs72936986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q24.1		rs72936986-C	NR	1E-8		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1801	chr2	159454437	159454438	rs4664983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.1		rs4664983-T	0.1987	4E-9		0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1801	chr2	159454437	159454438	rs4664983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.1	Intergenic	rs4664983-T	0.1987	2E-8	(MTAG)	0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1801	chr2	159466013	159466014	rs10208720	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.1	Intergenic	rs10208720-T	0.0888	2E-8	(MTAG)	0.0162	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1801	chr2	159473855	159473856	rs7563270	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.1	Intergenic	rs7563270-A	0.069	3E-8	(MTAG)	0.0195	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1802	chr2	159538715	159538716	rs2711042	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q24.1		rs2711042-?	NR	3E-8				NR [NR]	N
1802	chr2	159538715	159538716	rs2711042	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q24.1		rs2711042-?	NR	3E-8				NR [NR]	N
1802	chr2	159538773	159538774	rs2528595	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q24.1		rs2528595-?	NR	5E-9				NR [NR]	N
1802	chr2	159538773	159538774	rs2528595	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q24.1		rs2528595-?	NR	3E-8				NR [NR]	N
1802	chr2	159538773	159538774	rs2528595	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q24.1		rs2528595-?	NR	5E-8				NR [NR]	N
1802	chr2	159539516	159539517	rs723539	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (donor effect)	Up to 2,921 European ancestry individuals	NA	2q24.1	PKP4-AS1	rs723539-A	NR	6E-6				Illumina [up to 3951530] (imputed)	N
1802	chr2	159540994	159540995	rs76591930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q24.1		rs76591930-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1802	chr2	159596969	159596970	rs7608769	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q24.1	ENSG00000204380	rs7608769-C	0.657299233970104	6E-7		0.0028349	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1802	chr2	159607759	159607760	rs62183012	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q24.1	NR	rs62183012-C	0.2876	3E-9		0.016234135	[0.011-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1802	chr2	159613195	159613196	rs6437198	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	2q24.1		rs6437198-C	0.277	5E-6		11.38	[6.625-16.13] unit decrease	Affymetrix [6939676] (imputed)	N
1802	chr2	159641670	159641671	rs116518699	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs116518699-T	0.988	3E-6	(AA)	0.072	unit increase	Illumina [NR] (imputed)	N
1803	chr2	159669047	159669048	rs2102749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q24.1		rs2102749-C	NR	3E-10		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1803	chr2	159670448	159670449	rs16843372	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.1	DAPL1, PKP4	rs16843372-G	0.359	1E-6	(TBF-b1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1803	chr2	159677244	159677245	rs145710351	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs145710351-A	0.99	4E-6	(AA)	0.076	unit increase	Illumina [NR] (imputed)	N
1803	chr2	159689464	159689465	rs148444376	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs148444376-C	0.989	4E-6	(AA)	0.076	unit increase	Illumina [NR] (imputed)	N
1803	chr2	159695076	159695077	rs181559417	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2q24.1	DAPL1	rs181559417-?	NR	6E-9	(EA)	2.247	[-0.39704-4.89104] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1803	chr2	159695076	159695077	rs181559417	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (1df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	2q24.1	DAPL1	rs181559417-?	NR	8E-7	(EA)	11.94	[7.19-16.69] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1803	chr2	159700579	159700580	rs1125355	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	2q24.1	DAPL1, OR7E89P	rs1125355-A	0.26	4E-6		1.16	[1.09-1.23]	NR [NR]	N
1803	chr2	159729056	159729057	rs148169454	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs148169454-A	0.989	2E-6	(AA)	0.087	unit increase	Illumina [NR] (imputed)	N
1803	chr2	159755536	159755537	rs184118729	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.1	Intergenic	rs184118729-A	0.993	2E-7	(AA)	0.118	unit increase	Illumina [NR] (imputed)	N
1804	chr2	159810690	159810691	rs7565830	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q24.2	NR	rs7565830-G	NR	3E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1804	chr2	159810690	159810691	rs7565830	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q24.2	TANC1	rs7565830-A	0.6281	2E-8		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1804	chr2	159810690	159810691	rs7565830	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q24.2	TANC1	rs7565830-A	0.7164	7E-9		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1804	chr2	159880104	159880105	rs11674055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.2		rs11674055-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1804	chr2	159899488	159899489	rs7582141	24974847	Fachal L	2014-06-29	Nat Genet	A three-stage genome-wide association study identifies a susceptibility locus for late radiotherapy toxicity at 2q24.1.	Response to radiotherapy in prostate cancer (toxicity)	Up to 652 European ancestry cases	849 European ancestry cases	2q24.2	TANC1, BTF3L4P2, GSTM3P2	rs7582141-T	0.04	5E-11	(late toxicity)	0.37	[NR] unit increase	Affymetrix [552597]	N
1805	chr2	159950951	159950952	rs169073	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.2	WDSUB1	rs169073-?	NR	3E-6	(TAG 58:11)	0.3666259	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
1805	chr2	159954174	159954175	rs34588551	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q24.2		rs34588551-?	NR	5E-33		0.023993	[0.02-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
1805	chr2	159954174	159954175	rs34588551	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q24.2	TANC1	rs34588551-C	0.629095	8E-6	(men)	0.0248973	[0.015-0.035] unit decrease	NR [17166351] (imputed)	N
1805	chr2	159954174	159954175	rs34588551	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q24.2	TANC1	rs34588551-C	0.628906	2E-9		0.0205898	[0.014-0.027] unit decrease	NR [17166351] (imputed)	N
1805	chr2	159958425	159958426	rs7585857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q24.2		rs7585857-C	NR	1E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1805	chr2	159964551	159964552	rs448513	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	2q24.2	NR	rs448513-C	0.3385	4E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1805	chr2	159965388	159965389	rs890622	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	2q24.2	TANC1	rs890622-C		2E-6	(AA)	0.08	[0.041-0.119] unit decrease	Illumina [at least 3251541] (imputed)	N
1805	chr2	159973103	159973104	rs67674876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q24.2		rs67674876-?	NR	1E-28				NR [~ 8900000] (imputed)	N
1805	chr2	159983206	159983207	rs34324915	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q24.2	TANC1	rs34324915-A	0.640644	3E-28		0.0211363	[0.017-0.025] unit decrease	NR [13737936] (imputed)	N
1805	chr2	160020509	160020510	rs2069035	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q24.2		rs2069035-?	NR	2E-35		0.0255014	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1806	chr2	160052730	160052731	rs17494056	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals		TANC1	rs17494056-C	0.27	7E-7		0.1844	[0.11-0.26] unit decrease	Affymetrix [19941912] (imputed)	N
1806	chr2	160064158	160064159	rs111640264	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2q24.2	TANC1, WDSUB1, BAZ2B, GSTM3P2	rs111640264-A	NR	3E-7	(resting duration, weekdays)	0.5271	[0.33-0.73] unit decrease	Affymetrix [7141204] (imputed)	N
1806	chr2	160069755	160069756	rs13022357	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q24.2	intergenic	rs13022357-?	0.09	1E-6	(Recessive)	1.72	[1.38-2.14]	Affymetrix [319222]	N
1806	chr2	160098265	160098266	rs58061225	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q24.2	WDSUB1	rs58061225-?		8E-6				Illumina [4322238] (imputed)	N
1806	chr2	160102680	160102681	rs7573782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q24.2	WDSUB1	rs7573782-T	0.540277	7E-9		0.012977795	[0.0086-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
1806	chr2	160102680	160102681	rs7573782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q24.2	WDSUB1	rs7573782-T	0.540249	6E-17		0.018687077	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1806	chr2	160106618	160106619	rs113193373	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q24.2		rs113193373-?	NR	2E-15		0.0163422	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1806	chr2	160137168	160137169	rs13026565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q24.2	NR	rs13026565-C	0.537312	5E-12		0.013423	[0.0096-0.0172] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1806	chr2	160141996	160141997	rs78712300	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2q24.2	WDSUB1	rs78712300-T	0.044	9E-7		0.26	[0.16-0.36] unit increase	Affymetrix [7435577] (imputed)	N
1806	chr2	160144133	160144134	rs35349053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs35349053-T	0.522031	7E-10				Affymetrix, Illumina [22063850] (imputed)	N
1806	chr2	160146024	160146025	rs112016443	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2q24.2	WDSUB1	rs112016443-A	0.025	2E-9		0.42	[0.28-0.56] unit increase	Affymetrix [7435577] (imputed)	N
1806	chr2	160146364	160146365	rs6735318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q24.2		rs6735318-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1806	chr2	160146610	160146611	rs55770976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q24.2	WDSUB1	rs55770976-C	0.546709	2E-10		0.014420314	[0.01-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
1806	chr2	160159641	160159642	rs73006707	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2q24.2	CNTNAP2	rs73006707-G	0.039	4E-7		0.29	[0.18-0.40] unit increase	Affymetrix [7435577] (imputed)	N
1807	chr2	160170898	160170899	rs141083117	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2q24.2	BAZ2B	rs141083117-C	0.023	7E-7		0.37	[0.23-0.52] unit increase	Affymetrix [7435577] (imputed)	N
1807	chr2	160190208	160190209	rs4665058	21738491	Arking DE	2011-06-30	PLoS Genet	Identification of a sudden cardiac death susceptibility locus at 2q24.2 through genome-wide association in European ancestry individuals.	Sudden cardiac arrest	1,283 European ancestry cases, ~20,000 European ancestry controls	3,119 European ancestry cases, 11,146 European ancestry controls	2q24.2	BAZ2B	rs4665058-A	0.014	2E-10		1.92	[1.57-2.34]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1807	chr2	160252316	160252317	rs764111946	34639784	Chen TH	2021-10-06	Int J Environ Res Public Health	The Mediation Effects of Aluminum in Plasma and Dipeptidyl Peptidase Like Protein 6 (DPP6) Polymorphism on Renal Function via Genome-Wide Typing Association.	Aluminium levels	494 Han Chinese ancestry individuals	NA	2q24.2		rs764111946-?	NR	8E-8				NR [615681]	N
1807	chr2	160258936	160258937	rs2112115	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	2q24.2	BAZ2B	rs2112115-?	NR	3E-6		0.8207	[0.74-0.9]	Illumina [NR] (imputed)	N
1808	chr2	160326048	160326049	rs4271723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q24.2		rs4271723-T	NR	3E-8		0.0543	[0.035-0.074] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1808	chr2	160345023	160345024	rs62173239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs62173239-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1808	chr2	160357736	160357737	rs536901178	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BAZ2B	rs536901178-?	NR	1E-8		0.882316	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1808	chr2	160374181	160374182	rs1425046	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.2	NR	rs1425046-?	NR	2E-7	(guanosine diphosphate)	0.29624286	[0.18-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1808	chr2	160407484	160407485	rs6751744	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	2q24.2	NR	rs6751744-?	NR	5E-6		2.584	[NR]	Illumina [4196861] (imputed)	N
1808	chr2	160418170	160418171	rs1863219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q24.2	NR	rs1863219-G	0.512267	6E-23		0.018431	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1808	chr2	160422288	160422290	rs376358714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q24.2		rs376358714-C	NR	3E-14		0.0178	[0.013-0.022] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1808	chr2	160422288	160422290	rs376358714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q24.2	BAZ2B	rs376358714-C	0.461033	2E-15		0.017813642	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1808	chr2	160430126	160430127	rs4665083	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2q24.2	NR	rs4665083-A	0.38	2E-9		0.021	[0.013-0.029] z score increase	Affymetrix [up to 10400000] (imputed)	N
1809	chr2	160461477	160461478	rs10195287	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q24.2		rs10195287-T	0.42	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1809	chr2	160461477	160461478	rs10195287	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q24.2	NR	rs10195287-T	0.4221	5E-9				NR [9056863] (imputed)	N
1809	chr2	160462748	160462749	rs12611922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q24.2	BAZ2B	rs12611922-G	0.374421	8E-16		0.019618498	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1809	chr2	160490250	160490251	rs755121215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q24.2		rs755121215-C	NR	2E-8		0.0711	[0.046-0.096] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
1809	chr2	160495225	160495225	rs142992586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q24.2		rs142992586-GA	0.373559	5E-45		0.032271452	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1809	chr2	160504624	160504625	rs13002625	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q24.2		rs13002625-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1809	chr2	160505751	160505752	rs4664293	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q24.2	intergenic	rs4664293-C	0.375	1E-23		0.03685898	[0.03-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1809	chr2	160518289	160518290	rs34435647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q24.2	intergenic	rs34435647-C	0.3783	1E-10		0.02368909	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1809	chr2	160518289	160518290	rs34435647	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q24.2	intergenic	rs34435647-C	0.3783	6E-26		0.038909	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1809	chr2	160521153	160521154	rs201194591	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q24.2		rs201194591-C	0.629	2E-11				Affymetrix [10369434] (imputed)	N
1809	chr2	160521153	160521154	rs201194591	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.2		rs201194591-T	0.370344	7E-12		0.017259672	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1809	chr2	160547090	160547091	rs7597482	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q24.2		rs7597482-A	0.37	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1809	chr2	160552592	160552593	rs11898293	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2q24.2	NR	rs11898293-T	0.508	1E-10		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1809	chr2	160552592	160552593	rs11898293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q24.2		rs11898293-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1809	chr2	160563001	160563002	rs72961726	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC009961.1	rs72961726-?	NR	3E-9		0.940576	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1809	chr2	160563001	160563002	rs72961726	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC009961.1	rs72961726-?	NR	2E-8	(male)	2.2544	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr2	160567229	160567230	rs3821300	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs3821300-C	0.478976	1E-23				Affymetrix, Illumina [23467995] (imputed)	N
1810	chr2	160569275	160569276	rs10173538	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q24.2	MARCH7	rs10173538-C	0.628429	1E-8		0.015115	[0.0099-0.0203] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1810	chr2	160569275	160569276	rs10173538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q24.2	NR	rs10173538-T	0.3737	9E-12		0.02527777	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160569275	160569276	rs10173538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q24.2	NR	rs10173538-T	0.3737	1E-12		0.02625096	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160569275	160569276	rs10173538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q24.2	NR	rs10173538-T	0.3737	2E-12		0.02615576	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160569275	160569276	rs10173538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q24.2	NR	rs10173538-T	0.3737	8E-12		0.02537987	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160570032	160570033	rs4664299	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q24.2	NR	rs4664299-C	0.7651	5E-9		1.0416667	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1810	chr2	160571853	160571854	rs72961741	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MARCH7	rs72961741-?	NR	2E-8	(male)	2.25438	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr2	160576639	160576640	rs182897276	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MARCHF7	rs182897276-?	NR	9E-12		3.48422	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr2	160579577	160579578	rs115125730	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	2q24.2		rs115125730-?	NR	2E-8		2.9686	[1.94-4] unit increase	Affymetrix [NR] (imputed)	N
1810	chr2	160592888	160592889	rs77363656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q24.2		rs77363656-C	0.97	3E-20				Affymetrix [10369434] (imputed)	N
1810	chr2	160592888	160592889	rs77363656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q24.2	MARCH7	rs77363656-T	0.030003	5E-46		0.09402924	[0.081-0.107] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160592888	160592889	rs77363656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q24.2	MARCH7	rs77363656-T	0.0300859999999999	2E-9		0.03892841	[0.026-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160600749	160600750	rs56014508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q24.2		rs56014508-T	NR	8E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1810	chr2	160600749	160600750	rs56014508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q24.2	NR	rs56014508-T	NR	2E-9		0.0148	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1810	chr2	160604513	160604514	rs76774368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.2	MARCH7	rs76774368-T	0.029861	1E-11		0.043840785	[0.031-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160604513	160604514	rs76774368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	MARCH7	rs76774368-T	0.029813	5E-50		0.10136651	[0.088-0.115] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160604540	160604541	rs148440689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q24.2	NR	rs148440689-A	0.024	2E-16		0.09780791	[0.075-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160631379	160631379	rs150458397	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CD302	rs150458397-?	NR	2E-8	(male)	1.13667	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1810	chr2	160646880	160646881	rs6732598	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q24.2		rs6732598-G	0.435	6E-10				Affymetrix [10369434] (imputed)	N
1810	chr2	160662057	160662058	rs2042772	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	2q24.2	LY75-CD302	rs2042772-T	0.254914	3E-6		0.0334	[0.02-0.047] unit decrease	Illumina [1220000] (imputed)	N
1810	chr2	160668542	160668543	rs1549578	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q24.2	LY75	rs1549578-A	0.58	2E-8		5.59	z-score increase	Affymetrix [4314223] (imputed)	N
1810	chr2	160675637	160675638	rs67387640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q24.2		rs67387640-T	NR	3E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	2q24.2	NR	rs12052715-G	0.715256	2E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix [23037915] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q24.2		rs12052715-G	NR	4E-12		0.0147	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q24.2		rs12052715-G	NR	3E-42		0.0324	[0.028-0.037] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs12052715-G	0.725827	4E-54		0.05333306	[0.047-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs12052715-G	0.725674	2E-9		0.015868539	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs12052715-G	0.725648	1E-12		0.018780041	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs12052715-G	0.725773	4E-17		0.021109527	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs12052715-G	0.758983	3E-80				Affymetrix, Illumina [24588908] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q24.2	NR	rs12052715-G	0.722575	3E-73		0.03698	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2q24.2	LY75, LY75-CD302	rs12052715-?	NR	5E-10		0.04834	[0.033-0.064] unit decrease novel	Illumina [6108953] (imputed)	N
1810	chr2	160677374	160677375	rs12052715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q24.2	LY75-CD302, LY75	rs12052715-G	0.7247	3E-17		0.03441657	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160677673	160677674	rs62175230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs62175230-T	0.563791	2E-15		0.017888173	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160677673	160677674	rs62175230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs62175230-C	0.4389	2E-15				Affymetrix, Illumina [17210439] (imputed)	N
1810	chr2	160677673	160677674	rs62175230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q24.2	NR	rs62175230-C	0.436173	1E-18		0.017	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1810	chr2	160678185	160678186	rs4665122	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q24.2		rs4665122-T	NR	2E-35		0.0354	[0.03-0.041] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1810	chr2	160679237	160679238	rs12053269	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q24.2		rs12053269-T	0.48	1E-11				Affymetrix [10369434] (imputed)	N
1810	chr2	160681367	160681367	rs145316090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q24.2		rs145316090-CT	NR	2E-38		0.0389	[0.033-0.045] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1810	chr2	160682107	160682108	rs62175254	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs62175254-A	0.497161	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
1810	chr2	160683523	160683524	rs2955982	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs2955982-A	0.838981	7E-48				Affymetrix, Illumina [23114412] (imputed)	N
1810	chr2	160683523	160683524	rs2955982	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q24.2	LY75-CD302, LY75	rs2955982-A	0.8314	2E-22		0.04763552	[0.038-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q24.2		rs139012450-TATTTTATATAA	NR	4E-14		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q24.2		rs139012450-TATTTTATATAA	NR	7E-16		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q24.2		rs139012450-T	0.504	1E-14		0.09	[-0.11--0.06] % decrease	Affymetrix [NR] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs139012450-TATTTTATATAA	0.492608	3E-14		0.017131131	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs139012450-TATTTTATATAA	0.492616	7E-16		0.0192261	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs139012450-TATTTTATATAA	0.492586	9E-12		0.015592565	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q24.2	NR	rs139012450-I	0.492393	4E-19		0.018126	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1810	chr2	160684717	160684717	rs139012450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q24.2	NR	rs139012450-I	0.492355	4E-17		0.017249	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1810	chr2	160685430	160685431	rs1344632	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q24.2	NR	rs1344632-C	0.518728	9E-15		0.014273	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1810	chr2	160685528	160685529	rs2556094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs2556094-G	0.832618	1E-40		0.040709876	[0.035-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160685528	160685529	rs2556094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs2556094-?	NR	3E-30				NR [~ 8900000] (imputed)	N
1810	chr2	160686160	160686160	rs10674031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q24.2	LY75-CD302, LY75	rs10674031-ATATTT	0.8328	2E-9		0.02900502	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160687060	160687061	rs2556097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q24.2		rs2556097-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1810	chr2	160687060	160687061	rs2556097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q24.2		rs2556097-?	NR	8E-22				NR [~ 8900000] (imputed)	N
1810	chr2	160687230	160687231	rs2729707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs2729707-G	0.832157	4E-14		0.023921393	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1810	chr2	160687230	160687231	rs2729707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs2729707-G	0.845951	7E-42				Affymetrix, Illumina [24649327] (imputed)	N
1810	chr2	160687230	160687231	rs2729707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q24.2	NR	rs2729707-G	0.830063	1E-36		0.030932	[0.026-0.036] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1810	chr2	160687230	160687231	rs2729707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q24.2	NR	rs2729707-G	0.830755	3E-44		0.035655	[0.031-0.041] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1810	chr2	160687524	160687525	rs7573674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs7573674-G	0.847312	3E-16		0.02510262	[0.019-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160688216	160688217	rs113023766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs113023766-C	0.003359	2E-10		0.123897254	[0.086-0.162] unit increase	Affymetrix [93095623] (imputed)	N
1810	chr2	160688350	160688351	rs6755783	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs6755783-T	0.499566	2E-13				Affymetrix, Illumina [20825802] (imputed)	N
1810	chr2	160690645	160690646	rs6722188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.2	CD302	rs6722188-?	NR	9E-7	(betaine)	5.4266634	[3.26-7.59] unit increase	Affymetrix [at least 2500000] (imputed)	N
1810	chr2	160690655	160690656	rs78446341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs78446341-A	0.0195353	4E-13				Affymetrix, Illumina [24332387] (imputed)	N
1810	chr2	160690655	160690656	rs78446341	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q24.2	LY75-CD302, LY75	rs78446341-A	0.0234	4E-29		0.1351774	[0.11-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1810	chr2	160692460	160692461	rs6750782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs6750782-T	0.706903	2E-12		0.024070963	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr2	160695314	160695315	rs59476292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs59476292-A	0.080071	7E-28		0.04717061	[0.039-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1811	chr2	160696241	160696242	rs11896565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q24.2		rs11896565-T	0.447235	4E-9		0.0117963	[0.0079-0.0157] unit decrease	Illumina [13479295] (imputed)	N
1811	chr2	160698699	160698700	rs41265133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs41265133-A	0.3617	2E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1811	chr2	160705484	160705485	rs12469306	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	2q24.2	NR	rs12469306-A	0.180633	6E-15		0.038133	[0.029-0.048] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
1811	chr2	160705484	160705485	rs12469306	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	2q24.2	LY75, LY75-CD302	rs12469306-?	NR	3E-9		0.0459	[0.031-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
1811	chr2	160706543	160706544	rs78685880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q24.2		rs78685880-G	0.027057	9E-23		0.101837	[0.082-0.122] unit increase	Illumina [13478928] (imputed)	N
1811	chr2	160706543	160706544	rs78685880	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	2q24.2	LY75, LY75-CD302	rs78685880-?	NR	7E-16		0.1177	[0.089-0.146] unit increase novel	Illumina [6108953] (imputed)	N
1811	chr2	160707074	160707075	rs41264207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs41264207-T	0.079946	3E-10		0.027438728	[0.019-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr2	160707074	160707075	rs41264207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs41264207-T	0.079939	3E-11		0.02845311	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr2	160708049	160708050	rs60200364	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	2q24.2	BAZ2B, LY75, LY75-CD302, PLA2R1, ITGB6	rs60200364-A	0.0623	2E-6		0.0555	NR unit increase	NR [NR] (imputed)	N
1811	chr2	160708644	160708645	rs2162500	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Urokinase plasminogen activator surface receptor levels	21,758 European ancestry individuals	9,173 individuals	2q24.2		rs2162500-C	0.46	8E-29		0.0889	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1811	chr2	160714614	160714615	rs10929956	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	2q24.2	LY75	rs10929956-C	0.54	2E-6	(EIM Erythema nodosum)	1.85	[1.43-2.44]	Illumina [539846]	N
1811	chr2	160714957	160714958	rs114821641	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	2q24.2		rs114821641-?	NR	8E-19		0.174776	[0.14-0.21] unit increase	NR [9800000] (imputed)	N
1811	chr2	160714957	160714958	rs114821641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs114821641-T	0.00225600000000004	4E-22		0.22979593	[0.18-0.28] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr2	160714957	160714958	rs114821641	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs114821641-T	0.00225699999999995	3E-11		0.15759479	[0.11-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1811	chr2	160725410	160725411	rs56186131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.2	LY75, LY75-CD302	rs56186131-A	NR	2E-9		0.016858	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr2	160725410	160725411	rs56186131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.2	LY75, LY75-CD302	rs56186131-A	NR	2E-9		0.0169525	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1811	chr2	160725410	160725411	rs56186131	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.2	LY75, LY75-CD302	rs56186131-A	NR	4E-8		0.0155584	[0.01-0.0211] unit decrease	Affymetrix [321114] (imputed)	N
1811	chr2	160728900	160728901	rs183018167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	LY75	rs183018167-G	0.011714	1E-12		0.07516756	[0.054-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1811	chr2	160743792	160743793	rs12692572	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2q24.2	NR	rs12692572-?	NR	4E-9		0.02491	[0.017-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1811	chr2	160754946	160754947	rs76840964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q24.2	LY75, LY75-CD302	rs76840964-G	0.123301	3E-19		0.031110551	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1811	chr2	160754946	160754947	rs76840964	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q24.2	LY75, LY75-CD302	rs76840964-G	0.1249	4E-10		0.03454823	[0.024-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1811	chr2	160756344	160756345	rs7595388	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2R1	5,364 Icelandic ancestry individuals	NA	2q24.2		rs7595388-G	0.474	3E-214		0.533887	[0.5-0.57] unit increase	Illumina [7506463] (imputed)	N
1811	chr2	160769587	160769588	rs6735923	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	2q24.2	NR	rs6735923-?	NR	2E-11		0.02818	[0.02-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1811	chr2	160781240	160781241	rs35052883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q24.2		rs35052883-T	0.553679	7E-15		0.0267003	[0.02-0.033] unit decrease	Illumina [13479091] (imputed)	N
1811	chr2	160781240	160781241	rs35052883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	2q24.2		rs35052883-T	0.558318	1E-12		0.0333324	[0.024-0.043] unit decrease	Illumina [13467171] (imputed)	N
1811	chr2	160781240	160781241	rs35052883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q24.2		rs35052883-T	0.391465	1E-17		0.019668793	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1811	chr2	160794007	160794008	rs4664304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q24.2		rs4664304-G	0.343038	2E-8		0.0259858	[0.017-0.035] unit increase	Illumina [13471440] (imputed)	N
1811	chr2	160794007	160794008	rs4664304	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q24.2	MARCH7, LY75, PLA2R1	rs4664304-A	0.4379	3E-8	(EA)	1.0576227	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1811	chr2	160794007	160794008	rs4664304	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q24.2	MARCH7, LY75, PLA2R1	rs4664304-A	0.4379	1E-6	(EA)	1.0610188	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1812	chr2	160828013	160828014	rs56159337	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q24.2	NR	rs56159337-A	0.461	5E-200	(Secretory phospholipase A2 receptor, PLA2R1.10916.44.3)	0.68	[0.64-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
1812	chr2	160832858	160832858	rs145272880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.2	PLA2R1	rs145272880-AAC	NR	3E-9		0.0167623	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1812	chr2	160832858	160832858	rs145272880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.2	PLA2R1	rs145272880-AAC	NR	5E-9		0.0164854	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1812	chr2	160836623	160836624	rs146328612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q24.2	PLA2R1	rs146328612-A	0.013136	1E-9		0.061088357	[0.041-0.081] unit decrease	Affymetrix [93095623] (imputed)	N
1812	chr2	160856939	160856940	rs544467681	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q24.2	PLA2R1	rs544467681-C	0.00253000000000003	3E-17		0.19195628	[0.15-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1812	chr2	160862093	160862094	rs2667004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	2q24.2	NR	rs2667004-G	0.369985	2E-12		0.026592	[0.019-0.034] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1812	chr2	160867058	160867059	rs2667011	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q24.2	PLA2R1	rs2667011-?	0.248	2E-13		0.038	[NR] bilirubin level decrease	Affymetrix [1227049] (imputed)	N
1812	chr2	160877168	160877169	rs116708930	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	2q24.2		rs116708930-?	NR	5E-9		3.1571	[2.1-4.21] unit increase	Affymetrix [NR] (imputed)	N
1812	chr2	160878363	160878364	rs17830558	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2q24.2		rs17830558-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1812	chr2	160878363	160878364	rs17830558	27333618	Sekula P	2016-02-04	Nephrol Dial Transplant	Genetic risk variants for membranous nephropathy: extension of and association with other chronic kidney disease aetiologies.	Membranous nephropathy	323 European ancestry cases, 345 European ancestry controls	137 European ancestry cases, 379 European ancestry controls	2q24.2	PLA2R1	rs17830558-T	0.52	4E-10		1.87	[1.54-2.28]	Illumina [8968426] (imputed)	N
1812	chr2	160882065	160882066	rs55668231	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2R1	5,364 Icelandic ancestry individuals	NA	2q24.2		rs55668231-A	0.4542	1E-287		0.604852	[0.57-0.64] unit increase	Illumina [7506463] (imputed)	N
1812	chr2	160883935	160883936	rs3792188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q24.2		rs3792188-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1812	chr2	160885441	160885442	rs3749117	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q24.2	PLA2R1	rs3749117-C	0.501	6E-500	(Secretory phospholipase A2 receptor, PLA2R1.10916.44.3)	0.9	[0.86-0.94] unit decrease	Affymetrix [10572788] (imputed)	N
1812	chr2	160890794	160890795	rs4665141	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q24.2	PLA2R1	rs4665141-A	0.44703125	3E-158	(PLA2R1, 10916_44_3)	0.6260721	[0.58-0.67] unit increase	Illumina [> 1000000] (imputed)	N
1812	chr2	160914155	160914156	rs17831251	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls, 1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	826 Chinese ancestry cases, 1,239 Chinese ancestry controls	2q24.2	PLA2R1	rs17831251-C	NR	5E-103		2.25	[2.09-2.42]	Illumina [~ 7000000] (imputed)	N
1812	chr2	160914155	160914156	rs17831251	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	2,150 European ancestry cases, 5,829 European ancestry controls	NA	2q24.2	PLA2R1	rs17831251-C	0.61	5E-48		1.98	[1.81-2.17]	Illumina [~ 7000000] (imputed)	N
1812	chr2	160914155	160914156	rs17831251	32231244	Xie J	2020-03-30	Nat Commun	The genetic architecture of membranous nephropathy and its potential to improve non-invasive diagnosis.	Membranous nephropathy	1,612 East Asian ancestry cases, 1,970 East Asian ancestry controls	NA	2q24.2	PLA2R1	rs17831251-C	0.7	4E-61		2.81	[2.48-3.17]	Illumina [~ 7000000] (imputed)	N
1812	chr2	160914548	160914549	rs11901391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q24.2		rs11901391-C	NR	8E-9		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1812	chr2	160917496	160917497	rs4664308	21323541	Stanescu HC	2011-02-22	N Engl J Med	Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy.	Idiopathic membranous nephropathy	556 European ancestry cases, 2,338 European ancestry controls	NA	2q24.2	LY75, ITGB6, PLA2R1, RBMS1	rs4664308-A	0.43	9E-29		2.28	[1.96-2.64]	Illumina [242824]	N
1812	chr2	160950111	160950112	rs13432522	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q24.2	NR	rs13432522-?		8E-6				Illumina [4322238] (imputed)	N
1813	chr2	160957625	160957626	rs4076844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs4076844-T	0.292861	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
1813	chr2	160957625	160957626	rs4076844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q24.2	NR	rs4076844-T	0.236678	8E-11		0.014103	[0.0099-0.0184] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1813	chr2	160957823	160957824	rs4470295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q24.2	ITGB6	rs4470295-G	0.236282	4E-10		0.016206952	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1813	chr2	160957823	160957824	rs4470295	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q24.2	ITGB6	rs4470295-G	0.236313	7E-10		0.015996283	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1813	chr2	160960057	160960058	rs4233681	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q24.2	ITGB6	rs4233681-?	0.478	2E-11		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1813	chr2	160967268	160967269	rs4665156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q24.2		rs4665156-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1813	chr2	160970734	160970735	rs16844802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q24.2		rs16844802-T	NR	4E-8		0.012	[0.0077-0.0163] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1813	chr2	160989485	160989486	rs2124969	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.2	ITGB6	rs2124969-T	0.5777	7E-9	(EA)	0.0199	[0.013-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1813	chr2	160989485	160989486	rs2124969	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.2	ITGB6	rs2124969-T	0.5777	2E-7	(EA, men)	0.0247	[0.015-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1813	chr2	161016775	161016776	rs2925763	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.2	NR	rs2925763-?	NR	2E-31				Affymetrix [NR]	N
1813	chr2	161059807	161059808	rs3101041	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q24.2	ITGB6	rs3101041-A	0.7304	3E-10		0.0135	[0.0094-0.0176] unit decrease	Affymetrix [18391927] (imputed)	N
1813	chr2	161083805	161083806	rs55659339	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC092153.1	rs55659339-?	NR	7E-12		1.8539	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1813	chr2	161083805	161083806	rs55659339	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC092153.1	rs55659339-?	NR	5E-10	(male)	2.09289	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1813	chr2	161086737	161086738	rs34091862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q24.2	ITGB6	rs34091862-C	0.227463	4E-9		0.015632968	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1814	chr2	161089916	161089917	rs62175437	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q24.2	NR	rs62175437-A	0.4	6E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
1814	chr2	161101561	161101562	rs1457231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q24.2	LINC02478	rs1457231-T	0.7047	3E-8		0.0192	[0.012-0.026] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1814	chr2	161101561	161101562	rs1457231	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q24.2	LINC02478	rs1457231-T	0.6833	1E-6		0.019952	[0.012-0.028] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1814	chr2	161105875	161105876	rs10803762	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.2	NR	rs10803762-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1814	chr2	161105875	161105876	rs10803762	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.2		rs10803762-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1814	chr2	161109701	161109702	rs72623120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q24.2		rs72623120-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1814	chr2	161131693	161131694	rs1563575	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	2q24.2	RBMS1	rs1563575-A	NR	6E-8		1.100759		Affymetrix, Illumina [~ 13000000] (imputed)	N
1814	chr2	161135543	161135544	rs3772071	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q24.2	RBMS1	rs3772071-T	0.7135	1E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1814	chr2	161136655	161136656	rs7572970	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q24.2	RBMS1	rs7572970-A	0.277953371585924	1E-11		0.059	[0.042-0.076] unit decrease	NR [5035015] (imputed)	N
1814	chr2	161144054	161144055	rs1020731	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.2	NA	rs1020731-A	0.7021	6E-11		0.0127	[0.009-0.0164] unit increase	NR [~ 27400000] (imputed)	N
1814	chr2	161145611	161145612	rs6432613	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q24.2	NR	rs6432613-G	0.7236	7E-14		0.0393	[0.029-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1814	chr2	161159319	161159319	rs71003484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2q24.2		rs71003484-CA	NR	8E-9		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1814	chr2	161171453	161171454	rs7593730	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q24.2	RBMS1	rs7593730-C	NR	2E-6		1.11	[1.06-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1814	chr2	161171453	161171454	rs7593730	20418489	Qi L	2010-04-23	Hum Mol Genet	Genetic variants at 2q24 are associated with susceptibility to type 2 diabetes.	Type 2 diabetes	2,591 European ancestry cases, 3,052 European ancestry controls	10,870 European ancestry cases, 73,735 European ancestry controls	2q24.2	ITGB6, RBMS1	rs7593730-?	0.78	4E-8		1.11	[1.08-1.16]	Affymetrix [683509]	N
1814	chr2	161174484	161174485	rs148076191	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	NR	rs148076191-?	NR	1E-6		4.88	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1814	chr2	161203394	161203395	rs7425274	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q24.2		rs7425274-C	0.45	7E-11		6.53	z score increase	Affymetrix [9061022] (imputed)	N
1814	chr2	161203394	161203395	rs7425274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q24.2		rs7425274-C	NR	5E-15		0.01	[0.0075-0.0125] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1814	chr2	161203394	161203395	rs7425274	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.2	RBMS1	rs7425274-C	NR	8E-12		0.0193527	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1814	chr2	161203394	161203395	rs7425274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.2		rs7425274-?	NR	5E-16				NR [~ 8900000] (imputed)	N
1815	chr2	161234658	161234659	rs201958855	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.2	RBMS1	rs201958855-G	NR	5E-10		0.0191045	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1815	chr2	161235980	161235981	rs13397529	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs13397529-C	0.2363	7E-9		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1815	chr2	161237483	161237484	rs140902008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q24.2		rs140902008-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1815	chr2	161240217	161240218	rs75428193	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q24.2	Intergenic	rs75428193-?		6E-7		1.11	[1.07-1.16]	Illumina [7645193] (imputed)	N
1815	chr2	161242294	161242295	rs12998587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q24.2		rs12998587-C	NR	3E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1815	chr2	161257806	161257807	rs535672935	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q24.2	RBMS1	rs535672935-T	0.9979	9E-6		0.4243	[0.24-0.61] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q24.2	RBMS1	rs12692596-C	0.62759	2E-8		0.0119251	[0.0078-0.0161] unit increase	NR [16516521] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.2	RBMS1	rs12692596-T	NR	3E-9		0.0172193	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.2	NR	rs12692596-T	NR	3E-12		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q24.2	RBMS1	rs12692596-C	0.628118	8E-9		0.00815579	[0.0054-0.0109] unit decrease	Affymetrix [12370749]	N
1815	chr2	161265909	161265910	rs12692596	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q24.2	RBMS1	rs12692596-C	0.627892	1E-8		0.0111672	[0.0073-0.015] unit increase	Affymetrix [NR] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.2	NR	rs12692596-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q24.2	NA	rs12692596-T	0.3618	1E-12		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1815	chr2	161265909	161265910	rs12692596	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q24.2	NA	rs12692596-T	0.3618	1E-12		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1815	chr2	161269545	161269546	rs10165387	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.2	RBMS1	rs10165387-T	NR	8E-11		0.0226121	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1815	chr2	161271210	161271211	rs62177350	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.2	NR	rs62177350-C	0.109	3E-10		0.0109507	[0.0076-0.0143] unit decrease	NR [9732723] (imputed)	N
1815	chr2	161276377	161276378	rs7424771	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q24.2	RBMS1	rs7424771-G	0.556491	2E-10		0.00893011	[0.0062-0.0117] unit increase	Affymetrix [12370749]	N
1815	chr2	161276377	161276378	rs7424771	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q24.2	RBMS1	rs7424771-A	0.4468	3E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1815	chr2	161276377	161276378	rs7424771	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q24.2	RBMS1	rs7424771-A	0.4468	2E-7		0.0123	[0.0076-0.017] unit decrease	Affymetrix [19819130] (imputed)	N
1815	chr2	161276377	161276378	rs7424771	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q24.2	RBMS1	rs7424771-A	0.4468	7E-13		0.0169	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1815	chr2	161276377	161276378	rs7424771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs7424771-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1815	chr2	161277643	161277644	rs12463865	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	2q24.2	RBMS1	rs12463865-T	0.47	6E-7		0.159	[0.096-0.222] unit increase	Illumina [6380737] (imputed)	N
1815	chr2	161280887	161280888	rs6746841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q24.2	RBMS1	rs6746841-A	0.747124	1E-18		0.022727732	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161280887	161280888	rs6746841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q24.2	RBMS1	rs6746841-A	0.747144	7E-31		0.029739955	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1815	chr2	161281523	161281524	rs6432615	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q24.2		rs6432615-C	0.2	9E-27				Affymetrix [10369434] (imputed)	N
1815	chr2	161283397	161283398	rs62177354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.2		rs62177354-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1815	chr2	161290336	161290337	rs62177359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs62177359-A	0.9653	7E-13		0.0275	[0.02-0.035] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1815	chr2	161299701	161299702	rs7424278	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2q24.2		rs7424278-G	0.801	1E-18				Affymetrix [10369434] (imputed)	N
1815	chr2	161299701	161299702	rs7424278	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q24.2		rs7424278-G	0.801	1E-20				Affymetrix [10369434] (imputed)	N
1815	chr2	161300973	161300974	rs62179061	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs62179061-T	0.9653	3E-15	(MTAG)	0.0283	[0.021-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1815	chr2	161305017	161305018	rs10174570	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q24.2	BAZ2B, PLA2R1, RBMS1	rs10174570-?		8E-10				Affymetrix, Illumina [NR] (imputed)	N
1815	chr2	161306827	161306828	rs113678689	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q24.2	NR	rs113678689-C	0.18	4E-7	(IFNalpha_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1815	chr2	161306827	161306828	rs113678689	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q24.2	RBMS1	rs113678689-C	0.199	4E-22		0.04354005	[0.035-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1815	chr2	161329364	161329365	rs10172311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.2	RBMS1	rs10172311-T	NR	5E-9		0.016385	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1815	chr2	161329364	161329365	rs10172311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q24.2	RBMS1	rs10172311-T	0.46582	8E-14		0.016729105	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161329364	161329365	rs10172311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q24.2	RBMS1	rs10172311-T	0.465823	1E-16		0.018535582	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161329364	161329365	rs10172311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q24.2	RBMS1	rs10172311-T	0.465827	6E-14		0.016715903	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161329364	161329365	rs10172311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q24.2	RBMS1	rs10172311-T	0.465839	9E-17		0.01851548	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161330939	161330940	rs10173412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q24.2		rs10173412-C	NR	1E-46		0.0398	[0.034-0.045] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1815	chr2	161330939	161330940	rs10173412	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q24.2		rs10173412-T	0.799	7E-29				Affymetrix [10369434] (imputed)	N
1815	chr2	161330939	161330940	rs10173412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q24.2	RBMS1	rs10173412-C	0.201023	3E-56		0.04339487	[0.038-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161330939	161330940	rs10173412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs10173412-C	0.186167	2E-61				Affymetrix, Illumina [23472807] (imputed)	N
1815	chr2	161330939	161330940	rs10173412	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q24.2	NR	rs10173412-C	0.200755	1E-62		0.039278	[0.035-0.044] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1815	chr2	161331080	161331081	rs10208158	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.2	NR	rs10208158-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1815	chr2	161333127	161333128	rs4664330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q24.2	RBMS1	rs4664330-C	0.316037	5E-16		0.019347213	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161333127	161333128	rs4664330	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q24.2	RBMS1	rs4664330-C	0.3146	3E-10		0.02421946	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1815	chr2	161333871	161333872	rs6710938	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q24.2	NR	rs6710938-C	0.228	2E-13		0.0342	[0.025-0.043] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1815	chr2	161334554	161334555	rs115278162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs115278162-T	0.9775	1E-9	(conditional-joint)	0.0288	[0.02-0.038] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1815	chr2	161336405	161336406	rs10178094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.2	RBMS1	rs10178094-A	NR	5E-9		0.0166149	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1815	chr2	161336405	161336406	rs10178094	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.2	RBMS1	rs10178094-A	0.466846	3E-22		0.021569248	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161336405	161336406	rs10178094	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q24.2		rs10178094-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1815	chr2	161336405	161336406	rs10178094	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q24.2	RBMS1	rs10178094-A	0.4675	4E-9		0.02114093	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1815	chr2	161340111	161340112	rs6722159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.2	RBMS1	rs6722159-A	0.488798	4E-13		0.016098334	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1815	chr2	161340111	161340112	rs6722159	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q24.2	RBMS1	rs6722159-T	0.51	3E-8		0.0109794	[0.0071-0.0149] unit increase	Affymetrix [NR] (imputed)	N
1815	chr2	161340111	161340112	rs6722159	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2q24.2	NR	rs6722159-A	0.4828	5E-8		0.0099	[0.0064-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
1815	chr2	161340269	161340270	rs6432622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q24.2		rs6432622-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1815	chr2	161340422	161340423	rs5835809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q24.2		rs5835809-G	NR	6E-9		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1815	chr2	161340499	161340500	rs7419612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q24.2	RBMS1	rs7419612-A	0.19	4E-12		0.03174877	[0.023-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1815	chr2	161344061	161344062	rs7423572	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs7423572-C	NR	1E-8		5.669	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1816	chr2	161356131	161356132	rs6724036	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q24.2	RBMS1	rs6724036-C	NR	9E-9		0.0200018	[0.013-0.027] unit decrease	Affymetrix [323858] (imputed)	N
1816	chr2	161356294	161356295	rs62175970	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	NR	rs62175970-?	NR	5E-8		5.45	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1816	chr2	161356716	161356717	rs7563677	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2q24.2	RBMS1	rs7563677-G	0.107592	5E-8		1.0752687	[1.04-1.1]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1816	chr2	161362829	161362830	rs62175972	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q24.2		rs62175972-T	0.966	2E-8		0.031	[0.019-0.043] unit increase	Affymetrix [up to 90000000] (imputed)	N
1816	chr2	161362829	161362830	rs62175972	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	RBMS1	rs62175972-T	NR	4E-8		0.04675039	[0.03-0.063] unit decrease	Affymetrix [NR]	N
1816	chr2	161368212	161368213	rs79523138	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q24.2	RBMS1	rs79523138-A	0.8849	4E-11		0.2629	[0.18-0.34] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	2q24.2	intergenic	rs10192369-G	0.38	3E-6	(male)	0.212	[0.12-0.3] unit increase	Illumina [6380737] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	2q24.2	intergenic	rs10192369-G	0.38	5E-6	(male)	1.12	[0.65-1.59] unit increase	Illumina [6380737] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs10192369-A	0.5049	7E-13	(MTAG)	0.0128	[0.0093-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.2	Intergenic	rs10192369-G	0.4951	9E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs10192369-A	0.5038	6E-16	(MTAG)	0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs10192369-A	0.496	2E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs10192369-A	NR	5E-9		5.85	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1816	chr2	161380887	161380888	rs10192369	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	RBMS1	rs10192369-A	NR	4E-9		0.017210523	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1816	chr2	161380887	161380888	rs10192369	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2q24.2	RBMS1	rs10192369-T	0.47	9E-6	(susceptibilty)	1.17	[NR]	Illumina [288357]	N
1816	chr2	161384958	161384959	rs6432627	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.2	Intergenic	rs6432627-G	0.3768	2E-11		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1816	chr2	161385290	161385291	rs7419274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs7419274-T	0.2111	5E-12	(MTAG)	0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1816	chr2	161385290	161385291	rs7419274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.2	Intergenic	rs7419274-T	0.2111	5E-8		0.0191	[0.012-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1817	chr2	161490129	161490130	rs4455170	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2q24.2	NR	rs4455170-T	0.2843	5E-7		0.0066	[0.0041-0.0091] unit increase	NR [7666894] (imputed)	N
1817	chr2	161501420	161501421	rs79932649	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q24.2	NR	rs79932649-G	0.0649	4E-9		0.0183902	[0.012-0.025] unit decrease	NR [9732723] (imputed)	N
1817	chr2	161505156	161505157	rs75899245	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs75899245-A	0.932	2E-8	(MTAG)	0.0257	[0.017-0.035] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1817	chr2	161515982	161515983	rs4664346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs4664346-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1817	chr2	161544890	161544891	rs13407215	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	2q24.2	AHCTF1P1, BAZ2B, CD302, DPP4, ITGB6, LOC643072, LOC100505984, LOC100996579, LOC101929512, LY75, LY75-CD302, MARCH7, MIR4785, PLA2R1, PSMD14, RBMS1, SLC4A10, TANC1, TANK, TBR1, WDSUB1	rs13407215-T	0.017	2E-7		2.2106795		Illumina [8265319] (imputed)	N
1817	chr2	161547696	161547697	rs6752228	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs6752228-T	0.5523	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1817	chr2	161570980	161570981	rs10497215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.2	Intergenic	rs10497215-T	0.4504	4E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1817	chr2	161570980	161570981	rs10497215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs10497215-T	0.4513	6E-15	(MTAG)	0.0129	[0.0096-0.0162] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1817	chr2	161570980	161570981	rs10497215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs10497215-T	0.4598	6E-11	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1817	chr2	161572780	161572781	rs6732189	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs6732189-A	0.5497	2E-13	(MTAG)	0.0132	[0.0097-0.0167] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1817	chr2	161572780	161572781	rs6732189	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q24.2	intergenic	rs6732189-A	0.526	8E-8		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1817	chr2	161580891	161580892	rs113055309	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Weight	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	2q24.2	RBMS1, TANK	rs113055309-?	NR	3E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1818	chr2	161628982	161628983	rs146071273	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q24.2	NR	rs146071273-A	0.0867	7E-6	(EA)	0.052	[0.029-0.075] unit decrease	Illumina [~ 11800000] (imputed)	N
1818	chr2	161652288	161652289	rs480407	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2q24.2	Intergenic	rs480407-G	NR	1E-6		0.0177077	[0.011-0.025] unit decrease	Illumina [13519193] (imputed)	N
1818	chr2	161714728	161714729	rs270960	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.2		rs270960-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1818	chr2	161716786	161716787	rs74728841	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	NR	rs74728841-?	NR	7E-6		4.498	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1818	chr2	161732533	161732534	rs634138	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q24.2	intergenic	rs634138-G	0.08	5E-9	(AA)	6.1	[4.85-7.35]	Illumina [905956]	N
1819	chr2	161757128	161757129	rs10208407	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.2	TANK	rs10208407-A	0.0080	2E-6	(Vigorous activity )	0.03	[NR] %awake time increase	Illumina [899892]	N
1819	chr2	161758352	161758353	rs12986586	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2q24.2	Intergenic	rs12986586-C	NR	2E-6		0.0174424	[0.01-0.025] unit decrease	Illumina [13519193] (imputed)	N
1819	chr2	161760919	161760920	rs17221725	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs17221725-T	NR	1E-8		5.702	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1819	chr2	161781772	161781773	rs1722636	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q24.2	TANK	rs1722636-T	0.23	6E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1819	chr2	161784213	161784214	rs16845318	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	2q24.2	NR	rs16845318-T	0.064	5E-6		0.233	[0.13-0.33] unit increase	Illumina [up to 730525]	N
1819	chr2	161785168	161785169	rs1829975	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	2q24.2	TANK	rs1829975-?	NR	6E-6	(AG vs. not AG)			Illumina [856627]	N
1819	chr2	161808689	161808690	rs79997166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs79997166-A	0.9375	7E-9		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1819	chr2	161812351	161812352	rs114952970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs114952970-T	0.0325	4E-11		0.0265	[0.019-0.034] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1819	chr2	161812351	161812352	rs114952970	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	RN7SL423P	rs114952970-T	NR	4E-8		0.051299606	[0.033-0.07] unit increase	Affymetrix [NR]	N
1819	chr2	161816879	161816880	rs1722666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.2	NR	rs1722666-T	0.732	2E-11		0.0081922	[0.0058-0.0106] unit increase	NR [9732723] (imputed)	N
1819	chr2	161816879	161816880	rs1722666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.2	NR	rs1722666-T	0.732	2E-8	(Conditioned on chr2:162101261, chr2:162802993)	0.016093217	[0.01-0.022] unit increase	NR [~ 10000000] (imputed)	N
1819	chr2	161842447	161842448	rs2048830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs2048830-T	0.4097	1E-12	(MTAG)	0.0096	[0.0071-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1819	chr2	161854735	161854736	rs10930008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs10930008-A	0.7399	8E-9	(conditional-joint)	0.0094	[0.0063-0.0125] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1819	chr2	161854735	161854736	rs10930008	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q24.2	NR	rs10930008-A	0.7343	4E-8		0.013825558	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1819	chr2	161859759	161859760	rs6760887	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs6760887-T	0.2447	1E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1819	chr2	161865900	161865901	rs11897383	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs11897383-T	0.2146	5E-9	(MTAG)	0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1819	chr2	161866503	161866504	rs62194170	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs62194170-A	0.2025	2E-10		0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1819	chr2	161866503	161866504	rs62194170	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs62194170-A	0.2015	5E-8	(MTAG)	0.0156	[0.0099-0.0213] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1820	chr2	161877175	161877176	rs6715073	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs6715073-T	NR	2E-8		5.619	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1820	chr2	161877175	161877176	rs6715073	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	ENSG00000232337	rs6715073-T	NR	5E-9		0.018271755	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1820	chr2	161879615	161879616	rs6723841	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q24.2	ENSG00000232337	rs6723841-?	NR	1E-10		0.013711477	[0.0095-0.0179] unit decrease	NR [7306098]	N
1820	chr2	161886102	161886103	rs2357982	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	2q24.2	TANK	rs2357982-?	0.3885	3E-6	(anti-B2 GPI)	2.189	[NR]	Affymetrix [906600]	N
1820	chr2	161894662	161894663	rs197273	27911795	Schumann G	2016-11-28	Proc Natl Acad Sci U S A	KLB is associated with alcohol drinking, and its gene product ?-Klotho is necessary for FGF21 regulation of alcohol preference.	Alcohol consumption	up to 70,460 European ancestry drinker individuals	up to 35,438 European ancestry drinker individuals	2q24.2	TANK	rs197273-A	0.49	7E-8		0.0103	[0.0066-0.0140] unit decrease	Affymetrix, Illumina, Perlegen [at least 316407] (imputed)	N
1820	chr2	161894662	161894663	rs197273	23372041	Chu AY	2013-01-30	Hum Mol Genet	Novel locus including FGF21 is associated with dietary macronutrient intake.	Dietary macronutrient intake	33,533 European ancestry individuuals	38,360 European ancestry individuuals	2q24.2	TANK	rs197273-A	0.48	1E-7	(Carbohydrates - model 2)	0.23	[0.15-0.31] percent increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1820	chr2	161901300	161901301	rs4664395	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	2q24.2		rs4664395-?	NR	5E-9				NR [9705931] (imputed)	N
1820	chr2	161902066	161902067	rs10930011	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	ENSG00000232337	rs10930011-A	NR	3E-8		0.016860727	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1820	chr2	161904822	161904823	rs197261	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	2q24.2	NR	rs197261-?		7E-9				NR [520857]	N
1820	chr2	161908277	161908278	rs62194185	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	ENSG00000232337	rs62194185-T	NR	2E-8		5.653	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1820	chr2	161915809	161915810	rs7579662	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q24.2		rs7579662-A	0.3919	2E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1820	chr2	161916408	161916409	rs747003	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q24.2	RBMS1, TANK	rs747003-T	0.6088	3E-8		1.0197934		Affymetrix [11880941] (imputed)	N
1820	chr2	161920883	161920884	rs16845580	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q24.2		rs16845580-T	0.6306	5E-10		49.25983	z score increase	NR [6814003]	N
1820	chr2	161920883	161920884	rs16845580	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q24.2	NR	rs16845580-T	0.6283	4E-12		0.01593895	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1820	chr2	161923519	161923520	rs7586673	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	ENSG00000232337	rs7586673-A	NR	3E-10		0.019124921	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1820	chr2	161935423	161935424	rs17755617	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q24.2		rs17755617-A	0.29	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1820	chr2	161942910	161942911	rs1991110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs1991110-T	0.8862	4E-13	(MTAG)	0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1820	chr2	161942910	161942911	rs1991110	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs1991110-T	0.8878	5E-13	(MTAG)	0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1820	chr2	161960924	161960925	rs7591506	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs7591506-T	NR	4E-10		6.255	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1820	chr2	161975200	161975201	rs78760431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs78760431-A	0.986	1E-8	(MTAG)	0.0436	[0.029-0.058] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1820	chr2	161988099	161988100	rs7586242	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.2	PSMD14	rs7586242-?	NR	6E-7	(hypoxanthine)	0.46045327	[0.28-0.64] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1820	chr2	161988322	161988323	rs7586644	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.2	PSMD14	rs7586644-?	NR	6E-7	(hypoxanthine)	0.46045327	[0.28-0.64] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1820	chr2	161994382	161994383	rs3769983	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q24.2		rs3769983-G	0.521	2E-17		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1820	chr2	161994382	161994383	rs3769983	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q24.2	AC009313.1, TANK	rs3769983-A	0.4874	3E-9		0.012045813	[0.0081-0.016] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1820	chr2	161994382	161994383	rs3769983	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2q24.2	AC009313.1	rs3769983-G	0.52	6E-6		0.75	[0.42-1.08] g/day increase	Affymetrix [10353649] (imputed)	N
1820	chr2	162000265	162000266	rs1267062	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs1267062-C	0.1781	7E-10		0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1821	chr2	162012134	162012135	rs1267068	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q24.2	TANK	rs1267068-T	0.6973	4E-10		0.013688575	[0.0094-0.018] unit increase	Affymetrix [11514654] (imputed)	N
1821	chr2	162028884	162028885	rs7568273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q24.2		rs7568273-G	NR	1E-8		0.076	[0.05-0.102] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1821	chr2	162029112	162029113	rs7568498	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2q24.2	TANK	rs7568498-?		2E-8	(Hispanic)		[NR]	Illumina [936149]	N
1821	chr2	162059968	162059969	rs11884495	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	TANK	rs11884495-A	NR	2E-9		6.009	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1821	chr2	162070324	162070325	rs10930013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q24.2		rs10930013-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1821	chr2	162070324	162070325	rs10930013	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	2q24.2	TANK	rs10930013-A	0.475	3E-8		5.55	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
1821	chr2	162091835	162091836	rs3754970	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q24.2	TANK, PSMD14, TBR1	rs3754970-?		1E-9				NR [7428630] (imputed)	N
1821	chr2	162091835	162091836	rs3754970	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q24.2	NR	rs3754970-?		5E-12		0.014997	[0.011-0.019] unit decrease	Affymetrix [19400418] (imputed)	N
1821	chr2	162091835	162091836	rs3754970	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs3754970-T	NR	3E-13		7.312	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1821	chr2	162092639	162092640	rs7309	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs7309-A	0.4861	2E-33	(conditional-joint)	0.0172	[0.014-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1821	chr2	162092639	162092640	rs7309	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	ENSG00000235724	rs7309-A	NR	3E-17		0.02465055	[0.019-0.03] unit decrease	Affymetrix [NR]	N
1821	chr2	162092639	162092640	rs7309	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q24.2	ENSG00000235724	rs7309-?	NR	9E-11		6.491	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1821	chr2	162092639	162092640	rs7309	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q24.2	TANK, PSMD14, TBR1	rs7309-A	0.491	2E-7		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1821	chr2	162092639	162092640	rs7309	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment (years of education)	up to 126,559 European ancestry individuals	NA	2q24.2	TANK	rs7309-A	0.476	4E-8		0.088	[NR] unit decrease	Affymetrix, Illumina, Perlegen [up to 23218963] (imputed)	N
1821	chr2	162095002	162095003	rs1267042	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2q24.2		rs1267042-?	NR	2E-13		0.0214	unit increase	NR [NR]	N
1821	chr2	162095002	162095003	rs1267042	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs1267042-T	NR	3E-8		5.52	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1821	chr2	162098154	162098155	rs1267037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	2q24.2		rs1267037-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q24.2	LOC101929512, LINC01806	rs11678980-G	0.537289	1E-8		0.0119703	[0.0078-0.0162] unit increase	NR [16516521] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.2	NR	rs11678980-G	0.430417	2E-10		0.040411405	[0.028-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q24.2		rs11678980-?	NR	3E-9				NR [7857346] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	2q24.2		rs11678980-?	NR	3E-8				NR [7857346] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.2	NR	rs11678980-A	0.45	1E-21		0.0107655	[0.0086-0.013] unit increase	NR [9732723] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.2	NR	rs11678980-A	0.45	5E-12	(Conditioned on chr2:162802993)	0.0176689	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.2		rs11678980-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-A	0.4484	2E-23	(MTAG)	0.0179	[0.014-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-G	0.5516	8E-15		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-A	0.4482	4E-36	(MTAG)	0.0209	[0.018-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-G	0.5518	8E-16		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs11678980-A	0.4527	2E-31		0.0166	[0.014-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-A	0.4527	7E-39	(MTAG)	0.0173	[0.015-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-A	0.4585	6E-25	(MTAG)	0.0239	[0.019-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1821	chr2	162101260	162101261	rs11678980	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.2	Intergenic	rs11678980-A	0.4585	1E-10		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1822	chr2	162143401	162143402	rs10174311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q24.2		rs10174311-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1822	chr2	162148129	162148130	rs7566270	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	2q24.2	NR	rs7566270-T	0.0846491	7E-6				Illumina [5378266] (imputed)	N
1822	chr2	162224663	162224664	rs2303319	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	2q24.2	PSMD14	rs2303319-?	NR	9E-6		0.0451	[0.025-0.065] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1822	chr2	162265269	162265270	rs16845844	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	2q24.2	NR	rs16845844-G	0.0876652	7E-6				Illumina [5378266] (imputed)	N
1822	chr2	162265891	162265892	rs76713361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs76713361-A	0.9569	7E-11	(MTAG)	0.0368	[0.026-0.048] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1823	chr2	162274846	162274847	rs116175783	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs116175783-C	0.0448	2E-12	(MTAG)	0.0222	[0.016-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1823	chr2	162274846	162274847	rs116175783	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	TBR1	rs116175783-C	NR	5E-8		0.04267651	[0.027-0.058] unit increase	Affymetrix [NR]	N
1823	chr2	162278232	162278233	rs55732192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q24.2		rs55732192-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1823	chr2	162278232	162278233	rs55732192	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q24.2	SLC4A10	rs55732192-G	0.9053	1E-10		0.3358	[0.23-0.44] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1823	chr2	162280747	162280748	rs890076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs890076-A	0.8392	2E-8	(MTAG)	0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1823	chr2	162300285	162300286	rs13432654	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	2q24.2	PSMD14, TBR1, SLC4A10	rs13432654-?	0.0939	8E-6	(6-month follow-up)			Illumina [3017604] (imputed)	N
1823	chr2	162325199	162325200	rs6432686	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q24.2	TBR1	rs6432686-T	0.7115	3E-9		0.013149164	[0.0088-0.0175] unit increase	Affymetrix [11514654] (imputed)	N
1823	chr2	162333429	162333430	rs12468729	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q24.2	AHCTF1P1	rs12468729-G	0.6890000000000001	4E-6		1.0668374		NR [9372253] (imputed)	N
1824	chr2	162443933	162443934	rs79996792	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q24.2	NR	rs79996792-A	0.777	3E-6		0.019291617	[0.011-0.027] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1824	chr2	162485072	162485073	rs12473088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2q24.2		rs12473088-G	NR	3E-8		0.0535	[0.034-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1824	chr2	162504239	162504240	rs77155259	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	2q24.2	SLC4A10	rs77155259-G	0.944	2E-6		0.142	[0.083-0.201] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
1825	chr2	162566044	162566045	rs16846053	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	2q24.2	DPP4, SLC4A10	rs16846053-G	0.1	7E-8	(EA)	0.05	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1825	chr2	162573585	162573586	rs62189006	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q24.2	SLC4A10	rs62189006-A		7E-10		0.0092	[0.0063-0.0121] unit increase	Affymetrix [13304133] (imputed)	N
1825	chr2	162575984	162575985	rs56037433	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	2q24.2	SLC4A10	rs56037433-?	NR	9E-7				Affymetrix, Illumina [NR] (imputed)	N
1825	chr2	162582253	162582254	rs4664048	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	2q24.2	SLC4A10	rs4664048-?	NR	2E-11		0.04489	[0.032-0.058] unit decrease novel	Illumina [6108953] (imputed)	N
1825	chr2	162583140	162583141	rs62189012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q24.2		rs62189012-A	NR	2E-13		0.0234	[0.017-0.03] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1825	chr2	162583140	162583141	rs62189012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q24.2		rs62189012-A	NR	4E-12		0.0226	[0.016-0.029] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1825	chr2	162594351	162594351	rs35874258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q24.2		rs35874258-AT	NR	7E-11		0.0211	[0.015-0.027] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1826	chr2	162699011	162699012	rs1449631	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.2	NR	rs1449631-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1826	chr2	162699038	162699039	rs1449630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.2		rs1449630-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1827	chr2	162798580	162798581	rs6717424	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	2q24.2		rs6717424-?	NR	1E-8				NR [7857346] (imputed)	N
1827	chr2	162800371	162800372	rs13022438	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q24.2	SLC4A10	rs13022438-G	0.27	1E-11		0.0146	[0.0087-0.0205] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1827	chr2	162802183	162802184	rs11693702	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.2	NR	rs11693702-T	0.416501	1E-12		0.045211416	[0.033-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1827	chr2	162802183	162802184	rs11693702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q24.2		rs11693702-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1827	chr2	162802183	162802184	rs11693702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.2	Intergenic	rs11693702-A	0.4612	9E-13		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1827	chr2	162802794	162802795	rs13430823	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q24.2	CRB1, DENND1B	rs13430823-?		5E-10				NR [7428630] (imputed)	N
1827	chr2	162802794	162802795	rs13430823	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q24.2	DPP4	rs13430823-?		5E-22				NR [7428630] (imputed)	N
1827	chr2	162802992	162802993	rs12474587	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	2q24.2	SLC4A10	rs12474587-T		1E-12		1.025	[NR]	Affymetrix [up to 79000000] (imputed)	N
1827	chr2	162802992	162802993	rs12474587	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.2	NR	rs12474587-T	0.429	3E-29		0.0122636	[0.01-0.014] unit increase	NR [9732723] (imputed)	N
1827	chr2	162802992	162802993	rs12474587	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.2	NR	rs12474587-T	0.429	5E-21		0.024230579	[0.019-0.029] unit increase	NR [~ 10000000] (imputed)	N
1827	chr2	162802992	162802993	rs12474587	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q24.2	NR	rs12474587-T	0.438	4E-14		0.0111501	[0.0083-0.014] unit decrease	NR [9732723] (imputed)	N
1827	chr2	162803882	162803883	rs13421039	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2q24.2	DMRTA2, FAF1, CDKN2C	rs13421039-?		2E-10				NR [7428630] (imputed)	N
1827	chr2	162804677	162804678	rs1913808	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q24.2	NR	rs1913808-?		4E-10		0.0149234	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
1827	chr2	162813806	162813807	rs10221808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.2		rs10221808-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1827	chr2	162813806	162813807	rs10221808	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs10221808-A	0.6981	3E-10	(conditional-joint)	0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162815261	162815262	rs12466127	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q24.2	NR	rs12466127-A	0.376	2E-11		0.00922632	[0.0065-0.0119] unit increase	NR [~ 9732723] (imputed)	N
1827	chr2	162816727	162816728	rs12472555	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	2q24.2		rs12472555-?	NR	7E-10				NR [7857346] (imputed)	N
1827	chr2	162816727	162816728	rs12472555	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	2q24.2	SLC4A10, DPP4, GCG, FAP	rs12472555-T	0.534979	2E-8		0.00524055	[0.0034-0.007] unit decrease	NR [NR] (imputed)	N
1827	chr2	162818499	162818500	rs144049836	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q24.2	SLC4A10	rs144049836-A	0.0026	8E-6		0.4137	[0.23-0.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs4500960-T	0.4573	2E-37	(MTAG)	0.0212	[0.018-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.2	Intergenic	rs4500960-C	0.5427	2E-20		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs4500960-T	0.4647	1E-20		0.0131	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.2	Intergenic	rs4500960-T	0.4647	3E-30	(MTAG)	0.015	[0.012-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs4500960-T	0.4754	7E-26	(MTAG)	0.0241	[0.02-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	SLC4A10	rs4500960-T	NR	3E-11		6.637	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1827	chr2	162818620	162818621	rs4500960	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q24.2	NR	rs4500960-T	0.463	3E-10		0.014088472	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1827	chr2	162822708	162822709	rs13021985	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q24.2	NR	rs13021985-A	0.4176	1E-10	(Caudal Anterior Cingulate)	3.6056147	[2.51-4.7] unit increase	Affymetrix, Illumina [NR]	N
1827	chr2	162828000	162828001	rs4664442	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q24.2	SLC4A10	rs4664442-?	NR	1E-13		0.014770402	[0.011-0.019] unit decrease	NR [7306098]	N
1827	chr2	162828000	162828001	rs4664442	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q24.2	DPP4	rs4664442-A	0.4626	2E-15		0.015963325	[0.012-0.02] unit increase	Affymetrix [11514654] (imputed)	N
1827	chr2	162828000	162828001	rs4664442	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	SLC4A10	rs4664442-A	NR	5E-17		0.02457685	[0.019-0.03] unit decrease	Affymetrix [NR]	N
1827	chr2	162828729	162828730	rs34685708	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q24.2	DPP4, SLC4A10	rs34685708-?	NR	4E-7				Illumina [8000000] (imputed)	N
1827	chr2	162831755	162831756	rs4295021	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	2q24.2	NR	rs4295021-?		3E-6		0.27	unit increase	Illumina [1211988] (imputed)	N
1827	chr2	162831755	162831756	rs4295021	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of children	1,686 Bangladeshi women	NA	2q24.2	NR	rs4295021-?		7E-6		0.28	unit increase	Illumina [1211988] (imputed)	N
1827	chr2	162843077	162843078	rs2909455	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Subiculum volume	21,297 European ancestry individuals	NA	2q24.2	DPP4, SLC4A10	rs2909455-T	NR	6E-11		5.4	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162845275	162845276	rs2098526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs2098526-A	0.0279	2E-8		0.0241	[0.016-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162845564	162845565	rs1861979	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	2q24.2	SLC4A10, DPP4	rs1861979-T	NR	5E-13		39.54	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162845564	162845565	rs1861979	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume	21,297 European ancestry individuals	NA	2q24.2	SLC4A10, DPP4	rs1861979-T	NR	9E-22		11.92	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162845564	162845565	rs1861979	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Dentate gyrus molecular layer volume	21,297 European ancestry individuals	NA	2q24.2	SLC4A10, DPP4	rs1861979-T	NR	2E-10		6.42	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162845854	162845855	rs2909457	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q24.2	PEAR1, LRRC71, ARHGEF11, ETV3L	rs2909457-?		1E-21				NR [7428630] (imputed)	N
1827	chr2	162845854	162845855	rs2909457	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q24.2	NR	rs2909457-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
1827	chr2	162845854	162845855	rs2909457	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q24.2	NR	rs2909457-G	NR	6E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1827	chr2	162845854	162845855	rs2909457	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q24.2	DPP4, SLC4A10	rs2909457-G	0.407	5E-8		1.059322	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1827	chr2	162846438	162846439	rs2909443	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Hippocampal tail volume (corrected for total hippocampal volume)	21,297 European ancestry individuals	NA	2q24.2	SLC4A10, DPP4	rs2909443-G	NR	3E-13		6.11	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162851012	162851013	rs17759529	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	2q24.2	NR	rs17759529-C	0.844	6E-8	(Latino)	1.4925373	[1.3-1.72]	Affymetrix [9737707] (imputed)	N
1827	chr2	162851012	162851013	rs17759529	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	2q24.2	DPP4	rs17759529-C	NR	4E-7		1.3157895	[0.98-1.75]	Affymetrix [9737707] (imputed)	N
1827	chr2	162851146	162851147	rs12617656	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	2q24.2	DPP4	rs12617656-T	0.338	2E-21	(ACPA+ cases vs. all controls)	1.557	[NR]	Affymetrix [3441843] (imputed)	N
1827	chr2	162851146	162851147	rs12617656	24782177	Jiang L	2014-05-01	Arthritis Rheumatol	Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.	Rheumatoid arthritis	433 Han Chinese ancestry ACPA positive cases, 519 Han Chinese ancestry ACPA negative cases, 943 Han Chinese ancestry controls	1,032 Han Chinese ancestry ACPA positive cases, 1,100 Han Chinese ancestry ACPA negative cases, 2,553 Han Chinese ancestry controls	2q24.2	DPP4	rs12617656-T	0.338	1E-8	(all cases vs. all controls)	1.243	[NR]	Affymetrix [3441843] (imputed)	N
1827	chr2	162852078	162852079	rs4140685	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q24.2		rs4140685-T	0.35	1E-37		12.82	z score increase	Affymetrix [9061022] (imputed)	N
1827	chr2	162852078	162852079	rs4140685	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	DPP4	rs4140685-T	NR	6E-13		0.022647565	[0.016-0.029] unit increase	Affymetrix [NR]	N
1827	chr2	162856147	162856148	rs2268894	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q24.2		rs2268894-T	0.528	1E-8		42.664425	z score increase	NR [6814003]	N
1827	chr2	162856147	162856148	rs2268894	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Hippocampal volume	24,704 European ancestry individuals	NA	2q24.2	NR	rs2268894-T	NR	5E-13		7.231	NR z score decrease	NR [9145464] (imputed)	N
1827	chr2	162856147	162856148	rs2268894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs2268894-T	0.5421	1E-30	(MTAG)	0.0207	[0.017-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1827	chr2	162856147	162856148	rs2268894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.2	Intergenic	rs2268894-C	0.4579	2E-21		0.0186	[0.015-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162856147	162856148	rs2268894	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs2268894-T	NR	4E-14		7.562	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1827	chr2	162856147	162856148	rs2268894	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q24.2	DPP4	rs2268894-?	NR	9E-11		6.481	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1827	chr2	162856147	162856148	rs2268894	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	2q24.2	DPP4	rs2268894-?	NR	6E-6		4.528	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1827	chr2	162859435	162859436	rs12621633	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.2	NA	rs12621633-A	0.011	3E-9		0.0538	[0.036-0.072] unit increase	NR [~ 27400000] (imputed)	N
1827	chr2	162866991	162866992	rs2389643	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q24.2	NR	rs2389643-?	NR	2E-8	(right hippocampus)			NR [9227495] (imputed)	N
1827	chr2	162866991	162866992	rs2389643	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q24.2	NR	rs2389643-?	NR	2E-8	(left hippocampus)			NR [9227495] (imputed)	N
1827	chr2	162866991	162866992	rs2389643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs2389643-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1827	chr2	162867612	162867613	rs10166311	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q24.2	intergenic	rs10166311-A	0.326	1E-6		0.023	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1827	chr2	162867626	162867627	rs145965241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.2		rs145965241-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1827	chr2	162868857	162868858	rs1014444	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2q24.2		rs1014444-?	NR	5E-21				NR [9705931] (imputed)	N
1827	chr2	162868857	162868858	rs1014444	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q24.2	NR	rs1014444-A	0.6388	8E-11	(Lingual)	11.825866	[8.26-15.39] unit increase	Affymetrix, Illumina [NR]	N
1827	chr2	162887968	162887969	rs2284872	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q24.2	NR	rs2284872-A	0.3087	1E-17				NR [9056863] (imputed)	N
1827	chr2	162888054	162888055	rs2284871	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q24.2		rs2284871-T	0.33	8E-68		17.4	z score increase	Affymetrix [9061022] (imputed)	N
1827	chr2	162888054	162888055	rs2284871	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.2	NR	rs2284871-T	NR	1E-13		7.393	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1827	chr2	162888054	162888055	rs2284871	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	DPP4	rs2284871-T	NR	5E-13		7.222	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1827	chr2	162891074	162891075	rs2160927	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q24.2		rs2160927-T	0.34	1E-34		12.29	z score increase	Affymetrix [9061022] (imputed)	N
1827	chr2	162891074	162891075	rs2160927	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q24.2	NR	rs2160927-T	0.309	1E-17				NR [9056863] (imputed)	N
1827	chr2	162891847	162891848	rs6432708	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	2q24.2	DMRTA2, FAF1, CDKN2C	rs6432708-?		2E-13				NR [7428630] (imputed)	N
1827	chr2	162891847	162891848	rs6432708	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2q24.2	NR	rs6432708-?		7E-13				NR [7428630] (imputed)	N
1827	chr2	162891847	162891848	rs6432708	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	2q24.2	DPP4	rs6432708-T	0.581	2E-12		0.0162	[0.012-0.021] unit decrease	Illumina [~ 250000] (imputed)	N
1827	chr2	162893337	162893338	rs76077165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.2		rs76077165-A	0.0898	3E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1827	chr2	162901326	162901327	rs16822665	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q24.2		rs16822665-?	NR	6E-9				NR [7857346] (imputed)	N
1827	chr2	162901326	162901327	rs16822665	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q24.2	NR	rs16822665-T	0.3335	6E-10	(Pericalcarine)	6.782255	[4.64-8.92] unit decrease	Affymetrix, Illumina [NR]	N
1827	chr2	162901326	162901327	rs16822665	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.2	DPP4	rs16822665-?	NR	5E-9		0.01021	[0.0068-0.0136] unit decrease	Affymetrix [805426] (imputed)	N
1827	chr2	162910222	162910223	rs6741949	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q24.2	DPP4	rs6741949-G	0.56	2E-9				NR [> 9500000] (imputed)	N
1827	chr2	162910222	162910223	rs6741949	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q24.2	DPP4	rs6741949-G	0.564873	1E-8		1.0353172	[1.02308734324488-1.04769332486533]	NR [9572556] (imputed)	N
1827	chr2	162910222	162910223	rs6741949	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.2	DPP4	rs6741949-C	NR	4E-8		5.477	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1827	chr2	162910222	162910223	rs6741949	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	DPP4	rs6741949-C	NR	9E-9		0.017335674	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1827	chr2	162910222	162910223	rs6741949	22504421	Bis JC	2012-04-15	Nat Genet	Common variants at 12q14 and 12q24 are associated with hippocampal volume.	Hippocampal volume	9,232 European ancestry individuals	2,318 European ancestry individuals	2q24.2	DPP4	rs6741949-G	0.53	3E-7		52.8	[32.61-72.99] mm3 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1827	chr2	162910402	162910403	rs4664446	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.2	DPP4	rs4664446-A	NR	1E-8		0.017033944	[0.011-0.023] unit increase	Affymetrix [NR]	N
1827	chr2	162913165	162913166	rs67399148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs67399148-C	0.335449	3E-11				Affymetrix, Illumina [23467995] (imputed)	N
1827	chr2	162913165	162913166	rs67399148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q24.2	NR	rs67399148-C	0.389321	4E-12		0.013473	[0.0097-0.0173] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1828	chr2	162959747	162959748	rs2270447	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q24.2	NR	rs2270447-?	NR	8E-7	(earlobes)			Illumina [535076]	N
1828	chr2	162962044	162962045	rs2052401	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q24.2	DPP4	rs2052401-C	NR	2E-7		1.0669	NR	Affymetrix, Illumina [8278136] (imputed)	N
1828	chr2	162964300	162964301	rs75166367	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q24.2		rs75166367-A	NR	8E-11		0.0334	[0.023-0.043] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1828	chr2	163024376	163024377	rs2892827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.2	Intergenic	rs2892827-A	0.8085	1E-10	(MTAG)	0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1828	chr2	163024376	163024377	rs2892827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.2	Intergenic	rs2892827-A	0.8078	2E-10	(MTAG)	0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1828	chr2	163024376	163024377	rs2892827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.2	Intergenic	rs2892827-A	0.8001	4E-9	(MTAG)	0.0171	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1829	chr2	163067895	163067896	rs188497221	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCA	5,364 Icelandic ancestry individuals	NA	2q24.2		rs188497221-T	0.01052	1E-11		0.607861	[0.43-0.78] unit decrease	Illumina [7506463] (imputed)	N
1829	chr2	163071542	163071543	rs3838212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q24.2		rs3838212-T	NR	6E-9		0.0229	[0.015-0.031] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1829	chr2	163071542	163071543	rs3838212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q24.2		rs3838212-T	0.131366	2E-8		0.0243577	[0.016-0.033] unit decrease	Illumina [13478778] (imputed)	N
1829	chr2	163076145	163076146	rs2075302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.2		rs2075302-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1829	chr2	163076145	163076146	rs2075302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q24.2		rs2075302-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1829	chr2	163079010	163079011	rs76799118	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2q24.2		rs76799118-T	NR	3E-6	(GLM)	5.8703	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1829	chr2	163082394	163082395	rs11679244	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q24.2	FAP	rs11679244-A	0.153	3E-8		1.119	[1.08-1.16]	Illumina [11270530] (imputed)	N
1829	chr2	163089865	163089866	rs77335736	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q24.2	FAP	rs77335736-C	0.913	2E-8		0.252	[-0.02436-0.52836] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1829	chr2	163097969	163097970	rs3788967	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q24.2	FAP	rs3788967-?	NR	5E-8		0.03038	[0.019-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q24.2		rs2111485-G	NR	8E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q24.2		rs2111485-G	NR	1E-13		0.0664	[0.049-0.084] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q24.2		rs2111485-G	NR	6E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q24.2		rs2111485-G	NR	1E-15		0.0813	[0.061-0.101] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q24.2		rs2111485-G	NR	2E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q24.2		rs2111485-G	NR	1E-12		0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q24.2		rs2111485-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	2q24.2	NR	rs2111485-A	NR	3E-13		1.08	NR	NR [8016731] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q24.2	FAP, IFIH1	rs2111485-?	NR	4E-8		0.0290783	[0.019-0.039] unit increase	Illumina [4804024] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q24.2		rs2111485-G	0.608095	1E-13		0.016657537	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q24.2		rs2111485-G	0.608051	6E-17		0.018867277	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs2111485-G	0.508109	1E-20				Affymetrix, Illumina [24649327] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q24.2	NR	rs2111485-G	0.607202	4E-18		0.016757	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs2111485-G	0.532437	7E-13				Affymetrix, Illumina [19872809] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q24.2	NR	rs2111485-G	0.607698	1E-15		0.016185	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q24.2	FAP	rs2111485-A	0.391151	2E-13		0.0683547	[0.05-0.087] unit decrease	Affymetrix [7288503] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q24.2		rs2111485-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q24.2		rs2111485-?	NR	7E-17				NR [~ 8900000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q24.2	intergenic	rs2111485-A	0.4643	6E-10		0.0134	[0.0091-0.0177] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q24.2	FAP, IFIH1	rs2111485-?	NR	5E-12		1.1363636	[1.09-1.18]	Illumina [at least 5000000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2q24.2	IFIH1	rs2111485-G	0.6096	6E-25		1.2976902	[1.23-1.37]	Illumina [8966411] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2q24.2	IFIH1	rs2111485-?	0.404	3E-6	(EA)	1.15	[NR]	NR [6344733] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q24.2	FAP	rs2111485-?	NR	3E-13	(subset analysis)			Illumina [130052]	N
1829	chr2	163110535	163110536	rs2111485	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	2q24.2	IFIH1	rs2111485-G		1E-11		1.15	[1.11-1.20]	Illumina [644674]	N
1829	chr2	163110535	163110536	rs2111485	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q24.2	NR	rs2111485-A	0.3915	2E-10	(EA)	1.0891383	[1.06-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q24.2	IFIH1	rs2111485-G	0.61	4E-18		1.1764705		Illumina [135870]	N
1829	chr2	163110535	163110536	rs2111485	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	2q24.2	FAP, IFIH1	rs2111485-?	NR	2E-12	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1829	chr2	163110535	163110536	rs2111485	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	2q24.2	KCNH7, IFIH1	rs2111485-G	0.61	3E-8	(conditioned on rs17716942)	1.14		Illumina [111236] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q24.2	IFIH1	rs2111485-A	0.404	2E-8		1.066	[1.035-1.097]	Affymetrix, Illumina [1230000] (imputed)	N
1829	chr2	163110535	163110536	rs2111485	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	2q24.2	IFIH1	rs2111485-G	0.62	5E-15		1.3	[NR]	Illumina [495821]	N
1829	chr2	163114534	163114535	rs16846499	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.2	NR	rs16846499-?	NR	2E-8				Affymetrix [NR]	N
1829	chr2	163120822	163120823	rs12465701	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Adrenomedullin levels	21,758 European ancestry individuals	9,173 individuals	2q24.2		rs12465701-T	0.021	8E-18		0.2746	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q24.2		rs1990760-T	NR	3E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q24.2		rs1990760-C	0.391	7E-10				Affymetrix [10369434] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA	2q24.2	NR	rs1990760-T		2E-13		1.08		NR [8016731] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.2	IFIH1	rs1990760-T	0.608472	6E-17		0.018900173	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.2	IFIH1	rs1990760-T	0.60847	5E-12		0.01563267	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q24.2	IFIH1	rs1990760-T	0.608677	8E-16		0.018208921	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q24.2	NR	rs1990760-T	0.606771	7E-24		0.01898	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs1990760-T	0.546042	2E-12				Affymetrix, Illumina [23114412] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q24.2	NR	rs1990760-T	0.607214	1E-14		0.015149	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2q24.2	IFIH1	rs1990760-T	0.594	1E-14		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	2q24.2	IFIH1	rs1990760-T	0.627	4E-15		1.4285715	[NR]	Illumina [up to 9464381] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	2q24.2	IFIH1	rs1990760-T		4E-8		1.15	[NR]	Illumina [> 644674] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q24.2	NR	rs1990760-?	NR	4E-10	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2q24.2	IFIH1	rs1990760-T	0.61416	1E-7	(EA)	1.19	[1.12-1.28]	Illumina [up to 4778154] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2q24.2	IFIH1	rs1990760-T	0.614	1E-8		1.18	[1.12-1.25]	Illumina [up to 4778154] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	2q24.2	IFIH1	rs1990760-C	NR	2E-14		1.2	[NR]	Affymetrix, Illumina [NR]	N
1829	chr2	163124050	163124051	rs1990760	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	2q24.2	IFIH1	rs1990760-?	0.61	7E-10		1.49	[1.32-1.69]	Illumina [2057134] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	2q24.2	IFIH1	rs1990760-T	0.6	3E-7		1.17		Illumina [~ 2100000] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	2q24.2	IFIH1	rs1990760-?	NR	7E-9				Affymetrix, Illumina [841622] (imputed)	N
1829	chr2	163124050	163124051	rs1990760	17554260	Todd JA	2007-06-06	Nat Genet	Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes.	Type 1 diabetes	2,000 European ancestry cases, 3,000 European ancestry controls	2,997 European ancestry trios, 4,000 European ancestry cases, 5,000 European ancestry controls	2q24.2	IFIH1	rs1990760-A	0.60	2E-11		1.18	[1.11-1.23]	Affymetrix [NR]	N
1829	chr2	163124636	163124637	rs35667974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.2	NR	rs35667974-C	0.0198063	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
1829	chr2	163124636	163124637	rs35667974	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2q24.2	IFIH1	rs35667974-T	0.98	9E-13		1.2658228	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1829	chr2	163124636	163124637	rs35667974	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	2q24.2	IFIH1	rs35667974-?	0.978	1E-11		1.9022256		Illumina [252970]	N
1829	chr2	163124636	163124637	rs35667974	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q24.2	IFIH1	rs35667974-?	NR	5E-10	(subset analysis)			Illumina [130052]	N
1829	chr2	163124636	163124637	rs35667974	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q24.2	IFIH1	rs35667974-T	0.98	9E-9	(conditioned on rs2111485)	1.6949153		Illumina [135870]	N
1829	chr2	163128724	163128725	rs3747518	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAP	5,363 Icelandic ancestry individuals	NA	2q24.2		rs3747518-G	0.01264	3E-19		0.75741	[0.59-0.92] unit increase	Illumina [7506463] (imputed)	N
1829	chr2	163128823	163128824	rs3747517	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q24.2	IFIH1	rs3747517-?	NR	2E-9	(subset analysis)			Illumina [130052]	N
1829	chr2	163128823	163128824	rs3747517	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2q24.2	IFIH1	rs3747517-T	0.274	3E-11	(EA, conditional on rs1990760)	1.33	[1.23-1.45]	Illumina [up to 4778154] (imputed)	N
1829	chr2	163128823	163128824	rs3747517	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	2q24.2	IFIH1	rs3747517-T	0.274	1E-18	(conditional on rs1990760)	1.3	[1.22-1.37]	Illumina [up to 4778154] (imputed)	N
1829	chr2	163132345	163132346	rs78456138	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q24.2	IFIH1	rs78456138-C	0.975902	4E-8		0.0346587	[0.022-0.047] unit decrease	Affymetrix [NR] (imputed)	N
1829	chr2	163136941	163136942	rs72871627	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q24.2	IFIH1	rs72871627-?	NR	1E-8	(subset analysis)			Illumina [130052]	N
1829	chr2	163136941	163136942	rs72871627	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q24.2	IFIH1	rs72871627-A	0.99	2E-6	(conditioned rs2111485, rs35667974)	1.6393442		Illumina [135870]	N
1829	chr2	163167745	163167746	rs17715343	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCA	5,364 Icelandic ancestry individuals	NA	2q24.2		rs17715343-G	0.03881	8E-26		0.494537	[0.4-0.59] unit decrease	Illumina [7506463] (imputed)	N
1830	chr2	163224520	163224521	rs984971	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	2q24.2	KCNH7	rs984971-?	0.64	3E-14		1.201057		Illumina [252970]	N
1830	chr2	163260690	163260691	rs17716942	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	2q24.2	KCNH7, IFIH1	rs17716942-T	NR	5E-13		1.288	NR	Illumina [up to 11532644] (imputed)	N
1830	chr2	163260690	163260691	rs17716942	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	2q24.2	IFIH1	rs17716942-T	NR	3E-9		1.309	[1.198-1.433]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1830	chr2	163260690	163260691	rs17716942	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	2q24.2	KCNH7	rs17716942-?	NR	4E-11	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
1830	chr2	163260690	163260691	rs17716942	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	2q24.2	KCNH7, IFIH1	rs17716942-T	0.863	3E-18		1.27		Illumina [111236] (imputed)	N
1830	chr2	163260690	163260691	rs17716942	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	2q24.2	IFIH1	rs17716942-A	0.86	1E-13		1.29	[1.17-1.43]	Illumina [535475]	N
1830	chr2	163284066	163284067	rs33998987	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q24.2	KCNH7	rs33998987-T	0.6613	1E-7		0.0374	[0.024-0.051] unit increase	NR [8041861] (imputed)	N
1831	chr2	163334681	163334682	rs1485976	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2q24.2	NR	rs1485976-C	NR	1E-6		2.591	[1.76-3.81]	Illumina [13976150] (imputed)	N
1831	chr2	163336968	163336969	rs34777723	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q24.2	GCA	rs34777723-T	0.86125	7E-6	(GCA, 12594_5_3)	0.15979293	[0.09-0.23] unit increase	Illumina [> 1000000] (imputed)	N
1831	chr2	163373151	163373152	rs142647938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q24.2		rs142647938-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1831	chr2	163420423	163420424	rs75225668	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q24.2	NR	rs75225668-A	0.948	6E-7		0.041066177	[0.025-0.057] unit decrease	Affymetrix [up to 6544775] (imputed)	N
1832	chr2	163522975	163522976	rs147910466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q24.2		rs147910466-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1832	chr2	163539515	163539516	rs74698413	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q24.2	KCNH7	rs74698413-A	0.0592	4E-6		0.1582	[0.091-0.225] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1832	chr2	163539515	163539516	rs74698413	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2q24.2	KCNH7	rs74698413-A	0.0579	5E-6		0.1367	[0.078-0.196] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1833	chr2	163610171	163610172	rs115038670	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q24.2	KCNH7	rs115038670-T	0.992	4E-6	(AA)	0.118	unit increase	Illumina [NR] (imputed)	N
1833	chr2	163623931	163623932	rs305686	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q24.2	NR	rs305686-C	0.6267	2E-8		0.0294	[0.019-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1833	chr2	163689146	163689147	rs4667466	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	2q24.2	KCNH7	rs4667466-T	0.39	1E-6	(American Indian, additive )	1.39	[1.21-1.58]	Affymetrix [NR]	N
1834	chr2	163778612	163778613	rs148760487	25890600	Guo Q	2015-04-18	J Natl Cancer Inst	Identification of novel genetic markers of breast cancer survival.	Breast cancer (survival)	23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases		2q24.3	KCNH7, BC042876	rs148760487-?	0.01	2E-8		1.88	[1.51-2.34]	Affymetrix, Illumina [9000000] (imputed)	N
1834	chr2	163781786	163781787	rs1424760	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	2q24.3	KCNH7	rs1424760-?	NR	4E-8	(proportions)	0.7	[NR] % increase	Illumina [NR] (imputed)	N
1834	chr2	163817544	163817545	rs150943874	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q24.3	NR	rs150943874-?	NR	5E-6		0.019601	[0.011-0.028] unit increase	Affymetrix [805426] (imputed)	N
1834	chr2	163830426	163830427	rs11896887	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	KCNH7	rs11896887-A	NR	1E-9		6.046	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1835	chr2	163862280	163862281	rs6705342	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2q24.3	NR	rs6705342-A	NR	4E-6		0.0779	[0.045-0.111] unit increase	Illumina [11133794] (imputed)	N
1835	chr2	163886349	163886350	rs6759626	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	RPL7P61	rs6759626-A	NR	4E-8		5.474	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1835	chr2	163886712	163886713	rs7557527	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.3	NR	rs7557527-T	NR	2E-8		5.588	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1835	chr2	163923112	163923113	rs12692676	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q24.3	NR	rs12692676-G	0.317097	1E-9		0.046266794	[0.031-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1835	chr2	163933928	163933929	rs9287826	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs9287826-?	NR	9E-8		5.342	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1836	chr2	163975465	163975466	rs3956504	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.3	NR	rs3956504-A	0.316103	6E-9		0.039344694	[0.026-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1836	chr2	163975465	163975466	rs3956504	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.3	NR	rs3956504-A	NR	4E-9		5.866	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1836	chr2	163976034	163976035	rs7588384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.3	Intergenic	rs7588384-C	0.2673	4E-9		0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1836	chr2	164019141	164019142	rs12623456	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Interleukin-6 (red blood cell fatty acid level interaction)	2,703 individuals	NA	2q24.3	RPL7P61	rs12623456-?	0.016121001	3E-9	(DHA)	3.0244586	[2.03-4.02] unit increase	Affymetrix [2500000] (imputed)	N
1836	chr2	164072336	164072337	rs1018154	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q24.3	NR	rs1018154-A	NR	2E-8		5.617	z score decrease	Affymetrix [10847151] (imputed)	N
1837	chr2	164182421	164182422	rs55762028	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (metabolic subtype)	201 European ancestry cases, 2,964 European ancestry controls	128 European ancestry cases, 1,134 European ancestry controls	2q24.3	KCNH7, FIGN	rs55762028-C	0.01	1E-8		1.86	0.92-3.75	Illumina [NR] (imputed)	N
1837	chr2	164184328	164184329	rs1032843	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Chronic kidney disease	12,385 European ancestry cases, 104,780 European ancestry controls	33,972 European ancestry individuals	2q24.3	FIGN	rs1032843-T	0.07	6E-6		0.1174	[0.067-0.168] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1837	chr2	164189359	164189360	rs76281048	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	2q24.3	NR	rs76281048-?		9E-6		42.9841	[24.16-61.81] unit decrease	NR [NR] (imputed)	N
1837	chr2	164211712	164211713	rs7561377	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	2q24.3	NR	rs7561377-?		5E-6		2.22	[1.58-3.13]	Illumina [539473] (imputed)	N
1838	chr2	164257936	164257937	rs10469688	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2q24.3	NR	rs10469688-G	0.0264	8E-6		0.4037	[0.23-0.58] unit increase	Illumina [7305641] (imputed)	N
1838	chr2	164317875	164317876	rs12476047	19680635	Alkelai A	2009-08-13	Psychopharmacology (Berl)	Genome-wide association study of antipsychotic-induced parkinsonism severity among schizophrenia patients.	Response to antipsychotic treatment	140 European ancestry cases, 117 European ancestry controls, 57 African American cases, 72 African American controls, 2 cases, 9 controls	NA	2q24.3	FIGN	rs12476047-C	NR	3E-6		3.21	[1.97-5.25]	Affymetrix, Perlegen [495172]	N
1838	chr2	164326753	164326754	rs13014982	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs13014982-A	0.3509	7E-21	(MTAG)	0.0162	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr2	164326753	164326754	rs13014982	25823687	Cao S	2015-03-31	Pharmacogenomics J	Genome-wide association study of myelosuppression in non-small-cell lung cancer patients with platinum-based chemotherapy.	Platinum-induced myelosuppression in non-small cell lung cancer	328 Han Chinese ancestry cases	876 Han Chinese ancestry cases	2q24.3	FIGN	rs13014982-?		7E-6	(variant homozygote model)			Affymetrix [588732]	N
1838	chr2	164333145	164333146	rs1462163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.3	Intergenic	rs1462163-T	0.4164	2E-19	(MTAG)	0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr2	164333145	164333146	rs1462163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.3	Intergenic	rs1462163-C	0.5836	2E-17		0.0168	[0.013-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1838	chr2	164333145	164333146	rs1462163	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	2q24.3	NBAS	rs1462163-T	0.471039815	9E-6		0.031028014	[0.017-0.045] unit increase	Illumina [1632371] (imputed)	N
1838	chr2	164347756	164347757	rs1531447	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q24.3	FIGN	rs1531447-C	0.6189	4E-26		0.6962	[0.57-0.83] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1838	chr2	164350433	164350434	rs12478449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.3		rs12478449-T	0.6386	4E-13	(conditional-joint)	0.0106	[0.0077-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1838	chr2	164350433	164350434	rs12478449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs12478449-T	0.6386	2E-16	(MTAG)	0.0112	[0.0085-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr2	164350433	164350434	rs12478449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.3	Intergenic	rs12478449-T	0.6424	1E-10	(MTAG)	0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1838	chr2	164350433	164350434	rs12478449	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs12478449-?	NR	8E-6		4.475	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1838	chr2	164356101	164356102	rs2615333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.3	Intergenic	rs2615333-T	0.5682	7E-10		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1839	chr2	164375201	164375202	rs13018106	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	2q24.3	FIGN	rs13018106-C	0.42	2E-11		0.8	[0.56-1.04] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1839	chr2	164379657	164379658	rs12478156	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.3		rs12478156-T	0.6378	1E-13		0.0108	[0.0079-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1839	chr2	164444355	164444356	rs77559470	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	2q24.3	NR	rs77559470-?	NR	7E-9		0.02216	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
1839	chr2	164444418	164444419	rs75483173	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	NR	rs75483173-A	0.4644	2E-17	(East Asian)	0.3755	[0.29-0.46] unit decrease	Illumina [6200000] (imputed)	N
1839	chr2	164444418	164444419	rs75483173	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	NR	rs75483173-A	0.4644	4E-15	(East Asian)	0.3109	[0.23-0.39] unit decrease	Illumina [6200000] (imputed)	N
1839	chr2	164456998	164456999	rs34699899	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.3		rs34699899-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1839	chr2	164463485	164463486	rs59950510	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q24.3	NR	rs59950510-A	0.289	6E-6		0.0016	[0.00082-0.00238] unit increase	Affymetrix [NR] (imputed)	N
1839	chr2	164463485	164463486	rs59950510	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q24.3	FIGN	rs59950510-A	0.1181	1E-6		0.0692	[0.041-0.097] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1839	chr2	164490528	164490529	rs982393	19744961	Hazra A	2009-09-10	Hum Mol Genet	Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway.	Folate pathway vitamin levels	3,305 European ancestry females, 1,458 European ancestry males	NA	2q24.3	FIGN	rs982393-?	NR	8E-8	(Plasma folate)			Affymetrix, Illumina [~ 2500000] (imputed)	N
1840	chr2	164504722	164504723	rs78242064	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q24.3	FIGN	rs78242064-A	0.108	2E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1840	chr2	164506678	164506679	rs36014468	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	2q24.3		rs36014468-T	0.909563	7E-6		0.0212013	[0.012-0.03] unit increase	Illumina [13900000] (imputed)	N
1840	chr2	164508991	164508991	rs35967241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q24.3		rs35967241-CA	NR	3E-10		0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1840	chr2	164523800	164523801	rs56328583	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.3	Intergenic	rs56328583-T	0.1557	2E-9	(MTAG)	0.0189	[0.013-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1840	chr2	164531304	164531305	rs10497239	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs10497239-A	0.168	4E-14	(MTAG)	0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q24.3	NA	rs1460676-T	0.8242	2E-12		0.0153	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q24.3	NA	rs1460676-T	0.8242	2E-12		0.0153	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q24.3	NR	rs1460676-T	NR	4E-8		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	FIGN	rs1460676-T	0.8195	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q24.3	FIGN	rs1460676-T	0.8195	7E-6		0.0216	[0.012-0.031] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	FIGN	rs1460676-T	0.8195	2E-6		0.02	[0.012-0.028] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1840	chr2	164567688	164567689	rs1460676	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q24.3	FIGN	rs1460676-C	0.179	5E-8		0.021	[0.013-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1840	chr2	164567688	164567689	rs1460676	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q24.3	FIGN	rs1460676-C	0.173	9E-7	(EA)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1840	chr2	164573846	164573847	rs28473311	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.3	Intergenic	rs28473311-C	0.8314	4E-17	(MTAG)	0.0201	[0.015-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1840	chr2	164574343	164574344	rs80163246	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q24.3	FIGN	rs80163246-C		4E-15		0.0107	[0.008-0.0134] unit increase	Affymetrix [13304133] (imputed)	N
1840	chr2	164581240	164581241	rs10192119	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.3		rs10192119-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1840	chr2	164581240	164581241	rs10192119	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs10192119-T	0.8348	2E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1840	chr2	164584155	164584156	rs1460678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	FIGN	rs1460678-G	NR	2E-10		0.0286676	[0.02-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1840	chr2	164584155	164584156	rs1460678	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q24.3	NR	rs1460678-C	0.875621569312418	4E-8		0.025796715	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1840	chr2	164585003	164585004	rs9287838	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.3	Intergenic	rs9287838-G	0.1672	3E-16		0.0213	[0.016-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1840	chr2	164593147	164593148	rs62173861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	FIGN	rs62173861-G	NR	1E-8		0.0256201	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1840	chr2	164593147	164593148	rs62173861	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	FIGN	rs62173861-G	NR	2E-10		0.0286239	[0.02-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1840	chr2	164602145	164602146	rs1460673	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	2q24.3	intergenic	rs1460673-A	0.39	9E-6		0.664	[0.37-0.96] unit decrease	Illumina [at least 4683137] (imputed)	N
1841	chr2	164630951	164630952	rs7576072	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q24.3	FIGN, LOC100129745	rs7576072-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
1841	chr2	164731393	164731394	rs717366	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	2q24.3	FIGN, GRB14	rs717366-T	0.3945	6E-7		0.0184	unit increase	Illumina [242296]	N
1841	chr2	164732023	164732024	rs6713647	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.3		rs6713647-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1842	chr2	164801784	164801785	rs76833157	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q24.3	intergenic	rs76833157-C	0.008	1E-6		6.67	[2.75-16.17]	Illumina [1556551]	N
1842	chr2	164808566	164808567	rs3860432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs3860432-T	0.6469	1E-8	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1842	chr2	164844819	164844820	rs76273806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.3	NR	rs76273806-T	0.01045	3E-16	(KRT10)	1.566	NR unit increase	Illumina [1671387] (imputed)	N
1842	chr2	164862638	164862639	rs357304	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q24.3	NA	rs357304-T		1E-47		0.0296244	[0.026-0.034] unit decrease	Illumina [13288253] (imputed)	N
1842	chr2	164862638	164862639	rs357304	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.3	NR	rs357304-C	0.727	5E-9		0.016675718	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1842	chr2	164862645	164862646	rs357303	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.3	NR	rs357303-C	0.726	2E-13		0.00893967	[0.0066-0.0113] unit increase	NR [9732723] (imputed)	N
1842	chr2	164877929	164877930	rs399984	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.3	NA	rs399984-C	0.7788	2E-9		0.0129	[0.0086-0.0172] unit increase	NR [~ 27400000] (imputed)	N
1842	chr2	164879902	164879903	rs10165889	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q24.3	FIGN	rs10165889-C	0.779761	8E-9		0.0138055	[0.0089-0.0187] unit decrease	NR [16516521] (imputed)	N
1843	chr2	164889133	164889134	rs2892895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q24.3		rs2892895-A	0.365397442	1E-8		0.079444356	[0.052-0.107] unit decrease	Illumina [13427135] (imputed)	N
1843	chr2	164890058	164890059	rs57624819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q24.3	Intergenic	rs57624819-T	0.7876	4E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1843	chr2	164892591	164892592	rs4667725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q24.3		rs4667725-C	NR	3E-11		0.0646	[0.046-0.084] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
1843	chr2	164892591	164892592	rs4667725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2q24.3		rs4667725-C	NR	5E-10		0.0546	[0.037-0.072] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
1843	chr2	164899682	164899683	rs16849211	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs16849211-T	0.36	1E-8	(Japanese)	0.4432	[0.29-0.6] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164899682	164899683	rs16849211	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs16849211-T	0.36	4E-8	(Japanese)	0.3027	[0.19-0.41] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164899682	164899683	rs16849211	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs16849211-T	0.36	2E-6	(Japanese)	0.0657	[0.038-0.093] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164899682	164899683	rs16849211	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs16849211-T	0.36	4E-6	(Japanese)	0.2304	[0.13-0.33] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164899682	164899683	rs16849211	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q24.3	FIGN, GRB14	rs16849211-T	0.233	3E-11	(EA, initial)	0.364	[0.26-0.47] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs16849225-T	0.38	3E-9	(Japanese)	0.4594	[0.31-0.61] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs16849225-T	0.3809	3E-9	(Japanese)	0.3218	[0.21-0.43] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs16849225-T	0.3809	2E-7	(Japanese)	0.0727	[0.045-0.1] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs16849225-T	0.3809	3E-7	(Japanese)	0.2512	[0.15-0.35] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		4E-12		0.443	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		1E-9	(EA)	0.428	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		2E-19		0.402	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		2E-6	(East Asian)	0.653	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		2E-19		0.383	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		2E-13	(EA)	0.348	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q24.3	FIGN, GRB14	rs16849225-C		4E-30		0.339	unit increase	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2q24.3	FIGN, GRB14	rs16849225-T	0.399	3E-8	(East Asians)	0.8599	[0.56-1.16] mmHg decrease	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
1843	chr2	164906819	164906820	rs16849225	21572416	Kato N	2011-05-15	Nat Genet	Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.	Blood pressure	19,608 East Asian ancestry individuals	30,765 East Asian ancestry individuals	2q24.3	GRB14, FIGN	rs16849225-C	0.61	4E-11	(Systolic)	0.75	[0.53-0.97] mm Hg increase	Affymetrix, Illumina [1700000] (imputed)	N
1843	chr2	164908563	164908564	rs67453060	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q24.3		rs67453060-C	0.758	1E-12		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1843	chr2	164912118	164912119	rs13031230	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q24.3		rs13031230-T	NR	7E-11		0.0595	[0.042-0.077] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
1843	chr2	164915207	164915208	rs13002573	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs13002573-A	0.64	9E-9	(Japanese)	0.4473	[0.29-0.6] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	164915207	164915208	rs13002573	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs13002573-A	0.6396	3E-8	(Japanese)	0.306	[0.2-0.41] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	164915207	164915208	rs13002573	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs13002573-A	0.6396	2E-6	(Japanese)	0.0668	[0.04-0.094] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	164915207	164915208	rs13002573	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs13002573-A	0.6396	3E-6	(Japanese)	0.2329	[0.14-0.33] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	164915207	164915208	rs13002573	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	2q24.3	FIGN	rs13002573-G	0.20	2E-8	(Pulse Pressure)	0.31	[0.20-0.42] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1843	chr2	164918871	164918872	rs10930113	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	2q24.3		rs10930113-G	0.766989	2E-8		0.0423678	[0.026-0.059] decrease	Affymetrix [NR]	N
1843	chr2	164920136	164920137	rs7582837	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2q24.3	GRB14	rs7582837-C	0.2706	6E-9		0.015490973	[0.01-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1843	chr2	164921769	164921770	rs35303331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q24.3		rs35303331-G	0.363831365	1E-8		0.07076464	[0.046-0.095] unit decrease	Illumina [13427711] (imputed)	N
1843	chr2	164924572	164924573	rs72874178	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q24.3	FIGN, GRB14	rs72874178-?	NR	1E-20		0.0525699	[0.042-0.064] unit decrease	Illumina [4804024] (imputed)	N
1843	chr2	164927580	164927581	rs679866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.3	Intergenic	rs679866-A	0.7844	2E-16	(MTAG)	0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1843	chr2	164927580	164927581	rs679866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.3	Intergenic	rs679866-G	0.2156	2E-13		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1843	chr2	164927580	164927581	rs679866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs679866-A	0.7842	5E-14	(MTAG)	0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1843	chr2	164927580	164927581	rs679866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.3	Intergenic	rs679866-A	0.7831	1E-10	(MTAG)	0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1843	chr2	164927705	164927706	rs10930114	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2q24.3	FIGN, GRB14	rs10930114-?	NR	2E-14		0.079214	[0.059-0.099] unit decrease	Illumina [19707525] (imputed)	N
1843	chr2	164927705	164927706	rs10930114	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q24.3	NR	rs10930114-A	0.234	2E-10		0.0109962	[0.0076-0.0144] unit decrease	NR [9732723] (imputed)	N
1843	chr2	164930381	164930382	rs10930115	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q24.3	FIGN, GRB14	rs10930115-A	0.78975	6E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
1843	chr2	164934708	164934709	rs34611819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q24.3		rs34611819-A	NR	2E-33		0.0264	[0.022-0.031] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1843	chr2	164936214	164936215	rs13026245	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q24.3	intergenic	rs13026245-T	0.1744	8E-19		0.2918	[0.23-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
1843	chr2	164945043	164945044	rs12619842	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2q24.3	FIGN, GRB14	rs12619842-G	0.79	3E-8		1.05	[1.04-1.07]	Illumina [5167567] (imputed)	N
1843	chr2	164945043	164945044	rs12619842	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q24.3	intergenic	rs12619842-C	0.1811	6E-11		0.0549	[0.038-0.071] unit decrease	NR [8041861] (imputed)	N
1843	chr2	164950455	164950456	rs2675149	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	2q24.3	NR	rs2675149-?	NR	2E-12		0.04366255	NR unit increase	Affymetrix [464137]	N
1843	chr2	164954173	164954174	rs268263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q24.3		rs268263-A	NR	9E-39		0.0272	[0.023-0.031] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1843	chr2	164954173	164954174	rs268263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	2q24.3		rs268263-A	NR	3E-9		0.0418	[0.028-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1843	chr2	164954173	164954174	rs268263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2q24.3		rs268263-A	NR	5E-15		0.0428	[0.032-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1843	chr2	164954173	164954174	rs268263	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	2q24.3	AC092684.1	rs268263-T	0.244695	2E-8		0.05207466	[0.034-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
1843	chr2	164954173	164954174	rs268263	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2q24.3	AC092684.1	rs268263-T	0.244312	1E-10		0.04583046	[0.032-0.06] unit decrease	Affymetrix [7288503] (imputed)	N
1843	chr2	164954173	164954174	rs268263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q24.3		rs268263-?	NR	1E-54				NR [~ 8900000] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		2E-16		0.505	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-11	(EA)	0.467	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-32		0.517	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-7	(East Asian)	0.738	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-6	(EA)	0.222	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-11		0.276	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q24.3	NR	rs268263-T		2E-23		0.289	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		7E-9		0.232	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q24.3	NR	rs268263-T		4E-8	(EA)	0.244	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164954173	164954174	rs268263	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q24.3	NR	rs268263-T		1E-16		0.221	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1843	chr2	164957250	164957251	rs12999907	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q24.3	intergenic	rs12999907-A	0.8189	6E-11		0.0482	[0.034-0.063] unit increase	Affymetrix [at least 7947838] (imputed)	N
1843	chr2	164957250	164957251	rs12999907	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q24.3	intergenic	rs12999907-A	0.819	2E-11		0.056	[0.04-0.072] unit increase	Affymetrix [7947838] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs1446468-T	0.46	2E-8	(Japanese)	0.4295	[0.28-0.58] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs1446468-T	0.4577	6E-8	(Japanese)	0.2931	[0.19-0.4] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs1446468-T	0.4577	5E-6	(Japanese)	0.2239	[0.13-0.32] unit decrease	Illumina [6200000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	2q24.3	FIGN, GRB14	rs1446468-?	NR	1E-34				Affymetrix, Illumina [18800000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	2q24.3	FIGN, GRB14	rs1446468-?		2E-23				Affymetrix, Illumina [18800000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q24.3	FIGN, GRB14	rs1446468-C	0.55	3E-13	(EA, initial)	0.538	[0.39-0.68] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q24.3	FIGN, GRB14	rs1446468-C	0.55	2E-11	(EA, initial)	0.301	[0.21-0.39] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	28698626	Lopez-Mejias R	2017-07-11	Sci Rep	A genome-wide association study suggests the HLA Class II region as the major susceptibility locus for IgA vasculitis.	Immunoglobulin A vasculitis	285 European ancestry cases, 1,006 European ancestry controls	NA	2q24.3	FIGN, GRB14	rs1446468-?		6E-6		1.5625	[1.28-1.89]	Illumina [1909910] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Mean arterial pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2q24.3	FIGN	rs1446468-T	0.4878	2E-6		0.3106	[0.18-0.44] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1843	chr2	164963485	164963486	rs1446468	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	2q24.3	FIGN	rs1446468-T	0.53	6E-12	(Mean Arterial Pressure)	0.336	[0.24-0.44] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1843	chr2	165001187	165001188	rs16849273	32709000	Jeong H	2020-07-17	Nutrients	Identifying Interactions between Dietary Sodium, Potassium, Sodium-Potassium Ratios, and FGF5 rs16998073 Variants and Their Associated Risk for Hypertension in Korean Adults.	Hypertension	8,178 Korean ancestry cases, 9,558 Korean ancestry controls	NA	2q24.3	NR	rs16849273-G	0.39	5E-9		0.87	[0.83-0.91]	Affymetrix [NR]	N
1843	chr2	165004475	165004476	rs1446477	34026292	Juang JJ	2020-12-07	J Adv Res	Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: Applications to cardiovascular medicine.	Hypertension	2,936 Han Chinese ancestry cases, 7,742 Han Chinese ancestry controls	NA	2q24.3		rs1446477-?	NR	9E-8		0.8116		NR [577656]	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	2q24.3		rs73029563-G	0.571312	9E-14		0.0253622	[0.019-0.032] unit increase	Illumina [13477770] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2q24.3		rs73029563-G	NR	3E-15		0.0458	[0.034-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	2q24.3		rs73029563-G	NR	2E-8		0.0376	[0.024-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q24.3		rs73029563-G	NR	1E-31		0.0224	[0.019-0.026] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	2q24.3		rs73029563-G	0.571324	5E-12		0.0241685	[0.017-0.031] unit increase	Illumina [13477767] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q24.3		rs73029563-G	NR	2E-20		0.0184	[0.014-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	2q24.3		rs73029563-G	0.571317	3E-8		0.0197819	[0.013-0.027] unit increase	Illumina [13477770] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q24.3	intergenic	rs73029563-G	0.5067	2E-25		0.3584	[0.29-0.43] mmHg decrease	Affymetrix [NR] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	2q24.3	GRB14	rs73029563-C	0.46	9E-26	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	2q24.3	GRB14	rs73029563-C	0.45	2E-37	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1843	chr2	165008165	165008166	rs73029563	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q24.3	GRB14	rs73029563-C	0.46	6E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	NR	rs10184428-A	0.5737	2E-16	(East Asian)	0.54	[0.41-0.67] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2q24.3	NR	rs10184428-A	0.5736	2E-8	(East Asian)	0.2466	[0.16-0.33] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	2q24.3	FIGN, GRB14	rs10184428-A	0.5737	1E-7	(Japanese)	0.2869	[0.18-0.39] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs10184428-A	0.5737	1E-11	(Japanese)	0.3767	[0.27-0.49] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs10184428-A	0.5736	5E-11	(East Asian)	0.0783	[0.055-0.102] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs10184428-A	0.5737	2E-8	(Japanese)	0.2812	[0.18-0.38] unit increase	Illumina [6200000] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q24.3	GRB14	rs10184428-A	0.55	7E-19	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q24.3	GRB14	rs10184428-A	0.55	2E-26	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	2q24.3	FIGN, GRB14	rs10184428-?	NR	3E-11		0.02661	[0.019-0.034] unit increase	Illumina [6108953] (imputed)	N
1843	chr2	165011826	165011827	rs10184428	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	2q24.3	FIGN, GRB14	rs10184428-?	NR	1E-9		0.02452	[0.017-0.032] unit increase novel	Illumina [6108953] (imputed)	N
1844	chr2	165043459	165043460	rs6712094	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN-GRB14	rs6712094-A	0.68	2E-8	(Japanese)	0.45	[0.29-0.61] unit increase	Illumina [6200000] (imputed)	N
1844	chr2	165043459	165043460	rs6712094	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs6712094-A	0.6763	1E-7	(Japanese)	0.2982	[0.19-0.41] unit increase	Illumina [6200000] (imputed)	N
1844	chr2	165043459	165043460	rs6712094	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	2q24.3	FIGN, GRB14	rs6712094-A	0.6763	3E-7	(Japanese)	0.0711	[0.044-0.098] unit increase	Illumina [6200000] (imputed)	N
1844	chr2	165045100	165045101	rs1371187	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	2q24.3	GRB14	rs1371187-A	0.58	2E-20	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1844	chr2	165047745	165047746	rs10204405	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	2q24.3	intergenic	rs10204405-A	0.47605425842546	6E-9		0.29131863	[0.19-0.39] unit decrease	Illumina [247039]	N
1844	chr2	165047904	165047905	rs13021222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q24.3		rs13021222-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1844	chr2	165050405	165050406	rs13035910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.3		rs13035910-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1844	chr2	165052290	165052291	rs438885	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2q24.3	GRB14	rs438885-A	0.42	2E-13	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1844	chr2	165052290	165052291	rs438885	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2q24.3	GRB14	rs438885-A	0.42	6E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1844	chr2	165052290	165052291	rs438885	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	2q24.3	GRB14	rs438885-A	0.42	2E-9	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1844	chr2	165070206	165070207	rs1898841	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	2q24.3	NR	rs1898841-?	NR	1E-16		0.05697489	NR unit increase	Affymetrix [464137]	N
1844	chr2	165086746	165086747	rs11891401	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	2q24.3	GRB14, FIGN	rs11891401-T		2E-6	(EA, SBP, Age 50-59)	0.67	[0.4-0.94] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1844	chr2	165094299	165094300	rs1439211	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	2q24.3	AC092684.1	rs1439211-A	0.273839	9E-10		0.055266418	[0.038-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1844	chr2	165099214	165099215	rs1371182	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2q24.3	FIGN, GRB14	rs1371182-T	0.443	2E-14		0.444	[0.33-0.56] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1844	chr2	165099214	165099215	rs1371182	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	2q24.3	FIGN, GRB14	rs1371182-T	0.443	2E-12		0.252	[0.18-0.32] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1844	chr2	165118601	165118602	rs190074712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q24.3	Intergenic	rs190074712-?		2E-6		1.17	[1.10-1.25]	Illumina [7645193] (imputed)	N
1844	chr2	165118601	165118602	rs190074712	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q24.3	Intergenic	rs190074712-?		3E-7		4.68	[2.60-8.43]	Illumina [7645193] (imputed)	N
1845	chr2	165176540	165176541	rs13006079	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q24.3	GRB14	rs13006079-A	0.1822	9E-9		0.014456498	[0.0095-0.0194] unit increase	Illumina [9339358] (imputed)	N
1845	chr2	165178852	165178853	rs4667458	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Waist circumference	8,842 Korean ancestry individuals	NA	2q24.3	NR	rs4667458-?		5E-6				NR [327872]	N
1846	chr2	165285146	165285147	rs17352892	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.3	NR	rs17352892-?	NR	7E-9				Affymetrix [NR]	N
1846	chr2	165313613	165313614	rs1451895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC110086.1	rs1451895-A	NR	2E-11		0.0191138	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1846	chr2	165313613	165313614	rs1451895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC110086.1	rs1451895-A	NR	1E-11		0.0192254	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1846	chr2	165321512	165321513	rs556382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q24.3		rs556382-G	NR	1E-8		0.0425	[0.028-0.057] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1846	chr2	165337713	165337714	rs6757477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6757477-G	NR	2E-10		0.0192996	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1846	chr2	165339872	165339873	rs6708363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs6708363-G	NR	1E-12		0.0199619	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165339872	165339873	rs6708363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6708363-G	NR	6E-13		0.0202367	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165345659	165345660	rs10170665	28224759	Pei YF	2017-02-22	Obesity (Silver Spring)	Genomic variants at 20p11 associated with body fat mass in the European population.	Body fat mass	9,179 European ancestry individuals	NA	2q24.3	intergenic	rs10170665-?		3E-8				Affymetrix [6817908] (imputed)	N
1846	chr2	165346063	165346064	rs4667462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667462-G	NR	6E-15		0.0232338	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165346063	165346064	rs4667462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667462-G	NR	8E-15		0.0231509	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165347168	165347169	rs4667755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667755-A	NR	1E-9		0.017867	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1846	chr2	165347168	165347169	rs4667755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667755-A	NR	7E-10		0.0181577	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1846	chr2	165351207	165351208	rs1451892	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	GRB14	rs1451892-C	NR	2E-9		0.0179708	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1846	chr2	165358671	165358672	rs4667463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667463-A	NR	1E-8		0.0199558	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165358671	165358672	rs4667463	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs4667463-A	NR	6E-9		0.020304	[0.013-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1846	chr2	165381517	165381518	rs75536691	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2q24.3	NR	rs75536691-G	0.0218	8E-10		0.1951	[0.13-0.26] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1846	chr2	165381517	165381518	rs75536691	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2q24.3		rs75536691-G	0.022730208	7E-10		0.84158844	[0.796745484-0.888955249]	Illumina [8919992] (imputed)	N
1846	chr2	165381517	165381518	rs75536691	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2q24.3	GRB14	rs75536691-A	0.976	1E-15		1.2	[1.15-1.25]	Affymetrix, Illumina [11800000] (imputed)	N
1846	chr2	165381517	165381518	rs75536691	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2q24.3	GRB14	rs75536691-A	0.98	9E-10		1.21	1.14-1.29	Illumina [12557761] (imputed)	N
1847	chr2	165413448	165413449	rs143197602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q24.3		rs143197602-A	NR	4E-9		0.0123	[0.0082-0.0164] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1847	chr2	165414740	165414741	rs1568506	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.3	NR	rs1568506-?	NR	5E-8				Affymetrix [NR]	N
1847	chr2	165436054	165436055	rs11691134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.3		rs11691134-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1847	chr2	165437721	165437722	rs13027837	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	2q24.3	GRB14	rs13027837-A	0.18	1E-6		0.67	[0.4-0.94] unit increase	Illumina [5833901] (imputed)	N
1847	chr2	165438659	165438660	rs73028077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs73028077-A	NR	2E-8		0.0597502	[0.039-0.08] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165438659	165438660	rs73028077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs73028077-A	NR	2E-8		0.0597278	[0.039-0.08] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165443126	165443127	rs12692724	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	2q24.3	NR	rs12692724-T		2E-6		0.3107	[0.18-0.44] unit increase	Illumina [NR] (imputed)	N
1847	chr2	165452414	165452415	rs6750775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs6750775-C	NR	1E-10		0.0338393	[0.024-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165452414	165452415	rs6750775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6750775-C	NR	1E-10		0.0338211	[0.024-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165452414	165452415	rs6750775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6750775-C	NR	1E-8		0.0300167	[0.02-0.04] unit decrease	Affymetrix [321169] (imputed)	N
1847	chr2	165452741	165452742	rs4319945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs4319945-C	NR	2E-8		0.0177727	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165452741	165452742	rs4319945	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs4319945-C	NR	1E-8		0.018206	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165452985	165452986	rs66756157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs66756157-C	NR	3E-9		0.0547331	[0.037-0.073] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165452985	165452986	rs66756157	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs66756157-C	NR	4E-9		0.0543688	[0.036-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165455034	165455035	rs12613292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs12613292-T	NR	3E-12		0.0199415	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165455034	165455035	rs12613292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs12613292-T	NR	1E-12		0.0202702	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165463019	165463020	rs6744405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs6744405-G	NR	4E-13		0.0381389	[0.028-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165463019	165463020	rs6744405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6744405-G	NR	4E-13		0.0381807	[0.028-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165463019	165463020	rs6744405	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs6744405-G	NR	3E-9		0.0324119	[0.022-0.043] unit increase	Affymetrix [321788] (imputed)	N
1847	chr2	165467067	165467068	rs4128205	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q24.3	GRB14	rs4128205-A	0.490831	5E-9		0.0116817	[0.0078-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
1847	chr2	165476252	165476253	rs61748245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs61748245-A	NR	2E-21		0.0284888	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165476252	165476253	rs61748245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	GRB14	rs61748245-A	NR	5E-14		0.0228388	[0.017-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1847	chr2	165477902	165477903	rs62173895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs62173895-G	NR	2E-21		0.0285068	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165477902	165477903	rs62173895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	GRB14	rs62173895-G	NR	5E-11		0.0198769	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1847	chr2	165481588	165481589	rs7609494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs7609494-T	NR	9E-11		0.0218805	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165481588	165481589	rs7609494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs7609494-T	NR	9E-11		0.0218878	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165485977	165485978	rs4487103	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	2q24.3	GRB14, COBLL1	rs4487103-C	0.6	2E-6	(EA)	0.08	[0.041-0.119] unit decrease	Illumina [~ 8300000] (imputed)	N
1847	chr2	165487915	165487916	rs7594266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	GRB14	rs7594266-G	NR	2E-10		0.0296915	[0.021-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165487915	165487916	rs7594266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	GRB14	rs7594266-G	NR	3E-10		0.0295607	[0.02-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q24.3	GRB14, COBLL1	rs3923113-?		4E-10		0.0415	[0.029-0.054] unit increase	Illumina [31500000] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q24.3	GRB14	rs3923113-C	0.4085	4E-10	(EA)	0.0686	[0.047-0.09] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q24.3	GRB14	rs3923113-C	0.4085	1E-13		0.071	[0.051-0.091] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	2q24.3	GRB14	rs3923113-A	0.61	2E-6		1.04	[1.00-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q24.3	GRB14	rs3923113-A	NR	2E-9	(female)	1.11	[1.08-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1847	chr2	165501848	165501849	rs3923113	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	2q24.3	GRB14	rs3923113-A	0.74	1E-8		1.09	[1.06-1.13]	Illumina [568976]	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	2E-11		0.0253125	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	2q24.3		rs5835988-T	0.59542	8E-18		0.0350339	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	1E-8		0.0217394	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595433	8E-16		0.0325515	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Isoleucine levels	115,079 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595432	1E-13		0.0306293	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	3E-19		0.033704	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	2q24.3		rs5835988-T	0.5954	5E-9		0.024424	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	2E-9		0.0229498	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	1E-13		0.0276087	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	4E-8		0.0212317	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	6E-13		0.0279669	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	1E-20		0.0352345	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	3E-12		0.0270452	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2q24.3		rs5835988-T	0.595434	3E-8		0.0213277	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q24.3	NR	rs5835988-TG	0.404685	4E-35		0.028138679	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q24.3	NR	rs5835988-TG	0.404681	1E-42		0.03117468	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q24.3		rs5835988-TG	0.404727	3E-31		0.026361227	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q24.3		rs5835988-TG	0.40472	1E-36		0.02867174	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165501927	165501927	rs5835988	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q24.3	intergenic	rs5835988-?	0.5473	2E-26		0.03	[0.025-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	9E-48		0.0325	[0.028-0.037] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	9E-11		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	3E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	1E-8		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	3E-10		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1847	chr2	165501929	165501929	rs397791024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q24.3		rs397791024-TG	NR	1E-23		0.0213	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1847	chr2	165502910	165502911	rs78343493	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q24.3		rs78343493-A	NR	1E-8		0.0213	[0.014-0.029] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1847	chr2	165502910	165502911	rs78343493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs78343493-A	0.120422	9E-11				Affymetrix, Illumina [21126107] (imputed)	N
1847	chr2	165502910	165502911	rs78343493	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	2q24.3	COBLL1	rs78343493-A	0.119101	5E-26		0.014803	[0.012-0.018] unit increase	Affymetrix [9463307] (imputed)	N
1847	chr2	165502910	165502911	rs78343493	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q24.3	NR	rs78343493-G	0.88082	9E-10		0.0192806	[0.013-0.025] unit decrease	NR [NR]	N
1847	chr2	165502910	165502911	rs78343493	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs78343493-?	NR	3E-38				Affymetrix [~ 8270000] (imputed)	N
1847	chr2	165504564	165504565	rs12692735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2q24.3		rs12692735-T	NR	3E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1847	chr2	165504840	165504841	rs13391980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13391980-A	NR	1E-83		0.0844803	[0.076-0.093] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165504840	165504841	rs13391980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13391980-A	NR	1E-85		0.0855188	[0.077-0.094] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165504840	165504841	rs13391980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13391980-A	NR	3E-50		0.0655685	[0.057-0.074] unit decrease	Affymetrix [321114] (imputed)	N
1847	chr2	165504840	165504841	rs13391980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13391980-A	NR	1E-55		0.0693304	[0.061-0.078] unit decrease	Affymetrix [321169] (imputed)	N
1847	chr2	165504840	165504841	rs13391980	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	2q24.3	COBLL1	rs13391980-?	NR	7E-13		0.00956	[0.0066-0.0125] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1847	chr2	165505565	165505566	rs73013626	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs73013626-C	NR	2E-8		0.0374434	[0.024-0.051] unit increase	Affymetrix [321016] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs10184004-C	0.593897	5E-12		0.0283576	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q24.3		rs10184004-T	NR	2E-13		0.0734	[0.054-0.093] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q24.3	NR	rs10184004-C	0.5951	4E-54		0.0636	[0.056-0.072] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q24.3	COBLL1	rs10184004-?	NR	1E-11		0.0175	[0.013-0.022] unit decrease	Affymetrix [5701386] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	2q24.3	COBLL1	rs10184004-T	0.40760899	1E-33		0.0258405	[0.022-0.03] unit decrease	Affymetrix [9463307] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	2q24.3	COBLL1	rs10184004-T	0.40760899	2E-7		0.00390099	[0.0024-0.0054] unit decrease	Affymetrix [9463307] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	2q24.3	COBLL1	rs10184004-T	0.405503	8E-11		0.07686487	[0.054-0.1] unit decrease	Affymetrix [7288503] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q24.3	COBLL1, GRB14	rs10184004-T	0.4	2E-9		0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2q24.3		rs10184004-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q24.3	COBLL1	rs10184004-T	0.4314	7E-14		0.2046	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q24.3	intergenic	rs10184004-T	0.453	3E-29		0.0309	[0.025-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs10184004-C	NR	2E-24		0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs10184004-C	0.594	4E-19	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs10184004-C	NR	4E-19		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs10184004-C	0.594	2E-15	(EA)	0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165508388	165508389	rs10184004	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	2q24.3	GRB14, COBLL1	rs10184004-A		1E-7		0.0052	unit increase	Illumina [at least 200000]	N
1847	chr2	165509150	165509151	rs73013631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs73013631-T	NR	1E-9		0.0409381	[0.028-0.054] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165511793	165511794	rs10179126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q24.3	COBLL1	rs10179126-G	NR	9E-10		0.0203378	[0.014-0.027] unit increase	Affymetrix [323858] (imputed)	N
1847	chr2	165513065	165513066	rs34271465	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	2q24.3	FIGN, GRB14	rs34271465-?	0.41	1E-11		0.317	[0.22-0.42] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q24.3		rs10195252-C	NR	1E-16		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	50,404 European ancestry women	NA	2q24.3	COBLL1, GRB14	rs10195252-C	0.412606	1E-6		0.017697	[0.011-0.025] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	2q24.3	COBLL1, GRB14	rs10195252-C	0.412606	1E-6		0.012257	[0.0074-0.0172] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	2q24.3	NR	rs10195252-?	NR	2E-7		0.04902903	[0.03-0.068] unit decrease	Illumina [30305130] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood insulin	5,525 African American individuals, 12,687 Hispanic/Latino individuals, 1,547 Asian ancestry individuals, 1,397 Native Hawaiian ancestry individuals, 395 Native American ancestry individuals	NA	2q24.3	NR	rs10195252-?	NR	1E-7		0.05932476	[0.037-0.081] unit decrease	Illumina [28840767] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2q24.3	GRB14, COBLL1	rs10195252-T	0.92	4E-7		1.0869565	[1.05-1.12]	Illumina [12557761] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.3		rs10195252-?	NR	5E-55				NR [~ 8900000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q24.3	COBLL1	rs10195252-T	0.5704	5E-9		0.1156	[0.077-0.154] mmHg increase	Affymetrix [NR] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q24.3	NR	rs10195252-T	0.59	9E-69		0.031	[0.027-0.035] unit increase	Affymetrix [2446094] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q24.3	NR	rs10195252-T	0.59	5E-8				Affymetrix [2446094] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q24.3	GRB14, COBLL1	rs10195252-T	0.5864	6E-25		1.07	[1.06-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	7E-27	(women)	0.056	[0.046-0.066] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	6E-14	(EA)	0.0318	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	4E-24	(EA, women)	0.0554	[0.045-0.066] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	1E-15		0.0318	[0.024-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5919	8E-7	(women)	0.0559	[0.034-0.078] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5919	8E-7	(EA, women)	0.0559	[0.034-0.078] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	1E-12	(EA)	0.034	[0.025-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5938	1E-12		0.034	[0.025-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5934	5E-21	(women)	0.0577	[0.046-0.07] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5934	5E-21	(women)	0.0577	[0.046-0.07] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5934	5E-21	(EA, women)	0.0577	[0.046-0.07] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-?	0.5938	4E-14	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-?	0.5938	4E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-?	0.5938	2E-25	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-?	0.5938	2E-25	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5932	2E-13	(EA, women)	0.0378	[0.028-0.048] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5927	3E-12	(EA,women)	0.0398	[0.029-0.051] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q24.3	GRB14, COBLL1	rs10195252-?	0.5932	1E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.575	3E-6	(women)	0.0169	[0.0098-0.024] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.575	3E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.575	5E-11		0.0253	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.575	1E-22	(women)	0.0518	[0.041-0.062] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5727	3E-12	(women)	0.0398	[0.029-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5727	1E-13	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	GRB14, COBLL1	rs10195252-T	0.5727	9E-14	(women)	0.038	[0.028-0.048] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2q24.3	NR	rs10195252-T	0.590334060130194	4E-30				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q24.3	NR	rs10195252-T	0.590334060130194	3E-20				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q24.3	NR	rs10195252-T	0.590334060130194	6E-15		0.026324013	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5926	6E-15	(EA)	0.027	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5905	5E-30	(EA, women)	0.0519	[0.043-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5838	4E-16		0.0274	[0.021-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5807	2E-31	(women)	0.0524	[0.044-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5903	3E-9	(EA)	0.0199	[0.013-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1, GRB14	rs10195252-T	0.5903	1E-23	(EA, women)	0.0444	[0.036-0.053] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5919	4E-15	(EA,women)	0.0345	[0.026-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5909	1E-11	(EA, women)	0.031	[0.022-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs10195252-T	0.5909	1E-10	(EA)	0.0231	[0.016-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	2q24.3	GRB14	rs10195252-T	0.60	2E-24		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1847	chr2	165513090	165513091	rs10195252	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2q24.3	COBLL1	rs10195252-C	0.4	2E-10		2.01	[1.27-2.75] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	9E-19		0.0363352	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615511	1E-12		0.0298551	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	4E-12		0.0291079	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	2E-9		0.0250262	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615511	6E-12		0.0289807	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	8E-15		0.0320828	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	2E-10		0.0257074	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	8E-9		0.0249161	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	4E-21		0.0383844	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615235	5E-13		0.0300074	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	7E-20		0.0373945	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165514409	165514409	rs11394662	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs11394662-A	0.615241	6E-10		0.0261041	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165518798	165518799	rs75265117	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q24.3	COBLL1	rs75265117-C	0.88007	2E-25		0.0314966	[0.026-0.037] unit decrease	Affymetrix [NR] (imputed)	N
1847	chr2	165518798	165518799	rs75265117	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	2q24.3	COBLL1	rs75265117-?	NR	4E-15		0.01854	[0.012-0.025] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1847	chr2	165518798	165518799	rs75265117	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.3	NR	rs75265117-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1847	chr2	165524498	165524499	rs62173904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs62173904-A	NR	9E-18		0.0332864	[0.026-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165524498	165524499	rs62173904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs62173904-A	NR	3E-18		0.0337357	[0.026-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165524498	165524499	rs62173904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs62173904-A	NR	8E-17		0.033594	[0.026-0.042] unit increase	Affymetrix [321788] (imputed)	N
1847	chr2	165524498	165524499	rs62173904	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs62173904-A	NR	4E-10		0.0242345	[0.017-0.032] unit increase	Affymetrix [321016] (imputed)	N
1847	chr2	165524750	165524751	rs36105243	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q24.3		rs36105243-C	0.652878	1E-10		0.0262933	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607991	5E-31		0.0459631	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	4E-22		0.039395	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	9E-35		0.0492766	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-10		0.0261528	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-31		0.0472256	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	5E-14		0.0309597	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-28		0.0440995	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-18		0.0356598	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-24		0.041867	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-8		0.0231607	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-29		0.0458571	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-27		0.0446396	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	8E-22		0.0395772	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	7E-20		0.0378638	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-16		0.0343112	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-19		0.0374001	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-17		0.0352352	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	7E-20		0.0377599	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-22		0.0404368	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	2q24.3		rs1128249-G	0.60796	6E-12		0.0287496	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2q24.3		rs1128249-G	0.60796	3E-37		0.0499416	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q24.3		rs1128249-G	0.60796	2E-19		0.0365782	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-10		0.0262873	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607999	2E-27		0.04458	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	8E-10		0.0254698	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	4E-14		0.03187	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	8E-37		0.0513453	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2q24.3		rs1128249-G	0.60796	1E-17		0.0355909	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-17		0.0341959	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-24		0.0414424	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-27		0.0435363	[0.036-0.051] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-23		0.0415054	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-19		0.0376537	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607991	3E-8		0.0234704	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	8E-11		0.0268848	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	7E-30		0.0463586	[0.038-0.054] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	3E-15		0.0333044	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-11		0.0284664	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	2E-15		0.0331448	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	6E-33		0.0480801	[0.04-0.056] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	4E-14		0.0310389	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	7E-16		0.0331285	[0.025-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs1128249-G	0.607997	1E-12		0.0300557	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	2q24.3		rs1128249-T	0.3992	5E-8		0.0573	[0.037-0.078] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	2q24.3		rs1128249-T	0.3184	4E-7		0.0677	[0.041-0.094] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	2q24.3		rs1128249-T	0.4265	9E-18		0.0614	[0.047-0.076] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q24.3		rs1128249-T	NR	9E-24		0.0786	[0.063-0.094] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	8,101 African American individuals	NA	2q24.3	COBLL1	rs1128249-T	0.7248	3E-6		0.0463	[0.026-0.066] unit decrease	Affymetrix, Illumina [26320006] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	16,386 Hispanic individuals	NA	2q24.3	COBLL1	rs1128249-T	0.3024	2E-9		0.0445	[0.031-0.058] unit decrease	Affymetrix, Illumina [26195808] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs1128249-T	NR	3E-56		0.0457874	[0.04-0.051] unit decrease	Affymetrix [321114] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs1128249-T	NR	9E-65		0.0493826	[0.044-0.055] unit decrease	Affymetrix [321169] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q24.3	COBLL1	rs1128249-G	0.607945	2E-18		0.0045112	[0.0035-0.0055] unit increase	Affymetrix [13995440] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	4E-10				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	3E-16				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting insulin (pairwise)	374,012 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	2E-9				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and LDL-C (pairwise)	495,344 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	6E-11				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	2E-14				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	3E-11				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	4E-21				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting insulin (pairwise)	142,394 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	8E-11				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	1E-14				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	2q24.3	GRB14-COBLL1	rs1128249-T	0.4344	1E-16				Affymetrix, Illumina [2331072] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q24.3	COBLL1	rs1128249-T	0.3919	3E-25		0.0199	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q24.3	NR	rs1128249-T	0.392683	4E-13		0.00940047	[0.0068-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q24.3	NR	rs1128249-T	0.392363	1E-73		0.0216556	[0.019-0.024] unit increase	Affymetrix [16585854] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q24.3	NR	rs1128249-T	0.392363	6E-35		0.0170738	[0.014-0.02] unit increase	Affymetrix [16585866] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	2q24.3	GRB14	rs1128249-?	NR	2E-9				NR [5554549] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage	341,632 European ancestry individuals	NA	2q24.3	GRB14	rs1128249-?	NR	2E-18				NR [5554549] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	2q24.3	NR	rs1128249-?	NR	6E-8		0.05135181	[0.033-0.07] unit decrease	Illumina [30305130] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	4E-18				Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	4E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	4E-19				Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	3E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	7E-10	(EA)	0.015	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	2E-11		0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	6E-6	(EA)	0.016	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	3E-7		0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	6E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	1E-16				Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	5E-22				Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	1E-23	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	8E-25				Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q24.3	GRB14, COBLL1	rs1128249-T	NR	3E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	2E-13	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	1E-10		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q24.3	GRB14, COBLL1	rs1128249-T	NR	1E-6	(EA)	0.007858	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q24.3	NR	rs1128249-?	NR	7E-7	(male)	0.13171	[0.08-0.184] unit increase	Affymetrix [7794483] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q24.3	NR	rs1128249-?	NR	4E-13		0.15706	[0.11-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q24.3	NR	rs1128249-?	NR	1E-7	(female)	0.18604	[0.12-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	2q24.3	COBLL1	rs1128249-T	0.4052	2E-6		0.0431	[0.025-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs1128249-T	0.4179	3E-9	(women)	0.0203	[0.014-0.027] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs1128249-T	0.4179	2E-9	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs1128249-T	0.4179	8E-16		0.029	[0.022-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs1128249-T	0.4179	4E-28	(women)	0.0515	[0.042-0.061] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q24.3	COBLL1	rs1128249-T	0.3916	5E-10		0.02279537	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs1128249-G	0.5973	2E-15	(EA)	0.0276	[0.021-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs1128249-G	0.5949	2E-29	(EA, women)	0.052	[0.043-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs1128249-G	0.5884	1E-16		0.0283	[0.022-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165528623	165528624	rs1128249	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs1128249-G	0.5846	5E-31	(women)	0.0526	[0.044-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607457	8E-18		0.0353512	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	9E-16		0.0338939	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-36		0.0506226	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-33		0.049162	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-28		0.0454774	[0.037-0.054] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-31		0.0474437	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-32		0.0485377	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-34		0.0496211	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-33		0.0485917	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-35		0.0506342	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-19		0.0339588	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	5E-18		0.0362703	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-32		0.0482706	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	9E-22		0.0355411	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-35		0.0500596	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	9E-29		0.0460123	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	7E-13		0.0299221	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	3E-18		0.0354489	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	9E-21		0.0378446	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	3E-21		0.038325	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	4E-12		0.028269	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607462	7E-14		0.0290599	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-16		0.0344367	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-10		0.0268705	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-28		0.044606	[0.037-0.052] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-15		0.0327233	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-35		0.0503657	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-18		0.0335577	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-13		0.0301842	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	5E-34		0.0494857	[0.042-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	9E-20		0.0338071	[0.027-0.041] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-25		0.043106	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607462	2E-17		0.0317702	[0.024-0.039] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	6E-34		0.0489245	[0.041-0.057] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-18		0.0326975	[0.025-0.04] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	6E-34		0.0496128	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-16		0.0317312	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-33		0.0486965	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-21		0.0353216	[0.028-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-35		0.0504882	[0.043-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-21		0.0400262	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607426	4E-8		0.0221216	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-35		0.0505375	[0.043-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-16		0.0310421	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	6E-14		0.0316067	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-33		0.0490978	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-22		0.0359338	[0.029-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	5E-36		0.0508694	[0.043-0.059] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607854	2E-22		0.0393816	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	5E-16		0.0342249	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-23		0.0389122	[0.031-0.047] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-18		0.0371031	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-27		0.0437587	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-13		0.0302109	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-25		0.0435677	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-23		0.0378213	[0.03-0.045] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	2E-23		0.0416227	[0.033-0.05] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	8E-27		0.0400523	[0.033-0.047] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-33		0.0493322	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607854	6E-21		0.0379541	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-28		0.0437611	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-30		0.047146	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-22		0.0368708	[0.029-0.044] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-28		0.0457622	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-25		0.039025	[0.032-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	4E-35		0.0502993	[0.042-0.058] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	7E-33		0.0470479	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	3E-10		0.0260738	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2q24.3		rs13389219-C	0.607468	1E-20		0.0349431	[0.028-0.042] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q24.3		rs13389219-T	NR	1E-32		0.0282	[0.023-0.033] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q24.3		rs13389219-T	NR	5E-11		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q24.3		rs13389219-T	NR	3E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-T	0.392	6E-28		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13389219-T	NR	7E-125		0.0682543	[0.063-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13389219-T	NR	5E-127		0.0688624	[0.063-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13389219-T	NR	3E-59		0.0485284	[0.043-0.054] unit increase	Affymetrix [321788] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13389219-T	NR	1E-46		0.0411266	[0.036-0.047] unit increase	Affymetrix [321016] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	4E-84		0.038	mmol/L decrease	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	6E-48		0.027	nmol/L increase	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	7E-127				NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	5E-51		0.027	mmol/L increase	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	2E-29		0.017	% increase	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	1E-7		0.01	U/L decrease	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	2q24.3		rs13389219-T	0.39	5E-30		0.023	U/L decrease	NR [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2q24.3	COBLL1	rs13389219-C	0.607419	2E-30		0.00454003	[0.0038-0.0053] unit increase	Affymetrix [13995440] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.3928	1E-10		0.00139	[0.00094-0.00184] unit decrease	Affymetrix [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2q24.3	COBLL1	rs13389219-T	0.41	7E-11		0.08	[0.056-0.104] unit increase	Illumina [92057]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2q24.3	COBLL1	rs13389219-T	0.41	3E-15		0.053	[0.039-0.067] unit increase	Illumina [232237]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		2q24.3	COBLL1	rs13389219-T	0.394	1E-9		0.081	[0.056-0.106] unit increase	Illumina [54056]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		2q24.3	COBLL1	rs13389219-T	0.394	1E-13		0.053	[0.039-0.067] unit increase	Illumina [204609]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2q24.3	COBLL1	rs13389219-T	0.405	4E-7		0.08	[0.049-0.111] unit increase	Illumina [86054]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2q24.3	COBLL1	rs13389219-T	0.405	2E-9		0.052	[0.034-0.07] unit increase	Illumina [227473]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		2q24.3	COBLL1	rs13389219-T	0.392	4E-9		0.055	[0.037-0.073] unit increase	Illumina [193169]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		2q24.3	COBLL1	rs13389219-T	0.392	2E-7		0.093	[0.058-0.128] unit increase	Illumina [49530]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	23,822 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		2q24.3	COBLL1	rs13389219-T	0.417	4E-7		0.052	[0.032-0.072] unit increase	Illumina [220721]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	21,883 European ancestry men		2q24.3	COBLL1	rs13389219-T	0.395	5E-6		0.048	[0.026-0.07] unit increase	Illumina [185190]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2q24.3	COBLL1	rs13389219-T	0.41	3E-7		0.062	[0.038-0.086] unit increase	Illumina [92082]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		2q24.3	COBLL1	rs13389219-T	0.41	1E-12		0.048	[0.034-0.062] unit increase	Illumina [232255]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		2q24.3	COBLL1	rs13389219-T	0.394	7E-11		0.046	[0.032-0.06] unit increase	Illumina [204641]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		2q24.3	COBLL1	rs13389219-T	0.394	5E-6		0.061	[0.036-0.086] unit increase	Illumina [54083]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		2q24.3	COBLL1	rs13389219-T	0.405	6E-6		0.04	[0.022-0.058] unit increase	Illumina [227495]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	23,861 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		2q24.3	COBLL1	rs13389219-T	0.417	7E-6		0.085	[0.048-0.122] unit increase	Illumina [60771]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	23,861 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American men		2q24.3	COBLL1	rs13389219-T	0.417	1E-8		0.059	[0.039-0.079] unit increase	Illumina [220735]	N
1847	chr2	165528875	165528876	rs13389219	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	21,921 European ancestry men		2q24.3	COBLL1	rs13389219-T	0.395	7E-8		0.057	[0.035-0.079] unit increase	Illumina [185219]	N
1847	chr2	165528875	165528876	rs13389219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q24.3	COBLL1	rs13389219-T	0.39262	5E-15		0.01756527	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q24.3	COBLL1	rs13389219-T	0.392581	6E-14		0.017090563	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q24.3	COBLL1	rs13389219-T	0.392615	7E-18		0.019438086	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q24.3	COBLL1	rs13389219-T	0.392616	3E-13		0.016424624	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.331526	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.39268	3E-18		0.016381	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.392884	6E-11		0.012605	[0.0088-0.0164] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.334042	3E-17				Affymetrix, Illumina [24653286] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.392957	3E-20		0.017395	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.335979	5E-11				Affymetrix, Illumina [24558453] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.392769	6E-14		0.014148	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q24.3	NR	rs13389219-C	0.6033	7E-44		0.0648	[0.056-0.074] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	2q24.3	COBLL1	rs13389219-?	NR	1E-8				NR [NR]	N
1847	chr2	165528875	165528876	rs13389219	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-T		1E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-C	0.607449	8E-76		0.0374229	[0.033-0.041] unit increase	Affymetrix [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-C	0.607381	8E-46		0.0276526	[0.024-0.031] unit decrease	Affymetrix [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-C	0.607428	2E-14		0.0162802	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q24.3	COBLL1	rs13389219-?	NR	3E-43		0.0367	[0.032-0.041] unit decrease	Affymetrix [5701386] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.393278	2E-88		0.0159608	[0.014-0.018] unit increase	Affymetrix [16582909] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q24.3	NR	rs13389219-T	0.393686	2E-26		0.0115226	[0.0092-0.0138] unit increase	Affymetrix [16582621] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q24.3	NR	rs13389219-T	0.393278	6E-53		0.0137302	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q24.3	NR	rs13389219-T	0.393686	9E-21		0.0111467	[0.0087-0.0136] unit increase	Affymetrix [16582614] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	2q24.3	NR	rs13389219-?	NR	6E-8		0.05127342	[0.033-0.07] unit decrease	Illumina [30305130] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q24.3		rs13389219-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q24.3		rs13389219-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q24.3	COBLL1	rs13389219-T	0.394367937714495	2E-22		0.0722	[0.058-0.087] unit decrease	NR [5035015] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q24.3	COBLL1	rs13389219-T	0.3919	1E-11		0.02485962	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Waist-hip ratio	4,774 European ancestry high waist-to-hip ratio individuals, 5,481 European ancestry low waist-to-hip ratio individuals	3,351 European ancestry high waist-to-hip ratio individuals, 3,352 European ancestry low waist-to-hip ratio individuals	2q24.3	COBLL1	rs13389219-C	0.57	3E-8		1.13	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1847	chr2	165528875	165528876	rs13389219	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q24.3	GRB14	rs13389219-C	0.600895198408045	1E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1847	chr2	165529238	165529238	rs542639033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q24.3	COBLL1	rs542639033-AAAT	0.330506	2E-9		0.014420695	[0.0097-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1847	chr2	165532453	165532454	rs10187501	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs10187501-A	0.654736	5E-18		0.0354404	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
1847	chr2	165532453	165532454	rs10187501	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs10187501-A	0.654736	6E-17		0.0346421	[0.027-0.043] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165532453	165532454	rs10187501	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs10187501-A	0.654736	2E-20		0.0379324	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
1847	chr2	165532453	165532454	rs10187501	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2q24.3	COBLL1	rs10187501-G	0.346097	2E-11		0.0465591	[0.033-0.06] unit decrease	Affymetrix [9463307] (imputed)	N
1847	chr2	165534346	165534347	rs111770209	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Diastolic blood pressure	815 African ancestry early adolescents	NA	2q24.3	COBLL	rs111770209-T	0.94	5E-7		3.82	[-10.9388-18.5788] unit decrease	Illumina [20074711] (imputed)	N
1847	chr2	165537091	165537092	rs76383094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs76383094-T	NR	2E-9		0.0661644	[0.045-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165537091	165537092	rs76383094	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs76383094-T	NR	2E-9		0.0664575	[0.045-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	2q24.3		rs6717858-T	0.598466	3E-8		0.0234697	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	2q24.3		rs6717858-T	0.598466	4E-9		0.0247858	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	2q24.3		rs6717858-T	0.598466	5E-8		0.0231031	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q24.3	COBLL1	rs6717858-C	NR	5E-12		0.0217744	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	2q24.3	COBLL1	rs6717858-?	NR	4E-12		0.01317	[0.0091-0.0173] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	2q24.3	COBLL1	rs6717858-T	0.585	4E-6		0.0417	[0.024-0.059] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2q24.3	COBLL1, SNORA70F, GRB14, SLC38A11, SCN3A	rs6717858-T	0.5886	1E-29				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q24.3	COBLL1	rs6717858-T	0.59	4E-21				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	2q24.3	COBLL1, SNORA70F, GRB14, SLC38A11, SCN3A	rs6717858-T	0.588547001743291	1E-16	(women)	0.0483	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	2q24.3	SNORA70F, GRB14, SLC38A11, SCN3A, COBLL1	rs6717858-T	0.59	1E-16	(women)	0.062	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q24.3	COBLL1, SNORA70F, GRB14, SLC38A11, CN3A	rs6717858-T	0.588547	2E-13		0.0483	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1847	chr2	165539660	165539661	rs6717858	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	2q24.3	GRB14, COBLL1, SNORA70F	rs6717858-T		6E-16	(WHRadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q24.3	NR	rs12328675-C	0.120107	6E-12		0.021237	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	2q24.3		rs12328675-T	0.8665	6E-10		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q24.3	NR	rs12328675-T	0.8702	3E-44		0.0366	[0.032-0.042] unit increase	NR [~ 27400000] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q24.3	NA	rs12328675-T	0.8692	8E-10		0.0152	[0.01-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs12328675-T	NR	5E-18		0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs12328675-T	0.872	3E-15	(EA)	0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs12328675-T	NR	3E-18		0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q24.3	NR	rs12328675-T	0.872	2E-16	(EA)	0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q24.3	COBLL1	rs12328675-C	0.13	2E-15		0.045	[NR] unit increase	NR [NR] (imputed)	N
1847	chr2	165540799	165540800	rs12328675	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2q24.3	COBLL1	rs12328675-C	0.13	3E-10		0.68	[0.44-0.92] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1847	chr2	165541307	165541308	rs11558901	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs11558901-T	NR	2E-9		0.0405549	[0.027-0.054] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q24.3	COBLL1, GRB14	rs6738627-A	0.37	6E-9		0.03	[0.02-0.04] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q24.3	COBLL1, GRB14	rs6738627-A	0.37	5E-6	(European men)	0.034	[0.02-0.048] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q24.3	COBLL1, GRB14	rs6738627-A	0.37	2E-8	(European)	0.03	[0.02-0.04] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q24.3	COBLL1, GRB14	rs6738627-A	0.37	2E-6	(men)	0.035	[0.021-0.049] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	2q24.3	COBLL1	rs6738627-A	0.37	2E-6		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1848	chr2	165544449	165544450	rs6738627	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	2q24.3	COBLL1	rs6738627-A	0.37	1E-6		0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1848	chr2	165544573	165544573	rs200472737	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q24.3	COBLL1	rs200472737-G	NR	3E-12		0.021949	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165545373	165545373	rs10630427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q24.3	COBLL1	rs10630427-CAA	0.402162	3E-9		0.0134078255	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1848	chr2	165547354	165547355	rs115743734	30026463	Sahibdeen V	2018-07-19	Nutr Diabetes	Genetic variants in SEC16B are associated with body composition in black South Africans.	Body composition traits	1,421 South African ancestry females, 505 South African ancestry males	NA	2q24.3	COBLL1	rs115743734-A	0.01	6E-9	(M, Waist-to-hip ratio)	0.09	[0.07-0.11] unit increase	Illumina [125878]	N
1848	chr2	165548568	165548569	rs10490694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2q24.3	COBLL1	rs10490694-A	0.119	1E-9		0.03227717	[0.022-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs7607980-T	NR	2E-8		1.11	NR	NR [8016731] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA		COBLL1	rs7607980-?		2E-10		0.0626	[0.043-0.082] unit decrease	Illumina [31500000] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls		COBLL1	rs7607980-?	NR	2E-10		0.008511	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Triglyceride levels	29,902 European ancestry individuals	NA			rs7607980-C	0.12	2E-8		5.09	[3.31-6.87] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA			rs7607980-T	0.8674	2E-10		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women		COBLL1	rs7607980-T	0.8781	7E-39		0.0623	[0.053-0.072] unit increase	Affymetrix, Illumina [at least 228985]	N
1848	chr2	165551200	165551201	rs7607980	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women		COBLL1	rs7607980-T	0.8774	2E-37		0.0634	[0.054-0.073] unit increase	Affymetrix, Illumina [at least 228985]	N
1848	chr2	165551200	165551201	rs7607980	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals		COBLL1	rs7607980-T	0.8791	2E-13		0.0262	[0.019-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1848	chr2	165551200	165551201	rs7607980	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals		COBLL1	rs7607980-T	0.8783	3E-13		0.0266	[0.02-0.034] unit increase	Affymetrix, Illumina [at least 228985]	N
1848	chr2	165551200	165551201	rs7607980	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA		NR	rs7607980-T	0.8696	1E-21		0.0247	[0.02-0.03] unit increase	NR [~ 27400000] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA		GRB14	rs7607980-T	0.881	7E-19		1.09	[1.07-1.12]	Affymetrix, Illumina [247470]	N
1848	chr2	165551200	165551201	rs7607980	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA		GRB14	rs7607980-T	0.879	5E-23		1.09	[1.07-1.12]	Affymetrix, Illumina [247470]	N
1848	chr2	165551200	165551201	rs7607980	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA		GRB14	rs7607980-T	0.881	5E-15		1.09	[1.06-1.11]	Affymetrix, Illumina [247470]	N
1848	chr2	165551200	165551201	rs7607980	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA		GRB14	rs7607980-T	0.879	9E-20		1.08	[1.06-1.11]	Affymetrix, Illumina [247470]	N
1848	chr2	165551200	165551201	rs7607980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA		NR	rs7607980-T	NR	5E-18		0.05	unit increase	Affymetrix [at least 7091467] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA		NR	rs7607980-T	0.873	1E-15	(EA)	0.049	unit increase	Affymetrix [at least 7091467] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA		NR	rs7607980-T	NR	2E-17		0.045	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA		NR	rs7607980-T	0.873	2E-16	(EA)	0.046	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls		intergenic	rs7607980-C	0.1541	2E-9	(EA)	0.0927	[0.063-0.123] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA		GRB14	rs7607980-C	0.132599438204585	6E-11		0.026085194	[0.018-0.034] unit decrease	Illumina [197481]	N
1848	chr2	165551200	165551201	rs7607980	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA		COBLL1	rs7607980-C	NR	7E-8		0.03	[0.018-0.042] unit decrease	Illumina [106489]	N
1848	chr2	165551200	165551201	rs7607980	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals		COBLL1, GRB14	rs7607980-T	0.8759	4E-20		0.00329	[0.0018-0.0048] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1848	chr2	165551200	165551201	rs7607980	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals		COBLL1/GRB14	rs7607980-T	0.8821	3E-7		0.0203	[0.013-0.028] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1848	chr2	165552706	165552706	rs10649609	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2q24.3	NR	rs10649609-AAAAAT	0.36983299999999997	4E-8		0.0174115	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
1848	chr2	165552706	165552706	rs10649609	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2q24.3	COBLL1	rs10649609-AAAAAT	0.3683	2E-14		0.02852881	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1848	chr2	165554301	165554302	rs78970517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs78970517-T	NR	2E-24		0.0462976	[0.037-0.055] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165554308	165554309	rs12692737	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	2q24.3	NR	rs12692737-?	NR	9E-7		0.04645022	[0.028-0.065] unit decrease	Illumina [30305130] (imputed)	N
1848	chr2	165554308	165554309	rs12692737	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs12692737-A	0.3083	5E-8	(women)	0.0298	[0.019-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165554308	165554309	rs12692737	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692737-A	0.3162	1E-10	(women)	0.0319	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165554308	165554309	rs12692737	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692737-A	0.3003	4E-10	(EA, women)	0.0319	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165555538	165555539	rs79953491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q24.3		rs79953491-G	NR	2E-30		0.0402	[0.033-0.047] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1848	chr2	165557317	165557318	rs6712203	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q24.3	COBLL1	rs6712203-C	0.63	3E-17		8.46	z-score increase	Affymetrix [4312306] (imputed)	N
1848	chr2	165557317	165557318	rs6712203	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q24.3	AC019181.3	rs6712203-C	0.6276999999999999	2E-11		0.2092	[0.15-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1848	chr2	165557317	165557318	rs6712203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q24.3	COBLL1	rs6712203-T	0.3678	3E-12		0.02611819	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1848	chr2	165558214	165558215	rs566596164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q24.3	COBLL1	rs566596164-C	NR	1E-8		0.0274334	[0.018-0.037] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	2q24.3	COBLL1	rs12692738-T	0.7641	3E-8		0.0486	[0.031-0.066] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	7E-86		0.0665577	[0.06-0.073] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	2E-88		0.0675525	[0.061-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	7E-47		0.0491641	[0.042-0.056] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	7E-28		0.0386172	[0.032-0.046] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	5E-22		0.0326413	[0.026-0.039] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12692738-C	NR	9E-55		0.0534285	[0.047-0.06] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q24.3	COBLL1	rs12692738-C	NR	8E-9		0.0214469	[0.014-0.029] unit increase	Affymetrix [323858] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q24.3	NR	rs12692738-C	0.226452	8E-9		0.0674461	[0.045-0.09] unit decrease	Affymetrix [21375087] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	2q24.3	COBLL1	rs12692738-T	0.23	2E-7		1.12	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	2q24.3	NR	rs12692738-T	0.7622	5E-19	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs12692738-T	0.7339	4E-7	(women)	0.0206	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs12692738-T	0.7339	4E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs12692738-T	0.7339	4E-12		0.0286	[0.021-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q24.3	COBLL1	rs12692738-T	0.7339	3E-22	(women)	0.0525	[0.042-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692738-T	0.7618	8E-11	(EA)	0.0262	[0.018-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692738-T	0.7603	4E-23	(EA, women)	0.0527	[0.042-0.063] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692738-T	0.7426	2E-11		0.0262	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165558251	165558252	rs12692738	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	COBLL1	rs12692738-T	0.7413	4E-23	(women)	0.0512	[0.041-0.061] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165559100	165559101	rs115631825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115631825-G	NR	4E-22		0.0637517	[0.051-0.077] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165559100	165559101	rs115631825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115631825-G	NR	3E-22		0.0640764	[0.051-0.077] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165559100	165559101	rs115631825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115631825-G	NR	8E-13		0.0476131	[0.035-0.061] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165559100	165559101	rs115631825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115631825-G	NR	3E-15		0.0525621	[0.039-0.066] unit increase	Affymetrix [321169] (imputed)	N
1848	chr2	165559100	165559101	rs115631825	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs115631825-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165559842	165559843	rs73013656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs73013656-A	NR	2E-14		0.058979	[0.044-0.074] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165559842	165559843	rs73013656	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs73013656-A	NR	6E-15		0.0602952	[0.045-0.075] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165562606	165562607	rs115862987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115862987-T	NR	7E-11		0.0535006	[0.037-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165562606	165562607	rs115862987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115862987-T	NR	8E-11		0.0533002	[0.037-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165562606	165562607	rs115862987	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs115862987-T	NR	4E-8		0.0449278	[0.029-0.061] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	2E-71		0.0513149	[0.046-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	1E-73		0.0521181	[0.046-0.058] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	1E-36		0.0365914	[0.031-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	2E-31		0.0348842	[0.029-0.041] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	2E-22		0.0279089	[0.022-0.034] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165562892	165562893	rs13017482	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs13017482-C	NR	2E-40		0.0386169	[0.033-0.044] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165565547	165565548	rs3769872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769872-T	NR	9E-21		0.0556685	[0.044-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165565547	165565548	rs3769872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769872-T	NR	2E-14		0.0458797	[0.034-0.058] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165565547	165565548	rs3769872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769872-T	NR	5E-14		0.0454388	[0.034-0.057] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165565582	165565583	rs3769873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q24.3		rs3769873-G	0.065158179	9E-11		0.122809455	[0.086-0.16] unit decrease	Illumina [13429769] (imputed)	N
1848	chr2	165565582	165565583	rs3769873	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769873-G	NR	2E-20		0.055145	[0.043-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165566876	165566877	rs3820981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3820981-G	NR	2E-33		0.0342819	[0.029-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165566876	165566877	rs3820981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3820981-G	NR	3E-34		0.034765	[0.029-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165566876	165566877	rs3820981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3820981-G	NR	1E-16		0.0245737	[0.019-0.03] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165566876	165566877	rs3820981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3820981-G	NR	2E-13		0.02087	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165566876	165566877	rs3820981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3820981-G	NR	1E-18		0.0253552	[0.02-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165567076	165567077	rs11307875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q24.3		rs11307875-C	NR	1E-9		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1848	chr2	165567119	165567120	rs141402519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs141402519-T	NR	2E-9		0.0469307	[0.032-0.062] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165567119	165567120	rs141402519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs141402519-T	NR	9E-9		0.0451051	[0.03-0.061] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165567694	165567695	rs6705646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs6705646-A	NR	1E-72		0.0515414	[0.046-0.057] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165567694	165567695	rs6705646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs6705646-A	NR	3E-37		0.0367637	[0.031-0.042] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165567694	165567695	rs6705646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs6705646-A	NR	6E-43		0.0397404	[0.034-0.045] unit increase	Affymetrix [321169] (imputed)	N
1848	chr2	165567694	165567695	rs6705646	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs6705646-?	NR	8E-48				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165567694	165567695	rs6705646	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.3	NR	rs6705646-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165569778	165569779	rs3769877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769877-G	NR	2E-13		0.0309937	[0.023-0.039] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165569778	165569779	rs3769877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769877-G	NR	7E-14		0.0315611	[0.023-0.04] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165569778	165569779	rs3769877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769877-G	NR	2E-8		0.0238333	[0.015-0.032] unit increase	Affymetrix [321169] (imputed)	N
1848	chr2	165572080	165572081	rs1869525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs1869525-C	NR	3E-16		0.0234555	[0.018-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165573193	165573194	rs13024606	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q24.3	GRB14, COBLL1	rs13024606-T	0.0472	2E-8		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1848	chr2	165573701	165573702	rs7586858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs7586858-T	NR	2E-16		0.0332519	[0.025-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165573701	165573702	rs7586858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs7586858-T	NR	5E-17		0.0338175	[0.026-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165573701	165573702	rs7586858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs7586858-T	NR	3E-10		0.025742	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165573701	165573702	rs7586858	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs7586858-T	NR	8E-12		0.0278919	[0.02-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165573701	165573702	rs7586858	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.3	NR	rs7586858-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165573971	165573972	rs183108549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs183108549-G	NR	9E-16		0.0935671	[0.071-0.116] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165573971	165573972	rs183108549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs183108549-G	NR	2E-10		0.0751	[0.052-0.098] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165573971	165573972	rs183108549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs183108549-G	NR	5E-12		0.0813034	[0.058-0.104] unit increase	Affymetrix [321169] (imputed)	N
1848	chr2	165575783	165575784	rs11896289	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs11896289-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	8E-46		0.0632106	[0.054-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	5E-47		0.0640854	[0.055-0.073] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	6E-29		0.0501131	[0.041-0.059] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	3E-12		0.0323238	[0.023-0.041] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	2E-9		0.0266694	[0.018-0.035] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs10221833-C	NR	2E-32		0.0534144	[0.045-0.062] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	2E-17		0.0319	[0.025-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	4E-12		0.0273	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	4E-16		0.0318	[0.024-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	1E-14		0.0302	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	3E-9		0.0223	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q24.3	NR	rs10221833-C	NR	3E-10		0.0235	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1848	chr2	165577163	165577164	rs10221833	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q24.3	GRB14, COBLL1, LOC728184	rs10221833-C	0.09	6E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
1848	chr2	165578601	165578602	rs74459242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs74459242-T	NR	2E-9		0.0389896	[0.026-0.052] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165578601	165578602	rs74459242	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs74459242-T	NR	1E-9		0.0396152	[0.027-0.052] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165588543	165588544	rs140746906	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q24.3	NR	rs140746906-T	0.0118682	2E-6		1.066	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1848	chr2	165592389	165592390	rs3769885	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	2q24.3	COBLL1, GRB14, SNORA70F, SLC38A11, SCN3A	rs3769885-A	0.48	4E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165592389	165592390	rs3769885	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age>50)	up to 90,988 European ancestry men, up to 106,622 European ancestry women	NA	2q24.3	COBLL1, GRB14, SNORA70F, SLC38A11, SCN3A	rs3769885-A	0.48	4E-9		0.02	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165592389	165592390	rs3769885	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q24.3	COBLL1, GRB14, SNORA70F, SLC38A11, SCN3A	rs3769885-A	0.48	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	1E-53		0.0498795	[0.044-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	2E-55		0.0507406	[0.044-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	1E-33		0.0394201	[0.033-0.046] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	8E-14		0.0251516	[0.019-0.032] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	1E-10		0.0207834	[0.014-0.027] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165602180	165602181	rs3769891	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs3769891-G	NR	2E-38		0.0424689	[0.036-0.049] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs113238768-A	NR	3E-16		0.0393179	[0.03-0.049] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs113238768-A	NR	4E-17		0.0404189	[0.031-0.05] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs113238768-A	NR	5E-8		0.0264909	[0.017-0.036] unit increase	Affymetrix [321114] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs113238768-A	NR	1E-8		0.0285199	[0.019-0.038] unit decrease	Affymetrix [321788] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs113238768-A	NR	3E-9		0.028732	[0.019-0.038] unit increase	Affymetrix [321169] (imputed)	N
1848	chr2	165604220	165604221	rs113238768	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs113238768-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165610497	165610498	rs430419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs430419-C	NR	7E-75		0.0528227	[0.047-0.058] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165610497	165610498	rs430419	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs430419-C	NR	8E-31		0.034665	[0.029-0.041] unit decrease	Affymetrix [321788] (imputed)	N
1848	chr2	165611361	165611362	rs404682	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs404682-G	NR	5E-14		0.022407	[0.017-0.028] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165619162	165619163	rs355838	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs355838-T	0.3993	2E-9	(EA)	0.0217	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165619162	165619163	rs355838	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q24.3	GRB14, COBLL1	rs355838-T	0.3993	2E-7	(EA,women)	0.0248	[0.016-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1848	chr2	165620174	165620175	rs12616012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs12616012-G	NR	2E-10		0.0395452	[0.027-0.052] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165620304	165620305	rs16849728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs16849728-G	NR	6E-20		0.0544636	[0.043-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165620304	165620305	rs16849728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs16849728-G	NR	1E-20		0.0555237	[0.044-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165620304	165620305	rs16849728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs16849728-G	NR	2E-11		0.040198	[0.028-0.052] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165620304	165620305	rs16849728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs16849728-G	NR	5E-11		0.039498	[0.028-0.051] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165620304	165620305	rs16849728	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs16849728-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165630459	165630460	rs355865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q24.3	COBLL1	rs355865-T	NR	2E-9		0.0191245	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1848	chr2	165636331	165636332	rs355897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355897-C	NR	6E-51		0.042628	[0.037-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165636331	165636332	rs355897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355897-C	NR	2E-52		0.0432414	[0.038-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165636331	165636332	rs355897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355897-C	NR	1E-29		0.0323633	[0.027-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165636331	165636332	rs355897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355897-C	NR	5E-36		0.0359876	[0.03-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165638069	165638070	rs355900	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355900-T	NR	4E-25		0.0299585	[0.024-0.036] unit decrease	Affymetrix [321016] (imputed)	N
1848	chr2	165644544	165644545	rs355909	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355909-C	NR	7E-13		0.0203267	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165647331	165647332	rs355910	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	2q24.3		rs355910-?	NR	1E-8		0.00523892	[0.0034-0.007] unit increase	NR [NR]	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	2E-40		0.0378201	[0.032-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	1E-41		0.0384177	[0.033-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	2E-20		0.0266332	[0.021-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	6E-16		0.0239633	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	6E-14		0.021352	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
1848	chr2	165647331	165647332	rs355910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355910-T	NR	1E-24		0.0294251	[0.024-0.035] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165647340	165647341	rs355911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355911-A	NR	3E-26		0.0356211	[0.029-0.042] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165647340	165647341	rs355911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355911-A	NR	3E-27		0.0363443	[0.03-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1848	chr2	165647340	165647341	rs355911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355911-A	NR	7E-17		0.0282567	[0.022-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1848	chr2	165647340	165647341	rs355911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355911-A	NR	5E-21		0.0319549	[0.025-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1848	chr2	165647340	165647341	rs355911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs355911-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165647340	165647341	rs355911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q24.3	NR	rs355911-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1848	chr2	165656786	165656787	rs355914	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q24.3	NA	rs355914-C	0.6317	7E-11		0.0108	[0.0075-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1848	chr2	165657254	165657255	rs181031465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs181031465-T	NR	2E-16		0.0997077	[0.076-0.124] unit increase	Affymetrix [319769] (imputed)	N
1848	chr2	165667642	165667643	rs409125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.3	NA	rs409125-A	0.628	2E-23		0.0182	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1849	chr2	165682945	165682946	rs355808	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	2q24.3	COBLL1	rs355808-?	NR	6E-6			NR	Illumina [up to 317503]	N
1849	chr2	165685645	165685646	rs355810	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q24.3	COBLL1	rs355810-A	0.62	1E-6		0.015	[0.0089-0.0207] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1849	chr2	165685645	165685646	rs355810	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q24.3	COBLL1	rs355810-A	0.617	5E-6	(EA)	0.014	[0.0081-0.0203] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1849	chr2	165694897	165694898	rs355799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355799-T	NR	6E-22		0.0381512	[0.03-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165694897	165694898	rs355799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355799-T	NR	1E-22		0.0386975	[0.031-0.046] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165694897	165694898	rs355799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355799-T	NR	2E-15		0.0316266	[0.024-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1849	chr2	165694897	165694898	rs355799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	COBLL1	rs355799-T	NR	2E-17		0.0340796	[0.026-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165705905	165705906	rs422461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs422461-G	NR	3E-10		0.0196438	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165705905	165705906	rs422461	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs422461-G	NR	2E-10		0.0199331	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165707854	165707855	rs355818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355818-G	NR	7E-10		0.0283541	[0.019-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165707854	165707855	rs355818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355818-G	NR	3E-10		0.0288569	[0.02-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165707854	165707855	rs355818	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355818-G	NR	5E-8		0.0253725	[0.016-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165708791	165708792	rs355817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355817-C	NR	1E-24		0.0287556	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165708791	165708792	rs355817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355817-C	NR	2E-25		0.0292942	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165708791	165708792	rs355817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355817-C	NR	2E-10		0.0179485	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1849	chr2	165708791	165708792	rs355817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355817-C	NR	1E-12		0.0202069	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165709550	165709551	rs355814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355814-G	NR	5E-20		0.0282261	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165709550	165709551	rs355814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355814-G	NR	8E-21		0.0288178	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165709550	165709551	rs355814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355814-G	NR	3E-11		0.0206946	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1849	chr2	165709550	165709551	rs355814	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	AC019181.2	rs355814-G	NR	3E-14		0.0236733	[0.018-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165710109	165710110	rs7569506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q24.3		rs7569506-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1849	chr2	165710539	165710540	rs143000161	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	2q24.3	SLC38A11, COBLL1	rs143000161-A	0.92	2E-6	(Left HG thickness)	0.0566	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1849	chr2	165719733	165719734	rs355801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs355801-A	NR	1E-14		0.0225682	[0.017-0.028] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165719733	165719734	rs355801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs355801-A	NR	1E-12		0.0200158	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1849	chr2	165724347	165724348	rs1509105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs1509105-C	NR	3E-10		0.0243806	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165724347	165724348	rs1509105	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs1509105-C	NR	2E-10		0.0246935	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs2390124-T	NR	3E-18		0.0257937	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs2390124-T	NR	2E-18		0.0259521	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs2390124-T	NR	9E-14		0.0229241	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs2390124-T	NR	5E-11		0.019382	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs2390124-T	NR	5E-8		0.0163161	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165727447	165727448	rs2390124	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs2390124-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1849	chr2	165730719	165730720	rs12998590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs12998590-A	NR	8E-63		0.0481079	[0.042-0.054] unit increase	Affymetrix [319769] (imputed)	N
1849	chr2	165730719	165730720	rs12998590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs12998590-A	NR	8E-32		0.0340646	[0.028-0.04] unit increase	Affymetrix [321114] (imputed)	N
1849	chr2	165730719	165730720	rs12998590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	RNA5SP110	rs12998590-A	NR	4E-38		0.0375492	[0.032-0.043] unit increase	Affymetrix [321169] (imputed)	N
1849	chr2	165737319	165737320	rs1858101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1858101-T	NR	3E-14		0.0238949	[0.018-0.03] unit decrease	Affymetrix [321788] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	2E-25		0.0293654	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	7E-26		0.0296198	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	3E-13		0.0207086	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	3E-12		0.0203807	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	2E-8		0.01584	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
1849	chr2	165737930	165737931	rs1509097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs1509097-T	NR	3E-14		0.0216634	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165739013	165739014	rs10497251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs10497251-C	NR	3E-22		0.0330326	[0.026-0.04] unit increase	Affymetrix [319769] (imputed)	N
1849	chr2	165739013	165739014	rs10497251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs10497251-C	NR	5E-23		0.0337182	[0.027-0.04] unit increase	Affymetrix [319769] (imputed)	N
1849	chr2	165739013	165739014	rs10497251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs10497251-C	NR	2E-12		0.0241835	[0.017-0.031] unit increase	Affymetrix [321114] (imputed)	N
1849	chr2	165739013	165739014	rs10497251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs10497251-C	NR	1E-8		0.0201629	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
1849	chr2	165739013	165739014	rs10497251	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs10497251-C	NR	1E-14		0.0266019	[0.02-0.033] unit increase	Affymetrix [321169] (imputed)	N
1849	chr2	165741845	165741845	rs755825588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs755825588-ATTTTTTT	NR	2E-9		0.0360489	[0.024-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165741845	165741845	rs755825588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs755825588-ATTTTTTT	NR	1E-9		0.0364214	[0.025-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165744678	165744679	rs17353404	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	RNA5SP111	rs17353404-G	NR	1E-10		0.0217603	[0.015-0.028] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165750389	165750390	rs13424957	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Type 2 diabetes	1,264 African American cases, 5,678 African American controls	503 African American cases, 1,656 African American controls	2q24.3	intergenic	rs13424957-?	0.81	3E-6	(T2D)	1.242236	[1.14-1.36]	Affymetrix [~ 2740000] (imputed)	N
1849	chr2	165775199	165775200	rs2061029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs2061029-C	NR	4E-14		0.0249617	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165775199	165775200	rs2061029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs2061029-C	NR	2E-13		0.0242622	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165781507	165781508	rs11674520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs11674520-A	NR	3E-10		0.0186548	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165785585	165785586	rs1840328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1840328-A	NR	1E-21		0.0269777	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165785585	165785586	rs1840328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1840328-A	NR	1E-21		0.0269578	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165785585	165785586	rs1840328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1840328-A	NR	2E-12		0.020045	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1849	chr2	165785585	165785586	rs1840328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1840328-A	NR	2E-12		0.0201394	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1849	chr2	165786329	165786330	rs10930140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10930140-T	NR	2E-19		0.0255643	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1849	chr2	165786329	165786330	rs10930140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10930140-T	NR	7E-20		0.0258458	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
1849	chr2	165786329	165786330	rs10930140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10930140-T	NR	8E-10		0.017567	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1849	chr2	165786329	165786330	rs10930140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10930140-T	NR	5E-9		0.0172787	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1849	chr2	165786329	165786330	rs10930140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10930140-T	NR	2E-11		0.0191684	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
1849	chr2	165786653	165786654	rs10185305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10185305-A	NR	4E-15		0.0230998	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165786653	165786654	rs10185305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10185305-A	NR	7E-15		0.022894	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1849	chr2	165786653	165786654	rs10185305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10185305-A	NR	1E-9		0.0184968	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1849	chr2	165786653	165786654	rs10185305	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs10185305-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1849	chr2	165793560	165793561	rs16849949	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs16849949-T	NR	4E-23		0.0307706	[0.025-0.037] unit increase	Affymetrix [321114] (imputed)	N
1849	chr2	165793967	165793968	rs17353624	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	2q24.3	SLC38A11	rs17353624-?	NR	6E-7		4.976	NR unit increase	Illumina [up to 1520000] (imputed)	N
1850	chr2	165806462	165806462	rs142423523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs142423523-ATTGTGGAGT	NR	1E-9		0.0324564	[0.022-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165806462	165806462	rs142423523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs142423523-ATTGTGGAGT	NR	1E-9		0.0326818	[0.022-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165812427	165812428	rs1463342	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1463342-A	NR	7E-9		0.0219095	[0.014-0.029] unit decrease	Affymetrix [321169] (imputed)	N
1850	chr2	165812427	165812428	rs1463342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs1463342-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1850	chr2	165814742	165814743	rs1454410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1454410-G	NR	1E-11		0.0189701	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165814742	165814743	rs1454410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs1454410-G	NR	8E-12		0.0191859	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165821267	165821268	rs10176837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10176837-T	NR	7E-10		0.023111	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165821267	165821268	rs10176837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10176837-T	NR	7E-10		0.023126	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165821267	165821268	rs10176837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs10176837-T	NR	1E-9		0.0229688	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1850	chr2	165821680	165821681	rs6432806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs6432806-G	NR	1E-10		0.018223	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165821680	165821681	rs6432806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs6432806-G	NR	4E-11		0.0186853	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165822241	165822242	rs6708141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs6708141-A	NR	4E-8		0.0194611	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165825400	165825401	rs6720547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs6720547-T	NR	5E-8		0.0233343	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165825400	165825401	rs6720547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	SLC38A11	rs6720547-T	NR	3E-8		0.0236341	[0.015-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165828041	165828042	rs60580992	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q24.3	NR	rs60580992-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
1850	chr2	165833239	165833240	rs10445758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10445758-A	NR	1E-8		0.0160545	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165833239	165833240	rs10445758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10445758-A	NR	8E-9		0.0162428	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1850	chr2	165834235	165834236	rs10190215	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.3	SCN3A	rs10190215-?	NR	3E-6	(CE 14:0)	0.25338182	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1850	chr2	165837100	165837101	rs2390160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs2390160-T	NR	1E-8		0.0165495	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165837100	165837101	rs2390160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs2390160-T	NR	8E-9		0.016733	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165840008	165840009	rs10209854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10209854-A	NR	7E-10		0.0234585	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165840008	165840009	rs10209854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10209854-A	NR	2E-10		0.0240537	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165840008	165840009	rs10209854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10209854-A	NR	4E-9		0.0225148	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1850	chr2	165840008	165840009	rs10209854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs10209854-A	NR	2E-9		0.0231617	[0.016-0.031] unit increase	Affymetrix [321169] (imputed)	N
1850	chr2	165846591	165846592	rs12692755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs12692755-A	NR	2E-11		0.0217426	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165846591	165846592	rs12692755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs12692755-A	NR	1E-11		0.0221404	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
1850	chr2	165846591	165846592	rs12692755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs12692755-A	NR	2E-10		0.0207741	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1850	chr2	165846591	165846592	rs12692755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q24.3	AC013463.2	rs12692755-A	NR	7E-11		0.02147	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
1850	chr2	165890732	165890733	rs776488	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q24.3	NR	rs776488-?	NR	2E-7	(footedness)			Illumina [535076]	N
1851	chr2	166026081	166026085	rs72149316	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q24.3	SCN3A	rs72149316-GATAA		6E-7	(men)	0.606	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1851	chr2	166026081	166026085	rs72149316	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q24.3	SCN3A	rs72149316-GATAA		6E-7		0.428	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1852	chr2	166127282	166127283	rs2119067	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q24.3	SCN2A	rs2119067-T	0.7749	3E-6		0.0767	[0.045-0.109] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1852	chr2	166133631	166133632	rs353116	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	2q24.3	SCN3A	rs353116-C	0.615	3E-8		1.0638298	[1.04-1.09]	Illumina [11933700] (imputed)	N
1852	chr2	166144413	166144414	rs16850317	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	2q24.3	SCN2A	rs16850317-T	0.94	5E-6	(Age 20-60 years)	0.3519	[0.20-0.50] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q24.3	SCN2A	rs12477385-G	0.7745	2E-8		0.00924442	[0.006-0.0125] unit increase	Affymetrix [12370749]	N
1852	chr2	166144849	166144850	rs12477385	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.3	NR	rs12477385-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	2q24.3	SCN2A	rs12477385-G	0.79	8E-7		0.013	[0.0071-0.0189] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.3		rs12477385-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.3		rs12477385-T	0.2264	7E-11		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs12477385-T	0.2264	2E-12	(MTAG)	0.011	[0.0079-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr2	166144849	166144850	rs12477385	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.3	Intergenic	rs12477385-T	0.227	5E-8	(MTAG)	0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1852	chr2	166148323	166148324	rs61051952	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q24.3	NA	rs61051952-A	0.7549	7E-12		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1852	chr2	166148680	166148681	rs12619604	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2q24.3	NR	rs12619604-A	0.7674	3E-10		0.013	[0.0089-0.0171] unit increase	NR [~ 27400000] (imputed)	N
1852	chr2	166152388	166152389	rs17183814	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	2q24.3	SCN2A	rs17183814-G	0.924	3E-8		1.10838	[1.07-1.14]	Affymetrix, Illumina [7549318] (imputed)	N
1852	chr2	166152388	166152389	rs17183814	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	2q24.3		rs17183814-?	NR	7E-11		0.0229	NR unit decrease	NR [5637374] (imputed)	N
1852	chr2	166152388	166152389	rs17183814	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	2q24.3	SCN2A	rs17183814-A	NR	2E-9		0.883	[0.848-0.919]	Illumina [3742365] (imputed)	N
1852	chr2	166152388	166152389	rs17183814	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q24.3	SCN2A, CSRNP3	rs17183814-G	0.9251	2E-9		1.1416829		NR [9372253] (imputed)	N
1852	chr2	166152650	166152651	rs111535588	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q24.3	NR	rs111535588-G	NR	5E-8	(GEE model)	0.83287	[0.53-1.13] unit decrease	NR [NR] (imputed)	N
1852	chr2	166153195	166153195	rs534624978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q24.3		rs534624978-CA	NR	2E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1852	chr2	166162704	166162705	rs12469667	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q24.3	NA	rs12469667-A	0.2322	3E-10		0.013	[0.0089-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
1852	chr2	166176281	166176282	rs1446577	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs1446577-?	NR	5E-7		5.033	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1852	chr2	166185720	166185721	rs935402	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q24.3	SCN2A, CSRNP3	rs935402-?		1E-11				Affymetrix, Illumina [NR] (imputed)	N
1852	chr2	166186003	166186004	rs3769943	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2q24.3	NR	rs3769943-C	0.301	4E-10		0.0148686	[0.01-0.02] unit increase	NR [9732723] (imputed)	N
1852	chr2	166188693	166188694	rs10187103	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q24.3	NR	rs10187103-T	0.3	5E-9		0.00933382	[0.0062-0.0125] unit decrease	NR [9732723] (imputed)	N
1852	chr2	166188698	166188699	rs7420021	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q24.3	NR	rs7420021-T	0.305	6E-12		0.00808228	[0.0058-0.0104] unit increase	NR [9732723] (imputed)	N
1852	chr2	166193964	166193965	rs13387970	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q24.3	SCN2A	rs13387970-C	0.527543	1E-8		0.0119034	[0.0079-0.0159] unit increase	NR [16516521] (imputed)	N
1852	chr2	166196680	166196681	rs2060199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q24.3		rs2060199-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1852	chr2	166199283	166199284	rs3769949	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q24.3		rs3769949-T	0.528	3E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1853	chr2	166224952	166224953	rs6742483	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q24.3		rs6742483-G	0.692	7E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1853	chr2	166234631	166234632	rs3769955	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-unrelated)	1,070 European ancestry cases, 4,118 European ancestry controls	Up to 1,034 European ancestry cases, Up to 1,645 European ancestry controls	2q24.3	SCN2A	rs3769955-T	0.4	2E-7		1.22	[1.13-1.31]	Illumina [8129384] (imputed)	N
1853	chr2	166234631	166234632	rs3769955	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	2q24.3	SCN2A	rs3769955-T	0.4	4E-6		1.22	[1.12-1.33]	Illumina [8129524] (imputed)	N
1853	chr2	166234631	166234632	rs3769955	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	2q24.3	SCN2A	rs3769955-T	0.4	3E-10	(Overall)	1.22	[1.15-1.30]	Illumina [up to 8129553] (imputed)	N
1853	chr2	166238033	166238034	rs7581427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs7581427-T	0.6652	9E-10	(MTAG)	0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1853	chr2	166250128	166250129	rs2390258	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q24.3	SCN2A	rs2390258-A	0.3079	3E-10		0.1031	[0.071-0.135] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1853	chr2	166250243	166250244	rs13007361	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q24.3	NR	rs13007361-A	0.208	2E-8		0.017533824	[0.011-0.024] unit increase	NR [~ 10000000] (imputed)	N
1853	chr2	166250413	166250414	rs112282597	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	2q24.3	SCN2A	rs112282597-A	0.7545	2E-8		0.0631	[0.041-0.085] unit decrease	NR [9744772] (imputed)	N
1853	chr2	166265015	166265016	rs16850592	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2q24.3	SCN2A	rs16850592-T	0.758963	1E-10	(EA)	0.00931811	[0.0065-0.0122] unit increase	Affymetrix [~ 8800000] (imputed)	N
1853	chr2	166312613	166312614	rs1355996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q24.3		rs1355996-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1854	chr2	166337817	166337818	rs79891548	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	4,945 European ancestry female cases, 16,246 European ancestry female controls	NA	2q24.3	CSRNP3	rs79891548-T	NR	1E-6	(females)	0.216	[0.13-0.3] unit decrease	Illumina [7531543] (imputed)	N
1854	chr2	166370825	166370826	rs6432832	24688116	Deelen J	2014-03-31	Hum Mol Genet	Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age.	Longevity (85 years and older)	7,729 European ancestry cases, 16,121 European ancestry controls	13,060 European ancestry cases, 61,156 European ancestry controls	2q24.3	CSRNP3	rs6432832-A	0.339	9E-6		1.06	[1.03-1.09]	Illumina [2480356] (imputed)	N
1854	chr2	166396312	166396313	rs7566691	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs7566691-?	NR	4E-7		5.061	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1854	chr2	166460588	166460589	rs1551337	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.3	NR	rs1551337-T	0.49503	2E-8		0.035092626	[0.023-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1854	chr2	166460588	166460589	rs1551337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs1551337-T	0.4875	1E-8	(MTAG)	0.0074	[0.0049-0.0099] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1855	chr2	166490342	166490343	rs10211296	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors in alcohol dependence	454 African American women individuals, 1,087 African American men individuals, 444 European ancestry women individuals, 992 European ancestry men individuals.	NA	2q24.3	NR	rs10211296-?	0.7414	7E-9	(AA)			Illumina [at least 550000] (imputed)	N
1855	chr2	166523129	166523130	rs372574584	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	2q24.3	NR	rs372574584-A	0.285	4E-6		0.1564	[0.09-0.223] unit increase	Illumina [10677593] (imputed)	N
1855	chr2	166533814	166533815	rs10182272	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs10182272-?	NR	1E-6		4.867	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1855	chr2	166551751	166551752	rs2113843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q24.3		rs2113843-T	NR	6E-9		0.0119	[0.008-0.0158] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1855	chr2	166551751	166551752	rs2113843	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q24.3	CSRNP3, GALNT3	rs2113843-T	0.49	3E-12		6.99	z-score increase	Affymetrix [4311822] (imputed)	N
1855	chr2	166552917	166552918	rs34462569	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	2q24.3	CSRNP3	rs34462569-G	0.934	4E-6	(opposite direction)	1.22	[1.12-1.33]	Illumina [up to 6000000] (imputed)	N
1855	chr2	166566004	166566005	rs34095745	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2q24.3	CSRNP3	rs34095745-A	0.499915	2E-11		0.0521	[0.037-0.067] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1855	chr2	166566004	166566005	rs34095745	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	2q24.3	CSRNP3	rs34095745-A	0.499915	6E-16		0.0556	[0.042-0.069] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
1855	chr2	166573775	166573776	rs35969972	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 0-15)	11,807 European and unknown ancestry individuals	NA	2q24.3	NR	rs35969972-T	0.5148	2E-9		0.0771	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1855	chr2	166576385	166576386	rs10204976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	2q24.3		rs10204976-G	NR	8E-9		0.0666	[0.044-0.089] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
1855	chr2	166577488	166577489	rs7586085	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q24.3	NR	rs7586085-A	0.5337	9E-21		0.0532	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1855	chr2	166577488	166577489	rs7586085	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q24.3	NR	rs7586085-A	0.5189	2E-16	(European)	0.0511	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	TB-LM or TBLH-BMD (pleiotropy)	8,327 European ancestry individuals, 2,087 individuals	NA	2q24.3	Intergenic	rs6726821-G	0.45	4E-8				Illumina [2276811] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	28743860	Medina-Gomez C	2017-07-25	Nat Commun	Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus.	Bone mineral density (paediatric, total body less head)	8,327 European ancestry individuals, 2,087 individuals	NA	2q24.3	Intergenic	rs6726821-G	0.45	3E-8		0.0769	[NR] unit decrease	Illumina [2276811] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	2q24.3	GALNT3	rs6726821-T	NR	2E-6	(EA)	0.0789	[0.047-0.111] unit increase	Illumina [~ 2500000] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, upper limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	2q24.3	GALNT3	rs6726821-T	0.54	1E-8		0.083	[0.054-0.112] unit increase	Illumina [~ 2500000] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	2q24.3	GALNT3	rs6726821-T	NR	7E-8	(EA)	0.0889	[0.057-0.121] unit increase	Illumina [~ 2500000] (imputed)	N
1855	chr2	166578113	166578114	rs6726821	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, total body less head)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	2q24.3	GALNT3	rs6726821-T	0.54	4E-10		0.091	[0.062-0.120] unit increase	Illumina [~ 2500000] (imputed)	N
1855	chr2	166583243	166583244	rs6710518	21533022	Duncan EL	2011-04-21	PLoS Genet	Genome-wide association study using extreme truncate selection identifies novel genes affecting bone mineral density and fracture risk.	Bone mineral density	900 European ancestry female individuals with low hip bone mineral density, 1,055 European ancestry female individuals with high hip bone mineral density	20,898 European ancestry female individuals	2q24.3	GALNT3	rs6710518-T	NR	5E-10	(femoral neck)	0.064	[NR] unit decrease	Illumina [2543887] (imputed)	N
1856	chr2	166601045	166601046	rs1346004	24945404	Kemp JP	2014-06-19	PLoS Genet	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	Bone mineral density (paediatric, lower limb)	8,007 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children	NA	2q24.3	GALNT3	rs1346004-A	0.5	5E-7		0.08	unit decrease	Illumina [~ 2500000] (imputed)	N
1856	chr2	166601045	166601046	rs1346004	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	2q24.3	GALNT3	rs1346004-A	0.5	4E-30		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1856	chr2	166610826	166610827	rs13406280	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q24.3	NR	rs13406280-C	0.566	6E-12		0.0269	[0.019-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1856	chr2	166618261	166618262	rs1968294	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	2q24.3	NR	rs1968294-T	0.4895	4E-9		0.0632	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1856	chr2	166620635	166620636	rs13422985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q24.3		rs13422985-G	NR	2E-13		0.0164	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1856	chr2	166666104	166666105	rs34288836	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	2q24.3	GALNT3, LOC105373730	rs34288836-?	NR	4E-6		2.52		Illumina [6778521] (imputed)	N
1856	chr2	166667203	166667204	rs13411363	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q24.3	ENSG00000229195	rs13411363-A	NR	2E-8		0.017040169	[0.011-0.023] unit increase	Affymetrix [NR]	N
1856	chr2	166667974	166667975	rs13427949	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q24.3	NR	rs13427949-?	NR	5E-6		4.551	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1856	chr2	166672948	166672949	rs13413443	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q24.3	NR	rs13413443-C	0.383698	7E-10		0.03979674	[0.027-0.052] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1856	chr2	166672948	166672949	rs13413443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q24.3	Intergenic	rs13413443-T	0.3648	9E-10	(MTAG)	0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1856	chr2	166672948	166672949	rs13413443	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q24.3	Intergenic	rs13413443-T	0.3648	6E-10		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1856	chr2	166711603	166711604	rs13421971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q24.3	NR	rs13421971-A	NR	2E-9		6.008	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1856	chr2	166714080	166714081	rs2304003	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	2q24.3	KIAA1992	rs2304003-T	0.26	9E-6	(Age 17)	0.14	[0.081-0.199] unit increase	Illumina [2293137] (imputed)	N
1856	chr2	166716498	166716499	rs9973361	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q24.3	NR	rs9973361-A	0.2873	1E-8		0.0355	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1857	chr2	166732336	166732337	rs3815993	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	2q24.3	TTC21B	rs3815993-A	0.18	4E-6		0.195	[0.11-0.28] unit decrease	Illumina [6379332] (imputed)	N
1857	chr2	166734932	166734933	rs7564041	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q24.3		rs7564041-G	NR	4E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1857	chr2	166754552	166754553	rs6432852	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	2q24.3	TTC21B	rs6432852-?	NR	5E-6	(additive )	1.1764705		Affymetrix [NR]	N
1857	chr2	166812914	166812915	rs11680819	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q24.3		rs11680819-C	0.154530379	9E-6		0.01533141	[0.0086-0.0221] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1857	chr2	166813724	166813725	rs74338693	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q24.3	NR	rs74338693-G	NR	7E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1857	chr2	166814368	166814369	rs10221583	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q24.3		rs10221583-A	0.156899786	5E-6		0.01564566	[0.0089-0.0224] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1858	chr2	166858390	166858391	rs12987787	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	2q24.3	SCN1A	rs12987787-T	0.79	1E-7	(Focal epilepsy)	1.12	[1.01-1.14]	Affymetrix, Illumina [NR] (imputed)	N
1858	chr2	166873298	166873299	rs565348	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q24.3	Intergenic	rs565348-A	0.6792	8E-10	(MTAG)	0.0118	[0.0081-0.0155] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1858	chr2	166873298	166873299	rs565348	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q24.3	Intergenic	rs565348-A	0.6792	2E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1858	chr2	166895065	166895066	rs6732655	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	2q24.3	SCN1A	rs6732655-T	0.78	9E-10	(All epilepsy)	1.12	[1.08-1.16]	Affymetrix, Illumina [NR] (imputed)	N
1858	chr2	166897863	166897864	rs6432860	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-unrelated)	1,070 European ancestry cases, 4,118 European ancestry controls	Up to 1,034 European ancestry cases, Up to 1,645 European ancestry controls	2q24.3	SCN1A	rs6432860-G	0.704	2E-9		1.29	[1.19-1.40]	Illumina [8129384] (imputed)	N
1858	chr2	166897863	166897864	rs6432860	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures	929 European ancestry MMR vaccine-related febrile seizures cases, 1,070 European ancestry MMR vaccine-unrelated febrile seizures cases, 4,118 European ancestry controls	Up to 408 European ancestry MMR vaccine-related febrile seizures cases, Up to 1,034 European ancestry MMR vaccine-unrelated febrile seizures cases, Up to 1,645 European ancestry controls	2q24.3	SCN1A	rs6432860-G	0.704	2E-16	(Overall)	1.34	[1.25-1.43]	Illumina [up to 8129553] (imputed)	N
1858	chr2	166910676	166910677	rs7575938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q24.3		rs7575938-A	0.3408	1E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1858	chr2	166910676	166910677	rs7575938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs7575938-A	0.3408	5E-11	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1858	chr2	166920812	166920813	rs1427651	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	2q24.3		rs1427651-C	0.157126102	6E-6		0.015367058	[0.0087-0.022] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
1858	chr2	166920813	166920814	rs57074029	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q24.3	SCN1A	rs57074029-?		4E-6				Illumina [4322238] (imputed)	N
1858	chr2	166922212	166922213	rs12151636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.3		rs12151636-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1858	chr2	166942139	166942140	rs11904006	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2q24.3	intergenic	rs11904006-?	NR	6E-6	(SF1)			Affymetrix [5476100] (imputed)	N
1858	chr2	166942662	166942663	rs12463754	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	2q24.3		rs12463754-G	0.2706	4E-10		0.01734	[0.012-0.023] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1858	chr2	166943276	166943277	rs11890028	34456681	Song M	2021-08-12	Front Neurosci	Genome-Wide Meta-Analysis Identifies Two Novel Risk Loci for Epilepsy.	Epilepsy	19,122 European ancestry cases, 168,998 European ancestry controls, 2,143 Japanese ancestry cases, 210,310 Japanese ancestry controls, 5,087 cases, 395,209 controls	NA	2q24.3		rs11890028-T	NR	8E-13		1.085		NR [NR]	N
1858	chr2	166943276	166943277	rs11890028	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	2q24.3	SCN3A, SCN2A, TTC21B, SCN1A	rs11890028-	0.27	5E-8		5.46	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
1858	chr2	166943276	166943277	rs11890028	22949513	EPICURE Consortium	2012-09-04	Hum Mol Genet	Genome-wide association analysis of genetic generalized epilepsies implicates susceptibility loci at 1q43, 2p16.1, 2q22.3 and 17q21.32.	Generalized epilepsy	702 European ancestry genetic absence epilepsies cases, 586 European ancestry juvenile myoclonic epilepsy cases, 239 European ancestry other genetic generalized epilepsies cases, 2,461 European ancestry controls	347 European ancestry genetic absence epilepsies trios, 166 European ancestry juvenile myoclonic epilepsy trios, 91 European ancestry other genetic generalized epilepsies trios, 385 European ancestry genetic absence epilepsies cases, 382 European ancestry juvenile myoclonic epilepsy cases, 122 European ancestry other genetic generalized epilepsies cases, up to 889 European ancestry controls	2q24.3	SCN1A	rs11890028-T	0.688	4E-6	(All GGE)	1.18	[1.09-1.27]	Affymetrix [4560000] (imputed)	N
1858	chr2	166944003	166944004	rs11885663	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q24.3	NR	rs11885663-T	NR	4E-9		0.864	unit increase	Affymetrix [14661600] (imputed)	N
1858	chr2	166945366	166945367	rs13004083	25344690	Feenstra B	2014-10-26	Nat Genet	Common variants associated with general and MMR vaccine-related febrile seizures.	Febrile seizures (MMR vaccine-related)	929 European ancestry cases, 4,118 European ancestry controls	Up to 408 European ancestry cases, Up to 1,645 European ancestry controls	2q24.3	SCN1A	rs13004083-A	0.765	3E-12		1.47	[1.32-1.63]	Illumina [8129524] (imputed)	N
1858	chr2	166953618	166953619	rs51195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q24.3	NR	rs51195-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1858	chr2	166963391	166963392	rs6752526	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q24.3	NR	rs6752526-?	NR	4E-6		10667.332	NR unit decrease	Illumina [2379855]	N
1858	chr2	166978749	166978750	rs7587026	24014518	Kasperaviciute D	2013-09-06	Brain	Epilepsy, hippocampal sclerosis and febrile seizures linked by common genetic variation around SCN1A.	Mesial temporal lobe epilepsy with hippocampal sclerosis	up to 1,018 European ancestry cases, 7,552 European ancestry controls	959 European ancestry cases, 3,591 European ancestry controls	2q24.3	SCN1A	rs7587026-A	0.263	4E-8	(MTLEHS vs. Controls)	1.24	[1.15-1.34]	Illumina [531164]	N
1858	chr2	166978749	166978750	rs7587026	24014518	Kasperaviciute D	2013-09-06	Brain	Epilepsy, hippocampal sclerosis and febrile seizures linked by common genetic variation around SCN1A.	Mesial temporal lobe epilepsy with hippocampal sclerosis	up to 1,018 European ancestry cases, 7,552 European ancestry controls	959 European ancestry cases, 3,591 European ancestry controls	2q24.3	SCN1A	rs7587026-A	0.263	3E-9	(MTLEHS+FS vs. Controls)	1.42	[1.26-1.59]	Illumina [531164]	N
1858	chr2	166982289	166982290	rs666833	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q24.3	Intergenic	rs666833-T	0.8584	2E-8	(MTAG)	0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1859	chr2	166998766	166998767	rs6432877	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Epilepsy	14,534 European ancestry cases, 531 Han Chinese ancestry cases, 147 African American cases, 24,218 European ancestry controls, 2,875 Han Chinese ancestry controls, 2,584 African American controls	NA	2q24.3	SCN3A, SCN2A, TTC21B, SCN1A	rs6432877-G	0.26	2E-13		7.37	unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1859	chr2	167000842	167000843	rs2212656	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Focal epilepsy	9,095 European ancestry cases, 490 Han Chinese ancestry cases, 86 African American cases, 24,218 European ancestry controls, 2,875 Han Chinese ancestry controls, 2,584 African American controls	NA	2q24.3	SCN2A, SCN3A, TTC21B, SCN1A	rs2212656-A	0.26	7E-9		5.78	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1860	chr2	167133539	167133540	rs12478318	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.3	SCN7A	rs12478318-?	NR	5E-6	(TAG 58:10)	1.3404166	[0.76-1.92] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1860	chr2	167161369	167161370	rs72882854	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q24.3	NR	rs72882854-A	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
1860	chr2	167177358	167177359	rs4438497	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	2q24.3	SCN9A	rs4438497-?	NR	7E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1860	chr2	167214713	167214714	rs143020225	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	2q24.3	SCN9A	rs143020225-G	0.95	2E-7	(AA)			Illumina [NR] (imputed)	N
1861	chr2	167356586	167356587	rs4146081	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	2q24.3	LOC101929680, SCN7A, SCN9A	rs4146081-A	0.1	4E-6		0.39	[0.23-0.55] unit increase	Illumina [at least 4710000] (imputed)	N
1861	chr2	167377977	167377978	rs13015447	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	2q24.3	SCN7A	rs13015447-G	0.34	7E-6	(site of onset)	1.41	[NR]	Illumina [288357]	N
1862	chr2	167421604	167421605	rs9917308	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.3	NR	rs9917308-?	NR	4E-6				Affymetrix [NR]	N
1863	chr2	167516285	167516286	rs561943198	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q24.3		rs561943198-C	0.0012072	9E-6		0.43554	[0.24-0.63] unit decrease	Affymetrix [15580782] (imputed)	N
1863	chr2	167629848	167629849	rs13417783	31127053	Tang Y	2019-05-24	Diabetes	A Genetic Locus on Chromosome 2q24 Predicting Peripheral Neuropathy Risk in Type 2 Diabetes: Results From the ACCORD and BARI 2D Studies.	Diabetic peripheral neuropathy in type 2 diabetes	4,384 European ancestry cases, 784 European ancestry controls	791 European ancestry cases, 158 European ancestry controls, 1,345 African American individuals	2q24.3	XIRP2	rs13417783-?	NR	8E-12	(EA)	1.5873016	[1.39-1.82]	Affymetrix, Illumina [6847206] (imputed)	N
1864	chr2	167669750	167669751	rs12989217	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q24.3	XIRP2	rs12989217-T	0.158692513520133	2E-6	(G_Desulfovibrio_HB)	0.345828	[0.2-0.49] unit decrease	Illumina [7711310] (imputed)	N
1864	chr2	167674235	167674236	rs6724120	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q24.3	NR	rs6724120-?		6E-6				Illumina [4322238] (imputed)	N
1864	chr2	167737236	167737240	rs141644173	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	2q24.3	NR	rs141644173-ATAAG	NR	4E-6		0.1544	[0.088-0.221] SD units increase	NR [10700000] (imputed)	N
1864	chr2	167770085	167770086	rs1967279	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q24.3	Intergenic	rs1967279-A	0.0395	2E-8	(MTAG)	0.02	[0.013-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1865	chr2	167868500	167868501	rs79887329	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	2q24.3	NR	rs79887329-?	NR	4E-6		0.1705	[0.098-0.243] unit increase	Illumina [at least 560000] (imputed)	N
1866	chr2	167908803	167908804	rs6432967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q24.3		rs6432967-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1866	chr2	167957610	167957611	rs71428966	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.3	NR	rs71428966-A	0.05226	2E-8	(USP5)	0.07303	NR unit increase	Illumina [1671387] (imputed)	N
1866	chr2	167991354	167991355	rs7606603	29650764	McDonough CW	2018-04-01	Circ Genom Precis Med	Genetic Variants Influencing Plasma Renin Activity in Hypertensive Patients From the PEAR Study (Pharmacogenomic Evaluation of Antihypertensive Responses).	Plasma renin activity levels	461 European ancestry individuals, 297 African American ancestry individuals	150 European ancestry individuals	2q24.3	XIRP2	rs7606603-C	0.83	2E-7	(AA)	0.42	[0.26-0.58] unit decrease	Illumina [up to 1000000] (imputed)	N
1866	chr2	167992285	167992286	rs6720763	25865352	Schaarschmidt H	2015-04-10	J Allergy Clin Immunol	A genome-wide association study reveals 2 new susceptibility loci for atopic dermatitis.	Atopic dermatitis	870 European ancestry cases, 5,293 European ancestry controls	1,383  European ancestry cases, 1,728 European ancestry controls	2q24.3	XIRP2	rs6720763-C	0.18	4E-8		1.29	[NR]	Affymetrix [1623390] (imputed)	N
1867	chr2	168110352	168110352	rs201756261	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2q24.3		rs201756261-?	NR	6E-6		0.6123659	[0.35-0.88] unit increase	Illumina [9842460] (imputed)	N
1867	chr2	168159350	168159351	rs10497324	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	2q24.3	intergenic	rs10497324-A	0.04	2E-9	(KvDMR 21)			Illumina [515966]	N
1869	chr2	168414273	168414274	rs10176700	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.3	NR	rs10176700-C	0.01394	3E-9	(PIR)	0.005864	NR unit increase	Illumina [1671387] (imputed)	N
1870	chr2	168510877	168510878	rs61095853	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2q24.3	NR	rs61095853-?	NR	1E-28		0.44	[0.34-0.54] unit decrease	Illumina [at least 830937] (imputed)	N
1870	chr2	168516698	168516699	rs935638	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.3	STK39	rs935638-?	NR	2E-6	(salicylurate)	0.21291558	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
1870	chr2	168538350	168538351	rs2029084	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2q24.3	NR	rs2029084-C	NR	3E-6		0.01063	[0.0062-0.0151] unit increase	Illumina [~ 540852]	N
1871	chr2	168565692	168565693	rs13408808	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.3	CTAGE14P	rs13408808-G	0.083	8E-6	(Diet fat )	0.04	[NR] %energy increase	Illumina [899892]	N
1871	chr2	168577469	168577470	rs1868382	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q24.3	B3GALT1	rs1868382-C	0.823578096912894	6E-6		0.0032094	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1871	chr2	168603446	168603447	rs116677506	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q24.3	Intergenic	rs116677506-A	NR	7E-7	(between families)	4.955	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1871	chr2	168609314	168609315	rs79827531	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q24.3	NR	rs79827531-A	NR	3E-9		0.01773	[0.012-0.024] unit increase	Affymetrix [10847151] (imputed)	N
1871	chr2	168621004	168621005	rs1375311	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	2q24.3	B3GALT1	rs1375311-A	0.207134	9E-9		5.744	unit increase	NR [10847151] (imputed)	N
1871	chr2	168635914	168635915	rs10497329	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	2q24.3	XIRP2, LOC105616981	rs10497329-?		3E-6	(EA)	0.2644751	[0.15-0.38] unit decrease	Illumina [13620258] (imputed)	N
1871	chr2	168641834	168641835	rs2121324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q24.3		rs2121324-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1871	chr2	168641969	168641970	rs1004368	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q24.3	B3GALT1	rs1004368-G	0.103	2E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
1871	chr2	168644044	168644045	rs17583539	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q24.3	NR	rs17583539-G	0.224548984624773	3E-9		0.0065437057	[0.0044-0.0087] unit increase	NR [NR]	N
1871	chr2	168644044	168644045	rs17583539	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q24.3	NR	rs17583539-G	0.224548984624773	2E-8		0.007952069	[0.0052-0.0107] unit increase	NR [NR]	N
1871	chr2	168644044	168644045	rs17583539	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q24.3	NR	rs17583539-G	0.224548984624773	1E-8		0.0103727225	[0.0068-0.0139] unit increase	NR [NR]	N
1871	chr2	168646040	168646041	rs13020412	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	2q24.3	CERS6	rs13020412-A		9E-6		0.1373	[NR] unit increase	Illumina [at least 233546] (imputed)	N
1871	chr2	168653320	168653321	rs75904417	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	2q24.3	NR	rs75904417-C		1E-6		0.1698	[0.1-0.24] SD units increase	NR [10700000] (imputed)	N
1871	chr2	168653320	168653321	rs75904417	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	2q24.3	NR	rs75904417-C		7E-6		0.1515	[0.085-0.218] SD units increase	NR [10700000] (imputed)	N
1872	chr2	168810136	168810137	rs7595310	34775353	Mousa M	2021-11-11	EBioMedicine	Genome-wide association study of hospitalized COVID-19 patients in the United Arab Emirates.	COVID-19 severity	72 East Asian ancestry cases, 35 East Asian ancestry controls, 81 South Asian ancestry cases, 18 South Asian ancestry controls, 210 European ancestry cases, 92 European ancestry controls, 90 American ancestry cases, 12 American ancestry controls	NA	2q24.3		rs7595310-A	0.26	5E-6		0.41	[0.27-0.59]	Illumina [9175654] (imputed)	N
1873	chr2	168857544	168857545	rs578031265	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Osteoporosis	7,788 Japanese ancestry cases, 204,665 Japanese ancestry controls	NA	2q24.3		rs578031265-T	9.38096E-4	2E-9		10.157258	[4.744848466-21.74356061]	Illumina [8919992] (imputed)	N
1874	chr2	169012954	169012955	rs16854905	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q24.3	NR	rs16854905-C	NR	5E-9		1.058	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1874	chr2	169030069	169030069	rs67465958	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q24.3	STK39	rs67465958-?	NR	3E-20		0.7776	[0.61-0.94] unit increase	Affymetrix [11100000] (imputed)	N
1874	chr2	169041385	169041386	rs6749447	19114657	Wang Y	2008-12-29	Proc Natl Acad Sci U S A	From the Cover: Whole-genome association study identifies STK39 as a hypertension susceptibility gene.	Blood pressure	542 Old Order Amish individuals	5,229 European ancestry individuals, 1,347 Amish individuals, 575 Hutterite individuals	2q24.3	STK39	rs6749447-G	0.28	2E-7		1.9	[1.2-2.6] mm Hg increase in DBP	Affymetrix [79447]	N
1874	chr2	169046631	169046632	rs60587303	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	2q24.3	STK39	rs60587303-C	0.0051	3E-9		1.97	[1.58-2.47]	Affymetrix, Illumina [9061522] (imputed)	N
1875	chr2	169091941	169091942	rs2390669	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q24.3	STK39	rs2390669-C	0.244	6E-10	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
1875	chr2	169091941	169091942	rs2390669	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q24.3	STK39	rs2390669-C	0.13	2E-10		0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
1875	chr2	169092427	169092428	rs35144585	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q24.3	STK39	rs35144585-T		6E-6		0.0057	[0.0032-0.0082] unit increase	Affymetrix [13304133] (imputed)	N
1875	chr2	169103998	169103999	rs76179989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q24.3		rs76179989-G	NR	1E-10		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1875	chr2	169103998	169103999	rs76179989	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q24.3	NR	rs76179989-?	NR	3E-8	(right thalamus proper)			NR [9227495] (imputed)	N
1875	chr2	169110393	169110394	rs1474055	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	2q24.3	STK39	rs1474055-T	0.1312	3E-39		0.1796	[0.15-0.21] unit increase	NR [7784415] (imputed)	N
1875	chr2	169110393	169110394	rs1474055	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	2q24.3	STK39	rs1474055-T	0.126	6E-26		1.2048193	[1.16-1.25]	Illumina [11933700] (imputed)	N
1875	chr2	169110393	169110394	rs1474055	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	2q24.3	STK39	rs1474055-T	0.128	1E-20		1.214	[1.17-1.26]	Illumina [7893274] (imputed)	N
1875	chr2	169117024	169117025	rs2102808	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q24.3	intergenic	rs2102808-T	0.1193	1E-11		0.0197	[0.014-0.025] unit increase	Affymetrix [18391927] (imputed)	N
1875	chr2	169117024	169117025	rs2102808	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	2q24.3	STK39	rs2102808-C	0.12	4E-10		1.18	[1.12-1.24]	Illumina [7689524] (imputed)	N
1875	chr2	169119608	169119609	rs4613239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q24.3		rs4613239-G	NR	4E-17		0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1875	chr2	169119608	169119609	rs4613239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2q24.3		rs4613239-G	0.242889	2E-11		0.0248895	[0.018-0.032] unit increase	Illumina [13479178] (imputed)	N
1875	chr2	169119608	169119609	rs4613239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.3		rs4613239-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1875	chr2	169129144	169129145	rs1955337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q24.3		rs1955337-T	0.24176	2E-14		0.024335	[0.018-0.031] unit increase	Illumina [13479924] (imputed)	N
1875	chr2	169143034	169143035	rs9917256	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	2q24.3	intergenic	rs9917256-?	NR	3E-6		1.19	[NR]	Illumina [2500000] (imputed)	N
1875	chr2	169155594	169155595	rs13016703	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	2q24.3	STK39, CERS6	rs13016703-?	NR	3E-16		1.2091899	[1.16-1.26]	Illumina [12438219] (imputed)	N
1875	chr2	169155999	169156000	rs4667572	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	2q24.3	STK39	rs4667572-A		4E-13		0.1377	[0.1-0.17] unit increase	Illumina [NR]	N
1875	chr2	169175291	169175292	rs78851383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q24.3	STK39	rs78851383-T	0.0146	7E-6		0.1332	[0.075-0.191] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1875	chr2	169175291	169175292	rs78851383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q24.3	STK39	rs78851383-T	0.0146	8E-6		0.1328	[0.075-0.191] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1876	chr2	169224748	169224749	rs192672328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q24.3		rs192672328-A	0.00266200000000005	4E-10		0.1448413	[0.099-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1876	chr2	169272209	169272210	rs4399687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs4399687-C	NR	2E-12		0.0469	[0.034-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q24.3		rs183034862-T	NR	6E-9		0.0457	[0.03-0.061] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q24.3		rs183034862-T	NR	2E-9		0.0471	[0.032-0.062] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q24.3	CERS6	rs183034862-T	0.02506	7E-43		0.10118317	[0.087-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs183034862-C	0.977185	1E-49				Affymetrix, Illumina [22063850] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q24.3	NR	rs183034862-C	0.976202	4E-53		0.099299	[0.087-0.112] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q24.3	NR	rs183034862-T	0.02511	4E-10		0.040192	[0.028-0.053] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q24.3		rs183034862-?	NR	1E-50				NR [~ 8900000] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q24.3		rs183034862-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2q24.3	CERS6	rs183034862-T	NR	1E-12		0.102865	[0.074-0.131] unit increase	Affymetrix [16832071] (imputed)	N
1876	chr2	169313517	169313518	rs183034862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2q24.3	CERS6	rs183034862-T	0.0228	5E-14		0.09580662	[0.071-0.121] unit increase	Affymetrix [~ 2500000] (imputed)	N
1876	chr2	169340852	169340853	rs77395336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q24.3	CERS6	rs77395336-A	0.068451	6E-20		0.040111717	[0.032-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
1877	chr2	169379413	169379414	rs10930328	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q24.3	NR	rs10930328-?	NR	1E-6				Affymetrix [NR]	N
1877	chr2	169389090	169389091	rs13393173	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	2q24.3	LASS6	rs13393173-A	0.12	4E-6				Illumina [283348]	N
1877	chr2	169391902	169391903	rs13006127	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q24.3	CERS6, MIR4774	rs13006127-C	0.5429999999999999	2E-6		1.055164		NR [9372253] (imputed)	N
1878	chr2	169478860	169478861	rs61098410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q24.3		rs61098410-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1878	chr2	169481836	169481837	rs13417268	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	2q24.3	CERS6	rs13417268-C	0.758	2E-8		1.06375	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1878	chr2	169493206	169493207	rs2390725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q24.3		rs2390725-A	NR	1E-9		0.041	[0.028-0.054] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1878	chr2	169498623	169498623	rs35565867	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs35565867-C	0.814689	5E-8		0.0605889	[0.037-0.084] increase	Affymetrix [11014269] (imputed)	N
1878	chr2	169514698	169514699	rs76172517	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q24.3	CERS6	rs76172517-T	0.886837	2E-8		0.0178634	[0.012-0.024] unit increase	Affymetrix [NR] (imputed)	N
1878	chr2	169518097	169518098	rs17196288	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs17196288-T	NR	5E-12		0.0479	[0.034-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169535106	169535107	rs77894785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs77894785-G	NR	3E-13		0.0412	[0.03-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169535106	169535107	rs77894785	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs77894785-G	NR	8E-18		0.0494	[0.038-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169543918	169543919	rs114072917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs114072917-T	NR	4E-9		0.0422	[0.028-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169548983	169548984	rs116076574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs116076574-A	NR	3E-9		0.0494	[0.033-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169548983	169548984	rs116076574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs116076574-A	NR	3E-12		0.0593	[0.043-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1878	chr2	169554117	169554118	rs62174422	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2q24.3	CERS6	rs62174422-G	0.03904412794109	2E-11		0.0832	[0.059-0.107] SD decrease	Illumina [22400000] (imputed)	N
1878	chr2	169589697	169589698	rs2390731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs2390731-A	NR	5E-28		0.0508	[0.042-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1878	chr2	169589697	169589698	rs2390731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs2390731-A	NR	5E-35		0.0582	[0.049-0.067] unit increase	Affymetrix [9000000] (imputed)	N
1878	chr2	169605600	169605601	rs114630546	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella sp000434975 abundance in stool	5,959 Finnish ancestry individuals	NA	2q24.3		rs114630546-C	0.0264231	1E-9		0.360715	[0.24-0.48] unit increase	Illumina [7980478] (imputed)	N
1879	chr2	169621715	169621716	rs60715500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs60715500-T	NR	6E-11		0.0308	[0.022-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169630482	169630483	rs1063729	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs1063729-A	NR	6E-11		0.0171	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169630482	169630483	rs1063729	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs1063729-A	NR	1E-21		0.0254	[0.02-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169660984	169660985	rs17265731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs17265731-A	NR	4E-15		0.0331	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169675865	169675866	rs182986005	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2q24.3	NR	rs182986005-G		6E-6		0.5864	[0.33-0.84] SD units increase	NR [10700000] (imputed)	N
1879	chr2	169681150	169681151	rs3732031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs3732031-T	NR	3E-27		0.0716	[0.059-0.085] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169681150	169681151	rs3732031	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs3732031-T	NR	5E-35		0.0837	[0.07-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169694293	169694294	rs62175723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs62175723-T	NR	1E-9		0.0415	[0.028-0.055] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169694293	169694294	rs62175723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs62175723-T	NR	3E-16		0.0568	[0.043-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1879	chr2	169694460	169694461	rs578521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q24.3		rs578521-C	NR	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1879	chr2	169695030	169695031	rs10930337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q24.3	NOSTRIN, SPC25	rs10930337-T	0.284523	4E-9		0.014398498	[0.0096-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr2	169695030	169695031	rs10930337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q24.3	NR	rs10930337-T	0.284759	2E-11		0.01471	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1879	chr2	169695112	169695113	rs526418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs526418-A	0.385379	7E-13				Affymetrix, Illumina [23472807] (imputed)	N
1879	chr2	169697961	169697962	rs28675349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q24.3		rs28675349-T	0.342933	4E-12		0.0319693	[0.023-0.041] unit increase	Illumina [13471440] (imputed)	N
1879	chr2	169697961	169697962	rs28675349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	2q24.3	NR	rs28675349-A	0.663174	5E-10		0.031258	[0.021-0.041] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1879	chr2	169697961	169697962	rs28675349	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs28675349-T	0.288133	3E-10				Affymetrix, Illumina [19872809] (imputed)	N
1879	chr2	169703659	169703660	rs531864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q24.3	NR	rs531864-T	0.349957	1E-10		0.01285	[0.009-0.0167] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1879	chr2	169703659	169703660	rs531864	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	2q24.3	NOSTRIN	rs531864-?	NR	8E-6	(Females)		[NR]	Illumina [283437]	N
1879	chr2	169703973	169703974	rs11676084	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.3	SPC25	rs11676084-?	NR	7E-6	(beta hydroxybutyric acid)	0.21127582	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1879	chr2	169703973	169703974	rs11676084	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q24.3	SPC25	rs11676084-?	NR	3E-7	(alpha hydroxybutyric acid)	0.23657537	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1879	chr2	169705103	169705104	rs566465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q24.3		rs566465-T	NR	5E-28		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1879	chr2	169705103	169705104	rs566465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q24.3		rs566465-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1879	chr2	169706078	169706079	rs2140046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q24.3		rs2140046-C	NR	8E-22		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1879	chr2	169706078	169706079	rs2140046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q24.3		rs2140046-C	NR	1E-31		0.0155	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1879	chr2	169706078	169706079	rs2140046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q24.3	NOSTRIN, SPC25	rs2140046-C	NR	3E-9		0.0173237	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1879	chr2	169706078	169706079	rs2140046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q24.3		rs2140046-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.319645	3E-26		0.025131434	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.319665	2E-23		0.023651734	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.319667	7E-21		0.022225723	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3194	5E-16		0.03124008	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3194	1E-14		0.02967715	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3195	1E-14		0.02965123	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3194	5E-14		0.02895036	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3194	1E-16		0.0321339	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707262	169707272	rs139707092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs139707092-A	0.3195	6E-15		0.03011005	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169707427	169707428	rs540652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q24.3		rs540652-?	NR	8E-52				NR [~ 8900000] (imputed)	N
1879	chr2	169707505	169707506	rs112438419	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs112438419-C	NR	2E-11		0.1002	[0.071-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
1879	chr2	169707505	169707506	rs112438419	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q24.3	NR	rs112438419-C	0.0122	5E-9	(NPC2)	0.07292	NR unit increase	Illumina [1671387] (imputed)	N
1879	chr2	169707551	169707552	rs488621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q24.3		rs488621-G	NR	1E-12		0.0148	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1879	chr2	169707551	169707552	rs488621	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q24.3	NOSTRIN	rs488621-A	0.5312	3E-24		0.0191	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
1879	chr2	169707551	169707552	rs488621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q24.3		rs488621-?	NR	8E-31				NR [~ 8900000] (imputed)	N
1879	chr2	169707551	169707552	rs488621	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q24.3	NOSTRIN, SPC25	rs488621-A	0.5333	3E-6		0.0318	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1879	chr2	169709756	169709757	rs527393	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q24.3		rs527393-A	NR	1E-32		0.0232	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1879	chr2	169709756	169709757	rs527393	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	2q24.3		rs527393-G	0.532	3E-8				Affymetrix [10369434] (imputed)	N
1879	chr2	169710606	169710607	rs11678685	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q24.3	NOSTRIN	rs11678685-A	0.32	5E-18		8.65	z-score increase	Affymetrix [4314223] (imputed)	N
1879	chr2	169710606	169710607	rs11678685	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q24.3	NR	rs11678685-A	0.31759	7E-35		0.024413	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1879	chr2	169711303	169711304	rs2685799	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	2q24.3	CPT2, C1orf123, MAGOH, LRP8	rs2685799-?		2E-10				NR [7428630] (imputed)	N
1879	chr2	169711303	169711304	rs2685799	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q24.3	TAGLN2, IGSF9	rs2685799-?		9E-15				NR [7428630] (imputed)	N
1879	chr2	169711303	169711304	rs2685799	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2q24.3	COL11A1	rs2685799-?		5E-10				NR [7428630] (imputed)	N
1879	chr2	169711694	169711695	rs78573157	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs78573157-T	NR	2E-14		0.0917	[0.068-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
1879	chr2	169715685	169715686	rs576062	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2q24.3		rs576062-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1879	chr2	169715685	169715686	rs576062	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q24.3	NOSTRIN, SPC25	rs576062-?		2E-8				NR [7428630] (imputed)	N
1879	chr2	169721380	169721381	rs3931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs3931-G	0.318355	3E-37				Affymetrix, Illumina [24649327] (imputed)	N
1879	chr2	169721380	169721381	rs3931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs3931-G	0.316742	4E-27				Affymetrix, Illumina [23114412] (imputed)	N
1879	chr2	169721380	169721381	rs3931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q24.3	NR	rs3931-G	0.319823	7E-29		0.022936	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1879	chr2	169721380	169721381	rs3931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q24.3	NR	rs3931-G	0.317234	1E-37				Affymetrix, Illumina [23467995] (imputed)	N
1879	chr2	169721380	169721381	rs3931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q24.3	NR	rs3931-G	0.319789	2E-30		0.022896	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1879	chr2	169721380	169721381	rs3931	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q24.3	NOSTRIN	rs3931-G	0.3208	8E-14		0.02844859	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1879	chr2	169734800	169734801	rs10497345	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	2q24.3	SPC25	rs10497345-?	NR	5E-11				NR [NR]	N
1879	chr2	169737850	169737851	rs524586	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q24.3	NR	rs524586-A	0.497485	3E-10		0.012098	[0.0083-0.0159] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1880	chr2	169742757	169742758	rs7582529	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	2q24.3	SPC25	rs7582529-T	0.1864	7E-13		0.0531	[0.037-0.07] unit decrease	Affymetrix, Illumina [27843817] (imputed)	N
1880	chr2	169747215	169747216	rs76372731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q24.3	NR	rs76372731-C	NR	1E-20		0.081	[0.064-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169747215	169747216	rs76372731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q24.3	NR	rs76372731-C	NR	1E-36		0.112	[0.095-0.129] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169748690	169748691	rs150171632	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q24.3	SPC25	rs150171632-T	0.0096	1E-8	(conditional)	0.0327	[0.016-0.049] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1880	chr2	169750482	169750483	rs477224	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	2q24.3	NR	rs477224-?	NR	6E-10		0.05931013	[0.041-0.078] unit decrease	Illumina [29713514] (imputed)	N
1880	chr2	169751555	169751556	rs483109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q24.3		rs483109-C	0.540849	5E-9		0.0199811	[0.013-0.027] unit decrease	Illumina [13479091] (imputed)	N
1880	chr2	169753414	169753415	rs13431652	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperglycemia in more-fat diet	10,707 European ancestry women	NA	2q24.3	G6PC2	rs13431652-?	NR	1E-9		1.3	[NR]	NR [18717781] (imputed)	N
1880	chr2	169753414	169753415	rs13431652	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperglycemia	11,794 European ancestry women	NA	2q24.3	G6PC2	rs13431652-?		7E-9		1.2658228	[NR]	NR [18717781] (imputed)	N
1880	chr2	169754161	169754162	rs151057583	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	2q24.3	G6PC2	rs151057583-T	0.8988	1E-13	(conditional)	0.0186	[0.0084-0.0288] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
1880	chr2	169754484	169754485	rs34177044	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood glucose	5,786 Chinese ancestry individuals	NA	2q24.3	G6PC2	rs34177044-A	0.37	7E-12		0.145	[0.1-0.19] unit increase	Illumina [8045193] (imputed)	N
1880	chr2	169754845	169754846	rs13387347	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood glucose	5,786 Chinese ancestry individuals	NA	2q24.3	SPC25, G6PC2	rs13387347-C	0.44	4E-8		0.047	[0.012-0.082] unit increase	Illumina [8045193] (imputed)	N
1880	chr2	169754845	169754846	rs13387347	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	2q24.3	G6PC2	rs13387347-T	0.541	1E-7		0.0203	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1880	chr2	169754845	169754846	rs13387347	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	2q24.3	G6PC2, ABCC11	rs13387347-?	NR	2E-36		0.114	[0.096-0.132] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
1880	chr2	169756929	169756930	rs540524	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q31.1	G6PC2	rs540524-A	0.6302	4E-32	(conditional)	0.0018	[-0.00075-0.00435] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1880	chr2	169756929	169756930	rs540524	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	2q31.1	G6PC2	rs540524-A	0.4301	1E-49	(conditional)	0.0388	[0.016-0.062] unit increase	Illumina, Perlegen [20274841] (imputed)	N
1880	chr2	169756929	169756930	rs540524	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2q31.1	G6PC2	rs540524-G	0.4	9E-27		0.113	[0.091-0.135] unit decrease	Affymetrix [774398] (imputed)	N
1880	chr2	169757353	169757354	rs1402837	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	2q31.1	G6PC2	rs1402837-T	0.3974	2E-33		0.0502	[0.041-0.059] unit increase	Affymetrix, Illumina [15438438] (imputed)	N
1880	chr2	169757353	169757354	rs1402837	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or HOMA-B	254,263 individuals	NA	2q31.1	SPC25, G6PC2	rs1402837-?	NR	1E-15				NR [NR]	N
1880	chr2	169757353	169757354	rs1402837	29844224	Loomis SJ	2018-05-29	Diabetes	Genome-Wide Association Study of Serum Fructosamine and Glycated Albumin in Adults Without Diagnosed Diabetes: Results from the Atherosclerosis Risk in Communities Study.	Hemoglobin A1c levels	7,647 European ancestry individuals, 2,104 Black individuals	NA	2q31.1	G6PC2	rs1402837-T	0.22	3E-7	(EA)	0.052	[0.032-0.072] unit increase	Affymetrix [NR] (imputed)	N
1880	chr2	169757353	169757354	rs1402837	19096518	Pare G	2008-12-19	PLoS Genet	Novel association of HK1 with glycated hemoglobin in a non-diabetic population: a genome-wide evaluation of 14,618 participants in the Women's Genome Health Study.	Glycated hemoglobin levels	14,618 European ancestry females	455 European ancestry individuals	2q31.1	G6PC2	rs1402837-A	0.23	5E-10		0.02	[NR] % increase	Illumina [337343]	N
1880	chr2	169757431	169757432	rs2232315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs2232315-A	NR	7E-10		0.0568	[0.039-0.075] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169757431	169757432	rs2232315	26861389	D'Adamo CR	2016-02-06	Nutrients	A Common Variant in the SETD7 Gene Predicts Serum Lycopene Concentrations.	Serum lycopene concentrations	441 Old Order Amish individuals from 308 families	NA	2q31.1	G6PC2	rs2232315-A	0.03	1E-6		0.74	[0.45-1.03] ug/dL increase	Affymetrix [2302013] (imputed)	N
1880	chr2	169763147	169763148	rs560887	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	2q31.1		rs560887-T	0.295543	8E-119		0.103814	[0.095-0.113] unit decrease	NR [11722792] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	2q31.1		rs560887-T	0.2961	2E-11		0.1102	[0.078-0.142] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	2q31.1		rs560887-T	0.2295	6E-19		0.1096	[0.085-0.134] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	2q31.1		rs560887-T	0.1583	1E-9		0.1186	[0.08-0.157] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	2q31.1		rs560887-T	0.2215	4E-85		0.1657	[0.15-0.18] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	2q31.1		rs560887-T	0.2935	1E-48		0.163	[0.14-0.18] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	16,018 Hispanic or Latin American individuals	NA	2q31.1		rs560887-T	0.1633	2E-33		0.172	[0.14-0.2] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	12,195 African American or Afro-Caribbean individuals	NA	2q31.1		rs560887-T	0.0688	3E-9		0.1678	[0.11-0.22] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting glucose	4,734 individuals	NA	2q31.1		rs560887-C	0.679018613	3E-11		0.145682	[0.1-0.19] mmol/l increase	Illumina [7701709] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.1		rs560887-C	NR	5E-18		0.0197	[0.015-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q31.1		rs560887-C	NR	2E-379		0.1024	[0.098-0.107] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2q31.1		rs560887-C	NR	1E-707		0.1491	[0.14-0.15] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-T	0.301	6E-122		0.0307	[0.028-0.033] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-T	0.3019	3E-367		0.0747	[0.071-0.078] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1880	chr2	169763147	169763148	rs560887	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	2q31.1	G6PC2	rs560887-T	0.1565	8E-39		0.0906	[0.077-0.105] unit decrease	Affymetrix, Illumina [28177426] (imputed)	N
1880	chr2	169763147	169763148	rs560887	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2q31.1	G6PC2	rs560887-C	0.97	1E-30		0.319	[0.26-0.37] unit increase	Affymetrix [774398] (imputed)	N
1880	chr2	169763147	169763148	rs560887	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	2q31.1	G6PC2	rs560887-C	0.685027	8E-92		0.067414	[0.061-0.074] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	2q31.1	G6PC2	rs560887-C	0.685027	4E-81		0.068552	[0.062-0.076] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-C	0.685027	7E-190		0.068941	[0.064-0.074] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	2q31.1	NR	rs560887-?	NR	5E-9		0.1106516	[0.074-0.148] unit increase	Illumina [22871999] (imputed)	N
1880	chr2	169763147	169763148	rs560887	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	2q31.1	NR	rs560887-?	NR	9E-35		0.1642798	[0.14-0.19] unit increase	Illumina [29713514] (imputed)	N
1880	chr2	169763147	169763148	rs560887	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2q31.1	G6PC2	rs560887-C	0.700833	1E-14		0.025535	[0.019-0.032] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1880	chr2	169763147	169763148	rs560887	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q31.1	G6PC2	rs560887-T	0.2971	4E-19		0.1676	[0.13-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-C	0.6843	1E-58		0.0284	[0.025-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	2q31.1	G6PC2	rs560887-C	0.2907	6E-68		0.22435525	[0.2-0.25] mmol/L increase	Illumina [24111857] (imputed)	N
1880	chr2	169763147	169763148	rs560887	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	2q31.1	G6PC2	rs560887-C	0.2907	2E-75	(Non diabetics)	0.24374136	[0.22-0.27] mmol/L increase	Illumina [24111857] (imputed)	N
1880	chr2	169763147	169763148	rs560887	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-C	0.7	3E-32	(Glucose)	0.12	[0.1-0.14] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
1880	chr2	169763147	169763148	rs560887	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	2q31.1	G6PC2	rs560887-A	0.258483922703246	4E-87		0.079494834	[0.072-0.087] unit decrease	Illumina [197481]	N
1880	chr2	169763147	169763148	rs560887	24405752	An P	2013-12-04	Metabolism	Genome-wide association study identifies common loci influencing circulating glycated hemoglobin (HbA1c) levels in non-diabetic subjects: the Long Life Family Study (LLFS).	Glycated hemoglobin levels	4,088 European ancestry non-diabetic elderly individuals	up to 47,822 European ancestry non-diabetic elderly individuals	2q31.1	G6PC2	rs560887-T	0.33	1E-17		0.032	[0.024-0.040] unit decrease	Illumina [9250000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	2q31.1	G6PC2	rs560887-T	0.291	2E-16	(FPG)	0.0061	[NR] unit decrease	Illumina [up to 945994] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-?	0.31	4E-15				Illumina [~ 2000000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2q31.1	G6PC2	rs560887-T	0.2965	2E-113		1.0E-4	[-0.00131-0.00151] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	2q31.1	G6PC2	rs560887-T	0.2987	3E-99		0.0715	[0.065-0.078] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22508271	Rasmussen-Torvik LJ	2012-04-16	Genet Epidemiol	Fasting glucose GWAS candidate region analysis across ethnic groups in the Multiethnic Study of Atherosclerosis (MESA).	Fasting plasma glucose	2,349 European ancestry individuals, 664 Chinese ancestry individuals, 1,366 African American individuals, 1,171 Hispanic individuals	NA	2q31.1	G6PC2	rs560887-T	0.20	2E-6	(fasting glucose)	1.29	[0.84-1.74] mg/dL decrease	Affymetrix [NR] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22399527	Kristiansson K	2012-03-07	Circ Cardiovasc Genet	Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.	Metabolic syndrome	2,637 European ancestry cases, 7,927 European ancestry controls	NA	2q31.1	G6PC2	rs560887-G	0.69	5E-26	(GLU)	0.15	[NR] mmol/l increase	Illumina [1257079] (imputed)	N
1880	chr2	169763147	169763148	rs560887	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-?	NR	2E-17	(Glc)	0.15	[0.11-0.19] unit increase	Illumina [~ 7700000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	2q31.1	G6PC2	rs560887-C	0.7	2E-66		0.042	[0.034-0.05] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	2q31.1	G6PC2	rs560887-C	0.7	9E-218		0.075	[0.069-0.081] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1880	chr2	169763147	169763148	rs560887	19060910	Sabatti C	2008-12-07	Nat Genet	Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.	Metabolic traits	4,763 Northern Finnish founder individuals	NA	2q31.1	G6PC2, ABCB11	rs560887-A	0.31	6E-10	(GLU)	0.06	[0.04-0.07] mmol/l decrease	Illumina [329091]	N
1880	chr2	169763147	169763148	rs560887	19060907	Prokopenko I	2008-12-01	Nat Genet	Variants in MTNR1B influence fasting glucose levels.	Fasting plasma glucose	35,812 European ancestry individuals	NA	2q31.1	G6PC2	rs560887-C	0.70	1E-57		0.06	[0.05-0.07] mmol/l increase	Affymetrix, Illumina, Perlegen [up to 2557249] (imputed)	N
1880	chr2	169763147	169763148	rs560887	18451265	Bouatia-Naji N	2008-06-19	Science	A polymorphism within the G6PC2 gene is associated with fasting plasma glucose levels.	Fasting plasma glucose	654 European ancestry individuals	9,353 European ancestry individuals	2q31.1	G6PC2	rs560887-A	0.30	4E-23		0.06	[0.05-0.08] mmol/l decrease	Illumina [392935]	N
1880	chr2	169763261	169763262	rs138726309	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	2q31.1		rs138726309-?	NR	8E-21		0.175675	[0.14-0.21] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169763261	169763262	rs138726309	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	2q31.1		rs138726309-?	NR	9E-30		0.240222	[0.2-0.28] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169763261	169763262	rs138726309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs138726309-T	NR	2E-14		0.1811	[0.13-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169763261	169763262	rs138726309	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs138726309-T	NR	4E-25		0.25	[0.2-0.3] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169764140	169764141	rs2232323	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	2q31.1		rs2232323-?	NR	3E-56		0.208261	[0.18-0.23] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169764140	169764141	rs2232323	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	2q31.1		rs2232323-?	NR	4E-78		0.277936	[0.25-0.31] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169764140	169764141	rs2232323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs2232323-C	NR	1E-31		0.1831	[0.15-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169764140	169764141	rs2232323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs2232323-C	NR	7E-60		0.2607	[0.23-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169764175	169764176	rs492594	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	2q31.1	G6PC2	rs492594-C	0.6058	1E-76	(conditional)	0.0322	[0.0089-0.0555] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
1880	chr2	169764175	169764176	rs492594	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	2q31.1	G6PC2	rs492594-C	0.48	6E-9		0.02	[0.012-0.028] unit increase	Illumina [106489]	N
1880	chr2	169764367	169764368	rs146779637	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	2q31.1		rs146779637-?	NR	2E-30		0.207714	[0.17-0.24] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169764367	169764368	rs146779637	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	2q31.1		rs146779637-?	NR	6E-51		0.305696	[0.27-0.35] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169764490	169764491	rs2232326	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Blood glucose levels	400,458 European ancestry individuals	NA	2q31.1		rs2232326-?	NR	1E-22		0.277082	[0.22-0.33] unit decrease	NR [9800000] (imputed)	N
1880	chr2	169764490	169764491	rs2232326	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2q31.1	G6PC2	rs2232326-C	0.05	4E-77		0.457	[0.41-0.51] unit decrease	Affymetrix [774398] (imputed)	N
1880	chr2	169764490	169764491	rs2232326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs2232326-C	NR	2E-20		0.2783	[0.22-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169764490	169764491	rs2232326	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood glucose	5,786 Chinese ancestry individuals	NA	2q31.1	G6PC2	rs2232326-T	0.96	2E-9		0.252	[0.17-0.33] unit increase	Illumina [8045193] (imputed)	N
1880	chr2	169764490	169764491	rs2232326	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	2q31.1	NR	rs2232326-?	NR	3E-16		0.148	[0.11-0.18] unit decrease novel	Illumina [6108953] (imputed)	N
1880	chr2	169764545	169764546	rs2232328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs2232328-G	NR	3E-25		0.0422	[0.034-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169764545	169764546	rs2232328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs2232328-G	NR	1E-81		0.0792	[0.071-0.087] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169765276	169765277	rs145353824	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	2q31.1	G6PC2	rs145353824-A	0.9748	2E-11	(conditional)	0.0766	[0.0027-0.1505] unit decrease	Illumina, Perlegen [20274841] (imputed)	N
1880	chr2	169767147	169767148	rs12053049	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	2q31.1	G6PC2	rs12053049-?	NR	1E-11		0.04752	[0.034-0.061] unit increase novel	Illumina [6108953] (imputed)	N
1880	chr2	169767147	169767148	rs12053049	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	2q31.1	G6PC2	rs12053049-?	NR	3E-37		0.06091	[0.052-0.07] unit increase novel	Illumina [6108953] (imputed)	N
1880	chr2	169768890	169768891	rs13430620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs13430620-C	NR	8E-37		0.0754	[0.064-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169768890	169768891	rs13430620	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs13430620-C	NR	4E-60		0.0993	[0.087-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169771419	169771420	rs13419326	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	2q31.1	G6PC2	rs13419326-A	0.6824	7E-18		0.0244	[0.019-0.03] unit decrease	Affymetrix, Illumina [15728197] (imputed)	N
1880	chr2	169773337	169773338	rs72884870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs72884870-G	NR	2E-22		0.0788	[0.063-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169773337	169773338	rs72884870	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs72884870-G	NR	6E-30		0.0939	[0.078-0.11] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169774070	169774071	rs563694	18521185	Chen WM	2008-06-04	J Clin Invest	Variations in the G6PC2/ABCB11 genomic region are associated with fasting glucose levels.	Fasting plasma glucose	5,088 European ancestry individuals	18,436 European ancestry individuals	2q31.1	G6PC2, ABCB11	rs563694-C	0.34	4E-7				Illumina [315635]	N
1880	chr2	169776222	169776223	rs74870851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	2q31.1		rs74870851-G	0.380308	9E-26		0.0370552	[0.03-0.044] unit increase	Illumina [13476509] (imputed)	N
1880	chr2	169776359	169776360	rs578763	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	2q31.1	G6PC2	rs578763-?	NR	2E-13				NR [3144808] (imputed)	N
1880	chr2	169777594	169777595	rs557462	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	2q31.1	ABCB11	rs557462-T	0.8089	5E-9		0.0328	[0.022-0.044] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
1880	chr2	169777594	169777595	rs557462	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	2q31.1	ABCB11, G6PC2	rs557462-C	0.182	6E-29		0.03	[0.01-0.05] % decrease	Illumina [11510031] (imputed)	N
1880	chr2	169780152	169780153	rs886043366	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	2q31.1		rs886043366-?	NR	3E-9		0.818037	[0.51-1.12] unit increase	NR [9800000] (imputed)	N
1880	chr2	169782879	169782880	rs569805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs569805-T	NR	2E-14		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169782879	169782880	rs569805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs569805-T	NR	2E-277		0.0913	[0.086-0.096] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169782879	169782880	rs569805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs569805-T	NR	4E-549		0.1311	[0.13-0.14] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169782879	169782880	rs569805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q31.1	NR	rs569805-T	NR	1E-15		0.0201	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169782879	169782880	rs569805	21386085	Kraja AT	2011-03-08	Diabetes	A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.	Metabolic syndrome (bivariate traits)	22,161 European ancestry individuals	NA	2q31.1	ABCB11	rs569805-A	NR	9E-8	(HDLC-GLUC)	0.16	[0.10-0.22] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1880	chr2	169784412	169784413	rs16856247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs16856247-T	NR	1E-15		0.0759	[0.057-0.095] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169784412	169784413	rs16856247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs16856247-T	NR	3E-19		0.0858	[0.067-0.105] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169784412	169784413	rs16856247	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	2q31.1	NR	rs16856247-?	NR	2E-8		0.08447692	[0.055-0.114] unit increase	Illumina [29713514] (imputed)	N
1880	chr2	169784412	169784413	rs16856247	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood glucose	5,786 Chinese ancestry individuals	NA	2q31.1	ABCB11	rs16856247-T	0.3	1E-7		0.099	[0.062-0.136] unit increase	Illumina [8045193] (imputed)	N
1880	chr2	169784412	169784413	rs16856247	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	2q31.1	ABCB11	rs16856247-T	0.35	2E-15	(FPG)	0.0556	[0.042-0.069] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1880	chr2	169790258	169790258	rs112259853	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q31.1	intergenic	rs112259853-T	0.341	3E-8		0.1435	[0.093-0.194] mmHg decrease	Affymetrix [NR] (imputed)	N
1880	chr2	169791437	169791438	rs552976	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q31.1		rs552976-A	0.3519	3E-9		0.13040785	[0.084-0.176] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1880	chr2	169791437	169791438	rs552976	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q31.1		rs552976-A	0.3519	4E-25		0.15982158	[0.13-0.19] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1880	chr2	169791437	169791438	rs552976	29483669	Appel EVR	2018-02-26	Eur J Hum Genet	Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population.	Glycated hemoglobin levels	4,049 individuals	6,006 European ancestry individuals	2q31.1	G6PC2	rs552976-A	0.36	5E-10		0.1	[0.069-0.131] unit decrease	Illumina [112277]	N
1880	chr2	169791437	169791438	rs552976	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	2q31.1	G6PC2, ABCB11	rs552976-G	0.64	8E-18		0.05	[0.04-0.06] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1880	chr2	169792170	169792171	rs3755157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	2q31.1		rs3755157-T	0.382012	3E-8		0.0238927	[0.015-0.032] unit increase	Illumina [13466143] (imputed)	N
1880	chr2	169792170	169792171	rs3755157	29170429	Hachiya T	2017-11-23	Sci Rep	Genome-wide meta-analysis in Japanese populations identifies novel variants at the TMC6-TMC8 and SIX3-SIX2 loci associated with HbA1c.	Glycated hemoglobin levels	7,704 Japanese ancestry individuals	NA	2q31.1	G6PC2, ABCB11	rs3755157-T	0.383	4E-6		0.0235	[0.014-0.033] unit increase	Illumina [7135436] (imputed)	N
1880	chr2	169792170	169792171	rs3755157	24647736	Chen P	2014-03-19	Diabetes	Multiple nonglycemic genomic loci are newly associated with blood level of glycated hemoglobin in East Asians.	Glycated hemoglobin levels	17,290 East Asian ancestry individuals, 1,727 Malay ancestry individuals	up to 13,585 East Asian ancestry individuals	2q31.1	G6PC2, ABCB11	rs3755157-T	0.34	3E-11		0.07	[0.050-0.090] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
1880	chr2	169801487	169801488	rs853789	29743933	Wu B	2018-03-18	Comput Math Methods Med	Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits.	Glycemic traits (multi-trait analysis)	5,947 European ancestry individuals	NA	2q31.1	NR	rs853789-?	NR	1E-14				NR [~ 2500000] (imputed)	N
1880	chr2	169803567	169803568	rs16856261	33500527	Park JM	2021-01-26	Sci Rep	Understanding the genetic architecture of the metabolically unhealthy normal weight and metabolically healthy obese phenotypes in a Korean population.	Metabolically unhealthy in normal weight	10,358 Korean ancestry cases, 23,466 Korean ancestry controls	NA	2q31.1	ABCB11	rs16856261-T	0.37	2E-9		1.12	[1.08-1.16]	Affymetrix [7975321]	N
1880	chr2	169812216	169812217	rs853777	34753797	Riveros-Mckay F	2021-11-09	Diabetes	An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript.	Fructosamine levels	20,731 European ancestry individuals	NA	2q31.1	ABCB11	rs853777-C	0.35	9E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix [19100024] (imputed)	N
1880	chr2	169812216	169812217	rs853777	34753797	Riveros-Mckay F	2021-11-09	Diabetes	An Expanded Genome-Wide Association Study of Fructosamine Levels Identifies RCN3 as a Replicating Locus and Implicates FCGRT as the Effector Transcript.	Fructosamine levels	20,731 European ancestry individuals	7,647 European ancestry individuals	2q31.1	ABCB11	rs853777-C	0.35	9E-7		0.0058	[0.0034-0.0082] unit decrease	Affymetrix [19100024] (imputed)	N
1880	chr2	169815247	169815248	rs73018724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs73018724-G	NR	6E-27		0.058	[0.047-0.069] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169815247	169815248	rs73018724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs73018724-G	NR	6E-43		0.0755	[0.065-0.086] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169816669	169816670	rs76031050	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs76031050-A	NR	2E-11		0.0425	[0.03-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169817712	169817713	rs16823014	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Egg allergy	217 European ancestry child cases, 144 European ancestry non-allergic non-sensitized normal child controls, 688 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	2q31.1	ABCB11	rs16823014-?	NR	4E-6				Illumina [6459842] (imputed)	N
1880	chr2	169818034	169818035	rs4148797	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q31.1	NR	rs4148797-C	0.327	1E-6	(IFNGR1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1880	chr2	169820617	169820618	rs4148796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs4148796-G	NR	6E-12		0.0192	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169820617	169820618	rs4148796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs4148796-G	NR	3E-28		0.0315	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169820800	169820801	rs138642043	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	2q31.1		rs138642043-?	NR	3E-23		0.197428	[0.16-0.24] unit increase	NR [9800000] (imputed)	N
1880	chr2	169822146	169822147	rs113805872	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs113805872-T	NR	5E-14		0.0773	[0.057-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1880	chr2	169823866	169823867	rs3770585	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q31.1		rs3770585-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1880	chr2	169826468	169826469	rs7576531	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	2q31.1	ABCB11, SPC25, G6PC2, DHRS9	rs7576531-T	0.04	1E-6		1.64	[1.01-2.27] unit increase	Illumina [8437147] (imputed)	N
1880	chr2	169828852	169828853	rs72888603	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q31.1		rs72888603-A	0.564414	5E-9		0.025306	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1880	chr2	169828852	169828853	rs72888603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q31.1	ABCB11	rs72888603-T	0.435092	4E-13		0.017850162	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1880	chr2	169828852	169828853	rs72888603	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q31.1	ABCB11	rs72888603-A	0.565528	4E-22		0.0222423	[0.018-0.027] unit increase	Affymetrix [NR] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	2q31.1		rs3770586-C	0.516005	3E-8		0.021878	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	2q31.1		rs3770586-C	0.51602	1E-8		0.0222426	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	2q31.1		rs3770586-C	0.51602	3E-9		0.0239799	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q31.1		rs3770586-C	0.516005	2E-9		0.0250181	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	2q31.1		rs3770586-C	0.51602	2E-8		0.0219932	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1880	chr2	169828994	169828995	rs3770586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	2q31.1		rs3770586-C	0.51602	1E-8		0.0229768	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1880	chr2	169829771	169829772	rs2389606	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q31.1	ABCB11	rs2389606-T	0.5793	2E-8		0.0149	[0.0098-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1880	chr2	169830154	169830155	rs2287623	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287623-G	NR	7E-8		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830154	169830155	rs2287623	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287623-G	0.403	9E-7	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830154	169830155	rs2287623	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287623-G	NR	6E-8		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830154	169830155	rs2287623	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287623-G	0.403	8E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830154	169830155	rs2287623	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q31.1	ABCB11	rs2287623-G	0.41	4E-12		0.027	[NR] unit increase	NR [NR] (imputed)	N
1880	chr2	169830327	169830328	rs2287622	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q31.1	ABCB11	rs2287622-A	0.397204	3E-23		0.0211456	[0.017-0.025] unit increase	Affymetrix [NR] (imputed)	N
1880	chr2	169830327	169830328	rs2287622	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2q31.1	ABCB11	rs2287622-A	0.405	7E-13	(Trans-ethnic initial)	0.0266	[0.02-0.034] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1880	chr2	169830514	169830515	rs2287621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287621-G	NR	1E-8		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830514	169830515	rs2287621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287621-G	0.37	8E-7	(EA)	0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830514	169830515	rs2287621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287621-G	NR	4E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830514	169830515	rs2287621	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q31.1	NR	rs2287621-G	0.37	3E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q31.1		rs10176901-A	NR	3E-22		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q31.1	ABCB11	rs10176901-A	NR	9E-13				Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q31.1	ABCB11	rs10176901-A	NR	2E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q31.1	ABCB11	rs10176901-A	NR	8E-15				Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q31.1	ABCB11	rs10176901-A	NR	7E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q31.1	ABCB11	rs10176901-A	NR	4E-6	(EA)	0.831	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q31.1	ABCB11	rs10176901-A	NR	2E-7		0.706	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1880	chr2	169830660	169830661	rs10176901	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	2q31.1	NR	rs10176901-A	0.5898	2E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
1880	chr2	169830797	169830798	rs10177080	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q31.1	ABCB11	rs10177080-A	0.5435	3E-12		0.0189	[0.014-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1880	chr2	169831176	169831177	rs12989783	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q31.1		rs12989783-A	NR	6E-19		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1880	chr2	169834369	169834370	rs72623176	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q31.1	ABCB11	rs72623176-A	0.039	9E-27		10.7	z-score increase	Affymetrix [4312306] (imputed)	N
1880	chr2	169834369	169834370	rs72623176	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs72623176-?		3E-18		0.0397	[0.031-0.049] unit decrease	Illumina [31500000] (imputed)	N
1880	chr2	169834369	169834370	rs72623176	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs72623176-?	NR	1E-18		0.03851	[0.03-0.047] unit increase novel	Illumina [6108953] (imputed)	N
1880	chr2	169840573	169840574	rs16856332	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	2q31.1	ABCB11	rs16856332-T	0.96	2E-9		3.9	[1.20-6.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1880	chr2	169847328	169847329	rs11568372	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	2q31.1		rs11568372-?	NR	6E-15		0.408413	[0.3-0.51] unit increase	NR [9800000] (imputed)	N
1880	chr2	169847328	169847329	rs11568372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs11568372-C	NR	9E-11		0.4299	[0.3-0.56] unit increase	Affymetrix [9000000] (imputed)	N
1880	chr2	169853219	169853220	rs11568377	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	2q31.1	ABCB11	rs11568377-A	0.17	4E-6		1.64	[0.95-2.33] mmHg decrease	Illumina [1019297] (imputed)	N
1880	chr2	169859715	169859716	rs112779928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	2q31.1		rs112779928-T	0.326124	1E-19		0.0335484	[0.026-0.041] unit increase	Illumina [13476165] (imputed)	N
1880	chr2	169859832	169859833	rs572897763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q31.1		rs572897763-T	NR	3E-58		0.0996	[0.087-0.112] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1880	chr2	169860717	169860718	rs10200158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q31.1		rs10200158-G	NR	5E-43		0.0399	[0.034-0.046] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1880	chr2	169866413	169866414	rs12613034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q31.1		rs12613034-T	NR	7E-32		0.0345	[0.029-0.04] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1880	chr2	169866413	169866414	rs12613034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q31.1		rs12613034-T	NR	8E-25		0.0306	[0.025-0.036] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1880	chr2	169866413	169866414	rs12613034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	2q31.1		rs12613034-T	0.327469	2E-20		0.0341896	[0.027-0.041] unit increase	Illumina [13478956] (imputed)	N
1880	chr2	169866413	169866414	rs12613034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	2q31.1		rs12613034-T	0.327588	2E-32		0.042778	[0.036-0.05] unit increase	Illumina [13478866] (imputed)	N
1881	chr2	169870294	169870295	rs2241339	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs2241339-?		1E-15		0.033	[0.025-0.041] unit decrease	Illumina [31500000] (imputed)	N
1881	chr2	169870294	169870295	rs2241339	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs2241339-?		9E-31		0.0469	[0.039-0.055] unit decrease	Illumina [31500000] (imputed)	N
1881	chr2	169870294	169870295	rs2241339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs2241339-?	NR	3E-17		0.03362	[0.026-0.041] unit increase novel	Illumina [6108953] (imputed)	N
1881	chr2	169870294	169870295	rs2241339	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	2q31.1	ABCB11	rs2241339-?	NR	5E-29		0.04498	[0.037-0.053] unit increase	Illumina [6108953] (imputed)	N
1881	chr2	169875244	169875245	rs3755162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs3755162-T	NR	9E-60		0.1025	[0.09-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169875244	169875245	rs3755162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs3755162-T	NR	1E-16		0.052	[0.04-0.064] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169875244	169875245	rs3755162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2q31.1	NR	rs3755162-T	NR	4E-12		0.0438	[0.031-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169875244	169875245	rs3755162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.1	NR	rs3755162-T	NR	8E-15		0.0488	[0.036-0.061] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	5E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	4E-14		0.0193	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	1E-10		0.0165	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	8E-11		0.0165	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	1E-9		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169880177	169880178	rs7602171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q31.1	NR	rs7602171-G	NR	8E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169889578	169889579	rs4148765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs4148765-T	NR	1E-15		0.0357	[0.027-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169889578	169889579	rs4148765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs4148765-T	NR	3E-12		0.0311	[0.022-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169893418	169893419	rs2161037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q31.1		rs2161037-A	NR	4E-20		0.0203	[0.016-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1881	chr2	169893418	169893419	rs2161037	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q31.1	ABCB11, DHRS9	rs2161037-G	0.45	1E-48		14.7	z-score increase	Affymetrix [4311822] (imputed)	N
1881	chr2	169893418	169893419	rs2161037	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q31.1	NR	rs2161037-G	0.454834	9E-28		0.0226072	[0.019-0.027] unit decrease	NR [NR]	N
1881	chr2	169893418	169893419	rs2161037	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2q31.1	intergenic	rs2161037-A	0.5439	7E-11		0.02301361	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1881	chr2	169902916	169902917	rs4668116	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2q31.1	NR	rs4668116-C	NR	7E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169903481	169903482	rs2389602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	2q31.1		rs2389602-T	0.551393	4E-9		0.023025	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169912190	169912191	rs2389599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2q31.1		rs2389599-G	0.475199	2E-8		0.0228444	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169912190	169912191	rs2389599	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	2q31.1		rs2389599-G	0.475189	2E-8		0.0230778	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169925860	169925861	rs2287611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs2287611-G	NR	8E-21		0.0334	[0.026-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169925860	169925861	rs2287611	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.1	NR	rs2287611-G	NR	3E-11		0.0237	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	2E-8		0.0229887	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	2E-10		0.026257	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	2E-9		0.0247609	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	8E-11		0.0267454	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	1E-8		0.0235746	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	1E-8		0.023474	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169931266	169931266	rs66927685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	2q31.1		rs66927685-T	0.472957	3E-8		0.0228641	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
1881	chr2	169933740	169933741	rs1862069	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q31.1	DHRS9	rs1862069-G	0.460326	1E-27		0.00545753	[0.0044-0.0065] unit decrease	Affymetrix [13995440] (imputed)	N
1881	chr2	169933740	169933741	rs1862069	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2q31.1	DHRS9	rs1862069-G	0.460356	4E-22		0.00364582	[0.0029-0.0044] unit decrease	Affymetrix [13995440] (imputed)	N
1881	chr2	169933740	169933741	rs1862069	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q31.1	DHRS9	rs1862069-G	0.459953	1E-9		0.0119808	[0.0081-0.0158] unit decrease	Affymetrix [NR] (imputed)	N
1881	chr2	169933740	169933741	rs1862069	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	2q31.1	DHRS9	rs1862069-A	0.496	6E-10		0.03	[0.04-0.02] unit decrease	Illumina [NR] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	4E-49		0.0351	[0.03-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	1E-21		0.0228	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	2E-12		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	4E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1881	chr2	169961896	169961897	rs12328794	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.1	NR	rs12328794-C	NR	2E-12		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169963350	169963351	rs115654069	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	2q31.1	NR	rs115654069-T	NR	4E-9		0.0728	[0.049-0.097] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169967700	169967701	rs76713517	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q31.1		rs76713517-T	0.0139264	4E-9		0.0922852	[0.061-0.123] unit increase	Illumina [7980478] (imputed)	N
1881	chr2	169967700	169967701	rs76713517	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	2q31.1		rs76713517-T	0.0139264	5E-10		0.119809	[0.082-0.158] unit increase	Illumina [7980478] (imputed)	N
1881	chr2	169968111	169968112	rs139689260	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q31.1	DHRS9	rs139689260-T	0.0152414252900142	8E-6	(F_Streptococcaceae_HB)	1.22268	[0.68-1.76] unit decrease	Illumina [7711310] (imputed)	N
1881	chr2	169985417	169985418	rs41268683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs41268683-C	NR	4E-9		0.0289	[0.019-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1881	chr2	169991063	169991064	rs7576280	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	2q31.1	NR	rs7576280-?	NR	9E-6	(Richness)	14.2896	[8.03-20.55] unit decrease	Illumina [5293637] (imputed)	N
1881	chr2	169995580	169995581	rs35472707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q31.1	LRP2	rs35472707-T	0.0501	2E-25		0.0073	[0.0057-0.0089] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1881	chr2	169995580	169995581	rs35472707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q31.1	LRP2	rs35472707-T	0.0504	5E-25		0.0075	[0.0059-0.0091] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1881	chr2	169995580	169995581	rs35472707	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q31.1	LRP2	rs35472707-T	0.048	1E-6		0.496	[-0.02928-1.02128] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1881	chr2	169995580	169995581	rs35472707	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2q31.1	LRP2	rs35472707-?	NR	4E-6				Affymetrix, Illumina [up to 10971307] (imputed)	N
1882	chr2	170006939	170006940	rs755631	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.1	LRP2	rs755631-A	0.534	1E-9		0.0018	[0.0012-0.0024] unit increase	Affymetrix [NR] (imputed)	N
1882	chr2	170008505	170008506	rs4667594	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.1	LRP2	rs4667594-A	0.5305	3E-9	(EA)	0.0021	[0.0013-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
1882	chr2	170008505	170008506	rs4667594	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	2q31.1	LRP2	rs4667594-A	0.53	4E-8	(EA)	0.0044	[0.0028-0.006] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1882	chr2	170010984	170010985	rs2075252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q31.1		rs2075252-C	NR	2E-40		0.0261	[0.022-0.03] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1882	chr2	170010984	170010985	rs2075252	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	2q31.1	LRP2	rs2075252-T	0.24	2E-8		1.13	[1.08-1.18]	Affymetrix [710030]	N
1882	chr2	170010984	170010985	rs2075252	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria (moderate to severe)	25,317 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q31.1	LRP2	rs2075252-T	0.2619	4E-6		1.066	[1.04-1.10]	Illumina [32500000] (imputed)	N
1882	chr2	170010984	170010985	rs2075252	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria (mild)	28,692 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q31.1	LRP2	rs2075252-T	0.26193	3E-10		1.085	[1.06-1.12]	Illumina [32500000] (imputed)	N
1882	chr2	170010984	170010985	rs2075252	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Proteinuria	54,009 Icelandic ancestry cases, 91,538 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q31.1	LRP2	rs2075252-T	0.2619	1E-11		1.076	[1.06-1.10]	Illumina [32500000] (imputed)	N
1882	chr2	170011457	170011458	rs2075251	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q31.1	LRP2	rs2075251-A	0.657	7E-27		0.0371	[0.03-0.044] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1882	chr2	170011457	170011458	rs2075251	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q31.1	NR	rs2075251-A	0.6411	1E-7	(women)	0.0264	[0.017-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1882	chr2	170011457	170011458	rs2075251	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q31.1	NR	rs2075251-A	0.6186	2E-14	(men)	0.0415	[0.031-0.052] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1882	chr2	170011457	170011458	rs2075251	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	2q31.1	NR	rs2075251-?	NR	2E-11		0.02911	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
1882	chr2	170012451	170012452	rs3815573	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2q31.1	LRP2	rs3815573-A	0.451	7E-11		0.341	[0.24-0.44] unit increase	Affymetrix [NR] (imputed)	N
1882	chr2	170020856	170020857	rs2268374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q31.1		rs2268374-T	NR	3E-11		0.0119	[0.0084-0.0154] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1882	chr2	170020856	170020857	rs2268374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	2q31.1		rs2268374-T	0.445492	5E-9		0.0180371	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
1882	chr2	170020856	170020857	rs2268374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q31.1		rs2268374-T	NR	2E-10		0.0117	[0.0082-0.0152] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1882	chr2	170020856	170020857	rs2268374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2q31.1		rs2268374-T	0.445288	1E-8		0.0179712	[0.012-0.024] unit increase	Illumina [13478961] (imputed)	N
1882	chr2	170027152	170027153	rs200475391	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	2q31.1		rs200475391-?	NR	2E-11		0.273398	[0.19-0.35] unit decrease	NR [9800000] (imputed)	N
1882	chr2	170029656	170029657	rs34355135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs34355135-T	NR	5E-10		0.1033	[0.071-0.136] unit increase	Affymetrix [9000000] (imputed)	N
1882	chr2	170029656	170029657	rs34355135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs34355135-T	NR	4E-16		0.135	[0.1-0.17] unit increase	Affymetrix [9000000] (imputed)	N
1882	chr2	170029656	170029657	rs34355135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q31.1	NR	rs34355135-T	NR	7E-10		0.1024	[0.07-0.135] unit decrease	Affymetrix [9000000] (imputed)	N
1882	chr2	170029656	170029657	rs34355135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs34355135-T	NR	2E-16		0.1363	[0.1-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
1882	chr2	170033994	170033995	rs7565788	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q31.1	NR	rs7565788-T	0.25	9E-35		0.026	[0.022-0.03] unit increase	NR [NR]	N
1882	chr2	170037102	170037103	rs9287910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q31.1		rs9287910-T	NR	4E-8		0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1882	chr2	170037293	170037294	rs9287911	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q31.1	LRP2	rs9287911-A	0.2497	1E-17		0.038206	[0.029-0.047] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1882	chr2	170039827	170039828	rs79028167	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q31.1	LRP2	rs79028167-T	0.0133985389781261	6E-6	(O_Lactobacillales_HB)	1.34147	[0.76-1.92] unit decrease	Illumina [7711310] (imputed)	N
1882	chr2	170044767	170044768	rs142093111	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	2q31.1	LRP2	rs142093111-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1882	chr2	170063222	170063223	rs147287428	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	2q31.1	LRP2	rs147287428-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1882	chr2	170063222	170063223	rs147287428	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	2q31.1	LRP2	rs147287428-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1882	chr2	170067946	170067947	rs11689553	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q31.1	LRP2	rs11689553-?	NR	4E-11		0.5383	[0.38-0.69] unit increase	Affymetrix [11100000] (imputed)	N
1882	chr2	170078802	170078803	rs7569236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs7569236-T	NR	8E-11		0.0333	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
1882	chr2	170078802	170078803	rs7569236	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs7569236-T	NR	2E-11		0.0344	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1882	chr2	170088854	170088855	rs189798425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q31.1		rs189798425-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1882	chr2	170093741	170093742	rs200469773	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	2q31.1	LRP2	rs200469773-?	1.99521E-4	2E-16				Illumina [~ 244000]	N
1882	chr2	170093741	170093742	rs200469773	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	2q31.1	LRP2	rs200469773-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
1882	chr2	170094168	170094169	rs2268365	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	2q31.1	LRP2	rs2268365-?	NR	5E-8	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1882	chr2	170113033	170113034	rs830958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs830958-T	NR	2E-11		0.0257	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1882	chr2	170117810	170117811	rs12988804	28739605	Zhou Y	2017-07-24	J Neurol Neurosurg Psychiatry	Genetic variation in the gene LRP2 increases relapse risk in multiple sclerosis.	Relapse in multiple sclerosis	268 cases	181 cases	2q31.1	LRP2	rs12988804-T	NR	3E-8		2.18	[1.91-2.45]	Illumina [1033813] (imputed)	N
1883	chr2	170133085	170133086	rs830998	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	2q31.1	LRP2	rs830998-?	0.19	9E-6				Illumina [~ 598000]	N
1883	chr2	170155246	170155247	rs9287914	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q31.1	LRP2	rs9287914-A	0.31	8E-13		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1883	chr2	170156989	170156990	rs4667600	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2q31.1	NR	rs4667600-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
1883	chr2	170174256	170174257	rs75290491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs75290491-T	NR	2E-12		0.0888	[0.064-0.113] unit increase	Affymetrix [9000000] (imputed)	N
1883	chr2	170174256	170174257	rs75290491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs75290491-T	NR	1E-13		0.0938	[0.069-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
1883	chr2	170187104	170187105	rs3845731	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q31.1	NR	rs3845731-A	0.21	5E-14		0.0168	[0.012-0.021] unit increase	NR [NR]	N
1883	chr2	170194458	170194459	rs57989581	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2q31.1	LRP2	rs57989581-C	NR	6E-10		1.98	[1.36-2.6] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1883	chr2	170194458	170194459	rs57989581	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2q31.1	LRP2	rs57989581-C	0.98	4E-6	(EA)	0.3084	[-0.99892-1.61572] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1883	chr2	170199291	170199292	rs60641214	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q31.1	LRP2	rs60641214-A	0.758	6E-8		0.368	[0.12-0.61] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	2q31.1		rs16856823-T	0.196337	8E-12		0.0303983	[0.022-0.039] unit increase	Illumina [13475706] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q31.1		rs16856823-T	0.196124	3E-27		0.0390913	[0.032-0.046] unit decrease	Illumina [13478778] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	2q31.1	LRP2	rs16856823-A	0.808	7E-14	(Japanese)	0.039	[0.029-0.049] unit decrease	Illumina [5864938] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	2q31.1	LRP2	rs16856823-?	NR	1E-13		0.04066	[0.03-0.051] unit increase novel	Illumina [6108953] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q31.1	LRP2	rs16856823-?	NR	5E-22		0.04692	[0.037-0.056] unit increase novel	Illumina [6108953] (imputed)	N
1883	chr2	170200451	170200452	rs16856823	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2q31.1	LRP2	rs16856823-?	NR	3E-25		0.04923	[0.04-0.059] unit decrease novel	Illumina [6108953] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	2q31.1		rs3770636-G	0.2	3E-24		0.0743	increase	NR [7104359] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q31.1		rs3770636-G	NR	2E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs3770636-G	NR	2E-20		0.0902	[0.071-0.109] unit increase	Affymetrix [9000000] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q31.1	NR	rs3770636-G	NR	6E-10		0.0602	[0.041-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs3770636-G	NR	5E-22		0.094	[0.075-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q31.1	LRP2	rs3770636-G	0.1129	3E-22		9.719	NR z score increase	Illumina [26237160] (imputed)	N
1883	chr2	170202832	170202833	rs3770636	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q31.1	LRP2	rs3770636-?	NR	9E-24				Affymetrix, Illumina [at least 5248638] (imputed)	N
1883	chr2	170203103	170203104	rs3770637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q31.1		rs3770637-C	NR	5E-40		0.0443	[0.038-0.051] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1883	chr2	170204099	170204099	rs200309784	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Serum creatinine levels	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	2q31.1	LRP2	rs200309784-GA	0.206	5E-7		0.007	[0.0033-0.0107] unit decrease	Illumina [6288024] (imputed)	N
1883	chr2	170204099	170204099	rs200309784	29779033	Hishida A	2018-05-18	Am J Nephrol	Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.	Estimated glomerular filtration rate	11,283 Japanese ancestry individuals	148,829 Japanese ancestry individuals	2q31.1	LRP2	rs200309784-GA	0.206	5E-7		0.0077	[0.0038-0.0116] unit increase	Illumina [6288024] (imputed)	N
1883	chr2	170204845	170204846	rs2544390	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	2q31.1	LRP2	rs2544390-C	0.49	4E-8		0.082	[0.053-0.111] unit decrease	Illumina [561583]	N
1883	chr2	170205122	170205123	rs2390793	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q31.1	LRP2	rs2390793-T	0.191	3E-14	(East Asian)	0.058	[0.043-0.073] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1883	chr2	170205122	170205123	rs2390793	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2q31.1	LRP2	rs2390793-T	0.1909	1E-13	(Japanese)	0.0395	[0.029-0.05] unit increase	Illumina [1986983] (imputed)	N
1884	chr2	170272590	170272591	rs76179020	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2q31.1	NR	rs76179020-C	NR	5E-7		4.921	[2.64-9.17]	Illumina [13976150] (imputed)	N
1884	chr2	170288766	170288767	rs140193700	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		2q31.1	IQCJ-SCHIP1	rs140193700-A	0.016	7E-7		1.837	[1.13-2.55] unit decrease	Illumina [640625] (imputed)	N
1884	chr2	170305255	170305256	rs2353181	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder or schizophrenia	3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q31.1	NR	rs2353181-T	0.94	5E-6		1.33	1.17-1.49	NR [at least 8807005] (imputed)	N
1885	chr2	170436156	170436157	rs13432340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.1		rs13432340-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1885	chr2	170493862	170493863	rs8207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q31.1	NR	rs8207-G	0.26667	1E-10		0.013527	[0.0094-0.0176] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1886	chr2	170600407	170600408	rs6726182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs6726182-G	0.59465	4E-11				Affymetrix, Illumina [24588908] (imputed)	N
1886	chr2	170600407	170600408	rs6726182	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q31.1	NR	rs6726182-G	0.583118	4E-12		0.012933	[0.0093-0.0166] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1886	chr2	170600582	170600583	rs6755334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q31.1	KLHL23	rs6755334-T	0.583839	7E-11		0.014935489	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1886	chr2	170610419	170610420	rs4667608	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q31.1		rs4667608-C	NR	2E-6		4.8073907	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1886	chr2	170610419	170610420	rs4667608	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q31.1		rs4667608-C	NR	8E-6		4.4542766	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1886	chr2	170611028	170611029	rs62173322	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q31.1	NR	rs62173322-G	0.13	8E-7		1.1904762	[1.11-1.28]	NR [at least 8482392] (imputed)	N
1886	chr2	170611028	170611029	rs62173322	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q31.1	NR	rs62173322-G	0.13	8E-7		1.1904762	[1.11-1.28]	NR [at least 8482392] (imputed)	N
1886	chr2	170616256	170616257	rs12614923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q31.1	KLHL23	rs12614923-G	0.376168	3E-9		0.013959075	[0.0094-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1886	chr2	170618195	170618196	rs77913930	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.1	NR	rs77913930-A	NR	2E-9		0.0242	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr2	170624220	170624221	rs2114646	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	KLHL23	rs2114646-G	0.494	6E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
1886	chr2	170639069	170639070	rs4668163	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	2q31.1	SSB, PHOSPHO2, KLHL23	rs4668163-T	NR	5E-6		0.01439	[NR] unit increase	Illumina [1124301]	N
1886	chr2	170639988	170639989	rs4668164	31263163	Liu CT	2019-07-01	Sci Rep	Genome-wide Association Study of Change in Fasting Glucose over time in 13,807 non-diabetic European Ancestry Individuals.	Fasting glucose change (long-term)	3,669 European ancestry individuals	NA	2q31.1	SSB	rs4668164-A	0.931	4E-6		0.21	[0.12-0.3] unit decrease	Affymetrix, Illumina [~ 25000000] (imputed)	N
1886	chr2	170646915	170646916	rs1974990	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Glomerular filtration rate in diabetes	13,158 European ancestry individuals	9,333 European ancestry individuals, 7,405 Asian individuals, 975 Chinese ancestry individuals, 384 Indian ancestry individuals, 307 Malay ancestry individuals	2q31.1	SSB	rs1974990-G	0.08	1E-6		3.17	[1.88-4.45]	Affymetrix, Illumina [up to 9343778] (imputed)	N
1887	chr2	170676226	170676227	rs1541776	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q31.1	METTL5	rs1541776-?		7E-6				Illumina [4322238] (imputed)	N
1887	chr2	170776520	170776521	rs13012722	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	2q31.1	UBR3	rs13012722-?	0.49	2E-7		0.45	[0.27-0.63] unit decrease	Illumina [6112217] (imputed)	N
1888	chr2	170823173	170823174	rs149447163	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	2q31.1	UBR3	rs149447163-G	0.98	6E-7	(BDRABS, AA)	0.191	[0.12-0.27] unit increase	Illumina [NR] (imputed)	N
1888	chr2	170827759	170827760	rs9752315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q31.1		rs9752315-A	NR	4E-9		0.0265	[0.018-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1889	chr2	170937605	170937606	rs13395018	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Pulse pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2q31.1	NR	rs13395018-A	0.086131580275039	3E-6	(EA)	0.6811176	[0.40-0.97] mmHg increase	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
1889	chr2	170955323	170955324	rs73021321	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q31.1		rs73021321-A	NR	8E-6		4.464002	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1889	chr2	170990252	170990253	rs185528286	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	2q31.1	NR	rs185528286-C	0.0153	4E-6		159.0	[91-226] unit increase	NR [9714326] (imputed)	N
1890	chr2	171084319	171084320	rs74672375	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q31.1		rs74672375-G	0.0064983	6E-7		0.21147	[0.13-0.29] unit increase	Affymetrix [15580782] (imputed)	N
1890	chr2	171096765	171096766	rs1424658	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	ZNF650	rs1424658-?	NR	6E-6	(TAG 46:2)	0.39511192	[0.22-0.57] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1890	chr2	171102568	171102569	rs188138550	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q31.1		rs188138550-T	0.0042124	3E-6		0.24136	[0.14-0.34] unit increase	Affymetrix [15580782] (imputed)	N
1891	chr2	171183776	171183777	rs573982927	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (> 10 hours)	90,515 individuals	NA	2q31.1	MYO3B	rs573982927-T	NR	4E-8		3.46	[3.02-3.9] unit increase	NR [11024754] (imputed)	N
1891	chr2	171187613	171187614	rs10169392	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	2q31.1		rs10169392-G	NR	5E-6		14.472	[8.38-20.56] unit decrease	Illumina [NR] (imputed)	N
1891	chr2	171190116	171190117	rs16858164	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	2q31.1	UBR3, MYO3B, SP5	rs16858164-G	0.03	2E-6		0.253	[0.15-0.36] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
1891	chr2	171190425	171190426	rs11674363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q31.1	Intergenic	rs11674363-T	0.4007	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1891	chr2	171190783	171190784	rs36006524	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.1	Intergenic	rs36006524-T	0.4553	1E-13	(MTAG)	0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1891	chr2	171190783	171190784	rs36006524	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q31.1	Intergenic	rs36006524-C	0.5447	7E-12		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1891	chr2	171190783	171190784	rs36006524	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs36006524-T	0.455	3E-13	(MTAG)	0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1891	chr2	171207867	171207868	rs17497213	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q31.1	AC012594.1, MYO3B	rs17497213-T	0.849	7E-6		0.046	[0.026-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1891	chr2	171233648	171233649	rs114758110	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q31.1	NR	rs114758110-?	NR	5E-11				Illumina [7760689] (imputed)	N
1891	chr2	171256596	171256597	rs7561268	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	MYO3B	rs7561268-C	0.297	2E-6	(Amylin )	0.03	[NR] pM increase	Illumina [899892]	N
1891	chr2	171272375	171272376	rs114428457	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs114428457-G	0.03484	2E-8	(CYP3A5)	0.06857	NR unit increase	Illumina [1671387] (imputed)	N
1892	chr2	171318893	171318894	rs2118674	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitoleic acid (16:1n-7) levels	8,961 European ancestry individuals		2q31.1	MY03B	rs2118674-A	NR	4E-7		0.0498	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1892	chr2	171332287	171332288	rs13035033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q31.1	MYO3B	rs13035033-G	NR	5E-8		0.019443	[0.012-0.026] unit decrease	Affymetrix [323858] (imputed)	N
1892	chr2	171332287	171332288	rs13035033	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	SP5	rs13035033-?	NR	6E-7	(anthranilic acid)	0.2286808	[0.14-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1892	chr2	171347257	171347258	rs6433205	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs6433205-?	NR	5E-6	(Hispanic)	0.04711	[0.027-0.067] unit decrease	Illumina [at least 7383741] (imputed)	N
1892	chr2	171349314	171349315	rs12692954	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q31.1	MYO3B	rs12692954-A	NR	2E-9		0.0210067	[0.014-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1892	chr2	171350679	171350680	rs6716011	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2q31.1	NR	rs6716011-T	0.2986	1E-11		0.0134	[0.0095-0.0173] unit increase	NR [~ 27400000] (imputed)	N
1892	chr2	171353841	171353842	rs2083212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2q31.1	MYO3B	rs2083212-A	NR	5E-10		0.0212566	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
1892	chr2	171353841	171353842	rs2083212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2q31.1	MYO3B	rs2083212-A	NR	5E-10		0.0212295	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
1892	chr2	171353841	171353842	rs2083212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q31.1	NR	rs2083212-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1892	chr2	171356273	171356274	rs10185178	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	2q31.1	MYO3B	rs10185178-?	0.006849	3E-6		22.89	[NR]	Affymetrix [559609]	N
1892	chr2	171360642	171360643	rs7562756	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs7562756-T	0.304575	3E-9		0.0198865	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
1892	chr2	171360895	171360896	rs4668267	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs4668267-?	NR	6E-46				Illumina [at least 7383741] (imputed)	N
1892	chr2	171365888	171365889	rs10176755	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q31.1	MYO3B	rs10176755-G	0	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1892	chr2	171397174	171397175	rs35222429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q31.1	NR	rs35222429-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1892	chr2	171398605	171398605	rs781693294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	MYO3B	rs781693294-C	NR	2E-10		0.0184677	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1892	chr2	171398605	171398605	rs781693294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2q31.1	MYO3B	rs781693294-C	NR	2E-8		0.0179364	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1892	chr2	171398605	171398605	rs781693294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	MYO3B	rs781693294-C	NR	2E-10		0.0182887	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1892	chr2	171398605	171398605	rs781693294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2q31.1	MYO3B	rs781693294-C	NR	2E-8		0.0179113	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
1892	chr2	171398605	171398605	rs781693294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q31.1	MYO3B	rs781693294-C	NR	5E-8		0.0179535	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
1892	chr2	171406949	171406950	rs148105376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	2q31.1	MYO3B	rs148105376-G	NR	7E-7		0.154073	[0.093-0.215] unit decrease	Illumina [13519193] (imputed)	N
1892	chr2	171406949	171406950	rs148105376	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2q31.1	MYO3B	rs148105376-G	NR	9E-6		0.12702	[0.071-0.183] unit decrease	Illumina [13520550] (imputed)	N
1892	chr2	171421124	171421125	rs6433219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	MYO3B	rs6433219-A	NR	2E-9		0.0190251	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1892	chr2	171421124	171421125	rs6433219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	MYO3B	rs6433219-A	NR	3E-9		0.0187761	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1892	chr2	171421124	171421125	rs6433219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q31.1		rs6433219-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1892	chr2	171421124	171421125	rs6433219	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q31.1	NR	rs6433219-A	0.28	2E-16		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
1892	chr2	171421124	171421125	rs6433219	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q31.1	NR	rs6433219-A	0.28	5E-8				Affymetrix [2446094] (imputed)	N
1893	chr2	171461131	171461132	rs6749331	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	MYO3B	rs6749331-G	0.121	3E-6	(Total antioxidants )	0.03	[NR] mM increase	Illumina [899892]	N
1893	chr2	171534220	171534221	rs10192049	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs10192049-?	NR	4E-49	(EA)	0.205047	[0.18-0.23] unit increase (23&Me)	Illumina [at least 7383741] (imputed)	N
1893	chr2	171534220	171534221	rs10192049	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs10192049-?	NR	2E-6	(EA)	0.09856	[0.18-0.23] unit increase	Illumina [at least 7383741] (imputed)	N
1893	chr2	171536324	171536325	rs10198822	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	SP5	rs10198822-?	NR	6E-100				Illumina [at least 7383741] (imputed)	N
1893	chr2	171539415	171539416	rs13430227	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs13430227-?	NR	5E-13	(Chinese)	0.1089	[0.079-0.138] unit increase	Illumina [at least 7383741] (imputed)	N
1893	chr2	171540822	171540823	rs2080401	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	2q31.1	SP5	rs2080401-C	0.6	1E-10		0.096	unit decrease	Illumina [671038]	N
1893	chr2	171540822	171540823	rs2080401	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe attachment	4,919 Latin American individuals	NA	2q31.1	SP5	rs2080401-C	0.6	9E-12		0.071	unit decrease	Illumina [671038]	N
1893	chr2	171540822	171540823	rs2080401	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	2q31.1	SP5	rs2080401-C	0.6	3E-8				Illumina [671038]	N
1893	chr2	171540822	171540823	rs2080401	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	2q31.1	intergenic	rs2080401-A	0.62	7E-6		0.0723	[0.041-0.104] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1893	chr2	171542572	171542573	rs6756973	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	SP5	rs6756973-?	NR	7E-16	(Hispanic)	0.08817	[0.067-0.11] unit increase	Illumina [at least 7383741] (imputed)	N
1893	chr2	171542572	171542573	rs6756973	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	SP5	rs6756973-?	NR	1E-28				Illumina [at least 7383741] (imputed)	N
1894	chr2	171580515	171580516	rs34508790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q31.1		rs34508790-G	NR	5E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1894	chr2	171602459	171602460	rs66624589	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q31.1	Intergenic	rs66624589-T	0.3399	2E-15		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1894	chr2	171605494	171605495	rs6433243	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q31.1	NR	rs6433243-T	0.3517	5E-10		0.016183173	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1894	chr2	171605494	171605495	rs6433243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q31.1		rs6433243-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1894	chr2	171624414	171624415	rs13009323	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q31.1	LOC101926913	rs13009323-A	0.66957	4E-8		0.0117943	[0.0075-0.0161] unit increase	NR [16516521] (imputed)	N
1894	chr2	171629062	171629063	rs12472667	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q31.1	ERICH2	rs12472667-C	0.630541	2E-11		0.0138097	[0.0098-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
1894	chr2	171629062	171629063	rs12472667	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q31.1	intergenic	rs12472667-?	NR	5E-8		0.0148	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1894	chr2	171629062	171629063	rs12472667	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2q31.1	ERICH2	rs12472667-G	0.371305	3E-8		0.0374895	[0.024-0.051] unit increase	Affymetrix [9463307] (imputed)	N
1894	chr2	171631257	171631258	rs4668314	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q31.1		rs4668314-G	0.39	2E-11		0.013	mmol/L increase	NR [NR] (imputed)	N
1894	chr2	171631257	171631258	rs4668314	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	2q31.1		rs4668314-G	0.39	7E-7		0.009	nmol/L decrease	NR [NR] (imputed)	N
1894	chr2	171631257	171631258	rs4668314	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q31.1		rs4668314-G	0.39	3E-8				NR [NR] (imputed)	N
1894	chr2	171631257	171631258	rs4668314	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2q31.1		rs4668314-G	0.39	9E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
1894	chr2	171631257	171631258	rs4668314	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q31.1		rs4668314-G	0.39	4E-10		0.01	% increase	NR [NR] (imputed)	N
1894	chr2	171639973	171639974	rs114454137	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q31.1	intergenic	rs114454137-T	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1894	chr2	171639973	171639974	rs114454137	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q31.1	intergenic	rs114454137-T	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1894	chr2	171654271	171654272	rs148411008	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q31.1	LOC285141	rs148411008-T	0.991	3E-6	(AA)	0.243	NR unit increase	Illumina [NR] (imputed)	N
1894	chr2	171659018	171659018	rs3049863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q31.1		rs3049863-TGA	NR	2E-8		0.0383	[0.025-0.052] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1894	chr2	171665324	171665325	rs7557793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.1	Intergenic	rs7557793-T	0.7654	5E-18	(MTAG)	0.0183	[0.014-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1894	chr2	171665324	171665325	rs7557793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs7557793-T	0.7659	2E-11	(MTAG)	0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1894	chr2	171665324	171665325	rs7557793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q31.1	Intergenic	rs7557793-T	0.7764	3E-12	(MTAG)	0.0192	[0.014-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1894	chr2	171671165	171671166	rs872123	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q31.1	NR	rs872123-C	0.2167	2E-9		0.04586779	[0.031-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1894	chr2	171671165	171671166	rs872123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q31.1	Intergenic	rs872123-T	0.7762	1E-9		0.0208	[0.014-0.027] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1894	chr2	171671165	171671166	rs872123	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q31.1	NR	rs872123-?	NR	2E-6		4.77	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1894	chr2	171671489	171671490	rs45593035	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q31.1	Intergenic	rs45593035-A	0.99	3E-6	(AA)	0.242	NR unit increase	Illumina [NR] (imputed)	N
1894	chr2	171673474	171673475	rs3749034	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q31.1	NR	rs3749034-A	NR	7E-9		5.797	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1894	chr2	171681439	171681439	rs111270317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q31.1		rs111270317-CGTGT	NR	5E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1894	chr2	171681439	171681439	rs111270317	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q31.1	NR	rs111270317-CGTGT	0.33969400000000005	4E-8		0.0068033	[0.0042-0.0094] unit increase	Affymetrix [16585854] (imputed)	N
1894	chr2	171681439	171681439	rs111270317	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q31.1	NR	rs111270317-CGTGT	0.33969400000000005	2E-10		0.00909297	[0.0061-0.0121] unit increase	Affymetrix [16585866] (imputed)	N
1895	chr2	171733224	171733225	rs4668338	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.1	NR	rs4668338-?	NR	4E-20				Affymetrix [NR]	N
1895	chr2	171733224	171733225	rs4668338	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	2q31.1	NR	rs4668338-?	NR	3E-6		4.29	[NR] mg/dl decrease in uric acid levels	Affymetrix [361034]	N
1895	chr2	171814749	171814750	rs4668354	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2q31.1		rs4668354-?	NR	9E-15				NR [~ 8900000] (imputed)	N
1895	chr2	171820480	171820480	rs397731313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q31.1		rs397731313-TA	NR	2E-10		0.0166	[0.012-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1895	chr2	171822465	171822466	rs4668356	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	2q31.1	GORASP2	rs4668356-?	0.06041	1E-6	(PAL8)			Illumina [475971]	N
1896	chr2	171836537	171836538	rs13000644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs13000644-G	0.231156	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1896	chr2	171836894	171836895	rs12151587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q31.1		rs12151587-C	NR	3E-28		0.017	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1896	chr2	171836894	171836895	rs12151587	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.1	intergenic	rs12151587-T	0.5811	6E-24		0.0192	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1896	chr2	171837164	171837166	rs137885341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q31.1		rs137885341-T	0.297736	2E-11		0.016623994	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1896	chr2	171837236	171837237	rs4544401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q31.1	NR	rs4544401-T	NR	1E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1896	chr2	171862954	171862958	rs148912074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q31.1	TLK1	rs148912074-T	0.076264	5E-19		0.037622146	[0.029-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1896	chr2	171867151	171867152	rs13006699	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q31.1	TLK1	rs13006699-A	0.732317	4E-14		0.00192496	[0.0014-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
1896	chr2	171878188	171878189	rs55996750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs55996750-?	NR	3E-30				NR [~ 8900000] (imputed)	N
1896	chr2	171890305	171890306	rs12618898	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.1	Intergenic	rs12618898-A	0.3379	4E-10	(MTAG)	0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1896	chr2	171892378	171892379	rs2723242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q31.1	NR	rs2723242-A	0.757887	4E-15		0.017624	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1896	chr2	171892378	171892379	rs2723242	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q31.1	TLK1	rs2723242-G	0.2401	7E-10		0.02591091	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1896	chr2	171893116	171893117	rs754058	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q31.1	Intergenic	rs754058-T	0.3552	6E-10		0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1896	chr2	171893688	171893689	rs35900609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs35900609-C	0.765137	2E-13				Affymetrix, Illumina [17210439] (imputed)	N
1896	chr2	171904515	171904516	rs12614580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q31.1		rs12614580-C	NR	3E-14		0.0184	[0.014-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1896	chr2	171916119	171916120	rs1991370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q31.1	NR	rs1991370-G	0.284153	2E-10		0.012874	[0.0089-0.0168] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1896	chr2	171930817	171930818	rs16823191	34069769	Al-Sarraj Y	2021-05-18	Genes (Basel)	Family-Based Genome-Wide Association Study of Autism Spectrum Disorder in Middle Eastern Families.	Autism spectrum disorder	487 Middle Eastern ancestry individuals from 171 families	NA	2q31.1	TLK1, GORASP2	rs16823191-G	0.06	4E-6		1.22	[1.09-1.36]	Illumina [516320]	N
1896	chr2	171941017	171941018	rs930036	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	2q31.1	TLK1, GAD1	rs930036-A	0.38	3E-19		0.19	[0.15-0.23] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1896	chr2	171962146	171962147	rs62169009	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	2q31.1	TLK1	rs62169009-G	NR	8E-6		0.02685	[0.015-0.039] unit increase	Illumina [NR] (imputed)	N
1897	chr2	171990970	171990971	rs10183486	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	2q31.1	TLK1	rs10183486-T	0.366	2E-14		0.196	[0.15-0.25] years decrease	Affymetrix, Illumina [2551160] (imputed)	N
1897	chr2	172039546	172039547	rs6433282	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q31.1	NR	rs6433282-T	0.613304	1E-10		0.0132194	[0.0092-0.0172] unit decrease	NR [NR]	N
1898	chr2	172127919	172127920	rs4667682	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q31.1	METTL8	rs4667682-T	0.174	3E-6		0.018	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1898	chr2	172127919	172127920	rs4667682	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	2q31.1	METTL8	rs4667682-C	0.82	5E-6	(White matter hyperintensities)			Illumina [2131250] (imputed)	N
1898	chr2	172153700	172153701	rs1978374	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q31.1	NR	rs1978374-C	0.608213	2E-8		0.0558881	[0.036-0.075] unit decrease	Affymetrix [21375087] (imputed)	N
1898	chr2	172153774	172153775	rs12995219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q31.1	METTL8	rs12995219-A	NR	4E-10		0.022293	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
1898	chr2	172155375	172155376	rs13002867	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs13002867-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1898	chr2	172157842	172157843	rs2032693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	METTL8	rs2032693-G	NR	8E-13		0.0204344	[0.015-0.026] unit increase	Affymetrix [321016] (imputed)	N
1898	chr2	172159305	172159306	rs6709008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	METTL8	rs6709008-A	NR	2E-8		0.0164992	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1898	chr2	172163970	172163971	rs1019362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	METTL8	rs1019362-C	NR	3E-9		0.0178244	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1898	chr2	172174262	172174263	rs2111459	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.1	METTL8	rs2111459-T	0.2425	2E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix [18391927] (imputed)	N
1899	chr2	172244052	172244053	rs13407631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	METTL8	rs13407631-A	NR	5E-11		0.0202583	[0.014-0.026] unit increase	Affymetrix [321016] (imputed)	N
1899	chr2	172253632	172253633	rs72880595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	METTL8	rs72880595-T	NR	4E-8		0.0216947	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1899	chr2	172349261	172349262	rs62183540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q31.1		rs62183540-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1899	chr2	172352734	172352735	rs2058927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	AC007969.4	rs2058927-T	NR	4E-11		0.0188098	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172359894	172359895	rs66529480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q31.1	AC007969.4	rs66529480-A	NR	7E-9		0.0210248	[0.014-0.028] unit decrease	Affymetrix [321788] (imputed)	N
1900	chr2	172365352	172365353	rs10185917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs10185917-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1900	chr2	172369880	172369881	rs11680449	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q31.1	NR	rs11680449-A	0.2823	4E-9	(EA)	0.0404	[0.027-0.054] unit decrease	Illumina [~ 11800000] (imputed)	N
1900	chr2	172374643	172374644	rs2058928	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	AC007969.5	rs2058928-T	NR	2E-8		0.0181507	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
1900	chr2	172375785	172375786	rs72884306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	AC007969.5	rs72884306-T	NR	9E-12		0.0244528	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172375785	172375786	rs72884306	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	AC007969.5	rs72884306-T	NR	1E-11		0.0242551	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172375785	172375786	rs72884306	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q31.1	NR	rs72884306-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1900	chr2	172377211	172377212	rs7585974	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q31.1	NR	rs7585974-C	0.1826	2E-13		0.0187	[0.014-0.024] unit increase	NR [~ 27400000] (imputed)	N
1900	chr2	172377211	172377212	rs7585974	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q31.1	NR	rs7585974-C	0.1826	4E-7		0.0128	[0.0079-0.0177] unit increase	NR [~ 27400000] (imputed)	N
1900	chr2	172380243	172380243	rs570766464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs570766464-T	NR	2E-9		0.0169746	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172380243	172380243	rs570766464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs570766464-T	NR	2E-9		0.016947	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172381486	172381487	rs151054210	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q31.1	CYBRD1	rs151054210-A	0.1801	4E-13		0.1625	[0.12-0.21] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1900	chr2	172398556	172398557	rs56412116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs56412116-G	NR	4E-16		0.0285824	[0.022-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172399049	172399050	rs10171386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs10171386-A	NR	2E-11		0.0190861	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
1900	chr2	172401049	172401050	rs968379	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q31.1	NR	rs968379-T	0.226468	6E-9		0.0653425	[0.043-0.088] unit decrease	Affymetrix [21375087] (imputed)	N
1900	chr2	172409029	172409030	rs55877758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q31.1		rs55877758-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1900	chr2	172410185	172410186	rs17288588	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q31.1	CYBRD1	rs17288588-A	0.757185	2E-11		0.0143209	[0.01-0.019] unit decrease	NR [13737936] (imputed)	N
1900	chr2	172410185	172410186	rs17288588	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.1		rs17288588-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1900	chr2	172410448	172410449	rs113749774	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CYBRD1	rs113749774-?	NR	4E-8	(female)	0.384033	[NR] unit increase	Affymetrix [NR] (imputed)	N
1900	chr2	172412007	172412008	rs1047255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.1		rs1047255-G	NR	9E-10		0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1900	chr2	172415018	172415019	rs191516412	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q31.1	NR	rs191516412-A	0.247019	5E-16		0.0606081	[0.045-0.076] unit decrease	Affymetrix [17914406] (imputed)	N
1900	chr2	172416533	172416533	rs543738925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q31.1		rs543738925-CTTT	NR	1E-16		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1900	chr2	172416802	172416803	rs56372408	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q31.1	NR	rs56372408-G	0.243248	8E-13		0.0799485	[0.058-0.102] unit decrease	Affymetrix [21375087] (imputed)	N
1900	chr2	172416802	172416803	rs56372408	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q31.1	CYBRD1	rs56372408-G	0.237332	3E-12		0.01808	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1900	chr2	172416802	172416803	rs56372408	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q31.1	CYBRD1	rs56372408-G	0.237332	1E-9	(males)	0.02118	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1900	chr2	172416809	172416810	rs56228832	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q31.1	NR	rs56228832-?	NR	8E-17	(male)	0.33802	[0.26-0.42] unit decrease	Affymetrix [7794483] (imputed)	N
1900	chr2	172416809	172416810	rs56228832	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q31.1	NR	rs56228832-?	NR	3E-8	(female)	0.15632	[0.1-0.21] unit decrease	Affymetrix [7794483] (imputed)	N
1900	chr2	172416809	172416810	rs56228832	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q31.1	NR	rs56228832-?	NR	2E-23		0.25637	[0.21-0.31] unit decrease	Affymetrix [7794483] (imputed)	N
1900	chr2	172416868	172416869	rs55852614	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.1	CYBRD1	rs55852614-T	0.7526	3E-73		0.0393	[0.035-0.044] unit increase	Affymetrix [18391927] (imputed)	N
1900	chr2	172416991	172416992	rs2542932	34022066	Kim KW	2021-05-22	Allergy	Genome-wide association study identifies TNFSF15associated with childhood asthma.	Asthma (childhood onset)	741 Korean ancestry cases, 1,140 Korean ancestry controls	NA	2q31.1	CYBRD1	rs2542932-?	NR	2E-8		0.517	[0.41-0.65]	Affymetrix, Illumina [4559629] (imputed)	N
1900	chr2	172417073	172417074	rs55638996	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs55638996-A	NR	1E-18		0.0284673	[0.022-0.035] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172421099	172421100	rs2542944	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q31.1		rs2542944-G	NR	5E-7		1.0559661	[1.03-1.08]	Affymetrix [7846216] (imputed)	N
1900	chr2	172421945	172421946	rs59895307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs59895307-G	NR	8E-9		0.0167761	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172424793	172424794	rs11675683	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q31.1		rs11675683-A	NR	4E-8		1.0666	NR	Affymetrix [7846216] (imputed)	N
1900	chr2	172428287	172428288	rs2356787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	CYBRD1	rs2356787-A	NR	6E-10		0.0174668	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172430116	172430117	rs10930482	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q31.1	NR	rs10930482-G	0.502964	1E-8		0.0550014	[0.036-0.074] unit increase	Affymetrix [21375087] (imputed)	N
1900	chr2	172433849	172433850	rs56026672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs56026672-T	NR	4E-10		0.0191773	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172433849	172433850	rs56026672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs56026672-T	NR	1E-9		0.0186642	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1900	chr2	172434011	172434012	rs113582773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs113582773-T	NR	9E-19		0.0270775	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172459610	172459611	rs66506686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs66506686-G	NR	3E-12		0.0222877	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1900	chr2	172465331	172465332	rs6723309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs6723309-T	NR	1E-9		0.0174259	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
1900	chr2	172471827	172471828	rs72888032	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RPL21P38	rs72888032-C	NR	4E-8		0.0179521	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
1900	chr2	172472583	172472584	rs10930486	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	DYNC1I2	rs10930486-?	NR	6E-6	(PC 38:5)	0.15324365	[0.087-0.219] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1901	chr2	172521424	172521425	rs62181736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs62181736-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1901	chr2	172521826	172521827	rs7600835	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q31.1	NR	rs7600835-A	0.342	2E-9		0.006944	[0.0047-0.0092] unit decrease	NR [9732723] (imputed)	N
1901	chr2	172521826	172521827	rs7600835	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q31.1	NR	rs7600835-A	0.342	2E-8		0.015121582	[0.0099-0.0204] unit decrease	NR [~ 10000000] (imputed)	N
1901	chr2	172527237	172527238	rs72889848	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q31.1	DYNC1I2	rs72889848-T	0.7543	2E-6		0.0354	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1901	chr2	172533304	172533305	rs11690935	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q31.1	NR	rs11690935-G	NR	6E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1901	chr2	172549629	172549630	rs6757773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q31.1		rs6757773-A	NR	1E-8		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1901	chr2	172563921	172563922	rs312925	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.1	NR	rs312925-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1901	chr2	172564020	172564021	rs312924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q31.1		rs312924-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1901	chr2	172570418	172570419	rs950173	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	2q31.1	DYNC1I2	rs950173-A		9E-7		167.4	[100.56-234.24] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
1901	chr2	172618473	172618474	rs9789538	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	NR	rs9789538-?	NR	3E-7		0.0090409	[0.0056-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1902	chr2	172680677	172680678	rs1400816	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q31.1	SLC25A12	rs1400816-?		1E-6				Illumina [859311]	N
1902	chr2	172701156	172701157	rs2271758	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	2q31.1	NR	rs2271758-G	0.59	1E-9		0.22	[0.14-0.3] unit decrease	Affymetrix [9231066] (imputed)	N
1902	chr2	172701156	172701157	rs2271758	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	2q31.1	NR	rs2271758-G	0.59	1E-9		0.22	[0.14-0.3] unit decrease	Affymetrix [9231066] (imputed)	N
1902	chr2	172731982	172731983	rs59844139	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	NR	rs59844139-?	NR	2E-7		0.0091096	[0.0057-0.0125] unit increase	Affymetrix [805426] (imputed)	N
1903	chr2	172785004	172785005	rs9784123	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q31.1	HAT1	rs9784123-?	NR	3E-8		0.012116563	[0.0078-0.0164] unit decrease	NR [7306098]	N
1903	chr2	172796773	172796774	rs62182438	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q31.1	NR	rs62182438-T	0.2595	1E-8		0.0257	[0.017-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1903	chr2	172812338	172812339	rs2165934	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs2165934-A	0.3264	2E-13	(MTAG)	0.0129	[0.0094-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1903	chr2	172818466	172818467	rs56133507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs56133507-T	0.8083	2E-17	(MTAG)	0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1903	chr2	172833138	172833139	rs13004237	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs13004237-?	NR	1E-8		1.0564348	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1903	chr2	172833138	172833139	rs13004237	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs13004237-G	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1903	chr2	172843277	172843278	rs72890842	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q31.1	NR	rs72890842-T	0.7629	7E-16		0.0673	[0.051-0.084] unit decrease	Illumina [~ 10600000] (imputed)	N
1903	chr2	172851935	172851936	rs17428076	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q31.1	NR	rs17428076-C	0.241551	3E-10		0.051549707	[0.035-0.068] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1903	chr2	172851935	172851936	rs17428076	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q31.1	DYNC1I2, SLC25A12, HAT1, METAP1D	rs17428076-?		2E-39				Affymetrix, Illumina [NR] (imputed)	N
1903	chr2	172851935	172851936	rs17428076	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs17428076-C	0.7598	6E-17		0.0137	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1903	chr2	172851935	172851936	rs17428076	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q31.1	HAT1, METAP1D	rs17428076-C	0.768	3E-16		8.183	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1903	chr2	172851935	172851936	rs17428076	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2q31.1	HAT1, METAP1D	rs17428076-?	NR	3E-15		1.0695187	[1.05-1.09]	Illumina [13762925] (imputed)	N
1903	chr2	172866358	172866359	rs7598246	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q31.1		rs7598246-?	NR	5E-8				NR [7857346] (imputed)	N
1903	chr2	172866358	172866359	rs7598246	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	METAP1D	rs7598246-?	NR	4E-8		0.0096707	[0.0062-0.0131] unit increase	Affymetrix [805426] (imputed)	N
1903	chr2	172880074	172880075	rs62183808	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q31.1	NR	rs62183808-A		1E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1904	chr2	172890587	172890588	rs10930502	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q31.1	NR	rs10930502-?	NR	2E-9		0.13784	[0.093-0.183] unit decrease	Affymetrix [7794483] (imputed)	N
1904	chr2	172890587	172890588	rs10930502	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q31.1	NA	rs10930502-A	0.694	3E-13		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1904	chr2	172890587	172890588	rs10930502	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q31.1	NA	rs10930502-A	0.694	3E-13		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1904	chr2	172890587	172890588	rs10930502	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	2q31.1	METAP1D	rs10930502-A	0.6794	1E-7		0.0048	[0.003-0.0066] unit increase	Illumina [at least 200000]	N
1904	chr2	172901184	172901185	rs148913951	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q31.1	NR	rs148913951-?	NR	1E-9		0.146604	[0.099-0.194] unit decrease	NR [13958389] (imputed)	N
1904	chr2	172907752	172907753	rs60231166	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	2q31.1	NR	rs60231166-C	0.743421	2E-7		0.121	[0.076-0.166] unit increase	NR [9260588] (imputed)	N
1904	chr2	172911093	172911094	rs34636594	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q31.1	Intergenic	rs34636594-A	0.7213	5E-11		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1904	chr2	172921831	172921832	rs788171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q31.1		rs788171-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1904	chr2	172931558	172931559	rs788163	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q31.1	METAP1D	rs788163-A	0.724364	6E-11		0.0100556	[0.007-0.0131] unit decrease	Affymetrix [12370749]	N
1904	chr2	172931558	172931559	rs788163	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.1	NR	rs788163-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1904	chr2	172972357	172972358	rs1001780	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q31.1	NR	rs1001780-G	NR	8E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1904	chr2	172972970	172972971	rs2016394	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q31.1		rs2016394-A	NR	3E-12		0.96	[0.95-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1904	chr2	172972970	172972971	rs2016394	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q31.1	DLX2-AS1	rs2016394-G	0.53	6E-12	(EA)	1.0526316	[1.03-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1904	chr2	172972970	172972971	rs2016394	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	2q31.1	NR	rs2016394-G	0.52	2E-6		1.0526316	[1.03-1.06]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1904	chr2	172972970	172972971	rs2016394	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2q31.1	NR	rs2016394-G	0.52	8E-6		1.0526316	[1.03-1.06]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1904	chr2	172972970	172972971	rs2016394	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q31.1	METAP1D, DLX1, DLX2	rs2016394-G	0.52	1E-8		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1904	chr2	172973899	172973900	rs13018407	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	2q31.1	NR	rs13018407-T	0.342545	3E-8		5.53	z score decrease	NR [10847151] (imputed)	N
1904	chr2	172985657	172985658	rs6739007	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2q31.1	Intergenic	rs6739007-G	NR	4E-6	(men)	0.0217887	[0.013-0.031] unit decrease	Illumina [13520550] (imputed)	N
1904	chr2	172992015	172992016	rs12692981	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	2q31.1	NR	rs12692981-T	0.846775	4E-6		1.1350738	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1904	chr2	172992895	172992896	rs7585344	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.1	NR	rs7585344-?	NR	3E-9				Affymetrix [NR]	N
1905	chr2	173026854	173026855	rs115126995	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	2q31.1		rs115126995-?	NR	3E-8		2.0207	[1.31-2.73] unit increase	Affymetrix [NR] (imputed)	N
1905	chr2	173073221	173073222	rs75652721	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs75652721-C	0.0122	5E-9	(WARS)	0.06703	NR unit increase	Illumina [1671387] (imputed)	N
1905	chr2	173095255	173095256	rs138302247	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q31.1	NR	rs138302247-?	NR	3E-6		0.4152	[0.24-0.59] unit increase	Illumina [at least 560000] (imputed)	N
1905	chr2	173123586	173123587	rs4972753	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	ITGA6	rs4972753-?	NR	6E-6	(TAG 54:4)	0.21707018	[0.12-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
1905	chr2	173140873	173140874	rs4972760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q31.1		rs4972760-G	0.877385	5E-9		0.020533606	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1905	chr2	173140873	173140874	rs4972760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q31.1	NR	rs4972760-G	0.875872	2E-11		0.019131	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1906	chr2	173150011	173150012	rs68130068	28649644	Pivot X	2017-02-23	NPJ Breast Cancer	Constitutional variants are not associated with HER2-positive breast cancer: results from the SIGNAL/PHARE clinical cohort.	HER2 status in breast cancer	5,473 European ancestry  HER2-negative cases, 3,230 European ancestry HER2-positive cases	NA	2q31.1	NR	rs68130068-T	0.142	4E-6				Illumina [914144] (imputed)	N
1906	chr2	173153896	173153897	rs10169716	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	2q31.1		rs10169716-C	NR	2E-13		0.1244	[0.091-0.158] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1906	chr2	173229471	173229472	rs10173487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs10173487-T	0.507434	6E-10				Affymetrix, Illumina [24588908] (imputed)	N
1906	chr2	173249152	173249153	rs7581662	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q31.1		rs7581662-G	0.779315	1E-10		0.017449677	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1906	chr2	173249152	173249153	rs7581662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs7581662-A	0.223825	3E-12				Affymetrix, Illumina [17210439] (imputed)	N
1906	chr2	173249152	173249153	rs7581662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q31.1	NR	rs7581662-A	0.221035	1E-14		0.017943	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1906	chr2	173265749	173265750	rs115218289	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	2q31.1	DLX2, ITGA6	rs115218289-?		9E-8				Illumina [7830195] (imputed)	N
1906	chr2	173265749	173265750	rs115218289	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	2q31.1	DLX2, ITGA6	rs115218289-?	NR	2E-8	(excluding GERA cohort)			Illumina [7830195] (imputed)	N
1907	chr2	173278890	173278891	rs16860332	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.1	ITGA6	rs16860332-C	0.872092	2E-8	(62 ms)	0.0457947	[0.029-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1907	chr2	173297870	173297871	rs77282844	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q31.1		rs77282844-G	NR	5E-12				Affymetrix [7846216] (imputed)	N
1907	chr2	173309802	173309803	rs146618443	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2q31.1		rs146618443-G	NR	2E-13		1.2748	NR	Affymetrix [7846216] (imputed)	N
1907	chr2	173311552	173311553	rs12621278	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2q31.1		rs12621278-?	NR	3E-13		0.748161	[0.67-0.83]	NR [680312]	N
1907	chr2	173311552	173311553	rs12621278	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	2q31.1	NR	rs12621278-A	NR	2E-14		1.28	NR	Affymetrix [at least 232408] (imputed)	N
1907	chr2	173311552	173311553	rs12621278	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	2q31.1	ITGA6	rs12621278-A	0.777	3E-8		1.182	NR	Illumina [7742602] (imputed)	N
1907	chr2	173311552	173311553	rs12621278	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q31.1	NR	rs12621278-A	0.94	2E-42		1.27	[1.23-1.32]	Illumina [20370935] (imputed)	N
1907	chr2	173311552	173311553	rs12621278	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	2q31.1	ITGA6	rs12621278-?	0.94	9E-23		1.33	[1.25-1.43]	Illumina [541129]	N
1907	chr2	173318570	173318571	rs13421350	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	2q31.1	ITGA6	rs13421350-?	0.85	3E-6	(American Indian, additive )	1.5873016		Affymetrix [NR]	N
1907	chr2	173319929	173319930	rs77167534	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2q31.1	NR	rs77167534-C	0.938325023	1E-11		1.3034425	[1.21-1.41]	Affymetrix, Illumina [20400945] (imputed)	N
1907	chr2	173319929	173319930	rs77167534	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q31.1	NR	rs77167534-C	NR	1E-55		1.235	[1.20-1.27]	Affymetrix, Illumina [29235255] (imputed)	N
1907	chr2	173319929	173319930	rs77167534	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	2q31.1	NR	rs77167534-C	0.767	1E-10		1.167	[1.11-1.22]	Affymetrix, Illumina [10186136] (imputed)	N
1907	chr2	173321790	173321791	rs116532339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2q31.1		rs116532339-G	0.214479533	2E-10		0.16433817	[0.11-0.21] unit decrease	Illumina [13406905] (imputed)	N
1907	chr2	173321790	173321791	rs116532339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2q31.1		rs116532339-G	NR	8E-21		0.1859	[0.15-0.22] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1907	chr2	173321790	173321791	rs116532339	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	2q31.1		rs116532339-G	0.21558848	5E-12		0.8392913	[0.798567193-0.882092124]	Illumina [8919992] (imputed)	N
1907	chr2	173339807	173339808	rs11895564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q31.1		rs11895564-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1907	chr2	173402899	173402900	rs7584089	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	2q31.1		rs7584089-C	0.809701	5E-73		0.095524	[0.085-0.106] unit increase	NR [11722792] (imputed)	N
1907	chr2	173404803	173404804	rs12052479	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q31.1	PDK1, AC093818.1, ITGA6	rs12052479-A	0.2114026	2E-28	(EA, [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 1, mitochondrial)	0.5718	[0.47-0.67] unit decrease	Affymetrix [509946]	N
1908	chr2	173493077	173493078	rs836589	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	2q31.1	PDK1	rs836589-A	0.186	2E-6				Illumina [840354]	N
1909	chr2	173546312	173546313	rs733331	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	2q31.1	PDK1, RAPGEF4	rs733331-?	NR	7E-11		0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
1909	chr2	173566932	173566933	rs74265101	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q31.1	NR	rs74265101-G	0.043	7E-8		0.0143228	[0.0091-0.0195] unit increase	NR [9732723] (imputed)	N
1909	chr2	173568963	173568964	rs77143891	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q31.1		rs77143891-C	0.958	3E-9		0.016	[0.01-0.022] unit decrease	NR [NR] (imputed)	N
1909	chr2	173576420	173576421	rs751680987	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q31.1	RAPGEF4-AS1	rs751680987-T	0.997	6E-6		0.3581	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1909	chr2	173576420	173576421	rs751680987	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q31.1	RAPGEF4-AS1	rs751680987-T	0.997	3E-6		0.3745	[0.22-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1909	chr2	173591411	173591412	rs56960326	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	2q31.1	RAPGEF4, AS1	rs56960326-G	0.53	8E-8		0.057	[0.035-0.079] unit increase	Affymetrix [774398] (imputed)	N
1909	chr2	173592605	173592606	rs1349498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	2q31.1		rs1349498-T	NR	4E-8		0.013	[0.0083-0.0177] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1909	chr2	173592662	173592663	rs1349497	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	2q31.1	RAPGEF4-AS1	rs1349497-?	NR	7E-9		0.02715	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
1909	chr2	173593725	173593726	rs6731931	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	2q31.1	RAPGEF4-AS1	rs6731931-T	0.4717	5E-6		0.025	[0.015-0.035] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
1909	chr2	173593725	173593726	rs6731931	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	2q31.1	RAPGEF4-AS1	rs6731931-T	0.7955	2E-7		0.012	[0.0073-0.0167] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1909	chr2	173633984	173633985	rs115472750	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2q31.1	NR	rs115472750-?	NR	8E-6		13.012	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1909	chr2	173657380	173657381	rs145449227	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs145449227-T	0.01045	4E-10	(TAGLN)	0.4297	NR unit increase	Illumina [1671387] (imputed)	N
1909	chr2	173657380	173657381	rs145449227	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs145449227-T	0.01045	2E-9	(FHL1)	0.008391	NR unit increase	Illumina [1671387] (imputed)	N
1910	chr2	173675358	173675359	rs3769312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.1	Intergenic	rs3769312-A	0.1871	1E-8	(MTAG)	0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1910	chr2	173675358	173675359	rs3769312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q31.1	Intergenic	rs3769312-C	0.8129	2E-8		0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1910	chr2	173679781	173679782	rs3769309	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q31.1	RAPGEF4	rs3769309-?	NR	2E-9		0.012022352	[0.0081-0.0159] unit increase	NR [7306098]	N
1910	chr2	173682947	173682948	rs12473986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs12473986-T	0.2907	4E-8		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1910	chr2	173682947	173682948	rs12473986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs12473986-T	0.2907	4E-8	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1910	chr2	173701548	173701549	rs150207057	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs150207057-C	0.01045	4E-10	(TAGLN)	0.4297	NR unit increase	Illumina [1671387] (imputed)	N
1910	chr2	173701548	173701549	rs150207057	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs150207057-C	0.01045	2E-9	(FHL1)	0.008391	NR unit increase	Illumina [1671387] (imputed)	N
1910	chr2	173764391	173764392	rs2553014	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q31.1	RAPGEF4	rs2553014-?		3E-6				Illumina [4322238] (imputed)	N
1910	chr2	173789112	173789113	rs80196851	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	2q31.1	RAPGEF4	rs80196851-A		9E-6		460.86	[258.00-663.72] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
1910	chr2	173795966	173795967	rs17758391	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs17758391-A	0.3204	2E-9	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1911	chr2	173822968	173822969	rs12996953	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs12996953-A	0.3123	1E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1911	chr2	173859679	173859680	rs16861137	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	2q31.1	NR	rs16861137-A	0.07	1E-6		1.45	[NR]	Illumina [747089]	N
1911	chr2	173881918	173881919	rs150495482	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GLP-1 levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	2q31.1	RAPGEF4	rs150495482-T	0.001	2E-6		0.559	[0.33-0.79] unit increase	Illumina [at least 81396]	N
1911	chr2	173893337	173893338	rs12615974	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	2q31.1	NR	rs12615974-?	NR	3E-8	(Klebsiella)	0.924708	[0.63-1.22] unit increase	Illumina [5293637] (imputed)	N
1911	chr2	173893337	173893338	rs12615974	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	2q31.1	NR	rs12615974-?	NR	2E-8	(Klebsiella_variicola)	0.930512	[0.63-1.23] unit increase	Illumina [5293637] (imputed)	N
1911	chr2	173923136	173923137	rs6707813	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2q31.1	NR	rs6707813-?	NR	3E-7		0.031952	[0.02-0.044] unit increase	Affymetrix [9658292] (imputed)	N
1911	chr2	173925050	173925051	rs10187560	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q31.1	NR	rs10187560-T	0.302903	9E-10		0.00495786	[0.0032-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
1911	chr2	173925050	173925051	rs10187560	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q31.1	NR	rs10187560-T	0.302903	2E-8		0.00507307	[0.0031-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1911	chr2	173926770	173926771	rs11687520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q31.1		rs11687520-C	NR	3E-12		0.0184	[0.013-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1911	chr2	173926770	173926771	rs11687520	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q31.1	RAPGEF4	rs11687520-T	0.829268	3E-11		0.0169198	[0.012-0.022] unit decrease	Affymetrix [NR] (imputed)	N
1912	chr2	173938223	173938224	rs3754748	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q31.1	NR	rs3754748-A	0.319136	2E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1912	chr2	173948570	173948571	rs72905046	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q31.1	MLTK	rs72905046-G	0.4312	2E-8		0.0114062475	[0.0074-0.0154] unit increase	Affymetrix [up to 18485882] (imputed)	N
1912	chr2	173965055	173965056	rs6758859	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q31.1	MLTK	rs6758859-T	0.6355	2E-11		0.1211	[0.086-0.156] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1912	chr2	173983203	173983204	rs722864	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q31.1	ZAK	rs722864-G	0.805712997	6E-7		1.0751604	[1.05-1.11]	Illumina [10439017] (imputed)	N
1912	chr2	174008622	174008623	rs13017210	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q31.1	MAP3K20	rs13017210-?	0.3859	4E-10		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1912	chr2	174015167	174015168	rs7575189	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q31.1		rs7575189-G	0.412	2E-14		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1912	chr2	174015167	174015168	rs7575189	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q31.1	ZAK	rs7575189-G	0.410722	2E-15		0.0163622	[0.012-0.02] unit decrease	NR [16516521] (imputed)	N
1912	chr2	174015167	174015168	rs7575189	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q31.1	ZAK	rs7575189-A	0.5873	5E-8		0.011123441	[0.0071-0.0151] unit decrease	Affymetrix [11514654] (imputed)	N
1912	chr2	174031354	174031359	rs145341801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q31.1		rs145341801-T	NR	4E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1912	chr2	174031354	174031359	rs145341801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.1	NR	rs145341801-T	NR	3E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1912	chr2	174037346	174037347	rs13004345	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q31.1		rs13004345-T	0.6523	4E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1912	chr2	174037346	174037347	rs13004345	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q31.1	ZAK	rs13004345-C	0.35250000000000004	2E-9		1.0190797		Affymetrix [11880941] (imputed)	N
1912	chr2	174043232	174043233	rs13009008	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q31.1		rs13009008-A	0.328	5E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1912	chr2	174053824	174053825	rs551947583	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	2q31.1	ZAK	rs551947583-T	0.001	9E-10	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
1912	chr2	174059381	174059382	rs13035366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q31.1		rs13035366-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1913	chr2	174067179	174067180	rs6750801	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q31.1	NR	rs6750801-A	0.345	8E-10		0.00698417	[0.0048-0.0092] unit increase	NR [9732723] (imputed)	N
1913	chr2	174075760	174075761	rs1866631	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2q31.1	MLK7-AS1	rs1866631-A	0.5780087819999999	2E-6		1.0744331	[1.04-1.11]	Illumina [10439017] (imputed)	N
1913	chr2	174085740	174085741	rs11690597	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q31.1	MLTK	rs11690597-A	0.792988	2E-9		0.0145105	[0.0097-0.0193] unit decrease	Affymetrix [NR] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.1	Intergenic	rs10193498-A	0.7432	9E-11	(MTAG)	0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs10193498-A	0.7435	3E-16	(MTAG)	0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q31.1	Intergenic	rs10193498-A	0.7435	2E-11		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs10193498-A	0.755	3E-9		0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs10193498-A	0.755	2E-14	(MTAG)	0.0116	[0.0087-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1913	chr2	174094344	174094345	rs10193498	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q31.1	Intergenic	rs10193498-A	0.7595	3E-12	(MTAG)	0.0186	[0.013-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1913	chr2	174107298	174107299	rs4972539	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2q31.1	NR	rs4972539-?	NR	1E-6		0.03089	[0.018-0.043] unit decrease	Affymetrix [9658292] (imputed)	N
1913	chr2	174114138	174114139	rs10497399	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels	737 European ancestry females	NA	2q31.1	ZAK	rs10497399-?		2E-6				Illumina [up to 550000]	N
1913	chr2	174130917	174130918	rs200821510	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	2q31.1		rs200821510-?	NR	4E-8		1.60061	[1.02-2.18] unit decrease	NR [9800000] (imputed)	N
1913	chr2	174134901	174134902	rs4246610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q31.1	MLK7-AS1	rs4246610-A	NR	4E-9		0.0255074	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1913	chr2	174134901	174134902	rs4246610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q31.1	MLK7-AS1	rs4246610-A	NR	4E-9		0.025519	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1913	chr2	174134901	174134902	rs4246610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q31.1	MLK7-AS1	rs4246610-A	NR	2E-8		0.0246505	[0.016-0.033] unit increase	Affymetrix [321114] (imputed)	N
1913	chr2	174134901	174134902	rs4246610	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q31.1	MLK7-AS1	rs4246610-A	NR	2E-8		0.0247977	[0.016-0.033] unit increase	Affymetrix [321169] (imputed)	N
1913	chr2	174151806	174151807	rs182734936	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	2q31.1	MLK7-AS1, CDCA7	rs182734936-T	0.07	7E-6		0.38	unit increase	Illumina [5600000] (imputed)	N
1913	chr2	174156552	174156553	rs1093978	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs1093978-A	0.5615	2E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr2	174163803	174163804	rs1838023	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	2q31.1	intergenic	rs1838023-T	0.16	7E-6	(male)	0.121	[0.068-0.174] unit decrease	Illumina [6380737] (imputed)	N
1913	chr2	174175920	174175921	rs711793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q31.1		rs711793-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1913	chr2	174175920	174175921	rs711793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs711793-T	0.3474	5E-12		0.0103	[0.0074-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1913	chr2	174187006	174187007	rs35771468	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q31.1	Intergenic	rs35771468-T	0.8233	9E-9		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1914	chr2	174196968	174196969	rs820312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.1	Intergenic	rs820312-C	0.491	2E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1914	chr2	174196968	174196969	rs820312	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs820312-C	0.4848	1E-9	(MTAG)	0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1914	chr2	174205585	174205589	rs200725404	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q31.1	NR	rs200725404-A	0.8437	4E-10	(EA)	0.055	[0.038-0.072] unit increase	Illumina [~ 11800000] (imputed)	N
1914	chr2	174209821	174209822	rs10204104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q31.1	AC092573.2	rs10204104-A	0.831892	6E-11		0.019677494	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1914	chr2	174210226	174210227	rs115882368	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2q31.1	MLK7-AS1, CDCA7	rs115882368-T	0.980789294	2E-6		1.3762412	[1.21-1.57]	Illumina [10439017] (imputed)	N
1914	chr2	174212893	174212894	rs1550623	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q31.1		rs1550623-A	NR	6E-10		1.05	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1914	chr2	174212893	174212894	rs1550623	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q31.1	CDCA7	rs1550623-A	0.85	5E-10	(EA)	1.0526316	[1.02-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1914	chr2	174212893	174212894	rs1550623	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2q31.1	NR	rs1550623-A	0.84	1E-6		1.0526316	[1.03-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1914	chr2	174212893	174212894	rs1550623	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q31.1	CDCA7	rs1550623-A	0.84	3E-8		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1914	chr2	174219117	174219118	rs930313	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q31.1		rs930313-G	NR	1E-7		1.0706638	[1.04-1.1]	Affymetrix [7846216] (imputed)	N
1914	chr2	174219134	174219135	rs920112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q31.1		rs920112-A	NR	3E-20		0.0282	[0.022-0.034] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1914	chr2	174219134	174219135	rs920112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2q31.1		rs920112-A	0.479106	4E-8		0.0205256	[0.013-0.028] unit increase	Illumina [13476266] (imputed)	N
1914	chr2	174219134	174219135	rs920112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q31.1		rs920112-A	NR	5E-17		0.0258	[0.02-0.032] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1914	chr2	174219134	174219135	rs920112	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2q31.1		rs920112-A	0.478699	1E-8		0.0215853	[0.014-0.029] unit increase	Illumina [13476299] (imputed)	N
1914	chr2	174219134	174219135	rs920112	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q31.1		rs920112-G	0.947	5E-16		0.2	[-0.25--0.15] % decrease	Affymetrix [NR] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q31.1	AC092573.2	rs920112-A	0.053723	4E-12		0.03393916	[0.024-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q31.1	AC092573.2	rs920112-A	0.053812	4E-39		0.064890176	[0.055-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q31.1	AC092573.2	rs920112-A	0.05384	9E-40		0.06545137	[0.056-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q31.1	AC092573.2	rs920112-A	0.053755	6E-30		0.0505503	[0.042-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q31.1	AC092573.2	rs920112-A	0.053754	2E-21		0.046312317	[0.037-0.056] unit increase	Affymetrix [93095623] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q31.1	NR	rs920112-G	0.946103	1E-11		0.028407	[0.02-0.037] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs920112-A	0.12525	3E-30				Affymetrix, Illumina [24246363] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q31.1	NR	rs920112-A	0.054014	3E-29		0.045285	[0.037-0.053] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs920112-A	0.131004	2E-21				Affymetrix, Illumina [20825802] (imputed)	N
1914	chr2	174219134	174219135	rs920112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q31.1	NR	rs920112-A	0.053746	5E-21		0.040315	[0.032-0.049] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1914	chr2	174219134	174219135	rs920112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q31.1		rs920112-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1914	chr2	174219134	174219135	rs920112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q31.1		rs920112-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1914	chr2	174219134	174219135	rs920112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q31.1		rs920112-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1914	chr2	174219134	174219135	rs920112	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q31.1	AC092573.2	rs920112-A	0.0535	9E-12		0.05335721	[0.038-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
1914	chr2	174219134	174219135	rs920112	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q31.1	AC092573.2	rs920112-A	0.0535	5E-9		0.04577967	[0.03-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1914	chr2	174234546	174234547	rs34925593	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q31.1	NR	rs34925593-C	NR	2E-14		1.054	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1914	chr2	174234546	174234547	rs34925593	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q31.1	CDCA7	rs34925593-C	0.48	3E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1914	chr2	174237274	174237275	rs1560835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.1		rs1560835-C	NR	9E-11		0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1914	chr2	174238698	174238699	rs72899227	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q31.1	CDCA7, SP3	rs72899227-A	0.844833286	6E-6		1.0766385	[1.04-1.11]	Illumina [10439017] (imputed)	N
1914	chr2	174250867	174250868	rs6761859	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	2q31.1	CDCA7	rs6761859-?		4E-6	(EA)	0.634	[0.36-0.9] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1914	chr2	174253293	174253294	rs4972559	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q31.1		rs4972559-G	0.306	4E-10		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1914	chr2	174259438	174259439	rs11689493	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q31.1	NR	rs11689493-T	NR	2E-6	(GEE model)	0.4526	[0.27-0.64] unit decrease	NR [NR] (imputed)	N
1914	chr2	174277356	174277357	rs74527054	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs74527054-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1914	chr2	174277356	174277357	rs74527054	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs74527054-T	0.133488	3E-40		0.0597552	[0.051-0.069] unit increase	NR [19129689] (imputed)	N
1914	chr2	174277356	174277357	rs74527054	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs74527054-T	NR	3E-10		0.0567853	NR unit increase	NR [NR] (imputed)	N
1914	chr2	174297658	174297659	rs10497394	23974705	Allen EK	2013-08-23	J Assoc Res Otolaryngol	A genome-wide association study of chronic otitis media with effusion and recurrent otitis media identifies a novel susceptibility locus on chromosome 2.	Otitis media (chronic/recurrent)	373 cases and 229 controls from 143 families	932 European ancestry cases and 652 European ancestry controls from 441 families	2q31.1	CDCA7, SP3	rs10497394-G	0.637	2E-8		1.51	[1.30-1.70]	Illumina [324748]	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	7E-6	(SBP, during intervention)	3.72	[2.09-5.35] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	5E-7	(DBP, during intervention)	3.11	[1.89-4.33] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (low sodium intervention)	1,850 Han Chinese ancestry individuals	660 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	4E-8	(MAP, during intervention)	3.37	[2.17-4.57] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	6E-6	(SBP, during intervention)	3.99	[2.27-5.71] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	4E-8	(DBP, during intervention)	3.2	[2.06-4.34] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174326844	174326845	rs10930597	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q31.1	CDCA7	rs10930597-T	0.05	1E-8	(MAP, during intervention)	3.48	[2.28-4.68] mmHg decrease	Affymetrix [2216774] (imputed)	N
1915	chr2	174334719	174334720	rs1852305	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs1852305-A	0.43	3E-6		1.1235955	[-0.9344-3.1816]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174335798	174335799	rs17701443	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs17701443-A	0.43	4E-6		1.010101	[-1.0283-3.0485]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174336000	174336001	rs7349340	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs7349340-A	0.57	4E-6		1.01	[-1.0088-3.0288]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174336490	174336491	rs12162359	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs12162359-T	0.43	3E-6		1.0309278	[-1.06627-3.12813]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174336867	174336868	rs72902949	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs72902949-A	0.43	3E-6		1.0869565	[-0.95144-3.12536]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174337307	174337308	rs12997689	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs12997689-T	0.43	3E-6		1.0416667	[-1.05553-3.13887]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174338321	174338322	rs13004465	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs13004465-A	0.57	4E-6		1.03	[-1.0672-3.1272]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174339647	174339648	rs12993899	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs12993899-T	0.57	4E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174340337	174340338	rs892359	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs892359-G	0.43	4E-6		1.0309278	[-0.98787-3.04973]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174342988	174342989	rs35828510	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs35828510-C	0.56	4E-6		1.0	[-1.0188-3.0188]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174343909	174343910	rs13008827	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	2q31.1	NR	rs13008827-C	0.56	5E-6		1.06	[-1.0176-3.1376]	Affymetrix [at least 143006] (imputed)	N
1915	chr2	174362348	174362349	rs7590983	19260139	Polasek O	2009-02-01	Croat Med J	Genome-wide association study of anthropometric traits in Korcula Island, Croatia.	Anthropometric traits	898 Korculan (founder/genetic isolate) individuals	NA	2q31.1	intergenic	rs7590983-?	0.05	6E-6	(BMI)	0.46	[0.26-0.66] kg/m2 increase	Illumina [316730]	N
1915	chr2	174432077	174432078	rs501548	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q31.1	NA	rs501548-G		2E-8		0.0108745	[0.0071-0.0147] unit decrease	Illumina [13288253] (imputed)	N
1915	chr2	174432647	174432648	rs13015604	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs13015604-T	0.019262	1E-13		0.0821686	[0.06-0.104] unit increase	NR [19129689] (imputed)	N
1915	chr2	174448916	174448917	rs6730483	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.1	NR	rs6730483-?	NR	1E-8				Affymetrix [NR]	N
1916	chr2	174462853	174462854	rs4972593	24029427	Sandholm N	2013-09-12	J Am Soc Nephrol	Chromosome 2q31.1 associates with ESRD in women with type 1 diabetes.	End-stage renal disease in Type 1 diabetics	258 European ancestry female cases, 935 European ancestry female controls, 387 European ancestry male cases, 655 European ancestry male controls	178 European ancestry female cases, 594 European ancestry female controls, 251 European ancestry male cases, 494 European ancestry male controls, 252 female cases, 479 female controls, 256 male cases, 342 male controls	2q31.1	CDCA7, SP3	rs4972593-A	0.14	4E-8	(Women)	1.81	[1.47-2.24]	Illumina [2400000] (imputed)	N
1916	chr2	174480880	174480881	rs755816	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2q31.1	NR	rs755816-C	0.193	6E-6	(Females)	0.28348	[0.16-0.41] unit decrease	Illumina [~ 6600000] (imputed)	N
1916	chr2	174495915	174495916	rs10171980	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs10171980-T	0.10026	1E-8		0.028791	[0.019-0.039] unit decrease	NR [19129689] (imputed)	N
1916	chr2	174504923	174504924	rs13028485	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		2q31.1	NR	rs13028485-A	0.06	2E-6	(t11;14 vs non t11;14)	2.17	[1.57-2.99]	Illumina [414804] (imputed)	N
1916	chr2	174550271	174550272	rs141283719	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		2q31.1	intergenic	rs141283719-A	0.0177885	5E-6		1.5288	[0.89-2.17] unit decrease	Illumina [640625] (imputed)	N
1916	chr2	174551930	174551931	rs921533	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q31.1	CDCA7, SP3	rs921533-T	0.658	2E-7		0.0290283	[0.018-0.04] unit increase	Illumina [13520550] (imputed)	N
1917	chr2	174601544	174601545	rs113371141	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Sensation seeking	22,745 European ancestry individuals	NA	2q31.1	CDCA7, SP3	rs113371141-T	0.9835	1E-6		0.206	[0.122-0.290] unit increase	Illumina [11434023] (imputed)	N
1917	chr2	174605495	174605496	rs1290142804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs1290142804-C	0.05401	1E-12	(CORO1B)	0.1573	NR unit increase	Illumina [1671387] (imputed)	N
1917	chr2	174605495	174605496	rs1290142804	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs1290142804-C	0.05401	1E-11	(FTL)	0.8338	NR unit increase	Illumina [1671387] (imputed)	N
1917	chr2	174605632	174605633	rs13405699	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2q31.1	CDCA7	rs13405699-C	NR	5E-10		0.309309	[0.21-0.41] unit increase	Affymetrix [27512692] (imputed)	N
1917	chr2	174605632	174605633	rs13405699	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs13405699-A	NR	4E-12		0.153614	NR unit increase	NR [NR] (imputed)	N
1917	chr2	174605632	174605633	rs13405699	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2q31.1	CDCA7, SP3	rs13405699-?	NR	5E-8		1.4880953	[1.29-1.72]	Illumina [13436641] (imputed)	N
1917	chr2	174607505	174607506	rs16862069	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs16862069-C	0.0204527	8E-55		0.167752	[0.15-0.19] unit increase	NR [19129689] (imputed)	N
1917	chr2	174607505	174607506	rs16862069	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs16862069-C	NR	1E-12		0.157621	NR unit increase	NR [NR] (imputed)	N
1917	chr2	174611305	174611306	rs7605909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs7605909-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1918	chr2	174742607	174742608	rs938291	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q31.1		rs938291-?	NR	1E-5		1.0375472	[1.0207560356756-1.05461459377935]	Illumina [up to 7827597] (imputed)	N
1918	chr2	174742607	174742608	rs938291	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	2q31.1	SP3	rs938291-G	0.39	6E-10		0.53	[0.35-0.71] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1918	chr2	174750959	174750960	rs1567854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q31.1	AC106900.6	rs1567854-A	0.757272	1E-9		0.015782207	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1918	chr2	174750959	174750960	rs1567854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q31.1	NR	rs1567854-T	0.243499	2E-10		0.014025	[0.0097-0.0183] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1918	chr2	174755713	174755714	rs77990474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs77990474-A	0.02091	7E-11	(RAC2)	0.01179	NR unit increase	Illumina [1671387] (imputed)	N
1918	chr2	174755713	174755714	rs77990474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs77990474-A	0.02091	5E-10	(CORO1A)	0.08465	NR unit increase	Illumina [1671387] (imputed)	N
1918	chr2	174755713	174755714	rs77990474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs77990474-A	0.02091	3E-8	(GSTP1)	0.1696	NR unit increase	Illumina [1671387] (imputed)	N
1918	chr2	174755713	174755714	rs77990474	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs77990474-A	0.02091	2E-8	(ARHGDIB)	0.06569	NR unit increase	Illumina [1671387] (imputed)	N
1918	chr2	174763913	174763914	rs78098692	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q31.1	AC106900.6	rs78098692-T	NR	1E-8		0.0226303	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1918	chr2	174763913	174763914	rs78098692	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q31.1	NR	rs78098692-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1918	chr2	174787495	174787496	rs10173522	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q31.1	NR	rs10173522-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1918	chr2	174801861	174801862	rs57645908	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q31.1		rs57645908-A	NR	2E-14		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1918	chr2	174808898	174808899	rs4325816	30213928	Went M	2018-09-13	Nat Commun	Identification of multiple risk loci and regulatory mechanisms influencing susceptibility to multiple myeloma.	Multiple myeloma	8,197 European ancestry cases, 241,468 European ancestry controls	1,777 European ancestry cases, 6,088 European ancestry controls	2q31.1	NR	rs4325816-T	0.77	7E-9		1.12		Illumina [up to 10291845] (imputed)	N
1918	chr2	174816355	174816356	rs6433457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs6433457-?	NR	7E-25				NR [~ 8900000] (imputed)	N
1918	chr2	174832966	174832967	rs16862227	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.1	SP3	rs16862227-T	0.2301	5E-19		0.02	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1918	chr2	174833760	174833761	rs12105631	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q31.1	RP11-394I13.2	rs12105631-A	NR	1E-8		0.02071	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1918	chr2	174837166	174837167	rs12614526	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs12614526-A	0.363823	2E-11		0.0214848	[0.015-0.028] unit increase	NR [19129689] (imputed)	N
1919	chr2	174851319	174851323	rs60868720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q31.1		rs60868720-G	NR	5E-8		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1919	chr2	174856492	174856492	rs113271760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q31.1		rs113271760-CCATCAG	0.096448	1E-12		0.02714039	[0.02-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1919	chr2	174863880	174863881	rs12467464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q31.1		rs12467464-G	NR	1E-9		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1919	chr2	174863880	174863881	rs12467464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q31.1		rs12467464-G	0.102127	8E-18		0.03160698	[0.024-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1919	chr2	174868316	174868317	rs17236206	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q31.1	NR	rs17236206-C	0.108052	2E-10		0.019017	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1919	chr2	174868754	174868755	rs17308476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q31.1		rs17308476-T	0.110034	2E-9		0.021076044	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1919	chr2	174868754	174868755	rs17308476	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q31.1	NR	rs17308476-C	0.88865	2E-11		0.0217511	[0.015-0.028] unit decrease	NR [NR]	N
1919	chr2	174871991	174871992	rs79897941	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q31.1	NR	rs79897941-?	NR	2E-8				Illumina [7760689] (imputed)	N
1919	chr2	174880860	174880861	rs72918744	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q31.1		rs72918744-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1919	chr2	174907204	174907205	rs4972634	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	2q31.1	NR	rs4972634-T	0.59	4E-6		1.31	[1.19-1.43]	NR [up to 6398204] (imputed)	N
1919	chr2	174925323	174925324	rs540756278	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q31.1	NR	rs540756278-?	NR	1E-6		1.11473	[0.66-1.57] unit increase	NR [13958389] (imputed)	N
1919	chr2	174928751	174928752	rs77998199	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q31.1		rs77998199-?	NR	2E-10				NR [7857346] (imputed)	N
1919	chr2	174928751	174928752	rs77998199	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	OLA1	rs77998199-?	NR	2E-10		0.010943	[0.0076-0.0143] unit increase	Affymetrix [805426] (imputed)	N
1919	chr2	174930015	174930016	rs2358443	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q31.1	OLA1	rs2358443-T	0.4251	3E-8		0.011234026	[0.0073-0.0152] unit decrease	Affymetrix [11514654] (imputed)	N
1919	chr2	174936180	174936181	rs2884442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.1	NR	rs2884442-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1919	chr2	174949357	174949358	rs11694601	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q31.1	OLA1	rs11694601-A	0.5968	6E-10		0.1909	[0.13-0.25] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1919	chr2	174957795	174957796	rs9636259	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	OLA1	rs9636259-?	NR	4E-8		0.0095128	[0.0061-0.0129] unit increase	Affymetrix [805426] (imputed)	N
1919	chr2	174960259	174960260	rs78164392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLA1	5,365 Icelandic ancestry individuals	NA	2q31.1		rs78164392-A	0.1951	4E-28		0.259459	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
1919	chr2	174961487	174961488	rs2044469	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q31.1	NA	rs2044469-A	0.6619	1E-13		0.0133	[0.0098-0.0168] unit decrease	NR [~ 27400000] (imputed)	N
1919	chr2	174961487	174961488	rs2044469	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q31.1	OLA1	rs2044469-A	0.6525	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1919	chr2	174965610	174965611	rs75107833	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	2q31.1	OLA1	rs75107833-?	NR	8E-6		1.758	[0.83-2.69] unit decrease	Illumina [at least 13000000] (imputed)	N
1919	chr2	174965610	174965611	rs75107833	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q31.1	OLA1	rs75107833-?	NR	2E-6		0.336	[0.17-0.5] unit decrease	Illumina [at least 13000000] (imputed)	N
1919	chr2	174968892	174968892	rs397765214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q31.1		rs397765214-TA	NR	8E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1919	chr2	174976832	174976833	rs77345174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q31.1	OLA1	rs77345174-T	0.8103125	9E-15	(OLA1, 12659_13_3)	0.24673557	[0.18-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1920	chr2	174995396	174995397	rs9679651	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	2q31.1	NR	rs9679651-?		3E-6				Illumina [892589]	N
1920	chr2	175012136	175012137	rs4972433	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q31.1		rs4972433-A	0.43	5E-11		6.57	z score increase	Affymetrix [9061022] (imputed)	N
1920	chr2	175017713	175017714	rs2119137	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q31.1	NA	rs2119137-A	0.6624	2E-13		0.0131	[0.0096-0.0166] unit decrease	NR [~ 27400000] (imputed)	N
1920	chr2	175048139	175048140	rs77104864	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q31.1	NR	rs77104864-T	NR	7E-12		0.0272	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1920	chr2	175082307	175082308	rs4131583	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	OLA1	rs4131583-?	NR	5E-9		0.010374	[0.0069-0.0138] unit increase	Affymetrix [805426] (imputed)	N
1920	chr2	175085994	175085995	rs75822153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q31.1		rs75822153-T	NR	7E-9		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1921	chr2	175133455	175133456	rs75286889	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q31.1	Intergenic	rs75286889-A	NR	7E-8	(between families)	5.379	unit increase	Affymetrix [up to 15107142] (imputed)	N
1921	chr2	175134231	175134232	rs12474669	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	2q31.1	OLA1	rs12474669-A	0.139	9E-12		0.415	[0.3-0.53] unit increase	Illumina [8400000] (imputed)	N
1921	chr2	175134231	175134232	rs12474669	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2q31.1	OLA1	rs12474669-A	0.139	2E-14	(EA)	0.417	[0.31-0.52] unit increase	Illumina [8400000] (imputed)	N
1921	chr2	175134231	175134232	rs12474669	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2q31.1	OLA1	rs12474669-A	0.138	1E-15		0.412	[0.31-0.51] unit increase	Illumina [8400000] (imputed)	N
1921	chr2	175134231	175134232	rs12474669	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	2q31.1	OLA1	rs12474669-A	0.139	2E-15		0.435	[0.33-0.54] unit increase	Illumina [8400000] (imputed)	N
1921	chr2	175166635	175166636	rs34234296	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q31.1		rs34234296-G	0.61	5E-9		0.012	mmol/L increase	NR [NR] (imputed)	N
1921	chr2	175166635	175166636	rs34234296	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q31.1		rs34234296-G	0.61	4E-10				NR [NR] (imputed)	N
1921	chr2	175166635	175166636	rs34234296	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q31.1		rs34234296-G	0.61	8E-15		0.012	% increase	NR [NR] (imputed)	N
1921	chr2	175166635	175166636	rs34234296	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.1	NR	rs34234296-?	NR	8E-17				Affymetrix [~ 8270000] (imputed)	N
1921	chr2	175166635	175166636	rs34234296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q31.1		rs34234296-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1921	chr2	175188280	175188281	rs2033867	27023175	Stringer S	2016-03-29	Transl Psychiatry	Genome-wide association study of lifetime cannabis use based on a large meta-analytic sample of 32 330 subjects from the International Cannabis Consortium.	Cannabis use	32,330 European ancestry individuals	2,660 African American individuals, 2,967 European ancestry individuals	2q31.1		rs2033867-A	0.06	4E-6		0.23	[0.13-0.33] unit increase	Affymetrix, Illumina [6444471] (imputed)	N
1921	chr2	175197544	175197545	rs12992995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q31.1		rs12992995-A	NR	3E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1921	chr2	175197544	175197545	rs12992995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q31.1		rs12992995-A	NR	3E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1921	chr2	175197544	175197545	rs12992995	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q31.1	NR	rs12992995-C	0.7323	2E-9		0.0312	[0.021-0.041] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1921	chr2	175197544	175197545	rs12992995	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q31.1	NR	rs12992995-C	0.7548	1E-8		0.0272	[0.018-0.037] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1921	chr2	175197544	175197545	rs12992995	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q31.1	NR	rs12992995-C	0.724774	3E-9		0.0142135	[0.0095-0.0189] unit increase	NR [NR]	N
1921	chr2	175199091	175199092	rs72915557	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q31.1	NA	rs72915557-G		3E-12		0.0267081	[0.019-0.034] unit decrease	Illumina [13288253] (imputed)	N
1921	chr2	175199091	175199092	rs72915557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs72915557-A	0.0581	2E-9	(conditional-joint)	0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1921	chr2	175199091	175199092	rs72915557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.1	Intergenic	rs72915557-A	0.0581	8E-10	(MTAG)	0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1921	chr2	175199475	175199475	rs199975274	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2q31.1	NR	rs199975274-?	NR	2E-6		0.1052	[0.062-0.149] unit increase	Illumina [11133794] (imputed)	N
1921	chr2	175205512	175205513	rs7582977	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	2q31.1	NR	rs7582977-C	NR	6E-9	(Cox proportional hazards regression model)	134.32	[25.76-700.33]	Illumina [810622]	N
1921	chr2	175205512	175205513	rs7582977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q31.1		rs7582977-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1921	chr2	175225017	175225018	rs72917504	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs72917504-T	0.0583	3E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1921	chr2	175238923	175238924	rs72917533	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q31.1	CIR1	rs72917533-T	0.814306	8E-11		0.011462	[0.008-0.0149] unit increase	Affymetrix [12370749]	N
1921	chr2	175238923	175238924	rs72917533	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q31.1	CIR1	rs72917533-T	0.814433	4E-8		0.0140903	[0.0091-0.0191] unit increase	Affymetrix [NR] (imputed)	N
1921	chr2	175239916	175239917	rs11686891	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2q31.1		rs11686891-?	NR	5E-13		0.0214	unit decrease	NR [NR]	N
1921	chr2	175241457	175241458	rs149110600	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q31.1	NR	rs149110600-A	NR	6E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
1921	chr2	175241481	175241482	rs6433478	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q31.1	CIR1	rs6433478-C	0.5399	1E-11		1.0256228		Affymetrix [11880941] (imputed)	N
1921	chr2	175241481	175241482	rs6433478	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Accelerometer-based physical activity measurement (fraction of time with accelerations >425 milli-gravities)	90,667 European ancestry individuals	NA	2q31.1	CIR1	rs6433478-T	0.46	5E-9	(model 2)	0.024	fraction of time decrease	Affymetrix [11800000] (imputed)	N
1921	chr2	175241565	175241566	rs72917544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q31.1	NR	rs72917544-A	NR	4E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1921	chr2	175241565	175241566	rs72917544	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q31.1	CIR1	rs72917544-A	0.1861	9E-13		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
1921	chr2	175241565	175241566	rs72917544	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	223,215 British ancestry individuals	111,610 British ancestry individuals	2q31.1	CIR1	rs72917544-A	0.19	2E-10		0.003	[0.0022-0.0038] unit increase	Affymetrix [15275733] (imputed)	N
1921	chr2	175243223	175243224	rs77625597	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.1	NR	rs77625597-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1922	chr2	175292363	175292364	rs17256082	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q31.1	SCRN3	rs17256082-T	0.666	3E-8		0.0069	[0.0044-0.0094] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1922	chr2	175292363	175292364	rs17256082	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	18,472 East Asian ancestry individuals	NA	2q31.1	SCRN3	rs17256082-C	0.2581	4E-7		0.0227	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1922	chr2	175295600	175295601	rs10930662	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.1	NR	rs10930662-?	NR	4E-34				Affymetrix [NR]	N
1922	chr2	175303244	175303245	rs12995528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q31.1		rs12995528-C	NR	7E-54		0.0377	[0.033-0.042] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1922	chr2	175315306	175315307	rs11686160	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q31.1	NR	rs11686160-?	NR	7E-7		0.0085913	[0.0052-0.012] unit increase	Affymetrix [805426] (imputed)	N
1923	chr2	175377564	175377565	rs12693043	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	28,610 European ancestry individuals	13,959 European ancestry individuals	2q31.1	GPR155, WIPF1	rs12693043-C	0.56	1E-7	(Combined sex)	0.008	[0.0041-0.0119] unit decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1923	chr2	175446733	175446734	rs1367217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q31.1	AC018890.6, WIPF1, AC010894.5	rs1367217-T	0.9587114	6E-11		0.036954146	[0.026-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1923	chr2	175446733	175446734	rs1367217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q31.1	AC018890.6, WIPF1, AC010894.5	rs1367217-T	0.9587202	1E-13		0.041691653	[0.031-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1923	chr2	175455303	175455304	rs4972699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs4972699-G	0.0455701	2E-14				Affymetrix, Illumina [17210439] (imputed)	N
1923	chr2	175455303	175455304	rs4972699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q31.1	NR	rs4972699-G	0.042449	2E-16		0.03919	[0.03-0.049] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1923	chr2	175467768	175467769	rs1991601	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	2q31.1	NR	rs1991601-?	NR	6E-9	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1923	chr2	175472838	175472839	rs13024657	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.1	WIPF1	rs13024657-C		4E-8		0.296	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1923	chr2	175472838	175472839	rs13024657	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.1	WIPF1	rs13024657-C		2E-9		0.216	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1924	chr2	175512819	175512820	rs7574892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2q31.1		rs7574892-A	NR	2E-9		0.0566	[0.038-0.075] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1924	chr2	175529966	175529967	rs72914576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.1		rs72914576-G	NR	6E-11		0.0181	[0.013-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1924	chr2	175529966	175529967	rs72914576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q31.1	AC018890.6	rs72914576-G	0.182674	4E-12		0.020170074	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1924	chr2	175529966	175529967	rs72914576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.1		rs72914576-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1924	chr2	175547672	175547672	rs564190295	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q31.1	WIPF1	rs564190295-GCCGCCGCCCCC	0.15	5E-10		0.3545	[0.24-0.47] unit decrease	Affymetrix [19941912] (imputed)	N
1924	chr2	175547998	175547999	rs186965396	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs186965396-A	0.02091	7E-9	(CAPNS1)	0.01979	NR unit increase	Illumina [1671387] (imputed)	N
1924	chr2	175547998	175547999	rs186965396	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs186965396-A	0.02091	6E-9	(LPP)	0.00544	NR unit increase	Illumina [1671387] (imputed)	N
1924	chr2	175547998	175547999	rs186965396	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs186965396-A	0.02091	5E-9	(CNN3)	0.01252	NR unit increase	Illumina [1671387] (imputed)	N
1924	chr2	175547998	175547999	rs186965396	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs186965396-A	0.02091	2E-8	(CNN2)	0.01266	NR unit increase	Illumina [1671387] (imputed)	N
1924	chr2	175555713	175555714	rs56181519	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q31.1	WIPF1	rs56181519-C	0.732	6E-18		1.07	[1.05-1.08]	Illumina [34740186] (imputed)	N
1924	chr2	175555713	175555714	rs56181519	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q31.1	WIPF1, CHRNA1	rs56181519-C	0.74	6E-20	(EA)	1.08	[1.07-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1924	chr2	175555713	175555714	rs56181519	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q31.1	WIPF1, CHRNA1	rs56181519-C	0.74	2E-19		1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1924	chr2	175558803	175558804	rs2358891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2q31.1		rs2358891-A	NR	1E-8		0.0399	[0.026-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1924	chr2	175594274	175594275	rs77530448	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	2q31.1	Intergenic	rs77530448-G	0.09	7E-8		0.36	[0.23-0.49] unit increase	NR [~ 38000000] (imputed)	N
1924	chr2	175629219	175629220	rs35274388	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Myasthenia gravis	1,873 European ancestry cases, 36,370 European ancestry controls	7,412 European ancestry individuals	2q31.1		rs35274388-A	0.036	1E-9		1.57	[1.34-1.84]	Illumina [24006246] (imputed)	N
1924	chr2	175629219	175629220	rs35274388	35074870	Chia R	2022-02-01	Proc Natl Acad Sci U S A	Identification of genetic risk loci and prioritization of genes and pathways for myasthenia gravis: a genome-wide association study.	Late-onset myasthenia gravis	1,278 European ancestry cases, 33,652 European ancestry controls	308 European ancestry cases, 7,056 European ancestry controls	2q31.1		rs35274388-A	0.036	1E-12		1.86	[1.56-2.23]	Illumina [24006246] (imputed)	N
1925	chr2	175636913	175636914	rs187076367	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q31.1	BC046497	rs187076367-A	0.999	1E-6	(AA)	1.863	NR unit increase	Illumina [NR] (imputed)	N
1926	chr2	175851588	175851589	rs188245701	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q31.1	CHN1	rs188245701-T	0.998	2E-7	(AA)	1.685	NR unit increase	Illumina [NR] (imputed)	N
1927	chr2	175939761	175939762	rs79907460	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2q31.1	ATF2	rs79907460-A	0.96	8E-7		2.01	[1.21-2.81] g/day increase	Affymetrix [10353649] (imputed)	N
1928	chr2	176098009	176098010	rs4972748	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.1		rs4972748-T	0.8204	1E-8		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1928	chr2	176107856	176107857	rs416219	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 202)	19,670 European ancestry individuals	NA	2q31.1		rs416219-?	NR	3E-8				NR [9705931] (imputed)	N
1928	chr2	176136005	176136006	rs146467657	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q31.1	Intergenic	rs146467657-?		4E-6		3.57	[2.08-6.13]	Illumina [7645193] (imputed)	N
1928	chr2	176140635	176140636	rs2043348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	ATF2	rs2043348-?	NR	6E-7	(CE 20:5)	1.0567056	[0.64-1.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
1928	chr2	176143155	176143156	rs115541647	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.1	NR	rs115541647-T	0.01916	2E-9	(PLD3)	0.01947	NR unit increase	Illumina [1671387] (imputed)	N
1929	chr2	176239848	176239849	rs4972755	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder or major depressive disorder	4,387 European and unknown ancestry bipolar disorder cases, 1,695 major depressive disorder cases, 7,970 European and unknown ancestry controls	NA	2q31.1	intergenic	rs4972755-?	NR	3E-6				Affymetrix, Perlegen [1472580] (imputed)	N
1929	chr2	176289318	176289319	rs2461751	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	2q31.1	intergenic	rs2461751-G	0.44	8E-6	(PR interval)	4.54	[2.58-6.50] ms increase	Affymetrix [338049]	N
1930	chr2	176309552	176309553	rs2437927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.1		rs2437927-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1930	chr2	176410424	176410425	rs1829813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q31.1		rs1829813-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1931	chr2	176451225	176451226	rs4281874	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	2q31.1	intergenic	rs4281874-?	NR	2E-8		0.0155421	[0.01-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1931	chr2	176473294	176473295	rs7571486	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q31.1	NR	rs7571486-G	0.749	1E-8		1.0395011	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1931	chr2	176480839	176480840	rs79101959	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q31.1	NR	rs79101959-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1931	chr2	176483880	176483881	rs4972778	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	2q31.1	KIAA1715	rs4972778-?	0.8	5E-6	(female)	1.317523	[1.18-1.49]	Illumina [5595657] (imputed)	N
1931	chr2	176532018	176532019	rs1446802	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	2q31.1		rs1446802-G	0.5001059	2E-6		1.07		Affymetrix [15650645] (imputed)	N
1931	chr2	176533432	176533433	rs2884836	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q31.1	KIAA1715	rs2884836-T	0.32	3E-8	(right exocanthion-right cheilion distance)	0.086	NR unit decrease	Illumina [7029494] (imputed)	N
1932	chr2	176565222	176565223	rs12053503	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q31.1		rs12053503-G	NR	1E-5		1.04959		Affymetrix, Illumina [62056310] (imputed)	N
1932	chr2	176621777	176621778	rs6710640	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	EVX2	rs6710640-?	NR	3E-6	(LPC 18:2)	0.25092503	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1932	chr2	176636491	176636492	rs7595419	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	2q31.1	NR	rs7595419-?	NR	3E-8	(Clostridium_purinilyticum)	2.69088	[2.34-3.04]	Illumina [5293637] (imputed)	N
1932	chr2	176636491	176636492	rs7595419	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	2q31.1	NR	rs7595419-?	NR	3E-8	(Clostridium_XII)	2.69088	[2.34-3.04]	Illumina [5293637] (imputed)	N
1932	chr2	176654737	176654738	rs7566934	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	2q31.1	EXTL2P1	rs7566934-A	0.29	7E-6	(simple RT)	0.13	[0.07-0.19] unit decrease	Illumina [~ 610000]	N
1932	chr2	176664865	176664866	rs78520610	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q31.1	NR	rs78520610-?	NR	4E-6		4.52	[3.46-5.91]	Illumina [539000] (imputed)	N
1933	chr2	176710084	176710085	rs13011467	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	2q31.1	intergenic	rs13011467-?	NR	6E-6		1.4504842	[1.23-1.7]	Illumina [at least 4756722] (imputed)	N
1933	chr2	176717740	176717741	rs9287989	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q31.1	NR	rs9287989-C	0.506579678879204	8E-9		0.008464801	[0.0056-0.0113] unit decrease	NR [NR]	N
1933	chr2	176717740	176717741	rs9287989	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q31.1	NR	rs9287989-C	0.506579678879204	4E-8		0.006910364	[0.0044-0.0094] unit decrease	NR [NR]	N
1933	chr2	176717740	176717741	rs9287989	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q31.1	NR	rs9287989-C	0.506579678879204	8E-9		0.005416278	[0.0036-0.0073] unit decrease	NR [NR]	N
1933	chr2	176717740	176717741	rs9287989	22699663	Divaris K	2012-07-01	J Dent Res	Genome-wide association study of periodontal pathogen colonization.	Periodontal microbiota	1,020 European ancestry individuals	NA	2q31.1	KIAA1715, EVX2, EXTLP2	rs9287989-C	0.484	4E-6	(A. actino)	1.8	[1.39-2.33]	Affymetrix [~ 2500000] (imputed)	N
1933	chr2	176717872	176717873	rs6433563	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q31.1	NR	rs6433563-G	0.506573214244853	3E-8		0.005100874	[0.0033-0.0069] unit decrease	NR [NR]	N
1933	chr2	176720024	176720025	rs752355	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.1		rs752355-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1933	chr2	176727833	176727834	rs10165846	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.1		rs10165846-?	NR	2E-10		0.0135793	[0.0095-0.0176] unit decrease	Affymetrix [20259828] (imputed)	N
1933	chr2	176730506	176730507	rs142127956	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	2q31.1	NR	rs142127956-?	NR	6E-6		0.4537	[0.25-0.66] unit increase	Illumina [at least 560000] (imputed)	N
1933	chr2	176734597	176734598	rs4972489	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	KIAA1715	rs4972489-C	0.366	8E-6	(Energy intake )	0.03	[NR] kcal/d increase	Illumina [899892]	N
1933	chr2	176734597	176734598	rs4972489	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	KIAA1715	rs4972489-C	0.366	8E-6	(Diet protein )	0.03	[NR] g/d increase	Illumina [899892]	N
1933	chr2	176784137	176784138	rs1020410	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q31.1	KIAA1715	rs1020410-G	0.268	6E-7	(Calorimeter activity )	0.04	[NR] counts/d increase	Illumina [899892]	N
1934	chr2	176859522	176859523	rs114230339	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q31.1	KIAA1715	rs114230339-T	0.966	5E-6	(AA)	0.252	NR unit increase	Illumina [NR] (imputed)	N
1934	chr2	176900270	176900271	rs847139	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	2q31.1	KIAA1715	rs847139-C	0.787	7E-11		1.11	[1.07-1.14]	Affymetrix [84000000] (imputed)	N
1934	chr2	176935524	176935525	rs1000032	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	2q31.1	intergenic	rs1000032-?	0.19	9E-6		0.63	unit increase	Illumina [828141]	N
1935	chr2	176951486	176951487	rs12474905	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q31.1	NR	rs12474905-T	0.2	2E-9		0.0139	[0.0093-0.0185] unit increase	NR [NR]	N
1935	chr2	176962101	176962102	rs847158	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (right hand)	12,636 European ancestry individuals	NA	2q31.1	HOXD12, HOXD11	rs847158-A	0.602	6E-9		0.243	[0.16-0.33] unit increase	Illumina [8400000] (imputed)	N
1935	chr2	176962101	176962102	rs847158	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2q31.1	HOXD12, HOXD11	rs847158-A	0.602	6E-7		0.176	[0.11-0.24] unit increase	Illumina [8400000] (imputed)	N
1935	chr2	176962101	176962102	rs847158	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio (left hand)	14,382 European ancestry individuals, 1,279 non-European ancestry individuals	NA	2q31.1	HOXD12, HOXD11	rs847158-A	0.602	1E-7	(EA)	0.199	[0.13-0.27] unit increase	Illumina [8400000] (imputed)	N
1935	chr2	176962101	176962102	rs847158	29659830	Warrington NM	2018-04-12	Hum Mol Genet	Genome-wide association study identifies nine novel loci for 2D:4D finger ratio, a putative retrospective biomarker of testosterone exposure in utero.	Digit length ratio	12,586 European ancestry individuals	NA	2q31.1	HOXD12, HOXD11	rs847158-A	0.602	1E-10		0.242	[0.17-0.31] unit increase	Illumina [8400000] (imputed)	N
1935	chr2	176962500	176962501	rs847157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.1		rs847157-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1935	chr2	176969205	176969206	rs741610	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.1	HOXD11	rs741610-A	0.6691	8E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1935	chr2	176970246	176970247	rs72923436	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Immature Myeloid-Derived Suppressor Cells %CD33dim HLA DR- CD66b-	1,857 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q31.1		rs72923436-A	0.0307	3E-8		0.5379	[0.35-0.73] unit decrease	Illumina [17203507] (imputed)	N
1935	chr2	176970455	176970456	rs847148	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q31.1	HOXD11	rs847148-?	0.3198	1E-17		0.96	[0.96-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
1935	chr2	176970658	176970659	rs847147	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q31.1	HOXD11	rs847147-G	0.739854	6E-17		0.0174866	[0.013-0.022] unit increase	NR [13737936] (imputed)	N
1935	chr2	176970658	176970659	rs847147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.1		rs847147-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1935	chr2	176970658	176970659	rs847147	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.1		rs847147-?	NR	2E-18		0.0191972	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q31.1		rs863678-T	NR	7E-31		0.0207	[0.017-0.024] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	2q31.1		rs863678-T	0.43951	1E-9		0.0192113	[0.013-0.025] unit increase	Illumina [13479135] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q31.1		rs863678-T	NR	2E-29		0.0191	[0.016-0.022] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	2q31.1		rs863678-T	0.439632	2E-9		0.0184292	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q31.1		rs863678-T	NR	1E-34		0.0213	[0.018-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	2q31.1		rs863678-T	0.439607	2E-10		0.0201478	[0.014-0.026] unit increase	Illumina [13478961] (imputed)	N
1935	chr2	176974103	176974104	rs863678	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Kidney volume	32,860 European ancestry individuals	NA	2q31.1	HOXD10	rs863678-?	NR	4E-8		0.0368	NR L decrease	Affymetrix [9390170] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q31.1	HOXD11	rs863678-T	0.642415	5E-26		0.024818446	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q31.1	HOXD11	rs863678-T	0.642472	2E-25		0.024619391	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q31.1	HOXD11	rs863678-T	0.642426	3E-31		0.027409833	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs863678-T	0.60212	4E-44				Affymetrix, Illumina [24332387] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q31.1	NR	rs863678-T	0.642602	1E-35		0.024842	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs863678-T	0.603644	2E-40				Affymetrix, Illumina [24653286] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q31.1	NR	rs863678-T	0.642629	4E-33		0.023868	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs863678-T	0.605056	1E-47				Affymetrix, Illumina [24558453] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q31.1	NR	rs863678-T	0.642439	2E-39		0.026145	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1935	chr2	176974103	176974104	rs863678	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q31.1	HOXD11	rs863678-G		1E-19		0.021	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1935	chr2	176974103	176974104	rs863678	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	2q31.1	AC009336.1, HOXD10, HOXD11	rs863678-T	0.640135	1E-8		0.036512	[0.025-0.048] unit increase	Illumina [24961484] (imputed)	N
1935	chr2	176974103	176974104	rs863678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q31.1		rs863678-?	NR	7E-27				NR [~ 8900000] (imputed)	N
1935	chr2	176974103	176974104	rs863678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q31.1	HOXD11	rs863678-T	0.6453	3E-9		0.02286242	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1935	chr2	176978832	176978833	rs711818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs711818-G	NR	2E-17		0.0229	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1935	chr2	176978832	176978833	rs711818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q31.1	NR	rs711818-G	NR	1E-21		0.0258	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176978832	176978833	rs711818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs711818-G	NR	1E-18		0.0238	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176981342	176981343	rs7601234	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q31.1	HOXD10	rs7601234-?	NR	1E-6				Illumina [859311]	N
1935	chr2	176982324	176982325	rs114841233	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GIP	5,352 Icelandic ancestry individuals	NA	2q31.1		rs114841233-A	0.01176	3E-12		0.155308	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
1935	chr2	176984543	176984544	rs72923454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q31.1		rs72923454-T	NR	3E-31		0.0718	[0.06-0.084] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1935	chr2	176991778	176991779	rs2592394	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	2q31.1	NR	rs2592394-?	NR	3E-6	(AA)	5.66	[4.8-6.52]	Illumina [905956]	N
1935	chr2	176991778	176991779	rs2592394	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	2q31.1	HOXD9	rs2592394-A	0.30	5E-7		0.0	[0.002-0.006] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1935	chr2	176991856	176991857	rs71421546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q31.1		rs71421546-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1935	chr2	176991856	176991857	rs71421546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs71421546-?	NR	6E-38				NR [~ 8900000] (imputed)	N
1935	chr2	176991856	176991857	rs71421546	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs71421546-A	0.0418593	2E-44		0.110164	[0.095-0.126] unit increase	NR [19129689] (imputed)	N
1935	chr2	176991856	176991857	rs71421546	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2q31.1	HOXD3	rs71421546-C	NR	1E-14		0.26782	[0.2-0.34] unit increase	Affymetrix [27512692] (imputed)	N
1935	chr2	176991856	176991857	rs71421546	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	EVX2, HOXD1, HOXD3, HOXD4, HOXD8, HOXD9, HOXD10, HOXD11, HOXD12, HOXD13	rs71421546-A	NR	3E-18		0.133572	NR unit increase	NR [NR] (imputed)	N
1935	chr2	176991923	176991924	rs6718516	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs6718516-G	0.343354	9E-10		0.0198596	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q31.1		rs187355703-C	0.974499	2E-13		0.0829868	[0.061-0.105] unit decrease	NR [11722792] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q31.1		rs187355703-G	NR	1E-18		0.0563	[0.044-0.069] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q31.1		rs187355703-G	NR	7E-21		0.0675	[0.053-0.082] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs187355703-G	NR	9E-21		0.0752	[0.06-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs187355703-G	NR	5E-20		0.0738	[0.058-0.09] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs187355703-G	NR	4E-30		0.0915	[0.076-0.107] unit decrease	Affymetrix [9000000] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q31.1	NR	rs187355703-G	NR	1E-25		0.0841	[0.068-0.1] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs187355703-G	NR	2E-31		0.0938	[0.078-0.109] unit increase	Affymetrix [9000000] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q31.1	HOXD8	rs187355703-C	0.9747	3E-11		0.086139	[0.061-0.111] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q31.1	HOXD8	rs187355703-C	0.9741	8E-30		0.01	[0.0078-0.0122] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q31.1	HOXD8	rs187355703-C	0.974	6E-30		0.0101	[0.0079-0.0123] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q31.1	HOXD8	rs187355703-G	0.03	3E-10		1.2155099	[1.14-1.29]	Affymetrix, Illumina [9585923] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q31.1	HOXD8	rs187355703-C	0.9741	3E-6		0.0137	[0.008-0.0194] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q31.1	HOXD8	rs187355703-G	0.016	1E-9		1.098	[0.31-1.89] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1935	chr2	176993582	176993583	rs187355703	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2q31.1	HOXD8	rs187355703-C	0.97	5E-10		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [up to 10971307] (imputed)	N
1935	chr2	177004025	177004026	rs11888604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.1		rs11888604-T	NR	1E-11		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1935	chr2	177007804	177007805	rs34526934	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q31.1	HOXD3, HOXD4, MIR10B, HOXD-AS2	rs34526934-A		4E-7	(men)	0.087	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1935	chr2	177007804	177007805	rs34526934	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q31.1	HOXD3, HOXD4, MIR10B, HOXD-AS2	rs34526934-A		1E-6		0.06	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1935	chr2	177009481	177009481	rs11386425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q31.1		rs11386425-CT	NR	6E-9		0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1935	chr2	177010550	177010551	rs55799551	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q31.1	MIR10B	rs55799551-G	0.6546	4E-8		0.2034	[0.13-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1935	chr2	177012569	177012570	rs4972805	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.1	HOXD-AS2, MIR10B	rs4972805-C		9E-6		0.184	unit increase	Affymetrix [at least 2696785] (imputed)	N
1935	chr2	177012569	177012570	rs4972805	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.1	HOXD-AS2, MIR10B	rs4972805-C		2E-8		0.143	unit increase	Affymetrix [at least 2696785] (imputed)	N
1935	chr2	177012577	177012578	rs4972806	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q31.1	NR	rs4972806-C	0.635161429906542	8E-6	(IGP47)	0.1425	[0.08-0.205] unit increase	Illumina [~ 2500000] (imputed)	N
1935	chr2	177016011	177016012	rs13418288	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	2q31.1	HOXD3, HOXD4	rs13418288-C	0.62	9E-6		1.724138		Affymetrix [at least 730985] (imputed)	N
1935	chr2	177018725	177018726	rs4972504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q31.1		rs4972504-C	0.778617	2E-8		0.013421	[0.0087-0.0181] unit decrease	Illumina [13479295] (imputed)	N
1935	chr2	177021400	177021401	rs4972505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q31.1		rs4972505-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1935	chr2	177022157	177022158	rs2551802	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	2q31.1	HOXD	rs2551802-G	0.697	2E-12		0.04	[0.029-0.052] unit increase	Illumina [7428049] (imputed)	N
1935	chr2	177027291	177027292	rs34720456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q31.1		rs34720456-A	NR	4E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	3E-14		1.1312215	[1.09591680302958-1.16766347713436]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	5E-8		1.1790794	[1.11145306187694-1.25082055006039]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	1E-14		1.2736082	[1.19835894617868-1.35358269315725]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	3E-6		1.1855859	[1.10400745880938-1.27319220749772]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	4E-14		1.1120843	[1.08193543636327-1.14307327686388]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319015999999999	8E-13		1.1268522	[1.09069613461779-1.16420663147032]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	2q31.1	NR	rs711830-A	0.319	3E-15		1.12	[1.09-1.15]	Illumina [11595112] (imputed)	N
1935	chr2	177037310	177037311	rs711830	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	2q31.1	HOXD3	rs711830-?	0.32	8E-7	(Invasive Only)	1.26	[1.15-1.39]	Illumina [15504273] (imputed)	N
1935	chr2	177037310	177037311	rs711830	26075790	Kelemen LE	2015-06-15	Nat Genet	Genome-wide significant risk associations for mucinous ovarian carcinoma.	Mucinous ovarian carcinoma	1,003 European ancestry invasive cases, 641 European ancestry low malignant potential cases, 21,693 European ancestry controls	NA	2q31.1	HOXD3	rs711830-?	0.32	8E-12		1.3	[1.20-1.40]	Illumina [15504273] (imputed)	N
1935	chr2	177042632	177042633	rs2072590	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	2q31.1	HOXD1	rs2072590-A	0.68	9E-14		1.14	[1.10-1.19]	Illumina [up to 10962898] (imputed)	N
1935	chr2	177042632	177042633	rs2072590	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	2q31.1	NR	rs2072590-?	0.32	5E-11	(All invasive)	1.11	[1.08-1.15]	Illumina [2508744] (imputed)	N
1935	chr2	177042632	177042633	rs2072590	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	2q31.1	NR	rs2072590-?	0.32	3E-10	(Serious invasive)	1.13	[1.09-1.18]	Illumina [2508744] (imputed)	N
1935	chr2	177042632	177042633	rs2072590	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	2q31.1	HOXD1, HOXD3	rs2072590-T	NR	5E-14		1.16	[1.12-1.21]	Illumina [2056878] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	2E-14		1.1323612	[1.09696977445389-1.1688944318043]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous borderline ovarian cancer	1,954 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	3E-6		1.1861752	[1.1045500086088-1.27383238173854]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	1E-13		1.2623247	[1.18761263149067-1.34173680787849]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	6E-8		1.1783675	[1.11072142428685-1.25013339797474]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	4E-14		1.1121821	[1.0819829343715-1.14322428681774]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319447	5E-13		1.1282876	[1.09203474654839-1.16574376009934]	Illumina [11595112] (imputed)	N
1935	chr2	177043225	177043226	rs6755777	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	2q31.1	NR	rs6755777-T	0.319	3E-15		1.12	[1.09-1.15]	Illumina [11595112] (imputed)	N
1935	chr2	177047171	177047172	rs72929103	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	2q31.1	HAGLR	rs72929103-A	0.04	4E-9		1.33	[1.21-1.47]	Affymetrix [710030]	N
1935	chr2	177053425	177053426	rs150457564	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q31.1	HOXD8, HOXD10, HOXD3, HOXD9, HOXD4	rs150457564-C	0.0221	1E-14		7.715	NR z score decrease	Illumina [26237160] (imputed)	N
1935	chr2	177054180	177054181	rs150112597	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	2q31.1	HOXD1	rs150112597-C	0.006	2E-8		0.28	[0.18-0.38] unit decrease	Illumina [at least 81396]	N
1935	chr2	177054768	177054769	rs6710142	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs6710142-A	NR	5E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1935	chr2	177058315	177058316	rs1374326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.1		rs1374326-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1935	chr2	177074772	177074773	rs6748131	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs6748131-T	NR	4E-9		0.0614706	NR unit increase	NR [NR] (imputed)	N
1935	chr2	177076889	177076890	rs6714226	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	2q31.1	Intergenic	rs6714226-T	0.45	3E-6	(additive)	0.07	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
1936	chr2	177086772	177086773	rs71421553	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs71421553-A	NR	7E-13		0.119204	NR unit increase	NR [NR] (imputed)	N
1936	chr2	177096307	177096308	rs3850167	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs3850167-T	0.4571	3E-11		0.020898	[0.015-0.027] unit increase	NR [19129689] (imputed)	N
1936	chr2	177097021	177097022	rs72929920	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q31.1	MTX2	rs72929920-T	0.03	8E-7		1.1395	[1.082-1.2]	Affymetrix, Illumina [9585923] (imputed)	N
1936	chr2	177097021	177097022	rs72929920	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q31.1	MTX2	rs72929920-T	0.0308	3E-8		0.0137	[0.0088-0.0186] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1936	chr2	177104753	177104754	rs72929935	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.1	HOXD1	rs72929935-T	0.979	3E-13		0.0094	[0.0069-0.0119] unit increase	Affymetrix [NR] (imputed)	N
1936	chr2	177104753	177104754	rs72929935	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.1	HOXD1	rs72929935-T	0.9786	7E-13	(EA)	0.0093	[0.0068-0.0118] unit increase	Affymetrix [NR] (imputed)	N
1936	chr2	177111818	177111819	rs970797	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	2q31.1	NR	rs970797-?	NR	1E-14	(Quadrant I (Philtrum), Segment 33)	0.04666336	NR unit increase	NR [7417619] (imputed)	N
1936	chr2	177111818	177111819	rs970797	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Mouth morphology	2,659 Han Chinese ancestry individuals	NA	2q31.1	NR	rs970797-?	NR	5E-6				Illumina [4757938] (imputed)	N
1936	chr2	177111818	177111819	rs970797	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Eye morphology	2,659 Han Chinese ancestry individuals	NA	2q31.1	NR	rs970797-?	NR	3E-7				Illumina [4757938] (imputed)	N
1936	chr2	177111818	177111819	rs970797	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q31.1		rs970797-T	0.431837607	5E-68				Illumina [7417619] (imputed)	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	9E-8	(Right eyelid peak position ratio)	0.007	[NR] unit decrease	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	7E-9	(Tangent line angle of el3)	0.015	[0.0091-0.0209] unit increase	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	4E-9	(Tangent line angle of er3)	0.015	[0.0091-0.0209] unit increase	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	4E-6	(Tangent line angle of el4)	0.011	[NR] unit increase	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	2E-7	(Tangent line angle of er4)	0.012	[NR] unit increase	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	1E-7	(Tangent line angle of el6)	0.012	[NR] unit decrease	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	2q31.1	HOXD1, MTX2	rs970797-A	0.33	9E-7	(Right eye tail length)	0.236	[NR] unit increase	Affymetrix [311944]	N
1936	chr2	177111818	177111819	rs970797	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q31.1	NR	rs970797-?	NR	3E-8				Illumina [at least 7383741] (imputed)	N
1936	chr2	177111818	177111819	rs970797	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	2q31.1	HOXD1, MTX2	rs970797-?	NR	9E-12		0.025	[0.032-0.018] unit decrease	Illumina [12039491] (imputed)	N
1936	chr2	177177413	177177414	rs35534179	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	MTX2	rs35534179-G	NR	4E-9		0.134828	NR unit increase	NR [NR] (imputed)	N
1936	chr2	177190495	177190496	rs182432357	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	2q31.1		rs182432357-T	0.01191	2E-6		2.986	[1.9-4.693]	Affymetrix [7975321] (imputed)	N
1936	chr2	177200017	177200018	rs72925159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q31.1	NR	rs72925159-G	NR	4E-12		0.0418	[0.03-0.054] unit increase	Affymetrix [9000000] (imputed)	N
1936	chr2	177200017	177200018	rs72925159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q31.1	NR	rs72925159-G	NR	8E-12		0.0413	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1936	chr2	177200017	177200018	rs72925159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs72925159-G	NR	2E-15		0.0477	[0.036-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1936	chr2	177200017	177200018	rs72925159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q31.1	NR	rs72925159-G	NR	3E-15		0.0476	[0.036-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1936	chr2	177200017	177200018	rs72925159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.1	NR	rs72925159-G	NR	7E-17		0.0503	[0.039-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1937	chr2	177219077	177219078	rs72938846	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2q31.1	MTX2	rs72938846-T	0.974	7E-11		1.23	[0.86-1.6] unit increase	Affymetrix [NR] (imputed)	N
1937	chr2	177226166	177226167	rs34769088	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	MTX2	rs34769088-A	NR	4E-9		0.13401	NR unit increase	NR [NR] (imputed)	N
1937	chr2	177258203	177258204	rs17338026	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High activity stress	8,104 Korean ancestry individuals	NA	2q31.1		rs17338026-C	NR	1E-5		1.47	[1.24-1.75]	Affymetrix [320700]	N
1937	chr2	177273271	177273272	rs10198459	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q31.1	MTX2	rs10198459-T	0.2533	1E-13		0.0268	[0.02-0.034] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1937	chr2	177273271	177273272	rs10198459	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q31.1	NR	rs10198459-T	0.7501	1E-6	(women)	0.0254	[0.015-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1937	chr2	177273271	177273272	rs10198459	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q31.1	NR	rs10198459-T	0.7333	3E-9	(men)	0.0336	[0.022-0.045] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1938	chr2	177346281	177346282	rs201796065	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs201796065-T	NR	8E-10		0.153704	NR unit increase	NR [NR] (imputed)	N
1938	chr2	177362095	177362096	rs976973	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q31.1	MIR1246	rs976973-A	0.33	4E-6		1.12	[0.65-1.59] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1938	chr2	177365618	177365619	rs10178696	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 24)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q31.1		rs10178696-A	0.27305167	3E-11				Illumina [7417619] (imputed)	N
1938	chr2	177371846	177371847	rs59156997	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q31.1	MTX2, HNRNPA3	rs59156997-?	NR	2E-19		1.1990408	[1.15-1.25]	Illumina [13537761] (imputed)	N
1938	chr2	177374157	177374158	rs7603658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.1		rs7603658-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1938	chr2	177396516	177396517	rs16863925	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs16863925-A	0.014886	3E-24		0.128133	[0.1-0.15] unit increase	NR [19129689] (imputed)	N
1938	chr2	177452716	177452717	rs115202890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs115202890-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1939	chr2	177486885	177486886	rs1900769	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.1		rs1900769-?	NR	1E-10		0.0155357	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
1939	chr2	177508621	177508622	rs2594950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q31.1	NR	rs2594950-G	0.656035	3E-10		0.012755	[0.0088-0.0167] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1939	chr2	177509008	177509009	rs10199487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.1		rs10199487-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1939	chr2	177514849	177514850	rs76557027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.1		rs76557027-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1939	chr2	177514849	177514850	rs76557027	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.1		rs76557027-?	NR	1E-10		0.023529	[0.016-0.031] unit increase	Affymetrix [20259828] (imputed)	N
1939	chr2	177526155	177526156	rs2594948	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2q31.1	NR	rs2594948-T	0.68939	2E-8		0.0183656	[0.012-0.025] unit increase	Affymetrix [16577424] (imputed)	N
1939	chr2	177526155	177526156	rs2594948	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.1		rs2594948-?	NR	6E-9		0.0127209	[0.0084-0.0171] unit increase	Affymetrix [20259828] (imputed)	N
1939	chr2	177531502	177531503	rs12616772	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q31.1	LINC01117	rs12616772-A	0.3425	5E-10		0.0119805	[0.0082-0.0157] unit increase	NR [13737936] (imputed)	N
1939	chr2	177544550	177544551	rs4894192	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Agouti-related protein levels	21,758 European ancestry individuals	9,173 individuals	2q31.1		rs4894192-C	0.67	2E-13		0.067	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1939	chr2	177549496	177549497	rs868179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.1	HOXD1	rs868179-?	NR	7E-7	(indole-3-propionate)	0.38200065	[0.23-0.53] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1939	chr2	177584960	177584961	rs6718863	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs6718863-C	0.415958	4E-32		0.0371509	[0.031-0.043] unit increase	NR [19129689] (imputed)	N
1939	chr2	177594982	177594983	rs6737860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs6737860-?	NR	9E-33				NR [~ 8900000] (imputed)	N
1939	chr2	177594982	177594983	rs6737860	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs6737860-C	NR	6E-15		0.0479956	NR unit increase	NR [NR] (imputed)	N
1940	chr2	177603718	177603719	rs12693099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q31.1		rs12693099-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1940	chr2	177603718	177603719	rs12693099	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q31.1	MTX2	rs12693099-?	NR	2E-10		1.0665529	NR	Affymetrix [9154080] (imputed)	N
1940	chr2	177616843	177616844	rs17668846	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs17668846-C	NR	5E-9		0.0438392	NR unit decrease	NR [NR] (imputed)	N
1940	chr2	177642909	177642910	rs17639982	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q31.1	Intergenic	rs17639982-C	NR	8E-9	(between families)	5.774	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1940	chr2	177645590	177645590	rs113517532	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	2q31.1	AC092162.1	rs113517532-AGAT	0.106	2E-6	(EA)	1.75	[NR]	Illumina [6728637] (imputed)	N
1940	chr2	177691542	177691543	rs12472159	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs12472159-G	NR	3E-10		0.0428393	NR unit decrease	NR [NR] (imputed)	N
1940	chr2	177697881	177697882	rs1819008	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2q31.1		rs1819008-T	0.46	1E-9		0.12	[0.081-0.159] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1940	chr2	177697881	177697882	rs1819008	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs1819008-T	NR	3E-13		0.05	NR unit decrease	NR [NR] (imputed)	N
1940	chr2	177697881	177697882	rs1819008	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2q31.1	MTX2, HNRNPA3	rs1819008-?	NR	4E-8		1.1312217	[1.08-1.18]	Illumina [13436641] (imputed)	N
1940	chr2	177722758	177722759	rs6433618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs6433618-C	0.677563	1E-15				Affymetrix, Illumina [24332387] (imputed)	N
1940	chr2	177727080	177727081	rs1918865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q31.1		rs1918865-C	0.569703	3E-16		0.01815554	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1940	chr2	177727080	177727081	rs1918865	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q31.1	NR	rs1918865-C	0.567864	1E-17		0.015975	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1941	chr2	177742123	177742124	rs9287993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q31.1		rs9287993-?	NR	7E-13				NR [~ 8900000] (imputed)	N
1941	chr2	177748584	177748585	rs9287994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.1	NR	rs9287994-C	0.658144	1E-9				Affymetrix, Illumina [24558453] (imputed)	N
1941	chr2	177748584	177748585	rs9287994	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q31.1	NR	rs9287994-C	0.567974	2E-11		0.013226	[0.0094-0.0171] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1941	chr2	177761827	177761828	rs10930758	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2q31.1	HOXD3	rs10930758-A	NR	3E-13		0.102827	[0.075-0.13] unit decrease	Affymetrix [27512692] (imputed)	N
1941	chr2	177761827	177761828	rs10930758	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs10930758-G	NR	7E-16		0.0499825	NR unit decrease	NR [NR] (imputed)	N
1941	chr2	177769747	177769748	rs1358453	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q31.1	NR	rs1358453-A	0.449774	1E-10		0.011916	[0.0083-0.0155] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1941	chr2	177771216	177771217	rs1554770	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	1,541 European ancestry cases, 2,634 European ancestry controls	NA	2q31.1	Intergenic	rs1554770-A	0.55	8E-6		1.2345679	[1.12-1.35]	Illumina [102585]	N
1941	chr2	177779130	177779131	rs10930763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q31.1		rs10930763-T	0.550175	2E-9		0.0133384885	[0.009-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1941	chr2	177779130	177779131	rs10930763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q31.1		rs10930763-T	0.5502	6E-10		0.013743977	[0.0094-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1941	chr2	177794253	177794254	rs10186950	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs10186950-C	0.495013	1E-35		0.0390636	[0.033-0.045] unit decrease	NR [19129689] (imputed)	N
1941	chr2	177858517	177858518	rs6755476	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q31.1	NR	rs6755476-C	NR	2E-8		0.105683	NR unit increase	NR [NR] (imputed)	N
1942	chr2	177907229	177907230	rs34480822	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q31.1	NR	rs34480822-T	0.0604106	5E-16		0.0523091	[0.04-0.065] unit increase	NR [19129689] (imputed)	N
1942	chr2	177909594	177909595	rs1529093	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	2q31.1	intergenic	rs1529093-A	0.41	2E-6	(BallonTT)	4.13	[NR] unit increase	Illumina [324623]	N
1942	chr2	177912202	177912203	rs10198127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q31.1		rs10198127-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1942	chr2	177921856	177921857	rs7557162	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	2q31.1	RPL29P8, KRT8P40	rs7557162-A	0.10	4E-7		0.47	[0.29-0.65] unit decrease	Illumina [7797526] (imputed)	N
1942	chr2	177936402	177936403	rs10497465	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	2q31.1	NR	rs10497465-?	NR	7E-6		0.071329035	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1943	chr2	178062746	178062747	rs3109083	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q31.2	intergenic	rs3109083-G	0.7154	3E-8		0.1667	[0.11-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1943	chr2	178092161	178092162	rs2706110	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q31.2	MIR4444-1, MIR3128	rs2706110-T		2E-6		0.212	unit increase	Affymetrix [at least 2696785] (imputed)	N
1943	chr2	178092161	178092162	rs2706110	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.2	MIR4444-1, MIR3128	rs2706110-T		9E-9		0.182	unit increase	Affymetrix [at least 2696785] (imputed)	N
1943	chr2	178101234	178101235	rs2364717	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q31.2	NR	rs2364717-T	0.539195	3E-16		0.00603367	[0.0044-0.0077] unit increase	Affymetrix [16582909] (imputed)	N
1943	chr2	178101234	178101235	rs2364717	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q31.2	NR	rs2364717-T	0.538422	2E-12		0.00760965	[0.0052-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1943	chr2	178101234	178101235	rs2364717	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q31.2	NR	rs2364717-T	0.539195	6E-10		0.00530146	[0.0035-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1943	chr2	178101234	178101235	rs2364717	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q31.2	NR	rs2364717-T	0.538422	2E-7		0.00671975	[0.0039-0.0095] unit increase	Affymetrix [16585866] (imputed)	N
1943	chr2	178121523	178121524	rs35284526	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q31.2	NFE2L2	rs35284526-A	0.3237	1E-26		0.0029	[0.0023-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1943	chr2	178122364	178122365	rs12471433	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2q31.2	NFE2L2	rs12471433-A	0.702	2E-10		0.367	[0.25-0.48] unit increase	Affymetrix [NR] (imputed)	N
1943	chr2	178122364	178122365	rs12471433	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.2	NFE2L2	rs12471433-A	0.618	2E-14		0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1943	chr2	178125141	178125142	rs34468415	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q31.2	NFE2L2	rs34468415-A	0.6436	1E-24		0.0028	[0.002-0.0036] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1943	chr2	178126545	178126546	rs2364723	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q31.2	NFE2L2	rs2364723-G	0.680846	3E-9		0.0121743	[0.0082-0.0162] unit decrease	Affymetrix [NR] (imputed)	N
1944	chr2	178134057	178134058	rs35258028	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q31.2		rs35258028-C	NR	8E-31		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1944	chr2	178134676	178134677	rs6433657	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q31.2	NFE2L2	rs6433657-A	0.4697	4E-11	(EA)	0.0023	[0.0017-0.0029] unit increase	Affymetrix [NR] (imputed)	N
1944	chr2	178141062	178141063	rs2364730	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q31.2	NFE2L2	rs2364730-G	NR	3E-8		0.0171393	[0.011-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1944	chr2	178143370	178143371	rs35955110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.2	NR	rs35955110-C	NR	5E-22		0.0248	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1944	chr2	178143370	178143371	rs35955110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q31.2	NR	rs35955110-C	NR	2E-23		0.0257	[0.021-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1944	chr2	178143370	178143371	rs35955110	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q31.2	NFE2L2	rs35955110-C	0.435	4E-9		0.353	[0.16-0.55] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1944	chr2	178144812	178144813	rs35440573	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q31.2	NR	rs35440573-G	0.321	7E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1944	chr2	178146361	178146362	rs17581525	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q31.2	AC074286.1	rs17581525-G	0.1889	6E-11		6.541	NR z score increase	Illumina [26237160] (imputed)	N
1944	chr2	178153429	178153430	rs58723250	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q31.2	NR	rs58723250-T	0.20047800000000005	2E-23		0.0351228	[0.028-0.042] unit increase	Affymetrix [16580851] (imputed)	N
1944	chr2	178154342	178154343	rs56117787	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q31.2	NR	rs56117787-G	0.19947499999999996	2E-14		0.0126732	[0.0095-0.0158] unit increase	Affymetrix [16578495] (imputed)	N
1944	chr2	178162585	178162586	rs2444563	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.2	AC019080.1	rs2444563-T	0.7921	9E-16		0.0186	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
1944	chr2	178167085	178167086	rs72948115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q31.2	NR	rs72948115-C	0.905166	2E-10		0.0122306	[0.0084-0.0161] unit increase	Affymetrix [16582621] (imputed)	N
1944	chr2	178167085	178167086	rs72948115	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q31.2	NR	rs72948115-C	0.905166	5E-9		0.0122848	[0.0082-0.0164] unit increase	Affymetrix [16582614] (imputed)	N
1944	chr2	178171917	178171918	rs13002088	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q31.2	NR	rs13002088-A	0.784	4E-8		0.00879412	[0.0057-0.0119] unit increase	NR [~ 9732723] (imputed)	N
1944	chr2	178190490	178190491	rs12992747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q31.2		rs12992747-C	NR	7E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1944	chr2	178190490	178190491	rs12992747	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q31.2	NR	rs12992747-A	0.227279	1E-11		0.0159919	[0.011-0.021] unit increase	NR [NR]	N
1944	chr2	178226530	178226530	rs371347025	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q31.2	NR	rs371347025-T	0.395157	8E-10		0.014419	[0.0092-0.0196] unit increase	Affymetrix [16585745] (imputed)	N
1945	chr2	178322023	178322024	rs116039674	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q31.2	NR	rs116039674-A		8E-13		0.22	[0.16-0.28] unit increase	NR [NR]	N
1945	chr2	178322023	178322024	rs116039674	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q31.2	AGPS	rs116039674-A	0.9599	6E-6		0.0868	[0.049-0.124] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1946	chr2	178418574	178418575	rs1348850	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q31.2	TTC30B	rs1348850-A		4E-6		1.22	[1.02-1.46]	Affymetrix, Illumina [NR] (imputed)	N
1946	chr2	178471406	178471407	rs10201883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q31.2		rs10201883-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1947	chr2	178551957	178551958	rs6433691	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	2q31.2	PDE11A	rs6433691-A	0.241	6E-6			[NR]	Illumina [625127]	N
1947	chr2	178555031	178555032	rs4893980	29212154	Lin E	2017-09-16	Oncotarget	Detection of susceptibility loci on APOA5 and COLEC12 associated with metabolic syndrome using a genome-wide association study in a Taiwanese population.	Diastolic blood pressure	1,811 Taiwanese Han Chinese individuals with metabolic syndrome, 8,489 Taiwanese Han Chinese ancestry individuals without metabolic syndrome	NA	2q31.2	PDE11A	rs4893980-?		1E-6	(additive)	1.228	[0.74-1.72] unit increase	Affymetrix [583469]	N
1947	chr2	178561984	178561985	rs145344540	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PDE11A	rs145344540-?	NR	1E-9	(male)	0.738884	[NR] unit increase	Affymetrix [NR] (imputed)	N
1947	chr2	178561984	178561985	rs145344540	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PDE11A	rs145344540-?	NR	1E-8		0.41	[NR] unit increase	Affymetrix [NR] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q31.2		rs17400325-C	NR	4E-22		0.0402	[0.032-0.048] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q31.2	PDE11A, AC012499.1	rs17400325-C	NR	3E-10		0.0483913	[0.033-0.063] unit increase	Affymetrix [323123] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q31.2	NR	rs17400325-?	NR	4E-8		0.339055	[0.22-0.46] unit increase	NR [13958389] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q31.2	NR	rs17400325-C	0.0389	2E-10		0.0177892	[0.012-0.023] unit decrease	NR [9732723] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.2		rs17400325-?	NR	2E-38				NR [~ 8900000] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.2	Intergenic	rs17400325-T	0.9598	8E-9	(MTAG)	0.0193	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q31.2	NR	rs17400325-T	0.9555	8E-17		0.1383	[0.11-0.17] unit increase	Illumina [~ 10600000] (imputed)	N
1947	chr2	178565912	178565913	rs17400325	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2q31.2	PDE11A	rs17400325-?	NR	1E-20		1.1848341	[1.14-1.23]	Illumina [13762925] (imputed)	N
1947	chr2	178571623	178571623	rs71010816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q31.2	NR	rs71010816-GT	NR	5E-9		0.0176	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1947	chr2	178571632	178571632	rs398105011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q31.2		rs398105011-GT	NR	1E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1947	chr2	178576051	178576052	rs6718702	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	2q31.2	NA	rs6718702-T		3E-12		0.0150899	[0.011-0.019] unit decrease	Illumina [13288253] (imputed)	N
1947	chr2	178577641	178577642	rs6708025	34311721	Alotaibi RN	2021-07-26	BMC Oral Health	Genome-Wide Association Study (GWAS) of dental caries in diverse populations.	Permanent dental caries (decayed and filled teeth)	2,570 adults	NA			rs6708025-?	NR	1E-7		3.0	unit decrease	Illumina [8859951] (imputed)	N
1947	chr2	178649967	178649968	rs62183050	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q31.2	PDE11A	rs62183050-T	0.1758	6E-6		0.0404	[0.023-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1948	chr2	178661125	178661126	rs7584946	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q31.2		rs7584946-T	0.566	6E-10		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1948	chr2	178661125	178661126	rs7584946	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	2q31.2	PDE11A	rs7584946-?	0.429	2E-8		1.1653097	[1.1-1.23]	Affymetrix [NR] (imputed)	N
1948	chr2	178680430	178680431	rs13413635	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q31.2	PDE11A	rs13413635-G	0.033	3E-7				Affymetrix, Illumina [2516789] (imputed)	N
1948	chr2	178684719	178684720	rs7567851	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q31.2	PDE11A	rs7567851-C	0.08	3E-8		0.037	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1948	chr2	178716600	178716601	rs1837164	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q31.2	PDE11A	rs1837164-A	0.3697	5E-9		0.1824	[0.12-0.24] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1948	chr2	178768661	178768662	rs13003683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.2		rs13003683-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1949	chr2	178828506	178828507	rs2573081	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q31.2	HNRNPA3, NFE2L2, PDE11A, RBM45, OSBPL6, FKBP7, PLEKHA3, TTN, SESTD1	rs2573081-?		1E-70				Affymetrix, Illumina [NR] (imputed)	N
1949	chr2	178828506	178828507	rs2573081	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q31.2	PDE11A	rs2573081-C	0.5235	2E-16		8.212	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1949	chr2	178837810	178837811	rs12615720	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q31.2	NR	rs12615720-T		1E-30		0.13	[0.11-0.15] unit increase	NR [NR]	N
1949	chr2	178844942	178844943	rs2695743	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	2q31.2	PDE11A	rs2695743-?	NR	6E-7		2.2727273	[1.64-3.12]	Illumina [8600000] (imputed)	N
1949	chr2	178854059	178854060	rs2217839	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q31.2	NR	rs2217839-?	NR	6E-10		0.126562	[0.086-0.167] unit increase	NR [13958389] (imputed)	N
1949	chr2	178855810	178855811	rs112405294	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.2	PDE11A	rs112405294-A	0.0821	8E-14		0.0256	[0.019-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1949	chr2	178871445	178871446	rs116825096	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q31.2	PDE11A	rs116825096-T	0.02	2E-9	(African American)	0.8	0.54-1.07 unit increase	Illumina [NR] (imputed)	N
1950	chr2	178955021	178955022	rs145244554	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q31.2	NR	rs145244554-?	NR	5E-6	(EA)	0.6734	[0.39-0.96] unit increase	Illumina [up to 11892802] (imputed)	N
1950	chr2	178993328	178993329	rs79699670	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q31.2	NR	rs79699670-G		6E-10		0.2	[0.14-0.26] unit increase	NR [NR]	N
1950	chr2	179039571	179039572	rs12997449	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q31.2	OSBPL6	rs12997449-A	0.8741	4E-8		0.017940694	[0.012-0.024] unit decrease	Affymetrix [11514654] (imputed)	N
1951	chr2	179066442	179066443	rs334110	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q31.2	NR	rs334110-?	NR	7E-6		0.123297	[0.069-0.177] unit increase	NR [13958389] (imputed)	N
1951	chr2	179095184	179095185	rs334040	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	2q31.2	OSBPL6	rs334040-A	0.309772	5E-7		0.386951	[0.24-0.54] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1951	chr2	179104297	179104298	rs34479159	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	2q31.2	TTN	rs34479159-C	0.19	6E-6		0.089	[0.050-0.128] cup size increase	Illumina [7422970] (imputed)	N
1952	chr2	179188950	179188951	rs79358798	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	2q31.2		rs79358798-?	NR	1E-5		4.59025	[3.92-5.26]	NR [674885]	N
1952	chr2	179243247	179243248	rs6738749	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	2q31.2	OSBPL6	rs6738749-A	0.27	8E-6	(female)	1.24	[0.69-1.79] unit increase	Illumina [6380737] (imputed)	N
1952	chr2	179243247	179243248	rs6738749	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	2q31.2	OSBPL6	rs6738749-A	0.27	1E-6		0.957	[0.57-1.34] unit increase	Illumina [6380737] (imputed)	N
1952	chr2	179244985	179244986	rs1347297	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q31.2	OSBPL6	rs1347297-T	NR	5E-8	(within families)	5.469	unit increase	Affymetrix [up to 15107142] (imputed)	N
1952	chr2	179248419	179248420	rs7580640	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	2q31.2	NR	rs7580640-C	0.80	3E-6		3.64	[2.13-5.15] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1952	chr2	179260381	179260382	rs2304340	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q31.2	MIR548N	rs2304340-A	0.4084	4E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
1952	chr2	179260381	179260382	rs2304340	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q31.2	MIR548N	rs2304340-A	0.4084	4E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix [19819130] (imputed)	N
1952	chr2	179260652	179260653	rs34253857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q31.2	NR	rs34253857-G	NR	3E-16		0.0207	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1952	chr2	179266798	179266799	rs115142950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	OSBPL6	rs115142950-T	0.967919	6E-9	(-20 ms)	0.094306	[0.063-0.126] unit increase	Affymetrix [10000000] (imputed)	N
1952	chr2	179266798	179266799	rs115142950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	OSBPL6	rs115142950-T	0.967919	4E-9	(-22 ms)	0.0926802	[0.061-0.124] unit increase	Affymetrix [10000000] (imputed)	N
1952	chr2	179266798	179266799	rs115142950	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	OSBPL6	rs115142950-T	0.967919	4E-8	(-18 ms)	0.0868626	[0.055-0.118] unit increase	Affymetrix [10000000] (imputed)	N
1952	chr2	179289249	179289253	rs145766673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q31.2	FKBP7	rs145766673-C	0.173	8E-71	(Peptidyl-prolyl cis-trans isomerase FKBP7, FKBP7.9288.7.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
1952	chr2	179296270	179296271	rs9283487	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls	NA	2q31.2	PRKRA	rs9283487-?	NR	3E-7	(OCB positive vs. controls)	1.61	[1.33-1.92]	Illumina [495970]	N
1952	chr2	179300970	179300971	rs62176107	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	2q31.2	PRKRA, miRNA548n	rs62176107-?	NR	1E-34	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1952	chr2	179303975	179303976	rs10930831	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q31.2	FKBP7	rs10930831-G	0.768125	2E-39	(FKBP7, 9288_7_3)	0.36523244	[0.31-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
1953	chr2	179309164	179309165	rs75862065	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	2q31.2	NR	rs75862065-A	NR	2E-7		0.026	[0.016-0.036] unit increase	Illumina [242289]	N
1953	chr2	179309164	179309165	rs75862065	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	2q31.2	NR	rs75862065-A	0.3	3E-6		0.024	unit increase	Illumina [242289]	N
1953	chr2	179315030	179315031	rs61999302	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on plasmacytoid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q31.2		rs61999302-C	0.01604	2E-8		0.6305	[0.41-0.85] unit decrease	Illumina [17926607] (imputed)	N
1953	chr2	179327872	179327873	rs6710856	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FKBP7	5,357 Icelandic ancestry individuals	NA	2q31.2		rs6710856-A	0.2303	2E-61		0.340787	[0.3-0.38] unit increase	Illumina [7506463] (imputed)	N
1953	chr2	179337263	179337264	rs137968292	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q31.2	FKBP7	rs137968292-T	0.011	3E-10		0.056	[0.039-0.073] unit increase	Affymetrix [18391927] (imputed)	N
1953	chr2	179345182	179345183	rs71423566	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q31.2	FKBP7, PLEKHA3	rs71423566-T	0.32	6E-16		8.09	z-score increase	Affymetrix [4314223] (imputed)	N
1953	chr2	179345182	179345183	rs71423566	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q31.2	FKBP7, PLEKHA3	rs71423566-T	0.32	1E-8		5.74	z-score increase	Affymetrix [4312306] (imputed)	N
1953	chr2	179345182	179345183	rs71423566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q31.2	NR	rs71423566-T	NR	7E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1953	chr2	179345182	179345183	rs71423566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q31.2		rs71423566-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1953	chr2	179367559	179367560	rs13026251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q31.2		rs13026251-T	NR	8E-9		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1953	chr2	179381322	179381323	rs6735077	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial passive emptying fraction	35,658 British ancestry individuals	NA	2q31.2		rs6735077-?	NR	6E-9		0.422	[0.28-0.56] unit increase	Affymetrix [10600000] (imputed)	N
1953	chr2	179383729	179383730	rs17226357	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FKBP7	5,357 Icelandic ancestry individuals	NA	2q31.2		rs17226357-G	0.1588	2E-35		0.299295	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
1953	chr2	179388993	179388994	rs16866369	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q31.2	LOC100506866	rs16866369-?	NR	7E-6		0.121	[0.056-0.186] unit decrease	Illumina [at least 13000000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	4E-13		1.094	[0.8-1.39] unit increase	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	8E-9		0.5809	[0.38-0.78] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	5E-14		0.3005	[0.22-0.38] unit increase	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	2E-17		1.4532	[1.12-1.79] unit increase	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-diastolic volume	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	1E-11		1.9887	[1.41-2.57] unit increase	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179389741	179389742	rs6755784	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction	19,260 European ancestry individuals	NA	2q31.2	TTN	rs6755784-G	0.8156	4E-10		0.4556	[0.31-0.6] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1953	chr2	179398508	179398509	rs3731752	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	2q31.2	TTN	rs3731752-?	NR	8E-6				Affymetrix [753382]	N
1953	chr2	179411664	179411665	rs2288327	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q31.2	TTN, MIR548N, FKBP7, TTN-AS1	rs2288327-G	0.156	7E-25		1.1	[1.08-1.12]	Illumina [34740186] (imputed)	N
1953	chr2	179411664	179411665	rs2288327	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q31.2	TTN	rs2288327-G	0.16	3E-23	(EA)	1.11	[1.08-1.13]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1953	chr2	179411664	179411665	rs2288327	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	2q31.2	TTN-AS1, TTN	rs2288327-G	0.15803	9E-10		1.1898652	[1.12883991331669-1.25418946585943]	Illumina [8952551] (imputed)	N
1953	chr2	179414632	179414633	rs890578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2q31.2		rs890578-A	NR	2E-19		0.1076	[0.084-0.131] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1953	chr2	179421293	179421294	rs35504893	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q31.2	TTN	rs35504893-T	0.25	7E-25		1.09	[1.08-1.11]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1953	chr2	179421469	179421470	rs16866397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	TTN	rs16866397-T	0.856707	5E-13	(-20 ms)	0.0577545	[0.042-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
1953	chr2	179421469	179421470	rs16866397	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	TTN	rs16866397-T	0.856707	2E-18	(-22 ms)	0.0694646	[0.054-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
1953	chr2	179432184	179432185	rs12463674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q31.2		rs12463674-G	NR	1E-17		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1954	chr2	179489725	179489726	rs12614435	29290336	Nielsen JB	2018-01-04	Am J Hum Genet	Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.	Atrial fibrillation	6,337 European ancestry cases, 61,607 European ancestry controls	30,679 European ancestry cases, 278,895 European ancestry controls	2q31.2	TTN	rs12614435-G	0.155	7E-18		1.1	[1.08-1.13]	Illumina [8952551] (imputed)	N
1954	chr2	179494797	179494798	rs72677215	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	2q31.2		rs72677215-T	0.02	3E-8				NR [NR] (imputed)	N
1954	chr2	179531078	179531078	rs71394376	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 4)	18,096 European individuals		2q31.2	NR	rs71394376-AATGT	0.21368	2E-10		0.081639	[0.056-0.107] unit decrease	Affymetrix [14134301] (imputed)	N
1954	chr2	179531078	179531078	rs71394376	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		2q31.2	NR	rs71394376-AATGT	0.21368	1E-11		0.086827	[0.062-0.112] unit decrease	Affymetrix [14134301] (imputed)	N
1954	chr2	179531078	179531078	rs71394376	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 2)	18,096 European individuals		2q31.2	NR	rs71394376-AATGT	0.21368	1E-7		0.068122	unit decrease	Affymetrix [14134301] (imputed)	N
1954	chr2	179554304	179554305	rs2244492	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q31.2	NR	rs2244492-T	NR	2E-20		0.0228	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	2q31.2	TTN	rs2042995-T	0.7759	1E-13		1.1105345	1.08-1.14	Affymetrix, Illumina [up to 7736182] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q31.2	TTN, CCDC141	rs2042995-C	0.2488	8E-28		0.8218	[0.67-0.97] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular end-systolic volume	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	2q31.2	TTN	rs2042995-?	NR	6E-23				Affymetrix [13660711] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular end-diastolic volume	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	2q31.2	TTN	rs2042995-?	NR	2E-14				Affymetrix [13660711] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	32382064	Pirruccello JP	2020-05-07	Nat Commun	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy.	Left ventricular ejection fraction	35,407 European ancestry individuals, 95 African ancestry individuals, 108 East Asian ancestry individuals, 303 South Asian ancestry individuals, 128 individuals	940 European ancestry individuals, 299 East Asian ancestry individuals, 507 African American individuals, 438 Hispanic individuals	2q31.2	TTN	rs2042995-?	NR	1E-18				Affymetrix [13660711] (imputed)	N
1954	chr2	179558365	179558366	rs2042995	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q31.2	TTN	rs2042995-C	0.23	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1955	chr2	179575948	179575949	rs200655768	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	2q31.2	TTN	rs200655768-?	NR	3E-7	(East and South Asian)			NR [at least 880000]	N
1955	chr2	179598227	179598228	rs12993099	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	2q31.2		rs12993099-A	0.92	1E-7		0.057	[0.035-0.079] unit increase	Affymetrix [NR]	N
1955	chr2	179602407	179602408	rs144308062	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	2q31.2	NR	rs144308062-C	0.0204	4E-7		0.5503	[0.34-0.76] unit increase	Illumina [10677593] (imputed)	N
1955	chr2	179615886	179615887	rs922984	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	2q31.2	TTN	rs922984-T	0.07	2E-11		1.5	[1.05-1.95] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1955	chr2	179626079	179626080	rs35770984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q31.2		rs35770984-A	NR	4E-14		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1955	chr2	179626079	179626080	rs35770984	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q31.2		rs35770984-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1955	chr2	179641974	179641975	rs12476289	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	2q31.2	TTN	rs12476289-A	0.07	2E-6		0.29	[0.17-0.41] unit increase	Illumina [~ 318327]	N
1955	chr2	179647545	179647546	rs55863869	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	2q31.2	TTN	rs55863869-?	NR	6E-9				Affymetrix, Illumina [22000000] (imputed)	N
1955	chr2	179647545	179647546	rs55863869	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q31.2	TTN	rs55863869-A	0.84	2E-10		1.92	[1.33-2.51] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1955	chr2	179650407	179650408	rs35813871	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	2q31.2	TTN	rs35813871-A	0.2663	6E-9		1.13	[1.09-1.18]	Affymetrix, Illumina [NR] (imputed)	N
1955	chr2	179650953	179650954	rs6715901	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q31.2	NR	rs6715901-G	0.5116	3E-9		0.0273	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1955	chr2	179650953	179650954	rs6715901	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q31.2	NR	rs6715901-G	0.5728	1E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1955	chr2	179674928	179674929	rs2129108	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	2q31.2	NR	rs2129108-A	NR	8E-6		0.7948	NR unit increase	Illumina [4533042] (imputed)	N
1955	chr2	179684982	179684983	rs1489486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.2		rs1489486-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1955	chr2	179689855	179689856	rs7561149	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	2q31.2	TTN, CCDC141	rs7561149-C	0.42	7E-9		0.52	[0.34-0.7] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1955	chr2	179698944	179698945	rs16866554	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	2q31.2	CCDC141	rs16866554-A	0.135184	4E-6	(omega-3 PUFA)			Illumina [621723]	N
1956	chr2	179713667	179713668	rs13004438	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	2q31.2	intergenic	rs13004438-T	0.569195	6E-7	(EA)	0.020397	[0.012-0.028] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
1956	chr2	179717216	179717217	rs6711319	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Number of pregnancies	981 Tibetan ancestry individuals	NA	2q31.2	CCDC141	rs6711319-G		2E-8		0.76	[NR] unit decrease	Illumina [3507697] (imputed)	N
1956	chr2	179717216	179717217	rs6711319	30188897	Jeong C	2018-09-06	PLoS Genet	Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.	Number of live births	981 Tibetan ancestry individuals	NA	2q31.2	CCDC141	rs6711319-G		3E-9		0.773	[NR] unit decrease	Illumina [3507697] (imputed)	N
1956	chr2	179721045	179721046	rs17362588	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	2q31.2	TTN	rs17362588-G	0.91587	7E-8		0.346499	[0.22-0.47] unit decrease	Affymetrix [8590397] (imputed)	N
1956	chr2	179721045	179721046	rs17362588	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q31.2	CCDC141	rs17362588-A	0.086	1E-8		0.2589	[0.17-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
1956	chr2	179721045	179721046	rs17362588	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q31.2	CCDC141	rs17362588-A	0.0864	2E-13		0.324	[0.24-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
1956	chr2	179721045	179721046	rs17362588	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	2q31.2	CCDC141	rs17362588-A	0.093659	6E-16		0.451694	[0.34-0.56] ms increase	Illumina [162199]	N
1956	chr2	179721045	179721046	rs17362588	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	2q31.2	CCDC141	rs17362588-A	0.0871946166688177	3E-11		0.5329457	[0.38-0.69] ms increase	Illumina [213295]	N
1956	chr2	179721045	179721046	rs17362588	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2q31.2	CCDC141, TTN	rs17362588-G	0.917255	2E-9		0.0621949	[0.042-0.083] unit increase	Affymetrix [509255] (imputed)	N
1956	chr2	179721045	179721046	rs17362588	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q31.2	CCDC141	rs17362588-A	0.114	4E-26		0.736	[0.59-0.89] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1956	chr2	179721071	179721072	rs150493199	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking cessation	121,543 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	2q31.2	CCDC141	rs150493199-A	0.0098	1E-8		0.048	[-0.21464-0.31064] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1956	chr2	179725236	179725237	rs151041685	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q31.2	CCDC141, TTN	rs151041685-T	0.09	8E-75		1.0613	[0.95-1.17] unit increase	Affymetrix [19941912] (imputed)	N
1956	chr2	179738268	179738269	rs11693319	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q31.2	CCDC141	rs11693319-T	0.02	2E-7	(SBP)	4.72	[2.94-6.50] mmHg decrease	Affymetrix [2216774] (imputed)	N
1956	chr2	179747067	179747068	rs142556838	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	2q31.2		rs142556838-C	0.91	3E-9		0.049	[0.033-0.065] unit increase	Affymetrix [8918919] (imputed)	N
1956	chr2	179747067	179747068	rs142556838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q31.2		rs142556838-T	NR	2E-13		0.0308	[0.023-0.039] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1956	chr2	179754193	179754194	rs7591091	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q31.2	CCDC141	rs7591091-T		1E-8		0.217	unit increase	Affymetrix [at least 2696785] (imputed)	N
1956	chr2	179754193	179754194	rs7591091	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q31.2	CCDC141	rs7591091-T		1E-6	(EA)	0.202	unit increase	Affymetrix [at least 2696785] (imputed)	N
1956	chr2	179754193	179754194	rs7591091	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q31.2	CCDC141	rs7591091-T		2E-7		0.131	unit increase	Affymetrix [at least 2696785] (imputed)	N
1956	chr2	179759691	179759692	rs35596070	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2q31.2	CCDC141, TTN	rs35596070-C	0.855807	1E-9		0.0501742	[0.034-0.066] unit increase	Affymetrix [509255] (imputed)	N
1956	chr2	179759691	179759692	rs35596070	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (10 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	2q31.2	CCDC141, TTN	rs35596070-C	0.855792	7E-13		0.060024	[0.044-0.076] unit increase	Affymetrix [509255] (imputed)	N
1956	chr2	179770174	179770175	rs34883828	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	2q31.2	CCDC141	rs34883828-A	0.1523	1E-7		1.15	[1.09-1.21]	Affymetrix, Illumina [NR] (imputed)	N
1956	chr2	179775151	179775152	rs955738	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	CCDC141	rs955738-T	0.521114	2E-36	(-22 ms)	0.0685979	[0.058-0.08] unit decrease	Affymetrix [10000000] (imputed)	N
1956	chr2	179775151	179775152	rs955738	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q31.2	CCDC141	rs955738-T	0.521114	2E-35	(-20 ms)	0.0684735	[0.057-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
1956	chr2	179786067	179786068	rs79146658	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Heart rate	4,988 Spanish ancestry individuals	NA	2q31.2	CCDC141, LOC105373766	rs79146658-?		3E-10	(Heart rate)	2.359	[1.62-3.09] unit increase	Illumina [9499600] (imputed)	N
1956	chr2	179786067	179786068	rs79146658	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q31.2	CCDC141	rs79146658-T	0.91	2E-10		0.311	[0.21-0.41] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1956	chr2	179793838	179793839	rs115150884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q31.2		rs115150884-G	NR	6E-15		0.0454	[0.034-0.057] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1956	chr2	179795727	179795728	rs116376069	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	2q31.2		rs116376069-T	0.01043	3E-12		0.629572	[0.45-0.81] unit decrease	Illumina [7506463] (imputed)	N
1956	chr2	179795727	179795728	rs116376069	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	2q31.2		rs116376069-T	NR	5E-8		0.533	[0.34-0.73] unit decrease	Affymetrix [509886] (imputed)	N
1957	chr2	179839887	179839888	rs10497529	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	2q31.2		rs10497529-G	0.96	1E-11		0.085	[0.06-0.11] unit increase	Affymetrix [8918919] (imputed)	N
1957	chr2	179839887	179839888	rs10497529	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	2q31.2	CCDC141	rs10497529-G	0.964	5E-15				Affymetrix [~ 7800000] (imputed)	N
1957	chr2	179839887	179839888	rs10497529	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	2q31.2	CCDC141	rs10497529-G	0.964	3E-9		0.968	[0.65-1.29] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1957	chr2	179839887	179839888	rs10497529	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q31.2	NR	rs10497529-A	0.04	1E-22		1.1	[0.88-1.32] unit increase	Affymetrix [19941912] (imputed)	N
1957	chr2	179840917	179840918	rs11675573	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass	19,260 European ancestry individuals	NA	2q31.2	CCDC141	rs11675573-C	0.6545	1E-6		0.5984	[0.36-0.84] unit increase	Affymetrix [~ 9500000] (imputed)	N
1957	chr2	179840917	179840918	rs11675573	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	2q31.2	CCDC141	rs11675573-C	0.6545	9E-6		0.1448	[0.081-0.209] unit increase	Affymetrix [~ 9500000] (imputed)	N
1957	chr2	179840917	179840918	rs11675573	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	2q31.2	CCDC141	rs11675573-C	0.6545	2E-9		0.8421	[0.57-1.12] unit increase	Affymetrix [~ 9500000] (imputed)	N
1957	chr2	179840917	179840918	rs11675573	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular ejection fraction	19,260 European ancestry individuals	NA	2q31.2	CCDC141	rs11675573-C	0.6545	1E-6		0.2904	[0.17-0.41] unit decrease	Affymetrix [~ 9500000] (imputed)	N
1957	chr2	179856776	179856777	rs1032833	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	2q31.2	NR	rs1032833-?	NR	7E-6		10.76	[6.24-15.28] unit decrease	Illumina [498648]	N
1957	chr2	179860561	179860562	rs13019215	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	2q31.2	CCDC141	rs13019215-C		8E-6	(multivariable, dominant)	4.347826	[2.33-8.33]	Illumina [729373]	N
1957	chr2	179863362	179863363	rs16866587	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (revised physical anhedonia scale)	3,988 Finnish ancestry individuals	NA	2q31.2	CCDC141	rs16866587-?		2E-6				Illumina [~ 9600000] (imputed)	N
1957	chr2	179863362	179863363	rs16866587	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised physical anhedonia scale)	3,787 Finnish ancestry individuals	NA	2q31.2	CCDC141	rs16866587-?		4E-6				Illumina [~ 9600000] (imputed)	N
1957	chr2	179867984	179867985	rs12471607	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	2q31.2	CCDC141	rs12471607-C		8E-6	(multivariable, dominant)	4.347826	[2.33-8.33]	Illumina [729373]	N
1957	chr2	179933411	179933412	rs340349	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	2q31.2	NR	rs340349-?		2E-7		4.79	[3.16-6.42] unit increase	Illumina [~ 4900000] (imputed)	N
1958	chr2	179980069	179980070	rs2044479	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q31.2	NR	rs2044479-G		2E-9		0.06	[0.04-0.08] unit increase	NR [NR]	N
1958	chr2	179980069	179980070	rs2044479	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	2q31.2	SESTD1	rs2044479-?	NR	6E-7				Illumina [1365181]	N
1958	chr2	179985543	179985544	rs116323614	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Objective response to lithium treatment	323 European ancestry bipolar disorder responder cases, 6,684 European ancestry controls	NA	2q31.2	SESTD1, CCDC141	rs116323614-A	0.03	3E-8		3.14	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1958	chr2	180004447	180004448	rs62177277	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q31.2	SESTD1	rs62177277-T	0.056	2E-6	(liability model)	0.16	[0.1-0.22] unit increase	NR [19725427] (imputed)	N
1958	chr2	180083590	180083591	rs11901421	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.2	NR	rs11901421-?	NR	8E-8				Affymetrix [NR]	N
1959	chr2	180135182	180135183	rs62179067	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q31.2	Intergenic	rs62179067-T	0.941	8E-7	(liability model)	0.16	[0.1-0.22] unit decrease	NR [19725427] (imputed)	N
1959	chr2	180146274	180146275	rs6733818	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	2q31.2	intergenic	rs6733818-G	0.4	7E-6		1.1	[1.05-1.15]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1959	chr2	180175926	180175927	rs13022913	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q31.2	SESTD1	rs13022913-T	0.57	6E-9		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1959	chr2	180216730	180216731	rs13403289	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	2q31.2	SESTD1	rs13403289-?	0.3857	6E-6	(ACL, LAC, or anti-B2 GPI)	2.423	[NR]	Affymetrix [906600]	N
1960	chr2	180334968	180334969	rs12478234	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q31.2	NR	rs12478234-A	NR	1E-6		1.09	[NR]	Illumina [7158791] (imputed)	N
1960	chr2	180335134	180335135	rs1581253	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	2q31.2	NR	rs1581253-A		7E-6				NR [525577]	N
1961	chr2	180361305	180361306	rs139852787	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	2q31.2		rs139852787-G	NR	5E-6		1.4431	unit increase	Illumina [NR] (imputed)	N
1961	chr2	180435220	180435221	rs563885038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neuropathic bladder	308 East Asian ancestry cases, 178,418 East Asian ancestry controls	NA	2q31.2		rs563885038-A	0.002142776	2E-8		8.545116	[5.59-11.5] unit increase	Illumina [13429980] (imputed)	N
1961	chr2	180435220	180435221	rs563885038	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neuropathic bladder	2,237 European ancestry cases, 464,793 European ancestry controls, 308 East Asian ancestry cases, 178,418 East Asian ancestry controls	NA	2q31.2		rs563885038-A	NR	2E-8		8.5451	[5.59-11.5] unit increase	Affymetrix, Illumina [25842983] (imputed)	N
1961	chr2	180440831	180440832	rs16866800	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q31.2	NR	rs16866800-?	NR	6E-8				Affymetrix [NR]	N
1961	chr2	180458770	180458771	rs10169561	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q31.2	NR	rs10169561-C	0.464294	6E-9		0.00475254	[0.0031-0.0064] unit increase	Affymetrix [16582909] (imputed)	N
1961	chr2	180458770	180458771	rs10169561	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q31.2	NR	rs10169561-C	0.464294	2E-9		0.00543339	[0.0036-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
1962	chr2	180497922	180497923	rs6718154	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2q31.2	NR	rs6718154-T	0.27475499999999997	1E-22		0.0322455	[0.026-0.039] unit increase	Affymetrix [16577424] (imputed)	N
1962	chr2	180500949	180500950	rs10192634	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2q31.2	NR	rs10192634-T	0.26890400000000003	2E-11		0.0231899	[0.016-0.03] unit increase	Affymetrix [16577313] (imputed)	N
1962	chr2	180500949	180500950	rs10192634	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2q31.2	NR	rs10192634-T	0.268761	5E-13		0.0166649	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1962	chr2	180566677	180566678	rs16866933	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q31.3	ZNF385B	rs16866933-?	0.09	6E-14	(Recessive)	1.69	[1.48-1.93]	Affymetrix [319222]	N
1962	chr2	180579237	180579238	rs73973711	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q31.3	NR	rs73973711-G	0.02091	2E-8	(CBR3)	0.1713	NR unit decrease	Illumina [1671387] (imputed)	N
1963	chr2	180707524	180707525	rs138006970	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q31.3	NR	rs138006970-?	NR	9E-6		0.301222	[0.17-0.43] unit increase	NR [13958389] (imputed)	N
1963	chr2	180715334	180715335	rs10196283	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q31.3	NR	rs10196283-A	NR	4E-8		5.508	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1963	chr2	180715705	180715706	rs13407401	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q31.3	intergenic	rs13407401-A	0.291	9E-7		0.228	[0.14-0.32] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1963	chr2	180715705	180715706	rs13407401	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q31.3	intergenic	rs13407401-A	0.291	4E-8	(EA, initial)	0.434	[0.28-0.59] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1963	chr2	180725309	180725310	rs2170240	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFD	5,341 Icelandic ancestry individuals	NA	2q31.3		rs2170240-C	0.3691	4E-16		0.139299	[0.11-0.17] unit decrease	Illumina [7506463] (imputed)	N
1963	chr2	180738653	180738654	rs4894132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.3		rs4894132-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1963	chr2	180738839	180738840	rs259842	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q31.3	Intergenic	rs259842-T	0.379397	4E-15	(EA, Mannan-binding lectin serine protease 1)	0.3506	[0.26-0.44] unit increase	Affymetrix [509946]	N
1963	chr2	180739449	180739450	rs1486236	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q31.3	ZNF385B	rs1486236-A	0.3716	1E-13		0.1365	[0.1-0.17] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1963	chr2	180744883	180744884	rs74623336	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	2q31.3		rs74623336-?	NR	1E-8				Illumina [1128286]	N
1964	chr2	180841913	180841914	rs12693217	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q31.3	NR	rs12693217-G	NR	7E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1964	chr2	180848487	180848488	rs3845702	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q31.3	CWC22	rs3845702-A	NR	1E-6		1.058	[1.04-1.08]	Illumina [6627481] (imputed)	N
1964	chr2	180848487	180848488	rs3845702	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q31.3	intergenic	rs3845702-A	NR	6E-8		1.063	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1964	chr2	180858026	180858027	rs141030318	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q31.3	CWC22	rs141030318-A	0.0109424344881066	1E-6	(O_Lactobacillales_HB)	1.5073	[0.9-2.12] unit decrease	Illumina [7711310] (imputed)	N
1965	chr2	180908534	180908535	rs195810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q31.3	Intergenic	rs195810-A	0.512	2E-10	(MTAG)	0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1965	chr2	180925444	180925445	rs11694904	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.3	Intergenic	rs11694904-T	0.3112	7E-13	(MTAG)	0.0101	[0.0074-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1965	chr2	180928464	180928465	rs12613500	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.3		rs12613500-C	0.4238	5E-12		0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1965	chr2	180941170	180941171	rs62180970	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q31.3	Intergenic	rs62180970-A	0.8076	5E-9	(MTAG)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1965	chr2	180975855	180975856	rs6750081	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.3		rs6750081-A	0.3545	6E-11	(conditional-joint)	0.0096	[0.0067-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1965	chr2	180994470	180994471	rs62181012	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q31.3	NR	rs62181012-T	NR	2E-9		6.022	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1965	chr2	180997572	180997573	rs59262126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q31.3	Intergenic	rs59262126-A	0.6996	2E-9	(MTAG)	0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1966	chr2	181024867	181024868	rs4893897	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Middle temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q31.3	NR	rs4893897-?		4E-6				Illumina [4322238] (imputed)	N
1966	chr2	181027170	181027171	rs6706467	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q31.3	NR	rs6706467-A	0.087	3E-6	(IFNalpha_ABC_of_CD4p_T)			Illumina [5084123] (imputed)	N
1966	chr2	181076748	181076749	rs13418455	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q31.3	intergenic	rs13418455-T		1E-6	(Modelling analysis)	1.06	[1.04-1.09]	NR [1252901] (imputed)	N
1966	chr2	181111078	181111079	rs114783541	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q31.3	RP11-512G4.1	rs114783541-A	0.9915	7E-6		0.1626	[0.091-0.234] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1967	chr2	181229625	181229626	rs16867300	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q31.3		rs16867300-T	0.101951	1E-10		0.02374431	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1967	chr2	181243150	181243151	rs150489241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q31.3	NR	rs150489241-G	0.899056	1E-10		0.020466	[0.014-0.027] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1968	chr2	181320820	181320821	rs6433847	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.3	NR	rs6433847-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1968	chr2	181323159	181323160	rs10174253	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q31.3	CWC22	rs10174253-A	0.718219	3E-13		0.011209	[0.0082-0.0142] unit decrease	Affymetrix [12370749]	N
1968	chr2	181362378	181362379	rs16867321	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	2q31.3	UBE2E3	rs16867321-?	NR	2E-6	(obesity)			Illumina [~ 550000]	N
1968	chr2	181366250	181366251	rs1840108	25387707	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of antisaccade eye tracking error rate: a genome-wide association study.	Anti-saccade response	4,469 European ancestry twins and their parents	NA	2q31.3	intergenic	rs1840108-?	NR	6E-6		0.04	[0.022-0.058] unit increase	Illumina [527829]	N
1968	chr2	181371843	181371844	rs749526610	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2q31.3	RP11-512G4.1	rs749526610-A	0.9987	2E-8		2.0083	[1.3-2.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1968	chr2	181371843	181371844	rs749526610	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q31.3	RP11-512G4.1	rs749526610-A	0.9987	1E-7		1.8629	[1.17-2.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1968	chr2	181371843	181371844	rs749526610	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q31.3	RP11-512G4.1	rs749526610-A	0.9987	1E-7		1.8629	[1.17-2.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1968	chr2	181391272	181391273	rs79785281	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.3	NR	rs79785281-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1969	chr2	181458933	181458934	rs16867335	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in rectal cancer	171 European ancestry cases	NA	2q31.3	intergenic	rs16867335-?		4E-6	(overall survival)	3.27	[1.98-5.42]	Illumina [729737]	N
1969	chr2	181462034	181462035	rs1528439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q31.3	Intergenic	rs1528439-T	0.2587	8E-9		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1969	chr2	181470190	181470191	rs147710719	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q31.3	NR	rs147710719-C	NR	2E-6	(GEE model)	1.0539	[0.62-1.49] unit decrease	NR [NR] (imputed)	N
1969	chr2	181501937	181501938	rs2368178	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.3	NR	rs2368178-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
1969	chr2	181513728	181513729	rs918959	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q31.3	intergenic	rs918959-?	0.91	2E-6	(anti-dsDNA -)	1.72	[1.39-2.17]	Illumina [421318] (imputed)	N
1969	chr2	181517641	181517642	rs1528450	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2q31.3		rs1528450-C	0.714168	1E-8		0.0203493	[0.013-0.027] unit increase	Illumina [13479178] (imputed)	N
1969	chr2	181517995	181517996	rs6433857	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q31.3	CWC22, SCHLAP1	rs6433857-T	0.315	5E-8	(Japanese)	0.021	[0.013-0.029] unit decrease	Illumina [6108953] (imputed)	N
1969	chr2	181518007	181518008	rs1528451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q31.3		rs1528451-C	0.688597	2E-9		0.0176015	[0.012-0.023] unit increase	Illumina [13479924] (imputed)	N
1969	chr2	181518007	181518008	rs1528451	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.3	KIAA1604	rs1528451-?	NR	5E-6	(TAG 46:0)	0.1898916	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1970	chr2	181550961	181550962	rs1528435	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q31.3	CWC22, SCHLAP1	rs1528435-T	0.6	2E-13		0.018	[0.014-0.022] unit increase	Illumina [6108953] (imputed)	N
1970	chr2	181550961	181550962	rs1528435	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q31.3	UBE2E3	rs1528435-T	0.632	4E-8	(EA, men)	0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1970	chr2	181550961	181550962	rs1528435	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q31.3	UBE2E3	rs1528435-T	0.631	5E-9		0.018	[0.012-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1970	chr2	181550961	181550962	rs1528435	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q31.3	UBE2E3	rs1528435-T	0.631	1E-8	(EA)	0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1970	chr2	181567191	181567192	rs12467798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q31.3		rs12467798-A	NR	5E-20		0.016	[0.013-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1970	chr2	181570506	181570507	rs12479357	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q31.3		rs12479357-G	NR	2E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1970	chr2	181575280	181575281	rs7588437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q31.3	NA	rs7588437-A	0.3664	2E-22		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1970	chr2	181575280	181575281	rs7588437	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q31.3	NA	rs7588437-A	0.3664	2E-22		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1970	chr2	181575280	181575281	rs7588437	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q31.3	NR	rs7588437-A	0.352642513380939	2E-11		0.019029135	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1970	chr2	181586725	181586726	rs13029379	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	2q31.3	SCHLAP1	rs13029379-?	NR	2E-6			NR	Illumina [up to 317503]	N
1970	chr2	181586725	181586726	rs13029379	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	2q31.3	SCHLAP1	rs13029379-?	NR	1E-6			NR	Illumina [up to 317503]	N
1970	chr2	181602525	181602526	rs1019612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q31.3		rs1019612-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1970	chr2	181602525	181602526	rs1019612	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q31.3	NA	rs1019612-T	0.6639	1E-21		0.0172	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
1970	chr2	181606894	181606895	rs11679338	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q31.3	NR	rs11679338-C	0.3381	4E-11		0.017247647	[0.012-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1970	chr2	181606894	181606895	rs11679338	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q31.3	NR	rs11679338-C	NR	2E-11		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1970	chr2	181607675	181607676	rs9630985	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.3	NR	rs9630985-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
1970	chr2	181607750	181607751	rs9630986	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q31.3	NA	rs9630986-C	0.6685	1E-10		0.0122	[0.0085-0.0159] unit increase	NR [~ 27400000] (imputed)	N
1970	chr2	181614912	181614913	rs17667540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q31.3		rs17667540-A	0.3053	1E-8		0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1970	chr2	181614912	181614913	rs17667540	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q31.3	Intergenic	rs17667540-A	0.3053	4E-10	(MTAG)	0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1970	chr2	181618653	181618654	rs6741676	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q31.3	NR	rs6741676-G	0.3321	4E-11		0.0324	[0.023-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1970	chr2	181618653	181618654	rs6741676	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q31.3	NR	rs6741676-G	0.3067	7E-15		0.0324	[0.024-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1970	chr2	181662421	181662422	rs55750009	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q31.3		rs55750009-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1971	chr2	181677802	181677803	rs10432489	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q31.3	UBE2E3	rs10432489-A	0.75	6E-7		1.32	[0.79-1.85] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
1971	chr2	181719391	181719392	rs60588889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q31.3		rs60588889-C	0.9751657	7E-10		0.051505387	[0.035-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1971	chr2	181727328	181727329	rs12623166	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q31.3		rs12623166-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1971	chr2	181727328	181727329	rs12623166	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs12623166-G	0.905	9E-10				Affymetrix [10369434] (imputed)	N
1972	chr2	181832866	181832867	rs4666988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q31.3		rs4666988-T	NR	2E-14		0.0139	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1972	chr2	181832866	181832867	rs4666988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q31.3		rs4666988-T	NR	1E-8		0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1972	chr2	181847404	181847405	rs4299301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q31.3		rs4299301-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1972	chr2	181853176	181853177	rs4563182	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q31.3		rs4563182-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1972	chr2	181855002	181855003	rs4666992	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q31.3	NR	rs4666992-G	0.291744	8E-13		0.014941	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1972	chr2	181882741	181882742	rs4414647	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q31.3	UBE2E3	rs4414647-A	0.613463	2E-16		0.00198514	[0.0015-0.0025] unit decrease	Affymetrix [13995440] (imputed)	N
1972	chr2	181882878	181882879	rs10167839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q31.3		rs10167839-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1972	chr2	181883792	181883793	rs2030242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q31.3		rs2030242-T	NR	4E-11		0.0135	[0.0096-0.0174] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1972	chr2	181885294	181885295	rs7575113	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q31.3		rs7575113-?	NR	1E-20				NR [~ 8900000] (imputed)	N
1972	chr2	181889061	181889062	rs4362519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q31.3	NR	rs4362519-C	0.338049	4E-10		0.012242	[0.0084-0.0161] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1972	chr2	181889061	181889062	rs4362519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q31.3	NR	rs4362519-C	0.338251	2E-12		0.013838	[0.01-0.0177] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1972	chr2	181895720	181895721	rs116100230	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q31.3		rs116100230-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1972	chr2	181899323	181899324	rs62181560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q31.3	UBE2E3	rs62181560-G	0.2908	2E-16		0.019916875	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1972	chr2	181899324	181899325	rs10930948	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q31.3	UBE2E3	rs10930948-A	0.718445	2E-9		0.015632559	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1972	chr2	181907724	181907725	rs6745190	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs6745190-A	0.726	1E-21				Affymetrix [10369434] (imputed)	N
1972	chr2	181907724	181907725	rs6745190	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q31.3	UBE2E3	rs6745190-G	0.2755	8E-11		0.02629854	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1972	chr2	181918895	181918896	rs7562697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q31.3	UBE2E3	rs7562697-G	0.684614	3E-9		0.014151831	[0.0095-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
1972	chr2	181920761	181920762	rs78590213	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs78590213-G	0.260304	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
1972	chr2	181920762	181920763	rs79719017	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q31.3	UBE2E3	rs79719017-T	0.7009	4E-8		0.015497868	[0.01-0.021] unit increase	Affymetrix [~ 11515000] (imputed)	N
1972	chr2	181920762	181920763	rs79719017	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q31.3	UBE2E3	rs79719017-T	0.69995	3E-25		0.020724	[0.017-0.025] unit decrease	NR [13737936] (imputed)	N
1973	chr2	181930056	181930057	rs62178782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q31.3	UBE2E3	rs62178782-A	0.279591	2E-10		0.0154365	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1973	chr2	181930056	181930057	rs62178782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q31.3	UBE2E3	rs62178782-A	0.27961	1E-9		0.01527744	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1973	chr2	181940641	181940642	rs10191559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q31.3	NR	rs10191559-A	0.702311	7E-22		0.019427	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1973	chr2	181940641	181940642	rs10191559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q31.3		rs10191559-?	NR	9E-32				NR [~ 8900000] (imputed)	N
1973	chr2	181940641	181940642	rs10191559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q31.3	UBE2E3	rs10191559-A	0.6988	4E-10		0.02426728	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1973	chr2	181946114	181946115	rs10184839	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q31.3	AC068196.1	rs10184839-A	0.2917	2E-13		0.1398	[0.1-0.18] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1973	chr2	181957492	181957493	rs6731985	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q31.3	UBE2E3, ITGA4	rs6731985-A	0.67	3E-11		6.63	z-score increase	Affymetrix [4311822] (imputed)	N
1973	chr2	181962620	181962621	rs10205700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs10205700-G	0.654429	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
1973	chr2	181967074	181967075	rs2368196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q31.3		rs2368196-A	NR	7E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1973	chr2	181967074	181967075	rs2368196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs2368196-A	0.653618	7E-21				Affymetrix, Illumina [24332387] (imputed)	N
1973	chr2	181969708	181969709	rs6433891	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q31.3		rs6433891-G	0.299	1E-8		0.07	[0.05-0.09] % increase	Affymetrix [NR] (imputed)	N
1973	chr2	181971236	181971237	rs6433892	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q31.3	UBE2E3	rs6433892-A	NR	1E-6		1.0689	NR	Affymetrix, Illumina [8278136] (imputed)	N
1973	chr2	181971799	181971800	rs6706397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	2q31.3		rs6706397-T	0.689	3E-11				Affymetrix [10369434] (imputed)	N
1973	chr2	181971799	181971800	rs6706397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q31.3		rs6706397-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1973	chr2	181974257	181974261	rs376644292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q31.3		rs376644292-C	NR	8E-67		0.0421	[0.037-0.047] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1973	chr2	181980068	181980069	rs55664819	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2q31.3		rs55664819-T	0.684	7E-23				Affymetrix [10369434] (imputed)	N
1973	chr2	181985764	181985765	rs13011751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	2q31.3	UBE2E3, LOC101927156	rs13011751-?	NR	3E-8		0.04986	[0.032-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1973	chr2	181987552	181987553	rs13020845	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	2q31.3	NR	rs13020845-G	0.892034	1E-10		0.048879	[0.034-0.064] SD units increase	Affymetrix, Illumina [16289068] (imputed)	N
1973	chr2	181996044	181996045	rs13010713	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q31.3	ITGA4, UBE2E3	rs13010713-G	0.45	5E-11		1.13	[1.09-1.18]	Illumina [292387]	N
1973	chr2	182007799	182007800	rs1018326	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2q31.3	UBE2E3, ITGA4	rs1018326-C	0.418	3E-16		1.16		Illumina [139553]	N
1973	chr2	182007799	182007800	rs1018326	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	2q31.3	NR	rs1018326-C	0.45	2E-6		1.24	[1.15-1.33]	Illumina [288662]	N
1973	chr2	182010026	182010027	rs11891215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q31.3		rs11891215-A	0.684	6E-43				Affymetrix [10369434] (imputed)	N
1973	chr2	182010026	182010027	rs11891215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q31.3	AC104820.2	rs11891215-G	0.31599	6E-86		0.046838	[0.042-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
1973	chr2	182012013	182012014	rs6433895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	2q31.3		rs6433895-C	0.149873	1E-11		0.0419284	[0.03-0.054] unit decrease	Illumina [13471431] (imputed)	N
1973	chr2	182012013	182012014	rs6433895	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs6433895-C	0.298013	1E-127				Affymetrix, Illumina [23472807] (imputed)	N
1973	chr2	182012013	182012014	rs6433895	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q31.3	AC104820.2	rs6433895-C	0.3223	3E-36		0.04854904	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1973	chr2	182016756	182016757	rs13033467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q31.3	AC104820.2	rs13033467-G	0.313836	1E-44		0.033432394	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1973	chr2	182017629	182017630	rs55954384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q31.3	AC104820.2	rs55954384-G	0.314614	1E-23		0.023926092	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1973	chr2	182020695	182020696	rs59395276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q31.3	AC104820.2	rs59395276-C	0.3209	2E-11		0.02567474	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1973	chr2	182020695	182020696	rs59395276	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q31.3	AC104820.2	rs59395276-C	0.3209	2E-17		0.03262949	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1973	chr2	182027602	182027603	rs6750529	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q31.3	NR	rs6750529-T	0.744	2E-15		0.00984464	[0.0074-0.0123] unit increase	NR [9732723] (imputed)	N
1973	chr2	182027602	182027603	rs6750529	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q31.3	NR	rs6750529-T	0.744	9E-12		0.019907357	[0.014-0.026] unit increase	NR [~ 10000000] (imputed)	N
1973	chr2	182039861	182039862	rs4667117	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q31.3	AC104820.2	rs4667117-T	0.660711	1E-9		0.019825803	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1973	chr2	182044496	182044497	rs4233789	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q31.3		rs4233789-T	0.252	1E-16		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
1973	chr2	182044496	182044497	rs4233789	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q31.3	NR	rs4233789-A	0.757	2E-8		0.0100302	[0.0065-0.0135] unit increase	NR [9732723] (imputed)	N
1973	chr2	182048451	182048452	rs12615545	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q31.3	UBE2E3	rs12615545-C	0.421	2E-7	(EA)	1.11		Illumina [128935]	N
1973	chr2	182048451	182048452	rs12615545	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q31.3	UBE2E3	rs12615545-C	0.421	1E-9		1.12		Illumina [128935]	N
1973	chr2	182056978	182056979	rs34700861	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	2q31.3	UBE2E3	rs34700861-T	0.2228	4E-9		0.016754711	[0.011-0.022] unit increase	Affymetrix [11515109] (imputed)	N
1973	chr2	182057639	182057640	rs12619531	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q31.3	LINC01934	rs12619531-G		4E-19		1.175986		Illumina [252970]	N
1973	chr2	182057639	182057640	rs12619531	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q31.3	ITGA4	rs12619531-G	NA	1E-18				Illumina [252970]	N
1974	chr2	182067422	182067423	rs6433901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q31.3		rs6433901-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1974	chr2	182069078	182069079	rs4432412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q31.3	AC104820.2	rs4432412-C	0.326367	4E-23		0.023649216	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1974	chr2	182072325	182072326	rs139557015	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	2q31.3	MIR4437	rs139557015-T	0.964846	2E-8		0.048959	[0.032-0.066] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1974	chr2	182073741	182073742	rs4473348	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q31.3		rs4473348-A	0.25	6E-11		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1974	chr2	182073997	182073998	rs6713632	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q31.3		rs6713632-T	0.674	4E-32				Affymetrix [10369434] (imputed)	N
1974	chr2	182077534	182077535	rs11684463	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q31.3	NR	rs11684463-T	0.327486	1E-121		0.04727	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1974	chr2	182102970	182102971	rs10180754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q31.3		rs10180754-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1974	chr2	182109513	182109515	rs1352859243	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	2q31.3		rs1352859243-C	0.02632	2E-7		0.1628		Illumina [7608150]	N
1974	chr2	182111205	182111206	rs16867384	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2q31.3	UBE2E3, MIR4437	rs16867384-?	NR	6E-9		1.1		Illumina [109572]	N
1974	chr2	182127662	182127663	rs13413665	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q31.3	MIR4437	rs13413665-T	0.98	3E-6		3.36	[1.95-4.77] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1974	chr2	182149941	182149942	rs13390610	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q31.3	AC104820.2	rs13390610-T	0.4244	8E-12		0.02475417	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1974	chr2	182151507	182151508	rs2119148	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q31.3	LOC101927156	rs2119148-A	0.575586629	7E-6		1.0550008	[1.03-1.08]	Illumina [10439017] (imputed)	N
1974	chr2	182155930	182155931	rs56118925	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q31.3		rs56118925-?	NR	6E-9		0.0126183	[0.0084-0.0168] unit decrease	Affymetrix [20259828] (imputed)	N
1974	chr2	182157838	182157839	rs6760805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q31.3	AC104820.2	rs6760805-G	0.3885	5E-58		0.050916217	[0.045-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1974	chr2	182157838	182157839	rs6760805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q31.3	AC104820.2	rs6760805-G	0.3763	2E-31		0.04344131	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1974	chr2	182159054	182159055	rs62180237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q31.3	AC104820.2	rs62180237-T	0.415609	5E-14		0.016935145	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1974	chr2	182159434	182159435	rs12623524	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q31.3	AC104820.2	rs12623524-C	0.422177	2E-34		0.027456295	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1974	chr2	182173881	182173882	rs112150239	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q31.3		rs112150239-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1974	chr2	182174582	182174583	rs116387149	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q31.3		rs116387149-A	0.973	2E-9				Affymetrix [10369434] (imputed)	N
1974	chr2	182188375	182188376	rs62180254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q31.3		rs62180254-G	0.63	4E-24				Affymetrix [10369434] (imputed)	N
1974	chr2	182188375	182188376	rs62180254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	2q31.3		rs62180254-G	0.63	4E-21				Affymetrix [10369434] (imputed)	N
1974	chr2	182188375	182188376	rs62180254	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q31.3		rs62180254-G	0.63	1E-36				Affymetrix [10369434] (imputed)	N
1974	chr2	182189549	182189550	rs1371619	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q31.3	AC104820.2	rs1371619-C	0.367387	1E-15		0.018732017	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1975	chr2	182213034	182213035	rs13428910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q31.3		rs13428910-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1975	chr2	182235091	182235092	rs6716355	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2q31.3	MIR4437, ITGA4	rs6716355-C	0.31	2E-6		1.06	[1.04-1.09]	Illumina [161311]	N
1975	chr2	182246872	182246873	rs13029040	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	2q31.3	UBE2E3, ITGA4	rs13029040-T	0.087	5E-6		0.098	[0.055-0.141] unit increase	Illumina [5299861] (imputed)	N
1975	chr2	182249767	182249768	rs56144959	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs56144959-G	0.895	1E-26				Affymetrix [10369434] (imputed)	N
1975	chr2	182252253	182252254	rs67712940	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs67712940-C	0.668	5E-31				Affymetrix [10369434] (imputed)	N
1975	chr2	182257368	182257369	rs11690881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q31.3	AC104820.2	rs11690881-C	0.318877	2E-11		0.016779806	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1975	chr2	182258149	182258150	rs12693275	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q31.3	CERKL	rs12693275-?	NR	6E-6	(SM 22:0)	0.17898124	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1975	chr2	182260251	182260252	rs7602799	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q31.3	ITGA4	rs7602799-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
1975	chr2	182261868	182261869	rs7602460	21041692	Denny JC	2010-11-01	Circulation	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	2q31.3	intergenic	rs7602460-A	0.40	6E-6		2.42	[1.36-3.48] ms decrease	Illumina [514999]	N
1975	chr2	182263950	182263951	rs831864	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q31.3		rs831864-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1975	chr2	182263950	182263951	rs831864	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs831864-T	0.102	8E-18				Affymetrix [10369434] (imputed)	N
1975	chr2	182271042	182271043	rs113142635	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q31.3	Intergenic	rs113142635-C	0.991	5E-6	(AA)	0.165	NR unit increase	Illumina [NR] (imputed)	N
1975	chr2	182281568	182281569	rs115583150	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs115583150-T	0.932	1E-13				Affymetrix [10369434] (imputed)	N
1975	chr2	182285104	182285105	rs112377817	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q31.3	Intergenic	rs112377817-G	0.992	2E-6	(AA)	0.184	NR unit increase	Illumina [NR] (imputed)	N
1975	chr2	182286610	182286611	rs1006786441	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	121 European ancestry cases, 126,333 European ancestry controls, 155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	2q31.3		rs1006786441-T	NR	3E-10		6.87	[4.74-9] unit increase	Illumina [23539365] (imputed)	N
1975	chr2	182301048	182301049	rs155133	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q31.3		rs155133-G	0.652	8E-11				Affymetrix [10369434] (imputed)	N
1975	chr2	182301048	182301049	rs155133	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q31.3		rs155133-G	0.652	1E-15				Affymetrix [10369434] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q31.3	NR	rs6740847-G	0.562056	4E-29		0.021748	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2q31.3	LOC101927156, ITGA4	rs6740847-?	NR	3E-8		0.02504	[0.016-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	2q31.3	ITGA4	rs6740847-?		1E-6				Illumina [9578670] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q31.3	ITGA4	rs6740847-A	0.508	1E-13		1.1	1.07-1.12	Illumina [9725440] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q31.3	ITGA4	rs6740847-?		1E-10				Illumina [9560910] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5634	4E-25		0.03747913	[0.03-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5638	9E-13		0.02590063	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5637	5E-12		0.02505486	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5637	5E-12		0.0250503	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5637	1E-27		0.03962417	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308351	182308352	rs6740847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q31.3	intergenic	rs6740847-G	0.5637	1E-12		0.02584311	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1975	chr2	182308835	182308836	rs6731125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q31.3		rs6731125-C	NR	7E-13		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1975	chr2	182308835	182308836	rs6731125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q31.3		rs6731125-C	0.564699	6E-16		0.018054893	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1975	chr2	182308835	182308836	rs6731125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q31.3	NR	rs6731125-C	0.563733	3E-992		0.1272	[0.12-0.13] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1975	chr2	182308835	182308836	rs6731125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs6731125-C	0.53229	6E-19				Affymetrix, Illumina [19872809] (imputed)	N
1975	chr2	182308835	182308836	rs6731125	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q31.3	NR	rs6731125-C	0.564761	1E-17		0.017166	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1975	chr2	182311593	182311594	rs13384671	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	2q31.3	NR	rs13384671-A	0.69	9E-9		0.9	[NR]	NR [8546065] (imputed)	N
1975	chr2	182312271	182312272	rs155123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q31.3		rs155123-A	0.597029	1E-16		0.018872647	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1975	chr2	182312808	182312809	rs4667282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q31.3		rs4667282-A	0.561203	7E-12		0.015415171	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1975	chr2	182312808	182312809	rs4667282	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	2q31.3	NR	rs4667282-T	0.625787	5E-13		0.02735	[0.02-0.035] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1975	chr2	182313245	182313246	rs4667283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q31.3		rs4667283-T	NR	1E-42		0.0272	[0.023-0.031] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1975	chr2	182313245	182313246	rs4667283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q31.3		rs4667283-T	0.371808	5E-9		0.0205703	[0.014-0.027] unit increase	Illumina [13479091] (imputed)	N
1975	chr2	182313245	182313246	rs4667283	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q31.3		rs4667283-T	NR	3E-20		0.0198	[0.016-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1975	chr2	182313245	182313246	rs4667283	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	27,236 European ancestry individuals	NA	2q31.3		rs4667283-T	0.4494	4E-6		0.0601	[0.035-0.086] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1975	chr2	182313245	182313246	rs4667283	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	16,201 African American or Afro-Caribbean individuals	NA	2q31.3		rs4667283-T	0.43	6E-12		0.1093	[0.078-0.14] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1975	chr2	182315884	182315885	rs7573465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs7573465-T	0.517669	6E-93				Affymetrix, Illumina [24649327] (imputed)	N
1975	chr2	182315884	182315885	rs7573465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q31.3	NR	rs7573465-T	0.554185	5E-83		0.035796	[0.032-0.039] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1975	chr2	182316246	182316247	rs147084229	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q31.3	NR	rs147084229-?	NR	8E-7	(EA)	0.7441	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q31.3		rs1449263-C	0.443	3E-25				Affymetrix [10369434] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q31.3	ITGA4	rs1449263-T	0.556624	3E-10		0.014232335	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	2q31.3	NR	rs1449263-C	0.626424	6E-87		0.096804	[0.087-0.106] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q31.3	NR	rs1449263-T	0.556421	5E-14		0.015569	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q31.3		rs1449263-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	2q31.3	LOC101927156, ITGA4	rs1449263-?	NR	8E-63		0.098	[0.087-0.109] unit increase novel	Illumina [6108953] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	2q31.3	ITGA4	rs1449263-C	0.626	8E-8	(Japanese)	0.033	[0.021-0.045] unit decrease	Illumina [NR] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	2q31.3	ITGA4	rs1449263-C	0.541	7E-14	(EA)	0.036	[0.026-0.046] unit decrease	Illumina [NR] (imputed)	N
1975	chr2	182319300	182319301	rs1449263	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	2q31.3	CERKL, ITGA4	rs1449263-T		3E-23	(Monocytes)	0.0363	[0.029-0.044] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
1976	chr2	182323664	182323665	rs12988934	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	2q31.3	ITGA4	rs12988934-T	0.27	2E-14	(monocyte count)	0.109	[0.08-0.14] unit increase	Illumina [2178645] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs1375493-G	0.443	3E-301				Affymetrix [10369434] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs1375493-G	0.443	7E-253				Affymetrix [10369434] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD14+ CD16- monocyte Absolute Count	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q31.3		rs1375493-A	0.37788	1E-9		0.1517	[0.1-0.2] unit increase	Illumina [18224179] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q31.3	ITGA4	rs1375493-A	0.556649	5E-27		0.024073826	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs1375493-A	0.533263	5E-32				Affymetrix, Illumina [23114412] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	7,543 Hispanic or Latin American individuals	NA	2q31.3	NR	rs1375493-G	0.444398	2E-12		0.116955	[0.085-0.149] SD units decrease	Affymetrix, Illumina [25652698] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q31.3		rs1375493-?	NR	4E-58				NR [~ 8900000] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q31.3	ITGA4	rs1375493-A	0.5564	1E-10		0.02315471	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182323765	182323766	rs1375493	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	2q31.3	NR	rs1375493-?	NR	2E-15		0.0192	[0.014-0.024] unit increase	Illumina [NR] (imputed)	N
1976	chr2	182324042	182324042	rs35723031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q31.3	ITGA4	rs35723031-GT	0.556464	3E-24		0.022680853	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q31.3		rs10562650-C	NR	4E-619		0.1106	[0.11-0.11] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q31.3	ITGA4	rs10562650-C	0.555296	4E-47		0.032478932	[0.028-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q31.3	ITGA4	rs10562650-C	0.555318	2E-601		0.11787862	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q31.3	ITGA4	rs10562650-CTT	0.444704	3E-751		0.13147534	[0.13-0.14] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q31.3	ITGA4	rs10562650-C	0.5555	1E-222		0.1143897	[0.11-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q31.3	ITGA4	rs10562650-C	0.5556	6E-281		0.1288849	[0.12-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182324186	182324188	rs10562650	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q31.3	ITGA4	rs10562650-C	0.5557	2E-151		0.09442227	[0.087-0.101] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182324187	182324188	rs201013030	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	2q31.3	ITGA4	rs201013030-T	0.447	8E-20		0.0132	[0.01-0.016] unit decrease	Illumina [27887661] (imputed)	N
1976	chr2	182327956	182327957	rs10930969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	2q31.3	NR	rs10930969-G	0.767687	6E-11		0.038975	[0.027-0.051] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
1976	chr2	182327956	182327957	rs10930969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs10930969-A	0.187186	2E-15				Affymetrix, Illumina [19905671] (imputed)	N
1976	chr2	182328213	182328214	rs2124440	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	2q31.3		rs2124440-A	0.4431	9E-26		0.1239	[0.1-0.15] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1976	chr2	182328213	182328214	rs2124440	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte count	5,892 Dutch ancestry individuals	NA	2q31.3	ITGA4	rs2124440-?	NR	2E-7				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1976	chr2	182328213	182328214	rs2124440	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	2q31.3	NR	rs2124440-G	0.45	2E-18		0.02	[0.016-0.024] unit decrease	Illumina [27887661] (imputed)	N
1976	chr2	182328213	182328214	rs2124440	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	2q31.3	ITGA4	rs2124440-G	0.45	5E-17		0.22	[NR] unit decrease	Illumina [NR]	N
1976	chr2	182329459	182329460	rs3770136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	2q31.3		rs3770136-T	0.229325	3E-9		0.0318787	[0.021-0.042] unit decrease	Illumina [13469940] (imputed)	N
1976	chr2	182329459	182329460	rs3770136	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	2q31.3	ITGA4	rs3770136-?	NR	4E-8		0.03723	[0.024-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
1976	chr2	182329618	182329619	rs10209150	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	2q31.3	ITGA4	rs10209150-G	0.9795	6E-6	(Ordinal II)	0.591	[0.34-0.85] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1976	chr2	182329646	182329647	rs155149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q31.3	NR	rs155149-G	0.757455	1E-409				Affymetrix, Illumina [23467995] (imputed)	N
1976	chr2	182331979	182331980	rs116551300	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs116551300-A	0.969	2E-13				Affymetrix [10369434] (imputed)	N
1976	chr2	182331979	182331980	rs116551300	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs116551300-A	0.969	9E-34				Affymetrix [10369434] (imputed)	N
1976	chr2	182332145	182332146	rs155147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs155147-G	0.966	2E-28				Affymetrix [10369434] (imputed)	N
1976	chr2	182332145	182332146	rs155147	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs155147-G	0.966	9E-19				Affymetrix [10369434] (imputed)	N
1976	chr2	182334683	182334684	rs13029144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q31.3	ITGA4	rs13029144-T	0.566379	9E-17		0.018981101	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182334683	182334684	rs13029144	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	2q31.3	NR	rs13029144-C	0.421759	4E-25		0.130382	[0.11-0.16] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1976	chr2	182334752	182334753	rs13029501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q31.3		rs13029501-T	0.371741	7E-88		0.091324	[0.082-0.1] unit increase	Illumina [13471440] (imputed)	N
1976	chr2	182334752	182334753	rs13029501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	7,043 South Asian ancestry individuals	NA	2q31.3	NR	rs13029501-G	0.397279	2E-17		0.140212	[0.11-0.17] SD units decrease	Affymetrix, Illumina [28465834] (imputed)	N
1976	chr2	182342395	182342396	rs138263114	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q31.3	ITGA4	rs138263114-G	0.995	5E-6	(AA)	0.191	NR unit increase	Illumina [NR] (imputed)	N
1976	chr2	182349062	182349063	rs80085646	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	2q31.3		rs80085646-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1976	chr2	182349408	182349409	rs3755021	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte-lymphocyte ratio	5,892 Dutch ancestry individuals	NA	2q31.3	ITGA4	rs3755021-T	NR	2E-8		0.0119024	[0.0077-0.0161] unit decrease	Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1976	chr2	182350488	182350489	rs17290693	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte count	5,892 Dutch ancestry individuals	NA	2q31.3	NR	rs17290693-?	NR	5E-6				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1976	chr2	182352012	182352013	rs76053290	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs76053290-C	0.974	1E-14				Affymetrix [10369434] (imputed)	N
1976	chr2	182352981	182352982	rs115713449	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs115713449-T	0.939	2E-17				Affymetrix [10369434] (imputed)	N
1976	chr2	182359591	182359592	rs16867434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs16867434-T	0.911	2E-10				Affymetrix [10369434] (imputed)	N
1976	chr2	182359591	182359592	rs16867434	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs16867434-T	0.911	7E-18				Affymetrix [10369434] (imputed)	N
1976	chr2	182373429	182373433	rs148495678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q31.3	ITGA4	rs148495678-A	0.3236	4E-10		0.02404632	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182374625	182374626	rs56332230	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q31.3		rs56332230-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1976	chr2	182385914	182385915	rs62191452	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs62191452-G	0.903	3E-37				Affymetrix [10369434] (imputed)	N
1976	chr2	182394144	182394145	rs3770104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q31.3	ITGA4	rs3770104-T	0.669643	6E-9		0.013839016	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q31.3	ITGA4	rs1143676-A	0.669262	9E-17		0.01954644	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q31.3	ITGA4	rs1143676-G	0.330733	2E-23		0.02337195	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q31.3	ITGA4	rs1143676-A	0.66925	1E-59		0.03883084	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q31.3	ITGA4	rs1143676-A	0.669215	5E-30		0.026889522	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q31.3	ITGA4	rs1143676-A	0.669231	1E-28		0.026267188	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182395344	182395345	rs1143676	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2q31.3	ITGA4	rs1143676-A	0.6689	1E-31		0.04405682	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182396031	182396032	rs6433921	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q31.3	ITGA4	rs6433921-G	0.6699	3E-13		0.02785669	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182396031	182396032	rs6433921	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q31.3	ITGA4	rs6433921-G	0.6699	1E-12		0.02731478	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1976	chr2	182396874	182396875	rs1839266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q31.3	ITGA4	rs1839266-G	0.670391	2E-12		0.016653238	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182397941	182397942	rs6748657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q31.3	ITGA4	rs6748657-A	0.558924	1E-11		0.015222891	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182397941	182397942	rs6748657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q31.3	ITGA4	rs6748657-A	0.558938	1E-10		0.014408253	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1976	chr2	182411708	182411709	rs115613255	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs115613255-T	0.884	2E-12				Affymetrix [10369434] (imputed)	N
1976	chr2	182421738	182421739	rs189637610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q31.3	CERKL	rs189637610-C	0.193137	3E-11		0.01920988	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1976	chr2	182422159	182422160	rs4666788	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q31.3		rs4666788-G	0.899	2E-12				Affymetrix [10369434] (imputed)	N
1976	chr2	182446054	182446055	rs72885327	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q31.3		rs72885327-G	0.884	1E-18				Affymetrix [10369434] (imputed)	N
1977	chr2	182455993	182455994	rs993648	18521091	Volpi S	2008-06-03	Mol Psychiatry	Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia.	Response to iloperidone treatment (QT prolongation)	91 African American Schizophrenia cases, 69 European ancestry Schizophrenia cases, 16 Asian ancestry Schizophrenia cases, 7 Schizophrenia cases	NA	2q31.3	CERKL	rs993648-T	NR	3E-6				Affymetrix [339272]	N
1977	chr2	182500073	182500074	rs112068538	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	2q31.3	NR	rs112068538-?	NR	8E-6		2.0782	[1.36-2.79] unit decrease	Illumina [at least 560000] (imputed)	N
1977	chr2	182502437	182502438	rs13392054	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale and revised social anhedonia scale)	3,868 Finnish ancestry individuals	NA	2q31.3	CERKL	rs13392054-?		4E-6				Illumina [~ 9600000] (imputed)	N
1977	chr2	182511855	182511856	rs1441147	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	2q31.3	NR	rs1441147-?		9E-6	(AA)			Illumina [up to 524000]	N
1977	chr2	182511855	182511856	rs1441147	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	2q31.3	NR	rs1441147-?		3E-6	(AA)			Illumina [up to 524000]	N
1977	chr2	182543259	182543260	rs763092306	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria (moderate to severe)	6,109 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q31.3	NEUROD1	rs763092306-T	1.2E-4	1E-10		23.741	[9.04-62.36]	Illumina [32500000] (imputed)	N
1977	chr2	182543259	182543260	rs763092306	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Glucosuria	10,857 Icelandic ancestry cases, 135,512 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q31.3	NEUROD1	rs763092306-T	1.2E-4	6E-10		16.155	[6.71-39.10]	Illumina [32500000] (imputed)	N
1978	chr2	182584020	182584021	rs11904490	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q31.3		rs11904490-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1978	chr2	182653724	182653725	rs7575118	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q31.3	NR	rs7575118-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1978	chr2	182653724	182653725	rs7575118	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q31.3	NA	rs7575118-T	0.1561	3E-9		0.014	[0.0093-0.0187] unit increase	NR [~ 27400000] (imputed)	N
1978	chr2	182665228	182665229	rs111904787	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q31.3	NR	rs111904787-?	NR	3E-6		0.188844	[0.11-0.27] unit decrease	NR [13958389] (imputed)	N
1979	chr2	182736266	182736267	rs78797265	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	2q31.3	intergenic	rs78797265-T	0.012	6E-7		6.925	[3.232-14.84]	Illumina [7585874] (imputed)	N
1979	chr2	182743245	182743246	rs7592216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q31.3		rs7592216-T	NR	9E-9		0.0206	[0.014-0.028] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1980	chr2	182893412	182893413	rs1209623	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	2q31.3	NR	rs1209623-T	0.05786	5E-6		1.116	[0.49-1.74] unit increase	Illumina [at least 567677] (imputed)	N
1980	chr2	182918172	182918173	rs530516631	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q31.3	PPP1R1C	rs530516631-A	0.9859	7E-6		0.5366	[0.3-0.77] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1981	chr2	182994684	182994685	rs12474446	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q32.1	PPP1R1C	rs12474446-A	0.2117	5E-17		0.2755	[0.21-0.34] mmHg decrease	Affymetrix [NR] (imputed)	N
1981	chr2	182995472	182995473	rs10197864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q32.1		rs10197864-C	NR	8E-12		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1981	chr2	182996187	182996188	rs6732308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q32.1		rs6732308-G	NR	3E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1981	chr2	182996187	182996188	rs6732308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q32.1		rs6732308-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1981	chr2	183003886	183003887	rs10197337	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q32.1	PDE1A	rs10197337-C	0.1561	4E-8		0.1918	[0.12-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1981	chr2	183018745	183018746	rs17366218	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	2q32.1	PDE1A	rs17366218-A	0.95	2E-6		1.5384616	[1.28-1.85]	NR [NR]	N
1981	chr2	183029674	183029675	rs6734332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q32.1		rs6734332-C	NR	7E-15		0.0127	[0.0096-0.0158] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1981	chr2	183037245	183037246	rs3769810	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q32.1	PDE1A	rs3769810-A	0.7569	3E-9		0.022	[0.015-0.029] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1981	chr2	183037245	183037246	rs3769810	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q32.1	PDE1A	rs3769810-A	0.8325	4E-6		0.02334	[0.013-0.033] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1981	chr2	183037245	183037246	rs3769810	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q32.1	NR	rs3769810-A	0.2653	9E-6	(men)	0.0256	[0.014-0.037] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1981	chr2	183045824	183045825	rs6433958	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q32.1	NR	rs6433958-C	NR	5E-11		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1981	chr2	183077253	183077254	rs4666821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q32.1		rs4666821-T	NR	4E-8		0.0106	[0.0069-0.0143] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1981	chr2	183077253	183077254	rs4666821	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q32.1	PDE1A	rs4666821-T	0.5295	1E-16		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1981	chr2	183077253	183077254	rs4666821	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q32.1	PDE1A	rs4666821-T	0.5295	5E-6		0.0032	[0.0018-0.0046] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1981	chr2	183086647	183086648	rs6741055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q32.1	NR	rs6741055-G	NR	3E-11		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1981	chr2	183086647	183086648	rs6741055	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q32.1	NR	rs6741055-C	0.51	5E-17		0.0153	[0.012-0.019] unit decrease	NR [NR]	N
1981	chr2	183087066	183087067	rs13411042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q32.1		rs13411042-A	NR	4E-16		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1981	chr2	183087066	183087067	rs13411042	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q32.1	NR	rs13411042-A	NR	3E-16		0.0196	[0.015-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1982	chr2	183122037	183122038	rs6758334	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	2q32.1	PDE1A	rs6758334-?		9E-6				NR [~ 3000000] (imputed)	N
1982	chr2	183170431	183170434	rs139545129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q32.1		rs139545129-C	NR	3E-10		0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1982	chr2	183185163	183185164	rs833126	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	2q32.1	PDE1A	rs833126-?	NR	8E-6			NR	Illumina [up to 317503]	N
1982	chr2	183211442	183211443	rs12693302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q32.1		rs12693302-A	NR	1E-21		0.0195	[0.016-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1982	chr2	183211442	183211443	rs12693302	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q32.1	PDE1A	rs12693302-G	0.386197	3E-9		1.05	[1.03-1.06]	NR [8126035] (imputed)	N
1982	chr2	183212776	183212777	rs13003148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q32.1	NR	rs13003148-G	NR	2E-11		0.0187	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1982	chr2	183218992	183218993	rs1438065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q32.1		rs1438065-A	NR	8E-15		0.0156	[0.012-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1982	chr2	183224126	183224127	rs16823124	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q32.1	PDE1A	rs16823124-A	0.4653	5E-6	(Japanese)	0.2503	[0.14-0.36] unit increase	Illumina [6200000] (imputed)	N
1982	chr2	183224126	183224127	rs16823124	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q32.1	PDE1A	rs16823124-A	0.4653	2E-8	(East Asian)	0.2258	[0.15-0.31] unit increase	Illumina [6200000] (imputed)	N
1982	chr2	183224126	183224127	rs16823124	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q32.1	PDE1A	rs16823124-G		7E-15		0.195	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1982	chr2	183231361	183231361	rs3063063	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q32.1	PDE1A	rs3063063-T	0.3138	3E-19		0.0182	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1982	chr2	183235847	183235848	rs6747943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.1		rs6747943-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1983	chr2	183239874	183239875	rs7585427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q32.1		rs7585427-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1983	chr2	183265019	183265020	rs192436108	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Morganella abundance in stool	5,959 Finnish ancestry individuals	NA	2q32.1		rs192436108-A	0.0122136	6E-9		0.163556	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
1983	chr2	183274759	183274760	rs144073138	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q32.1	PDE1A	rs144073138-G	0.05965518	2E-8		0.3478	[0.23-0.47] unit increase	Affymetrix [~ 9800000] (imputed)	N
1983	chr2	183309281	183309282	rs16823254	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q32.1	PDE1A	rs16823254-T	0.766	5E-7		0.0016	[0.00082-0.00238] unit decrease	Affymetrix [NR] (imputed)	N
1983	chr2	183313813	183313814	rs13405173	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q32.1	PDE1A	rs13405173-A	0.59	3E-8	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1983	chr2	183313813	183313814	rs13405173	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	2q32.1	PDE1A	rs13405173-A	0.59	6E-9	(EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1983	chr2	183368458	183368459	rs1430146	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	2q32.1		rs1430146-?	NR	7E-7		0.71	[0.62-0.82]	Affymetrix, Illumina [29826485] (imputed)	N
1984	chr2	183376486	183376487	rs2887218	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q32.1	PDE1A	rs2887218-T	NR	2E-8		0.016388671	[0.011-0.022] unit increase	Affymetrix [NR]	N
1984	chr2	183378874	183378875	rs4666851	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs4666851-A	0.598	4E-11	(MTAG)	0.0088	[0.0063-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1984	chr2	183393679	183393680	rs1835339	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs1835339-T	0.6132	6E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1984	chr2	183433970	183433971	rs9636303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q32.1		rs9636303-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1984	chr2	183439405	183439406	rs4386288	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	2q32.1		rs4386288-?	NR	3E-7		0.7	[0.61-0.81]	Affymetrix, Illumina [29826485] (imputed)	N
1984	chr2	183446534	183446535	rs1527878	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs1527878-A	0.7566	1E-10		0.0105	[0.0074-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1984	chr2	183449724	183449725	rs1918700	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q32.1		rs1918700-G	0.26	3E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1984	chr2	183449724	183449725	rs1918700	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2q32.1	PDE1A, DNAJC10, FRZB	rs1918700-T	NR	5E-6	(resting duration, weekdays)	0.2334	[0.13-0.33] unit decrease	Affymetrix [7141204] (imputed)	N
1984	chr2	183497839	183497840	rs71427857	29088834	Kimura M	2017-08-24	Oncotarget	A genome-wide association analysis identifies PDE1A|DNAJC10 locus on chromosome 2 associated with idiopathic pulmonary arterial hypertension in a Japanese population.	Pulmonary arterial hypertension	23 Japanese ancestry cases, 2,002 Japanese ancestry controls	21 Japanese ancestry cases, 991 Japanese ancestry controls	2q32.1	PDE1A, DNAJC10	rs71427857-A	0.042	8E-9		5.759		Illumina [1347690]	N
1985	chr2	183543530	183543531	rs72896637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs72896637-T	0.0707	5E-9		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1985	chr2	183543530	183543531	rs72896637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs72896637-T	0.0707	1E-9	(MTAG)	0.0156	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1985	chr2	183591570	183591571	rs288278	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJC10	5,351 Icelandic ancestry individuals	NA	2q32.1		rs288278-G	0.3822	1E-13		0.135707	[0.1-0.171] unit decrease	Illumina [7506463] (imputed)	N
1985	chr2	183619140	183619141	rs288336	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q32.1	DNAJC10	rs288336-T	0.623125	8E-8	(DNAJC10, 8297_8_3)	0.13521491	[0.086-0.185] unit increase	Illumina [> 1000000] (imputed)	N
1986	chr2	183663834	183663835	rs1021821604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	121 European ancestry cases, 126,333 European ancestry controls, 155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	2q32.1		rs1021821604-C	NR	7E-10		6.2291	[4.25-8.21] unit increase	Illumina [23539365] (imputed)	N
1986	chr2	183665206	183665207	rs288342	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	2q32.1	intergenic	rs288342-T	NR	7E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1986	chr2	183685561	183685562	rs10931041	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (dietary energy interaction)	8,203 African American females, 3,484 Hispanic females	NA	2q32.1	FRZB, DNAJC10	rs10931041-A	NR	9E-6		0.02	[NR] unit decrease	Affymetrix [706791]	N
1986	chr2	183694498	183694499	rs7593100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs7593100-T	0.0809	7E-9	(MTAG)	0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1986	chr2	183699363	183699364	rs13009	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,363 Icelandic ancestry individuals	NA	2q32.1		rs13009-T	0.07956	5E-9		0.199695	[0.13-0.27] unit increase	Illumina [7506463] (imputed)	N
1986	chr2	183702963	183702964	rs1561369	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q32.1		rs1561369-A	NR	4E-11		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1986	chr2	183702963	183702964	rs1561369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.1		rs1561369-?	NR	8E-23				NR [~ 8900000] (imputed)	N
1986	chr2	183703335	183703336	rs288326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,363 Icelandic ancestry individuals	NA	2q32.1		rs288326-A	0.08513	2E-55		0.514324	[0.45-0.58] unit increase	Illumina [7506463] (imputed)	N
1986	chr2	183703335	183703336	rs288326	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q32.1		rs288326-A	0.12	4E-19		8.94	z score increase	Affymetrix [9061022] (imputed)	N
1986	chr2	183703335	183703336	rs288326	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q32.1		rs288326-A	0.12	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
1986	chr2	183703335	183703336	rs288326	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q32.1	NR	rs288326-A	0.1199	8E-12				NR [9056863] (imputed)	N
1986	chr2	183703335	183703336	rs288326	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q32.1	FRZB	rs288326-A	0.12	8E-19	(sFRP-3)	0.68526	[0.53-0.84] unit increase	Illumina [8683751] (imputed)	N
1986	chr2	183703335	183703336	rs288326	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q32.1	FRZB	rs288326-A	0.126	4E-55	(Secreted frizzled-related protein 3, FRZB.13740.51.3)	0.57	[0.49-0.65] unit increase	Affymetrix [10572788] (imputed)	N
1986	chr2	183703335	183703336	rs288326	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q32.1	FRZB	rs288326-A	0.1311558	9E-28	(Secreted frizzled-related protein 3)	0.6982	[0.58-0.82] unit increase	Affymetrix [509946]	N
1986	chr2	183724621	183724622	rs7566497	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	2q32.1	FRZB	rs7566497-?	NR	5E-7		0.269	[0.17-0.37] unit increase	Illumina [6319684] (imputed)	N
1986	chr2	183729512	183729513	rs6433994	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q32.1	NR	rs6433994-T	0.605	2E-19	(Secreted frizzled-related protein 3, FRZB.13740.51.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1986	chr2	183730526	183730527	rs10206992	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q32.1	FRZB	rs10206992-T	0.74575	8E-19		0.0186238	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
1986	chr2	183730526	183730527	rs10206992	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.1		rs10206992-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1986	chr2	183730526	183730527	rs10206992	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q32.1		rs10206992-?	NR	2E-18		0.0200175	[0.015-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1986	chr2	183730526	183730527	rs10206992	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q32.1	FRZB	rs10206992-T	0.748294	3E-6	(women)	0.024762	[0.014-0.035] unit increase	NR [17166351] (imputed)	N
1986	chr2	183730526	183730527	rs10206992	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q32.1	FRZB	rs10206992-T	0.747514	8E-10		0.0241398	[0.017-0.032] unit increase	NR [17166351] (imputed)	N
1986	chr2	183758559	183758560	rs7589371	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,363 Icelandic ancestry individuals	NA	2q32.1		rs7589371-T	0.2953	2E-25		0.211984	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1986	chr2	183762612	183762613	rs143674995	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q32.1	NCKAP1	rs143674995-T	0.0119	2E-10	(sFRP-3)	2.0865	[1.44-2.73] unit decrease	Illumina [8683751] (imputed)	N
1987	chr2	183773057	183773058	rs1261043632	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	2q32.1		rs1261043632-?	NR	5E-6				Illumina [7401356] (imputed)	N
1987	chr2	183785597	183785598	rs4427983	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q32.1	NR	rs4427983-A	0.736	1E-25	(Secreted frizzled-related protein 3, FRZB.13740.51.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1987	chr2	183850393	183850394	rs72888404	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q32.1	FRZB	rs72888404-T	0.9390625	2E-19	(FRZB, 13740_51_3)	0.45943052	[0.36-0.56] unit increase	Illumina [> 1000000] (imputed)	N
1988	chr2	183927620	183927621	rs35285912	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FRZB	5,363 Icelandic ancestry individuals	NA	2q32.1		rs35285912-G	0.2205	2E-39		0.292395	[0.25-0.34] unit decrease	Illumina [7506463] (imputed)	N
1988	chr2	183928067	183928068	rs72890325	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q32.1	FRZB	rs72890325-G	0.0905	2E-13	(sFRP-3)	0.65318	[0.48-0.83] unit decrease	Illumina [8683751] (imputed)	N
1988	chr2	183977031	183977032	rs10201194	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2q32.1	NUP35	rs10201194-T	0.3119	8E-6		0.0079	[0.0044-0.0114] unit increase	Affymetrix [~ 7740000] (imputed)	N
1988	chr2	183978518	183978519	rs71427874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q32.1	NUP35	rs71427874-A	0.167517	7E-23		0.029600937	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr2	184085252	184085253	rs150812854	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	2q32.1	NR	rs150812854-?	NR	5E-6		0.269714	[0.15-0.39] unit increase	NR [13958389] (imputed)	N
1989	chr2	184088113	184088114	rs17707407	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.1	NR	rs17707407-?	NR	2E-6				Affymetrix [NR]	N
1990	chr2	184261572	184261573	rs842545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q32.1		rs842545-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1991	chr2	184302157	184302158	rs187916214	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	2q32.1	NR	rs187916214-A	0.013	5E-7		5.02	z score decrease	Affymetrix, Illumina [9000000] (imputed)	N
1991	chr2	184322651	184322651	rs201657578	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	2q32.1	NR	rs201657578-GTGCA	0.008031	9E-7		0.8352	[0.50-1.17] unit decrease	Illumina [10677593] (imputed)	N
1991	chr2	184351233	184351234	rs73042687	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q32.1	NA	rs73042687-?		8E-11				Affymetrix, Illumina [NR] (imputed)	N
1991	chr2	184407100	184407101	rs577242570	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Acute reaction to stress	4,314 European ancestry cases, 52,323 European ancestry controls	NA	2q32.1		rs577242570-G	0.0039738	5E-8		2.33		Affymetrix [15517788] (imputed)	N
1991	chr2	184416609	184416610	rs56306056	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q32.1		rs56306056-G	0.782	9E-13		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1991	chr2	184416609	184416610	rs56306056	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q32.1	intergenic	rs56306056-G	0.785312	4E-10		0.0156626	[0.011-0.021] unit decrease	NR [16516521] (imputed)	N
1992	chr2	184442387	184442388	rs2141412	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	2q32.1	NR	rs2141412-A	0.801379	6E-6		4.52405	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
1992	chr2	184444369	184444370	rs1950038	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour in bipolar disorder	398 European ancestry bipolar disorder cases, 1,231 European ancestry bipolar disorder controls	NA	2q32.1	Intergenic	rs1950038-T	0.3	7E-7		1.6	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1992	chr2	184457090	184457091	rs4666634	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	2q32.1	NA	rs4666634-A	0.667833	1E-8		0.00558248	[0.0037-0.0075] unit decrease	NR [NR] (imputed)	N
1992	chr2	184472122	184472123	rs187628460	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs187628460-A	0.0122	3E-8	(PRPS2)	0.1362	NR unit increase	Illumina [1671387] (imputed)	N
1992	chr2	184472122	184472123	rs187628460	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs187628460-A	0.0122	2E-8	(PRPS1)	0.03481	NR unit increase	Illumina [1671387] (imputed)	N
1992	chr2	184483158	184483159	rs62195769	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (ICD-10 coded)	8,276 British ancestry cases, 209,308 British ancestry controls	NA	2q32.1	NR	rs62195769-A	0.1074	6E-8		0.0052	[0.0032-0.0072] unit increase	NR [7666894] (imputed)	N
1992	chr2	184492740	184492741	rs34395537	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q32.1	NR	rs34395537-?	NR	8E-10	(Latino)	1.7295	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1992	chr2	184492740	184492741	rs34395537	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q32.1	NR	rs34395537-?	NR	3E-7	(Latino)	1.3226	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1992	chr2	184534995	184534996	rs1012940	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	2q32.1	NR	rs1012940-A	0.7	1E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
1993	chr2	184556859	184556860	rs77731990	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		NUP35	rs77731990-G	0.08	7E-7				Illumina [1679420] (imputed)	N
1993	chr2	184556859	184556860	rs77731990	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA		NR	rs77731990-?	NR	3E-8	(Japanese)	1.1807	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1993	chr2	184573407	184573408	rs12612750	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q32.1	NR	rs12612750-A	0.291	2E-8		0.00678852	[0.0044-0.0091] unit decrease	NR [9732723] (imputed)	N
1993	chr2	184585639	184585640	rs75098759	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	2q32.1	NR	rs75098759-?	NR	4E-6	(male)	0.7	[0.41-0.99] unit increase	Illumina [7411206] (imputed)	N
1993	chr2	184588956	184588957	rs13425639	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	2q32.1	NR	rs13425639-G	0.82	7E-6	(EA)	0.11	[0.06-0.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1993	chr2	184616797	184616798	rs767047	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q32.1	Intergenic	rs767047-G	0.3736	2E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1993	chr2	184625333	184625334	rs2580779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q32.1	Intergenic	rs2580779-T	0.6915	4E-9	(MTAG)	0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr2	184723499	184723500	rs62199592	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	2q32.1		rs62199592-G	NR	6E-7		1.6071	[1.24-1.97]	Illumina [11601089] (imputed)	N
1994	chr2	184788245	184788246	rs1095461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q32.1	Intergenic	rs1095461-T	0.1439	2E-10	(MTAG)	0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1994	chr2	184788245	184788246	rs1095461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q32.1	Intergenic	rs1095461-T	0.1437	4E-8	(MTAG)	0.0129	[0.0082-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1995	chr2	184905254	184905255	rs7597877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q32.1	Intergenic	rs7597877-T	0.5624	2E-9	(MTAG)	0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1995	chr2	184905254	184905255	rs7597877	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q32.1	Intergenic	rs7597877-C	0.4376	1E-11		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1996	chr2	184973452	184973453	rs181195681	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	2q32.1		rs181195681-C	NR	3E-6		6.5559	[3.89-9.23] unit increase	Illumina [NR] (imputed)	N
1996	chr2	185002920	185002921	rs62176532	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	ADHD vs anorexia nervosa (ordinary least squares (OLS))	19,099 ADHD cases, 16,992 anorexia nervosa cases	NA	2q32.1		rs62176532-?	NR	1E-8		0.0203	NR unit increase	NR [5496413] (imputed)	N
1996	chr2	185033064	185033065	rs6739913	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q32.1	ZNF804A	rs6739913-A	0.2846	6E-10		0.1675	[0.11-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1996	chr2	185040941	185040942	rs11680969	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q32.1	NR	rs11680969-G	0.23161	2E-9		0.049725436	[0.033-0.066] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1996	chr2	185052061	185052062	rs7602025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q32.1		rs7602025-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1996	chr2	185053384	185053385	rs62174974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs62174974-A	0.1949	3E-9		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1997	chr2	185160511	185160512	rs41434646	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (maximal voluntary ventilation)	8,842 Korean ancestry individuals	NA	2q32.1	LOC102724340	rs41434646-?	NR	3E-8		5.95	[NR] unit increase	Affymetrix [2476376] (imputed)	N
1997	chr2	185160511	185160512	rs41434646	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (forced vital capacity)	8,842 Korean ancestry individuals	NA	2q32.1	LOC102724340	rs41434646-?	NR	1E-7		4.16	[NR] unit increase	Affymetrix [2476376] (imputed)	N
1997	chr2	185160511	185160512	rs41434646	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (forced expiratory volume in 1 second)	8,842 Korean ancestry individuals	NA	2q32.1	LOC102724340	rs41434646-?	NR	9E-6		4.15	[NR] unit increase	Affymetrix [2476376] (imputed)	N
1998	chr2	185293915	185293916	rs11691711	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q32.1	NR	rs11691711-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1998	chr2	185296257	185296258	rs13008156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.1	NUP35	rs13008156-?	NR	8E-6	(adenosine)	0.19002786	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1998	chr2	185299617	185299618	rs981320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.1		rs981320-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1998	chr2	185318034	185318035	rs537364753	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q32.1	Intergenic	rs537364753-?		6E-6		3.06	[1.89-4.96]	Illumina [7645193] (imputed)	N
1999	chr2	185353472	185353473	rs1014024	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q32.1	NR	rs1014024-?		3E-6				Illumina [4322238] (imputed)	N
1999	chr2	185365010	185365011	rs11893590	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	2q32.1		rs11893590-T	0.972313	6E-6		0.0218698	[0.0058-0.0379] unit decrease	Illumina [7666802] (imputed)	N
1999	chr2	185372577	185372578	rs17508064	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.1	NR	rs17508064-?	NR	2E-6				Affymetrix [NR]	N
1999	chr2	185376296	185376297	rs1443024	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q32.1	ZNF804A	rs1443024-A	NR	6E-7	(between families)	4.999	unit increase	Affymetrix [up to 15107142] (imputed)	N
1999	chr2	185379771	185379772	rs34370146	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		2q32.1	intergenic	rs34370146-C	0.147	5E-7		0.574	[0.35-0.79] unit increase	Illumina [640625] (imputed)	N
1999	chr2	185426963	185426964	rs4371322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q32.1		rs4371322-G	NR	2E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1999	chr2	185436261	185436262	rs17430279	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.1	ZNF804A	rs17430279-G	0.152	4E-6	(Height z-score change )	0.03	[NR] SD/y increase	Illumina [899892]	N
1999	chr2	185448230	185448231	rs359899	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		2q32.1	intergenic	rs359899-C	0.155128	6E-8		0.620018	[0.4-0.84] unit increase	Illumina [640625] (imputed)	N
1999	chr2	185455628	185455629	rs1019706	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q32.1	NR	rs1019706-G	0.294594579432659	2E-9		0.006046217	[0.0041-0.008] unit decrease	NR [NR]	N
1999	chr2	185455628	185455629	rs1019706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q32.1		rs1019706-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1999	chr2	185459543	185459544	rs1978573	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	2q32.1	NR	rs1978573-T	NR	1E-8		0.01454	NR unit decrease	NR [7259579]	N
1999	chr2	185459543	185459544	rs1978573	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q32.1	ZNF804A	rs1978573-T	0.300324	2E-8		5.6	z score decrease	NR [10847151] (imputed)	N
1999	chr2	185462040	185462041	rs10497655	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	2q32.1		rs10497655-?	NR	3E-8				NR [2625067]	N
1999	chr2	185462040	185462041	rs10497655	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	2q32.1		rs10497655-?	NR	5E-8				NR [2625067]	N
1999	chr2	185462040	185462041	rs10497655	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	2q32.1	ZNF804A	rs10497655-T	0.3151	4E-7		0.012423929	[0.0069-0.0179] unit increase	NR [9417325] (imputed)	N
1999	chr2	185462040	185462041	rs10497655	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q32.1	NR	rs10497655-?		2E-8				NR [520857]	N
1999	chr2	185462040	185462041	rs10497655	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	2q32.1	NR	rs10497655-C	0.3206	3E-8		0.0106	[0.0069-0.0143] unit decrease	NR [8968716] (imputed)	N
1999	chr2	185462040	185462041	rs10497655	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	2q32.1	intergenic	rs10497655-?	NR	3E-7				Illumina [655023]	N
1999	chr2	185462040	185462041	rs10497655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q32.1	NR	rs10497655-C	0.310867637508776	9E-10		0.007645238	[0.0052-0.0101] unit decrease	NR [NR]	N
1999	chr2	185462040	185462041	rs10497655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q32.1	NR	rs10497655-C	0.310867637508776	3E-10		0.009997566	[0.0069-0.0131] unit decrease	NR [NR]	N
1999	chr2	185462040	185462041	rs10497655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q32.1	NR	rs10497655-C	0.310867637508776	9E-10		0.00815039	[0.0055-0.0108] unit decrease	NR [NR]	N
1999	chr2	185462040	185462041	rs10497655	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q32.1	NR	rs10497655-C	0.310867637508776	3E-10		0.0063818865	[0.0044-0.0084] unit decrease	NR [NR]	N
1999	chr2	185462040	185462041	rs10497655	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q32.1	NR	rs10497655-T	NR	5E-8		5.469	z score increase	Affymetrix [10847151] (imputed)	N
1999	chr2	185462040	185462041	rs10497655	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q32.1	ZNF804A	rs10497655-T	0.314337	8E-10		6.14	z score increase	NR [10847151] (imputed)	N
1999	chr2	185462040	185462041	rs10497655	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q32.1	ZNF804A	rs10497655-T	0.6856599999999999	1E-7		5.311	z score increase	Illumina [18485882] (imputed)	N
2000	chr2	185508495	185508496	rs57159364	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	2q32.1		rs57159364-?	NR	2E-9		0.0207	NR unit decrease	NR [4428082] (imputed)	N
2000	chr2	185529343	185529344	rs147725178	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q32.1	ZNF804A	rs147725178-C	0.960956	6E-9		0.030739	[0.02-0.041] unit increase	NR [16516521] (imputed)	N
2000	chr2	185533579	185533580	rs7597593	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	2q32.1	ZNF804A	rs7597593-T	0.62	3E-12				Affymetrix, Illumina [at least 918921] (imputed)	N
2000	chr2	185533579	185533580	rs7597593	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.1	ZNF804A	rs7597593-T	NR	2E-11		1.069	[1.05-1.09]	Illumina [6627481] (imputed)	N
2000	chr2	185533579	185533580	rs7597593	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q32.1	ZNF804A	rs7597593-T	NR	9E-11		1.066	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2000	chr2	185533579	185533580	rs7597593	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q32.1	ZNF804A	rs7597593-T	NR	8E-6	(5 degree of freedom test)	1.055	[1.03-1.08]	NR [1252901] (imputed)	N
2000	chr2	185558815	185558816	rs12104591	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.1	NR	rs12104591-?	NR	6E-6				Affymetrix [NR]	N
2000	chr2	185567028	185567029	rs76167860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q32.1	Intergenic	rs76167860-T	0.8893	4E-8	(MTAG)	0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2001	chr2	185601419	185601420	rs11693094	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	2q32.1		rs11693094-?	NR	3E-9		0.0178	NR unit decrease	NR [4484088] (imputed)	N
2001	chr2	185601419	185601420	rs11693094	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q32.1	NR	rs11693094-?		4E-11				NR [8377093]	N
2001	chr2	185601419	185601420	rs11693094	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q32.1	NR	rs11693094-?		6E-11				NR [8377093]	N
2001	chr2	185601419	185601420	rs11693094	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q32.1	NR	rs11693094-?	NR	3E-11				Illumina [up to 5582932] (imputed)	N
2001	chr2	185601419	185601420	rs11693094	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.1	ZNF804A	rs11693094-C	NR	2E-11	(EA)	1.0764263	[1.05-1.1]	Illumina [6627481] (imputed)	N
2001	chr2	185601419	185601420	rs11693094	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.1	NR	rs11693094-C	NR	4E-12		1.0752687	[NR]	Illumina [7158791] (imputed)	N
2001	chr2	185601419	185601420	rs11693094	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q32.1	ZNF804A	rs11693094-C	0.542	2E-12		1.0764263	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
2001	chr2	185607756	185607757	rs34481141	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	182,791 European ancestry individuals	NA	2q32.1	ZNF804A	rs34481141-A	0.851126	7E-9		0.0253331	[0.017-0.034] unit decrease	NR [16426330] (imputed)	N
2001	chr2	185607756	185607757	rs34481141	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs34481141-A	0.8497	4E-8	(conditional-joint)	0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2001	chr2	185640727	185640728	rs10196799	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q32.1	ZNF804A	rs10196799-?	NR	5E-9		1.058	[1.04-1.08]	Illumina [8000000] (imputed)	N
2001	chr2	185663303	185663304	rs4666990	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q32.1	NR	rs4666990-?	NR	2E-15		1.07401	[1.06-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
2001	chr2	185663303	185663304	rs4666990	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q32.1	ZNF804A	rs4666990-?	NR	5E-11		0.013381981	[0.0094-0.0174] unit decrease	NR [7306098]	N
2001	chr2	185727352	185727353	rs62200787	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.1	NR	rs62200787-T	NR	2E-8		1.098901	[NR]	Illumina [7158791] (imputed)	N
2002	chr2	185750641	185750642	rs62200793	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	2q32.1	ZNF804A	rs62200793-T		1E-8				NR [NR] (imputed)	N
2002	chr2	185757010	185757011	rs12693399	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	2q32.1	ZNF804A	rs12693399-A	0.218	1E-8		0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
2002	chr2	185757010	185757011	rs12693399	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	2q32.1	ZNF804A	rs12693399-A	0.218	1E-8		0.0186	[0.012-0.025] unit increase	Affymetrix [up to 73355667] (imputed)	N
2002	chr2	185778427	185778428	rs1344706	18677311	O'Donovan MC	2008-07-30	Nat Genet	Identification of loci associated with schizophrenia by genome-wide association and follow-up.	Schizophrenia	479 European ancestry cases, 2,937 European ancestry controls	4,143 European ancestry cases, 6,515 European ancestry controls, 1,782 East Asian ancestry cases, 1,865 East Asian ancestry controls, 741 cases, 1,517 controls	2q32.1	ZNF804A	rs1344706-T	0.59	2E-7		1.12	[NR]	Affymetrix [362532]	N
2002	chr2	185785790	185785791	rs11681373	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2q32.1		rs11681373-?	NR	2E-8		0.0168	unit increase	NR [NR]	N
2002	chr2	185797227	185797228	rs6755404	23717212	Band G	2013-05-23	PLoS Genet	Imputation-based meta-analysis of severe malaria in three African populations.	Malaria	5,425 African ancestry cases, 6,891 African ancestry controls	NA	2q32.1	NR	rs6755404-A	NR	1E-6		1.26	[1.15-1.38]	Illumina [1300000] (imputed)	N
2002	chr2	185811939	185811940	rs4380187	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4380187-?	NR	6E-12				NR [2625067]	N
2002	chr2	185811939	185811940	rs4380187	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs4380187-?	NR	2E-10				NR [2625067]	N
2002	chr2	185811939	185811940	rs4380187	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs4380187-A	0.5457	8E-12		0.074770436	[0.053-0.096] unit increase	NR [NR]	N
2002	chr2	185811939	185811940	rs4380187	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA		NR	rs4380187-A	0.5457	1E-10		0.070146814	[0.049-0.091] unit increase	NR [NR]	N
2002	chr2	185811939	185811940	rs4380187	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs4380187-?		8E-9				NR [520857]	N
2002	chr2	185811939	185811940	rs4380187	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA		ZNF804A	rs4380187-?		8E-12				NR [6786993] (imputed)	N
2002	chr2	185811939	185811940	rs4380187	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls		ZNF804A	rs4380187-A	0.53	9E-7		1.05643	[1.03-1.08]	NR [9372253] (imputed)	N
2002	chr2	185811939	185811940	rs4380187	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		ZNF804A	rs4380187-A		7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
2002	chr2	185811939	185811940	rs4380187	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios		intergenic	rs4380187-A	0.529	6E-8		1.078	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
2002	chr2	185831013	185831014	rs775583810	33482370	Kim SK	2021-01-19	J Shoulder Elbow Surg	A Genome Wide Association Study For Shoulder Impingement and Rotator Cuff Disease.	Shoulder impingement or rotator cuff tear	3,864 European ancestry shoulder impingement cases, 5,701 European ancestry rotator cuff tear cases, up to 614,568 European ancestry controls	NA	2q32.1	ZNF804A	rs775583810-T	0.0011	2E-8		2.9972	NR	Affymetrix [up to 17556449] (imputed)	N
2002	chr2	185831013	185831014	rs775583810	32663566	Tashjian RZ	2020-07-11	J Shoulder Elbow Surg	Genetic Variants Associated With Rotator Cuff Tearing Utilizing Multiple Population-Based Genetic Resources.	Rotator cuff injury	5,701 European ancestry cases, 406,310 European ancestry controls	NA	2q32.1		rs775583810-T	0.0011	4E-9		3.68	[2.39-5.67]	Affymetrix [17136336] (imputed)	N
2002	chr2	185835897	185835898	rs6741522	25420145	Debette S	2014-11-24	Nat Genet	Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection.	Cervical artery dissection	1,393 European ancestry cases, 14,416 European ancestry controls	659 European ancestry cases, 2,648 European ancestry controls	2q32.1	ZNF804A	rs6741522-A	0.13	2E-6		1.26	[1.15-1.39]	Illumina [472862]	N
2003	chr2	185883876	185883877	rs115438240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs115438240-T	0.9435	3E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2003	chr2	185883876	185883877	rs115438240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs115438240-T	0.9435	1E-9	(MTAG)	0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2003	chr2	185921691	185921692	rs263771	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q32.1	NR	rs263771-?		3E-11		0.017013	[0.012-0.022] unit decrease	Affymetrix [19400418] (imputed)	N
2003	chr2	185921691	185921692	rs263771	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2q32.1	ZNF804A	rs263771-A	0.23	7E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
2003	chr2	185921691	185921692	rs263771	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2q32.1	ZNF804A	rs263771-A	0.23	2E-8		0.037	[0.024-0.05] unit increase	Affymetrix [at least 8900000] (imputed)	N
2004	chr2	186016473	186016474	rs112047269	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q32.1	intergenic	rs112047269-?	NR	1E-6	(Hispanic)	1.5873016	[1.32-1.92]	Illumina [at least 5000000] (imputed)	N
2004	chr2	186024734	186024735	rs11678036	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q32.1	NR	rs11678036-C	0.390262875779163	6E-6	(IGP26)	0.1459	[0.082-0.209] unit increase	Illumina [~ 2500000] (imputed)	N
2004	chr2	186036123	186036124	rs62198555	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	2q32.1	NR	rs62198555-G	0.5760000000000001	7E-7		1.3027787	[NR]	NR [9372253] (imputed)	N
2004	chr2	186044626	186044627	rs1483242	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.1	NR	rs1483242-G	NR	7E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2004	chr2	186047065	186047066	rs1483245	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q32.1	NR	rs1483245-?	NR	1E-8		1.05169	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
2004	chr2	186052891	186052892	rs76585135	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	2q32.1	NR	rs76585135-G	0.213	1E-8		0.0153225	[0.01-0.021] unit increase	NR [9732723] (imputed)	N
2004	chr2	186064118	186064119	rs62199979	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q32.1	NR	rs62199979-T	0.279	6E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
2004	chr2	186070039	186070040	rs10171577	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		2q32.1	intergenic	rs10171577-C	0.133974	3E-6		0.570398	[0.34-0.81] unit increase	Illumina [640625] (imputed)	N
2004	chr2	186076219	186076220	rs71430179	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum posterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q32.1	NR	rs71430179-?		3E-6				Illumina [4322238] (imputed)	N
2004	chr2	186103274	186103275	rs12693403	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs12693403-C	0.5315	3E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2004	chr2	186109363	186109364	rs6735842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q32.1		rs6735842-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2005	chr2	186139825	186139826	rs10205057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs10205057-T	0.5619	4E-10		0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2005	chr2	186141700	186141701	rs115002533	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs115002533-G	0.0122	4E-9	(GAMT)	0.1758	NR unit increase	Illumina [1671387] (imputed)	N
2005	chr2	186176135	186176136	rs4667029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs4667029-C	0.6055	4E-11	(MTAG)	0.0089	[0.0064-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2005	chr2	186176135	186176136	rs4667029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q32.1	Intergenic	rs4667029-C	0.6035	4E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2005	chr2	186184029	186184030	rs1364477	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q32.1	NR	rs1364477-G	0.178595763239875	6E-6	(IGP17)	0.1816	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
2005	chr2	186187831	186187832	rs6704925	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		2q32.1	intergenic	rs6704925-G	0.135497	7E-7		0.610639	[0.38-0.85] unit increase	Illumina [640625] (imputed)	N
2005	chr2	186193857	186193858	rs1593205	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q32.1	ZNF804A, FSIP2	rs1593205-A	0.8199	4E-9		0.0129873	[0.0087-0.0173] unit increase	Affymetrix [11880941] (imputed)	N
2005	chr2	186197852	186197853	rs184082519	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Atopobiaceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q32.1		rs184082519-T	0.0100959	1E-9		0.193126	[0.13-0.26] unit increase	Illumina [7980478] (imputed)	N
2005	chr2	186203742	186203743	rs4666682	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q32.1	ZNF804A, FSIP2	rs4666682-G	0.8203	4E-9		1.0257254		Affymetrix [11880941] (imputed)	N
2005	chr2	186208379	186208380	rs62198803	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q32.1	NR	rs62198803-A	NR	3E-9		5.911	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
2005	chr2	186208379	186208380	rs62198803	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q32.1	NR	rs62198803-?	NR	8E-8		5.364	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2005	chr2	186209309	186209310	rs850892	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	2q32.1	intergenic	rs850892-?	NR	1E-6	(Female, Pre-puberty)	0.101	[0.06-0.142] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2005	chr2	186243560	186243561	rs7599860	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q32.1	NR	rs7599860-C	0.227634	5E-9		0.043809146	[0.029-0.058] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2005	chr2	186243560	186243561	rs7599860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q32.1	Intergenic	rs7599860-A	0.2413	4E-9		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
2006	chr2	186274026	186274027	rs72908868	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	2q32.1	ZNF804A, LOC101927196	rs72908868-?		7E-6	(EA)	0.269	[0.15-0.39] unit increase	Illumina [7205781] (imputed)	N
2007	chr2	186477177	186477178	rs112709199	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	2q32.1		rs112709199-A	NR	9E-6		0.51947	[0.3-0.74] unit decrease	Illumina [NR] (imputed)	N
2009	chr2	186671255	186671256	rs17826498	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FSIP2	rs17826498-?	NR	5E-9	(male)	3.17638	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2009	chr2	186709691	186709692	rs183319101	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q32.1	Intergenic	rs183319101-?		6E-6		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
2009	chr2	186709691	186709692	rs183319101	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q32.1	Intergenic	rs183319101-?		8E-6		1.3333333	[1.18-1.52]	Illumina [7645193] (imputed)	N
2010	chr2	186817847	186817848	rs6754498	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	2q32.1	intergenic	rs6754498-?	NR	6E-7		0.832	[0.4-1.27] unit increase	Illumina [at least 13000000] (imputed)	N
2011	chr2	187033803	187033804	rs138711926	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q32.1	LINC01473, ZC3H15	rs138711926-G	0.04	5E-8		0.98	[0.63-1.33] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2011	chr2	187033803	187033804	rs138711926	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q32.1	LINC01473, ZC3H15	rs138711926-G	0.042	1E-7		0.9692	[0.61-1.33] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2014	chr2	187391700	187391701	rs13001360	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q32.1	NR	rs13001360-?		9E-6				Illumina [4322238] (imputed)	N
2015	chr2	187519337	187519338	rs9333290	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	2q32.1	ITGAV, FAM171B	rs9333290-T	0.3	4E-6		0.037	[0.021-0.053] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
2015	chr2	187519337	187519338	rs9333290	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	2q32.1	ITGAV, FAM171B	rs9333290-T	0.3	8E-7		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
2015	chr2	187522749	187522750	rs13006483	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	2q32.1	ITGAV	rs13006483-T	0.2848	5E-11		1.0295519	[NR]	Illumina [12493444] (imputed)	N
2015	chr2	187530519	187530520	rs2084448	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q32.1	ITGAV	rs2084448-T	0.7063	5E-14		0.0197	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
2015	chr2	187534182	187534183	rs2595389	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q32.1	ITGAV	rs2595389-T	0.54	4E-8				NR [> 9500000] (imputed)	N
2015	chr2	187546911	187546912	rs13027560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q32.1		rs13027560-?	NR	1E-18				NR [~ 8900000] (imputed)	N
2015	chr2	187551306	187551307	rs12615659	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	2q32.1	ITGAV, FAM171B	rs12615659-A	0.3	1E-6		0.11	[0.067-0.153] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
2016	chr2	187576378	187576378	rs144344067	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q32.1	ITGAV, FAM171B	rs144344067-A	0.895	1E-8		1.12	1.08-1.16	Illumina [9725440] (imputed)	N
2016	chr2	187576378	187576378	rs144344067	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q32.1	ITGAV, FAM171B	rs144344067-?		8E-7				Illumina [9560910] (imputed)	N
2016	chr2	187588879	187588880	rs35986780	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q32.1	VANGL2	rs35986780-?		3E-9				NR [7428630] (imputed)	N
2016	chr2	187601638	187601639	rs11683459	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q32.1	FAM171B	rs11683459-G	0.84765625	3E-13	(FAM171B, 8786_6_3)	0.2483533	[0.18-0.31] unit increase	Illumina [> 1000000] (imputed)	N
2016	chr2	187626337	187626338	rs13026081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.1		rs13026081-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2016	chr2	187642458	187642459	rs76851721	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM171B	5,368 Icelandic ancestry individuals	NA	2q32.1		rs76851721-C	0.1965	3E-18		0.205756	[0.16-0.25] unit decrease	Illumina [7506463] (imputed)	N
2016	chr2	187642458	187642459	rs76851721	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q32.1	FAM171B	rs76851721-A	0.80484375	1E-41	(FAM171B, 8851_42_3)	0.41643214	[0.36-0.48] unit increase	Illumina [> 1000000] (imputed)	N
2016	chr2	187651854	187651855	rs7568974	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM171B	5,364 Icelandic ancestry individuals	NA	2q32.1		rs7568974-A	0.1982	2E-62		0.380123	[0.34-0.42] unit decrease	Illumina [7506463] (imputed)	N
2016	chr2	187685194	187685195	rs10931256	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q32.1	FAM171B	rs10931256-C	0.216	1E-29	(Protein FAM171B, FAM171B.8851.42.3)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
2017	chr2	187720019	187720020	rs13412001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q32.1		rs13412001-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2017	chr2	187723367	187723368	rs62171916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	ZSWIM2	rs62171916-C	NR	4E-8		0.0165684	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
2017	chr2	187731348	187731349	rs72895339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	ZSWIM2	rs72895339-C	NR	3E-8		0.0165823	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
2017	chr2	187731383	187731384	rs10497673	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	ZSWIM2	rs10497673-T	NR	1E-8		0.0165765	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2017	chr2	187755811	187755812	rs6732937	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.1	NR	rs6732937-?	NR	2E-6				Affymetrix [NR]	N
2017	chr2	187756090	187756091	rs1349520	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs1349520-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2017	chr2	187784527	187784528	rs1011386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q32.1	NR	rs1011386-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2017	chr2	187786498	187786499	rs1000624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q32.1	ZSWIM2	rs1000624-G	NR	2E-9		0.0202208	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
2017	chr2	187816320	187816321	rs28558491	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q32.1		rs28558491-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2017	chr2	187816320	187816321	rs28558491	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q32.1	ZSWIM2	rs28558491-T	0.735	1E-11		0.1874	[0.13-0.24] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2017	chr2	187818933	187818934	rs7593919	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q32.1	intergenic	rs7593919-?	NR	5E-6		0.108	[0.039-0.177] unit decrease	Illumina [at least 13000000] (imputed)	N
2017	chr2	187821909	187821910	rs62173497	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC018735.1	rs62173497-A	NR	1E-9		0.028065	[0.019-0.037] unit decrease	Affymetrix [321114] (imputed)	N
2018	chr2	187836722	187836723	rs935806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC018735.1	rs935806-A	NR	1E-9		0.0188631	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
2018	chr2	187836722	187836723	rs935806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC018735.1	rs935806-A	NR	1E-9		0.0188426	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
2018	chr2	187836722	187836723	rs935806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC018735.1	rs935806-A	NR	2E-8		0.0176811	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
2018	chr2	187908847	187908848	rs62173537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62173537-G	NR	8E-13		0.0317468	[0.023-0.04] unit decrease	Affymetrix [319769] (imputed)	N
2018	chr2	187908847	187908848	rs62173537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62173537-G	NR	2E-12		0.0313628	[0.023-0.04] unit decrease	Affymetrix [319769] (imputed)	N
2018	chr2	187908847	187908848	rs62173537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62173537-G	NR	6E-12		0.0309136	[0.022-0.04] unit decrease	Affymetrix [321169] (imputed)	N
2018	chr2	187908847	187908848	rs62173537	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs62173537-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
2018	chr2	187908847	187908848	rs62173537	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q32.1	NR	rs62173537-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2018	chr2	187956732	187956733	rs16828607	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs16828607-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q32.1		rs17576323-C	NR	2E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs17576323-C	NR	9E-13		0.0254454	[0.018-0.032] unit decrease	Affymetrix [321114] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	2q32.1	AC007319.1	rs17576323-T		3E-8		5.354	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q32.1	NR	rs17576323-T	NR	3E-6		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q32.1		rs17576323-T	NR	3E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2019	chr2	188003117	188003118	rs17576323	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q32.1	NR	rs17576323-T	NR	3E-9		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62172472-A	NR	3E-12		0.024594	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62172472-A	NR	3E-12		0.0245729	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs62172472-A	NR	3E-17		0.0301621	[0.023-0.037] unit decrease	Affymetrix [321169] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2q32.1	CALCRL	rs62172472-G	0.7983	2E-9				Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	2q32.1	CALCRL	rs62172472-G	0.79	2E-10				Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2q32.1	CALCRL	rs62172472-G	0.7983	1E-9		0.045	[0.03-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	2q32.1	CALCRL	rs62172472-G	0.79	2E-10		0.046	[0.032-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	2q32.1	CALCRL	rs62172472-G	NR	4E-11		0.047	[0.033-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2q32.1	CALCRL	rs62172472-G	0.7983	4E-10		0.0458	[0.031-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2019	chr2	188028316	188028317	rs62172472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q32.1		rs62172472-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2019	chr2	188075604	188075605	rs186934434	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	2q32.1	NR	rs186934434-A	0.01606	2E-6		0.5801	[0.34-0.82] unit decrease	Illumina [34985077] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.532	7E-12		0.0259	[0.018-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.532	3E-6	(EA, men)	0.0274	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.532	2E-12	(EA)	0.0282	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.532	8E-10	(EA)	0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.532	8E-10		0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.5302	3E-6	(women)	0.0274	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.5302	3E-6	(women)	0.0274	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q32.1	CALCRL	rs13424740-T	0.5302	3E-6	(EA, women)	0.0274	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13424740-?	0.532	1E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13424740-?	0.532	1E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	2q32.1	NR	rs13424740-T	0.529034400293698	1E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q32.1	NR	rs13424740-T	0.529034400293698	2E-12		0.022926193	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2019	chr2	188083122	188083123	rs13424740	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q32.1	CALCRL	rs13424740-T	0.531	8E-6	(EA, men)	0.018	[0.01-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2019	chr2	188088309	188088310	rs1528240	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs1528240-C	NR	5E-12		0.0220959	[0.016-0.028] unit increase	Affymetrix [323858] (imputed)	N
2020	chr2	188100638	188100639	rs1918898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs1918898-T	NR	3E-10		0.0211285	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
2020	chr2	188100638	188100639	rs1918898	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q32.1	AC007319.1	rs1918898-T	0.3663	1E-7		0.0315	[0.02-0.043] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q32.1	NR	rs1569135-A	0.54	1E-33		0.021	[0.018-0.024] unit increase	Affymetrix [2446094] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q32.1	NR	rs1569135-A	0.54	5E-8				Affymetrix [2446094] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	2q32.1	NR	rs1569135-A	0.5373	3E-33		0.0205	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q32.1	NA	rs1569135-A	0.5372	3E-37		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q32.1	NR	rs1569135-A	0.5372	3E-37		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q32.1	CALCRL	rs1569135-A	0.514	2E-8		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.5297	6E-10	(EA)	0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.5285	7E-7	(EA, women)	0.0225	[0.014-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.5233	3E-10		0.0208	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.523	2E-6	(women)	0.0213	[0.013-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.529	7E-8	(EA, men)	0.0261	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.529	7E-7	(EA, women)	0.0218	[0.013-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188115397	188115398	rs1569135	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q32.1	CALCRL	rs1569135-A	0.529	1E-12	(EA)	0.0237	[0.017-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2020	chr2	188116195	188116196	rs13404250	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q32.1	NR	rs13404250-T	0.3291	8E-29		0.0204	[0.017-0.024] unit decrease	NR [~ 27400000] (imputed)	N
2020	chr2	188116195	188116196	rs13404250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13404250-C	0.6693	5E-10	(EA, women)	0.0347	[0.024-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2020	chr2	188116195	188116196	rs13404250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13404250-C	0.6693	2E-8	(women)	0.0296	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2020	chr2	188116195	188116196	rs13404250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13404250-?	0.6693	3E-8	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2020	chr2	188116195	188116196	rs13404250	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q32.1	CALCRL	rs13404250-?	0.6693	3E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2020	chr2	188121366	188121367	rs28558777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs28558777-G	NR	6E-15		0.0239547	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
2020	chr2	188129126	188129127	rs13406361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs13406361-C	NR	5E-18		0.0245975	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
2020	chr2	188129126	188129127	rs13406361	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs13406361-C	NR	1E-17		0.0243222	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
2020	chr2	188129668	188129669	rs75267082	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q32.1	CALCRL	rs75267082-A	0.8922	2E-10		0.0034	[0.0022-0.0046] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2020	chr2	188151939	188151940	rs1398060	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q32.1	NR	rs1398060-T	0.4608	5E-10		0.015490541	[0.011-0.02] unit decrease	Affymetrix [10549349] (imputed)	N
2020	chr2	188152748	188152749	rs7606059	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q32.1	CALCRL	rs7606059-T	0.335053	2E-12		0.0105079	[0.0076-0.0134] unit decrease	Affymetrix [12370749]	N
2020	chr2	188153863	188153864	rs186493621	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	2q32.1	TFPI, CALCRL	rs186493621-A	0.985	9E-10	(YKL-40)	36.147	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
2020	chr2	188157666	188157667	rs858919	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q32.1	LOC105373786	rs858919-C	0.63991	3E-6		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
2020	chr2	188163520	188163521	rs56054257	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs56054257-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
2020	chr2	188165165	188165166	rs17705966	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2q32.1	CALCRL	rs17705966-A	NR	1E-9		0.0448	[0.03-0.059] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2020	chr2	188165165	188165166	rs17705966	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2q32.1	CALCRL	rs17705966-A	0.7932	3E-10		0.0455	[0.031-0.06] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2020	chr2	188168510	188168510	rs749833708	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs749833708-TGTAA	NR	5E-12		0.0196067	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
2020	chr2	188168566	188168567	rs60980181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q32.1		rs60980181-A	NR	4E-12		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2020	chr2	188168566	188168567	rs60980181	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q32.1	CALCRL	rs60980181-A	0.165	2E-12		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2020	chr2	188172979	188172979	rs774716952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs774716952-AAC	NR	3E-16		0.0246117	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
2020	chr2	188172979	188172979	rs774716952	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs774716952-AAC	NR	5E-16		0.024419	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
2020	chr2	188180408	188180409	rs62174474	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	2q32.1	intergenic	rs62174474-C	0.9439	8E-6		0.7084	[0.4-1.02] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2020	chr2	188184434	188184435	rs840585	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q32.1	C1orf106, KIF21B, CACNA1S	rs840585-?		4E-14				NR [7428630] (imputed)	N
2020	chr2	188184434	188184435	rs840585	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q32.1	CALCRL, TFPI	rs840585-?		5E-22				NR [7428630] (imputed)	N
2020	chr2	188184803	188184804	rs13417165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.1		rs13417165-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2020	chr2	188186386	188186387	rs71017386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs71017386-CTT	NR	4E-8		0.017323	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
2020	chr2	188186386	188186387	rs71017386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs71017386-CTT	NR	5E-9		0.0168632	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
2020	chr2	188186386	188186387	rs71017386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs71017386-CTT	NR	3E-8		0.0180315	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
2020	chr2	188186386	188186387	rs71017386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs71017386-CTT	NR	6E-11		0.020314	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
2020	chr2	188190474	188190475	rs13384908	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q32.1	CALCRL	rs13384908-G	0.79673	4E-10		0.0142087	[0.0098-0.0187] unit decrease	NR [13737936] (imputed)	N
2020	chr2	188190474	188190475	rs13384908	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q32.1		rs13384908-?	NR	2E-11		0.0172199	[0.012-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
2020	chr2	188192360	188192361	rs7579959	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	2q32.1	NR	rs7579959-A	0.4837	1E-33		0.0214	[0.018-0.025] unit decrease	NR [~ 27400000] (imputed)	N
2020	chr2	188193663	188193664	rs115467773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1	rs115467773-T	NR	4E-8		0.0349427	[0.022-0.047] unit decrease	Affymetrix [319769] (imputed)	N
2020	chr2	188196468	188196469	rs840616	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q32.1	intergenic	rs840616-T	0.3542	3E-9		0.0402	[0.027-0.054] unit decrease	NR [8041861] (imputed)	N
2020	chr2	188196468	188196469	rs840616	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	2q32.1	intergenic	rs840616-?	NR	7E-7				Illumina [574919]	N
2020	chr2	188198445	188198446	rs840611	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q32.1	CALCRL	rs840611-A	0.637	2E-6		0.032	[0.018-0.046] unit increase	Affymetrix [7947838] (imputed)	N
2020	chr2	188211442	188211443	rs10931283	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q32.1	CALCRL	rs10931283-T	0.65	7E-10		6.18	z-score increase	Affymetrix [4314223] (imputed)	N
2020	chr2	188211609	188211610	rs10931284	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1, CALCRL	rs10931284-C	NR	6E-11		0.0208792	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
2020	chr2	188211609	188211610	rs10931284	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q32.1	AC007319.1, CALCRL	rs10931284-T	0.6202	9E-7		0.0291	[0.018-0.041] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2020	chr2	188211609	188211610	rs10931284	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2q32.1	AC007319.1	rs10931284-C	0.361893	2E-8		0.035311814	[0.023-0.048] unit decrease	Affymetrix [7288503] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1, CALCRL	rs10177093-G	NR	6E-10		0.0193906	[0.013-0.026] unit decrease	Affymetrix [323858] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	2q32.1	AC007319.1, CALCRL	rs10177093-G	NR	4E-9		0.0183996	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC007319.1, CALCRL	rs10177093-G	NR	5E-14		0.0215269	[0.016-0.027] unit decrease	Affymetrix [321169] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs10177093-?	NR	5E-29				Affymetrix [~ 8270000] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q32.1	NR	rs10177093-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
2020	chr2	188213818	188213819	rs10177093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q32.1		rs10177093-?	NR	4E-29				NR [~ 8900000] (imputed)	N
2021	chr2	188231432	188231433	rs16828937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1, CALCRL	rs16828937-C	NR	6E-10		0.0215511	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
2021	chr2	188231432	188231433	rs16828937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1, CALCRL	rs16828937-C	NR	8E-10		0.0214376	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
2021	chr2	188242368	188242369	rs62172372	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q32.1	AC007319.1, CALCRL	rs62172372-G	0.197285	2E-12		0.019795049	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2021	chr2	188242368	188242369	rs62172372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.1	NR	rs62172372-G	0.193134	5E-15				Affymetrix, Illumina [24649327] (imputed)	N
2021	chr2	188242368	188242369	rs62172372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q32.1	NR	rs62172372-G	0.199427	1E-17		0.020033	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2021	chr2	188242368	188242369	rs62172372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.1	NR	rs62172372-G	0.192606	2E-23				Affymetrix, Illumina [23472807] (imputed)	N
2021	chr2	188242368	188242369	rs62172372	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q32.1	CALCRL	rs62172372-G	0.19	6E-16		0.3365	[0.25-0.42] unit increase	Affymetrix [19941912] (imputed)	N
2021	chr2	188245438	188245439	rs61739909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs61739909-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
2021	chr2	188245438	188245439	rs61739909	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q32.1	NR	rs61739909-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2021	chr2	188249419	188249420	rs3821184	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q32.1	NR	rs3821184-G	0.3149	1E-17				NR [9056863] (imputed)	N
2021	chr2	188272459	188272460	rs6719550	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2q32.1		rs6719550-?	NR	3E-24				NR [9705931] (imputed)	N
2021	chr2	188276018	188276019	rs185008808	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	2q32.1	NR	rs185008808-?	NR	6E-6		0.8976	[0.51-1.29] unit increase	Illumina [at least 560000] (imputed)	N
2021	chr2	188276583	188276584	rs111917980	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	2q32.1		rs111917980-A	0.32	5E-6				NR [13131314] (imputed)	N
2021	chr2	188276583	188276584	rs111917980	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q32.1		rs111917980-A	0.32	2E-104		21.71	z score increase	Affymetrix [9061022] (imputed)	N
2021	chr2	188278202	188278203	rs17464221	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q32.1	NR	rs17464221-T	0.293	2E-9	(Frontal Pole)	1.0189157	[0.69-1.35] unit decrease	Affymetrix, Illumina [NR]	N
2021	chr2	188280895	188280896	rs67285003	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q32.1		rs67285003-T	0.32	6E-60		16.33	z score increase	Affymetrix [9061022] (imputed)	N
2021	chr2	188283060	188283061	rs11685426	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q32.1		rs11685426-A	0.32	3E-53		15.36	z score increase	Affymetrix [9061022] (imputed)	N
2021	chr2	188283060	188283061	rs11685426	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q32.1	NR	rs11685426-A	0.3143	1E-17				NR [9056863] (imputed)	N
2021	chr2	188289173	188289174	rs62172376	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q32.1	POGK, TADA1, ILDR2, MAEL	rs62172376-?		2E-10				NR [7428630] (imputed)	N
2021	chr2	188290968	188290969	rs13426120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q32.1		rs13426120-T	NR	8E-9		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2021	chr2	188293390	188293391	rs11894589	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q32.1	NR	rs11894589-T	NR	1E-9		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2021	chr2	188315233	188315234	rs10179705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q32.1	AC007319.1	rs10179705-A	0.291754	4E-20		0.022315735	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2021	chr2	188315233	188315234	rs10179705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q32.1	NR	rs10179705-A	0.294374	1E-24		0.021301	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2021	chr2	188318186	188318187	rs11674362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1	rs11674362-G	NR	4E-10		0.0202206	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
2021	chr2	188322024	188322025	rs112495120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q32.1		rs112495120-T	NR	7E-17		0.0218	[0.017-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2021	chr2	188323310	188323311	rs12987470	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q32.1	TFPI	rs12987470-A	0.705349	2E-8		0.0120515	[0.0078-0.0163] unit decrease	Affymetrix [NR] (imputed)	N
2021	chr2	188323310	188323311	rs12987470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q32.1		rs12987470-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2021	chr2	188324215	188324216	rs13425233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q32.1		rs13425233-A	NR	9E-11		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2021	chr2	188333063	188333064	rs4140885	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q32.1	TFPI	rs4140885-A	0.317	5E-8		0.217	[0.12-0.31] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
2021	chr2	188340348	188340349	rs8176547	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q32.1	NR	rs8176547-?		7E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	2q32.1	TFPI	rs7586970-T	0.6957	5E-8		0.0177	[0.011-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	2q32.1	TFPI	rs7586970-T	0.6949	4E-9		0.02	[0.013-0.027] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	2q32.1	TFPI	rs7586970-T	0.6983	3E-6		0.0155	[0.009-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	2q32.1	TFPI	rs7586970-T	0.6952	2E-7		0.0187	[0.012-0.026] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	2q32.1	TFPI	rs7586970-T	0.697	3E-12		0.0164	[0.012-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	2q32.1	TFPI	rs7586970-T	0.6952	2E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
2021	chr2	188343496	188343497	rs7586970	21378988	Coronary Artery Disease (C4D) Genetics Consortium	2011-03-06	Nat Genet	A genome-wide association study in Europeans and South Asians identifies five new loci for coronary artery disease.	Coronary heart disease	8,424 European ancestry cases, 7,268 European ancestry controls, 6,996 South Asian ancestry cases, 7,794 South Asian ancestry controls	18,049 European ancestry cases, 16,357 European ancestry controls, 3,359 South Asian ancestry cases, 2,828 South Asian ancestry controls	2q32.1	intergenic	rs7586970-?	NR	9E-6				Illumina [574919]	N
2021	chr2	188343761	188343762	rs116350534	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	2q32.1	TFPI	rs116350534-T	0.985372271	6E-6		1.4517832	[1.24-1.71]	Illumina [10439017] (imputed)	N
2021	chr2	188345321	188345322	rs8176526	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q32.1	NR	rs8176526-C	0.729598	2E-10		0.00781783	[0.0053-0.0104] unit increase	Affymetrix [16582621] (imputed)	N
2021	chr2	188345321	188345322	rs8176526	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q32.1	NR	rs8176526-C	0.729598	2E-6		0.00625028	[0.0035-0.009] unit increase	Affymetrix [16582614] (imputed)	N
2022	chr2	188350974	188350975	rs8176510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs8176510-T	NR	4E-12		0.0198239	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
2022	chr2	188350974	188350975	rs8176510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs8176510-T	NR	1E-11		0.0193784	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
2022	chr2	188353662	188353663	rs8176501	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 32)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q32.1		rs8176501-G	0.291761042	4E-9				Illumina [7417619] (imputed)	N
2022	chr2	188357178	188357179	rs8176479	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2q32.1		rs8176479-A	0.27	3E-12		0.1	unit decrease	Illumina [2093892] (imputed)	N
2022	chr2	188357178	188357179	rs8176479	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2q32.1		rs8176479-A	0.27	2E-11		0.1	unit decrease	Illumina [2398641] (imputed)	N
2022	chr2	188359672	188359673	rs2192823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs2192823-C	NR	1E-8		0.0169478	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
2022	chr2	188359672	188359673	rs2192823	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	2q32.1	AC007319.1, TFPI	rs2192823-C	NR	1E-8		0.01899	[0.012-0.026] unit increase	Affymetrix [323858] (imputed)	N
2022	chr2	188367874	188367875	rs2300412	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs2300412-A	NR	3E-9		0.0177142	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
2022	chr2	188375792	188375793	rs2349653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q32.1	AC007319.1, TFPI	rs2349653-G	NR	3E-9		0.0189994	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
2022	chr2	188379319	188379320	rs35612915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs35612915-A	NR	2E-11		0.022518	[0.016-0.029] unit decrease	Affymetrix [321114] (imputed)	N
2022	chr2	188379319	188379320	rs35612915	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q32.1	NR	rs35612915-A	0.2479	7E-8	(Rostral Middle Frontal)	22.219786	[14.15-30.29] unit decrease	Affymetrix, Illumina [NR]	N
2022	chr2	188398079	188398080	rs7573488	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q32.1	AC007319.1, TFPI	rs7573488-C	NR	1E-10		0.0214692	[0.015-0.028] unit decrease	Affymetrix [321169] (imputed)	N
2022	chr2	188465178	188465179	rs538838915	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.1	NR	rs538838915-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2023	chr2	188507223	188507224	rs77100355	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q32.1	TFPI	rs77100355-A	0.06	7E-6	(African American)	0.36	0.21-0.52 unit decrease	Illumina [NR] (imputed)	N
2023	chr2	188587071	188587072	rs35888925	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	2q32.1	intergenic	rs35888925-G	0.178723	9E-6		0.885068	[0.5-1.27] unit decrease	NR [7263501] (imputed)	N
2023	chr2	188601889	188601890	rs578003269	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2q32.1	LINC01090	rs578003269-T	0.0013	9E-6		1.03	[0.57-1.49] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2024	chr2	188722416	188722417	rs12615952	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.1	NR	rs12615952-?	NR	7E-7				Affymetrix [NR]	N
2025	chr2	188811896	188811897	rs77576211	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	2q32.1	NR	rs77576211-C	0.0955922	2E-6		1.1911854	[0.73-1.65] unit decrease	Illumina [at least 621854] (imputed)	N
2025	chr2	188869770	188869771	rs116183959	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q32.1	NR	rs116183959-C	0.1291	2E-6	(EA)	0.0439	[0.026-0.062] unit increase	Illumina [~ 11800000] (imputed)	N
2026	chr2	188986460	188986461	rs185659094	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q32.1		rs185659094-A	NR	9E-6		1.31036		Affymetrix, Illumina [62056310] (imputed)	N
2026	chr2	188994625	188994626	rs11904125	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs11904125-A	0.01045	3E-9	(ME1)	0.2362	NR unit decrease	Illumina [1671387] (imputed)	N
2026	chr2	188994625	188994626	rs11904125	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs11904125-A	0.01045	3E-8	(PRDX3)	2.744	NR unit increase	Illumina [1671387] (imputed)	N
2026	chr2	188994625	188994626	rs11904125	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.1	NR	rs11904125-A	0.01045	2E-9	(NIPSNAP1)	0.569	NR unit increase	Illumina [1671387] (imputed)	N
2027	chr2	189054303	189054304	rs185085918	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	2q32.1	NR	rs185085918-G	NR	2E-6		0.2694	[0.08-0.459] SD units decrease	NR [10700000] (imputed)	N
2027	chr2	189135883	189135884	rs62179650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q32.1	Intergenic	rs62179650-A	0.2989	2E-8	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2027	chr2	189135883	189135884	rs62179650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.1		rs62179650-A	0.2995	6E-13		0.0112	[0.0081-0.0143] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2027	chr2	189135883	189135884	rs62179650	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.1	Intergenic	rs62179650-A	0.2995	7E-13	(MTAG)	0.0104	[0.0077-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2028	chr2	189244550	189244551	rs142206003	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q32.1	GULP1	rs142206003-A	0.996	4E-6	(AA)	0.152	unit increase	Illumina [NR] (imputed)	N
2028	chr2	189244597	189244598	rs147910279	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q32.1	GULP1	rs147910279-T	0.997	4E-6	(AA)	0.151	unit increase	Illumina [NR] (imputed)	N
2029	chr2	189377508	189377509	rs6724428	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Hemoglobin A1c levels	up to 7,526 African ancestry individuals	NA	2q32.2		rs6724428-A	0.56	4E-9		0.0851263	unit increase	Affymetrix, Illumina [at least 24423923] (imputed)	N
2030	chr2	189500035	189500036	rs149966361	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q32.2	Intergenic	rs149966361-?		1E-6		1.42	[1.23-1.63]	Illumina [7645193] (imputed)	N
2031	chr2	189576343	189576344	rs139897186	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q32.2	AC079613.1	rs139897186-G	NR	2E-8		0.011198	[0.0073-0.0151] unit decrease	Affymetrix [18485882] (imputed)	N
2031	chr2	189579044	189579045	rs781289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q32.2		rs781289-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2031	chr2	189580147	189580148	rs1066769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.2		rs1066769-A	0.0311	1E-8		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2031	chr2	189580147	189580148	rs1066769	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.2	Intergenic	rs1066769-A	0.0311	3E-8	(MTAG)	0.0209	[0.013-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2031	chr2	189602414	189602415	rs185637423	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	2q32.2	NR	rs185637423-T	NR	9E-6		0.2477	[0.052-0.443] SD units increase	NR [10700000] (imputed)	N
2031	chr2	189631321	189631322	rs115755937	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC092598.1	rs115755937-?	NR	1E-8	(female)	0.527407	[NR] unit increase	Affymetrix [NR] (imputed)	N
2031	chr2	189634563	189634564	rs7587851	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q32.2	NR	rs7587851-?		1E-8	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2031	chr2	189643315	189643316	rs11901929	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q32.2	DIRC1	rs11901929-A	0.3499	1E-10		0.1184	[0.083-0.154] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2032	chr2	189718961	189718962	rs2675399	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.2	DIRC1	rs2675399-G	0.196	6E-6	(Adiponectin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
2032	chr2	189722729	189722730	rs16830721	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q32.2	Intergenic	rs16830721-?		2E-6		1.52	[1.27-1.81]	Illumina [7645193] (imputed)	N
2032	chr2	189747173	189747174	rs181572669	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	2q32.2	NR	rs181572669-G	NR	8E-6		0.3001	[0.076-0.524] SD units decrease	NR [10700000] (imputed)	N
2032	chr2	189750862	189750863	rs997277	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	2q32.2	DIRC1, COL3A1	rs997277-?	0.345	5E-8		1.63	[NR]	Illumina [3922209] (imputed)	N
2032	chr2	189762088	189762089	rs143568442	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	2q32.2	NR	rs143568442-?	NR	2E-9		6.032	NR z score decrease	Illumina [at least 830937] (imputed)	N
2032	chr2	189768284	189768285	rs11681740	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q32.2	COL3A1	rs11681740-C	0.960057	3E-8	(-386 ms)	0.0794023	[0.051-0.108] unit increase	Affymetrix [10000000] (imputed)	N
2032	chr2	189786826	189786827	rs77640143	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q32.2	Intergenic	rs77640143-T	0.993	4E-6		0.057	unit decrease	Illumina [NR] (imputed)	N
2033	chr2	189833033	189833034	rs12477499	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	2q32.2	LOC105373791	rs12477499-G	0.002965	2E-6		7.215	2.806-18.55	Illumina [164395]	N
2033	chr2	189842213	189842214	rs73047627	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	2q32.2	COL3A1	rs73047627-G	NR	4E-6		4.597	NR z score increase	Illumina [7839440] (imputed)	N
2033	chr2	189844060	189844061	rs2176267	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.2	COL5A2	rs2176267-?	NR	7E-6	(LPC 18:2)	0.5643827	[0.32-0.81] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2033	chr2	189845514	189845515	rs1914037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q32.2	COL3A1	rs1914037-G	0.266447	2E-9		0.015184956	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2033	chr2	189897393	189897394	rs11186	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q32.2	COL5A2	rs11186-?	NR	1E-6		2.79	[1.94-4.03]	Illumina [862198]	N
2033	chr2	189898846	189898847	rs78905646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q32.2		rs78905646-A	0.03	2E-38		12.97	z score increase	Affymetrix [9061022] (imputed)	N
2033	chr2	189898846	189898847	rs78905646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q32.2		rs78905646-A	0.03	5E-36		12.53	z score increase	Affymetrix [9061022] (imputed)	N
2033	chr2	189898846	189898847	rs78905646	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q32.2	NR	rs78905646-A	0.0247	1E-17				NR [9056863] (imputed)	N
2033	chr2	189899078	189899079	rs56339059	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q32.2		rs56339059-G	0.03	3E-25		10.39	z score increase	Affymetrix [9061022] (imputed)	N
2033	chr2	189899078	189899079	rs56339059	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q32.2	NR	rs56339059-G	0.0263	1E-17				NR [9056863] (imputed)	N
2033	chr2	189899078	189899079	rs56339059	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q32.2	NR	rs56339059-?	NR	3E-9	(right precentral)			NR [9227495] (imputed)	N
2033	chr2	189913272	189913273	rs12693527	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 26)	19,670 European ancestry individuals	NA	2q32.2		rs12693527-?	NR	5E-10				NR [9705931] (imputed)	N
2034	chr2	189975931	189975932	rs114613161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.2		rs114613161-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2034	chr2	189975957	189975958	rs4666771	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q32.2	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs4666771-?		5E-8				NR [7428630] (imputed)	N
2034	chr2	189979719	189979720	rs13391332	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q32.2	COL3A1, COL5A2, WDR75	rs13391332-?		3E-10				NR [7428630] (imputed)	N
2034	chr2	190013755	190013756	rs62182422	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	2q32.2	NR	rs62182422-T	NR	9E-6		1.4665		Affymetrix [8183964] (imputed)	N
2035	chr2	190063461	190063461	rs34159739	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q32.2	COL5A2	rs34159739-T	0.1118	7E-15		0.0231	[0.017-0.029] unit increase	Affymetrix [18391927] (imputed)	N
2035	chr2	190070167	190070168	rs73034872	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q32.2	NR	rs73034872-C	0.0148	8E-6	(EA)	0.1191	[0.067-0.172] unit decrease	Illumina [~ 11800000] (imputed)	N
2035	chr2	190078755	190078756	rs79700672	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	2q32.2	CROCC, MFAP2, ATP13A2, SDHB	rs79700672-?		8E-11				NR [7428630] (imputed)	N
2035	chr2	190078755	190078756	rs79700672	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2q32.2	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs79700672-?		2E-10				NR [7428630] (imputed)	N
2035	chr2	190109400	190109401	rs13011157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q32.2		rs13011157-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2035	chr2	190125786	190125787	rs114866784	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2q32.2	CPT2, C1orf123, MAGOH, LRP8	rs114866784-?		1E-9				NR [7428630] (imputed)	N
2035	chr2	190146209	190146210	rs114885387	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q32.2		rs114885387-G	NR	8E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2035	chr2	190150204	190150205	rs16831319	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q32.2	COL5A2	rs16831319-?	0.05900000000000005	1E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [8494288] (imputed)	N
2036	chr2	190266503	190266504	rs111730017	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GALNT10	5,363 Icelandic ancestry individuals	NA	2q32.2		rs111730017-A	0.01379	2E-14		0.128344	[0.095-0.161] unit increase	Illumina [7506463] (imputed)	N
2036	chr2	190284749	190284750	rs77798223	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q32.2	NR	rs77798223-?	NR	4E-8	(right precentral)			NR [9227495] (imputed)	N
2036	chr2	190287889	190287890	rs62187073	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	2q32.2	NR	rs62187073-T	NR	7E-6		1.4321		Affymetrix [8183964] (imputed)	N
2036	chr2	190305047	190305048	rs75116627	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q32.2	NR	rs75116627-T	0.0118	1E-6	(EA)	0.1517	[0.091-0.213] unit decrease	Illumina [~ 11800000] (imputed)	N
2037	chr2	190349910	190349911	rs17271071	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	2q32.2	NR	rs17271071-A		8E-6		0.3589	[0.2-0.52] unit increase	Illumina [NR] (imputed)	N
2037	chr2	190361910	190361911	rs12052498	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	2q32.2	WDR75, SLC40A1	rs12052498-G	NR	8E-7		0.091	[0.054-0.128] unit decrease	Illumina [27700000] (imputed)	N
2037	chr2	190363587	190363588	rs62187110	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q32.2	NR	rs62187110-G	0.308397	1E-14		0.015727	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2037	chr2	190367056	190367057	rs11674773	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q32.2		rs11674773-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2037	chr2	190375788	190375789	rs751663	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q32.2	NR	rs751663-G	0.598031	2E-10		0.013104	[0.0091-0.0171] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2037	chr2	190376434	190376435	rs10931422	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	2q32.2	SLC40A1	rs10931422-T	0.07	3E-6		1.62	[1.33-1.97] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2037	chr2	190378749	190378750	rs744653	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	2q32.2	WDR75, SLC40A1	rs744653-T	0.854	1E-11		0.068	[0.048-0.088] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
2037	chr2	190378749	190378750	rs744653	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (ferritin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	2q32.2	WDR75, SLC40A1	rs744653-T	0.854	8E-19		0.089	[0.069-0.109] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
2037	chr2	190391920	190391921	rs35078179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q32.2		rs35078179-C	NR	1E-10		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2037	chr2	190397020	190397021	rs66883355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs66883355-A	0.218117	1E-16				Affymetrix, Illumina [24332387] (imputed)	N
2037	chr2	190401728	190401729	rs11677494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q32.2		rs11677494-G	0.261127	4E-13		0.01818833	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2037	chr2	190407499	190407500	rs115380467	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	2q32.2	SLC40A1	rs115380467-?	NR	3E-12	(conditional)	0.181	NR mg/g increase	Affymetrix [9390170] (imputed)	N
2037	chr2	190418689	190418690	rs12693541	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	2q32.2	SLC40A1	rs12693541-C	0.119	3E-11		0.048	[0.063-0.034] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
2037	chr2	190418689	190418690	rs12693541	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	2q32.2	SLC40A1	rs12693541-C	0.119	2E-48		0.079	[0.069-0.09] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
2037	chr2	190423004	190423005	rs12478088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q32.2		rs12478088-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2037	chr2	190423095	190423096	rs12466208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q32.2		rs12466208-C	NR	1E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q32.2		rs112257498-T	NR	3E-13		0.0157	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q32.2	SLC40A1	rs112257498-T	0.613501	3E-11		0.01529459	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs112257498-T	0.635259	2E-10				Affymetrix, Illumina [24246363] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs112257498-T	0.637636	9E-17				Affymetrix, Illumina [20825802] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q32.2	NR	rs112257498-T	0.612764	9E-15		0.016088	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q32.2	SLC40A1	rs112257498-T	0.6135	6E-9		0.0213889	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2037	chr2	190432984	190432985	rs112257498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q32.2	SLC40A1	rs112257498-T	0.6134	1E-9		0.02233584	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2037	chr2	190436171	190436172	rs1371467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q32.2	SLC40A1	rs1371467-T	0.610901	3E-9		0.013931891	[0.0093-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
2037	chr2	190436171	190436172	rs1371467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q32.2	NR	rs1371467-T	0.6093	3E-11		0.013653	[0.0096-0.0177] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2037	chr2	190441316	190441317	rs2882877	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2q32.2	SLC40A1	rs2882877-G	0.3465	8E-9		0.0209684	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
2037	chr2	190444391	190444392	rs1123109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q32.2	SLC40A1	rs1123109-C	0.22556	3E-9		0.015674744	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2037	chr2	190446540	190446541	rs3811621	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q32.2	NR	rs3811621-G	0.729855	2E-11		0.014038	[0.0099-0.0181] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2038	chr2	190449525	190449526	rs10188680	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	2q32.2	SLC40A1	rs10188680-T	0.41	5E-8		1.07	[1.05-1.11]	Affymetrix, Illumina [15838848] (imputed)	N
2038	chr2	190451800	190451801	rs17198990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs17198990-C	0.215697	4E-12				Affymetrix, Illumina [24558453] (imputed)	N
2038	chr2	190452248	190452249	rs146361420	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs146361420-C	0.01045	3E-8	(VDAC1)	0.3086	NR unit increase	Illumina [1671387] (imputed)	N
2038	chr2	190452248	190452249	rs146361420	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs146361420-C	0.01045	1E-8	(SDHB)	0.1952	NR unit increase	Illumina [1671387] (imputed)	N
2038	chr2	190452585	190452586	rs6718798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q32.2		rs6718798-?	NR	2E-12				NR [~ 8900000] (imputed)	N
2038	chr2	190468112	190468113	rs5837155	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	2q32.2		rs5837155-CA	0.41	9E-18		0.0953	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2038	chr2	190511976	190511977	rs62183651	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs62183651-T	0.861614	8E-10				Affymetrix, Illumina [22063850] (imputed)	N
2038	chr2	190518609	190518610	rs7577758	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	2q32.2	ASNSD1	rs7577758-?	NR	4E-11		0.0606	NR mg/g increase	Affymetrix [9390170] (imputed)	N
2039	chr2	190607152	190607153	rs12053254	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.2	ANKAR, PMS1	rs12053254-G	0.125	6E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
2039	chr2	190643648	190643649	rs7606224	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q32.2	ORMDL1	rs7606224-?	0.011	2E-6		0.104	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
2039	chr2	190649315	190649316	rs5742933	25162662	Liao M	2014-08-27	PLoS One	Genome-wide association study identifies variants in PMS1 associated with serum ferritin in a Chinese population.	Ferritin levels	1,999 Han Chinese ancestry individuals	1,496 Chinese ancestry individuals	2q32.2	OSGEPL1, ORMDL1, ANKAR, PMS1	rs5742933-?	NR	2E-10		0.11	[0.07-0.14] unit decrease	Illumina [1940243] (imputed)	N
2039	chr2	190678544	190678545	rs5743030	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q32.2	PMS1	rs5743030-A	0.05	5E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
2039	chr2	190697338	190697339	rs5743077	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	2q32.2	PMS1	rs5743077-G	NR	2E-7		0.037	[0.023-0.051] unit increase	Illumina [27700000] (imputed)	N
2040	chr2	190771944	190771945	rs62184315	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	2q32.2	NR	rs62184315-T	0.84	4E-6		1.47	[1.31-1.63]	Illumina [4058415] (imputed)	N
2040	chr2	190772607	190772608	rs12475694	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		PMS1	rs12475694-T	0.28	9E-6				Illumina [1679420] (imputed)	N
2040	chr2	190827022	190827023	rs2053163	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q32.2		rs2053163-A	0.2933	8E-10		0.09622222	[0.066-0.126] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
2041	chr2	190946323	190946324	rs4853633	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	2q32.2	MSTN, C2orf88	rs4853633-A	0.7953	9E-6	(male)	0.122	[0.068-0.176] unit decrease	NR [NR] (imputed)	N
2042	chr2	191007033	191007034	rs11693404	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q32.2		rs11693404-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2042	chr2	191017738	191017739	rs785265	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	2q32.2	C2orf88, HIBCH, MSTN, INPP1	rs785265-A	NR	5E-6	(daytime resting duration)	0.08739	[0.05-0.125] unit increase	Affymetrix [7141204] (imputed)	N
2042	chr2	191049402	191049403	rs191148279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q32.2		rs191148279-A	NR	2E-8		0.058	[0.038-0.078] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2042	chr2	191049402	191049403	rs191148279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q32.2	C2orf88	rs191148279-A	0.013713	3E-10		0.06404954	[0.044-0.084] unit increase	Affymetrix [93095623] (imputed)	N
2042	chr2	191049402	191049403	rs191148279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q32.2	C2orf88	rs191148279-A	0.013714	3E-9		0.06059626	[0.041-0.081] unit increase	Affymetrix [93095623] (imputed)	N
2042	chr2	191049402	191049403	rs191148279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q32.2	C2orf88	rs191148279-A	0.013709	1E-11		0.06836098	[0.049-0.088] unit increase	Affymetrix [93095623] (imputed)	N
2042	chr2	191049402	191049403	rs191148279	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q32.2	C2orf88	rs191148279-A	0.013707	3E-11		0.06741052	[0.048-0.087] unit increase	Affymetrix [93095623] (imputed)	N
2042	chr2	191064752	191064753	rs6753459	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs6753459-T	0.2979	2E-21	(HIBCH)	0.1928	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191108869	191108870	rs59000197	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2q32.2		rs59000197-T	NR	6E-6	(GLM)	2.5473	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
2043	chr2	191113252	191113253	rs7590991	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs7590991-C	0.3885	4E-15	(HIBCH)	0.148	NR unit increase	Illumina [1671387] (imputed)	N
2043	chr2	191147226	191147227	rs115693937	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	2q32.2	NR	rs115693937-?	NR	3E-6		0.1455	[0.085-0.206] unit increase	Illumina [at least 560000] (imputed)	N
2043	chr2	191148346	191148347	rs2664252	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs2664252-G	0.4251	7E-36	(HIBCH)	0.2191	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191161844	191161845	rs2582743	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs2582743-C	0.2822	2E-20	(HIBCH)	0.1867	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191165428	191165429	rs60469543	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs60469543-T	0.2422	5E-15	(HIBCH)	0.167	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191176222	191176223	rs291444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIBCH	5,367 Icelandic ancestry individuals	NA	2q32.2		rs291444-T	0.3946	2E-258		0.604929	[0.57-0.64] unit decrease	Illumina [7506463] (imputed)	N
2043	chr2	191177004	191177005	rs291447	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q32.2	HIBCH	rs291447-A	0.3928125	3E-152	(HIBCH, 12396_19_3)	0.6305172	[0.59-0.68] unit decrease	Illumina [> 1000000] (imputed)	N
2043	chr2	191184475	191184476	rs1361284625	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs1361284625-A	0.4355	5E-37	(HIBCH)	0.224	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191188118	191188119	rs291468	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q32.2	HIBCH	rs291468-A	0.4	2E-14	(methylmalonate (MMA))	0.38	[0.28-0.48] unit decrease	Illumina [7750367] (imputed)	N
2043	chr2	191205498	191205499	rs13006833	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	2q32.2	HIBCH	rs13006833-G	0.39	2E-20	(1.067 ppm/1.049 ppm)	0.0293	[NR] unit increase	Affymetrix [620456]	N
2043	chr2	191209027	191209028	rs2067390	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	2q32.2	INPP1	rs2067390-A	0.0382	6E-6		4.74017	[2.68-6.8] unit increase	Illumina [6716580] (imputed)	N
2043	chr2	191226741	191226742	rs2067416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs2067416-G	0.3659	3E-14	(HIBCH)	0.1465	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191231502	191231503	rs4940	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs4940-A	0.2509	2E-16	(HIBCH)	0.1712	NR unit decrease	Illumina [1671387] (imputed)	N
2043	chr2	191233175	191233176	rs1247072343	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs1247072343-G	0.392	4E-14	(HIBCH)	0.1367	NR unit increase	Illumina [1671387] (imputed)	N
2044	chr2	191237007	191237009	rs1436910942	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs1436910942-C	0.27	7E-15	(HIBCH)	0.1567	NR unit decrease	Illumina [1671387] (imputed)	N
2044	chr2	191248846	191248847	rs75770358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q32.2		rs75770358-T	0.324875	2E-13		0.017979939	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2044	chr2	191262761	191262762	rs6434390	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	2q32.2	INPP1, MFSD6	rs6434390-G	NR	1E-9		1.13	[1.09-1.18]	Illumina [7461261] (imputed)	N
2044	chr2	191262924	191262925	rs10202630	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q32.2	MFSD6	rs10202630-C	0.480418	3E-9		0.05442924	[0.036-0.072] unit increase	Affymetrix [7288503] (imputed)	N
2044	chr2	191262924	191262925	rs10202630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q32.2		rs10202630-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2044	chr2	191275578	191275578	rs200461307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q32.2	MFSD6	rs200461307-TC	0.149489	4E-11		0.020976482	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2044	chr2	191275578	191275578	rs200461307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q32.2	NR	rs200461307-I	0.149258	7E-12		0.019672	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2044	chr2	191278340	191278341	rs6725814	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q32.2	NR	rs6725814-A	NR	6E-12		0.0176	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2044	chr2	191278340	191278341	rs6725814	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q32.2	MFSD6	rs6725814-G	0.261	3E-8		5.52	NR z score increase	Illumina [26237160] (imputed)	N
2044	chr2	191288832	191288833	rs4577309	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q32.2	NR	rs4577309-?		2E-13		0.0160037	[0.012-0.02] unit increase	Affymetrix [19400418] (imputed)	N
2044	chr2	191288832	191288833	rs4577309	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2q32.2	FLJ20160	rs4577309-A	0.468107	1E-9		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
2044	chr2	191288832	191288833	rs4577309	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	2q32.2	FLJ20160	rs4577309-A	0.468107	9E-9		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
2044	chr2	191343762	191343763	rs12613807	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q32.2	NR	rs12613807-C	0.4449	4E-11		0.001483	[0.001-0.0019] unit increase	Affymetrix [NR] (imputed)	N
2044	chr2	191357693	191357694	rs35095338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q32.2		rs35095338-T	NR	3E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2045	chr2	191368920	191368921	rs10209172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q32.2		rs10209172-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2045	chr2	191398837	191398838	rs61730953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q32.2		rs61730953-T	NR	5E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2045	chr2	191413862	191413863	rs34825614	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs34825614-G	NR	9E-6		0.1642	[0.091-0.237] unit increase	Illumina [NR] (imputed)	N
2045	chr2	191430740	191430741	rs4371384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q32.2		rs4371384-G	NR	1E-10		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2045	chr2	191432138	191432139	rs9630991	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,576 European ancestry cases, 8,039 European ancestry controls	NA	2q32.2	NEMP2, NAB1	rs9630991-A	NR	7E-9		0.851	[0.8-0.91]	NR [NR] (imputed)	N
2045	chr2	191432138	191432139	rs9630991	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	2q32.2	NEMP2, NAB1	rs9630991-A	NR	1E-13		0.85	[0.81-0.89]	Illumina [NR] (imputed)	N
2045	chr2	191432138	191432139	rs9630991	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	2q32.2	NEMP2, NAB1	rs9630991-A	NR	3E-6		0.85	[0.78-0.92]	Illumina [5719137] (imputed)	N
2045	chr2	191435715	191435716	rs34417560	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	2q32.2	TMEM194B	rs34417560-?	0.24760000000000004	2E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
2045	chr2	191439590	191439591	rs7592578	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q32.2	TMEM194B	rs7592578-T	0.19	1E-11		0.24	[0.16-0.32] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2045	chr2	191442868	191442869	rs62182887	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	2q32.2	TMEM194B, NAB1, MFSD6, INPP1	rs62182887-A	NR	3E-6	(daytime napping, weekdays)	1.15	[0.67-1.63] unit decrease	Affymetrix [7141204] (imputed)	N
2045	chr2	191446690	191446691	rs7569128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q32.2		rs7569128-A	NR	5E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2045	chr2	191466531	191466532	rs6724607	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q32.2	intergenic	rs6724607-G	0.469	7E-7	(EA, initial)	0.231	[0.14-0.32] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2045	chr2	191466531	191466532	rs6724607	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q32.2	intergenic	rs6724607-G	0.469	3E-7		0.163	[0.1-0.23] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		9E-6	(EA)	0.294	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		3E-7		0.322	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		5E-13		0.311	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		3E-6	(EA)	0.209	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		1E-6		0.202	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		1E-10		0.185	unit increase	Affymetrix [at least 2696785] (imputed)	N
2045	chr2	191494410	191494411	rs6434404	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q32.2	TMEM194B, NAB1	rs6434404-A		2E-6		0.125	unit increase	Affymetrix [at least 2696785] (imputed)	N
2046	chr2	191508873	191508873	rs142457531	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q32.2	NAB1	rs142457531-CTGAA	0.2463	3E-9		0.2282	[0.15-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
2046	chr2	191511307	191511308	rs11887329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q32.2	NR	rs11887329-G	NR	7E-13		0.0213	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
2046	chr2	191513243	191513243	rs71027236	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2q32.2	NR	rs71027236-T	0.775259	1E-8		0.0203689	[0.013-0.028] unit increase	Affymetrix [16577313] (imputed)	N
2046	chr2	191521440	191521441	rs929566	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q32.2	NAB1	rs929566-C	NR	6E-6		1.0567	NR	Affymetrix, Illumina [8278136] (imputed)	N
2046	chr2	191533861	191533862	rs11895262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q32.2	NR	rs11895262-T	0.268949	2E-10		0.013736	[0.0095-0.018] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2046	chr2	191534371	191534372	rs16832798	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	2q32.2	NAB1	rs16832798-C	0.14	5E-9		1.18		Illumina [4723365]	N
2046	chr2	191535575	191535576	rs2286896	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		2q32.2	NAB1	rs2286896-G	0.13	4E-6		1.35	[1.19-1.53]	Illumina [90536]	N
2046	chr2	191538561	191538562	rs10931468	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	2q32.2	NAB1	rs10931468-A	0.128	1E-8		1.1452478		Illumina [252970]	N
2046	chr2	191538561	191538562	rs10931468	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q32.2	NAB1	rs10931468-A	NA	2E-8				Illumina [252970]	N
2046	chr2	191538561	191538562	rs10931468	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	2q32.2	STAT4	rs10931468-A	0.12	2E-19		1.5	[1.37-1.64]	Illumina [507467]	N
2046	chr2	191541365	191541366	rs56346965	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		2q32.2	NAB1	rs56346965-C	NR	7E-7		0.09	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
2046	chr2	191543961	191543962	rs3771317	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	2q32.2		rs3771317-C	NR	2E-22		0.289503	[0.23-0.35] unit increase	NR [5054572] (imputed)	N
2046	chr2	191543961	191543962	rs3771317	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	2q32.2	NAB1, STAT1, STAT4	rs3771317-C	0.14	2E-14		1.4084507	NR	Illumina [1143634] (imputed)	N
2046	chr2	191564756	191564757	rs744600	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	2q32.2	NAB1	rs744600-?	NR	7E-11		1.1363636	[1.09-1.18]	Illumina [6450125] (imputed)	N
2046	chr2	191567540	191567541	rs62179714	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q32.2	NAB1	rs62179714-G	0.722576	5E-14		0.0154014	[0.011-0.019] unit increase	NR [13737936] (imputed)	N
2046	chr2	191578171	191578172	rs11677484	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q32.2		rs11677484-T	0.2531	6E-10		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2046	chr2	191578171	191578172	rs11677484	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q32.2	B1, GLS	rs11677484-T	0.2574	1E-9		1.0231643		Affymetrix [11880941] (imputed)	N
2046	chr2	191583506	191583507	rs887696	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	2q32.2	STAT4	rs887696-C	0.34	3E-8		5.54	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
2046	chr2	191585391	191585392	rs1465305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.2		rs1465305-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2046	chr2	191585391	191585392	rs1465305	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q32.2		rs1465305-?	NR	8E-12		0.0141665	[0.0098-0.0186] unit increase	Affymetrix [20259828] (imputed)	N
2046	chr2	191585948	191585949	rs2356123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q32.2		rs2356123-G	NR	8E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2046	chr2	191595849	191595850	rs10203824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q32.2		rs10203824-?	NR	5E-13				NR [~ 8900000] (imputed)	N
2047	chr2	191660827	191660828	rs35917062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q32.2		rs35917062-?	NR	9E-23				NR [~ 8900000] (imputed)	N
2047	chr2	191680329	191680330	rs148894474	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	2q32.2		rs148894474-C	0.0324	3E-6		2.171	[1.567-3.00699999999999]	Affymetrix [7975321] (imputed)	N
2047	chr2	191691481	191691482	rs13033350	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2q32.2	NR	rs13033350-A	NR	1E-6		0.01101	[0.0066-0.0155] unit decrease	Illumina [~ 540852]	N
2047	chr2	191701184	191701185	rs66721975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.2		rs66721975-A	0.2903	2E-8		0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2047	chr2	191701184	191701185	rs66721975	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.2	Intergenic	rs66721975-A	0.2903	2E-8	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2047	chr2	191720369	191720370	rs1921911	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q32.2	NR	rs1921911-C	0.7461	6E-31		0.0255	[0.021-0.03] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2047	chr2	191723931	191723932	rs1921910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q32.2		rs1921910-G	0.259858	5E-20		0.02373726	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2047	chr2	191723931	191723932	rs1921910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.2	NR	rs1921910-T	0.744114	3E-28				Affymetrix, Illumina [17210439] (imputed)	N
2047	chr2	191726608	191726609	rs6434426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q32.2		rs6434426-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2047	chr2	191728043	191728044	rs11893307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q32.2	intergenic	rs11893307-A	0.2598	3E-10		0.02585599	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191729939	191729939	rs111813727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q32.2		rs111813727-CA	0.080454	1E-11		0.028595358	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2047	chr2	191737463	191737464	rs4853525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q32.2	intergenic	rs4853525-C	0.3682	1E-9		0.02257269	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191737463	191737464	rs4853525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2q32.2	intergenic	rs4853525-C	0.3682	7E-10		0.02302138	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191737463	191737464	rs4853525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q32.2	intergenic	rs4853525-C	0.3682	9E-12		0.02538071	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191737463	191737464	rs4853525	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q32.2	intergenic	rs4853525-C	0.3682	3E-12		0.02604801	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191740995	191740996	rs62182473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	2q32.2		rs62182473-C	0.734719	2E-51		0.0707191	[0.062-0.08] unit increase	NR [11722792] (imputed)	N
2047	chr2	191741196	191741197	rs11687659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q32.2	GLS	rs11687659-A	0.344083	6E-24		0.023819389	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2047	chr2	191741196	191741197	rs11687659	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2q32.2	GLS	rs11687659-A	0.3445	5E-11		0.02456787	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2047	chr2	191746232	191746233	rs78219026	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.2	NR	rs78219026-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2047	chr2	191746747	191746748	rs61613340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q32.2	AC005540.3, GLS	rs61613340-T	NR	3E-8		0.0290428	[0.019-0.039] unit decrease	Affymetrix [319769] (imputed)	N
2047	chr2	191746747	191746748	rs61613340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q32.2	AC005540.3, GLS	rs61613340-T	NR	2E-8		0.029562	[0.019-0.04] unit decrease	Affymetrix [319769] (imputed)	N
2047	chr2	191749704	191749705	rs74809942	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q32.2	NR	rs74809942-T	0.9169	1E-8		0.0204	[0.013-0.027] unit increase	NR [~ 27400000] (imputed)	N
2048	chr2	191759072	191759073	rs766899706	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q32.2	GLS	rs766899706-G	0.684	6E-12		0.0139	[0.01-0.0178] unit decrease	Affymetrix [18391927] (imputed)	N
2048	chr2	191781168	191781169	rs2355570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q32.2		rs2355570-G	NR	6E-16		0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2048	chr2	191807345	191807346	rs11683679	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q32.2		rs11683679-A	0.44	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
2048	chr2	191807345	191807346	rs11683679	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q32.2	NR	rs11683679-A	0.4512	3E-9				NR [9056863] (imputed)	N
2048	chr2	191808934	191808934	rs398105120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q32.2	GLS	rs398105120-AT	0.617357	9E-17		0.019532098	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2048	chr2	191808934	191808934	rs398105120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q32.2	GLS	rs398105120-AT	0.617369	9E-18		0.020175654	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2048	chr2	191808934	191808934	rs398105120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q32.2	GLS	rs398105120-AT	0.617325	9E-24		0.023480156	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2048	chr2	191808934	191808934	rs398105120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q32.2	GLS	rs398105120-AT	0.617325	4E-25		0.024214229	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2048	chr2	191815037	191815038	rs1607187	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.2	STAT1	rs1607187-?	NR	3E-6	(threonine)	0.15605024	[0.091-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
2048	chr2	191832263	191832264	rs12468579	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q32.2		rs12468579-G	0.45	7E-9		5.8	z score increase	Affymetrix [9061022] (imputed)	N
2048	chr2	191832263	191832264	rs12468579	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2q32.2	GLS, STAT1	rs12468579-?	NR	5E-8	(AA)	4.1	[2.53-5.67] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2048	chr2	191832491	191832492	rs12693588	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q32.2		rs12693588-C	0.41	1E-13		7.4	z score increase	Affymetrix [9061022] (imputed)	N
2048	chr2	191836689	191836690	rs7565237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q32.2		rs7565237-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2048	chr2	191841878	191841879	rs7597768	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q32.2	STAT1	rs7597768-?	NR	1E-8		0.016118048	[0.011-0.022] unit increase	Illumina [27896057] (imputed)	N
2048	chr2	191843829	191843830	rs2280235	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q32.2	STAT1	rs2280235-G	0.259091	7E-10		0.018251	[0.012-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2048	chr2	191845724	191845725	rs1547550	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	2q32.2	NR	rs1547550-C	0.36	1E-10		0.022	[0.014-0.03] z score decrease	Affymetrix [up to 10400000] (imputed)	N
2048	chr2	191851484	191851485	rs2066799	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.2	NR	rs2066799-T	0.04181	3E-8	(COX6B1)	0.02038	NR unit increase	Illumina [1671387] (imputed)	N
2048	chr2	191856426	191856427	rs60976990	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q32.2	STAT1	rs60976990-T	0.0725	2E-9		0.04537308	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
2048	chr2	191869910	191869911	rs11693463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q32.2		rs11693463-G	NR	8E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2048	chr2	191874246	191874247	rs45539732	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	2q32.2	STAT4	rs45539732-?	NR	7E-8	(conditioned on rs10174238)	1.53		Illumina [123003]	N
2049	chr2	191902183	191902184	rs6749371	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q32.2	STAT4	rs6749371-?		7E-9		1.2320741		Illumina [252970]	N
2049	chr2	191902183	191902184	rs6749371	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q32.2	STAT4	rs6749371-T	NA	4E-8				Illumina [252970]	N
2049	chr2	191902183	191902184	rs6749371	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2q32.2	STAT4	rs6749371-?	NR	7E-11		0.84		Illumina [109572]	N
2049	chr2	191902757	191902758	rs3821236	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	2q32.2	STAT4	rs3821236-A	0.2	2E-23		1.31		Illumina [4723365]	N
2049	chr2	191902757	191902758	rs3821236	21779181	Gorlova O	2011-07-14	PLoS Genet	Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy.	Systemic sclerosis	2,296 European ancestry cases, 5,172 European ancestry controls	3,175 European ancestry cases, 4,210 European ancestry controls	2q32.2	STAT4	rs3821236-?	NR	9E-8	(IcSSc)	1.31	[1.19-1.48]	Illumina [NR] (imputed)	N
2049	chr2	191902757	191902758	rs3821236	20383147	Radstake TR	2010-04-11	Nat Genet	Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus.	Systemic sclerosis	2,296 European ancestry cases, 5,171 European ancestry controls	2,753 European ancestry cases, 4,569 European ancestry controls	2q32.2	STAT4	rs3821236-A	0.20	3E-9		1.3	[1.19-1.41]	Illumina [279621]	N
2049	chr2	191902757	191902758	rs3821236	19165918	Graham RR	2008-08-01	Nat Genet	Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.	Systemic lupus erythematosus	431 European ancestry cases, 2,155 European ancestry controls	447 European ancestry trios, 293 trios	2q32.2	STAT4	rs3821236-?	0.19	8E-11		1.49	[NR]	Affymetrix [313238]	N
2049	chr2	191912539	191912540	rs12465689	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs12465689-T	NR	5E-10		0.2329	[0.16-0.31] unit increase	Illumina [NR] (imputed)	N
2049	chr2	191913033	191913034	rs6715106	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2q32.2	STAT4	rs6715106-?	0.942	8E-9		1.2658228		Illumina [139553]	N
2049	chr2	191917316	191917317	rs4853540	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		2q32.2	STAT4	rs4853540-?	0.78	2E-6		1.2048193		Illumina [90536]	N
2049	chr2	191921873	191921874	rs11893432	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	2q32.2	STAT1	rs11893432-?	NR	4E-11	(EA)			Illumina [126270]	N
2049	chr2	191921873	191921874	rs11893432	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	2q32.2	STAT1	rs11893432-?	NR	2E-8				Illumina [126270]	N
2049	chr2	191921873	191921874	rs11893432	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	2q32.2	STAT4	rs11893432-?		3E-12		1.44		Illumina [126270]	N
2049	chr2	191921873	191921874	rs11893432	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q32.2	STAT4	rs11893432-?	NR	2E-11				Illumina [129464] (imputed)	N
2049	chr2	191931463	191931464	rs1517352	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q32.2	NR	rs1517352-C	0.6	2E-9	(EA)	1.0808891		Affymetrix, Illumina [~ 9000000] (imputed)	N
2049	chr2	191931463	191931464	rs1517352	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q32.2	NR	rs1517352-C	0.6	4E-14	(EA)	1.0809946		Affymetrix, Illumina [~ 9000000] (imputed)	N
2049	chr2	191931463	191931464	rs1517352	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q32.2	NR	rs1517352-C	0.6	1E-10	(EA)	1.0832976	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2049	chr2	191931463	191931464	rs1517352	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q32.2	STAT1, STAT4	rs1517352-C	0.6	3E-11		1.077	[1.046-1.109]	Affymetrix, Illumina [1230000] (imputed)	N
2049	chr2	191933253	191933254	rs13426947	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2q32.2	STAT4	rs13426947-A	0.2	4E-17		1.17	[1.13-1.21]	Illumina [133816] (imputed)	N
2049	chr2	191933253	191933254	rs13426947	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q32.2	STAT4	rs13426947-A	0.19	8E-9		1.1663		Illumina [129464] (imputed)	N
2049	chr2	191933253	191933254	rs13426947	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q32.2	STAT4	rs13426947-A	0.19	7E-10		1.1533		Illumina [129464] (imputed)	N
2049	chr2	191933282	191933283	rs13389408	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	2q32.2	STAT4	rs13389408-C	NR	3E-17		1.27	[1.20-1.34]	Illumina [6450125] (imputed)	N
2049	chr2	191935803	191935804	rs10168266	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	2q32.2	STAT1, STAT4	rs10168266-A	0.366	4E-13		1.31	[1.22-1.41]	Illumina [776516]	N
2049	chr2	191935803	191935804	rs10168266	24097066	Li Y	2013-10-06	Nat Genet	A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjogren's syndrome at 7q11.23.	Sjogren's syndrome	542 Han Chinese ancestry cases, 1,050 Han Chinese ancestry controls	1,303 Han Chinese ancestry cases, 2,727 Han Chinese ancestry controls	2q32.2	STAT4	rs10168266-T	0.3357	2E-17		1.44	[1.32-1.57]	Affymetrix [556134]	N
2049	chr2	191940450	191940451	rs7601754	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA	2q32.2	NR	rs7601754-NA	NR	1E-10				Illumina [NR] (imputed)	N
2049	chr2	191940450	191940451	rs7601754	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	2q32.2	STAT4	rs7601754-?	NR	3E-11		1.32	[NR]	Illumina [NR]	N
2049	chr2	191943271	191943272	rs3024921	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		STAT1, STAT4	rs3024921-A	0.06	3E-18		1.62	[1.45-1.80]	Illumina [237619] (imputed)	N
2049	chr2	191943271	191943272	rs3024921	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA		NR	rs3024921-A		5E-11		1.75	[1.48-2.07]	Illumina [109812]	N
2049	chr2	191943741	191943742	rs11889341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sjogren's syndrome	1,296 European ancestry cases, 482,717 European ancestry controls, 303 East Asian ancestry cases, 175,599 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	7E-12		0.2901	[0.21-0.37] unit increase	Affymetrix, Illumina [25844664] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	3E-17		0.1232	[0.095-0.152] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	7E-11		0.1245	[0.087-0.162] unit increase	Affymetrix, Illumina [25797652] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	3E-31		0.251604	[0.21-0.29] unit increase	NR [2787054] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	2E-12		0.289575	[0.21-0.37] unit increase	NR [5275424] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	2q32.2		rs11889341-?	NR	2E-7		0.045	NR unit decrease	NR [5896510] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2q32.2		rs11889341-T	NR	4E-30		1.16	[1.13-1.19]	NR [13810676] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q32.2	STAT4	rs11889341-T	0.348	5E-123		1.407	[1.38-1.43]	Illumina [11270530] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	2q32.2	STAT4	rs11889341-T	NR	2E-19		1.26	[1.2-1.33]	Illumina [7461261] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	2q32.2	STAT4	rs11889341-?		3E-13		1.22	[1.15-1.28]	Illumina [NR] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q32.2	STAT4	rs11889341-T	0.222787	3E-39		0.14335068	[0.12-0.16] unit increase	Affymetrix [7288503] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q32.2	STAT4	rs11889341-T	NR	5E-20		0.146886	[0.098-0.195] unit increase	Illumina [8380626] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q32.2	STAT4	rs11889341-T	0.3	6E-9	(East Asian)	0.15935	[0.11-0.21] unit increase	Illumina [8380626] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q32.2	STAT4	rs11889341-T	0.23	6E-12	(EA)	0.12382	[0.089-0.159] unit increase	Illumina [8380626] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q32.2	STAT4	rs11889341-?	NR	6E-16	(Hispanic)	1.48	[1.34-1.63]	Illumina [at least 5000000] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, up to 51 African ancestry cases, up to 164 Hispanic/Native american cases, up to 570 Asian ancestry cases, up to 59 cases, 1,546 European ancestry controls, 495 African ancestry controls, 237 Hispanic/Native American controls, 306 Asian ancestry controls, 148 controls.	NA	2q32.2	STAT4	rs11889341-?		9E-10		1.4	[1.26-1.56]	Illumina [1444884]	N
2049	chr2	191943741	191943742	rs11889341	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2q32.2	STAT4	rs11889341-?	0.339	4E-22	(Chinese)	1.56	[NR]	NR [6344733] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2q32.2	STAT4	rs11889341-?	0.216	1E-65	(EA)	1.75	[NR]	NR [6344733] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	26606652	Alarcon-Riquelme ME	2015-11-25	Arthritis Rheumatol	Genome-Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture.	Systemic lupus erythematosus	862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls	NA	2q32.2	STAT4	rs11889341-T	0.407	7E-13		1.5	[1.36-1.66]	Illumina [580483] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	2q32.2	STAT4	rs11889341-T		2E-76		1.68	[NR]	Illumina [> 644674] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	2q32.2	STAT4	rs11889341-T		6E-122		1.73	(1.65-1.81]	Illumina [644674]	N
2049	chr2	191943741	191943742	rs11889341	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.2	STAT4	rs11889341-T	0.3	2E-8	(East Asian)	1.16	[1.10-1.22]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.2	STAT4	rs11889341-T	0.25	4E-19		1.13	[1.10-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2049	chr2	191943741	191943742	rs11889341	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q32.2	STAT4	rs11889341-T	0.23	1E-12	(EA)	1.12	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2049	chr2	191946321	191946322	rs6736175	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	2q32.2	STAT4	rs6736175-C		9E-17	(conditional)	1.24	[NR]	Illumina [> 644674] (imputed)	N
2049	chr2	191948986	191948986	rs71403211	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q32.2	NR	rs71403211-T	0.884	3E-49		1.462	[1.41-1.51]	Illumina [11270530] (imputed)	N
2049	chr2	191953997	191953998	rs12612769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q32.2		rs12612769-C	NR	9E-9		0.1449	[0.096-0.194] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
2049	chr2	191953997	191953998	rs12612769	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	2q32.2		rs12612769-?	NR	2E-7		0.044	NR unit increase	NR [5890016] (imputed)	N
2049	chr2	191953997	191953998	rs12612769	26663301	Lessard CJ	2016-05-01	Arthritis Rheumatol	Identification of a Systemic Lupus Erythematosus Risk Locus Spanning ATG16L2, FCHSD2, and P2RY2 in Koreans.	Systemic lupus erythematosus	1,174 Korean ancestry cases, 4,246 Korean ancestry controls	739 Korean ancestry cases,  677 Chinese ancestry cases,  436 Korean ancestry controls, 709 Chinese ancestry controls	2q32.2	STAT4	rs12612769-?	NR	2E-19		1.59	[1.43-1.75]	Illumina [NR]	N
2049	chr2	191954815	191954816	rs13390936	29523850	Gilchrist JJ	2018-03-09	Nat Commun	Risk of nontyphoidal Salmonella bacteraemia in African children is modified by STAT4.	Nontyphoidal Salmonella bacteraemia	180 Kenyan ancestry cases, 2,677 Kenyan ancestry controls	171 Sub-Saharan African ancestry cases, 563 Sub-Saharan African ancestry controls	2q32.2	STAT4	rs13390936-T	NR	9E-10	(recessive model)	7.61	[3.98-14.55]	Affymetrix [at least 4669480] (imputed)	N
2049	chr2	191955189	191955192	rs10553577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systemic lupus erythematosus	647 European ancestry cases, 482,264 European ancestry controls, 317 East Asian ancestry cases, 175,937 East Asian ancestry controls	NA	2q32.2		rs10553577-T	NR	6E-13		0.3835	[0.28-0.49] unit increase	Affymetrix, Illumina [25844568] (imputed)	N
2049	chr2	191955189	191955192	rs10553577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	2q32.2		rs10553577-T	0.317551876	4E-9		0.12793025	[0.085-0.171] unit increase	Illumina [13429970] (imputed)	N
2049	chr2	191955189	191955192	rs10553577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	2q32.2		rs10553577-T	0.318321155	2E-8		0.14964324	[0.097-0.202] unit increase	Illumina [13134967] (imputed)	N
2049	chr2	191955189	191955192	rs10553577	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Rheumatoid arthritis	4,199 Japanese ancestry cases, 208,254 Japanese ancestry controls	NA	2q32.2		rs10553577-T	0.319629318	1E-9		1.157601	[1.10455337-1.213196202]	Illumina [8919992] (imputed)	N
2049	chr2	191955189	191955192	rs10553577	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	2q32.2	STAT4	rs10553577-T	0.23	7E-15		1.43	[1.26-1.62]	Illumina [648937]	N
2049	chr2	191955205	191955208	rs199559999	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2q32.2	STAT4	rs199559999-?	NR	3E-7		1.158	NR	Illumina [8966411] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q32.2		rs7574865-G	NR	2E-29		0.1321	[0.11-0.16] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	33069728	Pu W	2020-10-15	J Invest Dermatol	Exome-wide association analysis suggests LRP2BP as a susceptibility gene for endothelial injury in systemic sclerosis in Han Chinese population.	Systemic sclerosis	527 Han Chinese ancestry cases, 5,024 Han Chinese ancestry controls	479 Han Chinese ancestry cases, 1,096 Han Chinese ancestry controls	2q32.2	STAT4	rs7574865-T	0.3284	4E-12		1.43	[1.29-1.58]	Illumina [84228]	N
2049	chr2	191964632	191964633	rs7574865	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	0.223	3E-7		1.4094732		Illumina [252970]	N
2049	chr2	191964632	191964633	rs7574865	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	0.227	9E-8		1.1145258		Illumina [252970]	N
2049	chr2	191964632	191964633	rs7574865	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	NA	3E-9				Illumina [252970]	N
2049	chr2	191964632	191964633	rs7574865	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	2q32.2	STAT4	rs7574865-T		5E-10		0.332	[0.23-0.44] unit increase	Illumina [3610917] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	2q32.2	STAT4	rs7574865-T		4E-7	(East Asian)	0.375	[0.23-0.52] unit increase	Illumina [3610917] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	2q32.2	STAT4	rs7574865-?		2E-8		1.51	[ 1.31-1.75]	Illumina [1444884]	N
2049	chr2	191964632	191964633	rs7574865	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	0.33	5E-9		1.5083	[1.41-1.62]	Illumina [NR]	N
2049	chr2	191964632	191964633	rs7574865	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	2q32.2	STAT4	rs7574865-T	0.34	1E-21		1.63		Illumina [2100739] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	23242368	Jiang DK	2012-12-16	Nat Genet	Genetic variants in STAT4 and HLA-DQ genes confer risk of hepatitis B virus-related hepatocellular carcinoma.	Hepatocellular carcinoma in hepatitis B infection	1,161 Chinese ancestry cases, 1,353 Chinese ancestry controls	4,319 Chinese ancestry cases, 4,966 Chinese ancestry controls	2q32.2	STAT4	rs7574865-G	0.67	2E-10		1.21	[1.14-1.28]	Illumina [1672517] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	23053960	Lee YH	2012-10-07	Mol Biol Rep	Genome-wide pathway analysis of genome-wide association studies on systemic lupus erythematosus and rheumatoid arthritis.	Systemic lupus erythematosus	1,527 European ancestry cases, 3,421 European ancestry controls,	NA	2q32.2	STAT4	rs7574865-T	NR	4E-14		1.477	[1.335-1.634]	Illumina [737984]	N
2049	chr2	191964632	191964633	rs7574865	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	2q32.2	STAT4	rs7574865-T	NR	1E-6		1.35	[1.19-1.52]	Affymetrix [421245]	N
2049	chr2	191964632	191964633	rs7574865	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	2q32.2	STAT1, STAT4	rs7574865-A	0.22	1E-13	(conditioned on rs3024921)	1.31	[1.22-1.40]	Illumina [237619] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	21750679	Allanore Y	2011-07-07	PLoS Genet	Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.	Systemic sclerosis	564 European ancestry cases, 1,776 European ancestry controls	1,682 European ancestry cases, 3,926 European ancestry controls	2q32.2	STAT4	rs7574865-T	0.22	2E-13		1.38	[1.27-1.50]	Illumina [489814]	N
2049	chr2	191964632	191964633	rs7574865	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	0.28	8E-6	(case-only)	1.41	[1.21-1.63]	Illumina [421318] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	2q32.2	STAT4	rs7574865-T	0.23	2E-20	(anti-dsDNA +)	1.77	[1.57-1.99]	Illumina [421318] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	2q32.2	STAT4	rs7574865-T	NR	4E-10				Illumina [472854]	N
2049	chr2	191964632	191964633	rs7574865	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q32.2	STAT4	rs7574865-T	0.22	3E-7		1.16	[1.10-1.23]	Affymetrix, Illumina [~ 2716259] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	20453841	Kochi Y	2010-05-09	Nat Genet	A regulatory variant in CCR6 is associated with rheumatoid arthritis susceptibility.	Rheumatoid arthritis	2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls	4,768 Japanese ancestry cases, 17,359 Japanese ancestry controls	2q32.2	STAT4	rs7574865-T	0.33	2E-6		1.17	[1.10-1.25]	Illumina [393217]	N
2049	chr2	191964632	191964633	rs7574865	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	2q32.2	STAT4	rs7574865-T	0.23	1E-41		1.57	[1.49-1.69]	Illumina [~ 2100000] (imputed)	N
2049	chr2	191964632	191964633	rs7574865	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	2q32.2	STAT4	rs7574865-A	0.33	5E-42		1.51	[1.43-1.61]	Illumina [493955]	N
2049	chr2	191964632	191964633	rs7574865	18204098	Hom G	2008-01-20	N Engl J Med	Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.	Systemic lupus erythematosus	1,311 European ancestry cases, 3,340 European ancestry controls	793 European ancestry cases, 857 European ancestry controls	2q32.2	STAT4	rs7574865-T	0.23	9E-14				Illumina [502033]	N
2049	chr2	191966451	191966452	rs7568275	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2q32.3	STAT4	rs7568275-G	0.225	5E-39		1.15	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2049	chr2	191966451	191966452	rs7568275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q32.3		rs7568275-?	NR	2E-24				NR [~ 8900000] (imputed)	N
2049	chr2	191966451	191966452	rs7568275	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q32.3	STAT4	rs7568275-?	NR	1E-77		1.42	[1.36-1.48]	Illumina [at least 5000000] (imputed)	N
2049	chr2	191969878	191969879	rs10181656	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q32.3	STAT4	rs10181656-?	NR	2E-13				Illumina [129464] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q32.3		rs7582694-G	NR	1E-42		0.1381	[0.12-0.16] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (immunosuppressants)	3,954 European ancestry cases, 268,648 European ancestry controls, 3,483 East Asian ancestry cases, 175,243 East Asian ancestry controls	NA	2q32.3		rs7582694-G	NR	2E-13		0.1385	[0.1-0.18] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q32.3	STAT4	rs7582694-G	0.773	3E-9		0.916		Illumina [715631] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q32.3	STAT4	rs7582694-G	0.773	3E-9		0.916		Illumina [715631] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	2q32.3	STAT4	rs7582694-C	0.48	8E-16		1.5675	[NR]	Illumina [421909] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q32.3		rs7582694-?	NR	3E-39				NR [~ 8900000] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	2q32.3	STAT4	rs7582694-?	NR	4E-69		1.56	[1.48-1.64]	Illumina [at least 5000000] (imputed)	N
2049	chr2	191970119	191970120	rs7582694	26316170	Demirci FY	2015-08-28	Arthritis Rheumatol	Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.	Systemic lupus erythematosus	661 European ancestry cases, 487 European ancestry controls	4,467 European ancestry cases, 9,114 European ancestry controls	2q32.3	STAT4, STAT1	rs7582694-C	0.216	4E-7		1.811	[NR]	Affymetrix [up to 700598]	N
2049	chr2	191970329	191970330	rs13401064	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2q32.3	STAT4	rs13401064-?	NR	3E-8		0.1844	unit increase	Illumina [up to 143074]	N
2049	chr2	191973033	191973034	rs10174238	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q32.3		rs10174238-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2049	chr2	191973033	191973034	rs10174238	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	2q32.3	STAT4	rs10174238-?	NR	3E-42		1.369863	[1.25-1.49]	Illumina [6450125] (imputed)	N
2049	chr2	191973033	191973034	rs10174238	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-centromere-positive)	671 European ancestry cases, 3,466 European ancestry controls, 21 African American cases, 260 African American controls	NA	2q32.3	STAT4	rs10174238-?	NR	2E-9	(EA)			Illumina [126270]	N
2049	chr2	191973033	191973034	rs10174238	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	2q32.3	STAT4	rs10174238-?	NR	5E-13	(EA)			Illumina [126270]	N
2049	chr2	191973033	191973034	rs10174238	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	2q32.3	STAT4, STAT1	rs10174238-?	NR	8E-8	(EA)			Illumina [~ 2500000] (imputed)	N
2049	chr2	191973033	191973034	rs10174238	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	2q32.3	STAT4	rs10174238-?	NR	1E-11				Illumina [126270]	N
2049	chr2	191973033	191973034	rs10174238	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	2q32.3	STAT4	rs10174238-G	0.23	1E-13	(additive model)	1.29	[1.20-1.37]	Illumina [123003]	N
2049	chr2	191973562	191973563	rs6752770	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q32.3	STAT4	rs6752770-G	0.306009	2E-9		0.014346599	[0.0097-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2049	chr2	191973562	191973563	rs6752770	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2q32.3	STAT4	rs6752770-?	0.296	1E-6	(conditioned on rs6715106)	1.1		Illumina [139553]	N
2049	chr2	191974434	191974435	rs9967792	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2q32.3	STAT4	rs9967792-G	0.64	4E-12		1.09		Illumina [161311]	N
2049	chr2	191989355	191989356	rs6738544	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q32.3	STAT4	rs6738544-C	NR	2E-13		1.0741	NR	Affymetrix, Illumina [8278136] (imputed)	N
2049	chr2	192010487	192010488	rs7574070	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	2q32.3	STAT4	rs7574070-A	0.421	1E-9		1.27	[1.17-1.37]	Illumina [779465] (imputed)	N
2049	chr2	192016878	192016879	rs11684030	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	2q32.3		rs11684030-A	0.365517	1E-42		1.0619094	[1.05-1.07]	Affymetrix, Illumina [9851866] (imputed)	N
2049	chr2	192017770	192017771	rs897200	23001997	Hou S	2012-12-06	Arthritis Rheum	Identification of a susceptibility locus in STAT4 for Behcet's disease in Han Chinese in a genome-wide association study.	Behcet's disease	147 Han Chinese ancestry cases, 951 Han Chinese ancestry controls	554 Han Chinese ancestry cases, 1,159 Han Chinese ancestry controls		STAT4	rs897200-A	0.529	6E-9		1.45	[1.30-1.60]	Affymetrix [661736]	N
2050	chr2	192057405	192057406	rs7579443	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	2q32.3	STAT4, MYO1B	rs7579443-?	NR	3E-16		0.03607	[0.027-0.045] unit decrease novel	Illumina [6108953] (imputed)	N
2050	chr2	192060779	192060780	rs6709982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	2q32.3		rs6709982-C	0.629076	2E-17		0.0304935	[0.023-0.038] unit decrease	Illumina [13476165] (imputed)	N
2050	chr2	192096495	192096496	rs115860688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q32.3	NR	rs115860688-G	NR	2E-9		0.047	[0.032-0.062] unit increase	Affymetrix [9000000] (imputed)	N
2050	chr2	192096718	192096719	rs12614848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q32.3		rs12614848-?	NR	2E-15				NR [~ 8900000] (imputed)	N
2050	chr2	192096718	192096719	rs12614848	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q32.3	MYO1B	rs12614848-?	NR	1E-8		1.0498688	NR	Affymetrix [9154080] (imputed)	N
2050	chr2	192110218	192110219	rs13019004	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q32.3	MYO1B	rs13019004-T	0.32	1E-15		8.02	z-score increase	Affymetrix [4311822] (imputed)	N
2050	chr2	192111615	192111616	rs35596292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q32.3		rs35596292-T	NR	1E-74		0.0363	[0.032-0.04] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2050	chr2	192112049	192112050	rs35530564	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q32.3	MYO1B	rs35530564-T	0.67649	5E-87		0.0106301	[0.0096-0.0117] unit decrease	Affymetrix [13995440] (imputed)	N
2050	chr2	192117237	192117238	rs13030978	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	2q32.3	MYO1B, STAT4	rs13030978-T	0.32	1E-11		3.7	[2.80-4.6] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2050	chr2	192118046	192118047	rs1823913	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q32.3	MYO1B	rs1823913-A	0.38	9E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
2050	chr2	192121466	192121467	rs11681777	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q32.3	MYO1B	rs11681777-?		4E-17		0.0347	[0.027-0.043] unit increase	Illumina [31500000] (imputed)	N
2050	chr2	192126726	192126727	rs13013390	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q32.3		rs13013390-G	NR	1E-16		0.0177	[0.014-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2050	chr2	192126726	192126727	rs13013390	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q32.3	MYO1B	rs13013390-A	0.670529	5E-22		0.0023429	[0.0019-0.0028] unit decrease	Affymetrix [13995440] (imputed)	N
2051	chr2	192160969	192160970	rs139705512	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	2q32.3	MYO1B	rs139705512-A	0.02	5E-7		3.05	[1.97-4.70]	Affymetrix, Illumina [up to 7729175] (imputed)	N
2051	chr2	192163695	192163696	rs1947457	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.3	NR	rs1947457-?	NR	1E-37				Affymetrix [NR]	N
2052	chr2	192292707	192292708	rs145025296	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	2q32.3	MYO1B	rs145025296-C	0.02	2E-6		3.333333	[2.04-5.56]	Affymetrix, Illumina [up to 7729175] (imputed)	N
2052	chr2	192340846	192340847	rs9750499	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.3	OBFC2A	rs9750499-?	NR	7E-6	(TAG 50:5)	0.2725102	[0.15-0.39] unit increase	Affymetrix [at least 2500000] (imputed)	N
2052	chr2	192361439	192361440	rs1400884	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.3	OBFC2A	rs1400884-?	NR	3E-6	(PC 34:3)	0.21137981	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2052	chr2	192386862	192386863	rs10432510	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.3	NR	rs10432510-?	NR	3E-13				Affymetrix [NR]	N
2053	chr2	192418944	192418945	rs4595916	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q32.3	NR	rs4595916-?		8E-6				Illumina [4322238] (imputed)	N
2053	chr2	192438097	192438098	rs78009369	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs78009369-G	0.02962	1E-8	(SAA1)	0.1148	NR unit increase	Illumina [1671387] (imputed)	N
2053	chr2	192448841	192448842	rs62179734	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q32.3	NR	rs62179734-T	0.269	8E-9		0.0072031	[0.0048-0.0097] unit decrease	NR [9732723] (imputed)	N
2053	chr2	192462250	192462251	rs7560880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q32.3		rs7560880-C	NR	3E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2053	chr2	192462250	192462251	rs7560880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q32.3		rs7560880-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2053	chr2	192463315	192463316	rs56130222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q32.3	NR	rs56130222-T	0.784163	2E-15		0.021730086	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2053	chr2	192463315	192463316	rs56130222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q32.3	NR	rs56130222-T	0.784153	2E-12		0.019419076	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2053	chr2	192463315	192463316	rs56130222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q32.3		rs56130222-T	0.784173	7E-15		0.021265874	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2053	chr2	192463315	192463316	rs56130222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q32.3		rs56130222-T	0.784163	4E-13		0.019813297	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2053	chr2	192463315	192463316	rs56130222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs56130222-T	0.767757	6E-11				Affymetrix, Illumina [20825802] (imputed)	N
2053	chr2	192463565	192463566	rs13013705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q32.3		rs13013705-A	0.078047	2E-10		0.026722996	[0.019-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2053	chr2	192465597	192465598	rs6706693	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	2q32.3	OBFC2A	rs6706693-A	0.219	9E-6	(Recessive model)	1.743	[1.362-2.232]	Illumina [733202]	N
2053	chr2	192472382	192472383	rs11674300	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.3	MYO1B	rs11674300-?	NR	7E-6	(adenosine monophosphate)	0.1944949	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2053	chr2	192514855	192514856	rs13392977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q32.3	NR	rs13392977-A	0.053967	4E-11		0.028237	[0.02-0.037] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2053	chr2	192515991	192515992	rs10931512	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q32.3	SDPR	rs10931512-?	NR	9E-6	(SM 16:0)	0.30720425	[0.17-0.44] unit increase	Affymetrix [at least 2500000] (imputed)	N
2053	chr2	192521278	192521279	rs13013264	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q32.3		rs13013264-T	0.07163	2E-9		0.025834747	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2053	chr2	192521278	192521279	rs13013264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs13013264-T	0.0757778	9E-12				Affymetrix, Illumina [24649327] (imputed)	N
2053	chr2	192521278	192521279	rs13013264	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q32.3	NR	rs13013264-T	0.070553	4E-14		0.02714	[0.02-0.034] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2053	chr2	192522422	192522423	rs12997100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q32.3		rs12997100-C	NR	7E-10		0.0233	[0.016-0.031] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2053	chr2	192522422	192522423	rs12997100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q32.3	NR	rs12997100-C	0.071478	5E-11		0.028172271	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
2053	chr2	192522422	192522423	rs12997100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q32.3		rs12997100-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2053	chr2	192526927	192526928	rs34656000	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q32.3		rs34656000-A	NR	7E-10		0.0253	[0.017-0.033] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2054	chr2	192587203	192587204	rs11903757	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	2q32.3	NABP1	rs11903757-C	0.16	4E-8		1.16	[1.10-1.22]	Affymetrix, Illumina [2708280] (imputed)	N
2054	chr2	192671980	192671981	rs12470967	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	2q32.3	NR	rs12470967-A	0.43	2E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2054	chr2	192671980	192671981	rs12470967	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	2q32.3	NR	rs12470967-A	0.43	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q32.3		rs7585866-G	NR	8E-17		0.0201	[0.015-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q32.3		rs7585866-A	0.648	2E-11				Affymetrix [10369434] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q32.3	SDPR	rs7585866-G	0.352667	2E-15		0.018677173	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q32.3	SDPR	rs7585866-G	0.35268	8E-50		0.034870934	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs7585866-G	0.338578	1E-18				Affymetrix, Illumina [24588908] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q32.3	NR	rs7585866-G	0.35083	8E-21		0.018137	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs7585866-A	0.659746	3E-82				Affymetrix, Illumina [17210439] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q32.3	NR	rs7585866-A	0.64828	2E-84		0.039269	[0.035-0.043] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q32.3	SDPR	rs7585866-G	0.3532	1E-9		0.02336802	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2055	chr2	192696254	192696255	rs7585866	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q32.3	SDPR	rs7585866-G	0.3534	3E-32		0.04484708	[0.037-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2055	chr2	192700399	192700400	rs1128965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q32.3	SDPR	rs1128965-C	0.488255	2E-20		0.021029253	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2055	chr2	192701067	192701067	rs756051737	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	2q32.3		rs756051737-?	NR	9E-9		0.833134	[0.55-1.12] unit decrease	NR [9800000] (imputed)	N
2055	chr2	192701264	192701265	rs116274727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q32.3	SDPR	rs116274727-C	0.00692199999999998	4E-20		0.12416793	[0.098-0.151] unit increase	Affymetrix [93095623] (imputed)	N
2055	chr2	192721019	192721020	rs73065351	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs73065351-G	0.01394	3E-8	(TXNL1)	0.05426	NR unit increase	Illumina [1671387] (imputed)	N
2055	chr2	192723127	192723128	rs58577564	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q32.3	SDPR	rs58577564-A	0.1	8E-13		0.78	[0.56-1] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2055	chr2	192723127	192723128	rs58577564	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q32.3	SDPR	rs58577564-A	0.0953	3E-10		0.7321	[0.5-0.96] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2055	chr2	192740082	192740083	rs116418249	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q32.3	CAVIN2	rs116418249-C	0.01	5E-6	(African American)	0.85	0.48-1.21 unit decrease	Illumina [NR] (imputed)	N
2055	chr2	192761608	192761610	rs1436548982	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs1436548982-A	0.01045	1E-10	(ABAT)	3.035	NR unit increase	Illumina [1671387] (imputed)	N
2056	chr2	192819029	192819030	rs6756470	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q32.3	TMEFF2	rs6756470-T	0.287	2E-9		0.012818652	[0.0086-0.017] unit decrease	Illumina [9339358] (imputed)	N
2056	chr2	192914285	192914286	rs10497720	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q32.3	NR	rs10497720-T	0.374	3E-7		0.00576181	[0.0036-0.008] unit decrease	NR [9732723] (imputed)	N
2056	chr2	192914361	192914362	rs10497721	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Diabetes (incident)	91 cases, 1,083 controls	NA	2q32.3	TMEFF2	rs10497721-?	NR	7E-7				Affymetrix [70897]	N
2057	chr2	192949002	192949003	rs13001304	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q32.3	NR	rs13001304-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2057	chr2	192949002	192949003	rs13001304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q32.3		rs13001304-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2057	chr2	192955504	192955505	rs13007495	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	2q32.3	TMEFF2	rs13007495-?	0.14	4E-6	(Recessive)	1.47	[1.25-1.73]	Affymetrix [319222]	N
2057	chr2	192959869	192959870	rs142897541	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	2q32.3	TMEFF2	rs142897541-T	0.034	5E-8	(First-generation cephalosporins [J01DB])	3.65		Illumina [16500000] (imputed)	N
2057	chr2	192996514	192996515	rs111552533	29395996	van Laarhoven A	2018-01-23	Lancet Infect Dis	Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.	CSF tryptophan concentration in tuberculous meningitis	130 individuals	NA	2q32.3	TMEFF2	rs111552533-?		3E-6		1.26	unit increase	Illumina [4751257] (imputed)	N
2057	chr2	193052352	193052353	rs1113932	25042611	Griffin PJ	2014-07-19	Am J Hematol	The genetics of hemoglobin A2 regulation in sickle cell anemia.	Hemoglobin A2 levels in sickle cell anemia	618 African American cases	173 African American cases, 398 Chinese ancestry individuals	2q32.3	NR	rs1113932-G	0.06	9E-6	(AA)	0.2881	[NR] unit increase	Illumina [NR]	N
2058	chr2	193122539	193122540	rs2581257	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip and palate	59 Asian ancestry cases, 94 European ancestry cases, 263 Hispanic cases, 1,626 controls	NA	2q32.3	NR	rs2581257-?		7E-6		1.56	[1.28-1.90]	Illumina [539473] (imputed)	N
2059	chr2	193220411	193220412	rs800823	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q32.3	Intergenic	rs800823-C	0.976	4E-6	(AA)	0.113	NR unit increase	Illumina [NR] (imputed)	N
2060	chr2	193333902	193333903	rs1385351	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q32.3	intergenic	rs1385351-?	NR	4E-6	(progression)			Illumina [NR]	N
2061	chr2	193505359	193505360	rs2102719	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q32.3	NR	rs2102719-?	NR	3E-6		4.703	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2061	chr2	193559842	193559843	rs77499859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q32.3		rs77499859-C	NR	1E-8		0.0296	[0.019-0.04] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2062	chr2	193596570	193596571	rs1439656	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q32.3	NR	rs1439656-C	0.493042	1E-13		0.052364994	[0.038-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2062	chr2	193682339	193682340	rs72909717	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q32.3	NR	rs72909717-?	NR	3E-6		4.656	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2062	chr2	193706510	193706511	rs56408528	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.3		rs56408528-T	0.5121	7E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2063	chr2	193726046	193726047	rs13424309	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs13424309-T	NR	6E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
2063	chr2	193738335	193738336	rs2011302	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	2q32.3	PCGEM1	rs2011302-T	0.623	4E-8		0.94847	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
2063	chr2	193742172	193742173	rs10174573	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	2q32.3	intergenic	rs10174573-T	0.57	2E-6	(partial response - 2 weeks)	1.564	[1.39-1.74]	Affymetrix, Illumina [1200000] (imputed)	N
2063	chr2	193801009	193801010	rs7570446	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q32.3	TMEFF2	rs7570446-C	0.455515	1E-8		0.00780228	[0.0051-0.0105] unit decrease	Affymetrix [12370749]	N
2063	chr2	193801009	193801010	rs7570446	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q32.3	NA	rs7570446-A	0.5397	5E-9		0.0111	[0.0074-0.0148] unit increase	NR [~ 27400000] (imputed)	N
2063	chr2	193801887	193801888	rs1112629	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q32.3	PCGEM1	rs1112629-C	0.4909	4E-12		0.014012171	[0.01-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2063	chr2	193802477	193802478	rs1596747	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	2q32.3	NR	rs1596747-A	0.51	1E-10		0.031	unit decrease	NR [2324712] (imputed)	N
2063	chr2	193802477	193802478	rs1596747	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q32.3	NR	rs1596747-A	0.5077	1E-9		0.013529275	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2063	chr2	193811640	193811641	rs12478299	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q32.3	NR	rs12478299-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2063	chr2	193811640	193811641	rs12478299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q32.3		rs12478299-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2063	chr2	193812098	193812098	rs10641836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q32.3		rs10641836-AGAT	NR	4E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2063	chr2	193840739	193840740	rs12693677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.3		rs12693677-A	0.5218	3E-12	(conditional-joint)	0.0102	[0.0073-0.0131] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2063	chr2	193846273	193846274	rs17656017	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q32.3	PCGEM1	rs17656017-?	NR	1E-13		0.015048835	[0.011-0.019] unit decrease	NR [7306098]	N
2063	chr2	193848339	193848340	rs59979824	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q32.3	NR	rs59979824-C	0.335984	3E-15		0.059152	[0.044-0.074] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2063	chr2	193848339	193848340	rs59979824	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q32.3	NR	rs59979824-?		1E-9				NR [8377093]	N
2063	chr2	193848339	193848340	rs59979824	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q32.3	NR	rs59979824-?		2E-9				NR [520857]	N
2063	chr2	193848339	193848340	rs59979824	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q32.3	Intergenic	rs59979824-?		4E-9				NR [6786993] (imputed)	N
2063	chr2	193848339	193848340	rs59979824	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q32.3	NR	rs59979824-?	NR	3E-10				Illumina [up to 5582932] (imputed)	N
2063	chr2	193848339	193848340	rs59979824	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.3	PCGEM1	rs59979824-C	NR	3E-9	(EA)	1.074	[1.05-1.1]	Illumina [6627481] (imputed)	N
2063	chr2	193848339	193848340	rs59979824	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q32.3	intergenic	rs59979824-?		6E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
2063	chr2	193848339	193848340	rs59979824	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs59979824-C	NR	2E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2063	chr2	193848339	193848340	rs59979824	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q32.3	PCGEM1	rs59979824-C	0.663	8E-9		1.0672358	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
2063	chr2	193853268	193853269	rs11675476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.3		rs11675476-T	0.5224	1E-19		0.0127	[0.01-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2064	chr2	193864485	193864485	rs11455989	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q32.3	NR	rs11455989-?		6E-17		0.018387	[0.014-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
2064	chr2	193927135	193927136	rs13019859	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q32.3	NR	rs13019859-?	NR	7E-9		1.05348	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
2064	chr2	193954550	193954551	rs10170968	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.3	NR	rs10170968-?	NR	1E-7				Affymetrix [NR]	N
2064	chr2	193981624	193981625	rs13033576	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q32.3	Intergenic	rs13033576-A	0.5294	6E-18	(MTAG)	0.0114	[0.0089-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2064	chr2	193983673	193983674	rs1457532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q32.3	Intergenic	rs1457532-A	0.4801	9E-12	(MTAG)	0.0113	[0.008-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2064	chr2	193984620	193984621	rs17662626	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q32.3	PCGEM1	rs17662626-?	0.915	5E-8	(Modelling analysis)			NR [1252901] (imputed)	N
2064	chr2	193984620	193984621	rs17662626	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	2q32.3	PCGEM1	rs17662626-A	0.91	5E-8		1.2	[1.13-1.26]	Affymetrix, Illumina [1252901] (imputed)	N
2065	chr2	194001112	194001113	rs72915655	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	2q32.3	NR	rs72915655-T	0.83	1E-8		1.04		NR [8546065] (imputed)	N
2065	chr2	194002781	194002782	rs12619354	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.3	LOC10042066	rs12619354-T	NR	3E-8		1.058	[1.04-1.08]	Illumina [6627481] (imputed)	N
2065	chr2	194002781	194002782	rs12619354	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.3	LOC10042066	rs12619354-T	NR	3E-7	(EA)	1.0609	[1.04-1.08]	Illumina [6627481] (imputed)	N
2065	chr2	194002781	194002782	rs12619354	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q32.3	PCGEM1	rs12619354-T	NR	4E-8		1.056	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2065	chr2	194005006	194005007	rs2085496	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q32.3	NR	rs2085496-A	0.528	6E-6		0.015504587	[0.0088-0.0222] unit increase	Affymetrix [up to 6544775] (imputed)	N
2065	chr2	194007718	194007719	rs12620477	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q32.3		rs12620477-?	NR	3E-8				NR [NR]	N
2065	chr2	194007718	194007719	rs12620477	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q32.3		rs12620477-?	NR	5E-8				NR [NR]	N
2066	chr2	194168719	194168720	rs13383265	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q32.3	NR	rs13383265-?	NR	8E-12				Affymetrix [NR]	N
2067	chr2	194276933	194276934	rs1837491	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q32.3	NR	rs1837491-?		8E-6				Illumina [4322238] (imputed)	N
2067	chr2	194295531	194295532	rs77941806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs77941806-T	0.0122	2E-10	(ACOT2)	0.04186	NR unit increase	Illumina [1671387] (imputed)	N
2067	chr2	194296293	194296294	rs2245901	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q32.3	NR	rs2245901-G	0.414513	1E-12		0.05079997	[0.037-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2067	chr2	194296293	194296294	rs2245901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q32.3		rs2245901-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2067	chr2	194296293	194296294	rs2245901	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q32.3		rs2245901-A	0.3983	4E-10	(conditional-joint)	0.0093	[0.0064-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2067	chr2	194346283	194346284	rs10204454	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.3	LOC645314	rs10204454-T	NR	3E-8		1.057	[1.04-1.08]	Illumina [6627481] (imputed)	N
2067	chr2	194367539	194367540	rs6716963	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q32.3	LOC645314	rs6716963-A	NR	3E-8	(EA)	1.0649627	[1.04-1.09]	Illumina [6627481] (imputed)	N
2067	chr2	194367539	194367540	rs6716963	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs6716963-A	NR	6E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
2067	chr2	194378648	194378649	rs2439202	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	2q32.3	TMEFF2	rs2439202-C	NR	3E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
2067	chr2	194378648	194378649	rs2439202	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q32.3	NR	rs2439202-?		6E-11				NR [520857]	N
2067	chr2	194378648	194378649	rs2439202	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	2q32.3	NR	rs2439202-?		8E-9				NR [8956949]	N
2067	chr2	194378902	194378903	rs35610290	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q32.3	Intergenic	rs35610290-?		2E-10				NR [6786993] (imputed)	N
2068	chr2	194384138	194384139	rs2581109	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2581109-?	NR	1E-8				NR [2625067]	N
2068	chr2	194437888	194437889	rs2719164	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	2q32.3	intergenic	rs2719164-A	0.564	5E-8		1.05306	[1.03-1.07]	Affymetrix, Illumina [7549318] (imputed)	N
2068	chr2	194444217	194444218	rs2719169	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q32.3	NR	rs2719169-A	0.4095	1E-8		0.06331754	[0.041-0.085] unit decrease	NR [NR]	N
2068	chr2	194464706	194464707	rs13003404	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs13003404-?	NR	2E-9				NR [2625067]	N
2068	chr2	194468523	194468524	rs6748251	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q32.3	NR	rs6748251-?		2E-9				NR [8377093]	N
2069	chr2	194578774	194578775	rs72911847	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	2q32.3	intergenic	rs72911847-?		5E-7		0.4722	[NR] unit decrease	Illumina [7174392] (imputed)	N
2069	chr2	194620193	194620194	rs78901727	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs78901727-A	NR	9E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
2070	chr2	194692310	194692311	rs191228972	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q32.3	NR	rs191228972-?	NR	1E-6		0.6347	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2071	chr2	194872182	194872183	rs2176528	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	2q32.3	intergenic	rs2176528-C	NR	4E-6		1.12	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
2072	chr2	194911566	194911567	rs111822076	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	2q32.3		rs111822076-T	NR	2E-6		1.209775	[1.13-1.29]	Illumina [11600722] (imputed)	N
2073	chr2	195042559	195042560	rs113942968	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	2q32.3		rs113942968-G	NR	2E-6		1.1980352	[1.12-1.27]	Illumina [11600722] (imputed)	N
2073	chr2	195079898	195079899	rs72925918	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs72925918-G	NR	7E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
2073	chr2	195151204	195151205	rs150734725	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q32.3	NR	rs150734725-?	NR	6E-6	(EA)	1.4012	[0.8-2] unit decrease	Illumina [up to 11892802] (imputed)	N
2073	chr2	195151204	195151205	rs150734725	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q32.3	NR	rs150734725-?	NR	3E-7	(EA)	1.3024	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2074	chr2	195199594	195199595	rs62196198	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	2q32.3	NR	rs62196198-?		3E-8	(PCB126)	1.23	[0.8-1.66] unit decrease	Illumina [8736858] (imputed)	N
2074	chr2	195261404	195261405	rs35774328	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	2q32.3		rs35774328-A	0.0531	1E-5		0.273	[0.1537-0.4848]	Illumina [7778465] (imputed)	N
2075	chr2	195303498	195303499	rs138943155	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs138943155-C	0.0122	2E-8	(MYO1B)	0.1476	NR unit increase	Illumina [1671387] (imputed)	N
2075	chr2	195336104	195336105	rs188679781	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q32.3	NR	rs188679781-A	0.0122	2E-8	(MYO1B)	0.1476	NR unit increase	Illumina [1671387] (imputed)	N
2076	chr2	195547392	195547393	rs801350	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2q32.3	intergenic	rs801350-?		2E-8	(Hispanic)		[NR]	Illumina [936149]	N
2077	chr2	195559996	195559997	rs801378	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	2q32.3	intergenic	rs801378-?		2E-8	(Hispanic)		[NR]	Illumina [936149]	N
2079	chr2	195851664	195851665	rs71420669	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	2q32.3	intergenic	rs71420669-?	NR	9E-7				Affymetrix, Illumina [NR] (imputed)	N
2079	chr2	195871818	195871819	rs10172965	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q32.3	NR	rs10172965-T	0.173	3E-6		0.021157008	[0.012-0.03] unit decrease	Affymetrix [up to 6544775] (imputed)	N
2079	chr2	195871818	195871819	rs10172965	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	2q32.3	SLC39A10	rs10172965-T	0.139	6E-6	(Harm avoidance)	0.3	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
2079	chr2	195881282	195881283	rs16832161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q32.3	NR	rs16832161-?	NR	1E-6		4.893	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2079	chr2	195940129	195940130	rs139095264	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	2q32.3	NR	rs139095264-A	NR	8E-6		1.8269		Affymetrix [8183964] (imputed)	N
2080	chr2	195954733	195954734	rs777717	25710614	Hong X	2015-02-24	Nat Commun	Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.	Food allergy	671 European ancestry child cases, 144 European ancestry non-allergic non-sensitized child controls, 234 European ancestry uncertain phenotype child controls, 1,148 European ancestry uncertain phenotype adult controls	NA	2q32.3	LOC645314, SLC39A10	rs777717-?	NR	5E-6				Illumina [6459842] (imputed)	N
2080	chr2	195964435	195964436	rs2569913	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	2q32.3	NR	rs2569913-C	NR	1E-6				Affymetrix [at least 811691] (imputed)	N
2080	chr2	195989552	195989553	rs79386120	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		2q32.3	DMBT1	rs79386120-T	0.077	8E-6		0.686	[0.39-0.98] unit increase	Illumina [640625] (imputed)	N
2080	chr2	196008308	196008309	rs117506642	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced acute severe leukopenia in inflammatory bowel disease (conditioned on rs116855232)	43 Japanese ancestry cases, 1,172 Japanese ancestry controls	NA	2q32.3	intergenic	rs117506642-?	NR	5E-7		13.3	[4.9-36.3]	Affymetrix [> 5000000] (imputed)	N
2082	chr2	196256957	196256958	rs1524040	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	2q32.3	intergenic	rs1524040-A	0.23	1E-6		1.21	[0.72-1.7] unit increase	Illumina [6380737] (imputed)	N
2082	chr2	196272120	196272121	rs16840288	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	2q32.3	NR	rs16840288-A	NR	7E-6		0.06134	[0.035-0.088] unit decrease	Illumina [541493]	N
2082	chr2	196282057	196282058	rs2037601	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	2q32.3	NR	rs2037601-?	NR	2E-6	(AA)	1.44	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2083	chr2	196365889	196365890	rs4591358	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimicrotubule drugs)	371 Japanese ancestry cases, 825 Japanese ancestry controls	NA	2q32.3	LOC391470	rs4591358-C	0.215	7E-6	(Allelic model)	1.578	[1.297-1.92]	Illumina [733202]	N
2083	chr2	196370703	196370704	rs60553955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q32.3		rs60553955-G	NR	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2083	chr2	196389734	196389735	rs11535058	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (mothers vs fathers)	705 mothers, 645 fathers	NA	2q32.3	NR	rs11535058-?		2E-6		1.95	[NR]	Illumina [NR] (imputed)	N
2083	chr2	196410081	196410082	rs68016841	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	2q32.3	NR	rs68016841-T		9E-6		0.2425	[0.14-0.35] SD units decrease	NR [10700000] (imputed)	N
2083	chr2	196439004	196439005	rs113892140	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	2q32.3		rs113892140-A	0.042394	2E-7		1.644196	NR	Affymetrix [7846216] (imputed)	N
2084	chr2	196479497	196479501	rs10604007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q32.3		rs10604007-T	NR	7E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2084	chr2	196479497	196479501	rs10604007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q32.3		rs10604007-T	NR	2E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2084	chr2	196542473	196542474	rs568232057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q32.3		rs568232057-A	NR	5E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
2085	chr2	196663614	196663615	rs4358140	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q32.3		rs4358140-G	NR	2E-9		0.0385	[0.026-0.051] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
2085	chr2	196679976	196679977	rs6744374	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q32.3		rs6744374-C	0.41	4E-12		6.92	z score increase	Affymetrix [9061022] (imputed)	N
2085	chr2	196728350	196728351	rs341937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.3		rs341937-?	NR	4E-11				NR [~ 8900000] (imputed)	N
2086	chr2	196853829	196853830	rs13403027	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Diastolic blood pressure	815 African ancestry early adolescents	NA	2q32.3	DNAH7	rs13403027-A	0.71	9E-7		1.91	[-5.6752-9.4952] unit decrease	Illumina [20074711] (imputed)	N
2087	chr2	196948591	196948592	rs2090670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q32.3		rs2090670-A	NR	7E-9		0.0494	[0.033-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2087	chr2	196952009	196952010	rs6712905	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q32.3	NR	rs6712905-C	0.3181	2E-11		0.0279	[0.02-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2087	chr2	196959621	196959622	rs139146062	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	2q32.3	NR	rs139146062-T	0.0241839	7E-7		1.147	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
2087	chr2	196959621	196959622	rs139146062	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	2q32.3	NR	rs139146062-T	0.0241839	9E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
2087	chr2	196974332	196974333	rs77356147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q32.3		rs77356147-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2087	chr2	196991992	196991994	rs772782128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q32.3		rs772782128-C	NR	2E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2087	chr2	196997243	196997244	rs76005009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs76005009-G	0.103208	6E-15				Affymetrix, Illumina [24246363] (imputed)	N
2087	chr2	196998314	196998315	rs6741307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q32.3	STK17B	rs6741307-T	0.640173	9E-11		0.014908925	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2087	chr2	196998314	196998315	rs6741307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q32.3	NR	rs6741307-T	0.639529	6E-11		0.014022	[0.0098-0.0182] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2088	chr2	197004438	197004439	rs1054537	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q32.3		rs1054537-A	0.35	9E-33		11.93	z score increase	Affymetrix [9061022] (imputed)	N
2088	chr2	197006643	197006644	rs539299744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q32.3	STK17B	rs539299744-T	0.134865	3E-14		0.024859792	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2088	chr2	197006643	197006644	rs539299744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q32.3	STK17B	rs539299744-T	0.134817	1E-9		0.019979551	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2088	chr2	197006643	197006644	rs539299744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q32.3	STK17B	rs539299744-T	0.13498	3E-12		0.022561854	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2088	chr2	197013199	197013200	rs7606878	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q32.3	NR	rs7606878-C	0.3492	4E-12				NR [9056863] (imputed)	N
2088	chr2	197024922	197024922	rs200401106	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q32.3		rs200401106-A	0.871	4E-14		0.12	[0.09-0.16] % increase	Affymetrix [NR] (imputed)	N
2088	chr2	197027791	197027792	rs1519602	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q32.3		rs1519602-T	0.35	1E-15		8.0	z score increase	Affymetrix [9061022] (imputed)	N
2088	chr2	197027791	197027792	rs1519602	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q32.3	NR	rs1519602-T	0.3488	4E-15				NR [9056863] (imputed)	N
2088	chr2	197028905	197028907	rs144221614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q32.3		rs144221614-T	NR	3E-11		0.0234	[0.017-0.03] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2088	chr2	197028905	197028907	rs144221614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q32.3		rs144221614-T	NR	2E-8		0.0198	[0.013-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2088	chr2	197033384	197033385	rs143130444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q32.3	NR	rs143130444-D	0.129071	5E-10		0.018915	[0.013-0.025] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2088	chr2	197048328	197048329	rs17302154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q32.3		rs17302154-C	0.128971	3E-13		0.0254212	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2088	chr2	197048328	197048329	rs17302154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q32.3		rs17302154-C	0.128954	1E-9		0.019970542	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2088	chr2	197048328	197048329	rs17302154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q32.3		rs17302154-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2088	chr2	197048328	197048329	rs17302154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q32.3		rs17302154-?	NR	3E-13				NR [~ 8900000] (imputed)	N
2088	chr2	197053230	197053231	rs2168368	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q32.3	NR	rs2168368-C	0.603	1E-10		0.0071375	[0.005-0.0093] unit decrease	NR [9732723] (imputed)	N
2088	chr2	197060125	197060126	rs55889195	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q32.3	NR	rs55889195-C	0.102644	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
2088	chr2	197070712	197070713	rs2375683	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q32.3	HECW2	rs2375683-G	0.75013	5E-12		0.0146127	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
2088	chr2	197070712	197070713	rs2375683	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q32.3		rs2375683-?	NR	2E-15		0.0177979	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
2088	chr2	197074775	197074776	rs11693007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.3		rs11693007-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2090	chr2	197293971	197293971	rs201408125	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	2q32.3	NR	rs201408125-?	NR	9E-6		0.3156	[0.17-0.46] unit decrease	Illumina [at least 560000] (imputed)	N
2090	chr2	197301424	197301425	rs4850712	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q32.3		rs4850712-T	0.3221	9E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2090	chr2	197311214	197311215	rs147861361	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q32.3	HECW2	rs147861361-T	0.9941	8E-6		0.2795	[0.16-0.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2090	chr2	197327734	197327735	rs9677260	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q32.3	NR	rs9677260-T	NR	9E-7		1.07	[NR]	Illumina [7158791] (imputed)	N
2091	chr2	197398199	197398200	rs78509568	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (90 days post influenza vaccination)	298 individuals	NA	2q32.3	NR	rs78509568-?	NR	2E-8			[NR]	NR [1665663]	N
2091	chr2	197404713	197404714	rs4341955	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q32.3	HECW2	rs4341955-G	0.206767	1E-14		0.0174532	[0.013-0.022] unit decrease	NR [13737936] (imputed)	N
2091	chr2	197404713	197404714	rs4341955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q32.3		rs4341955-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2091	chr2	197424937	197424938	rs140970962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q32.3	NR	rs140970962-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2091	chr2	197504825	197504826	rs6434873	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	2q33.1	PGAP1	rs6434873-?		4E-6		3.955	[2.35-5.56] unit increase	Illumina [~ 4900000] (imputed)	N
2093	chr2	197673655	197673656	rs148967259	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q33.1	C2orf66	rs148967259-G	0.0159319966360889	4E-6	(G_unclassified_P_Firmicutes_HB)	1.10907	[0.64-1.58] unit decrease	Illumina [7711310] (imputed)	N
2093	chr2	197779589	197779590	rs36088520	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q33.1	NR	rs36088520-T	0.104155	6E-9		0.0283274	[0.019-0.037] unit increase	Affymetrix [16580851] (imputed)	N
2095	chr2	197920168	197920169	rs4850410	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	2q33.1	ANKRD44, PGAP1, LOC729342	rs4850410-?	NR	1E-6		1.56	[1.19-2.08]	Illumina [291943]	N
2095	chr2	198019104	198019105	rs2712876	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	2q33.1	NR	rs2712876-T		7E-7		0.6269	[0.38-0.87] SD units increase	NR [10700000] (imputed)	N
2096	chr2	198095766	198095767	rs4435471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q33.1		rs4435471-A	0.194988	1E-8		0.0144808	[0.0095-0.0194] unit decrease	Illumina [13479295] (imputed)	N
2096	chr2	198129369	198129370	rs7580108	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.1	NR	rs7580108-?	NR	7E-23				Affymetrix [NR]	N
2096	chr2	198138469	198138470	rs116220125	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	2q33.1	NR	rs116220125-C		4E-6		1.5794	[0.91-2.25] SD units increase	NR [10700000] (imputed)	N
2096	chr2	198144001	198144002	rs1429411	25338677	Kariuki SN	2014-10-23	Genes Immun	Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.	Interferon alpha levels in systemic lupus erythematosus	88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases	715 European ancestry cases, 450 African American cases	2q33.1	ANKRD44, LOC729342	rs1429411-C	NR	5E-6	(EA)	1.55	[1.20-2.00]	Illumina [291943]	N
2096	chr2	198146380	198146381	rs2043016	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q33.1		rs2043016-T	0.38	2E-12				NR [NR] (imputed)	N
2096	chr2	198146380	198146381	rs2043016	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q33.1		rs2043016-T	0.38	2E-11		0.01	% increase	NR [NR] (imputed)	N
2096	chr2	198164529	198164530	rs1896857	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	2q33.1	NR	rs1896857-A	0.74	8E-6		1.3	[1.18-1.42]	Illumina [4058415] (imputed)	N
2096	chr2	198166564	198166565	rs919433	27418160	van 't Hof FN	2016-07-14	J Am Heart Assoc	Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms.	Intracranial, abdominal aortic or thoracic aortic aneurysm (pleiotropy)	1,516 European ancestry intracranial aneurysm cases, 818 European ancestry abdominal aortic aneurysm cases, 760 European ancestry thoracic aortic aneurysm cases, 9,507 European ancestry controls	NA	2q33.1	ANKRD44	rs919433-A	0.416	5E-8		1.18	[1.12-1.24]	Illumina [9245988] (imputed)	N
2097	chr2	198182939	198182940	rs4850788	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	2q33.1		rs4850788-?	NR	5E-9		0.0193	NR unit increase	NR [4425810] (imputed)	N
2097	chr2	198183879	198183880	rs59580628	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.1	NR	rs59580628-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
2097	chr2	198200122	198200123	rs787989	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q33.1	NR	rs787989-A	0.571403	3E-8		0.0392891	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
2097	chr2	198200801	198200802	rs787988	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q33.1	NR	rs787988-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
2097	chr2	198200801	198200802	rs787988	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	ANKRD44, SF3B1	rs787988-C	0.4423	8E-21		1.0357327		Affymetrix [11880941] (imputed)	N
2097	chr2	198207606	198207607	rs6711624	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q33.1		rs6711624-G	NR	2E-12		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2097	chr2	198207923	198207925	rs71012974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q33.1		rs71012974-C	0.419523	3E-10		0.014375225	[0.0099-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
2097	chr2	198207923	198207925	rs71012974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q33.1		rs71012974-C	0.419557	3E-9		0.013459491	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
2097	chr2	198214395	198214396	rs55702914	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q33.1	intergenic	rs55702914-G	0.354	1E-6		0.371	[0.22-0.52] unit decrease	Illumina [at least 5086170] (imputed)	N
2097	chr2	198232000	198232000	rs59314546	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	2q33.1		rs59314546-?	NR	2E-10				NR [9705931] (imputed)	N
2097	chr2	198238222	198238223	rs55725278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs55725278-T	0.667616	1E-13				Affymetrix, Illumina [24588908] (imputed)	N
2097	chr2	198257794	198257795	rs4685	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q33.1		rs4685-T	0.27	5E-62		16.62	z score increase	Affymetrix [9061022] (imputed)	N
2097	chr2	198257794	198257795	rs4685	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q33.1		rs4685-T	0.27	2E-21		9.48	z score increase	Affymetrix [9061022] (imputed)	N
2097	chr2	198257794	198257795	rs4685	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.1		rs4685-T	0.27	2E-26		10.65	z score increase	Affymetrix [9061022] (imputed)	N
2097	chr2	198257794	198257795	rs4685	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q33.1	NR	rs4685-T	0.3277	1E-17				NR [9056863] (imputed)	N
2097	chr2	198257794	198257795	rs4685	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	2q33.1		rs4685-?	NR	2E-11				NR [2625067]	N
2097	chr2	198257794	198257795	rs4685	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	2q33.1		rs4685-?	NR	7E-9				NR [2625067]	N
2097	chr2	198257794	198257795	rs4685	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2q33.1	NR	rs4685-T	0.2744	8E-12		0.07909276	[0.056-0.102] unit increase	NR [NR]	N
2097	chr2	198263145	198263146	rs16865262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs16865262-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2097	chr2	198273590	198273591	rs12151726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q33.1	SF3B1	rs12151726-T	NR	2E-8		0.0172587	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
2097	chr2	198281775	198281776	rs699319	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	2q33.1	SF3B1	rs699319-C	0.318762	2E-6		0.0318	[0.02-0.044] unit increase	Illumina [1220000] (imputed)	N
2097	chr2	198293690	198293691	rs788021	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q33.1	SF3B1	rs788021-?	NR	1E-9		0.013781111	[0.0093-0.0182] unit decrease	NR [7306098]	N
2097	chr2	198304576	198304577	rs6434928	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q33.1	NR	rs6434928-A	0.7256	2E-9		0.06987272	[0.047-0.093] unit decrease	NR [NR]	N
2097	chr2	198304576	198304577	rs6434928	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q33.1	NR	rs6434928-?		8E-12				NR [8377093]	N
2097	chr2	198304576	198304577	rs6434928	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q33.1	NR	rs6434928-?		2E-9				NR [8377093]	N
2097	chr2	198304576	198304577	rs6434928	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q33.1	NR	rs6434928-?		8E-10				NR [520857]	N
2097	chr2	198304576	198304577	rs6434928	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SF3B1	rs6434928-G	NR	2E-10		1.0672358	[1.05-1.09]	Illumina [6627481] (imputed)	N
2097	chr2	198304576	198304577	rs6434928	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SF3B1	rs6434928-G	NR	1E-11	(EA)	1.0818998	[1.06-1.1]	Illumina [6627481] (imputed)	N
2097	chr2	198304576	198304577	rs6434928	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q33.1	ANKRD44, ANKRD44-IT1, BOLL, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MARS2, MOB4, PLCL1, RFTN2, SF3B1	rs6434928-?	NR	4E-13		1.076	[1.06-1.1]	Illumina [8000000] (imputed)	N
2097	chr2	198304576	198304577	rs6434928	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q33.1	ANKRD44, ANKRD44-IT1, BOLL, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MARS2, MOB4, PLCL1, RFTN2, SF3B1, SNORA105A, SNORA105B	rs6434928-?		3E-11		1.0752687	[1.05-1.09]	Affymetrix, Illumina [NR]	N
2097	chr2	198304576	198304577	rs6434928	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs6434928-G	NR	5E-11		1.0752687	[NR]	Illumina [7158791] (imputed)	N
2097	chr2	198304576	198304577	rs6434928	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q33.1	ANKRD44, BOLL, COQ10B, HSPD1, HSPE1, MARS2, PLCL1, RFTN2, SF3B1	rs6434928-G	0.357	2E-11		1.0764263	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
2098	chr2	198317782	198317783	rs3731570	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	SF3B1, COQ10B	rs3731570-T	0.4737	3E-23		1.0373		Affymetrix [11880941] (imputed)	N
2098	chr2	198317782	198317783	rs3731570	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q33.1	NR	rs3731570-?	NR	4E-10				Illumina [7427422] (imputed)	N
2098	chr2	198337519	198337520	rs2565164	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q33.1	NR	rs2565164-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
2098	chr2	198338221	198338222	rs61327788	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q33.1	NR	rs61327788-G	0.500638	1E-8		0.0395407	[0.026-0.053] unit increase	Affymetrix [17914406] (imputed)	N
2098	chr2	198370339	198370340	rs58335266	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q33.1	intergenic	rs58335266-G	0.364	6E-6		0.341	[0.19-0.49] unit increase	Illumina [at least 5086170] (imputed)	N
2098	chr2	198375328	198375329	rs7605813	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q33.1	NR	rs7605813-?	NR	5E-12		1.06791	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
2098	chr2	198383298	198383299	rs10211550	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q33.1	HSPE1-MOB4, MOB4	rs10211550-?		1E-8				NR [6786993] (imputed)	N
2098	chr2	198383298	198383299	rs10211550	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q33.1	BOLL, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MARS2, MOB4, PLCL1, RFTN2, SF3B1, SNORA105A, SNORA105B	rs10211550-?		7E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
2098	chr2	198395098	198395099	rs7601800	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q33.1	NR	rs7601800-T	0.3283	4E-13		1.047	[1.034-1.059]	Affymetrix [15688218] (imputed)	N
2098	chr2	198399962	198399963	rs2061146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	2q33.1		rs2061146-A	0.711502	2E-9		0.031157	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
2098	chr2	198438424	198438425	rs2340688	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	RFTN2	rs2340688-C	0.47319999999999995	6E-23		1.0369141		Affymetrix [11880941] (imputed)	N
2099	chr2	198456309	198456310	rs113964240	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q33.1	NR	rs113964240-?	NR	1E-9				Illumina [7427422] (imputed)	N
2099	chr2	198472885	198472886	rs6719483	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q33.1	NR	rs6719483-A	0.3229	1E-17				NR [9056863] (imputed)	N
2099	chr2	198474217	198474218	rs6723768	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q33.1	ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, HSPE1-MOB4, MOB4, RFTN2, AC011997.1, MARS2, BOLL, PLCL1	rs6723768-?		1E-11				NR [7428630] (imputed)	N
2099	chr2	198492315	198492316	rs72916919	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs72916919-?	NR	2E-7		5.193	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2099	chr2	198497734	198497735	rs62277866	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	2q33.1		rs62277866-?	NR	8E-6		2.00656	[1.7-2.31]	NR [663102]	N
2099	chr2	198518708	198518709	rs6733834	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.1	NA	rs6733834-C	0.8077	2E-12		0.015	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
2099	chr2	198529199	198529200	rs60640814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q33.1		rs60640814-C	NR	1E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2099	chr2	198529199	198529200	rs60640814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q33.1	RFTN2	rs60640814-C	0.676069	8E-10		0.014542625	[0.0099-0.0192] unit increase	Affymetrix [93095623] (imputed)	N
2099	chr2	198535677	198535678	rs4286272	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q33.1	NR	rs4286272-?	NR	4E-14				Affymetrix [~ 8270000] (imputed)	N
2099	chr2	198540352	198540354	rs148812496	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q33.1	BOLL, MARS2, PLCL1, RFTN2	rs148812496-A	0.49928	4E-6	(males)	0.01614	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2099	chr2	198540352	198540354	rs148812496	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q33.1	BOLL, MARS2, PLCL1, RFTN2	rs148812496-A	0.49928	3E-9		0.01698	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
2099	chr2	198540352	198540354	rs148812496	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q33.1	BOLL, MARS2, PLCL1, RFTN2	rs148812496-A	0.49928	8E-11		0.0147	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2099	chr2	198540352	198540354	rs148812496	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q33.1	BOLL, MARS2, PLCL1, RFTN2	rs148812496-A	0.49928	2E-7	(females)	0.0169	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2099	chr2	198540352	198540354	rs148812496	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	2q33.1	BOLL, MARS2, PLCL1, RFTN2	rs148812496-A	0.49928	1E-6	(males)	0.01222	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
2099	chr2	198544182	198544183	rs4422151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q33.1		rs4422151-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2099	chr2	198545863	198545864	rs75330306	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	2q33.1	RFTN2, MARS2	rs75330306-A	0.061	7E-6		1.03	[1.07-32.78]	Affymetrix [up to 27494467] (imputed)	N
2099	chr2	198551158	198551159	rs115670077	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	2q33.1	RFTN2, MARS2	rs115670077-T	NR	8E-7		1.43	[1.33-1.53]	Affymetrix, Illumina [~ 16900000] (imputed)	N
2099	chr2	198560622	198560623	rs371468817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q33.1		rs371468817-C	NR	2E-8		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2100	chr2	198576141	198576142	rs4850808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q33.1		rs4850808-?	NR	9E-8				NR [~ 8900000] (imputed)	N
2100	chr2	198587864	198587865	rs12472359	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	MARS2, BOLL	rs12472359-T	0.4767	1E-27		1.0407		Affymetrix [11880941] (imputed)	N
2100	chr2	198599232	198599233	rs700641	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q33.1	NR	rs700641-?	NR	5E-10				Illumina [7427422] (imputed)	N
2100	chr2	198608510	198608511	rs700646	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q33.1	NR	rs700646-T	0.668068	6E-13		0.014016	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2100	chr2	198613307	198613308	rs770667	32868391	Leng RX	2020-08-31	Ann Rheum Dis	Identification of new susceptibility loci associated with rheumatoid arthritis.	Rheumatoid arthritis	5,900 East Asian cases, 20,521 East Asian controls, 14,361 European ancestry cases, 43,923 European ancestry controls	NA	2q33.1	BOLL, PLCL1	rs770667-T		2E-8		1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
2100	chr2	198622635	198622636	rs700648	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q33.1	NA	rs700648-T	0.4962	5E-10		0.0101	[0.007-0.0132] unit increase	NR [~ 27400000] (imputed)	N
2100	chr2	198631713	198631714	rs700651	18997786	Bilguvar K	2008-11-09	Nat Genet	Susceptibility loci for intracranial aneurysm in European and Japanese populations.	Intracranial aneurysm	1,580 European ancestry cases, 6,276 European ancestry controls	495 Japanese ancestry cases, 676 Japanese ancestry controls	2q33.1	BOLL, PLCL1	rs700651-G	0.35	4E-8		1.24	[1.15-1.34]	Illumina [289271]	N
2100	chr2	198643630	198643631	rs700655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q33.1		rs700655-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2100	chr2	198646025	198646026	rs139236944	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	2q33.1	BOLL	rs139236944-G	0.061	9E-6		1.03	[1.07-32.64]	Affymetrix [up to 27494467] (imputed)	N
2100	chr2	198650258	198650259	rs771018	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	2q33.1	BOLL, PLCL1	rs771018-A	0.4712	3E-8				Affymetrix [15688218] (imputed)	N
2101	chr2	198735711	198735712	rs34608683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q33.1	PLCL1	rs34608683-G	NR	4E-9		0.0190712	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
2101	chr2	198740275	198740276	rs16825181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q33.1		rs16825181-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2101	chr2	198747536	198747537	rs57862683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q33.1	PLCL1	rs57862683-A	NR	8E-10		0.0190002	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
2101	chr2	198747536	198747537	rs57862683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	2q33.1	PLCL1	rs57862683-A	NR	2E-8		0.0173225	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
2101	chr2	198747536	198747537	rs57862683	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q33.1	NR	rs57862683-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
2101	chr2	198747536	198747537	rs57862683	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	PLCL1	rs57862683-G	0.5072	1E-27		1.0409076		Affymetrix [11880941] (imputed)	N
2101	chr2	198760506	198760507	rs6735214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	PLCL1	rs6735214-C	0.5141	7E-11	(154 ms)	0.0355696	[0.025-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2101	chr2	198760506	198760507	rs6735214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	PLCL1	rs6735214-C	0.5141	4E-8	(198 ms)	0.0306105	[0.02-0.041] unit increase	Affymetrix [10000000] (imputed)	N
2101	chr2	198760506	198760507	rs6735214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	PLCL1	rs6735214-C	0.5141	3E-8	(200 ms)	0.0304908	[0.02-0.041] unit increase	Affymetrix [10000000] (imputed)	N
2101	chr2	198760506	198760507	rs6735214	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	PLCL1	rs6735214-C	0.5141	2E-8	(182 ms)	0.0311048	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
2101	chr2	198783692	198783693	rs62277889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	2q33.1		rs62277889-T	0.465251	2E-8		0.0207576	[0.014-0.028] unit decrease	Illumina [13479178] (imputed)	N
2101	chr2	198783692	198783693	rs62277889	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q33.1	PLCL1	rs62277889-C	0.703219	2E-11		0.0105949	[0.0075-0.0137] unit increase	Affymetrix [12370749]	N
2101	chr2	198795203	198795204	rs4850817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs4850817-?	NR	6E-7		5.006	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2101	chr2	198807014	198807015	rs1518367	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	2q33.1	NR	rs1518367-T	NR	1E-8		1.0309278		NR [NR] (imputed)	N
2101	chr2	198807014	198807015	rs1518367	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q33.1	PLCL1	rs1518367-?		1E-11				NR [6786993] (imputed)	N
2101	chr2	198820155	198820155	rs548732586	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.1	PLCL1	rs548732586-T	0.6591	6E-19		0.018	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
2102	chr2	198841614	198841615	rs7571869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q33.1		rs7571869-C	0.265736	5E-8		0.0168657	[0.011-0.023] unit increase	Illumina [13479924] (imputed)	N
2102	chr2	198843089	198843090	rs59007763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q33.1	PLCL1	rs59007763-G	NR	2E-9		0.0193663	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
2102	chr2	198871416	198871417	rs1440088	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.1	NR	rs1440088-A	0.81	6E-7	(EA)	1.0840102		Affymetrix, Illumina [~ 9000000] (imputed)	N
2102	chr2	198874005	198874006	rs1595824	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q33.1	PLCL1	rs1595824-T	0.4693	3E-8		0.0336	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
2102	chr2	198874005	198874006	rs1595824	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q33.1	PLCL1	rs1595824-T	0.49	1E-10		1.08	[1.05-1.10]	Illumina [7427422] (imputed)	N
2102	chr2	198875463	198875464	rs1595825	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.1	NR	rs1595825-?	NR	4E-7	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2102	chr2	198881182	198881183	rs1025549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q33.1		rs1025549-?	NR	3E-19				NR [~ 8900000] (imputed)	N
2102	chr2	198881667	198881668	rs1016883	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q33.1	RFTN2, PLCL1	rs1016883-G	0.817	3E-8		1.1	[1.051-1.15]	Affymetrix, Illumina [1230000] (imputed)	N
2102	chr2	198887659	198887660	rs2139049	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q33.1	NR	rs2139049-G	0.5012	2E-11		1.0373445	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
2102	chr2	198889806	198889807	rs2196171	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	2q33.1	PLCL1	rs2196171-?	NR	5E-7		1.1235955	[1.08-1.18]	Illumina [at least 5000000] (imputed)	N
2102	chr2	198896894	198896895	rs6738825	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	2q33.1	HSPE1-MOB4, MOB4	rs6738825-A	0.502	2E-10		1.0734221	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
2102	chr2	198896894	198896895	rs6738825	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q33.1	PLCL1	rs6738825-?	NR	2E-7		1.098901	[1.05-1.14]	Illumina [at least 5000000] (imputed)	N
2102	chr2	198896894	198896895	rs6738825	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q33.1	MARS2, HSPE1-MOB4, MOB4, BOLL, RFTN2, AC011997.1, PLCL1	rs6738825-?		7E-8				Illumina [9560910] (imputed)	N
2102	chr2	198896894	198896895	rs6738825	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2q33.1	PLCL1	rs6738825-A	0.473	4E-9		1.06	[1.02-1.11]	Affymetrix, Illumina [953241] (imputed)	N
2102	chr2	198898717	198898718	rs17520121	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.1	NR	rs17520121-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
2102	chr2	198901394	198901395	rs1147169	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	2q33.1	PLCL1	rs1147169-T	NR	5E-9		1.369863	[1.1-1.69]	Affymetrix [~ 8000000] (imputed)	N
2102	chr2	198911165	198911166	rs67031482	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		2q33.1	PLCL1	rs67031482-?	0.48	4E-6				Illumina [4058415] (imputed)	N
2102	chr2	198914071	198914072	rs10497813	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	2q33.1	PLCL1	rs10497813-G	0.4825	6E-10		0.0734	[0.050-0.097] unit increase	Illumina [2400000] (imputed)	N
2102	chr2	198921200	198921201	rs1837495	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	PLCL1	rs1837495-G	NR	6E-9	(EA)	1.07	[1.05-1.09]	Illumina [6627481] (imputed)	N
2102	chr2	198921200	198921201	rs1837495	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs1837495-G	NR	7E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2102	chr2	198921603	198921604	rs11679484	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	2q33.1	PLCL1	rs11679484-A	NR	6E-8		1.12	[1.08-1.16]	Illumina [NR] (imputed)	N
2102	chr2	198929082	198929083	rs34388051	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q33.1	NR	rs34388051-A	0.7018	4E-8		0.06500347	[0.042-0.088] unit decrease	NR [NR]	N
2102	chr2	198929085	198929086	rs35657897	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2q33.1	NR	rs35657897-A	0.2962	1E-9		0.07150972	[0.048-0.095] unit increase	NR [NR]	N
2102	chr2	198929805	198929806	rs7572733	23983088	Miller FW	2013-08-27	Arthritis Rheum	Genome-wide association study of dermatomyositis reveals genetic overlap with other autoimmune disorders.	Dermatomyositis	1,178 European ancestry cases, 4,724 European ancestry controls	NA	2q33.1	PLCL1	rs7572733-?	NR	6E-6		1.25	[1.14-1.39]	Illumina [up to 242876]	N
2102	chr2	198929895	198929896	rs7573001	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q33.1	NR	rs7573001-G	0.418489	3E-8		0.035316203	[0.023-0.048] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2102	chr2	198929895	198929896	rs7573001	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q33.1	Intergenic	rs7573001-C	0.3817	2E-8		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
2102	chr2	198929895	198929896	rs7573001	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q33.1	NR	rs7573001-C	NR	1E-8		5.683	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
2102	chr2	198934872	198934873	rs74688411	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	3145 African American or Afro-Caribbean individuals	NA	2q33.1		rs74688411-G	0.018	8E-8		3.95	kg increase	NR [638486]	N
2102	chr2	198934872	198934873	rs74688411	34214102	Sarnowski C	2021-07-02	PLoS One	Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program.	Hand grip strength	13,552 European, African American or Afro-Caribbean, Hispanic or Latin American, Asian, Native American, Other ancestry individuals	NA	2q33.1		rs74688411-G	0.004	6E-9		3.84	kg increase	NR [638486]	N
2102	chr2	198943851	198943852	rs2164068	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q33.1	PLCL1	rs2164068-T	0.51	4E-10				NR [> 9500000] (imputed)	N
2102	chr2	198943851	198943852	rs2164068	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	2q33.1	PLCL1	rs2164068-T	0.5087	4E-14		1.0638298	[1.04-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
2102	chr2	198943851	198943852	rs2164068	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs2164068-?	NR	2E-7		5.213	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2102	chr2	198943851	198943852	rs2164068	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	2q33.1	PLCL1	rs2164068-?	NR	2E-10		1.051	[1.035-1.067]	Illumina [12845910] (imputed)	N
2102	chr2	198944270	198944271	rs6716898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q33.1		rs6716898-A	NR	1E-17		0.0167	[0.013-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2102	chr2	198944270	198944271	rs6716898	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q33.1		rs6716898-A	0.4838	2E-22		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q33.1		rs1064213-A	NR	2E-13		0.0126	[0.0093-0.0159] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.1	NR	rs1064213-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q33.1	NR	rs1064213-G	0.5211	6E-10		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.1	PLCL1	rs1064213-A	0.4826	4E-31		1.0425		Affymetrix [11880941] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q33.1	PLCL1	rs1064213-A	0.4826	4E-31		1.0454004		Affymetrix [11880941] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q33.1		rs1064213-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.1		rs1064213-?	NR	9E-14				NR [~ 8900000] (imputed)	N
2102	chr2	198950239	198950240	rs1064213	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q33.1	PLCL1	rs1064213-G	0.47	5E-12		1.035	[1.03-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
2102	chr2	198954773	198954774	rs11684176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q33.1		rs11684176-T	NR	3E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2102	chr2	198954773	198954774	rs11684176	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q33.1	NR	rs11684176-T	0.25	2E-14		1.146	[1.11-1.18]	Illumina [11270530] (imputed)	N
2102	chr2	198954773	198954774	rs11684176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.1		rs11684176-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2102	chr2	198954773	198954774	rs11684176	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q33.1	NR	rs11684176-?	NR	1E-9				Illumina [7427422] (imputed)	N
2102	chr2	198962242	198962243	rs7595412	18776929	Liu YZ	2008-09-08	PLoS One	Identification of PLCL1 gene for hip bone size variation in females in a genome-wide association study.	Hip bone size	501 European ancestry female individuals, 499 European ancestry male individuals	1,216 European ancestry female individuals	2q33.1	PLCL1	rs7595412-A	0.89	2E-6		5.0	[NR] cm2 increase in hip bone size on women	Affymetrix [306823]	N
2102	chr2	198964119	198964120	rs1036336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	2q33.1	NR	rs1036336-C	NR	4E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2102	chr2	198964119	198964120	rs1036336	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	2q33.1	PLCL1	rs1036336-T	0.488795	4E-9	(EA)	0.00729244	[0.0049-0.0097] unit increase	Affymetrix [~ 8800000] (imputed)	N
2103	chr2	198982063	198982063	rs5837581	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	2q33.1	NR	rs5837581-C	0.1468	9E-7		0.8376	[0.28-1.4] unit decrease	Illumina [at least 567677] (imputed)	N
2103	chr2	198987934	198987935	rs988583	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	2q33.1	PLCL1	rs988583-?	NR	6E-6				Illumina [874956]	N
2103	chr2	199033011	199033012	rs77075612	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q33.1	NR	rs77075612-?	NR	6E-6		0.164151	[0.093-0.235] unit decrease	NR [13958389] (imputed)	N
2103	chr2	199050087	199050088	rs75402199	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pericalcarine cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q33.1	NR	rs75402199-?		2E-6				Illumina [4322238] (imputed)	N
2103	chr2	199088529	199088530	rs7421388	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	2q33.1	PLCL1	rs7421388-G	0.79	2E-10		1.2987013	[NR]	Affymetrix [537798]	N
2103	chr2	199097153	199097154	rs1531180	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs1531180-?	NR	4E-7		5.092	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2104	chr2	199117569	199117570	rs147150305	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q33.1	Intergenic	rs147150305-A	0.984	4E-7	(liability model)	0.35	[0.21-0.49] unit decrease	NR [19725427] (imputed)	N
2104	chr2	199123726	199123727	rs6752643	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	2q33.1	PLCL1, SATB2	rs6752643-G	0.956	3E-9				NR [509413]	N
2104	chr2	199134290	199134291	rs140656686	31597446	Veluchamy A	2019-10-10	Arterioscler Thromb Vasc Biol	Novel Genetic Locus Influencing Retinal Venular Tortuosity Is Also Associated With Risk of Coronary Artery Disease.	Central retinal arteriolar equivalent	3,094 European ancestry individuals	NA	2q33.1	PLCL1	rs140656686-C	NR	5E-7		0.779	[0.48-1.08] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2104	chr2	199181699	199181699	rs201180996	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	2q33.1		rs201180996-GTA	NR	2E-6		3.53	[2.13-5.87]	Illumina [10838245] (imputed)	N
2104	chr2	199182324	199182325	rs12466968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q33.1	NR	rs12466968-T	NR	3E-10		0.031	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
2104	chr2	199216940	199216941	rs28568483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q33.1		rs28568483-T	NR	5E-28		0.0239	[0.02-0.028] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2105	chr2	199238012	199238013	rs6744584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs6744584-?	NR	9E-15				NR [~ 8900000] (imputed)	N
2105	chr2	199243371	199243372	rs2041081	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q33.1	LINC01923	rs2041081-C	0.354562	4E-36		0.00299873	[0.0025-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
2105	chr2	199243371	199243372	rs2041081	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q33.1	PLCL1, SATB2	rs2041081-T	0.65	9E-24		10.0	z-score increase	Affymetrix [4311822] (imputed)	N
2105	chr2	199323525	199323526	rs4502401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs4502401-T	0.6643	2E-9	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2105	chr2	199323525	199323526	rs4502401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs4502401-T	0.6542	8E-9		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2105	chr2	199323525	199323526	rs4502401	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs4502401-T	0.6542	2E-10	(MTAG)	0.0087	[0.006-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2106	chr2	199373755	199373756	rs4850850	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	2q33.1	Intergenic	rs4850850-T	NR	4E-6		0.108338	[0.062-0.154] unit decrease	Illumina [13520550] (imputed)	N
2106	chr2	199379343	199379344	rs11896635	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.1	NR	rs11896635-?	NR	3E-8				Affymetrix [NR]	N
2106	chr2	199385720	199385721	rs2054125	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment	up to 101,069 European ancestry individuals	25,490 European ancestry individuals	2q33.1	PLCL1	rs2054125-T	0.064	2E-7	(College)	1.376	[NR]	Affymetrix, Illumina, Perlegen [up to 2309290] (imputed)	N
2106	chr2	199427729	199427730	rs62179815	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	2q33.1	LOC101927619, SATB2	rs62179815-?	NR	5E-6	(EA)			Illumina [7205781] (imputed)	N
2106	chr2	199443879	199443880	rs13008687	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q33.1	AC019330.1	rs13008687-C	0.2553	4E-8		0.012846932	[0.0083-0.0174] unit increase	Affymetrix [up to 18485882] (imputed)	N
2106	chr2	199451091	199451092	rs7594192	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q33.1	intergenic	rs7594192-A	0.25	1E-7		0.026	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2107	chr2	199493710	199493711	rs12693853	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q33.1	Intergenic	rs12693853-C	0.5203	4E-19	(MTAG)	0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199493710	199493711	rs12693853	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q33.1	Intergenic	rs12693853-G	0.4797	2E-11		0.0132	[0.0093-0.0171] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2107	chr2	199495673	199495674	rs12477961	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	2q33.1	PLCL1	rs12477961-?	NR	3E-8		0.00642357	[0.0041-0.0087] unit increase	Affymetrix [NR] (imputed)	N
2107	chr2	199495829	199495830	rs10931821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs10931821-A	0.4852	9E-24		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2107	chr2	199497114	199497115	rs1455350	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q33.1	AC019330.1	rs1455350-A	NR	1E-8		0.011519	[0.0076-0.0155] unit decrease	Affymetrix [18485882] (imputed)	N
2107	chr2	199497114	199497115	rs1455350	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q33.1		rs1455350-?	NR	4E-19				NR [~ 8900000] (imputed)	N
2107	chr2	199497114	199497115	rs1455350	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs1455350-A	0.4862	2E-24	(conditional-joint)	0.0144	[0.012-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	2q33.1	NR	rs1455349-A	0.537567	1E-11		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q33.1	AC019330.1	rs1455349-G	0.4561	4E-14		0.015339769	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs1455349-A	0.5276	4E-32	(MTAG)	0.0195	[0.016-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q33.1	Intergenic	rs1455349-A	0.5276	2E-19		0.0205	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs1455349-A	0.5265	2E-32	(MTAG)	0.0155	[0.013-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199497284	199497285	rs1455349	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q33.1	Intergenic	rs1455349-A	0.5368	2E-20	(MTAG)	0.0213	[0.017-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199499355	199499356	rs11687833	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	2q33.1	NR	rs11687833-T	0.3941	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
2107	chr2	199504764	199504765	rs992005	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	2q33.1	ENSG00000225421	rs992005-?	NR	1E-8		5.727	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
2107	chr2	199514274	199514275	rs12693854	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q33.1	ENSG00000225421	rs12693854-A	NR	8E-10		0.018125555	[0.012-0.024] unit increase	Affymetrix [NR]	N
2107	chr2	199516058	199516059	rs1455344	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q33.1	NR	rs1455344-A	NR	5E-9		5.841	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
2107	chr2	199518158	199518159	rs13393754	32920024	Sanna M	2020-09-10	J Invest Dermatol	Looking for Sunshine: Genetic Predisposition to Sun-Seeking in 265,000 Individuals of European Ancestry.	Sun-seeking behavior	261,915 European ancestry individuals	NA	2q33.1	PLCL1, LINC01923, SATB2	rs13393754-T		4E-8				Affymetrix, Illumina [8385325] (imputed)	N
2107	chr2	199519653	199519654	rs140676665	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	2q33.1	AC019330.1	rs140676665-G	0.99	1E-7		7.142857	[3.45-14.29]	Affymetrix, Illumina [up to 7729175] (imputed)	N
2107	chr2	199519690	199519691	rs1455343	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	2q33.1	AC019330.1	rs1455343-T	0.38	2E-8		0.0062868	[0.0041-0.0085] unit decrease	NR [16367095] (imputed)	N
2107	chr2	199522857	199522858	rs9973442	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs9973442-?	NR	8E-8		5.37	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2107	chr2	199523121	199523122	rs17229285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q33.1	NR	rs17229285-T	0.505	3E-12		0.00753834	[0.0054-0.0097] unit decrease	NR [9732723] (imputed)	N
2107	chr2	199523121	199523122	rs17229285	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q33.1	NR	rs17229285-T	0.505	1E-9		0.015479556	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
2107	chr2	199523121	199523122	rs17229285	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.1	NR	rs17229285-G	0.4966	3E-14	(EA)	1.1000017	[1.08-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2107	chr2	199523121	199523122	rs17229285	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.1	NR	rs17229285-G	0.4966	8E-7	(EA)	1.0505787	[1.03-1.07]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2107	chr2	199523121	199523122	rs17229285	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q33.1	intergenic	rs17229285-C	0.496	2E-13		1.117	[1.079-1.157]	Affymetrix, Illumina [1230000] (imputed)	N
2107	chr2	199542717	199542718	rs1455335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q33.1		rs1455335-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2107	chr2	199560756	199560757	rs17229679	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q33.1	AC019330.1	rs17229679-?	NR	3E-17	(subset analysis)			Illumina [130052]	N
2107	chr2	199567686	199567687	rs6434978	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.1		rs6434978-T	0.5	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
2107	chr2	199567686	199567687	rs6434978	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q33.1	AC019330.1	rs6434978-?	NR	1E-10	(subset analysis)			Illumina [130052]	N
2107	chr2	199572780	199572781	rs1356493	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	2q33.1	ENSG00000225421	rs1356493-G	NR	3E-8		0.007524	[0.0049-0.0102] unit decrease	Affymetrix [18485882] (imputed)	N
2107	chr2	199581513	199581514	rs1878668	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q33.1	AC019330.1	rs1878668-G	0.494	6E-11		0.013243566	[0.0093-0.0172] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2107	chr2	199585555	199585556	rs16830366	23966867	Liu CT	2013-08-15	PLoS Genet	Genome-wide association of body fat distribution in African ancestry populations suggests new loci.	Waist circumference	Up to 23,564 African American individuals	Up to 10,027 African American individuals	2q33.1	SATB2	rs16830366-T	0.07	6E-6	(women)	0.09	[0.031-0.109] unit increase	Affymetrix, Illumina [3200000] (imputed)	N
2107	chr2	199601924	199601925	rs11893063	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	2q33.1	NR	rs11893063-A	0.47	9E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
2107	chr2	199601924	199601925	rs11893063	20308991	Kim S	2010-03-23	Mol Psychiatry	Integrative genome-wide association analysis of cytoarchitectural abnormalities in the prefrontal cortex of psychiatric disorders.	Brain cytoarchitecture	14 European ancestry bipolar cases, 15 European ancestry depression cases, 13 European ancestry schizophrenia cases, 14 European ancestry controls	NA	2q33.1	SATB2, PLCL1	rs11893063-?	0.46	2E-6				Affymetrix [309531]	N
2107	chr2	199602061	199602062	rs34335526	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs34335526-T	0.2104	2E-8	(MTAG)	0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199606418	199606419	rs4675429	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs4675429-T	0.7756	1E-9	(MTAG)	0.0095	[0.0064-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2107	chr2	199608287	199608288	rs35020808	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	2q33.1	SATB2	rs35020808-GT	0.5	5E-11	(japanese)	0.06	[0.04-0.08] year increase	Illumina [at least 532488] (imputed)	N
2107	chr2	199612406	199612407	rs11884596	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	2q33.1	NR	rs11884596-?	NR	2E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [> 10000000] (imputed)	N
2107	chr2	199612406	199612407	rs11884596	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	2q33.1	SATB2	rs11884596-C	0.3823	1E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
2107	chr2	199621640	199621641	rs10931831	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	2q33.1	NR	rs10931831-C	0.4638	1E-10	(Japanese)	0.058	[0.04-0.076] year increase	Illumina [at least 532488] (imputed)	N
2108	chr2	199625392	199625393	rs1518086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q33.1		rs1518086-?	NR	9E-37				NR [~ 8900000] (imputed)	N
2108	chr2	199632564	199632565	rs12617311	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	2q33.1	PLCL1	rs12617311-A	0.32	6E-13		3.0	[2.22-3.78] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2108	chr2	199638689	199638690	rs1400974	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	2q33.1	NR	rs1400974-G	0.5942	4E-9	(Japanese)	0.053	[0.035-0.071] year decrease	Illumina [at least 532488] (imputed)	N
2108	chr2	199638689	199638690	rs1400974	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q33.1	SATB2	rs1400974-A	0.64	8E-20		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2108	chr2	199640419	199640420	rs11680034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs11680034-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2108	chr2	199644037	199644038	rs17233066	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q33.1	SATB2	rs17233066-C	0.93	6E-11		0.09	[0.063-0.117] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2108	chr2	199647373	199647374	rs1518072	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.1	NR	rs1518072-?	NR	2E-8				Affymetrix [NR]	N
2108	chr2	199666110	199666111	rs13035389	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 53)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q33.1		rs13035389-C	0.451709402	3E-13				Illumina [7417619] (imputed)	N
2108	chr2	199666110	199666111	rs13035389	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q33.1	PLCL1, SATB2	rs13035389-?	NR	7E-20		1.139	[1.107-1.171]	Illumina [13537761] (imputed)	N
2108	chr2	199679109	199679110	rs10189905	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios	2q33.1	intergenic	rs10189905-?	NR	6E-7		1.32	[1.18-1.46]	Illumina [460528]	N
2108	chr2	199698668	199698669	rs1608945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q33.1		rs1608945-?	NR	2E-19				NR [~ 8900000] (imputed)	N
2108	chr2	199723364	199723365	rs1249096	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	SATB2	rs1249096-A	0.5634	4E-18		0.0207	[0.016-0.025] unit increase	Affymetrix [19819130] (imputed)	N
2108	chr2	199723364	199723365	rs1249096	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	SATB2	rs1249096-A	0.5634	2E-14		0.0181	[0.013-0.023] unit increase	Affymetrix [19819130] (imputed)	N
2108	chr2	199745017	199745018	rs1405108	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q33.1	AC018717.1	rs1405108-?	NR	8E-8	(subset analysis)			Illumina [130052]	N
2108	chr2	199745017	199745018	rs1405108	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.1	NR	rs1405108-C	0.3358	6E-10	(EA)	1.0854406	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2109	chr2	199769182	199769183	rs1456522	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	2q33.1	PLCL1, SATB2	rs1456522-?	NR	1E-9		0.028	[0.038-0.019] unit decrease	Illumina [12039492]	N
2109	chr2	199781585	199781586	rs983402	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	2q33.1	NR	rs983402-T	0.3151	8E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
2109	chr2	199783595	199783596	rs1526070	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q33.1		rs1526070-?	NR	6E-14				NR [~ 8900000] (imputed)	N
2109	chr2	199809715	199809716	rs966744	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	2q33.1	SATB2	rs966744-?		2E-10	(Parahippocampal)			Affymetrix, Illumina [NR] (imputed)	N
2109	chr2	199871030	199871031	rs12612141	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	2q33.1		rs12612141-G	0.327816	7E-7		1.1741	NR	Affymetrix [7846216] (imputed)	N
2109	chr2	199875096	199875097	rs1598656	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	2q33.1		rs1598656-A	NR	4E-10		0.02242069	[0.015-0.029] years increase	NR [7400000] (imputed)	N
2110	chr2	199885695	199885696	rs6711976	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	SATB2	rs6711976-T	0.670541	1E-20		0.0185063	[0.015-0.022] unit increase	NR [13737936] (imputed)	N
2110	chr2	199887146	199887147	rs1563486	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs1563486-?	NR	1E-9		0.0131904	[0.0089-0.0175] unit increase	Affymetrix [20259828] (imputed)	N
2110	chr2	199888021	199888022	rs3913345	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.1	NR	rs3913345-?	NR	1E-7				Affymetrix [NR]	N
2110	chr2	199921444	199921445	rs71424213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q33.1	Intergenic	rs71424213-T	0.9528	5E-9		0.0268	[0.018-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2110	chr2	199923726	199923727	rs148238535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q33.1	Intergenic	rs148238535-T	0.9659	2E-9	(MTAG)	0.0296	[0.02-0.039] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2110	chr2	199959446	199959447	rs115307848	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	2q33.1	intergenic	rs115307848-A	0.021	3E-8	(IL-8)	22.536	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
2110	chr2	199990106	199990107	rs1451488	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	2q33.1		rs1451488-?	NR	2E-11		0.023	NR unit increase	NR [4428082] (imputed)	N
2110	chr2	199990106	199990107	rs1451488	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q33.1	NR	rs1451488-?	NR	3E-9		1.0560108	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
2110	chr2	199990106	199990107	rs1451488	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q33.1	ENSG00000230407	rs1451488-?	NR	4E-8		0.010893398	[0.007-0.0148] unit increase	NR [7306098]	N
2110	chr2	199990106	199990107	rs1451488	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	LOC10041951	rs1451488-G	NR	1E-7	(EA)	1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
2110	chr2	199990106	199990107	rs1451488	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q33.1	SATB2	rs1451488-?	NR	5E-12		1.0695187	[1.05-1.09]	Illumina [8000000] (imputed)	N
2110	chr2	199990106	199990107	rs1451488	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs1451488-G	NR	6E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2110	chr2	199995045	199995046	rs1451486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs1451486-?	NR	1E-19				NR [~ 8900000] (imputed)	N
2110	chr2	200010474	200010475	rs16831047	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs16831047-A	NR	4E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
2110	chr2	200014482	200014483	rs12471454	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Insomnia	2,267 European ancestry individuals	NA	2q33.1	SATB2	rs12471454-T	0.41	6E-6		0.1	[0.061-0.139] unit decrease	Illumina [2380486] (imputed)	N
2111	chr2	200059211	200059212	rs78696503	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q33.1	SATB2	rs78696503-?		5E-8		1.0752687	[1.05-1.11]	Affymetrix, Illumina [NR]	N
2111	chr2	200087966	200087967	rs62178732	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	2q33.1	intergenic	rs62178732-G	0.9168610229735275	2E-6		1.3898541		Illumina [7574753] (imputed)	N
2111	chr2	200107966	200107967	rs114193689	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs114193689-C	0.9503	6E-10	(MTAG)	0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2111	chr2	200116935	200116936	rs260751	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)(bidirectional)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q33.1		rs260751-G	NR	9E-7				Affymetrix [7846216] (imputed)	N
2111	chr2	200119262	200119263	rs12476703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q33.1		rs12476703-?	NR	2E-17				NR [~ 8900000] (imputed)	N
2111	chr2	200121160	200121161	rs260755	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	2q33.1		rs260755-?	NR	3E-9		0.0178	NR unit increase	NR [4484088] (imputed)	N
2111	chr2	200131694	200131695	rs7593422	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	2q33.1	NR	rs7593422-T	0.55	4E-11		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
2111	chr2	200141874	200141875	rs932164491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q33.1		rs932164491-A	0.026439	4E-14		0.0501866	[0.037-0.063] unit decrease	Illumina [13479295] (imputed)	N
2112	chr2	200152197	200152198	rs17196295	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	2q33.1	NR	rs17196295-G	NR	3E-9		0.01563	[0.01-0.021] unit increase	Affymetrix [10847151] (imputed)	N
2112	chr2	200162424	200162425	rs895526	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SATB2	rs895526-C	NR	6E-7	(EA)	1.0742292	[1.05-1.1]	Illumina [6627481] (imputed)	N
2112	chr2	200162424	200162425	rs895526	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SATB2	rs895526-C	NR	3E-10		1.0718113	[1.05-1.09]	Illumina [6627481] (imputed)	N
2112	chr2	200162424	200162425	rs895526	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q33.1	SATB2	rs895526-C	NR	9E-10		1.0683761	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2112	chr2	200164251	200164252	rs6704641	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q33.1	NR	rs6704641-?	NR	4E-8				Illumina [up to 5582932] (imputed)	N
2112	chr2	200164251	200164252	rs6704641	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs6704641-A	NR	2E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
2112	chr2	200164251	200164252	rs6704641	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q33.1	SATB2	rs6704641-A	0.805	8E-9		1.081	[1.053-1.110]	Affymetrix, Illumina [9005918] (imputed)	N
2112	chr2	200214272	200214273	rs3828186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	NR	rs3828186-?	NR	3E-6		0.0079218	[0.0046-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
2112	chr2	200231735	200231736	rs2167006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs2167006-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2112	chr2	200243868	200243869	rs1446646	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.1		rs1446646-C	0.32	2E-9		5.98	z score increase	Affymetrix [9061022] (imputed)	N
2112	chr2	200275208	200275209	rs17266097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs17266097-T	0.3984	1E-8	(MTAG)	0.0096	[0.0063-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2112	chr2	200275208	200275209	rs17266097	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	2q33.1	SATB2	rs17266097-T	0.42	3E-18		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2113	chr2	200290358	200290359	rs1992950	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	2q33.1	SATB2	rs1992950-A	NR	5E-6		1.25		Illumina [266047]	N
2113	chr2	200300100	200300101	rs9646754	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	2q33.1	SATB2	rs9646754-T	0.034	2E-8	(IL-8)	20.001	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
2113	chr2	200312314	200312315	rs80158177	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	2q33.1	NR	rs80158177-?	NR	1E-6		0.3679	[-0.03253-0.76833]	Illumina [NR] (imputed)	N
2113	chr2	200321049	200321050	rs13014796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q33.1		rs13014796-A	NR	2E-21		0.0184	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2113	chr2	200321049	200321050	rs13014796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q33.1	Intergenic	rs13014796-A	0.1737	5E-26	(MTAG)	0.0249	[0.02-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2113	chr2	200323451	200323452	rs114693875	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q33.1	NR	rs114693875-G	0.1681	2E-11				NR [9056863] (imputed)	N
2113	chr2	200323451	200323452	rs114693875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs114693875-?	NR	2E-22				NR [~ 8900000] (imputed)	N
2113	chr2	200342748	200342749	rs4675617	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q33.1		rs4675617-A	0.18	4E-14		7.57	z score increase	Affymetrix [9061022] (imputed)	N
2113	chr2	200342748	200342749	rs4675617	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 18)	3,566 European ancestry individuals	4,680 European ancestry individuals	2q33.1		rs4675617-A	0.160281949	3E-13				Illumina [7417619] (imputed)	N
2113	chr2	200342748	200342749	rs4675617	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q33.1	Intergenic	rs4675617-A	0.1784	2E-21		0.0242	[0.019-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2113	chr2	200342748	200342749	rs4675617	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q33.1	Intergenic	rs4675617-A	0.1774	5E-18		0.0257	[0.02-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2113	chr2	200373260	200373261	rs35731967	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q33.1	NR	rs35731967-T	NR	2E-9		5.97	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
2113	chr2	200373260	200373261	rs35731967	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs35731967-?	NR	2E-6		4.774	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2113	chr2	200385661	200385662	rs72933453	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.1	NR	rs72933453-T	0.01045	3E-10	(CAT)	3.461	NR unit increase	Illumina [1671387] (imputed)	N
2113	chr2	200399052	200399053	rs6737075	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q33.1	NR	rs6737075-?		7E-9				NR [7428630] (imputed)	N
2113	chr2	200402623	200402624	rs17443541	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q33.1	Intergenic	rs17443541-T	0.81	4E-14	(MTAG)	0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2113	chr2	200402623	200402624	rs17443541	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q33.1	SATB2-AS1	rs17443541-T	NR	3E-8		0.021886546	[0.014-0.03] unit increase	Affymetrix [NR]	N
2114	chr2	200447030	200447031	rs13020883	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs13020883-A	0.1734	2E-23	(MTAG)	0.0218	[0.017-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2114	chr2	200450011	200450012	rs4675694	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs4675694-?	NR	2E-42		0.0355354	[0.03-0.041] unit decrease	Affymetrix [20259828] (imputed)	N
2114	chr2	200450011	200450012	rs4675694	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	LINC01877	rs4675694-C	0.173867	4E-12	(women)	0.0419869	[0.03-0.054] unit decrease	NR [17166351] (imputed)	N
2114	chr2	200450011	200450012	rs4675694	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	LINC01877	rs4675694-C	0.173537	6E-16		0.0352681	[0.027-0.044] unit decrease	NR [17166351] (imputed)	N
2114	chr2	200462839	200462840	rs6711399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs6711399-T	0.1779	1E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2114	chr2	200462839	200462840	rs6711399	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs6711399-T	0.1779	6E-14	(MTAG)	0.013	[0.0097-0.0163] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2114	chr2	200464559	200464560	rs13017811	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	LINC01877	rs13017811-G	0.831606	1E-50		0.0370766	[0.032-0.042] unit increase	NR [13737936] (imputed)	N
2114	chr2	200464559	200464560	rs13017811	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs13017811-?	NR	1E-42		0.0355628	[0.03-0.041] unit increase	Affymetrix [20259828] (imputed)	N
2114	chr2	200473657	200473658	rs12693889	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (polar light)	11,079 Korean women	5,940 Korean women	2q33.1	lnc01877	rs12693889-T	0.499	1E-9		0.56	unit increase	Illumina [366864] (imputed)	N
2114	chr2	200473657	200473658	rs12693889	32835660	Shin JG	2020-08-21	J Invest Dermatol	Genome-wide association analysis of 17,019 Korean women identifies variants associated with facial pigmented spots.	Facial pigmentation measurement (UV light)	11,079 Korean women	5,940 Korean women	2q33.1	lnc01877	rs12693889-T	0.499	2E-11		0.75	unit increase	Illumina [366864] (imputed)	N
2114	chr2	200473657	200473658	rs12693889	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs12693889-T	0.1764	5E-10	(conditional-joint)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2114	chr2	200487884	200487885	rs1961468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs1961468-?	NR	1E-36				NR [~ 8900000] (imputed)	N
2114	chr2	200504208	200504209	rs113658130	34184781	O'Connor E	2021-06-29	Ann Neurol	Genome Wide Association Study Identifies Risk Loci For Cluster Headache.	Cluster headache	1,443 European ancestry cases, 6,748 European ancestry controls	NA	2q33.1	LINC01877	rs113658130-C	0.69	2E-17		1.51	[1.27-1.66]	Illumina [NR] (imputed)	N
2114	chr2	200528809	200528810	rs6748653	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	2q33.1	LOC101927665	rs6748653-T	0.21	3E-6		3.025	[1.76-4.29] unit increase	Illumina [NR] (imputed)	N
2115	chr2	200560896	200560897	rs1077799	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 22)	19,670 European ancestry individuals	NA	2q33.1		rs1077799-?	NR	2E-9				NR [9705931] (imputed)	N
2115	chr2	200576766	200576767	rs76432012	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs76432012-?	NR	2E-8				NR [2625067]	N
2115	chr2	200576766	200576767	rs76432012	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs76432012-?	NR	4E-8		1.14843	[1.1-1.2]	Affymetrix, Illumina [12447948] (imputed)	N
2115	chr2	200576766	200576767	rs76432012	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs76432012-T	NR	2E-7		1.16	[NR]	Illumina [7158791] (imputed)	N
2115	chr2	200607332	200607333	rs11695675	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	2q33.1	LOC101927641, FTCDNL1	rs11695675-G	NR	3E-7		5.095	NR z score decrease	Illumina [7839440] (imputed)	N
2115	chr2	200616256	200616257	rs75260059	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	2q33.1	TYW5, SATB2	rs75260059-?	NR	9E-7		0.34	[0.20-0.48] unit increase	Illumina [1075436] (imputed)	N
2115	chr2	200638508	200638509	rs12615435	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all anthracycline-based drugs)	184 Japanese ancestry cases, 459 Japanese ancestry controls	NA	2q33.1	LOC348751	rs12615435-T	0.773	4E-6	(Allelic model)	2.214	[1.555-3.154]	Illumina [733202]	N
2116	chr2	200671902	200671903	rs76506302	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q33.1	intergenic	rs76506302-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
2116	chr2	200676925	200676926	rs7605378	21573128	Kou I	2011-05-15	PLoS One	Common variants in a novel gene, FONG on chromosome 2q33.1 confer risk of osteoporosis in Japanese.	Osteoporosis	190 Japanese ancestry cases, 1,557 Japanese ancestry controls	2,089 Japanese ancestry cases, 3,114 Japanese ancestry controls	2q33.1	LOC348751, FONG	rs7605378-?	0.56	2E-8		1.25	[1.16-1.35]	Perlegen [224507]	N
2116	chr2	200696445	200696446	rs10203122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs10203122-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2949006-?	NR	5E-14				NR [2625067]	N
2116	chr2	200715387	200715388	rs2949006	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs2949006-?	NR	2E-10				NR [2625067]	N
2116	chr2	200715387	200715388	rs2949006	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA			rs2949006-?	NR	1E-11		0.0205	NR unit decrease	NR [4484088] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA			rs2949006-?	NR	2E-10		0.0211	NR unit decrease	NR [4425810] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs2949006-T	0.1819	2E-13		0.10128129	[0.074-0.128] unit increase	NR [NR]	N
2116	chr2	200715387	200715388	rs2949006	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA		NR	rs2949006-T	0.193118	1E-10		0.015403	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA		NR	rs2949006-?	NR	3E-18		1.09615	[1.08-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		FTCDNL1	rs2949006-?	NR	3E-13		0.019905087	[0.015-0.025] unit decrease	NR [7306098]	N
2116	chr2	200715387	200715388	rs2949006	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		C2orf47, C2orf69, FTCDNL1, TYW5, SPATS2L	rs2949006-?	NR	4E-17		1.105	[1.08-1.13]	Illumina [8000000] (imputed)	N
2116	chr2	200715387	200715388	rs2949006	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios		C2orf47, SPATS2L, FONG, C2orf69, TYW5	rs2949006-T	0.192	1E-8		1.102	[1.07-1.14]	Affymetrix, Illumina [9871789]	N
2116	chr2	200716118	200716119	rs796364	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	2q33.1		rs796364-?	NR	5E-10		0.0213	NR unit decrease	NR [4428082] (imputed)	N
2116	chr2	200716118	200716119	rs796364	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q33.1	NR	rs796364-?		3E-13				NR [8377093]	N
2116	chr2	200716118	200716119	rs796364	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	FONG	rs796364-C	NR	5E-14	(EA)	1.1088934	[1.08-1.14]	Illumina [6627481] (imputed)	N
2116	chr2	200716118	200716119	rs796364	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	FONG	rs796364-C	NR	1E-14		1.0928961	[1.07-1.12]	Illumina [6627481] (imputed)	N
2116	chr2	200716118	200716119	rs796364	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q33.1	ERGIC3, FONG, TYW5	rs796364-C	NR	2E-16		1.0964912	[1.07-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2116	chr2	200725472	200725473	rs71424239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q33.1		rs71424239-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2116	chr2	200730027	200730028	rs769950	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q33.1	NR	rs769950-?		3E-11				NR [520857]	N
2116	chr2	200736506	200736507	rs11693528	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q33.1	C2orf69, TYW5	rs11693528-?		1E-12				NR [6786993] (imputed)	N
2116	chr2	200736506	200736507	rs11693528	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q33.1	NR	rs11693528-?	NR	3E-14				Illumina [up to 5582932] (imputed)	N
2116	chr2	200760628	200760629	rs1704190	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q33.1	C2orf69	rs1704190-G	0.364025	5E-9		0.00833069	[0.0055-0.0111] unit decrease	Affymetrix [12370749]	N
2116	chr2	200760628	200760629	rs1704190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.1		rs1704190-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2116	chr2	200764043	200764044	rs150640115	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q33.1	C2orf69	rs150640115-C	0.0166295925078177	2E-7	(G_unclassified_P_Firmicutes_HB)	1.19357	[0.75-1.64] unit decrease	Illumina [7711310] (imputed)	N
2116	chr2	200768490	200768491	rs56155997	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	NR	rs56155997-?	NR	7E-7		0.008509	[0.0051-0.0119] unit increase	Affymetrix [805426] (imputed)	N
2116	chr2	200775743	200775744	rs1124639	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q33.1	NA	rs1124639-T	0.4392	7E-11		0.0113	[0.008-0.0146] unit decrease	NR [~ 27400000] (imputed)	N
2116	chr2	200778129	200778130	rs191220855	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	2q33.1	NR	rs191220855-?	NR	3E-7		0.0843	[0.052-0.116] unit decrease	Illumina [at least 560000] (imputed)	N
2117	chr2	200807600	200807600	rs397686872	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q33.1		rs397686872-AT	NR	5E-9		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2117	chr2	200825239	200825240	rs281768	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q33.1	NR	rs281768-?		6E-11				NR [8377093]	N
2117	chr2	200825239	200825240	rs281768	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q33.1	C2orf47, C2orf69, FTCDNL1, SPATS2L, TYW5	rs281768-A		3E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [NR]	N
2117	chr2	200825239	200825240	rs281768	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs281768-A	NR	2E-14		1.11	[NR]	Illumina [7158791] (imputed)	N
2117	chr2	200829208	200829208	rs5837717	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	2q33.1	NR	rs5837717-C	0.215708	2E-8		1.006	[1.004, 1.008]	Affymetrix [39302896] (imputed)	N
2117	chr2	200859248	200859249	rs17445774	28046027	Kim T	2017-01-03	PLoS One	Genome-Wide Association Study Reveals Four Loci for Lipid Ratios in the Korean Population and the Constitutional Subgroup.	LDL cholesterol to HDL cholesterol ratio	5,292 Korean ancestry individuals	2,567 Korean ancestry individuals	2q33.1	C2orf47	rs17445774-?	NR	9E-9		0.1843	[0.12-0.25] unit increase	Affymetrix [310746]	N
2117	chr2	200904057	200904058	rs17629496	32133506	Li H	2020-03-05	Schizophr Bull	Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.	Creativity	4,664 Han Chinese ancestry individuals	NA	2q33.1	C2orf47	rs17629496-C		6E-6		8.69	[NR] unit decrease	Illumina [up to 5481607] (imputed)	N
2118	chr2	200936398	200936399	rs3115418	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q33.1	NR	rs3115418-C	0.454	3E-8		0.01422488	[0.0092-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
2118	chr2	200941596	200941597	rs3115423	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs3115423-?	NR	1E-6		4.845	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2118	chr2	200948593	200948594	rs3094759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q33.1		rs3094759-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2118	chr2	200955822	200955823	rs12470989	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q33.1	TYW5, C2orf69, MAIP1, SPATS2L	rs12470989-G	NR	2E-8		0.876	[0.57-1.18] unit increase	Affymetrix [14661600] (imputed)	N
2118	chr2	200978932	200978933	rs116755292	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs116755292-?	NR	4E-11				NR [~ 8900000] (imputed)	N
2118	chr2	200986344	200986345	rs7588746	29121268	Amare AT	2017-11-09	JAMA Psychiatry	Association of Polygenic Score for Schizophrenia and HLA Antigen and Inflammation Genes With Response to Lithium in Bipolar Affective Disorder: A Genome-Wide Association Study.	Bipolar disorder lithium response (continuous) or schizophrenia	2,366 European ancestry lithium treated bipolar disorder cases, 220 Asian ancestry lithium treated bipolar disorder cases, 36,989 schizophrenia cases, controls (see Ripke et al 2014 PMID:25056061)	NA	2q33.1	MAIP1	rs7588746-A		4E-8				NR [NR] (imputed)	N
2118	chr2	201000522	201000523	rs75523874	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q33.1	NR	rs75523874-C	0.154	7E-13		0.0110063	[0.008-0.014] unit increase	NR [9732723] (imputed)	N
2118	chr2	201000955	201000956	rs9677594	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q33.1	NR	rs9677594-C	0.155	3E-9		0.0121101	[0.0081-0.0161] unit decrease	NR [9732723] (imputed)	N
2118	chr2	201003836	201003837	rs1106399	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	2q33.1	SPATS2L, TYW5	rs1106399-?	NR	3E-7	(AA)	10.5	[6.58-14.42] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2118	chr2	201021953	201021954	rs1569175	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	2q33.1	C2orf47	rs1569175-T	NR	9E-7		2.73	[1.52-4.93]	Affymetrix [476796]	N
2118	chr2	201053254	201053255	rs35102285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.1		rs35102285-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2119	chr2	201071988	201071989	rs201217624	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q33.1	NR	rs201217624-?	NR	1E-7		5.281	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2119	chr2	201073132	201073133	rs1534599	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q33.1		rs1534599-T	0.414	1E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
2119	chr2	201083597	201083598	rs1729412	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs1729412-C	0.4162	3E-8		0.0112888925	[0.0073-0.0153] unit increase	Affymetrix [up to 18485882] (imputed)	N
2119	chr2	201083597	201083598	rs1729412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs1729412-T	0.4224	4E-14		0.0107	[0.008-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2119	chr2	201083597	201083598	rs1729412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs1729412-T	0.4224	8E-15	(MTAG)	0.0103	[0.0078-0.0128] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2119	chr2	201083597	201083598	rs1729412	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	SPATS2L	rs1729412-?	NR	2E-10		0.011091	[0.0077-0.0145] unit decrease	Affymetrix [805426] (imputed)	N
2119	chr2	201086662	201086663	rs1729413	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q33.1		rs1729413-T	0.5456	7E-12		0.14596333	[0.1-0.19] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
2119	chr2	201086662	201086663	rs1729413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q33.1		rs1729413-?	NR	6E-10				NR [~ 8900000] (imputed)	N
2119	chr2	201102904	201102905	rs296797	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q33.1	SPATS2L	rs296797-T	0.405	2E-12		0.2161	[0.16-0.28] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2119	chr2	201118971	201118972	rs60106404	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	2q33.1	SPATS2L	rs60106404-?		2E-8				NR [7405822] (imputed)	N
2119	chr2	201137781	201137782	rs17630248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q33.1		rs17630248-?	NR	8E-13				NR [~ 8900000] (imputed)	N
2119	chr2	201146775	201146776	rs17630293	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SPATS2L	rs17630293-T	NR	4E-9		1.107	[1.07-1.14]	Illumina [6627481] (imputed)	N
2119	chr2	201146775	201146776	rs17630293	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q33.1	SPATS2L	rs17630293-T	NR	3E-12		1.124	[1.09-1.16]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2119	chr2	201148075	201148076	rs10931896	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Systolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals and 16,328 South Asian ancestry individuals	2q33.1	NR	rs10931896-T	0.356933798596746	7E-7		0.26762682	[0.16-0.37] mmHg increase	Affymetrix, Illumina, Perlegen [2127883] (imputed)	N
2119	chr2	201150039	201150040	rs295137	22792082	Himes BE	2012-07-05	PLoS Genet	Genome-wide association analysis in asthma subjects identifies SPATS2L as a novel bronchodilator response gene.	Asthma (bronchodilator response)	1,644 European ancestry cases	1,051 European ancestry cases	2q33.1	SPATS2L	rs295137-T	0.41	1E-6				Affymetrix, Illumina [4571615] (imputed)	N
2119	chr2	201158121	201158122	rs12612420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs12612420-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2119	chr2	201158121	201158122	rs12612420	19727025	De Moor MH	2009-09-02	Med Sci Sports Exerc	Genome-wide association study of exercise behavior in Dutch and American adults.	Leisure-time exercise behaviour	2,622 European ancestry individuals	NA	2q33.1	DNAPTP6	rs12612420-A	NR	8E-6		1.43	[1.22-1.67]	Affymetrix, Perlegen [~ 1600000] (imputed)	N
2119	chr2	201159987	201159988	rs295139	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.1	intergenic	rs295139-A	0.4129	1E-13		0.0141	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
2119	chr2	201160698	201160699	rs295140	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	2q33.1	NR	rs295140-T	NR	3E-7				Affymetrix [9800000]	N
2119	chr2	201160698	201160699	rs295140	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	2q33.1	SPATS2L	rs295140-T	0.423	4E-13		0.61	[0.45-0.77] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2119	chr2	201160770	201160771	rs1367858	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q33.1	NR	rs1367858-T	0.337999999999999	3E-10		0.071695566	[0.049-0.094] unit increase	NR [NR]	N
2119	chr2	201160770	201160771	rs1367858	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs1367858-T	NR	3E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
2119	chr2	201161290	201161291	rs59273177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	2q33.1		rs59273177-A	0.979962	3E-8		0.081905	[0.053-0.111] unit decrease	NR [11722792] (imputed)	N
2119	chr2	201163782	201163783	rs4673905	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	2q33.1		rs4673905-?	NR	4E-12				NR [7857346] (imputed)	N
2119	chr2	201163782	201163783	rs4673905	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	SPATS2L	rs4673905-?	NR	4E-12		0.012099	[0.0087-0.0155] unit increase	Affymetrix [805426] (imputed)	N
2119	chr2	201167853	201167854	rs6435048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.1	Intergenic	rs6435048-T	0.3329	1E-9	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2119	chr2	201167853	201167854	rs6435048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q33.1	Intergenic	rs6435048-T	0.3393	5E-9	(MTAG)	0.0141	[0.0094-0.0188] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2119	chr2	201168992	201168993	rs4673912	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q33.1	NR	rs4673912-T	0.385369	6E-9		0.0395345	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
2119	chr2	201168992	201168993	rs4673912	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	SPATS2L	rs4673912-?	NR	5E-9		0.010264	[0.0068-0.0137] unit increase	Affymetrix [805426] (imputed)	N
2119	chr2	201171190	201171191	rs10931898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	2q33.1		rs10931898-G	NR	7E-15		0.074	[0.055-0.093] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
2119	chr2	201171190	201171191	rs10931898	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Reaction time	111,483 European ancestry individuals	NA	2q33.1	SPATS2L	rs10931898-?	NR	3E-8		0.0241142	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
2119	chr2	201176070	201176071	rs17592552	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q33.1	NR	rs17592552-?	NR	1E-17		1.1353058	[1.11-1.16]	Affymetrix, Illumina [12447948] (imputed)	N
2119	chr2	201176070	201176071	rs17592552	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	2q33.1	NR	rs17592552-?	NR	2E-13		1.1363636		Affymetrix, Illumina [9938587] (imputed)	N
2119	chr2	201180022	201180023	rs3820888	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q33.1	SPATS2L	rs3820888-C	0.392	6E-24		1.07	[1.06-1.09]	Illumina [34740186] (imputed)	N
2119	chr2	201180084	201180085	rs3769477	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.1	KCTD18	rs3769477-?	NR	1E-6	(CE 16:0)	0.83380485	[0.5-1.17] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	9E-17	(202 ms)	0.04604	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	8E-19	(206 ms)	0.0490555	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	8E-19	(204 ms)	0.0487627	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	8E-17	(208 ms)	0.046474	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	8E-10	(136 ms)	0.0348483	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	7E-16	(188 ms)	0.0450856	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	7E-13	(158 ms)	0.0404203	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	7E-11	(144 ms)	0.0365131	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	6E-19	(222 ms)	0.0497288	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	5E-16	(180 ms)	0.0456901	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	5E-11	(150 ms)	0.0370323	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	4E-9	(130 ms)	0.0334532	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	4E-14	(186 ms)	0.0426958	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	4E-12	(156 ms)	0.0386342	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	4E-11	(138 ms)	0.0366767	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	3E-20	(220 ms)	0.0514425	[0.04-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	3E-16	(178 ms)	0.0456172	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	3E-16	(176 ms)	0.0457532	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	3E-14	(170 ms)	0.0426365	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-8	(128 ms)	0.0314344	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-20	(218 ms)	0.051752	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-19	(226 ms)	0.050513	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-19	(216 ms)	0.0499523	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-17	(240 ms)	0.0486753	[0.037-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-16	(198 ms)	0.045831	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-16	(196 ms)	0.0462368	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-16	(190 ms)	0.0459539	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-14	(184 ms)	0.0434405	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-14	(172 ms)	0.042537	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-14	(168 ms)	0.0426237	[0.032-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-13	(166 ms)	0.0410994	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-11	(146 ms)	0.0379986	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	2E-10	(140 ms)	0.0352727	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-9	(260 ms)	0.0359499	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-8	(134 ms)	0.0323642	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-19	(224 ms)	0.050515	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-16	(192 ms)	0.0459391	[0.035-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-15	(200 ms)	0.0447426	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-15	(182 ms)	0.0452893	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-14	(174 ms)	0.0434861	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201183887	201183888	rs7605146	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q33.1	SPATS2L	rs7605146-G	0.610054	1E-10	(142 ms)	0.0352741	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2119	chr2	201187315	201187316	rs78681500	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SPATS2L	rs78681500-C	NR	6E-9	(East Asian)	1.25	[1.17-1.33]	Illumina [6627481] (imputed)	N
2119	chr2	201187315	201187316	rs78681500	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q33.1	SPATS2L	rs78681500-T	NR	3E-10	(Chinese)	1.3315579	[1.24-1.42]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2120	chr2	201195601	201195602	rs295114	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q33.1	SPATS2L	rs295114-C	0.6	2E-20		1.07	[1.05-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2120	chr2	201195601	201195602	rs295114	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q33.1	SPATS2L	rs295114-C	0.59	4E-17	(EA)	1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2120	chr2	201206705	201206706	rs11890234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q33.1		rs11890234-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2120	chr2	201208691	201208692	rs985256	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q33.1	SPATS2L	rs985256-A	0.2185	5E-6		0.014	[0.0081-0.0199] unit increase	Affymetrix [19819130] (imputed)	N
2120	chr2	201208691	201208692	rs985256	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	SPATS2L	rs985256-A	0.2185	6E-10		0.0179	[0.012-0.024] unit increase	Affymetrix [19819130] (imputed)	N
2120	chr2	201208691	201208692	rs985256	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	SPATS2L	rs985256-A	0.2185	2E-7		0.0147	[0.0092-0.0202] unit increase	Affymetrix [19819130] (imputed)	N
2120	chr2	201222158	201222159	rs295145	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.1	NR	rs295145-?	NR	2E-19				Affymetrix [NR]	N
2120	chr2	201226861	201226862	rs2163548	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q33.1	SPATS2L	rs2163548-G	NR	9E-11	(EA)	1.1098778	[1.08-1.14]	Illumina [6627481] (imputed)	N
2120	chr2	201232861	201232862	rs296790	32682390	Wang W	2020-07-18	BMC Genomics	Heritability and genome-wide association analyses of fasting plasma glucose in Chinese adult twins.	Fasting plasma glucose	382 Chinese ancestry twin pairs	NA	2q33.1	SPATS2L	rs296790-?		2E-6				NR [7405822] (imputed)	N
2120	chr2	201232861	201232862	rs296790	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	SPATS2L	rs296790-?	NR	9E-11		0.011305	[0.0079-0.0147] unit decrease	Affymetrix [805426] (imputed)	N
2120	chr2	201240085	201240086	rs994280	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	2q33.1	SPATS2L	rs994280-A	NR	3E-8		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
2120	chr2	201247490	201247491	rs842828	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	2q33.1	SPATS2L	rs842828-C	0.91	2E-6	(men)	0.166	[0.097-0.235] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
2120	chr2	201254048	201254049	rs3820881	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chickenpox	107,769 European ancestry cases, 15,982 European ancestry controls	NA	2q33.1	NR	rs3820881-?	NR	2E-6		0.0774	[0.046-0.109] unit decrease	Illumina [at least 560000] (imputed)	N
2120	chr2	201270255	201270256	rs7605374	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.1	NR	rs7605374-?	NR	3E-6		0.0081324	[0.0047-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
2120	chr2	201303009	201303010	rs2028201	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence or chronic alcoholic pancreatitis or alcohol-related liver cirrhosis	1,331 German ancestry alcohol dependence cases, 1,110 German ancestry cases with chronic alcoholic pancreatitis, 400 European ancestry cases with alcohol-related liver cirrhosis, 3,684 German ancestry controls	NA	2q33.1	SPATS2L	rs2028201-T	0.3763	5E-6		1.183		Illumina [194024]	N
2120	chr2	201308116	201308117	rs1561296	32107650	Liu L	2020-02-27	Clin Transl Med	A trans-ethnic two-stage polygenetic scoring analysis detects genetic correlation between osteoporosis and schizophrenia.	Schizophrenia (MTAG)	1,627 Han Chinese ancestry individuals with osteoporosis-related bone measurements, 1,475 Han Chinese ancestry schizophrenia cases, 1,022 Han Chinese ancestry schizophrenia controls	NA	2q33.1	LOC101927741, SPATS2L	rs1561296-?	NR	7E-6	(MTAG including spine BMD data)	0.092	unit decrease	Affymetrix [NR]	N
2120	chr2	201308116	201308117	rs1561296	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.1	NR	rs1561296-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
2120	chr2	201323884	201323885	rs4674086	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio in non-diabetics	up to 46,051 European ancestry individuals	NA	2q33.1	SPATS2L, KCTD18, SGOL2	rs4674086-T	0.46	9E-6		0.028	[0.016-0.04] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
2121	chr2	201351874	201351875	rs61173913	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	2q33.1	KCTD18, SPATS2L	rs61173913-TA	0.87	3E-6		1.4925373		Affymetrix [at least 730985] (imputed)	N
2121	chr2	201354865	201354866	rs10203042	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.1	NR	rs10203042-A	0.01045	1E-8	(GYG2)	0.01279	NR unit increase	Illumina [1671387] (imputed)	N
2121	chr2	201357645	201357646	rs3835857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q33.1		rs3835857-A	0.234405	3E-8		0.0143132	[0.0093-0.0194] unit decrease	Illumina [13479295] (imputed)	N
2121	chr2	201412654	201412655	rs34771762	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	2q33.1	NR	rs34771762-G	NR	2E-6		0.249	[0.15-0.35] SD units decrease	NR [10700000] (imputed)	N
2122	chr2	201494911	201494912	rs2465658	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	2q33.1		rs2465658-?	NR	4E-6		2.015	[1.497-2.713]	Affymetrix [7975321] (imputed)	N
2122	chr2	201518043	201518044	rs75770912	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q33.1	AOX1	rs75770912-A	0.074	8E-6	(liability model)	0.14	[0.081-0.199] unit decrease	NR [19725427] (imputed)	N
2122	chr2	201522011	201522012	rs751854756	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q33.1	AOX1	rs751854756-T	0.0011	2E-6		2.2867	[1.34-3.23] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2122	chr2	201568432	201568433	rs2253612	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	2q33.1	AOX2P	rs2253612-C	0.09	8E-7		1.4285715	[1.29-1.57]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
2122	chr2	201578478	201578479	rs6707459	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2q33.1	AOX3P, AOX2P, AC007163.3	rs6707459-T	0.2267	6E-6		0.0378	[0.021-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2123	chr2	201648638	201648639	rs13430864	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	2q33.1	AOX2P	rs13430864-G	0.04	5E-7	(EA + AA - Dizziness)			Affymetrix [421789]	N
2123	chr2	201675531	201675531	rs3834130	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q33.1		rs3834130-CG	NR	6E-7		1.0695187	[1.04-1.1]	Affymetrix [7846216] (imputed)	N
2123	chr2	201683852	201683853	rs115798498	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2q33.1	NR	rs115798498-G	NR	6E-6		1.1780269	[1.1-1.26]	Affymetrix [5734850] (imputed)	N
2123	chr2	201686121	201686122	rs3815501	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Global cognition (Clinical Dementia Rating Scale Sum of Boxes)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	2q33.1		rs3815501-A	NR	3E-6		0.5692	[0.33-0.8] unit increase	NR [534934]	N
2123	chr2	201694676	201694677	rs193292207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q33.1	RNU6-31P	rs193292207-C	0.053257	1E-9		0.03060733	[0.021-0.04] unit increase	Affymetrix [93095623] (imputed)	N
2123	chr2	201714319	201714320	rs5837757	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs5837757-C	0.1716	1E-7	(EA)	0.0438	[0.028-0.06] unit increase	Illumina [~ 11800000] (imputed)	N
2124	chr2	201720171	201720172	rs112313977	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	2q33.1	NR	rs112313977-?	NR	4E-6		0.10749547	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
2124	chr2	201724359	201724360	rs12465952	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.1		rs12465952-?	NR	2E-17		1.12005	[1.09-1.15]	NR [685523]	N
2124	chr2	201724359	201724360	rs12465952	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2q33.1		rs12465952-?	NR	2E-12		1.06226	[1.05-1.08]	NR [688737]	N
2124	chr2	201738723	201738724	rs111315781	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	2q33.1	PPIL3, CLK1, NIF3L1, ORC2	rs111315781-?	NR	6E-7		0.61	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
2124	chr2	201743593	201743594	rs115635831	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	4,939 European ancestry cases, 14,352 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q33.1	PPIL3, CLK1, FAM126B, NDUFB3	rs115635831-?	0.015	1E-6		1.36	[1.20-1.54]	Illumina [10909381] (imputed)	N
2124	chr2	201792122	201792123	rs13406545	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	2q33.1	ORC2	rs13406545-T	0.18	5E-6	(female)	0.21	[0.11-0.31] unit increase	Illumina [7411206] (imputed)	N
2124	chr2	201819622	201819623	rs867275005	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	2q33.1		rs867275005-GAATA	0.04	4E-6				Illumina [NR] (imputed)	N
2125	chr2	201868304	201868305	rs112257290	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs112257290-A	0.058	2E-7	(EA)	0.07	[0.044-0.096] unit increase	Illumina [~ 11800000] (imputed)	N
2125	chr2	201889750	201889751	rs7591472	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	2q33.1	FAM126B, ORC2	rs7591472-?	NR	3E-6		0.59	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
2125	chr2	201909514	201909515	rs13015798	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2q33.1	FAM126B, CASP8	rs13015798-A	0.673	3E-8		1.2048193	[1.14-1.3]	Affymetrix, Illumina [~ 8500000] (imputed)	N
2125	chr2	201923481	201923482	rs80252786	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2q33.1	NR	rs80252786-C	NR	1E-6		1.1304622	[1.08-1.19]	Affymetrix [5734850] (imputed)	N
2125	chr2	201935870	201935871	rs114962751	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	2q33.1	FAM126B, NDUFB3, CLK1, PPIL3	rs114962751-?	0.02	7E-8		1.22	[1.05-1.42] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
2125	chr2	201979524	201979525	rs72931013	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.1	CFLAR	rs72931013-A	0.9792	6E-10		0.0411	[0.028-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
2126	chr2	202004675	202004676	rs6759004	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	2q33.1	CFLAR, FAM126B	rs6759004-?	NR	3E-7		0.63	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
2126	chr2	202004836	202004837	rs182731523	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs182731523-C	0.1861	8E-8	(EA)	0.0426	[0.027-0.058] unit increase	Illumina [~ 11800000] (imputed)	N
2126	chr2	202017407	202017408	rs73045343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q33.1		rs73045343-A	NR	1E-12		0.0247	[0.018-0.032] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2126	chr2	202023585	202023585	rs570154406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q33.1		rs570154406-ATTG	NR	5E-11		0.031	[0.022-0.04] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2126	chr2	202023948	202023949	rs7558911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q33.1		rs7558911-G	NR	1E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2126	chr2	202023948	202023949	rs7558911	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	2q33.1	CASP10, CASP8	rs7558911-A	NR	5E-11		1.18	[1.12-1.24]	Affymetrix, Illumina [> 10000000] (imputed)	N
2126	chr2	202025130	202025131	rs2518142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs2518142-A	0.88083	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
2126	chr2	202025130	202025131	rs2518142	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q33.1	NR	rs2518142-A	0.908983	2E-12		0.022238	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2126	chr2	202050676	202050677	rs3900115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs3900115-G	0.453841	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
2126	chr2	202060819	202060820	rs3731714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q33.1		rs3731714-T	NR	3E-10		0.0134	[0.0093-0.0175] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
2126	chr2	202060819	202060820	rs3731714	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q33.1	CASP10	rs3731714-C	0.68	1E-8		5.68	z-score increase	Affymetrix [4312306] (imputed)	N
2126	chr2	202060819	202060820	rs3731714	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or rheumatoid arthritis	2,492 European ancestry chronic lymphocytic leukemia cases, 3,921 European ancestry rheumatoid arthritis cases, 11,232 European ancestry controls	NA	2q33.1	CASP10	rs3731714-?	NR	7E-9		1.1550012		Illumina [~ 600000] (imputed)	N
2126	chr2	202060819	202060820	rs3731714	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	2q33.1	NR	rs3731714-T	0.2989	2E-6	(Cis/trans-18:2, EA)	0.0022	[0.0012-0.0032] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2126	chr2	202070734	202070735	rs6712872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q33.1	CASP10	rs6712872-T	0.527819	6E-11		0.014534385	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2126	chr2	202070734	202070735	rs6712872	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q33.1	NR	rs6712872-T	0.527899	4E-12		0.013442	[0.0097-0.0172] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2126	chr2	202082458	202082459	rs13006529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.1		rs13006529-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2126	chr2	202107232	202107233	rs10193121	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs10193121-C	0.453915	5E-16				Affymetrix, Illumina [24649327] (imputed)	N
2126	chr2	202111379	202111380	rs3769825	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q33.1	CASP8, CASP10	rs3769825-T	0.45	3E-9		1.19	[1.12-1.25]	Illumina [549934]	N
2126	chr2	202112366	202112366	rs80304785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q33.1		rs80304785-TA	NR	2E-8		0.0139	[0.009-0.0188] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2126	chr2	202112470	202112471	rs10931933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q33.1		rs10931933-T	NR	6E-12		0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2126	chr2	202112470	202112471	rs10931933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q33.1	CASP8	rs10931933-T	0.608701	4E-15		0.017830206	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2126	chr2	202112470	202112471	rs10931933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q33.1	NR	rs10931933-T	0.605269	4E-16		0.015422	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2126	chr2	202112470	202112471	rs10931933	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q33.1	CASP8	rs10931933-G	NR	1E-6		1.0573	NR	Affymetrix, Illumina [8278136] (imputed)	N
2126	chr2	202112470	202112471	rs10931933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q33.1		rs10931933-?	NR	2E-12				NR [~ 8900000] (imputed)	N
2127	chr2	202122994	202122995	rs3769823	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	2q33.1		rs3769823-G	0.7001342	8E-11		0.91		Affymetrix [15611556] (imputed)	N
2127	chr2	202122994	202122995	rs3769823	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2q33.1	ALS2CR12	rs3769823-G	NR	2E-13		1.16	[1.12-1.21]	Affymetrix [5734850] (imputed)	N
2127	chr2	202122994	202122995	rs3769823	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	2q33.1	NR	rs3769823-G	NR	2E-13		0.014924028	[0.011-0.019] unit increase	Illumina [242289]	N
2127	chr2	202122994	202122995	rs3769823	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	2q33.1	NR	rs3769823-G	0.7	8E-7		0.017	unit increase	Illumina [242289]	N
2127	chr2	202122994	202122995	rs3769823	28177523	Lin Y	2017-02-22	Int J Cancer	Association between genetic variation within vitamin D receptor-DNA binding sites and risk of basal cell carcinoma.	Basal cell carcinoma	17,187 European ancestry cases, 287,054 European ancestry controls	NA	2q33.1	CASP8	rs3769823-A	0.30	4E-18		1.12	[NR]	Affymetrix, Illumina [8262488] (imputed)	N
2127	chr2	202123429	202123430	rs3769821	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	2q33.1	NR	rs3769821-C	NR	4E-8		0.93	[0.9-0.95]	NR [NR] (imputed)	N
2127	chr2	202123429	202123430	rs3769821	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	2q33.1	NR	rs3769821-C	0.34	2E-7	(EA)	1.1	[1.06-1.14]	Illumina [~ 11000000] (imputed)	N
2127	chr2	202123429	202123430	rs3769821	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	2q33.1	CASP8	rs3769821-C	0.321	4E-8		1.08	[1.05-1.11]	Illumina [~ 11000000] (imputed)	N
2127	chr2	202123429	202123430	rs3769821	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs3769821-T	0.6683	4E-18	(EA)	0.0565	[0.044-0.069] unit decrease	Illumina [~ 11800000] (imputed)	N
2127	chr2	202123479	202123487	rs59308963	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q33.1	CASP8	rs59308963-T	0.73	2E-8		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
2127	chr2	202123487	202123495	rs398060951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q33.1		rs398060951-T	0.68466	3E-8		0.0197018	[0.013-0.027] unit increase	Illumina [13478928] (imputed)	N
2127	chr2	202123717	202123717	rs10635401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q33.1	NR	rs10635401-CAAGT	NR	1E-10		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2127	chr2	202124501	202124502	rs6735656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q33.1	CASP8	rs6735656-T	0.746	2E-19		0.03728797	[0.029-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
2127	chr2	202126614	202126615	rs1861270	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	2q33.1	CASP8	rs1861270-?	NR	3E-9		0.0475	NR L decrease	Affymetrix [9390170] (imputed)	N
2127	chr2	202126614	202126615	rs1861270	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q33.1	NR	rs1861270-G	NR	5E-11		1.049	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
2127	chr2	202138384	202138385	rs13030042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q33.1		rs13030042-C	NR	5E-26		0.023	[0.019-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2127	chr2	202138384	202138385	rs13030042	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q33.1		rs13030042-T	0.348	1E-17				Affymetrix [10369434] (imputed)	N
2127	chr2	202143927	202143928	rs10931936	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.1		rs10931936-?	NR	1E-44		1.18113	[1.16-1.2]	NR [685523]	N
2127	chr2	202143927	202143928	rs10931936	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2q33.1		rs10931936-?	NR	4E-26		1.0845	[1.07-1.1]	NR [688737]	N
2127	chr2	202143927	202143928	rs10931936	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	2q33.1		rs10931936-?	NR	6E-6		1.07496	[1.04-1.11]	NR [682398]	N
2127	chr2	202143927	202143928	rs10931936	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q33.1	NR	rs10931936-T	0.3	2E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
2127	chr2	202143927	202143928	rs10931936	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q33.1	CASP8	rs10931936-C	0.731538	8E-27		0.027272532	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr2	202143927	202143928	rs10931936	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	2q33.1	CASP8	rs10931936-T	0.281044	2E-12		1.0774	NR	Affymetrix, Illumina [NR] (imputed)	N
2127	chr2	202150913	202150914	rs35550815	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Caspase 8 levels	21,758 European ancestry individuals	9,173 individuals	2q33.1		rs35550815-A	0.87	4E-31		0.1807	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2127	chr2	202151162	202151163	rs3769818	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2q33.1	CASP8	rs3769818-A	0.267833	7E-47		0.17051235	[0.15-0.19] unit increase	Affymetrix [7260263] (imputed)	N
2127	chr2	202151162	202151163	rs3769818	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs3769818-G	0.719772	2E-49				Affymetrix, Illumina [23472807] (imputed)	N
2127	chr2	202151399	202151400	rs17860428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q33.1	NR	rs17860428-A	0.179529	1E-10		0.015614	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2127	chr2	202151438	202151439	rs3185378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q33.1	CASP8	rs3185378-C	0.640808	6E-16		0.018630931	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2127	chr2	202153077	202153078	rs1035142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q33.1		rs1035142-G	0.657757811	3E-9		0.12015145	[0.081-0.16] unit decrease	Illumina [13401000] (imputed)	N
2127	chr2	202153077	202153078	rs1035142	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q33.1	ALS2CR12	rs1035142-G	0.6394	7E-12		0.02538182	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2127	chr2	202153224	202153225	rs700635	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q33.1		rs700635-A	NR	5E-16		0.088	[0.067-0.109] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
2127	chr2	202153224	202153225	rs700635	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	2q33.1	CASP8/ALS2CR12	rs700635-A	0.7233	2E-8				NR [7320282]	N
2127	chr2	202153683	202153684	rs6714430	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2q33.1	ALS2CR12	rs6714430-C	0.719249	5E-55		1.1494253	[1.12-1.18]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2127	chr2	202153919	202153920	rs6743068	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q33.1	NR	rs6743068-G	0.729732	2E-49		0.031438	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2127	chr2	202153919	202153920	rs6743068	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	2q33.1	ALS2CR12	rs6743068-A	NR	2E-7		1.0869565	[1.05-1.12]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2127	chr2	202153919	202153920	rs6743068	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2q33.1	ALS2CR12	rs6743068-A	0.267023	2E-48		1.1494253	[1.12-1.16]	Affymetrix [7600000] (imputed)	N
2127	chr2	202153919	202153920	rs6743068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q33.1	ALS2CR12	rs6743068-G	0.7307	1E-12		0.0284983	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2127	chr2	202154396	202154397	rs6715284	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.1	CFLAR, CASP8	rs6715284-G	NR	5E-7		0.122657	[0.075-0.17] unit increase	Illumina [8380626] (imputed)	N
2127	chr2	202154396	202154397	rs6715284	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.1	CFLAR, CASP8	rs6715284-G	0.1	3E-7	(EA)	0.12901	[0.08-0.178] unit increase	Illumina [8380626] (imputed)	N
2127	chr2	202154396	202154397	rs6715284	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.1	CASP8, CFLAR	rs6715284-G	0.1	3E-9	(EA)	1.15	[1.10-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2127	chr2	202154396	202154397	rs6715284	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.1	CASP8, CFLAR	rs6715284-G	0.1	2E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2127	chr2	202160761	202160762	rs75507031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q33.1	ALS2CR12	rs75507031-T	0.732048	1E-19		0.022630492	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr2	202162810	202162811	rs13016963	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	2q33.1	CASP8	rs13016963-A	0.38	9E-10		1.14	[NR]	Illumina [at least 560000] (imputed)	N
2127	chr2	202162810	202162811	rs13016963	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	2q33.1	CASP8, ALS2CR12	rs13016963-A	0.283	4E-13		1.27	[1.19-1.33]	Affymetrix, Illumina [7556215] (imputed)	N
2127	chr2	202162810	202162811	rs13016963	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	2q33.1	CASP8	rs13016963-A	0.37	9E-10		1.14	[1.09-1.19]	Illumina [594997]	N
2127	chr2	202165205	202165206	rs2080303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2q33.1		rs2080303-C	NR	3E-37		0.1375	[0.12-0.16] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
2127	chr2	202165205	202165206	rs2080303	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	2q33.1	ALS2CR12	rs2080303-T	0.32	7E-19		1.13	[NR]	Illumina [at least 560000] (imputed)	N
2127	chr2	202169131	202169132	rs6712091	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q33.1	ALS2CR12	rs6712091-C	0.6432	1E-9		0.02308301	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2127	chr2	202170654	202170655	rs10200279	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	2q33.1	CASP8	rs10200279-T	0.29073	3E-12				Affymetrix, Illumina [NR] (imputed)	N
2127	chr2	202170654	202170655	rs10200279	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q33.1	ALS2CR12	rs10200279-T	0.279906	2E-9		1.0294324	NR	Affymetrix [~ 9600000] (imputed)	N
2127	chr2	202170654	202170655	rs10200279	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	2q33.1	ALS2CR12	rs10200279-T	0.287	3E-9		0.07	[0.05-0.09] unit increase	NR [13607369] (imputed)	N
2127	chr2	202176293	202176294	rs7582362	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	2q33.1	CASP8	rs7582362-?	NR	4E-6				Affymetrix, Illumina [7850345] (imputed)	N
2127	chr2	202179010	202179011	rs6731171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q33.1		rs6731171-A	NR	2E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2127	chr2	202179010	202179011	rs6731171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q33.1	NR	rs6731171-A	NR	2E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2127	chr2	202181246	202181247	rs1830298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q33.1	ALS2CR12	rs1830298-T	0.731387	1E-40		0.033238474	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr2	202181246	202181247	rs1830298	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q33.1		rs1830298-C	NR	9E-14		1.0961	NR	Affymetrix [7846216] (imputed)	N
2127	chr2	202181246	202181247	rs1830298	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q33.1		rs1830298-T	NR	6E-24		0.94	[0.93-0.95]	Affymetrix, Illumina [NR] (imputed)	N
2127	chr2	202181246	202181247	rs1830298	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	CASP8, ALS2CR12	rs1830298-C	0.28	2E-16		1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2127	chr2	202181246	202181247	rs1830298	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q33.1	NR	rs1830298-C	0.28	7E-7		1.08	[1.04-1.12] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
2127	chr2	202185131	202185132	rs2110690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q33.1		rs2110690-G	NR	7E-14		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2127	chr2	202185131	202185132	rs2110690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q33.1	ALS2CR12	rs2110690-G	0.505741	1E-18		0.019875044	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2127	chr2	202185131	202185132	rs2110690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs2110690-G	0.528466	9E-23				Affymetrix, Illumina [24588908] (imputed)	N
2127	chr2	202185131	202185132	rs2110690	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q33.1	NR	rs2110690-G	0.502294	1E-21		0.0175	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2127	chr2	202185131	202185132	rs2110690	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q33.1	ALS2CR12	rs2110690-A	0.494965	4E-8		0.0108794	[0.007-0.0148] unit decrease	Affymetrix [NR] (imputed)	N
2127	chr2	202186985	202186986	rs2349073	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q33.1		rs2349073-C	NR	4E-18		1.088	[1.067-1.109]	Affymetrix [7846216] (imputed)	N
2127	chr2	202202790	202202791	rs10201587	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal cancer	1,388 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	2q33.1		rs10201587-G	0.656574689	1E-8		0.23156422	[0.15-0.31] unit decrease	Illumina [13427188] (imputed)	N
2127	chr2	202212367	202212367	rs564608706	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	2q33.1		rs564608706-A	0.697837	3E-8		0.0287501	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
2127	chr2	202215491	202215492	rs13014235	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	2q33.1	ALS2CR12, CASP8, CASP10	rs13014235-C	0.456	2E-9		1.15	[1.10-1.20]	Illumina [24988228] (imputed)	N
2127	chr2	202235942	202235943	rs13036109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q33.1		rs13036109-C	NR	1E-21		0.0185	[0.015-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2127	chr2	202241906	202241907	rs10202963	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2q33.1	NR	rs10202963-G	NR	9E-9		1.11491	[1.07426-1.15709]	Affymetrix [5734850] (imputed)	N
2128	chr2	202249707	202249708	rs2714486	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs2714486-T	0.1738	7E-10	(EA)	0.0498	[0.034-0.066] unit increase	Illumina [~ 11800000] (imputed)	N
2128	chr2	202252538	202252539	rs2244438	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.1		rs2244438-?	NR	3E-22		1.11935	[1.1-1.14]	NR [685523]	N
2128	chr2	202252538	202252539	rs2244438	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2q33.1		rs2244438-?	NR	1E-6		1.03684	[1.02-1.05]	NR [688737]	N
2128	chr2	202256693	202256694	rs10188036	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder x change in residence interaction	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	2q33.1	TRAK2	rs10188036-?	NR	3E-8	(DSM-5 criterion count, AA)	5.544	[NR] z score increase	Illumina [up to 47104916] (imputed)	N
2128	chr2	202345475	202345476	rs2110748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs2110748-?	NR	4E-15				NR [~ 8900000] (imputed)	N
2128	chr2	202346326	202346327	rs2714493	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q33.1	intergenic	rs2714493-T	NR	1E-6	(AA)			Illumina [up to 11995908] (imputed)	N
2128	chr2	202351921	202351922	rs77580183	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Ferritin levels	2,649 European ancestry individuals	NA	2q33.1	ALS2CR11	rs77580183-A	0.016	2E-6		0.4	[0.56-0.23] unit decrease	Affymetrix [7435577] (imputed)	N
2128	chr2	202354664	202354665	rs2540435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.1		rs2540435-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2128	chr2	202367588	202367589	rs77688320	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		2q33.1	NR	rs77688320-T	NR	2E-6		1.1271746	[1.07-1.18]	Affymetrix [5734850] (imputed)	N
2128	chr2	202367588	202367589	rs77688320	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs77688320-G	0.1668	3E-9	(EA)	0.0489	[0.033-0.065] unit increase	Illumina [~ 11800000] (imputed)	N
2128	chr2	202367620	202367621	rs2540431	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	2q33.1	TRAK2, ALS2CR11	rs2540431-T	0.313	2E-8		1.131	[1.083-1.181]	Illumina [4946503] (imputed)	N
2128	chr2	202369187	202369188	rs77508965	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.1		rs77508965-?	NR	5E-10		1.15139	[1.11-1.2]	NR [685523]	N
2128	chr2	202369187	202369188	rs77508965	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	2q33.1		rs77508965-?	NR	9E-6		1.06836	[1.04-1.1]	NR [688737]	N
2128	chr2	202373159	202373160	rs2714491	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q33.1	ALS2CR11	rs2714491-T	NR	1E-6				Illumina [up to 11995908] (imputed)	N
2128	chr2	202373538	202373538	rs34008761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q33.1	ALS2CR11	rs34008761-CT	0.340832	3E-9		0.014006711	[0.0094-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
2129	chr2	202379923	202379923	rs768067657	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q33.1	NR	rs768067657-TAA	NR	1E-9		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2129	chr2	202456145	202456146	rs9677369	31490055	Sun J	2019-09-06	Can J Surg	A genome-wide association study of cocaine use disorder accounting for phenotypic heterogeneity and gene-environment interaction	Cocaine use disorder	2,070 African American individuals, 1,570 European ancestry individuals	918 African American individuals, 1,382 European ancestry individuals	2q33.1	NR	rs9677369-?	NR	4E-6	(DSM-5 criterion count, AA)	4.634	[NR] z score decrease	Illumina [up to 47104916] (imputed)	N
2129	chr2	202501447	202501448	rs1208081	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.1		rs1208081-?	NR	5E-9		0.935473	[0.91-0.96]	NR [685523]	N
2129	chr2	202505544	202505545	rs56321285	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q33.1	NR	rs56321285-A	0.31	7E-9		0.9	[0.86-0.94]	Illumina [8468885] (imputed)	N
2129	chr2	202505988	202505989	rs55902839	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	2q33.1	TMEM237	rs55902839-A	0.456642977	1E-6		1.0806478	[1.047380336-1.114971905]	Illumina [10439017] (imputed)	N
2129	chr2	202505988	202505989	rs55902839	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q33.1	TMEM237	rs55902839-A	0.473484973	7E-6		1.0581545	[1.032311012-1.08464492]	Illumina [10439017] (imputed)	N
2130	chr2	202512448	202512449	rs11894115	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	2q33.1	MPP4	rs11894115-T	0.395	5E-6	(adjusted)			NR [346946]	N
2130	chr2	202531263	202531264	rs62193398	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q33.1	NR	rs62193398-C	0.4196	1E-7	(EA)	0.0332	[0.021-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
2130	chr2	202531546	202531547	rs7559992	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	White matter microstructure in first episode schizophrenia (left inferior parietal cortex)	93 Han Chinese cases, 134 Han Chinese controls	NA	2q33.1	MPP4	rs7559992-?	NR	9E-8		0.03	unit decrease	Illumina [6055918] (imputed)	N
2130	chr2	202548603	202548604	rs57978791	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	2q33.1	MPP4	rs57978791-T	0.022	6E-8		0.19	NR unit increase	Illumina [6417232] (imputed)	N
2130	chr2	202600116	202600117	rs2192762	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of sweet substances	1,757 European ancestry twins	NA	2q33.1	ALS2	rs2192762-A	0.73	6E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
2130	chr2	202600116	202600117	rs2192762	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	2q33.1	ALS2	rs2192762-A	0.73	6E-6		0.18	[0.1-0.26] unit increase	Illumina [4381914] (imputed)	N
2131	chr2	202748439	202748440	rs112621228	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs112621228-?	NR	6E-17		0.0445109	[0.034-0.055] unit decrease	Affymetrix [20259828] (imputed)	N
2131	chr2	202764208	202764209	rs7576585	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs7576585-?	NR	8E-17		0.0382176	[0.029-0.048] unit increase	Affymetrix [20259828] (imputed)	N
2132	chr2	202775054	202775055	rs10931978	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q33.1	CDK15	rs10931978-C	NR	2E-9		0.0177518	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
2132	chr2	202779949	202779950	rs11679645	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs11679645-?	NR	4E-35		0.0300454	[0.025-0.035] unit increase	Affymetrix [20259828] (imputed)	N
2132	chr2	202779949	202779950	rs11679645	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	CDK15	rs11679645-T	0.751475	2E-9	(women)	0.0325588	[0.022-0.043] unit increase	NR [17166351] (imputed)	N
2132	chr2	202779949	202779950	rs11679645	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	CDK15	rs11679645-T	0.750943	4E-13		0.0293398	[0.022-0.037] unit increase	NR [17166351] (imputed)	N
2132	chr2	202793519	202793520	rs7573217	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	CDK15	rs7573217-G	0.90596	2E-21		0.0301518	[0.024-0.036] unit increase	NR [13737936] (imputed)	N
2132	chr2	202796960	202796961	rs7587550	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.1	FZD7	rs7587550-?	NR	1E-7	(LPC 22:6)	0.3696597	[0.23-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2132	chr2	202799603	202799604	rs2350085	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q33.1	FZD7	rs2350085-T	0.8726	4E-14		0.0643	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
2132	chr2	202803880	202803881	rs6716216	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	CDK15	rs6716216-A	0.87834	6E-16		0.0229809	[0.017-0.029] unit decrease	NR [13737936] (imputed)	N
2132	chr2	202803880	202803881	rs6716216	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs6716216-?	NR	5E-35		0.037101	[0.031-0.043] unit decrease	Affymetrix [20259828] (imputed)	N
2132	chr2	202803880	202803881	rs6716216	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q33.1	NR	rs6716216-A	0.8809	5E-12	(European)	0.0658	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
2132	chr2	202807195	202807196	rs17385675	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	2q33.1	intergenic	rs17385675-?	0.069	3E-6	(clozapine-triglycerides)			Affymetrix [492900]	N
2132	chr2	202832093	202832094	rs16838527	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	FZD7	rs16838527-C	0.91417	7E-16		0.0268712	[0.02-0.033] unit increase	NR [13737936] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	FZD7	rs10931982-T	0.22546	3E-143		0.0568915	[0.053-0.061] unit decrease	NR [13737936] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs10931982-?	NR	2E-137				NR [~ 8900000] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs10931982-?	NR	2E-129		0.0584752	[0.054-0.063] unit decrease	Affymetrix [20259828] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	FZD7	rs10931982-T	0.227017	1E-20	(men)	0.0537576	[0.042-0.066] unit decrease	NR [17166351] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	FZD7	rs10931982-T	0.226733	8E-47		0.0548209	[0.047-0.063] unit decrease	NR [17166351] (imputed)	N
2132	chr2	202832129	202832130	rs10931982	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	FZD7	rs10931982-T	0.226485	1E-25	(women)	0.0570122	[0.046-0.068] unit decrease	NR [17166351] (imputed)	N
2132	chr2	202838873	202838874	rs2882325	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q33.1	FZD7	rs2882325-?	NR	5E-12		1.0559661	NR	Affymetrix [9154080] (imputed)	N
2132	chr2	202839970	202839971	rs12693954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q33.1		rs12693954-?	NR	3E-19				NR [~ 8900000] (imputed)	N
2132	chr2	202843874	202843875	rs62193862	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q33.1	NR	rs62193862-A	0.0999	7E-11		0.0119847	[0.0084-0.0156] unit increase	NR [9732723] (imputed)	N
2132	chr2	202843874	202843875	rs62193862	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q33.1	NR	rs62193862-A	0.0999	2E-8		0.023846285	[0.016-0.032] unit increase	NR [~ 10000000] (imputed)	N
2132	chr2	202848661	202848662	rs56368231	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	2q33.1	FZD7	rs56368231-A	0.1146	2E-8		0.022729428	[0.015-0.031] unit increase	Affymetrix [~ 11515000] (imputed)	N
2132	chr2	202856405	202856406	rs11685304	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	2q33.1		rs11685304-T	0.2525	5E-6		1.404	[1.214-1.623]	Affymetrix [7975321] (imputed)	N
2132	chr2	202859616	202859617	rs6754521	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2q33.1	intergenic	rs6754521-?	NR	5E-6	(SF10)			Affymetrix [5476100] (imputed)	N
2132	chr2	202867730	202867731	rs13394795	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q33.1		rs13394795-T	0.758	2E-13		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
2132	chr2	202869199	202869199	rs76253389	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q33.1	FZD7	rs76253389-A	0.759317	3E-8		0.0134676	[0.0087-0.0182] unit decrease	NR [16516521] (imputed)	N
2132	chr2	202875551	202875552	rs12185569	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q33.1	NR	rs12185569-A	0.249	4E-8		0.00838359	[0.0054-0.0114] unit decrease	NR [~ 9732723] (imputed)	N
2132	chr2	202880229	202880230	rs4675248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs4675248-A	0.3995	5E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2132	chr2	202880229	202880230	rs4675248	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q33.1	NR	rs4675248-A	0.4013	4E-8		0.01240749	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2132	chr2	202885505	202885506	rs12623702	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	2q33.1		rs12623702-A	0.613	8E-12		0.014	[0.01-0.018] unit decrease	Affymetrix [up to 90000000] (imputed)	N
2132	chr2	202885505	202885506	rs12623702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.1		rs12623702-A	0.6171	3E-11	(conditional-joint)	0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2132	chr2	202885505	202885506	rs12623702	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.1	Intergenic	rs12623702-A	0.6171	1E-11	(MTAG)	0.0091	[0.0066-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2133	chr2	202903664	202903665	rs35595052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q33.1		rs35595052-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2133	chr2	202918231	202918232	rs72936629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q33.1		rs72936629-?	NR	1E-19				NR [~ 8900000] (imputed)	N
2133	chr2	202930970	202930971	rs72936662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs72936662-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2133	chr2	202949850	202949851	rs1521882	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	2q33.1	FLJ39061, FZD7	rs1521882-A	0.82	8E-6				Perlegen [378332]	N
2133	chr2	202952128	202952129	rs11678462	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q33.1	NR	rs11678462-C	0.193645	8E-30		0.0437362	[0.036-0.051] unit increase	NR [19129689] (imputed)	N
2133	chr2	202958207	202958208	rs949782	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.1	KIAA2012	rs949782-C	0.699418	2E-34		0.0245784	[0.021-0.029] unit decrease	NR [13737936] (imputed)	N
2133	chr2	202958207	202958208	rs949782	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs949782-?	NR	3E-38				NR [~ 8900000] (imputed)	N
2133	chr2	202958207	202958208	rs949782	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs949782-?	NR	5E-37		0.0278403	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
2133	chr2	202959761	202959762	rs62195575	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.1		rs62195575-?	NR	1E-36		0.0276524	[0.023-0.032] unit decrease	Affymetrix [20259828] (imputed)	N
2133	chr2	202959761	202959762	rs62195575	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	KIAA2012	rs62195575-A	0.701717	3E-13		0.0260439	[0.019-0.033] unit decrease	NR [17166351] (imputed)	N
2133	chr2	202959761	202959762	rs62195575	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.1	KIAA2012	rs62195575-A	0.701628	2E-11	(women)	0.0324518	[0.023-0.042] unit decrease	NR [17166351] (imputed)	N
2133	chr2	202960846	202960847	rs13419481	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q33.1	NR	rs13419481-A	NR	4E-18		0.0209	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q33.1		rs12997625-T	0.53	2E-7		0.01	mmol/L increase	NR [NR] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q33.1		rs12997625-T	0.53	1E-12				NR [NR] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q33.1		rs12997625-T	0.53	7E-12		0.01	% increase	NR [NR] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	2q33.1		rs12997625-T	0.53	9E-6		0.009	U/L increase	NR [NR] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	2q33.1		rs12997625-T	0.53	4E-6		0.01	U/L increase	NR [NR] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	KIAA2012	rs12997625-T	0.5284	9E-13		0.0169	[0.012-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
2133	chr2	202970249	202970250	rs12997625	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q33.1	KIAA2012	rs12997625-T	0.5284	6E-7		0.0117	[0.0072-0.0162] unit decrease	Affymetrix [19819130] (imputed)	N
2133	chr2	202979369	202979369	rs141356250	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.1	KIAA2012	rs141356250-G	0.4718	9E-20		0.0171	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
2133	chr2	202980252	202980253	rs2882485	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q33.1	NR	rs2882485-A	0.469078	1E-9		0.0125357	[0.0085-0.0166] unit decrease	NR [NR]	N
2133	chr2	202980252	202980253	rs2882485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q33.1		rs2882485-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2133	chr2	203026029	203026030	rs1105935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q33.1		rs1105935-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2133	chr2	203028128	203028129	rs3856505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.1	NR	rs3856505-G	0.815302	1E-10				Affymetrix, Illumina [20825802] (imputed)	N
2134	chr2	203090592	203090593	rs6755690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.1		rs6755690-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2134	chr2	203099362	203099363	rs11694650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q33.1		rs11694650-G	NR	1E-8		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2134	chr2	203135806	203135806	rs199511240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q33.1		rs199511240-CA	NR	3E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2134	chr2	203136872	203136872	rs570916461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q33.1		rs570916461-AT	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
2134	chr2	203152766	203152767	rs74454549	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q33.1	SNORD11B	rs74454549-G	0.887519	3E-14		0.00275596	[0.002-0.0035] unit decrease	Affymetrix [13995440] (imputed)	N
2135	chr2	203163748	203163749	rs4470328	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.1		rs4470328-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2135	chr2	203164582	203164583	rs73990245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q33.1		rs73990245-C	NR	2E-8		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
2135	chr2	203164582	203164583	rs73990245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q33.1	NR	rs73990245-C	NR	3E-9		0.0194	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203173496	203173497	rs16839065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q33.1	NR	rs16839065-T	NR	6E-16		0.0299	[0.023-0.037] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203173496	203173497	rs16839065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q33.1	NR	rs16839065-T	NR	2E-14		0.0283	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203173496	203173497	rs16839065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q33.1	NR	rs16839065-T	NR	1E-9		0.0223	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203173496	203173497	rs16839065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q33.1	NR	rs16839065-T	NR	2E-16		0.0304	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203173496	203173497	rs16839065	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q33.1	NR	rs16839065-T	NR	4E-19		0.0331	[0.026-0.04] unit increase	Affymetrix [9000000] (imputed)	N
2135	chr2	203178637	203178638	rs13398233	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q33.1	NR	rs13398233-T	0.246822	1E-11		0.015134	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2135	chr2	203199218	203199219	rs112753638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q33.1		rs112753638-?	NR	4E-13				NR [~ 8900000] (imputed)	N
2135	chr2	203223294	203223295	rs6715945	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q33.1		rs6715945-A	0.797	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
2135	chr2	203235138	203235139	rs6714523	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q33.1	NR	rs6714523-G	0.8807	6E-11		0.0401	[0.028-0.052] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2135	chr2	203255484	203255485	rs13426118	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q33.1	NR	rs13426118-A	0.88	9E-20		0.0253	[0.02-0.031] unit decrease	NR [NR]	N
2135	chr2	203259087	203259087	rs201837932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q33.1		rs201837932-GTAA	NR	8E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2135	chr2	203271266	203271267	rs6435149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q33.1		rs6435149-C	NR	4E-8		0.014	[0.0091-0.0189] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2135	chr2	203271266	203271267	rs6435149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q33.1		rs6435149-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2136	chr2	203328932	203328933	rs2350809	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q33.1	NR	rs2350809-T	NR	8E-9		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2136	chr2	203328932	203328933	rs2350809	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q33.1	NR	rs2350809-T	0.879	4E-8	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2136	chr2	203328932	203328933	rs2350809	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q33.1	NR	rs2350809-T	NR	3E-7		0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2136	chr2	203328932	203328933	rs2350809	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q33.1	NR	rs2350809-T	0.879	3E-7	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2136	chr2	203330980	203330981	rs67714233	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.1		rs67714233-?	NR	2E-22				NR [~ 8900000] (imputed)	N
2136	chr2	203337000	203337001	rs12468226	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	2q33.1	BMPR2	rs12468226-A	0.88	3E-6	(network)	0.039	[0.023-0.055] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
2136	chr2	203338244	203338245	rs12477602	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q33.1	BMPR2	rs12477602-A	NR	2E-8		0.024411509	[0.016-0.033] unit decrease	Affymetrix [NR]	N
2136	chr2	203373029	203373030	rs2103208	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q33.2	BMPR2	rs2103208-G	0.4938	5E-8		0.3628	[0.23-0.49] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2136	chr2	203392478	203392479	rs57267144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q33.2	BMPR2	rs57267144-C	0.264493	7E-9		0.014567517	[0.0096-0.0195] unit increase	Affymetrix [93095623] (imputed)	N
2136	chr2	203412512	203412513	rs146787580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q33.2		rs146787580-C	NR	3E-16		0.0264	[0.02-0.033] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2136	chr2	203418536	203418537	rs1991371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	2q33.2		rs1991371-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2137	chr2	203431803	203431804	rs3731696	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q33.2	BMPR2	rs3731696-A	0.878814	6E-13		0.0218418	[0.016-0.028] unit decrease	Affymetrix [NR] (imputed)	N
2137	chr2	203431803	203431804	rs3731696	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q33.2	BMPR2	rs3731696-?	NR	5E-10		0.0249	[0.018-0.032] unit increase	Affymetrix [5701386] (imputed)	N
2137	chr2	203437053	203437054	rs78014510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q33.2	BMPR2	rs78014510-G	0.24928	8E-13		0.018646583	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2137	chr2	203437053	203437054	rs78014510	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q33.2	BMPR2	rs78014510-G	0.249235	4E-13		0.018810892	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2137	chr2	203437820	203437820	rs770611109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q33.2		rs770611109-GAAAA	0.237426	3E-11		0.0169592	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2137	chr2	203437820	203437820	rs770611109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q33.2	NR	rs770611109-I	0.236884	3E-11		0.01677	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2137	chr2	203446225	203446226	rs13018022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q33.2		rs13018022-C	NR	2E-10		0.0219	[0.015-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2137	chr2	203447874	203447875	rs148566631	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2q33.2	BMPR2	rs148566631-A	0.118597	2E-8		0.0488582	[0.032-0.066] unit increase	Affymetrix [7288503] (imputed)	N
2137	chr2	203450679	203450680	rs12463719	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q33.2	NR	rs12463719-G	0.7183	6E-10		0.0319	[0.022-0.042] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2137	chr2	203457726	203457727	rs78203474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q33.2	NR	rs78203474-C	NR	2E-11		0.0324	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
2137	chr2	203467469	203467470	rs77762937	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs77762937-T	0.49113	2E-9		0.1733	[0.12-0.23] unit increase	Illumina [17914520] (imputed)	N
2137	chr2	203477867	203477868	rs72926946	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q33.2	FAM117B	rs72926946-C	0.703621	2E-23		0.0207168	[0.017-0.025] unit increase	Affymetrix [NR] (imputed)	N
2137	chr2	203477867	203477868	rs72926946	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q33.2	FAM117B	rs72926946-C	0.703539	5E-13		0.015461	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
2137	chr2	203477867	203477868	rs72926946	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q33.2	intergenic	rs72926946-A	0.2784	6E-14		0.0228	[0.017-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2137	chr2	203485085	203485086	rs72926952	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	FSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs72926952-T	0.49906	2E-33		0.3426	[0.29-0.4] unit increase	Illumina [17926605] (imputed)	N
2137	chr2	203488593	203488594	rs12472790	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q33.2	AC009960.3	rs12472790-A	0.497427	7E-12		0.015343836	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2137	chr2	203489456	203489457	rs182472492	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q33.2	intergenic	rs182472492-A	0.7247	6E-19		0.0276	[0.022-0.034] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2137	chr2	203491225	203491226	rs190303734	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q33.2		rs190303734-T	0.295402	7E-17		0.020174302	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2137	chr2	203495057	203495058	rs113867238	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q33.2	FAM117B	rs113867238-A	0.295627	5E-12		0.01678557	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2137	chr2	203497785	203497786	rs7581601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q33.2		rs7581601-C	NR	1E-13		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2137	chr2	203499719	203499720	rs933969	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	2q33.2		rs933969-G	0.405971	4E-8		0.0231636	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2137	chr2	203519263	203519264	rs72926986	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q33.2	FAM117B	rs72926986-T	0.278	2E-27		0.0326	[0.027-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2137	chr2	203519782	203519783	rs6435161	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2q33.2	FAM117B	rs6435161-T	0.69	8E-10	(Trans-ethnic initial)	0.0243	[0.017-0.032] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2137	chr2	203523041	203523042	rs55866932	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.2		rs55866932-G	0.22	6E-14		7.52	z score increase	Affymetrix [9061022] (imputed)	N
2137	chr2	203527978	203527979	rs7569317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q33.2		rs7569317-C	NR	2E-16		0.0178	[0.013-0.022] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
2137	chr2	203527978	203527979	rs7569317	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q33.2	FAM117B	rs7569317-T	0.469367	9E-18		0.0178952	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
2137	chr2	203527978	203527979	rs7569317	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q33.2	FAM117B	rs7569317-T	0.469379	2E-18		0.0181103	[0.014-0.022] unit decrease	Affymetrix [NR] (imputed)	N
2137	chr2	203532303	203532304	rs11694172	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q33.2	FAM117B	rs11694172-G	0.25	2E-9		0.028	[NR] unit increase	NR [NR] (imputed)	N
2137	chr2	203545126	203545127	rs113138131	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on myeloid Dendritic Cell	2,872 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs113138131-T	0.49547	2E-21		0.2775	[0.22-0.33] unit increase	Illumina [17926605] (imputed)	N
2137	chr2	203554323	203554324	rs72928925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Sarcoidosis	1,718 European ancestry cases, 484,955 European ancestry controls, 220 East Asian ancestry cases, 177,667 East Asian ancestry controls	NA	2q33.2		rs72928925-C	NR	8E-9		0.2519	[0.17-0.34] unit increase	Affymetrix, Illumina [25845061] (imputed)	N
2138	chr2	203556224	203556225	rs35033554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q33.2		rs35033554-T	NR	5E-23		0.0231	[0.019-0.028] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
2138	chr2	203556525	203556526	rs6748088	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	2q33.2	FAM117B	rs6748088-C	0.31	2E-8	(EA)	1.18	[1.11-1.25]	Illumina [128705]	N
2138	chr2	203610939	203610940	rs11676950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2q33.2		rs11676950-C	NR	2E-9		0.0346	[0.023-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2138	chr2	203630561	203630562	rs114146579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q33.2	NR	rs114146579-T	NR	4E-9		0.0315	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
2138	chr2	203631358	203631359	rs11680951	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q33.2		rs11680951-G	0.45	1E-16		8.3	z score increase	Affymetrix [9061022] (imputed)	N
2138	chr2	203637872	203637873	rs7597959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs7597959-A	0.416489	4E-17				Affymetrix, Illumina [17210439] (imputed)	N
2138	chr2	203641882	203641883	rs139820087	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	2q33.2	ICA1L	rs139820087-?	NA	6E-6		1.242	[0.7-1.78] unit decrease	Illumina [6690240] (imputed)	N
2138	chr2	203642154	203642155	rs62194158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q33.2	ICA1L	rs62194158-A	0.453357	2E-16		0.018659862	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2138	chr2	203647135	203647136	rs112440397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q33.2	ICA1L	rs112440397-T	0.584763	3E-14		0.017371407	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2138	chr2	203647275	203647276	rs11675462	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs11675462-?		2E-8	(External capsule )			NR [8955960] (imputed)	N
2138	chr2	203647275	203647276	rs11675462	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs11675462-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
2138	chr2	203647275	203647276	rs11675462	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs11675462-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
2138	chr2	203649500	203649501	rs72932727	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	2q33.2	ICA1L	rs72932727-G	0.66	2E-8		1.1111112	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
2138	chr2	203650266	203650267	rs72932729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q33.2		rs72932729-T	NR	3E-21		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2138	chr2	203650266	203650267	rs72932729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q33.2	NR	rs72932729-T	0.480651	1E-18		0.016275	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2138	chr2	203652837	203652838	rs6733972	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.2	NR	rs6733972-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
2138	chr2	203652837	203652838	rs6733972	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q33.2	ABI2	rs6733972-C	0.479799246943271	2E-6		0.0025801	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
2138	chr2	203664928	203664929	rs76122535	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	2q33.2	ICA1L, WDR12, CARF, NBEAL1	rs76122535-G	0.134355	6E-9		0.360912	[0.24-0.48] unit increase	Affymetrix [NR] (imputed)	N
2138	chr2	203673072	203673073	rs74675536	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs74675536-?		5E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2138	chr2	203673072	203673073	rs74675536	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs74675536-?		2E-11	(External capsule )			NR [8955960] (imputed)	N
2138	chr2	203676104	203676105	rs115400054	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	2q33.2	FAM117B	rs115400054-C	0.88	5E-9		0.054	[0.036-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2139	chr2	203688034	203688035	rs62194667	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q33.2	NR	rs62194667-C	0.391605	7E-19		0.017472	[0.014-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2139	chr2	203693276	203693277	rs78488377	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q33.2	NR	rs78488377-A	0.046	7E-6		0.041193374	[0.023-0.059] unit decrease	Affymetrix [up to 6544775] (imputed)	N
2139	chr2	203695264	203695265	rs17594321	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.2		rs17594321-?	NR	1E-10		0.0132033	[0.0091-0.0173] unit increase	Affymetrix [20259828] (imputed)	N
2139	chr2	203708306	203708307	rs934287	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	2q33.2	NR	rs934287-?	NR	1E-13				NR [up to 7000000]	N
2139	chr2	203710273	203710274	rs2004930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs2004930-T	0.415609	6E-20				Affymetrix, Illumina [24588908] (imputed)	N
2139	chr2	203710349	203710349	rs576818999	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs576818999-?		4E-9	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2139	chr2	203710349	203710349	rs576818999	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs576818999-?		3E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2139	chr2	203710349	203710349	rs576818999	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs576818999-?		6E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
2139	chr2	203710349	203710349	rs576818999	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs576818999-?		1E-11	(Anterior corona radiata)			NR [8955960] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q33.2	ICA1L	rs10207567-C	0.814	2E-12	(EA)	0.018	[0.012-0.024] unit increase	NR [12082474] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2q33.2	ICA1L	rs10207567-C	NR	3E-14		0.0191	[0.014-0.024] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2q33.2	ICA1L	rs10207567-C	0.8151	3E-14		0.0193712	[0.014-0.024] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	2q33.2	ICA1L	rs10207567-C	NR	4E-6		1.0399785	[1.02-1.06]	Affymetrix, Illumina [8326000] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q33.2	NR	rs10207567-C	0.822	1E-10		0.00909889	[0.0063-0.0119] unit increase	NR [9732723] (imputed)	N
2139	chr2	203714972	203714973	rs10207567	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2q33.2	ICA1L	rs10207567-C	0.813	1E-11		0.01455	[0.01-0.019] unit increase	Affymetrix [11709857] (imputed)	N
2139	chr2	203723049	203723050	rs183979857	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.2		rs183979857-?	NR	3E-6		0.0796578	[0.049-0.111] unit decrease	Affymetrix [20259828] (imputed)	N
2139	chr2	203723049	203723050	rs183979857	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.2	ICA1L	rs183979857-T	0.991867	6E-11		0.191757	[0.14-0.25] unit decrease	NR [17166351] (imputed)	N
2139	chr2	203723049	203723050	rs183979857	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q33.2	ICA1L	rs183979857-T	0.991864	5E-6	(women)	0.176037	[0.099-0.253] unit decrease	NR [17166351] (imputed)	N
2139	chr2	203723988	203723989	rs4673238	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs4673238-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		2E-12	(External capsule )			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		1E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		7E-10	(Average across all tracts)			NR [8955960] (imputed)	N
2139	chr2	203728983	203728984	rs186399184	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs186399184-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
2139	chr2	203745884	203745885	rs6725887	33321069	van Zuydam NR	2020-08-13	Circ Genom Precis Med	Genetic Predisposition to Coronary Artery Disease in Type 2 Diabetes Mellitus.	Coronary artery disease	19,245 European ancestry cases, 8,463 South Asian ancestry cases, 30,581 European ancestry controls, 8,354 South Asian ancestry controls	16,704 European ancestry cases, 101,083 European ancestry controls	2q33.2	NR	rs6725887-C	0.15	6E-8		1.15	[1.09-1.20]	Affymetrix, Illumina [at least 119674] (imputed)	N
2139	chr2	203745884	203745885	rs6725887	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	2q33.2	WDR12	rs6725887-C	NR	2E-8		1.14	[1.10-1.19]	Illumina [575000] (imputed)	N
2139	chr2	203745884	203745885	rs6725887	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	2q33.2	WDR12	rs6725887-C	0.15	1E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2139	chr2	203745884	203745885	rs6725887	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	2q33.2	WDR12	rs6725887-C	0.14	1E-8		1.17	[1.11-1.23]	Affymetrix [~ 2500000] (imputed)	N
2139	chr2	203753015	203753016	rs6435169	33910581	Zhuang Z	2021-04-29	BMC Med	Shared genetic etiology and causality between body fat percentage and cardiovascular diseases: a large-scale genome-wide cross-trait analysis.	Body fat percentage or coronary artery disease (MTAG)	89,297 European ancestry individuals with body fat percentage, 11,419 Korean ancestry, Indian ancestry, Jamaican ancestry individuals with body fat percentage, 61,289 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic cases with coronary artery disease, 134,524 European ancestry, East Asian ancestry, South Asian ancestry, African American, Hispanic controls without coronary artery disease	NA	2q33.2		rs6435169-?	NR	7E-10		0.1334	[0.1-0.16] unit decrease	NR [NR] (imputed)	N
2139	chr2	203753071	203753072	rs7582720	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or large artery stroke	2,167 Large artery stroke cases, 22,233 Coronary artery disease cases, ~ 75,921 controls	NA	2q33.2	WDR12	rs7582720-?		3E-8				Affymetrix, Illumina [up to 2500000] (imputed)	N
2139	chr2	203753071	203753072	rs7582720	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease or ischemic stroke	12,389 Ischemic stroke cases, 22,233 Coronary artery disease cases, ~ 88,766 controls	NA	2q33.2	WDR12	rs7582720-?		4E-9				Affymetrix, Illumina [up to 2500000] (imputed)	N
2139	chr2	203755742	203755743	rs72934760	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q33.2	intergenic	rs72934760-A	0.1477	2E-9		0.054	[0.036-0.072] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2139	chr2	203765755	203765756	rs35212307	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	2q33.2	WDR12	rs35212307-C	0.11	4E-8				Illumina [Exome array]	N
2139	chr2	203777225	203777226	rs149163995	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	2q33.2	ALS2CR8	rs149163995-?	NR	4E-10		1.0822511	[1.05-1.11]	Illumina [13763073] (imputed)	N
2139	chr2	203780514	203780515	rs7603972	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	2q33.2	CARF1	rs7603972-A	NR	2E-13		0.07	[0.051-0.089] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2139	chr2	203780885	203780889	rs151050381	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs151050381-?		4E-8	(External capsule )			NR [8955960] (imputed)	N
2139	chr2	203788949	203788950	rs72936869	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	2q33.2	ALS2CR8	rs72936869-?	NR	1E-7		1.1111112	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
2139	chr2	203796813	203796814	rs72926767	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q33.2	CARF	rs72926767-G	0.11543	1E-21		1.12	[1.09-1.14]	NR [8126035] (imputed)	N
2139	chr2	203804288	203804289	rs72926772	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2q33.2	CARF	rs72926772-T	0.1	5E-18		1.13	[1.11-1.15]	Illumina [5167567] (imputed)	N
2139	chr2	203808531	203808532	rs140244541	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q33.2	CARF	rs140244541-?	NR	5E-27		0.0805827	[0.066-0.095] unit increase	Illumina [4804024] (imputed)	N
2139	chr2	203808531	203808532	rs140244541	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs140244541-?		9E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
2139	chr2	203808531	203808532	rs140244541	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	2q33.2	FAM117B	rs140244541-G	0.86	6E-9		0.05	[0.032-0.068] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2140	chr2	203825488	203825489	rs533898616	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs533898616-?		2E-9	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2140	chr2	203829582	203829582	rs150289443	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	2q33.2	CARF	rs150289443-TTA	0.115856	2E-10		1.11	[1.08-1.15]	NR [10903881] (imputed)	N
2140	chr2	203829582	203829582	rs150289443	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs150289443-?		4E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
2140	chr2	203829582	203829582	rs150289443	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs150289443-?		3E-8	(Average across all tracts)			NR [8955960] (imputed)	N
2140	chr2	203829582	203829582	rs150289443	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs150289443-?		1E-13	(Anterior corona radiata)			NR [8955960] (imputed)	N
2140	chr2	203831211	203831212	rs114123510	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2q33.2	WDR12	rs114123510-A	0.116	3E-19		1.13	[1.10-1.15]	Affymetrix [9149595] (imputed)	N
2140	chr2	203832119	203832120	rs72928605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q33.2	FAM117B, ICA1L, WDR12, CARF, NBEAL1, CYP20A1, ABI2	rs72928605-?		1E-8				NR [7428630] (imputed)	N
2140	chr2	203832866	203832867	rs138556413	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	2q33.2	CARF	rs138556413-?	0.97	2E-8		1.1363636	[1.09-1.19]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
2140	chr2	203833017	203833018	rs149268645	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q33.2	NR	rs149268645-G	0.85	4E-7		1.1764705	[1.11-1.25]	NR [at least 8482392] (imputed)	N
2140	chr2	203833017	203833018	rs149268645	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	2q33.2	NR	rs149268645-G	0.85	4E-7		1.1764705	[1.11-1.25]	NR [at least 8482392] (imputed)	N
2140	chr2	203845340	203845341	rs370248933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs370248933-?		4E-11	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2140	chr2	203845340	203845341	rs370248933	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs370248933-?		4E-10	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2140	chr2	203846816	203846817	rs72932557	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	2q33.2	CARF	rs72932557-T	0.11	4E-8				Illumina [Exome array]	N
2140	chr2	203854377	203854378	rs140376153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.2	NR	rs140376153-A	0.0122	6E-9	(AKR1C2)	1.021	NR unit increase	Illumina [1671387] (imputed)	N
2140	chr2	203854377	203854378	rs140376153	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.2	NR	rs140376153-A	0.0122	2E-8	(AKR1B10)	2.006	NR unit increase	Illumina [1671387] (imputed)	N
2140	chr2	203873742	203873743	rs6728861	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q33.2	NBEAL1	rs6728861-A	0.1174	1E-32		0.1054	[0.088-0.123] unit increase	Affymetrix [at least 7947838] (imputed)	N
2140	chr2	203877365	203877365	rs530464314	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs530464314-?		2E-11	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2140	chr2	203877365	203877365	rs530464314	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs530464314-?		1E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2140	chr2	203880833	203880834	rs4675310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	2q33.2		rs4675310-A	NR	4E-9		0.085	[0.057-0.113] unit decrease	Affymetrix, Illumina [25842036] (imputed)	N
2140	chr2	203880991	203880992	rs2351524	30002152	Jian X	2018-08-01	Stroke	Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.	White matter hyperintensities	7, 790 European ancestry individuals, 2,929 African American individuals	1,192 European ancestry individuals	2q33.2	NBEAL1	rs2351524-T	0.115	6E-9				Illumina [Exome array]	N
2140	chr2	203892766	203892767	rs145538381	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	2q33.2	NBEAL1	rs145538381-?	NR	2E-7		1.1111112	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
2140	chr2	203893998	203893999	rs115654617	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q33.2	NBEAL1	rs115654617-A	0.1157	2E-32		0.1179	[0.098-0.137] unit increase	NR [8041861] (imputed)	N
2140	chr2	203904304	203904305	rs181256816	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q33.2		rs181256816-C	0.13	7E-19		8.87	z score increase	Affymetrix [9061022] (imputed)	N
2140	chr2	203904304	203904305	rs181256816	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q33.2	NR	rs181256816-C	0.1222	8E-15				NR [9056863] (imputed)	N
2140	chr2	203904305	203904306	rs185726277	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q33.2	NR	rs185726277-A	0.1222	1E-17				NR [9056863] (imputed)	N
2140	chr2	203911271	203911272	rs78377252	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	2q33.2	NBEAL1	rs78377252-?	NA	2E-6		1.183	[0.69-1.67] unit decrease	Illumina [6690240] (imputed)	N
2140	chr2	203916486	203916487	rs72934505	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	2q33.2	ICA1L, WDR12, CARF, NBEAL1, CYP20A1	rs72934505-?		7E-8				Affymetrix [NR] (imputed)	N
2140	chr2	203916486	203916487	rs72934505	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	2q33.2	ICA1L, WDR12, CARF, NBEAL1, CYP20A1	rs72934505-T		4E-13		6.793	[NR] Zscore increase	Affymetrix [9700000] (imputed)	N
2140	chr2	203916486	203916487	rs72934505	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2q33.2	NBEAL1	rs72934505-T	0.89	6E-8				Affymetrix, Illumina [14227402] (imputed)	N
2140	chr2	203916486	203916487	rs72934505	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	2q33.2	NBEAL1	rs72934505-T	0.89	5E-8	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
2141	chr2	203962145	203962146	rs17473735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q33.2		rs17473735-C	0.253023	1E-9		0.0230121	[0.016-0.03] unit increase	Illumina [13478928] (imputed)	N
2141	chr2	203964136	203964137	rs7574314	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q33.2	NA	rs7574314-T	0.6091	4E-12		0.012	[0.0087-0.0153] unit increase	NR [~ 27400000] (imputed)	N
2141	chr2	203968972	203968973	rs72934535	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	7,338 European, African American, South Asian and Hispanic ancestry cases, 225,258 European, African American, South Asian and Hispanic ancestry controls	NA	2q33.2	WDR12, ICA1L, CARF, NBEAL1	rs72934535-T	0.89	5E-8		1.22	[1.14-1.3]	Illumina [6922875] (imputed)	N
2141	chr2	203968972	203968973	rs72934535	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	6,030 European ancestry cases, 248,929 European ancestry controls	NA	2q33.2	ICA1L, WDR12, CARF, NBEAL1	rs72934535-T	0.89	4E-9		1.25	[1.17-1.33]	Illumina [6932927] (imputed)	N
2141	chr2	203968972	203968973	rs72934535	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	2q33.2	NBEAL1	rs72934535-C	0.108	7E-9				Affymetrix [28000000] (imputed)	N
2141	chr2	203968972	203968973	rs72934535	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q33.2	NBEAL1	rs72934535-T	0.9	2E-32		0.128	[0.11-0.15] unit decrease	Affymetrix [7947838] (imputed)	N
2141	chr2	203970282	203970283	rs10497870	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.2	NA	rs10497870-A	0.6092	2E-13		0.0121	[0.009-0.0152] unit increase	NR [~ 27400000] (imputed)	N
2141	chr2	203981364	203981364	rs397800574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q33.2		rs397800574-CAAA	NR	6E-12		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
2141	chr2	203998335	203998336	rs17408550	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q33.2	NBEAL1	rs17408550-G	0.4763	4E-13		0.1859	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
2141	chr2	204002727	204002728	rs10180704	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs10180704-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
2141	chr2	204003682	204003683	rs55675410	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q33.2	NBEAL1	rs55675410-T	0.0136406265153848	9E-6	(F_Sutterellaceae_HB)	1.31118	[0.73-1.89] unit decrease	Illumina [7711310] (imputed)	N
2141	chr2	204005071	204005072	rs72934573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q33.2		rs72934573-G	NR	7E-15		0.1351	[0.1-0.17] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
2141	chr2	204009056	204009057	rs72934583	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2q33.2	NBEAL1	rs72934583-T	0.8776	5E-12				Affymetrix, Illumina [9900000] (imputed)	N
2141	chr2	204009056	204009057	rs72934583	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	2q33.2	NBEAL1	rs72934583-T	NR	1E-12		0.0627	[0.045-0.08] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2141	chr2	204009056	204009057	rs72934583	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	2q33.2	NBEAL1	rs72934583-T	0.8757	7E-13		0.0627	[0.046-0.08] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2141	chr2	204009056	204009057	rs72934583	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q33.2	NBEAL1	rs72934583-T	0.874	1E-9		0.0529	[0.036-0.07] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2141	chr2	204017936	204017937	rs72934589	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	2q33.2	NBEAL1	rs72934589-?	NR	2E-7		1.1111112	[1.06-1.15]	Affymetrix, Illumina [39235000] (imputed)	N
2141	chr2	204020796	204020797	rs13426445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q33.2		rs13426445-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2141	chr2	204033850	204033851	rs4675317	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.2	NR	rs4675317-?	NR	4E-15				Affymetrix [NR]	N
2141	chr2	204034277	204034278	rs180767135	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	2q33.2	NBEAL1	rs180767135-?	NA	9E-6		1.157	[0.65-1.67] unit decrease	Illumina [6690240] (imputed)	N
2141	chr2	204036356	204036357	rs72936304	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Renin levels	21,758 European ancestry individuals	9,173 individuals	2q33.2		rs72936304-T	0.87	3E-10		0.0821	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2141	chr2	204048839	204048840	rs10932008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs10932008-A	0.830433	5E-10				Affymetrix, Illumina [24558453] (imputed)	N
2141	chr2	204048839	204048840	rs10932008	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs10932008-?		5E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2141	chr2	204048839	204048840	rs10932008	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs10932008-?		1E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2141	chr2	204062727	204062728	rs188186531	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (small-vessel)	5,386 European ancestry cases, 192,662 European ancestry controls, 5,096 East Asian ancestry cases, 28,195 East Asian ancestry controls, 314 South Asian ancestry cases, 6,707 South Asian ancestry controls, 694 African American cases, 15,146 African American controls, 134 Asian ancestry cases, 333 Asian ancestry controls, 86 Latin American cases, 692 Latin American controls	NA	2q33.2	ICA1L, WDR12	rs188186531-A	0.89	4E-7		1.21	[1.12-1.30]	NR [~ 8000000] (imputed)	N
2141	chr2	204077329	204077329	rs367786013	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q33.2	NR	rs367786013-D	0.212286	1E-11		0.018439	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2142	chr2	204081674	204081675	rs116219813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q33.2	NR	rs116219813-T	0.125617	1E-11		0.018803	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2142	chr2	204085634	204085635	rs12693982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q33.2		rs12693982-?	NR	5E-13				NR [~ 8900000] (imputed)	N
2142	chr2	204085634	204085635	rs12693982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.2		rs12693982-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2142	chr2	204089729	204089730	rs16839626	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	NBEAL1	rs16839626-A	0.0060	4E-7	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
2142	chr2	204089729	204089730	rs16839626	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	NBEAL1	rs16839626-A	0.0060	3E-6	(Weight change )	0.04	[NR] kg/y increase	Illumina [899892]	N
2142	chr2	204089729	204089730	rs16839626	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	NBEAL1	rs16839626-A	0.0060	2E-7	(Fat mass deposition )	0.05	[NR] kcal/d increase	Illumina [899892]	N
2142	chr2	204089729	204089730	rs16839626	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.2	NBEAL1	rs16839626-A	0.0060	2E-7	(Energy storage )	0.05	[NR] kcal/d increase	Illumina [899892]	N
2142	chr2	204091477	204091477	rs34564655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q33.2	NBEAL1	rs34564655-GT	0.537908	1E-12		0.016151564	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2142	chr2	204099221	204099222	rs2351774	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.2		rs2351774-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2142	chr2	204106163	204106164	rs62183874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q33.2		rs62183874-G	NR	7E-24		0.0209	[0.017-0.025] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q33.2	NR	rs72938315-G	NR	2E-15		0.027	[0.02-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q33.2	NR	rs72938315-G	NR	4E-19		0.0305	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q33.2	NR	rs72938315-G	NR	1E-13		0.0254	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q33.2	NR	rs72938315-G	NR	2E-14		0.0263	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.2	CYP20A1	rs72938315-C	0.8549	7E-15		0.0207	[0.015-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
2142	chr2	204121062	204121063	rs72938315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2q33.2		rs72938315-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2142	chr2	204121144	204121145	rs115600411	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs115600411-G	0.101306	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
2142	chr2	204121144	204121145	rs115600411	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	2q33.2	CYP20A1	rs115600411-C	0.8693	7E-8		0.048	[0.031-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2142	chr2	204121144	204121145	rs115600411	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	2q33.2	CYP20A1	rs115600411-?	NR	1E-6		1.098901	[1.05-1.14]	Affymetrix, Illumina [39235000] (imputed)	N
2142	chr2	204123831	204123832	rs56059523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q33.2		rs56059523-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2142	chr2	204154551	204154552	rs1048013	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q33.2	CYP20A1	rs1048013-C	0.444423	7E-30		0.00267427	[0.0022-0.0031] unit decrease	Affymetrix [13995440] (imputed)	N
2142	chr2	204154551	204154552	rs1048013	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q33.2	CYP20A1	rs1048013-T	0.55	5E-24		10.1	z-score increase	Affymetrix [4311822] (imputed)	N
2142	chr2	204154676	204154677	rs114407963	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q33.2	CYP20A1	rs114407963-A		8E-6	(EA)	0.269	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2142	chr2	204154676	204154677	rs114407963	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q33.2	CYP20A1	rs114407963-A		3E-9		0.234	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2142	chr2	204154676	204154677	rs114407963	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q33.2	CYP20A1	rs114407963-A		7E-6		0.162	unit increase	Affymetrix [at least 2696785] (imputed)	N
2142	chr2	204159152	204159153	rs13028366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q33.2		rs13028366-A	NR	7E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2142	chr2	204159152	204159153	rs13028366	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.2	NR	rs13028366-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
2142	chr2	204165170	204165171	rs11888559	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	2q33.2	CYP20A1	rs11888559-T	0.15	2E-6		1.05	[0.62-1.48] cm increase	Affymetrix [2073674] (imputed)	N
2142	chr2	204187221	204187222	rs181311498	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q33.2	ABI2	rs181311498-T	0.0024	8E-6		0.8592	[0.48-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2143	chr2	204226002	204226003	rs12474416	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs12474416-?		3E-8	(External capsule )			NR [8955960] (imputed)	N
2143	chr2	204242896	204242897	rs35071165	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs35071165-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
2143	chr2	204249398	204249399	rs11675251	21862451	Benyamin B	2011-08-23	Hum Mol Genet	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adult individuals	1,260 European ancestry adult individuals, 652 European ancestry adolescent individuals	2q33.2	ABI2	rs11675251-A	0.45	4E-18		0.15	[0.12-0.18] SD decrease	Illumina [2383238] (imputed)	N
2143	chr2	204252907	204252908	rs17194468	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2q33.2	FAM117B	rs17194468-T	0.115026	1E-8		5.74	z score increase	NR [10847151] (imputed)	N
2143	chr2	204272089	204272090	rs1376877	17903303	O'Donnell CJ	2007-09-19	BMC Med Genet	Genome-wide association study for subclinical atherosclerosis in major arterial territories in the NHLBI's Framingham Heart Study.	Subclinical atherosclerosis traits (other)	Up to 984 individuals	NA	2q33.2	ABI2	rs1376877-?	NR	4E-7	(ICA IMT)			Affymetrix [70897]	N
2143	chr2	204290036	204290037	rs78999781	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2q33.2	ABI2	rs78999781-T	NR	1E-9		0.0198	[0.013-0.026] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
2143	chr2	204298801	204298802	rs2264901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.2		rs2264901-?	NR	4E-15				NR [~ 8900000] (imputed)	N
2143	chr2	204299506	204299507	rs77589546	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q33.2	ABI2	rs77589546-G		7E-6	(EA)	2.34	[1.07-5.11]	Affymetrix, Illumina [NR] (imputed)	N
2143	chr2	204304213	204304214	rs2465520	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q33.2	NR	rs2465520-A	NR	4E-9		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2143	chr2	204309324	204309325	rs2246849	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	2q33.2	NR	rs2246849-G	NR	2E-6		0.009924	[0.0058-0.014] unit increase	Illumina [~ 540852]	N
2143	chr2	204317552	204317553	rs7603427	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q33.2	NR	rs7603427-C	0.466563	9E-8		0.011178	[0.0071-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
2143	chr2	204317552	204317553	rs7603427	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q33.2	RAPH1	rs7603427-C	0.466563	7E-11		0.0135798	[0.0095-0.0177] unit decrease	Affymetrix [NR] (imputed)	N
2144	chr2	204355522	204355523	rs62182788	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q33.2	RAPH1	rs62182788-C	0.593387	6E-9		0.013276845	[0.0088-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
2144	chr2	204357497	204357498	rs34762923	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q33.2		rs34762923-C	NR	2E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2144	chr2	204357497	204357498	rs34762923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q33.2	RAPH1	rs34762923-C	0.687616	8E-10		0.014882885	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2144	chr2	204357497	204357498	rs34762923	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q33.2	RAPH1	rs34762923-C	0.687622	4E-10		0.01516359	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2144	chr2	204367310	204367311	rs139644567	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs139644567-?		3E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2144	chr2	204375992	204375993	rs2469956	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	2q33.2	RAPH1	rs2469956-T	0.04	2E-7		0.63	[0.39-0.87] unit increase	Illumina [6379332] (imputed)	N
2144	chr2	204387481	204387482	rs62182810	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	2q33.2		rs62182810-A	0.5441	4E-9		1.0273678	[1.018146855-1.036672261]	Affymetrix, Illumina [NR] (imputed)	N
2144	chr2	204387481	204387482	rs62182810	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	2q33.2	NR	rs62182810-A	0.55	2E-9		1.03	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
2144	chr2	204402792	204402793	rs10176600	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q33.2	NR	rs10176600-?		1E-8	(Superior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2144	chr2	204421283	204421284	rs1174604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.2		rs1174604-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2144	chr2	204427339	204427340	rs10174652	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q33.2	NR	rs10174652-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
2144	chr2	204471472	204471473	rs4675354	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	2q33.2	RAPH1, CD28	rs4675354-?	NR	4E-6		1.21	[1.11-1.31]	Illumina [at least 5000000] (imputed)	N
2145	chr2	204496041	204496042	rs76908707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	2q33.2	NR	rs76908707-C	0.499345	2E-10		0.030923	[0.021-0.04] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
2145	chr2	204506190	204506191	rs57198362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	2q33.2		rs57198362-C	0.499355	2E-11		0.029829	[0.021-0.039] unit increase	Illumina [13471431] (imputed)	N
2145	chr2	204517032	204517033	rs71427711	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	2q33.2	NR	rs71427711-A	0.8437	8E-8	(Cuneus)	6.7964773	[4.32-9.27] unit decrease	Affymetrix, Illumina [NR]	N
2145	chr2	204530523	204530524	rs76295456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q33.2		rs76295456-A	NR	5E-14		0.0243	[0.018-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2145	chr2	204569999	204570000	rs1879877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q33.2	CD28	rs1879877-T	0.216052	1E-11		0.018210098	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2145	chr2	204576923	204576923	rs3835894	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	2q33.2		rs3835894-CA	0.486058363	3E-8		1.0938642	[1.059621574-1.129213346]	Illumina [8919992] (imputed)	N
2145	chr2	204579223	204579225	rs869239023	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs869239023-C	0.23993	1E-8		0.1928	[0.13-0.26] unit decrease	Illumina [17954496] (imputed)	N
2145	chr2	204579223	204579224	rs79896436	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs79896436-T	0.23556	4E-9		0.2023	[0.14-0.27] unit decrease	Illumina [17954496] (imputed)	N
2145	chr2	204580682	204580683	rs7590672	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs7590672-C	0.82443	2E-8		0.2157	[0.14-0.29] unit increase	Illumina [17954496] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q33.2		rs4675360-T	NR	3E-15		0.0254	[0.019-0.032] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q33.2	CD28	rs4675360-T	0.036859	3E-22		0.0567472	[0.045-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q33.2	CD28	rs4675360-T	0.036861	2E-19		0.052609336	[0.041-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	2q33.2	NR	rs4675360-A	0.513514	7E-10		0.029659	[0.02-0.039] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs4675360-T	0.10579	5E-26				Affymetrix, Illumina [19872809] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q33.2	NR	rs4675360-T	0.037206	8E-20		0.047611	[0.037-0.058] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2145	chr2	204584455	204584456	rs4675360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q33.2		rs4675360-?	NR	9E-20				NR [~ 8900000] (imputed)	N
2145	chr2	204585955	204585956	rs55730955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q33.2		rs55730955-A	NR	7E-14		0.081	[0.06-0.102] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
2145	chr2	204585955	204585956	rs55730955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q33.2		rs55730955-A	0.512931455	3E-11		0.09044191	[0.064-0.117] unit decrease	Illumina [13429513] (imputed)	N
2145	chr2	204585955	204585956	rs55730955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q33.2		rs55730955-?	NR	2E-7				NR [~ 8900000] (imputed)	N
2145	chr2	204589280	204589281	rs3116493	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs3116493-T	0.56385	8E-30		0.303	[0.25-0.35] unit increase	Illumina [17954496] (imputed)	N
2145	chr2	204589280	204589281	rs3116493	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ CD8+ T cell	2,914 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs3116493-T	0.56347	8E-13		0.1976	[0.14-0.25] unit increase	Illumina [17951426] (imputed)	N
2145	chr2	204589943	204589944	rs4675361	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	2q33.2	CD28	rs4675361-T	0.75	5E-6	(Right HG thickness)	0.0323	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
2145	chr2	204592020	204592021	rs3116494	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.2	ICOS, CD28, CTLA4	rs3116494-G	0.2539	1E-7	(EA)	1.080307	[1.05-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2145	chr2	204592020	204592021	rs3116494	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q33.2	ICOS, CD28, CTLA4	rs3116494-G	0.2539	5E-7	(EA)	1.0607666	[1.04-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2145	chr2	204596728	204596729	rs13390252	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD45RA- CD4 not regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs13390252-G	0.19897	6E-45		0.4805	[0.41-0.55] unit decrease	Illumina [17954496] (imputed)	N
2145	chr2	204600456	204600457	rs45620941	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2q33.2	CD28	rs45620941-?	NR	4E-8		0.1284	unit increase	Illumina [up to 143074]	N
2145	chr2	204602215	204602216	rs397897641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	2q33.2		rs397897641-G	0.500424	3E-8		0.0246088	[0.016-0.033] unit decrease	Illumina [13470073] (imputed)	N
2146	chr2	204605454	204605455	rs4675365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.2	NR	rs4675365-T	0.68634	9E-19				Affymetrix, Illumina [23472807] (imputed)	N
2146	chr2	204609401	204609402	rs62183989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62183989-T	0.19822	3E-34		0.4161	[0.35-0.48] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204609401	204609402	rs62183989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62183989-T	0.19822	1E-27		0.3589	[0.3-0.42] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204609401	204609402	rs62183989	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on activated & secreting CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62183989-T	0.19822	2E-34		0.4077	[0.34-0.47] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.2	CD28	rs1980422-T	NR	3E-12		0.115858	[0.084-0.148] unit decrease	Illumina [8380626] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.2	CD28	rs1980422-T	0.77	6E-11	(EA)	0.11592	[0.081-0.151] unit decrease	Illumina [8380626] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	2q33.2	CTLA4, CD28	rs1980422-?	NR	2E-17		1.14		Illumina [109572]	N
2146	chr2	204610395	204610396	rs1980422	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	CD28	rs1980422-C	0.24	2E-13	(EA)	1.13	[1.09-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	CD28	rs1980422-C	0.19	3E-14		1.12	[1.09-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CD28	rs1980422-G	0.18	3E-7		1.1376		Illumina [129464] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CD28, CTLA4	rs1980422-G	0.18	5E-6		1.1051		Illumina [129464] (imputed)	N
2146	chr2	204610395	204610396	rs1980422	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	2q33.2	CD28, CTLA4	rs1980422-?	0.233	1E-15		1.19		Illumina [139553]	N
2146	chr2	204611194	204611195	rs6435203	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2q33.2	CD28, CTLA4	rs6435203-A	0.73	1E-7		1.07	[1.04-1.10]	Illumina [161311]	N
2146	chr2	204612057	204612058	rs7426056	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	2q33.2	intergenic	rs7426056-A	0.231	1E-8		1.1135654		Illumina [252970]	N
2146	chr2	204612057	204612058	rs7426056	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q33.2	intergenic	rs7426056-A		2E-11		1.1509169		Illumina [252970]	N
2146	chr2	204612057	204612058	rs7426056	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q33.2	CD28	rs7426056-A	NA	7E-12				Illumina [252970]	N
2146	chr2	204612057	204612058	rs7426056	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	2q33.2	CD28	rs7426056-A	0.25	2E-16		1.25	[1.19-1.32]	Affymetrix, Illumina [7891602] (imputed)	N
2146	chr2	204612057	204612058	rs7426056	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q33.2	CD28	rs7426056-?	NR	1E-20	(subset analysis)			Illumina [130052]	N
2146	chr2	204612057	204612058	rs7426056	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	2q33.2	CD28	rs7426056-A	0.229	2E-20		1.3	[1.23-1.37]	Illumina [140322] (imputed)	N
2146	chr2	204623480	204623481	rs62184016	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62184016-C	0.19875	7E-52		0.5184	[0.45-0.58] unit decrease	Illumina [17954460] (imputed)	N
2146	chr2	204623480	204623481	rs62184016	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD45RA+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62184016-C	0.19869	6E-33		0.4171	[0.35-0.48] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204627499	204627500	rs56209416	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs56209416-C	0.1976	2E-27		0.3545	[0.29-0.42] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204628794	204628795	rs117701653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q33.2	KRT18P39, AC125238.1	rs117701653-C	0.045041	3E-9		0.032109857	[0.021-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
2146	chr2	204629967	204629991	rs144922376	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs144922376-G	0.80691	2E-8		0.2099	[0.14-0.28] unit increase	Illumina [17954496] (imputed)	N
2146	chr2	204631015	204631016	rs1973872	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs1973872-G	0.60103	3E-38		0.3661	[0.31-0.42] unit increase	Illumina [17954496] (imputed)	N
2146	chr2	204631015	204631016	rs1973872	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD4+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs1973872-G	0.60103	2E-42		0.3858	[0.33-0.44] unit increase	Illumina [17954496] (imputed)	N
2146	chr2	204631711	204631712	rs56216383	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD45RA- CD8+ T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs56216383-G	0.1976	1E-43		0.4779	[0.41-0.54] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204631737	204631738	rs4673265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q33.2	NR	rs4673265-T	0.730667	4E-13		0.015828	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2146	chr2	204632860	204632861	rs12614091	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q33.2	CD28	rs12614091-A	NR	6E-12		1.076	NR	Affymetrix, Illumina [8278136] (imputed)	N
2146	chr2	204633783	204633784	rs62184019	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD28+ CD4-CD8- T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs62184019-T	0.19728	2E-36		0.4347	[0.37-0.5] unit decrease	Illumina [17954441] (imputed)	N
2146	chr2	204636189	204636190	rs2558210	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2q33.2		rs2558210-A	NR	8E-12	(conditional on rs3087243)	0.082	[0.058-0.106] unit increase	NR [13810676] (imputed)	N
2146	chr2	204639763	204639764	rs4673268	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD45RA- CD4 not regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs4673268-A	0.19127	1E-8		0.2061	[0.14-0.28] unit decrease	Illumina [17954496] (imputed)	N
2146	chr2	204643193	204643194	rs4675369	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on resting CD4 regulatory T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs4675369-G	0.24752	2E-10		0.2142	[0.15-0.28] unit decrease	Illumina [17954460] (imputed)	N
2146	chr2	204643193	204643194	rs4675369	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	2q33.2	CD28, CTLA4, ICOS	rs4675369-G	0.448	1E-13		1.31	[1.22-1.41]	Illumina [776516]	N
2146	chr2	204646498	204646499	rs4675370	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q33.2		rs4675370-G	NR	8E-9		0.222072	[0.15-0.3] unit increase	NR [5275424] (imputed)	N
2146	chr2	204652263	204652264	rs10179483	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28 on CD39+ activated CD4 regulatory T cell	2,920 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q33.2		rs10179483-A	0.72138	5E-9		0.1881	[0.13-0.25] unit increase	Illumina [17954496] (imputed)	N
2146	chr2	204659235	204659236	rs189602139	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	2q33.2		rs189602139-A	NR	3E-8		3.6062026	NR	Affymetrix [7846216] (imputed)	N
2146	chr2	204660748	204660751	rs10581773	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	2q33.2		rs10581773-ATAT	NR	4E-13		0.214906	[0.16-0.27] unit increase	NR [2787054] (imputed)	N
2146	chr2	204660748	204660751	rs10581773	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	2q33.2		rs10581773-ATAT	NR	5E-7		0.21695	[0.13-0.3] unit increase	NR [5054572] (imputed)	N
2146	chr2	204664814	204664815	rs112165453	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q33.2	U6	rs112165453-T	0.0163088	3E-9		0.21498047	[0.14-0.29] unit increase	Affymetrix [7288503] (imputed)	N
2146	chr2	204683796	204683797	rs62184863	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2q33.2	CD28	rs62184863-?	NR	2E-8		0.204	unit increase	Illumina [up to 143074]	N
2146	chr2	204692195	204692197	rs144115812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q33.2		rs144115812-A	NR	8E-19		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2146	chr2	204692215	204692216	rs34636506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q33.2		rs34636506-G	NR	2E-14		0.1346	[0.1-0.17] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
2146	chr2	204693875	204693876	rs231735	19503088	Gregersen PK	2009-06-07	Nat Genet	REL, encoding a member of the NF-kappaB family of transcription factors, is a newly defined risk locus for rheumatoid arthritis.	Rheumatoid arthritis	2,418 European ancestry cases, 4,504 European ancestry controls	2,604 cases, 2,882 controls	2q33.2	CTLA4	rs231735-T	0.51	6E-9		1.17	[1.11-1.23]	Illumina [278502]	N
2146	chr2	204696981	204696982	rs231784	29178545	Gao C	2017-11-27	Obesity (Silver Spring)	Genome-Wide Study of Subcutaneous and Visceral Adipose Tissue Reveals Novel Sex-Specific Adiposity Loci in Mexican Americans.	Subcutaneous adipose tissue	580 Mexican American female individuals, 403 Mexican American male individuals.	NA	2q33.2	CTLA4, CD28	rs231784-?	NR	3E-7	(females)	2.357621	NR unit decrease	Illumina [7708309] (imputed)	N
2146	chr2	204699951	204699952	rs231789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q33.2		rs231789-T	NR	1E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2146	chr2	204702342	204702343	rs231793	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.2	CTLA4	rs231793-C	0.0524619	3E-10		0.0256095	[0.018-0.034] unit decrease	NR [13737936] (imputed)	N
2146	chr2	204707137	204707138	rs11571303	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	2q33.2	CTLA4	rs11571303-G	0.61	5E-11		1.39	[1.26-1.53]	Illumina [7068382] (imputed)	N
2146	chr2	204708645	204708646	rs231804	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	2q33.2	CTLA4	rs231804-?	NR	2E-8		0.1035	unit increase	Illumina [up to 143074]	N
2146	chr2	204720138	204720139	rs11571292	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	2q33.2		rs11571292-A	0.612933989	1E-14		1.277188	[1.200332662-1.35896404]	Illumina [8919992] (imputed)	N
2146	chr2	204721751	204721752	rs1024161	21841780	Chu X	2011-08-14	Nat Genet	A genome-wide association study identifies two new risk loci for Graves' disease.	Graves' disease	1,468 Chinese ancestry cases, 1,490 Chinese ancestry controls	3,994 Chinese ancestry cases, 3,510 Chinese ancestry controls	2q33.2	CD28, CTLA4	rs1024161-T	0.69	2E-17		1.3	[1.23-1.38]	Illumina [486049]	N
2146	chr2	204721751	204721752	rs1024161	20596022	Petukhova L	2010-07-01	Nature	Genome-wide association study in alopecia areata implicates both innate and adaptive immunity.	Alopecia areata	Up to 1,054 European ancestry cases, 3,278 European ancestry controls	NA	2q33.2	ICOS, CTLA4	rs1024161-A	0.40	4E-13		1.44	[1.30-1.59]	Illumina [463301]	N
2146	chr2	204722158	204722159	rs1024162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.2		rs1024162-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2146	chr2	204722751	204722752	rs926169	30659077	Onengut-Gumuscu S	2019-01-18	Diabetes Care	Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score.	Type 1 diabetes	1,021 African American cases, 2,928 African American controls	NA	2q33.2	CTLA4	rs926169-T	0.36	9E-6		1.28	[1.15-1.42]	Illumina [114874]	N
2146	chr2	204725943	204725944	rs78847176	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - levothyroxine sodium (UKB data field 20003_1141191044)	18,688 European ancestry cases, 437,588 European ancestry controls	NA	2q33.2		rs78847176-T	0.006677	4E-9		0.4	[0.27-0.53] unit increase	NR [11842647] (imputed)	N
2146	chr2	204729152	204729153	rs231770	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q33.2		rs231770-T	0.613721493	5E-18		0.24659915	[0.19-0.3] unit increase	Illumina [13429311] (imputed)	N
2146	chr2	204729152	204729153	rs231770	25643325	Renton AE	2015-04-01	JAMA Neurol	A genome-wide association study of myasthenia gravis.	Myasthenia gravis	972 European ancestry cases, 1,977 European ancestry controls	423 European ancestry cases, 467 European ancestry controls	2q33.2	CTLA4	rs231770-T	0.38	9E-11		1.39	[NR]	Illumina [8114394] (imputed)	N
2146	chr2	204732713	204732714	rs231775	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	2q33.2	CTLA4	rs231775-G	0.385	2E-74		1.18	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2146	chr2	204732713	204732714	rs231775	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	2q33.2	CD28, CTLA4, ICOS	rs231775-G	NR	2E-20		1.4		Illumina [1233578] (imputed)	N
2147	chr2	204734486	204734487	rs231779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q33.2		rs231779-T	NR	4E-26		0.2352	[0.19-0.28] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
2147	chr2	204734486	204734487	rs231779	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	2q33.2	CTLA4	rs231779-C	0.618826	1E-14		1.0638298	[1.05-1.09]	Affymetrix [7600000] (imputed)	N
2147	chr2	204734486	204734487	rs231779	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q33.2	NR	rs231779-?	NR	2E-6		0.0403	[0.024-0.057] unit increase	Illumina [at least 560000] (imputed)	N
2147	chr2	204734486	204734487	rs231779	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	2q33.2	CTLA4	rs231779-T	0.365	7E-6		1.126	[1.07-1.19]	Illumina [870065]	N
2147	chr2	204738918	204738919	rs3087243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q33.2		rs3087243-A	NR	4E-88		0.1734	[0.16-0.19] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q33.2		rs3087243-A	NR	5E-47		0.1466	[0.13-0.17] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	2q33.2		rs3087243-A	NR	8E-20		0.2038	[0.16-0.25] unit decrease	Affymetrix, Illumina [25841580] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	2q33.2		rs3087243-?	NR	2E-13		1.0827	[1.06-1.1]	NR [685523]	N
2147	chr2	204738918	204738919	rs3087243	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	0.450314	2E-18		0.095218025	[0.074-0.117] unit increase	Affymetrix [7260263] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	NR	2E-8		0.89	[0.85-0.93]	Illumina [NR] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	NR	6E-6		0.879	[0.82-0.94]	Illumina [5719137] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	2q33.2		rs3087243-A	NR	3E-24		0.88	[0.86-0.9]	NR [13810676] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	0.448827	5E-85		0.1787135	[0.16-0.2] unit decrease	Affymetrix [7288503] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q33.2		rs3087243-?	NR	7E-82				NR [~ 8900000] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	2q33.2		rs3087243-?	NR	7E-49				NR [~ 8900000] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-?	0.55	2E-16		1.2083132		Illumina [252970]	N
2147	chr2	204738918	204738919	rs3087243	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-?	0.5	1E-11		1.1177704		Illumina [252970]	N
2147	chr2	204738918	204738919	rs3087243	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-?		5E-10		1.1201224		Illumina [252970]	N
2147	chr2	204738918	204738919	rs3087243	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	NA	5E-16				Illumina [252970]	N
2147	chr2	204738918	204738919	rs3087243	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.2	CTLA4	rs3087243-A	NR	1E-23		0.138126	[0.091-0.185] unit decrease	Illumina [8380626] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	2q33.2	CTLA4	rs3087243-A	0.45	9E-20	(EA)	0.14051	[0.11-0.17] unit decrease	Illumina [8380626] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	2q33.2	CTLA4, ICOS	rs3087243-?	NR	1E-15		1.105	[1.08-1.14]	Illumina [13676411] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	2q33.2	CTLA4	rs3087243-G	0.55	7E-21		1.1904762		Illumina [135870]	N
2147	chr2	204738918	204738919	rs3087243	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	2q33.2	CD28, CTLA4	rs3087243-G	0.44	9E-15		1.1363636	[1.1-1.18]	Illumina [133816] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	CTLA4	rs3087243-G	0.6	3E-25		1.14	[1.11-1.17]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	2q33.2	CTLA4	rs3087243-G	0.55	4E-22	(EA)	1.15	[1.12-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CD28, CTLA4	rs3087243-?	NR	4E-11				Illumina [129464] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CD28, CTLA4	rs3087243-?	NR	7E-11				Illumina [129464] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	2q33.2	CTLA4	rs3087243-A	NR	2E-17		1.2	[NR]	Affymetrix, Illumina [NR]	N
2147	chr2	204738918	204738919	rs3087243	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	2q33.2	CTLA4	rs3087243-G	0.56	1E-8		1.15	[1.10-1.20]	Affymetrix, Illumina [~ 2716259] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	2q33.2	CTLA4	rs3087243-?	NR	1E-15				Affymetrix, Illumina [841622] (imputed)	N
2147	chr2	204738918	204738919	rs3087243	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	2q33.2	CTLA4	rs3087243-A	NR	8E-11				Affymetrix [up to 335565]	N
2147	chr2	204740674	204740675	rs231725	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2q33.2	CTLA4	rs231725-A	0.3303	1E-10		1.176	[1.12-1.24]	Illumina [8966411] (imputed)	N
2147	chr2	204740865	204740866	rs231726	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	2q33.2	CTLA4	rs231726-C	0.671066	3E-16		1.0752687	[1.05-1.1]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2147	chr2	204741549	204741550	rs231727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q33.2	NR	rs231727-A	NR	3E-11		0.0186	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2147	chr2	204741549	204741550	rs231727	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q33.2	NR	rs231727-A	NR	5E-21		0.0262	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
2147	chr2	204742933	204742934	rs11571302	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CTLA4, ICOS	rs11571302-?	0.52	4E-8		1.1253657		Illumina [129464] (imputed)	N
2147	chr2	204742933	204742934	rs11571302	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	2q33.2	CTLA4, ICOS	rs11571302-?	0.52	5E-7		1.0984182		Illumina [129464] (imputed)	N
2147	chr2	204743800	204743801	rs231729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	2q33.2		rs231729-A	NR	3E-14		0.0764	[0.057-0.096] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
2147	chr2	204745002	204745003	rs11571297	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	2q33.2	CTLA4/ICOS	rs11571297-G	0.507	3E-23		1.4	[1.3-1.49]	Illumina [103875]	N
2147	chr2	204745002	204745003	rs11571297	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	2q33.2	CTLA4/ICOS	rs11571297-G	0.507	2E-23		1.369863	[1.28-1.45]	Illumina [103875]	N
2147	chr2	204746766	204746767	rs11571300	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q33.2	NR	rs11571300-G	NR	4E-10		0.0221	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2147	chr2	204802577	204802578	rs4675374	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	2q33.2	ICOS, CTLA4, CD28	rs4675374-A	0.22	6E-9		1.14	[1.09-1.19]	Illumina [292387]	N
2147	chr2	204805210	204805211	rs77130284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q33.2	NR	rs77130284-T	NR	1E-9		0.0236	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
2148	chr2	204886383	204886384	rs2353319	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	2q33.2	Intergenic	rs2353319-?		9E-6				NR [NR]	N
2148	chr2	204927704	204927705	rs147138549	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	2q33.2	intergenic	rs147138549-?	NR	4E-6				Affymetrix, Illumina [2723488] (imputed)	N
2148	chr2	204983553	204983554	rs16840760	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q33.3	ICOS	rs16840760-G	0.0060	1E-6	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
2149	chr2	205002527	205002528	rs11680702	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	2q33.3	NR	rs11680702-T	NR	4E-6		0.3475	[0.2-0.5] SD units increase	NR [10700000] (imputed)	N
2149	chr2	205014048	205014049	rs219226	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	2q33.3	NR	rs219226-T	0.242656	5E-8		5.45	z score increase	NR [10847151] (imputed)	N
2149	chr2	205038037	205038038	rs113758457	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	2q33.3	NR	rs113758457-A	0.9846	9E-6		0.7309	[0.41-1.05] unit increase	Illumina [NR] (imputed)	N
2149	chr2	205077127	205077128	rs2162003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q33.3		rs2162003-C	NR	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
2149	chr2	205077127	205077128	rs2162003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q33.3		rs2162003-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2149	chr2	205077127	205077128	rs2162003	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q33.3	ICOS	rs2162003-T	0.6048	3E-12		0.1279	[0.092-0.164] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2149	chr2	205093359	205093360	rs11690717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q33.3		rs11690717-T	NR	7E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2149	chr2	205104652	205104653	rs10427204	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs10427204-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2149	chr2	205104652	205104653	rs10427204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs10427204-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2149	chr2	205116050	205116051	rs6711058	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	2q33.3	NR	rs6711058-A	0.266299	3E-9		5.91	z score increase	NR [~ 10847151] (imputed)	N
2150	chr2	205128020	205128021	rs6738181	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	2q33.3	intergenic	rs6738181-A	0.19	5E-6				Affymetrix [614963]	N
2150	chr2	205174866	205174867	rs10190777	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q33.3	PARD3B	rs10190777-C	0.572	9E-12		0.0081	[0.0057-0.0105] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2150	chr2	205188854	205188855	rs10172481	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	ICOS	rs10172481-?	NR	5E-6	(SM 18:1)	0.20873111	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
2150	chr2	205189082	205189083	rs4673294	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	2q33.3	PARD3B	rs4673294-?	NR	5E-6		1.8308313	[1.41-2.38]	Illumina [5407269] (imputed)	N
2150	chr2	205189232	205189233	rs4673295	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	2q33.3		rs4673295-?	NR	6E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2150	chr2	205204117	205204118	rs6739929	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	ICOS	rs6739929-?	NR	7E-6	(SM 16:0)	0.1541366	[0.087-0.221] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2150	chr2	205204117	205204118	rs6739929	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	ICOS	rs6739929-?	NR	5E-6	(SM 22:1)	0.15601946	[0.089-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2150	chr2	205246705	205246706	rs4487073	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	2q33.3	ICOS, PARD3B	rs4487073-C	0.568	5E-6		2.03	[2.31-1.97]	Affymetrix [up to 27494467] (imputed)	N
2151	chr2	205317810	205317811	rs1156250	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	2q33.3	NR	rs1156250-G	0.119	8E-6		0.2281	[0.13-0.33] unit increase	Illumina [up to 730525]	N
2151	chr2	205362819	205362820	rs62179345	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs62179345-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
2151	chr2	205365850	205365851	rs1470545	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.3	NA	rs1470545-T	0.0374	6E-18		0.037	[0.029-0.045] unit increase	NR [~ 27400000] (imputed)	N
2151	chr2	205365850	205365851	rs1470545	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q33.3	NA	rs1470545-T	0.0374	6E-18		0.037	[0.029-0.045] unit increase	NR [~ 27400000] (imputed)	N
2151	chr2	205368457	205368458	rs4673301	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	2q33.3	NR	rs4673301-?		4E-6	(EA)			Illumina [up to 524000]	N
2151	chr2	205372495	205372496	rs1374717	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.3	NR	rs1374717-?	NR	2E-6				Affymetrix [NR]	N
2151	chr2	205375132	205375133	rs7590658	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q33.3	NR	rs7590658-?	NR	9E-6	(female)	0.29773	[0.17-0.43] unit decrease	Affymetrix [7794483] (imputed)	N
2151	chr2	205375132	205375133	rs7590658	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q33.3	NR	rs7590658-?	NR	8E-6	(male)	0.22471	[0.13-0.32] unit decrease	Affymetrix [7794483] (imputed)	N
2151	chr2	205375132	205375133	rs7590658	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q33.3	NR	rs7590658-?	NR	3E-10		0.25821	[0.18-0.34] unit decrease	Affymetrix [7794483] (imputed)	N
2151	chr2	205375908	205375909	rs4482463	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q33.3	NR	rs4482463-C	0.2443	2E-8		0.0316	[0.021-0.043] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2151	chr2	205375908	205375909	rs4482463	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q33.3	PARD3B	rs4482463-C	0.0770298	2E-13		0.018863	[0.014-0.024] unit increase	Affymetrix [12370749]	N
2151	chr2	205375908	205375909	rs4482463	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q33.3	NR	rs4482463-C	0.07479	2E-14		0.03617955	[0.027-0.045] unit increase	Affymetrix [10549349] (imputed)	N
2151	chr2	205375908	205375909	rs4482463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs4482463-?	NR	1E-20				NR [~ 8900000] (imputed)	N
2151	chr2	205375912	205375913	rs4405740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q33.3		rs4405740-C	NR	3E-16		0.0166	[0.013-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2151	chr2	205375912	205375913	rs4405740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q33.3		rs4405740-C	NR	1E-14		0.0181	[0.014-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2151	chr2	205381850	205381851	rs12694002	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q33.3	NR	rs12694002-?	NR	9E-6	(male)	0.38343	[0.21-0.55] unit increase	Affymetrix [7794483] (imputed)	N
2151	chr2	205381850	205381851	rs12694002	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q33.3	NR	rs12694002-?	NR	7E-9		0.31699	[0.21-0.42] unit increase	Affymetrix [7794483] (imputed)	N
2151	chr2	205385321	205385322	rs7569376	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q33.3	ICOS, PARD3B	rs7569376-C	0.79	4E-8		0.016	[0.01-0.022] unit decrease	Illumina [6108953] (imputed)	N
2151	chr2	205388945	205388946	rs1868069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs1868069-?	NR	8E-15				Affymetrix [~ 8270000] (imputed)	N
2152	chr2	205414822	205414823	rs1374714	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	2q33.3	PARD3B	rs1374714-?	NR	5E-8		5.445	NR unit increase	Illumina [up to 1520000] (imputed)	N
2152	chr2	205466371	205466372	rs79716947	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q33.3	NA	rs79716947-A	0.9646	2E-13		0.0382	[0.028-0.048] unit decrease	NR [~ 27400000] (imputed)	N
2152	chr2	205520620	205520621	rs78980179	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Triglyceride levels	2,732 Kuwaiti ancestry individuals	NA	2q33.3	PARD3B	rs78980179-?	NR	3E-7		5.121	NR unit increase	Illumina [up to 1520000] (imputed)	N
2153	chr2	205635819	205635820	rs17450756	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	2q33.3	PARD3B	rs17450756-A	0.011	2E-6		0.2191	[0.13-0.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2154	chr2	205707771	205707772	rs77254624	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q33.3	NR	rs77254624-?	NR	3E-8				Illumina [7760689] (imputed)	N
2154	chr2	205732292	205732293	rs79145148	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs79145148-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2154	chr2	205761831	205761832	rs13023239	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	2q33.3	PARD3B	rs13023239-A		3E-6		112.73	[65.51-159.95] unit decrease	Affymetrix, Illumina [at least 646791] (imputed)	N
2155	chr2	205790811	205790812	rs12694012	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.3	NR	rs12694012-?	NR	3E-11				Affymetrix [NR]	N
2155	chr2	205864831	205864832	rs2335704	20694014	Thye T	2010-08-08	Nat Genet	Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.	Tuberculosis	2,237 Sub-Saharan African ancestry cases, 3,122 Sub-Saharan African ancestry controls	1,462 Sub-Saharan African ancestry cases, 4,604 Sub-Saharan African ancestry controls	2q33.3	intergenic	rs2335704-C	0.20	2E-6		1.19	[1.10-1.30]	Affymetrix [> 333754] (imputed)	N
2155	chr2	205900874	205900875	rs183770498	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q33.3	PARD3B	rs183770498-T	0.967	2E-7	(AA)	0.052	unit decrease	Illumina [NR] (imputed)	N
2155	chr2	205906145	205906146	rs115955602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs115955602-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2156	chr2	205974841	205974842	rs73057184	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q33.3	PARD3B	rs73057184-C	0.78	2E-10		0.098	[0.069-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2156	chr2	205995405	205995406	rs16837000	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	NR	rs16837000-T	0.214	9E-13	(Neuropilin-2, NRP2.6590.54.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
2156	chr2	205996042	205996043	rs11899425	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	2q33.3	NR	rs11899425-A		7E-11		0.12	[0.081-0.159] unit increase	NR [NR]	N
2156	chr2	205998190	205998191	rs62172701	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	2q33.3	PARD3B	rs62172701-A	0.78	1E-9				Affymetrix, Illumina [8002429] (imputed)	N
2156	chr2	206003034	206003035	rs16837021	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q33.3	PARD3B	rs16837021-?	NR	6E-10		0.0944	[0.065-0.124] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
2156	chr2	206006640	206006641	rs7560015	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q33.3	PARD3B	rs7560015-C	0.2353	5E-10		0.099	[0.067-0.131] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2156	chr2	206013397	206013398	rs149564412	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q33.3	NR	rs149564412-?	NR	3E-8				Illumina [7760689] (imputed)	N
2156	chr2	206014978	206014979	rs10180371	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q33.3	PARD3B	rs10180371-A	0.2194	6E-11		0.109	[0.076-0.142] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2156	chr2	206038200	206038201	rs6435274	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q33.3	NR	rs6435274-G	0.2316	3E-8				NR [9056863] (imputed)	N
2156	chr2	206040622	206040623	rs35911047	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.3		rs35911047-G	0.47	4E-8		5.5	z score increase	Affymetrix [9061022] (imputed)	N
2156	chr2	206041216	206041217	rs79648531	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2q33.3	PARD3B	rs79648531-G	0.0104	3E-6		3.551	[2.085-6.048]	Affymetrix, Illumina [14074516] (imputed)	N
2157	chr2	206060636	206060637	rs10153620	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	2q33.3	NR	rs10153620-C		6E-6				Illumina [2373249] (imputed)	N
2157	chr2	206061246	206061247	rs10804146	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q33.3		rs10804146-G	0.47	4E-9				NR [NR] (imputed)	N
2157	chr2	206061246	206061247	rs10804146	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q33.3		rs10804146-G	0.47	1E-11		0.01	% increase	NR [NR] (imputed)	N
2157	chr2	206063297	206063298	rs11681930	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	2q33.3	NR	rs11681930-A		5E-6				Illumina [2373249] (imputed)	N
2157	chr2	206074789	206074790	rs6717591	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs6717591-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2157	chr2	206082906	206082907	rs7564553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs7564553-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2157	chr2	206086170	206086171	rs4675502	22843504	Anney R	2012-07-26	Hum Mol Genet	Individual common variants exert weak effects on the risk for autism spectrum disorders.	Autism	1,419 European ancestry cases from 1416 families	1,314 European ancestry cases from 1301 families	2q33.3	PARD3B	rs4675502-?	NR	4E-7	(Strict, all)	1.28	[1.16-1.41]	Illumina [947233]	N
2157	chr2	206133200	206133201	rs186178198	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q33.3	NR	rs186178198-?	NR	5E-8				Illumina [7760689] (imputed)	N
2157	chr2	206143837	206143838	rs35893647	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	2q33.3	NR	rs35893647-G		8E-6		0.6064	[0.34-0.87] SD units decrease	NR [10700000] (imputed)	N
2157	chr2	206144832	206144833	rs7606468	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q33.3	NR	rs7606468-?	NR	3E-6		0.0082564	[0.0048-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
2157	chr2	206150593	206150594	rs1207421	18471798	Valdes AM	2008-05-08	Am J Hum Genet	Genome-wide association scan identifies a prostaglandin-endoperoxide synthase 2 variant involved in risk of knee osteoarthritis.	Knee osteoarthritis	357 European ancestry cases, 285 European ancestry controls	1,177 European ancestry cases, 2,372 European ancestry controls	2q33.3	PARD3B	rs1207421-?	0.09	6E-6		1.46	[1.24-1.73]	Illumina [413461]	N
2157	chr2	206154364	206154365	rs1207426	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	2q33.3	PARD3B	rs1207426-?		4E-6	(French Canadians)	1.8855188		Illumina [7614484] (imputed)	N
2158	chr2	206242572	206242573	rs2001527	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q33.3	PARD3B	rs2001527-T	NR	8E-6	(AA)			Illumina [up to 11995908] (imputed)	N
2158	chr2	206242572	206242573	rs2001527	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q33.3	PARD3B	rs2001527-T	NR	8E-6				Illumina [up to 11995908] (imputed)	N
2158	chr2	206244563	206244564	rs849210	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q33.3	NR	rs849210-?	NR	2E-6		0.0525	[0.031-0.074] unit decrease	Illumina [at least 560000] (imputed)	N
2158	chr2	206305261	206305262	rs61741390	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q33.3	PARD3B, LOC100132669, NRP2	rs61741390-G	0.001	1E-6		34.03	[3.52-329.29]	Illumina [1556551]	N
2159	chr2	206318592	206318593	rs11884476	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	2q33.3	PARD3B	rs11884476-?	0.94	3E-9		3.32	[NR]	Affymetrix [700022]	N
2159	chr2	206405969	206405970	rs7426144	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q33.3		rs7426144-A	0.43	3E-11		6.66	z score increase	Affymetrix [9061022] (imputed)	N
2159	chr2	206405969	206405970	rs7426144	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q33.3	NR	rs7426144-A	0.4157	2E-12				NR [9056863] (imputed)	N
2159	chr2	206432711	206432712	rs146112665	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	2q33.3	NR	rs146112665-C	NR	5E-6		5.246	[2.58-10.68]	Illumina [13976150] (imputed)	N
2159	chr2	206435708	206435709	rs7420812	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	2q33.3	PARD3B, NRP2	rs7420812-T	0.3	7E-10		1.33	[1.22-1.46]	Illumina [792342]	N
2160	chr2	206480352	206480353	rs80119103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.3	NR	rs80119103-A	0.01394	2E-8	(CTSD)	2.233	NR unit increase	Illumina [1671387] (imputed)	N
2160	chr2	206495819	206495820	rs75693602	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q33.3	Intergenic	rs75693602-?		7E-6		1.89	[1.43-2.49]	Illumina [7645193] (imputed)	N
2160	chr2	206551977	206551978	rs861078	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	2q33.3	NR	rs861078-T	0.651448	4E-6		1.067	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
2160	chr2	206554113	206554114	rs872146	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q33.3		rs872146-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2161	chr2	206576182	206576183	rs863707	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q33.3		rs863707-C	0.37	2E-14		7.65	z score increase	Affymetrix [9061022] (imputed)	N
2161	chr2	206580818	206580819	rs187186781	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	2q33.3	NR	rs187186781-C		3E-6		0.6138	[0.36-0.87] SD units increase	NR [10700000] (imputed)	N
2161	chr2	206586466	206586467	rs849540	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q33.3	NR	rs849540-A	0.4956	5E-9				NR [9056863] (imputed)	N
2161	chr2	206599427	206599428	rs1861386	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q33.3	NR	rs1861386-C	0.402855	7E-11		0.0202154	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
2161	chr2	206634868	206634869	rs16837641	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q33.3	NRP2	rs16837641-G	0.72359375	5E-7	(NRP2, 6590_54_3)	0.13644442	[0.083-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
2161	chr2	206634868	206634869	rs16837641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	NRP2	rs16837641-A	0.322	1E-14	(Neuropilin-2, NRP2.6590.54.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
2161	chr2	206636122	206636123	rs2241153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q33.3		rs2241153-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2161	chr2	206668118	206668118	rs78977169	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Neuropathy x type 2 diabetes interaction	40,475 European ancestry cases, 110,331 European ancestry controls	NA	2q33.3	NRP2	rs78977169-C	0.023	3E-8				Affymetrix [at least 723305] (imputed)	N
2162	chr2	206741800	206741801	rs2080487	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q33.3	NR	rs2080487-?	NR	4E-8				Affymetrix [NR]	N
2162	chr2	206801569	206801570	rs4675569	33891350	Vann CG	2021-05-01	FASEB J	An intron variant of the GLI family zinc finger 3 (GLI3) gene differentiates resistance training-induced muscle fiber hypertrophy in younger men.	Response to resistance training (vastus lateralis fiber area change)	109 men	NR	2q33.3	NR	rs4675569-?	NR	7E-7				NR [315000]	N
2162	chr2	206814900	206814901	rs116765785	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2q33.3	NR	rs116765785-T	NR	1E-6	(EA)	0.2816	[0.17-0.39] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
2162	chr2	206822418	206822419	rs60132122	34446064	Cade BE	2021-08-26	Genome Med	Whole-genome association analyses of sleep-disordered breathing phenotypes in the NHLBI TOPMed program.	Obstructive sleep apnea trait (average oxyhemoglobin desaturation per event)	10,060 European, African American, Hispanic/Latino or East Asian ancestry individuals	NA	2q33.3		rs60132122-T	NR	6E-8		0.122	[0.077-0.167] unit increase	Affymetrix, Illumina [22105437] (imputed)	N
2162	chr2	206824721	206824722	rs13032812	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2q33.3		rs13032812-?	NR	6E-6		0.904292	[0.86-0.95]	NR [680312]	N
2163	chr2	206831859	206831860	rs3732085	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q33.3	INO80D, NDUFS1, NRP2	rs3732085-C		4E-12		0.0063	[0.0045-0.0081] unit increase	Affymetrix [13304133] (imputed)	N
2163	chr2	206836611	206836612	rs7603514	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	2q33.3	FLJ20309	rs7603514-A	0.20	8E-6		1.36	[1.19-1.56]	Illumina [457251]	N
2163	chr2	206839967	206839968	rs13390276	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2q33.3		rs13390276-C	0.634989	6E-8		1.0861	NR	Affymetrix [7846216] (imputed)	N
2163	chr2	206876812	206876813	rs77534600	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q33.3	NR	rs77534600-A	0.0893	2E-8		0.0106145	[0.0069-0.0143] unit decrease	NR [9732723] (imputed)	N
2163	chr2	206891280	206891281	rs147537311	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q33.3	NR	rs147537311-T	0.0885	4E-8		0.0128269	[0.0083-0.0174] unit decrease	NR [~ 9732723] (imputed)	N
2163	chr2	206914391	206914392	rs1016660	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	2q33.3	NR	rs1016660-C	0.058	6E-6		0.2307	[0.13-0.33] unit increase	Illumina [up to 730525]	N
2163	chr2	206932923	206932924	rs6739896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q33.3	INO80D	rs6739896-G	NR	2E-8		0.0166831	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2163	chr2	206932923	206932924	rs6739896	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q33.3	INO80D	rs6739896-G	NR	4E-9		0.0175053	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
2163	chr2	206945074	206945075	rs10170266	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q33.3	INO80D	rs10170266-C	0.63	8E-9		0.02145782	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2163	chr2	206949886	206949887	rs11893623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q33.3	NR	rs11893623-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2163	chr2	206949886	206949887	rs11893623	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q33.3	NR	rs11893623-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2163	chr2	206953056	206953057	rs12694039	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	INO80D	rs12694039-G	0.427	1E-23	(C-C motif chemokine 28, CCL28.2890.59.2)	0.25	[0.21-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
2163	chr2	206956137	206956138	rs184033703	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q33.3		rs184033703-A	0.05762	1E-9		0.032	[0.022-0.042] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2163	chr2	206956137	206956138	rs184033703	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q33.3	INO80D, NDUFS1	rs184033703-A	0.0585	1E-13		1.0607		Affymetrix [11880941] (imputed)	N
2163	chr2	206956137	206956138	rs184033703	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q33.3	INO80D, NDUFS1	rs184033703-A	0.0585	1E-13		1.0593971		Affymetrix [11880941] (imputed)	N
2163	chr2	206956137	206956138	rs184033703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q33.3		rs184033703-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2163	chr2	206962187	206962188	rs34927946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q33.3	NR	rs34927946-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2164	chr2	206999338	206999339	rs13393316	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	2q33.3	NDUFS1	rs13393316-A	0.86	1E-6		1.8867927	[1.47-2.44]	Illumina [7033776] (imputed)	N
2164	chr2	207002558	207002559	rs6435326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q33.3		rs6435326-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2164	chr2	207002558	207002559	rs6435326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.3		rs6435326-A	0.5148	8E-11		0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2164	chr2	207002558	207002559	rs6435326	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.3	Intergenic	rs6435326-A	0.5148	8E-11	(MTAG)	0.0085	[0.006-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2164	chr2	207023507	207023508	rs4147711	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL28	5,367 Icelandic ancestry individuals	NA	2q33.3		rs4147711-C	0.4314	9E-70		0.331715	[0.29-0.37] unit decrease	Illumina [7506463] (imputed)	N
2164	chr2	207033305	207033306	rs115067791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q33.3	NR	rs115067791-A	0.057376	4E-9		0.028460527	[0.019-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2164	chr2	207033305	207033306	rs115067791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q33.3	NR	rs115067791-A	0.0573860000000001	1E-9		0.029510975	[0.02-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2164	chr2	207038420	207038421	rs13011260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q33.3		rs13011260-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2164	chr2	207064334	207064335	rs114670539	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	2q33.3	GPR1	rs114670539-T	0.05	3E-8		0.099	[0.064-0.134] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
2164	chr2	207064334	207064335	rs114670539	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2q33.3	NR	rs114670539-T	NR	5E-8	(EA)	0.2699	[0.17-0.37] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
2164	chr2	207066473	207066474	rs115319174	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q33.3	GPR1	rs115319174-G	0.942407	3E-44		0.0423448	[0.036-0.048] unit decrease	Affymetrix [12370749]	N
2164	chr2	207067502	207067503	rs16838070	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL28	5,367 Icelandic ancestry individuals	NA	2q33.3		rs16838070-A	0.1543	2E-16		0.215136	[0.16-0.27] unit decrease	Illumina [7506463] (imputed)	N
2164	chr2	207081194	207081195	rs62195405	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.3	GPR1	rs62195405-A	0.4259	9E-15		0.0147	[0.011-0.018] unit increase	Affymetrix [18391927] (imputed)	N
2164	chr2	207084820	207084821	rs13028246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q33.3	GPR1, RN7SKP200	rs13028246-T	0.5171	1E-9		0.013664011	[0.0093-0.018] unit increase	Affymetrix [93095623] (imputed)	N
2165	chr2	207101229	207101230	rs111520052	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	2q33.3	GPR1	rs111520052-G	0.988	2E-8	(men)	0.19	[0.12-0.26] unit increase	Affymetrix [~ 9000000] (imputed)	N
2165	chr2	207121781	207121782	rs2058710	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	2q33.3	ZDBF2, GPR1, ADAM23	rs2058710-A	NR	9E-6		1.24	[NR]	Affymetrix [745006]	N
2165	chr2	207160351	207160352	rs55677225	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs55677225-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2165	chr2	207160351	207160352	rs55677225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs55677225-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2166	chr2	207233114	207233115	rs10497882	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q33.3	NA	rs10497882-T	0.7234	2E-12		0.0127	[0.0092-0.0162] unit decrease	NR [~ 27400000] (imputed)	N
2166	chr2	207244782	207244783	rs972540	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.3	NA	rs972540-A	0.7224	4E-13		0.0131	[0.0096-0.0166] unit decrease	NR [~ 27400000] (imputed)	N
2166	chr2	207244782	207244783	rs972540	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q33.3	NR	rs972540-A	NR	2E-10		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2166	chr2	207244782	207244783	rs972540	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q33.3	ZDBF2, ADAM23	rs972540-G	0.24	6E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
2166	chr2	207244782	207244783	rs972540	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q33.3	INO80D, EEF1B2, ZDBF2, GCSHP3, NDUFS1, SNORD51, SNORA41, GPR1, DYTN, LOC200726, FASTKD2, MDH1B, MIR3130-1, MIR3130-2	rs972540-A	0.731068161888431	1E-9		0.018581709	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2166	chr2	207244782	207244783	rs972540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q33.3	ADAM23	rs972540-G	0.269	2E-7	(EA)	0.018	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2166	chr2	207244782	207244783	rs972540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q33.3	ADAM23	rs972540-G	0.266	4E-7		0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2166	chr2	207266280	207266281	rs181263645	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	2q33.3	NR	rs181263645-A	NR	1E-6	(EA)	0.2379	[0.14-0.33] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
2166	chr2	207266280	207266281	rs181263645	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	2q33.3	AC017081.2	rs181263645-G	0.936876333	4E-6		0.286888	[0.17-0.41] unit decrease	Illumina [6952813] (imputed)	N
2166	chr2	207266780	207266781	rs10180974	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2q33.3		rs10180974-?	NR	8E-7		0.8627113	[0.52-1.2] unit increase	Illumina [9875426] (imputed)	N
2166	chr2	207281446	207281447	rs13387838	26604143	Felix JF	2015-11-24	Hum Mol Genet	Genome-wide association analysis identifies three new susceptibility loci for childhood body mass index.	Childhood body mass index	34,744 European ancestry children	11,313 European ancestry children	2q33.3	ADAM23	rs13387838-A	0.04	3E-8		0.139	[0.09-0.188] unit increase	Affymetrix, Illumina [2499691] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM23	5,366 Icelandic ancestry individuals	NA	2q33.3		rs1448903-G	0.09963	8E-63		0.517162	[0.46-0.58] unit increase	Illumina [7506463] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q33.3	ADAM23	rs1448903-G	0.0886	3E-17	(ADAM 23)	0.76171	[0.59-0.94] unit increase	Illumina [8683751] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q33.3	ADAM23	rs1448903-A	0.89921875	2E-40	(ADAM23, 7049_2_3)	0.5370253	[0.46-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	NR	rs1448903-G	0.103	1E-62	(Disintegrin and metalloproteinase domain-containing protein 23, ADAM23.7049.2.3)	0.65	[0.57-0.73] unit increase	Affymetrix [10572788] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q33.3	ADAM23	rs1448903-G	0.09	5E-9		1.08	[1.07-1.1]	Illumina [at least 560000] (imputed)	N
2166	chr2	207308960	207308961	rs1448903	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q33.3	ADAM23	rs1448903-?	NR	5E-9		1.085	[1.056-1.115]	Illumina [13757430] (imputed)	N
2166	chr2	207321293	207321293	rs546962851	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	2q33.3	ADAM23	rs546962851-A	0.9933	7E-6		0.332	[0.19-0.48] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2166	chr2	207324281	207324282	rs1921673	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	ADAM23	rs1921673-G	0.685	3E-64	(Disintegrin and metalloproteinase domain-containing protein 23, ADAM23.7049.2.3)	0.43	[0.37-0.49] unit increase	Affymetrix [10572788] (imputed)	N
2166	chr2	207340138	207340139	rs7598482	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM23	5,366 Icelandic ancestry individuals	NA	2q33.3		rs7598482-T	0.3491	1E-38		0.253107	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
2167	chr2	207382700	207382701	rs33998651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	NR	rs33998651-A	0.028	3E-25	(Disintegrin and metalloproteinase domain-containing protein 23, ADAM23.7049.2.3)	0.77	[0.63-0.91] unit decrease	Affymetrix [10572788] (imputed)	N
2167	chr2	207392257	207392258	rs143219430	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM23	5,366 Icelandic ancestry individuals	NA	2q33.3		rs143219430-C	0.02696	8E-47		0.817133	[0.71-0.93] unit decrease	Illumina [7506463] (imputed)	N
2167	chr2	207392257	207392258	rs143219430	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q33.3	NR	rs143219430-C	0.024	3E-37	(Disintegrin and metalloproteinase domain-containing protein 23, ADAM23.7049.2.3)	1.04	[0.88-1.2] unit decrease	Affymetrix [10572788] (imputed)	N
2167	chr2	207413624	207413625	rs13429599	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	2q33.3	ADAM23	rs13429599-A	0.2706	2E-14	(ADAM 23)	0.45801	[0.34-0.58] unit increase	Illumina [8683751] (imputed)	N
2167	chr2	207418379	207418380	rs182276090	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	2q33.3	ADAM23	rs182276090-A	0.9948	7E-6		0.4697	[0.27-0.67] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2167	chr2	207431294	207431295	rs72956618	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	2q33.3	NR	rs72956618-?	NR	2E-8		0.084	[0.055-0.113] unit increase	Illumina [at least 560000] (imputed)	N
2167	chr2	207468006	207468007	rs150175599	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	2q33.3	ADAM23, DYTN	rs150175599-?	NR	2E-8	(female)	0.0522276	[0.034-0.07] unit decrease	Affymetrix [25921788] (imputed)	N
2168	chr2	207509761	207509762	rs12471404	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADAM23	5,366 Icelandic ancestry individuals	NA	2q33.3		rs12471404-C	0.02838	3E-30		0.640873	[0.53-0.75] unit decrease	Illumina [7506463] (imputed)	N
2168	chr2	207549511	207549512	rs113027826	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid t-tau:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry health	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	2q33.3	DYTN	rs113027826-T	0.14	4E-7		0.4164	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2168	chr2	207560888	207560889	rs16838595	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	2q33.3	DYTN	rs16838595-T	NR	9E-6		0.969	[0.956- 0.983]	Illumina [6740241] (imputed)	N
2168	chr2	207577854	207577855	rs75358501	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q33.3	NR	rs75358501-?	NR	3E-7	(AA)	0.8915	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2168	chr2	207598672	207598673	rs144362393	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.3	NR	rs144362393-G	0.01045	1E-8	(PLD3)	0.0286	NR unit increase	Illumina [1671387] (imputed)	N
2169	chr2	207634235	207634236	rs2277912	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Height	1,792 Filipino ancestry females	NA	2q33.3	FASTKD2	rs2277912-G	0.15	5E-6		1.07	[0.62-1.52] cm increase	Affymetrix [2073674] (imputed)	N
2169	chr2	207646673	207646674	rs7594645	25385369	Ramanan VK	2014-11-11	Mol Psychiatry	FASTKD2 is associated with memory and hippocampal structure in older adults.	Episodic memory	5,283 European ancestry individuals, 817 African American individuals, 605 individuals	6,687 European ancestry individuals, 711 African American individuals, 363 individuals	2q33.3	FASTKD2, MIR3130-1, MIR3130-2	rs7594645-G	0.072	4E-9		0.072	unit increase	Illumina [1681327]	N
2169	chr2	207654320	207654320	rs145455367	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2q33.3	NR	rs145455367-?	NR	2E-6		0.049273	[0.029-0.069] unit increase	Affymetrix [9658292] (imputed)	N
2169	chr2	207683377	207683378	rs6749463	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	2q33.3		rs6749463-?	NR	1E-9				Affymetrix [NR] (imputed)	N
2169	chr2	207693115	207693116	rs12473559	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	2q33.3	NR	rs12473559-?	NR	5E-7		0.0811	[0.05-0.113] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
2169	chr2	207711973	207711974	rs7581388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	MDH1B	rs7581388-?	NR	9E-7	(TAG 58:8)	0.32714993	[0.2-0.46] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2169	chr2	207711973	207711974	rs7581388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	MDH1B	rs7581388-?	NR	3E-6	(TAG 58:9)	0.31200707	[0.18-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2169	chr2	207711973	207711974	rs7581388	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q33.3	MDH1B	rs7581388-?	NR	3E-6	(PC 38:6)	0.31293085	[0.18-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2169	chr2	207717782	207717783	rs6755560	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	2q33.3	FASTKD2	rs6755560-T	0.32	2E-6	(Tri-Tetra/cyclic antidepressants)			Affymetrix, Illumina [~ 2500000] (imputed)	N
2169	chr2	207725615	207725616	rs10192834	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q33.3		rs10192834-T	0.655	2E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2169	chr2	207725615	207725616	rs10192834	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.3	Intergenic	rs10192834-T	0.655	2E-8	(MTAG)	0.0077	[0.005-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2170	chr2	207818122	207818123	rs188543627	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q33.3	NR	rs188543627-T	0.0122	2E-8	(CTSB)	0.5613	NR unit increase	Illumina [1671387] (imputed)	N
2170	chr2	207840331	207840332	rs4675644	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2q33.3	intergenic	rs4675644-?	NR	9E-6	(FEV1 decline in non-asthmatics)	0.1808	[0.10-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
2170	chr2	207855336	207855337	rs78663609	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	2q33.3	NR	rs78663609-?		3E-6		0.045	[0.025-0.065] unit increase	Illumina [7533529] (imputed)	N
2170	chr2	207856364	207856365	rs9288377	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	2q33.3	KLF7	rs9288377-G	0.366	5E-6		0.59	[0.47-0.74]	Affymetrix, Illumina [82996] (imputed)	N
2170	chr2	207877464	207877465	rs1453160	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q33.3	CPO	rs1453160-A	0.13	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
2171	chr2	207889079	207889080	rs6712846	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2q33.3	CPO, KLF7	rs6712846-A	0.525	5E-8		0.00954	[0.0061-0.013] unit increase	Affymetrix [11709857] (imputed)	N
2171	chr2	207902847	207902848	rs1990809	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q33.3		rs1990809-T	0.39	6E-10		6.19	z score increase	Affymetrix [9061022] (imputed)	N
2171	chr2	207928121	207928122	rs1263602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q33.3		rs1263602-?	NR	4E-11				NR [~ 8900000] (imputed)	N
2171	chr2	207936408	207936408	rs56217929	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	2q33.3	KLF7	rs56217929-?	NR	9E-8		0.31	[0.20-0.42] unit increase	Illumina [> 2600000] (imputed)	N
2171	chr2	207936910	207936911	rs1263629	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs1263629-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
2171	chr2	207936910	207936911	rs1263629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs1263629-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2171	chr2	207948333	207948334	rs147692858	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (pleiotropy)	944 European ancestry cases, 4,320 European ancestry controls	NA	2q33.3	KLF7	rs147692858-?	NR	3E-6		1.57	1.3-1.9	Illumina [959859] (imputed)	N
2171	chr2	207955476	207955477	rs1271272	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q33.3	KLF7	rs1271272-A	0.3147	3E-8		0.011995592	[0.0078-0.0162] unit decrease	Affymetrix [11514654] (imputed)	N
2171	chr2	207955476	207955477	rs1271272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q33.3		rs1271272-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2171	chr2	207956107	207956108	rs1263618	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q33.3	KLF7	rs1263618-C	0.312546	1E-9		0.014798547	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr2	207956107	207956108	rs1263618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.3	NR	rs1263618-C	0.329261	8E-12				Affymetrix, Illumina [24588908] (imputed)	N
2171	chr2	207958796	207958797	rs1263616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q33.3		rs1263616-C	NR	8E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2171	chr2	207973814	207973815	rs17282552	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	2q33.3	NR	rs17282552-C		8E-7		0.2001	[0.12-0.28] SD units increase	NR [10700000] (imputed)	N
2171	chr2	207976282	207976283	rs141009259	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	2q33.3	NR	rs141009259-C	NR	2E-6		0.6178	[0.36-0.88] SD units increase	NR [10700000] (imputed)	N
2171	chr2	207977252	207977253	rs1263627	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.3	NA	rs1263627-A	0.7595	7E-11		0.013	[0.0091-0.0169] unit decrease	NR [~ 27400000] (imputed)	N
2171	chr2	207996446	207996447	rs1263671	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q33.3	KLF7	rs1263671-T	0.8368	5E-9		0.1394	[0.093-0.186] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q33.3		rs7583880-A	NR	1E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q33.3		rs7583880-A	NR	3E-16		0.0149	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q33.3	KLF7	rs7583880-A	0.692414	5E-14		0.018060043	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q33.3	KLF7	rs7583880-A	0.692414	1E-19		0.021841256	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.3	NR	rs7583880-A	0.69714	1E-16				Affymetrix, Illumina [24332387] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q33.3		rs7583880-?	NR	2E-12				NR [~ 8900000] (imputed)	N
2171	chr2	207999712	207999713	rs7583880	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q33.3	KLF7	rs7583880-A	0.6915	6E-9		0.02247999	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2171	chr2	208000821	208000822	rs1320929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q33.3	KLF7	rs1320929-A	0.4367	6E-13		0.0137	[0.01-0.0174] unit increase	Affymetrix [18391927] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q33.3	KLF7	rs768090-T	0.682436	1E-17		0.02042834	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.3	NR	rs768090-T	0.689678	2E-23				Affymetrix, Illumina [24653286] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q33.3	NR	rs768090-T	0.680436	9E-22		0.019066	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.3	NR	rs768090-T	0.68971	3E-26				Affymetrix, Illumina [24558453] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q33.3	NR	rs768090-T	0.680367	2E-24		0.020296	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2171	chr2	208003578	208003579	rs768090	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q33.3	KLF7	rs768090-A		4E-12		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2171	chr2	208003578	208003579	rs768090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2q33.3	KLF7	rs768090-T	0.68	1E-10		0.02474935	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2171	chr2	208003578	208003579	rs768090	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q33.3	KLF7	rs768090-T	0.68	5E-11		0.02503171	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2171	chr2	208010352	208010353	rs3791995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q33.3		rs3791995-G	NR	2E-15		0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2171	chr2	208010352	208010353	rs3791995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q33.3	NR	rs3791995-G	0.66531	1E-15		0.015778	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2172	chr2	208012508	208012509	rs2284932	25985088	Oguchi T	2015-05-18	PLoS One	Investigation of susceptibility genes triggering lachrymal/salivary gland lesion complications in Japanese patients with type 1 autoimmune pancreatitis.	Lachrymal/Salivary gland lesion in type 1 autoimmune pancreatitis	50 Japanese ancestry cases with lesions, 53 Japanese ancestry cases without lesions	NA	2q33.3	KLF7	rs2284932-C	NR	3E-6		4.35	[2.32-8.16]	Affymetrix [12033]	N
2172	chr2	208025149	208025150	rs9653332	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q33.3	NA	rs9653332-C	0.3453	4E-8	(Male)	1.058	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
2172	chr2	208042580	208042581	rs55772859	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q33.3	NR	rs55772859-A	0.3106	5E-11		1.043	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2172	chr2	208043912	208043913	rs7592120	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs7592120-?	NR	5E-14	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2172	chr2	208044469	208044470	rs62188629	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	2q33.3	NR	rs62188629-A	0.3136	5E-13		1.017	[1.012-1.022]	NR [8098588] (imputed)	N
2172	chr2	208049580	208049581	rs2111592	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	2q33.3	NR	rs2111592-A	0.3141	1E-8		0.025151651	[0.016-0.034] unit increase	NR [NR]	N
2172	chr2	208055946	208055947	rs1263673	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs1263673-?	NR	6E-10	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2172	chr2	208059639	208059640	rs2360675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs2360675-?	NR	6E-12	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
2172	chr2	208059639	208059640	rs2360675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs2360675-?	NR	4E-13	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2172	chr2	208059639	208059640	rs2360675	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	2q33.3	KLF7	rs2360675-?	NR	2E-10		0.027	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
2172	chr2	208080974	208080975	rs759663	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs759663-?	NR	1E-10	(cerebellar vermal lobules VI VII)			NR [9227495] (imputed)	N
2172	chr2	208082650	208082651	rs6739830	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q33.3		rs6739830-?	NR	4E-8				NR [NR]	N
2172	chr2	208082650	208082651	rs6739830	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q33.3		rs6739830-?	NR	4E-9				NR [NR]	N
2172	chr2	208087138	208087139	rs741475	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	2q33.3		rs741475-?	NR	8E-9		5.7745442	z score decrease	Affymetrix [NR] (imputed)	N
2172	chr2	208088536	208088537	rs960379	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q33.3		rs960379-?	NR	2E-8				NR [NR]	N
2172	chr2	208088536	208088537	rs960379	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q33.3		rs960379-?	NR	2E-8				NR [NR]	N
2172	chr2	208088790	208088791	rs1987285	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q33.3		rs1987285-?	NR	3E-8				NR [NR]	N
2172	chr2	208100439	208100440	rs55917969	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q33.3	NR	rs55917969-?	NR	1E-10	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2172	chr2	208118300	208118301	rs12621900	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q33.3	NR	rs12621900-C	NR	2E-9		1.048	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
2173	chr2	208230142	208230143	rs10804160	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	527 Japanese ancestry men	NA	2q33.3	AC007879.5	rs10804160-C	0.46	5E-7		0.0761	[0.047-0.105] unit decrease	Illumina [544877]	N
2173	chr2	208250521	208250522	rs9973932	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q33.3	NR	rs9973932-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2173	chr2	208250521	208250522	rs9973932	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q33.3		rs9973932-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2173	chr2	208255517	208255518	rs17203016	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	2q33.3	Intergenic	rs17203016-A	NR	1E-8		0.022	[0.014-0.03] unit decrease	Illumina [2013566] (imputed)	N
2173	chr2	208255517	208255518	rs17203016	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q33.3	NR	rs17203016-A	NR	1E-9		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2173	chr2	208255517	208255518	rs17203016	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q33.3	CREB1	rs17203016-G	0.197	8E-8	(EA)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2173	chr2	208255517	208255518	rs17203016	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q33.3	CREB1	rs17203016-G	0.197	6E-6	(EA, men)	0.023	[0.013-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2173	chr2	208255517	208255518	rs17203016	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q33.3	CREB1	rs17203016-G	0.195	3E-8		0.021	[0.014-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2173	chr2	208263278	208263279	rs11692326	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q33.3	NA	rs11692326-T	0.2302	2E-14		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
2173	chr2	208263278	208263279	rs11692326	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q33.3	NA	rs11692326-T	0.2302	2E-14		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
2173	chr2	208263278	208263279	rs11692326	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q33.3	MIR1302-4, CREB1	rs11692326-T	0.24	3E-10		0.018	[0.012-0.024] unit increase	Illumina [6108953] (imputed)	N
2173	chr2	208263278	208263279	rs11692326	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q33.3	NR	rs11692326-T	0.225504677355763	4E-9		0.018731855	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2173	chr2	208269256	208269257	rs6435378	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q33.3	Intergenic	rs6435378-T	0.4295	4E-8		0.0108	[0.0069-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2174	chr2	208307760	208307761	rs10172070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q33.3		rs10172070-T	NR	2E-10		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2174	chr2	208320247	208320248	rs111556242	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2q33.3	AC007879.5	rs111556242-T	0.1451	7E-7		0.0834	[0.05-0.116] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2174	chr2	208330429	208330430	rs10932194	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q33.3	NR	rs10932194-G	NR	4E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
2174	chr2	208351130	208351131	rs141892937	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q33.3	NR	rs141892937-C		5E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
2174	chr2	208359506	208359507	rs13027546	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q33.3	CREB1	rs13027546-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
2174	chr2	208369212	208369213	rs13010104	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q33.3	ENSG00000223725	rs13010104-?	NR	9E-9		0.014770379	[0.0097-0.0198] unit decrease	NR [7306098]	N
2174	chr2	208372995	208372996	rs2360969	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	2q33.3	CREB1	rs2360969-T	0.413	1E-6	(BSA-b)	0.21	[NR] unit decrease	Illumina [944565] (imputed)	N
2174	chr2	208402749	208402750	rs4675682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q33.3	NR	rs4675682-T	0.539819	9E-16		0.00859051	[0.0063-0.0108] unit increase	Affymetrix [16582621] (imputed)	N
2174	chr2	208402749	208402750	rs4675682	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q33.3	NR	rs4675682-T	0.539819	3E-15		0.00894896	[0.0065-0.0114] unit increase	Affymetrix [16582614] (imputed)	N
2175	chr2	208405891	208405892	rs11883511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q33.3	CREB1	rs11883511-A	0.329946	9E-10		0.014353079	[0.0098-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
2175	chr2	208405891	208405892	rs11883511	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q33.3	NR	rs11883511-A	0.332254	8E-12				Affymetrix, Illumina [20825802] (imputed)	N
2175	chr2	208408747	208408748	rs113889746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q33.3		rs113889746-G	NR	7E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2175	chr2	208409338	208409339	rs2360970	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q33.3	CREB1	rs2360970-G		2E-8		0.215	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2175	chr2	208409338	208409339	rs2360970	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q33.3	CREB1	rs2360970-G		1E-7		0.124	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2175	chr2	208410266	208410267	rs2551641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2q33.3	NR	rs2551641-C	0.18857599999999997	7E-9		0.0215672	[0.014-0.029] unit increase	Affymetrix [16577313] (imputed)	N
2175	chr2	208429350	208429351	rs6740584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q33.3		rs6740584-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2175	chr2	208477851	208477852	rs2551949	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q33.3	NR	rs2551949-A	NR	2E-14		0.0251	[0.019-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2175	chr2	208489100	208489101	rs4234080	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q33.3	FAM119A	rs4234080-?		2E-7				Illumina [859311]	N
2175	chr2	208494075	208494076	rs35752817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q33.3		rs35752817-T	NR	6E-9		0.0113	[0.0076-0.015] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2175	chr2	208494233	208494234	rs2952768	23183491	Nishizawa D	2012-11-27	Mol Psychiatry	Genome-wide association study identifies a potent locus associated with human opioid sensitivity.	Opioid sensitivity	118 Japanese ancestry individuals	235 Japanese ancestry individuals	2q33.3	METTL21A, FAM119A	rs2952768-C	NR	8E-7		0.2932	unit increase	Illumina [295036]	N
2175	chr2	208507806	208507807	rs4675690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q33.3		rs4675690-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2175	chr2	208509471	208509471	rs57402142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q33.3		rs57402142-GGAAAAAAAA	NR	1E-10		0.0129	[0.009-0.0168] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2175	chr2	208509471	208509471	rs57402142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q33.3		rs57402142-GGAAAAAAAA	NR	5E-13		0.0146	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2175	chr2	208512381	208512382	rs57591036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q33.3		rs57591036-A	NR	3E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2175	chr2	208512381	208512382	rs57591036	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q33.3	METTL21A	rs57591036-A	0.3041	1E-10		0.2358	[0.16-0.31] mmHg increase	Affymetrix [NR] (imputed)	N
2175	chr2	208518316	208518317	rs2551980	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q33.3	METTL21A	rs2551980-A	0.183209	1E-9		0.0150704	[0.01-0.02] unit increase	Affymetrix [NR] (imputed)	N
2175	chr2	208521511	208521512	rs3845811	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q33.3	METTL21A, CCNYL1	rs3845811-G	0.429	9E-11		0.284	[0.2-0.37] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2175	chr2	208521511	208521512	rs3845811	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q33.3	METTL21A, CCNYL1	rs3845811-G	0.429	1E-7	(EA, initial)	0.417	[0.26-0.57] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2175	chr2	208526139	208526140	rs55780018	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	2q33.3	METTL21A, AC079767.3	rs55780018-T	0.54	6E-16		0.391	[0.29-0.49] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2176	chr2	208596046	208596047	rs143928220	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	2q33.3	CCNYL1	rs143928220-C	0.9928	5E-6		0.3707	[0.21-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2176	chr2	208608638	208608639	rs10172309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q33.3		rs10172309-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2176	chr2	208632816	208632817	rs35994626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q33.3	FZD5	rs35994626-A	0.076249	4E-11		0.027328083	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2176	chr2	208632816	208632817	rs35994626	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q33.3	FZD5	rs35994626-A	0.076251	1E-9		0.025047464	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2176	chr2	208632816	208632817	rs35994626	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q33.3	NR	rs35994626-A	0.07457	4E-10		0.022325	[0.015-0.029] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2177	chr2	208684340	208684341	rs13034375	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q33.3		rs13034375-G	0.22	2E-16		8.22	z score increase	Affymetrix [9061022] (imputed)	N
2177	chr2	208691291	208691292	rs11679380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q33.3		rs11679380-T	NR	1E-11		0.0099	[0.007-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2177	chr2	208691291	208691292	rs11679380	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q33.3	NR	rs11679380-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2177	chr2	208711010	208711011	rs113537648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Endometriosis	4,511 European ancestry cases, 227,260 European ancestry controls, 1,786 East Asian ancestry cases, 80,975 East Asian ancestry controls	NA	2q33.3		rs113537648-A	NR	3E-8		9.7195	[6.27-13.17] unit increase	Affymetrix, Illumina [25734875] (imputed)	N
2177	chr2	208744553	208744554	rs17537246	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q33.3	PLEKHM3	rs17537246-T	0.939601	9E-15		0.029435	[0.022-0.037] unit decrease	NR [13737936] (imputed)	N
2177	chr2	208744553	208744554	rs17537246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q33.3		rs17537246-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2177	chr2	208744553	208744554	rs17537246	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q33.3		rs17537246-?	NR	4E-10		0.0281039	[0.02-0.037] unit decrease	Affymetrix [20259828] (imputed)	N
2177	chr2	208756351	208756352	rs11896555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q33.3		rs11896555-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2177	chr2	208761101	208761102	rs1471528	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q33.3	NR	rs1471528-A	0.3742	2E-9				NR [9056863] (imputed)	N
2177	chr2	208773859	208773860	rs873779	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q33.3	NR	rs873779-C	0.371709	2E-9		0.0164017	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
2177	chr2	208788751	208788752	rs9749877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q33.3		rs9749877-T	0.369747	5E-10		0.0250016	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
2178	chr2	208834476	208834477	rs11679492	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	2q33.3	PLEKHM3	rs11679492-?	NR	1E-8		0.0492	NR % increase	Affymetrix [9390170] (imputed)	N
2178	chr2	208870016	208870017	rs34329895	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q33.3	NR	rs34329895-G	0.6026	3E-9		0.0279	[0.019-0.037] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2178	chr2	208870016	208870017	rs34329895	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q33.3	NR	rs34329895-G	0.5376	1E-10		0.0255	[0.018-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2178	chr2	208906214	208906215	rs34354040	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q33.3	Intergenic	rs34354040-A	0.7275	3E-9	(MTAG)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2178	chr2	208908374	208908375	rs7609428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q33.3	Intergenic	rs7609428-A	0.27	3E-8	(MTAG)	0.0103	[0.0066-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2178	chr2	208909181	208909182	rs6723557	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q33.3	Intergenic	rs6723557-T	0.2817	1E-9	(MTAG)	0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2179	chr2	208941003	208941004	rs7422655	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	2q33.3	CRYGD, PLEKHM3	rs7422655-C		3E-12		0.0068	[0.0048-0.0088] unit increase	Affymetrix [13304133] (imputed)	N
2179	chr2	208961027	208961028	rs12611599	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	2q33.3	NR	rs12611599-?	NR	8E-9			[NR]	NR [1665663]	N
2179	chr2	208992770	208992771	rs62192855	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q33.3	NR	rs62192855-G	NR	5E-6	(GEE model)	0.70881	[0.41-1.01] unit decrease	NR [NR] (imputed)	N
2179	chr2	208994044	208994045	rs2242073	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	2q33.3	CRYGC	rs2242073-?	NR	8E-6				Affymetrix [504219]	N
2179	chr2	209048054	209048059	rs66871326	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (grade 3 tumor)	22,737 European ancestry individuals	NA	2q33.3		rs66871326-?	NR	2E-7		0.85	[0.8-0.9]	NR [10000000] (imputed)	N
2179	chr2	209051585	209051586	rs7572263	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	2q33.3	IDH1	rs7572263-?	NR	3E-8		0.58	[0.47-0.70]	Illumina [NR] (imputed)	N
2179	chr2	209051585	209051586	rs7572263	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	2q33.3	IDH1	rs7572263-A	0.756	2E-10		1.2	1.13-1.26	Illumina [at least 6769856] (imputed)	N
2179	chr2	209051585	209051586	rs7572263	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	2q33.3	IDH1	rs7572263-A	0.756	3E-6		1.11	1.06-1.15	Illumina [at least 6887412] (imputed)	N
2179	chr2	209052990	209052991	rs80351950	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	2q33.3	C2orf80	rs80351950-?	NR	7E-9		5.79	NR z score decrease	Illumina [NR] (imputed)	N
2180	chr2	209075956	209075957	rs6722000	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	2q34	C2orf80, IDH1	rs6722000-G	0.2	5E-6		0.07	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
2180	chr2	209186121	209186122	rs4673397	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	2q34	PIKFYVE	rs4673397-?	NR	3E-6		0.331	[0.19-0.47] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2181	chr2	209198626	209198627	rs186885683	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q34	PIKFYVE	rs186885683-A	0.996	3E-6		0.525	NR unit increase	Illumina [NR] (imputed)	N
2181	chr2	209241141	209241142	rs535433127	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q34		rs535433127-C	0.0014512	6E-6		0.39743	[0.23-0.57] unit decrease	Affymetrix [15580782] (imputed)	N
2181	chr2	209249573	209249574	rs16841143	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Affective disorder and suicide attempts	4,302 European ancestry cases, 13,294 European ancestry population controls	NA	2q34		rs16841143-A	NR	4E-7		1.2309	[1.07-1.39]	Illumina [11601089] (imputed)	N
2181	chr2	209253878	209253879	rs78907274	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	2q34	PTH2R	rs78907274-A	NR	9E-6		33.5591	[18.75-48.37] unit decrease	Illumina [6995140] (imputed)	N
2181	chr2	209262438	209262439	rs115357300	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs115357300-G	0.989515	2E-8		0.110305	[0.072-0.149] unit decrease	NR [11722792] (imputed)	N
2182	chr2	209374933	209374934	rs1429891	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	2q34	PTH2R	rs1429891-?		1E-8				Affymetrix, Illumina [2374420] (imputed)	N
2182	chr2	209374933	209374934	rs1429891	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	2q34	NR	rs1429891-?		5E-9		0.08	[0.06-0.1] unit increase	Affymetrix, Illumina [2374420] (imputed)	N
2182	chr2	209431918	209431919	rs10210510	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	2q34	intergenic	rs10210510-?	NR	2E-6		0.0295	[0.017-0.042] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2182	chr2	209449527	209449528	rs6729895	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q34	NR	rs6729895-?	NR	1E-13				Affymetrix [NR]	N
2183	chr2	209455765	209455766	rs6722486	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q34	PTH2R	rs6722486-?		3E-6				Illumina [859311]	N
2183	chr2	209510088	209510089	rs10165384	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs10165384-A	0.983046	4E-12		0.105252	[0.076-0.135] unit decrease	NR [11722792] (imputed)	N
2183	chr2	209517104	209517105	rs77202885	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2q34	NR	rs77202885-A	0.932	3E-6		0.031857643	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
2183	chr2	209578599	209578600	rs13383928	22637743	Wei S	2012-05-27	Carcinogenesis	Genome-wide gene-environment interaction analysis for asbestos exposure in lung cancer susceptibility.	Lung cancer (asbestos exposure interaction)	1,154 European ancestry cases, 1,137 European ancestry controls	NA	2q34	PTHR2	rs13383928-C	0.04	2E-6				Illumina [307944]	N
2184	chr2	209637597	209637598	rs16841741	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q34		rs16841741-?	NR	5E-15				NR [~ 8900000] (imputed)	N
2185	chr2	209753094	209753095	rs2364693	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	2q34		rs2364693-C	0.13	7E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
2186	chr2	209869613	209869614	rs185444730	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs185444730-G	0.993656	2E-11		0.177981	[0.13-0.23] unit decrease	NR [11722792] (imputed)	N
2186	chr2	209932704	209932705	rs116695863	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs116695863-T	0.986861	2E-12		0.125337	[0.091-0.16] unit increase	NR [11722792] (imputed)	N
2187	chr2	209978613	209978614	rs111960908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs111960908-A	0.982449	2E-9		0.0893671	[0.06-0.119] unit increase	NR [11722792] (imputed)	N
2187	chr2	209982034	209982035	rs2119036	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	PTH2R	rs2119036-?	NR	4E-6	(PC 38:3)	0.1683444	[0.097-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
2187	chr2	209998433	209998434	rs528951785	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs528951785-C	0.983137	4E-11		0.107536	[0.076-0.139] unit increase	NR [11722792] (imputed)	N
2187	chr2	209999925	209999926	rs1439734	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	C2orf21	rs1439734-?	NR	2E-6	(TAG 52:5)	0.19803876	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2187	chr2	210013526	210013527	rs6740556	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	C2orf21	rs6740556-?	NR	5E-6	(TAG 52:4)	0.17641959	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2187	chr2	210033758	210033759	rs138802801	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	2q34	NR	rs138802801-C	0.006419	9E-8		0.9963	[0.63-1.36] unit decrease	Illumina [10677593] (imputed)	N
2187	chr2	210041386	210041387	rs79844775	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q34	NR	rs79844775-C	NR	9E-6		1.2048193	[NR]	Illumina [7158791] (imputed)	N
2187	chr2	210078567	210078568	rs114339247	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs114339247-G	0.984001	3E-8		0.0893375	[0.058-0.121] unit increase	NR [11722792] (imputed)	N
2187	chr2	210082743	210082744	rs148805075	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs148805075-A	0.990355	8E-24		0.213409	[0.17-0.25] unit decrease	NR [11722792] (imputed)	N
2188	chr2	210108858	210108859	rs6743594	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	2q34	MAP2	rs6743594-A	0.2993	9E-9		0.012191803	[0.008-0.0163] unit increase	Illumina [9339358] (imputed)	N
2188	chr2	210123031	210123032	rs12478665	25625606	Mather KA	2015-01-27	PLoS One	Investigating the genetics of hippocampal volume in older adults without dementia.	Hippocampal volume	498 European ancestry older adult individuals	NA	2q34	intergenic	rs12478665-T		8E-6		112.18	[63.02-161.34] unit increase	Affymetrix, Illumina [at least 646791] (imputed)	N
2188	chr2	210156849	210156850	rs16842765	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q34	MAP2	rs16842765-G	0.681	8E-6		1.054641		NR [9372253] (imputed)	N
2188	chr2	210174857	210174858	rs139109203	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs139109203-G	0.994171	1E-23		0.273993	[0.22-0.33] unit decrease	NR [11722792] (imputed)	N
2188	chr2	210196617	210196618	rs72989928	33662382	Rogne T	2021-03-01	J Invest Dermatol	Genome-Wide Association Study Identifies LINC01184/SLC12A2 As Risk Locus for Skin and Soft Tissue Infections.	Skin and soft tissue infections	6,107 European ancestry cases and 399,239 European ancestry controls	1,657 European ancestry cases and 67,522 European ancestry controls	2q34	MAP2	rs72989928-G	0.017	2E-6		0.72	[0.63-0.83]	Affymetrix, Illumina [9211777] (imputed)	N
2188	chr2	210217097	210217098	rs148598141	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	2q34	NR	rs148598141-G	0.006881	3E-6		0.8378	[0.49-1.19] unit decrease	Illumina [10677593] (imputed)	N
2189	chr2	210239871	210239871	rs566198131	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q34		rs566198131-CA	0.049432	2E-6		0.074056	[0.043-0.105] unit decrease	Affymetrix [15580782] (imputed)	N
2189	chr2	210246063	210246064	rs13017199	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (left-handed vs. right-handed)	38,322 European ancestry left-handed individuals, 356,567 European ancestry right-handed individuals	NA	2q34	MAP2	rs13017199-G	0.368	3E-8		1.04	[1.03-1.06]	NR [~ 11000000] (imputed)	N
2189	chr2	210246063	210246064	rs13017199	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (Left-handed vs. non-left-handed)	38,322 European ancestry left-handed individuals, 362,866 European ancestry right-handed individuals	NA	2q34	MAP2	rs13017199-?	NR	5E-8				NR [~ 11000000] (imputed)	N
2189	chr2	210260216	210260218	rs142367408	30980028	de Kovel CGF	2019-04-12	Sci Rep	The molecular genetics of hand preference revisited.	Handedness (Left-handed vs. non-left-handed)	31,856 British ancestry cases, 299,181 British ancestry controls	NA	2q34	MAP2	rs142367408-?	NR	4E-8				Affymetrix [~ 15000000] (imputed)	N
2189	chr2	210275708	210275709	rs1080278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q34		rs1080278-?	NR	1E-19				NR [~ 8900000] (imputed)	N
2189	chr2	210295473	210295474	rs9967799	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q34	MAP2	rs9967799-A	0.921	3E-10		0.0138	[0.0095-0.0181] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
2189	chr2	210300730	210300731	rs62213410	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	2q34	MAP2	rs62213410-A	0.7107	2E-30		0.95643085	[NR]	Illumina [12493444] (imputed)	N
2190	chr2	210377844	210377845	rs10173260	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	2q34	NR	rs10173260-C	NR	2E-6		0.618	unit increase	Affymetrix [14661600] (imputed)	N
2190	chr2	210380151	210380152	rs62213452	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q34	NR	rs62213452-T	0.2788	2E-8		1.038	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2190	chr2	210397900	210397901	rs190457931	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs190457931-G	0.997599	2E-8		0.231208	[0.15-0.31] unit decrease	NR [11722792] (imputed)	N
2190	chr2	210414654	210414655	rs149399489	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs149399489-G	0.990491	2E-12		0.14538	[0.1-0.19] unit decrease	NR [11722792] (imputed)	N
2190	chr2	210421263	210421264	rs116799967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q34		rs116799967-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2190	chr2	210466695	210466696	rs183402228	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q34	MAP2	rs183402228-T	0.9948	6E-7		0.2942	[0.18-0.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2190	chr2	210468639	210468640	rs12619473	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q34		rs12619473-G	0.05	3E-14		7.6	z score increase	Affymetrix [9061022] (imputed)	N
2190	chr2	210471492	210471493	rs137953979	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q34	NR	rs137953979-T	0.03833	7E-9	(AHNAK)	0.07499	NR unit increase	Illumina [1671387] (imputed)	N
2190	chr2	210479986	210479987	rs140729377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs140729377-C	0.989445	2E-22		0.191679	[0.15-0.23] unit decrease	NR [11722792] (imputed)	N
2190	chr2	210481049	210481050	rs752233543	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q34	MAP2	rs752233543-T	0.0023	8E-6		0.4478	[0.25-0.64] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2190	chr2	210487116	210487117	rs72997685	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs72997685-T	0.945459	6E-16		0.068978	[0.052-0.086] unit decrease	NR [11722792] (imputed)	N
2191	chr2	210516481	210516482	rs145006403	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs145006403-G	0.990744	1E-22		0.202649	[0.16-0.24] unit decrease	NR [11722792] (imputed)	N
2191	chr2	210516702	210516703	rs185429841	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs185429841-C	0.998863	2E-13		0.431383	[0.32-0.55] unit decrease	NR [11722792] (imputed)	N
2191	chr2	210555775	210555776	rs3768812	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q34	MAP2	rs3768812-?		4E-8				NR [7428630] (imputed)	N
2191	chr2	210571011	210571012	rs2191910	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q34		rs2191910-T	0.13	8E-14		7.48	z score increase	Affymetrix [9061022] (imputed)	N
2191	chr2	210571011	210571012	rs2191910	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q34	NR	rs2191910-T	0.1023	5E-13				NR [9056863] (imputed)	N
2191	chr2	210615597	210615598	rs368536282	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	2q34	MAP2	rs368536282-T	0.03	1E-10				NR [9312144] (imputed)	N
2191	chr2	210629079	210629079	rs149862866	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	2q34		rs149862866-?	NR	4E-6		1.6379544	[0.95-2.33] unit increase	Illumina [9901720] (imputed)	N
2192	chr2	210663696	210663697	rs56810761	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	2q34	UNC80	rs56810761-T	0.269822	1E-6		0.027455	[0.016-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
2192	chr2	210705347	210705348	rs10178675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs10178675-G	NR	7E-10		0.0223	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
2192	chr2	210705347	210705348	rs10178675	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs10178675-G	NR	6E-10		0.0224	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2192	chr2	210745914	210745915	rs141705179	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LANCL1	5,360 Icelandic ancestry individuals	NA	2q34		rs141705179-A	0.01291	9E-28		0.897555	[0.74-1.06] unit decrease	Illumina [7506463] (imputed)	N
2193	chr2	210779373	210779373	rs527974282	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety x maternal smoking during pregnancy interaction	5,584 cases, 9,801 controls	NA	2q34	UNC80	rs527974282-?	NR	9E-9	(Additive model)			Affymetrix [NR] (imputed)	N
2193	chr2	210779373	210779373	rs527974282	34118634	Chu X	2021-05-27	J Psychiatr Res	Maternal smoking during pregnancy and risks to depression and anxiety in offspring: An observational study and genome-wide gene-environment interaction analysis in UK biobank cohort.	Anxiety	5,584 cases, 9,801 controls	NA	2q34	UNC80	rs527974282-?	NR	3E-7	(Additive model)			Affymetrix [NR] (imputed)	N
2193	chr2	210851633	210851634	rs1861072	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	NR	rs1861072-T	0.5906	3E-12	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2193	chr2	210851633	210851634	rs1861072	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q34		rs1861072-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2193	chr2	210854475	210854476	rs17818393	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q34	UNC80	rs17818393-A	0.4846	3E-8		0.0017	[0.0011-0.0023] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2193	chr2	210874245	210874246	rs3738934	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	ACADL	rs3738934-T	0.62	1E-134	(X-13431--nonanoylcarnitine)	0.106	[0.098-0.114] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2193	chr2	210880892	210880893	rs7570090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q34		rs7570090-?	NR	6E-10				NR [~ 8900000] (imputed)	N
2193	chr2	210880892	210880893	rs7570090	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q34	C2orf67, RPE	rs7570090-?	NR	2E-24	(X-13431)	0.08477	[NR] unit increase	Affymetrix [655658]	N
2193	chr2	210887733	210887734	rs117674897	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	2q34	KANSL1L	rs117674897-?		2E-16		6.1	[3.9-9.7]	Illumina [NR] (imputed)	N
2194	chr2	210914860	210914861	rs116598794	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs116598794-C	0.995408	5E-11		0.18831	[0.13-0.24] unit increase	NR [11722792] (imputed)	N
2194	chr2	210944533	210944534	rs186291852	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q34		rs186291852-T	NR	5E-6		3.7764	[2.19-5.36] unit increase	Illumina [NR] (imputed)	N
2195	chr2	211050525	211050526	rs263686	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	2q34		rs263686-?	NR	3E-10				Affymetrix [NR] (imputed)	N
2195	chr2	211060049	211060050	rs2286963	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2q34	ACADL	rs2286963-G	0.36	7E-132	(glycine conjugate of C9H16O2, X-12459, X-13431)	0.019	[0.017-0.021] unit increase	Illumina [7750367] (imputed)	N
2195	chr2	211060049	211060050	rs2286963	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	ACADL	rs2286963-G	0.36	4E-75	(X - 13431)	0.637	[0.57-0.71] unit increase	Illumina [7750367] (imputed)	N
2195	chr2	211060049	211060050	rs2286963	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	ACADL	rs2286963-G	0.36	4E-181	(glycine conjugate of C9H16O2)	1.54	[1.43-1.65] unit increase	Illumina [7750367] (imputed)	N
2195	chr2	211060049	211060050	rs2286963	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Acylcarnitine levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	2q34	CPS1, ACADL	rs2286963-T	0.6338	3E-118	(Nonaylcarnitine)	0.2057	[0.19-0.22] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
2195	chr2	211060049	211060050	rs2286963	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q34	ACADL, C2orf67, RPE	rs2286963-?	NR	3E-33	(X-13431)	0.09672	[NR] unit increase	Affymetrix [655658]	N
2195	chr2	211060049	211060050	rs2286963	20037589	Illig T	2009-12-27	Nat Genet	A genome-wide perspective of genetic variation in human metabolism.	Metabolite levels	1,029 European ancestry individuals	1,202 European ancestry individuals	2q34	ACADL	rs2286963-T	NR	3E-60	(C9/C10:2)	0.219	[NR] unit increase	Affymetrix [517480]	N
2195	chr2	211074908	211074909	rs3764913	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	2q34	ACADL	rs3764913-C	NR	1E-35	(Nonanoylcarnitine)	0.457998	[0.39-0.53] unit increase	Illumina [up to 9281895] (imputed)	N
2195	chr2	211074908	211074909	rs3764913	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	2q34	ACADL	rs3764913-T	NR	4E-29	(2,6 dimethylheptanoyl carnitine)			Affymetrix [333722]	N
2195	chr2	211132414	211132415	rs1509569	24586186	Rueedi R	2014-02-20	PLoS Genet	Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links.	Urinary metabolites (H-NMR features)	835 European ancestry individuals	601 Brazilian individuals	2q34	ACADL	rs1509569-A	0.44	3E-18	(0.8475, Unknown)	0.32	[NR] unit increase	Illumina [713870] (imputed)	N
2196	chr2	211161153	211161154	rs6735154	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q34	MYL1	rs6735154-?	NR	9E-19	(X-13431)	0.07136	[NR] unit decrease	Affymetrix [655658]	N
2196	chr2	211253238	211253239	rs79347628	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs79347628-G	0.98887	4E-8		0.101743	[0.065-0.138] unit increase	NR [11722792] (imputed)	N
2196	chr2	211285781	211285782	rs62202111	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	NR	rs62202111-C	0.0235	6E-10	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2196	chr2	211286895	211286896	rs79675564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs79675564-A	NR	2E-12		0.0314	[0.023-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
2196	chr2	211286895	211286896	rs79675564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs79675564-A	NR	1E-12		0.0318	[0.023-0.041] unit increase	Affymetrix [9000000] (imputed)	N
2196	chr2	211286895	211286896	rs79675564	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q34	LANCL1	rs79675564-C	0.92234	3E-9		0.0150946	[0.01-0.02] unit decrease	Affymetrix [12370749]	N
2196	chr2	211287089	211287090	rs56398195	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q34		rs56398195-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2197	chr2	211292581	211292581	rs754778318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2q34		rs754778318-TG	0.734738	9E-9		0.0243612	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2197	chr2	211292581	211292581	rs754778318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2q34		rs754778318-TG	0.734738	8E-9		0.0245409	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2197	chr2	211292581	211292581	rs754778318	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	2q34		rs754778318-TG	0.734738	3E-8		0.0230581	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2197	chr2	211311313	211311314	rs4673528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q34	NR	rs4673528-C	0.556465	4E-8		0.00548871	[0.0032-0.0078] unit increase	Affymetrix [16582621] (imputed)	N
2197	chr2	211311313	211311314	rs4673528	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q34	NR	rs4673528-C	0.556465	3E-7		0.00568815	[0.0033-0.0081] unit increase	Affymetrix [16582614] (imputed)	N
2197	chr2	211348023	211348024	rs149882261	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	2q34		rs149882261-T	NR	4E-6		3.09		Illumina [7574753] (imputed)	N
2197	chr2	211362948	211362949	rs187097936	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q34	LANCL1	rs187097936-C	0.98546875	4E-14	(LANCL1, 13986_6_3)	0.78127056	[0.58-0.98] unit increase	Illumina [> 1000000] (imputed)	N
2197	chr2	211386483	211386484	rs1509820	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	NR	rs1509820-A	0.53	2E-52	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2197	chr2	211386663	211386664	rs6752042	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	LANCL1	rs6752042-?	NR	3E-8	(quinolinic acid)	0.40611112	[0.26-0.55] unit increase	Affymetrix [at least 2500000] (imputed)	N
2197	chr2	211389778	211389779	rs148372684	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs148372684-G	0.992861	2E-8		0.132688	[0.086-0.179] unit decrease	NR [11722792] (imputed)	N
2197	chr2	211394186	211394187	rs6744531	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q34	NR	rs6744531-T	0.0122	2E-8	(ACSM2B)	1.595	NR unit increase	Illumina [1671387] (imputed)	N
2197	chr2	211418889	211418890	rs4673538	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	2q34		rs4673538-C	0.629674	2E-8		0.0240233	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211437386	211437387	rs13013076	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs13013076-C	0.922077	1E-23		0.0723681	[0.058-0.087] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211441494	211441495	rs147908012	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs147908012-A	0.993982	7E-9		0.150757	[0.1-0.202] unit increase	NR [11722792] (imputed)	N
2198	chr2	211461879	211461880	rs7598448	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q34		rs7598448-T	0.45	5E-14		7.54	z score increase	Affymetrix [9061022] (imputed)	N
2198	chr2	211461879	211461880	rs7598448	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q34		rs7598448-T	0.45	2E-8		5.58	z score increase	Affymetrix [9061022] (imputed)	N
2198	chr2	211461879	211461880	rs7598448	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q34	NR	rs7598448-T	0.4567	6E-9				NR [9056863] (imputed)	N
2198	chr2	211495586	211495587	rs12468557	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in asthmatics	1,881 European ancestry children, 810 children, 2,643 European ancestry adult individuals, 817 adult individuals	979 European ancestry children, 921 Hispanic children, 120 children	2q34	CPS1	rs12468557-T	0.38	9E-6	(adult)			Illumina [up to 536451]	N
2198	chr2	211510527	211510528	rs10469763	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	2q34		rs10469763-T	0.549489	3E-8		0.0220162	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	2E-9		0.024611	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	2E-11		0.0289698	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	2E-8		0.0249411	[0.016-0.034] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	2q34		rs1047891-C	0.685127	3E-56		0.0702984	[0.062-0.079] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	6E-9		0.0231158	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs1047891-C	0.685044	1E-3580		0.535734	[0.53-0.54] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	1E-8		0.0231807	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q34		rs1047891-C	0.684664	1E-30		0.043873	[0.036-0.051] unit decrease	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	4E-10		0.0255897	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	4E-9		0.0246635	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	2q34		rs1047891-C	0.684999	7E-21		0.0408009	[0.032-0.049] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	5E-8		0.0235871	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	2E-11		0.0275168	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	2E-9		0.0241019	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	1E-9		0.0271628	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	7E-10		0.0265993	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	6E-11		0.0267658	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2q34		rs1047891-C	0.685016	3E-9		0.0242454	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	2q34		rs1047891-C	0.685009	3E-10		0.0276492	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHMT2	5,367 Icelandic ancestry individuals	NA	2q34		rs1047891-A	0.2664	1E-16		0.179661	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	2E-12		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	7E-14		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	5E-24		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	3E-9		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	2E-41		0.0271	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	2E-22		0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	1E-103		0.0402	[0.036-0.044] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q34		rs1047891-A	0.151196	3E-13		0.0300479	[0.022-0.038] unit increase	Illumina [13478778] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	4E-9		0.0134	[0.0089-0.0179] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	7E-47		0.0317	[0.027-0.036] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	2E-13		0.0176	[0.013-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	7E-29		0.0255	[0.021-0.03] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	1E-27		0.0249	[0.02-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2q34		rs1047891-A	0.152168	4E-9		0.0308184	[0.021-0.041] unit increase	Illumina [13476299] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	3E-15		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	9E-15		0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q34		rs1047891-A	NR	2E-47		0.0318	[0.027-0.036] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	2q34		rs1047891-A	0.151161	1E-19		0.0444305	[0.035-0.054] unit increase	Illumina [13478866] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	2q34		rs1047891-A	0.325605	9E-14		2.9896445	[2.2-3.78] unit decrease	NR [NR]	N
2198	chr2	211540506	211540507	rs1047891	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q34		rs1047891-C	0.684	2E-26				Affymetrix [10369434] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	2q34		rs1047891-A	0.6865	2E-7		0.0565	[0.035-0.078] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	2q34		rs1047891-A	0.6302	2E-6		0.0555	[0.033-0.078] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q34		rs1047891-C	0.684	1E-20		0.11	[-0.13--0.09] % decrease	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33992511	Chang X	2021-04-07	Nutr Metab Cardiovasc Dis	The association of genetically determined serum glycine with cardiovascular risk in East Asians.	Glycine levels	1,324 Chinese ancestry individuals	NA	2q34		rs1047891-A	0.174	1E-18		0.455	[0.36-0.55] unit increase	NR [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q34	CPS1	rs1047891-C	0.684315	4E-14		0.0018157	[0.0013-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		2q34	CPS1	rs1047891-C	NR	8E-31		0.018906	[0.015-0.023] nmol/l increase	NR [19000000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	2q34	CPS1	rs1047891-A	0.306	4E-20			NR	Illumina [7289516] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	2q34	CPS1	rs1047891-A	0.306	9E-21		0.56	[0.5-0.63]	Illumina [7289516] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q34	CPS1	rs1047891-A	0.32	2E-13		7.33	z-score increase	Affymetrix [4312306] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33418499	Lin BM	2021-01-06	EBioMedicine	Whole genome sequence analyses of eGFR in 23,732 people representing multiple ancestries in the NHLBI trans-omics for precision medicine (TOPMed) consortium.	Estimated glomerular filtration rate	8,459 African American individuals, 1,182 Hispanic/Latino individuals, 2,208 East Asian ancestry individuals, 11,837 European ancestry individuals, 46 Native American ancestry individuals	2,637 East Asian ancestry individuals, 6,767 Hispanic/Latino individuals, 3,031 Native American ancestry individuals	2q34		rs1047891-?	NR	4E-6		0.40622085	[0.23-0.58] ml/min/1.73 m2 decrease	NR [43622178]	N
2198	chr2	211540506	211540507	rs1047891	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q34	CPS1	rs1047891-?		4E-15		0.0368	[0.028-0.046] unit decrease	Illumina [31500000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3159	6E-31		0.0233	[0.019-0.027] unit increase	Affymetrix [18391927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	2q34	CPS1	rs1047891-A	0.316	6E-27		0.03	[0.024-0.036] unit increase	Affymetrix [18391927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	2q34	CPS1	rs1047891-A	0.316	2E-9		0.02	[0.014-0.026] unit increase	Affymetrix [18391927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	9E-116	(glycine)	0.565	[0.52-0.61] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	8E-17	(serine)	0.202	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	7E-83	(gamma-glutamylglycine)	0.473	[0.42-0.52] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	7E-25	(homoarginine)	0.245	[0.2-0.29] unit increase	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	7E-11	(isobutyrylglycine)	0.159	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	5E-22	(3b-hydroxy-5-cholenoic acid)	0.238	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	5E-20	(creatine)	0.224	[0.18-0.27] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	3E-64	(3-methylglutaconate)	0.38	[0.34-0.42] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	3E-27	(N-palmitoylglycine)	0.268	[0.22-0.32] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	2E-50	(N-acetylglycine)	0.365	[0.32-0.41] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	2E-40	(propionylglycine)	0.327	[0.28-0.38] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	2E-16	(isovalerylglycine)	0.19	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	2E-13	(betaine)	0.183	[0.13-0.23] unit increase	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	1E-42	(3-methylglutarylcarnitine (2))	0.278	[0.24-0.32] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q34	CPS1	rs1047891-C	0.690143	1E-17	(cinnamoylglycine)	0.2	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2q34	CPS1	rs1047891-C	0.690143	7E-11	(isobutyrylglycine)	0.159	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	2q34	CPS1	rs1047891-C	0.690143	2E-16	(isovalerylglycine)	0.19	[0.14-0.24] unit decrease	Illumina [13039987] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.315563	9E-16		0.019035023	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.315733	3E-11		0.0158209	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.315609	5E-12		0.016328435	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.314622	7E-34		0.029346272	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.314646	6E-37		0.03054915	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.315613	1E-28		0.0260972	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q34	CPS1	rs1047891-A	0.315621	2E-10		0.015060362	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.282512	6E-25				Affymetrix, Illumina [24649327] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.314955	2E-26		0.021105	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-C	0.684748	3E-10				Affymetrix, Illumina [22063850] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q34	NR	rs1047891-C	0.684909	2E-12		0.01428	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315093	2E-11		0.013433	[0.0095-0.0173] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.282233	7E-56				Affymetrix, Illumina [24588908] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.314247	2E-52		0.030067	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.295218	2E-20				Affymetrix, Illumina [23114412] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315122	9E-21		0.019307	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-C	0.685102	5E-44				Affymetrix, Illumina [17210439] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q34	NR	rs1047891-C	0.685527	4E-46		0.029413	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.287231	2E-47				Affymetrix, Illumina [24246363] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315107	9E-41		0.026285	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	2q34	NR	rs1047891-C	0.847108	4E-11		0.04061	[0.029-0.053] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.285097	6E-39				Affymetrix, Illumina [20825802] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.31545	5E-31		0.024019	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	2q34	NR	rs1047891-C	0.847107	3E-12		0.043015	[0.031-0.055] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs1047891-A	0.293029	2E-11				Affymetrix, Illumina [23472807] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315085	4E-14		0.015343	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q34	NR	rs1047891-A	0.331	5E-12	(GLDC)	0.9104	NR unit increase	Illumina [1671387] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2q34		rs1047891-?	NR	8E-10		0.0133984	[0.0091-0.0177] unit decrease	NR [6912294] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2q34		rs1047891-C	0.684179	1E-10		0.014	[0.01-0.018] unit decrease	NR [7250403] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q34	CPS1	rs1047891-C	0.684417	3E-20		0.0188663	[0.015-0.023] unit increase	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q34	CPS1	rs1047891-C	0.684335	5E-34		0.025611	[0.021-0.03] unit increase	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.316449	1E-11		0.014168	[0.01-0.018] unit decrease	Affymetrix [16668957] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315535	1E-29		0.00989238	[0.0081-0.0116] unit increase	Affymetrix [16582909] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q34	NR	rs1047891-A	0.315407	2E-44		0.0178731	[0.015-0.02] unit increase	Affymetrix [16585854] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q34	NR	rs1047891-A	0.315535	2E-13		0.00735289	[0.0054-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q34	NR	rs1047891-A	0.315407	1E-21		0.0141589	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	8E-30	(3-hydroxy-3-methylglutarate, 3-methylglutaconate, 3-methylglutarate, 2-methylglutarate, 3-methylglutarylcarnitine)	0.01	[0.008-0.012] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	3E-24	(hexanoylglycine, isocaproylglycine, X-16567, X-24402)	0.009	[0.007-0.011] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	2E-16	(2-methylbutyrylglycine, 3-methylcrotonylglycine, indoleacetylglutamine, indoleacetylglycine, isobutyrylglycine, isovalerylglutamine, isovalerylglycine, tigloylglycine, X-17688)	0.007	[0.005-0.009] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	9E-23	(hexanoylglycine)	0.34	[0.27-0.41] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	7E-18	(isobutyrylglycine)	0.273	[0.21-0.34] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	7E-17	(tigloylglycine)	0.223	[0.17-0.28] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	5E-26	(3-methylglutarate/2-methylglutarate)	0.335	[0.27-0.4] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	4E-14	(3-methylcrotonylglycine)	0.246	[0.18-0.31] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	4E-12	(isovalerylglycine)	0.216	[0.16-0.28] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	3E-25	(3-methylglutaconate)	0.226	[0.18-0.27] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	3E-22	(2-methylbutyrylglycine)	0.224	[0.18-0.27] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	3E-13	(X - 16567)	0.347	[0.25-0.44] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	2E-21	(3-methylglutarylcarnitine (2))	0.322	[0.26-0.39] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	1E-25	(isocaproylglycine)	0.351	[0.28-0.42] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q34	CPS1	rs1047891-A	0.33	1E-12	(X - 24402)	0.438	[0.32-0.56] unit increase	Illumina [7750367] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q34	NR	rs1047891-A	0.315318	9E-10		0.0443214	[0.03-0.059] unit increase	Affymetrix [17914406] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q34	CPS1	rs1047891-C	0.684	5E-15	(EA)	0.017	[0.013-0.021] unit increase	NR [12082474] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.1672	4E-41	(Glycine)	0.2295	[0.2-0.26] unit increase	Illumina [~ 47000000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q34	CPS1	rs1047891-A	0.2867	2E-11		0.0242	[0.017-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q34	CPS1	rs1047891-A	0.1531	1E-6	(East Asian)	0.0419	[0.025-0.059] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3107	2E-8		0.023735	[0.015-0.032] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q34	NR	rs1047891-A	0.2764	6E-11	(women)	0.0351	[0.025-0.046] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2q34	CPS1	rs1047891-A	NR	4E-18		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3148	3E-18		0.0189908	[0.015-0.023] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	2q34	CPS1	rs1047891-A	0.326	3E-33		0.655	[0.55-0.76] unit decrease	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	2q34	CPS1	rs1047891-A	0.33	3E-12		0.64	[0.46-0.82] unit decrease	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q34	CPS1	rs1047891-A	0.3123	4E-64	(EA)	0.0065	[0.0057-0.0073] unit decrease	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q34	CPS1	rs1047891-A	0.293	2E-62		0.0065	[0.0057-0.0073] unit decrease	Affymetrix [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q34	CPS1	rs1047891-A	0.2927	7E-117		0.0065	[0.0057-0.0073] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q34	CPS1	rs1047891-A	0.3123	2E-102		0.0065	[0.0057-0.0073] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.1564	1E-8		0.0057	[0.0037-0.0077] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q34	CPS1	rs1047891-A	0.29	3E-8		1.0532	[1.034-1.0728]	Affymetrix, Illumina [9585923] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.2779	1E-15		0.0068	[0.0052-0.0084] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.341987	1E-300		0.425094	[0.41-0.44] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	2q34	CPS1	rs1047891-A	0.341987	6E-189		0.322023	[0.3-0.34] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	2q34	CPS1	rs1047891-A	0.341987	1E-300		0.572425	[0.54-0.6] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q34	CPS1	rs1047891-C	0.7685	3E-42		13.619	NR z score increase	Illumina [26237160] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.304447	3E-14		0.051092	[0.039-0.063] unit increase	Illumina [24961484] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	2q34		rs1047891-A	0.3207	3E-7		0.0062	[0.0038-0.0086] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary sodium to creatinine ratio	218,450 European ancestry individuals	109,166 European ancestry individuals	2q34	CPS1	rs1047891-A	0.3151	3E-18		0.028	[0.023-0.035] unit decrease	Affymetrix [19420026] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary potassium to creatinine ratio	218,435 European ancestry individuals	109,178 European ancestry individuals	2q34	CPS1	rs1047891-A	0.3151	1E-27		0.033	[0.027-0.039] unit decrease	Affymetrix [19420026] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q34	CPS1	rs1047891-A	NR	5E-16				Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q34	CPS1	rs1047891-A	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q34	CPS1	rs1047891-A	NR	3E-16				Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q34	CPS1	rs1047891-A	NR	1E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q34	CPS1	rs1047891-A	NR	9E-10		0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q34	CPS1	rs1047891-A	NR	3E-7	(EA)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q34	CPS1	rs1047891-A	NR	4E-7		0.006136	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q34	CPS1	rs1047891-A	0.237	2E-29		0.61	[0.4-0.82] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q34		rs1047891-?	NR	2E-13				NR [~ 8900000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q34		rs1047891-?	NR	9E-13				NR [~ 8900000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q34		rs1047891-?	NR	6E-25				NR [~ 8900000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q34		rs1047891-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q34	NR	rs1047891-?	NR	4E-9	(female)	0.15189	[0.1-0.2] unit increase	Affymetrix [7794483] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q34	NR	rs1047891-?	NR	3E-7	(male)	0.19194	[0.12-0.27] unit increase	Affymetrix [7794483] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q34	NR	rs1047891-?	NR	1E-13		0.17494	[0.13-0.22] unit increase	Affymetrix [7794483] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	2q34	CPS1	rs1047891-C	0.6807000000000001	1E-14		0.2528	[0.19-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2q34	CPS1	rs1047891-C	0.683	4E-8		0.01031	[0.0066-0.014] unit increase	Affymetrix [11709857] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2q34	CPS1	rs1047891-C	0.684	2E-11		0.01205	[0.0085-0.0156] unit increase	Affymetrix [11709857] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	2q34	CPS1	rs1047891-A	NR	2E-20	(Glycine)	0.394115	[0.31-0.48] unit increase	Illumina [up to 9281895] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2q34	CPS1	rs1047891-?	NR	3E-8		0.03507	[0.023-0.047] unit increase novel	Illumina [6108953] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	2q34	CPS1	rs1047891-?	NR	5E-8		0.0346	[0.022-0.047] unit increase novel	Illumina [6108953] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	2q34	CPS1	rs1047891-?	NR	6E-18		0.049	[0.038-0.06] unit increase	Illumina [6108953] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2q34	CPS1	rs1047891-A	NR	2E-16		0.0089	[0.0069-0.0109] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3159	2E-18		0.03416632	[0.027-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3158	7E-14		0.02899955	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3168	1E-10		0.02424476	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.3168	1E-10		0.02438928	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	2q34	CPS1	rs1047891-A	0.33	1E-300	(Glycine)	0.49	[0.47-0.51] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	24651765	Williams SR	2014-03-20	PLoS Genet	Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.	Plasma homocysteine levels (post-methionine load test)	2,710 European and other ancestry individuals, 1,725 European ancestry individuals, 258 African ancestry individuals, 117 individuals	NA	2q34	CPS1	rs1047891-A	0.306	9E-13		0.191	[0.12-0.26] unit increase	Affymetrix, Illumina [up to 11000000] (imputed)	N
2198	chr2	211540506	211540507	rs1047891	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q34	CPS1	rs1047891-A	0.33	9E-10		0.027	[NR] unit decrease	NR [NR] (imputed)	N
2198	chr2	211543054	211543055	rs715	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	2q34		rs715-T	0.689197	7E-12		0.0304767	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
2198	chr2	211543054	211543055	rs715	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phenylalanine levels	115,030 European ancestry individuals	NA	2q34		rs715-T	0.689093	1E-9		0.0274353	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2198	chr2	211543054	211543055	rs715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q34		rs715-C	NR	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2198	chr2	211543054	211543055	rs715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2q34		rs715-C	0.163355	3E-9		0.0294978	[0.02-0.039] unit increase	Illumina [13476266] (imputed)	N
2198	chr2	211543054	211543055	rs715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q34		rs715-C	NR	1E-10		0.0097	[0.0068-0.0126] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2198	chr2	211543054	211543055	rs715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q34		rs715-C	0.163348671	1E-12		0.15529507	[0.11-0.2] unit decrease	Illumina [13429768] (imputed)	N
2198	chr2	211543054	211543055	rs715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q34		rs715-C	NR	3E-8		0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
2198	chr2	211543054	211543055	rs715	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q34	NR	rs715-T	0.69	1E-32		0.024	[0.02-0.028] unit increase	NR [NR]	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.310431	2E-12		0.017166961	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.310445	1E-10		0.01571681	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.311371	2E-13		0.01758778	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.311351	2E-26		0.025373457	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.311382	4E-27		0.025780147	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	CPS1	rs715-C	0.311389	7E-15		0.018593417	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs715-C	0.277165	3E-11				Affymetrix, Illumina [24332387] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs715-C	0.2861	1E-15				Affymetrix, Illumina [19872809] (imputed)	N
2198	chr2	211543054	211543055	rs715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q34	NR	rs715-C	0.311384	3E-16		0.017524	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2198	chr2	211543054	211543055	rs715	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.837	2E-6	(Japanese)	0.0273	[0.016-0.038] unit increase	Illumina [1986983] (imputed)	N
2198	chr2	211543054	211543055	rs715	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	CPS1	rs715-C	0.313	3E-1632		0.444	[0.43-0.46] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2198	chr2	211543054	211543055	rs715	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs715-T		2E-75	(Gly)	0.72	[0.64-0.8] unit increase	Illumina [1288202] (imputed)	N
2198	chr2	211543054	211543055	rs715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q34		rs715-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2198	chr2	211543054	211543055	rs715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q34		rs715-?	NR	7E-17				NR [~ 8900000] (imputed)	N
2198	chr2	211543054	211543055	rs715	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q34	NA	rs715-T	0.6953	1E-16		0.0157	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
2198	chr2	211543054	211543055	rs715	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q34	NA	rs715-T	0.6953	1E-16		0.0157	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
2198	chr2	211543054	211543055	rs715	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2q34	CPS1	rs715-?	NR	2E-12		0.03693	[0.027-0.047] unit increase novel	Illumina [6108953] (imputed)	N
2198	chr2	211543054	211543055	rs715	28250457	Scerri TS	2017-02-27	Nat Genet	Genome-wide analyses identify common variants associated with macular telangiectasia type 2.	Macular telangiectasia type 2	476 European ancestry cases, 1,733 European ancestry controls	172 European ancestry cases, 1,134 European ancestry controls	2q34	CPS1	rs715-?	0.686	1E-15		1.923077	[1.64-2.27]	Illumina [6310381] (imputed)	N
2198	chr2	211543054	211543055	rs715	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		2q34	CPS1	rs715-?	NR	9E-14		0.0092	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
2198	chr2	211543054	211543055	rs715	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		2q34	CPS1	rs715-?	NR	2E-13		0.0082	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
2198	chr2	211543054	211543055	rs715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q34	CPS1	rs715-C	0.3126	1E-9		0.02410037	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211543054	211543055	rs715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q34	CPS1	rs715-C	0.3136	4E-10		0.02420978	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211543054	211543055	rs715	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q34	CPS1	rs715-C	0.3134	3E-9		0.0230721	[0.015-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2198	chr2	211543054	211543055	rs715	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2q34	CPS1	rs715-C	NR	1E-11		0.876	[0.63-1.12] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
2198	chr2	211543054	211543055	rs715	26822151	Hartiala JA	2016-01-29	Nat Commun	Genome-wide association study and targeted metabolomics identifies sex-specific association of CPS1 with coronary artery disease.	Betaine levels in individuals undergoing cardiac evaluation	1,985 individuals	1,895 individuals	2q34	CPS1	rs715-C	0.31	1E-8		0.05	[0.032-0.068] unit decrease	Affymetrix [2421770] (imputed)	N
2198	chr2	211543054	211543055	rs715	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	2q34	CPS1	rs715-C	0.32	4E-16		0.0082	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
2198	chr2	211543054	211543055	rs715	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	2q34	CPS1	rs715-C	0.31	8E-31	(glycine/threonine)	0.1409	[NR] unit increase	Affymetrix [620456]	N
2198	chr2	211543054	211543055	rs715	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	2q34	CPS1	rs715-C	0.31	3E-25	(3.555 ppm/2.547 ppm)	0.176	[NR] unit increase	Affymetrix [620456]	N
2198	chr2	211543054	211543055	rs715	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	2q34	CPS1, ACADL	rs715-T	0.6925	3E-11	(Serine)	0.0311	[0.022-0.04] unit decrease	Affymetrix, Illumina [at least 296619] (imputed)	N
2198	chr2	211543054	211543055	rs715	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	CPS1	rs715-C	0.315	7E-6	(EA)	0.022	[0.012-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2198	chr2	211543054	211543055	rs715	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	CPS1	rs715-C	0.315	4E-6		0.022	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2198	chr2	211543054	211543055	rs715	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	2q34	CPS1	rs715-?	NR	1E-8	(Creatine)			Illumina [~ 2500000] (imputed)	N
2198	chr2	211543054	211543055	rs715	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	2q34	CPS1	rs715-?	NR	1E-32	(Glycine)			Illumina [~ 2500000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.72	7E-35	(X-08988)	0.033	[0.027-0.039] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.72	4E-16	(glutaroyl carnitine)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	7E-58	(N-acetylglycine)	0.091	[0.079-0.103] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	3E-21	(serine)	0.022	[0.018-0.026] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	2E-19	(betaine)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	2E-16	(pyroglutamine)	0.036	[0.028-0.044] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	2E-147	(glycine)	0.076	[0.07-0.082] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q34	CPS1	rs715-T	0.71	1E-24	(creatine)	0.045	[0.037-0.053] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2198	chr2	211543054	211543055	rs715	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q34	CPS1	rs715-T	0.68	2E-11	(EA)	0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
2198	chr2	211543054	211543055	rs715	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	2q34	CPS1	rs715-T	0.68	3E-50	(glycine)	0.61	[0.53-0.69] unit decrease	Affymetrix [909508] (imputed)	N
2198	chr2	211549855	211549856	rs55932961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q34		rs55932961-A	NR	2E-16		0.0847	[0.065-0.105] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
2199	chr2	211562923	211562924	rs72944180	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q34	CPS1, ERBB4	rs72944180-?	NR	5E-15		0.04048	[0.03-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
2199	chr2	211565691	211565692	rs4673546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	2q34	CPS1	rs4673546-?	NR	7E-59	(Gly)	0.1844228	NR unit increase	Illumina [609262]	N
2199	chr2	211565691	211565692	rs4673546	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	2q34	CPS1	rs4673546-?	NR	1E-48	(Gly)	0.1900547	NR unit increase	Illumina [609262]	N
2199	chr2	211565691	211565692	rs4673546	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs4673546-C	0.16	6E-71	(Gly)	0.9	[0.8-1] unit increase	Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		1E-6	(Arg)			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		9E-6	(Lys (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		9E-14	(Ser (adjusted for Pro))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		6E-11	(Thr (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		5E-8	(Thr (adjusted for Ser))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		5E-8	(Arg (adjusted for Ser))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		5E-17	(Ser (adjusted for Asn))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		4E-75	(Gly (adjusted for Pro))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		4E-61	(Gly (adjusted for Ser))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		4E-6	(Asn (adjusted for Ser))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		4E-13	(Ser (adjusted for Gln))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		3E-9	(Orn (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-9	(Gln (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-82	(Gly (adjusted for Asn))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-80	(Gly (adjusted for Gln))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-70	(Gly (adjusted for Phe))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-7	(Cit (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-13	(Ser (adjusted for Phe))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		2E-10	(Asn (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-?		1E-13	(Arg (adjusted for Gly))			Illumina [1288202] (imputed)	N
2199	chr2	211569398	211569399	rs12613336	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs12613336-T	0.15	5E-12	(Ser)	0.34	[0.24-0.44] unit increase	Illumina [1288202] (imputed)	N
2199	chr2	211569721	211569722	rs2371030	23144319	Lee Y	2012-11-08	Carcinogenesis	Prognostic implications of genetic variants in advanced non-small cell lung cancer: a genome-wide association study.	Non-small cell lung cancer	348 Korean ancestry cases	NA	2q34	CPS1	rs2371030-G	0.091	3E-6	(Additive model)			Affymetrix [271817]	N
2199	chr2	211573558	211573559	rs2193617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q34		rs2193617-A	NR	1E-14		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
2199	chr2	211581244	211581245	rs16844839	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	2q34	CPS1, ACADL	rs16844839-T	0.1995	3E-99	(Glycine)	0.1212	[0.11-0.13] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
2199	chr2	211595899	211595900	rs72933889	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q34	NR	rs72933889-T	0.1812	4E-10	(GLDC)	1.077	NR unit increase	Illumina [1671387] (imputed)	N
2199	chr2	211608378	211608379	rs4673553	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	2q34	CPS1	rs4673553-G	0.45	3E-6	(women)	0.099	[0.058-0.14] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	3E-9		0.019	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	3E-24		0.0319	[0.026-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	3E-16		0.0257	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	1E-9		0.0201	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	2E-12		0.0232	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	5E-36		0.0393	[0.033-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	1E-14		0.0243	[0.018-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	2E-38		0.0407	[0.035-0.047] unit increase	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2q34	NR	rs2216405-G	NR	3E-12		0.023	[0.017-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211616893	211616894	rs2216405	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q34	intergenic	rs2216405-?	NR	1E-15	(glycine)	0.04127	[NR] unit increase	Affymetrix [655658]	N
2199	chr2	211616893	211616894	rs2216405	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2q34	CPS1	rs2216405-G	0.177	2E-27	(glycine + 17 other traits)	0.117	[NR] unit increase	Affymetrix, Illumina [534665]	N
2199	chr2	211623968	211623969	rs35394656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q34	NR	rs35394656-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
2199	chr2	211623968	211623969	rs35394656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q34		rs35394656-?	NR	7E-13				NR [~ 8900000] (imputed)	N
2199	chr2	211643509	211643510	rs148123229	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	2q34	NR	rs148123229-C		6E-6		0.3077	[0.15-0.47] SD units increase	NR [10700000] (imputed)	N
2199	chr2	211644646	211644647	rs10172053	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	2q34	CPS1	rs10172053-T	0.8286	5E-26	(Glycine)	0.1699	[0.14-0.2] unit decrease	Illumina [~ 47000000] (imputed)	N
2199	chr2	211644646	211644647	rs10172053	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs10172053-T		2E-50	(Gly)	0.64	[0.56-0.72] unit increase	Illumina [1288202] (imputed)	N
2199	chr2	211644646	211644647	rs10172053	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	LANCL1	rs10172053-?	NR	8E-19	(glycine)	0.39763543	[0.31-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
2199	chr2	211644646	211644647	rs10172053	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	LANCL1	rs10172053-?	NR	5E-8	(creatine)	0.25138626	[0.16-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
2199	chr2	211659881	211659882	rs11901633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs11901633-C	NR	8E-12		0.0203	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2199	chr2	211659881	211659882	rs11901633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs11901633-C	NR	2E-12		0.0209	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2199	chr2	211669616	211669617	rs139488844	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs139488844-C	0.997611	4E-12		0.276858	[0.2-0.36] unit increase	NR [11722792] (imputed)	N
2199	chr2	211675194	211675195	rs547575279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs547575279-G	0.986425	1E-9		0.12172	[0.082-0.161] unit increase	NR [11722792] (imputed)	N
2199	chr2	211676024	211676025	rs72941874	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q34	NR	rs72941874-?		7E-6				Illumina [4322238] (imputed)	N
2199	chr2	211679187	211679188	rs12328194	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	2q34		rs12328194-A	0.017	5E-6		0.162	[0.093-0.231] unit increase	Illumina [6361597] (imputed)	N
2200	chr2	211682110	211682111	rs34857342	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2q34		rs34857342-?	NR	9E-7		0.372072	[0.22-0.52] unit decrease	Illumina [9842460] (imputed)	N
2200	chr2	211717694	211717695	rs12995607	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA2821 abundance in stool	5,959 Finnish ancestry individuals	NA	2q34		rs12995607-A	0.122552	3E-8		0.0816833	[0.053-0.11] unit increase	Illumina [7980478] (imputed)	N
2200	chr2	211749664	211749665	rs73082161	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	2q34	NR	rs73082161-?	NR	2E-6		0.0286	[0.017-0.04] unit decrease	Illumina [~ 7800000] (imputed)	N
2200	chr2	211750297	211750298	rs4310999	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	2q34	CPS1	rs4310999-G		1E-12	(Gly)	0.3	[0.22-0.38] unit increase	Illumina [1288202] (imputed)	N
2200	chr2	211809235	211809236	rs4410224	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q34	NR	rs4410224-?		9E-6				Illumina [4322238] (imputed)	N
2201	chr2	211826214	211826215	rs1437370	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	ERBB4	rs1437370-?	NR	8E-13	(glycine)	0.24703373	[0.18-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
2201	chr2	211840749	211840750	rs12991443	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	ERBB4	rs12991443-?	NR	5E-6	(creatine)	0.1699887	[0.097-0.243] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2201	chr2	211840827	211840828	rs12991650	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	2q34	intergenic	rs12991650-?	NR	3E-6	(Additive model)	0.41	unit decrease	Illumina [542562]	N
2201	chr2	211852271	211852272	rs79639185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs79639185-A	NR	2E-9		0.0413	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
2201	chr2	211852271	211852272	rs79639185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs79639185-A	NR	5E-10		0.0431	[0.03-0.057] unit increase	Affymetrix [9000000] (imputed)	N
2201	chr2	211853933	211853934	rs12996484	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	ERBB4	rs12996484-?	NR	3E-6	(serine)	0.16581649	[0.096-0.235] unit increase	Affymetrix [at least 2500000] (imputed)	N
2201	chr2	211856724	211856725	rs651797	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	2q34	RPS27P10	rs651797-G		7E-10	(Gly)	0.26	[0.18-0.34] unit increase	Illumina [1288202] (imputed)	N
2201	chr2	211859725	211859726	rs1657863	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	2q34	RPS27P10	rs1657863-T	0.21	3E-8	(Gly)	0.26	[0.16-0.36] unit increase	Illumina [1288202] (imputed)	N
2201	chr2	211861024	211861025	rs172769	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	ERBB4	rs172769-?	NR	6E-6	(ureidopropionic acid)	0.17918955	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2201	chr2	211863744	211863745	rs3097415	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	2q34	NR	rs3097415-A	NR	9E-6		0.02733	[0.015-0.039] unit decrease	Illumina [541614]	N
2201	chr2	211876085	211876086	rs319702	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-resistant type 2 diabetes	1,130 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2q34	LANCL1	rs319702-C	0.0689911	8E-6		0.619	[0.5 - 0.764]	Illumina [5397362] (imputed)	N
2201	chr2	211884230	211884231	rs62177991	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	NR	rs62177991-G	0.5169	7E-14	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2201	chr2	211891849	211891850	rs6715026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs6715026-C	NR	2E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2201	chr2	211891849	211891850	rs6715026	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q34	NR	rs6715026-C	NR	5E-11		0.0164	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2201	chr2	211924511	211924512	rs547975976	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs547975976-G	0.997281	6E-9		0.226963	[0.15-0.3] unit decrease	NR [11722792] (imputed)	N
2202	chr2	211969337	211969338	rs16845301	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q34	NR	rs16845301-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2202	chr2	211972466	211972467	rs178585	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	2q34	CPS1, RPS27P10	rs178585-C	0.47	4E-6		1.13	[1.07-1.19]	NR [NR]	N
2202	chr2	211988411	211988412	rs7421089	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q34	NR	rs7421089-T	NR	2E-7		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
2202	chr2	211988411	211988412	rs7421089	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q34	CPS1	rs7421089-T	0.291435432459973	4E-9		0.019202283	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2202	chr2	211988979	211988980	rs10804189	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q34	CPS1	rs10804189-A	0.291901053242334	4E-9		0.01910935	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2202	chr2	211991846	211991847	rs147025686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2q34		rs147025686-T	NR	4E-8		1.1529	[0.74-1.56] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
2202	chr2	212061884	212061885	rs56291226	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	2q34	NR	rs56291226-?	NR	8E-6		0.11462	[0.064-0.165] unit decrease	Affymetrix [9658292] (imputed)	N
2203	chr2	212098924	212098925	rs186280134	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Positive urgency	22,738 European ancestry individuals	NA	2q34	CPS1, ERBB4	rs186280134-T	0.9911	7E-7		0.258	[0.156-0.360] unit increase	Illumina [11434023] (imputed)	N
2204	chr2	212216853	212216854	rs150416243	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	2q34	NR	rs150416243-?	NR	5E-6		0.13659	[0.078-0.195] unit decrease	Affymetrix [9658292] (imputed)	N
2204	chr2	212236239	212236240	rs77593502	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs77593502-A	0.92632	2E-13		0.0554934	[0.041-0.07] unit increase	NR [11722792] (imputed)	N
2204	chr2	212258352	212258353	rs3791686	29453196	Sato Y	2018-02-16	J Med Genet	Genome-wide association study identifies ERBB4 on 2q34 as a novel locus associated with sperm motility in Japanese men.	Sperm motility	811 Japanese ancestry males	779 Japanese ancestry males	2q34	ERBB4	rs3791686-C	0.24	5E-9		4.01	[2.66-5.36] unit decrease	Illumina [3901256] (imputed)	N
2204	chr2	212258766	212258767	rs3791687	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q34	NR	rs3791687-T	0.2255	1E-10		0.019127773	[0.013-0.025] unit increase	Affymetrix [10549349] (imputed)	N
2204	chr2	212261784	212261785	rs116364052	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs116364052-G	0.98955	1E-8		0.109893	[0.072-0.148] unit decrease	NR [11722792] (imputed)	N
2204	chr2	212274446	212274447	rs3791699	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q34	ERBB4	rs3791699-A	0.3081	4E-8		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2204	chr2	212274446	212274447	rs3791699	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	2q34	ERBB4	rs3791699-A	0.458	5E-6		0.0031	[0.0017-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2204	chr2	212274936	212274937	rs3828242	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q34	NR	rs3828242-G	0.2696	6E-9		0.0252	[0.017-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2204	chr2	212278939	212278940	rs7591494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q34		rs7591494-A	NR	3E-13		0.0149	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2204	chr2	212280779	212280780	rs3791702	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q34	NR	rs3791702-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
2204	chr2	212281673	212281674	rs149521206	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q34		rs149521206-T	0.991979	7E-9		0.140595	[0.093-0.188] unit increase	NR [11722792] (imputed)	N
2204	chr2	212286120	212286121	rs3791708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q34		rs3791708-A	NR	1E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2204	chr2	212291771	212291772	rs113168128	32289280	Zhang Y	2020-04-11	Am J Obstet Gynecol	A genome-wide association study of polycystic ovary syndrome identified from electronic health records.	Polycystic ovary syndrome	1,735 European ancestry cases, 1,007 European, African American and unknown ancestry cases, 27,812 European ancestry controls, 23,626 European, African American and unknown ancestry controls	253 European ancestry cases, 2,161 European ancestry controls	2q34	ERBB4	rs113168128-A	0.021	5E-8		1.72	[1.42-2.10]	NR [at least 5648769] (imputed)	N
2204	chr2	212296093	212296094	rs6435622	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q34	NA	rs6435622-C	0.3179	4E-12		0.0127	[0.0092-0.0162] unit increase	NR [~ 27400000] (imputed)	N
2204	chr2	212302572	212302573	rs13005841	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q34	NR	rs13005841-T	0.287	2E-8		0.0285	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2204	chr2	212304840	212304841	rs16825008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q34		rs16825008-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2204	chr2	212316687	212316688	rs2371271	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2q34		rs2371271-?	NR	6E-6	(endometrioid)	1.46		Illumina [11595112] (imputed)	N
2205	chr2	212377671	212377672	rs61631854	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	2q34		rs61631854-T	NR	6E-6		1.7705	[1.02-2.52] unit increase	Illumina [NR] (imputed)	N
2205	chr2	212385919	212385920	rs115683961	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	2q34	NR	rs115683961-A	0.9383	3E-8	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
2205	chr2	212441595	212441596	rs10176315	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	2q34	NR	rs10176315-T	0.7703	9E-6		0.017711073	[0.0099-0.0255] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
2206	chr2	212560100	212560101	rs28715896	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	2q34	NR	rs28715896-G	0.43	4E-6		1.5873016	[1.39-1.78]	NR [up to 6398204] (imputed)	N
2206	chr2	212580183	212580184	rs13409739	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	2q34	NR	rs13409739-G	NR	8E-6	(random effect)	1.04	NR	NR [6904914] (imputed)	N
2206	chr2	212586203	212586204	rs4672623	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x Hispanic interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	2q34	NR	rs4672623-?	NR	9E-9				NR [6212909] (imputed)	N
2206	chr2	212590504	212590505	rs7556896	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q34	NR	rs7556896-C	0.272366	2E-8		0.03940581	[0.026-0.053] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2206	chr2	212590504	212590505	rs7556896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q34	Intergenic	rs7556896-T	0.3136	2E-14	(MTAG)	0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2206	chr2	212590504	212590505	rs7556896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q34	Intergenic	rs7556896-T	0.3136	2E-8		0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
2206	chr2	212590840	212590841	rs55897719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q34	Intergenic	rs55897719-A	0.302	5E-8	(MTAG)	0.0106	[0.0067-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2206	chr2	212592043	212592044	rs7597007	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q34	ERBB4	rs7597007-T	NR	1E-9		0.012209	[0.0083-0.0162] unit decrease	Affymetrix [18485882] (imputed)	N
2207	chr2	212599287	212599288	rs62182993	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q34	ERBB4	rs62182993-A	0.318	1E-9		0.013229568	[0.0089-0.0175] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2207	chr2	212599287	212599288	rs62182993	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q34	Intergenic	rs62182993-A	0.3108	5E-22	(MTAG)	0.0137	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2207	chr2	212599302	212599303	rs62182994	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs62182994-T	0.6894	3E-19		0.0137	[0.011-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2207	chr2	212618439	212618440	rs72948506	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	2q34	NR	rs72948506-A	0.2975	4E-8		0.024763808	[0.016-0.034] unit increase	NR [NR]	N
2207	chr2	212622817	212622818	rs7600261	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	2q34	ERBB4	rs7600261-C	0.69	9E-11		0.034	unit decrease	NR [2324712] (imputed)	N
2207	chr2	212631482	212631483	rs62183028	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q34	ERBB4	rs62183028-T	NR	1E-8		0.011371	[0.0074-0.0153] unit decrease	Affymetrix [18485882] (imputed)	N
2207	chr2	212631482	212631483	rs62183028	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q34	NR	rs62183028-?	NR	1E-6		4.875	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2207	chr2	212632451	212632452	rs62183029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q34	Intergenic	rs62183029-A	0.2963	2E-15	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2207	chr2	212634107	212634108	rs7583068	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q34	NR	rs7583068-?	NR	3E-8		0.01376	[0.0089-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
2207	chr2	212635588	212635589	rs4132462	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs4132462-T	0.299	4E-19	(conditional-joint)	0.0138	[0.011-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2207	chr2	212635588	212635589	rs4132462	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	2q34	ERBB4	rs4132462-T	NR	9E-9		0.018752951	[0.012-0.025] unit decrease	Affymetrix [NR]	N
2207	chr2	212638861	212638862	rs62183032	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q34	NR	rs62183032-?	NR	3E-8		0.01331	[0.0086-0.018] unit decrease	Affymetrix [10847151] (imputed)	N
2207	chr2	212641989	212641990	rs72948529	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	2q34	NR	rs72948529-C	0.2161	2E-7		0.0075	[0.0048-0.0102] unit increase	NR [7666894] (imputed)	N
2207	chr2	212642774	212642775	rs59779307	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q34	ERBB4	rs59779307-C	NR	2E-8		0.011327	[0.0074-0.0153] unit decrease	Affymetrix [18485882] (imputed)	N
2207	chr2	212662618	212662619	rs62184483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q34		rs62184483-?	NR	1E-16				NR [~ 8900000] (imputed)	N
2207	chr2	212670019	212670019	rs76536952	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q34	ERBB4	rs76536952-C	0.517319	7E-10		0.0130558	[0.009-0.0172] unit decrease	NR [16516521] (imputed)	N
2207	chr2	212676883	212676884	rs138218528	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q34		rs138218528-?	NR	8E-9				NR [~ 8900000] (imputed)	N
2207	chr2	212676883	212676884	rs138218528	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q34	NR	rs138218528-T	NR	1E-8		5.735	z score increase	Affymetrix [10847151] (imputed)	N
2207	chr2	212677930	212677931	rs11693031	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	2q34	ERBB4	rs11693031-A	0.3539	3E-14		0.018689008	[0.013-0.024] unit increase	NR [9417325] (imputed)	N
2207	chr2	212677930	212677931	rs11693031	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q34	ERBB4	rs11693031-G	0.3149	1E-8		0.01238727	[0.0081-0.0166] unit increase	Affymetrix [up to 18485882] (imputed)	N
2207	chr2	212677930	212677931	rs11693031	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	2q34	ERBB4	rs11693031-G	NR	2E-9		0.012051	[0.0081-0.016] unit increase	Affymetrix [18485882] (imputed)	N
2207	chr2	212677930	212677931	rs11693031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q34	NR	rs11693031-G	0.330868019910607	3E-13		0.0071214084	[0.0052-0.009] unit decrease	NR [NR]	N
2207	chr2	212677930	212677931	rs11693031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q34	NR	rs11693031-G	0.330868019910607	5E-13		0.00868146	[0.0063-0.011] unit decrease	NR [NR]	N
2207	chr2	212677930	212677931	rs11693031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q34	NR	rs11693031-G	0.330868019910607	3E-13		0.011316606	[0.0083-0.0144] unit decrease	NR [NR]	N
2207	chr2	212677930	212677931	rs11693031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q34	NR	rs11693031-G	0.330868019910607	1E-12		0.009219386	[0.0067-0.0118] unit decrease	NR [NR]	N
2207	chr2	212677930	212677931	rs11693031	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q34	NR	rs11693031-G	0.330868019910607	4E-13		0.0072173118	[0.0053-0.0092] unit decrease	NR [NR]	N
2207	chr2	212677930	212677931	rs11693031	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q34	NR	rs11693031-G	NR	5E-10		0.01573	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
2207	chr2	212680522	212680523	rs6757087	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs6757087-T	0.5755	3E-9		0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2207	chr2	212691558	212691559	rs13006489	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q34	ERBB4	rs13006489-C	0.4569	1E-9		0.012291372	[0.0083-0.0163] unit increase	Affymetrix [up to 18485882] (imputed)	N
2207	chr2	212717214	212717215	rs1439253	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2q34	ERBB4	rs1439253-A	0.421921	4E-10		6.25	z score decrease	NR [10847151] (imputed)	N
2208	chr2	212749785	212749786	rs74338595	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	2q34	ERBB4	rs74338595-?	NR	2E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
2208	chr2	212749785	212749786	rs74338595	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	2q34	ERBB4	rs74338595-T	0.710004	5E-9		0.01318363	[0.0088-0.0176] unit increase	NR [NR] (imputed)	N
2208	chr2	212749785	212749786	rs74338595	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	2q34	ERBB4	rs74338595-T	0.71	6E-9		0.0052	[0.0034-0.007] unit increase	NR [NR] (imputed)	N
2208	chr2	212749785	212749786	rs74338595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q34	NR	rs74338595-?	NR	3E-8		0.01412	[0.0091-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
2208	chr2	212749785	212749786	rs74338595	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling lonely	376,352 European ancestry individuals	NA	2q34	ERBB4	rs74338595-T	0.285559	9E-9		5.74	z score increase	NR [10847151] (imputed)	N
2209	chr2	212868623	212868624	rs1879637	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	2q34	ERBB4	rs1879637-C		4E-6	(Openness)	0.1	[-0.0176-0.2176] unit increase	Illumina [2053685] (imputed)	N
2209	chr2	212911141	212911142	rs73988954	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Cyclothymic temperament	775 European ancestry individuals	NA	2q34		rs73988954-C	NR	9E-6		0.05511	unit decrease	Illumina [2550710] (imputed)	N
2209	chr2	212912471	212912472	rs12616270	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q34	ERBB4	rs12616270-?		7E-6				Illumina [4322238] (imputed)	N
2209	chr2	212913601	212913602	rs538387020	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q34		rs538387020-G	0.0010788	1E-6		0.49508	[0.3-0.69] unit decrease	Affymetrix [15580782] (imputed)	N
2209	chr2	212914725	212914726	rs1464443	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q34	ERBB4	rs1464443-?		1E-6				Illumina [859311]	N
2209	chr2	212936890	212936891	rs12373751	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	2q34	ERBB4	rs12373751-T	0.205628	1E-6		0.577478	[0.35-0.8] unit increase	NR [7263501] (imputed)	N
2209	chr2	212987579	212987580	rs16847741	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	2q34	NR	rs16847741-?	NR	4E-6		0.0877	[0.051-0.125] unit increase	Illumina [at least 560000] (imputed)	N
2210	chr2	213065464	213065465	rs6725041	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	2q34	ERBB4	rs6725041-T	0.48	3E-6		1.52	[0.89-2.15] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2210	chr2	213080785	213080786	rs16847917	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	2q34		rs16847917-T	NR	2E-7		2.76	[1.88-4.04]	Illumina [7582931] (imputed)	N
2210	chr2	213083637	213083638	rs9288447	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	2q34	ERBB4	rs9288447-T	0.5458	3E-9		0.022527	[0.015-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
2210	chr2	213117203	213117204	rs13391128	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q34	NR	rs13391128-G	0.125	2E-9		0.00984652	[0.0067-0.013] unit increase	NR [9732723] (imputed)	N
2210	chr2	213117628	213117629	rs1949651	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	2q34	ERBB4	rs1949651-T	0.5187	3E-11		0.0214	[0.015-0.028] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
2210	chr2	213117628	213117629	rs1949651	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	2q34	NR	rs1949651-T	0.548	9E-6	(men)	0.0229	[0.013-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
2211	chr2	213162028	213162029	rs74865692	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	2q34	ERBB4	rs74865692-T	NR	2E-6		23.67	[14.02-33.33] unit decrease	Illumina [4471676] (imputed)	N
2211	chr2	213165718	213165719	rs78391944	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q34	NR	rs78391944-C	0.029	5E-6		1.04	[0.59-1.49] unit increase	Illumina [9469131] (imputed)	N
2211	chr2	213168767	213168768	rs7588550	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	2q34	ERBB4	rs7588550-A	0.95	2E-7	(T1DN)	1.52	[1.30-1.79]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2211	chr2	213188794	213188795	rs12694277	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q34	ERBB4	rs12694277-T	0.2966	8E-11		0.1765	[0.12-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2211	chr2	213189728	213189729	rs4673659	24824216	Myers RA	2014-05-13	Hum Mol Genet	Genome-wide interaction studies reveal sex-specific asthma risk alleles.	Asthma (sex interaction)	1,052 European ancestry male cases, 1,019 European ancestry female cases, 709 European ancestry male controls, 826 European ancestry female controls, 675 African American/African Caribbean male cases, 837 African American/African Caribbean female cases, 577 African American/African Caribbean male controls, 926 African American/African Caribbean female controls, 926 Latino male cases, 710 Latino female cases, 410 Latino male controls, 382 Latino female controls	NA	2q34	ERBB4	rs4673659-C	0.72	9E-7	(Latino, female)	1.42	[1.23-1.64]	Affymetrix, Illumina [~ 2100000] (imputed)	N
2211	chr2	213214466	213214467	rs2135160	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q34		rs2135160-T	0.9	2E-8		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
2211	chr2	213217315	213217316	rs1910865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q34	NR	rs1910865-T	NR	2E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
2211	chr2	213230640	213230641	rs1394798	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2q34	ERBB4	rs1394798-G	0.4526	8E-7		0.90114	NR	Affymetrix, Illumina [30341632] (imputed)	N
2211	chr2	213246372	213246373	rs75852261	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ERBB4	rs75852261-?	NR	5E-12	(male)	3.11902	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2211	chr2	213246372	213246373	rs75852261	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ERBB4	rs75852261-?	NR	3E-9		1.55424	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2211	chr2	213253405	213253406	rs12694279	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	2q34	NR	rs12694279-C	NR	5E-7		1.19	unit decrease	NR [9015039] (imputed)	N
2212	chr2	213257657	213257658	rs115481520	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	2q34		rs115481520-?	NR	8E-6		1.36889	[1.23-1.51]	NR [675173]	N
2212	chr2	213262216	213262216	rs138517736	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	2q34		rs138517736-AAAGG	NR	5E-17		0.1905	[0.15-0.23] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
2212	chr2	213266002	213266003	rs35544454	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	2q34	ERBB4	rs35544454-A	0.808	1E-11		1.06	[1.04-1.08]	Illumina [34740186] (imputed)	N
2212	chr2	213266002	213266003	rs35544454	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	2q34	ERBB4	rs35544454-A	0.82	2E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2212	chr2	213283189	213283190	rs1394780	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroxine levels	596 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 609 Vis (founder/genetic isolate) individuals	NA	2q34	ERBB4	rs1394780-G	0.26	4E-7		0.2	[0.12-0.28] pmol/L increase	Illumina [7411206] (imputed)	N
2212	chr2	213296862	213296863	rs13393577	22452962	Kim HC	2012-03-27	Breast Cancer Res	A genome-wide association study identifies a breast cancer risk variant in ERBB4 at 2q34: results from the Seoul Breast Cancer Study.	Breast cancer	2,273 Korean ancestry cases, 2,052 Korean ancestry controls	4,049 Korean ancestry cases, 3,845 Korean ancestry controls	2q34	ERBB4	rs13393577-T	0.051	9E-14		1.53	[1.37-1.70]	Affymetrix [555525]	N
2212	chr2	213297252	213297253	rs1505368	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	2q34	NR	rs1505368-A	0.509	1E-6		0.097	[0.058-0.136] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
2212	chr2	213332378	213332379	rs2220024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q34		rs2220024-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2212	chr2	213373324	213373328	rs35591585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q34		rs35591585-T	NR	8E-17		0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2212	chr2	213373520	213373521	rs1384291	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q34	NR	rs1384291-T	0.16	5E-16		0.0203	[0.015-0.025] unit decrease	NR [NR]	N
2213	chr2	213386266	213386267	rs7571561	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (maternal effect)	336 Norwegian ancestry mothers	NA	2q34	NR	rs7571561-G		5E-6				NR [525577]	N
2213	chr2	213387899	213387900	rs7564590	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	2q34	ERB4	rs7564590-T	0.3556	5E-11		1.19	[1.13-1.25]	NR [24154061] (imputed)	N
2213	chr2	213387899	213387900	rs7564590	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age and BMI)	482 European ancestry cases, 91,631 European ancestry controls	2,137 European ancestry cases, 68,690 European ancestry controls	2q34	ERBB4	rs7564590-T	0.3556	5E-9		1.19	[1.13-1.25]	NR [24481103] (imputed)	N
2213	chr2	213389763	213389764	rs16848753	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	IKZF2	rs16848753-?	NR	6E-6	(serotonin)	0.21299885	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2213	chr2	213391765	213391766	rs2178575	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	2q34	ERRB4	rs2178575-A	0.15	3E-14		0.1663	[0.12-0.21] unit increase	Illumina [> 10000000] (imputed)	N
2213	chr2	213394711	213394712	rs1351592	26416764	Day FR	2015-09-29	Nat Commun	Causal mechanisms and balancing selection inferred from genetic associations with polycystic ovary syndrome.	Polycystic ovary syndrome	5,184 European ancestry cases, 82,759 European ancestry controls	374 European ancestry cases, 92,681 European ancestry controls, 1,671 cases, 6,205 controls	2q34	ERBB4	rs1351592-G	0.17	1E-12		1.18	[1.13-1.23]	Illumina [~ 9000000] (imputed)	N
2213	chr2	213401873	213401874	rs13428799	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels	629 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 590 Vis (founder/genetic isolate) individuals	NA	2q34	ERBB4	rs13428799-G	0.09	3E-7		0.34	[0.2-0.48] pmol/L increase	Illumina [7411206] (imputed)	N
2213	chr2	213403090	213403091	rs73989053	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	2q34	NR	rs73989053-G	0.159046	8E-9		0.049551997	[0.033-0.066] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2213	chr2	213403090	213403091	rs73989053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q34	Intergenic	rs73989053-A	0.1707	1E-8	(MTAG)	0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2213	chr2	213403090	213403091	rs73989053	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	2q34	Intergenic	rs73989053-A	0.1707	6E-9		0.0221	[0.015-0.03] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
2213	chr2	213403971	213403972	rs6735626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	2q34		rs6735626-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2213	chr2	213409013	213409014	rs10184221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q34		rs10184221-A	NR	4E-11		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q34	NA	rs7599312-A	0.2732	2E-9		0.0114	[0.0077-0.0151] unit decrease	NR [~ 27400000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q34	NA	rs7599312-A	0.2737	2E-23		0.0182	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q34	NA	rs7599312-A	0.2737	2E-23		0.0182	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q34	NA	rs7599312-A	0.2737	2E-23		0.0182	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q34	NR	rs7599312-G	NR	4E-14		0.021	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q34	ERBB4, MIR4776-2	rs7599312-A	0.26	3E-11		0.021	[0.015-0.027] unit decrease	Illumina [6108953] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	8E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	3E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	3E-7	(women)	0.0296	[0.018-0.041] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	1E-9		0.0262	[0.018-0.035] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	3E-11		0.0252	[0.018-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q34	ERBB4	rs7599312-A	0.2807	2E-7	(women)	0.0272	[0.017-0.037] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q34	NR	rs7599312-A	0.278064219690852	6E-13		0.021526907	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2213	chr2	213413230	213413231	rs7599312	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	ERBB4	rs7599312-G	0.724	9E-9	(EA, men)	0.026	[0.017-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2213	chr2	213413230	213413231	rs7599312	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	ERBB4	rs7599312-G	0.724	1E-10	(EA)	0.022	[0.015-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2213	chr2	213413230	213413231	rs7599312	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	ERBB4	rs7599312-G	0.721	5E-11		0.021	[0.015-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2213	chr2	213414264	213414265	rs13427822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q34		rs13427822-G	NR	4E-15		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2213	chr2	213414264	213414265	rs13427822	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q34	ERBB4	rs13427822-A	0.728811	1E-9		0.00944934	[0.0064-0.0125] unit increase	Affymetrix [12370749]	N
2213	chr2	213414264	213414265	rs13427822	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q34	NR	rs13427822-?	NR	8E-16				Affymetrix [~ 8270000] (imputed)	N
2213	chr2	213414264	213414265	rs13427822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q34		rs13427822-?	NR	2E-16				NR [~ 8900000] (imputed)	N
2214	chr2	213537459	213537460	rs9967727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q34		rs9967727-G	NR	4E-8		0.0613	[0.039-0.083] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
2214	chr2	213542757	213542758	rs17331821	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	2q34		rs17331821-?	NR	1E-6		1.08238	[1.05-1.11]	NR [682398]	N
2214	chr2	213544460	213544460	rs774002109	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q34		rs774002109-A	0.379307	4E-8		1.0729614	NR	Affymetrix [7846216] (imputed)	N
2214	chr2	213552235	213552236	rs559908459	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q34		rs559908459-T	0.0012457	5E-6		0.4316	[0.25-0.62] unit decrease	Affymetrix [15580782] (imputed)	N
2214	chr2	213580722	213580723	rs6435723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q34	IKZF2	rs6435723-?	NR	5E-6	(hypoxanthine)	0.29651988	[0.17-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2214	chr2	213584687	213584688	rs10932444	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	2q34	AC079610.1	rs10932444-?	NR	8E-7		4.946	NR unit decrease	Illumina [up to 1520000] (imputed)	N
2214	chr2	213593969	213593970	rs7565158	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q34	ERBB4	rs7565158-T	0.45	3E-10		1.096	[1.07-1.13]	Illumina [11270530] (imputed)	N
2214	chr2	213593969	213593970	rs7565158	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Body mass index (change over time)	2,643 Bangladeshi ancestry females, 2,340 Bangladeshi ancestry males	NA	2q34	ERBB4, MIR4776-2	rs7565158-A	0.495	6E-7		0.136	[0.083-0.189] unit increase	Illumina [1208102] (imputed)	N
2214	chr2	213602047	213602048	rs6725004	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q34	NR	rs6725004-?		6E-6				Illumina [4322238] (imputed)	N
2214	chr2	213609251	213609252	rs10497985	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	2q34	intergenic	rs10497985-?	NR	4E-6	(EA)	0.0169	[.009684-0.02406] unit increase	Illumina [1530316]	N
2215	chr2	213687102	213687103	rs75179644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q34		rs75179644-C	NR	2E-8		0.0711	[0.046-0.096] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
2215	chr2	213687102	213687103	rs75179644	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2q34	IKZF2	rs75179644-T	0.899	5E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
2215	chr2	213688357	213688358	rs13032656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q34		rs13032656-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2215	chr2	213714254	213714254	rs34871335	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q34	NR	rs34871335-A	0.02091	2E-10	(LRRC59)	0.144	NR unit increase	Illumina [1671387] (imputed)	N
2215	chr2	213719975	213719976	rs6732928	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	2q34		rs6732928-C	NR	3E-6		1.0604	[1.04-1.09]	Illumina [11600722] (imputed)	N
2215	chr2	213722993	213722994	rs75497452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2q34	AC079610.1	rs75497452-A	0.094	4E-10		0.03773182	[0.026-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
2215	chr2	213722993	213722994	rs75497452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	2q34	AC079610.1	rs75497452-A	0.094	9E-11		0.03886099	[0.027-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
2215	chr2	213722993	213722994	rs75497452	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	2q34	AC079610.1	rs75497452-A	0.094	4E-9		0.0356029	[0.024-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
2215	chr2	213723344	213723345	rs62188040	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	2q34	MIR4776-1	rs62188040-C	0.89	3E-8		1.17	NR	Affymetrix [at least 8002429] (imputed)	N
2215	chr2	213728159	213728160	rs62186461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	2q34		rs62186461-C	NR	2E-9		0.1447	[0.097-0.192] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
2215	chr2	213735554	213735555	rs7559013	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q34		rs7559013-C	NR	8E-12		0.0253	[0.018-0.033] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2215	chr2	213735554	213735555	rs7559013	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q34	NR	rs7559013-C	0.1295	9E-11		0.002221	[0.0016-0.0029] unit increase	Affymetrix [NR] (imputed)	N
2215	chr2	213735554	213735555	rs7559013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q34	NR	rs7559013-C	NR	3E-12		0.0261	[0.019-0.034] unit increase	Affymetrix [9000000] (imputed)	N
2215	chr2	213746961	213746962	rs78504246	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		2q34	NR	rs78504246-A	0.005	8E-6		3.57	[2.04-6.23]	Illumina [~ 8000000] (imputed)	N
2215	chr2	213756190	213756191	rs4429415	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (phylum Actinobacteria id.400)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q34		rs4429415-C	NR	2E-7		5.194613	z score increase	Affymetrix, Illumina [NR] (imputed)	N
2215	chr2	213758233	213758234	rs56335522	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	2q34	IKZF2	rs56335522-G		2E-8		1.18	1.11-1.25	NR [NR] (imputed)	N
2215	chr2	213758233	213758234	rs56335522	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2q34	IKZF2	rs56335522-G	NR	2E-13		1.19	1.13-1.24	Affymetrix [at least 665500] (imputed)	N
2215	chr2	213760746	213760747	rs200621439	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	2q34	MIR4776-1	rs200621439-A	NR	2E-11		0.0749	unit decrease	Illumina [15409056] (imputed)	N
2215	chr2	213760746	213760747	rs200621439	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	2q34	MIR4776-1	rs200621439-A	NR	5E-7		0.86269	[0.81-0.92]	Affymetrix, Illumina [14822926] (imputed)	N
2216	chr2	213780170	213780170	rs748982441	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	214,547 European ancestry individuals	NA	2q34	MIR4776-1	rs748982441-TA	0.950905	2E-8		0.036925	[0.024-0.05] unit decrease	NR [16567047] (imputed)	N
2216	chr2	213798994	213798995	rs10210330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q34		rs10210330-?	NR	9E-8				NR [~ 8900000] (imputed)	N
2216	chr2	213817218	213817219	rs2170572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q34		rs2170572-G	NR	2E-114		0.0418	[0.038-0.045] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2216	chr2	213820615	213820616	rs4673709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	AC079610.1	rs4673709-A	0.15705	4E-11		0.021348972	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q34		rs12619285-A	0.735	4E-46				Affymetrix [10369434] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q34	AC079610.1	rs12619285-G	0.265249	2E-146		0.06447924	[0.06-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	AC079610.1	rs12619285-G	0.265288	9E-54		0.049009565	[0.043-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q34		rs12619285-?	NR	1E-152				NR [~ 8900000] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q34	AC079610.1	rs12619285-G	0.265	6E-53		0.06186025	[0.054-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213824044	213824045	rs12619285	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	2q34	IKZF2	rs12619285-G	0.74	5E-10	(EA)	6.3	[4.3-8.3] % standard unit increase	Illumina [312179]	N
2216	chr2	213826150	213826151	rs10189498	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	2q34		rs10189498-A	0.569	2E-8		0.0672	[0.044-0.091] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2216	chr2	213826150	213826151	rs10189498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs10189498-A	0.327458	1E-206				Affymetrix, Illumina [19872809] (imputed)	N
2216	chr2	213826150	213826151	rs10189498	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q34	AC079610.1	rs10189498-A	0.2642	8E-42		0.05507166	[0.047-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213827185	213827186	rs6723724	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q34	AC079610.1	rs6723724-A	0.2642	1E-49		0.060023	[0.052-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213829720	213829721	rs4673712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q34	NR	rs4673712-C	0.2897	2E-9		0.0269	[0.018-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2216	chr2	213830186	213830187	rs6750754	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q34	NR	rs6750754-G	0.264203	8E-179		0.063977	[0.06-0.068] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2216	chr2	213830186	213830187	rs6750754	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q34	AC079610.1	rs6750754-G	0.2643	6E-51		0.06077427	[0.053-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213830186	213830187	rs6750754	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q34	AC079610.1	rs6750754-G	0.2643	4E-46		0.0579508	[0.05-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213835123	213835124	rs1482577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	2q34		rs1482577-A	0.685435	2E-25		0.0492828	[0.04-0.059] unit decrease	Illumina [13470073] (imputed)	N
2216	chr2	213835976	213835977	rs17354348	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q34	NR	rs17354348-G	0.2583	3E-8		0.0294	[0.019-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2216	chr2	213836205	213836206	rs13022407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	2q34	NR	rs13022407-T	0.314351	2E-28		0.05702	[0.047-0.067] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
2216	chr2	213836205	213836206	rs13022407	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	2q34	MIR4776-2, IKZF2	rs13022407-?	NR	6E-19		0.05486	[0.043-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
2216	chr2	213838446	213838449	rs35088218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q34	AC079610.1	rs35088218-A	0.839055	1E-16		0.025138112	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2216	chr2	213838448	213838451	rs3069563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	2q34		rs3069563-A	NR	3E-8		0.015	[0.0097-0.0203] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
2216	chr2	213841095	213841096	rs111859325	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q34	IKZF2	rs111859325-T	0.98	4E-7		0.0058	[0.0033-0.0083] unit increase	Affymetrix [NR] (imputed)	N
2216	chr2	213841095	213841096	rs111859325	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	2q34	IKZF2	rs111859325-T	0.9797	9E-6	(EA)	0.0057	[0.0032-0.0082] unit increase	Affymetrix [NR] (imputed)	N
2216	chr2	213844821	213844822	rs73987603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q34	NR	rs73987603-A	0.148213	3E-16				Affymetrix, Illumina [19905671] (imputed)	N
2216	chr2	213844821	213844822	rs73987603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q34	NR	rs73987603-A	0.166369	3E-18		0.024035	[0.019-0.029] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
2216	chr2	213857249	213857250	rs57338137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2q34	AC079610.1	rs57338137-C	0.077484	1E-12		0.029622778	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2216	chr2	213870964	213870965	rs72944387	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q34		rs72944387-C	0.746	2E-13		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
2216	chr2	213871708	213871709	rs3768792	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	2q34	IKZF2	rs3768792-C		1E-13		1.24	[1.17-1.31]	Illumina [644674]	N
2216	chr2	213879406	213879407	rs1871946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	IKZF2	rs1871946-C	0.426165	5E-12		0.019447163	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2216	chr2	213884665	213884666	rs2371790	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	2q34	NR	rs2371790-A	0.224	6E-9		1.107	[1.07-1.14]	Illumina [11270530] (imputed)	N
2216	chr2	213886453	213886454	rs2291241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q34		rs2291241-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2216	chr2	213889941	213889942	rs141312283	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	2q34	NR	rs141312283-G		6E-6		0.268	[0.15-0.39] SD units increase	NR [10700000] (imputed)	N
2216	chr2	213890231	213890232	rs10048743	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	2q34	IKZF2	rs10048743-?	0.129	2E-8	(EA)	1.26	[NR]	NR [6344733] (imputed)	N
2216	chr2	213890231	213890232	rs10048743	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	2q34	IKZF2	rs10048743-G		2E-10		1.25	[NR]	Illumina [> 644674] (imputed)	N
2216	chr2	213898231	213898232	rs1586068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q34	IKZF2	rs1586068-G	0.9174	1E-12		0.04644346	[0.034-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213898231	213898232	rs1586068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q34	IKZF2	rs1586068-G	0.9174	1E-10		0.04209448	[0.029-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213898231	213898232	rs1586068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q34	IKZF2	rs1586068-G	0.9174	2E-14		0.04980414	[0.037-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213898231	213898232	rs1586068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q34	IKZF2	rs1586068-G	0.9174	2E-13		0.04821435	[0.035-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213898231	213898232	rs1586068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q34	IKZF2	rs1586068-G	0.9174	2E-15		0.05173529	[0.039-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2216	chr2	213902541	213902542	rs2086643	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q34		rs2086643-A	0.075	2E-16				Affymetrix [10369434] (imputed)	N
2216	chr2	213908456	213908457	rs35409523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q34	IKZF2	rs35409523-A	0.07565	5E-37		0.053294934	[0.045-0.062] unit increase	Affymetrix [93095623] (imputed)	N
2216	chr2	213908456	213908457	rs35409523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	IKZF2	rs35409523-A	0.075654	2E-27		0.047069177	[0.039-0.056] unit increase	Affymetrix [93095623] (imputed)	N
2217	chr2	213911434	213911435	rs72948213	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	2q34	NR	rs72948213-C	0.02706	2E-6		0.4472	[0.26-0.63] unit increase	Illumina [10677593] (imputed)	N
2217	chr2	213928743	213928744	rs66531832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q34	NR	rs66531832-G	0.278	1E-8		0.00692797	[0.0045-0.0093] unit increase	NR [9732723] (imputed)	N
2217	chr2	213929173	213929174	rs116399861	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q34	NR	rs116399861-?	NR	4E-8				Illumina [7760689] (imputed)	N
2217	chr2	213929285	213929286	rs10186029	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	2q34	IKZF2	rs10186029-?		1E-6	(AA)			Illumina [~ 2500000] (imputed)	N
2217	chr2	213935899	213935900	rs10203838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q34	NR	rs10203838-C	0.417873	5E-11		0.012292	[0.0086-0.0159] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2217	chr2	213938552	213938553	rs11689895	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q34		rs11689895-G	0.524	2E-15				Affymetrix [10369434] (imputed)	N
2217	chr2	213961691	213961692	rs60383584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q34		rs60383584-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2217	chr2	213970186	213970187	rs116588314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q34	IKZF2	rs116588314-A	0.021628	1E-12		0.054150674	[0.039-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr2	213970186	213970187	rs116588314	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q34	IKZF2	rs116588314-A	0.021627	2E-13		0.05653922	[0.041-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
2217	chr2	214009830	214009831	rs1441165	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q34	IKZF2	rs1441165-A	0.465852	3E-9		0.0109335	[0.0073-0.0145] unit decrease	NR [13737936] (imputed)	N
2217	chr2	214009830	214009831	rs1441165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q34		rs1441165-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2217	chr2	214012224	214012225	rs112905092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q34		rs112905092-T	NR	4E-9		0.0556	[0.037-0.074] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2217	chr2	214012224	214012225	rs112905092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q34		rs112905092-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2217	chr2	214012404	214012405	rs6738070	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	2q34	NR	rs6738070-?	NR	6E-6		0.8472207	[0.79-0.91]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2217	chr2	214012466	214012467	rs61762988	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	2q34		rs61762988-?	NR	4E-11		0.113997	[0.081-0.147] unit increase	NR [9800000] (imputed)	N
2217	chr2	214012507	214012508	rs6709554	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	2q34	NR	rs6709554-?	NR	9E-7		0.0713	[0.043-0.1] unit increase	Illumina [~ 7800000] (imputed)	N
2217	chr2	214018980	214018981	rs62189580	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q34	IKZF2	rs62189580-G	NR	8E-7		1.0566	NR	Affymetrix, Illumina [8278136] (imputed)	N
2217	chr2	214026383	214026384	rs72949953	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Ulcerative colitis	208 European ancestry cases, 935 European ancestry controls	NA	2q34		rs72949953-A	0.039	1E-6		3.2		Illumina [5409651] (imputed)	N
2217	chr2	214033529	214033530	rs1441169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q34		rs1441169-G	NR	6E-23		0.0238	[0.019-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
2217	chr2	214033529	214033530	rs1441169	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q34	NR	rs1441169-A	0.474983	4E-24		0.021136	[0.017-0.025] unit increase	NR [NR]	N
2217	chr2	214033529	214033530	rs1441169	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	2q34	IKZF2	rs1441169-G	0.53	2E-11		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
2217	chr2	214034103	214034104	rs72949976	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q34	NR	rs72949976-T	0.4	2E-6		1.07	[1.03-1.11]	Illumina [8468885] (imputed)	N
2217	chr2	214034103	214034104	rs72949976	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	2q34	IKZF2, LOC100130451	rs72949976-T	0.377410435	5E-6		1.0923936	[1.051643997-1.134722364]	Illumina [10439017] (imputed)	N
2217	chr2	214034103	214034104	rs72949976	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q34	IKZF2, LOC100130451	rs72949976-T	0.381965863	5E-6		1.057067	[1.03226987-1.08245977]	Illumina [10439017] (imputed)	N
2217	chr2	214040424	214040425	rs7573232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q34	NR	rs7573232-T	NR	3E-15		0.0202	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2218	chr2	214050971	214050972	rs115978073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q34		rs115978073-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2218	chr2	214061452	214061453	rs80168506	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	2q34	IKZF2	rs80168506-G		3E-7		0.64	[NR]	Illumina [up to 9464381] (imputed)	N
2218	chr2	214065879	214065880	rs16849932	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	2q34	RP11-105N14.3	rs16849932-G	0.91774	1E-10				Affymetrix, Illumina [NR] (imputed)	N
2218	chr2	214082791	214082792	rs79651842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q34		rs79651842-?	NR	9E-18				NR [~ 8900000] (imputed)	N
2218	chr2	214118024	214118025	rs16850049	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q34	NR	rs16850049-?	NR	7E-11				Affymetrix [NR]	N
2219	chr2	214275247	214275248	rs192422946	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q34	NR	rs192422946-?	NR	6E-6		7359.0737	NR unit decrease	Illumina [2379855]	N
2220	chr2	214332514	214332515	rs11898702	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	2q34	NR	rs11898702-G	0.01927	4E-6		0.4998	[0.29-0.71] unit increase	Illumina [10677593] (imputed)	N
2221	chr2	214548536	214548537	rs6707387	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	2q34	SPAG16	rs6707387-A	0.272	1E-6	(Protein (control))			Affymetrix [590000]	N
2221	chr2	214548536	214548537	rs6707387	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	2q34	SPAG16	rs6707387-A	0.272	6E-7	(Protein (control))			Affymetrix [590000]	N
2222	chr2	214625688	214625689	rs772465363	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q34	SPAG16	rs772465363-C	0.9985	5E-6		1.6915	[0.97-2.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2222	chr2	214625688	214625689	rs772465363	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	2q34	SPAG16	rs772465363-C	0.9985	5E-6		1.6915	[0.97-2.42] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2223	chr2	214713577	214713578	rs11685323	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	2q34	SPAG16	rs11685323-C	NR	5E-6		1.1299435	[1.07-1.2]	Illumina [6627481] (imputed)	N
2224	chr2	214838512	214838513	rs9789347	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q34	SPAG16	rs9789347-A	0.326	8E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
2224	chr2	214917401	214917402	rs1510552	24152035	Goodbourn PT	2013-10-23	Genes Brain Behav	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	NA	2q34	SPAG16	rs1510552-?	0.1593	1E-6		3.04	[NR] unit increase	Illumina [642758]	N
2224	chr2	214933739	214933740	rs17813412	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q34	NR	rs17813412-?	NR	2E-11				Affymetrix [NR]	N
2224	chr2	214953647	214953648	rs7578892	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	2q34	NR	rs7578892-G		2E-6		0.1173	[0.068-0.166] SD units increase	NR [10700000] (imputed)	N
2225	chr2	215009357	215009358	rs7597126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs7597126-T	0.4915	2E-11		0.0094	[0.0067-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2225	chr2	215009357	215009358	rs7597126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q34	Intergenic	rs7597126-T	0.4915	1E-12	(MTAG)	0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2225	chr2	215048211	215048212	rs10190431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs10190431-T	0.5802	6E-10	(conditional-joint)	0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2225	chr2	215051956	215051957	rs13004882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q34	Intergenic	rs13004882-T	0.4147	4E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2226	chr2	215094265	215094266	rs35824328	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	HIV-associated neurocognitive disorder (mild neurocognitive disorder)	30 African American cases, 45 European ancestry cases, 17 Hispanic cases, 297 African American controls, 230 European ancestry controls, 29 Hispanic controls, 11 controls	NA	2q34	SPAG16	rs35824328-C		7E-6		2.793	[NR]	Affymetrix [NR]	N
2226	chr2	215119798	215119799	rs114974608	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q34	Intergenic	rs114974608-A	0.9844	1E-8	(MTAG)	0.0528	[0.035-0.071] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2226	chr2	215148114	215148115	rs10439273	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs10439273-A	0.04	9E-7	(AA)	0.069	NR unit increase	Illumina [NR] (imputed)	N
2226	chr2	215158265	215158266	rs72946119	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs72946119-T	0.955	8E-7	(AA)	0.074	NR unit decrease	Illumina [NR] (imputed)	N
2226	chr2	215177989	215177990	rs72952023	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q34	SPAG16	rs72952023-T	0.05414	8E-8	(African)			Illumina [4404269] (imputed)	N
2226	chr2	215178268	215178269	rs72952025	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs72952025-C	0.951	1E-6	(AA)	0.068	NR unit decrease	Illumina [NR] (imputed)	N
2226	chr2	215181888	215181889	rs9677504	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	2q34	NR	rs9677504-?		1E-8				NR [520857]	N
2226	chr2	215181888	215181889	rs9677504	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	2q34	NR	rs9677504-?		1E-8				NR [8028859]	N
2226	chr2	215181888	215181889	rs9677504	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q34	SPAG16, VWC2L	rs9677504-?		7E-9				NR [6786993] (imputed)	N
2226	chr2	215181888	215181889	rs9677504	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	2q34	SPAG16	rs9677504-G	NR	9E-7		1.066098	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
2226	chr2	215183868	215183869	rs146151667	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	2q34	NR	rs146151667-G		3E-7		0.5072	[0.32-0.7] SD units decrease	NR [10700000] (imputed)	N
2226	chr2	215188618	215188619	rs16851771	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q34	SPAG16	rs16851771-G	0.061	2E-6	(Urinary free dopamine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
2226	chr2	215189949	215189950	rs16851779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs16851779-T	0.9246	9E-9		0.0153	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2226	chr2	215189949	215189950	rs16851779	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q34	Intergenic	rs16851779-T	0.9246	2E-9	(MTAG)	0.0149	[0.01-0.0198] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2226	chr2	215199986	215199987	rs10932534	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs10932534-C	0.282	5E-6	(AA)	0.03	NR unit increase	Illumina [NR] (imputed)	N
2226	chr2	215217541	215217542	rs1912191	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs1912191-A	0.28	4E-6	(AA)	0.03	NR unit increase	Illumina [NR] (imputed)	N
2226	chr2	215218866	215218867	rs1912188	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs1912188-A	0.285	1E-6	(AA)	0.033	NR unit increase	Illumina [NR] (imputed)	N
2226	chr2	215219186	215219187	rs13017349	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q34	SPAG16	rs13017349-A	0.236	1E-6	(AA)	0.035	NR unit increase	Illumina [NR] (imputed)	N
2226	chr2	215219807	215219808	rs13023832	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	at least 19,099 European ancestry cases, at least 34,194 European ancestry controls	2,726 European ancestry cases, 16,299 European ancestry controls	2q34	NR	rs13023832-A	0.0924	2E-9		0.11864455	[0.08-0.157] unit increase	NR [NR]	N
2227	chr2	215257670	215257671	rs10167079	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q34	SPAG16	rs10167079-G	0.894	3E-6	(EA)	0.024	[0.014-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2227	chr2	215289284	215289285	rs7558283	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q34	AC107218.3, VWC2L	rs7558283-C	0.4776	9E-12		0.013779658	[0.0098-0.0177] unit increase	Affymetrix [up to 18485882] (imputed)	N
2227	chr2	215289284	215289285	rs7558283	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q34	ENSG00000197585	rs7558283-?	NR	5E-8		0.010967125	[0.007-0.0149] unit decrease	NR [7306098]	N
2227	chr2	215331863	215331864	rs13418577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q34	Intergenic	rs13418577-T	0.859	5E-10	(MTAG)	0.0205	[0.014-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2227	chr2	215341889	215341890	rs7604827	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	2q34	VWC2L	rs7604827-C		5E-6		6.54	[NR] ms increase	Illumina [> 930000]	N
2228	chr2	215358903	215358904	rs4365462	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Degraded stimulus continuous performance test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q34	VWC2L	rs4365462-A	NR	6E-6		0.49881685	[0.28-0.72] unit increase	Illumina [> 6200000] (imputed)	N
2228	chr2	215361612	215361613	rs4507103	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q34	Intergenic	rs4507103-A	0.3889	1E-9	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2228	chr2	215363240	215363241	rs4673840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q34	Intergenic	rs4673840-T	0.8414	8E-13	(MTAG)	0.0162	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2228	chr2	215363240	215363241	rs4673840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q34		rs4673840-T	0.842	6E-13		0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2228	chr2	215363240	215363241	rs4673840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q34	Intergenic	rs4673840-T	0.842	2E-15	(MTAG)	0.0142	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2228	chr2	215366181	215366182	rs7602370	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q35	AC107218.3, VWC2L	rs7602370-T	0.4785	1E-9		0.012272791	[0.0083-0.0162] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2228	chr2	215382653	215382654	rs34967082	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q35	NR	rs34967082-A	0.4136	4E-9		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2228	chr2	215382653	215382654	rs34967082	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q35	NA	rs34967082-A	0.4068	2E-8	(Female)	1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
2228	chr2	215382653	215382654	rs34967082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q35		rs34967082-A	0.4161	2E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2228	chr2	215439707	215439708	rs17711053	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	2q35	NR	rs17711053-G	NR	4E-8		0.01842	[0.012-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
2228	chr2	215440961	215440962	rs36012009	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2q35	Intergenic	rs36012009-?	NR	5E-7		1.83	[NR]	Affymetrix [492217] (imputed)	N
2228	chr2	215447952	215447953	rs7425093	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q35	BARD1	rs7425093-A	0.154	4E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2228	chr2	215449017	215449018	rs988867	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q35	BARD1	rs988867-T	0.144277	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
2228	chr2	215452466	215452467	rs9967747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q35	NR	rs9967747-C	0.864863407412021	1E-9		0.008126262	[0.0055-0.0108] unit increase	NR [NR]	N
2228	chr2	215452466	215452467	rs9967747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q35	NR	rs9967747-C	0.864863407412021	6E-9		0.009901032	[0.0066-0.0132] unit increase	NR [NR]	N
2228	chr2	215452466	215452467	rs9967747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q35	NR	rs9967747-C	0.864863407412021	5E-9		0.01302781	[0.0087-0.0174] unit increase	NR [NR]	N
2228	chr2	215452466	215452467	rs9967747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q35	NR	rs9967747-C	0.864863407412021	1E-8		0.010511725	[0.0069-0.0141] unit increase	NR [NR]	N
2228	chr2	215452466	215452467	rs9967747	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q35	NR	rs9967747-C	0.864863407412021	8E-9		0.008181198	[0.0054-0.011] unit increase	NR [NR]	N
2228	chr2	215453226	215453227	rs4673866	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	2q35	ENSG00000197585	rs4673866-A	NR	5E-9		0.010377	[0.0069-0.0138] unit increase	Affymetrix [18485882] (imputed)	N
2228	chr2	215453226	215453227	rs4673866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q35		rs4673866-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2228	chr2	215453226	215453227	rs4673866	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	2q35	VWC2L	rs4673866-A	0.14402000000000004	6E-9		5.827	z score decrease	Illumina [18485882] (imputed)	N
2229	chr2	215498325	215498326	rs78720888	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q35	NR	rs78720888-A	NR	2E-9		5.994	z score decrease	Affymetrix [10847151] (imputed)	N
2229	chr2	215515656	215515657	rs1400868	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	2q35	BARD1	rs1400868-C	0.122795	2E-8		5.59	z score increase	NR [10847151] (imputed)	N
2229	chr2	215515696	215515697	rs1400867	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	2q35	NR	rs1400867-A	0.1267	1E-9		0.0168	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
2229	chr2	215515696	215515697	rs1400867	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	2q35	NR	rs1400867-A	0.1225	5E-9		0.025	[0.017-0.033] unit decrease	Illumina [NR] (imputed)	N
2229	chr2	215515696	215515697	rs1400867	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	2q35	NR	rs1400867-A	0.1251	7E-10		0.0199	[0.014-0.026] unit decrease	Illumina [NR] (imputed)	N
2230	chr2	215635793	215635794	rs3768716	21124317	Wang K	2010-12-01	Nature	Integrative genomics identifies LMO1 as a neuroblastoma oncogene.	Neuroblastoma	1,627 European ancestry child cases, 3,254 European ancestry child controls	624 European ancestry child cases, 2,843 European ancestry child controls	2q35	BARD1	rs3768716-C	0.23	5E-13		1.386	[NR]	Illumina [480279]	N
2230	chr2	215643499	215643500	rs17487792	28924153	Chang X	2017-09-18	Nat Commun	Common variants in MMP20 at 11q22.2 predispose to 11q deletion and neuroblastoma risk.	Neuroblastoma (MYCN amplification)	260 European ancestry cases, 5,109 European ancestry controls	NA	2q35	BARD1	rs17487792-T	NR	6E-14		2.007		Illumina [NR]	N
2230	chr2	215653886	215653887	rs7587476	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	2q35		rs7587476-T	NR	8E-10		0.5154	unit increase	Illumina [NR] (imputed)	N
2230	chr2	215653886	215653887	rs7587476	22941191	Diskin SJ	2012-09-02	Nat Genet	Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.	Neuroblastoma	2,101 European ancestry cases, 4,202 European ancestry controls	351 European ancestry cases, 780 European ancestry controls, 365 African American cases, 2,491 African American controls	2q35	BARD1	rs7587476-T	0.246	4E-14		1.372	[NR]	Illumina [426697]	N
2230	chr2	215672545	215672546	rs6435862	19412175	Capasso M	2009-05-03	Nat Genet	Common variations in BARD1 influence susceptibility to high-risk neuroblastoma.	Neuroblastoma (high-risk)	397 European ancestry cases, 2,043 European ancestry controls	371 European ancestry cases, 2,119 European ancestry controls	2q35	BARD1	rs6435862-G	0.29	9E-18		1.68	[1.49-1.90]	Illumina [462866]	N
2230	chr2	215674089	215674090	rs35933323	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	2q35		rs35933323-T	NR	5E-7		0.3716	unit increase	Illumina [8524982] (imputed)	N
2230	chr2	215699446	215699447	rs58430496	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	2q35	BARD1	rs58430496-T	0.24748	3E-11	(European American)	1.36	[1.25-1.48]	Illumina [7968453] (imputed)	N
2232	chr2	215929124	215929125	rs10210200	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	2q35	NR	rs10210200-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
2232	chr2	215951629	215951630	rs940274	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	2q35	NR	rs940274-?	NR	4E-6				Affymetrix [NR]	N
2232	chr2	215972059	215972060	rs2970963	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	2q35	NR	rs2970963-T	0.97	6E-6	(Asian)	0.32	[0.18-0.46] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2233	chr2	216079162	216079163	rs7424551	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2q35	AC073284.4	rs7424551-G	0.35	7E-8		0.94	[0.61-1.27] g/day increase	Affymetrix [10353649] (imputed)	N
2233	chr2	216114256	216114257	rs10932600	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	2q35	ATIC	rs10932600-A	NR	1E-6	(WAP, Cases)	0.32	[0.19-0.45] unit decrease	Illumina [7600000] (imputed)	N
2234	chr2	216238970	216238970	rs35233997	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q35	Intergenic	rs35233997-?	0.3038229	3E-12	(EA, Fibronectin Fragment 3)	0.3258	[0.24-0.42] unit increase	Affymetrix [509946]	N
2234	chr2	216242916	216242917	rs1132741	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	cFib plasma levels	400 French ancestry individuals	NA	2q35		rs1132741-T	NR	4E-47		0.815	[0.74-0.89] ug/mL increase	Illumina [5201092] (imputed)	N
2234	chr2	216245693	216245694	rs34923683	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q35	FN1	rs34923683-A	0.02	7E-9		0.646	[0.43-0.86] unit increase	Affymetrix [~ 9800000] (imputed)	N
2234	chr2	216246209	216246210	rs11687442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q35		rs11687442-G	NR	1E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2234	chr2	216246657	216246658	rs2289198	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs2289198-A	0.316035	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
2234	chr2	216248605	216248606	rs13018173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q35		rs13018173-C	NR	1E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2234	chr2	216250262	216250263	rs11897252	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q35	NR	rs11897252-T	0.23425	4E-11		0.014349	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2234	chr2	216250498	216250499	rs376022098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q35	NR	rs376022098-I	0.208232	3E-12		0.017656	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2234	chr2	216250499	216250499	rs199519396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q35	FN1	rs199519396-AC	0.206917	1E-10		0.018024167	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2234	chr2	216252093	216252095	rs5838506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	FN1	rs5838506-A	0.231683	1E-10		0.0167535	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2234	chr2	216252093	216252095	rs5838506	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q35	FN1	rs5838506-A	0.231697	2E-9		0.015586437	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2234	chr2	216253038	216253039	rs1250215	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Negative urgency	22,795 European ancestry individuals	NA	2q35	FN1	rs1250215-G	0.371	5E-7		0.047	[0.028-0.065] unit increase	Illumina [11434023] (imputed)	N
2235	chr2	216285374	216285375	rs17458018	22319020	Davies RW	2012-02-07	Circ Cardiovasc Genet	A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex.	Coronary heart disease	7,123 European ancestry cases, 6,826 European ancestry controls	5,211 European ancestry cases, 5,821 European ancestry controls	2q35	FN	rs17458018-?	NR	7E-6		1.22	[NR]	Affymetrix [~ 5000000] (imputed)	N
2235	chr2	216287092	216287093	rs1250248	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q35		rs1250248-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2235	chr2	216287092	216287093	rs1250248	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	2q35	FN1	rs1250248-A	0.214	5E-8	(Trans-ethnic initial)	0.0204	[0.013-0.028] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2235	chr2	216287496	216287497	rs16854041	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q35	FN1	rs16854041-A	0.744632	1E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
2235	chr2	216291358	216291359	rs17517928	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	2q35	FN1	rs17517928-C	0.75	1E-8		1.06	[1.04-1.08]	Affymetrix [9061845] (imputed)	N
2235	chr2	216299628	216299629	rs1250247	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q35	FN1	rs1250247-C		1E-12		0.31	unit increase	Affymetrix [at least 2696785] (imputed)	N
2235	chr2	216299628	216299629	rs1250247	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q35	FN1	rs1250247-C		7E-11		0.273	unit increase	Affymetrix [at least 2696785] (imputed)	N
2235	chr2	216299628	216299629	rs1250247	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q35	FN1	rs1250247-C		3E-9	(EA)	0.268	unit increase	Affymetrix [at least 2696785] (imputed)	N
2235	chr2	216299628	216299629	rs1250247	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q35	FN1	rs1250247-C		1E-21		0.279	unit increase	Affymetrix [at least 2696785] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUSK	5,366 Icelandic ancestry individuals	NA	2q35		rs1250258-C	0.3196	4E-17		0.171037	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,357 Icelandic ancestry individuals	NA	2q35		rs1250258-C	0.3196	2E-153		0.499704	[0.46-0.54] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,356 Icelandic ancestry individuals	NA	2q35		rs1250258-C	0.3196	3E-71		0.349422	[0.31-0.39] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FN1	5,339 Icelandic ancestry individuals	NA	2q35		rs1250258-C	0.3196	4E-117		0.416507	[0.38-0.45] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q35		rs1250258-T	NR	7E-9		0.069	[0.046-0.092] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q35	FN1	rs1250258-C	0.263353	7E-9		0.0137293	[0.0091-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q35	FN1	rs1250258-C	0.263261	2E-9		0.0140874	[0.0095-0.0187] unit decrease	Affymetrix [NR] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q35	NR	rs1250258-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs1250258-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q35		rs1250258-?	NR	7E-12				NR [~ 8900000] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	2q35	FNI	rs1250258-?	NR	3E-8		1.2345679	[1.14-1.35]	Illumina [NR] (imputed)	N
2235	chr2	216300184	216300185	rs1250258	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q35	FN1, AC012462.1	rs1250258-C	0.2545181	2E-42	(Fibronectin Fragment 3)	0.6675	[0.58-0.76] unit decrease	Affymetrix [509946]	N
2235	chr2	216300184	216300185	rs1250258	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q35	FN1, AC012462.1	rs1250258-C	0.2545181	1E-9	(Fibronectin Fragment 4)	0.3092	[0.21-0.41] unit decrease	Affymetrix [509946]	N
2235	chr2	216300184	216300185	rs1250258	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	2q35	FN1, AC012462.1	rs1250258-C	0.2545181	1E-49	(Fibronectin)	0.7113	[0.62-0.8] unit decrease	Affymetrix [509946]	N
2235	chr2	216300481	216300482	rs1250259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein P4HB	5,354 Icelandic ancestry individuals	NA	2q35		rs1250259-T	0.3197	2E-18		0.164967	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPNT	5,364 Icelandic ancestry individuals	NA	2q35		rs1250259-T	0.3197	6E-94		0.398757	[0.36-0.44] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q35		rs1250259-A	NR	3E-14		0.0183	[0.014-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q35		rs1250259-A	NR	6E-29		0.0256	[0.021-0.03] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	2q35	FN1	rs1250259-T	0.288	2E-10		0.024	[0.032-0.017] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q35	FN1	rs1250259-?	NR	3E-11		0.04081	[0.029-0.053] unit decrease	Illumina [4804024] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q35		rs1250259-?	NR	2E-22				NR [~ 8900000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q35	FN1	rs1250259-T	0.7447	1E-9		0.4518	[0.31-0.6] mmHg decrease	Affymetrix [NR] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q35	FN1	rs1250259-T	0.7437	3E-16		0.4236	[0.32-0.52] mmHg decrease	Affymetrix [NR] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q35	FN1	rs1250259-T	0.3196	1E-16		0.4275	[0.33-0.53] mmHg increase	Affymetrix [NR] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q35	NR	rs1250259-A	0.7409	1E-15		0.0164	[0.012-0.02] unit decrease	NR [~ 27400000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q35	NR	rs1250259-A	0.7409	1E-7		0.0108	[0.0069-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	9E-9	(SET, 5364_7_3)	0.15067199	[0.099-0.202] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	5E-9	(MUSK, 11547_84_3)	0.15444492	[0.1-0.21] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	5E-89	(FN1, 4131_72_2)	0.50455123	[0.46-0.55] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	5E-13	(NDUFS4, 10584_7_3)	0.185187	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	3E-63	(FN1, 3435_53_2)	0.42652744	[0.38-0.48] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	2E-39	(FN1, 3434_34_1)	0.33693036	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	2E-13	(SSR1, 8106_15_3)	0.18947625	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	2E-11	(P4HB, 11450_110_3)	0.17607602	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	NR	rs1250259-A	0.6746875	1E-59	(NPNT, 6342_10_3)	0.4210204	[0.37-0.47] unit increase	Illumina [> 1000000] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q35	FN1	rs1250259-A	0.726	5E-11		0.048	[0.034-0.062] unit decrease	Affymetrix [7947838] (imputed)	N
2235	chr2	216300481	216300482	rs1250259	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q35	FN1	rs1250259-A	0.74	9E-19		0.314	[0.24-0.39] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2235	chr2	216303052	216303053	rs3910516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	AC012462.1	rs3910516-A	NR	2E-11		0.0214346	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
2235	chr2	216303052	216303053	rs3910516	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	AC012462.1	rs3910516-A	NR	4E-12		0.0221886	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
2235	chr2	216303812	216303813	rs76152268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs76152268-?	NR	2E-23				NR [~ 8900000] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	AC012462.1	rs1250229-T	NR	7E-11		0.0211415	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q35	AC012462.1	rs1250229-T	NR	2E-8		0.0181786	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2q35	FN1, MREG	rs1250229-T	0.26	2E-14		1.07	[1.05-1.10]	Illumina [5167567] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q35	FN1	rs1250229-T	0.2722	2E-13		0.0435	[0.032-0.055] unit increase	Affymetrix [at least 7947838] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q35	FN1	rs1250229-T	0.2621	3E-19		0.0644	[0.05-0.079] unit increase	NR [8041861] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2q35	FN1	rs1250229-T	0.264	3E-13		1.071	[1.051-1.091]	Affymetrix [9149595] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2q35	FN1	rs1250229-T	0.211	2E-9	(Trans-ethnic initial)	0.0243	[0.016-0.033] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	2q35	FN1	rs1250229-C	NR	1E-8		0.023	[0.015-0.031] unit increase	Affymetrix [at least 370268] (imputed)	N
2235	chr2	216304383	216304384	rs1250229	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q35	FN1	rs1250229-T	0.27	3E-8		0.024	[NR] unit decrease	NR [NR] (imputed)	N
2235	chr2	216306634	216306635	rs1250232	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SSR1	5,361 Icelandic ancestry individuals	NA	2q35		rs1250232-C	0.3167	3E-20		0.184692	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216306634	216306635	rs1250232	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NDUFS4	5,361 Icelandic ancestry individuals	NA	2q35		rs1250232-C	0.3167	1E-19		0.182339	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
2235	chr2	216352518	216352519	rs149201869	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	2q35	NR	rs149201869-?	NR	9E-7	(AA)	5.57	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2236	chr2	216484750	216484751	rs16854526	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q35	ATIC	rs16854526-?	NR	7E-6	(kynurenine)	0.24355033	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2236	chr2	216485140	216485141	rs1898711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	AC012668.2, LINC00607	rs1898711-T	NR	2E-8		0.0198369	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
2236	chr2	216485140	216485141	rs1898711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs1898711-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2236	chr2	216485140	216485141	rs1898711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs1898711-?	NR	4E-14				NR [~ 8900000] (imputed)	N
2236	chr2	216485512	216485513	rs1519021	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	AC012668.2, LINC00607	rs1519021-C	NR	2E-8		0.0162954	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
2236	chr2	216514685	216514685	rs551708639	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q35		rs551708639-AACTT	NR	6E-6		1.20334		Affymetrix, Illumina [62056310] (imputed)	N
2236	chr2	216523672	216523673	rs374193423	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	2q35	NR	rs374193423-C	0.2981	6E-6		0.1794	[0.11-0.24] unit increase	Illumina [10677593] (imputed)	N
2237	chr2	216542412	216542413	rs35453391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs35453391-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2237	chr2	216614925	216614926	rs6758001	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	2q35	LINC00607	rs6758001-?		9E-6		0.638	[NR] unit increase	Illumina [5970354] (imputed)	N
2237	chr2	216631365	216631366	rs4674024	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	2q35	LINC00607	rs4674024-?		2E-6	(males)			Illumina [1211988] (imputed)	N
2238	chr2	216698029	216698030	rs78585132	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	2q35	NR	rs78585132-G	0.01032	3E-6		0.7053	[0.41-1] unit decrease	Illumina [10677593] (imputed)	N
2238	chr2	216745390	216745391	rs4073010	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs4073010-T	0.03833	2E-9	(CYP2D6)	0.07694	NR unit increase	Illumina [1671387] (imputed)	N
2238	chr2	216745967	216745968	rs150287510	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs150287510-T	0.0122	4E-10	(AKR1C3)	0.5817	NR unit increase	Illumina [1671387] (imputed)	N
2238	chr2	216745967	216745968	rs150287510	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs150287510-T	0.0122	3E-8	(UGDH)	1.425	NR unit increase	Illumina [1671387] (imputed)	N
2238	chr2	216745967	216745968	rs150287510	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs150287510-T	0.0122	1E-8	(AKR1C2)	1.009	NR unit increase	Illumina [1671387] (imputed)	N
2238	chr2	216745967	216745968	rs150287510	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs150287510-T	0.0122	1E-12	(AKR1B10)	2.529	NR unit increase	Illumina [1671387] (imputed)	N
2239	chr2	216810611	216810612	rs74371935	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs74371935-T	0.1045	2E-8	(IGHM)	0.08698	NR unit increase	Illumina [1671387] (imputed)	N
2239	chr2	216826913	216826913	rs200857348	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q35	MREG	rs200857348-?	NR	5E-10		0.981	[0.65-1.31] unit increase	Affymetrix [11100000] (imputed)	N
2239	chr2	216860549	216860550	rs3770549	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	2q35	MREG	rs3770549-?	NR	3E-6		0.161	[0.092-0.230] unit increase	Illumina [> 2500000] (imputed)	N
2239	chr2	216893636	216893637	rs1344694	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	2q35	NR	rs1344694-?	NR	5E-6		1.27	[1.15-1.41]	Illumina [463044]	N
2239	chr2	216898657	216898658	rs7590720	19581569	Treutlein J	2009-07-01	Arch Gen Psychiatry	Genome-wide association study of alcohol dependence.	Alcohol dependence	476 European ancestry cases, 1,358 European ancestry controls	1,024 European ancestry cases, 996 European ancestry controls	2q35	PECR	rs7590720-G	0.29	1E-8		1.35	[1.22-1.49]	Illumina [524396]	N
2240	chr2	216943289	216943290	rs1647768	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	2q35		rs1647768-G	NR	9E-6	(GLM)	1.4641	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2240	chr2	216960758	216960759	rs140150309	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	2q35	TMEM169	rs140150309-A	0.267	2E-11		0.04054		Illumina [243345]	N
2240	chr2	216982369	216982370	rs3815855	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	2q35		rs3815855-C	0.77	3E-9		0.09	unit decrease	Illumina [2093892] (imputed)	N
2240	chr2	216982369	216982370	rs3815855	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	2q35		rs3815855-C	0.77	4E-10		0.1	unit decrease	Illumina [2398641] (imputed)	N
2241	chr2	217125313	217125314	rs721774	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q35		rs721774-G	NR	5E-7		1.04269		Affymetrix, Illumina [62056310] (imputed)	N
2242	chr2	217208570	217208571	rs6756590	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	2q35	MARCH4	rs6756590-?	0.56	1E-6		1.14	[1.08-1.2]	Illumina [1246388] (imputed)	N
2242	chr2	217245078	217245079	rs62178591	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs62178591-T	0.08711	1E-8	(GSN)	0.01909	NR unit increase	Illumina [1671387] (imputed)	N
2242	chr2	217252412	217252413	rs1111341	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	2q35	SMARCAL1	rs1111341-?	NR	6E-10		0.003791	[0.0019-0.0057] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
2242	chr2	217267021	217267022	rs10193235	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q35	NR	rs10193235-?		4E-9	(Average across all tracts)			NR [8955960] (imputed)	N
2242	chr2	217306697	217306698	rs13411858	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	2q35	RPL37A, SMARCAL1	rs13411858-T	0.843	3E-8		5.57	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
2243	chr2	217325317	217325317	rs34380167	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	2q35	SMARCAL1, RPL37A	rs34380167-CCAAA	0.267138	1E-8		0.277371	[0.18-0.37] unit increase	Affymetrix [NR] (imputed)	N
2243	chr2	217325317	217325317	rs34380167	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q35	NR	rs34380167-?		9E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
2243	chr2	217330900	217330901	rs7590302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q35	NR	rs7590302-?		4E-10	(Average across all tracts)			NR [8955960] (imputed)	N
2243	chr2	217330900	217330901	rs7590302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q35	NR	rs7590302-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
2243	chr2	217330900	217330901	rs7590302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q35	NR	rs7590302-?		3E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
2243	chr2	217330900	217330901	rs7590302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q35	NR	rs7590302-?		2E-8	(Average across all tracts)			NR [8955960] (imputed)	N
2243	chr2	217330900	217330901	rs7590302	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q35	NR	rs7590302-?		2E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
2243	chr2	217332056	217332057	rs284532	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical thickness	22,163 European and African American ancestry individuals	22,363 European ancestry individuals	2q35	SMARCAL1	rs284532-?		3E-7	(Inferiortemporal)			Affymetrix, Illumina [NR] (imputed)	N
2243	chr2	217369185	217369186	rs998102	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q35	NR	rs998102-?		9E-11	(Average across all tracts)			NR [8955960] (imputed)	N
2243	chr2	217369754	217369755	rs35612822	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (early stage) in type 1 diabetes	555 European ancestry cases, 245 cases, 1,903 European ancestry controls, 690 controls	602 cases, 1,459 controls	2q35	NR	rs35612822-A	0.68	7E-6		1.24	[1.13-1.37]	Illumina [NR] (imputed)	N
2243	chr2	217372828	217372830	rs34851999	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q35	NR	rs34851999-?		2E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
2243	chr2	217384481	217384482	rs13015080	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	2q35	SMARCAL1	rs13015080-A	0.31	3E-6	(GEE model, both 3 and 6 months)	0.28	[0.16-0.40] unit decrease	Illumina [4253138] (imputed)	N
2243	chr2	217384481	217384482	rs13015080	26776603	Honne K	2016-01-18	Arthritis Res Ther	A longitudinal genome-wide association study of anti-tumor necrosis factor response among Japanese patients with rheumatoid arthritis.	Response to anti-TNF therapy in rheumatoid arthritis	31 Japanese ancestry mild cases, 282 Japanese ancestry moderate cases, 131 Japanese ancestry severe cases	NA	2q35	SMARCAL1	rs13015080-A	0.31	1E-6	(moderate and severe, GEE model, both 3 and 6 months)	0.3	[0.18-0.43] unit decrease	Illumina [4253138] (imputed)	N
2243	chr2	217402488	217402489	rs139739387	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q35	IGFBP5	rs139739387-A	0.98375	7E-10	(IGFBP5, 2685_21_2)	0.6083753	[0.42-0.8] unit increase	Illumina [> 1000000] (imputed)	N
2243	chr2	217409125	217409126	rs6757486	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q35	MARCH4, SMARCAL1, RPL37A	rs6757486-?		2E-12				NR [7428630] (imputed)	N
2243	chr2	217416702	217416703	rs56125329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q35		rs56125329-T	0.45	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
2243	chr2	217427624	217427625	rs1554715	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q35		rs1554715-G	0.44	9E-50		14.83	z score increase	Affymetrix [9061022] (imputed)	N
2243	chr2	217427624	217427625	rs1554715	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q35		rs1554715-G	0.44	1E-23		10.02	z score increase	Affymetrix [9061022] (imputed)	N
2243	chr2	217427624	217427625	rs1554715	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q35	NR	rs1554715-G	0.4228	1E-17				NR [9056863] (imputed)	N
2243	chr2	217427624	217427625	rs1554715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q35		rs1554715-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2243	chr2	217431560	217431561	rs60603116	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q35	NR	rs60603116-T	0.4223	2E-12				NR [9056863] (imputed)	N
2243	chr2	217431560	217431561	rs60603116	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 86)	19,670 European ancestry individuals	NA	2q35		rs60603116-?	NR	2E-15				NR [9705931] (imputed)	N
2244	chr2	217480228	217480229	rs10932669	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	2q35	NR	rs10932669-T	0.13	3E-6	(EA)	1.29	[1.16-1.44]	Affymetrix [7469170] (imputed)	N
2244	chr2	217481270	217481271	rs9288520	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer  (alcohol interaction)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	2q35	IGFB2	rs9288520-?	0.34	4E-11		1.33	[1.22-1.45]	NR [NR]	N
2244	chr2	217487708	217487709	rs111696008	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXPH2	5,359 Icelandic ancestry individuals	NA	2q35		rs111696008-A	0.02033	6E-13		0.478919	[0.35-0.61] unit decrease	Illumina [7506463] (imputed)	N
2244	chr2	217487708	217487709	rs111696008	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCHE	5,337 Icelandic ancestry individuals	NA	2q35		rs111696008-A	0.02033	1E-23		0.59792	[0.48-0.71] unit increase	Illumina [7506463] (imputed)	N
2244	chr2	217493754	217493755	rs1525608	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q35	NR	rs1525608-A	NR	6E-6	(GEE model)	0.40478	[0.23-0.58] unit decrease	NR [NR] (imputed)	N
2244	chr2	217506264	217506265	rs9341130	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	2q35	IGFBP2	rs9341130-G	0.16	4E-6	(male)	0.107	[0.062-0.152] unit increase	Illumina [6380737] (imputed)	N
2244	chr2	217506264	217506265	rs9341130	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	2q35	IGFBP2	rs9341130-G	0.16	4E-6	(male)	1.44	[0.83-2.05] unit increase	Illumina [6380737] (imputed)	N
2244	chr2	217506264	217506265	rs9341130	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	2q35	IGFBP2	rs9341130-G	0.16	2E-7	(male)	67.6	[42.32-92.88] unit increase	Illumina [6380737] (imputed)	N
2244	chr2	217516472	217516473	rs9341165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs9341165-G	0.01045	6E-9	(MT1H)	0.07847	NR unit increase	Illumina [1671387] (imputed)	N
2244	chr2	217529524	217529525	rs9341226	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q35	IGFBP5	rs9341226-?	NR	5E-6	(CE 16:1)	3.6938083	[2.1-5.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2244	chr2	217543727	217543728	rs11575194	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGFBP5	5,357 Icelandic ancestry individuals	NA	2q35		rs11575194-A	0.03262	2E-48		0.754534	[0.65-0.86] unit decrease	Illumina [7506463] (imputed)	N
2244	chr2	217543727	217543728	rs11575194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q35	IGFBP5	rs11575194-A	0.045	9E-12	(Oxysterol-binding protein-related protein 11, OSBPL11.12878.60.3)	0.42	[0.3-0.54] unit increase	Affymetrix [10572788] (imputed)	N
2244	chr2	217554212	217554213	rs2241193	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q35	IGFBP5	rs2241193-C	0.89	1E-7	(men)			Affymetrix, Illumina [2500000] (imputed)	N
2244	chr2	217575172	217575173	rs60656193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs60656193-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2245	chr2	217605924	217605925	rs1861631	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	IGFBP5, TNP1	rs1861631-?	NR	5E-7		0.019926043	[0.012-0.028] unit increase	Illumina [27896057] (imputed)	N
2245	chr2	217612320	217612321	rs7568039	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	2q35	IGFBP2	rs7568039-A	0.25	2E-19		0.122	[0.095-0.149] unit decrease	Illumina [at least 9558836] (imputed)	N
2245	chr2	217613284	217613285	rs8179795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q35		rs8179795-?	NR	4E-21				NR [~ 8900000] (imputed)	N
2245	chr2	217614583	217614584	rs6754292	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q35	AC007563.2	rs6754292-T	0.6446	2E-21		0.0188	[0.015-0.023] unit increase	Affymetrix [18391927] (imputed)	N
2245	chr2	217614729	217614730	rs6435952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	IGFBP5	rs6435952-A	0.1505	1E-14		0.0258	[0.019-0.032] unit increase	Affymetrix [19819130] (imputed)	N
2245	chr2	217614729	217614730	rs6435952	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	IGFBP5	rs6435952-A	0.1505	2E-10		0.0208	[0.014-0.027] unit increase	Affymetrix [19819130] (imputed)	N
2245	chr2	217619035	217619036	rs1548942	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	2q35		rs1548942-T	NR	2E-7		0.0148	[0.0095-0.0201] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
2245	chr2	217619035	217619036	rs1548942	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	2q35		rs1548942-T	0.15	5E-50		0.021	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
2245	chr2	217619035	217619036	rs1548942	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	2q35		rs1548942-T	0.15	6E-7		0.016	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
2245	chr2	217625522	217625523	rs13015993	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	2q35	IGFBP5	rs13015993-A	0.736	8E-11	(TSH - Males)	0.095	[0.066-0.124] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2245	chr2	217625522	217625523	rs13015993	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	2q35	IGFBP5	rs13015993-A	0.736	3E-15	(TSH)	0.078	[0.058-0.098] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2245	chr2	217625522	217625523	rs13015993	23408906	Porcu E	2013-02-07	PLoS Genet	A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function.	Thyroid hormone levels	up to 14,459 European ancestry females, up to 10,936 European ancestry males, up to 433 Old Order Amish females, up to 592 Old Order Amish males	NA	2q35	IGFBP5	rs13015993-A	0.736	2E-7	(TSH - Females)	0.069	[0.044-0.094] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2245	chr2	217625678	217625679	rs13020935	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2q35	IGFBP5, TNP1	rs13020935-A	0.720016450002426	3E-78		0.0957	[0.086-0.106] SD increase	Illumina [22400000] (imputed)	N
2245	chr2	217628086	217628087	rs6435953	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q35	AC007563.5	rs6435953-C	0.1621	2E-8		0.5067	[0.33-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2245	chr2	217628429	217628430	rs1861628	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	2q35	IGFBP5, TNP1	rs1861628-?	NR	6E-9		1.09	[1.05-1.12]	Illumina [13676411] (imputed)	N
2245	chr2	217628429	217628430	rs1861628	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	2q35	IGFBP5	rs1861628-T	0.27	4E-6	(EA)	0.05	[0.03-0.07] unit decrease	Illumina [up to 905285]	N
2245	chr2	217644851	217644852	rs9989901	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q35		rs9989901-A	0.480387	1E-12		0.0254498	[0.018-0.032] unit increase	NR [11722792] (imputed)	N
2245	chr2	217646522	217646523	rs72958213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q35	IGFBP5, TNP1	rs72958213-C		5E-8		0.177	unit increase	Affymetrix [at least 2696785] (imputed)	N
2245	chr2	217646554	217646555	rs10189682	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	2q35	IGFBP5, TNP1	rs10189682-?	NR	1E-9		0.02268	[0.015-0.03] unit increase novel	Illumina [6108953] (imputed)	N
2245	chr2	217652590	217652591	rs10932679	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q35	intergenic	rs10932679-T	0.189	6E-8	(EA, initial)	0.325	[0.21-0.44] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2245	chr2	217652590	217652591	rs10932679	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	2q35	intergenic	rs10932679-T	0.189	2E-8		0.226	[0.15-0.3] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
2245	chr2	217665414	217665415	rs1030065	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2q35	AC007563.3, AC007563.5	rs1030065-A	0.7006	7E-6		0.0575	[0.032-0.083] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2245	chr2	217665787	217665788	rs1548945	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q35	TNP1	rs1548945-T	0.4389	2E-34		0.0036	[0.003-0.0042] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2245	chr2	217665787	217665788	rs1548945	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q35	TNP1	rs1548945-T	0.4131	3E-29		0.0037	[0.0029-0.0045] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2245	chr2	217665787	217665788	rs1548945	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	2q35	TNP1	rs1548945-T	0.5221	4E-6		0.0031	[0.0017-0.0045] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2245	chr2	217665787	217665788	rs1548945	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	2q35	TNP1	rs1548945-C	0.56	2E-6		1.0397172	[1.02-1.06]	Affymetrix, Illumina [9585923] (imputed)	N
2245	chr2	217671348	217671349	rs2712169	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q35		rs2712169-G	0.42	9E-14				NR [NR] (imputed)	N
2245	chr2	217671348	217671349	rs2712169	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q35		rs2712169-G	0.42	4E-10		0.009	% increase	NR [NR] (imputed)	N
2245	chr2	217671348	217671349	rs2712169	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q35	NR	rs2712169-A	0.581138	4E-12		0.0470572	[0.034-0.061] unit increase	Affymetrix [17914406] (imputed)	N
2245	chr2	217674006	217674006	rs11281641	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q35	NR	rs11281641-ACACACT	0.422892	6E-9		0.0572846	[0.038-0.077] unit decrease	Affymetrix [21375087] (imputed)	N
2245	chr2	217674988	217674989	rs7587010	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	2q35	IGFBP5	rs7587010-T	0.545	9E-14		0.337	[0.16-0.51] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2245	chr2	217675323	217675326	rs3082828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q35		rs3082828-T	NR	5E-45		0.023	[0.02-0.026] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2245	chr2	217676627	217676628	rs35925637	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	2q35	IGFBP5, TNP1	rs35925637-?	NR	4E-9		0.02148	[0.014-0.029] unit decrease novel	Illumina [6108953] (imputed)	N
2245	chr2	217676680	217676681	rs72958256	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs72958256-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2245	chr2	217676900	217676901	rs2541384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	2q35		rs2541384-A	0.510956	1E-12		0.0205655	[0.015-0.026] unit increase	Illumina [13478778] (imputed)	N
2245	chr2	217681960	217681961	rs2014998	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q35	NR	rs2014998-A	0.26045399999999996	3E-8		0.00487105	[0.003-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
2245	chr2	217681960	217681961	rs2014998	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q35	NR	rs2014998-A	0.26045399999999996	1E-6		0.00521713	[0.0031-0.0073] unit increase	Affymetrix [16582965] (imputed)	N
2245	chr2	217681960	217681961	rs2014998	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q35	IGFBP5	rs2014998-?	NR	9E-6	(serotonin)	0.17251106	[0.096-0.249] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2245	chr2	217682778	217682779	rs2712184	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	2q35	IGFBP5	rs2712184-A	NR	8E-7		0.573	[0.35-0.8] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
2245	chr2	217682778	217682779	rs2712184	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	2q35	IGFBP5	rs2712184-A	0.58	1E-10		0.0053	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2245	chr2	217683835	217683836	rs2541381	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q35	AC007563.5	rs2541381-G	0.5058	1E-15		8.029	NR z score increase	Illumina [26237160] (imputed)	N
2245	chr2	217683835	217683836	rs2541381	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		2q35	IGFBP2	rs2541381-?	NR	2E-6				Affymetrix, Illumina [up to 10971307] (imputed)	N
2245	chr2	217703840	217703841	rs186081717	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1033 sp001695555 abundance in stool	5,959 Finnish ancestry individuals	NA	2q35		rs186081717-A	0.0263468	3E-8		0.0929448	[0.06-0.126] unit decrease	Illumina [7980478] (imputed)	N
2246	chr2	217714272	217714273	rs56142049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q35	NR	rs56142049-G	NR	5E-9		0.025	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
2246	chr2	217720467	217720468	rs10178069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs10178069-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2246	chr2	217733495	217733496	rs1922005	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	2q35	intergenic	rs1922005-?	NR	1E-8	(Pyruvate)			Illumina [~ 2500000] (imputed)	N
2246	chr2	217746277	217746278	rs1922003	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q35	NR	rs1922003-?	NR	6E-18				Affymetrix [NR]	N
2246	chr2	217748637	217748638	rs4674124	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	NR	rs4674124-T	0.1771	1E-11	(EA)	0.056	[0.04-0.072] unit decrease	Illumina [~ 11800000] (imputed)	N
2246	chr2	217803905	217803906	rs2542212	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	2q35		rs2542212-A	NR	2E-9		0.0331	[0.022-0.044] unit decrease	Affymetrix [6193476] (imputed)	N
2247	chr2	217856141	217856142	rs2705594	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2q35	intergenic	rs2705594-G	0.4498	9E-6		0.90928	NR	Affymetrix, Illumina [30341632] (imputed)	N
2247	chr2	217856965	217856966	rs1882419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q35		rs1882419-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2247	chr2	217861521	217861522	rs2888449	31289819	Fitzgerald KC	2019-09-01	Brain	Early complement genes are associated with visual system degeneration in multiple sclerosis.	Decreased low contrast letter acuity in multiple sclerosis	582 European and unknown ancestry individuals	253 European and unknown ancestry individuals	2q35	NR	rs2888449-C	0.29	3E-6		0.64	[0.55-0.74]	Illumina [5258576] (imputed)	N
2247	chr2	217863480	217863481	rs10932688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs10932688-?	NR	8E-21				NR [~ 8900000] (imputed)	N
2247	chr2	217863480	217863481	rs10932688	23704328	Fatemifar G	2013-05-23	Hum Mol Genet	Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.	Primary tooth development (number of teeth)	11,513 European ancestry individuals		2q35	NA	rs10932688-G	NR	3E-8		0.143	[0.092-0.194] unit increase	Illumina [2446724] (imputed)	N
2247	chr2	217875138	217875139	rs12165173	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	2q35	DIRC3, TNP1	rs12165173-?	NR	5E-6	(adjusted for dose, GFR & AST)	1.06	unit decrease (EA)	Illumina [610255]	N
2247	chr2	217878208	217878209	rs6435957	20195514	Pillas D	2010-02-26	PLoS Genet	Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.	Primary tooth development (number of teeth)	5,752 European ancestry related individuals	NA	2q35	intergenic	rs6435957-T	0.37	4E-7				Illumina [300766]	N
2247	chr2	217887799	217887800	rs12623304	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q35		rs12623304-G	0.24	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
2247	chr2	217893762	217893763	rs12998806	28171663	Huo D	2016-09-04	Hum Mol Genet	Genome-wide association studies in women of African ancestry identified 3q26.21 as a novel susceptibility locus for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor positive)	1795 African American cases, 99 African ancestry cases, 4,150 African American controls, 624 African ancestry controls	1093 African American cases, 2939 African American controls	2q35	intergenic	rs12998806-G	0.86	2E-8		1.34	[1.21-1.48]	Illumina [16147413] (imputed)	N
2247	chr2	217894402	217894403	rs12465515	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	2q35	IGFBP5, TNS1, TNP1, IGFBP2, DIRC3	rs12465515-C	0.34	3E-11		1.25	[1.18-1.33]	Affymetrix, Illumina [~ 4800000] (imputed)	N
2247	chr2	217894534	217894535	rs34909633	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	2q35		rs34909633-C	0.36	2E-8		1.24		NR [NR] (imputed)	N
2247	chr2	217894755	217894756	rs4491709	21931568	Geller F	2011-09-08	PLoS Genet	Genome-wide association study identifies four loci associated with eruption of permanent teeth.	Permanent tooth development	5,088 European ancestry females	2,994 European ancestry individuals, 161 individuals	2q35	TNP1	rs4491709-T	0.71	2E-14		0.102	[0.07-0.13] unit decrease	Illumina [521741]	N
2247	chr2	217895625	217895626	rs12621130	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q35	NR	rs12621130-G	0.2414	3E-10				NR [9056863] (imputed)	N
2247	chr2	217897540	217897541	rs13399995	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	2q35		rs13399995-C	0.36	4E-10		1.17		NR [NR] (imputed)	N
2247	chr2	217905831	217905832	rs13387042	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	2q35		rs13387042-?	NR	5E-23		0.868092	[0.84-0.9]	NR [682398]	N
2247	chr2	217905831	217905832	rs13387042	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	2q35	NR	rs13387042-A	0.51	9E-41		1.1363636	[1.11-1.16]	Affymetrix, Illumina [~ 14000000] (imputed)	N
2247	chr2	217905831	217905832	rs13387042	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2q35	NR	rs13387042-A	0.51	1E-55		1.1363636	[1.11-1.16]	Affymetrix, Illumina [~ 11600000] (imputed)	N
2247	chr2	217905831	217905832	rs13387042	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q35	intergenic	rs13387042-A	0.51	2E-57		1.14	[1.11-1.16]	Affymetrix, Illumina [~ 2600000] (imputed)	N
2247	chr2	217905831	217905832	rs13387042	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	2q35	intergenic	rs13387042-A	0.52	2E-10		1.16	[1.11-1.22]	Illumina [~ 296114]	N
2247	chr2	217905831	217905832	rs13387042	20872241	Li J	2010-09-26	Breast Cancer Res Treat	A combined analysis of genome-wide association studies in breast cancer.	Breast cancer	2,702 European ancestry female cases, 5,726 European ancestry controls	Up to 7,386 cases, 7,576 controls	2q35	intergenic	rs13387042-?	0.53	9E-6		1.18	[1.10-1.27]	Illumina [285984]	N
2247	chr2	217905831	217905832	rs13387042	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	2q35	intergenic	rs13387042-A	0.49	2E-10		1.21	[1.14-1.29]	Illumina [582886]	N
2247	chr2	217905831	217905832	rs13387042	19330030	Thomas G	2009-03-29	Nat Genet	A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1).	Breast cancer	1,145 European ancestry cases, 1,142 European ancestry controls	8,625 European ancestry cases, 9,657 European ancestry controls	2q35	intergenic	rs13387042-A	0.51	2E-8		1.25	[1.15-1.37] (Het)	Illumina [528173]	N
2247	chr2	217905831	217905832	rs13387042	17529974	Stacey SN	2007-05-27	Nat Genet	Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer.	Breast cancer	1,599 European ancestry cases, 11,546 European ancestry controls	2,954 European ancestry cases, 5,967 European ancestry controls, Up to 561 Japanese ancestry cases, Up to 565 Japanese ancestry control, Up to 422 African American cases, Up to 448 African American controls, Up to 418 Hispanic cases, Up to 422 Hispanic controls, Up to 148 cases, Up to 293 controls	2q35	intergenic	rs13387042-A	0.50	1E-13		1.2	[1.14-1.26]	Illumina [311524]	N
2247	chr2	217908984	217908985	rs4621152	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2q35	AC007557.1	rs4621152-C	NR	1E-8	(Gammaproteobacteria class)	0.29	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	2q35		rs4442975-T	NR	7E-32		0.1273	[0.11-0.15] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q35		rs4442975-G	NR	2E-28		1.1311	NR	Affymetrix [7846216] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	2q35	NR	rs4442975-?		5E-18		1.15	[NR]	NR [41502298] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q35		rs4442975-T	NR	2E-97		0.88	[0.87-0.89]	Affymetrix, Illumina [NR] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	IGFBP5	rs4442975-G	0.5	1E-95	(EA)	1.1235955	[1.11-1.15] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2247	chr2	217920768	217920769	rs4442975	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q35	NR	rs4442975-G	0.5	3E-6		1.0638298	[1.02-1.09] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
2247	chr2	217923604	217923605	rs17835044	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q35		rs17835044-T	0.25	2E-20		9.29	z score increase	Affymetrix [9061022] (imputed)	N
2247	chr2	217929019	217929020	rs62176284	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	2q35	NR	rs62176284-?	NR	8E-6				Illumina [8270200] (imputed)	N
2247	chr2	217938296	217938297	rs4672819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q35	NR	rs4672819-G	0.17051	2E-10		0.015513	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2247	chr2	217957698	217957699	rs72951831	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	2q35		rs72951831-G	NR	7E-11		1.268	[1.181-1.363]	Affymetrix [7846216] (imputed)	N
2247	chr2	217963059	217963060	rs34005590	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q35		rs34005590-A	NR	5E-41		0.82	[0.79-0.84]	Affymetrix, Illumina [NR] (imputed)	N
2247	chr2	217963059	217963060	rs34005590	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	IGFBP5	rs34005590-C	0.95	3E-41	(EA)	1.2195122	[1.16-1.27] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2248	chr2	217973447	217973448	rs2068218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q35		rs2068218-A	NR	3E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2248	chr2	217976590	217976591	rs6723845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q35	NR	rs6723845-C	NR	6E-10		0.021	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
2248	chr2	217976590	217976591	rs6723845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q35	NR	rs6723845-C	NR	3E-12		0.0237	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2248	chr2	217977582	217977583	rs10164944	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q35		rs10164944-?	NR	2E-6		1.1092421	[1.06248183715945-1.15806016445678]	Illumina [up to 7827597] (imputed)	N
2248	chr2	218016329	218016330	rs12623324	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q35	IGFBP5	rs12623324-?	NR	2E-6	(malate)	0.18470885	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2248	chr2	218018575	218018576	rs13385593	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q35	IGFBP5	rs13385593-?	NR	3E-8	(quinolinic acid)	0.65090054	[0.42-0.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
2248	chr2	218041882	218041883	rs72953532	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	NR	rs72953532-T	0.0319	2E-18	(EA)	0.1819	[0.14-0.22] unit decrease	Illumina [~ 11800000] (imputed)	N
2248	chr2	218070163	218070164	rs16857021	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q35		rs16857021-?	NR	5E-25		0.0289097	[0.023-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
2248	chr2	218081442	218081443	rs12477810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs12477810-?	NR	2E-28				NR [~ 8900000] (imputed)	N
2248	chr2	218092220	218092221	rs2216949	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q35	DIRC3-AS1	rs2216949-C	0.883021	1E-23		0.0284308	[0.023-0.034] unit decrease	NR [13737936] (imputed)	N
2248	chr2	218100995	218100996	rs2553033	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q35	DIRC3	rs2553033-G	0.171	8E-12	(AA)	0.061	[0.043-0.079] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
2248	chr2	218100995	218100996	rs2553033	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q35	DIRC3	rs2553033-G		2E-8				Affymetrix, Illumina [17972582] (imputed)	N
2248	chr2	218100995	218100996	rs2553033	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	2q35	DIRC3	rs2553033-G	0.172	3E-7	(AA)	0.056	[0.034-0.078] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
2248	chr2	218100995	218100996	rs2553033	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	2q35	DIRC3	rs2553033-G	0.169	3E-6	(AA)	0.068	[0.041-0.095] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
2249	chr2	218105859	218105860	rs56185026	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q35		rs56185026-?	NR	3E-19		0.0309343	[0.024-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
2249	chr2	218105859	218105860	rs56185026	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q35	DIRC3-AS1	rs56185026-T	0.901816	2E-11		0.0368631	[0.026-0.048] unit decrease	NR [17166351] (imputed)	N
2249	chr2	218105859	218105860	rs56185026	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q35	DIRC3-AS1	rs56185026-T	0.901457	3E-11	(women)	0.0520059	[0.037-0.067] unit decrease	NR [17166351] (imputed)	N
2249	chr2	218111700	218111701	rs2565688	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q35	NR	rs2565688-A	0.738683	2E-11		0.0746321	[0.053-0.096] unit increase	Affymetrix [21375087] (imputed)	N
2249	chr2	218122763	218122764	rs11684828	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q35	NR	rs11684828-G	0.254669	5E-9		0.0472609	[0.032-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
2249	chr2	218123647	218123648	rs2553026	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	intergenic	rs2553026-A	0.19	6E-8		0.056	[0.036-0.076] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
2249	chr2	218128151	218128152	rs1863190	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	2q35	DIRC3	rs1863190-T	0.76	5E-13		1.12	[1.08-1.15]	Affymetrix [84000000] (imputed)	N
2249	chr2	218132857	218132858	rs12622189	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q35	intergenic	rs12622189-A	0.7422	1E-35		0.0268	[0.023-0.031] unit increase	Affymetrix [18391927] (imputed)	N
2249	chr2	218146079	218146080	rs17181956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q35		rs17181956-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2249	chr2	218146079	218146080	rs17181956	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q35	TNP1	rs17181956-T	0.129	4E-9		0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2249	chr2	218146107	218146108	rs10221933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	2q35		rs10221933-C	NR	2E-14		0.1122	[0.084-0.141] unit decrease	Affymetrix, Illumina [25844227] (imputed)	N
2249	chr2	218146107	218146108	rs10221933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs10221933-?	NR	2E-24				NR [~ 8900000] (imputed)	N
2249	chr2	218165242	218165243	rs77119843	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	2q35	DIRC3	rs77119843-C	NR	5E-7	(BDRBASE, EA)	6.23	[3.8-8.66] unit increase	Illumina [NR] (imputed)	N
2249	chr2	218165242	218165243	rs77119843	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	2q35	DIRC3	rs77119843-C	NR	1E-6	(BDRPRED, EA)	2.23	[1.33-3.13] unit increase	Illumina [NR] (imputed)	N
2249	chr2	218196785	218196786	rs200179115	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	2q35	DIRC3	rs200179115-AG	0.991	4E-7		2.0790021	[1.56-2.76]	Affymetrix [28509962] (imputed)	N
2249	chr2	218209026	218209027	rs114396821	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q35	DIRC3	rs114396821-G	0.995	3E-6	(AA)	0.623	NR unit increase	Illumina [NR] (imputed)	N
2249	chr2	218217326	218217327	rs141034416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q35	DIRC3	rs141034416-T	0.998	2E-6	(AA)	0.181	unit increase	Illumina [NR] (imputed)	N
2249	chr2	218218645	218218646	rs6761655	30223776	Hwang LD	2018-09-17	BMC Genomics	Bivariate genome-wide association analysis strengthens the role of bitter receptor clusters on chromosomes 7 and 12 in human bitter taste.	Bitter taste perception	1,999 European ancestry individuals from 929 twin families	NA	2q35	NR	rs6761655-?		3E-8	(PROP paper)	0.246	[0.16-0.33] unit decrease	Illumina [4381914] (imputed)	N
2250	chr2	218236785	218236786	rs6724073	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2q35	DIRC3	rs6724073-C	0.264091813337205	2E-20		0.0525	[0.041-0.064] SD decrease	Illumina [22400000] (imputed)	N
2250	chr2	218236785	218236786	rs6724073	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	2q35	DIRC3	rs6724073-T	0.74	3E-10		0.045	[0.031-0.059] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
2250	chr2	218266438	218266439	rs66470855	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	2q35		rs66470855-?	NR	2E-8		0.046	[0.03-0.062] unit increase	Affymetrix [9906178] (imputed)	N
2250	chr2	218266438	218266439	rs66470855	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	2q35		rs66470855-?	NR	9E-10		0.06	[0.04-0.08] unit increase	Affymetrix [9906178] (imputed)	N
2250	chr2	218266438	218266438	rs772695095	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	2q35		rs772695095-T	NR	4E-12		1.459428	NR	Affymetrix [7846216] (imputed)	N
2250	chr2	218270809	218270810	rs1479575211	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	2q35		rs1479575211-?	NR	7E-7		0.7706		Illumina [up to 7574753] (imputed)	N
2250	chr2	218271718	218271719	rs6759952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs6759952-?	NR	6E-58				NR [~ 8900000] (imputed)	N
2250	chr2	218271718	218271719	rs6759952	23894154	Kohler A	2013-07-26	J Clin Endocrinol Metab	Genome-wide association study on differentiated thyroid cancer.	Thyroid cancer	690 European ancestry cases, 497 European ancestry controls	2,958 European ancestry cases, 3,727 European ancestry controls	2q35	DIRC3	rs6759952-T	0.43	6E-10		1.25	[1.16-1.34]	Illumina [572042]	N
2250	chr2	218271897	218271898	rs1351164	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q35	TNS1	rs1351164-T	0.4	9E-6		0.021	[0.0092-0.0328] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2250	chr2	218271897	218271898	rs1351164	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	TNS1	rs1351164-T	0.79	2E-14		0.034	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
2250	chr2	218280417	218280418	rs1118151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q35		rs1118151-G	NR	2E-19		0.0162	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2250	chr2	218284209	218284210	rs994532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q35		rs994532-G	0.673155	5E-10		0.0131685	[0.009-0.0173] unit decrease	Illumina [13479295] (imputed)	N
2250	chr2	218284209	218284210	rs994532	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	DIRC3	rs994532-?	NR	2E-16		0.02471463	[0.019-0.031] unit decrease	Illumina [27896057] (imputed)	N
2250	chr2	218284277	218284278	rs994533	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q35	TNS1	rs994533-C	0.331	1E-17		0.027	[0.021-0.033] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2250	chr2	218290047	218290048	rs10804260	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q35	NR	rs10804260-T	0.683039	6E-10		0.0650683	[0.045-0.086] unit increase	Affymetrix [21375087] (imputed)	N
2250	chr2	218292157	218292158	rs11693806	33527407	Truong T	2021-02-02	Int J Cancer	Multiethnic genome-wide association study of differentiated thyroid cancer in the EPITHYR consortium.	Differentiated thyroid cancer	1,554 European ancestry cases, 1,973 European ancestry controls	2,229 European ancestry cases, 2,059 European ancestry controls	2q35	NR	rs11693806-G	0.66	1E-10		0.7	[0.62-0.78]	Illumina [9673063] (imputed)	N
2250	chr2	218292157	218292158	rs11693806	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	NR	rs11693806-G	0.7288	3E-26	(EA)	0.0739	[0.06-0.088] unit decrease	Illumina [~ 11800000] (imputed)	N
2250	chr2	218292157	218292158	rs11693806	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	2q35	NR	rs11693806-C	0.319	2E-24		1.43	1.33-1.54	Illumina [7100000] (imputed)	N
2250	chr2	218293563	218293564	rs7594625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q35		rs7594625-G	NR	2E-36		0.017	[0.014-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2250	chr2	218294216	218294217	rs12990503	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	2q35	DIRC3	rs12990503-G	0.63	3E-10		1.38	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
2250	chr2	218294216	218294217	rs12990503	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	2q35	DIRC3	rs12990503-G	0.63	4E-9		1.34	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Thyroid cancer	1,054 European ancestry cases, 490,920 European ancestry controls, 361 East Asian ancestry cases, 178,362 East Asian ancestry controls	NA	2q35		rs16857609-T	NR	2E-13		0.3027	[0.22-0.38] unit increase	Affymetrix, Illumina [25845394] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q35		rs16857609-T	NR	2E-31		1.07	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	DIRC3	rs16857609-T	0.26	2E-25	(EA)	1.06	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	2q35	NR	rs16857609-T	0.26	2E-8		1.07	[1.03-1.10] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	2q35	NR	rs16857609-?	0.26	7E-6		1.04	[1.00-1.09] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	2q35	NR	rs16857609-T	0.26	1E-17		1.08	[1.06-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
2250	chr2	218296507	218296508	rs16857609	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	2q35	DIRC3	rs16857609-T	0.26	1E-15		1.08	[1.06-1.10]	Affymetrix, Illumina [~ 2600000] (imputed)	N
2250	chr2	218296731	218296732	rs16857611	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	2q35		rs16857611-T	NR	8E-7		1.0633773	NR	Affymetrix [7846216] (imputed)	N
2250	chr2	218306735	218306736	rs10084346	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q35	DIRC3	rs10084346-T	0.16	2E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
2250	chr2	218310339	218310340	rs966423	22267200	Gudmundsson J	2012-01-22	Nat Genet	Discovery of common variants associated with low TSH levels and thyroid cancer risk.	Thyroid cancer	27,758 European ancestry individuals	1,156 European ancestry cases, up to 42,617 European ancestry controls	2q35	DIRC3	rs966423-C	0.442	1E-9		1.34	[1.22-1.47]	Illumina [~ 16000000] (imputed)	N
2250	chr2	218312597	218312598	rs2618152	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q35	NR	rs2618152-?	NR	5E-11	(male)	0.2567	[0.18-0.33] unit increase	Affymetrix [7794483] (imputed)	N
2250	chr2	218312597	218312598	rs2618152	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q35	NR	rs2618152-?	NR	3E-17		0.20922	[0.16-0.26] unit increase	Affymetrix [7794483] (imputed)	N
2250	chr2	218312597	218312598	rs2618152	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q35	NR	rs2618152-?	NR	1E-7	(female)	0.14289	[0.09-0.196] unit increase	Affymetrix [7794483] (imputed)	N
2250	chr2	218314252	218314253	rs11689435	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	2q35	DIRC3	rs11689435-T		4E-6		0.2941	unit increase	Illumina [5767231] (imputed)	N
2250	chr2	218353390	218353391	rs66701441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	DIRC3	rs66701441-C	NR	1E-9		0.0219715	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
2250	chr2	218353390	218353391	rs66701441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	DIRC3	rs66701441-C	NR	2E-9		0.0216768	[0.015-0.029] unit increase	Affymetrix [319769] (imputed)	N
2250	chr2	218357381	218357382	rs12475467	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	2q35	RALGPS2, ANGPTL1	rs12475467-?		4E-8				NR [7428630] (imputed)	N
2250	chr2	218359845	218359846	rs7587286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	DIRC3	rs7587286-T	NR	1E-9		0.0182112	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
2250	chr2	218359845	218359846	rs7587286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	DIRC3	rs7587286-T	NR	4E-9		0.0176875	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
2250	chr2	218359845	218359846	rs7587286	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q35	DIRC3	rs7587286-T	NR	1E-8		0.0174006	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
2250	chr2	218362829	218362830	rs62175497	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DIRC3	rs62175497-?	NR	3E-9	(female)	1.54261	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2251	chr2	218374065	218374066	rs2373072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	DIRC3	rs2373072-T	NR	3E-13		0.0234144	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
2251	chr2	218374065	218374066	rs2373072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	DIRC3	rs2373072-T	NR	8E-13		0.0229228	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
2251	chr2	218374065	218374066	rs2373072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q35	DIRC3	rs2373072-T	NR	5E-12		0.0223598	[0.016-0.029] unit increase	Affymetrix [321169] (imputed)	N
2251	chr2	218392554	218392555	rs2373078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	DIRC3	rs2373078-T	NR	5E-10		0.0287965	[0.02-0.038] unit increase	Affymetrix [321114] (imputed)	N
2251	chr2	218392554	218392555	rs2373078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q35	DIRC3	rs2373078-T	NR	3E-11		0.0309189	[0.022-0.04] unit increase	Affymetrix [321169] (imputed)	N
2251	chr2	218392554	218392555	rs2373078	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q35	NR	rs2373078-T	0.0999	1E-13		0.0215	[0.016-0.027] unit increase	NR [~ 27400000] (imputed)	N
2251	chr2	218392554	218392555	rs2373078	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	2q35	NR	rs2373078-T	0.1	4E-8		0.0158	[0.01-0.021] unit increase	NR [~ 27400000] (imputed)	N
2251	chr2	218393388	218393389	rs7579468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	DIRC3	rs7579468-A	NR	3E-13		0.0335714	[0.025-0.043] unit increase	Affymetrix [319769] (imputed)	N
2251	chr2	218393388	218393389	rs7579468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	DIRC3	rs7579468-A	NR	2E-13		0.0337542	[0.025-0.043] unit increase	Affymetrix [319769] (imputed)	N
2251	chr2	218393388	218393389	rs7579468	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q35	NR	rs7579468-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2251	chr2	218393388	218393389	rs7579468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q35		rs7579468-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2251	chr2	218395144	218395145	rs1002353	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	2q35	DIRC3	rs1002353-?	NR	6E-7	(Pleasant Difference Startle Scores)	0.093	[0.056-0.13] unit increase	Illumina [527829]	N
2251	chr2	218466220	218466221	rs1367187	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	2q35	DIRC3	rs1367187-C		7E-9		0.026	[0.016-0.036] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
2251	chr2	218466220	218466221	rs1367187	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	2q35	DIRC3	rs1367187-C		3E-7	(EA)	0.027	[0.017-0.037] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
2251	chr2	218467036	218467037	rs934237	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q35	DIRC3	rs934237-A	0.79	2E-11		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
2251	chr2	218472171	218472172	rs1549733	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	2q35	DIRC3	rs1549733-T	0.21	8E-8	(EA)	0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
2251	chr2	218472171	218472172	rs1549733	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	2q35	DIRC3	rs1549733-T	0.21	4E-9		0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
2252	chr2	218514963	218514964	rs34183224	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q35	DIRC3	rs34183224-?	NR	4E-12		0.9087	[0.65-1.17] unit increase	Affymetrix [11100000] (imputed)	N
2252	chr2	218523161	218523162	rs6435999	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	intergenic	rs6435999-A	0.64	7E-7		0.041	[0.025-0.057] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
2252	chr2	218529842	218529843	rs140625707	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		DIRC3	rs140625707-C	NR	3E-18		1.06	[1.05-1.07]	Affymetrix [9869154] (imputed)	N
2252	chr2	218530678	218530679	rs62175364	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs62175364-A	NR	1E-8		1.0798		Affymetrix [9869154] (imputed)	N
2252	chr2	218533339	218533340	rs1430128	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	2q35	DIRC3	rs1430128-?	NR	8E-6		1.463883	[1.238378-1.730452]	Illumina [at least 4756772] (imputed)	N
2252	chr2	218575928	218575929	rs727511	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs727511-?	NR	1E-30				NR [~ 8900000] (imputed)	N
2252	chr2	218580549	218580550	rs10168801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q35		rs10168801-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2252	chr2	218601710	218601711	rs62182131	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q35	DIRC3	rs62182131-G	0.918847	6E-16		0.02726	[0.021-0.034] unit increase	NR [13737936] (imputed)	N
2252	chr2	218604355	218604356	rs4294980	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	DIRC3	rs4294980-A	0.7894	2E-10		0.0183	[0.013-0.024] unit increase	Affymetrix [19819130] (imputed)	N
2252	chr2	218604355	218604356	rs4294980	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	DIRC3	rs4294980-A	0.7894	4E-10		0.0179	[0.012-0.024] unit increase	Affymetrix [19819130] (imputed)	N
2252	chr2	218604355	218604356	rs4294980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs4294980-?	NR	4E-14				NR [~ 8900000] (imputed)	N
2252	chr2	218608732	218608733	rs76018285	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q35	DIRC3	rs76018285-A	0.9417	2E-13		0.0304	[0.022-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
2252	chr2	218615135	218615136	rs13392670	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q35		rs13392670-?	NR	4E-12		0.0271954	[0.019-0.035] unit increase	Affymetrix [20259828] (imputed)	N
2252	chr2	218616632	218616633	rs1864439	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q35	NR	rs1864439-?	NR	2E-7		0.04093311	[0.026-0.056] unit increase	Illumina [34656550] (imputed)	N
2253	chr2	218653589	218653590	rs16858224	30552173	Aterido A	2018-12-14	Ann Rheum Dis	Genetic variation at the glycosaminoglycan metabolism pathway contributes to the risk of psoriatic arthritis but not psoriasis.	Psoriatic arthritis	744 Spanish ancestry cases, 1,454 Spanish ancestry controls	1,430 cases, 1,417 controls	2q35	NR	rs16858224-?	NR	3E-6		4.67	[NR] z-score decrease	Illumina [1387382] (imputed)	N
2253	chr2	218667371	218667372	rs3791979	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	2q35	TNS1	rs3791979-?	NR	2E-9				Affymetrix [up to 7325140] (imputed)	N
2253	chr2	218667371	218667372	rs3791979	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q35	TNS1	rs3791979-?	NR	4E-9		0.0788	[0.053-0.105] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
2253	chr2	218667371	218667372	rs3791979	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q35	TNS1	rs3791979-T	0.396	1E-9		0.081	[0.056-0.106] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2253	chr2	218667371	218667372	rs3791979	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q35	TNS1	rs3791979-T	0.3952	2E-17		0.117	[0.088-0.146] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2253	chr2	218667835	218667836	rs3088214	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q35		rs3088214-G	0.42	9E-12		6.83	z score increase	Affymetrix [9061022] (imputed)	N
2253	chr2	218668731	218668732	rs1063281	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q35	TNS1	rs1063281-T	0.6	1E-12		0.2	[0.14-0.26] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2253	chr2	218668731	218668732	rs1063281	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q35	TNS1	rs1063281-C		2E-10		0.247	unit increase	Affymetrix [at least 2696785] (imputed)	N
2253	chr2	218668731	218668732	rs1063281	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q35	TNS1	rs1063281-C		5E-6	(EA)	0.18	unit increase	Affymetrix [at least 2696785] (imputed)	N
2253	chr2	218668731	218668732	rs1063281	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	2q35	TNS1	rs1063281-C		5E-6		0.163	unit increase	Affymetrix [at least 2696785] (imputed)	N
2253	chr2	218668731	218668732	rs1063281	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q35	TNS1	rs1063281-C		1E-12		0.17	unit increase	Affymetrix [at least 2696785] (imputed)	N
2253	chr2	218669224	218669225	rs61741262	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q35	TNS1	rs61741262-T	0.893	2E-8		0.062	[0.04-0.084] unit increase	Affymetrix [7947838] (imputed)	N
2253	chr2	218670770	218670771	rs2552520	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q35	NR	rs2552520-C	0.3993	2E-11				NR [9056863] (imputed)	N
2253	chr2	218673893	218673897	rs66678720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q35		rs66678720-G	NR	9E-11		0.0151	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
2253	chr2	218673893	218673897	rs66678720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q35		rs66678720-G	NR	9E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2253	chr2	218675532	218675533	rs1035673	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2q35	TNS1	rs1035673-?	NR	7E-12		0.09	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
2253	chr2	218677585	218677586	rs76043829	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	2q35	TNS1	rs76043829-A		6E-7		1.2133	[1.14-1.29]	Illumina [up to 4972397] (imputed)	N
2253	chr2	218680528	218680529	rs2161967	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q35	TNS1	rs2161967-T	0.463355	2E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
2253	chr2	218680528	218680529	rs2161967	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q35	TNS1	rs2161967-?	NR	7E-11		0.0326225	[0.023-0.042] unit decrease	Illumina [4804024] (imputed)	N
2253	chr2	218680569	218680570	rs2161969	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q35	NR	rs2161969-A	0.47	1E-8			[NR]	Affymetrix [9886854] (imputed)	N
2253	chr2	218680569	218680570	rs2161969	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	2q35	NR	rs2161969-A	0.47	3E-7		0.93	[0.9-0.95]	Affymetrix [9886854] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q35		rs2571445-A	0.41	4E-15		7.85	z score increase	Affymetrix [9061022] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q35		rs2571445-G	NR	1E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q35	NR	rs2571445-A	0.3953	1E-17				NR [9056863] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	33909500	Moll M	2021-04-28	Am J Physiol Lung Cell Mol Physiol	A Systematic Analysis of Protein-altering Exonic Variants in Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	up to 31,465 European ancestry cases, up to 203,688 European ancestry controls, up to 1,413 African ancestry cases, up to 6,080 African ancestry controls, up to 287 East Asian ancestry cases, up to 7,484 East Asian ancestry controls, up to 61 Hispanic cases, up to 613 Hispanic controls	NA	2q35	TNS1	rs2571445-A	0.39	4E-13		1.08	[1.05 -1.1]	Illumina [at least 109036]	N
2253	chr2	218683153	218683154	rs2571445	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q35	NR	rs2571445-A	0.39	3E-9		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q35	NR	rs2571445-A	0.39	8E-9			[NR]	Affymetrix [9886854] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	2q35	NR	rs2571445-A	0.39	2E-9		1.08	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q35	TNS1	rs2571445-G	0.605059	4E-67		0.03959148	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q35	TNS1	rs2571445-G	0.605084	1E-44		0.03184626	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q35	TNS1	rs2571445-G	0.605089	7E-45		0.03191904	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q35	TNS1	rs2571445-?		6E-9				NR [7428630] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q35	TNS1	rs2571445-A	0.39	3E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	TNS1	rs2571445-A	0.3971	5E-20		0.022	[0.017-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	TNS1	rs2571445-A	0.3971	3E-16		0.0199	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	TNS1	rs2571445-A	0.3971	7E-33		0.0285	[0.024-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q35		rs2571445-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q35		rs2571445-?	NR	6E-31				NR [~ 8900000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q35	TNS1	rs2571445-A	0.3689	1E-9		0.2053	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q35	TNS1	rs2571445-A	0.3915	2E-17		0.114	[0.086-0.142] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q35	TNS1	rs2571445-A	0.3895	2E-12		0.037	[0.027-0.047] unit increase	Affymetrix [at least 7947838] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q35	TNS1	rs2571445-A	0.3897	1E-12		0.041	[0.03-0.052] unit increase	NR [8041861] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	2q35	TNS1	rs2571445-G	0.6001	1E-6		0.033	[0.019-0.047] unit increase	Affymetrix [27624732] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	2q35	TNS1	rs2571445-G	0.6001	5E-8		0.037	[0.023-0.051] unit increase	Affymetrix [27624732] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	2q35	TNS1	rs2571445-G	0.6	2E-10		0.043	[0.029-0.057] unit increase	Affymetrix [up to 27624732] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	2q35	TNS1	rs2571445-G	0.6054	5E-30		0.04130776	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q35	TNS1	rs2571445-G	0.6054	1E-17		0.03139903	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q35	TNS1	rs2571445-G	0.6054	2E-18		0.03204766	[0.025-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	2q35	TNS1	rs2571445-G	NR	3E-8		0.109	[0.07-0.148] unit decrease	Affymetrix [28509962] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2q35	TNS1	rs2571445-?	NR	8E-9	(FEV1, Ever-smoking)			NR [~ 2500000] (imputed)	N
2253	chr2	218683153	218683154	rs2571445	20010834	Repapi E	2009-12-13	Nat Genet	Genome-wide association study identifies five loci associated with lung function.	Pulmonary function	20,288 European ancestry individuals	up to 54,276 European ancestry individuals	2q35	TNS1	rs2571445-G	0.60	1E-12	(FEV1)	0.035	[0.025-0.045] s.d. increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2253	chr2	218694295	218694296	rs6729330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q35		rs6729330-?	NR	7E-19				NR [~ 8900000] (imputed)	N
2253	chr2	218695101	218695102	rs3796028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q35	TNS1	rs3796028-A	0.354253	2E-19		0.021099849	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2253	chr2	218695101	218695102	rs3796028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	TNS1	rs3796028-A	0.35426	9E-20		0.02125635	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2253	chr2	218704673	218704674	rs1122986	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q35	Intergenic	rs1122986-?		9E-6		1.03	[1.02-1.04]	Illumina [7645193] (imputed)	N
2253	chr2	218723454	218723455	rs6436017	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q35	NR	rs6436017-G	0.5042	3E-10	(EA)	0.0399	[0.028-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
2253	chr2	218729864	218729865	rs3791950	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	2q35	TNS1	rs3791950-A	0.89	2E-6		0.061	[0.036-0.086] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
2253	chr2	218733964	218733965	rs112941127	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q35	TNS1	rs112941127-A	0.032	3E-8		0.108	[0.069-0.147] unit decrease	Affymetrix [7947838] (imputed)	N
2253	chr2	218736291	218736292	rs2042542	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Hip bone mineral content accrual during adolescent growth spurt	125 women, 133 men	NA	2q35	NR	rs2042542-G	0.33	1E-5	(Female)	0.54	[0.3-0.78] g increase	Illumina [509842]	N
2253	chr2	218753779	218753780	rs116819734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs116819734-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2254	chr2	218782539	218782540	rs28403309	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2q35		rs28403309-C	0.362795015	4E-8		1.0555881	[1.035439715-1.076128671]	Illumina [8919992] (imputed)	N
2254	chr2	218783531	218783532	rs16858462	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q35		rs16858462-C	NR	4E-8		0.0738	[0.048-0.1] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2254	chr2	218784530	218784531	rs2288176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q35		rs2288176-A	0.128122728	4E-8		0.07590275	[0.049-0.103] unit increase	Illumina [13429769] (imputed)	N
2254	chr2	218795355	218795356	rs1427669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	TNS1	rs1427669-G	0.22632	1E-9		0.01631795	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2254	chr2	218795355	218795356	rs1427669	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q35	TNS1	rs1427669-G	0.226277453586879	4E-7		0.0032665	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
2254	chr2	218798644	218798645	rs4672862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q35		rs4672862-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2254	chr2	218829526	218829527	rs13013766	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	2q35	TNS1, CXCR2P1	rs13013766-C	0.11	2E-7		0.37	unit decrease	Illumina [5600000] (imputed)	N
2254	chr2	218864774	218864775	rs62182229	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q35	TNS1	rs62182229-C	0.00943842678496168	8E-6	(C_Gammaproteobacteria_HB)	1.4556	[0.81-2.1] unit decrease	Illumina [7711310] (imputed)	N
2254	chr2	218878317	218878318	rs10932738	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q35	TNS1	rs10932738-T	0.247	4E-6		0.0378	[0.022-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2255	chr2	218902326	218902327	rs144670711	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	2q35	RUFY4	rs144670711-C	0.0046	8E-10		0.1702453	[0.12-0.22] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218916290	218916291	rs112541215	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	2q35		rs112541215-A	0.08	5E-6		3.01	[1.88-4.84]	Illumina [7989272] (imputed)	N
2255	chr2	218925525	218925526	rs149209947	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q35	CXCR2P1, RUFY4	rs149209947-C	0.0298	3E-6		0.1047	[0.061-0.148] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2255	chr2	218934358	218934359	rs55703230	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2q35	NR	rs55703230-C	0.989316	6E-6		0.347	[0.2-0.5] unit decrease	NR [9260588] (imputed)	N
2255	chr2	218936620	218936621	rs4076099	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	2q35	NR	rs4076099-T	0.2689	9E-7		1.3693	[0.82-1.92] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
2255	chr2	218969715	218969716	rs113535871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q35		rs113535871-C	0.493698	6E-12		0.015333657	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q35		rs55799208-A	NR	1E-75		0.4002	[0.36-0.44] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q35		rs55799208-A	NR	7E-99		0.4583	[0.42-0.5] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	2q35		rs55799208-A	NR	2E-13		0.1356	[0.1-0.172] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	CXCR2	rs55799208-A	0.00297999999999998	1E-95		0.41964602	[0.38-0.46] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q35	CXCR2	rs55799208-A	0.00297800000000004	9E-74		0.3678503	[0.33-0.41] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35	CXCR2	rs55799208-A	0.00297899999999995	5E-127		0.4859405	[0.45-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q35	CXCR2	rs55799208-A	0.00298900000000002	1E-27		0.22092772	[0.18-0.26] unit increase	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35	CXCR2	rs55799208-A	0.00297800000000004	8E-66		0.3472778	[0.31-0.39] unit increase	Affymetrix [93095623] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs55799208-G	0.997167	7E-110				Affymetrix, Illumina [24649327] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q35	NR	rs55799208-G	0.997151	3E-112		0.398729	[0.36-0.43] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs55799208-G	0.997133	6E-143				Affymetrix, Illumina [23114412] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q35	NR	rs55799208-G	0.997114	2E-143		0.465154	[0.43-0.5] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs55799208-G	0.99709	3E-20				Affymetrix, Illumina [19905671] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	2q35	NR	rs55799208-G	0.997046	4E-23		0.188951	[0.15-0.23] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	6E-32		0.4224498	[0.35-0.49] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	2E-41		0.4845187	[0.41-0.55] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	4E-42		0.4883838	[0.42-0.56] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	3E-25		0.3710271	[0.3-0.44] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	7E-42		0.4864247	[0.42-0.56] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	3E-40		0.4780301	[0.41-0.55] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	5E-11		0.2343691	[0.16-0.3] unit increase	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	3E-20		0.3287534	[0.26-0.4] unit increase	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	1E-20		0.3327092	[0.26-0.4] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	218999981	218999982	rs55799208	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q35	CXCR2	rs55799208-A	0.0029	8E-42		0.4863582	[0.42-0.56] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219000229	219000230	rs10201766	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35	CXCR2	rs10201766-T	7.09999999999988E-4	4E-9		0.24393822	[0.16-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	2q35		rs61733609-?	NR	1E-21		0.516302	[0.41-0.62] unit decrease	NR [9800000] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	2q35		rs61733609-?	NR	4E-28		0.592923	[0.49-0.7] unit decrease	NR [9800000] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	CXCR2	rs61733609-A	4.7699999999995E-4	3E-14		0.4887715	[0.36-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q35	CXCR2	rs61733609-A	4.7699999999995E-4	5E-14		0.4849297	[0.36-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35	CXCR2	rs61733609-A	4.7699999999995E-4	6E-21		0.60466135	[0.48-0.73] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219000266	219000267	rs61733609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35	CXCR2	rs61733609-A	4.7699999999995E-4	1E-11		0.43528566	[0.31-0.56] unit increase	Affymetrix [93095623] (imputed)	N
2255	chr2	219010145	219010146	rs11676348	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q35	CXCR2	rs11676348-?	NR	2E-11	(subset analysis)			Illumina [130052]	N
2255	chr2	219010145	219010146	rs11676348	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q35	IL8RA, SLC11A1, IL8RB, AAMP, ARPC	rs11676348-T	0.49	1E-10		1.07	[1.03-1.11]	Affymetrix, Illumina [~ 1100000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	2q35		rs114050631-C	0.989	4E-16				Affymetrix [10369434] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	2q35		rs114050631-C	0.989	1E-9				Affymetrix [10369434] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	NR	rs114050631-T	0.011258	1E-29		0.12755574	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q35		rs114050631-T	0.011253	4E-28		0.12339428	[0.1-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35		rs114050631-T	0.011255	1E-39		0.14890948	[0.13-0.17] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q35		rs114050631-T	0.0112679999999999	2E-31		0.13175797	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35		rs114050631-T	0.011255	3E-16		0.09238325	[0.07-0.115] unit increase	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q35		rs114050631-T	0.011244	2E-9		0.06876847	[0.046-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q35		rs114050631-?	NR	8E-35				NR [~ 8900000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0107	4E-13		0.1411712	[0.1-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	3E-17		0.1645126	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	5E-18		0.1685255	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	8E-13		0.1385776	[0.1-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	7E-18		0.1674122	[0.13-0.21] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	5E-16		0.1580557	[0.12-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	7E-10		0.1189524	[0.081-0.157] unit increase	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	1E-9		0.116977	[0.079-0.155] unit increase	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	7E-14		0.1449697	[0.11-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219020957	219020958	rs114050631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q35	intergenic	rs114050631-T	0.0106	2E-17		0.1653164	[0.13-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2255	chr2	219021012	219021013	rs151059019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	2q35		rs151059019-C	0.029662	7E-39		0.142179	[0.12-0.16] unit decrease	Illumina [13479091] (imputed)	N
2255	chr2	219021012	219021013	rs151059019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	2q35		rs151059019-C	0.029836	7E-39		0.194152	[0.16-0.22] unit decrease	Illumina [13467171] (imputed)	N
2255	chr2	219021012	219021013	rs151059019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	2q35	NR	rs151059019-T	0.982209	1E-19		0.156783	[0.12-0.19] SD units increase	Affymetrix, Illumina [16710636] (imputed)	N
2256	chr2	219022909	219022910	rs13410318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35	CXCR1	rs13410318-G	0.479294	5E-9		0.013059996	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219026697	219026698	rs16858768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q35	CXCR1	rs16858768-C	0.00286699999999995	1E-23		0.21128699	[0.17-0.25] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219029107	219029108	rs2234671	29608535	Kuehn MH	2018-03-30	J Neuroophthalmol	Genetic Survey of Adult-Onset Idiopathic Intracranial Hypertension.	Idiopathic intracranial hypertension	63 European ancestry cases, 21 African American cases, 4 Native American cases, 1 Asian cases, 6 cases, 61 European ancestry controls, 21 African American controls, 3 Native American controls, 1 Asian controls, 9 controls	NA	2q35	CXCR1	rs2234671-?		5E-7				Illumina [301908]	N
2256	chr2	219039822	219039823	rs143014663	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q35	CXCR1	rs143014663-A	0.04	2E-6	(African American)	0.52	0.31-0.74 unit increase	Illumina [NR] (imputed)	N
2256	chr2	219062000	219062001	rs78107966	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	2q35	CXCR1, ARPC2	rs78107966-?	NR	3E-11		0.03798	[0.027-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
2256	chr2	219062000	219062001	rs78107966	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Neutrophil count	62,076 Japanese ancestry individuals	NA	2q35	CXCR1, ARPC2	rs78107966-?	NR	4E-13		0.05547	[0.041-0.07] unit decrease novel	Illumina [6108953] (imputed)	N
2256	chr2	219068491	219068492	rs35870709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q35	HMGB1P9	rs35870709-G	0.413315	4E-18		0.026639635	[0.021-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219069805	219069806	rs191597583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	78,744 East Asian ancestry individuals	NA	2q35	NR	rs191597583-A	0.9851	1E-19		0.2025	[0.16-0.25] SD units increase	Affymetrix, Illumina [16289093] (imputed)	N
2256	chr2	219075842	219075843	rs62182760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q35		rs62182760-G	0.033855	1E-10		0.040534846	[0.028-0.053] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219075842	219075843	rs62182760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q35		rs62182760-G	0.033848	1E-11		0.04237822	[0.03-0.055] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219081296	219081297	rs13403276	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	ARPC2	rs13403276-G	0.027	7E-6	(Diet carbohydrate )	0.03	[NR] g/d increase	Illumina [899892]	N
2256	chr2	219081296	219081297	rs13403276	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	ARPC2	rs13403276-G	0.027	3E-6	(Energy intake )	0.03	[NR] kcal/d increase	Illumina [899892]	N
2256	chr2	219084532	219084533	rs6733051	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	ARPC2	rs6733051-A	0.01	2E-6	(BMR RQ)	0.04	[NR] unit increase	Illumina [899892]	N
2256	chr2	219093933	219093934	rs17572109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q35		rs17572109-A	NR	1E-40		0.0368	[0.031-0.042] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q35		rs17572109-G	0.766	1E-14				Affymetrix [10369434] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q35		rs17572109-G	0.766	1E-23				Affymetrix [10369434] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q35	ARPC2	rs17572109-A	0.233614	1E-74		0.065179005	[0.058-0.072] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q35	ARPC2	rs17572109-A	0.233582	4E-51		0.040478367	[0.035-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q35	ARPC2	rs17572109-A	0.233592	3E-34		0.033188257	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs17572109-A	0.223373	3E-66				Affymetrix, Illumina [24588908] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q35	NR	rs17572109-A	0.232031	6E-70		0.038804	[0.035-0.043] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs17572109-G	0.77535	4E-53				Affymetrix, Illumina [17210439] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q35	NR	rs17572109-G	0.767165	5E-57		0.036532	[0.032-0.041] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q35	ARPC2	rs17572109-A	0.2319	6E-26		0.04532296	[0.037-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q35	ARPC2	rs17572109-A	0.2317	7E-19		0.0387835	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219093933	219093934	rs17572109	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q35	ARPC2	rs17572109-A	0.2319	4E-15		0.03402066	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219099483	219099484	rs10932765	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	White blood cell count	16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals	NA	2q35	ARPC2	rs10932765-?	NR	9E-9		0.0106	[0.0069-0.0143] unit decrease	Illumina [NR] (imputed)	N
2256	chr2	219109881	219109882	rs17462354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q35	ARPC2	rs17462354-G	0.071047	5E-16		0.035851628	[0.027-0.045] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219112955	219112956	rs13392177	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	2q35	APRC2, GPBAR1, HMG1L9	rs13392177-C	NR	5E-6		2.3	[1.60-3.40]	Illumina [2017629] (imputed)	N
2256	chr2	219115107	219115108	rs6736362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs6736362-T	0.550401	2E-29				Affymetrix, Illumina [23467995] (imputed)	N
2256	chr2	219115107	219115108	rs6736362	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q35	NR	rs6736362-T	0.559146	6E-32		0.022174	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2256	chr2	219115107	219115108	rs6736362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q35		rs6736362-?	NR	2E-41				NR [~ 8900000] (imputed)	N
2256	chr2	219121662	219121663	rs11677953	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q35	GPBAR1	rs11677953-G	0.596809	2E-9		0.0111507	[0.0075-0.0148] unit decrease	NR [13737936] (imputed)	N
2256	chr2	219121662	219121663	rs11677953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs11677953-?	NR	6E-10				NR [~ 8900000] (imputed)	N
2256	chr2	219121662	219121663	rs11677953	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q35	NR	rs11677953-?	NR	3E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2256	chr2	219123042	219123043	rs28665899	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q35		rs28665899-T	0.43	2E-8		5.62	z score increase	Affymetrix [9061022] (imputed)	N
2256	chr2	219124221	219124222	rs3731859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q35	GPBAR1	rs3731859-A	0.561678	1E-24		0.023144657	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219124920	219124921	rs13003334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	GPBAR1	rs13003334-A	0.561781	5E-14		0.016930208	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219124920	219124921	rs13003334	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q35	GPBAR1	rs13003334-T	0.438206	2E-23		0.022228187	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219130513	219130514	rs1079204	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	2q35	CXCR2, AAMP, CXCR1	rs1079204-A	0.0378	2E-6		8.4526	[NR] unit increase	Illumina [1200000] (imputed)	N
2256	chr2	219132730	219132731	rs4674279	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q35	AAMP	rs4674279-G	0.595486	6E-24		0.00518116	[0.0042-0.0062] unit decrease	Affymetrix [13995440] (imputed)	N
2256	chr2	219133417	219133418	rs150733595	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q35		rs150733595-C	NR	3E-16		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2256	chr2	219134949	219134950	rs13419763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35	AAMP	rs13419763-T	0.56265	1E-14		0.017334167	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219134949	219134950	rs13419763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	2q35	AAMP	rs13419763-T	0.562611	2E-12		0.01594167	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2256	chr2	219136888	219136890	rs3834139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q35		rs3834139-T	NR	1E-20		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2256	chr2	219138169	219138170	rs10716631	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q35	PNKD	rs10716631-T	0.463748	3E-18		0.00207655	[0.0016-0.0025] unit increase	Affymetrix [13995440] (imputed)	N
2256	chr2	219138169	219138170	rs10716631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q35	PNKD	rs10716631-G	0.5411	6E-10		0.02356192	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219138169	219138170	rs10716631	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q35	PNKD	rs10716631-G	0.5415	4E-17		0.0314017	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219138939	219138940	rs4791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs4791-C	0.450672	1E-48				Affymetrix, Illumina [22063850] (imputed)	N
2256	chr2	219138939	219138940	rs4791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q35	TMBIM1	rs4791-T	0.5628	3E-18		0.03143097	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219138939	219138940	rs4791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2q35	TMBIM1	rs4791-T	0.5628	2E-16		0.02978423	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219138939	219138940	rs4791	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q35	TMBIM1	rs4791-T	0.5628	9E-16		0.0289765	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219141457	219141458	rs4674280	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q35	PNKD, TMBIM1	rs4674280-C	0.5743	5E-9		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
2256	chr2	219141457	219141458	rs4674280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2q35	TMBIM1, PNKD	rs4674280-G	0.4353	2E-13		0.02622975	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2256	chr2	219142490	219142491	rs2271543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q35		rs2271543-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2256	chr2	219146802	219146803	rs2292553	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q35	TMBIM1	rs2292553-G	0.44	1E-12		7.1	z-score increase	Affymetrix [4311822] (imputed)	N
2256	chr2	219146802	219146803	rs2292553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs2292553-?	NR	3E-45				NR [~ 8900000] (imputed)	N
2256	chr2	219146802	219146803	rs2292553	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	2q35	TMBIM1	rs2292553-?		1E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [43000000] (imputed)	N
2256	chr2	219149727	219149728	rs55827343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q35	PNKD, TMBIM1	rs55827343-A	0.561748	2E-26		0.024123387	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219149727	219149728	rs55827343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	PNKD, TMBIM1	rs55827343-A	0.561742	1E-22		0.022138568	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219149727	219149728	rs55827343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q35	PNKD, TMBIM1	rs55827343-A	0.561847	9E-27		0.024101308	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2256	chr2	219149727	219149728	rs55827343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q35	NR	rs55827343-G	0.440058	1E-48		0.027885	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2256	chr2	219151217	219151218	rs2382817	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q35	CXCR2, CXCR1, GPBAR1, AAMP, RUFY4, ARPC2, PNKD, TMBIM1	rs2382817-?		2E-7				Illumina [9725440] (imputed)	N
2256	chr2	219151217	219151218	rs2382817	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q35	NR	rs2382817-A	0.3988	2E-8	(EA)	1.0740336	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2256	chr2	219151217	219151218	rs2382817	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q35	NR	rs2382817-A	0.3988	4E-9	(EA)	1.0738211	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2256	chr2	219151217	219151218	rs2382817	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q35	ARPC2, TMBIM1, CTDSP1, SLC11A1, CXCR2, CXCR1, PNKD	rs2382817-A	0.408	4E-12		1.073	[1.042-1.104]	Affymetrix, Illumina [1230000] (imputed)	N
2257	chr2	219154780	219154781	rs992157	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	2q35	NR	rs992157-A	0.583	1E-7	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [12931465] (imputed)	N
2257	chr2	219154780	219154781	rs992157	28960316	Tanskanen T	2017-09-28	Int J Cancer	Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.	Colorectal cancer	1,701 Finnish ancestry cases, 14,082 Finnish ancestry controls	11,647 European ancestry cases, 12,356 European ancestry controls	2q35	PNKD, TMBIM1	rs992157-A	NR	2E-9		1.12	[1.08-1.16]	Illumina [9068015] (imputed)	N
2257	chr2	219155906	219155907	rs2382818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q35		rs2382818-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2257	chr2	219155906	219155907	rs2382818	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q35		rs2382818-?	NR	6E-9		0.0121303	[0.008-0.0163] unit decrease	Affymetrix [20259828] (imputed)	N
2257	chr2	219156978	219156979	rs3731860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	PNKD, TMBIM1	rs3731860-A	NR	8E-11		0.0185744	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
2257	chr2	219158502	219158502	rs56160301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q35	PNKD	rs56160301-GGTTT	0.577703	4E-23		0.022987712	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2257	chr2	219160567	219160568	rs150599792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q35		rs150599792-C	NR	8E-13		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5243	2E-10		0.02352016	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5243	9E-11		0.02400607	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5243	1E-11		0.02523736	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5243	1E-11		0.02507077	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5244	2E-12		0.02626699	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219162721	219162721	rs145013566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q35	PNKD	rs145013566-CA	0.5244	6E-11		0.02426803	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219168431	219168432	rs1877712	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q35	NR	rs1877712-G	0.4523	5E-8		0.0211	[0.013-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2257	chr2	219168431	219168432	rs1877712	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	2q35	PNKD	rs1877712-A	NR	3E-10		0.0254583	[0.018-0.033] unit increase	Affymetrix [16832071] (imputed)	N
2257	chr2	219170524	219170525	rs1017698	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q35	NA	rs1017698-A	0.5974	5E-10		0.0113	[0.0078-0.0148] unit decrease	NR [~ 27400000] (imputed)	N
2257	chr2	219172847	219172848	rs398081070	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q35		rs398081070-C	NR	3E-18		0.0177	[0.014-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2257	chr2	219175486	219175487	rs2085485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q35		rs2085485-G	NR	3E-9		0.0501	[0.033-0.067] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
2257	chr2	219177832	219177832	rs879289447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q35	PNKD	rs879289447-AT	0.555876	8E-42		0.030682564	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2257	chr2	219179655	219179656	rs34001204	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q35	PNKD	rs34001204-CA	0.4376	1E-7		0.0362	[0.023-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2257	chr2	219184274	219184275	rs2382825	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q35	PNKD	rs2382825-C	0.377051	2E-10		0.0131222	[0.0091-0.0171] unit increase	Affymetrix [NR] (imputed)	N
2257	chr2	219184435	219184436	rs13020391	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	2q35	NR	rs13020391-C	NR	2E-13		1.09	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
2257	chr2	219187697	219187698	rs1870123	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q35	PNKD	rs1870123-A	0.6249	1E-8		0.1532	[0.1-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
2257	chr2	219187900	219187901	rs1870125	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q35	PNKD	rs1870125-T	0.591	1E-16		0.03003961	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219188576	219188577	rs10194082	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q35	PNKD	rs10194082-T	0.5897	3E-27		0.0206	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
2257	chr2	219191255	219191256	rs3731861	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	2q35	PNKD, TMBIM1	rs3731861-T	0.6295	2E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
2257	chr2	219191568	219191569	rs10932774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q35		rs10932774-A	NR	1E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
2257	chr2	219192754	219192755	rs897877	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q35	PNKD, AC021016.8	rs897877-A	NR	1E-9		0.0189313	[0.013-0.025] unit decrease	Affymetrix [323123] (imputed)	N
2257	chr2	219192754	219192755	rs897877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q35	PNKD, AC021016.8	rs897877-A	0.410906	7E-13		0.016524635	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2257	chr2	219192754	219192755	rs897877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q35		rs897877-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2257	chr2	219196343	219196344	rs7567403	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	PNKD, AC021016.8	rs7567403-T	NR	5E-10		0.0175459	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
2257	chr2	219198644	219198645	rs68020776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q35	PNKD, AC021016.8	rs68020776-C	NR	3E-8		0.017412	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2257	chr2	219212036	219212037	rs145564694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q35		rs145564694-?	NR	1E-58				NR [~ 8900000] (imputed)	N
2257	chr2	219219071	219219072	rs4672888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q35	NR	rs4672888-T	NR	4E-12		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2257	chr2	219221354	219221355	rs3892153	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	AC021016.8	rs3892153-T	NR	2E-11		0.0195848	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
2257	chr2	219223665	219223666	rs67022388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	C2orf62	rs67022388-A	NR	1E-8		0.0194245	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
2257	chr2	219227755	219227756	rs6723716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	C2orf62	rs6723716-T	NR	8E-12		0.01944	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
2257	chr2	219239156	219239157	rs12617860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	C2orf62	rs12617860-G	NR	9E-9		0.0175473	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
2257	chr2	219272144	219272145	rs56191141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs56191141-G	0.372297	5E-15				Affymetrix, Illumina [20825802] (imputed)	N
2257	chr2	219272293	219272294	rs921968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q35		rs921968-T	NR	5E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
2257	chr2	219272293	219272294	rs921968	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q35		rs921968-T	NR	6E-10		0.0129	[0.0088-0.017] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2257	chr2	219272293	219272294	rs921968	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q35	MIR26B, CTDSP1	rs921968-G	0.58677	3E-27		0.0246813	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2257	chr2	219272293	219272294	rs921968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs921968-T	0.601567	2E-31				Affymetrix, Illumina [21126107] (imputed)	N
2257	chr2	219272293	219272294	rs921968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q35	NR	rs921968-T	0.586971	3E-31		0.02369	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2257	chr2	219272293	219272294	rs921968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q35		rs921968-?	NR	8E-13				NR [~ 8900000] (imputed)	N
2257	chr2	219272293	219272294	rs921968	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2q35	CTDSP1, MIR26B	rs921968-T	0.5868	4E-12		0.02431823	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	2q35		rs62182125-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q35	CTDSP1	rs62182125-A	0.551426	2E-21		0.021673612	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q35	NR	rs62182125-G	0.449221	2E-25		0.00851087	[0.0069-0.0102] unit increase	Affymetrix [16582909] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q35	NR	rs62182125-G	0.448587	1E-12		0.00756129	[0.0053-0.0098] unit increase	Affymetrix [16582621] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q35	NR	rs62182125-G	0.449221	1E-12		0.0064903	[0.0047-0.0083] unit increase	Affymetrix [16582965] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q35	NR	rs62182125-G	0.448587	6E-8		0.00611568	[0.0037-0.0085] unit increase	Affymetrix [16582614] (imputed)	N
2257	chr2	219274141	219274142	rs62182125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q35		rs62182125-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2257	chr2	219278629	219278630	rs4672892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q35		rs4672892-G	NR	1E-8		0.0139	[0.0092-0.0186] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
2257	chr2	219278629	219278630	rs4672892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q35		rs4672892-G	NR	1E-8		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2257	chr2	219279096	219279097	rs7607369	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q35	NR	rs7607369-G	0.568345	3E-53		0.028674	[0.025-0.032] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2257	chr2	219279096	219279097	rs7607369	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	2q35	VIL1	rs7607369-G	0.5673	1E-20		0.03334282	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2257	chr2	219279096	219279097	rs7607369	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	2q35	intergenic	rs7607369-A	0.42	7E-6	(Meta)	1.15	[1.08-1.24]	Illumina [254145]	N
2257	chr2	219279229	219279230	rs62182126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	VIL1	rs62182126-A	NR	5E-8		0.0256866	[0.016-0.035] unit increase	Affymetrix [319769] (imputed)	N
2257	chr2	219279587	219279588	rs62182127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q35	VIL1	rs62182127-A	0.564149	7E-14		0.01661291	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2257	chr2	219279587	219279588	rs62182127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q35	NR	rs62182127-A	0.564514	9E-17		0.016179	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2257	chr2	219279672	219279673	rs12694435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	2q35		rs12694435-G	NR	2E-17		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2258	chr2	219284214	219284215	rs55658481	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q35	VIL1	rs55658481-G	0.660807	5E-10		0.0089689	[0.0061-0.0118] unit decrease	Affymetrix [12370749]	N
2258	chr2	219286540	219286541	rs17462630	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q35	VIL1	rs17462630-C	0.3055	5E-8		0.0021	[0.0013-0.0029] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2258	chr2	219286540	219286541	rs17462630	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q35	VIL1	rs17462630-C	0.3381	4E-8		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2258	chr2	219287275	219287276	rs10189479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q35	NR	rs10189479-A	0.43402799999999997	5E-14		0.00925296	[0.0068-0.0117] unit increase	Affymetrix [16585854] (imputed)	N
2258	chr2	219287275	219287276	rs10189479	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q35	NR	rs10189479-A	0.43402799999999997	2E-6		0.00691278	[0.0041-0.0097] unit increase	Affymetrix [16585866] (imputed)	N
2258	chr2	219288898	219288899	rs3731866	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	VIL1	rs3731866-?	NR	1E-22		0.040967844	[0.033-0.049] unit decrease	Illumina [27896057] (imputed)	N
2258	chr2	219313353	219313354	rs41461846	28283553	Srinivasan L	2017-03-10	Arch Dis Child Fetal Neonatal Ed	Genome-wide association study of sepsis in extremely premature infants.	Sepsis in extremely premature infants	155 European ancestry cases, 190 non-European ancestry cases, 184 European ancestry controls, 222 non-European ancestry controls	NA	2q35	intergenic	rs41461846-?	NR	2E-6				Illumina [7200000] (imputed)	N
2258	chr2	219329484	219329485	rs520095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q35	NR	rs520095-T	0.569724	2E-47		0.027135	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2258	chr2	219334635	219334636	rs642950	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs642950-?	NR	1E-16				Affymetrix [~ 8270000] (imputed)	N
2258	chr2	219334635	219334636	rs642950	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q35	USP37	rs642950-T	0.579	2E-7		0.036	[0.022-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2258	chr2	219336958	219336959	rs833083	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q35	NR	rs833083-A	0.569646	9E-31		0.021658	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2258	chr2	219345711	219345712	rs181284109	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q35	USP37	rs181284109-G	0.999	3E-6	(AA)	0.356	unit increase	Illumina [NR] (imputed)	N
2258	chr2	219349751	219349752	rs492400	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q35	NR	rs492400-C	NR	4E-8		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
2258	chr2	219349751	219349752	rs492400	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q35	NR	rs492400-T	0.576355840395862	7E-7		0.013458029	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2258	chr2	219349751	219349752	rs492400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q35	USP37	rs492400-C	0.426	5E-7		0.015	[0.0091-0.0209] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2258	chr2	219349751	219349752	rs492400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q35	USP37	rs492400-C	0.424	7E-9	(EA, men)	0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2258	chr2	219349751	219349752	rs492400	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q35	USP37	rs492400-C	0.423	4E-7	(EA)	0.016	[0.0097-0.0219] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2258	chr2	219357741	219357742	rs496908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q35	USP37	rs496908-T	0.568562	2E-15		0.018051198	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2258	chr2	219357741	219357742	rs496908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q35	USP37	rs496908-T	0.568557	2E-22		0.022100644	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2258	chr2	219357741	219357742	rs496908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q35	USP37	rs496908-T	0.568577	2E-31		0.026440408	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2258	chr2	219358602	219358603	rs832817	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	USP37	rs832817-C	NR	8E-14		0.0211925	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
2258	chr2	219360962	219360962	rs759566014	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	USP37	rs759566014-GCCAAGATCGCA	NR	2E-13		0.0210714	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
2258	chr2	219375710	219375711	rs6717433	28283553	Srinivasan L	2017-03-10	Arch Dis Child Fetal Neonatal Ed	Genome-wide association study of sepsis in extremely premature infants.	Sepsis in extremely premature infants	155 European ancestry cases, 190 non-European ancestry cases, 184 European ancestry controls, 222 non-European ancestry controls	NA	2q35	intergenic	rs6717433-?	NR	2E-6				Illumina [7200000] (imputed)	N
2259	chr2	219419689	219419690	rs17572799	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q35		rs17572799-G	NR	2E-12		0.0726	[0.052-0.093] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2259	chr2	219427901	219427901	rs397816850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	USP37	rs397816850-CA	0.531344	9E-23		0.022735704	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2259	chr2	219431290	219431291	rs10498060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q35	NR	rs10498060-A	NR	4E-10		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2259	chr2	219431290	219431291	rs10498060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2q35	NR	rs10498060-A	NR	2E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
2259	chr2	219431290	219431291	rs10498060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q35	NR	rs10498060-A	NR	6E-20		0.025	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2259	chr2	219453096	219453097	rs673764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q35	RQCD1	rs673764-T	0.570128	7E-37		0.028213954	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2259	chr2	219463803	219463804	rs503188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs503188-?	NR	5E-73				NR [~ 8900000] (imputed)	N
2259	chr2	219466858	219466859	rs636402	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q35	RQCD1	rs636402-T	0.395066	6E-9		0.0083291	[0.0055-0.0111] unit increase	Affymetrix [12370749]	N
2259	chr2	219467507	219467508	rs2710247	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q35	NR	rs2710247-?	NR	8E-6				Illumina [at least 7383741] (imputed)	N
2259	chr2	219472324	219472325	rs611203	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q35	PLCD4	rs611203-A	0.77	2E-10		0.037	[0.021-0.053] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2259	chr2	219473736	219473737	rs832805	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	2q35	PLCD4	rs832805-T	0.3501	4E-9		0.0046	[0.003-0.0062] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2259	chr2	219482016	219482017	rs62191565	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q35	NR	rs62191565-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
2259	chr2	219498758	219498759	rs7574429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q35		rs7574429-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2259	chr2	219513781	219513782	rs4674322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	ZNF142	rs4674322-C	NR	6E-9		0.0185815	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
2259	chr2	219514758	219514759	rs10187066	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	IHH	rs10187066-?	NR	2E-7	(Conditioned on rs12470505)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
2259	chr2	219538018	219538019	rs1344645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q35		rs1344645-T	NR	1E-26		0.0194	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2259	chr2	219538018	219538019	rs1344645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs1344645-T	0.371757	2E-45				Affymetrix, Illumina [24558453] (imputed)	N
2259	chr2	219543432	219543433	rs2710251	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs2710251-C	0.386093	2E-28				Affymetrix, Illumina [24653286] (imputed)	N
2259	chr2	219545308	219545309	rs2303565	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	2q35	STK36, TTLL4, ZNF142	rs2303565-C	0.43	6E-7	(Meta)	1.17	[1.1-1.24]	Illumina [254145]	N
2260	chr2	219555261	219555262	rs1344642	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q35	STK36	rs1344642-A		7E-16		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
2260	chr2	219555572	219555573	rs1427445	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q35	STK36	rs1427445-A	0.4254	3E-13				Affymetrix, Illumina [2331072] (imputed)	N
2260	chr2	219555572	219555573	rs1427445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q35	STK36	rs1427445-A	0.446898	2E-44		0.030913057	[0.027-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
2260	chr2	219555572	219555573	rs1427445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q35	STK36	rs1427445-A	0.446925	4E-25		0.022961548	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2260	chr2	219555572	219555573	rs1427445	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs1427445-A	0.385537	1E-51				Affymetrix, Illumina [24332387] (imputed)	N
2260	chr2	219555572	219555573	rs1427445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q35		rs1427445-?	NR	3E-37				NR [~ 8900000] (imputed)	N
2260	chr2	219557737	219557738	rs2303566	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q35	STK36, TTLL4, ZNF142	rs2303566-A		1E-15		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
2260	chr2	219557737	219557738	rs2303566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	2q35	STK36	rs2303566-A	0.4469	2E-11		0.02393051	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2260	chr2	219557737	219557738	rs2303566	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	2q35	STK36	rs2303566-A	0.4468	6E-18		0.03058619	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2260	chr2	219563601	219563602	rs12993599	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q35		rs12993599-A	0.051	5E-19		0.2787186	[0.22-0.34] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
2260	chr2	219565859	219565859	rs35602378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q35		rs35602378-CT	NR	2E-17		0.0199	[0.015-0.024] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
2260	chr2	219584921	219584922	rs16859232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs16859232-?	NR	4E-16				NR [~ 8900000] (imputed)	N
2260	chr2	219587290	219587291	rs1541777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q35	NA	rs1541777-A	0.5441	2E-13		0.0119	[0.0088-0.015] unit decrease	NR [~ 27400000] (imputed)	N
2260	chr2	219587290	219587291	rs1541777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	2q35	NA	rs1541777-A	0.5441	2E-13		0.0119	[0.0088-0.015] unit decrease	NR [~ 27400000] (imputed)	N
2260	chr2	219587290	219587291	rs1541777	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q35	TTLL4	rs1541777-A	0.84	2E-8		0.036	[0.018-0.054] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2260	chr2	219590347	219590348	rs148358468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q35	TTLL4	rs148358468-A	NR	2E-10		0.0413339	[0.029-0.054] unit increase	Affymetrix [319769] (imputed)	N
2260	chr2	219590347	219590348	rs148358468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q35	TTLL4	rs148358468-A	NR	9E-11		0.0419282	[0.029-0.055] unit increase	Affymetrix [319769] (imputed)	N
2260	chr2	219590347	219590348	rs148358468	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q35	NR	rs148358468-A	0.0483	2E-6		0.0222	[0.013-0.031] unit increase	NR [~ 27400000] (imputed)	N
2260	chr2	219590418	219590419	rs4674326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q35		rs4674326-C	NR	2E-19		0.0159	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2260	chr2	219627003	219627004	rs691140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q35	TTLL4	rs691140-G	NR	3E-9		0.0171461	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
2260	chr2	219628326	219628327	rs76874831	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q35	NR	rs76874831-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
2260	chr2	219632608	219632609	rs200970170	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q35		rs200970170-T	NR	3E-32		0.0223	[0.019-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2260	chr2	219645552	219645553	rs6710529	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q35	NR	rs6710529-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
2260	chr2	219651348	219651349	rs1996992	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q35	CYP27A1	rs1996992-T	0.052	7E-18		0.2964	[0.23-0.36] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2260	chr2	219654259	219654260	rs1816213	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	2q35	chr2mb219	rs1816213-T	0.052114145	2E-7		0.3218	[0.2-0.44] unit decrease	Affymetrix [~ 9800000] (imputed)	N
2260	chr2	219668210	219668211	rs13020432	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q35	CYP27A1	rs13020432-C		1E-13		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2260	chr2	219669001	219669002	rs6436090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q35	NR	rs6436090-G	NR	1E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2260	chr2	219669001	219669002	rs6436090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q35	NR	rs6436090-G	NR	2E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2260	chr2	219669001	219669002	rs6436090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2q35	NR	rs6436090-G	NR	3E-10		0.0151	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
2260	chr2	219669001	219669002	rs6436090	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q35	NR	rs6436090-G	NR	8E-14		0.0178	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
2260	chr2	219675066	219675067	rs6709815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2q35	CYP27A1	rs6709815-T	0.5247	1E-12		0.02640964	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2260	chr2	219675066	219675067	rs6709815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q35	CYP27A1	rs6709815-T	0.5246	1E-11		0.02527397	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-14		0.078139	[0.058-0.098] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	9E-10		0.0631647	[0.043-0.083] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-13		0.0752533	[0.055-0.095] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-14		0.0765911	[0.057-0.096] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-12		0.0711175	[0.051-0.091] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-11		0.0697379	[0.049-0.09] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	6E-11		0.0668876	[0.047-0.087] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-13		0.0758916	[0.056-0.096] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-15		0.0810046	[0.061-0.101] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-10		0.0656672	[0.046-0.086] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-9		0.0604978	[0.04-0.081] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-10		0.0647852	[0.044-0.085] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	7E-9		0.0602954	[0.04-0.081] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-8		0.0572602	[0.037-0.077] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-9		0.06123	[0.041-0.081] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-9		0.0620945	[0.042-0.082] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-9		0.0620467	[0.042-0.082] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-10		0.0641502	[0.044-0.084] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-8		0.0570213	[0.037-0.077] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-9		0.0564707	[0.038-0.075] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-10		0.0663857	[0.046-0.087] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	3E-14		0.0751716	[0.056-0.095] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	1E-9		0.0623769	[0.042-0.082] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	7E-12		0.0701519	[0.05-0.09] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	7E-11		0.0667368	[0.047-0.087] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	1E-12		0.0729115	[0.053-0.093] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	2q35		rs78058190-G	0.949889	2E-9		0.0619842	[0.042-0.082] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-11		0.0692785	[0.049-0.09] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-12		0.0711967	[0.051-0.091] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	7E-12		0.0694794	[0.05-0.089] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	6E-9		0.0599929	[0.04-0.08] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-9		0.0621258	[0.042-0.082] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-9		0.0604692	[0.04-0.081] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-8		0.0523391	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	7E-12		0.0702936	[0.05-0.09] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-10		0.0606726	[0.042-0.079] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-13		0.0746792	[0.055-0.095] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-12		0.0733244	[0.053-0.093] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-11		0.0675984	[0.048-0.088] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-15		0.0805543	[0.061-0.1] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-10		0.0597124	[0.041-0.078] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	9E-18		0.0870386	[0.067-0.107] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	8E-9		0.0596522	[0.039-0.08] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-8		0.0577527	[0.038-0.078] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-9		0.0567464	[0.038-0.075] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-11		0.0682112	[0.048-0.088] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	3E-10		0.0645974	[0.045-0.085] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	8E-9		0.0594214	[0.039-0.08] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-10		0.0584919	[0.04-0.077] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-11		0.0691589	[0.049-0.089] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-16		0.0829678	[0.063-0.103] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q35		rs78058190-G	0.949829	3E-10		0.0645678	[0.045-0.085] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-14		0.0755645	[0.056-0.095] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-10		0.0654243	[0.045-0.086] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-11		0.0684899	[0.049-0.088] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-12		0.0741789	[0.054-0.095] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	5E-10		0.0594673	[0.041-0.078] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	7E-12		0.0646724	[0.046-0.083] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	8E-11		0.0669986	[0.047-0.087] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	6E-11		0.0628916	[0.044-0.082] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	5E-16		0.0816924	[0.062-0.101] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q35		rs78058190-G	0.949829	2E-9		0.0617259	[0.042-0.082] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-8		0.0585871	[0.038-0.079] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	1E-13		0.074325	[0.055-0.094] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-12		0.0713701	[0.051-0.091] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-10		0.0660169	[0.046-0.086] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-12		0.0695814	[0.05-0.089] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	5E-14		0.0780601	[0.058-0.098] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-9		0.0575354	[0.039-0.076] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-11		0.063044	[0.045-0.081] unit increase	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	4E-11		0.0679971	[0.048-0.088] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2q35		rs78058190-G	0.949892	2E-12		0.0704775	[0.051-0.09] unit decrease	NR [11722792] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35	PRKAG3	rs78058190-A	0.050464	2E-18		0.04983309	[0.039-0.061] unit increase	Affymetrix [93095623] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q35	PRKAG3	rs78058190-A	0.05047	5E-19		0.050523434	[0.039-0.062] unit increase	Affymetrix [93095623] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs78058190-A	0.0506563	9E-20				Affymetrix, Illumina [23472807] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q35	NR	rs78058190-A	0.051732	1E-22		0.047272	[0.038-0.057] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q35	PRKAG3	rs78058190-G	0.949549	3E-57		0.0815632	[0.072-0.092] unit decrease	Affymetrix [NR] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q35	PRKAG3	rs78058190-G	0.949585	2E-57		0.0784127	[0.069-0.088] unit increase	Affymetrix [NR] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q35	PRKAG3	rs78058190-G	0.949559	3E-39		0.0662511	[0.056-0.076] unit increase	Affymetrix [NR] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q35	WNT10A	rs78058190-?	NR	2E-33		0.0805	[0.069-0.092] unit increase	Affymetrix [5701386] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q35	NR	rs78058190-G	0.949606	2E-24		0.0213108	[0.017-0.026] unit increase	Affymetrix [16582909] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q35	NR	rs78058190-G	0.949422	7E-18		0.0258057	[0.02-0.032] unit increase	Affymetrix [16585854] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q35	NR	rs78058190-G	0.949606	6E-17		0.0194062	[0.015-0.024] unit increase	Affymetrix [16582965] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q35	NR	rs78058190-G	0.949422	3E-11		0.0231185	[0.016-0.03] unit increase	Affymetrix [16585866] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q35	NR	rs78058190-A	0.050582000000000016	2E-10		0.0408659	[0.028-0.054] unit increase	Affymetrix [16585745] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q35		rs78058190-?	NR	6E-13				NR [~ 8900000] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q35		rs78058190-?	NR	3E-15				NR [~ 8900000] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q35		rs78058190-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q35		rs78058190-?	NR	3E-13		0.0382172	[0.028-0.049] unit decrease	Affymetrix [20259828] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q35	NR	rs78058190-G	NR	7E-16		0.073	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q35	NR	rs78058190-G	0.948	2E-14	(EA)	0.072	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q35	NR	rs78058190-G	NR	2E-13		0.061	unit increase	Affymetrix [at least 7091467] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q35	NR	rs78058190-G	0.948	2E-12	(EA)	0.06	unit increase	Affymetrix [at least 7091467] (imputed)	N
2261	chr2	219699998	219699999	rs78058190	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	2q35	PRKAG3	rs78058190-A	0.05	6E-12		0.141	[0.1-0.18] unit decrease	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2261	chr2	219720952	219720955	rs200513066	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q35	PRKAG3, WNT6	rs200513066-?		4E-8		0.0765	[0.049-0.104] unit decrease	Illumina [31500000] (imputed)	N
2261	chr2	219720952	219720955	rs200513066	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q35	PRKAG3, WNT6	rs200513066-?		1E-14		0.1117	[0.083-0.14] unit increase	Illumina [31500000] (imputed)	N
2261	chr2	219720952	219720955	rs200513066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	WNT6	rs200513066-T	0.055613	5E-10		0.03559777	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
2261	chr2	219720952	219720955	rs200513066	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q35	intergenic	rs200513066-?	0.0508	1E-20		0.0883	[0.07-0.107] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2261	chr2	219720952	219720955	rs200513066	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q35	intergenic	rs200513066-?	0.0509	5E-21		0.0892	[0.071-0.108] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2261	chr2	219726497	219726498	rs10193725	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q35	NR	rs10193725-C	NR	2E-7		0.04	NR unit increase	NR [NR] (imputed)	N
2261	chr2	219729075	219729076	rs7558440	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs7558440-?	NR	4E-14				NR [~ 8900000] (imputed)	N
2261	chr2	219729258	219729259	rs544577047	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	WNT6	rs544577047-?	NR	4E-9		0.27137244	[0.18-0.36] unit decrease	Illumina [27896057] (imputed)	N
2261	chr2	219742452	219742453	rs116135467	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q35	Intergenic	rs116135467-G	0.993	7E-7	(AA)	0.242	NR unit increase	Illumina [NR] (imputed)	N
2261	chr2	219746291	219746292	rs74333950	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	2q35	NR	rs74333950-T	0.8603	3E-23		1.2	[1.16-1.24]	Affymetrix, Illumina [7072771] (imputed)	N
2261	chr2	219746291	219746292	rs74333950	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2q35		rs74333950-T	0.14	6E-15		0.24	[0.18-0.3] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
2261	chr2	219746291	219746292	rs74333950	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q35	NR	rs74333950-G	NR	1E-15		0.07	NR unit increase	NR [NR] (imputed)	N
2261	chr2	219746291	219746292	rs74333950	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2q35	WNT10A	rs74333950-?	NR	2E-16		1.3089005	[1.23-1.40]	Illumina [13436641] (imputed)	N
2261	chr2	219754821	219754822	rs77583146	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs77583146-G	0.987183	7E-11		0.263356	[0.18-0.34] increase	Affymetrix [11014269] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q35		rs121908120-T	0.972918	1E-34		0.344492	[0.29-0.4] increase	Affymetrix [11014269] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q35	WNT10A	rs121908120-T	0.973142	3E-11		1.0946126	NR	Affymetrix [~ 9600000] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q35	ZNF142, STK36, WNT10A, CDK5R2, FEV	rs121908120-?		2E-17				Affymetrix, Illumina [NR] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	2q35	WNT10A	rs121908120-A	0.03	2E-22		0.081	[0.065-0.097] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	2q35	WNT10A	rs121908120-A	0.03	2E-20		0.16	[0.13-0.19] unit decrease	Affymetrix [at least 8900000] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	2q35	WNT10A	rs121908120-?	NR	5E-11		0.391	[0.51-0.27] unit decrease	Illumina [NR]	N
2261	chr2	219755010	219755011	rs121908120	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	2q35	WNT10A	rs121908120-T	0.97	2E-12		1.94	[1.61-2.33]	Illumina [up to 7441713] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	2q35	WNT10A	rs121908120-A	0.03	5E-13		11.48	[8.38-14.58] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2261	chr2	219755010	219755011	rs121908120	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis	1,944 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	151 European ancestry cases,  6,019 European ancestry controls, 150 European and other ancestry cases, 2,696 European and other ancestry controls	2q35	WNT10A	rs121908120-A	0.026	2E-40		3.25	[2.74-3.85]	Illumina [NR] (imputed)	N
2261	chr2	219756382	219756383	rs7349332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q35		rs7349332-?	NR	1E-55				NR [~ 8900000] (imputed)	N
2261	chr2	219756382	219756383	rs7349332	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q35	NR	rs7349332-T	0.146121	2E-37		0.0618452	[0.052-0.071] unit increase	NR [19129689] (imputed)	N
2261	chr2	219756382	219756383	rs7349332	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2q35	WNT10A	rs7349332-C	NR	1E-19		0.178911	[0.14-0.22] unit increase	Affymetrix [27512692] (imputed)	N
2261	chr2	219756382	219756383	rs7349332	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q35	BCS1L, CDK5R2, CYP27A1, FEV, PLCD4, PRKAG3, RNF25, RQCD1, STK36, TTLL4, USP37, VIL1, WNT6, WNT10A, ZNF142	rs7349332-T	NR	2E-16		0.0712122	NR unit increase	NR [NR] (imputed)	N
2261	chr2	219756382	219756383	rs7349332	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	2q35	WNT10A	rs7349332-T	0.14	3E-14	(hair curl)	0.19	[NR] unit increase	Illumina [535076]	N
2261	chr2	219756382	219756383	rs7349332	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	2q35	WNT10A	rs7349332-T	NR	1E-6				Illumina [~ 1000000] (imputed)	N
2261	chr2	219759228	219759229	rs72966077	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	2q35	WNT10A	rs72966077-C	0.94	4E-7		1.33	[1.19-1.48]	Illumina [up to 7441713] (imputed)	N
2261	chr2	219766630	219766631	rs150011851	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	2q35	WNT10A	rs150011851-T	0.83051346	8E-26		0.094	[0.076-0.112] unit decrease	Illumina [up to 9350000] (imputed)	N
2261	chr2	219769344	219769345	rs192913879	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q35	NR	rs192913879-A	NR	2E-8		0.228375	NR unit increase	NR [NR] (imputed)	N
2261	chr2	219779910	219779911	rs77157375	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q35	NR	rs77157375-A	0.0351391	7E-10		0.0571909	[0.039-0.075] unit increase	NR [19129689] (imputed)	N
2261	chr2	219779910	219779911	rs77157375	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q35	LINC01494	rs77157375-G	0.9648	7E-9		0.208	[0.13-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
2261	chr2	219784255	219784256	rs188488867	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q35	LINC01494	rs188488867-C	0.9649	8E-9		0.2069	[0.13-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
2261	chr2	219802087	219802088	rs144065589	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	2q35	CDK5R2	rs144065589-T	0.99	2E-6		13.26	[7.85-18.67] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
2262	chr2	219829205	219829206	rs359980	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q35	CDK5R2	rs359980-G	0.054	7E-6	(TBF-b1 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2262	chr2	219840890	219840891	rs359965	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	2q35	FEV, LOC151300	rs359965-?		2E-6	(EA)			Illumina [NR]	N
2262	chr2	219854316	219854317	rs146199923	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q35	CRYBA2	rs146199923-?	NR	2E-10		1.279	[0.84-1.71] unit decrease	Affymetrix [11100000] (imputed)	N
2262	chr2	219857797	219857798	rs138594727	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	2q35	CRYBA2	rs138594727-?	0.000473	3E-7		25.92	[16-35.84] unit increase	Illumina [105487]	N
2262	chr2	219859170	219859171	rs113414093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q35		rs113414093-G	0.952724	2E-11		0.0688396	[0.049-0.089] unit decrease	NR [11722792] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q35		rs113414093-G	0.952729	3E-10		0.0646721	[0.045-0.085] unit decrease	NR [11722792] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	2q35		rs113414093-G	0.952729	6E-11		0.0690898	[0.048-0.09] unit decrease	NR [11722792] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q35		rs113414093-G	0.952725	4E-9		0.0624236	[0.042-0.083] unit decrease	NR [11722792] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q35	CRYBA2	rs113414093-A	0.04717	2E-16		0.048179712	[0.037-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q35	NR	rs113414093-G	0.9459	2E-8		0.0724	[0.047-0.097] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2262	chr2	219859170	219859171	rs113414093	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	2q35	CRYBA2	rs113414093-A	0.051	7E-9		1.12	[1.08-1.17]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2262	chr2	219863588	219863589	rs398926	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	2q35	NR	rs398926-?	NR	2E-6				Illumina [5946283] (imputed)	N
2262	chr2	219863655	219863656	rs371825	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	CRYBA2, MIR375	rs371825-?	NR	6E-12		0.02055261	[0.015-0.026] unit decrease	Illumina [27896057] (imputed)	N
2262	chr2	219894892	219894893	rs201104642	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	CCDC108	rs201104642-?	NR	4E-14		0.079927675	[0.059-0.101] unit decrease	Illumina [27896057] (imputed)	N
2262	chr2	219900067	219900068	rs17852959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q35	CCDC108	rs17852959-T	NR	2E-9		0.031075	[0.021-0.041] unit decrease	Affymetrix [321114] (imputed)	N
2262	chr2	219900067	219900068	rs17852959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q35		rs17852959-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2262	chr2	219905246	219905247	rs3736403	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs3736403-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
2262	chr2	219908368	219908369	rs12470505	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q35	CCDC108/IHH	rs12470505-T	0.9	9E-12		0.041	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
2262	chr2	219919903	219919904	rs76709099	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	IHH	rs76709099-?	NR	2E-14		0.045027155	[0.033-0.057] unit decrease	Illumina [27896057] (imputed)	N
2262	chr2	219919942	219919943	rs200216644	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	IHH	rs200216644-?	NR	2E-10		0.16958171	[0.12-0.22] unit decrease	Illumina [27896057] (imputed)	N
2262	chr2	219920036	219920037	rs394452	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	2q35	NR	rs394452-A	0.188	4E-6		0.2394	[0.14-0.34] unit increase	Illumina [up to 730525]	N
2262	chr2	219920564	219920565	rs3731878	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial length	4,419 European ancestry individuals	NA	2q35	NR	rs3731878-T	0.09447	2E-6		1.402	[0.8-2] unit increase	Illumina [at least 567677] (imputed)	N
2262	chr2	219921199	219921200	rs3100776	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	2q35	IHH	rs3100776-C	0.444	4E-7	(East Asian)	0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
2262	chr2	219922834	219922835	rs6730783	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	2q35		rs6730783-A	NR	3E-12	(East Asian)			Affymetrix [NR] (imputed)	N
2262	chr2	219924960	219924961	rs142036701	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	2q35		rs142036701-?	NR	9E-10		0.234148	[0.15-0.32] unit decrease	NR [9800000] (imputed)	N
2262	chr2	219929393	219929394	rs138809270	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs138809270-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
2262	chr2	219929393	219929394	rs138809270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs138809270-?	NR	8E-74				NR [~ 8900000] (imputed)	N
2262	chr2	219934347	219934348	rs1052483	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2q35	IHH, CRYBA2, FEV, SLC23A3, TUBA1	rs1052483-C	0.91	1E-6		6.9	[4.16-9.64] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
2263	chr2	219943845	219943846	rs6724465	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	2q35	IHH	rs6724465-A	0.1	2E-8		0.06	[0.02-0.10] s.d. decrease (males)	Affymetrix [402951]	N
2263	chr2	219947001	219947002	rs17608726	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q35		rs17608726-A	NR	8E-59		0.0299	[0.026-0.033] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2263	chr2	219949183	219949184	rs16859517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q35	NHEJ1, SLC23A3	rs16859517-T	NR	1E-8		0.0423061	[0.028-0.057] unit increase	Affymetrix [321016] (imputed)	N
2263	chr2	219949183	219949184	rs16859517	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q35	NR	rs16859517-?	NR	3E-6		0.04160404	[0.024-0.059] unit increase	Illumina [34656550] (imputed)	N
2263	chr2	219949183	219949184	rs16859517	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q35	NHEJ1	rs16859517-T	0.039	5E-17		0.067	[0.051-0.083] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2263	chr2	219949183	219949184	rs16859517	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2q35	IHH	rs16859517-T	0.39	5E-6		0.05	[0.03-0.07] cm increase	Illumina [420885]	N
2263	chr2	219953588	219953589	rs76426653	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q35	NHEJ1, SLC23A3	rs76426653-T	NR	5E-8		0.0449487	[0.029-0.061] unit increase	Affymetrix [321114] (imputed)	N
2263	chr2	219983029	219983030	rs7588654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q35		rs7588654-T	0.612207	5E-41		0.0277761	[0.024-0.032] unit decrease	Illumina [13479295] (imputed)	N
2263	chr2	219983029	219983030	rs7588654	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	NHEJ1	rs7588654-?	NR	2E-45		0.041534923	[0.036-0.047] unit decrease	Illumina [27896057] (imputed)	N
2263	chr2	219983029	219983030	rs7588654	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q35	NHEJ1	rs7588654-T	0.53	1E-23		0.051	[0.039-0.063] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
2263	chr2	220004943	220004944	rs145296160	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q35	NHEJ1, SLC23A3	rs145296160-C	NR	2E-10		0.0798888	[0.055-0.104] unit decrease	Affymetrix [321114] (imputed)	N
2263	chr2	220004943	220004944	rs145296160	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q35	NHEJ1	rs145296160-T	0.9829	4E-15		0.0595	[0.045-0.074] unit increase	Affymetrix [18391927] (imputed)	N
2263	chr2	220006582	220006583	rs1402508	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x sex interaction in metabolic syndrome	239 Mediterranean women, 187 Mediterranean men	NA	2q35	NHEJ1	rs1402508-?	NR	9E-6	(docosahexaenoic fatty acid)			Illumina [621723]	N
2263	chr2	220019637	220019638	rs12694450	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q35	NR	rs12694450-T	0.324646	3E-10		0.00722401	[0.0047-0.0097] unit increase	Affymetrix [16582621] (imputed)	N
2263	chr2	220019637	220019638	rs12694450	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q35	NR	rs12694450-T	0.324646	4E-8		0.00706409	[0.0044-0.0097] unit increase	Affymetrix [16582614] (imputed)	N
2263	chr2	220025307	220025308	rs3731890	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2q35	NHEJ1	rs3731890-T	0.626986375616297	7E-9		0.0283	[0.019-0.038] SD increase	Illumina [22400000] (imputed)	N
2263	chr2	220025380	220025381	rs191291494	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs191291494-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
2263	chr2	220028899	220028900	rs6753739	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q35	SLC23A3	rs6753739-A	0.54	1E-11		0.031	[0.019-0.043] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2263	chr2	220029493	220029494	rs149471676	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q35	SLC23A3, RP11-33O4.2	rs149471676-T	0.0197	1E-6		0.131	[0.078-0.184] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2263	chr2	220031254	220031255	rs13028225	33203707	Zheng JS	2020-11-17	Diabetes Care	Plasma Vitamin C and Type 2 Diabetes: Genome-Wide Association Study and Mendelian Randomization Analysis in European Populations.	Vitamin C levels	52,018 European ancestry individuals	NA	2q35	SLC23A3	rs13028225-T	0.857	2E-30		0.102	[0.084-0.12] unit increase	Affymetrix, Illumina [up to 7933258] (imputed)	N
2263	chr2	220035117	220035118	rs13029742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q35	SLC23A3	rs13029742-A	0.305389	2E-9		0.0144532	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2263	chr2	220035117	220035118	rs13029742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs13029742-A	0.297174	3E-12				Affymetrix, Illumina [24246363] (imputed)	N
2263	chr2	220035117	220035118	rs13029742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q35	NR	rs13029742-A	0.304577	4E-13		0.014429	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2263	chr2	220035117	220035118	rs13029742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q35		rs13029742-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2263	chr2	220041927	220041928	rs6715064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q35	CNPPD1, FAM134A	rs6715064-T	NR	1E-8		0.0189692	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
2263	chr2	220041927	220041928	rs6715064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q35	CNPPD1	rs6715064-T	0.310657	5E-12		0.0167954	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2263	chr2	220041927	220041928	rs6715064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q35	CNPPD1	rs6715064-T	0.31065	4E-15		0.019157087	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2263	chr2	220041927	220041928	rs6715064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs6715064-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
2263	chr2	220041927	220041928	rs6715064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q35		rs6715064-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2263	chr2	220045034	220045035	rs7577690	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q35	FAM134A	rs7577690-A	0.320081	1E-11		0.015998796	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2263	chr2	220045034	220045035	rs7577690	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q35	NR	rs7577690-?		5E-8				NR [8377093]	N
2263	chr2	220049127	220049128	rs2385395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q35		rs2385395-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2263	chr2	220049289	220049290	rs2385394	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs2385394-T	0.563539	3E-13				Affymetrix, Illumina [23467995] (imputed)	N
2263	chr2	220050706	220050707	rs11680709	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q35		rs11680709-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2263	chr2	220050706	220050707	rs11680709	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q35	FAM134A	rs11680709-A	0.592972	9E-13		0.01609621	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2263	chr2	220051675	220051676	rs74187143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs74187143-?	NR	3E-43				NR [~ 8900000] (imputed)	N
2263	chr2	220052328	220052329	rs62191825	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q35	FAM134A	rs62191825-C	0.5884	5E-11		0.02473969	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2263	chr2	220056228	220056229	rs1996719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q35	ZFAND2B	rs1996719-A	0.326697	2E-9		0.014636538	[0.0099-0.0194] unit decrease	Affymetrix [93095623] (imputed)	N
2263	chr2	220056228	220056229	rs1996719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q35	ZFAND2B	rs1996719-A	0.326652	3E-15		0.019434595	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2263	chr2	220056228	220056229	rs1996719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q35	ZFAND2B	rs1996719-A	0.326701	1E-21		0.023708155	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2263	chr2	220058271	220058272	rs7580095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q35	ZFAND2B	rs7580095-A	0.375828	2E-11		0.015446235	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2263	chr2	220061600	220061601	rs6707588	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q35	NR	rs6707588-T	NR	9E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.014994	2E-48		0.13456193	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.014995	3E-49		0.13590874	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.015012	2E-20		0.08408158	[0.066-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.014992	3E-10		0.058093634	[0.04-0.076] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.014975	8E-43		0.125553	[0.11-0.14] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q35	ABCB6	rs57467915-A	0.014973	4E-44		0.12768152	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q35	NR	rs57467915-G	0.985559	3E-20				Affymetrix, Illumina [22063850] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q35	NR	rs57467915-G	0.984914	6E-23		0.08064	[0.065-0.097] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q35	NR	rs57467915-G	0.984986	4E-11		0.0218329	[0.015-0.029] unit increase	Affymetrix [16582909] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q35	NR	rs57467915-G	0.984986	2E-10		0.0241376	[0.017-0.032] unit increase	Affymetrix [16582965] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q35		rs57467915-?	NR	2E-17				NR [~ 8900000] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	2q35	ABCB6	rs57467915-A	0.015	2E-20		0.1371125	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr2	220081415	220081416	rs57467915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	2q35	ABCB6	rs57467915-A	0.015	1E-21		0.1412679	[0.11-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr2	220111661	220111662	rs185901280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q35	STK16	rs185901280-A	0.00767799999999996	4E-12		0.089343295	[0.064-0.115] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220111661	220111662	rs185901280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q35	STK16	rs185901280-A	0.00767799999999996	1E-10		0.08282825	[0.058-0.108] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220111661	220111662	rs185901280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q35	STK16	rs185901280-A	0.00767700000000005	2E-12		0.09056636	[0.065-0.116] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220111661	220111662	rs185901280	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q35	STK16	rs185901280-A	0.00767799999999996	2E-11		0.08584469	[0.061-0.111] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220116508	220116509	rs45488900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q35	TUBA4A	rs45488900-T	0.098076	3E-94		0.07761159	[0.07-0.085] unit increase	Affymetrix [93095623] (imputed)	N
2264	chr2	220118530	220118531	rs939574	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q35	TUBA4B, TUBA4A	rs939574-C	0.9015	1E-35		0.07523185	[0.063-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2264	chr2	220136350	220136351	rs3731892	29953918	Deng C	2018-06-25	Gene	Identification of three novel loci of ALDH2 Gene for Serum Folate levels in a Male Chinese Population by Genome-Wide Association Study.	Serum folate levels	1,999 Han Chinese ancestry individuals	NA	2q35	TUBA4B	rs3731892-?	NR	5E-6				Illumina [1940243] (imputed)	N
2264	chr2	220138585	220138586	rs7589023	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q35	NA	rs7589023-T	0.8363	2E-14		0.0174	[0.013-0.022] unit increase	NR [~ 27400000] (imputed)	N
2264	chr2	220140795	220140796	rs4308117	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2q35	TUBA4A	rs4308117-A	0.160711	9E-6		0.64	[0.526 - 0.779]	Illumina [5396854] (imputed)	N
2264	chr2	220146401	220146402	rs3731896	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q35	intergenic	rs3731896-T	0.174	5E-6		0.029	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2264	chr2	220150980	220150981	rs114786890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q35	NR	rs114786890-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2264	chr2	220155458	220155459	rs137994137	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UROS	5,366 Icelandic ancestry individuals	NA	2q35		rs137994137-A	0.01644	4E-15		0.583504	[0.44-0.73] unit increase	Illumina [7506463] (imputed)	N
2264	chr2	220155458	220155459	rs137994137	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q35	PTPRN	rs137994137-A	0.014503	1E-17		0.08164029	[0.063-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
2264	chr2	220156420	220156421	rs4410282	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs4410282-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2264	chr2	220156530	220156531	rs11886864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q35	NR	rs11886864-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2264	chr2	220161305	220161306	rs2292604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q35		rs2292604-?	NR	3E-13				NR [~ 8900000] (imputed)	N
2264	chr2	220165526	220165527	rs79047930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q35		rs79047930-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2264	chr2	220165526	220165527	rs79047930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	2q35	PTPRN, AC114803.3	rs79047930-T	0.0147	4E-18		0.1295696	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr2	220165526	220165527	rs79047930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	2q35	PTPRN, AC114803.3	rs79047930-T	0.0147	4E-19		0.1332466	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
2264	chr2	220168615	220168616	rs2271594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q35		rs2271594-T	NR	1E-8		0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2264	chr2	220175615	220175615	rs34566708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q35		rs34566708-AT	NR	2E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2264	chr2	220192652	220192653	rs34561714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs34561714-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2265	chr2	220210183	220210184	rs143602646	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q35	RESP18, DNPEP	rs143602646-?	NR	2E-9		0.06415638	[0.043-0.085] unit increase	Illumina [27896057] (imputed)	N
2265	chr2	220250231	220250232	rs115897075	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	2q35	DNPEP	rs115897075-C	0.02	4E-11	(X - 24462)	0.532	[0.38-0.69] unit increase	Illumina [7750367] (imputed)	N
2265	chr2	220297037	220297038	rs7564856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q35		rs7564856-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SPEG, DES	rs907683-G	0.441161	2E-21	(152 ms)	0.0536282	[0.042-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	9E-21	(150 ms)	0.0529853	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	9E-11	(220 ms)	0.0374881	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	8E-20	(134 ms)	0.0511283	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	7E-9	(322 ms)	0.0338472	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	7E-9	(304 ms)	0.0342173	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	7E-21	(130 ms)	0.0526842	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	7E-19	(116 ms)	0.0499963	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	7E-18	(190 ms)	0.0494824	[0.038-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-22	(138 ms)	0.0537757	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-21	(148 ms)	0.0528633	[0.042-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-20	(146 ms)	0.0513813	[0.04-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-17	(198 ms)	0.0480543	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-16	(188 ms)	0.0466952	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-16	(112 ms)	0.0455336	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-13	(80 ms)	0.0406248	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-12	(216 ms)	0.0395493	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	6E-12	(214 ms)	0.0398002	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-9	(324 ms)	0.034372	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-9	(306 ms)	0.0344433	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-8	(90 ms)	0.0317213	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-23	(156 ms)	0.0557234	[0.045-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-20	(182 ms)	0.0524297	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-20	(166 ms)	0.0523463	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-19	(164 ms)	0.0507316	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-19	(118 ms)	0.0500635	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-18	(128 ms)	0.0486772	[0.037-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-17	(124 ms)	0.0463007	[0.035-0.058] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-17	(122 ms)	0.0472972	[0.036-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	5E-10	(84 ms)	0.0350498	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-9	(88 ms)	0.0341009	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-9	(308 ms)	0.0345735	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-9	(224 ms)	0.0337181	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-20	(140 ms)	0.0509093	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-18	(142 ms)	0.0486016	[0.037-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-17	(196 ms)	0.0487489	[0.037-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-14	(96 ms)	0.0426869	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-14	(208 ms)	0.0434487	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-13	(98 ms)	0.0405774	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-13	(78 ms)	0.0409169	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-10	(86 ms)	0.0359725	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	4E-10	(222 ms)	0.0361046	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-8	(318 ms)	0.0327545	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-8	(314 ms)	0.0323827	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-8	(226 ms)	0.0320306	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-21	(184 ms)	0.0537322	[0.042-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-21	(170 ms)	0.0543631	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-20	(180 ms)	0.0525227	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-20	(160 ms)	0.0523893	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-18	(192 ms)	0.0505966	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-17	(114 ms)	0.0477126	[0.036-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-16	(126 ms)	0.0455892	[0.034-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-15	(200 ms)	0.0450485	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-14	(202 ms)	0.0434745	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-13	(94 ms)	0.0417891	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-13	(104 ms)	0.0408106	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	3E-12	(110 ms)	0.0394225	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-8	(316 ms)	0.0332079	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-23	(178 ms)	0.0562078	[0.045-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-22	(154 ms)	0.0550951	[0.044-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-22	(136 ms)	0.0537905	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-21	(168 ms)	0.0546789	[0.043-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-21	(158 ms)	0.0538121	[0.043-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-20	(174 ms)	0.0533202	[0.042-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-19	(172 ms)	0.052036	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-19	(162 ms)	0.051325	[0.04-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-18	(144 ms)	0.0502221	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-17	(194 ms)	0.0491954	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-17	(120 ms)	0.0476555	[0.036-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-14	(206 ms)	0.0442292	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-13	(210 ms)	0.0422049	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-12	(212 ms)	0.0411288	[0.03-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	2E-11	(218 ms)	0.0388056	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-9	(92 ms)	0.0349025	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-23	(176 ms)	0.0566461	[0.045-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-20	(132 ms)	0.0526073	[0.041-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-18	(186 ms)	0.0500219	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-14	(204 ms)	0.0444207	[0.033-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-14	(102 ms)	0.0426479	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-14	(100 ms)	0.0422072	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-11	(106 ms)	0.0383782	[0.027-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	DES, SPEG	rs907683-G	0.441161	1E-10	(76 ms)	0.0366019	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	2q35	SPEG	rs907683-G	0.4284	5E-7		0.333646	[0.2-0.46] unit increase	Affymetrix [~ 7800000] (imputed)	N
2265	chr2	220299540	220299541	rs907683	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q35	SPEG, DES	rs907683-T	0.43	1E-20		0.3335	[0.26-0.4] unit decrease	Affymetrix [19941912] (imputed)	N
2265	chr2	220308948	220308949	rs112068790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q35	NR	rs112068790-C	NR	1E-15		0.0564	[0.042-0.07] unit increase	Affymetrix [9000000] (imputed)	N
2265	chr2	220308948	220308949	rs112068790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q35	NR	rs112068790-C	NR	4E-15		0.0556	[0.042-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
2265	chr2	220310111	220310112	rs57016874	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q35		rs57016874-T	0.0387	2E-8		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2265	chr2	220319480	220319481	rs17574571	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q35	Intergenic	rs17574571-A	0.0371	4E-9	(MTAG)	0.0206	[0.014-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2266	chr2	220353103	220353104	rs875097	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q35	SPEG	rs875097-A	0.298797	3E-8		0.0125105	[0.0081-0.0169] unit increase	NR [16516521] (imputed)	N
2266	chr2	220353103	220353104	rs875097	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q35	NR	rs875097-?	NR	5E-6		4.581	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2266	chr2	220358197	220358198	rs1050816	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	2q35		rs1050816-C	0.6714	1E-11		0.0255762	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
2266	chr2	220358197	220358198	rs1050816	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q35	SPEG	rs1050816-T	0.333	2E-20		0.0026	[0.002-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2266	chr2	220358197	220358198	rs1050816	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q35	SPEG	rs1050816-T	0.3349	1E-19		0.0029	[0.0021-0.0037] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2266	chr2	220360682	220360683	rs4674406	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q35	NR	rs4674406-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
2266	chr2	220362556	220362557	rs12474050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q35		rs12474050-T	NR	2E-26		0.0218	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2266	chr2	220362556	220362557	rs12474050	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q35	AC053503.11	rs12474050-C	0.6569	4E-10		0.1142	[0.079-0.15] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2266	chr2	220372090	220372091	rs79373409	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q35	Intergenic	rs79373409-A	0.2074	3E-8	(MTAG)	0.0158	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2266	chr2	220379559	220379560	rs3731909	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q35	NR	rs3731909-G	NR	9E-21		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
2266	chr2	220379559	220379560	rs3731909	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q35	NR	rs3731909-G	NR	3E-21		0.0234	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2266	chr2	220382699	220382700	rs4674407	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q35	ASIC4	rs4674407-T	0.4969	3E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [19819130] (imputed)	N
2266	chr2	220382699	220382700	rs4674407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q35		rs4674407-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2266	chr2	220387838	220387839	rs116087048	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q35	ASIC4	rs116087048-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
2266	chr2	220412281	220412282	rs145979116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q35		rs145979116-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2266	chr2	220414018	220414019	rs13023533	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	2q35	TMEM198	rs13023533-T	0.55	1E-10		0.41	[0.29-0.53] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2266	chr2	220414018	220414019	rs13023533	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	2q35	TMEM198	rs13023533-T	0.5482	1E-9		0.405	[0.27-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2266	chr2	220417265	220417266	rs59332477	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q35		rs59332477-T	0.4622	2E-11		0.08923375	[0.062-0.116] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in large HDL	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	5E-9		0.159754	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	6E-9		0.158677	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in large HDL	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	4E-9		0.160235	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting large HDL particle concentration	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	5E-9		0.16012	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	1E-8		0.156195	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220422028	220422029	rs55873563	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	2q35		rs55873563-A	0.180330093	5E-9		0.159599	[0.11-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
2266	chr2	220432956	220432957	rs35009641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs35009641-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2267	chr2	220493235	220493236	rs73072582	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs73072582-T	0.01045	5E-9	(CES2)	0.5346	NR unit increase	Illumina [1671387] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	2q35		rs35394392-G	0.78	2E-10		0.045	[0.031-0.059] unit decrease	Affymetrix [NR]	N
2267	chr2	220500829	220500830	rs35394392	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	2q35		rs35394392-G	0.78	1E-12		0.05	[0.036-0.064] unit decrease	Affymetrix [NR]	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-16	(208 ms)	0.0547964	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-16	(206 ms)	0.0540318	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-16	(198 ms)	0.0537944	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-16	(170 ms)	0.0538549	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-13	(154 ms)	0.0484091	[0.035-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	9E-12	(146 ms)	0.0458566	[0.033-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	8E-9	(108 ms)	0.0380628	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	8E-17	(192 ms)	0.0561397	[0.043-0.069] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	8E-13	(156 ms)	0.0486739	[0.036-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	8E-10	(232 ms)	0.0422424	[0.029-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	8E-10	(130 ms)	0.0405313	[0.028-0.053] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	7E-15	(212 ms)	0.0530664	[0.04-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	7E-14	(160 ms)	0.0493867	[0.036-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	6E-12	(226 ms)	0.0470737	[0.034-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-16	(200 ms)	0.0538161	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-15	(214 ms)	0.0530472	[0.04-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-15	(204 ms)	0.0523009	[0.039-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-15	(202 ms)	0.0521222	[0.039-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-14	(218 ms)	0.0506961	[0.038-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-12	(228 ms)	0.0475745	[0.034-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	5E-12	(138 ms)	0.0460478	[0.033-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	4E-9	(236 ms)	0.0408423	[0.028-0.054] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	4E-8	(90 ms)	0.0355789	[0.023-0.049] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	4E-16	(190 ms)	0.0553596	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	4E-15	(164 ms)	0.0523182	[0.039-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	4E-12	(150 ms)	0.0462004	[0.033-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-17	(172 ms)	0.0560143	[0.043-0.069] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-16	(194 ms)	0.0545148	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-16	(176 ms)	0.0546158	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-15	(196 ms)	0.0528931	[0.04-0.066] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-15	(188 ms)	0.0536813	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-14	(166 ms)	0.050702	[0.038-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-12	(136 ms)	0.0467826	[0.034-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-11	(230 ms)	0.0457412	[0.033-0.059] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	3E-11	(134 ms)	0.0433658	[0.03-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-9	(234 ms)	0.0418194	[0.029-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-8	(238 ms)	0.039023	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-8	(128 ms)	0.0375542	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-8	(126 ms)	0.0374337	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-17	(182 ms)	0.0570246	[0.044-0.07] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-17	(180 ms)	0.0566634	[0.044-0.07] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-16	(184 ms)	0.0552804	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-16	(178 ms)	0.0550232	[0.042-0.068] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-15	(210 ms)	0.0535663	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-14	(162 ms)	0.0512082	[0.038-0.064] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-13	(222 ms)	0.0500293	[0.037-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-13	(158 ms)	0.0487368	[0.036-0.062] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-12	(152 ms)	0.0473475	[0.034-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-12	(144 ms)	0.0471797	[0.034-0.06] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	2E-11	(148 ms)	0.0450526	[0.032-0.058] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-8	(124 ms)	0.037538	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-16	(174 ms)	0.0558884	[0.043-0.069] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-15	(186 ms)	0.0538664	[0.041-0.067] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-14	(216 ms)	0.0521905	[0.039-0.065] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-13	(220 ms)	0.0499547	[0.037-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-13	(168 ms)	0.0502004	[0.037-0.063] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-12	(224 ms)	0.0480289	[0.035-0.061] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-11	(142 ms)	0.0440751	[0.031-0.057] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-10	(140 ms)	0.0429142	[0.03-0.056] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q35	SLC4A3	rs35394392-G	0.778443	1E-10	(132 ms)	0.0421623	[0.029-0.055] unit increase	Affymetrix [10000000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	2q35		rs35394392-G	0.780453	9E-7	(female)	0.0442915	[0.027-0.062] bpm decrease	Affymetrix [9800000] (imputed)	N
2267	chr2	220500829	220500830	rs35394392	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	2q35		rs35394392-G	0.78	8E-9		0.036	[0.024-0.048] bpm decrease	Affymetrix [9800000] (imputed)	N
2268	chr2	220607776	220607784	rs112800917	28087736	Ludwig KU	2017-01-13	Hum Mol Genet	Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip ? cleft palate and cleft palate only.	Nonsyndromic cleft lip with or without cleft palate	399 European ancestry cases, 1,318 European ancestry controls, 666 European ancestry trios, 795 Asian trios	224 European ancestry cases, 921 European ancestry controls, 152 Mayan cases, 323 Mayan controls, 198 Middle Eastern cases, 391 Middle Eastern controls	2q35	NR	rs112800917-?		9E-7	(All)			NR [8012124] (imputed)	N
2268	chr2	220653995	220653996	rs6734545	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	2q35	NR	rs6734545-A	0.18	8E-7		1.2		Illumina [803202]	N
2268	chr2	220668737	220668738	rs3815854	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	2q35	NR	rs3815854-A	NR	3E-7		1.25	[1.15-1.35]	Affymetrix [842556]	N
2268	chr2	220668737	220668738	rs3815854	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	2q35	NR	rs3815854-?	NR	7E-6	(Meta-All, NSCL/P)			NR [497084]	N
2268	chr2	220698124	220698125	rs10498070	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	2q35	DNPEP	rs10498070-?		2E-7	(lcSSc)	1.16	[NR]	Illumina [NR]	N
2268	chr2	220706984	220706985	rs11677783	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q35	SLC4A3, MIR4268	rs11677783-T	0.289	2E-10	(AA)	0.051	[0.035-0.067] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
2268	chr2	220706984	220706985	rs11677783	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	2q35	SLC4A3, MIR4268	rs11677783-T	0.297	3E-8	(AA)	0.056	[0.036-0.076] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
2268	chr2	220712075	220712076	rs7576578	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	2q35	AC008281.1	rs7576578-T	0.0072	7E-6		0.3901	[0.22-0.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2268	chr2	220719935	220719936	rs56043864	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q35	NR	rs56043864-A	0.107	6E-6	(IFNalpha_ABC_of_CD20p)			Illumina [5084123] (imputed)	N
2269	chr2	220846087	220846088	rs6748837	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q35		rs6748837-T	0.22	1E-8		5.7	z score increase	Affymetrix [9061022] (imputed)	N
2269	chr2	220846087	220846088	rs6748837	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q35	NR	rs6748837-T	0.2124	9E-10				NR [9056863] (imputed)	N
2270	chr2	220864653	220864654	rs10198756	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q35	NR	rs10198756-C	0.139068532490975	3E-6	(IGP77)	0.2053	[0.12-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
2270	chr2	220898717	220898718	rs77175201	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q35	NR	rs77175201-?		3E-6				Illumina [4322238] (imputed)	N
2270	chr2	220912177	220912178	rs187402274	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q35	Intergenic	rs187402274-C	NR	1E-7	(between families)	5.264	unit increase	Affymetrix [up to 15107142] (imputed)	N
2270	chr2	220914217	220914218	rs2911645	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q35	NR	rs2911645-?	NR	4E-12		15744.726	NR unit decrease	Illumina [2379855]	N
2271	chr2	221024538	221024539	rs6748896	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	2q35	NR	rs6748896-?	NR	5E-6		1.0261	[0.63-1.42] unit decrease	Affymetrix [7154205] (imputed)	N
2271	chr2	221044784	221044785	rs10932837	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q35	NR	rs10932837-?		1E-9		0.0131055	[0.0089-0.0173] unit decrease	Affymetrix [19400418] (imputed)	N
2271	chr2	221055872	221055873	rs10208088	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	2q35	NR	rs10208088-?		4E-9		0.0131026	[0.0087-0.0175] unit increase	Affymetrix [19400418] (imputed)	N
2272	chr2	221218884	221218885	rs6746678	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q35		rs6746678-G	0.34	7E-20		9.13	z score increase	Affymetrix [9061022] (imputed)	N
2272	chr2	221218884	221218885	rs6746678	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q35		rs6746678-G	0.34	1E-11		6.76	z score increase	Affymetrix [9061022] (imputed)	N
2272	chr2	221218884	221218885	rs6746678	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q35	NR	rs6746678-G	0.3843	4E-13				NR [9056863] (imputed)	N
2274	chr2	221423093	221423094	rs13414440	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q35	NR	rs13414440-?	NR	5E-12				Affymetrix [NR]	N
2274	chr2	221449309	221449310	rs1712240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q35		rs1712240-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2274	chr2	221467560	221467561	rs59806594	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q35	NR	rs59806594-A	0.0122	3E-13	(RPL9)	0.1599	NR unit increase	Illumina [1671387] (imputed)	N
2275	chr2	221579237	221579238	rs1996407	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs1996407-?	NR	3E-8				NR [NR]	N
2275	chr2	221593953	221593954	rs56242723	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs56242723-?	NR	2E-8				NR [NR]	N
2275	chr2	221634813	221634814	rs67052051	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs67052051-?	NR	1E-8				NR [NR]	N
2275	chr2	221639977	221639978	rs6726751	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs6726751-?	NR	2E-8				NR [NR]	N
2275	chr2	221639977	221639978	rs6726751	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs6726751-?	NR	5E-8				NR [NR]	N
2275	chr2	221639977	221639978	rs6726751	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.1		rs6726751-?	NR	2E-8				NR [NR]	N
2275	chr2	221639977	221639978	rs6726751	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q36.1	NR	rs6726751-A	0.695	3E-6		0.017418338	[0.01-0.025] unit increase	Affymetrix [up to 6544775] (imputed)	N
2276	chr2	221713311	221713312	rs728637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs728637-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2276	chr2	221720087	221720088	rs10932886	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	2q36.1	EPHA4	rs10932886-?	NR	1E-7	(multiple phenotypes)			Illumina [530992]	N
2277	chr2	221799496	221799497	rs7424369	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2q36.1	Intergenic	rs7424369-?	NR	5E-6		2.638	[NR]	Affymetrix [492217] (imputed)	N
2277	chr2	221802157	221802158	rs11895372	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.1	NR	rs11895372-?	NR	9E-6				Affymetrix [NR]	N
2277	chr2	221814084	221814085	rs1542354	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.1		rs1542354-A	0.4764	3E-9		0.0084	[0.0057-0.0111] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2277	chr2	221814084	221814085	rs1542354	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.1	Intergenic	rs1542354-A	0.4764	7E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2277	chr2	221835287	221835288	rs1971218	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.1		rs1971218-A	0.5249	5E-9	(conditional-joint)	0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2277	chr2	221882583	221882584	rs11678670	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs11678670-C	0.08711	1E-8	(LTF)	0.1226	NR unit increase	Illumina [1671387] (imputed)	N
2277	chr2	221882654	221882655	rs11679784	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs11679784-C	0.04878	1E-8	(LTF)	0.1586	NR unit increase	Illumina [1671387] (imputed)	N
2277	chr2	221899443	221899444	rs10498091	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	2q36.1	intergenic	rs10498091-?	NR	6E-6	(LVM)			Affymetrix [70897]	N
2278	chr2	221921894	221921895	rs113952126	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q36.1		rs113952126-?	NR	4E-6		1.125486	[1.07018233272721-1.18364753556884]	Illumina [up to 7827597] (imputed)	N
2278	chr2	221992440	221992441	rs75125690	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Parabacteroides johnsonii abundance in stool	5,959 Finnish ancestry individuals	NA	2q36.1		rs75125690-C	0.0183563	9E-9		0.265541	[0.18-0.36] unit increase	Illumina [7980478] (imputed)	N
2278	chr2	222035911	222035912	rs1864803	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (docosahexaenoic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2q36.1	NR	rs1864803-C	0.6048	6E-6		0.0931	[0.053-0.133] unit decrease	Illumina [up to 1980188] (imputed)	N
2279	chr2	222038916	222038917	rs17413224	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	2q36.1	Intergenic	rs17413224-?	NR	3E-6		1.7674088	[NR]	Affymetrix [492217] (imputed)	N
2279	chr2	222041065	222041066	rs7603664	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	2q36.1	EPHA4	rs7603664-T	0.424	2E-22		1.129	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222046340	222046341	rs188832927	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	2q36.1	NYAP2	rs188832927-?	0.073287	7E-6		2.131358	[1.533736-2.961844]	Affymetrix, Illumina [NR] (imputed)	N
2279	chr2	222051418	222051419	rs10169459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs10169459-?	NR	1E-186				NR [~ 8900000] (imputed)	N
2279	chr2	222051418	222051419	rs10169459	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	EPHA4	rs10169459-T	0.4203	2E-86		1.163	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222051418	222051419	rs10169459	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	2q36.1	EPHA4	rs10169459-T	0.413	1E-100		0.058	[0.052-0.064] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
2279	chr2	222067446	222067447	rs1432262	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	EPHA4	rs1432262-?	NR	1E-24		1.1263798	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222067739	222067740	rs12478119	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q36.1	AC011233.2	rs12478119-C	0.199	6E-14	(Promotilin, MLN.5631.83.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
2279	chr2	222069956	222069957	rs16862260	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MLN	5,368 Icelandic ancestry individuals	NA	2q36.1		rs16862260-A	0.2401	3E-31		0.251732	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
2279	chr2	222072177	222072178	rs17348202	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		2q36.1	EPHA4	rs17348202-G	0.05	1E-6		4.85	[2.57-9.13]	Illumina [518577]	N
2279	chr2	222073535	222073536	rs115669657	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	2q36.1		rs115669657-G	NR	1E-7		5.5404	[3.56-7.52] unit increase	Illumina [NR] (imputed)	N
2279	chr2	222089796	222089797	rs17349283	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	2q36.1	EPHA4	rs17349283-G	0.4534	2E-14		1.1	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222089796	222089797	rs17349283	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	EPHA4	rs17349283-G	0.4534	1E-64		1.141	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222137314	222137315	rs145106904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs145106904-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2279	chr2	222141043	222141044	rs16862425	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	EPHA4	rs16862425-?	NR	3E-13		1.1396011	NR	Affymetrix [9154080] (imputed)	N
2279	chr2	222152913	222152914	rs13393019	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs13393019-A	0.04878	3E-8	(IARS2)	0.05609	NR unit decrease	Illumina [1671387] (imputed)	N
2280	chr2	222178866	222178867	rs1430246	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	2q36.1	EPHA4, SLC4A3	rs1430246-?		2E-7	(IFN gamma response)			Illumina [NR]	N
2280	chr2	222207612	222207613	rs12622686	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q36.1	LOC100129746, EPHA4	rs12622686-?	0.5867	5E-6		2.4390244	[1.64-3.57]	Illumina [1556551]	N
2280	chr2	222211011	222211012	rs1025370	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	2q36.1	Intergenic	rs6737417-A	0.5384	3E-6		4.672	z score increase	Illumina [at least 6190549] (imputed)	N
2280	chr2	222213042	222213043	rs6737417	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment adjusted for intelligence quotient (pleiotropy)	1,826 children	NA	2q36.1	Intergenic	rs6737417-A	0.5384	9E-6		4.452	z score increase	Illumina [at least 6190549] (imputed)	N
2280	chr2	222218650	222218651	rs1367239	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	2q36.1	Intergenic	rs1367239-C	0.699361429	7E-6		0.148777	[0.084-0.214] unit increase	Illumina [6969139] (imputed)	N
2280	chr2	222276985	222276986	rs148015825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs148015825-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2280	chr2	222277158	222277159	rs10432451	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	2q36.1	EPHA4	rs10432451-T	0.33	5E-6	(African American)	0.19	0.11-0.27 unit decrease	Illumina [NR] (imputed)	N
2281	chr2	222302404	222302405	rs56099808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q36.1		rs56099808-G	NR	3E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2281	chr2	222305159	222305160	rs3770194	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	2q36.1	NR	rs3770194-T	0.9215	5E-6		0.0154	[0.0087-0.0221] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
2281	chr2	222312657	222312658	rs36072132	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q36.1	EPHA4	rs36072132-?		2E-8				NR [7428630] (imputed)	N
2281	chr2	222314414	222314415	rs3770180	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.1	NR	rs3770180-G	0.3262	1E-8				NR [9056863] (imputed)	N
2281	chr2	222317544	222317545	rs3770176	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q36.1	NR	rs3770176-T	0.2523	2E-8				NR [9056863] (imputed)	N
2281	chr2	222320065	222320066	rs3815970	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.1		rs3815970-A	0.47	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
2281	chr2	222320065	222320066	rs3815970	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q36.1	EPHA4	rs3815970-G	0.507157	6E-14		0.0138016	[0.01-0.017] unit decrease	NR [13737936] (imputed)	N
2281	chr2	222320065	222320066	rs3815970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q36.1		rs3815970-?	NR	4E-13				NR [~ 8900000] (imputed)	N
2281	chr2	222320065	222320066	rs3815970	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q36.1		rs3815970-?	NR	2E-15		0.016097	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
2281	chr2	222325138	222325139	rs919503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q36.1		rs919503-C	NR	8E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2281	chr2	222337914	222337915	rs3770154	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q36.1	EPHA4	rs3770154-T	NR	3E-6		0.14082178	[0.079-0.202] unit decrease	Illumina [> 6200000] (imputed)	N
2281	chr2	222357960	222357961	rs10189230	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	2q36.1	EPHA4	rs10189230-T	0.58	4E-6	(men)	0.092	[0.053-0.131] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
2281	chr2	222376986	222376987	rs141745548	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	2q36.1	NR	rs141745548-?	NR	2E-6		1.1453	[0.7-1.59] unit decrease	Illumina [at least 560000] (imputed)	N
2281	chr2	222382365	222382366	rs2565745	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 80)	19,670 European ancestry individuals	NA	2q36.1		rs2565745-?	NR	2E-8				NR [9705931] (imputed)	N
2281	chr2	222384479	222384480	rs2710511	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Entorhinal cortical volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q36.1	EPHA4	rs2710511-?		5E-6				Illumina [4322238] (imputed)	N
2281	chr2	222388613	222388614	rs11900971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs11900971-?	NR	1E-27				NR [~ 8900000] (imputed)	N
2281	chr2	222425619	222425620	rs10498120	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs10498120-G	NR	2E-8		0.9484		Affymetrix [9869154] (imputed)	N
2282	chr2	222475265	222475266	rs73091544	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs73091544-A	0.01394	5E-9	(EPHX1)	4.872	NR unit increase	Illumina [1671387] (imputed)	N
2282	chr2	222523886	222523887	rs34440628	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (maternal genotype effect)	1,142 Bangladeshi ancestry (non-array genotyped, whole-genome imputed) mothers	NA	2q36.1	intergenic	rs34440628-A	0.09	1E-10	(eicosenoic acid)	0.64	[-1.4768-2.7568] unit increase	Illumina [~ 932000] (imputed)	N
2282	chr2	222523886	222523887	rs34440628	29514873	Mychaleckyj JC	2018-03-07	J Med Genet	Multiplex genomewide association analysis of breast milk fatty acid composition extends the phenotypic association and potential selection of FADS1 variants to arachidonic acid, a critical infant micronutrient.	Breast milk fatty acid composition (infant genotype effect)	1,142 Bangladeshi ancestry infants	NA	2q36.1	intergenic	rs34440628-A	0.09	9E-7	(eicosenoic acid)			Illumina [~ 932000]	N
2282	chr2	222533935	222533936	rs13420950	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to hydroxyurea	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	2q36.1		rs13420950-?	NR	8E-7				Illumina [1510701]	N
2282	chr2	222549196	222549197	rs10209697	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	2q36.1	intergenic	rs10209697-A	0.07	2E-6		2.66	[1.77-3.99]	NR [~ 38000000] (imputed)	N
2284	chr2	222760278	222760279	rs13398147	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	2q36.1	NR	rs13398147-T	0.199	3E-8		1.38	[1.23-1.54]	Affymetrix [435183]	N
2284	chr2	222760278	222760279	rs13398147	26394188	Zhu Z	2015-09-22	Nat Commun	Genome-wide association study identifies new susceptibility loci for adolescent idiopathic scoliosis in Chinese girls.	Adolescent idiopathic scoliosis	960 Han Chinese ancestry cases, 1,499 Han Chinese ancestry controls	3,316 Han Chinese ancestry cases,  4,516 Han Chinese ancestry controls	2q36.1	PAX3, EPHA4	rs13398147-T	0.201	8E-13		1.28	[1.20-1.37]	Affymetrix [516220]	N
2284	chr2	222801698	222801699	rs824931	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	2q36.1	NR	rs824931-G	0.35	3E-6	(females + males)	0.07	[NR] kg increase	Illumina [318237]	N
2285	chr2	222847965	222847966	rs79186150	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q36.1	intergenic	rs79186150-A	0.098866451375935	3E-6	(G_Phascolarctobacterium_RNT)	0.239955	[0.14-0.34] unit decrease	Illumina [7711310] (imputed)	N
2285	chr2	222870105	222870106	rs6436285	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q36.1	PAX3, HSPA9P	rs6436285-G	0.026	5E-6		3.9	[2.08-7.31]	Illumina [1556551]	N
2285	chr2	222881517	222881518	rs1559473	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q36.1	PAX3	rs1559473-?		1E-6				Illumina [859311]	N
2285	chr2	222921915	222921916	rs13391419	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q36.1	PAX3, HSPA9P	rs13391419-A	0.026	5E-6		3.9	[2.08-7.31]	Illumina [1556551]	N
2285	chr2	222922523	222922524	rs1007119	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	2q36.1	LOC646644	rs1007119-?	NR	1E-6		2.907	[1.79-4.03] unit decrease	Illumina [498648]	N
2285	chr2	222922523	222922524	rs1007119	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	2q36.1	LOC646644	rs1007119-?	NR	9E-8		1.981	[1.3-2.66] unit decrease	Illumina [498648]	N
2285	chr2	222928442	222928443	rs11902276	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs11902276-C	0.03484	2E-8	(IARS2)	0.06153	NR unit decrease	Illumina [1671387] (imputed)	N
2286	chr2	222996268	222996269	rs118156955	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	2q36.1		rs118156955-T	NR	7E-7		4.25	[2.4-7.52]	Affymetrix [NR] (imputed)	N
2286	chr2	223006380	223006381	rs368352056	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q36.1	NR	rs368352056-?	NR	7E-6		1.23133	[0.7-1.77] unit increase	NR [13958389] (imputed)	N
2286	chr2	223009786	223009787	rs62185728	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q36.1	NR	rs62185728-?	NR	2E-10	(Brain stem)			NR [9227495] (imputed)	N
2286	chr2	223025054	223025055	rs116254882	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q36.1	PAX3	rs116254882-G	0.957095	5E-19		1.099863	NR	Affymetrix [~ 9600000] (imputed)	N
2286	chr2	223025054	223025055	rs116254882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs116254882-?	NR	1E-34				NR [~ 8900000] (imputed)	N
2286	chr2	223026934	223026935	rs34460569	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs34460569-T	0.23	3E-9	(right exocanthion-nasion distance)	0.098	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223026934	223026935	rs34460569	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs34460569-T	0.23	1E-8	(nasion-left exocanthion distance)	0.095	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223026934	223026935	rs34460569	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	2q36.1	EPHA4, PAX3	rs34460569-?	NR	3E-7		0.025	[0.035-0.016] unit decrease	Illumina [12039491] (imputed)	N
2286	chr2	223028581	223028582	rs34032897	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs34032897-G	0.23	2E-17	(right endocanthion-nasion distance)	0.141	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223030501	223030502	rs1370926	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q36.1		rs1370926-G	0.223814655	7E-62				Illumina [7417619] (imputed)	N
2286	chr2	223033395	223033396	rs11895863	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs11895863-G	0.23	2E-14	(nasion-left endocanthion distance)	0.128	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223034081	223034082	rs2218065	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Monobrow thickness	2,922 Latin American individuals	NA	2q36.1	PAX3	rs2218065-?	NR	5E-8				Illumina [9143600] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion position 2)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	1E-7				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion depth 2)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	6E-9				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion depth 1)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	4E-10				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella size)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	1E-11				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 3)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	3E-7				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	2q36.1		rs10176525-?	NR	5E-9				Illumina [8703729] (imputed)	N
2286	chr2	223039051	223039052	rs10176525	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	2q36.1	PAX3	rs10176525-?	NR	4E-14	(facial module 10)			Illumina [9478608] (imputed)	N
2286	chr2	223049020	223049021	rs6730714	25208829	Anderson D	2014-09-11	Genes Immun	Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.	Vitamin D levels	645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals	NA	2q36.1	PAX3	rs6730714-A	0.04	1E-6	(Age 6)	1.18	[1.10-1.26] unit increase	Illumina [2461244] (imputed)	N
2286	chr2	223057208	223057209	rs75779789	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	2q36.1		rs75779789-A	NR	7E-10		0.0338	[0.023-0.045] unit increase	Affymetrix [6193476] (imputed)	N
2286	chr2	223059658	223059659	rs79732694	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs79732694-T	0.15	4E-10	(subnasale-right alare distance)	0.123	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223059658	223059659	rs79732694	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs79732694-T	0.15	1E-13	(left alare-subnasale distance)	0.146	NR unit increase	Illumina [7029494] (imputed)	N
2286	chr2	223066918	223066919	rs2855268	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.1		rs2855268-G	0.17	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
2286	chr2	223068285	223068286	rs7559271	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	2q36.1	PAX3	rs7559271-G	NR	4E-11	(Nasion position)	0.082	NR increase	Illumina [9117642] (imputed)	N
2286	chr2	223068285	223068286	rs7559271	22341974	Paternoster L	2012-02-16	Am J Hum Genet	Genome-wide association study of three-dimensional facial morphology identifies a variant in PAX3 associated with nasion position.	Facial morphology	2,185 European ancestry adolescent individuals	1,622 European ancestry adolescent individuals	2q36.1	PAX3	rs7559271-G	NR	4E-16	(n-men 3D dist)	0.388	[0.30-0.48] mm increase	Illumina [2543887] (imputed)	N
2286	chr2	223069624	223069625	rs13017777	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	PAX3	rs13017777-T	0.4985	3E-12		1.056	NR	Affymetrix [9154080] (imputed)	N
2286	chr2	223070675	223070676	rs77177529	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q36.1		rs77177529-?	NR	5E-83				NR [~ 8900000] (imputed)	N
2286	chr2	223070675	223070676	rs77177529	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q36.1	NR	rs77177529-T	0.103786	6E-18		0.0439682	[0.034-0.054] unit decrease	NR [19129689] (imputed)	N
2286	chr2	223070675	223070676	rs77177529	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q36.1	PAX3	rs77177529-T	NR	2E-9		0.0609437	NR unit decrease	NR [NR] (imputed)	N
2286	chr2	223072018	223072019	rs2855266	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.1	NR	rs2855266-A	0.1408	1E-8				NR [9056863] (imputed)	N
2286	chr2	223072018	223072019	rs2855266	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	2q36.1	NR	rs2855266-?	NR	6E-13	(Quadrant II (Nose), Segment 46)	0.059652295	NR unit increase	NR [7417619] (imputed)	N
2286	chr2	223074398	223074399	rs59277927	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q36.1	NR	rs59277927-A	0.20185	6E-11		0.0251696	[0.018-0.033] unit increase	NR [19129689] (imputed)	N
2287	chr2	223085954	223085955	rs2234675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q36.1	NR	rs2234675-?	NR	2E-11	(left cerebellum exterior)			NR [9227495] (imputed)	N
2287	chr2	223085954	223085955	rs2234675	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	2q36.1	NR	rs2234675-?	NR	1E-9	(right cerebellum exterior)			NR [9227495] (imputed)	N
2287	chr2	223087328	223087329	rs7590866	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q36.1	PAX3	rs7590866-G	0.855325	2E-18		0.94725275	NR	Affymetrix [~ 9600000] (imputed)	N
2287	chr2	223094488	223094489	rs2053316	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	2q36.1	PAX3	rs2053316-?	NR	8E-104		0.149	[0.135-0.162] unit increase	Illumina [12039491] (imputed)	N
2287	chr2	223100522	223100523	rs2118666	25869804	Ibrahim-Verbaas CA	2015-04-14	Mol Psychiatry	GWAS for executive function and processing speed suggests involvement of the CADM2 gene.	Information processing speed	Up to 30,807 European ancestry individuals, up to 1,267 Erasmus Rucphen (founder/genetic isolated) individuals, up to 535 Korculan (founder/genetic isolated) individuals, up to 417 Orcadian (founder/genetic isolated) individuals, up to 311 Vis (founder/genetic isolated) individuals	Up to 8,436 European ancestry individuals, up to 1,444 African American individuals	2q36.1	PAX3	rs2118666-T	0.46	7E-7	(LDST/DSST - age and sex adjusted)	4.95	[NR] unit decrease	Affymetrix, Illumina [up to 2357391] (imputed)	N
2287	chr2	223110511	223110512	rs12618431	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	PAX3	rs12618431-?	NR	1E-10		1.0818998	NR	Affymetrix [9154080] (imputed)	N
2287	chr2	223120553	223120554	rs113418730	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q36.1	PAX3	rs113418730-G	0.874582	4E-14		1.0511258	NR	Affymetrix [~ 9600000] (imputed)	N
2287	chr2	223133507	223133508	rs12618491	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q36.1	PAX3	rs12618491-?	NR	6E-13		1.0633773	NR	Affymetrix [9154080] (imputed)	N
2287	chr2	223136939	223136940	rs16863633	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.1	NR	rs16863633-?	NR	3E-37				Affymetrix [NR]	N
2287	chr2	223142040	223142041	rs141030989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q36.1		rs141030989-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2287	chr2	223159118	223159119	rs2303948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.1		rs2303948-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2288	chr2	223218769	223218770	rs150237096	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	2q36.1	NR	rs150237096-?	NR	5E-6		0.3501	[0.2-0.5] unit increase	Illumina [at least 560000] (imputed)	N
2288	chr2	223317187	223317188	rs34384037	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	2q36.1		rs34384037-T	NR	7E-6		5.3239	[3.05-7.6] unit increase	Illumina [NR] (imputed)	N
2288	chr2	223322735	223322736	rs146446086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Depression	13,559 European ancestry cases, 435,855 European ancestry controls, 836 East Asian ancestry cases, 177,794 East Asian ancestry controls	NA	2q36.1		rs146446086-A	NR	1E-8		0.3571	[0.23-0.48] unit increase	Affymetrix, Illumina [25842841] (imputed)	N
2288	chr2	223333941	223333942	rs1865896	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	2q36.1	SGPP2	rs1865896-G	0.5052	3E-6		1.1227713		Illumina [8265319] (imputed)	N
2289	chr2	223353445	223353446	rs17496827	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Anorexia nervosa	237 European ancestry female cases, 2,287 European ancestry female controls	NA	2q36.1	SGPP2	rs17496827-C	0.55	7E-6		0.042	[0.024-0.06] unit decrease	Illumina [6150213] (imputed)	N
2289	chr2	223389336	223389337	rs1966690	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	2q36.1	PAX3	rs1966690-A	0.48	2E-8	(left alare-subnasale distance)	0.078	NR unit increase	Illumina [7029494] (imputed)	N
2289	chr2	223430984	223430985	rs4674669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q36.1	NR	rs4674669-C	0.138638	9E-9		0.00654446	[0.0042-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
2289	chr2	223430984	223430985	rs4674669	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q36.1	NR	rs4674669-C	0.138638	2E-8		0.00684645	[0.0042-0.0095] unit increase	Affymetrix [16582965] (imputed)	N
2290	chr2	223484599	223484600	rs76119111	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q36.1	NR	rs76119111-G	NR	6E-7	(GEE model)	1.4893	[0.9-2.08] unit increase	NR [NR] (imputed)	N
2290	chr2	223507293	223507294	rs150779234	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.1	NR	rs150779234-C		3E-6		0.2171	[0.13-0.31] SD units decrease	NR [10700000] (imputed)	N
2290	chr2	223517704	223517705	rs10170846	25781172	Avramopoulos D	2015-03-17	PLoS One	Infection and inflammation in schizophrenia and bipolar disorder: a genome wide study for interactions with genetic variation.	Schizophrenia (inflammation and infection response interaction)	460 Ashkenazi Jewish schizophrenia cases, 241  Ashkenazi Jewish controls	NA	2q36.1	MOGAT1, FARSB, SGPP2	rs10170846-?		2E-6	(anti-HSV1)			Affymetrix [516638]	N
2290	chr2	223529111	223529112	rs4674676	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	2q36.1	FARSB, MOGAT1	rs4674676-?	NR	2E-17		1.1890606	[1.14-1.24]	Illumina [13537761] (imputed)	N
2290	chr2	223529213	223529214	rs6706067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q36.1		rs6706067-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2290	chr2	223543632	223543633	rs7579011	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	2q36.1		rs7579011-A	0.164631487	7E-14				Illumina [7417619] (imputed)	N
2290	chr2	223550984	223550985	rs6710583	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	2q36.1		rs6710583-T	0.19	8E-6		1.38	[1.2-1.59]	Illumina [10258281] (imputed)	N
2290	chr2	223600804	223600805	rs1374538	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q36.1	FARSB	rs1374538-?	NR	7E-6	(alanine)	0.3168161	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
2291	chr2	223726323	223726324	rs12468021	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.1		rs12468021-?	NR	7E-12				NR [~ 8900000] (imputed)	N
2292	chr2	223789308	223789309	rs34626661	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	2q36.1	ACSL3	rs34626661-?	0.0	2E-8				Affymetrix [547296]	N
2292	chr2	223823131	223823132	rs2028383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.1		rs2028383-C	0.462814	1E-12		0.01591718	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2292	chr2	223845941	223845942	rs7584993	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Sour taste perception in obesity with metabolic syndrome	378 individuals	NA	2q36.1	intergenic	rs7584993-C	0.398	5E-6		0.464	[0.27-0.66] unit increase	Illumina [622468]	N
2292	chr2	223852352	223852353	rs1440063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q36.1		rs1440063-A	0.582694	5E-18		0.019781178	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2293	chr2	223901655	223901656	rs1837494	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	2q36.1	intergenic	rs1837494-G	0.631347603998295	3E-6		1.1912		Illumina [7574753] (imputed)	N
2293	chr2	223905107	223905108	rs1961637	27749845	Lesseur C	2016-10-17	Nat Genet	Genome-wide association analyses identify new susceptibility loci for oral cavity and pharyngeal cancer.	Oropharynx cancer	2,506 European ancestry cases, 135 cases, 5,984 European ancestry controls, 601 controls	NA	2q36.1	intergenic	rs1961637-T	0.601490382710969	3E-7		1.2057		Illumina [7574753] (imputed)	N
2293	chr2	223916809	223916810	rs539961071	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q36.1	KCNE4	rs539961071-T	0.0018	2E-6		0.7004	[0.41-0.99] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2293	chr2	223917811	223917812	rs10201907	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus U abundance in stool	5,959 Finnish ancestry individuals	NA	2q36.1		rs10201907-T	0.0279179	9E-9		0.111219	[0.073-0.149] unit increase	Illumina [7980478] (imputed)	N
2293	chr2	223917982	223917983	rs12621643	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	2q36.1	KCNE4	rs12621643-T	0.28	3E-6		1.48	[1.20-1.70]	Affymetrix [307944]	N
2293	chr2	223924724	223924725	rs183162530	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.1	NR	rs183162530-G		4E-6		0.191	[0.11-0.27] SD units decrease	NR [10700000] (imputed)	N
2293	chr2	223936737	223936738	rs1440072	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	2q36.1	KCNE4	rs1440072-C	0.06	8E-7		3.66	[2.21-5.11] cm increase	Affymetrix [2073674] (imputed)	N
2293	chr2	223936737	223936738	rs1440072	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Body mass index	1,780 Filipino ancestry females	NA	2q36.1	KCNE4	rs1440072-C	0.06	4E-6		0.06	[0.04-0.08] unit increase	Affymetrix [2073674] (imputed)	N
2293	chr2	223937558	223937559	rs960246	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	2q36.1	intergenic	rs960246-T	0.013	1E-9	(CRP)	0.219	[NR] mg/dl increase	Affymetrix [1701735] (imputed)	N
2293	chr2	223948554	223948555	rs34454929	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	2q36.1	KCNE4, TRNAK39P	rs34454929-C	0.05	1E-7		0.67	[0.42-0.92] unit increase	Illumina [7797256] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.1	KCNE4	rs6711710-T	0.2188	8E-40		0.03	[0.025-0.035] unit decrease	Affymetrix [18391927] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q36.1	KCNE4	rs6711710-C	0.782598	5E-11		0.017840797	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q36.1	NR	rs6711710-C	0.780414	3E-10		0.0528466	[0.037-0.069] unit increase	Affymetrix [17914406] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.1		rs6711710-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.1	NR	rs6711710-?	NR	3E-10		0.16819	[0.12-0.22] unit increase	Affymetrix [7794483] (imputed)	N
2293	chr2	223956409	223956410	rs6711710	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.1	NR	rs6711710-?	NR	2E-7	(female)	0.1523	[0.095-0.21] unit increase	Affymetrix [7794483] (imputed)	N
2293	chr2	223964842	223964843	rs1448290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q36.1	NR	rs1448290-C	0.939838	4E-34		0.051023	[0.043-0.059] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2293	chr2	223966968	223966969	rs11891864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q36.1	KCNE4	rs11891864-G	0.9428705	8E-15		0.037223455	[0.028-0.047] unit increase	Affymetrix [93095623] (imputed)	N
2293	chr2	223972126	223972127	rs4674740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.1	NR	rs4674740-A	0.0591891	1E-33				Affymetrix, Illumina [17210439] (imputed)	N
2293	chr2	223972126	223972127	rs4674740	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q36.1	KCNE4	rs4674740-G	0.9419	9E-14		0.05798045	[0.043-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
2293	chr2	223974442	223974443	rs978917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q36.1		rs978917-A	NR	6E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2293	chr2	223974442	223974443	rs978917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q36.1	KCNE4	rs978917-A	0.615906	1E-16		0.018788965	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2293	chr2	223974739	223974745	rs35423927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.1	KCNE4	rs35423927-T	0.9435354	3E-42		0.06608601	[0.057-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
2293	chr2	223982433	223982434	rs1448318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q36.1		rs1448318-A	NR	2E-10		0.0085	[0.006-0.011] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2293	chr2	223982433	223982434	rs1448318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q36.1	KCNE4	rs1448318-A	0.615647	3E-12		0.015952166	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2293	chr2	223982433	223982434	rs1448318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q36.1	KCNE4	rs1448318-A	0.615636	5E-14		0.017155552	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2293	chr2	223982433	223982434	rs1448318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.1	NR	rs1448318-A	0.608878	5E-17				Affymetrix, Illumina [23472807] (imputed)	N
2293	chr2	223982433	223982434	rs1448318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q36.1	NR	rs1448318-A	0.614888	5E-20		0.017849	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2293	chr2	223984484	223984485	rs977057	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q36.1	KCNE4	rs977057-T	0.9432927	1E-21		0.046462797	[0.037-0.056] unit increase	Affymetrix [93095623] (imputed)	N
2294	chr2	224023295	224023296	rs895767	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	2q36.1	NR	rs895767-?	NR	9E-8		0.2765	[0.18-0.38] unit increase	Illumina [at least 560000] (imputed)	N
2294	chr2	224023295	224023296	rs895767	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	2q36.1	intergenic	rs895767-?	NR	7E-6	(EA)	0.0102	[0.00572-0.01457] unit decrease	Illumina [1530316]	N
2294	chr2	224027432	224027433	rs4674746	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q36.1		rs4674746-?	NR	2E-6		1.0412995	[1.02396101855221-1.05893161290349]	Illumina [up to 7827597] (imputed)	N
2294	chr2	224036536	224036537	rs10166552	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q36.1	KCNE4, SCG2	rs10166552-?		2E-9	(African)			Affymetrix, Illumina [18800000] (imputed)	N
2294	chr2	224036536	224036537	rs10166552	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q36.1	KCNE4, SCG2	rs10166552-T	0.0162	4E-6	(African)	10.83	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
2294	chr2	224036536	224036537	rs10166552	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	2q36.1	KCNE4, SCG2	rs10166552-?	NR	1E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
2294	chr2	224050054	224050055	rs7419571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q36.1		rs7419571-C	NR	7E-9		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2294	chr2	224062444	224062445	rs79351035	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q36.1	NR	rs79351035-?	NR	7E-6	(AA)	0.8247	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2294	chr2	224078029	224078031	rs10589414	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	2q36.1	NR	rs10589414-?		9E-6		2.56	[1.69-3.88]	Illumina [539473] (imputed)	N
2294	chr2	224096285	224096286	rs10197080	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Motor composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	2q36.1	NR	rs10197080-?	NR	6E-6		1.88	[1.07-2.7] unit decrease	Illumina [552487]	N
2295	chr2	224157865	224157866	rs181176493	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	2q36.1	TRK-TTT15-1, KCNE4	rs181176493-A	0.01	2E-7		3.88	[2.33-6.47]	Illumina [8744746] (imputed)	N
2295	chr2	224167878	224167879	rs2056190	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	2q36.1	TRNAK39P	rs2056190-C	0.1272	3E-6		1.65	[1.338-2.036]	Affymetrix, Illumina [14074516] (imputed)	N
2295	chr2	224191677	224191678	rs79992897	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	2q36.1	NR	rs79992897-G		3E-7		0.9461	[0.59-1.31] SD units decrease	NR [10700000] (imputed)	N
2295	chr2	224209115	224209116	rs6743806	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	2q36.1	SCG2	rs6743806-C	0.7326	5E-6	(EA)			Illumina [NR] (imputed)	N
2295	chr2	224225186	224225187	rs16864685	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Fasting plasma glucose	2,732 Kuwaiti ancestry individuals	NA	2q36.1	KCNE4, SCG2	rs16864685-?	NR	7E-7		4.956	NR unit decrease	Illumina [up to 1520000] (imputed)	N
2296	chr2	224274621	224274622	rs16864755	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Recurrent major depressive disorder x sex interaction	5,314 European ancestry cases, 10,149 European ancestry controls	NA	2q36.1	KCNE4, SCG2	rs16864755-A	0.0935	6E-6		0.3187	[0.18-0.46] unit decrease	NR [NR] (imputed)	N
2296	chr2	224274621	224274622	rs16864755	20200953	Karasik D	2010-01-29	J Bone Miner Res	Genome-wide pleiotropy of osteoporosis-related phenotypes: the Framingham Study.	Osteoporosis-related phenotypes	2,073 related female individuals	NA	2q36.1	SCG2	rs16864755-?		4E-6	(Femoral Neck BMD)	0.24	[0.14-0.34] cm3 increase	Affymetrix [433510]	N
2296	chr2	224303301	224303302	rs111962436	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA			rs111962436-A	0.0261	5E-6		4.571	z score decrease	Illumina [7275796] (imputed)	N
2296	chr2	224306858	224306859	rs12990266	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.1	NR	rs12990266-G		3E-12		0.2363	[0.17-0.3] SD units decrease	NR [10700000] (imputed)	N
2296	chr2	224360829	224360830	rs55864163	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs55864163-?	NR	9E-29	(conditioned on rs6722871)			Illumina [6022229] (imputed)	N
2296	chr2	224360829	224360830	rs55864163	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs55864163-?	NR	1E-7	(PDGF-BB, conditioned on rs6722871)			Illumina [6022229] (imputed)	N
2297	chr2	224424907	224424908	rs16864938	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.1	NR	rs16864938-?	NR	9E-6				Affymetrix [NR]	N
2297	chr2	224430205	224430206	rs78084104	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.1	NR	rs78084104-G		3E-6		0.1653	[0.096-0.235] SD units decrease	NR [10700000] (imputed)	N
2297	chr2	224436495	224436496	rs146424372	34670813	Horimoto A	2021-10-20	J Am Soc Nephrol	Genome-Wide Admixture Mapping of Estimated Glomerular Filtration Rate and Chronic Kidney Disease Identify European and African Ancestry-of-Origin Loci in Hispanic and Latino Individuals in the United States.	Chronic kidney disease	12,601 Hispanic/Latino individuals	NA	2q36.1		rs146424372-?	NR	4E-8				Illumina [NR] (imputed)	N
2297	chr2	224459682	224459683	rs16864968	22095909	Lange CM	2011-11-16	Hepatology	Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to pegylated interferon-alpha and ribavirin therapy.	Response to hepatitis C treatment	707 European ancestry cases	NA	2q36.1	SCG2	rs16864968-G	NR	3E-6		0.826	[0.48-1.17] ug/L decrease	NR [NR]	N
2297	chr2	224512859	224512860	rs7557395	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Sodium levels	127,304 Japanese ancestry individuals	NA	2q36.1	SCG2, AP1S3	rs7557395-?	NR	4E-13		0.0362	[0.026-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
2298	chr2	224561328	224561329	rs734556	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	2q36.1	SCG2, AP1S3	rs734556-?	NR	9E-6		0.032	[NR] unit increase	Illumina [522636]	N
2298	chr2	224561328	224561329	rs734556	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	2q36.1	SCG2, AP1S3	rs734556-?	NR	5E-8	(FEV1/FVC < 80%)	0.043	[NR] unit increase	Illumina [522636]	N
2298	chr2	224561328	224561329	rs734556	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	2q36.1	SCG2, AP1S3	rs734556-?	NR	2E-6	(Males only)	0.036	[NR] unit increase	Illumina [522636]	N
2298	chr2	224565920	224565921	rs76701622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.1	NR	rs76701622-T	0.01045	3E-9	(MT1H)	0.06651	NR unit increase	Illumina [1671387] (imputed)	N
2298	chr2	224599694	224599695	rs112834343	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	2q36.1	AP1S3	rs112834343-?	NR	7E-7				Affymetrix, Illumina [15642250] (imputed)	N
2299	chr2	224663807	224663808	rs6755198	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q36.1	NR	rs6755198-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2299	chr2	224664049	224664050	rs6755248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q36.1	NR	rs6755248-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2299	chr2	224664049	224664050	rs6755248	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q36.1	AP1S3	rs6755248-?	NR	3E-13		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
2299	chr2	224664049	224664050	rs6755248	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q36.1	AP1S3	rs6755248-G	NR	1E-6		1.034	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
2299	chr2	224667691	224667692	rs13383994	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q36.1	AP1S3	rs13383994-A	0.41	2E-10				NR [> 9500000] (imputed)	N
2299	chr2	224667931	224667932	rs112215592	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs112215592-?	NR	2E-12	(conditioned on rs6722871 and rs55864163)			Illumina [6022229] (imputed)	N
2299	chr2	224667931	224667932	rs112215592	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs112215592-?	NR	2E-6	(PDGF-BB, conditioned on rs6722871 and rs55864163)			Illumina [6022229] (imputed)	N
2299	chr2	224727070	224727071	rs116000059	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q36.1	NR	rs116000059-C	0.960876	6E-11		0.033292	[0.023-0.043] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2299	chr2	224727070	224727071	rs116000059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q36.1		rs116000059-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2300	chr2	224866575	224866576	rs12436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.1		rs12436-?	NR	2E-16				NR [~ 8900000] (imputed)	N
2300	chr2	224869642	224869643	rs2118409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q36.1		rs2118409-C	0.596825	3E-14		0.0155215	[0.012-0.02] unit decrease	Illumina [13479295] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNS2	5,360 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	1E-157		0.597263	[0.55-0.64] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXPH1	5,357 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	2E-19		0.212093	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1L	5,352 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	4E-14		0.171503	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GPR101	5,358 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	2E-31		0.266986	[0.22-0.31] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL13	5,363 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	2E-31		0.272239	[0.23-0.32] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AQP4	5,367 Icelandic ancestry individuals	NA	2q36.1		rs13412535-A	0.1963	1E-16		0.193074	[0.15-0.24] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs13412535-?	NR	1E-324		1.34		Illumina [11329225] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.1	NR	rs13412535-G	0.773408	9E-34				Affymetrix, Illumina [17210439] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q36.1	SERPINE2	rs13412535-A	0.239	5E-13	(Platelet-derived growth factor subunit B, PDGFB.4149.8.2)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	2q36.1	NR	rs13412535-G		6E-7		0.1067	[0.065-0.148] SD units increase	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs13412535-G		2E-55		0.3352	[0.29-0.38] SD units decrease	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	2q36.1	NR	rs13412535-G	NR	7E-8		0.1164	[0.074-0.159] SD units increase	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	2q36.1	NR	rs13412535-G		1E-7		0.1764	[0.11-0.24] SD units decrease	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	2q36.1	NR	rs13412535-G		9E-6		0.095	[0.053-0.137] SD units increase	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	2q36.1	NR	rs13412535-G		7E-7		0.1112	[0.067-0.155] SD units increase	NR [10700000] (imputed)	N
2300	chr2	224874873	224874874	rs13412535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q36.1	SERPINE2	rs13412535-A	0.2349	2E-10		0.02775129	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2300	chr2	224877251	224877252	rs7576030	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q36.1	SERPINE2	rs7576030-?	NR	4E-14		0.02177713	[0.016-0.027] unit decrease	Illumina [27896057] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC1	5,360 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	7E-64		0.379709	[0.34-0.42] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UXS1	5,359 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	5E-26		0.248706	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYT11	5,365 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	5E-24		0.243893	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,364 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	1E-68		0.408581	[0.36-0.45] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,362 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	1E-39		0.310241	[0.26-0.36] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPBP	5,344 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	7E-35		0.264799	[0.22-0.31] unit decrease	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFA	5,358 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	6E-17		0.200353	[0.15-0.25] unit increase	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXADR	5,345 Icelandic ancestry individuals	NA	2q36.1		rs68066031-C	0.1963	3E-14		0.172093	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Platelet-derived growth factor subunit B levels	21,758 European ancestry individuals	9,173 individuals	2q36.1		rs68066031-T	0.77	2E-87		0.229	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q36.1	SERPINE2	rs68066031-C	0.231249	7E-31		0.03084891	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q36.1	NR	rs68066031-T	0.766365	9E-36		0.028693	[0.024-0.033] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q36.1	SERPINE2	rs68066031-T	0.8109375	6E-246	(SERPINE2, 3217_74_2)	1.0166423	[0.96-1.07] unit increase	Illumina [> 1000000] (imputed)	N
2300	chr2	224880497	224880498	rs68066031	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q36.1	SERPINE2	rs68066031-C	0.258	1E-46	(Glia-derived nexin, SERPINE2.3217.74.2)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
2300	chr2	224880513	224880514	rs4674842	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	2q36.1	SERPINE2	rs4674842-G	0.243	2E-6		0.031	[0.019-0.043] unit decrease	Illumina [7358575] (imputed)	N
2300	chr2	224900717	224900718	rs58116674	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs58116674-?	NR	3E-78				Illumina [11329225] (imputed)	N
2300	chr2	224900819	224900820	rs863957	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q36.1	NR	rs863957-T	0.639	3E-12	(Neutrophil-activating peptide 2, PPBP.2790.54.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2300	chr2	224902896	224902897	rs861442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q36.1	SERPINE2	rs861442-G	0.641	3E-12	(Neutrophil-activating peptide 2, PPBP.2790.54.2)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
2300	chr2	224906314	224906315	rs1438831	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SERPINE2	5,367 Icelandic ancestry individuals	NA	2q36.1		rs1438831-T	0.3829	4E-219		0.569406	[0.53-0.6] unit increase	Illumina [7506463] (imputed)	N
2300	chr2	224910344	224910345	rs282257	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OLFM3	5,343 Icelandic ancestry individuals	NA	2q36.1		rs282257-G	0.3903	6E-95		0.357566	[0.32-0.39] unit increase	Illumina [7506463] (imputed)	N
2300	chr2	224914799	224914800	rs282258	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	2q36.1	NR	rs282258-C		3E-6		0.073	[0.042-0.104] SD units decrease	NR [10700000] (imputed)	N
2300	chr2	224914799	224914800	rs282258	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	2q36.1	NR	rs282258-C		1E-9		0.0992	[0.067-0.131] SD units decrease	NR [10700000] (imputed)	N
2300	chr2	224914935	224914936	rs6722871	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine network levels (multivariate analysis)	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs6722871-?	NR	1E-59				Illumina [6022229] (imputed)	N
2300	chr2	224914935	224914936	rs6722871	31679650	Nath AP	2019-10-30	Am J Hum Genet	Multivariate Genome-Wide Association Analysis of a Cytokine Network Reveals Variants with Widespread Immune, Haematological, and Cardiometabolic Pleiotropy.	Cytokine levels	9,263 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs6722871-?	NR	4E-18	(PDGF-BB)			Illumina [6022229] (imputed)	N
2300	chr2	224917904	224917905	rs144959534	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2q36.1	NR	rs144959534-G	0.989895	9E-6		0.367	[0.21-0.53] unit increase	NR [9260588] (imputed)	N
2301	chr2	224943684	224943685	rs6740660	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (5-fluorouracil)	177 Japanese ancestry cases, 952 Japanese ancestry controls	NA	2q36.1	SERPINE2	rs6740660-G	0.894	4E-6	(Allelic model)	3.386	[1.87-6.131]	Illumina [733202]	N
2301	chr2	225047743	225047744	rs2629046	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q36.1	SERPINE2	rs2629046-T	0.55	8E-12		0.024	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
2301	chr2	225047773	225047774	rs2629047	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.1	intergenic	rs2629047-A	0.3943	2E-18		0.0162	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
2301	chr2	225047773	225047774	rs2629047	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.1		rs2629047-?	NR	1E-48				NR [~ 8900000] (imputed)	N
2302	chr2	225066512	225066513	rs2602680	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q36.1	NR	rs2602680-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2302	chr2	225069367	225069368	rs2219088	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q36.1	AC019109.1	rs2219088-C	NR	2E-9		0.0184961	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
2302	chr2	225072495	225072496	rs1453660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q36.1		rs1453660-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2302	chr2	225076148	225076149	rs978887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.1	AC104802.1	rs978887-G	NR	8E-10		0.017468	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
2302	chr2	225076479	225076480	rs978888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.1	AC104802.1	rs978888-T	NR	2E-8		0.0161235	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
2302	chr2	225076479	225076480	rs978888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q36.1	AC104802.1	rs978888-T	NR	6E-11		0.0204296	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
2302	chr2	225076479	225076480	rs978888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q36.1	NR	rs978888-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
2302	chr2	225122466	225122467	rs7578029	33110245	Ruotsalainen SE	2020-10-27	Eur J Hum Genet	An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.	Inflammatory biomarkers (multivariate analysis)	6,890 Finnish ancestry individuals	NA	2q36.1	SERPINE2	rs7578029-?	NR	1E-8		1.12		Illumina [11329225] (imputed)	N
2302	chr2	225130284	225130285	rs2287528	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q36.1	NR	rs2287528-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
2302	chr2	225180218	225180219	rs13024765	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.2	NR	rs13024765-C		1E-10		0.1014	[0.07-0.132] SD units increase	NR [10700000] (imputed)	N
2303	chr2	225184653	225184654	rs185701349	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	2q36.2	NR	rs185701349-G	NR	9E-6		0.6449	[0.36-0.93] SD units decrease	NR [10700000] (imputed)	N
2303	chr2	225187262	225187263	rs34354143	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.2		rs34354143-A	0.18	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
2303	chr2	225189864	225189865	rs4560103	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q36.2		rs4560103-G	0.29	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
2303	chr2	225189864	225189865	rs4560103	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.2	NR	rs4560103-G	0.2473	8E-9				NR [9056863] (imputed)	N
2303	chr2	225213814	225213815	rs113865232	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	2q36.2	NR	rs113865232-T	0.01	7E-7		2.63	unit decrease	Illumina [8591557] (imputed)	N
2303	chr2	225224090	225224091	rs760545501	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria (moderate to severe)	49,212 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q36.2	intergenic	rs760545501-T	0.00166	4E-10		2.364	[1.80-3.09]	Illumina [32500000] (imputed)	N
2303	chr2	225224090	225224091	rs760545501	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria	68,051 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q36.2	intergenic	rs760545501-T	0.00166	3E-8		2.071	[1.60-2.67]	Illumina [32500000] (imputed)	N
2303	chr2	225263526	225263527	rs6714462	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	2q36.2	FAM124B	rs6714462-T	0.151	8E-6		1.58	[1.29-1.93]	Illumina [7959153] (imputed)	N
2303	chr2	225300695	225300696	rs13400680	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2q36.2	FAM124B	rs13400680-A	0.7372	5E-7		0.0092	[0.0057-0.0127] unit increase	Affymetrix [~ 7740000] (imputed)	N
2303	chr2	225300695	225300696	rs13400680	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2q36.2	FAM124B	rs13400680-A	0.7373	2E-6		0.0087	[0.0052-0.0122] unit increase	Affymetrix [~ 7740000] (imputed)	N
2303	chr2	225302512	225302513	rs12328241	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.2		rs12328241-?	NR	8E-18				NR [~ 8900000] (imputed)	N
2303	chr2	225305875	225305876	rs188592169	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.2	NR	rs188592169-C		4E-7		0.2623	[0.16-0.36] SD units decrease	NR [10700000] (imputed)	N
2304	chr2	225335594	225335595	rs4674908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q36.2		rs4674908-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2304	chr2	225337187	225337188	rs13016316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.2		rs13016316-A	0.0908	2E-8		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2304	chr2	225347712	225347713	rs2047134	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	2q36.2	CUL3	rs2047134-A	0.673	3E-16		0.0103	[0.0078-0.0128] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
2304	chr2	225353648	225353649	rs12611472	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	2q36.2	NR	rs12611472-C	0.297	3E-12		0.018	[0.013-0.023] unit increase	NR [~ 10000000] (imputed)	N
2304	chr2	225357324	225357325	rs112567314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q36.2		rs112567314-C	NR	2E-34		0.1664	[0.14-0.19] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2304	chr2	225357324	225357325	rs112567314	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.2	CUL3	rs112567314-T	0.996	4E-33		0.1874	[0.16-0.22] unit decrease	Affymetrix [18391927] (imputed)	N
2304	chr2	225362477	225362478	rs3738952	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q36.2	Intergenic	rs3738952-T	0.0903	8E-17	(MTAG)	0.026	[0.02-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2304	chr2	225362477	225362478	rs3738952	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q36.2	Intergenic	rs3738952-C	0.9097	1E-14		0.0262	[0.02-0.033] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2304	chr2	225365634	225365635	rs4674916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q36.2	NR	rs4674916-A	0.328	1E-17		0.00981343	[0.0076-0.0121] unit decrease	NR [9732723] (imputed)	N
2304	chr2	225365634	225365635	rs4674916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q36.2	NR	rs4674916-A	0.327671	3E-11	(Conditioned on chr2:226332033)	0.01802615	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
2304	chr2	225365634	225365635	rs4674916	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.2	Intergenic	rs4674916-A	0.3361	1E-8	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2304	chr2	225377573	225377574	rs6748341	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	2q36.2	CUL3	rs6748341-C	0.684666	1E-11		0.0149484	[0.011-0.019] unit decrease	NR [16516521] (imputed)	N
2304	chr2	225377573	225377574	rs6748341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q36.2		rs6748341-?	NR	9E-10				NR [~ 8900000] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	2q36.2		rs11685299-?	NR	6E-10		0.0186	NR unit decrease	NR [4484088] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	2q36.2		rs11685299-?	NR	9E-12		0.0225	NR unit decrease	NR [4425810] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q36.2	NR	rs11685299-?	NR	3E-11		1.0621574	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q36.2	NR	rs11685299-?	NR	1E-8				Illumina [up to 5582932] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q36.2	CUL3	rs11685299-C	NR	4E-11		1.0683761	[1.05-1.09]	Illumina [6627481] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q36.2	CUL3	rs11685299-C	NR	1E-8	(EA)	1.0684903	[1.05-1.09]	Illumina [6627481] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q36.2	CUL3	rs11685299-?	NR	4E-9		1.062	[1.04-1.08]	Illumina [8000000] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q36.2	CUL3	rs11685299-C	NR	5E-12		1.0706638	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q36.2	NR	rs11685299-C	NR	4E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2304	chr2	225391295	225391296	rs11685299	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q36.2	CUL3	rs11685299-C	0.674	1E-8		1.0649627	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
2304	chr2	225405121	225405122	rs11687736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.2		rs11687736-A	0.6764	5E-12		0.0105	[0.0076-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2304	chr2	225405121	225405122	rs11687736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.2	Intergenic	rs11687736-A	0.6764	2E-14	(MTAG)	0.0109	[0.0082-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2304	chr2	225416508	225416509	rs191812979	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.2	NR	rs191812979-C		3E-7		0.2664	[0.17-0.37] SD units decrease	NR [10700000] (imputed)	N
2304	chr2	225418359	225418360	rs10933068	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q36.2	NR	rs10933068-A	0.321	5E-15		0.0122153	[0.0092-0.0153] unit increase	NR [9732723] (imputed)	N
2304	chr2	225439843	225439844	rs16866061	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	2q36.2	CUL3	rs16866061-?	NR	2E-8				Affymetrix [905761]	N
2305	chr2	225450367	225450368	rs3768884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q36.2		rs3768884-C	NR	2E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2305	chr2	225450813	225450814	rs138077627	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q36.2	CUL3	rs138077627-G	NR	6E-7		0.9695292	[0.6-1.33] unit decrease	Illumina [> 6200000] (imputed)	N
2305	chr2	225464776	225464777	rs78087832	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to bupropion and depression	2,675 European ancestry responder cases, 191,986 European ancestry healthy controls	NA	2q36.2	CUL3, DOCK10	rs78087832-?		6E-7		2.731	[1.933-3.857]	Illumina [~ 12000000] (imputed)	N
2305	chr2	225468328	225468329	rs35463868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.2	Intergenic	rs35463868-A	0.0912	7E-19	(MTAG)	0.0254	[0.02-0.031] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2305	chr2	225468328	225468329	rs35463868	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q36.2	Intergenic	rs35463868-C	0.9088	9E-13		0.0281	[0.02-0.036] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2305	chr2	225472984	225472985	rs7594223	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q36.2	NR	rs7594223-C	0.38	7E-10		0.00974425	[0.0066-0.0128] unit decrease	NR [9732723] (imputed)	N
2305	chr2	225472984	225472985	rs7594223	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q36.2	NR	rs7594223-C	0.382	2E-14		0.010429	[0.0078-0.0131] unit decrease	NR [~ 9732723] (imputed)	N
2305	chr2	225473262	225473263	rs7580488	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q36.2		rs7580488-C	0.621	9E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
2305	chr2	225473262	225473263	rs7580488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q36.2		rs7580488-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2305	chr2	225475559	225475560	rs56337305	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2q36.2	NR	rs56337305-C	0.375	5E-8		0.010282829	[0.0066-0.014] unit decrease	Affymetrix [NR] (imputed)	N
2305	chr2	225475559	225475560	rs56337305	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	2q36.2	NR	rs56337305-C	0.383	2E-10		0.009588381	[0.0066-0.0125] unit decrease	NR [~ 10000000] (imputed)	N
2305	chr2	225558041	225558042	rs1843834	23967269	Kim JH	2013-08-13	PLoS One	A genome-wide association study of total serum and mite-specific IgEs in asthma patients.	IgE levels in asthmatics (D.p. specific)	329 Korean ancestry D.p.-positive cases, 548 Korean ancestry D.p.-negative cases	NA	2q36.2	DOCK10	rs1843834-A	0.183	4E-6		2.14	[1.54-2.96]	Illumina [442089]	N
2306	chr2	225577790	225577791	rs35413825	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	2q36.2		rs35413825-A	0.3036	8E-7	(East Asian)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
2306	chr2	225590447	225590448	rs184996054	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.2	NR	rs184996054-C		1E-7		0.2718	[0.17-0.37] SD units decrease	NR [10700000] (imputed)	N
2306	chr2	225605530	225605531	rs112949165	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.2		rs112949165-?	NR	4E-22				NR [~ 8900000] (imputed)	N
2306	chr2	225623104	225623105	rs80176144	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q36.2	intergenic	rs80176144-?	NR	7E-6		0.399	[0.2-0.59] unit decrease	Illumina [at least 13000000] (imputed)	N
2306	chr2	225624790	225624791	rs80271406	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q36.2	NR	rs80271406-C	0.18	3E-6		0.45	[0.25-0.65] unit increase	Illumina [9469131] (imputed)	N
2306	chr2	225636058	225636059	rs7604021	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		DOCK10	rs7604021-A	0.41	1E-6				Illumina [1679420] (imputed)	N
2306	chr2	225669995	225669996	rs4674940	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	2q36.2	DOCK10, MIR4439, CUL3	rs4674940-G	0.032	6E-7		0.17	[0.1-0.24] unit decrease	Illumina [10000000] (imputed)	N
2306	chr2	225689420	225689421	rs57148205	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.2		rs57148205-A	0.2438	5E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2306	chr2	225696968	225696969	rs11681888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.2	Intergenic	rs11681888-A	0.6849	8E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2307	chr2	225712960	225712961	rs112637383	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q36.2	NR	rs112637383-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2307	chr2	225727662	225727663	rs6436515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q36.2		rs6436515-T	NR	3E-34		0.0366	[0.031-0.042] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2307	chr2	225744495	225744496	rs13424581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.2	DOCK10	rs13424581-C	0.07932	9E-217		0.13228782	[0.12-0.14] unit increase	Affymetrix [93095623] (imputed)	N
2307	chr2	225744495	225744496	rs13424581	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q36.2	DOCK10	rs13424581-C	0.0786	6E-61		0.1105726	[0.097-0.124] unit increase	Affymetrix [~ 2500000] (imputed)	N
2307	chr2	225747037	225747038	rs6757927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q36.2		rs6757927-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2307	chr2	225749156	225749157	rs6750856	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	2q36.2		rs6750856-C	0.843	8E-14				Affymetrix [10369434] (imputed)	N
2307	chr2	225749671	225749672	rs6712360	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	2q36.2		rs6712360-T	0.843	6E-17				Affymetrix [10369434] (imputed)	N
2307	chr2	225750752	225750753	rs10197805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.2	NR	rs10197805-C	0.150172	4E-60				Affymetrix, Illumina [23467995] (imputed)	N
2307	chr2	225750752	225750753	rs10197805	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q36.2	NR	rs10197805-C	0.15658	5E-59		0.041572	[0.037-0.047] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2307	chr2	225750752	225750753	rs10197805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q36.2	DOCK10	rs10197805-C	0.1555	3E-16		0.04037798	[0.031-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2307	chr2	225750860	225750861	rs2304336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q36.2	DOCK10	rs2304336-T	0.15693	4E-27		0.03280758	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225750860	225750861	rs2304336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q36.2	DOCK10	rs2304336-T	0.156965	2E-39		0.039843	[0.034-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225753341	225753342	rs10168795	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q36.2	DOCK10	rs10168795-G	0.1562	2E-22		0.04804986	[0.038-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2307	chr2	225759250	225759251	rs10165324	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q36.2	NR	rs10165324-A	0.080497	8E-27		0.036241	[0.03-0.043] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2307	chr2	225759617	225759618	rs11335710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q36.2	DOCK10	rs11335710-C	0.079435	2E-15		0.033181705	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225761258	225761259	rs7604674	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q36.2		rs7604674-T	NR	5E-19		0.0336	[0.026-0.041] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2307	chr2	225761258	225761259	rs7604674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q36.2	DOCK10	rs7604674-T	0.0789490000000001	2E-18		0.036534965	[0.028-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225761258	225761259	rs7604674	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.2	NR	rs7604674-T	0.0803934	2E-26				Affymetrix, Illumina [24588908] (imputed)	N
2307	chr2	225766162	225766163	rs2055710	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q36.2	DOCK10	rs2055710-A	0.1452	3E-12		0.03568662	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
2307	chr2	225777728	225777729	rs184582347	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	2q36.2	NR	rs184582347-G		5E-7		0.2654	[0.16-0.37] SD units decrease	NR [10700000] (imputed)	N
2307	chr2	225782300	225782301	rs78867455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q36.2	DOCK10	rs78867455-C	0.277694	8E-14		0.018751977	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2307	chr2	225782300	225782301	rs78867455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.2	NR	rs78867455-C	0.271666	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
2307	chr2	225782300	225782301	rs78867455	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q36.2	NR	rs78867455-C	0.277841	1E-14		0.017077	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2307	chr2	225786525	225786526	rs11675354	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.2	DOCK10	rs11675354-C	0.63749	3E-20		0.02189721	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2307	chr2	225806763	225806764	rs1857996	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q36.2	DOCK10	rs1857996-C	NR	8E-7		1.0761	NR	Affymetrix, Illumina [8278136] (imputed)	N
2307	chr2	225812040	225812041	rs869063	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	2q36.2		rs869063-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2307	chr2	225816641	225816642	rs116778355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q36.2	DOCK10	rs116778355-T	0.0211750000000001	1E-13		0.06147977	[0.045-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225816641	225816642	rs116778355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.2	DOCK10	rs116778355-T	0.021169	2E-83		0.16125907	[0.14-0.18] unit increase	Affymetrix [93095623] (imputed)	N
2307	chr2	225816641	225816642	rs116778355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q36.2	DOCK10	rs116778355-T	0.021176	2E-22		0.08090679	[0.065-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
2307	chr2	225816641	225816642	rs116778355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q36.2	DOCK10	rs116778355-T	0.0228	6E-21		0.1262435	[0.1-0.153] unit increase	Affymetrix [~ 2500000] (imputed)	N
2308	chr2	225851815	225851816	rs1449514	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q36.2		rs1449514-?	NR	9E-6		1.0377406	[1.02090197982544-1.05485700734131]	Illumina [up to 7827597] (imputed)	N
2308	chr2	225907149	225907150	rs397052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q36.2	NR	rs397052-T	0.46612	1E-16		0.015655	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2308	chr2	225913563	225913564	rs436427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q36.2		rs436427-A	NR	3E-16		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2308	chr2	225917579	225917580	rs2922755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q36.2		rs2922755-T	0.48082	2E-15		0.017580489	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2308	chr2	225917579	225917580	rs2922755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.2	NR	rs2922755-T	0.492616	4E-18				Affymetrix, Illumina [23472807] (imputed)	N
2308	chr2	225930866	225930867	rs79613098	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q36.2		rs79613098-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2308	chr2	225935260	225935261	rs6760820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q36.2		rs6760820-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2308	chr2	225942021	225942022	rs4674969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q36.2		rs4674969-C	NR	4E-9		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2309	chr2	226009837	226009838	rs2396190	26491034	Sarzynski MA	2015-10-21	Br J Sports Med	Genomic and transcriptomic predictors of triglyceride response to regular exercise.	Response to exercise (triglyceride level interaction)	478 European ancestry individuals from 99 families	NA	2q36.2	DOCK10	rs2396190-A	0.77	3E-7		0.45	[NR] unit decrease	Illumina [2396589] (imputed)	N
2309	chr2	226019277	226019278	rs4674973	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	2q36.2	intergenic	rs4674973-?		4E-6	(PC3)	0.0427	[NR] unit increase	Illumina [4167292] (imputed)	N
2309	chr2	226060685	226060686	rs13391754	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.2	NR	rs13391754-?	NR	5E-17				Affymetrix [NR]	N
2309	chr2	226082497	226082498	rs72964692	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs72964692-C	0.8138	4E-8	(conditional-joint)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2309	chr2	226092598	226092599	rs189536067	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2q36.3	NR	rs189536067-?	NR	4E-6		14.753	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2309	chr2	226094393	226094394	rs111641830	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2q36.3	NR	rs111641830-?	NR	4E-6		14.753	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2309	chr2	226094532	226094533	rs112372754	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	2q36.3	NR	rs112372754-?	NR	4E-6		14.753	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2310	chr2	226214737	226214738	rs10200522	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.3	NR	rs10200522-G	0.2919	6E-10				NR [9056863] (imputed)	N
2310	chr2	226222231	226222232	rs11682369	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.3		rs11682369-A	0.27	1E-15		7.99	z score increase	Affymetrix [9061022] (imputed)	N
2310	chr2	226222231	226222232	rs11682369	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q36.3		rs11682369-A	0.27	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
2310	chr2	226225622	226225623	rs1473307	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	2q36.3	NYAP2	rs1473307-T	0.5715	3E-7		0.1441	[0.089-0.199] years decrease	NR [NR]	N
2311	chr2	226237909	226237910	rs1517484	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	2q36.3	intergenic	rs1517484-C	NR	5E-7	(earlier onset)			Perlegen [429981]	N
2311	chr2	226255934	226255935	rs191495917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	2q36.3		rs191495917-A	NR	8E-15		1.1932	[0.89-1.49] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
2311	chr2	226259372	226259373	rs12690535	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	2q36.3		rs12690535-G	0.179	5E-14		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
2311	chr2	226259372	226259373	rs12690535	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	2q36.3	NYAP2	rs12690535-A	0.8108	1E-9		0.015510468	[0.01-0.021] unit increase	Affymetrix [11514654] (imputed)	N
2311	chr2	226281991	226281992	rs1517480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.3	Intergenic	rs1517480-T	0.1988	1E-10	(MTAG)	0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2311	chr2	226281991	226281992	rs1517480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.3	Intergenic	rs1517480-T	0.1995	9E-14	(MTAG)	0.0122	[0.0091-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2311	chr2	226281991	226281992	rs1517480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q36.3	Intergenic	rs1517480-T	0.1998	3E-11	(MTAG)	0.019	[0.013-0.025] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2311	chr2	226286008	226286009	rs7572027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	2q36.3		rs7572027-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2311	chr2	226290704	226290705	rs13015496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs13015496-C	0.1842	5E-11		0.0119	[0.0084-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2311	chr2	226306992	226306993	rs1517500	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q36.3	NYAP2	rs1517500-C	0.17255	3E-8		0.0140382	[0.0091-0.019] unit decrease	Affymetrix [NR] (imputed)	N
2311	chr2	226332032	226332033	rs4674993	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q36.3	NR	rs4674993-G	0.2	4E-20		0.0123643	[0.0097-0.015] unit decrease	NR [9732723] (imputed)	N
2311	chr2	226332032	226332033	rs4674993	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	2q36.3	NR	rs4674993-G	0.2	5E-14		0.024005337	[0.018-0.03] unit decrease	NR [~ 10000000] (imputed)	N
2311	chr2	226349199	226349200	rs2163413	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	2q36.3	NR	rs2163413-G	0.179	1E-10		0.0123293	[0.0086-0.0161] unit increase	NR [9732723] (imputed)	N
2311	chr2	226352797	226352798	rs6436559	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	2q36.3	KIAA1486	rs6436559-?	NR	3E-6		3.34	[1.95-5.71]	Illumina [498081]	N
2311	chr2	226353553	226353554	rs1431071	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	2q36.3	NR	rs1431071-T	0.285132756711664	5E-12		0.0070234374	[0.005-0.009] unit decrease	NR [NR]	N
2311	chr2	226353553	226353554	rs1431071	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	2q36.3	NR	rs1431071-T	0.285132756711664	7E-12		0.008610017	[0.0061-0.0111] unit decrease	NR [NR]	N
2311	chr2	226353553	226353554	rs1431071	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	2q36.3	NR	rs1431071-T	0.285132756711664	4E-12		0.011224812	[0.008-0.0144] unit decrease	NR [NR]	N
2311	chr2	226353553	226353554	rs1431071	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	2q36.3	NR	rs1431071-T	0.285132756711664	1E-11		0.00915281	[0.0065-0.0118] unit decrease	NR [NR]	N
2311	chr2	226353553	226353554	rs1431071	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	2q36.3	NR	rs1431071-T	0.285132756711664	4E-12		0.0071683964	[0.0051-0.0092] unit decrease	NR [NR]	N
2311	chr2	226353553	226353554	rs1431071	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	2q36.3		rs1431071-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2311	chr2	226360416	226360417	rs6737187	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	2q36.3	NR	rs6737187-A	0.293	1E-10		0.0108357	[0.0075-0.0141] unit decrease	NR [9732723] (imputed)	N
2311	chr2	226360416	226360417	rs6737187	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	2q36.3	NR	rs6737187-A	NR	2E-8		5.607	z score decrease	Affymetrix [10847151] (imputed)	N
2311	chr2	226360416	226360417	rs6737187	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	2q36.3	NYAP2	rs6737187-A	0.299488	2E-8		5.64	z score decrease	NR [10847151] (imputed)	N
2312	chr2	226486751	226486752	rs2054079	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	2q36.3	NYAP2	rs2054079-C	NR	4E-10		0.00838069	[0.0058-0.011] unit decrease	Affymetrix [10061374] (imputed)	N
2312	chr2	226487455	226487456	rs144069827	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q36.3	NYAP2	rs144069827-T	0.0132783730943343	9E-8	(G_Barnesiella_HB)	1.34581	[0.85-1.84] unit decrease	Illumina [7711310] (imputed)	N
2313	chr2	226530274	226530275	rs2014896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs2014896-T	0.6856	5E-12	(conditional-joint)	0.0105	[0.0076-0.0134] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2313	chr2	226538646	226538647	rs6736992	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.3	Intergenic	rs6736992-A	0.3154	3E-8	(MTAG)	0.0098	[0.0063-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2313	chr2	226538742	226538743	rs10498193	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q36.3		rs10498193-A	0.06	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
2313	chr2	226545529	226545530	rs2396261	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	2q36.3	NR	rs2396261-T	0.7948	1E-6		0.0321	[0.019-0.045] unit decrease	Illumina [up to 1980188] (imputed)	N
2313	chr2	226563258	226563259	rs16866701	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	2q36.3	NYAP2	rs16866701-?		6E-11	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
2313	chr2	226609240	226609241	rs12694681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs12694681-T	0.6883	2E-11		0.0102	[0.0073-0.0131] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2313	chr2	226609240	226609241	rs12694681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.3	Intergenic	rs12694681-T	0.6883	6E-12	(MTAG)	0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2313	chr2	226609240	226609241	rs12694681	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q36.3	NR	rs12694681-T	0.6877	2E-8		0.0135667315	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2313	chr2	226614307	226614308	rs56094667	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.3		rs56094667-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2313	chr2	226618382	226618383	rs10172113	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q36.3		rs10172113-T	0.2463	2E-7		37.22933	z score increase	NR [6814003]	N
2313	chr2	226622220	226622221	rs116238841	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	2q36.3	NR	rs116238841-A	0.03	2E-6		1.28	[1.18-1.38]	Illumina [8468885] (imputed)	N
2313	chr2	226622220	226622221	rs116238841	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	2q36.3	NYAP2, LOC646736	rs116238841-A	0.030546796	6E-6		1.327899	[1.173993165-1.501981212]	Illumina [10439017] (imputed)	N
2314	chr2	226684885	226684886	rs183131780	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q36.3	NYAP2	rs183131780-T	0.002	3E-17	(EA)	0.201	[0.15-0.25] unit increase	NR [12082474] (imputed)	N
2314	chr2	226684885	226684886	rs183131780	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2q36.3	NYAP2, LOC646736	rs183131780-T	0.002	7E-11		0.13566	[0.095-0.176] unit increase	Affymetrix [11709857] (imputed)	N
2314	chr2	226684885	226684886	rs183131780	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2q36.3	MIR548AR, LOC646736	rs183131780-T	0.002	2E-22		0.19055	[0.15-0.23] unit increase	Affymetrix [11709857] (imputed)	N
2314	chr2	226692506	226692507	rs112028523	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q36.3		rs112028523-?	NR	7E-13				NR [~ 8900000] (imputed)	N
2314	chr2	226751993	226751994	rs139441245	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.3	intergenic	rs139441245-A	0.0109	2E-10		0.0595	[0.041-0.078] unit decrease	Affymetrix [18391927] (imputed)	N
2315	chr2	226855424	226855425	rs12620554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q36.3	NR	rs12620554-C	NR	1E-9		0.0202	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2315	chr2	226867994	226867995	rs6436586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs6436586-G	NR	2E-11		0.019787	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
2315	chr2	226867994	226867995	rs6436586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs6436586-G	NR	2E-11		0.0199257	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
2315	chr2	226867994	226867995	rs6436586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs6436586-G	NR	2E-9		0.0179386	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
2316	chr2	226895737	226895738	rs113403741	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q36.3	NR	rs113403741-G	NR	3E-9		0.0361	[0.024-0.048] unit increase	Affymetrix [9000000] (imputed)	N
2316	chr2	226901105	226901106	rs10187290	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs10187290-G	NR	1E-9		0.0177847	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
2316	chr2	226903749	226903750	rs1403364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs1403364-A	NR	3E-11		0.02241	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2316	chr2	226903749	226903750	rs1403364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs1403364-A	NR	4E-11		0.0222734	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2316	chr2	226905130	226905131	rs10432549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs10432549-C	NR	7E-9		0.0197165	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
2316	chr2	226905130	226905131	rs10432549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	2q36.3	AC080002.1	rs10432549-C	NR	2E-9		0.0203991	[0.014-0.027] unit decrease	Affymetrix [321169] (imputed)	N
2316	chr2	226925724	226925725	rs62189029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q36.3	NR	rs62189029-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
2316	chr2	226980375	226980376	rs10198241	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	2q36.3	intergenic	rs10198241-C	0.608	1E-6	(AA)	0.487	unit increase	Illumina [at least 5086170] (imputed)	N
2316	chr2	226985503	226985504	rs185291443	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	2q36.3	NYAP2	rs185291443-A	9.0E-4	7E-26		0.539	[0.44-0.64] unit increase	Affymetrix [19420026] (imputed)	N
2316	chr2	226985503	226985504	rs185291443	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	2q36.3	NR	rs185291443-A	9.0E-4	1E-28		1.6267	[1.34-1.91] unit increase	Affymetrix [19420026] (imputed)	N
2316	chr2	226992453	226992454	rs1522811	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	2q36.3	NR	rs1522811-A	0.226	2E-9		0.0129	[0.0088-0.017] unit decrease	NR [~ 27400000] (imputed)	N
2316	chr2	227000985	227000986	rs6758183	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios	2q36.3	intergenic	rs6758183-A	NR	3E-6		1.39	[1.21-1.57]	Illumina [460528]	N
2316	chr2	227011319	227011320	rs13422522	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (model adjusted for BMI)	16,753 European ancestry individuals	13,354 European ancestry individuals	2q36.3	NYAP2	rs13422522-C	0.77	1E-11		0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
2316	chr2	227011319	227011320	rs13422522	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	2q36.3	NYAP2	rs13422522-C	0.77	9E-11		0.005674	[0.0014-0.01] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
2317	chr2	227019304	227019305	rs2948566	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.3	Intergenic	rs2948566-T	0.483	9E-9	(MTAG)	0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2317	chr2	227019415	227019416	rs72979712	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	2q36.3	NEU2	rs72979712-T	0.0495993	3E-8		0.0117773	[0.0076-0.0159] unit increase	Affymetrix [9463307] (imputed)	N
2317	chr2	227019460	227019461	rs10181515	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	2q36.3	LOC646736, COL4A4, IRS1	rs10181515-T	0.224502	2E-12		0.021433	[0.015-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
2317	chr2	227020398	227020399	rs13404263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q36.3		rs13404263-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2317	chr2	227020493	227020494	rs1522802	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.3	intergenic	rs1522802-A	0.2181	5E-13		0.0171	[0.012-0.022] unit increase	Affymetrix [18391927] (imputed)	N
2317	chr2	227020520	227020521	rs1522803	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.3	Intergenic	rs1522803-T	0.4477	3E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2317	chr2	227020652	227020653	rs7578326	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q36.3	intergenic	rs7578326-G	0.3539	3E-13	(EA)	0.0796	[0.058-0.101] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227020652	227020653	rs7578326	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (model adjusted for BMI)	16,753 European ancestry individuals	13,354 European ancestry individuals	2q36.3	IRS1	rs7578326-A	NR	7E-9		0.06	[0.040-0.080] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
2317	chr2	227020652	227020653	rs7578326	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	2q36.3	IRS1	rs7578326-A		5E-20		1.11	[1.08-1.13]	Affymetrix, Illumina [2426886] (imputed)	N
2317	chr2	227026863	227026864	rs13423088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs13423088-T	0.682982	4E-17		0.0362094	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
2317	chr2	227026863	227026864	rs13423088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs13423088-T	0.682982	2E-20		0.0394073	[0.031-0.048] unit increase	NR [11722792] (imputed)	N
2317	chr2	227026863	227026864	rs13423088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs13423088-T	0.682982	2E-9		0.0263224	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227026863	227026864	rs13423088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs13423088-T	0.682982	9E-19		0.0378532	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
2317	chr2	227026863	227026864	rs13423088	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs13423088-T	0.682982	2E-9		0.0262305	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227028732	227028733	rs2894586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q36.3		rs2894586-T	0.459465	1E-10		0.014239726	[0.0099-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
2317	chr2	227029688	227029692	rs149689033	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	2q36.3		rs149689033-C	0.37	3E-9		0.094	[0.063-0.125] unit increase	Illumina [16607452] (imputed)	N
2317	chr2	227034498	227034499	rs6713510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q36.3		rs6713510-A	NR	2E-8		0.0092	[0.0061-0.0123] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	2E-14		0.0340798	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	2E-14		0.0340798	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	4E-10		0.0272889	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	4E-10		0.0272889	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	2E-13		0.0324624	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036553	227036553	rs36083960	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs36083960-C,rs36083960-C	0.684225	2E-13		0.0324624	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036602	227036603	rs4072096	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	2q36.3	NR	rs4072096-A	NR	3E-9		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2317	chr2	227036602	227036603	rs4072096	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	2q36.3	LOC646736	rs4072096-C	0.49	1E-8		0.014	[0.01-0.018] unit increase	Illumina [6108953] (imputed)	N
2317	chr2	227036602	227036603	rs4072096	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	2q36.3	NR	rs4072096-A	0.510729697072304	1E-9		0.016502118	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227036910	227036911	rs62188784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q36.3		rs62188784-C	0.681388	2E-19		0.0387711	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
2317	chr2	227036910	227036911	rs62188784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs62188784-C	0.681319	5E-10		0.0271201	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036910	227036911	rs62188784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q36.3		rs62188784-C	0.681318	4E-19		0.03783	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036910	227036911	rs62188784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs62188784-C	0.681319	3E-17		0.0362714	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227036910	227036911	rs62188784	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q36.3		rs62188784-C	0.681318	1E-12		0.0307387	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227038817	227038818	rs4645008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q36.3	AC068138.1	rs4645008-C	NR	1E-9		0.0172169	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
2317	chr2	227038817	227038818	rs4645008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q36.3	AC068138.1	rs4645008-C	NR	5E-10		0.0175412	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	3E-76		0.038	mmol/L decrease	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	2E-39		0.026	nmol/L increase	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	3E-125				NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	2E-100		0.04	mmol/L increase	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	1E-23		0.016	% increase	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	4E-17		0.017	U/L decrease	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	2q36.3		rs2943653-C	0.33	4E-34		0.025	U/L decrease	NR [NR] (imputed)	N
2317	chr2	227047770	227047771	rs2943653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q36.3		rs2943653-?	NR	6E-13				NR [~ 8900000] (imputed)	N
2317	chr2	227057577	227057578	rs55726223	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q36.3	NR	rs55726223-A	NR	4E-9		0.0343	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
2317	chr2	227062079	227062080	rs952227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	2q36.3		rs952227-G	NR	5E-12		0.0499	[0.036-0.064] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2317	chr2	227062079	227062080	rs952227	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q36.3	NR	rs952227-G	0.672739	2E-13		0.0541774	[0.04-0.068] unit increase	Affymetrix [17914406] (imputed)	N
2317	chr2	227065810	227065811	rs2972154	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	2q36.3		rs2972154-C	0.461158	1E-8		0.0221527	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
2317	chr2	227068079	227068080	rs2943634	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	2q36.3	AC068138.1	rs2943634-A	0.326679	1E-11		0.058035314	[0.041-0.075] unit decrease	Affymetrix [7288503] (imputed)	N
2317	chr2	227068079	227068080	rs2943634	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q36.3	intergenic	rs2943634-A	0.3324	2E-9		0.0409	[0.028-0.054] unit decrease	NR [8041861] (imputed)	N
2317	chr2	227068079	227068080	rs2943634	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA	2q36.3	IRS1	rs2943634-A	0.380538425555148	1E-12		0.020344472	[0.015-0.026] unit decrease	Illumina [197481]	N
2317	chr2	227068079	227068080	rs2943634	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2q36.3	IRS1	rs2943634-A	0.3377	2E-14		0.001446	[0.00025-0.00264] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
2317	chr2	227068079	227068080	rs2943634	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	2q36.3	IRS1	rs2943634-A	0.3398	7E-8		0.0157	[0.0096-0.0218] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
2317	chr2	227068079	227068080	rs2943634	17634449	Samani NJ	2007-07-18	N Engl J Med	Genomewide association analysis of coronary artery disease.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	875 European ancestry cases, 1,644 European ancestry controls	2q36.3	pseudogene	rs2943634-C	0.65	2E-7		1.21	[1.13-1.30]	Affymetrix [377857]	N
2317	chr2	227073853	227073854	rs1515098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs1515098-C	0.319069	1E-20		0.0397462	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227073853	227073854	rs1515098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs1515098-C	0.319069	2E-12		0.0305893	[0.022-0.039] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227073853	227073854	rs1515098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	2q36.3		rs1515098-C	0.319069	3E-13		0.0315662	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227073853	227073854	rs1515098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q36.3		rs1515098-C	0.319018	5E-26		0.0446065	[0.036-0.053] unit increase	NR [11722792] (imputed)	N
2317	chr2	227073853	227073854	rs1515098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q36.3		rs1515098-C	0.319018	3E-25		0.043896	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2317	chr2	227073853	227073854	rs1515098	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q36.3	NR	rs1515098-T	0.680427	9E-9		0.0153085	[0.01-0.021] unit increase	Affymetrix [16585745] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	1E-19		0.038777	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	1E-21		0.0405525	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	5E-21		0.0401239	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	2E-20		0.0394207	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	3E-14		0.0329205	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	3E-22		0.0411454	[0.033-0.049] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	8E-11		0.0283198	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320175	2E-9		0.0263224	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	4E-20		0.0391468	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	7E-21		0.0398786	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	7E-22		0.0408155	[0.032-0.049] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	2E-8		0.024788	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	1E-18		0.0377002	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227077376	227077377	rs2943635	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943635-C	0.320168	2E-19		0.0384265	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227083410	227083411	rs1399627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q36.3		rs1399627-G	NR	1E-21		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2317	chr2	227087283	227087284	rs2943636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs2943636-A	0.473499	5E-13				Affymetrix, Illumina [24653286] (imputed)	N
2317	chr2	227087283	227087284	rs2943636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q36.3	NR	rs2943636-A	0.488953	2E-15		0.014695	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2317	chr2	227087283	227087284	rs2943636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q36.3	NR	rs2943636-A	0.488975	2E-10		0.011775	[0.0082-0.0154] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2317	chr2	227087283	227087284	rs2943636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q36.3		rs2943636-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2317	chr2	227087283	227087284	rs2943636	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	2q36.3	IRS1	rs2943636-G		2E-7	(WCadjBMI, men)			Affymetrix, Illumina [2846694] (imputed)	N
2317	chr2	227088576	227088577	rs2943637	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q36.3		rs2943637-C	0.489339	2E-14		0.016778132	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2317	chr2	227088576	227088577	rs2943637	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q36.3	NR	rs2943637-C	0.489199	1E-14		0.014195	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
2317	chr2	227092149	227092150	rs2972149	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q36.3	NYAP2, IRS1	rs2972149-A	0.47944	2E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
2317	chr2	227092404	227092405	rs1515104	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	2q36.3		rs1515104-T	0.347826	1E-17		0.0358326	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227092404	227092405	rs1515104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q36.3		rs1515104-A	NR	7E-22		0.0754	[0.06-0.091] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	1E-10		0.0256463	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	2E-17		0.0328711	[0.025-0.04] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	4E-14		0.0294073	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	6E-15		0.0305911	[0.023-0.038] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	4E-20		0.0350052	[0.028-0.042] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	3E-13		0.0290165	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	4E-18		0.0345509	[0.027-0.042] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	1E-17		0.033924	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	2q36.3		rs2176040-A	0.353258	5E-14		0.0297076	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q36.3		rs2176040-G	NR	2E-13		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q36.3	NR	rs2176040-A	0.353686	3E-36		0.0151408	[0.013-0.018] unit increase	Affymetrix [16585854] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q36.3	NR	rs2176040-A	0.353686	2E-25		0.0148675	[0.012-0.018] unit increase	Affymetrix [16585866] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q36.3	IRS1	rs2176040-A	0.3557	3E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q36.3	IRS1	rs2176040-A	0.3557	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q36.3	IRS1	rs2176040-A	0.3557	5E-7		0.0191	[0.012-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q36.3	IRS1	rs2176040-A	0.3557	4E-7	(men)	0.0282	[0.017-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q36.3	IRS1	rs2176040-A	0.3557	2E-7	(men)	0.0253	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2317	chr2	227092801	227092802	rs2176040	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q36.3	LOC646736	rs2176040-A	0.365	6E-6	(EA)	0.014	[0.008-0.0202] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2317	chr2	227092801	227092802	rs2176040	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q36.3	LOC646736	rs2176040-A	0.365	1E-8	(EA, men)	0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2317	chr2	227092801	227092802	rs2176040	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q36.3	LOC646736	rs2176040-A	0.362	1E-6		0.015	[0.0088-0.0206] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2317	chr2	227092801	227092802	rs2176040	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q36.3	IRS1	rs2176040-A	0.3654	1E-12	(EA, men)	0.0343	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	2E-20		0.0385382	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	4E-18		0.0362694	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	4E-18		0.0362244	[0.028-0.044] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	8E-11		0.0275803	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	1E-19		0.0376651	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	2E-10		0.0269233	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	2E-14		0.0321735	[0.024-0.04] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943640-A	0.348152	1E-13		0.0312871	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q36.3	intergenic	rs2943640-?	NR	1E-52		0.0418	[0.037-0.047] unit decrease	Affymetrix [5701386] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q36.3	intergenic	rs2943640-C	0.6362	5E-18		0.078	[0.060-0.096] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	2q36.3	Intergenic	rs2943640-C	0.6362	3E-15	(EA)	0.0822	[0.062-0.103] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	2q36.3	IRS1	rs2943640-C	0.63	7E-9		1.09	[1.05-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q36.3	IRS1	rs2943640-C	NR	3E-8	(men)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q36.3	IRS1	rs2943640-C	NR	1E-9	(female)	1.11	[1.07-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	2q36.3	IRS1	rs2943640-C	0.634514929084023	3E-14		1.1	[1.07-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2317	chr2	227093584	227093585	rs2943640	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	2q36.3	IRS1	rs2943640-C	0.63	4E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q36.3	NR	rs2943641-T	0.352774	1E-65		0.0143553	[0.013-0.016] unit increase	Affymetrix [16582909] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q36.3	NR	rs2943641-T	0.352774	2E-46		0.0134909	[0.012-0.015] unit increase	Affymetrix [16582965] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	2q36.3	IRS1	rs2943641-C	0.646472027428808	1E-21		0.05694029	unit decrease	Illumina [265780]	N
2317	chr2	227093744	227093745	rs2943641	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943641-T	NR	1E-23		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943641-T	0.355	1E-21	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943641-T	NR	3E-26		0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943641-T	0.355	2E-23	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227093744	227093745	rs2943641	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	Insulin levels in response to oral glucose tolerance test (fasting)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	2q36.3	IRS1, NYAP2	rs2943641-T	0.357	2E-7		0.048	[0.03-0.066] unit decrease	Illumina [at least 81396]	N
2317	chr2	227093744	227093745	rs2943641	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	2q36.3	LOC64673, IRS1	rs2943641-C	0.63	9E-12		1.19	[1.13-1.25]	Illumina [392365]	N
2317	chr2	227094757	227094758	rs2203452	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q36.3	intergenic	rs2203452-A	0.3482	9E-52		0.0417	[0.036-0.047] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2317	chr2	227095158	227095159	rs2138161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q36.3		rs2138161-C	NR	1E-74		0.0419	[0.037-0.046] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2317	chr2	227095158	227095159	rs2138161	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	2q36.3	NEU2	rs2138161-T	0.351852	8E-28		0.0752413	[0.062-0.089] unit decrease	Affymetrix [9463307] (imputed)	N
2317	chr2	227095219	227095220	rs2222018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q36.3	NR	rs2222018-C	0.351735	5E-31		0.0140449	[0.012-0.016] unit increase	Affymetrix [16582621] (imputed)	N
2317	chr2	227095219	227095220	rs2222018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q36.3	NR	rs2222018-C	0.351735	1E-24		0.0130731	[0.011-0.016] unit increase	Affymetrix [16582614] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-25		0.0392772	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-19		0.0349185	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	8E-23		0.0372447	[0.03-0.045] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q36.3		rs1024137-G	0.35351	1E-18		0.0335819	[0.026-0.041] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-25		0.0393663	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-26		0.0401356	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-30		0.0436096	[0.036-0.051] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	2E-29		0.0427504	[0.035-0.05] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2q36.3		rs1024137-G	0.353499	6E-21		0.0358164	[0.028-0.043] unit increase	NR [11722792] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass and leg lean mass (pleiotropy)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	2q36.3	IRS1	rs1024137-T	NR	4E-13				Affymetrix, Illumina [6879267] (imputed)	N
2317	chr2	227095875	227095876	rs1024137	32719433	Liu Y	2020-07-27	Int J Obes (Lond)	Four pleiotropic loci associated with fat mass and lean mass.	Leg fat mass (lean adjusted)	9,684 European ancestry individuals, 1,541 Han Chinese ancestry individuals, 847 African American individuals, 445 Hispanic individuals	370,097 European ancestry individuals	2q36.3	IRS1	rs1024137-T	NR	9E-15		0.017	NR unit decrease	Affymetrix, Illumina [6879267] (imputed)	N
2317	chr2	227098186	227098186	rs56256300	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q36.3		rs56256300-AT	NR	7E-67		0.0397	[0.035-0.044] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
2317	chr2	227098386	227098387	rs1515114	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	2q36.3		rs1515114-?	NR	2E-9		0.00547725	[0.0037-0.0073] unit decrease	NR [NR]	N
2317	chr2	227099179	227099180	rs2943645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q36.3		rs2943645-T	NR	3E-11		0.0134	[0.0095-0.0173] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	47,806 European ancestry men	NA	2q36.3	IRS1	rs2943645-C	0.37627	1E-8		0.022202	[0.015-0.03] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting insulin	105,056 European ancestry individuals	NA	2q36.3	IRS1	rs2943645-C	0.37627	7E-7		0.012569	[0.0076-0.0175] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q36.3	IRS1	rs2943645-C	0.353402	1E-83		0.0402176	[0.036-0.044] unit decrease	Affymetrix [NR] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q36.3	IRS1	rs2943645-C	0.353333	9E-106		0.0434402	[0.04-0.047] unit increase	Affymetrix [NR] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q36.3	IRS1	rs2943645-C	0.353233	2E-61		0.0338545	[0.03-0.038] unit increase	Affymetrix [NR] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943645-C	NR	2E-23		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943645-C	0.358	1E-21	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943645-C	NR	2E-25		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943645-C	0.358	9E-23	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099179	227099180	rs2943645	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	2q36.3	IRS1	rs2943645-T	0.63	3E-6		0.029	[0.017-0.041] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	2q36.3	LOC646736	rs2943646-A	0.3706	8E-39		0.025	[0.021-0.029] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q36.3	intergenic	rs2943646-A	0.3475	6E-17		0.2825	[0.22-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943646-A	NR	3E-23		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943646-A	0.358	1E-21	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943646-A	NR	2E-25		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099533	227099534	rs2943646	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2943646-A	0.358	9E-23	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227099853	227099854	rs2972147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q36.3		rs2972147-C	0.64655	5E-14		0.017661914	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q36.3		rs2972146-G	0.35365	5E-12		0.0273114	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2972146-G	NR	3E-23		0.04	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2972146-G	0.357	8E-22	(EA)	0.041	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2972146-G	NR	9E-25		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2972146-G	0.357	2E-22	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	2q36.3	LOC646736	rs2972146-T	0.65	1E-9		1.06	[1.04-1.07]	Affymetrix [9061845] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	2q36.3	IRS1	rs2972146-T	0.623	2E-14	(Trans-ethnic initial)	0.0281	[0.021-0.035] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	2q36.3	Intergenic	rs2972146-T	0.6539	4E-7		0.2342	[0.14-0.32] mmHg increase	Illumina [242296]	N
2317	chr2	227100697	227100698	rs2972146	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Hypertension	up to 83,330 European ancestry cases, up to 73,760 European ancestry controls, up to 9,322 South Asian ancestry cases, up to 16,861 South Asian ancestry controls	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	2q36.3	intergenic	rs2972146-T	0.6548	2E-7		5.224	z score increase	Illumina [242296]	N
2317	chr2	227100697	227100698	rs2972146	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	2q36.3	Intergenic	rs2972146-T	0.6541	1E-9		0.1706	[0.12-0.23] mmHg increase	Illumina [242296]	N
2317	chr2	227100697	227100698	rs2972146	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	2q36.3	IRS1	rs2972146-G	0.37	3E-15		0.028	[NR] mg/dL decrease	NR [NR] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q36.3	IRS1	rs2972146-G	0.37	2E-17		0.032	[NR] unit increase	NR [NR] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	2q36.3	IRS1	rs2972146-C	0.37	2E-8		1.89	[1.15-2.63] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2317	chr2	227100697	227100698	rs2972146	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	2q36.3	IRS1	rs2972146-C	0.37	2E-9		0.46	[0.3-0.62] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2317	chr2	227101308	227101309	rs2972145	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q36.3	NR	rs2972145-C	0.6354	7E-80		0.09	[0.081-0.099] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2317	chr2	227101410	227101411	rs2972144	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	2q36.3	IRS1	rs2972144-?	NR	2E-12				NR [NR]	N
2317	chr2	227101410	227101411	rs2972144	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	2q36.3	IRS1	rs2972144-G	0.6385	2E-46		1.1	[1.08-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2317	chr2	227101410	227101411	rs2972144	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q36.3	MIR5702	rs2972144-A	0.354633108192389	3E-34		0.0913	[0.077-0.106] unit decrease	NR [5035015] (imputed)	N
2317	chr2	227103716	227103717	rs2138157	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	2q36.3	LOC646736	rs2138157-A	0.3678	7E-6		0.0051	[0.0026-0.0076] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
2317	chr2	227103716	227103717	rs2138157	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q36.3	intergenic	rs2138157-A	0.3332	3E-9		0.1542	[0.1-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	6E-24		0.0416504	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	4E-19		0.0373653	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	9E-24		0.0419178	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	2E-21		0.0395435	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349372	3E-16		0.0339204	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349372	2E-19		0.0372675	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349372	2E-16		0.0340375	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349372	3E-19		0.0371855	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	7E-20		0.0379725	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	1E-28		0.0457661	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349372	1E-13		0.030324	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	5E-22		0.0400074	[0.032-0.048] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	9E-27		0.0440053	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2972140-T	0.349363	3E-25		0.0418421	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q36.3	LOC646736, MIR5702	rs2972140-?		6E-10		0.034	[0.023-0.045] unit decrease	Illumina [31500000] (imputed)	N
2317	chr2	227104110	227104111	rs2972140	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	2q36.3	NR	rs2972140-T	0.355	1E-11	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-30		0.0466234	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	7E-20		0.0378732	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-25		0.04329	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	3E-31		0.0473939	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	6E-20		0.0385769	[0.03-0.047] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-26		0.0438378	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	6E-24		0.0421856	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	8E-27		0.0434147	[0.035-0.051] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	5E-30		0.0470302	[0.039-0.055] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	5E-9		0.0243029	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	1E-11		0.0274419	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	2q36.3		rs2943650-C	0.35525	8E-15		0.0312748	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	2q36.3		rs2943650-C	0.35525	7E-33		0.0476696	[0.04-0.055] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	5E-14		0.0316224	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-25		0.0427516	[0.035-0.051] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	5E-27		0.0440148	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	4E-26		0.0407191	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-26		0.043596	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	9E-24		0.0383378	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	9E-34		0.0494689	[0.041-0.057] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	6E-9		0.024578	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	3E-11		0.0276494	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	3E-12		0.0282071	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-32		0.0479106	[0.04-0.056] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-24		0.0423161	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-18		0.0366564	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	1E-10		0.0269278	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-27		0.0419599	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-31		0.0473329	[0.039-0.055] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	3E-29		0.0459035	[0.038-0.054] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-19		0.037753	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	2E-25		0.0436629	[0.035-0.052] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943650-C	0.355246	6E-11		0.0272614	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q36.3	NR	rs2943650-T	0.65	1E-10		0.0123	[0.0085-0.0161] unit increase	NR [NR]	N
2317	chr2	227105920	227105921	rs2943650	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q36.3		rs2943650-T	0.645169	4E-11		0.015304514	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q36.3	NR	rs2943650-C	0.3616	2E-81		0.0805	[0.072-0.089] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2317	chr2	227105920	227105921	rs2943650	21706003	Kilpelainen TO	2011-06-26	Nat Genet	Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.	Adiposity	29,069 European ancestry individuals, 7,557 Indian Asian ancestry individuals	39,576 European ancestry individuals	2q36.3	IRS1	rs2943650-T	0.64	4E-11		0.03	[NR] % decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227106216	227106217	rs2972138	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	2q36.3		rs2972138-A	0.354156	5E-18		0.0360663	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
2317	chr2	227106216	227106217	rs2972138	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.3	NR	rs2972138-?	NR	3E-11	(male)	0.17936	[0.13-0.23] unit decrease	Affymetrix [7794483] (imputed)	N
2317	chr2	227106216	227106217	rs2972138	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.3	NR	rs2972138-?	NR	2E-6		0.10507	[0.062-0.148] unit decrease	Affymetrix [7794483] (imputed)	N
2317	chr2	227107034	227107035	rs2972136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q36.3		rs2972136-G	NR	1E-16		0.0214	[0.016-0.026] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
2317	chr2	227107500	227107501	rs1913657	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	2q36.3		rs1913657-C	0.355035	4E-10		0.027051	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2317	chr2	227107500	227107501	rs1913657	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	2q36.3		rs1913657-T	0.36060000000000003	5E-9		0.0623	[0.042-0.083] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
2317	chr2	227107500	227107501	rs1913657	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	2q36.3		rs1913657-T	0.3526	1E-10		0.0457	[0.032-0.06] unit increase	Affymetrix, Illumina [28462191] (imputed)	N
2317	chr2	227107500	227107501	rs1913657	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q36.3	intergenic	rs1913657-T	0.6215	2E-55		0.0433	[0.038-0.049] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355194	4E-9		0.0246206	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355193	1E-16		0.0346144	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355193	6E-16		0.0339891	[0.026-0.042] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355193	3E-11		0.0279588	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355193	1E-13		0.0311511	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355193	2E-11		0.0280462	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355197	6E-9		0.0243001	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	2q36.3		rs2943652-C	0.355196	2E-8		0.023147	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	1E-12				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and triglycerides (pairwise)	500,123 European ancestry individuals,16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	1E-16				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	7E-10				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting insulin (pairwise)	374,012 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and coronary artery disease (pairwise)	464,176 European ancestry individuals, 59,353 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	3E-9				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	7E-20				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	4E-20				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	4E-27				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and systolic blood pressure (pairwise)	240,784 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting insulin (pairwise)	142,394 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	2E-18				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and coronary artery disease (pairwise)	232,558 European ancestry individuals, 52,463 East Asian, South Asian, Middle Eastern, Hispanic and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	2q36.3	NYAP2-IRS1	rs2943652-C	0.3748	7E-32				Affymetrix, Illumina [2331072] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	2q36.3		rs2943652-?	NR	5E-14				NR [~ 8900000] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q36.3	IRS1	rs2943652-C	0.37	2E-10	(European men)	0.044	[0.03-0.058] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q36.3	IRS1	rs2943652-C	0.37	1E-9	(European)	0.03	[0.02-0.04] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q36.3	IRS1	rs2943652-C	0.36	2E-12		0.034	[0.024-0.044] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
2317	chr2	227108445	227108446	rs2943652	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	2q36.3	IRS1	rs2943652-C	0.36	1E-12	(men)	0.046	[0.033-0.059] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
2317	chr2	227111435	227111437	rs140581697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q36.3		rs140581697-T	NR	9E-20		0.0211	[0.017-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2317	chr2	227111435	227111437	rs140581697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q36.3		rs140581697-T	NR	5E-15		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2317	chr2	227111435	227111437	rs140581697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q36.3		rs140581697-T	NR	6E-35		0.0288	[0.024-0.033] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
2317	chr2	227111435	227111437	rs140581697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q36.3		rs140581697-T	0.645129	7E-16		0.018597074	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q36.3		rs2943654-C	0.354881	3E-27		0.0437331	[0.036-0.052] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	1E-20		0.0359695	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	1E-16		0.0343796	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	5E-14		0.0300878	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	1E-16		0.0332643	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	3E-18		0.0338103	[0.026-0.041] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	2E-29		0.045355	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	1E-25		0.0404212	[0.033-0.048] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	7E-28		0.0442709	[0.036-0.052] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	7E-29		0.0451049	[0.037-0.053] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	6E-24		0.0392043	[0.032-0.047] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	2q36.3		rs2943654-C	0.35487	5E-12		0.0290079	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2q36.3	IRS1	rs2943654-?	NR	4E-18		0.0022	[0.0016-0.0028] unit decrease	Affymetrix [21347608] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2q36.3	IRS1	rs2943654-?	NR	1E-40		0.0058	[0.0048-0.0068] unit decrease	Affymetrix [21347608] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2q36.3	LOC646736	rs2943654-C	0.353914	1E-38		0.00522133	[0.0044-0.006] unit decrease	Affymetrix [13995440] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q36.3	NYAP2, IRS1	rs2943654-T	0.65	8E-9		5.76	z-score increase	Affymetrix [4314223] (imputed)	N
2317	chr2	227112753	227112754	rs2943654	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q36.3	NYAP2, IRS1	rs2943654-T	0.65	2E-20		9.25	z-score increase	Affymetrix [4312306] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972143-A	0.354126	2E-25		0.0423854	[0.034-0.05] unit decrease	NR [11722792] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	2q36.3		rs2972143-A	0.354129	2E-11		0.0278975	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q36.3		rs2972143-G	NR	1E-14		0.0769	[0.057-0.096] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	8E-22				Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	2E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	6E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	2E-21				Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	1E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	7E-8	(EA)	0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	1E-6	(Asian)	0.021	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	1E-12		0.014	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	6E-6	(Asian)	0.02	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	5E-8		0.014	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	6E-28				Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	4E-25	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	9E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	4E-31				Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	3E-11		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	1E-10	(EA)	0.008	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	2q36.3	LOC646736, MIR5702	rs2972143-G	NR	6E-6		0.005407	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	2q36.3		rs2972143-?	NR	2E-16				NR [~ 8900000] (imputed)	N
2317	chr2	227116364	227116365	rs2972143	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	2q36.3	IRS1	rs2972143-A	0.373	2E-19	(Trans-ethnic initial)	0.0318	[0.025-0.039] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2317	chr2	227117697	227117698	rs2972155	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	2q36.3	AC068138.1	rs2972155-C	0.346629	2E-12		0.08623803	[0.062-0.11] unit decrease	Affymetrix [7288503] (imputed)	N
2317	chr2	227117697	227117698	rs2972155	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q36.3	NR	rs2972155-G	0.646	1E-8		0.00786986	[0.0052-0.0106] unit decrease	NR [~ 9732723] (imputed)	N
2317	chr2	227117777	227117778	rs2972156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972156-C	0.354173	2E-15		0.0329664	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
2317	chr2	227117777	227117778	rs2972156	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	2q36.3		rs2972156-C	0.354173	7E-23		0.0403768	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
2317	chr2	227121917	227121918	rs2943656	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q36.3	LOC646736, MIR5702	rs2943656-?		3E-13		0.0358	[0.026-0.045] unit increase	Illumina [31500000] (imputed)	N
2317	chr2	227121917	227121918	rs2943656	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	2q36.3	IRS1	rs2943656-G	NR	3E-10		1.1089349		Affymetrix, Illumina [~ 13000000] (imputed)	N
2317	chr2	227121917	227121918	rs2943656	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Lean body mass	37,450 European ancestry individuals, 842 Old Order Amish individuals	47,227 European ancestry individuals, 380 African American individuals, 8,034 Korean ancestry individuals, 7,834 Indian ancestry individuals	2q36.3	IRS1	rs2943656-?	0.38	2E-11		0.14	[0.1-0.18] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
2317	chr2	227121917	227121918	rs2943656	28724990	Zillikens MC	2017-07-19	Nat Commun	Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.	Appendicular lean mass	27,488 European ancestry individuals, 842 Old Order Amish individuals	42,360 European ancestry individuals, 380 African American individuals, 2,350 Korean ancestry individuals	2q36.3	IRS1	rs2943656-?	0.38	2E-10		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [at least 1912063] (imputed)	N
2317	chr2	227122215	227122216	rs1515110	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	2q36.3		rs1515110-T	0.6352	2E-6		0.0054	[0.0032-0.0076] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2317	chr2	227122215	227122216	rs1515110	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	2q36.3	NR	rs1515110-T	NR	2E-7		0.022	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2317	chr2	227123085	227123086	rs1515108	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q36.3	IRS1	rs1515108-T	0.6228	5E-9	(EA, men)	0.029	[0.019-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2317	chr2	227123438	227123439	rs2943657	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	2q36.3	IRS1	rs2943657-T	0.26	3E-9		1.12	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	2q36.3		rs2943658-G	NR	1E-10		0.0354	[0.025-0.046] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q36.3	IRS1	rs2943658-A	0.3614	1E-6	(women)	0.0263	[0.016-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q36.3	IRS1	rs2943658-A	0.3614	1E-6	(men)	0.0267	[0.016-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q36.3	IRS1	rs2943658-A	0.3661	4E-9	(men)	0.037	[0.025-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q36.3	IRS1	rs2943658-A	0.3606	6E-8	(women)	0.0336	[0.021-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q36.3	IRS1	rs2943658-?	0.3614	3E-8	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227123583	227123584	rs2943658	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q36.3	IRS1	rs2943658-?	0.3614	3E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2317	chr2	227125415	227125416	rs1399626	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	2q36.3		rs1399626-T	0.359346	5E-12		0.029405	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
2317	chr2	227128542	227128543	rs2943660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	2q36.3		rs2943660-G	NR	9E-11		0.0371	[0.026-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2317	chr2	227128542	227128543	rs2943660	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	2q36.3	AC068138.1	rs2943660-T	0.363073	9E-10		0.038290348	[0.026-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
2317	chr2	227128916	227128917	rs1515100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs1515100-C	NR	2E-20		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227128916	227128917	rs1515100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs1515100-C	0.367	7E-20	(EA)	0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227128916	227128917	rs1515100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs1515100-C	NR	2E-23		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227128916	227128917	rs1515100	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs1515100-C	0.367	1E-20	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
2317	chr2	227130854	227130855	rs566561215	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		2q36.3	intergenic	rs566561215-C	0.0163462	3E-6		1.4782	[0.87-2.09] unit decrease	Illumina [640625] (imputed)	N
2317	chr2	227133526	227133527	rs2396316	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q36.3		rs2396316-A	0.363417	1E-10		0.0276692	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
2317	chr2	227133528	227133529	rs2396315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs2396315-T	0.685997	5E-12				Affymetrix, Illumina [24332387] (imputed)	N
2317	chr2	227134515	227134516	rs2713538	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	2q36.3		rs2713538-?	NR	2E-8		0.00513549	[0.0034-0.0069] unit decrease	NR [NR]	N
2318	chr2	227149196	227149196	rs567779929	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q36.3	NR	rs567779929-?		3E-10	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2318	chr2	227149196	227149196	rs567779929	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	2q36.3	NR	rs567779929-?		6E-11	(Inferior fronto-occipital fasciculus)			NR [8955960] (imputed)	N
2318	chr2	227149578	227149579	rs6436606	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.3	NR	rs6436606-?	NR	4E-6				Affymetrix [NR]	N
2318	chr2	227159866	227159867	rs2673140	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	2q36.3	IRS1	rs2673140-G	0.38	2E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2318	chr2	227163641	227163642	rs2713536	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2713536-C	NR	2E-20		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2318	chr2	227163641	227163642	rs2713536	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2713536-C	0.366	2E-18	(EA)	0.038	unit decrease	Affymetrix [at least 7091467] (imputed)	N
2318	chr2	227163641	227163642	rs2713536	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2713536-C	NR	5E-22		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
2318	chr2	227163641	227163642	rs2713536	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	2q36.3	NR	rs2713536-C	0.366	3E-19	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
2318	chr2	227163641	227163642	rs2713536	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	2q36.3	IRS1	rs2713536-C	0.38	3E-10		0.038	[0.026-0.05] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
2318	chr2	227164652	227164653	rs2673136	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	2q36.3	IRS1	rs2673136-A	0.6387	4E-9		5.872	[NR] z score decrease	Affymetrix [14069427] (imputed)	N
2318	chr2	227169703	227169704	rs77312202	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2q36.3		rs77312202-?	NR	3E-6		0.7414326	[0.43-1.05] unit decrease	Illumina [9875426] (imputed)	N
2318	chr2	227169703	227169704	rs77312202	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	2q36.3		rs77312202-?	NR	6E-7		0.8464646	[0.52-1.18] unit decrease	Illumina [9842460] (imputed)	N
2318	chr2	227171602	227171603	rs2713557	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol use disorder	57,564 European ancestry cases, 256,395 European ancestry controls	NA	2q36.3	NR	rs2713557-T	0.3562	2E-8		5.619	[NR] unit increase	Affymetrix [7003540] (imputed)	N
2318	chr2	227172430	227172430	rs10683904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q36.3		rs10683904-GGTGT	NR	7E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2318	chr2	227172430	227172430	rs10683904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q36.3		rs10683904-GGTGT	0.418955	3E-11		0.015251971	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2318	chr2	227173609	227173610	rs5839154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q36.3	NR	rs5839154-T	0.646303	8E-13		0.016999347	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2318	chr2	227173609	227173610	rs5839154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	2q36.3	NR	rs5839154-T	0.646309	2E-17		0.020243077	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2318	chr2	227173609	227173610	rs5839154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q36.3		rs5839154-T	0.646329	1E-13		0.017626192	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2318	chr2	227174982	227174983	rs2673148	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	2q36.3	AC068138.1	rs2673148-?		2E-8				Illumina [5041948] (imputed)	N
2318	chr2	227177201	227177202	rs2673147	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.3		rs2673147-C	0.46	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
2318	chr2	227179629	227179630	rs925735	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	2q36.3	NR	rs925735-G	0.6379	1E-12		0.015132835	[0.011-0.019] unit decrease	Affymetrix [10613246] (imputed)	N
2318	chr2	227179629	227179630	rs925735	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	2q36.3	NR	rs925735-G	0.632	3E-11		0.011878559	[0.0084-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
2318	chr2	227179629	227179630	rs925735	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	2q36.3	IRS1	rs925735-G	0.64	2E-8		0.02	[0.012-0.028] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2318	chr2	227182518	227182519	rs79615915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q36.3	NR	rs79615915-C	NR	2E-11		0.0216	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227182518	227182519	rs79615915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q36.3	NR	rs79615915-C	NR	7E-11		0.022	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227184230	227184231	rs115420636	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q36.3	NR	rs115420636-T	NR	5E-10		0.0385	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227185748	227185749	rs10804330	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	2q36.3	AC068138.1	rs10804330-C	0.429504	3E-13		0.04184494	[0.031-0.053] unit decrease	Affymetrix [7288503] (imputed)	N
2318	chr2	227185850	227185851	rs180771047	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	2q36.3	LOC646736, MIR5702	rs180771047-G	0.0027	6E-8		0.3689	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2318	chr2	227190082	227190084	rs3052071	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q36.3	intergenic	rs3052071-TACACAC		4E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2318	chr2	227192442	227192443	rs7590201	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q36.3	LOC646736, MIR5702	rs7590201-G		3E-8		0.216	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2318	chr2	227192442	227192443	rs7590201	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q36.3	LOC646736, MIR5702	rs7590201-G		8E-9		0.138	unit decrease	Affymetrix [at least 2696785] (imputed)	N
2318	chr2	227198157	227198158	rs12994089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.3	AC068138.1	rs12994089-A	NR	1E-8		0.0184342	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	2E-31		0.028	[0.023-0.033] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	3E-21		0.0239	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	3E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	2E-10		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	4E-34		0.0306	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	1E-10		0.0158	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	5E-12		0.0166	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	5E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	3E-21		0.0238	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227198982	227198983	rs10194882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q36.3	NR	rs10194882-A	NR	1E-19		0.0218	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227201708	227201709	rs10933138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q36.3	NR	rs10933138-G	NR	2E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2318	chr2	227202251	227202252	rs11684509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q36.3	NR	rs11684509-A	NR	5E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2318	chr2	227205604	227205605	rs12694695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q36.3	AC068138.1	rs12694695-A	NR	3E-9		0.0196064	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
2318	chr2	227205604	227205605	rs12694695	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q36.3	NR	rs12694695-A	0.249	5E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
2318	chr2	227205620	227205620	rs71299684	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q36.3	NR	rs71299684-GCCTGGCTA	0.551551	2E-8		0.05381	[0.035-0.073] unit increase	Affymetrix [21375087] (imputed)	N
2318	chr2	227205782	227205783	rs35414396	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q36.3	NR	rs35414396-G	0.259648	2E-10		0.0707454	[0.049-0.093] unit increase	Affymetrix [21375087] (imputed)	N
2318	chr2	227205782	227205783	rs35414396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q36.3		rs35414396-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2318	chr2	227226951	227226952	rs12479355	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	2q36.3		rs12479355-A	NR	4E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2318	chr2	227226951	227226952	rs12479355	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q36.3	intergenic	rs12479355-A	0.79	2E-8	(EA)	1.0416667	[1.02-1.06] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
2318	chr2	227229343	227229344	rs57074291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q36.3	IRS1	rs57074291-C	0.739362	4E-10		0.0141049	[0.0097-0.0185] unit increase	Affymetrix [NR] (imputed)	N
2318	chr2	227229343	227229344	rs57074291	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q36.3	IRS1	rs57074291-C	0.739309	1E-9		0.0131032	[0.0089-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
2318	chr2	227255369	227255370	rs7582516	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q36.3	NR	rs7582516-T	0.304811	2E-14		0.0561458	[0.042-0.071] unit increase	Affymetrix [17914406] (imputed)	N
2318	chr2	227259963	227259964	rs17246129	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.3	intergenic	rs17246129-A	0.3044	1E-35		0.0254	[0.021-0.029] unit increase	Affymetrix [18391927] (imputed)	N
2318	chr2	227259963	227259964	rs17246129	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.3	NR	rs17246129-?	NR	5E-8	(male)	0.20752	[0.13-0.28] unit increase	Affymetrix [7794483] (imputed)	N
2318	chr2	227259963	227259964	rs17246129	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q36.3	NR	rs17246129-?	NR	3E-11		0.15917	[0.11-0.21] unit increase	Affymetrix [7794483] (imputed)	N
2318	chr2	227264610	227264611	rs10048834	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	2q36.3	NR	rs10048834-C	0.300922	8E-11		0.0689102	[0.048-0.09] unit increase	Affymetrix [21375087] (imputed)	N
2318	chr2	227271839	227271840	rs13017230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs13017230-A	0.156601	6E-42				Affymetrix, Illumina [24588908] (imputed)	N
2318	chr2	227277689	227277690	rs71429200	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	2q36.3		rs71429200-G	0.807	4E-9				Affymetrix [10369434] (imputed)	N
2319	chr2	227287717	227287718	rs35669853	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q36.3	MIR5702	rs35669853-A	0.1823	1E-9		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2319	chr2	227287717	227287718	rs35669853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	2q36.3	intergenic	rs35669853-A	0.1948	4E-9		0.02665776	[0.018-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227287717	227287718	rs35669853	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	2q36.3	intergenic	rs35669853-A	0.1948	2E-11		0.03052791	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227291414	227291415	rs11686139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q36.3		rs11686139-C	NR	7E-26		0.0291	[0.024-0.035] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2319	chr2	227291414	227291415	rs11686139	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q36.3	intergenic	rs11686139-C	0.194	6E-13		0.03256872	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q36.3		rs11676298-G	NR	5E-15		0.0223	[0.017-0.028] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q36.3		rs11676298-G	NR	6E-18		0.0251	[0.019-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	2q36.3	IRS1	rs11676298-?	NR	6E-13		0.0631	NR L decrease	Affymetrix [9390170] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192325	6E-38		0.036798764	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.3		rs11676298-G	0.19226	5E-16		0.023183057	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192288	7E-23		0.028103745	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q36.3		rs11676298-G	0.19221	4E-19		0.025021145	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192231	1E-12		0.019934596	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192256	1E-17		0.02396664	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192359	9E-14		0.021243442	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192261	2E-16		0.0223693	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192236	1E-12		0.019955717	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q36.3		rs11676298-G	0.192232	4E-20		0.025646335	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.190196	2E-42		0.031836	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.166847	1E-23				Affymetrix, Illumina [23467995] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.190748	1E-26		0.025337	[0.021-0.03] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.158895	3E-13				Affymetrix, Illumina [21126107] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.19156	5E-16		0.0207	[0.016-0.026] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.1669	2E-28				Affymetrix, Illumina [23472807] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q36.3	NR	rs11676298-G	0.19074	3E-29		0.026968	[0.022-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2319	chr2	227291730	227291731	rs11676298	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q36.3	intergenic	rs11676298-G	0.1932	4E-10		0.02858069	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227292655	227292656	rs555450919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q36.3		rs555450919-C	NR	7E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2319	chr2	227296994	227296995	rs11684299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q36.3	intergenic	rs11684299-T	0.1941	5E-20		0.04250255	[0.033-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227296994	227296995	rs11684299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q36.3	intergenic	rs11684299-T	0.1941	8E-12		0.03112179	[0.022-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227326632	227326633	rs116376456	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.3		rs116376456-?	NR	1E-56				NR [~ 8900000] (imputed)	N
2319	chr2	227333837	227333838	rs35661897	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	2q36.3	NR	rs35661897-?	NR	5E-6		0.046	[0.026-0.066] unit decrease	Illumina [at least 560000] (imputed)	N
2319	chr2	227334154	227334156	rs373518068	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q36.3	intergenic	rs373518068-A	0.2115	6E-15		0.03570669	[0.027-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
2319	chr2	227339460	227339461	rs13008686	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	2q36.3	NR	rs13008686-G	0.3354	7E-6	(EA)	0.0302	[0.017-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
2319	chr2	227344206	227344207	rs13029395	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q36.3	MIR5702	rs13029395-T	0.1842	6E-10		0.0034	[0.0022-0.0046] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
2319	chr2	227346888	227346889	rs13402729	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q36.3	Intergenic	rs13402729-?		3E-6		1.07	[1.04-1.09]	Illumina [7645193] (imputed)	N
2319	chr2	227346888	227346889	rs13402729	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q36.3	Intergenic	rs13402729-?		1E-6		1.74	[1.39-2.18]	Illumina [7645193] (imputed)	N
2319	chr2	227347680	227347681	rs7574352	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (family Peptococcaceae id.2024)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q36.3		rs7574352-T	NR	1E-9		6.0526648	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
2319	chr2	227360821	227360822	rs35025897	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	2q36.3	NR	rs35025897-A	NR	2E-9		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2319	chr2	227368065	227368066	rs183587141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q36.3	MIR5702	rs183587141-T	NR	8E-10		0.0691083	[0.047-0.091] unit decrease	Affymetrix [321016] (imputed)	N
2320	chr2	227419387	227419388	rs188878307	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	2q36.3	NR	rs188878307-C	0.0129871	4E-8		0.16678	[0.11-0.23] unit increase	Affymetrix [17914406] (imputed)	N
2320	chr2	227451480	227451481	rs559021322	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q36.3	Intergenic	rs559021322-?		4E-6		1.13	[1.07-1.19]	Illumina [7645193] (imputed)	N
2320	chr2	227451480	227451481	rs559021322	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q36.3	Intergenic	rs559021322-?		2E-6		3.63	[2.14-6.17]	Illumina [7645193] (imputed)	N
2320	chr2	227459950	227459951	rs71431010	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	2q36.3	MIR5702	rs71431010-A	5.0E-4	2E-28		0.749	[0.62-0.88] unit increase	Affymetrix [19420026] (imputed)	N
2320	chr2	227476406	227476407	rs76008570	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	2q36.3		rs76008570-G	NR	9E-6	(GLM)	0.274	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
2320	chr2	227529243	227529244	rs2222890	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q36.3	NR	rs2222890-?	NR	9E-6		657.9915	NR unit increase	Illumina [2379855]	N
2321	chr2	227555533	227555534	rs9808454	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs9808454-A	0.527652	2E-19				Affymetrix, Illumina [17210439] (imputed)	N
2321	chr2	227556381	227556382	rs10933152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q36.3		rs10933152-G	0.466727	6E-17		0.019039195	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2321	chr2	227556382	227556383	rs10933153	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q36.3		rs10933153-C	0.46913	2E-15		0.01779967	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2321	chr2	227556382	227556383	rs10933153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q36.3	NR	rs10933153-A	0.530819	7E-21		0.018132	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2321	chr2	227557058	227557059	rs17266887	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.3	NR	rs17266887-?	NR	1E-9				Affymetrix [NR]	N
2321	chr2	227562138	227562139	rs7558386	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	2q36.3	intergenic	rs7558386-G	NR	1E-7	(MCI)			Illumina [498205]	N
2321	chr2	227586605	227586606	rs11683087	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	2q36.3	LOC646736, IRS1	rs11683087-?		7E-7	(M)	20.54	[12.95-28.13] unit increase	Illumina [693128]	N
2321	chr2	227646833	227646834	rs75187262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q36.3	IRS1	rs75187262-T	0.0460850000000001	8E-16		0.04314176	[0.033-0.054] unit increase	Affymetrix [93095623] (imputed)	N
2321	chr2	227646833	227646834	rs75187262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q36.3	IRS1	rs75187262-T	0.046061	5E-13		0.038412187	[0.028-0.049] unit increase	Affymetrix [93095623] (imputed)	N
2321	chr2	227646833	227646834	rs75187262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q36.3	IRS1	rs75187262-T	0.046061	3E-13		0.038833357	[0.028-0.049] unit increase	Affymetrix [93095623] (imputed)	N
2321	chr2	227650478	227650478	rs148549648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q36.3		rs148549648-CT	NR	1E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2321	chr2	227650478	227650478	rs148549648	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q36.3	NR	rs148549648-C	0.936289	4E-11		0.0111433	[0.0078-0.0145] unit increase	Affymetrix [16582909] (imputed)	N
2321	chr2	227650984	227650985	rs78034425	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q36.3	IRS1	rs78034425-C	0.919351	6E-9		0.0194946	[0.013-0.026] unit decrease	NR [13737936] (imputed)	N
2321	chr2	227650984	227650985	rs78034425	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q36.3		rs78034425-?	NR	5E-13				NR [~ 8900000] (imputed)	N
2321	chr2	227650984	227650985	rs78034425	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q36.3		rs78034425-?	NR	1E-9		0.0222964	[0.015-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
2321	chr2	227651445	227651446	rs17508368	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	2q36.3	IRS1	rs17508368-T	0.0649	2E-6		0.0188	[0.011-0.027] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
2321	chr2	227660640	227660641	rs142101835	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body fat percentage	19,480 British ancestry individuals from 6863 families.	NA	2q36.3	IRS1	rs142101835-G	0.0022	3E-8		5.5365014	[3.57-7.5] % increase	Illumina [24111857] (imputed)	N
2321	chr2	227661002	227661003	rs41265094	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q36.3	IRS1	rs41265094-C	0.9853	1E-17		0.0629	[0.049-0.077] unit decrease	Affymetrix [18391927] (imputed)	N
2321	chr2	227661002	227661003	rs41265094	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	2q36.3	IRS1	rs41265094-C	0.985	2E-14		0.08	[0.06-0.1] unit decrease	Affymetrix [18391927] (imputed)	N
2322	chr2	227699917	227699918	rs10192769	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q36.3	IRS1	rs10192769-?	NR	2E-6	(leucine)	0.21402222	[0.13-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2322	chr2	227700817	227700818	rs13015698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.3		rs13015698-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2322	chr2	227731961	227731962	rs139662037	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	2q36.3	RHBDD1	rs139662037-C	9.883E-4	3E-7		12.9	3.618-46.03	Illumina [164395]	N
2322	chr2	227773465	227773466	rs3820928	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q36.3		rs3820928-T	0.5938	4E-9		0.1290596	[0.085-0.174] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
2322	chr2	227773465	227773466	rs3820928	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q36.3		rs3820928-T	0.5934	1E-8		0.07733193	[0.05-0.105] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
2322	chr2	227773465	227773466	rs3820928	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	2q36.3	RHBDD1	rs3820928-?	NR	5E-6	(ppFEV1)			Affymetrix [70897]	N
2322	chr2	227781862	227781863	rs10165767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q36.3	RHBDD1	rs10165767-G	0.570113	7E-9	(10 ms)	0.0324833	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
2322	chr2	227781862	227781863	rs10165767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q36.3	RHBDD1	rs10165767-G	0.570113	6E-9	(6 ms)	0.0317987	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
2322	chr2	227781862	227781863	rs10165767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q36.3	RHBDD1	rs10165767-G	0.570113	2E-9	(8 ms)	0.0329486	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
2323	chr2	227804818	227804819	rs67513858	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q36.3		rs67513858-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2323	chr2	227875359	227875360	rs10182307	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	2q36.3	COL4A4	rs10182307-A	0.4315	5E-10		0.1644	[0.11-0.22] mmHg decrease	Affymetrix [NR] (imputed)	N
2323	chr2	227876686	227876687	rs35483183	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q36.3	COL4A4	rs35483183-A	0.123	3E-11	(EA)	0.021	[0.015-0.027] unit increase	NR [12082474] (imputed)	N
2323	chr2	227876686	227876687	rs35483183	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2q36.3	COL4A4	rs35483183-A	0.123	2E-8		0.01502	[0.0098-0.0203] unit increase	Affymetrix [11709857] (imputed)	N
2323	chr2	227876686	227876687	rs35483183	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2q36.3	COL4A4	rs35483183-A	0.123	5E-9		0.0149	[0.0099-0.0199] unit increase	Affymetrix [11709857] (imputed)	N
2323	chr2	227890282	227890283	rs2177596	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q36.3	COL4A4	rs2177596-T	0.438	5E-6		0.017	[0.0094-0.0236] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2323	chr2	227890282	227890283	rs2177596	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q36.3	COL4A4	rs2177596-T	0.437	6E-6	(EA)	0.017	[0.0095-0.0241] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2323	chr2	227892719	227892720	rs2229813	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q36.3		rs2229813-T	0.4301	2E-8		0.12833022	[0.082-0.175] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
2323	chr2	227892719	227892720	rs2229813	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	2q36.3		rs2229813-T	0.442	8E-10		0.08361886	[0.056-0.111] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
2323	chr2	227915923	227915924	rs2272205	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2q36.3	COL4A4	rs2272205-G		3E-9	(AA)			Illumina [NR]	N
2323	chr2	227917082	227917083	rs35138315	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	2q36.3		rs35138315-?	NR	2E-13		0.275447	[0.2-0.35] unit increase	NR [9800000] (imputed)	N
2323	chr2	227917082	227917083	rs35138315	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary microalbumin levels	102,944 European ancestry individuals, 2,679 African ancestry individuals, 2,560 South Asian ancestry individuals	NA	2q36.3	NR	rs35138315-C	NR	6E-37		0.7722	[0.65-0.89] unit increase	Affymetrix [9000000] (imputed)	N
2323	chr2	227922014	227922015	rs4566357	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q36.3	COL4A4	rs4566357-A	0.3873	7E-6		0.026	[0.015-0.037] unit increase	NR [8041861] (imputed)	N
2324	chr2	227941980	227941981	rs57858280	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	2q36.3	COL4A4	rs57858280-T	NR	9E-11		0.0191	[0.013-0.025] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
2324	chr2	227942518	227942519	rs7597336	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	2q36.3	COL4A4	rs7597336-A	0.8726	2E-11		0.0199876	[0.014-0.026] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
2324	chr2	227956621	227956622	rs10203008	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q36.3	COL4A4	rs10203008-?	NR	2E-16		0.5586	[0.42-0.69] unit increase	Affymetrix [11100000] (imputed)	N
2324	chr2	228003641	228003642	rs59904869	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	2q36.3	Intergenic	rs59904869-C	NR	4E-7	(between families)	5.054	unit decrease	Affymetrix [up to 15107142] (imputed)	N
2324	chr2	228006254	228006255	rs10498218	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Body mass index	19,900 British ancestry individuals from 6863 families.	NA	2q36.3	COL4A4	rs10498218-G	0.00122179	4E-8		0.94184786	[0.61-1.28] kg/m2 decrease	Illumina [24111857] (imputed)	N
2325	chr2	228069009	228069010	rs6756117	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	2q36.3	COL4A3	rs6756117-?	NR	2E-10		0.4179	[0.28-0.56] unit increase	Affymetrix [11100000] (imputed)	N
2325	chr2	228086919	228086920	rs11884770	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	2q36.3	COL4A3	rs11884770-?	NR	3E-8	(EA)	1.1111112		Illumina [12023830] (imputed)	N
2325	chr2	228091573	228091574	rs56144414	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q36.3	NR	rs56144414-A		3E-8		0.07	[0.05-0.09] unit increase	NR [NR]	N
2325	chr2	228092034	228092035	rs35212277	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	2q36.3	BC035052, AK056332, COL4A3	rs35212277-A		9E-6		0.2664	unit increase	Illumina [5767231] (imputed)	N
2325	chr2	228093171	228093172	rs7569375	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q36.3	COL4A3	rs7569375-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
2325	chr2	228093666	228093667	rs11884740	32804141	Wang RZ	2020-08-10	J Alzheimers Dis	Genome-Wide Association Study of Brain Alzheimer's Disease-Related Metabolic Decline as Measured by [18F] FDG-PET Imaging.	Cerebral glucose metabolic decline (right angular gyrus)	67 European ancestry Alzheimer's disease cases, 323 European ancestry mild cognitive impairment cases, 196 European ancestry individuals with normal cognition	NA	2q36.3		rs11884740-?	0.208	6E-7		2.611	unit increase	Illumina [278989]	N
2325	chr2	228121100	228121101	rs55703767	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Macroalbuminuria in type 1 diabetes	2,751 European ancestry cases, 12,124 European ancestry controls	NA	2q36.3	COL4A3	rs55703767-G	0.794	9E-9		1.2820514	[NR]	Illumina [up to 49000000] (imputed)	N
2325	chr2	228121100	228121101	rs55703767	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Kidney disease (reduced eGFR and albuminuria or end stage renal disease) in type 1 diabetes	2,987 European ancestry cases, 11,766 European ancestry controls	NA	2q36.3	COL4A3	rs55703767-G	0.794	5E-9		1.2987013	[NR]	Illumina [up to 49000000] (imputed)	N
2325	chr2	228121100	228121101	rs55703767	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Kidney disease (end stage renal disease or albuminuria) in type 1 diabetes	7,247 European ancestry cases, 12,053 European ancestry controls	NA	2q36.3	COL4A3	rs55703767-G	0.794	4E-10		1.2048193	[NR]	Illumina [up to 49000000] (imputed)	N
2325	chr2	228121100	228121101	rs55703767	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Diabetic nephropathy in type 1 diabetes	4,948 European ancestry cases, 12,076 European ancestry controls	NA	2q36.3	COL4A3	rs55703767-G	0.794	5E-12		1.2658228	[NR]	Illumina [up to 49000000] (imputed)	N
2325	chr2	228134154	228134155	rs4608502	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	2q36.3	COL4A3	rs4608502-T	0.35	1E-13		2.37	[1.74-3] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2325	chr2	228134154	228134155	rs4608502	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q36.3	LOC654841	rs4608502-T	0.3283	2E-15		0.114	[0.085-0.143] unit decrease	Affymetrix [~ 11900000] (imputed)	N
2325	chr2	228134154	228134155	rs4608502	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q36.3	COL4A3	rs4608502-C	0.33	2E-12		0.2486	[0.18-0.32] unit increase	Affymetrix [19941912] (imputed)	N
2325	chr2	228135179	228135180	rs7606754	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	2q36.3	COL4A3	rs7606754-A	0.345	6E-9		2.372	[1.57-3.17] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
2325	chr2	228135179	228135180	rs7606754	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	2q36.3	COL4A3	rs7606754-A	0.35	1E-9		0.07	[0.05-0.09] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
2325	chr2	228142226	228142227	rs200287952	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria (moderate to severe)	49,212 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q36.3	COL4A3	rs200287952-A	2.8E-4	8E-8		5.46	[2.94-10.16]	Illumina [32500000] (imputed)	N
2325	chr2	228142226	228142227	rs200287952	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Hematuria	68,051 Icelandic ancestry cases, 68,903 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	2q36.3	COL4A3	rs200287952-A	2.8E-4	5E-7		4.766	[2.59-8.78]	Illumina [32500000] (imputed)	N
2325	chr2	228143966	228143969	rs143937055	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2q36.3	COL4A3, LOC654841	rs143937055-?	NR	9E-13		0.1	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
2325	chr2	228162279	228162280	rs62279162	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	2q36.3		rs62279162-T	0.667486	6E-16		0.0757924	[0.057-0.095] increase	Affymetrix [11014269] (imputed)	N
2325	chr2	228162279	228162280	rs62279162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q36.3	NR	rs62279162-G	0.352427	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
2325	chr2	228162279	228162280	rs62279162	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q36.3	NR	rs62279162-G	0.336405	3E-12		0.013688	[0.0099-0.0175] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2325	chr2	228162279	228162280	rs62279162	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	2q36.3	COL4A3	rs62279162-?	NA	3E-22		2.38	[1.89-2.87] unit increase	Affymetrix [5541230] (imputed)	N
2325	chr2	228171325	228171326	rs12471801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q36.3		rs12471801-C	NR	4E-9		0.0102	[0.0069-0.0135] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2325	chr2	228179327	228179328	rs59257065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q36.3		rs59257065-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2326	chr2	228198772	228198773	rs6754433	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q36.3	MFF	rs6754433-A	0.6737	4E-12		0.1004	[0.071-0.13] unit increase	Affymetrix [~ 11900000] (imputed)	N
2326	chr2	228211469	228211470	rs10177414	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		2q36.3	MFF	rs10177414-C	NR	6E-8		0.018	[0.012-0.024] dioptres decrease	NR [5900115] (imputed)	N
2326	chr2	228211469	228211470	rs10177414	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	2q36.3	MFF	rs10177414-T	NR	1E-6		1.0615711	[1.04-1.09]	NR [5919636] (imputed)	N
2326	chr2	228240043	228240044	rs10178861	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	2q36.3	TM4SF20	rs10178861-G	0.404771429	9E-6		0.141686	[0.079-0.204] unit decrease	Illumina [6969139] (imputed)	N
2326	chr2	228276661	228276662	rs113577811	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q36.3		rs113577811-A	0.17	3E-9		5.96	z score increase	Affymetrix [9061022] (imputed)	N
2326	chr2	228276661	228276662	rs113577811	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q36.3	NR	rs113577811-A	0.1645	2E-9				NR [9056863] (imputed)	N
2326	chr2	228309909	228309909	rs34884906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q36.3	NR	rs34884906-I	0.64729	2E-10		0.013422	[0.0093-0.0176] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2326	chr2	228320191	228320192	rs4675190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q36.3	NR	rs4675190-T	0.590184	2E-10		0.012009	[0.0083-0.0157] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2327	chr2	228378860	228378861	rs10189795	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q36.3		rs10189795-C	0.45	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
2327	chr2	228378860	228378861	rs10189795	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.3	NR	rs10189795-C	0.4409	6E-9				NR [9056863] (imputed)	N
2327	chr2	228397565	228397566	rs6731443	23984888	Himes BE	2013-08-28	BMC Med Genet	ITGB5 and AGFG1 variants are associated with severity of airway responsiveness.	Airway hyperresponsiveness	994 European ancestry asthma cases	650 European ancestry asthma cases, 3,354 European ancestry chronic obstructive pulmonary disease cases	2q36.3	ITGB5, AGFG1	rs6731443-G	0.36	2E-6		0.022	[NR] unit decrease	Affymetrix [2154322] (imputed)	N
2327	chr2	228404166	228404167	rs13424689	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q36.3		rs13424689-C	0.39	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
2327	chr2	228421788	228421789	rs13400297	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	2q36.3	AGFG1	rs13400297-?	0.02138	3E-8		5.151	[4.51-5.79]	Affymetrix [547296]	N
2327	chr2	228434967	228434968	rs6741427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q36.3		rs6741427-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2328	chr2	228481418	228481419	rs11889798	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	2q36.3	C2orf83, LOC729968	rs11889798-A		4E-7	(EA)			Illumina [NR]	N
2328	chr2	228486713	228486714	rs57905270	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	2q36.3	C2orf83	rs57905270-?		5E-6				Illumina [5908215] (imputed)	N
2328	chr2	228509457	228509458	rs997363	24700089	Miura K	2014-04-04	J Med Virol	Genome-wide association study of HPV-associated cervical cancer in Japanese women.	Cervical cancer	226 Japanese ancestry cases, 186 Japanese ancestry controls	NA	2q36.3	intergenic	rs997363-C	0.4032	1E-6		1.986	[1.50-2.62]	Affymetrix [556045]	N
2328	chr2	228510335	228510336	rs75293382	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (fetal genotype effect)	2,145 Central Asian ancestry cases, 2,027 Central Asian ancestry controls, 4,630 European ancestry cases, 373,345 European ancestry controls	452 Kazakh ancestry cases, 361 Kazakh ancestry controls, 580 European ancestry cases, 760 European ancestry controls	2q36.3		rs75293382-C	0.06	1E-6		1.3	[1.18-1.45]	Illumina [12130433] (imputed)	N
2328	chr2	228511925	228511926	rs34823645	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary albumin-to-creatinine ratio	218,759 European ancestry individuals	109,530 European ancestry individuals	2q36.3	C2orf83	rs34823645-C	7.0E-4	3E-18		0.53	[0.41-0.65] unit increase	Affymetrix [19420026] (imputed)	N
2328	chr2	228511925	228511926	rs34823645	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	2q36.3	NR	rs34823645-C	7.0E-4	1E-16		1.5151	[1.15-1.88] unit increase	Affymetrix [19420026] (imputed)	N
2328	chr2	228519517	228519518	rs56006724	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	2q36.3	C2orf83	rs56006724-A	NR	6E-10	(Unclassified Acidaminococcaceae)	0.88	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
2328	chr2	228583278	228583279	rs5028741	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.3		rs5028741-?	NR	5E-8				NR [NR]	N
2328	chr2	228583278	228583279	rs5028741	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q36.3		rs5028741-?	NR	5E-8				NR [NR]	N
2328	chr2	228583278	228583279	rs5028741	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q36.3	NR	rs5028741-T	0.479	6E-6		0.015476286	[0.0088-0.0222] unit increase	Affymetrix [up to 6544775] (imputed)	N
2328	chr2	228584897	228584898	rs11691652	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q36.3	SLC19A3	rs11691652-C	0.189	8E-6	(Cortisol )	0.03	[NR] ng/mL increase	Illumina [899892]	N
2329	chr2	228654078	228654079	rs4973334	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 20 levels	21,758 European ancestry individuals	9,173 individuals	2q36.3		rs4973334-T	0.38	4E-19		0.0878	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2329	chr2	228660111	228660112	rs7556897	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q36.3	AC073065.3	rs7556897-?	NR	8E-12	(subset analysis)			Illumina [130052]	N
2329	chr2	228660111	228660112	rs7556897	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q36.3	CCL20	rs7556897-A	0.66	3E-8	(EA)	1.0756639		Affymetrix, Illumina [~ 9000000] (imputed)	N
2329	chr2	228660111	228660112	rs7556897	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q36.3	CCL20	rs7556897-A	0.66	2E-10	(EA)	1.0683979		Affymetrix, Illumina [~ 9000000] (imputed)	N
2329	chr2	228660111	228660112	rs7556897	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q36.3	CCL20	rs7556897-A	0.66	6E-6	(EA)	1.0588406	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2329	chr2	228660361	228660362	rs4973341	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	2q36.3	RNA5SP121, SNRPGP8, LOC100533842, CCL20	rs4973341-T		2E-10		1.2195122	[1.11-1.35]	Illumina [1143634] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	2q36.3	SLC19A3, CCL20	rs10187276-T	0.256	5E-13		0.034	[0.024-0.044] unit decrease	NR [NR] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2q36.3	SLC19A3, CCL20	rs10187276-T	0.256	5E-13		0.034	[0.024-0.044] unit decrease	NR [7647814] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	2q36.3	NR	rs10187276-T	0.251	2E-8		0.865	[0.56-1.17] unit decrease	Affymetrix [10894596] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q36.3	SLC19A3, CCL20	rs10187276-T	0.25	7E-11		1.078	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q36.3	SLC19A3, CCL20	rs10187276-?	NR	2E-19		1.079	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
2329	chr2	228670436	228670437	rs10187276	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q36.3	SLC19A3, CCL20	rs10187276-T	NR	3E-7		1.041	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
2329	chr2	228670475	228670476	rs1811711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q36.3	NR	rs1811711-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2329	chr2	228670475	228670476	rs1811711	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	2q36.3	intergenic	rs1811711-C	0.826	6E-9		1.14	[1.10-1.18]	Illumina [9578670] (imputed)	N
2329	chr2	228670475	228670476	rs1811711	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q36.3	Intergenic	rs1811711-?		2E-7				Illumina [9725440] (imputed)	N
2329	chr2	228670574	228670575	rs10175070	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	2q36.3	CCL20, SLC18A3	rs10175070-G	0.251	4E-12		1.122	[1.086-1.160]	Affymetrix [10894596] (imputed)	N
2329	chr2	228670574	228670575	rs10175070	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	2q36.3	CCL20, SPHKAP	rs10175070-A	0.75	2E-6		0.124	[0.073-0.175] unit increase	Illumina [6150213] (imputed)	N
2329	chr2	228704720	228704721	rs7423358	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	2q36.3	CCL20, DAW1	rs7423358-C	0.758113153052676	2E-8		0.0430394	[0.028-0.058] unit increase	Affymetrix [35186738] (imputed)	N
2329	chr2	228704720	228704721	rs7423358	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q36.3	CCL20	rs7423358-C	0.75	1E-14				NR [> 9500000] (imputed)	N
2329	chr2	228704720	228704721	rs7423358	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q36.3	CCL20	rs7423358-C	0.752847	2E-12		1.0501442	[1.0359018013349-1.0645823781235]	NR [9572556] (imputed)	N
2329	chr2	228704720	228704721	rs7423358	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	2q36.3	CCL20, DAW1, SLC19A3, SPHKAP, C2orf83, AGFG1	rs7423358-C	0.75812	1E-9		1.04605	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
2329	chr2	228707861	228707862	rs13384448	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q36.3	CCL20, DAW1	rs13384448-T	0.76	3E-12		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
2329	chr2	228715374	228715375	rs7591163	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	2q36.3	CCL20, WDR69	rs7591163-?	NR	3E-7	(DBPLTA)			Affymetrix [70897]	N
2330	chr2	228722007	228722008	rs11685995	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q36.3	NR	rs11685995-C	0.758	2E-10		1.0415581	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
2330	chr2	228724138	228724139	rs2396497	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q36.3	NR	rs2396497-C	0.7581	1E-9		1.0430791	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
2330	chr2	228724725	228724726	rs940341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q36.3		rs940341-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2330	chr2	228739134	228739135	rs6738964	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	2q36.3	SPHKAP, DAW1	rs6738964-T	0.7618	2E-10		1.0416667	[1.03-1.05]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
2330	chr2	228755350	228755351	rs16824134	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.3	NR	rs16824134-?	NR	1E-16				Affymetrix [NR]	N
2330	chr2	228766206	228766207	rs60026510	31206164	Richards AL	2019-06-17	Schizophr Bull (Bp)	The Relationship Between Polygenic Risk Scores and Cognition in Schizophrenia.	Cognitive ability in schizophrenia	3,034 European ancestry individuals	NA	2q36.3	NR	rs60026510-?	NR	2E-6		0.1974	[0.12-0.28] unit increase	Illumina [NR] (imputed)	N
2330	chr2	228799471	228799472	rs867918410	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.3	NR	rs867918410-A	0.01045	3E-9	(HBD)	6.36	NR unit increase	Illumina [1671387] (imputed)	N
2331	chr2	228911160	228911161	rs35077431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q36.3		rs35077431-A	NR	3E-8		0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2331	chr2	228919966	228919967	rs62201071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs62201071-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
2331	chr2	228966272	228966273	rs72973801	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio	677 European ancestry individuals	NA	2q36.3		rs72973801-C	0.9125	5E-6		0.074	[0.043-0.105] unit decrease	Illumina [7778465] (imputed)	N
2331	chr2	228968308	228968309	rs12471307	33223526	Hong S	2020-11-22	Transl Psychiatry	Genome-wide association study of Alzheimer's disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset.	Central cerebrospinal fluid amyloid beta 42 to 40 ratio (abnormal vs normal)	418 European ancestry cases, 259 European ancestry controls	NA	2q36.3		rs12471307-A	0.2361	4E-6		0.494	[0.3667-0.6654]	Illumina [7778465] (imputed)	N
2331	chr2	228971883	228971884	rs13415288	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q36.3	NR	rs13415288-C	0.3654	9E-11		0.0262	[0.018-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2331	chr2	228973382	228973383	rs67714256	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	2q36.3	NR	rs67714256-C	0.346	8E-8		0.00744434	[0.0047-0.0102] unit decrease	NR [~ 9732723] (imputed)	N
2331	chr2	228973659	228973660	rs7561798	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q36.3	NR	rs7561798-G	0.4852	1E-9		0.0281	[0.019-0.037] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2331	chr2	228973659	228973660	rs7561798	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	2q36.3	SPHKAP	rs7561798-G	0.482171024837791	3E-8		0.04	[0.026-0.054] unit increase	NR [5035015] (imputed)	N
2332	chr2	228984643	228984644	rs67890737	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q36.3	SPHKAP	rs67890737-?	NR	4E-8		0.0116704665	[0.0075-0.0158] unit increase	NR [7306098]	N
2332	chr2	228985504	228985505	rs4500930	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q36.3	NR	rs4500930-T	0.342	6E-11		0.017080382	[0.012-0.022] unit increase	Affymetrix [10549349] (imputed)	N
2332	chr2	228985504	228985505	rs4500930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q36.3		rs4500930-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2332	chr2	228985504	228985505	rs4500930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q36.3		rs4500930-?	NR	1E-17				NR [~ 8900000] (imputed)	N
2332	chr2	228985504	228985505	rs4500930	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs4500930-T	0.3449	2E-13		0.0109	[0.008-0.0138] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2332	chr2	228994781	228994782	rs7577463	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q36.3	NR	rs7577463-G	NR	5E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2332	chr2	228996202	228996202	rs200882902	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q36.3		rs200882902-CT	0.33	2E-10				NR [NR] (imputed)	N
2332	chr2	228996202	228996202	rs200882902	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q36.3		rs200882902-CT	0.33	1E-17		0.013	% increase	NR [NR] (imputed)	N
2332	chr2	228998025	228998026	rs151252883	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q36.3	SPHKAP	rs151252883-T	0.657996	2E-10		0.00921571	[0.0064-0.012] unit decrease	Affymetrix [12370749]	N
2332	chr2	228999690	228999691	rs6436755	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q36.3	NA	rs6436755-A	0.4316	3E-13		0.0119	[0.0088-0.015] unit increase	NR [~ 27400000] (imputed)	N
2332	chr2	229002619	229002620	rs4973618	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q36.3	NA	rs4973618-A	0.6623	1E-16		0.0148	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
2332	chr2	229010959	229010960	rs4605363	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs4605363-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
2332	chr2	229014718	229014719	rs4438470	27143689	Hertz DL	2016-05-03	Clin Cancer Res	Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism that Increases Risk of Docetaxel-Induced Neuropathy.	Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer	50 European ancestry cases with neuropathy, 573 European ancestry cases without neuropathy	NA	2q36.3	SPHKAP	rs4438470-?	NR	5E-6		2.71	[1.73-4.25]	Illumina [498081]	N
2332	chr2	229021718	229021719	rs12466485	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q36.3	NR	rs12466485-A	0.789196	2E-9		0.0150776	[0.01-0.02] unit decrease	NR [NR]	N
2332	chr2	229039004	229039005	rs28613487	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs28613487-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
2332	chr2	229061867	229061868	rs74747621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs74747621-T	0.1124	6E-12		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2332	chr2	229061867	229061868	rs74747621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.3	Intergenic	rs74747621-T	0.1124	2E-12	(MTAG)	0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2332	chr2	229071613	229071614	rs10204933	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	2q36.3	SPHKAP	rs10204933-G	NR	4E-10		1.3	[1.213-1.386]	Illumina [6627481] (imputed)	N
2333	chr2	229121949	229121950	rs867319	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q36.3	Intergenic	rs867319-C	0.8711	4E-8	(MTAG)	0.0135	[0.0086-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2333	chr2	229131285	229131286	rs35924503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	IgA nephropathy	15,587 European ancestry cases, 462,197 European ancestry controls, 71 East Asian ancestry cases, 175,288 East Asian ancestry controls	NA	2q36.3		rs35924503-C	NR	8E-12		1.4222	[1.01-1.83] unit increase	Affymetrix, Illumina [25844273] (imputed)	N
2333	chr2	229131285	229131286	rs35924503	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	2q36.3	SPHKAP	rs35924503-C	0.001	9E-21	(EA)	0.295	[0.23-0.36] unit increase	NR [12082474] (imputed)	N
2333	chr2	229131285	229131286	rs35924503	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion (no hypertensive medication)	302,687 European ancestry individuals without hypertensive medication	NA	2q36.3	SPHKAP, PID1	rs35924503-C	0.001	1E-10		0.17391	[0.12-0.23] unit increase	Affymetrix [11709857] (imputed)	N
2333	chr2	229131285	229131286	rs35924503	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	2q36.3	SPHKAP, PID1	rs35924503-C	0.001	9E-23		0.24742	[0.2-0.3] unit increase	Affymetrix [11709857] (imputed)	N
2333	chr2	229160199	229160200	rs35311980	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Albuminuria	217,634 European ancestry individuals	108,800 European ancestry individuals	2q36.3	NR	rs35311980-T	8.0E-4	5E-16		1.2784	[0.97-1.59] unit increase	Affymetrix [19420026] (imputed)	N
2333	chr2	229168388	229168389	rs2091513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs2091513-T	0.8399	2E-11	(conditional-joint)	0.0129	[0.0092-0.0166] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2333	chr2	229189859	229189860	rs12467175	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q36.3		rs12467175-T	0.4923	7E-9		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2333	chr2	229189859	229189860	rs12467175	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q36.3	Intergenic	rs12467175-T	0.4923	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2334	chr2	229269824	229269825	rs1469181	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	2q36.3	NR	rs1469181-?		7E-6				Affymetrix [702413]	N
2334	chr2	229272783	229272784	rs978212	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	2q36.3		rs978212-?	NR	5E-8		0.018	NR unit decrease	NR [4425810] (imputed)	N
2334	chr2	229283210	229283211	rs2194545	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q36.3	LOC646794	rs2194545-G	NR	9E-7	(EA)	1.054741	[1.03-1.08]	Illumina [6627481] (imputed)	N
2334	chr2	229283210	229283211	rs2194545	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q36.3	LOC646794	rs2194545-G	NR	3E-6		1.0471205	[1.03-1.07]	Illumina [6627481] (imputed)	N
2334	chr2	229283210	229283211	rs2194545	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q36.3	intergenic	rs2194545-G	NR	2E-6		1.048218	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2334	chr2	229297831	229297832	rs7598908	26312577	Tan LJ	2015-08-27	J Clin Endocrinol Metab	Bivariate Genome-Wide Association Study Implicates ATP6V1G1 as a Novel Pleiotropic Locus Underlying Osteoporosis and Age at Menarche.	Bone mineral density (hip) and age at menarche	826 Han Chinese ancestry females	1,728 European ancestry females, 709 African American females, 408 Hispanic/Latin American females	2q36.3	intergenic	rs7598908-?		1E-6	(East Asian)			Affymetrix [702413]	N
2334	chr2	229320092	229320093	rs7601312	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7601312-?	NR	5E-8				NR [2625067]	N
2334	chr2	229320092	229320093	rs7601312	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs7601312-G	NR	4E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2334	chr2	229323602	229323603	rs12694782	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q36.3	intergenic	rs12694782-C	0.51846549391069	5E-6	(F_Rhodospirillaceae_RNT)	0.160306	[0.092-0.229] unit increase	Illumina [7711310] (imputed)	N
2334	chr2	229353388	229353389	rs189985091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q36.3	Intergenic	rs189985091-G	0.996	2E-6	(AA)	0.137	unit increase	Illumina [NR] (imputed)	N
2335	chr2	229403877	229403878	rs16825105	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q36.3	NR	rs16825105-?	NR	7E-8				Affymetrix [NR]	N
2335	chr2	229499706	229499707	rs7563279	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	2q36.3	NR	rs7563279-G	NR	7E-7				Affymetrix [at least 811691] (imputed)	N
2335	chr2	229502196	229502197	rs62201738	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q36.3	PID1	rs62201738-A	0.9218	3E-12		0.0325	[0.023-0.042] unit decrease	Affymetrix [19819130] (imputed)	N
2335	chr2	229502196	229502197	rs62201738	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q36.3	PID1	rs62201738-A	0.9218	9E-63		0.0743	[0.066-0.083] unit decrease	Affymetrix [19819130] (imputed)	N
2335	chr2	229502196	229502197	rs62201738	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q36.3	PID1	rs62201738-A	0.9218	1E-6		0.0212	[0.013-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
2335	chr2	229502196	229502197	rs62201738	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q36.3		rs62201738-?	NR	8E-91				NR [~ 8900000] (imputed)	N
2335	chr2	229502502	229502503	rs10498230	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	2q36.3	PID1	rs10498230-T	0.0793	9E-12		0.083	[0.059-0.107] unit increase	Affymetrix [27624732] (imputed)	N
2336	chr2	229510928	229510929	rs1435867	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2q36.3	PID1	rs1435867-?	NR	2E-9	(FEV1/FVC, Ever-smoking)			NR [~ 2500000] (imputed)	N
2336	chr2	229563309	229563310	rs62202380	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	2q36.3	AC074019.1	rs62202380-C	0.05	6E-6		1.8	[1.02-2.58] g/day increase	Affymetrix [10353649] (imputed)	N
2336	chr2	229569918	229569919	rs16825267	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q36.3	PID1	rs16825267-C	0.92	2E-20		1.19	[1.15-1.24]	Affymetrix, Illumina [6224355] (imputed)	N
2336	chr2	229569918	229569919	rs16825267	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	2q36.3	PID1	rs16825267-C	0.93	2E-9		1.19	[1.12,1.25]	Affymetrix, Illumina [NR] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	1E-6		0.86	[0.8-0.91]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	2E-13			[NR]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	4E-10		0.86	[0.83-0.9]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	7E-14			[NR]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	5E-10		0.86	[0.83-0.9]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	2E-6		0.86	[0.81-0.91]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	3E-9		0.84	[0.8-0.89]	Affymetrix [9886854] (imputed)	N
2336	chr2	229590716	229590717	rs4973115	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	2q36.3	NR	rs4973115-A	0.08	2E-6		0.78	[0.7-0.86]	Affymetrix [9886854] (imputed)	N
2336	chr2	229592303	229592304	rs3732192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q36.3		rs3732192-C	NR	6E-9		0.073	[0.048-0.098] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
2336	chr2	229614419	229614420	rs10206244	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q36.3		rs10206244-A	0.47	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
2336	chr2	229614419	229614420	rs10206244	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q36.3	NR	rs10206244-A	0.4881	5E-11				NR [9056863] (imputed)	N
2337	chr2	229642421	229642422	rs11679180	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	2q36.3	intergenic	rs11679180-?	NR	3E-6	(European, All type I)			Illumina [873935]	N
2337	chr2	229726205	229726206	rs12996281	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q36.3	NR	rs12996281-?	NR	1E-6	(Japanese)	0.5723	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2338	chr2	229826500	229826501	rs568420197	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q36.3	NR	rs568420197-?	NR	6E-6		0.007558	[0.0043-0.0108] unit decrease	Affymetrix [805426] (imputed)	N
2338	chr2	229877098	229877099	rs17578959	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	2q36.3	PID1	rs17578959-?		6E-6				Illumina [7405822] (imputed)	N
2339	chr2	229911069	229911069	rs199501612	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	2q36.3		rs199501612-TGTGA	NR	3E-6		0.4072	[0.24-0.58] unit decrease	Illumina [NR] (imputed)	N
2339	chr2	229940634	229940635	rs1860762	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	2q36.3	NR	rs1860762-?		5E-6		78.5	[40.32-116.68] unit decrease	Illumina [498648]	N
2339	chr2	229941643	229941644	rs56192920	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q36.3	NR	rs56192920-G	0.3546	3E-10				NR [9056863] (imputed)	N
2339	chr2	229942969	229942970	rs2191835	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q36.3		rs2191835-T	0.34	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
2339	chr2	229963576	229963577	rs10179193	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		PID1	rs10179193-C	0.09	8E-6		0.12	[0.061-0.179] unit decrease	Illumina [3700000] (imputed)	N
2339	chr2	229969797	229969798	rs6436839	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	2q36.3	PID1	rs6436839-?	0.29	3E-6	(quetiapine)			Affymetrix [492900]	N
2339	chr2	229977723	229977724	rs149934046	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	2q36.3		rs149934046-A	NR	2E-6		6.206	[3.72-8.69] unit decrease	Illumina [NR] (imputed)	N
2339	chr2	229977914	229977915	rs2536217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	2q36.3		rs2536217-T	NR	5E-8		0.1049	[0.067-0.143] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2339	chr2	229980420	229980421	rs11886495	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	2q36.3	PID1	rs11886495-G	0.290581	2E-8		0.120742485	[0.079-0.163] unit increase	Affymetrix [7288503] (imputed)	N
2339	chr2	230000573	230000574	rs12329005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q36.3	PID1	rs12329005-C	NR	3E-8		0.0174409	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
2339	chr2	230006858	230006859	rs2023499	31668963	Bay CP	2019-09-27	J Clin Densitom	Genome-Wide Association Analysis of Longitudinal Bone Mineral Content Data From the Iowa Bone Development Study.	Peak hip bone mineral content	190 women, 174 men	NA	2q36.3	NR	rs2023499-C	0.17	2E-6	(Male)	6.31	[3.92-8.7] g increase	Illumina [509842]	N
2339	chr2	230007118	230007119	rs13411207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q36.3		rs13411207-A	NR	3E-9		0.0521	[0.035-0.069] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
2339	chr2	230007145	230007146	rs62190384	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	2q36.3	PID1	rs62190384-?	NR	1E-8		0.056508	[0.037-0.076] unit decrease	Illumina [19707525] (imputed)	N
2339	chr2	230009316	230009317	rs7566501	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q36.3	PID1	rs7566501-?	NR	2E-12		0.0346516	[0.025-0.044] unit decrease	Illumina [4804024] (imputed)	N
2339	chr2	230012075	230012076	rs11691714	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	2q36.3		rs11691714-A	NR	4E-8		0.0457	[0.029-0.062] unit decrease	Affymetrix, Illumina [20456336] (imputed)	N
2339	chr2	230019347	230019348	rs985891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q36.3		rs985891-A	NR	3E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2339	chr2	230020219	230020220	rs6738438	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q36.3	PID1	rs6738438-C	0.636427	1E-8		0.0113203	[0.0074-0.0152] unit increase	Affymetrix [NR] (imputed)	N
2340	chr2	230039816	230039817	rs13013873	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUSK	5,366 Icelandic ancestry individuals	NA	2q36.3		rs13013873-A	0.3967	2E-12		0.137474	[0.099-0.176] unit increase	Illumina [7506463] (imputed)	N
2340	chr2	230100790	230100791	rs1226988	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q36.3	NR	rs1226988-T	NR	3E-12		0.022	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2340	chr2	230128203	230128204	rs7596814	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q36.3	PID1	rs7596814-G	0.706794	7E-9		0.0126299	[0.0083-0.0169] unit increase	Affymetrix [NR] (imputed)	N
2341	chr2	230209036	230209037	rs7563766	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	2q36.3	NR	rs7563766-?		1E-6	(genus_Acinetobacter)	0.617846	[0.38-0.85] unit increase	Affymetrix [211319]	N
2341	chr2	230211823	230211824	rs111883254	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	2q36.3		rs111883254-C	NR	2E-8		0.2606	[0.17-0.35] unit increase	Affymetrix, Illumina [25844227] (imputed)	N
2341	chr2	230219313	230219314	rs7581955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q36.3		rs7581955-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2341	chr2	230224030	230224031	rs7594321	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2q36.3	DNER	rs7594321-T	0.35	5E-11	(FEV1/FVC, Pack-years)	2.0E-4	[0.00005-0.00035] unit decrease	NR [~ 2500000] (imputed)	N
2341	chr2	230224030	230224031	rs7594321	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2q36.3	DNER	rs7594321-T	0.35	3E-9	(FEV1/FVC, Ever-smoking)	0.015	[-0.01048-0.04048] unit decrease	NR [~ 2500000] (imputed)	N
2341	chr2	230264690	230264691	rs6733289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q36.3		rs6733289-?	NR	6E-24				NR [~ 8900000] (imputed)	N
2341	chr2	230278964	230278965	rs2396662	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q36.3		rs2396662-T	0.82926	3E-6		0.042136	[0.024-0.06] unit increase	Affymetrix [15580782] (imputed)	N
2341	chr2	230282623	230282624	rs6760224	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	2q36.3		rs6760224-A	0.82584	2E-6		0.042011	[0.025-0.059] unit increase	Affymetrix [15580782] (imputed)	N
2342	chr2	230307820	230307821	rs111868934	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q36.3	NR	rs111868934-T	0.02091	9E-10	(ACSM2B)	1.326	NR unit increase	Illumina [1671387] (imputed)	N
2342	chr2	230309359	230309360	rs35032874	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q36.3	DNER	rs35032874-T	0.74109375	2E-8	(DNER, 9769_48_3)	0.16194683	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
2342	chr2	230349988	230349989	rs11890081	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	2q36.3	NR	rs11890081-C	0.0172129438807299	8E-6	(IGP47)	0.6811	[0.38-0.98] unit increase	Illumina [~ 2500000] (imputed)	N
2342	chr2	230366541	230366542	rs6736713	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	2q36.3	NR	rs6736713-?	NR	2E-8			[NR]	NR [1665663]	N
2342	chr2	230372347	230372348	rs62192052	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (ER positive or PR positive, and HER2 negative treated with chemotherapy)	10,394 European ancestry individuals	NA	2q36.3		rs62192052-?	NR	3E-9		0.15	[0.08-0.28]	NR [10000000] (imputed)	N
2342	chr2	230377921	230377922	rs12694816	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	2q36.3	NR	rs12694816-T	0.1363	7E-7		2.0005	[1.21-2.79] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2342	chr2	230419056	230419057	rs11694957	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA	2q36.3	DNER	rs11694957-T	0.33	2E-6				Illumina [1679420] (imputed)	N
2342	chr2	230419056	230419057	rs11694957	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in APOEe4 non-carrier Alzheimer's disease	287 European ancestry individuals	NA	2q36.3	DNER	rs11694957-T	0.33	6E-6		0.18	[0.10-0.26] unit increase	Illumina [1679420] (imputed)	N
2343	chr2	230447247	230447247	rs201611644	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNER	rs201611644-?	NR	2E-12		2.12269	[NR] unit increase	Affymetrix [NR] (imputed)	N
2343	chr2	230447247	230447247	rs201611644	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNER	rs201611644-?	NR	2E-11	(male)	1.90387	[NR] unit increase	Affymetrix [NR] (imputed)	N
2343	chr2	230522397	230522398	rs1861612	24101674	Hanson RL	2013-10-07	Diabetes	A genome-wide association study in American Indians implicates DNER as a susceptibility locus for type 2 diabetes.	Type 2 diabetes	278 American Indian ancestry young-onset cases, 129 American Indian ancestry cases, 424 American Indian ancestry controls from 514 sibships	1,273 American Indian ancestry cases, 1,635 American Indian ancestry controls, 793 cases, 3,133 controls	2q36.3	DNER	rs1861612-T	0.64	7E-8		1.29	[NR]	Affymetrix [453654]	N
2343	chr2	230545656	230545657	rs7558924	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs7558924-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
2344	chr2	230587447	230587448	rs12465362	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	2q36.3	DNER, TRIP12	rs12465362-G	NR	8E-6		4.475	NR z score increase	Illumina [7839440] (imputed)	N
2344	chr2	230592776	230592777	rs34661502	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNER	5,368 Icelandic ancestry individuals	NA	2q36.3		rs34661502-G	0.3438	2E-14		0.154104	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2344	chr2	230602876	230602877	rs11886634	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q36.3	TRIP12	rs11886634-?	NR	5E-6	(TAG 58:12)	0.17757265	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
2344	chr2	230612450	230612451	rs6756038	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	2q36.3	TRIP12	rs6756038-G	0.7353	5E-9		5.857	NR z score decrease	Illumina [26237160] (imputed)	N
2344	chr2	230619993	230619994	rs7580600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q36.3		rs7580600-A	NR	7E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
2344	chr2	230623126	230623127	rs7571826	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	2q36.3	DNER	rs7571826-T	0.3275	4E-13		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
2344	chr2	230624928	230624929	rs62190394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs62190394-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
2344	chr2	230624928	230624929	rs62190394	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	2q36.3	NR	rs62190394-T	0.3144	2E-16		0.021935415	[0.017-0.027] unit increase	Affymetrix [10549349] (imputed)	N
2344	chr2	230624928	230624929	rs62190394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q36.3		rs62190394-?	NR	7E-17				NR [~ 8900000] (imputed)	N
2344	chr2	230625383	230625384	rs73099222	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q36.3	NR	rs73099222-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
2344	chr2	230629137	230629138	rs1044822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q36.3		rs1044822-T	NR	4E-8		0.0155	[0.01-0.021] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2344	chr2	230629137	230629138	rs1044822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q36.3		rs1044822-T	NR	1E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
2344	chr2	230629137	230629138	rs1044822	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q36.3	TRIP12	rs1044822-T	0.1465	6E-11		0.2275	[0.16-0.3] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2344	chr2	230629137	230629138	rs1044822	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q36.3	DNER	rs1044822-?	NR	8E-6	(malate)	0.22136217	[0.12-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2344	chr2	230633572	230633572	rs3215750	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	2q36.3		rs3215750-TAAATC	0.33	1E-12				NR [NR] (imputed)	N
2344	chr2	230633572	230633572	rs3215750	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	2q36.3		rs3215750-TAAATC	0.33	2E-19		0.014	% increase	NR [NR] (imputed)	N
2344	chr2	230636080	230636081	rs116220382	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	2q36.3	TRIP12	rs116220382-A	0.0128	6E-6		0.1532	[0.087-0.219] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2344	chr2	230663575	230663576	rs6720868	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q36.3	NA	rs6720868-T	0.3083	2E-17		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
2344	chr2	230663575	230663576	rs6720868	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q36.3	NA	rs6720868-T	0.3083	2E-17		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
2344	chr2	230665302	230665303	rs7592697	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q36.3	TRIP12	rs7592697-T	0.6707	5E-8		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2344	chr2	230665302	230665303	rs7592697	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	2q36.3	TRIP12	rs7592697-T	0.6508	3E-7		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2344	chr2	230684103	230684104	rs517261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q36.3		rs517261-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2345	chr2	230705516	230705517	rs34481385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q36.3		rs34481385-T	NR	6E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2345	chr2	230705516	230705517	rs34481385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q36.3		rs34481385-T	NR	4E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2345	chr2	230739208	230739209	rs17324331	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q36.3	NA	rs17324331-C	0.3136	2E-10		0.012	[0.0083-0.0157] unit increase	NR [~ 27400000] (imputed)	N
2345	chr2	230816702	230816703	rs2433733	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q36.3	FBXO36	rs2433733-G	0.322314	7E-13		0.010504	[0.0076-0.0134] unit increase	Affymetrix [12370749]	N
2346	chr2	230822857	230822858	rs17325374	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q36.3	TRIP12	rs17325374-?	NR	8E-6	(TAG 58:12)	0.15773848	[0.089-0.227] unit increase	Affymetrix [at least 2500000] (imputed)	N
2346	chr2	230826791	230826792	rs34869673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q36.3		rs34869673-T	NR	7E-11		0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2347	chr2	230995446	230995447	rs6436908	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsessive compulsive disorder severity	376 Spanish ancestry individuals	NA	2q37.1	LOC107985997	rs6436908-?	NR	8E-6		1.754016	NR unit decrease	Illumina [338357]	N
2347	chr2	231026591	231026592	rs6727879	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Subcutaneous adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	2q37.1	SP110	rs6727879-A	0.99	2E-7	(women)	645.32	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
2347	chr2	231035728	231035729	rs13010998	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.1	NR	rs13010998-C	NR	1E-10		0.0243	[0.017-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2347	chr2	231035744	231035745	rs13010639	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.1	SP110	rs13010639-A	0.085	6E-6	(BMR RQ)	0.04	[NR] unit increase	Illumina [899892]	N
2347	chr2	231044211	231044212	rs967006	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	2q37.1	NR	rs967006-?	NR	2E-6		0.044805	[0.026-0.063] unit increase	Affymetrix [9658292] (imputed)	N
2347	chr2	231044254	231044255	rs2396718	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2q37.1	NR	rs2396718-C	0.094	2E-7		1.27	[1.16-1.38]	Affymetrix, Illumina [~ 8500000] (imputed)	N
2347	chr2	231076624	231076625	rs3769839	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Cholangiocarcinoma in primary sclerosing cholangitis (time to event)	188 European ancestry cholangiocarcinoma cases, 3,147 European ancestry cholangiocarcinoma-free cases	NA	2q37.1	FBXO36, SLC16A14, SP110, SP140, SP140L, SP100	rs3769839-G	NR	1E-6				Illumina [130422]	N
2348	chr2	231082123	231082124	rs13389060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.1	NR	rs13389060-T	NR	5E-9		0.0222	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
2348	chr2	231091222	231091223	rs13397985	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	2q37.1		rs13397985-?	NR	2E-6		1.33875	[1.22-1.46]	NR [663083]	N
2348	chr2	231091222	231091223	rs13397985	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	2q37.1	SP140, SP110	rs13397985-G	0.19	5E-13		1.43	[NR]	Illumina [450000] (imputed)	N
2348	chr2	231091222	231091223	rs13397985	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q37.1	SP140	rs13397985-G	0.18	1E-22		1.45	[NR]	Illumina [549934]	N
2348	chr2	231091222	231091223	rs13397985	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q37.1	NR	rs13397985-?	0.81	2E-7		1.39	[1.23-1.59]	Affymetrix, Illumina [~ 1500000] (imputed)	N
2348	chr2	231091222	231091223	rs13397985	18758461	Di Bernardo MC	2008-08-31	Nat Genet	A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	505 European ancestry cases, 1,438 European ancestry controls	1,024 European ancestry cases, 1,677 European ancestry controls	2q37.1	SP140, SP110	rs13397985-G	0.19	6E-10		1.41	[1.26-1.57]	Illumina [345665]	N
2348	chr2	231097128	231097129	rs6716753	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q37.1	SP110, SP140	rs6716753-?		6E-6				Illumina [9725440] (imputed)	N
2348	chr2	231097128	231097129	rs6716753	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q37.1	SP110, SP140	rs6716753-?		1E-13				Illumina [9560910] (imputed)	N
2348	chr2	231097128	231097129	rs6716753	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.1	NR	rs6716753-G	0.1896	1E-10	(EA)	1.0847341	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2348	chr2	231097128	231097129	rs6716753	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q37.1	SP140	rs6716753-C	0.196	1E-16		1.134	[1.089-1.18]	Affymetrix, Illumina [1230000] (imputed)	N
2348	chr2	231106723	231106724	rs10201872	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	2q37.1	SP140	rs10201872-A	NR	2E-10		1.14	[1.12-1.16]	Illumina [465434]	N
2348	chr2	231110581	231110582	rs28445040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q37.1		rs28445040-T	NR	4E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2348	chr2	231115453	231115454	rs9989735	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.1	NR	rs9989735-?	NR	2E-18	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2348	chr2	231115453	231115454	rs9989735	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	2q37.1	SP140	rs9989735-C	0.19	4E-23		1.16		Illumina [161311]	N
2348	chr2	231116873	231116874	rs7423615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.1	SP140	rs7423615-T	0.187425	2E-19		0.025407571	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2348	chr2	231116873	231116874	rs7423615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs7423615-T	0.183704	1E-21				Affymetrix, Illumina [19872809] (imputed)	N
2348	chr2	231116873	231116874	rs7423615	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2q37.1	SP140	rs7423615-T	0.187	3E-13		1.12	[1.07-1.18]	Affymetrix, Illumina [953241] (imputed)	N
2348	chr2	231121828	231121829	rs35540610	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	2q37.1	SP140	rs35540610-C	NR	3E-33		1.1423	NR	Affymetrix, Illumina [8278136] (imputed)	N
2348	chr2	231122056	231122057	rs13023767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.1	SP140	rs13023767-G	0.252699	7E-18		0.021813378	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2348	chr2	231122056	231122057	rs13023767	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q37.1	NR	rs13023767-G	0.252108	3E-21		0.021503	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2348	chr2	231122056	231122057	rs13023767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q37.1	SP140	rs13023767-G	0.2524	2E-9		0.02469971	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2348	chr2	231122056	231122057	rs13023767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q37.1	SP140	rs13023767-G	0.2524	1E-11		0.02780079	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2348	chr2	231122056	231122057	rs13023767	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q37.1	SP140	rs13023767-G	0.2524	3E-11		0.02727584	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
2348	chr2	231122089	231122093	rs35643768	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q37.1	SP140	rs35643768-C	0.2523	1E-10		0.02628287	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
2348	chr2	231126637	231126638	rs58989813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q37.1	SP140	rs58989813-T	0.160881	1E-11		0.02026538	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2348	chr2	231128522	231128523	rs7557737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q37.1	SP140	rs7557737-T	0.16089	3E-10		0.018916849	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2348	chr2	231130299	231130300	rs73104283	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to calcium-channel-Active anticonvulsants in focal epilepsy	214 European ancestry cases, 410 European ancestry controls	NA			rs73104283-?	NR	4E-6				Illumina [NR] (imputed)	N
2348	chr2	231130299	231130300	rs73104283	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to calcium-channel-Active anticonvulsants in epilepsy	690 European ancestry cases, 848 European ancestry controls	NA			rs73104283-?	NR	1E-6				Illumina [NR] (imputed)	N
2348	chr2	231144578	231144585	rs149207840	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	2q37.1	SP110	rs149207840-TCCTCCTG	NR	1E-7				Illumina [10806625] (imputed)	N
2348	chr2	231148127	231148128	rs12694846	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q37.1	SP140	rs12694846-?	NR	5E-15	(subset analysis)			Illumina [130052]	N
2348	chr2	231154011	231154012	rs34004493	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	2q37.1	SP110, SP140	rs34004493-G	NR	4E-32		1.39	[1.31-1.47]	Affymetrix, Illumina [> 10000000] (imputed)	N
2348	chr2	231161025	231161026	rs35256947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.1		rs35256947-?	NR	8E-19				NR [~ 8900000] (imputed)	N
2348	chr2	231174304	231174305	rs11903152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q37.1		rs11903152-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2348	chr2	231177200	231177202	rs796650675	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q37.1	SP140	rs796650675-C	0.2711	1E-9		0.02441812	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
2348	chr2	231177903	231177904	rs933957	26051272	Fischer A	2015-09-15	Am J Respir Crit Care Med	Identification of Immune-Relevant Factors Conferring Sarcoidosis Genetic Risk.	Sarcoidosis	1,726 European ancestry cases, 5,482 European ancestry controls	1,912 European ancestry cases, 5,938 European ancestry controls, 781 African American cases, 876 African American controls	2q37.1	NR	rs933957-G	NR	7E-8	(EA)	1.18	[1.11-1.25]	Illumina [128705]	N
2348	chr2	231190246	231190247	rs1834748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.1	NR	rs1834748-C	NR	2E-12		0.0177	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2348	chr2	231190246	231190247	rs1834748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.1	NR	rs1834748-C	NR	1E-21		0.0241	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
2349	chr2	231227916	231227917	rs74269006	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs74269006-C	0.107588	7E-10				Affymetrix, Illumina [24332387] (imputed)	N
2349	chr2	231230083	231230084	rs74269007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q37.1		rs74269007-G	NR	2E-8		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2349	chr2	231230170	231230171	rs6712333	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Nicotine use	7,188 European ancestry individuals	NA	2q37.1	SP140L	rs6712333-A	0.119	5E-6		8.322	[NR] unit increase	Illumina [527829]	N
2349	chr2	231230704	231230705	rs2396746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q37.1		rs2396746-T	NR	6E-11		0.0167	[0.012-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2349	chr2	231231350	231231351	rs6710287	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	2q37.1		rs6710287-T	NR	5E-8		1.307	NR	Affymetrix [7846216] (imputed)	N
2349	chr2	231248260	231248261	rs28497362	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q37.1		rs28497362-T	0.1404	5E-8		0.17604701	[0.11-0.24] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
2349	chr2	231252478	231252479	rs4973321	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	2q37.1	NR	rs4973321-G	0.013128	6E-6		1.1325028	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
2349	chr2	231258149	231258150	rs7590429	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q37.1	SP140L	rs7590429-T	0.444032	7E-9		0.012930471	[0.0086-0.0173] unit increase	Affymetrix [93095623] (imputed)	N
2349	chr2	231270164	231270165	rs12694861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q37.1		rs12694861-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2349	chr2	231286502	231286503	rs11682084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q37.1	NR	rs11682084-C	0.714258	3E-13		0.00631632	[0.0045-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
2349	chr2	231286502	231286503	rs11682084	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q37.1	NR	rs11682084-C	0.714258	2E-11		0.00677018	[0.0048-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
2349	chr2	231287881	231287882	rs58941251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	2q37.1	NR	rs58941251-T	NR	3E-9		0.0241	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2349	chr2	231287881	231287882	rs58941251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.1	NR	rs58941251-T	NR	1E-11		0.0273	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
2349	chr2	231309216	231309217	rs17273810	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	2q37.1	SP100, SP140L, HMGB1P3, SP140	rs17273810-A	NR	8E-6	(sleep latency, weekdays)	0.3877	[0.22-0.56] unit decrease	Affymetrix [7141204] (imputed)	N
2349	chr2	231312376	231312377	rs141521978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.1	SP100	rs141521978-T	0.996	1E-6	(AA)	0.168	unit increase	Illumina [NR] (imputed)	N
2349	chr2	231312376	231312377	rs141521978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.1	SP100	rs141521978-T	0.996	2E-6	(AA)	0.831	NR unit increase	Illumina [NR] (imputed)	N
2349	chr2	231333485	231333486	rs184963741	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.1	SP100	rs184963741-C	0.997	6E-7	(AA)	0.173	unit increase	Illumina [NR] (imputed)	N
2349	chr2	231333485	231333486	rs184963741	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.1	SP100	rs184963741-C	0.997	2E-6	(AA)	0.836	NR unit increase	Illumina [NR] (imputed)	N
2349	chr2	231338155	231338156	rs150147150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q37.1	NR	rs150147150-G	0.99628	3E-10		0.100577	[0.069-0.132] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2350	chr2	231410519	231410520	rs6729378	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.1	NR	rs6729378-?		6E-6				Illumina [4322238] (imputed)	N
2350	chr2	231419305	231419306	rs11898768	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.6708..ubiquinol.8.biosynthesis..prokaryotic.)	7,738 European ancestry individuals	NA	2q37.1		rs11898768-A	0.882718144023489	2E-8		0.22250022	[0.14-0.3] unit increase	Illumina [5584686] (imputed)	N
2350	chr2	231420400	231420401	rs17275498	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	2q37.1	AC010149.4	rs17275498-?	NR	8E-6	(COWA)			Illumina [up to 563855]	N
2350	chr2	231438558	231438559	rs112324089	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.1	TPM3P8	rs112324089-?		7E-6				Illumina [4322238] (imputed)	N
2350	chr2	231442592	231442593	rs113214710	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	2q37.1	AC010149.4	rs113214710-T	0.07	5E-6		5.021	[2.87-7.17] unit decrease	Illumina [NR] (imputed)	N
2351	chr2	231526525	231526526	rs6750050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	2q37.1		rs6750050-C	0.624494	3E-10		0.014948025	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2351	chr2	231526525	231526526	rs6750050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	2q37.1		rs6750050-C	0.624475	1E-12		0.016848136	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr2	231526525	231526526	rs6750050	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q37.1		rs6750050-C	0.624476	3E-19		0.02121372	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2351	chr2	231526525	231526526	rs6750050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs6750050-C	0.62455	3E-20				Affymetrix, Illumina [23472807] (imputed)	N
2351	chr2	231526525	231526526	rs6750050	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q37.1	NR	rs6750050-C	0.621289	2E-22		0.020683	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q37.1		rs60237566-G	NR	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q37.1		rs60237566-G	NR	5E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q37.1	ITM2C	rs60237566-G	0.221402	7E-11		0.017633192	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q37.1	ITM2C	rs60237566-G	0.221409	1E-9		0.016580967	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q37.1	ITM2C	rs60237566-G	0.221345	7E-13		0.0177499	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q37.1	ITM2C	rs60237566-G	0.221371	2E-12		0.018795723	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs60237566-G	0.213252	4E-12				Affymetrix, Illumina [24246363] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q37.1	NR	rs60237566-G	0.221167	1E-12		0.015876	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs60237566-G	0.212854	7E-12				Affymetrix, Illumina [20825802] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q37.1	NR	rs60237566-G	0.221418	2E-12		0.016455	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q37.1		rs60237566-?	NR	3E-9				NR [~ 8900000] (imputed)	N
2353	chr2	231742710	231742711	rs60237566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q37.1		rs60237566-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2353	chr2	231745585	231745585	rs552821746	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q37.1		rs552821746-GA	0.02188	2E-8		0.4552	[0.3-0.61] unit decrease	Illumina [18189521] (imputed)	N
2353	chr2	231745585	231745585	rs552821746	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD28- CD25++ CD8+ T cell %T cell	3,162 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q37.1		rs552821746-GA	0.02166	1E-8		0.4686	[0.31-0.63] unit decrease	Illumina [18208347] (imputed)	N
2353	chr2	231804116	231804117	rs61021727	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2q37.1	NR	rs61021727-T	0.2975	4E-7		1.0359	[0.64-1.44] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
2353	chr2	231818805	231818806	rs9973676	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q37.1	GPR55	rs9973676-?	NR	6E-7		0.202	[0.1-0.3] unit decrease	Illumina [at least 13000000] (imputed)	N
2354	chr2	231883659	231883660	rs144699115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs144699115-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2354	chr2	231930681	231930682	rs7564129	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	2q37.1	NR	rs7564129-?		4E-8	(Hippocampus )			NR [8955960] (imputed)	N
2355	chr2	232013303	232013304	rs6437001	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q37.1	NR	rs6437001-?		5E-9	(Hippocampus )			NR [8955960] (imputed)	N
2355	chr2	232054513	232054514	rs7565313	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q37.1	NR	rs7565313-?		9E-9	(Hippocampus )			NR [8955960] (imputed)	N
2355	chr2	232054896	232054897	rs55748426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q37.1	NR	rs55748426-C	NR	2E-9		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
2355	chr2	232054896	232054897	rs55748426	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	2q37.1	NR	rs55748426-C	NR	5E-10		0.0181	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2355	chr2	232061966	232061967	rs6753393	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	2q37.1		rs6753393-C	NR	5E-11		1.05844		Affymetrix, Illumina [62056310] (imputed)	N
2355	chr2	232105419	232105420	rs77240236	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	2q37.1	NR	rs77240236-C	NR	5E-6		0.2551	[0.14-0.37] SD units decrease	NR [10700000] (imputed)	N
2355	chr2	232126289	232126290	rs9677476	24962563	Rubicz R	2014-07-01	Genet Epidemiol	Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens.	Food antigen IgG levels	1,367 Mexican Americans from 63 families	NA	2q37.1	ARMC9	rs9677476-G	0.274	1E-6	(BSA-a)	0.21	[NR] unit increase	Illumina [944565] (imputed)	N
2355	chr2	232126697	232126698	rs62197345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q37.1		rs62197345-A	NR	2E-8		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2356	chr2	232142258	232142258	rs4018034	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	2q37.1	NR	rs4018034-?		4E-8	(Hippocampus )			NR [8955960] (imputed)	N
2356	chr2	232159211	232159212	rs745962	24049095	Chen Z	2013-09-18	J Med Genet	Genome-wide association study of sex hormones, gonadotropins and sex hormone-binding protein in Chinese men.	Hormone measurements	1,999 Han Chinese ancestry individuals	1,496 East Asian ancestry individuals	2q37.1	NR	rs745962-T	0.18	7E-6	(Oestradiol)			Illumina [709211]	N
2356	chr2	232160553	232160554	rs12623587	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	2q37.1	C2orf72, PSMD1, HTR2B, ARMC9	rs12623587-A	0.29	6E-6		0.0321	NR unit decrease	NR [NR] (imputed)	N
2356	chr2	232176540	232176541	rs7580717	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	2q37.1	NR	rs7580717-G		5E-6		1.131	[NR]	Illumina [414804]	N
2356	chr2	232192304	232192305	rs1669070	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	2q37.1	HTR2B, NMUR1	rs1669070-T	0.4	4E-6	(EA-glucose response)	3.02	[1.73-4.31] mg/dL decrease	Affymetrix, Illumina [> 2000000] (imputed)	N
2356	chr2	232253389	232253390	rs2595508	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	B3GNT7	rs2595508-A	0.762285	5E-8	(332 ms)	0.0363095	[0.023-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2356	chr2	232253389	232253390	rs2595508	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	B3GNT7	rs2595508-A	0.762285	2E-8	(330 ms)	0.0373626	[0.024-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2356	chr2	232253389	232253390	rs2595508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q37.1	AC017104.6	rs2595508-G	0.232726	2E-10		0.016757907	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2356	chr2	232256863	232256864	rs2595507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q37.1	NR	rs2595507-C	0.233462	1E-10		0.014407	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2357	chr2	232268883	232268884	rs13002735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q37.1		rs13002735-C	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2357	chr2	232268883	232268884	rs13002735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs13002735-C	0.236593	3E-10				Affymetrix, Illumina [23467995] (imputed)	N
2357	chr2	232268883	232268884	rs13002735	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	2q37.1	B3GNT7	rs13002735-A	0.761828	5E-7		0.376831	[0.23-0.52] unit increase	Affymetrix [~ 7800000] (imputed)	N
2357	chr2	232268883	232268884	rs13002735	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	2q37.1	B3GNT7	rs13002735-C	0.24	1E-17		0.3305	[0.25-0.41] unit decrease	Affymetrix [19941912] (imputed)	N
2357	chr2	232271283	232271284	rs13030174	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	2q37.1	B3GNT7	rs13030174-A	0.733	1E-10		0.3	[0.20-0.40] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
2357	chr2	232272825	232272826	rs12993696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.1		rs12993696-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2357	chr2	232286551	232286552	rs4973392	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	intergenic	rs4973392-A	0.2268	2E-20		0.021	[0.016-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
2357	chr2	232290156	232290157	rs6721978	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on Natural Killer	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q37.1		rs6721978-C	0.34639	1E-15		0.2237	[0.17-0.28] unit increase	Illumina [18030777] (imputed)	N
2357	chr2	232290639	232290640	rs12614599	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on CD33- HLA DR-	1,635 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q37.1		rs12614599-A	0.34278	2E-12		0.2608	[0.19-0.33] unit increase	Illumina [16999305] (imputed)	N
2357	chr2	232291470	232291471	rs4973397	25387707	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of antisaccade eye tracking error rate: a genome-wide association study.	Anti-saccade response	4,469 European ancestry twins and their parents	NA	2q37.1	B3GNT7	rs4973397-?	NR	6E-8		0.031	[0.019-0.043] unit increase	Illumina [527829]	N
2357	chr2	232298075	232298076	rs12475512	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	2q37.1	PDE6D, PTMA, NCL	rs12475512-G	0.543	7E-7		0.108	[0.065-0.151] unit increase	Illumina [6150213] (imputed)	N
2357	chr2	232318753	232318754	rs16828074	23728934	Yang L	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	Polygenic transmission and complex neuro developmental network for attention deficit hyperactivity disorder: genome-wide association study of both common and rare variants.	Attention deficit hyperactivity disorder	1,040 Han Chinese ancestry cases, 963 Han Chinese ancestry controls	NA	2q37.1	NCL	rs16828074-?	NR	6E-9				Affymetrix [656051]	N
2357	chr2	232321955	232321956	rs7598759	26121033	Grondin Y	2015-06-29	PLoS One	Genetic Polymorphisms Associated with Hearing Threshold Shift in Subjects during First Encounter with Occupational Impulse Noise.	Hearing loss in noise exposure	19 European and Mexican ancestry cases, 22 European and Mexican ancestry controls	NA	2q37.1	NCL	rs7598759-?	NR	5E-7		12.75	[NR]	Affymetrix [289036]	N
2357	chr2	232324509	232324510	rs12620844	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q37.1	NR	rs12620844-T	0.569718	9E-11		0.0142082	[0.0099-0.0185] unit decrease	NR [NR]	N
2357	chr2	232325691	232325692	rs12996154	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	2q37.1	NCL	rs12996154-C	NR	6E-6		0.02793	[NR] unit increase	Illumina [1124301]	N
2357	chr2	232328680	232328681	rs10202701	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	NCL	rs10202701-T	0.5419	3E-33		0.0227	[0.019-0.026] unit increase	Affymetrix [18391927] (imputed)	N
2357	chr2	232328680	232328681	rs10202701	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs10202701-?	NR	1E-59				NR [~ 8900000] (imputed)	N
2357	chr2	232329558	232329559	rs6737291	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.1	NCL	rs6737291-?	NR	3E-15		0.027135396	[0.02-0.034] unit decrease	Illumina [27896057] (imputed)	N
2357	chr2	232343109	232343110	rs4972995	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q37.1	NCL	rs4972995-A	NR	5E-8		0.0175939	[0.011-0.024] unit increase	Affymetrix [321788] (imputed)	N
2357	chr2	232348664	232348665	rs10210351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.1		rs10210351-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2357	chr2	232353593	232353594	rs34120041	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	2q37.1		rs34120041-?	NR	1E-8				Affymetrix [NR] (imputed)	N
2357	chr2	232378230	232378231	rs6750795	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2q37.1	C2orf52	rs6750795-T	0.44	2E-8		1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2357	chr2	232379498	232379499	rs28578546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs28578546-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2358	chr2	232401892	232401893	rs12473604	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		2q37.1	NMUR1	rs12473604-G	0.775	2E-6		0.016	[0.01-0.022] dioptres decrease	NR [5901671] (imputed)	N
2358	chr2	232432297	232432298	rs4340504	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.1	NR	rs4340504-?	NR	4E-8				Affymetrix [NR]	N
2358	chr2	232457879	232457880	rs74460533	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TEX44	rs74460533-?	NR	1E-8	(male)	2.0317	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2358	chr2	232482167	232482168	rs4973453	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	2q37.1	NR	rs4973453-?	NR	4E-7		5.084	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
2358	chr2	232483517	232483518	rs13024268	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	2q37.1	NR	rs13024268-A	NR	7E-9		5.787	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
2359	chr2	232543042	232543043	rs13383053	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q37.1		rs13383053-A	NR	8E-9		0.0174	[0.012-0.023] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2359	chr2	232564461	232564462	rs188335145	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	2q37.1	NR	rs188335145-C		6E-7		0.7396	[0.45-1.03] SD units increase	NR [10700000] (imputed)	N
2359	chr2	232573943	232573944	rs1058315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q37.1		rs1058315-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q37.1	PTMA	rs58106596-A	0.221595	6E-19		0.023709714	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs58106596-A	0.211117	5E-25				Affymetrix, Illumina [24649327] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q37.1	NR	rs58106596-A	0.226697	2E-25		0.023602	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs58106596-A	0.217338	1E-27				Affymetrix, Illumina [23472807] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q37.1	NR	rs58106596-A	0.225881	4E-25		0.023998	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q37.1	PTMA	rs58106596-A	0.2227	3E-9		0.02582399	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2359	chr2	232579378	232579379	rs58106596	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	2q37.1	PTMA	rs58106596-A	0.2228	6E-13		0.03133607	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2359	chr2	232580484	232580485	rs75827217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q37.1		rs75827217-C	NR	3E-12		0.0233	[0.017-0.03] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2359	chr2	232580644	232580645	rs62197235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q37.1		rs62197235-C	NR	3E-8		0.016	[0.01-0.022] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2359	chr2	232581018	232581019	rs58117563	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q37.1	PTMA	rs58117563-A	0.225067	7E-12		0.018268714	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2359	chr2	232582084	232582085	rs55729107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q37.1	PTMA	rs55729107-G	0.223865	2E-18		0.023374336	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2359	chr2	232582084	232582085	rs55729107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q37.1	PTMA	rs55729107-G	0.223862	8E-12		0.01825525	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2359	chr2	232582084	232582085	rs55729107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs55729107-G	0.211419	3E-12				Affymetrix, Illumina [23114412] (imputed)	N
2359	chr2	232582084	232582085	rs55729107	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q37.1	NR	rs55729107-G	0.225567	8E-14		0.017505	[0.013-0.022] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2359	chr2	232584806	232584807	rs11695646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q37.1		rs11695646-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2359	chr2	232594092	232594093	rs55888370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q37.1		rs55888370-A	NR	5E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2359	chr2	232599796	232599797	rs143306427	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals, 1,420 European ancestry individuals	NA	2q37.1		rs143306427-A	0.17	7E-7		0.53	[0.31-0.75] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
2359	chr2	232632759	232632760	rs187368135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs187368135-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2360	chr2	232686378	232686379	rs9967659	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.1	NR	rs9967659-?	NR	9E-7				Affymetrix [NR]	N
2360	chr2	232697492	232697493	rs139989857	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q37.1		rs139989857-G	0.283824	3E-9		0.014932393	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2360	chr2	232697492	232697493	rs139989857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs139989857-G	0.246891	4E-10				Affymetrix, Illumina [24332387] (imputed)	N
2360	chr2	232697492	232697493	rs139989857	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q37.1	NR	rs139989857-G	0.285124	2E-10		0.014062	[0.0098-0.0184] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2360	chr2	232743802	232743803	rs6714205	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q37.1	NR	rs6714205-?	NR	2E-7	(AA)	0.3626	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2360	chr2	232744208	232744209	rs10179086	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	2q37.1	NA	rs10179086-T	0.7895	2E-8		0.0113	[0.0074-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
2360	chr2	232769212	232769213	rs79797223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs79797223-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2360	chr2	232775254	232775255	rs2580855	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	2q37.1	intergenic	rs2580855-C	0.0578	7E-6		1.24807	NR	Affymetrix, Illumina [30341632] (imputed)	N
2360	chr2	232775490	232775491	rs191712157	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q37.1	NR	rs191712157-?	NR	7E-6		1.14969	[0.65-1.65] unit decrease	NR [13958389] (imputed)	N
2360	chr2	232779124	232779125	rs2580854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	NPPC	rs2580854-G	NR	8E-9		0.0193358	[0.013-0.026] unit decrease	Affymetrix [323123] (imputed)	N
2360	chr2	232781183	232781184	rs73000823	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	intergenic	rs73000823-T	0.1563	2E-15		0.0205	[0.015-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
2361	chr2	232790052	232790053	rs5268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.1	NPPC	rs5268-C	NR	6E-10		0.0181255	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
2361	chr2	232790052	232790053	rs5268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	NPPC	rs5268-C	NR	5E-8		0.0174601	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2361	chr2	232790052	232790053	rs5268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs5268-?	NR	4E-55				NR [~ 8900000] (imputed)	N
2361	chr2	232790490	232790491	rs11900720	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs11900720-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2361	chr2	232796609	232796610	rs749052	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q37.1	NPPC	rs749052-T	0.938	2E-26		0.067	[0.055-0.079] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2361	chr2	232796609	232796610	rs749052	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	2q37.1	DIS3L2, NPPC, COPS7B, PDE6D, PTMA	rs749052-A	0.94	1E-6		8.7	[5.17-12.23] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
2361	chr2	232797860	232797861	rs2679178	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.1	NPPC	rs2679178-T	NR	3E-8		0.0280035	[0.018-0.038] unit decrease	Affymetrix [321016] (imputed)	N
2361	chr2	232797965	232797966	rs2580816	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q37.1	NPPC	rs2580816-T	0.19	6E-22		0.045	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
2361	chr2	232802377	232802378	rs2580819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	NPPC	rs2580819-A	NR	4E-13		0.0407451	[0.03-0.052] unit decrease	Affymetrix [321114] (imputed)	N
2361	chr2	232802377	232802378	rs2580819	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	NPPC	rs2580819-A	NR	3E-10		0.0351392	[0.024-0.046] unit decrease	Affymetrix [323123] (imputed)	N
2361	chr2	232802863	232802864	rs2580820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.1		rs2580820-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2361	chr2	232803546	232803547	rs192586223	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	2q37.1	NR	rs192586223-C		5E-6		0.6977	[0.4-0.99] SD units increase	NR [10700000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9172	3E-10	(women)	0.0633	[0.044-0.083] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9172	3E-10		0.0418	[0.029-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9172	1E-10	(men)	0.0634	[0.044-0.083] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9196	2E-8	(women)	0.064	[0.042-0.086] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9172	5E-9		0.0453	[0.03-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q37.1	NPPC	rs2580821-C	0.9169	1E-9	(men)	0.0688	[0.047-0.091] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-?	0.9172	6E-11	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-?	0.9172	4E-10	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804154	232804155	rs2580821	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	NPPC	rs2580821-?	0.9172	2E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232804521	232804522	rs10185460	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs10185460-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
2361	chr2	232804521	232804522	rs10185460	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.1	NR	rs10185460-T	0.328309	4E-11		0.0214139	[0.015-0.028] unit decrease	NR [19129689] (imputed)	N
2361	chr2	232811617	232811618	rs16828537	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	2q37.1		rs16828537-A	NR	6E-17	(East Asian)			Affymetrix [NR] (imputed)	N
2361	chr2	232811617	232811618	rs16828537	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist circumference adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	2q37.1		rs16828537-A	NR	4E-19	(East Asian)			Affymetrix [NR] (imputed)	N
2361	chr2	232815340	232815341	rs10460436	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs10460436-?	NR	2E-7		0.04296316	[0.027-0.059] unit decrease	Illumina [34656550] (imputed)	N
2361	chr2	232815340	232815341	rs10460436	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q37.1	NPPC	rs10460436-A	0.51	8E-39		0.062	[0.05-0.074] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
2361	chr2	232825145	232825146	rs143944819	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	2q37.1		rs143944819-A	0.77	8E-9		0.033	[0.025-0.041] L increase	Affymetrix [NR] (imputed)	N
2361	chr2	232860076	232860077	rs3116162	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs3116162-A	0.9133	1E-8	(EA)	0.0446	[0.029-0.06] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232860076	232860077	rs3116162	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs3116162-A	0.9133	1E-6	(EA, men)	0.0592	[0.035-0.083] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232860076	232860077	rs3116162	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q37.1	DIS3L2	rs3116162-A	0.9133	9E-7	(EA)	0.0434	[0.026-0.061] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232860076	232860077	rs3116162	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs3116162-?	0.9133	7E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232860076	232860077	rs3116162	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs3116162-?	0.9133	1E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2361	chr2	232860322	232860323	rs73995038	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	2q37.1		rs73995038-A	NR	4E-16	(East Asian)			Affymetrix [NR] (imputed)	N
2361	chr2	232860322	232860323	rs73995038	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and body mass index	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	2q37.1		rs73995038-A	NR	1E-15	(East Asian)			Affymetrix [NR] (imputed)	N
2361	chr2	232880123	232880124	rs143178398	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs143178398-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2361	chr2	232884267	232884268	rs11301026	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q37.1	DIS3L2	rs11301026-CT	0.0266	3E-6		0.1349	[0.079-0.191] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2361	chr2	232902073	232902074	rs3100609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs3100609-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
2361	chr2	232907291	232907292	rs3100612	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q37.1		rs3100612-?	NR	6E-8				NR [~ 8900000] (imputed)	N
2362	chr2	232917898	232917899	rs1453867	30261039	Suri P	2018-09-27	PLoS Genet	Genome-wide meta-analysis of 158,000 individuals of European ancestry identifies three loci associated with chronic back pain.	Chronic back pain	29,531 European ancestry cases, 128,494 European ancestry controls	50,915 British ancestry cases, 232,837 British ancestry controls	2q37.1	DIS3L2	rs1453867-C	0.35	4E-7		1.0309278	[1.02-1.04]	Affymetrix, Illumina [up to 9775703] (imputed)	N
2362	chr2	232928699	232928700	rs76803230	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	2q37.1	DIS3L2	rs76803230-?	NR	2E-9		0.42	[0.28-0.56] unit decrease	Affymetrix [5682219] (imputed)	N
2362	chr2	232965540	232965541	rs3100589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs3100589-A	NR	9E-11		0.0207326	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
2362	chr2	232982256	232982257	rs11677466	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q37.1	DIS3L2	rs11677466-A	0.914	3E-23		0.064	[0.05-0.078] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2362	chr2	232988581	232988582	rs3103267	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs3103267-?	NR	4E-8		0.03451001	[0.022-0.047] unit increase	Illumina [34656550] (imputed)	N
2362	chr2	232988581	232988582	rs3103267	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	2q37.1	DIS3L2	rs3103267-C	0.72	3E-8		1.16	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2362	chr2	232989830	232989831	rs3116168	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs3116168-?	NR	3E-8		0.0348402	[0.022-0.047] unit increase	Illumina [34656550] (imputed)	N
2362	chr2	232989830	232989831	rs3116168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs3116168-?	NR	7E-104				NR [~ 8900000] (imputed)	N
2362	chr2	232998805	232998806	rs182852047	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	2q37.1	NR	rs182852047-G		6E-6		0.6941	[0.4-0.99] SD units decrease	NR [10700000] (imputed)	N
2362	chr2	233034734	233034735	rs143965725	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs143965725-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2363	chr2	233046181	233046182	rs1249260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q37.1		rs1249260-T	0.557673	1E-70		0.0360058	[0.032-0.04] unit decrease	Illumina [13479295] (imputed)	N
2363	chr2	233046181	233046182	rs1249260	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.1	DIS3L2	rs1249260-?	NR	1E-82		0.05526645	[0.05-0.061] unit decrease	Illumina [27896057] (imputed)	N
2363	chr2	233053895	233053895	rs75664912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q37.1		rs75664912-TA	NR	7E-92		0.0392	[0.035-0.043] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2363	chr2	233053960	233053961	rs6728302	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs6728302-?	NR	1E-7		0.04094203	[0.026-0.056] unit decrease	Illumina [34656550] (imputed)	N
2363	chr2	233053960	233053961	rs6728302	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	2q37.1	DIS3L2	rs6728302-A	0.48	8E-44		0.064	[0.052-0.076] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
2363	chr2	233074204	233074205	rs3116201	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	DIS3L2	rs3116201-A	0.0977	3E-21		0.0299	[0.024-0.036] unit decrease	Affymetrix [18391927] (imputed)	N
2363	chr2	233075080	233075081	rs17272089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs17272089-T	NR	1E-10		0.0611458	[0.043-0.08] unit decrease	Affymetrix [321114] (imputed)	N
2363	chr2	233075080	233075081	rs17272089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs17272089-T	NR	3E-12		0.0656026	[0.047-0.084] unit decrease	Affymetrix [323123] (imputed)	N
2363	chr2	233077063	233077064	rs7571816	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs7571816-?	NR	2E-8		0.04344977	[0.028-0.058] unit decrease	Illumina [34656550] (imputed)	N
2363	chr2	233077063	233077064	rs7571816	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	2q37.1	DIS3L2	rs7571816-A	0.45	9E-9		0.06	[0.04-0.08] cm increase	Illumina [420885]	N
2363	chr2	233081801	233081802	rs3116212	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs3116212-C	NR	1E-8		0.0250317	[0.016-0.034] unit decrease	Affymetrix [321114] (imputed)	N
2363	chr2	233087482	233087483	rs2343240	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs2343240-?	NR	2E-7		0.04885489	[0.031-0.067] unit decrease	Illumina [34656550] (imputed)	N
2363	chr2	233090337	233090338	rs7574893	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q37.1	DIS3L2	rs7574893-T	0.8889	5E-8		0.0611	[0.039-0.083] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2363	chr2	233093314	233093315	rs12466581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.1	DIS3L2	rs12466581-G	NR	3E-9		0.0618098	[0.041-0.082] unit decrease	Affymetrix [321016] (imputed)	N
2363	chr2	233093732	233093733	rs79057767	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	DIS3L2	rs79057767-A	0.9677	3E-21		0.0498	[0.039-0.06] unit decrease	Affymetrix [18391927] (imputed)	N
2363	chr2	233094364	233094365	rs6437055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs6437055-C	NR	7E-15		0.0241198	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	2q37.1	DIS3L2	rs78198962-T	NR	4E-12		0.0555642	[0.04-0.071] unit increase	Affymetrix [321114] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs78198962-T	NR	9E-14		0.0651728	[0.048-0.082] unit increase	Affymetrix [321114] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.1	DIS3L2	rs78198962-T	NR	1E-11		0.0537265	[0.038-0.069] unit increase	Affymetrix [321016] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs78198962-T	NR	6E-11		0.056778	[0.04-0.074] unit increase	Affymetrix [323123] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs78198962-?	NR	6E-28				Affymetrix [~ 8270000] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q37.1	NR	rs78198962-?	NR	5E-7	(male)	0.49942	[0.31-0.69] unit increase	Affymetrix [7794483] (imputed)	N
2363	chr2	233094867	233094868	rs78198962	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	2q37.1	NR	rs78198962-?	NR	5E-10		0.39134	[0.27-0.51] unit increase	Affymetrix [7794483] (imputed)	N
2363	chr2	233113175	233113175	rs76750832	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	DIS3L2	rs76750832-CAGAT	0.911	2E-17		0.0274	[0.021-0.034] unit decrease	Affymetrix [18391927] (imputed)	N
2363	chr2	233115157	233115158	rs2101435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs2101435-G	NR	2E-11		0.0231049	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
2363	chr2	233138792	233138793	rs75877458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs75877458-?	NR	7E-78				NR [~ 8900000] (imputed)	N
2363	chr2	233155109	233155110	rs6717918	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	2q37.1	NR	rs6717918-?	NR	8E-7		0.02983931	[0.018-0.042] unit decrease	Illumina [34656550] (imputed)	N
2363	chr2	233155109	233155110	rs6717918	19570815	Estrada K	2009-07-01	Hum Mol Genet	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	2q37.1	DIS3L2, ALPP, NPPC	rs6717918-T	0.78	3E-9		0.44	[0.20-0.68] cm increase	Affymetrix, Illumina, Perlegen [2228850] (imputed)	N
2363	chr2	233161817	233161818	rs4973517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs4973517-C	NR	4E-12		0.0237833	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
2363	chr2	233161817	233161818	rs4973517	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.1	DIS3L2	rs4973517-T	0.7408	2E-7	(EA,men)	0.0345	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2363	chr2	233161817	233161818	rs4973517	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.1	DIS3L2	rs4973517-T	0.7408	2E-10	(EA)	0.0289	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2363	chr2	233166600	233166601	rs77244045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs77244045-T	NR	8E-12		0.0335694	[0.024-0.043] unit decrease	Affymetrix [321114] (imputed)	N
2363	chr2	233173933	233173933	rs112541683	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs112541683-AC	NR	5E-9		0.0249034	[0.017-0.033] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233181156	233181157	rs116341888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs116341888-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2364	chr2	233183966	233183967	rs67163108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q37.1		rs67163108-G	NR	5E-14		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2364	chr2	233183966	233183967	rs67163108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q37.1		rs67163108-G	0.519065	4E-10		0.0169305	[0.012-0.022] unit decrease	Illumina [13479924] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs6437061-C	NR	9E-9		0.0179749	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs6437061-A	0.5973	9E-6	(EA)	0.0178	[0.01-0.0256] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs6437061-A	0.5973	2E-9	(EA, men)	0.0357	[0.024-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	2q37.1	DIS3L2	rs6437061-A	0.6002	2E-7	(EA, men)	0.0342	[0.021-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	2q37.1	DIS3L2	rs6437061-?	0.5973	1E-9	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q37.1	DIS3L2	rs6437061-A	0.57	4E-6	(men)	0.0279	[0.016-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q37.1	DIS3L2	rs6437061-A	0.57	3E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q37.1	DIS3L2	rs6437061-A	0.57	1E-6	(men)	0.0257	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.1	DIS3L2	rs6437061-A	0.6023	2E-8	(EA, men)	0.0273	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2364	chr2	233185051	233185052	rs6437061	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.1	DIS3L2	rs6437061-A	0.6023	2E-6	(EA)	0.0166	[0.0097-0.0235] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2364	chr2	233189183	233189184	rs7595985	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	DIS3L2	rs7595985-C	NR	2E-11		0.0242941	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233199483	233199484	rs149870557	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs149870557-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
2364	chr2	233211160	233211161	rs111551994	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q37.1	DIS3L2	rs111551994-T	0.0842	2E-12		0.0885	[0.064-0.113] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2364	chr2	233214677	233214678	rs883434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	ECEL1P3	rs883434-C	NR	8E-9		0.0176762	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2364	chr2	233215402	233215403	rs883013	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	intergenic	rs883013-T	0.1854	6E-8		0.3644	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233215459	233215460	rs4996188	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	intergenic	rs4996188-A	0.1851	7E-8		0.3631	[0.23-0.49] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233217558	233217559	rs55738617	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	NR	rs55738617-T	0.1812	9E-8		0.3646	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233218261	233218262	rs6729965	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	NR	rs6729965-C	0.183	9E-8		0.3641	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233218261	233218262	rs6729965	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	2q37.1	ECEL1P3	rs6729965-T	0.8304	1E-7		0.0476	[0.03-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2364	chr2	233218491	233218492	rs6715083	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	ECEL1P3	rs6715083-T	NR	5E-8		0.0220815	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233218491	233218492	rs6715083	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	intergenic	rs6715083-T	0.1824	8E-8		0.3649	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233218573	233218574	rs6715387	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	NR	rs6715387-A	0.1829	9E-8		0.3641	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233218588	233218589	rs6715187	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	NR	rs6715187-G	0.1826	8E-8		0.3644	[0.23-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233220253	233220254	rs28845026	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	2q37.1	intergenic	rs28845026-T	0.1987	5E-8		0.3673	[0.24-0.5] unit increase	Illumina [~ 600000] (imputed)	N
2364	chr2	233225824	233225825	rs369218808	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	ECEL1P3	rs369218808-T	NR	5E-8		0.0186311	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233226862	233226863	rs77376609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	ECEL1P3	rs77376609-G	NR	2E-10		0.0340841	[0.024-0.045] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233226862	233226863	rs77376609	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	ECEL1P3	rs77376609-G	NR	2E-9		0.0322752	[0.022-0.043] unit decrease	Affymetrix [323123] (imputed)	N
2364	chr2	233227473	233227474	rs4589746	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs4589746-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
2364	chr2	233233499	233233500	rs58994136	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,361 Icelandic ancestry individuals	NA	2q37.1		rs58994136-T	0.08363	8E-25		0.339495	[0.27-0.4] unit decrease	Illumina [7506463] (imputed)	N
2364	chr2	233249079	233249080	rs10933394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,366 Icelandic ancestry individuals	NA	2q37.1		rs10933394-C	0.3572	2E-19		0.177332	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
2364	chr2	233249079	233249080	rs10933394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,365 Icelandic ancestry individuals	NA	2q37.1		rs10933394-C	0.3572	4E-18		0.167857	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
2364	chr2	233249079	233249080	rs10933394	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,361 Icelandic ancestry individuals	NA	2q37.1		rs10933394-C	0.3572	3E-59		0.306016	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
2364	chr2	233249079	233249080	rs10933394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs10933394-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
2364	chr2	233249079	233249080	rs10933394	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q37.1	ALPPL2	rs10933394-T	0.64203125	1E-13	(ALPPL2, 6706_18_3)	0.19216661	[0.14-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
2364	chr2	233255051	233255052	rs13386140	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,361 Icelandic ancestry individuals	NA	2q37.1		rs13386140-C	0.222	1E-36		0.28159	[0.24-0.33] unit decrease	Illumina [7506463] (imputed)	N
2364	chr2	233261350	233261350	rs35122030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	ECEL1P2	rs35122030-AG	NR	2E-14		0.0533923	[0.04-0.067] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233261350	233261350	rs35122030	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.1	ECEL1P2	rs35122030-AG	NR	3E-9		0.0411271	[0.028-0.055] unit decrease	Affymetrix [323123] (imputed)	N
2364	chr2	233271225	233271226	rs58457058	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,361 Icelandic ancestry individuals	NA	2q37.1		rs58457058-A	0.05702	6E-19		0.35138	[0.27-0.43] unit decrease	Illumina [7506463] (imputed)	N
2364	chr2	233273901	233273902	rs567230735	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	2q37.1	ALPPL2	rs567230735-G	NR	1E-10		0.0577457	[0.04-0.075] unit decrease	Affymetrix [321114] (imputed)	N
2364	chr2	233274508	233274509	rs1048995	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,366 Icelandic ancestry individuals	NA	2q37.1		rs1048995-G	0.05711	2E-6		0.194027	[0.11-0.27] unit decrease	Illumina [7506463] (imputed)	N
2364	chr2	233274508	233274509	rs1048995	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPPL2	5,365 Icelandic ancestry individuals	NA	2q37.1		rs1048995-G	0.05711	2E-7		0.208216	[0.13-0.29] unit decrease	Illumina [7506463] (imputed)	N
2364	chr2	233285138	233285139	rs72495198	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q37.1	NR	rs72495198-?	NR	2E-8				Illumina [7760689] (imputed)	N
2364	chr2	233285871	233285872	rs878481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs878481-?	NR	8E-14				NR [~ 8900000] (imputed)	N
2364	chr2	233286653	233286654	rs12478529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q37.1	ALPP	rs12478529-C	0.77796875	2E-35	(ALPP, 7813_6_3)	0.35366526	[0.3-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
2364	chr2	233291094	233291095	rs2853387	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q37.1	NR	rs2853387-A		2E-19		0.18	[0.14-0.22] unit increase	NR [NR]	N
2364	chr2	233304351	233304352	rs35458538	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q37.1	ALPPL2	rs35458538-G	0.78140625	2E-10	(ALPPL2, 6715_63_3)	0.1852092	[0.13-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
2365	chr2	233320438	233320439	rs192578261	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2q37.1	ALPI	rs192578261-T	0.0113	2E-6	(Subset)	1.212	[0.71-1.71] unit decrease	Illumina [up to 38043574] (imputed)	N
2365	chr2	233320438	233320439	rs192578261	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	2q37.1	ALPI	rs192578261-T	0.01	7E-7		1.2478	[0.76-1.74] unit decrease	Illumina [up to 38043574] (imputed)	N
2365	chr2	233320772	233320773	rs146144613	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2q37.1		rs146144613-A	0.008269463	1E-10		0.5847914	[0.41-0.76] unit increase	Illumina [13429980] (imputed)	N
2365	chr2	233349587	233349588	rs1529874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.1	NR	rs1529874-G	0.02613	4E-9	(MYO1B)	0.09803	NR unit increase	Illumina [1671387] (imputed)	N
2365	chr2	233360050	233360051	rs1190463	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q37.1	NR	rs1190463-A		2E-11		0.1	[0.08-0.12] unit increase	NR [NR]	N
2365	chr2	233360506	233360507	rs2697806	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.1	NR	rs2697806-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2365	chr2	233366739	233366740	rs1190460	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	2q37.1	NR	rs1190460-C	NR	6E-6		6260.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
2365	chr2	233368341	233368342	rs754902	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	2q37.1	NR	rs754902-C	NR	7E-6		0.0949	[0.054-0.136] unit decrease	Illumina [11133794] (imputed)	N
2365	chr2	233375311	233375312	rs1190458	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q37.1	NR	rs1190458-C		2E-8		0.26	[0.16-0.36] unit increase	NR [NR]	N
2365	chr2	233379932	233379933	rs2853443	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q37.1	NR	rs2853443-A	0.202	8E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
2365	chr2	233379940	233379941	rs1656404	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	2q37.1	PRSS56	rs1656404-A	0.21	8E-11		0.153	[0.11-0.20] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
2365	chr2	233385024	233385025	rs2573210	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	2q37.1	PRSS56	rs2573210-G	0.193	4E-16		1.304012	[1.217811-1.396314]	Affymetrix [NR] (imputed)	N
2365	chr2	233385024	233385025	rs2573210	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q37.1	NR	rs2573210-A	0.8082	2E-14	(EA)	0.1507	[0.11-0.19] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
2365	chr2	233385024	233385025	rs2573210	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent	41,073 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q37.1	NR	rs2573210-A	0.7982	9E-16		0.1463	[0.11-0.18] unit increase	Affymetrix, Illumina [~ 9300000] (imputed)	N
2365	chr2	233385024	233385025	rs2573210	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	2q37.1	CHRNG-ALPPL2	rs2573210-A	0.38	3E-10	(European ancestry)			Affymetrix, Illumina [up to 7331415] (imputed)	N
2365	chr2	233385024	233385025	rs2573210	27020472	Fan Q	2016-03-29	Nat Commun	Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error.	Spherical equivalent (joint analysis main effects and education interaction)	2,604 Erasmus Rucphen population isolate individuals, 456 Sardinian population isolate individuals, 36,976 European ancestry individuals, 5,971 East Asian ancestry individuals, 2,256 Malay ancestry individuals, 2,088 Indian ancestry individuals	NA	2q37.1	CHRNG-ALPPL2	rs2573210-A	0.33	3E-10				Affymetrix, Illumina [up to 7331415] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	2q37.1		rs1550094-A	0.69281	6E-6		0.033403	[0.019-0.048] unit increase	Affymetrix [15580782] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q37.1	PRSS56	rs1550094-?	NR	3E-11		0.148541	[0.1-0.19] unit increase	NR [13958389] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q37.1	PRSS56	rs1550094-?	NR	1E-15		0.226793	[0.17-0.28] unit increase	NR [13958389] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q37.1	NR	rs1550094-A		2E-61		0.19	[0.17-0.21] unit increase	NR [NR]	N
2365	chr2	233385395	233385396	rs1550094	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q37.1	B3GNT7, NPPC, DIS3L2, ALPP, ALPPL2, ALPI, ECEL1, PRSS56, CHRND, CHRNG, TIGD1, EIF4E2, EFHD1	rs1550094-?		1E-123				Affymetrix, Illumina [NR] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	2q37.1	PRSS56	rs1550094-A	0.69	5E-13		0.01	unit increase	Affymetrix [8928767] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q37.1	PRSS56	rs1550094-A	0.7005	4E-37		12.738	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q37.1	NR	rs1550094-A	0.6934	6E-30		0.0861	[0.071-0.101] unit increase	Illumina [~ 10600000] (imputed)	N
2365	chr2	233385395	233385396	rs1550094	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	2q37.1	PRSS56	rs1550094-?	NR	9E-35		1.102	[1.085-1.119]	Illumina [13762925] (imputed)	N
2365	chr2	233387006	233387007	rs2741297	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	2q37.1	NR	rs2741297-?	NR	3E-9		0.116523	[0.078-0.155] unit decrease	NR [13958389] (imputed)	N
2365	chr2	233390936	233390937	rs2245601	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	2q37.1		rs2245601-A	NR	1E-6		0.0211	[0.013-0.03] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
2365	chr2	233390936	233390937	rs2245601	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	2q37.1		rs2245601-A	NR	1E-7		0.0119	[0.0078-0.016] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
2365	chr2	233390936	233390937	rs2245601	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	2q37.1		rs2245601-A	0.52	1E-48		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
2365	chr2	233390936	233390937	rs2245601	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	2q37.1		rs2245601-A	0.49	5E-9		0.014	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
2365	chr2	233405826	233405827	rs146859528	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	2q37.1	NR	rs146859528-T		3E-9		0.25	[0.17-0.33] unit increase	NR [NR]	N
2365	chr2	233406997	233406998	rs1881492	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	2q37.1	PRSS56, CHRNG	rs1881492-T	0.22	5E-11		0.139	[0.098-0.18] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
2365	chr2	233417551	233417552	rs1190452	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q37.1	NR	rs1190452-A	0.702409	5E-11		0.013786	[0.0097-0.0179] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2365	chr2	233426525	233426526	rs1656402	21079520	Sato Y	2010-11-12	J Thorac Oncol	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	2q37.1	EIF4E2	rs1656402-?	NR	8E-8		2.38	[1.49-3.85] (AG)	Illumina [109365]	N
2366	chr2	233440923	233440924	rs7571154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs7571154-T	0.299261	5E-13				Affymetrix, Illumina [24588908] (imputed)	N
2366	chr2	233440923	233440924	rs7571154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q37.1	NR	rs7571154-T	0.292177	4E-14		0.015516	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2366	chr2	233441701	233441702	rs74453786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.1		rs74453786-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2366	chr2	233442090	233442091	rs13393800	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q37.1	EIF4E2	rs13393800-A	0.295	1E-17		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2366	chr2	233451162	233451163	rs2276559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs2276559-?	NR	2E-32				NR [~ 8900000] (imputed)	N
2366	chr2	233462094	233462095	rs10206657	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.1	Intergenic	rs10206657-A	0.2449	9E-9	(MTAG)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2366	chr2	233481977	233481978	rs13423701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13423701-C	NR	2E-14		0.0226	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
2366	chr2	233481977	233481978	rs13423701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.1	NR	rs13423701-C	NR	4E-13		0.0214	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
2366	chr2	233481977	233481978	rs13423701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	2q37.1	NR	rs13423701-C	NR	8E-15		0.0229	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
2366	chr2	233481977	233481978	rs13423701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	2q37.1	NR	rs13423701-C	NR	8E-17		0.0245	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2366	chr2	233490536	233490537	rs62191634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62191634-T	NR	6E-11		0.0416	[0.029-0.054] unit increase	Affymetrix [9000000] (imputed)	N
2366	chr2	233503988	233503989	rs10165093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	2q37.1	EFHD1	rs10165093-?	NR	6E-9		0.02542	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
2366	chr2	233509850	233509851	rs11689178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q37.1		rs11689178-C	NR	3E-49		0.0286	[0.025-0.032] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2366	chr2	233513174	233513175	rs2140773	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	2q37.1	EFHD1, LOC100129166	rs2140773-A	0.61	1E-9		2.9	[2.30-3.50] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
2366	chr2	233515246	233515247	rs4973549	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	2q37.1	EFHD1	rs4973549-?	NR	4E-17		0.0025	[0.0019-0.0031] unit decrease	Affymetrix [21347608] (imputed)	N
2366	chr2	233515246	233515247	rs4973549	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	2q37.1	EFHD1	rs4973549-?	NR	3E-43		0.0057	[0.0047-0.0067] unit decrease	Affymetrix [21347608] (imputed)	N
2366	chr2	233516534	233516534	rs141002010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	2q37.1		rs141002010-AAAAC	NR	3E-54		0.0302	[0.026-0.034] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
2366	chr2	233517700	233517701	rs4973550	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	2q37.1	EFHD1	rs4973550-G	0.397207	6E-49		0.00766509	[0.0066-0.0087] unit decrease	Affymetrix [13995440] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	2q37.1		rs13395911-T	0.32931	1E-18		0.0335049	[0.026-0.041] unit increase	Illumina [13476165] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	2q37.1		rs13395911-T	NR	9E-28		0.0219	[0.018-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	2q37.1		rs13395911-T	0.328951	2E-11		0.0254534	[0.018-0.033] unit increase	Illumina [13478956] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	2q37.1		rs13395911-T	0.328768	3E-22		0.0359819	[0.029-0.043] unit increase	Illumina [13478866] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	2q37.1	EFHD1	rs13395911-A	0.401301	5E-53		0.00611107	[0.0053-0.0069] unit decrease	Affymetrix [13995440] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	2q37.1	EFHD1	rs13395911-T	0.6	2E-23		9.99	z-score increase	Affymetrix [4314223] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	2q37.1	EFHD1	rs13395911-T	0.6	4E-50		14.9	z-score increase	Affymetrix [4312306] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q37.1	EFHD1	rs13395911-?		6E-14		0.0325	[0.024-0.041] unit increase	Illumina [31500000] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	2q37.1	EFHD1	rs13395911-?		2E-20		0.0347	[0.027-0.042] unit increase	Illumina [31500000] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	2q37.1		rs13395911-?	0.3994	3E-8		0.008201	unit decrease	NR [6200000] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	2q37.1	EFHD1	rs13395911-?	NR	5E-16		0.03662	[0.028-0.045] unit increase novel	Illumina [6108953] (imputed)	N
2366	chr2	233520253	233520254	rs13395911	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	2q37.1	EFHD1	rs13395911-?	NR	2E-16		0.03437	[0.026-0.043] unit increase	Illumina [6108953] (imputed)	N
2366	chr2	233543891	233543892	rs11681297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11681297-A	NR	1E-14		0.025	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
2366	chr2	233543891	233543892	rs11681297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11681297-A	NR	4E-9		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
2366	chr2	233550960	233550961	rs6738529	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q37.1	EFHD1	rs6738529-G	NR	6E-9	(EA)	1.0706638	[1.05-1.09]	Illumina [6627481] (imputed)	N
2366	chr2	233551638	233551639	rs7561857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs7561857-G	NR	4E-15		0.0314	[0.024-0.039] unit increase	Affymetrix [9000000] (imputed)	N
2366	chr2	233552663	233552664	rs77866552	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	2q37.1	NR	rs77866552-G	0.96	7E-7		1.5625	[NR]	Illumina [803202]	N
2366	chr2	233553566	233553567	rs1108252	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q37.1	NR	rs1108252-T	NR	3E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
2366	chr2	233554195	233554196	rs116212486	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q37.1	intergenic	rs116212486-A	0.028	2E-6		3.92	[2.13-7.21]	Illumina [1556551]	N
2366	chr2	233557645	233557646	rs4458205	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	2q37.1	EFHD1, GIGYF2	rs4458205-T	0.35	4E-8		1.05	[1.03-1.07]	Illumina [5167567] (imputed)	N
2366	chr2	233557989	233557990	rs10209575	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q37.1	NR	rs10209575-?	NR	5E-6		0.0079021	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
2366	chr2	233562196	233562197	rs4144797	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	2q37.1		rs4144797-?	NR	5E-15		0.0235	NR unit decrease	NR [4484088] (imputed)	N
2366	chr2	233562196	233562197	rs4144797	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	2q37.1		rs4144797-?	NR	1E-10		0.0213	NR unit decrease	NR [4425810] (imputed)	N
2366	chr2	233562196	233562197	rs4144797	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	2q37.1	C2orf82, EFHD1, GIGYF2, KCNJ13, NGEF	rs4144797-?	NR	4E-16		1.085	[1.07-1.1]	Illumina [8000000] (imputed)	N
2366	chr2	233569934	233569935	rs13029336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q37.1		rs13029336-A	NR	1E-16		0.0137	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
2367	chr2	233571603	233571604	rs143913735	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	2q37.1	NR	rs143913735-C	0.9805	4E-8		2.5143	[1.62-3.41] unit increase	Affymetrix, Illumina [12989038] (imputed)	N
2367	chr2	233584108	233584109	rs13003675	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	2q37.1	GIGYF2	rs13003675-T	0.358242	3E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
2367	chr2	233584108	233584109	rs13003675	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	2q37.1	KCNJ13, GIGYF2	rs13003675-T	0.361	2E-6		1.04	[1.03-1.06]	Affymetrix [9149595] (imputed)	N
2367	chr2	233585298	233585299	rs6755070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.1	GIGYF2	rs6755070-T	NR	1E-12		0.0210844	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
2367	chr2	233585298	233585299	rs6755070	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	GIGYF2	rs6755070-T	0.3501	2E-23		0.0198	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	2q37.1		rs6704768-?	NR	3E-17		0.029	NR unit decrease	NR [4428082] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	2q37.1	NR	rs6704768-A	0.5288	6E-10		0.067679	[0.046-0.089] unit decrease	NR [NR]	N
2367	chr2	233592500	233592501	rs6704768	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	2q37.1	NR	rs6704768-?		2E-8				NR [8377093]	N
2367	chr2	233592500	233592501	rs6704768	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q37.1	GIGYF2	rs6704768-?	NR	1E-14		0.015298749	[0.011-0.019] unit increase	NR [7306098]	N
2367	chr2	233592500	233592501	rs6704768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.1	Intergenic	rs6704768-A	0.5662	1E-26	(MTAG)	0.0193	[0.016-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.1	Intergenic	rs6704768-A	0.5664	2E-36	(MTAG)	0.021	[0.018-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.1		rs6704768-A	0.5648	2E-16		0.0116	[0.0089-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.1	Intergenic	rs6704768-A	0.5648	3E-24	(MTAG)	0.0134	[0.011-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2367	chr2	233592500	233592501	rs6704768	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q37.1	C2orf82, GIGYF2, KCNJ13, NGEF	rs6704768-?		3E-10		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
2367	chr2	233592500	233592501	rs6704768	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	2q37.1	C2orf82, EFHD1, GIGYF2, KCNJ13, NGEF	rs6704768-G	0.448	2E-12		1.0752687	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
2367	chr2	233593498	233593499	rs17164	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q37.1	NR	rs17164-?	NR	5E-12		1.0700451	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
2367	chr2	233614818	233614819	rs34880628	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q37.1	GIGYF2	rs34880628-?	NR	1E-8		0.0297265	[0.02-0.04] unit increase	Illumina [4804024] (imputed)	N
2367	chr2	233633459	233633460	rs1801251	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q37.1	GIGYF2, KCNJ13	rs1801251-A	0.3568	3E-10		0.0416	[0.029-0.055] unit increase	NR [8041861] (imputed)	N
2367	chr2	233645967	233645968	rs2592105	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	2q37.1		rs2592105-?	NR	5E-8		0.0168	unit decrease	NR [NR]	N
2367	chr2	233649289	233649290	rs79928194	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	2q37.1	GIGYF2, KCNJ13	rs79928194-C	NR	1E-6		1.1600928	[1.09-1.23]	Illumina [8933939] (imputed)	N
2367	chr2	233649426	233649427	rs283477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.1		rs283477-?	NR	1E-34				NR [~ 8900000] (imputed)	N
2367	chr2	233655235	233655236	rs13393621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13393621-G	NR	7E-15		0.039	[0.029-0.049] unit increase	Affymetrix [9000000] (imputed)	N
2368	chr2	233707610	233707611	rs12694917	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q37.1	Intergenic	rs12694917-T	0.6401	9E-13	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2368	chr2	233712226	233712226	rs760157231	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Suicide attempts	3,470 European ancestry cases, 150,090 European ancestry controls	NA	2q37.1	NR	rs760157231-CACA	0.44	1E-6		1.49	[-0.6464-3.6264]	Affymetrix [at least 143006] (imputed)	N
2368	chr2	233717303	233717306	rs143986476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	2q37.1		rs143986476-A	NR	1E-13		0.2016	[0.15-0.25] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
2368	chr2	233736243	233736244	rs2675968	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q37.1	NR	rs2675968-T	NR	5E-6	(5 degree of freedom test)	1.016	[0.99-1.04]	NR [1252901] (imputed)	N
2368	chr2	233743108	233743109	rs778371	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	2q37.1		rs778371-?	NR	3E-15		0.0291	NR unit increase	NR [4502103] (imputed)	N
2368	chr2	233743108	233743109	rs778371	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	2q37.1	NR	rs778371-?	NR	5E-12				Illumina [up to 5582932] (imputed)	N
2368	chr2	233743108	233743109	rs778371	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q37.1	NGEF	rs778371-G	NR	8E-12	(EA)	1.0854228	[1.06-1.11]	Illumina [6627481] (imputed)	N
2368	chr2	233743108	233743109	rs778371	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	2q37.1	NGEF	rs778371-G	NR	2E-13		1.0752687	[1.05-1.1]	Illumina [6627481] (imputed)	N
2368	chr2	233743108	233743109	rs778371	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	2q37.1	C2orf82, NGEF	rs778371-G	NR	2E-13		1.0834236	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
2368	chr2	233743108	233743109	rs778371	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	2q37.1	NR	rs778371-G	NR	2E-12		1.0869565	[NR]	Illumina [7158791] (imputed)	N
2368	chr2	233743108	233743109	rs778371	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	2q37.1	GIGYF2, KCNJ13, C2orf82, NGEF	rs778371-G	0.281	2E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [9871789]	N
2368	chr2	233743793	233743794	rs35811586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.1		rs35811586-T	0.0547	5E-12		0.0217	[0.016-0.028] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2368	chr2	233743793	233743794	rs35811586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.1	Intergenic	rs35811586-T	0.0547	9E-14	(MTAG)	0.0218	[0.016-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2368	chr2	233745332	233745333	rs778368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	2q37.1		rs778368-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2368	chr2	233752550	233752551	rs2250660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.1	Intergenic	rs2250660-C	0.5104	7E-14	(MTAG)	0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2368	chr2	233752550	233752551	rs2250660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.1	Intergenic	rs2250660-C	0.51	9E-19	(MTAG)	0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2368	chr2	233752550	233752551	rs2250660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.1		rs2250660-C	0.5009	1E-8		0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2368	chr2	233752638	233752639	rs2250665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q37.1		rs2250665-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2368	chr2	233753339	233753340	rs2675956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q37.1	Intergenic	rs2675956-G	0.6358	9E-22		0.0194	[0.015-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2368	chr2	233753339	233753340	rs2675956	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q37.1	Intergenic	rs2675956-G	0.636	1E-29		0.0266	[0.022-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2368	chr2	233758883	233758884	rs1554218	30169657	Ashar FN	2018-08-28	Eur Heart J	A comprehensive evaluation of the genetic architecture of sudden cardiac arrest.	Sudden cardiac arrest	up to 3,939 European ancestry cases, up to 25,989 European ancestry controls	up to 4,751 European ancestry cases, up to 35,582 European ancestry controls, 152 African American cases, 176 African American controls, 225 Asian American cases, 199 Asian American controls	2q37.1	NGEF	rs1554218-T	0.113	5E-7	(EA)	1.17	[1.10-1.25]	Affymetrix, Illumina [at least 306655] (imputed)	N
2368	chr2	233758883	233758884	rs1554218	30169657	Ashar FN	2018-08-28	Eur Heart J	A comprehensive evaluation of the genetic architecture of sudden cardiac arrest.	Sudden cardiac arrest	up to 3,939 European ancestry cases, up to 25,989 European ancestry controls	up to 4,751 European ancestry cases, up to 35,582 European ancestry controls, 152 African American cases, 176 African American controls, 225 Asian American cases, 199 Asian American controls	2q37.1	NGEF	rs1554218-T	0.112	1E-6		1.17	[1.10-1.24]	Affymetrix, Illumina [at least 306655] (imputed)	N
2368	chr2	233788349	233788350	rs778353	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	2q37.1	NR	rs778353-?		1E-8				NR [520857]	N
2368	chr2	233788349	233788350	rs778353	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	2q37.1	NGEF, C2orf82	rs778353-?		2E-11				NR [6786993] (imputed)	N
2368	chr2	233790170	233790171	rs747462	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	2q37.1	NR	rs747462-?		8E-9				NR [8377093]	N
2368	chr2	233790474	233790475	rs2880986	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs2880986-?	NR	2E-9				NR [2625067]	N
2368	chr2	233790521	233790522	rs2675952	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q37.1		rs2675952-?	NR	7E-26		0.0215749	[0.017-0.026] unit decrease	Affymetrix [20259828] (imputed)	N
2368	chr2	233790521	233790522	rs2675952	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q37.1	NGEF	rs2675952-T	0.567999	3E-6	(men)	0.0238103	[0.014-0.034] unit decrease	NR [17166351] (imputed)	N
2368	chr2	233790521	233790522	rs2675952	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q37.1	NGEF	rs2675952-T	0.566788	1E-12		0.0243498	[0.018-0.031] unit decrease	NR [17166351] (imputed)	N
2368	chr2	233790521	233790522	rs2675952	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q37.1	NGEF	rs2675952-T	0.565731	1E-6	(women)	0.0227339	[0.014-0.032] unit decrease	NR [17166351] (imputed)	N
2368	chr2	233792206	233792207	rs2944590	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q37.1	NGEF	rs2944590-G	0.560034	9E-28		0.0201148	[0.017-0.024] unit decrease	NR [13737936] (imputed)	N
2368	chr2	233792424	233792425	rs2592118	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	2q37.1	NR	rs2592118-T	0.4414	2E-8		0.06117973	[0.04-0.083] unit increase	NR [NR]	N
2368	chr2	233792424	233792425	rs2592118	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	2q37.1	C2orf82, NGEF	rs2592118-T	0.444	3E-6		1.05432	[1.03-1.08]	NR [9372253] (imputed)	N
2368	chr2	233793210	233793211	rs73102769	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs73102769-?	NR	9E-11				NR [2625067]	N
2368	chr2	233793210	233793211	rs73102769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA			rs73102769-?	NR	3E-25				NR [~ 8900000] (imputed)	N
2368	chr2	233793210	233793211	rs73102769	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA		NR	rs73102769-?	NR	7E-7		0.0086284	[0.0052-0.012] unit increase	Affymetrix [805426] (imputed)	N
2368	chr2	233794820	233794821	rs2944591	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	2q37.1	C2orf82, GIGYF2, KCNJ13, NGEF	rs2944591-T		1E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
2368	chr2	233796251	233796252	rs79984888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs79984888-A	NR	2E-13		0.0375	[0.028-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
2368	chr2	233796251	233796252	rs79984888	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs79984888-A	NR	7E-11		0.0359	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
2368	chr2	233804329	233804330	rs778352	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	2q37.1	NR	rs778352-A	0.309145	2E-8		0.04235338	[0.027-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2368	chr2	233806770	233806771	rs4973576	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	2q37.1	NR	rs4973576-?		1E-9		0.0145232	[0.0099-0.0192] unit decrease	Affymetrix [19400418] (imputed)	N
2368	chr2	233810198	233810199	rs13400104	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	2q37.1	NR	rs13400104-G		5E-6		0.0647	[0.028-0.102] SD units increase	NR [10700000] (imputed)	N
2369	chr2	233845149	233845150	rs73107106	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q37.1	NR	rs73107106-T	0.112	5E-6	(IFNalpha_STAT1_of_CD56pCD16p)			Illumina [5084123] (imputed)	N
2369	chr2	233846879	233846880	rs113732002	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-452 sp000434035 abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.1		rs113732002-C	0.0682663	2E-8		0.202097	[0.13-0.27] unit increase	Illumina [7980478] (imputed)	N
2369	chr2	233846879	233846880	rs113732002	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-452 abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.1		rs113732002-C	0.0682663	2E-8		0.206204	[0.13-0.28] unit increase	Illumina [7980478] (imputed)	N
2369	chr2	233846879	233846880	rs113732002	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	2q37.1	NGEF	rs113732002-A		3E-7		0.1272	[0.079-0.176] unit decrease	Illumina [NR]	N
2369	chr2	233861959	233861960	rs4643532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs4643532-C	NR	4E-29		0.0382	[0.032-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
2369	chr2	233861959	233861960	rs4643532	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs4643532-C	NR	2E-12		0.0259	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
2369	chr2	233866299	233866300	rs79943674	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.1	NGEF	rs79943674-?		5E-7				Illumina [4322238] (imputed)	N
2369	chr2	233885494	233885495	rs11677455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11677455-T	NR	2E-20		0.0494	[0.039-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
2369	chr2	233885494	233885495	rs11677455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11677455-T	NR	6E-13		0.0416	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
2369	chr2	233891214	233891215	rs6739218	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6739218-C	NR	8E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
2369	chr2	233896497	233896498	rs2233375	24152035	Goodbourn PT	2013-10-23	Genes Brain Behav	Variants in the 1q21 risk region are associated with a visual endophenotype of autism and schizophrenia.	Contrast sensitivity	985 European ancestry individuals	NA	2q37.1	NEU2, INPP5D, NGEF	rs2233375-?	0.0992	4E-6		3.63	[NR] unit increase	Illumina [642758]	N
2369	chr2	233911539	233911540	rs10202216	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.1		rs10202216-?	NR	3E-8				NR [NR]	N
2369	chr2	233911541	233911542	rs10165997	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.1		rs10165997-?	NR	1E-8				NR [NR]	N
2369	chr2	233911541	233911542	rs10165997	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.1		rs10165997-?	NR	2E-8				NR [NR]	N
2369	chr2	233922656	233922657	rs4973598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.1	Intergenic	rs4973598-A	0.132	2E-9	(MTAG)	0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2369	chr2	233922656	233922657	rs4973598	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.1	Intergenic	rs4973598-A	0.1325	4E-8	(MTAG)	0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2369	chr2	233932257	233932258	rs76999017	26503814	Hardin M	2016-10-27	Pharmacogenomics J	A genome-wide analysis of the response to inhaled ?2-agonists in chronic obstructive pulmonary disease.	Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	5,766 European ancestry cases, 811 African American cases	NA	2q37.1	INPP5D	rs76999017-G	0.95	1E-6	(BDRBASE, AA)	8.263	[4.99-11.54] unit decrease	Illumina [NR] (imputed)	N
2369	chr2	233943292	233943293	rs6708049	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q37.1	Intergenic	rs6708049-T	0.118	3E-8		0.0167	[0.011-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2369	chr2	233945564	233945565	rs7425956	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 855 Austrian ancestry controls	NA	2q37.1	Intergenic	rs7425956-?		9E-6		1.4108351	[NR]	Affymetrix [492217] (imputed)	N
2369	chr2	233945564	233945565	rs7425956	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	2q37.1	Intergenic	rs7425956-?		7E-6		1.3475273	[NR]	Affymetrix [492217] (imputed)	N
2369	chr2	233950000	233950001	rs56404114	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	2q37.1		rs56404114-?	NR	7E-6		0.04	[0.02-0.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2369	chr2	233963249	233963250	rs6437097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q37.1	INPP5D	rs6437097-C	0.704643	1E-12		0.01759713	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2370	chr2	233963673	233963677	rs140623826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q37.1		rs140623826-T	NR	4E-8		0.0152	[0.0097-0.0207] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
2370	chr2	233966849	233966850	rs74461644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs74461644-T	NR	5E-26		0.0695	[0.057-0.082] unit increase	Affymetrix [9000000] (imputed)	N
2370	chr2	233966849	233966850	rs74461644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs74461644-T	NR	2E-14		0.0541	[0.04-0.068] unit increase	Affymetrix [9000000] (imputed)	N
2370	chr2	233971803	233971804	rs115107477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs115107477-A	NR	1E-22		0.0779	[0.062-0.093] unit increase	Affymetrix [9000000] (imputed)	N
2370	chr2	233971803	233971804	rs115107477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs115107477-A	NR	2E-16		0.0702	[0.054-0.087] unit increase	Affymetrix [9000000] (imputed)	N
2370	chr2	233981911	233981912	rs10933431	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	2q37.1	INPPD5	rs10933431-G	NR	3E-6		4.708	NR z-score decrease	Affymetrix [10847151] (imputed)	N
2370	chr2	233981911	233981912	rs10933431	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	2q37.1	INPPD5	rs10933431-G	0.235	9E-10		6.13	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
2370	chr2	233981911	233981912	rs10933431	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	2q37.1	INPPD5	rs10933431-G	NR	2E-6		4.7898254	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
2370	chr2	233981911	233981912	rs10933431	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q37.1	NR	rs10933431-?	NR	5E-8				Affymetrix [7795605] (imputed)	N
2370	chr2	233998480	233998481	rs10933436	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	2q37.1	intergenic	rs10933436-A	0.49	7E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2370	chr2	234068475	234068476	rs35349669	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	2q37.1	INPP5D	rs35349669-T	NR	6E-6		0.007522	NR unit increase	Affymetrix [10847151] (imputed)	N
2370	chr2	234068475	234068476	rs35349669	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	2q37.1	INPP5D	rs35349669-T	0.4983	5E-9		5.85	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
2370	chr2	234068475	234068476	rs35349669	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	2q37.1	INPP5D	rs35349669-T	NR	8E-6		4.46	NR z-score increase	Illumina [up to 9862738] (imputed)	N
2370	chr2	234068475	234068476	rs35349669	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	2q37.1	NR	rs35349669-?	NR	2E-10		1.0525334	[1.03595530394875-1.06937674771915]	Affymetrix [7795605] (imputed)	N
2370	chr2	234068475	234068476	rs35349669	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	2q37.1	INPP5D	rs35349669-T	0.488	3E-8		1.08	[1.05-1.11]	Illumina [7055881] (imputed)	N
2370	chr2	234082141	234082142	rs141013376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs141013376-C	NR	1E-10		0.0324	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
2370	chr2	234082576	234082577	rs7597763	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	2q37.1		rs7597763-?	NR	5E-9				Illumina [NR] (imputed)	N
2370	chr2	234089475	234089476	rs11684564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.1	INPP5D	rs11684564-C	0.570219	7E-11		0.015170042	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2370	chr2	234089475	234089476	rs11684564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.1	INPP5D	rs11684564-C	0.570212	1E-10		0.014962804	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2370	chr2	234093804	234093805	rs7584458	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	2q37.1	INPP5D	rs7584458-G	NR	3E-6		0.114029	[0.066-0.162] unit increase	Illumina [7433384] (imputed)	N
2371	chr2	234113056	234113057	rs7346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q37.1	INPP5D	rs7346-A	0.190294	9E-10		0.017254205	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2371	chr2	234113056	234113057	rs7346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q37.1	INPP5D	rs7346-A	0.190252	6E-13		0.02075665	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2371	chr2	234113056	234113057	rs7346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q37.1	INPP5D	rs7346-A	0.190265	9E-11		0.01839191	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2371	chr2	234113056	234113057	rs7346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q37.1	NR	rs7346-A	0.19005	9E-11		0.016578	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2371	chr2	234113300	234113301	rs9247	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs9247-T	0.208874	4E-10				Affymetrix, Illumina [23467995] (imputed)	N
2371	chr2	234113300	234113301	rs9247	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q37.1	NR	rs9247-C	0.8088	3E-9		1.0461345	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
2371	chr2	234113300	234113301	rs9247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q37.1		rs9247-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2371	chr2	234113421	234113421	rs70958391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q37.1	INPP5D	rs70958391-CGTATGTGT	0.192544	4E-9		0.016494237	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2371	chr2	234113421	234113421	rs70958391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q37.1	NR	rs70958391-I	0.192681	8E-12		0.017442	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2371	chr2	234114242	234114243	rs62192898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	2q37.1		rs62192898-C	0.451541251	2E-8		0.1388864	[0.09-0.188] unit increase	Illumina [13428180] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q37.1		rs56235204-C	NR	2E-21		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q37.1	INPP5D	rs56235204-C	0.189429	2E-11		0.018991865	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q37.1	INPP5D	rs56235204-C	0.1904	2E-19		0.04122401	[0.032-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q37.1	INPP5D	rs56235204-C	0.1904	3E-20		0.04176084	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q37.1	INPP5D	rs56235204-C	0.1904	6E-20		0.04167263	[0.033-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2371	chr2	234114532	234114533	rs56235204	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q37.1	INPP5D	rs56235204-C	0.1904	2E-14		0.03490725	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q37.1		rs1057258-C	0.822	3E-14				Affymetrix [10369434] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.1	INPP5D	rs1057258-T	0.177891	5E-34		0.035700113	[0.03-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.1	INPP5D	rs1057258-T	0.177888	2E-24		0.029936293	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs1057258-T	0.211643	5E-35				Affymetrix, Illumina [19872809] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q37.1	NR	rs1057258-T	0.178094	3E-35		0.032126	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q37.1	NR	rs1057258-?	NR	3E-7		1.0309278	NR	Affymetrix [15688218] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.1		rs1057258-?	NR	1E-33				NR [~ 8900000] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q37.1	INPP5D	rs1057258-C	0.8	1E-10		1.045	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
2371	chr2	234115628	234115629	rs1057258	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q37.1	INPP5D	rs1057258-T	0.1783	2E-13		0.03417721	[0.025-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2371	chr2	234119946	234119947	rs72972302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs72972302-T	NR	1E-27		0.043	[0.035-0.051] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234119946	234119947	rs72972302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs72972302-T	NR	1E-17		0.0363	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234127320	234127321	rs6757418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6757418-C	NR	6E-18		0.0285	[0.022-0.035] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234127320	234127321	rs6757418	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs6757418-C	NR	9E-14		0.0266	[0.02-0.034] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234136754	234136755	rs62192905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62192905-A	NR	2E-21		0.0504	[0.04-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234136754	234136755	rs62192905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62192905-A	NR	1E-11		0.0389	[0.028-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234139630	234139631	rs76384978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs76384978-G	NR	4E-26		0.1053	[0.086-0.125] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234139630	234139631	rs76384978	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs76384978-G	NR	9E-14		0.0797	[0.059-0.101] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234142618	234142619	rs72974350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs72974350-A	NR	8E-235		0.193	[0.18-0.2] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234142618	234142619	rs72974350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs72974350-A	NR	4E-141		0.1595	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234145943	234145944	rs13418066	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q37.1	INPP5D, ATG16L1	rs13418066-C	0.51	3E-10		6.31	z-score increase	Affymetrix [4311822] (imputed)	N
2371	chr2	234152508	234152509	rs13432541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13432541-A	NR	3E-49		0.0691	[0.06-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234152508	234152509	rs13432541	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs13432541-A	NR	2E-32		0.0604	[0.05-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234158838	234158839	rs10210302	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	2q37.1	ATG16L1	rs10210302-T	0.48	5E-14		1.19	[1.01-1.41]	Affymetrix [469557]	N
2371	chr2	234161447	234161448	rs6752107	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q37.1	ATG16L1	rs6752107-?		3E-28				Illumina [9725440] (imputed)	N
2371	chr2	234161447	234161448	rs6752107	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q37.1	ATG16L1	rs6752107-?		2E-61				Illumina [9560910] (imputed)	N
2371	chr2	234161582	234161583	rs6738490	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.1	NR	rs6738490-?	NR	4E-78	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2371	chr2	234165776	234165777	rs2119503	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	2q37.1	ATG16L1	rs2119503-A	0.117	5E-8		0.048	[0.034-0.062] unit increase	NR [NR] (imputed)	N
2371	chr2	234165776	234165777	rs2119503	31319653	Jeon C	2019-07-12	Epidemiol Health	Bilirubin and risk of ischemic heart disease in Korea: A two-sample Mendelian randomization study.	Bilirubin levels	33,598 Korean ancestry individuals	NA	2q37.1	ATG16L1	rs2119503-A	NR	5E-37		0.053	[0.045-0.061] unit increase	NR [at least 830000] (imputed)	N
2371	chr2	234168789	234168790	rs35300242	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q37.1	ATG16L1	rs35300242-?	NR	5E-67	(subset analysis)			Illumina [130052]	N
2371	chr2	234168950	234168951	rs6758317	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Bilirubin levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	2q37.1	ATG16L1	rs6758317-T	0.129	3E-8		0.093	[0.06-0.126] unit increase	Affymetrix [546738]	N
2371	chr2	234171811	234171812	rs13011156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13011156-G	NR	2E-77		0.099	[0.089-0.109] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234171811	234171812	rs13011156	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs13011156-G	NR	3E-47		0.0825	[0.071-0.094] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234173502	234173503	rs12994997	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.1	NR	rs12994997-A	0.53	3E-41	(EA)	1.1429542		Affymetrix, Illumina [~ 9000000] (imputed)	N
2371	chr2	234173502	234173503	rs12994997	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	2q37.1	INPP5D, ATG16L1	rs12994997-A	0.523	4E-70		1.233	[1.193-1.274]	Affymetrix, Illumina [1230000] (imputed)	N
2371	chr2	234177848	234177849	rs182021046	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Total bilirubin levels	6,018 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	2q37.1		rs182021046-G	0.057300000000000004	6E-6		0.17	[0.092-0.248] unit decrease	Illumina [7880617]	N
2371	chr2	234180409	234180410	rs3828309	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	2q37.1	ATG16L1	rs3828309-G	0.53	2E-32		1.25	[NR]	Affymetrix, Illumina [635547] (imputed)	N
2371	chr2	234183367	234183368	rs2241880	22412388	Kenny EE	2012-03-08	PLoS Genet	A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.	Crohn's disease	737 Ashkenazi Jewish cases, 2,257  Ashkenazi Jewish controls	971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls	2q37.1	SAG, DGKD, INPP5D, USP40, ATG16L1	rs2241880-G	0.601	1E-12		1.32	[1.24-1.41]	Affymetrix, Illumina [1060934] (imputed)	N
2371	chr2	234183367	234183368	rs2241880	20570966	McGovern DP	2010-06-22	Hum Mol Genet	Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.	Crohn's disease	896 European ancestry cases, 3,204 European ancestry controls	1,174 European ancestry cases, 357 European ancestry controls	2q37.1	ATG16L1	rs2241880-?	NR	3E-6		1.32	[1.18-1.47]	Illumina [304825]	N
2371	chr2	234183367	234183368	rs2241880	17435756	Rioux JD	2007-04-15	Nat Genet	Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis.	Crohn's disease	946 cases, 977 controls	530 trios, 353 cases, 207 controls	2q37.1	ATG16L1	rs2241880-G	0.55	1E-13		1.45	[1.27-1.64]	Illumina [304413]	N
2371	chr2	234183717	234183718	rs2241878	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q37.1	SCARNA5	rs2241878-T	0.476213	3E-13		0.00162545	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
2371	chr2	234183737	234183738	rs73998327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs73998327-G	NR	3E-335		0.1792	[0.17-0.19] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234183737	234183738	rs73998327	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs73998327-G	NR	4E-223		0.1564	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234184416	234184417	rs3792109	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	2q37.1		rs3792109-?	NR	2E-16		0.068	NR unit increase	NR [5890016] (imputed)	N
2371	chr2	234184416	234184417	rs3792109	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	2q37.1	ATG16L1	rs3792109-A	NR	5E-9		1.38	[NR]	Illumina [508934]	N
2371	chr2	234184416	234184417	rs3792109	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	2q37.1	ATG16L1	rs3792109-A	0.529	7E-41		1.34	[1.29-1.40]	Affymetrix, Illumina [953241] (imputed)	N
2371	chr2	234184951	234184952	rs3792108	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs ulcerative colitis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 6,968 ulcerative colitis cases	14,594 Crohn's disease cases, 10,679 ulcerative colitis cases	2q37.1		rs3792108-?	NR	4E-17		0.051	NR unit increase	NR [6490614] (imputed)	N
2371	chr2	234185266	234185267	rs36001488	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	2q37.1	ATG16L1	rs36001488-C	0.48	8E-11				Illumina [7347414] (imputed)	N
2371	chr2	234188015	234188015	rs5839475	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	2q37.1	NR	rs5839475-?	NR	9E-6		0.027	[0.015-0.039] unit decrease	Illumina [at least 560000] (imputed)	N
2371	chr2	234189960	234189961	rs62192955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62192955-G	NR	1E-327		0.1451	[0.14-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234189960	234189961	rs62192955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62192955-G	NR	9E-223		0.1302	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234189960	234189961	rs62192955	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q37.1	NR	rs62192955-G	NR	5E-17		0.0328	[0.025-0.04] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234191102	234191103	rs117809958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q37.1		rs117809958-A	0.016001765	1E-14		0.31840086	[0.24-0.4] unit increase	Illumina [13429769] (imputed)	N
2371	chr2	234191102	234191103	rs117809958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	2q37.1		rs117809958-A	NR	6E-14		0.2832	[0.21-0.36] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2371	chr2	234191102	234191103	rs117809958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q37.1		rs117809958-A	0.016890594	1E-11		0.29947078	[0.21-0.39] unit increase	Illumina [13134967] (imputed)	N
2371	chr2	234191102	234191103	rs117809958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	2q37.1		rs117809958-A	NR	1E-11		0.2995	[0.21-0.39] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2371	chr2	234191102	234191103	rs117809958	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	2q37.1	DGKD	rs117809958-A	0.018	2E-15		1.25	[1.18-1.32]	Affymetrix, Illumina [11800000] (imputed)	N
2371	chr2	234210971	234210972	rs6759896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q37.1		rs6759896-A	NR	1E-12		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
2371	chr2	234211047	234211048	rs6431270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6431270-A	NR	2E-151		0.0673	[0.062-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234211047	234211048	rs6431270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q37.1	NR	rs6431270-A	NR	2E-14		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234211047	234211048	rs6431270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs6431270-A	NR	2E-95		0.0575	[0.052-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234211047	234211048	rs6431270	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q37.1	NR	rs6431270-A	NR	8E-30		0.0304	[0.025-0.036] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234217869	234217870	rs183383266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs183383266-T	NR	3E-19		0.487	[0.38-0.59] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234217869	234217870	rs183383266	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs183383266-T	NR	5E-12		0.3911	[0.28-0.5] unit increase	Affymetrix [9000000] (imputed)	N
2371	chr2	234219546	234219547	rs1050627711	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	2q37.1		rs1050627711-T	NR	6E-8				Illumina [1084750]	N
2371	chr2	234219951	234219952	rs80271431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs80271431-A	NR	3E-191		0.2001	[0.19-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234219951	234219952	rs80271431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs80271431-A	NR	3E-117		0.1715	[0.16-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
2371	chr2	234224471	234224472	rs10172939	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	2q37.1	SAG	rs10172939-T	0.412652	4E-6		0.794	[0.72 - 0.877]	Illumina [5400100] (imputed)	N
2372	chr2	234227692	234227693	rs2304776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	2q37.1	NR	rs2304776-T	0.506843	4E-18		0.016413	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2372	chr2	234229294	234229295	rs72976383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs72976383-T	NR	2E-468		0.3098	[0.3-0.32] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234229294	234229295	rs72976383	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs72976383-T	NR	3E-275		0.2513	[0.24-0.27] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234229467	234229468	rs137886124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs137886124-T	NR	3E-16		0.1685	[0.13-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234229467	234229468	rs137886124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs137886124-T	NR	7E-12		0.1537	[0.11-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234231400	234231401	rs78936963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs78936963-G	NR	1E-516		0.3599	[0.35-0.37] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234231400	234231401	rs78936963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs78936963-G	NR	2E-335		0.3066	[0.29-0.32] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234237187	234237188	rs201153410	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	2q37.1		rs201153410-?	NR	9E-8		16.5733	[15.55-17.6]	NR [663102]	N
2372	chr2	234248528	234248529	rs2879924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q37.1	NR	rs2879924-A	NR	7E-11		0.0156	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234249384	234249385	rs10803624	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs10803624-T	0.458731	2E-15				Affymetrix, Illumina [23472807] (imputed)	N
2372	chr2	234249734	234249735	rs10803625	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	2q37.1		rs10803625-C	NR	5E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2372	chr2	234255646	234255647	rs78338185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs78338185-T	NR	7E-40		0.1057	[0.09-0.121] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234255646	234255647	rs78338185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs78338185-T	NR	9E-34		0.1052	[0.088-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234257104	234257105	rs13003198	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	2q37.1	DGKD	rs13003198-T	0.39	4E-11		1.11	[1.07-1.14]	Affymetrix, Illumina [~ 5000000] (imputed)	N
2372	chr2	234257104	234257105	rs13003198	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	2q37.1	SAG	rs13003198-T	0.3693	3E-11		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2372	chr2	234257453	234257454	rs13014016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q37.1		rs13014016-G	NR	5E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2372	chr2	234259469	234259470	rs4663540	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q37.1	NR	rs4663540-G	0.624161	6E-12		0.013156	[0.0094-0.0169] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2372	chr2	234260878	234260879	rs62195072	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q37.1	NR	rs62195072-C	0.32445199999999996	3E-18		0.00756159	[0.0058-0.0093] unit increase	Affymetrix [16582909] (imputed)	N
2372	chr2	234260878	234260879	rs62195072	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q37.1	NR	rs62195072-C	0.32473700000000005	6E-14		0.00861773	[0.0062-0.011] unit increase	Affymetrix [16582621] (imputed)	N
2372	chr2	234260878	234260879	rs62195072	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q37.1	NR	rs62195072-C	0.32445199999999996	8E-14		0.00733892	[0.0054-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
2372	chr2	234260878	234260879	rs62195072	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q37.1	NR	rs62195072-C	0.32473700000000005	1E-11		0.00814615	[0.0056-0.0107] unit increase	Affymetrix [16582614] (imputed)	N
2372	chr2	234264847	234264848	rs1550532	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q37.1	NR	rs1550532-C	NR	8E-11		0.018	[0.012-0.024] mg/dl increase	Affymetrix [NR] (imputed)	N
2372	chr2	234264847	234264848	rs1550532	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	2q37.1	DGKD	rs1550532-C	0.31	8E-11		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
2372	chr2	234264847	234264848	rs1550532	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1	DGKD	rs1550532-?	0.317	3E-19		0.044	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
2372	chr2	234271521	234271522	rs34339006	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	2q37.1	DGKD	rs34339006-T	NR	2E-8		1.0752687	[1.05-1.11]	Affymetrix [at least 665500] (imputed)	N
2372	chr2	234271521	234271522	rs34339006	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	2q37.1	DGKD	rs34339006-?	NR	8E-17		0.04471	[0.034-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
2372	chr2	234272736	234272737	rs13015823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs13015823-G	0.133022	8E-29				Affymetrix, Illumina [24588908] (imputed)	N
2372	chr2	234272736	234272737	rs13015823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q37.1	NR	rs13015823-G	0.125251	3E-28		0.030577	[0.025-0.036] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2372	chr2	234273241	234273242	rs838705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	2q37.1		rs838705-A	0.708368	6E-14		0.0387796	[0.029-0.049] unit decrease	Illumina [13468899] (imputed)	N
2372	chr2	234273241	234273242	rs838705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.1		rs838705-?	NR	3E-8				NR [~ 8900000] (imputed)	N
2372	chr2	234273241	234273242	rs838705	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	2q37.1	SAG, DGKD	rs838705-A	NR	9E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2372	chr2	234274653	234274654	rs55664157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q37.1		rs55664157-A	NR	1E-15		0.0225	[0.017-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2372	chr2	234274653	234274654	rs55664157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q37.1	AC019221.4, DGKD	rs55664157-A	0.122767	2E-30		0.039491907	[0.033-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
2372	chr2	234274653	234274654	rs55664157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q37.1	AC019221.4, DGKD	rs55664157-A	0.122763	6E-22		0.033128437	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2372	chr2	234279260	234279261	rs60485593	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	2q37.1	DGKD, AC019221.4	rs60485593-C	0.1196	5E-12		0.03923927	[0.028-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2372	chr2	234287821	234287822	rs77900844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs77900844-A	NR	2E-217		0.2068	[0.19-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234287821	234287822	rs77900844	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs77900844-A	NR	1E-143		0.1843	[0.17-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234293860	234293861	rs4663580	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Bilirubin levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	2q37.1	DGKD	rs4663580-T	0.067	3E-8		0.125	[0.082-0.168] unit increase	Affymetrix [546738]	N
2372	chr2	234296443	234296444	rs838717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	2q37.1		rs838717-A	NR	8E-15		0.0893	[0.067-0.112] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
2372	chr2	234296443	234296444	rs838717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q37.1		rs838717-A	NR	5E-15		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2372	chr2	234296443	234296444	rs838717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q37.1		rs838717-A	NR	4E-84		0.0431	[0.039-0.047] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
2372	chr2	234296443	234296444	rs838717	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q37.1	NR	rs838717-A	0.5667	1E-60		0.003746	[0.0033-0.0042] unit decrease	Affymetrix [NR] (imputed)	N
2372	chr2	234296443	234296444	rs838717	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	2q37.1	DGKD	rs838717-G	0.43	2E-8		1.11	[1.07-1.15]	Affymetrix [~ 8400000] (imputed)	N
2372	chr2	234296649	234296650	rs838718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q37.1		rs838718-A	NR	2E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2372	chr2	234296649	234296650	rs838718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs838718-A	0.48828	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
2372	chr2	234296649	234296650	rs838718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.1	NR	rs838718-A	0.489608	3E-11				Affymetrix, Illumina [24558453] (imputed)	N
2372	chr2	234296649	234296650	rs838718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q37.1	NR	rs838718-A	0.484071	2E-11		0.012417	[0.0088-0.016] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2372	chr2	234301438	234301439	rs142882603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs142882603-G	NR	1E-42		0.2048	[0.18-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234301438	234301439	rs142882603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs142882603-G	NR	2E-27		0.1787	[0.15-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234303280	234303281	rs838720	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	2q37.1	NR	rs838720-G	0.4475	4E-9		0.0512	[0.034-0.068] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
2372	chr2	234303280	234303281	rs838720	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	2q37.1	NR	rs838720-G	0.384	4E-18		0.034	[0.026-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2372	chr2	234303280	234303281	rs838720	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	2q37.1	DGKD	rs838720-G	0.45	2E-9		1.05	1.04-1.07	Illumina [12557761] (imputed)	N
2372	chr2	234303336	234303337	rs6759355	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	2q37.1		rs6759355-T	0.547552909	9E-9		0.9525407	[0.936891606-0.968451213]	Illumina [8919992] (imputed)	N
2372	chr2	234303404	234303405	rs838721	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	2q37.1	DGKD	rs838721-A	0.437	4E-8		0.0314	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
2372	chr2	234307548	234307549	rs3762592	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	2q37.1	DGKD	rs3762592-T	0.62	2E-7		7.85	NR mg increase	NR [NR] (imputed)	N
2372	chr2	234308781	234308782	rs7584554	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	2q37.1	DGKD	rs7584554-T	0.46	1E-6		6.97	NR mg increase	NR [NR] (imputed)	N
2372	chr2	234311270	234311271	rs114252547	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114252547-G	NR	1E-476		0.302	[0.29-0.31] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234311270	234311271	rs114252547	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114252547-G	NR	3E-300		0.2539	[0.24-0.27] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234321057	234321058	rs115604196	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs115604196-G	NR	3E-182		0.2431	[0.23-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234321057	234321058	rs115604196	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs115604196-G	NR	3E-118		0.2151	[0.2-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234324191	234324192	rs838735	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	2q37.1	NR	rs838735-G	0.6157	4E-10		0.0294	[0.02-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2372	chr2	234325051	234325052	rs838737	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	2q37.1		rs838737-G	0.434528	2E-8		0.0234551	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
2372	chr2	234326070	234326071	rs72980341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs72980341-C	NR	2E-383		0.2988	[0.28-0.31] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234326070	234326071	rs72980341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs72980341-C	NR	3E-225		0.242	[0.23-0.26] unit increase	Affymetrix [9000000] (imputed)	N
2372	chr2	234328301	234328302	rs71421697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q37.1		rs71421697-T	NR	3E-10		0.0209	[0.014-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2372	chr2	234329815	234329816	rs2924808	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q37.1	NR	rs2924808-C	0.34547000000000005	2E-8		0.00696828	[0.0044-0.0095] unit increase	Affymetrix [16585854] (imputed)	N
2372	chr2	234329815	234329816	rs2924808	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q37.1	NR	rs2924808-C	0.34547000000000005	3E-6		0.00708077	[0.0042-0.01] unit increase	Affymetrix [16585866] (imputed)	N
2372	chr2	234332195	234332196	rs114748237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114748237-T	NR	4E-48		0.1076	[0.093-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234332195	234332196	rs114748237	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114748237-T	NR	3E-38		0.1039	[0.088-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
2372	chr2	234340998	234340999	rs71421698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	2q37.1	DGKD	rs71421698-A	0.100921	1E-14		0.028337955	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2372	chr2	234356243	234356244	rs145966524	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DGKD	rs145966524-?	NR	6E-10	(male)	2.4477	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2372	chr2	234356243	234356244	rs145966524	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DGKD	rs145966524-?	NR	1E-8		1.68185	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2373	chr2	234357943	234357944	rs113483143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs113483143-T	NR	2E-33		0.3577	[0.3-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234357943	234357944	rs113483143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs113483143-T	NR	5E-21		0.3111	[0.25-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234369486	234369487	rs2971857	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.1	DGKD	rs2971857-A	0.5752	4E-10		0.0119	[0.0082-0.0156] unit decrease	Affymetrix [18391927] (imputed)	N
2373	chr2	234377184	234377185	rs139085833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs139085833-T	NR	2E-19		0.4848	[0.38-0.59] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234377184	234377185	rs139085833	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs139085833-T	NR	5E-17		0.4766	[0.37-0.59] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234383009	234383010	rs2924810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.1	Intergenic	rs2924810-A	0.1752	6E-9	(MTAG)	0.0137	[0.009-0.0184] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2373	chr2	234394110	234394111	rs62192762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62192762-A	NR	1E-238		0.2009	[0.19-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234394110	234394111	rs62192762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62192762-A	NR	1E-161		0.1806	[0.17-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234394488	234394489	rs143661480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs143661480-C	NR	1E-18		0.1803	[0.14-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234394488	234394489	rs143661480	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs143661480-C	NR	1E-13		0.1656	[0.12-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234399120	234399121	rs838563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs838563-G	NR	1E-72		0.1179	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234399120	234399121	rs838563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs838563-G	NR	7E-41		0.0939	[0.08-0.108] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234399120	234399121	rs838563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q37.1	NR	rs838563-G	NR	2E-9		0.0408	[0.027-0.054] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234406654	234406655	rs6704644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6704644-T	NR	1E-1043		0.2738	[0.27-0.28] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234406654	234406655	rs6704644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs6704644-T	NR	1E-614		0.2241	[0.22-0.23] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234406654	234406655	rs6704644	21646302	Bielinski SJ	2011-06-06	Mayo Clin Proc	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	USP40	rs6704644-?	0.11	8E-8		0.076	[0.05-0.11] mg/dL increase	Illumina [583129]	N
2373	chr2	234407419	234407420	rs114099762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114099762-C	NR	9E-655		0.4053	[0.39-0.42] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234407419	234407420	rs114099762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114099762-C	NR	4E-399		0.3332	[0.32-0.35] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234417563	234417564	rs111712352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs111712352-T	NR	2E-616		0.32	[0.31-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234417563	234417564	rs111712352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs111712352-T	NR	2E-348		0.2665	[0.25-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234424541	234424542	rs115700531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs115700531-C	NR	8E-54		0.1427	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234424541	234424542	rs115700531	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs115700531-C	NR	2E-34		0.1237	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	7E-9	(162 ms)	0.0377696	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	5E-8	(224 ms)	0.0373344	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	4E-9	(160 ms)	0.038793	[0.025-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	4E-8	(200 ms)	0.035714	[0.022-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	4E-8	(182 ms)	0.0355456	[0.022-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	4E-8	(174 ms)	0.0359056	[0.023-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	3E-8	(202 ms)	0.0367035	[0.023-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	3E-8	(190 ms)	0.0367883	[0.023-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	2E-8	(192 ms)	0.0367064	[0.023-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	2E-8	(164 ms)	0.0367525	[0.023-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234429739	234429739	rs141501074	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	2q37.1	USP40	rs141501074-T	0.796126	1E-8	(166 ms)	0.0375906	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2373	chr2	234432122	234432123	rs146371325	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs146371325-A	NR	1E-9		0.4024	[0.27-0.53] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234436068	234436069	rs36075906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs36075906-T	NR	2E-107		0.1241	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234436068	234436069	rs36075906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs36075906-T	NR	2E-73		0.1113	[0.099-0.123] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234436068	234436069	rs36075906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q37.1	NR	rs36075906-T	NR	3E-9		0.0349	[0.023-0.046] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234436068	234436069	rs36075906	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Bilirubin levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	2q37.1	USP40	rs36075906-T	0.271	7E-12		0.085	[0.061-0.109] unit increase	Affymetrix [546738]	N
2373	chr2	234440563	234440564	rs114644056	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USP40	rs114644056-?	NR	6E-10	(male)	2.85427	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2373	chr2	234440563	234440564	rs114644056	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		USP40	rs114644056-?	NR	2E-9		1.65938	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2373	chr2	234449752	234449753	rs1545524	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.1	Intergenic	rs1545524-A	0.8267	2E-8	(MTAG)	0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2373	chr2	234475414	234475415	rs62192778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62192778-A	NR	7E-751		0.1919	[0.19-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234475414	234475415	rs62192778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62192778-A	NR	2E-513		0.1732	[0.17-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234477459	234477460	rs13401703	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.1	NR	rs13401703-?	NR	1E-10				Affymetrix [NR]	N
2373	chr2	234479376	234479377	rs12993249	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	2q37.1	USP40	rs12993249-G	0.378	5E-8		0.066	[0.058-0.074] unit increase	NR [NR] (imputed)	N
2373	chr2	234479376	234479377	rs12993249	31319653	Jeon C	2019-07-12	Epidemiol Health	Bilirubin and risk of ischemic heart disease in Korea: A two-sample Mendelian randomization study.	Bilirubin levels	33,598 Korean ancestry individuals	NA	2q37.1	USP40	rs12993249-G	NR	2E-105		0.06	[0.054-0.066] unit increase	NR [at least 830000] (imputed)	N
2373	chr2	234482249	234482250	rs13002399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13002399-T	NR	2E-352		0.1134	[0.11-0.12] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234482249	234482250	rs13002399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	2q37.1	NR	rs13002399-T	NR	3E-12		0.0206	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234482249	234482250	rs13002399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs13002399-T	NR	7E-233		0.1	[0.094-0.106] unit increase	Affymetrix [9000000] (imputed)	N
2373	chr2	234482249	234482250	rs13002399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	2q37.1	NR	rs13002399-T	NR	1E-21		0.0283	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2373	chr2	234483962	234483963	rs10182651	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	2q37.1	NR	rs10182651-A	NR	1E-9	(LME model)	0.63574	[0.43-0.84] unit decrease	NR [NR] (imputed)	N
2374	chr2	234494715	234494716	rs114667609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114667609-G	NR	7E-123		0.1956	[0.18-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234494715	234494716	rs114667609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114667609-G	NR	2E-82		0.1749	[0.16-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234495741	234495742	rs17864661	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.1	UGT1A8	rs17864661-?	NR	7E-6	(xanthurenate)	0.33921033	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
2374	chr2	234502120	234502121	rs13394720	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	2q37.1	intergenic	rs13394720-?	NR	5E-7	(progression)			Illumina [NR]	N
2374	chr2	234502126	234502127	rs75528846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs75528846-A	NR	3E-70		0.1224	[0.11-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234502126	234502127	rs75528846	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs75528846-A	NR	4E-53		0.1155	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234508962	234508963	rs2741012	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A, UGT1A12P, UGT1A11P	rs2741012-?	0.2139	2E-9		0.07022795	[NR] unit increase	Illumina [5954294] (imputed)	N
2374	chr2	234518010	234518011	rs2741027	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	intergenic	rs2741027-A	0.177	1E-9		0.102	[0.071-0.133] mg/dL increase	Illumina [622468]	N
2374	chr2	234529642	234529643	rs6431558	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6431558-?	NR	6E-11				Affymetrix [NR] (imputed)	N
2374	chr2	234529642	234529643	rs6431558	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6431558-?	NR	6E-11				Affymetrix [NR] (imputed)	N
2374	chr2	234536636	234536637	rs1377460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1377460-G	NR	1E-369		0.1234	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234536636	234536637	rs1377460	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs1377460-G	NR	5E-236		0.1072	[0.1-0.11] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234545293	234545294	rs11683356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11683356-A	NR	5E-1329		0.5172	[0.5-0.53] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234545293	234545294	rs11683356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11683356-A	NR	3E-777		0.4139	[0.4-0.43] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234545791	234545792	rs144759885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs144759885-A	NR	2E-33		0.4967	[0.42-0.58] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234545791	234545792	rs144759885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs144759885-A	NR	9E-21		0.4061	[0.32-0.49] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234551412	234551413	rs7569014	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.1	UGT1A, UGT1A8	rs7569014-?		3E-7				Illumina [4322238] (imputed)	N
2374	chr2	234553313	234553314	rs2602372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs2602372-C	NR	2E-1179		0.5345	[0.52-0.55] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234553313	234553314	rs2602372	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs2602372-C	NR	2E-727		0.4395	[0.42-0.45] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234560130	234560131	rs188392327	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		2q37.1	UGT1A8, UGT1A10	rs188392327-A	0.002	2E-6	(liability model)	0.99	[0.58-1.4] unit increase	NR [19725427] (imputed)	N
2374	chr2	234563064	234563065	rs114346341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114346341-G	NR	2E-1074		0.5036	[0.49-0.52] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234563064	234563065	rs114346341	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114346341-G	NR	1E-657		0.4129	[0.4-0.43] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234565282	234565283	rs11892031	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	2q37.1	UGT1A	rs11892031-A	0.92	1E-7		1.17	[1.11-1.25]	Illumina [462190]	N
2374	chr2	234565282	234565283	rs11892031	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	2q37.1	UGT1A	rs11892031-?	0.92	1E-7		1.19	[1.12-1.27]	Illumina [589299]	N
2374	chr2	234566417	234566418	rs7571337	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7571337-?	NR	2E-13				Affymetrix [NR] (imputed)	N
2374	chr2	234566417	234566418	rs7571337	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7571337-?	NR	2E-13				Affymetrix [NR] (imputed)	N
2374	chr2	234567915	234567916	rs1112310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1112310-T	NR	4E-1889		0.2499	[0.24-0.26] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234567915	234567916	rs1112310	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs1112310-T	NR	8E-1343		0.2302	[0.22-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234577901	234577901	rs35555682	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs35555682-?	NR	6E-10				Affymetrix [NR] (imputed)	N
2374	chr2	234577901	234577901	rs35555682	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs35555682-?	NR	6E-10				Affymetrix [NR] (imputed)	N
2374	chr2	234579935	234579936	rs17863775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863775-G	NR	4E-73		0.2027	[0.18-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234579935	234579936	rs17863775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863775-G	NR	5E-52		0.1863	[0.16-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234580587	234580588	rs145084767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs145084767-A	NR	2E-56		0.5223	[0.46-0.59] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234580587	234580588	rs145084767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs145084767-A	NR	3E-34		0.4172	[0.35-0.48] unit increase	Affymetrix [9000000] (imputed)	N
2374	chr2	234580804	234580805	rs41264153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs41264153-A	NR	3E-72		0.2189	[0.19-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234580804	234580805	rs41264153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs41264153-A	NR	2E-60		0.2187	[0.19-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234580841	234580842	rs143487779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs143487779-T	NR	2E-17		0.2669	[0.21-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234580841	234580842	rs143487779	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs143487779-T	NR	6E-12		0.2399	[0.17-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
2374	chr2	234584323	234584324	rs2602381	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	2q37.1	UGT1A9	rs2602381-A	0.48	4E-6		1.42	[NR]	Illumina [835136]	N
2374	chr2	234586573	234586574	rs7571915	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7571915-?	NR	1E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234586573	234586574	rs7571915	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7571915-?	NR	1E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234587207	234587208	rs11692664	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11692664-?	NR	2E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234587207	234587208	rs11692664	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11692664-?	NR	2E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234587706	234587707	rs10202865	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10202865-?	NR	2E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234587706	234587707	rs10202865	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10202865-?	NR	2E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234587846	234587847	rs77070100	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs77070100-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234587846	234587847	rs77070100	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs77070100-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234587847	234587848	rs75444879	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs75444879-?	NR	1E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234587847	234587848	rs75444879	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs75444879-?	NR	1E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234587851	234587852	rs35984508	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs35984508-?	NR	1E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234587851	234587852	rs35984508	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs35984508-?	NR	1E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234589189	234589190	rs10197460	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10197460-?	NR	9E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234589189	234589190	rs10197460	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10197460-?	NR	9E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234589311	234589312	rs10167119	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10167119-?	NR	8E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234589311	234589312	rs10167119	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10167119-?	NR	8E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234590040	234590041	rs4530361	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs4530361-?	NR	8E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234590040	234590041	rs4530361	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs4530361-?	NR	8E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234590526	234590527	rs7586110	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7586110-?	NR	9E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234590526	234590527	rs7586110	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7586110-?	NR	9E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234590615	234590616	rs7577677	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7577677-?	NR	1E-22				Affymetrix [NR] (imputed)	N
2374	chr2	234590615	234590616	rs7577677	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7577677-?	NR	1E-22				Affymetrix [NR] (imputed)	N
2374	chr2	234591204	234591205	rs11692021	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11692021-?	NR	3E-22				Affymetrix [NR] (imputed)	N
2374	chr2	234591204	234591205	rs11692021	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11692021-?	NR	3E-22				Affymetrix [NR] (imputed)	N
2374	chr2	234592815	234592816	rs6724485	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6724485-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234592815	234592816	rs6724485	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6724485-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593040	234593041	rs4347832	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs4347832-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593040	234593041	rs4347832	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs4347832-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593116	234593117	rs4261716	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs4261716-?	NR	8E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593116	234593117	rs4261716	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs4261716-?	NR	8E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593602	234593602	rs747484438	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs747484438-?	NR	8E-48				Affymetrix [NR] (imputed)	N
2374	chr2	234593602	234593602	rs747484438	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs747484438-?	NR	8E-48				Affymetrix [NR] (imputed)	N
2374	chr2	234593705	234593706	rs13002774	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs13002774-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593705	234593706	rs13002774	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs13002774-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593930	234593931	rs4338954	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs4338954-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234593930	234593931	rs4338954	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs4338954-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234594082	234594083	rs4553819	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs4553819-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234594082	234594083	rs4553819	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs4553819-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234594268	234594269	rs11902131	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11902131-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234594268	234594269	rs11902131	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11902131-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595614	234595615	rs6753320	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6753320-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595614	234595615	rs6753320	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6753320-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595746	234595747	rs6736508	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6736508-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595746	234595747	rs6736508	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6736508-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595816	234595817	rs6753569	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6753569-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595816	234595817	rs6753569	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6753569-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595949	234595950	rs6736743	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6736743-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234595949	234595950	rs6736743	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6736743-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596367	234596368	rs10203266	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10203266-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596367	234596368	rs10203266	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10203266-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596835	234596836	rs10168155	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10168155-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596835	234596836	rs10168155	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10168155-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596864	234596865	rs10175809	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10175809-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596864	234596865	rs10175809	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10175809-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596987	234596988	rs10168333	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10168333-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234596987	234596988	rs10168333	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10168333-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234597086	234597087	rs10168416	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10168416-?	NR	7E-48				Affymetrix [NR] (imputed)	N
2374	chr2	234597086	234597087	rs10168416	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10168416-?	NR	7E-48				Affymetrix [NR] (imputed)	N
2374	chr2	234597320	234597321	rs10173355	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A10, UGT1A7, UGT1A8, UGT1A, UGT1A9, UGT1A13P, UGT1	rs10173355-?	0.2675	5E-16		0.088006854	[NR] unit increase	Illumina [5954294] (imputed)	N
2374	chr2	234597482	234597483	rs11680450	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11680450-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234597482	234597483	rs11680450	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11680450-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234597666	234597667	rs10171367	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10171367-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234597666	234597667	rs10171367	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10171367-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234597824	234597825	rs10179094	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10179094-?	NR	7E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234597824	234597825	rs10179094	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10179094-?	NR	7E-23				Affymetrix [NR] (imputed)	N
2374	chr2	234598990	234598991	rs7563561	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7563561-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234598990	234598991	rs7563561	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7563561-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599088	234599089	rs7608175	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7608175-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599088	234599089	rs7608175	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7608175-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599295	234599296	rs45615240	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs45615240-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599295	234599296	rs45615240	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs45615240-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599940	234599941	rs12623271	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs12623271-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234599940	234599941	rs12623271	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs12623271-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234600273	234600274	rs10445704	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10445704-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234600273	234600274	rs10445704	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10445704-?	NR	5E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234600998	234600999	rs13015720	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs13015720-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234600998	234600999	rs13015720	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs13015720-?	NR	6E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234601668	234601669	rs6759892	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6759892-?	NR	4E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234601668	234601669	rs6759892	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6759892-?	NR	4E-21				Affymetrix [NR] (imputed)	N
2374	chr2	234601964	234601965	rs1105880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q37.1		rs1105880-G	NR	5E-17		0.0726	[0.056-0.09] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
2374	chr2	234601964	234601965	rs1105880	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs1105880-?	NR	2E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234601964	234601965	rs1105880	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs1105880-?	NR	2E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234602190	234602191	rs2070959	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs2070959-?	NR	1E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234602190	234602191	rs2070959	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs2070959-?	NR	1E-47				Affymetrix [NR] (imputed)	N
2374	chr2	234602190	234602191	rs2070959	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	UGT1A6	rs2070959-G	0.278	2E-14		0.127	[0.096-0.158] mg/dL increase	Illumina [622468]	N
2374	chr2	234602190	234602191	rs2070959	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	2q37.1	UGT1A6	rs2070959-?		9E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [43000000] (imputed)	N
2374	chr2	234602201	234602202	rs1105879	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs1105879-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234602201	234602202	rs1105879	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs1105879-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234602905	234602906	rs7592624	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7592624-?	NR	9E-7				Affymetrix [NR] (imputed)	N
2374	chr2	234604229	234604230	rs28899170	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs28899170-?	NR	2E-58				Affymetrix [NR] (imputed)	N
2374	chr2	234604229	234604230	rs28899170	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs28899170-?	NR	2E-58				Affymetrix [NR] (imputed)	N
2374	chr2	234604902	234604903	rs6751673	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6751673-?	NR	1E-8				Affymetrix [NR] (imputed)	N
2374	chr2	234604902	234604903	rs6751673	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6751673-?	NR	1E-8				Affymetrix [NR] (imputed)	N
2374	chr2	234605834	234605835	rs1604144	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	2q37.1	UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, AC114812.8	rs1604144-T	0.27488	6E-8		1.0959264	[1.06-1.13]	NR [NR] (imputed)	N
2374	chr2	234606160	234606161	rs11894379	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		UGT1A8	rs11894379-?	NR	2E-8	(female)	4.35624	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2374	chr2	234606161	234606162	rs6715829	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6715829-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234606161	234606162	rs6715829	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6715829-?	NR	3E-44				Affymetrix [NR] (imputed)	N
2374	chr2	234606161	234606162	rs6715829	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.1	UGT1A10, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs6715829-A	0.679178	3E-11	(thyroxine)	0.163	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
2374	chr2	234607393	234607394	rs12988520	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs12988520-?	NR	2E-7				Affymetrix [NR] (imputed)	N
2374	chr2	234607393	234607394	rs12988520	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	UGT1A6	rs12988520-C	0.47	5E-9		0.098	[0.067-0.129] mg/dL decrease	Illumina [622468]	N
2374	chr2	234611093	234611094	rs17863787	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs17863787-?	NR	2E-59				Affymetrix [NR] (imputed)	N
2374	chr2	234611093	234611094	rs17863787	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs17863787-?	NR	2E-59				Affymetrix [NR] (imputed)	N
2374	chr2	234611093	234611094	rs17863787	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	UGT1A6	rs17863787-G	0.263	1E-17		0.142	[0.11-0.17] mg/dL increase	Illumina [622468]	N
2374	chr2	234611093	234611094	rs17863787	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs17863787-G	0.306	3E-12	(Nuclear receptor subfamily 1 group D member 2, NR1D2.12885.42.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
2374	chr2	234611093	234611094	rs17863787	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A7, UGT1A9, UGT1A, UGT1A6, UGT1A8, UGT1A10, UGT1A13P, UGT1, UGT1A5	rs17863787-?	0.2873	1E-22		0.1023267	[NR] unit increase	Illumina [5954294] (imputed)	N
2374	chr2	234612453	234612453	rs773965339	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs773965339-?	NR	8E-55				Affymetrix [NR] (imputed)	N
2374	chr2	234612453	234612453	rs773965339	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs773965339-?	NR	8E-55				Affymetrix [NR] (imputed)	N
2374	chr2	234612538	234612539	rs7567229	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q37.1	UGT1A6	rs7567229-A	0.3668	4E-11		0.0189	[0.013-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2374	chr2	234613706	234613707	rs10180090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q37.1		rs10180090-A	NR	1E-9		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2375	chr2	234619421	234619422	rs28898590	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q37.1	NR	rs28898590-G	0.933569	5E-11		0.0114664	[0.0082-0.0148] unit increase	Affymetrix [16582909] (imputed)	N
2375	chr2	234619421	234619422	rs28898590	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q37.1	NR	rs28898590-G	0.933569	7E-8		0.0104281	[0.0068-0.0141] unit increase	Affymetrix [16582965] (imputed)	N
2375	chr2	234621786	234621787	rs3755322	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	2q37.1		rs3755322-G	0.083	6E-12		0.104	[0.075-0.133] unit increase	Affymetrix [812428]	N
2375	chr2	234621786	234621787	rs3755322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	2q37.1	NR	rs3755322-G	NR	7E-32		0.0508	[0.042-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234621786	234621787	rs3755322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs3755322-G	NR	2E-134		0.1042	[0.096-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234621786	234621787	rs3755322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	2q37.1	NR	rs3755322-G	NR	1E-15		0.0356	[0.027-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234621786	234621787	rs3755322	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs3755322-G	NR	4E-134		0.113	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234622378	234622379	rs2012736	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	2q37.1		rs2012736-C	0.919186	1E-40		0.048	[0.04-0.056] unit decrease	NR [7250403] (imputed)	N
2375	chr2	234622378	234622379	rs2012736	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	2q37.1	NR	rs2012736-C	0.917557	5E-19		0.0481941	[0.037-0.059] unit increase	Affymetrix [16577313] (imputed)	N
2375	chr2	234623897	234623898	rs74669452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	2q37.1	NR	rs74669452-C	NR	2E-9		0.0569	[0.038-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234623897	234623898	rs74669452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs74669452-C	NR	1E-10		0.0652	[0.045-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234625296	234625297	rs6744284	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Bilirubin (z,z) levels	291 European ancestry individuals	NA	2q37.1		rs6744284-T	0.3241	1E-10		0.1437	unit increase	Illumina [7049691] (imputed)	N
2375	chr2	234625621	234625622	rs1875263	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A, UGT1A6, UGT1A5, UGT1A10, UGT1A8, UGT1A7, UGT1A13P, UGT1, UGT1A4, UGT1A9	rs1875263-?	0.4337	7E-12		0.06651771	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234627047	234627048	rs3732220	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	2q37.1		rs3732220-?	NR	1E-39		0.0478406	[0.041-0.055] unit decrease	NR [6912294] (imputed)	N
2375	chr2	234627303	234627304	rs3732218	32555152	Smith RL	2020-06-19	Transl Psychiatry	Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients-a genome-wide association study adjusting for smoking habits.	N-desmethylclozapine concentration in schizophrenia	3,473 European ancestry individuals	NA	2q37.1	UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT1A10	rs3732218-A	NR	7E-9		0.095	[0.064-0.126] unit increase	Illumina [up to 6200000] (imputed)	N
2375	chr2	234627303	234627304	rs3732218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	2q37.1	NR	rs3732218-G	0.918354	3E-8		0.0252069	[0.016-0.034] unit increase	Affymetrix [16585745] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	2q37.1	NR	rs2011425-G	0.07939	1E-37		0.046356	[0.039-0.053] unit decrease	Affymetrix [16668957] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	2q37.1	NR	rs2011425-T	0.920437	3E-26		0.0249772	[0.02-0.03] unit increase	Affymetrix [16578495] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q37.1	NR	rs2011425-T	0.920604	7E-11		0.0334892	[0.023-0.044] unit increase	Affymetrix [16580851] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	2q37.1	NR	rs2011425-T	0.920526	9E-25		0.0376561	[0.03-0.045] unit increase	Affymetrix [16583148] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	2q37.1	NR	rs2011425-T	0.920385	6E-20		0.0502524	[0.039-0.061] unit increase	Affymetrix [16577424] (imputed)	N
2375	chr2	234627607	234627608	rs2011425	30922102	Pardinas AF	2019-03-29	Am J Psychiatry	Pharmacogenomic Variants and Drug Interactions Identified Through the Genetic Analysis of Clozapine Metabolism.	Plasma norclozapine levels in treatment-resistant schizophrenia	2,989 European ancestry individuals	NA	2q37.1	UGT1A4	rs2011425-G	0.0864838	8E-9			decrease	Illumina [~ 7500000] (imputed)	N
2375	chr2	234628678	234628679	rs13401281	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs13401281-?	NR	7E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234628678	234628679	rs13401281	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs13401281-?	NR	7E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234628678	234628679	rs13401281	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	NR	rs13401281-?	NR	1E-718		0.3858	[0.37-0.4] unit increase novel	Illumina [6108953] (imputed)	N
2375	chr2	234633651	234633652	rs112132688	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs112132688-?	NR	1E-53				Affymetrix [NR] (imputed)	N
2375	chr2	234633651	234633652	rs112132688	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs112132688-?	NR	1E-53				Affymetrix [NR] (imputed)	N
2375	chr2	234637788	234637789	rs28898617	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	NR	rs28898617-?	NR	1E-10		0.06979	[0.049-0.091] unit increase novel	Illumina [6108953] (imputed)	N
2375	chr2	234638005	234638006	rs17868336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.1	NR	rs17868336-G	NR	1E-11		0.0373	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234638005	234638006	rs17868336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17868336-G	NR	4E-1302		0.4222	[0.41-0.43] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234638005	234638006	rs17868336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	2q37.1	NR	rs17868336-G	NR	4E-10		0.0343	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234638005	234638006	rs17868336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17868336-G	NR	2E-711		0.3498	[0.34-0.36] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234638005	234638006	rs17868336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q37.1	NR	rs17868336-G	NR	5E-12		0.038	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234639309	234639310	rs11891311	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs11891311-?	0.12	1E-41	(Direct bilirubin)	0.142	[0.12-0.16] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234639655	234639656	rs17868337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17868337-A	NR	3E-178		0.2259	[0.21-0.24] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234639655	234639656	rs17868337	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17868337-A	NR	9E-135		0.2154	[0.2-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234641603	234641604	rs75520741	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	NR	rs75520741-?	NR	3E-690		0.3181	[0.31-0.33] unit increase novel	Illumina [6108953] (imputed)	N
2375	chr2	234642014	234642015	rs13410335	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs13410335-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234642014	234642015	rs13410335	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs13410335-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234642837	234642838	rs7567468	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CMPK1	5,365 Icelandic ancestry individuals	NA	2q37.1		rs7567468-T	0.2958	6E-12		0.14373	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
2375	chr2	234642837	234642838	rs7567468	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7567468-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234642837	234642838	rs7567468	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7567468-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234643736	234643737	rs4477910	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A9, UGT1A5, UGT1A4, UGT1A6, UGT1A, UGT1A8, UGT1A10, UGT1A7, UGT1A3, RPL17P11, RPL1, DNAJB3	rs4477910-?	0.4787	5E-16		0.07985459	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234645185	234645186	rs7564935	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7564935-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234645185	234645186	rs7564935	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7564935-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234645185	234645186	rs7564935	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Bilirubin levels	14,126 African ancestry individuals	NA	2q37.1		rs7564935-G	0.557	9E-18	(random effects model)	0.500038	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
2375	chr2	234647316	234647317	rs6722076	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6722076-?	NR	4E-55				Affymetrix [NR] (imputed)	N
2375	chr2	234647316	234647317	rs6722076	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6722076-?	NR	4E-55				Affymetrix [NR] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYK2	5,361 Icelandic ancestry individuals	NA	2q37.1		rs17862875-A	0.2956	1E-14		0.160357	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	2q37.1		rs17862875-A	0.2956	2E-12		0.145287	[0.1-0.19] unit decrease	Illumina [7506463] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCTS1	5,364 Icelandic ancestry individuals	NA	2q37.1		rs17862875-A	0.2956	1E-12		0.148222	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs17862875-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs17862875-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234649301	234649302	rs17862875	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs17862875-?	NR	6E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234650561	234650562	rs34352510	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs34352510-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234650561	234650562	rs34352510	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs34352510-?	NR	2E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234650561	234650562	rs34352510	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs34352510-?	NR	3E-10				Illumina [~ 5190000] (imputed)	N
2375	chr2	234651879	234651880	rs17863796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863796-C	NR	3E-14		0.0894	[0.066-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234651879	234651880	rs17863796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863796-C	NR	4E-16		0.1035	[0.079-0.128] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234652307	234652308	rs34622615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.1	NR	rs34622615-T	NR	6E-10		0.0428	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234652307	234652308	rs34622615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs34622615-T	NR	4E-1721		0.6083	[0.59-0.62] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234652307	234652308	rs34622615	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs34622615-T	NR	8E-1103		0.5086	[0.49-0.52] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234652716	234652717	rs17864701	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs17864701-?	NR	1E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234652716	234652717	rs17864701	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs17864701-?	NR	1E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234652716	234652717	rs17864701	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs17864701-?	NR	5E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234654448	234654449	rs11695484	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11695484-?	NR	1E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234654448	234654449	rs11695484	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11695484-?	NR	1E-56				Affymetrix [NR] (imputed)	N
2375	chr2	234654448	234654449	rs11695484	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs11695484-?	NR	3E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234655312	234655313	rs4663969	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A10, UGT1A, UGT1A7, UGT1A8, UGT1A4, UGT1A5, UGT1A6, UGT1A3, UGT1A9, DNAJB3, UGT1A2P	rs4663969-?	0.4651	4E-16		0.07697108	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234656639	234656640	rs11888459	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11888459-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234656639	234656640	rs11888459	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11888459-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234656639	234656640	rs11888459	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs11888459-?	NR	6E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234657511	234657512	rs17862876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17862876-T	NR	6E-768		0.5406	[0.52-0.56] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234657511	234657512	rs17862876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17862876-T	NR	3E-459		0.4368	[0.42-0.46] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234657876	234657877	rs10178992	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10178992-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234657876	234657877	rs10178992	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10178992-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234657876	234657877	rs10178992	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs10178992-?	NR	6E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234657982	234657983	rs10179091	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs10179091-?	NR	1E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234658115	234658116	rs7604115	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7604115-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234658115	234658116	rs7604115	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7604115-?	NR	1E-25				Affymetrix [NR] (imputed)	N
2375	chr2	234658115	234658116	rs7604115	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs7604115-?	NR	6E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234659060	234659061	rs2885296	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs2885296-?	NR	3E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234659060	234659061	rs2885296	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs2885296-?	NR	3E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234659060	234659061	rs2885296	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs2885296-?	NR	2E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234663648	234663649	rs10929301	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs10929301-?	NR	7E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234664059	234664060	rs11673726	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11673726-?	NR	9E-26				Affymetrix [NR] (imputed)	N
2375	chr2	234664059	234664060	rs11673726	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11673726-?	NR	9E-26				Affymetrix [NR] (imputed)	N
2375	chr2	234664059	234664060	rs11673726	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs11673726-?	NR	4E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234664353	234664354	rs6747843	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6747843-?	NR	3E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234664353	234664354	rs6747843	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6747843-?	NR	3E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234664353	234664354	rs6747843	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs6747843-?	NR	2E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234664586	234664588	rs35754645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	2q37.1		rs35754645-A	NR	3E-26677		0.702	[0.7-0.71] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2375	chr2	234664586	234664588	rs35754645	34117260	Chen G	2021-06-11	NPJ Genom Med	A UGT1A1 variant is associated with serum total bilirubin levels, which are causal for hypertension in African-ancestry individuals.	Total bilirubin levels	1,127 West African individuals	NA	2q37.1	UGT1A1	rs35754645-?	NR	3E-54		0.596	[0.52-0.67] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2375	chr2	234664586	234664588	rs35754645	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.1	UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs35754645-ATC	0.671442	5E-150	(bilirubin (E,Z or Z,E)*)	0.631	[0.58-0.68] unit decrease	Illumina [13039987] (imputed)	N
2375	chr2	234664586	234664588	rs35754645	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Liver disease biomarker	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	2q37.1	UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5, UGT1A4, UGT1A3	rs35754645-?	NR	1E-18	(Bilirubin)	0.44	[0.34-0.54] unit increase	Illumina [14948665] (imputed)	N
2375	chr2	234664586	234664588	rs35754645	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q37.1	UGT1A6	rs35754645-?	0.3516	3E-13		0.0199	[0.015-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2375	chr2	234664764	234664765	rs6714634	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6714634-?	NR	8E-58				Affymetrix [NR] (imputed)	N
2375	chr2	234664764	234664765	rs6714634	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6714634-?	NR	8E-58				Affymetrix [NR] (imputed)	N
2375	chr2	234664764	234664765	rs6714634	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs6714634-?	NR	2E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234665497	234665498	rs11568318	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	2q37.1	NR	rs11568318-C	0.93368	7E-19		0.0336663	[0.026-0.041] unit decrease	Affymetrix [15000001]	N
2375	chr2	234665497	234665498	rs11568318	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	2q37.1	UGT1A8	rs11568318-C	0.933755	7E-10		0.0257407	[0.018-0.034] unit decrease	Affymetrix [NR] (imputed)	N
2375	chr2	234665497	234665498	rs11568318	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q37.1	UGT1A8	rs11568318-C	0.933749	4E-12		0.0288504	[0.021-0.037] unit decrease	Affymetrix [NR] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs10929302-?	NR	1E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs10929302-?	NR	1E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.1	NR	rs10929302-A	NR	7E-11		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs10929302-A	NR	2E-22935		0.7487	[0.74-0.75] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs10929302-A	NR	9E-13050		0.6239	[0.62-0.63] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234665781	234665782	rs10929302	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Bilirubin levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	2q37.1	UGT1A6, UGT1A10, UGT1A9, UGT1A4, UGT1A5, UGT1A8, UGT1A3, UGT1A7	rs10929302-A	0.131	3E-64		0.273	[0.24-0.3] unit increase	Affymetrix [546738]	N
2375	chr2	234665781	234665782	rs10929302	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs10929302-?	NR	2E-9				Illumina [~ 5190000] (imputed)	N
2375	chr2	234665982	234665983	rs1976391	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2q37.1	UGT1A9, UGT1A10, AC114812.9, RPL17P11, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8	rs1976391-?	NR	4E-17	(biliverdin)	0.42	[NR] unit increase	Illumina [14760605] (imputed)	N
2375	chr2	234667581	234667582	rs3755319	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A10, UGT1A5, UGT1A7, UGT1A4, UGT1A3, UGT1A8, UGT1A, UGT1A9, UGT1A6, LOC100286922, UGT1A1	rs3755319-?	0.4532	9E-20		0.08879298	[NR] unit decrease	Illumina [5954294] (imputed)	N
2375	chr2	234668024	234668025	rs6723506	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	2q37.1	UGT1A1	rs6723506-G	0.027	5E-8		0.229	[0.2-0.26] unit increase	NR [NR] (imputed)	N
2375	chr2	234668569	234668570	rs887829	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAXIP1	5,368 Icelandic ancestry individuals	NA	2q37.1		rs887829-T	0.3199	2E-21		0.194778	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
2375	chr2	234668569	234668570	rs887829	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs887829-?	NR	5E-69				Affymetrix [NR] (imputed)	N
2375	chr2	234668569	234668570	rs887829	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs887829-?	NR	5E-69				Affymetrix [NR] (imputed)	N
2375	chr2	234668569	234668570	rs887829	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.1	UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-C	0.671039	4E-175	(bilirubin (Z,Z))	0.679	[0.63-0.73] unit decrease	Illumina [13039987] (imputed)	N
2375	chr2	234668569	234668570	rs887829	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.1	UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-C	0.671039	1E-11	(xanthurenate)	0.161	[0.11-0.21] unit decrease	Illumina [13039987] (imputed)	N
2375	chr2	234668569	234668570	rs887829	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs887829-?	NR	7E-12				Illumina [~ 5190000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A7, UGT1A6, UGT1A4, UGT1A, UGT1A9, UGT1A5, UGT1A3, UGT1A10, UGT1A8, UGT, LOC100286922, UGT1A1	rs887829-T	0.3656	7E-31		0.11449965	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.34	3E-168	(biliverdin)	0.113	[0.11-0.12] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.33	4E-95	(bilirubin (E,E))	0.128	[0.12-0.14] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.33	3E-114	(X-11793--oxidized bilirubin)	0.093	[0.085-0.101] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.33	2E-152	(bilirubin (Z,Z))	0.168	[0.16-0.18] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.33	2E-140	(X-11530)	0.112	[0.1-0.12] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs887829-T	0.32	2E-56	(bilirubin (E,Z or Z,E))	0.081	[0.071-0.091] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	2q37.1	UGT1A	rs887829-T	0.44	8E-23	(Biliverdin)	0.32	[NR] unit increase	Affymetrix [2341704] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	2q37.1	UGT1A	rs887829-T	0.44	6E-13	(Bilirubin (Z,Z))	0.34	[NR] unit increase	Affymetrix [2341704] (imputed)	N
2375	chr2	234668569	234668570	rs887829	24625756	Yu B	2014-03-13	PLoS Genet	Genetic determinants influencing human serum metabolome among African Americans.	Serum metabolite levels	1,260 African American individuals	NA	2q37.1	UGT1A	rs887829-T	0.44	1E-17	(Bilirubin (E,E))	0.32	[NR] unit increase	Affymetrix [2341704] (imputed)	N
2375	chr2	234668569	234668570	rs887829	23642732	Cox AJ	2013-04-19	Atherosclerosis	Association of SNPs in the UGT1A gene cluster with total bilirubin and mortality in the Diabetes Heart Study.	Bilirubin levels	1,180 European ancestry individuals from ~475 families		2q37.1	UGT1A	rs887829-T	0.312	9E-20				Affymetrix, Illumina [371951]	N
2375	chr2	234668569	234668570	rs887829	23281178	Hong MG	2013-03-01	Hum Mutat	A genome-wide assessment of variability in human serum metabolism.	Metabolite levels	214 European ancestry prostate cancer cases, 188 European ancestry controls	489 European ancestry prostate cancer cases	2q37.1	UGT1A8	rs887829-T	NR	9E-25	(Bilirubin)			Affymetrix [333722]	N
2375	chr2	234668569	234668570	rs887829	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-?	NR	6E-47	(biliverdin)	0.1023	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234668569	234668570	rs887829	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-?	NR	3E-26	(X-11793)	0.07591	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234668569	234668570	rs887829	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-?	NR	3E-24	(bilirubinEE)	0.0939	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234668569	234668570	rs887829	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs887829-?	NR	1E-46	(bilirubinZZ)	0.1551	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234668569	234668570	rs887829	22558097	Milton JN	2012-04-27	PLoS One	A genome-wide association study of total bilirubin and cholelithiasis risk in sickle cell anemia.	Cholelithiasis-related traits in sickle cell anemia	905 African American cases	2,152 African American cases	2q37.1	UGT1A1, UGT1A10	rs887829-A	0.45	5E-25		0.19	[NR] unit increase	Illumina [569615]	N
2375	chr2	234668569	234668570	rs887829	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	2q37.1	UGT1A1	rs887829-T	0.45	2E-22		0.226	[0.183-0.270] unit increase	Affymetrix [808465]	N
2375	chr2	234668569	234668570	rs887829	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	2q37.1	UGT1A	rs887829-T	0.337	3E-74	(SM-4 + 74 other traits)	0.293	[NR] unit increase	Affymetrix, Illumina [534665]	N
2375	chr2	234668569	234668570	rs887829	19419973	Sanna S	2009-05-06	Hum Mol Genet	Common variants in the SLCO1B3 locus are associated with bilirubin levels and unconjugated hyperbilirubinemia.	Bilirubin levels	4,300 Sardinian individuals	1,860 Sardinian individuals, 832 Old Order Amish individuals	2q37.1	UGT1A1	rs887829-T	0.30	1E-69		0.57	[0.50-0.63] s.d. decrease	Affymetrix [362129]	N
2375	chr2	234668879	234668879	rs34983651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	2q37.1		rs34983651-CAT	NR	2E-14		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs34983651-?	NR	1E-67				Affymetrix [NR] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs34983651-?	NR	1E-67				Affymetrix [NR] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs34983651-CAT	0.305	2E-30	(UDP-glucuronosyltransferase 1-6, UGT1A6.7891.45.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs34983651-CAT	0.305	2E-14	(Testis-specific chromodomain protein Y 1, CDY1.7097.8.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs34983651-CAT	0.305	2E-102	(Angiopoietin-related protein 1, ANGPTL1.9092.33.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs34983651-CAT	0.305	1E-16	(Protein-tyrosine kinase 6, PTK6.3832.51.1)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
2375	chr2	234668879	234668879	rs34983651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	UGT1A6	rs34983651-CAT	0.305	1E-13	(Retinol dehydrogenase 16, RDH16.12881.17.3)	0.2	[0.14-0.26] unit increase	Affymetrix [10572788] (imputed)	N
2375	chr2	234669143	234669144	rs4148323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs4148323-A	NR	2E-11		0.2989	[0.21-0.39] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234669143	234669144	rs4148323	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs4148323-?	0.20	7E-30	(Direct bilirubin)	0.09	[0.074-0.106] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234669143	234669144	rs4148323	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs4148323-?	0.20	5E-69	(Total bilirubin)	0.109	[0.097-0.121] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234669143	234669144	rs4148323	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs4148323-?	0.20	2E-62	(Indirect bilirubin)	0.121	[0.11-0.13] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234669143	234669144	rs4148323	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1	UGT1A1	rs4148323-?	0.189	3E-139	Conditional on rs11891311	0.14	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
2375	chr2	234671461	234671462	rs28946889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	2q37.1		rs28946889-T	0.518746	4E-1352		0.291696	[0.28-0.3] unit decrease	Illumina [13476323] (imputed)	N
2375	chr2	234671461	234671462	rs28946889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q37.1		rs28946889-T	0.519515603	1E-9		0.09468132	[0.064-0.125] unit decrease	Illumina [13429768] (imputed)	N
2375	chr2	234671461	234671462	rs28946889	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs28946889-?	NR	3E-1255		0.3275	[0.32-0.34] unit decrease novel	Illumina [6108953] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UGT1A6	5,367 Icelandic ancestry individuals	NA	2q37.1		rs6742078-T	0.3197	2E-36		0.25745	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CKAP4	5,367 Icelandic ancestry individuals	NA	2q37.1		rs6742078-T	0.3197	1E-19		0.185077	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6742078-?	NR	3E-69				Affymetrix [NR] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6742078-?	NR	3E-69				Affymetrix [NR] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs6742078-?	NR	4E-11				Illumina [~ 5190000] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs6742078-?	0.12	6E-40	(Direct bilirubin)	0.133	[0.11-0.15] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs6742078-?	0.12	2E-78	(Indirect bilirubin)	0.166	[0.15-0.18] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	23371916	Dai X	2013-01-31	Genet Epidemiol	A genome-wide association study for serum bilirubin levels and gene-environment interaction in a Chinese population.	Bilirubin levels	1,452 Han Chinese ancestry individuals	8,830 Han Chinese ancestry individuals	2q37.1	UGT1A1	rs6742078-?	0.12	1E-89	(Total bilirubin)	0.153	[0.14-0.17] unit increase	Affymetrix [658288] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs6742078-?	NR	6E-30	(X-11441)	0.08834	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234672638	234672639	rs6742078	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs6742078-?	NR	2E-38	(X-11530)	0.08613	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234672638	234672639	rs6742078	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs6742078-?	NR	1E-25	(X-11442)	0.08056	[NR] unit increase	Affymetrix [655658]	N
2375	chr2	234672638	234672639	rs6742078	22511988	Jylhava J	2012-04-12	PLoS One	A genome-wide association study identifies UGT1A1 as a regulator of serum cell-free DNA in young adults: The Cardiovascular Risk in Young Finns Study.	Circulating cell-free DNA	1,841 individuals	NA	2q37.1	UGT1A1	rs6742078-T	0.60	2E-23		0.3358	[0.27-0.40] ug/ml increase	Illumina [2543887] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	2q37.1	UGT1A1	rs6742078-?	0.122	1E-158		0.181	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
2375	chr2	234672638	234672639	rs6742078	19414484	Johnson AD	2009-05-04	Hum Mol Genet	Genome-wide association meta-analysis for total serum bilirubin levels.	Bilirubin levels	9,464 individuals	NA	2q37.1	UGT1A1	rs6742078-T	0.32	5E-324		0.23	[0.21-0.25] umol/l increase in log(tbil)	Affymetrix, Illumina [2555103] (imputed)	N
2375	chr2	234672721	234672722	rs4148324	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs4148324-?	NR	9E-11				Illumina [~ 5190000] (imputed)	N
2375	chr2	234672721	234672722	rs4148324	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs4148324-T	0.67	5E-117	(X-11442)	0.109	[0.099-0.119] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234672721	234672722	rs4148324	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.1	UGT1A1	rs4148324-T	0.67	2E-116	(X-11441)	0.109	[0.099-0.119] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2375	chr2	234673238	234673239	rs3771341	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs3771341-?	NR	2E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234673238	234673239	rs3771341	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs3771341-?	NR	2E-57				Affymetrix [NR] (imputed)	N
2375	chr2	234673238	234673239	rs3771341	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs3771341-?	NR	1E-10				Illumina [~ 5190000] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F3	5,368 Icelandic ancestry individuals	NA	2q37.1		rs4148325-T	0.3199	3E-23		0.199077	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2q37.1	RPL17P11, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT1A10, AC114812.9	rs4148325-?	NR	4E-12	(bilirubin (E,E))	0.36	[NR] unit increase	Illumina [14760605] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	UGT1A1	rs4148325-C	0.354	2E-19		0.149	[0.12-0.18] mg/dL increase	Illumina [622468]	N
2375	chr2	234673308	234673309	rs4148325	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs4148325-?	NR	1E-11				Illumina [~ 5190000] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A7, UGT1A, UGT1A9, UGT1A5, UGT1A10, UGT1A3, UGT1A1, UGT1A8, UGT1A6, UGT1A4, LOC100286922, MROH2A	rs4148325-?	0.3654	1E-30	rs4148324, rs3771341	0.113883175	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	25246029	DiStefano JK	2014-09-23	Acta Diabetol	Genome-wide analysis of hepatic lipid content in extreme obesity.	Bilirubin levels in extreme obesity	1,868 European ancestry cases	NA	2q37.1	UGT1A1	rs4148325-?	NR	5E-93				Illumina [605718]	N
2375	chr2	234673308	234673309	rs4148325	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.1	UGT1A8	rs4148325-?	NR	5E-9	(xanthurenate)	0.23389485	[0.16-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
2375	chr2	234673308	234673309	rs4148325	21646302	Bielinski SJ	2011-06-06	Mayo Clin Proc	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	UGT1A	rs4148325-?	0.33	5E-62		0.17	[0.15-0.19] mg/dL increase	Illumina [583129]	N
2375	chr2	234674251	234674252	rs4663971	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		UGT1A8	rs4663971-?	NR	9E-6	(male)	0.170402	[NR] unit increase	Affymetrix [NR] (imputed)	N
2375	chr2	234674475	234674476	rs929596	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	UGT1A1	rs929596-G	0.324	8E-15		0.136	[0.1-0.17] mg/dL increase	Illumina [622468]	N
2375	chr2	234674475	234674476	rs929596	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Bilirubin levels in tenofovir-treated HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	2q37.1	NR	rs929596-?	NR	1E-10				Illumina [~ 5190000] (imputed)	N
2375	chr2	234674475	234674476	rs929596	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	UGT1A5, UGT1A6, UGT1A, UGT1A10, UGT1A3, UGT1A7, UGT1A9, UGT1A4, UGT1A1, UGT1A8, LOC100286922, MROH2A	rs929596-?	0.3215	3E-24		0.10258645	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234677385	234677386	rs6431630	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.1	NR	rs6431630-A	0.109	2E-27	(UDP-glucuronosyltransferase 1-6, UGT1A6.7891.45.3)	0.43	[0.35-0.51] unit increase	Affymetrix [10572788] (imputed)	N
2375	chr2	234677385	234677386	rs6431630	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	NR	rs6431630-?	NR	3E-81		0.1317	[0.12-0.15] unit decrease novel	Illumina [6108953] (imputed)	N
2375	chr2	234678667	234678668	rs12474441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs12474441-G	NR	3E-98		0.1873	[0.17-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234678667	234678668	rs12474441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs12474441-G	NR	1E-76		0.1801	[0.16-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UGT1A6	5,367 Icelandic ancestry individuals	NA	2q37.1		rs11563251-T	0.09848	2E-23		0.321279	[0.26-0.38] unit increase	Illumina [7506463] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and LDL-C (pairwise)	263,726 European ancestry individuals, 10,061 East Asian, South Asian and African American ancestry individuals	NA	2q37.1	NR	rs11563251-C	0.8817	7E-11				Affymetrix, Illumina [2331072] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	2q37.1	UGT1A1, UGT1A10, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9	rs11563251-?	NR	8E-13		0.0288	[0.022-0.036] unit increase	Affymetrix [5701386] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	2q37.1	UGT1A1	rs11563251-T	0.125	4E-8	(Trans-ethnic initial)	0.0345	[0.022-0.047] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	2q37.1	UGT1A1	rs11563251-T	0.12	5E-8		0.034	[NR] unit increase	NR [NR] (imputed)	N
2375	chr2	234679383	234679384	rs11563251	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	2q37.1	UGT1A1	rs11563251-T	0.12	1E-9		0.037	[NR] unit increase	NR [NR] (imputed)	N
2375	chr2	234679548	234679549	rs35203651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	2q37.1		rs35203651-C	NR	1E-8		0.0191	[0.013-0.026] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
2375	chr2	234681543	234681544	rs1042640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1042640-C	NR	9E-749		0.174	[0.17-0.18] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234681543	234681544	rs1042640	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs1042640-C	NR	2E-475		0.1513	[0.15-0.16] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234681644	234681645	rs8330	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	2q37.1	NR	rs8330-?	NR	4E-20		0.06445	[0.051-0.078] unit decrease novel	Illumina [6108953] (imputed)	N
2375	chr2	234685649	234685650	rs115836766	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs115836766-A	NR	6E-178		0.169	[0.16-0.18] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234685649	234685650	rs115836766	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs115836766-A	NR	1E-125		0.1517	[0.14-0.16] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234687117	234687118	rs34670649	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs34670649-T	NR	1E-43		0.4454	[0.38-0.51] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234687117	234687118	rs34670649	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs34670649-T	NR	3E-28		0.4036	[0.33-0.48] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234689089	234689090	rs4663335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.1	NR	rs4663335-A	NR	7E-10		0.0203	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234689089	234689090	rs4663335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs4663335-A	NR	6E-925		0.2133	[0.21-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234689089	234689090	rs4663335	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs4663335-A	NR	3E-527		0.1765	[0.17-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234689542	234689543	rs6722064	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs6722064-?	NR	1E-23				Affymetrix [NR] (imputed)	N
2375	chr2	234689542	234689543	rs6722064	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs6722064-?	NR	1E-23				Affymetrix [NR] (imputed)	N
2375	chr2	234692616	234692617	rs11690786	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs11690786-?	NR	7E-24				Affymetrix [NR] (imputed)	N
2375	chr2	234692616	234692617	rs11690786	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs11690786-?	NR	7E-24				Affymetrix [NR] (imputed)	N
2375	chr2	234694726	234694727	rs7581102	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs7581102-?	NR	6E-22				Affymetrix [NR] (imputed)	N
2375	chr2	234694726	234694727	rs7581102	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs7581102-?	NR	6E-22				Affymetrix [NR] (imputed)	N
2375	chr2	234696130	234696131	rs12995326	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs12995326-?	NR	3E-22				Affymetrix [NR] (imputed)	N
2375	chr2	234696130	234696131	rs12995326	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs12995326-?	NR	3E-22				Affymetrix [NR] (imputed)	N
2375	chr2	234698789	234698790	rs2361502	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs2361502-?	NR	6E-15				Affymetrix [NR] (imputed)	N
2375	chr2	234698789	234698790	rs2361502	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs2361502-?	NR	6E-15				Affymetrix [NR] (imputed)	N
2375	chr2	234698789	234698790	rs2361502	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	2q37.1	MROH2A	rs2361502-C	0.282	4E-8		0.096	[0.063-0.129] mg/dL increase	Illumina [622468]	N
2375	chr2	234698789	234698790	rs2361502	25884002	Moore CB	2015-01-09	Open Forum Infect Dis	Phenome-wide Association Study Relating Pretreatment Laboratory Parameters With Human Genetic Variants in AIDS Clinical Trials Group Protocols.	Total bilirubin levels in HIV-1 infection	2,547 individuals	NA	2q37.1	MROH2A, UGT1A9, HJURP	rs2361502-?	0.3076	3E-6		0.048421808	[NR] unit increase	Illumina [5954294] (imputed)	N
2375	chr2	234698789	234698790	rs2361502	21646302	Bielinski SJ	2011-06-06	Mayo Clin Proc	Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels.	Bilirubin levels	6,307 European ancestry individuals	NA	2q37.1	LOC339766	rs2361502-?	0.29	7E-23		0.098	[0.08-0.12] mg/dL increase	Illumina [583129]	N
2375	chr2	234698975	234698976	rs12986677	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total bilirubin levels x insomnia interaction	101,922 cases with insomnia, 84,871 controls with insomnia	NA	2q37.1		rs12986677-?	NR	2E-14				Affymetrix [NR] (imputed)	N
2375	chr2	234698975	234698976	rs12986677	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Direct bilirubin levels x insomnia interaction	85,121 cases with insomnia, 74,733 controls without insomnia	NA	2q37.1		rs12986677-?	NR	2E-14				Affymetrix [NR] (imputed)	N
2375	chr2	234699365	234699366	rs62191951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62191951-C	NR	5E-127		0.1217	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234699365	234699366	rs62191951	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62191951-C	NR	9E-90		0.1097	[0.099-0.12] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234700577	234700578	rs10170160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs10170160-C	NR	9E-319		0.0941	[0.089-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234700577	234700578	rs10170160	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs10170160-C	NR	1E-200		0.0808	[0.076-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234701821	234701822	rs6755193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6755193-G	NR	2E-85		0.0497	[0.045-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234701821	234701822	rs6755193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs6755193-G	NR	1E-61		0.0455	[0.04-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234704075	234704076	rs17864714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17864714-A	NR	3E-344		0.246	[0.23-0.26] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234704075	234704076	rs17864714	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17864714-A	NR	5E-221		0.2096	[0.2-0.22] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234704606	234704607	rs1076454	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	2q37.1		rs1076454-?	NR	3E-8				Affymetrix [NR] (imputed)	N
2375	chr2	234704689	234704690	rs759173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs759173-C	NR	2E-58		0.0522	[0.046-0.058] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234704689	234704690	rs759173	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs759173-C	NR	4E-38		0.0453	[0.038-0.052] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234708427	234708428	rs13013882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13013882-A	NR	1E-447		0.1377	[0.13-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234708427	234708428	rs13013882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs13013882-A	NR	6E-288		0.1187	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234708823	234708824	rs55686299	31801373	Choi Y	2019-12-05	Arterioscler Thromb Vasc Biol	Causal Associations Between Serum Bilirubin Levels and Decreased Stroke Risk: A Two-Sample Mendelian Randomization Study.	Bilirubin levels	25,406 Korean ancestry individuals	NA	2q37.1	MROH2A	rs55686299-G	0.065	5E-8		0.048	[0.03-0.066] unit increase	NR [NR] (imputed)	N
2375	chr2	234708867	234708868	rs11563246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11563246-C	NR	3E-100		0.1098	[0.1-0.12] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234708867	234708868	rs11563246	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11563246-C	NR	4E-63		0.0931	[0.082-0.104] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234713680	234713681	rs79208193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs79208193-T	NR	2E-239		0.1856	[0.17-0.2] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234713680	234713681	rs79208193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs79208193-T	NR	1E-140		0.1558	[0.14-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234717447	234717448	rs12053445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs12053445-G	NR	8E-174		0.067	[0.062-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234717447	234717448	rs12053445	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs12053445-G	NR	3E-111		0.0578	[0.053-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234719228	234719229	rs76895192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs76895192-T	NR	5E-30		0.1405	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234719228	234719229	rs76895192	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs76895192-T	NR	2E-25		0.1402	[0.11-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234723480	234723481	rs17868358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17868358-T	NR	7E-45		0.1215	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234723480	234723481	rs17868358	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17868358-T	NR	2E-23		0.0941	[0.076-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234724062	234724063	rs139435625	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	2q37.1	Intergenic	rs139435625-G	NR	4E-6	(women)	0.164324	[0.094-0.234] unit decrease	Illumina [13520550] (imputed)	N
2375	chr2	234728425	234728426	rs28626554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs28626554-A	NR	6E-18		0.0685	[0.053-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234728425	234728426	rs28626554	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs28626554-A	NR	1E-11		0.0585	[0.042-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234729985	234729986	rs111809359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs111809359-A	NR	2E-17		0.0322	[0.025-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234729985	234729986	rs111809359	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs111809359-A	NR	4E-10		0.0258	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234730103	234730104	rs17863818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863818-G	NR	1E-135		0.1321	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234730103	234730104	rs17863818	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863818-G	NR	3E-84		0.1112	[0.1-0.12] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234732815	234732816	rs7606893	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic systolic blood pressure minus ambulatory systolic blood pressure)	206 Finnish ancestry individuals	NA	2q37.1	MROH2A	rs7606893-A	0.5	3E-6		3.6	[2.03-5.17] unit increase	Illumina [629414]	N
2375	chr2	234739869	234739870	rs213546	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	2q37.1	DNAJB3, HJURP, LOC100286922, MROH2A, MSL3P1, SPP2, TRPM8, UGT1A1, UGT1A3, UGT1A4, UGT1A5, UGT1A6, UGT1A7, UGT1A8, UGT1A9, UGT1A10, USP40	rs213546-?	NR	7E-6				Illumina [9143600] (imputed)	N
2375	chr2	234740135	234740136	rs879665	29251981	Weafer J	2017-12-01	Exp Clin Psychopharmacol	Hierarchical investigation of genetic influences on response inhibition in healthy young adults.	Inhibitory control	934 European ancestry individuals	NA	2q37.1	MROH2A	rs879665-A	0.142	5E-7				Illumina [4873750] (imputed)	N
2375	chr2	234741400	234741401	rs2270854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs2270854-T	NR	3E-327		0.192	[0.18-0.2] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234741400	234741401	rs2270854	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs2270854-T	NR	8E-204		0.1617	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234748813	234748814	rs965835	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	2q37.1		rs965835-?	NR	4E-6				Illumina [7401356] (imputed)	N
2375	chr2	234748943	234748944	rs3771338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs3771338-T	NR	6E-35		0.0568	[0.048-0.066] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234748943	234748944	rs3771338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs3771338-T	NR	6E-22		0.0479	[0.038-0.058] unit increase	Affymetrix [9000000] (imputed)	N
2375	chr2	234749782	234749783	rs17863822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863822-G	NR	2E-43		0.0659	[0.056-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
2375	chr2	234749782	234749783	rs17863822	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863822-G	NR	4E-28		0.0568	[0.047-0.067] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234750427	234750428	rs140912561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs140912561-T	NR	1E-9		0.2134	[0.14-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234752862	234752863	rs140874442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs140874442-T	NR	1E-18		0.1892	[0.15-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234752862	234752863	rs140874442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs140874442-T	NR	2E-12		0.166	[0.12-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234756640	234756641	rs78712204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs78712204-A	NR	3E-113		0.2991	[0.27-0.32] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234756640	234756641	rs78712204	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs78712204-A	NR	5E-69		0.2449	[0.22-0.27] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234756810	234756811	rs566529	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	2q37.1	HJURP, TRPM8	rs566529-?	0.85	3E-9		1.0638298	[1.04-1.08]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
2376	chr2	234758538	234758539	rs685139	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.1	TRPM8	rs685139-?	NR	5E-6	(PC 32:1)	0.2617174	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2376	chr2	234760728	234760729	rs79566441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs79566441-T	NR	2E-77		0.1677	[0.15-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234760728	234760729	rs79566441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs79566441-T	NR	1E-53		0.152	[0.13-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234763136	234763137	rs2302154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs2302154-C	NR	2E-42		0.0677	[0.058-0.077] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234763136	234763137	rs2302154	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs2302154-C	NR	5E-26		0.0563	[0.046-0.067] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234773728	234773729	rs6431644	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left atrial antero-posterior diameter	30,201 European ancestry individuals	NA	2q37.1	NR	rs6431644-A	0.3911	4E-6		0.0181	[0.01-0.026] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
2376	chr2	234776983	234776984	rs114630474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114630474-A	NR	9E-19		0.0989	[0.077-0.121] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234776983	234776984	rs114630474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114630474-A	NR	5E-14		0.0904	[0.067-0.114] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234786585	234786586	rs213549	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	2q37.1		rs213549-C	NR	1E-41	(additive)	1.327	[1.135-1.519] unit increase	Illumina [5894709] (imputed)	N
2376	chr2	234791439	234791440	rs62192317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs62192317-T	NR	4E-18		0.1011	[0.078-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234791439	234791440	rs62192317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs62192317-T	NR	7E-13		0.0911	[0.066-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234791606	234791607	rs114896551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114896551-A	NR	2E-14		0.0684	[0.051-0.086] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234796706	234796707	rs11674391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11674391-A	NR	2E-19		0.0791	[0.062-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234796706	234796707	rs11674391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11674391-A	NR	8E-12		0.0651	[0.046-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234798768	234798769	rs114318917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114318917-T	NR	3E-97		0.283	[0.26-0.31] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234798768	234798769	rs114318917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114318917-T	NR	3E-55		0.2248	[0.2-0.25] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234802869	234802870	rs17863834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863834-A	NR	3E-43		0.157	[0.13-0.18] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234802869	234802870	rs17863834	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863834-A	NR	3E-22		0.1214	[0.097-0.146] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234814058	234814059	rs10187654	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	2q37.1	intergenic	rs10187654-?	NR	9E-6	(FEV1/FVC decline in non-asthmatics)	0.1506	[0.084-0.217] unit increase	Illumina [~ 2500000] (imputed)	N
2376	chr2	234815004	234815005	rs4663983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls, 387 East Asian ancestry cases, 178,339 East Asian ancestry controls	NA	2q37.1		rs4663983-G	NR	5E-14		0.1744	[0.13-0.22] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2376	chr2	234815004	234815005	rs4663983	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antimigraine preparations)	5,521 European ancestry cases, 114,323 European ancestry controls	NA	2q37.1	TRPM8	rs4663983-G	0.193803	9E-15		0.18897869	[0.14-0.24] unit decrease	Affymetrix [7288503] (imputed)	N
2376	chr2	234815004	234815005	rs4663983	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	2q37.1	TRPM8	rs4663983-G	0.191953	2E-11		0.055777814	[0.04-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
2376	chr2	234818868	234818869	rs7577262	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q37.1	TRPM8	rs7577262-A	0.37	7E-7	(MAP, Time 0)	1.0	[0.61-1.39] mmHg decrease	Affymetrix [2216774] (imputed)	N
2376	chr2	234818868	234818869	rs7577262	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	2q37.1	TRPM8	rs7577262-A	0.37	3E-8	(SBP, Time 0)	1.71	[1.1-2.32] mmHg decrease	Affymetrix [2216774] (imputed)	N
2376	chr2	234820577	234820578	rs6724624	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine without aura	8,348 European ancestry cases, 139,622 European ancestry controls	NA	2q37.1	TRPM8, HJURP	rs6724624-?	0.8	1E-9		1.1627907	[1.11-1.22]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
2376	chr2	234824558	234824559	rs1985366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	2q37.1		rs1985366-C	NR	2E-10		0.0491	[0.034-0.064] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2376	chr2	234824730	234824731	rs1965629	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	2q37.1	MSL3P1, TRPM8	rs1965629-?	NR	7E-19		1.0893246	[1.07-1.11]	Illumina [13763073] (imputed)	N
2376	chr2	234825092	234825093	rs10166942	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	2q37.1	TRPM8, HJURP	rs10166942-?	0.8	1E-23		1.0638298	[1.01-1.12]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
2376	chr2	234825092	234825093	rs10166942	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	2q37.1	TRPM8	rs10166942-?	0.82	1E-12		1.28	[1.19-1.37]	Illumina [1246388] (imputed)	N
2376	chr2	234825092	234825093	rs10166942	21666692	Chasman DI	2011-06-12	Nat Genet	Genome-wide association study reveals three susceptibility loci for common migraine in the general population.	Migraine	5,122 European ancestry cases, 18,108 European ancestry controls	3,831 European ancestry cases, 13,889 European ancestry controls	2q37.1	TRPM8	rs10166942-T	0.81	6E-12		1.18	[1.12-1.22]	Affymetrix, Illumina [2608509] (imputed)	N
2376	chr2	234825368	234825369	rs2362290	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	2q37.1	TRPM8, HJURP	rs2362290-A	NR	6E-16		0.0141	[0.011-0.017] unit decrease	Affymetrix [9304965] (imputed)	N
2376	chr2	234827660	234827661	rs6741751	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	2q37.1	TRPM8	rs6741751-?	0.9	9E-11		1.25	[1.16-1.33]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2376	chr2	234827660	234827661	rs6741751	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	2q37.1	TRPM8	rs6741751-?	0.9	1E-7		1.23	[1.14-1.33]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2376	chr2	234827660	234827661	rs6741751	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	2q37.1	TRPM8	rs6741751-?	0.9	1E-8		1.27	[1.16-1.37]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2376	chr2	234827660	234827661	rs6741751	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	2q37.1	TRPM8	rs6741751-?	0.9	9E-14		1.15	[1.11-1.19]	Affymetrix, Illumina [~ 2300000] (imputed)	N
2376	chr2	234829868	234829869	rs1003757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1003757-A	NR	7E-56		0.0686	[0.06-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234829868	234829869	rs1003757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs1003757-A	NR	4E-44		0.066	[0.057-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234835309	234835310	rs17863840	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17863840-T	NR	9E-29		0.1436	[0.12-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234835309	234835310	rs17863840	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17863840-T	NR	7E-18		0.1214	[0.094-0.149] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234843493	234843494	rs10490012	31319653	Jeon C	2019-07-12	Epidemiol Health	Bilirubin and risk of ischemic heart disease in Korea: A two-sample Mendelian randomization study.	Bilirubin levels	33,598 Korean ancestry individuals	NA	2q37.1	TRPM8	rs10490012-T	NR	1E-10		0.017	[0.011-0.023] unit decrease	NR [at least 830000] (imputed)	N
2376	chr2	234852691	234852692	rs12472151	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Alcohol consumption	7,188 European ancestry individuals	NA	2q37.1	NR	rs12472151-A	0.048	2E-6		8.0	[NR] unit increase	Illumina [527829]	N
2376	chr2	234860162	234860163	rs17862928	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.1	DKFZp762E1312	rs17862928-?	NR	3E-6	(isocitrate)	1.8756236	[1.09-2.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
2376	chr2	234863787	234863788	rs7593557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs7593557-A	NR	3E-191		0.1506	[0.14-0.16] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234863787	234863788	rs7593557	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs7593557-A	NR	8E-124		0.1296	[0.12-0.14] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234871342	234871343	rs10929321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs10929321-A	NR	5E-102		0.0544	[0.05-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234871342	234871343	rs10929321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs10929321-A	NR	3E-59		0.0444	[0.039-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234875432	234875433	rs12185625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs12185625-G	NR	3E-32		0.0394	[0.033-0.046] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234875432	234875433	rs12185625	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs12185625-G	NR	3E-23		0.0357	[0.029-0.043] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234876036	234876037	rs13401339	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	2q37.1	TRPM8	rs13401339-?	NR	9E-6		0.143	[0.08-0.206] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2376	chr2	234876836	234876837	rs17862931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17862931-G	NR	9E-37		0.0612	[0.052-0.071] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234876836	234876837	rs17862931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17862931-G	NR	7E-21		0.0492	[0.039-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
2376	chr2	234876842	234876843	rs10171428	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	2q37.1	TRPM8	rs10171428-?		3E-6		0.118	[0.069-0.167] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2376	chr2	234878909	234878910	rs17862932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17862932-T	NR	9E-20		0.2717	[0.21-0.33] unit increase	Affymetrix [9000000] (imputed)	N
2376	chr2	234878909	234878910	rs17862932	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17862932-T	NR	1E-9		0.1902	[0.13-0.25] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234886691	234886692	rs6717651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs6717651-A	NR	3E-121		0.0824	[0.076-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234886691	234886692	rs6717651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs6717651-A	NR	1E-80		0.0722	[0.065-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234891985	234891986	rs11563210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs11563210-G	NR	5E-22		0.0656	[0.052-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234891985	234891986	rs11563210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs11563210-G	NR	1E-11		0.0502	[0.036-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234898762	234898763	rs116241540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs116241540-A	NR	8E-35		0.1099	[0.092-0.127] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234898762	234898763	rs116241540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs116241540-A	NR	4E-24		0.0986	[0.08-0.118] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234899524	234899525	rs4663997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs4663997-G	NR	2E-19		0.0804	[0.063-0.098] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234899524	234899525	rs4663997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs4663997-G	NR	8E-16		0.0779	[0.059-0.097] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234903754	234903755	rs17864771	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17864771-G	NR	2E-10		0.0508	[0.035-0.066] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234903754	234903755	rs17864771	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17864771-G	NR	8E-11		0.0558	[0.039-0.073] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234904039	234904040	rs1024608	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1024608-A	NR	2E-12		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234910973	234910974	rs1860162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs1860162-C	NR	6E-39		0.1025	[0.087-0.118] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234910973	234910974	rs1860162	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs1860162-C	NR	8E-24		0.0863	[0.069-0.103] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234911366	234911367	rs6751169	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	2q37.1		rs6751169-?	NR	5E-6		1.53927	[1.35-1.72]	NR [674885]	N
2377	chr2	234926749	234926750	rs17865681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17865681-A	NR	2E-11		0.0383	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234926749	234926750	rs17865681	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17865681-A	NR	2E-11		0.0414	[0.029-0.054] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234928516	234928517	rs1987842	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	2q37.1	TRPM8	rs1987842-?		4E-6				Illumina [859311]	N
2377	chr2	234929169	234929170	rs114243364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs114243364-A	NR	9E-14		0.0539	[0.04-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234929169	234929170	rs114243364	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs114243364-A	NR	1E-9		0.0479	[0.033-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234929558	234929559	rs9287650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs9287650-C	NR	9E-19		0.0484	[0.038-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234929558	234929559	rs9287650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs9287650-C	NR	3E-13		0.0434	[0.032-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	234930310	234930311	rs17866593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17866593-A	NR	6E-79		0.0528	[0.047-0.058] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234930310	234930311	rs17866593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17866593-A	NR	5E-46		0.0431	[0.037-0.049] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234930681	234930682	rs17864784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs17864784-A	NR	2E-28		0.0761	[0.063-0.09] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234930681	234930682	rs17864784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs17864784-A	NR	3E-23		0.0735	[0.059-0.088] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234940794	234940795	rs76114682	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs76114682-T	NR	2E-15		0.0292	[0.022-0.036] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234940794	234940795	rs76114682	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs76114682-T	NR	2E-14		0.0305	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234941289	234941290	rs4616477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs4616477-T	NR	1E-37		0.0334	[0.028-0.038] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234941289	234941290	rs4616477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs4616477-T	NR	4E-21		0.0266	[0.021-0.032] unit increase	Affymetrix [9000000] (imputed)	N
2377	chr2	234959641	234959642	rs34347825	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	2q37.1		rs34347825-?	NR	1E-25		0.120803	[0.098-0.144] unit decrease	NR [9800000] (imputed)	N
2377	chr2	234992832	234992833	rs250959	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.1	NR	rs250959-?	NR	1E-8				Affymetrix [NR]	N
2377	chr2	234998634	234998635	rs111226561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs111226561-T	NR	1E-12		0.0824	[0.06-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	235010948	235010949	rs75743485	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	2q37.1	NR	rs75743485-?		2E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
2377	chr2	235011202	235011203	rs13384101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs13384101-A	NR	2E-26		0.0296	[0.024-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
2377	chr2	235011202	235011203	rs13384101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs13384101-A	NR	9E-21		0.0281	[0.022-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2378	chr2	235029650	235029651	rs79260437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs79260437-T	NR	2E-12		0.0866	[0.062-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
2378	chr2	235029650	235029651	rs79260437	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	2q37.1	NR	rs79260437-T	NR	2E-10		0.0853	[0.059-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
2378	chr2	235044904	235044905	rs35112299	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs35112299-G	NR	9E-10		0.028	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
2379	chr2	235144786	235144787	rs4663116	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Post-traumatic stress disorder	1,698 Peruvian cases, 1,716 Peruvian controls	NA	2q37.1	NR	rs4663116-?		7E-6		1.2540758	[NR]	NR [3389129] (imputed)	N
2379	chr2	235148181	235148182	rs72982121	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	2q37.1	NR	rs72982121-G	NR	6E-6		0.2792	[0.16-0.4] SD units decrease	NR [10700000] (imputed)	N
2379	chr2	235209794	235209795	rs4663379	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	2q37.1	SPP2, ARL4C	rs4663379-G	NR	1E-9		6.078	z-score increase	Illumina [632375]	N
2379	chr2	235210292	235210293	rs7575512	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	2q37.1	NR	rs7575512-T	NR	3E-10		0.13	[0.091-0.169] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2379	chr2	235210292	235210293	rs7575512	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	2q37.1	NR	rs7575512-T	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
2379	chr2	235210726	235210727	rs12151790	20548944	Hsu YH	2010-06-10	PLoS Genet	An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.	Osteoporosis-related phenotypes	2,038 European ancestry female individuals, 1,531 European ancestry male individuals	5,595 European ancestry female individuals, 2,126 European ancestry male individuals	2q37.1	SPP2	rs12151790-A	0.40	5E-7	(FN BMD, women)	0.4	[NR] g/cm2 increase	Affymetrix [433510]	N
2379	chr2	235214647	235214648	rs13001243	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	2q37.1	ARL4C	rs13001243-?	NR	2E-7	(African)			Illumina [4404269] (imputed)	N
2380	chr2	235302809	235302810	rs11887188	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q37.1	ARL4C	rs11887188-T	0.03	2E-8	(DBP, during intervention)	3.28	[2.14-4.42] mmHg decrease	Affymetrix [2216774] (imputed)	N
2380	chr2	235302809	235302810	rs11887188	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium and potassium intervention)	1,836 Han Chinese ancestry individuals	654 Han Chinese ancestry individuals	2q37.1	ARL4C	rs11887188-T	0.03	1E-6	(MAP, during intervention)	2.98	[1.76-4.20] mmHg decrease	Affymetrix [2216774] (imputed)	N
2380	chr2	235352583	235352584	rs6431260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q37.1		rs6431260-C	0.3	2E-15		7.97	z score increase	Affymetrix [9061022] (imputed)	N
2380	chr2	235361144	235361145	rs148944993	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	2q37.1	AC097713.3	rs148944993-A	0.009	6E-7		4.51	[2.50-8.15]	Illumina [8672852] (imputed)	N
2380	chr2	235373348	235373349	rs12471028	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	2q37.1	NR	rs12471028-C	NR	2E-12		0.0858	[0.062-0.11] unit increase	Affymetrix [9000000] (imputed)	N
2381	chr2	235465857	235465858	rs1108143	26701879	Wang Z	2015-12-23	Gut	Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies.	Non-cardia gastric cancer	2,031 Han Chinese ancestry cases, 4,970 Han Chinese ancestry controls	3,564 Han Chinese ancestry cases, 4,637 Han Chinese ancestry controls	2q37.1	intergenic	rs1108143-G	0.11	3E-7		1.23	[1.14-1.34]	Affymetrix, Illumina [6223896] (imputed)	N
2381	chr2	235472594	235472595	rs13024279	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals	NA	2q37.1	ARL4C	rs13024279-A	0.436	9E-9		2.282	[1.51-3.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2381	chr2	235503326	235503327	rs2204511	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Total bilirubin levels	6,018 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	2q37.1		rs2204511-G	0.235	1E-8		0.12	[0.081-0.159] unit decrease	Illumina [7880617]	N
2381	chr2	235514607	235514608	rs79539148	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	2q37.1	NR	rs79539148-?	NR	5E-6		1.3718209	[1.20-1.57]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2381	chr2	235534398	235534399	rs144972597	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	2q37.1		rs144972597-?	NR	1E-6		1.2065076	[1.11783502929018-1.30221406455813]	Illumina [7827597] (imputed)	N
2382	chr2	235563691	235563692	rs1405130	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	2q37.1	intergenic	rs1405130-T	0.5054	1E-8		0.0325	[0.021-0.044] unit increase	NR [8041861] (imputed)	N
2382	chr2	235575489	235575490	rs13011120	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q37.1		rs13011120-G	0.44	1E-9		6.1	z score increase	Affymetrix [9061022] (imputed)	N
2382	chr2	235575489	235575490	rs13011120	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q37.1	NR	rs13011120-G	0.4671	5E-11				NR [9056863] (imputed)	N
2382	chr2	235587987	235587988	rs12997096	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q37.1	NR	rs12997096-T	0.4909	6E-9				NR [9056863] (imputed)	N
2382	chr2	235601063	235601064	rs4663476	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	2q37.1	AC010148.1	rs4663476-G	NR	8E-6	(AA)	1.23	[0.66-1.80] unit decrease	Affymetrix [~ 2300000] (imputed)	N
2382	chr2	235604645	235604646	rs145586115	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	2q37.1	ARL4C	rs145586115-T	0.97	2E-8	(African)	2.57	[0.042-5.098] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
2382	chr2	235609673	235609674	rs7606512	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	2q37.2	Intergenic	rs7606512-?		9E-7		1.837	[NR]	Affymetrix [492217] (imputed)	N
2382	chr2	235615196	235615197	rs6736997	20686608	Low SK	2010-07-29	PLoS One	Genome-wide association study of pancreatic cancer in Japanese population.	Pancreatic cancer	991 Japanese ancestry cases, 5,209 Japanese ancestry controls	NA	2q37.2	ARL4C	rs6736997-A	0.33	6E-6	(recessive)	1.57	[1.29-1.91]	Illumina [420236]	N
2382	chr2	235654109	235654110	rs11677128	29947131	Smit DJA	2018-06-26	Hum Brain Mapp	Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity.	Electroencephalogram traits	up to 8,425 European and unknown ancestry individuals	NA	2q37.2	NR	rs11677128-?	NR	4E-7	(deltaCz)	5.053	z score increase	Affymetrix, Illumina, Perlegen [at least 4959085] (imputed)	N
2382	chr2	235662800	235662801	rs111812445	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	2q37.2		rs111812445-A	0.018431	5E-7		1.8224896	NR	Affymetrix [7846216] (imputed)	N
2383	chr2	235679244	235679245	rs1017494	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2q37.2	LINC00299	rs1017494-?	NR	2E-16		1.0638298		NR [74888535] (imputed)	N
2383	chr2	235684966	235684967	rs9973657	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	2q37.2	NR	rs9973657-?	NR	6E-6		0.0982	[0.056-0.141] unit increase	Illumina [at least 560000] (imputed)	N
2383	chr2	235689415	235689416	rs191546992	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q37.2	NR	rs191546992-?	NR	2E-6		1.2499	[0.73-1.77] unit increase	NR [13958389] (imputed)	N
2383	chr2	235711869	235711870	rs11687077	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2q37.2	LINC01173, SH3BP4	rs11687077-A	0.2175	3E-6		0.1451	[0.084-0.206] unit increase	NR [NR] (imputed)	N
2383	chr2	235711869	235711870	rs11687077	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	2q37.2	LINC01173, SH3BP4	rs11687077-A	0.2175	2E-7	(female)	0.1256	[0.079-0.173] unit increase	NR [NR] (imputed)	N
2383	chr2	235711869	235711870	rs11687077	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls	NA	2q37.2	LINC01173, SH3BP4	rs11687077-A	0.2091	3E-7	(female)	0.1259	[0.078-0.174] unit increase	NR [NR] (imputed)	N
2383	chr2	235759198	235759199	rs555810160	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	2q37.2	AC010148.1	rs555810160-A	0.9972	3E-6		0.9242	[0.54-1.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2383	chr2	235793751	235793752	rs2059752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q37.2		rs2059752-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2384	chr2	235807628	235807629	rs6431308	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	2q37.2	NR	rs6431308-A	0.7639	2E-7		1.2345679		Affymetrix [at least 416462] (imputed)	N
2384	chr2	235814673	235814674	rs35176804	28424481	Sugiura-Ogasawara M	2017-04-20	J Hum Genet	The first genome-wide association study identifying new susceptibility loci for obstetric antiphospholipid syndrome.	Obstetric antiphospholipid syndrome	115 Japanese ancestry female cases, 419 Japanese ancestry male and female controls	NA	2q37.2	SH3BP4	rs35176804-A	0.14	9E-6		2.57	[1.68-3.93]	Affymetrix [426344]	N
2384	chr2	235845801	235845802	rs58921065	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.2	NR	rs58921065-A	0.03833	2E-8	(SCP2)	0.4647	NR unit increase	Illumina [1671387] (imputed)	N
2384	chr2	235857113	235857114	rs2042831	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	2q37.2	LINC01173, SH3BP4	rs2042831-?		2E-7	(African American)	0.24173836	[0.15-0.33] unit decrease	Illumina [13620258] (imputed)	N
2384	chr2	235890000	235890001	rs114266592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q37.2		rs114266592-C	NR	1E-9		0.0453	[0.031-0.06] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2384	chr2	235890000	235890001	rs114266592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q37.2	SH3BP4	rs114266592-C	0.026482	3E-12		0.050661523	[0.036-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
2384	chr2	235890000	235890001	rs114266592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q37.2	SH3BP4	rs114266592-C	0.026479	7E-14		0.05420736	[0.04-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
2384	chr2	235890000	235890001	rs114266592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.2	NR	rs114266592-C	0.0262522	8E-13				Affymetrix, Illumina [24588908] (imputed)	N
2384	chr2	235890000	235890001	rs114266592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q37.2	NR	rs114266592-C	0.027216	2E-15		0.04858	[0.037-0.061] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2384	chr2	235900170	235900171	rs11676855	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	2q37.2	SH3BP4	rs11676855-?	0.67	9E-6		1.43	[1.22-1.67]	Affymetrix [832357]	N
2384	chr2	235907346	235907347	rs142527987	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q37.2	Intergenic	rs142527987-?		7E-6		1.14	[1.08-1.20]	Illumina [7645193] (imputed)	N
2385	chr2	235947947	235947948	rs79309730	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	2q37.2	SH3BP4	rs79309730-C	0.9427	2E-6	(EA)			Illumina [NR] (imputed)	N
2385	chr2	235957952	235957953	rs72987446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	2q37.2		rs72987446-T	NR	1E-8		0.0543	[0.036-0.073] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
2385	chr2	235960892	235960893	rs10174126	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	2q37.2	SH3BP4	rs10174126-?	0.43	7E-7	(CP)	1.59	[1.32-1.92]	Illumina [NR]	N
2386	chr2	236128950	236128951	rs1991705	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.2	LOC642692	rs1991705-A	0.175	7E-6	(Total glutathione )	0.03	[NR] umol/L increase	Illumina [899892]	N
2388	chr2	236353734	236353735	rs116039626	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	2q37.2	Intergenic	rs116039626-T	0.99	2E-6	(AA)	0.218	NR unit increase	Illumina [NR] (imputed)	N
2388	chr2	236360881	236360883	rs34095839	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	2q37.2	NR	rs34095839-C	0.1884	2E-6		0.1871	[0.11-0.26] unit increase	Illumina [10677593] (imputed)	N
2388	chr2	236365349	236365350	rs9789377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q37.2		rs9789377-A	0.373531	1E-17		0.019965908	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2388	chr2	236365349	236365350	rs9789377	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	2q37.2	SH3BP4, AGAP1	rs9789377-?	NR	5E-9		0.02484	[0.017-0.033] unit increase novel	Illumina [6108953] (imputed)	N
2388	chr2	236365349	236365350	rs9789377	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	2q37.2	SH3BP4, AGAP1	rs9789377-?	NR	3E-8		0.02354	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
2388	chr2	236367471	236367472	rs1517006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	2q37.2		rs1517006-T	0.543995	6E-10		0.0225424	[0.015-0.03] unit increase	Illumina [13476266] (imputed)	N
2388	chr2	236367471	236367472	rs1517006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	2q37.2		rs1517006-T	0.543556	9E-10		0.0225005	[0.015-0.03] unit increase	Illumina [13476299] (imputed)	N
2388	chr2	236367471	236367472	rs1517006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q37.2		rs1517006-T	0.371575	1E-26		0.024814693	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2388	chr2	236367471	236367472	rs1517006	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q37.2	NR	rs1517006-C	0.625584	1E-30		0.022672	[0.019-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q37.2		rs4663199-A	NR	4E-25		0.0209	[0.017-0.025] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q37.2		rs4663199-A	NR	8E-27		0.0217	[0.018-0.026] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q37.2		rs4663199-T	0.601	2E-18		0.1	[-0.12--0.08] % decrease	Affymetrix [NR] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q37.2		rs4663199-A	0.400491	3E-10		0.014259734	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q37.2		rs4663199-A	0.400452	6E-26		0.0234418	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q37.2		rs4663199-A	0.400466	2E-23		0.02260996	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q37.2		rs4663199-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2388	chr2	236368038	236368039	rs4663199	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q37.2		rs4663199-?	NR	7E-26				NR [~ 8900000] (imputed)	N
2388	chr2	236369230	236369231	rs1356335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q37.2		rs1356335-A	NR	2E-11		0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.2	NR	rs1356334-G	0.602162	8E-29				Affymetrix, Illumina [22063850] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.428956	1E-14				Affymetrix, Illumina [24332387] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.401957	3E-12		0.013239	[0.0095-0.017] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.423458	2E-36				Affymetrix, Illumina [24246363] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.401939	2E-29		0.021041	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.425342	9E-31				Affymetrix, Illumina [20825802] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q37.2	NR	rs1356334-A	0.401337	1E-27		0.021634	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2388	chr2	236369477	236369478	rs1356334	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q37.2		rs1356334-?	NR	1E-32				NR [~ 8900000] (imputed)	N
2389	chr2	236514768	236514769	rs11676226	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.2		rs11676226-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2389	chr2	236539306	236539307	rs6431393	23667675	Tanikawa C	2013-05-07	PLoS One	Genome wide association study of age at menarche in the Japanese population.	Menarche (age at onset)	15,495 Japanese ancestry females	NA	2q37.2	AGAP1	rs6431393-A	0.4948	4E-6		0.0776	[0.045-0.111] year increase	Illumina [2310762] (imputed)	N
2389	chr2	236562108	236562122	rs202189921	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	2q37.2	NR	rs202189921-?	NR	2E-6	(AA)	3.73	[NR]	Affymetrix, Illumina [NR] (imputed)	N
2389	chr2	236570178	236570179	rs55823170	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.2		rs55823170-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2390	chr2	236601560	236601561	rs77975954	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q37.2		rs77975954-C	NR	2E-8		0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2390	chr2	236617465	236617466	rs10211205	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	2q37.2	AGAP1	rs10211205-?	NR	2E-6		0.131	[0.057-0.205] unit increase	Illumina [at least 13000000] (imputed)	N
2390	chr2	236618225	236618226	rs10190094	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	2q37.2	NR	rs10190094-G	0.746182	1E-6		1.1448197	[1.08-1.21]	Affymetrix [16309199] (imputed)	N
2390	chr2	236618479	236618480	rs560405754	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	2q37.2	NR	rs560405754-C	0.989579	8E-6		0.314	[0.18-0.45] unit increase	NR [9260588] (imputed)	N
2390	chr2	236619054	236619055	rs2138497	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	2q37.2	AGAP1	rs2138497-G	0.414804	5E-6		0.18667	[0.11-0.27] unit decrease	NR [7263501] (imputed)	N
2390	chr2	236636986	236636987	rs2696418	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	2q37.2	NR	rs2696418-A	0.792585	2E-8		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
2390	chr2	236671704	236671705	rs566592993	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q37.2		rs566592993-T	0.22	2E-14		7.63	z score increase	Affymetrix [9061022] (imputed)	N
2390	chr2	236671704	236671705	rs566592993	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q37.2	NR	rs566592993-T	0.2409	2E-17				NR [9056863] (imputed)	N
2390	chr2	236675429	236675430	rs13034294	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.2	Intergenic	rs13034294-A	0.5219	6E-10	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2390	chr2	236681670	236681671	rs72977127	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Anterior thalamic nuclei volume	30,114 white British ancestry individuals			AGAP1	rs72977127-C	0.2776	3E-10		0.0572998	[0.039-0.075] unit decrease	Affymetrix [8165723] (imputed)	N
2390	chr2	236713783	236713784	rs12464260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q37.2		rs12464260-C	0.26	6E-42		13.57	z score increase	Affymetrix [9061022] (imputed)	N
2390	chr2	236713783	236713784	rs12464260	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q37.2		rs12464260-C	0.26	7E-15		7.78	z score increase	Affymetrix [9061022] (imputed)	N
2390	chr2	236713783	236713784	rs12464260	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q37.2	NR	rs12464260-C	0.3011	2E-13				NR [9056863] (imputed)	N
2391	chr2	236718301	236718302	rs72983061	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	2q37.2		rs72983061-?	NR	7E-15				NR [9705931] (imputed)	N
2391	chr2	236737863	236737864	rs138422120	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-1031 abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.2		rs138422120-A	0.0109816	4E-8		0.419179	[0.27-0.57] unit increase	Illumina [7980478] (imputed)	N
2391	chr2	236741887	236741888	rs908443	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q37.2	NR	rs908443-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2391	chr2	236741887	236741888	rs908443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q37.2		rs908443-?	NR	5E-11				NR [~ 8900000] (imputed)	N
2391	chr2	236744625	236744626	rs4663617	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.2		rs4663617-A	0.235	4E-10		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2391	chr2	236762850	236762851	rs4625852	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q37.2	NR	rs4625852-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
2391	chr2	236786085	236786086	rs987071	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q37.2	NA	rs987071-T	0.7662	8E-10		0.0126	[0.0087-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
2391	chr2	236788174	236788175	rs62190914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.2		rs62190914-T	0.636	1E-9		0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2391	chr2	236788174	236788175	rs62190914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.2	Intergenic	rs62190914-T	0.636	1E-11	(MTAG)	0.0093	[0.0066-0.012] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2391	chr2	236792837	236792838	rs10178509	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	2q37.2		rs10178509-T	NR	1E-8		0.95		Illumina [NR] (imputed)	N
2391	chr2	236792837	236792838	rs10178509	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls	NA	2q37.2		rs10178509-T	NR	3E-6		0.94		Illumina [NR] (imputed)	N
2391	chr2	236795342	236795343	rs13025591	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Schizophrenia	2,111 European ancestry cases, 2,535 European ancestry controls	11,271 European ancestry cases, 14,601 European ancestry controls	2q37.2	CENTG2	rs13025591-?	NR	8E-8		1.11	[NR]	Affymetrix [745006]	N
2391	chr2	236795342	236795343	rs13025591	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	2q37.2	NR	rs13025591-?	NR	6E-6		1.07	[1.04-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
2391	chr2	236807892	236807893	rs4663213	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		2q37.2	AGAP1	rs4663213-G	0.221788	1E-8		0.0094607	[0.0062-0.0127] unit increase	Affymetrix [12370749]	N
2391	chr2	236830137	236830138	rs75965524	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 24 weeks)	98 European ancestry cases and controls	NA	2q37.2	AGAP1	rs75965524-G	0.22	4E-6	(CGI)	14.47		Illumina [266820] (imputed)	N
2391	chr2	236832073	236832074	rs12471554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.2	Intergenic	rs12471554-A	0.6468	2E-10	(MTAG)	0.011	[0.0077-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2391	chr2	236832073	236832074	rs12471554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	2q37.2	Intergenic	rs12471554-A	0.6443	1E-9	(MTAG)	0.0145	[0.0098-0.0192] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2392	chr2	236847317	236847318	rs10208807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q37.2		rs10208807-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2392	chr2	236848487	236848488	rs7568228	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q37.2	NR	rs7568228-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
2392	chr2	236854449	236854450	rs9808302	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	2q37.2	NA	rs9808302-A	0.5278	9E-10		0.0116	[0.0079-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
2392	chr2	236895785	236895786	rs6726398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	2q37.2		rs6726398-T	NR	9E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2392	chr2	236896150	236896153	rs138175875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q37.2		rs138175875-A	NR	8E-9		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2392	chr2	236900632	236900633	rs1530938	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q37.2	NR	rs1530938-A	0.4423	9E-10		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2392	chr2	236932962	236932963	rs10929159	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	2q37.2	NR	rs10929159-A	NR	7E-8		1.0626993		Illumina [11933700] (imputed)	N
2393	chr2	236990056	236990057	rs3768939	26516778	Bis JC	2015-10-30	PLoS One	Drug-Gene Interactions of Antihypertensive Medications and Risk of Incident Cardiovascular Disease: A Pharmacogenomics Study from the CHARGE Consortium.	Cardiovascular disease in hypertension (calcium channel blocker interaction)	Up to 3,527 European ancestry individuals with cardiovascular disease, up to 11,848 European ancestry individuals without cardiovascular disease	Up to 1,751 European ancestry individuals with cardiovascular disease, up to 1,267 African American ancestry individuals with cardiovascular disease, up to 2,874 African American ancestry individuals without cardiovascular disease	2q37.2	CENTG2	rs3768939-A	0.19	9E-7	(EA)	0.35	unit decrease	Affymetrix, Illumina [1807456] (imputed)	N
2393	chr2	237021345	237021346	rs3754648	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	2q37.2	ASB18, AGAP1, GBX2	rs3754648-G	0.34	5E-13		1.39	[1.27-1.53]	Illumina [792342]	N
2393	chr2	237034060	237034061	rs1064086	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive CD8+ T cell %CD8+ T cell	3,427 Sardinian (founder/genetic isolate) ancestry individuals	NA	2q37.2		rs1064086-A	0.32798	5E-8		0.1062	[0.068-0.144] unit decrease	Illumina [18349913] (imputed)	N
2393	chr2	237054355	237054356	rs72482130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.2		rs72482130-T	0.8464	5E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2393	chr2	237054355	237054356	rs72482130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.2	Intergenic	rs72482130-T	0.8464	7E-15	(MTAG)	0.0141	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2393	chr2	237056786	237056787	rs56221553	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	2q37.2	Y_RNA	rs56221553-G	0.1649	3E-10		0.017089585	[0.012-0.022] unit decrease	Affymetrix [up to 18485882] (imputed)	N
2393	chr2	237056839	237056840	rs56236451	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	2q37.2	ENSG00000207049	rs56236451-?	NR	7E-11		0.017760335	[0.012-0.023] unit increase	NR [7306098]	N
2393	chr2	237058143	237058144	rs11687170	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	2q37.2		rs11687170-T	0.8284	1E-8		42.972874	z score increase	NR [6814003]	N
2393	chr2	237058143	237058144	rs11687170	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	2q37.2	NR	rs11687170-T	0.828	1E-9		0.02108379	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
2393	chr2	237058143	237058144	rs11687170	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment (years of education)	up to 126,559 European ancestry individuals	NA	2q37.2	GBX2	rs11687170-T	0.77	3E-8		0.107	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 23218963] (imputed)	N
2393	chr2	237077179	237077180	rs60874983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.2	Intergenic	rs60874983-T	0.1734	2E-8	(MTAG)	0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2393	chr2	237077179	237077180	rs60874983	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.2	Intergenic	rs60874983-T	0.1733	2E-13	(MTAG)	0.0161	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2393	chr2	237102160	237102161	rs13429284	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	2q37.2	ASB18	rs13429284-C	0.143	6E-6		0.0639	[0.036-0.092] unit increase	NR [4841651] (imputed)	N
2393	chr2	237104028	237104029	rs2034669	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.2	NR	rs2034669-?	NR	1E-21				Affymetrix [NR]	N
2393	chr2	237105517	237105518	rs13401104	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	2q37.2	intergenic	rs13401104-A	0.176	3E-8		0.032	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2393	chr2	237105517	237105518	rs13401104	23722424	Rietveld CA	2013-05-30	Science	GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.	Educational attainment (college completion)	up to 126,559 European ancestry individuals	NA	2q37.2	LOC100128572	rs13401104-?	0.82	5E-9		1.1	[NR]	Affymetrix, Illumina, Perlegen [up to 23218963] (imputed)	N
2394	chr2	237137808	237137809	rs145633936	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	2q37.2	NR	rs145633936-T	0.007107	3E-6		0.8454	[0.49-1.2] unit decrease	Illumina [10677593] (imputed)	N
2394	chr2	237145480	237145481	rs55801537	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	2q37.2	NR	rs55801537-T	0.218	1E-8		0.00750907	[0.0049-0.0101] unit increase	NR [9732723] (imputed)	N
2394	chr2	237156548	237156549	rs13390159	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	2q37.2	ASB18, LOC728087, IQCA	rs13390159-A	0.16	2E-7	(LDL, diff)			Illumina [~ 2500000] (imputed)	N
2394	chr2	237186324	237186325	rs1453308	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	2q37.2	ASB18	rs1453308-A	0.198	2E-6		0.33	[0.19-0.47] unit decrease	Illumina [8203257] (imputed)	N
2394	chr2	237186697	237186698	rs1453307	28429243	Dudenkov TM	2017-04-20	Breast Cancer Res Treat	SLCO1B1 polymorphisms and plasma estrone conjugates in postmenopausal women with ER+ breast cancer: genome-wide association studies of the estrone pathway.	Estrone/androstenedione ratio in resected early stage-receptor positive breast cancer	707 European ancestry postmenopausal cases, 52 African ancestry postmenopausal cases, 15 Asian ancestry postmenopausal cases	NA	2q37.2	ASB18	rs1453307-G	0.1638	3E-6		0.3463	[0.2-0.49] unit increase	Illumina [8203257] (imputed)	N
2394	chr2	237209071	237209072	rs78681719	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	2q37.2	NR	rs78681719-G	NR	4E-6		1.5713		Affymetrix [8183964] (imputed)	N
2394	chr2	237231134	237231135	rs13411339	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	2q37.2	NR	rs13411339-T	0.03	9E-7		1.77	unit decrease	Illumina [8591557] (imputed)	N
2395	chr2	237252453	237252454	rs72978647	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.2	IQCA1	rs72978647-?		9E-6				Illumina [4322238] (imputed)	N
2396	chr2	237426880	237426881	rs76182733	32574161	Dapas M	2020-06-23	PLoS Med	Distinct subtypes of polycystic ovary syndrome with novel genetic associations: An unsupervised, phenotypic clustering analysis.	Polycystic ovary syndrome (reproductive subtype)	123 European ancestry cases, 2,964 European ancestry controls	84 European ancestry cases, 1,134 European ancestry controls	2q37.3	IQCA1	rs76182733-G	0.01	3E-9		5.68	3.00-10.78	Illumina [NR] (imputed)	N
2396	chr2	237433792	237433793	rs114971217	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors	207 European ancestry female cases, 2,774 European ancestry female controls	NA	2q37.3	IQCA1	rs114971217-A	2.0E-4	6E-7				Affymetrix, Illumina [16958466] (imputed)	N
2396	chr2	237437976	237437977	rs79869286	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	2q37.3		rs79869286-?	NR	3E-6		1.54188	[1.36-1.72]	NR [663102]	N
2396	chr2	237446883	237446884	rs13412209	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.3	NR	rs13412209-?	NR	2E-6				Affymetrix [NR]	N
2396	chr2	237489903	237489904	rs1045879	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	2q37.3	SSBP3	rs1045879-?		1E-8				NR [7428630] (imputed)	N
2396	chr2	237496189	237496190	rs12692190	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	2q37.3	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs12692190-?		3E-8				NR [7428630] (imputed)	N
2396	chr2	237497236	237497237	rs11901793	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 76)	19,670 European ancestry individuals	NA	2q37.3		rs11901793-?	NR	1E-24				NR [9705931] (imputed)	N
2396	chr2	237497236	237497237	rs11901793	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	Total mean fractional anisotropy measurement in first episode schizophrenia	93 Han Chinese cases, 134 Han Chinese controls	NA	2q37.3	CXCR7	rs11901793-?	NR	4E-8		0.02	unit decrease	Illumina [6055918] (imputed)	N
2397	chr2	237507313	237507314	rs59458775	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	2q37.3	NR	rs59458775-A	0.189	8E-6	(Females)	0.249677	[0.14-0.36] unit decrease	Illumina [~ 6600000] (imputed)	N
2397	chr2	237509206	237509207	rs896543	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	2q37.3	NR	rs896543-G	0.81	1E-6		1.54	[1.36-1.72]	Illumina [4058415] (imputed)	N
2397	chr2	237519495	237519496	rs56072732	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	2q37.3	ACKR3	rs56072732-T	0.06	6E-8		1.71		Illumina [8974355] (imputed)	N
2397	chr2	237521841	237521842	rs7607316	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	2q37.3	CXCR7	rs7607316-A	0.21	3E-6	(Never smoker)	1.29	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2397	chr2	237583721	237583722	rs144060362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.3	Intergenic	rs144060362-T	0.999	2E-6	(AA)	0.265	unit increase	Illumina [NR] (imputed)	N
2397	chr2	237583721	237583722	rs144060362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	2q37.3	Intergenic	rs144060362-T	0.999	3E-7	(AA)	1.44	NR unit increase	Illumina [NR] (imputed)	N
2397	chr2	237585367	237585368	rs2720107	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 204)	19,670 European ancestry individuals	NA	2q37.3		rs2720107-?	NR	1E-14				NR [9705931] (imputed)	N
2398	chr2	237667438	237667439	rs74932355	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	2q37.3	CXCR7	rs74932355-T	0.9063	3E-6	(AA)			Illumina [NR] (imputed)	N
2398	chr2	237688195	237688196	rs1897468	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q37.3	ACKR3	rs1897468-C	0.294632	4E-10		0.0126378	[0.0087-0.0166] unit increase	NR [13737936] (imputed)	N
2398	chr2	237691812	237691813	rs999033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs999033-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2398	chr2	237705104	237705105	rs56286103	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	2q37.3		rs56286103-?	NR	5E-28				NR [9705931] (imputed)	N
2398	chr2	237707920	237707921	rs13012716	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	2q37.3		rs13012716-T	0.32	6E-47		14.39	z score increase	Affymetrix [9061022] (imputed)	N
2398	chr2	237707920	237707921	rs13012716	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q37.3		rs13012716-T	0.32	4E-70		17.71	z score increase	Affymetrix [9061022] (imputed)	N
2398	chr2	237707920	237707921	rs13012716	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	2q37.3		rs13012716-T	0.32	1E-27		10.91	z score increase	Affymetrix [9061022] (imputed)	N
2398	chr2	237707920	237707921	rs13012716	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	2q37.3	NR	rs13012716-T	0.3219	1E-17				NR [9056863] (imputed)	N
2398	chr2	237707920	237707921	rs13012716	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	2q37.3	NR	rs13012716-T	0.3219	1E-17				NR [9056863] (imputed)	N
2398	chr2	237708486	237708487	rs1344762	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	2q37.3	SSBP3	rs1344762-?		8E-18				NR [7428630] (imputed)	N
2398	chr2	237711075	237711076	rs4663669	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	2q37.3	CAPZB, MINOS1-NBL1, MINOS1, NBL1	rs4663669-?		1E-10				NR [7428630] (imputed)	N
2398	chr2	237711075	237711076	rs4663669	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	2q37.3	TBX15, WARS2	rs4663669-?		3E-10				NR [7428630] (imputed)	N
2398	chr2	237711075	237711076	rs4663669	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	2q37.3	ACKR3	rs4663669-?		8E-22				NR [7428630] (imputed)	N
2398	chr2	237715215	237715216	rs62184450	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	2q37.3	AC011286.1, AC112715.2	rs62184450-?	NR	2E-10	(cysteinylglycine)	0.77	[NR] unit increase	Illumina [14760605] (imputed)	N
2398	chr2	237716894	237716895	rs115659367	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q37.3	NR	rs115659367-?	NR	6E-6		0.041847	[0.024-0.06] unit increase	Affymetrix [805426] (imputed)	N
2398	chr2	237756549	237756550	rs76143056	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q37.3		rs76143056-G	NR	2E-8		0.0143	[0.0094-0.0192] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs9287604-C	0.701333	5E-40				Affymetrix, Illumina [24649327] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs9287604-C	0.709931	8E-37				Affymetrix, Illumina [23114412] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q37.3	NR	rs9287604-C	0.735957	8E-17		0.017763	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7325	1E-12		0.02912524	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7326	3E-13		0.02989953	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7325	4E-14		0.03095841	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7325	7E-14		0.03065752	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7325	1E-13		0.03059559	[0.023-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237776164	237776165	rs9287604	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	2q37.3	intergenic	rs9287604-C	0.7326	2E-13		0.03024851	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2399	chr2	237778829	237778830	rs10176744	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q37.3		rs10176744-T	NR	3E-18		0.0216	[0.017-0.027] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2399	chr2	237779228	237779229	rs10164769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q37.3		rs10164769-T	NR	1E-20		0.0209	[0.017-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2399	chr2	237779228	237779229	rs10164769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	2q37.3	NR	rs10164769-T	0.740493	9E-26		0.026477704	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2399	chr2	237779228	237779229	rs10164769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	2q37.3	NR	rs10164769-T	0.74307	8E-38		0.027162	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2399	chr2	237780726	237780727	rs4074882	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	2q37.3	NR	rs4074882-C	0.741751	6E-37		0.02794	[0.024-0.032] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2399	chr2	237780726	237780727	rs4074882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q37.3		rs4074882-?	NR	1E-25				NR [~ 8900000] (imputed)	N
2399	chr2	237781192	237781193	rs4077980	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q37.3		rs4077980-G	0.26399	2E-11		0.016774736	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2399	chr2	237788811	237788812	rs2568565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs2568565-C	0.709093	2E-14				Affymetrix, Illumina [23467995] (imputed)	N
2399	chr2	237796391	237796392	rs2568569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	2q37.3		rs2568569-G	0.739043	7E-27		0.027182592	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2399	chr2	237799613	237799614	rs188654279	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-7 levels	3,409 Finnish ancestry individuals	NA	2q37.3	NR	rs188654279-G		6E-6		0.7669	[0.44-1.1] SD units increase	NR [10700000] (imputed)	N
2399	chr2	237805686	237805687	rs7599706	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	2q37.3	intergenic	rs7599706-?		4E-8				Illumina [NR]	N
2399	chr2	237815356	237815357	rs6706665	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	2q37.3		rs6706665-G	NR	4E-8		0.085	[0.054-0.116] unit increase	Affymetrix [509886] (imputed)	N
2399	chr2	237816291	237816292	rs6710792	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	2q37.3		rs6710792-G	NR	3E-8		0.087	[0.056-0.118] unit increase	Affymetrix [509886] (imputed)	N
2399	chr2	237816370	237816371	rs6753388	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	2q37.3		rs6753388-T	NR	3E-8		0.087	[0.056-0.118] unit increase	Affymetrix [509886] (imputed)	N
2399	chr2	237816533	237816534	rs4663679	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	2q37.3		rs4663679-T	NR	4E-8		0.086	[0.055-0.117] unit increase	Affymetrix [509886] (imputed)	N
2400	chr2	237905330	237905331	rs11677911	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	2q37.3	COPS8	rs11677911-T	0.247	8E-6		0.015	[0.0085-0.0219] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2400	chr2	237933965	237933966	rs2318131	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	2q37.3	COPS8	rs2318131-C	0.343	3E-12		0.038	[0.027-0.049] unit increase	Illumina [7428049] (imputed)	N
2400	chr2	237979854	237979855	rs72973983	33226468	Foss-Skiftesvik J	2020-11-23	Childs Nerv Syst	Genome-wide association study across pediatric central nervous system tumors implicates shared predisposition and points to 1q25.2 (PAPPA2) and 11p12 (LRRC4C) as novel candidate susceptibility loci.	Pediatric central nervous system tumors (early onset)(pleiotropy)	326 European ancestry cases, 4,320 European ancestry controls	NA	2q37.3	NR	rs72973983-?	NR	2E-6		1.98	1.5-2.61	Illumina [959859] (imputed)	N
2401	chr2	238036366	238036367	rs12620999	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	2q37.3	COPS8	rs12620999-C	0.19	3E-6		1.13	[1.06-1.21]	Illumina [~ 2100000] (imputed)	N
2401	chr2	238070884	238070885	rs4290604	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	2q37.3	COPS8	rs4290604-?		8E-6	(AA)	0.208	[0.13-0.28] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2401	chr2	238071156	238071157	rs111308888	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	2q37.3	COPS8, COL6A3	rs111308888-T	0.962901038	7E-6		1.1643438	[1.09-1.24]	Illumina [10439017] (imputed)	N
2401	chr2	238080050	238080051	rs11687040	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	2q37.3	NR	rs11687040-?	0.01	4E-7		3.37	[2.11-5.40]	Affymetrix, Illumina [~ 6000000] (imputed)	N
2401	chr2	238110122	238110123	rs4078065	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to carbamazepine in focal epilepsy	424 European ancestry cases, 591 European ancestry controls	NA			rs4078065-?	NR	4E-6				Illumina [NR] (imputed)	N
2401	chr2	238149703	238149704	rs4292046	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to valproic acid in genetic generalized epilepsy	410 European ancestry responders, 155 European ancestry non-responders	NA	2q37.3	intergenic	rs4292046-?	NR	5E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
2401	chr2	238154635	238154636	rs66560819	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs66560819-G	0.93733	6E-11		0.12182	[0.085-0.159] increase	Affymetrix [11014269] (imputed)	N
2402	chr2	238158391	238158392	rs35535898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.3		rs35535898-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2402	chr2	238173052	238173053	rs12329366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs12329366-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2402	chr2	238218582	238218583	rs2029999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs2029999-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2402	chr2	238219498	238219499	rs7580831	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	2q37.3	COPS8, COL6A3	rs7580831-?	NR	4E-9		0.030633	[0.02-0.041] unit decrease	Illumina [4804024] (imputed)	N
2402	chr2	238220229	238220230	rs4496284	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q37.3	COL6A3	rs4496284-G	0.564563	7E-17		0.0154972	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
2402	chr2	238220229	238220230	rs4496284	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	2q37.3	intergenic	rs4496284-A	0.418	4E-7		0.033	[0.019-0.047] unit decrease	Affymetrix [7947838] (imputed)	N
2402	chr2	238223954	238223955	rs11677932	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	2q37.3	COL6A3	rs11677932-A	0.3157	3E-8		0.0339	[0.022-0.046] unit decrease	Affymetrix [at least 7947838] (imputed)	N
2402	chr2	238223954	238223955	rs11677932	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	2q37.3	COPS8, COL6A3	rs11677932-G		5E-8		0.151	unit increase	Affymetrix [at least 2696785] (imputed)	N
2402	chr2	238227593	238227594	rs12052878	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	2q37.3		rs12052878-G	0.690485	6E-9		0.0462536	[0.03-0.062] decrease	Affymetrix [NR]	N
2402	chr2	238227918	238227919	rs6759927	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q37.3		rs6759927-?	NR	6E-23		0.0204298	[0.016-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
2402	chr2	238232751	238232752	rs1050785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs1050785-?	NR	7E-20				NR [~ 8900000] (imputed)	N
2402	chr2	238236920	238236921	rs6720773	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.3	COL6A3	rs6720773-?		3E-6				Illumina [4322238] (imputed)	N
2402	chr2	238243374	238243375	rs61729843	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs61729843-C	0.957557	1E-9		0.130633	[0.086-0.175] decrease	Affymetrix [11014269] (imputed)	N
2402	chr2	238246520	238246520	rs138526518	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	2q37.3	COL6A3	rs138526518-AC	NR	5E-6		0.18940054	[0.11-0.27] unit decrease	Illumina [> 6200000] (imputed)	N
2402	chr2	238265051	238265052	rs6709577	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6709577-A	0.813143	9E-12		0.0744096	[0.051-0.097] increase	Affymetrix [11014269] (imputed)	N
2402	chr2	238270893	238270894	rs10202497	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	2q37.3	COL6A3	rs10202497-C	0.86	8E-6		1.12	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2402	chr2	238273543	238273544	rs55641746	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs55641746-G	0.777201	2E-24		0.108579	[0.087-0.13] decrease	Affymetrix [11014269] (imputed)	N
2402	chr2	238278141	238278142	rs2645775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.3		rs2645775-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2402	chr2	238280503	238280504	rs146092501	30402224	Yamada Y	2018-09-17	Biomed Rep	Identification of 26 novel loci that confer susceptibility to early-onset coronary artery disease in a Japanese population.	Coronary artery disease	1,482 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	2q37.3	COL6A3	rs146092501-T	0.988	3E-28		25.0		Illumina [up to 244000]	N
2402	chr2	238280503	238280504	rs146092501	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Myocardial infarction	1,152 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	2q37.3	COL6A3	rs146092501-C		1E-24		50.0		Illumina [31245]	N
2402	chr2	238280503	238280504	rs146092501	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	2q37.3	COL6A3	rs146092501-C	0.988	4E-7		1.8181818		Illumina [31276]	N
2402	chr2	238280503	238280504	rs146092501	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	2q37.3	COL6A3	rs146092501-C	0.988	3E-7		4.166667		Illumina [31514]	N
2402	chr2	238280503	238280504	rs146092501	29930801	Yamada Y	2018-05-29	Biomed Rep	Identification of nine genes as novel susceptibility loci for early-onset ischemic stroke, intracerebral hemorrhage, or subarachnoid hemorrhage.	Ischemic stroke	450 Japanese ancestry cases, 5,774 Japanese ancestry controls	NA	2q37.3	COL6A3	rs146092501-C	0.088	1E-8		12.5		Illumina [31245]	N
2403	chr2	238322884	238322885	rs7599762	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	2q37.3	COL6A3	rs7599762-?	NR	1E-8		0.1	[NR] unit decrease	Affymetrix [at least 665000] (imputed)	N
2403	chr2	238336801	238336802	rs6719451	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	2q37.3	NR	rs6719451-C	0.11372652737371	8E-7				NR [9276018] (imputed)	N
2403	chr2	238351346	238351347	rs12476059	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.3	intergenic	rs12476059-T	0.8495	5E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [18391927] (imputed)	N
2403	chr2	238351346	238351347	rs12476059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs12476059-?	NR	2E-16				NR [~ 8900000] (imputed)	N
2403	chr2	238352230	238352230	rs530696125	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q37.3	COL6A3, MLPH	rs530696125-G	0.7659	1E-16		0.1347	[0.1-0.17] unit increase	Affymetrix [~ 11900000] (imputed)	N
2403	chr2	238360707	238360708	rs6431539	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	2q37.3	COL6A3, MLPH	rs6431539-G		2E-8				Affymetrix, Illumina [17972582] (imputed)	N
2403	chr2	238360707	238360708	rs6431539	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q37.3	COL6A3, MLPH	rs6431539-G	0.7494	6E-15		0.1211	[0.09-0.153] unit increase	Affymetrix [~ 11900000] (imputed)	N
2403	chr2	238361861	238361862	rs113594963	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.3		rs113594963-G	0.0102127	1E-10		0.118231	[0.082-0.154] unit increase	Illumina [7980478] (imputed)	N
2403	chr2	238380033	238380034	rs10929234	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10929234-C	0.777255	3E-31		0.120501	[0.099-0.142] increase	Affymetrix [11014269] (imputed)	N
2403	chr2	238383027	238383028	rs7571898	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q37.3	MLPH	rs7571898-T	0.765319	5E-22		0.0209249	[0.017-0.025] unit increase	NR [13737936] (imputed)	N
2403	chr2	238383027	238383028	rs7571898	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q37.3		rs7571898-?	NR	1E-24		0.0234286	[0.019-0.028] unit increase	Affymetrix [20259828] (imputed)	N
2403	chr2	238386285	238386286	rs2325839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q37.3		rs2325839-C	NR	6E-15		0.0119	[0.009-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2403	chr2	238386285	238386286	rs2325839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q37.3		rs2325839-C	0.205258	1E-8		0.0140617	[0.0092-0.0189] unit decrease	Illumina [13479295] (imputed)	N
2403	chr2	238387227	238387228	rs7584330	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	2q37.3	intergenic	rs7584330-C	0.22	3E-9		1.06	[1.02-1.09]	NR [2600000] (imputed)	N
2403	chr2	238389738	238389739	rs73098849	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2q37.3		rs73098849-A	NR	4E-8		1.1122234	NR	Affymetrix [7846216] (imputed)	N
2403	chr2	238395478	238395479	rs58057291	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	2q37.3		rs58057291-?	NR	3E-24		0.0233928	[0.019-0.028] unit increase	Affymetrix [20259828] (imputed)	N
2403	chr2	238395478	238395479	rs58057291	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	2q37.3	MLPH	rs58057291-T	0.766136	3E-9		0.0230066	[0.015-0.031] unit increase	NR [17166351] (imputed)	N
2403	chr2	238396871	238396872	rs880930	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	2q37.3	MLPH	rs880930-?	NA	3E-8		1.58	[1.01-2.15] unit increase	Affymetrix [5541230] (imputed)	N
2403	chr2	238398164	238398165	rs6760842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs6760842-?	NR	5E-24				NR [~ 8900000] (imputed)	N
2403	chr2	238398825	238398826	rs80151891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2q37.3		rs80151891-T	NR	9E-9		0.1144	[0.075-0.153] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
2403	chr2	238411292	238411293	rs74001374	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs74001374-C	NR	3E-11		1.131	[1.09-1.17]	Affymetrix, Illumina [29235255] (imputed)	N
2403	chr2	238411292	238411293	rs74001374	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	2q37.3	NR	rs74001374-C	0.714	4E-9		1.147	[1.10-1.20]	Affymetrix, Illumina [18877980] (imputed)	N
2403	chr2	238417861	238417862	rs76911842	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.3		rs76911842-G	0.0102988	9E-9		0.129707	[0.086-0.174] unit increase	Illumina [7980478] (imputed)	N
2404	chr2	238431434	238431435	rs76364880	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2q37.3		rs76364880-?	NR	4E-6		1.10839	[1.06-1.15]	NR [680312]	N
2404	chr2	238443225	238443226	rs2292884	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs2292884-G	NR	6E-16		1.063	[1.05-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
2404	chr2	238443225	238443226	rs2292884	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q37.3	NR	rs2292884-G	0.24	4E-11		1.06	[1.04-1.08]	Illumina [20370935] (imputed)	N
2404	chr2	238443225	238443226	rs2292884	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	2q37.3	MLPH	rs2292884-G	0.25	4E-8		1.14	[1.09-1.19]	Illumina [571243]	N
2404	chr2	238477390	238477391	rs75985632	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs75985632-C	0.966375	2E-9		0.146721	[0.097-0.196] increase	Affymetrix [11014269] (imputed)	N
2404	chr2	238492154	238492155	rs72990123	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs72990123-A	0.668309	9E-10		0.0551943	[0.036-0.074] increase	Affymetrix [11014269] (imputed)	N
2404	chr2	238499443	238499444	rs2292873	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	RAB17	rs2292873-A	0.061	8E-6	(TG )	0.03	[NR] mg/dL increase	Illumina [899892]	N
2404	chr2	238501375	238501376	rs6431549	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.3	NR	rs6431549-?	NR	8E-7				Affymetrix [NR]	N
2404	chr2	238541791	238541792	rs72991724	32321835	Alic L	2020-04-22	Proc Natl Acad Sci U S A	A genome-wide association study identifies key modulators of complement factor H binding to malondialdehyde-epitopes.	Complement factor H binding to malondialdehyde	934 European ancestry individuals	NA	2q37.3	NR	rs72991724-?		1E-6				Illumina [4278941] (imputed)	N
2404	chr2	238548774	238548775	rs114768057	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	2q37.3	LRRFIP1	rs114768057-A	0.016202919462781	7E-6	(F_Sutterellaceae_HB)	1.30071	[0.73-1.87] unit decrease	Illumina [7711310] (imputed)	N
2405	chr2	238567143	238567144	rs145938855	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	2q37.3		rs145938855-A	0.01751	1E-5		1.996	[1.47-2.71]	Affymetrix [7975321] (imputed)	N
2405	chr2	238628508	238628509	rs6740706	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	2q37.3	LRRFIP1	rs6740706-?	0.8	2E-7	(male)	1.6393442	[1.35-1.96]	Illumina [5595657] (imputed)	N
2405	chr2	238628912	238628913	rs11889535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs11889535-T	0.76289	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
2405	chr2	238628912	238628913	rs11889535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q37.3	NR	rs11889535-T	0.771244	2E-13		0.016878	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2405	chr2	238667551	238667552	rs2279639	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	2q37.3	NR	rs2279639-T	0.0382	1E-7		1.0005	[0.63-1.37] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2405	chr2	238670791	238670792	rs3769053	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	2q37.3	NR	rs3769053-T	0.0689	9E-7		1.0596	[0.64-1.48] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
2405	chr2	238672424	238672425	rs11680012	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	2q37.3	NR	rs11680012-C	0.9575	1E-7		1.327	[0.84-1.82] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
2405	chr2	238672424	238672425	rs11680012	23505185	Plourde M	2012-06-28	Obesity (Silver Spring)	A variant in the LRRFIP1 gene is associated with adiposity and inflammation.	Adiposity	928 French Canadian individuals	NA	2q37.3	LRRFIP1	rs11680012-C	0.05	4E-6	(TAT)	0.581	[NR] cm2 increase	Illumina [543714]	N
2406	chr2	238690423	238690424	rs13411625	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q37.3	LRRFIP1	rs13411625-A	0.783506	1E-8		0.0135498	[0.0089-0.0182] unit increase	Affymetrix [NR] (imputed)	N
2406	chr2	238753702	238753703	rs138586319	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	2q37.3	intergenic	rs138586319-?	NR	4E-6		1.537	[0.74-2.33] unit decrease	Illumina [at least 13000000] (imputed)	N
2406	chr2	238766130	238766131	rs3754705	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	2q37.3	RBM44, RAMP1	rs3754705-G	0.36	8E-6		57.961136	[32.47-83.45] kcal/day decrease	Affymetrix [491265]	N
2406	chr2	238769679	238769680	rs3769050	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.3	NR	rs3769050-?	NR	3E-31				Affymetrix [NR]	N
2407	chr2	238817052	238817052	rs570662154	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	2q37.3	NR	rs570662154-?	NR	7E-6		0.03359	[0.019-0.048] unit decrease	Affymetrix [9658292] (imputed)	N
2407	chr2	238822160	238822161	rs75026491	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	2q37.3		rs75026491-?	NR	9E-6		0.279	[0.16-0.4] unit decrease	Illumina [5082878] (imputed)	N
2407	chr2	238822330	238822331	rs10185142	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	RAMP1	rs10185142-A	0.216	8E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
2407	chr2	238859987	238859988	rs76950125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q37.3		rs76950125-G	NR	8E-11		0.0111	[0.0078-0.0144] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2407	chr2	238864451	238864452	rs74387604	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	2q37.3	UBE2F-SCLY	rs74387604-C	NR	3E-9		0.557	[0.37-0.74] unit increase	NR [11024754] (imputed)	N
2407	chr2	238869883	238869884	rs6723077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.3		rs6723077-T	0.450603	2E-10		0.014179366	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
2407	chr2	238869883	238869884	rs6723077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.3		rs6723077-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2407	chr2	238873672	238873673	rs58964929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q37.3		rs58964929-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2407	chr2	238916747	238916748	rs2326005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs2326005-A	0.449858	9E-10				Affymetrix, Illumina [19872809] (imputed)	N
2407	chr2	238916747	238916748	rs2326005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q37.3	NR	rs2326005-A	0.44367	5E-11		0.01311	[0.0092-0.017] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2407	chr2	238930694	238930695	rs74917072	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	2q37.3		rs74917072-?	NR	5E-7	(overall)	1.25		Illumina [11595112] (imputed)	N
2407	chr2	238936091	238936092	rs189831279	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	2q37.3	UBE2F, UBE2F-SCLY	rs189831279-A	0.9981	3E-6		1.1899	[0.69-1.69] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2408	chr2	238959049	238959050	rs821492	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q37.3	Intergenic	rs821492-?		3E-6		1.098901	[1.06-1.15]	Illumina [7645193] (imputed)	N
2408	chr2	238990387	238990388	rs3210400	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	2q37.3	Intergenic	rs3210400-G	0.578	1E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2408	chr2	238991559	238991560	rs2278743	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	2q37.3		rs2278743-C	NR	3E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2408	chr2	238994675	238994676	rs2264132	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs2264132-T	0.2091	8E-11	(SCLY)	0.0162	NR unit increase	Illumina [1671387] (imputed)	N
2408	chr2	238997724	238997725	rs62195997	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	2q37.3	Intergenic	rs62195997-A	0.5788	5E-10	(MTAG)	0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2408	chr2	238997724	238997725	rs62195997	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	2q37.3	Intergenic	rs62195997-A	0.5779	6E-13	(MTAG)	0.012	[0.0087-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2408	chr2	238999882	238999883	rs1128552	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs1128552-C	0.223	4E-10	(SCLY)	0.01534	NR unit increase	Illumina [1671387] (imputed)	N
2408	chr2	239006649	239006650	rs11682046	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs11682046-C	0.4652	7E-9	(SCLY)	0.01157	NR unit decrease	Illumina [1671387] (imputed)	N
2408	chr2	239026117	239026118	rs867373148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs867373148-C	0.3031	7E-9	(SCLY)	0.01309	NR unit increase	Illumina [1671387] (imputed)	N
2408	chr2	239034872	239034872	rs55760814	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs55760814-G	0.4669	1E-9	(SCLY)	0.01212	NR unit increase	Illumina [1671387] (imputed)	N
2408	chr2	239053044	239053045	rs139628543	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	2q37.3	KLHL30	rs139628543-C	0.06	2E-6		0.75	[0.46-1.04] unit increase	Illumina [~ 31000000] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q37.3		rs13007705-T	NR	2E-19		0.0183	[0.014-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	2q37.3	ERFE	rs13007705-T	0.425	1E-12		0.033	[0.024-0.042] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	2q37.3	ERFE	rs13007705-T	0.425	2E-12		0.029	[0.021-0.037] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	2q37.3	FAM132B	rs13007705-T	0.44447	3E-12		0.015630376	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	2q37.3	FAM132B	rs13007705-T	0.444394	3E-21		0.0215133	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q37.3	FAM132B	rs13007705-T	0.444448	6E-26		0.023411931	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q37.3	FAM132B	rs13007705-T	0.444478	6E-13		0.016054962	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs13007705-C	0.553324	3E-14				Affymetrix, Illumina [22063850] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	2q37.3	NR	rs13007705-C	0.553474	1E-16		0.015897	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs13007705-T	0.477338	5E-12				Affymetrix, Illumina [21126107] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q37.3	NR	rs13007705-T	0.445355	1E-11		0.01371	[0.0097-0.0177] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs13007705-T	0.479094	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q37.3	NR	rs13007705-T	0.44697	9E-19		0.016649	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	2q37.3		rs13007705-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2408	chr2	239069195	239069196	rs13007705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q37.3		rs13007705-?	NR	2E-29				NR [~ 8900000] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	2q37.3		rs6747952-C	0.556	1E-13		0.08	[-0.1--0.06] % decrease	Affymetrix [NR] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs6747952-T	0.475458	7E-27				Affymetrix, Illumina [24246363] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	2q37.3	NR	rs6747952-T	0.446864	3E-29		0.020787	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs6747952-T	0.476948	7E-36				Affymetrix, Illumina [20825802] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q37.3	NR	rs6747952-T	0.445572	6E-36		0.024363	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2408	chr2	239069925	239069926	rs6747952	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	2q37.3	FAM132B	rs6747952-T	0.4455	3E-10		0.02213425	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2408	chr2	239073502	239073503	rs4663852	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q37.3		rs4663852-A	NR	5E-8		0.0105	[0.0068-0.0142] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2408	chr2	239074664	239074665	rs11689193	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q37.3	ILKAP	rs11689193-C		3E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2409	chr2	239093373	239093373	rs35676364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q37.3		rs35676364-GT	NR	3E-14		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2409	chr2	239093373	239093373	rs35676364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	2q37.3	ILKAP	rs35676364-GT	0.4828	1E-9		0.02197751	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
2409	chr2	239093373	239093373	rs35676364	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q37.3	ILKAP	rs35676364-GT	0.4829	2E-15		0.02864316	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2409	chr2	239094140	239094140	rs34992484	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	2q37.3		rs34992484-TA	NR	6E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2409	chr2	239095421	239095422	rs12472274	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	2q37.3	ILKAP	rs12472274-?	NR	2E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
2409	chr2	239101656	239101656	rs35113840	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	2q37.3	ILKAP	rs35113840-GA	0.2259	5E-10		0.02636336	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2409	chr2	239140024	239140025	rs114769095	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q37.3	LOC151174	rs114769095-C	0.0242	1E-27		1.1441		Affymetrix [11880941] (imputed)	N
2409	chr2	239144600	239144601	rs57690685	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	LOC151174, HES6	rs57690685-A	0.9895	4E-10		0.0517931	[0.036-0.068] unit decrease	Affymetrix [11880941] (imputed)	N
2409	chr2	239149569	239149570	rs960783	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	HES6PER2	rs960783-T	0.0442	1E-26		0.0440497	[0.036-0.052] unit decrease	Affymetrix [11880941] (imputed)	N
2409	chr2	239149569	239149570	rs960783	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q37.3		rs960783-?	NR	6E-18				NR [~ 8900000] (imputed)	N
2409	chr2	239150814	239150815	rs4663866	25248455	Ek WE	2014-09-23	Gut	Exploring the genetics of irritable bowel syndrome: a GWA study in the general population and replication in multinational case-control cohorts.	Irritable bowel syndrome	534 European ancestry cases, 4,932 European ancestry controls	1,718 European ancestry cases, 1,793 European ancestry controls	2q37.3	HES6	rs4663866-C	0.10	5E-6		1.45	[1.18-1.89]	Illumina [1253036] (imputed)	N
2409	chr2	239152869	239152870	rs80261926	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	PER2	rs80261926-T	0.0188	4E-27		0.0672728	[0.055-0.079] unit increase	Affymetrix [11880941] (imputed)	N
2409	chr2	239161956	239161957	rs35333999	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q37.3		rs35333999-T	0.04295	5E-19		0.047	[0.037-0.057] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2409	chr2	239161956	239161957	rs35333999	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2q37.3	NR	rs35333999-T	0.04295	3E-9		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
2409	chr2	239161956	239161957	rs35333999	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	2q37.3	PER2	rs35333999-T	0.043	9E-6		1.21	[1.11-1.32]	Affymetrix [73355677] (imputed)	N
2409	chr2	239161956	239161957	rs35333999	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	2q37.3	PER2	rs35333999-T	NR	8E-8	(conditioned on rs11895698)	0.059	[0.037-0.081] unit increase	Affymetrix [~ 73355677] (imputed)	N
2409	chr2	239161956	239161957	rs35333999	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	2q37.3	PER2	rs35333999-T	0.043	8E-8		0.059	[0.037-0.081] unit increase	Affymetrix [~ 73355677] (imputed)	N
2409	chr2	239177685	239177686	rs116298301	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2q37.3	NR	rs116298301-T	0.02567	2E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
2409	chr2	239187208	239187209	rs74508725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs74508725-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2409	chr2	239194692	239194693	rs77942338	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q37.3		rs77942338-T	0.97369	1E-16		0.056	[0.042-0.07] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2409	chr2	239194836	239194837	rs58574366	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	PER2	rs58574366-A	0.0498	1E-8		0.0221134	[0.014-0.03] unit decrease	Affymetrix [11880941] (imputed)	N
2410	chr2	239222375	239222376	rs62194948	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q37.3	NR	rs62194948-C	0.275	5E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2410	chr2	239231476	239231477	rs7599697	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	2q37.3	NR	rs7599697-C	0.6417	5E-9		1.0373445	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
2410	chr2	239242966	239242967	rs12477345	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q37.3		rs12477345-T	0.6316	2E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2410	chr2	239276277	239276278	rs74409360	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs74409360-C	0.92	2E-8		0.0088	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
2410	chr2	239276277	239276278	rs74409360	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	2q37.3	TRAF3IP1	rs74409360-C	0.92	2E-6		0.0071	NR unit increase	Affymetrix [at least 8002429] (imputed)	N
2410	chr2	239302567	239302568	rs74979875	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs74979875-G	0.914	1E-10		0.1488	[0.1-0.198] unit increase	Affymetrix [~ 11900000] (imputed)	N
2410	chr2	239306267	239306268	rs3739070	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs3739070-A	0.9168	1E-8		0.1354	[0.085-0.186] unit increase	Affymetrix [~ 11900000] (imputed)	N
2410	chr2	239306267	239306268	rs3739070	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	2q37.3	TRAF3IP1	rs3739070-A		6E-6	(Crypts)	0.16	[0.10-0.22] unit decrease	Illumina [274604] (imputed)	N
2410	chr2	239306267	239306268	rs3739070	21835309	Larsson M	2011-08-12	Am J Hum Genet	GWAS findings for human iris patterns: associations with variants in genes that influence normal neuronal pattern development.	Iris characteristics	2,121 European ancestry individuals	499 European ancestry adolescent twins and siblings, 73 European ancestry adult individuals	2q37.3	TRAF3IP1	rs3739070-A		2E-12	(Furrows)	0.25	[0.19-0.31] unit increase	Illumina [274604] (imputed)	N
2410	chr2	239307112	239307113	rs77008212	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		2q37.3	TRAF3IP1	rs77008212-A	0.913	5E-7		0.026	[0.016-0.036] dioptres decrease	NR [5900115] (imputed)	N
2410	chr2	239308048	239308049	rs11900963	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q37.3		rs11900963-A	0.91376	3E-32		0.045	[0.037-0.053] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2410	chr2	239311368	239311369	rs57435966	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs57435966-?	NR	7E-9		0.1311	[0.087-0.175] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
2410	chr2	239311368	239311369	rs57435966	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs57435966-C	0.913	6E-9		0.132	[0.087-0.177] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2410	chr2	239311504	239311505	rs80271258	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q37.3	TRAF3IP1, ASB1	rs80271258-C	0.9156	4E-43		1.0913455		Affymetrix [11880941] (imputed)	N
2410	chr2	239311504	239311505	rs80271258	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	TRAF3IP1, ASB1	rs80271258-C	0.9156	4E-43		1.0935179		Affymetrix [11880941] (imputed)	N
2410	chr2	239311504	239311505	rs80271258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q37.3		rs80271258-?	NR	7E-26				NR [~ 8900000] (imputed)	N
2410	chr2	239316042	239316043	rs75804782	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	2q37.3	PER2	rs75804782-T	0.88	4E-10		1.09	[1.06-1.12]	NR [16760980] (imputed)	N
2410	chr2	239316042	239316043	rs75804782	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	2q37.3	PER2	rs75804782-T	0.88	1E-14		0.03	[0.018-0.042] unit increase	NR [16760980] (imputed)	N
2410	chr2	239316559	239316560	rs61332075	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	2q37.3	TRAF3IP1, ASB1	rs61332075-C	0.12	3E-10		0.038	[0.026-0.05] unit increase	Affymetrix [27624732] (imputed)	N
2410	chr2	239317691	239317692	rs55694368	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q37.3	PER2	rs55694368-G	0.93	3E-9		1.1627907		Illumina [7427422] (imputed)	N
2410	chr2	239320504	239320505	rs548179	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	2q37.3	NR	rs548179-?	NR	5E-7		0.102394	[0.063-0.142] unit increase	NR [13958389] (imputed)	N
2410	chr2	239321117	239321118	rs7596847	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	2q37.3	TRAF3IP1, ASB1	rs7596847-?		6E-16				Affymetrix, Illumina [NR] (imputed)	N
2410	chr2	239322858	239322859	rs188004381	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	TRAF3IP1, ASB1	rs188004381-A	0.0423	9E-14		0.0313766	[0.023-0.04] unit decrease	Affymetrix [11880941] (imputed)	N
2410	chr2	239324209	239324210	rs72983853	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q37.3	ASB1	rs72983853-C	0.88	3E-8	(conditional on rs62191105)	1.09	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
2410	chr2	239335400	239335401	rs473651	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	2q37.3	ASB1	rs473651-A	0.38	4E-6		1.2820514		Illumina [4903804] (imputed)	N
2411	chr2	239338494	239338495	rs11895698	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	2q37.3	ASB1	rs11895698-T	0.14	1E-8		0.035	[0.023-0.047] unit increase	Affymetrix [~ 73355677] (imputed)	N
2411	chr2	239349361	239349362	rs3769124	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	ASB1	rs3769124-G	NR	7E-8	(FEV1)	0.047	[0.029-0.065] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2411	chr2	239363772	239363773	rs55986470	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	2q37.3	NR	rs55986470-G	0.15	2E-9		0.037	[0.025-0.049] unit increase	Affymetrix [at least 12428592] (imputed)	N
2411	chr2	239365455	239365456	rs3891424	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q37.3	NR	rs3891424-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
2411	chr2	239365455	239365456	rs3891424	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	2q37.3	NA	rs3891424-A	0.0527	4E-10		0.0278	[0.019-0.036] unit decrease	NR [~ 27400000] (imputed)	N
2411	chr2	239412924	239412925	rs72993073	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q37.3	ASB1, TWIST2	rs72993073-G	0.874	8E-36		1.0690614		Affymetrix [11880941] (imputed)	N
2411	chr2	239423097	239423098	rs4483990	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	2q37.3	NR	rs4483990-C	0.1549	6E-13		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
2411	chr2	239430581	239430582	rs58568091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs58568091-?	NR	6E-19				NR [~ 8900000] (imputed)	N
2411	chr2	239441307	239441308	rs6710301	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	TRAF3IP1	rs6710301-A	0.1492	3E-11		0.0223	[0.016-0.029] unit increase	Affymetrix [19819130] (imputed)	N
2411	chr2	239441307	239441308	rs6710301	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	TRAF3IP1	rs6710301-A	0.1492	9E-13		0.0235	[0.017-0.03] unit increase	Affymetrix [19819130] (imputed)	N
2411	chr2	239441307	239441308	rs6710301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.3		rs6710301-?	NR	1E-12				NR [~ 8900000] (imputed)	N
2411	chr2	239452381	239452382	rs111706465	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	2q37.3	NR	rs111706465-?	NR	2E-8				Illumina [7427422] (imputed)	N
2412	chr2	239483445	239483446	rs6717684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs6717684-?	NR	5E-17				NR [~ 8900000] (imputed)	N
2412	chr2	239486472	239486473	rs1868264	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.3	TRAF3IP1	rs1868264-?	NR	5E-6	(betaine)	0.19203646	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
2412	chr2	239495681	239495682	rs12615081	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs12615081-A	0.460476	6E-29		0.0345005	[0.028-0.041] unit increase	NR [19129689] (imputed)	N
2412	chr2	239499334	239499335	rs1510510	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	2q37.3	HDAC4, ASB1	rs1510510-?	NR	7E-6		1.3	[1.16-1.45]	Illumina [254145]	N
2412	chr2	239501831	239501832	rs113941845	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q37.3	ASB1	rs113941845-A		4E-6		1.24	[1.02-1.51]	Affymetrix, Illumina [NR] (imputed)	N
2412	chr2	239517094	239517095	rs78440618	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	2q37.3	ASB1, TWIST2	rs78440618-A	0.8935	3E-18		1.0504		Affymetrix [11880941] (imputed)	N
2412	chr2	239521962	239521963	rs55775132	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	2q37.3	ASB1, TWIST2	rs55775132-G	NR	1E-6		0.256936	[0.15-0.36] unit increase	Illumina [at least 950000] (imputed)	N
2412	chr2	239523749	239523753	rs10534441	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	2q37.3	NR	rs10534441-T	0.07613	2E-6		0.9005	[0.34-1.47] unit increase	Illumina [at least 567677] (imputed)	N
2412	chr2	239553367	239553368	rs10203711	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	2q37.3	NR	rs10203711-?	NR	3E-9				Illumina [at least 7383741] (imputed)	N
2412	chr2	239561887	239561888	rs1810138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q37.3		rs1810138-C	NR	1E-10		0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2413	chr2	239604969	239604970	rs6431620	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	LINC01107	rs6431620-T	0.7887	1E-10		0.0185	[0.013-0.024] unit increase	Affymetrix [19819130] (imputed)	N
2413	chr2	239604969	239604970	rs6431620	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	LINC01107	rs6431620-T	0.7887	2E-12		0.0201	[0.014-0.026] unit increase	Affymetrix [19819130] (imputed)	N
2413	chr2	239614257	239614258	rs13410025	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q37.3	TWIST2	rs13410025-A	0.24	3E-7	(conditional on rs62191105)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
2413	chr2	239625595	239625596	rs74001718	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs74001718-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2413	chr2	239635883	239635884	rs56168014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs56168014-?	NR	3E-17				NR [~ 8900000] (imputed)	N
2413	chr2	239638299	239638300	rs4545955	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	2q37.3	intergenic	rs4545955-?		7E-6				NR [~ 3000000] (imputed)	N
2413	chr2	239647671	239647672	rs74563367	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	2q37.3		rs74563367-A	0.13	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
2413	chr2	239666709	239666710	rs539366028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q37.3	AC113618.1	rs539366028-T	NR	6E-9		0.0495825	[0.033-0.066] unit decrease	Affymetrix [319769] (imputed)	N
2413	chr2	239666709	239666710	rs539366028	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q37.3	AC113618.1	rs539366028-T	NR	8E-9		0.0492725	[0.033-0.066] unit decrease	Affymetrix [319769] (imputed)	N
2413	chr2	239671605	239671606	rs4643485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	AC113618.1	rs4643485-G	NR	1E-8		0.0161232	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
2413	chr2	239674328	239674329	rs12466434	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q37.3	NR	rs12466434-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2413	chr2	239680991	239680992	rs9287636	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q37.3	TWIST2	rs9287636-G	0.3109	3E-12		1.06	NR	Affymetrix [9154080] (imputed)	N
2413	chr2	239694630	239694631	rs9287638	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	NR	rs9287638-A	NR	7E-37		0.08	NR unit increase	NR [NR] (imputed)	N
2413	chr2	239694630	239694631	rs9287638	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	2q37.3	HDAC4	rs9287638-A	0.562	1E-12		1.31	[1.21-1.41]	Affymetrix, Illumina [2391230] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	2q37.3	TWIST2	rs11684254-C	0.657808	3E-13		1.0338954	NR	Affymetrix [~ 9600000] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q37.3		rs11684254-?	NR	9E-34				NR [~ 8900000] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs11684254-?	NR	8E-119				NR [~ 8900000] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs11684254-G	0.342736	1E-146		0.0881609	[0.081-0.095] unit increase	NR [19129689] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	2q37.3	TWIST2, LINC01107	rs11684254-C	NR	1E-39		0.192886	[0.16-0.22] unit increase	Affymetrix [27512692] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	2q37.3		rs11684254-G	0.34	1E-39		0.29	[0.25-0.33] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	LOC100287387, TWIST2	rs11684254-G	NR	1E-40		0.0861109	NR unit increase	NR [NR] (imputed)	N
2413	chr2	239695892	239695893	rs11684254	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	2q37.3	ASB1, TWIST2	rs11684254-?	NR	2E-37		1.35	[1.289-1.414]	Illumina [13436641] (imputed)	N
2413	chr2	239703910	239703911	rs57613913	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	NR	rs57613913-C	NR	6E-19		0.0616606	NR unit decrease	NR [NR] (imputed)	N
2413	chr2	239719322	239719323	rs35419826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q37.3	AC144525.1	rs35419826-A	NR	1E-9		0.0220744	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2413	chr2	239719322	239719323	rs35419826	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q37.3	AC144525.1	rs35419826-A	NR	2E-9		0.0218839	[0.015-0.029] unit decrease	Affymetrix [319769] (imputed)	N
2413	chr2	239719322	239719323	rs35419826	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q37.3	NR	rs35419826-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
2413	chr2	239729256	239729257	rs59712316	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	NR	rs59712316-C	NR	9E-18		0.0559916	NR unit decrease	NR [NR] (imputed)	N
2414	chr2	239736363	239736364	rs9750952	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	2q37.3	NR	rs9750952-C	0.77	7E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix [2446094] (imputed)	N
2414	chr2	239736363	239736364	rs9750952	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	2q37.3	NR	rs9750952-C	0.77	5E-8				Affymetrix [2446094] (imputed)	N
2414	chr2	239752766	239752767	rs56116740	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs56116740-C	0.348922	5E-13		0.0244151	[0.018-0.031] unit increase	NR [19129689] (imputed)	N
2414	chr2	239769884	239769885	rs146095395	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	2q37.3		rs146095395-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2414	chr2	239769884	239769885	rs146095395	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	TWIST2	rs146095395-T	NR	7E-12		0.0606655	NR unit increase	NR [NR] (imputed)	N
2414	chr2	239780841	239780842	rs138714031	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	2q37.3	NR	rs138714031-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
2414	chr2	239790695	239790695	rs143351834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	2q37.3	TWIST2	rs143351834-GTC	NR	4E-9		0.0231812	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
2414	chr2	239790695	239790695	rs143351834	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	2q37.3	TWIST2	rs143351834-GTC	NR	3E-9		0.0234342	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
2414	chr2	239799963	239799964	rs35433309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs35433309-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2414	chr2	239800543	239800544	rs62191087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs62191087-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2414	chr2	239835210	239835211	rs4078406	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (phenylthiocarbamide) in obesity with metabolic syndrome	372 individuals	NA	2q37.3	intergenic	rs4078406-T	0.422	4E-7		0.505	[0.31-0.7] unit decrease	Illumina [622468]	N
2414	chr2	239839783	239839784	rs144363312	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	2q37.3	NR	rs144363312-?	NR	3E-6	(AA)	1.5622	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2414	chr2	239839783	239839784	rs144363312	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	2q37.3	NR	rs144363312-?	NR	2E-8	(AA)	1.6807	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2414	chr2	239857752	239857753	rs62191099	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	2q37.3	FLJ43879	rs62191099-A	0.3	5E-6		1.25	[1.17-1.33]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
2415	chr2	239864731	239864732	rs4507125	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	2q37.3	HDAC4	rs4507125-A	0.7864	4E-9		0.1244	[0.083-0.166] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
2415	chr2	239865054	239865055	rs4511740	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	2q37.3		rs4511740-G	NR	3E-6		4.648025	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
2415	chr2	239872703	239872704	rs62191105	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q37.3	NR	rs62191105-T	0.19	9E-10		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
2415	chr2	239872703	239872704	rs62191105	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q37.3	NR	rs62191105-T	0.19	3E-9			[NR]	Affymetrix [9886854] (imputed)	N
2415	chr2	239872703	239872704	rs62191105	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	2q37.3	NR	rs62191105-T	0.19	1E-9		0.91	[0.88-0.94]	Affymetrix [9886854] (imputed)	N
2415	chr2	239872703	239872704	rs62191105	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q37.3	TWIST2	rs62191105-C	0.8	3E-12		1.09	[1.07-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
2415	chr2	239877147	239877148	rs12477314	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	2q37.3		rs12477314-T	0.2014	2E-9		0.10491803	[0.071-0.139] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
2415	chr2	239877147	239877148	rs12477314	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	2q37.3	HDAC4	rs12477314-?	NR	2E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
2415	chr2	239877147	239877148	rs12477314	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	HDAC4	rs12477314-T	0.20	2E-12	(FEV1/FVC)	0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2415	chr2	239877147	239877148	rs12477314	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	2q37.3	HDAC4	rs12477314-T	0.20	1E-7	(FEV1)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2415	chr2	239878078	239878079	rs4073751	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	2q37.3	FLJ43879, HDAC4	rs4073751-?	NR	5E-6				Illumina [NR]	N
2415	chr2	239881308	239881309	rs4308141	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	2q37.3	FLJ43879	rs4308141-C	0.8011	6E-11		0.0206	[0.014-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
2415	chr2	239881308	239881309	rs4308141	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	FLJ43879	rs4308141-C	0.8011	4E-59		0.0484	[0.043-0.054] unit decrease	Affymetrix [19819130] (imputed)	N
2415	chr2	239881308	239881309	rs4308141	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	FLJ43879	rs4308141-C	0.8011	3E-22		0.0284	[0.023-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
2415	chr2	239881308	239881309	rs4308141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs4308141-?	NR	2E-82				NR [~ 8900000] (imputed)	N
2415	chr2	239893782	239893783	rs35945722	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	2q37.3	NR	rs35945722-A	0.18	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
2415	chr2	239893782	239893783	rs35945722	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	2q37.3	NR	rs35945722-A	0.18	7E-7		0.91	[0.87-0.94]	Affymetrix [9886854] (imputed)	N
2415	chr2	239896860	239896861	rs10199914	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	2q37.3	intergenic	rs10199914-A	0.6285	4E-9		0.0112	[0.0075-0.0149] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2415	chr2	239923514	239923515	rs3935695	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	2q37.3	HDAC4	rs3935695-C		7E-6	(EA)	1.27	[1.02-1.59]	Affymetrix, Illumina [NR] (imputed)	N
2415	chr2	239949680	239949681	rs4075018	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	2q37.3	HDAC4	rs4075018-G	0.79404	6E-10		0.0140015	[0.0096-0.0184] unit decrease	NR [13737936] (imputed)	N
2415	chr2	239949680	239949681	rs4075018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs4075018-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2415	chr2	239949680	239949681	rs4075018	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs4075018-A	0.205144	3E-25		0.0391919	[0.032-0.047] unit increase	NR [19129689] (imputed)	N
2415	chr2	239949740	239949741	rs150471162	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-826 abundance in stool	5,959 Finnish ancestry individuals	NA	2q37.3		rs150471162-T	0.0101334	2E-9		0.231396	[0.16-0.31] unit increase	Illumina [7980478] (imputed)	N
2415	chr2	239949822	239949823	rs12185725	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	2q37.3		rs12185725-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2415	chr2	239949822	239949823	rs12185725	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	2q37.3	HDAC4	rs12185725-G	0.1947	2E-11		1.068	NR	Affymetrix [9154080] (imputed)	N
2415	chr2	239949822	239949823	rs12185725	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		2q37.3	NR	rs12185725-G	NR	1E-10		0.0507895	NR unit increase	NR [NR] (imputed)	N
2415	chr2	239950152	239950153	rs62189261	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs62189261-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2415	chr2	239982875	239982876	rs62189527	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	2q37.3	HDAC4	rs62189527-C		7E-7	(men)	0.32	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2416	chr2	240014773	240014774	rs4852018	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs4852018-A	0.459875	5E-9		0.0179154	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
2416	chr2	240020621	240020622	rs4852019	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.3	ASB1	rs4852019-?	NR	9E-7	(anthranilic acid)	0.16454206	[0.099-0.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
2416	chr2	240030483	240030484	rs3791406	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	2q37.3	OR6B2	rs3791406-A		6E-6		0.069	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
2416	chr2	240063220	240063221	rs148639441	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	2q37.3		rs148639441-C	0.988046	5E-6		0.0463195	[0.022-0.071] unit increase	Illumina [7666802] (imputed)	N
2416	chr2	240064138	240064139	rs3791478	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q37.3	HDAC4	rs3791478-T	0.890549	3E-8		0.0125091	[0.0081-0.0169] unit increase	Affymetrix [12370749]	N
2416	chr2	240065355	240065356	rs11677464	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	2q37.3	AC017028.1	rs11677464-A	0.9043271	1E-9				Affymetrix, Illumina [NR] (imputed)	N
2416	chr2	240075589	240075590	rs3791501	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	2q37.3	NR	rs3791501-C	0.438	1E-6	(IFNalpha_CXCL10_of_CD20p)			Illumina [5084123] (imputed)	N
2416	chr2	240076001	240076002	rs55875066	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	2q37.3	HDAC4	rs55875066-?	NR	1E-9				Affymetrix, Illumina [7850345] (imputed)	N
2416	chr2	240076001	240076002	rs55875066	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	2q37.3	HDAC4	rs55875066-?	NR	8E-7	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
2416	chr2	240085673	240085674	rs13010577	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs13010577-C	0.426856	2E-10		0.0199069	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
2416	chr2	240109476	240109477	rs3791553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs3791553-?	NR	7E-10				NR [~ 8900000] (imputed)	N
2416	chr2	240112971	240112972	rs3791556	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	2q37.3	HDAC4, MGC16025	rs3791556-A		8E-6	(Modelling analysis)	1.08	[1.04-1.11]	NR [1252901] (imputed)	N
2417	chr2	240201445	240201446	rs4852042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	2q37.3		rs4852042-A	NR	1E-8		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2417	chr2	240205495	240205496	rs62182100	30287865	Pinar A	2018-10-04	Transl Psychiatry	Genome-wide association study reveals novel genetic locus associated with intra-individual variability in response time.	Intra-individual response time variability (selective attention)	857 European ancestry individuals	NA	2q37.3	HDAC4	rs62182100-G	0.05525	3E-8	(standard deviation)	0.63	unit increase	Illumina [5408162] (imputed)	N
2417	chr2	240205495	240205496	rs62182100	30287865	Pinar A	2018-10-04	Transl Psychiatry	Genome-wide association study reveals novel genetic locus associated with intra-individual variability in response time.	Intra-individual response time variability (selective attention)	857 European ancestry individuals	NA	2q37.3	HDAC4	rs62182100-G	0.05525	3E-8	(intra-individual coefficient of variation)	0.62	[NR] unit increase	Illumina [5408162] (imputed)	N
2417	chr2	240208153	240208154	rs2048765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q37.3	HDAC4	rs2048765-A	0.65	2E-6	(Japanese)	0.3691	[0.22-0.52] unit decrease	Illumina [6200000] (imputed)	N
2417	chr2	240208153	240208154	rs2048765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q37.3	HDAC4	rs2048765-A	0.6489	2E-7	(Japanese)	0.2895	[0.18-0.4] unit decrease	Illumina [6200000] (imputed)	N
2417	chr2	240208153	240208154	rs2048765	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	2q37.3	HDAC4	rs2048765-A	0.6489	7E-7	(Japanese)	0.2482	[0.15-0.35] unit decrease	Illumina [6200000] (imputed)	N
2417	chr2	240208153	240208154	rs2048765	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	2q37.3	HDAC4	rs2048765-?	NR	5E-8		0.02185	[0.014-0.03] unit increase novel	Illumina [6108953] (imputed)	N
2417	chr2	240217036	240217037	rs11883563	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	2q37.3	NDUFA10	rs11883563-?	NR	4E-6	(ornithine)	1.2645266	[0.73-1.8] unit increase	Affymetrix [at least 2500000] (imputed)	N
2417	chr2	240221481	240221482	rs13389265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q37.3		rs13389265-T	NR	2E-9		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
2417	chr2	240221481	240221482	rs13389265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	2q37.3		rs13389265-T	NR	7E-11		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
2417	chr2	240234900	240234901	rs10200850	25948407	Kertai MD	2015-05-06	BMJ Open	Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.	Perioperative myocardial infarction in coronary artery bypass surgery	112 cases, 1,321 controls	113 European ancestry cases, 509 European ancestry controls	2q37.3	HDAC4	rs10200850-?	NR	8E-6		2.23	[1.57-3.17]	Illumina [534390]	N
2417	chr2	240245536	240245537	rs59022814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs59022814-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2418	chr2	240265616	240265617	rs6706275	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.3		rs6706275-T	0.3246	3E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2418	chr2	240267304	240267305	rs62182135	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	2q37.3		rs62182135-A	0.3305	8E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2418	chr2	240267304	240267305	rs62182135	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	2q37.3	HDAC4	rs62182135-C	0.6715	1E-12		1.0244951		Affymetrix [11880941] (imputed)	N
2418	chr2	240267304	240267305	rs62182135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	2q37.3		rs62182135-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2418	chr2	240285316	240285317	rs10197122	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q37.3	NR	rs10197122-T	0.0721	1E-8		0.002422	[0.0016-0.0033] unit increase	Affymetrix [NR] (imputed)	N
2418	chr2	240312741	240312742	rs4852063	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	2q37.3	HDAC4	rs4852063-A	NR	8E-6	(adjusted for clinical variables)			Illumina [up to 3935887] (imputed)	N
2418	chr2	240321050	240321051	rs72993796	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.3		rs72993796-T	0.8836	1E-8		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2418	chr2	240330993	240330994	rs843451	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	2q37.3	intergenic	rs843451-G	0.742	7E-6	(Ordinal)	0.2849	[0.16-0.41] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2418	chr2	240349094	240349095	rs4241231	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs4241231-?	NR	6E-9				NR [NR]	N
2418	chr2	240349094	240349095	rs4241231	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs4241231-?	NR	3E-9				NR [NR]	N
2418	chr2	240349094	240349095	rs4241231	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs4241231-?	NR	2E-8				NR [NR]	N
2418	chr2	240349094	240349095	rs4241231	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs4241231-?	NR	2E-9				NR [NR]	N
2418	chr2	240349094	240349095	rs4241231	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs4241231-?	NR	2E-9				NR [NR]	N
2418	chr2	240349094	240349095	rs4241231	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	2q37.3	NR	rs4241231-A	0.518	2E-6		0.016557401	[0.0097-0.0234] unit increase	Affymetrix [up to 6544775] (imputed)	N
2419	chr2	240418659	240418660	rs6743931	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	2q37.3	intergenic	rs6743931-?	NR	2E-6	(AIMS)			Affymetrix [492000]	N
2419	chr2	240441157	240441158	rs10174165	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	2q37.3	LOC100132902, FLJ45964	rs10174165-A	0.075	2E-6		2.89	[1.84-4.53]	Illumina [1556551]	N
2419	chr2	240444052	240444053	rs6706785	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	2q37.3	AC079612.1	rs6706785-?		6E-6	(EA, Inherited)	1.91	[1.44-.254]	Illumina [2421290] (imputed)	N
2419	chr2	240444218	240444219	rs11679072	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	2q37.3	FLJ45964	rs11679072-?	NR	6E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
2419	chr2	240473089	240473090	rs186736781	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	2q37.3	NR	rs186736781-T	0.02	6E-7		2.27	1.64-3.13	NR [8482392] (imputed)	N
2419	chr2	240500248	240500249	rs59626274	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	2q37.3	FLJ45964	rs59626274-C	0.64	6E-14		3.846154	[2.7-5.56]	Affymetrix [508192]	N
2420	chr2	240620842	240620843	rs6749693	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	2q37.3	LOC101928111, LOC150935	rs6749693-T	0.3552	1E-5		0.1746	[0.097-0.252] unit decrease	NR [NR] (imputed)	N
2420	chr2	240647605	240647606	rs115080214	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	2q37.3	NR	rs115080214-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
2421	chr2	240687288	240687289	rs10207060	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	LOC150935	rs10207060-A	0.45	6E-6	(Fat free mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
2421	chr2	240736418	240736419	rs12612507	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	2q37.3	NDUFA10	rs12612507-A	0.55	3E-6	(conditional on rs62191105)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
2421	chr2	240745717	240745718	rs4852140	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	LOC150935	rs4852140-A	0.328	8E-6	(Dinner intake )	0.04	[NR] kcal increase	Illumina [899892]	N
2421	chr2	240757344	240757345	rs57297613	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	2q37.3	NR	rs57297613-?	NR	2E-6		0.9016192	[0.86-0.94]	Affymetrix, Illumina [~ 10400000] (imputed)	N
2422	chr2	240843637	240843638	rs12618573	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	2q37.3	intergenic	rs12618573-?	NR	8E-6	(SF6)			Affymetrix [5476100] (imputed)	N
2422	chr2	240866756	240866757	rs61285275	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	2q37.3	NDUFA10	rs61285275-A	NR	4E-6		0.122	[0.071-0.173] unit decrease	Illumina [NR] (imputed)	N
2422	chr2	240900120	240900121	rs13424612	23910658	McRae JF	2013-07-31	Curr Biol	Identification of regions associated with variation in sensitivity to food-related odors in the human genome.	Odorant perception (isobutyraldehyde)	187 European ancestry individuals	Up to 109 Asian ancestry indiviudals	2q37.3	NDUFA10, OR6B2	rs13424612-?		6E-10		6.62	[NR] unit increase	Affymetrix [619656]	N
2423	chr2	240971449	240971450	rs874060	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	2q37.3	NR	rs874060-?	NR	9E-9				Illumina [7760689] (imputed)	N
2423	chr2	241018504	241018505	rs116200762	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	2q37.3	NR	rs116200762-C	0.0673603	9E-6		1.129	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
2423	chr2	241020500	241020501	rs13432025	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		2q37.3	OR9S24P	rs13432025-A	0.016	9E-6		1.464	[0.83-2.1] unit decrease	Illumina [640625] (imputed)	N
2424	chr2	241064375	241064376	rs7606353	30952644	El Charif O	2019-04-05	Clin Cancer Res	Clinical and Genome-Wide Analysis of Cisplatin-Induced Tinnitus Implicates Novel Ototoxic Mechanisms.	Tinnitus in cisplatin-treated testicular cancer	154 European ancestry cases, 608 European ancestry controls	NA	2q37.3	OTOS	rs7606353-G	NR	2E-6		4.2043	[3.61-4.8]	Illumina [7225561] (imputed)	N
2424	chr2	241123545	241123546	rs7605872	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	2q37.3	OTOS	rs7605872-G	NR	4E-8	(k__Bacteria|p__Firmicutes|c__Negativicutes|o__Selenomonadales|f__Veillonellaceae|g__Dialister|s__Dialister_invisus)	5.5063925	NR Z-score increase	Illumina [8100000] (imputed)	N
2424	chr2	241157342	241157343	rs73104194	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs73104194-C	0.01568	2E-9	(ACTN4)	0.3776	NR unit increase	Illumina [1671387] (imputed)	N
2425	chr2	241177041	241177042	rs114949804	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	2q37.3	NR	rs114949804-C	0.01	4E-6		0.7073	[0.41-1.01] unit increase	Illumina [7305641] (imputed)	N
2425	chr2	241231149	241231150	rs4854076	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	2q37.3	NR	rs4854076-?	NR	2E-6				Affymetrix [NR]	N
2425	chr2	241239778	241239779	rs10933588	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	2q37.3	NR	rs10933588-?	NR	3E-6		1.93	[1.72-2.17]	Illumina [539000] (imputed)	N
2425	chr2	241254401	241254402	rs61011046	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs61011046-?	NR	3E-8				NR [NR]	N
2425	chr2	241261466	241261467	rs1814889	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs1814889-?	NR	4E-8				NR [NR]	N
2425	chr2	241262640	241262641	rs6748055	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	2q37.3		rs6748055-?	NR	4E-8				NR [NR]	N
2425	chr2	241285131	241285132	rs74983791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	668 European ancestry cases, 481,244 European ancestry controls, 1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	2q37.3		rs74983791-C	NR	4E-8		0.2666	[0.17-0.36] unit increase	Affymetrix, Illumina [25844469] (imputed)	N
2426	chr2	241308504	241308505	rs1574192	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	2q37.3	GPC1	rs1574192-?	0.38	4E-6				Illumina [302783]	N
2426	chr2	241313159	241313160	rs76710549	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs76710549-T	0.410341	2E-14		0.0242493	[0.018-0.03] unit increase	NR [19129689] (imputed)	N
2426	chr2	241313212	241313213	rs34352794	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	2q37.3	NR	rs34352794-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2426	chr2	241313212	241313213	rs34352794	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	2q37.3		rs34352794-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2426	chr2	241316717	241316718	rs56003038	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs56003038-?	NR	5E-11				NR [~ 8900000] (imputed)	N
2426	chr2	241326700	241326701	rs10933596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs10933596-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2426	chr2	241333756	241333757	rs7583903	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	BMI x SSRI levels interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	2q37.3	GPC1	rs7583903-A	0.02	3E-8		62.78	[40.85-84.71] unit increase	Illumina [NR] (imputed)	N
2426	chr2	241364668	241364669	rs140870884	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q37.3	NR	rs140870884-?	NR	5E-7		0.0084947	[0.0052-0.0118] unit increase	Affymetrix [805426] (imputed)	N
2426	chr2	241378195	241378196	rs73102036	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	2q37.3	NR	rs73102036-G	0.01394	2E-8	(SPTAN1)	0.4038	NR unit increase	Illumina [1671387] (imputed)	N
2427	chr2	241443653	241443654	rs10933610	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	2q37.3	ANKMY1	rs10933610-C	0.1647	9E-6	(EA)			Illumina [4404269] (imputed)	N
2427	chr2	241446339	241446340	rs4074478	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.3	GPC1	rs4074478-T	0.106	4E-25	(Glypican-1, GPC1.8697.38.3)	0.42	[0.34-0.5] unit increase	Affymetrix [10572788] (imputed)	N
2427	chr2	241495012	241495013	rs4305276	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	2q37.3	ANKMY1	rs4305276-G	NR	2E-11		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2427	chr2	241501850	241501851	rs1138848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	2q37.3		rs1138848-C	NR	4E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PA2G4	5,361 Icelandic ancestry individuals	NA	2q37.3		rs78909033-A	0.1543	4E-28		0.280094	[0.23-0.33] unit increase	Illumina [7506463] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	2q37.3		rs78909033-A	0.1543	2E-17		0.22418	[0.17-0.28] unit decrease	Illumina [7506463] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NOG	5,366 Icelandic ancestry individuals	NA	2q37.3		rs78909033-A	0.1543	2E-12		0.186709	[0.14-0.24] unit decrease	Illumina [7506463] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.0589058	1E-11		0.021	[0.015-0.027] unit decrease	Affymetrix [23037915] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	2q37.3		rs78909033-A	NR	3E-13		0.0217	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q37.3		rs78909033-A	NR	7E-80		0.0638	[0.057-0.07] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	2q37.3		rs78909033-A	NR	2E-8		0.0195	[0.013-0.026] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q37.3		rs78909033-A	NR	7E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	2q37.3		rs78909033-G	0.866	4E-30				Affymetrix [10369434] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	2q37.3		rs78909033-G	0.866	1E-52				Affymetrix [10369434] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.13427	8E-14		0.02446082	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.13418	6E-14		0.024184415	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.135621	1E-15		0.026273213	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.135607	8E-38		0.042039726	[0.036-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.135613	9E-74		0.059637796	[0.053-0.066] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134258	5E-37		0.041494373	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134342	3E-20		0.030309316	[0.024-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.135614	2E-614		0.17359628	[0.17-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.1342	1E-18		0.0282377	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134175	5E-16		0.026161905	[0.02-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134291	2E-12		0.023152113	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134255	5E-18		0.0281638	[0.022-0.035] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134252	6E-14		0.024435842	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.134188	2E-9		0.019277519	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.126061	8E-17				Affymetrix, Illumina [24332387] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.130276	5E-20		0.025613	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.126646	1E-114				Affymetrix, Illumina [24588908] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.131066	8E-114		0.062783	[0.057-0.068] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs78909033-G	0.869399	9E-851				Affymetrix, Illumina [17210439] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q37.3	NR	rs78909033-G	0.8651	1E-846		0.175182	[0.17-0.18] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.13348	4E-17		0.024879	[0.019-0.031] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	2q37.3	NR	rs78909033-A	0.133563	1E-22		0.027798	[0.022-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q37.3		rs78909033-?	NR	1E-20				NR [~ 8900000] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	2q37.3		rs78909033-?	NR	1E-16				NR [~ 8900000] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.1364	3E-44		0.0730543	[0.063-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.1361	1E-34		0.06530957	[0.055-0.076] unit increase	Affymetrix [~ 2500000] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.1364	5E-230		0.1707332	[0.16-0.18] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2427	chr2	241510902	241510903	rs78909033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	2q37.3	RNPEPL1	rs78909033-A	0.135	3E-9		0.03080091	[0.021-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
2427	chr2	241515595	241515596	rs2953145	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	2q37.3	NR	rs2953145-C	0.23	7E-6		1.84	[1.31-2.58]	Affymetrix [469557]	N
2427	chr2	241541891	241541892	rs10933619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	2q37.3		rs10933619-G	0.582737	3E-8		0.0248133	[0.016-0.034] unit increase	Illumina [13471440] (imputed)	N
2427	chr2	241542182	241542183	rs113909935	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	2q37.3	DUSP28	rs113909935-C	0.91234375	8E-6	(DUSP28, 9940_35_3)	0.19469969	[0.11-0.28] unit increase	Illumina [> 1000000] (imputed)	N
2427	chr2	241553491	241553492	rs4676412	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	2q37.3	NR	rs4676412-G	0.214	3E-8		0.92515	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs4676410-A	0.220819	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q37.3	NR	rs4676410-A	0.209244	2E-10		0.015626	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.3		rs4676410-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	2q37.3	GPR35	rs4676410-A	0.19	2E-7				Illumina [7347414] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.3	NR	rs4676410-?	NR	4E-18	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
2427	chr2	241563738	241563739	rs4676410	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q37.3	GPR35	rs4676410-T	0.209	2E-7	(EA)	1.13		Illumina [128935]	N
2427	chr2	241563738	241563739	rs4676410	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	2q37.3	GPR35	rs4676410-T	0.209	1E-8		1.13		Illumina [128935]	N
2427	chr2	241563738	241563739	rs4676410	22821403	Ellinghaus D	2012-07-23	Hepatology	Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.	Sclerosing cholangitis and ulcerative colitis (combined)	Up to 389 European ancestry primary sclerosing cholangitis cases, 987 European ancestry ulcerative colitis cases, 2,968 European ancestry controls	1,012 European ancestry primary sclerosing cholangitis cases, 4,444 European ancestry ulcerative colitis cases, 11,659 European ancestry controls	2q37.3	GPR35	rs4676410-A	0.20	2E-9	(PSC)	1.38	[1.24-1.53]	Affymetrix [up to 1279891] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	2q37.3		rs34236350-T	NR	2E-10		0.1485	[0.1-0.19] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	2q37.3		rs34236350-T	NR	1E-32		0.0304	[0.026-0.035] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	2q37.3	GPR35	rs34236350-T	0.182706	7E-33		0.034117933	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	2q37.3	GPR35	rs34236350-T	0.182734	1E-34		0.03505211	[0.029-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs34236350-T	0.199279	5E-42				Affymetrix, Illumina [23467995] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	2q37.3	NR	rs34236350-T	0.182541	8E-38		0.032235	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2428	chr2	241568325	241568326	rs34236350	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	2q37.3	GPR35	rs34236350-T	0.1825	6E-13		0.03330093	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2428	chr2	241569691	241569692	rs3749171	29562276	Venkateswaran S	2018-03-01	Inflamm Bowel Dis	Enhanced Contribution of HLA in Pediatric Onset Ulcerative Colitis.	Childhood onset ulcerative colitis	466 European ancestry cases, 2,099 European ancestry controls	NA	2q37.3	NR	rs3749171-T	0.826119	9E-7		1.42		Affymetrix [3996700] (imputed)	N
2428	chr2	241569691	241569692	rs3749171	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q37.3	GPR35	rs3749171-?	NR	2E-25	(subset analysis)			Illumina [130052]	N
2428	chr2	241569691	241569692	rs3749171	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.3	NR	rs3749171-A	0.1806	4E-18	(EA)	1.1533448	[1.12-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2428	chr2	241569691	241569692	rs3749171	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.3	NR	rs3749171-A	0.1806	6E-6	(EA)	1.075187	[1.04-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2428	chr2	241569691	241569692	rs3749171	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	2q37.3	GPR35	rs3749171-T	0.167	3E-21		1.135	[1.093-1.177]	Affymetrix, Illumina [1230000] (imputed)	N
2428	chr2	241570248	241570249	rs3749172	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	2q37.3	GPR35	rs3749172-A	0.28	6E-11		1.45	[1.29-1.61]	Illumina [549616] (imputed)	N
2428	chr2	241574400	241574401	rs4676408	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	2q37.3	GPR35	rs4676408-?		1E-17				Illumina [9578670] (imputed)	N
2428	chr2	241574400	241574401	rs4676408	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q37.3	GPR35	rs4676408-?		8E-15				Illumina [9725440] (imputed)	N
2428	chr2	241575360	241575361	rs12474275	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	2q37.3	NR	rs12474275-?	NR	4E-6		0.226984	[0.13-0.32] unit increase	NR [13958389] (imputed)	N
2428	chr2	241579107	241579108	rs4676406	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q37.3	GPR35	rs4676406-?	NR	6E-10	(subset analysis)			Illumina [130052]	N
2428	chr2	241579107	241579108	rs4676406	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	2q37.3	GPR35	rs4676406-T	0.52	8E-11		1.14	[1.09-1.18]	Affymetrix, Illumina [~ 1100000] (imputed)	N
2428	chr2	241643272	241643273	rs4676380	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	2q37.3	NR	rs4676380-?	NR	2E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
2428	chr2	241693311	241693312	rs546034328	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	2q37.3	NR	rs546034328-T	0.017	4E-6		1.33	[0.76-1.9] unit increase	Illumina [9469131] (imputed)	N
2429	chr2	241717717	241717718	rs13027102	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	2q37.3	Intergenic	rs13027102-A	0.7834	4E-8		0.013	[0.0083-0.0177] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2429	chr2	241718735	241718736	rs142905232	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	2q37.3		rs142905232-G	NR	1E-6		1.9668	[1.2-2.74] unit increase	Illumina [NR] (imputed)	N
2429	chr2	241725636	241725637	rs74002922	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	2q37.3	KIF1A	rs74002922-A	0.3	6E-6		4.7	NR unit decrease	Illumina [NR] (imputed)	N
2429	chr2	241731539	241731540	rs6732174	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.3	NR	rs6732174-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
2429	chr2	241733661	241733662	rs4676366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.3	KIF1A	rs4676366-A	NR	3E-8		0.0177158	[0.011-0.024] unit decrease	Affymetrix [323123] (imputed)	N
2429	chr2	241734753	241734754	rs734586	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs734586-?	NR	6E-26				NR [~ 8900000] (imputed)	N
2429	chr2	241774014	241774015	rs61277584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	KIF1A	rs61277584-A	NR	7E-9		0.0162861	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
2429	chr2	241774014	241774015	rs61277584	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.3	intergenic	rs61277584-A	0.4733	3E-13		0.0137	[0.01-0.0174] unit increase	Affymetrix [18391927] (imputed)	N
2429	chr2	241782833	241782834	rs111500072	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	2q37.3	intergenic	rs111500072-A	NR	9E-6	(EA)			Illumina [up to 11995908] (imputed)	N
2429	chr2	241783038	241783039	rs117639576	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.3	KIF1A, AGXT	rs117639576-?	NR	5E-10		0.043194756	[0.03-0.057] unit increase	Illumina [27896057] (imputed)	N
2429	chr2	241783066	241783067	rs11691924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	KIF1A	rs11691924-C	NR	2E-8		0.0165768	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
2429	chr2	241818526	241818527	rs4344931	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	2q37.3	AGXT	rs4344931-A	0.29	8E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2429	chr2	241819795	241819796	rs4675874	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	2q37.3	AGXT	rs4675874-A	0.71	3E-20	(X-12556)	0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2430	chr2	241831154	241831155	rs78562453	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	2q37.3	C2orf54	rs78562453-?	NR	6E-8				Illumina [83898]	N
2430	chr2	241837451	241837452	rs6748734	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	2q37.3	AGXT	rs6748734-A	0.29	7E-18	(1.086 ppm)	0.0861	[NR] unit increase	Affymetrix [620456]	N
2430	chr2	241840540	241840541	rs6752657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.3		rs6752657-?	NR	2E-15				NR [~ 8900000] (imputed)	N
2430	chr2	241840710	241840711	rs6739772	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.3	C2orf54	rs6739772-A	0.2901	2E-9	(EA, women)	0.0299	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2430	chr2	241840710	241840711	rs6739772	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	2q37.3	C2orf54	rs6739772-A	0.2901	1E-8	(EA)	0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2430	chr2	241843751	241843752	rs10185785	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	C2orf54	rs10185785-A	NR	1E-9		0.019659	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
2430	chr2	241844032	241844033	rs6437219	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	MAB21L4	rs6437219-T	0.5217	1E-13		0.0185	[0.014-0.023] unit increase	Affymetrix [19819130] (imputed)	N
2430	chr2	241844032	241844033	rs6437219	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	MAB21L4	rs6437219-T	0.5217	1E-6		0.0121	[0.0072-0.017] unit increase	Affymetrix [19819130] (imputed)	N
2430	chr2	241846572	241846573	rs4417704	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	2q37.3	C2orf54, SNED1	rs4417704-?	NR	6E-12		0.087	[0.062-0.111] unit increase	Illumina [12039492] (imputed)	N
2430	chr2	241849320	241849321	rs4675855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs4675855-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2430	chr2	241853620	241853621	rs62186584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	2q37.3	NR	rs62186584-C	0.743514	6E-9		0.00796135	[0.0052-0.0107] unit increase	Affymetrix [16585854] (imputed)	N
2430	chr2	241853620	241853621	rs62186584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	2q37.3	NR	rs62186584-C	0.743514	2E-6		0.00733128	[0.0041-0.0105] unit increase	Affymetrix [16585866] (imputed)	N
2430	chr2	241925842	241925843	rs79264696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs79264696-?	NR	4E-14				NR [~ 8900000] (imputed)	N
2430	chr2	241937163	241937164	rs9288725	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.3	LOC200772, SNED1	rs9288725-?	NR	1E-11		0.022405513	[0.016-0.029] unit decrease	Illumina [27896057] (imputed)	N
2430	chr2	241943449	241943450	rs13403657	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	2q37.3	NR	rs13403657-?	0.03	1E-8	(EA)	3.26	[2.17-4.90]	Affymetrix, Illumina [~ 6000000] (imputed)	N
2431	chr2	241980092	241980093	rs78127965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs78127965-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2431	chr2	241982906	241982907	rs73110173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	SNED1, AC005237.4	rs73110173-G	NR	4E-8		0.0462257	[0.03-0.063] unit increase	Affymetrix [321016] (imputed)	N
2431	chr2	242009915	242009916	rs114262236	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	2q37.3	NR	rs114262236-G		5E-6		0.4187	[0.24-0.6] SD units increase	NR [10700000] (imputed)	N
2431	chr2	242012728	242012729	rs6721345	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	2q37.3	SNED1, MTERFD2	rs6721345-A	0.01	3E-6		1.13	[NR] unit increase	Illumina [~ 2500000] (imputed)	N
2431	chr2	242019287	242019288	rs6437234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	2q37.3	SNED1	rs6437234-T	0.15	2E-156	(Suppressor of cytokine signaling 3, SOCS3.11440.58.3)	0.83	[0.77-0.89] unit increase	Affymetrix [10572788] (imputed)	N
2431	chr2	242021215	242021216	rs2302045	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of antipsychotic drugs in severe mental disorder (concentration drug ratio)	Up to 829 European ancestry cases	NA	2q37.3	SNED1	rs2302045-T	0.067	4E-7		0.4064	[NR] unit decrease	Affymetrix [686595]	N
2431	chr2	242022370	242022371	rs1859927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	2q37.3	SNED1, MTERFD2	rs1859927-C	NR	8E-11		0.0273121	[0.019-0.036] unit increase	Affymetrix [323123] (imputed)	N
2431	chr2	242050739	242050740	rs2310876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q37.3	PASK	rs2310876-G	NR	1E-8		0.0177184	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
2431	chr2	242050739	242050740	rs2310876	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.3	PASK	rs2310876-A	0.6693	3E-12		0.014	[0.01-0.018] unit increase	Affymetrix [18391927] (imputed)	N
2431	chr2	242053545	242053546	rs17382723	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	2q37.3	PASK	rs17382723-C	0.96	3E-7		0.206	[0.13-0.28] unit increase	Affymetrix [1532051] (imputed)	N
2431	chr2	242054402	242054403	rs3815305	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	PASK	rs3815305-A	NR	9E-9		0.0287669	[0.019-0.039] unit increase	Affymetrix [321016] (imputed)	N
2431	chr2	242055381	242055382	rs531719802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	2q37.3	PASK	rs531719802-C	NR	1E-8		0.0239858	[0.016-0.032] unit increase	Affymetrix [321788] (imputed)	N
2431	chr2	242055381	242055382	rs531719802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	PASK	rs531719802-C	NR	6E-9		0.0234507	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
2431	chr2	242083762	242083763	rs59345329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	2q37.3		rs59345329-C	0.259005	8E-22		0.022537	[0.018-0.027] unit increase	Illumina [13479295] (imputed)	N
2431	chr2	242083762	242083763	rs59345329	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.3	PASK	rs59345329-?	NR	1E-23		0.033369493	[0.027-0.04] unit increase	Illumina [27896057] (imputed)	N
2432	chr2	242099960	242099961	rs2017989	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPP1R7	rs2017989-?	NR	2E-8		1.59514	[NR] unit increase	Affymetrix [NR] (imputed)	N
2432	chr2	242135264	242135265	rs77559646	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2q37.3	NR	rs77559646-A	0.0199543	4E-6		1.2941197	[1.16-1.44]	Affymetrix, Illumina [20400945] (imputed)	N
2432	chr2	242135264	242135265	rs77559646	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs77559646-A	NR	1E-27		1.328	[1.26-1.40]	Affymetrix, Illumina [29235255] (imputed)	N
2432	chr2	242137701	242137702	rs16843438	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	2q37.3		rs16843438-?	NR	1E-6		1.14004	[1.09-1.19]	NR [680312]	N
2432	chr2	242139599	242139600	rs77482050	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs77482050-G	NR	7E-18		1.432	[1.32-1.55]	Affymetrix, Illumina [29235255] (imputed)	N
2432	chr2	242141718	242141719	rs2074840	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2q37.3	NR	rs2074840-C	0.303395862	4E-6		1.0890392	[1.05-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
2432	chr2	242141718	242141719	rs2074840	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs2074840-C	NR	1E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
2432	chr2	242149009	242149010	rs57677160	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	2q37.3	ANO7	rs57677160-?		7E-14		6.0	[3.7-9.7]	Illumina [NR] (imputed)	N
2432	chr2	242157240	242157241	rs76832527	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	2q37.3	NR	rs76832527-A	0.188307499	3E-7		1.1178178	[1.07-1.17]	Affymetrix, Illumina [20400945] (imputed)	N
2432	chr2	242157240	242157241	rs76832527	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	2q37.3	NR	rs76832527-A	NR	7E-28		1.108	[1.09-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
2432	chr2	242163537	242163538	rs115620538	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	2q37.3	NR	rs115620538-?	NR	7E-6		0.0075536	[0.0043-0.0109] unit increase	Affymetrix [805426] (imputed)	N
2432	chr2	242166211	242166212	rs62186360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	2q37.3		rs62186360-T	NR	1E-10		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2432	chr2	242168975	242168976	rs15129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	2q37.3	HDLBP	rs15129-C	0.189948	9E-16		0.023026159	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
2432	chr2	242175330	242175331	rs6437249	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	2q37.3	NR	rs6437249-C	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2432	chr2	242176394	242176395	rs113492892	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	2q37.3	HDLBP	rs113492892-G	0.7232	7E-9		0.0906	[0.059-0.122] unit increase	Affymetrix [~ 11900000] (imputed)	N
2432	chr2	242177143	242177143	rs74543909	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	2q37.3		rs74543909-C	NR	3E-8		1.0872	NR	Affymetrix [7846216] (imputed)	N
2432	chr2	242179133	242179134	rs10153800	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	2q37.3	NR	rs10153800-A	0.23030799999999996	3E-8		0.00702017	[0.0044-0.0097] unit increase	Affymetrix [16582621] (imputed)	N
2432	chr2	242179133	242179134	rs10153800	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	2q37.3	NR	rs10153800-A	0.23030799999999996	6E-7		0.00673573	[0.0039-0.0096] unit increase	Affymetrix [16582614] (imputed)	N
2432	chr2	242185653	242185654	rs75590598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.3		rs75590598-?	NR	1E-35				NR [~ 8900000] (imputed)	N
2432	chr2	242192847	242192848	rs7578199	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	2q37.3	NR	rs7578199-T	0.745	8E-8		1.1764705	[1.11-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
2432	chr2	242194582	242194583	rs2305075	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	2q37.3	HDLBP	rs2305075-C	0.094	3E-10		6.29	z-score increase	Affymetrix [4311822] (imputed)	N
2433	chr2	242234836	242234837	rs10933548	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	2q37.3	NR	rs10933548-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
2433	chr2	242234836	242234837	rs10933548	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs10933548-?	NR	3E-26				NR [~ 8900000] (imputed)	N
2433	chr2	242236971	242236972	rs6743226	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	2q37.3	HDLBP	rs6743226-C	0.543	9E-11		0.019	[0.013-0.025] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2433	chr2	242236971	242236972	rs6743226	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q37.3	HDLBP	rs6743226-C	NR	3E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2433	chr2	242236971	242236972	rs6743226	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	2q37.3	HDLBP	rs6743226-C	0.543	7E-12		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	2E-10		0.0244836	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	9E-11		0.0244843	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641161	1E-9		0.0239751	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	7E-11		0.0252282	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	3E-10		0.0238958	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641161	2E-10		0.0243185	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	3E-10		0.0238659	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	1E-9		0.0235784	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	5E-11		0.0247519	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	5E-10		0.0239692	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	7E-11		0.0248283	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	1E-9		0.0236241	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	8E-11		0.0246588	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	2q37.3		rs59104589-C	0.641164	3E-12		0.0266915	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	2q37.3		rs59104589-T	NR	2E-8		0.0115	[0.0074-0.0156] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	2q37.3		rs59104589-T	NR	9E-20		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	2q37.3	NR	rs59104589-T	NR	1E-13		0.0183	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	2q37.3	HDLBP	rs59104589-C	0.641714	4E-14		0.0150125	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	2q37.3	HDLBP	rs59104589-C	0.641439	3E-11		0.0143727	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	2q37.3	HDLBP	rs59104589-C	0.641801	8E-17		0.0170267	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		2q37.3	HDLBP	rs59104589-?	NR	2E-14		0.0081	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
2433	chr2	242237901	242237902	rs59104589	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	2q37.3	HDLBP	rs59104589-T	0.34	8E-19		0.0083	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
2433	chr2	242241705	242241706	rs73018185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	2q37.3	HDLBP	rs73018185-T	0.187334	2E-20		0.02642137	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2433	chr2	242255377	242255378	rs1134941	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	2q37.3	NR	rs1134941-?		3E-6		2.07	[1.52-2.81]	Illumina [539473] (imputed)	N
2433	chr2	242255377	242255378	rs1134941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	2q37.3		rs1134941-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2433	chr2	242255377	242255378	rs1134941	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	2q37.3	NR	rs1134941-A	0.409475	6E-17		0.0260636	[0.02-0.032] unit increase	NR [19129689] (imputed)	N
2433	chr2	242262985	242262986	rs12694997	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	2q37.3	SEPT2	rs12694997-A	0.24	1E-8		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
2433	chr2	242265272	242265273	rs4234100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs4234100-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2433	chr2	242268435	242268436	rs62193162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	2q37.3		rs62193162-A	NR	2E-12		0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2433	chr2	242268435	242268436	rs62193162	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	2q37.3	SEPTIN2	rs62193162-T	0.640024	9E-16		0.00193963	[0.0015-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
2433	chr2	242268435	242268436	rs62193162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	2q37.3	NR	rs62193162-T	0.639451	3E-9		0.00498896	[0.0033-0.0067] unit increase	Affymetrix [16582909] (imputed)	N
2433	chr2	242268435	242268436	rs62193162	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	2q37.3	NR	rs62193162-T	0.639451	1E-7		0.00489105	[0.003-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
2433	chr2	242278006	242278007	rs13018977	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	2q37.3	SEPT2	rs13018977-A	0.224602	2E-8		0.100334994	[0.065-0.135] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
2433	chr2	242278017	242278018	rs141283512	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	2q37.3		rs141283512-A	0.85315	3E-10		0.0370711	[0.026-0.049] unit increase	NR [11722792] (imputed)	N
2433	chr2	242286373	242286374	rs116154780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	2q37.3		rs116154780-T	NR	1E-8		0.3165	[0.21-0.43] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
2433	chr2	242292697	242292698	rs182193570	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	2q37.3	SEPT2	rs182193570-A	0.017	6E-9	(IL-8)	26.143	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q37.3		rs3755397-A	0.903	8E-17				Affymetrix [10369434] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.3	AC005104.3, FARP2	rs3755397-G	0.097336	9E-16		0.032031722	[0.024-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.3	AC005104.3, FARP2	rs3755397-G	0.097344	3E-33		0.044874746	[0.038-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	2q37.3	FARP2	rs3755397-G	NR	9E-12		1.32	[1.22-1.43]	Affymetrix, Illumina [> 10000000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q37.3	FARP2, AC005104.3	rs3755397-G	0.0977	2E-15		0.04799229	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q37.3	FARP2, AC005104.3	rs3755397-G	0.0976	7E-14		0.04533178	[0.033-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q37.3	FARP2, AC005104.3	rs3755397-G	0.0976	6E-14		0.04530722	[0.033-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q37.3	FARP2, AC005104.3	rs3755397-G	0.0976	3E-13		0.0441912	[0.032-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2433	chr2	242294912	242294913	rs3755397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q37.3	FARP2, AC005104.3	rs3755397-G	0.0977	2E-15		0.04777988	[0.036-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2433	chr2	242296448	242296449	rs1476698	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	2q37.3	FARP2	rs1476698-A	0.631534	1E-8		0.00822246	[0.0054-0.0111] unit increase	Affymetrix [12370749]	N
2433	chr2	242296448	242296449	rs1476698	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	2q37.3	NR	rs1476698-A	0.630538	1E-20		0.0195591	[0.015-0.024] unit decrease	NR [NR]	N
2433	chr2	242296448	242296449	rs1476698	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		2q37.3	FARP2	rs1476698-?	NR	4E-12		0.0075	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
2433	chr2	242296448	242296449	rs1476698	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	2q37.3	FARP2	rs1476698-A	0.65	2E-9	(EA)	0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
2433	chr2	242297117	242297118	rs60624480	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	2q37.3	NR	rs60624480-A	0.3596	2E-21		0.002183	[0.0017-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
2433	chr2	242339644	242339644	rs10687319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.3	FARP2	rs10687319-AAG	0.478493	7E-12		0.016182505	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2433	chr2	242339644	242339644	rs10687319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	2q37.3	NR	rs10687319-AAG	0.47986700000000004	2E-8		0.0147773	[0.0093-0.0203] unit increase	Affymetrix [16580851] (imputed)	N
2433	chr2	242344694	242344695	rs139354822	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	2q37.3	FARP2	rs139354822-T	0.9691	1E-12		0.5473	[0.4-0.7] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2433	chr2	242350465	242350466	rs2240479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q37.3	NR	rs2240479-G	NR	9E-10		0.0251	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
2434	chr2	242352721	242352722	rs143775411	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	2q37.3		rs143775411-?	NR	4E-6		77.9797	[76.13-79.82]	NR [674885]	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	2E-12		0.0229	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	1E-9		0.0199	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	3E-11		0.0226	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	3E-12		0.0228	[0.016-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	2E-9		0.0195	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2434	chr2	242354631	242354632	rs62193221	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	2q37.3	NR	rs62193221-C	NR	6E-10		0.0212	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2434	chr2	242370750	242370751	rs59916403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	2q37.3		rs59916403-T	NR	1E-13		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
2434	chr2	242370750	242370751	rs59916403	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	2q37.3	NR	rs59916403-T	NR	2E-11		0.0174	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
2434	chr2	242370750	242370751	rs59916403	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	2q37.3	NR	rs59916403-G	0.64831	4E-9		0.0116418	[0.0078-0.0155] unit increase	Affymetrix [15000001]	N
2434	chr2	242371100	242371101	rs757978	23770605	Berndt SI	2013-06-16	Nat Genet	Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	2,179 European ancestry cases, 6,221 European ancestry controls	1,709 European ancestry cases, 6,318 European ancestry controls	2q37.3	FARP2	rs757978-A	0.11	1E-7		1.29	[NR]	Illumina [549934]	N
2434	chr2	242371100	242371101	rs757978	22700719	Slager SL	2012-06-13	Blood	Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,121 European ancestry cases, 3,745 European ancestry controls	861 European ancestry cases, 2,033 European ancestry controls	2q37.3	NR	rs757978-T	0.26	3E-6		1.46	[1.25-1.72]	Affymetrix, Illumina [~ 1500000] (imputed)	N
2434	chr2	242382863	242382864	rs3771570	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	2q37.3	NR	rs3771570-T	0.15	1E-14		1.09	[1.06-1.11]	Illumina [20370935] (imputed)	N
2434	chr2	242382863	242382864	rs3771570	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	2q37.3	BOK-AS1, DTYMK, FARP2, HDLBP, SEP2, STK25, THAP4, ANO7, ATG4B, BOK	rs3771570-A	0.15	5E-9		1.12	[1.08-1.17]	Illumina [~ 2600000] (imputed)	N
2434	chr2	242392861	242392862	rs187443429	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	2q37.3	FARP2	rs187443429-T	0.024	1E-8	(IL-8)	23.725	NR unit increase	Affymetrix, Illumina [> 5600000] (imputed)	N
2434	chr2	242393797	242393798	rs2302011	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs2302011-G	0.320253	5E-11				Affymetrix, Illumina [24332387] (imputed)	N
2434	chr2	242394140	242394141	rs764081	31707593	Kulminski AM	2019-11-09	Geroscience	Polygenic risk score for disability and insights into disability-related molecular mechanisms.	Disability (impaired activities of daily living)	7,544 European ancestry cases, 4,619 European ancestry controls	5,006 European ancestry cases, 6,899 European ancestry controls	2q37.3	FARP2	rs764081-G	0.295	8E-6		0.106	[0.059-0.153] unit increase	Illumina [NR]	N
2434	chr2	242394141	242394142	rs2302010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	2q37.3		rs2302010-A	NR	6E-9		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2434	chr2	242395673	242395674	rs4675812	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	2q37.3	FARP2	rs4675812-G	0.412115	1E-12		0.0143767	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
2434	chr2	242395673	242395674	rs4675812	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	2q37.3	FARP2	rs4675812-?	NR	7E-9		0.0153	[0.011-0.02] unit increase	Affymetrix [5701386] (imputed)	N
2434	chr2	242396693	242396694	rs886812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	2q37.3		rs886812-C	NR	1E-12		0.0137	[0.01-0.0174] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2434	chr2	242400596	242400597	rs13388333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	2q37.3		rs13388333-A	0.6337	6E-9		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2434	chr2	242400596	242400597	rs13388333	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	2q37.3	Intergenic	rs13388333-A	0.6337	6E-10	(MTAG)	0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2434	chr2	242403939	242403940	rs10182990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	2q37.3		rs10182990-G	NR	4E-11		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2434	chr2	242403939	242403940	rs10182990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	2q37.3		rs10182990-G	NR	3E-15		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
2434	chr2	242407587	242407588	rs41342147	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	2q37.3	FARP2, STK25	rs41342147-G	0.8734	4E-9		1.2545477	[1.16-1.35]	Illumina [8966411] (imputed)	N
2434	chr2	242407745	242407746	rs10933559	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q37.3	FARP2	rs10933559-G	0.208	3E-11		1.109		Illumina [715631] (imputed)	N
2434	chr2	242407745	242407746	rs10933559	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	2q37.3	FARP2	rs10933559-G	0.208	3E-11		1.109		Illumina [715631] (imputed)	N
2434	chr2	242419957	242419958	rs373082152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	2q37.3		rs373082152-G	NR	3E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2434	chr2	242419957	242419958	rs373082152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	2q37.3		rs373082152-G	NR	8E-9		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
2434	chr2	242421865	242421866	rs871375	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	2q37.3	NR	rs871375-A	0.66	3E-18		0.0167	[0.013-0.021] unit decrease	NR [NR]	N
2434	chr2	242421865	242421866	rs871375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	2q37.3		rs871375-?	NR	7E-10				NR [~ 8900000] (imputed)	N
2434	chr2	242422404	242422405	rs2012385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	2q37.3		rs2012385-A	NR	3E-17		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
2434	chr2	242444125	242444126	rs4633921	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	2q37.3		rs4633921-?	NR	9E-9				NR [~ 8900000] (imputed)	N
2434	chr2	242444172	242444173	rs7596240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	2q37.3		rs7596240-G	NR	6E-10		0.0626	[0.043-0.082] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2434	chr2	242444172	242444173	rs7596240	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	2q37.3	STK25	rs7596240-G	0.270163	6E-10		0.06345271	[0.043-0.084] unit increase	Affymetrix [7288503] (imputed)	N
2434	chr2	242444172	242444173	rs7596240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	2q37.3		rs7596240-?	NR	7E-9				NR [~ 8900000] (imputed)	N
2434	chr2	242445335	242445336	rs1995496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	2q37.3		rs1995496-G	NR	4E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
2434	chr2	242464586	242464587	rs59932381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	2q37.3		rs59932381-G	0.165901	3E-9		0.017689459	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2434	chr2	242466276	242466277	rs79349366	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	2q37.3		rs79349366-T	NR	5E-10		0.04	[0.027-0.053] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
2434	chr2	242466276	242466277	rs79349366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	2q37.3		rs79349366-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2434	chr2	242470475	242470476	rs7567892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls, 4,421 East Asian ancestry cases, 174,305 East Asian ancestry controls	NA	2q37.3		rs7567892-T	NR	2E-8		0.0614	[0.04-0.083] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2434	chr2	242470475	242470476	rs7567892	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (anilides)	83,218 European ancestry cases, 96,592 European ancestry controls	NA	2q37.3	BOK-AS1	rs7567892-T	0.0988176	2E-8		0.061420634	[0.04-0.083] unit increase	Affymetrix [7288503] (imputed)	N
2434	chr2	242471729	242471730	rs13428770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	2q37.3		rs13428770-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2435	chr2	242484700	242484701	rs76527535	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	2q37.3	intergenic	rs76527535-C	0.745	3E-8		1.09	1.06-1.12	Illumina [9725440] (imputed)	N
2435	chr2	242484700	242484701	rs76527535	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	2q37.3	Intergenic	rs76527535-?		5E-6				Illumina [9560910] (imputed)	N
2435	chr2	242488953	242488954	rs116596424	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	2q37.3		rs116596424-?	NR	8E-9		1.8097	[1.2-2.42] unit decrease	Affymetrix [NR] (imputed)	N
2435	chr2	242491352	242491353	rs7570235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	BOK-AS1	rs7570235-T	NR	2E-9		0.0172583	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
2435	chr2	242491871	242491872	rs870301	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	2q37.3		rs870301-A	0.40303	8E-9		0.0163235	[0.011-0.022] unit increase	Illumina [13479924] (imputed)	N
2435	chr2	242493510	242493511	rs4675801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	2q37.3		rs4675801-T	NR	1E-12		0.0117	[0.0086-0.0148] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2435	chr2	242493510	242493511	rs4675801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	2q37.3		rs4675801-T	NR	1E-37		0.0164	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2435	chr2	242495391	242495392	rs6718026	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	2q37.3	BOK	rs6718026-T	0.5857	2E-19		0.0171	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
2435	chr2	242495846	242495847	rs6718655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	2q37.3		rs6718655-?	NR	7E-22				NR [~ 8900000] (imputed)	N
2435	chr2	242495952	242495953	rs6733504	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	BOK-AS1	rs6733504-A	0.5464	7E-16		0.0191	[0.014-0.024] unit increase	Affymetrix [19819130] (imputed)	N
2435	chr2	242495952	242495953	rs6733504	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	2q37.3	BOK-AS1	rs6733504-A	0.5464	1E-12		0.0167	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
2435	chr2	242500558	242500558	rs5839768	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	2q37.3	BOK	rs5839768-?	NR	5E-13		0.020973634	[0.015-0.027] unit decrease	Illumina [27896057] (imputed)	N
2435	chr2	242500661	242500662	rs876531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	BOK	rs876531-T	NR	7E-9		0.0163194	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
2435	chr2	242500661	242500662	rs876531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	2q37.3		rs876531-?	NR	4E-43				NR [~ 8900000] (imputed)	N
2435	chr2	242502955	242502956	rs12479254	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	2q37.3	THAP4, BOK	rs12479254-?	0.40	6E-7				Illumina [448293]	N
2435	chr2	242506732	242506733	rs7420166	31887566	Carrion-Castillo A	2019-11-29	Cortex	Genetic effects on planum temporale asymmetry and their limited relevance to neurodevelopmental disorders, intelligence or educational attainment.	Planum temporale asymmetry index	18,049 British ancestry individuals	NA	2q37.3	BOK	rs7420166-A	0.259	8E-10		6.1577	NR unit increase	Affymetrix [15120452] (imputed)	N
2435	chr2	242512542	242512543	rs36156162	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BOK	rs36156162-?	NR	2E-12	(male)	3.90469	[NR] unit increase	Affymetrix [NR] (imputed)	N
2435	chr2	242516104	242516105	rs6717283	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	2q37.3	BOK, THAP4	rs6717283-G	0.142398411271235	1E-11		0.0456	[0.032-0.059] SD increase	Illumina [22400000] (imputed)	N
2435	chr2	242525813	242525814	rs184401988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	2q37.3	THAP4	rs184401988-G	NR	1E-8		0.0688741	[0.045-0.093] unit decrease	Affymetrix [321016] (imputed)	N
2435	chr2	242562009	242562010	rs34143604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	2q37.3	THAP4	rs34143604-A	0.380943	2E-12		0.016447414	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2435	chr2	242562009	242562010	rs34143604	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q37.3	NR	rs34143604-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2435	chr2	242564858	242564859	rs71430371	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		THAP4	rs71430371-?	NR	2E-12	(male)	3.92054	[NR] unit increase	Affymetrix [NR] (imputed)	N
2435	chr2	242594225	242594226	rs139302128	30510157	Franceschini N	2018-12-03	Nat Commun	GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes.	Carotid intima media thickness	Up to 71,128 European ancestry individuals	NA	2q37.3	ATG4B	rs139302128-T	0.03	8E-8		0.0487	[0.015-0.082] unit increase	Affymetrix, Illumina [9574088] (imputed)	N
2435	chr2	242610772	242610773	rs7601000	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	2q37.3	ATG4B	rs7601000-T	0.21450000000000002	3E-8		0.0124	[0.0081-0.0167] unit increase	Illumina [246328]	N
2435	chr2	242613132	242613133	rs7740	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	2q37.3		rs7740-G	0.454788	3E-8		0.0205138	[0.013-0.028] unit decrease	Illumina [13478928] (imputed)	N
2436	chr2	242630957	242630957	rs143872071	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	2q37.3		rs143872071-CTT	NR	2E-15		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2436	chr2	242634121	242634122	rs34426467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	2q37.3	AC133528.2	rs34426467-A	0.586014	6E-14		0.017071277	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2436	chr2	242634121	242634122	rs34426467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	2q37.3	NR	rs34426467-T	0.412294	4E-20		0.017979	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2436	chr2	242634121	242634122	rs34426467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	2q37.3	AC133528.2	rs34426467-A	0.5867	3E-19		0.0327131	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242636358	242636359	rs7586855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs7586855-T	0.411806	2E-19				Affymetrix, Illumina [17210439] (imputed)	N
2436	chr2	242637825	242637826	rs6751972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	2q37.3		rs6751972-A	NR	9E-11		0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2436	chr2	242637825	242637826	rs6751972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	2q37.3		rs6751972-A	NR	3E-11		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
2436	chr2	242637825	242637826	rs6751972	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	2q37.3	ING5	rs6751972-A		2E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2436	chr2	242638452	242638453	rs4675894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	2q37.3	NR	rs4675894-G	0.452273	5E-11		0.012377	[0.0087-0.0161] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2436	chr2	242638452	242638453	rs4675894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs4675894-G	0.445285	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
2436	chr2	242638452	242638453	rs4675894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	2q37.3	NR	rs4675894-G	0.452257	7E-13		0.013587	[0.0099-0.0173] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2436	chr2	242644727	242644728	rs35736498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	2q37.3	ING5	rs35736498-T	0.45804	8E-11		0.014402996	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2436	chr2	242644727	242644728	rs35736498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	2q37.3	ING5	rs35736498-T	0.458054	2E-12		0.015544181	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2436	chr2	242645465	242645466	rs62191340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	2q37.3	ING5	rs62191340-A	0.539601	5E-63		0.037671674	[0.033-0.042] unit increase	Affymetrix [93095623] (imputed)	N
2436	chr2	242645465	242645466	rs62191340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs62191340-A	0.542836	6E-20				Affymetrix, Illumina [24588908] (imputed)	N
2436	chr2	242645465	242645466	rs62191340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	2q37.3	NR	rs62191340-A	0.54945	2E-18		0.016656	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2436	chr2	242652847	242652848	rs77687125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	2q37.3		rs77687125-T	NR	8E-9		0.065	[0.043-0.087] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
2436	chr2	242665601	242665602	rs34119918	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	2q37.3	DTYMK	rs34119918-C	0.546549810270112	3E-7		0.0028375	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
2436	chr2	242674103	242674104	rs7370843	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.3	D2HGDH	rs7370843-A	0.234076	6E-15	(2-hydroxyglutarate)	0.218	[0.16-0.27] unit decrease	Illumina [13039987] (imputed)	N
2436	chr2	242674103	242674104	rs7370843	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q37.3	NR	rs7370843-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242682028	242682029	rs78147778	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	2q37.3	NR	rs78147778-T	0.748	2E-8		0.914	[0.6-1.23] unit decrease	Affymetrix [10894596] (imputed)	N
2436	chr2	242686105	242686106	rs111957722	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Artificially sweetened beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	2q37.3	D2HGDH	rs111957722-C	0.9316	2E-7		0.0135	[0.0084-0.0186] unit increase	Affymetrix [~ 7740000] (imputed)	N
2436	chr2	242690674	242690675	rs1106639	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation, 1p/19q non-codeleted)	316 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	245 European and unknown ancestry cases, 808 European and unknown ancestry controls	2q37.3	D2HGDH	rs1106639-?	NR	5E-8		5.453	NR z score decrease	Illumina [NR] (imputed)	N
2436	chr2	242690769	242690770	rs141343442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q37.3	NR	rs141343442-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242690769	242690770	rs141343442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q37.3	NR	rs141343442-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242692375	242692376	rs35359354	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	2q37.3	D2HGDH	rs35359354-C	0.900744	6E-11	(2-hydroxyglutarate)	0.252	[0.18-0.33] unit decrease	Illumina [13039987] (imputed)	N
2436	chr2	242692489	242692490	rs35061832	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	2q37.3	D2HGDH	rs35061832-?	NR	3E-13		1.1	[1.073-1.129]	Illumina [12845910] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	2q37.3		rs34290285-A	0.2299	6E-9		0.93		Affymetrix, Illumina [9397031] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	2q37.3		rs34290285-A	NR	7E-23		0.105	[0.084-0.126] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	2q37.3		rs34290285-A	NR	3E-26		0.1125	[0.092-0.133] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	2q37.3		rs34290285-A	NR	6E-11		0.0781	[0.055-0.101] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	2q37.3		rs34290285-A	NR	7E-33		0.1161	[0.097-0.135] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	2q37.3		rs34290285-A	NR	2E-60		0.0316	[0.028-0.035] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q37.3		rs34290285-A	NR	6E-37		0.108	[0.091-0.125] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	2q37.3		rs34290285-G	0.744	4E-37				Affymetrix [10369434] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	2q37.3		rs34290285-?	NR	2E-16		0.91	[0.89-0.93]	Illumina [5170515] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	2q37.3	D2HGDH	rs34290285-A	0.2554143825288	1E-39		0.0988716	[0.084-0.114] unit decrease	Affymetrix [35186738] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2564	4E-69		0.044514384	[0.04-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.256416	2E-70		0.044891234	[0.04-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	2q37.3	NR	rs34290285-A	0.246041	6E-94				Affymetrix, Illumina [19872809] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	2q37.3	NR	rs34290285-A	0.257132	5E-91		0.045886	[0.041-0.05] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-G	0.757	3E-13		0.036	[0.026-0.046] unit decrease	NR [NR] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-G	0.757	3E-13		0.036	[0.026-0.046] unit decrease	NR [7647814] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	2q37.3	D2HGDH	rs34290285-G	0.74	2E-55				NR [> 9500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	2q37.3	D2HGDH	rs34290285-G	0.740344	2E-70		1.128748	[1.11375354565426-1.14394442412391]	NR [9572556] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	2q37.3	D2HGDH, GAL3ST2, ING5, NEU4, DTYMK, ATG4B	rs34290285-G	0.74458	5E-36		1.0953622	[1.08-1.11]	Affymetrix [32463443] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	2q37.3	NR	rs34290285-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q37.3	NR	rs34290285-?	NR	2E-41				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q37.3	NR	rs34290285-?	NR	2E-34				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	2q37.3	NR	rs34290285-?	NR	8E-20				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	2q37.3	D2HGDH, GAL3ST2	rs34290285-G	0.744291	4E-42		1.1011212	[1.09-1.12]	Affymetrix [8274727] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	2q37.3	NR	rs34290285-G	0.7452	2E-51		1.1095084	[1.1-1.12]	Affymetrix [15688218] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	2q37.3	D2HGDH	rs34290285-?	0.6208	3E-9		1.1244799	[1.08-1.17]	Affymetrix [15688218] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	2q37.3	D2HGDH	rs34290285-A	0.2548	1E-44				Affymetrix [15688218] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-G	0.7465	3E-24		1.1422044	[1.11-1.17]	Affymetrix [15688218] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	2q37.3	NR	rs34290285-G	0.7452	6E-58		1.1064395	[1.09-1.12]	Affymetrix [15688218] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	2q37.3	D2HGDH, ING5, GAL3ST2	rs34290285-G	0.745	2E-20		1.177	[1.137-1.219]	Affymetrix [10894596] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	2q37.3	D2HGDH, ING5, GAL3ST2	rs34290285-G	0.745	2E-11		1.081	[1.056-1.106]	Affymetrix [10894596] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-A	0.255506	2E-23		0.12759554	[0.1-0.15] unit decrease	Affymetrix [7288503] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-A	0.25507	6E-9		0.083370775	[0.055-0.112] unit decrease	Affymetrix [7288503] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-A	0.253471	5E-28		0.113481805	[0.093-0.134] unit decrease	Affymetrix [7288503] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	2q37.3	D2HGDH	rs34290285-G	0.738	2E-8		1.071	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	2q37.3	D2HGDH	rs34290285-?	NR	4E-69		1.168	[1.15-1.19]	Affymetrix [9000000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	2q37.3	D2HGDH	rs34290285-?	NR	2E-28		1.097	[1.08-1.11]	Affymetrix [9000000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-G	NR	9E-52		1.124	[1.11-1.14]	Affymetrix [9000000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	2q37.3		rs34290285-?	NR	1E-39				NR [~ 8900000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	2q37.3		rs34290285-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	2q37.3		rs34290285-?	NR	3E-93				NR [~ 8900000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q37.3		rs34290285-?	NR	1E-58				NR [~ 8900000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	30552067	Shrine N	2018-12-11	Lancet Respir Med	Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.	Asthma (moderate or severe)	5,135 European ancestry cases, 25,675 European ancestry controls	5,414 European ancestry cases, 21,471 European ancestry controls	2q37.3	D2HGDH	rs34290285-G	0.7425999999999999	2E-23		1.1904762	[1.15-1.23]	Affymetrix [33771858] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2q37.3	D2HGDH, GAL3ST2	rs34290285-?	NR	5E-17		1.0752687		NR [74888535] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	2q37.3	D2HGDH, GAL3ST2	rs34290285-?	NR	2E-15		1.098901	[1.08-1.12]	Affymetrix [74888535] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-G	0.73	4E-33		1.082	[1.07-1.09]	Affymetrix, Illumina [8307659] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2572	5E-21		0.03838906	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2573	3E-18		0.03562407	[0.028-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2572	2E-25		0.04248529	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2573	3E-21		0.03871675	[0.031-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	2q37.3	D2HGDH	rs34290285-A	0.2571	5E-24		0.04123634	[0.033-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2436	chr2	242698639	242698640	rs34290285	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	2q37.3	D2HGDH	rs34290285-?	NR	2E-15		1.107	[1.079-1.135]	Illumina [13747813] (imputed)	N
2436	chr2	242701988	242701989	rs7569717	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	2q37.3		rs7569717-T	0.27	1E-41		0.2178	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2436	chr2	242702537	242702538	rs4449174	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	2q37.3		rs4449174-G	0.157143061	1E-8		0.8602773	[0.816650038-0.906235211]	Illumina [8919992] (imputed)	N
2436	chr2	242703617	242703618	rs5839764	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH mutation)	622 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	390 European and unknown ancestry cases, 808 European and unknown ancestry controls	2q37.3	D2HGDH	rs5839764-?	NR	3E-10		6.308	NR z score increase	Illumina [NR] (imputed)	N
2436	chr2	242703617	242703618	rs5839764	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	2q37.3	D2HGDH	rs5839764-G	0.386	2E-11		0.12	[0.16-0.09] unit decrease	Illumina [NR] (imputed)	N
2436	chr2	242708965	242708966	rs79626458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	2q37.3		rs79626458-T	0.161600059	4E-12		0.13993633	[0.1-0.18] unit decrease	Illumina [13429513] (imputed)	N
2436	chr2	242716379	242716380	rs12469459	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	kallikrein-11 levels	21,758 European ancestry individuals	9,173 individuals	2q37.3		rs12469459-A	0.69	1E-15		0.1146	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2436	chr2	242716379	242716380	rs12469459	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	2q37.3	NR	rs12469459-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242716379	242716380	rs12469459	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	2q37.3	GAL3ST2	rs12469459-A	0.68	3E-75		0.65	unit increase	Illumina [5270624] (imputed)	N
2436	chr2	242723432	242723433	rs73011950	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	2q37.3		rs73011950-A	0.94	1E-26		0.3606	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2436	chr2	242728097	242728098	rs62193063	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	2q37.3		rs62193063-T	0.17	1E-184		0.5343	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2436	chr2	242737340	242737341	rs35320439	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	2q37.3	GAL3ST2	rs35320439-?	NR	7E-10	(subset analysis)			Illumina [130052]	N
2436	chr2	242737340	242737341	rs35320439	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	2q37.3	PDCD1, ATG4B	rs35320439-G	0.3104	1E-9	(EA)	1.0876893	[1.06-1.11]	Affymetrix, Illumina [~ 9000000] (imputed)	N
2436	chr2	242740089	242740090	rs62193080	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	2q37.3	GAL3ST2	rs62193080-G	0.206	3E-57		0.32	[0.36-0.28] unit decrease	Illumina [NR] (imputed)	N
2436	chr2	242740270	242740271	rs115572130	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	2q37.3	NR	rs115572130-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
2436	chr2	242742811	242742812	rs141828605	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	2q37.3	GAL3ST2	rs141828605-T	0.009	1E-28		0.91	[0.75-1.07] unit increase	Illumina [NR] (imputed)	N
2436	chr2	242742841	242742842	rs139344622	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	2q37.3	GAL3ST2	rs139344622-G	0.009	8E-16		0.68	[0.51-0.84] unit increase	Illumina [NR] (imputed)	N
2436	chr2	242743531	242743532	rs150107870	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum cancer antigen 125 levels	9,824 Icelandic ancestry individuals	NA	2q37.3	GAL3ST2	rs150107870-C	0.019	2E-23		0.61	[0.49-0.73] unit increase	Illumina [NR] (imputed)	N
2437	chr2	242749987	242749988	rs62193087	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Ovarian cancer-related tumor marker CA 125 levels	21,758 European ancestry individuals	9,173 individuals	2q37.3		rs62193087-A	0.76	4E-34		0.1842	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2437	chr2	242755486	242755487	rs118164027	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	2q37.3		rs118164027-?	NR	1E-5		1.6495638	[0.92-2.38] unit increase	Illumina [9875426] (imputed)	N
2437	chr2	242779861	242779862	rs34071003	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	2q37.3	NR	rs34071003-?	NR	4E-6		1.328	[1.1789-1.4980]	Affymetrix [237955] (imputed)	N
2437	chr2	242790570	242790571	rs4973659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	2q37.3	AC114730.2, PDCD1	rs4973659-A	0.08823	1E-11		0.026583124	[0.019-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2437	chr2	242790570	242790571	rs4973659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	2q37.3	AC114730.2, PDCD1	rs4973659-A	0.088244	5E-10		0.024317347	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
2437	chr2	242842089	242842090	rs80145046	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	2q37.3	LOC101927289	rs80145046-?		2E-6				Illumina [4322238] (imputed)	N
2438	chr2	242877034	242877035	rs78458145	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	2q37.3	LINC01237	rs78458145-G	0.6	3E-15		4.166667	[2.86-5.88]	Affymetrix [508192]	N
2438	chr2	242879498	242879499	rs12998513	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	2q37.3	CXXC11, AK097934	rs12998513-A	0.8802	7E-12		6.855	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
2438	chr2	242879498	242879499	rs12998513	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	2q37.3	NR	rs12998513-A	0.955	2E-25		0.4513	[0.37-0.54] unit decrease	Illumina [~ 10600000] (imputed)	N
2438	chr2	242889532	242889533	rs71421178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	2q37.3		rs71421178-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2438	chr2	242954808	242954809	rs7563767	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer (MTAG)	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q37.3	Intergenic	rs7563767-?		2E-6		1.03	[1.02-1.05]	Illumina [7645193] (imputed)	N
2438	chr2	242954808	242954809	rs7563767	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	2q37.3	Intergenic	rs7563767-?		2E-6		1.34	[1.19-1.51]	Illumina [7645193] (imputed)	N
2438	chr2	242957106	242957107	rs77208998	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	2q37.3	LINC01237	rs77208998-?		6E-6				Illumina [7405822] (imputed)	N
2439	chr2	243026494	243026495	rs749924	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	2q37.3	C2orf85	rs749924-T	0.5	1E-7	(AA)	0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
2439	chr2	243048759	243048760	rs12478296	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	2q37.3	LOC728323	rs12478296-A	0.446	8E-6	(Vitamin B12 )	0.03	[NR] pmol/L increase	Illumina [899892]	N
586	chr20	134283	134284	rs6055069	32077919	Antikainen AAV	2020-02-20	Cardiovasc Res	Genome-wide association study on coronary artery disease in type 1 diabetes suggests beta-defensin 127 as a risk locus.	Coronary artery disease in type 1 diabetes	941 European ancestry cases, 3,928 European ancestry controls	434 cases, 3,123 controls	20p13	DEFB127	rs6055069-C	0.98	1E-6		0.38	[0.25-0.56]	Illumina [8744746] (imputed)	N
586	chr20	156141	156142	rs142002225	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	20p13	Intergenic	rs142002225-T		3E-7	(women)	0.108	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
586	chr20	168019	168020	rs13036722	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	DEFB128	rs13036722-G	0.067	7E-7	(Sleep duration )	0.04	[NR] min/d increase	Illumina [899892]	N
586	chr20	191796	191797	rs6074578	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	20p13	DEFB129	rs6074578-?	NR	4E-6	(Conditioned on rs2435357, rs1800860, rs7078220 and rs16879552)			Illumina [757260]	N
587	chr20	269157	269158	rs78532272	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	20p13	C20orf96, DEFB128, DEFB129, DEFB132, ZCCHC3, SOX12, NRSN2, TRIB3	rs78532272-C	0.04	3E-6		0.58	[0.34-0.82] unit decrease	Illumina [8066948] (imputed)	N
587	chr20	269157	269158	rs78532272	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall)	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	20p13	DEFB128, DEFB129, DEFB132, C20orf96, ZCCHC3, SOX12, NRSN2, TRIB3	rs78532272-C	0.04	6E-7		0.62	[0.38-0.86] unit decrease	Illumina [8066948] (imputed)	N
587	chr20	351943	351944	rs6051520	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p13	TRIB3	rs6051520-T	0.21	2E-7	(speed factor)	0.18	[0.12-0.24] unit increase	Illumina [~ 610000]	N
587	chr20	373666	373667	rs62191444	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	20p13	NR	rs62191444-G		4E-6		0.1136	[0.065-0.162] SD units increase	NR [10700000] (imputed)	N
587	chr20	374060	374061	rs9941733	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	20p13	NR	rs9941733-G		3E-7		0.1161	[0.071-0.161] SD units decrease	NR [10700000] (imputed)	N
587	chr20	374060	374061	rs9941733	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	20p13	NR	rs9941733-G		7E-7		0.114	[0.069-0.159] SD units decrease	NR [10700000] (imputed)	N
587	chr20	382875	382876	rs6037542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20p13		rs6037542-G	NR	7E-10		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
587	chr20	389279	389280	rs41306771	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RBCK1	rs41306771-?	NR	4E-8		1.1096	[NR] unit decrease	Affymetrix [NR] (imputed)	N
587	chr20	390309	390310	rs6139104	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20p13	NR	rs6139104-A	0.907226	2E-11		0.0221474	[0.016-0.029] unit increase	Affymetrix [15000001]	N
587	chr20	392282	392283	rs6139113	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6139113-T	0.155313	3E-11				Affymetrix, Illumina [19872809] (imputed)	N
588	chr20	400521	400522	rs112445559	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RBCK1	rs112445559-?	NR	3E-10	(male)	3.76146	[NR] unit decrease	Affymetrix [NR] (imputed)	N
588	chr20	486741	486742	rs2857002	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lawsonibacter sp000492175 abundance in stool	5,959 Finnish ancestry individuals	NA	20p13		rs2857002-C	0.0257503	4E-8		0.0964962	[0.062-0.131] unit decrease	Illumina [7980478] (imputed)	N
588	chr20	495518	495519	rs77801195	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CSNK2A1	rs77801195-?	NR	4E-13	(male)	2.08706	[NR] unit decrease	Affymetrix [NR] (imputed)	N
588	chr20	508430	508431	rs74448913	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p13	CSNK2A1, TBC1D20, TCF15, RBCK1	rs74448913-A	NR	8E-8	(sleep latency)	0.9822	[0.62-1.34] unit increase	Affymetrix [7141204] (imputed)	N
588	chr20	521769	521770	rs73892448	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CSNK2A1	rs73892448-?	NR	1E-12		1.30851	[NR] unit decrease	Affymetrix [NR] (imputed)	N
589	chr20	528547	528548	rs2092673	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 81)	19,670 European ancestry individuals	NA	20p13		rs2092673-?	NR	5E-8				NR [9705931] (imputed)	N
589	chr20	532256	532257	rs112815007	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p13	CSNK2A1, TCF15, TBC1D20, SRXN1	rs112815007-G	NR	4E-7	(sleep latency, weekdays)	1.041	[0.64-1.44] unit increase	Affymetrix [7141204] (imputed)	N
589	chr20	532804	532805	rs204664	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20p13	NR	rs204664-?	NR	9E-8	(Japanese)	0.5462	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
589	chr20	543637	543638	rs204693	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	20p13	CSNK2A1	rs204693-C	0.07673	8E-6				Illumina [4404269] (imputed)	N
589	chr20	547558	547559	rs147597631	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		20p13	Intergenic	rs147597631-T	0.061	2E-6	(liability model)	0.18	[0.1-0.26] unit increase	NR [19725427] (imputed)	N
589	chr20	549917	549918	rs6084946	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p13	NR	rs6084946-C	0.233844371161549	5E-6	(IGP45)	0.2176	[0.12-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
589	chr20	569163	569164	rs151235402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20p13		rs151235402-T	NR	2E-9		0.0556	[0.037-0.074] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
589	chr20	569163	569164	rs151235402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p13	TCF15	rs151235402-T	NR	4E-10		0.0738665	[0.051-0.097] unit decrease	Affymetrix [321788] (imputed)	N
589	chr20	569163	569164	rs151235402	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p13	TCF15	rs151235402-T	NR	9E-9		0.0656774	[0.043-0.088] unit decrease	Affymetrix [321016] (imputed)	N
589	chr20	569163	569164	rs151235402	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20p13	TCF15	rs151235402-C	0.984174	9E-11		0.0529665	[0.037-0.069] unit decrease	Affymetrix [NR] (imputed)	N
589	chr20	569163	569164	rs151235402	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20p13	NR	rs151235402-T	0.0152	3E-6		0.0384	[0.022-0.054] unit increase	NR [~ 27400000] (imputed)	N
589	chr20	571466	571467	rs144033177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p13		rs144033177-A	0.984469	2E-8		0.0913541	[0.059-0.123] unit increase	NR [11722792] (imputed)	N
589	chr20	571466	571467	rs144033177	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p13		rs144033177-A	0.984469	3E-8		0.0906815	[0.059-0.123] unit increase	NR [11722792] (imputed)	N
589	chr20	571466	571467	rs144033177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p13	TCF15	rs144033177-C	NR	1E-15		0.0913939	[0.069-0.114] unit increase	Affymetrix [319769] (imputed)	N
589	chr20	571466	571467	rs144033177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p13	TCF15	rs144033177-C	NR	2E-15		0.091018	[0.069-0.113] unit increase	Affymetrix [319769] (imputed)	N
589	chr20	571466	571467	rs144033177	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20p13	TCF15	rs144033177-A	0.984179	1E-12		0.0558275	[0.04-0.071] unit increase	Affymetrix [NR] (imputed)	N
589	chr20	571466	571467	rs144033177	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20p13	TCF15	rs144033177-A	0.984172	8E-10		0.0496563	[0.034-0.065] unit increase	Affymetrix [NR] (imputed)	N
589	chr20	571466	571467	rs144033177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p13	NR	rs144033177-A	0.984005	1E-8		0.0176771	[0.011-0.024] unit increase	Affymetrix [16582909] (imputed)	N
589	chr20	571466	571467	rs144033177	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p13	NR	rs144033177-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
589	chr20	571466	571467	rs144033177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20p13		rs144033177-?	NR	2E-9				NR [~ 8900000] (imputed)	N
589	chr20	571466	571467	rs144033177	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20p13	NR	rs144033177-A	0.9848	2E-10		0.0526	[0.036-0.069] unit decrease	NR [~ 27400000] (imputed)	N
589	chr20	594779	594780	rs1533087	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	20p13	NR	rs1533087-T		9E-6	(Modelling analysis)	1.06	[1.03-1.09]	NR [1252901] (imputed)	N
589	chr20	607804	607805	rs1964859	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20p13	TCF15	rs1964859-T	0.299848	4E-8		0.015905	[0.01-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
589	chr20	633681	633682	rs140994111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p13	SRXN1, RP5-850E9.3	rs140994111-C	NR	7E-10		0.0720213	[0.049-0.095] unit increase	Affymetrix [319769] (imputed)	N
589	chr20	633681	633682	rs140994111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p13	SRXN1, RP5-850E9.3	rs140994111-C	NR	8E-10		0.0718639	[0.049-0.095] unit increase	Affymetrix [319769] (imputed)	N
590	chr20	718541	718542	rs11697300	29324852	Primes G	2018-01-11	PLoS One	Real-life helping behaviours in North America: A genome-wide association approach.	Helping behaviour (self reported)	10,713 European ancestry, African American and unknown ancestry individuals	NA	20p13	SLC52A3, SCRT2	rs11697300-?	NR	7E-10		0.098	[0.067-0.129] unit increase	Illumina [1224134] (imputed)	N
590	chr20	737181	737182	rs6140100	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	20p13	intergenic	rs6140100-T	0.16	8E-6	(male)	0.107	[0.06-0.154] unit decrease	Illumina [6380737] (imputed)	N
590	chr20	750294	750295	rs6133379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p13		rs6133379-G	NR	8E-9		0.01	[0.0067-0.0133] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
590	chr20	753309	753310	rs6117562	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls		SLC52A3, FAM110A	rs6117562-A	0.512	3E-8		1.0928961	NR	Illumina [7742602] (imputed)	N
590	chr20	759314	759315	rs6117615	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	20p13	C20orf54	rs6117615-C	0.24	7E-6	(Dominant)	3.89	[2.1-7.18]	Illumina [555600]	N
590	chr20	775841	775842	rs535315	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	20p13	NR	rs535315-?	NR	9E-10		6.122	NR z score decrease	Illumina [at least 830937] (imputed)	N
591	chr20	791956	791957	rs650759	33491310	Warner ET	2021-02-01	Obesity (Silver Spring)	A Genome-Wide Association Study of Childhood Body Fatness.	Childhood body fatness	34,401 European ancestry individuals	NA	20p13	NR	rs650759-?	NR	6E-10		6.358	NR z score increase	Affymetrix, Illumina [10031233] (imputed)	N
591	chr20	802796	802800	rs563152278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20p13	NR	rs563152278-A	NR	3E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
591	chr20	802796	802800	rs563152278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20p13	NR	rs563152278-A	NR	3E-9		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
591	chr20	802814	802818	rs138017947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20p13		rs138017947-A	NR	7E-9		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
591	chr20	819661	819662	rs6108038	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	FAM110A	rs6108038-A	0.04	7E-6	(Waist:height)	0.03	[NR] unit increase	Illumina [899892]	N
591	chr20	867323	867324	rs6039055	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20p13	NR	rs6039055-A	NR	2E-6		1.037	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
591	chr20	876840	876841	rs77402555	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	20p13	ANGPT4	rs77402555-?		3E-6	(French Canadians)	3.8567452		Illumina [7614484] (imputed)	N
591	chr20	894880	894881	rs523865	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Peanut allergy	1,068 European ancestry cases, 3,327 European ancestry controls, 514 cases, 2,119 controls	NA	20p13	ANGPT4	rs523865-?		2E-7				Illumina [7830195] (imputed)	N
591	chr20	894880	894881	rs523865	29030101	Asai Y	2017-10-10	J Allergy Clin Immunol	Genome-wide association study and meta-analysis in multiple populations identifies new loci for peanut allergy and establishes C11orf30/EMSY as a genetic risk factor for food allergy.	Food allergy	1,170 European ancestry cases, 3,336 European ancestry controls, up to 6,098 cases, up to 25,748 controls	NA	20p13	ANGPT4	rs523865-?	NR	4E-8	(excluding GERA cohort)			Illumina [7830195] (imputed)	N
591	chr20	895324	895325	rs11697918	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	20p13	ANGPT4	rs11697918-G	0.3852	2E-6	(FVC)	0.2619	NR unit decrease	Affymetrix [305158]	N
591	chr20	895456	895457	rs1014897	26993346	Schott JM	2016-03-15	Alzheimers Dement	Genetic risk factors for the posterior cortical atrophy variant of Alzheimer's disease.	Posterior cortical atrophy and Alzheimer's disease	293 cases, 10,547 healthy controls	NA	20p13	Intergenic	rs1014897-?	NR	6E-6		1.4817307	[NR]	Illumina [~ 5900000] (imputed)	N
592	chr20	926396	926397	rs502716	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy)	19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	20p13	RSP04	rs502716-?		3E-8	(Hispanic)	28.0	[NR]	Illumina [936149]	N
592	chr20	926396	926397	rs502716	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	20p13	RSP04	rs502716-?		4E-6	(Hispanic)	14.0	[NR]	Illumina [936149]	N
592	chr20	939796	939797	rs62187521	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	20p13	RSPO4, ANGPT4, PSMF1	rs62187521-T	0.03	5E-7		1.33	[0.84-1.82] unit decrease	Illumina [8411492] (imputed)	N
592	chr20	939863	939864	rs79127824	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	20p13	RSPO4	rs79127824-T	0.9327	3E-6		0.1108	[0.064-0.157] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
592	chr20	1002041	1002042	rs2207321	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RSPO4	5,368 Icelandic ancestry individuals	NA	20p13		rs2207321-C	0.3828	1E-20		0.168777	[0.13-0.2] unit increase	Illumina [7506463] (imputed)	N
592	chr20	1028345	1028346	rs6056847	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RSPO4	5,368 Icelandic ancestry individuals	NA	20p13		rs6056847-A	0.4261	9E-15		0.139752	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
592	chr20	1028345	1028346	rs6056847	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	RSPO4	rs6056847-G	0.57515625	9E-14	(RSPO4, 8464_31_3)	0.17172986	[0.13-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
593	chr20	1058225	1058226	rs79999086	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		20p13	LCN1P2	rs79999086-T	0.98	1E-6		0.051	[0.029-0.073] dioptres decrease	NR [5900115] (imputed)	N
593	chr20	1104012	1104013	rs6133957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20p13		rs6133957-?	NR	4E-8				NR [~ 8900000] (imputed)	N
593	chr20	1116428	1116429	rs6077860	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	20p13	PSMF1	rs6077860-A	NR	5E-8		1.27	[NR] unit increase	Affymetrix [NR] (imputed)	N
593	chr20	1148575	1148576	rs77880822	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	20p13	PSMF1	rs77880822-?	0.901215	6E-6		1.764241	[1.38-2.26]	Affymetrix, Illumina [NR] (imputed)	N
593	chr20	1162695	1162696	rs6040355	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroxine levels	596 Croatian individuals, 510 Korculan (founder/genetic isolate) individuals, 609 Vis (founder/genetic isolate) individuals	NA	20p13	TMEM74B	rs6040355-A	0.03	8E-7		0.54	[0.32-0.76] pmol/L decrease	Illumina [7411206] (imputed)	N
594	chr20	1205885	1205886	rs397020	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	20p13	C20orf46	rs397020-?	0.52	8E-7		1.41	[NR]	Illumina [551642]	N
594	chr20	1221170	1221171	rs970084	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	20p13	SNPH	rs970084-?		5E-6				Affymetrix, Illumina [1348798]	N
594	chr20	1228182	1228183	rs62186523	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	20p13		rs62186523-?	NR	2E-8		2.0057	[1.31-2.7] unit increase	Affymetrix [NR] (imputed)	N
594	chr20	1277098	1277099	rs6078493	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	20p13	NR	rs6078493-?	NR	8E-6		0.006106	[0.0034-0.0088] unit increase	Affymetrix [9658292] (imputed)	N
594	chr20	1278779	1278780	rs73073684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	20p13	SNPH	rs73073684-C	0.9769	7E-6		0.1815	[0.1-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr20	1278779	1278780	rs73073684	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	20p13	SNPH	rs73073684-C	0.9782	7E-6		0.1152	[0.065-0.165] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
594	chr20	1309713	1309714	rs77523578	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	20p13	FKBP1A-SDCBP2;SDCBP2-AS1	rs77523578-T	0.0232	1E-5		0.3978	[0.22-0.57] unit decrease	NR [NR] (imputed)	N
594	chr20	1309713	1309714	rs77523578	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	20p13	FKBP1A-SDCBP2, SDCBP2-AS1	rs77523578-T	NR	1E-5		0.3978	[0.22-0.57] unit decrease	NR [NR] (imputed)	N
595	chr20	1333059	1333060	rs62187537	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	20p13	FKBP1A-SDCBP2	rs62187537-T	0.067	1E-8		0.605	[0.4-0.81] unit increase	Affymetrix [NR] (imputed)	N
595	chr20	1333059	1333060	rs62187537	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20p13	SDCBP2, FKBP1A	rs62187537-T	0.0684	9E-15		0.0039	[0.0025-0.0053] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
595	chr20	1340243	1340244	rs62187541	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20p13	FKBP1A-SDCBP2	rs62187541-A	0.9323	1E-12		0.0037	[0.0023-0.0051] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
595	chr20	1349051	1349052	rs6134733	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	SDCBP2	rs6134733-?	NR	8E-6	(glycocholate)	0.33951157	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
595	chr20	1401490	1401491	rs73584251	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	20p13	NR	rs73584251-?	NR	4E-7		0.4242	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
595	chr20	1410581	1410582	rs1884389	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p13	NR	rs1884389-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
595	chr20	1410581	1410582	rs1884389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p13		rs1884389-?	NR	4E-8				NR [~ 8900000] (imputed)	N
595	chr20	1410581	1410582	rs1884389	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p13	NA	rs1884389-T	0.4386	4E-10		0.0108	[0.0075-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
595	chr20	1410581	1410582	rs1884389	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	20p13	NA	rs1884389-T	0.4386	4E-10		0.0108	[0.0075-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
596	chr20	1459059	1459060	rs6042507	23620142	Reiner AP	2013-04-24	Hum Mol Genet	Genome-wide and gene-centric analyses of circulating myeloperoxidase levels in the charge and care consortia.	Circulating myeloperoxidase levels (serum)	9,305 European ancestry individuals		20p13	SIRPB2	rs6042507-A	0.11	4E-8		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [2397181]	N
596	chr20	1508098	1508099	rs2263655	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	20p13		rs2263655-?	NR	8E-10		0.0211	NR unit increase	NR [4428082] (imputed)	N
596	chr20	1512538	1512539	rs34500063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	RP4-576H24.2	rs34500063-C	0.832605	1E-15		0.029288784	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr20	1516179	1516180	rs73076965	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	RP4-576H24.2, SIRPD	rs73076965-G	0.1985	6E-33		0.05421814	[0.045-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr20	1516378	1516379	rs73076966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p13	RP4-576H24.2, SIRPD	rs73076966-T	0.1985	1E-15		0.03680846	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr20	1516905	1516906	rs7271240	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p13	RP4-576H24.2, SIRPD	rs7271240-A	0.2126	5E-12		0.03017378	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
596	chr20	1541751	1541752	rs6074813	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	20p13	SIRPD, SIRPB1	rs6074813-T	NR	3E-8		1.12	[1.08-1.16]	Illumina [NR] (imputed)	N
596	chr20	1543065	1543066	rs3848788	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIRPB1	rs3848788-A	0.305	1E-213	(Signal-regulatory protein beta-1, SIRPB1.6247.9.3)	0.75	[0.71-0.79] unit increase	Affymetrix [10572788] (imputed)	N
596	chr20	1545856	1545857	rs16995228	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRPB1	5,363 Icelandic ancestry individuals	NA	20p13		rs16995228-T	0.1914	2E-273		0.764221	[0.72-0.81] unit decrease	Illumina [7506463] (imputed)	N
596	chr20	1546741	1546742	rs2243602	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRPB1	5,363 Icelandic ancestry individuals	NA	20p13		rs2243602-T	0.4678	6E-145		0.452314	[0.42-0.49] unit decrease	Illumina [7506463] (imputed)	N
596	chr20	1546741	1546742	rs2243602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20p13		rs2243602-A	NR	1E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
596	chr20	1546741	1546742	rs2243602	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20p13		rs2243602-A	NR	3E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
596	chr20	1546741	1546742	rs2243602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs2243602-A	0.56304	6E-10		0.013796782	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr20	1546741	1546742	rs2243602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p13		rs2243602-?	NR	5E-9				NR [~ 8900000] (imputed)	N
596	chr20	1551484	1551485	rs2254458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20p13	SIRPB1	rs2254458-T	0.645493	1E-10		0.015007722	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
596	chr20	1551484	1551485	rs2254458	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20p13	NR	rs2254458-T	0.644615	2E-10		0.013414	[0.0093-0.0175] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
596	chr20	1557953	1557954	rs2244133	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRPB1	5,363 Icelandic ancestry individuals	NA	20p13		rs2244133-T	0.0892	2E-204		0.915931	[0.86-0.97] unit decrease	Illumina [7506463] (imputed)	N
596	chr20	1557953	1557954	rs2244133	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	NR	rs2244133-T	0.099	9E-136	(Signal-regulatory protein beta-1, SIRPB1.6247.9.3)	0.95	[0.87-1.03] unit decrease	Affymetrix [10572788] (imputed)	N
596	chr20	1559100	1559101	rs41275422	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	NR	rs41275422-G	0.132	8E-154	(Signal-regulatory protein beta-1, SIRPB1.6247.9.3)	0.98	[0.9-1.06] unit increase	Affymetrix [10572788] (imputed)	N
596	chr20	1561285	1561286	rs12480824	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	NR	rs12480824-T	0.204	2E-41	(Signal-regulatory protein beta-1, SIRPB1.6247.9.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
597	chr20	1596472	1596473	rs2318043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20p13		rs2318043-G	NR	6E-15		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
597	chr20	1597255	1597256	rs36101433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs36101433-T	0.218719	4E-17		0.02259059	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
597	chr20	1597432	1597433	rs34600126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs34600126-T	0.218178	3E-21				Affymetrix, Illumina [23467995] (imputed)	N
597	chr20	1597432	1597433	rs34600126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20p13	NR	rs34600126-T	0.217724	6E-23		0.022368	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
597	chr20	1600924	1600925	rs11696739	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	20p13	NR	rs11696739-A	0.3767	6E-11		0.0173694	[0.012-0.023] unit decrease	Affymetrix [3505788] (imputed)	N
597	chr20	1600924	1600925	rs11696739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs11696739-A	0.378694	5E-30		0.02648499	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1600924	1600925	rs11696739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs11696739-A	0.378727	9E-21		0.021352148	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1600924	1600925	rs11696739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs11696739-A	0.378733	3E-100		0.05864254	[0.053-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1600924	1600925	rs11696739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p13	RP4-576H24.4, SIRPB1	rs11696739-A	0.377795	9E-10		0.013959184	[0.0095-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1600924	1600925	rs11696739	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	SIRPB1, RP4-576H24.4	rs11696739-A	0.3787	3E-41		0.05015766	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr20	1602668	1602669	rs76357893	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	NR	rs76357893-G	0.124	3E-161	(Signal-regulatory protein beta-1, SIRPB1.6247.9.3)	0.92	[0.86-0.98] unit decrease	Affymetrix [10572788] (imputed)	N
597	chr20	1603142	1603143	rs4814391	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	SIRPB1	rs4814391-C	0.84140625	5E-226	(SIRPB1, 6247_9_3)	1.0308148	[0.97-1.09] unit increase	Illumina [> 1000000] (imputed)	N
597	chr20	1610550	1610551	rs2281808	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	SIRPG	rs2281808-C	0.678125	2E-19	(SIRPG, 9241_40_3)	0.24237275	[0.19-0.29] unit increase	Illumina [> 1000000] (imputed)	N
597	chr20	1610550	1610551	rs2281808	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	20p13	intergenic	rs2281808-?	0.64	1E-11		1.11	[1.05-1.19]	Affymetrix, Illumina [841622] (imputed)	N
597	chr20	1611917	1611918	rs56040592	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	20p13	SIRPG	rs56040592-?		2E-6	(French Canadians)	2.1576881		Illumina [7614484] (imputed)	N
597	chr20	1612818	1612819	rs1535883	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRPG	5,334 Icelandic ancestry individuals	NA	20p13		rs1535883-A	0.3214	6E-36		0.219259	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
597	chr20	1615307	1615308	rs17770331	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	20p13	SIRPG-AS1, SIRPG	rs17770331-A	NR	7E-7		0.1421	[0.086-0.198] unit increase	Illumina [~ 6700000] (imputed)	N
597	chr20	1616205	1616206	rs6043409	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIRPG	rs6043409-G	0.652	8E-24	(Signal-regulatory protein gamma, SIRPG.9241.40.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
597	chr20	1616205	1616206	rs6043409	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	20p13	Intergenic	rs6043409-G	0.65	3E-10		1.1363636		Illumina [135870]	N
597	chr20	1626478	1626479	rs4813191	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	20p13	SIRPG-AS1, SIRPG	rs4813191-C	NR	8E-6		0.1206	[0.068-0.173] unit increase	Illumina [~ 6700000] (imputed)	N
597	chr20	1651968	1651969	rs3818168	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	20p13	SIRPG	rs3818168-T	NR	6E-7		0.1452	[0.088-0.202] unit increase	Illumina [~ 6700000] (imputed)	N
597	chr20	1654073	1654074	rs140840556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	SIRPB3P	rs140840556-C	0.00459799999999999	6E-22		0.19004175	[0.15-0.23] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1654073	1654074	rs140840556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p13	SIRPB3P	rs140840556-C	0.004606	1E-12		0.1364001	[0.099-0.174] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1654073	1654074	rs140840556	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	SIRPB3P	rs140840556-C	0.00461	4E-13		0.14055519	[0.1-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
597	chr20	1654073	1654074	rs140840556	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p13	SIRPB3P	rs140840556-C	0.0061	5E-22		0.2719465	[0.22-0.33] unit decrease	Affymetrix [~ 2500000] (imputed)	N
597	chr20	1684651	1684652	rs1595459	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p13	NR	rs1595459-?	NR	6E-7				Affymetrix [NR]	N
597	chr20	1687449	1687450	rs6135736	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	20p13	LOC105369219	rs6135736-A	NR	6E-8		0.158	[0.1-0.22] unit increase	Illumina [~ 6700000] (imputed)	N
597	chr20	1688843	1688844	rs513201	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	SIRPB1	rs513201-?	NR	3E-6	(TAG 48:0)	0.16470443	[0.096-0.233] unit decrease	Affymetrix [at least 2500000] (imputed)	N
598	chr20	1707840	1707841	rs991958	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p13	LOC100652885	rs991958-?		6E-6				Illumina [4322238] (imputed)	N
598	chr20	1710271	1710272	rs4814511	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C functional antibody titers post childhood immunization	1,585 European ancestry children and adolescents	779 European ancestry children and adolescents	20p13	intergenic	rs4814511-C	NR	4E-7		0.1427	[0.088-0.198] unit increase	Illumina [~ 6700000] (imputed)	N
598	chr20	1711767	1711768	rs113809930	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Diastolic blood pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	20p13	LOC100289473	rs113809930-A		3E-8		3.67	[1.83-5.51] unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
598	chr20	1715108	1715109	rs62189075	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20p13	SIRPG	rs62189075-A	0.0132990581014758	5E-6	(G_Eisenbergiella_HB)	1.09786	[0.62-1.57] unit increase	Illumina [7711310] (imputed)	N
598	chr20	1754968	1754969	rs1012780	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	20p13	NR	rs1012780-C	0.087	2E-6		2.704	[2.29-3.12]	Illumina [10000612] (imputed)	N
598	chr20	1759589	1759590	rs6080550	22197933	Hu Z	2011-12-25	Nat Genet	A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.	Non-obstructive azoospermia	981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls	1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls	20p13	LOC100289473	rs6080550-?	NR	2E-9		1.27	[1.17-1.37]	Affymetrix [587347]	N
598	chr20	1776192	1776193	rs200880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13		rs200880-C	0.797334	2E-9		0.017898405	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
598	chr20	1776192	1776193	rs200880	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	intergenic	rs200880-C	0.7946	1E-10		0.02926572	[0.02-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1791919	1791920	rs200891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	RP5-968J1.1	rs200891-G	0.608004	7E-14		0.017232256	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr20	1791919	1791920	rs200891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	RP5-968J1.1	rs200891-G	0.607994	1E-64		0.04051774	[0.036-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr20	1791919	1791920	rs200891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p13	RP5-968J1.1	rs200891-G	0.6104	5E-10		0.02345385	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1791919	1791920	rs200891	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	RP5-968J1.1	rs200891-G	0.6104	2E-24		0.03873096	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1792088	1792089	rs200890	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative complication after cardiac surgery	Up to 1,163 individuals	NA	20p13	RP5-968J1.1	rs200890-?	NR	1E-6				Illumina [9007469] (imputed)	N
598	chr20	1813372	1813373	rs156353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13		rs156353-C	0.57587	5E-9		0.018325988	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
598	chr20	1814265	1814266	rs35349146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13		rs35349146-G	0.0283	5E-10		0.044338807	[0.03-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr20	1818612	1818613	rs156355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13		rs156355-C	0.462331	9E-22		0.029820617	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
598	chr20	1818612	1818613	rs156355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13		rs156355-C	0.462331	7E-16		0.018388081	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
598	chr20	1818612	1818613	rs156355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13		rs156355-C	0.462345	3E-138		0.058811888	[0.054-0.063] unit increase	Affymetrix [93095623] (imputed)	N
598	chr20	1818612	1818613	rs156355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13		rs156355-C	0.463195	4E-10		0.01439353	[0.0099-0.0189] unit decrease	Affymetrix [93095623] (imputed)	N
598	chr20	1818612	1818613	rs156355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p13	intergenic	rs156355-C	0.463	4E-27		0.04135912	[0.034-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1819279	1819280	rs156356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p13	intergenic	rs156356-C	0.4637	1E-12		0.02674022	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1819279	1819280	rs156356	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	intergenic	rs156356-C	0.4638	8E-66		0.06528941	[0.058-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
598	chr20	1819294	1819295	rs156357	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	20p13	NR	rs156357-?	NR	1E-15		0.04188	[0.032-0.052] unit decrease novel	Illumina [6108953] (imputed)	N
598	chr20	1827654	1827655	rs156333	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	20p13	NR	rs156333-A	0.4841	4E-15		0.0204835	[0.015-0.026] unit increase	Affymetrix [3505788] (imputed)	N
599	chr20	1866644	1866645	rs6111858	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	PDYN	rs6111858-?	NR	5E-6	(UDP glucose; UDP galactose)	0.20852156	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
599	chr20	1883450	1883451	rs6045318	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	20p13		rs6045318-A	0.969724	5E-8		0.0313981	[0.02-0.043] unit decrease	Illumina [13900000] (imputed)	N
599	chr20	1883450	1883451	rs6045318	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	20p13		rs6045318-A	0.966612	7E-7		0.0398757	[0.024-0.056] unit decrease	Illumina [13900000] (imputed)	N
599	chr20	1894334	1894335	rs6075340	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	SIRPA	rs6075340-G	0.63953125	2E-1072	(SIRPA, 5430_66_3)	1.3148746	[1.29-1.34] unit increase	Illumina [> 1000000] (imputed)	N
599	chr20	1895825	1895826	rs17855611	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	NR	rs17855611-A	0.281	2E-822	(Tyrosine-protein phosphatase non-receptor type substrate 1, SIRPA.5430.66.3)	1.29	[1.25-1.33] unit decrease	Affymetrix [10572788] (imputed)	N
599	chr20	1896287	1896288	rs6136377	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIRPA	rs6136377-G	0.369	8E-1361	(Tyrosine-protein phosphatase non-receptor type substrate 1, SIRPA.5430.66.3)	1.21	[1.17-1.25] unit decrease	Affymetrix [10572788] (imputed)	N
599	chr20	1920577	1920578	rs6045559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20p13		rs6045559-?	NR	5E-12				NR [~ 8900000] (imputed)	N
599	chr20	1920577	1920578	rs6045559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	20p13	SIRPA	rs6045559-T	0.3282	4E-11		0.02482653	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1920604	1920605	rs6045561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	SIRPA	rs6045561-C	0.274884	4E-13		0.01817044	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1920604	1920605	rs6045561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	SIRPA	rs6045561-C	0.274869	5E-16		0.020181837	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1921522	1921523	rs4814776	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	20p13	NR	rs4814776-A	0.587859	2E-40		0.03	[0.025-0.035] unit decrease	Affymetrix [23037915] (imputed)	N
599	chr20	1921522	1921523	rs4814776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	SIRPA	rs4814776-A	0.330885	4E-14		0.017804591	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1921522	1921523	rs4814776	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	SIRPA	rs4814776-A	0.330883	2E-195		0.07157443	[0.067-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1921522	1921523	rs4814776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs4814776-C	0.655523	3E-264				Affymetrix, Illumina [17210439] (imputed)	N
599	chr20	1921522	1921523	rs4814776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20p13	NR	rs4814776-C	0.669377	2E-264		0.071363	[0.067-0.075] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
599	chr20	1921522	1921523	rs4814776	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	20p13	NR	rs4814776-A	0.329351	6E-14		0.016096	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
599	chr20	1921522	1921523	rs4814776	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	SIRPA	rs4814776-A	0.3298	9E-69		0.06780917	[0.06-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1922282	1922283	rs6112072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SIRPA	rs6112072-G	0.332512	3E-12		0.016463172	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1922913	1922914	rs4814778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	20p13		rs4814778-C	0.689696	9E-35		0.0444065	[0.037-0.051] unit decrease	Illumina [13478928] (imputed)	N
599	chr20	1922913	1922914	rs4814778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20p13	RP4-684O24.5	rs4814778-C	0.332703	4E-12		0.016337385	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1923270	1923271	rs4814779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p13	RP4-684O24.5	rs4814779-A	0.267	1E-97		0.08640445	[0.078-0.094] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1923733	1923734	rs6136489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	20p13	NR	rs6136489-T	0.307571	9E-35		0.049338	[0.041-0.057] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
599	chr20	1923733	1923734	rs6136489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p13	RP4-684O24.5	rs6136489-G	0.3339	2E-17		0.03221552	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1923733	1923734	rs6136489	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	20p13	SIRPA	rs6136489-T	NR	8E-11		0.01	[0.006-0.014] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
599	chr20	1923972	1923973	rs6136493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6136493-G	0.267351	2E-9		0.015170171	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1923972	1923973	rs6136493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6136493-G	0.267345	1E-14		0.019353054	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1924065	1924066	rs11906768	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	RP4-684O24.5	rs11906768-C	0.26855	2E-80		0.06454193	[0.058-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1924706	1924707	rs13042885	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	20p13	SIRPA, PDYN	rs13042885-?	NR	4E-25		0.04727	[0.038-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
599	chr20	1924706	1924707	rs13042885	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	20p13	SIRPA	rs13042885-C	NR	6E-14		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
599	chr20	1929541	1929542	rs6035126	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	20p13	SIRPA	rs6035126-A	0.019	5E-6		0.176	[0.1-0.25] unit increase	Illumina [747076]	N
599	chr20	1929661	1929662	rs1028397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p13		rs1028397-A	NR	1E-8		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
599	chr20	1929661	1929662	rs1028397	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	20p13		rs1028397-G	0.67	1E-18				Affymetrix [10369434] (imputed)	N
599	chr20	1929661	1929662	rs1028397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	20p13	RP4-684O24.5	rs1028397-A	0.330783	1E-12		0.0162732	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1929661	1929662	rs1028397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs1028397-A	0.405242	5E-11				Affymetrix, Illumina [24246363] (imputed)	N
599	chr20	1929661	1929662	rs1028397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs1028397-A	0.415799	8E-12				Affymetrix, Illumina [21126107] (imputed)	N
599	chr20	1930084	1930085	rs5839925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20p13		rs5839925-C	NR	2E-49		0.0376	[0.033-0.043] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
599	chr20	1930084	1930085	rs5839925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.340899	7E-35		0.0291845	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
599	chr20	1930084	1930085	rs5839925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.340888	3E-45		0.03342996	[0.029-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1930084	1930085	rs5839925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.340867	4E-73		0.042814456	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1930084	1930085	rs5839925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.34087	6E-11		0.015572104	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1930084	1930085	rs5839925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.34	2E-21		0.03609134	[0.029-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1930084	1930085	rs5839925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	20p13	RP4-684O24.5	rs5839925-C	0.34	4E-26		0.04013052	[0.033-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1930703	1930704	rs4470399	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20p13		rs4470399-C	0.738	4E-24				Affymetrix [10369434] (imputed)	N
599	chr20	1930797	1930798	rs4630833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20p13		rs4630833-C	NR	5E-64		0.036	[0.032-0.04] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
599	chr20	1930872	1930873	rs4355178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs4355178-A	0.368474	2E-23				Affymetrix, Illumina [24649327] (imputed)	N
599	chr20	1930884	1930885	rs4618126	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	20p13	RP4-684O24.5	rs4618126-A	0.2627	1E-39		0.05389039	[0.046-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1930896	1930897	rs4411786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20p13	NR	rs4411786-C	0.266122	8E-23		0.02056	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
599	chr20	1930896	1930897	rs4411786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs4411786-C	0.33918	2E-101				Affymetrix, Illumina [23472807] (imputed)	N
599	chr20	1930896	1930897	rs4411786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20p13	NR	rs4411786-C	0.265295	6E-98		0.045103	[0.041-0.049] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
599	chr20	1930896	1930897	rs4411786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p13		rs4411786-?	NR	2E-13				NR [~ 8900000] (imputed)	N
599	chr20	1930896	1930897	rs4411786	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20p13	RP4-684O24.5	rs4411786-C	0.2634	2E-28		0.04592597	[0.038-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1931000	1931001	rs6045612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6045612-T	0.264357	1E-61		0.042414244	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1931000	1931001	rs6045612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6045612-T	0.367394	1E-119				Affymetrix, Illumina [24588908] (imputed)	N
599	chr20	1931000	1931001	rs6045612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p13	NR	rs6045612-T	0.266601	5E-94		0.04276	[0.039-0.047] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
599	chr20	1931000	1931001	rs6045612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6045612-T	0.337843	3E-11				Affymetrix, Illumina [19905671] (imputed)	N
599	chr20	1931000	1931001	rs6045612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	20p13	RP4-684O24.5	rs6045612-T	0.2625	2E-9		0.02377003	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1931581	1931582	rs6045615	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	20p13		rs6045615-A	0.673	2E-25				Affymetrix [10369434] (imputed)	N
599	chr20	1931581	1931582	rs6045615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6045615-C	0.327704	6E-15		0.018578736	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1931581	1931582	rs6045615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6045615-C	0.328541	7E-20		0.02961576	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1931581	1931582	rs6045615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6045615-C	0.327694	1E-13		0.017777128	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1934547	1934548	rs6045639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p13	RP4-684O24.5	rs6045639-G	0.32204	2E-12		0.016904626	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1941170	1941171	rs6045676	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	20p13	PDYN, SIRPA	rs6045676-?	0.36	3E-8		0.1147	[0.070-0.159] cm increase	Affymetrix [NR]	N
599	chr20	1947278	1947279	rs1539189	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	20p13	NR	rs1539189-?	NR	1E-6	(AA)	7.35	[6.02-8.68]	Illumina [905956]	N
599	chr20	1950919	1950920	rs185387034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	RP4-684O24.5	rs185387034-G	0.009521	6E-21		0.118423626	[0.094-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1950919	1950920	rs185387034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p13	RP4-684O24.5	rs185387034-G	0.009517	2E-20		0.116474785	[0.092-0.141] unit decrease	Affymetrix [93095623] (imputed)	N
599	chr20	1950919	1950920	rs185387034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p13	RP4-684O24.5	rs185387034-G	0.0102	2E-10		0.1289908	[0.089-0.169] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1950919	1950920	rs185387034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p13	RP4-684O24.5	rs185387034-G	0.0102	3E-10		0.1265124	[0.087-0.166] unit decrease	Affymetrix [~ 2500000] (imputed)	N
599	chr20	1952554	1952555	rs80214359	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20p13		rs80214359-?	NR	8E-6		1.07244	[1.04-1.1]	NR [688737]	N
599	chr20	1963994	1963995	rs45503795	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PDYN-AS1	rs45503795-?	NR	4E-8		0.906458	[NR] unit decrease	Affymetrix [NR] (imputed)	N
600	chr20	1995533	1995534	rs6081597	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	20p13	PDYN	rs6081597-?		7E-7	(Hispanic)			Illumina [NR]	N
600	chr20	2021001	2021002	rs147313374	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females, 3,931 Sub-Saharan African ancestry males	NA	20p13		rs147313374-G	0.978205	2E-6		0.0263062	[0.0075-0.0451] unit increase	Illumina [7666802] (imputed)	N
600	chr20	2021622	2021623	rs1578568	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	Triglyceride levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	20p13	RP4-684O24.5	rs1578568-A	NR	1E-6		11.71	[7.11-16.31] unit increase	Illumina [NR] (imputed)	N
600	chr20	2042351	2042352	rs191335472	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20p13	Intergenic	rs191335472-A	0.999	3E-6	(AA)	0.482	unit increase	Illumina [NR] (imputed)	N
600	chr20	2047817	2047818	rs6136898	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	PDYN	rs6136898-?	NR	9E-7	(LPE 16:0)	0.19431096	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
600	chr20	2047965	2047966	rs6081825	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	PDYN	rs6081825-?	NR	9E-6	(LPE 18:2)	0.17472522	[0.098-0.252] unit increase	Affymetrix [at least 2500000] (imputed)	N
600	chr20	2074322	2074323	rs6112821	24811271	Kennedy RB	2014-05-09	Immunogenetics	Genome-wide SNP associations with rubella-specific cytokine responses in measles-mumps-rubella vaccine recipients.	Immune response to measles-mumps-rubella vaccine	883 European ancestry individuals	NA	20p13	STK35, PDYN	rs6112821-?		3E-7	(IFN gamma response)			Illumina [NR]	N
600	chr20	2075532	2075533	rs6046747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p13		rs6046747-G	NR	2E-8		0.0123	[0.008-0.0166] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
600	chr20	2075532	2075533	rs6046747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	20p13	NR	rs6046747-G	NR	8E-10		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
600	chr20	2076293	2076294	rs6106210	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	20p13	STK35	rs6106210-T	NR	3E-11		0.172	[0.12-0.22] unit increase	Affymetrix [7701190] (imputed)	N
600	chr20	2077743	2077744	rs1418032	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	PDYN	rs1418032-?	NR	8E-6	(PC 36:4)	0.16522247	[0.093-0.238] unit increase	Affymetrix [at least 2500000] (imputed)	N
600	chr20	2077743	2077744	rs1418032	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	PDYN	rs1418032-?	NR	4E-6	(PC 32:0)	0.17179236	[0.098-0.245] unit increase	Affymetrix [at least 2500000] (imputed)	N
600	chr20	2094077	2094078	rs6075658	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p13	STK35	rs6075658-T	0.530781	7E-10		0.00848906	[0.0058-0.0112] unit increase	Affymetrix [12370749]	N
600	chr20	2095266	2095267	rs766616225	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	STK35	rs766616225-C	2.6499999999996E-4	1E-10		0.53249735	[0.37-0.69] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr20	2100094	2100095	rs6137042	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20p13	NR	rs6137042-G	0.697	2E-8		0.0263	[0.017-0.036] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
601	chr20	2100627	2100628	rs7266553	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20p13	NR	rs7266553-T	NR	6E-12		0.0168	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
601	chr20	2106354	2106355	rs6112930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20p13		rs6112930-A	NR	3E-8		0.0119	[0.0078-0.016] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
601	chr20	2112389	2112390	rs35354551	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (characteristic path length)	57 European ancestry individuals	NA	20p13	NR	rs35354551-C	NR	1E-7		1.107	unit decrease	NR [9015039] (imputed)	N
601	chr20	2121248	2121249	rs6137103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p13	STK35	rs6137103-A	NR	2E-8		0.0186504	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
601	chr20	2127683	2127684	rs11087326	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p13	STK35	rs11087326-?		1E-12				Affymetrix, Illumina [NR] (imputed)	N
601	chr20	2129906	2129907	rs6047046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p13		rs6047046-?	NR	6E-8				NR [~ 8900000] (imputed)	N
601	chr20	2130523	2130524	rs6113006	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	TGM3	rs6113006-?	NR	3E-6	(PC 36:3)	0.17813012	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
601	chr20	2132897	2132898	rs927156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	TGM3	rs927156-?	NR	3E-7	(PC 38:2)	0.19702318	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
601	chr20	2138321	2138322	rs6113029	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs6113029-G	0.77488	2E-11		0.0712458	[0.05-0.093] increase	Affymetrix [11014269] (imputed)	N
601	chr20	2146535	2146536	rs6047164	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	TGM3	rs6047164-?	NR	4E-6	(LPC 22:6)	0.2434026	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
601	chr20	2156398	2156399	rs1575126	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20p13	STK35	rs1575126-C	0.407807	3E-8		0.062399168	[0.04-0.084] unit decrease	Affymetrix [7260263] (imputed)	N
601	chr20	2187835	2187836	rs560600212	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p13	RP11-128M1.1	rs560600212-T	5.97999999999987E-4	2E-11		0.47624338	[0.34-0.61] unit decrease	Affymetrix [93095623] (imputed)	N
601	chr20	2220309	2220310	rs59586681	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	20p13	TGM3	rs59586681-T	0.61	3E-9		1.16	[1.11-1.22]	Illumina [38500000] (imputed)	N
601	chr20	2225868	2225869	rs13040824	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Diastolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	20p13	intergenic	rs13040824-?	NR	9E-7	(Pre-puberty)	0.902	[0.054-0.127] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
602	chr20	2230335	2230336	rs6137442	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20p13	RP11-128M1.1	rs6137442-T	0.361945	7E-18		1.08	[1.06-1.10]	Affymetrix [7600000] (imputed)	N
602	chr20	2235469	2235470	rs6113392	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20p13	TGM3	rs6113392-A	0.439823	5E-20		0.1027148	[0.081-0.125] unit decrease	Affymetrix [7260263] (imputed)	N
602	chr20	2262536	2262537	rs6082600	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20p13	TGM3	rs6082600-T	NR	1E-18		1.25	[1.19-1.32]	Affymetrix [5734850] (imputed)	N
602	chr20	2281969	2281970	rs214782	25855136	Stacey SN	2015-04-09	Nat Commun	New basal cell carcinoma susceptibility loci.	Basal cell carcinoma	4,572 European ancestry cases, 266,358 European ancestry controls	up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls	20p13	TGM3	rs214782-G	0.171	2E-13		1.28	[NR]	Illumina [24988228] (imputed)	N
602	chr20	2281969	2281970	rs214782	24403052	Stacey SN	2014-01-08	Hum Mol Genet	Germline sequence variants in TGM3 and RGS22 confer risk of basal cell carcinoma.	Basal cell carcinoma	4,208 European ancestry cases, 109,408 European ancestry controls	up to 1,480 European ancestry cases, up to 4,610 European ancestry controls	20p13	TGM3	rs214782-G	0.17	6E-17		1.29	[1.22-1.37]	Illumina [38500000] (imputed)	N
602	chr20	2283456	2283457	rs214785	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	20p13	TGM3	rs214785-C	0.18	8E-33		1.19	[NR]	Illumina [at least 560000] (imputed)	N
602	chr20	2285704	2285705	rs214793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	20p13		rs214793-T	NR	1E-34		0.1537	[0.13-0.18] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
602	chr20	2290332	2290333	rs214803	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20p13		rs214803-?	NR	6E-44		1.20445	[1.18-1.23]	NR [685523]	N
602	chr20	2290332	2290333	rs214803	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20p13		rs214803-?	NR	4E-12		1.06295	[1.05-1.08]	NR [688737]	N
602	chr20	2290332	2290333	rs214803	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20p13	TGM3	rs214803-C	0.179593	1E-59		0.21616812	[0.19-0.24] unit increase	Affymetrix [7260263] (imputed)	N
602	chr20	2290332	2290333	rs214803	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20p13	TGM3	rs214803-C	0.179072	6E-66		1.2	[1.17-1.22]	Affymetrix [7600000] (imputed)	N
602	chr20	2290332	2290333	rs214803	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	20p13	TGM3	rs214803-C	0.1836	3E-81		1.2195122	[1.19-1.25]	Affymetrix, Illumina [up to 9061544] (imputed)	N
602	chr20	2306311	2306312	rs1012621	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	20p13	TGM3	rs1012621-?	NR	5E-6	(Shared)			Affymetrix, Illumina [~ 5200000]	N
602	chr20	2313905	2313906	rs126635	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	TGM6	rs126635-?	NR	4E-6	(glycerol)	6.0770044	[3.49-8.66] unit increase	Affymetrix [at least 2500000] (imputed)	N
602	chr20	2321104	2321105	rs214830	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20p13	TGM3	rs214830-G	0.371612	1E-11		0.077058256	[0.055-0.099] unit decrease	Affymetrix [7260263] (imputed)	N
602	chr20	2321362	2321363	rs214831	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20p13	TGM3	rs214831-G	0.608868	1E-12		1.06	[1.05-1.08]	Affymetrix [7600000] (imputed)	N
602	chr20	2354192	2354193	rs6132559	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	20p13	TGM6	rs6132559-C	NR	3E-6		5.6118593	[3.3-7.93] unit decrease	Illumina [> 6200000] (imputed)	N
603	chr20	2379597	2379598	rs6114027	30287856	Zheng R	2018-10-04	Nat Commun	Genome-wide association study identifies two risk loci for tuberculosis in Han Chinese.	Tuberculosis	833 Han Chinese ancestry cases, 1,220 Han Chinese ancestry controls	2,116 Han Chinese ancestry cases, 3,870 Han Chinese ancestry controls	20p13	TGM6	rs6114027-C	0.158	2E-11		1.339	[1.229-1.459]	Affymetrix [5374021] (imputed)	N
603	chr20	2384971	2384972	rs34972666	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		20p13	TGM6	rs34972666-?	0.11	3E-8		0.23	unit decrease	Illumina [NR] (imputed)	N
603	chr20	2473586	2473587	rs41308639	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	20p13	ZNF343	rs41308639-?	NR	7E-6		1.226112	[1.122078-1.339792]	Illumina [at least 4756722] (imputed)	N
604	chr20	2491208	2491209	rs6036759	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	20p13	ZNF343, TMC2	rs6036759-A	0.41	2E-6		0.07	[0.05-0.09] unit increase	Illumina [~ 8300000] (imputed)	N
604	chr20	2518564	2518565	rs6049839	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	20p13	TMC2	rs6049839-T	0.40	8E-6	(case-only)	1.37	[1.19-1.58]	Illumina [421318] (imputed)	N
604	chr20	2575368	2575369	rs6050469	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p13	TMC2	rs6050469-A	0.011	2E-6	(Height change )	0.03	[NR] cm/y increase	Illumina [899892]	N
604	chr20	2607518	2607519	rs2207152	28011710	Benyamin B	2016-12-22	Hum Mol Genet	Identification of novel loci affecting circulating chromogranins and related peptides.	Circulating chromogranin peptide levels	up to 540 European American and Mexican American individuals, up to 1,267 individuals	NA	20p13	intergenic	rs2207152-?	NR	4E-6	(CHGA361-372)	0.236	[0.14-0.34] unit decrease	Illumina [at least 2587527] (imputed)	N
605	chr20	2647039	2647040	rs6132905	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	20p13	NR	rs6132905-?	NR	6E-6		0.0727	[0.041-0.104] unit decrease	Illumina [at least 560000] (imputed)	N
605	chr20	2669734	2669735	rs6037338	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	20p13	EBF4	rs6037338-C	0.1718	5E-6	(African)			Illumina [4404269] (imputed)	N
605	chr20	2736103	2736104	rs13042767	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF2RB	5,362 Icelandic ancestry individuals	NA	20p13		rs13042767-C	0.04915	4E-26		0.452156	[0.37-0.54] unit decrease	Illumina [7506463] (imputed)	N
605	chr20	2736103	2736104	rs13042767	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	20p13		rs13042767-C	0.04915	1E-61		0.708125	[0.62-0.79] unit decrease	Illumina [7506463] (imputed)	N
605	chr20	2736558	2736559	rs146283583	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	20p13	NR	rs146283583-T	NR	5E-6		0.326	[0.19-0.47] unit increase	Illumina [6319684] (imputed)	N
606	chr20	2755487	2755488	rs6138892	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	20p13	intergenic	rs6138892-?	0.15	3E-7	(CTJC , EA, RF-)	10.93	[NR] unit increase	Illumina [534053]	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	7E-10				NR [NR] (imputed)	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	6E-10		0.35	[-0.0028-0.7028] unit decrease	NR [NR] (imputed)	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	2E-9				NR [NR] (imputed)	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	4E-10		2.1	[1.43-2.77] unit increase	NR [NR] (imputed)	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	5E-8				NR [NR] (imputed)	N
606	chr20	2762548	2762549	rs117658905	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117658905-A	0.99	3E-8		1.94	[1.25-2.63] unit increase	NR [NR] (imputed)	N
606	chr20	2770534	2770535	rs56054109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p13		rs56054109-?	NR	1E-8				NR [~ 8900000] (imputed)	N
606	chr20	2780150	2780151	rs215543	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	20p13	CPXM1	rs215543-?	NR	2E-8		0.0845	[0.055-0.114] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
606	chr20	2780150	2780151	rs215543	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20p13	CPXM1	rs215543-G	0.2314	2E-10		0.1034	[0.071-0.136] unit increase	Affymetrix [~ 11900000] (imputed)	N
606	chr20	2780682	2780683	rs34211052	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20p13	CPXM1	rs34211052-G	0.9027	2E-9		0.133	[0.086-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
606	chr20	2780762	2780789	rs67159741	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	CPXM1	rs67159741-G	0.1	1E-57	(Probable carboxypeptidase X1, CPXM1.6255.74.3)	0.64	[0.56-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
606	chr20	2780833	2780834	rs76013335	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20p13	CPXM1	rs76013335-T	0.0148690930660665	1E-6	(G_Parasutterella_RNT)	0.51105	[0.3-0.72] unit increase	Illumina [7711310] (imputed)	N
606	chr20	2782759	2782760	rs34181543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20p13		rs34181543-C	NR	7E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
606	chr20	2783770	2783771	rs13043754	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NR3C2	5,364 Icelandic ancestry individuals	NA	20p13		rs13043754-G	0.1051	1E-17		0.259462	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
606	chr20	2783770	2783771	rs13043754	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF2RB	5,362 Icelandic ancestry individuals	NA	20p13		rs13043754-G	0.1051	4E-45		0.425351	[0.37-0.48] unit decrease	Illumina [7506463] (imputed)	N
606	chr20	2783770	2783771	rs13043754	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	20p13		rs13043754-G	0.1051	5E-116		0.678361	[0.62-0.74] unit decrease	Illumina [7506463] (imputed)	N
606	chr20	2783770	2783771	rs13043754	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	NR	rs13043754-A	0.89390625	6E-77	(CPXM1, 6255_74_3)	0.74091095	[0.66-0.82] unit increase	Illumina [> 1000000] (imputed)	N
606	chr20	2783770	2783771	rs13043754	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	NR	rs13043754-A	0.89390625	4E-11	(NR3C2, 12931_16_3)	0.26598075	[0.19-0.34] unit increase	Illumina [> 1000000] (imputed)	N
606	chr20	2783770	2783771	rs13043754	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	NR	rs13043754-A	0.89390625	2E-30	(CSF2RB, 11137_43_3)	0.460803	[0.38-0.54] unit increase	Illumina [> 1000000] (imputed)	N
606	chr20	2784052	2784053	rs13036662	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	20p13	CPXM1	rs13036662-?	NA	3E-8		2.11	[1.37-2.85] unit decrease	Affymetrix [5541230] (imputed)	N
606	chr20	2784258	2784259	rs74180375	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	20p13		rs74180375-A	0.06886	1E-28		0.415686	[0.34-0.49] unit increase	Illumina [7506463] (imputed)	N
606	chr20	2793062	2793063	rs2143635	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	20p13	TMEM239	rs2143635-T	0.8996	5E-11		0.2304	[0.16-0.3] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
606	chr20	2799896	2799897	rs58625759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20p13		rs58625759-A	NR	5E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
606	chr20	2799896	2799897	rs58625759	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20p13	TMEM239	rs58625759-A	0.201	2E-8		0.0022	[0.0014-0.003] unit increase	Affymetrix [NR] (imputed)	N
606	chr20	2800800	2800801	rs7360412	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	20p13	TMEM239, C20orf141	rs7360412-?	0.06	7E-6				Illumina [565404]	N
606	chr20	2800961	2800962	rs143302938	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs143302938-A	0.987226	4E-8		0.227994	[0.15-0.31] decrease	Affymetrix [11014269] (imputed)	N
606	chr20	2815714	2815715	rs4813619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs4813619-T	0.569279	4E-18				Affymetrix, Illumina [23467995] (imputed)	N
606	chr20	2815714	2815715	rs4813619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20p13	NR	rs4813619-T	0.510832	4E-18		0.016505	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
606	chr20	2844469	2844469	rs11473328	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p13	VPS16	rs11473328-GAGAA	0.502242	4E-11		0.0148978215	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
606	chr20	2845129	2845130	rs730819	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p13	NR	rs730819-?	NR	2E-43				Affymetrix [NR]	N
606	chr20	2882930	2882931	rs6138937	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20p13	NR	rs6138937-?	NR	2E-9	(left pallidum)			NR [9227495] (imputed)	N
607	chr20	2893955	2893956	rs605519	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p13	PTPRA	rs605519-G	0.492892	1E-15		0.017745998	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
607	chr20	2894789	2894790	rs619450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs619450-C	0.550276	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
607	chr20	2897419	2897420	rs6138948	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	VPS16	rs6138948-?	NR	5E-6	(PC 38:6)	0.15594552	[0.089-0.223] unit decrease	Affymetrix [at least 2500000] (imputed)	N
607	chr20	2897419	2897420	rs6138948	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	VPS16	rs6138948-?	NR	4E-6	(PC 40:6)	0.15758784	[0.091-0.224] unit decrease	Affymetrix [at least 2500000] (imputed)	N
607	chr20	2899978	2899979	rs681167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs681167-A	0.592277	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
607	chr20	2904142	2904143	rs633284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p13	PTPRA	rs633284-T	0.516331	1E-11		0.015153454	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
607	chr20	2904142	2904143	rs633284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20p13	PTPRA	rs633284-T	0.516325	1E-12		0.015951114	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
607	chr20	2904142	2904143	rs633284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20p13	NR	rs633284-T	0.516357	3E-12		0.013031	[0.0094-0.0167] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
607	chr20	2904142	2904143	rs633284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20p13	NR	rs633284-T	0.516133	2E-13		0.014955	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
607	chr20	2904142	2904143	rs633284	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p13		rs633284-?	NR	5E-8				NR [~ 8900000] (imputed)	N
607	chr20	2961407	2961408	rs6037443	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20p13	NR	rs6037443-?	NR	2E-8	(left pallidum)			NR [9227495] (imputed)	N
607	chr20	2986304	2986306	rs747271405	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20p13	PTPRA	rs747271405-CAG	0.9951	4E-6		0.3838	[0.22-0.55] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr20	3008774	3008775	rs615568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	PTPRA	rs615568-T	0.505902	1E-15		0.017941445	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr20	3008774	3008775	rs615568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	PTPRA	rs615568-T	0.505919	1E-10		0.01433931	[0.01-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr20	3008774	3008775	rs615568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	PTPRA	rs615568-T	0.505916	1E-11		0.015137411	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
607	chr20	3008774	3008775	rs615568	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p13	NA	rs615568-T	0.52	4E-9		0.0101	[0.0068-0.0134] unit decrease	NR [~ 27400000] (imputed)	N
607	chr20	3012814	3012815	rs6076463	34782459	Shevchenko AK	2021-11-01	Proc Natl Acad Sci U S A	Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population.	HIV-1 susceptibility	256 Sub-Saharan African ancestry cases, 80 Sub-Saharan African ancestry controls	NA	20p13		rs6076463-T	NR	8E-7		0.172		NR [8636400]	N
607	chr20	3013353	3013354	rs12151862	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	NR	rs12151862-A	0.77390625	6E-9	(OXT, 8356_88_3)	0.17708777	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
607	chr20	3013353	3013354	rs12151862	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	GNRH2	rs12151862-A	0.77390625	5E-6	(GNRH2, 10708_3_3)	0.13640182	[0.078-0.195] unit increase	Illumina [> 1000000] (imputed)	N
608	chr20	3016894	3016895	rs3787480	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	GNRH2	rs3787480-A	0.149	2E-12	(Progonadoliberin-2, GNRH2.10708.3.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr20	3021136	3021137	rs6115763	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OXT	5,368 Icelandic ancestry individuals	NA	20p13		rs6115763-T	0.1433	2E-28		0.294895	[0.24-0.35] unit decrease	Illumina [7506463] (imputed)	N
608	chr20	3024913	3024914	rs6115764	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	20p13	NR	rs6115764-C	0.1216	4E-7		0.8907	[0.44-1.34] unit decrease	Illumina [at least 567677] (imputed)	N
608	chr20	3033258	3033259	rs12625893	31361301	Weingarten MFJ	2019-07-30	J Clin Endocrinol Metab	Circulating oxytocin is genetically determined and associated with obesity and impaired glucose tolerance.	Serum oxytocin levels	951 Sorbian ancestry individuals	NA	20p13	OXT	rs12625893-A	0.25	3E-8		0.2	[NR] unit increase	Affymetrix [NR] (imputed)	N
608	chr20	3039218	3039219	rs11476520	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	20p13	NR	rs11476520-G	0.275	4E-6		0.1575	[0.091-0.224] unit increase	Illumina [10677593] (imputed)	N
608	chr20	3049889	3049890	rs877172	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein OXT	5,368 Icelandic ancestry individuals	NA	20p13		rs877172-G	0.3382	3E-241		0.616928	[0.58-0.65] unit increase	Illumina [7506463] (imputed)	N
608	chr20	3049889	3049890	rs877172	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p13	OXT	rs877172-T	0.66046875	6E-156	(OXT, 8356_88_3)	0.66924286	[0.62-0.72] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr20	3050392	3050393	rs3761248	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	20p13	intergenic	rs3761248-C	0.18	3E-6	(female)	0.107	[0.062-0.152] unit decrease	Illumina [6380737] (imputed)	N
608	chr20	3067253	3067254	rs61138008	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	20p13	NR	rs61138008-?	NR	4E-6		1.5243	[0.94-2.11] unit decrease	Affymetrix [7154205] (imputed)	N
608	chr20	3080351	3080352	rs2422841	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	20p13	NR	rs2422841-G		5E-6		0.1657	[0.095-0.236] SD units increase	NR [10700000] (imputed)	N
608	chr20	3099751	3099752	rs306755	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	20p13	UBOX5-AS1, UBOX5	rs306755-C	0.4714	7E-10		0.012492657	[0.0085-0.0165] unit increase	Affymetrix [up to 18485882] (imputed)	N
608	chr20	3099751	3099752	rs306755	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	20p13	UBOX5-AS1, UBOX5	rs306755-C	NR	4E-9		0.011925	[0.008-0.0159] unit increase	Affymetrix [18485882] (imputed)	N
608	chr20	3099751	3099752	rs306755	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20p13	NR	rs306755-C	0.465428546970752	3E-8		0.005092189	[0.0033-0.0069] unit decrease	NR [NR]	N
608	chr20	3119554	3119555	rs857252	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p13	NR	rs857252-?	NR	8E-6		4.461	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
608	chr20	3125016	3125017	rs857253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20p13		rs857253-G	NR	1E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
608	chr20	3130589	3130590	rs2255158	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	20p13	UBOX5-AS1, UBOX5, FASTKD5	rs2255158-G	NR	1E-8		0.011484	[0.0075-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
608	chr20	3132620	3132621	rs860735	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	20p13	UBOX5, FASTKD5	rs860735-C	0.3669	3E-9		0.0125354305	[0.0084-0.0167] unit increase	Affymetrix [up to 18485882] (imputed)	N
608	chr20	3140303	3140304	rs4815570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p13		rs4815570-?	NR	2E-8				NR [~ 8900000] (imputed)	N
609	chr20	3164685	3164686	rs2295545	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	20p13	DDRGK1	rs2295545-T	0.6105	8E-11		0.0622	[0.043-0.081] unit increase	NR [7784415] (imputed)	N
609	chr20	3168165	3168166	rs8118008	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	20p13	DDRGK1	rs8118008-A	0.609	2E-6		1.07	[1.04-1.09]	Illumina [11933700] (imputed)	N
609	chr20	3168165	3168166	rs8118008	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	20p13	DDRGK1	rs8118008-A	0.657	3E-11		1.111	[1.08-1.14]	Illumina [7893274] (imputed)	N
609	chr20	3171336	3171337	rs11591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p13	NR	rs11591-T	NR	5E-10		0.0194	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
609	chr20	3171336	3171337	rs11591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p13	NR	rs11591-T	NR	3E-9		0.0185	[0.012-0.025] unit increase	Affymetrix [9000000] (imputed)	N
609	chr20	3172489	3172490	rs73075075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p13		rs73075075-G	NR	4E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
609	chr20	3174104	3174105	rs6515773	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p13	DDRGK1, ITPA, UBOX5, FASTKD5, SLC4A11, UBOX5-AS1	rs6515773-T	NR	9E-6	(sleep onset irregularity, weekdays)	0.04748	[0.026-0.068] unit increase	Affymetrix [7141204] (imputed)	N
609	chr20	3180053	3180054	rs8113963	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20p13	DDRGK1	rs8113963-C	0.832092	2E-16		0.00536231	[0.004-0.0067] unit decrease	Affymetrix [13995440] (imputed)	N
609	chr20	3182001	3182002	rs145778765	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	20p13	NR	rs145778765-C	NR	2E-6		0.7993	[0.47-1.13] SD units increase	NR [10700000] (imputed)	N
609	chr20	3185122	3185123	rs11697186	21659334	Tanaka Y	2011-06-09	Hum Mol Genet	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	DDRGK1	rs11697186-T	0.15	5E-17	(Decrease of PLT)	4.5	[3.10-6.50]	Affymetrix [595052]	N
609	chr20	3185122	3185123	rs11697186	21659334	Tanaka Y	2011-06-09	Hum Mol Genet	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	DDRGK1	rs11697186-A	0.85	9E-25	(Change in Hb)	33.33	[12.50-100]	Affymetrix [595052]	N
609	chr20	3187732	3187733	rs6139030	21659334	Tanaka Y	2011-06-09	Hum Mol Genet	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	ITPA	rs6139030-T	0.83	2E-25	(Change of Hb)	25.0	[11.11-50.0]	Affymetrix [595052]	N
609	chr20	3187732	3187733	rs6139030	21659334	Tanaka Y	2011-06-09	Hum Mol Genet	Genome-wide association study identified ITPA/DDRGK1 variants reflecting thrombocytopenia in pegylated interferon and ribavirin therapy for chronic hepatitis C.	Response to hepatitis C treatment	303 Japanese ancestry cases	391 Japanese ancestry cases	20p13	ITPA	rs6139030-C	0.17	1E-15	(Decrease of PLT)	3.9	[2.80-5.50]	Affymetrix [595052]	N
609	chr20	3193841	3193842	rs1127354	20637204	Ochi H	2010-07-13	Gastroenterology	ITPA polymorphism affects ribavirin-induced anemia and outcomes of therapy--a genome-wide study of Japanese HCV virus patients.	Ribavirin-induced anemia	453 Japanese ancestry individuals	470 Japanese ancestry individuals	20p13	DDRGK1, ITPA	rs1127354-A	NR	4E-44				Illumina [510537]	N
609	chr20	3193841	3193842	rs1127354	20173735	Fellay J	2010-02-21	Nature	ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C.	Chronic hepatitis C infection	988 European ancestry cases, 198 African American cases, 100 Hispanic cases	NA	20p13	ITPA	rs1127354-A	0.069	2E-58				Illumina [565759]	N
609	chr20	3193892	3193893	rs7270101	20173735	Fellay J	2010-02-21	Nature	ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C.	Chronic hepatitis C infection	988 European ancestry cases, 198 African American cases, 100 Hispanic cases	NA	20p13	ITPA	rs7270101-C	0.11	9E-76				Illumina [565759]	N
609	chr20	3199702	3199703	rs2422862	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	20p13	DDRGK1, ITPA, SLC4A11	rs2422862-?	NR	3E-7	(African)	0.3199	[0.21-0.43] unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr20	3203113	3203114	rs6084309	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	20p13	ITPA	rs6084309-C	0.854	4E-9		0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
609	chr20	3209082	3209083	rs41281858	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p13	LZTS3, DDRGK1, ITPA, SLC4A11	rs41281858-?		6E-11				Affymetrix, Illumina [NR] (imputed)	N
609	chr20	3209210	3209211	rs764272881	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	20p13	SLC4A11	rs764272881-G		5E-8	(additive)	1.81	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
609	chr20	3211303	3211304	rs41281862	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs41281862-G	0.866763	5E-10		0.083869	[0.057-0.111] decrease	Affymetrix [11014269] (imputed)	N
609	chr20	3213908	3213909	rs117725082	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC4A11	rs117725082-?	NR	3E-8		0.852201	[NR] unit increase	Affymetrix [NR] (imputed)	N
609	chr20	3214580	3214581	rs3803956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	SLC4A11	rs3803956-T	0.191739	9E-10		0.017481463	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
609	chr20	3237673	3237674	rs2007022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p13		rs2007022-?	NR	2E-14				NR [~ 8900000] (imputed)	N
609	chr20	3241360	3241361	rs142163722	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	20p13	NR	rs142163722-T		3E-7		0.344	[NR] unit increase	Illumina [NR]	N
609	chr20	3249462	3249463	rs6037523	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20p13	NR	rs6037523-T	0.232814	3E-11		0.014728	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
609	chr20	3266318	3266319	rs2236096	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p13	C20orf194	rs2236096-T	0.7673	1E-15		0.018	[0.013-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
610	chr20	3305209	3305210	rs6139076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20p13	NR	rs6139076-C	0.232814	4E-11		0.014609	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
610	chr20	3325991	3325992	rs6084342	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p13		rs6084342-A	0.47	6E-9		5.82	z score increase	Affymetrix [9061022] (imputed)	N
610	chr20	3336218	3336218	rs573380326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	C20orf194	rs573380326-CA	0.220892	1E-9		0.016659271	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
610	chr20	3348406	3348407	rs6084352	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	20p13	C20orf194, SLC4A11, ATRN	rs6084352-G	0.3	7E-6	(Japanese)	1.31	[1.16-1.47]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
610	chr20	3364936	3364937	rs149362911	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p13	NR	rs149362911-C	0.01045	5E-10	(GATM)	3.725	NR unit increase	Illumina [1671387] (imputed)	N
610	chr20	3381548	3381549	rs965469	21703177	Thompson AJ	2011-05-20	J Hepatol	Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients.	IFN-related cytopenia	984 European ancestry with genotype 1 HCV cases, 201 African American genotype 1 HCV cases, 99 Hispanic genotype 1 HCV cases	NA	20p13	ITPA	rs965469-?	NR	1E-9	(IFN-related thrombocytopenia at wk 4)			Illumina [565759]	N
610	chr20	3386481	3386482	rs6051836	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6051836-T	0.209624	7E-10				Affymetrix, Illumina [24653286] (imputed)	N
611	chr20	3411052	3411053	rs73084982	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	20p13	intergenic	rs73084982-?		2E-7		0.92	[0.57-1.27] unit increase	Illumina [8426597] (imputed)	N
611	chr20	3457615	3457616	rs171165	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	20p13	ATRN, C20orf194, LOC100131194	rs171165-A	0.003	1E-6		11.49	[3.29-40.16]	Illumina [1556551]	N
612	chr20	3580390	3580391	rs78446054	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPXM1	5,363 Icelandic ancestry individuals	NA	20p13		rs78446054-T	0.1159	7E-17		0.247484	[0.19-0.31] unit decrease	Illumina [7506463] (imputed)	N
612	chr20	3608928	3608928	rs73616154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p13	ATRN	rs73616154-A	0.208394	4E-11		0.01813754	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3618312	3618313	rs2595588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20p13		rs2595588-A	NR	2E-8		0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
612	chr20	3618312	3618313	rs2595588	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Postcentral gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p13	ATRN	rs2595588-?		3E-7				Illumina [4322238] (imputed)	N
612	chr20	3624092	3624093	rs2595583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	ATRN	rs2595583-A	0.395516	3E-23		0.02268294	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3626988	3626989	rs2853203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20p13	ATRN	rs2853203-A	0.3363	5E-11		0.02498324	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr20	3626988	3626989	rs2853203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20p13	ATRN	rs2853203-A	0.3363	1E-12		0.02702108	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr20	3626988	3626989	rs2853203	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20p13	ATRN	rs2853203-A	0.3363	8E-10		0.0233628	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
612	chr20	3629253	3629254	rs2250106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	ATRN	rs2250106-G	0.39597	5E-20		0.021074345	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3629253	3629254	rs2250106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	ATRN	rs2250106-G	0.395957	4E-25		0.023463571	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3629253	3629254	rs2250106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	ATRN	rs2250106-G	0.395945	1E-23		0.022861976	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3636928	3636929	rs17711842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p13	NR	rs17711842-T	NR	2E-10		0.0329	[0.023-0.043] unit increase	Affymetrix [9000000] (imputed)	N
612	chr20	3651225	3651226	rs44707	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p13	ADAM33	rs44707-T	0.593475	1E-9		0.0137116825	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3662141	3662142	rs554743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	ADAM33	rs554743-T	0.693733	2E-11		0.016524322	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
612	chr20	3662141	3662142	rs554743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs554743-T	0.684246	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
612	chr20	3662141	3662142	rs554743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20p13	NR	rs554743-T	0.696486	8E-12		0.014312	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
612	chr20	3662141	3662142	rs554743	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p13		rs554743-?	NR	2E-12				NR [~ 8900000] (imputed)	N
612	chr20	3664804	3664805	rs601081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	ADAM33	rs601081-C	0.819579	3E-13		0.021203341	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr20	3670060	3670061	rs3746634	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	20p13		rs3746634-A	0.3921	3E-16		0.157931	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
613	chr20	3672045	3672046	rs143489222	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	20p13		rs143489222-?	NR	6E-23		0.131256	[0.1-0.16] unit increase	NR [9800000] (imputed)	N
613	chr20	3672045	3672046	rs143489222	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p13	NR	rs143489222-T	NR	5E-11		0.1086	[0.076-0.141] unit increase	Affymetrix [9000000] (imputed)	N
613	chr20	3673295	3673296	rs200137244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	20p13		rs200137244-G	0.012008	5E-9		0.0933273	[0.062-0.125] unit increase	Illumina [13476165] (imputed)	N
613	chr20	3673642	3673643	rs146007898	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	20p13		rs146007898-?	NR	1E-9		0.136636	[0.089-0.184] unit increase	NR [9800000] (imputed)	N
613	chr20	3675332	3675333	rs3746638	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	20p13	SIGLEC1	rs3746638-G	NR	6E-6	(adjusted for subcutaneous fat)	0.071	[0.04-0.102] unit increase	Illumina [8511049] (imputed)	N
613	chr20	3675898	3675899	rs754526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC12	5,367 Icelandic ancestry individuals	NA	20p13		rs754526-A	0.06321	1E-20		0.352129	[0.28-0.43] unit increase	Illumina [7506463] (imputed)	N
613	chr20	3676787	3676788	rs527942	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIGLEC1	rs527942-C	0.556	1E-12	(Protocadherin alpha-4, PCDHA4.7157.22.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
613	chr20	3677095	3677095	rs11471725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SIGLEC1	rs11471725-TGCTG	0.600326	1E-12		0.016522132	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3681398	3681399	rs4813634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20p13		rs4813634-C	NR	5E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
613	chr20	3681635	3681636	rs488023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs488023-G	0.68798	4E-11				Affymetrix, Illumina [23472807] (imputed)	N
613	chr20	3682010	3682011	rs1018493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs1018493-A	0.614043	6E-10				Affymetrix, Illumina [24588908] (imputed)	N
613	chr20	3682125	3682126	rs34924243	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC12	5,367 Icelandic ancestry individuals	NA	20p13		rs34924243-T	0.07656	1E-8		0.199664	[0.13-0.27] unit increase	Illumina [7506463] (imputed)	N
613	chr20	3683334	3683335	rs540691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p13		rs540691-?	NR	8E-9				NR [~ 8900000] (imputed)	N
613	chr20	3684021	3684022	rs611847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20p13	NR	rs611847-G	0.635502	4E-13		0.014579	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
613	chr20	3686435	3686436	rs6037651	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIGLEC1	rs6037651-T	0.582	2E-27	(Glutamate receptor ionotropic, delta-2, GRID2.12758.47.3)	0.27	[0.23-0.31] unit increase	Affymetrix [10572788] (imputed)	N
613	chr20	3686435	3686436	rs6037651	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	20p13	SIGLEC1	rs6037651-C	0.3647	3E-15		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
613	chr20	3687140	3687141	rs150358287	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS3BP	5,365 Icelandic ancestry individuals	NA	20p13		rs150358287-A	0.0114	3E-14		0.680828	[0.51-0.86] unit increase	Illumina [7506463] (imputed)	N
613	chr20	3687140	3687141	rs150358287	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COLEC12	5,367 Icelandic ancestry individuals	NA	20p13		rs150358287-A	0.0114	2E-49		1.27825	[1.11-1.45] unit increase	Illumina [7506463] (imputed)	N
613	chr20	3687140	3687141	rs150358287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p13	NR	rs150358287-A	NR	5E-27		0.1238	[0.1-0.15] unit increase	Affymetrix [9000000] (imputed)	N
613	chr20	3689419	3689420	rs6139182	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCDHA4	5,368 Icelandic ancestry individuals	NA	20p13		rs6139182-T	0.3887	2E-16		0.16084	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
613	chr20	3689419	3689420	rs6139182	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRID2	5,365 Icelandic ancestry individuals	NA	20p13		rs6139182-T	0.3887	4E-39		0.252586	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
613	chr20	3689419	3689420	rs6139182	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAST	5,365 Icelandic ancestry individuals	NA	20p13		rs6139182-T	0.3887	2E-13		0.141617	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
613	chr20	3692344	3692345	rs150622725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20p13		rs150622725-C	NR	8E-30		0.116	[0.096-0.136] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
613	chr20	3692344	3692345	rs150622725	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20p13	SIGLEC1	rs150622725-T	0.988515	1E-41		0.0317669	[0.027-0.037] unit decrease	Affymetrix [13995440] (imputed)	N
613	chr20	3692344	3692345	rs150622725	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p13	SIGLEC1	rs150622725-C	0.01	3E-16	(Collectin-12, COLEC12.5457.5.2)	1.05	[0.8-1.3] unit increase	Affymetrix [10572788] (imputed)	N
613	chr20	3694240	3694241	rs17724516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p13	NR	rs17724516-G	NR	9E-14		0.0373	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
613	chr20	3705131	3705132	rs28887921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20p13		rs28887921-G	NR	7E-12		0.0309	[0.022-0.04] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
613	chr20	3705131	3705132	rs28887921	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20p13	NR	rs28887921-G	NR	1E-11		0.0306	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
613	chr20	3707416	3707417	rs6107336	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20p13	HSPA12B	rs6107336-C	0.988514	1E-41		0.0319568	[0.027-0.037] unit decrease	Affymetrix [13995440] (imputed)	N
613	chr20	3731138	3731139	rs58505239	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	20p13	HSPA12B	rs58505239-?	NR	7E-6		2.05		Illumina [6778521] (imputed)	N
613	chr20	3731138	3731139	rs58505239	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	20p13		rs58505239-?	NR	9E-6		1.75	[1.34-2.29]	Illumina [6778521] (imputed)	N
613	chr20	3736575	3736576	rs117491827	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	20p13		rs117491827-T	0.99	6E-9				NR [NR] (imputed)	N
613	chr20	3737494	3737495	rs658495	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	20p13	C20orf27	rs658495-?		7E-6	(disease-free survival)	2.53	[1.69-3.78]	Illumina [729737]	N
613	chr20	3742065	3742066	rs6116019	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	20p13		rs6116019-T	0.901	4E-17		0.16	[-0.19--0.12] % decrease	Affymetrix [NR] (imputed)	N
613	chr20	3742065	3742066	rs6116019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20p13	C20orf27	rs6116019-C	0.0998	3E-12		0.04154223	[0.03-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
613	chr20	3747758	3747759	rs75077214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p13		rs75077214-G	NR	5E-21		0.0336	[0.027-0.041] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	C20orf27	rs75077214-G	0.102556	6E-10		0.023137081	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20p13	C20orf27	rs75077214-G	0.102502	8E-9		0.021272972	[0.014-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20p13	C20orf27	rs75077214-G	0.102584	7E-39		0.050061103	[0.043-0.058] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20p13	C20orf27	rs75077214-G	0.102573	8E-16		0.031312365	[0.024-0.039] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p13	C20orf27	rs75077214-G	0.102528	6E-38		0.0391053	[0.032-0.046] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3747758	3747759	rs75077214	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20p13	NR	rs75077214-G	0.102921	2E-10		0.020654	[0.014-0.027] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
613	chr20	3749885	3749886	rs683808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p13		rs683808-?	NR	5E-10				NR [~ 8900000] (imputed)	N
613	chr20	3750365	3750366	rs3761215	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20p13	C20orf27	rs3761215-C	0.620085	1E-10		0.014750798	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr20	3751216	3751217	rs6116031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20p13	NR	rs6116031-G	0.619833	8E-11		0.013851	[0.0097-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
613	chr20	3756596	3756597	rs13043330	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	20p13	HSPA12B	rs13043330-C	0.63	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
613	chr20	3756736	3756737	rs146594485	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p13	C20orf27, SPEF1, CDC25B	rs146594485-G	0.0032	6E-7	(EA)	0.6229	[0.38-0.86] unit increase	Illumina [~ 9000000] (imputed)	N
613	chr20	3756736	3756737	rs146594485	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p13	C20orf27, SPEF1	rs146594485-G	0.0032	7E-7		0.6195	[0.38-0.86] unit increase	Illumina [~ 9000000] (imputed)	N
613	chr20	3757519	3757520	rs8114815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20p13	SPEF1	rs8114815-C	0.266714	8E-13		0.018049307	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
613	chr20	3757519	3757520	rs8114815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p13	SPEF1	rs8114815-C	0.266699	5E-13		0.01818125	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3760547	3760548	rs6116037	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	20p13	SPEF1	rs6116037-?		6E-6	(corrected for APOE4 status)	0.13	[NR] unit increase	Illumina [5137218] (imputed)	N
613	chr20	3776174	3776175	rs3761218	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	20p13	NR	rs3761218-?	NR	1E-6	(dominant)			Affymetrix [NR]	N
613	chr20	3776174	3776175	rs3761218	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	20p13	NR	rs3761218-C	0.64	7E-6		1.03	[1.15-1.23]	Affymetrix [469557]	N
613	chr20	3777945	3777946	rs4815605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20p13		rs4815605-?	NR	6E-9				NR [~ 8900000] (imputed)	N
613	chr20	3778041	3778042	rs4815606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20p13	CDC25B	rs4815606-A	0.556882	6E-15		0.018369276	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3778041	3778042	rs4815606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p13	CDC25B	rs4815606-A	0.556711	1E-22		0.021805905	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3778041	3778042	rs4815606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs4815606-A	0.589627	2E-35				Affymetrix, Illumina [24246363] (imputed)	N
613	chr20	3778041	3778042	rs4815606	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20p13	NR	rs4815606-A	0.564117	2E-36		0.023518	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
613	chr20	3778041	3778042	rs4815606	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p13		rs4815606-?	NR	1E-24				NR [~ 8900000] (imputed)	N
613	chr20	3780864	3780864	rs3833321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20p13	CDC25B	rs3833321-TGGACTGGAGACCTGGTGCTAG	0.372878	5E-16		0.019613197	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
613	chr20	3780864	3780864	rs3833321	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p13	CDC25B	rs3833321-TGGACTGGAGACCTGGTGCTAG	0.372856	7E-18		0.0140874	[0.0098-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
614	chr20	3821162	3821163	rs187535555	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	20p13	Intergenic	rs187535555-C	0.995	3E-6	(AA)	1.226	NR unit increase	Illumina [NR] (imputed)	N
614	chr20	3827308	3827309	rs4815617	20159242	Li X	2010-02-01	J Allergy Clin Immunol	Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions.	Asthma	607 European ancestry cases, 3,294 European ancestry controls	NA	20p13	KIAA1271	rs4815617-?	NR	8E-6				Illumina [292443]	N
614	chr20	3832340	3832341	rs6052122	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	MAVS	rs6052122-A	0.41778	2E-14		0.018160457	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr20	3847141	3847142	rs3746661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	MAVS	rs3746661-C	0.044923	8E-10		0.03366354	[0.023-0.044] unit increase	Affymetrix [93095623] (imputed)	N
614	chr20	3849178	3849179	rs8126207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p13	MAVS	rs8126207-A	0.473208	5E-16		0.018475277	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
614	chr20	3906077	3906078	rs241597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20p13		rs241597-G	NR	4E-11		0.0183	[0.013-0.024] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
614	chr20	3906077	3906078	rs241597	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	20p13	PANK2	rs241597-G	0.13	2E-8		5.64	z-score increase	Affymetrix [4314223] (imputed)	N
615	chr20	3958615	3958616	rs6139258	28062682	Carr DF	2017-01-05	J Antimicrob Chemother	Genome-wide association study of nevirapine hypersensitivity in a sub-Saharan African HIV-infected population.	Nevirapine-induced hypersensitivity in HIV (drug-induced liver injury)	21 Sub-saharan African ancestry cases, 182 Sub-saharan African ancestry controls	16 Sub-Saharan African ancestry cases, 27 African ancestry cases, 60 Sub-Saharan African ancestry controls, 8 African ancestry controls	20p13	RNF24	rs6139258-C	0.02	6E-7		13.62	[4.90-37.84]	Illumina [14218511] (imputed)	N
615	chr20	3977324	3977325	rs73086581	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to antidepressants in depression	7,795 European ancestry responder cases, 1,311 European ancestry non-responder cases	NA	20p13	RNF24	rs73086581-?		2E-6		1.299	[1.169-1.444]	Illumina [~ 12000000] (imputed)	N
615	chr20	3982657	3982658	rs113788813	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	20p13	NR	rs113788813-?	NR	6E-6	(EA)	3.08	[1.96-4.83]	Illumina [6090031] (imputed)	N
615	chr20	4031652	4031653	rs16989138	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	20p13	RNF24, SMOX	rs16989138-G	0.43	7E-16		0.53	[0.39-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
615	chr20	4031865	4031866	rs6084574	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20p13	RNF24	rs6084574-C	0.487818	4E-8	(-96 ms)	0.0331555	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
615	chr20	4031865	4031866	rs6084574	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20p13	RNF24	rs6084574-C	0.487818	2E-8	(-94 ms)	0.0337636	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
615	chr20	4031865	4031866	rs6084574	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	20p13	RNF24, SMOX	rs6084574-C	0.4992	2E-15		0.5325	[0.4-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
615	chr20	4043500	4043501	rs1415405	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p13	SMOX	rs1415405-?	NR	1E-6	(carnosine)	0.80990124	[0.48-1.14] unit increase	Affymetrix [at least 2500000] (imputed)	N
615	chr20	4054633	4054634	rs13037046	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	20p13	NR	rs13037046-T		6E-6		0.0929	[0.053-0.133] SD units increase	NR [10700000] (imputed)	N
615	chr20	4059156	4059157	rs2326420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p13		rs2326420-?	NR	5E-10				NR [~ 8900000] (imputed)	N
616	chr20	4090801	4090802	rs7264113	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p13	RNF24, SMOX	rs7264113-?	NR	1E-16		0.038412314	[0.029-0.048] unit increase	Illumina [27896057] (imputed)	N
616	chr20	4096103	4096104	rs8121417	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p13		rs8121417-G	0.109275	7E-17		0.0270333	[0.021-0.033] unit increase	Illumina [13479295] (imputed)	N
616	chr20	4096614	4096614	rs57260307	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p13	SMOX	rs57260307-TG	NR	1E-9		0.0183043	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
616	chr20	4096740	4096741	rs57674902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p13	SMOX	rs57674902-T	NR	3E-8		0.0178773	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
616	chr20	4098566	4098567	rs7273787	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20p13	SMOX	rs7273787-A	0.651	3E-12		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
616	chr20	4099557	4099558	rs58842569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p13	SMOX	rs58842569-G	NR	5E-10		0.0201996	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
616	chr20	4099557	4099558	rs58842569	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p13	SMOX	rs58842569-G	NR	4E-9		0.0175281	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
616	chr20	4099557	4099558	rs58842569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p13	NR	rs58842569-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
616	chr20	4101289	4101290	rs1764975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p13		rs1764975-?	NR	1E-9				NR [~ 8900000] (imputed)	N
616	chr20	4101289	4101290	rs1764975	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	20p13	SMOX	rs1764975-T	0.2046	1E-13		0.2819	[0.21-0.36] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
616	chr20	4101799	4101800	rs1741344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p13		rs1741344-T	NR	1E-49		0.0214	[0.019-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
616	chr20	4101799	4101800	rs1741344	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20p13		rs1741344-T	0.6388	4E-14		0.16731152	[0.12-0.21] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
616	chr20	4101799	4101800	rs1741344	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20p13		rs1741344-T	0.6391	8E-12		0.09514031	[0.067-0.123] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
616	chr20	4101799	4101800	rs1741344	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p13	SMOX	rs1741344-T	0.6345	5E-12		0.0136	[0.0097-0.0175] unit decrease	Affymetrix [18391927] (imputed)	N
616	chr20	4101799	4101800	rs1741344	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20p13	NR	rs1741344-T	0.6343460000000001	3E-9		0.00709277	[0.0046-0.0096] unit increase	Affymetrix [16585854] (imputed)	N
616	chr20	4101799	4101800	rs1741344	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20p13	NR	rs1741344-T	0.6343460000000001	4E-7		0.00693331	[0.004-0.0098] unit increase	Affymetrix [16585866] (imputed)	N
616	chr20	4101799	4101800	rs1741344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p13		rs1741344-?	NR	3E-52				NR [~ 8900000] (imputed)	N
616	chr20	4101799	4101800	rs1741344	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20p13	SMOX	rs1741344-T	0.63	3E-9		0.023	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
616	chr20	4102953	4102954	rs1741288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p13	NR	rs1741288-A	0.634575	2E-11		0.00528931	[0.0036-0.007] unit increase	Affymetrix [16582909] (imputed)	N
616	chr20	4102953	4102954	rs1741288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20p13	NR	rs1741288-A	0.634575	6E-8		0.00472738	[0.0028-0.0066] unit increase	Affymetrix [16582965] (imputed)	N
616	chr20	4125138	4125139	rs6084646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20p13	SMOX	rs6084646-T	0.3847	3E-13		0.02725132	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4125856	4125857	rs1630688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	SMOX	rs1630688-T	0.425026	1E-78		0.045512356	[0.041-0.05] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4125856	4125857	rs1630688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs1630688-T	0.425014	9E-65		0.04219724	[0.037-0.047] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4126318	4126319	rs6515865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	SMOX	rs6515865-C	0.383837	1E-34		0.032842804	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4126318	4126319	rs6515865	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20p13	SMOX	rs6515865-C	0.3847	1E-12		0.02659527	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4128610	4128611	rs148311724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	SMOX	rs148311724-A	0.018109	1E-10		0.05578141	[0.039-0.073] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4130589	4130590	rs73893380	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SMOX	rs73893380-G	0.016196	2E-9		0.05398829	[0.036-0.072] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4131943	4131944	rs1741294	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness slope	34,419 European ancestry men	NA	20p13		rs1741294-C	0.96	6E-9		0.016	[0.01-0.022] unit increase	Affymetrix [8918919] (imputed)	N
616	chr20	4132363	4132364	rs13043612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20p13	SMOX	rs13043612-G	0.3348	2E-62		0.06383781	[0.056-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4132363	4132364	rs13043612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20p13	SMOX	rs13043612-G	0.3348	2E-57		0.06119631	[0.054-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4135848	4135849	rs1765003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20p13	SMOX	rs1765003-A	0.136	1E-108		0.11651	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4135848	4135849	rs1765003	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20p13	SMOX	rs1765003-A	0.136	1E-103		0.113853	[0.1-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4136670	4136671	rs6076623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20p13		rs6076623-T	NR	2E-9		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
616	chr20	4136856	4136857	rs1765006	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs1765006-A	0.454809	7E-85		0.04714479	[0.042-0.052] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4136901	4136902	rs1628323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SMOX	rs1628323-T	0.455228	6E-88		0.048233744	[0.043-0.053] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4138628	4138629	rs13038292	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20p13	SMOX	rs13038292-G	0.0517	8E-9		0.04861206	[0.032-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4142838	4142839	rs78839561	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20p13	SMOX	rs78839561-A	0.403289	1E-9		0.013954839	[0.0095-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4142838	4142839	rs78839561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20p13	NR	rs78839561-A	0.398023	2E-11		0.012929	[0.0092-0.0167] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
616	chr20	4144576	4144577	rs1741309	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	20p13	SMOX	rs1741309-A	0.3847	9E-7	(Primary)	0.3232	[0.19-0.45] unit increase	Affymetrix, Illumina [NR] (imputed)	N
616	chr20	4147861	4147862	rs1765013	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	20p13	SMOX	rs1765013-G	0.08	2E-6		9.47	NR unit decrease	Illumina [NR] (imputed)	N
616	chr20	4149654	4149655	rs2013603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs2013603-C	0.618452	2E-13		0.022369023	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4153617	4153618	rs10211774	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20p13	SMOX	rs10211774-A	0.1364	1E-22		0.05180297	[0.041-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4155192	4155193	rs1741314	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20p13	SMOX	rs1741314-C	0.5557	3E-46		0.05170691	[0.045-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4155947	4155948	rs1741315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	20p13		rs1741315-A	NR	1E-11		0.0136	[0.0097-0.0175] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
616	chr20	4157071	4157072	rs6084653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20p13		rs6084653-G	NR	3E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
616	chr20	4157071	4157072	rs6084653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20p13		rs6084653-G	NR	1E-20		0.0227	[0.018-0.027] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388275	3E-1157		0.18468663	[0.18-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388272	3E-1150		0.18392499	[0.18-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388206	3E-18		0.019912891	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388325	5E-25		0.023931483	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388237	1E-15		0.0173715	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388186	2E-12		0.0162955	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388228	7E-26		0.02396397	[0.02-0.028] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388286	3E-273		0.1400432	[0.13-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.38832	3E-1254		0.19145766	[0.19-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs6084653-G	0.388322	2E-1021		0.19994685	[0.19-0.21] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6084653-C	0.629772	1E-21				Affymetrix, Illumina [22063850] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20p13	NR	rs6084653-C	0.616743	8E-24		0.019683	[0.016-0.024] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6084653-G	0.373064	5E-18				Affymetrix, Illumina [21126107] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	20p13	NR	rs6084653-G	0.386841	7E-21		0.019325	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs6084653-G	0.373539	8E-30				Affymetrix, Illumina [20825802] (imputed)	N
616	chr20	4157071	4157072	rs6084653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20p13	NR	rs6084653-G	0.387026	6E-33		0.023741	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
616	chr20	4157071	4157072	rs6084653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20p13		rs6084653-?	NR	3E-23				NR [~ 8900000] (imputed)	N
616	chr20	4157071	4157072	rs6084653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p13		rs6084653-?	NR	2E-33				NR [~ 8900000] (imputed)	N
616	chr20	4157599	4157600	rs1741318	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p13	NR	rs1741318-A	0.394168	7E-9		0.0183938	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
616	chr20	4158802	4158803	rs6076628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20p13	SMOX	rs6076628-G	0.418322	4E-10		0.014188876	[0.0097-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4161499	4161500	rs8118315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p13		rs8118315-?	NR	1E-10				NR [~ 8900000] (imputed)	N
616	chr20	4162410	4162411	rs1124983	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	SMOX	rs1124983-C	0.416662	5E-11		0.029853974	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
616	chr20	4162699	4162700	rs45610331	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	SMOX	rs45610331-A	0.051329	5E-15		0.04033939	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4162977	4162978	rs17220872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	SMOX	rs17220872-T	0.0652970000000001	5E-10		0.030252825	[0.021-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4162977	4162978	rs17220872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs17220872-T	0.065305	9E-12		0.033014413	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4162977	4162978	rs17220872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p13	SMOX	rs17220872-T	0.065289	1E-16		0.03999562	[0.031-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4163301	4163302	rs1051904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20p13	SMOX	rs1051904-G	0.6829	1E-106		0.08433573	[0.077-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
616	chr20	4163683	4163684	rs1337281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p13	SMOX	rs1337281-A	0.0515949999999999	3E-9		0.030544026	[0.02-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4165088	4165089	rs4815663	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p13	SMOX	rs4815663-G	0.679328	3E-19		0.026519239	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4169078	4169079	rs16989303	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	20p13	SMOX	rs16989303-?	0.21	6E-6				Affymetrix [253903]	N
616	chr20	4172771	4172772	rs1217362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p13	RP4-779E11.3	rs1217362-G	0.061708	3E-14		0.036058605	[0.027-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
616	chr20	4172771	4172772	rs1217362	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p13	RP4-779E11.3	rs1217362-G	0.0617100000000001	2E-14		0.036246408	[0.027-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
617	chr20	4203225	4203226	rs835875	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p13		rs835875-?	NR	9E-12				NR [~ 8900000] (imputed)	N
617	chr20	4203225	4203226	rs835875	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p13		rs835875-?	NR	4E-10		0.013175	[0.009-0.0173] unit decrease	Affymetrix [20259828] (imputed)	N
617	chr20	4208226	4208227	rs835879	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	20p13	NR	rs835879-?	NR	6E-7		0.0614	[0.037-0.086] unit increase	Illumina [at least 560000] (imputed)	N
617	chr20	4213174	4213175	rs79601367	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	20p13	NR	rs79601367-G	0.962632	1E-6		0.167	[0.1-0.23] unit decrease	NR [9260588] (imputed)	N
617	chr20	4215556	4215557	rs1556832	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	20p13	ADRA1D	rs1556832-?	NR	9E-6	(Afro-Caribbean)	4.33	[2.27-8.27]	Illumina [2485249] (imputed)	N
617	chr20	4225919	4225920	rs12481514	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	20p13	ADRA1D	rs12481514-A	NR	3E-7		4.469	unit increase	Affymetrix [4198245] (imputed)	N
617	chr20	4251662	4251663	rs6107436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20p13		rs6107436-C	NR	4E-8		0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
617	chr20	4260609	4260610	rs6052484	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	20p13	ADRA1D	rs6052484-A	0.26	7E-6		0.03	[0.01-0.05] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
617	chr20	4260609	4260610	rs6052484	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	20p13	ADRA1D	rs6052484-A	0.26	3E-6	(Ajusted for ApoE)	0.03	[0.01-0.05] ln(smell score+1) decrease	Affymetrix, Illumina [2543887] (imputed)	N
617	chr20	4310633	4310634	rs6052512	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p13	NR	rs6052512-T	0.01045	5E-9	(SPTAN1)	0.5312	NR unit increase	Illumina [1671387] (imputed)	N
617	chr20	4310633	4310634	rs6052512	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p13	NR	rs6052512-T	0.01045	4E-31	(COQ9)	0.05188	NR unit increase	Illumina [1671387] (imputed)	N
617	chr20	4310633	4310634	rs6052512	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p13	NR	rs6052512-T	0.01045	3E-9	(NIPSNAP1)	0.3322	NR unit increase	Illumina [1671387] (imputed)	N
617	chr20	4310633	4310634	rs6052512	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p13	NR	rs6052512-T	0.01045	1E-9	(ACSM2B)	1.757	NR unit increase	Illumina [1671387] (imputed)	N
617	chr20	4311533	4311534	rs3859671	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	20p13	NR	rs3859671-?	NR	1E-6		0.0605	[0.036-0.085] unit decrease	Illumina [at least 560000] (imputed)	N
617	chr20	4313036	4313037	rs11699833	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	20p13	intergenic	rs11699833-A	0.251398	9E-6	(omega-3 PUFA)			Illumina [621723]	N
618	chr20	4352103	4352104	rs159788	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	20p13	intergenic	rs159788-G	NR	7E-6	(5 degree of freedom test)	1.012	[0.97-1.05]	NR [1252901] (imputed)	N
618	chr20	4387133	4387134	rs586446	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p13	NR	rs586446-C	0.118307047833935	5E-6	(IGP52)	0.2226	[0.13-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr20	4387133	4387134	rs586446	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p13	NR	rs586446-C	0.118161679262258	2E-6	(IGP12)	0.2296	[0.13-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
618	chr20	4411626	4411627	rs186132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20p13		rs186132-T	NR	1E-8		0.0299	[0.02-0.04] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
618	chr20	4414603	4414604	rs6052563	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	20p13	Intergenic	rs6052563-?	NR	2E-6		1.945	[NR]	Affymetrix [492217] (imputed)	N
618	chr20	4423101	4423102	rs190933	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20p13		rs190933-C	NR	4E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
618	chr20	4426531	4426532	rs36037977	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20p13		rs36037977-?	NR	5E-8				NR [~ 8900000] (imputed)	N
619	chr20	4469882	4469883	rs6133127	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	20p13	NR	rs6133127-T	0.5871	4E-6		0.0423	[0.024-0.06] unit increase	Illumina [up to 1980188] (imputed)	N
619	chr20	4501874	4501875	rs297755	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	20p13	intergenic	rs297755-G	0.17	5E-6		0.291	unit increase	Illumina [~ 6300000] (imputed)	N
619	chr20	4566687	4566688	rs6076699	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p13	PRNP	rs6076699-A	0.973	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
619	chr20	4566687	4566688	rs6076699	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p13	PRNP	rs6076699-A	NR	3E-6	(EA, women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
620	chr20	4611876	4611877	rs6052699	20526338	Johnson AD	2010-06-06	Nat Genet	Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists.	Platelet aggregation	Up to 3,991 European ancestry individuals	Up to 840 African American individuals	20p13	PRNP	rs6052699-A	0.507	2E-6	(epinephrine)			Affymetrix, Illumina [~ 2330000] (imputed)	N
620	chr20	4669533	4669534	rs6116471	31020675	Omae Y	2019-04-24	Transfusion	Integrative genome analysis identified the KANNO blood group antigen as prion protein.	KANNO antigen negativity	4 Japanese ancestry cases, 415 Japanese ancestry controls	NA	20p13	PRNP	rs6116471-T	0.066	3E-8		1060.0	[48-23674]	Affymetrix [642203]	N
620	chr20	4677091	4677092	rs6107516	25918841	Sanchez-Juan P	2015-04-28	PLoS One	A genome wide association study links glutamate receptor pathway to sporadic Creutzfeldt-Jakob disease risk.	Creutzfeldt-Jakob disease (sporadic)	434 European ancestry cases, 1,939 European ancestry controls	1,109 European ancestry cases, 2,264 European ancestry controls	20p13	PRNP	rs6107516-C	0.759	8E-9		1.35	[1.22-1.50]	Affymetrix [279389]	N
620	chr20	4677091	4677092	rs6107516	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	20p13	PRNP	rs6107516-?	NR	3E-18				Affymetrix [287554]	N
620	chr20	4680250	4680251	rs1799990	32949544	Jones E	2020-09-16	Lancet Neurol	Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease (sporadic)	4,110 European ancestry cases, 13,569 European ancestry controls	1,098 European ancestry cases, 498 ,016 European ancestry controls	20p13	PRNP	rs1799990-A	0?341	1E-16		1.15	[1?04-1?28]	Affymetrix, Illumina [6314492] (imputed)	N
620	chr20	4680250	4680251	rs1799990	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	20p13	PRNP	rs1799990-?	NR	7E-7		1.3	[NR]	Illumina [NR] (imputed)	N
620	chr20	4680250	4680251	rs1799990	19081515	Mead S	2008-12-11	Lancet Neurol	Genetic risk factors for variant Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease	117 European ancestry cases, 3,083 European ancestry controls	2 European ancestry vCJD cases, 506 Oceania ancestry sCJD cases, 28 Oceania ancestry iCJD cases, 151 Oceania ancestry Kuru cases, 125 Oceania ancestry Kuru resistant cases, 3,608 European ancestry controls, 562 Oceania ancestry controls	20p13	PRNP	rs1799990-A	NR	2E-21				Affymetrix [288908]	N
620	chr20	4698625	4698626	rs6116492	22137330	Sanchez-Juan P	2011-11-30	Neurobiol Aging	Genome-wide study links MTMR7 gene to variant Creutzfeldt-Jakob risk.	Creutzfeldt-Jakob disease (variant)	93 European ancestry cases, 1,504 European ancestry controls	42 European ancestry cases	20p13	PRNP	rs6116492-?	NR	5E-7				Affymetrix [287554]	N
620	chr20	4705755	4705756	rs2756263	31109976	Suvichapanich S	2019-05-20	Antimicrob Agents Chemother	Genome-Wide Association Study Confirming the Association of NAT2 with Susceptibility to Anti-tuberculosis Drug-Induced Liver Injury in Thai Patients.	Liver injury in anti-tuberculosis drug treatment	79 Thai ancestry cases, 239 Thai ancestry controls	NA	20p13	PRND	rs2756263-G	0.40	7E-6	(dominant)	4.47	[2.19-9.11]	Illumina [545492]	N
620	chr20	4711754	4711755	rs117098605	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20p13	PRNT	rs117098605-T	0.0209681290097178	6E-6	(G_unclassified_F_Prevotellaceae_RNT)	0.850671	[0.48-1.22] unit increase	Illumina [7711310] (imputed)	N
621	chr20	4720315	4720316	rs2422935	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Estimated glomerular filtration rate	12,207 Hispanic/Latino individuals	8,224 African American individuals, 3,549 Hispanic individuals	20p13	PRNT	rs2422935-?	NR	1E-8				Illumina [32241096] (imputed)	N
621	chr20	4742704	4742705	rs6084875	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	20p13	RASSF2	rs6084875-A	0.34	2E-6		1.356	[1.273-1.44]	Illumina [NR]	N
621	chr20	4756690	4756691	rs7272323	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p13	RASSF2	rs7272323-?		9E-11				Affymetrix, Illumina [NR] (imputed)	N
621	chr20	4776082	4776083	rs190148485	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p13	NR	rs190148485-?	NR	2E-11		0.089	[0.064-0.114] unit increase	Illumina [7760689] (imputed)	N
621	chr20	4797675	4797676	rs201524967	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20p13	Intergenic	rs201524967-?		3E-6		1.14	[1.08-1.20]	Illumina [7645193] (imputed)	N
621	chr20	4797675	4797676	rs201524967	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20p13	Intergenic	rs201524967-?		2E-6		3.71	[2.17-6.36]	Illumina [7645193] (imputed)	N
621	chr20	4804780	4804781	rs79099900	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	20p13	RASSF2	rs79099900-?	NR	3E-6		4.692	[NR] z score decrease	Illumina [6737359] (imputed)	N
621	chr20	4826656	4826657	rs6084912	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Type A behavior	3,268 European ancestry individuals	NA	20p13	NR	rs6084912-C	0.8382	2E-7		0.1878	[0.12-0.26] unit increase	Illumina [8348463] (imputed)	N
622	chr20	4942130	4942131	rs6116600	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC23A2	rs6116600-?	NR	3E-8		0.735976	[NR] unit decrease	Affymetrix [NR] (imputed)	N
622	chr20	4942130	4942131	rs6116600	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC23A2	rs6116600-?	NR	2E-13	(male)	2.04846	[NR] unit decrease	Affymetrix [NR] (imputed)	N
622	chr20	4980404	4980405	rs1279682	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20p13		rs1279682-?	NR	3E-11				NR [~ 8900000] (imputed)	N
623	chr20	4982117	4982118	rs113708270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs113708270-G	0.346388	2E-11				Affymetrix, Illumina [22063850] (imputed)	N
623	chr20	4982604	4982605	rs2423082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20p13	SLC23A2	rs2423082-G	0.16294	4E-15		0.023560653	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
623	chr20	4983091	4983092	rs1279683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p13		rs1279683-A	NR	2E-18		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p13	SLC23A2	rs1279683-A	0.34015	1E-17		0.01990528	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20p13	NR	rs1279683-G	0.660875	1E-12		0.014288	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs1279683-A	0.347558	2E-22				Affymetrix, Illumina [24246363] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20p13	NR	rs1279683-A	0.338843	3E-22		0.018792	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p13	NR	rs1279683-A	0.348528	3E-19				Affymetrix, Illumina [20825802] (imputed)	N
623	chr20	4983091	4983092	rs1279683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20p13	NR	rs1279683-A	0.339552	3E-19		0.018381	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
623	chr20	4983091	4983092	rs1279683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p13		rs1279683-?	NR	2E-18				NR [~ 8900000] (imputed)	N
623	chr20	4983091	4983092	rs1279683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p13		rs1279683-?	NR	3E-9				NR [~ 8900000] (imputed)	N
623	chr20	4983091	4983092	rs1279683	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20p13	SLC23A2	rs1279683-A	0.3337	3E-6		0.0353	[0.021-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
623	chr20	4985341	4985342	rs6053030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p13	SLC23A2	rs6053030-T	0.35043	7E-20		0.0204878	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
623	chr20	5037773	5037774	rs261360	19896111	Medland SE	2009-11-04	Am J Hum Genet	Common variants in the trichohyalin gene are associated with straight hair in Europeans.	Hair morphology	4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals	NA	20p13	AL121890.2	rs261360-A	NR	3E-6				Illumina [~ 1000000] (imputed)	N
623	chr20	5059951	5059952	rs11905359	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	20p13	intergenic	rs11905359-A	0.068	2E-16		0.38	[0.29-0.48] unit decrease	Affymetrix [339439]	N
623	chr20	5100337	5100338	rs769487182	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	20p12.3		rs769487182-?	NR	1E-8		0.623544	[0.39-0.85] unit decrease	NR [9800000] (imputed)	N
623	chr20	5109258	5109259	rs13038869	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs13038869-?	NR	2E-21				NR [~ 8900000] (imputed)	N
624	chr20	5112713	5112714	rs73074166	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.3		rs73074166-A	NR	6E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
624	chr20	5226411	5226413	rs142185689	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	20p12.3	NR	rs142185689-?	NR	8E-12		6.836	NR z score increase	Illumina [at least 830937] (imputed)	N
625	chr20	5294761	5294762	rs74315418	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	20p12.3	NR	rs74315418-?	NR	2E-6		0.456	[0.27-0.64] unit decrease	Illumina [at least 560000] (imputed)	N
625	chr20	5310272	5310273	rs6107615	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20p12.3	PROKR2	rs6107615-C	0.421712	5E-6		0.022795	[0.013-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
626	chr20	5376622	5376623	rs148397504	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	20p12.3	intergenic	rs148397504-A	8.18675E-4	3E-9		18.537754	[12.4-24.67] beats per minute increase	Illumina [24111857] (imputed)	N
626	chr20	5397243	5397244	rs1884752	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	20p12.3	LINC00658	rs1884752-G	0.4714	3E-6				Illumina [4404269] (imputed)	N
626	chr20	5467149	5467150	rs71336998	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	20p12.3	LINC00654	rs71336998-G	0.018	1E-7		0.1266	NR unit increase	NR [NR] (imputed)	N
626	chr20	5478312	5478313	rs73893999	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20p12.3	NR	rs73893999-G	NR	8E-10		0.0491	[0.033-0.065] unit increase	Affymetrix [9000000] (imputed)	N
627	chr20	5528517	5528518	rs3747910	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Low density lipoprotein cholesterol levels	17,222 African American individuals, 22,406 Hispanics ancestry individuals, 2,316 East Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals, 22,331 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	20p12.3		rs3747910-?	NR	5E-13		7.2	z-score decrease decrease	Affymetrix, Illumina [NR] (imputed)	N
627	chr20	5544984	5544985	rs199986018	32226016	Hu Y	2020-03-30	PLoS Genet	Minority-centric meta-analyses of blood lipid levels identify novel loci in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Total cholesterol levels	17,701 African American individuals, 22,954 Hispanics ancestry individuals, 2,387 East Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals, 22,912 European ancestry individuals	up to 71,987 African American individuals, up to 34,899 Hispanics ancestry individuals, up to 315,133 European ancestry individuals, up to 9,593 Asian ancestry individuals, up to 94,674 European ancestry, East Asian ancestry, African American, South Asian ancestry, Hispanic individuals	20p12.3		rs199986018-?	NR	2E-10		6.4	z-score decrease decrease	Affymetrix, Illumina [NR] (imputed)	N
627	chr20	5547383	5547384	rs73078112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	20p12.3		rs73078112-C	0.97286	2E-8		0.0711852	[0.046-0.096] unit decrease	NR [11722792] (imputed)	N
627	chr20	5547383	5547384	rs73078112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	20p12.3		rs73078112-C	0.97286	2E-8		0.0719732	[0.047-0.097] unit decrease	NR [11722792] (imputed)	N
627	chr20	5547383	5547384	rs73078112	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20p12.3		rs73078112-C	0.97286	2E-8		0.0716723	[0.047-0.097] unit decrease	NR [11722792] (imputed)	N
627	chr20	5547383	5547384	rs73078112	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20p12.3	NR	rs73078112-T	0.02722	1E-11		0.004687	[0.0033-0.0061] unit increase	Affymetrix [NR] (imputed)	N
627	chr20	5580788	5580789	rs73075609	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	20p12.3		rs73075609-T	NR	2E-13		0.056	[0.041-0.071] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
627	chr20	5580788	5580789	rs73075609	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		20p12.3	GPCPD1	rs73075609-C	NR	7E-10		0.02983	[0.017-0.043] nmol/l decrease	NR [19000000] (imputed)	N
627	chr20	5580788	5580789	rs73075609	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p12.3	NR	rs73075609-T	NR	2E-10		0.0477	[0.033-0.062] unit increase	Affymetrix [9000000] (imputed)	N
627	chr20	5580788	5580789	rs73075609	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20p12.3	NR	rs73075609-C	0.973118	2E-16		0.0490853	[0.037-0.061] unit decrease	Affymetrix [15000001]	N
627	chr20	5580788	5580789	rs73075609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20p12.3	GPCPD1	rs73075609-C	0.973209	2E-8		0.036728	[0.024-0.049] unit decrease	Affymetrix [NR] (imputed)	N
627	chr20	5580788	5580789	rs73075609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20p12.3	GPCPD1	rs73075609-C	0.973202	1E-13		0.0481624	[0.035-0.061] unit decrease	Affymetrix [NR] (imputed)	N
627	chr20	5580788	5580789	rs73075609	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20p12.3	GPCPD1	rs73075609-?	NR	1E-11		0.0537	[0.04-0.068] unit increase	Affymetrix [5701386] (imputed)	N
627	chr20	5588448	5588449	rs238295	22343285	Bakken TE	2012-02-16	Proc Natl Acad Sci U S A	Association of common genetic variants in GPCPD1 with scaling of visual cortical surface area in humans.	Occipital cortical area (total cortical area interaction)	421 European ancestry individuals	760 European ancestry individuals	20p12.3	GPCPD1	rs238295-?	NR	6E-9				Affymetrix [597198]	N
627	chr20	5615603	5615604	rs117867911	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20p12.3	NR	rs117867911-T	NR	2E-10		0.0422	[0.029-0.055] unit increase	Affymetrix [9000000] (imputed)	N
627	chr20	5615603	5615604	rs117867911	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20p12.3	NR	rs117867911-T	NR	1E-12		0.0471	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
627	chr20	5626586	5626587	rs116139299	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs116139299-C	0.0122	4E-9	(GC)	0.1997	NR unit increase	Illumina [1671387] (imputed)	N
628	chr20	5636944	5636945	rs2423124	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	20p12.3	GPCPD1	rs2423124-T		4E-7	(DLCO)	0.16	[0.099-0.221] unit decrease	Affymetrix, Illumina [NR]	N
628	chr20	5651215	5651216	rs805757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs805757-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
628	chr20	5664111	5664112	rs805737	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	20p12.3	NR	rs805737-C	0.859	2E-10		0.0164	[0.011-0.021] unit decrease	NR [~ 27400000] (imputed)	N
628	chr20	5664998	5664999	rs6053604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	C20orf196	rs6053604-C	NR	5E-8		0.0209603	[0.013-0.028] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5665403	5665404	rs709029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs709029-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
628	chr20	5666890	5666891	rs805768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	C20orf196	rs805768-T	NR	1E-9		0.0223673	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
628	chr20	5666890	5666891	rs805768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805768-T	NR	4E-8		0.0182436	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5666890	5666891	rs805768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	C20orf196	rs805768-T	NR	9E-10		0.0224994	[0.015-0.03] unit increase	Affymetrix [127266] (imputed)	N
628	chr20	5666890	5666891	rs805768	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20p12.3	NR	rs805768-T	0.2391	2E-14		0.0179	[0.013-0.022] unit increase	NR [~ 27400000] (imputed)	N
628	chr20	5666890	5666891	rs805768	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20p12.3	NA	rs805768-T	0.2391	4E-9		0.0137	[0.0092-0.0182] unit increase	NR [~ 27400000] (imputed)	N
628	chr20	5667458	5667459	rs805769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20p12.3	C20orf196	rs805769-C	NR	4E-8		0.0179413	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
628	chr20	5667458	5667459	rs805769	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs805769-?	NR	6E-12		0.0129023	[0.0087-0.0171] unit decrease	Affymetrix [20259828] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	5E-20		0.0265258	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	C20orf196	rs805770-T	NR	2E-12		0.0226444	[0.016-0.029] unit increase	Affymetrix [323858] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	4E-20		0.0266429	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	C20orf196	rs805770-T	NR	1E-12		0.0227211	[0.016-0.029] unit increase	Affymetrix [127266] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	5E-10		0.0182122	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	6E-12		0.0206946	[0.015-0.027] unit decrease	Affymetrix [321788] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	5E-9		0.0169305	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
628	chr20	5668713	5668714	rs805770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs805770-T	NR	6E-10		0.0181167	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
628	chr20	5668713	5668714	rs805770	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	C20orf196	rs805770-C	0.60952	4E-9		0.0112172	[0.0075-0.0149] unit decrease	NR [13737936] (imputed)	N
628	chr20	5668713	5668714	rs805770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20p12.3		rs805770-?	NR	6E-33				NR [~ 8900000] (imputed)	N
628	chr20	5668713	5668714	rs805770	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs805770-?	NR	1E-8				NR [~ 8900000] (imputed)	N
628	chr20	5669758	5669759	rs6038248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	C20orf196	rs6038248-T	NR	2E-12		0.0230622	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5669758	5669759	rs6038248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	C20orf196	rs6038248-T	NR	1E-12		0.0231588	[0.017-0.03] unit increase	Affymetrix [319769] (imputed)	N
628	chr20	5701725	5701726	rs709032	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	KIAA1434	rs709032-?	NR	2E-6	(PC 32:1)	0.2286343	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
628	chr20	5707623	5707624	rs111281919	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	20p12.3	NR	rs111281919-?	NR	4E-6		0.02354	[0.014-0.034] unit decrease	Affymetrix [9658292] (imputed)	N
628	chr20	5725671	5725672	rs62203867	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	20p12.3	GPCPD1, CHGB	rs62203867-C	0.76	1E-6	(AA)	2.173913	[1.59-2.94]	Affymetrix [up to 9627525] (imputed)	N
628	chr20	5727599	5727600	rs6085262	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20p12.3	NR	rs6085262-T	0.161	7E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
628	chr20	5761023	5761024	rs6133262	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	CHGB	rs6133262-?	NR	6E-6	(PC 38:3)	0.16756737	[0.095-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
629	chr20	5772275	5772276	rs73077323	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20p12.3	NR	rs73077323-A	0.0999	5E-6	(EA)	0.0563	[0.032-0.08] unit decrease	Illumina [~ 11800000] (imputed)	N
629	chr20	5810830	5810831	rs237076	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	20p12.3		rs237076-?	NR	6E-7				Illumina [1365315]	N
629	chr20	5828374	5828375	rs1287071	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	20p12.3	C20orf196	rs1287071-A	0.7111	6E-6		11.3492	[6.77-15.93] unit decrease	Illumina [~ 6000000] (imputed)	N
629	chr20	5840538	5840539	rs4815868	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p12.3	C20orf196	rs4815868-A	0.19	8E-6	(2-choice RT)	0.16	[0.08-0.24] unit increase	Illumina [~ 610000]	N
630	chr20	5906059	5906060	rs73598773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs73598773-C	0.01045	3E-10	(MPO)	0.3115	NR unit decrease	Illumina [1671387] (imputed)	N
630	chr20	5917427	5917428	rs236164	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	CHGB	rs236164-?	NR	8E-6	(indole-3-propionate)	0.22749506	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
630	chr20	5920092	5920093	rs187860960	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	20p12.3	TRMT6	rs187860960-T	NR	7E-7		0.25	[0.15-0.35] unit decrease	Affymetrix [9868623] (imputed)	N
630	chr20	5935384	5935385	rs236114	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	20p12.3	MCM8	rs236114-A	0.21	1E-10		0.5	[0.34-0.65] years increase	Illumina [315418]	N
630	chr20	5941998	5941999	rs451417	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	20p12.3	MCM8	rs451417-A	0.12	5E-9		0.2	[0.14-0.26] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
630	chr20	5943692	5943693	rs454422	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	20p12.3	MCM8	rs454422-?	0.26	1E-6				Illumina [1212217]	N
630	chr20	5948226	5948227	rs16991615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	20p12.3		rs16991615-A	NR	4E-8		0.1451	[0.093-0.197] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
630	chr20	5948226	5948227	rs16991615	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	37,461 European ancestry female cases, 126,524 European ancestry female controls	NA	20p12.3	MCM8	rs16991615-A	0.065	5E-8		1.139	[1.087-1.193]	Affymetrix [7871717] (imputed)	N
630	chr20	5948226	5948227	rs16991615	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	20p12.3	MCM8, TRMT6	rs16991615-A	0.07	9E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [8662096] (imputed)	N
630	chr20	5948226	5948227	rs16991615	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Heavy menstrual bleeding	9,813 European ancestry cases, 210,946 European ancestry controls	NA	20p12.3	NR	rs16991615-A	0.07	3E-8		1.21	[1.13-1.29]	Affymetrix [10308721] (imputed)	N
630	chr20	5948226	5948227	rs16991615	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	20p12.3	NR	rs16991615-A	0.068	4E-10		0.26	[0.18-0.34] unit increase	Illumina [~ 8400000] (imputed)	N
630	chr20	5948226	5948227	rs16991615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	20p12.3		rs16991615-?	NR	1E-143				NR [~ 8900000] (imputed)	N
630	chr20	5948226	5948227	rs16991615	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	20p12.3	MCM8	rs16991615-A	0.08139	2E-10		1.16	[1.11-1.21]	Affymetrix, Illumina [43421991] (imputed)	N
630	chr20	5948226	5948227	rs16991615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20p12.3	MCM8	rs16991615-A	0.06	2E-9	(EA)	1.1	[1.06-1.14] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
630	chr20	5948226	5948227	rs16991615	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	20p12.3	MCM8	rs16991615-G	0.93	2E-89		0.88	[0.8-0.96] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
630	chr20	5948226	5948227	rs16991615	23307926	Perry JR	2013-01-09	Hum Mol Genet	A genome-wide association study of early menopause and the combined impact of identified variants.	Menopause (age at onset)	3,493 European ancestry cases, 13,598 European ancestry controls	3,412 European ancestry cases, 4,928 European ancestry controls	20p12.3	NR	rs16991615-A	0.0785	5E-12		0.4608	[0.33-0.59] years decrease	NR [NR]	N
630	chr20	5948226	5948227	rs16991615	22267201	Stolk L	2012-01-22	Nat Genet	Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways.	Menopause (age at onset)	38,968 European ancestry female individuals	Up to 14,435 European ancestry female individuals	20p12.3	MCM8	rs16991615-A	0.069	1E-73		0.948	[0.85-1.05] years increase	Affymetrix, Illumina [2551160] (imputed)	N
630	chr20	5948226	5948227	rs16991615	19448621	He C	2009-05-17	Nat Genet	Genome-wide association studies identify loci associated with age at menarche and age at natural menopause.	Menarche and menopause (age at onset)	17,438 European ancestry female individuals	NA	20p12.3	MCM8, TRMT6	rs16991615-A	0.06	1E-21	(age at natural menopause)	1.07	[0.85-1.29] years increase	Illumina [317759]	N
630	chr20	5949533	5949534	rs4815879	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	20p12.3	MCM8	rs4815879-?	NR	2E-6	(Afro-Caribbean)	14.57	[4.81-44.17]	Illumina [2485249] (imputed)	N
630	chr20	5951450	5951451	rs76498344	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	20p12.3	MCM8	rs76498344-C	0.23	7E-11				Illumina [at least 532488] (imputed)	N
630	chr20	5951450	5951451	rs76498344	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	20p12.3	MCM8	rs76498344-C	0.23	4E-12	(japanese)	0.22	[0.16-0.28] year increase	Illumina [at least 532488] (imputed)	N
630	chr20	5980552	5980553	rs115197409	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	20p12.3		rs115197409-T	NR	3E-6		1.0314	unit increase	Illumina [NR] (imputed)	N
630	chr20	6006040	6006041	rs77351827	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	20p12.3	CRLS1	rs77351827-T	0.1275	9E-9		0.0802	[0.053-0.107] unit increase	NR [7784415] (imputed)	N
631	chr20	6035227	6035228	rs2326679	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	20p12.3	NR	rs2326679-?	NR	2E-6		0.32	[0.19-0.45] years increase	Illumina [315418]	N
631	chr20	6050621	6050622	rs6516091	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	20p12.3	FERMT1	rs6516091-A	0.135	3E-6		1.131	[1.074-1.190]	Affymetrix, Illumina [5363770] (imputed)	N
631	chr20	6082057	6082058	rs16991849	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs16991849-G	0.02265	8E-9	(HINT1)	0.2122	NR unit decrease	Illumina [1671387] (imputed)	N
631	chr20	6082057	6082058	rs16991849	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs16991849-G	0.02265	1E-9	(GALE)	0.1467	NR unit decrease	Illumina [1671387] (imputed)	N
631	chr20	6084194	6084195	rs58961824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20p12.3		rs58961824-T	NR	6E-11		0.0201	[0.014-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
631	chr20	6093888	6093889	rs4256018	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20p12.3	FERMT1	rs4256018-G	0.25	1E-8		1.08	1.05-1.11	Illumina [9725440] (imputed)	N
631	chr20	6093888	6093889	rs4256018	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	20p12.3	FERMT1	rs4256018-?		2E-7				Illumina [9560910] (imputed)	N
632	chr20	6186156	6186157	rs6076960	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	20p12.3	FERMT1	rs6076960-A	0.475	6E-6		1.2722	[NR] unit increase	Illumina [1216189] (imputed)	N
632	chr20	6197059	6197060	rs6139943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6139943-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
632	chr20	6211501	6211502	rs148767741	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	20p12.3	AL109618.1	rs148767741-A	0.002	2E-7		23.41	[7.08-77.38]	Illumina [7959153] (imputed)	N
632	chr20	6227235	6227236	rs6054018	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	20p12.3	CRLS1, LRRN4, FERMT1, CASC20, BMP2	rs6054018-?	NR	2E-10	(African)	0.0139	[0.013-0.015] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
632	chr20	6246059	6246060	rs3905152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	AL109618.1	rs3905152-T	NR	1E-8		0.0221848	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
632	chr20	6251638	6251639	rs3909086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs3909086-?	NR	6E-26				NR [~ 8900000] (imputed)	N
632	chr20	6253743	6253744	rs117977134	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs117977134-G	0.02787	1E-8	(SBDS)	0.03747	NR unit increase	Illumina [1671387] (imputed)	N
632	chr20	6260798	6260799	rs71338529	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20p12.3	NR	rs71338529-A	0.0107	7E-6		0.08420619	[0.047-0.121] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
633	chr20	6315936	6315937	rs6085497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p12.3		rs6085497-?	NR	3E-14				NR [~ 8900000] (imputed)	N
633	chr20	6316525	6316526	rs1571217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20p12.3		rs1571217-T	NR	1E-9		0.0437	[0.03-0.058] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
633	chr20	6316525	6316526	rs1571217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20p12.3		rs1571217-T	NR	5E-9		0.0404	[0.027-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
633	chr20	6316525	6316526	rs1571217	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs1571217-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
633	chr20	6331375	6331376	rs6076983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20p12.3		rs6076983-T	NR	6E-12		0.0382	[0.027-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
633	chr20	6331375	6331376	rs6076983	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20p12.3	RP11-199O14.1	rs6076983-C	0.398614	2E-9		0.037133195	[0.025-0.049] unit decrease	Affymetrix [7288503] (imputed)	N
633	chr20	6364503	6364504	rs2209760	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs2209760-?	NR	5E-71		0.0371487	[0.033-0.041] unit increase	Affymetrix [20259828] (imputed)	N
633	chr20	6365644	6365645	rs6054200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6054200-G	NR	1E-8		0.0164933	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
633	chr20	6365644	6365645	rs6054200	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p12.3	intergenic	rs6054200-A	0.5898	8E-10		0.1644	[0.11-0.22] mmHg increase	Affymetrix [NR] (imputed)	N
633	chr20	6375459	6375460	rs6085533	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20p12.3	LOC149844	rs6085533-A		1E-6		0.04	[0.03-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
633	chr20	6376456	6376457	rs189583	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	BMP2	rs189583-G	0.3298	1E-22		1.1	[1.08-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
633	chr20	6383526	6383527	rs2423151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	20p12.3		rs2423151-A	NR	3E-14		0.0776	[0.058-0.098] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
633	chr20	6383526	6383527	rs2423151	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	CASC20	rs2423151-G	0.348084	6E-79		0.0366603	[0.033-0.04] unit increase	NR [13737936] (imputed)	N
633	chr20	6383526	6383527	rs2423151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs2423151-?	NR	4E-70				NR [~ 8900000] (imputed)	N
633	chr20	6397218	6397219	rs148810922	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	20p12.3	NR	rs148810922-A	0.003	6E-6		9.48	[3.58-25.12]	Illumina [7959153] (imputed)	N
633	chr20	6404280	6404281	rs961253	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20p12.3	NR	rs961253-A	NR	5E-20		1.11	[1.08-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
633	chr20	6404280	6404281	rs961253	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	20p12.3	intergenic	rs961253-A	0.356977	3E-13		0.245259	[0.18-0.31] ms increase	Illumina [162199]	N
633	chr20	6404280	6404281	rs961253	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	20p12.3	intergenic	rs961253-A	0.357323965380124	1E-10		0.3038763	[0.21-0.4] ms increase	Illumina [213295]	N
633	chr20	6404280	6404281	rs961253	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	20p12.3	NR	rs961253-A	0.361	6E-11	(EA)	1.08	[1.06-1.11]	Affymetrix, Illumina [12931465] (imputed)	N
633	chr20	6404280	6404281	rs961253	28960316	Tanskanen T	2017-09-28	Int J Cancer	Genome-wide association study and meta-analysis in Northern European populations replicate multiple colorectal cancer risk loci.	Colorectal cancer	1,701 Finnish ancestry cases, 14,082 Finnish ancestry controls	11,647 European ancestry cases, 12,356 European ancestry controls	20p12.3	CASC20, FGFR3P3	rs961253-A	0.303	7E-6		0.0168	[0.00947-0.0242] unit increase	Illumina [9068015] (imputed)	N
633	chr20	6404280	6404281	rs961253	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	20p12.3	BMP2	rs961253-A	0.37	1E-7		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
633	chr20	6404280	6404281	rs961253	19011631	Houlston RS	2008-11-16	Nat Genet	Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.	Colorectal cancer	1,902 European ancestry cases, 1,929 European ancestry controls	18,284 European ancestry cases, 18,926 European ancestry controls	20p12.3	intergenic	rs961253-A	0.36	2E-10		1.12	[1.08-1.16]	Illumina [up to 548586]	N
633	chr20	6405613	6405614	rs62198536	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs62198536-?	NR	7E-78		0.0394987	[0.035-0.044] unit decrease	Affymetrix [20259828] (imputed)	N
633	chr20	6405613	6405614	rs62198536	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	CASC20	rs62198536-A	0.646406	5E-14	(women)	0.0348217	[0.025-0.044] unit decrease	NR [17166351] (imputed)	N
633	chr20	6405613	6405614	rs62198536	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	CASC20	rs62198536-A	0.645081	6E-28		0.0376829	[0.031-0.045] unit decrease	NR [17166351] (imputed)	N
633	chr20	6405613	6405614	rs62198536	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	CASC20	rs62198536-A	0.643562	7E-18	(men)	0.0452719	[0.035-0.056] unit decrease	NR [17166351] (imputed)	N
633	chr20	6407510	6407511	rs6076996	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6076996-A	NR	1E-8		0.0162852	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
633	chr20	6408919	6408920	rs6085551	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs6085551-T	0.479017	9E-9	(females)	0.02056	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
633	chr20	6408919	6408920	rs6085551	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs6085551-T	0.479017	3E-6		0.01159	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
633	chr20	6408919	6408920	rs6085551	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs6085551-T	0.479017	8E-6	(females)	0.01789	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
633	chr20	6408919	6408920	rs6085551	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs6085551-T	0.479017	7E-12	(males)	0.0108	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
633	chr20	6408919	6408920	rs6085551	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs6085551-T	0.479017	5E-12		0.0148	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
633	chr20	6410853	6410854	rs6038491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6038491-?	NR	2E-33				Affymetrix [~ 8270000] (imputed)	N
633	chr20	6410888	6410906	rs111508058	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20p12.3	CASC20	rs111508058-CAGGGCTTGGCCCTGGAGT	0.5534	7E-8		0.0344	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
633	chr20	6410904	6410905	rs6038492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6038492-A	NR	4E-15		0.0240811	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
633	chr20	6410904	6410905	rs6038492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6038492-A	NR	8E-9		0.0176559	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
633	chr20	6411559	6411560	rs6139982	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 60)	4,680 European ancestry individuals	3,566 European ancestry individuals	20p12.3		rs6139982-A	0.441176471	4E-9				Illumina [7417619] (imputed)	N
633	chr20	6413829	6413830	rs2326783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs2326783-T	NR	1E-13		0.0246587	[0.018-0.031] unit increase	Affymetrix [321114] (imputed)	N
633	chr20	6413940	6413941	rs2225345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs2225345-C	NR	3E-12		0.0199447	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
633	chr20	6415823	6415824	rs6054232	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs6054232-C	NR	1E-9		0.0188111	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
634	chr20	6430695	6430696	rs56083061	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs56083061-A	NR	2E-8		0.0194573	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6442960	6442961	rs6077004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6077004-A	NR	4E-9		0.0188631	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
634	chr20	6442960	6442961	rs6077004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6077004-A	NR	1E-19		0.0292548	[0.023-0.036] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6442960	6442961	rs6077004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs6077004-A	NR	6E-18		0.0302073	[0.023-0.037] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6442960	6442961	rs6077004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs6077004-A	NR	2E-8		0.0194146	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
634	chr20	6442960	6442961	rs6077004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6077004-A	NR	3E-11		0.0215549	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
634	chr20	6448520	6448521	rs6117276	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	20p12.3	CASC20	rs6117276-?		4E-7	(recessive)	0.461	[0.28-0.64] unit increase	Illumina [1492601] (imputed)	N
634	chr20	6452981	6452982	rs6085568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs6085568-?	NR	2E-11				NR [~ 8900000] (imputed)	N
634	chr20	6456281	6456282	rs6077011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6077011-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
634	chr20	6457479	6457480	rs6054293	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6054293-G	NR	2E-9		0.0171737	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
634	chr20	6457838	6457839	rs979547	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs979547-A	NR	8E-15		0.0245387	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
634	chr20	6460289	6460290	rs3929778	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	20p12.3	BMP2	rs3929778-?	NR	6E-9	(EA)	20.69	[13.71-27.67] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
634	chr20	6465632	6465633	rs11699612	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20p12.3	BMP2	rs11699612-C	0.789475	7E-12	(34 ms)	0.04519	[0.032-0.059] unit increase	Affymetrix [10000000] (imputed)	N
634	chr20	6465632	6465633	rs11699612	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20p12.3	BMP2	rs11699612-C	0.789475	1E-11	(36 ms)	0.0448071	[0.031-0.058] unit increase	Affymetrix [10000000] (imputed)	N
634	chr20	6465632	6465633	rs11699612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs11699612-?	NR	9E-18				Affymetrix [~ 8270000] (imputed)	N
634	chr20	6465632	6465633	rs11699612	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	20p12.3	CASC20	rs11699612-T	0.209	9E-6		0.0355	[0.02-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
634	chr20	6466404	6466405	rs4815904	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs4815904-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
634	chr20	6466404	6466405	rs4815904	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs4815904-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
634	chr20	6469595	6469596	rs17721822	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20p12.3	CASC20	rs17721822-G	0.639929	4E-12		0.00171622	[0.0012-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
634	chr20	6469595	6469596	rs17721822	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20p12.3	BMP2	rs17721822-A	0.372	3E-29		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
634	chr20	6470093	6470094	rs2326788	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	20p12.3	CASC20	rs2326788-A	NR	4E-7		0.891723	[0.85-0.94]	Illumina [11610548] (imputed)	N
634	chr20	6470093	6470094	rs2326788	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	20p12.3	CASC20	rs2326788-A	NR	2E-14		0.0567	unit decrease	Illumina [15409056] (imputed)	N
634	chr20	6470093	6470094	rs2326788	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs2326788-A	0.3793	1E-9	(EA)	0.022	[0.015-0.029] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
634	chr20	6470264	6470265	rs928202	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p12.3	NR	rs928202-G	NR	3E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
634	chr20	6470804	6470805	rs6117294	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	CASC20	rs6117294-T	0.604904	7E-16		0.015379	[0.012-0.019] unit increase	NR [13737936] (imputed)	N
634	chr20	6472917	6472918	rs6054308	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs6054308-?	NR	1E-19		0.0200385	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
634	chr20	6473053	6473054	rs6140009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p12.3		rs6140009-T	NR	6E-11		0.0138	[0.0097-0.0179] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
634	chr20	6473053	6473054	rs6140009	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	20p12.3	CASC20	rs6140009-C	0.62	3E-48		0.01	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
634	chr20	6473053	6473054	rs6140009	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	20p12.3	CASC20	rs6140009-C	0.62	2E-14		1.09	NR	Affymetrix, Illumina [8002429] (imputed)	N
634	chr20	6473122	6473123	rs6140010	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	20p12.3	CASC20	rs6140010-A	0.63	9E-43		0.01	[0.0082-0.0118] unit increase	Affymetrix [at least 8002429] (imputed)	N
634	chr20	6473122	6473123	rs6140010	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	20p12.3	CASC20	rs6140010-A	NR	8E-10		1.09	1.06-1.12	Affymetrix [at least 665500] (imputed)	N
634	chr20	6479297	6479298	rs2876035	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs2876035-A	NR	1E-8		0.0176034	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
634	chr20	6479297	6479298	rs2876035	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty (time to prosthesis revision)	1,096 European ancestry cases	NA	20p12.3	NR	rs2876035-A	0.41	2E-6		0.191	[0.11-0.27] unit decrease	Illumina [5418572] (imputed)	N
634	chr20	6486647	6486648	rs6107820	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.3		rs6107820-G	0.42	8E-28		10.93	z score increase	Affymetrix [9061022] (imputed)	N
634	chr20	6486647	6486648	rs6107820	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p12.3		rs6107820-G	0.42	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
634	chr20	6486647	6486648	rs6107820	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p12.3	NR	rs6107820-G	0.4171	7E-12				NR [9056863] (imputed)	N
634	chr20	6488805	6488806	rs1411297	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	CASC20	rs1411297-A	NR	4E-11		0.0196662	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
634	chr20	6495415	6495416	rs1330021	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	CASC20	rs1330021-A	NR	3E-9		0.0177117	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
634	chr20	6495415	6495416	rs1330021	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs1330021-A	NR	3E-19		0.0270058	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6495415	6495416	rs1330021	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	CASC20	rs1330021-A	NR	4E-9		0.0176924	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
634	chr20	6502590	6502591	rs2065201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs2065201-C	NR	7E-9		0.0187447	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
634	chr20	6506274	6506275	rs55678551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	20p12.3		rs55678551-T	NR	2E-8		0.0687	[0.045-0.093] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
634	chr20	6507837	6507838	rs6117319	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p12.3		rs6117319-C	0.42	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
634	chr20	6528626	6528627	rs1819154	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	20p12.3	CASC20, BMP2	rs1819154-C	0.02	3E-10		0.02	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
634	chr20	6540761	6540762	rs6117333	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p12.3	NR	rs6117333-C	0.4272	1E-9				NR [9056863] (imputed)	N
634	chr20	6542633	6542634	rs1407031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs1407031-T	NR	4E-8		0.0160011	[0.01-0.022] unit decrease	Affymetrix [321114] (imputed)	N
634	chr20	6542633	6542634	rs1407031	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	20p12.3	CASC20	rs1407031-T	0.3906	2E-6		0.0572	[0.034-0.081] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
634	chr20	6549783	6549783	rs11480421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs11480421-C	NR	4E-8		0.0170574	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6549952	6549953	rs6085604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	CASC20	rs6085604-A	NR	4E-9		0.0199481	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
634	chr20	6549952	6549953	rs6085604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6085604-A	NR	1E-10		0.0217753	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
634	chr20	6549952	6549953	rs6085604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6085604-A	NR	6E-19		0.0302554	[0.024-0.037] unit increase	Affymetrix [321114] (imputed)	N
634	chr20	6549952	6549953	rs6085604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	CASC20	rs6085604-A	NR	1E-10		0.0219453	[0.015-0.029] unit increase	Affymetrix [321169] (imputed)	N
635	chr20	6563419	6563420	rs1321447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	20p12.3		rs1321447-T	NR	4E-8		0.0887	[0.057-0.12] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
635	chr20	6570520	6570521	rs6054361	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20p12.3	NR	rs6054361-?	NR	3E-7	(female)	0.12557	[0.077-0.174] unit decrease	Affymetrix [7794483] (imputed)	N
635	chr20	6570520	6570521	rs6054361	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20p12.3	NR	rs6054361-?	NR	3E-7		0.11573	[0.072-0.16] unit decrease	Affymetrix [7794483] (imputed)	N
635	chr20	6572013	6572014	rs2145274	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	20p12.3	CASC20, BMP2	rs2145274-A	0.91	7E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
635	chr20	6572013	6572014	rs2145274	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	20p12.3	CASC20, BMP2	rs2145274-A	0.91	5E-13	(EA)	1.11	[1.08-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
635	chr20	6573454	6573455	rs2145275	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.3	NR	rs2145275-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6574933	6574934	rs16992396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs16992396-C	NR	5E-8		0.0265371	[0.017-0.036] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6574933	6574934	rs16992396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	CASC20	rs16992396-C	NR	1E-9		0.0294197	[0.02-0.039] unit increase	Affymetrix [127266] (imputed)	N
635	chr20	6574933	6574934	rs16992396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs16992396-C	NR	8E-10		0.0294921	[0.02-0.039] unit increase	Affymetrix [321114] (imputed)	N
635	chr20	6575060	6575061	rs6054364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs6054364-A	NR	4E-12		0.0221572	[0.016-0.028] unit decrease	Affymetrix [323858] (imputed)	N
635	chr20	6575060	6575061	rs6054364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	CASC20	rs6054364-A	NR	5E-15		0.024927	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
635	chr20	6575060	6575061	rs6054364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs6054364-A	NR	4E-24		0.0319349	[0.026-0.038] unit decrease	Affymetrix [321114] (imputed)	N
635	chr20	6575060	6575061	rs6054364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs6054364-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6575060	6575061	rs6054364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6054364-?	NR	8E-30				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6575469	6575470	rs2326769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20p12.3	CASC20	rs2326769-G	NR	1E-11		0.0214204	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
635	chr20	6575748	6575749	rs1983716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs1983716-T	NR	1E-9		0.0227836	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6575748	6575749	rs1983716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	CASC20	rs1983716-T	NR	4E-12		0.0259288	[0.019-0.033] unit increase	Affymetrix [127266] (imputed)	N
635	chr20	6575748	6575749	rs1983716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs1983716-T	NR	2E-21		0.0351047	[0.028-0.042] unit increase	Affymetrix [321114] (imputed)	N
635	chr20	6575748	6575749	rs1983716	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20p12.3	CASC20	rs1983716-T	NR	3E-9		0.0220385	[0.015-0.029] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6576784	6576785	rs958435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	CASC20	rs958435-G	NR	1E-35		0.0406681	[0.034-0.047] unit increase	Affymetrix [321114] (imputed)	N
635	chr20	6578555	6578556	rs6054374	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	20p12.3	BMP2	rs6054374-T	NR	2E-7		0.007	[0.0050-0.0090] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
635	chr20	6578628	6578629	rs6054375	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	20p12.3	BMP2	rs6054375-T	NR	3E-16	(EA)	0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
635	chr20	6578628	6578629	rs6054375	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	20p12.3	BMP2	rs6054375-T	NR	2E-15		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
635	chr20	6578740	6578741	rs6107845	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	20p12.3	BMP2	rs6107845-A	NR	5E-17	(EA)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
635	chr20	6578740	6578741	rs6107845	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	20p12.3	BMP2	rs6107845-A	NR	3E-17		0.009	[0.007-0.011] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
635	chr20	6580218	6580219	rs4239767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	CASC20	rs4239767-C	NR	8E-20		0.0299945	[0.024-0.036] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6580218	6580219	rs4239767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	CASC20	rs4239767-C	NR	1E-24		0.0337392	[0.027-0.04] unit increase	Affymetrix [127266] (imputed)	N
635	chr20	6580218	6580219	rs4239767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20p12.3	CASC20	rs4239767-C	NR	1E-15		0.0261789	[0.02-0.033] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6582161	6582162	rs6140038	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	20p12.3	AL121911.1	rs6140038-?	0.011	1E-6	(EA, Inherited)	5.24	[2.50-10.99]	Illumina [2421290] (imputed)	N
635	chr20	6584161	6584162	rs6117356	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	20p12.3	BMP2	rs6117356-G	0.412	2E-16		0.011	[0.009-0.013] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
635	chr20	6584603	6584604	rs6054383	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	20p12.3	BMP2	rs6054383-T	0.42	4E-15		0.018	[0.014-0.022] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
635	chr20	6584603	6584604	rs6054383	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	20p12.3	BMP2	rs6054383-T	0.42	2E-9	(EA)	0.016	[0.010-0.022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
635	chr20	6584603	6584604	rs6054383	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	20p12.3	BMP2	rs6054383-T	0.42	2E-10		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
635	chr20	6589372	6589373	rs2145278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p12.3	CASC20	rs2145278-A	NR	3E-8		0.0160646	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
635	chr20	6591115	6591116	rs6107848	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs6107848-A	0.3631	3E-8	(EA, women)	0.0282	[0.018-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6591115	6591116	rs6107848	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20p12.3	LOC149844, BMP2	rs6107848-A	0.3658	2E-6	(EA,women)	0.0272	[0.016-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6591115	6591116	rs6107848	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs6107848-?	0.3631	9E-8	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6592093	6592094	rs6054390	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p12.3	intergenic	rs6054390-A	0.628	1E-21		0.0188	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
635	chr20	6595645	6595646	rs4813800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p12.3		rs4813800-G	NR	9E-18		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
635	chr20	6595645	6595646	rs4813800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20p12.3	CASC20	rs4813800-A	0.3694	1E-9		0.0426	[0.029-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
635	chr20	6601748	6601749	rs4142037	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20p12.3	CASC20	rs4142037-G	NR	3E-8		0.0184797	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
635	chr20	6603621	6603622	rs994308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p12.3		rs994308-T	0.857128	3E-15		0.0227206	[0.017-0.028] unit decrease	Illumina [13479295] (imputed)	N
635	chr20	6603621	6603622	rs994308	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	BMP2	rs994308-C	0.5939	5E-18		1.08	[1.06-1.10]	Affymetrix, Illumina [16900397] (imputed)	N
635	chr20	6608501	6608502	rs1884902	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p12.3		rs1884902-T	0.62628	2E-9		0.013879984	[0.0093-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr20	6609609	6609610	rs200744777	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20p12.3	BMP2	rs200744777-T	0.561375	2E-17		0.0121262	[0.0093-0.0149] unit decrease	Affymetrix [12370749]	N
635	chr20	6609876	6609877	rs6107853	23669352	Graff M	2013-05-12	Hum Mol Genet	Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course.	Body mass index	Up to 13,627 European ancestry individuals	Up to 16,253 European ancestry individuals	20p12.3	BMP2	rs6107853-A	0.45	2E-6		0.04	[0.022-0.058] unit increase	Affymetrix, Illumina [557887] (imputed)	N
635	chr20	6612831	6612832	rs1884897	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.3	NR	rs1884897-?	NR	4E-25				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20p12.3	NR	rs1884897-?	NR	4E-8		0.03452746	[0.022-0.047] unit decrease	Illumina [34656550] (imputed)	N
635	chr20	6612831	6612832	rs1884897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs1884897-?	NR	8E-176				NR [~ 8900000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.3		rs1884897-?	NR	2E-25				NR [~ 8900000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p12.3	NA	rs1884897-A	0.3747	3E-28		0.0184	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	20p12.3	NA	rs1884897-A	0.3747	3E-28		0.0184	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20p12.3	CASC20, BMP2	rs1884897-G	0.6	4E-8		0.015	[0.0091-0.0209] unit increase	Illumina [6108953] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs1884897-A	0.3681	8E-10		0.0225	[0.015-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20p12.3	LOC149844, BMP2	rs1884897-A	0.3681	1E-7		0.0226	[0.014-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs1884897-?	0.3681	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs1884897-A	0.3739	9E-7		0.0204	[0.012-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs1884897-A	0.3739	7E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs1884897-A	0.3739	2E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs1884897-A	0.3739	7E-10		0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs1884897-A	0.3739	3E-7	(women)	0.0254	[0.016-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6612831	6612832	rs1884897	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p12.3	BMP2	rs1884897-G	0.639	7E-7	(EA)	0.016	[0.0095-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
635	chr20	6612831	6612832	rs1884897	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p12.3	BMP2	rs1884897-G	0.635	1E-6		0.015	[0.0088-0.0206] kg/m2 increase	Affymetrix, Illumina [2550021]	N
635	chr20	6612831	6612832	rs1884897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs1884897-A	0.3602	7E-20	(EA)	0.032	[0.025-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6612831	6612832	rs1884897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs1884897-A	0.3602	6E-15	(EA,women)	0.0349	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6612831	6612832	rs1884897	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs1884897-A	0.3602	2E-8	(EA, men)	0.0278	[0.018-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6612831	6612832	rs1884897	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20p12.3	BMP2	rs1884897-A	0.364	1E-48		0.044	[0.038-0.05] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
635	chr20	6613050	6613051	rs2024962	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	20p12.3		rs2024962-?	NR	1E-11				NR [9705931] (imputed)	N
635	chr20	6614690	6614691	rs1321432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.3		rs1321432-C	NR	2E-112		0.0347	[0.032-0.038] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
635	chr20	6620892	6620893	rs967417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.3		rs967417-A	0.457729	7E-13		0.016208697	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr20	6620892	6620893	rs967417	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20p12.3	NR	rs967417-?	NR	1E-6		0.03082693	[0.018-0.043] unit decrease	Illumina [34656550] (imputed)	N
635	chr20	6620892	6620893	rs967417	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	20p12.3	BMP2	rs967417-C	0.53	2E-8		4.3	[2.73-5.87] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
635	chr20	6621684	6621685	rs2145270	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs2145270-C	NR	4E-8		0.0159675	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
635	chr20	6621684	6621685	rs2145270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p12.3		rs2145270-T	0.618371	7E-9		0.013197749	[0.0087-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr20	6621684	6621685	rs2145270	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20p12.3	NR	rs2145270-?	NR	8E-7		0.03060551	[0.018-0.043] unit decrease	Illumina [34656550] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	8E-9		0.01393	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	4E-18	(females)	0.02993	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	4E-8	(females)	0.01905	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	9E-21		0.02062	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	2E-16	(males)	0.008815	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20p12.3	intergenic	rs2145270-C	0.384	1E-20	(females)	0.03027	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
635	chr20	6621684	6621685	rs2145270	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	20p12.3	NA	rs2145270-T	0.6162	1E-26		0.018	[0.015-0.021] unit increase	NR [~ 27400000] (imputed)	N
635	chr20	6621684	6621685	rs2145270	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20p12.3	BMP2	rs2145270-C	0.37	5E-18		1.2	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
635	chr20	6621684	6621685	rs2145270	19079261	Willer CJ	2008-12-14	Nat Genet	Six new loci associated with body mass index highlight a neuronal influence on body weight regulation.	Body mass index	32,387 European ancestry individuals	59,082 European ancestry individuals	20p12.3	BMP2	rs2145270-T	0.65	6E-6				Affymetrix, Illumina [2399588] (imputed)	N
635	chr20	6621716	6621717	rs1000972	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs1000972-A	0.68986	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
635	chr20	6621716	6621717	rs1000972	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p12.3	CASC20, BMP2	rs1000972-?	NR	3E-19		0.04706172	[0.037-0.057] unit decrease	Illumina [27896057] (imputed)	N
635	chr20	6621716	6621717	rs1000972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p12.3		rs1000972-?	NR	6E-34				NR [~ 8900000] (imputed)	N
635	chr20	6623373	6623374	rs979012	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	20p12.3	CASC20	rs979012-T	0.3351	5E-7		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
635	chr20	6623373	6623374	rs979012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20p12.3	NR	rs979012-T	0.3637	4E-43		0.0246	[0.021-0.028] unit increase	NR [~ 27400000] (imputed)	N
635	chr20	6623373	6623374	rs979012	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20p12.3	NA	rs979012-T	0.3637	8E-11		0.0116	[0.0081-0.0151] unit increase	NR [~ 27400000] (imputed)	N
635	chr20	6623373	6623374	rs979012	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs979012-T	0.3493	3E-10	(EA)	0.0248	[0.017-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6623373	6623374	rs979012	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20p12.3	LOC149844, BMP2	rs979012-T	0.3493	7E-8	(EA)	0.0243	[0.015-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6623373	6623374	rs979012	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	LOC149844, BMP2	rs979012-?	0.3493	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6623373	6623374	rs979012	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20p12.3	BMP2	rs979012-T	0.3522	5E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6623373	6623374	rs979012	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	20p12.3	NR	rs979012-T	0.344993542700339	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6623373	6623374	rs979012	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20p12.3	NR	rs979012-T	0.344993542700339	7E-15		0.02709985	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
635	chr20	6623373	6623374	rs979012	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	20p12.3	FERMT1, BMP2	rs979012-C	NR	5E-8		0.109	[0.07-0.148] unit decrease	Affymetrix [28509962] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3453	1E-7	(EA, women)	0.0255	[0.016-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3443	2E-7	(women)	0.0245	[0.015-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3426	3E-14		0.0266	[0.02-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3425	3E-14	(EA)	0.0273	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3413	3E-8	(men)	0.0282	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6623373	6623374	rs979012	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20p12.3	BMP2	rs979012-T	0.3396	7E-8	(EA, men)	0.0284	[0.018-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
635	chr20	6626074	6626075	rs12481480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs12481480-T	NR	3E-18		0.0272809	[0.021-0.033] unit decrease	Affymetrix [323858] (imputed)	N
635	chr20	6626074	6626075	rs12481480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs12481480-T	NR	4E-22		0.0303061	[0.024-0.036] unit decrease	Affymetrix [127266] (imputed)	N
635	chr20	6626074	6626075	rs12481480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs12481480-T	NR	8E-13		0.0204684	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
635	chr20	6626074	6626075	rs12481480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs12481480-T	NR	6E-29		0.0345756	[0.029-0.041] unit decrease	Affymetrix [321114] (imputed)	N
635	chr20	6626074	6626075	rs12481480	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs12481480-T	NR	3E-14		0.0236265	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	2E-9		0.0175846	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	3E-24		0.0331009	[0.027-0.039] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	1E-11		0.0199113	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	1E-29		0.0368201	[0.03-0.043] unit increase	Affymetrix [127266] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	1E-38		0.0418394	[0.036-0.048] unit increase	Affymetrix [321114] (imputed)	N
635	chr20	6626139	6626140	rs2145271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs2145271-T	NR	2E-17		0.0274067	[0.021-0.034] unit increase	Affymetrix [323858] (imputed)	N
635	chr20	6626139	6626140	rs2145271	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs2145271-?	NR	3E-31				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6626139	6626140	rs2145271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20p12.3		rs2145271-?	NR	5E-35				NR [~ 8900000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20p12.3	NR	rs2145272-?	NR	3E-8		0.03581644	[0.023-0.049] unit decrease	Illumina [34656550] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	20p12.3	BMP2	rs2145272-A	0.6376	1E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20p12.3	BMP2	rs2145272-A	0.6376	1E-26		0.0259	[0.021-0.031] unit increase	Affymetrix [19819130] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20p12.3	BMP2	rs2145272-A	0.6376	5E-17		0.0203	[0.016-0.025] unit increase	Affymetrix [19819130] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	20p12.3	NR	rs2145272-G	0.36	2E-45		0.026	[0.022-0.03] unit increase	Affymetrix [2446094] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	20p12.3	NR	rs2145272-G	0.36	5E-8				Affymetrix [2446094] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	20p12.3	NR	rs2145272-A	0.6367	4E-43		0.0247	[0.021-0.028] unit decrease	NR [~ 27400000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20p12.3	NR	rs2145272-G	NR	6E-11		0.018	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
635	chr20	6626217	6626218	rs2145272	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	BMP2	rs2145272-G	0.34830000000000005	3E-8	(EA)	0.0231	[0.015-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	BMP2	rs2145272-G	0.34830000000000005	1E-6	(EA, women)	0.026	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	BMP2	rs2145272-?	0.34830000000000005	8E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20p12.3	BMP2	rs2145272-?	0.34830000000000005	4E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
635	chr20	6626217	6626218	rs2145272	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	20p12.3	BMP2	rs2145272-A	0.88	9E-15		0.063	[0.041-0.085] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
635	chr20	6626217	6626218	rs2145272	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20p12.3	BMP2	rs2145272-A	0.65	2E-24		0.039	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
635	chr20	6626898	6626899	rs4815914	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs4815914-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6627451	6627452	rs78223541	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs78223541-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6632900	6632901	rs6140050	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	20p12.3	CASC20, BMP2	rs6140050-A	0.6334	6E-14		0.031	[0.023-0.039] unit increase	Affymetrix [27624732] (imputed)	N
635	chr20	6632900	6632901	rs6140050	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	20p12.3	NR	rs6140050-C	0.363	5E-6	(EA)	0.047	[0.027-0.067] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
635	chr20	6634894	6634895	rs2206925	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p12.3	BMP2	rs2206925-T	0.364264	2E-16		0.0117606	[0.009-0.0146] unit decrease	Affymetrix [12370749]	N
635	chr20	6635265	6635266	rs6054427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs6054427-G	NR	8E-22		0.0282625	[0.022-0.034] unit increase	Affymetrix [321114] (imputed)	N
635	chr20	6635265	6635266	rs6054427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20p12.3	RP5-859D4.3	rs6054427-G	NR	3E-8		0.0163222	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
635	chr20	6635265	6635266	rs6054427	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	20p12.3	NR	rs6054427-G	NR	6E-7		0.007	[0.0043-0.0097] unit decrease	NR [11010159] (imputed)	N
635	chr20	6635265	6635266	rs6054427	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	20p12.3	NR	rs6054427-G	NR	4E-9		0.00631646	[0.0042-0.0084] unit decrease	NR [11010159] (imputed)	N
635	chr20	6635265	6635266	rs6054427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6054427-?	NR	1E-61				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6635508	6635509	rs4815915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p12.3		rs4815915-A	0.636192	2E-16		0.019412465	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
635	chr20	6635508	6635509	rs4815915	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p12.3	NR	rs4815915-A	0.636748	7E-16		0.015488	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
635	chr20	6638797	6638798	rs6107855	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6107855-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6647273	6647274	rs6054441	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6054441-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6655395	6655407	rs147885582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20p12.3		rs147885582-A	NR	2E-11		0.0144	[0.01-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
635	chr20	6656027	6656028	rs765302	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p12.3	intergenic	rs765302-C	0.5245	3E-16		0.1563	[0.12-0.19] mmHg decrease	Affymetrix [NR] (imputed)	N
635	chr20	6657553	6657554	rs11087740	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20p12.3	BMP2	rs11087740-T	0.5095	2E-19		0.156	[0.12-0.19] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
635	chr20	6665531	6665532	rs6085649	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	20p12.3	intergenic	rs6085649-G	0.456096270827823	2E-12		0.012173496	unit increase	NR [9276018] (imputed)	N
635	chr20	6668192	6668193	rs1008228	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs1008228-A	NR	2E-8		0.0176702	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
635	chr20	6673623	6673624	rs74564651	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p12.3	CASC20, BMP2	rs74564651-?	NR	1E-17		0.042604286	[0.033-0.052] unit increase	Illumina [27896057] (imputed)	N
635	chr20	6674886	6674887	rs6054471	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6054471-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
635	chr20	6678882	6678883	rs6085655	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	20p12.3	FERMT1, BMP2	rs6085655-?	0.015000000000000013	2E-6		1.4699111	[1.21-1.79]	Affymetrix, Illumina [7701827] (imputed)	N
635	chr20	6682650	6682651	rs6133344	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	20p12.3		rs6133344-T	NR	6E-10		0.1534	[0.1-0.2] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
636	chr20	6685376	6685377	rs6085658	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs6085658-T	NR	2E-8		0.0178257	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
636	chr20	6685376	6685377	rs6085658	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	20p12.3	CASC20, LINC01713	rs6085658-T	0.400085274912676	1E-9		0.0291	[0.02-0.038] SD decrease	Illumina [22400000] (imputed)	N
636	chr20	6690100	6690101	rs1015563	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	20p12.3	BMP2	rs1015563-T	0.35	2E-6		1.12	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
636	chr20	6693127	6693128	rs6085661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20p12.3		rs6085661-T	NR	5E-11		0.09	[0.063-0.117] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
636	chr20	6693127	6693128	rs6085661	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20p12.3	NR	rs6085661-T	0.39	2E-14		1.09	[1.06-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
636	chr20	6698371	6698372	rs6085662	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20p12.3		rs6085662-C	0.21	2E-9	(East Asian)	1.12	[1.07-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
636	chr20	6699594	6699595	rs4813802	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20p12.3	BMP2	rs4813802-G	NR	3E-9	(East Asian)	1.1	[1.06-1.13]	Affymetrix, Illumina [up to 47000000] (imputed)	N
636	chr20	6699594	6699595	rs4813802	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20p12.3	BMP2	rs4813802-G	0.21	1E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
636	chr20	6699594	6699595	rs4813802	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	BMP2	rs4813802-G	0.3561	7E-14		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
636	chr20	6699594	6699595	rs4813802	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	20p12.3	NR	rs4813802-G	0.318	1E-9	(EA)	1.0752687	[1.05-1.11]	Affymetrix, Illumina [12931465] (imputed)	N
636	chr20	6699594	6699595	rs4813802	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	20p12.3	BMP2	rs4813802-?	0.206	6E-6		1.1135857	[1.06-1.17]	Illumina [6774630] (imputed)	N
636	chr20	6699594	6699595	rs4813802	23266556	Peters U	2012-12-21	Gastroenterology	Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.	Colorectal cancer	12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls	958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls	20p12.3	BMP2	rs4813802-G	0.34	7E-6		1.1	[1.05-1.14]	Affymetrix, Illumina [2708280] (imputed)	N
636	chr20	6705245	6705246	rs235763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p12.3	RP5-859D4.3	rs235763-C	NR	5E-9		0.0184145	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
636	chr20	6706492	6706493	rs6140071	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	20p12.3		rs6140071-T	0.201635225	2E-9		1.1400142	[1.09254882-1.189541761]	Illumina [8919992] (imputed)	N
636	chr20	6709837	6709838	rs2650965	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p12.3	LINC01713	rs2650965-A	0.6707	6E-14		0.0149	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
636	chr20	6709837	6709838	rs2650965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs2650965-?	NR	2E-39				NR [~ 8900000] (imputed)	N
636	chr20	6726126	6726127	rs17804047	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	20p12.3	NR	rs17804047-T	NR	6E-6		1.8	NR	Illumina [6470615] (imputed)	N
636	chr20	6749181	6749184	rs201402819	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs201402819-?	NR	9E-24		0.0406706	[0.033-0.049] unit decrease	Affymetrix [20259828] (imputed)	N
636	chr20	6749181	6749184	rs201402819	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	BMP2	rs201402819-CTGT	0.978188	4E-10		0.0767973	[0.052-0.101] unit decrease	NR [17166351] (imputed)	N
636	chr20	6749181	6749184	rs201402819	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	BMP2	rs201402819-CTGT	0.977857	2E-6	(men)	0.0795136	[0.042-0.117] unit decrease	NR [17166351] (imputed)	N
636	chr20	6751088	6751089	rs2273074	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.3	BMP2	rs2273074-A	0.043	1E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
636	chr20	6755008	6755009	rs13043599	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	BMP2	rs13043599-C	0.928474	1E-31		0.0419288	[0.035-0.049] unit decrease	NR [13737936] (imputed)	N
636	chr20	6755008	6755009	rs13043599	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs13043599-?	NR	1E-29				NR [~ 8900000] (imputed)	N
636	chr20	6755008	6755009	rs13043599	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs13043599-?	NR	9E-26		0.0417829	[0.034-0.05] unit decrease	Affymetrix [20259828] (imputed)	N
636	chr20	6760430	6760431	rs170986	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20p12.3	NR	rs170986-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
636	chr20	6760430	6760431	rs170986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20p12.3		rs170986-?	NR	2E-8				NR [~ 8900000] (imputed)	N
636	chr20	6761511	6761512	rs6054512	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	20p12.3	NR	rs6054512-T		5E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
636	chr20	6761511	6761512	rs6054512	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20p12.3	BMP2	rs6054512-T	0.6391	4E-7		0.0589	[0.036-0.082] unit decrease	Illumina [2500000] (imputed)	N
636	chr20	6761764	6761765	rs235770	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p12.3	BMP2	rs235770-?		4E-31				Affymetrix, Illumina [NR] (imputed)	N
636	chr20	6761764	6761765	rs235770	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	20p12.3	BMP2	rs235770-T	0.3717	3E-9		5.926	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
636	chr20	6761764	6761765	rs235770	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	20p12.3	BMP2	rs235770-T	0.39	2E-8		0.089	[0.058-0.12] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
636	chr20	6762220	6762221	rs28488	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	BMP2	rs28488-T	0.6388	3E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
636	chr20	6762556	6762557	rs62194957	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	20p12.3		rs62194957-A	0.89	3E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
636	chr20	6776497	6776498	rs2650976	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs2650976-?	NR	1E-14		0.0180117	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
637	chr20	6835157	6835158	rs6140102	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	20p12.3		rs6140102-A	0.44161	2E-7		0.034964	[0.022-0.048] unit increase	Affymetrix [15580782] (imputed)	N
637	chr20	6853447	6853448	rs1555136	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	BMP2	rs1555136-T	0.368211	5E-18		0.0166749	[0.013-0.02] unit increase	NR [13737936] (imputed)	N
637	chr20	6855400	6855401	rs6054572	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs6054572-?	NR	5E-16				NR [~ 8900000] (imputed)	N
637	chr20	6856347	6856347	rs10668467	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs10668467-?	NR	1E-16		0.0166938	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
637	chr20	6897592	6897593	rs4592924	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p12.3	NR	rs4592924-?		7E-6				Illumina [4322238] (imputed)	N
637	chr20	6902149	6902150	rs6085728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs6085728-?	NR	2E-15				NR [~ 8900000] (imputed)	N
637	chr20	6934896	6934897	rs4815952	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p12.3	intergenic	rs4815952-T	0.4779	2E-17		0.0164	[0.013-0.02] unit increase	Affymetrix [18391927] (imputed)	N
637	chr20	6936181	6936182	rs6054625	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs6054625-?	NR	1E-13		0.0197286	[0.014-0.025] unit increase	Affymetrix [20259828] (imputed)	N
638	chr20	6960527	6960528	rs6085792	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	20p12.3	NR	rs6085792-?	NR	7E-7		0.0452	[0.027-0.063] unit decrease	Illumina [at least 560000] (imputed)	N
638	chr20	6960527	6960528	rs6085792	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	20p12.3	BMP2, HAO1	rs6085792-?	NR	7E-7		1.0460252	[1.03-1.06]	Illumina [13754664] (imputed)	N
638	chr20	6980634	6980635	rs6085820	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	20p12.3	intergenic	rs6085820-A	0.09	9E-6				Affymetrix [614963]	N
638	chr20	6982362	6982363	rs6054661	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	20p12.3		rs6054661-?	NR	3E-6		0.3301961	[0.19-0.47] unit increase	Illumina [9875426] (imputed)	N
638	chr20	6998681	6998682	rs6085831	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p12.3	NR	rs6085831-?	NR	9E-9				Affymetrix [NR]	N
638	chr20	7014444	7014445	rs2149642	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	20p12.3	BMP2	rs2149642-T	0.775	2E-11		0.007	[0.005-0.009] unit increase	NR [57525634] (imputed)	N
638	chr20	7032297	7032298	rs12625751	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20p12.3	NR	rs12625751-T	0.055	2E-6	(IFNgamma_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
638	chr20	7067737	7067738	rs3920540	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Nose morphology (partial least square model)	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	20p12.3	BMP2	rs3920540-?	NR	5E-8	(Uyghur, female)	0.0652	[NR] unit increase	Illumina [8100752] (imputed)	N
639	chr20	7091611	7091612	rs232660	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	20p12.3	NR	rs232660-A	0.9521	1E-9		0.147	[0.1-0.194] unit decrease	Illumina [~ 10600000] (imputed)	N
639	chr20	7095112	7095113	rs6140183	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs6140183-?	NR	2E-18		0.0194402	[0.015-0.024] unit increase	Affymetrix [20259828] (imputed)	N
639	chr20	7103708	7103709	rs1159530	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p12.3		rs1159530-C	0.33	2E-17		8.51	z score increase	Affymetrix [9061022] (imputed)	N
639	chr20	7103708	7103709	rs1159530	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p12.3	NR	rs1159530-C	0.3319	4E-15				NR [9056863] (imputed)	N
639	chr20	7106288	7106289	rs1884302	32266521	Justice CM	2020-04-07	Hum Genet	A genome-wide association study implicates the BMP7 locus as a risk factor for nonsyndromic metopic craniosynostosis.	Midline nonsyndromic craniosynostosis	345 European ancestry trios	NA	20p12.3	NR	rs1884302-C	NR	2E-6				Illumina [306233]	N
639	chr20	7106288	7106289	rs1884302	23160099	Justice CM	2012-11-18	Nat Genet	A genome-wide association study identifies susceptibility loci for nonsyndromic sagittal craniosynostosis near BMP2 and within BBS9.	Sagittal craniosynostosis	130 European ancestry trios	172 cases, 548 controls	20p12.3	BMP2	rs1884302-C	0.30	1E-39		4.38	[3.51-5.45]	Illumina [915307]	N
639	chr20	7107044	7107045	rs6117637	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	LINC01428	rs6117637-G	0.743342	2E-18		0.0185937	[0.014-0.023] unit increase	NR [13737936] (imputed)	N
639	chr20	7114285	7114286	rs6054759	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.3		rs6054759-C	0.33	1E-78		18.76	z score increase	Affymetrix [9061022] (imputed)	N
639	chr20	7118591	7118592	rs6054764	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p12.3		rs6054764-C	0.33	1E-21		9.58	z score increase	Affymetrix [9061022] (imputed)	N
639	chr20	7118591	7118592	rs6054764	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p12.3	NR	rs6054764-C	0.3307	1E-17				NR [9056863] (imputed)	N
639	chr20	7122977	7122978	rs2876076	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	20p12.3		rs2876076-?	NR	4E-15				NR [9705931] (imputed)	N
639	chr20	7145714	7145715	rs6117652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs6117652-?	NR	6E-21				NR [~ 8900000] (imputed)	N
639	chr20	7154671	7154672	rs143330165	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	20p12.3	NR	rs143330165-T	0.01	2E-8		1.04	[0.67-1.41] unit increase	Affymetrix [9231066] (imputed)	N
639	chr20	7154671	7154672	rs143330165	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	20p12.3	NR	rs143330165-T	0.01	2E-8		1.04	[0.67-1.41] unit increase	Affymetrix [9231066] (imputed)	N
639	chr20	7169790	7169791	rs6117669	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	20p12.3	NR	rs6117669-A	0.2	2E-7		0.2665	[0.17-0.36] unit increase	Illumina [up to 730525]	N
639	chr20	7180055	7180056	rs6085920	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	20p12.3	NR	rs6085920-?	NR	6E-6		0.4	[NR] mg/dl decrease in uric acid levels	Affymetrix [361034]	N
639	chr20	7185958	7185959	rs6117690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p12.3		rs6117690-?	NR	2E-8				NR [~ 8900000] (imputed)	N
640	chr20	7233349	7233350	rs6085948	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	20p12.3	NR	rs6085948-G		1E-6		0.098	[0.058-0.138] SD units decrease	NR [10700000] (imputed)	N
640	chr20	7239146	7239147	rs6054852	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs6054852-G	0.03136	2E-8	(LRG1)	0.03369	NR unit increase	Illumina [1671387] (imputed)	N
640	chr20	7243008	7243009	rs6117725	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p12.3	NR	rs6117725-C	0.233576	3E-9		0.0217367	[0.015-0.029] unit increase	NR [19129689] (imputed)	N
640	chr20	7243539	7243540	rs6117726	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p12.3	AL080248.1	rs6117726-T	0.5064	7E-14		0.0143	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
640	chr20	7243539	7243540	rs6117726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs6117726-?	NR	4E-14				NR [~ 8900000] (imputed)	N
640	chr20	7259924	7259925	rs10485715	26845276	Ikeda M	2016-01-01	J Clin Psychiatry	Genome-wide environment interaction between depressive state and stressful life events.	Major depressive disorder (stressful life events interaction)	308 East Asian ancestry prepressive cases, 780 East Asian ancestry non-depressive controls	NA	20p12.3	BMP2	rs10485715-C	0.144	8E-9				Illumina [418225]	N
640	chr20	7263755	7263756	rs4815993	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	20p12.3		rs4815993-A	0.348	9E-6		10.09	[5.749-14.43] unit increase	Affymetrix [6939676] (imputed)	N
640	chr20	7266085	7266086	rs6085968	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs6085968-?	NR	2E-9				NR [~ 8900000] (imputed)	N
640	chr20	7294902	7294903	rs6054906	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	20p12.3	intergenic	rs6054906-?	NR	3E-6	(SF4)			Affymetrix [5476100] (imputed)	N
640	chr20	7337883	7337884	rs16993461	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20p12.3	NR	rs16993461-G	0.0409339	2E-8		0.0955351	[0.062-0.129] unit decrease	Affymetrix [17914406] (imputed)	N
641	chr20	7358422	7358423	rs11908000	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	20p12.3	HAO1	rs11908000-T		2E-6		3.03	[1.92-4.77]	Illumina [644674]	N
641	chr20	7372778	7372779	rs2423240	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 231)	19,670 European ancestry individuals	NA	20p12.3		rs2423240-?	NR	9E-21				NR [9705931] (imputed)	N
641	chr20	7385957	7385958	rs6054973	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	20p12.3	intergenic	rs6054973-?	NR	1E-7				Affymetrix [786195]	N
641	chr20	7402808	7402809	rs6038821	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20p12.3	LINC01706	rs6038821-T	0.038322	4E-6		0.059577	[0.034-0.085] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
641	chr20	7447863	7447864	rs4640459	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	20p12.3	intergenic	rs4640459-?	NR	7E-6		0.113	[0.058-0.168] unit decrease	Illumina [at least 13000000] (imputed)	N
641	chr20	7467295	7467296	rs2092846	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	20p12.3	LOC101929312, HAO1	rs2092846-T	0.31	7E-7	(Nasal bridge height)	0.339	[NR] unit increase	Affymetrix [311944]	N
642	chr20	7551553	7551554	rs6117854	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	MIR8062	rs6117854-G	0.673241	3E-98		0.0440968	[0.04-0.048] unit increase	NR [13737936] (imputed)	N
642	chr20	7551553	7551554	rs6117854	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs6117854-?	NR	2E-79				NR [~ 8900000] (imputed)	N
642	chr20	7551553	7551554	rs6117854	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs6117854-?	NR	4E-81		0.0415636	[0.037-0.046] unit increase	Affymetrix [20259828] (imputed)	N
642	chr20	7551553	7551554	rs6117854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	MIR8062	rs6117854-G	0.675266	6E-8	(men)	0.0306989	[0.02-0.041] unit increase	NR [17166351] (imputed)	N
642	chr20	7551553	7551554	rs6117854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	MIR8062	rs6117854-G	0.674431	3E-25		0.0352727	[0.028-0.042] unit increase	NR [17166351] (imputed)	N
642	chr20	7551553	7551554	rs6117854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.3	MIR8062	rs6117854-G	0.673701	1E-19	(women)	0.041716	[0.032-0.051] unit increase	NR [17166351] (imputed)	N
642	chr20	7552503	7552504	rs6108011	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	20p12.3	intergenic	rs6108011-?	0.28	6E-6	(RBCC)			Affymetrix [70897]	N
642	chr20	7593265	7593266	rs34031061	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs34031061-?	NR	6E-50		0.0325518	[0.028-0.037] unit increase	Affymetrix [20259828] (imputed)	N
643	chr20	7610002	7610002	rs755083964	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.3		rs755083964-?	NR	4E-11		0.0161124	[0.011-0.021] unit increase	Affymetrix [20259828] (imputed)	N
643	chr20	7624746	7624747	rs6086143	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.3	HAO1	rs6086143-A	0.564918	3E-11		0.0131448	[0.0093-0.017] unit increase	NR [13737936] (imputed)	N
643	chr20	7638948	7638949	rs2206405	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	20p12.3	NR	rs2206405-T	0.7535	1E-6		0.1241	[0.074-0.174] unit increase	Illumina [up to 1980188] (imputed)	N
643	chr20	7654372	7654373	rs4816017	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	20p12.3	HAO1	rs4816017-A	0.29	7E-9		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
643	chr20	7654372	7654373	rs4816017	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	20p12.3	HAO1	rs4816017-A	0.29	8E-8		0.0329	[0.021-0.045] unit decrease	Affymetrix [at least 8900000] (imputed)	N
643	chr20	7655954	7655955	rs6077240	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.3	NR	rs6077240-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
643	chr20	7718044	7718045	rs6055286	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20p12.3	NR	rs6055286-A	0.15	1E-10		1.11	[1.07-1.14]	Affymetrix, Illumina [> 10000000] (imputed)	N
644	chr20	7740975	7740976	rs11087784	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	HAO1	rs11087784-G	0.1523	3E-13		1.09	[1.07-1.12]	Affymetrix, Illumina [16900397] (imputed)	N
644	chr20	7749390	7749391	rs6086194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20p12.3		rs6086194-C	NR	6E-14		0.1035	[0.076-0.131] unit increase	Affymetrix, Illumina [25843452] (imputed)	N
644	chr20	7749466	7749467	rs6086195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20p12.3		rs6086195-G	0.321642895	4E-10		0.11244234	[0.077-0.148] unit increase	Illumina [13428297] (imputed)	N
644	chr20	7752365	7752366	rs6077251	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (cisplatin)	176 Japanese ancestry cases, 471 Japanese ancestry controls	NA	20p12.3	SFRS13AP2	rs6077251-T	0.153	3E-6	(Allelic model)	2.065	[1.537-2.773]	Illumina [733202]	N
644	chr20	7780745	7780746	rs147967569	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	20p12.3	NR	rs147967569-T	0.0153959	7E-7		1.071	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
644	chr20	7803219	7803220	rs117253780	28520984	Saccone NL	2017-05-17	Nicotine Tob Res	Genome-wide association study of heavy smoking and daily/nondaily smoking in the Hispanic Community Health Study / Study of Latinos (HCHS/SOL).	Smoking status (heavy vs light)	1,929 Hispanic heavy smoker cases, 3,156 Hispanic light smoker controls	NA	20p12.3	HAO1	rs117253780-?	NR	3E-8		2.86	[1.96-4.18]	Illumina [~ 11400000] (imputed)	N
644	chr20	7811476	7811477	rs6077266	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	20p12.3	NR	rs6077266-?	NR	5E-7		8190.0923	NR unit decrease	Illumina [2379855]	N
644	chr20	7812349	7812350	rs2423279	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20p12.3	HAO1	rs2423279-C	0.31	3E-10		1.1	[1.06-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
644	chr20	7812349	7812350	rs2423279	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	20p12.3	NR	rs2423279-C	0.31	3E-12		1.13	[1.09-1.17]	Affymetrix, Illumina [~ 4000000] (imputed)	N
644	chr20	7812349	7812350	rs2423279	24836286	Zhang B	2014-05-18	Nat Genet	Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.	Colorectal cancer	2,098 East Asian ancestry cases, 6,172 East Asian ancestry controls	12,865 East Asian ancestry cases, 25,773 East Asian ancestry controls, up to 16,984 European ancestry cases, up to 18,262 European ancestry controls	20p12.3	HAO1	rs2423279-C	0.31	3E-12	(East Asian)	1.13	[1.09-1.17]	Affymetrix, Illumina [2400000] (imputed)	N
644	chr20	7812349	7812350	rs2423279	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	20p12.3	PLCB1, HAO1	rs2423279-C	0.302	2E-7	(East Asian)	1.14	[1.08-1.19]	Affymetrix, Illumina [1636380] (imputed)	N
644	chr20	7812349	7812350	rs2423279	23263487	Jia WH	2012-12-23	Nat Genet	Genome-wide association analyses in East Asians identify new susceptibility loci for colorectal cancer.	Colorectal cancer	2,098 East Asian ancestry cases, 5,749 East Asian ancestry controls	5,358 East Asian ancestry cases, 5,922 East Asian ancestry controls, 26,060 European ancestry individuals	20p12.3	PLCB1, HAO1	rs2423279-C	0.252	7E-9		1.1	[1.06-1.14]	Affymetrix, Illumina [1636380] (imputed)	N
644	chr20	7819767	7819768	rs2423294	25064007	Nakajima M	2014-07-27	Nat Genet	A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.	Ossification of the posterior longitudinal ligament of the spine	1,112 Japanese ancestry cases, 6,810 Japanese ancestry controls	548 Japanese ancestry cases, 6,469 Japanese ancestry controls	20p12.3	HAO1	rs2423294-T	0.155	1E-13		1.41	[1.29-1.55]	Illumina [5163786] (imputed)	N
644	chr20	7833045	7833046	rs8114643	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	20p12.3		rs8114643-G	0.135812	2E-9		1.2072921	NR	Affymetrix [7846216] (imputed)	N
644	chr20	7838134	7838135	rs717433	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	20p12.3	HAO1	rs717433-T	0.76	1E-6		0.065	[0.038-0.092] unit increase	Illumina [2385183] (imputed)	N
644	chr20	7844402	7844403	rs6055341	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal polyp and colorectal cancer (MTAG)	11,292 East Asian ancestry cases, 237,990 East Asian ancestry controls	NA	20p12.3		rs6055341-?	NR	1E-12	(Colorectal polyp)	0.91	[0.89-0.93]	Illumina [NR] (imputed)	N
644	chr20	7844828	7844829	rs11476204	34671089	Hikino K	2021-10-21	J Hum Genet	Genome-wide association study of colorectal polyps identified highly overlapping polygenic architecture with colorectal cancer.	Colorectal cancer	6,845 East Asian ancestry cases, 80,764 East Asian ancestry controls	NA	20p12.3		rs11476204-?	NR	1E-9		1.13	[1.08-1.17]	Illumina [NR] (imputed)	N
644	chr20	7845385	7845386	rs2049942	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Colorectal cancer	7,062 Japanese ancestry cases, 195,745 Japanese ancestry controls	NA	20p12.3		rs2049942-G	0.672765772	1E-9		0.8929148	[0.861041474-0.925967892]	Illumina [8919992] (imputed)	N
645	chr20	7880889	7880890	rs6077285	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	20p12.3	NR	rs6077285-G		3E-7		0.1393	[0.086-0.193] SD units increase	NR [10700000] (imputed)	N
645	chr20	7884259	7884260	rs34672598	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	20p12.3	HAO1	rs34672598-T	0.87	3E-6		2.1	[1.22-2.98] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
645	chr20	7901782	7901783	rs113893973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs113893973-A	0.0122	5E-10	(AZGP1)	0.03881	NR unit increase	Illumina [1671387] (imputed)	N
645	chr20	7953180	7953181	rs117619823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.3		rs117619823-?	NR	2E-8				NR [~ 8900000] (imputed)	N
645	chr20	7961714	7961715	rs1058029	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	20p12.3	TMX4	rs1058029-?	NR	8E-9		0.01036	[0.0056-0.0151] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
645	chr20	7981185	7981186	rs148208076	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	20p12.3	NR	rs148208076-G	NR	6E-8		2.1557	NR	Illumina [at least 560000] (imputed)	N
646	chr20	8016251	8016252	rs6055485	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Bacteroides)	1,068 Japanese ancestry individuals	NA	20p12.3	RP5-971N18.3	rs6055485-C	0.31	3E-6		0.0403	[0.023-0.057] unit decrease	Illumina [6380737] (imputed)	N
646	chr20	8053550	8053551	rs6133544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.3		rs6133544-?	NR	4E-9				NR [~ 8900000] (imputed)	N
646	chr20	8064553	8064554	rs118172039	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20p12.3	Intergenic	rs118172039-?		3E-6		1.9	[1.45-2.48]	Illumina [7645193] (imputed)	N
646	chr20	8090639	8090640	rs8117834	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Chronic kidney disease	658 European ancestry child cases, 1,347 European ancestry child controls	NA	20p12.3	PLCB1, TMX4	rs8117834-T	0.14	6E-6		1.68	[1.34-2.10]	Illumina [~ 8300000] (imputed)	N
646	chr20	8114703	8114704	rs6118083	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	20p12.3	PLCB1	rs6118083-?	NR	7E-6	(Colorword)			Illumina [up to 563855]	N
646	chr20	8125394	8125395	rs8113925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p12.3	PLCB1	rs8113925-G	0.461227	2E-11		0.014949961	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr20	8126919	8126920	rs12481262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs12481262-C	0.451253	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
647	chr20	8126919	8126920	rs12481262	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20p12.3	NR	rs12481262-C	0.460009	5E-13		0.014609	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
647	chr20	8129490	8129491	rs8121126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p12.3		rs8121126-?	NR	5E-10				NR [~ 8900000] (imputed)	N
647	chr20	8137938	8137939	rs112341098	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLCB1	rs112341098-?	NR	2E-12	(male)	2.76857	[NR] unit decrease	Affymetrix [NR] (imputed)	N
647	chr20	8137938	8137939	rs112341098	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLCB1	rs112341098-?	NR	1E-11		1.39373	[NR] unit decrease	Affymetrix [NR] (imputed)	N
647	chr20	8142326	8142327	rs56326021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p12.3	PLCB1	rs56326021-T	0.398779	6E-9		0.013188823	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
647	chr20	8144639	8144640	rs978266	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p12.3	PLCB1	rs978266-G	0.472678	2E-10		0.014205434	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr20	8174057	8174058	rs2294256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20p12.3		rs2294256-T	NR	8E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
647	chr20	8174057	8174058	rs2294256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20p12.3	PLCB1	rs2294256-T	0.482201	1E-12		0.015772095	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
647	chr20	8213785	8213786	rs6055685	26079190	Galfalvy H	2015-06-16	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of suicidal behavior.	Suicide ideation score in major depressive disorder	358 European ancestry individuals	NA	20p12.3	PLCB1	rs6055685-A	0.18	8E-7		3.568	Suicidal ideation score increase	Illumina [794207]	N
647	chr20	8226676	8226677	rs60800602	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.3	NR	rs60800602-T	0.01568	1E-8	(PON1)	0.1214	NR unit increase	Illumina [1671387] (imputed)	N
647	chr20	8245292	8245293	rs2743173	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	20p12.3	PLCB1	rs2743173-T	0.567	2E-7	(Hispanic)	0.019	[0.011-0.027] unit increase	Affymetrix, Illumina [NR] (imputed)	N
648	chr20	8275644	8275645	rs62195918	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20p12.3	NR	rs62195918-?	NR	5E-6	(AA)	0.3458	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
648	chr20	8277942	8277943	rs2745761	22664479	Han JY	2012-06-05	Pharmacogenomics J	A genome-wide association study for irinotecan-related severe toxicities in patients with advanced non-small-cell lung cancer.	Response to irinotecan in non-small-cell lung cancer	101 non-small-cell lung cancer cases	146 non-small-cell lung cancer cases	20p12.3	PLCB1	rs2745761-C	0.072	6E-6	(G3D)	4.8	[2.30-10.0]	Affymetrix [312230]	N
648	chr20	8299101	8299102	rs2745771	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p12.3	PLCB1	rs2745771-?		9E-6				Illumina [4322238] (imputed)	N
648	chr20	8303119	8303120	rs1509117	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20p12.3	PLCB1	rs1509117-A	0.3018	1E-12		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
648	chr20	8303119	8303120	rs1509117	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20p12.3	PLCB1	rs1509117-A	0.3044	4E-13		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
648	chr20	8311461	8311462	rs984283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.3		rs984283-?	NR	3E-8				NR [~ 8900000] (imputed)	N
648	chr20	8315316	8315317	rs6055748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	20p12.3		rs6055748-G	NR	3E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
648	chr20	8315316	8315317	rs6055748	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20p12.3	PLCB1	rs6055748-A	0.695	2E-8		0.0021	[0.0013-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
648	chr20	8328830	8328831	rs139465532	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	20p12.3	PLCB1	rs139465532-G	0.009	4E-7	(Other antidepressants [N06AX])	5.67		Illumina [16500000] (imputed)	N
648	chr20	8367855	8367856	rs708921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p12.3		rs708921-G	NR	2E-8		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-A	0.2101	9E-21	(MTAG)	0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-T	0.7899	6E-18		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-A	0.2097	4E-21	(MTAG)	0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-T	0.7903	6E-14		0.0209	[0.015-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-A	0.2112	1E-11	(MTAG)	0.0109	[0.0078-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
649	chr20	8400666	8400667	rs708915	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20p12.3	Intergenic	rs708915-A	0.2117	2E-9	(MTAG)	0.0168	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
649	chr20	8401715	8401716	rs708914	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	TXNDC13	rs708914-?	NR	7E-6	(2-hydroxyglutaric acid)	0.16846082	[0.095-0.242] unit increase	Affymetrix [at least 2500000] (imputed)	N
649	chr20	8407073	8407074	rs6055808	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	20p12.3		rs6055808-?	NR	8E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
649	chr20	8449373	8449374	rs8117408	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20p12.3		rs8117408-C	0.1336	3E-6	(East Asian)	1.1	[1.06-1.15]	Affymetrix, Illumina [up to 47000000] (imputed)	N
649	chr20	8495044	8495045	rs13433330	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p12.3	NR	rs13433330-?	NR	1E-8				Illumina [7760689] (imputed)	N
649	chr20	8498739	8498740	rs6086480	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	20p12.3	NR	rs6086480-?	NR	2E-6	(ACE metric)	0.92623	[0.54-1.31] unit decrease	Illumina [5293637] (imputed)	N
649	chr20	8498897	8498898	rs6055878	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	20p12.3	NR	rs6055878-?	NR	2E-7	(Richness)	15.6947	[9.79-21.6] unit decrease	Illumina [5293637] (imputed)	N
649	chr20	8508497	8508498	rs73598282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.3		rs73598282-A	NR	8E-17		0.0231	[0.018-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
649	chr20	8508497	8508498	rs73598282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p12.3		rs73598282-A	0.146901	9E-17		0.0236906	[0.018-0.029] unit decrease	Illumina [13479295] (imputed)	N
650	chr20	8541991	8541992	rs6140637	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	20p12.3		rs6140637-A	NR	5E-6		0.790375	[0.69-0.89] unit increase	Affymetrix [825927] (imputed)	N
650	chr20	8568070	8568071	rs556532366	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20p12.3	HAO1	rs556532366-T	0.0029	9E-6	(conditioned on lead SNPs in LD)	1.6	[1.30-1.97]	Affymetrix, Illumina [16900397] (imputed)	N
650	chr20	8591195	8591196	rs6086536	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Nonalcoholic fatty liver disease	37 African American cases, 177 Japanese American cases, 140 Latino cases, 85 Native Hawaiian cases, 67 European ancestry cases, 218 African American controls, 221 Japanese American controls, 182 Latino controls, 158 Native Hawaiian controls, 244 European ancestry controls	NA	20p12.3	NR	rs6086536-?	NR	8E-7		1.5873016	[1.32-1.92]	Illumina [9789995] (imputed)	N
650	chr20	8603949	8603950	rs6086540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p12.3	PLCB1	rs6086540-C	0.506826	2E-26		0.023610694	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8603949	8603950	rs6086540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.3	PLCB1	rs6086540-C	0.507128	2E-63		0.037879415	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8603949	8603950	rs6086540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p12.3	PLCB1	rs6086540-C	0.507159	1E-26		0.024128124	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.484733	5E-38				Affymetrix, Illumina [24588908] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.508794	5E-41		0.024635	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.488289	3E-23				Affymetrix, Illumina [24246363] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.508545	2E-25		0.018933	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.484735	2E-11				Affymetrix, Illumina [21126107] (imputed)	N
650	chr20	8604180	8604181	rs6055955	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	20p12.3	NR	rs6055955-T	0.508055	3E-13		0.014666	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
650	chr20	8604180	8604181	rs6055955	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p12.3		rs6055955-?	NR	1E-27				NR [~ 8900000] (imputed)	N
650	chr20	8604592	8604593	rs6077396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20p12.3		rs6077396-A	NR	9E-20		0.0185	[0.015-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
650	chr20	8604592	8604593	rs6077396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p12.3	PLCB1	rs6077396-A	0.507334	7E-74		0.04025585	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8604592	8604593	rs6077396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	20p12.3	PLCB1	rs6077396-G	0.507117	9E-13		0.0155427	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8604592	8604593	rs6077396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs6077396-G	0.494885	9E-26				Affymetrix, Illumina [17210439] (imputed)	N
650	chr20	8604592	8604593	rs6077396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20p12.3	NR	rs6077396-G	0.491903	1E-28		0.021357	[0.018-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
650	chr20	8604592	8604593	rs6077396	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p12.3		rs6077396-?	NR	4E-8				NR [~ 8900000] (imputed)	N
650	chr20	8605303	8605304	rs8126070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	20p12.3	NR	rs8126070-G	NR	6E-10		0.0199	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
650	chr20	8607392	8607393	rs4432538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20p12.3		rs4432538-A	NR	2E-28		0.0233	[0.019-0.027] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
650	chr20	8607392	8607393	rs4432538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20p12.3		rs4432538-G	0.492	2E-16				Affymetrix [10369434] (imputed)	N
650	chr20	8607392	8607393	rs4432538	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	20p12.3		rs4432538-G	0.492	5E-19				Affymetrix [10369434] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20p12.3	PLCB1	rs4432538-A	0.507329	3E-9		0.013113609	[0.0088-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p12.3	PLCB1	rs4432538-A	0.507594	1E-19		0.020405555	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20p12.3	PLCB1	rs4432538-A	0.507298	1E-38		0.0287615	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.485651	3E-32				Affymetrix, Illumina [24649327] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.508738	2E-33		0.02218	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.492762	1E-54				Affymetrix, Illumina [23467995] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.508586	5E-54		0.029011	[0.025-0.033] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.49278	6E-46				Affymetrix, Illumina [23472807] (imputed)	N
650	chr20	8607392	8607393	rs4432538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20p12.3	NR	rs4432538-A	0.508567	2E-46		0.027105	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
650	chr20	8607392	8607393	rs4432538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20p12.3	PLCB1	rs4432538-A	0.5078	6E-25		0.03782869	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8607392	8607393	rs4432538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p12.3	PLCB1	rs4432538-A	0.5078	3E-12		0.02509938	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8607392	8607393	rs4432538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20p12.3	PLCB1	rs4432538-A	0.5077	4E-11		0.02417434	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8607392	8607393	rs4432538	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20p12.3	PLCB1	rs4432538-A	0.5077	1E-14		0.02769973	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8609587	8609588	rs1883932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20p12.3		rs1883932-T	NR	9E-20		0.0217	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
650	chr20	8609587	8609588	rs1883932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20p12.3		rs1883932-T	NR	8E-19		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
650	chr20	8609587	8609588	rs1883932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20p12.3		rs1883932-T	NR	1E-32		0.0276	[0.023-0.032] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508291	7E-15		0.01732088	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508291	1E-15		0.017872956	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508354	2E-11		0.014870415	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-A	0.491624	1E-40		0.029663635	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.50845	7E-27		0.023988731	[0.02-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508409	2E-19		0.0198078	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508346	3E-11		0.014698208	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p12.3	PLCB1	rs1883932-T	0.508345	6E-12		0.015227393	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
650	chr20	8609587	8609588	rs1883932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	20p12.3	PLCB1	rs1883932-T	0.5094	3E-11		0.02380199	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8609587	8609588	rs1883932	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	20p12.3	PLCB1	rs1883932-T	0.5096	4E-12		0.02499327	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
650	chr20	8616587	8616588	rs6039211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	20p12.3		rs6039211-G	NR	1E-12		0.0482	[0.035-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
650	chr20	8616587	8616588	rs6039211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20p12.3		rs6039211-G	NR	2E-19		0.045	[0.035-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
650	chr20	8616587	8616588	rs6039211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p12.3		rs6039211-?	NR	1E-17				NR [~ 8900000] (imputed)	N
650	chr20	8622479	8622480	rs6039216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20p12.3		rs6039216-C	NR	1E-10		0.0375	[0.026-0.049] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
650	chr20	8622479	8622480	rs6039216	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20p12.3	PLCB1	rs6039216-C	0.36254	6E-21		0.076972716	[0.061-0.093] unit decrease	Affymetrix [7288503] (imputed)	N
650	chr20	8622479	8622480	rs6039216	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	20p12.3	PLCB1	rs6039216-C	0.362735	4E-15		0.06730723	[0.051-0.084] unit decrease	Affymetrix [7288503] (imputed)	N
650	chr20	8622479	8622480	rs6039216	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20p12.3	PLCB1	rs6039216-C	0.360894	4E-20		0.05769042	[0.045-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
650	chr20	8622479	8622480	rs6039216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20p12.3		rs6039216-?	NR	2E-25				NR [~ 8900000] (imputed)	N
650	chr20	8623249	8623250	rs4813867	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20p12.3	PLCB1	rs4813867-C	0.337352	2E-11		0.057213284	[0.041-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
650	chr20	8625249	8625250	rs74676896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p12.3		rs74676896-C	NR	2E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
650	chr20	8626270	8626271	rs6108168	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20p12.3	PLCB1	rs6108168-A	0.25	1E-11		0.211	[0.15-0.27] unit decrease	Affymetrix [~ 9800000] (imputed)	N
650	chr20	8629588	8629589	rs11478396	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20p12.3		rs11478396-T	NR	5E-10		0.0144	[0.0099-0.0189] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
650	chr20	8629806	8629807	rs1473698	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Lactate levels	114,806 European ancestry individuals	NA	20p12.3		rs1473698-C	0.597986	5E-9		0.0247335	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
650	chr20	8631626	8631627	rs8118986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20p12.3		rs8118986-G	NR	9E-14		0.0614	[0.045-0.077] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
650	chr20	8633397	8633398	rs8115555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20p12.3	PLCB1	rs8115555-A	0.218682	5E-11		0.01761839	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
650	chr20	8638232	8638233	rs6140671	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	20p12.3	PLCB1	rs6140671-G	0.07	4E-7	(Hispanic/Latino)	0.5	[0.32-0.68] unit decrease	Illumina [up to 13042663] (imputed)	N
651	chr20	8698112	8698113	rs3859675	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neuritic plaque	2,701 European ancestry men, 3,275 European ancestry women	NA	20p12.3	PLCB1	rs3859675-A	0.110554	5E-6		0.539169	[0.31-0.77] unit increase	Affymetrix, Illumina [NR] (imputed)	N
651	chr20	8704551	8704552	rs6077414	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	20p12.3	NR	rs6077414-?	0.092	1E-6		1.466	[1.257-1.711] unit increase	Illumina [563945]	N
651	chr20	8729495	8729496	rs6039251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p12.3		rs6039251-?	NR	1E-8				NR [~ 8900000] (imputed)	N
651	chr20	8734262	8734263	rs2327101	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	PLCB4	rs2327101-?	NR	9E-6	(TAG 52:5)	0.3414504	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
651	chr20	8734262	8734263	rs2327101	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	PLCB4	rs2327101-?	NR	8E-6	(TAG 54:8)	0.34401792	[0.19-0.49] unit increase	Affymetrix [at least 2500000] (imputed)	N
652	chr20	8821099	8821100	rs7271421	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p12.3	NR	rs7271421-?	NR	6E-8		5.41	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
652	chr20	8831587	8831588	rs117019330	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	20p12.3	NR	rs117019330-?	NR	2E-6		7814.9805	NR unit decrease	Illumina [2379855]	N
652	chr20	8836770	8836771	rs6056209	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	20p12.3	PLCB1	rs6056209-?	0.4347	2E-6	(RVP)			Illumina [475971]	N
652	chr20	8865717	8865718	rs3761168	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	20p12.3	PLCB1	rs3761168-A	0.05	8E-8	(Age 17)	0.32	[0.2-0.44] unit increase	Illumina [2293137] (imputed)	N
652	chr20	8878249	8878250	rs2327121	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	20p12.3	NR	rs2327121-C	0.65709	1E-8		0.0181409	[0.012-0.024] unit increase	Affymetrix [16577424] (imputed)	N
652	chr20	8878280	8878281	rs67702392	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	20p12.3	PLCB1, RNU105B, PLCB4	rs67702392-C	NR	6E-7	(daytime napping, weekdays)	0.685	[0.42-0.95] unit decrease	Affymetrix [7141204] (imputed)	N
652	chr20	8881585	8881586	rs3848842	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	20p12.3		rs3848842-C	0.3239	9E-6		0.031491	[0.018-0.045] unit increase	Affymetrix [15580782] (imputed)	N
652	chr20	8881585	8881586	rs3848842	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	20p12.3		rs3848842-C	0.3239	3E-6		0.03364	[0.019-0.048] unit increase	Affymetrix [15580782] (imputed)	N
652	chr20	8895775	8895776	rs115205687	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20p12.3	NR	rs115205687-?	NR	1E-6		0.4923	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
652	chr20	8895775	8895776	rs115205687	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	20p12.3	NR	rs115205687-?	NR	4E-8		0.4891	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
653	chr20	8978062	8978063	rs6108228	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.3	PLCB1	rs6108228-?	NR	3E-6	(carnitine)	0.1752237	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
654	chr20	9047667	9047668	rs2327129	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.3	NR	rs2327129-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
654	chr20	9047667	9047668	rs2327129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.3		rs2327129-?	NR	3E-9				NR [~ 8900000] (imputed)	N
654	chr20	9146250	9146251	rs140751744	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	20p12.3	PLCB4	rs140751744-C	NR	6E-6		1.40963	[1.2154-1.63489]	Illumina [5842835] (imputed)	N
655	chr20	9296483	9296484	rs77987151	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	20p12.2		rs77987151-A	0.2594	1E-6		1.517	[1.28-1.797]	Affymetrix [7975321] (imputed)	N
656	chr20	9365302	9365303	rs2072910	20172861	Okada Y	2010-02-18	Hum Mol Genet	Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count.	Neutrophil count	5,771 Japanese ancestry individuals	1,894 Japanese ancestry individuals	20p12.2	PLCB4	rs2072910-C	0.30	3E-10		0.11	[0.07-0.15] unit decrease	Illumina [486091]	N
656	chr20	9412871	9412872	rs79252303	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.2	NR	rs79252303-T	0.0122	3E-9	(EIF2B1)	0.02387	NR unit increase	Illumina [1671387] (imputed)	N
656	chr20	9429343	9429344	rs2299682	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	20p12.2	PLCB4	rs2299682-?	NR	9E-8	(African)			Illumina [4404269] (imputed)	N
656	chr20	9429343	9429344	rs2299682	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	20p12.2	PLCB4	rs2299682-G	0.08993	4E-7	(African)			Illumina [4404269] (imputed)	N
657	chr20	9501525	9501526	rs2239382	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	20p12.2	C20orf103, PAK7	rs2239382-?	NR	7E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
658	chr20	9576619	9576620	rs6056732	28927820	Sugier PE	2017-09-16	J Allergy Clin Immunol	A novel role for ciliary function in atopy: ADGRV1 and DNAH5 interactions.	Atopy	925 European ancestry cases, 735 European ancestry controls	641 French Canadian (founder/population isolate) cases, 497 French Canadian (founder/population isolate) controls, 106 cases, 340 controls	20p12.2	PAK5	rs6056732-C	0.09	3E-6		1.6393442	[1.33-2.00]	Illumina [501167]	N
658	chr20	9586735	9586736	rs6056747	31271701	Thibord F	2019-07-04	J Thromb Haemost	A Genome Wide Association Study on plasma FV levels identified PLXDC2 as a new modifier of the coagulation process.	Plasma factor V levels in venous thrombosis (conditioned on rs6027)	510 European ancestry individuals	1,156 European ancestry individuals	20p12.2	PAK5	rs6056747-?	NR	2E-6		0.108	[0.063-0.153] unit decrease	NR [6264382] (imputed)	N
658	chr20	9631386	9631387	rs2224610	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20p12.2	NR	rs2224610-?	NR	3E-7	(Latino)	1.3171	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
658	chr20	9649073	9649074	rs2423401	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Hand grip strength (Mahalanobis distance)	4,608 European ancestry individuals	NA	20p12.2	PAK7	rs2423401-?	NR	1E-7				Illumina [1464300]	N
658	chr20	9656319	9656320	rs6118694	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20p12.2	NR	rs6118694-A	0.177	4E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
658	chr20	9685612	9685613	rs6108331	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	20p12.2	PAK7	rs6108331-T	NR	7E-7		0.13761948	[0.084-0.192] unit decrease	Illumina [> 6200000] (imputed)	N
658	chr20	9689550	9689551	rs6039555	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	20p12.2	PAK5	rs6039555-A	0.1414	9E-6		0.1146	[0.064-0.165] unit decrease	NR [NR] (imputed)	N
659	chr20	9762054	9762055	rs78653452	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	20p12.2	NR	rs78653452-G		1E-6		0.7362	[0.43-1.04] SD units increase	NR [10700000] (imputed)	N
659	chr20	9762447	9762448	rs6056869	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	20p12.2	PAK7	rs6056869-A	0.294	1E-6	(EA)	1.12	[1.07-1.17]	Illumina [up to 4778154] (imputed)	N
659	chr20	9778728	9778729	rs6056891	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.2	PAK7	rs6056891-G	0.268	8E-6	(Height z-score )	0.03	[NR] SD increase	Illumina [899892]	N
659	chr20	9805548	9805549	rs16996439	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.2	ANKRD5	rs16996439-?	NR	1E-6	(SM 14:0)	0.23565361	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
659	chr20	9815527	9815528	rs221013	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20p12.2	Intergenic	rs221013-T	0.3638	1E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
659	chr20	9816859	9816860	rs6056921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p12.2		rs6056921-G	NR	5E-8		0.0091	[0.0058-0.0124] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
660	chr20	9888274	9888275	rs1041536	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p12.2	PAK7, SNAP25-AS1	rs1041536-T	0.51	9E-7	(EA)	0.0977	[0.059-0.136] unit increase	Illumina [~ 9000000] (imputed)	N
660	chr20	9888274	9888275	rs1041536	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p12.2	PAK7, SNAP25-AS1	rs1041536-T	0.51	3E-7		0.0982	[0.061-0.135] unit increase	Illumina [~ 9000000] (imputed)	N
660	chr20	9940474	9940475	rs6039642	32047264	Cordova-Palomera A	2020-02-11	Mol Psychiatry	Genetic control of variability in subcortical and intracranial volumes.	Brain imaging measurements (variance)	25,575 European ancestry individuals	NA	20p12.2	SNAP25, PAK7, ANKEF1	rs6039642-A	0.17	2E-8	(mean cortical thickness variance)			NR [~ 5000000] (imputed)	N
660	chr20	9952117	9952118	rs80352176	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	20p12.2	RP5-839B4.8	rs80352176-G	0.09	2E-6		4.991	[2.96-7.03] unit decrease	Illumina [NR] (imputed)	N
661	chr20	9971407	9971408	rs116792	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	4,680 European ancestry individuals	3,566 European ancestry individuals	20p12.2		rs116792-G	0.428072626	5E-11				Illumina [7417619] (imputed)	N
661	chr20	9982923	9982924	rs140742043	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	20p12.2	RP5-839B4.8, ANKEF1	rs140742043-T	0.0033	4E-6		0.4583	[0.26-0.65] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
661	chr20	10079395	10079396	rs6039695	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	20p12.2	NR	rs6039695-A	0.34	1E-6		0.89	NR	Affymetrix, Illumina [6957974] (imputed)	N
662	chr20	10183516	10183517	rs6039763	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (etoposide)	54 Japanese ancestry cases, 39 Japanese ancestry controls	NA	20p12.2	LOC100131208	rs6039763-A	0.09	2E-6	(Dominant model)	5.966	[2.502-14.23]	Illumina [733202]	N
662	chr20	10206916	10206917	rs6077693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20p12.2		rs6077693-?	NR	4E-8				NR [NR]	N
662	chr20	10206916	10206917	rs6077693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20p12.2		rs6077693-?	NR	2E-8				NR [NR]	N
662	chr20	10206916	10206917	rs6077693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20p12.2		rs6077693-?	NR	2E-8				NR [NR]	N
662	chr20	10206916	10206917	rs6077693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20p12.2		rs6077693-?	NR	6E-10				NR [NR]	N
662	chr20	10206916	10206917	rs6077693	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20p12.2		rs6077693-?	NR	2E-8				NR [NR]	N
662	chr20	10211559	10211560	rs73899512	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	20p12.2	NR	rs73899512-?	NR	8E-6		0.4109	[0.24-0.59] unit decrease	Illumina [at least 560000] (imputed)	N
663	chr20	10271366	10271367	rs116940963	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	20p12.2	intergenic	rs116940963-G	0.007	2E-6		7.39	[2.82-19.36]	Illumina [1556551]	N
663	chr20	10277451	10277452	rs362987	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	20p12.2	intergenic	rs362987-A	0.522	8E-6		0.02	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
663	chr20	10324252	10324253	rs6108491	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised social anhedonia scale)	3,837 Finnish ancestry individuals	NA	20p12.2	SNAP25	rs6108491-?		3E-6				Illumina [~ 9600000] (imputed)	N
664	chr20	10366397	10366398	rs2327293	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	20p12.2	NR	rs2327293-G	0.2299	7E-6		1.846	[1.409-2.42]	Illumina [274400]	N
664	chr20	10434529	10434530	rs6131100	28548082	Southam L	2017-05-26	Nat Commun	Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.	Fasting blood glucose adjusted for BMI	up to 1,476 Mylopotamos (founder/genetic isolate) individuals, up to 1,737 Pomak (founder/genetic isolate) individuals	NA	20p12.2	SLX4IP	rs6131100-A	0.037	1E-8	(Pomak)	0.79	[0.52-1.06] unit decrease	Illumina [at least 13541454] (imputed)	N
664	chr20	10449172	10449173	rs562422957	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	20p12.2	SLX4IP	rs562422957-T	0.9985	5E-6		0.9966	[0.57-1.43] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
664	chr20	10458687	10458688	rs680515	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20p12.2	SLX4IP	rs680515-A	0.3861	7E-42		0.2437	[0.21-0.28] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
664	chr20	10481771	10481772	rs677673	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	20p12.2	C20orf94	rs677673-?		6E-6		0.092	[0.053-0.131] unit decrease	Affymetrix [418365]	N
665	chr20	10488552	10488552	rs3063286	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	20p12.2		rs3063286-T	0.465339	3E-8		0.0383469	[0.024-0.052] increase	Affymetrix [NR]	N
665	chr20	10488552	10488552	rs3063286	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p12.2	C20orf94	rs3063286-TTA	0.498	4E-16		0.201	[0.15-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
665	chr20	10503183	10503184	rs6040006	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6040006-?	NR	7E-39		0.0781561	[0.066-0.09] unit increase	Affymetrix [20259828] (imputed)	N
665	chr20	10503183	10503184	rs6040006	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	SLX4IP	rs6040006-C	0.970168	8E-14	(men)	0.113666	[0.084-0.144] unit increase	NR [17166351] (imputed)	N
665	chr20	10503183	10503184	rs6040006	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	SLX4IP	rs6040006-C	0.970095	9E-21		0.0934562	[0.074-0.113] unit increase	NR [17166351] (imputed)	N
665	chr20	10503183	10503184	rs6040006	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	SLX4IP	rs6040006-C	0.970032	3E-9	(women)	0.0779978	[0.051-0.105] unit increase	NR [17166351] (imputed)	N
665	chr20	10539930	10539931	rs674491	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p12.2	NR	rs674491-C	0.375202	5E-9		0.0185679	[0.012-0.025] unit increase	NR [19129689] (imputed)	N
665	chr20	10555405	10555406	rs856999	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	SLX4IP	rs856999-C	0.631746	2E-14		0.0157694	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
665	chr20	10555535	10555536	rs865643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p12.2	NR	rs865643-A	NR	4E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr20	10601744	10601745	rs117026974	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs117026974-?	NR	8E-21		0.0385805	[0.03-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
665	chr20	10609062	10609085	rs138072788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20p12.2		rs138072788-C	NR	3E-8		0.0102	[0.0067-0.0137] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
665	chr20	10611062	10611063	rs1232605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs1232605-G	0.417751	6E-14				Affymetrix, Illumina [24558453] (imputed)	N
665	chr20	10614294	10614295	rs2179687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p12.2		rs2179687-?	NR	2E-9				NR [~ 8900000] (imputed)	N
665	chr20	10614294	10614295	rs2179687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.2		rs2179687-?	NR	9E-8				NR [~ 8900000] (imputed)	N
666	chr20	10617155	10617156	rs2423508	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20p12.2		rs2423508-G	NR	2E-8		0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
666	chr20	10619013	10619014	rs7828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20p12.2		rs7828-C	NR	2E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
666	chr20	10619013	10619014	rs7828	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20p12.2	JAG1	rs7828-C	0.327069	5E-9		0.01383163	[0.0092-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10619013	10619014	rs7828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20p12.2	NR	rs7828-C	0.328073	3E-13		0.014442	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
666	chr20	10619013	10619014	rs7828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20p12.2	NR	rs7828-C	0.328341	2E-14		0.015162	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
666	chr20	10619013	10619014	rs7828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20p12.2		rs7828-?	NR	8E-9				NR [~ 8900000] (imputed)	N
666	chr20	10621172	10621173	rs79656997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20p12.2		rs79656997-A	NR	1E-8		0.0318	[0.021-0.043] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
666	chr20	10624189	10624190	rs889509	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p12.2	JAG1	rs889509-A	0.5827	2E-12		0.0136	[0.0099-0.0173] unit increase	Affymetrix [18391927] (imputed)	N
666	chr20	10629524	10629525	rs35308216	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	JAG1	rs35308216-T	0.91911	1E-37		0.0463014	[0.039-0.053] unit increase	NR [13737936] (imputed)	N
666	chr20	10629524	10629525	rs35308216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs35308216-?	NR	8E-72				NR [~ 8900000] (imputed)	N
666	chr20	10629524	10629525	rs35308216	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs35308216-?	NR	5E-75		0.0667042	[0.059-0.074] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10629871	10629872	rs6108653	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6108653-?	NR	2E-38		0.0519128	[0.044-0.06] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10634674	10634675	rs78438678	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	JAG1	rs78438678-C	0.922036	2E-13		0.0282778	[0.021-0.036] unit increase	NR [13737936] (imputed)	N
666	chr20	10638385	10638386	rs12625256	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20p12.2	JAG1	rs12625256-A	0.5936	2E-9		0.0191	[0.013-0.025] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
666	chr20	10639542	10639543	rs2273061	20096396	Kung AW	2010-01-20	Am J Hum Genet	Association of JAG1 with bone mineral density and osteoporotic fractures: a genome-wide association study and follow-up replication studies.	Bone mineral density	785 Han Chinese ancestry extreme high and low BMD female individuals	264 Han Chinese ancestry High BMD individuals, 456 Han Chinese ancestry Low BMD individuals, 3,465 Han Chinese ancestry individuals, 13,913 European ancestry individuals	20p12.2	JAG1	rs2273061-A	0.31	5E-8	(lumbar spine)	0.07	[NR] s.d. increase	Illumina [488853]	N
666	chr20	10639987	10639988	rs3790160	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	20p12.2	JAG1	rs3790160-T	0.5	3E-19		0.05	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
666	chr20	10640041	10640042	rs17457340	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs17457340-?	NR	1E-87		0.0745052	[0.067-0.082] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10640041	10640042	rs17457340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs17457340-T	0.923972	7E-10	(men)	0.0596668	[0.041-0.079] unit increase	NR [17166351] (imputed)	N
666	chr20	10640041	10640042	rs17457340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs17457340-T	0.923182	2E-25		0.0640951	[0.052-0.077] unit increase	NR [17166351] (imputed)	N
666	chr20	10640041	10640042	rs17457340	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs17457340-T	0.922493	5E-15	(women)	0.0675019	[0.05-0.085] unit increase	NR [17166351] (imputed)	N
666	chr20	10640200	10640201	rs6040060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20p12.2		rs6040060-G	NR	2E-10		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
666	chr20	10640200	10640201	rs6040060	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	20p12.2	NR	rs6040060-G	NR	1E-10		0.0175	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr20	10640200	10640201	rs6040060	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20p12.2	NR	rs6040060-A	0.28	1E-11		0.0148	[0.01-0.019] unit increase	NR [NR]	N
666	chr20	10640876	10640877	rs6040063	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	20p12.2	NR	rs6040063-A	0.5079	8E-11	(European)	0.0401	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
666	chr20	10640876	10640877	rs6040063	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	20p12.2	NR	rs6040063-A	0.5007	2E-10		0.0359	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
666	chr20	10643849	10643850	rs7267595	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20p12.2	JAG1	rs7267595-A	0.5097	3E-9		0.022524	[0.015-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
666	chr20	10643849	10643850	rs7267595	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	JAG1	rs7267595-A	0.528528	9E-27		0.0223007	[0.018-0.026] unit increase	NR [13737936] (imputed)	N
666	chr20	10644983	10644984	rs6040068	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6040068-?	NR	2E-21		0.0295046	[0.023-0.036] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10644983	10644984	rs6040068	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs6040068-C	0.87363	7E-8	(men)	0.0393061	[0.024-0.055] unit increase	NR [17166351] (imputed)	N
666	chr20	10644983	10644984	rs6040068	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs6040068-C	0.873263	1E-12		0.0354183	[0.025-0.046] unit increase	NR [17166351] (imputed)	N
666	chr20	10644983	10644984	rs6040068	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	JAG1	rs6040068-C	0.872942	1E-7	(women)	0.0326977	[0.019-0.047] unit increase	NR [17166351] (imputed)	N
666	chr20	10646670	10646671	rs1997814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p12.2	JAG1	rs1997814-G	0.682173	2E-10		0.016144482	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10646670	10646671	rs1997814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p12.2	JAG1	rs1997814-G	0.682162	4E-9		0.01495677	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10646670	10646671	rs1997814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p12.2	JAG1	rs1997814-G	0.682161	8E-10		0.015670286	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10646670	10646671	rs1997814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20p12.2	NR	rs1997814-G	0.68376	9E-11		0.013452	[0.0094-0.0175] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
666	chr20	10646670	10646671	rs1997814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p12.2		rs1997814-?	NR	5E-11				NR [~ 8900000] (imputed)	N
666	chr20	10647678	10647679	rs1883801	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p12.2		rs1883801-G	0.19	3E-9		5.95	z score increase	Affymetrix [9061022] (imputed)	N
666	chr20	10647678	10647679	rs1883801	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p12.2	NR	rs1883801-G	0.1857	1E-10				NR [9056863] (imputed)	N
666	chr20	10647678	10647679	rs1883801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20p12.2		rs1883801-?	NR	9E-9				NR [~ 8900000] (imputed)	N
666	chr20	10647950	10647951	rs3790163	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	20p12.2	JAG1	rs3790163-G	NR	5E-8	(male)	0.954	[0.94-0.97]	Affymetrix [9869154] (imputed)	N
666	chr20	10647950	10647951	rs3790163	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs3790163-?	NR	2E-47		0.0380113	[0.033-0.043] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10649319	10649320	rs143614067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20p12.2		rs143614067-G	NR	2E-8		0.0167	[0.011-0.023] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
666	chr20	10649319	10649320	rs143614067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20p12.2	JAG1	rs143614067-G	0.212111	5E-12		0.019172754	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10649677	10649677	rs549768142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	20p12.2		rs549768142-GAAAAAAAAAAT	NR	4E-11		0.0849	[0.06-0.11] unit decrease	Affymetrix, Illumina [25845331] (imputed)	N
666	chr20	10649677	10649677	rs549768142	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	20p12.2	NR	rs549768142-GAAAAAAAAAAT	NR	9E-15		0.9327		Affymetrix [9869154] (imputed)	N
666	chr20	10649677	10649677	rs549768142	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	20p12.2	JAG1	rs549768142-GAAAAAAAAAAT	NR	3E-17		0.96	[0.95-0.97]	Affymetrix [9869154] (imputed)	N
666	chr20	10649760	10649761	rs6077868	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.2		rs6077868-T	0.21	5E-18		8.65	z score increase	Affymetrix [9061022] (imputed)	N
666	chr20	10649760	10649761	rs6077868	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p12.2		rs6077868-T	0.21	5E-13		7.23	z score increase	Affymetrix [9061022] (imputed)	N
666	chr20	10649760	10649761	rs6077868	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p12.2	NR	rs6077868-T	0.2007	1E-11				NR [9056863] (imputed)	N
666	chr20	10649760	10649761	rs6077868	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	20p12.2		rs6077868-?	NR	3E-9				NR [9705931] (imputed)	N
666	chr20	10649760	10649761	rs6077868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20p12.2	JAG1	rs6077868-T	0.205736	2E-9		0.016686855	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
666	chr20	10649760	10649761	rs6077868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs6077868-T	0.191079	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
666	chr20	10649760	10649761	rs6077868	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	20p12.2	NR	rs6077868-?		7E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
666	chr20	10649760	10649761	rs6077868	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	20p12.2	NR	rs6077868-?		4E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
666	chr20	10650353	10650354	rs6133987	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	20p12.2	FOXP1	rs6133987-?		5E-12				NR [7428630] (imputed)	N
666	chr20	10650353	10650354	rs6133987	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20p12.2	NR	rs6133987-?		3E-19				NR [7428630] (imputed)	N
666	chr20	10650353	10650354	rs6133987	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	20p12.2	SRD5A3, TMEM165, CLOCK, PDCL2, NMU	rs6133987-?		1E-11				NR [7428630] (imputed)	N
666	chr20	10650353	10650354	rs6133987	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20p12.2	JAG1	rs6133987-?		3E-18				NR [7428630] (imputed)	N
666	chr20	10650509	10650510	rs6077869	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	20p12.2	NR	rs6077869-?		2E-9	(Cingulate gyrus)			NR [8955960] (imputed)	N
666	chr20	10658881	10658882	rs6040076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20p12.2		rs6040076-C	NR	2E-43		0.0254	[0.022-0.029] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
666	chr20	10658881	10658882	rs6040076	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	20p12.2	JAG1	rs6040076-C	0.504257	2E-6		0.015037	[0.0088-0.0212] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
666	chr20	10658881	10658882	rs6040076	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20p12.2	JAG1	rs6040076-C	0.500114	4E-13		0.019018	[0.014-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
666	chr20	10658881	10658882	rs6040076	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20p12.2	intergenic	rs6040076-C	0.488	9E-18		0.285	[0.22-0.35] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
666	chr20	10658881	10658882	rs6040076	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20p12.2	intergenic	rs6040076-C	0.488	1E-7	(EA, initial)	0.262	[0.17-0.36] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
666	chr20	10658881	10658882	rs6040076	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	20p12.2	JAG1	rs6040076-C	0.51	7E-9		0.0218	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
666	chr20	10660062	10660063	rs6040079	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	20p12.2	JAG1	rs6040079-T	0.388241	6E-9		0.0479	[0.032-0.064] unit decrease	Affymetrix, Illumina [7998108] (imputed)	N
666	chr20	10669187	10669188	rs2206815	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	20p12.2	NR	rs2206815-A	0.49	4E-8		0.02092358	[0.013-0.028] unit increase	NR [1977400] (imputed)	N
666	chr20	10669187	10669188	rs2206815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p12.2		rs2206815-?	NR	2E-25				NR [~ 8900000] (imputed)	N
666	chr20	10669187	10669188	rs2206815	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p12.2	intergenic	rs2206815-C	0.5296	6E-36		0.3212	[0.27-0.37] mmHg decrease	Affymetrix [NR] (imputed)	N
666	chr20	10669187	10669188	rs2206815	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20p12.2	JAG1	rs2206815-A	0.5	5E-25		0.326	[0.27-0.38] unit decrease	Affymetrix [~ 9800000] (imputed)	N
666	chr20	10682862	10682863	rs6134000	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs6134000-G	0.438645	2E-9		0.013337206	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10683470	10683471	rs2057053	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs2057053-T	0.42399	4E-11				Affymetrix, Illumina [24332387] (imputed)	N
666	chr20	10683665	10683666	rs2057052	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	20p12.2	JAG1, LOC101929395	rs2057052-A	0.158	1E-8		1.078268	[1.050538-1.10673]	Affymetrix [NR] (imputed)	N
666	chr20	10684158	10684159	rs111404218	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	20p12.2	JAG1	rs111404218-G	0.34	2E-9		1.05	[1.03-1.07]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
666	chr20	10699761	10699762	rs35722701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs35722701-G	0.083696	2E-15		0.031813998	[0.024-0.04] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10699761	10699762	rs35722701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs35722701-G	0.083699	5E-16		0.032605283	[0.025-0.04] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10699761	10699762	rs35722701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs35722701-G	0.08372	5E-13		0.029141508	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10699761	10699762	rs35722701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs35722701-G	0.0837210000000001	2E-13		0.029790686	[0.022-0.038] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10712502	10712503	rs16991915	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA1375 sp002305795 abundance in stool	5,959 Finnish ancestry individuals	NA	20p12.2		rs16991915-A	0.0108842	3E-8		0.211757	[0.14-0.29] unit increase	Illumina [7980478] (imputed)	N
666	chr20	10719143	10719144	rs79349787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs79349787-C	0.073375	2E-19		0.038472444	[0.03-0.047] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10719143	10719144	rs79349787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs79349787-C	0.073366	9E-23		0.04201292	[0.034-0.05] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10719306	10719307	rs78358631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs78358631-T	0.074063	2E-9		0.025294116	[0.017-0.034] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10719306	10719307	rs78358631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs78358631-T	0.074114	2E-10		0.028323943	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10719306	10719307	rs78358631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20p12.2	NR	rs78358631-T	0.073062	4E-10		0.023188	[0.016-0.03] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
666	chr20	10719306	10719307	rs78358631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20p12.2		rs78358631-?	NR	2E-9				NR [~ 8900000] (imputed)	N
666	chr20	10719778	10719779	rs6040116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20p12.2	RP11-103J8.1	rs6040116-T	0.0736	9E-11		0.04449755	[0.031-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr20	10719778	10719779	rs6040116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20p12.2	RP11-103J8.1	rs6040116-T	0.0736	2E-12		0.04836676	[0.035-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr20	10719778	10719779	rs6040116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20p12.2	RP11-103J8.1	rs6040116-T	0.0736	6E-12		0.04727759	[0.034-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr20	10719778	10719779	rs6040116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20p12.2	RP11-103J8.1	rs6040116-T	0.0736	2E-13		0.05054218	[0.037-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
666	chr20	10726659	10726660	rs80139154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs80139154-C	0.073375	4E-17		0.037460085	[0.029-0.046] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10726659	10726660	rs80139154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs80139154-C	0.073371	4E-19		0.03978305	[0.031-0.049] unit increase	Affymetrix [93095623] (imputed)	N
666	chr20	10726659	10726660	rs80139154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs80139154-C	0.0631369	3E-10				Affymetrix, Illumina [23114412] (imputed)	N
666	chr20	10726659	10726660	rs80139154	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20p12.2	JAG1	rs80139154-C	0.073490382	8E-8		0.2957	[0.19-0.4] unit increase	Affymetrix [~ 9800000] (imputed)	N
666	chr20	10728298	10728299	rs6077899	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (spine)	2,286 European ancestry individuals	NA	20p12.2	JAG1	rs6077899-?	NR	6E-7				Affymetrix [753382]	N
666	chr20	10741174	10741175	rs6134023	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6134023-?	NR	9E-55		0.0369697	[0.032-0.042] unit increase	Affymetrix [20259828] (imputed)	N
666	chr20	10745544	10745545	rs6032942	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	20p12.2	LOC101929395	rs6032942-C	0.2325	4E-9		0.0176	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
666	chr20	10745544	10745545	rs6032942	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20p12.2	LOC101929395	rs6032942-C	0.2325	5E-16		0.0227	[0.017-0.028] unit increase	Affymetrix [19819130] (imputed)	N
666	chr20	10745544	10745545	rs6032942	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20p12.2	LOC101929395	rs6032942-C	0.2325	3E-10		0.0173	[0.012-0.023] unit increase	Affymetrix [19819130] (imputed)	N
667	chr20	10752609	10752610	rs6134031	28828242	Dajani R	2017-08-17	PeerJ	Genome-wide association study identifies novel type II diabetes risk loci in Jordan subpopulations.	Type 2 diabetes	67 Greater Middle Eastern ancestry cases, 214 Greater Middle Eastern ancestry controls	1,952 European ancestry cases, 2,960 European ancestry controls	20p12.2	JAG1	rs6134031-T	0.23	1E-8	(Greater Middle Eastern)	9.66	[NR]	Illumina [645000]	N
667	chr20	10752609	10752610	rs6134031	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	20p12.2	NR	rs6134031-T	0.1284	4E-6		0.0372	[0.022-0.053] unit increase	Illumina [up to 1980188] (imputed)	N
667	chr20	10756513	10756514	rs6032946	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LINC01752	rs6032946-C	0.77246	4E-10		0.014542	[0.01-0.0191] unit increase	NR [13737936] (imputed)	N
667	chr20	10761429	10761430	rs751859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p12.2		rs751859-?	NR	2E-21				NR [~ 8900000] (imputed)	N
667	chr20	10765985	10765986	rs6134038	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LINC01752	rs6134038-A	0.799975	3E-30		0.0280056	[0.023-0.033] unit increase	NR [13737936] (imputed)	N
667	chr20	10765985	10765986	rs6134038	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6134038-?	NR	2E-48		0.0364005	[0.031-0.042] unit increase	Affymetrix [20259828] (imputed)	N
667	chr20	10765985	10765986	rs6134038	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LINC01752	rs6134038-A	0.797495	5E-12	(women)	0.0380093	[0.027-0.049] unit increase	NR [17166351] (imputed)	N
667	chr20	10765985	10765986	rs6134038	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LINC01752	rs6134038-A	0.796218	4E-20		0.0375287	[0.029-0.046] unit increase	NR [17166351] (imputed)	N
667	chr20	10765985	10765986	rs6134038	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LINC01752	rs6134038-A	0.794755	3E-10	(men)	0.0383519	[0.026-0.051] unit increase	NR [17166351] (imputed)	N
667	chr20	10767810	10767811	rs1040922	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20p12.2	JAG1	rs1040922-T	0.28	4E-16		0.245	[0.19-0.3] unit decrease	Affymetrix [~ 9800000] (imputed)	N
667	chr20	10791838	10791839	rs6514131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs6514131-?	NR	7E-23				NR [~ 8900000] (imputed)	N
667	chr20	10823505	10823506	rs6134049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.2		rs6134049-?	NR	3E-12				NR [~ 8900000] (imputed)	N
667	chr20	10850463	10850464	rs1884136	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	20p12.2	RP4-697P8.2	rs1884136-T	0.09	9E-6	(inspection time)	0.2	[0.10-0.30] unit increase	Illumina [~ 610000]	N
667	chr20	10854988	10854989	rs534222792	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs534222792-?	NR	2E-17		0.0953361	[0.073-0.118] unit decrease	Affymetrix [20259828] (imputed)	N
667	chr20	10862432	10862433	rs4813038	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20p12.2	NR	rs4813038-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
668	chr20	10883484	10883485	rs6074197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20p12.2	RP11-103J8.1, RP4-697P8.3	rs6074197-G	NR	4E-8		0.0167256	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
668	chr20	10883484	10883485	rs6074197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20p12.2		rs6074197-?	NR	1E-9				NR [~ 8900000] (imputed)	N
668	chr20	10885444	10885445	rs764213	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs764213-?	NR	4E-27		0.0232598	[0.019-0.027] unit increase	Affymetrix [20259828] (imputed)	N
668	chr20	10891797	10891798	rs2144184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs2144184-?	NR	5E-13				NR [~ 8900000] (imputed)	N
668	chr20	10898333	10898334	rs6077955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.2		rs6077955-A	NR	8E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
668	chr20	10900207	10900208	rs6074203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs6074203-C	0.213305	1E-9		0.01674573	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
668	chr20	10902770	10902771	rs6108746	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	20p12.2	JAG1	rs6108746-C	0.22	7E-7		3.24	[1.96-4.52] unit increase	Illumina [7033776] (imputed)	N
668	chr20	10902770	10902771	rs6108746	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia (age at onset)	382 European ancestry GRN mutation carrier individuals	67 European ancestry GRN mutation carrier individuals, 143 European ancestry GRN negative individuals	20p12.2	JAG1	rs6108746-C	0.25	3E-7		3.19	unit increase	Illumina [7033776] (imputed)	N
668	chr20	10948550	10948551	rs6134088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.2		rs6134088-?	NR	3E-14				NR [~ 8900000] (imputed)	N
668	chr20	10948825	10948825	rs141255858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20p12.2		rs141255858-GA	NR	6E-10		0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
668	chr20	10961934	10961935	rs62185668	24861552	Rafnar T	2014-05-26	Hum Mol Genet	Genome-wide association study yields variants at 20p12.2 that associate with urinary bladder cancer.	Urinary bladder cancer	1,670 European ancestry cases, 90,180 European ancestry controls	5,241 European ancestry cases, 10,456 European ancestry controls	20p12.2	JAG1	rs62185668-A	0.236	2E-11		1.19	[1.13-1.26]	Illumina [34200000] (imputed)	N
668	chr20	10962184	10962185	rs4260308	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20p12.2	C20orf187, LOC339593	rs4260308-A	0.37	1E-20	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10964365	10964366	rs6108784	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	20p12.2	C20orf187	rs6108784-T	0.586	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix [11535925] (imputed)	N
668	chr20	10965997	10965998	rs1887320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20p12.2		rs1887320-A	NR	6E-16		0.0463	[0.035-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
668	chr20	10965997	10965998	rs1887320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20p12.2		rs1887320-A	NR	5E-19		0.0436	[0.034-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
668	chr20	10965997	10965998	rs1887320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20p12.2		rs1887320-A	NR	7E-26		0.02	[0.016-0.024] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
668	chr20	10965997	10965998	rs1887320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20p12.2		rs1887320-A	NR	8E-27		0.0211	[0.017-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
668	chr20	10965997	10965998	rs1887320	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20p12.2	C20orf187	rs1887320-A	0.476625	4E-16		0.04932532	[0.037-0.061] unit increase	Affymetrix [7288503] (imputed)	N
668	chr20	10965997	10965998	rs1887320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20p12.2		rs1887320-?	NR	1E-25				NR [~ 8900000] (imputed)	N
668	chr20	10965997	10965998	rs1887320	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p12.2	intergenic	rs1887320-A	0.4655	6E-22		0.3107	[0.25-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
668	chr20	10965997	10965998	rs1887320	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1887320-A	0.485	7E-10	(East Asian)	0.2711	[0.19-0.36] unit increase	Illumina [6200000] (imputed)	N
668	chr20	10965997	10965998	rs1887320	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1887320-A	0.485	1E-6	(Japanese)	0.0625	[0.037-0.088] unit increase	Illumina [6200000] (imputed)	N
668	chr20	10965997	10965998	rs1887320	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1887320-A	0.485	1E-10	(East Asian)	0.2525	[0.18-0.33] unit increase	Illumina [6200000] (imputed)	N
668	chr20	10965997	10965998	rs1887320	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	20p12.2	C20orf187, LOC339593	rs1887320-A	0.46	2E-9	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10965997	10965998	rs1887320	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	20p12.2	intergenic	rs1887320-A	0.465160943831609	2E-11		0.3072451	[0.22-0.4] unit increase	Illumina [247039]	N
668	chr20	10965997	10965998	rs1887320	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	20p12.2	JAG1	rs1887320-A	0.4595	5E-16		0.0261	unit increase	Illumina [242296]	N
668	chr20	10965997	10965998	rs1887320	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	20p12.2	JAG1	rs1887320-A	0.53	1E-8		0.78	[0.51-1.05] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
668	chr20	10965997	10965998	rs1887320	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	20p12.2	JAG1	rs1887320-A	0.53	2E-8		0.43	[0.27-0.59] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
668	chr20	10966333	10966334	rs6077991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20p12.2		rs6077991-T	NR	4E-19		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
668	chr20	10967213	10967214	rs6108787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20p12.2		rs6108787-G	NR	9E-9		0.0363	[0.024-0.049] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
668	chr20	10967213	10967214	rs6108787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	20p12.2		rs6108787-G	NR	4E-10		0.0412	[0.028-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
668	chr20	10967213	10967214	rs6108787	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20p12.2	C20orf187	rs6108787-G	0.475926	1E-14		0.060976766	[0.046-0.076] unit increase	Affymetrix [7288503] (imputed)	N
668	chr20	10967213	10967214	rs6108787	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	20p12.2	C20orf187	rs6108787-G	0.475612	2E-9		0.0493109	[0.033-0.065] unit increase	Affymetrix [7288503] (imputed)	N
668	chr20	10967213	10967214	rs6108787	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20p12.2		rs6108787-?	NR	3E-35				NR [~ 8900000] (imputed)	N
668	chr20	10967213	10967214	rs6108787	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	20p12.2	C20orf187, LOC339593	rs6108787-T	0.53	9E-19	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10967213	10967214	rs6108787	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20p12.2	C20orf187, LOC339593	rs6108787-T	0.53	8E-18	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10967213	10967214	rs6108787	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	20p12.2	C20orf187, LOC339593	rs6108787-T	0.54	9E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10967213	10967214	rs6108787	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20p12.2	C20orf187, LOC339593	rs6108787-T	0.53	2E-25	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10967213	10967214	rs6108787	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	20p12.2	C20orf187, LOC339593	rs6108787-T	0.54	7E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	NR	rs6108787-T		5E-11		0.354	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	NR	rs6108787-T		2E-8	(EA)	0.334	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p12.2	NR	rs6108787-T		3E-17		0.322	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	NR	rs6108787-T		2E-10		0.223	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	NR	rs6108787-T		1E-7	(EA)	0.205	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10967213	10967214	rs6108787	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p12.2	NR	rs6108787-T		2E-21		0.223	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	20p12.2	NR	rs1327235-?	NR	3E-12		0.0426419	NR unit decrease	Affymetrix [464137]	N
668	chr20	10969029	10969030	rs1327235	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1327235-A	0.5068	9E-8	(Japanese)	0.2826	[0.18-0.39] unit decrease	Illumina [6200000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1327235-A	0.5068	3E-6	(Japanese)	0.0608	[0.036-0.086] unit decrease	Illumina [6200000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20p12.2	C20orf187	rs1327235-A	0.5068	1E-8	(Japanese)	0.2736	[0.18-0.37] unit decrease	Illumina [6200000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	20p12.2	JAG1	rs1327235-?	NR	4E-22				Affymetrix, Illumina [18800000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	20p12.2	JAG1	rs1327235-?		3E-36				Affymetrix, Illumina [18800000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20p12.2	JAG1	rs1327235-G	0.458	9E-7	(EA, initial)	0.349	[0.21-0.49] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
668	chr20	10969029	10969030	rs1327235	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20p12.2	JAG1	rs1327235-G	0.458	1E-7	(EA, initial)	0.229	[0.14-0.31] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		6E-11		0.352	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		2E-8	(EA)	0.334	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		4E-17		0.319	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		3E-10		0.22	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		1E-7	(EA)	0.204	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p12.2	JAG1, LOC339593	rs1327235-A		1E-21		0.221	unit decrease	Affymetrix [at least 2696785] (imputed)	N
668	chr20	10969029	10969030	rs1327235	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	20p12.2	JAG1	rs1327235-A	0.542	2E-11		0.395	[0.28-0.51] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
668	chr20	10969029	10969030	rs1327235	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	20p12.2	JAG1	rs1327235-A	0.542	2E-17		0.308	[0.24-0.38] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
668	chr20	10969029	10969030	rs1327235	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	20p12.2	JAG1	rs1327235-A	0.531	1E-6	(EA)	0.4209	[0.25-0.59] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	26390057	Kato N	2015-09-21	Nat Genet	Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation.	Diastolic blood pressure	31,516 East Asian ancestry individuals,  35,352 European ancestry individuals, 33,126 South Asian ancestry individuals	87,205 individuals, 48,268 East Asian ancestry individuals, 68,456 European ancestry individuals, 16,328 South Asian ancestry individuals	20p12.2	JAG1	rs1327235-A	0.5115	6E-8		0.2799	[0.18-0.38] mmHg decrease	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20p12.2	JAG1	rs1327235-G	0.46	2E-8		0.34	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20p12.2	JAG1	rs1327235-G	0.46	1E-15		0.302	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
668	chr20	10969029	10969030	rs1327235	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20p12.2	JAG1	rs1327235-G	0.58	4E-8	(Mean Arterial Pressure)	0.259	[0.17-0.35] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
668	chr20	10974784	10974785	rs6108789	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20p12.2	RP11-103J8.1	rs6108789-G	0.518873	4E-10		0.013892439	[0.0095-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
668	chr20	10975284	10975285	rs6077999	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC101929413	rs6077999-A	0.7308	6E-11		0.0150762	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
668	chr20	10976953	10976954	rs1409864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20p12.2		rs1409864-G	NR	3E-9		0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
668	chr20	10979009	10979010	rs6078002	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20p12.2	C20orf187	rs6078002-A	0.289318	1E-16		0.07339079	[0.056-0.091] unit increase	Affymetrix [7288503] (imputed)	N
668	chr20	10979088	10979089	rs6108796	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC101929413	rs6108796-G	0.708818	2E-57		0.0362581	[0.032-0.041] unit decrease	NR [13737936] (imputed)	N
668	chr20	10984359	10984360	rs6040283	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6040283-?	NR	8E-89		0.0441468	[0.04-0.049] unit decrease	Affymetrix [20259828] (imputed)	N
668	chr20	10985142	10985143	rs6040286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs6040286-?	NR	1E-80				NR [~ 8900000] (imputed)	N
668	chr20	10985802	10985803	rs1980854	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs1980854-?	NR	4E-78		0.0427476	[0.038-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
668	chr20	10985802	10985803	rs1980854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC101929413	rs1980854-G	0.713417	4E-15	(men)	0.0413046	[0.03-0.052] unit decrease	NR [17166351] (imputed)	N
668	chr20	10985802	10985803	rs1980854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC101929413	rs1980854-G	0.712095	2E-28		0.0392164	[0.032-0.047] unit decrease	NR [17166351] (imputed)	N
668	chr20	10985802	10985803	rs1980854	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC101929413	rs1980854-G	0.71094	4E-15	(women)	0.0392956	[0.029-0.049] unit decrease	NR [17166351] (imputed)	N
668	chr20	10988098	10988099	rs6104690	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	20p12.2	C20orf187, LOC339593	rs6104690-A	0.56	7E-7		1.1236	[1.08-1.18]	Illumina [462190]	N
668	chr20	10989518	10989519	rs6108801	26861389	D'Adamo CR	2016-02-06	Nutrients	A Common Variant in the SETD7 Gene Predicts Serum Lycopene Concentrations.	Serum lycopene concentrations	441 Old Order Amish individuals from 308 families	NA	20p12.2	intergenic	rs6108801-C	0.04	4E-7		0.48	[0.30-0.66] ug/dL decrease	Affymetrix [2302013] (imputed)	N
668	chr20	10996910	10996911	rs6104691	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	20p12.2	C20orf187	rs6104691-A	0.34	1E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
669	chr20	11021642	11021643	rs7270518	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC101929413	rs7270518-A	0.951156	4E-14		0.0323026	[0.024-0.041] unit decrease	NR [13737936] (imputed)	N
669	chr20	11021642	11021643	rs7270518	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs7270518-?	NR	3E-14		0.0376754	[0.028-0.047] unit decrease	Affymetrix [20259828] (imputed)	N
669	chr20	11060924	11060925	rs77790871	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	20p12.2	JAG1	rs77790871-A	0.01590338	6E-8		1.1584	[0.74-1.58] unit increase	Affymetrix [~ 9800000] (imputed)	N
669	chr20	11079738	11079739	rs4813047	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20p12.2	LOC339593	rs4813047-A	0.191669	1E-7		0.017533	[0.011-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
669	chr20	11091188	11091189	rs6040356	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6040356-?	NR	6E-16		0.0174293	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
670	chr20	11150593	11150594	rs34778574	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	20p12.2	NR	rs34778574-T		2E-15		0.31	[0.23-0.39] unit increase	NR [NR]	N
670	chr20	11150593	11150594	rs34778574	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC339593	rs34778574-T	0.96131	2E-60		0.0816963	[0.072-0.091] unit increase	NR [13737936] (imputed)	N
670	chr20	11150593	11150594	rs34778574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20p12.2		rs34778574-?	NR	3E-9				NR [~ 8900000] (imputed)	N
670	chr20	11150593	11150594	rs34778574	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	20p12.2	BTBD3	rs34778574-T	0.961	4E-16		0.295	[0.22-0.37] unit increase	Affymetrix, Illumina [NR] (imputed)	N
670	chr20	11150593	11150594	rs34778574	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20p12.2	C20orf187, LOC339593	rs34778574-T	0.9612	2E-15		0.289	[0.22-0.36] unit increase	Affymetrix [~ 11900000] (imputed)	N
670	chr20	11157010	11157011	rs6040399	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	20p12.2	intergenic	rs6040399-T	NR	1E-6	(AA - Dizziness)			Affymetrix [421789]	N
670	chr20	11157010	11157011	rs6040399	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	20p12.2	intergenic	rs6040399-T	0.308	7E-7	(EA + AA - Dizziness)			Affymetrix [421789]	N
670	chr20	11165851	11165852	rs6078091	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p12.2	NR	rs6078091-?	NR	5E-24				Affymetrix [NR]	N
670	chr20	11174902	11174903	rs2207418	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	20p12.2	C20orf94, BTBD3, SNAP25, MKK5, JAG1	rs2207418-?	NR	9E-6	(dominant)			Affymetrix [361034]	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20p12.2	NR	rs34952318-A	0.049084	4E-11		0.03433217	[0.024-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.2		rs34952318-A	0.0490660000000001	4E-17		0.04438275	[0.034-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p12.2		rs34952318-A	0.049078	3E-14		0.04011339	[0.03-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20p12.2		rs34952318-A	0.04907	5E-13		0.037494503	[0.027-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20p12.2		rs34952318-A	0.049108	7E-10		0.031921104	[0.022-0.042] unit increase	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20p12.2		rs34952318-A	0.049104	7E-9		0.030005751	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.0413613	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.050283	4E-14		0.033097	[0.025-0.042] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.0414277	3E-13				Affymetrix, Illumina [24588908] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.050335	1E-15		0.035	[0.026-0.044] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.0434733	4E-15				Affymetrix, Illumina [23472807] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.050122	1E-14		0.034653	[0.026-0.043] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.0414811	7E-14				Affymetrix, Illumina [24653286] (imputed)	N
670	chr20	11177054	11177055	rs34952318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20p12.2	NR	rs34952318-A	0.050308	8E-16		0.035365	[0.027-0.044] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
670	chr20	11177054	11177055	rs34952318	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	20p12.2	LOC339593	rs34952318-G	0.95	1E-16				Affymetrix, Illumina [8002429] (imputed)	N
670	chr20	11177054	11177055	rs34952318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.2		rs34952318-?	NR	3E-12				NR [~ 8900000] (imputed)	N
670	chr20	11177054	11177055	rs34952318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs34952318-?	NR	6E-62				NR [~ 8900000] (imputed)	N
670	chr20	11177054	11177055	rs34952318	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	20p12.2	LOC339593	rs34952318-?	NR	1E-16		0.2656	[0.2-0.33] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
670	chr20	11177054	11177055	rs34952318	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs34952318-?	NR	3E-59		0.076921	[0.067-0.086] unit increase	Affymetrix [20259828] (imputed)	N
670	chr20	11177054	11177055	rs34952318	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC339593	rs34952318-G	0.951265	6E-17	(men)	0.0994816	[0.076-0.123] unit increase	NR [17166351] (imputed)	N
670	chr20	11177054	11177055	rs34952318	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC339593	rs34952318-G	0.950943	3E-22		0.0741739	[0.059-0.09] unit increase	NR [17166351] (imputed)	N
670	chr20	11177054	11177055	rs34952318	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20p12.2	LOC339593	rs34952318-G	0.950662	3E-7	(women)	0.0554227	[0.034-0.077] unit increase	NR [17166351] (imputed)	N
670	chr20	11180867	11180868	rs16992291	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	20p12.2	NR	rs16992291-A	0.072	4E-6		0.2394	[0.14-0.34] unit increase	Illumina [up to 730525]	N
670	chr20	11191560	11191561	rs139326808	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC339593	rs139326808-G	0.988669	3E-18		0.0748522	[0.058-0.092] unit increase	NR [13737936] (imputed)	N
670	chr20	11197255	11197256	rs6033058	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p12.2	NR	rs6033058-G	0.368532	4E-10		0.0203665	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
670	chr20	11204882	11204883	rs2223853	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC339593	rs2223853-A	0.364662	2E-11		0.0135887	[0.0096-0.0175] unit increase	NR [13737936] (imputed)	N
670	chr20	11207418	11207419	rs6033062	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20p12.2	LOC339593	rs6033062-A	0.460185	5E-10		0.016156	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
670	chr20	11209521	11209522	rs6040449	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals	NA	20p12.2	LOC339593	rs6040449-?	0.63	4E-6		0.14	[0.081-0.199] unit increase	Illumina [NR]	N
670	chr20	11213585	11213586	rs73082474	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.2	LOC339593	rs73082474-A	0.97898	7E-15		0.0503569	[0.038-0.063] unit increase	NR [13737936] (imputed)	N
670	chr20	11227111	11227112	rs55716188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.2		rs55716188-?	NR	9E-17				NR [~ 8900000] (imputed)	N
670	chr20	11227111	11227112	rs55716188	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs55716188-?	NR	2E-14		0.0508498	[0.037-0.065] unit increase	Affymetrix [20259828] (imputed)	N
670	chr20	11234531	11234532	rs1473702	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p12.2		rs1473702-?	NR	5E-9				NR [~ 8900000] (imputed)	N
670	chr20	11237742	11237743	rs6040482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p12.2		rs6040482-?	NR	2E-7				NR [~ 8900000] (imputed)	N
670	chr20	11239242	11239243	rs6108881	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.2		rs6108881-?	NR	5E-14		0.0168706	[0.012-0.022] unit increase	Affymetrix [20259828] (imputed)	N
670	chr20	11244979	11244980	rs6033075	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	20p12.2	NR	rs6033075-?	NR	1E-22		0.38	[0.28-0.48] unit decrease	Illumina [at least 830937] (imputed)	N
671	chr20	11273156	11273157	rs6033092	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	20p12.2	NR	rs6033092-?		7E-6		1.55	[1.28-1.87]	Illumina [NR]	N
671	chr20	11304210	11304211	rs6078132	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.2		rs6078132-A	0.46	4E-21		9.44	z score increase	Affymetrix [9061022] (imputed)	N
671	chr20	11306636	11306637	rs6040537	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.2	NR	rs6040537-C	0.01742	2E-8	(LRPPRC)	0.08601	NR unit increase	Illumina [1671387] (imputed)	N
671	chr20	11366885	11366888	rs199527177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20p12.2		rs199527177-T	0.289325	2E-10		0.015868265	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
671	chr20	11379841	11379842	rs1154723	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20p12.2	NR	rs1154723-C	0.9475	9E-6	(EA)	0.0681	[0.038-0.098] unit increase	Illumina [~ 11800000] (imputed)	N
671	chr20	11393881	11393882	rs6108958	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	20p12.2	NR	rs6108958-?	NR	2E-7	(genus_Abiotrophia)	0.8152663	[0.54-1.09] unit increase	Affymetrix [210924]	N
671	chr20	11402367	11402368	rs11697311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.2		rs11697311-T	0.379324	1E-11		0.015709493	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
672	chr20	11502618	11502618	rs141526427	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	20p12.2	NR	rs141526427-?	NR	3E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
672	chr20	11526928	11526929	rs7262682	31407531	Do AN	2019-08-13	Mol Genet Genomic Med	Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.	Relative wall thickness x antihypertensive treatment interaction	up to 2,068 African American individuals	up to 613 European ancestry individuals	20p12.2	LINC00687, LOC339593	rs7262682-?	NR	5E-8	(dCCB versus ACE, AA)	0.141	[0.09-0.192] unit increase	Affymetrix, Illumina [up to 2191661] (imputed)	N
673	chr20	11543691	11543692	rs6033180	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	20p12.2	intergenic	rs6033180-?	NR	8E-6		0.224	[0.13-0.32] unit increase	Illumina [at least 13000000] (imputed)	N
673	chr20	11567048	11567049	rs6134303	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	20p12.2		rs6134303-?	NR	8E-7	(mucinous_all)	1.59		Illumina [11595112] (imputed)	N
673	chr20	11573835	11573836	rs2144638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hearing loss, difficulty in hearing	14,654 European ancestry cases, 474,839 European ancestry controls, 3,400 East Asian ancestry cases, 175,326 East Asian ancestry controls	NA	20p12.2		rs2144638-C	NR	5E-8		0.0615	[0.039-0.084] unit decrease	Affymetrix, Illumina [25845022] (imputed)	N
673	chr20	11577304	11577305	rs113179280	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p12.2	PGAM3P, LINC00687	rs113179280-T	NR	5E-6	(sleep onset)	0.4007	[0.23-0.57] unit decrease	Affymetrix [7141204] (imputed)	N
673	chr20	11608338	11608339	rs565552584	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	20p12.2	PGAM3P	rs565552584-T	0.0028	8E-6		0.6424	[0.36-0.92] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
675	chr20	11807581	11807582	rs1814106	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p12.2	NR	rs1814106-?	NR	4E-6				Affymetrix [NR]	N
675	chr20	11863499	11863500	rs6078373	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	20p12.2	NR	rs6078373-A	0.402	9E-11		0.016073052	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
675	chr20	11863499	11863500	rs6078373	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	20p12.2	NR	rs6078373-A	0.402	1E-9		0.0135594	[0.0092-0.0179] unit increase	NR [9732723] (imputed)	N
675	chr20	11886642	11886643	rs1232482	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	20p12.2	NR	rs1232482-C	0.6	2E-9		0.97	[0.96, 0.98]	Affymetrix [39302896] (imputed)	N
675	chr20	11886642	11886643	rs1232482	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20p12.2	BTBD3	rs1232482-T	0.401	5E-14		0.1155	[0.086-0.145] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
675	chr20	11891723	11891724	rs6131281	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	20p12.2	NR	rs6131281-?		3E-13		0.0160808	[0.012-0.02] unit increase	Affymetrix [19400418] (imputed)	N
675	chr20	11908009	11908010	rs182429428	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20p12.2	Intergenic	rs182429428-C	0.999	3E-6	(AA)	2.627	NR unit increase	Illumina [NR] (imputed)	N
675	chr20	11918924	11918925	rs184757371	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20p12.2	Intergenic	rs184757371-A	0.999	3E-6	(AA)	2.679	NR unit increase	Illumina [NR] (imputed)	N
676	chr20	12004112	12004113	rs1555145	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	SPTLC3	rs1555145-?	NR	2E-6	(adenosine diphosphate)	0.19138345	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
676	chr20	12055279	12055280	rs59640442	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in lacunar ischaemic stroke (modified Rankin score)	992 European and unknown ancestry individuals	NA	20p12.1	intergenic	rs59640442-C	0.14	2E-6		5.36	[4.67-6.05]	Affymetrix, Illumina [~ 8500000] (imputed)	N
677	chr20	12077305	12077306	rs6033301	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	SPTLC3	rs6033301-?	NR	4E-6	(quinolinic acid)	0.19023971	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
677	chr20	12082641	12082642	rs11907106	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.1	BTBD3	rs11907106-A	0.0030	4E-6	(Sleep duration )	0.01	[NR] min/d increase	Illumina [899892]	N
677	chr20	12096896	12096897	rs6078460	30945699	Wei J	2019-04-04	Med Sci Monit	Genome-Wide Association Study Identifies a Genetic Prediction Model for Postoperative Survival in Patients with Hepatocellular Carcinoma.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry cases	758 East Asian ancestry cases	20p12.1	intergenic	rs6078460-?	NR	2E-11				Affymetrix [630573]	N
677	chr20	12096896	12096897	rs6078460	30945673	Prasad G	2019-03-01	J Genet	Genomewide association study for C-reactive protein in Indians replicates known associations of common variants.	Postoperative survival time in hepatocellular carcinoma	367 East Asian ancestry individuals	758 East Asian ancestry individuals	20p12.1	intergenic	rs6078460-?	NR	2E-11				Affymetrix [630573]	N
678	chr20	12222164	12222165	rs6134479	25060954	Wolber LE	2014-07-24	Hum Mol Genet	Salt-inducible kinase 3, SIK3, is a new gene associated with hearing.	Hearing function	1,022 European ancestry individuals, 280 Carlantino (founder/genetic isolate) individuals, 1,097 Friuli Venezia Giulia (founder/genetic isolate) individuals, 804 Korcula (founder/genetic isolate) individuals, 497 Split (founder/genetic isolate) individuals, 421 Cilento (founder/genetic isolate) individuals, 470 Talana (founder/genetic isolate) individuals, 348 Silk Road individuals	NA	20p12.1	BTBD3, PA2G4P2	rs6134479-G	NR	5E-7	(PC3)			Affymetrix, Illumina [> 2300000] (imputed)	N
678	chr20	12224953	12224954	rs17800640	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p12.1	NR	rs17800640-?	NR	5E-39				Affymetrix [NR]	N
678	chr20	12262469	12262470	rs74938950	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	20p12.1	BTBD3, PA2G4P2	rs74938950-T	0.02	1E-7		1.11	[0.7-1.52] unit increase	Illumina [7797526] (imputed)	N
678	chr20	12262469	12262470	rs74938950	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (delayed recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	20p12.1	PA2G4P2, BTBD3	rs74938950-T	0.02	5E-6		0.81	[0.46-1.16] unit increase	Illumina [7797256] (imputed)	N
678	chr20	12291522	12291523	rs73078593	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p12.1	BTBD3, SPTLC3	rs73078593-C	0.03	1E-6	(EA)	0.2829	[0.17-0.4] unit decrease	Illumina [~ 9000000] (imputed)	N
678	chr20	12291522	12291523	rs73078593	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20p12.1	BTBD3, SPTLC3	rs73078593-C	0.03	1E-6		0.278	[0.17-0.39] unit decrease	Illumina [~ 9000000] (imputed)	N
679	chr20	12350261	12350262	rs183673312	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	20p12.1	Intergenic	rs183673312-T	NR	4E-6	(women)	0.334801	[0.19-0.48] unit decrease	Illumina [13520550] (imputed)	N
679	chr20	12401324	12401325	rs8121916	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	20p12.1	NR	rs8121916-C		3E-6		0.1306	[0.076-0.185] SD units decrease	NR [10700000] (imputed)	N
679	chr20	12428259	12428260	rs6078585	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	20p12.1	BTBD3, SPTLC3	rs6078585-T	0.55	2E-6	(EA)	1.2	[1.12-1.27]	Affymetrix, Illumina [10973920] (imputed)	N
679	chr20	12428259	12428260	rs6078585	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	20p12.1	BTBD3, SPTLC3	rs6078585-T	0.54	1E-6		1.2	[1.12-1.27]	Affymetrix, Illumina [10973920] (imputed)	N
680	chr20	12463296	12463297	rs10211700	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p12.1	PA2G4P2	rs10211700-T	NR	1E-6	(resting duration)	0.344	[0.2-0.48] unit decrease	Affymetrix [7141204] (imputed)	N
680	chr20	12469557	12469558	rs62217115	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p12.1	PA2G4P2	rs62217115-G	NR	3E-6	(sleep latency, weekdays)	0.8833	[0.51-1.26] unit increase	Affymetrix [7141204] (imputed)	N
680	chr20	12476494	12476495	rs6033434	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	20p12.1	intergenic	rs6033434-?	NR	2E-9		0.00507044	[-0.00012-0.01026] unit decrease	Affymetrix [25921788] (imputed)	N
680	chr20	12476494	12476495	rs6033434	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	20p12.1	intergenic	rs6033434-?	NR	2E-9		0.0158011	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
680	chr20	12502301	12502302	rs6041422	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	BTBD3	rs6041422-?	NR	8E-6	(creatinine)	0.23383853	[0.13-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
680	chr20	12506344	12506345	rs6041428	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	20p12.1	intergenic	rs6041428-G	0.9842	6E-6		1.256	[0.71-1.8] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
680	chr20	12541105	12541106	rs140824800	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	20p12.1	intergenic	rs140824800-A	0.011	1E-6		7.289	[3.265-16.28]	Illumina [7585874] (imputed)	N
681	chr20	12672012	12672013	rs1413017	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	20p12.1		rs1413017-?	NR	4E-6	(ser_lg_lmp)	1.75		Illumina [11595112] (imputed)	N
681	chr20	12689600	12689601	rs35548558	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	20p12.1	NR	rs35548558-T	NR	4E-6		0.027	[0.015-0.039] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
681	chr20	12708515	12708516	rs6134650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.1		rs6134650-?	NR	5E-8				NR [~ 8900000] (imputed)	N
682	chr20	12730041	12730042	rs1413020	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (recreational physical activity interaction)	8,203 African American females, 3,484 Hispanic females	NA	20p12.1	PA2G4P2, SPTLC3	rs1413020-G	NR	3E-6		0.02	[NR] unit increase	Affymetrix [706791]	N
682	chr20	12732878	12732879	rs61404834	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	20p12.1	SPTLC3	rs61404834-A	0.06	8E-10		1.69	[NR]	Illumina [747089]	N
683	chr20	12874584	12874585	rs2073233	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	20p12.1	intergenic	rs2073233-?	0.43	1E-6				Illumina [448293]	N
683	chr20	12897855	12897856	rs149383	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs149383-C	NR	4E-13		0.158261	[0.12-0.2] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12897855	12897856	rs149383	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs149383-C	NR	2E-15		0.175309	[0.13-0.22] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12912900	12912902	rs34267144	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs34267144-C	NR	4E-10		0.101304	[0.07-0.133] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12936519	12936520	rs6033555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6033555-G	NR	1E-10		0.183323	[0.13-0.24] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12936519	12936520	rs6033555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6033555-G	NR	2E-13		0.121014	[0.089-0.153] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-G	NR	5E-11		0.106	[0.074-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-A	NR	5E-11		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-A	NR	5E-11		0.0324	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-A	NR	5E-11		0.0443	[0.031-0.057] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-A	NR	5E-11		0.0853	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-T	NR	5E-11		0.0338	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-T	NR	5E-11		0.0677	[0.048-0.088] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-G	NR	5E-11		0.0299	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-T	NR	5E-11		0.0904	[0.064-0.117] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-G	NR	5E-11		0.0547	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-A	NR	5E-11		0.1064	[0.075-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-C	NR	5E-11		0.0894	[0.063-0.116] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12940648	12940649	rs6041735	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041735-G	NR	5E-11		0.0338	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942599	12942600	rs8183164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs8183164-A	NR	7E-13		0.121791	[0.089-0.155] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12942599	12942600	rs8183164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs8183164-A	NR	2E-13		0.127097	[0.093-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12942599	12942600	rs8183164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs8183164-A	NR	4E-12		0.0945804	[0.068-0.121] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12942599	12942600	rs8183164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs8183164-A	NR	4E-12		0.0683966	[0.049-0.088] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12942599	12942600	rs8183164	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs8183164-A	NR	1E-12		0.0722024	[0.052-0.092] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-T	NR	7E-12		0.0514	[0.037-0.066] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-G	NR	6E-12		0.0393	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-G	NR	6E-12		0.0672	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	7E-12		0.0601	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-G	NR	7E-12		0.0564	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-T	NR	6E-12		0.0917	[0.065-0.118] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-G	NR	6E-12		0.0407	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-T	NR	6E-12		0.032	[0.023-0.041] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-C	NR	6E-12		0.0407	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	7E-12		0.1496	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	6E-12		0.0411	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-C	NR	7E-12		0.0423	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	7E-12		0.0564	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	6E-12		0.0917	[0.065-0.118] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12942648	12942649	rs3848744	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848744-A	NR	6E-12		0.0407	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-G	NR	6E-12		0.0795	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-G	NR	6E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-T	NR	6E-12		0.0494	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-T	NR	6E-12		0.0394	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-G	NR	6E-12		0.0394	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-G	NR	6E-12		0.0571	[0.041-0.073] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-G	NR	6E-12		0.0329	[0.023-0.042] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-A	NR	6E-12		0.0462	[0.033-0.059] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-C	NR	6E-12		0.0394	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-T	NR	6E-12		0.0793	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-A	NR	6E-12		0.0413	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-A	NR	6E-12		0.1785	[0.13-0.23] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-C	NR	6E-12		0.0394	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-A	NR	6E-12		0.0496	[0.035-0.064] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12943736	12943737	rs3843765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843765-C	NR	6E-12		0.0857	[0.061-0.11] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-G	NR	7E-12		0.0751	[0.054-0.096] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-G	NR	7E-12		0.0779	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-G	NR	7E-12		0.0559	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-G	NR	7E-12		0.0565	[0.04-0.073] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-C	NR	7E-12		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-T	NR	7E-12		0.0712	[0.051-0.092] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-C	NR	7E-12		0.0685	[0.049-0.088] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-C	NR	7E-12		0.0231	[0.016-0.03] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-T	NR	7E-12		0.085	[0.061-0.109] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-C	NR	7E-12		0.0671	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-A	NR	7E-12		0.0295	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-T	NR	7E-12		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-T	NR	7E-12		0.0669	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-G	NR	7E-12		0.0569	[0.041-0.073] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12944066	12944067	rs3848745	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848745-C	NR	7E-12		0.0409	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0706	[0.05-0.091] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-A	NR	9E-12		0.184	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0754	[0.054-0.097] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-T	NR	9E-12		0.0778	[0.055-0.1] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-T	NR	9E-12		0.0782	[0.056-0.101] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-C	NR	9E-12		0.0458	[0.033-0.059] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0605	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0561	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-C	NR	9E-12		0.0773	[0.055-0.099] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.056	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-T	NR	9E-12		0.0947	[0.067-0.122] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0845	[0.06-0.109] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0562	[0.04-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-A	NR	9E-12		0.0403	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3903703-G	NR	9E-12		0.0778	[0.055-0.1] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12945962	12945963	rs3903703	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 24:0)	7,915 European ancestry individuals	NA	20p12.1	SPTLC3	rs3903703-A	NR	6E-6		4.524	[NR] Z score decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-A	NR	2E-11		0.04	[0.028-0.052] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.0647	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.055	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.0561	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-G	NR	2E-11		0.0547	[0.039-0.071] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.2168	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-G	NR	2E-11		0.0461	[0.033-0.059] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.0525	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.0706	[0.05-0.091] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.1425	[0.1-0.18] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.1154	[0.082-0.149] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.0575	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-T	NR	2E-11		0.0567	[0.04-0.073] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947531	12947532	rs4814173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814173-C	NR	2E-11		0.036	[0.025-0.047] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-G	NR	2E-11		0.0648	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-A	NR	2E-11		0.0361	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-C	NR	2E-11		0.0329	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-T	NR	2E-11		0.1127	[0.08-0.145] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-G	NR	2E-11		0.058	[0.041-0.075] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-T	NR	2E-11		0.0665	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-T	NR	2E-11		0.0485	[0.034-0.063] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12947882	12947883	rs4813102	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813102-C	NR	2E-11		0.0574	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-T	NR	7E-12		0.0414	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-G	NR	7E-12		0.0405	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-C	NR	7E-12		0.0555	[0.04-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-G	NR	7E-12		0.0995	[0.071-0.128] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-C	NR	7E-12		0.0783	[0.056-0.101] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-C	NR	7E-12		0.0575	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-G	NR	7E-12		0.0861	[0.061-0.111] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-T	NR	7E-12		0.0694	[0.05-0.089] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-G	NR	7E-12		0.067	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-A	NR	7E-12		0.0406	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-C	NR	7E-12		0.0406	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-T	NR	7E-12		0.0495	[0.035-0.064] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-G	NR	7E-12		0.0632	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-A	NR	7E-12		0.111	[0.079-0.143] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848746-T	NR	7E-12		0.0486	[0.035-0.063] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12950605	12950606	rs3848746	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs3848746-?	NR	2E-9	(N24S16)	0.27	[0.18-0.36] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	5E-13		0.0689	[0.05-0.088] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.088	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.1885	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.0804	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-T	NR	4E-13		0.0984	[0.072-0.125] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.0618	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-C	NR	4E-13		0.0663	[0.048-0.084] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.0779	[0.057-0.099] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-T	NR	5E-13		0.0704	[0.051-0.089] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-C	NR	5E-13		0.1734	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-T	NR	5E-13		0.1884	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	5E-13		0.0716	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-T	NR	4E-13		0.0887	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-A	NR	4E-13		0.088	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12952963	12952964	rs2327452	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327452-G	NR	4E-13		0.0621	[0.045-0.079] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-A	NR	4E-13		0.065	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-C	NR	4E-13		0.0559	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.0479	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-C	NR	4E-13		0.0769	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.0768	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.0441	[0.032-0.056] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.0946	[0.069-0.12] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-A	NR	4E-13		0.0789	[0.058-0.1] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.1885	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-C	NR	4E-13		0.1885	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.0445	[0.033-0.056] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-G	NR	4E-13		0.1885	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-T	NR	4E-13		0.0886	[0.065-0.113] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-C	NR	4E-13		0.0243	[0.018-0.031] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12953933	12953934	rs2327451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327451-T	NR	4E-13		0.0768	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-C	NR	1E-11		0.0579	[0.041-0.075] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-G	NR	1E-11		0.0592	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-C	NR	1E-11		0.0646	[0.046-0.083] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-A	NR	1E-11		0.0908	[0.065-0.117] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-G	NR	1E-11		0.0565	[0.04-0.073] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-G	NR	1E-11		0.0593	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-A	NR	1E-11		0.1484	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-C	NR	1E-11		0.0842	[0.06-0.109] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-A	NR	1E-11		0.0555	[0.039-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-A	NR	1E-11		0.0973	[0.069-0.126] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-T	NR	1E-11		0.0454	[0.032-0.059] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-G	NR	1E-11		0.0233	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-T	NR	1E-11		0.0995	[0.071-0.128] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12955600	12955601	rs4508668	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4508668-G	NR	1E-11		0.0995	[0.071-0.128] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958492	12958492	rs74181389	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs74181389-A	0.4403	9E-23	(Cer d16:1/22:0)	0.2052	[0.16-0.25] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958492	12958492	rs74181389	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs74181389-A	0.4403	2E-16	(SM d16:1/22:0)	0.1256	[0.095-0.156] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958492	12958492	rs74181389	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs74181389-A	0.4403	1E-8	(Cer d18:1/24:1)	0.0829	[0.054-0.112] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958492	12958492	rs74181389	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs74181389-A	0.4403	1E-10	(Cer d18:2/24:1)	0.1047	[0.072-0.137] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958494	12958494	rs34091864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	20p12.1		rs34091864-ACTC	NR	7E-9		0.0488	[0.032-0.065] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
683	chr20	12958494	12958494	rs34091864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20p12.1		rs34091864-ACTC	NR	1E-16		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
683	chr20	12958686	12958687	rs438568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs438568-A	0.390127	2E-8		0.0227161	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
683	chr20	12958686	12958687	rs438568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs438568-A	0.390127	5E-9		0.0235469	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
683	chr20	12958686	12958687	rs438568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20p12.1		rs438568-A	0.390127	7E-9		0.0239229	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
683	chr20	12958686	12958687	rs438568	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20p12.1		rs438568-A	0.390127	1E-8		0.0244152	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
683	chr20	12958686	12958687	rs438568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20p12.1		rs438568-G	NR	1E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-T	NR	1E-11		0.0499	[0.036-0.064] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0413	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0634	[0.045-0.082] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-A	NR	1E-11		0.0402	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-A	NR	1E-11		0.0629	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-G	NR	1E-11		0.7703	[0.55-0.99] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-T	NR	1E-11		0.0331	[0.023-0.043] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0309	[0.022-0.04] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-T	NR	1E-11		0.0465	[0.033-0.06] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-A	NR	1E-11		0.0664	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-G	NR	1E-11		0.1496	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-A	NR	1E-11		0.0418	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0658	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-T	NR	1E-11		0.0821	[0.058-0.106] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0387	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-T	NR	1E-11		0.2202	[0.16-0.28] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-G	NR	1E-11		0.0389	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-G	NR	1E-11		0.0849	[0.06-0.109] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs438568-C	NR	1E-11		0.0482	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12958686	12958687	rs438568	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20p12.1	LINC01722	rs438568-A	0.391207	1E-18		0.00353689	[0.0028-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
683	chr20	12958686	12958687	rs438568	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs438568-?	NR	8E-18	(N22S19)	0.37	[0.28-0.46] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12958686	12958687	rs438568	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs438568-?	NR	4E-29	(S19Sum)	0.48	[0.4-0.56] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12958686	12958687	rs438568	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs438568-?	NR	3E-13	(N26S19)	0.33	[0.24-0.42] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12958686	12958687	rs438568	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs438568-?	NR	1E-27	(N24S19)	0.47	[0.39-0.55] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12958686	12958687	rs438568	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20p12.1	NR	rs438568-A	0.391162	7E-16		0.0158686	[0.012-0.02] unit decrease	Affymetrix [15000001]	N
683	chr20	12958686	12958687	rs438568	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.390753	4E-9		0.0125944	[0.0084-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
683	chr20	12958686	12958687	rs438568	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20p12.1	SPTLC3	rs438568-?	NR	1E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	9E-15	(SM d16:1/18:0)	0.1161	[0.087-0.145] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	8E-21	(S1P d16:1)	0.1199	[0.095-0.145] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	7E-18	(SM d16:1/20:0)	0.1254	[0.097-0.154] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	5E-17	(Cer d16:1/20:0)	0.1694	[0.13-0.21] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	3E-13	(Cer d16:1/18:0)	0.1471	[0.11-0.19] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	2E-8	(HexCer d16:1/16:0)	0.1035	[0.068-0.139] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	1E-9	(SM d16:1/24:0)	0.1017	[0.069-0.134] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	1E-22	(Cer d16:1/23:0)	0.1933	[0.15-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs438568-A	0.4406	1E-15	(SM d16:1/24:1)	0.115	[0.087-0.143] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12958686	12958687	rs438568	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	20p12.1	SPTLC3	rs438568-G	NR	1E-9	(CER(40:2;2))	0.2111	[0.14-0.28] unit decrease	Illumina [~ 9300000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-A	NR	2E-11		0.1004	[0.071-0.13] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.1554	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.062	[0.044-0.08] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-A	NR	2E-11		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.0649	[0.046-0.084] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-A	NR	2E-11		0.158	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-A	NR	2E-11		0.0556	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-T	NR	2E-11		0.112	[0.079-0.145] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.0549	[0.039-0.071] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-T	NR	2E-11		0.0966	[0.068-0.125] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-C	NR	2E-11		0.0699	[0.05-0.09] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-C	NR	2E-11		0.0472	[0.033-0.061] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-C	NR	2E-11		0.0546	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-A	NR	2E-11		0.0767	[0.054-0.099] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-C	NR	2E-11		0.0546	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-G	NR	2E-11		0.0443	[0.031-0.057] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-T	NR	2E-11		0.0546	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814175-T	NR	2E-11		0.1961	[0.14-0.25] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959093	12959094	rs4814175	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C22:0)	2,217 European ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-?	NR	3E-11		0.031	[0.021-0.041] unit decrease	Affymetrix [9346801] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	5E-9	(Cer d18:2/23:0)	0.0992	[0.065-0.133] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	5E-16	(HexCer d16:1/24:0)	0.1588	[0.12-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	5E-11	(Cer d18:1/24:0)	0.0904	[0.063-0.117] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	4E-9	(Cer d18:1/22:0)	0.0854	[0.056-0.115] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	4E-11	(Cer d18:1/23:0)	0.0913	[0.064-0.119] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	3E-9	(Cer d18:2/24:0)	0.0915	[0.06-0.123] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	3E-9	(Cer d18:2/22:0)	0.0999	[0.066-0.134] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	2E-9	(Cer d16:1/16:0)	0.0934	[0.064-0.123] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	2E-8	(Cer d18:1/25:0)	0.0793	[0.051-0.107] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	2E-16	(HexCer d16:1/22:0)	0.1599	[0.12-0.2] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	1E-26	(Cer d16:1/24:0)	0.1978	[0.16-0.23] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959093	12959094	rs4814175	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814175-A	0.4643	1E-25	(Cer d16:1/24:1)	0.2114	[0.17-0.25] unit increase	Illumina [~ 47000000] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	1E-13		0.0298675	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	3E-15		0.0327374	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	4E-18		0.0357679	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	2E-16		0.0335659	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	5E-10		0.0250076	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	1E-13		0.0294979	[0.022-0.037] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	5E-14		0.0301162	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	2E-15		0.0336247	[0.025-0.042] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	7E-14		0.0308375	[0.023-0.039] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20p12.1		rs4814176-T	0.391808	4E-12		0.0286039	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0814	[0.058-0.105] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0705	[0.05-0.091] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0328	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0422	[0.03-0.055] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-C	NR	2E-11		0.069	[0.049-0.089] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0559	[0.04-0.072] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0754	[0.053-0.097] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0553	[0.039-0.071] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0308	[0.022-0.04] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0546	[0.039-0.07] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0328	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-G	NR	2E-11		0.0574	[0.041-0.074] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-A	NR	2E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-A	NR	2E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-A	NR	2E-11		0.0397	[0.028-0.051] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-C	NR	2E-11		0.0222	[0.016-0.029] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-T	NR	2E-11		0.0865	[0.061-0.112] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814176-A	NR	2E-11		0.0231	[0.016-0.03] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814176-?	NR	9E-9		0.0014	[0.00081-0.00199] unit increase	Affymetrix [21347608] (imputed)	N
683	chr20	12959397	12959398	rs4814176	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	20p12.1	SPTLC3	rs4814176-?	NR	3E-13		0.0035	[0.0027-0.0043] unit increase	Affymetrix [21347608] (imputed)	N
683	chr20	12959397	12959398	rs4814176	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	20p12.1	SPTLC3	rs4814176-T	0.3758	4E-13	(Hydroxysphingomyeline C16:1)	0.0369	[0.027-0.047] unit increase	Affymetrix, Illumina [up to 296619] (imputed)	N
683	chr20	12959397	12959398	rs4814176	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Sphingolipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	20p12.1	SPTLC3	rs4814176-T	0.3752	2E-32	(Hydroxysphingomyeline C24:1)	0.062	[0.052-0.072] unit increase	Affymetrix, Illumina [up to 296619] (imputed)	N
683	chr20	12959397	12959398	rs4814176	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	20p12.1	SPTLC3	rs4814176-T	0.4	7E-33	(X-10510/palmitoyl sphingomyelin)	0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
683	chr20	12959397	12959398	rs4814176	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	20p12.1	SPTLC3	rs4814176-T	0.39	3E-17	(X-08402)	0.022	[0.016-0.028] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
683	chr20	12959884	12959885	rs1321940	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs1321940-A	0.39044	2E-9		0.0254332	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	8E-25		0.0862	[0.07-0.103] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	7E-25		0.0603	[0.049-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	7E-25		0.061	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	9E-25		0.0615	[0.05-0.073] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	1E-24		0.1	[0.081-0.119] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	1E-24		0.1	[0.081-0.119] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	7E-25		0.1225	[0.099-0.146] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	7E-25		0.0597	[0.048-0.071] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-T	NR	1E-24		0.0875	[0.071-0.104] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	8E-25		0.0885	[0.072-0.105] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	7E-25		0.0604	[0.049-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-A	NR	9E-25		0.0671	[0.054-0.08] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	9E-25		0.0636	[0.051-0.076] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-T	NR	1E-24		0.0806	[0.065-0.096] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	9E-25		0.0718	[0.058-0.086] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-A	NR	1E-24		0.0597	[0.048-0.071] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-G	NR	9E-25		0.0706	[0.057-0.084] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1321940-C	NR	7E-25		0.062	[0.05-0.074] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs1321940-?	NR	5E-11	(N23S20)	0.32	[0.23-0.41] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs1321940-?	NR	3E-21	(N24DS19)	0.44	[0.35-0.53] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs1321940-A	0.318628	6E-12	(sphingomyelin (d18:1/22:2, d18:2/22:1, d16:1/24:2)*)	0.166	[0.12-0.21] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs1321940-A	0.318628	5E-25	(sphingomyelin (d18:0/20:0, d16:0/22:0)*)	0.25	[0.2-0.3] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs1321940-A	0.318628	4E-23	(sphingomyelin (d18:1/19:0, d19:1/18:0)*)	0.238	[0.19-0.29] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs1321940-A	0.318628	2E-15	(sphingomyelin (d18:1/21:0, d17:1/22:0, d16:1/23:0)*)	0.189	[0.14-0.24] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12959884	12959885	rs1321940	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs1321940-A	0.318628	1E-56	(sphingomyelin (d18:1/25:0, d19:0/24:1, d20:1/23:0, d19:1/24:0)*)	0.379	[0.33-0.43] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12960152	12960153	rs6078854	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20p12.1		rs6078854-T	0.648171	3E-10		0.0273108	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
683	chr20	12960955	12960956	rs4814177	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814177-G	NR	2E-11		0.1473	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12961550	12961551	rs6074536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074536-G	NR	5E-11		0.0627	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962260	12962261	rs3910136	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3910136-C	NR	9E-12		0.1641	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	4E-63		0.254321	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	1E-40		0.20194	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	6E-12		0.0968846	[0.069-0.124] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-38		0.155435	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	6E-69		0.270671	[0.24-0.3] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	3E-14		0.105406	[0.078-0.133] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-12		0.0997821	[0.072-0.128] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	3E-40		0.160249	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-33		0.144668	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-49		0.179363	[0.16-0.2] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	5E-18		0.106495	[0.082-0.131] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	4E-10		0.0750493	[0.052-0.099] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	1E-14		0.0923239	[0.069-0.116] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0707	[0.051-0.09] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0294	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-A	NR	3E-12		0.038	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0562	[0.041-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0415	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.042	[0.03-0.054] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0644	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-A	NR	3E-12		0.0415	[0.03-0.053] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0661	[0.048-0.085] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0727	[0.052-0.093] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-11		0.0629459	[0.045-0.081] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	4E-35		0.146689	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0935	[0.067-0.12] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	3E-13		0.0832529	[0.061-0.106] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	2E-31		0.117935	[0.098-0.138] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	5E-37		0.112056	[0.095-0.129] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	1E-57		0.145315	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_41:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	8E-41		0.138011	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs364585-A	NR	5E-45		0.152788	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0646	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.1537	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0888	[0.064-0.114] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-G	NR	3E-12		0.0661	[0.048-0.085] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-G	NR	3E-12		0.0306	[0.022-0.039] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-T	NR	3E-12		0.0332	[0.024-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs364585-C	NR	3E-12		0.0711	[0.051-0.091] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12962717	12962718	rs364585	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20p12.1	SPTLC3	rs364585-A	0.391481	1E-18		0.00353293	[0.0028-0.0043] unit increase	Affymetrix [13995440] (imputed)	N
683	chr20	12962717	12962718	rs364585	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs364585-A	0.321065	3E-11	(ceramide (d18:2/24:1, d18:1/24:2)*)	0.159	[0.11-0.21] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12962717	12962718	rs364585	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	20p12.1	SPTLC3	rs364585-G	NR	2E-9	(CER(40:1;2))	0.199	[0.13-0.26] unit decrease	Illumina [~ 9300000] (imputed)	N
683	chr20	12962717	12962718	rs364585	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20p12.1	SPTLC3	rs364585-A	0.367	4E-11	(Trans-ethnic initial)	0.0249	[0.017-0.032] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
683	chr20	12962717	12962718	rs364585	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20p12.1	SPTLC3	rs364585-A	0.38	4E-10		0.025	[NR] unit decrease	NR [NR] (imputed)	N
683	chr20	12963185	12963186	rs6078855	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078855-A	NR	6E-11		0.0322	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12963662	12963663	rs6078856	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078856-T	NR	6E-11		0.0322	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12964153	12964154	rs6074537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074537-G	NR	5E-11		0.0522	[0.037-0.068] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12965104	12965105	rs3848750	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848750-G	NR	7E-12		0.0404	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12965400	12965401	rs3848751	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848751-T	NR	7E-12		0.0404	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12965664	12965665	rs2876240	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876240-T	NR	2E-12		0.0733	[0.053-0.094] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966050	12966051	rs3848752	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848752-G	NR	7E-12		0.0483	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0763	[0.061-0.092] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0596	[0.048-0.072] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	1E-22		0.1537	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-T	NR	2E-22		0.117	[0.093-0.141] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0516	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.081	[0.065-0.097] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-C	NR	2E-22		0.1002	[0.08-0.12] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-C	NR	1E-22		0.0522	[0.042-0.063] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0516	[0.041-0.062] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-A	NR	2E-22		0.0746	[0.06-0.089] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0932	[0.075-0.112] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-A	NR	2E-22		0.0647	[0.052-0.078] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-T	NR	2E-22		0.0748	[0.06-0.09] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0932	[0.074-0.112] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0565	[0.045-0.068] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0762	[0.061-0.091] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-A	NR	2E-22		0.0904	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168622-G	NR	2E-22		0.0919	[0.073-0.11] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12966088	12966089	rs168622	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20p12.1	BTBD3, SPTLC3	rs168622-T	0.320712	3E-22	(myristoyl dihydrosphingomyelin (d18:0/14:0)*)	0.234	[0.19-0.28] unit increase	Illumina [13039987] (imputed)	N
683	chr20	12966088	12966089	rs168622	32489964	Cresci S	2020-01-03	J Lipid Atheroscler	Genetic Architecture of Circulating Very-Long-Chain (C24:0 and C22:0) Ceramide Concentrations.	Ceramide levels (C24:0)	2,217 European ancestry individuals	NA	20p12.1	SPTLC3	rs168622-?	NR	1E-8		0.1	[0.067-0.133] unit decrease	Affymetrix [9346801] (imputed)	N
683	chr20	12966088	12966089	rs168622	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	20p12.1	SPTLC3	rs168622-G	NR	9E-10	(Total_CER)	0.1994	[0.14-0.26] unit decrease	Illumina [~ 9300000] (imputed)	N
683	chr20	12966088	12966089	rs168622	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	20p12.1	SPTLC3	rs168622-G	NR	3E-9	(CER(42:2;2))	0.1897	[0.13-0.25] unit decrease	Illumina [~ 9300000] (imputed)	N
683	chr20	12966319	12966320	rs3910135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3910135-T	NR	9E-12		0.0547	[0.039-0.07] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	8E-25		0.16479	[0.13-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	7E-16		0.129165	[0.098-0.161] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	6E-15		0.099012	[0.074-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	9E-26		0.171001	[0.14-0.2] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	5E-16		0.103426	[0.078-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	1E-11		0.086	[0.061-0.111] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	8E-16		0.103262	[0.078-0.128] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078865-C	NR	6E-11		0.0479	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	2E-12		0.0882907	[0.064-0.113] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	8E-12		0.073044	[0.052-0.094] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	7E-11		0.0606396	[0.042-0.079] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	1E-20		0.0893163	[0.071-0.108] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_41:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	2E-17		0.0923046	[0.071-0.114] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969022	12969023	rs6078865	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs6078865-A	NR	1E-18		0.101192	[0.079-0.124] unit decrease	Affymetrix [87696910] (imputed)	N
683	chr20	12969240	12969241	rs4081899	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4081899-G	NR	1E-11		0.0549	[0.039-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20p12.1		rs680379-A	0.391134	4E-8		0.0217777	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	1E-63		0.254462	[0.22-0.28] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_49:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	1E-40		0.201051	[0.17-0.23] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_46:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	6E-12		0.0965312	[0.069-0.124] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	5E-38		0.154102	[0.13-0.18] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_43_2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-69		0.270684	[0.24-0.3] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:3_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	3E-14		0.105001	[0.078-0.132] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_40:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-12		0.0994548	[0.072-0.127] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	6E-40		0.159037	[0.14-0.18] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_38:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	7E-33		0.143024	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	7E-49		0.177821	[0.15-0.2] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_35:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	1E-17		0.104731	[0.081-0.129] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_33:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	4E-10		0.0747933	[0.051-0.098] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_32:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	1E-14		0.0921132	[0.069-0.115] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.0835	[0.058-0.109] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.1052	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.0875	[0.06-0.115] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-10		0.0509	[0.035-0.067] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.0442	[0.03-0.058] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-T	NR	2E-10		0.0588	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.0513	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol-O_40:0_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	1E-11		0.0633315	[0.045-0.082] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-34		0.144787	[0.12-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-10		0.1052	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_42:7_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	4E-13		0.0828879	[0.061-0.105] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	5E-32		0.118553	[0.099-0.138] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:2_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	5E-37		0.111547	[0.094-0.129] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_42:1_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	5E-57		0.144084	[0.13-0.16] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_41:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	3E-41		0.138293	[0.12-0.16] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide_40:1_[M-H]1- levels	13,814 British ancestry individuals	NA	20p12.1		rs680379-A	NR	4E-45		0.152457	[0.13-0.17] unit increase	Affymetrix [87696910] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(42:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-A	NR	2E-10		0.0316	[0.022-0.041] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.1051	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.0487	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.0838	[0.058-0.11] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-G	NR	2E-10		0.0566	[0.039-0.074] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-T	NR	2E-10		0.1052	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs680379-C	NR	2E-10		0.1052	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12969399	12969400	rs680379	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs680379-?	NR	5E-16	(S20Sum)	0.4	[0.3-0.5] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12969399	12969400	rs680379	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs680379-?	NR	1E-14	(N24S20)	0.38	[0.28-0.48] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12969399	12969400	rs680379	33437986	McGurk KA	2021-01-12	Hum Mol Genet	Heritability and family-based GWAS analyses of the N-acyl ethanolamine and ceramide plasma lipidome.	Ceramide levels	999 European ancestry individuals from 196 families	NR	20p12.1	NR	rs680379-?	NR	1E-10	(N24DS20)	0.3	[0.21-0.39] unit increase	Illumina [5280459] (imputed)	N
683	chr20	12969399	12969400	rs680379	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Glycerophospholipid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	20p12.1	SPTLC3	rs680379-A	0.365	2E-21	(Phosphatidylcholine acyl-alkyl C40:2)	0.0441	[0.035-0.053] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
683	chr20	12969399	12969400	rs680379	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	20p12.1	SPTLC3	rs680379-A	NR	6E-13		7.205	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
683	chr20	12969399	12969400	rs680379	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Sphingolipid levels	4,034 European ancestry individuals	NA	20p12.1	SPTLC3	rs680379-?	NR	2E-16	(levels)	0.0	[0.80-1.70] % increase	Illumina [NR] (imputed)	N
683	chr20	12969399	12969400	rs680379	19798445	Hicks AA	2009-10-02	PLoS Genet	Genetic determinants of circulating sphingolipid concentrations in European populations.	Sphingolipid levels	4,110 European ancestry individuals	NA	20p12.1	SPTLC3	rs680379-A	0.34	8E-15	(Cer24:0)	0.1	[0.08-0.13] mol % increase	Illumina [318237]	N
683	chr20	12969416	12969417	rs3848753	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848753-T	NR	7E-12		0.1007	[0.072-0.13] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12971344	12971345	rs3848754	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848754-A	NR	8E-12		0.079	[0.056-0.102] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12971436	12971437	rs3848755	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848755-T	NR	8E-12		0.0785	[0.056-0.101] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(41:2)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-G	NR	2E-10		0.105	[0.072-0.138] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-A	NR	2E-10		0.0532	[0.037-0.07] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-C	NR	2E-10		0.0542	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(38:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-T	NR	2E-10		0.1049	[0.073-0.137] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-C	NR	2E-10		0.0425	[0.029-0.056] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-T	NR	2E-10		0.0718	[0.05-0.094] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs686548-T	NR	2E-10		0.0675	[0.047-0.088] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12973520	12973521	rs686548	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	20p12.1	BTBD3, SPTLC3	rs686548-A	0.39	2E-14		7.62	z-score increase	Affymetrix [4312306] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	6E-15	(Sphingomyelin with acyl residue sum C24:1/Sphingomyelin with acyl residue sum C26:1)	0.317197	[0.24-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	6E-14	(Phosphatidylcholine with acyl-alkyl residue sum C40:2/Phosphatidylcholine with acyl-alkyl residue sum C42:3)	0.302724	[0.22-0.38] unit decrease	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	5E-16	(Hydroxysphingomyelin with acyl residue sum C24:1/Sphingomyelin with acyl residue sum C24:0)	0.333831	[0.25-0.41] unit decrease	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	5E-14	(Hydroxysphingomyelin with acyl residue sum C16:1/Sphingomyelin with acyl residue sum C16:1)	0.311299	[0.23-0.39] unit decrease	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	4E-16	(Phosphatidylcholine with acyl-alkyl residue sum C36:0/Phosphatidylcholine with acyl-alkyl residue sum C40:2)	0.326566	[0.25-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	2E-15	(Phosphatidylcholine with acyl-alkyl residue sum C40:2/Phosphatidylcholine with acyl-alkyl residue sum C42:2)	0.321292	[0.24-0.4] unit decrease	Illumina [up to 9281895] (imputed)	N
683	chr20	12973520	12973521	rs686548	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite ratios in chronic kidney disease	1,143 European ancestry cases	NA	20p12.1	BTBD3, SPTLC3	rs686548-T	NR	2E-12	(Phosphatidylcholine with acyl-alkyl residue sum C40:2/Phosphatidylcholine with acyl-alkyl residue sum C40:5)	0.28471	[0.21-0.36] unit decrease	Illumina [up to 9281895] (imputed)	N
683	chr20	12973616	12973617	rs6041755	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041755-A	NR	5E-11		0.053	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12973616	12973617	rs6041755	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041755-C	NR	5E-11		0.0783	[0.055-0.102] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12974301	12974302	rs13037956	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs13037956-A	NR	1E-25		0.0792	[0.064-0.094] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12974492	12974493	rs6074538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074538-T	NR	5E-11		0.0524	[0.037-0.068] unit decrease	Illumina [6720657] (imputed)	N
683	chr20	12974566	12974567	rs6078866	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078866-T	NR	6E-11		0.076	[0.053-0.099] unit increase	Illumina [6720657] (imputed)	N
683	chr20	12974664	12974665	rs6074539	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074539-T	NR	5E-11		0.0832	[0.058-0.108] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12983671	12983672	rs360538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360538-T	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12983671	12983672	rs360538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360538-A	NR	2E-12		0.0631	[0.045-0.081] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12983671	12983672	rs360538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360538-C	NR	2E-12		0.0755	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12983671	12983672	rs360538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360538-T	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12983671	12983672	rs360538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360538-T	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12984651	12984652	rs360537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360537-A	NR	2E-12		0.0612	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12984651	12984652	rs360537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360537-G	NR	2E-12		0.0612	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12984651	12984652	rs360537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360537-C	NR	2E-12		0.0612	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12984651	12984652	rs360537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360537-G	NR	2E-12		0.1539	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12984651	12984652	rs360537	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360537-T	NR	2E-12		0.0772	[0.056-0.099] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12986592	12986593	rs168621	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs168621-T	NR	1E-22		0.1507	[0.12-0.18] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12987643	12987644	rs360536	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360536-G	NR	2E-12		0.0379	[0.027-0.048] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12987939	12987940	rs184856	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs184856-T	NR	1E-13		0.064	[0.047-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12988886	12988887	rs360533	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360533-C	NR	2E-12		0.0568	[0.041-0.073] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12988903	12988904	rs360532	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360532-G	NR	2E-12		0.1139	[0.082-0.146] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12989662	12989663	rs189662	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs189662-G	NR	1E-13		0.0787	[0.058-0.099] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs3761895-T	NR	8E-12		0.0915597	[0.065-0.118] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs3761895-T	NR	1E-11		0.0917257	[0.065-0.118] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs3761895-T	NR	3E-15		0.107073	[0.08-0.134] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761895-A	NR	5E-12		0.0778	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761895-T	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761895-C	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761895-A	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761895-G	NR	5E-12		0.0888	[0.064-0.114] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990043	12990044	rs3761895	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O_36:1_[M+H]1+/Phosphatidylcholine-P_36:0_[M+H]1+/Phosphatidylethanolamine-O_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs3761895-T	NR	2E-12		0.092918	[0.067-0.119] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12990211	12990212	rs3761893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761893-T	NR	5E-12		0.0789	[0.057-0.101] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990211	12990212	rs3761893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761893-G	NR	5E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990211	12990212	rs3761893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761893-A	NR	5E-12		0.0419	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990211	12990212	rs3761893	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3761893-T	NR	5E-12		0.0792	[0.057-0.102] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990264	12990265	rs360530	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360530-G	NR	2E-12		0.0659	[0.047-0.084] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990363	12990364	rs360529	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360529-G	NR	2E-12		0.0612	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12990481	12990482	rs415347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs415347-A	NR	1E-11		0.0554	[0.04-0.071] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12990481	12990482	rs415347	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs415347-T	NR	1E-11		0.0414	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12991109	12991110	rs360527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360527-G	NR	2E-12		0.0399	[0.029-0.051] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12991109	12991110	rs360527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360527-A	NR	2E-12		0.0751	[0.054-0.096] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12991109	12991110	rs360527	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360527-G	NR	2E-12		0.0369	[0.027-0.047] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12991535	12991536	rs646814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_45:4_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs646814-C	NR	1E-10		0.115029	[0.08-0.15] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12991535	12991536	rs646814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_39:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs646814-C	NR	4E-10		0.112151	[0.077-0.147] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12991535	12991536	rs646814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin_37:1_[M+H]1+ levels	13,814 British ancestry individuals	NA	20p12.1		rs646814-C	NR	2E-10		0.115543	[0.08-0.151] unit increase	Affymetrix [87696910] (imputed)	N
684	chr20	12991535	12991536	rs646814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs646814-C	NR	1E-10		0.0797	[0.055-0.104] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12991535	12991536	rs646814	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs646814-T	NR	1E-10		0.0418	[0.029-0.055] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12991638	12991639	rs646334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs646334-C	NR	1E-10		0.0396	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12991638	12991639	rs646334	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs646334-C	NR	1E-10		0.0564	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-G	NR	9E-12		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-C	NR	9E-12		0.0663	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-T	NR	9E-12		0.0663	[0.047-0.085] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-G	NR	9E-12		0.1067	[0.076-0.137] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-C	NR	9E-12		0.0625	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-G	NR	9E-12		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-T	NR	9E-12		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-A	NR	9E-12		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12993517	12993518	rs3859618	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3859618-G	NR	9E-12		0.0371	[0.027-0.048] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12993879	12993880	rs615921	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs615921-G	NR	7E-11		0.1043	[0.073-0.136] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12993879	12993880	rs615921	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs615921-G	NR	7E-11		0.0725	[0.051-0.094] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-C	NR	6E-11		0.1548	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-T	NR	6E-11		0.0885	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-C	NR	6E-11		0.0503	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-T	NR	6E-11		0.0894	[0.063-0.116] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-T	NR	6E-11		0.0409	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-C	NR	6E-11		0.1081	[0.076-0.14] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-C	NR	6E-11		0.057	[0.04-0.074] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-A	NR	6E-11		0.0603	[0.042-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994001	12994002	rs6078878	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078878-C	NR	6E-11		0.0412	[0.029-0.054] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-C	NR	6E-11		0.0653	[0.046-0.085] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-A	NR	6E-11		0.0561	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-A	NR	6E-11		0.0894	[0.063-0.116] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-A	NR	6E-11		0.1204	[0.084-0.156] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-T	NR	6E-11		0.0828	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-A	NR	6E-11		0.0554	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-C	NR	6E-11		0.0338	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-G	NR	6E-11		0.0887	[0.062-0.115] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994043	12994044	rs6078880	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078880-G	NR	6E-11		0.0895	[0.063-0.116] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-G	NR	2E-11		0.073	[0.052-0.094] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-C	NR	2E-11		0.0382	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-T	NR	2E-11		0.0568	[0.04-0.073] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-C	NR	2E-11		0.0571	[0.04-0.074] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-T	NR	2E-11		0.0615	[0.043-0.08] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-T	NR	2E-11		0.1019	[0.072-0.132] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-A	NR	2E-11		0.0299	[0.021-0.039] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12994486	12994487	rs4814181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4814181-T	NR	2E-11		0.0648	[0.046-0.084] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-A	NR	8E-12		0.0914	[0.065-0.118] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-G	NR	8E-12		0.0607	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-A	NR	8E-12		0.0294	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-T	NR	8E-12		0.1735	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-G	NR	8E-12		0.0406	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-C	NR	8E-12		0.0914	[0.065-0.118] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-C	NR	8E-12		0.1581	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-T	NR	8E-12		0.0408	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12995112	12995113	rs3848762	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848762-G	NR	8E-12		0.078	[0.056-0.1] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-G	NR	2E-11		0.2166	[0.15-0.28] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-T	NR	2E-11		0.0361	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-C	NR	2E-11		0.0502	[0.036-0.065] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-T	NR	2E-11		0.0979	[0.069-0.126] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-T	NR	2E-11		0.0589	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-T	NR	2E-11		0.084	[0.06-0.109] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-C	NR	2E-11		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12997478	12997479	rs4813105	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs4813105-C	NR	2E-11		0.065	[0.046-0.084] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-A	NR	6E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-G	NR	6E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-G	NR	6E-12		0.0614	[0.044-0.079] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-A	NR	6E-12		0.1395	[0.1-0.179] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-C	NR	6E-12		0.0634	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-C	NR	6E-12		0.0747	[0.053-0.096] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-T	NR	6E-12		0.0919	[0.066-0.118] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999062	12999063	rs3843768	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843768-G	NR	6E-12		0.0233	[0.017-0.03] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-C	NR	8E-12		0.0606	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-T	NR	8E-12		0.0407	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-A	NR	8E-12		0.301	[0.21-0.39] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-T	NR	8E-12		0.0348	[0.025-0.045] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-G	NR	8E-12		0.0673	[0.048-0.087] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-A	NR	8E-12		0.0631	[0.045-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-T	NR	8E-12		0.0606	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-C	NR	8E-12		0.0606	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999537	12999538	rs3848764	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848764-C	NR	8E-12		0.0333	[0.024-0.043] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-T	NR	8E-12		0.0464	[0.033-0.06] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-C	NR	8E-12		0.059	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-T	NR	8E-12		0.0588	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-C	NR	8E-12		0.0405	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-G	NR	8E-12		0.1521	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-A	NR	8E-12		0.1405	[0.1-0.18] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-G	NR	8E-12		0.0294	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-A	NR	8E-12		0.0294	[0.021-0.038] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999562	12999563	rs3848765	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848765-T	NR	8E-12		0.0606	[0.043-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-T	NR	6E-11		0.0467	[0.033-0.061] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-G	NR	6E-11		0.0676	[0.047-0.088] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-G	NR	6E-11		0.0893	[0.063-0.116] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-T	NR	6E-11		0.0418	[0.029-0.054] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-C	NR	6E-11		0.0554	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-G	NR	6E-11		0.0465	[0.033-0.06] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-A	NR	6E-11		0.0337	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-G	NR	6E-11		0.0892	[0.063-0.116] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999708	12999709	rs6078882	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078882-G	NR	6E-11		0.0534	[0.037-0.069] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-C	NR	7E-11		0.0648	[0.045-0.084] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-C	NR	7E-11		0.05	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-G	NR	7E-11		0.0887	[0.062-0.115] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-C	NR	7E-11		0.0362	[0.025-0.047] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-T	NR	7E-11		0.0827	[0.058-0.108] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-A	NR	7E-11		0.0394	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-T	NR	7E-11		0.098	[0.069-0.127] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-T	NR	7E-11		0.0511	[0.036-0.066] unit increase	Illumina [6720657] (imputed)	N
684	chr20	12999834	12999835	rs6131420	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131420-C	NR	7E-11		0.0337	[0.024-0.044] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-C	NR	7E-11		0.0621	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-G	NR	7E-11		0.0488	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-A	NR	7E-11		0.0407	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-G	NR	7E-11		0.0426	[0.03-0.055] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-G	NR	7E-11		0.0617	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-C	NR	7E-11		0.0621	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-G	NR	7E-11		0.0627	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-T	NR	7E-11		0.0621	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000107	13000108	rs6131421	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6131421-C	NR	7E-11		0.0399	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-G	NR	5E-11		0.0465	[0.033-0.06] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-T	NR	5E-11		0.1351	[0.095-0.175] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-T	NR	5E-11		0.1186	[0.083-0.154] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-C	NR	5E-11		0.089	[0.062-0.116] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-T	NR	5E-11		0.1653	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-T	NR	6E-11		0.0536	[0.038-0.07] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-T	NR	5E-11		0.1072	[0.075-0.139] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000257	13000258	rs6074546	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6074546-C	NR	5E-11		0.0456	[0.032-0.059] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000306	13000307	rs6041769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041769-A	NR	5E-11		0.0392	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000306	13000307	rs6041769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041769-A	NR	5E-11		0.0592	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-C	NR	6E-11		0.0376	[0.026-0.049] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-G	NR	6E-11		0.0406	[0.028-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-T	NR	6E-11		0.044	[0.031-0.057] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-C	NR	6E-11		0.148	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-T	NR	6E-11		0.073	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-T	NR	6E-11		0.073	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-T	NR	6E-11		0.0561	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-C	NR	6E-11		0.0503	[0.035-0.065] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000348	13000349	rs6078883	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078883-C	NR	6E-11		0.0371	[0.026-0.048] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-C	NR	6E-11		0.0376	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-G	NR	6E-11		0.0731	[0.051-0.095] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-G	NR	6E-11		0.0391	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-C	NR	6E-11		0.0531	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-C	NR	6E-11		0.0675	[0.047-0.088] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-G	NR	6E-11		0.0883	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-G	NR	6E-11		0.0888	[0.062-0.115] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000351	13000352	rs6078884	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078884-C	NR	6E-11		0.056	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-C	NR	6E-11		0.062	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-G	NR	6E-11		0.0553	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-G	NR	6E-11		0.0464	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-C	NR	6E-11		0.0326	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-A	NR	6E-11		0.0351	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-G	NR	6E-11		0.1142	[0.08-0.148] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-G	NR	6E-11		0.0846	[0.059-0.11] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-A	NR	6E-11		0.0756	[0.053-0.098] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000376	13000377	rs6078885	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6078885-C	NR	6E-11		0.0889	[0.062-0.116] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-T	NR	6E-12		0.0813	[0.058-0.104] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-G	NR	6E-12		0.0532	[0.038-0.068] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-C	NR	6E-12		0.0727	[0.052-0.093] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-G	NR	6E-12		0.039	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-A	NR	6E-12		0.0499	[0.036-0.064] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-G	NR	6E-12		0.0754	[0.054-0.097] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-T	NR	6E-12		0.0406	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13000826	13000827	rs3843769	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843769-G	NR	6E-12		0.0602	[0.043-0.077] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.1492	[0.11-0.19] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-C	NR	8E-12		0.0589	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-C	NR	8E-12		0.0667	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.0723	[0.052-0.093] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.1449	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-T	NR	8E-12		0.0574	[0.041-0.074] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.0787	[0.056-0.101] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.0668	[0.048-0.086] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001116	13001117	rs3848766	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848766-A	NR	8E-12		0.2183	[0.16-0.28] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-G	NR	4E-13		0.0626	[0.046-0.079] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-T	NR	4E-13		0.0881	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-A	NR	4E-13		0.0431	[0.032-0.055] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-C	NR	4E-13		0.0805	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-G	NR	4E-13		0.0867	[0.063-0.11] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-C	NR	4E-13		0.0447	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-T	NR	4E-13		0.0881	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-T	NR	4E-13		0.1888	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001215	13001216	rs2327448	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327448-G	NR	4E-13		0.0805	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-A	NR	2E-12		0.0806	[0.058-0.103] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-C	NR	2E-12		0.0758	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-T	NR	2E-12		0.0424	[0.031-0.054] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-G	NR	2E-12		0.1854	[0.13-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-G	NR	2E-12		0.0434	[0.031-0.056] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-T	NR	2E-12		0.0523	[0.038-0.067] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-G	NR	2E-12		0.1544	[0.11-0.2] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-G	NR	2E-12		0.0727	[0.053-0.093] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001252	13001253	rs2876238	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2876238-T	NR	2E-12		0.0634	[0.046-0.081] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001291	13001292	rs360525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360525-C	NR	2E-12		0.0937	[0.067-0.12] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001291	13001292	rs360525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360525-A	NR	2E-12		0.0754	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001291	13001292	rs360525	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs360525-G	NR	2E-12		0.0627	[0.045-0.08] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-A	NR	4E-13		0.0479	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-A	NR	4E-13		0.1887	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-T	NR	4E-13		0.1887	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-A	NR	4E-13		0.1887	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-G	NR	4E-13		0.1889	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-T	NR	4E-13		0.0369	[0.027-0.047] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-G	NR	4E-13		0.1257	[0.092-0.16] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001363	13001364	rs2327447	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327447-T	NR	4E-13		0.0868	[0.063-0.11] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-A	NR	4E-13		0.1891	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-G	NR	4E-13		0.0717	[0.052-0.091] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-C	NR	4E-13		0.076	[0.055-0.097] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-T	NR	4E-13		0.0773	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-G	NR	4E-13		0.0803	[0.059-0.102] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-A	NR	4E-13		0.1889	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-T	NR	4E-13		0.0635	[0.046-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001587	13001588	rs2327445	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs2327445-G	NR	4E-13		0.0665	[0.048-0.085] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-T	NR	9E-12		0.1145	[0.082-0.147] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-T	NR	9E-12		0.1149	[0.082-0.148] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-C	NR	9E-12		0.1671	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-A	NR	9E-12		0.0751	[0.054-0.097] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-T	NR	9E-12		0.2209	[0.16-0.28] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-T	NR	9E-12		0.0404	[0.029-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(32:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-G	NR	9E-12		0.1149	[0.082-0.148] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13001714	13001715	rs3966739	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3966739-G	NR	9E-12		0.041	[0.029-0.053] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13008816	13008817	rs57362538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs57362538-A	NR	4E-11		0.063	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13008816	13008817	rs57362538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs57362538-T	NR	4E-11		0.0471	[0.033-0.061] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13008816	13008817	rs57362538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs57362538-G	NR	4E-11		0.063	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13008816	13008817	rs57362538	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs57362538-G	NR	4E-11		0.0967	[0.068-0.126] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13015757	13015758	rs6109661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109661-C	NR	7E-11		0.1147	[0.08-0.149] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13015974	13015975	rs17226320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs17226320-G	NR	5E-22		0.0552	[0.044-0.066] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13015974	13015975	rs17226320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs17226320-C	NR	4E-22		0.0511	[0.041-0.061] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13015974	13015975	rs17226320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs17226320-T	NR	4E-22		0.1211	[0.097-0.146] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13015974	13015975	rs17226320	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs17226320-G	NR	4E-22		0.0903	[0.072-0.109] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-C	NR	1E-24		0.0611	[0.049-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-T	NR	1E-24		0.0821	[0.066-0.098] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-T	NR	1E-24		0.0822	[0.067-0.098] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-G	NR	2E-24		0.0772	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-C	NR	1E-24		0.0969	[0.078-0.116] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-T	NR	1E-24		0.0536	[0.043-0.064] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-G	NR	1E-24		0.0773	[0.063-0.092] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-T	NR	1E-24		0.0538	[0.043-0.064] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-T	NR	1E-24		0.0772	[0.062-0.092] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13027127	13027128	rs1367742	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs1367742-C	NR	1E-24		0.0857	[0.069-0.102] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13029436	13029437	rs3789353	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy in Alzheimer's disease	821 European ancestry individuals	NA		SPTLC3	rs3789353-A	0.32	7E-6		0.1	[0.05-0.14] unit decrease	Illumina [1679420] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-T	NR	9E-11		0.042	[0.029-0.055] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-T	NR	1E-10		0.0597	[0.042-0.078] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-G	NR	9E-11		0.0746	[0.052-0.097] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-T	NR	1E-10		0.0563	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-T	NR	9E-11		0.082	[0.057-0.107] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-G	NR	1E-10		0.0369	[0.026-0.048] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-C	NR	1E-10		0.0597	[0.042-0.078] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-T	NR	1E-10		0.0532	[0.037-0.069] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-G	NR	1E-10		0.0462	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13032093	13032094	rs62201721	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs62201721-A	NR	9E-11		0.082	[0.057-0.107] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-C	NR	5E-11		0.0858	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-G	NR	5E-11		0.0404	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-T	NR	5E-11		0.0404	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-T	NR	5E-11		0.0899	[0.063-0.117] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-A	NR	5E-11		0.0924	[0.065-0.12] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-C	NR	5E-11		0.0222	[0.016-0.029] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-T	NR	5E-11		0.1056	[0.074-0.137] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-T	NR	5E-11		0.1155	[0.081-0.15] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-T	NR	5E-11		0.1267	[0.089-0.165] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13036799	13036800	rs6041821	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041821-C	NR	5E-11		0.0496	[0.035-0.064] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-T	NR	6E-10		0.0599	[0.041-0.079] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-T	NR	6E-10		0.0682	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-C	NR	6E-10		0.0355	[0.024-0.047] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-G	NR	6E-10		0.0995	[0.068-0.131] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-A	NR	6E-10		0.0542	[0.037-0.071] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-G	NR	6E-10		0.073	[0.05-0.096] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-C	NR	6E-10		0.0364	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-A	NR	6E-10		0.0551	[0.038-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-C	NR	6E-10		0.0395	[0.027-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037088	13037089	rs8116374	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs8116374-G	NR	6E-10		0.0507	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-G	NR	5E-11		0.0663	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-A	NR	5E-11		0.0763	[0.054-0.099] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-C	NR	5E-11		0.0627	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-T	NR	5E-11		0.118	[0.083-0.153] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-T	NR	5E-11		0.0885	[0.062-0.115] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-G	NR	5E-11		0.0628	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-C	NR	5E-11		0.0398	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-T	NR	5E-11		0.0466	[0.033-0.061] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-C	NR	5E-11		0.0462	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037680	13037681	rs6041824	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041824-A	NR	5E-11		0.0532	[0.037-0.069] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-A	NR	5E-11		0.0573	[0.04-0.074] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-G	NR	5E-11		0.0621	[0.043-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-G	NR	5E-11		0.0593	[0.042-0.077] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-C	NR	5E-11		0.0824	[0.058-0.107] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-A	NR	5E-11		0.0684	[0.048-0.089] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-G	NR	5E-11		0.0841	[0.059-0.109] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-C	NR	5E-11		0.0589	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-G	NR	5E-11		0.0851	[0.06-0.111] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-T	NR	5E-11		0.095	[0.067-0.123] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13037683	13037684	rs6041825	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041825-G	NR	5E-11		0.0626	[0.044-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13038722	13038723	rs6041826	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041826-T	NR	5E-11		0.0591	[0.041-0.077] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13038722	13038723	rs6041826	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041826-T	NR	5E-11		0.083	[0.058-0.108] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13038722	13038723	rs6041826	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6041826-C	NR	5E-11		0.0871	[0.061-0.113] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-G	NR	6E-10		0.0685	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-C	NR	6E-10		0.0618	[0.042-0.081] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-C	NR	6E-10		0.0685	[0.047-0.09] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-C	NR	6E-10		0.0805	[0.055-0.106] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-A	NR	6E-10		0.0409	[0.028-0.054] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-A	NR	6E-10		0.0685	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-C	NR	6E-10		0.0685	[0.047-0.09] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-T	NR	6E-10		0.0381	[0.026-0.05] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-A	NR	6E-10		0.0741	[0.051-0.098] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039021	13039022	rs891660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891660-A	NR	6E-10		0.0485	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-C	NR	6E-10		0.0374	[0.026-0.049] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-A	NR	6E-10		0.0625	[0.043-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-G	NR	6E-10		0.0842	[0.058-0.111] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-G	NR	6E-10		0.163	[0.11-0.21] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-T	NR	6E-10		0.079	[0.054-0.104] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-C	NR	6E-10		0.0729	[0.05-0.096] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-C	NR	6E-10		0.049	[0.034-0.064] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-T	NR	6E-10		0.1025	[0.07-0.135] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-C	NR	6E-10		0.0397	[0.027-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039028	13039029	rs891661	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs891661-C	NR	6E-10		0.0362	[0.025-0.048] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039521	13039522	rs6514359	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514359-C	NR	1E-10		0.0475	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039521	13039522	rs6514359	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514359-G	NR	1E-10		0.071	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039521	13039522	rs6514359	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514359-T	NR	1E-10		0.0552	[0.038-0.072] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039662	13039663	rs6514360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514360-C	NR	1E-10		0.0459	[0.032-0.06] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039662	13039663	rs6514360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514360-T	NR	1E-10		0.0473	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039662	13039663	rs6514360	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514360-A	NR	1E-10		0.0754	[0.052-0.098] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039809	13039810	rs6514361	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514361-T	NR	1E-10		0.0507	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039809	13039810	rs6514361	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514361-T	NR	1E-10		0.0732	[0.051-0.096] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039809	13039810	rs6514361	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6514361-C	NR	1E-10		0.0478	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039961	13039962	rs6109675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109675-A	NR	7E-11		0.0403	[0.028-0.052] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039961	13039962	rs6109675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109675-G	NR	7E-11		0.0774	[0.054-0.101] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039961	13039962	rs6109675	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109675-A	NR	7E-11		0.0878	[0.062-0.114] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039996	13039997	rs6105029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6105029-T	NR	6E-11		0.0776	[0.054-0.101] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13039996	13039997	rs6105029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6105029-C	NR	6E-11		0.0373	[0.026-0.048] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13039996	13039997	rs6105029	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6105029-C	NR	7E-11		0.0549	[0.038-0.071] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13040211	13040212	rs6109676	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109676-A	NR	7E-11		0.0525	[0.037-0.068] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13040211	13040212	rs6109676	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109676-T	NR	7E-11		0.0525	[0.037-0.068] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0827	[0.058-0.108] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-A	NR	7E-11		0.0558	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0525	[0.037-0.068] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0597	[0.042-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0612	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0854	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-A	NR	7E-11		0.0854	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-T	NR	7E-11		0.0854	[0.06-0.111] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13041632	13041633	rs6109678	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109678-C	NR	7E-11		0.0307	[0.021-0.04] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13042423	13042424	rs116901113	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SPTLC3	rs116901113-?	NR	1E-8		1.08789	[NR] unit decrease	Affymetrix [NR] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-C	NR	7E-11		0.0607	[0.042-0.079] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-C	NR	7E-11		0.0552	[0.039-0.072] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-T	NR	7E-11		0.0833	[0.058-0.108] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-G	NR	7E-11		0.0561	[0.039-0.073] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-T	NR	7E-11		0.0991	[0.069-0.129] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-C	NR	7E-11		0.0991	[0.069-0.129] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13042989	13042990	rs6109679	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109679-C	NR	7E-11		0.04	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-G	NR	3E-10		0.0286	[0.02-0.037] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-G	NR	3E-10		0.0721	[0.05-0.094] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-A	NR	3E-10		0.1342	[0.093-0.176] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-G	NR	3E-10		0.0507	[0.035-0.066] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-A	NR	3E-10		0.0476	[0.033-0.062] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-T	NR	3E-10		0.0415	[0.029-0.054] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-A	NR	3E-10		0.0715	[0.049-0.094] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-T	NR	3E-10		0.0215	[0.015-0.028] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13045948	13045949	rs7269660	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7269660-T	NR	3E-10		0.1047	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046036	13046037	rs7264291	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7264291-A	NR	2E-10		0.0411	[0.028-0.054] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046036	13046037	rs7264291	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7264291-T	NR	2E-10		0.0821	[0.057-0.108] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046036	13046037	rs7264291	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7264291-A	NR	2E-10		0.0673	[0.047-0.088] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-T	NR	4E-11		0.0909	[0.064-0.118] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-T	NR	4E-11		0.0496	[0.035-0.064] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-A	NR	4E-11		0.0637	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-C	NR	4E-11		0.0327	[0.023-0.042] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-A	NR	4E-11		0.0615	[0.043-0.08] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-T	NR	4E-11		0.04	[0.028-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-G	NR	4E-11		0.0738	[0.052-0.096] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-A	NR	4E-11		0.0629	[0.044-0.082] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046103	13046104	rs56155938	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs56155938-C	NR	4E-11		0.0637	[0.045-0.083] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046317	13046318	rs34899016	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs34899016-C	NR	2E-12		0.0613	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046317	13046318	rs34899016	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs34899016-C	NR	2E-12		0.0613	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046317	13046318	rs34899016	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs34899016-T	NR	2E-12		0.0429	[0.031-0.055] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046590	13046591	rs6109680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109680-G	NR	7E-11		0.0795	[0.056-0.103] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13046590	13046591	rs6109680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109680-G	NR	7E-11		0.0467	[0.033-0.061] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046590	13046591	rs6109680	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109680-C	NR	7E-11		0.0558	[0.039-0.073] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13046590	13046591	rs6109680	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	20p12.1	SPTLC3, ISM1, ISM1-AS1, TASP1	rs6109680-G	NR	3E-6	(daytime napping)	0.6066	[0.35-0.86] unit increase	Affymetrix [7141204] (imputed)	N
684	chr20	13047503	13047504	rs6109681	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109681-C	NR	7E-11		0.0834	[0.058-0.108] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13047503	13047504	rs6109681	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109681-C	NR	7E-11		0.0445	[0.031-0.058] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13047503	13047504	rs6109681	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs6109681-G	NR	7E-11		0.0512	[0.036-0.067] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13049531	13049532	rs3848767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848767-C	NR	8E-12		0.0652	[0.047-0.084] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13049531	13049532	rs3848767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848767-C	NR	8E-12		0.0774	[0.055-0.1] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13049531	13049532	rs3848767	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3848767-C	NR	8E-12		0.0403	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-T	NR	3E-10		0.1346	[0.093-0.176] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-G	NR	3E-10		0.0511	[0.035-0.067] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-A	NR	2E-10		0.1047	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-A	NR	3E-10		0.1462	[0.1-0.19] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-T	NR	2E-10		0.1047	[0.072-0.137] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-C	NR	3E-10		0.135	[0.093-0.177] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-G	NR	3E-10		0.0447	[0.031-0.059] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-G	NR	3E-10		0.1056	[0.073-0.138] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13050265	13050266	rs7268756	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs7268756-G	NR	3E-10		0.0604	[0.042-0.079] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(43:2)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-C	NR	6E-12		0.0389	[0.028-0.05] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-C	NR	6E-12		0.0416	[0.03-0.054] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(39:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-G	NR	6E-12		0.0408	[0.029-0.052] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M-CH3]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-G	NR	6E-12		0.1379	[0.099-0.177] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-T	NR	6E-12		0.059	[0.042-0.076] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylcholine-O(36:1)_[M+H]1+/Phosphatidylethanolamine-O(39:1)_[M+H]1+/Phosphatidylcholine-P(36:0)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-A	NR	6E-12		0.0724	[0.052-0.093] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(41:2)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-T	NR	6E-12		0.1005	[0.072-0.129] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:1)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-T	NR	6E-12		0.044	[0.031-0.057] unit increase	Illumina [6720657] (imputed)	N
684	chr20	13052001	13052002	rs3843770	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Ceramide(40:0)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	20p12.1		rs3843770-T	NR	6E-12		0.0514	[0.037-0.066] unit decrease	Illumina [6720657] (imputed)	N
684	chr20	13052670	13052671	rs2073302	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	20p12.1	SPTLC3, ISM1, ISM1-AS1, TASP1	rs2073302-A	NR	3E-7	(daytime napping duration)	0.08531	[0.053-0.118] unit decrease	Affymetrix [7141204] (imputed)	N
685	chr20	13123732	13123733	rs17190927	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	20p12.1	SPTLC3	rs17190927-?	NR	8E-7	(SPTLC3)			Affymetrix [702866]	N
685	chr20	13148151	13148152	rs2144134	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	20p12.1	LOC100130692, SPTLC3	rs2144134-G	NR	4E-6		0.09	[NR] unit decrease	Affymetrix [706791]	N
685	chr20	13179269	13179270	rs75373697	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p12.1		rs75373697-A	0.040508	5E-8		0.0299415	[0.019-0.041] unit decrease	Illumina [13479295] (imputed)	N
685	chr20	13222857	13222858	rs1407335	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20p12.1	C20orf82	rs1407335-A		7E-6		0.04	[0.02-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
685	chr20	13229325	13229326	rs6105057	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	20p12.1	ISM1	rs6105057-?		2E-6	(overall survival)	2.2	[1.59-3.04]	Illumina [729737]	N
686	chr20	13257469	13257470	rs6041981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p12.1		rs6041981-?	NR	2E-9				NR [~ 8900000] (imputed)	N
686	chr20	13257469	13257470	rs6041981	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p12.1	NR	rs6041981-A	0.0885271	2E-19		0.0502351	[0.039-0.061] unit increase	NR [19129689] (imputed)	N
686	chr20	13259044	13259045	rs911641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.1		rs911641-G	NR	7E-13		0.0095	[0.007-0.012] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
686	chr20	13259044	13259045	rs911641	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.1		rs911641-?	NR	3E-17				NR [~ 8900000] (imputed)	N
686	chr20	13264553	13264554	rs17191004	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p12.1	NR	rs17191004-A	0.180481	9E-14		0.0310641	[0.023-0.039] unit decrease	NR [19129689] (imputed)	N
686	chr20	13296911	13296912	rs1223271	19915575	Simon-Sanchez J	2009-11-15	Nat Genet	Genome-wide association study reveals genetic risk underlying Parkinson's disease.	Parkinson's disease	1,713 European ancestry cases, 3,978 European ancestry controls	3,361 European ancestry cases, 4,573 European ancestry controls	20p12.1	C20orf82	rs1223271-G	0.87	5E-6		1.18	[NR]	Illumina [463185]	N
686	chr20	13340137	13340138	rs4444613	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex, smoking status  and plaque)	3,906 Finnish ancestry individuals	NA	20p12.1		rs4444613-A	0.087	1E-7				Illumina [NR] (imputed)	N
687	chr20	13415446	13415447	rs6079065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p12.1		rs6079065-?	NR	8E-18				NR [~ 8900000] (imputed)	N
688	chr20	13507871	13507872	rs910969	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	20p12.1	NR	rs910969-?	NR	4E-6		0.0409	[0.023-0.058] unit decrease	Illumina [at least 560000] (imputed)	N
688	chr20	13514433	13514434	rs2073323	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	20p12.1	TASP1	rs2073323-?	NR	6E-14		1.129	[1.094-1.165]	Illumina [13537761] (imputed)	N
688	chr20	13555709	13555710	rs35954536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs35954536-A	0.02613	1E-8	(FHL1)	0.005177	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	4E-12	(TPM4)	0.07706	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	3E-10	(FHL1)	0.004065	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	2E-8	(PRELP)	0.06763	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	2E-8	(FBLN1)	0.008598	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	2E-10	(LPP)	0.00414	NR unit increase	Illumina [1671387] (imputed)	N
688	chr20	13564089	13564090	rs12106089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs12106089-A	0.05052	1E-8	(CSRP1)	0.01508	NR unit increase	Illumina [1671387] (imputed)	N
689	chr20	13635111	13635112	rs61176212	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	20p12.1	NR	rs61176212-A	0.007	2E-7		5.3	[2.82-9.96]	Illumina [8672852] (imputed)	N
689	chr20	13696128	13696129	rs6042314	23358156	Benyamin B	2013-01-29	Mol Psychiatry	Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.	Intelligence (childhood)	12,441 European ancestry children	5,548 European ancestry children	20p12.1	NR	rs6042314-C	0.748	7E-6		0.058	[0.033-0.083] unit increase	Affymetrix, Illumina [138093] (imputed)	N
690	chr20	13808425	13808426	rs2876363	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Lack of behavioral control	3,268 European ancestry individuals	NA	20p12.1	NR	rs2876363-T	0.1613	4E-6		0.1486	[0.086-0.211] unit decrease	Illumina [8348463] (imputed)	N
690	chr20	13812871	13812872	rs4814263	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	SEL1L2	rs4814263-?	NR	2E-6	(cotinine)	0.17177914	[0.1-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
691	chr20	13933457	13933458	rs138377073	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	20p12.1		rs138377073-?	NR	6E-6		0.2	[0.11-0.29] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
691	chr20	13943049	13943050	rs73097908	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SEL1L2	rs73097908-?	NR	7E-10	(male)	3.78172	[NR] unit decrease	Affymetrix [NR] (imputed)	N
692	chr20	14119575	14119576	rs765488291	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20p12.1	MACROD2	rs765488291-A	0.0011	6E-6		1.4457	[0.82-2.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
692	chr20	14119575	14119576	rs765488291	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	20p12.1	MACROD2	rs765488291-A	0.0016	1E-6		1.6164	[0.96-2.27] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
694	chr20	14309951	14309952	rs761998	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Mood disorder in prion disease	Up to 170 cases	NA	20p12.1	FLRT3	rs761998-?	0.352	7E-6		2.86	[1.82-4.55]	Illumina [518938]	N
694	chr20	14327898	14327899	rs6079395	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	20p12.1	MACROD2	rs6079395-A	0.49	7E-6	(Fibrosis)	0.92	[NR] unit increase	Illumina [324623]	N
694	chr20	14377352	14377353	rs148441079	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	20p12.1		rs148441079-T	0.0134	9E-6		2.852	[1.796-4.53]	Affymetrix [7975321] (imputed)	N
694	chr20	14388214	14388215	rs6110278	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	20p12.1	NR	rs6110278-T	NR	4E-7		0.01	[0.005-0.013] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
695	chr20	14431462	14431463	rs8122234	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.1	Intergenic	rs8122234-A	0.4889	2E-9	(MTAG)	0.0078	[0.0053-0.0103] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
695	chr20	14467386	14467387	rs13038351	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p12.1	FLRT3	rs13038351-A	0.783125	1E-43	(FLRT3, 13123_3_3)	0.40416396	[0.35-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
695	chr20	14475756	14475757	rs6079463	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	20p12.1	NR	rs6079463-?		2E-8				NR [8956949]	N
695	chr20	14475756	14475757	rs6079463	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	20p12.1	NR	rs6079463-G	0.19499999999999995	8E-7		1.0970205	[NR]	NR [9372253] (imputed)	N
695	chr20	14493209	14493210	rs2068756	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	20p12.1	NR	rs2068756-?		3E-8				NR [520857]	N
695	chr20	14496589	14496590	rs406307	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	MACROD2	rs406307-?	NR	4E-7	(TAG 56:2)	0.2368627	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
695	chr20	14501140	14501141	rs6079469	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	20p12.1	FLRT3	rs6079469-A	NR	1E-9		1.09	[1.07-1.11]	Affymetrix [up to 49134253] (imputed)	N
695	chr20	14513686	14513687	rs1569997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p12.1	NR	rs1569997-A	NR	6E-13		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
696	chr20	14624597	14624598	rs73100693	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	20p12.1	MACROD2	rs73100693-A	0.222008	3E-8		0.0495	[0.032-0.067] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
696	chr20	14658869	14658870	rs11087101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p12.1	NR	rs11087101-T	NR	3E-21		0.0258	[0.021-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
696	chr20	14672176	14672177	rs6034011	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	20p12.1	MACROD2	rs6034011-C	0.32	5E-9		5.83	z-score increase	Affymetrix [4312306] (imputed)	N
696	chr20	14677649	14677650	rs6135224	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20p12.1	MACROD2	rs6135224-A	0.6888	1E-7		0.002	[0.0012-0.0028] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
696	chr20	14677787	14677788	rs1041606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20p12.1		rs1041606-T	NR	7E-25		0.0252	[0.02-0.03] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
696	chr20	14677787	14677788	rs1041606	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20p12.1	MACROD2	rs1041606-T	0.2319	1E-9		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
696	chr20	14678134	14678135	rs6135225	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLRT3	5,362 Icelandic ancestry individuals	NA	20p12.1		rs6135225-T	0.2874	2E-290		0.65933	[0.62-0.69] unit decrease	Illumina [7506463] (imputed)	N
696	chr20	14679496	14679497	rs6135226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20p12.1		rs6135226-G	NR	7E-9		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
697	chr20	14681800	14681801	rs1932952	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p12.1		rs1932952-C	NR	4E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
697	chr20	14681800	14681801	rs1932952	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20p12.1	MACROD2-IT1	rs1932952-G	0.691181	1E-39		0.00732046	[0.0062-0.0084] unit decrease	Affymetrix [13995440] (imputed)	N
697	chr20	14681800	14681801	rs1932952	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p12.1	NR	rs1932952-C	0.301	3E-57	(Leucine-rich repeat transmembrane protein FLRT3, FLRT3.13123.3.3)	0.41	[0.35-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
697	chr20	14689145	14689146	rs11908097	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p12.1	FLRT3	rs11908097-C	0.251	3E-57	(Leucine-rich repeat transmembrane protein FLRT3, FLRT3.13123.3.3)	0.44	[0.38-0.5] unit increase	Affymetrix [10572788] (imputed)	N
697	chr20	14691568	14691569	rs73104513	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20p12.1		rs73104513-C	0.87	2E-9		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
697	chr20	14693088	14693089	rs6110404	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	20p12.1	NA	rs6110404-T		7E-11		0.013206	[0.0092-0.0172] unit increase	Illumina [13288253] (imputed)	N
697	chr20	14702914	14702915	rs6034019	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.1	Intergenic	rs6034019-A	0.3145	2E-12	(MTAG)	0.01	[0.0073-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
697	chr20	14702914	14702915	rs6034019	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20p12.1	MACROD2	rs6034019-A	NR	4E-8		0.017595239	[0.011-0.024] unit decrease	Affymetrix [NR]	N
697	chr20	14713889	14713890	rs1932945	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20p12.1	Intergenic	rs1932945-A	0.3169	4E-9	(MTAG)	0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
697	chr20	14728971	14728972	rs12481462	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	20p12.1		rs12481462-T	0.3727	4E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
697	chr20	14731056	14731057	rs117831144	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20p12.1	MACROD2	rs117831144-C	0.97031	3E-8		0.0356128	[0.023-0.048] unit increase	NR [16516521] (imputed)	N
697	chr20	14739702	14739703	rs181932180	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	20p12.1	MACROD2	rs181932180-A	0.9968	8E-6		0.4024	[0.23-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
697	chr20	14747470	14747471	rs4141463	20663923	Anney R	2010-07-27	Hum Mol Genet	A genome-wide scan for common alleles affecting risk for autism.	Autism	1,230 European ancestry child cases from 1,217 families, 155 African American Asian or Latino child cases from 152 families, 1,880 controls	783 European ancestry child cases from 440 families, 303 child cases from 155 families, 1,965 European, African American and other ancestry controls	20p12.1	MACROD2	rs4141463-?	0.57	4E-8	(Str)	1.37	[1.22-1.52]	Illumina [842348]	N
697	chr20	14761709	14761710	rs6074798	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p12.1	MACROD2	rs6074798-A	NR	6E-11		6.532	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
697	chr20	14797571	14797572	rs6042935	27098658	Muller-Calleja N	2016-04-21	Thromb Haemost	Antiphospholipid antibodies in a large population-based cohort: genome-wide associations and effects on monocyte gene expression.	Presence of antiphospholipid antibodies	4,163 German ancestry individuals	NA	20p12.1	MACROD2	rs6042935-?	NR	3E-9	(Anti-?2GPI Domain 1 IgG, 99th percentile)	1.8174	[1.22-2.42]	Affymetrix [at least 662405]	N
697	chr20	14804963	14804964	rs743134	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p12.1	MACROD2	rs743134-A	NR	3E-11		6.64	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
698	chr20	14811476	14811477	rs401599	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20p12.1	Intergenic	rs401599-A	0.622	9E-10	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
698	chr20	14836266	14836273	rs71190156	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	20p12.1	NR	rs71190156-?		3E-8				NR [520857]	N
698	chr20	14836266	14836273	rs71190156	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder	46,350 individuals	NA	20p12.1	NR	rs71190156-?		3E-8				NR [9087710]	N
698	chr20	14836266	14836273	rs71190156	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	20p12.1	MACROD2	rs71190156-G	0.519	4E-8		1.0741138	[NR]	Illumina [9112387] (imputed)	N
698	chr20	14844017	14844018	rs442467	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (age at first cigarette)	up to 146,117 European ancestry control	NA	20p12.1	MACROD2	rs442467-C	0.676	7E-11		0.0279	[0.02-0.036] unit increase	Illumina [~ 250000] (imputed)	N
698	chr20	14863657	14863658	rs984968	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	20p12.1	NR	rs984968-?		7E-6		1.52	[NR]	Illumina [NR] (imputed)	N
698	chr20	14902521	14902522	rs6135309	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	20p12.1	MACROD2	rs6135309-C	0.29	4E-6		1.2820514	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
698	chr20	14908740	14908741	rs716316	26915486	Adams JN	2016-02-23	Gene	Genetic analysis of advanced glycation end products in the DHS MIND study.	Advanced glycation end-product levels	399 diabetes cases, 107 non-diabetes controls from 240 families	NA	20p12.1	MACROD2	rs716316-?	NR	8E-6		0.129	[0.074-0.184] unit increase	Affymetrix [371951]	N
698	chr20	14911682	14911683	rs11087114	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV infection	682 Black non-Hispanic HIV-positive women	NA	20p12.1	MACROD2	rs11087114-A	NR	1E-6		0.02726	[NR] unit increase	Illumina [1124301]	N
698	chr20	14914620	14914621	rs2423852	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.1	Intergenic	rs2423852-A	0.4472	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
698	chr20	14917047	14917048	rs1408430	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p12.1		rs1408430-C	0.7193	7E-10		0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
698	chr20	14928944	14928945	rs13037508	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (time to childhood onset) x early life tobacco smoke interaction	3,187 European ancestry exposed individuals, 5,086 European ancestry unexposed individuals	NA	20p12.1	MACROD2	rs13037508-A	0.63	5E-7		1.48	[1.27-1.72]	Illumina [2110000] (imputed)	N
698	chr20	14928944	14928945	rs13037508	31379025	Sugier PE	2019-08-04	Clin Exp Allergy	Genome-wide interaction study of early-life smoking exposure on time-to-asthma onset in childhood.	Asthma (childhood onset)	5,086 European ancestry individuals	NA	20p12.1	MACROD2	rs13037508-A	0.63	8E-6		0.81	[0.74-0.89]	Illumina [2110000] (imputed)	N
699	chr20	14967078	14967079	rs430086	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	20p12.1	MACROD2	rs430086-A	NR	3E-7	(Cases)	0.16	[-0.1536-0.4736] unit increase	Illumina [6900000] (imputed)	N
699	chr20	15056880	15056881	rs403362	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	20p12.1	MACROD2	rs403362-A	0.298682	6E-6		0.353636	[0.2-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
699	chr20	15057763	15057764	rs8121203	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	20p12.1	NR	rs8121203-?	NR	2E-6	(AA)	27.57	[25.47-29.67]	Illumina [905956]	N
700	chr20	15111137	15111138	rs6110524	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	20p12.1	NR	rs6110524-?	NR	2E-8	(Co-Dominant, Mixture cure model)	7.56	[3.75-15.27]	Illumina [810622]	N
700	chr20	15112879	15112880	rs150246290	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (transposition of the great arteries)	399 European ancestry cases, 8,486 European ancestry controls	NA	20p12.1	MACROD2	rs150246290-?		1E-10		3.78	[2.51-5.64]	Affymetrix, Illumina [9216527] (imputed)	N
700	chr20	15118224	15118225	rs71331807	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20p12.1	NR	rs71331807-A	0.064	8E-7		0.356052	[0.22-0.5] unit decrease	Illumina [~ 6600000] (imputed)	N
700	chr20	15120743	15120744	rs11087123	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders	543 European ancestry female cases, 1,116 European ancestry female controls	NA	20p12.1	MACROD2	rs11087123-A	0.738	4E-6		0.12	[0.069-0.171] unit decrease	Illumina [6150213] (imputed)	N
700	chr20	15121080	15121081	rs1967749	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20p12.1	NR	rs1967749-C	0.111	3E-6	(Females)	0.365494	[0.21-0.52] unit decrease	Illumina [~ 6600000] (imputed)	N
700	chr20	15121080	15121081	rs1967749	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20p12.1	NR	rs1967749-C	0.107	1E-6		0.283179	[0.17-0.4] unit decrease	Illumina [~ 6600000] (imputed)	N
700	chr20	15121080	15121081	rs1967749	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20p12.1	NR	rs1967749-C	0.107	8E-6		0.238423	[0.13-0.34] unit decrease	Illumina [~ 6600000] (imputed)	N
700	chr20	15143805	15143806	rs4813172	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	20p12.1		rs4813172-?	NR	6E-6		1.37	[1.196-1.57]	Affymetrix [7975321] (imputed)	N
700	chr20	15177579	15177580	rs199307	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.1	MACROD2	rs199307-G	0.241	8E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
701	chr20	15227635	15227636	rs7267421	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	20p12.1	MACROD2	rs7267421-?		8E-6				Illumina [859311]	N
701	chr20	15245577	15245578	rs145250558	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	20p12.1	NR	rs145250558-C	0.01536	4E-6		0.5732	[0.33-0.81] unit decrease	Illumina [10677593] (imputed)	N
701	chr20	15273895	15273896	rs6034146	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	20p12.1	MACROD2	rs6034146-C	NR	3E-8		0.714	[0.47-0.96] unit increase	Affymetrix [14661600] (imputed)	N
701	chr20	15294918	15294919	rs6043200	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20p12.1	Intergenic	rs6043200-A	0.3277	2E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
701	chr20	15294918	15294919	rs6043200	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20p12.1	Intergenic	rs6043200-G	0.6723	1E-8		0.0138	[0.0091-0.0185] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
701	chr20	15305257	15305258	rs6135385	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20p12.1	Intergenic	rs6135385-A	0.2176	9E-9	(MTAG)	0.0125	[0.0082-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
701	chr20	15323281	15323282	rs2423942	22633400	Kosova G	2012-05-23	Am J Hum Genet	Genome-wide association study identifies candidate genes for male fertility traits in humans.	Male fertility	269 Hutterite males	NA	20p12.1	MACROD2	rs2423942-T	0.33	9E-6	(Family size, recessive model)			Affymetrix [248210]	N
702	chr20	15335753	15335754	rs6110577	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	20p12.1	C20orf133	rs6110577-C	0.16	5E-6		1.4	[1.21-1.61]	Illumina [457251]	N
702	chr20	15345663	15345664	rs2423958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20p12.1	Intergenic	rs2423958-C	0.5301	2E-8		0.011	[0.0071-0.0149] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
702	chr20	15359411	15359412	rs6043241	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	C20orf23	rs6043241-?	NR	4E-6	(TAG 56:2)	0.47943935	[0.27-0.68] unit increase	Affymetrix [at least 2500000] (imputed)	N
702	chr20	15435202	15435203	rs10485526	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Medial orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p12.1	MACROD2	rs10485526-?		4E-6				Illumina [4322238] (imputed)	N
703	chr20	15538743	15538744	rs1035177	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Holdemania abundance in stool	5,959 Finnish ancestry individuals	NA	20p12.1		rs1035177-A	0.153965	5E-8		0.0912705	[0.059-0.124] unit increase	Illumina [7980478] (imputed)	N
703	chr20	15552810	15552811	rs1233754	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	20p12.1	MACROD2	rs1233754-?	0.0274	6E-6		10.44	[NR]	Affymetrix [559609]	N
703	chr20	15580282	15580283	rs465757	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	20p12.1	NR	rs465757-G		1E-6		0.084	[0.05-0.118] SD units decrease	NR [10700000] (imputed)	N
703	chr20	15590486	15590487	rs17694839	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	20p12.1	NR	rs17694839-?	NR	3E-6				Illumina [8270200] (imputed)	N
704	chr20	15599500	15599501	rs200751	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	20p12.1	NR	rs200751-G		4E-6		0.0986	[0.057-0.141] SD units increase	NR [10700000] (imputed)	N
704	chr20	15616246	15616247	rs12106130	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	20p12.1		rs12106130-?	NR	7E-6				Illumina [1365315]	N
704	chr20	15663770	15663771	rs6105452	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	20p12.1	MACROD2	rs6105452-?	NR	2E-8	(AA and Sub-Saharan African)			NR [at least 880000]	N
705	chr20	15739744	15739745	rs6043521	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	20p12.1	MACROD2	rs6043521-T	0.604	4E-8		0.0066	[0.0042-0.009] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
705	chr20	15739744	15739745	rs6043521	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p12.1		rs6043521-T	0.6035	1E-8		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
705	chr20	15750789	15750790	rs11699445	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	20p12.1	NR	rs11699445-G		3E-6		0.0746	[0.043-0.106] SD units decrease	NR [10700000] (imputed)	N
705	chr20	15754683	15754684	rs6131703	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	20p12.1	KIF16B	rs6131703-A	0.6048	4E-12		0.013756217	[0.0099-0.0176] unit increase	Illumina [9339358] (imputed)	N
705	chr20	15776240	15776241	rs6131710	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.1		rs6131710-T	0.38	1E-22		9.8	z score increase	Affymetrix [9061022] (imputed)	N
705	chr20	15776417	15776418	rs6131711	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20p12.1	FOXP2	rs6131711-?		1E-9				NR [7428630] (imputed)	N
705	chr20	15776526	15776527	rs6131712	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p12.1		rs6131712-A	0.38	2E-19		9.03	z score increase	Affymetrix [9061022] (imputed)	N
705	chr20	15776526	15776527	rs6131712	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p12.1	NR	rs6131712-A	0.3815	1E-17				NR [9056863] (imputed)	N
705	chr20	15783376	15783377	rs73246158	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Megamonas abundance in stool	5,959 Finnish ancestry individuals	NA	20p12.1		rs73246158-A	0.015444	4E-8		0.235834	[0.15-0.32] unit increase	Illumina [7980478] (imputed)	N
705	chr20	15795174	15795175	rs6135551	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p12.1		rs6135551-C	0.38	1E-11		6.78	z score increase	Affymetrix [9061022] (imputed)	N
705	chr20	15795174	15795175	rs6135551	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p12.1	NR	rs6135551-C	0.3857	2E-10				NR [9056863] (imputed)	N
705	chr20	15796236	15796237	rs6135555	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	20p12.1	MACROD2	rs6135555-A	0.39	7E-9				NR [9312144] (imputed)	N
705	chr20	15806209	15806210	rs73898513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p12.1		rs73898513-?	NR	2E-8				NR [~ 8900000] (imputed)	N
705	chr20	15813474	15813475	rs16996644	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20p12.1	MACROD2	rs16996644-C	0.873026	5E-20		0.0193482	[0.015-0.023] unit decrease	Affymetrix [12370749]	N
705	chr20	15813474	15813475	rs16996644	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p12.1	NA	rs16996644-C	0.8696	2E-12		0.0181	[0.013-0.023] unit decrease	NR [~ 27400000] (imputed)	N
705	chr20	15816235	15816236	rs16996657	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.1	NR	rs16996657-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
705	chr20	15816235	15816236	rs16996657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.1		rs16996657-?	NR	2E-10				NR [~ 8900000] (imputed)	N
705	chr20	15819494	15819495	rs8123881	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p12.1	MACROD2	rs8123881-G	0.163	4E-7		0.022	[0.013-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
705	chr20	15819494	15819495	rs8123881	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p12.1	MACROD2	rs8123881-G	0.149	4E-7	(EA)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
705	chr20	15819925	15819926	rs8118253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p12.1		rs8118253-A	NR	3E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
705	chr20	15832298	15832299	rs175804	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	20p12.1	KIF16B	rs175804-A	0.140060266616536	5E-8		0.024714464	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
705	chr20	15851076	15851077	rs6110809	27304844	Khong JJ	2016-06-01	Invest Ophthalmol Vis Sci	Association of Polymorphisms in MACRO Domain Containing 2 With Thyroid-Associated Orbitopathy.	Thyroid-associated orbitopathy in graves' disease	265 European ancestry cases with thyroid-associated orbitopathy, 147 European ancestry cases without thyroid-associated orbitopathy	319 European ancestry cases with thyroid-associated orbitopathy, 220 European ancestry cases without thyroid-associated orbitopathy	20p12.1	MACROD2	rs6110809-A	0.160	7E-6		1.81	[1.40-2.34]	Illumina [2200000]	N
706	chr20	15920297	15920298	rs6043629	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	20p12.1	MACROD2, LOC613266	rs6043629-?	NR	1E-8		0.0874	[0.057-0.118] unit increase	Affymetrix, Illumina [NR] (imputed)	N
706	chr20	15959942	15959943	rs6131755	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	20p12.1	Intergenic	rs6131755-?		7E-6		2.235921	[NR] unit decrease	Illumina [575353]	N
706	chr20	15973974	15973975	rs13044855	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20p12.1	NR	rs13044855-?	NR	9E-6				Illumina [NR] (imputed)	N
706	chr20	15975940	15975941	rs34718503	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20p12.1	NR	rs34718503-?	NR	8E-6				Illumina [NR] (imputed)	N
706	chr20	15982981	15982982	rs67890822	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20p12.1	NR	rs67890822-?	NR	2E-6				Illumina [NR] (imputed)	N
706	chr20	15983832	15983833	rs35209217	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20p12.1	NR	rs35209217-?	NR	2E-6				Illumina [NR] (imputed)	N
706	chr20	15987453	15987454	rs57792062	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	20p12.1	NA	rs57792062-G		2E-8		0.0155297	[0.01-0.021] unit decrease	Illumina [13288253] (imputed)	N
707	chr20	15993870	15993871	rs34589426	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	20p12.1	NR	rs34589426-?	NR	9E-6	(AA)	0.38556	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
707	chr20	16003405	16003406	rs6080100	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	20p12.1	MACROD2	rs6080100-?	0.2655	7E-6	(anti-B2 GPI)	2.086	[NR]	Affymetrix [906600]	N
707	chr20	16005679	16005680	rs744228	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute mucositis)	864 Dutch ancestry individuals	246 Dutch ancestry individuals	20p12.1		rs744228-C	NR	3E-6		0.14142686	[0.083-0.2] increase	Illumina [6334277] (imputed)	N
707	chr20	16054981	16054982	rs16997087	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		20p12.1	MACROD2	rs16997087-?	NR	2E-9	(Efficiency - R-paracentral)			Illumina [428287]	N
707	chr20	16054981	16054982	rs16997087	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		20p12.1	MACROD2	rs16997087-?	NR	1E-10	(Strength - R paracentral)			Illumina [428287]	N
707	chr20	16055271	16055272	rs775144	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p12.1	NR	rs775144-?	NR	3E-6		4.645	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
707	chr20	16066763	16066764	rs6075004	28881265	Sobalska-Kwapis M	2017-09-01	Eur J Obstet Gynecol Reprod Biol	New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.	Endometriosis	171 European ancestry cases, 2,934 European ancestry controls	NA	20p12.1	NR	rs6075004-A	0.309	9E-6		1.68	[1.333-2.119]	Illumina [274400]	N
707	chr20	16112674	16112675	rs2760545	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p12.1	MACROD2, KIF16B	rs2760545-T	0.5064	1E-10		0.0109403	[0.0076-0.0143] unit increase	Affymetrix [11880941] (imputed)	N
708	chr20	16144344	16144345	rs871913	26169365	Huang KC	2015-07-14	BMC Complement Altern Med	Susceptible gene of stasis-stagnation constitution from genome-wide association study related to cardiovascular disturbance and possible regulated traditional Chinese medicine.	Yu-Zhi constitution type in type 2 diabetes	539 non-aboriginal Taiwanese ancestry low Yu-Zhi score individuals, 408 non-aboriginal Taiwanese ancestry high Yu-Zhi score individuals	NA	20p12.1	Intergenic	rs871913-A	0.045	8E-6	(Trend model)	1.86	[0.78-4.44]	Illumina [508761]	N
708	chr20	16189262	16189263	rs2327990	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	20p12.1	NR	rs2327990-T	NR	3E-10	(Cox proportional hazards regression model)	21.97	[8.42-57.33]	Illumina [810622]	N
708	chr20	16197509	16197510	rs6110969	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	20p12.1	MACROD2, PPIAP17	rs6110969-T	0.08	3E-6		1.2	[1.11-1.29]	NR [NR]	N
708	chr20	16222092	16222093	rs6131805	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p12.1	MACROD2, KIF16B	rs6131805-T	0.4022	2E-11		1.026033		Affymetrix [11880941] (imputed)	N
708	chr20	16228307	16228308	rs2788913	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	20p12.1	NR	rs2788913-?	NR	4E-6		0.1138	[0.066-0.162] unit decrease	Illumina [at least 560000] (imputed)	N
708	chr20	16239682	16239683	rs78095690	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	20p12.1		rs78095690-T	0.5635	6E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
708	chr20	16239682	16239683	rs78095690	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	20p12.1		rs78095690-?	NR	6E-10				NR [~ 8900000] (imputed)	N
709	chr20	16264762	16264763	rs77829948	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	20p12.1	KIF16B	rs77829948-?		1E-6	(AA)	0.7651	[0.69-0.84] unit increase	Affymetrix, Illumina [NR] (imputed)	N
709	chr20	16277629	16277630	rs6080212	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	20p12.1	KIF16B	rs6080212-A	NR	1E-6	(Perc15, All)	2.2	[1.32-3.08] unit decrease	Illumina [7600000] (imputed)	N
709	chr20	16280309	16280310	rs190821608	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20p12.1	KIF16B	rs190821608-C	1.0	3E-6	(AA)	0.488	unit increase	Illumina [NR] (imputed)	N
709	chr20	16311309	16311310	rs2208059	21139019	Walsh KM	2010-12-07	Endocr Relat Cancer	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	20p12.1	KIF16B	rs2208059-?	NR	4E-7		2.42	[1.72-3.42]	Illumina [308330]	N
709	chr20	16360218	16360219	rs2236145	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	20p12.1	KIF16B	rs2236145-T	0.281	5E-11		0.0395		Illumina [243345]	N
709	chr20	16376017	16376018	rs56404116	32572145	Kawafune K	2020-06-22	J Hum Genet	Strong association between the 12q24 locus and sweet taste preference in the Japanese population revealed by genome-wide meta-analysis.	Sweet taste preference	12,312 Japanese ancestry individuals	NA	20p12.1	KIF16B	rs56404116-G	0.017	5E-6		0.203	[0.12-0.29] unit decrease	Illumina [5299861] (imputed)	N
710	chr20	16408271	16408272	rs12625552	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	20p12.1	KIF16B	rs12625552-G	0.06	2E-6	(female)	0.169	[0.1-0.24] unit decrease	Illumina [6380737] (imputed)	N
710	chr20	16408271	16408272	rs12625552	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Shannon index)	1,068 Japanese ancestry individuals	NA	20p12.1	KIF16B	rs12625552-G	0.06	2E-6		0.281	[0.17-0.39] unit decrease	Illumina [6380737] (imputed)	N
710	chr20	16408271	16408272	rs12625552	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	20p12.1	KIF16B	rs12625552-G	0.06	8E-6		1.65	[0.92-2.38] unit decrease	Illumina [6380737] (imputed)	N
710	chr20	16408271	16408272	rs12625552	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	20p12.1	KIF16B	rs12625552-G	0.06	3E-6		71.1	[41.7-100.5] unit decrease	Illumina [6380737] (imputed)	N
710	chr20	16478600	16478602	rs11468901	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.1	KIF16B	rs11468901-A	0.296042	5E-11		0.016168356	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
710	chr20	16508079	16508080	rs6650810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p12.1	KIF16B	rs6650810-T	0.274628	6E-13		0.01824205	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
710	chr20	16513112	16513113	rs117736555	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	20p12.1	NR	rs117736555-?	NR	3E-6		0.1121	[0.066-0.159] unit increase	Illumina [~ 7800000] (imputed)	N
711	chr20	16520358	16520359	rs12480324	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p12.1	NR	rs12480324-?	NR	4E-6		4.592	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
711	chr20	16524971	16524972	rs6044100	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.1	Intergenic	rs6044100-T	0.3453	2E-8	(MTAG)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
711	chr20	16532540	16532541	rs6111174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.1		rs6111174-?	NR	1E-9				NR [~ 8900000] (imputed)	N
711	chr20	16533161	16533162	rs16997877	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	20p12.1	KIF16B	rs16997877-C	0.247447	8E-6		0.188926	[0.11-0.27] unit increase	NR [7263501] (imputed)	N
711	chr20	16536413	16536414	rs6044112	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	20p12.1	C20orf23	rs6044112-?	NR	7E-7				Affymetrix, Illumina [~ 1300000]	N
711	chr20	16541088	16541089	rs6034530	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.1	NR	rs6034530-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
711	chr20	16541088	16541089	rs6034530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.1		rs6034530-?	NR	1E-8				NR [~ 8900000] (imputed)	N
711	chr20	16546845	16546846	rs4813224	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p12.1	KIF16B	rs4813224-T	0.262182	5E-9		0.00912165	[0.0061-0.0122] unit decrease	Affymetrix [12370749]	N
711	chr20	16554545	16554546	rs6080303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p12.1		rs6080303-A	NR	2E-11		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
711	chr20	16554545	16554546	rs6080303	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p12.1	NR	rs6080303-A	NR	5E-10		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
711	chr20	16558259	16558260	rs13044683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.1	NR	rs13044683-G	0.866359	4E-16				Affymetrix, Illumina [17210439] (imputed)	N
711	chr20	16560329	16560330	rs6034539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p12.1		rs6034539-A	0.128836	8E-12		0.02288602	[0.016-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr20	16560329	16560330	rs6034539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20p12.1	NR	rs6034539-G	0.870533	9E-16		0.022986	[0.017-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
711	chr20	16562105	16562106	rs112026770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs112026770-G	0.852164	4E-8		0.0296366	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
711	chr20	16562105	16562106	rs112026770	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs112026770-G	0.852164	4E-8		0.0294317	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
711	chr20	16564209	16564210	rs4814512	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p12.1	NA	rs4814512-A	0.8075	1E-9		0.0126	[0.0085-0.0167] unit increase	NR [~ 27400000] (imputed)	N
711	chr20	16621097	16621098	rs6034559	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	20p12.1	RPL7AL3, RPLP0P1	rs6034559-T	NR	8E-6		66.7955	[37.45-96.14] unit decrease	Illumina [6995140] (imputed)	N
712	chr20	16650694	16650695	rs6044208	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20p12.1	NR	rs6044208-?		4E-6				Illumina [4322238] (imputed)	N
712	chr20	16653075	16653076	rs2104198	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neurofibrillary tangles	909 European ancestry individuals	369 individuals	20p12.1	NR	rs2104198-C	0.5	5E-6	(EA)	0.08	[0.05-0.12] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
712	chr20	16660161	16660162	rs1885572	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to haloperidol in schizophrenia	192 Han Chinese ancestry cases	NA	20p12.1	SNRPB2	rs1885572-A	NR	9E-6		12.6252	[7.2-18.05] unit decrease	Illumina [6097251] (imputed)	N
712	chr20	16707397	16707398	rs2092470	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Food allergy (maternal genetic effects)	588 European ancestry complete and incomplete trios	NA	20p12.1	RPL7AP13, SNRPB2	rs2092470-?	NR	7E-6				Illumina [NR]	N
712	chr20	16736044	16736045	rs9917425	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Blood cell traits (multivariate analysis)	up to 6,407 Sub-Saharan African ancestry individuals	NA	20p12.1	OTOR	rs9917425-?	NR	7E-10				Illumina [20594536] (imputed)	N
712	chr20	16740824	16740825	rs4491792	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	20p12.1	OTOR	rs4491792-?	NR	4E-6	(Whole cohort; EA)			Illumina [up to 871502]	N
713	chr20	16792199	16792200	rs6135909	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p12.1	SNRPB2	rs6135909-?	NR	2E-6	(hippuric acid)	0.20206791	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
713	chr20	16850884	16850885	rs78649567	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	20p12.1	OTOR, PCSK2	rs78649567-?	NR	3E-6	(EA)	0.107	[0.062-0.152] unit decrease	Illumina [7176022] (imputed)	N
713	chr20	16860031	16860032	rs16998428	33992511	Chang X	2021-04-07	Nutr Metab Cardiovasc Dis	The association of genetically determined serum glycine with cardiovascular risk in East Asians.	Glycine levels	1,324 Chinese ancestry individuals	NA	20p12.1		rs16998428-T	0.917	5E-8		0.478	[0.31-0.65] unit increase	NR [NR] (imputed)	N
713	chr20	16881846	16881847	rs57677715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs57677715-A	0.0122	6E-9	(SERPINF1)	0.02282	NR unit increase	Illumina [1671387] (imputed)	N
713	chr20	16881846	16881847	rs57677715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs57677715-A	0.0122	2E-8	(SERPINA1)	2.601	NR unit increase	Illumina [1671387] (imputed)	N
714	chr20	16932591	16932592	rs6034694	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MLN	5,368 Icelandic ancestry individuals	NA	20p12.1		rs6034694-T	0.4606	8E-12		0.129817	[0.093-0.167] unit decrease	Illumina [7506463] (imputed)	N
714	chr20	16978092	16978093	rs58419810	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p12.1		rs58419810-G	0.28	4E-19		8.94	z score increase	Affymetrix [9061022] (imputed)	N
714	chr20	16978092	16978093	rs58419810	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p12.1	NR	rs58419810-G	0.2629	2E-17				NR [9056863] (imputed)	N
714	chr20	16978092	16978093	rs58419810	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	20p12.1		rs58419810-?	NR	9E-10				NR [9705931] (imputed)	N
714	chr20	16978092	16978093	rs58419810	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	20p12.1	SNX2, SNX24, PPIC	rs58419810-?		2E-9				NR [7428630] (imputed)	N
714	chr20	16978092	16978093	rs58419810	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20p12.1	NR	rs58419810-?		4E-13				NR [7428630] (imputed)	N
714	chr20	16980436	16980437	rs55769857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p12.1		rs55769857-T	0.27	1E-17		8.56	z score increase	Affymetrix [9061022] (imputed)	N
714	chr20	16980436	16980437	rs55769857	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p12.1		rs55769857-T	0.27	2E-13		7.37	z score increase	Affymetrix [9061022] (imputed)	N
714	chr20	16980436	16980437	rs55769857	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p12.1	NR	rs55769857-T	0.2628	6E-15				NR [9056863] (imputed)	N
715	chr20	17076803	17076804	rs117360869	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	20p12.1	NR	rs117360869-?	NR	5E-6		0.2274	[0.13-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
715	chr20	17085492	17085493	rs852033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p12.1		rs852033-?	NR	3E-16				NR [~ 8900000] (imputed)	N
715	chr20	17091232	17091233	rs852042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p12.1		rs852042-G	NR	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
715	chr20	17101341	17101342	rs852050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p12.1		rs852050-C	NR	6E-9		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
715	chr20	17122592	17122593	rs852069	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	20p12.1	PCSK2	rs852069-G	0.64	1E-13		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
715	chr20	17122592	17122593	rs852069	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	20p12.1	PCSK2	rs852069-A	0.37	3E-8		2.1	[1.32-2.88] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
716	chr20	17171372	17171373	rs947088	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20p12.1	PCSK2	rs947088-G	0.282112	1E-11		0.0106197	[0.0076-0.0137] unit decrease	Affymetrix [12370749]	N
716	chr20	17171372	17171373	rs947088	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p12.1	OTOR, PCSK2	rs947088-T	0.7185	2E-7		0.00973438	[0.006-0.0134] unit increase	Affymetrix [11880941] (imputed)	N
716	chr20	17171372	17171373	rs947088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p12.1		rs947088-?	NR	5E-9				NR [~ 8900000] (imputed)	N
716	chr20	17171372	17171373	rs947088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p12.1	NA	rs947088-T	0.7351	4E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
716	chr20	17171372	17171373	rs947088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	20p12.1	NA	rs947088-T	0.7351	4E-11		0.0126	[0.0089-0.0163] unit increase	NR [~ 27400000] (imputed)	N
716	chr20	17196607	17196608	rs1578407	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p12.1	NR	rs1578407-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
716	chr20	17208503	17208504	rs6136033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p12.1		rs6136033-?	NR	2E-8				NR [~ 8900000] (imputed)	N
716	chr20	17251369	17251370	rs6105735	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	20p12.1	NR	rs6105735-C	NR	7E-6		0.1097	[0.048-0.172] SD units decrease	NR [10700000] (imputed)	N
716	chr20	17262026	17262027	rs73088820	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p12.1	NR	rs73088820-C	0.02613	1E-9	(TAGLN2)	0.2695	NR unit increase	Illumina [1671387] (imputed)	N
716	chr20	17264603	17264604	rs11696277	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	20p12.1	NR	rs11696277-?	NR	1E-6	(genus_Anaerotruncus)	0.792154	[0.49-1.1] unit increase	Affymetrix [210924]	N
716	chr20	17277279	17277280	rs6111491	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	20p12.1		rs6111491-C	NR	7E-7		2.9146	[1.79-4.04] unit increase	Illumina [NR] (imputed)	N
717	chr20	17345770	17345771	rs13045827	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p12.1	Intergenic	rs13045827-T	0.1739	1E-8	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
717	chr20	17348607	17348608	rs6131942	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	20p12.1		rs6131942-A	0.4196	8E-12		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
717	chr20	17348607	17348608	rs6131942	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	20p12.1	PCSK2	rs6131942-G	0.5820000000000001	7E-16		1.0274324		Affymetrix [11880941] (imputed)	N
717	chr20	17348607	17348608	rs6131942	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p12.1	PCSK2	rs6131942-G	0.5820000000000001	7E-16		1.0266489		Affymetrix [11880941] (imputed)	N
717	chr20	17357572	17357573	rs4814615	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA		PCSK2	rs4814615-?	0.19	5E-6		1.59	[1.30-1.95]	Affymetrix [832357]	N
717	chr20	17368541	17368542	rs6044777	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	20p12.1	PCSK2	rs6044777-A	0.17	8E-6	(fibrinogen)	0.23	[0.13-0.33] g/L increase	Illumina [316730]	N
717	chr20	17379155	17379156	rs181968893	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	20p12.1	PCSK2	rs181968893-A	0.006	4E-6		3.69	[2.12-6.44]	Illumina [9327222] (imputed)	N
717	chr20	17405201	17405202	rs564680092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unruptured cerebral aneurysm	945 European ancestry cases, 472,738 European ancestry controls, 91 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	20p12.1		rs564680092-A	NR	1E-8		7.3596	[4.82-9.9] unit increase	Affymetrix, Illumina [25841390] (imputed)	N
717	chr20	17405201	17405202	rs564680092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Unruptured cerebral aneurysm	91 East Asian ancestry cases, 152,022 East Asian ancestry controls	NA	20p12.1		rs564680092-A	0.009460047	1E-8		7.359629	[4.82-9.9] unit increase	Illumina [13425573] (imputed)	N
717	chr20	17421977	17421978	rs2021786	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	20p12.1	PCSK2	rs2021786-T	0.3356	7E-6		0.1	[0.058-0.15] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
718	chr20	17436472	17436473	rs6044834	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p12.1	PCSK2	rs6044834-C	0.069	8E-8	(Total antioxidants )	0.04	[NR] mM increase	Illumina [899892]	N
718	chr20	17438120	17438121	rs36120534	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p12.1		rs36120534-T	0.1811	4E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
718	chr20	17445077	17445078	rs4239724	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	20p12.1	NR	rs4239724-G	0.214746297089147	2E-8		0.015127183	[0.0098-0.0204] unit decrease	NR [NR]	N
718	chr20	17445077	17445078	rs4239724	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	20p12.1	NR	rs4239724-G	0.22	1E-8		0.021	[0.013-0.029] unit decrease	Affymetrix [~ 8600000] (imputed)	N
718	chr20	17478048	17478049	rs6044852	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (donor effect)	Up to 4,475 European ancestry individuals	NA	20p12.1	BFSP1	rs6044852-A	NR	2E-6	(adjusted for clinical variables)			Illumina [up to 3791089] (imputed)	N
718	chr20	17486784	17486785	rs7268734	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	20p12.1	BFSP1	rs7268734-G	0.037	6E-6		1.53	[1.27-1.84]	Affymetrix [7435577] (imputed)	N
718	chr20	17509783	17509784	rs148424931	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	20p12.1	BFSP1	rs148424931-T	0.033	8E-6		0.0886	[0.05-0.127] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
719	chr20	17566068	17566069	rs17791782	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	20p12.1	DSTN	rs17791782-?	0.07867	6E-6	(LAC)	2.628	[NR]	Affymetrix [906600]	N
719	chr20	17592299	17592300	rs12480819	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	20p12.1	intergenic	rs12480819-G	0.24	3E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
719	chr20	17594728	17594729	rs13734	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p12.1		rs13734-A	0.512538	2E-8		0.0113441	[0.0074-0.0153] unit decrease	Illumina [13479295] (imputed)	N
719	chr20	17594728	17594729	rs13734	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p12.1	RRBP1	rs13734-?	NR	2E-9		0.01707033	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
719	chr20	17594728	17594729	rs13734	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	20p12.1	DSTN, RRBP1	rs13734-A	0.2009	1E-6		0.0384	[0.023-0.054] unit increase	NR [8041861] (imputed)	N
719	chr20	17596154	17596155	rs1132274	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20p12.1		rs1132274-A	NR	2E-13		0.0192	[0.014-0.024] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
719	chr20	17596154	17596155	rs1132274	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	20p12.1	RRBP1	rs1132274-A	0.168	2E-8		0.036	[0.023-0.048] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
719	chr20	17596154	17596155	rs1132274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20p12.1	NR	rs1132274-A	NR	3E-10		0.0215	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr20	17596154	17596155	rs1132274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20p12.1	NR	rs1132274-A	NR	3E-17		0.0289	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr20	17596154	17596155	rs1132274	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20p12.1	RRBP1	rs1132274-C	0.845971	1E-16		0.0218615	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
719	chr20	17596154	17596155	rs1132274	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20p12.1	RRBP1	rs1132274-C	0.845914	2E-26		0.0288548	[0.024-0.034] unit increase	Affymetrix [NR] (imputed)	N
719	chr20	17596154	17596155	rs1132274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.1		rs1132274-?	NR	1E-11				NR [~ 8900000] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	8E-9		0.0302903	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	2E-10		0.0326692	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	9E-9		0.0285427	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	1E-8		0.0311007	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	1E-10		0.0332805	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	2E-9		0.0301065	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	5E-9		0.0293294	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	3E-10		0.0320709	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	2E-8		0.029383	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	2E-8		0.0287284	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	1E-8		0.0290083	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
719	chr20	17597530	17597531	rs2236252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20p12.1		rs2236252-C	0.832967	5E-10		0.0313898	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
719	chr20	17598701	17598704	rs57326119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20p12.1	NR	rs57326119-G	NR	3E-10		0.0206	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr20	17598704	17598707	rs398101356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20p12.1		rs398101356-G	NR	5E-9		0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
719	chr20	17599650	17599651	rs12479750	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20p12.1	RRBP1	rs12479750-C	0.16	5E-9		5.84	z-score increase	Affymetrix [4311822] (imputed)	N
719	chr20	17617259	17617260	rs137981542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20p12.1	NR	rs137981542-A	NR	7E-10		0.2746	[0.19-0.36] unit decrease	Affymetrix [9000000] (imputed)	N
719	chr20	17627726	17627727	rs6034875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20p12.1		rs6034875-A	NR	4E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
719	chr20	17627726	17627727	rs6034875	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20p12.1		rs6034875-A	NR	7E-16		0.0135	[0.01-0.017] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
719	chr20	17627726	17627727	rs6034875	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	20p12.1		rs6034875-A	0.58	1E-15		0.0653	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
719	chr20	17629161	17629162	rs6080761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20p12.1	RRBP1	rs6080761-A	0.419041	1E-10		0.014408213	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
719	chr20	17629161	17629162	rs6080761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.1	NR	rs6080761-A	0.397944	8E-21				Affymetrix, Illumina [19872809] (imputed)	N
719	chr20	17629161	17629162	rs6080761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20p12.1	NR	rs6080761-A	0.419413	5E-20		0.01848	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
719	chr20	17629161	17629162	rs6080761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20p12.1		rs6080761-?	NR	7E-17				NR [~ 8900000] (imputed)	N
719	chr20	17630044	17630045	rs3790315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20p12.1		rs3790315-T	NR	5E-11		0.0141	[0.0098-0.0184] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
719	chr20	17630044	17630045	rs3790315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20p12.1	RRBP1	rs3790315-T	0.580112	1E-9		0.013884057	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr20	17630044	17630045	rs3790315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p12.1	RRBP1	rs3790315-T	0.580099	5E-9		0.013349571	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr20	17630044	17630045	rs3790315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20p12.1	RRBP1	rs3790315-T	0.580109	2E-14		0.017195335	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr20	17630044	17630045	rs3790315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p12.1	NR	rs3790315-T	0.60598	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
719	chr20	17630044	17630045	rs3790315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p12.1	NR	rs3790315-T	0.579423	2E-12		0.013222	[0.0096-0.0169] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
719	chr20	17664545	17664546	rs6111609	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation (age at onset)	382 European ancestry individuals	67 European ancestry individuals	20p12.1	RRBP1	rs6111609-A	0.28	5E-6		2.78	[1.59-3.97] unit increase	Illumina [7033776] (imputed)	N
719	chr20	17664545	17664546	rs6111609	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia (age at onset)	382 European ancestry GRN mutation carrier individuals	67 European ancestry GRN mutation carrier individuals, 143 European ancestry GRN negative individuals	20p12.1	RRBP1	rs6111609-A	0.22	1E-6		2.86	unit increase	Illumina [7033776] (imputed)	N
719	chr20	17665661	17665662	rs12626147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p12.1		rs12626147-?	NR	4E-8				NR [~ 8900000] (imputed)	N
719	chr20	17668732	17668733	rs56331184	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20p12.1	BANF2	rs56331184-T	0.0240310691137941	2E-6	(F_Sutterellaceae_HB)	1.26885	[0.74-1.8] unit decrease	Illumina [7711310] (imputed)	N
719	chr20	17685011	17685012	rs117497022	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		BANF2	rs117497022-?	NR	1E-13		1.54195	[NR] unit decrease	Affymetrix [NR] (imputed)	N
719	chr20	17685348	17685349	rs733626	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	20p12.1		rs733626-T	0.14	4E-9		0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
720	chr20	17702707	17702708	rs78719261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20p12.1		rs78719261-G	NR	5E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
720	chr20	17755160	17755161	rs7274697	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20p12.1	BANF2	rs7274697-G	0.916878	2E-10		0.0211998	[0.015-0.028] unit decrease	NR [13737936] (imputed)	N
720	chr20	17755244	17755245	rs7267752	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20p12.1		rs7267752-?	NR	2E-11		0.0251917	[0.018-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
720	chr20	17755355	17755356	rs7274668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20p12.1		rs7274668-?	NR	3E-11				NR [~ 8900000] (imputed)	N
720	chr20	17769539	17769540	rs4814656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p12.1		rs4814656-?	NR	1E-21				NR [~ 8900000] (imputed)	N
720	chr20	17769893	17769894	rs59434655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p12.1		rs59434655-G	NR	2E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
720	chr20	17785929	17785930	rs2745826	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	20p12.1	BANF2	rs2745826-?	NR	4E-8		0.7455	[0.42-1.07] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
720	chr20	17792322	17792323	rs969075	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20p12.1	BANF2	rs969075-T	0.335073	3E-10		0.0140201	[0.0097-0.0184] unit decrease	Affymetrix [NR] (imputed)	N
720	chr20	17801812	17801813	rs2618601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20p12.1		rs2618601-?	NR	1E-9				NR [~ 8900000] (imputed)	N
720	chr20	17804067	17804068	rs61433703	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20p12.1	BANF2	rs61433703-G	0.836331	3E-8		0.0158353	[0.01-0.021] unit decrease	Affymetrix [NR] (imputed)	N
720	chr20	17818140	17818141	rs6080859	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	20p12.1	NR	rs6080859-G	NR	2E-9	(EA)	0.05	NR unit decrease	Affymetrix [723305]	N
720	chr20	17818140	17818141	rs6080859	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	20p12.1	NR	rs6080859-G	NR	2E-7				Affymetrix [723305]	N
720	chr20	17825142	17825143	rs2077147	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2077147-C	0.336549315178571	3E-6	(IGP10)	0.1568	[0.091-0.223] unit decrease	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.63954583935743	1E-6	(IGP39)	0.1562	[0.093-0.22] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639296878396437	9E-7	(IGP9)	0.1593	[0.096-0.223] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639234834372217	6E-7	(IGP68)	0.1618	[0.098-0.225] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639172889630619	9E-6	(IGP71)	0.1435	[0.08-0.207] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639172889630619	9E-6	(IGP70)	0.1435	[0.08-0.207] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639172889630619	4E-6	(IGP40)	0.1483	[0.085-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17829279	17829280	rs2745851	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p12.1	NR	rs2745851-G	0.639172889630619	2E-6	(IGP66)	0.1529	[0.089-0.216] unit increase	Illumina [~ 2500000] (imputed)	N
721	chr20	17831205	17831206	rs76673357	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	20p12.1	NR	rs76673357-G	0.056	5E-7		0.22	[0.14-0.3] unit increase	Illumina [~ 8400000] (imputed)	N
721	chr20	17843967	17843968	rs2618568	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20p12.1	intergenic	rs2618568-A	0.6004	1E-9		0.0186	[0.013-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
721	chr20	17843967	17843968	rs2618568	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618568-C	NR	5E-9		0.026	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17843967	17843968	rs2618568	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618568-C	0.396	1E-8	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17843967	17843968	rs2618568	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618568-C	NR	8E-15		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17843967	17843968	rs2618568	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618568-C	0.396	6E-14	(EA)	0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17843967	17843968	rs2618568	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	20p12.1	SNX5	rs2618568-C	0.37	7E-15		0.049	[0.037-0.061] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
721	chr20	17843967	17843968	rs2618568	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	20p12.1	SNX5	rs2618568-C	0.37	2E-12		0.044	[0.032-0.056] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
721	chr20	17844491	17844492	rs2618567	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618567-G	0.341118	3E-8		0.0233159	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844491	17844492	rs2618567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20p12.1		rs2618567-T	NR	2E-16		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
721	chr20	17844491	17844492	rs2618567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20p12.1		rs2618567-T	NR	4E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
721	chr20	17844491	17844492	rs2618567	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20p12.1	SNX5	rs2618567-G	0.341121	3E-11		0.00278109	[0.002-0.0036] unit decrease	Affymetrix [13995440] (imputed)	N
721	chr20	17844491	17844492	rs2618567	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20p12.1	NR	rs2618567-G	0.34124	3E-73		0.036634	[0.033-0.041] unit increase	Affymetrix [15000001]	N
721	chr20	17844491	17844492	rs2618567	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20p12.1	OVOL2	rs2618567-?	NR	8E-41		0.0362	[0.031-0.041] unit increase	Affymetrix [5701386] (imputed)	N
721	chr20	17844491	17844492	rs2618567	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	20p12.1	AL035045.1	rs2618567-G	0.340873	1E-11		0.040058836	[0.028-0.052] unit increase	Affymetrix [7288503] (imputed)	N
721	chr20	17844518	17844535	rs11268007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20p12.1		rs11268007-A	NR	5E-9		0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
721	chr20	17844518	17844535	rs11268007	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p12.1		rs11268007-A	NR	4E-14		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	3E-8		0.0217759	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	7E-14		0.0315615	[0.023-0.04] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	3E-17		0.034932	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	5E-16		0.0329466	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	7E-10		0.0250958	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	6E-9		0.0229142	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.343318	1E-10		0.026885	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	2E-9		0.0234361	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.343318	1E-10		0.0270031	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	3E-9		0.0244077	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20p12.1		rs771193934-AGGCATGCTGCCAAGAAT	0.34331	9E-10		0.0241343	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.342205	7E-20		0.00763168	[0.0059-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.342841	4E-14		0.00957694	[0.007-0.0121] unit increase	Affymetrix [16585854] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.341545	2E-9		0.00653936	[0.0041-0.0089] unit increase	Affymetrix [16582621] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.342205	2E-14		0.00748178	[0.0055-0.0094] unit increase	Affymetrix [16582965] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.342841	1E-10		0.00965753	[0.0067-0.0126] unit increase	Affymetrix [16585866] (imputed)	N
721	chr20	17844518	17844518	rs771193934	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20p12.1	NR	rs771193934-AGGCATGCTGCCAAGAAT	0.341545	7E-7		0.00597457	[0.0034-0.0085] unit increase	Affymetrix [16582614] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	3E-9		0.024514	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339725	2E-10		0.0269519	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-12		0.0297089	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-13		0.0303145	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	1E-8		0.0244783	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	5E-10		0.0261761	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-12		0.0291331	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	1E-13		0.0309484	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	1E-11		0.0294292	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-8		0.0237902	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-8		0.0238711	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	3E-11		0.0280546	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	5E-9		0.0253474	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339725	1E-8		0.024008	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	8E-12		0.0283391	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	5E-14		0.0312681	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-11		0.0293445	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-8		0.0243187	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-10		0.0268914	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	6E-10		0.0267168	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	8E-11		0.0274304	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-10		0.0277973	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-8		0.0246343	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	9E-9		0.0248274	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	9E-9		0.0249446	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	7E-10		0.0264865	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	3E-12		0.0284981	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339695	1E-10		0.0268947	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	2E-9		0.0253372	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	9E-11		0.0279896	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	3E-8		0.0239912	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	3E-9		0.0250956	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-12		0.0293186	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	6E-13		0.0295119	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339695	2E-9		0.0254803	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-9		0.0249384	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	1E-8		0.0246515	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	7E-9		0.0249497	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	8E-10		0.0258585	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-9		0.0250359	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	20p12.1		rs2618566-G	0.339706	4E-8		0.0240134	[0.015-0.033] unit increase	NR [11722792] (imputed)	N
721	chr20	17844683	17844684	rs2618566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	20p12.1		rs2618566-T	NR	2E-13		0.0377	[0.028-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
721	chr20	17844683	17844684	rs2618566	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20p12.1		rs2618566-T	NR	2E-22		0.0219	[0.017-0.026] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
721	chr20	17844683	17844684	rs2618566	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20p12.1	BANF2, SNX5	rs2618566-?		9E-11		0.0308	[0.022-0.04] unit increase	Illumina [31500000] (imputed)	N
721	chr20	17844683	17844684	rs2618566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20p12.1	SNX5	rs2618566-G	0.340138	1E-29		0.0248873	[0.021-0.029] unit increase	Affymetrix [NR] (imputed)	N
721	chr20	17844683	17844684	rs2618566	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20p12.1	SNX5	rs2618566-G	0.340098	3E-43		0.0302601	[0.026-0.035] unit increase	Affymetrix [NR] (imputed)	N
721	chr20	17844683	17844684	rs2618566	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	20p12.1	NR	rs2618566-T	0.6441	1E-22				Affymetrix, Illumina [at least 2500000] (imputed)	N
721	chr20	17844683	17844684	rs2618566	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20p12.1	intergenic	rs2618566-T	0.6491	9E-22		0.03	[0.024-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
721	chr20	17844683	17844684	rs2618566	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618566-G	NR	5E-11		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17844683	17844684	rs2618566	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618566-G	0.35	2E-10	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17844683	17844684	rs2618566	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618566-G	NR	1E-16		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17844683	17844684	rs2618566	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20p12.1	NR	rs2618566-G	0.35	1E-15	(EA)	0.04	unit increase	Affymetrix [at least 7091467] (imputed)	N
721	chr20	17845071	17845072	rs1810504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	20p12.1		rs1810504-C	NR	1E-8		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	20p12.1		rs2328223-A	0.8031	5E-8		1.148	[0.73-1.56] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20p12.1	BANF2, SNX5	rs2328223-C	NR	9E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20p12.1	BANF2, SNX5	rs2328223-C	NR	8E-11				Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20p12.1	BANF2, SNX5	rs2328223-C	NR	7E-77				Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20p12.1	BANF2, SNX5	rs2328223-C	NR	3E-85	(EA)			Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20p12.1	BANF2, SNX5	rs2328223-C	NR	2E-10		1.077	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20p12.1	BANF2, SNX5	rs2328223-C	NR	1E-9	(EA)	1.445	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20p12.1	BANF2, SNX5	rs2328223-C	NR	1E-6		1.253	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
721	chr20	17845920	17845921	rs2328223	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20p12.1	SNX5	rs2328223-A	0.751	2E-10	(Trans-ethnic initial)	0.0299	[0.02-0.04] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
721	chr20	17845920	17845921	rs2328223	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20p12.1	SNX5	rs2328223-C	0.21	6E-9		0.03	[NR] unit increase	NR [NR] (imputed)	N
721	chr20	17847734	17847735	rs2745865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20p12.1	NR	rs2745865-C	NR	2E-18		0.0289	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr20	17847734	17847735	rs2745865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20p12.1	NR	rs2745865-C	NR	9E-24		0.0333	[0.027-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr20	17847734	17847735	rs2745865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20p12.1	NR	rs2745865-C	NR	4E-30		0.0379	[0.031-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
721	chr20	17859705	17859706	rs2745803	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	20p12.1	NR	rs2745803-A	0.789	2E-12		1.0869565	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
721	chr20	17860021	17860022	rs6111715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	20p12.1		rs6111715-C	NR	8E-12		0.0786	[0.056-0.101] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
721	chr20	17860021	17860022	rs6111715	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	20p12.1	RP5-905G11.3	rs6111715-C	0.179159	5E-12		0.08200866	[0.059-0.105] unit decrease	Affymetrix [7288503] (imputed)	N
721	chr20	17860021	17860022	rs6111715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	20p12.1		rs6111715-?	NR	1E-10				NR [~ 8900000] (imputed)	N
721	chr20	17861813	17861814	rs240753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	20p12.1		rs240753-?	NR	5E-8				NR [~ 8900000] (imputed)	N
721	chr20	17882451	17882452	rs2618647	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	20p11.23	RNU6-192P	rs2618647-A	0.5068	3E-12		0.1216	[0.087-0.156] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
721	chr20	17909722	17909723	rs62208127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p11.23		rs62208127-T	0.123553	6E-10		0.021018196	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
721	chr20	17927209	17927210	rs62208130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20p11.23		rs62208130-G	NR	3E-9		0.0202	[0.014-0.027] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
721	chr20	17930305	17930306	rs11697739	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	20p11.23	NR	rs11697739-T	0.4821	5E-23		0.0254133	[0.02-0.03] unit decrease	Affymetrix [3505788] (imputed)	N
721	chr20	17938882	17938883	rs17802375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20p11.23		rs17802375-?	NR	2E-9				NR [~ 8900000] (imputed)	N
721	chr20	17954705	17954706	rs7264688	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	20p11.23	NR	rs7264688-T	0.67	5E-6		1.47	[1.31-1.63]	NR [up to 6398204] (imputed)	N
721	chr20	17955152	17955153	rs6105852	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	20p11.23	NR	rs6105852-A	0.608027	1E-25		0.0221	[0.018-0.026] unit increase	Affymetrix [23037915] (imputed)	N
722	chr20	17963859	17963860	rs55776024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p11.23		rs55776024-?	NR	9E-14				NR [~ 8900000] (imputed)	N
722	chr20	18008842	18008843	rs113677319	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p11.23	NR	rs113677319-?	NR	1E-8				Illumina [7760689] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20p11.23	OVOL2	rs45473509-G	0.006189	7E-11		0.10498972	[0.073-0.137] unit increase	Affymetrix [93095623] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p11.23	OVOL2	rs45473509-G	0.00619599999999998	5E-13		0.113237	[0.084-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p11.23	OVOL2	rs45473509-G	0.00619700000000001	4E-13		0.11657216	[0.085-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.00620454	4E-10				Affymetrix, Illumina [24332387] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.006292	5E-12		0.094876	[0.068-0.122] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.00620945	2E-13				Affymetrix, Illumina [24246363] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.006297	1E-15		0.107869	[0.081-0.134] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.00627976	1E-11				Affymetrix, Illumina [20825802] (imputed)	N
722	chr20	18031282	18031283	rs45473509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20p11.23	NR	rs45473509-G	0.006359	1E-13		0.104182	[0.077-0.132] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
722	chr20	18032630	18032631	rs113805511	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	20p11.23	OVOL2	rs113805511-A	NR	2E-7	(EA)			Illumina [up to 11995908] (imputed)	N
722	chr20	18032630	18032631	rs113805511	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	20p11.23	OVOL2	rs113805511-A	NR	2E-7				Illumina [up to 11995908] (imputed)	N
722	chr20	18043926	18043927	rs6045173	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	20p11.23	NR	rs6045173-?	0.54	8E-6	(EA)	2.564103	[2.15-2.98]	Illumina [905956]	N
722	chr20	18078551	18078552	rs1124933	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	20p11.23	PET117	rs1124933-A	NR	8E-6		0.16	[0.082-0.238] unit decrease	Illumina [5918868] (imputed)	N
722	chr20	18079130	18079131	rs17725255	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	20p11.23	CSRP2BP	rs17725255-?	0.11	2E-6				Illumina [~ 598000]	N
723	chr20	18100806	18100807	rs73105560	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting docosahexaenoic acid (22:6)	4,734 individuals	NA	20p11.23		rs73105560-A	0.063933588	2E-8		0.238756	[0.16-0.32] mmol/l decrease	Illumina [7701709] (imputed)	N
723	chr20	18177699	18177700	rs34017077	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	20p11.23	KAT14	rs34017077-G	0.76	3E-6		0.3	[0.18-0.42] unit increase	Illumina [7597379] (imputed)	N
724	chr20	18219684	18219685	rs59008350	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuropathologic traits (pleiotropy)	909 European ancestry individuals	369 individuals	20p11.23	NR	rs59008350-C	0.96	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
724	chr20	18277831	18277832	rs73601808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p11.23		rs73601808-G	NR	1E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
724	chr20	18288164	18288165	rs16978956	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20p11.23	ZNF133	rs16978956-G	0.188	3E-9	(Japanese)	0.026	[0.018-0.034] unit increase	Illumina [6108953] (imputed)	N
724	chr20	18290978	18290979	rs7274963	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20p11.23	ZNF133	rs7274963-G	0.18	2E-9		0.02	[0.014-0.026] unit increase	Illumina [6108953] (imputed)	N
724	chr20	18295860	18295861	rs2228274	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ZNF133	rs2228274-?	NR	5E-13	(male)	2.07995	[NR] unit decrease	Affymetrix [NR] (imputed)	N
724	chr20	18296075	18296076	rs2228273	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	20p11.23	ZNF133	rs2228273-A	0.0819	6E-14		0.0238	[0.018-0.03] unit increase	Illumina [246328]	N
724	chr20	18312233	18312233	rs758596295	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL049646.1	rs758596295-?	NR	1E-14	(male)	2.37253	[NR] unit decrease	Affymetrix [NR] (imputed)	N
725	chr20	18352385	18352385	rs148431542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p11.23		rs148431542-TAAAGTAA	NR	2E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
725	chr20	18352385	18352385	rs148431542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	20p11.23		rs148431542-TAAAGTAA	0.697584	2E-8		0.0169095	[0.011-0.023] unit decrease	Illumina [13479924] (imputed)	N
725	chr20	18379994	18379995	rs6132053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20p11.23	DZANK1	rs6132053-G	0.892391	3E-10		0.022488419	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr20	18390979	18390980	rs6132057	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	20p11.23	NR	rs6132057-A	0.847	3E-6	(Latino)	1.4492754	[1.23-1.69]	Affymetrix [9737707] (imputed)	N
725	chr20	18391261	18391262	rs6045385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	20p11.23		rs6045385-A	0.386919	2E-8		0.0182568	[0.012-0.025] unit increase	Illumina [13479178] (imputed)	N
725	chr20	18407009	18407010	rs79932869	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p11.23	NR	rs79932869-T	0.01045	2E-8	(SEPT11)	0.04081	NR unit decrease	Illumina [1671387] (imputed)	N
725	chr20	18421987	18421988	rs6045400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p11.23		rs6045400-?	NR	5E-11				NR [~ 8900000] (imputed)	N
725	chr20	18463919	18463920	rs3790148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20p11.23	NR	rs3790148-C	0.10163	2E-11		0.020659	[0.015-0.027] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
726	chr20	18491699	18491700	rs200152499	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	20p11.23		rs200152499-?	NR	1E-14		0.679564	[0.5-0.86] unit increase	NR [9800000] (imputed)	N
726	chr20	18507014	18507015	rs371646735	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	20p11.23		rs371646735-?	NR	1E-8		0.578876	[0.38-0.78] unit increase	NR [9800000] (imputed)	N
726	chr20	18529232	18529233	rs3736775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	20p11.23		rs3736775-?	NR	8E-8				NR [~ 8900000] (imputed)	N
726	chr20	18529854	18529855	rs6136407	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p11.23	DZANK1, POLR3F, SEC23B	rs6136407-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
726	chr20	18596423	18596424	rs6136437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20p11.23	NR	rs6136437-C	0.111507	1E-10		0.018859	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
727	chr20	18640527	18640528	rs148286224	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p11.23	NR	rs148286224-?	NR	5E-8				Illumina [7760689] (imputed)	N
727	chr20	18645637	18645638	rs6136459	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	20p11.23	DTD1	rs6136459-T	0.5997	5E-7		0.0052	[0.0032-0.0072] unit increase	Affymetrix [~ 7740000] (imputed)	N
727	chr20	18656529	18656530	rs28429420	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	20p11.23	NR	rs28429420-A	0.395	4E-9		0.010665695	[0.0071-0.0142] unit decrease	Affymetrix [NR] (imputed)	N
727	chr20	18658074	18658075	rs4814773	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	20p11.23	DTD1, RP11, 379J5.5	rs4814773-T	0.3529	1E-6		0.011435612	[0.0062-0.0167] unit increase	NR [9417325] (imputed)	N
727	chr20	18659393	18659394	rs6136465	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	20p11.23	NR	rs6136465-A	0.3967	1E-8		0.012194927	[0.008-0.0164] unit decrease	Affymetrix [10613246] (imputed)	N
727	chr20	18660666	18660667	rs150097070	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20p11.23	DTD1, RP11-379J5.5, DUXAP7, EEF1A1P34	rs150097070-G	NR	5E-6	(sleep onset irregularity)	0.1333	[0.076-0.19] unit increase	Affymetrix [7141204] (imputed)	N
727	chr20	18693079	18693080	rs62217022	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	20p11.23	DTD1	rs62217022-G	0.396	1E-8		0.0148	[0.0097-0.0199] unit decrease	Illumina [~ 250000] (imputed)	N
727	chr20	18708538	18708539	rs1998122	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	20p11.23	NR	rs1998122-A	NR	1E-8		0.01403	[0.0092-0.0188] unit decrease	Affymetrix [10847151] (imputed)	N
728	chr20	18777979	18777980	rs3762220	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	C-reactive protein (red blood cell fatty acid level interaction)	2,703 individuals	NA	20p11.23	LINC00652, LOC107985399, LOC100270804, EEF1A1P34, DTD1, C20orf78	rs3762220-?	0.048384603	3E-8	(OA)	5.2152896	[3.37-7.06] unit increase	Affymetrix [2500000] (imputed)	N
728	chr20	18779266	18779267	rs3762222	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.23	DTD1	rs3762222-?	NR	2E-6	(asymmetric dimethylarginine)	0.78228337	[0.46-1.1] unit decrease	Affymetrix [at least 2500000] (imputed)	N
728	chr20	18850459	18850460	rs149624949	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	20p11.23	C20orf78	rs149624949-G	NR	3E-9		0.372	[0.25-0.5] unit increase	NR [11024754] (imputed)	N
729	chr20	18878963	18878964	rs117183447	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p11.23	NR	rs117183447-?	NR	4E-8				Illumina [7760689] (imputed)	N
729	chr20	18885737	18885738	rs742731	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	20p11.23	C20orf79, LOC100130062	rs742731-A	0.407	5E-6	(Carbohydrate)			Affymetrix [590000]	N
729	chr20	18885737	18885738	rs742731	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	20p11.23	C20orf79, LOC100130062	rs742731-A	0.407	2E-6	(Carbohydrate)			Affymetrix [590000]	N
729	chr20	18889052	18889053	rs6045682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.23	DTD1	rs6045682-?	NR	1E-7	(asymmetric dimethylarginine)	0.88601893	[0.56-1.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
729	chr20	18945579	18945580	rs6112176	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	20p11.23	C20orf78, SCP2D1, LINC00652, EEF1A1P34	rs6112176-?		2E-6		1.2961	[1.17-1.43]	Illumina [9389922] (imputed)	N
729	chr20	18982220	18982221	rs1475125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.23		rs1475125-?	NR	8E-11				NR [~ 8900000] (imputed)	N
730	chr20	19059818	19059819	rs76310829	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	20p11.23	SLC24A3	rs76310829-T	0.09	9E-6	(African American)	0.3	0.17-0.43 unit decrease	Illumina [NR] (imputed)	N
730	chr20	19066781	19066782	rs181810557	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	AL136090.1	rs181810557-A	NR	6E-9		0.0501439	[0.033-0.067] unit decrease	Affymetrix [321016] (imputed)	N
730	chr20	19111255	19111256	rs6075475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	AL136090.1	rs6075475-G	NR	4E-8		0.01576	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
730	chr20	19132513	19132513	rs375702194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	AL136090.1	rs375702194-C	NR	1E-10		0.0190971	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
730	chr20	19132513	19132513	rs375702194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	AL136090.1	rs375702194-C	NR	6E-11		0.0186457	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
731	chr20	19146449	19146450	rs143934587	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram and depression	2,963 European ancestry responder cases, 191,936 European ancestry healthy controls	NA	20p11.23	C20orf78, SLC24A3	rs143934587-?		7E-7		6.711409	[3.61-12.5]	Illumina [~ 12000000] (imputed)	N
731	chr20	19157445	19157446	rs2876517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs2876517-G	NR	2E-10		0.0322503	[0.022-0.042] unit decrease	Affymetrix [321788] (imputed)	N
731	chr20	19157445	19157446	rs2876517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs2876517-G	NR	7E-13		0.0351967	[0.026-0.045] unit decrease	Affymetrix [321016] (imputed)	N
731	chr20	19166670	19166671	rs146801533	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Rectal cancer	2,091 European ancestry cases, 410,350 European ancestry controls	NA	20p11.23		rs146801533-G	0.01007	4E-7		1.8221574	NR	Affymetrix [7846216] (imputed)	N
731	chr20	19186714	19186715	rs988069	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs988069-A	NR	6E-10		0.0184014	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
731	chr20	19188225	19188226	rs6075485	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs6075485-A	NR	6E-12		0.0194564	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
731	chr20	19191403	19191404	rs6045908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs6045908-G	NR	2E-8		0.0165472	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
731	chr20	19191403	19191404	rs6045908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs6045908-G	NR	1E-10		0.0184031	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
731	chr20	19194338	19194339	rs55765434	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs55765434-A	NR	7E-15		0.0256913	[0.019-0.032] unit decrease	Affymetrix [321788] (imputed)	N
731	chr20	19211404	19211405	rs1033546	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs1033546-A	NR	2E-20		0.0298336	[0.024-0.036] unit decrease	Affymetrix [321016] (imputed)	N
731	chr20	19212889	19212890	rs6081541	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	20p11.23	SLC24A3	rs6081541-?		1E-6				Affymetrix [545513]	N
731	chr20	19216526	19216527	rs6136659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs6136659-C	NR	4E-23		0.0464613	[0.037-0.056] unit decrease	Affymetrix [321016] (imputed)	N
731	chr20	19222701	19222702	rs1883941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs1883941-G	NR	1E-22		0.0475342	[0.038-0.057] unit decrease	Affymetrix [321788] (imputed)	N
731	chr20	19241475	19241476	rs4814836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3, RP5-1027G4.3	rs4814836-G	NR	9E-10		0.023122	[0.016-0.031] unit decrease	Affymetrix [321788] (imputed)	N
731	chr20	19241475	19241476	rs4814836	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3, RP5-1027G4.3	rs4814836-G	NR	2E-10		0.0231528	[0.016-0.03] unit decrease	Affymetrix [321016] (imputed)	N
731	chr20	19258890	19258891	rs6136670	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3, RP5-1027G4.3	rs6136670-C	NR	4E-19		0.0293104	[0.023-0.036] unit decrease	Affymetrix [321788] (imputed)	N
731	chr20	19259950	19259951	rs13038837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3, RP5-1027G4.3	rs13038837-A	NR	6E-13		0.021581	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
731	chr20	19261921	19261922	rs3790176	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3, RP5-1027G4.3	rs3790176-A	NR	5E-18		0.0267723	[0.021-0.033] unit increase	Affymetrix [321788] (imputed)	N
732	chr20	19270217	19270218	rs6081559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p11.23	SLC24A3	rs6081559-G	0.371072	2E-9		0.01397076	[0.0094-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
732	chr20	19272209	19272210	rs6035275	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	20p11.23	SLC24A3	rs6035275-?	NR	1E-7	(EA)	12.0	[7.69-16.31] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
732	chr20	19289754	19289755	rs6112307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.23	NR	rs6112307-C	0.649927	1E-34				Affymetrix, Illumina [17210439] (imputed)	N
732	chr20	19289754	19289755	rs6112307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20p11.23	NR	rs6112307-C	0.644929	1E-37		0.025721	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
732	chr20	19290603	19290604	rs117436614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs117436614-T	NR	3E-8		0.0481984	[0.031-0.065] unit decrease	Affymetrix [321788] (imputed)	N
732	chr20	19303785	19303786	rs6081569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20p11.23	SLC24A3	rs6081569-C	0.369507	9E-27		0.024887837	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
732	chr20	19303785	19303786	rs6081569	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20p11.23	SLC24A3	rs6081569-C	0.3697	4E-11		0.02471439	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
732	chr20	19317213	19317214	rs7272275	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	20p11.23	SLC24A3	rs7272275-T	NR	3E-6				Illumina [up to 11995908] (imputed)	N
732	chr20	19320520	19320521	rs7267519	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	20p11.23	SLC24A3	rs7267519-T	NR	3E-6	(AA)			Illumina [up to 11995908] (imputed)	N
732	chr20	19327608	19327609	rs76005533	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	20p11.23	SLC24A3	rs76005533-G	0.9711	9E-6		1.4341	[0.8-2.07] unit decrease	Illumina [9520174] (imputed)	N
732	chr20	19328248	19328249	rs2024618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.23	NR	rs2024618-G	0.359183	3E-11				Affymetrix, Illumina [24588908] (imputed)	N
732	chr20	19332677	19332678	rs62200371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs62200371-A	NR	2E-13		0.0226531	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
732	chr20	19335481	19335482	rs6046012	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20p11.23	SLC24A3	rs6046012-C	NR	7E-10		0.0176098	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
732	chr20	19360119	19360120	rs565444861	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	20p11.23	NR	rs565444861-A	0.0012	3E-8		0.36	[0.23-0.49] unit increase	Affymetrix [at least 12428592] (imputed)	N
732	chr20	19363978	19363979	rs2424234	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	20p11.23	SLC24A3	rs2424234-?	NR	3E-6	(FEV1/FVC decline in non-asthmatics)	0.2113	[0.12-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
733	chr20	19433871	19433872	rs117833372	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	20p11.23		rs117833372-C	NR	4E-8		0.397	[0.26-0.54] unit decrease	Affymetrix [509886] (imputed)	N
733	chr20	19434323	19434324	rs117471436	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	20p11.23		rs117471436-G	NR	4E-8		0.396	[0.25-0.54] unit decrease	Affymetrix [509886] (imputed)	N
733	chr20	19434857	19434858	rs117333800	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	20p11.23		rs117333800-G	NR	5E-8		0.396	[0.25-0.54] unit decrease	Affymetrix [509886] (imputed)	N
733	chr20	19457267	19457268	rs4814857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	20p11.23		rs4814857-G	NR	3E-37		0.1066	[0.09-0.123] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
733	chr20	19457267	19457268	rs4814857	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	20p11.23	SLC24A3	rs4814857-G	NR	6E-26	(female)	1.0668	[1.05-1.08]	Affymetrix [9869154] (imputed)	N
733	chr20	19457267	19457268	rs4814857	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	20p11.23	SLC24A3	rs4814857-G	NR	2E-51	(male)	1.1136	[1.1-1.13]	Affymetrix [9869154] (imputed)	N
733	chr20	19457267	19457268	rs4814857	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	20p11.23	NR	rs4814857-G	NR	2E-59		1.1614		Affymetrix [9869154] (imputed)	N
733	chr20	19457267	19457268	rs4814857	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	20p11.23	SLC24A3	rs4814857-G	NR	2E-70		1.09	[1.08-1.1]	Affymetrix [9869154] (imputed)	N
733	chr20	19457267	19457268	rs4814857	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA	20p11.23	SLC24A3	rs4814857-?	0.158	7E-40		1.184319	[1.15-1.22]	Affymetrix [NR] (imputed)	N
733	chr20	19465088	19465089	rs6035355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20p11.23		rs6035355-A	NR	3E-31		0.0227	[0.019-0.026] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
733	chr20	19465088	19465089	rs6035355	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	20p11.23	NR	rs6035355-?	NR	9E-54				NR [up to 7000000]	N
733	chr20	19465906	19465907	rs6081613	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	20p11.23	SLC24A3	rs6081613-A	0.5068	1E-6	(Japanese)	0.2493	[0.15-0.35] unit increase	Illumina [6200000] (imputed)	N
733	chr20	19465906	19465907	rs6081613	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20p11.23	SLC24A3	rs6081613-A	0.28	2E-13		0.263	[0.18-0.34] unit increase	Affymetrix [~ 9800000] (imputed)	N
733	chr20	19465906	19465907	rs6081613	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	20p11.23	SLC24A3	rs6081613-?	NR	2E-15		1.0695187	[1.05-1.09]	Illumina [13763073] (imputed)	N
733	chr20	19469001	19469002	rs3790227	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p11.23	SLC24A3	rs3790227-A	0.3181	9E-24		0.2685	[0.22-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
733	chr20	19469001	19469002	rs3790227	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	20p11.23	SLC24A3	rs3790227-A	0.5198	3E-6	(Japanese)	0.2423	[0.14-0.34] unit increase	Illumina [6200000] (imputed)	N
733	chr20	19469001	19469002	rs3790227	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20p11.23	SLC24A3	rs3790227-C		6E-6		0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
733	chr20	19469001	19469002	rs3790227	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p11.23	SLC24A3	rs3790227-C		3E-15		0.22	unit decrease	Affymetrix [at least 2696785] (imputed)	N
733	chr20	19469149	19469150	rs3790228	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20p11.23	SLC24A3	rs3790228-G	0.6088	9E-11		0.1759	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
733	chr20	19469684	19469685	rs4814863	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	20p11.23	NR	rs4814863-A	0.375	3E-9		0.103	[0.07-0.136] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
733	chr20	19469816	19469817	rs4814864	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	20p11.23	NR	rs4814864-?	NR	2E-18				NR [up to 7000000]	N
733	chr20	19469816	19469817	rs4814864	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	20p11.23	NR	rs4814864-?	NR	2E-19				NR [up to 7000000]	N
733	chr20	19469816	19469817	rs4814864	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	20p11.23	SLC24A3	rs4814864-C	0.26	2E-19		1.07	[1.06-1.09]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
733	chr20	19475620	19475621	rs1984571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p11.23		rs1984571-?	NR	4E-11				NR [~ 8900000] (imputed)	N
733	chr20	19494800	19494801	rs1109605	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	20p11.23	SLC24A3	rs1109605-T	0.6528	6E-8	(Japanese)	0.2928	[0.19-0.4] unit decrease	Illumina [6200000] (imputed)	N
733	chr20	19494800	19494801	rs1109605	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	20p11.23	SLC24A3	rs1109605-?	NR	1E-8		0.02242	[0.015-0.03] unit increase	Illumina [6108953] (imputed)	N
733	chr20	19499433	19499434	rs113118767	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	20p11.23	SLC24A3	rs113118767-T	0.99	9E-6		4.02	[1.99-8.13]	Illumina [6220060] (imputed)	N
733	chr20	19504903	19504904	rs6515020	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	20p11.23	NR	rs6515020-?	NR	4E-15				NR [up to 7000000]	N
733	chr20	19507730	19507731	rs11696394	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	20p11.23	NR	rs11696394-T	0.4657	2E-8	(East Asian)	0.2355	[0.15-0.32] unit decrease	Illumina [6200000] (imputed)	N
734	chr20	19571580	19571581	rs3790268	20031604	Cheng YC	2009-08-01	Circ Cardiovasc Genet	Genome-wide association scan identifies variants near Matrix Metalloproteinase (MMP) genes on chromosome 11q21-22 strongly associated with serum MMP-1 levels.	Matrix metalloproteinase levels	778 Old Order Amish individuals	NA	20p11.23	SLC24A3	rs3790268-?	NR	3E-7				Affymetrix [338079]	N
734	chr20	19607140	19607141	rs1321348	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.23	RIN2	rs1321348-?	NR	2E-6	(creatine)	0.22998326	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
734	chr20	19616428	19616429	rs4814873	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	20p11.23		rs4814873-C	0.767	3E-9		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
734	chr20	19630764	19630765	rs6046226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20p11.23	Intergenic	rs6046226-A	0.2398	4E-8	(MTAG)	0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
734	chr20	19630764	19630765	rs6046226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p11.23	Intergenic	rs6046226-A	0.2376	3E-9	(MTAG)	0.0092	[0.0063-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
734	chr20	19647526	19647527	rs2424244	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20p11.23		rs2424244-G	0.656	2E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
734	chr20	19648492	19648493	rs16980973	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	20p11.23	SLC24A3	rs16980973-?	NR	2E-10			[NR]	NR [NR] (imputed)	N
734	chr20	19648557	19648558	rs6106115	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	20p11.23	NR	rs6106115-C	0.0775348	4E-8		0.072252154	[0.047-0.098] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
734	chr20	19650323	19650324	rs2424248	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	20p11.23	SLC24A3	rs2424248-G	0.1255	4E-10		0.023	[0.016-0.03] unit increase	NR [NR]	N
734	chr20	19655937	19655938	rs3790286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	20p11.23		rs3790286-?	NR	2E-9				NR [~ 8900000] (imputed)	N
735	chr20	19663292	19663293	rs4814884	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	20p11.23	RIN2	rs4814884-T	0.5391	6E-10		0.012475368	[0.0085-0.0164] unit increase	Affymetrix [11514654] (imputed)	N
735	chr20	19674217	19674218	rs6136813	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Age at smoking initiation in chronic obstructive pulmonary disease	3,397 European ancestry cases	NA	20p11.23	SLC24A3	rs6136813-T	0.26	3E-6		0.043	unit increase	Illumina [~ 6300000] (imputed)	N
735	chr20	19677175	19677176	rs6112527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.23		rs6112527-?	NR	2E-12				NR [~ 8900000] (imputed)	N
735	chr20	19677993	19677994	rs2093108	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p11.23		rs2093108-A	0.6851	5E-8	(conditional-joint)	0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
735	chr20	19701173	19701174	rs873328	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	20p11.23	NR	rs873328-?	NR	1E-6		0.135378	[0.081-0.19] unit increase	NR [13958389] (imputed)	N
735	chr20	19702048	19702049	rs3828002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p11.23		rs3828002-?	NR	8E-11				NR [~ 8900000] (imputed)	N
735	chr20	19721191	19721192	rs12480480	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Cleft lip with or without cleft palate (bilateral vs unilateral)	15 Asian ancestry bilateral cleft lip cases, 184 Asian ancestry unilateral cleft lip cases, 121 Asian ancestry bilateral cleft palate cases, 205 Asian ancestry unilateral cleft palate cases, 13 European ancestry bilateral cleft lip cases, 151 European ancestry unilateral cleft lip cases, 159 European ancestry bilateral cleft palate cases, 315 European ancestry unilateral cleft palate cases, 15 Hispanic bilateral cleft lip cases,167 Hispanic unilateral cleft lip cases, 285 Hispanic bilateral cleft palate cases, 692 Hispanic unilateral cleft palate cases, 1 bilateral cleft lip case, 1 bilateral cleft palate case, 1 unilateral cleft palate case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	20p11.23	NR	rs12480480-?	NR	2E-6		1.49	[1.37-1.62]	Illumina [539000] (imputed)	N
735	chr20	19727037	19727038	rs6046295	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	HDL cholesterol	4,659 Korean ancestry females	5,273 Korean ancestry females	20p11.23	SLC24A3, RIN2	rs6046295-A	0.050214999999999996	4E-6		1.5842	[0.91-2.26] unit increase	Affymetrix [NR] (imputed)	N
735	chr20	19730619	19730620	rs6081731	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.23	RIN2	rs6081731-?	NR	6E-6	(LPE 18:1)	0.17467606	[0.099-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
735	chr20	19739953	19739954	rs16981087	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	20p11.23	SLC24A3	rs16981087-G	0.77	7E-7	(female)	0.22	[0.14-0.3] unit increase	Illumina [7411206] (imputed)	N
735	chr20	19744988	19744988	rs111678496	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	20p11.23	AL121761.2	rs111678496-G	0.336971429	6E-6		0.154765	unit increase	Illumina [6969139] (imputed)	N
735	chr20	19749956	19749957	rs2069126	30944420	Liu L	2019-04-03	Int J Obes (Lond)	Identification of a 1p21 independent functional variant for abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	8,736 European ancestry individuals, 1,541 East Asian ancestry individuals, 445 Hispanic ancestry individuals, 847 African-American ancestry individuals	NA	20p11.23		rs2069126-?	NR	1E-6				Affymetrix, Illumina [12061510] (imputed)	N
735	chr20	19749956	19749957	rs2069126	28224759	Pei YF	2017-02-22	Obesity (Silver Spring)	Genomic variants at 20p11 associated with body fat mass in the European population.	Body fat mass	9,179 European ancestry individuals	NA	20p11.23	SLC24A3, CFAP61	rs2069126-A	0.36	2E-9		0.1	[NR] unit decrease	Affymetrix [6817908] (imputed)	N
735	chr20	19753537	19753538	rs4814894	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20p11.23	NR	rs4814894-A	0.4507	7E-7	(EA)	0.0323	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
735	chr20	19759941	19759942	rs4813371	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	20p11.23	RIN2	rs4813371-T	NR	9E-9		0.09	NR unit increase	Affymetrix, Illumina [12061510] (imputed)	N
735	chr20	19759941	19759942	rs4813371	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	20p11.23	RIN2	rs4813371-T	NR	9E-7				Affymetrix, Illumina [12061510] (imputed)	N
735	chr20	19759941	19759942	rs4813371	30944420	Liu L	2019-04-03	Int J Obes (Lond)	Identification of a 1p21 independent functional variant for abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	8,736 European ancestry individuals, 1,541 East Asian ancestry individuals, 445 Hispanic ancestry individuals, 847 African-American ancestry individuals	NA	20p11.23		rs4813371-?	NR	2E-8				Affymetrix, Illumina [12061510] (imputed)	N
735	chr20	19779174	19779175	rs144265634	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20p11.23	RP1-122P22.2	rs144265634-A	0.0016	7E-6		0.6437	[0.36-0.93] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
736	chr20	19802187	19802188	rs6046346	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.23	RIN2	rs6046346-A	0.0090	5E-6	(Ft4 )	0.04	[NR] ng/dL increase	Illumina [899892]	N
736	chr20	19828461	19828462	rs6106143	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.23	SLC24A3	rs6106143-?	NR	2E-6	(phosphocreatine)	0.89169174	[0.52-1.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
736	chr20	19852249	19852250	rs6046393	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	20p11.23	RIN2, NAT5	rs6046393-T	0.2	2E-6	(CERAD-dr)	0.2954	[0.17-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr20	19852502	19852503	rs6046396	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20p11.23	RIN2	rs6046396-?	NR	4E-7		1.2815	[NR]	Affymetrix [722112]	N
736	chr20	19865955	19865956	rs4814920	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20p11.23	NR	rs4814920-?	NR	3E-6				NR [up to 8466825] (imputed)	N
736	chr20	19899115	19899116	rs423718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.23	RIN2	rs423718-G	0.475349	4E-15		0.018095195	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
736	chr20	19909820	19909821	rs28669331	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	20p11.23	RIN2	rs28669331-C	0.03	6E-6		0.452	[0.26-0.65] unit decrease	Illumina [6379332] (imputed)	N
736	chr20	19915768	19915769	rs181853315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.23	RIN2	rs181853315-T	0.00904199999999999	4E-57		0.20925152	[0.18-0.24] unit increase	Affymetrix [93095623] (imputed)	N
736	chr20	19915768	19915769	rs181853315	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20p11.23	RIN2	rs181853315-T	0.009	3E-17		0.1902425	[0.15-0.23] unit increase	Affymetrix [~ 2500000] (imputed)	N
736	chr20	19915769	19915770	rs78648341	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.23	RIN2	rs78648341-A	0.0148779999999999	2E-25		0.10322025	[0.084-0.123] unit increase	Affymetrix [93095623] (imputed)	N
736	chr20	19917431	19917432	rs6081819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.23	RIN2	rs6081819-A	0.814796	2E-9		0.019409595	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
737	chr20	19945492	19945493	rs6046489	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to valproic acid in genetic generalized epilepsy	410 European ancestry responders, 155 European ancestry non-responders	NA	20p11.23	RIN2	rs6046489-?	NR	7E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
737	chr20	19951943	19951944	rs416425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.23	RIN2	rs416425-C	0.338409	5E-12		0.016310964	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr20	19985969	19985970	rs6112714	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20p11.23	RIN2	rs6112714-A	0.5784	6E-6		0.0328	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr20	20043814	20043815	rs13043489	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs13043489-A	NR	3E-16		0.0276	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
737	chr20	20044758	20044759	rs35829183	25758996	Pirastu N	2015-03-11	Eur J Hum Genet	Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.	White wine liking	381 Carlantino (founder/genetic isolated) individuals, 744 Friuli Venezia Giulia (founder/genetic isolated) individuals, 1,115 Val Borbera (founder/genetic isolated) individuals	1,261 Erasmus Rucphen (founder/genetic isolated) individuals, 335 Silk Road individuals	20p11.23	NR	rs35829183-C	NR	2E-6		0.081	[NR] unit decrease	Illumina [9969492] (imputed)	N
738	chr20	20065822	20065823	rs6112750	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs6112750-T	NR	8E-10		0.024	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
738	chr20	20066700	20066701	rs73125628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20p11.23	C20orf26	rs73125628-T	0.278482	8E-13		0.01771731	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr20	20066700	20066701	rs73125628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20p11.23	C20orf26	rs73125628-T	0.278461	1E-10		0.015859395	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
738	chr20	20066700	20066701	rs73125628	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.23		rs73125628-?	NR	2E-18				NR [~ 8900000] (imputed)	N
738	chr20	20068634	20068635	rs7261425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p11.23	NR	rs7261425-G	0.27840299999999996	3E-8		0.00525148	[0.0034-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
738	chr20	20068634	20068635	rs7261425	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20p11.23	NR	rs7261425-G	0.27840299999999996	3E-8		0.00579738	[0.0037-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
738	chr20	20069825	20069826	rs73125634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p11.23		rs73125634-T	NR	8E-14		0.0125	[0.0092-0.0158] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
738	chr20	20069825	20069826	rs73125634	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p11.23	CFAP61	rs73125634-T	0.2782	5E-20		0.0195	[0.015-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
738	chr20	20073981	20073982	rs67145845	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20p11.23	CFAP61	rs67145845-A	0.2717	9E-6		0.0343	[0.019-0.049] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
738	chr20	20077177	20077178	rs1474754	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p11.23	C20orf26	rs1474754-G	0.7363999999999999	2E-8		1.0216306		Affymetrix [11880941] (imputed)	N
738	chr20	20077896	20077897	rs1155188	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs1155188-G	NR	3E-13		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
738	chr20	20080774	20080775	rs34950733	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20p11.23	NR	rs34950733-G	0.260794	2E-9		0.0447561	[0.03-0.06] unit decrease	Affymetrix [17914406] (imputed)	N
738	chr20	20083880	20083881	rs79961294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs79961294-A	NR	1E-15		0.0343	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
739	chr20	20228903	20228904	rs12480722	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	20p11.23	NR	rs12480722-C		5E-6		0.1624	[0.093-0.232] SD units decrease	NR [10700000] (imputed)	N
740	chr20	20320835	20320836	rs11908058	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	20p11.23	CFAP61	rs11908058-A	0.288	8E-6		0.025	[0.013-0.037] unit decrease	Illumina [621723]	N
740	chr20	20328192	20328193	rs6046807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs6046807-G	NR	5E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr20	20339309	20339310	rs721424	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	20p11.23	NR	rs721424-?		7E-6		90.94	[51.09-130.79] unit decrease	Illumina [498648]	N
740	chr20	20339608	20339609	rs76657242	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p11.23	CFAP61	rs76657242-T	0.0627	5E-12		0.0295	[0.021-0.038] unit decrease	Affymetrix [18391927] (imputed)	N
740	chr20	20344342	20344343	rs6075647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs6075647-G	NR	2E-12		0.0186	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
740	chr20	20346177	20346178	rs6046818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20p11.23		rs6046818-?	NR	8E-10				NR [~ 8900000] (imputed)	N
740	chr20	20348252	20348253	rs8117259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.23		rs8117259-?	NR	8E-16				NR [~ 8900000] (imputed)	N
740	chr20	20368924	20368925	rs6046825	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20p11.23	RALGAPA2	rs6046825-A	0.7143	2E-6		0.0359	[0.021-0.051] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
740	chr20	20369854	20369855	rs6137015	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	20p11.23	RALGAPA2	rs6137015-?	NR	3E-8		0.0136266	[0.0088-0.0184] unit increase	Affymetrix [25921788] (imputed)	N
740	chr20	20405801	20405802	rs6046851	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	20p11.23		rs6046851-?	NR	2E-7		1.1159666	[1.07040349362406-1.163469137869]	Illumina [7827597] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0251507142920947	1E-6	(IGP23)	0.5267	[0.31-0.74] unit decrease	Illumina [~ 2500000] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0251061037895675	8E-6	(IGP34)	0.4924	[0.28-0.71] unit increase	Illumina [~ 2500000] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0251061037895675	7E-7	(IGP33)	0.5397	[0.33-0.75] unit increase	Illumina [~ 2500000] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0250948889928699	1E-6	(IGP25)	0.5296	[0.31-0.75] unit decrease	Illumina [~ 2500000] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0250837167483296	3E-6	(IGP32)	0.5085	[0.29-0.72] unit decrease	Illumina [~ 2500000] (imputed)	N
742	chr20	20634105	20634106	rs6132333	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20p11.23	NR	rs6132333-C	0.0250725390917186	5E-6	(IGP27)	0.5005	[0.29-0.72] unit decrease	Illumina [~ 2500000] (imputed)	N
743	chr20	20735576	20735577	rs6035684	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20p11.23	NR	rs6035684-C	NR	3E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
744	chr20	20848967	20848968	rs6047116	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA		RALGAPA2	rs6047116-G	0.351	2E-6	(DSST)	3.7872	[2.25-5.32] unit decrease	Affymetrix [> 371951] (imputed)	N
744	chr20	20851672	20851673	rs143077495	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p11.23	NR	rs143077495-?	NR	6E-10				Illumina [7760689] (imputed)	N
744	chr20	20856253	20856254	rs6075733	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p11.23	RALGAPA2, KIZ	rs6075733-?	NR	7E-9		0.019084034	[0.013-0.026] unit decrease	Illumina [27896057] (imputed)	N
744	chr20	20952020	20952021	rs75570940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	20p11.23		rs75570940-G	0.101186	2E-8		0.0258246	[0.017-0.035] unit decrease	Illumina [13479924] (imputed)	N
744	chr20	20964987	20964988	rs6106324	30648747	Dudenkov TM	2019-01-16	Clin Pharmacol Ther	Anastrozole Aromatase Inhibitor Plasma Drug Concentration Genome-Wide Association Study: Functional Epistatic Interaction between SLC38A7 and ALPPL2.	Plasma anastrozole concentration in anastrozole-treated estrogen receptor positive breast cancer	634 European ancestry individuals, 40 African ancestry individuals, 13 Asian ancestry individuals	NA	20p11.23	NR	rs6106324-C	0.381	5E-6		0.2473	[0.14-0.35] unit decrease	Illumina [~ 600000] (imputed)	N
745	chr20	20987510	20987511	rs6082278	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	20p11.23	Intergenic	rs6082278-?	NR	4E-6		1.367	[NR]	Affymetrix [492217] (imputed)	N
745	chr20	21063507	21063508	rs112837127	32881892	Lin SH	2020-09-03	PLoS One	Low-frequency variation near common germline susceptibility loci are associated with risk of Ewing sarcoma.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	NA	20p11.23	NR	rs112837127-A	0.032	7E-9		0.186	[0.08-0.37]	Illumina [16367531] (imputed)	N
745	chr20	21081487	21081488	rs2236176	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	20p11.23	NR	rs2236176-?	NR	7E-8		0.03581897	[0.023-0.049] unit increase	Illumina [32062178] (imputed)	N
745	chr20	21081487	21081488	rs2236176	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p11.23	PLK1S1	rs2236176-T	0.185	4E-6		0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
745	chr20	21081487	21081488	rs2236176	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20p11.23	PLK1S1	rs2236176-T	0.151	3E-6	(EA)	0.02	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
745	chr20	21095594	21095595	rs6106336	30093639	Machiela MJ	2018-08-09	Nat Commun	Genome-wide association study identifies multiple new loci associated with Ewing sarcoma susceptibility.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	657 European ancestry cases, 4,078 European ancestry controls	20p11.23	PLK1S1	rs6106336-G	NR	2E-8		1.47151	[1.28674-1.68282]	Illumina [6876682] (imputed)	N
746	chr20	21111709	21111710	rs6075769	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20p11.23	NR	rs6075769-G	0.696122	2E-10		0.0462045	[0.032-0.061] unit decrease	Affymetrix [17914406] (imputed)	N
746	chr20	21122211	21122212	rs6047270	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	20p11.23	Intergenic	rs6047270-T	0.319	8E-7		1.071	[NR]	Illumina [9112387] (imputed)	N
746	chr20	21124666	21124667	rs1884762	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20p11.23	NR	rs1884762-?	NR	8E-11		0.15142	[0.11-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
746	chr20	21124666	21124667	rs1884762	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20p11.23	NR	rs1884762-?	NR	1E-8	(male)	0.21104	[0.14-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
746	chr20	21135596	21135597	rs6035790	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	20p11.23	NR	rs6035790-T	NR	9E-9		5.745	NR z score decrease	NR [NR]	N
746	chr20	21142812	21142813	rs2236178	24925725	Chung SA	2014-06-12	J Am Soc Nephrol	Lupus nephritis susceptibility loci in women with systemic lupus erythematosus.	Lupus nephritis in systemic lupus erythematosus	588 European ancestry cases, 1,412 European ancestry controls	NA	20p11.23	PLK1S1, C20orf19, XRN2, NKX2-4, NKX2-2	rs2236178-?	NR	5E-6	(Additive)	1.4706	[1.27-1.72]	Affymetrix, Illumina [1621689] (imputed)	N
746	chr20	21147895	21147896	rs17736453	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.23	NR	rs17736453-A	NR	1E-13		0.0684	[0.05-0.086] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr20	21151116	21151117	rs6047287	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	20p11.23	KIZ	rs6047287-?		3E-10				NR [6786993] (imputed)	N
746	chr20	21180258	21180259	rs6137287	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20p11.23	C20orf19	rs6137287-T	0.309	4E-10		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
746	chr20	21217975	21217976	rs6082354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p11.23	PLK1S1	rs6082354-A	NR	1E-10		0.0210173	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
746	chr20	21217975	21217976	rs6082354	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20p11.23	KIZ	rs6082354-A	0.3325	1E-32		0.024	[0.02-0.028] unit increase	Affymetrix [18391927] (imputed)	N
746	chr20	21217975	21217976	rs6082354	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20p11.23	NR	rs6082354-C	0.668131	6E-9		0.0586814	[0.038-0.079] unit decrease	Affymetrix [21375087] (imputed)	N
746	chr20	21217975	21217976	rs6082354	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20p11.23	NR	rs6082354-C	0.667419	4E-10		0.0434907	[0.029-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
746	chr20	21220211	21220212	rs17664036	29051540	Marenholz I	2017-10-20	Nat Commun	Genome-wide association study identifies the SERPINB gene cluster as a susceptibility locus for food allergy.	Peanut allergy	230 European ancestry cases, 2,387 European ancestry controls	438 European ancestry cases, 2,510 European ancestry controls	20p11.23	PLK1S1	rs17664036-C	0.059	2E-6		2.02	(discovery)	Illumina [5405832] (imputed)	N
746	chr20	21223662	21223663	rs2252720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p11.23		rs2252720-T	NR	7E-12		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
746	chr20	21223956	21223956	rs398121251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p11.23		rs398121251-GA	NR	1E-29		0.0151	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
746	chr20	21223956	21223956	rs398121251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20p11.23		rs398121251-GA	0.523571	6E-18		0.0174801	[0.014-0.021] unit decrease	Illumina [13479295] (imputed)	N
746	chr20	21223956	21223956	rs398121251	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p11.23	KIZ	rs398121251-?	NR	1E-19		0.02595107	[0.02-0.032] unit decrease	Illumina [27896057] (imputed)	N
746	chr20	21230454	21230455	rs6082358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.23		rs6082358-?	NR	9E-30				NR [~ 8900000] (imputed)	N
746	chr20	21231918	21231919	rs2328621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.23	NR	rs2328621-T	NR	3E-30		0.0329	[0.027-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
746	chr20	21233197	21233198	rs1000177	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	20p11.23	NR	rs1000177-T	0.2227	2E-9		0.08559434	[0.058-0.114] unit increase	NR [NR]	N
747	chr20	21248115	21248116	rs910805	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs autism spectrum disorder (ordinary least squares (OLS))	170,756 MDD cases, 18,381 autism spectrum disorder cases	NA	20p11.23		rs910805-?	NR	5E-8		0.0108	NR unit increase	NR [6057537] (imputed)	N
747	chr20	21248115	21248116	rs910805	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	20p11.23	NR	rs910805-?		1E-10				NR [520857]	N
747	chr20	21248115	21248116	rs910805	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder	46,350 individuals	NA	20p11.23	NR	rs910805-?		2E-9				NR [9087710]	N
747	chr20	21248115	21248116	rs910805	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	20p11.23	KIZ, XRN2, NKX2-2, NKX2-4	rs910805-G	0.24	3E-7		1.0787487	[NR]	Illumina [9112387] (imputed)	N
747	chr20	21249537	21249538	rs6047339	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	20p11.23	NA	rs6047339-T		2E-11		0.013715	[0.0097-0.0177] unit decrease	Illumina [13288253] (imputed)	N
747	chr20	21261511	21261512	rs16982655	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p11.23	NR	rs16982655-?	NR	2E-19				Affymetrix [NR]	N
747	chr20	21269546	21269547	rs7269648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20p11.23		rs7269648-G	NR	7E-11		0.0347	[0.024-0.045] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
747	chr20	21280336	21280337	rs77392915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p11.23		rs77392915-C	NR	4E-8		0.0293	[0.019-0.04] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
747	chr20	21301995	21301996	rs62217925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20p11.22	NR	rs62217925-T	0.052105	4E-13		0.031906	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
747	chr20	21314175	21314176	rs62217928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20p11.22	XRN2	rs62217928-G	0.051884	9E-19		0.0440111	[0.035-0.053] unit increase	Affymetrix [93095623] (imputed)	N
747	chr20	21314175	21314176	rs62217928	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20p11.22	XRN2	rs62217928-G	0.0518960000000001	3E-21		0.047093082	[0.037-0.057] unit increase	Affymetrix [93095623] (imputed)	N
747	chr20	21314175	21314176	rs62217928	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.22	NR	rs62217928-G	0.0509366	2E-23				Affymetrix, Illumina [20825802] (imputed)	N
747	chr20	21328386	21328387	rs202849	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	20p11.22		rs202849-T	0.24541	6E-6		0.035961	[0.02-0.052] unit decrease	Affymetrix [15580782] (imputed)	N
747	chr20	21328951	21328952	rs62217931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20p11.22	NR	rs62217931-A	0.052029	1E-22		0.04014	[0.032-0.048] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
747	chr20	21329949	21329950	rs9917457	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20p11.22	NR	rs9917457-G	0.052036	2E-10		0.026583	[0.018-0.035] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
747	chr20	21329949	21329950	rs9917457	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20p11.22	XRN2	rs9917457-G	0.0532	2E-9		0.04755121	[0.032-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
747	chr20	21341333	21341333	rs138468809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20p11.22	XRN2	rs138468809-AT	0.051545	7E-10		0.031222157	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr20	21341333	21341333	rs138468809	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20p11.22	NR	rs138468809-I	0.0518	1E-25		0.047714	[0.039-0.057] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
747	chr20	21341921	21341922	rs13039420	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.22	NKX2-4	rs13039420-?	NR	4E-6	(pyruvate)	0.90258807	[0.52-1.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
747	chr20	21360527	21360528	rs6047414	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p11.22	XRN2	rs6047414-A	NR	2E-9		0.0201432	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
747	chr20	21362921	21362922	rs16982707	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.22	NR	rs16982707-A	0.943038	5E-12				Affymetrix, Illumina [22063850] (imputed)	N
747	chr20	21362960	21362961	rs62217959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p11.22		rs62217959-?	NR	7E-18				NR [~ 8900000] (imputed)	N
748	chr20	21367740	21367741	rs2296730	32881892	Lin SH	2020-09-03	PLoS One	Low-frequency variation near common germline susceptibility loci are associated with risk of Ewing sarcoma.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	NA	20p11.22	NR	rs2296730-G	0.046	5E-8		2.038	[1.60-2.77]	Illumina [16367531] (imputed)	N
748	chr20	21369660	21369661	rs62219561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.22	NR	rs62219561-A	0.044168	8E-23				Affymetrix, Illumina [24246363] (imputed)	N
748	chr20	21381120	21381121	rs1409818	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p11.22	NA	rs1409818-T	0.1074	3E-12		0.0195	[0.014-0.025] unit increase	NR [~ 27400000] (imputed)	N
748	chr20	21381120	21381121	rs1409818	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	20p11.22	NA	rs1409818-T	0.1074	3E-12		0.0195	[0.014-0.025] unit increase	NR [~ 27400000] (imputed)	N
748	chr20	21385658	21385659	rs8124896	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p11.22	NKX2-4	rs8124896-T	0.899001	8E-9		0.0131677	[0.0087-0.0176] unit decrease	Affymetrix [12370749]	N
748	chr20	21385658	21385659	rs8124896	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.22	NR	rs8124896-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
748	chr20	21385658	21385659	rs8124896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p11.22		rs8124896-?	NR	3E-8				NR [~ 8900000] (imputed)	N
748	chr20	21406031	21406032	rs804372	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20p11.22	RN7SKP140	rs804372-C	NR	4E-8		0.017265	[0.011-0.023] unit increase	Affymetrix [323123] (imputed)	N
748	chr20	21422140	21422141	rs7268790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20p11.22		rs7268790-?	NR	3E-11				NR [~ 8900000] (imputed)	N
748	chr20	21432924	21432925	rs35474358	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	20p11.22		rs35474358-T	0.28684	9E-7		0.036402	[0.022-0.051] unit decrease	Affymetrix [15580782] (imputed)	N
748	chr20	21432924	21432925	rs35474358	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	20p11.22		rs35474358-T	0.28684	1E-6		0.036796	[0.022-0.052] unit decrease	Affymetrix [15580782] (imputed)	N
748	chr20	21438535	21438536	rs148541866	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	20p11.22		rs148541866-T	0.01	1E-10		0.58	[0.4-0.76] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
748	chr20	21456620	21456621	rs76485293	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Aureimonas abundance in stool	5,959 Finnish ancestry individuals	NA	20p11.22		rs76485293-C	0.040658	4E-8		0.0611516	[0.039-0.083] unit increase	Illumina [7980478] (imputed)	N
748	chr20	21466794	21466795	rs13041756	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20p11.22	NKX2.2	rs13041756-C	0.1072	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
748	chr20	21473361	21473362	rs7273292	30327367	Jung SY	2018-10-16	Cancer Prev Res (Phila)	Genome-wide meta-analysis of gene-environmental interaction for insulin-resistance phenotypes and breast cancer risk in postmenopausal women.	Hyperglycemia in higher physical activity	4,976 European ancestry women	NA	20p11.22	NKX2-2	rs7273292-?	NR	4E-8		3.37	[NR]	NR [18717781] (imputed)	N
748	chr20	21484038	21484039	rs8115445	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20p11.22	NR	rs8115445-G	0.122	2E-6		0.255737	[0.15-0.36] unit increase	Illumina [~ 6600000] (imputed)	N
748	chr20	21485246	21485247	rs6137371	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p11.22	NKX2-2	rs6137371-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
748	chr20	21491397	21491398	rs3746741	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	20p11.22	NR	rs3746741-?	NR	4E-6		0.95	[0.9-1.01]	Illumina [539000] (imputed)	N
749	chr20	21533489	21533490	rs56274906	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20p11.22	NR	rs56274906-A	NR	2E-16		0.0259	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
749	chr20	21539563	21539564	rs6047481	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20p11.22	NKX2-2, PAX1	rs6047481-A	0.6709	3E-9		1.0256227		Affymetrix [11880941] (imputed)	N
749	chr20	21541026	21541027	rs12106193	30093639	Machiela MJ	2018-08-09	Nat Commun	Genome-wide association study identifies multiple new loci associated with Ewing sarcoma susceptibility.	Ewing sarcoma	733 European ancestry cases, 1,346 European ancestry controls	657 European ancestry cases, 4,078 European ancestry controls	20p11.22	NKX2-2	rs12106193-C	NR	4E-16		1.75	[1.53-2.00]	Illumina [6876682] (imputed)	N
749	chr20	21555083	21555084	rs2424377	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.22	PAX1	rs2424377-?	NR	8E-6	(adenosine diphosphate)	0.19729008	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
750	chr20	21630279	21630280	rs2424396	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	20p11.22	NR	rs2424396-G	0.08987	4E-6		0.239	[0.14-0.34] unit increase	Illumina [10677593] (imputed)	N
750	chr20	21632544	21632545	rs2424399	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	20p11.22	intergenic	rs2424399-C	0.2346	3E-8	(Nasal width)	0.377	[0.24-0.52] unit increase	Illumina [34985077] (imputed)	N
750	chr20	21687343	21687344	rs17861031	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p11.22	PAX1	rs17861031-?	NR	6E-11		0.026255907	[0.018-0.034] unit decrease	Illumina [27896057] (imputed)	N
750	chr20	21706604	21706604	rs199783889	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	20p11.22	Intergenic	rs199783889-A	0.94	1E-6	(AA)			Illumina [NR] (imputed)	N
750	chr20	21735353	21735356	rs202233001	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	20p11.22	intergenic	rs202233001-?	NR	4E-8		6.76	[3.41-13.38]	Illumina [9380034] (imputed)	N
750	chr20	21735353	21735356	rs202233001	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	20p11.22	PAX1	rs202233001-?	NR	4E-8		6.76	[3.41-13.38]	Illumina [9380034] (imputed)	N
750	chr20	21736297	21736299	rs143244089	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	20p11.22	intergenic	rs143244089-GAA	0.1305	6E-8	(Nasal width)	0.4586	[0.28-0.63] unit decrease	Illumina [34985077] (imputed)	N
751	chr20	21760299	21760300	rs116931652	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p11.22		rs116931652-?	NR	1E-12				NR [~ 8900000] (imputed)	N
751	chr20	21761182	21761183	rs6047620	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs6047620-C	NR	6E-13		0.0918814	NR unit increase	NR [NR] (imputed)	N
751	chr20	21763151	21763152	rs6137441	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20p11.22	PAX1	rs6137441-A	0.0157444453671264	2E-6	(G_Gemmiger_HB)	1.3451	[0.8-1.89] unit decrease	Illumina [7711310] (imputed)	N
751	chr20	21776734	21776735	rs2208312	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	20p11.22	PAX1	rs2208312-T	0.33	2E-7		0.068	[0.043-0.093] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
751	chr20	21781624	21781625	rs6047635	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	3,566 European ancestry individuals	4,680 European ancestry individuals	20p11.22		rs6047635-T	0.09106287	2E-12				Illumina [7417619] (imputed)	N
751	chr20	21785072	21785073	rs6047637	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 31)	3,566 European ancestry individuals	4,680 European ancestry individuals	20p11.22		rs6047637-C	0.243830623	5E-20				Illumina [7417619] (imputed)	N
751	chr20	21785638	21785639	rs6137444	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs6137444-T	NR	3E-41		0.09	NR unit increase	NR [NR] (imputed)	N
751	chr20	21787567	21787568	rs6113382	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	PAX1	rs6113382-A	NR	7E-11		0.128146	NR unit decrease	NR [NR] (imputed)	N
751	chr20	21790860	21790861	rs6137446	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p11.22	NR	rs6137446-A	0.0844044	2E-12		0.0425469	[0.031-0.054] unit decrease	NR [19129689] (imputed)	N
751	chr20	21815191	21815192	rs6113393	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p11.22	NR	rs6113393-C	0.399643	9E-43		0.0650083	[0.056-0.074] unit decrease	NR [19129689] (imputed)	N
751	chr20	21821909	21821910	rs6047663	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	20p11.22	PAX1	rs6047663-G	0.370	2E-15		1.22	1.12-1.34	Affymetrix [435183]	N
751	chr20	21826283	21826284	rs140272884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p11.22		rs140272884-?	NR	4E-16				NR [~ 8900000] (imputed)	N
751	chr20	21853099	21853100	rs2180439	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs2180439-T	NR	7E-87		0.12	NR unit increase	NR [NR] (imputed)	N
751	chr20	21853099	21853100	rs2180439	22032556	Brockschmidt FF	2011-10-27	Br J Dermatol	Susceptibility variants on chromosome 7p21.1 suggest HDAC9 as a new candidate gene for male-pattern baldness.	Male-pattern baldness	581 European ancestry male cases, 617 European ancestry male controls	461 European ancestry male cases, 151 European ancestry male controls	20p11.22	intergenic	rs2180439-?	NR	4E-17		2.08	[1.76-2.47]	Illumina [560387]	N
751	chr20	21853099	21853100	rs2180439	18849994	Hillmer AM	2008-10-12	Nat Genet	Susceptibility variants for male-pattern baldness on chromosome 20p11.	Male-pattern baldness	296 European ancestry cases, 347 European ancestry controls	319 European ancestry cases, 234 European ancestry controls	20p11.22	BQ013595, PAX1, BE789145	rs2180439-C	0.43	3E-15		1.82	[1.45-2.30]	Illumina [531695]	N
751	chr20	21868712	21868713	rs6082544	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	20p11.22	PAX1, FOXA2	rs6082544-?	NR	4E-9		0.023	[0.030-0.015] unit decrease	Illumina [12039491] (imputed)	N
751	chr20	21870952	21870953	rs6047703	30395268	Khanshour AM	2018-11-01	Hum Mol Genet	Genome-wide meta-analysis and replication studies in multiple ethnicities identify novel adolescent idiopathic scoliosis susceptibility loci.	Adolescent idiopathic scoliosis	2,295 East Asian ancestry cases, 11,084 East Asian ancestry controls, 1,503 European ancestry cases, 18,594 European ancestry controls	2,737 East Asian ancestry cases, 56,815 East Asian ancestry controls, 1,421 European ancestry cases, 1,966 European ancestry controls	20p11.22	PAX1	rs6047703-?		2E-11		1.2048193	[1.15-1.28]	Affymetrix, Illumina [3493832] (imputed)	N
751	chr20	21880044	21880045	rs1998076	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs1998076-G	NR	5E-87		0.12	NR unit increase	NR [NR] (imputed)	N
751	chr20	21884692	21884693	rs6137473	25784220	Sharma S	2015-03-18	Nat Commun	A PAX1 enhancer locus is associated with susceptibility to idiopathic scoliosis in females.	Adolescent idiopathic scoliosis	371 European ancestry female cases, 76 European ancestry male cases, 533 European ancestry female controls, 204 European ancestry male controls	715 European, Black, Hispanic and other ancestry trios, 216 European ancestry cases, 336 European ancestry controls, 1,050 Japanese ancestry female cases, 1,474 Japanese ancestry female controls	20p11.22	FOXA2, PAX1	rs6137473-G	0.39	3E-8		1.3	[1.19-1.41]	Illumina [727670]	N
751	chr20	21885618	21885619	rs1884589	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20p11.22	PAX1	rs1884589-A	0.434151	2E-11		0.0129945	[0.0092-0.0168] unit increase	Affymetrix [NR] (imputed)	N
751	chr20	21885804	21885805	rs1884590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20p11.22	NR	rs1884590-G	NR	4E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr20	21893451	21893452	rs77410716	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	20p11.22	PAX1	rs77410716-C	NR	5E-45		0.284588	[0.24-0.32] unit increase	Affymetrix [27512692] (imputed)	N
752	chr20	21894004	21894005	rs6047716	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	20p11.22	PAX1, LINC01432	rs6047716-C	0.47	1E-11		1.15	[1.11-1.20]	Illumina [9332516] (imputed)	N
752	chr20	21894004	21894005	rs6047716	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	20p11.22	PAX1/LINC01432	rs6047716-C	0.475179	2E-9		1.15	[1.10-1.20]	Illumina [9332516] (imputed)	N
752	chr20	21894763	21894764	rs6035986	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs6035986-T	NR	1E-87		0.123564	NR unit increase	NR [NR] (imputed)	N
752	chr20	21913283	21913284	rs6075862	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	20p11.22		rs6075862-?	NR	8E-9				NR [9705931] (imputed)	N
752	chr20	21915319	21915320	rs73122178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.22	NR	rs73122178-A	NR	1E-10		0.0401	[0.028-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr20	21941644	21941644	rs552649178	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	20p11.22	PAX1	rs552649178-G	NR	6E-59		0.269287	[0.24-0.3] unit decrease	Affymetrix [27512692] (imputed)	N
752	chr20	21943020	21943021	rs201542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20p11.22		rs201542-A	NR	4E-8		0.0126	[0.0081-0.0171] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
752	chr20	21943497	21943498	rs562395711	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	20p11.22		rs562395711-?	NR	5E-6		1.2382089	[1.12967865252119-1.35716572386474]	Illumina [7827597] (imputed)	N
752	chr20	21963057	21963058	rs2424421	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20p11.22	NR	rs2424421-C	0.429	5E-12				NR [9056863] (imputed)	N
752	chr20	21971779	21971780	rs201547	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p11.22		rs201547-C	0.45	1E-13		7.44	z score increase	Affymetrix [9061022] (imputed)	N
752	chr20	21971779	21971780	rs201547	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20p11.22		rs201547-C	0.45	7E-11		6.53	z score increase	Affymetrix [9061022] (imputed)	N
752	chr20	21988333	21988334	rs62219289	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs62219289-G	NR	1E-9		0.07558	NR unit decrease	NR [NR] (imputed)	N
752	chr20	21989601	21989602	rs78297031	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs78297031-C	NR	4E-9		0.112933	NR unit decrease	NR [NR] (imputed)	N
752	chr20	21999212	21999213	rs201561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p11.22		rs201561-?	NR	5E-319				NR [~ 8900000] (imputed)	N
752	chr20	22000280	22000281	rs201563	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs201563-T	NR	3E-102		0.13	NR unit increase	NR [NR] (imputed)	N
752	chr20	22000280	22000281	rs201563	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	20p11.22	FOXA2, PAX1	rs201563-?	NR	3E-81		1.547	[1.479-1.619]	Illumina [13436641] (imputed)	N
752	chr20	22013513	22013514	rs201571	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs201571-T	NR	7E-88		0.13	NR unit increase	NR [NR] (imputed)	N
752	chr20	22016585	22016586	rs17739590	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p11.22	NR	rs17739590-A	0.06615	4E-36		0.0945247	[0.08-0.109] unit decrease	NR [19129689] (imputed)	N
753	chr20	22024616	22024617	rs528311121	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	20p11.22		rs528311121-?	NR	6E-6		1.2359265	[1.12759631835194-1.3546640632785]	Illumina [7827597] (imputed)	N
753	chr20	22033818	22033819	rs201593	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs201593-A	NR	1E-103		0.133999	NR unit increase	NR [NR] (imputed)	N
753	chr20	22035196	22035197	rs16983329	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 54)	2,595 Tanzanian ancestry individuals	NA	20p11.22		rs16983329-?	NR	2E-8				Illumina [NR] (imputed)	N
753	chr20	22035196	22035197	rs16983329	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	20p11.22	PAX1	rs16983329-A	0.03	2E-9	(left alare-right alare distance)	0.257	NR unit increase	Illumina [7029494] (imputed)	N
753	chr20	22037408	22037409	rs12625546	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs12625546-T	NR	1E-9		0.0954443	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22037574	22037575	rs6047844	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs6047844-C	NR	1E-103		0.13	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22037574	22037575	rs6047844	22693459	Li R	2012-05-31	PLoS Genet	Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.	Male-pattern baldness	3,891 European ancestry cases, 8,915 European ancestry controls	NA	20p11.22	PAX1, FOXA2	rs6047844-T	0.460	2E-39		1.6	[1.49-1.72]	Affymetrix, Illumina [2391230] (imputed)	N
753	chr20	22037979	22037979	rs11087368	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	20p11.22	PAX1	rs11087368-G	NR	1E-105		0.30838	[0.28-0.34] unit decrease	Affymetrix [27512692] (imputed)	N
753	chr20	22041576	22041577	rs927833	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nostril size)	6,169 Latin American individuals	NA	20p11.22		rs927833-?	NR	1E-8				Illumina [8703729] (imputed)	N
753	chr20	22041576	22041577	rs927833	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	middle facial morphology traits (quantitative measurement)	2955 Latin American ancestry individuals.	NA	20p11.22	NR	rs927833-?	NR	6E-7	(Nose wing breadth)			Illumina [9117642] (imputed)	N
753	chr20	22041576	22041577	rs927833	27193062	Adhikari K	2016-05-19	Nat Commun	A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.	facial morphology traits (multivariate analysis)	5,958 Latin American ancestry individuals.	NA	20p11.22	PAX1	rs927833-?		2E-8				Illumina [9117642] (imputed)	N
753	chr20	22043887	22043888	rs75434917	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs75434917-T	NR	1E-18		0.0994926	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22047323	22047324	rs17752365	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs17752365-A	NR	2E-11		0.0716704	NR unit increase	NR [NR] (imputed)	N
753	chr20	22050502	22050503	rs1160312	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	20p11.22	LINC01432	rs1160312-?		2E-9	(Hair loss pattern at 40 (categorical))	0.1939	[0.13-0.26] unit decrease	Illumina [9499600] (imputed)	N
753	chr20	22050502	22050503	rs1160312	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Hair morphology traits	4,988 Spanish ancestry individuals	NA	20p11.22	LINC01432	rs1160312-?		2E-8	(Hair loss pattern at 40 (binary))	0.36516687	[0.24-0.49] unit increase	Illumina [9499600] (imputed)	N
753	chr20	22050502	22050503	rs1160312	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs1160312-G	NR	3E-98		0.13	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22050502	22050503	rs1160312	18849991	Richards JB	2008-10-12	Nat Genet	Male-pattern baldness susceptibility locus at 20p11.	Male-pattern baldness	578 European ancestry cases, 547 European ancestry controls	1,351 European ancestry cases, 2,485 European ancestry controls	20p11.22	PAX1	rs1160312-A	0.43	1E-14	(males)	1.6	[1.42-1.80]	Affymetrix [370102]	N
753	chr20	22057414	22057415	rs6113491	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs6113491-C	NR	2E-95		0.13	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22058505	22058506	rs6113492	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	20p11.22		rs6113492-G	0.43	1E-162		0.51	[0.47-0.55] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
753	chr20	22059195	22059196	rs143865354	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	20p11.22	NR	rs143865354-?	NR	2E-6		4.2	[3.15-5.61]	Illumina [539000] (imputed)	N
753	chr20	22075641	22075642	rs6113507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20p11.22		rs6113507-?	NR	2E-14				NR [~ 8900000] (imputed)	N
753	chr20	22083344	22083345	rs139047235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20p11.22		rs139047235-?	NR	3E-8				NR [~ 8900000] (imputed)	N
753	chr20	22093684	22093685	rs6047901	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20p11.22	NR	rs6047901-C	0.344514	5E-117		0.10182	[0.093-0.11] unit decrease	NR [19129689] (imputed)	N
753	chr20	22100069	22100070	rs7362397	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs7362397-T	NR	3E-65		0.114754	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22100071	22100072	rs7362398	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs7362398-T	NR	3E-65		0.114754	NR unit decrease	NR [NR] (imputed)	N
753	chr20	22100541	22100542	rs28897169	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	20p11.22	LOC100270679	rs28897169-T	0.393893	7E-22		1.0435863	NR	Affymetrix [~ 9600000] (imputed)	N
753	chr20	22106656	22106657	rs79284724	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.22	NR	rs79284724-G	NR	1E-12		0.0813506	NR unit increase	NR [NR] (imputed)	N
753	chr20	22119957	22119958	rs184267824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p11.22		rs184267824-?	NR	4E-9				NR [~ 8900000] (imputed)	N
753	chr20	22144774	22144775	rs804553	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20p11.22	FOXA2	rs804553-T	0.497363	6E-9		0.0114623	[0.0076-0.0153] unit increase	Affymetrix [NR] (imputed)	N
754	chr20	22169580	22169581	rs183935486	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	20p11.22	NR	rs183935486-?	NR	5E-6		1.8244	[0.77-2.88] unit increase	Illumina [at least 560000] (imputed)	N
754	chr20	22197956	22197957	rs575778973	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	20p11.22		rs575778973-?	NR	6E-6		1.2269714	[1.12322815621799-1.34029656010261]	Illumina [7827597] (imputed)	N
754	chr20	22242879	22242880	rs144149795	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair/balding pattern: Pattern 1 (UKB data field 2395_1)	66,172 European ancestry cases, 140,864 European ancestry controls	NA	20p11.22		rs144149795-G	0.005385	6E-11		0.29	[0.2-0.38] unit increase	NR [11842647] (imputed)	N
754	chr20	22242879	22242880	rs144149795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20p11.22		rs144149795-?	NR	4E-12				NR [~ 8900000] (imputed)	N
754	chr20	22245007	22245008	rs1415802	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	20p11.22	NR	rs1415802-T	0.37674	6E-9		0.037701394	[0.025-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
754	chr20	22245007	22245008	rs1415802	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	20p11.22	Intergenic	rs1415802-T	0.6183	5E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
754	chr20	22246449	22246450	rs6047982	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p11.22	NR	rs6047982-?	NR	5E-8		5.451	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
754	chr20	22267057	22267058	rs1028444	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	20p11.22	intergenic	rs1028444-?		5E-6	(M)	26.33	[14.1-38.56] unit increase	Illumina [693128]	N
755	chr20	22284320	22284321	rs199791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20p11.21	Intergenic	rs199791-T	0.5946	2E-10	(MTAG)	0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
755	chr20	22284320	22284321	rs199791	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.21	NR	rs199791-C	NR	9E-23		0.0614582	NR unit increase	NR [NR] (imputed)	N
755	chr20	22284722	22284723	rs4813454	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	20p11.21	PAX1	rs4813454-T	0.38	2E-11	(left alare-right alare distance)	0.095	NR unit decrease	Illumina [7029494] (imputed)	N
755	chr20	22286429	22286430	rs6113624	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 21)	4,680 European ancestry individuals	3,566 European ancestry individuals	20p11.21		rs6113624-A	0.401521646	7E-17				Illumina [7417619] (imputed)	N
755	chr20	22291138	22291139	rs1884903	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20p11.21	Intergenic	rs1884903-A	0.5645	4E-9	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
755	chr20	22310688	22310689	rs55640000	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p11.21		rs55640000-T	0.6472	1E-10	(conditional-joint)	0.0094	[0.0065-0.0123] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
755	chr20	22317309	22317310	rs175325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20p11.21		rs175325-?	NR	2E-9				NR [~ 8900000] (imputed)	N
755	chr20	22317309	22317310	rs175325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20p11.21		rs175325-A	0.5966	2E-12		0.01	[0.0073-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
755	chr20	22317309	22317310	rs175325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20p11.21	Intergenic	rs175325-A	0.5966	2E-12	(MTAG)	0.0094	[0.0069-0.0119] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
755	chr20	22323857	22323858	rs199823	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20p11.21	NR	rs199823-A	NR	1E-12		0.0482336	NR unit increase	NR [NR] (imputed)	N
755	chr20	22373677	22373678	rs169225	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	20p11.21		rs169225-?	NR	7E-7	(serous_hg)	1.24		Illumina [11595112] (imputed)	N
755	chr20	22375754	22375755	rs199766	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20p11.21	LINC01427, LOC284788	rs199766-?	NR	1E-7		0.015634164	[0.0099-0.0214] unit increase	Illumina [27896057] (imputed)	N
755	chr20	22377027	22377028	rs138656833	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	20p11.21	NR	rs138656833-?	NR	8E-6		0.2418	[0.14-0.35] unit decrease	Illumina [at least 560000] (imputed)	N
755	chr20	22392053	22392054	rs13038903	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs13038903-G	NR	4E-22		0.1194	[0.095-0.144] unit decrease	Affymetrix [9000000] (imputed)	N
755	chr20	22392275	22392275	rs201986256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20p11.21		rs201986256-AG	NR	8E-9		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
756	chr20	22428283	22428284	rs7274134	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20p11.21	NR	rs7274134-C	0.6695	2E-9		0.0247	[0.017-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
756	chr20	22430240	22430241	rs73085586	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	20p11.21	FOXA2	rs73085586-G	0.644	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
756	chr20	22430240	22430241	rs73085586	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20p11.21	FOXA2	rs73085586-G	0.798751	3E-8		0.00970779	[0.0063-0.0131] unit decrease	Affymetrix [12370749]	N
756	chr20	22433292	22433293	rs186915841	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p11.21	NR	rs186915841-C	0.998167	8E-11		0.0691898	[0.048-0.09] unit increase	Affymetrix [16582909] (imputed)	N
756	chr20	22433292	22433293	rs186915841	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20p11.21	NR	rs186915841-C	0.998139	7E-11		0.0977761	[0.069-0.126] unit increase	Affymetrix [16582621] (imputed)	N
756	chr20	22433292	22433293	rs186915841	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20p11.21	NR	rs186915841-C	0.998167	2E-8		0.0681651	[0.045-0.091] unit increase	Affymetrix [16582965] (imputed)	N
756	chr20	22433292	22433293	rs186915841	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20p11.21	NR	rs186915841-C	0.998139	6E-9		0.09357	[0.063-0.124] unit increase	Affymetrix [16582614] (imputed)	N
756	chr20	22435748	22435749	rs6515236	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	20p11.21	LOC105372562, FOXA2	rs6515236-C	0.249330468323155	3E-8		0.0504	[0.033-0.068] unit decrease	NR [5035015] (imputed)	N
756	chr20	22448536	22448537	rs4607001	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	20p11.21	LOC105372563	rs4607001-T	0.20164300000000002	9E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [~ 11700000] (imputed)	N
756	chr20	22448536	22448537	rs4607001	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	20p11.21	LOC105372563	rs4607001-T	0.20	1E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
756	chr20	22488753	22488754	rs6082726	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6082726-G	NR	8E-20		0.0223	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
756	chr20	22532775	22532776	rs60431508	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	20p11.21		rs60431508-A	NR	1E-6		0.5764	unit increase	Illumina [8524982] (imputed)	N
756	chr20	22532775	22532776	rs60431508	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	20p11.21		rs60431508-A	NR	3E-6		0.7025	unit increase	Illumina [NR] (imputed)	N
756	chr20	22540914	22540915	rs1203876	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20p11.21	LINC00261, FOXA2	rs1203876-C	0.046164	9E-10		0.038072	[0.026-0.05] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
757	chr20	22557098	22557099	rs6113722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	20p11.21		rs6113722-A	0.206055	3E-10		0.0266998	[0.018-0.035] unit decrease	Illumina [13476509] (imputed)	N
757	chr20	22557098	22557099	rs6113722	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	20p11.21	LINC00261	rs6113722-A	0.0449	8E-25		0.0424	[0.034-0.051] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
757	chr20	22557098	22557099	rs6113722	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	20p11.21	FOXA2	rs6113722-G	0.932817	7E-9		0.0461	[0.03-0.062] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
757	chr20	22557098	22557099	rs6113722	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	20p11.21	FOXA2	rs6113722-G	0.932817	2E-12		0.036348	[0.026-0.046] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
757	chr20	22557098	22557099	rs6113722	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	20p11.21	NR	rs6113722-?	NR	1E-6		0.07846487	[0.047-0.11] unit decrease	Illumina [29713514] (imputed)	N
757	chr20	22559600	22559601	rs6048205	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	20p11.21	NR	rs6048205-G	NR	1E-17		0.0511	[0.039-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
757	chr20	22559600	22559601	rs6048205	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20p11.21	NR	rs6048205-A	0.957295	4E-8		0.0120962	[0.008-0.0162] unit increase	Affymetrix [16582909] (imputed)	N
757	chr20	22559600	22559601	rs6048205	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20p11.21	NR	rs6048205-A	0.957295	6E-9		0.0140424	[0.0095-0.0186] unit increase	Affymetrix [16582965] (imputed)	N
757	chr20	22559600	22559601	rs6048205	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	20p11.21	NR	rs6048205-?	NR	2E-6		0.07356501	[0.043-0.104] unit decrease	Illumina [29713514] (imputed)	N
757	chr20	22559600	22559601	rs6048205	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	20p11.21	FOXA2	rs6048205-A	0.9427	2E-12		0.002204	[-0.00002-0.00442] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
757	chr20	22559600	22559601	rs6048205	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	20p11.21	FOXA2	rs6048205-A	0.942	6E-9		0.0327	[0.022-0.044] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
757	chr20	22560931	22560932	rs72470563	33842983	Chung RH	2021-04-12	Diabetologia	Multi-omics analysis identifies CpGs near G6PC2 mediating the effects of genetic variants on fasting glucose.	Fasting blood glucose	18,122 Han Chinese ancestry individuals	1,989 Han Chinese ancestry individuals	20p11.21	FOXA2	rs72470563-A	0.14	3E-10		0.091	[0.064-0.118] unit decrease	Affymetrix [774398] (imputed)	N
757	chr20	22561952	22561953	rs66483039	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs66483039-A	NR	2E-26		0.0734	[0.06-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	20p11.21		rs3833331-A	0.19079999999999997	6E-22		0.0968	[0.077-0.117] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	20p11.21		rs3833331-A	0.046599999999999975	7E-8		0.1333	[0.085-0.182] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	16,018 Hispanic or Latin American individuals	NA	20p11.21		rs3833331-A	0.08399999999999996	1E-8		0.1151	[0.075-0.155] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	12,195 African American or Afro-Caribbean individuals	NA	20p11.21		rs3833331-A	0.34340000000000004	3E-8		0.0805	[0.052-0.109] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	20p11.21		rs3833331-AG	NR	1E-23		0.0365	[0.029-0.044] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	20p11.21	FOXA2	rs3833331-A	0.9119	6E-8		0.0548	[0.035-0.075] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
757	chr20	22562326	22562326	rs3833331	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	20p11.21	FOXA2	rs3833331-A	0.6518	2E-9		0.0405	[0.026-0.055] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
757	chr20	22567607	22567608	rs1337918	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	35,619 East Asian ancestry individuals	NA	20p11.21	LINC01384	rs1337918-A	0.158	2E-16		0.0509	[0.039-0.062] unit decrease	Affymetrix, Illumina [15438438] (imputed)	N
757	chr20	22567941	22567942	rs1209523	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	20p11.21	NR	rs1209523-?	NR	4E-7		0.06732758	[0.041-0.093] unit decrease	Illumina [29713514] (imputed)	N
757	chr20	22567941	22567942	rs1209523	20152958	Xing C	2010-02-11	Am J Hum Genet	A weighted false discovery rate control procedure reveals alleles at FOXA2 that influence fasting glucose levels.	Fasting plasma glucose	2,029 African American individuals, 7,428 European ancestry individuals	1,571 African American individuals, 3,825 European ancestry individuals	20p11.21	FOXA2	rs1209523-?	0.043	2E-11				Affymetrix [814004]	N
757	chr20	22581267	22581268	rs6048216	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Fasting blood glucose	6,457 African American individuals, 13,556 Hispanic/Latino individuals, 1,918 Asian ancestry individuals, 1,400 Native Hawaiian ancestry individuals, 412 Native American ancestry individuals, 168 individuals	NA	20p11.21	NR	rs6048216-?	NR	3E-8		0.07098914	[0.046-0.096] unit decrease	Illumina [29713514] (imputed)	N
757	chr20	22581267	22581268	rs6048216	25187374	Hwang JY	2014-09-03	Diabetes	Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians.	Fasting plasma glucose	24,740 East Asian ancestry individuals	21,345 East Asian ancestry individuals	20p11.21	FOXA2	rs6048216-?	NR	2E-12		0.095	[0.070-0.120] unit increase	Affymetrix, Illumina [up to 2315813] (imputed)	N
757	chr20	22590834	22590835	rs1203930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	20p11.21		rs1203930-G	0.767061937	6E-9		0.17779724	[0.12-0.24] unit increase	Illumina [13429980] (imputed)	N
757	chr20	22592429	22592430	rs1203936	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	20p11.21	LINC01384, SSTR4	rs1203936-?	NR	2E-13		0.0407	[0.03-0.052] unit increase novel	Illumina [6108953] (imputed)	N
757	chr20	22596008	22596009	rs397779571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	20p11.21		rs397779571-T	NR	6E-9		0.1775	[0.12-0.24] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
757	chr20	22605696	22605697	rs1203949	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	20p11.21	LINC01384, LINC01747	rs1203949-C	0.769069310578573	3E-28		0.0599	[0.049-0.07] SD increase	Illumina [22400000] (imputed)	N
757	chr20	22630515	22630516	rs201295667	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Hypothyroidism	17,558 European ancestry cases, 117,083 European ancestry controls	NA	20p11.21	FOXA2, SSTR4	rs201295667-?	NR	5E-10		1.1086475	[1.07-1.15]	Illumina [13676411] (imputed)	N
757	chr20	22632577	22632582	rs10534088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	20p11.21		rs10534088-G	NR	2E-12		0.2023	[0.15-0.26] unit decrease	Affymetrix, Illumina [25841617] (imputed)	N
757	chr20	22672419	22672420	rs6137726	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	20p11.21	SSTR4	rs6137726-?		9E-7				Illumina [859311]	N
757	chr20	22675363	22675364	rs118153960	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs118153960-T	NR	7E-13		0.0378	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
758	chr20	22693135	22693136	rs2404489	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20p11.21		rs2404489-T	0.29	1E-12		7.13	z score increase	Affymetrix [9061022] (imputed)	N
758	chr20	22704004	22704005	rs6132543	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Thrombomodulin levels	21,758 European ancestry individuals	9,173 individuals	20p11.21		rs6132543-A	0.31	1E-9		0.0586	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
758	chr20	22740896	22740897	rs2424460	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Age of smoking initiation	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	20p11.21	NR	rs2424460-?		3E-6				Illumina [1211988] (imputed)	N
758	chr20	22778324	22778325	rs1997880	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	20p11.21		rs1997880-C	NR	9E-6		4.449483	z score increase	Affymetrix, Illumina [NR] (imputed)	N
758	chr20	22782177	22782178	rs6075967	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6075967-A	NR	3E-9		0.0305	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
758	chr20	22786019	22786020	rs7272287	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs7272287-A	NR	1E-9		0.02	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
758	chr20	22786029	22786030	rs7272134	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	20p11.21	NR	rs7272134-A	NR	2E-6		0.112	[0.066-0.158] unit increase	Illumina [11133794] (imputed)	N
758	chr20	22787621	22787622	rs7267722	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	20p11.21	FOXA2	rs7267722-?		1E-7				Illumina [479403]	N
758	chr20	22805060	22805061	rs2207173	26704534	Sapkota BR	2015-12-15	J Steroid Biochem Mol Biol	Genome-wide association study of 25(OH) Vitamin D concentrations in Punjabi Sikhs: Results of the Asian Indian diabetic heart study.	Vitamin D levels	1,387 Punjabi Sikh ancestry individuals	2,151 Punjabi Sikh ancestry individuals	20p11.21	SSTR4, FOXA2	rs2207173-G	0.29	4E-9		0.13	[0.08-0.17] unit decrease	Illumina [5904251] (imputed)	N
759	chr20	22808891	22808892	rs113252684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs113252684-T	NR	5E-35		0.1005	[0.085-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr20	22817609	22817610	rs118119886	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs118119886-C	NR	7E-10		0.0574	[0.039-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
759	chr20	22836201	22836202	rs139045492	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	20p11.21	SSTR4	rs139045492-A	NR	6E-9		0.695	[0.46-0.93] unit decrease	Illumina [7410776] (imputed)	N
759	chr20	22887256	22887257	rs6075982	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	SSTR4	rs6075982-A	0.303	3E-6	(Diet protein )	0.04	[NR] g/d increase	Illumina [899892]	N
759	chr20	22903507	22903508	rs17681712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs17681712-C	NR	5E-60		0.1412	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
760	chr20	22958864	22958865	rs2424488	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2424488-G	NR	9E-16		0.0444	[0.034-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
760	chr20	22982086	22982087	rs11696756	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	20p11.21	SSTR4	rs11696756-A		3E-6		1.39	[1.03-1.86]	Affymetrix, Illumina [NR] (imputed)	N
760	chr20	22982086	22982087	rs11696756	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	20p11.21	SSTR4	rs11696756-A		2E-6	(EA)	1.51	[1.04-2.17]	Affymetrix, Illumina [NR] (imputed)	N
760	chr20	22989048	22989049	rs1360407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs1360407-T	NR	2E-11		0.028	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
760	chr20	23007274	23007275	rs117125393	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117125393-T	NR	4E-14		0.0621	[0.046-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
760	chr20	23009443	23009444	rs220990	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20p11.21	NR	rs220990-?	NR	1E-6		4.859	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
760	chr20	23021777	23021778	rs2567614	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20p11.21	Intergenic	rs2567614-T	0.4482	3E-8	(MTAG)	0.0127	[0.0082-0.0172] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
760	chr20	23027412	23027413	rs3176123	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	20p11.21	THBD	rs3176123-T	0.81	6E-46		0.3	unit decrease	Illumina [5270624] (imputed)	N
760	chr20	23028723	23028724	rs1042579	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Thrombomodulin levels	21,758 European ancestry individuals	9,173 individuals	20p11.21		rs1042579-A	0.2	2E-318		0.3965	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
760	chr20	23028723	23028724	rs1042579	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	20p11.21	NR	rs1042579-?	NR	3E-11	(TM)	0.410123	[0.29-0.53] unit increase	Illumina [11901634] (imputed)	N
760	chr20	23031655	23031656	rs3176130	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	20p11.21	THBD	rs3176130-?	NR	2E-7				Affymetrix [5486770] (imputed)	N
760	chr20	23038073	23038074	rs148791220	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20p11.21	NR	rs148791220-?	NR	4E-8				Illumina [7760689] (imputed)	N
760	chr20	23048732	23048733	rs2424515	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2424515-G	NR	4E-18		0.0415	[0.032-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
760	chr20	23050805	23050806	rs2144940	26888256	Hernandez W	2016-02-17	Blood	Novel genetic predictors of venous thromboembolism risk in African Americans.	Venous thromboembolism	146 African American cases, 432 African American controls	94 African American cases, 65 African American controls	20p11.21	THBD, CD93	rs2144940-C	0.17	2E-8		2.18	[1.6-2.9]	Illumina [10690342] (imputed)	N
760	chr20	23057481	23057482	rs1998081	26888256	Hernandez W	2016-02-17	Blood	Novel genetic predictors of venous thromboembolism risk in African Americans.	Venous thromboembolism	146 African American cases, 432 African American controls	94 African American cases, 65 African American controls	20p11.21	THBD, CD93	rs1998081-T	0.14	5E-8		2.28	[1.6-3.1]	Illumina [10690342] (imputed)	N
761	chr20	23071030	23071031	rs6048544	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		20p11.21	intergenic	rs6048544-A	0.137	6E-6		0.541	[0.31-0.77] unit increase	Illumina [640625] (imputed)	N
761	chr20	23071030	23071031	rs6048544	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		20p11.21	intergenic	rs6048544-A	0.136619	8E-6		0.534229	[0.3-0.76] unit increase	Illumina [640625] (imputed)	N
761	chr20	23082107	23082108	rs844820	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs844820-G	NR	9E-15		0.0308	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
761	chr20	23082107	23082108	rs844820	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20p11.21	NR	rs844820-A	0.115	8E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
761	chr20	23097879	23097880	rs1320561	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	LOC200261, CD93	rs1320561-G	0.395	1E-6	(Leptin )	0.03	[NR] ng/mL increase	Illumina [899892]	N
761	chr20	23101724	23101725	rs74582442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs74582442-G	NR	1E-51		0.0607	[0.053-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
761	chr20	23118274	23118275	rs73901922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs73901922-A	NR	2E-25		0.0706	[0.057-0.084] unit increase	Affymetrix [9000000] (imputed)	N
761	chr20	23133960	23133961	rs117893821	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117893821-C	NR	4E-24		0.0776	[0.063-0.092] unit increase	Affymetrix [9000000] (imputed)	N
761	chr20	23136950	23136951	rs17750117	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs17750117-A	NR	4E-10		0.0531	[0.036-0.07] unit increase	Affymetrix [9000000] (imputed)	N
761	chr20	23141654	23141655	rs844917	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	20p11.21	CD93	rs844917-A	0.041	6E-6		0.111	[0.064-0.158] unit increase	Illumina [747076]	N
761	chr20	23158335	23158336	rs117583211	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	20p11.21	NR	rs117583211-?	NR	1E-6		0.6067	[0.38-0.84] unit increase	Illumina [at least 560000] (imputed)	N
761	chr20	23168525	23168526	rs117390891	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20p11.21	NR	rs117390891-?	NR	1E-7		0.0763	[0.048-0.105] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
761	chr20	23173465	23173466	rs73089756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs73089756-C	NR	4E-20		0.08	[0.063-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
761	chr20	23181353	23181354	rs6083035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6083035-C	NR	1E-18		0.0273	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
761	chr20	23182558	23182559	rs6083037	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	20p11.21	CD93	rs6083037-A	0.8253	7E-12		1.0896974	[1.06-1.12]	Affymetrix [up to 34000000] (imputed)	N
761	chr20	23185322	23185323	rs11698127	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs11698127-A	NR	3E-17		0.0229	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
762	chr20	23231189	23231190	rs6048644	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	20p11.21		rs6048644-?	NR	5E-6		0.3516215	[0.2-0.5] unit increase	Illumina [9842460] (imputed)	N
762	chr20	23233428	23233429	rs2424519	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2424519-T	NR	1E-56		0.0442	[0.039-0.05] unit increase	Affymetrix [9000000] (imputed)	N
762	chr20	23233547	23233548	rs6114020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6114020-C	NR	2E-30		0.0464	[0.039-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
762	chr20	23235963	23235964	rs192455477	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs192455477-A	NR	4E-162		0.2363	[0.22-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
762	chr20	23268636	23268637	rs4815191	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20p11.21	NXT1	rs4815191-A	0.202	6E-6	(Free T3 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
762	chr20	23296208	23296209	rs6048704	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6048704-T	NR	5E-222		0.0876	[0.082-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
762	chr20	23310587	23310588	rs2995729	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2995729-G	NR	5E-72		0.065	[0.058-0.072] unit increase	Affymetrix [9000000] (imputed)	N
762	chr20	23318462	23318463	rs6076052	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	20p11.21		rs6076052-?	NR	3E-6		0.474173	[0.28-0.67] unit decrease	Illumina [9901720] (imputed)	N
763	chr20	23368410	23368411	rs6076065	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	20p11.21	NR	rs6076065-A	0.398	3E-6		0.1417	[0.082-0.201] unit decrease	Illumina [10677593] (imputed)	N
763	chr20	23375906	23375907	rs2424533	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	20p11.21	NR	rs2424533-T	0.3975	3E-6		0.1435	[0.084-0.203] unit decrease	Illumina [10677593] (imputed)	N
763	chr20	23377599	23377600	rs3736756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs3736756-A	NR	7E-11		0.0381	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
763	chr20	23377814	23377815	rs17750862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs17750862-A	NR	2E-123		0.1242	[0.11-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr20	23388087	23388087	rs11480078	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	20p11.21		rs11480078-?	NR	2E-6		0.4561216	[0.27-0.64] unit increase	Illumina [9906551] (imputed)	N
763	chr20	23395997	23395998	rs6083120	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	20p11.21	NAPB	rs6083120-T	0.15	4E-7		0.027	[0.017-0.037] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
763	chr20	23405903	23405904	rs78916169	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs78916169-T	NR	8E-200		0.1572	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
763	chr20	23418326	23418327	rs117492213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117492213-A	NR	7E-167		0.3246	[0.3-0.35] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr20	23423096	23423097	rs6083125	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6083125-C	NR	4E-26		0.071	[0.058-0.084] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr20	23457644	23457645	rs6048824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6048824-A	NR	8E-10		0.0308	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23470410	23470411	rs117058259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117058259-A	NR	4E-19		0.0967	[0.076-0.118] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23471680	23471681	rs2073300	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	20p11.21	NR	rs2073300-?	NR	4E-7	(AA)	12.35	[10.45-14.25]	Illumina [905956]	N
764	chr20	23472390	23472391	rs2983288	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2983288-G	NR	7E-21		0.065	[0.051-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr20	23486217	23486218	rs3004116	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	20p11.21		rs3004116-?	NR	1E-6		0.17	[0.1-0.24] unit increase	Affymetrix, Illumina [NR] (imputed)	N
764	chr20	23488709	23488710	rs238670	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	20p11.21	NR	rs238670-?	NR	1E-6				Illumina [7500450] (imputed)	N
764	chr20	23491777	23491778	rs6076080	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6076080-T	NR	3E-11		0.0248	[0.018-0.032] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23494845	23494846	rs113118940	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	20p11.21	Intergenic	rs113118940-T	NR	1E-8	(between families)	5.733	unit increase	Affymetrix [up to 15107142] (imputed)	N
764	chr20	23495534	23495535	rs75663458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs75663458-A	NR	3E-10		0.046	[0.032-0.06] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23502128	23502129	rs369386096	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20p11.21	CSTT	rs369386096-C		4E-8		9.788	unit decrease	Affymetrix [at least 2696785] (imputed)	N
764	chr20	23517559	23517560	rs41304816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs41304816-C	NR	2E-482		0.1834	[0.18-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr20	23544378	23544379	rs75810394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs75810394-G	NR	3E-250		0.2652	[0.25-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr20	23546708	23546709	rs79890466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs79890466-T	NR	7E-14		0.0936	[0.069-0.118] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23546870	23546871	rs2208284	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2208284-C	NR	2E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr20	23569688	23569689	rs12710327	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	RP11-218C14.2	rs12710327-T	0.223	1E-109	(Transmembrane emp24 domain-containing protein 10, TMED10.6506.54.3)	0.61	[0.55-0.67] unit decrease	Affymetrix [10572788] (imputed)	N
764	chr20	23578188	23578189	rs1158167	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Cystatin C levels	981 individuals	NA	20p11.21	CST9, CST3, CST9L	rs1158167-?	NR	9E-9				Affymetrix [70897]	N
764	chr20	23586976	23586977	rs2983641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2983641-C	NR	2E-379		0.1303	[0.12-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
764	chr20	23588002	23588003	rs6036465	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMED10	5,364 Icelandic ancestry individuals	NA	20p11.21		rs6036465-T	0.2213	3E-124		0.48289	[0.44-0.52] unit decrease	Illumina [7506463] (imputed)	N
764	chr20	23588707	23588708	rs62208863	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs62208863-T	NR	1E-21		0.0636	[0.05-0.077] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23591418	23591419	rs6106688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6106688-G	NR	1E-9		0.0618	[0.042-0.082] unit increase	Affymetrix [9000000] (imputed)	N
764	chr20	23592834	23592835	rs76916242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs76916242-A	NR	2E-45		0.1193	[0.1-0.14] unit increase	Affymetrix [9000000] (imputed)	N
765	chr20	23599815	23599815	rs144247761	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs144247761-CTT	0.577	6E-78	(Transmembrane emp24 domain-containing protein 10, TMED10.6506.54.3)	0.46	[0.42-0.5] unit increase	Affymetrix [10572788] (imputed)	N
765	chr20	23609919	23609920	rs60852953	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs60852953-T	NR	1E-9		0.1286	[0.087-0.17] unit increase	Affymetrix [9000000] (imputed)	N
765	chr20	23609952	23609953	rs6114205	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p11.21	NR	rs6114205-A	0.01742	5E-9	(ABAT)	1.737	NR unit increase	Illumina [1671387] (imputed)	N
765	chr20	23611358	23611359	rs6036478	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST3, RP11-218C14.2, CST9, RP11-218C14.8	rs6036478-A	0.2046371	1E-14	(EA, Cystatin-C)	0.3912	[0.29-0.49] unit decrease	Affymetrix [509946]	N
765	chr20	23612736	23612737	rs911119	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	20p11.21	CST9, CST3, CST4	rs911119-?	0.21	2E-138	(eGFRcys)			Affymetrix, Illumina [~ 2500000] (imputed)	N
765	chr20	23615951	23615971	rs765138253	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20p11.21		rs765138253-?	NR	3E-256		3.05977	[2.88-3.24] unit decrease	NR [9800000] (imputed)	N
765	chr20	23615957	23615958	rs1355608117	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20p11.21		rs1355608117-?	NR	5E-72		2.20539	[1.96-2.45] unit decrease	NR [9800000] (imputed)	N
765	chr20	23615970	23615971	rs1037935723	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20p11.21		rs1037935723-?	NR	6E-69		2.14755	[1.91-2.38] unit decrease	NR [9800000] (imputed)	N
765	chr20	23616004	23616005	rs376840807	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20p11.21		rs376840807-?	NR	5E-100		3.24466	[2.94-3.55] unit decrease	NR [9800000] (imputed)	N
765	chr20	23616468	23616469	rs35610040	24952865	Akerblom A	2014-04-04	Am Heart J	Polymorphism of the cystatin C gene in patients with acute coronary syndromes: Results from the PLATelet inhibition and patient Outcomes study.	Plasma cystastin c levels in acute coronary syndrome	9,801 European ancestry cases, 57 Black cases, 90 Oriental ancestry cases, 30 cases	NA	20p11.21	CST3	rs35610040-G	0.205443	1E-26		0.0562	[NR] mg/L decrease	Illumina [619657]	N
765	chr20	23618651	23618652	rs71334202	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	NR	rs71334202-A	0.7878125	8E-65	(TMED10, 6506_54_3)	0.47329345	[0.42-0.53] unit increase	Illumina [> 1000000] (imputed)	N
765	chr20	23618651	23618652	rs71334202	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	NR	rs71334202-A	0.7878125	3E-13	(CST5, 3803_10_2)	0.21586226	[0.16-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
765	chr20	23618651	23618652	rs71334202	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	NR	rs71334202-A	0.7878125	1E-26	(CST3, 2609_59_2)	0.30392942	[0.25-0.36] unit increase	Illumina [> 1000000] (imputed)	N
765	chr20	23622757	23622758	rs2254635	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST3	5,351 Icelandic ancestry individuals	NA	20p11.21		rs2254635-T	0.2079	1E-51		0.300817	[0.26-0.34] unit decrease	Illumina [7506463] (imputed)	N
765	chr20	23622879	23622880	rs2405367	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20p11.21	NR	rs2405367-A	0.198	8E-6	(IFNgamma_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
765	chr20	23633754	23633755	rs13039144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs13039144-G	NR	8E-3580		0.3915	[0.39-0.4] unit decrease	Affymetrix [9000000] (imputed)	N
765	chr20	23636979	23636980	rs2424590	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	NR	rs2424590-?	NR	4E-13	(EA, Cystatin-C)			Affymetrix [509946]	N
765	chr20	23642388	23642389	rs13040731	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs13040731-C	NR	3E-202		0.1103	[0.1-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
765	chr20	23642426	23642427	rs16985615	24952865	Akerblom A	2014-04-04	Am Heart J	Polymorphism of the cystatin C gene in patients with acute coronary syndromes: Results from the PLATelet inhibition and patient Outcomes study.	Plasma cystastin c levels in acute coronary syndrome	9,801 European ancestry cases, 57 Black cases, 90 Oriental ancestry cases, 30 cases	NA	20p11.21	CST3, CST4	rs16985615-?	NR	4E-7	(Conditioned on rs6048952)			Illumina [619657]	N
765	chr20	23671987	23671988	rs117877399	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117877399-A	NR	2E-502		0.4138	[0.4-0.43] unit decrease	Affymetrix [9000000] (imputed)	N
765	chr20	23677828	23677829	rs6049003	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	20p11.21	NR	rs6049003-?	NR	1E-18	(Cystatin-SA)			Illumina [514227]	N
765	chr20	23681072	23681073	rs7270028	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST4	rs7270028-C	0.89640625	2E-31	(CST4, 14076_74_3)	0.46541107	[0.39-0.54] unit increase	Illumina [> 1000000] (imputed)	N
765	chr20	23690020	23690021	rs7263120	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST4, CST1, CST2P1	rs7263120-T	0.1110553	2E-16	(EA, Cystatin-SA)	0.5621	[0.43-0.69] unit decrease	Affymetrix [509946]	N
765	chr20	23690020	23690021	rs7263120	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST4, CST1, CST2P1	rs7263120-T	0.1110553	1E-12	(EA, Cystatin-SN)	0.4936	[0.36-0.63] unit decrease	Affymetrix [509946]	N
765	chr20	23690466	23690467	rs7263473	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST4	5,368 Icelandic ancestry individuals	NA	20p11.21		rs7263473-A	0.1017	9E-62		0.510188	[0.45-0.57] unit decrease	Illumina [7506463] (imputed)	N
765	chr20	23708951	23708952	rs117668737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117668737-A	NR	4E-14		0.0521	[0.039-0.066] unit increase	Affymetrix [9000000] (imputed)	N
765	chr20	23709544	23709545	rs4328700	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	20p11.21	NR	rs4328700-?	NR	1E-20	(Cystatin-SN)			Illumina [514227]	N
765	chr20	23711881	23711882	rs6114248	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST1, CST2P1	rs6114248-A	0.3145729	5E-37	(Cystatin-SN)	0.564	[0.48-0.65] unit increase	Affymetrix [509946]	N
765	chr20	23711881	23711882	rs6114248	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST1, CST2P1	rs6114248-A	0.3145729	4E-31	(Cystatin-SA)	0.5148	[0.43-0.6] unit increase	Affymetrix [509946]	N
765	chr20	23720853	23720854	rs140808476	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST1	5,364 Icelandic ancestry individuals	NA	20p11.21		rs140808476-A	0.01167	6E-11		0.562155	[0.39-0.73] unit decrease	Illumina [7506463] (imputed)	N
765	chr20	23721991	23721992	rs6036507	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	20p11.21	NR	rs6036507-?	NR	2E-13	(CYTN)	0.31	[0.23-0.39] unit increase	Illumina [4020654] (imputed)	N
765	chr20	23721991	23721992	rs6036507	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	20p11.21	NR	rs6036507-?	NR	1E-11	(CYTT)	0.3	[0.21-0.39] unit increase	Illumina [4020654] (imputed)	N
765	chr20	23723591	23723592	rs116548544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs116548544-A	NR	8E-133		0.1519	[0.14-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr20	23727827	23727828	rs6049067	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST2	5,366 Icelandic ancestry individuals	NA	20p11.21		rs6049067-G	0.4816	3E-9		0.108873	[0.073-0.145] unit decrease	Illumina [7506463] (imputed)	N
766	chr20	23730335	23730336	rs4260306	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST2	5,366 Icelandic ancestry individuals	NA	20p11.21		rs4260306-T	0.2676	1E-145		0.500084	[0.46-0.54] unit decrease	Illumina [7506463] (imputed)	N
766	chr20	23730335	23730336	rs4260306	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST1	5,364 Icelandic ancestry individuals	NA	20p11.21		rs4260306-T	0.2676	4E-221		0.605281	[0.57-0.64] unit decrease	Illumina [7506463] (imputed)	N
766	chr20	23730335	23730336	rs4260306	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST2	rs4260306-C	0.738125	1E-78	(CST2, 4324_33_2)	0.48779237	[0.44-0.54] unit increase	Illumina [> 1000000] (imputed)	N
766	chr20	23730335	23730336	rs4260306	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST1	rs4260306-C	0.738125	1E-115	(CST1, 5459_33_3)	0.59128964	[0.54-0.64] unit increase	Illumina [> 1000000] (imputed)	N
766	chr20	23731384	23731385	rs77188058	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs77188058-C	NR	3E-10		0.1591	[0.11-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr20	23731411	23731412	rs2070856	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST1	rs2070856-A	0.1303912	6E-19	(EA, Cystatin-SN)	0.5549	[0.44-0.67] unit decrease	Affymetrix [509946]	N
766	chr20	23731493	23731494	rs6076122	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6076122-G	NR	1E-51		0.0397	[0.035-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr20	23731652	23731653	rs13045804	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST1	5,364 Icelandic ancestry individuals	NA	20p11.21		rs13045804-C	0.3778	4E-87		0.364105	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
766	chr20	23743039	23743040	rs147525344	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	20p11.21	Intergenic	rs147525344-T	NR	5E-9	(between families)	5.856	unit decrease	Affymetrix [up to 15107142] (imputed)	N
766	chr20	23750403	23750404	rs13043045	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs13043045-T	NR	2E-307		0.1598	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
766	chr20	23801746	23801747	rs6076132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6076132-C	NR	7E-24		0.0726	[0.058-0.087] unit increase	Affymetrix [9000000] (imputed)	N
766	chr20	23801949	23801950	rs6106728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6106728-T	NR	1E-349		0.1165	[0.11-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr20	23804661	23804662	rs139220979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs139220979-T	NR	3E-10		0.14	[0.096-0.184] unit increase	Affymetrix [9000000] (imputed)	N
766	chr20	23813617	23813618	rs8184710	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs8184710-A	NR	4E-115		0.0699	[0.064-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr20	23832594	23832595	rs11698834	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in cancer or chronic obstructive pulmonary disease	1,085 cancer cases, 237 COPD cases	NA	20p11.21	CST5	rs11698834-?		9E-6		0.034	[0.018-0.050] unit decrease	Affymetrix [418365]	N
766	chr20	23833853	23833854	rs4387871	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	20p11.21	NR	rs4387871-?	NR	3E-19	(CYTD)			Illumina [~ 4000000] (imputed)	N
766	chr20	23847008	23847009	rs6138150	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	20p11.21	CST5	rs6138150-T	0.84	3E-6				Illumina [283348]	N
766	chr20	23847253	23847254	rs4585101	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST2	rs4585101-T	0.221665	6E-12	(EA, Cystatin-D)	0.3565	[0.26-0.46] unit decrease	Affymetrix [509946]	N
766	chr20	23850129	23850130	rs6138152	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST5, CST2	rs6138152-G	0.1955868	2E-42	(Cystatin-D)	0.7176	[0.62-0.82] unit increase	Affymetrix [509946]	N
767	chr20	23858333	23858334	rs2071444	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST5	rs2071444-G	0.799375	7E-186	(CST5, 3803_10_2)	0.8243841	[0.77-0.88] unit decrease	Illumina [> 1000000] (imputed)	N
767	chr20	23858753	23858754	rs4815243	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST5	5,367 Icelandic ancestry individuals	NA	20p11.21		rs4815243-G	0.2207	8E-14		0.166382	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
767	chr20	23858983	23858984	rs4815244	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	20p11.21	CST5	rs4815244-T	0.44	6E-6		1.26		Illumina [8974355] (imputed)	N
767	chr20	23867668	23867669	rs117552590	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117552590-G	NR	1E-20		0.0962	[0.076-0.116] unit increase	Affymetrix [9000000] (imputed)	N
767	chr20	23869746	23869747	rs78187307	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs78187307-A	NR	4E-27		0.059	[0.048-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr20	23898994	23898995	rs1741629	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20p11.21	NR	rs1741629-?	NR	2E-7		0.389	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
767	chr20	23916653	23916654	rs116845677	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs116845677-C	NR	3E-51		0.0791	[0.069-0.089] unit increase	Affymetrix [9000000] (imputed)	N
767	chr20	23917135	23917136	rs118005442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs118005442-T	NR	4E-38		0.0654	[0.055-0.075] unit increase	Affymetrix [9000000] (imputed)	N
767	chr20	23953104	23953105	rs2984254	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs2984254-T	NR	4E-99		0.1048	[0.095-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr20	23980269	23980270	rs56369379	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs56369379-T	NR	3E-14		0.0524	[0.039-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
768	chr20	24004753	24004754	rs79569524	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs79569524-A	NR	5E-12		0.0579	[0.041-0.074] unit increase	Affymetrix [9000000] (imputed)	N
768	chr20	24010220	24010221	rs78269607	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs78269607-T	NR	4E-24		0.1341	[0.11-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
768	chr20	24039954	24039955	rs77581079	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs77581079-G	NR	3E-28		0.0872	[0.072-0.103] unit increase	Affymetrix [9000000] (imputed)	N
768	chr20	24042906	24042907	rs1797024	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs1797024-A	NR	2E-12		0.0402	[0.029-0.051] unit increase	Affymetrix [9000000] (imputed)	N
768	chr20	24047153	24047154	rs6114452	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6114452-C	NR	1E-19		0.0516	[0.04-0.063] unit increase	Affymetrix [9000000] (imputed)	N
768	chr20	24051649	24051650	rs11905612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs11905612-A	NR	3E-11		0.0262	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
768	chr20	24058406	24058407	rs6049375	20932654	Kerns SL	2010-10-05	Int J Radiat Oncol Biol Phys	Genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.	Erectile dysfunction and prostate cancer treatment	27 African American cases, 52 African American controls	NA	20p11.21	GGTLC1	rs6049375-?	0.28	8E-6		4.84	[NR]	Affymetrix [512497]	N
768	chr20	24082577	24082578	rs6076187	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	20p11.21	FLJ33581	rs6076187-A	0.04	9E-6		2.27	[1.58-3.26]	Illumina [7033776] (imputed)	N
768	chr20	24094269	24094270	rs79068386	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs79068386-A	NR	5E-18		0.0414	[0.032-0.051] unit increase	Affymetrix [9000000] (imputed)	N
769	chr20	24126760	24126761	rs78260152	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	20p11.21	FLJ33581	rs78260152-T	0.07	2E-7		0.34	[0.21-0.47] mg/dl increase	Illumina [9281895] (imputed)	N
769	chr20	24163601	24163602	rs11697697	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	866 European and unknown ancestry individuals	NA	20p11.21	NR	rs11697697-?	NR	2E-6		0.09	[0.05-0.12] unit increase	Illumina [> 2600000] (imputed)	N
769	chr20	24163601	24163602	rs11697697	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromosome type)	607 European and unknown ancestry genotoxic compound-exposed individuals, 866 European and unknown ancestry unexposed individuals	NA	20p11.21	NR	rs11697697-?	NR	7E-7		0.08	[NR] unit increase	Illumina [> 2600000] (imputed)	N
769	chr20	24219383	24219384	rs7508797	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	20p11.21	LINC01721	rs7508797-?	NR	3E-7	(African)	0.0083	[0.0073-0.0093] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
769	chr20	24227672	24227673	rs858059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs858059-A	NR	4E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
770	chr20	24252989	24252990	rs138299341	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	20p11.21	NR	rs138299341-A	NR	2E-6	(LME model)	1.2753	[0.75-1.81] unit increase	NR [NR] (imputed)	N
770	chr20	24254454	24254455	rs60137715	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs60137715-C	NR	4E-13		0.0412	[0.03-0.052] unit increase	Affymetrix [9000000] (imputed)	N
770	chr20	24311176	24311177	rs76087671	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour in bipolar disorder	398 European ancestry bipolar disorder cases, 1,231 European ancestry bipolar disorder controls	NA	20p11.21	intergenic	rs76087671-T	0.05	1E-6		2.3255813	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
770	chr20	24312768	24312769	rs80077319	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	20p11.21	NR	rs80077319-A		4E-7		0.3647	[0.22-0.51] unit increase	Illumina [12770451] (imputed)	N
770	chr20	24313472	24313473	rs6106856	33218114	Rebelo MA	2020-11-18	Brain Sci	Genome-Wide Scan for Five Brain Oscillatory Phenotypes Identifies a New QTL Associated with Theta EEG Band.	Beta 2 electroencephalogram power	191 European ancestry individuals	NA	20p11.21	NR	rs6106856-?	NR	2E-6		0.03	NR unit increase	Affymetrix [388620]	N
770	chr20	24332483	24332484	rs17249970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs17249970-C	NR	3E-9		0.0427	[0.029-0.057] unit increase	Affymetrix [9000000] (imputed)	N
770	chr20	24368008	24368009	rs78845105	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs78845105-C	NR	1E-51		0.1073	[0.093-0.121] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr20	24401721	24401722	rs79303366	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs79303366-A	NR	1E-16		0.0341	[0.026-0.042] unit increase	Affymetrix [9000000] (imputed)	N
771	chr20	24427179	24427180	rs6114731	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	20p11.21	NR	rs6114731-A	0.03	5E-6		1.78	1.39-2.27	NR [8814543] (imputed)	N
771	chr20	24428579	24428580	rs73099567	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs73099567-A	NR	3E-9		0.0375	[0.025-0.05] unit increase	Affymetrix [9000000] (imputed)	N
771	chr20	24431833	24431834	rs2050203	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	20p11.21	intergenic	rs2050203-?	NR	4E-6		1.78		Illumina [636555]	N
771	chr20	24433070	24433071	rs6036804	34834492	Espuela-Ortiz A	2021-11-03	J Pers Med	Role of Sex on the Genetic Susceptibility to Childhood Asthma in Latinos and African Americans.	Childhood asthma x sex interaction	3,371 African ancestry, European ancestry, Native American ancestry cases, 2,650 African ancestry, European ancestry, Native American ancestry controls	NA	NA		rs6036804-C	NR	8E-7		0.63	[0.39-1.01]	Affymetrix [6680224] (imputed)	N
771	chr20	24505893	24505894	rs117828697	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117828697-C	NR	2E-37		0.0976	[0.083-0.112] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr20	24536141	24536142	rs184605088	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	20p11.21	NR	rs184605088-A	0.02	4E-6		4.64	[NR] z score decrease	Illumina [9009554] (imputed)	N
772	chr20	24564645	24564646	rs62215296	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Sucrose liking	686 European ancestry twins	NA	20p11.21	SYNDIG1	rs62215296-G	0.74	7E-6		0.49	[0.27-0.71] unit increase	Illumina [5833901] (imputed)	N
772	chr20	24630359	24630360	rs4815295	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs4815295-T	NR	2E-16		0.0209	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
773	chr20	24646684	24646685	rs73100765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs73100765-G	NR	5E-10		0.0347	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
773	chr20	24656926	24656927	rs761440	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	20p11.21	RP5-860P4.2	rs761440-A	0.016	2E-6		3.92	[2.23-6.90]	Illumina [3905175] (imputed)	N
773	chr20	24717084	24717085	rs2424635	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20p11.21	NR	rs2424635-?	NR	7E-6		1.2261	[NR]	Affymetrix [722112]	N
773	chr20	24720025	24720026	rs2424645	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	20p11.21	CST7	rs2424645-A	0.6535	5E-8		0.012785072	[0.0082-0.0174] unit increase	Affymetrix [11514936] (imputed)	N
774	chr20	24835417	24835418	rs2150649	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	APMAP	rs2150649-C	0.929375	2E-19	(APMAP, 10605_22_3)	0.4299296	[0.34-0.52] unit increase	Illumina [> 1000000] (imputed)	N
774	chr20	24873552	24873553	rs6050091	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	Intergenic	rs6050091-A	0.02056169	7E-12	(EA, Cystatin-F)	1.072	[0.77-1.38] unit increase	Affymetrix [509946]	N
774	chr20	24894022	24894023	rs6050123	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.21	NR	rs6050123-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
774	chr20	24897959	24897960	rs6050127	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs6050127-C	0.382	1E-24	(Cystatin-F, CST7.3302.58.1)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
774	chr20	24899058	24899059	rs4462847	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,368 Icelandic ancestry individuals	NA	20p11.21		rs4462847-G	0.45	4E-49		0.282038	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
775	chr20	24906986	24906987	rs372476640	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs372476640-C	0.153	1E-123	(Cystatin-F, CST7.3302.58.1)	0.81	[0.75-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
775	chr20	24909471	24909472	rs227618	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST7	rs227618-T	0.7625	5E-302	(CST7, 14038_130_3)	0.96833223	[0.92-1.01] unit increase	Illumina [> 1000000] (imputed)	N
775	chr20	24909576	24909577	rs227619	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APMAP	5,353 Icelandic ancestry individuals	NA	20p11.21		rs227619-A	0.1199	8E-32		0.315564	[0.26-0.37] unit increase	Illumina [7506463] (imputed)	N
775	chr20	24911330	24911331	rs59765118	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	CST7	rs59765118-T	0.234	8E-190	(Cystatin-F, CST7.3302.58.1)	0.76	[0.7-0.82] unit decrease	Affymetrix [10572788] (imputed)	N
775	chr20	24922883	24922884	rs6050182	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20p11.21	NR	rs6050182-?	NR	1E-6				Affymetrix [NR]	N
775	chr20	24924072	24924073	rs227646	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	CST7	rs227646-A	0.131	3E-13	(Tyrosine-protein phosphatase non-receptor type 4, PTPN4.14254.27.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
775	chr20	24924643	24924644	rs2256027	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20p11.21	NR	rs2256027-A	0.02868	2E-9		0.0375596	[0.025-0.05] unit decrease	NR [NR]	N
775	chr20	24929695	24929696	rs73112274	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,368 Icelandic ancestry individuals	NA	20p11.21		rs73112274-A	0.06047	5E-44		0.554356	[0.48-0.63] unit decrease	Illumina [7506463] (imputed)	N
775	chr20	24929695	24929696	rs73112274	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs73112274-A	0.061	3E-15	(Adipocyte plasma membrane-associated protein, APMAP.10605.22.3)	0.41	[0.31-0.51] unit decrease	Affymetrix [10572788] (imputed)	N
775	chr20	24929695	24929696	rs73112274	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs73112274-A	0.061	1E-14	(Cystatin-F, CST7.3302.58.1)	0.4	[0.3-0.5] unit decrease	Affymetrix [10572788] (imputed)	N
775	chr20	24929833	24929834	rs227651	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,366 Icelandic ancestry individuals	NA	20p11.21		rs227651-G	0.2389	6E-30		0.248241	[0.21-0.29] unit decrease	Illumina [7506463] (imputed)	N
775	chr20	24930530	24930531	rs76897221	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs76897221-A	0.027	6E-67	(Cystatin-F, CST7.3302.58.1)	1.31	[1.15-1.47] unit increase	Affymetrix [10572788] (imputed)	N
775	chr20	24964557	24964558	rs12242	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APMAP	5,353 Icelandic ancestry individuals	NA	20p11.21		rs12242-C	0.06586	3E-32		0.417851	[0.35-0.49] unit decrease	Illumina [7506463] (imputed)	N
775	chr20	24967214	24967215	rs113136783	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,368 Icelandic ancestry individuals	NA	20p11.21		rs113136783-C	0.01246	3E-171		2.23495	[2.08-2.39] unit increase	Illumina [7506463] (imputed)	N
775	chr20	24967214	24967215	rs113136783	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CST7	5,366 Icelandic ancestry individuals	NA	20p11.21		rs113136783-C	0.01246	4E-47		1.18766	[1.03-1.35] unit increase	Illumina [7506463] (imputed)	N
775	chr20	24973570	24973571	rs185515630	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	NR	rs185515630-C	0.011	9E-62	(Cystatin-F, CST7.3302.58.1)	1.99	[1.75-2.23] unit increase	Affymetrix [10572788] (imputed)	N
775	chr20	24973768	24973769	rs6138458	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20p11.21	CST7, APMAP, RP4-568C11.4, RNU6-1257P	rs6138458-A	0.2271815	8E-53	(Cystatin-F)	0.7626	[0.67-0.85] unit decrease	Affymetrix [509946]	N
775	chr20	24975834	24975835	rs8125909	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	APMAP	rs8125909-C	0.132	3E-16	(Adipocyte plasma membrane-associated protein, APMAP.10605.22.3)	0.3	[0.22-0.38] unit increase	Affymetrix [10572788] (imputed)	N
775	chr20	24975834	24975835	rs8125909	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20p11.21	APMAP	rs8125909-C	0.132	3E-13	(Tyrosine-protein phosphatase non-receptor type 4, PTPN4.14254.27.3)	0.27	[0.19-0.35] unit increase	Affymetrix [10572788] (imputed)	N
775	chr20	24979868	24979869	rs6037004	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs6037004-G	NR	3E-16		0.0563	[0.043-0.07] unit increase	Affymetrix [9000000] (imputed)	N
775	chr20	24981053	24981054	rs2387573	27476799	Nielson CM	2016-09-06	J Bone Miner Res	Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.	Lumbar spine bone mineral density (integral)	11,080 European ancestry individuals	NA	20p11.21	ACSS1	rs2387573-A	0.11	4E-6		0.092	[0.053-0.131] unit decrease	Affymetrix, Illumina [up to 2659730] (imputed)	N
775	chr20	24986294	24986295	rs6138465	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	20p11.21		rs6138465-T	0.819397	6E-41		0.0723777	[0.062-0.083] unit increase	NR [11722792] (imputed)	N
775	chr20	25005087	25005088	rs77671253	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20p11.21	CST7	rs77671253-G	0.9865625	8E-28	(CST7, 3302_58_1)	1.1366082	[0.93-1.34] unit decrease	Illumina [> 1000000] (imputed)	N
775	chr20	25019098	25019099	rs6050267	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	20p11.21	ACSS1	rs6050267-?	NR	9E-6	(Colorword)			Illumina [up to 563855]	N
775	chr20	25027525	25027526	rs6083730	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.21	NR	rs6083730-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
776	chr20	25035710	25035711	rs4815364	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	20p11.21	ACSS1	rs4815364-A	0.608	1E-7		0.0055	[0.0035-0.0075] unit increase	Affymetrix [~ 7740000] (imputed)	N
776	chr20	25035710	25035711	rs4815364	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	20p11.21	VSX1	rs4815364-A	0.6062	5E-9		0.013353928	[0.0089-0.0178] unit increase	Affymetrix [11514936] (imputed)	N
776	chr20	25035710	25035711	rs4815364	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	20p11.21	NR	rs4815364-A	0.616	2E-10		0.0086305	[0.006-0.0113] unit increase	NR [~ 9732723] (imputed)	N
776	chr20	25035710	25035711	rs4815364	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	20p11.21	NR	rs4815364-A	0.616	1E-8		0.008582356	[0.0056-0.0115] unit increase	NR [~ 10000000] (imputed)	N
776	chr20	25048442	25048452	rs149591338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p11.21		rs149591338-G	NR	3E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
776	chr20	25048442	25048452	rs149591338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20p11.21		rs149591338-G	NR	1E-8		0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
776	chr20	25054082	25054083	rs62217197	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	20p11.21	VSX1	rs62217197-A	0.8028	3E-7		0.0077	[0.0044-0.011] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
776	chr20	25062714	25062715	rs8123716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs8123716-A	NR	1E-12		0.0289	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
776	chr20	25064311	25064312	rs6115024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20p11.21		rs6115024-?	NR	9E-12				NR [~ 8900000] (imputed)	N
776	chr20	25070297	25070298	rs6083743	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	20p11.21	NR	rs6083743-?	NR	3E-8	(Clostridium_amygdalinum)	3.47095	[3.03-3.91]	Illumina [5293637] (imputed)	N
776	chr20	25085079	25085080	rs12625281	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	20p11.21		rs12625281-A	NR	4E-6		1.0716	[1.04-1.1]	Illumina [11600722] (imputed)	N
776	chr20	25094305	25094306	rs6050333	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	20p11.21		rs6050333-?	NR	1E-8				NR [~ 8900000] (imputed)	N
776	chr20	25118270	25118271	rs6050351	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20p11.21	VSX1	rs6050351-?		5E-8				Affymetrix, Illumina [NR] (imputed)	N
777	chr20	25177986	25177987	rs6050424	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs6050424-G	NR	9E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr20	25181073	25181074	rs6050427	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.21	NR	rs6050427-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
777	chr20	25184465	25184466	rs6138537	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20p11.21	NR	rs6138537-A	0.494819	5E-13		0.0151789	[0.011-0.019] unit decrease	NR [NR]	N
777	chr20	25186501	25186502	rs3787075	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	20p11.21	NR	rs3787075-G	0.3356	1E-11		0.017758133	[0.013-0.023] unit increase	Affymetrix [10549349] (imputed)	N
777	chr20	25187212	25187213	rs2076559	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	20p11.21	ENTPD6	rs2076559-A	0.3279	2E-16		0.0155	[0.012-0.019] unit increase	Illumina [246328]	N
777	chr20	25190035	25190036	rs55927253	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.21	NR	rs55927253-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
777	chr20	25190776	25190777	rs4456769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p11.21		rs4456769-?	NR	3E-13				NR [~ 8900000] (imputed)	N
777	chr20	25192048	25192049	rs8122855	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20p11.21	NA	rs8122855-A	0.3377	4E-14		0.0137	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
777	chr20	25194610	25194611	rs76171326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20p11.21		rs76171326-?	NR	2E-14				NR [~ 8900000] (imputed)	N
777	chr20	25195508	25195509	rs6050446	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p11.21	ENTPD6	rs6050446-A	0.0325877	1E-11		0.0264171	[0.019-0.034] unit decrease	Affymetrix [12370749]	N
777	chr20	25195508	25195509	rs6050446	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20p11.21	NR	rs6050446-G	0.971	1E-19		0.0301084	[0.024-0.037] unit increase	NR [9732723] (imputed)	N
777	chr20	25195508	25195509	rs6050446	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20p11.21	NR	rs6050446-G	0.971	9E-13		0.054409795	[0.039-0.069] unit increase	NR [~ 10000000] (imputed)	N
777	chr20	25195508	25195509	rs6050446	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20p11.21	NR	rs6050446-A	NR	3E-6		0.036	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
777	chr20	25195508	25195509	rs6050446	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	20p11.21	ENTPD6	rs6050446-A	0.0271	2E-10		0.034	[0.024-0.044] unit decrease	Illumina [246328]	N
777	chr20	25202891	25202892	rs6037062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20p11.21		rs6037062-?	NR	5E-12				NR [~ 8900000] (imputed)	N
777	chr20	25206653	25206654	rs1044573	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20p11.21	NR	rs1044573-A	0.506977	4E-13		0.0139532	[0.01-0.018] unit decrease	Affymetrix [15000001]	N
777	chr20	25206653	25206654	rs1044573	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	Allergic rhinitis	3,933 European ancestry cases, 8,965 European ancestry controls	NA	20p11.21	ENTPD6	rs1044573-A	0.51	1E-6		1.15	[1.09-1.21]	Affymetrix, Illumina [2217510] (imputed)	N
777	chr20	25208989	25208990	rs6050463	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20p11.21	AL035252.1	rs6050463-G	0.507026	2E-9		0.0125353	[0.0084-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
777	chr20	25208989	25208990	rs6050463	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20p11.21	ABHD12	rs6050463-?	NR	6E-9		0.0149	[0.01-0.019] unit increase	Affymetrix [5701386] (imputed)	N
777	chr20	25209298	25209299	rs6050464	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20p11.21	AL035252.1	rs6050464-C	0.510523	6E-14		0.0156065	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
777	chr20	25209298	25209299	rs6050464	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20p11.21	NR	rs6050464-?	NR	5E-9	(left pallidum)			NR [9227495] (imputed)	N
777	chr20	25210826	25210827	rs6115094	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20p11.21	ENTPD6, AL035252.1, PYGB, ABHD12, GINS1, NINL, NANP	rs6115094-?		1E-8				NR [7428630] (imputed)	N
777	chr20	25225944	25225945	rs7344105	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	20p11.21	ENTPD6, PYGB	rs7344105-G	0.002	2E-6		15.21	[3.37-68.63]	Illumina [1556551]	N
777	chr20	25226898	25226899	rs74173671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs74173671-T	NR	6E-17		0.0499	[0.038-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr20	25229230	25229231	rs2273473	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20p11.21		rs2273473-G	0.46	1E-12		7.1	z score increase	Affymetrix [9061022] (imputed)	N
777	chr20	25229977	25229978	rs68007865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs68007865-A	NR	8E-16		0.0268	[0.02-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr20	25232603	25232604	rs3787080	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	20p11.21	PYGB	rs3787080-C	0.741	2E-10	(women)	0.051	[0.035-0.067] unit decrease	Affymetrix [~ 9000000] (imputed)	N
777	chr20	25237144	25237145	rs4813555	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20p11.21	PYGB	rs4813555-C	0.572383	6E-63		0.00429227	[0.0038-0.0048] unit increase	Affymetrix [13995440] (imputed)	N
777	chr20	25240188	25240189	rs2281558	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	20p11.21	NR	rs2281558-?	NR	4E-6	(AA)	4.64	[3.88-5.4]	Illumina [905956]	N
777	chr20	25240188	25240189	rs2281558	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	20p11.21	PYGB	rs2281558-T	0.25	5E-6		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
777	chr20	25241668	25241669	rs7274104	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20p11.21	NR	rs7274104-C	0.482	4E-8				NR [9056863] (imputed)	N
777	chr20	25256105	25256106	rs2424698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20p11.21		rs2424698-T	NR	5E-11		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
777	chr20	25256265	25256266	rs2260997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20p11.21	PYGB	rs2260997-T	0.44119	5E-17		0.018724998	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr20	25256265	25256266	rs2260997	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20p11.21	CTTNBP2	rs2260997-?		4E-9				NR [7428630] (imputed)	N
777	chr20	25257259	25257260	rs2257370	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20p11.21	NR	rs2257370-C	0.18	5E-11		0.0155	[0.011-0.02] unit increase	NR [NR]	N
777	chr20	25262768	25262769	rs2227891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs2227891-A	NR	2E-22		0.0305	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr20	25266899	25266900	rs139672965	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	20p11.21	intergenic	rs139672965-A	0.01	8E-6		0.654	[0.37-0.94] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
777	chr20	25268660	25268661	rs753009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20p11.21		rs753009-T	NR	4E-11		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
777	chr20	25272895	25272895	rs55769542	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	20p11.21	PYGB	rs55769542-C	0.674	3E-10		0.037	[0.025-0.049] unit decrease	Affymetrix [~ 9000000] (imputed)	N
777	chr20	25275620	25275621	rs73598373	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	20p11.21	PYGB	rs73598373-C	0.06	1E-6		0.222	[0.133-0.311] unit decrease	Affymetrix [7519176] (imputed)	N
777	chr20	25278962	25278963	rs2500430	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	20p11.21	ABHD12, PYGB	rs2500430-G	0.492	7E-10		0.03	[0.03-0.02] unit decrease	Illumina [NR] (imputed)	N
777	chr20	25282607	25282608	rs2236180	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	20p11.21	ABHD12	rs2236180-T	0.815	1E-6		0.0159	[0.0094-0.0224] unit increase	Affymetrix [19819130] (imputed)	N
777	chr20	25282607	25282608	rs2236180	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20p11.21	ABHD12	rs2236180-T	0.815	2E-6		0.0144	[0.0085-0.0203] unit increase	Affymetrix [19819130] (imputed)	N
777	chr20	25282607	25282608	rs2236180	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20p11.21	ABHD12	rs2236180-T	0.815	1E-7		0.016	[0.01-0.022] unit increase	Affymetrix [19819130] (imputed)	N
777	chr20	25282607	25282608	rs2236180	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20p11.21	ABHD12	rs2236180-T	0.815	1E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [19819130] (imputed)	N
777	chr20	25282966	25282967	rs746748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	20p11.21		rs746748-?	NR	1E-8				NR [~ 8900000] (imputed)	N
777	chr20	25294040	25294041	rs541907913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20p11.21	ABHD12	rs541907913-G	0.14469	3E-10		0.020288786	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
777	chr20	25294040	25294041	rs541907913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20p11.21	ABHD12	rs541907913-G	0.144705	2E-9		0.01924237	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr20	25296969	25296970	rs6083799	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20p11.21	ABHD12	rs6083799-T	0.56	1E-71		17.9	z-score increase	Affymetrix [4311822] (imputed)	N
778	chr20	25298086	25298087	rs7267979	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alkaline phosphatase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	20p11.21	ABHD12, GINS1, PYGB	rs7267979-G	0.57	7E-10		1.5	[0.90-2.0] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
778	chr20	25316943	25316944	rs11478147	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20p11.21		rs11478147-C	NR	5E-95		0.0486	[0.044-0.053] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
778	chr20	25333026	25333027	rs1962310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20p11.21	NR	rs1962310-T	0.25469	2E-12		0.014889	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
778	chr20	25333026	25333027	rs1962310	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20p11.21	NR	rs1962310-T	0.254721	1E-11		0.014312	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
778	chr20	25335662	25335663	rs73347016	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p11.21	NR	rs73347016-A	0.01045	7E-13	(COL18A1)	0.2072	NR unit decrease	Illumina [1671387] (imputed)	N
778	chr20	25363241	25363242	rs6076340	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs6076340-T	NR	4E-13		0.0304	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
778	chr20	25369416	25369417	rs67676850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20p11.21		rs67676850-C	NR	2E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
778	chr20	25369416	25369417	rs67676850	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20p11.21		rs67676850-C	NR	4E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
778	chr20	25373781	25373782	rs59934506	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	20p11.21		rs59934506-C	0.44	1E-13				NR [NR] (imputed)	N
778	chr20	25373781	25373782	rs59934506	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	20p11.21		rs59934506-C	0.44	4E-16		0.012	% increase	NR [NR] (imputed)	N
778	chr20	25373781	25373782	rs59934506	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	20p11.21		rs59934506-C	0.44	2E-10		0.012	U/L increase	NR [NR] (imputed)	N
778	chr20	25374222	25374223	rs73107469	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs73107469-T	NR	4E-11		0.0329	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr20	25387241	25387242	rs7270419	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p11.21	NR	rs7270419-A	0.01045	7E-13	(COL18A1)	0.2072	NR unit decrease	Illumina [1671387] (imputed)	N
778	chr20	25399979	25399979	rs11087515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20p11.21		rs11087515-GA	NR	1E-9		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
778	chr20	25399979	25399979	rs11087515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20p11.21	GINS1	rs11087515-GA	0.474343	4E-10		0.015213646	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
778	chr20	25400486	25400487	rs1888995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20p11.21		rs1888995-G	NR	2E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
778	chr20	25401861	25401862	rs2500406	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20p11.21	NR	rs2500406-?	NR	2E-8	(left pallidum)			NR [9227495] (imputed)	N
778	chr20	25421465	25421469	rs1421485023	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20p11.21	NR	rs1421485023-G	0.01045	1E-19	(PREP)	0.1355	NR unit increase	Illumina [1671387] (imputed)	N
779	chr20	25433535	25433536	rs2856	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	20p11.21	NR	rs2856-?		6E-7	(IL12B)			Illumina [NR]	N
779	chr20	25440369	25440370	rs67679582	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	20p11.21	GINS1	rs67679582-G	0.063	1E-6		0.231	[0.14-0.322] unit decrease	Affymetrix [7519176] (imputed)	N
779	chr20	25442996	25442997	rs559771	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	20p11.21		rs559771-C	NR	4E-6		0.87	[0.82-0.92]	Illumina [7105229] (imputed)	N
779	chr20	25454130	25454130	rs369224896	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	20p11.21	NINL	rs369224896-?	NR	5E-8		0.4007	[0.26-0.55] unit increase	Affymetrix [11100000] (imputed)	N
779	chr20	25463147	25463148	rs6138584	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20p11.21	NINL	rs6138584-A	0.2361	3E-9		0.0229	[0.015-0.03] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
779	chr20	25463147	25463148	rs6138584	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20p11.21	NINL	rs6138584-A	0.1803	2E-6		0.024111	[0.014-0.034] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
779	chr20	25527983	25527984	rs2210052	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20p11.21	NANP	rs2210052-?	NR	9E-6	(guanosine diphosphate)	0.18790679	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
779	chr20	25533872	25533873	rs73111240	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20p11.21		rs73111240-G	0.951	5E-10		0.017	[0.011-0.023] unit increase	NR [NR] (imputed)	N
779	chr20	25534853	25534854	rs116948922	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	20p11.21	NR	rs116948922-T	0.0284	2E-14		0.0350631	[0.026-0.044] unit increase	NR [9732723] (imputed)	N
779	chr20	25558790	25558791	rs8126111	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	20p11.21	NINL	rs8126111-C	0.065	2E-6		0.224	[0.133-0.315] unit decrease	Affymetrix [7519176] (imputed)	N
780	chr20	25565514	25565515	rs117495226	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs117495226-C	NR	9E-19		0.0604	[0.047-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr20	25590743	25590744	rs242132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20p11.21		rs242132-G	NR	1E-9		0.0398	[0.027-0.053] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
780	chr20	25590743	25590744	rs242132	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.21	NR	rs242132-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
780	chr20	25590743	25590744	rs242132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20p11.21		rs242132-?	NR	2E-19				NR [~ 8900000] (imputed)	N
780	chr20	25601459	25601460	rs6132853	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	20p11.21		rs6132853-T	NR	6E-6		0.85	[0.79-0.91]	Illumina [7105229] (imputed)	N
780	chr20	25640731	25640732	rs6115241	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	20p11.21	NR	rs6115241-G	NR	1E-9		0.0173	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
780	chr20	25647024	25647025	rs80105553	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	20p11.21	ZNF337-AS1	rs80105553-G	0.066	9E-7		0.231	[0.14-0.322] unit decrease	Affymetrix [7519176] (imputed)	N
780	chr20	25669051	25669052	rs6138639	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20p11.21		rs6138639-?	NR	3E-7		16.7	[10.31-23.09] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
780	chr20	25669051	25669052	rs6138639	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20p11.21	ZNF337	rs6138639-C	0.82	2E-7	(EA)	19.38	[12.03-26.73] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
780	chr20	25669051	25669052	rs6138639	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20p11.21	ZNF337	rs6138639-C	0.79	3E-10		17.91	[12.32-23.5] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
780	chr20	25672340	25672341	rs6050790	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.21	NR	rs6050790-G	NR	3E-15		0.0224	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
780	chr20	25675317	25675318	rs74853405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.21	NR	rs74853405-A	NR	2E-12		0.0696	[0.05-0.089] unit increase	Affymetrix [9000000] (imputed)	N
780	chr20	25680613	25680614	rs34662679	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20p11.21		rs34662679-G	NR	4E-8		0.0147	[0.0094-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
781	chr20	25704131	25704132	rs75561923	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.1	NR	rs75561923-A	NR	5E-17		0.0497	[0.038-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
781	chr20	25719148	25719149	rs1343357	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	20p11.1		rs1343357-A	NR	5E-6		1.13	[1.07-1.2]	Illumina [7105229] (imputed)	N
781	chr20	25810527	25810531	rs370583979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20p11.1		rs370583979-C	NR	5E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
782	chr20	25837490	25837491	rs138319634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20p11.1	FAM182B	rs138319634-T	0.163938	2E-10		0.019461723	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
782	chr20	25837490	25837491	rs138319634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.1	NR	rs138319634-T	0.154924	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
782	chr20	25837490	25837491	rs138319634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20p11.1	FAM182B	rs138319634-T	0.1611	4E-12		0.03419791	[0.025-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
783	chr20	25966710	25966710	rs35665365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20p11.1		rs35665365-GCAA	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
783	chr20	25975673	25975674	rs6051080	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	20p11.1	NANP	rs6051080-A	0.649	1E-7	(same direction)	1.12	[1.08-1.17]	Illumina [up to 6000000] (imputed)	N
783	chr20	25988868	25988869	rs143003898	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	20p11.1		rs143003898-C	0.83497	7E-14		0.0420787	[0.031-0.053] unit increase	NR [11722792] (imputed)	N
783	chr20	25988868	25988869	rs143003898	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.1	NR	rs143003898-A	0.14655	7E-16				Affymetrix, Illumina [24332387] (imputed)	N
783	chr20	26082756	26082757	rs193078978	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	20p11.1	NR	rs193078978-?	NR	2E-6	(EA)	0.3087	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
784	chr20	26120083	26120084	rs2801046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.1	NR	rs2801046-A	NR	3E-25		0.0261	[0.021-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
784	chr20	26120083	26120084	rs2801046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20p11.1	NR	rs2801046-A	NR	2E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
784	chr20	26135207	26135208	rs6138813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20p11.1		rs6138813-?	NR	3E-14				NR [~ 8900000] (imputed)	N
784	chr20	26156864	26156865	rs186357284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.1	NR	rs186357284-C	0.0184011	2E-53				Affymetrix, Illumina [24588908] (imputed)	N
784	chr20	26156864	26156865	rs186357284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20p11.1	NR	rs186357284-C	0.01889	2E-55		0.133363	[0.12-0.15] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
784	chr20	26156864	26156865	rs186357284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20p11.1	NR	rs186357284-C	0.0183947	2E-18				Affymetrix, Illumina [19872809] (imputed)	N
784	chr20	26156864	26156865	rs186357284	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20p11.1	NR	rs186357284-C	0.018842	3E-21		0.081054	[0.064-0.098] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
784	chr20	26166051	26166052	rs73907728	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20p11.1	NR	rs73907728-T	NR	7E-11		0.0318	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
784	chr20	26181231	26181232	rs703764	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	20p11.1	AL121904.1	rs703764-A	0.021651	4E-8				Affymetrix, Illumina [NR] (imputed)	N
784	chr20	26181231	26181232	rs703764	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20p11.1	NR	rs703764-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
784	chr20	26181231	26181232	rs703764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20p11.1		rs703764-?	NR	2E-10				NR [~ 8900000] (imputed)	N
784	chr20	26182412	26182413	rs76574427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20p11.1		rs76574427-C	NR	2E-11		0.0456	[0.032-0.059] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
784	chr20	26188963	26188963	rs367883420	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	20p11.1		rs367883420-C	0.2068	4E-7		2.607		Illumina [7608150]	N
784	chr20	26201701	26201702	rs529153205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20p11.1		rs529153205-C	NR	1E-36		0.1191	[0.1-0.14] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
785	chr20	26248203	26248205	rs375938082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20p11.1	NR	rs375938082-D	0.377012	2E-11		0.014088	[0.01-0.0182] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
785	chr20	26248216	26248217	rs398035553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20p11.1		rs398035553-A	NR	7E-9		0.0144	[0.0095-0.0193] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
785	chr20	26255995	26255996	rs816535	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	20p11.1	intergenic	rs816535-C	0.811	1E-6		1.8	[NR]	Illumina [3922209] (imputed)	N
785	chr20	26264415	26264416	rs1307629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20p11.1		rs1307629-G	NR	3E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
785	chr20	26273990	26273991	rs201475383	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20p11.1	FAM182B	rs201475383-G	0.9663	9E-10		0.0240169	[0.016-0.032] unit increase	Affymetrix [12370749]	N
785	chr20	26273990	26273991	rs201475383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	20p11.1		rs201475383-?	NR	3E-8				NR [~ 8900000] (imputed)	N
785	chr20	26313676	26313677	rs6051320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20p11.1		rs6051320-?	NR	2E-8				NR [~ 8900000] (imputed)	N
809	chr20	29457691	29457692	rs2145108	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20q11.1	LINC01597	rs2145108-G	0.740782	5E-8		0.0132645	[0.0084-0.0181] unit decrease	NR [16516521] (imputed)	N
810	chr20	29517803	29517804	rs6057240	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	20q11.1		rs6057240-G	0.78034	2E-8		0.0284171	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
810	chr20	29539587	29539588	rs187067151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q11.1		rs187067151-T	NR	3E-8		0.037	[0.024-0.05] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
810	chr20	29539587	29539588	rs187067151	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q11.1	FRG1B	rs187067151-G	0.965963	2E-11		0.0266801	[0.019-0.034] unit increase	Affymetrix [12370749]	N
810	chr20	29573648	29573649	rs574174001	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.1	RP4-610C12.1	rs574174001-T	0.006	4E-18	(Cystatin-F, CST7.3302.58.1)	1.39	[1.08-1.7] unit increase	Affymetrix [10572788] (imputed)	N
811	chr20	29650348	29650349	rs138887197	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	20q11.21	FRG1BP	rs138887197-T	NR	1E-8		1.86	[1.50-2.30]	Illumina [13976150] (imputed)	N
812	chr20	29804207	29804208	rs28503795	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs28503795-?	NR	1E-9	(left pallidum)			NR [9227495] (imputed)	N
812	chr20	29866055	29866056	rs73102051	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q11.21	NR	rs73102051-A	0.0122	2E-8	(GAMT)	0.1822	NR unit increase	Illumina [1671387] (imputed)	N
812	chr20	29882207	29882208	rs6061081	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.21	NR	rs6061081-?	NR	3E-21				Affymetrix [NR]	N
813	chr20	29893500	29893501	rs6061162	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	20q11.21	DEFB116	rs6061162-T	0.912	5E-8		0.022	[0.014-0.03] unit increase	Illumina [~ 250000] (imputed)	N
813	chr20	29893500	29893501	rs6061162	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	20q11.21	DEFB116	rs6061162-T	0.9067	1E-8		0.019747043	[0.013-0.027] unit increase	Affymetrix [11514654] (imputed)	N
813	chr20	29920854	29920855	rs138243157	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Endometrial cancer	2,037 European ancestry cases, 410,350 European ancestry controls	NA	20q11.21		rs138243157-G	0.130334	4E-7		1.2507818	NR	Affymetrix [7846216] (imputed)	N
813	chr20	29934213	29934214	rs36094783	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	20q11.21	DEFB118	rs36094783-G	0.932	3E-8		0.057	[0.037-0.077] unit decrease	Affymetrix [~ 9000000] (imputed)	N
813	chr20	29946967	29946968	rs6058782	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q11.21	NR	rs6058782-T	0.908	2E-11	(Conditioned on chr20:31175258)	0.029710341	[0.021-0.038] unit increase	NR [~ 10000000] (imputed)	N
813	chr20	29957445	29957446	rs760997	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs760997-?	NR	6E-9	(left pallidum)			NR [9227495] (imputed)	N
813	chr20	29960786	29960787	rs34247288	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	20q11.21	DEFB116, DEFB118, DEFB115, DEFB121, DEFB123, BCL2L1, TPX2	rs34247288-?		2E-6				Illumina [2668805]	N
813	chr20	29966531	29966532	rs77241905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.21		rs77241905-?	NR	4E-8				NR [~ 8900000] (imputed)	N
813	chr20	29966531	29966532	rs77241905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q11.21		rs77241905-?	NR	9E-10				NR [~ 8900000] (imputed)	N
813	chr20	29984179	29984180	rs73108020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q11.21		rs73108020-A	NR	3E-15		0.0235	[0.018-0.029] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
813	chr20	29991044	29991045	rs6119324	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q11.21	DEFB121	rs6119324-C	0.811031	8E-20		0.00274565	[0.0022-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
813	chr20	29999086	29999087	rs2376549	30281874	Tanikawa C	2018-10-03	Cancer Sci	A GWAS identifies gastric cancer susceptibility loci at 12q24.11-12 and 20q11.21.	Gastric cancer	6,171 Japanese ancestry cases, 27,178 Japanese ancestry controls	5,336 Japanese ancestry cases, 11,726 Japanese ancestry controls	20q11.21	NR	rs2376549-C	NR	8E-10		1.109		Illumina [6573681] (imputed)	N
813	chr20	30006858	30006859	rs73108077	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	20q11.21	DEFB122	rs73108077-C	0.06	2E-6		0.83	[0.5-1.16] unit decrease	Illumina [~ 31000000] (imputed)	N
814	chr20	30057698	30057699	rs4328703	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs4328703-?	NR	5E-11	(left pallidum)			NR [9227495] (imputed)	N
814	chr20	30060514	30060515	rs66974934	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs66974934-?	NR	2E-9	(left pallidum)			NR [9227495] (imputed)	N
814	chr20	30061052	30061053	rs1543438	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs1543438-?	NR	1E-8	(right pallidum)			NR [9227495] (imputed)	N
814	chr20	30079276	30079278	rs200954698	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20q11.21		rs200954698-T	NR	5E-8		0.0208	[0.013-0.028] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
814	chr20	30115522	30115523	rs45565536	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q11.21	NR	rs45565536-A	NR	6E-15		0.0502	[0.038-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
814	chr20	30115522	30115523	rs45565536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.21	NR	rs45565536-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
814	chr20	30117955	30117956	rs145077631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q11.21		rs145077631-G	NR	1E-8		0.0414	[0.027-0.056] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
814	chr20	30117955	30117956	rs145077631	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.21		rs145077631-?	NR	4E-11		0.0436771	[0.031-0.057] unit decrease	Affymetrix [20259828] (imputed)	N
814	chr20	30133817	30133818	rs4911156	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q11.21		rs4911156-A	0.398	2E-10				Affymetrix [10369434] (imputed)	N
814	chr20	30143277	30143278	rs6059958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q11.21	HM13	rs6059958-C	0.829258	1E-8		0.0146548	[0.0096-0.0197] unit decrease	Affymetrix [NR] (imputed)	N
814	chr20	30143277	30143278	rs6059958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q11.21	HM13	rs6059958-C	0.829316	5E-11		0.0172529	[0.012-0.022] unit decrease	Affymetrix [NR] (imputed)	N
815	chr20	30162351	30162355	rs150929054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	20q11.21	HM13-AS1	rs150929054-T	0.0211	5E-9		0.07456701	[0.05-0.1] unit decrease	Affymetrix [~ 2500000] (imputed)	N
815	chr20	30169672	30169673	rs6060114	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q11.21	HM13-AS1, ID1	rs6060114-T		2E-6		0.259	unit increase	Affymetrix [at least 2696785] (imputed)	N
815	chr20	30169672	30169673	rs6060114	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q11.21	HM13-AS1, ID1	rs6060114-T		7E-13		0.237	unit increase	Affymetrix [at least 2696785] (imputed)	N
815	chr20	30171208	30171209	rs6060118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q11.21		rs6060118-?	NR	2E-7				NR [~ 8900000] (imputed)	N
815	chr20	30184865	30184866	rs6120815	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.21	intergenic	rs6120815-T	0.7246	2E-8		0.015	[0.0097-0.0203] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
815	chr20	30211596	30211597	rs6088793	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.21	intergenic	rs6088793-T	0.7225	3E-8		0.0162	[0.011-0.022] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
815	chr20	30219822	30219823	rs6060395	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060395-?	NR	2E-9	(left putamen)			NR [9227495] (imputed)	N
815	chr20	30219822	30219823	rs6060395	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060395-?	NR	1E-8	(right putamen)			NR [9227495] (imputed)	N
815	chr20	30225791	30225792	rs6088855	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q11.21	COX4I2	rs6088855-C	0.801132	4E-13		0.0169772	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
815	chr20	30225791	30225792	rs6088855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q11.21		rs6088855-?	NR	3E-10				NR [~ 8900000] (imputed)	N
815	chr20	30246804	30246805	rs192991204	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q11.21		rs192991204-C	0.979	2E-31				Affymetrix [10369434] (imputed)	N
815	chr20	30250941	30250942	rs192009275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q11.21	BCL2L1	rs192009275-T	0.255462	1E-12		0.018912692	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr20	30253818	30253819	rs763223337	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q11.21		rs763223337-?	NR	2E-10		0.767223	[0.53-1.01] unit decrease	NR [9800000] (imputed)	N
815	chr20	30254772	30254773	rs6121038	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121038-?	NR	3E-15	(left pallidum)			NR [9227495] (imputed)	N
815	chr20	30254772	30254773	rs6121038	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121038-?	NR	2E-16	(right pallidum)			NR [9227495] (imputed)	N
815	chr20	30254772	30254773	rs6121038	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121038-?	NR	2E-14	(right putamen)			NR [9227495] (imputed)	N
815	chr20	30254772	30254773	rs6121038	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121038-?	NR	1E-13	(left putamen)			NR [9227495] (imputed)	N
815	chr20	30258540	30258541	rs10439607	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs10439607-A	0.3086	4E-16		8.129	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
815	chr20	30258540	30258541	rs10439607	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs10439607-A	0.308	7E-10		6.17	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
815	chr20	30258540	30258541	rs10439607	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs10439607-A	0.3083	1E-11		6.763	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
815	chr20	30262158	30262159	rs6060627	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20q11.21	CPED1	rs6060627-?		2E-22				NR [7428630] (imputed)	N
815	chr20	30268183	30268184	rs6088962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q11.21		rs6088962-T	NR	1E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
816	chr20	30283168	30283169	rs77962418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs77962418-A	0.0223680000000001	1E-27		0.081877604	[0.067-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr20	30283168	30283169	rs77962418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs77962418-A	0.0223719999999999	1E-30		0.08641204	[0.072-0.101] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr20	30283168	30283169	rs77962418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q11.21		rs77962418-?	NR	3E-29				NR [~ 8900000] (imputed)	N
816	chr20	30286190	30286191	rs6060775	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060775-?	NR	4E-9	(right pallidum)			NR [9227495] (imputed)	N
816	chr20	30286190	30286191	rs6060775	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060775-?	NR	2E-8	(left pallidum)			NR [9227495] (imputed)	N
816	chr20	30289038	30289039	rs6060796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q11.21		rs6060796-?	NR	5E-14				NR [~ 8900000] (imputed)	N
816	chr20	30294033	30294034	rs6060821	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	20q11.21	BCL2L1, COX4I2, TPX2, MYLK2, TTLL9, FOXS1	rs6060821-?	NR	4E-6	(multivariate)			Perlegen [1871025] (imputed)	N
816	chr20	30294681	30294682	rs80054178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q11.21		rs80054178-C	NR	2E-55		0.1223	[0.11-0.14] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
816	chr20	30294681	30294682	rs80054178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20q11.21		rs80054178-C	NR	3E-18		0.0518	[0.04-0.063] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
816	chr20	30294681	30294682	rs80054178	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q11.21		rs80054178-T	0.978	5E-38				Affymetrix [10369434] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs80054178-C	0.022602	1E-63		0.12814835	[0.11-0.14] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs80054178-C	0.022599	1E-50		0.11494077	[0.1-0.13] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs80054178-C	0.0211992	9E-84				Affymetrix, Illumina [24588908] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q11.21	NR	rs80054178-C	0.0217	2E-87		0.12727	[0.11-0.14] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs80054178-C	0.0219248	5E-31				Affymetrix, Illumina [19872809] (imputed)	N
816	chr20	30294681	30294682	rs80054178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q11.21	NR	rs80054178-C	0.022394	9E-34		0.081789	[0.069-0.095] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
816	chr20	30294681	30294682	rs80054178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs80054178-C	0.0226	4E-32		0.145199	[0.12-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr20	30294681	30294682	rs80054178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20q11.21	BCL2L1, RP11-243J16.7	rs80054178-C	0.0226	3E-24		0.1248083	[0.1-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
816	chr20	30296421	30296422	rs73117925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20q11.21	NR	rs73117925-T	NR	9E-11		0.033	[0.023-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
816	chr20	30306723	30306724	rs6087771	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6087771-T	0.7	4E-18		8.672	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
816	chr20	30306723	30306724	rs6087771	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6087771-T	0.7006	6E-9		5.829	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
816	chr20	30306723	30306724	rs6087771	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6087771-T	0.7001	4E-12		6.923	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
816	chr20	30306723	30306724	rs6087771	29147026	Chen CH	2017-11-16	Sci Rep	Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure.	Putamen volume	12,596 European ancestry individuals	NA	20q11.21	BCL2L1	rs6087771-?	NR	2E-9		41.038	[27.67-54.41] mm3 increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
816	chr20	30306723	30306724	rs6087771	25607358	Hibar DP	2015-01-21	Nature	Common genetic variants influence human subcortical brain structures.	Subcortical brain region volumes	up to 13,171 European ancestry individuals	up to 15,130 European ancestry individuals, 545 Japanese ancestry individuals, 736 Mexican American individuals	20q11.21	BCL2L1	rs6087771-T	0.71	1E-12	(Putamen, EA)	33.58	[24.31-42.85] mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
816	chr20	30325754	30325755	rs6060912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs6060912-A	0.217818	3E-26				Affymetrix, Illumina [24332387] (imputed)	N
816	chr20	30325754	30325755	rs6060912	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q11.21	NR	rs6060912-A	0.213722	1E-28		0.02509	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
816	chr20	30325754	30325755	rs6060912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q11.21		rs6060912-?	NR	8E-22				NR [~ 8900000] (imputed)	N
816	chr20	30325764	30325765	rs6087775	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q11.21		rs6087775-A	0.32	3E-11		6.65	z score increase	Affymetrix [9061022] (imputed)	N
816	chr20	30347831	30347832	rs6060930	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060930-?	NR	8E-13	(right pallidum)			NR [9227495] (imputed)	N
816	chr20	30347831	30347832	rs6060930	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060930-?	NR	6E-11	(right putamen)			NR [9227495] (imputed)	N
816	chr20	30347831	30347832	rs6060930	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060930-?	NR	2E-11	(left pallidum)			NR [9227495] (imputed)	N
816	chr20	30347831	30347832	rs6060930	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6060930-?	NR	1E-10	(left putamen)			NR [9227495] (imputed)	N
816	chr20	30349469	30349470	rs112572629	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q11.21	TPX2	rs112572629-G	0.045373	2E-12		0.03855229	[0.028-0.049] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30355738	30355739	rs60084722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.21	TPX2	rs60084722-C	0.202763	5E-12		0.020048255	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr20	30355738	30355739	rs60084722	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	20q11.21	TPX2, BCL2L1, HM13	rs60084722-?	NR	2E-17				NR [NR]	N
816	chr20	30355738	30355739	rs60084722	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	20q11.21	TPX2	rs60084722-CT	0.79	2E-17		0.003	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
816	chr20	30357011	30357012	rs11477197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q11.21	TPX2	rs11477197-T	0.222504	9E-37		0.034762662	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30367382	30367383	rs6060941	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q11.21		rs6060941-T	0.32	6E-9		5.83	z score increase	Affymetrix [9061022] (imputed)	N
816	chr20	30367382	30367383	rs6060941	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q11.21		rs6060941-C	0.712	9E-16				Affymetrix [10369434] (imputed)	N
816	chr20	30369089	30369090	rs113818546	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q11.21		rs113818546-C	0.787	1E-8				Affymetrix [10369434] (imputed)	N
816	chr20	30392883	30392884	rs6089075	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q11.21	COX4I2, BCL2L1, AL160175.1, TPX2, MYLK2, FOXS1, DUSP15, TTLL9	rs6089075-?		1E-14				NR [7428630] (imputed)	N
816	chr20	30394516	30394517	rs6060960	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	20q11.21	BCL2L1, COX4I2, TPX2, MYLK2, TTLL9, FOXS1	rs6060960-?	NR	3E-6	(multivariate)			Perlegen [1871025] (imputed)	N
816	chr20	30401406	30401406	rs58904263	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q11.21		rs58904263-AG	NR	9E-36		0.0359	[0.03-0.042] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
816	chr20	30401406	30401406	rs58904263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q11.21	RP11-243J16.8	rs58904263-AG	0.219282	4E-17		0.023021683	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr20	30401406	30401406	rs58904263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q11.21	RP11-243J16.8	rs58904263-AG	0.2194	4E-47		0.03908184	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30401406	30401406	rs58904263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.21	RP11-243J16.8	rs58904263-AG	0.219318	1E-48		0.0386392	[0.034-0.044] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30401406	30401406	rs58904263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q11.21	RP11-243J16.8	rs58904263-AG	0.219333	3E-42		0.03649705	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
816	chr20	30401406	30401406	rs58904263	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q11.21	RP11-243J16.8	rs58904263-AG	0.2195	3E-10		0.02735152	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr20	30408579	30408580	rs4911532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q11.21		rs4911532-?	NR	8E-8				NR [~ 8900000] (imputed)	N
817	chr20	30411821	30411822	rs6060973	30378284	Smajlagic D	2018-10-31	Brain Behav	Moderating effect of mode of delivery on the genetics of intelligence: Explorative genome-wide analyses in ALSPAC.	Verbal intelligence quotient (cesarean section interaction)	519 European ancestry child cases, 1,902 European ancestry child controls	NA	20q11.21	NR	rs6060973-T	NR	5E-6		3.33	[1.9-4.75] unit decrease	Illumina [2141747] (imputed)	N
817	chr20	30420923	30420924	rs6060983	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	20q11.21	ROBO2	rs6060983-?		2E-12				NR [7428630] (imputed)	N
817	chr20	30420923	30420924	rs6060983	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	20q11.21	ADAMTS3	rs6060983-?		7E-12				NR [7428630] (imputed)	N
817	chr20	30420923	30420924	rs6060983	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	20q11.21	MYLK2	rs6060983-T		6E-7		0.0767	[0.047-0.107] unit increase	Illumina [NR]	N
817	chr20	30420923	30420924	rs6060983	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Putamen volume	37,571 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6060983-T	0.6912	2E-15		7.961	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
817	chr20	30420923	30420924	rs6060983	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Pallidum volume	34,413 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6060983-T	0.6909	1E-8		5.706	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
817	chr20	30420923	30420924	rs6060983	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Caudate nucleus volume	37,741 European ancestry individuals	341 South East and East Asian ancestry individuals, 769 African American individuals	20q11.21	NR	rs6060983-T	0.6914	1E-12		7.096	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
817	chr20	30420923	30420924	rs6060983	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20q11.21	MYLK2	rs6060983-C	0.2991	5E-22		0.03854436	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
817	chr20	30420923	30420924	rs6060983	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20q11.21	MYLK2	rs6060983-C	0.2992	6E-17		0.03335295	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
817	chr20	30421223	30421224	rs6087783	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q11.21	MYLK2	rs6087783-G	0.288311	7E-51		0.03753816	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr20	30426296	30426297	rs6060986	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q11.21		rs6060986-G	0.711	1E-24				Affymetrix [10369434] (imputed)	N
817	chr20	30426296	30426297	rs6060986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q11.21	MYLK2	rs6060986-A	0.288672	1E-39		0.033656072	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr20	30427076	30427077	rs6060987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs6060987-A	0.221852	4E-68				Affymetrix, Illumina [24246363] (imputed)	N
817	chr20	30427076	30427077	rs6060987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q11.21	NR	rs6060987-A	0.218503	2E-70		0.03932	[0.035-0.044] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
817	chr20	30427076	30427077	rs6060987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs6060987-A	0.221624	8E-54				Affymetrix, Illumina [20825802] (imputed)	N
817	chr20	30427076	30427077	rs6060987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q11.21	NR	rs6060987-A	0.218149	6E-57		0.037191	[0.033-0.042] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
817	chr20	30427076	30427077	rs6060987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.21		rs6060987-?	NR	9E-46				NR [~ 8900000] (imputed)	N
817	chr20	30427076	30427077	rs6060987	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q11.21	MYLK2	rs6060987-A	0.2166	1E-18		0.03787946	[0.029-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr20	30433351	30433352	rs6121246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs6121246-?	NR	1E-12				NR [~ 8900000] (imputed)	N
817	chr20	30433351	30433352	rs6121246	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q11.21	FOXS1	rs6121246-T	0.2155	2E-17		0.03694708	[0.028-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr20	30433910	30433920	rs140260150	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q11.21		rs140260150-C	NR	1E-31		0.0339	[0.028-0.04] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
817	chr20	30436087	30436088	rs8118150	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs8118150-?	NR	6E-10	(left pallidum)			NR [9227495] (imputed)	N
817	chr20	30477881	30477882	rs6121264	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121264-?	NR	3E-8	(right putamen)			NR [9227495] (imputed)	N
817	chr20	30477881	30477882	rs6121264	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.21	NR	rs6121264-?	NR	1E-8	(left putamen)			NR [9227495] (imputed)	N
817	chr20	30489669	30489670	rs2103656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q11.21		rs2103656-?	NR	2E-10				NR [~ 8900000] (imputed)	N
818	chr20	30561159	30561160	rs74397018	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.21	XKR7	rs74397018-A	0.0431	1E-11		0.0321	[0.023-0.041] unit decrease	Affymetrix [18391927] (imputed)	N
818	chr20	30561159	30561160	rs74397018	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs74397018-?	NR	6E-10				NR [~ 8900000] (imputed)	N
818	chr20	30610468	30610469	rs146973403	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20q11.21		rs146973403-?	NR	9E-10		1.01466	[0.68-1.35] unit decrease	NR [9800000] (imputed)	N
818	chr20	30615412	30615413	rs6089150	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	20q11.21	CCM2L	rs6089150-G	0.08	6E-6		0.33	unit increase	Illumina [5600000] (imputed)	N
818	chr20	30628981	30628982	rs144017103	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	20q11.21	CCM2L, HCK	rs144017103-?	0.98	1E-8		1.1764705	[1.04-1.32]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
818	chr20	30633078	30633079	rs112938712	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q11.21	HCK	rs112938712-G	0.859117	4E-14		0.00261035	[0.002-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
818	chr20	30644320	30644320	rs369307656	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.21	HCK	rs369307656-G	0.751106	5E-8	(-180 ms)	0.0364718	[0.023-0.05] unit increase	Affymetrix [10000000] (imputed)	N
818	chr20	30644320	30644320	rs369307656	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.21	HCK	rs369307656-G	0.751106	3E-8	(-178 ms)	0.0366279	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
818	chr20	30649833	30649834	rs1987960	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q11.21	HCK	rs1987960-T	0.0475408	1E-8		0.0189251	[0.012-0.025] unit decrease	Affymetrix [12370749]	N
818	chr20	30649833	30649834	rs1987960	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.21	NR	rs1987960-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
818	chr20	30649833	30649834	rs1987960	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q11.21	NA	rs1987960-T	0.0456	5E-10		0.0293	[0.02-0.039] unit decrease	NR [~ 27400000] (imputed)	N
818	chr20	30650302	30650303	rs6058523	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.21	POFUT1	rs6058523-A	0.7403125	2E-14	(POFUT1, 5634_39_3)	0.218769	[0.16-0.27] unit increase	Illumina [> 1000000] (imputed)	N
818	chr20	30662804	30662805	rs3746601	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	20q11.21	NR	rs3746601-C	0.3603	3E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
819	chr20	30676315	30676316	rs2223785	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	20q11.21	NR	rs2223785-C	0.02	3E-7		2.8	unit decrease	Illumina [8591557] (imputed)	N
819	chr20	30698921	30698922	rs17093831	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs17093831-C	NR	1E-19		0.176	[0.062-0.29] unit increase	Affymetrix [8351141] (imputed)	N
819	chr20	30699631	30699632	rs6058526	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	20q11.21	TM9SF4	rs6058526-G	0.141	1E-6		1.066	[1.003-1.133] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
819	chr20	30725647	30725648	rs6142618	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q11.21	TM9SF4, PLAGL2, KIF3B, ASXL1, POFUT1, C20orf112	rs6142618-?		6E-6				Illumina [9725440] (imputed)	N
819	chr20	30725647	30725648	rs6142618	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q11.21	HCK	rs6142618-G	0.564	6E-10		1.072	[1.041-1.103]	Affymetrix, Illumina [1230000] (imputed)	N
819	chr20	30727682	30727683	rs4911198	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.21	NR	rs4911198-?	NR	8E-7				Affymetrix [NR]	N
819	chr20	30761182	30761183	rs6142630	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	20q11.21	TM9SF4	rs6142630-A	NR	2E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
819	chr20	30761182	30761183	rs6142630	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	20q11.21	TM9SF4	rs6142630-A	NR	2E-6		1.0328273	[1.02-1.05]	Affymetrix, Illumina [8326000] (imputed)	N
819	chr20	30770204	30770205	rs13040716	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	20q11.21	ASXL1, HCK, KIF3B, NOL4L, PLAGL2, POFUT1, TM9SF4, TSPY26P	rs13040716-?	NR	4E-8				Affymetrix [up to 7325140] (imputed)	N
819	chr20	30770374	30770375	rs6119771	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	20q11.21	TSPY26P	rs6119771-C	0.4257	2E-8		0.0112904	[0.0074-0.0152] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
819	chr20	30797627	30797628	rs11905172	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	20q11.21	POFUT1	rs11905172-C	0.156	8E-7		1.062	[1.002-1.127] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
820	chr20	30815754	30815755	rs76143353	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.21	POFUT1	rs76143353-T	0.06	9E-58	(GDP-fucose protein O-fucosyltransferase 1, POFUT1.5634.39.3)	0.8	[0.7-0.9] unit decrease	Affymetrix [10572788] (imputed)	N
820	chr20	30818822	30818823	rs35968884	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.21	NR	rs35968884-A	0.006	2E-56	(GDP-fucose protein O-fucosyltransferase 1, POFUT1.5634.39.3)	2.43	[2.14-2.72] unit increase	Affymetrix [10572788] (imputed)	N
820	chr20	30818849	30818850	rs17268666	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POFUT1	5,363 Icelandic ancestry individuals	NA	20q11.21		rs17268666-T	0.03969	1E-89		0.944359	[0.85-1.04] unit decrease	Illumina [7506463] (imputed)	N
820	chr20	30849516	30849517	rs4243971	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q11.21	intergenic	rs4243971-?	NR	5E-9	(subset analysis)			Illumina [130052]	N
820	chr20	30849516	30849517	rs4243971	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q11.21	NR	rs4243971-C	0.56	9E-7	(EA)	1.0498904		Affymetrix, Illumina [~ 9000000] (imputed)	N
820	chr20	30849516	30849517	rs4243971	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q11.21	NR	rs4243971-C	0.56	3E-6	(EA)	1.0574708	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
820	chr20	30853821	30853822	rs6141652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.21		rs6141652-C	0.381018	3E-24		0.024612365	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr20	30855745	30855746	rs6087358	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.21		rs6087358-G	0.860705	7E-14		0.025840474	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr20	30855745	30855746	rs6087358	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	20q11.21	KIF3B	rs6087358-G	0.869	7E-6		1.057	[0.993-1.124] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
820	chr20	30856136	30856137	rs77476644	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs77476644-G	NR	6E-23		0.189	[0.071-0.307] unit increase	Affymetrix [8351141] (imputed)	N
820	chr20	30858966	30858967	rs4413223	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20q11.21	C20orf112	rs4413223-A	0.1722	1E-13		0.0232	[0.017-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
820	chr20	30858966	30858967	rs4413223	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20q11.21	C20orf112	rs4413223-A	0.1722	1E-8		0.0174	[0.011-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
820	chr20	30864278	30864279	rs6058613	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20q11.21	KIF3B	rs6058613-C	0.161462	2E-9		0.0171021	[0.012-0.023] unit increase	NR [16516521] (imputed)	N
820	chr20	30864278	30864279	rs6058613	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	20q11.21	KIF3B	rs6058613-C	0.162209	4E-8		0.0292104	[0.019-0.04] unit increase	Affymetrix [641018] (imputed)	N
820	chr20	30877983	30877984	rs3787374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q11.21		rs3787374-?	NR	5E-11				NR [~ 8900000] (imputed)	N
820	chr20	30899667	30899668	rs6141668	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q11.21		rs6141668-C	0.633	3E-13				Affymetrix [10369434] (imputed)	N
820	chr20	30899667	30899668	rs6141668	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q11.21		rs6141668-C	0.633	3E-28				Affymetrix [10369434] (imputed)	N
820	chr20	30899667	30899668	rs6141668	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q11.21	KIF3B	rs6141668-T	0.3676	3E-22		0.03597901	[0.029-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
820	chr20	30900713	30900714	rs6058638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q11.21	KIF3B	rs6058638-G	0.139024	2E-10		0.021617914	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr20	30911916	30911916	rs35786299	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q11.21	KIF3B	rs35786299-GA	0.3751	4E-15		0.02914055	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
821	chr20	30967912	30967913	rs2424880	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	20q11.21	NR	rs2424880-T	0.438	1E-8		0.00881264	[0.0058-0.0119] unit decrease	NR [9732723] (imputed)	N
821	chr20	30970430	30970431	rs3861818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q11.21	ASXL1	rs3861818-A	0.444696	2E-9		0.016071107	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
821	chr20	30987549	30987550	rs8182876	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q11.21		rs8182876-C	0.623	6E-12				Affymetrix [10369434] (imputed)	N
821	chr20	30987549	30987550	rs8182876	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q11.21		rs8182876-C	0.623	7E-26				Affymetrix [10369434] (imputed)	N
821	chr20	30998215	30998216	rs6058684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q11.21		rs6058684-?	NR	2E-15				NR [~ 8900000] (imputed)	N
821	chr20	31009303	31009304	rs80188179	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.21		rs80188179-?	NR	1E-25				NR [~ 8900000] (imputed)	N
821	chr20	31042175	31042176	rs1737889	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20q11.21		rs1737889-?	NR	3E-6		0.002	[0.001-0.003] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
821	chr20	31042175	31042176	rs1737889	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20q11.21	C20orf112	rs1737889-T	0.22	4E-8		16.82	[10.8-22.84] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
821	chr20	31042175	31042176	rs1737889	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20q11.21	C20orf112	rs1737889-T	0.21	6E-7	(EA)	18.61	[11.3-25.92] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
821	chr20	31042594	31042595	rs1737890	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	20q11.21	NOL4L	rs1737890-T	0.219	9E-8		1.072	[1.017-1.13] (Stage 1 meta-analysis)	Affymetrix, Illumina [NR] (imputed)	N
821	chr20	31043368	31043369	rs55731315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs55731315-?	NR	2E-8				NR [~ 8900000] (imputed)	N
821	chr20	31046566	31046567	rs1555132	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	20q11.21	NOL4L	rs1555132-A	NR	1E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix [9304965] (imputed)	N
821	chr20	31048381	31048382	rs1555133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q11.21	C20orf112	rs1555133-A	0.310742	8E-24		0.025344318	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
821	chr20	31048381	31048382	rs1555133	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q11.21	C20orf112	rs1555133-A	0.3127	5E-17		0.03280431	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
821	chr20	31049030	31049031	rs565497590	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (recovery after exercise)	51,503 European ancestry individuals	NA	20q11.21	NOL4L	rs565497590-G	0.987	1E-8	(women)	0.214	[0.14-0.29] unit increase	Affymetrix [~ 9000000] (imputed)	N
821	chr20	31050804	31050805	rs1742982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q11.21		rs1742982-G	NR	3E-8		0.0257	[0.017-0.035] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
821	chr20	31050804	31050805	rs1742982	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs1742982-T	NR	3E-23		0.189	[0.071-0.307] unit increase	Affymetrix [8351141] (imputed)	N
821	chr20	31051698	31051699	rs1737893	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	20q11.21		rs1737893-T	0.3779	1E-9		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
821	chr20	31051698	31051699	rs1737893	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20q11.21	C20orf112	rs1737893-C	0.6194999999999999	9E-11		1.0256228		Affymetrix [11880941] (imputed)	N
821	chr20	31054701	31054702	rs1737894	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	20q11.21	NR	rs1737894-G	0.408	1E-11		0.016856	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
821	chr20	31054701	31054702	rs1737894	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	20q11.21	NR	rs1737894-G	0.408	8E-15		0.0172715	[0.013-0.022] unit increase	NR [9732723] (imputed)	N
822	chr20	31091205	31091206	rs293561	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q11.21	C20orf112	rs293561-T	0.637262	2E-8		0.0116655	[0.0076-0.0158] unit decrease	Affymetrix [NR] (imputed)	N
822	chr20	31091234	31091235	rs875519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q11.21	Intergenic	rs875519-T	0.6946	3E-8	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
822	chr20	31097876	31097877	rs293566	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q11.21		rs293566-C	0.31	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
822	chr20	31097876	31097877	rs293566	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q11.21	NR	rs293566-C	0.3273	1E-12				NR [9056863] (imputed)	N
822	chr20	31097876	31097877	rs293566	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	20q11.21	NOL4L, LOC101929698	rs293566-T	0.6472	2E-12		0.0694	[0.05-0.089] unit increase	NR [9744772] (imputed)	N
822	chr20	31097876	31097877	rs293566	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		20q11.21	NOL4L	rs293566-T	0.65	1E-8		0.081	NR unit increase	Illumina [2400000] (imputed)	N
822	chr20	31097876	31097877	rs293566	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		20q11.21	NOL4L	rs293566-T	0.65	1E-6		0.079	NR unit increase	Illumina [2400000] (imputed)	N
822	chr20	31098564	31098565	rs293567	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q11.21		rs293567-T	0.31	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
822	chr20	31099310	31099311	rs159428	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	20q11.21	NR	rs159428-T	0.485089	8E-9		0.036156133	[0.024-0.048] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
822	chr20	31099310	31099311	rs159428	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	20q11.21	NOL4L/-DT	rs159428-T	0.4633	4E-8				NR [7320282]	N
822	chr20	31099310	31099311	rs159428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q11.21	Intergenic	rs159428-T	0.4739	6E-10	(MTAG)	0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
822	chr20	31099310	31099311	rs159428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	20q11.21	Intergenic	rs159428-T	0.4739	7E-9		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
822	chr20	31104949	31104950	rs910889	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	20q11.21	C20orf112	rs910889-C	NR	1E-21		0.0460589	[0.037-0.056] unit increase	Affymetrix [16832071] (imputed)	N
822	chr20	31107276	31107276	rs11167171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q11.21	C20orf112	rs11167171-CAAAACACCCA	0.310073	1E-13		0.018436225	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31107398	31107399	rs6141743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q11.21	C20orf112	rs6141743-G	0.22701	2E-9		0.016049836	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31107398	31107399	rs6141743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20q11.21	C20orf112	rs6141743-G	0.2265	3E-11		0.02855631	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31107398	31107399	rs6141743	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20q11.21	C20orf112	rs6141743-G	0.2265	8E-9		0.02472932	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31108088	31108089	rs11305733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q11.21	C20orf112	rs11305733-C	0.269135	1E-24		0.026040237	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31108088	31108089	rs11305733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q11.21	C20orf112	rs11305733-C	0.269136	1E-18		0.022046037	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31108088	31108089	rs11305733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q11.21	C20orf112	rs11305733-C	0.269144	1E-13		0.018567154	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31108107	31108108	rs159058	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q11.21	NR	rs159058-C	0.2936	2E-16				NR [9056863] (imputed)	N
822	chr20	31108107	31108108	rs159058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q11.21	NR	rs159058-A	0.700731	2E-12		0.01483	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
822	chr20	31108107	31108108	rs159058	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q11.21	NA	rs159058-C	0.3111	2E-10	(Female)	1.0526316	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
822	chr20	31108107	31108108	rs159058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q11.21		rs159058-?	NR	2E-23				NR [~ 8900000] (imputed)	N
822	chr20	31108107	31108108	rs159058	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q11.21	C20orf112	rs159058-C	0.2995	3E-23		0.03841388	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31108107	31108108	rs159058	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q11.21	C20orf112	rs159058-C	0.2995	9E-22		0.03723105	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31108107	31108108	rs159058	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20q11.21	C20orf112	rs159058-C	0.2997	3E-13		0.0283789	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31111292	31111293	rs1868385	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q11.21	C20orf112	rs1868385-T	0.225162	5E-34		0.037681434	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
822	chr20	31111292	31111293	rs1868385	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q11.21		rs1868385-?	NR	2E-81				NR [~ 8900000] (imputed)	N
822	chr20	31123591	31123592	rs3746615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs3746615-A	0.759459	8E-81				Affymetrix, Illumina [22063850] (imputed)	N
822	chr20	31123591	31123592	rs3746615	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q11.21	NR	rs3746615-A	0.76212	1E-82		0.043292	[0.039-0.048] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
822	chr20	31125583	31125584	rs5841107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q11.21	C20orf112	rs5841107-C	0.321801	5E-18		0.020886688	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
822	chr20	31125583	31125584	rs5841107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q11.21	C20orf112	rs5841107-C	0.322056	1E-13		0.017867643	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
822	chr20	31125583	31125584	rs5841107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.21	C20orf112	rs5841107-C	0.321763	7E-34		0.0305216	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31125583	31125584	rs5841107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q11.21	C20orf112	rs5841107-C	0.32176	8E-30		0.027357873	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31125583	31125584	rs5841107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q11.21	C20orf112	rs5841107-C	0.32189	4E-15		0.019496327	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31125583	31125584	rs5841107	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20q11.21	C20orf112	rs5841107-C	0.3199	1E-10		0.02495351	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31125597	31125598	rs397865199	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q11.21		rs397865199-C	NR	1E-18		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
822	chr20	31140164	31140165	rs4911241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q11.21	C20orf112	rs4911241-T	0.237984	2E-13		0.019464439	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31140164	31140165	rs4911241	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	20q11.21	LOC149950	rs4911241-T	0.239	6E-13		0.0182	[0.013-0.023] unit increase	Illumina [~ 250000] (imputed)	N
822	chr20	31140164	31140165	rs4911241	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	20q11.21	NOL4L	rs4911241-T	NR	3E-10		0.017	[0.011-0.023] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
822	chr20	31142812	31142813	rs6119893	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	20q11.21	NOL4L	rs6119893-T		1E-10		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
822	chr20	31142812	31142813	rs6119893	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	20q11.21	C20orf112	rs6119893-T	0.327	1E-8		0.024	[0.016-0.032] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
822	chr20	31145414	31145415	rs6119897	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	20q11.21		rs6119897-G	0.762	4E-15		0.018	[0.014-0.022] unit decrease	Affymetrix [up to 90000000] (imputed)	N
822	chr20	31145414	31145415	rs6119897	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	20q11.21	C20orf203	rs6119897-A	0.2426	3E-12		0.016386494	[0.012-0.021] unit increase	Affymetrix [11514654] (imputed)	N
822	chr20	31145414	31145415	rs6119897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	20q11.21		rs6119897-?	NR	1E-10				NR [~ 8900000] (imputed)	N
822	chr20	31162590	31162590	rs143125561	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	20q11.21	NOL4L	rs143125561-CACGG	0.233	5E-9		1.1	[1.07-1.13]	Affymetrix [28509962] (imputed)	N
822	chr20	31163564	31163565	rs6141755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q11.21	C20orf112	rs6141755-T	0.235599	1E-12		0.01902471	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31163564	31163565	rs6141755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q11.21	C20orf112	rs6141755-T	0.235588	2E-11		0.017573703	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31163913	31163914	rs6119267	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q11.21	NR	rs6119267-G	0.3109	2E-20		1.0615711	[1.05-1.07]	Affymetrix, Illumina [NR] (imputed)	N
822	chr20	31163913	31163914	rs6119267	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q11.21	NA	rs6119267-G	0.3109	4E-12	(Male)	1.0752687	[1.06-1.09]	Affymetrix, Illumina [NR] (imputed)	N
822	chr20	31163913	31163914	rs6119267	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q11.21	Intergenic	rs6119267-C	0.6818	2E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
822	chr20	31163913	31163914	rs6119267	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q11.21	Intergenic	rs6119267-C	0.6763	4E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
822	chr20	31163913	31163914	rs6119267	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	20q11.21	C20orf112	rs6119267-G	0.3135	4E-30		0.04369443	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31165017	31165018	rs911526	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	20q11.21	LOC149950	rs911526-A	0.32	1E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
822	chr20	31165104	31165105	rs911527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q11.21	C20orf112	rs911527-T	0.238091	2E-11		0.017553275	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31173361	31173362	rs67696533	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20q11.21		rs67696533-G	0.694	1E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
822	chr20	31173361	31173362	rs67696533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	20q11.21	RP11-410N8.1	rs67696533-A	0.3119	5E-11		0.02494351	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31173361	31173362	rs67696533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	20q11.21	RP11-410N8.1	rs67696533-A	0.3118	2E-14		0.02882793	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31173361	31173362	rs67696533	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	20q11.21	RP11-410N8.1	rs67696533-A	0.3119	8E-14		0.02835001	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31175257	31175258	rs1555445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q11.21	NR	rs1555445-T	0.318	2E-17		0.0100021	[0.0077-0.0123] unit increase	NR [9732723] (imputed)	N
822	chr20	31175257	31175258	rs1555445	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q11.21	NR	rs1555445-T	0.318	8E-12		0.018762575	[0.013-0.024] unit increase	NR [~ 10000000] (imputed)	N
822	chr20	31177291	31177292	rs6141759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	20q11.21		rs6141759-A	0.665977	6E-9		0.0299335	[0.02-0.04] unit decrease	Illumina [13470073] (imputed)	N
822	chr20	31177985	31177986	rs6058750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	20q11.21	RP11-410N8.4, RP11-410N8.1	rs6058750-C	0.31256	2E-17		0.021061055	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr20	31181467	31181468	rs7266642	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.21		rs7266642-?	NR	5E-36				NR [~ 8900000] (imputed)	N
822	chr20	31181807	31181808	rs6057602	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.21		rs6057602-?	NR	3E-6		1.0562	[1.03-1.08]	NR [685523]	N
822	chr20	31189077	31189078	rs11697333	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q11.21	NR	rs11697333-T	0.674464	2E-10		0.0191659	[0.013-0.025] unit increase	Affymetrix [16580851] (imputed)	N
822	chr20	31191014	31191015	rs12480732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20q11.21		rs12480732-T	NR	6E-77		0.049	[0.044-0.054] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
822	chr20	31191014	31191015	rs12480732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.21	RP11-410N8.4	rs12480732-T	0.259955	5E-99		0.0539673	[0.049-0.059] unit increase	Affymetrix [93095623] (imputed)	N
822	chr20	31191014	31191015	rs12480732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q11.21	RP11-410N8.4	rs12480732-T	0.259923	1E-87		0.050563913	[0.046-0.056] unit increase	Affymetrix [93095623] (imputed)	N
822	chr20	31191014	31191015	rs12480732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs12480732-T	0.250123	2E-137				Affymetrix, Illumina [23467995] (imputed)	N
822	chr20	31191014	31191015	rs12480732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q11.21	NR	rs12480732-T	0.257776	9E-136		0.054282	[0.05-0.059] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
822	chr20	31191014	31191015	rs12480732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q11.21	RP11-410N8.4	rs12480732-T	0.2605	2E-54		0.06314604	[0.055-0.071] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31191014	31191015	rs12480732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q11.21	RP11-410N8.4	rs12480732-T	0.2605	2E-42		0.05557149	[0.048-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31191014	31191015	rs12480732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q11.21	RP11-410N8.4	rs12480732-T	0.2606	3E-44		0.05683643	[0.049-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
822	chr20	31192356	31192357	rs61114499	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q11.21		rs61114499-G	0.739	3E-32				Affymetrix [10369434] (imputed)	N
822	chr20	31192356	31192357	rs61114499	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q11.21		rs61114499-G	0.739	9E-33				Affymetrix [10369434] (imputed)	N
823	chr20	31195875	31195876	rs11906336	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q11.21	C20orf112	rs11906336-?	NR	2E-6	(carnosine)	0.5307166	[0.31-0.75] unit increase	Affymetrix [at least 2500000] (imputed)	N
823	chr20	31196470	31196471	rs8114375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q11.21	RP11-410N8.4	rs8114375-G	0.393768	3E-10		0.014554313	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr20	31209947	31209948	rs59107435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q11.21		rs59107435-?	NR	9E-9				NR [~ 8900000] (imputed)	N
823	chr20	31213646	31213647	rs1407256	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q11.21		rs1407256-G	NR	3E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
823	chr20	31213646	31213647	rs1407256	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20q11.21	C20orf203	rs1407256-G	0.145224	9E-9		0.06497499	[0.043-0.087] unit increase	Affymetrix [7288503] (imputed)	N
823	chr20	31213646	31213647	rs1407256	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q11.21	C20orf203	rs1407256-G	0.8337	6E-9		0.2925	[0.19-0.39] mmHg decrease	Affymetrix [NR] (imputed)	N
823	chr20	31216952	31216953	rs4911250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q11.21		rs4911250-?	NR	7E-8				NR [~ 8900000] (imputed)	N
823	chr20	31218260	31218261	rs6119921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	20q11.21		rs6119921-G	0.08315	8E-9		0.0468393	[0.031-0.063] unit increase	Illumina [13469940] (imputed)	N
823	chr20	31219806	31219807	rs464063	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	20q11.21	NR	rs464063-T	0.818178	1E-9		0.040278	[0.027-0.053] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
823	chr20	31219806	31219807	rs464063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q11.21		rs464063-?	NR	8E-13				NR [~ 8900000] (imputed)	N
823	chr20	31222768	31222769	rs6141766	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q11.21		rs6141766-?	NR	3E-15				NR [~ 8900000] (imputed)	N
823	chr20	31231267	31231268	rs6141769	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q11.21	NR	rs6141769-C	0.1619	4E-6		0.0162	[0.0093-0.0231] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
823	chr20	31239928	31239929	rs8120730	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q11.21	C20orf203	rs8120730-G	0.495622	8E-16		0.018181613	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr20	31241388	31241389	rs6057610	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	20q11.21	NR	rs6057610-T	0.5	1E-10		0.024576223	[0.017-0.032] unit increase	NR [1977400] (imputed)	N
823	chr20	31241388	31241389	rs6057610	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	20q11.21	NR	rs6057610-T	0.491	2E-8		0.034524694	[0.023-0.047] unit increase	NR [1977400] (imputed)	N
823	chr20	31246661	31246662	rs6141772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs6141772-C	0.143365	4E-32				Affymetrix, Illumina [19905671] (imputed)	N
823	chr20	31248264	31248265	rs17123518	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-485 sp002362485 abundance in stool	5,959 Finnish ancestry individuals	NA	20q11.21		rs17123518-T	0.015683	2E-9		0.254519	[0.17-0.34] unit increase	Illumina [7980478] (imputed)	N
823	chr20	31248264	31248265	rs17123518	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs17123518-T	NR	7E-28		0.229	[0.094-0.364] unit increase	Affymetrix [8351141] (imputed)	N
823	chr20	31248524	31248525	rs6057612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q11.21	C20orf203	rs6057612-G	0.509095	1E-13		0.016454766	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
823	chr20	31248524	31248525	rs6057612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q11.21	C20orf203	rs6057612-G	0.50916	2E-13		0.016479136	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr20	31255828	31255829	rs6058796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	20q11.21	C20orf203	rs6058796-T	0.1451	5E-16		0.04033086	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr20	31255828	31255829	rs6058796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	20q11.21	C20orf203	rs6058796-T	0.1452	9E-17		0.04109761	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr20	31255828	31255829	rs6058796	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	20q11.21	C20orf203	rs6058796-T	0.1451	1E-14		0.03846082	[0.029-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
823	chr20	31259365	31259366	rs6141779	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	20q11.21	C20orf203	rs6141779-T	0.144523	2E-22		0.03168959	[0.025-0.038] unit increase	Affymetrix [93095623] (imputed)	N
823	chr20	31262622	31262623	rs150845610	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs150845610-?	NR	2E-9				Illumina [7760689] (imputed)	N
823	chr20	31263323	31263324	rs6141333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	20q11.21		rs6141333-A	NR	8E-11		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
823	chr20	31263341	31263342	rs6141781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q11.21	C20orf203	rs6141781-T	0.147273	1E-21		0.0307974	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
823	chr20	31263341	31263342	rs6141781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	20q11.21	NR	rs6141781-T	0.147056	4E-29		0.032512	[0.027-0.038] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
823	chr20	31272927	31272928	rs34467919	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q11.21	C20orf203, COMMD7	rs34467919-?	NR	6E-9		0.018541176	[0.012-0.025] unit decrease	Illumina [27896057] (imputed)	N
823	chr20	31274734	31274740	rs142670696	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.21	BAK1P1	rs142670696-T	0.526567	2E-9		0.0128337	[0.0088-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
823	chr20	31275580	31275581	rs28530618	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	20q11.21	C20orf203, COMMD7	rs28530618-?	NR	4E-8		0.03816	[0.025-0.052] unit increase novel	Illumina [6108953] (imputed)	N
823	chr20	31275580	31275581	rs28530618	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	20q11.21	C20orf203	rs28530618-A	0.51	8E-11		0.024	[0.017-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
823	chr20	31291482	31291483	rs28482886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs28482886-?	NR	8E-12				NR [~ 8900000] (imputed)	N
823	chr20	31292296	31292298	rs780332590	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	20q11.21	COMMD7	rs780332590-?	0.209	3E-6		0.025	[0.015-0.035] unit increase	Affymetrix [~ 10446505] (imputed)	N
823	chr20	31313736	31313737	rs13036344	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	20q11.21	COMMD7	rs13036344-?	NR	9E-6		0.2	[0.12-0.28] unit increase	Illumina [1075436] (imputed)	N
823	chr20	31314624	31314625	rs2064933	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	20q11.21	NR	rs2064933-A	0.24	5E-13		0.027	[0.019-0.035] z score increase	Affymetrix [up to 10400000] (imputed)	N
823	chr20	31324134	31324135	rs6058847	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q11.21		rs6058847-?	NR	5E-8				Affymetrix [NR] (imputed)	N
823	chr20	31324134	31324135	rs6058847	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q11.21		rs6058847-C	0.238	2E-18				Affymetrix [10369434] (imputed)	N
824	chr20	31327143	31327144	rs11698914	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q11.21	COMMD7	rs11698914-C	0.233458	1E-24		0.031861	[0.026-0.038] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
824	chr20	31329703	31329704	rs6119946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q11.21		rs6119946-A	NR	3E-8		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
824	chr20	31330611	31330612	rs6119279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q11.21		rs6119279-?	NR	1E-12				NR [~ 8900000] (imputed)	N
824	chr20	31337486	31337487	rs1883730	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	20q11.21	NR	rs1883730-A	0.414	2E-13		0.0109312	[0.008-0.0138] unit decrease	NR [9732723] (imputed)	N
824	chr20	31340799	31340800	rs6087988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q11.21	NR	rs6087988-T	0.233	3E-15		0.0100605	[0.0076-0.0126] unit increase	NR [9732723] (imputed)	N
824	chr20	31342224	31342224	rs200947769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q11.21		rs200947769-AT	NR	5E-11		0.0182	[0.013-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
824	chr20	31346000	31346001	rs1007122	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	20q11.21	COMMD7, DNMT3B, MAPRE1	rs1007122-?	NR	4E-8		6.03606E-4	[-0.00422-0.00543] unit decrease	Affymetrix [25921788] (imputed)	N
824	chr20	31346000	31346001	rs1007122	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	20q11.21	COMMD7, DNMT3B, MAPRE1	rs1007122-?	NR	4E-8		0.0135008	[0.0087-0.0183] unit increase	Affymetrix [25921788] (imputed)	N
824	chr20	31347512	31347512	rs11480453	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q11.21		rs11480453-CA	NR	2E-18		0.0201	[0.016-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
824	chr20	31347512	31347512	rs11480453	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q11.21	NR	rs11480453-C	NR	4E-8		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
824	chr20	31347512	31347512	rs11480453	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	20q11.21	DNMT3B	rs11480453-C	0.6	3E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
824	chr20	31348749	31348750	rs6058869	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q11.21	DNMT3B	rs6058869-?	NR	4E-9	(subset analysis)			Illumina [130052]	N
824	chr20	31348749	31348750	rs6058869	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q11.21	NR	rs6058869-?	NR	3E-8	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
824	chr20	31349907	31349908	rs6087990	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	20q11.21	FBN2, SLC27A6	rs6087990-?		1E-9				NR [7428630] (imputed)	N
824	chr20	31349907	31349908	rs6087990	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q11.21	COMMD7, DNMT3B, MAPRE1, EFCAB8	rs6087990-?		8E-11				NR [7428630] (imputed)	N
824	chr20	31349907	31349908	rs6087990	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q11.21	NR	rs6087990-G	0.4056	6E-6	(EA)	1.0586283	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
824	chr20	31352584	31352585	rs4911253	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	20q11.21	DNMT3B	rs4911253-G	0.4556	2E-9		0.02173923	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr20	31353784	31353785	rs6058874	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q11.21	NR	rs6058874-G	0.402542	6E-9		0.0183636	[0.012-0.025] unit decrease	NR [19129689] (imputed)	N
824	chr20	31354966	31354967	rs780552580	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.21	DNMT3B	rs780552580-C	0.0016	2E-22		0.2777	[0.22-0.33] unit decrease	Affymetrix [18391927] (imputed)	N
824	chr20	31357096	31357097	rs1855349	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	20q11.21		rs1855349-T	0.40651	9E-7		0.033586	[0.02-0.047] unit increase	Affymetrix [15580782] (imputed)	N
824	chr20	31360382	31360383	rs2424908	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q11.21	DNMT3B	rs2424908-C		5E-10		0.189	unit decrease	Affymetrix [at least 2696785] (imputed)	N
824	chr20	31363366	31363367	rs55768819	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.21	NR	rs55768819-C	NR	4E-6		1.1967835	[1.11-1.29]	Affymetrix [5734850] (imputed)	N
824	chr20	31363366	31363367	rs55768819	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs55768819-T	NR	6E-47		0.268	[0.13-0.41] unit increase	Affymetrix [8351141] (imputed)	N
824	chr20	31366242	31366243	rs6141813	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q11.21	COMMD7	rs6141813-?	NR	7E-7	(glycerol-3-phosphate)	0.24431509	[0.15-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
824	chr20	31368959	31368960	rs6141814	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	20q11.21	NR	rs6141814-?		1E-9		0.0135023	[0.0091-0.0179] unit decrease	Affymetrix [19400418] (imputed)	N
824	chr20	31376281	31376282	rs4911259	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q11.21	DNMT3B	rs4911259-G	0.383	1E-9		1.075	[1.044-1.106]	Affymetrix, Illumina [1230000] (imputed)	N
824	chr20	31376994	31376995	rs6119285	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6119285-T		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31378689	31378690	rs910083	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	20q11.21	DNMT3B	rs910083-C	NR	4E-8		0.032	[0.021-0.043] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
824	chr20	31380071	31380072	rs1040553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q11.21	DNMT3B	rs1040553-T	0.445153	2E-13		0.01641665	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
824	chr20	31380200	31380201	rs1040555	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	20q11.21	DNMT3B	rs1040555-T	0.4449	1E-10		0.02319633	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
824	chr20	31380308	31380309	rs1474738	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	3,566 European ancestry individuals	4,680 European ancestry individuals	20q11.21		rs1474738-A	0.391273652	3E-10				Illumina [7417619] (imputed)	N
824	chr20	31381228	31381229	rs993419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs993419-A	0.526858	1E-18				Affymetrix, Illumina [23472807] (imputed)	N
824	chr20	31383352	31383353	rs910085	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.21	DNMT3B	rs910085-T	0.6128	3E-19		0.0163	[0.013-0.02] unit increase	Affymetrix [18391927] (imputed)	N
824	chr20	31383352	31383353	rs910085	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q11.21	DNMT3B	rs910085-T	0.5957	4E-8		0.1418	[0.091-0.192] mmHg decrease	Affymetrix [NR] (imputed)	N
824	chr20	31384879	31384880	rs6057648	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057648-A		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31385471	31385471	rs34902104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q11.21		rs34902104-CT	NR	5E-14		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
824	chr20	31387953	31387954	rs1997797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q11.21	DNMT3B	rs1997797-G	0.446677	2E-15		0.017712608	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
824	chr20	31387953	31387954	rs1997797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q11.21	NR	rs1997797-G	0.445711	4E-19		0.01702	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
824	chr20	31389517	31389518	rs2424929	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q11.21		rs2424929-G	0.42	1E-22		9.8	z score increase	Affymetrix [9061022] (imputed)	N
824	chr20	31392776	31392777	rs6058893	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.21	DNMT3B	rs6058893-T	0.4719	5E-8		0.0118	[0.0075-0.0161] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
824	chr20	31395476	31395477	rs6119286	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6119286-A		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31397398	31397399	rs146680938	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	20q11.21	DNMT3B	rs146680938-C	NR	8E-7		0.78	[0.47-1.09] unit decrease	Illumina [27700000] (imputed)	N
824	chr20	31410336	31410337	rs6057651	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057651-A		7E-6				Illumina [2373249] (imputed)	N
824	chr20	31410336	31410337	rs6057651	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057651-A		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31413015	31413015	rs3831804	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	20q11.21	MAPRE1	rs3831804-T	0.78	2E-9		0.00644	[0.0043-0.0085] unit increase	Affymetrix [at least 8002429] (imputed)	N
824	chr20	31419808	31419809	rs6057652	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057652-A		7E-6				Illumina [2373249] (imputed)	N
824	chr20	31419808	31419809	rs6057652	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057652-A		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31420756	31420757	rs853854	30566500	Day F	2018-12-19	PLoS Genet	Large-scale genome-wide meta-analysis of polycystic ovary syndrome suggests shared genetic architecture for different diagnosis criteria.	Polycystic ovary syndrome	10,074 European ancestry cases, 103,164 European ancestry controls	NA	20q11.21	MAPRE1	rs853854-T	0.5	2E-9		0.0975	[0.066-0.129] unit decrease	Illumina [> 10000000] (imputed)	N
824	chr20	31426948	31426949	rs79396740	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs79396740-?	NR	2E-9				Illumina [7760689] (imputed)	N
824	chr20	31429864	31429865	rs447749	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	20q11.21		rs447749-?	NR	5E-6		1.08278	[1.05-1.12]	NR [680312]	N
824	chr20	31429864	31429865	rs447749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q11.21	MAPRE1	rs447749-T	0.576783	1E-12		0.016437113	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
824	chr20	31437606	31437607	rs7270085	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs7270085-A		4E-6				Illumina [2373249] (imputed)	N
824	chr20	31437618	31437619	rs140911738	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	20q11.21	MAPRE1	rs140911738-G	NR	4E-7		0.509	[0.31-0.71] unit decrease	Illumina [27700000] (imputed)	N
824	chr20	31438953	31438954	rs4911268	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.21		rs4911268-?	NR	2E-12				NR [~ 8900000] (imputed)	N
824	chr20	31440227	31440228	rs6119294	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs6119294-?	NR	2E-21				NR [~ 8900000] (imputed)	N
824	chr20	31445146	31445147	rs6057659	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs6057659-A		5E-6				Illumina [2373249] (imputed)	N
824	chr20	31446857	31446858	rs8123073	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs8123073-A		5E-6				Illumina [2373249] (imputed)	N
824	chr20	31447367	31447368	rs17123726	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q11.21	NR	rs17123726-A		5E-6				Illumina [2373249] (imputed)	N
824	chr20	31448848	31448849	rs6120005	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	20q11.21	MAPRE1, SUN5	rs6120005-G	0.84	4E-13		0.0085	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
825	chr20	31470483	31470484	rs13038717	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.21	NR	rs13038717-G	0.542851	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
825	chr20	31471057	31471058	rs116976597	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.21	EFCAB8	rs116976597-T	0.9844	7E-6		0.1367	[0.077-0.196] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
825	chr20	31477980	31477981	rs11697690	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	20q11.21	NR	rs11697690-C	0.469	2E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10862568] (imputed)	N
825	chr20	31486205	31486206	rs6058948	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.21		rs6058948-?	NR	6E-6		1.05452	[1.03-1.08]	NR [685523]	N
825	chr20	31531543	31531544	rs13045180	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q11.21	intergenic	rs13045180-T	0.19	9E-6	(ESRD)	1.28	[1.15-1.43]	Affymetrix, Illumina [~ 2500000] (imputed)	N
825	chr20	31576645	31576646	rs11696806	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs11696806-?	NR	6E-10				Illumina [7760689] (imputed)	N
826	chr20	31607550	31607551	rs61734341	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	20q11.21	BPIL1	rs61734341-C	0.0598	1E-8		0.0285	[0.019-0.038] unit decrease	Illumina [~ 250000] (imputed)	N
826	chr20	31615437	31615438	rs71349703	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.21		rs71349703-?	NR	5E-9				NR [~ 8900000] (imputed)	N
826	chr20	31635645	31635646	rs115547111	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	20q11.21	NR	rs115547111-?	NR	6E-6		0.3771	[0.22-0.54] unit decrease	Illumina [at least 560000] (imputed)	N
826	chr20	31641289	31641290	rs127896	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q11.21	BPIFB3	rs127896-A	0.0684041	2E-12		0.14339527	[0.1-0.18] unit increase	Affymetrix [7260263] (imputed)	N
826	chr20	31647695	31647696	rs11697151	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs11697151-?	NR	4E-8				Illumina [7760689] (imputed)	N
826	chr20	31647695	31647696	rs11697151	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs11697151-?	NR	2E-9				Illumina [7760689] (imputed)	N
826	chr20	31647695	31647696	rs11697151	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q11.21	NR	rs11697151-?	NR	2E-8				Illumina [7760689] (imputed)	N
826	chr20	31672455	31672456	rs2424948	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.21		rs2424948-?	NR	5E-7		1.08659	[1.05-1.12]	NR [685523]	N
826	chr20	31685872	31685873	rs2424952	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.21	NR	rs2424952-T	NR	8E-13		1.2837547	[1.2-1.37]	Affymetrix [5734850] (imputed)	N
826	chr20	31688867	31688868	rs761931	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFB1	5,365 Icelandic ancestry individuals	NA	20q11.21		rs761931-G	0.4228	2E-77		0.348017	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
826	chr20	31693426	31693427	rs2424956	30377885	Fujimori S	2018-10-30	Dig Dis Sci	Bactericidal/Permeability-Increasing Fold-Containing Family B Member 4 May Be Associated with NSAID-Induced Enteropathy.	Non-steroidal anti-inflammatory drug-induced enteropathy	16 Japanese ancestry severe injury cases, 123 Japanese ancestry mild and no injury treated controls	NA	20q11.21	BPIFB4	rs2424955-C	0.143	1E-7		44.03	[NR]	Illumina [580461]	N
826	chr20	31694059	31694060	rs2424961	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.21	BPIFB1	rs2424961-T	0.579	4E-71	(BPI fold-containing family B member 1, BPIFB1.11246.3.3)	0.44	[0.4-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
826	chr20	31718652	31718653	rs6059101	20848476	Haritunians T	2010-11-01	Inflamm Bowel Dis	Genetic predictors of medically refractory ulcerative colitis.	Ulcerative colitis	324 European ancestry medically refractory ulcerative colitis cases, 537 European ancestry non-medically refractory ulcerative colitis cases, 2,601 European ancestry controls	NA	20q11.21	C20orf71, C20orf70	rs6059101-A	NR	4E-6	(Analysis II)			Illumina [313720]	N
827	chr20	31742113	31742114	rs141715080	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.21	BPIFA2	rs141715080-C	0.97328125	2E-8	(BPIFA2, 5695_5_3)	0.42871577	[0.28-0.58] unit increase	Illumina [> 1000000] (imputed)	N
827	chr20	31758365	31758366	rs536060099	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	20q11.21	NR	rs536060099-?	NR	1E-6		1.39192	[0.83-1.96] unit increase	NR [13958389] (imputed)	N
827	chr20	31760549	31760550	rs117186940	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q11.21	BPIFA2	rs117186940-T	0.075314	1E-12		0.03041068	[0.022-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
827	chr20	31760549	31760550	rs117186940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.21		rs117186940-?	NR	1E-300				NR [~ 8900000] (imputed)	N
827	chr20	31760549	31760550	rs117186940	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs117186940-T	NR	3E-104		0.345	[0.2-0.49] unit increase	Affymetrix [8351141] (imputed)	N
827	chr20	31768654	31768655	rs6120141	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	20q11.21	BPIFA2, C20orf70	rs6120141-T	0.0252	3E-6		5.0772	[NR] unit decrease	Illumina [1216189] (imputed)	N
827	chr20	31798436	31798437	rs17124372	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	20q11.21	BASE, PLUNC, BPIFA4P	rs17124372-T	0.0241	2E-6		5.1975	[NR] unit decrease	Illumina [1216189] (imputed)	N
827	chr20	31806587	31806588	rs17305657	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.21		rs17305657-?	NR	4E-12		1.12583	[1.09-1.16]	NR [685523]	N
827	chr20	31806587	31806588	rs17305657	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.21		rs17305657-?	NR	1E-8		1.0651	[1.04-1.09]	NR [688737]	N
827	chr20	31814100	31814101	rs1570032	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.21	NR	rs1570032-?	NR	1E-13				Affymetrix [NR]	N
827	chr20	31818703	31818704	rs6059171	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFB1	5,365 Icelandic ancestry individuals	NA	20q11.21		rs6059171-A	0.2479	7E-21		0.20778	[0.16-0.25] unit increase	Illumina [7506463] (imputed)	N
828	chr20	31850647	31850648	rs6141378	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.21	NR	rs6141378-A	0.258	1E-12	(BPI fold-containing family B member 1, BPIFB1.11246.3.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
828	chr20	31852007	31852008	rs1321419	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs1321419-?	NR	9E-12				NR [~ 8900000] (imputed)	N
828	chr20	31857405	31857406	rs982563	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	20q11.21	NR	rs982563-?	0.2337	7E-6		0.059082	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
828	chr20	31886245	31886246	rs4911315	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	20q11.21		rs4911315-A	0.105592	8E-7		1.0935	NR	Affymetrix [7846216] (imputed)	N
828	chr20	31891754	31891755	rs117258330	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFB1	5,365 Icelandic ancestry individuals	NA	20q11.21		rs117258330-C	0.01211	2E-31		1.02595	[0.85-1.2] unit decrease	Illumina [7506463] (imputed)	N
828	chr20	31891754	31891755	rs117258330	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.21	NR	rs117258330-C	0.01	7E-15	(BPI fold-containing family B member 1, BPIFB1.11246.3.3)	1.13	[0.84-1.42] unit decrease	Affymetrix [10572788] (imputed)	N
828	chr20	31894765	31894766	rs41311304	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPIFB1	5,365 Icelandic ancestry individuals	NA	20q11.21		rs41311304-T	0.05737	2E-21		0.382354	[0.3-0.46] unit decrease	Illumina [7506463] (imputed)	N
828	chr20	31920535	31920536	rs6087480	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.21		rs6087480-?	NR	2E-9				NR [~ 8900000] (imputed)	N
828	chr20	31925483	31925484	rs7263028	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.21	BPIFB1	rs7263028-C	0.8846875	8E-14	(BPIFB1, 11246_3_3)	0.29127184	[0.22-0.37] unit increase	Illumina [> 1000000] (imputed)	N
828	chr20	31925917	31925918	rs293738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.21	BPIFB5P	rs293738-C	NR	1E-14		0.0318097	[0.024-0.04] unit decrease	Affymetrix [323123] (imputed)	N
828	chr20	31926489	31926490	rs169797	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.21	CDK5RAP1	rs169797-A	0.7169	2E-7	(EA,men)	0.0297	[0.019-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
828	chr20	31926489	31926490	rs169797	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.21	CDK5RAP1	rs169797-A	0.7169	1E-9	(EA)	0.0244	[0.017-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
828	chr20	31932690	31932690	rs35852264	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20q11.21	RAP1, CDK5	rs35852264-C	0.294946	3E-9		0.0133459	[0.0089-0.0178] unit increase	NR [16516521] (imputed)	N
828	chr20	31939709	31939710	rs293710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.21	BPIFB9P	rs293710-C	NR	5E-8		0.0164655	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
828	chr20	31940257	31940258	rs293711	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	20q11.21	NR	rs293711-G	NR	8E-6		0.8517	NR	Illumina [at least 560000] (imputed)	N
828	chr20	31950844	31950845	rs291671	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.21		rs291671-?	NR	2E-27		1.19626	[1.16-1.23]	NR [685523]	N
828	chr20	31950844	31950845	rs291671	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.21		rs291671-?	NR	1E-17		1.09674	[1.08-1.12]	NR [688737]	N
828	chr20	31950844	31950845	rs291671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20q11.21	NR	rs291671-A	NR	3E-11		0.027	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
828	chr20	31950844	31950845	rs291671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.21	CDK5RAP1	rs291671-A	0.89159	1E-9		0.0226326	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
828	chr20	31950844	31950845	rs291671	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Hair color	9,126 European ancestry individuals	NA	20q11.21	ASIP	rs291671-G	0.10	2E-15	(red hair)	0.22	[NR] unit increase	Illumina [535076]	N
828	chr20	31966697	31966698	rs2065703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	20q11.21		rs2065703-T	NR	3E-8		0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
829	chr20	31983099	31983100	rs17124679	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.21	NR	rs17124679-?	NR	9E-17				Affymetrix [NR]	N
829	chr20	31988201	31988202	rs291695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.21	CDK5RAP1	rs291695-A	NR	3E-10		0.0313166	[0.022-0.041] unit decrease	Affymetrix [323123] (imputed)	N
829	chr20	32006876	32006877	rs147321446	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q11.21	NR	rs147321446-A	0.01394	4E-9	(AKR1C2)	0.9705	NR unit increase	Illumina [1671387] (imputed)	N
829	chr20	32009340	32009341	rs291688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	20q11.21		rs291688-C	NR	2E-9		0.0405	[0.027-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
829	chr20	32013913	32013914	rs141588480	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	20q11.21	SNTA1	rs141588480-?	0.95	6E-7				Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr20	32013913	32013914	rs141588480	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (1df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	20q11.21	SNTA1	rs141588480-?	0.95	2E-8		0.054	[0.034-0.074] unit increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
829	chr20	32021261	32021262	rs184024562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.21		rs184024562-?	NR	2E-9				NR [~ 8900000] (imputed)	N
829	chr20	32067944	32067945	rs17401449	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.21		rs17401449-G	NR	3E-20		1.3089005	NR	Affymetrix [7846216] (imputed)	N
829	chr20	32067944	32067945	rs17401449	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q11.21		rs17401449-G	NR	6E-17		1.3003901	[1.22-1.38]	Affymetrix [7846216] (imputed)	N
829	chr20	32067944	32067945	rs17401449	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.21	NR	rs17401449-A	NR	1E-14		1.2658292	[1.19-1.34]	Affymetrix [5734850] (imputed)	N
829	chr20	32067944	32067945	rs17401449	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.21	NR	rs17401449-G	NR	2E-192		0.439	[0.28-0.6] unit increase	Affymetrix [8351141] (imputed)	N
829	chr20	32077915	32077916	rs187449369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.21	CBFA2T2	rs187449369-A	NR	6E-28		0.0383934	[0.032-0.045] unit decrease	Affymetrix [323123] (imputed)	N
829	chr20	32077915	32077916	rs187449369	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.21	NR	rs187449369-A	0.266511	1E-10		0.0505228	[0.035-0.066] unit decrease	Affymetrix [17914406] (imputed)	N
830	chr20	32127670	32127671	rs2150165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.22	NR	rs2150165-T	0.135942	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
830	chr20	32130650	32130651	rs76771178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q11.22		rs76771178-?	NR	9E-13				NR [~ 8900000] (imputed)	N
830	chr20	32176932	32176933	rs147647111	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	CBFA2T2	rs147647111-A	0.9681	4E-6		0.0948	[0.054-0.135] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
830	chr20	32188141	32188142	rs149142833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q11.22		rs149142833-T	NR	3E-9		0.0187	[0.013-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
830	chr20	32188141	32188142	rs149142833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q11.22		rs149142833-T	NR	4E-15		0.0246	[0.019-0.031] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
830	chr20	32188141	32188142	rs149142833	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	CBFA2T2	rs149142833-T	NR	6E-17		0.0357144	[0.027-0.044] unit decrease	Affymetrix [323123] (imputed)	N
830	chr20	32188141	32188142	rs149142833	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q11.22	CBFA2T2	rs149142833-C	0.843641	3E-10		0.0174178	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
831	chr20	32263623	32263624	rs3213180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q11.22		rs3213180-C	NR	2E-10		0.0178	[0.012-0.023] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
831	chr20	32263623	32263624	rs3213180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q11.22		rs3213180-C	0.278217	3E-12		0.015787	[0.011-0.02] unit decrease	Illumina [13479295] (imputed)	N
831	chr20	32263623	32263624	rs3213180	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q11.22	E2F1	rs3213180-?	NR	5E-13		0.023266675	[0.017-0.03] unit decrease	Illumina [27896057] (imputed)	N
831	chr20	32274379	32274380	rs3213141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20q11.22	E2F1	rs3213141-A	NR	4E-8		0.0193689	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
831	chr20	32280828	32280829	rs6059412	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q11.22	E2F1	rs6059412-G	0.702594	1E-19		0.0187477	[0.015-0.023] unit decrease	NR [13737936] (imputed)	N
831	chr20	32280828	32280829	rs6059412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q11.22		rs6059412-?	NR	3E-22				NR [~ 8900000] (imputed)	N
831	chr20	32287916	32287917	rs548466113	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs548466113-?	NR	2E-17		0.0200328	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
831	chr20	32289721	32289722	rs113938611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.22		rs113938611-?	NR	9E-9				NR [~ 8900000] (imputed)	N
831	chr20	32296680	32296681	rs6057884	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q11.22	PXMP4	rs6057884-A	0.164	1E-6		0.018	unit decrease	Illumina [NR] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q11.22	NR	rs13042148-C	0.844638	9E-39		0.0143832	[0.012-0.017] unit increase	Affymetrix [16582909] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q11.22	NR	rs13042148-C	0.845319	2E-21		0.0156873	[0.012-0.019] unit increase	Affymetrix [16585854] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q11.22	NR	rs13042148-C	0.843925	6E-20		0.0134701	[0.01-0.017] unit increase	Affymetrix [16582621] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q11.22	NR	rs13042148-C	0.844638	1E-25		0.0132081	[0.011-0.016] unit increase	Affymetrix [16582965] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q11.22	NR	rs13042148-C	0.845319	3E-14		0.0144829	[0.011-0.018] unit increase	Affymetrix [16585866] (imputed)	N
831	chr20	32298285	32298286	rs13042148	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q11.22	NR	rs13042148-C	0.843925	1E-14		0.0124463	[0.0091-0.0158] unit increase	Affymetrix [16582614] (imputed)	N
831	chr20	32298285	32298286	rs13042148	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	20q11.22	CDK5RAP1	rs13042148-C	0.8463	7E-12		0.1674	[0.12-0.22] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
831	chr20	32300633	32300634	rs34879158	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.22	PXMP4	rs34879158-A	0.737	2E-63		0.0363	[0.032-0.041] unit increase	Affymetrix [18391927] (imputed)	N
831	chr20	32300633	32300634	rs34879158	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs34879158-C	0.26197	9E-13		0.0559388	[0.041-0.071] unit decrease	Affymetrix [17914406] (imputed)	N
831	chr20	32300633	32300634	rs34879158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs34879158-?	NR	3E-101				NR [~ 8900000] (imputed)	N
831	chr20	32300670	32300671	rs34587839	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q11.22		rs34587839-A	NR	1E-9		0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
831	chr20	32304652	32304653	rs1074683	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs1074683-?	NR	2E-6		0.03029047	[0.018-0.043] unit decrease	Illumina [34656550] (imputed)	N
831	chr20	32304652	32304653	rs1074683	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20q11.22	PXMP4	rs1074683-C	0.757	8E-38		0.044	[0.038-0.05] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
831	chr20	32304652	32304653	rs1074683	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	PXMP4	rs1074683-C	0.76	1E-14		1.21	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
831	chr20	32306729	32306730	rs181906823	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q11.22	NR	rs181906823-C	0.01394	4E-9	(AKR1C2)	0.9705	NR unit increase	Illumina [1671387] (imputed)	N
831	chr20	32308274	32308275	rs67611724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q11.22	NR	rs67611724-T	NR	3E-9		0.0196	[0.013-0.026] unit increase	Affymetrix [9000000] (imputed)	N
831	chr20	32308274	32308275	rs67611724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q11.22	NR	rs67611724-T	NR	7E-14		0.0261	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
831	chr20	32308274	32308275	rs67611724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	20q11.22	NR	rs67611724-T	NR	7E-13		0.0244	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
831	chr20	32308274	32308275	rs67611724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	20q11.22	NR	rs67611724-T	NR	1E-10		0.0214	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
831	chr20	32308274	32308275	rs67611724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	20q11.22	NR	rs67611724-T	NR	5E-16		0.0269	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
831	chr20	32333180	32333181	rs7274811	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ZNF341	rs7274811-T	NR	7E-16		0.0260132	[0.02-0.032] unit decrease	Affymetrix [321016] (imputed)	N
831	chr20	32333180	32333181	rs7274811	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs7274811-?	NR	6E-6		0.03003618	[0.017-0.043] unit decrease	Illumina [34656550] (imputed)	N
831	chr20	32333180	32333181	rs7274811	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q11.22	ZNF341	rs7274811-T	0.23	6E-22		0.041	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
831	chr20	32358742	32358743	rs111930714	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs111930714-G	NR	4E-15		1.2705625	[1.2-1.35]	Affymetrix [5734850] (imputed)	N
831	chr20	32358787	32358788	rs34633531	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ZNF341	rs34633531-T	NR	3E-10		0.0249749	[0.017-0.033] unit decrease	Affymetrix [321016] (imputed)	N
831	chr20	32360110	32360111	rs78382342	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs78382342-A	NR	1E-207		0.456	[0.3-0.62] unit increase	Affymetrix [8351141] (imputed)	N
831	chr20	32363536	32363537	rs12625495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.22	ZNF341	rs12625495-T	0.2454	1E-6		0.0381	[0.023-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
831	chr20	32363536	32363537	rs12625495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	ZNF341	rs12625495-T	0.2455	6E-11		0.0515	[0.036-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
831	chr20	32365468	32365469	rs6088300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	ZNF341	rs6088300-C	NR	3E-13		0.0235972	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
831	chr20	32373525	32373526	rs4911132	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ZNF341	rs4911132-G	NR	6E-13		0.0212797	[0.015-0.027] unit decrease	Affymetrix [321016] (imputed)	N
832	chr20	32376744	32376745	rs140105337	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	ZNF341, RP4-553F4.6	rs140105337-T	NR	2E-8		0.0537754	[0.035-0.072] unit increase	Affymetrix [323123] (imputed)	N
832	chr20	32398089	32398090	rs62209625	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	ZNF341-AS1	rs62209625-A	0.8246	1E-6		0.0431	[0.026-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
832	chr20	32418367	32418368	rs2747539	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	20q11.22	NR	rs2747539-?	NR	4E-6		3.389	[NR]	Illumina [4196861] (imputed)	N
832	chr20	32426841	32426842	rs6088316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs6088316-?	NR	8E-17		1.11813	[1.09-1.14]	NR [685523]	N
832	chr20	32426841	32426842	rs6088316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs6088316-?	NR	2E-6		1.16115	[1.1-1.22]	NR [674885]	N
832	chr20	32426841	32426842	rs6088316	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs6088316-?	NR	4E-6		1.0408	[1.02-1.06]	NR [688737]	N
832	chr20	32435977	32435978	rs7274168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	20q11.22		rs7274168-?	NR	6E-9				NR [~ 8900000] (imputed)	N
832	chr20	32458397	32458398	rs149389676	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.22		rs149389676-?	NR	3E-54				NR [~ 8900000] (imputed)	N
832	chr20	32459583	32459584	rs62209635	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	20q11.22	CHMP4B, RALY-AS1	rs62209635-?	NR	3E-7	(EA)	0.0674	[0.042-0.093] unit decrease	Illumina [7176022] (imputed)	N
832	chr20	32466218	32466219	rs181451002	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	20q11.22	CHMP4B	rs181451002-G	0.978772	3E-9		0.06287	[0.042-0.084] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
832	chr20	32467557	32467563	rs142564732	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls		NR	rs142564732-T	NR	2E-205		0.497	[0.32-0.67] unit increase	Affymetrix [8351141] (imputed)	N
832	chr20	32482385	32482386	rs736264	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.22		rs736264-T	NR	1E-8		1.1067	NR	Affymetrix [7846216] (imputed)	N
832	chr20	32482631	32482632	rs742614	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Stearic acid (18:0) levels	8,961 European ancestry individuals		20q11.22	CHMP4B	rs742614-A	NR	3E-7		0.095	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr20	32505657	32505658	rs62209647	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASIP	5,364 Icelandic ancestry individuals	NA	20q11.22		rs62209647-C	0.08327	8E-242		1.06374	[1-1.13] unit increase	Illumina [7506463] (imputed)	N
832	chr20	32505657	32505658	rs62209647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	TPM3P2	rs62209647-C	NR	5E-10		0.0324949	[0.022-0.043] unit decrease	Affymetrix [323123] (imputed)	N
832	chr20	32505657	32505658	rs62209647	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	20q11.22	TPM3P2	rs62209647-C	0.059286	9E-30		1.32	[1.27-1.37]	Affymetrix, Illumina [up to 9061544] (imputed)	N
832	chr20	32505657	32505658	rs62209647	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs62209647-G	NR	1E-15		1.2676954	[1.2-1.34]	Affymetrix [5734850] (imputed)	N
833	chr20	32508109	32508110	rs6088347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	20q11.22		rs6088347-?	NR	5E-13				NR [~ 8900000] (imputed)	N
833	chr20	32525369	32525370	rs2377955	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q11.22	NR	rs2377955-A	0.3579	4E-9				NR [9056863] (imputed)	N
833	chr20	32529303	32529304	rs6087546	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	20q11.22	NR	rs6087546-A	0.1888	2E-6		0.6455	[0.37-0.92] unit increase	Illumina [at least 567677] (imputed)	N
833	chr20	32536363	32536364	rs973409	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs973409-?	NR	2E-10		1.07375	[1.05-1.1]	NR [685523]	N
833	chr20	32538390	32538391	rs62211989	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	20q11.22	RALY	rs62211989-G	0.902017	3E-14		1.0587969	NR	Affymetrix [~ 9600000] (imputed)	N
833	chr20	32538390	32538391	rs62211989	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs62211989-C	0.0979668	3E-13		0.0865752	[0.063-0.11] unit decrease	Affymetrix [17914406] (imputed)	N
833	chr20	32542813	32542814	rs13041173	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q11.22	RALY	rs13041173-A	0.658499	2E-9		0.0120958	[0.0081-0.016] unit increase	Affymetrix [NR] (imputed)	N
833	chr20	32553094	32553095	rs4911382	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q11.22	RALY	rs4911382-C	0.414559	3E-9		0.00831839	[0.0056-0.0111] unit decrease	Affymetrix [12370749]	N
833	chr20	32553094	32553095	rs4911382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q11.22		rs4911382-?	NR	8E-13				NR [~ 8900000] (imputed)	N
833	chr20	32556571	32556572	rs6142067	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.22	NR	rs6142067-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
833	chr20	32556571	32556572	rs6142067	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q11.22	NA	rs6142067-T	0.6021	4E-13		0.0126	[0.0093-0.0159] unit increase	NR [~ 27400000] (imputed)	N
833	chr20	32556776	32556777	rs6059594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.22	NR	rs6059594-G	0.962818623864648	7E-6	(IGP72)	0.4826	[0.27-0.69] unit decrease	Illumina [~ 2500000] (imputed)	N
833	chr20	32556776	32556777	rs6059594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.22	NR	rs6059594-G	0.962797338540276	9E-6	(IGP66)	0.4792	[0.27-0.69] unit increase	Illumina [~ 2500000] (imputed)	N
833	chr20	32556776	32556777	rs6059594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.22	NR	rs6059594-G	0.962797338540276	5E-6	(IGP70)	0.4906	[0.28-0.7] unit increase	Illumina [~ 2500000] (imputed)	N
833	chr20	32556776	32556777	rs6059594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.22	NR	rs6059594-G	0.962797338540276	4E-6	(IGP71)	0.4964	[0.29-0.71] unit increase	Illumina [~ 2500000] (imputed)	N
833	chr20	32556776	32556777	rs6059594	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.22	NR	rs6059594-G	0.962780757212823	3E-6	(IGP62)	0.4999	[0.29-0.71] unit decrease	Illumina [~ 2500000] (imputed)	N
833	chr20	32557171	32557172	rs6142068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q11.22		rs6142068-?	NR	1E-9				NR [~ 8900000] (imputed)	N
833	chr20	32588094	32588095	rs2284378	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs2284378-?	NR	2E-7		1.0379	[1.02-1.05]	NR [688737]	N
833	chr20	32588094	32588095	rs2284378	22976474	Siddiq A	2012-09-13	Hum Mol Genet	A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.	Breast cancer	3,666 European ancestry cases, 28,864 European ancestry controls, 1,004 African American cases, 2,744 African American controls	562 European ancestry cases, 6,410 European ancestry controls, 84 Japanese ancestry cases, 830 Japanese ancestry controls, 300 Latino cases, 1,164 Latino controls	20q11.22	RALY, EIF2S2, ASIP	rs2284378-T	0.31	1E-8		1.16	[1.10-1.22]	Illumina [2608509] (imputed)	N
833	chr20	32589140	32589141	rs8121978	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q11.22	NR	rs8121978-?	NR	6E-6		4.532	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
833	chr20	32589807	32589808	rs2300206	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	20q11.22	RALY	rs2300206-C	NR	6E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
833	chr20	32589807	32589808	rs2300206	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	20q11.22	RALY	rs2300206-G	NR	2E-8		1.1111112	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
833	chr20	32596703	32596704	rs2268078	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q11.22	NR	rs2268078-G	0.3447	2E-15		0.0387	[0.029-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
833	chr20	32596703	32596704	rs2268078	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q11.22	RALY	rs2268078-A	0.6572	2E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
833	chr20	32606734	32606735	rs13043392	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	RALY	rs13043392-C	NR	5E-11		0.0209928	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
833	chr20	32610400	32610401	rs1555075	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	20q11.22	RALY	rs1555075-T	0.3145	5E-10		6.215	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
834	chr20	32644395	32644396	rs2284386	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs2284386-?	NR	2E-9		1.06988	[1.05-1.09]	NR [685523]	N
834	chr20	32652802	32652803	rs140035275	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	20q11.22	RALY	rs140035275-T	0.016	7E-6		2.44	[1.59-3.75]	Affymetrix [up to 27494467] (imputed)	N
834	chr20	32654816	32654817	rs79078695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	RALY	rs79078695-G	NR	5E-8		0.0226234	[0.015-0.031] unit increase	Affymetrix [321016] (imputed)	N
834	chr20	32654816	32654817	rs79078695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	RALY	rs79078695-G	NR	2E-10		0.0285464	[0.02-0.037] unit increase	Affymetrix [323123] (imputed)	N
834	chr20	32654816	32654817	rs79078695	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.22	RALY	rs79078695-T	0.8778	4E-6		0.0492	[0.028-0.07] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
834	chr20	32654817	32654818	rs79027916	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20q11.22	RALY	rs79027916-A	0.121	8E-8		0.0025	[0.0013-0.0037] unit decrease	Affymetrix [NR] (imputed)	N
834	chr20	32655690	32655691	rs78116891	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs78116891-?	NR	6E-25				NR [~ 8900000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	20q11.22		rs6059655-G	NR	4E-60		0.2701	[0.24-0.3] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
834	chr20	32665747	32665748	rs6059655	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	20q11.22		rs6059655-G	0.9214856	1E-12		0.83		Affymetrix [15611556] (imputed)	N
834	chr20	32665747	32665748	rs6059655	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q11.22	RALY	rs6059655-A	0.100688	3E-45		0.23675537	[0.2-0.27] unit increase	Affymetrix [7260263] (imputed)	N
834	chr20	32665747	32665748	rs6059655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q11.22	RALY	rs6059655-G	0.896091	1E-11		0.025164466	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
834	chr20	32665747	32665748	rs6059655	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.22		rs6059655-A	NR	3E-38		1.4116	NR	Affymetrix [7846216] (imputed)	N
834	chr20	32665747	32665748	rs6059655	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	20q11.22	RALY	rs6059655-A	0.060964	5E-62				Affymetrix, Illumina [NR] (imputed)	N
834	chr20	32665747	32665748	rs6059655	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	20q11.22	RALY	rs6059655-A	0.061	5E-98		1.4117	NR	Affymetrix, Illumina [NR] (imputed)	N
834	chr20	32665747	32665748	rs6059655	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	20q11.22	RALY	rs6059655-A	0.077	8E-40		0.25	[0.21-0.29] unit increase	NR [13607369] (imputed)	N
834	chr20	32665747	32665748	rs6059655	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs6059655-G	0.897447	2E-13		0.0840553	[0.062-0.106] unit increase	Affymetrix [17914406] (imputed)	N
834	chr20	32665747	32665748	rs6059655	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20q11.22	RALY	rs6059655-A	0.104674	5E-78		1.2820514	[1.25-1.3]	Affymetrix [7600000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	20q11.22	RALY	rs6059655-A	0.060964	3E-70		1.27	[1.24-1.29]	Affymetrix, Illumina [up to 9061544] (imputed)	N
834	chr20	32665747	32665748	rs6059655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	20q11.22		rs6059655-?	NR	1E-269				NR [~ 8900000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	20q11.22	RALY	rs6059655-A	0.1059	2E-308		1.879	NR	Affymetrix [9154080] (imputed)	N
834	chr20	32665747	32665748	rs6059655	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	20q11.22	RALY	rs6059655-A	0.1059	8E-149		1.354	NR	Affymetrix [9154080] (imputed)	N
834	chr20	32665747	32665748	rs6059655	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	RALY, ASIP	rs6059655-G	NR	8E-17		1.27	[1.20-1.35]	Affymetrix [5734850] (imputed)	N
834	chr20	32665747	32665748	rs6059655	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	RALY, ASIP	rs6059655-A	NR	1E-315		0.527	[0.36-0.69] unit increase	Affymetrix [8351141] (imputed)	N
834	chr20	32665747	32665748	rs6059655	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	20q11.22	RALY	rs6059655-A	0.1	1E-100		0.182	[0.17-0.19] unit decrease	Affymetrix, Illumina [at least 560000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	20q11.22	CHMP4B	rs6059655-A	0.0985599	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
834	chr20	32665747	32665748	rs6059655	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	20q11.22	RALY, ASIP	rs6059655-A	0.07	5E-23		1.38	[1.29-1.47]	Illumina [at least 560000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	20q11.22	RALY, EIF252, ASIP, AHCY, ITCH	rs6059655-G	0.92678	1E-19		1.6321203	[1.47-1.82]	Illumina [8966411] (imputed)	N
834	chr20	32665747	32665748	rs6059655	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	20q11.22	RALY	rs6059655-A	0.07	3E-26		1.24	[NR]	Illumina [at least 560000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	20q11.22	RALY-ASIP	rs6059655-A	0.07	3E-14		1.27		Affymetrix, Illumina [at least 560000] (imputed)	N
834	chr20	32665747	32665748	rs6059655	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	20q11.22	RALY	rs6059655-A	0.08	9E-21		1.32	[1.24-1.39]	Affymetrix [9610468] (imputed)	N
834	chr20	32665747	32665748	rs6059655	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin sensitivity to sun	2,668 European ancestry individuals	NA	20q11.22	ASIP, RALY	rs6059655-A	0.0959999999999999	1E-7		0.22	[0.30232-0.13768] unit decrease	Illumina [NR] (imputed)	N
834	chr20	32665747	32665748	rs6059655	25963972	Liu F	2015-05-12	Hum Genet	Genetics of skin color variation in Europeans: genome-wide association studies with functional follow-up.	Skin colour saturation	5,857 European ancestry individuals	NA	20q11.22	ASIP, RALY	rs6059655-A	0.0785385009390473	5E-13		0.01310935	[NR] unit decrease	Illumina [11155022] (imputed)	N
834	chr20	32665747	32665748	rs6059655	25705849	Jacobs LC	2015-02-23	J Invest Dermatol	A Genome-Wide Association Study Identifies the Skin Color Genes IRF4, MC1R, ASIP, and BNC2 Influencing Facial Pigmented Spots.	Facial pigmentation	2,844 European ancestry individuals	NA	20q11.22	ASIP, RALY	rs6059655-A	0.08	3E-9		14.58	[10.05-19.11] unit increase	Illumina [6846125] (imputed)	N
834	chr20	32674966	32674967	rs4911405	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	20q11.22	NA	rs4911405-T		3E-8		0.0109293	[0.0071-0.0148] unit increase	Illumina [13288253] (imputed)	N
834	chr20	32675635	32675636	rs6120513	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs6120513-?	NR	9E-6		1.12115	[1.07-1.17]	NR [674885]	N
834	chr20	32675726	32675727	rs6059662	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q11.22	NR	rs6059662-G	0.6963	2E-17		0.0369	[0.028-0.045] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
834	chr20	32675726	32675727	rs6059662	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	20q11.22	EIF2S2	rs6059662-A	0.336824454484242	2E-8		0.0446	[0.029-0.06] unit decrease	NR [5035015] (imputed)	N
834	chr20	32677027	32677053	rs16434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q11.22		rs16434-T	NR	3E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
834	chr20	32679575	32679575	rs370844658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q11.22		rs370844658-ATT	NR	3E-8		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
834	chr20	32686657	32686658	rs6142096	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20q11.22	NR	rs6142096-A	NR	2E-16		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
834	chr20	32698274	32698275	rs6087557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.22	NR	rs6087557-C	0.665511	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
834	chr20	32700565	32700566	rs4911408	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q11.22		rs4911408-G	0.29	7E-11		6.52	z score increase	Affymetrix [9061022] (imputed)	N
834	chr20	32704626	32704627	rs6142102	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	20q11.22	EIF2S2, ASIP	rs6142102-G	NR	2E-7		2.21	[1.38-3.05] unit increase	Affymetrix [14000000] (imputed)	N
834	chr20	32714727	32714728	rs2378078	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q11.22	CHMP4B, RALY, EIF2S2	rs2378078-?		5E-19				Affymetrix, Illumina [NR] (imputed)	N
834	chr20	32719796	32719797	rs11907546	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	20q11.22	Intergenic	rs11907546-T	NR	3E-6	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
834	chr20	32719796	32719797	rs11907546	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	20q11.22	Intergenic	rs11907546-C	NR	3E-9		1.1111112	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
834	chr20	32721583	32721584	rs35595751	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	20q11.22	EIF2S2	rs35595751-T	0.327	3E-10		0.375	[0.26-0.49] unit decrease	Affymetrix [NR] (imputed)	N
834	chr20	32729443	32729444	rs4911414	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs4911414-?	NR	1E-6		1.03516	[1.02-1.05]	NR [688737]	N
834	chr20	32729443	32729444	rs4911414	23548203	Zhang M	2013-04-01	Hum Mol Genet	Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans.	Tanning	9,678 European ancestry individuals		20q11.22	ASIP	rs4911414-G	NR	4E-9		0.07	[0.050-0.090] unit decrease	Affymetrix, Illumina [7588169] (imputed)	N
834	chr20	32737600	32737601	rs115786578	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	20q11.22	Intergenic	rs115786578-A	NR	6E-7	(between families)	4.992	unit increase	Affymetrix [up to 15107142] (imputed)	N
834	chr20	32752090	32752091	rs138420028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.22		rs138420028-?	NR	2E-23				NR [~ 8900000] (imputed)	N
835	chr20	32783826	32783827	rs6087561	33119750	Vergara C	2020-10-29	J Infect Dis	A multi-ancestry sex stratified genome-wide association study of spontaneous clearance of hepatitis C virus.	Hepatitis C (spontaneous viral clearance)	239 African ancestry male cases, 1,184 African ancestry male controls, 206 African ancestry female cases, 572 African ancestry female controls, 489 European ancestry male cases, 703 European ancestry male controls, 212 European ancestry female cases, 332 European ancestry female controls, 91 Hispanic male cases, 197 Hispanic male controls, 82 Hispanic female cases, 116 Hispanic female controls	NA	20q11.22	NR	rs6087561-C	0.12	6E-7	(male)	1.6	[NR]	Illumina [5730693] (imputed)	N
835	chr20	32819223	32819225	rs565102642	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.22	ASIP	rs565102642-A	0.908	1E-136	(Agouti-signaling protein, ASIP.5676.54.3)	0.99	[0.91-1.07] unit decrease	Affymetrix [10572788] (imputed)	N
835	chr20	32847710	32847711	rs6059743	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs6059743-?	NR	1E-10		0.931844	[0.91-0.95]	NR [685523]	N
835	chr20	32847766	32847767	rs819135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q11.22		rs819135-?	NR	1E-13				NR [~ 8900000] (imputed)	N
835	chr20	32847766	32847767	rs819135	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs819135-?	NR	1E-21		0.0198145	[0.016-0.024] unit increase	Affymetrix [20259828] (imputed)	N
835	chr20	32877169	32877170	rs150653367	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs150653367-?	NR	1E-20				NR [~ 8900000] (imputed)	N
836	chr20	32903003	32903004	rs78836409	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	AHCY	rs78836409-A	0.053	1E-6		0.0838	[0.05-0.118] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
836	chr20	32903903	32903904	rs6142137	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q11.22	AHCY	rs6142137-T	0.573652	2E-11		0.0140858	[0.01-0.0182] unit decrease	NR [13737936] (imputed)	N
836	chr20	32907848	32907849	rs819131	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	20q11.22	AHCY	rs819131-G	NR	2E-9		0.0155457	[0.01-0.021] unit increase	Affymetrix [10061374] (imputed)	N
836	chr20	32907848	32907849	rs819131	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs819131-?	NR	8E-7		0.0979	[0.059-0.137] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
836	chr20	32912090	32912091	rs6087571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	AHCY	rs6087571-G	NR	2E-14		0.0346267	[0.026-0.043] unit increase	Affymetrix [323123] (imputed)	N
836	chr20	32913533	32913534	rs6088466	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q11.22	NR	rs6088466-A	0.303293	4E-16		0.0272816	[0.021-0.034] unit decrease	NR [19129689] (imputed)	N
836	chr20	32915753	32915754	rs819140	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q11.22	AHCY	rs819140-A	0.491357	2E-19		0.00344061	[0.0027-0.0042] unit increase	Affymetrix [13995440] (imputed)	N
836	chr20	32952124	32952125	rs12624640	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q11.22		rs12624640-A	NR	6E-16		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
836	chr20	32952527	32952528	rs8184730	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs8184730-A	0.389892	3E-10		0.0708535	[0.049-0.093] unit decrease	Affymetrix [21375087] (imputed)	N
836	chr20	32953343	32953344	rs6142147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q11.22		rs6142147-?	NR	5E-9				NR [~ 8900000] (imputed)	N
836	chr20	32958468	32958468	rs539218700	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs539218700-TCA	0.339291	2E-11		0.0775191	[0.054-0.101] unit decrease	Affymetrix [21375087] (imputed)	N
836	chr20	32971168	32971168	rs749761903	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q11.22	NR	rs749761903-A	0.44652000000000003	5E-11		0.00723113	[0.0048-0.0096] unit increase	Affymetrix [16582621] (imputed)	N
836	chr20	32971168	32971168	rs749761903	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q11.22	NR	rs749761903-A	0.44652000000000003	4E-10		0.0075029	[0.0049-0.0101] unit increase	Affymetrix [16582614] (imputed)	N
836	chr20	32985154	32985155	rs6087579	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q11.22	ITCH	rs6087579-A	0.4769	1E-35		0.0028	[0.0022-0.0034] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
836	chr20	32987686	32987687	rs62212171	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs62212171-C	0.141858	4E-18		0.0839452	[0.065-0.103] unit decrease	Affymetrix [17914406] (imputed)	N
836	chr20	32987686	32987687	rs62212171	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.22	ASIP	rs62212171-T	0.89015625	1E-97	(ASIP, 5676_54_3)	0.81405264	[0.74-0.89] unit decrease	Illumina [> 1000000] (imputed)	N
836	chr20	32987686	32987687	rs62212171	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q11.22	NR	rs62212171-T	NR	1E-9		6.048	z score decrease	Affymetrix [10847151] (imputed)	N
836	chr20	32987686	32987687	rs62212171	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	20q11.22	NR	rs62212171-T	0.137405	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
836	chr20	32987686	32987687	rs62212171	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	20q11.22	PXMP4	rs62212171-T	0.137405	3E-10		6.31	z score decrease	NR [10847151] (imputed)	N
836	chr20	32994628	32994629	rs62212173	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	20q11.22	NR	rs62212173-T	0.138126	1E-9		6.08	z score increase	NR [~ 10847151] (imputed)	N
836	chr20	33005509	33005509	rs759049867	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs759049867-C	0.232171	1E-11		0.0809015	[0.058-0.104] unit decrease	Affymetrix [21375087] (imputed)	N
836	chr20	33020956	33020957	rs13044413	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs13044413-?	NR	8E-23		0.0198509	[0.016-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
836	chr20	33020956	33020957	rs13044413	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q11.22	ITCH	rs13044413-A	0.562225	5E-10	(men)	0.0317443	[0.022-0.042] unit decrease	NR [17166351] (imputed)	N
836	chr20	33020956	33020957	rs13044413	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q11.22	ITCH	rs13044413-A	0.561168	2E-14		0.026206	[0.02-0.033] unit decrease	NR [17166351] (imputed)	N
836	chr20	33020956	33020957	rs13044413	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q11.22	ITCH	rs13044413-A	0.560246	2E-6	(women)	0.022708	[0.014-0.032] unit decrease	NR [17166351] (imputed)	N
837	chr20	33036481	33036482	rs6059844	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	20q11.22	AHCY, ITCH, DYNLRB1, MAP1LC3A, PIGU, NCOA6, TP53INP2	rs6059844-?	NR	7E-9		0.0030323	[-0.00175-0.00782] unit increase	Affymetrix [25921788] (imputed)	N
837	chr20	33036481	33036482	rs6059844	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	20q11.22	AHCY, ITCH, DYNLRB1, MAP1LC3A, PIGU, NCOA6, TP53INP2	rs6059844-?	NR	7E-9		0.0140471	[0.0093-0.0188] unit decrease	Affymetrix [25921788] (imputed)	N
837	chr20	33036481	33036482	rs6059844	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q11.22		rs6059844-?	NR	3E-12				NR [~ 8900000] (imputed)	N
837	chr20	33045091	33045092	rs77385328	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs77385328-?	NR	6E-7		0.1103	[0.067-0.154] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
837	chr20	33058226	33058226	rs148075685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q11.22	NR	rs148075685-A	0.528785	5E-24		0.00797682	[0.0063-0.0097] unit increase	Affymetrix [16582909] (imputed)	N
837	chr20	33058226	33058226	rs148075685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q11.22	NR	rs148075685-A	0.528785	2E-20		0.00856012	[0.0067-0.0104] unit increase	Affymetrix [16582965] (imputed)	N
837	chr20	33060177	33060177	rs755509649	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.22	ITCH	rs755509649-T	0.1588	7E-13		0.026	[0.019-0.033] unit decrease	Affymetrix [18391927] (imputed)	N
837	chr20	33074606	33074607	rs117075207	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ITCH	rs117075207-A	NR	7E-9		0.0336272	[0.022-0.045] unit increase	Affymetrix [321016] (imputed)	N
837	chr20	33074817	33074817	rs565653815	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs565653815-GTT	0.42154	2E-13		0.0740741	[0.054-0.094] unit increase	Affymetrix [21375087] (imputed)	N
837	chr20	33095094	33095095	rs6058067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q11.22	NR	rs6058067-G	0.305065	4E-15		0.00944516	[0.0068-0.0121] unit increase	Affymetrix [16585854] (imputed)	N
837	chr20	33095094	33095095	rs6058067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q11.22	NR	rs6058067-G	0.305065	1E-10		0.00930874	[0.0063-0.0124] unit increase	Affymetrix [16585866] (imputed)	N
837	chr20	33104458	33104459	rs185511771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs185511771-?	NR	3E-8				NR [~ 8900000] (imputed)	N
837	chr20	33121941	33121942	rs6141479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q11.22		rs6141479-C	NR	2E-10		0.0146	[0.01-0.019] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
837	chr20	33121941	33121942	rs6141479	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20q11.22	DYNLRB1	rs6141479-C	0.1995	2E-11		0.1524	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
837	chr20	33132158	33132159	rs6059908	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	MAP1LC3A	rs6059908-T	NR	4E-8		0.0210387	[0.014-0.029] unit decrease	Affymetrix [323123] (imputed)	N
837	chr20	33132363	33132364	rs6088520	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	MAP1LC3A	rs6088520-T	NR	5E-9		0.0179823	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
837	chr20	33133183	33133184	rs6088521	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	20q11.22	DYNLRB1, MAP1LC3A	rs6088521-C	0.48	1E-18		8.79	z-score increase	Affymetrix [4312306] (imputed)	N
837	chr20	33142822	33142823	rs6058078	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	20q11.22	PIGU	rs6058078-C	0.4853	3E-8		0.011995146	[0.0077-0.0162] unit decrease	Affymetrix [11514654] (imputed)	N
837	chr20	33151428	33151428	rs535726383	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs535726383-TG	0.348213	1E-11		0.077114	[0.055-0.099] unit increase	Affymetrix [21375087] (imputed)	N
837	chr20	33156741	33156742	rs6088528	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q11.22	PIGU	rs6088528-A	0.5018	2E-37		0.0033	[0.0027-0.0039] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
837	chr20	33157216	33157217	rs6087600	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q11.22	NR	rs6087600-C	0.498	5E-8		0.0060548	[0.0039-0.0082] unit decrease	NR [9732723] (imputed)	N
838	chr20	33164514	33164515	rs2424995	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	20q11.22	PIGU	rs2424995-A	0.09844	1E-65		1.515	NR	Affymetrix [9154080] (imputed)	N
838	chr20	33171771	33171772	rs910873	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs910873-?	NR	4E-37		1.23363	[1.2-1.27]	NR [685523]	N
838	chr20	33171771	33171772	rs910873	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs910873-?	NR	1E-13		1.32309	[1.25-1.4]	NR [674885]	N
838	chr20	33171771	33171772	rs910873	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs910873-?	NR	1E-16		1.09511	[1.07-1.12]	NR [688737]	N
838	chr20	33171771	33171772	rs910873	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	20q11.22	PIGU	rs910873-A	0.08	1E-15		1.75	[NR]	Illumina [at least 560000] (imputed)	N
838	chr20	33171771	33171772	rs910873	18488026	Brown KM	2008-05-18	Nat Genet	Common sequence variants on 20q11.22 confer melanoma susceptibility.	Melanoma	864 European ancestry cases, 864 European ancestry controls	1,230 European ancestry cases, 1,251 European ancestry controls	20q11.22	CDC91L1	rs910873-T	0.09	1E-15		1.75	[1.53-2.01]	Illumina [535150]	N
838	chr20	33175465	33175466	rs6059932	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	20q11.22	PIGU	rs6059932-?	NR	1E-9				NR [1800000]	N
838	chr20	33180151	33180152	rs17305573	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	20q11.22	PIGU	rs17305573-T	0.932969	8E-397				Affymetrix, Illumina [NR] (imputed)	N
838	chr20	33187129	33187130	rs6059938	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.22	PIGU	rs6059938-A	0.4912	4E-6		0.0293	[0.017-0.042] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
838	chr20	33193312	33193313	rs34204895	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	20q11.22	NR	rs34204895-T	NR	2E-10		0.0268	[0.019-0.035] unit increase	Affymetrix [9000000] (imputed)	N
838	chr20	33197488	33197489	rs6087607	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	20q11.22	NR	rs6087607-A	0.176741	2E-10		6.38	z score increase	NR [~ 10847151] (imputed)	N
838	chr20	33205010	33205011	rs7261964	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.22	PIGU	rs7261964-T	0.8423	2E-7		0.046	[0.029-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
838	chr20	33212054	33212055	rs6142206	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	PIGU	rs6142206-A	NR	8E-10		0.0190968	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
838	chr20	33212054	33212055	rs6142206	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20q11.22	NR	rs6142206-A	0.42	2E-17		0.0157	[0.012-0.019] unit increase	NR [NR]	N
838	chr20	33212054	33212055	rs6142206	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	20q11.22	NR	rs6142206-A	0.421119	5E-11		0.0133602	[0.0094-0.0173] unit increase	Affymetrix [16583148] (imputed)	N
838	chr20	33213195	33213196	rs6058093	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q11.22	ITCH, DYNLRB1, MAP1LC3A, PIGU, TP53INP2	rs6058093-C	0.4942	3E-7		1.05	[1.03-1.06]	Affymetrix, Illumina [16900397] (imputed)	N
838	chr20	33213195	33213196	rs6058093	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		20q11.22	TP53INP2	rs6058093-A	NR	2E-13		0.0074	[0.0054-0.0094] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
838	chr20	33219834	33219835	rs62213589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	PIGU	rs62213589-C	NR	2E-11		0.0302604	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
838	chr20	33219834	33219835	rs62213589	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs62213589-C	0.134001	6E-18		0.0863775	[0.067-0.106] unit decrease	Affymetrix [17914406] (imputed)	N
838	chr20	33219834	33219835	rs62213589	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	20q11.22	NR	rs62213589-A	0.129751	2E-9		5.98	z score decrease	NR [10847151] (imputed)	N
838	chr20	33220983	33220984	rs6142209	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q11.22	NR	rs6142209-C	NR	5E-12		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
838	chr20	33220983	33220984	rs6142209	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6142209-C	NR	3E-19		0.0228	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
838	chr20	33220983	33220984	rs6142209	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6142209-C	NR	3E-19		0.0228	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
838	chr20	33220983	33220984	rs6142209	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q11.22	NR	rs6142209-C	NR	1E-10		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
838	chr20	33220983	33220984	rs6142209	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q11.22	NR	rs6142209-C	NR	4E-10		0.0166	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
838	chr20	33226490	33226491	rs6088552	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q11.22	PIGU	rs6088552-G	0.37	7E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
838	chr20	33226490	33226491	rs6088552	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q11.22	PIGU	rs6088552-G	0.37	9E-6	(men)	0.022	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
838	chr20	33236695	33236696	rs56238684	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.22		rs56238684-C	NR	2E-33		1.3885033	NR	Affymetrix [7846216] (imputed)	N
838	chr20	33236695	33236696	rs56238684	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	20q11.22	ASIP	rs56238684-?	NR	5E-13				Affymetrix, Illumina [7850345] (imputed)	N
838	chr20	33236695	33236696	rs56238684	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs56238684-G	NR	8E-16		1.2723489	[1.2-1.35]	Affymetrix [5734850] (imputed)	N
838	chr20	33236695	33236696	rs56238684	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs56238684-C	NR	1E-287		0.517	[0.35-0.69] unit increase	Affymetrix [8351141] (imputed)	N
838	chr20	33238980	33238981	rs6087613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	PIGU	rs6087613-A	NR	1E-13		0.0320896	[0.024-0.041] unit increase	Affymetrix [321016] (imputed)	N
838	chr20	33238980	33238981	rs6087613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs6087613-?	NR	8E-91				NR [~ 8900000] (imputed)	N
838	chr20	33242808	33242808	rs571781683	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs571781683-CA	0.562805	3E-10		0.0682615	[0.047-0.089] unit increase	Affymetrix [21375087] (imputed)	N
838	chr20	33254328	33254329	rs6059973	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	20q11.22		rs6059973-A	0.504528	2E-13		0.026391	[0.019-0.033] unit decrease	NR [11722792] (imputed)	N
838	chr20	33273402	33273403	rs6088575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.22	NR	rs6088575-G	0.39815	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
838	chr20	33278100	33278101	rs6059988	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs6059988-T	NR	2E-8		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
838	chr20	33282678	33282679	rs145885479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	NCOA6	rs145885479-A	NR	4E-9		0.0525211	[0.035-0.07] unit increase	Affymetrix [323123] (imputed)	N
838	chr20	33283406	33283406	rs374704114	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs374704114-C	0.331714	2E-8		0.0663472	[0.044-0.089] unit increase	Affymetrix [21375087] (imputed)	N
838	chr20	33283443	33283444	rs2378253	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q11.22	NR	rs2378253-G	0.549453	1E-8		0.0107417	[0.007-0.0144] unit increase	NR [NR]	N
838	chr20	33285052	33285053	rs6088580	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	20q11.22	TP53INP2	rs6088580-C	0.47	2E-9	(EA)	0.0049	[0.0033-0.0065] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
838	chr20	33287077	33287078	rs13044899	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs13044899-?	NR	4E-9		0.0599	[0.04-0.08] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
838	chr20	33287077	33287078	rs13044899	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	NCOA6	rs13044899-A	0.4434	1E-10		0.0423	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
838	chr20	33287781	33287782	rs6119510	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20q11.22	TP53INP2	rs6119510-T	0.5959	3E-9		0.023095	[0.015-0.031] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
838	chr20	33289224	33289225	rs2378255	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.22	NR	rs2378255-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
839	chr20	33313565	33313566	rs6088590	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	20q11.22	NCOA6	rs6088590-T	0.6139	2E-9		0.0338	[0.023-0.045] unit decrease	NR [8041861] (imputed)	N
839	chr20	33317879	33317880	rs11167243	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	20q11.22		rs11167243-G	NR	9E-9		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
839	chr20	33320570	33320571	rs45465702	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q11.22	NR	rs45465702-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
839	chr20	33351889	33351890	rs11475245	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q11.22	NR	rs11475245-A	NR	4E-9		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
839	chr20	33355045	33355046	rs4911442	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs4911442-?	NR	1E-25		1.16739	[1.14-1.2]	NR [685523]	N
839	chr20	33355045	33355046	rs4911442	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs4911442-?	NR	2E-9		1.22821	[1.16-1.3]	NR [674885]	N
839	chr20	33355045	33355046	rs4911442	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs4911442-?	NR	2E-10		1.06342	[1.04-1.08]	NR [688737]	N
839	chr20	33355045	33355046	rs4911442	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	NCOA6	rs4911442-G	NR	1E-8		0.0229579	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
839	chr20	33355045	33355046	rs4911442	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	20q11.22		rs4911442-G	NR	2E-8		0.02899575	[0.019-0.039] years increase	NR [7400000] (imputed)	N
839	chr20	33355045	33355046	rs4911442	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs4911442-A	0.859637	1E-17		0.0837201	[0.065-0.103] unit increase	Affymetrix [17914406] (imputed)	N
839	chr20	33355045	33355046	rs4911442	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	20q11.22	NR	rs4911442-A	0.136117	2E-9		5.99	z score decrease	NR [10847151] (imputed)	N
839	chr20	33355045	33355046	rs4911442	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	NCOA6	rs4911442-A	0.8729	1E-6		0.048	[0.029-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
839	chr20	33356936	33356937	rs116917055	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	NCOA6	rs116917055-T	NR	5E-10		0.0507757	[0.035-0.067] unit increase	Affymetrix [321016] (imputed)	N
839	chr20	33358592	33358593	rs144057587	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs144057587-?	NR	7E-22				NR [~ 8900000] (imputed)	N
839	chr20	33358900	33358901	rs13040449	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	20q11.22	NCOA6	rs13040449-A	0.359	2E-24		0.575	[0.47-0.68] unit decrease	Affymetrix [NR] (imputed)	N
839	chr20	33363497	33363497	rs200356054	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	NCOA6	rs200356054-A	0.5983	4E-6		0.0319	[0.018-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
839	chr20	33373812	33373813	rs6119524	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20q11.22	NCOA6	rs6119524-T	0.3426	4E-9		0.0197	[0.013-0.026] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
839	chr20	33373812	33373813	rs6119524	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	20q11.22	NR	rs6119524-T	0.3407	1E-6	(women)	0.0234	[0.014-0.033] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
839	chr20	33389659	33389660	rs62211613	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs62211613-C	NR	1E-281		0.512	[0.35-0.68] unit increase	Affymetrix [8351141] (imputed)	N
839	chr20	33398507	33398508	rs62211616	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	20q11.22	ACSS2	rs62211616-A	0.179217	1E-10		6.41	z score increase	NR [~ 10847151] (imputed)	N
839	chr20	33409349	33409350	rs6088618	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6088618-A	0.43735	3E-19		0.0883923	[0.069-0.108] unit increase	Affymetrix [21375087] (imputed)	N
839	chr20	33409349	33409350	rs6088618	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs6088618-?	NR	5E-9		0.0589	[0.039-0.079] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
839	chr20	33411660	33411661	rs62211621	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs62211621-T	NR	1E-13		1.2415065	[1.17-1.31]	Affymetrix [5734850] (imputed)	N
839	chr20	33411870	33411871	rs6088619	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	NCOA6	rs6088619-A	0.8714	9E-13	(EA)	0.0389	[0.028-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr20	33411870	33411871	rs6088619	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	NCOA6	rs6088619-A	0.8714	8E-8	(EA, women)	0.0376	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr20	33411870	33411871	rs6088619	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	NCOA6	rs6088619-A	0.8714	2E-7	(EA,men)	0.0406	[0.025-0.056] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
839	chr20	33418616	33418616	rs71196763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q11.22	HMGB3P1	rs71196763-TGTATGTATGTAA	0.60237	1E-15		0.018632913	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
839	chr20	33418739	33418740	rs6088621	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q11.22	Intergenic	rs6088621-T	0.6152	1E-9	(MTAG)	0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
840	chr20	33425811	33425812	rs12625149	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs12625149-?	NR	1E-20		0.0190649	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
840	chr20	33429906	33429907	rs1569780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q11.22	GGT7	rs1569780-C	0.604896	2E-14		0.017669303	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
840	chr20	33430974	33430974	rs550358837	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GGT7	rs550358837-CA	NR	4E-18		0.0270698	[0.021-0.033] unit increase	Affymetrix [323123] (imputed)	N
840	chr20	33433628	33433629	rs55845370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20q11.22		rs55845370-G	NR	5E-15		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
840	chr20	33434115	33434115	rs149165215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q11.22		rs149165215-CTTTCT	NR	9E-39		0.0237	[0.02-0.027] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
840	chr20	33434115	33434115	rs149165215	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20q11.22	GGT7	rs149165215-CTTTCT	0.388	2E-19	(EA)	0.0032	[0.0024-0.004] unit decrease	Affymetrix [NR] (imputed)	N
840	chr20	33435160	33435161	rs17092148	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	20q11.22	intergenic	rs17092148-T	0.17936	8E-9		5.776	z score increase	Illumina [18485882] (imputed)	N
840	chr20	33447914	33447915	rs2295094	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	20q11.22	PXMP4	rs2295094-A	0.174406	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
840	chr20	33449738	33449739	rs11698996	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	20q11.22	GGT7	rs11698996-C	0.645	2E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [7947838] (imputed)	N
840	chr20	33456920	33456921	rs7273470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q11.22		rs7273470-?	NR	5E-12				NR [~ 8900000] (imputed)	N
840	chr20	33470513	33470514	rs6088638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ACSS2	rs6088638-C	NR	1E-11		0.0253519	[0.018-0.033] unit increase	Affymetrix [321016] (imputed)	N
840	chr20	33470513	33470514	rs6088638	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	ACSS2	rs6088638-C	NR	4E-10		0.0253877	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
840	chr20	33486046	33486047	rs8123210	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Acetate levels	115,050 European ancestry individuals	NA	20q11.22		rs8123210-G	0.376957	2E-14		0.0328676	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
840	chr20	33487277	33487278	rs67719508	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs67719508-C	0.319616	5E-12		0.081128	[0.058-0.104] unit increase	Affymetrix [21375087] (imputed)	N
840	chr20	33525406	33525407	rs7265992	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	20q11.22	NR	rs7265992-G	0.821159	4E-16		0.0317217	[0.024-0.04] unit increase	Affymetrix [16577424] (imputed)	N
840	chr20	33525406	33525407	rs7265992	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	20q11.22	NR	rs7265992-A	0.180857	7E-10		6.16	z score increase	NR [~ 10847151] (imputed)	N
840	chr20	33529765	33529766	rs2273684	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GSS	rs2273684-G	NR	6E-9		0.0184258	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
840	chr20	33529765	33529766	rs2273684	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q11.22	GSS	rs2273684-T	0.5756	1E-44		0.0032	[0.0026-0.0038] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
840	chr20	33529765	33529766	rs2273684	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	20q11.22	ACSS2, MYH7B, ITCH	rs2273684-G	0.355	7E-18		8.62	NR z score decrease	Illumina [26237160] (imputed)	N
840	chr20	33529765	33529766	rs2273684	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	20q11.22	TP53INP2	rs2273684-G	0.336	1E-11		0.221	[0.029-0.413] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
840	chr20	33533186	33533186	rs11453665	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	GSS	rs11453665-GA	NR	9E-9		0.0165269	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
840	chr20	33537226	33537226	rs34433793	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs34433793-AT	0.229957	4E-11		0.0811313	[0.057-0.106] unit increase	Affymetrix [21375087] (imputed)	N
840	chr20	33537226	33537226	rs34433793	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs34433793-AT	0.231217	9E-16		0.0691622	[0.052-0.086] unit increase	Affymetrix [17914406] (imputed)	N
840	chr20	33538720	33538721	rs11167248	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	20q11.22	MYH7B	rs11167248-?	NR	3E-11		0.0026	[0.0018-0.0034] unit increase	Affymetrix [21347608] (imputed)	N
840	chr20	33538720	33538721	rs11167248	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	20q11.22	MYH7B	rs11167248-?	NR	3E-12		0.0043	[0.0031-0.0055] unit increase	Affymetrix [21347608] (imputed)	N
840	chr20	33539999	33540000	rs2025096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20q11.22		rs2025096-A	NR	4E-20		0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	9E-22	(208 ms)	0.0648554	[0.051-0.079] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	9E-21	(202 ms)	0.0630007	[0.049-0.077] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	9E-20	(186 ms)	0.0605891	[0.047-0.074] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	9E-17	(158 ms)	0.0552734	[0.042-0.069] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	8E-23	(222 ms)	0.0666478	[0.053-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	8E-23	(218 ms)	0.0664946	[0.053-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	8E-22	(210 ms)	0.0647962	[0.051-0.079] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	7E-22	(232 ms)	0.0661031	[0.052-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	7E-20	(194 ms)	0.0619508	[0.048-0.076] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	6E-22	(230 ms)	0.0661676	[0.052-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	6E-22	(214 ms)	0.0654873	[0.052-0.079] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	6E-21	(234 ms)	0.0640876	[0.05-0.078] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	6E-20	(236 ms)	0.0625718	[0.049-0.076] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-22	(228 ms)	0.0658651	[0.052-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-21	(240 ms)	0.0646644	[0.051-0.079] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-21	(196 ms)	0.0638197	[0.05-0.078] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-21	(190 ms)	0.0630874	[0.049-0.077] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-20	(184 ms)	0.061298	[0.048-0.075] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	5E-15	(154 ms)	0.0524111	[0.039-0.066] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	4E-23	(224 ms)	0.0672254	[0.053-0.081] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	4E-19	(172 ms)	0.0603196	[0.047-0.074] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	4E-16	(162 ms)	0.0544212	[0.041-0.068] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	4E-14	(166 ms)	0.0502707	[0.037-0.064] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	3E-21	(198 ms)	0.0640445	[0.05-0.078] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	3E-20	(238 ms)	0.0632262	[0.049-0.077] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	3E-18	(180 ms)	0.0589097	[0.045-0.073] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	3E-17	(156 ms)	0.0560778	[0.042-0.07] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	3E-15	(164 ms)	0.0527558	[0.039-0.066] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-21	(206 ms)	0.0645916	[0.051-0.078] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-21	(204 ms)	0.0639222	[0.05-0.078] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-20	(192 ms)	0.0621688	[0.048-0.076] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-20	(188 ms)	0.0618813	[0.048-0.076] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-19	(182 ms)	0.0611863	[0.047-0.075] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-18	(176 ms)	0.0592361	[0.046-0.073] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-18	(170 ms)	0.0592006	[0.046-0.073] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	2E-17	(178 ms)	0.0580754	[0.044-0.072] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	1E-22	(226 ms)	0.0665226	[0.053-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	1E-22	(220 ms)	0.0661422	[0.052-0.08] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	1E-20	(200 ms)	0.0627798	[0.049-0.077] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	1E-18	(174 ms)	0.0598875	[0.046-0.074] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.22	GSS	rs2025096-G	0.808863	1E-15	(168 ms)	0.0539156	[0.04-0.068] unit increase	Affymetrix [10000000] (imputed)	N
840	chr20	33539999	33540000	rs2025096	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	20q11.22	MYH7B, GSS, EDEM2	rs2025096-?	NR	5E-11	(EA)	22.8	[16.02-29.58] unit decrease	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
840	chr20	33541423	33541427	rs772928051	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	GSS	rs772928051-CTTTT	0.9218	2E-6		0.0654	[0.038-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
840	chr20	33543428	33543429	rs150385410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.22		rs150385410-?	NR	5E-11				NR [~ 8900000] (imputed)	N
840	chr20	33545054	33545055	rs13041792	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20q11.22		rs13041792-A	NR	4E-17		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
840	chr20	33549945	33549946	rs11698868	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	20q11.22	MYH7B	rs11698868-T	0.19	8E-15		7.77	z-score increase	Affymetrix [4314223] (imputed)	N
841	chr20	33554760	33554761	rs6120772	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q11.22	GSS	rs6120772-C	0.812775	2E-19		0.00444439	[0.0035-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
841	chr20	33565754	33565755	rs11906160	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	20q11.22	MYH7B	rs11906160-?	NR	1E-6	(PC)			Illumina [283437]	N
841	chr20	33566498	33566499	rs6060139	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	20q11.22	MYH7B	rs6060139-C	0.556893	9E-9		0.03545	[0.024-0.046] unit increase	Illumina [24961484] (imputed)	N
841	chr20	33572978	33572979	rs3746448	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	20q11.22	EDEM2, MYH7B	rs3746448-C	0.83551	7E-9		0.024491	[0.016-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
841	chr20	33574764	33574765	rs3746446	26965164	Hanchard NA	2016-03-09	Hum Mol Genet	A genome-wide association study of congenital cardiovascular left-sided lesions shows association with a locus on chromosome 20.	Congenital left-sided heart lesions	592 European ancestry cases, 2,676 European ancestry controls	367 European ancestry cases, 5,159 European ancestry controls	20q11.22	MYH7B, miR-499A	rs3746446-G	0.18	1E-8		1.23		Illumina [534461]	N
841	chr20	33576988	33576989	rs1885120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q11.22		rs1885120-G	NR	2E-8		0.0222	[0.014-0.03] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
841	chr20	33576988	33576989	rs1885120	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs1885120-G	NR	2E-13		1.24275	[1.17278-1.31689]	Affymetrix [5734850] (imputed)	N
841	chr20	33576988	33576989	rs1885120	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs1885120-C	NR	6E-255		0.49	[0.33-0.65] unit increase	Affymetrix [8351141] (imputed)	N
841	chr20	33576988	33576989	rs1885120	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	20q11.22	MYH7B	rs1885120-C	0.07	2E-18		1.55	[NR]	Illumina [at least 560000] (imputed)	N
841	chr20	33583716	33583717	rs73095129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.22		rs73095129-?	NR	3E-10				NR [~ 8900000] (imputed)	N
841	chr20	33587197	33587198	rs3746435	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	20q11.22	MYH7B	rs3746435-C	0.183136	2E-11		0.284136	[0.2-0.37] ms decrease	Illumina [162199]	N
841	chr20	33587197	33587198	rs3746435	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	20q11.22	MYH7B	rs3746435-C	0.192545730118605	1E-9		0.35987496	[0.24-0.48] ms decrease	Illumina [213295]	N
841	chr20	33604041	33604042	rs3736802	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q11.22	TRPC4AP	rs3736802-T	0.48418	1E-18		0.0168562	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
841	chr20	33617540	33617541	rs571542291	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs571542291-?	NR	3E-8				NR [~ 8900000] (imputed)	N
841	chr20	33618471	33618472	rs76223987	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs76223987-?	NR	2E-9		0.1032	[0.07-0.137] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
841	chr20	33623700	33623701	rs6120804	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q11.22	TRPC4AP	rs6120804-C	0.820803	2E-9		0.0161892	[0.011-0.021] unit decrease	NR [13737936] (imputed)	N
841	chr20	33623700	33623701	rs6120804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q11.22		rs6120804-?	NR	2E-24				NR [~ 8900000] (imputed)	N
841	chr20	33623700	33623701	rs6120804	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs6120804-?	NR	4E-26		0.0274197	[0.022-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
841	chr20	33642395	33642396	rs62213709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs62213709-?	NR	3E-26		1.26418	[1.22-1.31]	NR [685523]	N
841	chr20	33642395	33642396	rs62213709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs62213709-?	NR	1E-9		1.35685	[1.26-1.46]	NR [674885]	N
841	chr20	33642395	33642396	rs62213709	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.22		rs62213709-?	NR	6E-15		1.12242	[1.09-1.15]	NR [688737]	N
841	chr20	33642395	33642396	rs62213709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	TRPC4AP	rs62213709-T	NR	3E-8		0.0343368	[0.022-0.047] unit decrease	Affymetrix [321016] (imputed)	N
841	chr20	33642395	33642396	rs62213709	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	20q11.22	NCOA6	rs62213709-T	0.0510259	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
841	chr20	33672370	33672371	rs6119569	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	20q11.22	PROCR	rs6119569-G	0.78	9E-17		0.022	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
841	chr20	33677198	33677200	rs148629844	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q11.22		rs148629844-G	NR	7E-10		0.0167	[0.011-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
841	chr20	33685049	33685050	rs6142296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	TRPC4AP	rs6142296-A	NR	4E-8		0.0158097	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
842	chr20	33690009	33690010	rs4911466	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q11.22	TRPC4AP	rs4911466-C	0.0966108	1E-33		0.20731165	[0.17-0.24] unit increase	Affymetrix [7260263] (imputed)	N
842	chr20	33690009	33690010	rs4911466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.22		rs4911466-?	NR	2E-14				NR [~ 8900000] (imputed)	N
842	chr20	33690009	33690010	rs4911466	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs4911466-T	NR	4E-13		1.2406	[1.17032-1.3151]	Affymetrix [5734850] (imputed)	N
842	chr20	33690009	33690010	rs4911466	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs4911466-C	NR	5E-242		0.481	[0.32-0.64] unit increase	Affymetrix [8351141] (imputed)	N
842	chr20	33691651	33691652	rs6060235	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	20q11.22	intergenic	rs6060235-A	0.901	2E-7		0.055	[0.033-0.077] unit increase	Affymetrix [7947838] (imputed)	N
842	chr20	33694800	33694801	rs6058181	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6058181-C	0.118353	1E-8		0.084935	[0.055-0.115] unit increase	Affymetrix [21375087] (imputed)	N
842	chr20	33713250	33713251	rs6142302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.22	EDEM2	rs6142302-A	NR	1E-8		0.0165777	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
842	chr20	33715776	33715777	rs2889874	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q11.22	EDEM2, MYH7B	rs2889874-G	0.451678	9E-10		0.016076	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
842	chr20	33719182	33719183	rs3746428	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.22	EDEM2	rs3746428-A	0.1592	3E-10		0.024	[0.017-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
842	chr20	33722862	33722863	rs2295888	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Prothrombin time	2,583 European ancestry individuals	986 European ancestry individuals	20q11.22	MYH7B, EDEM2, TRPC4AP, PROCR	rs2295888-A	NR	5E-13		0.02	[0.012-0.028] unit decrease	Illumina [~ 2500000] (imputed)	N
842	chr20	33728677	33728678	rs6120848	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA	20q11.22	EDEM2	rs6120848-C	0.23	5E-17	(EA)	0.08	[NR] ?g/mL decrease	Affymetrix [at least 22484459] (imputed)	N
842	chr20	33730386	33730387	rs6120849	20802025	Tang W	2010-08-27	Blood	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals	20q11.22	EDEM2	rs6120849-T	0.23	7E-37		0.14	[0.12-0.16] ug/ml decrease	Affymetrix [2461269]	N
842	chr20	33733703	33733704	rs6088730	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q11.22	EDEM2	rs6088730-C	0.52	3E-10		6.28	z-score increase	Affymetrix [4311822] (imputed)	N
842	chr20	33736514	33736515	rs6060269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q11.22		rs6060269-A	NR	5E-12		0.0161	[0.012-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
842	chr20	33736514	33736515	rs6060269	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q11.22	EDEM2	rs6060269-C	0.524797	8E-17		0.00182007	[0.0014-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
842	chr20	33745045	33745046	rs6088734	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q11.22	EDEM2	rs6088734-A	0.4329	1E-27		0.0029	[0.0023-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
842	chr20	33745675	33745676	rs6088735	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA	20q11.22	PROCR	rs6088735-T	NR	3E-10		1.08	[1.05-1.10]	Affymetrix, Illumina [12923718] (imputed)	N
842	chr20	33745675	33745676	rs6088735	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	20q11.22	UQCC, GDF5, CEP250, ERGIC3, C20orf173, SPAG4, FER1L4, CPNE1, RBM12, FAM83C, EDEM2, PIGU, TP53INP2, NCOA6, HMGB3P1, GGT7, ACSS2, GSS, MYH7B, MIR499A, MIR499B, TRPC4AP, PROCR, EIF6, MMP24	rs6088735-C	0.7665	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
842	chr20	33745675	33745676	rs6088735	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	20q11.22	EDEM2, PIGU, TP53INP2, NCOA6, HMGB3P1, GGT7, ACSS2, GSS, MYH7B, MIR499A, MIR499B, TRPC4AP, PROCR, EIF6, MMP24, FAM83C, UQCC, GDF5, CEP250, ERGIC3, C20orf173, SPAG4, FER1L4, CPNE1, RBM12	rs6088735-C	0.7665	6E-6	(men)	0.0333	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
842	chr20	33745675	33745676	rs6088735	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q11.22	EDEM2, PIGU, TP53INP2, NCOA6, HMGB3P1, GGT7, ACSS2, GSS, MYH7B, MIR499A, MIR499B, TRPC4AP, PROCR, EIF6, MMP24, FAM83C, UQCC, GDF5, CEP250, ERGIC3, C20orf173, SPAG4, FER1L4, CPNE1	rs6088735-C	0.7665	8E-8		0.0078	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
842	chr20	33753261	33753262	rs6060278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6060278-C	NR	5E-13		0.0208	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
842	chr20	33753261	33753262	rs6060278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6060278-C	NR	2E-14		0.0222	[0.017-0.028] unit increase	Affymetrix [9000000] (imputed)	N
842	chr20	33753261	33753262	rs6060278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q11.22	NR	rs6060278-C	NR	2E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
842	chr20	33753261	33753262	rs6060278	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	20q11.22	NR	rs6060278-C	NR	5E-9		0.0169	[0.011-0.023] unit increase	Affymetrix [9000000] (imputed)	N
842	chr20	33757179	33757180	rs6120854	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6120854-T	0.212193	1E-9		0.0715122	[0.048-0.095] unit increase	Affymetrix [21375087] (imputed)	N
842	chr20	33759271	33759272	rs2069940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROC	5,364 Icelandic ancestry individuals	NA	20q11.22		rs2069940-G	0.101	1E-88		0.601019	[0.54-0.66] unit increase	Illumina [7506463] (imputed)	N
842	chr20	33759271	33759272	rs2069940	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROC	5,348 Icelandic ancestry individuals	NA	20q11.22		rs2069940-G	0.101	1E-104		0.583735	[0.53-0.64] unit increase	Illumina [7506463] (imputed)	N
842	chr20	33761836	33761837	rs2069945	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q11.22	EDEM2	rs2069945-C	0.474074	1E-17		0.0173763	[0.013-0.021] unit increase	Affymetrix [NR] (imputed)	N
842	chr20	33761836	33761837	rs2069945	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q11.22		rs2069945-?	NR	8E-20		0.0188444	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
842	chr20	33763763	33763764	rs2069951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	EDEM2, PROCR	rs2069951-A	NR	6E-9		0.0389537	[0.026-0.052] unit increase	Affymetrix [321016] (imputed)	N
842	chr20	33764553	33764554	rs867186	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 799 African American cases, 157,769 European ancestry controls, 14,353 African American controls	NA		PROCR	rs867186-G	NR	7E-9		1.11	[1.07-1.14]	Affymetrix, Illumina [12923718] (imputed)	N
842	chr20	33764553	33764554	rs867186	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity or levels	24,075 European ancestry individuals, 3,420 African American individuals	NA		PROCR	rs867186-G	0.1	7E-64		0.053	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
842	chr20	33764553	33764554	rs867186	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA		PROCR	rs867186-G	0.1	3E-64		0.057	[0.051-0.063] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
842	chr20	33764553	33764554	rs867186	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Prothrombin time	58,110 Japanese ancestry individuals	NA		PROCR	rs867186-?	NR	6E-24		0.1495	[0.12-0.18] unit decrease novel	Illumina [6108953] (imputed)	N
842	chr20	33764553	33764554	rs867186	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA		PROCR	rs867186-A	0.8971	7E-12		0.0573	[0.041-0.074] unit increase	Affymetrix [at least 7947838] (imputed)	N
842	chr20	33764553	33764554	rs867186	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls		PROCR	rs867186-A	0.8948	5E-12		0.063	[0.045-0.081] unit increase	NR [8041861] (imputed)	N
842	chr20	33764553	33764554	rs867186	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		TRPC4AP, EDEM2, PROCR, GSS, MYH7B, MIR499A, RNU6-407P, SNORD56, RP11-42O4.2, RNA5SP483, RP4-614O4.12	rs867186-G	0.1183551	5E-38	(Vitamin K-dependent protein C)	0.8382	[0.72-0.96] unit increase	Affymetrix [509946]	N
842	chr20	33764553	33764554	rs867186	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA		PROCR	rs867186-G	0.1	9E-237	(EA)	0.46	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
842	chr20	33764553	33764554	rs867186	28082259	Pankow JS	2017-01-12	Arterioscler Thromb Vasc Biol	Identification of Genetic Variants Linking Protein C and Lipoprotein Metabolism: The ARIC Study (Atherosclerosis Risk in Communities).	Protein C levels	10,778 European ancestry individuals, 2,706 African American individuals	NA		PROCR	rs867186-G	0.09	6E-57	(AA)	0.44	[NR] ?g/mL increase	Affymetrix [at least 22484459] (imputed)	N
842	chr20	33764553	33764554	rs867186	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals		PROCR	rs867186-A	0.8748	4E-8		0.232	mmHg increase	Illumina [242296]	N
842	chr20	33764553	33764554	rs867186	25376901	Munir MS	2014-11-05	Genet Epidemiol	Genetic markers associated with plasma protein C level in African Americans: the atherosclerosis risk in communities (ARIC) study.	Protein C levels	2,701 African American individuals	NA		PROCR	rs867186-C	0.09	1E-64		0.49	[0.43-0.55] unit increase	Affymetrix [2649157]	N
842	chr20	33764553	33764554	rs867186	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA		PROCR	rs867186-G	0.10	2E-6	(ACVn ratio)	0.37	[0.21-0.53] unit increase	Illumina [472123]	N
842	chr20	33764553	33764554	rs867186	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA		PROCR	rs867186-G	0.077	4E-9	(PC)	0.845	[NR] SD increase	Illumina [283437]	N
842	chr20	33764553	33764554	rs867186	21502573	Smith NL	2011-04-21	Circulation	Genetic predictors of fibrin D-dimer levels in healthy adults.	D-dimer levels	21,052 European ancestry individuals	NA		PROCR	rs867186-G	0.091	4E-6		0.0484	[NR] % increase	Affymetrix, Illumina [2522393] (imputed)	N
842	chr20	33764553	33764554	rs867186	20802025	Tang W	2010-08-27	Blood	Genome-wide association study identifies novel loci for plasma levels of protein C: the ARIC study.	Protein C levels	8,048 European ancestry individuals	1,376 European ancestry individuals		PROCR	rs867186-C	0.10	2E-200		0.47	[0.44-0.50] ug/ml increase	Affymetrix [2461269]	N
842	chr20	33764553	33764554	rs867186	20231535	Smith NL	2010-03-15	Circulation	Novel associations of multiple genetic loci with plasma levels of factor VII, factor VIII, and von Willebrand factor: The CHARGE (Cohorts for Heart and Aging Research in Genome Epidemiology) Consortium.	Factor VII levels	15,422 European ancestry individuals	Up to 7,604 European ancestry individuals		PROCR	rs867186-?	NR	6E-37				Affymetrix, Illumina [2734954] (imputed)	N
842	chr20	33765770	33765771	rs1415775	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs1415775-?	NR	3E-12		1.08576	[1.06-1.11]	NR [685523]	N
842	chr20	33767769	33767770	rs11907011	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	20q11.22	PROCR	rs11907011-T	0.11	3E-59	(EA)	0.059	NR unit increase	Affymetrix, Illumina [10044948] (imputed)	N
842	chr20	33768251	33768252	rs6088753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	EDEM2	rs6088753-C	NR	3E-8		0.0156931	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
842	chr20	33768661	33768663	rs150939404	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.22	PROCR	rs150939404-T	0.0405	7E-20		0.0536	[0.042-0.065] unit increase	Affymetrix [18391927] (imputed)	N
842	chr20	33772242	33772243	rs6060288	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs6060288-?	NR	4E-21		0.1037	[0.082-0.125] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
842	chr20	33772727	33772728	rs143975064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs143975064-A	NR	4E-9		0.0413563	[0.028-0.055] unit increase	Affymetrix [323123] (imputed)	N
842	chr20	33774533	33774534	rs34234989	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	20q11.22	PROCR	rs34234989-?	0.2852	7E-9		1.1299435	[1.08-1.18]	Illumina [at least 560000] (imputed)	N
842	chr20	33775199	33775200	rs11167260	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q11.22	PROCR, MMP24	rs11167260-?	NR	4E-9		0.0516517	[0.034-0.069] unit decrease	Illumina [4804024] (imputed)	N
842	chr20	33775199	33775200	rs11167260	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	20q11.22	PROCR	rs11167260-?		4E-6				Illumina [859311]	N
842	chr20	33775368	33775369	rs10747514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs10747514-A	NR	2E-11		0.0236529	[0.017-0.031] unit decrease	Affymetrix [323858] (imputed)	N
842	chr20	33775368	33775369	rs10747514	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	EDEM2	rs10747514-A	NR	5E-10		0.0218225	[0.015-0.029] unit decrease	Affymetrix [127266] (imputed)	N
842	chr20	33775368	33775369	rs10747514	31676865	Klarin D	2019-11-01	Nat Genet	Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease.	Venous thromboembolism	23,151 European ancestry cases, 553,439 European ancestry controls, 2,261 African American cases, 49,400 African American controls, 654 Hispanic cases, 21,214 Hispanic controls	17,672 cases, 167,295 controls	20q11.22	EDEM2	rs10747514-A	0.3183	4E-32		1.124007	[1.10-1.15]	Affymetrix [up to 34000000] (imputed)	N
842	chr20	33777611	33777612	rs6087685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.22		rs6087685-?	NR	2E-76				NR [~ 8900000] (imputed)	N
842	chr20	33777611	33777612	rs6087685	25772935	Germain M	2015-03-12	Am J Hum Genet	Meta-analysis of 65,734 individuals identifies TSPAN15 and SLC44A2 as two susceptibility loci for venous thromboembolism.	Venous thromboembolism	7,507 European ancestry cases, 52,632 European ancestry controls	3,009 European ancestry cases, 2,586 European ancestry controls	20q11.22	PROCR	rs6087685-C	0.302	2E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [6751884] (imputed)	N
842	chr20	33780969	33780970	rs6060300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs6060300-C	NR	5E-11		0.0266778	[0.019-0.035] unit decrease	Affymetrix [323858] (imputed)	N
842	chr20	33780969	33780970	rs6060300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	EDEM2	rs6060300-C	NR	4E-10		0.0253231	[0.017-0.033] unit decrease	Affymetrix [127266] (imputed)	N
842	chr20	33780969	33780970	rs6060300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs6060300-C	NR	1E-12		0.0282397	[0.02-0.036] unit increase	Affymetrix [323123] (imputed)	N
842	chr20	33780984	33780985	rs4911477	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q11.22	PROCR, MMP24	rs4911477-C	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
842	chr20	33780984	33780985	rs4911477	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q11.22	PROCR, MMP24	rs4911477-C	NR	4E-6				Affymetrix, Illumina [NR] (imputed)	N
842	chr20	33780984	33780985	rs4911477	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q11.22	PROCR, MMP24	rs4911477-C	NR	3E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
842	chr20	33780984	33780985	rs4911477	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q11.22	PROCR, MMP24	rs4911477-C	NR	6E-6	(EA)	0.007815	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
842	chr20	33783804	33783805	rs141932846	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	20q11.22	PROCR, MMP24-AS1-EDEM2	rs141932846-G	0.904756	3E-7		1.06	[1.04-1.09]	NR [8126035] (imputed)	N
842	chr20	33789141	33789142	rs8114671	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs8114671-?	NR	4E-10		0.0372118	[0.026-0.049] unit decrease	Illumina [34656550] (imputed)	N
842	chr20	33789141	33789142	rs8114671	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	PROCR	rs8114671-C	0.56	1E-15		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
842	chr20	33793158	33793159	rs6088764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs6088764-A	NR	5E-15		0.0271368	[0.02-0.034] unit increase	Affymetrix [323123] (imputed)	N
842	chr20	33793257	33793257	rs148597850	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs148597850-AAT	0.367941	2E-8		0.0594139	[0.038-0.081] unit decrease	Affymetrix [21375087] (imputed)	N
842	chr20	33794123	33794124	rs146832828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs146832828-G	NR	2E-9		0.0445922	[0.03-0.059] unit increase	Affymetrix [323123] (imputed)	N
842	chr20	33794377	33794378	rs6060308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	EDEM2	rs6060308-A	NR	9E-9		0.0185712	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
842	chr20	33794377	33794378	rs6060308	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6060308-A	0.263378	2E-14		0.0845073	[0.063-0.106] unit increase	Affymetrix [21375087] (imputed)	N
842	chr20	33794377	33794378	rs6060308	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q11.22		rs6060308-A	0.2788	2E-9		0.0095	[0.0064-0.0126] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
842	chr20	33794377	33794378	rs6060308	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q11.22	Intergenic	rs6060308-A	0.2788	2E-10	(MTAG)	0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
842	chr20	33795622	33795623	rs6142329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2	rs6142329-G	NR	5E-15		0.0244605	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
842	chr20	33799279	33799280	rs6088765	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q11.22	NR	rs6088765-C	0.4467	1E-6	(EA)	1.0630414	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
842	chr20	33799279	33799280	rs6088765	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	20q11.22	UQCC, CEP250, PROCR	rs6088765-G	0.437	2E-8		1.079	[1.041-1.117]	Affymetrix, Illumina [1230000] (imputed)	N
842	chr20	33807117	33807117	rs747202389	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	MMP24-AS1	rs747202389-T	0.8057	3E-6		0.0499	[0.029-0.071] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
842	chr20	33810809	33810810	rs11475465	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.22	NR	rs11475465-T	0.96	2E-56	(Agouti-signaling protein, ASIP.5676.54.3)	1.15	[1.01-1.29] unit decrease	Affymetrix [10572788] (imputed)	N
843	chr20	33821576	33821577	rs6058209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	EDEM2, MMP24-AS1, MMP24	rs6058209-A	NR	6E-10		0.0187324	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
843	chr20	33823831	33823832	rs2425020	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs2425020-C	0.744016	8E-11		0.0732141	[0.051-0.096] unit increase	Affymetrix [21375087] (imputed)	N
843	chr20	33828824	33828825	rs6142338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q11.22		rs6142338-A	NR	3E-8		0.0225	[0.014-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
843	chr20	33828824	33828825	rs6142338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	20q11.22		rs6142338-A	0.455529	3E-8		0.022484	[0.015-0.03] unit decrease	Illumina [13476266] (imputed)	N
843	chr20	33829405	33829406	rs6120880	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6120880-G	0.418695	1E-23		0.0983743	[0.079-0.118] unit increase	Affymetrix [21375087] (imputed)	N
843	chr20	33833728	33833729	rs6119593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6119593-A	NR	1E-10		0.0218	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
843	chr20	33833728	33833729	rs6119593	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q11.22	NR	rs6119593-A	NR	2E-11		0.0228	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
843	chr20	33835772	33835773	rs6088776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q11.22	NR	rs6088776-T	0.860648	2E-10		0.0104983	[0.007-0.014] unit increase	Affymetrix [16585854] (imputed)	N
843	chr20	33835772	33835773	rs6088776	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q11.22	NR	rs6088776-T	0.860648	4E-10		0.0122291	[0.0082-0.0163] unit increase	Affymetrix [16585866] (imputed)	N
843	chr20	33839938	33839939	rs2247828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24	rs2247828-G	NR	2E-12		0.0311893	[0.022-0.04] unit increase	Affymetrix [323123] (imputed)	N
843	chr20	33844937	33844938	rs2425024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24	rs2425024-C	NR	2E-13		0.0245209	[0.018-0.031] unit decrease	Affymetrix [323858] (imputed)	N
843	chr20	33844937	33844938	rs2425024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24	rs2425024-C	NR	8E-12		0.0228595	[0.016-0.029] unit decrease	Affymetrix [127266] (imputed)	N
843	chr20	33844937	33844938	rs2425024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24	rs2425024-C	NR	2E-29		0.0370619	[0.031-0.044] unit increase	Affymetrix [323123] (imputed)	N
843	chr20	33844937	33844938	rs2425024	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q11.22	NR	rs2425024-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
843	chr20	33847153	33847154	rs2425025	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.22		rs2425025-G	NR	4E-28		1.3762	NR	Affymetrix [7846216] (imputed)	N
843	chr20	33847153	33847154	rs2425025	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs2425025-A	NR	7E-13		1.24745	[1.17437-1.32508]	Affymetrix [5734850] (imputed)	N
843	chr20	33847153	33847154	rs2425025	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs2425025-G	NR	4E-253		0.504	[0.34-0.67] unit increase	Affymetrix [8351141] (imputed)	N
843	chr20	33847252	33847253	rs2425026	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	20q11.22	AHCY, ITCH, DYNLRB1, MAP1LC3A, PIGU, NCOA6, TP53INP2, GGT7, ACSS2, GSS, MYH7B, TRPC4AP, EDEM2, PROCR, MMP24, EIF6, FAM83C, UQCC1	rs2425026-?	NR	8E-12		0.0168691	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
843	chr20	33849178	33849179	rs1555322	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	20q11.22	MMP24	rs1555322-?	NR	4E-6				Affymetrix [504219]	N
843	chr20	33864483	33864484	rs7280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24, RP4-614O4.11	rs7280-G	NR	3E-20		0.0293385	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
843	chr20	33864483	33864484	rs7280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24, RP4-614O4.11	rs7280-G	NR	2E-17		0.0271026	[0.021-0.033] unit decrease	Affymetrix [127266] (imputed)	N
843	chr20	33864483	33864484	rs7280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	EDEM2, MMP24-AS1, MMP24, RP4-614O4.11	rs7280-G	NR	3E-18		0.0250507	[0.019-0.031] unit increase	Affymetrix [321016] (imputed)	N
843	chr20	33864483	33864484	rs7280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24, RP4-614O4.11	rs7280-G	NR	2E-42		0.0427712	[0.037-0.049] unit increase	Affymetrix [323123] (imputed)	N
843	chr20	33864483	33864484	rs7280	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q11.22	EDEM2, MMP24-AS1, MMP24, RP4-614O4.11	rs7280-G	NR	3E-13		0.0229835	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
843	chr20	33865587	33865588	rs6060343	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.22	MMP24	rs6060343-C	0.1271	6E-32		0.0383	[0.032-0.045] unit increase	Affymetrix [18391927] (imputed)	N
843	chr20	33867696	33867697	rs619865	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Freckling	9,126 European ancestry individuals	NA	20q11.22	ASIP	rs619865-A	0.10	5E-14		0.77	[NR] unit increase	Illumina [535076]	N
843	chr20	33869734	33869735	rs2425044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q11.22	EIF6	rs2425044-T	0.203393	3E-15		0.021986285	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33869734	33869735	rs2425044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q11.22	EIF6	rs2425044-T	0.203377	2E-21		0.026117243	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33869734	33869735	rs2425044	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q11.22	EIF6	rs2425044-T	0.203381	2E-13		0.020870354	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33872190	33872191	rs144868364	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	20q11.22		rs144868364-?	NR	3E-11		0.367639	[0.26-0.48] unit decrease	NR [9800000] (imputed)	N
843	chr20	33872190	33872191	rs144868364	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	20q11.22		rs144868364-?	NR	3E-13		0.396767	[0.29-0.51] unit decrease	NR [9800000] (imputed)	N
843	chr20	33872722	33872723	rs2425048	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	20q11.22		rs2425048-?	NR	3E-8				NR [~ 8900000] (imputed)	N
843	chr20	33874150	33874151	rs6060347	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	FAM83C	rs6060347-A	0.7827	2E-11		0.0521	[0.037-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
843	chr20	33880362	33880363	rs2425051	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	20q11.22	NR	rs2425051-?	NR	8E-10		0.0631	[0.043-0.083] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
843	chr20	33880545	33880546	rs8120559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FAM83C	rs8120559-A	NR	4E-11		0.0255852	[0.018-0.033] unit decrease	Affymetrix [323858] (imputed)	N
843	chr20	33880545	33880546	rs8120559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	FAM83C	rs8120559-A	NR	6E-10		0.0240168	[0.016-0.032] unit decrease	Affymetrix [127266] (imputed)	N
843	chr20	33880545	33880546	rs8120559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FAM83C	rs8120559-A	NR	1E-12		0.0247082	[0.018-0.032] unit increase	Affymetrix [321016] (imputed)	N
843	chr20	33880545	33880546	rs8120559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FAM83C	rs8120559-A	NR	5E-19		0.0338931	[0.026-0.041] unit increase	Affymetrix [323123] (imputed)	N
843	chr20	33880545	33880546	rs8120559	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs8120559-A	0.206207	4E-10		0.0746882	[0.051-0.098] unit increase	Affymetrix [21375087] (imputed)	N
843	chr20	33881503	33881504	rs574440893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q11.22	FAM83C	rs574440893-A	0.00915299999999997	2E-10		0.09503223	[0.066-0.124] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33881503	33881504	rs574440893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q11.22	FAM83C	rs574440893-A	0.00915299999999997	1E-10		0.09590769	[0.067-0.125] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33881503	33881504	rs574440893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q11.22	FAM83C	rs574440893-A	0.00915100000000002	7E-9		0.08832459	[0.058-0.118] unit increase	Affymetrix [93095623] (imputed)	N
843	chr20	33883014	33883015	rs7272884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FAM83C	rs7272884-A	NR	3E-16		0.0310915	[0.024-0.039] unit increase	Affymetrix [323123] (imputed)	N
843	chr20	33883014	33883015	rs7272884	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs7272884-A	0.204198	2E-8		0.0687113	[0.045-0.092] unit increase	Affymetrix [21375087] (imputed)	N
843	chr20	33889676	33889677	rs666006	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.22		rs666006-?	NR	2E-30		1.21952	[1.19-1.25]	NR [685523]	N
843	chr20	33889676	33889677	rs666006	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.22		rs666006-?	NR	1E-10		1.29216	[1.21-1.37]	NR [674885]	N
843	chr20	33890060	33890061	rs6060355	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	20q11.22	NR	rs6060355-A	0.357275	8E-13		0.004995233	[0.0036-0.0064] m increase	Illumina [24111857] (imputed)	N
843	chr20	33894462	33894463	rs878639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs878639-?	NR	1E-300				NR [~ 8900000] (imputed)	N
843	chr20	33895946	33895947	rs6058227	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	UQCC1	rs6058227-T	0.0951	2E-9		0.0659	[0.044-0.087] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
843	chr20	33897148	33897149	rs117863149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	UQCC1	rs117863149-T	NR	8E-9		0.0357113	[0.024-0.048] unit increase	Affymetrix [321016] (imputed)	N
843	chr20	33901273	33901274	rs78070351	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	20q11.22	UQCC1	rs78070351-G	NR	2E-6		1.72	[NR] unit decrease	Affymetrix [NR] (imputed)	N
843	chr20	33901448	33901449	rs4911486	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	UQCC1	rs4911486-T	0.1078	6E-6		0.0488	[0.028-0.07] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
843	chr20	33905618	33905619	rs1406948	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	20q11.22	NR	rs1406948-A	0.3682	2E-19		0.0159	[0.012-0.019] unit decrease	NR [~ 27400000] (imputed)	N
843	chr20	33905618	33905619	rs1406948	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q11.22	NA	rs1406948-A	0.3679	4E-15		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
843	chr20	33905618	33905619	rs1406948	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	20q11.22	NR	rs1406948-A	0.3679	4E-15		0.0137	[0.01-0.017] unit decrease	NR [~ 27400000] (imputed)	N
843	chr20	33905618	33905619	rs1406948	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q11.22	GDF5	rs1406948-G	0.6074999999999999	2E-9	(EA)	0.0276	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr20	33905618	33905619	rs1406948	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q11.22	GDF5	rs1406948-G	0.6027	1E-11	(EA, men)	0.0451	[0.032-0.058] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr20	33905618	33905619	rs1406948	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q11.22	GDF5	rs1406948-?	0.6074999999999999	1E-10	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
843	chr20	33907160	33907161	rs6060369	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs6060369-?	NR	1E-13		0.04463944	[0.033-0.056] unit increase	Illumina [34656550] (imputed)	N
843	chr20	33907160	33907161	rs6060369	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	20q11.22	UQCC	rs6060369-T	0.7	8E-32		0.064	[0.05-0.078] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
843	chr20	33907160	33907161	rs6060369	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	20q11.22	UQCC, GDF5	rs6060369-C	0.36	1E-16		0.44	[0.34-0.72] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
843	chr20	33907160	33907161	rs6060369	18193045	Sanna S	2008-01-13	Nat Genet	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	20q11.22	BFZB	rs6060369-C	0.44	2E-16		0.44	[NR] cm increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
843	chr20	33907908	33907909	rs6088791	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	20q11.22	UQCC	rs6088791-?	NR	8E-7		1.1	[0.71-1.49] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
843	chr20	33909783	33909784	rs6088792	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	20q11.22	UQCC, CEP250, GDF5, MMP24, EIF6	rs6088792-T	0.26	8E-7		4.7	[2.74-6.66] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
843	chr20	33912370	33912371	rs2425059	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	20q11.22		rs2425059-T	NR	2E-14	(East Asian)			Affymetrix [NR] (imputed)	N
843	chr20	33914207	33914208	rs6060373	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs6060373-?	NR	1E-13		0.04461641	[0.033-0.056] unit increase	Illumina [34656550] (imputed)	N
843	chr20	33914207	33914208	rs6060373	25848760	Sun Y	2015-04-07	PLoS One	A common variant of ubiquinol-cytochrome c reductase complex is associated with DDH.	Developmental dysplasia of the hip	386 Han Chinese ancestry cases, 558 Han Chinese ancestry controls	755 Han Chinese ancestry cases, 944 Han Chinese ancestry controls	20q11.22	UQCC	rs6060373-A	0.72	4E-6		1.35	(1.19-1.53)	Illumina [704516]	N
843	chr20	33914207	33914208	rs6060373	23207799	Deng FY	2012-11-30	Bone	Genome-wide association study identified UQCC locus for spine bone size in humans.	Spine bone size	2,286 European ancestry individuals	2,503 European ancestry individuals, 1,627 Han Chinese ancestry individuals	20q11.22	UQCC	rs6060373-C	0.39	2E-7		0.79	cm^2 increase	Affymetrix [746709]	N
843	chr20	33914207	33914208	rs6060373	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	20q11.22	GDF5	rs6060373-A	0.62	2E-17		0.08	[0.05-0.11] s.d. decrease (males)	Affymetrix [402951]	N
843	chr20	33914298	33914302	rs201338261	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	20q11.22	NR	rs201338261-G	0.9765	5E-7		0.2104	[0.13-0.29] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
843	chr20	33914817	33914818	rs147058474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs147058474-?	NR	7E-16				NR [~ 8900000] (imputed)	N
843	chr20	33915814	33915814	rs11481307	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs11481307-GA	0.251243	1E-11		0.0845366	[0.06-0.109] unit increase	Affymetrix [21375087] (imputed)	N
843	chr20	33926102	33926103	rs2248393	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	20q11.22	NR	rs2248393-C	0.63	4E-14		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
843	chr20	33935437	33935438	rs17421899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	UQCC1	rs17421899-C	NR	4E-9		0.0256347	[0.017-0.034] unit decrease	Affymetrix [321016] (imputed)	N
843	chr20	33935437	33935438	rs17421899	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs17421899-C	0.115997	1E-9		0.0904347	[0.061-0.12] unit decrease	Affymetrix [21375087] (imputed)	N
843	chr20	33936337	33936338	rs6142351	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1) and waist to hip ratio adjusted for BMI	up to 100,285 Chinese ancestry individuals	up to 457,756 European ancestry individuals	20q11.22		rs6142351-G	NR	5E-16	(East Asian)			Affymetrix [NR] (imputed)	N
843	chr20	33940861	33940862	rs62211527	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	UQCC1	rs62211527-G	NR	4E-12		0.0327682	[0.024-0.042] unit decrease	Affymetrix [323123] (imputed)	N
843	chr20	33945474	33945474	rs551320013	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs551320013-CA	0.532531	4E-13		0.0731314	[0.053-0.093] unit decrease	Affymetrix [21375087] (imputed)	N
843	chr20	33945898	33945899	rs150487860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	UQCC1	rs150487860-A	NR	6E-10		0.0464418	[0.032-0.061] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	33951798	33951799	rs4911492	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q11.22	GDF5	rs4911492-A	0.606	7E-10	(EA, men)	0.0361	[0.025-0.047] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	33959147	33959147	rs547181612	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs547181612-GT	0.590013	3E-17		0.0872968	[0.067-0.108] unit decrease	Affymetrix [21375087] (imputed)	N
844	chr20	33959147	33959147	rs547181612	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	20q11.22	NR	rs547181612-GT	0.59	1E-16		1.07	[1.06-1.09]	Affymetrix, Illumina [up to 17000000] (imputed)	N
844	chr20	33963217	33963218	rs73109573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	UQCC1	rs73109573-T	NR	1E-11		0.0301083	[0.021-0.039] unit decrease	Affymetrix [323123] (imputed)	N
844	chr20	33968938	33968939	rs10485509	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q11.22	GDF5	rs10485509-?	NR	9E-6	(glutamine)	0.60731363	[0.34-0.88] unit increase	Affymetrix [at least 2500000] (imputed)	N
844	chr20	33970461	33970462	rs2378353	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	20q11.22	NR	rs2378353-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
844	chr20	33971913	33971914	rs4911494	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	20q11.22	UQCC1	rs4911494-T	0.5948	3E-16		0.025	[0.019-0.031] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	33971913	33971914	rs4911494	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	20q11.22	UQCC1	rs4911494-T	0.6164	3E-14		0.0253	[0.019-0.032] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	33971913	33971914	rs4911494	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	20q11.22	UQCC1	rs4911494-T	0.6015	2E-16		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	33971913	33971914	rs4911494	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	20q11.22	UQCC1	rs4911494-T	0.6181	3E-13		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	33972898	33972899	rs4911179	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	20q11.22	UQCC	rs4911179-?	NR	8E-8	(EA)	1.7	[1.11-2.29] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
844	chr20	33972947	33972948	rs4911180	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q11.22	UQCC	rs4911180-A	0.6062	2E-8	(EA)	0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	33972947	33972948	rs4911180	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	20q11.22	NR	rs4911180-A	0.603048781484029	4E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
844	chr20	33972947	33972948	rs4911180	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q11.22	NR	rs4911180-A	0.603048781484029	3E-9		0.019708263	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
844	chr20	33975180	33975181	rs6088813	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs6088813-?	NR	3E-10		0.03760733	[0.026-0.049] unit decrease	Illumina [34656550] (imputed)	N
844	chr20	33975180	33975181	rs6088813	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	20q11.22	UQCC1	rs6088813-C	0.41441	5E-19		8.915	unit decrease	Illumina [179215]	N
844	chr20	33975180	33975181	rs6088813	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	20q11.22	UQCC	rs6088813-?	0.11	1E-13		0.09	[0.07-0.11] s.d. decrease	Illumina [229216]	N
844	chr20	33982845	33982846	rs1204656	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20q11.22	UQCC1, GDF5, GDF5OS	rs1204656-G	0.3047189	1E-16	(EA, Copine-1)	0.3931	[0.3-0.48] unit decrease	Affymetrix [509946]	N
844	chr20	33986565	33986566	rs1886693	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	20q11.22	UQCC1	rs1886693-?	NR	2E-9		0.47	[0.31-0.63] unit increase	Affymetrix [5682219] (imputed)	N
844	chr20	33988113	33988114	rs62210588	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs62210588-A	NR	7E-10		1.2082738	[1.14-1.28]	Affymetrix [5734850] (imputed)	N
844	chr20	33988113	33988114	rs62210588	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs62210588-G	NR	4E-207		0.456	[0.3-0.62] unit increase	Affymetrix [8351141] (imputed)	N
844	chr20	33993090	33993091	rs1204660	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	UQCC1	rs1204660-A	NR	2E-12		0.0315156	[0.023-0.04] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34001249	34001250	rs6087705	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q11.22	NR	rs6087705-G	0.3699	1E-17				NR [9056863] (imputed)	N
844	chr20	34002870	34002871	rs7409538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	UQCC1	rs7409538-T	NR	2E-8		0.0411612	[0.027-0.056] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	34005239	34005240	rs6060402	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	20q11.22	UQCC1-GDF5	rs6060402-?	NR	6E-9		0.46	[0.3-0.62] unit increase	Affymetrix [5682219] (imputed)	N
844	chr20	34005239	34005240	rs6060402	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	20q11.22	intergenic	rs6060402-C	0.3585	3E-13		0.005148273	[0.0038-0.0065] m decrease	Illumina [24111857] (imputed)	N
844	chr20	34006286	34006287	rs76019983	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q11.22	NR	rs76019983-A	0.01045	2E-8	(ACAD11)	0.09225	NR unit increase	Illumina [1671387] (imputed)	N
844	chr20	34006969	34006970	rs6141551	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q11.22	NR	rs6141551-C	NR	3E-9		1.042	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
844	chr20	34007514	34007515	rs4911498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	UQCC1	rs4911498-T	NR	4E-8		0.0306617	[0.02-0.042] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	34008622	34008623	rs6142381	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q11.22	GDF5	rs6142381-A	0.5966	5E-14		0.1471	[0.11-0.19] mmHg decrease	Affymetrix [NR] (imputed)	N
844	chr20	34011047	34011048	rs224322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	GDF5OS	rs224322-G	NR	7E-19		0.027417	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	34011047	34011048	rs224322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5OS	rs224322-G	NR	4E-51		0.0504785	[0.044-0.057] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34011965	34011966	rs137874109	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5OS	rs137874109-G	NR	9E-18		0.052775	[0.041-0.065] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34011965	34011966	rs137874109	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	GDF5OS	rs137874109-T	0.9285	2E-9		0.0802	[0.054-0.106] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
844	chr20	34012132	34012133	rs61478278	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5OS	rs61478278-T	NR	2E-11		0.0404052	[0.029-0.052] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34017943	34017944	rs6087709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q11.22		rs6087709-?	NR	4E-9				NR [~ 8900000] (imputed)	N
844	chr20	34017943	34017944	rs6087709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q11.22		rs6087709-?	NR	3E-8				NR [~ 8900000] (imputed)	N
844	chr20	34019578	34019579	rs224329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q11.22		rs224329-T	0.37	2E-52		15.22	z score increase	Affymetrix [9061022] (imputed)	N
844	chr20	34019578	34019579	rs224329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q11.22		rs224329-T	0.37	8E-33		11.93	z score increase	Affymetrix [9061022] (imputed)	N
844	chr20	34019578	34019579	rs224329	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	20q11.22	TNS1	rs224329-?		9E-11				NR [7428630] (imputed)	N
844	chr20	34019578	34019579	rs224329	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs224329-?	NR	2E-13		0.04377364	[0.032-0.055] unit increase	Illumina [34656550] (imputed)	N
844	chr20	34019578	34019579	rs224329	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	20q11.22	GDF5	rs224329-T	0.3	2E-30		0.064	[0.05-0.078] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
844	chr20	34022386	34022387	rs224331	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	20q11.22		rs224331-?	NR	2E-10				NR [9705931] (imputed)	N
844	chr20	34022386	34022387	rs224331	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q11.22	FAM83C, UQCC1, GDF5OS, GDF5, CEP250, C20orf173, ERGIC3, SPAG4	rs224331-?		4E-19				NR [7428630] (imputed)	N
844	chr20	34022386	34022387	rs224331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q11.22	NR	rs224331-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
844	chr20	34022386	34022387	rs224331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q11.22	NR	rs224331-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
844	chr20	34022386	34022387	rs224331	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	20q11.22	GDF5	rs224331-A	0.6406	6E-12		0.0247	[0.018-0.032] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	34022386	34022387	rs224331	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	20q11.22	GDF5	rs224331-A	0.6448	2E-10		0.024	[0.017-0.031] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	34022386	34022387	rs224331	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	20q11.22	GDF5	rs224331-A	0.6436	2E-11		0.0173	[0.012-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	34022386	34022387	rs224331	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	20q11.22	GDF5	rs224331-A	0.6473	2E-10		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
844	chr20	34023961	34023962	rs224333	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	20q11.22	GDF5	rs224333-A	0.858	3E-8	(AA)	0.055	[0.035-0.075] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
844	chr20	34023961	34023962	rs224333	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	20q11.22	GDF5	rs224333-A		2E-114				Affymetrix, Illumina [17972582] (imputed)	N
844	chr20	34023961	34023962	rs224333	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs224333-?	NR	2E-18		0.05812973	[0.045-0.071] unit increase	Illumina [34656550] (imputed)	N
844	chr20	34023961	34023962	rs224333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q11.22	GDF5	rs224333-G	0.6269	8E-10	(EA)	0.029	[0.02-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	34023961	34023962	rs224333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q11.22	GDF5	rs224333-G	0.6244000000000001	3E-11	(EA, men)	0.0459	[0.032-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	34023961	34023962	rs224333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q11.22	GDF5	rs224333-?	0.6269	5E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	34023961	34023962	rs224333	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q11.22	GDF5	rs224333-?	0.6269	2E-10	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
844	chr20	34023961	34023962	rs224333	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs224333-G	0.6232	3E-8	(EA)	0.0202	[0.013-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34023961	34023962	rs224333	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs224333-G	0.6216	9E-12	(EA, men)	0.0359	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34023961	34023962	rs224333	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs224333-G	0.6119	1E-12	(men)	0.0363	[0.026-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34023961	34023962	rs224333	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs224333-G	0.6102	7E-9		0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34023961	34023962	rs224333	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.22	GDF5	rs224333-A	0.36	8E-37		1.31	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
844	chr20	34025755	34025756	rs143384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q11.22		rs143384-G	NR	3E-57		0.0281	[0.025-0.032] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
844	chr20	34025755	34025756	rs143384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q11.22		rs143384-G	NR	3E-379		0.0573	[0.055-0.06] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
844	chr20	34025755	34025756	rs143384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q11.22		rs143384-G	0.226816	7E-65		0.0408189	[0.036-0.046] unit increase	Illumina [13479295] (imputed)	N
844	chr20	34025755	34025756	rs143384	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	20q11.22		rs143384-A	0.5908	1E-23		1.0748703	[1.059808529-1.090146118]	Affymetrix, Illumina [NR] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5	rs143384-G	NR	3E-28		0.0350107	[0.029-0.041] unit decrease	Affymetrix [323858] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	GDF5	rs143384-G	NR	6E-23		0.0313206	[0.025-0.038] unit decrease	Affymetrix [127266] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.22	GDF5	rs143384-G	NR	5E-9		0.0170498	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	GDF5	rs143384-G	NR	9E-43		0.0395206	[0.034-0.045] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5	rs143384-G	NR	1E-92		0.0637104	[0.058-0.07] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34025755	34025756	rs143384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q11.22	GDF5	rs143384-G	NR	2E-13		0.0231	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
844	chr20	34025755	34025756	rs143384	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	20q11.22	GDF5	rs143384-A	0.5912	4E-13		0.0545	[0.04-0.069] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
844	chr20	34025755	34025756	rs143384	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	34,589 European ancestry female cases, 100,879 European ancestry female controls	NA	20q11.22	GDF5	rs143384-A	0.59	6E-13		0.0657	unit increase	Affymetrix, Illumina [9449805] (imputed)	N
844	chr20	34025755	34025756	rs143384	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	20q11.22	GDF5	rs143384-A	NR	2E-9		0.0075925	[0.0051-0.0101] unit decrease	Affymetrix [10061374] (imputed)	N
844	chr20	34025755	34025756	rs143384	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.22	GDF5	rs143384-A	0.5962	7E-319		0.0725	[0.069-0.076] unit decrease	Affymetrix [18391927] (imputed)	N
844	chr20	34025755	34025756	rs143384	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20q11.22	SND1, LRRC4	rs143384-?		2E-10				NR [7428630] (imputed)	N
844	chr20	34025755	34025756	rs143384	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs143384-G	0.401718	6E-23		0.0972387	[0.078-0.117] unit increase	Affymetrix [21375087] (imputed)	N
844	chr20	34025755	34025756	rs143384	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs143384-G	0.404718	4E-47		0.0988636	[0.085-0.112] unit increase	Affymetrix [17914406] (imputed)	N
844	chr20	34025755	34025756	rs143384	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q11.22	NR	rs143384-?	NR	2E-8	(left entorhinal)			NR [9227495] (imputed)	N
844	chr20	34025755	34025756	rs143384	31482140	Meng W	2019-08-28	Commun Biol	Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank.	Knee pain	22,204 British ancestry cases, 149,312 British ancestry controls	NA	20q11.22	GDF5	rs143384-A	0.6	1E-12		0.008	NR unit decrease	Affymetrix [15377520] (imputed)	N
844	chr20	34025755	34025756	rs143384	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	20q11.22	NR	rs143384-?	NR	5E-21		0.06231587	[0.049-0.075] unit increase	Illumina [34656550] (imputed)	N
844	chr20	34025755	34025756	rs143384	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Trochanter size	28,944 European ancestry individuals	8,065 European ancestry individuals, 5,711 East Asian ancestry individuals	20q11.22	GDF5	rs143384-G	0.37	1E-18		0.071	[0.055-0.086] unit increase	Illumina [33400000] (imputed)	N
844	chr20	34025755	34025756	rs143384	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Spine bone size	29,059 European ancestry individuals	14,932 European ancestry individuals, 6,345 East Asian ancestry individuals	20q11.22	GDF5	rs143384-G	0.37	4E-21		0.063	[0.050-0.076] unit increase	Illumina [33400000] (imputed)	N
844	chr20	34025755	34025756	rs143384	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	20q11.22	GDF5	rs143384-G	0.36977	1E-9		0.05	NR unit increase	Illumina [33400000] (imputed)	N
844	chr20	34025755	34025756	rs143384	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	20q11.22	GDF5	rs143384-G	0.37	2E-22		0.071	[0.057-0.086] unit increase	Illumina [33400000] (imputed)	N
844	chr20	34025755	34025756	rs143384	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Femoral neck size	28,954 European ancestry individuals	9,383 European ancestry individuals, 6,351 East Asian ancestry individuals	20q11.22	GDF5	rs143384-G	0.36977	3E-10		0.046	NR unit increase	Illumina [33400000] (imputed)	N
844	chr20	34025755	34025756	rs143384	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	20q11.22	UQCC1	rs143384-A	0.5964	1E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix [19819130] (imputed)	N
844	chr20	34025755	34025756	rs143384	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20q11.22	UQCC1	rs143384-A	0.5964	1E-23		0.0239	[0.019-0.029] unit increase	Affymetrix [19819130] (imputed)	N
844	chr20	34025755	34025756	rs143384	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20q11.22	UQCC1	rs143384-A	0.5964	4E-12		0.0165	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	20q11.22	NR	rs143384-A	0.6	5E-23		1.1	[1.08-1.12]	Affymetrix, Illumina [up to 17000000] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20q11.22	EIF6, FAM83C, GDF5, MMP24, UQCC	rs143384-G	0.417618	6E-38		0.02963	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20q11.22	EIF6, FAM83C, GDF5, MMP24, UQCC	rs143384-G	0.417618	4E-48	(females)	0.04729	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20q11.22	EIF6, FAM83C, GDF5, MMP24, UQCC	rs143384-G	0.417618	3E-9	(males)	0.01716	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20q11.22	EIF6, FAM83C, GDF5, MMP24, UQCC	rs143384-G	0.417618	3E-43		0.03139	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
844	chr20	34025755	34025756	rs143384	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	20q11.22	EIF6, FAM83C, GDF5, MMP24, UQCC	rs143384-G	0.417618	1E-40	(females)	0.04352	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
844	chr20	34025755	34025756	rs143384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q11.22		rs143384-?	NR	3E-21				NR [~ 8900000] (imputed)	N
844	chr20	34025755	34025756	rs143384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q11.22		rs143384-?	NR	2E-38				NR [~ 8900000] (imputed)	N
844	chr20	34025755	34025756	rs143384	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q11.22	NR	rs143384-?	NR	7E-21	(female)	0.22962	[0.18-0.28] unit increase	Affymetrix [7794483] (imputed)	N
844	chr20	34025755	34025756	rs143384	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q11.22	NR	rs143384-?	NR	6E-68		0.38971	[0.35-0.43] unit increase	Affymetrix [7794483] (imputed)	N
844	chr20	34025755	34025756	rs143384	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q11.22	NR	rs143384-?	NR	2E-49	(male)	0.52142	[0.45-0.59] unit increase	Affymetrix [7794483] (imputed)	N
844	chr20	34025755	34025756	rs143384	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	20q11.22	NR	rs143384-A	0.6	2E-27		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
844	chr20	34025755	34025756	rs143384	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	20q11.22	NR	rs143384-A	0.6	5E-8				Affymetrix [2446094] (imputed)	N
844	chr20	34025755	34025756	rs143384	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	20q11.22	GDF5	rs143384-A	NR	1E-19		1.1	[1.07-1.12]	Affymetrix, Illumina [11554240] (imputed)	N
844	chr20	34025755	34025756	rs143384	30273415	Hatzikotoulas K	2018-05-31	Commun Biol	Genome-wide association study of developmental dysplasia of the hip identifies an association with GDF5.	Developmental dysplasia of the hip	770 European ancestry cases, 3,364 European ancestry controls	1,129 European ancestry cases, 4,652 European ancestry controls	20q11.22	NR	rs143384-A	0.60	4E-22		1.44	[1.34-1.56]	Illumina [256867]	N
844	chr20	34025755	34025756	rs143384	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	20q11.22	GDF5, GDF5OS	rs143384-?		1E-170				Illumina [9499600] (imputed)	N
844	chr20	34025755	34025756	rs143384	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	20q11.22	GDF5, GDF5OS	rs143384-G	0.403	9E-292	(height)	0.06411	[0.061-0.068] unit increase	Illumina [9499600] (imputed)	N
844	chr20	34025755	34025756	rs143384	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q11.22	GDF5	rs143384-A	0.5721	2E-10		0.0414	[0.029-0.054] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
844	chr20	34025755	34025756	rs143384	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20q11.22	GDF5	rs143384-A	0.5714	3E-7		0.0422	[0.026-0.058] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
844	chr20	34025755	34025756	rs143384	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	GDF5	rs143384-A	0.5722	4E-36		0.0816	[0.069-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
844	chr20	34025755	34025756	rs143384	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	20q11.22	GDF5	rs143384-?	NR	1E-12		0.079	[0.100-0.057] unit decrease	Illumina [12039492] (imputed)	N
844	chr20	34025755	34025756	rs143384	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs143384-A	0.5668	5E-21	(EA,men)	0.0505	[0.04-0.061] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34025755	34025756	rs143384	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs143384-A	0.5668	3E-16	(EA, women)	0.0396	[0.03-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34025755	34025756	rs143384	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs143384-A	0.5668	1E-31	(EA)	0.0439	[0.036-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34025755	34025756	rs143384	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs143384-A	0.5666	4E-12	(EA)	0.0262	[0.019-0.034] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34025755	34025756	rs143384	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.22	GDF5	rs143384-A	0.5666	4E-11	(EA, men)	0.0339	[0.024-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
844	chr20	34025755	34025756	rs143384	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20q11.22	GDF5	rs143384-A	0.576	1E-121		0.075	[0.016-0.134] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
844	chr20	34025755	34025756	rs143384	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	20q11.22	GDF5	rs143384-G	0.44	3E-10		0.058	[0.040-0.076] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
844	chr20	34025755	34025756	rs143384	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q11.22	GDF5	rs143384-A	0.58	1E-58		0.063	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
844	chr20	34025982	34025983	rs143383	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q11.22		rs143383-G	0.37	2E-16		8.25	z score increase	Affymetrix [9061022] (imputed)	N
844	chr20	34025982	34025983	rs143383	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q11.22	NR	rs143383-G	0.3608	1E-17				NR [9056863] (imputed)	N
844	chr20	34025982	34025983	rs143383	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	20q11.22	GDF5	rs143383-?	NR	1E-9		0.48	[0.32-0.64] unit increase	Affymetrix [5682219] (imputed)	N
844	chr20	34025982	34025983	rs143383	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q11.22	GDF5	rs143383-?	NR	9E-78		0.06367727	[0.057-0.07] unit increase	Illumina [27896057] (imputed)	N
844	chr20	34025982	34025983	rs143383	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Knee osteoarthritis	24,955 European ancestry cases, 378,169 European ancestry controls	NA	20q11.22	GDF5	rs143383-?	NR	5E-7		1.0495905	[1.03-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
844	chr20	34025982	34025983	rs143383	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	20q11.22	NR	rs143383-T	0.64	8E-18		1.09287	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
844	chr20	34029881	34029882	rs6120946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	GDF5	rs6120946-T	NR	1E-13		0.0257525	[0.019-0.033] unit increase	Affymetrix [321016] (imputed)	N
844	chr20	34029881	34029882	rs6120946	31482140	Meng W	2019-08-28	Commun Biol	Genome-wide association study of knee pain identifies associations with GDF5 and COL27A1 in UK Biobank.	Knee pain	22,204 British ancestry cases, 149,312 British ancestry controls	NA	20q11.22	GDF5	rs6120946-A	0.782	7E-9		0.008	NR unit decrease	Affymetrix [15377520] (imputed)	N
844	chr20	34030424	34030425	rs34414056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5	rs34414056-T	NR	1E-9		0.0233753	[0.016-0.031] unit decrease	Affymetrix [323858] (imputed)	N
844	chr20	34030424	34030425	rs34414056	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q11.22	GDF5	rs34414056-T	NR	5E-8		0.0209561	[0.013-0.028] unit decrease	Affymetrix [127266] (imputed)	N
844	chr20	34030424	34030425	rs34414056	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs34414056-T	0.215407	7E-9		0.0690488	[0.046-0.092] unit increase	Affymetrix [21375087] (imputed)	N
844	chr20	34030605	34030606	rs34298551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5	rs34298551-A	NR	2E-37		0.0485588	[0.041-0.056] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34031309	34031309	rs139252705	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	GDF5	rs139252705-GATTATT	NR	1E-10		0.0410027	[0.029-0.053] unit increase	Affymetrix [323123] (imputed)	N
844	chr20	34039393	34039394	rs6119609	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	20q11.22	GDF5-CEP250	rs6119609-?	NR	3E-8		0.44	[0.28-0.6] unit increase	Affymetrix [5682219] (imputed)	N
844	chr20	34062709	34062710	rs224363	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	20q11.22	CEP250	rs224363-?	NR	3E-8		0.44	[0.28-0.6] unit increase	Affymetrix [5682219] (imputed)	N
844	chr20	34065087	34065088	rs148847980	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	13,137 European ancestry individuals	2,451 European ancestry individuals	20q11.22	NR	rs148847980-A	0.9779	6E-8		0.2175	[0.14-0.30] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
845	chr20	34097352	34097353	rs2236164	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	20q11.22	CEP250	rs2236164-T	0.7	3E-24		0.053	[0.039-0.067] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
845	chr20	34097352	34097353	rs2236164	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	20q11.22	UQCC, GDF5	rs2236164-C	0.22	2E-6		0.06	[0.04-0.08] cm increase	Illumina [420885]	N
845	chr20	34108072	34108073	rs73283804	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	RP3-477O4.5	rs73283804-A	NR	4E-16		0.0346811	[0.026-0.043] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34125270	34125271	rs6579245	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs6579245-C	NR	5E-8		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34125270	34125271	rs6579245	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs6579245-C	0.85	3E-8	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34125270	34125271	rs6579245	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs6579245-C	0.85	9E-6	(EA)	0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34125270	34125271	rs6579245	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	20q11.22	ERGIC3	rs6579245-C	0.89	1E-8		0.054	[0.036-0.072] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
845	chr20	34126826	34126827	rs6120974	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	20q11.22	ERGIC3	rs6120974-T	0.89	2E-8		0.055	[0.035-0.075] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
845	chr20	34127335	34127336	rs762537139	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	ERGIC3	rs762537139-AT	NR	4E-11		0.0435576	[0.031-0.056] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34131395	34131396	rs12481365	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.22	ERGIC3	rs12481365-T	0.1592	2E-19		0.032	[0.025-0.039] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
845	chr20	34137544	34137545	rs140847108	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	ERGIC3	rs140847108-A	NR	6E-16		0.0504101	[0.038-0.063] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34138475	34138476	rs117248227	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20q11.22	ERGIC3	rs117248227-A	0.0065	4E-7		0.2995	[0.18-0.42] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
845	chr20	34142256	34142257	rs60267524	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20q11.22		rs60267524-T	NR	3E-20		0.0259	[0.02-0.031] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
845	chr20	34143277	34143278	rs3790136	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs3790136-A	NR	5E-10		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34143277	34143278	rs3790136	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs3790136-A	0.836	4E-10	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34143277	34143278	rs3790136	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs3790136-A	NR	7E-7		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34143277	34143278	rs3790136	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs3790136-A	0.836	9E-7	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34145709	34145709	rs71909504	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	ERGIC3	rs71909504-CTAA	0.078	2E-7		0.0697	[0.044-0.096] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
845	chr20	34146754	34146755	rs117085232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs117085232-?	NR	1E-14				NR [~ 8900000] (imputed)	N
845	chr20	34147629	34147630	rs1010759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20q11.22		rs1010759-A	NR	1E-15		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
845	chr20	34147997	34147998	rs224424	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q11.22	ERGIC3	rs224424-A	0.787576	3E-16		0.0209096	[0.016-0.026] unit increase	Affymetrix [NR] (imputed)	N
845	chr20	34147997	34147998	rs224424	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q11.22	ERGIC3	rs224424-A	0.787628	4E-14		0.019229	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
845	chr20	34148692	34148693	rs77480718	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q11.22	NR	rs77480718-G	NR	2E-10		0.0313	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
845	chr20	34150206	34150207	rs2378390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q11.22		rs2378390-G	0.859133	2E-8		0.0322928	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
845	chr20	34150206	34150207	rs2378390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	20q11.22		rs2378390-G	0.859133	1E-8		0.0332858	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
845	chr20	34150206	34150207	rs2378390	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	20q11.22		rs2378390-G	0.859133	3E-8		0.0323049	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
845	chr20	34152781	34152782	rs2277862	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs2277862-C	NR	3E-8		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34152781	34152782	rs2277862	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q11.22	NR	rs2277862-C	0.846	2E-8	(EA)	0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
845	chr20	34152781	34152782	rs2277862	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q11.22	ERGIC3	rs2277862-T	0.15	5E-11		0.035	[NR] unit decrease	NR [NR] (imputed)	N
845	chr20	34152781	34152782	rs2277862	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q11.22	ERGIC3	rs2277862-T	0.15	4E-10		1.19	[0.66-1.72] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
845	chr20	34154740	34154741	rs7264396	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	20q11.22	ERGIC3	rs7264396-T	0.219	4E-12	(Trans-ethnic initial)	0.0313	[0.023-0.04] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
845	chr20	34158586	34158587	rs12625762	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	20q11.22		rs12625762-A	0.14	1E-9		0.0761	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
845	chr20	34159129	34159129	rs56054421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FER1L4	rs56054421-AG	NR	4E-14		0.0451437	[0.033-0.057] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34166099	34166100	rs6088882	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q11.22	FER1L4	rs6088882-C	0.2007	8E-14		0.025	[0.019-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
845	chr20	34170173	34170174	rs6119628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs6119628-C	NR	3E-8		0.0176588	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34170173	34170174	rs6119628	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FER1L4	rs6119628-C	NR	5E-18		0.0298497	[0.023-0.037] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34170173	34170174	rs6119628	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q11.22	NR	rs6119628-A	0.717358	1E-10		0.013178	[0.0092-0.0172] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
845	chr20	34170173	34170174	rs6119628	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	20q11.22	NR	rs6119628-A		1E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
845	chr20	34171323	34171324	rs6088887	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FER1L4	rs6088887-A	NR	7E-11		0.0262385	[0.018-0.034] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34174091	34174092	rs6142416	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs6142416-G	0.748524	7E-10		0.0667026	[0.045-0.089] unit decrease	Affymetrix [21375087] (imputed)	N
845	chr20	34175351	34175352	rs77699644	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs77699644-C	NR	1E-10		0.0352864	[0.025-0.046] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34175416	34175417	rs6088889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs6088889-C	NR	4E-9		0.023264	[0.016-0.031] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34175416	34175417	rs6088889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FER1L4	rs6088889-C	NR	7E-16		0.0345449	[0.026-0.043] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34180052	34180053	rs147407273	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs147407273-T	NR	7E-9		0.0527364	[0.035-0.071] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34183478	34183479	rs57545942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.22	FER1L4	rs57545942-T	NR	2E-8		0.0232179	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
845	chr20	34183478	34183479	rs57545942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs57545942-T	NR	9E-15		0.0317865	[0.024-0.04] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34183478	34183479	rs57545942	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.22	FER1L4	rs57545942-T	0.1556	8E-9		0.051	[0.034-0.068] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
845	chr20	34185160	34185161	rs6120993	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q11.22	GDF5, CEP250, ERGIC3, FER1L4, SPAG4, CPNE1, RBM12, NFS1, ROMO1, RBM39, PHF20, SCAND1, CNBD2, EPB41L1, AAR2, SOGA1	rs6120993-?		2E-20				Affymetrix, Illumina [NR] (imputed)	N
845	chr20	34185160	34185161	rs6120993	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q11.22	FER1L4	rs6120993-T	NR	4E-8		5.496	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
845	chr20	34186952	34186953	rs6120997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	FER1L4	rs6120997-C	NR	4E-10		0.0185414	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
845	chr20	34186952	34186953	rs6120997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	FER1L4	rs6120997-C	NR	4E-11		0.0212015	[0.015-0.027] unit increase	Affymetrix [323123] (imputed)	N
845	chr20	34190698	34190699	rs738703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q11.22	NR	rs738703-T	NR	3E-15		0.02	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
845	chr20	34190698	34190699	rs738703	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q11.22	NR	rs738703-T	NR	3E-11		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
845	chr20	34194242	34194243	rs761826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.22	NR	rs761826-G	0.204959	6E-11				Affymetrix, Illumina [24588908] (imputed)	N
845	chr20	34199976	34199977	rs143646210	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPNE1	5,350 Icelandic ancestry individuals	NA	20q11.22		rs143646210-A	0.09839	2E-295		1.02484	[0.97-1.08] unit decrease	Illumina [7506463] (imputed)	N
845	chr20	34204554	34204555	rs753827512	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs753827512-C	0.195844	3E-14		0.0930868	[0.068-0.118] unit increase	Affymetrix [21375087] (imputed)	N
845	chr20	34208556	34208556	rs10668654	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.22	NR	rs10668654-GCC	0.065	1E-98	(Copine-1, CPNE1.5346.24.3)	1.08	[0.98-1.18] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr20	34211778	34211779	rs6060515	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q11.22	Intergenic	rs6060515-A	0.8243	3E-8	(MTAG)	0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
846	chr20	34214172	34214173	rs11543239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	CPNE1	rs11543239-A	NR	4E-8		0.0411152	[0.026-0.056] unit increase	Affymetrix [323123] (imputed)	N
846	chr20	34214722	34214723	rs2425068	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.22	NR	rs2425068-C	0.061	9E-24	(Copine-1, CPNE1.5346.24.3)	0.51	[0.41-0.61] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr20	34216057	34216058	rs6142422	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs6142422-C	NR	7E-173		0.428	[0.27-0.59] unit increase	Affymetrix [8351141] (imputed)	N
846	chr20	34218672	34218673	rs12481228	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.22	CPNE1	rs12481228-C	0.098	2E-146	(Copine-1, CPNE1.5346.24.3)	0.98	[0.9-1.06] unit decrease	Affymetrix [10572788] (imputed)	N
846	chr20	34219989	34219990	rs78084033	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q11.22	NR	rs78084033-A	NR	2E-8		5.649	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
846	chr20	34219993	34219994	rs10211771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	CPNE1	rs10211771-C	NR	5E-29		0.0460085	[0.038-0.054] unit increase	Affymetrix [323123] (imputed)	N
846	chr20	34234799	34234800	rs12480408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.22	NR	rs12480408-G	0.0979149	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
846	chr20	34248133	34248134	rs11698796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	20q11.22		rs11698796-T	0.871059	3E-8		0.0335314	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
846	chr20	34248133	34248134	rs11698796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q11.22		rs11698796-T	0.871059	1E-8		0.0345407	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
846	chr20	34248133	34248134	rs11698796	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q11.22		rs11698796-T	0.871059	5E-9		0.0354145	[0.024-0.047] unit increase	NR [11722792] (imputed)	N
846	chr20	34257283	34257284	rs7267759	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	RP1-309K20.6, NFS1	rs7267759-T	NR	1E-15		0.0412937	[0.031-0.051] unit increase	Affymetrix [323123] (imputed)	N
846	chr20	34257283	34257284	rs7267759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q11.22	NR	rs7267759-T	0.100198	9E-13		0.022555	[0.016-0.029] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
846	chr20	34260248	34260249	rs116886776	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	RP1-309K20.6, NFS1	rs116886776-A	NR	1E-11		0.0525488	[0.037-0.068] unit increase	Affymetrix [323123] (imputed)	N
846	chr20	34266469	34266470	rs7268897	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	20q11.22		rs7268897-?	NR	7E-6	(MLM)	0.4867662	[0.27-0.7] unit increase	Illumina [~ 9000000] (imputed)	N
846	chr20	34266469	34266470	rs7268897	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	20q11.22		rs7268897-?	NR	8E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
846	chr20	34269390	34269391	rs2425070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.22	NFS1	rs2425070-A	NR	5E-9		0.0343812	[0.023-0.046] unit decrease	Affymetrix [323123] (imputed)	N
846	chr20	34269390	34269391	rs2425070	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.22	NR	rs2425070-G	NR	3E-9		1.22053	[1.14265-1.30372]	Affymetrix [5734850] (imputed)	N
846	chr20	34282052	34282053	rs6060562	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q11.22	NR	rs6060562-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
846	chr20	34290280	34290281	rs6058303	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	20q11.22	NR	rs6058303-?	NR	1E-11	(CPNE1)			Illumina [~ 4000000] (imputed)	N
846	chr20	34300386	34300387	rs143876112	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	High density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	20q11.22		rs143876112-C	0.34	4E-7		0.51	[0.37-0.83] unit decrease	Illumina [19468843] (imputed)	N
846	chr20	34301588	34301588	rs532201406	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.22	NR	rs532201406-CAAAAA	0.267717	1E-13		0.0842066	[0.062-0.106] unit increase	Affymetrix [21375087] (imputed)	N
846	chr20	34301588	34301588	rs532201406	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.22	NR	rs532201406-CAAAAA	0.266871	2E-22		0.0768246	[0.061-0.092] unit increase	Affymetrix [17914406] (imputed)	N
846	chr20	34305444	34305445	rs6060578	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.22	CPNE1	rs6060578-C	0.89953125	5E-157	(CPNE1, 5346_24_3)	1.0387857	[0.97-1.11] unit increase	Illumina [> 1000000] (imputed)	N
846	chr20	34318398	34318399	rs183672138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.22		rs183672138-?	NR	3E-10				NR [~ 8900000] (imputed)	N
847	chr20	34345773	34345774	rs145688925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.22	RPF2P1	rs145688925-G	NR	2E-9		0.0513059	[0.035-0.068] unit increase	Affymetrix [321016] (imputed)	N
847	chr20	34350305	34350306	rs7273174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q11.22		rs7273174-C	0.109637	4E-10		0.02232549	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
847	chr20	34350665	34350666	rs2425143	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20q11.22	CPNE1, FER1L4, RBM39, SCAND1, PHF20, SPAG4, RBM12, NFS1, ROMO1, RP1-309K20.6, RN7SKP271, RNU6-759P, RPF2P1, COX7BP2, Y_RNA, HIGD1AP16, RNU4-40P, RNU6-937P, CNBD2	rs2425143-T	0.1048144	4E-73	(Copine-1)	1.206	[1.09-1.33] unit decrease	Affymetrix [509946]	N
847	chr20	34351617	34351618	rs112043138	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.22	NR	rs112043138-A	NR	2E-136		0.363	[0.22-0.51] unit increase	Affymetrix [8351141] (imputed)	N
847	chr20	34355768	34355769	rs548220206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q11.22		rs548220206-A	NR	4E-10		0.0913	[0.063-0.12] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
847	chr20	34383633	34383634	rs11906854	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	20q11.22	intergenic	rs11906854-G	0.14	7E-6		1.17	[1.09-1.26]	Affymetrix, Illumina [~ 2300000] (imputed)	N
847	chr20	34390526	34390527	rs6060612	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.23	NR	rs6060612-G	NR	2E-6		1.15144	[1.08712-1.21956]	Affymetrix [5734850] (imputed)	N
847	chr20	34395193	34395194	rs73095513	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPNE1	5,350 Icelandic ancestry individuals	NA	20q11.23		rs73095513-A	0.02572	5E-28		0.62829	[0.52-0.74] unit decrease	Illumina [7506463] (imputed)	N
847	chr20	34398303	34398304	rs116907394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs116907394-?	NR	4E-10				NR [~ 8900000] (imputed)	N
847	chr20	34415577	34415578	rs112103450	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q11.23		rs112103450-T	0.870529	2E-8		0.0338104	[0.022-0.046] unit increase	NR [11722792] (imputed)	N
847	chr20	34417995	34417996	rs2425156	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q11.23	PHF20	rs2425156-C	0.157104	9E-12		0.021037223	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
847	chr20	34419082	34419083	rs2425157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs2425157-C	0.153539	2E-15				Affymetrix, Illumina [17210439] (imputed)	N
847	chr20	34419082	34419083	rs2425157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q11.23	NR	rs2425157-C	0.14417	5E-16		0.023389	[0.018-0.029] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
847	chr20	34426746	34426746	rs11443640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.23	PHF20	rs11443640-CA	NR	1E-11		0.0264604	[0.019-0.034] unit increase	Affymetrix [321114] (imputed)	N
847	chr20	34426746	34426746	rs11443640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.23	PHF20	rs11443640-CA	NR	7E-14		0.0288762	[0.021-0.036] unit increase	Affymetrix [321016] (imputed)	N
847	chr20	34427191	34427192	rs2425161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q11.23	PHF20	rs2425161-A	NR	1E-9		6.095	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
847	chr20	34427582	34427583	rs11697087	32047268	von Berg J	2020-02-11	Eur J Hum Genet	Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke.	Cardioembolic stroke (CCS and TOAST classification)	2,219 European and African ancestry cases, 28,026 European and unknown ancestry controls	NA	20q11.23	PFH20	rs11697087-?	NR	3E-9		1.26	NR	Illumina [~ 10156805] (imputed)	N
847	chr20	34432669	34432670	rs2425163	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20q11.23	PHF20	rs2425163-A	0.82	3E-52		0.058	[0.05-0.066] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
847	chr20	34441767	34441768	rs111811202	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	PHF20	rs111811202-T	NR	3E-9		0.0417066	[0.028-0.055] unit increase	Affymetrix [323123] (imputed)	N
847	chr20	34460478	34460479	rs6058339	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs6058339-?	NR	1E-19		1.15876	[1.13-1.19]	NR [685523]	N
847	chr20	34460478	34460479	rs6058339	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.23		rs6058339-?	NR	3E-10		1.0689	[1.05-1.09]	NR [688737]	N
847	chr20	34461027	34461027	rs113938713	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.23	NR	rs113938713-AT	0.181056	1E-9		0.0779305	[0.052-0.104] unit increase	Affymetrix [21375087] (imputed)	N
848	chr20	34476301	34476302	rs2378412	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.23	PHF20	rs2378412-C	0.896	9E-6		0.0479	[0.027-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
848	chr20	34477168	34477169	rs7266028	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs7266028-C	0.177891	9E-21		0.083952	[0.066-0.102] unit increase	Affymetrix [17914406] (imputed)	N
848	chr20	34489564	34489565	rs7267005	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	20q11.23		rs7267005-?	NR	4E-6	(MLM)			Illumina [~ 9000000] (imputed)	N
848	chr20	34494456	34494457	rs117496573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs117496573-?	NR	8E-24				NR [~ 8900000] (imputed)	N
848	chr20	34501091	34501092	rs17093238	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	20q11.23		rs17093238-A	NR	2E-6	(GLM)	8.986	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
848	chr20	34501091	34501092	rs17093238	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	20q11.23		rs17093238-?	NR	2E-6	(MLM)	0.5214499	[0.31-0.74] unit increase	Illumina [~ 9000000] (imputed)	N
848	chr20	34521027	34521028	rs201177249	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20q11.23	NR	rs201177249-C	0.1351	4E-6	(EA)	0.0462	[0.027-0.066] unit increase	Illumina [~ 11800000] (imputed)	N
848	chr20	34544646	34544647	rs6060717	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.23	SCAND1	rs6060717-T	0.8225	8E-7	(EA,men)	0.0332	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
848	chr20	34544646	34544647	rs6060717	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.23	SCAND1	rs6060717-T	0.8225	6E-12	(EA)	0.0323	[0.023-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
848	chr20	34544646	34544647	rs6060717	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.23	SCAND1	rs6060717-T	0.8225	1E-7	(EA, women)	0.0314	[0.02-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
848	chr20	34545494	34545495	rs4911523	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.23	NR	rs4911523-G	NR	1E-7		1.18768	[1.11454-1.26563]	Affymetrix [5734850] (imputed)	N
848	chr20	34563383	34563384	rs55783707	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.23	CNBD2	rs55783707-A	0.1099	8E-22		0.0308	[0.025-0.037] unit increase	Affymetrix [18391927] (imputed)	N
848	chr20	34569141	34569142	rs2064725	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q11.23	NR	rs2064725-?	NR	7E-8		5.403	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
848	chr20	34596370	34596371	rs6060750	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs6060750-T	0.181145	2E-18		0.0762845	[0.059-0.094] unit increase	Affymetrix [17914406] (imputed)	N
849	chr20	34610255	34610256	rs6141590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	CNBD2	rs6141590-G	NR	3E-17		0.0348088	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
849	chr20	34638902	34638903	rs1204552	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.23		rs1204552-A	NR	3E-19		1.340303	NR	Affymetrix [7846216] (imputed)	N
849	chr20	34638902	34638903	rs1204552	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q11.23		rs1204552-A	NR	7E-15		1.3210039	[1.23-1.42]	Affymetrix [7846216] (imputed)	N
849	chr20	34638902	34638903	rs1204552	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs1204552-A	NR	4E-146		0.408	[0.25-0.56] unit increase	Affymetrix [8351141] (imputed)	N
849	chr20	34646011	34646012	rs2746089	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.23	NR	rs2746089-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
849	chr20	34646797	34646798	rs2889898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.23	LINC00657	rs2889898-C	NR	1E-8		0.0210815	[0.014-0.028] unit increase	Affymetrix [321016] (imputed)	N
849	chr20	34671178	34671179	rs2590990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.23	RP4-550H1.4	rs2590990-G	NR	3E-9		0.0199441	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
849	chr20	34671178	34671179	rs2590990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	RP4-550H1.4	rs2590990-G	NR	3E-22		0.0348824	[0.028-0.042] unit increase	Affymetrix [323123] (imputed)	N
849	chr20	34671178	34671179	rs2590990	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.23	RP4-550H1.4	rs2590990-A	0.7484	2E-12		0.0516	[0.037-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
849	chr20	34703059	34703060	rs2247732	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.23	NR	rs2247732-?	NR	6E-7				Affymetrix [NR]	N
849	chr20	34711091	34711092	rs140604942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs140604942-?	NR	9E-43				NR [~ 8900000] (imputed)	N
849	chr20	34712309	34712310	rs6141600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.23	EPB41L1	rs6141600-C	NR	5E-9		0.0188051	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
849	chr20	34712309	34712310	rs6141600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.23	EPB41L1	rs6141600-C	NR	2E-8		0.0180369	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
849	chr20	34712309	34712310	rs6141600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	EPB41L1	rs6141600-C	NR	9E-26		0.0363967	[0.03-0.043] unit increase	Affymetrix [323123] (imputed)	N
849	chr20	34712309	34712310	rs6141600	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.23	NR	rs6141600-C	0.271065	7E-11		0.071986	[0.05-0.094] unit increase	Affymetrix [21375087] (imputed)	N
849	chr20	34712309	34712310	rs6141600	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.23	EPB41L1	rs6141600-T	0.7169	8E-7	(EA,women)	0.0316	[0.019-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
849	chr20	34712309	34712310	rs6141600	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q11.23	EPB41L1	rs6141600-T	0.7169	1E-9	(EA)	0.0317	[0.022-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
849	chr20	34712309	34712310	rs6141600	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	20q11.23	EPB41L1	rs6141600-C	0.28	6E-12		1.21	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
849	chr20	34717717	34717718	rs1006296	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs1006296-C	0.243687	3E-12		0.0556121	[0.04-0.071] unit increase	Affymetrix [17914406] (imputed)	N
849	chr20	34726972	34726973	rs75653149	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs75653149-?	NR	4E-18		1.16978	[1.13-1.21]	NR [685523]	N
849	chr20	34726972	34726973	rs75653149	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.23		rs75653149-?	NR	1E-6		1.22592	[1.14-1.31]	NR [674885]	N
849	chr20	34726972	34726973	rs75653149	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.23		rs75653149-?	NR	2E-8		1.06928	[1.05-1.09]	NR [688737]	N
849	chr20	34726972	34726973	rs75653149	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Cancer	17,131 European ancestry cases, 39,506 European ancestry controls	NA	20q11.23		rs75653149-A	0.071283	3E-8		1.16		Affymetrix [15611556] (imputed)	N
849	chr20	34726972	34726973	rs75653149	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q11.23	EPB41L1	rs75653149-A	0.0881231	4E-20		0.16532716	[0.13-0.2] unit increase	Affymetrix [7260263] (imputed)	N
849	chr20	34726972	34726973	rs75653149	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20q11.23	EPB41L1	rs75653149-A	0.088973	6E-32		1.1904762	[1.15-1.22]	Affymetrix [7600000] (imputed)	N
849	chr20	34726972	34726973	rs75653149	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.23	NR	rs75653149-C	NR	2E-6		1.162292	[1.09-1.24]	Affymetrix [5734850] (imputed)	N
850	chr20	34734560	34734561	rs78797479	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	EPB41L1	rs78797479-C	NR	2E-8		0.0376375	[0.024-0.051] unit increase	Affymetrix [323123] (imputed)	N
850	chr20	34747807	34747808	rs6058423	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q11.23	EPB41L1	rs6058423-A	NR	4E-8		0.0174542	[0.011-0.024] unit increase	Affymetrix [321016] (imputed)	N
850	chr20	34747807	34747808	rs6058423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs6058423-?	NR	1E-41				NR [~ 8900000] (imputed)	N
850	chr20	34775550	34775551	rs2247688	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	EPB41L1	rs2247688-G	NR	2E-15		0.0287295	[0.022-0.036] unit increase	Affymetrix [323123] (imputed)	N
850	chr20	34810822	34810823	rs73103409	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	EPB41L1	rs73103409-G	NR	7E-9		0.0262444	[0.017-0.035] unit increase	Affymetrix [323123] (imputed)	N
850	chr20	34828608	34828609	rs709050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q11.23	AAR2	rs709050-A	NR	3E-8		0.0199786	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
850	chr20	34830584	34830585	rs2425192	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs2425192-A	NR	4E-87		0.269	[0.15-0.39] unit increase	Affymetrix [8351141] (imputed)	N
850	chr20	34849310	34849311	rs2104009	32690583	Cheng B	2020-07-20	G3 (Bethesda)	Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples.	Shoulder impingement syndrome	7,252 European ancestry individuals	NA	20q11.23		rs2104009-G	NR	7E-6		0.859708	[0.79-0.93] unit increase	Affymetrix [825927] (imputed)	N
850	chr20	34849681	34849682	rs12481546	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs12481546-?	NR	2E-10				NR [~ 8900000] (imputed)	N
851	chr20	34865239	34865240	rs8115222	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q11.23	C20orf4	rs8115222-G	0.015	4E-6	(Sedentary&light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
851	chr20	34865661	34865662	rs78074478	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q11.23	AAR2	rs78074478-A	NR	2E-11		0.0292035	[0.021-0.038] unit decrease	Affymetrix [323123] (imputed)	N
851	chr20	34865661	34865662	rs78074478	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs78074478-A	0.141511	2E-11		0.0651926	[0.046-0.084] unit decrease	Affymetrix [17914406] (imputed)	N
851	chr20	34865771	34865772	rs76894896	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs76894896-?	NR	1E-10		1.10188	[1.07-1.13]	NR [685523]	N
852	chr20	35002848	35002849	rs2425224	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs2425224-?	NR	2E-15		1.1617	[1.12-1.2]	NR [685523]	N
852	chr20	35002848	35002849	rs2425224	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.23		rs2425224-?	NR	7E-6		1.21604	[1.13-1.3]	NR [674885]	N
852	chr20	35002848	35002849	rs2425224	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q11.23		rs2425224-?	NR	6E-6		1.05775	[1.03-1.08]	NR [688737]	N
852	chr20	35002848	35002849	rs2425224	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs2425224-A	NR	1E-94		0.319	[0.18-0.46] unit increase	Affymetrix [8351141] (imputed)	N
852	chr20	35005686	35005687	rs2425226	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	20q11.23	DLGAP4	rs2425226-C	0.64064	6E-6		1.0795022	[1.05-1.12]	NR [NR] (imputed)	N
852	chr20	35018411	35018412	rs2425241	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs2425241-C	0.922107	1E-12		0.0902687	[0.065-0.115] unit increase	Affymetrix [17914406] (imputed)	N
852	chr20	35018411	35018412	rs2425241	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q11.23	NR	rs2425241-C	NR	2E-6		1.17268	[1.09894-1.25137]	Affymetrix [5734850] (imputed)	N
852	chr20	35023127	35023128	rs185404836	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	20q11.23	NR	rs185404836-T	0.01	1E-6		1.82	[1.58-2.06]	Illumina [8468885] (imputed)	N
852	chr20	35056571	35056572	rs2425256	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs2425256-?	NR	7E-13				NR [~ 8900000] (imputed)	N
852	chr20	35066781	35066782	rs6012384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20q11.23		rs6012384-T	NR	5E-8		0.0297	[0.019-0.04] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
852	chr20	35076181	35076182	rs144141547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs144141547-?	NR	8E-15				NR [~ 8900000] (imputed)	N
852	chr20	35077278	35077279	rs181837942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs181837942-A	0.998111	5E-12				Affymetrix, Illumina [24246363] (imputed)	N
852	chr20	35077278	35077279	rs181837942	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q11.23	NR	rs181837942-A	0.998021	5E-11		0.150707	[0.11-0.2] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
853	chr20	35179495	35179496	rs694379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q11.23		rs694379-?	NR	6E-8				NR [~ 8900000] (imputed)	N
853	chr20	35207098	35207099	rs2234085	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs2234085-?	NR	4E-9		1.08789	[1.06-1.12]	NR [685523]	N
853	chr20	35237201	35237202	rs150260898	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.23	TGIF2-RAB5IF	rs150260898-A	0.9286	1E-25		0.0391	[0.032-0.046] unit increase	Affymetrix [18391927] (imputed)	N
853	chr20	35237201	35237202	rs150260898	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q11.23		rs150260898-G	NR	4E-14		1.2822156	NR	Affymetrix [7846216] (imputed)	N
853	chr20	35237201	35237202	rs150260898	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q11.23		rs150260898-G	NR	5E-10		1.2578616	[1.17-1.35]	Affymetrix [7846216] (imputed)	N
853	chr20	35237201	35237202	rs150260898	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs150260898-G	0.0706853	1E-11		0.0897987	[0.063-0.116] unit decrease	Affymetrix [17914406] (imputed)	N
853	chr20	35246299	35246300	rs35056722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs35056722-?	NR	1E-17				NR [~ 8900000] (imputed)	N
853	chr20	35251961	35251962	rs4812383	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	20q11.23	NR	rs4812383-?	NR	3E-8	(Alistipes_shahii)	0.243801	[0.16-0.33] unit decrease	Illumina [5293637] (imputed)	N
854	chr20	35258741	35258742	rs55804368	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs55804368-T	NR	2E-90		0.328	[0.18-0.47] unit increase	Affymetrix [8351141] (imputed)	N
854	chr20	35276397	35276398	rs221308	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q11.23		rs221308-A	NR	2E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
854	chr20	35276584	35276585	rs4812405	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.23	NR	rs4812405-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
854	chr20	35364999	35365000	rs56159798	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs56159798-?	NR	3E-10		1.12704	[1.09-1.16]	NR [685523]	N
854	chr20	35364999	35365000	rs56159798	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	20q11.23		rs56159798-?	NR	9E-7		1.23608	[1.15-1.32]	NR [674885]	N
854	chr20	35364999	35365000	rs56159798	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs56159798-C	0.0792199	1E-10		0.0801231	[0.055-0.105] unit decrease	Affymetrix [17914406] (imputed)	N
854	chr20	35386234	35386235	rs56317999	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	20q11.23	DSN1	rs56317999-A	0.03	7E-7		0.035	[0.021-0.049] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
855	chr20	35389638	35389639	rs80177909	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	20q11.23	DSN1	rs80177909-A	0.98	3E-6		2.17	[1.57-3.00]	Affymetrix, Illumina [up to 7729175] (imputed)	N
855	chr20	35390677	35390678	rs56024251	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q11.23	NR	rs56024251-C	0.0852293	7E-10		0.102394	[0.068-0.137] unit decrease	Affymetrix [21375087] (imputed)	N
855	chr20	35445127	35445128	rs73109224	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs73109224-G	NR	2E-80		0.315	[0.17-0.46] unit increase	Affymetrix [8351141] (imputed)	N
855	chr20	35492544	35492545	rs34501072	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q11.23		rs34501072-?	NR	2E-7		1.09117	[1.06-1.12]	NR [685523]	N
855	chr20	35494085	35494086	rs1291101	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	20q11.23	C20orf117, C20orf118	rs1291101-?	NR	8E-6	(Males only)	0.037	[NR] unit decrease	Illumina [522636]	N
855	chr20	35506790	35506791	rs138156272	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	20q11.23	TLDC2	rs138156272-A	0.019	4E-6		2.68	[1.76-4.08]	Illumina [8672852] (imputed)	N
856	chr20	35529000	35529001	rs1291146	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q11.23	SAMHD1	rs1291146-T	0.1395	4E-7		0.047	[0.029-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
856	chr20	35551616	35551617	rs11696169	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs11696169-C	NR	1E-44		0.186	[0.088-0.284] unit increase	Affymetrix [8351141] (imputed)	N
856	chr20	35564688	35564689	rs6065494	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q11.23	C20orf118	rs6065494-?	NR	4E-6	(TAG 54:1)	0.19655931	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
856	chr20	35577696	35577697	rs6030369	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs6030369-?	NR	3E-37				NR [~ 8900000] (imputed)	N
856	chr20	35578679	35578680	rs4810362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs4810362-?	NR	2E-43				NR [~ 8900000] (imputed)	N
856	chr20	35596526	35596527	rs6130229	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM1	5,368 Icelandic ancestry individuals	NA	20q11.23		rs6130229-A	0.1671	2E-16		0.213315	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
856	chr20	35604036	35604037	rs8120315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q11.23		rs8120315-C	0.204256	7E-11		0.017956095	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr20	35604036	35604037	rs8120315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q11.23		rs8120315-C	0.204261	3E-10		0.017331574	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
856	chr20	35607478	35607479	rs112984321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q11.23		rs112984321-?	NR	3E-8				NR [~ 8900000] (imputed)	N
856	chr20	35611695	35611695	rs555594022	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	20q11.23	intergenic	rs555594022-AT	0.1496	2E-14		0.03837109	[0.029-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
856	chr20	35620978	35620979	rs139484064	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes	3,345 European ancestry cases, 2,372 European ancestry controls	4,579 European ancestry cases, 7,777 European ancestry controls, 7,272 Asian cases, 8,775 Asian controls, 465 Chinese ancestry cases, 154 Chinese ancestry controls, 156 Indian ancestry cases, 66 Indian ancestry controls, 202 Malay ancestry cases, 21 Malay ancestry controls	20q11.23	NR	rs139484064-?		2E-6	(EA)	1.73	[1.53-1.96]	Affymetrix, Illumina [up to 9343778] (imputed)	N
856	chr20	35637397	35637398	rs6030712	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	20q11.23	RBL1	rs6030712-A	0.39	9E-12		0.021	[0.0092-0.0328] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
856	chr20	35643945	35643946	rs6017001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs6017001-A	0.849437	7E-39				Affymetrix, Illumina [22063850] (imputed)	N
857	chr20	35654269	35654270	rs539689071	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q11.23	RBL1	rs539689071-T	4.88999999999962E-4	1E-9		0.39207053	[0.27-0.52] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35663519	35663519	rs548223088	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	20q11.23	RBL1	rs548223088-TAA	NR	4E-13		0.039853	[0.029-0.051] unit decrease	Affymetrix [16832071] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q11.23		rs149999468-A	NR	5E-15		0.2383	[0.18-0.3] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q11.23		rs149999468-A	NR	4E-13		0.2205	[0.16-0.28] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	20q11.23		rs149999468-?	NR	4E-20		0.238689	[0.19-0.29] unit increase	NR [9800000] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	20q11.23		rs149999468-?	NR	4E-22		0.253896	[0.2-0.31] unit increase	NR [9800000] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	20q11.23		rs149999468-?	NR	6E-25		0.261201	[0.21-0.31] unit increase	NR [9800000] (imputed)	N
857	chr20	35675511	35675512	rs149999468	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	20q11.23		rs149999468-?	NR	2E-18		0.227877	[0.18-0.28] unit increase	NR [9800000] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q11.23	RBL1	rs149999468-A	0.00151999999999997	3E-15		0.22563782	[0.17-0.28] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q11.23	RBL1	rs149999468-A	0.001525	8E-14		0.2148697	[0.16-0.27] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.23	RBL1	rs149999468-A	0.00151400000000002	3E-18		0.248503	[0.2-0.3] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q11.23	RBL1	rs149999468-A	0.00150899999999998	2E-15		0.2263006	[0.17-0.28] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs149999468-G	0.998439	4E-22				Affymetrix, Illumina [24246363] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q11.23	NR	rs149999468-G	0.998473	6E-24		0.252547	[0.2-0.3] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs149999468-G	0.99847	5E-19				Affymetrix, Illumina [20825802] (imputed)	N
857	chr20	35675511	35675512	rs149999468	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q11.23	NR	rs149999468-G	0.998478	1E-20		0.235825	[0.19-0.29] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
857	chr20	35696465	35696466	rs774266980	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	20q11.23		rs774266980-?	NR	4E-9		0.466492	[0.3-0.64] unit decrease	NR [9800000] (imputed)	N
857	chr20	35696465	35696466	rs774266980	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	20q11.23		rs774266980-?	NR	2E-9		0.46342	[0.3-0.63] unit increase	NR [9800000] (imputed)	N
857	chr20	35696465	35696466	rs774266980	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean reticulocyte volume	436,944 European ancestry individuals	NA	20q11.23		rs774266980-?	NR	1E-12		0.59097	[0.42-0.76] unit increase	NR [9800000] (imputed)	N
857	chr20	35696465	35696466	rs774266980	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	20q11.23		rs774266980-?	NR	2E-15		0.621749	[0.46-0.79] unit increase	NR [9800000] (imputed)	N
857	chr20	35696465	35696466	rs774266980	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	20q11.23		rs774266980-?	NR	2E-13		0.592653	[0.43-0.76] unit increase	NR [9800000] (imputed)	N
857	chr20	35734862	35734863	rs1744757	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20q11.23	MROH8	rs1744757-T	0.850719	1E-7		0.035881	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
857	chr20	35739137	35739138	rs1780706	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q11.23	MROH8	rs1780706-T	0.844599	3E-32		0.03623904	[0.03-0.042] unit increase	Affymetrix [93095623] (imputed)	N
857	chr20	35739137	35739138	rs1780706	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q11.23	NR	rs1780706-C	0.154558	2E-41		0.035134	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
857	chr20	35739137	35739138	rs1780706	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q11.23		rs1780706-?	NR	2E-42				NR [~ 8900000] (imputed)	N
857	chr20	35766336	35766337	rs8115854	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	20q11.23	C20orf132	rs8115854-?	NR	2E-6				Illumina [516645]	N
857	chr20	35780728	35780729	rs13038765	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.23	NR	rs13038765-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
858	chr20	35793259	35793260	rs73094911	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs73094911-C	NR	3E-56		0.282	[0.14-0.42] unit increase	Affymetrix [8351141] (imputed)	N
858	chr20	35809782	35809783	rs6031882	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	20q11.23	RPN2	rs6031882-?	NR	6E-6				Illumina [516645]	N
858	chr20	35810113	35810114	rs74417947	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	20q11.23	RPN2	rs74417947-?	NR	2E-8	(African)			Illumina [4404269] (imputed)	N
858	chr20	35854008	35854009	rs6094136	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	20q11.23	RPN2	rs6094136-G	0.001693	3E-7		10.08	3.385-30.01	Illumina [164395]	N
858	chr20	35871133	35871134	rs6073782	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q11.23		rs6073782-C	0.590134	2E-18		0.0179936	[0.014-0.022] unit increase	Illumina [13479295] (imputed)	N
858	chr20	35871133	35871134	rs6073782	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q11.23	RPN2, GHRH	rs6073782-?	NR	6E-23		0.028675474	[0.023-0.034] unit increase	Illumina [27896057] (imputed)	N
858	chr20	35872646	35872647	rs1001352	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.23	RPN2	rs1001352-T	0.8165	2E-21		0.0221	[0.018-0.027] unit increase	Affymetrix [18391927] (imputed)	N
858	chr20	35885268	35885272	rs763014119	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	20q11.23		rs763014119-?	NR	3E-12		0.767611	[0.55-0.99] unit decrease	NR [9800000] (imputed)	N
858	chr20	35885268	35885272	rs763014119	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	20q11.23		rs763014119-?	NR	1E-12		0.611246	[0.44-0.79] unit decrease	NR [9800000] (imputed)	N
858	chr20	35890273	35890274	rs117919628	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q11.23	NR	rs117919628-A	0.00304973	2E-11		0.566352	[0.4-0.73] unit decrease	Affymetrix [17914406] (imputed)	N
859	chr20	35922999	35923000	rs372043631	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q11.23	MANBAL	rs372043631-C	0.9967	2E-38		0.2869	[0.24-0.33] unit increase	Affymetrix [18391927] (imputed)	N
859	chr20	35948091	35948092	rs6017776	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs6017776-?	NR	3E-17				NR [~ 8900000] (imputed)	N
859	chr20	35965907	35965908	rs11697428	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	20q11.23	NR	rs11697428-C	NR	3E-38		0.19	[0.086-0.294] unit increase	Affymetrix [8351141] (imputed)	N
859	chr20	36005430	36005431	rs79869535	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		SRC	rs79869535-?	NR	3E-6	(male)	2.18621	[NR] unit decrease	Affymetrix [NR] (imputed)	N
859	chr20	36017339	36017340	rs754626	26908436	Siiskonen SJ	2016-02-12	Cancer Epidemiol Biomarkers Prev	A Genome-Wide Association Study of Cutaneous Squamous Cell Carcinoma among European Descendants.	Squamous cell carcinoma	745 European ancestry cases, 12,805 European ancestry controls	531 European ancestry cases, 551 European ancestry controls	20q11.23	SRC	rs754626-G	0.25	1E-6		1.32	[1.18-1.47]	Affymetrix [2392512] (imputed)	N
859	chr20	36038981	36038982	rs138284316	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs138284316-?	NR	1E-24				NR [~ 8900000] (imputed)	N
860	chr20	36051845	36051846	rs6018432	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	20q11.23	SRC, BLCAP	rs6018432-G	0.888	4E-13				NR [509413]	N
860	chr20	36068388	36068389	rs17194885	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	20q11.23	SRC	rs17194885-A	0.96	4E-6		0.61	[0.36-0.86] unit decrease	Illumina [2675979] (imputed)	N
860	chr20	36097923	36097924	rs6018728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q11.23		rs6018728-?	NR	8E-10				NR [~ 8900000] (imputed)	N
861	chr20	36242057	36242058	rs6063386	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	20q11.23		rs6063386-C	0.33	5E-10		0.03	L increase	Affymetrix [NR] (imputed)	N
861	chr20	36263774	36263775	rs73107564	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	20q11.23	Intergenic	rs73107564-A	0.89	2E-7		1.43	[1.25-1.63]	Affymetrix, Illumina [3378933] (imputed)	N
861	chr20	36281398	36281399	rs186905936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs186905936-?	NR	5E-22				NR [~ 8900000] (imputed)	N
862	chr20	36382854	36382855	rs6063547	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	20q11.23	CTNNBL1	rs6063547-G	0.03	6E-8		1.03	[1.02-1.04]	Affymetrix [7745390] (imputed)	N
862	chr20	36412381	36412382	rs117832325	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting glucose	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	20q11.23	CTNNBL1	rs117832325-A	0.01	4E-7	(EA)	1.16	[0.71-1.61] unit increase	Illumina [up to 13042663] (imputed)	N
862	chr20	36433287	36433288	rs2281148	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20q11.23	CTNNBL1	rs2281148-T	0.749285	2E-9		0.00979394	[0.0066-0.013] unit decrease	Affymetrix [12370749]	N
863	chr20	36457550	36457551	rs138353527	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	20q11.23	CTNNBL1	rs138353527-G	NR	5E-6		8.810462	[4.83-12.79] unit increase	Illumina [> 6200000] (imputed)	N
863	chr20	36469693	36469694	rs4811196	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	20q11.23	CTNNBL1	rs4811196-?	NR	1E-6	(TRBMDf)			Affymetrix [70897]	N
863	chr20	36561881	36561882	rs1998049	32355309	Cha PC	2020-05-01	J Hum Genet	Genome-wide association study identifies zonisamide responsive gene in Parkinson's disease patients.	Levodopa wearing off effect (time symptoms uncontrolled) in Parkinson's disease (response to zonisamide)	67 Japanese ancestry responders, 133 Japanese ancestry poor responders	NA	20q11.23	VSTM2L	rs1998049-T	0.04	6E-6		5.834	[NR]	Illumina [611492]	N
863	chr20	36562528	36562529	rs117435593	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q11.23	NR	rs117435593-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
863	chr20	36562528	36562529	rs117435593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q11.23		rs117435593-?	NR	2E-8				NR [~ 8900000] (imputed)	N
864	chr20	36662830	36662831	rs755107	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	20q11.23	NR	rs755107-G	NR	9E-6	(Hispanic)	5.5	[7.88-3.11] unit decrease	Affymetrix [14000000] (imputed)	N
865	chr20	36785126	36785127	rs2284878	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	20q11.23	NR	rs2284878-?	NR	4E-9	(LBP)	0.36	[0.24-0.48] unit decrease	Illumina [4020654] (imputed)	N
865	chr20	36787428	36787429	rs4811528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q11.23		rs4811528-A	NR	3E-9		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
865	chr20	36787428	36787429	rs4811528	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs4811528-A	0.732254	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
865	chr20	36793528	36793529	rs2076380	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	20q11.23	NR	rs2076380-?	NR	8E-6		0.9316	[0.56-1.31] unit decrease	Affymetrix [7154205] (imputed)	N
865	chr20	36824719	36824720	rs75727053	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	20q11.23	NR	rs75727053-?	NR	1E-8				Affymetrix [5486770] (imputed)	N
865	chr20	36827675	36827676	rs6023897	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q11.23	NR	rs6023897-G	0.238442	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
865	chr20	36830132	36830133	rs6069151	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	20q11.23		rs6069151-A	0.481	3E-8		0.029	[0.019-0.039] bpm decrease	Affymetrix [9800000] (imputed)	N
866	chr20	36832525	36832526	rs6023939	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	20q11.23	KIAA1755	rs6023939-C	0.54	7E-12		0.44	[0.32-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
866	chr20	36840155	36840156	rs6123471	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	20q11.23	KIAA1755	rs6123471-T	0.529318	3E-28		0.70727	[0.58-0.83] unit increase	Affymetrix [~ 7800000] (imputed)	N
866	chr20	36840155	36840156	rs6123471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (SDNN)	27,850 European ancestry individuals	24,125 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,899 African American individuals	20q11.23	KIAA1755	rs6123471-T	0.534091	3E-6	(EA)	0.014244	[0.0083-0.0202] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
866	chr20	36840155	36840156	rs6123471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	20q11.23	KIAA1755	rs6123471-T	0.533935	5E-6		0.023783	[0.016-0.032] unit decrease (EA)	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
866	chr20	36840155	36840156	rs6123471	28613276	Nolte IM	2017-06-14	Nat Commun	Genetic loci associated with heart rate variability and their effects on cardiac disease risk.	Heart rate variability traits (RMSSD)	26,523 European ancestry individuals	20,429 European ancestry individuals, 11,234 Hispanic/Latino individuals, 6,895 African American individuals	20q11.23	KIAA1755	rs6123471-T	0.533935	1E-8	(EA)	0.023783	[0.016-0.032] unit decrease	Affymetrix, Illumina, Perlegen [at least 2135543] (imputed)	N
866	chr20	36840155	36840156	rs6123471	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	20q11.23	KIAA1755	rs6123471-C	0.46	7E-72		0.5953	[0.53-0.66] unit decrease	Affymetrix [19941912] (imputed)	N
866	chr20	36841913	36841914	rs3746471	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	20q11.23		rs3746471-?	NR	6E-19				NR [9705931] (imputed)	N
866	chr20	36841913	36841914	rs3746471	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q11.23		rs3746471-A	0.4632	2E-10		0.08897949	[0.058-0.12] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
866	chr20	36841913	36841914	rs3746471	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q11.23		rs3746471-A	0.4631	2E-9		0.08279476	[0.056-0.11] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
866	chr20	36841913	36841914	rs3746471	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	20q11.23	KIAA1755	rs3746471-G	0.5351	4E-12		0.4636	[0.33-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
866	chr20	36842357	36842357	rs113518312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q11.23		rs113518312-CT	NR	2E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
866	chr20	36842882	36842883	rs6127466	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q11.23		rs6127466-G	0.42	3E-22		9.71	z score increase	Affymetrix [9061022] (imputed)	N
866	chr20	36843991	36843992	rs6069234	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q11.23		rs6069234-G	0.43	9E-69		17.52	z score increase	Affymetrix [9061022] (imputed)	N
866	chr20	36843991	36843992	rs6069234	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q11.23		rs6069234-G	0.43	4E-38		12.91	z score increase	Affymetrix [9061022] (imputed)	N
866	chr20	36843991	36843992	rs6069234	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q11.23	NR	rs6069234-G	0.4715	1E-17				NR [9056863] (imputed)	N
866	chr20	36843991	36843992	rs6069234	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	RR interval (heart rate)	2,006 Erasmus Rucphen Family (founder/genetic isolate) individuals, 26,692 European ancestry individuals	NA	20q11.23	KIAA1755	rs6069234-G	0.481	9E-9		6.553	[4.32-8.78] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
866	chr20	36844037	36844038	rs6127471	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	20q11.23	KIAA1755	rs6127471-C	0.54	5E-29		0.429	[0.34-0.52] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
866	chr20	36844115	36844116	rs5026717	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q11.23	NR	rs5026717-T	0.4711	1E-17				NR [9056863] (imputed)	N
866	chr20	36849006	36849007	rs4811601	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q11.23		rs4811601-T	NR	2E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	8E-10	(360 ms)	0.0349559	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	7E-11	(286 ms)	0.0370723	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	6E-9	(362 ms)	0.0331119	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	6E-15	(298 ms)	0.0435247	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	5E-19	(310 ms)	0.0492133	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	4E-17	(328 ms)	0.0464422	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	3E-8	(368 ms)	0.0316243	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	3E-12	(352 ms)	0.0396193	[0.028-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	2E-17	(326 ms)	0.0468029	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	2E-15	(296 ms)	0.0438522	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	2E-12	(350 ms)	0.0402365	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	2E-10	(358 ms)	0.0364227	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-9	(284 ms)	0.0343439	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-19	(316 ms)	0.050183	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-19	(314 ms)	0.0495155	[0.038-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-17	(322 ms)	0.0468213	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-16	(176 ms)	0.0436244	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q11.23	KIAA1755	rs4811601-C	0.54447	1E-11	(160 ms)	0.0356057	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
866	chr20	36849006	36849007	rs4811601	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20q11.23	KIAA1755	rs4811601-T	0.4603	3E-11		0.1164	[0.082-0.151] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
866	chr20	36849087	36849088	rs4811602	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	20q11.23		rs4811602-G	0.53	4E-9		0.028	[0.018-0.038] unit decrease	Affymetrix [8918919] (imputed)	N
866	chr20	36849087	36849088	rs4811602	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	20q11.23	NR	rs4811602-?		4E-8				NR [7428630] (imputed)	N
866	chr20	36849087	36849088	rs4811602	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	20q11.23	ADAMTS19, KIAA1024L	rs4811602-?		9E-14				NR [7428630] (imputed)	N
866	chr20	36849087	36849088	rs4811602	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q11.23	KIAA1755	rs4811602-?		1E-14				NR [7428630] (imputed)	N
866	chr20	36849087	36849088	rs4811602	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	20q11.23	KIAA1755	rs4811602-?	NR	3E-31		1.1286682	[1.11-1.15]	Illumina [13729857] (imputed)	N
866	chr20	36855248	36855249	rs2179429	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		KIAA1755	rs2179429-?	NR	2E-12	(male)	2.26305	[NR] unit decrease	Affymetrix [NR] (imputed)	N
866	chr20	36877745	36877746	rs1205445	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q11.23	KIAA1755	rs1205445-A	0.3373	5E-8		0.1145	[0.073-0.156] mmHg increase	Affymetrix [NR] (imputed)	N
866	chr20	36886396	36886397	rs1205424	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		20q11.23	NR	rs1205424-G	0.679953	5E-6		1.0664995	[1.1-1.07]	Affymetrix [16499239] (imputed)	N
866	chr20	36894348	36894349	rs13040437	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q11.23	BPI	rs13040437-G	0.145003	2E-9		0.019054212	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
866	chr20	36894348	36894349	rs13040437	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q11.23	NR	rs13040437-G	0.144284	1E-11		0.017878	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
866	chr20	36895859	36895860	rs1934915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q11.23		rs1934915-?	NR	5E-9				NR [~ 8900000] (imputed)	N
866	chr20	36896817	36896818	rs141939445	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin levels	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	1,018 European ancestry individuals, 2,876 individuals	20q11.23	KIAA1755	rs141939445-T	0.99	2E-7	(Subset)	0.91	[0.56-1.26] unit increase	Illumina [up to 38043574] (imputed)	N
866	chr20	36918564	36918565	rs2346066	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	NR	rs2346066-G	0.632	7E-21	(Mitochondrial ubiquitin ligase activator of NFKB 1, MUL1.9315.16.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
866	chr20	36920390	36920391	rs6064334	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUL1	5,367 Icelandic ancestry individuals	NA	20q11.23		rs6064334-T	0.4051	9E-68		0.334028	[0.3-0.37] unit increase	Illumina [7506463] (imputed)	N
866	chr20	36921366	36921367	rs6069590	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPI	5,368 Icelandic ancestry individuals	NA	20q11.23		rs6069590-C	0.3985	2E-146		0.480927	[0.44-0.52] unit increase	Illumina [7506463] (imputed)	N
866	chr20	36921509	36921510	rs4287822	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	NR	rs4287822-G	0.362	2E-51	(Bactericidal permeability-increasing protein, BPI.4126.22.1)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
866	chr20	36929987	36929988	rs879751242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.23	BPI, CTD-2308N23.2	rs879751242-G	0.357514	1E-10		0.015370802	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
866	chr20	36932294	36932295	rs3746472	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	20q11.23	NR	rs3746472-?	NR	3E-14	(Bactericidal permeability-increasing protein)			Illumina [514227]	N
866	chr20	36932797	36932798	rs5741798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPI	5,368 Icelandic ancestry individuals	NA	20q11.23		rs5741798-G	0.1498	4E-13		0.193717	[0.14-0.25] unit decrease	Illumina [7506463] (imputed)	N
866	chr20	36933266	36933267	rs548404876	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q11.23	NR	rs548404876-?	NR	9E-6		0.0074071	[0.0041-0.0107] unit increase	Affymetrix [805426] (imputed)	N
866	chr20	36939586	36939587	rs4811689	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPI	5,368 Icelandic ancestry individuals	NA	20q11.23		rs4811689-A	0.46	4E-143		0.460353	[0.42-0.5] unit increase	Illumina [7506463] (imputed)	N
866	chr20	36943694	36943695	rs75444346	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUL1	5,367 Icelandic ancestry individuals	NA	20q11.23		rs75444346-A	0.05366	5E-46		0.597953	[0.52-0.68] unit decrease	Illumina [7506463] (imputed)	N
866	chr20	36947274	36947275	rs6123584	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q11.23	BPI, CTD-2308N23.2	rs6123584-A	0.102728	1E-10		0.023437254	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr20	36948933	36948934	rs5743511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q11.23	BPI, CTD-2308N23.2	rs5743511-C	0.099154	7E-15		0.028940266	[0.022-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
866	chr20	36948933	36948934	rs5743511	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	NR	rs5743511-C	0.096	7E-64	(Bactericidal permeability-increasing protein, BPI.4126.22.1)	0.69	[0.61-0.77] unit decrease	Affymetrix [10572788] (imputed)	N
866	chr20	36952341	36952342	rs5741804	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	20q11.23	BPI	rs5741804-?	NR	9E-6	(adjusted for dose, GFR & AST)	1.49	unit decrease (EA)	Illumina [610255]	N
866	chr20	36953494	36953495	rs5743521	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q11.23	NR	rs5743521-T	0.01045	1E-8	(ISOC2)	0.3066	NR unit increase	Illumina [1671387] (imputed)	N
866	chr20	36957836	36957837	rs6024905	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20q11.23	NR	rs6024905-?	NR	1E-6		1.2399	[NR]	Affymetrix [722112]	N
866	chr20	36961083	36961084	rs2425358	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNF	5,362 Icelandic ancestry individuals	NA	20q11.23		rs2425358-G	0.09653	8E-15		0.242046	[0.18-0.3] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36967369	36967370	rs2154187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q11.23	BPI	rs2154187-A	0.528289	2E-10		0.014166179	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr20	36969971	36969972	rs11086556	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	LBP	rs11086556-G	0.083	4E-26	(Mitochondrial ubiquitin ligase activator of NFKB 1, MUL1.9315.16.3)	0.48	[0.4-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr20	36970166	36970167	rs6024991	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUL1	5,367 Icelandic ancestry individuals	NA	20q11.23		rs6024991-G	0.4901	1E-55		0.295095	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36974156	36974157	rs1780617	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MUL1	5,367 Icelandic ancestry individuals	NA	20q11.23		rs1780617-G	0.1426	9E-98		0.556114	[0.5-0.61] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36974156	36974157	rs1780617	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPI	5,368 Icelandic ancestry individuals	NA	20q11.23		rs1780617-G	0.1426	4E-180		0.734608	[0.68-0.78] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36974156	36974157	rs1780617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	20q11.23	LBP	rs1780617-G	0.121114	2E-9		0.020611342	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
867	chr20	36974156	36974157	rs1780617	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs1780617-A	0.853125	9E-113	(BPI, 4126_22_1)	0.7666605	[0.7-0.83] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	36974156	36974157	rs1780617	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs1780617-A	0.853125	1E-69	(MUL1, 9315_16_3)	0.615272	[0.55-0.68] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	36974156	36974157	rs1780617	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs1780617-A	0.853125	1E-10	(CLPSL1, 9526_3_3)	0.22444052	[0.16-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
867	chr20	36974156	36974157	rs1780617	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	BPI	rs1780617-G	0.122	1E-67	(Bactericidal permeability-increasing protein, BPI.4126.22.1)	0.64	[0.56-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr20	36977635	36977636	rs11536940	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	20q11.23	LBP	rs11536940-A	0.06	2E-6	(Age 20-60 years)	0.384	[0.23-0.54] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
867	chr20	36977969	36977970	rs1739654	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q11.23	NR	rs1739654-G	0.958833931431119	5E-6	(IGP33)	0.4461	[0.26-0.64] unit increase	Illumina [~ 2500000] (imputed)	N
867	chr20	36978509	36978510	rs1609800	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRRG4	5,364 Icelandic ancestry individuals	NA	20q11.23		rs1609800-T	0.3998	4E-12		0.134624	[0.097-0.173] unit increase	Illumina [7506463] (imputed)	N
867	chr20	36978509	36978510	rs1609800	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BPI	5,368 Icelandic ancestry individuals	NA	20q11.23		rs1609800-T	0.3998	1E-83		0.366214	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
867	chr20	36985884	36985885	rs11536949	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRDM1	5,354 Icelandic ancestry individuals	NA	20q11.23		rs11536949-T	0.1035	4E-23		0.292031	[0.23-0.35] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36985884	36985885	rs11536949	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPYSL2	5,367 Icelandic ancestry individuals	NA	20q11.23		rs11536949-T	0.1035	3E-17		0.261519	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36994820	36994821	rs113020874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q11.23		rs113020874-?	NR	2E-11				NR [~ 8900000] (imputed)	N
867	chr20	36997348	36997349	rs6099309	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,363 Icelandic ancestry individuals	NA	20q11.23		rs6099309-T	0.08708	1E-6		0.162909	[0.097-0.228] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TP53	5,348 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	1E-14		0.221158	[0.16-0.28] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MB	5,365 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	5E-22		0.264177	[0.21-0.32] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LYPD3	5,365 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	2E-264		0.99031	[0.93-1.05] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LBP	5,340 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	9E-303		0.938705	[0.89-0.99] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIF3A	5,342 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	6E-40		0.369907	[0.32-0.42] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL15	5,365 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	8E-163		0.798437	[0.74-0.86] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPC	5,363 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	3E-43		0.414474	[0.36-0.47] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENO2	5,340 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	5E-22		0.264849	[0.21-0.32] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EIF5A2	5,355 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	8E-19		0.263939	[0.21-0.32] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ANKRD46	5,364 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	1E-12		0.217217	[0.16-0.28] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,363 Icelandic ancestry individuals	NA	20q11.23		rs2232613-T	0.1021	1E-306		1.04571	[0.99-1.1] unit decrease	Illumina [7506463] (imputed)	N
867	chr20	36997654	36997655	rs2232613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	LBP	rs2232613-T	0.077	4E-33	(PR domain zinc finger protein 1, PRDM1.14197.2.3)	0.54	[0.44-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr20	36997654	36997655	rs2232613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	LBP	rs2232613-T	0.077	1E-30	(Heterogeneous nuclear ribonucleoproteins C1/C2, HNRNPC.11429.80.3)	0.52	[0.42-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr20	36997654	36997655	rs2232613	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q11.23	LBP	rs2232613-T	0.077	1E-104	(Cytochrome c oxidase subunit 8A, mitochondrial, COX8A.10497.242.3)	0.94	[0.86-1.02] unit decrease	Affymetrix [10572788] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	7E-10	(DPYSL2, 13567_1_3)	0.29316136	[0.2-0.39] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	6E-64	(IL15, 10795_32_3)	0.7665391	[0.68-0.85] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	6E-11	(EIF5A2, 11355_10_3)	0.30629995	[0.21-0.4] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	5E-26	(HNRNPC, 11429_80_3)	0.49722332	[0.41-0.59] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	4E-9	(ENO2, 11083_23_3)	0.27512273	[0.18-0.37] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	3E-24	(KIF3A, 13961_18_3)	0.47514996	[0.38-0.57] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	2E-95	(LYPD3, 9307_3_3)	0.94455063	[0.86-1.03] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	2E-122	(COX8A, 10497_242_3)	1.064655	[0.98-1.15] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	2E-112	(LBP, 3074_6_2)	1.0087143	[0.92-1.09] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	2E-105	(AKT2, 5360_9_2)	0.96008366	[0.88-1.04] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37006728	37006729	rs73112473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q11.23	NR	rs73112473-C	0.9221875	1E-186	(CLPSL1, 9526_3_3)	1.2622766	[1.18-1.34] unit increase	Illumina [> 1000000] (imputed)	N
867	chr20	37020977	37020978	rs736368	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	20q11.23	ATF6	rs736368-A	0.153	9E-6		0.725	[0.629 - 0.836]	Illumina [5398302] (imputed)	N
867	chr20	37038112	37038113	rs6099524	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	20q11.23	NR	rs6099524-T	0.002	1E-9		0.29	[0.2-0.38] unit increase	Affymetrix [at least 12428592] (imputed)	N
867	chr20	37050011	37050012	rs41308713	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		20q11.23	SNHG17	rs41308713-?	NR	2E-7	(AA)	0.114	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
868	chr20	37209558	37209559	rs8116100	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q11.23	NR	rs8116100-?	NR	2E-6				Affymetrix [NR]	N
869	chr20	37246984	37246985	rs220544	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	20q11.23		rs220544-C	0.977662056	1E-6		0.09287674	[0.055-0.131] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
869	chr20	37250753	37250754	rs6026868	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	20q11.23	ARHGAP40	rs6026868-T	0.833	9E-6		0.464	[0.26-0.67] unit decrease	Illumina [6007542] (imputed)	N
869	chr20	37279254	37279255	rs220519	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q11.23	NR	rs220519-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
869	chr20	37284069	37284070	rs6027072	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	20q11.23	ARHGAP40	rs6027072-A	0.03	4E-9		0.0184	[0.0095-0.0273] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
869	chr20	37294738	37294739	rs35255016	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q11.23		rs35255016-?	NR	6E-13				NR [~ 8900000] (imputed)	N
869	chr20	37333011	37333012	rs6071166	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	20q11.23	SLC32A1	rs6071166-C	0.37	8E-6	(women)	0.025	[0.013-0.037] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
869	chr20	37333011	37333012	rs6071166	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	20q11.23	SLC32A1	rs6071166-C	0.37	2E-7		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
869	chr20	37333011	37333012	rs6071166	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	20q11.23	SLC32A1	rs6071166-C	0.37	7E-7		0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
869	chr20	37346750	37346751	rs1075195	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	20q11.23	NR	rs1075195-?	NR	4E-9		1.06567	[1.04-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
869	chr20	37346750	37346751	rs1075195	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	20q11.23	intergenic	rs1075195-T	NR	9E-7		1.062	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
870	chr20	37366736	37366737	rs6128857	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	20q11.23	NR	rs6128857-?	NR	2E-9		1.06588	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
870	chr20	37375384	37375385	rs2757517	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	20q11.23		rs2757517-C	0.64	2E-6		0.09	[0.051-0.129] unit increase	Illumina [5305352] (imputed)	N
870	chr20	37375391	37375392	rs2748660	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	20q11.23		rs2748660-?	NR	4E-8		0.0181	NR unit decrease	NR [4425810] (imputed)	N
870	chr20	37387861	37387862	rs6128907	28918882	Wattacheril J	2017-09-14	J Pediatr	Genome-Wide Associations Related to Hepatic Histology in Nonalcoholic Fatty Liver Disease in Hispanic Boys.	Liver fibrosis in pediatric non-alcoholic fatty acid liver disease	208 Hispanic boys	NA	20q11.23	ACTR5	rs6128907-C	0.2067	1E-6	(additive model)			Illumina [up to 624297]	N
870	chr20	37389527	37389528	rs75021006	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	20q11.23	NR	rs75021006-?	NR	5E-6		0.6615	[0.48-0.84]	Illumina [NR] (imputed)	N
870	chr20	37389853	37389854	rs13040787	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ACTR5	rs13040787-?	NR	1E-10	(female)	3.52136	[NR] unit decrease	Affymetrix [NR] (imputed)	N
870	chr20	37405745	37405746	rs2748666	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	20q11.23	NR	rs2748666-C	0.428596962188079	2E-8		0.006584899	[0.0043-0.0089] unit decrease	NR [NR]	N
870	chr20	37425957	37425958	rs2103655	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs major depressive disorder (ordinary least squares (OLS))	33,640 schizophrenia cases, 59,851 MDD cases	7,035 schizophrenia cases, 111,175 MDD cases	20q11.23		rs2103655-?	NR	3E-6		0.025	NR unit increase	NR [4483387] (imputed)	N
870	chr20	37425957	37425958	rs2103655	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	20q11.23	NR	rs2103655-?		5E-12				NR [8377093]	N
870	chr20	37425957	37425958	rs2103655	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	20q11.23	PPP1R16B, ACTR5	rs2103655-?		1E-9				NR [6786993] (imputed)	N
870	chr20	37425957	37425958	rs2103655	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	20q11.23	PPP1R16B	rs2103655-A	NR	6E-11		1.068	[1.05-1.09]	Illumina [6627481] (imputed)	N
870	chr20	37425957	37425958	rs2103655	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	20q11.23	PPP1R16B	rs2103655-A	NR	1E-10	(EA)	1.0796	[1.06-1.1]	Illumina [6627481] (imputed)	N
870	chr20	37426579	37426580	rs6071524	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	20q11.23		rs6071524-?	NR	3E-11		0.0229	NR unit increase	NR [4428082] (imputed)	N
870	chr20	37426579	37426580	rs6071524	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	20q11.23	ACTR5, PPP1R16B	rs6071524-?		1E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
870	chr20	37444815	37444816	rs76642326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q11.23	PPP1R16B	rs76642326-T	0.06374	2E-16		0.03730144	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
870	chr20	37453193	37453194	rs6065094	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs6065094-?	NR	1E-9				NR [2625067]	N
870	chr20	37453193	37453194	rs6065094	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA			rs6065094-?	NR	7E-11		0.0196	NR unit increase	NR [4484088] (imputed)	N
870	chr20	37453193	37453194	rs6065094	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs6065094-A	0.3529	4E-10		0.072498515	[0.05-0.095] unit decrease	NR [NR]	N
870	chr20	37453193	37453194	rs6065094	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		PPP1R16B	rs6065094-?	NR	9E-11		0.013549915	[0.0095-0.0176] unit increase	NR [7306098]	N
870	chr20	37453193	37453194	rs6065094	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs6065094-?	NR	5E-12				Illumina [up to 5582932] (imputed)	N
870	chr20	37453193	37453194	rs6065094	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		ACTR5, PPP1R16B, SLC32A1	rs6065094-?	NR	8E-17		1.0893246	[1.07-1.11]	Illumina [8000000] (imputed)	N
870	chr20	37453193	37453194	rs6065094	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs6065094-G	NR	3E-11		1.0752687	[NR]	Illumina [7158791] (imputed)	N
870	chr20	37453193	37453194	rs6065094	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		ACTR5, PPP1R16B, SLC32A1	rs6065094-G	0.678	1E-11		1.0775862	[1.05-1.1]	Affymetrix, Illumina [9005918] (imputed)	N
870	chr20	37480513	37480514	rs55776947	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPP1R16B	rs55776947-?	NR	9E-10	(female)	3.86925	[NR] unit decrease	Affymetrix [NR] (imputed)	N
870	chr20	37483429	37483430	rs4812322	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	20q11.23	NR	rs4812322-?		7E-11				NR [8377093]	N
871	chr20	37493575	37493576	rs208814	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	20q11.23	PPP1R16B	rs208814-G	0.644506403787419	1E-6		0.0027462	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
871	chr20	37512697	37512698	rs208795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20q11.23		rs208795-?	NR	5E-8				NR [~ 8900000] (imputed)	N
871	chr20	37534936	37534937	rs567151067	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	20q11.23		rs567151067-T	0.0014	3E-8		2.6705	[1.73-3.62] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
871	chr20	37544150	37544151	rs552522200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q11.23	PPP1R16B	rs552522200-T	9.1999999999981E-5	6E-9		0.693432	[0.48-0.91] unit increase	Affymetrix [93095623] (imputed)	N
871	chr20	37547373	37547374	rs4812336	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q11.23	NR	rs4812336-A	0.30267	6E-12		0.00825083	[0.0058-0.0107] unit increase	Affymetrix [16582621] (imputed)	N
871	chr20	37547373	37547374	rs4812336	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q11.23	NR	rs4812336-A	0.30267	9E-9		0.00772261	[0.0051-0.0104] unit increase	Affymetrix [16582614] (imputed)	N
871	chr20	37550934	37550935	rs10392	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence or chronic alcoholic pancreatitis or alcohol-related liver cirrhosis	1,331 German ancestry alcohol dependence cases, 1,110 German ancestry cases with chronic alcoholic pancreatitis, 400 European ancestry cases with alcohol-related liver cirrhosis, 3,684 German ancestry controls	NA	20q11.23	PPP1R16B, FAM83D	rs10392-A	0.1801	8E-7		1.252		Illumina [194024]	N
871	chr20	37567358	37567359	rs186508932	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	20q11.23	NR	rs186508932-?	NR	3E-6		0.6292	[0.36-0.89] unit increase	Illumina [at least 560000] (imputed)	N
871	chr20	37599609	37599610	rs79166949	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	20q11.23	DHX35	rs79166949-T	NR	9E-6	(women)	0.0784384	[0.044-0.113] unit increase	Illumina [13520550] (imputed)	N
872	chr20	37649298	37649299	rs139052240	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q12	NR	rs139052240-CTTTTTTTTT	0.29998899999999995	7E-17		0.0070454	[0.0052-0.0089] unit increase	Affymetrix [16582909] (imputed)	N
872	chr20	37649298	37649299	rs139052240	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q12	NR	rs139052240-CTTTTTTTTT	0.29998899999999995	2E-9		0.00581444	[0.0038-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
872	chr20	37660671	37660672	rs13040864	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DHX35	rs13040864-?	NR	8E-10	(female)	2.23422	[NR] unit decrease	Affymetrix [NR] (imputed)	N
872	chr20	37677660	37677661	rs6071641	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	20q12	DHX35	rs6071641-?	0.42	6E-6		1.3157895	[1.18-1.59]	Illumina [6220060] (imputed)	N
872	chr20	37679848	37679849	rs742276	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	20q12	DHX35	rs742276-?	0.44	9E-6		1.2987013	[1.15-1.52]	Illumina [6220060] (imputed)	N
872	chr20	37690463	37690464	rs926392	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	20q12	DHX35, LOC339568	rs926392-?	0.29	5E-7		2.37	[1.69-3.33]	Affymetrix [832357]	N
872	chr20	37695600	37695601	rs35166252	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	20q12	Intergenic	rs35166252-?	NR	5E-6		1.369	[NR]	Affymetrix [492217] (imputed)	N
872	chr20	37711113	37711114	rs17831536	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q12	NR	rs17831536-?	NR	3E-34				Affymetrix [NR]	N
872	chr20	37728763	37728764	rs76308099	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs76308099-G	0.0122	2E-8	(CSTA)	0.02943	NR unit increase	Illumina [1671387] (imputed)	N
872	chr20	37742806	37742807	rs149870452	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	20q12	Intergenic	rs149870452-T	NR	6E-6	(women)	0.0754095	[0.043-0.108] unit increase	Illumina [13520550] (imputed)	N
872	chr20	37746453	37746454	rs209901	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20q12	DHX35	rs209901-G	NR	6E-6		1.0416667	[1.02-1.06]	Affymetrix [7600000] (imputed)	N
872	chr20	37746453	37746454	rs209901	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	20q12	DHX35	rs209901-G	0.691269	3E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
873	chr20	37763742	37763743	rs2003705	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age, sex, smoking status  and plaque)	3,906 Finnish ancestry individuals	NA	20q12		rs2003705-T	0.2	2E-6				Illumina [NR] (imputed)	N
873	chr20	37793013	37793014	rs143677104	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q12	Intergenic	rs143677104-A	1.0	5E-6	(AA)	0.562	unit increase	Illumina [NR] (imputed)	N
873	chr20	37845476	37845477	rs6028335	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	20q12	LOC339568	rs6028335-?	NR	5E-6				Illumina [805814]	N
873	chr20	37852839	37852840	rs77493580	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	20q12	LOC339568	rs77493580-T	NR	5E-6	(women)	0.0735642	[0.042-0.105] unit increase	Illumina [13520550] (imputed)	N
873	chr20	37873609	37873610	rs932425	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	20q12	intergenic	rs932425-?	NR	5E-6	(SF4)			Affymetrix [5476100] (imputed)	N
873	chr20	37876771	37876772	rs932428	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	20q12	DHX35, FAM83D, LOC339568, PPP1R16B	rs932428-?	NR	2E-6				Illumina [9650000] (imputed)	N
874	chr20	37882316	37882317	rs6129229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs6129229-?	NR	3E-9				NR [~ 8900000] (imputed)	N
874	chr20	37883103	37883103	rs11484119	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q12	intergenic	rs11484119-G	0.9253	1E-12		0.026	[0.019-0.033] unit increase	Affymetrix [18391927] (imputed)	N
874	chr20	37912666	37912667	rs3918508	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	20q12	LINC01734, LINC01370	rs3918508-?	NR	3E-6		0.06	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
874	chr20	37992740	37992741	rs2206437	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Nose morphology	5,643 Korean ancestry individuals	up to 1,940 Korean ancestry individuals	20q12	DHX35	rs2206437-A	0.26	2E-9	(Subnasal width)	0.283	[0.19-0.38] unit decrease	Affymetrix [311944]	N
874	chr20	38008057	38008058	rs11086748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q12		rs11086748-?	NR	1E-7				NR [~ 8900000] (imputed)	N
875	chr20	38073574	38073575	rs4812393	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	20q12	NR	rs4812393-?	NR	9E-10	(Quadrant III (Mandible), Segment 26)	0.020158451	NR unit increase	NR [7417619] (imputed)	N
875	chr20	38073574	38073575	rs4812393	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	20q12	NR	rs4812393-?	NR	2E-9	(Quadrant III (Mandible), Segment 13)	0.017233554	NR unit increase	NR [7417619] (imputed)	N
875	chr20	38074217	38074218	rs6101546	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	20q12	LOC339568, LINC01370	rs6101546-T	NR	8E-6		0.0317	unit increase	Illumina [15409056] (imputed)	N
875	chr20	38082251	38082252	rs877313	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	20q12		rs877313-C	0.461671719	1E-29				Illumina [7417619] (imputed)	N
875	chr20	38082251	38082252	rs877313	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q12		rs877313-?	NR	6E-10				NR [~ 8900000] (imputed)	N
875	chr20	38101544	38101545	rs6028446	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	20q12	DHX35	rs6028446-?	NR	2E-22		1.1481056	[1.12-1.18]	Illumina [13537761] (imputed)	N
875	chr20	38105054	38105055	rs6101567	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	20q12	DHX35	rs6101567-?	NR	7E-8		0.023	[0.014-0.031] unit increase	Illumina [12039491] (imputed)	N
875	chr20	38129001	38129002	rs6028466	21460395	Gu J	2011-04-02	Cancer Prev Res (Phila)	A genome-wide association study identifies a locus on chromosome 14q21 as a predictor of leukocyte telomere length and as a marker of susceptibility for bladder cancer.	Telomere length	459 individuals	1,160 individuals	20q12	DHX35	rs6028466-?	NR	3E-7		0.19	[NR] unit increase	Illumina [312531]	N
876	chr20	38152840	38152841	rs1884371	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nasion depth 2)	6,169 Latin American individuals	NA	20q12		rs1884371-?	NR	2E-7				Illumina [8703729] (imputed)	N
876	chr20	38152840	38152841	rs1884371	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 3)	6,169 Latin American individuals	NA	20q12		rs1884371-?	NR	9E-10				Illumina [8703729] (imputed)	N
876	chr20	38152840	38152841	rs1884371	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (brow ridge protrusion 1)	6,169 Latin American individuals	NA	20q12		rs1884371-?	NR	2E-6				Illumina [8703729] (imputed)	N
876	chr20	38182996	38182997	rs116529436	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs116529436-T	0.01045	2E-8	(CES2)	0.4028	NR unit increase	Illumina [1671387] (imputed)	N
876	chr20	38201674	38201675	rs13044261	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	20q12	LOC339568	rs13044261-G	0.199	4E-6		0.41	[0.28-0.60]	Affymetrix [7435577] (imputed)	N
877	chr20	38294095	38294096	rs789426	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q12	LINC01370	rs789426-G	0.274813	2E-8		0.06786273	[0.044-0.091] unit increase	Affymetrix [7260263] (imputed)	N
877	chr20	38297254	38297255	rs1123102	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q12		rs1123102-?	NR	5E-8		1.06773	[1.04-1.09]	NR [685523]	N
877	chr20	38300806	38300807	rs6016142	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	20q12	LINC01370, LOC339568	rs6016142-T	0.132	1E-13		1.277	[1.197-1.363]	Illumina [238825]	N
877	chr20	38300806	38300807	rs6016142	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	20q12	intergenic	rs6016142-T	0.11	6E-8		0.179	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
877	chr20	38318312	38318313	rs75753276	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs75753276-G	0.01568	8E-9	(PRPS2)	0.1235	NR unit increase	Illumina [1671387] (imputed)	N
877	chr20	38338163	38338164	rs117247004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLPSL1	5,351 Icelandic ancestry individuals	NA	20q12		rs117247004-A	0.01733	8E-11		0.46582	[0.33-0.61] unit decrease	Illumina [7506463] (imputed)	N
877	chr20	38338163	38338164	rs117247004	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AKT2	5,363 Icelandic ancestry individuals	NA	20q12		rs117247004-A	0.01733	7E-13		0.527139	[0.38-0.67] unit decrease	Illumina [7506463] (imputed)	N
878	chr20	38475317	38475318	rs211839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q12		rs211839-?	NR	7E-9				NR [~ 8900000] (imputed)	N
878	chr20	38475317	38475318	rs211839	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q12		rs211839-?	NR	8E-10		0.0127999	[0.0085-0.0171] unit increase	Affymetrix [20259828] (imputed)	N
878	chr20	38485741	38485742	rs6016180	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	20q12	LOC339568, LINC01370	rs6016180-C	NR	2E-7		0.561	[0.35-0.77] unit increase	Illumina [7410776] (imputed)	N
878	chr20	38493340	38493341	rs62210146	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q12		rs62210146-G	0.358351	5E-14		0.017516198	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
878	chr20	38493340	38493341	rs62210146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs62210146-G	0.346404	1E-20				Affymetrix, Illumina [23467995] (imputed)	N
878	chr20	38493340	38493341	rs62210146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q12	NR	rs62210146-G	0.35854	4E-21		0.018447	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
878	chr20	38496423	38496424	rs6071837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q12		rs6071837-G	0.247332	7E-9		0.014891161	[0.0099-0.0199] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr20	38538767	38538768	rs6065171	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	20q12	LOC339568	rs6065171-T	0.49	2E-8				Affymetrix, Illumina [8002429] (imputed)	N
879	chr20	38538767	38538768	rs6065171	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	20q12	LINC01370	rs6065171-?	NR	2E-8		0.0713	[0.046-0.096] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
879	chr20	38538767	38538768	rs6065171	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	20q12	Intergenic	rs6065171-T	0.49	5E-10		0.079	[0.054-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
879	chr20	38538767	38538768	rs6065171	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20q12	LINC01734, LINC01370	rs6065171-T	0.488	6E-9		0.083	[0.056-0.11] unit increase	Affymetrix [~ 11900000] (imputed)	N
879	chr20	38538767	38538768	rs6065171	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	DHX35	rs6065171-?	NR	2E-6	(UDP glucose; UDP galactose)	0.1786864	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
879	chr20	38541546	38541547	rs34985965	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20q12	LINC01734, LINC01370	rs34985965-G	0.7259	7E-9		0.094	[0.063-0.125] unit decrease	Affymetrix [~ 11900000] (imputed)	N
879	chr20	38542568	38542569	rs17803745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20q12		rs17803745-T	NR	6E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
879	chr20	38542568	38542569	rs17803745	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	20q12	DHX35, MAFB	rs17803745-C	0.66	1E-8		5.69	z-score increase	Affymetrix [4314223] (imputed)	N
879	chr20	38548976	38548977	rs6028718	29118346	Sakamoto Y	2017-11-08	Sci Rep	Genome-wide Association Study of Idiopathic Osteonecrosis of the Femoral Head.	Idiopathic osteonecrosis of the femoral head	1,547 Japanese ancestry cases, 59,103 Japanese ancestry controls	NA	20q12	LINC01370	rs6028718-?	0.521	7E-14		1.32	[1.21-1.46]	Illumina [525208]	N
879	chr20	38552077	38552078	rs2224538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q12		rs2224538-C	NR	1E-23		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
879	chr20	38552077	38552078	rs2224538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q12		rs2224538-C	NR	5E-14		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
879	chr20	38552077	38552078	rs2224538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q12		rs2224538-C	NR	4E-25		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
879	chr20	38552077	38552078	rs2224538	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q12	intergenic	rs2224538-T	0.6362	6E-25		0.0204	[0.016-0.024] unit increase	Affymetrix [18391927] (imputed)	N
879	chr20	38552077	38552078	rs2224538	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs2224538-?	NR	4E-29				NR [~ 8900000] (imputed)	N
879	chr20	38552077	38552078	rs2224538	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q12	HSPE1P1	rs2224538-T	0.6388	9E-6		0.0313	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
879	chr20	38552077	38552078	rs2224538	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20q12	MAFB	rs2224538-T	0.646	2E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
879	chr20	38552106	38552107	rs2224539	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	20q12		rs2224539-A	0.584	4E-20		0.1	[-0.13--0.08] % decrease	Affymetrix [NR] (imputed)	N
879	chr20	38552106	38552107	rs2224539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q12		rs2224539-T	0.416483	5E-17		0.018944519	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr20	38552106	38552107	rs2224539	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q12		rs2224539-T	0.416405	7E-17		0.01899007	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38552106	38552107	rs2224539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs2224539-T	0.413379	1E-29				Affymetrix, Illumina [24246363] (imputed)	N
879	chr20	38552106	38552107	rs2224539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q12	NR	rs2224539-T	0.416017	8E-29		0.020601	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
879	chr20	38552106	38552107	rs2224539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q12		rs2224539-?	NR	2E-16				NR [~ 8900000] (imputed)	N
879	chr20	38552106	38552107	rs2224539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q12	intergenic	rs2224539-T	0.416	1E-9		0.02220928	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38552106	38552107	rs2224539	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q12	intergenic	rs2224539-T	0.4158	3E-10		0.02296433	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38552270	38552271	rs6124196	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Prepulse inhibition of the startle response	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	20q12	intergenic	rs6124196-T	NR	7E-6		8.341849	[4.64-12.05] unit decrease	Illumina [> 6200000] (imputed)	N
879	chr20	38553493	38553493	rs34294182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q12		rs34294182-AC	0.486984	6E-9		0.011792	[0.0078-0.0158] unit decrease	Illumina [13479295] (imputed)	N
879	chr20	38555807	38555808	rs2208649	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q12	NR	rs2208649-A	0.305034	1E-15		0.0595723	[0.045-0.074] unit decrease	Affymetrix [17914406] (imputed)	N
879	chr20	38556465	38556466	rs55837381	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q12	MAFB	rs55837381-G	0.745631	1E-8		0.0131954	[0.0087-0.0177] unit increase	Affymetrix [NR] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.40828	3E-36		0.02860158	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408266	9E-31		0.026235113	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408271	3E-13		0.016749844	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408159	5E-20		0.0228581	[0.019-0.027] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408192	2E-14		0.017254306	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.40827	1E-21		0.021862812	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408181	1E-41		0.030603474	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q12	HSPE1P1	rs2145943-G	0.408158	1E-37		0.029050723	[0.025-0.033] unit increase	Affymetrix [93095623] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs2145943-G	0.409815	4E-18				Affymetrix, Illumina [20825802] (imputed)	N
879	chr20	38563244	38563245	rs2145943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q12	NR	rs2145943-G	0.407789	3E-19		0.01773	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4077	5E-16		0.02980376	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4078	3E-13		0.02684877	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4077	3E-10		0.02278631	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4078	7E-14		0.02725825	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4078	3E-20		0.03386097	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38563244	38563245	rs2145943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20q12	HSPE1P1	rs2145943-G	0.4078	7E-19		0.03261346	[0.025-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
879	chr20	38572413	38572414	rs55734731	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	20q12	HSPEP1	rs55734731-?	0.124	4E-7	(S-CT concentration, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
879	chr20	38590328	38590329	rs73126576	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20q12	LOC339568, MAFB	rs73126576-T	0.02	5E-7		0.2897	[0.18-0.4] unit increase	Illumina [~ 9000000] (imputed)	N
879	chr20	38590328	38590329	rs73126576	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20q12	LOC339568, MAFB	rs73126576-T	0.02	1E-6	(EA)	0.2856	[0.17-0.4] unit increase	Illumina [~ 9000000] (imputed)	N
879	chr20	38621455	38621456	rs6071887	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	20q12	Intergenic	rs6071887-A	0.216	6E-7		1.11	[NR]	Illumina [at least 7182761] (imputed)	N
879	chr20	38634830	38634831	rs6129460	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	DHX35	rs6129460-?	NR	4E-6	(lysine)	0.18169512	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
879	chr20	38644557	38644558	rs8120917	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q12	MAFB	rs8120917-A	0.0040	6E-6	(Testosterone )	0.03	[NR] ng/mL increase	Illumina [899892]	N
879	chr20	38659793	38659794	rs66483671	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	20q12	NR	rs66483671-G	0.28	8E-6		1.08	[1.04-1.12]	Illumina [8468885] (imputed)	N
880	chr20	38685540	38685541	rs2870137	21993531	Kuparinen T	2011-10-13	Genes Immun	Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response.	Cytomegalovirus antibody response	1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals	NA	20q12	intergenic	rs2870137-A	0.12	3E-6		0.256	[0.15-0.36] unit decrease	Illumina [546677]	N
880	chr20	38721375	38721376	rs6016252	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q12	NR	rs6016252-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
880	chr20	38725185	38725186	rs55970365	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	20q12	intergenic	rs55970365-C	NR	4E-6		1.923077	[NR]	Illumina [up to 9792010] (imputed)	N
880	chr20	38746730	38746731	rs6129493	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q12	LINC01370	rs6129493-A	0.7233	3E-10		0.0131048	[0.009-0.0172] unit increase	NR [13737936] (imputed)	N
880	chr20	38746730	38746731	rs6129493	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q12		rs6129493-?	NR	8E-12				NR [~ 8900000] (imputed)	N
880	chr20	38754705	38754705	rs572186767	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q12		rs572186767-?	NR	3E-12		0.0164004	[0.012-0.021] unit increase	Affymetrix [20259828] (imputed)	N
881	chr20	38799055	38799056	rs76014215	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs76014215-T	0.01045	2E-9	(S100A9)	0.2853	NR unit decrease	Illumina [1671387] (imputed)	N
881	chr20	38820804	38820805	rs6028945	18615156	Liu C	2008-07-10	Mol Med	Genome-wide association scan identifies candidate polymorphisms associated with differential response to anti-TNF treatment in rheumatoid arthritis.	Response to TNF antagonist treatment	89 European ancestry cases	NA	20q12	MAFB	rs6028945-T	0.12	2E-7				Illumina [283348]	N
881	chr20	38835773	38835774	rs1406967	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs1406967-?	NR	6E-13				NR [~ 8900000] (imputed)	N
881	chr20	38845984	38845985	rs6129521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q12	RP1-191L6.2	rs6129521-A	NR	2E-8		0.024182	[0.016-0.033] unit increase	Affymetrix [323123] (imputed)	N
881	chr20	38859989	38859990	rs75000995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs75000995-A	NR	9E-10		0.0394	[0.027-0.052] unit increase	Affymetrix [9000000] (imputed)	N
881	chr20	38859989	38859990	rs75000995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs75000995-A	NR	1E-10		0.0416	[0.029-0.054] unit increase	Affymetrix [9000000] (imputed)	N
881	chr20	38882552	38882553	rs6028981	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs6028981-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
881	chr20	38886399	38886400	rs6065223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs6065223-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
881	chr20	38904202	38904203	rs6129564	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Cranial base width	2,447 European ancestry individuals	671 European ancestry individuals	20q12	Intergenic	rs6129564-A	0.1163	2E-9		1.21	[0.83-1.59] unit decrease	Illumina [34985077] (imputed)	N
881	chr20	38905822	38905823	rs6101934	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	TOP1	rs6101934-?	NR	8E-6	(ureidopropionic acid)	0.41237226	[0.23-0.59] unit decrease	Affymetrix [at least 2500000] (imputed)	N
881	chr20	38910696	38910697	rs7509102	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	20q12	LINC01370, MAFB	rs7509102-?	NR	3E-13		0.04309	[0.032-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
881	chr20	38917694	38917695	rs13036892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	20q12		rs13036892-G	0.15252	5E-13		0.0376288	[0.027-0.048] unit decrease	Illumina [13477433] (imputed)	N
882	chr20	38937980	38937980	rs151165788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	20q12		rs151165788-AAT	0.152079	1E-8		0.0300829	[0.02-0.04] unit decrease	Illumina [13474682] (imputed)	N
882	chr20	38948849	38948850	rs66739327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q12		rs66739327-T	NR	6E-16		0.0392	[0.03-0.049] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
882	chr20	38966612	38966612	rs146455318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	20q12		rs146455318-ATCAGGAGGCCATGAG	NR	6E-12		0.0333	[0.024-0.043] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
882	chr20	39028435	39028436	rs8124695	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	20q12	AL049691.1, MAFB	rs8124695-A	0.1	8E-10		1.48	[1.30-1.68]	Illumina [234939]	N
882	chr20	39038827	39038828	rs6016348	21221126	Shen Y	2011-01-11	Pharmacogenomics J	Genome-wide association study of serious blistering skin rash caused by drugs.	Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN)	up to 72 European ancestry cases, up to 4,251 European ancestry controls	NA	20q12	MAFB	rs6016348-?	NR	1E-6		2.9	[1.9-4.5]	Illumina [up to 1000000]	N
883	chr20	39091486	39091487	rs2902940	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q12	SNORD112	rs2902940-G	NR	7E-9		0.0176319	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
883	chr20	39091486	39091487	rs2902940	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	MAFB	rs2902940-G	0.30	2E-11		0.027	[NR] unit decrease	NR [NR] (imputed)	N
883	chr20	39091486	39091487	rs2902940	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	MAFB	rs2902940-G	0.3	9E-10		0.024	[NR] unit decrease	NR [NR] (imputed)	N
883	chr20	39091486	39091487	rs2902940	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	20q12	MAFB	rs2902940-G	0.33	1E-8		0.98	[0.61-1.35] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
883	chr20	39091486	39091487	rs2902940	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q12	MAFB	rs2902940-G	0.29	6E-11		1.38	[0.97-1.79] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
883	chr20	39091513	39091514	rs2902941	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	20q12		rs2902941-G	0.647212	3E-23		1.0453134	[1.04-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
883	chr20	39091891	39091892	rs2902942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q12		rs2902942-A	NR	3E-29		0.0259	[0.021-0.03] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
883	chr20	39092894	39092895	rs2143877	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q12	DHX35, MAFB	rs2143877-A	0.69	2E-19		9.03	z-score increase	Affymetrix [4311822] (imputed)	N
883	chr20	39093472	39093473	rs73118985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs73118985-C	NR	5E-12		0.0415	[0.03-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39093472	39093473	rs73118985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs73118985-C	NR	4E-11		0.0396	[0.028-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39093472	39093473	rs73118985	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs73118985-C	NR	2E-10		0.0383	[0.027-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39102877	39102878	rs62210619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q12		rs62210619-?	NR	4E-8				NR [~ 8900000] (imputed)	N
883	chr20	39103881	39103882	rs6029130	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	20q12	MAFB	rs6029130-T	0.2874	4E-8		0.0348	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
883	chr20	39105869	39105870	rs74629672	30134803	Matana A	2018-04-11	Mol Med	Genome-wide meta-analysis identifies novel loci associated with parathyroid hormone level.	Plasma parathyroid hormone levels	806 Korculan (founder/genetic isolate) individuals, 831 Vis (founder/genetic isolate) individuals, 959 Croatian ancestry individuals	NA	20q12	MAFB	rs74629672-T	0.94	2E-6	(female)	0.43	[0.25-0.61] unit increase	Illumina [7411206] (imputed)	N
883	chr20	39119601	39119602	rs56202412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q12	NR	rs56202412-A	0.081936	4E-10		0.025403233	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
883	chr20	39119601	39119602	rs56202412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q12		rs56202412-A	0.081924	2E-10		0.026147125	[0.018-0.034] unit increase	Affymetrix [93095623] (imputed)	N
883	chr20	39124407	39124408	rs6029148	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	20q12	MAFB	rs6029148-A	0.071	6E-12		0.046	[0.033-0.058] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
883	chr20	39125904	39125905	rs6029150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs6029150-G	NR	5E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39125904	39125905	rs6029150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q12	NR	rs6029150-G	NR	3E-11		0.0163	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q12		rs2207132-G	0.966868	1E-8		0.0654458	[0.043-0.088] unit increase	NR [11722792] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	1E-19		0.061	[0.048-0.074] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	9E-97		0.1404	[0.13-0.15] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	2E-9		0.0407	[0.028-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	8E-31		0.0777	[0.065-0.091] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	3E-108		0.1488	[0.14-0.16] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	7E-11		0.044	[0.031-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	9E-14		0.0547	[0.04-0.069] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	7E-11		0.044	[0.031-0.057] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	2E-86		0.1328	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	20q12	NR	rs2207132-A	NR	1E-12		0.0478	[0.035-0.061] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q12	LINC01370, MAFB	rs2207132-?		3E-27		0.1677	[0.14-0.2] unit decrease	Illumina [31500000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	20q12		rs2207132-G	0.96711	1E-11		0.037	[0.025-0.049] unit decrease	NR [7250403] (imputed)	N
883	chr20	39142515	39142516	rs2207132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q12	NR	rs2207132-G	0.96632	9E-18		0.0276218	[0.021-0.034] unit increase	Affymetrix [16585854] (imputed)	N
883	chr20	39142515	39142516	rs2207132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q12	NR	rs2207132-G	0.96632	2E-9		0.0227218	[0.015-0.03] unit increase	Affymetrix [16585866] (imputed)	N
883	chr20	39142515	39142516	rs2207132	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q12	NR	rs2207132-G	0.966994	4E-17		0.0470076	[0.036-0.058] unit decrease	NR [NR]	N
883	chr20	39142515	39142516	rs2207132	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	20q12	SNORD112	rs2207132-A	0.0335157	1E-24		0.15938912	[0.13-0.19] unit increase	Affymetrix [7288503] (imputed)	N
883	chr20	39142515	39142516	rs2207132	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q12	intergenic	rs2207132-A	0.0275	2E-12		0.0833	[0.06-0.106] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q12	NR	rs2207132-A	0.032	5E-17		0.047	[0.036-0.058] unit increase	NR [~ 27400000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q12	NR	rs2207132-A	0.032	2E-7		0.0292	[0.018-0.04] unit increase	NR [~ 27400000] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	NR	7E-6		0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	0.963	7E-6	(EA)	0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	NR	2E-22		0.119	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	0.963	2E-22	(EA)	0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	NR	1E-21		0.12	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39142515	39142516	rs2207132	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs2207132-G	0.963	1E-21	(EA)	0.121	unit decrease	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39144285	39144286	rs6129620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q12		rs6129620-T	0.663285	4E-8		0.02324	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
883	chr20	39151914	39151915	rs62210638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs62210638-G	NR	3E-10		0.0235	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39151914	39151915	rs62210638	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs62210638-G	NR	2E-10		0.0239	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
883	chr20	39154094	39154095	rs6016373	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	20q12	NR	rs6016373-A	0.41	9E-15		0.026	[0.02-0.032] z score decrease	Affymetrix [up to 10400000] (imputed)	N
883	chr20	39154094	39154095	rs6016373	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6016373-A	NR	3E-6		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39154094	39154095	rs6016373	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6016373-A	NR	1E-16		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39154094	39154095	rs6016373	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6016373-A	0.616	1E-13	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39154094	39154095	rs6016373	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6016373-A	NR	3E-18		0.038	unit increase	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39154094	39154095	rs6016373	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6016373-A	0.616	1E-15	(EA)	0.039	unit increase	Affymetrix [at least 7091467] (imputed)	N
883	chr20	39159118	39159119	rs1012167	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Dyslipidemia	30,244 European ancestry cases, 26,393 European ancestry controls	NA	20q12		rs1012167-C	0.387	3E-8		0.93		Affymetrix [15679186] (imputed)	N
883	chr20	39159118	39159119	rs1012167	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q12	MAFB	rs1012167-C	0.400697	1E-19		0.024145	[0.019-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
883	chr20	39159118	39159119	rs1012167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q12		rs1012167-?	NR	3E-9				NR [~ 8900000] (imputed)	N
883	chr20	39165691	39165692	rs117113213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q12		rs117113213-A	NR	2E-18		0.0584	[0.045-0.071] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
883	chr20	39165691	39165692	rs117113213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q12	SNORD112	rs117113213-A	NR	1E-8		0.0506939	[0.033-0.068] unit decrease	Affymetrix [323123] (imputed)	N
883	chr20	39165691	39165692	rs117113213	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	20q12		rs117113213-A	0.048	3E-12		0.1719	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
883	chr20	39165691	39165692	rs117113213	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	20q12	CHD6	rs117113213-?	NR	5E-14		0.0564	[0.043-0.07] unit increase	Affymetrix [5701386] (imputed)	N
883	chr20	39167591	39167592	rs6129624	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs6129624-G	0.664768	1E-8		0.0242913	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
883	chr20	39172727	39172728	rs6016377	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	20q12	NR	rs6016377-T	0.43	2E-9		0.023046913	[0.015-0.031] unit increase	NR [1977400] (imputed)	N
883	chr20	39172727	39172728	rs6016377	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	20q12	MAFB	rs6016377-T	0.45	4E-10		0.0239	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
883	chr20	39173856	39173857	rs7260871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q12	MAFB	rs7260871-A	0.96325	2E-8		0.0323484	[0.021-0.044] unit increase	Affymetrix [NR] (imputed)	N
883	chr20	39175028	39175029	rs6124249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q12		rs6124249-T	0.684863	5E-9		0.0250942	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
883	chr20	39175028	39175029	rs6124249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q12		rs6124249-T	0.684863	2E-11		0.0286091	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
883	chr20	39175028	39175029	rs6124249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q12		rs6124249-T	0.684863	5E-10		0.0271723	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
883	chr20	39175028	39175029	rs6124249	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q12		rs6124249-T	0.684863	6E-9		0.0250135	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
883	chr20	39177540	39177541	rs56265363	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q12	NR	rs56265363-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
883	chr20	39178922	39178923	rs6029180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q12		rs6029180-G	NR	3E-11		0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
883	chr20	39178922	39178923	rs6029180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q12		rs6029180-G	NR	2E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
883	chr20	39178922	39178923	rs6029180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q12	SNORD112	rs6029180-G	NR	2E-15		0.0243276	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
883	chr20	39178922	39178923	rs6029180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q12	SNORD112	rs6029180-G	NR	4E-19		0.0274134	[0.021-0.033] unit decrease	Affymetrix [321169] (imputed)	N
883	chr20	39178922	39178923	rs6029180	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	20q12		rs6029180-G	0.33	2E-14		0.015	mmol/L decrease	NR [NR] (imputed)	N
883	chr20	39178922	39178923	rs6029180	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	20q12		rs6029180-G	0.33	3E-16				NR [NR] (imputed)	N
883	chr20	39178922	39178923	rs6029180	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	20q12		rs6029180-G	0.33	2E-8		0.009	% increase	NR [NR] (imputed)	N
883	chr20	39178922	39178923	rs6029180	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	20q12		rs6029180-G	0.33	6E-10		0.013	U/L decrease	NR [NR] (imputed)	N
883	chr20	39178922	39178923	rs6029180	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q12	MAFB	rs6029180-A	0.673959	3E-8		0.00818774	[0.0053-0.0111] unit decrease	Affymetrix [12370749]	N
883	chr20	39178922	39178923	rs6029180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs6029180-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
883	chr20	39178922	39178923	rs6029180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q12	NR	rs6029180-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-21		0.114794	[0.091-0.139] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q12		rs1883711-G	0.968786	4E-10		0.0713017	[0.049-0.094] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-11		0.0761379	[0.053-0.099] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-12		0.0824148	[0.059-0.106] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-8		0.0663918	[0.044-0.089] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-9		0.0710499	[0.048-0.094] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-10		0.0752509	[0.052-0.098] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-12		0.0824719	[0.06-0.105] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-11		0.0796235	[0.057-0.103] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-11		0.0804991	[0.057-0.104] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-10		0.073768	[0.05-0.097] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-9		0.0672427	[0.044-0.09] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-13		0.0852293	[0.062-0.109] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-9		0.0711938	[0.048-0.094] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-12		0.0838288	[0.061-0.107] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-13		0.0860121	[0.063-0.109] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-10		0.0735271	[0.05-0.097] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-10		0.0748431	[0.052-0.098] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-10		0.0738133	[0.051-0.096] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-19		0.106381	[0.083-0.13] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-11		0.0788782	[0.056-0.102] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-19		0.106038	[0.083-0.129] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-14		0.0937438	[0.07-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-17		0.102972	[0.079-0.127] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-16		0.0994805	[0.076-0.123] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-15		0.0929854	[0.07-0.116] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-12		0.0819343	[0.059-0.105] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-14		0.0901554	[0.067-0.114] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-15		0.0952219	[0.072-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-15		0.0944599	[0.071-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-13		0.0872248	[0.064-0.11] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-15		0.0921493	[0.069-0.115] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	2E-13		0.0880153	[0.065-0.111] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-11		0.0774081	[0.054-0.1] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-17		0.101607	[0.078-0.125] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-12		0.0820419	[0.059-0.105] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	3E-11		0.0794341	[0.056-0.103] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-19		0.108501	[0.085-0.132] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	9E-14		0.0890198	[0.066-0.112] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	4E-15		0.092425	[0.069-0.116] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q12		rs1883711-G	0.968772	3E-13		0.0885507	[0.065-0.112] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-14		0.0905535	[0.067-0.114] unit increase	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q12		rs1883711-G	0.96879	2E-12		0.0830562	[0.06-0.106] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-19		0.106989	[0.084-0.13] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-13		0.0852758	[0.062-0.108] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-20		0.112772	[0.089-0.136] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-10		0.0780978	[0.054-0.102] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-19		0.109602	[0.086-0.133] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-16		0.0977856	[0.074-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-13		0.086429	[0.064-0.109] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	9E-15		0.0934104	[0.07-0.117] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-9		0.0705198	[0.048-0.093] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-18		0.105493	[0.082-0.129] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-15		0.0943037	[0.071-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-14		0.0892103	[0.066-0.112] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	5E-8		0.0624893	[0.04-0.085] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	2E-14		0.0905557	[0.067-0.114] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	6E-11		0.0783845	[0.055-0.102] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	20q12		rs1883711-G	0.968803	2E-13		0.0878257	[0.064-0.111] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-14		0.0913349	[0.068-0.115] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	20q12		rs1883711-G	0.968825	5E-13		0.0876634	[0.064-0.111] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q12		rs1883711-G	0.96879	3E-10		0.0758846	[0.052-0.099] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-19		0.106358	[0.083-0.13] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-14		0.08911	[0.066-0.112] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-20		0.11158	[0.088-0.135] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-19		0.109082	[0.085-0.133] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-12		0.0831615	[0.059-0.107] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-15		0.091137	[0.068-0.114] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-11		0.0780362	[0.055-0.101] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-10		0.0723621	[0.049-0.095] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-20		0.109732	[0.086-0.133] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-11		0.0791582	[0.056-0.103] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-12		0.0813796	[0.058-0.104] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-19		0.106985	[0.084-0.13] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-12		0.080714	[0.058-0.104] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-18		0.103477	[0.08-0.127] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-16		0.100123	[0.076-0.124] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-19		0.107765	[0.084-0.131] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	9E-16		0.0977402	[0.074-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-12		0.0834276	[0.061-0.106] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-16		0.0984966	[0.075-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-9		0.0678605	[0.045-0.091] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-19		0.109009	[0.085-0.133] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	9E-17		0.100855	[0.077-0.125] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of IDL particles	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-17		0.0999769	[0.076-0.124] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-14		0.0913953	[0.068-0.115] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-16		0.098633	[0.075-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-15		0.0937119	[0.071-0.117] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-19		0.106348	[0.083-0.13] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-23		0.118966	[0.095-0.143] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-17		0.102717	[0.079-0.127] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-15		0.0947988	[0.071-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-17		0.101104	[0.077-0.125] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-19		0.107063	[0.084-0.131] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-13		0.0875553	[0.064-0.111] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	9E-12		0.0798663	[0.057-0.103] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-21		0.1158	[0.092-0.14] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-15		0.0946943	[0.071-0.118] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	2E-11		0.0790068	[0.056-0.102] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-9		0.0742081	[0.05-0.098] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-17		0.0984921	[0.075-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	5E-17		0.0991686	[0.076-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-22		0.117182	[0.093-0.141] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-15		0.0960806	[0.072-0.12] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-17		0.103572	[0.08-0.127] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	7E-16		0.0981439	[0.074-0.122] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	3E-17		0.0999535	[0.077-0.123] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	1E-12		0.0854783	[0.062-0.109] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	6E-11		0.0766297	[0.054-0.1] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	8E-12		0.0801221	[0.057-0.103] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	20q12		rs1883711-G	0.968793	4E-18		0.105018	[0.081-0.129] unit decrease	NR [11722792] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20q12		rs1883711-C	NR	9E-50		0.1009	[0.088-0.114] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	20q12		rs1883711-C	NR	2E-24		0.1699	[0.14-0.2] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20q12		rs1883711-C	NR	4E-55		0.108	[0.094-0.122] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q12		rs1883711-C	NR	4E-10		0.0444	[0.03-0.058] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20q12		rs1883711-C	NR	3E-13		0.0477	[0.035-0.061] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	SNORD112	rs1883711-C	NR	4E-22		0.0794235	[0.063-0.096] unit increase	Affymetrix [319769] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	SNORD112	rs1883711-C	NR	4E-23		0.0813922	[0.065-0.097] unit increase	Affymetrix [319769] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q12	SNORD112	rs1883711-C	NR	4E-17		0.0696928	[0.053-0.086] unit increase	Affymetrix [321114] (imputed)	N
883	chr20	39179821	39179822	rs1883711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q12	SNORD112	rs1883711-C	NR	1E-19		0.0750862	[0.059-0.091] unit increase	Affymetrix [321169] (imputed)	N
883	chr20	39179821	39179822	rs1883711	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q12	MAFB	rs1883711-G	0.968576	9E-17		0.00924419	[0.007-0.0115] unit decrease	Affymetrix [13995440] (imputed)	N
883	chr20	39179821	39179822	rs1883711	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q12	LINC01370, MAFB	rs1883711-?		7E-24		0.1602	[0.13-0.19] unit decrease	Illumina [31500000] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q12		rs1883711-C	0.0312480000000001	9E-13		0.047464672	[0.034-0.06] unit increase	Affymetrix [93095623] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20q12	NR	rs1883711-G	0.968555	4E-171		0.156174	[0.15-0.17] unit decrease	Affymetrix [15000001]	N
883	chr20	39179821	39179822	rs1883711	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q12	MAFB	rs1883711-G	0.968596	1E-24		0.0597392	[0.048-0.071] unit decrease	Affymetrix [NR] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q12	MAFB	rs1883711-G	0.968588	1E-63		0.102599	[0.091-0.115] unit decrease	Affymetrix [NR] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q12	MAFB	rs1883711-G	0.968588	3E-54		0.0942507	[0.082-0.106] unit decrease	Affymetrix [NR] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20q12	CHD6	rs1883711-?	NR	4E-96		0.1557	[0.14-0.17] unit increase	Affymetrix [5701386] (imputed)	N
883	chr20	39179821	39179822	rs1883711	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q12	NR	rs1883711-G	0.968358	2E-9		0.0499885	[0.034-0.066] unit increase	Affymetrix [16580851] (imputed)	N
883	chr20	39179821	39179822	rs1883711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs1883711-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
883	chr20	39179821	39179822	rs1883711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q12		rs1883711-?	NR	8E-10				NR [~ 8900000] (imputed)	N
883	chr20	39179821	39179822	rs1883711	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q12	intergenic	rs1883711-C	0.0268	9E-21		0.1089	[0.086-0.132] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
883	chr20	39179821	39179822	rs1883711	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	20q12	MAFB	rs1883711-C	0.06	2E-11	(Phospholipids in very small VLDL)	0.17	[0.13-0.21] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
883	chr20	39179821	39179822	rs1883711	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	20q12	MAFB	rs1883711-C	0.04	4E-16		0.153	[0.12-0.19] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
883	chr20	39179821	39179822	rs1883711	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	20q12	MAFB	rs1883711-C	0.04	2E-15		0.147	[0.11-0.18] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
883	chr20	39179977	39179978	rs1883712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs1883712-T	NR	8E-10		0.0552	[0.038-0.073] unit increase	Affymetrix [9000000] (imputed)	N
883	chr20	39180435	39180436	rs6016381	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	20q12		rs6016381-T	0.5913	2E-11		1.0264	[0.73-1.33] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
884	chr20	39192302	39192303	rs191064657	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q12	MAFB	rs191064657-C	0.963325	9E-10		0.0350535	[0.024-0.046] unit increase	Affymetrix [NR] (imputed)	N
884	chr20	39203781	39203782	rs2865505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	MAFB	rs2865505-A	NR	7E-16		0.0246649	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
884	chr20	39203781	39203782	rs2865505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	MAFB	rs2865505-A	NR	3E-16		0.0249557	[0.019-0.031] unit decrease	Affymetrix [319769] (imputed)	N
884	chr20	39203781	39203782	rs2865505	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q12		rs2865505-?	NR	3E-19				NR [~ 8900000] (imputed)	N
884	chr20	39204272	39204273	rs55965801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q12		rs55965801-?	NR	4E-9				NR [~ 8900000] (imputed)	N
884	chr20	39207396	39207397	rs79733107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q12		rs79733107-G	0.064662	4E-10		0.028428534	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr20	39207396	39207397	rs79733107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q12		rs79733107-G	0.064668	3E-9		0.02705865	[0.018-0.036] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39221726	39221727	rs182235288	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	20q12	NR	rs182235288-G		8E-6		0.9021	[0.49-1.31] SD units decrease	NR [10700000] (imputed)	N
884	chr20	39221982	39221983	rs6093370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q12		rs6093370-T	0.064615	7E-19		0.040754728	[0.032-0.05] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39223486	39223487	rs17820549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q12		rs17820549-C	0.064701	3E-12		0.03263534	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39228660	39228661	rs60899213	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	20q12	NR	rs60899213-T	0.01217	3E-7		0.7122	[0.44-0.98] unit decrease	Illumina [10677593] (imputed)	N
884	chr20	39228783	39228784	rs6102059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs6102059-T	NR	1E-33		0.0308	[0.026-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39228783	39228784	rs6102059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q12	NR	rs6102059-T	NR	3E-16		0.0208	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39228783	39228784	rs6102059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs6102059-T	NR	1E-36		0.0323	[0.027-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39228783	39228784	rs6102059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs6102059-T	NR	4E-27		0.0276	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39228783	39228784	rs6102059	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	LDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q12	MAFB	rs6102059-T	0.32	4E-9		0.06	[0.03-0.10] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
884	chr20	39231117	39231118	rs6129648	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q12		rs6129648-?	NR	2E-11		0.0140631	[0.0099-0.0182] unit increase	NR [6912294] (imputed)	N
884	chr20	39243612	39243613	rs6029211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20q12		rs6029211-C	NR	2E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
884	chr20	39246609	39246610	rs6016392	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	20q12		rs6016392-A	0.5	1E-6				Illumina [6761961] (imputed)	N
884	chr20	39248264	39248265	rs6065254	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	20q12	NR	rs6065254-?	NR	2E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
884	chr20	39255079	39255080	rs6072078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q12		rs6072078-G	0.436976	2E-10		0.0145711675	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39257871	39257872	rs2865511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q12		rs2865511-G	NR	9E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
884	chr20	39259277	39259278	rs6029234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q12		rs6029234-C	NR	9E-25		0.0206	[0.017-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
884	chr20	39259277	39259278	rs6029234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q12	NR	rs6029234-C	0.62629	2E-23		0.02299523	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39259277	39259278	rs6029234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs6029234-C	0.594701	9E-38				Affymetrix, Illumina [24649327] (imputed)	N
884	chr20	39259277	39259278	rs6029234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q12	NR	rs6029234-C	0.624198	8E-37		0.024169	[0.02-0.028] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
884	chr20	39260926	39260927	rs6072080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q12	NR	rs6072080-T	0.585279	2E-24		0.019842	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
884	chr20	39261053	39261054	rs6072081	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	20q12	MAFB	rs6072081-?	NR	9E-13		1.3513513	[1.23-1.47] (GENEVA cohort)	Illumina [6090031] (imputed)	N
884	chr20	39261053	39261054	rs6072081	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	20q12	MAFB	rs6072081-?	NR	2E-12		1.4285715	[1.28-1.59] (GENEVA cohort)	Illumina [6090031] (imputed)	N
884	chr20	39265736	39265737	rs6029242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs6029242-T	0.373848	2E-11				Affymetrix, Illumina [22063850] (imputed)	N
884	chr20	39265736	39265737	rs6029242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q12	NR	rs6029242-T	0.375376	1E-12		0.013854	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
884	chr20	39265736	39265737	rs6029242	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q12		rs6029242-?	NR	6E-13				NR [~ 8900000] (imputed)	N
884	chr20	39268184	39268185	rs6102074	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	20q12	intergenic	rs6102074-T	0.6182	3E-11		0.02478046	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr20	39268515	39268516	rs17820943	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft lip	945 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,273 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	20q12	MAFB	rs17820943-C	0.544	2E-17		1.4245013	NR	Illumina [at least 870261] (imputed)	N
884	chr20	39269073	39269074	rs13041247	25775280	Sun Y	2015-03-16	Nat Commun	Genome-wide association study identifies a new susceptibility locus for cleft lip with or without a cleft palate.	Nonsyndromic cleft lip with or without cleft palate	858 Chinese ancestry cases, 1,248 Chinese ancestry controls	1,663 Chinese ancestry cases,  1,874 Chinese ancestry controls	20q12	MAFB	rs13041247-T	NR	2E-11		1.32	[1.20-1.41]	Affymetrix [842556]	N
884	chr20	39269073	39269074	rs13041247	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	20q12	NR	rs13041247-T	NR	6E-9	(Meta-All, NSCL/P)	1.19	[1.06-1.35]	NR [497084]	N
884	chr20	39270794	39270795	rs6124259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q12		rs6124259-A	0.617712	1E-14		0.017636344	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39271005	39271006	rs11698548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q12		rs11698548-G	NR	1E-19		0.022	[0.017-0.027] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
884	chr20	39271005	39271006	rs11698548	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	20q12		rs11698548-A	0.424	2E-15				Affymetrix [10369434] (imputed)	N
884	chr20	39271399	39271400	rs6072084	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q12		rs6072084-A	0.580595	1E-10		0.014557335	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39271399	39271400	rs6072084	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs6072084-A	0.550661	5E-22				Affymetrix, Illumina [23472807] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q12		rs4812447-G	0.440002	1E-13		0.01703267	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q12		rs4812447-G	0.440007	2E-14		0.017653108	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs4812447-G	0.449882	6E-18				Affymetrix, Illumina [24588908] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q12	NR	rs4812447-G	0.440583	2E-17		0.01581	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs4812447-G	0.447647	3E-18				Affymetrix, Illumina [23114412] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q12	NR	rs4812447-G	0.440364	1E-18		0.017142	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs4812447-G	0.447885	5E-29				Affymetrix, Illumina [23467995] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q12	NR	rs4812447-G	0.44038	2E-31		0.022098	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
884	chr20	39272619	39272620	rs4812447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q12	NR	rs4812447-G	0.440221	2E-10		0.012841	[0.0089-0.0168] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
884	chr20	39272619	39272620	rs4812447	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q12	intergenic	rs4812447-G	0.4403	2E-12		0.02550533	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr20	39272736	39272737	rs4812448	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20q12		rs4812448-C	NR	4E-16		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
884	chr20	39272736	39272737	rs4812448	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	20q12		rs4812448-T	0.381	5E-12				Affymetrix [10369434] (imputed)	N
884	chr20	39272736	39272737	rs4812448	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q12		rs4812448-T	0.381605	4E-20		0.021105489	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39272736	39272737	rs4812448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q12		rs4812448-?	NR	1E-34				NR [~ 8900000] (imputed)	N
884	chr20	39272736	39272737	rs4812448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q12		rs4812448-?	NR	1E-10				NR [~ 8900000] (imputed)	N
884	chr20	39272738	39272739	rs4812449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs4812449-G	0.416808	7E-11				Affymetrix, Illumina [19905671] (imputed)	N
884	chr20	39272738	39272739	rs4812449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	20q12	NR	rs4812449-G	0.407197	3E-12		0.014742	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
884	chr20	39272958	39272959	rs4812450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q12		rs4812450-G	0.39939	4E-9		0.013457723	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39275602	39275603	rs6129653	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	20q12	MAFB	rs6129653-A	0.31	9E-12		1.23		Illumina [803202]	N
884	chr20	39276555	39276556	rs2024576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	20q12	NR	rs2024576-T	NR	6E-11		0.0404	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39276555	39276556	rs2024576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q12	NR	rs2024576-T	NR	1E-14		0.0476	[0.035-0.06] unit increase	Affymetrix [9000000] (imputed)	N
884	chr20	39278390	39278391	rs34753522	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	20q12	MAFB	rs34753522-?	NR	1E-10		0.0478	NR L decrease	Affymetrix [9390170] (imputed)	N
884	chr20	39278390	39278391	rs34753522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q12		rs34753522-C	0.356771	2E-22		0.023420494	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
884	chr20	39280361	39280362	rs74435866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs74435866-A	NR	2E-12		0.0205	[0.015-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39280361	39280362	rs74435866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs74435866-A	NR	9E-12		0.0198	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39284774	39284775	rs6029258	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	20q12	MAFB	rs6029258-?	NR	6E-12	(Asian)	1.4705882		Illumina [6090031] (imputed)	N
884	chr20	39284774	39284775	rs6029258	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	20q12	MAFB	rs6029258-?	NR	4E-12	(Asian)	1.5384616	[1.37-1.72]	Illumina [6090031] (imputed)	N
884	chr20	39291783	39291784	rs16989232	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q12	NR	rs16989232-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
884	chr20	39291783	39291784	rs16989232	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q12		rs16989232-?	NR	2E-8				NR [~ 8900000] (imputed)	N
884	chr20	39291783	39291784	rs16989232	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q12	NA	rs16989232-A	0.3864	6E-12		0.0115	[0.0082-0.0148] unit increase	NR [~ 27400000] (imputed)	N
884	chr20	39292073	39292074	rs6072091	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Nose morphology	2,447 European ancestry individuals	671 European ancestry individuals	20q12	intergenic	rs6072091-T	0.2776	2E-7	(Nasal protrusion)	0.2293	[0.12-0.34] unit increase	Illumina [34985077] (imputed)	N
884	chr20	39293831	39293832	rs10485674	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	20q12	intergenic	rs10485674-G	0.017	8E-6				Illumina [331281]	N
884	chr20	39300995	39300996	rs62209872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs62209872-?	NR	3E-8				NR [~ 8900000] (imputed)	N
884	chr20	39311249	39311250	rs73124945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q12		rs73124945-C	NR	7E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
884	chr20	39311249	39311250	rs73124945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q12	MAFB	rs73124945-C	0.17364	2E-10		0.019621113	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr20	39311249	39311250	rs73124945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q12		rs73124945-?	NR	2E-11				NR [~ 8900000] (imputed)	N
884	chr20	39313689	39313690	rs6029273	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q12	MAFB	rs6029273-A	0.83874	5E-21		0.00292633	[0.0023-0.0035] unit increase	Affymetrix [13995440] (imputed)	N
884	chr20	39313689	39313690	rs6029273	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q12	NR	rs6029273-G	NR	5E-18		0.0277	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
884	chr20	39320750	39320751	rs6102095	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	20q12	MAFB	rs6102095-A	0.875	2E-18		1.3368983	[1.25-1.43]	Illumina [238825]	N
885	chr20	39326150	39326151	rs926664	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs926664-G	NR	3E-9		0.0464	[0.031-0.062] unit increase	Affymetrix [9000000] (imputed)	N
885	chr20	39326150	39326151	rs926664	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs926664-G	NR	8E-10		0.0479	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
885	chr20	39326150	39326151	rs926664	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs926664-G	NR	3E-9		0.0462	[0.031-0.061] unit increase	Affymetrix [9000000] (imputed)	N
885	chr20	39344271	39344272	rs3091842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	20q12		rs3091842-A	NR	2E-51		0.094	[0.082-0.106] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
885	chr20	39344271	39344272	rs3091842	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20q12	NR	rs3091842-A	0.04416	2E-47		0.008099	[0.007-0.0092] unit increase	Affymetrix [NR] (imputed)	N
885	chr20	39357464	39357465	rs723080	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	20q12	MAFB	rs723080-C	NR	5E-7		4.754	unit decrease	Affymetrix [4198245] (imputed)	N
885	chr20	39411148	39411149	rs761566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q12	NR	rs761566-T	NR	6E-21		0.0346	[0.027-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr20	39435699	39435700	rs7361259	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	20q12	MAFB	rs7361259-T	NR	5E-6		5.98	[3.26-8.7] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
885	chr20	39439482	39439483	rs4812466	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	20q12	intergenic	rs4812466-T		6E-6		0.2258	unit increase	Illumina [5767231] (imputed)	N
886	chr20	39456738	39456739	rs6029368	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	20q12	MAFB	rs6029368-?	NR	6E-6				Affymetrix [753382]	N
886	chr20	39467980	39467981	rs3764711	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q12		rs3764711-G	NR	2E-10		0.0103	[0.0072-0.0134] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
886	chr20	39471426	39471427	rs6072161	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q12	NR	rs6072161-C	0.573146759127338	3E-7	(IGP22)	0.1589	[0.098-0.22] unit decrease	Illumina [~ 2500000] (imputed)	N
886	chr20	39478532	39478533	rs6102185	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q12	NR	rs6102185-G	0.423097751558326	1E-6	(IGP27)	0.151	[0.09-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
886	chr20	39478532	39478533	rs6102185	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q12	NR	rs6102185-G	0.422812170677362	2E-6	(IGP25)	0.1489	[0.088-0.21] unit increase	Illumina [~ 2500000] (imputed)	N
886	chr20	39478532	39478533	rs6102185	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q12	NR	rs6102185-G	0.422547655372269	5E-6	(IGP34)	0.1429	[0.082-0.204] unit decrease	Illumina [~ 2500000] (imputed)	N
886	chr20	39495251	39495252	rs56117013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q12	NR	rs56117013-A	NR	6E-10		0.0147	[0.01-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
886	chr20	39549234	39549235	rs73909111	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia	144 European ancestry individuals, 57 African American individuals	NA	20q12	TOP1	rs73909111-?	NR	4E-6		4.595	z-score increase	Illumina [1819374] (imputed)	N
887	chr20	39584710	39584711	rs115299670	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20q12	NR	rs115299670-?	NR	7E-6	(AA)	0.5975	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
887	chr20	39616592	39616593	rs6072221	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q12		rs6072221-?	NR	1E-27		0.036988	[0.03-0.044] unit increase	Affymetrix [20259828] (imputed)	N
887	chr20	39620846	39620847	rs6072223	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	20q12		rs6072223-T	0.16	3E-8		0.16	[0.1-0.22] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
887	chr20	39636662	39636663	rs6029516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q12	NR	rs6029516-T	NR	3E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39636662	39636663	rs6029516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q12	NR	rs6029516-T	NR	2E-9		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr20	39640878	39640879	rs6016501	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	Cholesterol, total	1,017 Yoruban ancestry individuals,1,765 Filipino ancestry individuals	188,577 European and other ancestry individuals	20q12	AK023614	rs6016501-?	NR	4E-6	(Filipino)			Illumina [4454201] (imputed)	N
887	chr20	39640970	39640971	rs73121275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs73121275-T	NR	7E-10		0.0301	[0.02-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr20	39640970	39640971	rs73121275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs73121275-T	NR	2E-10		0.031	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr20	39640970	39640971	rs73121275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs73121275-T	NR	2E-9		0.0294	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
887	chr20	39647516	39647517	rs34984215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20q12	NR	rs34984215-A	NR	6E-11		0.0165	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39656341	39656342	rs6072249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q12		rs6072249-G	NR	3E-39		0.0265	[0.023-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
887	chr20	39656341	39656342	rs6072249	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20q12	TOP1	rs6072249-A	0.527732	2E-42		0.00687269	[0.0059-0.0079] unit decrease	Affymetrix [13995440] (imputed)	N
887	chr20	39672617	39672618	rs6029526	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	20q12	NR	rs6029526-?	NR	2E-6		1.759199	[1.03-2.49] unit increase	Illumina [32003504] (imputed)	N
887	chr20	39672617	39672618	rs6029526	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	20q12		rs6029526-A	0.5248	3E-12		1.1061	[0.8-1.42] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
887	chr20	39672617	39672618	rs6029526	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029526-T	NR	2E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
887	chr20	39672617	39672618	rs6029526	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029526-T	0.53	1E-9	(EA)	0.028	unit decrease	Affymetrix [at least 7091467] (imputed)	N
887	chr20	39672617	39672618	rs6029526	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029526-T	NR	3E-11		0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
887	chr20	39672617	39672618	rs6029526	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029526-T	0.53	1E-10	(EA)	0.031	unit decrease	Affymetrix [at least 7091467] (imputed)	N
887	chr20	39672617	39672618	rs6029526	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	TOP1	rs6029526-A	0.47	5E-18		0.044	[NR] unit increase	NR [NR] (imputed)	N
887	chr20	39672617	39672618	rs6029526	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q12	TOP1	rs6029526-A	0.47	1E-16		0.04	[NR] unit increase	NR [NR] (imputed)	N
887	chr20	39672617	39672618	rs6029526	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	LDL cholesterol	95,454 European ancestry individuals	NA	20q12	TOP1	rs6029526-A	0.47	3E-19		1.41	[1.08-1.74] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	3E-10		0.0260314	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-11		0.0278556	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-8		0.0232458	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	6E-11		0.026779	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	3E-11		0.0273399	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	5E-8		0.0218649	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	5E-9		0.0236356	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-8		0.0226259	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol minus HDL-C levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-10		0.0260397	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	9E-9		0.0230277	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	3E-9		0.0244739	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs6016505-C	0.450521	1E-9		0.0244559	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-9		0.0243704	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	5E-12		0.0286163	[0.021-0.037] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-10		0.0262304	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	5E-11		0.0271429	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-8		0.0219064	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-10		0.0265845	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	3E-8		0.0226657	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	9E-12		0.0281709	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-8		0.0229373	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-10		0.0257792	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-10		0.026325	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-8		0.0229738	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-9		0.0241435	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-8		0.0232594	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-9		0.024309	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-8		0.022769	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	6E-9		0.0241174	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	7E-11		0.0268797	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-10		0.0264554	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	7E-10		0.0253942	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-11		0.0280572	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-10		0.0259457	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-8		0.0234683	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	1E-10		0.0265827	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	6E-11		0.0268318	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	5E-11		0.0271665	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	6E-12		0.0284214	[0.02-0.037] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	4E-10		0.025879	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	8E-10		0.0253416	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	7E-11		0.0269768	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	2E-10		0.0259384	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	20q12		rs6016505-C	0.450462	3E-10		0.0261144	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q12	TOP1	rs6016505-T	0.548561	4E-9		0.013067544	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q12	TOP1	rs6016505-T	0.548564	2E-10		0.014102668	[0.0097-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs6016505-T	0.616875	2E-11				Affymetrix, Illumina [24332387] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q12	NR	rs6016505-T	0.547258	8E-14		0.013887	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs6016505-T	0.615194	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
887	chr20	39678288	39678289	rs6016505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q12	NR	rs6016505-T	0.547218	2E-15		0.014733	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
887	chr20	39678288	39678289	rs6016505	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	20q12	TOP1	rs6016505-?		4E-6				Illumina [5908215] (imputed)	N
887	chr20	39678480	39678481	rs76164234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q12		rs76164234-?	NR	8E-12				NR [~ 8900000] (imputed)	N
887	chr20	39681682	39681683	rs8122094	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q12	Intergenic	rs8122094-C	0.7632	2E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
887	chr20	39684854	39684855	rs6129744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs6129744-G	NR	1E-16		0.0266	[0.02-0.033] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39684854	39684855	rs6129744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q12	NR	rs6129744-G	NR	2E-10		0.0215	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39684854	39684855	rs6129744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs6129744-G	NR	3E-18		0.0281	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39684854	39684855	rs6129744	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs6129744-G	NR	5E-17		0.0271	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
887	chr20	39690341	39690342	rs1997833	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs1997833-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
887	chr20	39690341	39690342	rs1997833	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q12	NR	rs1997833-T	0.7071	2E-13		0.0138	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
887	chr20	39690341	39690342	rs1997833	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q12	NA	rs1997833-T	0.7073	4E-11		0.0122	[0.0085-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
887	chr20	39710037	39710038	rs79779579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	20q12		rs79779579-G	0.441394535	1E-11		0.06150283	[0.044-0.079] unit increase	Illumina [13429980] (imputed)	N
887	chr20	39713868	39713869	rs2223745	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q12		rs2223745-G	0.52588	6E-10		0.0254142	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
887	chr20	39713868	39713869	rs2223745	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q12		rs2223745-?	NR	4E-9				NR [~ 8900000] (imputed)	N
888	chr20	39714889	39714890	rs7261376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	TOP1	rs7261376-A	NR	4E-8		0.0223105	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
888	chr20	39714889	39714890	rs7261376	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	TOP1	rs7261376-A	NR	3E-8		0.0224492	[0.014-0.03] unit increase	Affymetrix [319769] (imputed)	N
888	chr20	39724337	39724338	rs6065311	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	LDL cholesterol levels	up to 23,353 African ancestry individuals, 13,171 Asian ancestry individuals, up to 82,522 European ancestry individuals, 6,646 Hispanic individuals	NA	20q12		rs6065311-T	0.469	7E-12		1.0722	[0.77-1.38] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
888	chr20	39724337	39724338	rs6065311	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20q12	TOP1	rs6065311-T	0.54	2E-34	(Trans-ethnic initial)	0.0417	[0.035-0.049] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
888	chr20	39724337	39724338	rs6065311	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20q12	TOP1	rs6065311-T	0.194	3E-6	(Asian initial, BMI unadjusted)	0.0485	[0.028-0.069] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
888	chr20	39724337	39724338	rs6065311	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20q12	MAFB	rs6065311-T	0.54	2E-34	(Trans-ethnic initial)	0.0417	[0.035-0.049] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
888	chr20	39724337	39724338	rs6065311	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	20q12	MAFB	rs6065311-T	0.194	3E-6	(Asian initial, BMI unadjusted)	0.0485	[0.028-0.069] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
888	chr20	39727694	39727695	rs16989541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs16989541-?	NR	1E-15				NR [~ 8900000] (imputed)	N
888	chr20	39736721	39736722	rs4142394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	20q12		rs4142394-C	NR	1E-10		0.0542	[0.038-0.071] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
888	chr20	39742283	39742284	rs73611258	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20q12	TOP1	rs73611258-A	0.6483	4E-10		0.0241	[0.016-0.032] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
888	chr20	39742283	39742284	rs73611258	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	20q12	NR	rs73611258-A	0.3667	5E-6	(women)	0.025	[0.014-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
888	chr20	39743904	39743905	rs6072275	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	20q12	TOP1	rs6072275-G	0.813994	3E-6		0.019287	[0.011-0.027] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
888	chr20	39743904	39743905	rs6072275	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	20q12	TOP1	rs6072275-G	0.813994	2E-10		0.017402	[0.012-0.023] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
888	chr20	39746402	39746403	rs6129760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	20q12		rs6129760-G	NR	3E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
888	chr20	39746402	39746403	rs6129760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q12	TOP1, RP1-1J6.2	rs6129760-G	NR	3E-9		0.0178969	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
888	chr20	39746402	39746403	rs6129760	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	20q12	RP1-1J6.2	rs6129760-G	0.324412	1E-15		0.04779203	[0.036-0.06] unit increase	Affymetrix [7288503] (imputed)	N
888	chr20	39754694	39754695	rs6029549	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	20q12	NR	rs6029549-C	0.4667	5E-23				Affymetrix, Illumina [at least 2500000] (imputed)	N
888	chr20	39755153	39755154	rs6072279	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small LDL	115,082 European ancestry individuals	NA	20q12		rs6072279-G	0.525651	1E-8		0.0235497	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
888	chr20	39755153	39755154	rs6072279	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q12	NR	rs6072279-G	0.526688	7E-12		0.0133158	[0.0095-0.0171] unit decrease	NR [NR]	N
888	chr20	39756055	39756055	rs142846886	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	20q12	NR	rs142846886-TAC	0.38595900000000005	2E-13		0.00965748	[0.007-0.0123] unit increase	Affymetrix [16578495] (imputed)	N
888	chr20	39759835	39759836	rs191257456	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs191257456-G	0.01045	5E-9	(LRRK2)	0.0475	NR unit increase	Illumina [1671387] (imputed)	N
888	chr20	39759835	39759836	rs191257456	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q12	NR	rs191257456-G	0.01045	2E-8	(TTR)	0.03472	NR unit increase	Illumina [1671387] (imputed)	N
888	chr20	39766115	39766116	rs35517142	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q12		rs35517142-T	NR	5E-15		0.0332	[0.025-0.041] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
888	chr20	39774162	39774163	rs3795128	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q12	NR	rs3795128-C	0.48366600000000004	2E-23		0.0103891	[0.0081-0.0127] unit increase	Affymetrix [16582621] (imputed)	N
888	chr20	39774162	39774163	rs3795128	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q12	NR	rs3795128-C	0.48366600000000004	2E-17		0.00977417	[0.0073-0.0122] unit increase	Affymetrix [16582614] (imputed)	N
888	chr20	39774162	39774163	rs3795128	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	20q12	NR	rs3795128-T	0.4998	5E-8		0.060821474	[0.039-0.083] z score increase	NR [1977400] (imputed)	N
888	chr20	39776045	39776046	rs760762	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	20q12	NR	rs760762-?	NR	7E-7				Affymetrix [NR]	N
888	chr20	39776045	39776046	rs760762	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	20q12	NR	rs760762-?	NR	4E-8				Affymetrix [NR]	N
888	chr20	39780931	39780932	rs6093446	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q12	PLCG1	rs6093446-G	0.71222	2E-11		0.014726	[0.01-0.019] unit decrease	Affymetrix [NR] (imputed)	N
888	chr20	39780931	39780932	rs6093446	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q12	PLCG1	rs6093446-G	0.712195	7E-22		0.022143	[0.018-0.027] unit decrease	Affymetrix [NR] (imputed)	N
888	chr20	39780931	39780932	rs6093446	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q12	PLCG1	rs6093446-G	0.712207	7E-24		0.0231647	[0.019-0.028] unit decrease	Affymetrix [NR] (imputed)	N
888	chr20	39780957	39780958	rs35438177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q12	NR	rs35438177-T	NR	6E-12		0.038	[0.027-0.049] unit increase	Affymetrix [9000000] (imputed)	N
888	chr20	39780957	39780958	rs35438177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q12	NR	rs35438177-T	NR	3E-13		0.0403	[0.03-0.051] unit increase	Affymetrix [9000000] (imputed)	N
888	chr20	39780957	39780958	rs35438177	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q12	NR	rs35438177-T	NR	2E-11		0.0372	[0.026-0.048] unit increase	Affymetrix [9000000] (imputed)	N
888	chr20	39785844	39785844	rs370692925	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	20q12		rs370692925-CTG	0.478265	3E-8		0.0228458	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
888	chr20	39792062	39792063	rs2228246	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	20q12	PLCG1	rs2228246-G	0.162703	3E-7		0.042	[0.026-0.058] unit increase	Illumina [1220000] (imputed)	N
888	chr20	39797464	39797465	rs753381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs753381-T	0.448063	3E-8		0.022397	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
888	chr20	39797464	39797465	rs753381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q12		rs753381-T	0.448063	3E-8		0.0223941	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
888	chr20	39797464	39797465	rs753381	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs753381-T	0.448063	2E-9		0.0249107	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
888	chr20	39797464	39797465	rs753381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	20q12		rs753381-C	0.847618	6E-9		0.0280412	[0.019-0.037] unit increase	Illumina [13476165] (imputed)	N
888	chr20	39797464	39797465	rs753381	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q12	PLCG1	rs753381-C		2E-7		0.01	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
888	chr20	39797464	39797465	rs753381	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	Low density lipoprotein cholesterol levels	29,902 European ancestry individuals		20q12		rs753381-T	0.45	7E-8		1.51	[0.96-2.06] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
888	chr20	39797464	39797465	rs753381	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q12	PLCG1	rs753381-T	0.450563	3E-9		0.01512	[0.01-0.02] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
888	chr20	39797464	39797465	rs753381	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	20q12	PLCG1	rs753381-C	0.5497	8E-9		0.02054587	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
888	chr20	39807768	39807769	rs2235363	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q12	ZHX3	rs2235363-?	NR	5E-10		0.017872233	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
888	chr20	39811274	39811275	rs4297946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	PLCG1, ZHX3, RP3-511B24.6	rs4297946-C	NR	7E-10		0.0175038	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
888	chr20	39811274	39811275	rs4297946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	PLCG1, ZHX3, RP3-511B24.6	rs4297946-C	NR	4E-10		0.0177679	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
888	chr20	39811274	39811275	rs4297946	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	20q12	TOP1	rs4297946-?	NR	8E-19		1.426	[1.09-1.76] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
888	chr20	39811274	39811275	rs4297946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	20q12	NR	rs4297946-?	NR	1E-7		1.961829	[1.24-2.69] unit increase	Illumina [32003504] (imputed)	N
888	chr20	39811274	39811275	rs4297946	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Low density lipoprotein cholesterol levels	9,720 African American individuals, 17,373 Hispanic/Latino individuals, 2,316 Asian ancestry individuals, 1,900 Native Hawaiian ancestry individuals, 591 Native American ancestry individuals, 321 individuals	NA	20q12	NR	rs4297946-?	NR	2E-6		1.566252	[0.92-2.21] unit increase	Illumina [31808917] (imputed)	N
888	chr20	39811274	39811275	rs4297946	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs4297946-G	NR	2E-10		0.027	unit decrease	Affymetrix [at least 7091467] (imputed)	N
888	chr20	39811274	39811275	rs4297946	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs4297946-G	0.543	7E-10	(EA)	0.029	unit decrease	Affymetrix [at least 7091467] (imputed)	N
888	chr20	39811274	39811275	rs4297946	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs4297946-G	NR	1E-11		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
888	chr20	39811274	39811275	rs4297946	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs4297946-G	0.543	3E-11	(EA)	0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
888	chr20	39811274	39811275	rs4297946	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q12	TOP1	rs4297946-C	0.47	3E-17		1.52	[1.15-1.89] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
888	chr20	39822331	39822332	rs6129767	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	20q12	ZHX3	rs6129767-T	0.7031	2E-8		0.0385	[0.025-0.052] unit decrease	NR [8041861] (imputed)	N
888	chr20	39826059	39826060	rs183042538	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to bupropion and depression	1,861 European ancestry non-responder cases, 192,070 European ancestry healthy controls	NA	20q12	ZHX3	rs183042538-?		8E-7		1.431	[1.249-1.638]	Illumina [~ 12000000] (imputed)	N
888	chr20	39826078	39826079	rs56668103	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	20q12	ZHX3	rs56668103-?	NR	4E-9		0.02571	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
888	chr20	39826078	39826079	rs56668103	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Low density lipoprotein cholesterol levels	72,866 Japanese ancestry individuals	NA	20q12	ZHX3	rs56668103-?	NR	7E-9		0.03384	[0.022-0.045] unit increase novel	Illumina [6108953] (imputed)	N
888	chr20	39830121	39830122	rs2235367	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	20q12	TOP1	rs2235367-A	0.543	5E-29	(Trans-ethnic initial)	0.0357	[0.029-0.043] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
888	chr20	39830121	39830122	rs2235367	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	20q12	TOP1	rs2235367-A	0.197	1E-6	(Asian initial, BMI unadjusted)	0.0494	[0.03-0.069] unit decrease	Affymetrix, Illumina [up to 1900000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q12		rs17265513-C	0.19	5E-16		8.11	z score increase	Affymetrix [9061022] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q12		rs17265513-C	0.19	3E-18		8.7	z score increase	Affymetrix [9061022] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q12		rs17265513-C	0.19	2E-12		7.04	z score increase	Affymetrix [9061022] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q12	NR	rs17265513-C	0.1995	2E-15				NR [9056863] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q12	NR	rs17265513-C	0.1995	5E-12				NR [9056863] (imputed)	N
888	chr20	39832627	39832628	rs17265513	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	20q12	ZHX3	rs17265513-T	0.7908	5E-14		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
888	chr20	39832627	39832628	rs17265513	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	20q12	ZHX3	rs17265513-C		1E-14		0.0082	[0.006-0.0104] unit increase	Affymetrix [13304133] (imputed)	N
888	chr20	39832627	39832628	rs17265513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q12	NR	rs17265513-C	NR	2E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	20q12	NR	rs17265513-C	NR	2E-22		0.0308	[0.025-0.037] unit increase	Affymetrix [9000000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q12	NR	rs17265513-C	NR	2E-16		0.0247	[0.019-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q12	NR	rs17265513-C	NR	3E-12		0.0211	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q12	TOP1, PLCG1, ZHX3, LPIN3	rs17265513-?		1E-9				NR [7428630] (imputed)	N
888	chr20	39832627	39832628	rs17265513	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q12	NR	rs17265513-C	0.1981	1E-8		0.0325	[0.021-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
888	chr20	39832627	39832628	rs17265513	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q12	NR	rs17265513-C	0.189	3E-9		0.0327	[0.022-0.043] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
888	chr20	39832627	39832628	rs17265513	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	20q12	ZHX3	rs17265513-T	0.801697	1E-9		0.9675509	NR	Affymetrix [~ 9600000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q12	ZHX3	rs17265513-T	0.80096	7E-45		0.0326309	[0.028-0.037] unit increase	NR [13737936] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs17265513-?	NR	8E-13				NR [~ 8900000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q12		rs17265513-?	NR	1E-49				NR [~ 8900000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q12		rs17265513-?	NR	7E-38				NR [~ 8900000] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q12	NR	rs17265513-C	0.199998	5E-59		0.0623745	[0.055-0.07] unit decrease	NR [19129689] (imputed)	N
888	chr20	39832627	39832628	rs17265513	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q12		rs17265513-?	NR	8E-45		0.0341749	[0.029-0.039] unit increase	Affymetrix [20259828] (imputed)	N
888	chr20	39832627	39832628	rs17265513	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	20q12	ZHX3	rs17265513-C	0.211	3E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
888	chr20	39832627	39832628	rs17265513	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	20q12	ZHX3	rs17265513-C	0.211	9E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [247470]	N
888	chr20	39832627	39832628	rs17265513	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	20q12	ZHX3	rs17265513-C	0.174	7E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
888	chr20	39832627	39832628	rs17265513	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20q12	CHD6, EMILIN3, LPIN3, PLCG1, TOP1, ZHX3	rs17265513-C	NR	2E-15		0.0613316	NR unit decrease	NR [NR] (imputed)	N
888	chr20	39832627	39832628	rs17265513	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	20q12	ZHX3, EMILIN3	rs17265513-C	0.19	1E-8		0.2398	[0.16-0.32] unit increase	Affymetrix [19941912] (imputed)	N
888	chr20	39832627	39832628	rs17265513	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood glucose adjusted for BMI	up to 33,231 non-diabetic individuals	NA	20q12	ZHX3	rs17265513-C	0.24	4E-7		0.022	[0.014-0.03] unit increase	Illumina [106489]	N
888	chr20	39835962	39835963	rs111934043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q12		rs111934043-C	NR	4E-8		0.0166	[0.011-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
888	chr20	39838055	39838056	rs6029568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	20q12		rs6029568-G	0.836486193	5E-12		0.08637068	[0.062-0.111] unit increase	Illumina [13429980] (imputed)	N
888	chr20	39845069	39845070	rs6129772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	20q12		rs6129772-T	0.733703	2E-8		0.0227844	[0.015-0.031] unit increase	Illumina [13476599] (imputed)	N
888	chr20	39845069	39845070	rs6129772	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	72,866 East Asian ancestry individuals	NA	20q12		rs6129772-T	0.735859	8E-9		0.0313155	[0.021-0.042] unit increase	Illumina [13461863] (imputed)	N
889	chr20	39858870	39858871	rs77625458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	ZHX3	rs77625458-G	NR	1E-10		0.0416772	[0.029-0.054] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39858870	39858871	rs77625458	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	ZHX3	rs77625458-G	NR	8E-11		0.0421286	[0.029-0.055] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39858870	39858871	rs77625458	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q12	NR	rs77625458-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
889	chr20	39870577	39870578	rs6129778	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q12	NR	rs6129778-A	0.189542	2E-15		0.0124835	[0.0094-0.0156] unit increase	Affymetrix [16585854] (imputed)	N
889	chr20	39870577	39870578	rs6129778	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q12	NR	rs6129778-A	0.189542	4E-12		0.0126378	[0.0091-0.0162] unit increase	Affymetrix [16585866] (imputed)	N
889	chr20	39870577	39870578	rs6129778	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	20q12	NR	rs6129778-C	0.810471	3E-9		0.0196229	[0.013-0.026] unit increase	Affymetrix [16585745] (imputed)	N
889	chr20	39872767	39872768	rs6102322	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q12	ZHX3	rs6102322-?	NR	5E-10		0.0334959	[0.023-0.044] unit increase	Illumina [4804024] (imputed)	N
889	chr20	39872767	39872768	rs6102322	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q12	TOP1, PLCG1, ZHX3	rs6102322-?		7E-10				Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39875862	39875863	rs144870397	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q12	NR	rs144870397-?	NR	1E-8				Illumina [7760689] (imputed)	N
889	chr20	39878955	39878956	rs6016534	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	20q12	TOP1	rs6016534-?	NR	2E-15		1.308	[0.98-1.64] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
889	chr20	39880955	39880956	rs6065325	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	20q12	NR	rs6065325-C	0.1678	8E-9		0.0164	[0.011-0.022] unit increase	Illumina [NR] (imputed)	N
889	chr20	39882405	39882406	rs6102324	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	20q12	NR	rs6102324-T	0.4672	4E-7		0.0103	[0.0064-0.0142] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
889	chr20	39887647	39887648	rs6129786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20q12		rs6129786-A	NR	3E-10		0.013	[0.0089-0.0171] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q12	ZHX3	rs2050058-A	NR	2E-15				Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q12	ZHX3	rs2050058-A	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q12	ZHX3	rs2050058-A	NR	9E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q12	ZHX3	rs2050058-A	NR	4E-46	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q12	ZHX3	rs2050058-A	NR	4E-46				Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q12	ZHX3	rs2050058-A	NR	1E-9		0.959	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39906987	39906988	rs2050058	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q12	ZHX3	rs2050058-A	NR	5E-9		2.301	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
889	chr20	39908688	39908689	rs6093462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	ZHX3	rs6093462-T	NR	3E-12		0.02134	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39908688	39908689	rs6093462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	ZHX3	rs6093462-T	NR	3E-12		0.0213225	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	4E-9		0.024356	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	2E-8		0.0225846	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	7E-9		0.0234594	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	2E-8		0.0227163	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	2E-10		0.0260654	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	5E-9		0.0240164	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	8E-12		0.028187	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	8E-10		0.0253955	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	20q12		rs2179372-C	0.449305	4E-9		0.0238504	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	20q12		rs2179372-C	0.449305	3E-8		0.0224268	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	2E-8		0.0229548	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	4E-10		0.025477	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	8E-10		0.0254045	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	2E-9		0.0246046	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	20q12		rs2179372-C	0.449256	4E-8		0.022498	[0.014-0.031] unit decrease	NR [11722792] (imputed)	N
889	chr20	39913631	39913632	rs2179372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	20q12	NR	rs2179372-G	0.549341	1E-10		0.012992	[0.009-0.0169] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
889	chr20	39924278	39924279	rs6102343	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q12	ZHX3	rs6102343-A	NR	5E-9		0.0202348	[0.013-0.027] unit decrease	Affymetrix [321788] (imputed)	N
889	chr20	39924278	39924279	rs6102343	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	20q12	ZHX3	rs6102343-A	0.24257	2E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
889	chr20	39924278	39924279	rs6102343	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	20q12	ZHX3	rs6102343-A	0.2467	1E-8		0.0372	[0.024-0.05] unit increase	Affymetrix [at least 7947838] (imputed)	N
889	chr20	39930207	39930208	rs6029619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q12	ZHX3	rs6029619-C	NR	2E-9		0.0303694	[0.02-0.04] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39930207	39930208	rs6029619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q12	ZHX3	rs6029619-C	NR	9E-10		0.0308876	[0.021-0.041] unit increase	Affymetrix [319769] (imputed)	N
889	chr20	39930207	39930208	rs6029619	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q12	ZHX3	rs6029619-C	NR	2E-8		0.029551	[0.019-0.04] unit decrease	Affymetrix [321788] (imputed)	N
889	chr20	39938121	39938122	rs4812492	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q12	ZHX3	rs4812492-C	NR	3E-6		1.0664392	NR	Affymetrix, Illumina [8278136] (imputed)	N
889	chr20	39938121	39938122	rs4812492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q12		rs4812492-?	NR	2E-13				NR [~ 8900000] (imputed)	N
889	chr20	39942515	39942516	rs142391093	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs142391093-A	0.755234	8E-10		0.0631492	[0.042-0.084] decrease	Affymetrix [11014269] (imputed)	N
889	chr20	39945770	39945771	rs62208470	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q12	ZHX3	rs62208470-G	NR	5E-6		1.1088	NR	Affymetrix, Illumina [8278136] (imputed)	N
889	chr20	39949953	39949954	rs6029626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029626-G	NR	2E-12		0.03	unit decrease	Affymetrix [at least 7091467] (imputed)	N
889	chr20	39949953	39949954	rs6029626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029626-G	0.557	5E-12	(EA)	0.033	unit decrease	Affymetrix [at least 7091467] (imputed)	N
889	chr20	39949953	39949954	rs6029626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029626-G	NR	4E-13		0.032	unit decrease	Affymetrix [at least 7091467] (imputed)	N
889	chr20	39949953	39949954	rs6029626	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q12	NR	rs6029626-G	0.557	6E-13	(EA)	0.035	unit decrease	Affymetrix [at least 7091467] (imputed)	N
889	chr20	39950804	39950805	rs2866611	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	20q12	NR	rs2866611-?	NR	6E-7				Affymetrix [NR]	N
889	chr20	39950804	39950805	rs2866611	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related disease endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	20q12	NR	rs2866611-?	NR	2E-8				Affymetrix [NR]	N
889	chr20	39957961	39957962	rs6065333	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	20q12	NR	rs6065333-C	0.15	9E-8		1.0438414	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
889	chr20	39962990	39962991	rs6016547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q12	RP3-450M14.1	rs6016547-C	0.165113	2E-11		0.02040682	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
889	chr20	39962990	39962991	rs6016547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q12	RP3-450M14.1	rs6016547-C	0.165122	1E-12		0.021637028	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
889	chr20	39968187	39968188	rs6072343	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q12	ERG	rs6072343-A	NR	3E-9		1.0815488	NR	Affymetrix, Illumina [8278136] (imputed)	N
889	chr20	39968187	39968188	rs6072343	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	20q12	ZHX3, LPIN3	rs6072343-A	0.15	7E-8		1.09	[1.06-1.13]	Illumina [161311]	N
889	chr20	39970384	39970385	rs6029640	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q12	NR	rs6029640-G	0.420056	1E-32		0.00985285	[0.0082-0.0115] unit increase	Affymetrix [16582909] (imputed)	N
889	chr20	39970384	39970385	rs6029640	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q12	NR	rs6029640-G	0.420056	1E-23		0.00928586	[0.0074-0.0112] unit increase	Affymetrix [16582965] (imputed)	N
889	chr20	39970384	39970385	rs6029640	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q12	LPIN3	rs6029640-A	0.5683	3E-7		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
889	chr20	39970384	39970385	rs6029640	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q12	LPIN3	rs6029640-A	0.5823	4E-6		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
889	chr20	39970433	39970434	rs6072345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q12		rs6072345-?	NR	9E-10				NR [~ 8900000] (imputed)	N
889	chr20	39970433	39970434	rs6072345	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	20q12	NR	rs6072345-A	0.14	3E-8		0.0198	[0.013-0.027] unit increase	Illumina [NR] (imputed)	N
890	chr20	39980960	39980961	rs79682866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q12		rs79682866-C	0.467653	1E-10		0.0129746	[0.009-0.0169] unit decrease	Illumina [13479295] (imputed)	N
890	chr20	39990376	39990377	rs61739314	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMILIN3	5,367 Icelandic ancestry individuals	NA	20q12		rs61739314-C	0.03801	3E-69		0.832268	[0.74-0.92] unit decrease	Illumina [7506463] (imputed)	N
890	chr20	39990376	39990377	rs61739314	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q12	EMILIN3	rs61739314-G	0.96171875	4E-43	(EMILIN3, 8773_172_3)	0.85507756	[0.74-0.98] unit increase	Illumina [> 1000000] (imputed)	N
890	chr20	39990376	39990377	rs61739314	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q12	EMILIN3	rs61739314-C	0.033	4E-23	(EMILIN-3, EMILIN3.8773.172.3)	0.69	[0.55-0.83] unit decrease	Affymetrix [10572788] (imputed)	N
890	chr20	39990699	39990700	rs41278104	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	20q12	NR	rs41278104-?	NR	1E-7				NR [NR] (imputed)	N
890	chr20	39997403	39997404	rs143186028	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	20q12	NR	rs143186028-T	0.1778	7E-18		1.025	[1.019-1.03]	NR [8098588] (imputed)	N
890	chr20	40008552	40008553	rs6072355	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	20q12	RP4-620E11.5	rs6072355-C	0.2733	6E-6		0.0285	[0.016-0.041] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr20	40016836	40016837	rs4812501	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q12	NR	rs4812501-G	0.445404	3E-10				Affymetrix, Illumina [24588908] (imputed)	N
890	chr20	40021750	40021751	rs4810316	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EMILIN3	5,367 Icelandic ancestry individuals	NA	20q12		rs4810316-A	0.325	2E-23		0.194753	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
890	chr20	40021750	40021751	rs4810316	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q12	NR	rs4810316-A	0.327604	3E-12		0.01366	[0.0098-0.0175] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
890	chr20	40021750	40021751	rs4810316	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q12	NR	rs4810316-A	0.328	2E-15	(EMILIN-3, EMILIN3.8773.172.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
890	chr20	40033118	40033119	rs80216136	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs80216136-?	NR	9E-10				NR [~ 8900000] (imputed)	N
890	chr20	40049578	40049579	rs55864139	26098866	Helgason H	2015-06-22	Nat Genet	Loss-of-function variants in ATM confer risk of gastric cancer.	Gastric adenocarcinoma (histologically verified)	2,043 European ancestry cases, 202,533 European ancestry controls	NA	20q12	CHD6	rs55864139-A	0.0029	7E-6		3.12	[1.9-5.11]	Illumina [~ 25000000] (imputed)	N
890	chr20	40064558	40064559	rs13037749	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	20q12	CHD6	rs13037749-A	0.92	8E-6	(White matter hyperintensities)			Illumina [2131250] (imputed)	N
890	chr20	40066116	40066117	rs2179452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	20q12	TOP1	rs2179452-T	0.8003	2E-8		0.4605	[0.3-0.62] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
890	chr20	40066116	40066117	rs2179452	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	20q12	TOP1	rs2179452-T	0.8231	5E-8		0.4758	[0.3-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
890	chr20	40078084	40078085	rs4142393	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q12	CHD6	rs4142393-T	0.543	9E-9		0.0172	[0.011-0.023] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
890	chr20	40091366	40091367	rs117629411	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q12	NR	rs117629411-?	NR	4E-6		0.007845	[0.0045-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
890	chr20	40094363	40094364	rs6029691	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		20q12	CHD6	rs6029691-C	0.688	3E-7		0.016	[0.01-0.022] dioptres decrease	NR [5900115] (imputed)	N
890	chr20	40101540	40101541	rs1010305	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q12	CHD6	rs1010305-A	0.4561	1E-8		0.0168	[0.011-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
890	chr20	40101646	40101647	rs1010304	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	20q12	CHD6, EMILIN3	rs1010304-A	0.94	7E-6	(WL-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
890	chr20	40107313	40107314	rs6129846	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	20q12	CHD6, EMILIN3	rs6129846-C	0.94	7E-6	(WL-dr)			Affymetrix, Illumina [NR] (imputed)	N
891	chr20	40140063	40140064	rs10854223	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	20q12		rs10854223-T	0.67	5E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
891	chr20	40140063	40140064	rs10854223	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	20q12		rs10854223-T	0.67	1E-6		0.08	unit increase	Illumina [2398641] (imputed)	N
891	chr20	40164447	40164448	rs144356348	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q12	CHD6	rs144356348-A	0.0189579009741967	2E-6	(G_unclassified_F_Coriobacteriaceae_RNT)	0.534512	[0.32-0.75] unit decrease	Illumina [7711310] (imputed)	N
891	chr20	40168383	40168384	rs6072411	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	20q12	CHD6	rs6072411-G	0.19	8E-6		0.22	unit increase	Illumina [5600000] (imputed)	N
891	chr20	40179908	40179909	rs6129863	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q12	CHD6	rs6129863-A	0.2223	3E-12		0.0159	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
891	chr20	40197812	40197813	rs79122751	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q12	NR	rs79122751-?	NR	7E-6		0.0078518	[0.0044-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
891	chr20	40234916	40234917	rs2866745	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20q12	CHD6	rs2866745-?	NR	1E-21		0.0247	[0.02-0.029] unit increase	Affymetrix [5701386] (imputed)	N
892	chr20	40251828	40251829	rs6129880	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q12	CHD6, PTPRT	rs6129880-T		2E-8		0.264	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr20	40251828	40251829	rs6129880	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q12	CHD6, PTPRT	rs6129880-T		2E-9		0.174	unit increase	Affymetrix [at least 2696785] (imputed)	N
892	chr20	40258708	40258709	rs4812536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q12		rs4812536-?	NR	7E-11				NR [~ 8900000] (imputed)	N
892	chr20	40309229	40309230	rs17210039	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	20q12		rs17210039-G	0.19	2E-6		0.62	unit increase	Affymetrix [NR] (imputed)	N
892	chr20	40353814	40353815	rs6129919	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	PTPRT	rs6129919-?	NR	4E-6	(tauro deoxycholate)	0.3019456	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
893	chr20	40388554	40388555	rs34454687	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	20q12	NR	rs34454687-?	NR	3E-6		0.1893	[0.11-0.27] unit increase	Illumina [at least 560000] (imputed)	N
893	chr20	40409162	40409163	rs6029818	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Waist circumference	4,659 Korean ancestry females	5,273 Korean ancestry females	20q12	CHD6	rs6029818-A	0.238175	8E-6		0.6315	[0.35-0.91] unit increase	Affymetrix [NR] (imputed)	N
893	chr20	40493071	40493072	rs10485681	26025128	Park HW	2015-05-27	J Allergy Clin Immunol	Genetic risk factors for decreased bone mineral accretion in children with asthma receiving multiple oral corticosteroid bursts.	Bone mineral accretion in asthma (oral corticosteroid dose interaction)	489 European ancestry children	NA	20q12	intergenic	rs10485681-?		1E-7				Illumina [NR]	N
893	chr20	40500665	40500666	rs112961612	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Cognitive impairment	355 European ancestry cases, 6,190 European ancestry controls	NA	20q12		rs112961612-T	0.08	8E-8		1.78	[1.29-2.84]	Illumina [19468843] (imputed)	N
894	chr20	40525099	40525100	rs117815558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q12		rs117815558-?	NR	2E-8				NR [~ 8900000] (imputed)	N
894	chr20	40545783	40545784	rs987783	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs987783-?	NR	3E-7	(hydroxyproline)	0.20793463	[0.13-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
894	chr20	40582835	40582836	rs12625909	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	20q12		rs12625909-T	NR	7E-6		2.3906	[1.37-3.41] unit increase	Illumina [NR] (imputed)	N
895	chr20	40643725	40643726	rs78716465	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	20q12	NR	rs78716465-G		2E-6		0.3265	[0.19-0.46] SD units decrease	NR [10700000] (imputed)	N
895	chr20	40691826	40691827	rs2144008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs2144008-?	NR	9E-6	(TAG 56:6)	0.32015005	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr20	40691826	40691827	rs2144008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs2144008-?	NR	6E-6	(TAG 54:8)	0.32905868	[0.19-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr20	40691826	40691827	rs2144008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs2144008-?	NR	5E-7	(TAG 56:7)	0.3649242	[0.22-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr20	40691826	40691827	rs2144008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs2144008-?	NR	3E-7	(TAG 58:9)	0.37415937	[0.23-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr20	40691826	40691827	rs2144008	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q12	CHD6	rs2144008-?	NR	1E-6	(TAG 58:8)	0.35278907	[0.21-0.5] unit increase	Affymetrix [at least 2500000] (imputed)	N
895	chr20	40719873	40719874	rs2866947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q12	Intergenic	rs2866947-G	0.3653	4E-9		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
895	chr20	40721799	40721800	rs3092252	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q12	PTPRT	rs3092252-A	0.4049	2E-6		0.0329	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr20	40726826	40726827	rs1883375	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	20q12	PTPRT	rs1883375-T	0.5881	2E-6		0.0431	[0.025-0.061] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
895	chr20	40762867	40762868	rs6124419	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of mild malaria attacks	525 Beninese individuals	250 Beninese individuals	20q12	PTPRT	rs6124419-A	0.12	7E-7		1.53	[1.28-1.83]	Illumina [15566900] (imputed)	N
895	chr20	40762867	40762868	rs6124419	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of malaria infection (mild or asymptomatic)	525 Beninese individuals	250 Beninese individuals	20q12	PTPRT	rs6124419-A	0.12	4E-7		1.58	[1.31-1.91]	Illumina [15566900] (imputed)	N
896	chr20	40783391	40783392	rs6030011	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	20q12	NR	rs6030011-?		9E-6				Illumina [892589]	N
896	chr20	40840778	40840779	rs7345986	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	20q12	PTPRT	rs7345986-A	0.74	9E-6	(Age 20-60 years)	0.0637	[0.036-0.092] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
896	chr20	40884675	40884676	rs727336	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	20q12	NR	rs727336-?		2E-6	(CEACAM1)	0.2345	[NR] unit increase	Illumina [NR]	N
897	chr20	40918116	40918117	rs2867028	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	20q12	NR	rs2867028-T	0.1582	4E-6		0.1899	[0.11-0.27] unit decrease	Illumina [10677593] (imputed)	N
897	chr20	40949830	40949831	rs4635580	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	20q12	PTPRT, LOC643172, PPIAL	rs4635580-A	0.031	2E-6		3.8	[2.11-6.84]	Illumina [1556551]	N
897	chr20	40950182	40950183	rs6016745	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	20q12	PTPRT	rs6016745-A	0.19	6E-6	(Left eye angle of en-ps-ex)	0.803	[NR] unit decrease	Affymetrix [311944]	N
897	chr20	40959132	40959133	rs6030141	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q12	PTPRT	rs6030141-G	0.0779766822602756	5E-6	(G_Holdemanella_HB)	0.410031	[0.23-0.59] unit increase	Illumina [7711310] (imputed)	N
897	chr20	40994093	40994094	rs6030171	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q12	NR	rs6030171-C	0.359936573653761	3E-6	(IGP7)	0.148	[0.086-0.21] unit decrease	Illumina [~ 2500000] (imputed)	N
897	chr20	41015888	41015889	rs2425479	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x Mediterranean diet adherence interaction in metabolic syndrome	257 European ancestry individuals with low adherence to Mediterranean diet, 161 European ancestry individuals with high adherence to Mediterranean diet	NA	20q12	PTPRT	rs2425479-T	0.035	3E-6	(women)			Illumina [622468]	N
898	chr20	41058121	41058122	rs6513791	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	20q12	PTPRT	rs6513791-T	0.18	4E-6		0.12	[0.069-0.171] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
898	chr20	41061082	41061083	rs7267810	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	20q12	Intergenic	rs7267810-?		7E-6		123.9402	[NR] unit increase	Illumina [575353]	N
898	chr20	41065515	41065516	rs6030238	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	20q12	Intergenic	rs6030238-?		8E-6		152.1251	[NR] unit decrease	Illumina [575353]	N
898	chr20	41069459	41069460	rs2179218	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid AB1-42 levels	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	20q12	Intergenic	rs2179218-?		8E-6		178.0276	[NR] unit decrease	Illumina [575353]	N
898	chr20	41070531	41070532	rs760703	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q12	NR	rs760703-?	NR	3E-6		4.689	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
898	chr20	41070558	41070559	rs6030245	31116379	Meier SM	2019-05-22	JAMA Psychiatry	Genetic Variants Associated With Anxiety and Stress-Related Disorders: A Genome-Wide Association Study and Mouse-Model Study.	Anxiety and stress-related disorders	12,655 European ancestry cases, 19,225 European ancestry controls	NA	20q12	PTPRT	rs6030245-T	NR	5E-7		1.12	[1.072-1.170]	Illumina [8933939] (imputed)	N
898	chr20	41072654	41072655	rs3890324	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	20q12	PTPRT	rs3890324-C	NR	2E-6	(Fixed effect)	0.06	[0.04-0.08] unit decrease	Illumina [4736131] (imputed)	N
898	chr20	41096781	41096782	rs6030266	34270794	Watts K	2021-07-16	Int J Cancer	Genome-wide association studies of toxicity to oxaliplatin and fluoropyrimidine chemotherapy with or without cetuximab in 1800 patients with advanced colorectal cancer.	Adverse response to chemotherapy in colorectal cancer (XELOX,Cetuximab) (Diarrhoea)	348 European ancestry individuals	NA	20q12	NR	rs6030266-?		6E-7		0.4	[0.3-0.6]	NR [4178858] (imputed)	N
899	chr20	41202957	41202958	rs6102913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20q12		rs6102913-?	NR	3E-8				NR [~ 8900000] (imputed)	N
899	chr20	41202957	41202958	rs6102913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q12		rs6102913-T	0.4845	1E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
899	chr20	41211912	41211913	rs17747544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q12		rs17747544-A	0.4701	2E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
899	chr20	41217456	41217457	rs2038210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q12	Intergenic	rs2038210-A	0.2596	4E-11	(MTAG)	0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr20	41217456	41217457	rs2038210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q12	Intergenic	rs2038210-A	0.2594	1E-14	(MTAG)	0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr20	41217456	41217457	rs2038210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q12	Intergenic	rs2038210-G	0.7406	1E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
899	chr20	41217456	41217457	rs2038210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q12	Intergenic	rs2038210-A	0.265	1E-12	(MTAG)	0.0105	[0.0076-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr20	41217456	41217457	rs2038210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q12	Intergenic	rs2038210-A	0.2723	3E-12	(MTAG)	0.018	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr20	41223061	41223062	rs1883842	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	20q12	PTPRT	rs1883842-T	0.72	9E-9		0.031	unit decrease	NR [2324712] (imputed)	N
899	chr20	41231467	41231468	rs7272983	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	20q12	PTPRT	rs7272983-C	0.1609	6E-9		0.016028207	[0.011-0.021] unit decrease	Affymetrix [up to 18485882] (imputed)	N
899	chr20	41234577	41234578	rs7263077	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	20q12	PTPRT	rs7263077-G	0.17	6E-6		0.09	[0.051-0.129] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
899	chr20	41250531	41250531	rs138276104	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	20q12	NR	rs138276104-AGGCTGAGTGATG	0.86	5E-7		1.27	[NR]	Affymetrix [87696888] (imputed)	N
900	chr20	41291721	41291722	rs140013767	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	20q12		rs140013767-G	0.02802	3E-6		3.24	[1.983-5.29299999999999]	Affymetrix [7975321] (imputed)	N
900	chr20	41330714	41330715	rs79886049	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	20q12		rs79886049-A	NR	2E-6	(GLM)	2.8136	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
900	chr20	41344188	41344189	rs58014646	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference	298 individuals	NA	20q12	NR	rs58014646-?	NR	3E-8			[NR]	NR [1665663]	N
900	chr20	41409900	41409901	rs13042473	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	20q12	PTPRT	rs13042473-G	0.19	8E-6		0.069	[0.038-0.1] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
900	chr20	41409900	41409901	rs13042473	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	20q12	PTPRT	rs13042473-G	0.18	2E-6	(EA)	0.09	[0.053-0.127] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
902	chr20	41666867	41666868	rs2208049	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	20q12	PTPRT	rs2208049-T	0.2121	2E-6		1.535	[1.285-1.834]	Affymetrix, Illumina [14074516] (imputed)	N
903	chr20	41709653	41709654	rs117355564	30946739	Hu B	2019-04-04	PLoS Genet	Genome-wide association study reveals sex-specific genetic architecture of facial attractiveness.	Facial attractiveness (male raters)	3,928 European ancestry individuals	NA	20q12	PTPRT	rs117355564-G	0.016	6E-7		0.612	[0.37-0.85] unit decrease	Illumina [7251583] (imputed)	N
903	chr20	41711191	41711192	rs6072971	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	20q12	NR	rs6072971-T	0.465209	3E-8		0.038895495	[0.025-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
903	chr20	41716652	41716653	rs1006749	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q12		rs1006749-A	0.5237	2E-8		0.0079	[0.0052-0.0106] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
903	chr20	41754600	41754601	rs11086862	29082582	Almli LM	2017-10-30	Addict Biol	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.	Problematic alcohol use in trauma-exposed individuals	1,036 African American individuals	828 European ancestry individuals, 108 African ancestry individuals, 282 Hispanic and Native American individuals, 170 other ancestry individuals, 6 Asian individuals	20q13.11	PTPRT	rs11086862-C	0.44	5E-6	(AA, initial)	2.0	[1.14-2.86] unit increase	Illumina [501278]	N
903	chr20	41755873	41755874	rs148756956	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	BMI x SSRI levels interaction in schizophrenia or bipolar disorder	1,180 European ancestry individuals	NA	20q13.11	PTPRT	rs148756956-C	0.02	2E-8		32.04	[20.99-43.09] unit increase	Illumina [NR] (imputed)	N
904	chr20	41850476	41850477	rs75945142	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Hyperthymic temperament	775 European ancestry individuals	NA	20q13.11		rs75945142-A	NR	3E-6		0.0455	unit decrease	Illumina [2550710] (imputed)	N
904	chr20	41885121	41885122	rs6130328	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	20q13.11	NR	rs6130328-A	NR	2E-9		0.01467	[0.0099-0.0195] unit decrease	Affymetrix [10847151] (imputed)	N
904	chr20	41885121	41885122	rs6130328	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	20q13.11	NR	rs6130328-A	0.383099	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
904	chr20	41929685	41929686	rs34373763	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20q13.11		rs34373763-C	0.914	6E-9		0.013	[0.0091-0.0169] unit increase	NR [NR] (imputed)	N
904	chr20	41934619	41934620	rs6017006	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	20q13.11	intergenic	rs6017006-A	0.04	2E-8		5.0	[2.8-9.0]	Illumina [4873589] (imputed)	N
905	chr20	41954382	41954383	rs4369924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.11		rs4369924-A	0.1615	6E-11		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
905	chr20	41956008	41956009	rs6030789	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.11	NR	rs6030789-?	NR	6E-6		4.522	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
905	chr20	41972027	41972028	rs2867690	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q13.11	NR	rs2867690-T	0.1819	4E-8		1.043	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
905	chr20	41975394	41975395	rs4812697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.11		rs4812697-T	0.9248	2E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
905	chr20	41975394	41975395	rs4812697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.11	Intergenic	rs4812697-T	0.9248	9E-15	(MTAG)	0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr20	41986506	41986507	rs6030803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.11		rs6030803-C	NR	9E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
905	chr20	41986506	41986507	rs6030803	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.11	SRSF6	rs6030803-T	0.873489	5E-10		0.0129265	[0.0089-0.017] unit increase	Affymetrix [12370749]	N
905	chr20	41990760	41990761	rs6103254	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.11		rs6103254-?	NR	6E-12				NR [~ 8900000] (imputed)	N
905	chr20	41991600	41991601	rs2010809	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	20q13.11	NR	rs2010809-C	0.9883	2E-6		14.0668	[NR] unit decrease	Illumina [1200000] (imputed)	N
905	chr20	42010995	42010996	rs6130360	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.11	NA	rs6130360-A	0.8485	1E-9		0.0151	[0.01-0.02] unit increase	NR [~ 27400000] (imputed)	N
905	chr20	42010995	42010996	rs6130360	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.11	NA	rs6130360-A	0.8492	7E-12		0.0162	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
905	chr20	42011434	42011435	rs6030816	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.11	NR	rs6030816-G	0.828	4E-10		0.00891871	[0.0061-0.0117] unit decrease	NR [9732723] (imputed)	N
905	chr20	42012416	42012417	rs6073074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q13.11	Intergenic	rs6073074-A	0.1738	2E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
905	chr20	42015634	42015635	rs6103270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q13.11		rs6103270-G	NR	2E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
905	chr20	42015800	42015801	rs6073075	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q13.11	NR	rs6073075-A	0.824	2E-8		0.018704044	[0.012-0.025] unit decrease	NR [~ 10000000] (imputed)	N
905	chr20	42015847	42015848	rs6103271	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	20q13.11	intergenic	rs6103271-?	NR	6E-9		0.00883345	[0.0059-0.0118] unit increase	Affymetrix [NR] (imputed)	N
905	chr20	42015847	42015848	rs6103271	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	20q13.11	NR	rs6103271-A	0.172843	7E-9		5.79	z score increase	NR [10847151] (imputed)	N
905	chr20	42016040	42016041	rs6030819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.11	Intergenic	rs6030819-A	0.192	1E-17	(MTAG)	0.0195	[0.015-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
905	chr20	42016040	42016041	rs6030819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.11	Intergenic	rs6030819-A	0.192	7E-14		0.0185	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
905	chr20	42016040	42016041	rs6030819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.11	Intergenic	rs6030819-A	0.1915	5E-20	(MTAG)	0.0192	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
905	chr20	42016040	42016041	rs6030819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.11	Intergenic	rs6030819-A	0.1935	2E-11	(MTAG)	0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
905	chr20	42019679	42019680	rs6103272	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	20q13.11	PTPRT, SRSF6	rs6103272-?		8E-6	(EA)	0.11249223	[0.063-0.162] unit decrease	Illumina [13620258] (imputed)	N
906	chr20	42084047	42084048	rs35198725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.11	NR	rs35198725-C	0.665066	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
906	chr20	42084047	42084048	rs35198725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.11	NR	rs35198725-C	0.657933	6E-13		0.014738	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
906	chr20	42084047	42084048	rs35198725	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	20q13.11	NR	rs35198725-?	NR	2E-6				Illumina [8270200] (imputed)	N
906	chr20	42094473	42094474	rs2064279	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	20q13.11	SRSF6, L3MBTL1, EIF4EBP2P, SGK2	rs2064279-T	NR	5E-6	(daytime napping duration)	0.0767	[0.044-0.109] unit decrease	Affymetrix [7141204] (imputed)	N
906	chr20	42104938	42104939	rs4812712	25758998	Rubicz R	2015-03-11	Eur J Hum Genet	Genome-wide genetic investigation of serological measures of common infections.	Antibody level in response to infection	1,932 Mexican American individuals	NA	20q13.11	SRSF6, L3MBTL1	rs4812712-A	0.403	5E-8	(C. pneumoniae)	0.18	[NR] unit increase	Illumina [944565]	N
906	chr20	42160156	42160157	rs6103366	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.12	NR	rs6103366-?	NR	5E-6		4.55	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
906	chr20	42185535	42185536	rs743998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs743998-C	0.831913	8E-14				Affymetrix, Illumina [23467995] (imputed)	N
906	chr20	42185535	42185536	rs743998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q13.12	NR	rs743998-C	0.841592	8E-13		0.018762	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
906	chr20	42202076	42202077	rs3787271	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.12		rs3787271-?	NR	2E-9				NR [~ 8900000] (imputed)	N
906	chr20	42203236	42203237	rs916410	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	20q13.12	SGK2	rs916410-T	0.3211	7E-7	(East Asian)	0.7	[0.43-0.97] unit increase	Illumina [up to 13042663] (imputed)	N
907	chr20	42230694	42230695	rs6073143	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.12	NR	rs6073143-C	0.7327	4E-12		0.0304	[0.022-0.039] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
907	chr20	42251441	42251442	rs6030992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.12	IFT52	rs6030992-G	0.145008	7E-11		0.02206275	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42291847	42291848	rs34178687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.12	MYBL2	rs34178687-C	0.059248	5E-12		0.0367323	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42291847	42291848	rs34178687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.12	MYBL2	rs34178687-C	0.059261	2E-11		0.03240033	[0.023-0.042] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42291847	42291848	rs34178687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.12		rs34178687-?	NR	7E-17				NR [~ 8900000] (imputed)	N
907	chr20	42306291	42306292	rs826952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.12	MYBL2	rs826952-C	0.883216	2E-11		0.023211068	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42306291	42306292	rs826952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.12	MYBL2	rs826952-C	0.883214	1E-10		0.022172682	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42308491	42308493	rs3091848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.12		rs3091848-C	NR	8E-16		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
907	chr20	42310810	42310811	rs419842	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.12	NR	rs419842-T	0.8208	7E-11		0.0408	[0.028-0.053] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
907	chr20	42312618	42312619	rs3092364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs3092364-G	0.127846	1E-13				Affymetrix, Illumina [22063850] (imputed)	N
907	chr20	42314066	42314067	rs6031036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q13.12	MYBL2	rs6031036-C	0.87695	2E-13		0.024803191	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr20	42314066	42314067	rs6031036	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q13.12	NR	rs6031036-T	0.123402	4E-16		0.02336	[0.018-0.029] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
907	chr20	42314066	42314067	rs6031036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.12		rs6031036-?	NR	6E-13				NR [~ 8900000] (imputed)	N
907	chr20	42315090	42315091	rs285186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs285186-?	NR	2E-17				NR [~ 8900000] (imputed)	N
907	chr20	42320191	42320191	rs3092517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.12	MYBL2	rs3092517-AT	0.877567	5E-9		0.021060053	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
907	chr20	42331456	42331457	rs2070235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.12	MYBL2	rs2070235-G	0.076985	2E-13		0.030782089	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
908	chr20	42337874	42337875	rs285171	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	20q13.12	MYBL2	rs285171-C	0.1646	9E-6		0.0117	[0.0066-0.0168] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
908	chr20	42389024	42389025	rs151198248	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	70,505 European ancestry cases, 17,500 European ancestry controls	NA	20q13.12	LOC101927200	rs151198248-T	NR	6E-6		1.335	[1.210-1.460]	NR [5919636] (imputed)	N
908	chr20	42440137	42440138	rs1974107	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	20q13.12	NR	rs1974107-T	0.2722	4E-6		0.1576	[0.091-0.224] unit decrease	Illumina [10677593] (imputed)	N
909	chr20	42487203	42487204	rs6103489	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	20q13.12	intergenic	rs6103489-?	NR	4E-6	(SF7)			Affymetrix [5476100] (imputed)	N
909	chr20	42489756	42489757	rs8121964	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q13.12	TOX2	rs8121964-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
909	chr20	42532820	42532821	rs6065668	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20q13.12	TOX2	rs6065668-T	0.4	4E-7		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 10700000] (imputed)	N
909	chr20	42532820	42532821	rs6065668	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	20q13.12	NR	rs6065668-T	NR	4E-11		1.1148272	[1.08-1.15]	Illumina [6774630] (imputed)	N
909	chr20	42561421	42561422	rs6073257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	20q13.12		rs6073257-T	NR	7E-9		0.0133	[0.0088-0.0178] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
909	chr20	42573821	42573822	rs6031252	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	20q13.12	TOX2	rs6031252-A	0.142	6E-6		0.11	[NR] unit decrease	Illumina [948658]	N
909	chr20	42579050	42579051	rs4812772	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.12	TOX2	rs4812772-C	NR	6E-9		1.0743	NR	Affymetrix, Illumina [8278136] (imputed)	N
910	chr20	42620591	42620592	rs6017235	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	20q13.12	TOX2	rs6017235-A	0.474	6E-7	(AA)	0.03	NR unit decrease	Illumina [NR] (imputed)	N
910	chr20	42632981	42632982	rs6031288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.12		rs6031288-?	NR	2E-8				NR [~ 8900000] (imputed)	N
910	chr20	42640612	42640613	rs6031294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.12		rs6031294-C	NR	9E-15		0.0174	[0.013-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
910	chr20	42648616	42648617	rs6031298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.12		rs6031298-A	NR	3E-14		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
910	chr20	42657273	42657277	rs11471274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.12	TOX2	rs11471274-T	0.722992	5E-17		0.0235048	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
910	chr20	42657324	42657325	rs6031303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20q13.12		rs6031303-G	NR	4E-16		0.0151	[0.012-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
910	chr20	42657324	42657325	rs6031303	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs6031303-A	0.28	4E-17		0.0723	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
910	chr20	42657840	42657841	rs6017247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q13.12	TOX2	rs6017247-C	0.728798	4E-15		0.019630045	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr20	42657840	42657841	rs6017247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q13.12	TOX2	rs6017247-C	0.728815	4E-22		0.024158875	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr20	42657840	42657841	rs6017247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.12		rs6017247-?	NR	4E-22				NR [~ 8900000] (imputed)	N
910	chr20	42657861	42657862	rs6103572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q13.12	NR	rs6103572-C	0.729098	6E-27		0.024061	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
910	chr20	42658082	42658083	rs6031305	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	20q13.12		rs6031305-A	0.271	2E-9				Affymetrix [10369434] (imputed)	N
910	chr20	42658585	42658586	rs6073289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.12	TOX2	rs6073289-G	0.705408	2E-14		0.018496074	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr20	42658585	42658586	rs6073289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.12	TOX2	rs6073289-G	0.705396	5E-18		0.020978427	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
910	chr20	42658585	42658586	rs6073289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.12	NR	rs6073289-G	0.705695	7E-27		0.021443	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
910	chr20	42658585	42658586	rs6073289	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.12	NR	rs6073289-G	0.705356	1E-26		0.022601	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
910	chr20	42658612	42658613	rs6103575	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6103575-G	0.707667	1E-25				Affymetrix, Illumina [20825802] (imputed)	N
910	chr20	42659887	42659888	rs6031307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.12		rs6031307-?	NR	1E-16				NR [~ 8900000] (imputed)	N
910	chr20	42660285	42660286	rs2179593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q13.12	TOX2	rs2179593-A	0.715174	1E-10		0.015776101	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr20	42660285	42660286	rs2179593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.12	TOX2	rs2179593-A	0.715146	8E-9		0.014211592	[0.0094-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
910	chr20	42660285	42660286	rs2179593	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.12	NR	rs2179593-A	0.72	5E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
910	chr20	42660285	42660286	rs2179593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.12		rs2179593-?	NR	3E-8				NR [~ 8900000] (imputed)	N
910	chr20	42660285	42660286	rs2179593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.12		rs2179593-?	NR	1E-20				NR [~ 8900000] (imputed)	N
910	chr20	42660435	42660436	rs6017249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6017249-T	0.737235	1E-27				Affymetrix, Illumina [24246363] (imputed)	N
910	chr20	42660435	42660436	rs6017249	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6017249-T	0.735069	5E-26				Affymetrix, Illumina [19872809] (imputed)	N
910	chr20	42663665	42663666	rs6073293	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.12	TOX2	rs6073293-T	0.688169	8E-10		0.014911919	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
910	chr20	42666474	42666475	rs6031311	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.12	NR	rs6031311-T	0.7639	7E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
910	chr20	42671432	42671433	rs6093921	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	20q13.12		rs6093921-?	NR	5E-6		3.296943		Affymetrix [710007]	N
910	chr20	42673847	42673848	rs766622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20q13.12	TOX2	rs766622-T	0.7019	4E-9		0.02290971	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
910	chr20	42692372	42692373	rs6073305	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.12	NR	rs6073305-T	0.273	4E-6	(IFNalpha_STAT4_of_CD20p)			Illumina [5084123] (imputed)	N
910	chr20	42714396	42714397	rs12479734	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q13.12	NR	rs12479734-G	0.0945192	1E-8		0.0679377	[0.045-0.091] unit increase	Affymetrix [17914406] (imputed)	N
911	chr20	42737493	42737494	rs6073330	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	20q13.12	JPH2, TOX2	rs6073330-A	0.481	3E-7				Affymetrix [432921]	N
911	chr20	42742257	42742258	rs116834259	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection (persistent)	51 Nigerian ancestry cases, 355 Nigerian ancestry controls	NA	20q13.12	JPH2	rs116834259-?	NR	3E-7		4.42	2.50-7.81	Illumina [~ 18000000] (imputed)	N
911	chr20	42754239	42754240	rs7268343	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.12	JPH2	rs7268343-A	0.1223	1E-9		0.0176	[0.012-0.023] unit increase	Affymetrix [18391927] (imputed)	N
911	chr20	42794269	42794270	rs6073354	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20q13.12	JPH2	rs6073354-C	0.499418	4E-9		0.047011588	[0.031-0.063] unit decrease	Affymetrix [7288503] (imputed)	N
911	chr20	42795047	42795048	rs62204504	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	20q13.12	JPH2, C20orf111, LOC100505783	rs62204504-C	0.0355	6E-6		3.22	[2.71-3.73]	Illumina [8809853] (imputed)	N
911	chr20	42795151	42795152	rs6031431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	20q13.12		rs6031431-G	0.320507	2E-8		0.0203829	[0.013-0.027] unit increase	Illumina [13477770] (imputed)	N
911	chr20	42795151	42795152	rs6031431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20q13.12		rs6031431-G	NR	1E-8		0.0373	[0.024-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
911	chr20	42795151	42795152	rs6031431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20q13.12		rs6031431-G	NR	6E-14		0.0452	[0.033-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
911	chr20	42795151	42795152	rs6031431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20q13.12		rs6031431-G	NR	1E-10		0.0327	[0.023-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
911	chr20	42795151	42795152	rs6031431	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	20q13.12		rs6031431-G	0.320503	5E-8		0.0202719	[0.013-0.028] unit increase	Illumina [13477767] (imputed)	N
911	chr20	42795151	42795152	rs6031431	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	20q13.12	NR	rs6031431-A	0.4537	7E-7		0.5682	[0.34-0.79] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
911	chr20	42795151	42795152	rs6031431	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	20q13.12	NR	rs6031431-A	0.4891	8E-7		0.9688	[0.58-1.35] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
911	chr20	42795151	42795152	rs6031431	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20q13.12	JPH2	rs6031431-G	0.460604	8E-10		0.0502499	[0.034-0.066] unit increase	Affymetrix [7288503] (imputed)	N
911	chr20	42795151	42795152	rs6031431	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.12	JPH2	rs6031431-G	0.461195	5E-10		0.038108084	[0.026-0.05] unit increase	Affymetrix [7288503] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.12		rs6031431-?	NR	1E-10				NR [~ 8900000] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q13.12	JPH2	rs6031431-G	0.5418	6E-17		0.2792	[0.21-0.34] mmHg decrease	Affymetrix [NR] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q13.12	JPH2	rs6031431-G	0.5416	1E-9		0.1523	[0.1-0.2] mmHg decrease	Affymetrix [NR] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.12	NR	rs6031431-A	0.6831	9E-10	(East Asian)	0.4133	[0.28-0.55] unit decrease	Illumina [6200000] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.12	JPH2	rs6031431-A	0.6832	2E-11	(East Asian)	0.3207	[0.23-0.41] unit decrease	Illumina [6200000] (imputed)	N
911	chr20	42795151	42795152	rs6031431	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.12	NR	rs6031431-A	0.6832	2E-10	(East Asian)	0.2711	[0.19-0.35] unit decrease	Illumina [6200000] (imputed)	N
911	chr20	42795151	42795152	rs6031431	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	20q13.12	JPH2	rs6031431-?	NR	3E-9		0.02443	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
911	chr20	42795151	42795152	rs6031431	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	20q13.12	JPH2	rs6031431-?	NR	3E-9		0.02443	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
911	chr20	42797357	42797358	rs6031435	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.12	JPH2	rs6031435-A	0.69	2E-6	(Japanese)	0.3894	[0.23-0.55] unit decrease	Illumina [6200000] (imputed)	N
911	chr20	42797357	42797358	rs6031435	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.12	JPH2	rs6031435-A	0.6924	2E-6	(Japanese)	0.2752	[0.16-0.39] unit decrease	Illumina [6200000] (imputed)	N
911	chr20	42797357	42797358	rs6031435	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.12	JPH2	rs6031435-A		2E-8		0.214	unit decrease	Affymetrix [at least 2696785] (imputed)	N
911	chr20	42797357	42797358	rs6031435	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20q13.12	JPH2	rs6031435-A		5E-6		0.165	unit decrease	Affymetrix [at least 2696785] (imputed)	N
911	chr20	42797357	42797358	rs6031435	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.12	JPH2	rs6031435-A		3E-11		0.17	unit decrease	Affymetrix [at least 2696785] (imputed)	N
911	chr20	42797872	42797873	rs6103666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.12		rs6103666-?	NR	1E-8				NR [~ 8900000] (imputed)	N
911	chr20	42804025	42804026	rs6017281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q13.12		rs6017281-G	NR	1E-14		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
911	chr20	42804025	42804026	rs6017281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q13.12		rs6017281-G	NR	2E-10		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
911	chr20	42804025	42804026	rs6017281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.12		rs6017281-?	NR	2E-14				NR [~ 8900000] (imputed)	N
911	chr20	42804580	42804581	rs6031436	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q13.12		rs6031436-G	NR	5E-11		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
911	chr20	42810047	42810048	rs13041775	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	20q13.12		rs13041775-C	0.142543	4E-8		0.0170898	[0.011-0.023] unit increase	Illumina [7980478] (imputed)	N
911	chr20	42815737	42815738	rs6031444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6031444-T	0.57582	5E-12				Affymetrix, Illumina [23472807] (imputed)	N
911	chr20	42815737	42815738	rs6031444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.12	NR	rs6031444-T	0.560838	3E-14		0.014841	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
911	chr20	42815794	42815795	rs2235808	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	20q13.12	JPH2	rs2235808-C	0.85	3E-7	(EA)	0.006	[0.0036-0.0084] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
911	chr20	42816844	42816845	rs6103669	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.12		rs6103669-A	NR	3E-14		0.0194	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
911	chr20	42816844	42816845	rs6103669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.12	JPH2	rs6103669-A	0.28524	5E-12		0.017253168	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr20	42816844	42816845	rs6103669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6103669-A	0.271546	3E-16				Affymetrix, Illumina [24588908] (imputed)	N
911	chr20	42816844	42816845	rs6103669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.12	NR	rs6103669-A	0.283163	4E-19		0.018297	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
911	chr20	42817033	42817039	rs11469915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.12	JPH2	rs11469915-C	0.351406	1E-19		0.021254629	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr20	42817033	42817039	rs11469915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.12	JPH2	rs11469915-C	0.351425	6E-14		0.017611818	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42817033	42817039	rs11469915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.12	JPH2	rs11469915-C	0.35139	5E-12		0.016078431	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42817033	42817039	rs11469915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	20q13.12	JPH2	rs11469915-C	0.3525	9E-14		0.02808226	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42817033	42817039	rs11469915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	20q13.12	JPH2	rs11469915-C	0.3525	9E-11		0.02435906	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42817838	42817839	rs76038473	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.12	NR	rs76038473-T	0.01916	1E-8	(PSMD14)	0.06606	NR unit decrease	Illumina [1671387] (imputed)	N
911	chr20	42838549	42838550	rs2143606	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.12		rs2143606-A	0.546	2E-13				Affymetrix [10369434] (imputed)	N
911	chr20	42838549	42838550	rs2143606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.12	OSER1	rs2143606-G	0.454731	2E-16		0.020164356	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42838549	42838550	rs2143606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q13.12	OSER1	rs2143606-G	0.4559	2E-20		0.03316579	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42838711	42838712	rs2143607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20q13.12		rs2143607-G	NR	1E-20		0.0193	[0.015-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
911	chr20	42838711	42838712	rs2143607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.12	OSER1	rs2143607-G	0.432669	3E-13		0.018217353	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42838711	42838712	rs2143607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs2143607-G	0.454317	2E-30				Affymetrix, Illumina [23467995] (imputed)	N
911	chr20	42838711	42838712	rs2143607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q13.12	NR	rs2143607-G	0.433523	9E-32		0.02229	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
911	chr20	42839174	42839175	rs41307187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.12	OSER1	rs41307187-C	0.252574	8E-11		0.016791185	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42839403	42839404	rs731498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.12	OSER1	rs731498-C	0.125832	2E-11		0.023450429	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42839460	42839461	rs731499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.12	OSER1, OSER1-AS1	rs731499-A	0.265124	4E-11		0.01689107	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42839460	42839461	rs731499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.12		rs731499-?	NR	3E-11				NR [~ 8900000] (imputed)	N
911	chr20	42839460	42839461	rs731499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.12		rs731499-?	NR	1E-9				NR [~ 8900000] (imputed)	N
911	chr20	42839619	42839620	rs4142441	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.12		rs4142441-?	NR	5E-8				Affymetrix [NR] (imputed)	N
911	chr20	42839619	42839620	rs4142441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.12	OSER1-AS1	rs4142441-G	0.150668	4E-20		0.031904455	[0.025-0.039] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42839619	42839620	rs4142441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.12	OSER1-AS1	rs4142441-G	0.150689	7E-12		0.024016874	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
911	chr20	42839619	42839620	rs4142441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q13.12	OSER1-AS1	rs4142441-G	0.154	3E-19		0.04533454	[0.035-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42839619	42839620	rs4142441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q13.12	OSER1-AS1	rs4142441-G	0.154	4E-11		0.03335394	[0.023-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42839619	42839620	rs4142441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q13.12	OSER1-AS1	rs4142441-G	0.1541	2E-20		0.04678187	[0.037-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
911	chr20	42848220	42848221	rs13043176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.12	OSER1-AS1	rs13043176-G	0.239313	6E-15		0.020812519	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr20	42848220	42848221	rs13043176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.12	OSER1-AS1	rs13043176-G	0.239602	1E-9		0.0148876	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
911	chr20	42854133	42854134	rs6017291	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	20q13.12	RP5-995J12.2	rs6017291-?	NR	6E-6	(Delayed Story Recall)			Illumina [up to 563855]	N
912	chr20	42861820	42861821	rs190457471	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		20q13.12	Intergenic	rs190457471-A	0.004	5E-6	(liability model)	0.68	[0.39-0.97] unit increase	NR [19725427] (imputed)	N
912	chr20	42876305	42876306	rs75172958	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	20q13.12	NR	rs75172958-?	NR	3E-6		1748.7869	NR unit decrease	Illumina [2379855]	N
912	chr20	42905414	42905415	rs76811102	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.12	HNF4A	rs76811102-T	0.0424	1E-7		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
912	chr20	42923298	42923299	rs11907319	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	20q13.12	FITM2	rs11907319-T	0.8099	9E-6		14.3351	[8.45-20.22] unit increase	Illumina [~ 6000000] (imputed)	N
912	chr20	42939425	42939426	rs4812818	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.12	FITM2	rs4812818-G	0.801995	6E-17		0.0240708	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
912	chr20	42946965	42946966	rs6017317	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	20q13.12	FITM2, R3HDML, HNF4A	rs6017317-G	0.48	1E-11		1.09	[1.07-1.12]	Affymetrix, Illumina [2626356] (imputed)	N
912	chr20	42965810	42965811	rs144098855	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	20q13.12	R3HDML	rs144098855-T	0.0014	1E-7		0.1718	[0.11-0.23] unit increase	Affymetrix, Illumina [at least 228985]	N
912	chr20	42965810	42965811	rs144098855	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	20q13.12	R3HDML	rs144098855-T	0.0017	1E-7		0.1706	[0.11-0.23] unit increase	Affymetrix, Illumina [at least 228985]	N
912	chr20	42979570	42979571	rs187497509	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.12	R3HDML	rs187497509-G	1.0	5E-6	(AA)	0.404	unit increase	Illumina [NR] (imputed)	N
912	chr20	42981623	42981624	rs67897819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q13.12		rs67897819-A	NR	2E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
912	chr20	42984362	42984363	rs188520200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	20q13.12		rs188520200-C	0.019484596	9E-10		0.22817627	[0.16-0.3] unit increase	Illumina [13134967] (imputed)	N
912	chr20	42989266	42989267	rs4812829	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	20q13.12	NR	rs4812829-A	NR	3E-11		0.0221	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
912	chr20	42989266	42989267	rs4812829	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	20q13.12	HNF4A	rs4812829-A	0.16	4E-10		0.057	[0.039-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
912	chr20	42989266	42989267	rs4812829	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	20q13.12	HNF4A	rs4812829-A	0.16	5E-8		1.07	[1.01-1.12]	Affymetrix, Illumina [2500000] (imputed)	N
912	chr20	42989266	42989267	rs4812829	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	20q13.12	HNF4A	rs4812829-A	0.29	3E-10		1.09	[1.06-1.12]	Illumina [568976]	N
912	chr20	42989776	42989777	rs16988991	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	20q13.12	HNF4A	rs16988991-A	0.45	4E-9		1.05	1.04-1.07	Illumina [12557761] (imputed)	N
913	chr20	42993327	42993328	rs113810779	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	20q13.12	NR	rs113810779-C	0.1952	2E-9		0.0666	[0.045-0.088] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
913	chr20	42994811	42994812	rs12625671	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.12	NR	rs12625671-C	0.1135	7E-19		0.0653	[0.051-0.08] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
913	chr20	42994811	42994812	rs12625671	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.12	NR	rs12625671-C	0.2326	6E-28		0.0603	[0.05-0.071] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
913	chr20	42994811	42994812	rs12625671	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	20q13.12	HNF4A	rs12625671-C	0.442	2E-21		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
913	chr20	42999629	42999630	rs6103716	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	20q13.12	HNF4A	rs6103716-C	0.39	5E-10		1.1210762	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
913	chr20	43001720	43001721	rs4810426	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.12	HNF4A	rs4810426-T	0.1064	3E-17		1.09	[1.07-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
913	chr20	43001720	43001721	rs4810426	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	20q13.12	HNF4A	rs4810426-T	0.096788799683677	2E-8		0.0726	[0.047-0.098] unit increase	NR [5035015] (imputed)	N
913	chr20	43002909	43002910	rs6031563	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	20q13.12		rs6031563-T	0.79373998	2E-12		1.0751232	[1.053691765-1.096990514]	Illumina [8919992] (imputed)	N
913	chr20	43005014	43005015	rs6065725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.12		rs6065725-G	0.788013289	3E-12		0.079116665	[0.057-0.101] unit increase	Illumina [13429769] (imputed)	N
913	chr20	43023354	43023355	rs191830490	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.12	HNF4A	rs191830490-G	0.9941	2E-6		1.24	[1.13-1.36]	Affymetrix, Illumina [~ 27000000] (imputed)	N
913	chr20	43030865	43030866	rs2071199	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	20q13.12	HNF4A-AS1	rs2071199-T	NR	1E-8	(Bacilli class)	0.32	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
913	chr20	43034015	43034016	rs736820	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.12	HNF4A	rs736820-A	0.3682	2E-9		0.0021	[0.0013-0.0029] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
913	chr20	43034467	43034468	rs2868095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.12	HNF4A	rs2868095-G	0.572278	2E-9		0.01341964	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
913	chr20	43035137	43035138	rs3212183	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q13.12		rs3212183-T	NR	4E-9		0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
913	chr20	43036451	43036452	rs8114057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20q13.12		rs8114057-A	NR	1E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
913	chr20	43036451	43036452	rs8114057	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q13.12	MIR3646	rs8114057-G	0.535748	2E-10		0.00245612	[0.0017-0.0032] unit increase	Affymetrix [13995440] (imputed)	N
913	chr20	43038719	43038720	rs142773928	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20q13.12	HNF4A	rs142773928-A	0.166	4E-9		0.031688	[0.021-0.042] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
913	chr20	43039536	43039537	rs11574736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	20q13.12	NR	rs11574736-C	NR	4E-11		0.0211	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
913	chr20	43039536	43039537	rs11574736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q13.12	NR	rs11574736-C	NR	4E-17		0.0282	[0.022-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	20q13.12	NR	rs6073431-T	0.530809	5E-24		0.0309435	[0.025-0.037] unit increase	Affymetrix [16577313] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.12	NR	rs6073431-T	0.531115	5E-92		0.0169942	[0.015-0.019] unit increase	Affymetrix [16582909] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q13.12	NR	rs6073431-T	0.5317000000000001	6E-43		0.0167792	[0.014-0.019] unit increase	Affymetrix [16585854] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.12	NR	rs6073431-T	0.531115	2E-73		0.0170583	[0.015-0.019] unit increase	Affymetrix [16582965] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q13.12	NR	rs6073431-T	0.5317000000000001	2E-32		0.0165704	[0.014-0.019] unit increase	Affymetrix [16585866] (imputed)	N
913	chr20	43040568	43040569	rs6073431	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	20q13.12	NR	rs6073431-C	0.46831	4E-9		0.0145654	[0.0095-0.0196] unit increase	Affymetrix [16585745] (imputed)	N
913	chr20	43042353	43042354	rs137853336	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	20q13.12		rs137853336-?	NR	2E-68		1.30878	[1.16-1.46] unit decrease	NR [9800000] (imputed)	N
913	chr20	43042353	43042354	rs137853336	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	20q13.12		rs137853336-?	NR	6E-11		0.489863	[0.34-0.64] unit increase	NR [9800000] (imputed)	N
913	chr20	43042353	43042354	rs137853336	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	20q13.12		rs137853336-?	NR	5E-14		0.533776	[0.38-0.68] unit decrease	NR [9800000] (imputed)	N
913	chr20	43042353	43042354	rs137853336	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Apolipoprotein A1 levels	398,508 European ancestry individuals	NA	20q13.12		rs137853336-?	NR	5E-18		0.63516	[0.48-0.79] unit decrease	NR [9800000] (imputed)	N
913	chr20	43042353	43042354	rs137853336	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q13.12	NR	rs137853336-T	NR	4E-26		1.0262	[0.84-1.22] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969803	5E-10		0.0741336	[0.051-0.098] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-10		0.0733759	[0.051-0.096] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-10		0.072838	[0.05-0.095] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969801	5E-10		0.0747575	[0.051-0.098] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-10		0.0747294	[0.052-0.098] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-8		0.0621872	[0.04-0.084] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-9		0.0687286	[0.046-0.091] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-14		0.0887192	[0.066-0.111] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-12		0.0842253	[0.061-0.108] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	7E-24		0.112737	[0.091-0.135] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-9		0.0691488	[0.046-0.092] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	9E-19		0.0935851	[0.073-0.114] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-26		0.114978	[0.094-0.136] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-8		0.0645363	[0.041-0.088] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total esterified cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-13		0.0864156	[0.064-0.109] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	7E-30		0.128916	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	4E-17		0.0954274	[0.073-0.118] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-12		0.0805991	[0.058-0.103] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	7E-19		0.100042	[0.078-0.122] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	6E-10		0.0725012	[0.05-0.095] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-17		0.099434	[0.076-0.122] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-24		0.116829	[0.094-0.139] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969801	8E-15		0.0908159	[0.068-0.114] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-9		0.0725772	[0.049-0.096] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	9E-12		0.0814208	[0.058-0.105] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-20		0.104	[0.082-0.126] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-18		0.0922268	[0.071-0.113] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-23		0.108046	[0.087-0.129] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	6E-16		0.0920164	[0.07-0.114] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	3E-16		0.0921772	[0.07-0.114] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969806	2E-10		0.0748822	[0.052-0.098] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-29		0.122053	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969797	2E-13		0.0787598	[0.058-0.1] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-26		0.11321	[0.092-0.134] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969801	3E-11		0.0794412	[0.056-0.103] unit decrease	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-18		0.103686	[0.081-0.127] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-27		0.118948	[0.097-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	8E-9		0.0682823	[0.045-0.092] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-16		0.0873022	[0.067-0.108] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	6E-26		0.112565	[0.092-0.133] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-10		0.0683219	[0.047-0.09] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-15		0.095431	[0.072-0.119] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-26		0.118685	[0.097-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-20		0.0977985	[0.077-0.118] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-31		0.131332	[0.11-0.15] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1800961-C	0.969797	4E-12		0.083131	[0.06-0.107] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-11		0.0777018	[0.055-0.101] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-13		0.087175	[0.063-0.111] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-10		0.0726624	[0.05-0.095] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-9		0.0710049	[0.048-0.094] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	6E-11		0.0707163	[0.05-0.092] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-15		0.0965922	[0.073-0.12] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-28		0.122445	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-8		0.065569	[0.042-0.089] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-19		0.09593	[0.075-0.117] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-30		0.12341	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-9		0.0705739	[0.047-0.094] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-16		0.0947155	[0.072-0.117] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	5E-19		0.104213	[0.081-0.127] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	6E-10		0.0701112	[0.048-0.092] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-10		0.0750529	[0.052-0.098] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	4E-9		0.0641943	[0.043-0.086] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-17		0.102232	[0.079-0.126] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	3E-28		0.122365	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-8		0.0667597	[0.043-0.09] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	7E-19		0.0942711	[0.073-0.115] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	2E-11		0.0717205	[0.051-0.093] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20q13.12		rs1800961-C	0.9698	1E-28		0.122528	[0.1-0.14] unit increase	NR [11722792] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	1E-50		0.0933	[0.081-0.105] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	3E-23		0.0618	[0.05-0.074] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	4E-9		0.0371	[0.025-0.049] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	1E-15		0.0439	[0.033-0.055] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	7E-13		0.0468	[0.034-0.06] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	20q13.12		rs1800961-T	NR	9E-14		0.2064	[0.15-0.26] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	2E-22		0.0634	[0.051-0.076] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	5E-22		0.0493	[0.039-0.059] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	3E-21		0.0497	[0.04-0.06] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	2E-99		0.133	[0.12-0.15] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	1E-19		0.0542	[0.042-0.066] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	20q13.12		rs1800961-T	NR	2E-38		0.3186	[0.27-0.37] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	20q13.12		rs1800961-T	NR	1E-9		0.2466	[0.17-0.33] unit increase	Affymetrix, Illumina [25842273] (imputed)	N
913	chr20	43042363	43042364	rs1800961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q13.12		rs1800961-T	NR	4E-52		0.1005	[0.088-0.113] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	20q13.12	MIR3646	rs1800961-C	0.968994	2E-23		0.014741	[0.012-0.018] unit decrease	Affymetrix [13995440] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	6E-19		0.0613	[0.048-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	8E-63		0.1153	[0.1-0.13] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	3E-22		0.067	[0.053-0.081] unit increase	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	4E-29		0.0773	[0.064-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	2E-96		0.1502	[0.14-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	5E-17		0.0578	[0.044-0.071] unit increase	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	1E-20		0.0688	[0.054-0.083] unit increase	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	7E-54		0.1066	[0.093-0.12] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	6E-14		0.0518	[0.038-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	NR	5E-108		0.1594	[0.15-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.03	2E-21		0.0513	[0.041-0.062] unit decrease	NR [NR]	N
913	chr20	43042363	43042364	rs1800961	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q13.12	HNF4A	rs1800961-?		1E-13		0.0901	[0.066-0.114] unit increase	Illumina [31500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q13.12	HNF4A	rs1800961-?		3E-17		0.1125	[0.086-0.139] unit increase	Illumina [31500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Membrane-bound aminopeptidase P levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs1800961-T	0.042	4E-10		0.2428	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031101	8E-10		0.03915662	[0.027-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031091	4E-20		0.0583865	[0.046-0.071] unit increase	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031115	1E-12		0.045541454	[0.033-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031101	3E-17		0.05392499	[0.041-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031121	2E-10		0.0409991	[0.028-0.054] unit increase	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031089	9E-31		0.07351248	[0.061-0.086] unit increase	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.12	HNF4A	rs1800961-T	0.031087	3E-27		0.069305256	[0.057-0.082] unit increase	Affymetrix [93095623] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.0264491	9E-12				Affymetrix, Illumina [24649327] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.031105	1E-12		0.037829	[0.027-0.048] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.0263825	1E-31				Affymetrix, Illumina [24332387] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.031127	2E-32		0.063432	[0.053-0.074] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.0279128	2E-19				Affymetrix, Illumina [23114412] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.031018	9E-21		0.051942	[0.041-0.063] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.0265034	5E-44				Affymetrix, Illumina [24653286] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.031107	3E-44		0.074343	[0.064-0.085] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.0265882	2E-46				Affymetrix, Illumina [24558453] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.12	NR	rs1800961-T	0.031101	2E-46		0.076235	[0.066-0.087] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T		6E-24		0.059	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-C	0.969087	4E-23		0.0596747	[0.048-0.071] unit increase	Affymetrix [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-C	0.968998	1E-140		0.139041	[0.13-0.15] unit increase	Affymetrix [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-C	0.969091	1E-11		0.0408629	[0.029-0.053] unit increase	Affymetrix [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-C	0.968937	2E-152		0.148995	[0.14-0.16] unit increase	Affymetrix [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20q13.12	HNF4A	rs1800961-?	NR	5E-28		0.0807	[0.068-0.094] unit decrease	Affymetrix [5701386] (imputed)	N
913	chr20	43042363	43042364	rs1800961	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.12	NR	rs1800961-C	0.968688	8E-75		0.107274	[0.096-0.119] unit increase	NR [NR]	N
913	chr20	43042363	43042364	rs1800961	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314816	1E-14		0.138848	[0.1-0.17] unit increase	Affymetrix [9463307] (imputed)	N
913	chr20	43042363	43042364	rs1800961	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0339	2E-10		0.075792	[0.053-0.099] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
913	chr20	43042363	43042364	rs1800961	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	20q13.12	NR	rs1800961-?	NR	9E-12		2.227338	[1.59-2.87] unit decrease	Illumina [31978362] (imputed)	N
913	chr20	43042363	43042364	rs1800961	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	20q13.12	NR	rs1800961-?	NR	1E-7		0.1271606	[0.08-0.174] unit decrease	Illumina [30861016] (imputed)	N
913	chr20	43042363	43042364	rs1800961	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	20q13.12	HNF4A	rs1800961-T	0.0308713	1E-12		0.23739344	[0.17-0.3] unit increase	Affymetrix [7288503] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	20q13.12		rs1800961-T	0.0332	2E-17		0.0339	[0.026-0.042] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	3E-12				Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	2E-12				Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	1E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	4E-6		2.153	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	9E-17	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	5E-64				Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	4E-47	(EA)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	HNF4A	rs1800961-T	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	4E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	4E-17	(Hispanic)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	2E-50	(EA)			Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	HNF4A	rs1800961-T	NR	1E-71				Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	5E-23	(EA)	0.033	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	4E-34		0.033	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	2E-12	(Hispanic)	0.052	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	7E-11	(EA)	0.03209	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	3E-20		0.03052	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	HNF4A	rs1800961-T	NR	2E-6	(HIspanic)	0.04294	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	20q13.12	NR	rs1800961-T	0.0337	6E-36				Affymetrix, Illumina [at least 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30642921	de Vries PS	2019-01-14	Blood	A genome-wide association study identifies new loci for factor VII and implicates factor VII in ischemic stroke etiology.	Factor VII activity	20,014 European ancestry individuals, 3,420 African American individuals	NA	20q13.12	HNF4A	rs1800961-C	0.97	7E-7		0.032	[0.02-0.044] unit increase	Affymetrix, Illumina [10044948] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.12		rs1800961-?	NR	5E-10				NR [~ 8900000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	20q13.12		rs1800961-?	NR	2E-11				NR [~ 8900000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.12		rs1800961-?	NR	6E-22				NR [~ 8900000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	20q13.12	HNF4A	rs1800961-?		6E-26		1.29	[1.23-1.35]	Affymetrix, Illumina [43000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	20q13.12	HNF4A	rs1800961-C	0.03	5E-23		0.112	[0.09-0.134] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.04	6E-19	(BMI-adjusted)	0.104	[0.08-0.128] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.12	HNF4A	rs1800961-T	0.0353	2E-22		1.18	[1.15-1.23]	Affymetrix, Illumina [~ 27000000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.12	HNF4A	rs1800961-T	0.0303	2E-65		0.1408	[0.12-0.16] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	20q13.12	HNF4A	rs1800961-A	0.0388	2E-7		0.1586	[0.099-0.218] unit decrease	Illumina [~ 200000]	N
913	chr20	43042363	43042364	rs1800961	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	20q13.12	HNF4A	rs1800961-T	0.035	7E-7		1.09	[1.05-1.13]	Affymetrix, Illumina [247470]	N
913	chr20	43042363	43042364	rs1800961	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	20q13.12	HNF4A	rs1800961-T	0.0316	5E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [247470]	N
913	chr20	43042363	43042364	rs1800961	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	20q13.12	HNF4A	rs1800961-T	0.035	3E-6		1.09	[1.04-1.13]	Affymetrix, Illumina [247470]	N
913	chr20	43042363	43042364	rs1800961	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	20q13.12	HNF4A	rs1800961-T	0.0316	3E-8		1.09	[1.05-1.13]	Affymetrix, Illumina [247470]	N
913	chr20	43042363	43042364	rs1800961	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-C	NR	5E-10		0.076	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr20	43042363	43042364	rs1800961	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-C	0.969	1E-7	(EA)	0.071	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr20	43042363	43042364	rs1800961	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-C	NR	6E-36		0.126	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr20	43042363	43042364	rs1800961	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-C	0.969	9E-29	(EA)	0.121	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr20	43042363	43042364	rs1800961	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs1800961-C	0.96	5E-6	(Hispanic)	0.143	unit increase	Affymetrix [at least 7091467] (imputed)	N
913	chr20	43042363	43042364	rs1800961	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		20q13.12	HNF4A	rs1800961-?	NR	7E-9		0.0183	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
913	chr20	43042363	43042364	rs1800961	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		20q13.12	HNF4A	rs1800961-?	NR	2E-9		0.0178	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	9E-12		0.07026628	[0.05-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	1E-11		0.06967677	[0.049-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0313	1E-10		0.06643613	[0.046-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	6E-12		0.07093605	[0.051-0.091] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	7E-10		0.06386389	[0.044-0.084] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	6E-10		0.06280401	[0.043-0.083] unit increase	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.0314	2E-11		0.06908321	[0.049-0.089] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or total cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 100,184 individuals (total cholesterol)	NA	20q13.12	HNF4A	rs1800961-T	NR	1E-20				NR [2501549] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or LDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 95,454 individuals (LDL-cholesterol)	NA	20q13.12	HNF4A	rs1800961-T	NR	4E-14				NR [2501749] (imputed)	N
913	chr20	43042363	43042364	rs1800961	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	20q13.12	HNF4A	rs1800961-T	NR	4E-28				NR [2501543] (imputed)	N
913	chr20	43042363	43042364	rs1800961	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.03	1E-10		0.017	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-C	0.96	5E-20		0.149	[0.12-0.18] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
913	chr20	43042363	43042364	rs1800961	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	HNF4A	rs1800961-T	0.05	2E-34		0.127	[NR] unit decrease	NR [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	HNF4A	rs1800961-T	0.05	1E-24		0.106	[NR] unit decrease	NR [NR] (imputed)	N
913	chr20	43042363	43042364	rs1800961	22939635	Reiner AP	2012-08-28	Am J Hum Genet	Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.	C-reactive protein	8,280 African American female individuals, 3,548 Hispanic female individuals	3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals	20q13.12	HNF4A	rs1800961-T	0.04	8E-6	(HA women)	0.268	[0.15-0.39] unit decrease	Affymetrix [up to 2203609] (imputed)	N
913	chr20	43042363	43042364	rs1800961	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	20q13.12	HNF4A	rs1800961-C	NR	2E-9		0.088	[0.06-0.12] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.03	1E-15		1.88	[1.41-2.35] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	20q13.12	HNF4A	rs1800961-T	0.03	6E-13		4.73	[3.44-6.02] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
913	chr20	43042363	43042364	rs1800961	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	HNF4A	rs1800961-T	0.03	8E-10		0.19	[0.09-0.29] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
913	chr20	43044361	43044362	rs3212198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20q13.12		rs3212198-T	NR	5E-21		0.0172	[0.014-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
913	chr20	43048413	43048414	rs139779712	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	20q13.12		rs139779712-?	NR	2E-15		0.299197	[0.22-0.37] unit decrease	NR [9800000] (imputed)	N
913	chr20	43048413	43048414	rs139779712	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum albumin levels	400,938 European ancestry individuals	NA	20q13.12		rs139779712-?	NR	1E-10		0.262094	[0.18-0.34] unit decrease	NR [9800000] (imputed)	N
913	chr20	43048413	43048414	rs139779712	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20q13.12	NR	rs139779712-A	NR	7E-10		0.2885	[0.2-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43054440	43054441	rs6130613	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	20q13.12	NR	rs6130613-T	0.469842	3E-15		0.0105361	[0.008-0.0131] unit increase	Affymetrix [16578495] (imputed)	N
913	chr20	43054870	43054871	rs6031596	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	20q13.12	HNF4A	rs6031596-A	0.6658	2E-7	(Japanese)	0.0218	[0.014-0.03] unit increase	Illumina [1986983] (imputed)	N
913	chr20	43056148	43056149	rs6031598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	20q13.12	NR	rs6031598-T	NR	6E-10		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
913	chr20	43056148	43056149	rs6031598	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20q13.12	HNF4A	rs6031598-T	0.535	2E-12		0.0222	[0.016-0.028] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
913	chr20	43056148	43056149	rs6031598	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	20q13.12	NR	rs6031598-T	0.5163	6E-6	(men)	0.0229	[0.013-0.033] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
913	chr20	43056148	43056149	rs6031598	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	20q13.12	HNF4A	rs6031598-T	0.378	3E-8	(Japanese)	0.023	[0.015-0.031] unit decrease	Illumina [5864938] (imputed)	N
913	chr20	43057479	43057480	rs3818247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q13.12	NR	rs3818247-T	NR	3E-21		0.0247	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
913	chr20	43058017	43058018	rs3746574	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20q13.12	NR	rs3746574-T	0.48	1E-15		0.015	[0.011-0.019] unit increase	NR [NR]	N
913	chr20	43058095	43058096	rs3746575	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.12	NR	rs3746575-G	0.596862	5E-49		0.0172653	[0.015-0.02] unit increase	Affymetrix [16582621] (imputed)	N
913	chr20	43058095	43058096	rs3746575	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.12	NR	rs3746575-G	0.596862	2E-43		0.0174888	[0.015-0.02] unit increase	Affymetrix [16582614] (imputed)	N
913	chr20	43064653	43064654	rs12480807	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	20q13.12	HNF4A	rs12480807-G		3E-6		0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
913	chr20	43065027	43065028	rs6017342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	20q13.12		rs6017342-C	NR	7E-11		0.1285	[0.09-0.167] unit increase	Affymetrix, Illumina [25840981] (imputed)	N
913	chr20	43065027	43065028	rs6017342	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	20q13.12	NR	rs6017342-A	0.48	2E-14		0.88	[NR]	NR [8546065] (imputed)	N
913	chr20	43065027	43065028	rs6017342	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	20q13.12	C20orf62, SERINC3, PKIG, Z97053.1, TTPAL, ADA	rs6017342-?		4E-30				Illumina [9578670] (imputed)	N
913	chr20	43065027	43065028	rs6017342	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q13.12	C20orf62, SERINC3, PKIG, Z97053.1, TTPAL, ADA	rs6017342-?		1E-17				Illumina [9725440] (imputed)	N
913	chr20	43065027	43065028	rs6017342	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	20q13.12	HNF4A, ADA	rs6017342-C	0.53	1E-43		1.228	[1.185-1.273]	Affymetrix, Illumina [1230000] (imputed)	N
913	chr20	43065027	43065028	rs6017342	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	20q13.12	SERINC3	rs6017342-C	0.54	1E-20		1.2	[1.15-1.26]	Affymetrix, Illumina [~ 1100000] (imputed)	N
913	chr20	43065027	43065028	rs6017342	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	20q13.12	HNF4A	rs6017342-C	0.52	9E-17		1.17	[1.09-1.26]	Affymetrix [NR]	N
913	chr20	43068995	43068996	rs4812833	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.12	HNF4A	rs4812833-?	NR	7E-16	(subset analysis)			Illumina [130052]	N
913	chr20	43068995	43068996	rs4812833	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.12	NR	rs4812833-A	0.52	2E-16	(EA)	1.1088746		Affymetrix, Illumina [~ 9000000] (imputed)	N
913	chr20	43068995	43068996	rs4812833	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.12	NR	rs4812833-A	0.52	9E-6	(EA)	1.0450912		Affymetrix, Illumina [~ 9000000] (imputed)	N
913	chr20	43086647	43086648	rs6073450	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	20q13.12	PKIG, HNF4A	rs6073450-A	0.37	5E-6		1.09	[1.05 - 1.13]	Illumina [11381182] (imputed)	N
913	chr20	43086647	43086648	rs6073450	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	20q13.12	intergenic	rs6073450-A	0.381	9E-7		1.11	[1.06-1.15]	Illumina [866891] (imputed)	N
914	chr20	43190371	43190372	rs79493594	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.12	PKIG	rs79493594-?	NR	4E-7	(subset analysis)			Illumina [130052]	N
914	chr20	43232079	43232080	rs117160832	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.12	NR	rs117160832-T	NR	4E-10		0.043	[0.029-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
914	chr20	43232079	43232080	rs117160832	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.12	NR	rs117160832-T	NR	7E-11		0.0471	[0.033-0.061] unit decrease	Affymetrix [9000000] (imputed)	N
914	chr20	43240655	43240656	rs531416278	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.12		rs531416278-G	NR	3E-18		0.5837	[0.45-0.72] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
914	chr20	43252647	43252648	rs112545364	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Adenosine Deaminase levels	982 Scottish ancestry individuals	NA	20q13.12	NR	rs112545364-G	0.06428	4E-31		1.076	[0.89-1.26] unit increase	Illumina [7903493] (imputed)	N
915	chr20	43255219	43255220	rs11555566	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20q13.12	ADA	rs11555566-T	0.937086	4E-26	(adenosine)	0.4	[0.33-0.47] unit decrease	Illumina [13039987] (imputed)	N
915	chr20	43271391	43271392	rs406383	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20q13.12	ADA	rs406383-C	0.744397	2E-24	(N1-methyladenosine)	0.267	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
915	chr20	43271391	43271392	rs406383	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	20q13.12	ADA	rs406383-C	0.744397	2E-24	(N1-methyladenosine)	0.267	[0.22-0.32] unit increase	Illumina [13039987] (imputed)	N
915	chr20	43325659	43325660	rs2038893	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP2	5,364 Icelandic ancestry individuals	NA	20q13.12		rs2038893-A	0.4095	1E-13		0.120312	[0.089-0.152] unit decrease	Illumina [7506463] (imputed)	N
915	chr20	43356155	43356156	rs1061098	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP2	5,364 Icelandic ancestry individuals	NA	20q13.12		rs1061098-T	0.3392	3E-32		0.199465	[0.17-0.23] unit decrease	Illumina [7506463] (imputed)	N
915	chr20	43356155	43356156	rs1061098	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	WISP2	rs1061098-C	0.6625	5E-21	(WISP2, 6392_7_3)	0.21278913	[0.17-0.26] unit increase	Illumina [> 1000000] (imputed)	N
915	chr20	43371319	43371320	rs11696845	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.12	KCNK15, WISP2, RIMS4	rs11696845-A	0.355	5E-7	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
916	chr20	43408371	43408372	rs79564737	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	20q13.12	RIMS4	rs79564737-?	NR	9E-9		0.0151755	[0.01-0.0204] unit increase	Affymetrix [25921788] (imputed)	N
916	chr20	43467379	43467380	rs6017427	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast skipping	1,359 European ancestry cases, 10,604 European ancestry controls	NA	20q13.12	RIMS4, YWHAB	rs6017427-A	0.142	3E-8		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina [up to 38050714] (imputed)	N
916	chr20	43467379	43467380	rs6017427	31190057	Dashti HS	2019-06-13	Am J Clin Nutr	Genome-wide association study of breakfast skipping links clock regulation with food timing.	Breakfast cereal skipping frequency	193,860 European ancestry individuals	NA	20q13.12	RIMS4, YWHAB	rs6017427-A	0.142	3E-8		0.0214	[0.014-0.029] unit increase	Affymetrix [up to 73355667] (imputed)	N
916	chr20	43491476	43491477	rs73106136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.12		rs73106136-T	0.0828	1E-8		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
916	chr20	43491476	43491477	rs73106136	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.12	Intergenic	rs73106136-T	0.0828	4E-8	(MTAG)	0.0131	[0.0084-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
916	chr20	43514202	43514203	rs6031847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.12		rs6031847-T	NR	1E-13		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
916	chr20	43514202	43514203	rs6031847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	20q13.12		rs6031847-T	NR	8E-17		0.0207	[0.016-0.026] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
916	chr20	43514336	43514337	rs6031849	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.12	YWHAB	rs6031849-T	0.270517	2E-30		0.029331652	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
916	chr20	43515269	43515270	rs7265519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs7265519-T	0.250124	5E-17				Affymetrix, Illumina [19905671] (imputed)	N
917	chr20	43517040	43517041	rs2284265	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	YWHAB	rs2284265-C	0.7425	3E-11	(YWHAB, 14156_33_3)	0.17612293	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
917	chr20	43518103	43518103	rs11398883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	20q13.12		rs11398883-CT	NR	5E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
917	chr20	43520287	43520289	rs200037216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	20q13.12	YWHAB	rs200037216-T	0.265876	1E-21		0.02423194	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr20	43520287	43520289	rs200037216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q13.12	YWHAB	rs200037216-T	0.26586	8E-22		0.024319777	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr20	43521728	43521729	rs2425670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q13.12		rs2425670-?	NR	4E-8				NR [~ 8900000] (imputed)	N
917	chr20	43525483	43525483	rs139900206	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q13.12		rs139900206-TTA	NR	2E-12		0.0222	[0.016-0.028] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
917	chr20	43525483	43525483	rs139900206	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	20q13.12	NR	rs139900206-TTA	NR	4E-11		0.0252	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
917	chr20	43525483	43525483	rs139900206	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	20q13.12	NR	rs139900206-?		1E-9		0.0198936	[0.013-0.026] unit decrease	Affymetrix [19400418] (imputed)	N
917	chr20	43535162	43535169	rs372424925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	20q13.12		rs372424925-A	NR	1E-11		0.019	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
917	chr20	43536454	43536455	rs8356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.12	NR	rs8356-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
917	chr20	43536454	43536455	rs8356	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.12		rs8356-?	NR	2E-8				NR [~ 8900000] (imputed)	N
917	chr20	43537199	43537200	rs16989483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs16989483-?	NR	2E-25				NR [~ 8900000] (imputed)	N
917	chr20	43538732	43538733	rs2072727	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	20q13.12	NR	rs2072727-T	NR	4E-8		0.696	unit increase	Affymetrix [14661600] (imputed)	N
917	chr20	43538732	43538733	rs2072727	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	20q13.12		rs2072727-T	0.4359	3E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
917	chr20	43538732	43538733	rs2072727	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	20q13.12	PABPC1L	rs2072727-T	0.4327	4E-15		1.0302		Affymetrix [11880941] (imputed)	N
917	chr20	43538732	43538733	rs2072727	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20q13.12	PABPC1L	rs2072727-T	0.4327	4E-15		1.0286014		Affymetrix [11880941] (imputed)	N
917	chr20	43538732	43538733	rs2072727	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	20q13.12		rs2072727-?	NR	4E-9				NR [~ 8900000] (imputed)	N
917	chr20	43543581	43543582	rs6130713	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein YWHAB	5,362 Icelandic ancestry individuals	NA	20q13.12		rs6130713-G	0.2956	5E-19		0.17219	[0.13-0.21] unit decrease	Illumina [7506463] (imputed)	N
917	chr20	43596258	43596259	rs17322191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.12	STK4	rs17322191-T	0.0359120000000001	8E-17		0.05277324	[0.04-0.065] unit increase	Affymetrix [93095623] (imputed)	N
917	chr20	43598153	43598154	rs67651814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20q13.12		rs67651814-?	NR	1E-10				NR [~ 8900000] (imputed)	N
917	chr20	43623657	43623658	rs6017460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.12	STK4	rs6017460-T	0.47272	6E-11		0.014778237	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr20	43623657	43623658	rs6017460	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.12	NR	rs6017460-T	0.475397	2E-10		0.011754	[0.0081-0.0154] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
917	chr20	43629511	43629512	rs6073597	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q13.12	NR	rs6073597-T	0.5134	6E-6		0.0153	[0.0087-0.0219] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
917	chr20	43631435	43631436	rs1015519	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1015519-A	0.448782	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
917	chr20	43633417	43633418	rs11908600	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	20q13.12		rs11908600-?	NR	4E-8		0.0151	NR unit decrease	NR [6265453] (imputed)	N
918	chr20	43669640	43669641	rs6065777	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	20q13.12	NR	rs6065777-T	0.697	3E-7		1.08904		NR [9372253] (imputed)	N
918	chr20	43669640	43669641	rs6065777	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q13.12	NR	rs6065777-T	NR	2E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
918	chr20	43670856	43670856	rs11473792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.12	STK4	rs11473792-CTCT	0.471446	1E-15		0.01859706	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
918	chr20	43678240	43678241	rs6017475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6017475-T	0.531783	8E-40				Affymetrix, Illumina [17210439] (imputed)	N
918	chr20	43678240	43678241	rs6017475	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.12	NR	rs6017475-T	0.526767	2E-41		0.02592	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
918	chr20	43682550	43682551	rs67712855	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	20q13.12	WFDC12	rs67712855-T	0.687	4E-11		1.07004	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
918	chr20	43691983	43691984	rs6073619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs6073619-?	NR	1E-16				NR [~ 8900000] (imputed)	N
918	chr20	43692632	43692633	rs6031966	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	20q13.12	PABPC1L	rs6031966-T	0.467987	1E-8		5.7	z score increase	NR [10847151] (imputed)	N
918	chr20	43692683	43692684	rs35017113	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	NR	rs35017113-C	0.8434375	5E-12	(WFDC5, 6969_14_3)	0.22862197	[0.16-0.29] unit increase	Illumina [> 1000000] (imputed)	N
918	chr20	43692683	43692684	rs35017113	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	NR	rs35017113-C	0.8434375	4E-11	(MATN4, 7083_74_3)	0.22124581	[0.16-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
918	chr20	43695442	43695443	rs6073621	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	20q13.12	NR	rs6073621-A	0.674	1E-9		1.07972	[1.06-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
918	chr20	43699227	43699228	rs6130746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WFDC5	5,362 Icelandic ancestry individuals	NA	20q13.12		rs6130746-A	0.1688	1E-16		0.198927	[0.15-0.25] unit decrease	Illumina [7506463] (imputed)	N
918	chr20	43699227	43699228	rs6130746	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MATN4	5,366 Icelandic ancestry individuals	NA	20q13.12		rs6130746-A	0.1688	6E-25		0.257207	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
918	chr20	43717434	43717435	rs6065784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.12	Intergenic	rs6065784-C	0.686	1E-9	(MTAG)	0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
918	chr20	43717434	43717435	rs6065784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.12		rs6065784-C	0.6953	6E-13		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
918	chr20	43717434	43717435	rs6065784	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.12	Intergenic	rs6065784-C	0.6953	9E-13	(MTAG)	0.0102	[0.0075-0.0129] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
918	chr20	43721492	43721493	rs6124684	22925353	Lee HJ	2012-08-25	J Affect Disord	A genome-wide association study of seasonal pattern mania identifies NF1A as a possible susceptibility gene for bipolar disorder.	Bipolar disorder	2,191 European ancestry cases, 1,434 European ancestry controls	NA	20q13.12	SERINC3	rs6124684-?	NR	9E-6	(NSM vs. Control)	1.73	[NR]	Affymetrix [703012]	N
918	chr20	43722016	43722017	rs6124687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.12	KCNS1	rs6124687-T	0.2129	2E-12		0.03171575	[0.023-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
918	chr20	43739118	43739119	rs17422688	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (hue)	6,236 Latin American individuals	NA	20q13.12	WFDC5	rs17422688-?	NR	2E-8				Illumina [8896142] (imputed)	N
918	chr20	43744731	43744732	rs760365325	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein WISP2	5,364 Icelandic ancestry individuals	NA	20q13.12		rs760365325-T	0.01114	2E-128		1.80106	[1.65-1.95] unit decrease	Illumina [7506463] (imputed)	N
918	chr20	43750409	43750410	rs6130764	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	20q13.12	STK4	rs6130764-T	NR	6E-9		1.067	[1.044-1.091]	Illumina [3742365] (imputed)	N
918	chr20	43750409	43750410	rs6130764	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	20q13.12	STK4, KCNS1, WFDC5, WFDC12, PI3	rs6130764-T	0.569	3E-8		1.06439	[1.04-1.09]	NR [9372253] (imputed)	N
918	chr20	43768733	43768734	rs34602589	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	20q13.12	NR	rs34602589-?	NR	2E-6		0.031763	[0.019-0.045] unit increase	Affymetrix [9658292] (imputed)	N
918	chr20	43773167	43773168	rs6130775	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLPI	5,356 Icelandic ancestry individuals	NA	20q13.12		rs6130775-T	0.4524	1E-15		0.135845	[0.1-0.17] unit decrease	Illumina [7506463] (imputed)	N
918	chr20	43773736	43773737	rs7361168	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q13.12	NR	rs7361168-C	0.758153525448028	3E-6	(IGP15)	0.3571	[0.21-0.51] unit increase	Illumina [~ 2500000] (imputed)	N
919	chr20	43779962	43779963	rs16989763	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	PI3	rs16989763-C	0.195	2E-35	(Elafin, PI3.4982.54.1)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
919	chr20	43808782	43808783	rs6104052	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PI3	5,368 Icelandic ancestry individuals	NA	20q13.12		rs6104052-G	0.2368	5E-45		0.280501	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
919	chr20	43808782	43808783	rs6104052	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	PI3	rs6104052-T	0.7590625	5E-32	(PI3, 4982_54_1)	0.30670428	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
919	chr20	43840708	43840709	rs190905111	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	20q13.12	PI3, SEMG1, SEMG2, SLPI	rs190905111-A	0.949	3E-6		1.15004	[1.09-1.21]	NR [9372253] (imputed)	N
919	chr20	43859098	43859099	rs16989837	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	20q13.12	SLP1, SEMG2	rs16989837-T	0.1	3E-6	(African)	1.39	[1.21-1.60]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
919	chr20	43864808	43864809	rs6032067	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	20q13.12	PI3, SEMG2, SEMG1, SLPI, RP1-300I2.3, RP1-300I2.2	rs6032067-T	0.1750503	3E-14	(EA, Elafin)	0.4028	[0.3-0.51] unit increase	Affymetrix [509946]	N
919	chr20	43879825	43879826	rs6124695	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.12	SLPI	rs6124695-C	NR	3E-6	(G_Faecalitalea_HB)	1.59234	[0.93-2.26] unit decrease	Illumina [7711310] (imputed)	N
920	chr20	43919744	43919745	rs2743334	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	SLPI	rs2743334-A	0.71703125	2E-7	(SLPI, 4413_3_2)	0.13411626	[0.083-0.185] unit decrease	Illumina [> 1000000] (imputed)	N
920	chr20	43924167	43924168	rs11086957	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	MATN4	rs11086957-C	0.7471875	2E-23	(MATN4, 7083_74_3)	0.28762543	[0.23-0.34] unit increase	Illumina [> 1000000] (imputed)	N
920	chr20	43925553	43925554	rs11697677	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	MATN4	rs11697677-G	0.254	3E-16	(Matrilin-4, MATN4.7083.74.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
920	chr20	43928602	43928620	rs371025208	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	20q13.12	NR	rs371025208-?	NR	6E-6		0.027963	[0.016-0.04] unit increase	Affymetrix [9658292] (imputed)	N
920	chr20	43929658	43929659	rs2076023	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MATN4	5,366 Icelandic ancestry individuals	NA	20q13.12		rs2076023-A	0.2572	2E-38		0.280134	[0.24-0.32] unit decrease	Illumina [7506463] (imputed)	N
920	chr20	43944322	43944323	rs6032110	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	20q13.12	STK4	rs6032110-A	0.512	1E-9		1.05908	[1.04-1.08]	Affymetrix, Illumina [7549318] (imputed)	N
920	chr20	43944322	43944323	rs6032110	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	20q13.12	NR	rs6032110-A	0.511	2E-8		1.06705	[1.04-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
920	chr20	43979886	43979887	rs2741441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q13.12		rs2741441-?	NR	6E-11				NR [~ 8900000] (imputed)	N
920	chr20	43980725	43980726	rs1008953	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	20q13.12	SDC4	rs1008953-C	0.79	1E-7		1.14	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
920	chr20	43983391	43983392	rs6065808	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	20q13.12	NR	rs6065808-?	NR	3E-6		0.10475259	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
920	chr20	43986720	43986721	rs184381862	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	20q13.12	NR	rs184381862-?	NR	3E-6		1.4256	[0.93-1.92] unit decrease	Illumina [at least 560000] (imputed)	N
921	chr20	44067564	44067565	rs184392658	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Phospholipid levels in large HDL	8,372 Finnish ancestry males	NA	20q13.12	SYS1	rs184392658-?	NR	6E-9	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
921	chr20	44067564	44067565	rs184392658	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Large HDL particle concentration	8,372 Finnish ancestry males	NA	20q13.12	SYS1	rs184392658-?	NR	2E-7		0.45	unit increase	Illumina [15144991] (imputed)	N
921	chr20	44067564	44067565	rs184392658	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Free cholesterol levels in large HDL	8,372 Finnish ancestry males	NA	20q13.12	SYS1	rs184392658-?	NR	4E-8	(conditioned on 885 SNPs)	0.5	unit increase	Illumina [15144991] (imputed)	N
921	chr20	44089032	44089033	rs58087807	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs58087807-T	0.981503	2E-9		0.086147	[0.058-0.114] unit decrease	NR [11722792] (imputed)	N
921	chr20	44089032	44089033	rs58087807	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	20q13.12		rs58087807-C	NR	8E-6		2.6374	[1.51-3.77] unit increase	Illumina [NR] (imputed)	N
921	chr20	44091162	44091163	rs77888920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs77888920-?	NR	2E-8				NR [~ 8900000] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	1E-9		0.0528405	[0.036-0.07] unit increase	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	2E-10		0.0602434	[0.042-0.079] unit decrease	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953049	3E-11		0.0581052	[0.041-0.075] unit decrease	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	3E-11		0.0571827	[0.04-0.074] unit increase	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	4E-10		0.0540353	[0.037-0.071] unit increase	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	3E-8		0.0522218	[0.034-0.071] unit increase	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	7E-11		0.0602937	[0.042-0.078] unit increase	NR [11722792] (imputed)	N
921	chr20	44113285	44113286	rs76070947	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs76070947-C	0.953051	2E-11		0.0579868	[0.041-0.075] unit increase	NR [11722792] (imputed)	N
921	chr20	44116802	44116803	rs2018435	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs2018435-G	0.981731	1E-9		0.0945191	[0.064-0.125] unit increase	NR [11722792] (imputed)	N
921	chr20	44124522	44124523	rs11696501	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	20q13.12	WFDC2, SPINT3	rs11696501-?	0.19	9E-7				Illumina [448293]	N
921	chr20	44132805	44132806	rs117459421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs117459421-C	0.981411	2E-12		0.107803	[0.078-0.138] unit decrease	NR [11722792] (imputed)	N
921	chr20	44132805	44132806	rs117459421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs117459421-C	0.981411	1E-10		0.0979663	[0.068-0.128] unit decrease	NR [11722792] (imputed)	N
921	chr20	44132805	44132806	rs117459421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs117459421-C	0.981411	7E-14		0.114705	[0.085-0.145] unit decrease	NR [11722792] (imputed)	N
921	chr20	44132805	44132806	rs117459421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs117459421-C	0.981411	1E-13		0.113926	[0.084-0.144] unit decrease	NR [11722792] (imputed)	N
921	chr20	44132805	44132806	rs117459421	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs117459421-C	0.981411	1E-12		0.108963	[0.079-0.139] unit decrease	NR [11722792] (imputed)	N
921	chr20	44137175	44137176	rs13042504	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	SPINT3	rs13042504-A	0.48328125	3E-76	(SPINT3, 7926_13_3)	0.2880057	[0.26-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
921	chr20	44141040	44141041	rs6017591	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	SPINT3	rs6017591-C	0.541	6E-127	(Kunitz-type protease inhibitor 3, SPINT3.7926.13.3)	0.54	[0.5-0.58] unit increase	Affymetrix [10572788] (imputed)	N
921	chr20	44141330	44141331	rs6032259	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPINT3	5,367 Icelandic ancestry individuals	NA	20q13.12		rs6032259-A	0.4835	7E-118		0.278174	[0.25-0.3] unit decrease	Illumina [7506463] (imputed)	N
922	chr20	44229810	44229811	rs77909272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs77909272-C	NR	4E-9		0.032	[0.021-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
922	chr20	44269981	44269982	rs2425731	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.12	Intergenic	rs2425731-T	0.6723	6E-9	(MTAG)	0.0102	[0.0067-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
922	chr20	44279893	44279894	rs6073833	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	20q13.12	WFDC11	rs6073833-T	0.6832	8E-9		1.2027	[1.1402-1.2652]	Illumina [8567708] (imputed)	N
922	chr20	44290132	44290133	rs6065855	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	20q13.12	NR	rs6065855-?	NR	5E-6	(Native Hawaiian)	0.6644	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
923	chr20	44349616	44349617	rs186332605	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.12	NR	rs186332605-G	0.0122	2E-8	(HNRNPH3)	0.0673	NR unit increase	Illumina [1671387] (imputed)	N
923	chr20	44399536	44399537	rs73306407	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q13.12		rs73306407-T	0.114621	4E-9		0.018633	[0.012-0.025] unit decrease	Illumina [13479295] (imputed)	N
923	chr20	44401403	44401404	rs800684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.12		rs800684-G	NR	1E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
923	chr20	44405012	44405013	rs6130929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6130929-A	0.632649	4E-10				Affymetrix, Illumina [24588908] (imputed)	N
923	chr20	44425025	44425026	rs769452263	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.12	NR	rs769452263-D	0.64138	3E-10		0.013458	[0.0093-0.0176] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
923	chr20	44425026	44425027	rs11477536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.12	DNTTIP1	rs11477536-C	0.641297	1E-30		0.027151976	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
923	chr20	44425026	44425027	rs11477536	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.12	DNTTIP1	rs11477536-C	0.6417	3E-15		0.029961	[0.023-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
923	chr20	44429382	44429383	rs186635489	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Temporal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.12	DNTTIP1	rs186635489-?		4E-6				Illumina [4322238] (imputed)	N
924	chr20	44441402	44441403	rs11537645	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q13.12	UBE2C	rs11537645-?	NR	4E-12		0.031300217	[0.022-0.04] unit decrease	Illumina [27896057] (imputed)	N
924	chr20	44446099	44446100	rs3848711	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.12	NR	rs3848711-?	NR	3E-6		0.0081758	[0.0047-0.0116] unit increase	Affymetrix [805426] (imputed)	N
924	chr20	44464355	44464356	rs117191103	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs117191103-T	NR	6E-14		0.0639	[0.047-0.081] unit increase	Affymetrix [9000000] (imputed)	N
924	chr20	44464355	44464356	rs117191103	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs117191103-T	NR	2E-10		0.0564	[0.039-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
924	chr20	44503098	44503099	rs4812972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs4812972-?	NR	1E-9				NR [~ 8900000] (imputed)	N
924	chr20	44503453	44503454	rs78044163	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs78044163-G	NR	4E-9		0.0353	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
924	chr20	44507111	44507112	rs139396693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	20q13.12		rs139396693-A	0.014275	9E-9		0.0914391	[0.06-0.123] unit decrease	Illumina [13476266] (imputed)	N
924	chr20	44507535	44507536	rs4812973	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20q13.12	NR	rs4812973-?	NR	8E-6	(Native Hawaiian)	0.4476	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
924	chr20	44533617	44533618	rs56126980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs56126980-C	0.996862	2E-9		0.202497	[0.14-0.27] unit increase	NR [11722792] (imputed)	N
924	chr20	44533617	44533618	rs56126980	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs56126980-C	0.996862	4E-8		0.193079	[0.12-0.26] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	2E-23		0.0475591	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	3E-405		0.194606	[0.19-0.2] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	8E-15		0.036774	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785231	1E-362		0.187908	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	3E-417		0.197466	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	2E-11		0.0334594	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	1E-10		0.0322118	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	2E-393		0.198335	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	1E-399		0.200407	[0.19-0.21] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	9E-25		0.0516455	[0.042-0.061] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	4E-356		0.18266	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	3E-15		0.0373136	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Clinical LDL cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	3E-8		0.0278206	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	3E-38		0.0635662	[0.054-0.073] unit decrease	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	4E-355		0.181625	[0.17-0.19] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	2E-372		0.187268	[0.18-0.2] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6065904-G	0.785218	2E-339		0.175333	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
924	chr20	44534650	44534651	rs6065904	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCDC126	5,365 Icelandic ancestry individuals	NA	20q13.12		rs6065904-A	0.2375	2E-12		0.158256	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
924	chr20	44534650	44534651	rs6065904	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in small HDL	4,734 individuals	NA	20q13.12		rs6065904-A	0.228791825	3E-8		0.135487	[0.088-0.183] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44534650	44534651	rs6065904	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20q13.12	PLTP	rs6065904-?	NR	5E-13		0.0225	[0.017-0.028] unit increase	Affymetrix [5701386] (imputed)	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	8E-11	(L_HDL_CE)	0.06352546	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	5E-11	(S_HDL_PL)	0.065076746	NR unit increase	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	3E-14	(XL_HDL_L)	0.06729163	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	3E-11	(S_HDL_L)	0.060120687	NR unit increase	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	2E-12	(XL_HDL_PL)	0.07809364	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	2E-12	(XL_HDL_FC)	0.06127226	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	2E-11	(XL_HDL_C)	0.06891437	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	6E-6	(L_HDL_CE)	0.06676159	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	5E-7	(S_HDL_PL)	0.062061336	NR unit increase	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	5E-10	(XL_HDL_L)	0.09139234	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	4E-8	(XL_HDL_FC)	0.08070362	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	3E-6	(S_HDL_L)	0.069273956	NR unit increase	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	3E-13	(XL_HDL_PL)	0.08991441	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs6065904-?	NR	2E-9	(XL_HDL_C)	0.08794532	NR unit decrease	Illumina [609262]	N
924	chr20	44534650	44534651	rs6065904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	PLTP	rs6065904-A	0.208	3E-13	(Kit ligand, KITLG.9377.25.3)	0.22	[0.16-0.28] unit increase	Affymetrix [10572788] (imputed)	N
924	chr20	44534650	44534651	rs6065904	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	PLTP	rs6065904-A	0.208	1E-13	(Sarcoplasmic/endoplasmic reticulum calcium ATPase 3, ATP2A3.13510.7.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
924	chr20	44534650	44534651	rs6065904	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	20q13.12	PLTP	rs6065904-A	NR	4E-6	(CRNFORCAT-PWY_creatinine_degradation_I)	4.6366897	Z-score increase	Illumina [8100000] (imputed)	N
924	chr20	44534650	44534651	rs6065904	27315593	Lang M	2016-06-14	Eur Psychiatry	Genome-wide association study of pathological gambling.	Pathological gambling	445 European ancestry cases, 986 European ancestry controls	NA	20q13.12	PLTP	rs6065904-?	NR	1E-6	(Adjusted for PC1-5)	1.8867927	[1.45-2.44]	Illumina [595867]	N
924	chr20	44534650	44534651	rs6065904	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Lipid metabolism phenotypes	8,330 European ancestry individuals	NA	20q13.12	PLTP	rs6065904-?	NR	2E-31	(L-HDL-L/M-HDL-L)	0.22	[0.18-0.26] unit decrease	Illumina [~ 7700000] (imputed)	N
924	chr20	44534650	44534651	rs6065904	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	PLTP	rs6065904-?	NR	4E-40	(HDL.large, fasting)	0.689	[NR] unit decrease	Illumina [335603]	N
924	chr20	44538242	44538243	rs138807551	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	HDL cholesterol levels	400,754 European ancestry individuals	NA	20q13.12		rs138807551-?	NR	6E-14		0.288743	[0.21-0.37] unit decrease	NR [9800000] (imputed)	N
924	chr20	44538483	44538484	rs435306	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	20q13.12	PLTP	rs435306-T	0.2547	3E-8		0.07017989	[0.045-0.095] mg/dl decrease	Illumina [24111857] (imputed)	N
924	chr20	44538483	44538484	rs435306	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	HDL cholesterol	19,223 British ancestry individuals from 6863 families.	NA	20q13.12	NR	rs435306-T	0.254704	3E-8		0.07017989	[0.072-0.146] mg/dl decrease	Illumina [24111857] (imputed)	N
924	chr20	44544797	44544798	rs76083992	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	20q13.12	PLTP, PCIF1	rs76083992-?	NR	1E-14		0.0704	[0.052-0.088] unit increase novel	Illumina [6108953] (imputed)	N
924	chr20	44544797	44544798	rs76083992	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	20q13.12	PLTP, PCIF1	rs76083992-?	NR	4E-14		0.08508	[0.063-0.107] unit decrease novel	Illumina [6108953] (imputed)	N
924	chr20	44544946	44544947	rs58847685	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	20q13.12	HNF4A	rs58847685-?	NR	4E-29		0.0133	[0.011-0.016] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
924	chr20	44545047	44545048	rs4810479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs4810479-C	0.249822	2E-8		0.0266002	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
924	chr20	44545047	44545048	rs4810479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs4810479-C	0.249822	4E-17		0.0386953	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
924	chr20	44545047	44545048	rs4810479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	20q13.12		rs4810479-C	0.249783	4E-10		0.029142	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of LDL particles	4,348 individuals	NA	20q13.12		rs4810479-T	0.731833027	4E-10		0.151544	[0.1-0.2] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in small HDL	4,348 individuals	NA	20q13.12		rs4810479-T	0.732013376	1E-12		0.172419	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting small HDL particle concentration	4,734 individuals	NA	20q13.12		rs4810479-T	0.73131696	1E-13		0.17058	[0.13-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in small HDL	4,734 individuals	NA	20q13.12		rs4810479-T	0.73131696	4E-10		0.144784	[0.1-0.19] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in small HDL	4,734 individuals	NA	20q13.12		rs4810479-T	0.73131696	9E-10		0.14142	[0.096-0.187] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44545047	44545048	rs4810479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.12		rs4810479-T	NR	1E-18		0.0197	[0.015-0.024] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
924	chr20	44545047	44545048	rs4810479	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	20q13.12	PLTP	rs4810479-?	NR	7E-14		0.01457	[0.01-0.019] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	7E-13	(S_HDL_P)	0.057226423	NR unit increase	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	5E-16	(XL_HDL_P)	0.079680495	NR unit decrease	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	2E-12	(S_HDL_FC)	0.058674492	NR unit increase	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	5E-10	(S_HDL_P)	0.07834218	NR unit increase	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	3E-7	(S_HDL_FC)	0.07657967	NR unit increase	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PLTP	rs4810479-?	NR	3E-11	(XL_HDL_P)	0.08153009	NR unit decrease	Illumina [609262]	N
924	chr20	44545047	44545048	rs4810479	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	20q13.12	NR	rs4810479-T	0.7028	8E-34				Affymetrix, Illumina [at least 2500000] (imputed)	N
924	chr20	44545047	44545048	rs4810479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q13.12		rs4810479-?	NR	2E-10				NR [~ 8900000] (imputed)	N
924	chr20	44545047	44545048	rs4810479	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs4810479-C	NR	1E-16		0.036	unit increase	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44545047	44545048	rs4810479	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs4810479-C	0.256	4E-17	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44545047	44545048	rs4810479	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs4810479-C	NR	8E-24		0.039	unit decrease	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44545047	44545048	rs4810479	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs4810479-C	0.256	3E-23	(EA)	0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44545047	44545048	rs4810479	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	20q13.12	MMP9	rs4810479-T	0.74	3E-25		0.18	unit decrease	Illumina [5270624] (imputed)	N
924	chr20	44545047	44545048	rs4810479	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	20q13.12	PLTP	rs4810479-?	0.27	2E-42				Illumina [~ 2000000] (imputed)	N
924	chr20	44545459	44545460	rs4812975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q13.12		rs4812975-G	0.249608	9E-14		0.0356119	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
924	chr20	44545772	44545773	rs73307905	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20q13.12		rs73307905-A	0.812716	1E-19		0.0477534	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
924	chr20	44545772	44545773	rs73307905	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20q13.12		rs73307905-A	0.812716	3E-29		0.0596143	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
924	chr20	44546196	44546197	rs118024629	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	20q13.12		rs118024629-C	0.81903	3E-9		0.0314452	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
924	chr20	44546196	44546197	rs118024629	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.12	PLTP	rs118024629-C	0.818709	1E-21		0.024435	[0.019-0.029] unit decrease	Affymetrix [NR] (imputed)	N
924	chr20	44546198	44546199	rs11311341	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.12		rs11311341-T	NR	9E-13		0.0218	[0.016-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
924	chr20	44546821	44546822	rs201058905	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.12		rs201058905-A	0.185397	8E-19		0.02564537	[0.02-0.031] unit increase	Affymetrix [93095623] (imputed)	N
924	chr20	44547671	44547672	rs59329875	26366553	Danjou F	2015-09-14	Nat Genet	Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels.	Hemoglobin levels	6,602 Sardinian founder individuals	4,131 European ancestry individuals	20q13.12	PLPT, PCIF1	rs59329875-C	0.185	7E-6	(HbA2)	0.132	[0.075-0.189] percentage increase	Illumina [~ 10900000] (imputed)	N
924	chr20	44547969	44547970	rs2868346	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAPL1	5,367 Icelandic ancestry individuals	NA	20q13.12		rs2868346-C	0.2615	2E-12		0.136977	[0.099-0.175] unit increase	Illumina [7506463] (imputed)	N
924	chr20	44547969	44547970	rs2868346	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial mean diameter of HDL particles	4,348 individuals	NA	20q13.12		rs2868346-T	0.741445492	8E-13		0.175571	[0.13-0.22] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44547969	44547970	rs2868346	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q13.12	PLTP, PCIF1	rs2868346-T	0.76	9E-16		8.04	z-score increase	Affymetrix [4311822] (imputed)	N
924	chr20	44547969	44547970	rs2868346	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q13.12		rs2868346-?	NR	3E-11		0.0154253	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
924	chr20	44549475	44549476	rs6073957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.12		rs6073957-?	NR	7E-25				NR [~ 8900000] (imputed)	N
924	chr20	44551599	44551600	rs12185776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.12		rs12185776-G	NR	1E-16		0.0252	[0.019-0.031] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-33		0.059132	[0.05-0.069] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	9E-37		0.0627556	[0.053-0.072] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801259	4E-25		0.0533656	[0.043-0.063] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	6E-129		0.117802	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-15		0.0398302	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-21		0.0470305	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	4E-15		0.0394945	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	9E-12		0.0345174	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-26		0.0536673	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	6E-20		0.045572	[0.036-0.055] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-21		0.0487067	[0.039-0.059] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-12		0.0362672	[0.026-0.046] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-41		0.0699226	[0.06-0.08] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-19		0.045358	[0.036-0.055] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-9		0.030487	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	4E-14		0.0390392	[0.029-0.049] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-37		0.0596848	[0.051-0.069] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801255	2E-25		0.0500824	[0.041-0.06] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801255	9E-27		0.0533143	[0.044-0.063] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801255	2E-30		0.0569452	[0.047-0.067] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801255	1E-21		0.0474619	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-26		0.0548781	[0.045-0.065] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	5E-9		0.0287588	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801259	4E-102		0.107851	[0.098-0.118] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-15		0.0399378	[0.03-0.05] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-11		0.0346423	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	6E-52		0.0786678	[0.068-0.089] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	8E-32		0.0586703	[0.049-0.068] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-226		0.14625	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-9		0.0302332	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-8		0.0283119	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-18		0.0452009	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	7E-29		0.0521938	[0.043-0.061] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	8E-57		0.073578	[0.065-0.083] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801259	2E-97		0.107448	[0.097-0.117] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-11		0.0337978	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	4E-13		0.0341663	[0.025-0.043] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-31		0.0581815	[0.048-0.068] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	4E-89		0.0918399	[0.083-0.101] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Degree of unsaturation	115,006 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801255	8E-30		0.0557578	[0.046-0.065] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-27		0.0538167	[0.044-0.064] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-22		0.0499784	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20q13.12		rs6073958-T	0.802396	1E-30		0.0602687	[0.05-0.071] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-22		0.0499158	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	8E-20		0.0470913	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	5E-20		0.0475102	[0.037-0.058] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	9E-38		0.0666334	[0.056-0.077] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-11		0.0344441	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-274		0.16202	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	7E-12		0.0343252	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	7E-13		0.0370843	[0.027-0.047] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	8E-48		0.0676417	[0.059-0.077] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	3E-24		0.0526164	[0.042-0.063] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	4E-25		0.0509906	[0.041-0.061] unit increase	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-17		0.0431124	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-13		0.0382604	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-16		0.042998	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	5E-35		0.0641149	[0.054-0.074] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	2E-20		0.0468506	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073958-T	0.801269	1E-9		0.0303453	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in very large HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.210811671	8E-9		0.155663	[0.1-0.21] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial triglycerides levels in large HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.210900863	2E-14		0.208409	[0.16-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in small HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.213055581	4E-17		0.219676	[0.17-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in very large HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.210811671	4E-14		0.203261	[0.15-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total cholesterol in small HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.213103576	3E-9		0.155084	[0.1-0.21] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial small HDL particle concentration	4,348 individuals	NA	20q13.12		rs6073958-C	0.213055581	1E-17		0.223938	[0.17-0.27] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in small HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.213055581	8E-13		0.187617	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial free cholesterol in very large HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.210811671	6E-13		0.193542	[0.14-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial cholesterol esters in very large HDL	4,348 individuals	NA	20q13.12		rs6073958-C	0.210811671	2E-14		0.205983	[0.15-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting very large HDL particle concentration	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	1E-14		0.196664	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.212573575	1E-14		0.197778	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in very large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	1E-14		0.19642	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in very large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	1E-15		0.203247	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total cholesterol in large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.212573575	5E-9		0.149859	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting phospholipid levels in very large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	4E-12		0.176662	[0.13-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in very large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	3E-14		0.193825	[0.14-0.24] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting free cholesterol in large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.212573575	2E-8		0.14364	[0.094-0.194] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in very large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.21200896	6E-16		0.205823	[0.16-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting cholesterol esters in large HDL	4,734 individuals	NA	20q13.12		rs6073958-C	0.212573575	3E-9		0.151866	[0.1-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q13.12		rs6073958-C	NR	1E-93		0.0545	[0.049-0.06] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.12		rs6073958-C	NR	2E-117		0.0616	[0.056-0.067] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
924	chr20	44551854	44551855	rs6073958	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q13.12		rs6073958-C	NR	3E-22		0.0273	[0.022-0.033] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
924	chr20	44551854	44551855	rs6073958	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q13.12	PLTP, PCIF1	rs6073958-?		3E-24		0.0541	[0.044-0.064] unit increase	Illumina [31500000] (imputed)	N
924	chr20	44551854	44551855	rs6073958	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	20q13.12	PLTP, PCIF1	rs6073958-?		2E-25		0.0626	[0.051-0.074] unit decrease	Illumina [31500000] (imputed)	N
924	chr20	44551854	44551855	rs6073958	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs6073958-T	0.8	1E-187		0.2918	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
924	chr20	44551854	44551855	rs6073958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-T	0.801324	2E-109		0.0555219	[0.051-0.06] unit decrease	Affymetrix [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-T	0.801323	3E-11		0.0174351	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-T	0.801194	7E-143		0.0608935	[0.056-0.066] unit increase	Affymetrix [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-T	0.801356	1E-59		0.0424491	[0.037-0.048] unit decrease	Affymetrix [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.12	NR	rs6073958-T	0.801378	2E-30		0.0296491	[0.025-0.035] unit increase	NR [NR]	N
924	chr20	44551854	44551855	rs6073958	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	20q13.12	PLTP	rs6073958-?	NR	2E-17		0.01764	[0.013-0.023] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
924	chr20	44551854	44551855	rs6073958	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	20q13.12	HNF4A	rs6073958-?	NR	3E-27		0.01219	[0.0098-0.0146] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
924	chr20	44551854	44551855	rs6073958	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	20q13.12	NR	rs6073958-?	NR	1E-6		0.6813227	[0.4-0.96] unit decrease	Illumina [31978362] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	9E-8	(AA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	5E-27	(EA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	5E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-43				Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	8E-44				Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	4E-9	(AA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-26	(EA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-10	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	8E-9	(EA)	0.019	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	3E-22		0.022	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-8	(Asian)	0.023	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-6	(AA)	0.028	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	7E-6	(AA)	0.031	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	6E-9	(Asian)	0.023	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-6	(EA)	0.022	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-19		0.024	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	9E-10	(AA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	8E-56				Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-45	(EA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	6E-57	(EA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	3E-7	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-11	(AA)			Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	PCIF1, PLTP	rs6073958-C	NR	1E-69				Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	9E-27		0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	3E-9	(AA)	0.019	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-15	(EA)	0.012	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	8E-20		0.01103	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	5E-9	(EA)	0.01223	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	2E-6	(Asian)	0.007836	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	20q13.12	PLTP, PCIF1	rs6073958-C	NR	1E-7	(AA)	0.02013	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
924	chr20	44551854	44551855	rs6073958	29084231	Davis JP	2017-10-30	PLoS Genet	Common, low-frequency, and rare genetic variants associated with lipoprotein subclasses and triglyceride measures in Finnish men from the METSIM study.	Mean diameter of HDL particles	8,372 Finnish ancestry males	NA	20q13.12	SYS1	rs6073958-?	NR	2E-20		0.19	unit decrease	Illumina [15144991] (imputed)	N
924	chr20	44551854	44551855	rs6073958	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-C	0.2	3E-55	(Concentration of small HDL particles)	0.2	[0.18-0.22] unit increase	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
924	chr20	44551854	44551855	rs6073958	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	20q13.12	PLTP	rs6073958-C	0.21	9E-21		0.068	[0.054-0.082] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
924	chr20	44553703	44553704	rs1810322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	20q13.12		rs1810322-A	0.059393	7E-17		0.070955	[0.054-0.088] unit increase	Illumina [13471903] (imputed)	N
924	chr20	44553703	44553704	rs1810322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	20q13.12		rs1810322-A	0.058969	2E-15		0.0795305	[0.06-0.099] unit decrease	Illumina [13465896] (imputed)	N
924	chr20	44554014	44554015	rs6065906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6065906-T	0.814143	3E-237		0.168744	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
924	chr20	44554014	44554015	rs6065906	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6065906-T	0.814143	7E-24		0.0531644	[0.043-0.064] unit increase	NR [11722792] (imputed)	N
924	chr20	44554014	44554015	rs6065906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q13.12		rs6065906-C	NR	3E-8		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
924	chr20	44554014	44554015	rs6065906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6065906-T	0.815677	6E-14				Affymetrix, Illumina [22063850] (imputed)	N
924	chr20	44554014	44554015	rs6065906	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	20q13.12		rs6065906-T	0.8174	3E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
924	chr20	44554014	44554015	rs6065906	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	20q13.12		rs6065906-T	0.8191	9E-21		0.0133	[0.011-0.016] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
924	chr20	44554014	44554015	rs6065906	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs6065906-T	NR	8E-22		0.05	unit decrease	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44554014	44554015	rs6065906	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs6065906-T	0.814	5E-19	(EA)	0.049	unit decrease	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44554014	44554015	rs6065906	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs6065906-T	NR	4E-33		0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44554014	44554015	rs6065906	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs6065906-T	0.814	2E-30	(EA)	0.057	unit increase	Affymetrix [at least 7091467] (imputed)	N
924	chr20	44554014	44554015	rs6065906	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	20q13.12	PLTP	rs6065906-T	0.802	6E-39	(Trans-ethnic initial)	0.0594	[0.051-0.068] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
924	chr20	44554014	44554015	rs6065906	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	20q13.12	PLTP, PCIF1	rs6065906-C	NR	4E-6	(CRNFORCAT-PWY_creatinine_degradation_I)	4.626108	Z-score increase	Illumina [8100000] (imputed)	N
924	chr20	44554014	44554015	rs6065906	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	20q13.12	PLTP	rs6065906-T	NR	5E-29				NR [2501543] (imputed)	N
924	chr20	44554014	44554015	rs6065906	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	PLTP	rs6065906-C	0.19	2E-34		0.053	[NR] mg/dL increase	NR [NR] (imputed)	N
924	chr20	44554014	44554015	rs6065906	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	20q13.12	PLTP	rs6065906-C	0.19	5E-40		0.059	[NR] unit decrease	NR [NR] (imputed)	N
924	chr20	44554014	44554015	rs6065906	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	20q13.12	PLTP	rs6065906-C	0.24	5E-18		3.32	[2.5-4.14] mg/dL increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
924	chr20	44554014	44554015	rs6065906	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	20q13.12	PLTP	rs6065906-C	0.18	2E-22		0.93	[0.73-1.13] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
924	chr20	44554014	44554015	rs6065906	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	PLTP	rs6065906-?	NR	8E-37	(HDL.mean.size, fasting)	0.087	[NR] unit decrease	Illumina [335603]	N
924	chr20	44554014	44554015	rs6065906	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	PLTP	rs6065906-?	NR	3E-49	(HDL.large, whole)	0.693	[NR] unit decrease	Illumina [335603]	N
924	chr20	44554014	44554015	rs6065906	19936222	Chasman DI	2009-11-20	PLoS Genet	Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.	Lipid metabolism phenotypes	Up to 17,296 European ancestry female individuals	Up to 2,700 individuals, Up to 2,000 European ancestry cardiovascular heart disease cases and controls	20q13.12	PLTP	rs6065906-?	NR	1E-45	(HDL.mean.size, whole)	0.083	[NR] unit decrease	Illumina [335603]	N
924	chr20	44557215	44557215	rs562306828	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.12	intergenic	rs562306828-?	0.7873	1E-33		0.0398	[0.033-0.046] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
924	chr20	44557232	44557232	rs61188026	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	20q13.12	NR	rs61188026-?	NR	9E-10	(Stem cell factor)	0.384384	[0.26-0.51] unit increase	Illumina [11901634] (imputed)	N
924	chr20	44557473	44557474	rs111602331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs111602331-T	0.81353	2E-14		0.0398981	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
924	chr20	44557473	44557474	rs111602331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs111602331-T	0.81353	2E-13		0.0381962	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
924	chr20	44557473	44557474	rs111602331	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs111602331-T	0.81353	3E-18		0.0453094	[0.035-0.055] unit increase	NR [11722792] (imputed)	N
924	chr20	44557473	44557474	rs111602331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial very large HDL particle concentration	4,348 individuals	NA	20q13.12		rs111602331-C	0.194589583	5E-13		0.20104	[0.15-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44557473	44557474	rs111602331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial total lipids in very large HDL	4,348 individuals	NA	20q13.12		rs111602331-C	0.194589583	5E-13		0.200881	[0.15-0.26] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44557473	44557474	rs111602331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Postprandial phospholipid levels in very large HDL	4,348 individuals	NA	20q13.12		rs111602331-C	0.194589583	2E-10		0.176582	[0.12-0.23] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44557473	44557474	rs111602331	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting mean diameter of HDL particles	4,734 individuals	NA	20q13.12		rs111602331-C	0.197300591	2E-14		0.196752	[0.15-0.25] mmol/l decrease	Illumina [7701709] (imputed)	N
924	chr20	44557614	44557615	rs112180569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs112180569-G	0.813714	7E-36		0.0647032	[0.055-0.075] unit increase	NR [11722792] (imputed)	N
924	chr20	44557614	44557615	rs112180569	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs112180569-G	0.813714	6E-80		0.10086	[0.09-0.111] unit increase	NR [11722792] (imputed)	N
924	chr20	44557614	44557615	rs112180569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.12		rs112180569-C	0.186595	3E-34		0.035012968	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
924	chr20	44557614	44557615	rs112180569	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.12		rs112180569-C	0.186562	1E-27		0.031735	[0.027-0.037] unit increase	Affymetrix [93095623] (imputed)	N
924	chr20	44557614	44557615	rs112180569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs112180569-C	0.151037	5E-38				Affymetrix, Illumina [24246363] (imputed)	N
924	chr20	44557614	44557615	rs112180569	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.12	NR	rs112180569-C	0.185401	2E-40		0.03116	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20q13.12		rs139953093-G	0.814831	4E-62		0.0892163	[0.079-0.1] unit increase	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813683	1E-235		0.173253	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	20q13.12		rs139953093-G	0.814831	3E-145		0.136663	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813683	2E-190		0.154763	[0.14-0.17] unit decrease	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813734	9E-81		0.0978465	[0.088-0.108] unit increase	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813683	2E-20		0.0489288	[0.039-0.059] unit increase	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813683	7E-99		0.109722	[0.1-0.12] unit decrease	NR [11722792] (imputed)	N
924	chr20	44559747	44559748	rs139953093	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs139953093-G	0.813683	1E-162		0.137307	[0.13-0.15] unit increase	NR [11722792] (imputed)	N
924	chr20	44560819	44560820	rs58952297	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs58952297-C	0.813636	1E-273		0.187678	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
924	chr20	44560819	44560820	rs58952297	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs58952297-C	0.813636	2E-289		0.193332	[0.18-0.2] unit decrease	NR [11722792] (imputed)	N
924	chr20	44560819	44560820	rs58952297	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs58952297-C	0.813636	3E-249		0.178727	[0.17-0.19] unit decrease	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813742	8E-182		0.1434	[0.13-0.15] unit decrease	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	6E-259		0.160003	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Sphingomyelin levels	115,006 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813709	6E-21		0.0466236	[0.037-0.056] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	1E-67		0.0889821	[0.079-0.099] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813742	3E-275		0.166601	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	8E-185		0.145839	[0.14-0.16] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	5E-145		0.120668	[0.11-0.13] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	3E-312		0.175697	[0.17-0.18] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	7E-265		0.161635	[0.15-0.17] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813742	1E-41		0.0714625	[0.061-0.082] unit decrease	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	1E-47		0.0742365	[0.064-0.084] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813742	1E-236		0.165803	[0.16-0.18] unit decrease	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	7E-253		0.169442	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	3E-38		0.0664952	[0.056-0.077] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs1057208-C	0.813723	3E-285		0.168784	[0.16-0.18] unit increase	NR [11722792] (imputed)	N
924	chr20	44563006	44563007	rs1057208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs1057208-T	0.145471	6E-20				Affymetrix, Illumina [24332387] (imputed)	N
924	chr20	44563216	44563217	rs77617917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs77617917-A	NR	6E-32		0.0523	[0.044-0.061] unit increase	Affymetrix [9000000] (imputed)	N
924	chr20	44563216	44563217	rs77617917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs77617917-A	NR	3E-49		0.0686	[0.06-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
924	chr20	44563216	44563217	rs77617917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	20q13.12	NR	rs77617917-A	NR	2E-10		0.0284	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
924	chr20	44563216	44563217	rs77617917	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q13.12	NR	rs77617917-A	NR	4E-20		0.041	[0.032-0.05] unit increase	Affymetrix [9000000] (imputed)	N
925	chr20	44564681	44564682	rs3848715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.12	Intergenic	rs3848715-A	0.5194	2E-13	(MTAG)	0.0131	[0.0096-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr20	44564681	44564682	rs3848715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.12	Intergenic	rs3848715-A	0.5187	3E-13	(MTAG)	0.0121	[0.0088-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr20	44564681	44564682	rs3848715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.12		rs3848715-A	0.5129	1E-8		0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
925	chr20	44564681	44564682	rs3848715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.12	Intergenic	rs3848715-A	0.5129	1E-10	(MTAG)	0.0084	[0.0059-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr20	44569929	44569930	rs6065908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065908-C	0.813878	3E-93		0.108652	[0.098-0.119] unit increase	NR [11722792] (imputed)	N
925	chr20	44569929	44569930	rs6065908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065908-C	0.813878	5E-29		0.0593032	[0.049-0.07] unit decrease	NR [11722792] (imputed)	N
925	chr20	44569929	44569930	rs6065908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065908-C	0.813878	3E-59		0.0860745	[0.076-0.096] unit decrease	NR [11722792] (imputed)	N
925	chr20	44569929	44569930	rs6065908	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	20q13.12		rs6065908-C	0.813878	1E-57		0.0852901	[0.075-0.096] unit decrease	NR [11722792] (imputed)	N
925	chr20	44569929	44569930	rs6065908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.12	PCIF1	rs6065908-T	0.186609	1E-48		0.042208567	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	4E-12	(L_HDL_PL)	0.06320102	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	4E-11	(L_HDL_P)	0.06842507	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	3E-14	(HDL_D)	0.07777936	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	1E-10	(XL_HDL_CE)	0.07804043	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	8E-8	(XL_HDL_CE)	0.078949906	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	7E-8	(L_HDL_P)	0.06692289	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	7E-10	(HDL_D)	0.07612515	NR unit decrease	Illumina [609262]	N
925	chr20	44569929	44569930	rs6065908	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	20q13.12	PCIF1	rs6065908-?	NR	1E-7	(L_HDL_PL)	0.06547658	NR unit decrease	Illumina [609262]	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q13.12		rs6073966-C	0.831054	4E-14		0.0404895	[0.03-0.051] unit decrease	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830981	1E-12		0.0378799	[0.027-0.048] unit decrease	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830981	3E-8		0.0297108	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830981	2E-22		0.0516248	[0.041-0.062] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830981	5E-13		0.0386323	[0.028-0.049] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830974	1E-16		0.0436631	[0.033-0.054] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q13.12		rs6073966-C	0.831054	1E-11		0.0359344	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	20q13.12		rs6073966-C	0.830981	4E-8		0.0293503	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
925	chr20	44570191	44570192	rs6073966	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting triglycerides levels in very large HDL	4,734 individuals	NA	20q13.12		rs6073966-T	0.183064685	7E-10		0.166866	[0.11-0.22] mmol/l decrease	Illumina [7701709] (imputed)	N
925	chr20	44570191	44570192	rs6073966	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting total lipids in small HDL	4,734 individuals	NA	20q13.12		rs6073966-T	0.184059509	5E-13		0.1916	[0.14-0.24] mmol/l increase	Illumina [7701709] (imputed)	N
925	chr20	44570191	44570192	rs6073966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.12	PCIF1	rs6073966-T	0.169622	3E-16		0.024119074	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr20	44570191	44570192	rs6073966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.12	PCIF1	rs6073966-T	0.169555	4E-21		0.027764544	[0.022-0.034] unit increase	Affymetrix [93095623] (imputed)	N
925	chr20	44570191	44570192	rs6073966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.12	NR	rs6073966-T	0.167908	3E-22		0.024136	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
925	chr20	44570191	44570192	rs6073966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs6073966-T	0.133815	2E-26				Affymetrix, Illumina [20825802] (imputed)	N
925	chr20	44570191	44570192	rs6073966	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.12	NR	rs6073966-T	0.169064	4E-29		0.028814	[0.024-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
925	chr20	44570191	44570192	rs6073966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q13.12	PCIF1	rs6073966-T	0.1685	2E-13		0.03466183	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
925	chr20	44570191	44570192	rs6073966	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q13.12	PCIF1	rs6073966-T	0.1685	6E-13		0.03408914	[0.025-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
925	chr20	44570762	44570763	rs6017713	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.12	Intergenic	rs6017713-T	0.4839	9E-12		0.0133	[0.0094-0.0172] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
925	chr20	44571316	44571317	rs58749629	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	20q13.12	ZNF335, PCIF1, MMP9	rs58749629-A	NR	2E-17		1.223	[1.168-1.281]	Affymetrix, Illumina [5363770] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-102		0.107938	[0.098-0.118] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-19		0.0464371	[0.036-0.057] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	9E-33		0.0607855	[0.051-0.071] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	4E-30		0.0584697	[0.048-0.069] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	3E-123		0.121095	[0.11-0.13] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-24		0.052481	[0.042-0.063] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	1E-47		0.0752202	[0.065-0.085] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	3E-37		0.0664088	[0.056-0.077] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-40		0.0692269	[0.059-0.079] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	1E-15		0.0408922	[0.031-0.051] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	3E-39		0.068197	[0.058-0.078] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	1E-18		0.045268	[0.035-0.055] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	20q13.12		rs7679-T	0.813584	5E-29		0.0569608	[0.047-0.067] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	1E-29		0.0572492	[0.047-0.067] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	20q13.12		rs7679-T	0.813584	2E-12		0.0367199	[0.026-0.047] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	9E-32		0.0592196	[0.049-0.069] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-23		0.050476	[0.041-0.06] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	5E-50		0.0750549	[0.065-0.085] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	2E-24		0.0521982	[0.042-0.062] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	4E-89		0.0997603	[0.09-0.11] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	4E-85		0.098049	[0.088-0.108] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	6E-45		0.07252	[0.062-0.083] unit increase	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	20q13.12		rs7679-T	0.813594	1E-41		0.0669761	[0.057-0.077] unit decrease	NR [11722792] (imputed)	N
925	chr20	44576501	44576502	rs7679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q13.12	PCIF1	rs7679-C	0.186699	7E-15		0.022182703	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
925	chr20	44576501	44576502	rs7679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q13.12	NR	rs7679-T	0.814072	6E-16		0.019708	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
925	chr20	44576501	44576502	rs7679	31566214	Kulminski AM	2019-09-30	J Gerontol A Biol Sci Med Sci	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids.	High density lipoprotein cholesterol levels	29,902 European ancestry individuals	NA	20q13.12		rs7679-C	0.19	7E-12		1.03	[0.74-1.32] unit decrease	Affymetrix, Illumina [up to 2500000] (imputed)	N
925	chr20	44576501	44576502	rs7679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.12		rs7679-?	NR	7E-12				NR [~ 8900000] (imputed)	N
925	chr20	44576501	44576502	rs7679	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	20q13.12	PCIF1	rs7679-C	NR	2E-6	(CRNFORCAT-PWY_creatinine_degradation_I)	4.76667	Z-score increase	Illumina [8100000] (imputed)	N
925	chr20	44576501	44576502	rs7679	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	Triglycerides	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	PLTP	rs7679-C	0.19	7E-11		0.07	[0.03-0.11] s.d. increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
925	chr20	44576501	44576502	rs7679	19060906	Kathiresan S	2008-12-07	Nat Genet	Common variants at 30 loci contribute to polygenic dyslipidemia.	HDL cholesterol	19,840 European ancestry individuals	Up to 20,623 European ancestry individuals	20q13.12	PLTP	rs7679-C	0.19	4E-9		0.07	[0.03-0.11] s.d. decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
925	chr20	44576981	44576982	rs6130975	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	20q13.12	PLTP	rs6130975-A	0.06	6E-10	(BMI adjusted)	0.097	[0.066-0.128] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
925	chr20	44576981	44576982	rs6130975	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	20q13.12	PLTP	rs6130975-A	0.06	2E-8	(BMI unadjusted)	0.116	[0.077-0.155] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
925	chr20	44578960	44578961	rs3746503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs3746503-G	NR	3E-10		0.0235	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr20	44578960	44578961	rs3746503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs3746503-G	NR	2E-17		0.0333	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
925	chr20	44581452	44581453	rs6124760	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	20q13.12	PLTP	rs6124760-C	0.94	2E-9	(Asian initial, BMI unadjusted)	0.104	[0.071-0.137] unit increase	Affymetrix, Illumina [~ 1900000] (imputed)	N
925	chr20	44582434	44582435	rs41280276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs41280276-T	NR	4E-9		0.0261	[0.017-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr20	44582434	44582435	rs41280276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs41280276-T	NR	9E-11		0.0302	[0.021-0.039] unit increase	Affymetrix [9000000] (imputed)	N
925	chr20	44585419	44585420	rs4465830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.12		rs4465830-G	NR	3E-13		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
925	chr20	44585419	44585420	rs4465830	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	20q13.12		rs4465830-A	0.8194	5E-11		0.0212	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
925	chr20	44585419	44585420	rs4465830	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	20q13.12		rs4465830-A	0.8216	4E-20		0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
925	chr20	44585419	44585420	rs4465830	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	20q13.12	ZNF335, PLTP	rs4465830-A	NR	2E-24				NR [25015711] (imputed)	N
925	chr20	44586022	44586023	rs3827066	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	20q13.12	PCIF1, ZNF335	rs3827066-T	0.1437	4E-9		0.0424	[0.028-0.057] unit increase	Affymetrix [at least 7947838] (imputed)	N
925	chr20	44586022	44586023	rs3827066	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	20q13.12	PCIF1, ZNF335	rs3827066-T	0.1437	3E-9		0.0467	[0.031-0.062] unit increase	NR [8041861] (imputed)	N
925	chr20	44589969	44589970	rs6073971	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	20q13.12		rs6073971-C	0.81384	2E-19		0.0461226	[0.036-0.056] unit increase	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073972-C	0.813871	1E-45		0.0710685	[0.061-0.081] unit decrease	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073972-C	0.813871	1E-13		0.037838	[0.028-0.048] unit decrease	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073972-C	0.813871	7E-54		0.0781313	[0.068-0.088] unit increase	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073972-C	0.813871	1E-49		0.0737929	[0.064-0.084] unit increase	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.12		rs6073972-C	0.813871	6E-52		0.0757538	[0.066-0.086] unit increase	NR [11722792] (imputed)	N
925	chr20	44590297	44590298	rs6073972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.12		rs6073972-?	NR	3E-19				NR [~ 8900000] (imputed)	N
925	chr20	44590297	44590298	rs6073972	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	20q13.12	PLTP	rs6073972-C	0.81	9E-18		0.065	[0.049-0.081] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
925	chr20	44595648	44595649	rs3092073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.12	Intergenic	rs3092073-A	0.4497	2E-10	(MTAG)	0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr20	44595648	44595649	rs3092073	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.12	ZNF335	rs3092073-A	NR	1E-8		5.719	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
925	chr20	44595648	44595649	rs3092073	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.12	ZNF335	rs3092073-A	NR	3E-8		0.016984068	[0.011-0.023] unit decrease	Affymetrix [NR]	N
925	chr20	44596206	44596207	rs6032606	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	20q13.12	ZNF335	rs6032606-?	NR	5E-8		0.2274	unit decrease	Illumina [up to 143074]	N
925	chr20	44608649	44608650	rs6073976	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	20q13.12	SLC12A5, MMP9	rs6073976-?	NR	1E-7	(EA)			Illumina [126270]	N
925	chr20	44608900	44608901	rs8124182	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	20q13.12	ZNF335	rs8124182-A	0.154999	6E-7		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
925	chr20	44608900	44608901	rs8124182	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q13.12	ZNF335, MMP9	rs8124182-?	NR	7E-11		0.0447465	[0.031-0.058] unit increase	Illumina [4804024] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	1E-13		0.0462732	[0.034-0.058] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs6032614-G	0.100169	9E-13		0.0453338	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	4E-14		0.047053	[0.035-0.059] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	6E-14		0.048251	[0.036-0.061] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	1E-14		0.0497463	[0.037-0.062] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	1E-11		0.042126	[0.03-0.054] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	1E-12		0.0438991	[0.032-0.056] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	4E-13		0.0452883	[0.033-0.058] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6032614-G	0.10017	2E-10		0.0391895	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
925	chr20	44609594	44609595	rs6032614	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (lipoprotein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	20q13.12	NR	rs6032614-?	NR	2E-13	(Total lipids in small HDL, conditioned)	0.1017956	[0.075-0.129] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
925	chr20	44614991	44614995	rs142450006	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	20q13.12	MMP9	rs142450006-?	NR	2E-10	(EA)	1.1764705		Illumina [12023830] (imputed)	N
925	chr20	44630652	44630653	rs6073984	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.12	NR	rs6073984-?	NR	2E-6		0.0084168	[0.005-0.0119] unit decrease	Affymetrix [805426] (imputed)	N
925	chr20	44631295	44631296	rs8121146	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q13.12	MMP9	rs8121146-C	0.46198	3E-9		0.0110673	[0.0074-0.0147] unit increase	NR [13737936] (imputed)	N
925	chr20	44636494	44636495	rs3918279	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q13.12		rs3918279-?	NR	6E-7		1.17145	[1.11-1.23]	NR [688737]	N
925	chr20	44639510	44639511	rs3918253	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.12	MMP9	rs3918253-C	0.417903	1E-26		0.0024335	[0.002-0.0029] unit decrease	Affymetrix [13995440] (imputed)	N
925	chr20	44639904	44639905	rs41529445	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Mild influenza (H1N1) infection	107 European ancestry mild cases, 549 European ancestry population controls	NA	20q13.12	MMP9	rs41529445-?	0.0	2E-8				Affymetrix [547296]	N
925	chr20	44642405	44642406	rs2250889	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.12	MMP9	rs2250889-C	0.953	2E-26	(Matrix metalloproteinase-9, MMP9.2579.17.5)	0.62	[0.5-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
925	chr20	44650317	44650318	rs10432735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs10432735-T	NR	2E-28		0.0374	[0.031-0.044] unit increase	Affymetrix [9000000] (imputed)	N
925	chr20	44650317	44650318	rs10432735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs10432735-T	NR	2E-33		0.0425	[0.036-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
925	chr20	44650317	44650318	rs10432735	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	20q13.12	NR	rs10432735-T	NR	5E-23		0.0334	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
925	chr20	44653548	44653549	rs6094239	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP9	5,357 Icelandic ancestry individuals	NA	20q13.12		rs6094239-G	0.04535	5E-28		0.486203	[0.4-0.57] unit increase	Illumina [7506463] (imputed)	N
925	chr20	44653548	44653549	rs6094239	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.12	MMP9	rs6094239-A	0.95859375	2E-14	(MMP9, 2579_17_5)	0.4701349	[0.35-0.59] unit decrease	Illumina [> 1000000] (imputed)	N
925	chr20	44661944	44661945	rs77547060	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.12	SLC12A5	rs77547060-A	0.91611	2E-13		0.00327574	[0.0024-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
925	chr20	44661944	44661945	rs77547060	33589590	Marshe VS	2021-02-15	Transl Psychiatry	Genome-wide analysis suggests the importance of vascular processes and neuroinflammation in late-life antidepressant response.	Response to antidepressants (symptom improvement)	307 European ancestry individuals	NA	20q13.12	SLC12A5	rs77547060-C	NR	2E-6		25.59	[15.25-35.93] unit decrease	Illumina [4471676] (imputed)	N
925	chr20	44663474	44663475	rs11699481	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	20q13.12	SLC12A5	rs11699481-T	0.547	1E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
925	chr20	44668007	44668008	rs6073995	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	20q13.12	NR	rs6073995-G	0.648095760660141	5E-8		0.006525342	[0.0042-0.0089] unit increase	NR [NR]	N
925	chr20	44668210	44668211	rs6124765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.12	SLC12A5	rs6124765-T	0.258696	2E-9		0.0153196305	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
925	chr20	44668400	44668401	rs57236847	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	20q13.12	SLC12A5	rs57236847-C	0.6029	4E-9		1.0272651		Affymetrix [11880941] (imputed)	N
925	chr20	44680852	44680853	rs12624433	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	20q13.12	NR	rs12624433-A	NR	5E-10		6.219	NR z score increase	NR [NR]	N
925	chr20	44680852	44680853	rs12624433	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	20q13.12	NR	rs12624433-A	0.2584	2E-14		1.019	[1.014-1.024]	NR [8098588] (imputed)	N
925	chr20	44680852	44680853	rs12624433	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	20q13.12	NR	rs12624433-A	0.257043985058978	2E-11		0.012529465	[0.0089-0.0162] unit increase	NR [NR]	N
925	chr20	44680852	44680853	rs12624433	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	20q13.12	NR	rs12624433-A	0.257043985058978	2E-11		0.008000939	[0.0057-0.0103] unit increase	NR [NR]	N
925	chr20	44680852	44680853	rs12624433	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.12	Intergenic	rs12624433-A	0.2657	4E-10	(MTAG)	0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
925	chr20	44692597	44692598	rs13037326	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	20q13.12	NR	rs13037326-T	0.2597	2E-12		0.03317893	[0.024-0.042] unit increase	NR [NR]	N
925	chr20	44693946	44693947	rs2903908	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20q13.12		rs2903908-?	NR	4E-8				NR [NR]	N
926	chr20	44700165	44700166	rs6074012	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	20q13.12	NR	rs6074012-T	NR	6E-9		5.815	NR z score increase	NR [NR]	N
926	chr20	44700165	44700166	rs6074012	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q13.12	NR	rs6074012-T	NR	3E-9		5.915	z score increase	Affymetrix [10847151] (imputed)	N
926	chr20	44702119	44702120	rs2425752	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	20q13.12	NCOA5	rs2425752-?	NR	1E-7		1.0957704		Illumina [~ 460000] (imputed)	N
926	chr20	44702119	44702120	rs2425752	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Follicular lymphoma or multiple sclerosis	2,686 European ancestry follicular lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 25,256 European ancestry controls	NA	20q13.12	NCOA5	rs2425752-?	NR	1E-7		1.0899183		Illumina [~ 460000] (imputed)	N
926	chr20	44702119	44702120	rs2425752	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or multiple sclerosis	3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls	NA	20q13.12	NCOA5	rs2425752-?	NR	5E-9		1.098901		Illumina [~ 460000] (imputed)	N
926	chr20	44702119	44702120	rs2425752	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	20q13.12		rs2425752-?	NR	2E-9				NR [~ 8900000] (imputed)	N
926	chr20	44702119	44702120	rs2425752	30194254	Sud A	2018-09-07	Blood	Genome-wide association study implicates immune dysfunction in the development of Hodgkin lymphoma.	Hodgkin's lymphoma	5,325 European ancestry cases, 22,425 European ancestry controls	NA	20q13.12	NCOA5, CD40	rs2425752-T	0.23	2E-8		1.15	[1.10-1.21]	Illumina [> 10000000] (imputed)	N
926	chr20	44702119	44702120	rs2425752	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q13.12	NR	rs2425752-T	NR	5E-13		7.212	z score increase	Affymetrix [10847151] (imputed)	N
926	chr20	44702119	44702120	rs2425752	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.12	NCOA5, CD40	rs2425752-A	NR	5E-10		1.11	[1.1-1.13]	Illumina [465434]	N
926	chr20	44709538	44709539	rs6074013	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	20q13.12	NR	rs6074013-?	NR	1E-9		0.01402	[0.0095-0.0186] unit increase	Affymetrix [10847151] (imputed)	N
926	chr20	44712174	44712175	rs6074015	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.12		rs6074015-?	NR	1E-8				NR [~ 8900000] (imputed)	N
926	chr20	44721655	44721656	rs4578918	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	20q13.12	NR	rs4578918-T	NR	1E-11		0.01792	[0.013-0.023] unit increase	Affymetrix [10847151] (imputed)	N
926	chr20	44721655	44721656	rs4578918	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	20q13.12	PLTP	rs4578918-T	0.256817	1E-10		6.44	z score increase	NR [10847151] (imputed)	N
926	chr20	44721655	44721656	rs4578918	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	20q13.12	PLTP	rs4578918-T	0.256817	1E-9		6.06	z score increase	NR [10847151] (imputed)	N
926	chr20	44724304	44724305	rs6131010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hyperthyroidism	3,557 European ancestry cases, 456,942 European ancestry controls, 994 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	20q13.12		rs6131010-G	NR	4E-8		0.1306	[0.084-0.177] unit increase	Affymetrix, Illumina [25841580] (imputed)	N
926	chr20	44724304	44724305	rs6131010	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20q13.12	NR	rs6131010-G	0.736760557817369	1E-11		0.007101281	[0.0051-0.0091] unit decrease	NR [NR]	N
926	chr20	44724304	44724305	rs6131010	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	20q13.12	NR	rs6131010-G	0.7402	7E-8		0.0073	[0.0048-0.0098] unit decrease	NR [7666894] (imputed)	N
926	chr20	44728660	44728661	rs6131012	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.12	NCOA5	rs6131012-A	0.603185	1E-8		0.011299	[0.0074-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
926	chr20	44729408	44729409	rs6104460	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 13, vertical position of alar curvature relative to upper lip)	2,187 European ancestry individuals	NA	20q13.12	NR	rs6104460-T	0.05342	2E-6		0.3145	[0.19-0.44] unit increase	Illumina [10677593] (imputed)	N
926	chr20	44730244	44730245	rs6032660	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Unswitched memory B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs6032660-A	0.6357900000000001	7E-9		0.1525	[0.1-0.2] unit decrease	Illumina [18238287] (imputed)	N
926	chr20	44732088	44732089	rs2024568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.12		rs2024568-T	0.2535	2E-9		0.0097	[0.0066-0.0128] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
926	chr20	44732088	44732089	rs2024568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.12	Intergenic	rs2024568-T	0.2535	6E-13	(MTAG)	0.0108	[0.0079-0.0137] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
926	chr20	44732088	44732089	rs2024568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.12	Intergenic	rs2024568-T	0.2464	4E-9	(MTAG)	0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
926	chr20	44734309	44734310	rs6032662	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.12	NCOA5	rs6032662-C	NR	5E-19		1.0995	NR	Affymetrix, Illumina [8278136] (imputed)	N
926	chr20	44734309	44734310	rs6032662	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	20q13.12	CD40	rs6032662-?	0.76	1E-9		1.1676786		Illumina [129464] (imputed)	N
926	chr20	44735853	44735854	rs6065926	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	CD40 plasma levels	400 French ancestry individuals	NA	20q13.12		rs6065926-G	NR	1E-10		0.15	[0.11-0.19] ng/mL decrease	Illumina [5201092] (imputed)	N
926	chr20	44736795	44736796	rs6074021	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q13.12	NR	rs6074021-C	NR	6E-9		5.807	z score increase	Affymetrix [10847151] (imputed)	N
926	chr20	44737382	44737383	rs6131014	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	20q13.12	NCOA5, CD40	rs6131014-?	NR	1E-7		1.1363636	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
926	chr20	44739418	44739419	rs6032664	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	20q13.12	NCOA5, CD40	rs6032664-A	0.26	7E-12		1.07	[1.06-1.08]	Illumina [at least 560000] (imputed)	N
926	chr20	44739418	44739419	rs6032664	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	20q13.12	NCOA5, CD40	rs6032664-?	NR	7E-12		1.0649627	[1.05-1.08]	Illumina [13757430] (imputed)	N
926	chr20	44740195	44740196	rs6074022	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.12	NR	rs6074022-G	0.2503	8E-11	(EA)	1.0770855	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
926	chr20	44740195	44740196	rs6074022	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.12	NR	rs6074022-G	0.2503	3E-12	(EA)	1.1011126	[1.07-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
926	chr20	44740195	44740196	rs6074022	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	20q13.12	CD40	rs6074022-C	0.27	5E-6		1.15	[NR]	Affymetrix, Illumina [2529394]	N
926	chr20	44740195	44740196	rs6074022	19525955	Bahlo M	2009-06-14	Nat Genet	Genome-wide association study identifies new multiple sclerosis susceptibility loci on chromosomes 12 and 20.	Multiple sclerosis	1,618 European ancestry cases, 3,413 European ancestry controls	2,256 European ancestry cases, 2,310 European ancestry controls	20q13.12	CD40	rs6074022-G	0.25	1E-7		1.2	[NR]	Illumina [302098]	N
926	chr20	44742063	44742064	rs1569723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	20q13.12		rs1569723-A	0.614881717	1E-8		0.16323031	[0.11-0.22] unit increase	Illumina [13429311] (imputed)	N
926	chr20	44742063	44742064	rs1569723	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	20q13.12		rs1569723-A	NR	2E-12		0.1641	[0.12-0.21] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
926	chr20	44742063	44742064	rs1569723	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	20q13.12		rs1569723-A	0.614705531	4E-9		1.2041003	[1.131835944-1.280978518]	Illumina [8919992] (imputed)	N
926	chr20	44742063	44742064	rs1569723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.12	Intergenic	rs1569723-A	0.743	3E-14	(MTAG)	0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
926	chr20	44742063	44742064	rs1569723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q13.12	Intergenic	rs1569723-C	0.257	9E-9		0.0149	[0.0098-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
926	chr20	44742063	44742064	rs1569723	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	20q13.12	CD40	rs1569723-C	0.28	2E-121		0.39	unit decrease	Illumina [5270624] (imputed)	N
926	chr20	44742063	44742064	rs1569723	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q13.12	CD40, SLC12A5, NCOA5	rs1569723-?		2E-6				Illumina [9725440] (imputed)	N
926	chr20	44742063	44742064	rs1569723	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	20q13.12	CD40, SLC12A5, NCOA5	rs1569723-?		2E-7				Illumina [9560910] (imputed)	N
926	chr20	44742063	44742064	rs1569723	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.12	CD40, MMP9, PLTP	rs1569723-C	0.259	1E-13		1.091	[1.056-1.126]	Affymetrix, Illumina [1230000] (imputed)	N
926	chr20	44742063	44742064	rs1569723	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	20q13.12	CD40	rs1569723-A	0.5480	6E-9		1.415	[1.256-1.594]	Affymetrix [716935]	N
926	chr20	44746981	44746982	rs1883832	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	20q13.12		rs1883832-?	NR	9E-15		0.064	NR unit decrease	NR [5890016] (imputed)	N
926	chr20	44746981	44746982	rs1883832	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	20q13.12		rs1883832-T	NR	1E-16		0.9	[0.88-0.92]	NR [13810676] (imputed)	N
926	chr20	44746981	44746982	rs1883832	33106546	Johnson TA	2020-10-26	J Hum Genet	Association of an IGHV3-66 gene variant with Kawasaki disease.	Kawasaki disease	1,276 East Asian ancestry cases, 5,086 East Asian ancestry controls	2,152 East Asian ancestry cases, 2,751 East Asian ancestry controls	20q13.12	CD40	rs1883832-C	NR	2E-13		1.28	[1.20-1.36]	Affymetrix, Illumina [6265045] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	3E-118		0.5853	[0.54-0.63] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	2E-87		0.5071	[0.46-0.56] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	6E-147		0.6404	[0.59-0.69] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	4E-75		0.4707	[0.42-0.52] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38+ B cell	3,642 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.6322	4E-8		0.1431	[0.092-0.194] unit decrease	Illumina [18233708] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63156	3E-83		0.4972	[0.45-0.55] unit decrease	Illumina [18238284] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	8E-120		0.5841	[0.54-0.63] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25 on IgD- CD27- B cell	3,651 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63146	3E-19		0.2306	[0.18-0.28] unit increase	Illumina [18236953] (imputed)	N
926	chr20	44746981	44746982	rs1883832	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD- CD27- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs1883832-C	0.63166	5E-13		0.1869	[0.14-0.24] unit decrease	Illumina [18238311] (imputed)	N
926	chr20	44746981	44746982	rs1883832	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.12	CD40	rs1883832-?	NR	4E-12	(subset analysis)			Illumina [130052]	N
926	chr20	44746981	44746982	rs1883832	25802187	Jiang DK	2015-04-28	Hepatology	Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B.	Chronic hepatitis B infection	2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls	6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls	20q13.12	CD40	rs1883832-T	0.37	3E-15		1.19	[1.14-1.25]	Illumina [3680900] (imputed)	N
926	chr20	44746981	44746982	rs1883832	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	20q13.12	CD40	rs1883832-G	0.75	2E-13		1.1363636	[1.1-1.18]	Illumina [133816] (imputed)	N
926	chr20	44747085	44747086	rs745307	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on monocytes	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs745307-A	0.14605	7E-96		0.715	[0.65-0.78] unit increase	Illumina [18218967] (imputed)	N
926	chr20	44747085	44747086	rs745307	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs745307-A	0.14637	5E-94		0.7089	[0.64-0.77] unit increase	Illumina [18212658] (imputed)	N
926	chr20	44747085	44747086	rs745307	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs745307-A	0.14605	2E-83		0.6636	[0.6-0.73] unit increase	Illumina [18218967] (imputed)	N
926	chr20	44747085	44747086	rs745307	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD40 on CD14+ CD16+ monocyte	3,618 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs745307-A	0.14608	4E-92		0.6978	[0.63-0.76] unit increase	Illumina [18213821] (imputed)	N
926	chr20	44747946	44747947	rs4810485	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 5 levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs4810485-T	0.26	1E-414		0.4676	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
926	chr20	44747946	44747947	rs4810485	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs4810485-G	0.63127	5E-33		0.317	[0.27-0.37] unit increase	Illumina [18238287] (imputed)	N
926	chr20	44747946	44747947	rs4810485	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs4810485-G	0.63138	7E-50		0.3898	[0.34-0.44] unit increase	Illumina [18238311] (imputed)	N
926	chr20	44747946	44747947	rs4810485	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs4810485-G	0.63127	6E-78		0.4783	[0.43-0.53] unit decrease	Illumina [18238284] (imputed)	N
926	chr20	44747946	44747947	rs4810485	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	20q13.12	NR	rs4810485-?	NR	5E-19	(CD40)	0.496525	[0.39-0.61] unit increase	Illumina [11901634] (imputed)	N
926	chr20	44747946	44747947	rs4810485	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	20q13.12	NCOA5, CD40	rs4810485-?	NR	1E-8		1.43	[1.17-1.76]	Illumina [at least 5000000] (imputed)	N
926	chr20	44747946	44747947	rs4810485	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	20q13.12	CD40	rs4810485-A	0.25	8E-16		1.11		Illumina [161311]	N
926	chr20	44747946	44747947	rs4810485	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	20q13.12	CD40	rs4810485-?	NR	9E-11				Illumina [129464] (imputed)	N
926	chr20	44747946	44747947	rs4810485	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	20q13.12	CD40	rs4810485-?	NR	2E-7				Illumina [129464] (imputed)	N
926	chr20	44747946	44747947	rs4810485	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	20q13.12	CD40	rs4810485-T	0.25	3E-9		1.18	[1.11-1.25]	Affymetrix, Illumina [~ 2716259] (imputed)	N
926	chr20	44747946	44747947	rs4810485	18794853	Raychaudhuri S	2008-09-14	Nat Genet	Common variants at CD40 and other loci confer risk of rheumatoid arthritis.	Rheumatoid arthritis	3,393 European ancestry cases, 12,460 European ancestry controls	3,929 European ancestry cases, 5,807 European ancestry controls	20q13.12	CD40	rs4810485-G	0.75	8E-9		1.15	[NR]	Affymetrix, Illumina [at least 315971] (imputed)	N
926	chr20	44749250	44749251	rs4239702	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.12		rs4239702-C	0.60025	2E-27		0.2841	[0.23-0.33] unit increase	Illumina [18238287] (imputed)	N
926	chr20	44749250	44749251	rs4239702	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	CD40 levels	982 Scottish ancestry individuals		20q13.12	NR	rs4239702-T	0.28559	7E-15		0.39537	[0.3-0.5] unit decrease	Illumina [7903493] (imputed)	N
926	chr20	44749250	44749251	rs4239702	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	20q13.12	CD40	rs4239702-T	NR	3E-14		0.0917533	[0.026-0.157] unit decrease	Illumina [8380626] (imputed)	N
926	chr20	44749250	44749251	rs4239702	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	20q13.12	CD40	rs4239702-T	0.28	4E-14	(EA)	0.13357	[0.099-0.168] unit decrease	Illumina [8380626] (imputed)	N
926	chr20	44749250	44749251	rs4239702	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	20q13.12	CD40	rs4239702-C	0.72	1E-16	(EA)	1.14	[1.11-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
926	chr20	44749250	44749251	rs4239702	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	20q13.12	CD40	rs4239702-C	0.69	4E-18		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
926	chr20	44755375	44755376	rs41282788	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Tumor necrosis factor receptor superfamily member 5 levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs41282788-C	0.022	5E-47		0.5378	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
926	chr20	44756262	44756263	rs11569334	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Stem cell factor levels	21,758 European ancestry individuals	9,173 individuals	20q13.12		rs11569334-T	0.95	2E-14		0.1547	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
926	chr20	44757406	44757407	rs3765459	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q13.12	NR	rs3765459-A	NR	2E-8		5.653	z score decrease	Affymetrix [10847151] (imputed)	N
926	chr20	44761376	44761377	rs12481282	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20q13.12		rs12481282-G	0.733	3E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
926	chr20	44761376	44761377	rs12481282	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	20q13.12		rs12481282-G	0.722	8E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
926	chr20	44761484	44761485	rs12480534	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	20q13.12	intergenic	rs12480534-?	NR	9E-6	(SF2)			Affymetrix [5476100] (imputed)	N
926	chr20	44763200	44763201	rs62215622	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.12	NR	rs62215622-A	NR	4E-9		0.0274	[0.018-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
926	chr20	44763283	44763284	rs4813003	22446962	Onouchi Y	2012-03-25	Nat Genet	A genome-wide association study identifies three new risk loci for Kawasaki disease.	Kawasaki disease	428 Japanese ancestry cases, 3,379 Japanese ancestry controls	754 Japanese ancestry cases, 947 Japanese ancestry controls	20q13.12	CD40	rs4813003-C	0.67	5E-8		1.41	[1.20-1.66]	Illumina [463793]	N
926	chr20	44767754	44767755	rs747759	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	20q13.12	NR	rs747759-T	NR	3E-9		5.938	z score increase	Affymetrix [10847151] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	4E-9		0.030969	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	1E-9		0.031812	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	5E-8		0.0297113	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	3E-8		0.0303522	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	3E-8		0.0292962	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	4E-8		0.0289941	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
926	chr20	44792317	44792318	rs3092795	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs3092795-C	0.849452	1E-9		0.0313349	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
927	chr20	44881418	44881419	rs2425806	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	20q13.12	NR	rs2425806-T	0.9035	4E-6		0.2909	[0.17-0.41] unit increase	Illumina [NR] (imputed)	N
927	chr20	44896845	44896846	rs2425819	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	20q13.12	CDH22	rs2425819-?	NR	4E-9		0.0145345	[0.0097-0.0194] unit decrease	Affymetrix [25921788] (imputed)	N
927	chr20	44896845	44896846	rs2425819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.12	Intergenic	rs2425819-A	0.4111	4E-9	(MTAG)	0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
927	chr20	44904837	44904838	rs2425840	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.12		rs2425840-?	NR	5E-11				NR [~ 8900000] (imputed)	N
927	chr20	44907926	44907927	rs2425847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.12	Intergenic	rs2425847-A	0.5935	1E-9	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
927	chr20	44907943	44907944	rs2425848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs2425848-?	NR	1E-9				NR [~ 8900000] (imputed)	N
927	chr20	44907943	44907944	rs2425848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.12	Intergenic	rs2425848-A	0.5941	4E-8		0.0109	[0.007-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
927	chr20	44911953	44911954	rs2425856	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.12	CDH22	rs2425856-A	0.444163	1E-9		0.00842158	[0.0057-0.0111] unit increase	Affymetrix [12370749]	N
927	chr20	44914133	44914134	rs2425857	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.12	NA	rs2425857-A	0.4349	2E-11		0.0116	[0.0083-0.0149] unit increase	NR [~ 27400000] (imputed)	N
927	chr20	44918217	44918218	rs6094272	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.12	NR	rs6094272-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
927	chr20	44921630	44921631	rs6065945	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q13.12	NR	rs6065945-C	0.470163670388566	5E-6	(IGP18)	0.141	[0.081-0.201] unit increase	Illumina [~ 2500000] (imputed)	N
927	chr20	44921675	44921676	rs6032755	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	20q13.12	CDH22	rs6032755-A	0.51	9E-6		1.28		Illumina [8974355] (imputed)	N
927	chr20	44939777	44939778	rs6104543	30120336	Kikuchi M	2018-08-17	Sci Rep	Genome-wide Association Analysis of Eye Movement Dysfunction in Schizophrenia.	Eye movement in schizophrenia (horizontal position gain)	60 Japanese ancestry cases	NA	20q13.12	CDH22	rs6104543-?	NR	2E-8		0.1984	unit decrease	Affymetrix [554152]	N
928	chr20	44966657	44966658	rs2869219	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	20q13.12	NR	rs2869219-G	0.317	8E-7	(Bray-Curtis metric)	4.809399	NR z-score increase	Illumina [5293637] (imputed)	N
929	chr20	45124221	45124222	rs279720	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.12	Intergenic	rs279720-A	0.998	4E-6		0.151	unit increase	Illumina [NR] (imputed)	N
929	chr20	45186396	45186397	rs430114	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	N-acetylglutamate levels	291 European ancestry individuals	NA	20q13.12		rs430114-T	0.1615	4E-20		0.1628	unit decrease	Illumina [7049691] (imputed)	N
929	chr20	45189995	45189996	rs78681519	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.12	SLC13A3	rs78681519-A	0.0238952063563895	7E-6	(G_Alloprevotella_HB)	0.872655	[0.49-1.25] unit increase	Illumina [7711310] (imputed)	N
930	chr20	45226144	45226145	rs150017767	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	20q13.12	SLC13A3	rs150017767-A	0.103459	9E-6		0.717	[0.618 - 0.83]	Illumina [5397657] (imputed)	N
930	chr20	45232756	45232757	rs847058	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	20q13.12	SLC13A3	rs847058-?		1E-7				Illumina [479403]	N
930	chr20	45236426	45236427	rs117068934	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	20q13.12	SLC13A3	rs117068934-G	NR	3E-7		3.41	percent decrease	Affymetrix [8762422] (imputed)	N
930	chr20	45244845	45244846	rs3092098	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20q13.12	SLC13A3	rs3092098-T	0.72593	8E-15	(glutarate (pentanedioate))	0.194	[0.15-0.24] unit decrease	Illumina [13039987] (imputed)	N
930	chr20	45244845	45244846	rs3092098	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	20q13.12	SLC13A3	rs3092098-T	0.72593	8E-15	(glutarate (pentanedioate))	0.194	[0.15-0.24] unit decrease	Illumina [13039987] (imputed)	N
930	chr20	45269866	45269867	rs6011998	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.12		rs6011998-T	0.07	3E-11		6.64	z score increase	Affymetrix [9061022] (imputed)	N
930	chr20	45275662	45275663	rs2757524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.12		rs2757524-?	NR	1E-8				NR [~ 8900000] (imputed)	N
930	chr20	45276778	45276779	rs11907381	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	20q13.12	NR	rs11907381-?		8E-7	(CXCL5)	0.2283	[NR] unit increase	Illumina [NR]	N
930	chr20	45288452	45288453	rs6066043	24351856	Nanayakkara S	2013-12-18	J Occup Health	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sri Lankan Sinhalese ancestry cases, 276 Sri Lankan Sinhalese ancestry controls	NA	20q13.12	SLC13A3	rs6066043-A	0.38	2E-9		12.17	[NR] unit increase	Illumina [543848]	N
930	chr20	45288452	45288453	rs6066043	24351856	Nanayakkara S	2013-12-18	J Occup Health	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Chronic kidney disease	301 Sri Lankan Sinhalese ancestry cases, 276 Sri Lankan Sinhalese ancestry controls	NA	20q13.12	SLC13A3	rs6066043-G	0.62	2E-9		2.13	[NR]	Illumina [543848]	N
930	chr20	45348405	45348406	rs117420762	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Baseline cortisol levels in response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	20q13.12	SLC2A10	rs117420762-?	NR	3E-7				Illumina [430492]	N
931	chr20	45440005	45440006	rs3091552	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	20q13.12	NR	rs3091552-?	NR	2E-8	(Quadrant II (Nose), Segment 43)	0.03750086	NR unit increase	NR [7417619] (imputed)	N
931	chr20	45440005	45440006	rs3091552	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	20q13.12	NR	rs3091552-?	NR	1E-12	(Quadrant II (Nose), Segment 45)	0.035070404	NR unit increase	NR [7417619] (imputed)	N
931	chr20	45460322	45460323	rs6066084	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	20q13.12	intergenic	rs6066084-A	0.06	2E-6	(% body fat)	0.85	[NR] % increase	Affymetrix [408775]	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	AL031055.1	rs10485462-A	NR	3E-9		0.0201633	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	AL031055.1	rs10485462-A	NR	2E-9		0.0226984	[0.015-0.03] unit increase	Affymetrix [323858] (imputed)	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	AL031055.1	rs10485462-A	NR	5E-9		0.0199421	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	AL031055.1	rs10485462-A	NR	2E-9		0.0228522	[0.015-0.03] unit increase	Affymetrix [127266] (imputed)	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	AL031055.1	rs10485462-A	NR	3E-11		0.0234185	[0.016-0.03] unit decrease	Affymetrix [321788] (imputed)	N
931	chr20	45461108	45461109	rs10485462	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	AL031055.1	rs10485462-A	NR	1E-9		0.0207294	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
931	chr20	45473013	45473014	rs6018099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q13.12		rs6018099-?	NR	4E-9				NR [~ 8900000] (imputed)	N
931	chr20	45473435	45473436	rs6012052	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.12	NR	rs6012052-C	0.491135	4E-12		0.0216077	[0.016-0.028] unit increase	NR [19129689] (imputed)	N
932	chr20	45484154	45484155	rs3091995	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs3091995-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45486816	45486817	rs12481092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	RN7SKP33	rs12481092-T	NR	3E-15		0.0253459	[0.019-0.032] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45486816	45486817	rs12481092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs12481092-T	NR	2E-16		0.0291806	[0.022-0.036] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45486816	45486817	rs12481092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	RN7SKP33	rs12481092-T	NR	4E-16		0.0260419	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45486816	45486817	rs12481092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs12481092-T	NR	1E-16		0.0293724	[0.022-0.036] unit decrease	Affymetrix [127266] (imputed)	N
932	chr20	45486816	45486817	rs12481092	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	20q13.12	EYA2	rs12481092-T	0.2723	9E-8		0.0153	[0.0096-0.021] unit increase	Affymetrix [19819130] (imputed)	N
932	chr20	45486816	45486817	rs12481092	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20q13.12	EYA2	rs12481092-T	0.2723	2E-22		0.0257	[0.021-0.031] unit increase	Affymetrix [19819130] (imputed)	N
932	chr20	45486816	45486817	rs12481092	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20q13.12	EYA2	rs12481092-T	0.2723	8E-18		0.0226	[0.018-0.028] unit increase	Affymetrix [19819130] (imputed)	N
932	chr20	45486990	45486991	rs6090566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs6090566-C	NR	1E-11		0.0216403	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45486990	45486991	rs6090566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs6090566-C	NR	1E-11		0.0217039	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
932	chr20	45486990	45486991	rs6090566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs6090566-C	NR	4E-12		0.0226748	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45486990	45486991	rs6090566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs6090566-C	NR	5E-9		0.0183746	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
932	chr20	45487370	45487371	rs6066089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs6066089-C	NR	1E-10		0.0217259	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45489807	45489808	rs3092209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q13.12	RN7SKP33	rs3092209-T	NR	6E-9		0.0183137	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45493263	45493264	rs6066093	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	20q13.12	NR	rs6066093-C	0.336128	3E-8		0.0553247	[0.035-0.076] unit increase	Affymetrix [21375087] (imputed)	N
932	chr20	45493817	45493818	rs13044825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.12		rs13044825-?	NR	8E-30				NR [~ 8900000] (imputed)	N
932	chr20	45493854	45493855	rs13044449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	RP11-323C15.1	rs13044449-G	NR	2E-11		0.0204339	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
932	chr20	45493854	45493855	rs13044449	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	RP11-323C15.1	rs13044449-G	NR	1E-12		0.0209458	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
932	chr20	45497722	45497723	rs6124878	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	20q13.12	EYA2	rs6124878-A	0.06	4E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
932	chr20	45502531	45502532	rs79952334	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	20q13.12	NR	rs79952334-?	NR	9E-6	(Richness)	16.5194	[9.27-23.77] unit decrease	Illumina [5293637] (imputed)	N
932	chr20	45502531	45502532	rs79952334	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	20q13.12	NR	rs79952334-?	NR	4E-6	(ACE metric)	1.10702	[0.64-1.57] unit decrease	Illumina [5293637] (imputed)	N
932	chr20	45502864	45502865	rs11698277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.12	RP11-323C15.1	rs11698277-T	NR	4E-12		0.0212274	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
932	chr20	45502864	45502865	rs11698277	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.12	RP11-323C15.1	rs11698277-T	NR	2E-16		0.0253129	[0.019-0.031] unit decrease	Affymetrix [321169] (imputed)	N
932	chr20	45503213	45503214	rs6012059	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.12	NR	rs6012059-G	0.614227	1E-9		0.014013347	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr20	45503213	45503214	rs6012059	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20q13.12	NR	rs6012059-A	NR	2E-6		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
932	chr20	45503213	45503214	rs6012059	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q13.12	NR	rs6012059-A	0.387352850701881	5E-12		0.027685227	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45513434	45513435	rs1984076	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	20q13.12	NR	rs1984076-A	0.416832342694734	6E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45518432	45518433	rs74275091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.12	Intergenic	rs74275091-T	1.0	3E-6	(AA)	0.675	unit increase	Illumina [NR] (imputed)	N
932	chr20	45520151	45520152	rs6066101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6066101-A	NR	1E-13		0.0217928	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
932	chr20	45520151	45520152	rs6066101	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6066101-A	NR	5E-16		0.0238596	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
932	chr20	45520151	45520152	rs6066101	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs6066101-?	NR	4E-50				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	3E-24		0.028917	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	1E-24		0.029252	[0.024-0.035] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	5E-11		0.0188893	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	1E-9		0.0179332	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	2E-10		0.0180395	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
932	chr20	45522101	45522102	rs6063031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6063031-A	NR	7E-15		0.0223953	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
932	chr20	45522559	45522560	rs35402690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs35402690-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45523638	45523639	rs11700141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs11700141-C	NR	3E-21		0.0304969	[0.024-0.037] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45523638	45523639	rs11700141	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs11700141-C	NR	3E-21		0.0305091	[0.024-0.037] unit decrease	Affymetrix [127266] (imputed)	N
932	chr20	45526120	45526121	rs1007330	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.12	NR	rs1007330-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45526120	45526121	rs1007330	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	20q13.12	NR	rs1007330-T	0.3773	4E-23		0.0201	[0.016-0.024] unit decrease	NR [~ 27400000] (imputed)	N
932	chr20	45526406	45526407	rs1007331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.12		rs1007331-C	NR	1E-8		0.0121	[0.008-0.0162] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
932	chr20	45526659	45526660	rs1572053	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs1572053-A	NR	7E-20		0.0275874	[0.022-0.034] unit decrease	Affymetrix [321788] (imputed)	N
932	chr20	45529570	45529571	rs2236519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs2236519-A	NR	7E-33		0.0349312	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45529570	45529571	rs2236519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs2236519-A	NR	2E-33		0.0352004	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45529570	45529571	rs2236519	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs2236519-A	NR	8E-17		0.0243419	[0.019-0.03] unit decrease	Affymetrix [321016] (imputed)	N
932	chr20	45529570	45529571	rs2236519	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	20q13.12	NR	rs2236519-A	0.37	3E-55		0.03	[0.026-0.034] unit increase	Affymetrix [2446094] (imputed)	N
932	chr20	45529570	45529571	rs2236519	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	20q13.12	NR	rs2236519-A	0.37	5E-8				Affymetrix [2446094] (imputed)	N
932	chr20	45529570	45529571	rs2236519	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q13.12	NR	rs2236519-A	0.3693	4E-58		0.0298	[0.026-0.034] unit increase	NR [~ 27400000] (imputed)	N
932	chr20	45529570	45529571	rs2236519	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.12	NA	rs2236519-A	0.3693	2E-30		0.0212	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
932	chr20	45529570	45529571	rs2236519	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		20q13.12	EYA2	rs2236519-A	0.38	4E-8	(EA)	18.06	[11.63-24.49] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
932	chr20	45532121	45532122	rs6124883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124883-T	NR	3E-16		0.0259246	[0.02-0.032] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45532121	45532122	rs6124883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124883-T	NR	4E-16		0.0257706	[0.02-0.032] unit increase	Affymetrix [127266] (imputed)	N
932	chr20	45534052	45534053	rs6124885	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	20q13.12	EYA2	rs6124885-A	NR	1E-8		0.860106	[0.81-0.91]	Illumina [NR] (imputed)	N
932	chr20	45534918	45534919	rs6018151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6018151-C	NR	5E-10		0.0200243	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45534918	45534919	rs6018151	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6018151-C	NR	1E-8		0.017672	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
932	chr20	45534918	45534919	rs6018151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.12	EYA2	rs6018151-T	0.5256	2E-9		0.013429366	[0.009-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr20	45534918	45534919	rs6018151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.12	EYA2	rs6018151-T	0.525671	4E-9		0.013127501	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr20	45534918	45534919	rs6018151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.12	EYA2	rs6018151-T	0.525681	3E-9		0.01319823	[0.0088-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr20	45536062	45536063	rs11698093	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	20q13.12	NR	rs11698093-T	0.57	4E-43		0.0278	[0.024-0.032] unit increase	NR [~ 27400000] (imputed)	N
932	chr20	45538433	45538434	rs6018158	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	20q13.12	EYA2, ZNF663, SLC13A3, MKRN7P, ZNF334, TP53RK, SLC2A10, OCSTAMP, MIR3616, ZMYND8, LOC100131496	rs6018158-T	0.407	1E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45538433	45538434	rs6018158	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	20q13.12	EYA2, ZNF663, SLC13A3, MKRN7P, ZNF334, TP53RK, SLC2A10, OCSTAMP, MIR3616, ZMYND8, LOC100131496	rs6018158-T	0.407016072591424	3E-6	(women)	0.0303	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45538433	45538434	rs6018158	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	20q13.12	EYA2, ZNF663, SLC13A3, MKRN7P, ZNF334, TP53RK, SLC2A10, OCSTAMP, MIR3616, ZMYND8, LOC100131496	rs6018158-T	0.41	5E-6	(women)	0.037	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45538433	45538434	rs6018158	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	20q13.12	EYA2, ZNF663, SLC13A3, MKRN7P, ZNF334, TP53RK, SLC2A10, OCSTAMP, MIR3616, ZMYND8, LOC100131496	rs6018158-T	0.407	4E-10		0.0303	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45539250	45539251	rs6124886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124886-A	NR	4E-9		0.0186409	[0.012-0.025] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45542878	45542879	rs4810575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs4810575-G	NR	4E-13		0.0235476	[0.017-0.03] unit decrease	Affymetrix [323123] (imputed)	N
932	chr20	45543856	45543857	rs113377538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs113377538-T	NR	2E-8		0.0379727	[0.025-0.051] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45543856	45543857	rs113377538	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs113377538-T	NR	1E-8		0.0387345	[0.025-0.052] unit decrease	Affymetrix [127266] (imputed)	N
932	chr20	45543856	45543857	rs113377538	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs113377538-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45544148	45544149	rs6066113	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6066113-T	NR	2E-11		0.0217922	[0.015-0.028] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45544503	45544504	rs6066114	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6066114-C	NR	4E-18		0.0294347	[0.023-0.036] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45549870	45549871	rs4810576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs4810576-A	NR	2E-28		0.0333526	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45549870	45549871	rs4810576	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs4810576-A	NR	4E-29		0.0337718	[0.028-0.04] unit decrease	Affymetrix [319769] (imputed)	N
932	chr20	45550488	45550489	rs4809604	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	20q13.12		rs4809604-?	NR	1E-10		0.00596076	[0.0041-0.0078] unit decrease	NR [NR]	N
932	chr20	45550488	45550489	rs4809604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs4809604-G	NR	1E-8		0.0182359	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45550488	45550489	rs4809604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs4809604-G	NR	1E-8		0.0181538	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
932	chr20	45550488	45550489	rs4809604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.12	EYA2	rs4809604-G	NR	2E-11		0.0194789	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
932	chr20	45550488	45550489	rs4809604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.12	EYA2	rs4809604-G	NR	4E-14		0.0220011	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
932	chr20	45550488	45550489	rs4809604	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.12	NR	rs4809604-T	0.574004	2E-9		0.0067324	[0.0044-0.009] unit increase	Affymetrix [16582621] (imputed)	N
932	chr20	45550488	45550489	rs4809604	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.12	NR	rs4809604-T	0.574004	1E-7		0.00646163	[0.004-0.0089] unit increase	Affymetrix [16582614] (imputed)	N
932	chr20	45550488	45550489	rs4809604	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q13.12	NR	rs4809604-T	0.5741	6E-27		0.0194	[0.016-0.023] unit decrease	NR [~ 27400000] (imputed)	N
932	chr20	45551733	45551734	rs12481664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.12		rs12481664-?	NR	2E-50				NR [~ 8900000] (imputed)	N
932	chr20	45557016	45557017	rs1412956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs1412956-G	NR	2E-33		0.0347162	[0.029-0.04] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45557016	45557017	rs1412956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs1412956-G	NR	7E-34		0.0350064	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45557016	45557017	rs1412956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs1412956-G	NR	1E-22		0.0292581	[0.023-0.035] unit decrease	Affymetrix [321788] (imputed)	N
932	chr20	45557016	45557017	rs1412956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs1412956-G	NR	2E-20		0.0266881	[0.021-0.032] unit decrease	Affymetrix [321016] (imputed)	N
932	chr20	45557064	45557065	rs1412957	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q13.12	EYA2	rs1412957-A	0.57275	2E-10		0.00249693	[0.0017-0.0033] unit decrease	Affymetrix [13995440] (imputed)	N
932	chr20	45557064	45557065	rs1412957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.12	NR	rs1412957-A	0.573839	4E-16		0.00662364	[0.0049-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
932	chr20	45557064	45557065	rs1412957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.12	NR	rs1412957-A	0.573839	4E-10		0.00573496	[0.0039-0.0076] unit increase	Affymetrix [16582965] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20q13.12		rs6018185-C	NR	1E-8		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6018185-T	NR	9E-13		0.0229351	[0.017-0.029] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6018185-T	NR	6E-13		0.023077	[0.017-0.029] unit decrease	Affymetrix [127266] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6018185-T	NR	1E-13		0.0222445	[0.016-0.028] unit increase	Affymetrix [321788] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6018185-T	NR	3E-15		0.0229114	[0.017-0.029] unit increase	Affymetrix [321016] (imputed)	N
932	chr20	45557450	45557451	rs6018185	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6018185-T	NR	9E-10		0.0193379	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
932	chr20	45557450	45557451	rs6018185	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q13.12	NR	rs6018185-C	NR	7E-10		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
932	chr20	45557468	45557469	rs6066121	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.12	NR	rs6066121-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q13.12	EYA2	rs6090583-A	0.4758	6E-9	(EA)	0.0263	[0.017-0.035] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	20q13.12	EYA2	rs6090583-A	0.4744	6E-6	(EA, women)	0.0265	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q13.12	EYA2	rs6090583-?	0.4758	3E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.12	EYA2	rs6090583-A	0.495	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.12	EYA2	rs6090583-A	0.495	2E-7	(women)	0.024	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.12	EYA2	rs6090583-A	0.495	1E-8		0.0201	[0.013-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
932	chr20	45558830	45558831	rs6090583	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.12	EYA2	rs6090583-A	0.4907	2E-10		0.0212	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
932	chr20	45558830	45558831	rs6090583	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.12	EYA2	rs6090583-A	0.4878	6E-10	(women)	0.0275	[0.019-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
932	chr20	45558830	45558831	rs6090583	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.12	EYA2	rs6090583-A	0.48	6E-11	(EA)	0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
932	chr20	45558830	45558831	rs6090583	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.12	EYA2	rs6090583-A	0.4782	3E-10	(EA, women)	0.0286	[0.02-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
932	chr20	45565910	45565911	rs750140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs750140-A	NR	6E-14		0.0238185	[0.018-0.03] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45567505	45567506	rs1333295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs1333295-A	NR	5E-11		0.0208878	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45567505	45567506	rs1333295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs1333295-A	NR	3E-11		0.0211566	[0.015-0.027] unit increase	Affymetrix [127266] (imputed)	N
932	chr20	45568422	45568423	rs6063038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6063038-T	NR	3E-14		0.0241915	[0.018-0.03] unit decrease	Affymetrix [127266] (imputed)	N
932	chr20	45568422	45568423	rs6063038	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6063038-T	NR	2E-8		0.0176552	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45569658	45569659	rs6066131	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs6066131-?	NR	4E-32				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45569795	45569796	rs6124901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q13.12	EYA2	rs6124901-T	0.3016	6E-6	(EA, women)	0.0258	[0.015-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
932	chr20	45569795	45569796	rs6124901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	20q13.12	EYA2	rs6124901-T	0.3016	4E-8	(EA)	0.0243	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	7E-20		0.0259973	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	5E-20		0.0261238	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	2E-8		0.0160128	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	6E-9		0.0171423	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	1E-9		0.0173353	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
932	chr20	45573210	45573210	rs3092457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.12	EYA2	rs3092457-T	NR	1E-11		0.0195155	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6124902-T	NR	3E-17		0.0269537	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124902-T	NR	2E-9		0.0213173	[0.014-0.028] unit increase	Affymetrix [323858] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6124902-T	NR	3E-17		0.0270463	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124902-T	NR	2E-9		0.0212626	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6124902-T	NR	3E-13		0.0241983	[0.018-0.031] unit decrease	Affymetrix [321788] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124902-T	NR	4E-13		0.0262569	[0.019-0.033] unit decrease	Affymetrix [323858] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6124902-T	NR	2E-11		0.0214423	[0.015-0.028] unit decrease	Affymetrix [321016] (imputed)	N
932	chr20	45575430	45575431	rs6124902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.12	EYA2	rs6124902-T	NR	1E-8		0.0198851	[0.013-0.027] unit decrease	Affymetrix [323123] (imputed)	N
932	chr20	45576906	45576907	rs1206751	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q13.12		rs1206751-?	NR	4E-19		0.0181207	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
932	chr20	45578377	45578378	rs1206755	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q13.12	EYA2	rs1206755-C	0.527075	2E-12		0.0132148	[0.0095-0.0169] unit decrease	NR [13737936] (imputed)	N
932	chr20	45582471	45582472	rs1206760	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	20q13.12	EYA2	rs1206760-A	0.5447	9E-10		0.0112	[0.0075-0.0149] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
932	chr20	45586254	45586255	rs9679828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs9679828-G	NR	2E-14		0.0229843	[0.017-0.029] unit decrease	Affymetrix [321788] (imputed)	N
932	chr20	45589258	45589259	rs12480223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs12480223-A	NR	5E-19		0.0257087	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45589258	45589259	rs12480223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs12480223-A	NR	4E-19		0.0257267	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
932	chr20	45589258	45589259	rs12480223	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs12480223-A	NR	3E-14		0.0218543	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
932	chr20	45589260	45589261	rs12481408	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs12481408-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
932	chr20	45592841	45592842	rs1211644	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	20q13.12	EYA2	rs1211644-C	0.2416	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
932	chr20	45594294	45594295	rs4810580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q13.12	NR	rs4810580-T	0.782389	6E-10		0.00962863	[0.0067-0.0126] unit increase	Affymetrix [16585854] (imputed)	N
932	chr20	45594294	45594295	rs4810580	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q13.12	NR	rs4810580-T	0.782389	1E-8		0.0100343	[0.0066-0.0134] unit increase	Affymetrix [16585866] (imputed)	N
932	chr20	45594710	45594711	rs6066138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q13.12		rs6066138-A	NR	2E-14		0.0198	[0.015-0.025] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
932	chr20	45594710	45594711	rs6066138	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.12	NR	rs6066138-G	0.7252	2E-18		0.0451	[0.035-0.055] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
932	chr20	45594710	45594711	rs6066138	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.12	NR	rs6066138-G	0.7376	6E-19		0.042	[0.033-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
932	chr20	45594710	45594711	rs6066138	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	20q13.12	EYA2	rs6066138-A	0.278361954233567	2E-9		0.049	[0.033-0.065] unit decrease	NR [5035015] (imputed)	N
932	chr20	45595464	45595464	rs35126216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.12		rs35126216-CA	NR	5E-11		0.0829	[0.058-0.108] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
932	chr20	45597545	45597546	rs6066141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q13.12		rs6066141-C	NR	4E-18		0.0221	[0.017-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
932	chr20	45597545	45597546	rs6066141	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.12	NR	rs6066141-T	NR	2E-9		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
932	chr20	45598563	45598564	rs6063048	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.12	EYA2	rs6063048-G	0.7246	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
932	chr20	45599089	45599090	rs55966194	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q13.12	EYA2	rs55966194-C	0.718009	2E-15		0.0176844	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
932	chr20	45602036	45602037	rs6066148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6066148-C	NR	4E-16		0.0271586	[0.021-0.034] unit increase	Affymetrix [321788] (imputed)	N
932	chr20	45602036	45602037	rs6066148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6066148-C	NR	1E-11		0.0218338	[0.016-0.028] unit increase	Affymetrix [321016] (imputed)	N
932	chr20	45602637	45602638	rs6066149	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20q13.12		rs6066149-A	NR	3E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
932	chr20	45603823	45603824	rs59791349	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	20q13.12	NR	rs59791349-T	0.2537	2E-10				Affymetrix, Illumina [at least 2500000] (imputed)	N
932	chr20	45604239	45604240	rs6063050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	EYA2	rs6063050-C	NR	5E-8				Affymetrix, Illumina [NR] (imputed)	N
932	chr20	45604239	45604240	rs6063050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	20q13.12	EYA2	rs6063050-C	NR	5E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
932	chr20	45604239	45604240	rs6063050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	EYA2	rs6063050-C	NR	4E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
932	chr20	45604239	45604240	rs6063050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	20q13.12	EYA2	rs6063050-C	NR	3E-8				Affymetrix, Illumina [NR] (imputed)	N
932	chr20	45604239	45604240	rs6063050	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	20q13.12	EYA2	rs6063050-C	NR	3E-6		0.011	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
932	chr20	45604419	45604420	rs6063051	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	20q13.12	EYA2	rs6063051-T	0.255879	8E-39		0.0279914	[0.024-0.032] unit decrease	NR [13737936] (imputed)	N
932	chr20	45604419	45604420	rs6063051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q13.12		rs6063051-?	NR	5E-45				NR [~ 8900000] (imputed)	N
932	chr20	45605028	45605028	rs78853648	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q13.12		rs78853648-?	NR	6E-44		0.0332531	[0.029-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
932	chr20	45605548	45605548	rs3092018	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q13.12		rs3092018-?	NR	9E-44		0.0331582	[0.028-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
932	chr20	45605548	45605548	rs3092018	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q13.12	EYA2	rs3092018-A	0.257783	1E-6	(women)	0.0255111	[0.015-0.036] unit decrease	NR [17166351] (imputed)	N
932	chr20	45605548	45605548	rs3092018	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q13.12	EYA2	rs3092018-A	0.256725	1E-16		0.0321457	[0.025-0.04] unit decrease	NR [17166351] (imputed)	N
932	chr20	45605548	45605548	rs3092018	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	20q13.12	EYA2	rs3092018-A	0.255514	7E-10	(men)	0.0356289	[0.024-0.047] unit decrease	NR [17166351] (imputed)	N
932	chr20	45606852	45606853	rs6066150	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	20q13.12		rs6066150-?	NR	3E-8		0.0056419	[0.0036-0.0076] unit increase	NR [NR]	N
932	chr20	45606852	45606853	rs6066150	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	20q13.12	EYA2	rs6066150-?	NR	1E-10		0.019	[0.014-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
933	chr20	45626850	45626851	rs3787267	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20q13.12	NR	rs3787267-T	0.6532	1E-8		0.001364	[0.00089-0.00184] unit decrease	Affymetrix [NR] (imputed)	N
933	chr20	45629506	45629507	rs1206800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs1206800-C	NR	2E-8		0.0186108	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
933	chr20	45652076	45652077	rs4809613	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (intracranial brain volume)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	20q13.12	EYA2	rs4809613-A	NR	8E-7		3.98	percent decrease	Affymetrix [8762422] (imputed)	N
933	chr20	45673212	45673213	rs1206807	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.12	ZMYND8	rs1206807-?	NR	5E-6	(LPC 18:2)	0.22144768	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
933	chr20	45673212	45673213	rs1206807	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.12	ZMYND8	rs1206807-?	NR	3E-6	(LPC 20:4)	0.23243618	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
933	chr20	45680501	45680502	rs878131	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	20q13.12	EYA2	rs878131-A	0.25	4E-6	(AA-triglyceride response)	17.21	[9.92-24.5] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
933	chr20	45681277	45681278	rs6066181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	20q13.12		rs6066181-?	NR	1E-19				NR [~ 8900000] (imputed)	N
933	chr20	45681787	45681788	rs8125525	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	20q13.12	EYA2	rs8125525-C	0.74	2E-8				NR [> 9500000] (imputed)	N
933	chr20	45682340	45682341	rs6094570	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	20q13.12	EYA2	rs6094570-A	0.7412	5E-11		1.0893246	[1.06-1.12]	Affymetrix [15688218] (imputed)	N
933	chr20	45684475	45684476	rs6066184	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	20q13.12	NR	rs6066184-C	0.7448	7E-16		1.0574179	[1.04-1.07]	Affymetrix [15688218] (imputed)	N
933	chr20	45689782	45689783	rs4809619	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	20q13.12	EYA2	rs4809619-G	0.752	4E-9		0.029	[0.019-0.039] unit decrease	NR [NR] (imputed)	N
933	chr20	45689782	45689783	rs4809619	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	20q13.12	EYA2	rs4809619-G	0.752	4E-9		0.029	[0.019-0.039] unit decrease	NR [7647814] (imputed)	N
933	chr20	45705791	45705792	rs1206818	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	20q13.12	EYA2	rs1206818-A	0.23	7E-8		1.41	[1.24-1.59]	Affymetrix [7515136] (imputed)	N
933	chr20	45715236	45715237	rs118152638	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	20q13.12	NR	rs118152638-T	0.006878	4E-6		0.8498	[0.49-1.21] unit decrease	Illumina [10677593] (imputed)	N
933	chr20	45728164	45728165	rs6018272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.12	EYA2	rs6018272-C	NR	3E-8		0.0178404	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
933	chr20	45728164	45728165	rs6018272	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs6018272-C	NR	2E-8		0.0181682	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
933	chr20	45740963	45740964	rs870160	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs870160-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
933	chr20	45742700	45742701	rs6066206	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	20q13.12		rs6066206-?	NR	2E-6		0.21	[0.12-0.3] unit increase	Affymetrix [NR] (imputed)	N
934	chr20	45757654	45757655	rs4809627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	20q13.12	EYA2	rs4809627-C	NR	3E-8		0.0179593	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
934	chr20	45757654	45757655	rs4809627	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	20q13.12	NR	rs4809627-T	0.5223	5E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
934	chr20	45758257	45758258	rs1206825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.12		rs1206825-?	NR	1E-12				NR [~ 8900000] (imputed)	N
934	chr20	45760082	45760083	rs2154035	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.12	Intergenic	rs2154035-T	0.6253	5E-9	(MTAG)	0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
934	chr20	45760082	45760083	rs2154035	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.12	Intergenic	rs2154035-T	0.6253	2E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
934	chr20	45785020	45785021	rs4810619	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.12	NR	rs4810619-?	NR	4E-14				Affymetrix [NR]	N
934	chr20	45789952	45789953	rs3092781	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.12	NA	rs3092781-T	0.451	2E-17		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
934	chr20	45789952	45789953	rs3092781	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q13.12	NR	rs3092781-T	0.451	2E-17		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
934	chr20	45793649	45793650	rs1008029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.12	EYA2	rs1008029-A	NR	2E-10		0.0186588	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
934	chr20	45797882	45797883	rs3091653	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.12	NR	rs3091653-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
934	chr20	45801916	45801917	rs6066222	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q13.12		rs6066222-?	NR	1E-8				NR [~ 8900000] (imputed)	N
934	chr20	45816276	45816277	rs6124969	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	20q13.12	EYA2	rs6124969-T	0.3642	9E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix [~ 7740000] (imputed)	N
934	chr20	45827697	45827698	rs13041414	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q13.12	NR	rs13041414-A	0.5992	2E-6		0.014804066	[0.0088-0.0208] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
934	chr20	45827722	45827723	rs6124977	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	20q13.12	NR	rs6124977-T	0.5988	3E-9		0.0139	[0.0094-0.0184] unit decrease	Illumina [NR] (imputed)	N
934	chr20	45834278	45834279	rs7262634	24503447	Nelson D	2014-02-06	Antivir Ther	Genome-wide association study to characterize serum bilirubin elevations in patients with HCV treated with GS-9256, an HCV NS3 serine protease inhibitor.	Response to protease inhibitor treatment in hepatitis c (bilirubin toxicity)	176 European ancestry individuals	NA	20q13.12	ZMYND8	rs7262634-?	NR	1E-6		25.0	[NR]	Illumina [4466593]	N
934	chr20	45837895	45837896	rs4555399	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.12		rs4555399-A	NR	2E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
934	chr20	45840458	45840459	rs6063085	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	20q13.12	ZMYND8	rs6063085-A	0.625251	3E-11		0.01571	[0.011-0.02] unit decrease	Affymetrix [19400838] (imputed)	N
934	chr20	45840458	45840459	rs6063085	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	20q13.12	NR	rs6063085-A	0.6311	6E-11		0.0125	[0.0088-0.0162] unit decrease	Illumina [NR] (imputed)	N
934	chr20	45840458	45840459	rs6063085	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	20q13.12	NR	rs6063085-A	0.6289	6E-9		0.0128	[0.0085-0.0171] unit increase	Illumina [NR] (imputed)	N
934	chr20	45841051	45841052	rs910187	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	20q13.12	ZMYND8	rs910187-G		3E-10		0.0058	[0.004-0.0076] unit increase	Affymetrix [13304133] (imputed)	N
934	chr20	45841051	45841052	rs910187	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	20q13.12	NR	rs910187-G	NR	3E-9		1.0309278		NR [NR] (imputed)	N
934	chr20	45841051	45841052	rs910187	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q13.12	NR	rs910187-G	0.627	2E-8		1.0351967	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
934	chr20	45841051	45841052	rs910187	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20q13.12	NR	rs910187-A	0.374591552949093	2E-11		0.006336388	[0.0045-0.0082] unit decrease	NR [NR]	N
934	chr20	45841051	45841052	rs910187	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	20q13.12	NR	rs910187-A	0.374591552949093	3E-10		0.009757282	[0.0067-0.0128] unit decrease	NR [NR]	N
934	chr20	45841051	45841052	rs910187	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	20q13.12	NR	rs910187-A	0.374591552949093	4E-10		0.006215197	[0.0043-0.0082] unit decrease	NR [NR]	N
934	chr20	45841051	45841052	rs910187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	20q13.12		rs910187-?	NR	3E-8				NR [~ 8900000] (imputed)	N
934	chr20	45841051	45841052	rs910187	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Migraine	53,109 European ancestry cases, 230,876 European ancestry controls	NA	20q13.12	ZMYND8	rs910187-?	NR	4E-8		1.045	[1.029-1.061]	Illumina [13763073] (imputed)	N
934	chr20	45843855	45843856	rs6066242	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	20q13.12		rs6066242-?	NR	1E-10		0.0202	unit increase	NR [NR]	N
934	chr20	45860908	45860909	rs57808107	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	20q13.12	Intergenic	rs57808107-?		2E-6		101.5	[60.14-142.86] unit increase	Illumina [~ 10000000] (imputed)	N
935	chr20	45884384	45884385	rs13037018	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.12	ZMYND8	rs13037018-?		3E-6				Illumina [4322238] (imputed)	N
935	chr20	45944658	45944659	rs17726337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.12		rs17726337-C	NR	5E-10		0.0385	[0.026-0.051] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
935	chr20	45944658	45944659	rs17726337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.12	ZMYND8	rs17726337-C	0.037387	4E-44		0.0836854	[0.072-0.095] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr20	45944658	45944659	rs17726337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs17726337-G	0.963167	2E-60				Affymetrix, Illumina [17210439] (imputed)	N
935	chr20	45944658	45944659	rs17726337	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.12	NR	rs17726337-G	0.962351	5E-63		0.086596	[0.076-0.097] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
935	chr20	45944658	45944659	rs17726337	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.12	ZMYND8	rs17726337-C	0.0391	5E-20		0.08812654	[0.069-0.107] unit decrease	Affymetrix [~ 2500000] (imputed)	N
935	chr20	45979088	45979089	rs2868829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q13.12	ZMYND8	rs2868829-C	0.177644	6E-10		0.018642187	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
935	chr20	45979088	45979089	rs2868829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q13.12	ZMYND8	rs2868829-C	0.177655	4E-9		0.017680975	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
935	chr20	45979088	45979089	rs2868829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q13.12	NR	rs2868829-C	0.177794	4E-11		0.018356	[0.013-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
935	chr20	45986333	45986337	rs148046963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.12	ZMYND8	rs148046963-T	0.033071	1E-10		0.04100979	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr20	45986983	45986984	rs6018424	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.12	NR	rs6018424-T	0.19945999999999997	4E-14		0.00779169	[0.0057-0.0099] unit increase	Affymetrix [16582909] (imputed)	N
935	chr20	45986983	45986984	rs6018424	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.12	NR	rs6018424-T	0.19945999999999997	5E-11		0.00771857	[0.0054-0.01] unit increase	Affymetrix [16582965] (imputed)	N
936	chr20	46009843	46009844	rs6066295	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Bipolar disorder	11,897 European ancestry female cases, 15,538 European ancestry female controls, 8,027 European ancestry male cases, 15,009 European ancestry male controls	NA	20q13.12	ZMYND8, LINC01754	rs6066295-A	0.8249	2E-7	(male)	0.1903	[0.12-0.26] unit increase	NR [NR] (imputed)	N
936	chr20	46089234	46089235	rs6122579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.12		rs6122579-G	0.225578	3E-10		0.01716995	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
936	chr20	46095648	46095649	rs6094710	23989986	Evangelou E	2013-08-29	Ann Rheum Dis	A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip.	Osteoarthritis (hip)	up to 4,734 European ancestry cases, up to 46,903 European ancestry controls	up to 6,928 European ancestry cases, up to 20,570 European ancestry controls	20q13.12	NCOA3	rs6094710-A	0.04	2E-10		1.28	[1.18-1.39]	Illumina [2567279] (imputed)	N
936	chr20	46120167	46120168	rs62203108	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.12	NCOA3	rs62203108-T	0.713194	3E-14		0.0165608	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
937	chr20	46208604	46208605	rs6125048	19176441	Yang JJ	2009-01-28	JAMA	Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.	Response to treatment for acute lymphoblastic leukemia	356 European ancestry cases, 53 Black cases, 78 cases	NA	20q13.12	NCOA3	rs6125048-T	NR	2E-6		2.73	[1.08-6.88]	Affymetrix [476796]	N
937	chr20	46219057	46219058	rs13042367	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.12	NCOA3	rs13042367-A	0.721412	7E-11		0.0139068	[0.0097-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
937	chr20	46228666	46228667	rs2143491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.12	NR	rs2143491-A	0.351536	1E-14				Affymetrix, Illumina [24588908] (imputed)	N
937	chr20	46228666	46228667	rs2143491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.12	NR	rs2143491-A	0.357978	9E-14		0.014264	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
938	chr20	46279826	46279827	rs6018623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q13.12		rs6018623-A	NR	1E-8		0.0204	[0.013-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
938	chr20	46286238	46286239	rs445219	34524976	Nolan J	2021-09-01	Eur J Endocrinol	Genome-wide analysis of thyroid function in Australian adolescents highlights SERPINA7 and NCOA3.	Thyroid peroxidase antibody levels	2,832 European ancestry individuals	1,104 European ancestry individuals	20q13.12		rs445219-C	0.07	2E-9		0.0561	unit increase	Illumina [7522526] (imputed)	N
938	chr20	46290249	46290250	rs2281279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs2281279-C	NR	4E-11		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
938	chr20	46290249	46290250	rs2281279	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.12	NR	rs2281279-C	NR	3E-11		0.018	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
938	chr20	46290249	46290250	rs2281279	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.12	SULF2	rs2281279-T	0.7201	1E-12		0.0183	[0.013-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
938	chr20	46306827	46306828	rs34107769	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	20q13.12	NR	rs34107769-T	0.7068	1E-8		1.0309278	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
938	chr20	46336025	46336026	rs4549165	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	20q13.12	SULF2	rs4549165-C	0.022	4E-6	(AA)	0.098	NR unit decrease	Illumina [NR] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	9E-15		0.0367149	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	4E-15		0.0352177	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	1E-16		0.0380276	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	1E-8		0.0283119	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	2E-14		0.0364484	[0.027-0.046] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	5E-16		0.036403	[0.028-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	6E-17		0.0385944	[0.03-0.048] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	4E-15		0.0359358	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	2E-15		0.0370022	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	3E-14		0.0340049	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	2E-15		0.0359246	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	2E-15		0.0372435	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	1E-14		0.0345599	[0.026-0.043] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	3E-11		0.0319642	[0.023-0.041] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	4E-14		0.0356539	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	3E-13		0.0329783	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	9E-15		0.0356159	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	2E-14		0.0361135	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	1E-13		0.0332906	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	6E-13		0.0325331	[0.024-0.041] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20q13.12		rs4239651-T	0.205758	3E-15		0.0369817	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340595	46340596	rs4239651	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.12		rs4239651-C	NR	2E-19		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
938	chr20	46340595	46340596	rs4239651	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.12	SULF2	rs4239651-T	0.205527	4E-28		0.0259714	[0.021-0.031] unit decrease	Affymetrix [NR] (imputed)	N
938	chr20	46340595	46340596	rs4239651	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.12	SULF2	rs4239651-T	0.205607	2E-27		0.0264197	[0.022-0.031] unit decrease	Affymetrix [NR] (imputed)	N
938	chr20	46340973	46340974	rs6018652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20q13.12		rs6018652-G	0.207471	3E-8		0.027749	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
938	chr20	46340973	46340974	rs6018652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs6018652-G	0.207466	2E-10		0.0299344	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
938	chr20	46340973	46340974	rs6018652	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	20q13.12		rs6018652-G	0.207471	2E-10		0.0312926	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342055	46342056	rs6094791	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	20q13.12	SULF2	rs6094791-?		9E-9	(additive)			NR [NR] (imputed)	N
938	chr20	46342055	46342056	rs6094791	32564518	Ye J	2020-06-20	Clin Transl Med	Association between herpes simplex virus 1 exposure and the risk of depression in UK Biobank.	Depressive symptoms x herpes simplex 1 infection interaction	2,839 British ancestry individuals	NA	20q13.12	SULF2	rs6094791-?		4E-7	(dominant)			NR [NR] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	6E-10		0.0266456	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	4E-10		0.0281571	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254344	2E-9		0.0270819	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	2E-10		0.027339	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254344	4E-9		0.026652	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254344	5E-10		0.0278572	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254328	4E-14		0.0320356	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	2E-12		0.0298712	[0.022-0.038] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	5E-10		0.0267842	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	2E-9		0.0258832	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
938	chr20	46342196	46342197	rs6090719	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	20q13.12		rs6090719-T	0.254327	7E-9		0.0250313	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
938	chr20	46348224	46348225	rs35164685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs35164685-T	NR	3E-9		0.0187	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
938	chr20	46348224	46348225	rs35164685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.12	NR	rs35164685-T	NR	2E-10		0.0202	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
938	chr20	46357260	46357261	rs73624696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.12		rs73624696-?	NR	5E-9				NR [~ 8900000] (imputed)	N
938	chr20	46360464	46360465	rs66806308	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q13.12		rs66806308-T	0.22	1E-17		8.57	z score increase	Affymetrix [9061022] (imputed)	N
938	chr20	46360464	46360465	rs66806308	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q13.12		rs66806308-T	0.22	1E-10		6.41	z score increase	Affymetrix [9061022] (imputed)	N
938	chr20	46360464	46360465	rs66806308	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q13.12	NR	rs66806308-T	0.2073	1E-14				NR [9056863] (imputed)	N
938	chr20	46360464	46360465	rs66806308	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 53)	19,670 European ancestry individuals	NA	20q13.12		rs66806308-?	NR	2E-8				NR [9705931] (imputed)	N
938	chr20	46360464	46360465	rs66806308	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.12	NR	rs66806308-T	0.208388	2E-11		0.0258225	[0.018-0.033] unit decrease	NR [19129689] (imputed)	N
938	chr20	46364281	46364282	rs6066454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q13.12		rs6066454-?	NR	5E-8				NR [~ 8900000] (imputed)	N
938	chr20	46365635	46365636	rs56218501	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.12		rs56218501-T	0.22	4E-17		8.4	z score increase	Affymetrix [9061022] (imputed)	N
938	chr20	46365635	46365636	rs56218501	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q13.12	NR	rs56218501-T	0.2108	3E-11				NR [9056863] (imputed)	N
938	chr20	46365635	46365636	rs56218501	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	20q13.12		rs56218501-C	0.79	3E-11				NR [NR] (imputed)	N
938	chr20	46365635	46365636	rs56218501	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	20q13.12		rs56218501-C	0.79	7E-17		0.018	mmol/L decrease	NR [NR] (imputed)	N
938	chr20	46365635	46365636	rs56218501	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	20q13.12		rs56218501-C	0.79	5E-15		0.014	% increase	NR [NR] (imputed)	N
938	chr20	46365635	46365636	rs56218501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.12		rs56218501-?	NR	4E-8				NR [~ 8900000] (imputed)	N
938	chr20	46365635	46365636	rs56218501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q13.12		rs56218501-?	NR	3E-8				NR [~ 8900000] (imputed)	N
938	chr20	46372676	46372677	rs2094997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.12	NR	rs2094997-C	NR	3E-9		0.0184	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr20	46372676	46372677	rs2094997	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.12	NR	rs2094997-C	NR	2E-9		0.0187	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr20	46375494	46375495	rs6018666	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	20q13.12	SULF2	rs6018666-C	NR	9E-6		2.09401	[1.2-2.99] unit increase	Illumina [NR] (imputed)	N
938	chr20	46392064	46392065	rs6018677	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.12	NR	rs6018677-G	0.4843	1E-8	(ASMTL)	0.007591	NR unit decrease	Illumina [1671387] (imputed)	N
938	chr20	46397474	46397475	rs62200258	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	20q13.12	SULF2	rs62200258-G	0.332	8E-6		0.614	[0.34-0.88] unit increase	Illumina [9520174] (imputed)	N
939	chr20	46400712	46400713	rs4810685	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	20q13.12	SULF2	rs4810685-C	NR	7E-6	(earlier onset)			Perlegen [429981]	N
939	chr20	46425575	46425576	rs13038095	20173747	Ellinor PT	2010-02-21	Nat Genet	Common variants in KCNN3 are associated with lone atrial fibrillation.	Atrial fibrillation	1,335 European ancestry cases, 12,844 European ancestry controls	1,164 European ancestry cases, 3,607 European ancestry controls	20q13.12	NR	rs13038095-?	NR	2E-7		1.47	[1.39-1.54]	Affymetrix, Illumina [~ 2500000] (imputed)	N
939	chr20	46455303	46455304	rs6012281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	20q13.13		rs6012281-G	0.743766	9E-9		0.0253801	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
939	chr20	46455303	46455304	rs6012281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	20q13.13		rs6012281-G	0.743766	5E-8		0.0238529	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
939	chr20	46455303	46455304	rs6012281	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	20q13.13		rs6012281-G	0.743766	2E-8		0.0253925	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
939	chr20	46471357	46471358	rs115416341	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	20q13.13	SULF2	rs115416341-T	NR	2E-6		0.276	[0.16-0.39] unit increase	Illumina [6319684] (imputed)	N
939	chr20	46473437	46473438	rs6122625	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x air pollution interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	20q13.13	NR	rs6122625-?	NR	6E-8				NR [6212909] (imputed)	N
939	chr20	46476079	46476080	rs115292007	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	20q13.13		rs115292007-?	NR	6E-6		0.21	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
939	chr20	46476142	46476143	rs3859588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.13		rs3859588-T	0.782746	2E-8		0.0263887	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
939	chr20	46476142	46476143	rs3859588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	20q13.13		rs3859588-T	0.782746	1E-8		0.0268084	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
939	chr20	46476142	46476143	rs3859588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	20q13.13		rs3859588-T	0.782746	5E-9		0.0266715	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
939	chr20	46476142	46476143	rs3859588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	20q13.13		rs3859588-T	0.782746	1E-8		0.0260408	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
939	chr20	46476142	46476143	rs3859588	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	20q13.13		rs3859588-T	0.782746	2E-8		0.0261536	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
939	chr20	46476142	46476143	rs3859588	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.13	SULF2	rs3859588-T	0.782253	1E-8		0.0133561	[0.0088-0.0179] unit increase	Affymetrix [NR] (imputed)	N
939	chr20	46476142	46476143	rs3859588	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.13	SULF2	rs3859588-T	0.782241	1E-9		0.0146912	[0.01-0.0194] unit increase	Affymetrix [NR] (imputed)	N
940	chr20	46542123	46542124	rs7269833	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	20q13.13		rs7269833-G	0.1855	2E-6		1.346	[1.19-1.523]	Affymetrix [7975321] (imputed)	N
940	chr20	46542123	46542124	rs7269833	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in dyslipidemia	1,039 Korean ancestry cases, 19,727 Korean ancestry controls	NA	20q13.13		rs7269833-G	0.1855	9E-6		1.28	[1.148-1.42699999999999]	Affymetrix [7975321] (imputed)	N
940	chr20	46580633	46580634	rs2664588	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	20q13.13	SULF2, LINC01522	rs2664588-T	0.438	2E-6		0.019	[0.011-0.027] unit increase	Illumina [7358575] (imputed)	N
940	chr20	46588847	46588848	rs6066569	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	20q13.13	NR	rs6066569-T		9E-6		0.1173	[0.066-0.169] unit increase	Illumina [12770451] (imputed)	N
940	chr20	46617945	46617946	rs55886168	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Nucleus accumbens volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	20q13.13	LINC01522	rs55886168-T	NR	6E-8	(right hemisphere)	79.33	mm3 increase	Illumina [2711511] (imputed)	N
941	chr20	46668988	46668989	rs1325765	25562672	Byrne EM	2014-12-09	J Clin Psychiatry	Seasonality shows evidence for polygenic architecture and genetic correlation with schizophrenia and bipolar disorder.	Seasonality	3,269 European ancestry individuals	887 Old order Amish individuals	20q13.13	MIR1204, PVT1	rs1325765-T	NR	2E-6		0.83	[0.50-1.16] unit decrease	Affymetrix, Illumina [2354422] (imputed)	N
941	chr20	46759302	46759303	rs645580	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	20q13.13	intergenic	rs645580-A	0.27	7E-6		0.453	[0.26-0.65] unit decrease	Illumina [6380737] (imputed)	N
941	chr20	46761256	46761257	rs6094982	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	20q13.13	LOC105372640	rs6094982-A	0.04	3E-8		2.09	[1.61-2.70]	Affymetrix, Illumina [NR] (imputed)	N
941	chr20	46779234	46779235	rs11086243	21441931	Okamoto K	2011-03-27	Nat Genet	Common variation in GPC5 is associated with acquired nephrotic syndrome.	Nephrotic syndrome (acquired)	195 Japanese ancestry cases, 1,546 Japanese ancestry controls	662 Japanese ancestry cases, 4,919 Japanese ancestry controls	20q13.13	SULF2, PREX1	rs11086243-T	0.23	3E-6		1.37	[1.20-1.57]	Perlegen [205203]	N
942	chr20	46801223	46801224	rs62202398	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		20q13.13	intergenic	rs62202398-?	0.06	9E-6		0.15	[0.091-0.209] unit decrease	Illumina [4058415] (imputed)	N
942	chr20	46801666	46801667	rs228218	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	20q13.13	NR	rs228218-G	NR	3E-6	(EA)	2.324	[1.632-3.311]	Illumina [34985077] (imputed)	N
942	chr20	46801666	46801667	rs228218	27018472	Leslie EJ	2016-04-07	Am J Hum Genet	A Genome-wide Association Study of Nonsyndromic Cleft Palate Identifies an Etiologic Missense Variant in GRHL3.	Cleft palate	38 European ancestry cases, 835 European ancestry controls, 21 Hispanic cases, 626 Hispanic controls, 2 Asian ancestry cases, 161 Asian ancestry controls, 38 Indian ancestry controls, 15 Sub-Saharan African ancestry cases, 2 African American cases, 68 Sub-Saharan African ancestry controls, 5 African American controls, 1 African control, 4 controls	246 European ancestry cases, 1,685 European ancestry controls	20q13.13	NR	rs228218-G	NR	3E-6		2.32	[1.63-3.31]	Illumina [34985077] (imputed)	N
942	chr20	46832799	46832800	rs117184659	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.13	intergenic	rs117184659-A	0.0108566537098449	3E-6	(G_Ruminococcus_HB)	1.6388	[0.95-2.33] unit decrease	Illumina [7711310] (imputed)	N
942	chr20	46835158	46835159	rs77158873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.13	NR	rs77158873-C	0.01394	6E-9	(APOA1)	1.939	NR unit increase	Illumina [1671387] (imputed)	N
942	chr20	46835158	46835159	rs77158873	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.13	NR	rs77158873-C	0.01394	3E-8	(APOC1)	0.03837	NR unit increase	Illumina [1671387] (imputed)	N
942	chr20	46869046	46869047	rs226836	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	20q13.13	NR	rs226836-G		8E-6		0.1092	[0.061-0.157] SD units increase	NR [10700000] (imputed)	N
942	chr20	46883130	46883131	rs6090818	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	20q13.13	Intergenic	rs6090818-T	0.803921429	3E-7		0.21966	unit increase	Illumina [6969139] (imputed)	N
942	chr20	46883130	46883131	rs6090818	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	20q13.13	NR	rs6090818-?		2E-6				Illumina [up to 6969139] (imputed)	N
943	chr20	46945563	46945564	rs192511906	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium M clostridioforme abundance in stool	5,959 Finnish ancestry individuals	NA	20q13.13		rs192511906-C	0.0124558	7E-9		0.21068	[0.14-0.28] unit increase	Illumina [7980478] (imputed)	N
943	chr20	46949148	46949149	rs114241858	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	20q13.13	LINC01522, LINC00494	rs114241858-C	0.055	7E-6		1.71	[1.32-2.22]	Affymetrix [up to 27494467] (imputed)	N
944	chr20	47088153	47088154	rs13043694	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs13043694-A		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47088153	47088154	rs13043694	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs13043694-A		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47088199	47088200	rs4810796	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4810796-A		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47088199	47088200	rs4810796	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4810796-A		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47088731	47088732	rs910191	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs910191-A		2E-6				Illumina [2373249] (imputed)	N
944	chr20	47088731	47088732	rs910191	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs910191-A		2E-6				Illumina [2373249] (imputed)	N
944	chr20	47089524	47089525	rs4402823	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4402823-T		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47089524	47089525	rs4402823	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4402823-T		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47089536	47089537	rs4458264	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4458264-T		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47089536	47089537	rs4458264	23527680	Ebejer JL	2013-04-01	Twin Res Hum Genet	Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits.	Attention deficit hyperactivity disorder (combined symptoms)	1,851 individuals	155 individuals	20q13.13	NR	rs4458264-T		3E-6				Illumina [2373249] (imputed)	N
944	chr20	47124953	47124954	rs144394173	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.13	Intergenic	rs144394173-T	0.998	4E-6	(AA)	1.569	NR unit increase	Illumina [NR] (imputed)	N
944	chr20	47149606	47149607	rs60716365	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	20q13.13	RNU7-144P	rs60716365-A	0.0025	5E-6		1.506	[0.86-2.15] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
944	chr20	47149606	47149607	rs60716365	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	20q13.13	RNU7-144P	rs60716365-A	0.0025	5E-6		1.506	[0.86-2.15] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
945	chr20	47190289	47190290	rs73909637	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	20q13.13	PREX1	rs73909637-A	0.9975	4E-6		1.5157	[0.87-2.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
945	chr20	47190289	47190290	rs73909637	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	20q13.13	PREX1	rs73909637-A	0.9975	4E-6		1.5157	[0.87-2.16] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
945	chr20	47193718	47193719	rs4809706	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	20q13.13	intergenic	rs4809706-A	0.6273	2E-7	(model 1)	1.1127183	[1.03-1.19]	Illumina [11601089] (imputed)	N
945	chr20	47193718	47193719	rs4809706	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	20q13.13	intergenic	rs4809706-A	0.3727	3E-8	(model 2)	1.1267606	[1.04-1.21]	Illumina [11601089] (imputed)	N
945	chr20	47226564	47226565	rs4810833	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20q13.13		rs4810833-G	NR	4E-13		0.0146	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
945	chr20	47227976	47227977	rs16993962	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	20q13.13	NR	rs16993962-?		8E-6	(EA)			Illumina [~ 5140000] (imputed)	N
945	chr20	47230834	47230835	rs73135714	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	20q13.13	NR	rs73135714-?		6E-6	(EA)			Illumina [~ 5140000] (imputed)	N
945	chr20	47241357	47241358	rs2664570	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	20q13.13	NR	rs2664570-?		9E-6	(EA)			Illumina [~ 5140000] (imputed)	N
945	chr20	47253149	47253150	rs2664521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs2664521-?	NR	1E-14				NR [~ 8900000] (imputed)	N
945	chr20	47267245	47267246	rs71351936	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	PREX1	rs71351936-T	0.1594	3E-7		0.0466	[0.029-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
945	chr20	47276639	47276639	rs11086257	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	20q13.13		rs11086257-A	0.732939	4E-8		0.0412369	[0.026-0.057] increase	Affymetrix [NR]	N
945	chr20	47304305	47304306	rs729663	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.13	NR	rs729663-?	NR	5E-38				Affymetrix [NR]	N
945	chr20	47308797	47308798	rs6095241	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	20q13.13	PREX1	rs6095241-A	0.4504	3E-10		0.167	mmHg decrease	Illumina [242296]	N
945	chr20	47309715	47309716	rs6019378	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.13	PREX1	rs6019378-C		2E-11		0.156	unit increase	Affymetrix [at least 2696785] (imputed)	N
946	chr20	47319141	47319142	rs4810864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13	PREX1	rs4810864-C	0.460053	3E-10		0.01403187	[0.0097-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
946	chr20	47321448	47321449	rs2869669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs2869669-C	0.467015	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
946	chr20	47326439	47326440	rs6019386	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q13.13	NR	rs6019386-G	0.460585	4E-13		0.01362	[0.0099-0.0173] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
946	chr20	47335566	47335567	rs926630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.13	PREX1	rs926630-C	0.392586	9E-10		0.014094379	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
946	chr20	47339741	47339742	rs968478	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.13	PREX1	rs968478-G	0.396165	7E-10		0.013999772	[0.0096-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
946	chr20	47339741	47339742	rs968478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.13	NR	rs968478-G	0.397325	3E-14		0.014727	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
946	chr20	47339968	47339969	rs8124661	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.13	PREX1	rs8124661-A	0.204236	4E-11		0.018272502	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47340116	47340117	rs6066825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20q13.13		rs6066825-G	NR	3E-13		0.0943	[0.069-0.12] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
946	chr20	47340116	47340117	rs6066825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	20q13.13		rs6066825-G	NR	4E-10		0.0606	[0.042-0.08] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
946	chr20	47340116	47340117	rs6066825	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	20q13.13		rs6066825-A	0.634792	1E-7		1.1387	NR	Affymetrix [7846216] (imputed)	N
946	chr20	47340116	47340117	rs6066825	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q13.13		rs6066825-A	0.634792	6E-8		1.124	[1.078-1.173]	Affymetrix [7846216] (imputed)	N
946	chr20	47340116	47340117	rs6066825	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20q13.13	PREX1	rs6066825-A	NR	8E-12	(East Asian)	1.1	[1.07-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
946	chr20	47340116	47340117	rs6066825	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.13	NR	rs6066825-A	0.65	4E-17		1.1	[1.08-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
946	chr20	47340116	47340117	rs6066825	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20q13.13	PREX1	rs6066825-A	0.71	4E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
946	chr20	47340116	47340117	rs6066825	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.13	PREX1	rs6066825-A	0.6448	6E-15		1.07	[1.06-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
946	chr20	47340116	47340117	rs6066825	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	20q13.13	NR	rs6066825-A	0.622	2E-6	(EA)	1.06	[1.03-1.09]	Affymetrix, Illumina [12931465] (imputed)	N
946	chr20	47340116	47340117	rs6066825	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	20q13.13	PREX1	rs6066825-A	0.64	4E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
946	chr20	47343058	47343059	rs6063312	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	20q13.13	PREX1	rs6063312-?	NR	2E-6	(RW)			Affymetrix [70897]	N
946	chr20	47343459	47343460	rs2281288	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs2281288-G	0.479072	4E-13				Affymetrix, Illumina [23472807] (imputed)	N
946	chr20	47355008	47355009	rs6066835	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	20q13.13	PREX1	rs6066835-C	0.09	2E-6		1.2	[NR]	Illumina [33000000] (imputed)	N
946	chr20	47355008	47355009	rs6066835	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	20q13.13	PREX1	rs6066835-C	0.083	1E-13		1.26	[NR]	Illumina [at least 7182761] (imputed)	N
946	chr20	47365804	47365805	rs144582521	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20q13.13		rs144582521-C	NR	4E-13		0.0736	[0.054-0.093] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
946	chr20	47375301	47375302	rs560564311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.13	PREX1	rs560564311-C	0.00549599999999995	2E-14		0.13233589	[0.098-0.166] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47375301	47375302	rs560564311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.13	PREX1	rs560564311-C	0.00549	2E-9		0.1041133	[0.07-0.138] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47375301	47375302	rs560564311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.13	PREX1	rs560564311-C	0.005494	2E-9		0.10404585	[0.07-0.138] unit increase	Affymetrix [93095623] (imputed)	N
946	chr20	47379810	47379811	rs2426087	23496005	Luca G	2013-03-18	J Sleep Res	Clinical, polysomnographic and genome-wide association analyses of narcolepsy with cataplexy: a European Narcolepsy Network study.	Narcolepsy with cataplexy	585 European ancestry cases	387 European ancestry cases	20q13.13	NR	rs2426087-?	NR	2E-6	(SE)	10.463	[NR] unit increase	NR [NR]	N
946	chr20	47384300	47384301	rs149257976	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q13.13		rs149257976-A	NR	2E-11		0.0685	[0.049-0.088] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q13.13	PREX1	rs149257976-A	0.013716	1E-16		0.07870209	[0.06-0.097] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.13	PREX1	rs149257976-A	0.013713	3E-10		0.06021139	[0.042-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.13	PREX1	rs149257976-A	0.013711	1E-19		0.08650404	[0.068-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs149257976-A	0.0132255	3E-19				Affymetrix, Illumina [24649327] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q13.13	NR	rs149257976-A	0.013562	3E-22		0.077533	[0.062-0.093] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs149257976-A	0.0132947	3E-23				Affymetrix, Illumina [23114412] (imputed)	N
946	chr20	47384300	47384301	rs149257976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q13.13	NR	rs149257976-A	0.013634	3E-26		0.088123	[0.072-0.104] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
946	chr20	47384300	47384301	rs149257976	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.13		rs149257976-?	NR	3E-16				NR [~ 8900000] (imputed)	N
946	chr20	47391483	47391484	rs75240985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	20q13.13		rs75240985-A	0.090179	2E-8		0.0339236	[0.022-0.046] unit increase	Illumina [13479091] (imputed)	N
946	chr20	47408413	47408414	rs2208589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.13		rs2208589-?	NR	5E-10				NR [~ 8900000] (imputed)	N
946	chr20	47411148	47411149	rs80346118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q13.13		rs80346118-A	NR	7E-12		0.0206	[0.015-0.026] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
946	chr20	47411148	47411149	rs80346118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.13		rs80346118-?	NR	2E-17				NR [~ 8900000] (imputed)	N
946	chr20	47411148	47411149	rs80346118	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20q13.13	PREX1	rs80346118-A	0.15	1E-12		0.273	[0.19-0.35] unit decrease	Affymetrix [~ 9800000] (imputed)	N
946	chr20	47411455	47411456	rs2208590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.13		rs2208590-T	NR	3E-12		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
946	chr20	47411455	47411456	rs2208590	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs2208590-T	NR	1E-10		6.455	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
946	chr20	47413078	47413079	rs6095298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.13	Intergenic	rs6095298-A	0.5674	9E-10	(MTAG)	0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
946	chr20	47413078	47413079	rs6095298	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	20q13.13	Intergenic	rs6095298-A	0.5674	4E-8		0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
946	chr20	47413078	47413079	rs6095298	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	PREX1	rs6095298-A	NR	4E-11		0.01951757	[0.014-0.025] unit decrease	Affymetrix [NR]	N
946	chr20	47415897	47415898	rs750085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs750085-?	NR	3E-8				NR [~ 8900000] (imputed)	N
946	chr20	47420708	47420709	rs78473917	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q13.13		rs78473917-C	NR	3E-13		0.0223	[0.016-0.028] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
946	chr20	47422576	47422577	rs6066861	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	PREX1	rs6066861-A	NR	5E-10		6.223	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
946	chr20	47422576	47422577	rs6066861	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	PREX1	rs6066861-A	NR	3E-10		0.020899374	[0.014-0.027] unit decrease	Affymetrix [NR]	N
946	chr20	47433048	47433049	rs2008603	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q13.13	PREX1	rs2008603-?	NR	3E-8		0.0413174	[0.027-0.056] unit decrease	Illumina [4804024] (imputed)	N
946	chr20	47433514	47433515	rs745086	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	PREX1	rs745086-A	NR	3E-8		5.521	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
946	chr20	47433514	47433515	rs745086	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	PREX1	rs745086-A	NR	3E-11		0.019503249	[0.014-0.025] unit decrease	Affymetrix [NR]	N
946	chr20	47436645	47436646	rs34326966	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.13		rs34326966-A	NR	2E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
946	chr20	47436645	47436646	rs34326966	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.13	PREX1	rs34326966-A	0.340508	4E-18		0.020257266	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47437211	47437212	rs4810881	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs4810881-G	0.311568	1E-25				Affymetrix, Illumina [24246363] (imputed)	N
946	chr20	47440219	47440220	rs4809728	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.13	PREX1	rs4809728-G	0.341007	7E-12		0.016282996	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
946	chr20	47445578	47445579	rs1885290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.13		rs1885290-?	NR	2E-17				NR [~ 8900000] (imputed)	N
946	chr20	47447869	47447870	rs7267607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.13	NR	rs7267607-C	0.341038	1E-22		0.019896	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
946	chr20	47447959	47447960	rs720727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.13	PREX1	rs720727-T	0.340789	2E-18		0.020659843	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr20	47450062	47450063	rs34417222	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	20q13.13	NR	rs34417222-C	0.265408	5E-14		0.053652246	[0.04-0.068] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
947	chr20	47450062	47450063	rs34417222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.13		rs34417222-T	0.30939	4E-19		0.021591	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr20	47450062	47450063	rs34417222	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.13		rs34417222-T	0.309363	4E-11		0.016023964	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
947	chr20	47450062	47450063	rs34417222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.13	NR	rs34417222-T	0.308518	2E-26		0.020974	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
947	chr20	47450062	47450063	rs34417222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs34417222-T	0.285115	3E-21				Affymetrix, Illumina [20825802] (imputed)	N
947	chr20	47450062	47450063	rs34417222	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	20q13.13	NA	rs34417222-T	0.303	7E-11		0.0136	[0.0095-0.0177] unit decrease	NR [~ 27400000] (imputed)	N
947	chr20	47450062	47450063	rs34417222	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs34417222-T	NR	3E-14		7.586	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
947	chr20	47451104	47451104	rs35432642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.13		rs35432642-CT	NR	3E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
947	chr20	47456855	47456856	rs56313611	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	20q13.13	intergenic	rs56313611-T	0.135	2E-8		0.0524	[0.034-0.071] unit decrease	NR [8041861] (imputed)	N
947	chr20	47473037	47473038	rs2145839	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.13	NR	rs2145839-?	NR	5E-8				Affymetrix [NR]	N
947	chr20	47473037	47473038	rs2145839	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs2145839-T	NR	4E-9		5.897	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
947	chr20	47473037	47473038	rs2145839	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	PREX1	rs2145839-T	NR	2E-11		0.020286683	[0.014-0.026] unit decrease	Affymetrix [NR]	N
947	chr20	47477705	47477706	rs6012542	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	PREX1	rs6012542-T	NR	8E-12		0.021211512	[0.015-0.027] unit increase	Affymetrix [NR]	N
947	chr20	47481725	47481726	rs67021138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.13	Intergenic	rs67021138-T	0.6814	9E-10	(MTAG)	0.0086	[0.0059-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
947	chr20	47492713	47492714	rs143458892	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs143458892-?	NR	2E-8				NR [~ 8900000] (imputed)	N
947	chr20	47493893	47493894	rs34116853	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.13	Intergenic	rs34116853-A	0.6805	9E-14	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
947	chr20	47493893	47493894	rs34116853	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.13	Intergenic	rs34116853-A	0.6805	1E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
947	chr20	47493893	47493894	rs34116853	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.13	Intergenic	rs34116853-A	0.6796	1E-12	(MTAG)	0.0125	[0.009-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
947	chr20	47495655	47495656	rs6019483	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.13	NA	rs6019483-A	0.1743	4E-14		0.0175	[0.013-0.022] unit decrease	NR [~ 27400000] (imputed)	N
947	chr20	47495766	47495767	rs4809731	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	20q13.13	ARFGEF2	rs4809731-G	0.13465400000000005	3E-8		0.024449	[0.016-0.033] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
947	chr20	47495766	47495767	rs4809731	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q13.13	ARFGEF2	rs4809731-G	0.130671	2E-8		0.021703	[0.014-0.029] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
947	chr20	47495793	47495794	rs4810883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.13		rs4810883-T	0.329974	3E-10		0.014926922	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
947	chr20	47495793	47495794	rs4810883	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs4810883-T	0.302151	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
947	chr20	47495793	47495794	rs4810883	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.13	NR	rs4810883-T	0.329032	3E-13		0.014533	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
947	chr20	47495793	47495794	rs4810883	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	ARFGEF2	rs4810883-T	NR	1E-8		5.69	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
947	chr20	47498116	47498117	rs112852122	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.13	ARFGEF2	rs112852122-G	0.84206	3E-12		0.0133703	[0.0096-0.0171] unit increase	Affymetrix [12370749]	N
947	chr20	47498116	47498117	rs112852122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.13	NR	rs112852122-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
947	chr20	47498116	47498117	rs112852122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.13		rs112852122-?	NR	2E-15				NR [~ 8900000] (imputed)	N
947	chr20	47498969	47498970	rs3092395	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	20q13.13	Intergenic	rs3092395-T	0.62	4E-6		0.5884	[0.34-0.84] unit decrease	Illumina [9520174] (imputed)	N
947	chr20	47499120	47499121	rs6090919	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs6090919-T	NR	3E-10		0.019793846	[0.014-0.026] unit increase	Affymetrix [NR]	N
947	chr20	47499169	47499170	rs3092566	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	ARFGEF2	rs3092566-T	NR	3E-11		6.631	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
947	chr20	47499169	47499170	rs3092566	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs3092566-T	NR	4E-12		0.021914618	[0.016-0.028] unit increase	Affymetrix [NR]	N
947	chr20	47500403	47500404	rs6125486	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs6125486-T	NR	2E-8		0.018033838	[0.012-0.024] unit decrease	Affymetrix [NR]	N
947	chr20	47508076	47508077	rs111235329	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q13.13	NR	rs111235329-T	0.248992	3E-8		0.0440965	[0.029-0.06] unit increase	Affymetrix [17914406] (imputed)	N
947	chr20	47510490	47510491	rs17445665	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	20q13.13	NR	rs17445665-T	0.2788	3E-8		0.06768256	[0.044-0.092] z score increase	NR [1977400] (imputed)	N
947	chr20	47515276	47515277	rs151282715	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	20q13.13	NR	rs151282715-?	NR	5E-6		0.6367	[0.33-0.94] unit decrease	Illumina [at least 560000] (imputed)	N
947	chr20	47517793	47517794	rs2024594	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.13	NR	rs2024594-G	0.485	5E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
947	chr20	47517895	47517896	rs2024595	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs2024595-A	NR	4E-11		0.01953442	[0.014-0.025] unit decrease	Affymetrix [NR]	N
947	chr20	47517895	47517896	rs2024595	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	20q13.13	NR	rs2024595-A	0.587	7E-7		0.018	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
947	chr20	47523485	47523486	rs7348804	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	ARFGEF2	rs7348804-C	0.6163	1E-7		0.0375	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
947	chr20	47523731	47523732	rs6122735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.13		rs6122735-T	0.3943	1E-8	(conditional-joint)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
947	chr20	47523864	47523865	rs6095357	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q13.13	NR	rs6095357-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
947	chr20	47525670	47525671	rs13037942	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.13	ARFGEF2	rs13037942-C	NR	6E-10		0.0221721	[0.015-0.029] unit increase	Affymetrix [323123] (imputed)	N
947	chr20	47526006	47526007	rs6019512	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs6019512-T	NR	6E-15		0.023274967	[0.017-0.029] unit decrease	Affymetrix [NR]	N
947	chr20	47526359	47526360	rs1997850	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	20q13.13	NR	rs1997850-G	NR	1E-7		0.01079	[0.0068-0.0148] unit increase	Illumina [~ 540852]	N
947	chr20	47528807	47528808	rs13044144	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs13044144-C	NR	1E-13		0.024873432	[0.018-0.031] unit increase	Affymetrix [NR]	N
947	chr20	47531285	47531286	rs6012558	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.13	ARFGEF2	rs6012558-A	NR	2E-9		0.0188967	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
947	chr20	47531285	47531286	rs6012558	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Driving (hours per day)	408,815 European ancestry individuals	NA	20q13.13	NR	rs6012558-?		2E-10		0.0144779	[0.01-0.019] unit increase	Affymetrix [19400418] (imputed)	N
947	chr20	47531285	47531286	rs6012558	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.13		rs6012558-?	NR	1E-8				NR [~ 8900000] (imputed)	N
947	chr20	47531285	47531286	rs6012558	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs6012558-A	NR	2E-13		7.356	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
947	chr20	47531285	47531286	rs6012558	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	20q13.13	ARFGEF2	rs6012558-A	0.412	3E-6		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr20	47531285	47531286	rs6012558	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.13	ARFGEF2	rs6012558-A	NR	3E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr20	47531285	47531286	rs6012558	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.13	ARFGEF2	rs6012558-A	0.412	2E-9		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
947	chr20	47531640	47531640	rs201764793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.13	NR	rs201764793-TTTC	0.34217	2E-10		0.00514038	[0.0034-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
947	chr20	47531640	47531640	rs201764793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.13	NR	rs201764793-TTTC	0.34222699999999995	4E-9		0.00747284	[0.0051-0.0099] unit increase	Affymetrix [16582621] (imputed)	N
947	chr20	47531640	47531640	rs201764793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.13	NR	rs201764793-TTTC	0.34217	2E-14		0.00713314	[0.0052-0.0091] unit increase	Affymetrix [16582965] (imputed)	N
947	chr20	47531640	47531640	rs201764793	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.13	NR	rs201764793-TTTC	0.34222699999999995	7E-13		0.00920316	[0.0066-0.0118] unit increase	Affymetrix [16582614] (imputed)	N
947	chr20	47532535	47532536	rs6095360	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	20q13.13	NR	rs6095360-G	0.324609	9E-7		4.91741	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
947	chr20	47532535	47532536	rs6095360	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	20q13.13	ARFGEF2, CSE1L, DDX27, PREX1, STAU1, ZNFX1, SHANK3	rs6095360-A	0.693	7E-10		6.16	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
947	chr20	47532535	47532536	rs6095360	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ARFGEF2	rs6095360-A	NR	7E-16		0.025381483	[0.019-0.032] unit decrease	Affymetrix [NR]	N
947	chr20	47532998	47532999	rs4810894	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.13		rs4810894-A	0.3706	4E-9		0.0085	[0.0056-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
947	chr20	47532998	47532999	rs4810894	30034349	Lin E	2018-07-06	Front Psychiatry	A Deep Learning Approach for Predicting Antidepressant Response in Major Depression Using Clinical and Genetic Biomarkers.	Response to selective serotonin reuptake inhibitors in depression	257 Taiwanese ancestry responders, 164 Taiwanese ancestry non-responders	NA	20q13.13	PREX1	rs4810894-?	NR	3E-6		2.7	[1.78-4.10]	Illumina [4241701] (imputed)	N
947	chr20	47535297	47535298	rs4810896	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Depression	105,739 European ancestry individuals, 16,471 European ancestry major depressive disorder cases, 58,835 European ancestry controls	368,890 European ancestry individuals	20q13.13	NR	rs4810896-A	NR	4E-9		5.8794484	[NR] z score decrease	Affymetrix [up to 6544862] (imputed)	N
947	chr20	47541516	47541517	rs6019535	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs6019535-A	NR	3E-17		8.436	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
947	chr20	47541599	47541600	rs6012564	24489884	Mick E	2014-01-01	PLoS One	Genome-wide association study of proneness to anger.	Anger	8,747 European ancestry individuals	NA	20q13.13	ARFGEF2, STAU1, CSE1L	rs6012564-G	0.406	7E-6	(Temperament)	0.12	[NR] unit increase	Affymetrix [677643]	N
947	chr20	47543603	47543604	rs6019537	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs6019537-A	NR	4E-17		8.425	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
947	chr20	47552466	47552467	rs189331311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20q13.13	ARFGEF2	rs189331311-C	NR	5E-8		0.0198049	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
948	chr20	47590563	47590564	rs1115535	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs1115535-T	NR	4E-11		6.593	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
948	chr20	47594415	47594416	rs140589268	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	20q13.13		rs140589268-T	0.06903	3E-7		36.11655	z score increase	NR [6814003]	N
948	chr20	47598496	47598497	rs6012575	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	20q13.13		rs6012575-?	NR	1E-8		0.0157	unit increase	NR [NR]	N
948	chr20	47618834	47618835	rs6095391	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	20q13.13	NR	rs6095391-A	NR	3E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
948	chr20	47627094	47627095	rs6095395	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q13.13		rs6095395-G	0.3	1E-9		6.05	z score increase	Affymetrix [9061022] (imputed)	N
948	chr20	47648855	47648856	rs1022688	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	20q13.13	PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, ZNFX1-AS1, SNORD12C, SNORD12B, SNORD12	rs1022688-G	0.669916	3E-9		0.012942266	[0.0087-0.0172] unit decrease	NR [NR] (imputed)	N
948	chr20	47648855	47648856	rs1022688	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	20q13.13	PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, ZNFX1-AS1, SNORD12C, SNORD12B, SNORD12	rs1022688-G	0.67	3E-8		0.0048	[0.003-0.0066] unit decrease	NR [NR] (imputed)	N
948	chr20	47652253	47652254	rs707533	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs707533-?	NR	7E-11				NR [NR]	N
948	chr20	47652253	47652254	rs707533	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on highest math class (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs707533-?	NR	1E-10				NR [NR]	N
948	chr20	47652253	47652254	rs707533	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on educational attainment (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs707533-?	NR	9E-11				NR [NR]	N
948	chr20	47666026	47666027	rs6090940	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	20q13.13	NR	rs6090940-T	0.322627332500478	3E-8		0.017017476	[0.011-0.023] unit increase	NR [NR]	N
948	chr20	47668144	47668145	rs2869693	31299468	Condreay LD	2019-06-29	Respir Med	Genetic effects on efficacy to fluticasone propionate/salmeterol treatment in COPD.	Response to fluticasone propionate/salmeterol in chronic obstructive pulmonary disease	530 European, African, African American, South East Asian, East Asian, American Indian/Alaskan Native, Mixed race, Arabic/North African, Central/South Asian or Japanese Asian ancestry treated cases, 658 European, African, African American, South East Asian, East Asian, American Indian/Alaskan Native, Mixed race, Arabic/North African, Central/South Asian or Japanese Asian ancestry untreated cases	NA	20q13.13	CSE1L	rs2869693-?	NR	1E-6				Affymetrix [> 10000000] (imputed)	N
948	chr20	47675175	47675176	rs2064853	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	CSE1L	rs2064853-A	NR	3E-14		7.616	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
948	chr20	47675175	47675176	rs2064853	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	CSE1L	rs2064853-A	NR	3E-19		0.026579602	[0.021-0.032] unit increase	Affymetrix [NR]	N
948	chr20	47678023	47678027	rs113315451	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	20q13.13	CSE1L	rs113315451-A	0.4254	1E-8	(Adults)	5.707	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
948	chr20	47678023	47678027	rs113315451	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	20q13.13	CSE1L	rs113315451-A	0.4254	1E-8		5.707	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
948	chr20	47678200	47678201	rs6095417	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	CSE1L	rs6095417-A	NR	1E-14		7.724	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
948	chr20	47681881	47681882	rs6063349	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to citalopram or escitalopram and depression	2,005 European ancestry non-responder cases, 192,083 European ancestry healthy controls	NA	20q13.13	CSE1L	rs6063349-?		7E-7		1.183432	[1.11-1.27]	Illumina [~ 12000000] (imputed)	N
948	chr20	47685814	47685815	rs6019624	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.13	NR	rs6019624-?	NR	1E-6		0.0085344	[0.0051-0.012] unit increase	Affymetrix [805426] (imputed)	N
948	chr20	47691429	47691430	rs35214127	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	20q13.13		rs35214127-T	0.040955	7E-6		0.077351	[0.044-0.111] unit increase	Affymetrix [15580782] (imputed)	N
948	chr20	47701023	47701024	rs2075677	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	20q13.13	NR	rs2075677-G	0.238397871192685	2E-14		0.018964553	[0.014-0.024] unit increase	NR [NR]	N
948	chr20	47701023	47701024	rs2075677	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q13.13	CSE1L	rs2075677-A	0.7603	2E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
948	chr20	47701588	47701589	rs2075679	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	20q13.13	NR	rs2075679-G	NR	2E-7		0.01083	[0.0068-0.0149] unit increase	Illumina [~ 540852]	N
948	chr20	47701588	47701589	rs2075679	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	20q13.13	NR	rs2075679-T	0.5743	4E-10		0.0117	[0.008-0.0154] unit decrease	Illumina [NR] (imputed)	N
948	chr20	47705495	47705496	rs1538482	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on cognitive performance (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs1538482-?	NR	9E-11				NR [NR]	N
948	chr20	47705495	47705496	rs1538482	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.13	NR	rs1538482-?	NR	8E-6	(male)	0.12586	[0.071-0.181] unit decrease	Affymetrix [7794483] (imputed)	N
948	chr20	47705495	47705496	rs1538482	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.13	NR	rs1538482-?	NR	3E-10		0.14468	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
948	chr20	47705495	47705496	rs1538482	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q13.13	NR	rs1538482-T	0.6958	1E-6		0.0177	[0.011-0.025] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
949	chr20	47714369	47714370	rs71351958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.13	Intergenic	rs71351958-T	0.5901	1E-12	(MTAG)	0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
949	chr20	47723126	47723127	rs2426132	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	20q13.13	NR	rs2426132-G	0.444334	1E-20		0.05933499	[0.047-0.072] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
949	chr20	47723126	47723127	rs2426132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.13	Intergenic	rs2426132-C	0.4576	5E-22	(MTAG)	0.0222	[0.018-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
949	chr20	47723126	47723127	rs2426132	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	20q13.13	Intergenic	rs2426132-C	0.4576	4E-21		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
949	chr20	47723126	47723127	rs2426132	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	STAU1	rs2426132-C	NR	3E-17		8.448	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
949	chr20	47723126	47723127	rs2426132	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	STAU1	rs2426132-C	NR	2E-19		0.027756324	[0.022-0.034] unit increase	Affymetrix [NR]	N
949	chr20	47723126	47723127	rs2426132	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	20q13.13	STAU1	rs2426132-?	NR	8E-11		6.493	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
949	chr20	47723126	47723127	rs2426132	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	20q13.13	STAU1	rs2426132-?	NR	2E-7		5.224	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
949	chr20	47727078	47727079	rs11697622	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	20q13.13		rs11697622-?	NR	2E-14				NR [7857346] (imputed)	N
949	chr20	47727896	47727897	rs75200484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	STAU1	rs75200484-A	0.0334	3E-6		0.09	[0.052-0.128] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
949	chr20	47731766	47731767	rs11697370	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	20q13.13	NR	rs11697370-A	NR	7E-8		0.01133	[0.0072-0.0155] unit increase	Illumina [~ 540852]	N
949	chr20	47746973	47746974	rs34841991	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Hedonic well-being	221,575 British ancestry individuals	NA	20q13.13	NR	rs34841991-C	0.24	2E-10		0.022	[0.014-0.03] unit increase	Affymetrix [~ 8600000] (imputed)	N
949	chr20	47750376	47750377	rs6066975	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	20q13.13	NR	rs6066975-?		4E-8				NR [11140414]	N
949	chr20	47750376	47750377	rs6066975	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	20q13.13	NR	rs6066975-A	NR	4E-8		5.471	z score decrease	Affymetrix [10847151] (imputed)	N
949	chr20	47753264	47753265	rs11696888	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	20q13.13		rs11696888-?	NR	1E-9		0.0143	NR unit decrease	NR [4548414] (imputed)	N
949	chr20	47755106	47755107	rs534760666	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	20q13.13	STAU1	rs534760666-T	0.9978	1E-6		0.5336	[0.32-0.75] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
949	chr20	47756443	47756444	rs348302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20q13.13		rs348302-G	NR	7E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
949	chr20	47762248	47762249	rs8122757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.13		rs8122757-?	NR	7E-11				NR [~ 8900000] (imputed)	N
949	chr20	47768987	47768988	rs348258	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	20q13.13	STAU1	rs348258-?	NR	1E-8		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [up to 14113458] (imputed)	N
949	chr20	47770755	47770756	rs2273653	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20q13.13	NR	rs2273653-C	0.405830982158311	4E-11		0.006190459	[0.0044-0.008] unit decrease	NR [NR]	N
949	chr20	47770755	47770756	rs2273653	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	20q13.13	NR	rs2273653-C	0.4059	3E-11		0.0144	[0.01-0.019] unit decrease	Illumina [NR] (imputed)	N
949	chr20	47770755	47770756	rs2273653	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	20q13.13	NR	rs2273653-C	0.4059	3E-9		0.0144	[0.0097-0.0191] unit decrease	Illumina [NR] (imputed)	N
949	chr20	47772263	47772264	rs17450430	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	20q13.13	STAU1	rs17450430-A	0.761	2E-24		0.035	[0.029-0.041] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
949	chr20	47774511	47774512	rs6019663	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q13.13	NR	rs6019663-T	0.293	6E-10		1.041	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
949	chr20	47775685	47775685	rs568311635	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.13	STAU1	rs568311635-TA	0.238091	2E-9		0.015906047	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
949	chr20	47780104	47780105	rs2426139	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q13.13	NR	rs2426139-A	0.3008	5E-8				NR [9056863] (imputed)	N
949	chr20	47786189	47786190	rs348276	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on average household income before tax (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs348276-?	NR	9E-10				NR [NR]	N
949	chr20	47786189	47786190	rs348276	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	20q13.13		rs348276-?	NR	2E-10				NR [NR]	N
949	chr20	47786189	47786190	rs348276	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	20q13.13	STAU1	rs348276-?	NR	5E-9		0.012520961	[0.0083-0.0167] unit increase	NR [7306098]	N
949	chr20	47786189	47786190	rs348276	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	20q13.13	STAU1	rs348276-?	NR	1E-8		5.699	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
949	chr20	47788774	47788775	rs141979783	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	20q13.13		rs141979783-T	0.05224	4E-8		40.01637	z score increase	NR [6814003]	N
949	chr20	47788774	47788775	rs141979783	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	20q13.13	STAU1	rs141979783-?	NR	1E-8		5.708	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
949	chr20	47798663	47798664	rs8118105	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.13	NR	rs8118105-?	NR	4E-6		0.0080467	[0.0046-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
949	chr20	47800828	47800829	rs13041213	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	STAU1	rs13041213-A	NR	7E-12		0.024943719	[0.018-0.032] unit increase	Affymetrix [NR]	N
949	chr20	47806091	47806092	rs3795075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q13.13		rs3795075-A	0.089743	1E-8		0.020327	[0.013-0.027] unit increase	Illumina [13479295] (imputed)	N
949	chr20	47808158	47808159	rs112513025	31299468	Condreay LD	2019-06-29	Respir Med	Genetic effects on efficacy to fluticasone propionate/salmeterol treatment in COPD.	Change in quality of life in response to fluticasone propionate/salmeterol in chronic obstructive pulmonary disease	up to 1,209 European ancestry individuals, up to 136 African, African American, South East Asian, East Asian, American Indian/Alaskan Native, Mixed race, Arabic/North African, Central/South Asian or Japanese Asian ancestry individuals	NA	20q13.13	STAU1	rs112513025-?	NR	1E-9				Affymetrix [> 10000000] (imputed)	N
949	chr20	47817814	47817815	rs13036715	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	20q13.13	NR	rs13036715-A	0.241067	3E-7		5.11717	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
949	chr20	47823440	47823441	rs78387210	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	20q13.13	NR	rs78387210-T	0.092	8E-9		0.023097096	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
949	chr20	47835154	47835155	rs73611371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.13		rs73611371-A	NR	1E-51		0.0262	[0.023-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
949	chr20	47835154	47835155	rs73611371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs73611371-?	NR	1E-76				NR [~ 8900000] (imputed)	N
949	chr20	47840771	47840772	rs6125597	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs6125597-T	NR	5E-12		6.909	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
949	chr20	47840771	47840772	rs6125597	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	DDX27	rs6125597-T	NR	3E-13		0.022382405	[0.016-0.028] unit increase	Affymetrix [NR]	N
950	chr20	47844340	47844341	rs238164	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q13.13	DDX27	rs238164-?	NR	2E-9		0.029781574	[0.02-0.039] unit increase	Illumina [27896057] (imputed)	N
950	chr20	47849215	47849216	rs13038866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.13	NR	rs13038866-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
950	chr20	47866655	47866656	rs6122773	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	ZNFX1	rs6122773-A	NR	8E-9		5.759	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
950	chr20	47881966	47881967	rs1567865	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	20q13.13	ZNFX1	rs1567865-T	0.21	1E-9		0.063	[0.043-0.083] unit increase	Affymetrix, Illumina [2193675] (imputed)	N
950	chr20	47883114	47883115	rs238180	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	ZNFX1	rs238180-A	0.2281	4E-6		0.0374	[0.022-0.053] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	9E-18	(156 ms)	0.082865	[0.063-0.102] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	9E-15	(174 ms)	0.077408	[0.058-0.097] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	8E-17	(166 ms)	0.0818067	[0.062-0.101] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	8E-10	(74 ms)	0.0599427	[0.04-0.08] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-9	(202 ms)	0.0575233	[0.038-0.077] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-22	(142 ms)	0.0910183	[0.072-0.11] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-19	(160 ms)	0.0857936	[0.066-0.105] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-19	(150 ms)	0.0855712	[0.066-0.105] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-17	(164 ms)	0.0824227	[0.063-0.102] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-12	(184 ms)	0.0671488	[0.048-0.087] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	7E-10	(190 ms)	0.0628327	[0.043-0.082] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	6E-10	(192 ms)	0.0618447	[0.042-0.081] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	5E-18	(162 ms)	0.0844944	[0.065-0.104] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	5E-18	(158 ms)	0.0838941	[0.064-0.103] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	4E-20	(110 ms)	0.0886373	[0.069-0.108] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	4E-19	(118 ms)	0.0849607	[0.066-0.104] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	4E-16	(134 ms)	0.0793711	[0.06-0.099] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	4E-13	(176 ms)	0.0726539	[0.053-0.092] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	3E-8	(204 ms)	0.0544577	[0.035-0.074] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	3E-22	(120 ms)	0.0928901	[0.073-0.112] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	3E-15	(88 ms)	0.0763951	[0.057-0.096] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-23	(140 ms)	0.0943852	[0.075-0.114] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-21	(138 ms)	0.0908325	[0.071-0.11] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-19	(112 ms)	0.0869565	[0.067-0.106] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-17	(128 ms)	0.0818454	[0.062-0.101] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-16	(168 ms)	0.0805141	[0.061-0.1] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-15	(170 ms)	0.0779426	[0.058-0.097] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-12	(76 ms)	0.0685294	[0.049-0.088] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-12	(186 ms)	0.0690297	[0.049-0.089] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	2E-11	(182 ms)	0.0661381	[0.047-0.086] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	1E-8	(200 ms)	0.0571981	[0.038-0.077] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	1E-15	(172 ms)	0.0781893	[0.059-0.098] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47884554	47884555	rs59499156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.13	ZNFX1	rs59499156-C	0.916845	1E-11	(188 ms)	0.0665343	[0.047-0.086] unit increase	Affymetrix [10000000] (imputed)	N
950	chr20	47903018	47903019	rs237743	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	20q13.13	ZNFX1	rs237743-A	0.21	1E-20		0.041	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
950	chr20	47915389	47915390	rs237706	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs237706-T	NR	2E-10		6.381	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
950	chr20	47930228	47930229	rs13037209	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	KCNB1	rs13037209-T	0.1411	4E-12		0.0651	[0.047-0.084] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
950	chr20	47933478	47933479	rs381262	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	ZFAS1	rs381262-A	NR	1E-8		5.704	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
950	chr20	47938288	47938288	rs374726866	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.13	KCNB1, RP4-791K14.2	rs374726866-CTCTTT	0.1405	8E-6		0.0443	[0.025-0.064] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
950	chr20	47938625	47938626	rs6067053	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.13	ZFAS1	rs6067053-T	NR	9E-9		0.017730355	[0.012-0.024] unit decrease	Affymetrix [NR]	N
950	chr20	47938629	47938630	rs237727	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	20q13.13	NR	rs237727-A	NR	3E-8		5.562	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
950	chr20	47939662	47939663	rs11906968	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.13	Intergenic	rs11906968-A	0.1576	1E-8	(MTAG)	0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
951	chr20	47975014	47975015	rs237484	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.13	NR	rs237484-?	NR	1E-6		4.851	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
951	chr20	47982127	47982128	rs237450	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	20q13.13	intergenic	rs237450-A		5E-6		6.86	[NR] ms increase	Illumina [> 930000]	N
951	chr20	47990800	47990801	rs142605642	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	20q13.13	KCNB1	rs142605642-C		2E-6	(AA)	7.692308	[1.32-50]	Affymetrix, Illumina [NR] (imputed)	N
951	chr20	48004237	48004238	rs237485	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	20q13.13	KCNB1	rs237485-A	0.6976	4E-9		0.1124	[0.075-0.15] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
951	chr20	48011007	48011008	rs756529	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q13.13		rs756529-A	0.4229	4E-8		0.078123435	[0.051-0.106] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
951	chr20	48011007	48011008	rs756529	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	20q13.13	NR	rs756529-A	0.4326	4E-6		0.123	mmHg increase	Illumina [242296]	N
951	chr20	48019817	48019818	rs6063399	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.13	KCNB1	rs6063399-A	0.45	8E-6	(Fat oxidation )	0.03	[NR] %NPEE increase	Illumina [899892]	N
951	chr20	48033126	48033127	rs237460	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	20q13.13	KCNB1	rs237460-C	0.588	4E-9		0.9462	[0.93-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
951	chr20	48041210	48041211	rs3787317	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	20q13.13	NR	rs3787317-?		9E-10				NR [11140414]	N
951	chr20	48041210	48041211	rs3787317	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	20q13.13	NR	rs3787317-T	NR	9E-10		6.119	z score increase	Affymetrix [10847151] (imputed)	N
951	chr20	48042969	48042970	rs6019826	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	20q13.13	NR	rs6019826-?		6E-11				NR [520857]	N
951	chr20	48042969	48042970	rs6019826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20q13.13	NR	rs6019826-T	0.133029739739794	2E-9		0.00809374	[0.0054-0.0107] unit increase	NR [NR]	N
951	chr20	48042969	48042970	rs6019826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	20q13.13	NR	rs6019826-T	0.133029739739794	3E-9		0.0098893745	[0.0066-0.0132] unit increase	NR [NR]	N
951	chr20	48042969	48042970	rs6019826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	20q13.13	NR	rs6019826-T	0.133029739739794	2E-9		0.012884907	[0.0087-0.0171] unit increase	NR [NR]	N
951	chr20	48042969	48042970	rs6019826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	20q13.13	NR	rs6019826-T	0.133029739739794	9E-9		0.010494672	[0.0069-0.0141] unit increase	NR [NR]	N
951	chr20	48042969	48042970	rs6019826	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	20q13.13	NR	rs6019826-T	0.133029739739794	2E-9		0.008230537	[0.0055-0.0109] unit increase	NR [NR]	N
951	chr20	48042969	48042970	rs6019826	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	20q13.13	NR	rs6019826-T	NR	9E-9		5.744	z score increase	Affymetrix [10847151] (imputed)	N
951	chr20	48042969	48042970	rs6019826	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q13.13	NR	rs6019826-T	NR	2E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
951	chr20	48049505	48049506	rs237475	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	20q13.13	NR	rs237475-T	0.521	2E-11		0.9257	[0.9-0.95]	Affymetrix, Illumina [7549318] (imputed)	N
951	chr20	48058862	48058863	rs117126031	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	20q13.13	KCNB1	rs117126031-A	0.02	6E-6				Affymetrix, Illumina [14227402] (imputed)	N
951	chr20	48058862	48058863	rs117126031	25663218	Verhaaren BF	2015-07-02	Circ Cardiovasc Genet	Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI.	White matter hyperintensity burden	17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals	NA	20q13.13	KCNB1	rs117126031-A	0.02	1E-6	(EA)			Affymetrix, Illumina [14227402] (imputed)	N
951	chr20	48075911	48075912	rs579113	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	20q13.13	Intergenic	rs579113-?	NR	6E-6		1.347	[NR]	Affymetrix [492217] (imputed)	N
951	chr20	48090778	48090779	rs6125656	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	20q13.13	NR	rs6125656-?		2E-8				NR [520857]	N
951	chr20	48090778	48090779	rs6125656	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	20q13.13	KCNB1, PTGIS	rs6125656-?		3E-9				NR [6786993] (imputed)	N
951	chr20	48092063	48092064	rs6019860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.13	Intergenic	rs6019860-A	0.7228	3E-10	(MTAG)	0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
951	chr20	48092063	48092064	rs6019860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.13	Intergenic	rs6019860-A	0.7228	3E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
951	chr20	48097480	48097481	rs6090988	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	20q13.13	NR	rs6090988-?		3E-9				NR [520857]	N
952	chr20	48129168	48129169	rs7271624	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	20q13.13	NR	rs7271624-?	NR	3E-8		1.0596138	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
952	chr20	48130327	48130328	rs495146	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	20q13.13	NR	rs495146-T	0.257396429819546	5E-8		0.0070882854	[0.0045-0.0096] unit increase	NR [NR]	N
952	chr20	48130327	48130328	rs495146	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	20q13.13	NR	rs495146-T	0.257396429819546	4E-8		0.009245888	[0.0059-0.0125] unit increase	NR [NR]	N
952	chr20	48130627	48130628	rs6019879	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	20q13.13	NR	rs6019879-?	NR	1E-7				Illumina [up to 5582932] (imputed)	N
952	chr20	48131035	48131036	rs7267348	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs7267348-?	NR	8E-9				NR [2625067]	N
952	chr20	48131035	48131036	rs7267348	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs7267348-?	NR	5E-8				NR [2625067]	N
952	chr20	48131035	48131036	rs7267348	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs7267348-T	0.7326	1E-8		0.07106152	[0.047-0.096] unit decrease	NR [NR]	N
952	chr20	48131035	48131036	rs7267348	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs7267348-?		5E-9				NR [8377093]	N
952	chr20	48131035	48131036	rs7267348	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		PTGIS	rs7267348-C	NR	8E-9		1.0638298	[1.04-1.08]	Illumina [6627481] (imputed)	N
952	chr20	48131035	48131036	rs7267348	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		PTGIS	rs7267348-C	NR	1E-7	(EA)	1.0680337	[1.04-1.09]	Illumina [6627481] (imputed)	N
952	chr20	48131035	48131036	rs7267348	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls		KCNB1, PTGIS	rs7267348-?	NR	1E-7				Illumina [8000000] (imputed)	N
952	chr20	48131035	48131036	rs7267348	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls		intergenic	rs7267348-C	NR	3E-7		1.0559661	[1.03-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
952	chr20	48131035	48131036	rs7267348	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs7267348-C	NR	5E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
952	chr20	48131035	48131036	rs7267348	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls		KCNB1, PTGIS	rs7267348-C	0.246	5E-8		1.0672358	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
952	chr20	48184462	48184463	rs575322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q13.13		rs575322-?	NR	1E-8				NR [~ 8900000] (imputed)	N
952	chr20	48201639	48201640	rs535249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs535249-?	NR	2E-9				NR [~ 8900000] (imputed)	N
953	chr20	48267034	48267035	rs6063415	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.13		rs6063415-A	0.45	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
953	chr20	48283632	48283633	rs17723576	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	20q13.13	B4GALT5	rs17723576-G	0.11	6E-6		0.108	[0.061-0.155] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
953	chr20	48301145	48301146	rs6512586	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q13.13		rs6512586-A	0.5541	4E-9		0.079017065	[0.052-0.106] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
953	chr20	48340035	48340036	rs6019998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q13.13		rs6019998-?	NR	5E-10				NR [~ 8900000] (imputed)	N
953	chr20	48344310	48344311	rs1980946	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		20q13.13	B4GALT5	rs1980946-C	NR	4E-6		0.298	unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
953	chr20	48356308	48356309	rs144893052	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.13	B4GALT5	rs144893052-C	0.0239459900318831	1E-7	(G_Gemmiger_HB)	1.16847	[0.74-1.6] unit decrease	Illumina [7711310] (imputed)	N
954	chr20	48381049	48381050	rs6067212	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol dependence symptom count	1,045 Thai ancestry individuals	NA	20q13.13	intergenic	rs6067212-C	0.9204	3E-6		0.7503	[0.44-1.06] unit increase	Illumina [at least 4683137] (imputed)	N
954	chr20	48417544	48417544	rs5841771	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.13	NR	rs5841771-T	0.01045	2E-8	(ACAD11)	0.08985	NR unit increase	Illumina [1671387] (imputed)	N
954	chr20	48422094	48422095	rs6020055	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.13	B4GALT5	rs6020055-A	NR	5E-8		1.0590976	NR	Affymetrix, Illumina [8278136] (imputed)	N
954	chr20	48430679	48430680	rs6012750	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q13.13	NR	rs6012750-A	0.3889	4E-8				NR [9056863] (imputed)	N
954	chr20	48438760	48438761	rs17785991	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs17785991-A	NR	3E-10		0.07	[0.046-0.094] unit increase	Illumina [10461755] (imputed)	N
954	chr20	48438760	48438761	rs17785991	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	20q13.13		rs17785991-A	0.353	4E-10		0.074	[0.05-0.098] unit increase	Illumina [10461755] (imputed)	N
954	chr20	48438760	48438761	rs17785991	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	20q13.13	SLC9A8	rs17785991-A	0.34	4E-8		1.07		Illumina [161311]	N
954	chr20	48440022	48440023	rs1328454	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.13	SLC9A8	rs1328454-?	NR	4E-9	(subset analysis)			Illumina [130052]	N
954	chr20	48454670	48454671	rs4809760	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	20q13.13	RNF114, SLC9A8, SPATA2	rs4809760-?	NR	5E-8		0.85	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
955	chr20	48505748	48505749	rs79630422	31600170	Teumer A	2019-10-10	JCI Insight	KCND3 potassium channel gene variant confers susceptibility to electrocardiographic early repolarization pattern.	Early cardiac repolarization	3,305 European ancestry cases, 36,151 European ancestry controls	NA	20q13.13	SLC9A8	rs79630422-T	0.020	5E-7		1.754386	[1.53-1.97]	Affymetrix, Illumina [up to 6976246] (imputed)	N
955	chr20	48514918	48514919	rs2769976	31080455	Fatumo S	2019-04-26	Front Genet	Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits.	Eosinophil counts	1,555 Sub-Saharan African ancestry individuals	NA	20q13.13	intergenic	rs2769976-?	NR	6E-9				Illumina [20594536] (imputed)	N
955	chr20	48517512	48517513	rs587648	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	20q13.13	SLC9A8, SPATA2	rs587648-T	0.16	1E-6		0.045	[0.027-0.063] unit increase	Affymetrix [7947838] (imputed)	N
955	chr20	48522329	48522330	rs495337	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Psoriasis	4,212 European ancestry cases, 8,032 European ancestry controls	NA	20q13.13	SPATA2, RNF114	rs495337-A	NR	3E-9		1.1918951	[1.16-1.23]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
955	chr20	48522329	48522330	rs495337	20953189	Stuart PE	2010-10-17	Nat Genet	Genome-wide association analysis identifies three psoriasis susceptibility loci.	Psoriasis	Up to 1,831 cases, up to 2,546 controls	Up to 4,064 cases, up to 4,685 controls	20q13.13	RNF114, SLC9A8, SNAI1, SPATA2	rs495337-G	0.57	2E-7		1.21	[NR]	Illumina, Perlegen [up to 7456344] (imputed)	N
955	chr20	48522329	48522330	rs495337	18364390	Capon F	2008-03-25	Hum Mol Genet	Identification of ZNF313/RNF114 as a novel psoriasis susceptibility gene.	Psoriasis	318 European ancestry cases, 288 European ancestry controls	2,361 European ancestry cases, 1,927 European ancestry controls	20q13.13	SPATA2	rs495337-?	NR	1E-8		1.25	[1.12-1.39]	Illumina [~ 408000]	N
955	chr20	48554976	48554977	rs2235617	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	20q13.13	ZNF313	rs2235617-?	NR	2E-6		1.2	[1.11-1.30]	Illumina [535475]	N
955	chr20	48556228	48556229	rs1056198	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	20q13.13	RNF114	rs1056198-C	NR	2E-12		1.159	NR	Illumina [up to 11532644] (imputed)	N
955	chr20	48556228	48556229	rs1056198	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	20q13.13	RNF114	rs1056198-C	0.573	2E-14		1.16		Illumina [111236] (imputed)	N
955	chr20	48556460	48556461	rs6125826	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	20q13.13		rs6125826-T	0.43	9E-10		0.08	unit increase	Illumina [2093892] (imputed)	N
955	chr20	48556460	48556461	rs6125826	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	20q13.13		rs6125826-T	0.43	5E-10		0.09	unit increase	Illumina [2398641] (imputed)	N
955	chr20	48566064	48566065	rs73129298	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	20q13.13	RNF114	rs73129298-?	NR	5E-11	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
955	chr20	48575314	48575315	rs11697848	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	20q13.13	RNF114	rs11697848-?	0.051	1E-11		2.115	[1.887-2.37]	Illumina [NR]	N
955	chr20	48590790	48590791	rs6063454	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs6063454-G		5E-14		1.08		NR [8016731] (imputed)	N
955	chr20	48590790	48590791	rs6063454	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs6063454-G	NR	1E-14		1.08	NR	NR [8016731] (imputed)	N
955	chr20	48591757	48591758	rs6020157	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	20q13.13	RNU6-147P	rs6020157-?	NR	4E-17	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
955	chr20	48600556	48600557	rs4647959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs4647959-?	NR	8E-33				NR [~ 8900000] (imputed)	N
956	chr20	48632609	48632610	rs7352944	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	20q13.13	RNF114	rs7352944-T	0.5911	2E-7	(EA)	1.19	[1.11-1.27]	Illumina [up to 4778154] (imputed)	N
956	chr20	48632609	48632610	rs7352944	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	20q13.13	RNF114	rs7352944-T	0.5911	2E-6		1.15	[1.09-1.22]	Illumina [up to 4778154] (imputed)	N
956	chr20	48635161	48635162	rs142659816	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema in chronic obstructive pulmonary disease	514 Korean ancestry individuals	NA	20q13.13		rs142659816-?	NR	8E-8		0.94	[0.6-1.28] unit decrease	NR [599248] (imputed)	N
956	chr20	48635161	48635162	rs142659816	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	20q13.13		rs142659816-?	NR	3E-7		0.91	[0.57-1.25] unit decrease	NR [599248] (imputed)	N
956	chr20	48637696	48637697	rs2869941	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.13	TRERNA1	rs2869941-G	NR	2E-8		0.0205231	[0.013-0.028] unit decrease	Affymetrix [323123] (imputed)	N
956	chr20	48692454	48692455	rs1000595	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13		rs1000595-A	0.37253	5E-10		0.014969944	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
956	chr20	48697247	48697248	rs8116468	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.13	NR	rs8116468-G	0.12	8E-6	(IFNalpha_STAT4_of_CD20p)			Illumina [5084123] (imputed)	N
956	chr20	48700946	48700947	rs67366514	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs67366514-T	0.757	2E-10				Affymetrix [10369434] (imputed)	N
956	chr20	48744861	48744862	rs62209907	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.13		rs62209907-?	NR	5E-8				Affymetrix [NR] (imputed)	N
956	chr20	48744861	48744862	rs62209907	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs62209907-G	0.972	1E-12				Affymetrix [10369434] (imputed)	N
956	chr20	48748547	48748548	rs55757919	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q13.13	TMEM189-UBE2V1, TMEM189	rs55757919-T	0.2175	1E-18		0.03810006	[0.03-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
956	chr20	48756216	48756217	rs558811955	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q13.13	TMEM189-UBE2V1, TMEM189	rs558811955-C	0.3385	3E-16		0.03256049	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
957	chr20	48765534	48765535	rs111410779	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	20q13.13	NR	rs111410779-?	NR	2E-6		0.7558102	[0.67-0.85]	Affymetrix, Illumina [~ 10400000] (imputed)	N
957	chr20	48799892	48799893	rs6125932	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	20q13.13		rs6125932-C	0.4905	6E-6		0.8113		NR [11110260] (imputed)	N
957	chr20	48826879	48826880	rs6122888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.13		rs6122888-C	NR	1E-13		0.0466	[0.034-0.059] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
957	chr20	48830771	48830772	rs13040225	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas fat	25,617 European ancestry individuals	NA	20q13.13	CEBPB	rs13040225-?	NR	2E-11		0.0578	NR % increase	Affymetrix [9390170] (imputed)	N
957	chr20	48830771	48830772	rs13040225	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.13	NR	rs13040225-T	0.4649	1E-17		0.0329	[0.025-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
957	chr20	48830771	48830772	rs13040225	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	20q13.13	CEBPB	rs13040225-A	0.513	2E-14		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
957	chr20	48832134	48832135	rs11699802	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	20q13.13	CEBPB	rs11699802-C	0.54	4E-6		1.0416667	[1.02-1.06]	Illumina [12557761] (imputed)	N
957	chr20	48832134	48832135	rs11699802	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.13	CEBPB	rs11699802-C	0.5359	2E-11		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
957	chr20	48833956	48833957	rs867489	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.13	NR	rs867489-C	0.5394	2E-11		0.0312	[0.022-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
957	chr20	48835330	48835331	rs2094716	30807572	Gong J	2019-02-26	PLoS Genet	Genetic association and transcriptome integration identify contributing genes and tissues at cystic fibrosis modifier loci.	Meconium ileus in cystic fibrosis	1,115 European ancestry cases, 5,655 European ancestry controls	NA	20q13.13	CEBPB	rs2094716-A	NR	5E-7		1.3	NR	Illumina [8763019] (imputed)	N
957	chr20	48836247	48836248	rs6125942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	20q13.13		rs6125942-T	NR	2E-8		0.0116	[0.0075-0.0157] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
957	chr20	48836247	48836248	rs6125942	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13		rs6125942-T	0.397047	6E-9		0.014664666	[0.0097-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
957	chr20	48839704	48839705	rs17789520	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.13		rs17789520-?	NR	5E-8				Affymetrix [NR] (imputed)	N
957	chr20	48839704	48839705	rs17789520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.13		rs17789520-?	NR	4E-8				NR [~ 8900000] (imputed)	N
957	chr20	48852496	48852497	rs75038219	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.13		rs75038219-?	NR	5E-8				Affymetrix [NR] (imputed)	N
957	chr20	48852496	48852497	rs75038219	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs75038219-C	0.931	2E-19				Affymetrix [10369434] (imputed)	N
957	chr20	48855035	48855036	rs6020391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.13		rs6020391-?	NR	1E-7				NR [~ 8900000] (imputed)	N
957	chr20	48876401	48876402	rs6067384	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q13.13		rs6067384-?	NR	2E-8				NR [~ 8900000] (imputed)	N
957	chr20	48884123	48884124	rs6125961	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.13		rs6125961-C	0.8	2E-51				Affymetrix [10369434] (imputed)	N
957	chr20	48884123	48884124	rs6125961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13	RP11-290F20.3	rs6125961-A	0.200267	7E-116		0.0716461	[0.066-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr20	48884123	48884124	rs6125961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q13.13	RP11-290F20.3	rs6125961-A	0.2027	2E-57		0.0715748	[0.063-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
957	chr20	48884123	48884124	rs6125961	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q13.13	RP11-290F20.3	rs6125961-A	0.2026	8E-41		0.05991248	[0.051-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
957	chr20	48887267	48887268	rs17196752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20q13.13		rs17196752-T	NR	1E-108		0.0601	[0.055-0.065] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
957	chr20	48887267	48887268	rs17196752	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.13		rs17196752-?	NR	5E-8				Affymetrix [NR] (imputed)	N
957	chr20	48887267	48887268	rs17196752	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs17196752-C	0.811	1E-64				Affymetrix [10369434] (imputed)	N
957	chr20	48887267	48887268	rs17196752	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	20q13.13		rs17196752-?	NR	9E-9		0.063	[0.041-0.085] unit increase	Affymetrix [9906178] (imputed)	N
957	chr20	48887267	48887268	rs17196752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13	RP11-290F20.3	rs17196752-T	0.188855	8E-106		0.06812189	[0.062-0.074] unit decrease	Affymetrix [93095623] (imputed)	N
957	chr20	48887267	48887268	rs17196752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs17196752-T	0.178007	3E-216				Affymetrix, Illumina [23467995] (imputed)	N
957	chr20	48887267	48887268	rs17196752	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q13.13	NR	rs17196752-T	0.189945	8E-199		0.072454	[0.068-0.077] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
957	chr20	48887267	48887268	rs17196752	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q13.13	RP11-290F20.3	rs17196752-T	0.1915	2E-58		0.07366269	[0.065-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
958	chr20	48891690	48891691	rs146097282	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13	RP11-290F20.3	rs146097282-T	0.004938	2E-9		0.1006014	[0.068-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr20	48892373	48892374	rs17789629	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	20q13.13	CEBPB	rs17789629-A	NR	1E-8	(GO:0008484|MF|04|sulfuric ester hydrolase activity)	5.662547	NR Z-score decrease	Illumina [8100000] (imputed)	N
958	chr20	48892734	48892735	rs8116154	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13	RP11-290F20.3	rs8116154-A	0.267725	3E-29		0.03020202	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
958	chr20	48892941	48892942	rs41314914	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16+ monocyte	3,582 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.13		rs41314914-A	0.10652	8E-9		0.2323	[0.15-0.31] unit increase	Illumina [18196992] (imputed)	N
958	chr20	48893081	48893082	rs79165963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13	RP11-290F20.3	rs79165963-A	0.04399	4E-10		0.035463158	[0.024-0.047] unit increase	Affymetrix [93095623] (imputed)	N
958	chr20	48894755	48894756	rs3088220	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	20q13.13	CEBPB	rs3088220-T	NR	3E-9	(GO:0071805|BP|04|potassium ion transmembrane transport)	5.951341	NR Z-score decrease	Illumina [8100000] (imputed)	N
958	chr20	48903033	48903034	rs4811020	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	20q13.13		rs4811020-T	0.115902	2E-13		0.0505565	[0.037-0.064] unit decrease	Illumina [13471440] (imputed)	N
958	chr20	48903033	48903034	rs4811020	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	20q13.13	NR	rs4811020-C	0.883611	6E-15		0.05775	[0.043-0.072] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
958	chr20	48903033	48903034	rs4811020	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	20q13.13	LINC01272, LINC01270	rs4811020-?	NR	7E-10		0.05451	[0.037-0.072] unit decrease novel	Illumina [6108953] (imputed)	N
958	chr20	48906966	48906967	rs913672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13	RP11-290F20.1	rs913672-G	0.34101	2E-23		0.025735874	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
958	chr20	48906966	48906967	rs913672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q13.13	RP11-290F20.1	rs913672-G	0.3418	3E-42		0.05151609	[0.044-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
958	chr20	48909666	48909667	rs6020423	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	20q13.13	NR	rs6020423-C	0.759957	6E-12		0.0102645	[0.0073-0.0132] unit increase	Affymetrix [16578495] (imputed)	N
958	chr20	48909666	48909667	rs6020423	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q13.13	NR	rs6020423-C	0.760288	1E-36		0.0398225	[0.033-0.046] unit increase	Affymetrix [16580851] (imputed)	N
958	chr20	48909666	48909667	rs6020423	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	20q13.13	NR	rs6020423-C	0.759653	2E-18		0.0250085	[0.019-0.031] unit increase	Affymetrix [16585745] (imputed)	N
958	chr20	48911431	48911432	rs1041302	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	20q13.13	NR	rs1041302-?	NR	4E-8	(Lactivibrio)	0.364139	[0.24-0.49] unit increase	Illumina [5293637] (imputed)	N
958	chr20	48914369	48914370	rs78577294	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.13		rs78577294-C	0.886	2E-23				Affymetrix [10369434] (imputed)	N
958	chr20	48918768	48918769	rs6020427	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	20q13.13		rs6020427-?	NR	5E-8				Affymetrix [NR] (imputed)	N
958	chr20	48918768	48918769	rs6020427	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs6020427-C	0.62	3E-10				Affymetrix [10369434] (imputed)	N
958	chr20	48921362	48921363	rs998462	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.13		rs998462-C	0.975	2E-9				Affymetrix [10369434] (imputed)	N
958	chr20	48926970	48926971	rs13037502	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Thyroid stimulating hormone levels	626 Croatian individuals, 509 Korculan (founder/genetic isolate) individuals, 596 Vis (founder/genetic isolate) individuals	NA	20q13.13	PTPN1	rs13037502-C	0.18	2E-8		0.26	[0.16-0.36] mIU/L increase	Illumina [7411206] (imputed)	N
958	chr20	48945910	48945911	rs6122906	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	20q13.13		rs6122906-A	NR	4E-11		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
958	chr20	48945910	48945911	rs6122906	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20q13.13	intergenic	rs6122906-G	0.18	3E-10	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
958	chr20	48955423	48955424	rs913678	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.13		rs913678-T	0.67	5E-31				Affymetrix [10369434] (imputed)	N
958	chr20	48955423	48955424	rs913678	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	20q13.13		rs913678-T	0.67	5E-46				Affymetrix [10369434] (imputed)	N
958	chr20	48955423	48955424	rs913678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	20q13.13		rs913678-C	0.330295	8E-119		0.05551892	[0.051-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr20	48955423	48955424	rs913678	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13		rs913678-C	0.330319	3E-97		0.049962424	[0.045-0.055] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr20	48955423	48955424	rs913678	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	20q13.13		rs913678-C	0.330599	3E-36		1.0582598	[1.05-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
958	chr20	48955423	48955424	rs913678	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q13.13	Intergenic	rs913678-?		4E-7				Illumina [9725440] (imputed)	N
958	chr20	48955423	48955424	rs913678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	20q13.13	intergenic	rs913678-C	0.3309	3E-47		0.05488466	[0.047-0.062] unit decrease	Affymetrix [~ 2500000] (imputed)	N
958	chr20	48955423	48955424	rs913678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q13.13	intergenic	rs913678-C	0.3309	2E-36		0.04803622	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
958	chr20	48955423	48955424	rs913678	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	20q13.13	intergenic	rs913678-C	0.331	2E-37		0.04877176	[0.041-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
958	chr20	48955423	48955424	rs913678	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.13	NR	rs913678-A	0.67	1E-8	(EA)	1.0787014		Affymetrix, Illumina [~ 9000000] (imputed)	N
958	chr20	48955423	48955424	rs913678	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.13	NR	rs913678-A	0.67	5E-11	(EA)	1.0716122		Affymetrix, Illumina [~ 9000000] (imputed)	N
958	chr20	48955423	48955424	rs913678	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.13	CEBPB	rs913678-T	0.662	5E-8		1.056	[1.024-1.088]	Affymetrix, Illumina [1230000] (imputed)	N
958	chr20	48955594	48955595	rs6063502	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs6063502-?	NR	2E-12				NR [~ 8900000] (imputed)	N
958	chr20	48960545	48960546	rs6020459	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.13	NR	rs6020459-T	0.711608	4E-15		0.0176067	[0.013-0.022] unit decrease	NR [NR]	N
958	chr20	48963005	48963006	rs6020465	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	20q13.13		rs6020465-G	NR	5E-7		1.0705492	NR	Affymetrix [7846216] (imputed)	N
958	chr20	48965138	48965140	rs144008477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q13.13		rs144008477-T	NR	4E-10		0.0191	[0.013-0.025] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
958	chr20	48970071	48970072	rs913679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.13		rs913679-?	NR	6E-8				NR [~ 8900000] (imputed)	N
958	chr20	48979438	48979439	rs13045764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.13		rs13045764-T	0.490895	1E-10		0.014421397	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr20	48980669	48980670	rs4811050	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.13	NR	rs4811050-A	0.18	2E-11		1.1	[1.07-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
958	chr20	48983696	48983697	rs6067417	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.13	PTPN1	rs6067417-C	0.5635	4E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
958	chr20	48984750	48984751	rs12625630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	20q13.13	NR	rs12625630-T	NR	4E-9		0.0185	[0.012-0.025] unit increase	Affymetrix [9000000] (imputed)	N
958	chr20	48985288	48985289	rs6512628	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.13	NR	rs6512628-?		9E-6				Illumina [4322238] (imputed)	N
958	chr20	48994135	48994136	rs139138393	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	20q13.13	NR	rs139138393-T	NR	6E-6		0.3977	[0.23-0.57] unit decrease	Illumina [11133794] (imputed)	N
958	chr20	48994661	48994662	rs2104702	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.13	NR	rs2104702-C	0.068	6E-6	(IFNGR1_of_CD4p_T)			Illumina [5084123] (imputed)	N
958	chr20	48998013	48998014	rs4809790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20q13.13		rs4809790-C	NR	1E-8		0.0541	[0.035-0.073] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
958	chr20	48999494	48999495	rs147775533	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	20q13.13	Intergenic	rs147775533-T	NR	6E-7	(between families)	4.993	unit increase	Affymetrix [up to 15107142] (imputed)	N
958	chr20	49015310	49015311	rs6091153	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20q13.13	Metazoa_SRP	rs6091153-C	0.227994	4E-9		0.05595674	[0.037-0.075] unit increase	Affymetrix [7288503] (imputed)	N
958	chr20	49015310	49015311	rs6091153	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.13	Metazoa_SRP	rs6091153-C	0.228887	4E-8		0.040122274	[0.026-0.054] unit increase	Affymetrix [7288503] (imputed)	N
958	chr20	49020570	49020571	rs78319058	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.13	NR	rs78319058-T	0.022177000000000002	2E-11		0.0251439	[0.017-0.033] unit increase	Affymetrix [16582621] (imputed)	N
958	chr20	49020570	49020571	rs78319058	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.13	NR	rs78319058-T	0.022177000000000002	4E-10		0.0248671	[0.017-0.033] unit increase	Affymetrix [16582614] (imputed)	N
959	chr20	49055317	49055318	rs6063514	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	20q13.13	NR	rs6063514-C		2E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
959	chr20	49055317	49055318	rs6063514	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.13	PTPN1	rs6063514-C	0.6086	8E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
959	chr20	49055317	49055318	rs6063514	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	20q13.13	LINC01271, PTPN1	rs6063514-C	0.6088	2E-8		0.0768	[0.049-0.105] unit increase	Affymetrix [~ 11900000] (imputed)	N
959	chr20	49057487	49057488	rs1810502	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20q13.13	PTPN1	rs1810502-C	NR	2E-6	(East Asian)	1.06	[1.04-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
959	chr20	49057487	49057488	rs1810502	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.13	NR	rs1810502-C	NR	2E-10		1.07	[1.05-1.1]	Affymetrix, Illumina [> 10000000] (imputed)	N
959	chr20	49057487	49057488	rs1810502	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20q13.13	PTPN1	rs1810502-C	0.45	1E-6		1.07	[1.04-1.10]	Affymetrix, Illumina [up to 10700000] (imputed)	N
959	chr20	49057533	49057534	rs1810501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20q13.13		rs1810501-C	NR	3E-9		0.074	[0.049-0.099] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
959	chr20	49060190	49060191	rs6095946	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	20q13.13	PTPN1	rs6095946-?	NR	8E-9		0.075	[0.05-0.1] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
959	chr20	49060190	49060191	rs6095946	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	20q13.13	PTPN1	rs6095946-C	0.611	5E-10		0.081	[0.056-0.106] unit increase	Affymetrix, Illumina [NR] (imputed)	N
959	chr20	49061319	49061320	rs7273775	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	20q13.13	PTPN1	rs7273775-C	0.61	1E-8				Affymetrix, Illumina [8002429] (imputed)	N
959	chr20	49070722	49070723	rs6095956	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.13	C20orf175	rs6095956-?	NR	1E-6	(glucuronate)	0.21235283	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
959	chr20	49087011	49087012	rs6512645	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.13		rs6512645-A	0.403305	5E-24		0.022823153	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr20	49087011	49087012	rs6512645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6512645-A	0.38158	4E-30				Affymetrix, Illumina [24246363] (imputed)	N
959	chr20	49087011	49087012	rs6512645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.13	NR	rs6512645-A	0.404592	1E-33		0.022575	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
959	chr20	49087011	49087012	rs6512645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6512645-A	0.378026	5E-34				Affymetrix, Illumina [20825802] (imputed)	N
959	chr20	49087011	49087012	rs6512645	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.13	NR	rs6512645-A	0.403665	2E-36		0.024903	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
959	chr20	49087011	49087012	rs6512645	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.13		rs6512645-?	NR	5E-27				NR [~ 8900000] (imputed)	N
959	chr20	49087011	49087012	rs6512645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q13.13	intergenic	rs6512645-A	0.4038	2E-13		0.02669558	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49087011	49087012	rs6512645	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q13.13	intergenic	rs6512645-A	0.4039	1E-14		0.02805968	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49087628	49087629	rs7265567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.13		rs7265567-T	0.333616	4E-11		0.015772022	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49087628	49087629	rs7265567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.13		rs7265567-T	0.333626	3E-11		0.015887972	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49087628	49087629	rs7265567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.13	NR	rs7265567-T	0.335008	3E-17		0.016491	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
959	chr20	49090261	49090262	rs13037515	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.13		rs13037515-?	NR	3E-25				NR [~ 8900000] (imputed)	N
959	chr20	49091939	49091940	rs6126015	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.13	Intergenic	rs6126015-T	0.5126	2E-11	(MTAG)	0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr20	49092095	49092096	rs6126016	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.13	Intergenic	rs6126016-G	0.5126	1E-8		0.0112	[0.0073-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
959	chr20	49092994	49092995	rs6095965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.13		rs6095965-C	NR	3E-21		0.0156	[0.012-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
959	chr20	49092994	49092995	rs6095965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	20q13.13		rs6095965-C	0.329938	2E-8		0.0182305	[0.012-0.025] unit increase	Illumina [13478948] (imputed)	N
959	chr20	49092994	49092995	rs6095965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	20q13.13		rs6095965-C	0.330234	4E-11		0.0220127	[0.015-0.029] unit increase	Illumina [13478961] (imputed)	N
959	chr20	49093625	49093626	rs6063523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.13	Intergenic	rs6063523-A	0.5118	7E-11	(MTAG)	0.0149	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr20	49093788	49093789	rs6126017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	20q13.13	NR	rs6126017-T	0.695908	9E-10		0.024926	[0.017-0.033] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
959	chr20	49099808	49099809	rs4811073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.13		rs4811073-T	NR	1E-15		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
959	chr20	49099808	49099809	rs4811073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.13		rs4811073-T	NR	7E-19		0.0181	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
959	chr20	49099808	49099809	rs4811073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.13	COX6CP2	rs4811073-T	0.545685	1E-14		0.017406112	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr20	49099808	49099809	rs4811073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.13	COX6CP2	rs4811073-T	0.545595	1E-20		0.0206186	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr20	49099808	49099809	rs4811073	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	20q13.13	NR	rs4811073-C	0.694469	8E-11		0.02593	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
959	chr20	49100044	49100045	rs6067464	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	20q13.13		rs6067464-G	0.304691	2E-12		0.0239267	[0.017-0.031] unit increase	Illumina [13479135] (imputed)	N
959	chr20	49100044	49100045	rs6067464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.13	COX6CP2	rs6067464-G	0.545804	8E-14		0.016877985	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
959	chr20	49100044	49100045	rs6067464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6067464-G	0.496877	2E-80				Affymetrix, Illumina [24332387] (imputed)	N
959	chr20	49100044	49100045	rs6067464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.13	NR	rs6067464-G	0.545976	5E-75		0.034244	[0.031-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
959	chr20	49101589	49101590	rs6126019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.13		rs6126019-C	NR	1E-49		0.026	[0.022-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
959	chr20	49101589	49101590	rs6126019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.13		rs6126019-C	NR	2E-28		0.0188	[0.015-0.022] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.13		rs6126019-C	0.546817	3E-52		0.03384373	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.13		rs6126019-C	0.546847	9E-23		0.021898057	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.13		rs6126019-C	0.546833	2E-29		0.025081785	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6126019-C	0.499937	1E-32				Affymetrix, Illumina [24653286] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q13.13	NR	rs6126019-C	0.547401	1E-30		0.021331	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6126019-C	0.501637	1E-44				Affymetrix, Illumina [24558453] (imputed)	N
959	chr20	49101589	49101590	rs6126019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.13	NR	rs6126019-C	0.547346	3E-39		0.024337	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
959	chr20	49101589	49101590	rs6126019	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.13		rs6126019-?	NR	2E-55				NR [~ 8900000] (imputed)	N
959	chr20	49101589	49101590	rs6126019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20q13.13	intergenic	rs6126019-C	0.5467	1E-21		0.03419258	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49101589	49101590	rs6126019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	20q13.13	intergenic	rs6126019-C	0.5468	2E-11		0.0237895	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49102814	49102815	rs6063526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.13		rs6063526-A	NR	7E-10		0.013	[0.0089-0.0171] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
959	chr20	49102814	49102815	rs6063526	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs6063526-A	0.29533	3E-16				Affymetrix, Illumina [24588908] (imputed)	N
959	chr20	49105784	49105785	rs6122940	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	20q13.13	intergenic	rs6122940-T	0.0963	2E-9		0.03693987	[0.025-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49106513	49106514	rs11697371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	20q13.13	intergenic	rs11697371-T	0.0858	2E-9		0.03889369	[0.026-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49108569	49108569	rs562398803	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	20q13.13	intergenic	rs562398803-CA	0.3537	3E-10		0.02442577	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
959	chr20	49109844	49109845	rs4811076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.13		rs4811076-A	0.489671	2E-15		0.01787804	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
959	chr20	49109844	49109845	rs4811076	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.13	intergenic	rs4811076-A		1E-12		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
959	chr20	49119418	49119419	rs6020560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.13	Intergenic	rs6020560-T	0.5211	1E-12	(MTAG)	0.0117	[0.0084-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr20	49119418	49119419	rs6020560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.13		rs6020560-T	0.5258	4E-9		0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
959	chr20	49119418	49119419	rs6020560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.13	Intergenic	rs6020560-T	0.5258	2E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
959	chr20	49123042	49123043	rs6012953	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	20q13.13	PTPN1	rs6012953-G	0.4765	9E-9		1.148	[1.10-1.20]	Illumina [8966411] (imputed)	N
959	chr20	49130118	49130119	rs2206656	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	20q13.13	NR	rs2206656-C	0.6137	5E-12		6.895	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
959	chr20	49134534	49134535	rs13045492	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20q13.13		rs13045492-T	NR	9E-13		0.0213	[0.015-0.027] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
959	chr20	49134534	49134535	rs13045492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs13045492-T	0.0854484	6E-18				Affymetrix, Illumina [19872809] (imputed)	N
959	chr20	49134534	49134535	rs13045492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q13.13	NR	rs13045492-T	0.083922	1E-19		0.032686	[0.026-0.04] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
959	chr20	49150509	49150510	rs6091176	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q13.13	PTPN1	rs6091176-T	0.260639	8E-10		0.015584568	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
960	chr20	49152671	49152672	rs117279022	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.13	NR	rs117279022-T	NR	2E-14		0.0448	[0.033-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
960	chr20	49162185	49162186	rs6126042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q13.13	PTPN1	rs6126042-T	0.084714	1E-20		0.03744748	[0.03-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr20	49162185	49162186	rs6126042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q13.13	PTPN1	rs6126042-T	0.0847020000000001	2E-18		0.035366826	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr20	49162185	49162186	rs6126042	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.13		rs6126042-?	NR	4E-19				NR [~ 8900000] (imputed)	N
960	chr20	49172234	49172235	rs4602269	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q13.13		rs4602269-T	0.08	4E-9		5.9	z score increase	Affymetrix [9061022] (imputed)	N
960	chr20	49185271	49185272	rs2904270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs2904270-A	0.542493	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
960	chr20	49185271	49185272	rs2904270	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q13.13	NR	rs2904270-A	0.517092	1E-16		0.015318	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
960	chr20	49185422	49185423	rs3787345	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q13.13		rs3787345-T	NR	3E-13		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
960	chr20	49189167	49189168	rs6063534	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.13	PTPN1	rs6063534-T	0.5187	2E-19		0.0172	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
960	chr20	49191903	49191904	rs754118	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	20q13.13	NR	rs754118-?	NR	8E-6				Illumina [1735619]	N
960	chr20	49191903	49191904	rs754118	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	20q13.13	NR	rs754118-?	NR	1E-6	(EA)			Illumina [1735619]	N
960	chr20	49192311	49192312	rs75146649	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	20q13.13		rs75146649-?	NR	5E-9		0.0193437	[0.012-0.026] unit increase	Affymetrix [20259828] (imputed)	N
960	chr20	49196283	49196284	rs2230604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.13	PTPN1	rs2230604-T	0.083504	2E-12		0.028448423	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
960	chr20	49205094	49205095	rs1060402	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	20q13.13		rs1060402-G	0.483	3E-12				Affymetrix [10369434] (imputed)	N
960	chr20	49205094	49205095	rs1060402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	20q13.13	FAM65C	rs1060402-A	0.517779	2E-14		0.016968967	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr20	49205094	49205095	rs1060402	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.13	FAM65C	rs1060402-A	0.517827	4E-19		0.01987113	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr20	49205094	49205095	rs1060402	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.13		rs1060402-?	NR	2E-10				NR [~ 8900000] (imputed)	N
960	chr20	49205319	49205320	rs7508819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.13	NR	rs7508819-T	0.552597	4E-21				Affymetrix, Illumina [23472807] (imputed)	N
960	chr20	49205319	49205320	rs7508819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.13	NR	rs7508819-T	0.535584	2E-23		0.019924	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
960	chr20	49210634	49210635	rs35963161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q13.13		rs35963161-A	NR	4E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
960	chr20	49212035	49212036	rs184314239	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.13	FAM65C	rs184314239-T	0.00125900000000001	2E-10		0.21765839	[0.15-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
960	chr20	49214155	49214156	rs6020624	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.13	FAM65C	rs6020624-A		1E-8		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
960	chr20	49226495	49226496	rs6020636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q13.13	NR	rs6020636-C	0.637475	5E-10		0.01319	[0.009-0.0173] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
960	chr20	49243176	49243177	rs116901476	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RIPOR3	rs116901476-?	NR	4E-9		1.97992	[NR] unit decrease	Affymetrix [NR] (imputed)	N
960	chr20	49256284	49256285	rs6091189	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.13	PTPN1	rs6091189-T	0.1529	2E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [16900397] (imputed)	N
961	chr20	49306933	49306934	rs117246187	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA	20q13.13		rs117246187-A	0.07	9E-7		1.57	[1.12-2.61] unit decrease	Illumina [19468843] (imputed)	N
961	chr20	49324288	49324289	rs16995450	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.13	NR	rs16995450-?	NR	1E-33				Affymetrix [NR]	N
961	chr20	49355514	49355515	rs6020718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	20q13.13		rs6020718-C	0.975597	1E-9		0.0775899	[0.053-0.103] unit increase	Illumina [13476165] (imputed)	N
961	chr20	49375241	49375242	rs6122972	21771265	Yosifova A	2011-07-19	Genes Brain Behav	Genome-wide association study on bipolar disorder in the Bulgarian population.	Bipolar disorder	188 Bulgarian ancestry cases, 376 Bulgarian ancestry controls	122 Bulgarian ancestry cases, 328 Bulgarian ancestry controls	20q13.13	PARD6B	rs6122972-A	0.82	3E-6		2.02	[1.46-2.80]	Illumina [497732]	N
961	chr20	49384744	49384745	rs6091213	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.13	NR	rs6091213-C	0.26	4E-10		1.08	[1.05-1.11]	Affymetrix, Illumina [> 10000000] (imputed)	N
961	chr20	49391905	49391906	rs6013012	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	20q13.13		rs6013012-?	NR	2E-10		0.923806	[0.9-0.95]	NR [685523]	N
961	chr20	49391905	49391906	rs6013012	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		20q13.13	NR	rs6013012-T	NR	1E-7		1.12342	[1.07596-1.17298]	Affymetrix [5734850] (imputed)	N
961	chr20	49392744	49392745	rs11908416	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	20q13.13	BCAS4	rs11908416-A	0.240924	2E-16		0.107575655	[0.082-0.133] unit decrease	Affymetrix [7260263] (imputed)	N
961	chr20	49399006	49399007	rs62202837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	20q13.13		rs62202837-T	NR	4E-13		0.0812	[0.059-0.103] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
961	chr20	49399006	49399007	rs62202837	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	20q13.13	BCAS4	rs62202837-C	0.758185	2E-13		1.0752687	[1.05-1.1]	Affymetrix [7600000] (imputed)	N
961	chr20	49399006	49399007	rs62202837	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	20q13.13	BCAS4	rs62202837-C	0.769557	5E-17		1.0869565	[1.06-1.11]	Affymetrix, Illumina [up to 9061544] (imputed)	N
962	chr20	49424732	49424733	rs568206172	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	20q13.13	BCAS4	rs568206172-A	0.01	5E-6	(African American)	0.88	0.5-1.25 unit decrease	Illumina [NR] (imputed)	N
962	chr20	49442654	49442655	rs6020772	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls		NR	rs6020772-T	0.2491	1E-6	(EA)	0.0348	[0.021-0.049] unit decrease	Illumina [~ 11800000] (imputed)	N
962	chr20	49514588	49514589	rs12479470	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	20q13.13		rs12479470-T	0.74	2E-9		0.08	unit increase	Illumina [2093892] (imputed)	N
962	chr20	49514588	49514589	rs12479470	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	20q13.13		rs12479470-T	0.74	5E-8		0.08	unit increase	Illumina [2398641] (imputed)	N
962	chr20	49527921	49527922	rs12480328	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	20q13.13	ADNP	rs12480328-T	0.93	5E-11		1.13	[1.10-1.17]	Affymetrix, Illumina [up to 16852405] (imputed)	N
962	chr20	49527921	49527922	rs12480328	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	20q13.13	ADNP	rs12480328-T	0.93	2E-7	(EA)	1.13	[1.08-1.17]	Affymetrix, Illumina [up to 16852405] (imputed)	N
962	chr20	49540924	49540925	rs16995626	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	20q13.13	NR	rs16995626-C	0.07225300000000001	4E-15		0.017988	[0.013-0.023] unit increase	Affymetrix [16585854] (imputed)	N
962	chr20	49540924	49540925	rs16995626	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	20q13.13	NR	rs16995626-C	0.07225300000000001	3E-10		0.0169788	[0.012-0.022] unit increase	Affymetrix [16585866] (imputed)	N
963	chr20	49548806	49548807	rs73909841	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.13	NR	rs73909841-T	NR	5E-16		1.106	[1.08-1.13]	Affymetrix, Illumina [29235255] (imputed)	N
963	chr20	49548806	49548807	rs73909841	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	20q13.13	NR	rs73909841-T	0.925	9E-6		1.202	[1.11-1.30]	Affymetrix, Illumina [10186136] (imputed)	N
963	chr20	49569024	49569025	rs55987409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.13	NR	rs55987409-T	0.07231900000000002	6E-28		0.0181766	[0.015-0.021] unit increase	Affymetrix [16582909] (imputed)	N
963	chr20	49569024	49569025	rs55987409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.13	NR	rs55987409-T	0.07231900000000002	7E-19		0.016543	[0.013-0.02] unit increase	Affymetrix [16582965] (imputed)	N
963	chr20	49570402	49570403	rs73909848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.13	NR	rs73909848-G	0.07266799999999995	3E-14		0.0164945	[0.012-0.021] unit increase	Affymetrix [16582621] (imputed)	N
963	chr20	49570402	49570403	rs73909848	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.13	NR	rs73909848-G	0.07266799999999995	1E-9		0.0141214	[0.0094-0.0188] unit increase	Affymetrix [16582614] (imputed)	N
963	chr20	49609676	49609677	rs10470013	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	20q13.13	KCNG1	rs10470013-?	0.11	7E-7		0.73	[0.46-1.00] unit increase	Illumina [6112217] (imputed)	N
963	chr20	49610596	49610597	rs8118905	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	20q13.13	KCNG1	rs8118905-C	NR	2E-8		1.07	[1.05-1.09]	Affymetrix [up to 49134253] (imputed)	N
963	chr20	49620270	49620271	rs1850	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	20q13.13	DPM1, MOCS3, KCNG1	rs1850-C	0.347	4E-6		1.055799		NR [9372253] (imputed)	N
963	chr20	49620270	49620271	rs1850	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	20q13.13	DPM1, MOCS3, KCNG1	rs1850-C	0.347	6E-8		1.0911194	[NR]	NR [9372253] (imputed)	N
963	chr20	49630617	49630618	rs6091248	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or type 2 diabetes	20,352 European ancestry bipolar disorder cases, 26,676 European ancestry type 2 diabetes cases, 163,890 European ancestry controls	NA	20q13.13	KCNG1	rs6091248-A	NR	4E-8		0.05	[0.030-0.070] unit increase	NR [2013566] (imputed)	N
963	chr20	49637973	49637974	rs6096232	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	20q13.13	NR	rs6096232-G	0.060598	5E-6		1.139	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
963	chr20	49671434	49671435	rs4811117	23918034	Kuhnisch J	2013-08-07	Clin Oral Investig	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	20q13.13	NFATC2, KCNG1	rs4811117-T	0.124	5E-6		3.13	[1.92-5.13]	Affymetrix [2013491] (imputed)	N
964	chr20	49689348	49689349	rs2870031	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	20q13.13	NR	rs2870031-?	NR	6E-6	(Richness)	12.1865	[6.95-17.42] unit increase	Illumina [5293637] (imputed)	N
964	chr20	49715106	49715107	rs149264569	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	20q13.13	intergenic	rs149264569-G	0.019	2E-6		6.037	[2.878-12.66]	Illumina [7585874] (imputed)	N
964	chr20	49716116	49716117	rs6067645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.13	Intergenic	rs6067645-A	0.5018	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
964	chr20	49739859	49739860	rs230014	23459443	Avery CL	2013-03-05	Pharmacogenomics J	Drug-gene interactions and the search for missing heritability: a cross-sectional pharmacogenomics study of the QT interval.	QT interval (drug interaction)	33,781 European ancestry individuals	NA	20q13.13	RPSAP1	rs230014-A	0.48	4E-6	(Sulfonylurea Hypoglycemic agents)			Affymetrix, Illumina [~ 2500000] (imputed)	N
965	chr20	49826179	49826180	rs6021046	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	20q13.2	NA	rs6021046-T	0.2312	5E-7		0.0102	[0.0063-0.0141] unit increase	NR [~ 27400000] (imputed)	N
965	chr20	49864531	49864532	rs76457099	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	20q13.2	NR	rs76457099-?	NR	3E-6		1.129	[0.59-1.67] unit increase	Illumina [at least 560000] (imputed)	N
966	chr20	50013780	50013781	rs2024582	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.2	NFATC2	rs2024582-C	NR	5E-8		0.0160448	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
966	chr20	50015298	50015299	rs2426295	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	20q13.2	NR	rs2426295-?	NR	2E-17		8.502	NR z score decrease	Illumina [at least 830937] (imputed)	N
966	chr20	50035493	50035494	rs575511792	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs575511792-C	0.03136	2E-8	(HNRNPH3)	0.04945	NR unit increase	Illumina [1671387] (imputed)	N
966	chr20	50036236	50036237	rs6021191	25987655	Fernandez CA	2015-05-18	Blood	Genome-wide analysis links NFATC2 with asparaginase hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	3,126 child cases	182 child cases	20q13.2	NFATC2	rs6021191-T		4E-8		3.109		Affymetrix [NR]	N
966	chr20	50064220	50064221	rs17728712	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary uric acid excretion	6,462 European ancestry individuals	NA	20q13.2	NFATC2	rs17728712-A	0.24	4E-6		12.41	NR unit increase	NR [NR] (imputed)	N
966	chr20	50065647	50065648	rs228836	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	20q13.2	NFATC2	rs228836-G	0.411	8E-10	(EA)	0.061	[0.041-0.081] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
966	chr20	50068743	50068744	rs62229760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.2	NFATC2	rs62229760-G	0.501381	4E-9		0.013008142	[0.0087-0.0174] unit increase	Affymetrix [93095623] (imputed)	N
966	chr20	50068743	50068744	rs62229760	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.2	NR	rs62229760-G	0.503926	4E-10		0.011989	[0.0082-0.0157] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
967	chr20	50077242	50077243	rs754559199	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	20q13.2	NFATC2	rs754559199-T	0.0083	1E-6		0.9322	[0.56-1.31] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
967	chr20	50083573	50083574	rs193091397	28924203	Ren HY	2017-09-18	Sci Rep	The common variants implicated in microstructural abnormality of first episode and drug-naive patients with schizophrenia.	White matter microstructure in first episode schizophrenia (right anterior cingulate cortex)	93 Han Chinese cases, 134 Han Chinese controls	NA	20q13.2	NFATC2	rs193091397-?	NR	1E-7		2.83	unit decrease	Illumina [6055918] (imputed)	N
967	chr20	50098706	50098707	rs140297241	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	20q13.2	NR	rs140297241-T	NR	4E-6		2.2041	NR	Illumina [at least 560000] (imputed)	N
967	chr20	50108319	50108320	rs4809847	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	20q13.2	NFATC2	rs4809847-?		5E-6				Illumina [859311]	N
967	chr20	50108979	50108980	rs6021247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q13.2		rs6021247-A	NR	2E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
967	chr20	50108979	50108980	rs6021247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20q13.2		rs6021247-A	NR	2E-11		0.0389	[0.028-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
967	chr20	50108979	50108980	rs6021247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	20q13.2		rs6021247-A	NR	1E-8		0.0379	[0.025-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
967	chr20	50108979	50108980	rs6021247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q13.2		rs6021247-A	NR	1E-10		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
967	chr20	50108979	50108980	rs6021247	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20q13.2	NFATC2	rs6021247-G	0.472054	2E-10		0.050186094	[0.035-0.066] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr20	50108979	50108980	rs6021247	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20q13.2	NFATC2	rs6021247-G	0.471729	1E-8		0.04615379	[0.03-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr20	50108979	50108980	rs6021247	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.2	NFATC2	rs6021247-G	0.471547	4E-8		0.033070765	[0.021-0.045] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.2		rs6021247-?	NR	7E-13				NR [~ 8900000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.2		rs6021247-?	NR	4E-8				NR [~ 8900000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.2	NR	rs6021247-A	0.5843	5E-9	(East Asian)	0.3671	[0.24-0.49] unit increase	Illumina [6200000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.2	NR	rs6021247-A	0.5843	1E-8	(East Asian)	0.2527	[0.17-0.34] unit increase	Illumina [6200000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	20q13.2	NR	rs6021247-A	0.5601	6E-8	(East Asian)	0.0603	[0.039-0.082] unit increase	Illumina [6200000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.2	NR	rs6021247-A	0.5601	8E-7	(East Asian)	0.1956	[0.12-0.27] unit increase	Illumina [6200000] (imputed)	N
967	chr20	50108979	50108980	rs6021247	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	20q13.2	NFATC2	rs6021247-A	0.5327	4E-17		0.2041	[0.16-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
967	chr20	50109241	50109242	rs111824870	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	20q13.2		rs111824870-C	NR	5E-8		0.445	[0.29-0.6] unit decrease	Affymetrix [509886] (imputed)	N
967	chr20	50110557	50110558	rs3787192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	20q13.2		rs3787192-G	0.592798	3E-8		0.0188692	[0.012-0.026] unit increase	Illumina [13477770] (imputed)	N
967	chr20	50110557	50110558	rs3787192	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q13.2		rs3787192-G	NR	2E-9		0.0109	[0.0074-0.0144] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
967	chr20	50116126	50116127	rs4809849	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20q13.2		rs4809849-T	NR	3E-9		0.0383	[0.026-0.051] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
967	chr20	50135843	50135844	rs16996066	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs16996066-?	NR	4E-10				Affymetrix [NR]	N
967	chr20	50140626	50140627	rs3746420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs3746420-C	0.0590893	9E-12				Affymetrix, Illumina [19872809] (imputed)	N
967	chr20	50140626	50140627	rs3746420	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q13.2	NR	rs3746420-C	0.061219	2E-14		0.031805	[0.024-0.04] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
967	chr20	50141140	50141141	rs6021268	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	20q13.2	NR	rs6021268-T	0.93884	2E-9		1.0715816	[1.05-1.1]	Affymetrix [15688218] (imputed)	N
967	chr20	50141140	50141141	rs6021268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	20q13.2	NFATC2	rs6021268-C	0.0625	4E-9		0.04377577	[0.029-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
967	chr20	50141140	50141141	rs6021268	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	20q13.2	NFATC2	rs6021268-C	0.0625	7E-9		0.04306346	[0.029-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
967	chr20	50141263	50141264	rs6021270	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	20q13.2	NFATC2	rs6021270-C	0.0576	7E-9		0.1517	[0.10-0.20] unit decrease	Illumina [2400000] (imputed)	N
967	chr20	50142622	50142623	rs6126249	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	20q13.2	NFATC2	rs6126249-G	0.938916	3E-9		1.0772772	1.05102110842633-1.10418913056962]	NR [9572556] (imputed)	N
967	chr20	50148624	50148625	rs77794641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	20q13.2	NFATC2	rs77794641-T	0.0302	2E-6		0.1002	[0.059-0.141] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
967	chr20	50150459	50150460	rs2179746	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.2	ATP9A	rs2179746-?	NR	3E-6	(LPC 20:3)	0.22174525	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
967	chr20	50153343	50153344	rs3787186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.2		rs3787186-?	NR	5E-8				NR [~ 8900000] (imputed)	N
967	chr20	50153343	50153344	rs3787186	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	20q13.2	NR	rs3787186-?	NR	2E-8				Illumina [at least 7383741] (imputed)	N
967	chr20	50154646	50154647	rs12625547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	20q13.2		rs12625547-G	NR	2E-23		0.1403	[0.11-0.17] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
967	chr20	50154646	50154647	rs12625547	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	20q13.2		rs12625547-G	0.174553	1E-12		0.003285	[0.0024-0.0042] unit decrease	Affymetrix [10829469] (imputed)	N
967	chr20	50154646	50154647	rs12625547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	20q13.2		rs12625547-?	NR	6E-12				NR [~ 8900000] (imputed)	N
967	chr20	50154646	50154647	rs12625547	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	20q13.2	NR	rs12625547-G	0.18	7E-13		0.147	[0.11-0.19] unit decrease	Affymetrix [10972371] (imputed)	N
967	chr20	50155385	50155386	rs6021276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	20q13.2		rs6021276-C	0.573010587	2E-8		0.05578731	[0.036-0.075] unit decrease	Illumina [13134967] (imputed)	N
967	chr20	50155385	50155386	rs6021276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	20q13.2		rs6021276-C	NR	1E-8		0.0442	[0.029-0.059] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
967	chr20	50155385	50155386	rs6021276	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	20q13.2	NR	rs6021276-C	0.5734	9E-10		0.0547	[0.037-0.072] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
967	chr20	50155385	50155386	rs6021276	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.2	NR	rs6021276-C	0.6262	2E-12		0.0283	[0.02-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
967	chr20	50155385	50155386	rs6021276	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	20q13.2		rs6021276-C	0.573133784	2E-9		0.9506334	[0.935053891-0.966472462]	Illumina [8919992] (imputed)	N
967	chr20	50155385	50155386	rs6021276	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	20q13.2	NFATC2	rs6021276-T	0.41	7E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
967	chr20	50155385	50155386	rs6021276	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	20q13.2	NFATC2	rs6021276-T	0.43	2E-9		1.06	1.04-1.07	Illumina [12557761] (imputed)	N
967	chr20	50157836	50157837	rs3787184	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	20q13.2	NR	rs3787184-?	NR	8E-8		1.0386373	NR	Affymetrix [15688218] (imputed)	N
967	chr20	50157836	50157837	rs3787184	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	20q13.2	NFATC2, KCNG1	rs3787184-A	0.8124	5E-8		1.0638298	[1.04-1.08]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
967	chr20	50157836	50157837	rs3787184	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	20q13.2	NFATC2	rs3787184-A	0.78	1E-12		1.049	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
967	chr20	50158472	50158473	rs2235856	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.2		rs2235856-A	0.548726467	6E-9		0.05482413	[0.036-0.073] unit decrease	Illumina [13429769] (imputed)	N
967	chr20	50165633	50165634	rs6013210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	20q13.2	NFATC2	rs6013210-G	0.118438	2E-14		0.026618816	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr20	50165633	50165634	rs6013210	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q13.2	NFATC2	rs6013210-G	0.118431	6E-12		0.02387316	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr20	50165633	50165634	rs6013210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.2		rs6013210-?	NR	7E-12				NR [~ 8900000] (imputed)	N
968	chr20	50201727	50201728	rs73133002	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Bilateral Heschl's gyrus)	228 European ancestry cases, 587 European ancestry controls	NA	20q13.2		rs73133002-?	NR	6E-6		0.494	[0.28-0.71] unit decrease	Illumina [5082878] (imputed)	N
968	chr20	50209919	50209920	rs55797066	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	20q13.2	SALL4, NFATC2, MIR3194, ATP9A	rs55797066-C	0.06	8E-6		1.33	[NR]	Illumina [7659573] (imputed)	N
968	chr20	50226217	50226218	rs742757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.2		rs742757-?	NR	8E-13				NR [~ 8900000] (imputed)	N
968	chr20	50233580	50233581	rs6013233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	20q13.2		rs6013233-A	NR	1E-9		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
968	chr20	50262762	50262763	rs2426338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.2		rs2426338-?	NR	2E-10				NR [~ 8900000] (imputed)	N
969	chr20	50342809	50342810	rs8124080	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q13.2	NR	rs8124080-?	NR	2E-8				Illumina [7760689] (imputed)	N
969	chr20	50342959	50342960	rs4809866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.2		rs4809866-?	NR	4E-8				NR [~ 8900000] (imputed)	N
969	chr20	50402078	50402079	rs17201143	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.2	NA	rs17201143-T	0.3054	1E-9		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
969	chr20	50407501	50407502	rs6126344	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	20q13.2	NR	rs6126344-C	0.59	6E-8		1.1764705	[NR]	Illumina [803202]	N
969	chr20	50408672	50408673	rs77538589	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	20q13.2	SALL4	rs77538589-?		1E-10		3.3	[2.3-4.7]	Illumina [NR] (imputed)	N
969	chr20	50415960	50415961	rs79676117	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.7234..inosine.5..phosphate.biosynthesis.III)	7,738 European ancestry individuals	NA	20q13.2		rs79676117-A	0.9498102589452075	1E-8		0.21134815	[0.14-0.28] unit decrease	Illumina [5584686] (imputed)	N
969	chr20	50431112	50431113	rs73273528	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	20q13.2	NR	rs73273528-C	NR	1E-6		0.2672	[0.16-0.38] SD units decrease	NR [10700000] (imputed)	N
970	chr20	50482377	50482378	rs6063725	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.2	ATP9A	rs6063725-?	NR	4E-6	(5-hydroxyindoleacetic acid)	0.21575543	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
970	chr20	50541547	50541548	rs73277715	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	20q13.2	intergenic	rs73277715-?	NR	4E-6				Affymetrix, Illumina [4802696] (imputed)	N
970	chr20	50559651	50559652	rs6068020	19478329	Aston KI	2009-05-28	J Androl	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	20q13.2	SALL4	rs6068020-?	0.49	5E-7	(azoospermia)			Illumina [314776]	N
970	chr20	50574626	50574627	rs6021571	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	20q13.2		rs6021571-T	NR	9E-6		0.2822	unit increase	Illumina [8524982] (imputed)	N
971	chr20	50606328	50606329	rs6021602	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	20q13.2	NR	rs6021602-?	NR	1E-8		2.89	[1.89-3.88] unit decrease	Illumina [552487]	N
971	chr20	50637659	50637660	rs6013355	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	20q13.2	ZFP64	rs6013355-A	0.84	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
971	chr20	50686014	50686015	rs6013374	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		20q13.2	intergenic	rs6013374-?		5E-6				Affymetrix [7000000] (imputed)	N
971	chr20	50687972	50687973	rs144517374	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	20q13.2	NR	rs144517374-A	0.006878	1E-6		0.8991	[0.54-1.26] unit decrease	Illumina [10677593] (imputed)	N
971	chr20	50702632	50702633	rs6013382	17362836	Schymick JC	2007-02-20	Lancet Neurol	Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.	Amyotrophic lateral sclerosis	276 European ancestry cases, 271 European ancestry controls	NA	20q13.2	ZFP64	rs6013382-?	NR	5E-6		1.43	[1.11-1.67]	Illumina [549062]	N
971	chr20	50708053	50708054	rs12481572	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	20q13.2	intergenic	rs12481572-T	0.2	3E-12		1.2	[1.14-1.27]	Illumina [at least 371504] (imputed)	N
972	chr20	50741989	50741990	rs8120062	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	20q13.2	ZFP64	rs8120062-A	0.1983	8E-6		1.527	[1.268-1.839]	Affymetrix, Illumina [14074516] (imputed)	N
972	chr20	50752095	50752096	rs34248912	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs34248912-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
972	chr20	50783448	50783449	rs72626581	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	20q13.2	ZFP64	rs72626581-T	0.7458	6E-6		4.531	z score decrease	Illumina [at least 6190549] (imputed)	N
972	chr20	50810182	50810182	rs201303811	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.2	ZFP64	rs201303811-CT	0.2884	5E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
972	chr20	50826345	50826346	rs8123919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.2	Intergenic	rs8123919-T	0.3731	2E-8	(MTAG)	0.0103	[0.0066-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
972	chr20	50826345	50826346	rs8123919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	20q13.2	Intergenic	rs8123919-C	0.6269	3E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
972	chr20	50832593	50832594	rs13042756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.2		rs13042756-?	NR	4E-9				NR [~ 8900000] (imputed)	N
972	chr20	50846917	50846918	rs6021798	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs6021798-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
973	chr20	50868673	50868674	rs117718271	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	20q13.2	NR	rs117718271-?	NR	3E-9		2166.1995	NR unit decrease	Illumina [2379855]	N
973	chr20	50888327	50888328	rs2426429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20q13.2		rs2426429-G	NR	2E-9		0.0313	[0.021-0.041] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
973	chr20	50889987	50889988	rs6068117	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.2	RP4-723E3.1	rs6068117-G	0.286206	4E-9		0.039529137	[0.026-0.053] unit increase	Affymetrix [7288503] (imputed)	N
973	chr20	50899692	50899693	rs2206929	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	20q13.2	ZFP64	rs2206929-T	0.7096	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
973	chr20	50912494	50912495	rs10485622	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	20q13.2	NR	rs10485622-G	0.189050838928876	2E-8		0.0066296738	[0.0043-0.0089] unit decrease	NR [NR]	N
973	chr20	50912494	50912495	rs10485622	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	20q13.2	NR	rs10485622-G	0.189050838928876	5E-8		0.010493384	[0.0067-0.0143] unit decrease	NR [NR]	N
973	chr20	50912494	50912495	rs10485622	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	20q13.2	NR	rs10485622-G	0.189050838928876	4E-8		0.0067371535	[0.0043-0.0091] unit decrease	NR [NR]	N
973	chr20	50914230	50914231	rs12481280	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	20q13.2	LINC01524	rs12481280-C	0.36250001	3E-7		0.165741	[0.1-0.23] unit decrease	Affymetrix [9463307] (imputed)	N
973	chr20	50914230	50914231	rs12481280	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	20q13.2	LINC01524	rs12481280-C	0.36250001	3E-6		0.00444139	[0.0026-0.0063] unit increase	Affymetrix [9463307] (imputed)	N
973	chr20	50915538	50915539	rs4811321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.2		rs4811321-A	NR	7E-10		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
973	chr20	50951297	50951298	rs6096886	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	20q13.2	NR	rs6096886-G	0.1899	2E-19		0.02839023	[0.022-0.035] unit decrease	Affymetrix [10549349] (imputed)	N
973	chr20	50960489	50960490	rs35388084	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	20q13.2	NA	rs35388084-A	0.1815	6E-26		0.0261	[0.021-0.031] unit decrease	NR [~ 27400000] (imputed)	N
973	chr20	50963242	50963243	rs2904155	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.2	RP4-723E3.1	rs2904155-A	NR	3E-8		0.0180199	[0.012-0.024] unit decrease	Affymetrix [127266] (imputed)	N
973	chr20	50963242	50963243	rs2904155	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	20q13.2	NR	rs2904155-A	NR	5E-6		0.009673	[0.0055-0.0138] unit increase	Illumina [~ 540852]	N
973	chr20	50963242	50963243	rs2904155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.2		rs2904155-?	NR	3E-16				NR [~ 8900000] (imputed)	N
973	chr20	50976154	50976155	rs4811334	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	20q13.2		rs4811334-T	0.2256	3E-7		0.44		Illumina [7608150]	N
973	chr20	50981236	50981237	rs11697492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	20q13.2	RP4-723E3.1	rs11697492-A	NR	3E-8		0.0306862	[0.02-0.042] unit increase	Affymetrix [323858] (imputed)	N
973	chr20	50981236	50981237	rs11697492	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	20q13.2	RP4-723E3.1	rs11697492-A	NR	2E-8		0.0308225	[0.02-0.042] unit increase	Affymetrix [127266] (imputed)	N
973	chr20	50981236	50981237	rs11697492	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.2	NR	rs11697492-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
973	chr20	50981944	50981945	rs16996700	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20q13.2	NR	rs16996700-T	NR	2E-12		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
973	chr20	50981944	50981945	rs16996700	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.2	ZFP64	rs16996700-T	0.7297	9E-6	(EA, women)	0.0217	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr20	50981944	50981945	rs16996700	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.2	ZFP64	rs16996700-T	0.7297	2E-8	(EA)	0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr20	50981944	50981945	rs16996700	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.2	ZFP64	rs16996700-T	0.7287	2E-9	(EA)	0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr20	50981944	50981945	rs16996700	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	20q13.2	ZFP64	rs16996700-T	0.7287	1E-8	(EA, women)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
973	chr20	50982869	50982870	rs6021889	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.2	NA	rs6021889-A	0.7102	2E-27		0.0203	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
973	chr20	50982869	50982870	rs6021889	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q13.2	NR	rs6021889-A	0.7102	2E-27		0.0203	[0.017-0.024] unit increase	NR [~ 27400000] (imputed)	N
973	chr20	50985289	50985290	rs742760	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q13.2	NR	rs742760-A	0.8155	2E-8		1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
973	chr20	50986298	50986299	rs13037010	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	20q13.2	NR	rs13037010-A	0.1795	3E-24		0.0235	[0.019-0.028] unit decrease	NR [~ 27400000] (imputed)	N
974	chr20	50999626	50999627	rs2426439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs2426439-T	NR	4E-11		0.0193929	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
974	chr20	50999626	50999627	rs2426439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs2426439-T	NR	3E-11		0.0195047	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
974	chr20	50999626	50999627	rs2426439	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.2	NR	rs2426439-C	0.6323	2E-14		0.0365	[0.027-0.046] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
974	chr20	51009513	51009514	rs4811338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs4811338-G	NR	3E-11		0.0202783	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
974	chr20	51009756	51009757	rs4811340	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody positivity	1,769 European ancestry cases, 16,528 European ancestry controls	922 European ancestry cases, 8,068 European ancestry controls	20q13.2	NR	rs4811340-G		6E-7		1.13	[1.07-1.20]	Affymetrix, Illumina [up to 3437411] (imputed)	N
974	chr20	51012163	51012164	rs1884507	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.2	RP4-723E3.1	rs1884507-A	0.8759	1E-10		0.0248	[0.017-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
974	chr20	51024232	51024233	rs4371408	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q13.2	NR	rs4371408-A	0.634	7E-19		0.0164	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
974	chr20	51026283	51026284	rs6013453	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.2	NR	rs6013453-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
974	chr20	51028069	51028070	rs6013454	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.2		rs6013454-C	NR	9E-9		0.0136	[0.0089-0.0183] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
974	chr20	51031168	51031169	rs6021914	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.2	ZFP64	rs6021914-T	0.63443	1E-9		0.0120633	[0.0082-0.016] unit decrease	Affymetrix [NR] (imputed)	N
974	chr20	51033680	51033681	rs4809906	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.2	NR	rs4809906-G	0.6206	5E-18		0.0345	[0.027-0.042] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
974	chr20	51034267	51034268	rs6096939	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	20q13.2	NR	rs6096939-C	0.3665	2E-18		0.0163	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
974	chr20	51046506	51046507	rs6096947	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	20q13.2	intergenic	rs6096947-?	NR	2E-9		0.0165	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
974	chr20	51065853	51065854	rs17806224	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.2	NA	rs17806224-A	0.1808	8E-32		0.026	[0.022-0.03] unit decrease	NR [~ 27400000] (imputed)	N
974	chr20	51065853	51065854	rs17806224	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	20q13.2	NA	rs17806224-A	0.1808	8E-32		0.026	[0.022-0.03] unit decrease	NR [~ 27400000] (imputed)	N
974	chr20	51086642	51086643	rs6068203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20q13.2		rs6068203-T	NR	2E-8		0.01	[0.0065-0.0135] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
974	chr20	51087861	51087862	rs6091540	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20q13.2	NR	rs6091540-C	NR	4E-16		0.023	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
974	chr20	51087861	51087862	rs6091540	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20q13.2	ZFP64, LINC01524	rs6091540-T	0.27	5E-13		0.018	[0.012-0.024] unit decrease	Illumina [6108953] (imputed)	N
974	chr20	51087861	51087862	rs6091540	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.2	ZFP64	rs6091540-T	0.2731	3E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
974	chr20	51087861	51087862	rs6091540	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	20q13.2	ZFP64	rs6091540-T	0.2731	4E-6		0.0192	[0.011-0.027] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
974	chr20	51087861	51087862	rs6091540	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	20q13.2	ZFP64	rs6091540-T	0.2731	1E-6		0.0177	[0.011-0.025] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
974	chr20	51087861	51087862	rs6091540	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	20q13.2	NR	rs6091540-T	0.277840319422908	1E-9		0.018517034	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
974	chr20	51087861	51087862	rs6091540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20q13.2	ZFP64	rs6091540-C	0.725	2E-8		0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
974	chr20	51087861	51087862	rs6091540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20q13.2	ZFP64	rs6091540-C	0.723	8E-8	(EA)	0.019	[0.012-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
974	chr20	51087861	51087862	rs6091540	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20q13.2	ZFP64	rs6091540-C	0.721	2E-11	(EA, women)	0.03	[0.021-0.038] kg/m2 increase	Affymetrix, Illumina [2550021]	N
974	chr20	51092995	51092996	rs13041126	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	20q13.2	MRPS33P4	rs13041126-T	0.72	2E-8	(Obesity class I)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
975	chr20	51148655	51148656	rs11907932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.2		rs11907932-G	NR	1E-27		0.0188	[0.015-0.022] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
975	chr20	51148655	51148656	rs11907932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	20q13.2		rs11907932-G	0.413298	3E-10		0.0173615	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
975	chr20	51148655	51148656	rs11907932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.2		rs11907932-G	NR	2E-22		0.0193	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
975	chr20	51148655	51148656	rs11907932	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	20q13.2		rs11907932-A	0.68	8E-8		0.011	nmol/L decrease	NR [NR] (imputed)	N
975	chr20	51148655	51148656	rs11907932	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	20q13.2		rs11907932-A	0.68	7E-11				NR [NR] (imputed)	N
975	chr20	51148655	51148656	rs11907932	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	20q13.2		rs11907932-A	0.68	2E-17		0.014	% increase	NR [NR] (imputed)	N
975	chr20	51156431	51156432	rs6068216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs6068216-A	NR	3E-8		0.0175469	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
975	chr20	51156431	51156432	rs6068216	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs6068216-A	NR	2E-8		0.0176931	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
975	chr20	51167168	51167169	rs6068235	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	20q13.2	LINC01524	rs6068235-A	NR	8E-6		0.18046	NR unit decrease	NR [560698] (imputed)	N
975	chr20	51170575	51170575	rs201015465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q13.2		rs201015465-TTATAAA	NR	1E-8		0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
975	chr20	51182263	51182264	rs2207195	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs2207195-?	NR	4E-9				Affymetrix [NR]	N
975	chr20	51191638	51191639	rs34957979	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.2	NR	rs34957979-?	NR	7E-6	(female)	0.13756	[0.078-0.198] unit decrease	Affymetrix [7794483] (imputed)	N
975	chr20	51191638	51191639	rs34957979	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.2	NR	rs34957979-?	NR	1E-7		0.14689	[0.092-0.202] unit decrease	Affymetrix [7794483] (imputed)	N
975	chr20	51195386	51195387	rs66460909	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.2	ZFP64	rs66460909-G	0.8077	3E-19		0.0156925	[0.012-0.019] unit increase	Affymetrix [12370749]	N
975	chr20	51195386	51195387	rs66460909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.2		rs66460909-?	NR	5E-27				NR [~ 8900000] (imputed)	N
975	chr20	51195931	51195932	rs73142879	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs73142879-?	NR	7E-26				Affymetrix [~ 8270000] (imputed)	N
975	chr20	51204733	51204733	rs764311894	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	20q13.2	LINC01524	rs764311894-CTTT	0.169241	5E-10		0.0569809	[0.039-0.075] unit decrease	Affymetrix [9463307] (imputed)	N
975	chr20	51205233	51205234	rs17733118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs17733118-T	NR	5E-8		0.0185524	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
975	chr20	51208948	51208949	rs6063840	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	20q13.2	LINC01524	rs6063840-G	NR	8E-6		0.17969	NR unit decrease	NR [560698] (imputed)	N
975	chr20	51223593	51223594	rs34454109	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.2	TSHZ2	rs34454109-A	0.7709	7E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
975	chr20	51235612	51235613	rs6068280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	20q13.2	NR	rs6068280-G	NR	3E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
975	chr20	51235612	51235613	rs6068280	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q13.2	TSHZ2	rs6068280-A	0.325178	6E-11		0.0139527	[0.0098-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
975	chr20	51236891	51236892	rs6097050	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.2	NR	rs6097050-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
976	chr20	51257272	51257272	rs140120854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs140120854-C	NR	2E-9		0.0177852	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
976	chr20	51257272	51257272	rs140120854	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	RP4-723E3.1	rs140120854-C	NR	2E-9		0.0178506	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
976	chr20	51261413	51261414	rs1996928	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	20q13.2	LINC01524	rs1996928-G	0.744975	2E-10	(EA)	0.00904149	[0.0063-0.0118] unit increase	Affymetrix [~ 8800000] (imputed)	N
976	chr20	51263785	51263786	rs856404	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.2	RP4-723E3.1	rs856404-A	0.6427	3E-9		0.0131	[0.0088-0.0174] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
976	chr20	51268564	51268565	rs6068290	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.2		rs6068290-A	0.655	2E-8	(conditional-joint)	0.0083	[0.0054-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
976	chr20	51278830	51278831	rs715433	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.2	NR	rs715433-?		1E-6				Illumina [4322238] (imputed)	N
976	chr20	51291861	51291862	rs41303939	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AL031674.1	rs41303939-?	NR	2E-8	(female)	3.09082	[NR] unit decrease	Affymetrix [NR] (imputed)	N
976	chr20	51292923	51292924	rs6022039	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	20q13.2	ZFP64, TSHZ2	rs6022039-T	NR	3E-8	(Serotonin)	0.549885	[0.36-0.74] unit increase	Illumina [up to 9281895] (imputed)	N
976	chr20	51299883	51299884	rs6091570	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.2		rs6091570-A	0.3491	3E-8		0.0081	[0.0052-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
976	chr20	51318350	51318351	rs6013509	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	20q13.2	TSHZ2	rs6013509-A	NR	1E-10		0.06	[0.05-0.08] g/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
976	chr20	51332267	51332268	rs74555583	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	20q13.2	NR	rs74555583-A	0.08551	3E-8		0.017	[0.011-0.023] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
977	chr20	51470826	51470827	rs142496143	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20q13.2	RP11-80K6.2	rs142496143-A	0.0252	9E-6		0.1429	[0.08-0.206] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
977	chr20	51510925	51510926	rs1609598	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20q13.2	TSHZ2	rs1609598-C	0.648833	3E-8		0.0122201	[0.0079-0.0165] unit increase	NR [16516521] (imputed)	N
978	chr20	51548301	51548302	rs6126698	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	20q13.2	TSHZ2	rs6126698-?	NR	8E-6		1.0638298	[1.03-1.1]	NR [7424691] (imputed)	N
978	chr20	51557160	51557161	rs6097169	23517042	Melen E	2013-04-01	Clin Exp Allergy	Genome-wide association study of body mass index in 23 000 individuals with and without asthma.	Body mass index in non-asthmatics	6,025 European ancestry children, 567 children,  6,334 European ancestry adult individuals, 2,050 adult individuals	NA	20q13.2	intergenic	rs6097169-A	0.10	5E-7	(Children)			Illumina [up to 527642]	N
978	chr20	51575909	51575910	rs6013578	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20q13.2		rs6013578-A	0.937	1E-9		0.016	[0.01-0.022] unit increase	NR [NR] (imputed)	N
978	chr20	51575909	51575910	rs6013578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs6013578-G	NR	5E-10		0.0367423	[0.025-0.048] unit increase	Affymetrix [319769] (imputed)	N
978	chr20	51575909	51575910	rs6013578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs6013578-G	NR	5E-10		0.0367043	[0.025-0.048] unit increase	Affymetrix [319769] (imputed)	N
978	chr20	51575911	51575912	rs6013579	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.2	NR	rs6013579-T	0.0639	1E-7		0.0117484	[0.0074-0.0161] unit decrease	NR [9732723] (imputed)	N
978	chr20	51577025	51577026	rs2904292	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	20q13.2	LINC01524, TSH7Z2	rs2904292-G	NR	8E-6		0.834	[0.47-1.2] unit decrease	Illumina [4774020] (imputed)	N
978	chr20	51583982	51583983	rs10485813	20732625	Neale BM	2010-08-01	J Am Acad Child Adolesc Psychiatry	Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	2,064 European ancestry trios, 896 European ancestry cases, 2,455 European ancestry controls	NA	20q13.2	intergenic	rs10485813-A	NR	8E-6				Affymetrix, Illumina, Perlegen [1206462] (imputed)	N
978	chr20	51588846	51588847	rs74963256	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.2	TSHZ2	rs74963256-T	0.906503	2E-8		0.0191768	[0.012-0.026] unit increase	Affymetrix [NR] (imputed)	N
978	chr20	51588846	51588847	rs74963256	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q13.2	NR	rs74963256-T	0.904	5E-7		0.0171	[0.01-0.024] unit decrease	NR [~ 27400000] (imputed)	N
978	chr20	51617948	51617949	rs2752914	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	20q13.2	TSHZ2	rs2752914-T	0.5966	1E-8		0.011349284	[0.0075-0.0152] unit increase	Illumina [9339358] (imputed)	N
978	chr20	51620300	51620301	rs2252098	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.2		rs2252098-T	0.4703	5E-8		0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
978	chr20	51620856	51620857	rs2252115	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.2	NR	rs2252115-G	0.4284	1E-9		0.0237	[0.016-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
978	chr20	51621921	51621922	rs2252221	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.2	NR	rs2252221-G	0.5314	4E-8		0.0248	[0.016-0.034] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
978	chr20	51622084	51622085	rs2252225	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	20q13.2	TSHZ2	rs2252225-T	0.591	4E-10		0.0075	[0.0051-0.0099] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
978	chr20	51627633	51627634	rs2255805	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	20q13.2	NR	rs2255805-T	NR	2E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
979	chr20	51672309	51672310	rs4356720	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	20q13.2	TSHZ2	rs4356720-A	0.8535	9E-6		0.2929	[0.16-0.42] unit decrease	Illumina [at least 4683137] (imputed)	N
979	chr20	51687807	51687808	rs17389284	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	20q13.2	TSHZ2	rs17389284-C	0.242	5E-9		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
979	chr20	51687807	51687808	rs17389284	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	20q13.2	NR	rs17389284-C	0.247	1E-8		0.00905474	[0.0059-0.0122] unit increase	NR [~ 9732723] (imputed)	N
979	chr20	51691898	51691899	rs1936965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1936965-T	NR	2E-9		0.0183479	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51691898	51691899	rs1936965	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1936965-T	NR	9E-10		0.0186226	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51696091	51696092	rs1892204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1892204-T	NR	1E-26		0.0304653	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51696091	51696092	rs1892204	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1892204-T	NR	2E-17		0.0245583	[0.019-0.03] unit decrease	Affymetrix [321169] (imputed)	N
979	chr20	51696095	51696096	rs1892203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1892203-T	NR	8E-27		0.0306045	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51696095	51696096	rs1892203	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1892203-T	NR	1E-16		0.023799	[0.018-0.029] unit decrease	Affymetrix [321114] (imputed)	N
979	chr20	51696095	51696096	rs1892203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.2	NR	rs1892203-?	NR	6E-25				Affymetrix [~ 8270000] (imputed)	N
979	chr20	51696095	51696096	rs1892203	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.2	NR	rs1892203-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
979	chr20	51696095	51696096	rs1892203	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.2		rs1892203-?	NR	8E-25				NR [~ 8900000] (imputed)	N
979	chr20	51696710	51696711	rs2747397	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TSHZ2	rs2747397-?	NR	8E-12		1.61856	[NR] unit decrease	Affymetrix [NR] (imputed)	N
979	chr20	51696710	51696711	rs2747397	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TSHZ2	rs2747397-?	NR	2E-10	(male)	1.41964	[NR] unit decrease	Affymetrix [NR] (imputed)	N
979	chr20	51699188	51699189	rs910382	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	20q13.2	NR	rs910382-G	0.5	2E-25		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
979	chr20	51699188	51699189	rs910382	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	20q13.2	NR	rs910382-G	0.5	5E-8				Affymetrix [2446094] (imputed)	N
979	chr20	51699188	51699189	rs910382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q13.2	NR	rs910382-A	0.4937	3E-25		0.0187	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
979	chr20	51699188	51699189	rs910382	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.2	NA	rs910382-A	0.4935	2E-21		0.0169	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
979	chr20	51707665	51707666	rs2747399	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q13.2	NR	rs2747399-A	0.4933	4E-21		0.0168	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
979	chr20	51707931	51707932	rs2747400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs2747400-T	NR	2E-9		0.0176772	[0.012-0.023] unit decrease	Affymetrix [321788] (imputed)	N
979	chr20	51708339	51708340	rs62206548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs62206548-T	NR	3E-10		0.0236088	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51708339	51708340	rs62206548	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs62206548-T	NR	5E-10		0.0232744	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
979	chr20	51712677	51712678	rs28710106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs28710106-T	NR	3E-16		0.0368964	[0.028-0.046] unit increase	Affymetrix [319769] (imputed)	N
979	chr20	51712677	51712678	rs28710106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs28710106-T	NR	2E-16		0.0370655	[0.028-0.046] unit increase	Affymetrix [319769] (imputed)	N
979	chr20	51712677	51712678	rs28710106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs28710106-T	NR	5E-14		0.0342443	[0.025-0.043] unit increase	Affymetrix [321114] (imputed)	N
979	chr20	51712677	51712678	rs28710106	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs28710106-T	NR	3E-14		0.03458	[0.026-0.043] unit increase	Affymetrix [321169] (imputed)	N
979	chr20	51712677	51712678	rs28710106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.2	NR	rs28710106-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
979	chr20	51712677	51712678	rs28710106	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.2	NR	rs28710106-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
980	chr20	51778122	51778123	rs118174081	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20q13.2	NR	rs118174081-?	NR	3E-6				NR [up to 8466825] (imputed)	N
980	chr20	51778969	51778970	rs1293401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1293401-A	NR	2E-8		0.0297133	[0.019-0.04] unit increase	Affymetrix [319769] (imputed)	N
980	chr20	51778969	51778970	rs1293401	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.2	TSHZ2	rs1293401-A	NR	1E-8		0.029956	[0.02-0.04] unit increase	Affymetrix [319769] (imputed)	N
980	chr20	51779040	51779041	rs148188030	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NRG4	5,357 Icelandic ancestry individuals	NA	20q13.2		rs148188030-G	0.01193	3E-13		0.1071	[0.078-0.136] unit increase	Illumina [7506463] (imputed)	N
980	chr20	51788717	51788718	rs2801008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.2		rs2801008-?	NR	5E-8				NR [~ 8900000] (imputed)	N
980	chr20	51797352	51797353	rs1293386	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	20q13.2	TSHZ2	rs1293386-?	0.1849	7E-6		6.366	[NR]	Affymetrix [559609]	N
980	chr20	51844002	51844004	rs10574252	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	20q13.2		rs10574252-A	NR	7E-6		1.33	[1.18-1.51]	Illumina [7105229] (imputed)	N
980	chr20	51846631	51846632	rs59338997	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	20q13.2	TSHZ2	rs59338997-C	NR	3E-6		0.12767585	[0.072-0.183] unit decrease	Illumina [> 6200000] (imputed)	N
981	chr20	51906276	51906277	rs200639	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	20q13.2	NR	rs200639-G	0.646	9E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	4.157	[NR]	Affymetrix [> 650000] (imputed)	N
981	chr20	51935554	51935555	rs200649	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	20q13.2	TSHZ2	rs200649-T	NR	3E-6		0.116	[0.067-0.165] unit decrease	Illumina [NR] (imputed)	N
981	chr20	51935554	51935555	rs200649	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (adjusted lung density)	4,427 European ancestry individuals, 1,158 African American individuals	NA	20q13.2	TSHZ2	rs200649-T	0.825	4E-6	(EA)	0.124	[0.071-0.177] unit decrease	Illumina [NR] (imputed)	N
982	chr20	52082476	52082477	rs6022494	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs6022494-?	NR	2E-12				Affymetrix [NR]	N
982	chr20	52101220	52101221	rs7262233	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	20q13.2	TSHZ2, LOC101927770, ZNF217, LOC105372672	rs7262233-?	NR	9E-6	(EA)	0.0101	[0.0097-0.0105] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
983	chr20	52167513	52167514	rs79054049	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	20q13.2		rs79054049-C	0.024279	7E-7		1.2548627	NR	Affymetrix [7846216] (imputed)	N
983	chr20	52170782	52170783	rs13043901	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	20q13.2	LOC101927770, TSHZ2, ZNF217	rs13043901-?	NR	5E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
983	chr20	52171240	52171241	rs2766664	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	20q13.2		rs2766664-?	NR	4E-11		0.93	[0.91-0.95]	Illumina [5170515] (imputed)	N
983	chr20	52171240	52171241	rs2766664	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	20q13.2	LOC101927770, ZNF217	rs2766664-?	NR	1E-11		1.08	[1.06-1.11]	Affymetrix [74888535] (imputed)	N
983	chr20	52172140	52172141	rs2766666	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	20q13.2	NR	rs2766666-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
983	chr20	52172403	52172404	rs2766667	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	20q13.2	LOC101927770	rs2766667-T	0.26	2E-13				NR [> 9500000] (imputed)	N
983	chr20	52172403	52172404	rs2766667	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	20q13.2	TSHZ2, ZNF217	rs2766667-T	0.254	1E-7		1.046	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
983	chr20	52172403	52172404	rs2766667	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	20q13.2	TSHZ2, ZNF217	rs2766667-T	NR	5E-10		1.049	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
983	chr20	52175810	52175811	rs73140002	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	20q13.2		rs73140002-?	NR	8E-7		1.2585	[1.17-1.35]	NR [680312]	N
983	chr20	52175810	52175811	rs73140002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.2	RP4-724E16.2	rs73140002-C	0.030618	6E-15		0.050562277	[0.038-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52176104	52176105	rs6068583	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	20q13.2	Intergenic	rs6068583-?		3E-7		1.554	[NR]	Affymetrix [492217] (imputed)	N
983	chr20	52180629	52180630	rs13040446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.2	RP4-724E16.2	rs13040446-C	0.026596	1E-9		0.042576674	[0.029-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52184943	52184944	rs1555926	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	20q13.2	ZNF217	rs1555926-C	0.199959	7E-12		1.0531019	1.03762334240064-1.06881142590848]	NR [9572556] (imputed)	N
983	chr20	52184943	52184944	rs1555926	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	20q13.2	NR	rs1555926-C	0.2072	3E-14		1.057	[1.042-1.071]	Affymetrix [15688218] (imputed)	N
983	chr20	52184943	52184944	rs1555926	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	20q13.2	ZNF217	rs1555926-C	0.2054	2E-8		1.079	[1.052-1.107]	Affymetrix [15688218] (imputed)	N
983	chr20	52186836	52186837	rs61744628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.2	RP4-724E16.2	rs61744628-A	0.027318	6E-9		0.03935803	[0.026-0.053] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52186836	52186837	rs61744628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.2	RP4-724E16.2	rs61744628-A	0.027322	6E-15		0.053773135	[0.04-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52186836	52186837	rs61744628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.2	RP4-724E16.2	rs61744628-A	0.027305	1E-9		0.0410594	[0.029-0.053] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52186836	52186837	rs61744628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.2	NR	rs61744628-A	0.027143000000000028	2E-11		0.0167873	[0.012-0.022] unit increase	Affymetrix [16582909] (imputed)	N
983	chr20	52186836	52186837	rs61744628	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.2	NR	rs61744628-A	0.027143000000000028	6E-8		0.0155566	[0.0099-0.0212] unit increase	Affymetrix [16582965] (imputed)	N
983	chr20	52191199	52191200	rs6063965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q13.2		rs6063965-A	NR	2E-11		0.0242	[0.017-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
983	chr20	52191199	52191200	rs6063965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs6063965-A	0.105045	6E-15				Affymetrix, Illumina [23472807] (imputed)	N
983	chr20	52191199	52191200	rs6063965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.2	NR	rs6063965-A	0.113732	3E-14		0.022749	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
983	chr20	52207062	52207063	rs4811444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.2		rs4811444-?	NR	7E-10				NR [~ 8900000] (imputed)	N
983	chr20	52207290	52207291	rs66678311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.2	ZNF217	rs66678311-G	0.111989	3E-9		0.021252677	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52207290	52207291	rs66678311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.2	ZNF217	rs66678311-G	0.111991	1E-9		0.02152793	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52207290	52207291	rs66678311	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.2	ZNF217	rs66678311-G	0.111984	6E-10		0.021952888	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52208355	52208356	rs2766678	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	20q13.2	ZNF217	rs2766678-G	0.21	5E-18		1.057	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
983	chr20	52209880	52209881	rs113303376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.2		rs113303376-A	NR	2E-8		0.0174	[0.011-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
983	chr20	52210625	52210626	rs2766679	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.2	ZNF217	rs2766679-G	0.364193	3E-12		0.016712736	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52210625	52210626	rs2766679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs2766679-G	0.375035	4E-14				Affymetrix, Illumina [17210439] (imputed)	N
983	chr20	52210625	52210626	rs2766679	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.2	NR	rs2766679-G	0.364622	1E-12		0.015227	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
983	chr20	52212272	52212273	rs2766680	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	20q13.2		rs2766680-?	NR	1E-21				NR [~ 8900000] (imputed)	N
983	chr20	52222105	52222106	rs151305716	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	20q13.2		rs151305716-C	0.984	5E-26		0.48	[-0.57--0.39] % decrease	Affymetrix [NR] (imputed)	N
983	chr20	52222105	52222106	rs151305716	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.2	ZNF217	rs151305716-T	0.015825	4E-19		0.08342658	[0.065-0.102] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52222105	52222106	rs151305716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs151305716-C	0.985096	5E-21				Affymetrix, Illumina [24332387] (imputed)	N
983	chr20	52222105	52222106	rs151305716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.2	NR	rs151305716-C	0.984516	2E-23		0.07906	[0.064-0.095] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
983	chr20	52222105	52222106	rs151305716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs151305716-C	0.985089	5E-43				Affymetrix, Illumina [24246363] (imputed)	N
983	chr20	52222105	52222106	rs151305716	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs151305716-C	0.984792	2E-33				Affymetrix, Illumina [20825802] (imputed)	N
983	chr20	52222105	52222106	rs151305716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.2		rs151305716-?	NR	9E-26				NR [~ 8900000] (imputed)	N
983	chr20	52222105	52222106	rs151305716	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.2		rs151305716-?	NR	2E-40				NR [~ 8900000] (imputed)	N
983	chr20	52222105	52222106	rs151305716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20q13.2	ZNF217	rs151305716-T	0.0168	6E-11		0.0958043	[0.067-0.125] unit decrease	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52222105	52222106	rs151305716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q13.2	ZNF217	rs151305716-T	0.0169	8E-17		0.1212118	[0.093-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52222105	52222106	rs151305716	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q13.2	ZNF217	rs151305716-T	0.0168	2E-12		0.1026999	[0.074-0.131] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52230030	52230038	rs145910606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.2		rs145910606-T	NR	8E-20		0.0761	[0.06-0.092] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
983	chr20	52230030	52230038	rs145910606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.2		rs145910606-T	NR	6E-33		0.1159	[0.097-0.135] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
983	chr20	52230030	52230038	rs145910606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.2		rs145910606-T	NR	2E-30		0.1107	[0.092-0.13] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016726	1E-49		0.13636346	[0.12-0.15] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016728	9E-36		0.11505602	[0.097-0.133] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016769	1E-21		0.08726582	[0.069-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016728	7E-19		0.0821675	[0.064-0.1] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016777	1E-41		0.122983	[0.11-0.14] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016788	3E-33		0.10977594	[0.092-0.128] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016727	2E-24		0.09435502	[0.076-0.112] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0167350000000001	3E-52		0.13937742	[0.12-0.16] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.016738	3E-42		0.12475015	[0.11-0.14] unit increase	Affymetrix [93095623] (imputed)	N
983	chr20	52230030	52230038	rs145910606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0174	1E-19		0.1328789	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52230030	52230038	rs145910606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0174	3E-14		0.1112423	[0.083-0.14] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52230030	52230038	rs145910606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0174	2E-9		0.08746605	[0.059-0.116] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52230030	52230038	rs145910606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0174	1E-19		0.132824	[0.1-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52230030	52230038	rs145910606	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20q13.2	AC005808.3	rs145910606-T	0.0174	4E-16		0.1191461	[0.09-0.148] unit increase	Affymetrix [~ 2500000] (imputed)	N
983	chr20	52268994	52268995	rs2041278	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.2	ZNF217	rs2041278-A	0.472	6E-6	(IGFBP-1 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
983	chr20	52274007	52274008	rs6022641	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 36)	4,680 European ancestry individuals	3,566 European ancestry individuals	20q13.2		rs6022641-C	0.341248901	3E-10				Illumina [7417619] (imputed)	N
983	chr20	52287609	52287610	rs12481286	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20q13.2	NR	rs12481286-T	0.2403	1E-7	(EA)	0.0407	[0.026-0.056] unit increase	Illumina [~ 11800000] (imputed)	N
983	chr20	52296848	52296849	rs13039563	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	20q13.2	NR	rs13039563-?	NR	1E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
983	chr20	52296848	52296849	rs13039563	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	20q13.2	NR	rs13039563-A	0.24	3E-9		1.04	[1.03-1.06]	Illumina [~ 10800000] (imputed)	N
984	chr20	52349891	52349892	rs6091737	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	20q13.2	intergenic	rs6091737-T	NR	6E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
984	chr20	52377819	52377820	rs183956482	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	20q13.2	NR	rs183956482-?	NR	3E-6		0.4544	[0.25-0.66] unit increase	Illumina [at least 560000] (imputed)	N
984	chr20	52421030	52421031	rs6097585	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	20q13.2	AC006076.1	rs6097585-C	0.6242	6E-6		0.0382	[0.022-0.055] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
984	chr20	52421030	52421031	rs6097585	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	20q13.2	AC006076.1	rs6097585-C	0.6243	2E-6		0.0405	[0.024-0.057] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
984	chr20	52424997	52424998	rs4811470	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.2	NR	rs4811470-?	NR	4E-9	(right inferior parietal)			NR [9227495] (imputed)	N
985	chr20	52429794	52429795	rs6013806	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.2	NR	rs6013806-?	NR	1E-8	(left inferior parietal)			NR [9227495] (imputed)	N
985	chr20	52429949	52429950	rs6022773	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.2	NR	rs6022773-?	NR	4E-6				Illumina [4322238] (imputed)	N
985	chr20	52432450	52432451	rs4437022	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	20q13.2	NR	rs4437022-A	0.4538	2E-25	(Inferior Parietal)	31.700712	[25.73-37.67] unit decrease	Affymetrix, Illumina [NR]	N
985	chr20	52447302	52447303	rs6022786	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	20q13.2	FAM178B, FAHD2B, ANKRD36, COX5B, ACTR1B, ZAP70, TMEM131	rs6022786-?		6E-12				NR [7428630] (imputed)	N
985	chr20	52447302	52447303	rs6022786	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	20q13.2	ABCG2	rs6022786-?		2E-11				NR [7428630] (imputed)	N
985	chr20	52447302	52447303	rs6022786	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	20q13.2	NR	rs6022786-A	0.4147	6E-13	(Superior Parietal)	20.937141	[15.24-26.63] unit increase	Affymetrix, Illumina [NR]	N
985	chr20	52447302	52447303	rs6022786	22885925	Shi Y	2012-08-12	Nat Genet	Genome-wide association study identifies eight new risk loci for polycystic ovary syndrome.	Polycystic ovary syndrome	2,254 Han Chinese ancestry cases, 3,001 Han Chinese ancestry controls	8,226 Han Chinese ancestry cases, 7,578 Han Chinese ancestry controls	20q13.2	SUMO1P1	rs6022786-A	0.339	2E-9		1.13	[NR]	Affymetrix [NR] (imputed)	N
985	chr20	52448935	52448936	rs6097618	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.2		rs6097618-C	0.44	9E-83		19.27	z score increase	Affymetrix [9061022] (imputed)	N
985	chr20	52448935	52448936	rs6097618	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q13.2		rs6097618-C	0.44	2E-25		10.44	z score increase	Affymetrix [9061022] (imputed)	N
985	chr20	52448935	52448936	rs6097618	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q13.2		rs6097618-C	0.44	1E-55		15.73	z score increase	Affymetrix [9061022] (imputed)	N
985	chr20	52448935	52448936	rs6097618	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q13.2	NR	rs6097618-C	0.4415	1E-17				NR [9056863] (imputed)	N
985	chr20	52448935	52448936	rs6097618	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q13.2	NR	rs6097618-C	0.4415	1E-17				NR [9056863] (imputed)	N
985	chr20	52448935	52448936	rs6097618	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	20q13.2		rs6097618-?	NR	6E-47				NR [9705931] (imputed)	N
985	chr20	52448935	52448936	rs6097618	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	20q13.2	SUMO1P1	rs6097618-?		2E-17	(Inferior parietal)			Affymetrix, Illumina [NR] (imputed)	N
985	chr20	52448935	52448936	rs6097618	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.2	NR	rs6097618-?	NR	9E-11	(left inferior parietal)			NR [9227495] (imputed)	N
985	chr20	52448935	52448936	rs6097618	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.2	NR	rs6097618-?	NR	3E-8	(right inferior parietal)			NR [9227495] (imputed)	N
985	chr20	52455204	52455205	rs6091758	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (early onset)	6,988 European ancestry cases, 44,256 European ancestry controls	NA	20q13.2	BCAS1	rs6091758-G	NR	6E-6		1.1	[NR]	Illumina [20370935] (imputed)	N
985	chr20	52455204	52455205	rs6091758	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer (advanced)	15,167 European ancestry cases, 58,308 European ancestry controls	NA	20q13.2	BCAS1	rs6091758-G	NR	2E-7		1.08	[NR]	Illumina [20370935] (imputed)	N
985	chr20	52455204	52455205	rs6091758	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	20q13.2	BCAS1	rs6091758-G	0.47	6E-18		1.07	[1.06-1.09]	Illumina [20370935] (imputed)	N
985	chr20	52456444	52456445	rs6126982	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	20q13.2	HINT1, LYRM7, CDC42SE2, RAPGEF6, CTC-432M15.3, FNIP1, ACSL6, IL3, CSF2, P4HA2, PDLIM4, SLC22A4, SLC22A5, C5orf56	rs6126982-?		1E-20				NR [7428630] (imputed)	N
985	chr20	52464696	52464697	rs6126985	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	20q13.2	NR	rs6126985-?		9E-22				NR [7428630] (imputed)	N
985	chr20	52464718	52464719	rs6126986	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	20q13.2	NR	rs6126986-C	0.49267198	9E-6		1.0787308	[1.04-1.12]	Affymetrix, Illumina [20400945] (imputed)	N
985	chr20	52464718	52464719	rs6126986	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.2	NR	rs6126986-C	NR	5E-16		1.058	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
985	chr20	52466099	52466100	rs10432728	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.2	NR	rs10432728-?	NR	2E-6		0.0082699	[0.0049-0.0117] unit increase	Affymetrix [805426] (imputed)	N
985	chr20	52468965	52468966	rs4811476	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	20q13.2	NR	rs4811476-T	0.4913	2E-11	(Pericalcarine)	7.0574164	[5-9.11] unit increase	Affymetrix, Illumina [NR]	N
985	chr20	52532696	52532696	rs11480320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20q13.2		rs11480320-AT	NR	4E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
985	chr20	52535399	52535400	rs6022850	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20q13.2	NR	rs6022850-C	0.552785	9E-11		0.0125912	[0.0088-0.0164] unit decrease	Affymetrix [15000001]	N
985	chr20	52540605	52540606	rs6127015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20q13.2		rs6127015-C	NR	4E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
985	chr20	52542597	52542598	rs6022854	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	20q13.2	NR	rs6022854-?	NR	3E-6		1433.271	NR unit increase	Illumina [2379855]	N
985	chr20	52547659	52547660	rs6068729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.2		rs6068729-?	NR	9E-25				NR [~ 8900000] (imputed)	N
985	chr20	52547659	52547660	rs6068729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.2		rs6068729-?	NR	7E-13				NR [~ 8900000] (imputed)	N
985	chr20	52549910	52549910	rs373381313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.2	BCAS1	rs373381313-CT	0.453112	1E-10		0.015138269	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
985	chr20	52549910	52549910	rs373381313	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.2	BCAS1	rs373381313-CT	0.453043	2E-11		0.015613657	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
985	chr20	52551883	52551884	rs16998572	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	20q13.2	BCAS1	rs16998572-?	NR	8E-7				Affymetrix, Illumina [NR] (imputed)	N
985	chr20	52551883	52551884	rs16998572	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder (age of onset <21) or attention deficit hyperactivity disorder	5,167 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	20q13.2	BCAS1	rs16998572-?		8E-6				Affymetrix, Illumina [NR]	N
985	chr20	52553881	52553882	rs6022858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q13.2	BCAS1	rs6022858-T	0.233906	1E-17		0.022626169	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr20	52553881	52553882	rs6022858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.2	BCAS1	rs6022858-T	0.233791	3E-16		0.021505399	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
985	chr20	52553881	52553882	rs6022858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.2	BCAS1	rs6022858-T	0.233815	3E-14		0.0199509	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
985	chr20	52553881	52553882	rs6022858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs6022858-C	0.765172	3E-23				Affymetrix, Illumina [22063850] (imputed)	N
985	chr20	52553881	52553882	rs6022858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q13.2	NR	rs6022858-C	0.765526	2E-24		0.022786	[0.018-0.027] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
985	chr20	52553881	52553882	rs6022858	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	20q13.2	BCAS1	rs6022858-T	0.2335	3E-11		0.02811117	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
985	chr20	52553883	52553884	rs6022859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.2	BCAS1	rs6022859-T	0.233654	2E-9		0.015964452	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
985	chr20	52554491	52554492	rs16998583	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	20q13.2	BCAS1	rs16998583-C	0.826	2E-8		0.014271697	[0.0093-0.0193] unit decrease	Illumina [9339358] (imputed)	N
986	chr20	52560125	52560126	rs1055253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.2		rs1055253-?	NR	3E-15				NR [~ 8900000] (imputed)	N
986	chr20	52570004	52570005	rs141158222	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	20q13.2	BCAS1	rs141158222-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
986	chr20	52572831	52572833	rs375506010	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20q13.2	NR	rs375506010-T	0.1809	5E-6	(EA)	0.0395	[0.022-0.057] unit increase	Illumina [~ 11800000] (imputed)	N
986	chr20	52610495	52610496	rs2276498	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	20q13.2	NR	rs2276498-?	NR	7E-6		1.3111	[NR]	Affymetrix [722112]	N
986	chr20	52635325	52635326	rs76311467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q13.2		rs76311467-?	NR	2E-49				NR [~ 8900000] (imputed)	N
986	chr20	52642792	52642793	rs55901013	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	20q13.2	BCAS1	rs55901013-T	0.04725	1E-30		1.214	NR	Affymetrix [9154080] (imputed)	N
986	chr20	52645166	52645167	rs61754122	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	20q13.2	BCAS1	rs61754122-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
986	chr20	52645166	52645167	rs61754122	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	20q13.2	BCAS1	rs61754122-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
986	chr20	52645166	52645167	rs61754122	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	20q13.2	BCAS1	rs61754122-?	1.93199E-4	9E-16				Illumina [~ 244000]	N
986	chr20	52661067	52661068	rs73132911	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	20q13.2	BCAS1	rs73132911-T	0.046	7E-27		0.064	[0.052-0.076] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
986	chr20	52664865	52664866	rs116237187	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	20q13.2	BCAS1	rs116237187-G	0.016	2E-6		3.075	[1.934-4.889]	Affymetrix, Illumina [14074516] (imputed)	N
986	chr20	52678653	52678654	rs459044	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Chloride levels	126,402 Japanese ancestry individuals	NA	20q13.2	BCAS1	rs459044-?	NR	4E-8		0.02254	[0.014-0.031] unit decrease	Illumina [6108953] (imputed)	N
986	chr20	52690902	52690903	rs383469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.2	BCAS1	rs383469-C	0.028616	3E-10		0.042385787	[0.029-0.056] unit increase	Affymetrix [93095623] (imputed)	N
987	chr20	52701292	52701293	rs6064045	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	20q13.2	NR	rs6064045-C	0.521164665033408	7E-6	(IGP29)	0.137	[0.077-0.197] unit decrease	Illumina [~ 2500000] (imputed)	N
987	chr20	52703283	52703284	rs13041834	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	20q13.2	BCAS1	rs13041834-T	0.636	3E-8		1.08	[NR]	Illumina [6603247] (imputed)	N
987	chr20	52711439	52711440	rs181124765	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.2	Intergenic	rs181124765-G	0.999	2E-6	(AA)	1.829	NR unit increase	Illumina [NR] (imputed)	N
987	chr20	52714705	52714706	rs6123359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	20q13.2		rs6123359-G	NR	2E-14		0.0998	[0.074-0.125] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
987	chr20	52714705	52714706	rs6123359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	20q13.2		rs6123359-G	0.512919057	2E-9		0.086855024	[0.058-0.115] unit increase	Illumina [13429980] (imputed)	N
987	chr20	52714705	52714706	rs6123359	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	20q13.2		rs6123359-G	NR	2E-8		1.1093048	[1.0701655511215-1.14987553551853]	Illumina [8919992] (imputed)	N
987	chr20	52714705	52714706	rs6123359	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.2		rs6123359-?	NR	7E-26		0.0358006	[0.029-0.042] unit increase	NR [6912294] (imputed)	N
987	chr20	52714705	52714706	rs6123359	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	20q13.2		rs6123359-A	0.897775	7E-26		0.034	[0.028-0.04] unit increase	NR [7250403] (imputed)	N
987	chr20	52714705	52714706	rs6123359	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	20q13.2	NR	rs6123359-G	0.105192	8E-24		0.032345	[0.026-0.039] unit increase	Affymetrix [16668957] (imputed)	N
987	chr20	52714705	52714706	rs6123359	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	20q13.2	BCAS1	rs6123359-G	0.515	6E-8		1.08	[NR]	Illumina [6603247] (imputed)	N
987	chr20	52714705	52714706	rs6123359	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	20q13.2	BCAS1, CYP24A1	rs6123359-?	NR	1E-9		0.03256	[0.022-0.043] unit increase novel	Illumina [6108953] (imputed)	N
987	chr20	52717066	52717067	rs6097767	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	20q13.2	CYP24A1	rs6097767-A	NR	2E-6	(men)	0.3737551	[0.22-0.53] unit decrease	Illumina [5527232] (imputed)	N
987	chr20	52718554	52718555	rs8123293	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	20q13.2		rs8123293-G	0.113	3E-8		0.076	[0.049-0.103] unit decrease	Affymetrix [812428]	N
987	chr20	52718554	52718555	rs8123293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	20q13.2	NR	rs8123293-G	NR	4E-13		0.0275	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52718554	52718555	rs8123293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs8123293-G	NR	9E-10		0.0226	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52718554	52718555	rs8123293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs8123293-G	NR	1E-9		0.0226	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52718554	52718555	rs8123293	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs8123293-G	NR	3E-10		0.0244	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	1E-9		0.0157	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	1E-13		0.0197	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	5E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	2E-19		0.0228	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	2E-10		0.0161	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52721955	52721956	rs158528	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs158528-G	NR	4E-40		0.0351	[0.03-0.04] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52724215	52724216	rs6013892	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.2		rs6013892-?	NR	2E-14		0.030816	[0.023-0.039] unit increase	NR [6912294] (imputed)	N
987	chr20	52727952	52727953	rs2870308	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fibroblast growth factor 23 levels	21,758 European ancestry individuals	9,173 individuals	20q13.2		rs2870308-A	0.27	2E-20		0.0919	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
987	chr20	52731401	52731402	rs6127099	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	20q13.2		rs6127099-A	0.721058	6E-9		0.0234902	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
987	chr20	52731401	52731402	rs6127099	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	20q13.2	NR	rs6127099-T	0.279034	9E-62		0.036797	[0.032-0.041] unit decrease	Affymetrix [16668957] (imputed)	N
987	chr20	52731401	52731402	rs6127099	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q13.2	NR	rs6127099-A	0.721214	1E-8		0.0177481	[0.011-0.024] unit increase	Affymetrix [16580851] (imputed)	N
987	chr20	52731401	52731402	rs6127099	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	20q13.2	CYP24A1	rs6127099-A	0.712	1E-14		0.477	[0.36-0.6] unit decrease	Affymetrix [NR] (imputed)	N
987	chr20	52731401	52731402	rs6127099	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20q13.2	CYP24A1	rs6127099-A	0.721	1E-36	(EA)	0.0051	[0.0043-0.0059] unit decrease	Affymetrix [NR] (imputed)	N
987	chr20	52731401	52731402	rs6127099	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.2	CYP24A1	rs6127099-A	0.721	4E-50		0.0051	[0.0043-0.0059] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
987	chr20	52731401	52731402	rs6127099	28757204	Manousaki D	2017-07-21	Am J Hum Genet	Low-Frequency Synonymous Coding Variation in CYP2R1 Has Large Effects on Vitamin D Levels and Risk of Multiple Sclerosis.	Vitamin D levels	2,619 whole genome sequenced European ancestry individuals, up to 38,213 European ancestry individuals, 1,442 individuals	NA	20q13.2	intergenic	rs6127099-T	0.288	2E-17		0.06	[0.04-0.08] nmol/L decrease	Affymetrix, Illumina [11026511] (imputed)	N
987	chr20	52731401	52731402	rs6127099	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		20q13.2	BCAS1	rs6127099-A	NR	3E-17		0.0095	[0.0073-0.0117] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
987	chr20	52731401	52731402	rs6127099	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	20q13.2	CYP24A1	rs6127099-T	0.34	2E-72		0.07	[0.064-0.076] unit increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
987	chr20	52732361	52732362	rs17216707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	20q13.2		rs17216707-C	0.084128	4E-8		0.048717	[0.031-0.066] unit decrease	Illumina [13468899] (imputed)	N
987	chr20	52732361	52732362	rs17216707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	20q13.2		rs17216707-C	NR	4E-82		0.0581	[0.052-0.064] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
987	chr20	52732361	52732362	rs17216707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	20q13.2		rs17216707-C	NR	7E-24		0.0272	[0.022-0.032] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
987	chr20	52732361	52732362	rs17216707	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q13.2	BCAS1, CYP24A1	rs17216707-C	0.19	7E-9		5.79	z-score increase	Affymetrix [4311822] (imputed)	N
987	chr20	52732361	52732362	rs17216707	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	20q13.2		rs17216707-T	0.817316	6E-48		0.038	[0.032-0.044] unit decrease	NR [7250403] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	20q13.2	intergenic	rs17216707-T	0.8	1E-8		10.93	NR mg increase	NR [NR] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	20q13.2	CYP24A1	rs17216707-T	0.81	8E-18		1.19	[1.14-1.23]	Affymetrix, Illumina [~ 5000000] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	20q13.2	CYP24A1	rs17216707-T	0.81	1E-11		1.17	[1.12-1.22]	Affymetrix [~ 8400000] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.2	CYP24A1	rs17216707-T	0.8134	2E-46		0.0051	[0.0043-0.0059] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	20q13.2	CYP24A1	rs17216707-T	0.8134	6E-8		0.0057	[0.0037-0.0077] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
987	chr20	52732361	52732362	rs17216707	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	20q13.2	CYP24A1	rs17216707-C	0.1366	1E-17		8.527	NR z score increase	Illumina [26237160] (imputed)	N
987	chr20	52732361	52732362	rs17216707	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	20q13.2	BCAS1	rs17216707-T	0.839	5E-16		0.527	[0.3-0.75] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
987	chr20	52732361	52732362	rs17216707	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	20q13.2	BCAS1, CYP24A1	rs17216707-T	0.7997	3E-24	(EA)	0.0542	[0.044-0.064] unit increase	Affymetrix, Illumina [NR] (imputed)	N
987	chr20	52732361	52732362	rs17216707	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels (dietary vitamin D intake interaction)	39,868 European ancestry individuals	2,113 European ancestry individuals	20q13.2	CYP24A1	rs17216707-T	NR	1E-14				Affymetrix, Illumina [at least 1200000] (imputed)	N
987	chr20	52732361	52732362	rs17216707	29343764	Jiang X	2018-01-17	Nat Commun	Genome-wide association study in 79,366 European-ancestry individuals informs the genetic architecture of 25-hydroxyvitamin D levels.	Vitamin D levels	79,366 European ancestry individuals	42,757 European and unknown ancestry individuals	20q13.2	CYP24A1	rs17216707-T	NR	8E-23		0.026	[0.021-0.031] unit increase	Affymetrix, Illumina [up to 3600000] (imputed)	N
987	chr20	52732361	52732362	rs17216707	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	20q13.2	BCAS1	rs17216707-T	NR	6E-7		0.761	[0.47-1.05] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
987	chr20	52732361	52732362	rs17216707	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	20q13.2	BCAS1	rs17216707-T	0.79	9E-15	(EA)	0.0077	[0.0057-0.0097] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
987	chr20	52735238	52735238	rs35870583	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20q13.2	NR	rs35870583-GT	0.1873	3E-82		0.005671	[0.0051-0.0063] unit decrease	Affymetrix [NR] (imputed)	N
987	chr20	52735238	52735238	rs35870583	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20q13.2	CYP24A1	rs35870583-G	0.813	3E-25		0.0051	[0.0043-0.0059] unit decrease	Affymetrix [NR] (imputed)	N
987	chr20	52737122	52737123	rs2585442	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.2		rs2585442-?	NR	4E-56		0.0381893	[0.033-0.043] unit increase	NR [6912294] (imputed)	N
987	chr20	52737122	52737123	rs2585442	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	20q13.2		rs2585442-C	0.759346	9E-52		0.035	[0.031-0.039] unit increase	NR [7250403] (imputed)	N
987	chr20	52737122	52737123	rs2585442	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	20q13.2	NR	rs2585442-G	0.246306	7E-49		0.033609	[0.029-0.038] unit increase	Affymetrix [16668957] (imputed)	N
987	chr20	52737227	52737227	rs11481757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.2		rs11481757-AT	NR	7E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
987	chr20	52742046	52742047	rs35194449	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Urolithiasis	6,638 Japanese ancestry cases, 205,815 Japanese ancestry controls	NA	20q13.2		rs35194449-T	0.09356391	1E-8		0.83546036	[0.785114744-0.889034358]	Illumina [8919992] (imputed)	N
987	chr20	52742046	52742047	rs35194449	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	20q13.2	CYP24A1	rs35194449-T	0.24	2E-10		4.0	NR percent increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
987	chr20	52742305	52742306	rs8121940	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.2		rs8121940-?	NR	2E-65		0.0435613	[0.039-0.049] unit decrease	NR [6912294] (imputed)	N
987	chr20	52742305	52742306	rs8121940	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	177,082 European ancestry individuals	NA	20q13.2		rs8121940-G	0.2	4E-21		0.0392	[0.031-0.047] unit increase	NR [8806780] (imputed)	N
987	chr20	52742305	52742306	rs8121940	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	162,591 European ancestry individuals	NA	20q13.2		rs8121940-G	0.2	1E-16		0.0354	[0.027-0.044] unit increase	NR [8806780] (imputed)	N
987	chr20	52742305	52742306	rs8121940	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D level variance	318,851 European ancestry individuals	NA	20q13.2		rs8121940-G	0.2	9E-9		0.0181	[0.012-0.024] unit decrease	NR [6098063] (imputed)	N
987	chr20	52742589	52742590	rs17217119	34308111	Amin HA	2021-01-07	BMJ Nutr Prev Health	No evidence that vitamin D is able to prevent or affect the severity of COVID-19 in individuals with European ancestry: a Mendelian randomisation study of open data.	Vitamin D insufficiency	35,079 European ancestry cases, 140,898 European ancestry controls	NA	20q13.2		rs17217119-G	0.193	5E-16		0.086	[0.064-0.108] unit increase	Affymetrix [812428]	N
987	chr20	52744436	52744437	rs2585447	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.2	BCAS1	rs2585447-C	NR	3E-10		1.0879025	NR	Affymetrix, Illumina [8278136] (imputed)	N
987	chr20	52745722	52745723	rs117989384	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in diabetes (ESRD vs. no ESRD)	1,184 European ancestry cases with end-stage renal disease, 8,466 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	20q13.2	NR	rs117989384-?		6E-6	(EA)	2.26	[1.15-4.42]	Affymetrix, Illumina [up to 9343778] (imputed)	N
987	chr20	52763183	52763184	rs34670199	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs34670199-C	NR	2E-10		0.0251	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52771260	52771261	rs2762934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	20q13.2	NR	rs2762934-A	NR	1E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52771260	52771261	rs2762934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q13.2	NR	rs2762934-A	NR	9E-11		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52771260	52771261	rs2762934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs2762934-A	NR	4E-19		0.0289	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52774426	52774427	rs1570669	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20q13.2	NR	rs1570669-A	NR	9E-12		0.018	[0.012-0.024] mg/dl decrease	Affymetrix [NR] (imputed)	N
987	chr20	52774426	52774427	rs1570669	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	20q13.2	CYP24A1	rs1570669-A	0.66	9E-12		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
987	chr20	52781090	52781091	rs6068816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	20q13.2	NR	rs6068816-T	NR	6E-14		0.0299	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52781090	52781091	rs6068816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs6068816-T	NR	2E-11		0.026	[0.018-0.034] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52781090	52781091	rs6068816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs6068816-T	NR	3E-11		0.0258	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52781090	52781091	rs6068816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs6068816-T	NR	3E-12		0.0283	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52782690	52782691	rs3787555	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (smell)	367 Japanese ancestry female cases, 5,367 Japanese ancestry female controls	392 Japanese ancestry female cases, 5,222 Japanese ancestry female controls	20q13.2	NR	rs3787555-A	0.668470474	3E-6		0.26020566	[0.15-0.37] unit decrease	Affymetrix [536506]	N
987	chr20	52784611	52784612	rs2585431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs2585431-C	NR	6E-10		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52784611	52784612	rs2585431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs2585431-C	NR	2E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52784611	52784612	rs2585431	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs2585431-C	NR	2E-14		0.0207	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52786265	52786266	rs188695430	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.2	CYP24A1	rs188695430-T	0.999	3E-6	(AA)	1.705	NR unit increase	Illumina [NR] (imputed)	N
987	chr20	52788313	52788314	rs2259735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	20q13.2		rs2259735-C	0.743568633	4E-8		0.158531	[0.1-0.22] unit decrease	Illumina [13428180] (imputed)	N
987	chr20	52788313	52788314	rs2259735	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	20q13.2		rs2259735-?	NR	3E-8		0.84	[0.79-0.89]	Illumina [9900441] (imputed)	N
987	chr20	52788924	52788925	rs2762942	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	20q13.2	NR	rs2762942-A	0.942083	8E-35		0.053192	[0.045-0.062] unit increase	Affymetrix [16668957] (imputed)	N
987	chr20	52789742	52789743	rs2248137	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.2	CYP24A1	rs2248137-C	NR	2E-19		1.0919415	NR	Affymetrix, Illumina [8278136] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	4E-23		0.0459	[0.037-0.055] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	2E-9		0.027	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	9E-17		0.0376	[0.029-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	6E-13		0.0326	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	4E-17		0.0382	[0.029-0.047] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	20q13.2	NR	rs2762943-G	NR	1E-31		0.0554	[0.046-0.065] unit increase	Affymetrix [9000000] (imputed)	N
987	chr20	52790785	52790786	rs2762943	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.2		rs2762943-?	NR	2E-34		0.0482547	[0.041-0.056] unit decrease	NR [6912294] (imputed)	N
987	chr20	52790785	52790786	rs2762943	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	20q13.2		rs2762943-T	0.076929	4E-36		0.046	[0.038-0.054] unit decrease	NR [7250403] (imputed)	N
987	chr20	52790785	52790786	rs2762943	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Creatinine levels	69,591 European ancestry individuals	NA	20q13.2	CYP24A1, PFDN4	rs2762943-G	0.914992	1E-8		0.065065	[0.045-0.085] unit increase	Illumina [24961484] (imputed)	N
987	chr20	52791517	52791518	rs2248359	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	20q13.2	CYP24A1	rs2248359-G	0.62	2E-13		1.09		Illumina [161311]	N
987	chr20	52791517	52791518	rs2248359	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.2	CYP24A1	rs2248359-G	NR	3E-11		1.12	[1.1-1.13]	Illumina [465434]	N
987	chr20	52795538	52795539	rs73285914	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	20q13.2		rs73285914-G	0.0975	3E-9		0.89		Affymetrix, Illumina [9397031] (imputed)	N
987	chr20	52795538	52795539	rs73285914	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	20q13.2		rs73285914-?	NR	1E-10				NR [~ 8900000] (imputed)	N
987	chr20	52797580	52797581	rs2426500	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	20q13.2		rs2426500-?	NR	8E-13		0.91	[0.89-0.94]	Illumina [5170515] (imputed)	N
987	chr20	52807220	52807221	rs16999165	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	20q13.2	CYP24A1, PFDN4	rs16999165-T	0.692	2E-8		1.19	[1.12-1.26]	Illumina [606164]	N
987	chr20	52807261	52807262	rs62214554	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	20q13.2	CYP24A1, PFDN4	rs62214554-G	0.25	3E-7				Affymetrix [432921]	N
987	chr20	52810376	52810377	rs6013915	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	20q13.2	PFDN4	rs6013915-A	0.03	2E-9		0.03705	[0.023-0.051] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
987	chr20	52816716	52816717	rs964293	26766742	Garcia-Albeniz X	2016-01-14	Br J Cancer	CYP24A1 variant modifies the association between use of oestrogen plus progestogen therapy and colorectal cancer risk.	Colorectal cancer (oestrogen-progestogen hormone therapy interaction)	554 European ancestry postmenopausal cases, 729 European ancestry postmenopausal controls	NA	20q13.2	CYP24A1	rs964293-?	NR	5E-9	(Empirical Bayes)	1.6393442	[1.39-1.92]	Affymetrix, Illumina [~ 2700000] (imputed)	N
988	chr20	52825472	52825473	rs6023037	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-345 sp000433315 abundance in stool	5,959 Finnish ancestry individuals	NA	20q13.2		rs6023037-G	0.0105847	5E-8		0.469277	[0.3-0.64] unit increase	Illumina [7980478] (imputed)	N
988	chr20	52843798	52843799	rs2585417	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.2	PFDN4	rs2585417-A	0.337	5E-6	(Vigorous activity )	0.03	[NR] min/d increase	Illumina [899892]	N
988	chr20	52844349	52844350	rs12625916	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	20q13.2	PFDN4, DOK5	rs12625916-?		7E-6	(African American)	0.29461488	[0.17-0.42] unit decrease	Illumina [13620258] (imputed)	N
988	chr20	52951046	52951047	rs1293153	30092369	Mainali B	2018-08-06	Papillomavirus Res	Variants in Immune-related Genes and Genital HPV 16 Persistence in Men.	Infection persistence (>18 months) in genital human papillomavirus 16 infection	21 European ancestry male cases, 15 Brazilian ancestry male cases,  4 African-American male cases, 62 European ancestry male controls, 69 Brazilian ancestry male controls, 20 African-American male controls	NA	20q13.2	intergenic	rs1293153-G	NR	6E-6		1.617	[NR] unit increase	Affymetrix [605885]	N
990	chr20	53203425	53203426	rs6023383	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs6023383-?	NR	3E-37				Affymetrix [NR]	N
991	chr20	53267110	53267111	rs2023454	20215924	Liu X	2010-01-01	J Am Acad Child Adolesc Psychiatry	A genome-wide association study of amygdala activation in youths with and without bipolar disorder.	Functional MRI	36 European ancestry BD cases, 21 European ancestry controls, 1 African American BD case, 5 African American controls, 2 BD cases, 3 controls	NA		DOK5	rs2023454-?	NR	5E-7	(hostility, right amygdala)	22.0	[NR] % variance	Illumina [104043]	N
992	chr20	53360092	53360093	rs6023560	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs6023560-?	NR	1E-10				Affymetrix [NR]	N
992	chr20	53411018	53411019	rs13037755	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill	2,666 European ancestry individuals	NA	20q13.2	intergenic	rs13037755-?	0.71	5E-6		0.26	[0.15-0.37] unit increase	Illumina [NR]	N
992	chr20	53414538	53414539	rs157640	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	20q13.2	DOK5	rs157640-G		5E-6				Illumina [944512] (imputed)	N
992	chr20	53453325	53453326	rs1512065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs1512065-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
992	chr20	53453849	53453850	rs6023633	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.2	NA	rs6023633-A	0.7767	2E-10		0.013	[0.0089-0.0171] unit decrease	NR [~ 27400000] (imputed)	N
992	chr20	53462974	53462975	rs1512060	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20q13.2	intergenic	rs1512060-T	0.0499	6E-6		0.2092	[0.12-0.3] unit decrease	Illumina [2500000] (imputed)	N
992	chr20	53470582	53470583	rs6023649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.2		rs6023649-?	NR	3E-11				NR [~ 8900000] (imputed)	N
993	chr20	53505899	53505900	rs181827214	30583798	Bovijn J	2018-12-21	Am J Hum Genet	GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology.	Erectile dysfunction	6,175 European ancestry male cases, 217,630 European ancestry male controls	NA	20q13.2	DOK5	rs181827214-?	NR	6E-6				Affymetrix, Illumina [at least 807411] (imputed)	N
993	chr20	53534072	53534073	rs283274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.2	Intergenic	rs283274-A	0.3275	2E-9	(MTAG)	0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
993	chr20	53534072	53534073	rs283274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.2	Intergenic	rs283274-A	0.3332	3E-9	(MTAG)	0.0083	[0.0056-0.011] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
995	chr20	53801128	53801129	rs6092078	20195266	Adkins DE	2010-03-02	Mol Psychiatry	Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs.	Response to antipsychotic treatment	421 European ancestry, 214 African American, and 103 cases	NA	20q13.2	intergenic	rs6092078-?	0.115	3E-6	(risperidone-hip circumference)			Affymetrix [492900]	N
996	chr20	53910503	53910504	rs211917	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs211917-?	NR	7E-19				Affymetrix [NR]	N
996	chr20	53990794	53990794	rs112162556	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs112162556-AT	0.01568	1E-8	(WARS)	0.0541	NR unit increase	Illumina [1671387] (imputed)	N
997	chr20	54126508	54126509	rs11696973	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine without aura	7,107 European ancestry cases, 69,427 European ancestry controls	NA	20q13.2	intergenic	rs11696973-?	0.86	8E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
998	chr20	54139485	54139486	rs6069325	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	20q13.2	CBLN4	rs6069325-T	0.841	7E-21		0.069	[0.054-0.083] unit increase	Illumina [7428049] (imputed)	N
998	chr20	54145085	54145086	rs2247627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.2		rs2247627-A	NR	6E-13		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
998	chr20	54145085	54145086	rs2247627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	20q13.2		rs2247627-A	0.451317	3E-8		0.0177572	[0.011-0.024] unit increase	Illumina [13479178] (imputed)	N
998	chr20	54145085	54145086	rs2247627	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20q13.2	LINC01441, CBLN4	rs2247627-A	0.45	3E-8	(Japanese)	0.019	[0.013-0.025] unit increase	Illumina [6108953] (imputed)	N
998	chr20	54147461	54147462	rs2243930	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	20q13.2	NR	rs2243930-G	NR	6E-8		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
998	chr20	54147461	54147462	rs2243930	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20q13.2	LINC01441, CBLN4	rs2243930-A	0.2	1E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
998	chr20	54148762	54148763	rs2749806	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs2749806-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
998	chr20	54149013	54149014	rs2749808	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	20q13.2	NR	rs2749808-T	NR	5E-6	(EA)	0.0963	[0.055-0.138] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
998	chr20	54157496	54157497	rs559267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.2	NA	rs559267-A	0.6696	3E-9		0.0103	[0.007-0.0136] unit decrease	NR [~ 27400000] (imputed)	N
998	chr20	54157545	54157546	rs559390	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.2	CBLN4	rs559390-A	0.658242	8E-9		0.00837454	[0.0055-0.0112] unit decrease	Affymetrix [12370749]	N
998	chr20	54157545	54157546	rs559390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.2		rs559390-?	NR	4E-10				NR [~ 8900000] (imputed)	N
998	chr20	54191218	54191219	rs73625555	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20q13.2	NR	rs73625555-?	NR	2E-6	(EA)	1.0117	[0.6-1.43] unit decrease	Illumina [up to 11892802] (imputed)	N
998	chr20	54199748	54199749	rs188674761	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20q13.2	NR	rs188674761-?	NR	2E-7	(Latino)	1.1179	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
998	chr20	54217047	54217048	rs41355452	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	20q13.2	intergenic	rs41355452-A	0.13	4E-8	(AA, women)	0.1468	[0.094-0.199] unit decrease	Affymetrix [up to 12500000] (imputed)	N
999	chr20	54280089	54280090	rs8119592	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBLN4	5,363 Icelandic ancestry individuals	NA	20q13.2		rs8119592-G	0.3449	3E-23		0.194798	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
999	chr20	54300745	54300746	rs6069391	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.2	NR	rs6069391-?	NR	2E-21				Affymetrix [NR]	N
999	chr20	54304641	54304642	rs114633937	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs114633937-C	0.01568	2E-9	(ORM1)	0.7983	NR unit increase	Illumina [1671387] (imputed)	N
999	chr20	54304641	54304642	rs114633937	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs114633937-C	0.01568	1E-8	(SERPINA3)	0.2051	NR unit increase	Illumina [1671387] (imputed)	N
999	chr20	54372071	54372072	rs6098802	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBLN4	5,363 Icelandic ancestry individuals	NA	20q13.2		rs6098802-G	0.3049	1E-15		0.16309	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
999	chr20	54374822	54374823	rs6098805	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs6098805-T	0.02091	4E-9	(CPT2)	0.1867	NR unit increase	Illumina [1671387] (imputed)	N
999	chr20	54379032	54379033	rs6092179	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.2	NA	rs6092179-A	0.197	2E-9		0.0126	[0.0085-0.0167] unit decrease	NR [~ 27400000] (imputed)	N
999	chr20	54379666	54379667	rs11908421	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index x sex x age interaction (4df test)	up to 51,625 European ancestry men aged <50, up to 60,654 European ancestry women aged <50, up to 90,988 European ancestry men aged >50, up to 106,622 European ancestry women aged >50	NA	20q13.2	CBLN4, MC3R	rs11908421-T	0.81	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr20	54379666	54379667	rs11908421	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index (age <50)	up to 51,625 European ancestry men, up to 60,654 European ancestry women	NA	20q13.2	CBLN4, MC3R	rs11908421-T	0.81	9E-8		0.033	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr20	54379666	54379667	rs11908421	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	20q13.2	CBLN4, MC3R	rs11908421-T	0.81	7E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
999	chr20	54387342	54387343	rs2207894	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20q13.2	CBLN4	rs2207894-C	0.808677	8E-16		0.0143543	[0.011-0.018] unit increase	Affymetrix [12370749]	N
1000	chr20	54394987	54394988	rs13037595	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.2	MC3R	rs13037595-?	NR	2E-6	(CE 22:6)	0.24766439	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1000	chr20	54395167	54395168	rs6024459	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	20q13.2	NA	rs6024459-T	0.8075	8E-9		0.0127	[0.0084-0.017] unit increase	NR [~ 27400000] (imputed)	N
1000	chr20	54396790	54396791	rs10211770	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	20q13.2	LINC01441, CBLN4	rs10211770-T		5E-9		1.022	[NR]	Affymetrix [up to 79000000] (imputed)	N
1000	chr20	54423295	54423296	rs6092194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.2	NR	rs6092194-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1000	chr20	54447946	54447947	rs74447607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.2		rs74447607-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1000	chr20	54447946	54447947	rs74447607	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.2	CBLN4	rs74447607-T	0.192	3E-12	(Cerebellin-4, CBLN4.5688.65.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1000	chr20	54462392	54462393	rs910912	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.2	NR	rs910912-C	0.739	9E-12		0.00837812	[0.006-0.0108] unit decrease	NR [9732723] (imputed)	N
1000	chr20	54462392	54462393	rs910912	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q13.2	NR	rs910912-C	0.739	8E-9		0.016769927	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1000	chr20	54472595	54472596	rs11907265	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	20q13.2	CBLN4	rs11907265-C	0.01186	1E-6	(EA)			Illumina [4404269] (imputed)	N
1000	chr20	54480025	54480026	rs7265959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.2		rs7265959-T	NR	2E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1000	chr20	54516337	54516338	rs11086525	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	20q13.2	intergenic	rs11086525-C	NR	3E-6		0.2013	[0.12-0.29] unit increase	Illumina [9290362] (imputed)	N
1000	chr20	54523514	54523515	rs79398912	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	20q13.2		rs79398912-G	NR	2E-6		1.1423349	[1.09-1.20]	Illumina [11600722] (imputed)	N
1001	chr20	54542871	54542872	rs11699438	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.2	CBLN4	rs11699438-T	0.0904430938694201	5E-7	(G_Escherichia_Shigella_HB)	0.474629	[0.29-0.66] unit decrease	Illumina [7711310] (imputed)	N
1001	chr20	54543205	54543206	rs4811647	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	20q13.2		rs4811647-T	0.05	1E-6		1.05	unit increase	Affymetrix [NR] (imputed)	N
1001	chr20	54620963	54620964	rs76939542	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.2	NR	rs76939542-T	0.01045	3E-8	(HMOX1)	0.03802	NR unit increase	Illumina [1671387] (imputed)	N
1002	chr20	54747468	54747469	rs6069625	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.2	MC3R	rs6069625-A	0.726597	2E-8		0.00872998	[0.0057-0.0118] unit increase	Affymetrix [12370749]	N
1002	chr20	54762417	54762418	rs6123551	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (residualized delayed recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	20q13.2	NR	rs6123551-G	NR	4E-6			unit increase	Illumina [at least 1198956] (imputed)	N
1003	chr20	54823804	54823805	rs3746619	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q13.2		rs3746619-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1003	chr20	54833430	54833431	rs6014657	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	20q13.2		rs6014657-C	NR	7E-7		0.00691104	[0.0042-0.0096] years increase	NR [7400000] (imputed)	N
1003	chr20	54833430	54833431	rs6014657	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	20q13.2		rs6014657-C	NR	1E-14		0.02973225	[0.022-0.037] years increase	NR [7400000] (imputed)	N
1003	chr20	54837897	54837898	rs12106274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.2		rs12106274-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1003	chr20	54845718	54845719	rs6069681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.2		rs6069681-A	NR	2E-12		0.0101	[0.0074-0.0128] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1003	chr20	54850685	54850686	rs34340379	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.2	NR	rs34340379-G	NR	1E-12		0.0204	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1003	chr20	54859033	54859034	rs2182356	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.2	intergenic	rs2182356-T	0.7327	6E-21		0.0201	[0.016-0.024] unit decrease	Affymetrix [18391927] (imputed)	N
1003	chr20	54888166	54888167	rs6014682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.2	AURKA	rs6014682-?	NR	3E-6	(argininosuccinate)	0.28241277	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1004	chr20	54944067	54944068	rs6024836	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.2		rs6024836-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1004	chr20	54963738	54963739	rs6024846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.2	AURKA	rs6024846-G	0.271459	5E-10		0.015659826	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chr20	54963738	54963739	rs6024846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs6024846-G	0.359244	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.2		rs2180691-A	NR	1E-9		0.0134	[0.0091-0.0177] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.2	AURKA	rs2180691-A	0.266597	9E-13		0.0174254	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.2	AURKA	rs2180691-A	0.266585	2E-11		0.016695064	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.2	NR	rs2180691-A	0.34995	1E-11				Affymetrix, Illumina [24246363] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.2	NR	rs2180691-A	0.268439	2E-13		0.01514	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.2	NR	rs2180691-A	0.267096	4E-10		0.013745	[0.0095-0.018] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1004	chr20	54964360	54964361	rs2180691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.2		rs2180691-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1004	chr20	54983074	54983075	rs6069736	29777097	Marioni RE	2018-05-18	Transl Psychiatry	GWAS on family history of Alzheimer's disease.	Alzheimer's disease or family history of Alzheimer's disease	up to 42,034 British ancestry individuals with parental history of Alzheimer's disease, at least 272,244 British ancestry individuals with no parental history of Alzheimer's disease, 25,580 Alzheimer's disease cases, 48,466 controls	NA	20q13.31	NR	rs6069736-?	NR	3E-8				Affymetrix [7795605] (imputed)	N
1004	chr20	54987048	54987051	rs72509155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.31		rs72509155-C	NR	6E-17		0.0319	[0.024-0.039] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1004	chr20	54987048	54987051	rs72509155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.31	CASS4	rs72509155-C	0.102402	3E-22		0.03606647	[0.029-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr20	54987048	54987051	rs72509155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.31	CASS4	rs72509155-C	0.102385	2E-17		0.031694718	[0.024-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1004	chr20	54988876	54988877	rs16979901	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q13.31		rs16979901-A	0.898	8E-9				Affymetrix [10369434] (imputed)	N
1004	chr20	54988876	54988877	rs16979901	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20q13.31	CASS4	rs16979901-G	0.1027	7E-13		0.04326765	[0.031-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr20	54988876	54988877	rs16979901	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20q13.31	CASS4	rs16979901-G	0.1026	2E-12		0.04211524	[0.03-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1004	chr20	54989325	54989326	rs11905250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.31	NR	rs11905250-G	0.102678	4E-24		0.030834	[0.025-0.037] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1004	chr20	54990123	54990124	rs55708816	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs55708816-A	0.110093	5E-23				Affymetrix, Illumina [24588908] (imputed)	N
1004	chr20	54995698	54995699	rs6069737	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	20q13.31		rs6069737-?	NR	7E-16				Illumina [NR] (imputed)	N
1004	chr20	54998543	54998544	rs6014724	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	20q13.31	CASS4	rs6014724-T	NR	6E-6		4.515	NR z-score decrease	Affymetrix [10847151] (imputed)	N
1004	chr20	54998543	54998544	rs6014724	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	20q13.31	CASS4	rs6014724-G	0.089	7E-10		6.18	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1004	chr20	54998543	54998544	rs6014724	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	20q13.31	CASS4	rs6014724-G	NR	9E-8		5.351533	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1004	chr20	55018259	55018260	rs7274581	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	20q13.31	CASS4	rs7274581-C	0.084	3E-8		5.53	NR z-unit decrease	Affymetrix, Illumina [up to 10847151] (imputed)	N
1004	chr20	55018259	55018260	rs7274581	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	20q13.31	CASS4	rs7274581-C	NR	2E-7		5.21	NR z-score decrease	Illumina [up to 9862738] (imputed)	N
1004	chr20	55018259	55018260	rs7274581	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	20q13.31	CASS4	rs7274581-T	0.917	3E-8		1.1364	[1.09-1.19]	Illumina [7055881] (imputed)	N
1004	chr20	55026740	55026741	rs1884910	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	20q13.31	NR	rs1884910-G	NR	3E-6		0.079	[0.046-0.112] SD units decrease	NR [10700000] (imputed)	N
1004	chr20	55033781	55033782	rs7272702	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.31	NR	rs7272702-T	0.01045	1E-9	(HSPE1)	2.911	NR unit increase	Illumina [1671387] (imputed)	N
1004	chr20	55036546	55036547	rs428445	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	20q13.31	CASS4, GCNT7	rs428445-T	0.713	2E-6	(Asian, 25 years or older)	1.314	[1.175-1.470]	Affymetrix, Illumina [NR] (imputed)	N
1005	chr20	55101316	55101317	rs28620942	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	20q13.31	FAM209A, RTFDC1, GCNT7	rs28620942-A	0.55	8E-6	(Left HG area)	10.25	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1005	chr20	55104224	55104225	rs6069770	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus reactivation after allogeneic hematopoietic cell transplantation (recipients)	up to 1,301 European ancestry recipients	up to 868 European ancestry recipients	20q13.31		rs6069770-?	NR	5E-7		0.46	[0.33-0.63]	Affymetrix, Illumina [29826485] (imputed)	N
1005	chr20	55109303	55109304	rs6024938	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.31	C20orf107	rs6024938-A	0.427	6E-6	(Urinary free norepinephrine )	0.04	[NR] nmol/d increase	Illumina [899892]	N
1006	chr20	55183779	55183780	rs1004370	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	20q13.31		rs1004370-T	0.81	1E-8		0.09	unit decrease	Illumina [2093892] (imputed)	N
1006	chr20	55183779	55183780	rs1004370	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	20q13.31		rs1004370-T	0.81	1E-7		0.08	unit decrease	Illumina [2398641] (imputed)	N
1006	chr20	55195463	55195464	rs6014781	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q13.31		rs6014781-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1006	chr20	55223065	55223066	rs1884920	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	20q13.31	TFAP2C	rs1884920-A	0.5027	8E-6		1.4064697	[1.21-1.64]	Illumina [7521072] (imputed)	N
1006	chr20	55255053	55255054	rs6127813	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	20q13.31	intergenic	rs6127813-T	0.2985	2E-6	(Ordinal II)	0.2843	[0.17-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1006	chr20	55255053	55255054	rs6127813	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	20q13.31	intergenic	rs6127813-T	0.2984	2E-6	(Case/control)	0.282	[0.16-0.4] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1006	chr20	55255053	55255054	rs6127813	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	20q13.31	intergenic	rs6127813-T	0.2983	3E-6	(Ordinal I)	0.2697	[0.16-0.38] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1006	chr20	55256020	55256021	rs58056086	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of stenosis	727 European ancestry men, 550 European ancestry women	NA	20q13.31	RN7SL170P, RNU6-1146P, PTMAP6, TFAP2C	rs58056086-T	0.0883254	5E-6	(women)	0.459906	[0.26-0.66] % decrease	Affymetrix [532676] (imputed)	N
1006	chr20	55256020	55256021	rs58056086	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean degree of stenosis	727 European ancestry men, 550 European ancestry women	NA	20q13.31	RN7SL170P, RNU6-1146P, PTMAP6, TFAP2C	rs58056086-T	0.0883254	2E-7	(women)	0.318979	[0.2-0.44] % decrease	Affymetrix [532676] (imputed)	N
1006	chr20	55256020	55256021	rs58056086	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Maximum stenosis	727 European ancestry men, 550 European ancestry women	NA	20q13.31	RN7SL170P, RNU6-1146P, PTMAP6, TFAP2C	rs58056086-T	0.0883254	3E-7	(women)	0.379747	[0.24-0.52] % decrease	Affymetrix [532676] (imputed)	N
1006	chr20	55279344	55279345	rs911452	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.31	C20orf107	rs911452-?	NR	4E-6	(adenosine diphosphate)	0.26132697	[0.15-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1006	chr20	55282845	55282846	rs79919349	31712720	Forstner AJ	2019-11-11	Mol Psychiatry	Genome-wide association study of panic disorder reveals genetic overlap with neuroticism and depression.	Panic disorder	2,147 European ancestry cases, 7,760 European ancestry controls	2,408 European ancestry cases, 228,470 European ancestry controls	20q13.31	intergenic	rs79919349-A	NR	2E-6		1.77	NR	Illumina [8757275] (imputed)	N
1006	chr20	55287398	55287399	rs4811741	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	20q13.31	TFAP2C	rs4811741-A	0.3877	9E-11		0.0047	[0.0033-0.0061] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1006	chr20	55287566	55287567	rs2426638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	20q13.31		rs2426638-A	NR	4E-15		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1006	chr20	55294473	55294474	rs6092354	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20q13.31	TFAP2C, BMP7	rs6092354-G	0.11	2E-7	(EA)	0.6324	[0.4-0.87] unit increase	Illumina [~ 9000000] (imputed)	N
1006	chr20	55310282	55310283	rs34871495	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	20q13.31	TFAP2C, BMP7	rs34871495-T	0.026	8E-8		0.09	[0.057-0.123] unit increase	Illumina [7358575] (imputed)	N
1007	chr20	55347827	55347828	rs6099273	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	20q13.31	NR	rs6099273-C	NR	3E-8		0.00668196	[0.0043-0.009] unit decrease	NR [11010159] (imputed)	N
1007	chr20	55347827	55347828	rs6099273	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	20q13.31	NR	rs6099273-C	NR	4E-8	(adjusted for BMI)	0.00652	[0.0042-0.0088] unit decrease	NR [11010159] (imputed)	N
1007	chr20	55347827	55347828	rs6099273	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	20q13.31	NR	rs6099273-T	0.2496	1E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1007	chr20	55351868	55351869	rs6025157	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs6025157-A	0.378099	1E-12		0.0229121	[0.017-0.029] unit increase	NR [19129689] (imputed)	N
1007	chr20	55375860	55375861	rs6099283	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q13.31	TFAP2C	rs6099283-?		3E-9				Affymetrix, Illumina [NR] (imputed)	N
1007	chr20	55388755	55388756	rs6127860	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs6127860-C	0.474771	1E-12		0.0225307	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
1007	chr20	55390632	55390633	rs6025176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q13.31		rs6025176-?	NR	2E-31				NR [~ 8900000] (imputed)	N
1007	chr20	55390632	55390633	rs6025176	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20q13.31	NR	rs6025176-C	NR	5E-8		0.0365914	NR unit increase	NR [NR] (imputed)	N
1007	chr20	55401738	55401739	rs17470924	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs17470924-A	0.13815	4E-12		0.0310067	[0.022-0.04] unit decrease	NR [19129689] (imputed)	N
1007	chr20	55404164	55404165	rs115893283	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	20q13.31	BMP7	rs115893283-?		4E-12	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1007	chr20	55404164	55404165	rs115893283	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	20q13.31	BMP7	rs115893283-T	0.0415	3E-8	(African)	9.048	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
1007	chr20	55404164	55404165	rs115893283	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	20q13.31	BMP7	rs115893283-?	NR	6E-7	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1007	chr20	55404164	55404165	rs115893283	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (1df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	20q13.31	BMP7	rs115893283-T	0.0415	7E-6	(African)	3.725	unit decrease	Affymetrix, Illumina [18800000] (imputed)	N
1007	chr20	55409092	55409093	rs6127868	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	20q13.31	TFAP2C	rs6127868-A	0.1491	6E-17		1.092	NR	Affymetrix [9154080] (imputed)	N
1007	chr20	55411806	55411807	rs4811760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q13.31		rs4811760-?	NR	7E-30				NR [~ 8900000] (imputed)	N
1007	chr20	55434682	55434683	rs985546	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs985546-C	0.21946	1E-53		0.0592709	[0.052-0.067] unit decrease	NR [19129689] (imputed)	N
1007	chr20	55434682	55434683	rs985546	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		20q13.31	NR	rs985546-T	NR	3E-11		0.0491772	NR unit increase	NR [NR] (imputed)	N
1007	chr20	55443069	55443070	rs11696891	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs11696891-A	0.39647	7E-25		0.0333877	[0.027-0.04] unit increase	NR [19129689] (imputed)	N
1008	chr20	55446527	55446528	rs73914051	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.31	NR	rs73914051-G	0.0122	3E-9	(EIF2B1)	0.02405	NR unit increase	Illumina [1671387] (imputed)	N
1008	chr20	55454658	55454659	rs6099314	24621683	Cho MH	2014-02-07	Lancet Respir Med	Risk loci for chronic obstructive pulmonary disease: a genome-wide association study and meta-analysis.	Chronic obstructive pulmonary disease (moderate to severe)	5,812 European ancestry cases, 3,955 European ancestry controls, 821 African American cases, 1,749 African American controls	2,651 cases and their relatives	20q13.31	TFAP2C	rs6099314-?	NR	4E-7	(AA)			Illumina [up to 701491] (imputed)	N
1008	chr20	55455708	55455709	rs6069919	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.31	Intergenic	rs6069919-T	0.908	2E-6	(AA)	0.028	unit increase	Illumina [NR] (imputed)	N
1008	chr20	55503258	55503259	rs6025261	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (delayed recall level)	7,486 European ancestry individuals aged 50 years or older	NA	20q13.31	NR	rs6025261-?		5E-6		0.082	unit increase	Illumina [at least 1198956] (imputed)	N
1008	chr20	55506456	55506457	rs6069930	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	20q13.31	BMP7	rs6069930-A	0.13	9E-6		0.1	[0.061-0.139] unit increase	Illumina, Perlegen [2156702] (imputed)	N
1008	chr20	55508540	55508541	rs62208758	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fusiform gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.31	NR	rs62208758-?		8E-6				Illumina [4322238] (imputed)	N
1008	chr20	55526086	55526087	rs62210866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.31	Intergenic	rs62210866-A	0.9637	1E-8	(MTAG)	0.0204	[0.013-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1008	chr20	55528414	55528415	rs72626592	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	20q13.31		rs72626592-T	0.03	1E-9		6.07	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr20	55528414	55528415	rs72626592	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q13.31	NR	rs72626592-T	0.0379	6E-12				NR [9056863] (imputed)	N
1008	chr20	55533145	55533146	rs77901523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	20q13.31		rs77901523-C	0.03	7E-6				NR [13131314] (imputed)	N
1008	chr20	55533145	55533146	rs77901523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.31		rs77901523-C	0.03	2E-17		8.51	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr20	55533145	55533146	rs77901523	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q13.31	NR	rs77901523-C	0.0356	9E-10				NR [9056863] (imputed)	N
1008	chr20	55560999	55561000	rs6025281	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	20q13.31	intergenic	rs6025281-T	0.566	2E-6		0.021	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1009	chr20	55607583	55607584	rs6014907	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.31	NR	rs6014907-?	NR	6E-6				Affymetrix [NR]	N
1009	chr20	55609254	55609255	rs1150428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	20q13.31		rs1150428-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1009	chr20	55609254	55609255	rs1150428	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs1150428-G	0.22023	6E-10		0.0231297	[0.016-0.03] unit increase	NR [19129689] (imputed)	N
1009	chr20	55638536	55638537	rs331615	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	20q13.31	BMP7	rs331615-T	0.37	9E-7	(eosinophil count)	0.06	[0.04-0.08] unit increase	Illumina [2178645] (imputed)	N
1009	chr20	55638749	55638750	rs6127921	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	20q13.31	BMP7	rs6127921-?	0.82	3E-6	(response)	1.64	[1.33-2.04]	Affymetrix [430198]	N
1009	chr20	55638749	55638750	rs6127921	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	20q13.31	BMP7	rs6127921-?	0.81	1E-6	(remission)	1.75	[1.39-2.17]	Affymetrix [430198]	N
1009	chr20	55657643	55657644	rs753341	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q13.31	NR	rs753341-?	NR	2E-8				Illumina [7760689] (imputed)	N
1009	chr20	55662562	55662563	rs77225098	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	20q13.31	NR	rs77225098-T	0.0550565	6E-10		0.0418257	[0.029-0.055] unit increase	NR [19129689] (imputed)	N
1009	chr20	55662872	55662873	rs117992102	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q13.31	NR	rs117992102-?	NR	1E-8				Illumina [7760689] (imputed)	N
1009	chr20	55672543	55672544	rs6092424	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	20q13.31	RP11-560A15.4	rs6092424-A	0.49	6E-7		2.659	[1.61-3.71] unit decrease	Illumina [NR] (imputed)	N
1009	chr20	55683995	55683996	rs11699237	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	20q13.31	intergenic	rs11699237-?	NR	3E-6	(Negative/disorganized symptoms)	0.1221	[NR] unit increase	Affymetrix [696491]	N
1009	chr20	55701690	55701691	rs75161997	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	20q13.31	intergenic	rs75161997-T	0.0600146	8E-6		0.731556	[0.42-1.05] unit decrease	Illumina [at least 520076] (imputed)	N
1010	chr20	55744430	55744431	rs117553902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20q13.31	BMP7	rs117553902-T	0.0024	4E-20		0.372492	[0.29-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
1010	chr20	55744430	55744431	rs117553902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q13.31	BMP7	rs117553902-T	0.0024	8E-22		0.3891169	[0.31-0.47] unit increase	Affymetrix [~ 2500000] (imputed)	N
1010	chr20	55744430	55744431	rs117553902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	20q13.31	BMP7	rs117553902-T	0.0024	7E-13		0.2905123	[0.21-0.37] unit increase	Affymetrix [~ 2500000] (imputed)	N
1010	chr20	55744430	55744431	rs117553902	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20q13.31	BMP7	rs117553902-T	0.0024	6E-14		0.3038909	[0.22-0.38] unit increase	Affymetrix [~ 2500000] (imputed)	N
1010	chr20	55791614	55791615	rs230203	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	20q13.31	BMP7	rs230203-?	NR	2E-19		0.034	[0.041-0.027] unit decrease	Illumina [12039491] (imputed)	N
1010	chr20	55792164	55792165	rs35130793	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	20q13.31	BMP7	rs35130793-?	NR	3E-9		0.025	[0.017-0.033] unit increase	Illumina [12039491] (imputed)	N
1010	chr20	55797056	55797057	rs6127972	32266521	Justice CM	2020-04-07	Hum Genet	A genome-wide association study implicates the BMP7 locus as a risk factor for nonsyndromic metopic craniosynostosis.	Midline nonsyndromic craniosynostosis	345 European ancestry trios	NA	20q13.31	NR	rs6127972-T	NR	1E-6				Illumina [306233]	N
1010	chr20	55797796	55797797	rs230218	32266521	Justice CM	2020-04-07	Hum Genet	A genome-wide association study implicates the BMP7 locus as a risk factor for nonsyndromic metopic craniosynostosis.	Metopic nonsyndromic craniosynostosis	215 European ancestry trios	194 European ancestry cases, 333 European ancestry controls	20q13.31	BMP7	rs230218-A	0.4	3E-9		1.78	NR	Illumina [649669]	N
1010	chr20	55798239	55798240	rs4811827	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 23)	3,566 European ancestry individuals	4,680 European ancestry individuals	20q13.31		rs4811827-C	0.434376795	3E-9				Illumina [7417619] (imputed)	N
1010	chr20	55804115	55804116	rs193044	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	20q13.31		rs193044-A	NR	3E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1010	chr20	55819172	55819173	rs6127978	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	20q13.31	BMP7	rs6127978-G	NR	5E-6	(Irritable dimension)	0.2907	[0.17-0.41] unit decrease	Illumina [1871025] (imputed)	N
1010	chr20	55821045	55821046	rs6064518	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	20q13.31		rs6064518-T	NR	7E-11		0.0172	[0.012-0.022] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1010	chr20	55821045	55821046	rs6064518	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	20q13.31		rs6064518-T	0.32	7E-40		0.013	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1010	chr20	55821045	55821046	rs6064518	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	20q13.31		rs6064518-T	0.33	5E-11		0.017	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1010	chr20	55824508	55824509	rs6123683	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	20q13.31	NR	rs6123683-G	0.3549	4E-6		0.148	[0.086-0.21] unit increase	Illumina [10677593] (imputed)	N
1010	chr20	55831202	55831203	rs6014965	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal/Left-sided colorectal cancer	30,588 European ancestry cases, 64,159 European ancestry controls	NA	20q13.31	BMP7	rs6014965-A	0.554	5E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [11947015] (imputed)	N
1010	chr20	55831202	55831203	rs6014965	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	20q13.31	BMP7	rs6014965-A	0.5536	9E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [11353757] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.31		rs6123685-A	NR	8E-9		0.0139	[0.0092-0.0186] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	20q13.31	NR	rs6123685-A	NR	2E-9		0.0172	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	20q13.31	NR	rs6123685-A	NR	1E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.31	BMP7	rs6123685-G	0.745257	3E-13		0.0159703	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.31	BMP7	rs6123685-G	0.745269	2E-12		0.0159338	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.31	NR	rs6123685-A	0.253934	4E-9		0.00516629	[0.0033-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1010	chr20	55836039	55836040	rs6123685	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.31	NR	rs6123685-A	0.253934	2E-6		0.00467867	[0.0026-0.0068] unit increase	Affymetrix [16582965] (imputed)	N
1011	chr20	55837262	55837263	rs144434404	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	20q13.31	BMP7	rs144434404-T	0.011	3E-9		6.78	[NR]	Illumina [up to 49000000] (imputed)	N
1011	chr20	55855792	55855793	rs78404372	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	20q13.31	NR	rs78404372-?	NR	7E-7	(AA)	0.8275	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1011	chr20	55918933	55918934	rs28368105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.31	SPO11	rs28368105-G	0.00578199999999995	3E-10		0.09509246	[0.065-0.125] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr20	55918933	55918934	rs28368105	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.31	SPO11	rs28368105-G	0.00578100000000004	1E-12		0.10747494	[0.078-0.137] unit increase	Affymetrix [93095623] (imputed)	N
1011	chr20	55923977	55923978	rs6025505	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q13.31	NR	rs6025505-G	0.379122	2E-8		0.0403454	[0.027-0.054] unit decrease	Affymetrix [17914406] (imputed)	N
1011	chr20	55966903	55966904	rs117963839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.31	RP4-800J21.3, RBM38	rs117963839-T	0.189638	1E-38		0.03870231	[0.033-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55968112	55968113	rs439749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs439749-A	0.707674	3E-12				Affymetrix, Illumina [24649327] (imputed)	N
1012	chr20	55968112	55968113	rs439749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	20q13.31	NR	rs439749-A	0.649704	3E-14		0.014914	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1012	chr20	55969368	55969399	rs66888736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.31	RBM38	rs66888736-A	0.600224	4E-9		0.013344937	[0.0089-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55969392	55969423	rs59678704	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20q13.31		rs59678704-A	NR	5E-8		0.0131	[0.0084-0.0178] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1012	chr20	55969491	55969492	rs328491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs328491-T	0.637002	4E-12				Affymetrix, Illumina [23114412] (imputed)	N
1012	chr20	55969491	55969492	rs328491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q13.31	NR	rs328491-T	0.598273	2E-11		0.013427	[0.0095-0.0173] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1012	chr20	55971011	55971012	rs8125560	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.31	RBM38	rs8125560-C	0.189751	3E-39		0.03750673	[0.032-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55971808	55971809	rs117621405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.31	RBM38	rs117621405-T	0.055436	1E-9		0.030662363	[0.021-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55973343	55973344	rs35817974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.31	RBM38	rs35817974-A	0.189565	2E-55		0.04880457	[0.043-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55973343	55973344	rs35817974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.31	RBM38	rs35817974-A	0.189576	6E-50		0.04627843	[0.04-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55973343	55973344	rs35817974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20q13.31	RBM38	rs35817974-A	0.1904	1E-18		0.04032122	[0.031-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55973343	55973344	rs35817974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q13.31	RBM38	rs35817974-A	0.1904	9E-13		0.03262435	[0.024-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55977758	55977759	rs11905479	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	20q13.31	RBM38	rs11905479-A	0.2292	1E-20		0.03967122	[0.031-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55983694	55983695	rs11546711	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.31	RBM38	rs11546711-C	0.222908	7E-28		0.033711538	[0.028-0.04] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55985098	55985099	rs6014992	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.31	RBM38	rs6014992-C	0.065945	2E-9		0.027750023	[0.019-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55986800	55986801	rs6099612	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.31	RBM38	rs6099612-G	0.072	2E-11		0.04753712	[0.034-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55987163	55987164	rs12625774	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	20q13.31	NR	rs12625774-T	NR	9E-7		4550.0	unit increase	Affymetrix, Perlegen [1785543] (imputed)	N
1012	chr20	55988357	55988358	rs2865376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.31	RBM38	rs2865376-T	0.289895	9E-28		0.033341803	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.31	NR	rs376911010-T	0.00256999999999996	3E-56		0.3779943	[0.33-0.42] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.31	NR	rs376911010-T	0.00257099999999999	2E-59		0.3893249	[0.34-0.44] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q13.31		rs376911010-T	0.00255099999999997	4E-24		0.2428788	[0.2-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.31		rs376911010-T	0.00255799999999995	7E-13		0.1729723	[0.13-0.22] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.31		rs376911010-T	0.00256900000000004	7E-33		0.288029	[0.24-0.34] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.31		rs376911010-T	0.00256599999999996	3E-53		0.36536828	[0.32-0.41] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990369	55990370	rs376911010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.31		rs376911010-T	0.00256699999999999	2E-54		0.36944172	[0.32-0.42] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.31		rs737092-C	NR	6E-32		0.0202	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.31		rs737092-C	NR	3E-236		0.0653	[0.061-0.069] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	20q13.31		rs737092-C	0.489254	3E-53		0.0560594	[0.049-0.063] unit increase	Illumina [13476266] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.31		rs737092-C	NR	6E-166		0.0547	[0.051-0.059] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	20q13.31		rs737092-C	0.489525	5E-36		0.0461774	[0.039-0.053] unit increase	Illumina [13476299] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q13.31		rs737092-C	NR	1E-33		0.0245	[0.021-0.028] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.31		rs737092-C	NR	4E-13		0.0121	[0.0088-0.0154] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1012	chr20	55990404	55990405	rs737092	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	20q13.31	RBM38	rs737092-T	0.51	8E-9		0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.31		rs737092-C	0.487088	2E-9		0.013381358	[0.009-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs737092-C	0.49703	8E-67				Affymetrix, Illumina [24332387] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	20q13.31	NR	rs737092-T	0.495529	1E-49		0.0623	[0.054-0.071] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs737092-C	0.49451	5E-300				Affymetrix, Illumina [20825802] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.31	NR	rs737092-C	0.487759	1E-272		0.068264	[0.064-0.072] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1012	chr20	55990404	55990405	rs737092	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	20q13.31	NR	rs737092-T	0.495533	6E-31		0.048878	[0.041-0.057] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1012	chr20	55990404	55990405	rs737092	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.31		rs737092-?	NR	1E-34				NR [~ 8900000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	20q13.31	RBM38, CTCFL	rs737092-?	NR	1E-39		0.05739	[0.049-0.066] unit increase novel	Illumina [6108953] (imputed)	N
1012	chr20	55990404	55990405	rs737092	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	20q13.31	RBM38, CTCFL	rs737092-?	NR	2E-25		0.04538	[0.037-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1012	chr20	55990404	55990405	rs737092	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	20q13.31	RBM38	rs737092-C	0.35	8E-6		0.352	[0.2-0.51] fL increase	Illumina [27801688] (imputed)	N
1012	chr20	55990404	55990405	rs737092	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	20q13.31	RBM38	rs737092-T	NR	2E-7	(Asian)	0.0031	[0.0019-0.0043] unit increase	NR [2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	20q13.31	RBM38	rs737092-?	NR	2E-19				NR [2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	20q13.31	RBM38	rs737092-T	NR	3E-8	(Asian)	0.0039	[0.0025-0.0053] unit decrease	NR [2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	20q13.31	RBM38	rs737092-?	NR	1E-8				NR [2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	20q13.31	intergenic	rs737092-C	0.4891	5E-23		0.03546454	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	20q13.31	intergenic	rs737092-C	0.4892	4E-30		0.04082438	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55990404	55990405	rs737092	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	20q13.31	RBM38	rs737092-C	0.49	4E-13	(EA, MCV)	0.216	[0.15-0.28] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1012	chr20	55991478	55991479	rs6123697	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs6123697-A	0.366191	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1012	chr20	55991550	55991551	rs61547234	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.31		rs61547234-G	0.311447	5E-10		0.015178359	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991550	55991551	rs61547234	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.31	NR	rs61547234-G	0.313709	3E-14		0.015462	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	20q13.31		rs6014993-A	0.513	1E-180		0.32	[-0.34--0.3] % decrease	Affymetrix [NR] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	20q13.31		rs6014993-G	NR	2E-16		0.31	[0.23-0.39] unit increase	Illumina [97506867]	N
1012	chr20	55991636	55991637	rs6014993	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	20q13.31		rs6014993-G	NR	3E-13		0.11	[0.09-0.13] unit increase	Illumina [94681438]	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.31	NR	rs6014993-G	0.487339	9E-36		0.03057157	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.31	NR	rs6014993-G	0.487333	3E-49		0.036110934	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487237	3E-31		0.025949577	[0.022-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487334	1E-52		0.033896916	[0.03-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487267	7E-11		0.0147186	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487332	2E-304		0.083803356	[0.079-0.088] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.31		rs6014993-G	0.48749	8E-390		0.11877794	[0.11-0.12] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487309	6E-300		0.0814615	[0.077-0.086] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.31		rs6014993-G	0.487288	6E-211		0.0687424	[0.064-0.073] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.31		rs6014993-G	0.48734	8E-16		0.020738449	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs6014993-A	0.504693	1E-38				Affymetrix, Illumina [22063850] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q13.31	NR	rs6014993-A	0.509734	9E-41		0.02589	[0.022-0.03] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.31	NR	rs6014993-G	0.490701	6E-64		0.032059	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs6014993-G	0.512106	2E-439				Affymetrix, Illumina [24246363] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.31	NR	rs6014993-G	0.49069	2E-402		0.079985	[0.076-0.084] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	20q13.31		rs6014993-?	0.5757	3E-15		0.311	[0.23-0.39] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	20q13.31		rs6014993-?	0.652	6E-7		0.3289	[0.2-0.46] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	20q13.31		rs6014993-?	0.5757	8E-13		0.1083	[0.079-0.138] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	20q13.31		rs6014993-?	0.652	3E-7		0.124	[0.077-0.171] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	20q13.31		rs6014993-?	0.496	3E-7		0.1063	[0.066-0.147] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.31		rs6014993-?	NR	1E-48				NR [~ 8900000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.31		rs6014993-?	NR	2E-223				NR [~ 8900000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	20q13.31	MIR5095	rs6014993-G	NR	2E-10		0.0259103	[0.018-0.034] unit decrease	Affymetrix [16832071] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	20q13.31	intergenic	rs6014993-G	0.4887	1E-15		0.02853859	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q13.31	intergenic	rs6014993-G	0.4888	8E-119		0.08248181	[0.076-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55991636	55991637	rs6014993	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	20q13.31	intergenic	rs6014993-G	0.4888	4E-92		0.07266327	[0.066-0.08] unit increase	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	55991694	55991695	rs6092477	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	20q13.31	RBM38	rs6092477-G	0.42	1E-8		0.068	[0.044-0.092] unit decrease	Illumina [561583]	N
1012	chr20	56000641	56000642	rs80078371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q13.31	intergenic	rs80078371-C	0.0795	8E-10		0.04126926	[0.028-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	56001141	56001142	rs1555272	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.31		rs1555272-C	0.386471	3E-10		0.0151692815	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1012	chr20	56012987	56012988	rs4810067	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.31		rs4810067-A	0.102448	2E-13		0.02704831	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	56012987	56012988	rs4810067	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	20q13.31	intergenic	rs4810067-A	0.1022	3E-12		0.04143998	[0.03-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	56012987	56012988	rs4810067	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	20q13.31	intergenic	rs4810067-A	0.1022	1E-13		0.04409125	[0.032-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1012	chr20	56016071	56016072	rs13039273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.31		rs13039273-C	0.436719	5E-24		0.02338709	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1012	chr20	56016071	56016072	rs13039273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs13039273-T	0.562519	8E-35				Affymetrix, Illumina [17210439] (imputed)	N
1012	chr20	56016071	56016072	rs13039273	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.31	NR	rs13039273-T	0.564034	5E-38		0.025161	[0.021-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1012	chr20	56017754	56017755	rs328501	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Alteromonadaceae abundance in stool	5,959 Finnish ancestry individuals	NA	20q13.31		rs328501-C	0.321326	9E-9		0.0170641	[0.011-0.023] unit decrease	Illumina [7980478] (imputed)	N
1012	chr20	56019845	56019846	rs8115156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.31	RBM38	rs8115156-A	0.576325	3E-9	(-22 ms)	0.0328737	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
1012	chr20	56019845	56019846	rs8115156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.31	RBM38	rs8115156-A	0.576325	3E-12	(-24 ms)	0.0387895	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1012	chr20	56019845	56019846	rs8115156	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.31	RBM38	rs8115156-A	0.576325	2E-12	(-26 ms)	0.0392444	[0.028-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1012	chr20	56020598	56020599	rs34161672	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	20q13.31	RBM38	rs34161672-?	0.3248	4E-12		0.97	[0.96-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1012	chr20	56029603	56029604	rs328506	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	20q13.31	CTCFL, RBM38, HMG1L1, PCK1	rs328506-C	0.8	2E-6	(South Asians)	1.11	[1.06-1.15]	Illumina [1232008] (imputed)	N
1012	chr20	56044183	56044184	rs6070116	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	20q13.31	CTCFL, RBM38, HMG1L1	rs6070116-G	0.25	4E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
1012	chr20	56053765	56053766	rs11700223	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.31	NR	rs11700223-?		6E-6				Illumina [4322238] (imputed)	N
1012	chr20	56054885	56054886	rs7351513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.31		rs7351513-G	NR	1E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1012	chr20	56057092	56057093	rs61458527	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	20q13.31	NR	rs61458527-?	NR	3E-8				Illumina [7760689] (imputed)	N
1012	chr20	56058354	56058355	rs59972978	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		20q13.31	intergenic	rs59972978-?	0.2	5E-6		0.09	[0.051-0.129] unit decrease	Illumina [4058415] (imputed)	N
1012	chr20	56066048	56066049	rs113939876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q13.31		rs113939876-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1012	chr20	56070504	56070505	rs6025590	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.31	CTCFL, HMG1L1	rs6025590-A	0.308	4E-8	(Sedentary&light activity )	0.04	[NR] min/d increase	Illumina [899892]	N
1012	chr20	56080048	56080049	rs11700100	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	20q13.31	CTCFL	rs11700100-?	NR	8E-6				Affymetrix, Illumina [1348798]	N
1012	chr20	56098732	56098733	rs6025606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.31		rs6025606-T	NR	1E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1012	chr20	56098732	56098733	rs6025606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.31		rs6025606-T	0.377	5E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1012	chr20	56098732	56098733	rs6025606	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	20q13.31	NR	rs6025606-T	NR	2E-10		0.02	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1013	chr20	56100240	56100241	rs13040275	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.31		rs13040275-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1013	chr20	56100411	56100412	rs111878400	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.31	CTCFL	rs111878400-G	0.954397	2E-14		0.00430137	[0.0032-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
1013	chr20	56100635	56100636	rs78888165	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.31		rs78888165-C	NR	3E-11		0.0343	[0.024-0.044] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1013	chr20	56112804	56112805	rs11467030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.31		rs11467030-T	NR	2E-14		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1013	chr20	56112881	56112882	rs2039098	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	20q13.31		rs2039098-C	0.402846	8E-9		0.0241636	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1013	chr20	56112881	56112882	rs2039098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q13.31		rs2039098-T	NR	3E-11		0.0158	[0.011-0.021] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1013	chr20	56113782	56113783	rs7274718	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q13.31	CTCFL	rs7274718-G	0.401482	6E-15		0.0158539	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr20	56113782	56113783	rs7274718	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	20q13.31	APCDD1L	rs7274718-?	NR	6E-10		0.0166	[0.012-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1013	chr20	56119036	56119037	rs6070139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs6070139-G	0.547374	9E-33				Affymetrix, Illumina [24653286] (imputed)	N
1013	chr20	56119036	56119037	rs6070139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q13.31	NR	rs6070139-G	0.59709	1E-35		0.023419	[0.02-0.027] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1013	chr20	56119515	56119516	rs6064559	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.31	intergenic	rs6064559-C		9E-15		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1013	chr20	56119515	56119516	rs6064559	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	20q13.31	intergenic	rs6064559-A	0.598	7E-10		0.02224952	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.31	NR	rs1328757-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.31	NR	rs1328757-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.31		rs1328757-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	20q13.31	NR	rs1328757-T	0.48	4E-14		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	20q13.31	NR	rs1328757-T	0.48	5E-8				Affymetrix [2446094] (imputed)	N
1013	chr20	56135198	56135199	rs1328757	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	20q13.31	NA	rs1328757-T	0.4743	2E-10		0.0114	[0.0079-0.0149] unit increase	NR [~ 27400000] (imputed)	N
1013	chr20	56136473	56136474	rs147120329	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	20q13.31		rs147120329-?	NR	2E-17		0.154709	[0.11-0.2] unit increase	NR [9800000] (imputed)	N
1013	chr20	56136953	56136954	rs2236744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.31	NR	rs2236744-C	0.464433	2E-28				Affymetrix, Illumina [24558453] (imputed)	N
1013	chr20	56136953	56136954	rs2236744	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.31	NR	rs2236744-C	0.505062	2E-30		0.021394	[0.018-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1013	chr20	56137797	56137798	rs1062600	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.31	PCK1	rs1062600-A	0.464433	2E-17		0.018895512	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr20	56137833	56137834	rs1062601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.31	PCK1	rs1062601-G	0.505726	1E-24		0.022724446	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr20	56137833	56137834	rs1062601	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.31	PCK1	rs1062601-G	0.505743	2E-20		0.020625254	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1013	chr20	56137894	56137895	rs707555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q13.31		rs707555-C	NR	2E-17		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1013	chr20	56138039	56138040	rs2070755	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	20q13.31	PCK1	rs2070755-C	NR	9E-7	(Perc15, All)	2.5	[0.34-4.66] unit decrease	Illumina [7600000] (imputed)	N
1013	chr20	56138039	56138040	rs2070755	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	20q13.31	PCK1	rs2070755-C	NR	5E-7	(%LAA-950, All)	0.11	[0.018-0.202] unit increase	Illumina [7600000] (imputed)	N
1013	chr20	56138647	56138648	rs11552145	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	20q13.31	PCK1, CTCFL	rs11552145-?		2E-6				Illumina [2668805]	N
1013	chr20	56140438	56140439	rs41302559	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	20q13.31		rs41302559-?	NR	4E-13		0.131094	[0.092-0.17] unit decrease	NR [9800000] (imputed)	N
1013	chr20	56140438	56140439	rs41302559	31666285	Olafsson S	2019-10-30	Cancer Epidemiol Biomarkers Prev	Common and rare sequence variants influencing tumor biomarkers in blood.	Serum alkaline phosphatase levels	162,774 Icelandic ancestry individuals	NA	20q13.31	PCK1	rs41302559-A	0.009	3E-8		0.12	[0.17-0.08] unit decrease	Illumina [NR] (imputed)	N
1013	chr20	56140438	56140439	rs41302559	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	20q13.31	PCK1	rs41302559-A	0.0027	4E-8		0.152	[0.098-0.206] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1013	chr20	56140438	56140439	rs41302559	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	20q13.31	NR	rs41302559-A	NR	2E-14		0.15165453	[0.11-0.19] unit decrease	Illumina [242289]	N
1013	chr20	56143168	56143169	rs2235826	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	20q13.31	PCK1	rs2235826-A	0.8139	4E-13	(EA)	0.0033	[0.0023-0.0043] unit decrease	Affymetrix [NR] (imputed)	N
1013	chr20	56143168	56143169	rs2235826	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.31	PCK1	rs2235826-A	0.7932	6E-21		0.003	[0.0022-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1013	chr20	56143168	56143169	rs2235826	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.31	PCK1	rs2235826-A	0.8139	1E-19		0.0033	[0.0023-0.0043] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1013	chr20	56152649	56152650	rs16981149	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q13.31	NR	rs16981149-C	NR	2E-9		0.0359	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1013	chr20	56190633	56190634	rs2073145	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	20q13.31	ZBP1	rs2073145-?	NR	2E-6				Illumina [516645]	N
1013	chr20	56216698	56216698	rs59967896	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)(time to event)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	20q13.31	PMEPA1	rs59967896-?		8E-10	(EA)	3.75	[2.46-5.71]	Illumina [up to 8000000] (imputed)	N
1013	chr20	56216698	56216698	rs59967896	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	20q13.31	PMEPA1	rs59967896-?		2E-7	(EA)	4.1	[2.51-6.69]	Illumina [up to 8000000] (imputed)	N
1014	chr20	56250942	56250943	rs157089	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	20q13.31	NR	rs157089-T	0.745	3E-6	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	5.714286	[NR]	Affymetrix [> 650000] (imputed)	N
1014	chr20	56252955	56252956	rs157093	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	20q13.31	TMEPAI, ZBP1	rs157093-T	0.26	3E-6	(CVLT-dr, EA)	0.3615	[0.21-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1014	chr20	56314638	56314639	rs6015071	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	27 Korean ancestry child sibling pairs	NA	20q13.31	PMEPA1, MIR4532	rs6015071-A	0.274	2E-7				Affymetrix [432921]	N
1014	chr20	56322688	56322689	rs17346379	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.31	NR	rs17346379-G	0.02265	2E-8	(FKBP4)	0.0307	NR unit increase	Illumina [1671387] (imputed)	N
1014	chr20	56324084	56324085	rs62205790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.31		rs62205790-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1014	chr20	56324336	56324337	rs753984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.31	NR	rs753984-C	0.493	1E-8		0.00620938	[0.0041-0.0083] unit increase	NR [9732723] (imputed)	N
1014	chr20	56325451	56325452	rs62205791	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.31	NR	rs62205791-?	NR	7E-6		0.0076957	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1014	chr20	56326758	56326759	rs6025764	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q13.31		rs6025764-G	0.39	3E-8		5.56	z score increase	Affymetrix [9061022] (imputed)	N
1014	chr20	56332989	56332990	rs16981326	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.31	NR	rs16981326-?	NR	8E-13				Affymetrix [NR]	N
1015	chr20	56390337	56390338	rs6025798	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	20q13.32	NR	rs6025798-A	NR	3E-7		1.77	[NR]	Illumina [NR] (imputed)	N
1015	chr20	56428704	56428705	rs12481680	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	20q13.32	ZBP1, PMEPA1, PCK1	rs12481680-?	NR	2E-7	(Baseline)	0.22	[0.14-0.30] ng/dL increase	Affymetrix [2543887] (imputed)	N
1016	chr20	56501978	56501979	rs6099847	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.32	TMEPAI, C20orf85	rs6099847-G	0.169	7E-6	(Diet carbohydrate )	0.03	[NR] %energy increase	Illumina [899892]	N
1016	chr20	56518692	56518693	rs9680020	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	20q13.32	PMEPA1	rs9680020-?	NR	9E-6				Illumina [NR]	N
1016	chr20	56551116	56551117	rs17526879	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		20q13.32	NR	rs17526879-G	0.019323	9E-6		1.121	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1016	chr20	56554995	56554996	rs4455225	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	20q13.32		rs4455225-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1016	chr20	56555715	56555716	rs11696251	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q13.32	PMEPA1, C20orf85	rs11696251-A	0.42	1E-9		6.07	z-score increase	Affymetrix [4311822] (imputed)	N
1016	chr20	56556145	56556146	rs6123756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	20q13.32	NR	rs6123756-C	NR	3E-10		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1016	chr20	56558445	56558446	rs6064603	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	20q13.32	NR	rs6064603-A	0.01719	4E-6		0.5209	[0.3-0.74] unit decrease	Illumina [10677593] (imputed)	N
1016	chr20	56559151	56559152	rs55950385	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	20q13.32	RAB22A	rs55950385-G	0.122	9E-7		0.27	[0.16-0.45]	Affymetrix, Illumina [82996] (imputed)	N
1016	chr20	56580946	56580947	rs1413422	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.32	Intergenic	rs1413422-T	0.3549	7E-9	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr20	56597566	56597567	rs4811954	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.32	RAB22A	rs4811954-?	NR	1E-6	(LPE 18:2)	0.24360563	[0.15-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1017	chr20	56637521	56637521	rs35523860	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	20q13.32	NR	rs35523860-?	NR	4E-6		1.0850825	[1.05-1.12]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1017	chr20	56653724	56653724	rs201459901	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	20q13.32	C20orf85	rs201459901-?	NR	3E-16	(EA)	1.3157895		Illumina [12023830] (imputed)	N
1017	chr20	56663273	56663274	rs6070346	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	20q13.32	intergenic	rs6070346-?	NR	4E-6	(FEV1/FVC decline in asthmatics)	0.1735	[0.1-0.247] unit increase	Illumina [~ 2500000] (imputed)	N
1017	chr20	56676880	56676881	rs1192520	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.32	NR	rs1192520-?	NR	3E-7				Affymetrix [NR]	N
1017	chr20	56696757	56696758	rs147887150	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	20q13.32		rs147887150-?	NR	5E-7		1.79391		NR [NR] (imputed)	N
1017	chr20	56743534	56743535	rs4810121	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	20q13.32		rs4810121-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1018	chr20	56768911	56768912	rs474030	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.32	NR	rs474030-?	NR	2E-12				Affymetrix [NR]	N
1018	chr20	56778466	56778467	rs76974703	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	20q13.32		rs76974703-A	NR	2E-8		4.697041	NR	Affymetrix [7846216] (imputed)	N
1018	chr20	56796783	56796784	rs4811971	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	20q13.32	ANKRD60	rs4811971-C	0.39	6E-6		0.7	[NR] cm increase	Affymetrix [334546]	N
1018	chr20	56819166	56819167	rs3787159	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	20q13.32	PPP4R1L	rs3787159-?	NR	9E-6	(Puberty)	0.064	[0.037-0.091] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1018	chr20	56871087	56871088	rs4811981	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	2,314 European ancestry cases, 3,611 European ancestry controls	NA	20q13.32	PPP4R1L	rs4811981-C	0.3	4E-6		1.2195122	[1.12-1.33]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1018	chr20	56879554	56879555	rs480143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	20q13.32		rs480143-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1019	chr20	56936870	56936871	rs6026214	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.32	RAB22A	rs6026214-A	0.4261	1E-14		0.0148	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1019	chr20	56942311	56942312	rs707557	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	20q13.32	RAB22A	rs707557-?	NR	6E-6		1.46	[0.83-2.08] unit increase	Affymetrix [618793]	N
1019	chr20	56950953	56950954	rs6513380	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20q13.32	Intergenic	rs6513380-?		7E-6		2.98	[1.85-4.79]	Illumina [7645193] (imputed)	N
1021	chr20	57164854	57164855	rs127430	20838585	Smith EN	2010-09-09	PLoS Genet	Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.	Cardiovascular risk factors (age interaction)	525 European ancestry individuals	2,442 Finnish ancestry individuals	20q13.32	APCDD1L, STX16	rs127430-G	NR	1E-6	(waist circumference)	0.19	[0.11-0.27] unit decrease	Illumina [2173391] (imputed)	N
1021	chr20	57166283	57166284	rs6026382	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	20q13.32	APCDD1L-AS1	rs6026382-T	0.964	3E-6		1.7	[1.36-2.14]	Affymetrix, Illumina [12148595] (imputed)	N
1021	chr20	57171595	57171596	rs2281398	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	20q13.32	NR	rs2281398-A	0.1404	4E-6		0.0224	[0.013-0.032] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1021	chr20	57179728	57179729	rs6064679	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	20q13.32	NR	rs6064679-?	NR	3E-8		5.556	NR z score increase	Illumina [at least 830937] (imputed)	N
1021	chr20	57193548	57193549	rs6128386	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	20q13.32	LOC149773	rs6128386-?		1E-6				Affymetrix, Illumina [1348798]	N
1021	chr20	57196083	57196084	rs218454	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota beta diversity (weighted UniFrac distance)	1,068 Japanese ancestry individuals	NA	20q13.32	intergenic	rs218454-T	0.04	2E-6		5.15	z score increase	Illumina [6380737] (imputed)	N
1021	chr20	57237669	57237670	rs218476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.32		rs218476-A	NR	4E-9		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1021	chr20	57237669	57237670	rs218476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.32		rs218476-A	NR	3E-8		0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1021	chr20	57237669	57237670	rs218476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.32	STX16-NPEPL1, STX16	rs218476-A	0.377838	1E-10		0.014795652	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1021	chr20	57250763	57250764	rs6123818	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	70,998 European ancestry men	NA	20q13.32		rs6123818-A	0.516	3E-8		0.023	[0.015-0.031] unit decrease	Affymetrix [8817117] (imputed)	N
1021	chr20	57270663	57270664	rs117094540	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.32	NPEPL1	rs117094540-T	0.999	1E-6	(AA)	0.35	unit increase	Illumina [NR] (imputed)	N
1021	chr20	57272616	57272617	rs6026449	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q13.32	STX16-NPEPL1, GNAS	rs6026449-C	0.627232	2E-10		0.016962	[0.012-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1021	chr20	57274443	57274444	rs191772384	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	20q13.32	intergenic	rs191772384-C	0.0046	5E-6		0.3541	[0.2-0.51] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1022	chr20	57280574	57280575	rs6100174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q13.32	NR	rs6100174-C	0.624844	2E-13		0.0204027	[0.015-0.026] unit increase	Affymetrix [16580851] (imputed)	N
1022	chr20	57281808	57281809	rs8115194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	20q13.32		rs8115194-T	NR	8E-9		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1022	chr20	57284928	57284929	rs139222478	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.32	NPEPL1	rs139222478-G	0.999	3E-6	(AA)	0.366	unit increase	Illumina [NR] (imputed)	N
1022	chr20	57290346	57290347	rs6026468	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.32	STX16-NPEPL1	rs6026468-C	0.40172	1E-11		0.00164581	[0.0012-0.0021] unit decrease	Affymetrix [13995440] (imputed)	N
1022	chr20	57290704	57290705	rs12220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q13.32		rs12220-C	NR	1E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1022	chr20	57290845	57290846	rs8978	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.32	NR	rs8978-C	0.401743	8E-11		0.0135749	[0.0095-0.0177] unit decrease	NR [NR]	N
1022	chr20	57306695	57306696	rs436778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q13.32		rs436778-A	NR	5E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1022	chr20	57356050	57356051	rs76507695	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.32	Intergenic	rs76507695-G	0.999	3E-7	(AA)	0.328	unit increase	Illumina [NR] (imputed)	N
1022	chr20	57387261	57387262	rs911300	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.32	NR	rs911300-G	0.5422	5E-14		0.0348	[0.026-0.044] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1022	chr20	57394627	57394628	rs6070625	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.32	GNAS	rs6070625-G	0.5174	5E-14		1.05	[1.04-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1022	chr20	57396494	57396495	rs4810145	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	20q13.32	NR	rs4810145-C	NR	3E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
1022	chr20	57396494	57396495	rs4810145	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.32	NR	rs4810145-C	0.5221	1E-15		0.0303	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1022	chr20	57403222	57403223	rs73129526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q13.32		rs73129526-C	NR	5E-10		0.0203	[0.014-0.027] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1022	chr20	57406067	57406068	rs76473307	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	20q13.32	NR	rs76473307-A	0.97	7E-6		1.4285715	[1.22-1.67]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1022	chr20	57406387	57406387	rs142530265	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q13.32	GNAS-AS1	rs142530265-?	NR	2E-20		0.051613383	[0.041-0.063] unit decrease	Illumina [27896057] (imputed)	N
1022	chr20	57408425	57408426	rs965808	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	20q13.32	GNAS, GNAS-AS1	rs965808-G	0.22	5E-9	(NESPAS-ICR)			Illumina [515966]	N
1023	chr20	57424867	57424868	rs79067846	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	GNAS, GNAS-AS1	rs79067846-C	0.0155	5E-54		0.2318122	[0.2-0.26] unit increase	Affymetrix [~ 2500000] (imputed)	N
1023	chr20	57427950	57427951	rs117455294	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	20q13.32	GNAS	rs117455294-C	0.948721	1E-9		0.0193211	[0.013-0.026] unit increase	Affymetrix [12370749]	N
1023	chr20	57432605	57432606	rs58744877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.32		rs58744877-A	NR	3E-33		0.0405	[0.034-0.047] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1023	chr20	57432605	57432606	rs58744877	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	20q13.32	GNAS	rs58744877-?	NR	2E-38		0.06193202	[0.053-0.071] unit decrease	Illumina [27896057] (imputed)	N
1023	chr20	57434299	57434300	rs190166793	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	20q13.32	NR	rs190166793-?	NR	3E-6		1.4061	[0.81-2] unit increase	NR [13958389] (imputed)	N
1023	chr20	57457341	57457342	rs186485497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.32	GNAS	rs186485497-A	0.999	2E-6	(AA)	0.278	unit increase	Illumina [NR] (imputed)	N
1023	chr20	57457768	57457769	rs4481060	31586183	Niazi Y	2019-10-04	Mutagenesis	Distinct pathways associated with chromosomal aberration frequency in a cohort exposed to genotoxic compounds compared to general population.	Chromosomal aberration frequency (chromatid type) in genotoxic compound exposure	607 European and unknown ancestry individuals	NA	20q13.32	NR	rs4481060-?	NR	8E-6		0.16	[0.09-0.23] unit decrease	Illumina [> 2600000] (imputed)	N
1023	chr20	57457818	57457819	rs75803555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.32	NR	rs75803555-T	NR	1E-12		0.0227	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1023	chr20	57458103	57458104	rs60865276	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	20q13.32		rs60865276-T	NR	5E-23		0.0195	[0.016-0.023] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1023	chr20	57458103	57458104	rs60865276	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.32	NR	rs60865276-T	NR	2E-13		0.0184	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1023	chr20	57459867	57459868	rs76602912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	20q13.32		rs76602912-C	NR	4E-11		0.2376	[0.17-0.31] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1023	chr20	57459867	57459868	rs76602912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.32		rs76602912-C	NR	1E-9		0.0455	[0.031-0.06] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1023	chr20	57459867	57459868	rs76602912	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.32	NR	rs76602912-C	NR	9E-14		0.0593	[0.044-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1023	chr20	57459867	57459868	rs76602912	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.32	GNAS	rs76602912-T	0.976212	4E-12		0.04341	[0.031-0.056] unit increase	Affymetrix [NR] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	20q13.32		rs6026578-G	0.723155	7E-12		0.0269085	[0.019-0.035] unit decrease	Illumina [13475706] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q13.32		rs6026578-G	NR	2E-19		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	20q13.32		rs6026578-G	0.723612	4E-11		0.021068	[0.015-0.027] unit decrease	Illumina [13478778] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.32	GNAS	rs6026578-C	0.375	3E-14		0.015	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20q13.32	GNAS	rs6026578-C	0.2768	8E-10	(East Asian)	0.0397	[0.027-0.052] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	20q13.32	LOC101927932	rs6026578-C	0.278	5E-10	(Japanese)	0.028	[0.018-0.038] unit increase	Illumina [5864938] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	20q13.32	LOC101927932	rs6026578-?	NR	2E-8		0.02659	[0.017-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	20q13.32	LOC101927932	rs6026578-?	NR	1E-10		0.02683	[0.019-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	20q13.32	LOC101927932	rs6026578-?	NR	3E-10		0.02583	[0.018-0.034] unit decrease novel	Illumina [6108953] (imputed)	N
1023	chr20	57463471	57463472	rs6026578	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	20q13.32	LOC101927932	rs6026578-?	NR	3E-13		0.02895	[0.021-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
1023	chr20	57463992	57463993	rs6026579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20q13.32		rs6026579-T	0.723729126	6E-9		0.05323612	[0.035-0.071] unit decrease	Illumina [13134967] (imputed)	N
1023	chr20	57466092	57466093	rs185799410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	20q13.32	GNAS	rs185799410-T	NR	3E-10		0.0567234	[0.039-0.074] unit decrease	Affymetrix [321016] (imputed)	N
1023	chr20	57466092	57466093	rs185799410	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	20q13.32	GNAS	rs185799410-T	NR	1E-10		0.063366	[0.044-0.083] unit decrease	Affymetrix [323123] (imputed)	N
1023	chr20	57466092	57466093	rs185799410	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	20q13.32	NR	rs185799410-T	0.02602	2E-8		0.00399	[0.0026-0.0054] unit decrease	Affymetrix [NR] (imputed)	N
1023	chr20	57466092	57466093	rs185799410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.32		rs185799410-?	NR	3E-34				NR [~ 8900000] (imputed)	N
1023	chr20	57468149	57468150	rs6026580	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	20q13.32	GNAS	rs6026580-T	0.6572	2E-8		0.0052	[0.0034-0.007] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1023	chr20	57469072	57469073	rs6026584	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	20q13.32	GNAS	rs6026584-T	0.32	9E-9		0.0052	[0.0034-0.0070] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1023	chr20	57471290	57471290	rs397768861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	20q13.32		rs397768861-AT	NR	5E-15		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1023	chr20	57471290	57471290	rs397768861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	20q13.32		rs397768861-AT	0.725363	5E-9		0.0223869	[0.015-0.03] unit decrease	Illumina [13477767] (imputed)	N
1023	chr20	57471290	57471290	rs397768861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	20q13.32		rs397768861-AT	0.72555	3E-33		0.0271918	[0.023-0.032] unit increase	Illumina [13479295] (imputed)	N
1023	chr20	57472042	57472043	rs2057291	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20q13.32	NR	rs2057291-A	0.35	4E-8		0.0107	[0.0068-0.0146] unit increase	NR [NR]	N
1023	chr20	57472042	57472043	rs2057291	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference adjusted for body mass index	up to 44,609 East Asian individuals	up to 24,146 East Asian individuals, up to 229,290 individuals	20q13.32	GNAS	rs2057291-G	0.733	4E-8	(East Asian)	0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	20q13.32		rs1407040-T	0.726128	8E-10		0.0239136	[0.016-0.032] unit decrease	Illumina [13477770] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	20q13.32	NR	rs1407040-T	NR	2E-11		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	20q13.32	GNAS	rs1407040-T	0.6851	6E-14		0.0248	[0.018-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	20q13.32	GNAS	rs1407040-T	0.6615	3E-7		0.020609	[0.013-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	20q13.32	NR	rs1407040-T	0.6897	4E-6	(men)	0.0245	[0.014-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	20q13.32	NR	rs1407040-T	0.6826	2E-8	(women)	0.027	[0.018-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.32	GNAS	rs1407040-T	0.6756	2E-11		0.0018	[0.0012-0.0024] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	20q13.32	GNAS	rs1407040-T	0.7288	2E-6		0.0035	[0.0019-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	20q13.32	GNAS, RP1-309F20.4	rs1407040-C	0.3174	4E-8		5.48	NR z score decrease	Illumina [26237160] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.32	GNAS	rs1407040-T	0.7249	9E-6	(Japanese)	0.2371	[0.13-0.34] unit decrease	Illumina [6200000] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	20q13.32	GNAS	rs1407040-?	NR	4E-8		0.02353	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1023	chr20	57472173	57472174	rs1407040	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	20q13.32	GNAS	rs1407040-?	NR	6E-9		0.02473	[0.016-0.033] unit decrease	Illumina [6108953] (imputed)	N
1023	chr20	57473727	57473728	rs76801208	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	20q13.32	GNAS	rs76801208-?	NR	2E-7		7.31	[3.44-15.53]	Illumina [9380034] (imputed)	N
1023	chr20	57475190	57475191	rs13831	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	20q13.32	GNAS	rs13831-G	0.684	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1023	chr20	57475190	57475191	rs13831	21184583	Zlojutro M	2010-11-02	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of theta band event-related oscillations identifies serotonin receptor gene HTR7 influencing risk of alcohol dependence.	Event-related brain oscillations	431 European ancestry alcohol dependence cases, 340 European ancestry controls, 209 African American alcohol dependence cases, 84 African American controls	683 alcohol dependence cases and 412 controls from multiplex families	20q13.32	GNAS1	rs13831-T	0.24	6E-6		0.21	[0.11-0.31] uV decrease	Illumina [951071]	N
1023	chr20	57477103	57477104	rs6026591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.32	NR	rs6026591-T	NR	9E-10		0.0153	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1023	chr20	57477183	57477184	rs11477757	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	20q13.32	GNAS	rs11477757-TC	0.669	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1023	chr20	57478845	57478846	rs11554266	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	20q13.32	GNAS	rs11554266-?	3.99042E-4	2E-16				Illumina [~ 244000]	N
1023	chr20	57478845	57478846	rs11554266	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	20q13.32	GNAS	rs11554266-?	3.99042E-4	2E-16				Illumina [~ 244000]	N
1023	chr20	57478845	57478846	rs11554266	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	20q13.32	GNAS	rs11554266-?	3.86399E-4	2E-16				Illumina [~ 244000]	N
1023	chr20	57478845	57478846	rs11554266	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	20q13.32	GNAS	rs11554266-?	3.86399E-4	2E-16				Illumina [~ 244000]	N
1023	chr20	57482239	57482240	rs117041046	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.32	GNAS	rs117041046-C	0.999	9E-7	(AA)	0.309	unit increase	Illumina [NR] (imputed)	N
1023	chr20	57526119	57526120	rs141887296	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs141887296-G	0.0035	8E-35		0.4443508	[0.37-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
1023	chr20	57532782	57532782	rs140772178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.32		rs140772178-GCACT	NR	2E-13		0.0375	[0.028-0.047] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1023	chr20	57532782	57532782	rs140772178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	20q13.32		rs140772178-GCACT	0.087475	2E-13		0.0375384	[0.028-0.048] unit decrease	Illumina [13479924] (imputed)	N
1023	chr20	57532782	57532782	rs140772178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	20q13.32		rs140772178-GCACT	0.087046	1E-13		0.0472077	[0.035-0.06] unit increase	Illumina [13478792] (imputed)	N
1023	chr20	57536126	57536127	rs6070664	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.32	CTSZ	rs6070664-G	0.9728125	8E-60	(CTSZ, 4971_1_1)	1.1855597	[1.05-1.33] unit increase	Illumina [> 1000000] (imputed)	N
1024	chr20	57551098	57551099	rs862016	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	20q13.32	GNAS	rs862016-G	0.0783	1E-7		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1024	chr20	57552460	57552461	rs185523698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.32	NELFCD	rs185523698-T	0.0240590000000001	1E-22		0.07553377	[0.06-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57552460	57552461	rs185523698	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.32	NELFCD	rs185523698-T	0.0245	8E-27		0.1279017	[0.1-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57553503	57553504	rs343829	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	NELFCD	rs343829-C	0.9287	6E-27		0.0751071	[0.061-0.089] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57562101	57562102	rs2273359	23753411	Turner ST	2013-06-10	Hypertension	Genomic association analysis of common variants influencing antihypertensive response to hydrochlorothiazide.	Response to diuretic therapy in hypertension	424 European ancestry individuals	841 European ancestry individuals	20q13.32	TH1L, EDN3, GNAS	rs2273359-C	0.04	6E-8		8.15	[NR] mm Hg increase	Illumina [1092841] (imputed)	N
1024	chr20	57570243	57570244	rs141906507	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CTSZ	rs141906507-?	NR	3E-12	(male)	1.13376	[NR] unit increase	Affymetrix [NR] (imputed)	N
1024	chr20	57570567	57570568	rs13720	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	CTSZ	rs13720-A	0.812	1E-63		0.07744698	[0.068-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57572708	57572709	rs199825459	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTSZ	5,363 Icelandic ancestry individuals	NA	20q13.32		rs199825459-G	0.01397	7E-146		1.92186	[1.78-2.07] unit decrease	Illumina [7506463] (imputed)	N
1024	chr20	57572708	57572709	rs199825459	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.32	CTSZ	rs199825459-G	0.01	3E-76	(Cathepsin Z, CTSZ.4971.1.1)	2.2	[1.96-2.44] unit decrease	Affymetrix [10572788] (imputed)	N
1024	chr20	57573720	57573721	rs118030951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.32	CTSZ	rs118030951-C	0.024047	2E-12		0.054295078	[0.039-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57575101	57575102	rs13045590	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	CTSZ	rs13045590-T	0.149324	2E-10		0.02080979	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57575593	57575594	rs163790	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q13.32		rs163790-C	0.286	4E-41				Affymetrix [10369434] (imputed)	N
1024	chr20	57575593	57575594	rs163790	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.32	CTSZ	rs163790-T	0.714916	4E-10		0.015330547	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57575593	57575594	rs163790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs163790-T	0.756081	2E-10				Affymetrix, Illumina [24558453] (imputed)	N
1024	chr20	57575593	57575594	rs163790	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.32	NR	rs163790-T	0.714357	2E-12		0.01454	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1024	chr20	57578741	57578742	rs571971615	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	CTSZ	rs571971615-G	0.0014	2E-24		0.5336719	[0.43-0.64] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57580067	57580068	rs163803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.32	CTSZ	rs163803-C	0.9336512	5E-9		0.026469598	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57586022	57586023	rs779314480	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.32	CTSZ	rs779314480-C	0.5611	4E-34		0.04692771	[0.039-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57586952	57586953	rs151336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.32	CTSZ	rs151336-G	0.652992	3E-16		0.021435004	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57587770	57587771	rs4812048	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	20q13.32	CTSZ	rs4812048-C	NR	7E-6		0.09	[NR] unit increase	Illumina [476395]	N
1024	chr20	57587770	57587771	rs4812048	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	20q13.32	TUBB1, CTSZ	rs4812048-C	NR	1E-9		0.008	[0.006-0.01] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1024	chr20	57589765	57589766	rs151349	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.32	TUBB1	rs151349-C	0.47033	6E-16		0.021349438	[0.016-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57589765	57589766	rs151349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	TUBB1	rs151349-C	0.4716	2E-9		0.02159473	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57589994	57589995	rs55905547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.32	NR	rs55905547-A	0.816615	4E-191		0.073268	[0.068-0.078] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1024	chr20	57593157	57593158	rs7266693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	20q13.32		rs7266693-C	0.11795	8E-21		0.0481362	[0.038-0.058] unit increase	Illumina [13478928] (imputed)	N
1024	chr20	57594611	57594612	rs773248042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs773248042-T	9.80000000000425E-5	3E-15		1.5776248	[1.19-1.97] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.32		rs34524896-T	NR	6E-12		0.0257	[0.018-0.033] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q13.32		rs34524896-C	0.952	3E-14				Affymetrix [10369434] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	20q13.32		rs34524896-C	0.952	3E-24				Affymetrix [10369434] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.32	TUBB1	rs34524896-T	0.048018	1E-65		0.09450819	[0.084-0.105] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs34524896-T	0.0535646	1E-11				Affymetrix, Illumina [24653286] (imputed)	N
1024	chr20	57594683	57594684	rs34524896	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q13.32	NR	rs34524896-T	0.048544	3E-12		0.030464	[0.022-0.039] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1024	chr20	57596252	57596253	rs62205396	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs62205396-T	0.012113	5E-13		0.073493846	[0.054-0.093] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57596491	57596492	rs186658310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	TUBB1	rs186658310-A	0.0011	1E-13		0.4167888	[0.31-0.53] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57597010	57597011	rs62205397	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.32		rs62205397-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1024	chr20	57597010	57597011	rs62205397	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	20q13.32	TUBB1	rs62205397-?	NR	5E-15		0.05138	[0.039-0.064] unit increase novel	Illumina [6108953] (imputed)	N
1024	chr20	57597450	57597451	rs141152635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	TUBB1	rs141152635-G	0.0026	3E-34		0.4449678	[0.37-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57597644	57597645	rs6070696	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q13.32		rs6070696-A	0.815	6E-24				Affymetrix [10369434] (imputed)	N
1024	chr20	57597644	57597645	rs6070696	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	20q13.32		rs6070696-A	0.1736	3E-9		0.1408	[0.094-0.187] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1024	chr20	57597644	57597645	rs6070696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	20q13.32	NR	rs6070696-A	0.883156	1E-16		0.047754	[0.036-0.059] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1024	chr20	57597644	57597645	rs6070696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs6070696-A	0.815784	2E-191				Affymetrix, Illumina [17210439] (imputed)	N
1024	chr20	57597644	57597645	rs6070696	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	20q13.32	NR	rs6070696-A	0.833717	2E-9		0.112057	[0.075-0.149] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
1024	chr20	57597969	57597970	rs463312	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs463312-C	0.048016	4E-2659		0.6097534	[0.6-0.62] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597969	57597970	rs463312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs463312-C	0.0542489	5E-18				Affymetrix, Illumina [24332387] (imputed)	N
1024	chr20	57597969	57597970	rs463312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.32	NR	rs463312-C	0.048805	4E-19		0.039195	[0.031-0.048] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1024	chr20	57597969	57597970	rs463312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.32		rs463312-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.04774	4E-21		0.04913767	[0.039-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047739	2E-27		0.056713574	[0.046-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047744	6E-15		0.04042587	[0.03-0.051] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047949	8E-228		0.16952397	[0.16-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047938	1E-116		0.12622501	[0.12-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047762	4E-19		0.046363372	[0.036-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.32	TUBB1	rs415064-C	0.047762	7E-24		0.052313093	[0.042-0.062] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57597970	57597971	rs415064	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.32	TUBB1	rs415064-C		6E-12		0.034	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1024	chr20	57598332	57598332	rs11471957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.32	TUBB1	rs11471957-CAA	0.184759	1E-10		0.022275528	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57598332	57598332	rs11471957	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.32	TUBB1	rs11471957-CAA	0.184756	5E-140		0.08080817	[0.075-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57598332	57598332	rs11471957	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20q13.32	TUBB1	rs11471957-CAA	0.1842	3E-27		0.05097165	[0.042-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57598332	57598332	rs11471957	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.32	TUBB1	rs11471957-CAA	0.1844	7E-57		0.07418731	[0.065-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57598606	57598607	rs767380935	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs767380935-?	NR	2E-75		1.81285	[1.61-2.01] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598606	57598607	rs767380935	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs767380935-?	NR	2E-28		1.09803	[0.9-1.29] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598606	57598607	rs767380935	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs767380935-?	NR	4E-13		0.650123	[0.47-0.83] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.32		rs41303899-A	NR	4E-105		0.6851	[0.62-0.75] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs41303899-?	NR	1E-726		1.46873	[1.42-1.52] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs41303899-?	NR	1E-189		0.729523	[0.68-0.78] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs41303899-?	NR	1E-242		0.768135	[0.72-0.82] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.32	TUBB1	rs41303899-A	0.00115500000000002	8E-24		0.33327094	[0.27-0.4] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs41303899-A	0.00114099999999995	2E-494		1.5638208	[1.5-1.63] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.32	TUBB1	rs41303899-A	0.00115500000000002	8E-67		0.5739231	[0.51-0.64] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.32	TUBB1	rs41303899-A	0.00115699999999996	1E-73		0.6005599	[0.54-0.67] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs41303899-G	0.998717	8E-111				Affymetrix, Illumina [24588908] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.32	NR	rs41303899-G	0.998718	6E-115		0.616825	[0.56-0.67] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	TUBB1	rs41303899-A	0.0013	1E-134		1.298172	[1.2-1.4] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	20q13.32	TUBB1	rs41303899-A	0.0014	3E-30		0.5986837	[0.5-0.7] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.32	TUBB1	rs41303899-A	0.0013	8E-36		0.6628729	[0.56-0.77] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57598807	57598808	rs41303899	24777453	Auer PL	2014-04-28	Nat Genet	Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.	Platelet count	24,814 European ancestry individuals	6,526 European ancestry individuals	20q13.32	TUBB1	rs41303899-A	0.0016	1E-9		32.8	[22.22-43.38] unit decrease	Illumina [183585]	N
1024	chr20	57598881	57598882	rs199948010	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs199948010-?	NR	1E-67		1.78302	[1.57-2] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598881	57598882	rs199948010	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs199948010-?	NR	3E-22		0.902163	[0.7-1.1] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598909	57598910	rs1288846087	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs1288846087-?	NR	2E-31		1.87025	[1.55-2.19] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598909	57598910	rs1288846087	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs1288846087-?	NR	2E-9		0.888212	[0.58-1.2] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598909	57598910	rs1288846087	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs1288846087-?	NR	4E-12		1.04031	[0.75-1.33] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598917	57598918	rs371852125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs371852125-?	NR	1E-55		2.08634	[1.82-2.35] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598917	57598918	rs371852125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs371852125-?	NR	4E-17		1.11276	[0.86-1.37] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598917	57598918	rs371852125	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs371852125-?	NR	2E-17		0.994535	[0.76-1.23] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598965	57598966	rs143819330	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs143819330-?	NR	3E-51		1.77852	[1.54-2.02] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598965	57598966	rs143819330	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs143819330-?	NR	6E-16		0.908453	[0.67-1.15] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57598965	57598966	rs143819330	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs143819330-?	NR	1E-11		0.707361	[0.48-0.93] unit increase	NR [9800000] (imputed)	N
1024	chr20	57598966	57598967	rs151081609	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs151081609-?	NR	2E-14		0.452332	[0.33-0.57] unit increase	NR [9800000] (imputed)	N
1024	chr20	57599202	57599203	rs368923302	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs368923302-?	NR	1E-256		2.0929	[1.97-2.22] unit increase	NR [9800000] (imputed)	N
1024	chr20	57599202	57599203	rs368923302	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	20q13.32		rs368923302-?	NR	9E-91		1.19184	[1.07-1.31] unit decrease	NR [9800000] (imputed)	N
1024	chr20	57599202	57599203	rs368923302	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	20q13.32		rs368923302-?	NR	4E-76		1.01005	[0.9-1.12] unit increase	NR [9800000] (imputed)	N
1024	chr20	57599302	57599303	rs35565630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs35565630-T	0.022441	6E-125		0.17961091	[0.16-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57599341	57599342	rs139473150	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	TUBB1	rs139473150-T	2.87000000000037E-4	5E-14		0.5137797	[0.38-0.65] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57599341	57599342	rs139473150	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	TUBB1	rs139473150-T	3.0E-4	8E-21		1.04984	[0.83-1.27] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57599700	57599701	rs779957131	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	20q13.32		rs779957131-?	NR	5E-14		1.78491	[1.32-2.25] unit increase	NR [9800000] (imputed)	N
1024	chr20	57601994	57601995	rs151352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	ATP5E	rs151352-G	0.671711	9E-173		0.07372286	[0.069-0.079] unit increase	Affymetrix [93095623] (imputed)	N
1024	chr20	57610823	57610824	rs141490673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	20q13.32	SLMO2	rs141490673-G	0.0155	2E-10		0.09477719	[0.066-0.124] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57613940	57613943	rs578092393	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	SLMO2	rs578092393-A	0.0035	2E-47		0.4668211	[0.4-0.53] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57614001	57614002	rs151361	22423221	Qayyum R	2012-03-08	PLoS Genet	A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans.	Platelet count	16,388 African American individuals	NA	20q13.32	TUBB1, SLMO2	rs151361-A	0.257	9E-9		4.49	[2.96-6.02] 10^9 L increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
1024	chr20	57614507	57614510	rs144360277	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	SLMO2	rs144360277-C	0.0224	3E-49		0.1796701	[0.16-0.2] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57614769	57614770	rs184977442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	SLMO2	rs184977442-G	0.02589	1E-21		0.06856745	[0.055-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
1024	chr20	57638678	57638679	rs142680548	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs142680548-T	0.0056	5E-56		0.3910234	[0.34-0.44] unit increase	Affymetrix [~ 2500000] (imputed)	N
1024	chr20	57648365	57648366	rs140896965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.32		rs140896965-T	NR	1E-16		0.2313	[0.18-0.29] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1024	chr20	57661597	57661598	rs6026692	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	20q13.32	NR	rs6026692-A	NR	7E-7				Affymetrix [at least 811691] (imputed)	N
1025	chr20	57673949	57673950	rs4812056	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs4812056-C	0.2541	4E-87		0.08379067	[0.075-0.092] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57681204	57681205	rs58368959	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	20q13.32	NR	rs58368959-?	NR	1E-8	(Clostridium_cellulolyticum)	0.35596	[0.24-0.47] unit increase	Illumina [5293637] (imputed)	N
1025	chr20	57684611	57684612	rs6100340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.32		rs6100340-?	NR	1E-24				NR [~ 8900000] (imputed)	N
1025	chr20	57693628	57693629	rs236710	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	20q13.32	intergenic	rs236710-T	0.816	3E-8		0.047	[0.029-0.065] unit decrease	Affymetrix [7947838] (imputed)	N
1025	chr20	57706523	57706524	rs7267618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.32		rs7267618-?	NR	2E-37				NR [~ 8900000] (imputed)	N
1025	chr20	57708413	57708414	rs558916355	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs558916355-T	0.0061	3E-61		0.4589503	[0.4-0.51] unit increase	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57714024	57714025	rs260020	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	20q13.32	intergenic	rs260020-T	0.1309	8E-10		0.0518	[0.035-0.068] unit increase	Affymetrix [at least 7947838] (imputed)	N
1025	chr20	57714224	57714225	rs260019	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q13.32		rs260019-T	0.402	7E-9				Affymetrix [10369434] (imputed)	N
1025	chr20	57714766	57714767	rs459588	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20q13.32	ZNF831	rs459588-A	0.87	2E-26	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57715797	57715798	rs78953748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20q13.32		rs78953748-G	NR	4E-27		0.1053	[0.086-0.125] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1025	chr20	57725662	57725663	rs73306860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.32		rs73306860-?	NR	2E-42				NR [~ 8900000] (imputed)	N
1025	chr20	57728268	57728269	rs6026729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20q13.32		rs6026729-T	NR	6E-20		0.0352	[0.028-0.043] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1025	chr20	57728347	57728348	rs259991	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	20q13.32	ZNF831	rs259991-G	0.05	3E-6	(HRTSE)	1.78	[1.04-2.52] unit decrease	Illumina [799713]	N
1025	chr20	57728888	57728889	rs259990	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q13.32	SLMO2-ATP5E, ZNF831	rs259990-?	NR	2E-10		0.0486918	[0.034-0.064] unit increase	Illumina [4804024] (imputed)	N
1025	chr20	57729358	57729359	rs6026732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	20q13.32		rs6026732-C	NR	1E-16		0.106	[0.081-0.131] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1025	chr20	57730417	57730418	rs75245746	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	20q13.32		rs75245746-C	NR	3E-12		0.0937	[0.067-0.12] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1025	chr20	57734752	57734753	rs1535271	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	20q13.32		rs1535271-G	0.793	9E-13				Affymetrix [10369434] (imputed)	N
1025	chr20	57735447	57735448	rs78302204	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	20q13.32	ZNF831	rs78302204-A	0.105716	1E-16		0.10652773	[0.081-0.132] unit increase	Affymetrix [7288503] (imputed)	N
1025	chr20	57735447	57735448	rs78302204	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	20q13.32	ZNF831	rs78302204-A	0.105587	1E-12		0.0956007	[0.069-0.122] unit increase	Affymetrix [7288503] (imputed)	N
1025	chr20	57735456	57735457	rs259983	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	20q13.32		rs259983-C	0.14	3E-10		1.17	[1.11-1.23]	Illumina [11796347] (imputed)	N
1025	chr20	57735456	57735457	rs259983	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20q13.32	ZNF831	rs259983-C	0.132896	8E-12		0.0814781	[0.058-0.105] unit increase	Affymetrix [7288503] (imputed)	N
1025	chr20	57735456	57735457	rs259983	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	20q13.32	ZNF831	rs259983-A	0.87	6E-21	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57736362	57736363	rs536403690	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs536403690-T	0.0024	8E-32		0.4424143	[0.37-0.52] unit increase	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57739468	57739469	rs6026739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q13.32		rs6026739-T	NR	6E-20		0.0278	[0.022-0.034] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1025	chr20	57739468	57739469	rs6026739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20q13.32		rs6026739-T	NR	2E-14		0.0742	[0.055-0.093] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1025	chr20	57739468	57739469	rs6026739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q13.32		rs6026739-T	NR	1E-22		0.0304	[0.024-0.036] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1025	chr20	57739468	57739469	rs6026739	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.32	ZNF831	rs6026739-T	0.11701	4E-28		0.10348574	[0.085-0.122] unit increase	Affymetrix [7288503] (imputed)	N
1025	chr20	57739468	57739469	rs6026739	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q13.32	ZNF831	rs6026739-T	0.8587	2E-15		0.3899	[0.29-0.49] mmHg decrease	Affymetrix [NR] (imputed)	N
1025	chr20	57740347	57740348	rs6026740	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20q13.32	ZNF831	rs6026740-A	0.87	4E-15	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57740347	57740348	rs6026740	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	20q13.32	ZNF831	rs6026740-A	0.86	8E-10	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57740347	57740348	rs6026740	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20q13.32	ZNF831	rs6026740-A	0.87	6E-34	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57745814	57745815	rs6026748	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	20q13.32	GNAS, EDN3	rs6026748-A	0.125	3E-22		0.867	[0.69-1.04] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1025	chr20	57745814	57745815	rs6026748	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	20q13.32	GNAS, EDN3	rs6026748-A	0.125	5E-24		0.552	[0.44-0.66] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
1025	chr20	57748368	57748369	rs259981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	20q13.32		rs259981-A	NR	1E-19		0.0202	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1025	chr20	57748368	57748369	rs259981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.32		rs259981-A	0.358639	1E-16		0.019486964	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr20	57748368	57748369	rs259981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.32		rs259981-A	0.358652	1E-23		0.023445677	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr20	57748368	57748369	rs259981	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.32		rs259981-A	0.35863	3E-21		0.022410296	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1025	chr20	57748368	57748369	rs259981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.32	NR	rs259981-A	0.365021	3E-41				Affymetrix, Illumina [23472807] (imputed)	N
1025	chr20	57748368	57748369	rs259981	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.32	NR	rs259981-A	0.360441	4E-42		0.027105	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1025	chr20	57748368	57748369	rs259981	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	20q13.32	intergenic	rs259981-A	0.3597	1E-9		0.02282645	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57748368	57748369	rs259981	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	20q13.32	intergenic	rs259981-A	0.3597	1E-10		0.0243979	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57748588	57748589	rs73306888	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	20q13.32	ZNF831	rs73306888-A	0.14	4E-11	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57750477	57750478	rs79263055	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	20q13.32	ZNF831	rs79263055-A	0.12	4E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57750532	57750533	rs73306896	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	20q13.32	ZNF831	rs73306896-T	0.12	4E-19	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1025	chr20	57750555	57750556	rs259979	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	20q13.32	ZNF831	rs259979-T	0.146134	1E-8		1.06	[1.04-1.09]	NR [8126035] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	20q13.32	GNAS, EDN3, ZNF831	rs6015450-?	NR	3E-22				Affymetrix, Illumina [18800000] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	20q13.32	GNAS, EDN3, ZNF831	rs6015450-?		7E-37				Affymetrix, Illumina [18800000] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20q13.32	GNAS, EDN3	rs6015450-G	0.13	4E-13	(EA, initial)	0.802	[0.59-1.02] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	20q13.32	GNAS, EDN3	rs6015450-G	0.13	2E-15	(EA, initial)	0.536	[0.4-0.67] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	20q13.32	SLMO2, ZNF831	rs6015450-A		9E-6		0.383	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.32	SLMO2, ZNF831	rs6015450-A		7E-20		0.543	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.32	SLMO2, ZNF831	rs6015450-A		8E-6		0.177	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.32	SLMO2, ZNF831	rs6015450-A		3E-27		0.392	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	EDN3, GNAS	rs6015450-G	0.12	4E-23		0.896	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Hypertension	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	EDN3, GNAS	rs6015450-G	0.12	4E-14		0.11	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	20q13.32	EDN3, GNAS	rs6015450-G	0.12	6E-23		0.557	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20q13.32	EDN3, GNAS	rs6015450-G	0.07	2E-6	(Pulse Pressure)	0.352	[0.21-0.49] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1025	chr20	57751116	57751117	rs6015450	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	20q13.32	EDN3, GNAS	rs6015450-G	0.07	2E-12	(Mean Arterial Pressure)	0.521	[0.38-0.67] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1025	chr20	57755446	57755447	rs73618643	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	20q13.32	ZNF831	rs73618643-A	0.1128	4E-6		0.0436	[0.025-0.062] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1025	chr20	57758719	57758720	rs16982520	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Hypertension	30,822 British ancestry normal blood pressure individuals, 25,242 British ancestry elevated blood pressure individuals, 50,461 British ancestry stage 1 hypertension individuals, 75,286 British ancestry stage 2 hypertension individuals, 3,754 British ancestry hypertension crisis individuals	NA	20q13.32	ZNF831	rs16982520-?	NR	6E-15		0.0736275	NR unit decrease	Affymetrix [464137]	N
1025	chr20	57758719	57758720	rs16982520	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	20q13.32	ZNF831	rs16982520-G	0.131772976003447	1E-17		0.57718176	[0.45-0.71] unit increase	Illumina [247039]	N
1025	chr20	57758719	57758720	rs16982520	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	20q13.32	GS, EDN3	rs16982520-A	0.8659	4E-18		0.0443	unit decrease	Illumina [242296]	N
1025	chr20	57758719	57758720	rs16982520	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Hypertension	29,136 European ancestry individuals	34,433 European ancestry individuals	20q13.32	EDN3, ZNF831	rs16982520-A	0.88	2E-7		0.13	[0.09-0.17] log odds decrease	Affymetrix, Illumina [2533153] (imputed)	N
1025	chr20	57770813	57770814	rs1011559036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32	ZNF831	rs1011559036-A	1.10000000000055E-4	5E-16		1.3160472	[1-1.63] unit increase	Affymetrix [93095623] (imputed)	N
1025	chr20	57785168	57785169	rs574551002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	ZNF831	rs574551002-G	5.0E-4	1E-9		0.5933352	[0.4-0.78] unit increase	Affymetrix [~ 2500000] (imputed)	N
1025	chr20	57790435	57790436	rs12625057	19875103	Aberg K	2009-10-27	Biol Psychiatry	Genomewide association study of movement-related adverse antipsychotic effects.	Response to antipsychotic therapy (extrapyramidal side effects)	421 European ancestry schizophrenia cases, 214 African American schizophrenia cases, 103 schizophrenia cases	NA	20q13.32	ZNF831	rs12625057-?	NR	7E-6	(SAS)			Affymetrix [492000]	N
1026	chr20	57816059	57816060	rs259967	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.32	ZNF831	rs259967-C	0.52822	2E-21		0.021425232	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr20	57819235	57819235	rs576111261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.32	ZNF831	rs576111261-GA	0.509731	3E-20		0.020589793	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr20	57824308	57824309	rs259964	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q13.32	ZNF831	rs259964-?		3E-9				Illumina [9725440] (imputed)	N
1026	chr20	57824308	57824309	rs259964	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	20q13.32	ZNF831	rs259964-?		4E-7				Illumina [9560910] (imputed)	N
1026	chr20	57824308	57824309	rs259964	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.32	ZNF831	rs259964-?	NR	4E-12	(subset analysis)			Illumina [130052]	N
1026	chr20	57824308	57824309	rs259964	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.32	NR	rs259964-A	0.4586	4E-6	(EA)	1.0585915	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1026	chr20	57824308	57824309	rs259964	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.32	NR	rs259964-A	0.4586	7E-12	(EA)	1.0697858	[1.05-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1026	chr20	57824308	57824309	rs259964	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.32	NR	rs259964-A	0.4586	2E-9	(EA)	1.07394	[1.05-1.1]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1026	chr20	57824308	57824309	rs259964	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.32	ZNF831, CTSZ	rs259964-A	0.464	1E-12		1.085	[1.054-1.116]	Affymetrix, Illumina [1230000] (imputed)	N
1026	chr20	57824900	57824901	rs259963	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	20q13.32		rs259963-A	0.455	8E-13				Affymetrix [10369434] (imputed)	N
1026	chr20	57826161	57826162	rs259960	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	20q13.32	ZNF831	rs259960-A	0.4838	2E-12		1.089	NR	Affymetrix [9154080] (imputed)	N
1026	chr20	57827212	57827213	rs425881	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	20q13.32		rs425881-G	0.808	1E-10				Affymetrix [10369434] (imputed)	N
1026	chr20	57828582	57828583	rs259958	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	20q13.32		rs259958-C	0.456	1E-14				Affymetrix [10369434] (imputed)	N
1026	chr20	57828582	57828583	rs259958	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.32	ZNF831	rs259958-A	0.54483	4E-17		0.018988643	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1026	chr20	57841685	57841686	rs1036464	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	20q13.32	ZNF831	rs1036464-?	NR	4E-13		1.0636035	NR	Affymetrix [9154080] (imputed)	N
1026	chr20	57843357	57843358	rs6123874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	20q13.32		rs6123874-?	NR	1E-63				NR [~ 8900000] (imputed)	N
1026	chr20	57862986	57862987	rs77124424	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs77124424-C	0.004	3E-24		0.3021058	[0.24-0.36] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr20	57866841	57866842	rs2043671	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	20q13.32	intergenic	rs2043671-T	0.0176	2E-113		0.3133482	[0.29-0.34] unit increase	Affymetrix [~ 2500000] (imputed)	N
1026	chr20	57908467	57908468	rs138005219	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	20q13.32	NR	rs138005219-?	NR	4E-6		15.878	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1027	chr20	57952194	57952195	rs73620745	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	20q13.32	NR	rs73620745-G	NR	6E-6	(GEE model)	1.2914	[0.73-1.85] unit decrease	NR [NR] (imputed)	N
1027	chr20	57959637	57959638	rs111154639	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	20q13.32		rs111154639-?	NR	9E-7		0.796292		NR [NR] (imputed)	N
1027	chr20	57991999	57992000	rs187989	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.32	NR	rs187989-A	0.106	7E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
1027	chr20	58058542	58058543	rs35183041	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.32		rs35183041-A	1.48999999999955E-4	4E-12		0.7411147	[0.53-0.95] unit increase	Affymetrix [93095623] (imputed)	N
1027	chr20	58063253	58063254	rs384667	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.32	EDN3	rs384667-?	NR	2E-7	(citrate)	0.19358234	[0.12-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1028	chr20	58080450	58080451	rs6070821	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.32	EDN3	rs6070821-?	NR	8E-6	(TAG 56:4)	1.1091783	[0.62-1.6] unit increase	Affymetrix [at least 2500000] (imputed)	N
1028	chr20	58177614	58177615	rs6026990	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	20q13.32	intergenic	rs6026990-?	0.086	6E-7	(CHAQ , EA, RF-)	0.63	[NR] unit increase	Illumina [534053]	N
1028	chr20	58187374	58187375	rs2145263	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.32	PHACTR3	rs2145263-A	NR	3E-8		0.032002885	[0.021-0.043] unit decrease	Affymetrix [NR]	N
1029	chr20	58199217	58199218	rs6027005	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.32	PHACTR3	rs6027005-T	NR	1E-9		0.04527022	[0.031-0.06] unit decrease	Affymetrix [NR]	N
1029	chr20	58214636	58214637	rs911149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.32		rs911149-T	0.2357	4E-8		0.0091	[0.0058-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr20	58219762	58219763	rs117431198	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.32	PHACTR3	rs117431198-T	NR	4E-8		5.512	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1029	chr20	58219763	58219764	rs6123924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.32		rs6123924-A	0.8445	3E-11		0.0129	[0.0092-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1029	chr20	58219763	58219764	rs6123924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.32	Intergenic	rs6123924-A	0.8445	7E-13	(MTAG)	0.013	[0.0095-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr20	58219763	58219764	rs6123924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.32	Intergenic	rs6123924-A	0.8454	2E-11	(MTAG)	0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr20	58232735	58232736	rs2145265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20q13.32		rs2145265-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1029	chr20	58232735	58232736	rs2145265	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.32	Intergenic	rs2145265-T	0.8433	3E-9	(MTAG)	0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1029	chr20	58232735	58232736	rs2145265	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.32	PHACTR3	rs2145265-T	NR	8E-10		0.025449242	[0.017-0.034] unit increase	Affymetrix [NR]	N
1029	chr20	58235647	58235648	rs6015543	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	20q13.32		rs6015543-?	NR	2E-8				NR [7857346] (imputed)	N
1029	chr20	58235647	58235648	rs6015543	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	20q13.32	PHACTR3	rs6015543-T	NR	2E-9		0.041450437	[0.028-0.055] unit increase	Affymetrix [NR]	N
1029	chr20	58252406	58252407	rs6100546	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	20q13.32		rs6100546-T	NR	3E-8		0.94		Illumina [NR] (imputed)	N
1029	chr20	58253437	58253438	rs7266699	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q13.32	NR	rs7266699-C	NR	4E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1029	chr20	58253503	58253504	rs7273691	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	20q13.32	PHACTR3	rs7273691-T	NR	8E-6	(EA)	1.0624	[1.04-1.09]	Illumina [6627481] (imputed)	N
1029	chr20	58253503	58253504	rs7273691	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	20q13.32	PHACTR3	rs7273691-T	NR	3E-6		1.061	[1.04-1.09]	Illumina [6627481] (imputed)	N
1029	chr20	58253503	58253504	rs7273691	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	20q13.32	intergenic	rs7273691-T	NR	8E-8		1.069	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1029	chr20	58268518	58268519	rs843818	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	20q13.32	PHACTR3	rs843818-A	0.06	3E-6		1.64		Illumina [8974355] (imputed)	N
1029	chr20	58309059	58309060	rs1182466	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C15:0+C17:0)	6,016 European ancestry individuals	NA	20q13.33	NR	rs1182466-?	NR	5E-6		0.0122	[0.0069-0.0175] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1030	chr20	58354387	58354388	rs6070941	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q13.33	PHACTR3	rs6070941-?		2E-10				Affymetrix, Illumina [NR] (imputed)	N
1030	chr20	58392146	58392147	rs6027138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs6027138-A	0.7917	2E-8	(MTAG)	0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1030	chr20	58393001	58393002	rs1182531	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	20q13.33	PHACTR3	rs1182531-C	0.779	7E-9				NR [509413]	N
1030	chr20	58393544	58393545	rs1182532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs1182532-A	0.1581	4E-9	(MTAG)	0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1030	chr20	58426199	58426200	rs142497318	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20q13.33	RNU7-141P	rs142497318-A	0.9929	3E-6		0.3157	[0.18-0.45] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1032	chr20	58625387	58625388	rs13043933	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs13043933-A	0.1246	5E-8	(MTAG)	0.0137	[0.0088-0.0186] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1032	chr20	58665656	58665657	rs577624	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	20q13.33		rs577624-A	NR	9E-6		1.23	[1.12-1.34]	Illumina [7105229] (imputed)	N
1032	chr20	58675674	58675675	rs3818252	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	20q13.33	C20orf197	rs3818252-?	NR	2E-6		2.22	1.60-3.10	Illumina [~ 18000000] (imputed)	N
1032	chr20	58681413	58681414	rs56738889	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Hippocampal volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	20q13.33	LOC729296	rs56738889-?		9E-6				Illumina [4322238] (imputed)	N
1033	chr20	58742573	58742574	rs16983616	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.33	NR	rs16983616-?	NR	9E-13				Affymetrix [NR]	N
1033	chr20	58757980	58757981	rs6027394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs6027394-A	0.6057	5E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr20	58757980	58757981	rs6027394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs6027394-A	0.5848	4E-9	(MTAG)	0.0079	[0.0054-0.0104] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1033	chr20	58799035	58799036	rs6100794	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	20q13.33	AX747739	rs6100794-?		5E-6	(SI)	0.63	[0.16-1.1] unit decrease	Illumina [693128]	N
1034	chr20	58883873	58883874	rs56363609	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	20q13.33		rs56363609-?	NR	3E-9				Illumina [1128286]	N
1034	chr20	58892519	58892520	rs17801257	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs17801257-A	0.1258	2E-9	(MTAG)	0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1034	chr20	58893815	58893816	rs6027504	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Chronic kidney disease (severe chronic kidney disease vs normal kidney function) in type 1 diabetes	907 European ancestry cases, 210 cases, 1,661 European ancestry controls, 357 controls	1,266 cases, 2,655 controls	20q13.33	NR	rs6027504-T	0.60	3E-6		1.21	[1.12-1.30]	Illumina [NR] (imputed)	N
1034	chr20	58894286	58894287	rs164926	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	20q13.33	Intergenic	rs164926-A	0.6583	4E-8	(MTAG)	0.0103	[0.0066-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1034	chr20	58894904	58894905	rs11700264	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs11700264-T	0.7567	1E-8	(MTAG)	0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1034	chr20	58895845	58895846	rs11698685	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q13.33	RP5-1043L13.1	rs11698685-G	0.68	1E-6	(ESRD)	1.27	[1.15-1.39]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1034	chr20	58896714	58896715	rs6027506	23028342	Sandholm N	2012-09-20	PLoS Genet	New susceptibility loci associated with kidney disease in type 1 diabetes.	Type 1 diabetes nephropathy	Up to 2,916 European ancestry Type 1 Diabetes cases with nephropathy, 3,315 European ancestry Type 1 Diabetes cases without nephropathy	Up to 1,493 European ancestry Type 1 Diabetes cases with nephropathy, 3,191 European ancestry Type 1 Diabetes cases without nephropathy	20q13.33	RP5-1043L13.1	rs6027506-A	0.63	5E-6	(ESRD vs. non-ESRD)	1.22	[1.12-1.32]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1034	chr20	58898208	58898209	rs6027511	22903471	Hibar DP	2012-08-18	Brain Imaging Behav	Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.	Lentiform nucleus volume	162 European ancestry Alzheimer's disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families	NA	20q13.33	intergenic	rs6027511-C	0.17	9E-6		122.24	[NR] unit decrease	Illumina [2380200] (imputed)	N
1034	chr20	58946488	58946489	rs55681231	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	20q13.33	AK309218	rs55681231-A		7E-7		0.3144	unit increase	Illumina [5767231] (imputed)	N
1035	chr20	58998650	58998651	rs35384758	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	20q13.33	intergenic	rs35384758-?	0.23640000000000005	4E-8		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1035	chr20	59007023	59007024	rs348838	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	20q13.33		rs348838-?	NR	5E-10				Illumina [1128286]	N
1035	chr20	59016766	59016767	rs181221928	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	20q13.33	Intergenic	rs181221928-?	NR	2E-6		8.56	[3.51-20.88]	Illumina [8600000] (imputed)	N
1035	chr20	59032096	59032097	rs348809	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	20q13.33		rs348809-A	0.348	1E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1036	chr20	59196513	59196514	rs73136013	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.33	intergenic	rs73136013-G	0.0125987150899502	8E-6	(G_Alloprevotella_HB)	1.16431	[0.65-1.68] unit increase	Illumina [7711310] (imputed)	N
1037	chr20	59263151	59263152	rs6027740	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	20q13.33		rs6027740-G	0.87	2E-8		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1037	chr20	59268709	59268710	rs6027755	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	20q13.33	intergenic	rs6027755-A	0.39	6E-6	(Fibrosis)	1.09	[NR] unit increase	Illumina [324623]	N
1037	chr20	59274640	59274641	rs1201914	31320941	Igarashi M	2019-07-05	Genes Nutr	Identification of the 12q24 locus associated with fish intake frequency by genome-wide meta-analysis in Japanese populations.	Fish intake frequency	12,603 Japanese ancestry individuals	NA	20q13.33	CDH26, CDH4	rs1201914-G	0.452	5E-7		0.117	[0.072-0.162] unit decrease	Illumina [296675]	N
1037	chr20	59278696	59278697	rs1201929	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	20q13.33	Intergenic	rs1201929-C	0.4645	2E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1037	chr20	59362983	59362984	rs73297683	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs73297683-G	0.01568	2E-9	(ACSM2A)	0.2869	NR unit increase	Illumina [1671387] (imputed)	N
1038	chr20	59422970	59422971	rs4812219	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	20q13.33	intergenic	rs4812219-?		7E-7	(overall survival)	3.27	[2.05-5.23]	Illumina [729737]	N
1038	chr20	59449365	59449366	rs8123347	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	20q13.33	intergenic	rs8123347-A	0.118	2E-7		1.076	[0.68-1.47] unit decrease	Illumina [621723]	N
1038	chr20	59457959	59457960	rs6093018	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	20q13.33		rs6093018-?	NR	5E-6		0.4810984	[0.28-0.69] unit increase	Illumina [9842460] (imputed)	N
1038	chr20	59488770	59488771	rs35510230	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.33	NR	rs35510230-?	NR	9E-8		5.34	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1039	chr20	59635607	59635608	rs6071467	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	TAF4	rs6071467-?	NR	6E-6	(TAG 48:0)	0.16533256	[0.094-0.237] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1040	chr20	59663567	59663568	rs1202138	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	20q13.33	NR	rs1202138-G		8E-6		0.4782	[0.27-0.69] SD units decrease	NR [10700000] (imputed)	N
1040	chr20	59686221	59686222	rs77117355	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	20q13.33		rs77117355-?	NR	6E-6		0.4584662	[0.26-0.65] unit increase	Illumina [9901720] (imputed)	N
1040	chr20	59723156	59723157	rs6093063	32757270	Ruiz-Pinto S	2020-08-05	Clin Pharmacol Ther	Regulatory CDH4 genetic variants associate with risk to develop capecitabine-induced hand-foot syndrome.	Capecitabine-induced hand-foot syndrome in breast or colorectal cancer	88 cases, 78 controls	24 cases, 61 controls	20q13.33	NR	rs6093063-?	0.17	1E-7		2.16	[1.62-2.88]	Illumina [520052]	N
1040	chr20	59732321	59732322	rs6129058	32757270	Ruiz-Pinto S	2020-08-05	Clin Pharmacol Ther	Regulatory CDH4 genetic variants associate with risk to develop capecitabine-induced hand-foot syndrome.	Capecitabine-induced hand-foot syndrome in breast or colorectal cancer	88 cases, 78 controls	24 cases, 61 controls	20q13.33	NR	rs6129058-?	0.19	1E-8		2.4	[1.78-3.25]	Illumina [520052]	N
1040	chr20	59753354	59753355	rs817687	32759990	Carlson JC	2020-08-05	J Hum Genet	Genome-wide association studies in Samoans give insight into the genetic architecture of fasting serum lipid levels.	HDL cholesterol levels	2,849 Samoan (founder/genetic isolate) individuals	1,798 Samoan and American Samoan (founder/genetic isolate) individuals	20q13.33	CDH4	rs817687-C	0.986	9E-6		4.72	NR z score decrease	Affymetrix [659492]	N
1040	chr20	59765294	59765295	rs860148	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	20q13.33	CDH4	rs860148-C		8E-6		0.04	[0.02-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
1041	chr20	59777490	59777491	rs4812279	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.33	CDH4	rs4812279-A	NR	4E-8		5.478	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1041	chr20	59785125	59785126	rs16984837	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20q13.33	CDH4	rs16984837-?	NR	1E-7	(male)	3.4	[2.10-5.54]	Illumina [NR] (imputed)	N
1041	chr20	59786366	59786367	rs2426986	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20q13.33	CDH4	rs2426986-?	NR	1E-7	(male)	3.4	[2.10-5.52]	Illumina [NR] (imputed)	N
1041	chr20	59802657	59802658	rs6101273	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs none or mild)	136 Finnish ancestry severe erosion cases, 1011 Finnish ancestry mild or no erosion controls	NA	20q13.33	CDH4	rs6101273-?	NR	5E-6				Illumina [NR] (imputed)	N
1041	chr20	59802657	59802658	rs6101273	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20q13.33	CDH4	rs6101273-?	NR	9E-6		2.5	[1.56-3.57]	Illumina [NR] (imputed)	N
1041	chr20	59802657	59802658	rs6101273	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	20q13.33	CDH4	rs6101273-?	NR	3E-8	(male)	3.333333	[2.13-6.25]	Illumina [NR] (imputed)	N
1041	chr20	59815019	59815020	rs6124077	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.33	CDH4	rs6124077-A	NR	4E-8		5.491	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1041	chr20	59827230	59827231	rs143502921	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	20q13.33	NR	rs143502921-C	0.1807	1E-7		0.009	[0.0057-0.0123] unit increase	NR [7666894] (imputed)	N
1041	chr20	59832790	59832791	rs6065080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.33		rs6065080-T	0.3589	7E-19		0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1041	chr20	59832790	59832791	rs6065080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs6065080-T	0.3589	3E-20	(MTAG)	0.0126	[0.0099-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr20	59832790	59832791	rs6065080	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	20q13.33	NR	rs6065080-T	0.3599	1E-8		0.013207946	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1041	chr20	59838098	59838099	rs6028083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs6028083-T	0.3812	2E-12	(MTAG)	0.0119	[0.0086-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr20	59838098	59838099	rs6028083	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	20q13.33		rs6028083-T	0.3838	1E-18	(conditional-joint)	0.0128	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1041	chr20	59838216	59838217	rs6028085	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	20q13.33	CDH4	rs6028085-T	0.2593	1E-8		0.013043968	[0.0086-0.0175] unit increase	Affymetrix [up to 18485882] (imputed)	N
1041	chr20	59838216	59838217	rs6028085	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	20q13.33	Intergenic	rs6028085-T	0.7388	2E-8	(MTAG)	0.0146	[0.0095-0.0197] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1041	chr20	59853937	59853938	rs1970546	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Volumetric brain MRI	705 European ancestry individuals	NA	20q13.33	CDH4	rs1970546-?	NR	4E-8	(ATCBV)			Affymetrix [70897]	N
1041	chr20	59856464	59856465	rs6028090	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	20q13.33	CDH4	rs6028090-A	0.448	2E-10		0.013018763	[0.009-0.017] unit increase	Affymetrix [up to 18485882] (imputed)	N
1041	chr20	59869532	59869533	rs6071573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	20q13.33		rs6071573-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1041	chr20	59879148	59879149	rs2427062	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	20q13.33	CDH4	rs2427062-?	NR	4E-6		0.116	[0.049-0.183] unit decrease	Illumina [at least 13000000] (imputed)	N
1041	chr20	59896410	59896411	rs2427079	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	20q13.33		rs2427079-C	NR	4E-6		4.609631	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1042	chr20	59908262	59908263	rs150734585	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	20q13.33	CDH4	rs150734585-G	0.01	7E-7	(EA)	0.679	[0.41-0.94] unit increase	Illumina [~ 9000000] (imputed)	N
1042	chr20	59928236	59928237	rs4468878	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	20q13.33	AL365229.1	rs4468878-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1042	chr20	59937458	59937459	rs28579792	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	20q13.33	NR	rs28579792-T	NR	3E-6		0.091	[0.052-0.13] unit decrease	Illumina [6319684] (imputed)	N
1042	chr20	59947043	59947044	rs4925189	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	20q13.33	CDH4	rs4925189-G	NR	6E-7	(AD)			Illumina [498205]	N
1042	chr20	59956626	59956627	rs73308697	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	20q13.33	CDH4	rs73308697-T	0.0118688033679827	2E-6	(F_Enterococcaceae_HB)	1.33613	[0.79-1.88] unit increase	Illumina [7711310] (imputed)	N
1042	chr20	60004167	60004168	rs1892312	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	20q13.33	CDH4	rs1892312-G	NR	9E-6	(sleep offset, weekdays)	0.3914	[0.22-0.56] unit decrease	Affymetrix [7141204] (imputed)	N
1042	chr20	60008745	60008746	rs530163272	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	20q13.33	CDH4	rs530163272-A	0.0045	6E-6		0.359	[0.2-0.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1042	chr20	60022068	60022069	rs6061441	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.33	NR	rs6061441-?	NR	2E-6		4.803	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1043	chr20	60055823	60055824	rs117586769	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	20q13.33		rs117586769-?	NR	1E-5		0.57	[0.32-0.82] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1043	chr20	60106872	60106873	rs116896199	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	20q13.33	NR	rs116896199-?	NR	5E-6				NR [up to 8466825] (imputed)	N
1043	chr20	60108359	60108360	rs4925251	34523824	Lakshman Kumar P	2021-09-15	J Cachexia Sarcopenia Muscle	Genetic variation in genes regulating skeletal muscle regeneration and tissue remodelling associated with weight loss in chronic obstructive pulmonary disease.	Weight loss in chronic obstructive pulmonary disease	401 African American individuals	138 African American individuals	20q13.33		rs4925251-T	NR	2E-6		3.0	[1.9-4.6]	Illumina [7629332] (imputed)	N
1043	chr20	60129941	60129941	rs11472677	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	20q13.33	NR	rs11472677-?	NR	7E-6	(AA)	0.261617	[NR] unit increase	Affymetrix [49134253] (imputed)	N
1043	chr20	60142985	60142986	rs2252187	27629089	Sailer A	2016-09-14	Neurology	A genome-wide association study in multiple system atrophy.	Multiple system atrophy	918 European ancestry cases, 3,864 European ancestry controls	NA	20q13.33	CDH4	rs2252187-A	0.23	4E-6		1.3513513		Illumina [4903804] (imputed)	N
1044	chr20	60212493	60212494	rs2024714	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	20q13.33	CDH4	rs2024714-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
1044	chr20	60243410	60243411	rs944260	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	20q13.33	CDH4	rs944260-?	0.24	2E-6	(Additive)	1.1	[1.06-1.14]	Affymetrix [319222]	N
1044	chr20	60247556	60247557	rs117546358	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	20q13.33		rs117546358-A	NR	7E-7		4.5785	[2.81-6.34] unit increase	Illumina [NR] (imputed)	N
1044	chr20	60258850	60258851	rs16985437	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	20q13.33	CDH4	rs16985437-A	0.0092	3E-6		0.4569	[0.27-0.65] unit increase	Illumina [2500000] (imputed)	N
1044	chr20	60265852	60265853	rs16985452	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	20q13.33	NR	rs16985452-T	0.9675	3E-6	(Cis/trans-18:2, EA)	0.0137	[0.008-0.0194] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1045	chr20	60293562	60293563	rs16985493	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	20q13.33	intergenic	rs16985493-A	0.04	4E-6		1.37	[1.20-1.57]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1045	chr20	60381798	60381799	rs4925295	23279374	Athanasiadis G	2013-01-02	J Thromb Haemost	Genetic determinants of plasma ??-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.	&beta;2-Glycoprotein I (&beta;2-GPI) plasma levels	306 European ancestry individuals	NA	20q13.33	CDH4	rs4925295-A	0.16	2E-6		0.52	unit decrease	Illumina [283437]	N
1046	chr20	60429117	60429118	rs80166412	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CDH4	rs80166412-?	NR	4E-8		1.23698	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1046	chr20	60443250	60443251	rs78897171	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	20q13.33	NR	rs78897171-A	NR	8E-7	(Females)	0.091	[0.054-0.128] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1046	chr20	60443250	60443251	rs78897171	26977737	Cade BE	2016-03-15	Am J Respir Crit Care Med	Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans.	Obstructive sleep apnea trait (average respiratory event duration)	10,238 Hispanic/Latin American ancestry individuals	214 Asian ancestry individuals, 1,183 African American ancestry individuals, 5,638 European ancestry individuals	20q13.33	CDH4	rs78897171-A	0.023	1E-7	(Hispanic, females)	0.108	[0.069-0.147] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1046	chr20	60463764	60463765	rs62204977	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs62204977-C	0.971799	2E-8		0.0344758	[0.022-0.047] unit decrease	NR [NR]	N
1046	chr20	60474454	60474455	rs1776249	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	20q13.33	CDH4	rs1776249-C	0.96	2E-6	(adjusted for severity)	2.173913	[1.86-2.49]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1046	chr20	60505875	60505876	rs872834	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	TAF4	rs872834-?	NR	1E-6	(cotinine)	0.69700176	[0.42-0.98] unit increase	Affymetrix [at least 2500000] (imputed)	N
1046	chr20	60508181	60508182	rs6061910	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	CDH4	rs6061910-A	0.063	4E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1046	chr20	60508181	60508182	rs6061910	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	CDH4	rs6061910-A	0.063	1E-7	(IGFBP-3 )	0.04	[NR] ng/mL increase	Illumina [899892]	N
1046	chr20	60509878	60509879	rs4925318	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unassigned genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	20q13.33	CDH4	rs4925318-G	0.50	9E-6	(male)	0.0738	[0.041-0.106] unit decrease	Illumina [6380737] (imputed)	N
1046	chr20	60514223	60514224	rs4925325	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	CDH4	rs4925325-A	0.381	7E-6	(LDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1046	chr20	60529962	60529963	rs114580352	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	20q13.33	TAF4	rs114580352-A	0.0094	2E-8		0.05121735	[0.033-0.069] unit decrease	Affymetrix [up to 29454346] (imputed)	N
1046	chr20	60529962	60529963	rs114580352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.33		rs114580352-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1046	chr20	60538651	60538652	rs6089573	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	20q13.33	NR	rs6089573-?	NR	4E-6		1.2186	[1.13-1.3]	Illumina [NR] (imputed)	N
1046	chr20	60547734	60547735	rs185738008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	20q13.33		rs185738008-C	NR	8E-34		0.1847	[0.15-0.21] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1046	chr20	60552128	60552129	rs112468262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.33	TAF4	rs112468262-G	0.0996050000000001	9E-12		0.025793875	[0.018-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr20	60564085	60564086	rs6089584	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	20q13.33	TAF4	rs6089584-C	0.662	4E-9	(Japanese)	0.022	[0.014-0.03] unit decrease	Illumina [6108953] (imputed)	N
1047	chr20	60576194	60576195	rs17750066	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	20q13.33	Intergenic	rs17750066-?		9E-6		58.5	[32.63-84.37] unit increase	Illumina [~ 10000000] (imputed)	N
1047	chr20	60577203	60577204	rs28382096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs28382096-C	0.02613	9E-9	(NARS)	0.04111	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr20	60577203	60577204	rs28382096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs28382096-C	0.02613	5E-9	(SFPQ)	0.02874	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr20	60577203	60577204	rs28382096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs28382096-C	0.02613	5E-9	(PARP1)	0.01156	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr20	60577203	60577204	rs28382096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs28382096-C	0.02613	2E-9	(PABPC1)	0.1867	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr20	60577203	60577204	rs28382096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs28382096-C	0.02613	2E-8	(VAPA)	0.03556	NR unit increase	Illumina [1671387] (imputed)	N
1047	chr20	60586474	60586475	rs6061952	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	CDH4	rs6061952-?	NR	9E-7	(LPE 22:6)	0.55470264	[0.33-0.78] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1047	chr20	60586474	60586475	rs6061952	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	CDH4	rs6061952-?	NR	5E-7	(LPC 18:1)	0.57148373	[0.35-0.79] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1047	chr20	60586474	60586475	rs6061952	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	CDH4	rs6061952-?	NR	1E-6	(LPC 18:0)	0.5464657	[0.33-0.77] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1047	chr20	60588048	60588049	rs2273991	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	20q13.33	NR	rs2273991-G	0.897389	3E-9		0.0128192	[0.0087-0.017] unit increase	Affymetrix [16578495] (imputed)	N
1047	chr20	60595035	60595036	rs189152021	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.33	TAF4	rs189152021-T	0.00586299999999995	3E-11		0.103072345	[0.073-0.133] unit increase	Affymetrix [93095623] (imputed)	N
1047	chr20	60597622	60597623	rs1886008	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs1886008-T	0.887629	4E-9		0.0203264	[0.014-0.027] unit increase	NR [NR]	N
1047	chr20	60627033	60627034	rs4925335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs4925335-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1047	chr20	60647834	60647835	rs181706054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q13.33		rs181706054-C	NR	1E-9		0.0943	[0.064-0.125] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1047	chr20	60648875	60648876	rs62204326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs62204326-T	NR	2E-9		0.0225	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1047	chr20	60648875	60648876	rs62204326	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs62204326-T	NR	2E-9		0.0227	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1047	chr20	60654073	60654074	rs6061420	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	20q13.33	TAF4	rs6061420-G	0.07	2E-6		6.014	[3.52-8.51] unit decrease	Illumina [NR] (imputed)	N
1047	chr20	60680277	60680278	rs1535669	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.33		rs1535669-G	0.800673	4E-13		0.020353725	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1048	chr20	60694076	60694077	rs6121900	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	20q13.33	LSM14B	rs6121900-G	0.155	7E-6		0.025	[0.015-0.035] unit increase	Affymetrix [~ 10446505] (imputed)	N
1048	chr20	60707039	60707040	rs2038687	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q13.33	LSM14B	rs2038687-G	0.86	2E-9		5.99	z-score increase	Affymetrix [4311822] (imputed)	N
1048	chr20	60722331	60722332	rs2427247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.33		rs2427247-C	NR	4E-12		0.0204	[0.015-0.026] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1048	chr20	60728037	60728038	rs2021309	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.33	SS18L1	rs2021309-T	0.13942	3E-13		0.0024644	[0.0018-0.0031] unit decrease	Affymetrix [13995440] (imputed)	N
1048	chr20	60740667	60740668	rs115725863	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs115725863-C	0.0122	3E-8	(FXN)	0.006778	NR unit decrease	Illumina [1671387] (imputed)	N
1048	chr20	60768909	60768910	rs76232775	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	20q13.33	MTG2	rs76232775-A	0.03	2E-6		4.44	[2.408-8.186]	Illumina [7585874] (imputed)	N
1048	chr20	60775931	60775932	rs1972	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MTG2	rs1972-?	NR	4E-8	(female)	1.34301	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1048	chr20	60776353	60776354	rs73611722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs73611722-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1048	chr20	60811520	60811521	rs4142484	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	20q13.33	NR	rs4142484-G	0.48	2E-10				NR [9056863] (imputed)	N
1049	chr20	60821179	60821180	rs2380129	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.33		rs2380129-T	0.49	6E-10		6.2	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr20	60821179	60821180	rs2380129	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	20q13.33		rs2380129-T	0.49	6E-11		6.55	z score increase	Affymetrix [9061022] (imputed)	N
1049	chr20	60826160	60826161	rs34259616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.33	OSBPL2	rs34259616-A	0.4691	5E-19		0.019860089	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr20	60826160	60826161	rs34259616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.33	OSBPL2	rs34259616-A	0.469115	2E-17		0.018880071	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr20	60826160	60826161	rs34259616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	20q13.33	OSBPL2	rs34259616-A	0.469126	1E-17		0.01897158	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr20	60826160	60826161	rs34259616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	20q13.33	OSBPL2	rs34259616-A	0.469144	1E-16		0.01840697	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr20	60826803	60826804	rs6143006	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	20q13.33	OSBPL2	rs6143006-T	0.542231	2E-8		0.0434	[0.028-0.059] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1049	chr20	60826803	60826804	rs6143006	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	20q13.33	OSBPL2	rs6143006-T	0.542231	8E-6		0.0305	[0.017-0.044] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
1049	chr20	60841328	60841329	rs6143009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6143009-C	0.46642	7E-12				Affymetrix, Illumina [23472807] (imputed)	N
1049	chr20	60858469	60858470	rs61255017	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	20q13.33	OSBPL2	rs61255017-C	NR	4E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1049	chr20	60858757	60858758	rs35636653	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.33	OSBPL2	rs35636653-T	0.3369	4E-13		0.0022	[0.0016-0.0028] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1049	chr20	60865814	60865815	rs13044225	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	20q13.33	OSBPL2	rs13044225-A	0.56	9E-9		0.94677	[0.93-0.97]	Affymetrix, Illumina [7549318] (imputed)	N
1049	chr20	60865814	60865815	rs13044225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.33	NR	rs13044225-A	0.531849	2E-10		0.012228	[0.0085-0.016] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1049	chr20	60876717	60876718	rs2018659	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.33	NR	rs2018659-C	0.463258	1E-11		0.013111	[0.0093-0.0169] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1049	chr20	60879828	60879829	rs7264166	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	20q13.33		rs7264166-?	NR	3E-8				NR [9705931] (imputed)	N
1049	chr20	60890808	60890809	rs147619472	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	20q13.33	NR	rs147619472-?	NR	4E-6	(Japanese)	0.6915	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1049	chr20	60892115	60892116	rs2236521	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.33	LAMA5	rs2236521-A	0.55	3E-12		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1049	chr20	60892115	60892116	rs2236521	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	20q13.33	LAMA5	rs2236521-A	0.16	6E-6		1.37		Affymetrix [at least 730985] (imputed)	N
1049	chr20	60901761	60901762	rs11699758	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LAMA1;LAMB1;LAMC1	5,362 Icelandic ancestry individuals	NA	20q13.33		rs11699758-T	0.03686	7E-23		0.485005	[0.39-0.58] unit increase	Illumina [7506463] (imputed)	N
1049	chr20	60901761	60901762	rs11699758	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q13.33		rs11699758-T	0.0339	6E-10		0.3788197	[0.26-0.5] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1049	chr20	60901761	60901762	rs11699758	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	20q13.33		rs11699758-T	0.0339	7E-11		0.28241304	[0.2-0.37] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1049	chr20	60903040	60903041	rs80097864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	20q13.33		rs80097864-A	0.009911	2E-8		0.0939494	[0.061-0.127] unit decrease	Illumina [13478778] (imputed)	N
1049	chr20	60906054	60906055	rs73613564	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	20q13.33	MIR4758	rs73613564-C	0.351767	1E-10		0.00263057	[0.0018-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1049	chr20	60916095	60916111	rs143213207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.33	LAMA5	rs143213207-A	0.704513	3E-12		0.017481837	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1049	chr20	60920699	60920700	rs6143035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs6143035-C	NR	3E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1049	chr20	60921043	60921044	rs4925386	20972440	Houlston RS	2010-10-24	Nat Genet	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	20q13.33	LAMA5	rs4925386-C	NR	2E-10		1.08	[1.05-1.10]	Illumina [up to 550000] (imputed)	N
1049	chr20	60921642	60921643	rs4925229	32599975	Bae JS	2020-06-30	Cancer Res Treat	Genome-Wide Association Study for the Identification of Novel Genetic Variants Associated with the Risk of Neuroblastoma in Korean Children.	Neuroblastoma (pediatric)	296 Korean ancestry child cases, 1,000 Korean ancestry adult controls	NA	20q13.33	LAMA5	rs4925229-?		8E-14		3.9	[2.7-5.6]	Illumina [NR] (imputed)	N
1049	chr20	60930333	60930334	rs688157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.33	RP11-157P1.5	rs688157-T	0.665019	4E-12		0.016466593	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1049	chr20	60932413	60932414	rs1741640	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.33	NR	rs1741640-C	NR	2E-28		1.16	[1.13-1.20]	Affymetrix, Illumina [> 10000000] (imputed)	N
1049	chr20	60932413	60932414	rs1741640	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.33	LAMA5, RPS21	rs1741640-C	0.7652	1E-26		1.12	[1.10-1.15]	Affymetrix, Illumina [16900397] (imputed)	N
1049	chr20	60932424	60932425	rs62199218	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.33	LAMA5	rs62199218-A	0.039	1E-31	(Laminin, LAMA1.LAMB1.LAMC1.2728.62.2)	0.75	[0.63-0.87] unit increase	Affymetrix [10572788] (imputed)	N
1049	chr20	60936650	60936651	rs508216	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LAMA5	rs508216-?	NR	3E-8	(female)	1.31462	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1049	chr20	60937596	60937597	rs477859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	20q13.33		rs477859-G	NR	3E-26		0.1266	[0.1-0.15] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
1049	chr20	60944737	60944740	rs11468196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q13.33		rs11468196-G	NR	4E-11		0.0122	[0.0087-0.0157] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1050	chr20	60948752	60948753	rs60922440	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	20q13.33	intergenic	rs60922440-T	NR	9E-6		0.120169	[0.067-0.173] unit increase	Illumina [7433384] (imputed)	N
1050	chr20	60956916	60956917	rs6061231	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	20q13.33	RPS21	rs6061231-C	0.91	8E-11		1.18	[1.13-1.25]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1050	chr20	60960143	60960144	rs13036495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs13036495-?	NR	8E-17				NR [~ 8900000] (imputed)	N
1050	chr20	60969450	60969451	rs2427308	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	20q13.33	NR	rs2427308-C	0.766	2E-13	(EA)	1.1235955	[1.09-1.16]	Affymetrix, Illumina [12931465] (imputed)	N
1050	chr20	60969450	60969451	rs2427308	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	20q13.33	CABLES2	rs2427308-C	0.912	2E-6		1.189	[1.106-1.278]	Illumina [6774630] (imputed)	N
1050	chr20	60969450	60969451	rs2427308	25990418	Al-Tassan NA	2015-05-20	Sci Rep	A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.	Colorectal cancer	7,577 European ancestry cases, 9,979 European ancestry controls	NA	20q13.33	LAMA5	rs2427308-C	0.78	3E-11		1.19	[NR]	Affymetrix, Illumina [~ 10000000] (imputed)	N
1050	chr20	60969450	60969451	rs2427308	24737748	Whiffin N	2014-04-15	Hum Mol Genet	Identification of susceptibility loci for colorectal cancer in a genome-wide meta-analysis.	Colorectal cancer	5,626 European ancestry cases, 7,817 European ancestry controls	14,037 European ancestry cases, 15,937 European ancestry controls	20q13.33	LAMA5	rs2427308-C	0.78	3E-11		1.235	[NR]	Illumina [NR] (imputed)	N
1050	chr20	60970674	60970675	rs2427313	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	20q13.33		rs2427313-A	NR	1E-9		0.1003	[0.068-0.133] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1050	chr20	60974406	60974407	rs149406809	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	20q13.33	CABLES2	rs149406809-?	NR	8E-6		1.018	[0.45-1.58] unit decrease	Illumina [at least 13000000] (imputed)	N
1050	chr20	60978523	60978524	rs6061235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q13.33		rs6061235-G	NR	2E-8		0.0167	[0.011-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1050	chr20	60985491	60985492	rs115453770	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	20q13.33	C20orf151	rs115453770-?	NR	5E-6		0.216	[0.098-0.334] unit decrease	Illumina [at least 13000000] (imputed)	N
1050	chr20	61001061	61001073	rs139135938	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.33	NR	rs139135938-TGGCAGTGGCAGC	NR	7E-9		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1050	chr20	61012279	61012280	rs911080	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	20q13.33	NR	rs911080-?		8E-7	(GC)	0.2948	[NR] unit increase	Illumina [NR]	N
1050	chr20	61015610	61015611	rs2427345	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	20q13.33	NR	rs2427345-C	0.62	3E-8		1.05	[1.03-1.06]	Illumina [20370935] (imputed)	N
1050	chr20	61015610	61015611	rs2427345	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	20q13.33	Intergenic	rs2427345-T	0.593	3E-6		0.008	unit increase	Illumina [NR] (imputed)	N
1050	chr20	61015610	61015611	rs2427345	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	20q13.33	GTPBP5, HRH3, MIR1-1, MIR133A2, MIR4758, OSBPL2, RPS21, LAMA5, ADRM1, C20orf15, C20orf151, C20orf166, C20orf166-AS1, CABLES2, GATA5	rs2427345-G	0.63	4E-8		1.06	[1.03-1.1]	Illumina [~ 2600000] (imputed)	N
1050	chr20	61022350	61022351	rs6089229	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	20q13.33	intergenic	rs6089229-A		1E-13		0.018	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.33		rs2379120-T	NR	9E-11		0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.33		rs2379120-T	NR	3E-12		0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.33		rs2379120-T	NR	8E-12		0.0127	[0.009-0.0164] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.33		rs2379120-T	0.71043	5E-9		0.014624638	[0.0097-0.0195] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.33		rs2379120-T	0.710439	3E-11		0.01666883	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.33		rs2379120-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1050	chr20	61030579	61030580	rs2379120	30073298	Schellevis RL	2018-08-02	JAMA Ophthalmol	Role of the Complement System in Chronic Central Serous Chorioretinopathy: A Genome-Wide Association Study.	Chronic central serous retinopathy	521 European ancestry cases, 3,577 European ancestry controls		20q13.33	GATA5	rs2379120-?	NR	7E-7		1.4925373	[1.27-1.75]	Illumina [11526719] (imputed)	N
1050	chr20	61031847	61031848	rs6089381	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.33		rs6089381-C	0.9279604	4E-15		0.03412228	[0.026-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1050	chr20	61031847	61031848	rs6089381	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6089381-C	0.910802	1E-13				Affymetrix, Illumina [24332387] (imputed)	N
1050	chr20	61033689	61033690	rs6121604	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6121604-C	0.921161	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
1050	chr20	61033705	61033706	rs74874116	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	20q13.33		rs74874116-T	0.028	3E-7		1.74	[1.41-2.15]	Illumina [9962324] (imputed)	N
1050	chr20	61033891	61033892	rs6061548	31872073	Hosoda Y	2019-12-12	Commun Biol	Genome-wide association analyses identify two susceptibility loci for pachychoroid disease central serous chorioretinopathy.	Central serous retinopathy	610 Japanese ancestry cases, 2,850 Japanese ancestry controls	415 Japanese ancestry cases, 6,602 Japanese ancestry controls, 521 European ancestry cases, 3,577 European ancestry controls	20q13.33	GATA5	rs6061548-T	0.095	5E-15		1.63	[1.44-1.85]	Illumina [2893743] (imputed)	N
1050	chr20	61033891	61033892	rs6061548	31872073	Hosoda Y	2019-12-12	Commun Biol	Genome-wide association analyses identify two susceptibility loci for pachychoroid disease central serous chorioretinopathy.	Central serous retinopathy	610 Japanese ancestry cases, 2,850 Japanese ancestry controls	415 Japanese ancestry cases, 6,602 Japanese ancestry controls, 521 European ancestry cases, 3,577 European ancestry controls	20q13.33	GATA5	rs6061548-T	0.095	3E-12	(Japanese)	1.64	[1.43-1.89]	Illumina [2893743] (imputed)	N
1050	chr20	61034777	61034778	rs6089384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6089384-G	0.910782	3E-16				Affymetrix, Illumina [24558453] (imputed)	N
1050	chr20	61034777	61034778	rs6089384	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.33	NR	rs6089384-G	0.928528	2E-16		0.031475	[0.024-0.039] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1050	chr20	61036548	61036548	rs11480832	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.33	NR	rs11480832-I	0.92825	2E-14		0.030302	[0.023-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1050	chr20	61037489	61037490	rs4925184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.33	GATA5	rs4925184-A	0.9279162	2E-11		0.029307246	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1050	chr20	61037489	61037490	rs4925184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.33	GATA5	rs4925184-A	0.9279127	8E-11		0.028297294	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1050	chr20	61037489	61037490	rs4925184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	20q13.33	NR	rs4925184-A	0.928006	1E-17		0.032411	[0.025-0.04] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1050	chr20	61040312	61040313	rs6421437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	20q13.33		rs6421437-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1050	chr20	61041652	61041653	rs6061244	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	20q13.33		rs6061244-G	0.614	3E-10		1.0869565	[1.05-1.11]	Affymetrix, Illumina [42907111] (imputed)	N
1050	chr20	61041652	61041653	rs6061244	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	20q13.33	GATA5	rs6061244-G	0.386	8E-10		1.0752687	[1.05-1.1]	Affymetrix, Illumina [42907111] (imputed)	N
1050	chr20	61049549	61049550	rs6061555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.33		rs6061555-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	20q13.33		rs200383755-?	NR	1E-13		0.0897508	[0.065-0.114] unit increase	NR [9800000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FVC)	371,898 European ancestry individuals	NA	20q13.33		rs200383755-?	NR	5E-18		0.110222	[0.085-0.136] unit decrease	NR [9800000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	20q13.33		rs200383755-?	NR	4E-15		0.0952815	[0.071-0.12] unit increase	NR [9800000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	20q13.33		rs200383755-?	NR	3E-12		0.0758911	[0.054-0.098] unit decrease	NR [9800000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	20q13.33		rs200383755-?	NR	9E-11		0.0749547	[0.051-0.099] unit decrease	NR [9800000] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	20q13.33	GATA5	rs200383755-C	0.0057	3E-12		0.09045459	[0.065-0.116] unit increase	Affymetrix [up to 29454346] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	445,360 European ancestry individuals	225,112 European ancestry individuals	20q13.33	GATA5	rs200383755-C	0.0057	1E-13		0.09665313	[0.071-0.122] unit increase	Affymetrix [up to 29454346] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms (prostate cancer excluded)	18,138 European ancestry cases, 277,213 European ancestry controls	NA	20q13.33		rs200383755-G	0.9909	1E-9		1.5625	[1.35-1.82]	Affymetrix, Illumina [42907111] (imputed)	N
1050	chr20	61050521	61050522	rs200383755	30410027	Gudmundsson J	2018-11-08	Nat Commun	Genome-wide associations for benign prostatic hyperplasia reveal a genetic correlation with serum levels of PSA.	Benign prostatic hyperplasia and lower urinary tract symptoms	20,621 European ancestry cases, 280,541 European ancestry controls	NA	20q13.33	GATA5	rs200383755-G	0.0091	7E-12		1.6129031	[1.41-1.85]	Affymetrix, Illumina [42907111] (imputed)	N
1050	chr20	61054976	61054977	rs6089391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6089391-C	0.55513	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
1050	chr20	61054976	61054977	rs6089391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.33	NR	rs6089391-C	0.583497	2E-12		0.013946	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1050	chr20	61060933	61060934	rs4514955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	20q13.33		rs4514955-G	0.560285	6E-9		0.013304173	[0.0088-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1050	chr20	61060985	61060986	rs6121406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.33		rs6121406-G	NR	1E-11		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1050	chr20	61060985	61060986	rs6121406	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.33		rs6121406-G	0.560448	6E-11		0.015127396	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1050	chr20	61071752	61071753	rs7270007	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.33	NR	rs7270007-?	NR	7E-7		0.008623	[0.0052-0.012] unit decrease	Affymetrix [805426] (imputed)	N
1051	chr20	61081700	61081701	rs6089394	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	20q13.33	NR	rs6089394-?	NR	7E-6		1.43	NR	Affymetrix [345072]	N
1051	chr20	61144940	61144941	rs6062278	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs6062278-?	NR	1E-9	(Brain stem)			NR [9227495] (imputed)	N
1051	chr20	61145195	61145196	rs12479469	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs12479469-?	NR	4E-11	(left ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61145195	61145196	rs12479469	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs12479469-?	NR	2E-8	(Brain stem)			NR [9227495] (imputed)	N
1051	chr20	61145195	61145196	rs12479469	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs12479469-?	NR	1E-10	(right ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61145195	61145196	rs12479469	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	20q13.33	NR	rs12479469-A	0.3354	1E-11		6.784	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1051	chr20	61145596	61145597	rs6062277	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs6062277-?	NR	2E-11	(left ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61148450	61148451	rs4637207	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs4637207-?	NR	3E-9	(right ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61154436	61154437	rs6062237	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs6062237-?	NR	1E-12	(right ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	20q13.33	NR	rs6062264-?		8E-12				NR [7428630] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	20q13.33	EXOC4	rs6062264-?		4E-14				NR [7428630] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	20q13.33	SMARCAD1	rs6062264-?		2E-11				NR [7428630] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter integrity (fractional anisotropy)	17,663 European ancestry individuals	NA	20q13.33	MIR1-1HG	rs6062264-T	0.280631	1E-8		0.271227	[0.18-0.36] unit decrease	Affymetrix [NR] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs6062264-?	NR	9E-15	(left ventral DC)			NR [9227495] (imputed)	N
1051	chr20	61154870	61154871	rs6062264	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs6062264-?	NR	1E-9	(Brain stem)			NR [9227495] (imputed)	N
1051	chr20	61155087	61155088	rs6062262	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			C20orf166	rs6062262-A	0.3125	1E-11		0.0598765	[0.043-0.077] unit decrease	Affymetrix [8165723] (imputed)	N
1051	chr20	61157938	61157939	rs7269123	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	20q13.33	C20orf166	rs7269123-C	0.58	6E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1051	chr20	61178526	61178527	rs113871531	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	20q13.33	MIR1-1HG, SLCO4A1	rs113871531-?	NR	2E-8		0.3769	[0.24-0.52] unit increase	Affymetrix [11100000] (imputed)	N
1051	chr20	61178670	61178671	rs28414612	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	20q13.33	C20orf166	rs28414612-T	0.7529	5E-13		0.5666	[0.41-0.72] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1051	chr20	61179259	61179260	rs28572127	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.33		rs28572127-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1051	chr20	61205411	61205412	rs73918339	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment in bipolar disorder	1,639 European ancestry responder cases, 1,059 European ancestry non-responder cases	NA	20q13.33	MIR1-1, C20orf200, C20orf166, MIR133A2	rs73918339-C	0.09	4E-7		1.79	[NR]	NR [> 8000000] (imputed)	N
1052	chr20	61271338	61271339	rs4809556	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	20q13.33		rs4809556-A	NR	6E-15		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1052	chr20	61273959	61273960	rs34885433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.33		rs34885433-A	NR	8E-10		0.0411	[0.028-0.054] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1052	chr20	61277013	61277014	rs1815591	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.33	NR	rs1815591-T	0.6019	5E-12		0.0337	[0.024-0.043] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1052	chr20	61277013	61277014	rs1815591	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.33	NR	rs1815591-T	0.5927	3E-14		0.0313	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1052	chr20	61287668	61287669	rs7347500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	20q13.33		rs7347500-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1052	chr20	61288592	61288593	rs140267842	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 2,545 European ancestry women	up to 46,638 European ancestry women	20q13.33	SLCO4A1	rs140267842-A	0.0091	2E-8		0.7854	[0.51-1.06] year increase	Illumina [Exome array]	N
1052	chr20	61289742	61289743	rs2236553	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	20q13.33	SLCO4A1, DIDO1	rs2236553-C	0.24	6E-10		0.16	[0.1-0.22] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1052	chr20	61295253	61295254	rs111332410	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	20q13.33		rs111332410-T	NR	4E-6		1.4596		Illumina [up to 7574753] (imputed)	N
1052	chr20	61303565	61303566	rs1055196	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	NTSR1	rs1055196-?	NR	8E-6	(guanosine monophosphate)	0.21998584	[0.12-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
1052	chr20	61326379	61326380	rs2427394	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	20q13.33	NR	rs2427394-?	NR	6E-29				Affymetrix [NR]	N
1052	chr20	61341471	61341472	rs3746778	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20q13.33	NR	rs3746778-G	0.579511	1E-15		0.0159772	[0.012-0.02] unit increase	Affymetrix [15000001]	N
1052	chr20	61341471	61341472	rs3746778	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs3746778-G	0.579478	7E-10		0.0131675	[0.009-0.0174] unit increase	NR [NR]	N
1053	chr20	61348619	61348620	rs2427407	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	20q13.33	NTSR1	rs2427407-G	0.94	3E-7		0.84	NR unit decrease	Affymetrix [352228] (imputed)	N
1053	chr20	61412760	61412761	rs6062637	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	20q13.33	NR	rs6062637-A	0.227	7E-6	(IFNalpha_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1053	chr20	61429143	61429144	rs6010746	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to platinum-based chemotherapy (carboplatin)	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	20q13.33		rs6010746-?	NR	5E-7				Illumina [1510701]	N
1053	chr20	61440004	61440005	rs35628589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	20q13.33		rs35628589-T	NR	2E-25		0.0348	[0.028-0.041] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1053	chr20	61440004	61440005	rs35628589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	20q13.33	OGFR	rs35628589-T	NR	7E-14		0.0468067	[0.035-0.059] unit increase	Affymetrix [321114] (imputed)	N
1053	chr20	61440004	61440005	rs35628589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	20q13.33	OGFR	rs35628589-T	NR	3E-8		0.0347108	[0.022-0.047] unit increase	Affymetrix [323858] (imputed)	N
1053	chr20	61440004	61440005	rs35628589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs35628589-?	NR	1E-45				NR [~ 8900000] (imputed)	N
1053	chr20	61444938	61444939	rs11543349	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	20q13.33	OGFR	rs11543349-C	0.345	2E-7		1.32	[0.83-1.81] unit decrease	Illumina [~ 244000]	N
1053	chr20	61444938	61444939	rs11543349	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	20q13.33	OGFR	rs11543349-C	0.345	3E-8		0.01	[0.0041-0.0159] umol/L increase	Illumina [~ 244000]	N
1053	chr20	61451331	61451332	rs61734651	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.33	NR	rs61734651-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
1053	chr20	61451331	61451332	rs61734651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.33		rs61734651-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1053	chr20	61460088	61460089	rs55771770	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	20q13.33	NR	rs55771770-T	0.047826	2E-6		0.1904475	[0.11-0.27] unit increase	Illumina [9469131] (imputed)	N
1053	chr20	61462501	61462502	rs66658258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.33	NR	rs66658258-C	0.5718	1E-6	(East Asian)	0.374	[0.22-0.52] unit increase	Illumina [6200000] (imputed)	N
1053	chr20	61462501	61462502	rs66658258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.33	NR	rs66658258-C	0.5783	1E-8	(East Asian)	0.3117	[0.2-0.42] unit increase	Illumina [6200000] (imputed)	N
1053	chr20	61462501	61462502	rs66658258	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	20q13.33	NR	rs66658258-C	0.5783	1E-8	(East Asian)	0.2803	[0.18-0.38] unit increase	Illumina [6200000] (imputed)	N
1054	chr20	61491493	61491494	rs17854409	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	TCFL5	rs17854409-G	0.055	9E-6	(Cortisol )	0.02	[NR] ng/mL increase	Illumina [899892]	N
1054	chr20	61533038	61533039	rs10854167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	20q13.33		rs10854167-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1054	chr20	61546649	61546650	rs755167	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.33	DIDO1	rs755167-T	0.505602	1E-10		0.0128481	[0.0088-0.0169] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr20	61549201	61549202	rs13040088	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	20q13.33	SLCO4A1, DIDO1	rs13040088-G	0.21	2E-10		0.16	[0.12-0.2] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1054	chr20	61550176	61550176	rs11086146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	20q13.33	NR	rs11086146-I	0.212354	3E-11		0.016347	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1054	chr20	61558273	61558274	rs12480117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	20q13.33		rs12480117-A	NR	8E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1054	chr20	61564900	61564901	rs73619441	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	20q13.33	GID8	rs73619441-T	0.8563	3E-9		0.0161	[0.011-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1054	chr20	61564900	61564901	rs73619441	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.33	NR	rs73619441-?	NR	8E-6	(female)	0.15286	[0.086-0.22] unit decrease	Affymetrix [7794483] (imputed)	N
1054	chr20	61564900	61564901	rs73619441	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	20q13.33	NR	rs73619441-?	NR	3E-8		0.17466	[0.11-0.24] unit decrease	Affymetrix [7794483] (imputed)	N
1054	chr20	61571720	61571721	rs6062380	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.33	NR	rs6062380-G	0.483491	2E-11		0.013017	[0.0092-0.0168] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1054	chr20	61573735	61573736	rs3787513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	20q13.33	GID8	rs3787513-A	0.209286	1E-10		0.01750064	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1054	chr20	61573735	61573736	rs3787513	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs3787513-A	0.223445	5E-10				Affymetrix, Illumina [23467995] (imputed)	N
1055	chr20	61612627	61612628	rs8116164	30610941	Wang AW	2019-01-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study in two populations to determine genetic variants associated with Toxoplasma gondii infection and relationship to schizophrenia risk.	Anti-Toxoplasma gondii IgG seropositivity	256 Ashkenazi Jewish cases, 68 African American cases, 534 Ashkenazi Jewish controls, 217 African American controls	NA	20q13.33	SLC17A9, BHLHE23	rs8116164-?		8E-7	(AA)	5.75		Affymetrix, Illumina [up to 1101633] (imputed)	N
1055	chr20	61633710	61633711	rs73145706	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Naive-mature B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.33		rs73145706-T	0.01281	2E-8		0.6017	[0.39-0.81] unit decrease	Illumina [18238287] (imputed)	N
1055	chr20	61633710	61633711	rs73145706	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD24- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	20q13.33		rs73145706-T	0.01281	5E-8		0.5808	[0.37-0.79] unit decrease	Illumina [18238287] (imputed)	N
1055	chr20	61647433	61647434	rs2427483	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	20q13.33	NR	rs2427483-?	NR	6E-7		1.57	[1.43-1.73]	Illumina [539000] (imputed)	N
1055	chr20	61691009	61691010	rs6011570	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	20q13.33	LINC01749	rs6011570-G	0.999991883228607	9E-8		0.54382	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1055	chr20	61692923	61692924	rs111174523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	20q13.33	NR	rs111174523-?	NR	7E-6		0.0077048	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1055	chr20	61693605	61693606	rs6062788	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20q13.33	LOC63930	rs6062788-A	0.467	4E-6	(EA, women)	0.022	[0.012-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1056	chr20	61757339	61757340	rs2427517	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20q13.33		rs2427517-?	NR	4E-8				NR [NR]	N
1056	chr20	61757339	61757340	rs2427517	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20q13.33		rs2427517-?	NR	2E-8				NR [NR]	N
1056	chr20	61757339	61757340	rs2427517	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20q13.33		rs2427517-?	NR	3E-8				NR [NR]	N
1056	chr20	61757339	61757340	rs2427517	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	20q13.33		rs2427517-?	NR	4E-8				NR [NR]	N
1056	chr20	61766118	61766119	rs187056855	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	20q13.33	NR	rs187056855-G	0.241	3E-6	(Females)	0.285322	[0.17-0.4] unit decrease	Illumina [~ 6600000] (imputed)	N
1056	chr20	61773456	61773457	rs73308970	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	20q13.33	HAR1A, MIR124-3	rs73308970-A	0.082	9E-6		1.06	[1.09-18.94]	Affymetrix [up to 27494467] (imputed)	N
1056	chr20	61854451	61854452	rs6011674	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	20q13.33	YTHDF1	rs6011674-?		2E-6				Affymetrix, Illumina [1348798]	N
1057	chr20	61895919	61895920	rs1406961	21779381	Schurks M	2011-07-14	PLoS One	Genetic determinants of cardiovascular events among women with migraine: a genome-wide association study.	Cardiovascular disease risk factors	5,122 European ancestry female migrain cases	NA	20q13.33	intergenic	rs1406961-?	NR	5E-7	(migraineurs with aura - CVD death)	12.33	[4.62-32.87]	Illumina [339596]	N
1057	chr20	61980260	61980261	rs6062901	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	20q13.33	CHRNA4	rs6062901-G	NR	8E-7	(EA)	0.043	[0.026-0.06] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1057	chr20	61980260	61980261	rs6062901	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	20q13.33	CHRNA4	rs6062901-G	NR	3E-7		0.034	[0.021-0.047] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	33144568	Quach BC	2020-11-03	Nat Commun	Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.	Nicotine dependence	46,213 European ancestry individuals, 11,787 African American individuals	31,854 European ancestry individuals, 1,937 individuals	20q13.33	CHRNA4	rs6011779-T	NR	4E-16		0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	20q13.33	CHRNA4	rs6011779-T		2E-21		0.946	[NR]	Affymetrix [up to 79000000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	20q13.33		rs6011779-C	0.191	2E-27		0.028	[0.022-0.034] unit increase	Affymetrix [up to 90000000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	20q13.33	CHRNA4	rs6011779-T	0.806	7E-10		0.0317	[0.022-0.042] unit decrease	Illumina [~ 250000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.33	NR	rs6011779-T	0.806	3E-18		0.0120827	[0.0094-0.0148] unit decrease	NR [9732723] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q13.33	NR	rs6011779-T	0.806	3E-9		0.01917655	[0.013-0.026] unit decrease	NR [~ 10000000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	20q13.33	NR	rs6011779-T	0.806	1E-39		0.0260499	[0.022-0.03] unit decrease	NR [9732723] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	20q13.33	NR	rs6011779-T	0.806	1E-23		0.05002198	[0.04-0.06] unit decrease	NR [~ 10000000] (imputed)	N
1057	chr20	61984316	61984317	rs6011779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	20q13.33	NR	rs6011779-T	0.804	8E-15		0.0144378	[0.011-0.018] unit increase	NR [9732723] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	20q13.33		rs2273500-C	NR	2E-9		0.0947	[0.064-0.125] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	20q13.33	NR	rs2273500-C	0.147	3E-26		0.036385704	[0.03-0.043] unit increase	NR [~ 10000000] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	20q13.33	NR	rs2273500-C	0.147	2E-39		0.041068	[0.035-0.047] unit increase	NR [9732723] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (father's attained age)	415,311 British ancestry individuals	NA	20q13.33	CHRNA4	rs2273500-T	0.856	2E-8		0.0176	[0.012-0.024] unit decrease	Affymetrix [11535925] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	29227965	Pilling LC	2017-12-01	Aging (Albany NY)	Human longevity: 25 genetic loci associated in 389,166 UK biobank participants.	Parental longevity (combined parental attained age, Martingale residuals)	389,166 British ancestry individuals	NA	20q13.33	CHRNA4	rs2273500-T	NR	4E-7			[NR]	Affymetrix [11535925] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	28972577	Hancock DB	2017-10-03	Mol Psychiatry	Genome-wide association study across European and African American ancestries identifies a SNP in DNMT3B contributing to nicotine dependence.	Nicotine dependence	28,677 European ancestry individuals, 9,925 African American individuals	NA	20q13.33	CHRNA4	rs2273500-C	NR	2E-6	(EA)	0.046	[0.027-0.065] unit increase	Affymetrix, Illumina [~ 18000000] (imputed)	N
1057	chr20	61986948	61986949	rs2273500	26440539	Hancock DB	2015-10-06	Transl Psychiatry	Genome-wide meta-analysis reveals common splice site acceptor variant in CHRNA4 associated with nicotine dependence.	Nicotine dependence	9,137 European ancestry mild cases, 4,881 European ancestry moderate cases, 3,056 European ancestry severe cases	2,662 European ancestry mild cases, 3,044 European ancestry moderate cases, 1,763 European ancestry severe cases	20q13.33	CHRNA4	rs2273500-C	0.15	8E-9		0.058	[NR] unit increase	Illumina [8548225] (imputed)	N
1057	chr20	61986949	61986950	rs4809543	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	20q13.33	NR	rs4809543-A	0.075645	2E-9	(Conditioned on chr20:62018289, chr20:61984317)	0.044410337	[0.03-0.059] unit increase	NR [~ 10000000] (imputed)	N
1057	chr20	61990938	61990939	rs2273506	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	20q13.33	CHRNA4	rs2273506-A	NR	9E-7		0.03	[0.01-0.05] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1057	chr20	61991832	61991833	rs45497800	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarette pack-years)	up to 150,993 European ancestry individuals	NA	20q13.33	CHRNA4	rs45497800-T	0.0867	2E-16		0.0541	[0.041-0.067] unit increase	Illumina [~ 250000] (imputed)	N
1057	chr20	61992004	61992005	rs11697662	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	20q13.33	NR	rs11697662-C	0.34	2E-6		1.1	[1.06-1.14]	Illumina [8468885] (imputed)	N
1057	chr20	61992004	61992005	rs11697662	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Cigarettes smoked per day (current)	17,014 European ancestry individuals	NA	20q13.33		rs11697662-C	NR	7E-9		0.016	NR unit increase	Affymetrix [~ 79000000] (imputed)	N
1057	chr20	61992004	61992005	rs11697662	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Smoking status (heavy vs never)	24,457 European ancestry heavy smokers, 24,474 European ancestry never smokers	NA	20q13.33	CHRNA4	rs11697662-C	0.195	1E-7		1.0952903	[1.06-1.13]	Affymetrix [28509962] (imputed)	N
1057	chr20	61992699	61992700	rs183345681	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	20q13.33	CHRNA4	rs183345681-A	NR	5E-7	(Perc15, All)	2.4	[1.48-3.32] unit increase	Illumina [7600000] (imputed)	N
1057	chr20	61992699	61992700	rs183345681	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	20q13.33	CHRNA4	rs183345681-A	NR	2E-7	(%LAA-950, All)	0.12	[0.075-0.165] unit decrease	Illumina [7600000] (imputed)	N
1058	chr20	62001199	62001200	rs372248726	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	20q13.33	NR	rs372248726-T	0.01238	3E-6		0.632	[0.37-0.9] unit increase	Illumina [10677593] (imputed)	N
1058	chr20	62003425	62003426	rs62207961	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	20q13.33	NR	rs62207961-T	0.0357	9E-7		0.0309433	[0.019-0.043] unit increase	NR [9732723] (imputed)	N
1058	chr20	62018288	62018289	rs6089904	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	20q13.33	NR	rs6089904-T	0.047	4E-16		0.0325419	[0.025-0.04] unit decrease	NR [9732723] (imputed)	N
1058	chr20	62018288	62018289	rs6089904	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	20q13.33	NR	rs6089904-T	0.047486	4E-12	(Conditioned on chr20:61984317)	0.06418339	[0.046-0.082] unit decrease	NR [~ 10000000] (imputed)	N
1058	chr20	62050187	62050188	rs12479598	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	20q13.33	NR	rs12479598-?	NR	6E-6		0.3909	[0.21-0.57] unit decrease	Illumina [at least 560000] (imputed)	N
1058	chr20	62052843	62052844	rs149329391	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	20q13.33		rs149329391-?	NR	6E-7		0.6872664	[0.42-0.96] unit decrease	Illumina [9875426] (imputed)	N
1058	chr20	62052843	62052844	rs149329391	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	20q13.33		rs149329391-?	NR	3E-7		0.7690801	[0.48-1.06] unit decrease	Illumina [9842460] (imputed)	N
1058	chr20	62087675	62087676	rs78606172	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	20q13.33		rs78606172-A	NR	4E-11		7.6094	[5.45-9.76] unit increase	Illumina [NR] (imputed)	N
1058	chr20	62087675	62087676	rs78606172	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-like 1 protein levels	252 European ancestry individuals	NA	20q13.33		rs78606172-A	NR	6E-6		0.84448	[0.49-1.2] unit increase	Illumina [NR] (imputed)	N
1058	chr20	62095752	62095753	rs62208042	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	20q13.33	KCNQ2	rs62208042-G	0.8	2E-6		0.21	[0.13-0.29] unit increase	Illumina [4381914] (imputed)	N
1058	chr20	62109169	62109170	rs310602	34441435	Corma-Gomez A	2021-08-20	Diagnostics (Basel)	A Genome-Wide Association Study on Liver Stiffness Changes during Hepatitis C Virus Infection Cure.	Liver stiffness changes at sustained virological response following antiviral therapy in HCV infection	242 European ancestry individuals	NA	20q13.33		rs310602-A	0.101	7E-6		15.78	[9.059-22.51] unit decrease	Affymetrix [6939676] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	9E-10	(136 ms)	0.0398172	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	8E-9	(202 ms)	0.034644	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	7E-9	(166 ms)	0.0357828	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	7E-10	(192 ms)	0.0374571	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	6E-9	(152 ms)	0.0370449	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	5E-9	(218 ms)	0.0351587	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	5E-9	(206 ms)	0.0353802	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	5E-9	(190 ms)	0.0357028	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	5E-11	(174 ms)	0.0410285	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	4E-9	(162 ms)	0.0369855	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	4E-11	(180 ms)	0.0400572	[0.028-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	4E-10	(194 ms)	0.0380499	[0.026-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	4E-10	(184 ms)	0.0385042	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	3E-9	(210 ms)	0.0355259	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	3E-9	(208 ms)	0.0360237	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	3E-8	(164 ms)	0.0347745	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	2E-9	(196 ms)	0.036537	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	2E-9	(188 ms)	0.036072	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	2E-9	(168 ms)	0.0372019	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	2E-11	(178 ms)	0.0408362	[0.029-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	2E-11	(176 ms)	0.0418452	[0.03-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	1E-9	(186 ms)	0.0372779	[0.025-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	1E-8	(204 ms)	0.0345496	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	1E-8	(200 ms)	0.0342393	[0.022-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	1E-8	(198 ms)	0.0345183	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1058	chr20	62125232	62125233	rs310614	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	EEF1A2	rs310614-A	0.295026	1E-10	(182 ms)	0.0394299	[0.027-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
1059	chr20	62132710	62132711	rs6090435	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	20q13.33	KCNQ2, EEF1A2, PPDPF, PTK6, SRMS	rs6090435-G	0.497	8E-7		1.0613008		NR [9372253] (imputed)	N
1059	chr20	62132710	62132711	rs6090435	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	20q13.33	KCNQ2, EEF1A2, PPDPF, PTK6, SRMS	rs6090435-G	0.497	3E-7		1.0910003	[NR]	NR [9372253] (imputed)	N
1059	chr20	62133176	62133177	rs880446	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	20q13.33	EEF1A2, PPDPF, PTK6, SRMS	rs880446-A		4E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [NR]	N
1059	chr20	62139176	62139177	rs6122466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs6122466-G	NR	5E-13		0.0246	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1059	chr20	62139176	62139177	rs6122466	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs6122466-G	NR	7E-14		0.0255	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1059	chr20	62148911	62148912	rs2314639	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	20q13.33	EEF1A2, PPDPF	rs2314639-T	0.199269	5E-14	(guanidinoacetate)	0.219	[0.16-0.28] unit increase	Illumina [13039987] (imputed)	N
1059	chr20	62148911	62148912	rs2314639	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	20q13.33	EEF1A2, PPDPF	rs2314639-T	0.199269	5E-14	(guanidinoacetate)	0.219	[0.16-0.28] unit increase	Illumina [13039987] (imputed)	N
1059	chr20	62152518	62152519	rs72629024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	20q13.33		rs72629024-G	NR	2E-17		0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1059	chr20	62152518	62152519	rs72629024	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.33	PPDPF	rs72629024-C	0.6634	2E-17		0.0035	[0.0025-0.0045] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1059	chr20	62155110	62155111	rs427230	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	20q13.33	NR	rs427230-T	NR	4E-8		1.12	[NR]	Illumina [7158791] (imputed)	N
1059	chr20	62157197	62157198	rs11699828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.33	NR	rs11699828-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1059	chr20	62157197	62157198	rs11699828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	20q13.33		rs11699828-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1059	chr20	62161997	62161998	rs310642	29220522	Liu F	2017-12-06	Hum Mol Genet	Meta-analysis of genome-wide association studies identifies 8 novel loci involved in shape variation of human head hair.	Hair shape	16,763 European ancestry individuals	2,340 European ancestry individuals, 2,899 Han Chinese ancestry individuals, 709 Uyghur ancestry individuals, 6,238 Latin American individuals, 15 South American, South Asian or Middle Eastern individuals	20q13.33	PTK6	rs310642-C	0.051953983	3E-14		0.063433416	[0.047-0.08] unit increase	Illumina [up to 9350000] (imputed)	N
1059	chr20	62190264	62190265	rs62206965	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HELZ2	rs62206965-?	NR	1E-9	(male)	3.3462	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1059	chr20	62191474	62191475	rs3810478	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	20q13.33		rs3810478-T	NR	8E-7		0.01	[0.0061-0.0139] unit increase	NR [7831927]	N
1059	chr20	62191474	62191475	rs3810478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs3810478-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1059	chr20	62194029	62194030	rs3810483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	20q13.33		rs3810483-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1059	chr20	62194102	62194103	rs3810484	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	20q13.33	HELZ2	rs3810484-A		1E-12		0.0063	[0.0045-0.0081] unit increase	Affymetrix [13304133] (imputed)	N
1059	chr20	62195086	62195087	rs310630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.33	HELZ2	rs310630-G	0.441053	3E-9		0.013492735	[0.009-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	20q13.33		rs310631-C	0.587263	6E-9		0.0235242	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.33		rs310631-C	0.587277	4E-8		0.0221258	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	20q13.33		rs310631-C	0.587277	5E-8		0.0219488	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.33		rs310631-C	0.587277	2E-9		0.0248614	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.33		rs310631-C	0.587264	1E-9		0.0243392	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	20q13.33		rs310631-C	0.587277	7E-9		0.0235349	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	20q13.33		rs310631-C	0.587264	1E-9		0.0249007	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1059	chr20	62196252	62196253	rs310631	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q13.33	HELZ2	rs310631-A	0.411216	5E-9		0.013184678	[0.0088-0.0176] unit increase	Affymetrix [93095623] (imputed)	N
1059	chr20	62202562	62202563	rs73622826	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	20q13.33	Intergenic	rs73622826-?		5E-6		39.6	[22.55-56.65] unit increase	Illumina [~ 10000000] (imputed)	N
1059	chr20	62216807	62216808	rs311500	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.33		rs311500-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	6E-9	(4 ms)	0.0386953	[0.026-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	4E-9	(-4 ms)	0.0397192	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	3E-8	(-6 ms)	0.0377516	[0.025-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	2E-9	(2 ms)	0.0397238	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	2E-9	(0 ms)	0.0399832	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62222410	62222411	rs3787112	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	20q13.33	GMEB2	rs3787112-G	0.760934	2E-9	(-2 ms)	0.0401388	[0.027-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1059	chr20	62225507	62225508	rs16983844	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs16983844-A	0.2142	8E-9	(MTAG)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1059	chr20	62229988	62229989	rs381331	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.33	NR	rs381331-A	NR	1E-12		1.052	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
1059	chr20	62234687	62234688	rs13043510	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	20q13.33		rs13043510-?	NR	3E-9		0.664007	[0.53-0.8]	NR [680312]	N
1059	chr20	62239771	62239772	rs77209743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	20q13.33	GMEB2	rs77209743-C	0.334961	3E-9		0.013931876	[0.0093-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62265951	62265952	rs201078918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	20q13.33	NR	rs201078918-C	0.36618	1E-10		0.015327309	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62268340	62268341	rs71325459	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	20q13.33		rs71325459-?	NR	3E-7		0.889242	[0.84-0.93]	NR [688737]	N
1060	chr20	62268340	62268341	rs71325459	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	20q13.33		rs71325459-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1060	chr20	62269337	62269338	rs2738774	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	20q13.33	TNFRSF6B	rs2738774-A	0.32	9E-7				Illumina [7347414] (imputed)	N
1060	chr20	62269749	62269750	rs75691080	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20q13.33	RTEL1, STMN3	rs75691080-T	0.09	6E-14		0.067	[0.049-0.085] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1060	chr20	62269749	62269750	rs75691080	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	20q13.33	RTEL1	rs75691080-T	0.095	1E-6		0.16	[NR] unit decrease	Affymetrix, Illumina [at least 1569314] (imputed)	N
1060	chr20	62272247	62272248	rs2259797	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q13.33		rs2259797-T	NR	9E-8		1.133	[1.082-1.186]	Affymetrix [7846216] (imputed)	N
1060	chr20	62272410	62272411	rs6423444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	20q13.33		rs6423444-A	NR	3E-15		0.1117	[0.084-0.14] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1060	chr20	62281504	62281505	rs147522398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	20q13.33	NR	rs147522398-C	0.279089	5E-12		0.015088	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1060	chr20	62281504	62281505	rs147522398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.33		rs147522398-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1060	chr20	62284925	62284927	rs201497780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	20q13.33		rs201497780-G	NR	2E-11		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1060	chr20	62284925	62284927	rs201497780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.33	RTEL1, STMN3	rs201497780-G	0.679452	1E-15		0.019073809	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr20	62291598	62291599	rs34978822	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.33	RTEL1-TNFRSF6B, RTEL1	rs34978822-G	0.0212869999999999	2E-10		0.051110636	[0.035-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr20	62291598	62291599	rs34978822	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q13.33		rs34978822-C	NR	8E-10		1.342	[1.222-1.474]	Affymetrix [7846216] (imputed)	N
1060	chr20	62291598	62291599	rs34978822	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20q13.33	RTEL1	rs34978822-G	0.02	7E-10		0.14	[0.095-0.185] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1060	chr20	62291766	62291767	rs143190905	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	20q13.33	RTEL1	rs143190905-G	0.9068833	4E-12				Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62291766	62291767	rs143190905	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	20q13.33	RTEL1	rs143190905-G	0.9069	7E-13		1.1454	NR	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62293117	62293118	rs41308088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	20q13.33		rs41308088-T	NR	1E-9		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
1060	chr20	62293459	62293460	rs2297433	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (TERT mutation only)	419 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	159 European and unknown ancestry cases, 808 European and unknown ancestry controls	20q13.33	RTEL1	rs2297433-?	NR	4E-12		6.932	NR z score increase	Illumina [NR] (imputed)	N
1060	chr20	62293459	62293460	rs2297433	32386320	Eckel-Passow JE	2020-05-09	Neuro Oncol	Adult Diffuse Glioma GWAS by Molecular Subtype Identifies Variants in D2HGDH and FAM20C.	Adult diffuse glioma (IDH wildtype)	698 European and unknown ancestry cases, 1,889 European and unknown ancestry controls	409 European and unknown ancestry cases, 808 European and unknown ancestry controls	20q13.33	RTEL1	rs2297433-?	NR	5E-13		7.223	NR z score increase	Illumina [NR] (imputed)	N
1060	chr20	62297801	62297802	rs6011002	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	20q13.33	RTEL1	rs6011002-?	NR	3E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1060	chr20	62300810	62300811	rs3848669	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	20q13.33		rs3848669-T	0.7784	8E-20		1.13		Affymetrix, Illumina [9397031] (imputed)	N
1060	chr20	62300810	62300811	rs3848669	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	20q13.33	NR	rs3848669-t	0.7791	3E-15		1.11	[1.08-1.13]	Affymetrix, Illumina [16201029] (imputed)	N
1060	chr20	62302538	62302539	rs6062486	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Eczema	7,884 European ancestry cases, 239,773 European ancestry controls	21,000 cases, 96,000 controls	20q13.33	RTEL1	rs6062486-?	0.7008	1E-8		1.1376565	[1.09-1.19]	Affymetrix [15688218] (imputed)	N
1060	chr20	62303114	62303115	rs4809219	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	20q13.33	RTEL1, TNFRSF6B	rs4809219-A	0.73	7E-13	(EA, fixed effects)	1.1111112		Illumina [15539996] (imputed)	N
1060	chr20	62306409	62306410	rs3787100	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	20q13.33	NR	rs3787100-G	0.7549	2E-12		1.049979	[1.04-1.06]	Affymetrix [15688218] (imputed)	N
1060	chr20	62307516	62307517	rs3787099	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	20q13.33	NR	rs3787099-A	0.921220997	3E-6		1.1690993	[1.10-1.25]	Affymetrix, Illumina [20400945] (imputed)	N
1060	chr20	62307516	62307517	rs3787099	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.33	NR	rs3787099-A	NR	6E-15		1.108	[1.08-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
1060	chr20	62308157	62308158	rs3787096	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	20q13.33	RTEL1, RTEL1-TNFRSF6B	rs3787096-G	0.5597	3E-11		0.02508724	[0.018-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1060	chr20	62308262	62308262	rs3838004	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	20q13.33		rs3838004-TG	NR	3E-11		0.0121	[0.0086-0.0156] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1060	chr20	62308611	62308612	rs2738783	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	20q13.33	RTEL1	rs2738783-G	NR	2E-7		1.045	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1060	chr20	62308611	62308612	rs2738783	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	20q13.33	NR	rs2738783-T	0.2109	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1060	chr20	62309553	62309554	rs41309367	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	20q13.33	RTEL1	rs41309367-T	NR	1E-8	(East Asian)	0.058	NR unit decrease	Illumina [6407959] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	20q13.33		rs6010620-G	NR	5E-18		0.1525	[0.12-0.19] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	20q13.33		rs6010620-G	0.335426722	7E-10		0.17175277	[0.12-0.23] unit increase	Illumina [13428180] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	30714141	Chen H	2019-02-04	Int J Cancer	Two novel genetic variants in the STK38L and RAB27A genes are associated with glioma susceptibility.	Glioma	992 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls	2,105 Han Chinese ancestry cases, 3,374 Han Chinese ancestry controls	20q13.33	RTEL1	rs6010620-G	0.26	7E-12		1.29	[1.20-1.38]	Illumina [1889625] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	26482879	Paternoster L	2015-10-19	Nat Genet	Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis.	Atopic dermatitis	18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls	30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls	20q13.33	TNFRSF6B	rs6010620-G	NR	2E-9	(EA, fixed effects)	1.09	[1.06-1.13]	Illumina [15539996] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	24908248	Walsh KM	2014-06-08	Nat Genet	Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk.	Glioma (high-grade)	1,013 European ancestry cases, 6,595 European ancestry controls	631 European ancestry cases, 1,141 European ancestry controls	20q13.33	RTEL1	rs6010620-G	0.76	5E-19		1.56	[1.42-1.72]	Affymetrix, Illumina [2362330] (imputed)	N
1060	chr20	62309838	62309839	rs6010620	22886559	Rajaraman P	2012-08-11	Hum Genet	Genome-wide association study of glioma and meta-analysis.	Glioma	1,856 European ancestry cases, 4,955 European ancestry controls	5,015 European ancestry cases, 11,601 European ancestry controls	20q13.33	TNFRSF6B, RTEL1	rs6010620-G	.771	1E-10		1.43	[1.28-1.59]	Illumina [559977]	N
1060	chr20	62309838	62309839	rs6010620	21531791	Sanson M	2011-04-29	Hum Mol Genet	Chromosome 7p11.2 (EGFR) variation influences glioma risk.	Glioma	4,147 European ancestry cases, 7,435 European ancestry controls	NA	20q13.33	RTEL1	rs6010620-?	NR	2E-9		1.24	[NR]	Illumina [424460]	N
1060	chr20	62309838	62309839	rs6010620	19578367	Shete S	2009-07-05	Nat Genet	Genome-wide association study identifies five susceptibility loci for glioma.	Glioma	1,878 European ancestry cases, 3,670 European ancestry controls	2,545 European ancestry cases, 2,953 European ancestry controls	20q13.33	RTEL1	rs6010620-G	0.23	3E-12		1.28	[1.21-1.35]	Illumina [454576]	N
1060	chr20	62309838	62309839	rs6010620	19578366	Wrensch M	2009-07-05	Nat Genet	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	20q13.33	RTEL1	rs6010620-G	0.77	3E-9		1.52	[1.32-1.75]	Illumina [326506]	N
1060	chr20	62310571	62310572	rs2738784	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	RTEL1	rs2738784-?	NR	1E-6	(pantothenic acid)	0.9042985	[0.54-1.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1060	chr20	62311127	62311128	rs2297439	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	20q13.33	RTEL1	rs2297439-G	0.25	3E-7		0.12	[0.081-0.159] unit decrease	Illumina [~ 6300000] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	20q13.33	RTEL1	rs2297440-C	NR	8E-13	(Below median age-at-diagnosis)	1.41	[1.28-1.55]	NR [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	20q13.33	RTEL1	rs2297440-C	NR	7E-19	(Median age-at-diagnosis)	1.55	[1.40-1.70]	NR [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	30152087	Ostrom QT	2018-08-27	Int J Cancer	Age-specific genome-wide association study in glioblastoma identifies increased proportion of 'lower grade glioma'-like features associated with younger age.	Glioblastoma (age-stratified)	1,533 cases diagnosed below median age, 1,476 cases diagnosed at median age, 1,503 cases diagnosed above median age, 10,582 controls,	NA	20q13.33	RTEL1	rs2297440-C	NR	1E-14	(Above median age-at-diagnosis)	1.45	[1.32-1.60]	NR [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Non-glioblastoma glioma	1,716 European ancestry male cases, 1,320 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	20q13.33	RTEL1	rs2297440-C	NR	3E-7	(males)	1.29	[1.17-1.43]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	20q13.33	RTEL1	rs2297440-C	NR	4E-21	(males)	1.42	[1.32-1.52]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	20q13.33	RTEL1	rs2297440-C	NR	1E-13	(females)	1.37	[1.26-1.49]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	20q13.33	RTEL1	rs2297440-C	NR	1E-19	(males)	1.47	[1.35-1.59]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	20q13.33	RTEL1	rs2297440-C	NR	1E-16	(females)	1.53	[1.39-1.70]	Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	20q13.33	RTEL1	rs2297440-C	0.796	7E-10		1.2	1.13-1.26	Illumina [at least 6769856] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	20q13.33	RTEL1	rs2297440-C	0.796	2E-42		1.36	1.30-1.42	Illumina [at least 6887412] (imputed)	N
1060	chr20	62312298	62312299	rs2297440	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	20q13.33	RTEL1	rs2297440-C	0.796	4E-46		1.48	1.40-1.56	Illumina [at least 6790270] (imputed)	N
1060	chr20	62312754	62312755	rs7361098	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	20q13.33	NR	rs7361098-?	NR	3E-8	(X4th ventricle)			NR [9227495] (imputed)	N
1060	chr20	62316629	62316630	rs3787089	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	20q13.33	NR	rs3787089-C	0.32	6E-9		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1060	chr20	62318219	62318220	rs4809324	19578366	Wrensch M	2009-07-05	Nat Genet	Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.	Glioma (high-grade)	692 European ancestry cases, 3,992 European ancestry controls	176 cases, 174 controls	20q13.33	RTEL1	rs4809324-C	0.10	2E-9		1.6	[1.37-1.87]	Illumina [326506]	N
1060	chr20	62320967	62320968	rs6062302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.33		rs6062302-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1060	chr20	62320967	62320968	rs6062302	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioblastoma	1,783 Northern European ancestry cases, 7,435 Northern European ancestry controls	up to 1,490 European ancestry cases, up to 1,723 European ancestry controls	20q13.33	NR	rs6062302-C	NR	1E-13		1.4285715	[1.3-1.56]	Illumina [at least 8427548] (imputed)	N
1060	chr20	62321127	62321128	rs35640778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	20q13.33		rs35640778-A	NR	8E-13		0.0583	[0.042-0.074] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1060	chr20	62321127	62321128	rs35640778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.33	RTEL1-TNFRSF6B, RTEL1	rs35640778-A	0.021597	2E-11		0.051938783	[0.037-0.067] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62321127	62321128	rs35640778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.33	RTEL1-TNFRSF6B, RTEL1	rs35640778-A	0.02159	8E-17		0.062709	[0.049-0.077] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62321127	62321128	rs35640778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.33		rs35640778-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1060	chr20	62322287	62322288	rs3208007	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	20q13.33		rs3208007-?	NR	3E-12		1.08	[1.06-1.11]	Illumina [5170515] (imputed)	N
1060	chr20	62322287	62322288	rs3208007	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	20q13.33	ARFRP1, LIME1, RTEL1, RTEL1-TNFRSF6B, SLC2A4RG, STMN3, TNFRSF6B, ZBTB46, ZGPAT	rs3208007-?	NR	3E-10		1.0526316		NR [74888535] (imputed)	N
1060	chr20	62322287	62322288	rs3208007	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Allergic disease (asthma, hay fever or eczema)	25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	20q13.33	ARFRP1, LIME1, RTEL1, SLC2A4RG, STMN3, TNFRSF6B, ZBTB46, ZGPAT	rs3208007-?	NR	3E-8		1.0752687	[1.04-1.1]	Affymetrix [74888535] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	20q13.33	RTEL1	rs6011033-G	0.77	8E-11				NR [> 9500000] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	20q13.33	RTEL1	rs6011033-G	0.765899	1E-12		1.0523194	1.0376788120964-1.06716665904346]	NR [9572556] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	20q13.33	RTEL1, TNFRSF6B	rs6011033-A	0.2318	7E-9				Affymetrix [15688218] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	20q13.33	NR	rs6011033-G	0.7682	1E-11		1.0454783	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	20q13.33		rs6011033-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1060	chr20	62322698	62322699	rs6011033	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	20q13.33	RTEL1	rs6011033-G	0.78	4E-14		1.047	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
1060	chr20	62322895	62322896	rs80132799	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	20q13.33	NR	rs80132799-T	0.0682546	2E-9		0.0787672	[0.052-0.106] unit increase	Affymetrix [17914406] (imputed)	N
1060	chr20	62323005	62323006	rs2236507	26424050	Kinnersley B	2015-10-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for glioma.	Glioma	1,783 Northern European ancestry glioblastoma cases,  2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls	1,490 European ancestry cases, 1,723 European ancestry control	20q13.33	NR	rs2236507-C	NR	9E-11		1.2658228	[1.18-1.35]	Illumina [at least 8427548] (imputed)	N
1060	chr20	62324390	62324391	rs41308092	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	20q13.33	RTEL1	rs41308092-A	0.021	2E-10		1.82	[1.51-2.19]	Affymetrix, Illumina [10790934] (imputed)	N
1060	chr20	62324608	62324609	rs139221232	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	20q13.33	RTEL1	rs139221232-T	0.188	6E-7				Illumina [239042]	N
1060	chr20	62327581	62327582	rs2297441	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	20q13.33	TNFRSF6B, SLC2A4RG, STMN3, ZBTB46, ZGPAT, RTEL1	rs2297441-A	0.77	2E-10		1.09	[1.04-1.15]	Affymetrix, Illumina [~ 1100000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	2E-15		0.0349	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	3E-11		0.0291	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	7E-11		0.0285	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	1E-11		0.0296	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	4E-16		0.0357	[0.027-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1060	chr20	62328374	62328375	rs2738787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	20q13.33	NR	rs2738787-G	NR	9E-11		0.0284	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
1060	chr20	62328741	62328742	rs909341	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Atopic dermatitis	2,079 European ancestry cases, 3,867 European ancestry controls	NA	20q13.33	TNFRSF6B	rs909341-G	NR	8E-10		1.316	[1.205-1.429]	Affymetrix, Illumina, Perlegen [up to 5493100] (imputed)	N
1060	chr20	62328741	62328742	rs909341	23727859	Ellinghaus D	2013-06-02	Nat Genet	High-density genotyping study identifies four new susceptibility loci for atopic dermatitis.	Atopic dermatitis	2,425 European ancestry cases, 5,449 European ancestry controls	1,951 European ancestry cases, 4,599 European ancestry controls	20q13.33	TNFRSF6B	rs909341-G	0.774	8E-17		1.2987013		Illumina [128830]	N
1060	chr20	62329098	62329099	rs6062496	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	20q13.33	TNFRSF6B, ARFRP1, LIME1, RP4-583P15.14, STMN3, RTEL1, RTEL1-TNFRSF6B, ZGPAT, RP4-583P15.15, SLC2A4RG, ZBTB46	rs6062496-?		9E-17				Illumina [9578670] (imputed)	N
1060	chr20	62329098	62329099	rs6062496	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	20q13.33	TNFRSF6B, ARFRP1, LIME1, RP4-583P15.14, STMN3, RTEL1, RTEL1-TNFRSF6B, ZGPAT, RP4-583P15.15, SLC2A4RG, ZBTB46	rs6062496-?		3E-26				Illumina [9725440] (imputed)	N
1060	chr20	62329098	62329099	rs6062496	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	20q13.33	TNFRSF6B, ARFRP1, LIME1, RP4-583P15.14, STMN3, RTEL1, RTEL1-TNFRSF6B, ZGPAT, RP4-583P15.15, SLC2A4RG, ZBTB46	rs6062496-?		3E-13				Illumina [9560910] (imputed)	N
1060	chr20	62329098	62329099	rs6062496	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	20q13.33	TNFRSF6B	rs6062496-?	NR	2E-30	(subset analysis)			Illumina [130052]	N
1060	chr20	62329098	62329099	rs6062496	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.33	NR	rs6062496-?	NR	2E-33	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
1060	chr20	62330913	62330914	rs562526020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	20q13.33	ARFRP1	rs562526020-T	0.00438099999999997	6E-10		0.1124092	[0.077-0.148] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr20	62330913	62330914	rs562526020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	20q13.33	ARFRP1	rs562526020-T	0.004382	6E-9		0.105789736	[0.07-0.141] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr20	62333021	62333022	rs1623866	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	20q13.33	NR	rs1623866-?	NR	9E-6				Affymetrix [10894596] (imputed)	N
1060	chr20	62336257	62336258	rs6062497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	20q13.33		rs6062497-T	NR	1E-14		0.0158	[0.012-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1060	chr20	62336257	62336258	rs6062497	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	20q13.33		rs6062497-T	NR	9E-21		0.0208	[0.016-0.025] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1060	chr20	62336257	62336258	rs6062497	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	20q13.33	ZGPAT	rs6062497-T	0.665712482639392	8E-6		0.0025325	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1060	chr20	62336333	62336334	rs1758206	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	20q13.33	ZGPAT, LIME1	rs1758206-C	0.8245	2E-9		6.043	NR z score increase	Illumina [26237160] (imputed)	N
1060	chr20	62336333	62336334	rs1758206	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	20q13.33	ARFRP1	rs1758206-T	0.082	2E-8		0.546	[0.17-0.92] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1060	chr20	62337405	62337406	rs6011040	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	20q13.33	ARFRP1	rs6011040-?		2E-13				Illumina [5041948] (imputed)	N
1060	chr20	62337405	62337406	rs6011040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6011040-G	0.612218	2E-10				Affymetrix, Illumina [24649327] (imputed)	N
1060	chr20	62337405	62337406	rs6011040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6011040-G	0.634381	1E-16				Affymetrix, Illumina [23114412] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	20q13.33	ZGPAT, ARFRP1	rs6062498-G	0.665659	2E-15		0.018998703	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6062498-G	0.611408	8E-19				Affymetrix, Illumina [24588908] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	20q13.33	NR	rs6062498-G	0.665456	4E-21		0.018607	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	20q13.33	ZGPAT	rs6062498-C	0.335334	5E-6		0.150196	[0.086-0.215] unit decrease	Affymetrix [9463307] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	20q13.33	ZGPAT	rs6062498-C	0.335334	3E-6		0.00449944	[0.0026-0.0064] unit increase	Affymetrix [9463307] (imputed)	N
1060	chr20	62339058	62339059	rs6062498	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	20q13.33	NR	rs6062498-G	0.666	1E-10		0.00993772	[0.0069-0.013] unit decrease	NR [9732723] (imputed)	N
1060	chr20	62340114	62340115	rs1291212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	20q13.33		rs1291212-G	NR	4E-11		0.0277	[0.019-0.036] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1060	chr20	62342467	62342468	rs3761123	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	20q13.33	NR	rs3761123-A	0.683	9E-14		0.0123519	[0.0091-0.0156] unit increase	NR [9732723] (imputed)	N
1060	chr20	62343163	62343164	rs2750482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	20q13.33	NR	rs2750482-C	0.243255	5E-20		0.020539	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1060	chr20	62343955	62343956	rs2315008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	20q13.33	NR	rs2315008-G	0.666951	2E-15		0.016403	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1060	chr20	62343955	62343956	rs2315008	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	20q13.33	ZGPAT	rs2315008-T	0.31	5E-10		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
1060	chr20	62343955	62343956	rs2315008	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	20q13.33	TNFRSF6B	rs2315008-G	0.69	9E-15		1.36	[1.05-1.76]	Illumina [NR]	N
1060	chr20	62344139	62344140	rs2315009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	20q13.33		rs2315009-G	NR	6E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1060	chr20	62346458	62346459	rs2259858	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	20q13.33	BHLHE23, HELZ2, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, PRPF6, SOX18	rs2259858-?		1E-14				Affymetrix, Illumina [NR] (imputed)	N
1060	chr20	62347188	62347189	rs62217798	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	20q13.33	TNFRSF6B	rs62217798-T	0.784	1E-12	(Tumor necrosis factor receptor superfamily member 6B, TNFRSF6B.5070.76.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	20q13.33		rs62217799-T	0.66	5E-15		0.016	nmol/L decrease	NR [NR] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	20q13.33		rs62217799-T	0.66	3E-16				NR [NR] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	20q13.33		rs62217799-T	0.66	2E-10		0.011	mmol/L decrease	NR [NR] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	20q13.33		rs62217799-T	0.66	9E-16		0.013	% increase	NR [NR] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	20q13.33	NR	rs62217799-G	0.342384	2E-15		0.00659973	[0.0048-0.0083] unit increase	Affymetrix [16582909] (imputed)	N
1060	chr20	62347190	62347191	rs62217799	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	20q13.33	NR	rs62217799-G	0.342384	2E-17		0.00831447	[0.0064-0.0103] unit increase	Affymetrix [16582965] (imputed)	N
1060	chr20	62348189	62348190	rs4809327	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	20q13.33		rs4809327-T	NR	2E-11		0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1060	chr20	62348326	62348327	rs4809328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	20q13.33		rs4809328-T	NR	5E-12		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1060	chr20	62348906	62348907	rs6062504	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.33	NR	rs6062504-G	0.69	1E-8	(EA)	1.0814869		Affymetrix, Illumina [~ 9000000] (imputed)	N
1060	chr20	62348906	62348907	rs6062504	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	20q13.33	NR	rs6062504-G	0.69	8E-17	(EA)	1.1168494	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1060	chr20	62348906	62348907	rs6062504	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	20q13.33	LIME1, TNFRSF6B, SLC2A4RG, ZGPAT	rs6062504-G	0.684	1E-23		1.104	[1.071-1.139]	Affymetrix, Illumina [1230000] (imputed)	N
1060	chr20	62349585	62349586	rs4809330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	20q13.33	ZGPAT, RP4-583P15.15	rs4809330-G	0.667523	3E-14		0.018506201	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62349585	62349586	rs4809330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	20q13.33	ZGPAT, RP4-583P15.15	rs4809330-G	0.667796	2E-13		0.017264929	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62349585	62349586	rs4809330	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	20q13.33	SLC2A4RG, TNFRS-F6B, RTEL1	rs4809330-G	0.709	3E-15		1.12	[1.06-1.18]	Affymetrix, Illumina [953241] (imputed)	N
1060	chr20	62350412	62350413	rs2738759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	20q13.33		rs2738759-G	NR	1E-8		0.0232	[0.015-0.031] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1060	chr20	62351538	62351539	rs6062304	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	20q13.33	ZGPAT, RP4-583P15.15	rs6062304-T	0.673917	7E-20		0.021516526	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1060	chr20	62353932	62353933	rs2261092	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.33	ZGPAT	rs2261092-A	0.0745	4E-11		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1060	chr20	62354493	62354494	rs7262150	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	20q13.33		rs7262150-T	0.761903	2E-8		0.0267688	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1060	chr20	62355755	62355756	rs1758205	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	20q13.33	NR	rs1758205-G	0.756998	3E-10		0.013852	[0.0095-0.0182] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1060	chr20	62362562	62362563	rs6062509	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	20q13.33	ZGPAT, RP4-583P15.15	rs6062509-T	0.674168	9E-16		0.01895038	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1060	chr20	62362562	62362563	rs6062509	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	20q13.33	ZGPAT	rs6062509-T	0.389	4E-6		1.1223345	NR	Illumina [7742602] (imputed)	N
1060	chr20	62362562	62362563	rs6062509	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	20q13.33	NR	rs6062509-T	0.7	3E-18		1.08	[1.06-1.10]	Illumina [20370935] (imputed)	N
1060	chr20	62362562	62362563	rs6062509	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	20q13.33	STMN3, ZBTB46, ZGPAT, ABHD16B, ARFRP1, C20orf195, DNAJC5, EEF1A2, GMEB2, LIME1, LOC100505815, MIR1914, MIR647, MIR941-1, MIR941-2, MIR941-3, MIR941-4, PPDPF, PRIC285, PRPF6, PTK6, RTEL1, RTEL1-TN, RTEL1-TNFRSF6B, SAMD10, SRMS, TNFRSF6B, TPD52L2, UCKL1, SLC2A4RG, UCKL1-AS1, ZNF512B	rs6062509-A	0.7	4E-16		1.12	[1.09-1.16]	Illumina [~ 2600000] (imputed)	N
1060	chr20	62363511	62363512	rs56057703	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	20q13.33		rs56057703-T	NR	1E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1060	chr20	62363511	62363512	rs56057703	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs56057703-T	0.134534	8E-11				Affymetrix, Illumina [24558453] (imputed)	N
1060	chr20	62363543	62363573	rs531017143	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		20q13.33	ZGPAT, LIME1, SLC2A4RG	rs531017143-TTGGG	NR	4E-11		0.01132	[0.0061-0.0165] nmol/l decrease	NR [19000000] (imputed)	N
1060	chr20	62363640	62363642	rs72448466	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	20q13.33	ZGPAT	rs72448466-?	0.6728	4E-13		0.03	[0.022-0.038] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1060	chr20	62363649	62363651	rs56046298	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	20q13.33	LIME1	rs56046298-?	0.3251	2E-8		0.86459	NR	Affymetrix, Illumina [30341632] (imputed)	N
1060	chr20	62370348	62370349	rs1056441	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs1056441-T	0.326728	4E-24		0.0225404	[0.018-0.027] unit decrease	NR [NR]	N
1060	chr20	62370348	62370349	rs1056441	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	20q13.33	TNFRSF6B	rs1056441-C	0.60890625	2E-8	(TNFRSF6B, 5070_76_3)	0.14123182	[0.092-0.19] unit decrease	Illumina [> 1000000] (imputed)	N
1060	chr20	62372040	62372041	rs1741708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	20q13.33		rs1741708-T	NR	3E-8		0.0434	[0.028-0.059] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1060	chr20	62372147	62372148	rs6062510	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	20q13.33	SLC2A4RG	rs6062510-G	0.325588	4E-13		0.015191	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1060	chr20	62372705	62372706	rs4809221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	20q13.33		rs4809221-A	NR	3E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1060	chr20	62372705	62372706	rs4809221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.33	NR	rs4809221-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1060	chr20	62372705	62372706	rs4809221	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	20q13.33	SLC2A4RG	rs4809221-A	0.6753	6E-31		0.0291	[0.024-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1060	chr20	62372705	62372706	rs4809221	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	20q13.33	SLC2A4RG	rs4809221-A	0.6753	2E-26		0.0266	[0.022-0.031] unit decrease	Affymetrix [19819130] (imputed)	N
1060	chr20	62372705	62372706	rs4809221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.33		rs4809221-?	NR	4E-36				NR [~ 8900000] (imputed)	N
1060	chr20	62372955	62372956	rs2253823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs2253823-T	0.304107	3E-18				Affymetrix, Illumina [20825802] (imputed)	N
1060	chr20	62373982	62373983	rs2256814	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q13.33	SLC2A4RG	rs2256814-G	0.802121	7E-9		0.0152271	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1060	chr20	62373982	62373983	rs2256814	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q13.33	SLC2A4RG	rs2256814-G	0.802084	3E-8		0.0144642	[0.0093-0.0196] unit decrease	Affymetrix [NR] (imputed)	N
1060	chr20	62373982	62373983	rs2256814	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	20q13.33	SLC2A4RG	rs2256814-A	0.21	4E-9		1.09		Illumina [161311]	N
1060	chr20	62374388	62374389	rs1058319	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	20q13.33	NR	rs1058319-C	0.863990161	3E-6		1.1354545	[1.08-1.20]	Affymetrix, Illumina [20400945] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	20q13.33	NR	rs1058319-C	NR	1E-29		1.117	[1.10-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	20q13.33	NR	rs1058319-C	0.425	4E-9		1.114	[1.07-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	20q13.33	NR	rs1058319-T	0.13521300000000003	2E-8		0.024331	[0.015-0.033] unit increase	Affymetrix [16577313] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	20q13.33	NR	rs1058319-T	0.13499399999999995	9E-10		0.00965271	[0.0063-0.0131] unit increase	Affymetrix [16582621] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	20q13.33	NR	rs1058319-T	0.13499399999999995	2E-7		0.00922573	[0.0056-0.0129] unit increase	Affymetrix [16582614] (imputed)	N
1060	chr20	62374388	62374389	rs1058319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs1058319-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1060	chr20	62374440	62374441	rs6742	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	20q13.33	SLC2A4RG	rs6742-C	NR	4E-14		1.1492	NR	Affymetrix, Illumina [8278136] (imputed)	N
1060	chr20	62379445	62379445	rs73625081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	20q13.33		rs73625081-CCT	NR	2E-13		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1060	chr20	62379530	62379531	rs11697610	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	20q13.33	ZBTB46	rs11697610-G	0.387	2E-8	(EA)	0.012	[0.0081-0.0159] unit increase	NR [12082474] (imputed)	N
1060	chr20	62379749	62379750	rs2315646	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	20q13.33	ARFRP1, LIME1, RTEL1, RTEL1-TNFRSF6B, SLC2A4RG, TNFRSF6B, ZBTB46, ZGPAT	rs2315646-G	0.341152	3E-9		1.03859	[1.03-1.05]	Affymetrix [8274727] (imputed)	N
1060	chr20	62380526	62380527	rs932827	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20q13.33	ZBTB46	rs932827-T	0.238041	3E-10		0.037432	[0.026-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1060	chr20	62381978	62381979	rs6089970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	20q13.33		rs6089970-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1060	chr20	62387093	62387094	rs4809335	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	20q13.33	SLC2A4RG, LIME1, ZBTB46	rs4809335-?	NR	7E-9	(female)	0.0193129	[0.013-0.026] unit increase	Affymetrix [25921788] (imputed)	N
1061	chr20	62398824	62398825	rs6011097	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	20q13.33		rs6011097-?	NR	3E-8		0.881184	[0.84-0.93]	NR [680312]	N
1061	chr20	62398824	62398825	rs6011097	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	20q13.33	NR	rs6011097-A	NR	1E-12		0.0216	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1061	chr20	62404984	62404985	rs73916646	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	20q13.33	NR	rs73916646-T	0.01394	8E-9	(C4B)	0.6109	NR unit increase	Illumina [1671387] (imputed)	N
1061	chr20	62406885	62406886	rs3810496	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	20q13.33	NR	rs3810496-C	0.619	4E-12		0.00794303	[0.0057-0.0102] unit increase	NR [9732723] (imputed)	N
1061	chr20	62406885	62406886	rs3810496	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	20q13.33	NR	rs3810496-C	0.619436	2E-9	(Conditioned on chr20:61984317)	0.015881294	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1061	chr20	62409712	62409713	rs6062314	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or multiple sclerosis	741 European ancestry marginal zone lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 23,367 European ancestry controls	NA	20q13.33	ZBTB46	rs6062314-?	NR	2E-8		1.1615751		Illumina [~ 460000] (imputed)	N
1061	chr20	62409712	62409713	rs6062314	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	20q13.33	ZBTB46	rs6062314-A	NR	1E-7		1.16	[1.14-1.19]	Illumina [465434]	N
1061	chr20	62413992	62413993	rs6011111	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	20q13.33	ZBTB46	rs6011111-C	NR	2E-7		0.08	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
1061	chr20	62413992	62413993	rs6011111	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	20q13.33	ZBTB46	rs6011111-C	NR	8E-7				Affymetrix, Illumina [12061510] (imputed)	N
1061	chr20	62413992	62413993	rs6011111	30944420	Liu L	2019-04-03	Int J Obes (Lond)	Identification of a 1p21 independent functional variant for abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	8,736 European ancestry individuals, 1,541 East Asian ancestry individuals, 445 Hispanic ancestry individuals, 847 African-American ancestry individuals	NA	20q13.33		rs6011111-?	NR	1E-7				Affymetrix, Illumina [12061510] (imputed)	N
1061	chr20	62418242	62418243	rs6010651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	20q13.33		rs6010651-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1061	chr20	62418336	62418337	rs2315656	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	20q13.33	ZBTB46	rs2315656-G	0.395	4E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1061	chr20	62422079	62422080	rs2281929	34276655	Wen S	2021-07-01	Front Immunol	Identification of Two Novel Candidate Genetic Variants Associated With the Responsiveness to Influenza Vaccination.	Response to influenza vaccine	34 Chinese ancestry responders, 77 Chinese ancestry non-responders	193 Chinese ancestry responders, 288 Chinese ancestry non-responders			rs2281929-C	NR	1E-6	(dominant model)	0.423	[0.299-0.599]	NR [13013995]	N
1061	chr20	62422503	62422504	rs76484331	33723576	Carrera C	2021-03-16	Brain	Single nucleotide variations in ZBTB46 are associated with post-thrombolytic parenchymal haematoma.	Parenchymal hematoma in thrombolytic-treated acute ischaemic stroke	71 European ancestry cases, 1,253 European ancestry controls	70 European ancestry cases, 510 European ancestry controls	20q13.33		rs76484331-A	0.1	2E-8		5.84	[3.16-10.76]	Illumina [7989272] (imputed)	N
1061	chr20	62423776	62423776	rs147656985	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	20q13.33	ZBTB46	rs147656985-?	NR	1E-9		0.0153775	[0.01-0.02] unit increase	Affymetrix [25921788] (imputed)	N
1061	chr20	62431823	62431824	rs71325468	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	20q13.33		rs71325468-G	0.977086	2E-7		1.4725	NR	Affymetrix [7846216] (imputed)	N
1061	chr20	62434141	62434142	rs4809346	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	20q13.33	ZBTB46	rs4809346-T	0.842354	1E-9		0.0179059	[0.012-0.024] unit decrease	NR [16516521] (imputed)	N
1061	chr20	62436397	62436398	rs73624724	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	20q13.33	RTEL1, ZBTB46	rs73624724-C	0.13	6E-12		0.051	[0.037-0.065] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1061	chr20	62441598	62441599	rs6062322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.33	RP4-583P15.11, ZBTB46	rs6062322-T	0.188367	3E-10		0.0200991	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1061	chr20	62441598	62441599	rs6062322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.33		rs6062322-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1061	chr20	62443778	62443779	rs6062536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	20q13.33		rs6062536-A	NR	9E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1061	chr20	62443778	62443779	rs6062536	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	20q13.33	RP4-583P15.11	rs6062536-A	0.233334	1E-8		0.053996745	[0.035-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
1061	chr20	62445701	62445702	rs73143584	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q13.33	ZBTB46	rs73143584-A	0.110347	2E-11		0.028776	[0.02-0.037] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1061	chr20	62445701	62445702	rs73143584	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	20q13.33	LOC101928604, ZBTB46	rs73143584-A	0.102	2E-6		0.056	[0.032-0.08] unit decrease	Affymetrix [7947838] (imputed)	N
1061	chr20	62446568	62446569	rs1887407	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	20q13.33		rs1887407-?	NR	6E-9		0.0244575	[0.016-0.033] unit increase	NR [6912294] (imputed)	N
1061	chr20	62447326	62447327	rs28637955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	20q13.33		rs28637955-G	NR	1E-8		0.067	[0.044-0.09] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1061	chr20	62447661	62447662	rs4809361	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	20q13.33	NR	rs4809361-C	0.787732	8E-17		0.020082	[0.015-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1061	chr20	62449319	62449320	rs6062541	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	20q13.33	NR	rs6062541-T	0.23	1E-10		0.024	[0.016-0.032] z score increase	Affymetrix [up to 10400000] (imputed)	N
1061	chr20	62450663	62450664	rs6011155	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	20q13.33	NR	rs6011155-C	0.4137	6E-13		0.0284	[0.021-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1061	chr20	62450663	62450664	rs6011155	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	20q13.33	ZBTB46	rs6011155-T	0.6297	6E-6		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1061	chr20	62454074	62454075	rs73145513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	20q13.33		rs73145513-T	NR	2E-8		0.0272	[0.018-0.037] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1061	chr20	62461304	62461305	rs4809367	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	20q13.33		rs4809367-T	NR	2E-7		1.0869565	[1.05-1.12]	Affymetrix [7846216] (imputed)	N
1061	chr20	62461571	62461572	rs8118848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	20q13.33		rs8118848-A	NR	2E-10		0.0479	[0.033-0.063] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1061	chr20	62461571	62461572	rs8118848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	20q13.33		rs8118848-A	NR	3E-19		0.0554	[0.043-0.068] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1061	chr20	62461571	62461572	rs8118848	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.33	ZBTB46	rs8118848-A	0.236442	4E-17		0.059723947	[0.046-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
1061	chr20	62470103	62470104	rs6090008	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	20q13.33		rs6090008-T	0.443186	2E-8		0.0185353	[0.012-0.025] unit increase	Illumina [13479135] (imputed)	N
1061	chr20	62470103	62470104	rs6090008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	20q13.33	NR	rs6090008-C	0.554232	2E-10		0.025939	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1061	chr20	62470784	62470785	rs4809369	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	20q13.33	NR	rs4809369-G	0.5548	4E-13		0.0337	[0.025-0.043] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1061	chr20	62474184	62474185	rs8121155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.33	NR	rs8121155-C	NR	2E-10		0.0304	[0.021-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1061	chr20	62474184	62474185	rs8121155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs8121155-C	NR	2E-9		0.0288	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1061	chr20	62474184	62474185	rs8121155	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	20q13.33	NR	rs8121155-C	NR	4E-9		0.0282	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1061	chr20	62475602	62475603	rs2427538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	20q13.33		rs2427538-T	NR	3E-13		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1061	chr20	62475602	62475603	rs2427538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	20q13.33	AL158091.1	rs2427538-T	0.607956	7E-13		0.016226506	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1061	chr20	62475602	62475603	rs2427538	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	20q13.33	AL158091.1	rs2427538-T	0.607953	1E-9		0.013726918	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1061	chr20	62475602	62475603	rs2427538	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs2427538-T	0.592253	4E-18				Affymetrix, Illumina [24332387] (imputed)	N
1061	chr20	62475880	62475881	rs2427539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	20q13.33		rs2427539-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1061	chr20	62481350	62481351	rs73149487	32981348	Klarin D	2020-09-28	Circulation	Genetic Architecture of Abdominal Aortic Aneurysm in the Million Veteran Program.	Abdominal aortic aneurysm	7,642 European ancestry cases, 172,172 European ancestry controls	2,835 European ancestry cases, 107,469 European ancestry controls	20q13.33	ABHD16B	rs73149487-G	0.9572	8E-9		1.26	1.16-1.36	Affymetrix [18689289] (imputed)	N
1061	chr20	62483183	62483184	rs56103247	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	20q13.33	NR	rs56103247-?		4E-10		0.0297647	[0.02-0.039] unit increase	Affymetrix [19400418] (imputed)	N
1061	chr20	62483909	62483910	rs2478981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.33		rs2478981-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1061	chr20	62483910	62483911	rs1923031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.33		rs1923031-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1061	chr20	62483992	62483993	rs1923032	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	20q13.33		rs1923032-G	0.696938	2E-9		0.014881152	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1061	chr20	62484007	62484008	rs6011186	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	20q13.33		rs6011186-T	NR	3E-10		0.9	[0.87-0.93]	NR [13810676] (imputed)	N
1061	chr20	62497262	62497263	rs8122498	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	20q13.33	C20orf135	rs8122498-?	NR	5E-6	(orotic acid)	0.31154826	[0.18-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
1062	chr20	62529698	62529699	rs6011208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	20q13.33	DNAJC5	rs6011208-T	0.049149	3E-11		0.034838896	[0.025-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1062	chr20	62544257	62544258	rs6062576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.33	DNAJC5	rs6062576-T	0.041534	1E-13		0.041625477	[0.031-0.053] unit increase	Affymetrix [93095623] (imputed)	N
1062	chr20	62554812	62554813	rs73136572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.33	DNAJC5	rs73136572-C	0.04163	6E-29		0.063022725	[0.052-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1062	chr20	62558233	62558234	rs6011229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.33	DNAJC5	rs6011229-G	0.157161	5E-15		0.024413867	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr20	62558233	62558234	rs6011229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs6011229-A	0.842838	3E-22				Affymetrix, Illumina [17210439] (imputed)	N
1062	chr20	62558233	62558234	rs6011229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	20q13.33	NR	rs6011229-A	0.842466	2E-24		0.027052	[0.022-0.032] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1062	chr20	62567683	62567684	rs55886426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.33	NR	rs55886426-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1062	chr20	62582463	62582464	rs2320225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	20q13.33		rs2320225-G	NR	3E-11		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1062	chr20	62586261	62586262	rs817318	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	20q13.33	NR	rs817318-T	0.6	2E-8		0.0107	[0.0069-0.0145] unit decrease	NR [NR]	N
1062	chr20	62592902	62592903	rs79864192	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.33	UCKL1-AS1	rs79864192-T	0.829112	2E-14		0.00228754	[0.0017-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1062	chr20	62596204	62596205	rs1093455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	20q13.33	ZNF512B	rs1093455-G	0.577971	6E-9		0.013577232	[0.009-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1062	chr20	62597693	62597694	rs817329	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	20q13.33	ZNF512B	rs817329-T	0.406239	2E-6		0.014853	[0.0088-0.0209] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1062	chr20	62597693	62597694	rs817329	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	20q13.33	ZNF512B	rs817329-T	0.40588	2E-9		0.01565	[0.011-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1062	chr20	62601385	62601386	rs566593771	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	20q13.33	NA	rs566593771-C	0.839529	9E-14		0.00228428	[0.0017-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1062	chr20	62602061	62602062	rs79903344	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	20q13.33	ZNF512B, SAMD10	rs79903344-T	0.72	5E-10		6.21	z-score increase	Affymetrix [4311822] (imputed)	N
1062	chr20	62606616	62606617	rs41278232	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	20q13.33	SAMD10	rs41278232-G	0.89	8E-9		1.08	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
1062	chr20	62606616	62606617	rs41278232	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	20q13.33	SAMD10	rs41278232-?	NR	8E-9		1.078	[1.051-1.107]	Illumina [13757430] (imputed)	N
1062	chr20	62633236	62633237	rs758794928	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	20q13.33	PRPF6	rs758794928-T	0.0019	2E-6		0.5368	[0.32-0.76] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1063	chr20	62670426	62670427	rs76145129	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	20q13.33	NR	rs76145129-G	0.8762	3E-8		1.0515248	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1063	chr20	62675409	62675410	rs73153160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	20q13.33		rs73153160-A	NR	2E-11		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1063	chr20	62676008	62676009	rs816943	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	20q13.33	NR	rs816943-G	0.48	2E-10		0.094	[0.065-0.123] unit decrease	Affymetrix [10972371] (imputed)	N
1063	chr20	62682528	62682529	rs6062618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	20q13.33		rs6062618-G	NR	1E-18		0.1073	[0.083-0.131] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1063	chr20	62683264	62683265	rs6062621	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20q13.33	chr20mb62	rs6062621-C	0.112233004	1E-7		0.2475	[0.16-0.34] unit increase	Affymetrix [~ 9800000] (imputed)	N
1063	chr20	62686201	62686202	rs816949	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	20q13.33		rs816949-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1063	chr20	62690682	62690683	rs2105063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	TCEA2	rs2105063-C	NR	6E-10		0.0176227	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62690682	62690683	rs2105063	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.33	TCEA2	rs2105063-C	NR	6E-10		0.017659	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62691312	62691313	rs1335579	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	20q13.33	NR	rs1335579-G	NR	8E-12		0.0231	[0.016-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1063	chr20	62691549	62691550	rs6512302	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	20q13.33	NR	rs6512302-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1063	chr20	62691549	62691550	rs6512302	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	20q13.33	TCEA2	rs6512302-C	0.7461	3E-8		0.012388765	[0.008-0.0168] unit decrease	Illumina [9339358] (imputed)	N
1063	chr20	62691549	62691550	rs6512302	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	20q13.33	NA	rs6512302-C	0.7391	2E-11		0.0134	[0.0095-0.0173] unit increase	NR [~ 27400000] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	20q13.33		rs6090040-A	0.480014	2E-8		0.0226672	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	20q13.33		rs6090040-A	0.480014	1E-8		0.0229789	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	20q13.33		rs6090040-A	0.480014	3E-8		0.0225606	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	20q13.33		rs6090040-A	0.480014	2E-8		0.0226847	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	20q13.33	TCEA2	rs6090040-A	NR	3E-8		0.016439	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	20q13.33	NR	rs6090040-A	0.478913	8E-19		0.0170833	[0.013-0.021] unit increase	Affymetrix [15000001]	N
1063	chr20	62692059	62692060	rs6090040	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	20q13.33	TCEA2	rs6090040-?	NR	1E-8		0.0146	[0.01-0.019] unit increase	Affymetrix [5701386] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	20q13.33	TCEA2	rs6090040-C	NR	3E-8	(EA)			Affymetrix [at least 723305] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q13.33	TCEA2	rs6090040-A	0.4804	4E-18		0.2159	[0.17-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	20q13.33	NR	rs6090040-A	0.4804	2E-7		0.0103	[0.0064-0.0142] unit increase	NR [~ 27400000] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.33	TCEA2	rs6090040-A		1E-9		0.265	unit increase	Affymetrix [at least 2696785] (imputed)	N
1063	chr20	62692059	62692060	rs6090040	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	20q13.33	TCEA2	rs6090040-A		3E-7		0.15	unit increase	Affymetrix [at least 2696785] (imputed)	N
1063	chr20	62692439	62692440	rs7264802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	20q13.33		rs7264802-G	NR	6E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1063	chr20	62692439	62692440	rs7264802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	20q13.33	TCEA2	rs7264802-G	0.748076	2E-9		0.015372168	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1063	chr20	62692439	62692440	rs7264802	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	20q13.33	NR	rs7264802-G	0.748623	1E-10		0.015292	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1063	chr20	62692439	62692440	rs7264802	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		20q13.33	TCEA2	rs7264802-A	0.251739	7E-10		0.00980735	[0.0067-0.0129] unit decrease	Affymetrix [12370749]	N
1063	chr20	62693174	62693175	rs59944054	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes (adjusted for BMI)	50,409 European ancestry cases, 523,897 European ancestry controls	NA	20q13.33	TCEA2	rs59944054-A	0.2382	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1063	chr20	62693377	62693378	rs57642905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	TCEA2	rs57642905-T	NR	2E-8		0.0185459	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62693377	62693378	rs57642905	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.33	TCEA2	rs57642905-T	NR	4E-9		0.0194863	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62693377	62693378	rs57642905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	20q13.33		rs57642905-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1063	chr20	62694318	62694319	rs35213536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	TCEA2	rs35213536-T	NR	3E-8		0.0182086	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62695930	62695931	rs6062343	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	20q13.33	TCEA2	rs6062343-A	NR	1E-18		0.017738134	[0.014-0.022] unit decrease	Illumina [242289]	N
1063	chr20	62695930	62695931	rs6062343	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	20q13.33	NR	rs6062343-A	0.44	1E-9		0.019	unit decrease	Illumina [242289]	N
1063	chr20	62695930	62695931	rs6062343	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	20q13.33	NR	rs6062343-A	0.44	1E-6		0.016	unit decrease	Illumina [242289]	N
1063	chr20	62696023	62696024	rs6062344	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	20q13.33	NR	rs6062344-T	0.4994	6E-16		0.0149	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1063	chr20	62696023	62696024	rs6062344	25436638	Malinowski JR	2014-12-01	PLoS One	Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.	Serum thyroid-stimulating hormone levels	4,501 European ancestry individuals, 351 African American individuals	NA	20q13.33	TCEA2	rs6062344-T	0.4	4E-6	(AA)	0.18	[0.1-0.26] unit increase	Illumina [up to 905285]	N
1063	chr20	62696999	62697000	rs28638160	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	20q13.33	TCEA2	rs28638160-?	NR	4E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [21347608] (imputed)	N
1063	chr20	62696999	62697000	rs28638160	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	20q13.33	TCEA2	rs28638160-?	NR	2E-9		0.0034	[0.0024-0.0044] unit increase	Affymetrix [21347608] (imputed)	N
1063	chr20	62703790	62703791	rs6011278	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	20q13.33	NR	rs6011278-C	0.074772	7E-11		0.024557	[0.017-0.032] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1063	chr20	62705806	62705807	rs111477741	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	20q13.33	RGS19, SAMD10, PRPF6, LINC00176, SOX18, TCEA2, OPRL1, C20orf201, NPBWR2, MYT1	rs111477741-T	0.05	3E-7		1.27	[0.78-1.76] unit decrease	Illumina [8257341] (imputed)	N
1063	chr20	62706104	62706105	rs4408777	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	20q13.33	RGS19	rs4408777-A	0.5139	1E-13		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1063	chr20	62706104	62706105	rs4408777	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	20q13.33	RGS19	rs4408777-A	0.51	2E-6		1.0388	[1.0224-1.0554]	Affymetrix, Illumina [9585923] (imputed)	N
1063	chr20	62707234	62707239	rs146216988	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	20q13.33	RGS19	rs146216988-C	0.7644	2E-14		0.3262	[0.24-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
1063	chr20	62707237	62707242	rs141039858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	20q13.33		rs141039858-C	NR	5E-13		0.0189	[0.014-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1063	chr20	62707237	62707242	rs141039858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	20q13.33		rs141039858-C	NR	6E-13		0.019	[0.014-0.024] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1063	chr20	62707237	62707242	rs141039858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	20q13.33		rs141039858-C	NR	4E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1063	chr20	62709273	62709274	rs12625329	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	20q13.33	RGS19	rs12625329-?	NR	2E-9		0.0305871	[0.021-0.041] unit decrease	Illumina [4804024] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	20q13.33		rs8126001-C	0.51154	7E-10		0.023974	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	2E-8		0.0220131	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	2E-8		0.0224353	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	3E-10		0.0252639	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	3E-8		0.0220903	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	4E-8		0.0215681	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	3E-10		0.0248204	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	20q13.33		rs8126001-C	0.511539	8E-11		0.0252704	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	20q13.33		rs8126001-T	NR	9E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antithrombotic agents)	67,653 European ancestry cases, 85,986 European ancestry controls, 54,220 East Asian ancestry cases, 124,506 East Asian ancestry controls	NA	20q13.33		rs8126001-T	NR	2E-8		0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	20q13.33		rs8126001-T	NR	2E-20		0.0453	[0.036-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	OPRL1	rs8126001-T	NR	4E-20		0.0260332	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.33	OPRL1	rs8126001-T	NR	1E-20		0.0264289	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.33	OPRL1	rs8126001-T	NR	1E-13		0.0212048	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.33	OPRL1	rs8126001-T	NR	2E-13		0.0210241	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	20q13.33	NR	rs8126001-T	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	20q13.33	OPRL1, RGS19	rs8126001-T	0.489809	1E-22		0.021998655	[0.018-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	20q13.33	OPRL1, RGS19	rs8126001-T	0.48995	1E-12		0.016136607	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	20q13.33	OPRL1, RGS19	rs8126001-T	0.489923	5E-15		0.0189266	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	20q13.33	OPRL1, RGS19	rs8126001-T	0.489865	2E-13		0.016260259	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	20q13.33	NR	rs8126001-T	0.523188	2E-19				Affymetrix, Illumina [24246363] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	20q13.33	NR	rs8126001-T	0.490334	2E-21		0.018227	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	20q13.33	OPRL1	rs8126001-C	0.510425	4E-16		0.0163141	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	20q13.33	OPRL1	rs8126001-C	0.510495	2E-9		0.0115713	[0.0078-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	20q13.33	OPRL1, MYT1	rs8126001-?	NR	9E-9		0.0151	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	20q13.33	NR	rs8126001-T	0.490077	2E-14		0.00953407	[0.007-0.0121] unit increase	Affymetrix [16578495] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	20q13.33	NR	rs8126001-T	0.48993	6E-13		0.0196947	[0.014-0.025] unit increase	Affymetrix [16580851] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs8126001-C	0.509936	6E-13		0.0145362	[0.011-0.018] unit increase	NR [NR]	N
1063	chr20	62711458	62711459	rs8126001	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	20q13.33	NR	rs8126001-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	20q13.33	NR	rs8126001-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	20q13.33	OPRL1	rs8126001-T	0.489093	1E-16		0.046777286	[0.036-0.058] unit decrease	Affymetrix [7288503] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	20q13.33		rs8126001-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	20q13.33		rs8126001-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	20q13.33		rs8126001-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	20q13.33	chr20mb62	rs8126001-T	0.488726381	1E-7		0.1786	[0.11-0.24] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1063	chr20	62711458	62711459	rs8126001	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	20q13.33	RGS19, OPRL1	rs8126001-T	0.489	8E-9		0.02044855	[0.014-0.027] unit increase	Affymetrix [~ 2500000] (imputed)	N
1063	chr20	62712052	62712053	rs8121509	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	20q13.33	OPRL1	rs8121509-C	0.451827	4E-8		0.0360691	[0.023-0.049] unit decrease	Affymetrix [9463307] (imputed)	N
1063	chr20	62713851	62713852	rs78388920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	20q13.33	OPRL1	rs78388920-A	0.053039	3E-9		0.029606752	[0.02-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1063	chr20	62713936	62713937	rs12106028	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	20q13.33	NR	rs12106028-?	NR	3E-6		4.672	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1063	chr20	62714025	62714026	rs6122051	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs6122051-T	0.2751	3E-8	(MTAG)	0.0102	[0.0065-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1063	chr20	62714782	62714783	rs6010717	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	OPRL1, C20orf201	rs6010717-C	NR	5E-8		0.0158886	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62727914	62727915	rs7271530	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	20q13.33		rs7271530-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1063	chr20	62729430	62729431	rs2229205	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	20q13.33	OPRL1	rs2229205-T	0.18	7E-6		0.04	[0.02-0.06] unit increase	Illumina [1632371] (imputed)	N
1063	chr20	62737511	62737512	rs75874947	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20q13.33	Intergenic	rs75874947-?		2E-7		1.12	[1.07-1.17]	Illumina [7645193] (imputed)	N
1063	chr20	62737511	62737512	rs75874947	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	20q13.33	Intergenic	rs75874947-?		1E-7		2.84	[1.93-4.19]	Illumina [7645193] (imputed)	N
1063	chr20	62737567	62737568	rs4809401	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	20q13.33	NPBWR2	rs4809401-T	0.87	8E-6		0.021	[0.012-0.03] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1063	chr20	62744944	62744945	rs2983443	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	20q13.33	intergenic	rs2983443-A	0.1363	4E-6		1.1466	NR	Affymetrix, Illumina [30341632] (imputed)	N
1063	chr20	62751119	62751120	rs6122248	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	20q13.33	NPBWR2	rs6122248-C	0.35001	4E-11		0.041884955	[0.029-0.054] unit increase	Affymetrix [7288503] (imputed)	N
1063	chr20	62761698	62761699	rs6062643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	20q13.33	MYT1	rs6062643-G	NR	5E-12		0.0192885	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62761698	62761699	rs6062643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	20q13.33	MYT1	rs6062643-G	NR	2E-12		0.0196551	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
1063	chr20	62761698	62761699	rs6062643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	20q13.33	MYT1	rs6062643-G	NR	4E-9		0.0165903	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1063	chr20	62761698	62761699	rs6062643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	20q13.33	MYT1	rs6062643-G	NR	9E-9		0.0162133	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
1063	chr20	62763250	62763251	rs11906570	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Schizoaffective disorder-bipolar type	977 European ancestry cases, 31,358 European ancestry controls	NA	20q13.33	NR	rs11906570-A	0.0212	7E-7		2.91276	[NR]	NR [9372253] (imputed)	N
1063	chr20	62775182	62775183	rs4809412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	20q13.33		rs4809412-C	0.31106508	5E-8		0.08452302	[0.054-0.115] unit increase	Illumina [13429513] (imputed)	N
1064	chr20	62791008	62791009	rs534109	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	20q13.33		rs534109-A	0.26	4E-11		6.6	z score increase	Affymetrix [9061022] (imputed)	N
1064	chr20	62793999	62794000	rs442083	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	20q13.33	NR	rs442083-C	0.2675	3E-9				NR [9056863] (imputed)	N
1064	chr20	62795404	62795405	rs365032	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	20q13.33	MYT1	rs365032-G	0.27	2E-18		1.11	[1.09-1.13]	Affymetrix, Illumina [15838848] (imputed)	N
1064	chr20	62795404	62795405	rs365032	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	20q13.33	MYT1	rs365032-G	0.27	2E-34		1.13	[1.11-1.15]	Affymetrix, Illumina [6864281] (imputed)	N
1064	chr20	62830801	62830802	rs3003137	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	20q13.33		rs3003137-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1064	chr20	62839709	62839710	rs61746505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	20q13.33	Intergenic	rs61746505-C	0.0478	2E-8	(MTAG)	0.0217	[0.014-0.029] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1064	chr20	62839709	62839710	rs61746505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	20q13.33	Intergenic	rs61746505-C	0.0485	6E-9	(MTAG)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1064	chr20	62858692	62858693	rs2273446	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	20q13.33	MYT1	rs2273446-G	0.1725	4E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix [~ 7740000] (imputed)	N
1064	chr20	62879330	62879331	rs6062356	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	20q13.33	NR	rs6062356-G	0.1495	3E-6	(EA)	0.0405	[0.023-0.058] unit increase	Illumina [~ 11800000] (imputed)	N
1064	chr20	62886503	62886504	rs6011368	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	20q13.33	PCMTD2	rs6011368-?	NR	8E-7	(AUC)			NR [2092490]	N
1064	chr20	62889990	62889991	rs6062679	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	20q13.33	PCMTD2	rs6062679-T	0.534615	5E-22		0.02278	[0.018-0.027] unit decrease	Affymetrix [19400838] (imputed)	N
1064	chr20	62890931	62890932	rs1808056	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	20q13.33	PCMTD2	rs1808056-A	0.4618	5E-9		0.0096	[0.0065-0.0127] unit increase	Affymetrix [~ 7740000] (imputed)	N
1064	chr20	62890931	62890932	rs1808056	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	20q13.33	PCMTD2	rs1808056-A	0.4616	2E-8		0.0093	[0.0062-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
1064	chr20	62891819	62891820	rs6062682	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	20q13.33	PCMTD2	rs6062682-T	0.4641	2E-11		0.01	[0.0071-0.0129] unit increase	Affymetrix [~ 7740000] (imputed)	N
1064	chr20	62905850	62905851	rs41279358	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	20q13.33	NR	rs41279358-C	0.844772	3E-6		1.1337868	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1064	chr20	62909519	62909520	rs6090101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	20q13.33		rs6090101-A	NR	1E-9		0.0182	[0.012-0.024] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1064	chr20	62909519	62909520	rs6090101	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	20q13.33	PCMTD2	rs6090101-G	0.80184	3E-11		0.0175965	[0.012-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1064	chr20	62909519	62909520	rs6090101	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	20q13.33	PCMTD2	rs6090101-G	0.80185	7E-13		0.0189877	[0.014-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1064	chr20	62909542	62909543	rs6090103	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	20q13.33	NR	rs6090103-C	0.812642	2E-8		0.015086	[0.0098-0.0204] unit increase	NR [NR]	N
1064	chr20	62911018	62911019	rs1570521	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	20q13.33	PCMTD2	rs1570521-T	0.4144	3E-10		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1065	chr20	62958305	62958306	rs146252638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	20q13.33		rs146252638-T	NR	4E-9		0.0183	[0.012-0.024] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1065	chr20	62962868	62962869	rs140775622	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	20q13.33	PCMTD2	rs140775622-C	0.830545	2E-12		0.02262	[0.016-0.029] unit decrease	Affymetrix [19400838] (imputed)	N
668	chr21	10971950	10971951	rs10439884	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	21p11.2	BAGE2, TPTE, BAGE	rs10439884-A		2E-6				Illumina [944512] (imputed)	N
668	chr21	11002010	11002011	rs240444	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	21p11.2	NR	rs240444-?	NR	2E-6		1.3094	[NR]	Affymetrix [722112]	N
695	chr21	14430494	14430495	rs145337706	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q11.2	NR	rs145337706-?	NR	1E-19		9.062	NR z score decrease	Illumina [at least 830937] (imputed)	N
695	chr21	14532100	14532101	rs147964822	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q11.2	NR	rs147964822-?	NR	2E-21		0.43	[0.33-0.53] unit increase	Illumina [at least 830937] (imputed)	N
696	chr21	14669930	14669931	rs1148737	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	21q11.2	Intergenic	rs1148737-?	NR	2E-6		1.369	[NR]	Affymetrix [492217] (imputed)	N
696	chr21	14670123	14670124	rs2801270	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	21q11.2	intergenic	rs2801270-G	0.084	3E-17		0.35	[0.27-0.44] unit decrease	Affymetrix [339439]	N
697	chr21	14750022	14750023	rs145672791	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	21q11.2	MIR3156-3	rs145672791-G	NR	9E-8		4.56621	[NR]	Illumina [5595657] (imputed)	N
697	chr21	14786145	14786146	rs3119481	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	21q11.2	NR	rs3119481-A	0.0965416	2E-6		1.134	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
697	chr21	14798236	14798237	rs466850	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	21q11.2	intergenic	rs466850-C	0.29	3E-6		4.72	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
698	chr21	14818409	14818410	rs2821870	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	21q11.2	MIR3156-3	rs2821870-T	0.89	6E-6		1.4285715	[1.27-1.59]	Affymetrix, Illumina [~ 8500000] (imputed)	N
698	chr21	14928354	14928355	rs9975691	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	21q11.2	intergenic	rs9975691-G	0.6255	6E-6	(Ordinal I)	0.2307	[0.13-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
701	chr21	15219846	15219847	rs28707003	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	21q11.2	intergenic	rs28707003-T	0.958	1E-9	(YKL-40)	28.903	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
701	chr21	15247523	15247524	rs56075329	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q11.2	NR	rs56075329-?	NR	1E-11		6.773	NR z score decrease	Illumina [at least 830937] (imputed)	N
701	chr21	15273229	15273230	rs72490194	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	21q11.2	NR	rs72490194-C		7E-6		0.1193	[0.067-0.171] SD units decrease	NR [10700000] (imputed)	N
701	chr21	15273743	15273744	rs56254584	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	21q11.2	NR	rs56254584-G		5E-6		0.1303	[0.074-0.186] SD units decrease	NR [10700000] (imputed)	N
702	chr21	15375506	15375507	rs7278536	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	21q11.2	NR	rs7278536-G	0.392	4E-6		0.1421	[0.083-0.201] unit increase	Illumina [10677593] (imputed)	N
702	chr21	15408033	15408034	rs2822388	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	21q11.2	LIP1, ABCC13	rs2822388-A	0.98	5E-7		0.86	[0.53-1.19] unit decrease	Affymetrix, Illumina [up to 2600000] (imputed)	N
702	chr21	15408033	15408034	rs2822388	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	21q11.2	C21orf81	rs2822388-G	0.02	5E-7	(cohort study)	2.3809524	[1.69-3.33]	Affymetrix, Illumina [up to 2600000] (imputed)	N
703	chr21	15491335	15491336	rs57346421	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs57346421-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
703	chr21	15492357	15492358	rs55798126	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs55798126-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
703	chr21	15497256	15497257	rs56337324	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs56337324-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
703	chr21	15498591	15498592	rs78528733	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs78528733-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
703	chr21	15503534	15503535	rs73894141	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs73894141-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
703	chr21	15504014	15504015	rs73894142	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q11.2	NR	rs73894142-?	NR	9E-6		11.877	NR unit increase	Affymetrix [at least 600000] (imputed)	N
704	chr21	15681993	15681994	rs2192161	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Non-word repetition	6,649 European ancestry children and adolescents	NA	21q11.2	ABCC13	rs2192161-A	0.06	7E-8		0.198	[0.13-0.27] unit increase	Illumina [~ 2400000] (imputed)	N
705	chr21	15742123	15742124	rs28699022	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	1,068 Japanese ancestry individuals	NA	21q11.2	intergenic	rs28699022-T	0.09	6E-6		0.0841	[0.048-0.12] unit increase	Illumina [6380737] (imputed)	N
705	chr21	15845051	15845052	rs1006899	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (spine)	6,865 European ancestry individuals	8,510 European ancestry individuals	21q11.2	NR	rs1006899-A	0.84	6E-6		0.09	[0.05-0.13] s.d. decrease	Illumina [305051]	N
705	chr21	15853434	15853435	rs2822687	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	21q11.2	SAMSN1	rs2822687-T	NR	7E-7		4.964	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
705	chr21	15856973	15856974	rs2822693	28355232	Ward-Caviness CK	2017-03-29	PLoS One	A genome-wide trans-ethnic interaction study links the PIGR-FCAMR locus to coronary atherosclerosis via interactions between genetic variants and residential exposure to traffic.	Coronary atherosclerosis (increased number of diseased vessels) (traffic exposure interaction)	1,562 European ancestry individuals, 538 African American individuals	NA	21q11.2	SAMSN1	rs2822693-A	NR	2E-6	(EA)	2.2222223	[1.32-2.04]	Illumina [at least 756588]	N
707	chr21	16005791	16005792	rs185455052	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	21q11.2	AF165138.7	rs185455052-A	0.0018	7E-6		0.541	[0.31-0.78] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
707	chr21	16046886	16046887	rs78742798	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	21q11.2		rs78742798-T	NR	7E-6		0.8765	unit increase	Illumina [8524982] (imputed)	N
707	chr21	16053024	16053025	rs2125755	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	21q11.2	NR	rs2125755-?		7E-6	(CA9)			Illumina [NR]	N
707	chr21	16079071	16079072	rs17004073	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	21q11.2	LOC388813	rs17004073-A	0.1189	5E-6	(African)			Illumina [4404269] (imputed)	N
707	chr21	16079071	16079072	rs17004073	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	21q11.2	LOC388813	rs17004073-A	0.07036	5E-7				Illumina [4404269] (imputed)	N
707	chr21	16116035	16116036	rs9636593	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	21q11.2	LOC388813	rs9636593-G	0.3268	3E-6	(EA)			Illumina [4404269] (imputed)	N
708	chr21	16123194	16123195	rs1459718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q11.2	NR	rs1459718-T	0.02787	9E-9	(ACTN4)	0.224	NR unit increase	Illumina [1671387] (imputed)	N
708	chr21	16171019	16171020	rs9982123	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q11.2	NR	rs9982123-?		8E-8				Illumina [4322238] (imputed)	N
708	chr21	16213168	16213169	rs2150367	30713548	Schurz H	2019-01-18	Front Genet	A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array.	Tuberculosis	242 South African admixed female cases, 168 South African admixed male cases, 223 South African admixed female controls, 182 South African admixed male controls	NA	21q11.2	LINC02246	rs2150367-?	NR	2E-6	(Female)	1.992032		Illumina [848325]	N
708	chr21	16227625	16227626	rs7278690	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q11.2	NR	rs7278690-G	0.926	6E-6	(EA)	0.0583	[0.033-0.084] unit decrease	Illumina [~ 11800000] (imputed)	N
708	chr21	16241734	16241734	rs11439302	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	21q11.2		rs11439302-G	NR	8E-7	(GLM)	1.6969	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
708	chr21	16241734	16241734	rs11439302	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	21q11.2		rs11439302-G	NR	5E-6	(GLM)	4.8086	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
709	chr21	16264793	16264794	rs76088896	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	21q11.2	NRIP1	rs76088896-T	0.8925	9E-6	(EA)			Illumina [NR] (imputed)	N
709	chr21	16311194	16311195	rs2092000	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	21q11.2	AF127577.8	rs2092000-C	0.559302857	5E-6		0.126755	[0.072-0.181] unit increase	Illumina [6969139] (imputed)	N
709	chr21	16328955	16328956	rs1297211	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	21q11.2	NRIP1	rs1297211-C	NR	2E-8		1.0320014	[1.0207-1.0432]	Affymetrix, Illumina [up to 7600000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	21q11.2		rs2229742-C	NR	4E-9		0.0762	[0.051-0.101] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
709	chr21	16339171	16339172	rs2229742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	21q11.2		rs2229742-C	NR	1E-8		0.0567	[0.037-0.076] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
709	chr21	16339171	16339172	rs2229742	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	21q11.2		rs2229742-C	NR	5E-9		0.0215	[0.014-0.029] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
709	chr21	16339171	16339172	rs2229742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	21q11.2	NR	rs2229742-C	NR	3E-13		0.0294	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	21q11.2	NR	rs2229742-C	NR	1E-9		0.024	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q11.2	NRIP1	rs2229742-C	0.10324	4E-20		0.033354025	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q11.2	NRIP1	rs2229742-C	0.10319300000000001	8E-10		0.022987772	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q11.2	NRIP1	rs2229742-C	0.103242	6E-13		0.026194444	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q11.2	NRIP1	rs2229742-C	0.10325	7E-15		0.028296785	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	21q11.2	NR	rs2229742-G		4E-14		0.14	[0.1-0.18] unit increase	NR [NR]	N
709	chr21	16339171	16339172	rs2229742	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q11.2	intergenicIP1	rs2229742-C		1E-11		0.024	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	21q11.2		rs2229742-?	NR	5E-14		0.0249837	[0.018-0.031] unit decrease	NR [6912294] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	21q11.2		rs2229742-G	0.896549	1E-14		0.025	[0.019-0.031] unit decrease	NR [7250403] (imputed)	N
709	chr21	16339171	16339172	rs2229742	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	21q11.2	NR	rs2229742-C	0.103928	7E-16		0.025738	[0.019-0.032] unit decrease	Affymetrix [16668957] (imputed)	N
709	chr21	16339171	16339172	rs2229742	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	21q11.2	NR	rs2229742-C	0.13	7E-9		0.032112274	[0.021-0.043] unit decrease	NR [1977400] (imputed)	N
709	chr21	16339171	16339172	rs2229742	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	21q11.2	NRIP1	rs2229742-G	0.88135	7E-11		0.027215	[0.019-0.035] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
709	chr21	16339171	16339172	rs2229742	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	21q11.2	NRIP1	rs2229742-C	0.10298	4E-9		0.07623563	[0.051-0.102] unit increase	Affymetrix [7288503] (imputed)	N
709	chr21	16339171	16339172	rs2229742	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	21q11.2	NRIP1	rs2229742-C	0.103481	1E-8		0.056737185	[0.037-0.076] unit increase	Affymetrix [7288503] (imputed)	N
709	chr21	16339171	16339172	rs2229742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q11.2		rs2229742-?	NR	1E-13				NR [~ 8900000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q11.2		rs2229742-?	NR	5E-21				NR [~ 8900000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	21q11.2	NRIP1	rs2229742-C	0.1047	9E-10		6.121	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
709	chr21	16339171	16339172	rs2229742	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	21q11.2	NRIP1	rs2229742-G	0.87	2E-8		0.0337	[0.022-0.045] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
709	chr21	16340288	16340289	rs2229741	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q11.2	NRIP1	rs2229741-?		1E-29				Affymetrix, Illumina [NR] (imputed)	N
709	chr21	16340288	16340289	rs2229741	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	21q11.2	NRIP1	rs2229741-?	0.4726	6E-7	(SRM)			Illumina [475971]	N
709	chr21	16343811	16343812	rs13050325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q11.2	NRIP1	rs13050325-A		6E-9		0.258	unit decrease	Affymetrix [at least 2696785] (imputed)	N
709	chr21	16343811	16343812	rs13050325	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q11.2	NRIP1	rs13050325-A		7E-7		0.146	unit decrease	Affymetrix [at least 2696785] (imputed)	N
709	chr21	16353808	16353809	rs17274750	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	21q11.2	NR	rs17274750-A	0.9063	5E-9		0.07	[0.047-0.093] unit increase	Illumina [~ 10600000] (imputed)	N
709	chr21	16360843	16360844	rs559044903	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	21q11.2		rs559044903-G	NR	6E-7		1.1201972	NR	Affymetrix [7846216] (imputed)	N
709	chr21	16364755	16364756	rs2822999	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q11.2	NR	rs2822999-G	0.173	2E-11	(EA)	0.0589	[0.042-0.076] unit increase	Illumina [~ 11800000] (imputed)	N
709	chr21	16371101	16371102	rs1997577	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	21q11.2		rs1997577-T	NR	3E-11		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q11.2	NRIP1	rs1997577-T	0.154559	3E-11		0.020476542	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q11.2	NRIP1	rs1997577-T	0.154565	1E-9		0.01872164	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	21q11.2	NR	rs1997577-A	0.845079	4E-11		0.0173	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q11.2	NR	rs1997577-T	0.155037	3E-13		0.018537	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	21q11.2	NR	rs1997577-T	0.154954	6E-30		0.029591	[0.024-0.035] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
709	chr21	16371101	16371102	rs1997577	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	21q11.2		rs1997577-T	0.373389614	2E-9		0.87838453	[0.842029107-0.916309679]	Illumina [8919992] (imputed)	N
709	chr21	16371101	16371102	rs1997577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q11.2		rs1997577-?	NR	2E-10				NR [~ 8900000] (imputed)	N
709	chr21	16371875	16371875	rs397712573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	21q11.2	NRIP1	rs397712573-TA	0.359127	3E-33		0.028647993	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
709	chr21	16371875	16371875	rs397712573	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	21q11.2	NRIP1	rs397712573-TA	0.3589	8E-12		0.02593972	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
709	chr21	16373835	16373836	rs2823002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q21.1	NRIP1	rs2823002-T	0.157672	2E-12		0.02164241	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16373835	16373836	rs2823002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q21.1	NRIP1	rs2823002-T	0.157657	8E-27		0.03282768	[0.027-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16373835	16373836	rs2823002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q21.1		rs2823002-?	NR	6E-12				NR [~ 8900000] (imputed)	N
709	chr21	16377649	16377650	rs7280064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs7280064-T	0.211243	2E-13				Affymetrix, Illumina [24649327] (imputed)	N
709	chr21	16377649	16377650	rs7280064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs7280064-T	0.211281	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
709	chr21	16377649	16377650	rs7280064	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs7280064-T	0.196907	2E-32				Affymetrix, Illumina [23467995] (imputed)	N
709	chr21	16377682	16377682	rs139790892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	21q21.1		rs139790892-GCCCCCC	NR	9E-11		0.0209	[0.015-0.027] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
709	chr21	16377682	16377682	rs139790892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	21q21.1		rs139790892-GCCCCCC	NR	2E-23		0.0323	[0.026-0.039] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
709	chr21	16377682	16377682	rs139790892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	21q21.1		rs139790892-GCCCCCC	NR	3E-9		0.0196	[0.013-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
709	chr21	16377682	16377682	rs139790892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q21.1	NRIP1	rs139790892-GCCCCCC	0.153912	5E-11		0.020857092	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16377682	16377682	rs139790892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q21.1	NRIP1	rs139790892-GCCCCCC	0.153913	5E-10		0.01958767	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
709	chr21	16380428	16380429	rs2823005	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	21q21.1	NR	rs2823005-A	0.89	8E-6	(AA)	5.23	[3.02-7.44] bpm decrease	Illumina [at least 1100000] (imputed)	N
710	chr21	16384939	16384940	rs28574812	34582791	Mikhaylova AV	2021-09-27	Am J Hum Genet	Whole-genome sequencing in diverse subjects identifies genetic correlates of leukocyte traits: The NHLBI TOPMed program.	Monocyte count	14,246 African American individuals, 686 East Asian ancestry individuals, 33,285 European American ancestry individuals, 13,585 Hispanic/Latin American individuals	199,126 African ancestry, European ancestry, Hispanic or Latin American individuals	21q21.1		rs28574812-G	NR	2E-7		0.0231	[0.014-0.032] cell/L decrease	NR [93891280]	N
710	chr21	16384939	16384940	rs28574812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	21q21.1	NR	rs28574812-G	0.15791	3E-10		0.016041	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
710	chr21	16387902	16387903	rs2823008	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	21q21.1	NR	rs2823008-T	0.89	8E-6	(AA)	5.24	[3.03-7.45] bpm decrease	Illumina [at least 1100000] (imputed)	N
710	chr21	16403393	16403394	rs8127283	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	21q21.1	NRIP1	rs8127283-G	0.511405	5E-9		0.0123137	[0.0082-0.0164] unit increase	Affymetrix [NR] (imputed)	N
710	chr21	16416810	16416811	rs2823021	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	21q21.1	NR	rs2823021-?	NR	3E-6		0.119124	[0.069-0.169] unit increase	NR [13958389] (imputed)	N
710	chr21	16438792	16438793	rs2223043	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q21.1		rs2223043-G	NR	6E-16		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
710	chr21	16438792	16438793	rs2223043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q21.1	AF127577.12, NRIP1	rs2223043-G	0.305386	4E-17		0.02147583	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
710	chr21	16438792	16438793	rs2223043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q21.1	AF127577.12, NRIP1	rs2223043-G	0.305367	1E-15		0.020443715	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
710	chr21	16438792	16438793	rs2223043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs2223043-G	0.369632	4E-17				Affymetrix, Illumina [19872809] (imputed)	N
710	chr21	16438792	16438793	rs2223043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q21.1	NR	rs2223043-G	0.306981	3E-17		0.019382	[0.015-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
710	chr21	16438792	16438793	rs2223043	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q21.1		rs2223043-?	NR	2E-14				NR [~ 8900000] (imputed)	N
710	chr21	16439882	16439883	rs9975024	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	21q21.1	NR	rs9975024-?	NR	4E-8		1.0520115	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
710	chr21	16442303	16442304	rs2823035	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	21q21.1	NR	rs2823035-A	0.1124	1E-6		0.0186	[0.011-0.026] unit increase	Affymetrix, Illumina [at least 283291] (imputed)	N
710	chr21	16462267	16462268	rs2823048	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	21q21.1	NR	rs2823048-?	0.19	8E-7	(EA)	1.92	[1.28-3.85]	Affymetrix, Illumina [NR] (imputed)	N
710	chr21	16465148	16465149	rs2823053	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	21q21.1	NR	rs2823053-?	0.18	8E-7	(EA)	1.96	[1.28-4.35]	Affymetrix, Illumina [NR] (imputed)	N
711	chr21	16520831	16520832	rs2823093	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	21q21.1		rs2823093-A	NR	2E-21		0.94	[0.92-0.95]	Affymetrix, Illumina [NR] (imputed)	N
711	chr21	16520831	16520832	rs2823093	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q21.1	NRIP1	rs2823093-G	0.73	2E-20	(EA)	1.0638298	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
711	chr21	16520831	16520832	rs2823093	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	21q21.1	NR	rs2823093-G	0.73	2E-12		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 14000000] (imputed)	N
711	chr21	16520831	16520832	rs2823093	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	21q21.1	NR	rs2823093-G	0.73	3E-13		1.0752687	[1.05-1.1]	Affymetrix, Illumina [~ 11600000] (imputed)	N
711	chr21	16520831	16520832	rs2823093	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	21q21.1	NRIP1	rs2823093-G	0.73	7E-16		1.09	[1.06-1.11]	Affymetrix, Illumina [~ 2600000] (imputed)	N
711	chr21	16522081	16522082	rs2823096	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q21.1	NR	rs2823096-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
711	chr21	16522081	16522082	rs2823096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q21.1		rs2823096-?	NR	4E-10				NR [~ 8900000] (imputed)	N
711	chr21	16522081	16522082	rs2823096	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	21q21.1	NR	rs2823096-A	0.81	5E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix [2446094] (imputed)	N
711	chr21	16522081	16522082	rs2823096	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	21q21.1	NR	rs2823096-A	0.81	5E-8				Affymetrix [2446094] (imputed)	N
711	chr21	16545905	16545906	rs2823118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q21.1		rs2823118-?	NR	6E-8				NR [~ 8900000] (imputed)	N
711	chr21	16549469	16549469	rs35631698	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q21.1	intergenic	rs35631698-G	0.6254	3E-13		0.0145	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
711	chr21	16556366	16556367	rs1882961	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q21.1		rs1882961-?	NR	3E-13				NR [~ 8900000] (imputed)	N
711	chr21	16561703	16561704	rs2823126	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	35,035 East Asian ancestry cases, 35,771 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	NA	21q21.1		rs2823126-A	0.28	1E-10	(conditional)	0.9	[0.88-0.93]	Affymetrix, Illumina [NR] (imputed)	N
711	chr21	16564560	16564561	rs7282349	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	21q21.1		rs7282349-C	NR	1E-10		1.0809	NR	Affymetrix [7846216] (imputed)	N
711	chr21	16568523	16568524	rs7275695	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	21q21.1		rs7275695-?	NR	4E-6		0.93113	[0.9-0.96]	NR [682398]	N
711	chr21	16568523	16568524	rs7275695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	21q21.1	NR	rs7275695-T	NR	4E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
711	chr21	16568523	16568524	rs7275695	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	21q21.1	NR	rs7275695-T	NR	1E-10		0.0164	[0.012-0.021] unit increase	Affymetrix [9000000] (imputed)	N
711	chr21	16572275	16572276	rs7276622	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	21q21.1		rs7276622-G	NR	7E-7		1.076	[1.045-1.107]	Affymetrix [7846216] (imputed)	N
711	chr21	16572587	16572604	rs145928162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	21q21.1		rs145928162-T	NR	3E-11		0.0746	[0.053-0.097] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
711	chr21	16574121	16574122	rs11088317	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	21q21.1	NRIP1, USP25	rs11088317-T	0.2871	5E-12		6.895	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
711	chr21	16574454	16574455	rs2403907	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q21.1	NR	rs2403907-A	0.3159	2E-32	(EA)	0.0796	[0.066-0.093] unit decrease	Illumina [~ 11800000] (imputed)	N
711	chr21	16576782	16576783	rs2823139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	21q21.1		rs2823139-A	NR	2E-15		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
711	chr21	16576782	16576783	rs2823139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	21q21.1		rs2823139-A	NR	2E-30		0.0202	[0.017-0.024] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
711	chr21	16576782	16576783	rs2823139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	21q21.1		rs2823139-A	NR	2E-16		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
711	chr21	16576782	16576783	rs2823139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q21.1	NR	rs2823139-A	NR	2E-14		0.0192	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
711	chr21	16576782	16576783	rs2823139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	21q21.1	NR	rs2823139-A	NR	5E-13		0.0184	[0.014-0.023] unit increase	Affymetrix [9000000] (imputed)	N
711	chr21	16576782	16576783	rs2823139	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	21q21.1	NR	rs2823139-A	0.34	7E-13		0.0138	[0.01-0.0176] unit increase	NR [NR]	N
711	chr21	16576782	16576783	rs2823139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q21.1		rs2823139-A	0.338054	2E-22		0.02284849	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q21.1		rs2823139-A	0.338022	1E-37		0.030178238	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q21.1		rs2823139-A	0.338043	4E-37		0.029914021	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q21.1	NR	rs2823139-A	0.337033	2E-34		0.024153	[0.02-0.028] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs2823139-A	0.320315	1E-52				Affymetrix, Illumina [24653286] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs2823139-A	0.320164	2E-51				Affymetrix, Illumina [24558453] (imputed)	N
711	chr21	16576782	16576783	rs2823139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q21.1	NR	rs2823139-A	0.337128	2E-53		0.031704	[0.028-0.036] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	21q21.1	NRIP1	rs2823139-A	0.339	3E-11		0.394	[0.28-0.51] unit decrease	Affymetrix [NR] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	21q21.1	NRIP1	rs2823139-A	0.3439	1E-13	(EA)	0.0027	[0.0019-0.0035] unit decrease	Affymetrix [NR] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	21q21.1	NRIP1	rs2823139-A	0.327	7E-17		0.0026	[0.002-0.0032] unit decrease	Affymetrix [NR] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	21q21.1	NRIP1	rs2823139-A	0.3274	1E-29		0.0026	[0.002-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	21q21.1	NRIP1	rs2823139-A	0.3439	2E-27		0.0027	[0.0019-0.0035] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Chronic kidney disease	64,164 European and unknown ancestry cases, 561,055 European and unknown ancestry controls	NA	21q21.1	NRIP1	rs2823139-A	0.33	1E-8		1.0485	[1.0316-1.0657]	Affymetrix, Illumina [9585923] (imputed)	N
711	chr21	16576782	16576783	rs2823139	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	21q21.1	NRIP1	rs2823139-A	0.3165	8E-12		0.005	[0.0036-0.0064] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
711	chr21	16576782	16576783	rs2823139	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	21q21.1	NRIP1	rs2823139-A	0.293	4E-9		0.197	[0.015-0.379] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
711	chr21	16576782	16576783	rs2823139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	21q21.1		rs2823139-?	NR	8E-9				NR [~ 8900000] (imputed)	N
711	chr21	16576782	16576783	rs2823139	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q21.1	intergenic	rs2823139-A	0.3392	9E-12		0.25	[0.18-0.32] mmHg increase	Affymetrix [NR] (imputed)	N
711	chr21	16578158	16578159	rs1997595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q21.1	NR	rs1997595-C	0.34112	3E-55		0.030639	[0.027-0.034] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
711	chr21	16578158	16578159	rs1997595	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q21.1	intergenic	rs1997595-C		3E-31		0.027	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
711	chr21	16578158	16578159	rs1997595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	21q21.1	intergenic	rs1997595-C	0.3405	7E-15		0.02966655	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
711	chr21	16578158	16578159	rs1997595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q21.1	intergenic	rs1997595-C	0.3405	1E-16		0.03144958	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
711	chr21	16578158	16578159	rs1997595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	21q21.1	intergenic	rs1997595-C	0.3405	5E-19		0.0337084	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
711	chr21	16578799	16578800	rs2823140	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q21.1		rs2823140-?	NR	2E-24				NR [~ 8900000] (imputed)	N
711	chr21	16579804	16579805	rs2823141	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	21q21.1	NR	rs2823141-A	0.4078	9E-11		0.046	[0.032-0.06] unit decrease	Illumina [~ 10600000] (imputed)	N
711	chr21	16582709	16582710	rs56038390	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	21q21.1	NRIP1	rs56038390-G	0.3014	1E-9		6.07	NR z score decrease	Illumina [26237160] (imputed)	N
711	chr21	16582879	16582880	rs62219001	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	21q21.1	NR	rs62219001-G	0.982845	1E-12		0.0530653	[0.038-0.068] unit increase	Affymetrix [15000001]	N
711	chr21	16584340	16584341	rs2064040	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Motor composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	21q21.1	NR	rs2064040-?	NR	2E-7		1.09	[0.68-1.5] unit increase	Illumina [552487]	N
711	chr21	16586681	16586682	rs12106385	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	21q21.1	RPS26P5	rs12106385-?	NR	5E-8		0.0521	[0.035-0.069] unit decrease	Affymetrix [5701386] (imputed)	N
711	chr21	16590031	16590032	rs57126985	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	21q21.1	NRIP1	rs57126985-C	0.03	6E-6		1.754386	[1.52-1.99]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
711	chr21	16631170	16631171	rs117587217	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	21q21.1	NRIP1, USP25	rs117587217-C	0.016	1E-8		0.1	NR unit decrease	Illumina [9591901] (imputed)	N
712	chr21	16687416	16687417	rs117512673	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q21.1	NR	rs117512673-G	0.0112	6E-6	(EA)	0.1749	[0.099-0.25] unit decrease	Illumina [~ 11800000] (imputed)	N
713	chr21	16781135	16781136	rs2823253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	21q21.1	NR	rs2823253-C	0.692157	9E-11		0.028213	[0.02-0.037] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
713	chr21	16785681	16785682	rs2037977	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q21.1		rs2037977-A	0.283474	3E-21		0.02372548	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr21	16785687	16785688	rs2037978	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q21.1	intergenic	rs2037978-C		7E-26		0.026	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
713	chr21	16785687	16785688	rs2037978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q21.1	intergenic	rs2037978-C	0.2814	1E-12		0.02862428	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr21	16785687	16785688	rs2037978	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	21q21.1	intergenic	rs2037978-C	0.2814	5E-15		0.03149816	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr21	16785693	16785694	rs2037979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	21q21.1		rs2037979-A	0.284592	3E-8		0.0192842	[0.012-0.026] unit decrease	Illumina [13479135] (imputed)	N
713	chr21	16785693	16785694	rs2037979	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	21q21.1	intergenic	rs2037979-A	0.2835	1E-10		0.0259616	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
713	chr21	16786795	16786796	rs2823257	25489960	Yang SK	2015-01-01	Inflamm Bowel Dis	Immunochip analysis identification of 6 additional susceptibility loci for Crohn's disease in Koreans.	Crohn's disease	722 Korean ancestry cases, 461 Korean ancestry controls	948 Korean ancestry cases, 977 Korean ancestry controls	21q21.1	NRIP1, USP25	rs2823256-G	0.7	2E-7		1.35	[1.20-1.51]	Illumina [549616] (imputed)	N
713	chr21	16789348	16789349	rs3765209	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	21q21.1	NR	rs3765209-T	0.322	6E-9		0.55	[0.36-0.74] unit decrease	Affymetrix [NR] (imputed)	N
713	chr21	16789348	16789349	rs3765209	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	21q21.1		rs3765209-?	NR	4E-10				NR [~ 8900000] (imputed)	N
713	chr21	16790446	16790447	rs2823265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs2823265-G	0.296896	1E-37				Affymetrix, Illumina [24332387] (imputed)	N
713	chr21	16790762	16790763	rs2242824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	21q21.1		rs2242824-C	NR	2E-27		0.0203	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
713	chr21	16794754	16794755	rs2823270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q21.1		rs2823270-G	NR	3E-31		0.0206	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
713	chr21	16794754	16794755	rs2823270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q21.1		rs2823270-G	NR	1E-36		0.023	[0.019-0.027] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
713	chr21	16794754	16794755	rs2823270	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q21.1		rs2823270-G	0.299407	2E-31		0.028206058	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr21	16794754	16794755	rs2823270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q21.1		rs2823270-?	NR	7E-25				NR [~ 8900000] (imputed)	N
713	chr21	16797067	16797068	rs7279911	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q21.1		rs7279911-A	0.301312	3E-37		0.030716058	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr21	16798585	16798586	rs2823272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	21q21.1		rs2823272-A	NR	8E-10		0.0572	[0.039-0.075] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
713	chr21	16798585	16798586	rs2823272	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	21q21.1	NR	rs2823272-T	0.682	6E-11		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
713	chr21	16798585	16798586	rs2823272	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	21q21.1	AJ006998.2	rs2823272-A	0.314683	9E-11		0.06377994	[0.044-0.083] unit decrease	Affymetrix [7288503] (imputed)	N
713	chr21	16798585	16798586	rs2823272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	21q21.1		rs2823272-?	NR	1E-12				NR [~ 8900000] (imputed)	N
713	chr21	16804329	16804330	rs1736013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	21q21.1		rs1736013-C	0.432197	2E-15		0.01817459	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr21	16804366	16804367	rs1297255	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	21q21.1	intergenic	rs1297255-T	0.432	2E-10		0.02329393	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
713	chr21	16805219	16805220	rs1736135	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	21q21.1	intergenic	rs1736135-T	NR	2E-7		1.06	[NR]	Illumina [266047]	N
713	chr21	16805219	16805220	rs1736135	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	21q21.1	intergenic	rs1736135-T	0.57	7E-9		1.18	[NR]	Affymetrix, Illumina [635547] (imputed)	N
713	chr21	16806708	16806709	rs1297258	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q21.1	NR	rs1297258-?	NR	5E-30	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
713	chr21	16811537	16811549	rs377648080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q21.1		rs377648080-A	0.429926	2E-26		0.024468113	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr21	16812551	16812552	rs1736020	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	21q21.1	intergenic	rs1736020-C	0.579	9E-12		1.16	[1.11-1.21]	Affymetrix, Illumina [953241] (imputed)	N
713	chr21	16812622	16812623	rs1297261	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	21q21.1	NR	rs1297261-T	0.57	2E-12		1.13	[NR]	NR [8546065] (imputed)	N
713	chr21	16813052	16813053	rs1736147	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	21q21.1	LOC101927745	rs1736147-G	0.57	3E-9				NR [> 9500000] (imputed)	N
713	chr21	16813211	16813212	rs1736148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	21q21.1		rs1736148-C	0.429738	9E-10		0.013696992	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
713	chr21	16814876	16814877	rs1736150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs1736150-G	0.568826	1E-23				Affymetrix, Illumina [17210439] (imputed)	N
713	chr21	16814876	16814877	rs1736150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	21q21.1	NR	rs1736150-G	0.570202	6E-23		0.019292	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
713	chr21	16817050	16817051	rs1297265	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q21.1	intergenic	rs1297265-A	0.56	7E-13		1.11	[1.06-1.15]	Affymetrix, Illumina [~ 1100000] (imputed)	N
713	chr21	16817937	16817938	rs2823286	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	21q21.1	Intergenic	rs2823286-?		2E-13				Illumina [9578670] (imputed)	N
713	chr21	16817937	16817938	rs2823286	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	21q21.1	Intergenic	rs2823286-?		4E-29				Illumina [9725440] (imputed)	N
713	chr21	16817937	16817938	rs2823286	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	21q21.1	Intergenic	rs2823286-?		6E-26				Illumina [9560910] (imputed)	N
713	chr21	16817937	16817938	rs2823286	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q21.1	NR	rs2823286-G	0.71	2E-12	(EA)	1.1033705		Affymetrix, Illumina [~ 9000000] (imputed)	N
713	chr21	16817937	16817938	rs2823286	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q21.1	NR	rs2823286-G	0.71	1E-24	(EA)	1.1480856	[1.12-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
713	chr21	16817937	16817938	rs2823286	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q21.1	intergenic	rs2823286-G	0.708	9E-30		1.157	[1.121-1.194]	Affymetrix, Illumina [1230000] (imputed)	N
713	chr21	16820887	16820888	rs2823288	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	21q21.1	intergenic	rs2823288-?	NR	4E-28	(subset analysis)			Illumina [130052]	N
713	chr21	16828234	16828235	rs1736157	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs1736157-C	0.414643	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
713	chr21	16841194	16841195	rs2823289	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Cyclothymic temperament	775 European ancestry individuals	NA	21q21.1		rs2823289-G	NR	6E-6		0.03159	unit increase	Illumina [2550710] (imputed)	N
713	chr21	16843158	16843159	rs12627420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	21q21.1		rs12627420-G	NR	2E-10		0.0184	[0.013-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
713	chr21	16853866	16853867	rs9978541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	21q21.1		rs9978541-G	NR	4E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
713	chr21	16869847	16869848	rs2823310	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		21q21.1	intergenic	rs2823310-?	NR	7E-8	(AA)	0.109	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
713	chr21	16869847	16869848	rs2823310	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		21q21.1	intergenic	rs2823310-?	NR	3E-7	(AA)	0.043	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
713	chr21	16870926	16870927	rs9984933	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	21q21.1	NR	rs9984933-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
713	chr21	16899810	16899811	rs35889520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q21.1		rs35889520-C	0.185558	2E-10		0.018428827	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
713	chr21	16907034	16907034	rs35040684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q21.1		rs35040684-TG	0.183493	5E-11		0.019085607	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
714	chr21	16914904	16914905	rs2823357	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	21q21.1	USP25	rs2823357-A	0.38	6E-7		1.15	[1.09-1.21]	Illumina [522782]	N
714	chr21	16933995	16933996	rs2823376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q21.1		rs2823376-?	NR	1E-9				NR [~ 8900000] (imputed)	N
714	chr21	16960262	16960263	rs2403976	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	21q21.1	NR	rs2403976-?	NR	6E-6		0.10133261	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
714	chr21	16990493	16990494	rs2823385	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	21q21.1		rs2823385-G	0.21	2E-8		5.59	z score increase	Affymetrix [9061022] (imputed)	N
714	chr21	16990672	16990673	rs2205581	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	21q21.1	NR	rs2205581-C	0.2634	1E-8				NR [9056863] (imputed)	N
714	chr21	17025153	17025154	rs192418381	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	21q21.1	NR	rs192418381-C	0.0124	3E-6		1.96	[1.54-2.44]	Illumina [64973696] (imputed)	N
715	chr21	17069165	17069166	rs2823455	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	21q21.1	USP25	rs2823455-?	0.03	9E-6				Affymetrix [253903]	N
715	chr21	17126993	17126994	rs7283707	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	21q21.1	USP25	rs7283707-?	NR	4E-9	(EA)	175.56	[117.17-233.95] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
717	chr21	17323495	17323496	rs143286093	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.1	NR	rs143286093-A	NR	1E-6	(female)	0.3129	[0.19-0.44] unit increase	Illumina [11133794] (imputed)	N
717	chr21	17355048	17355049	rs12483653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q21.1		rs12483653-T	NR	3E-14		0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
717	chr21	17377371	17377372	rs143876314	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	21q21.1	NR	rs143876314-?	NR	4E-6		0.0078478	[0.0045-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
717	chr21	17388730	17388731	rs12482831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q21.1		rs12482831-?	NR	2E-22				NR [~ 8900000] (imputed)	N
717	chr21	17400915	17400916	rs8132129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	21q21.1		rs8132129-T	NR	5E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
718	chr21	17483132	17483133	rs2823615	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	C21orf34	rs2823615-A	0.178	5E-8	(Sleep RQ)	0.04	[NR] unit increase	Illumina [899892]	N
718	chr21	17511776	17511777	rs76339001	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	21q21.1	NR	rs76339001-T		1E-6		0.4313	[0.26-0.6] SD units increase	NR [10700000] (imputed)	N
718	chr21	17562283	17562284	rs78211511	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	21q21.1	NR	rs78211511-?	NR	3E-7	(Native Hawaiian)	1.0443	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
719	chr21	17591447	17591448	rs2823661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	21q21.1		rs2823661-T	NR	2E-11		0.0153	[0.011-0.02] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
719	chr21	17591447	17591448	rs2823661	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	21q21.1	USP25, CXADR	rs2823661-T	0.43	5E-9		5.85	z-score increase	Affymetrix [4311822] (imputed)	N
719	chr21	17591912	17591913	rs1475883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	21q21.1	NR	rs1475883-G	0.5672	2E-8		0.00398051	[0.0023-0.0057] unit increase	Affymetrix [16582909] (imputed)	N
719	chr21	17591912	17591913	rs1475883	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	21q21.1	NR	rs1475883-G	0.5672	3E-7		0.00420234	[0.0023-0.0061] unit increase	Affymetrix [16582965] (imputed)	N
719	chr21	17593385	17593386	rs553005340	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		21q21.1	intergenic	rs553005340-G	0.025	3E-6		1.689	[0.99-2.39] unit increase	Illumina [640625] (imputed)	N
719	chr21	17610851	17610852	rs12482948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	21q21.1		rs12482948-T	NR	5E-9		0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
719	chr21	17611693	17611694	rs2823674	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	21q21.1	NR	rs2823674-T	0.433841	5E-8		0.0113257	[0.0073-0.0154] unit increase	NR [NR]	N
719	chr21	17661417	17661418	rs2823739	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	21q21.1		rs2823739-G	0.134426194	1E-8		0.17302689	[0.11-0.23] unit decrease	Illumina [13406905] (imputed)	N
719	chr21	17667719	17667720	rs2823743	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	21q21.1	C21orf34	rs2823743-C	0.14	1E-6	(IL6)			Illumina [588352]	N
720	chr21	17763196	17763197	rs8129609	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	21q21.1		rs8129609-T	0.812192	6E-6		0.015811	[0.0089-0.0227] unit decrease	Illumina [13900000] (imputed)	N
720	chr21	17768523	17768524	rs2823779	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	21q21.1	CNTNAP2	rs2823779-?	0.09	7E-6	(Prostate cancer, urine incontinence, univariable analysis)	0.1	[NR] unit increase	Illumina [2417493] (imputed)	N
720	chr21	17787513	17787514	rs56178309	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q21.1		rs56178309-?	NR	4E-8				NR [~ 8900000] (imputed)	N
720	chr21	17814980	17814981	rs8133984	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.1	USP25	rs8133984-?	NR	8E-6	(CE 20:3)	0.26571056	[0.15-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
721	chr21	17828290	17828291	rs2823819	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	21q21.1	C21orf34	rs2823819-C	0.18	7E-7		1.65	[NR]	Illumina [835136]	N
722	chr21	18043928	18043929	rs116861740	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	21q21.1	LINC00478, C21orf37	rs116861740-?		1E-6				Affymetrix [394222]	N
722	chr21	18046231	18046232	rs2823962	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls	21q21.1	NR	rs2823962-?	NR	9E-6	(survival)			Illumina [288357]	N
722	chr21	18047592	18047593	rs2211994	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	21q21.1	NR	rs2211994-C	NR	6E-7		0.0885	[0.054-0.123] SD units decrease	NR [10700000] (imputed)	N
723	chr21	18114471	18114472	rs4818280	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q21.1	intergenic	rs4818280-T	0.6269	3E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix [18391927] (imputed)	N
723	chr21	18121526	18121527	rs4818281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q21.1		rs4818281-?	NR	3E-8				NR [~ 8900000] (imputed)	N
723	chr21	18124768	18124769	rs11088590	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	21q21.1	NR	rs11088590-C	0.318923	1E-13		0.0543761	[0.04-0.069] unit increase	Affymetrix [17914406] (imputed)	N
723	chr21	18158185	18158186	rs34266312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q21.1	NR	rs34266312-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
723	chr21	18206629	18206630	rs2205299	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	21q21.1	NR	rs2205299-T	NR	6E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
724	chr21	18221924	18221925	rs979045	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	21q21.1	SNORD74B, USP25	rs979045-T	0.169956	1E-6		0.609	[0.498 - 0.744]	Illumina [5396854] (imputed)	N
724	chr21	18251207	18251208	rs143168415	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	21q21.1	NR	rs143168415-A	0.006651	5E-6		0.8276	[0.47-1.18] unit decrease	Illumina [10677593] (imputed)	N
724	chr21	18285473	18285474	rs2824122	30715261	Brouwer WP	2019-02-02	Clin Infect Dis	Genome Wide Association Study Identifies Genetic Variants Associated With Early And Sustained Response To (Peg)Interferon In Chronic Hepatitis B Patients: The GIANT-B Study.	Response to (pegylated) interferon in chronic hepatitis B	282 Asian, European, African and other ancestry cases, 641 Asian, European, African and other ancestry controls	NA	21q21.1	intergenic	rs2824122-A	0.3259	3E-6		0.5717	[0.33-0.81] unit decrease	Illumina [8102086] (imputed)	N
724	chr21	18294461	18294462	rs2824138	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	21q21.1	NR	rs2824138-C	0.182318	2E-13		0.0259618	[0.019-0.033] unit increase	Affymetrix [16580851] (imputed)	N
725	chr21	18372768	18372769	rs1740260	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.1	NR	rs1740260-?	NR	1E-8				Affymetrix [NR]	N
725	chr21	18436440	18436441	rs6517733	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	21q21.1	MIR99AHG, LINC01549	rs6517733-G	0.070655	4E-6		0.584886	[0.34-0.83] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
726	chr21	18585223	18585224	rs62239470	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	21q21.1	NR	rs62239470-T	0.8474	1E-7		0.8314	[0.53-1.14] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
727	chr21	18651188	18651189	rs551606218	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	21q21.1	NR	rs551606218-?	NR	7E-6		0.0075676	[0.0043-0.0109] unit decrease	Affymetrix [805426] (imputed)	N
727	chr21	18740798	18740799	rs11700530	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q21.1	NR	rs11700530-A	0.6155	4E-6	(EA)	0.0323	[0.019-0.046] unit increase	Illumina [~ 11800000] (imputed)	N
728	chr21	18803732	18803733	rs35739539	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	21q21.1	NR	rs35739539-T	NR	3E-6		0.145	[0.084-0.206] unit increase	Illumina [6319684] (imputed)	N
728	chr21	18813489	18813490	rs208892	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	21q21.1	C21orf37	rs208892-A	0.4	6E-7		1.9	[1.47-2.45]	Affymetrix [583535] (imputed)	N
729	chr21	18905397	18905398	rs2824337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	21q21.1		rs2824337-A	NR	7E-9		0.0146	[0.0097-0.0195] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
729	chr21	18911835	18911836	rs186722413	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	21q21.1		rs186722413-C	NR	5E-9		13.66	[9.09-18.23] unit decrease	Illumina [97506867]	N
729	chr21	18934512	18934516	rs71333557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q21.1	CXADR	rs71333557-C	0.200752	7E-11		0.018124321	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
729	chr21	18940922	18940923	rs428017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q21.1		rs428017-?	NR	8E-11				NR [~ 8900000] (imputed)	N
729	chr21	18944888	18944889	rs62239920	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q21.1	NR	rs62239920-A	0.202834	2E-10		0.016198	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
729	chr21	18947036	18947037	rs2824372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	21q21.1		rs2824372-C	NR	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
729	chr21	18950461	18950462	rs211959	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q21.1	NR	rs211959-G	0.727271	5E-10				Affymetrix, Illumina [23114412] (imputed)	N
729	chr21	18971876	18971877	rs6517780	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum central volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.1	BTG3	rs6517780-?		3E-6				Illumina [4322238] (imputed)	N
730	chr21	19032878	19032879	rs1389994	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q21.1	NR	rs1389994-?	NR	1E-7		5.282	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
730	chr21	19032948	19032949	rs1389993	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	21q21.1	BTG3	rs1389993-C	0.410538	4E-9		5.89	z score decrease	NR [10847151] (imputed)	N
730	chr21	19032948	19032949	rs1389993	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	21q21.1	ENSG00000226956	rs1389993-C	NR	1E-9		0.018941421	[0.013-0.025] unit increase	Affymetrix [NR]	N
730	chr21	19054507	19054508	rs62241784	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	21q21.1		rs62241784-?	NR	7E-10				Illumina [1128286]	N
730	chr21	19068605	19068606	rs2824455	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.1	C21orf91	rs2824455-?	NR	5E-7	(TAG 56:5)	0.25886354	[0.16-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
730	chr21	19071527	19071528	rs74195873	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	21q21.1		rs74195873-A	NR	5E-7		1.88	[1.47-2.41]	Illumina [7105229] (imputed)	N
730	chr21	19072623	19072624	rs2824459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.1	C21orf91	rs2824459-?	NR	3E-6	(TAG 54:7)	0.26975346	[0.16-0.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
730	chr21	19072623	19072624	rs2824459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.1	C21orf91	rs2824459-?	NR	2E-7	(TAG 54:8)	0.30057472	[0.19-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
730	chr21	19072623	19072624	rs2824459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.1	C21orf91	rs2824459-?	NR	1E-7	(TAG 56:9)	0.30717048	[0.19-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
730	chr21	19097888	19097889	rs2101523	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word reading	3,468 European ancestry individuals	NA	21q21.1	Intergenic	rs2101523-C	0.75798	1E-6		0.195957	unit decrease	Illumina [6969139] (imputed)	N
730	chr21	19097888	19097889	rs2101523	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	21q21.1	NR	rs2101523-?		7E-6				Illumina [up to 6969139] (imputed)	N
730	chr21	19098870	19098871	rs9977139	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	21q21.1	Intergenic	rs9977139-C	0.770147143	4E-6		0.156014	[0.089-0.223] unit decrease	Illumina [6969139] (imputed)	N
730	chr21	19128705	19128706	rs243570	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Motor composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	21q21.1	NR	rs243570-?	NR	5E-6		1.67	[0.95-2.38] unit decrease	Illumina [552487]	N
731	chr21	19163802	19163803	rs2257906	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q21.1	NR	rs2257906-C	0.343877	1E-10		0.012531	[0.0087-0.0164] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
732	chr21	19292100	19292101	rs9983882	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	21q21.1	CHODL	rs9983882-T	NR	4E-6		0.491516	[0.28-0.7] unit decrease	Illumina [7433384] (imputed)	N
732	chr21	19332323	19332324	rs174742	34106200	Machipisa T	2021-06-09	JAMA Cardiol	Association of Novel Locus With Rheumatic Heart Disease in Black African Individuals: Findings From the RHDGen Study.	Rheumatic heart disease	601 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry cases, 454 European ancestry, South East Asian ancestry, South Asian ancestry, African ancestry and South African ancestry controls	NA	21q21.1	CHODL	rs174742-?	NR	5E-6		1.49	1.32-1.65	Illumina [7605010] (imputed)	N
732	chr21	19332991	19332992	rs17768858	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.1	NR	rs17768858-?	NR	1E-6				Affymetrix [NR]	N
732	chr21	19349772	19349773	rs2591643	31605138	Avitabile M	2019-09-07	Carcinogenesis	Neural crest-derived tumor neuroblastoma and melanoma share 1p13.2 as susceptibility locus that shows a long-range interaction with the SLC16A1 gene.	Neuroblastoma or malignant cutaneous melanoma	2,101 European ancestry neuroblastoma cases, 12,874 European ancestry malignant cutaneous melanoma cases, 27,405 European ancestry controls	2,039 European ancestry neuroblastoma cases, 508 European ancestry malignant cutaneous melanoma cases, 3,469 European ancestry controls	21q21.1	CHODL	rs2591643-C	0.39802	7E-7		1.0865418	[1.05-1.12]	NR [NR] (imputed)	N
732	chr21	19352735	19352736	rs1108858	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.1	NR	rs1108858-?		5E-6				Illumina [4322238] (imputed)	N
733	chr21	19479730	19479731	rs982274	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	21q21.1	CHODL	rs982274-?		6E-6				Illumina [859311]	N
733	chr21	19481353	19481354	rs2055011	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	21q21.1	CHODL	rs2055011-C	0.143	9E-6	(Recessive model)	1.347	[1.075-1.686]	Illumina [733202]	N
733	chr21	19511241	19511242	rs76351967	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	21q21.1		rs76351967-?	NR	1E-6		0.9720947	[0.58-1.36] unit increase	Illumina [9842460] (imputed)	N
734	chr21	19531441	19531442	rs77600076	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	21q21.1	CHODL, TMPRSS15	rs77600076-A	0.971	1E-6		0.124	[0.075-0.173] unit decrease	Illumina [6150213] (imputed)	N
734	chr21	19575925	19575926	rs62213376	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CHODL	rs62213376-?	NR	2E-9		0.975095	[NR] unit decrease	Affymetrix [NR] (imputed)	N
734	chr21	19575925	19575926	rs62213376	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CHODL	rs62213376-?	NR	1E-10	(male)	1.64947	[NR] unit decrease	Affymetrix [NR] (imputed)	N
734	chr21	19647964	19647965	rs74364162	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	21q21.1		rs74364162-?	NR	5E-7		0.7646635	[0.47-1.06] unit increase	Illumina [9842460] (imputed)	N
735	chr21	19757679	19757680	rs2824791	29187748	Morey RA	2017-11-30	Transl Psychiatry	Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls.	Nucleus accumbens volume in trauma-exposed individuals	36 African American post-traumatic stress disorder cases, 38 African American trauma-exposed controls, 30 European ancestry post-traumatic stress disorder cases, 53 European ancestry trauma-exposed controls	NA	21q21.1	TMPRSS15	rs2824791-?	NR	3E-7	(right hemisphere)			Illumina [2711511] (imputed)	N
735	chr21	19789883	19789884	rs2268438	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.1	NR	rs2268438-?		2E-6				Illumina [4322238] (imputed)	N
737	chr21	19950475	19950476	rs35014541	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	21q21.1	NR	rs35014541-A	0.305169	2E-8		0.043114755	[0.028-0.058] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
737	chr21	20018117	20018118	rs13050131	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q21.1		rs13050131-A	0.6647	4E-8		0.0081	[0.0052-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
737	chr21	20034897	20034898	rs2824981	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q21.1		rs2824981-A	0.7292	4E-8	(conditional-joint)	0.0087	[0.0056-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
738	chr21	20115605	20115606	rs59376436	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	21q21.1	MIR548XHG	rs59376436-G	0.06237	8E-6				Illumina [4404269] (imputed)	N
738	chr21	20128908	20128909	rs112643338	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	21q21.1	NR	rs112643338-?	NR	4E-6	(Latino)	1.1442	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
739	chr21	20238854	20238855	rs11700808	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	21q21.1	LOC101927797	rs11700808-A	0.5406	1E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
739	chr21	20282173	20282174	rs2825226	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score)	3,991 European and unknown ancestry individuals	NA	21q21.1	intergenic	rs2825226-A	0.33	1E-6		1.49	[1.33-1.65]	Affymetrix, Illumina [~ 8500000] (imputed)	N
739	chr21	20312611	20312612	rs78015114	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals	NA	21q21.1	AL157359.3, AL157359.4	rs78015114-T	0.94	1E-8		1.1	[0.72-1.48] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
740	chr21	20321297	20321298	rs2825231	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	21q21.1	NR	rs2825231-?	NR	2E-6		0.8523688	[0.80-0.91]	Affymetrix, Illumina [~ 10400000] (imputed)	N
740	chr21	20326335	20326336	rs74795342	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals, 194 East Asian ancestry individuals	NA	21q21.1	AL157359.3, AL157359.4	rs74795342-G	0.94	3E-9		1.1	[0.74-1.47] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
740	chr21	20326335	20326336	rs74795342	26806518	Hou L	2016-01-22	Lancet	Genetic variants associated with response to lithium treatment in bipolar disorder: a genome-wide association study.	Response to lithium treatment in bipolar disorder (continuous phenotype)	2,039 European ancestry individuals	NA	21q21.1	AL157359.3	rs74795342-G	0.94	3E-9		1.16	[0.78-1.54] unit increase	Affymetrix, Illumina [> 6000000] (imputed)	N
740	chr21	20379447	20379448	rs116784885	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.1	NR	rs116784885-C	0.01045	8E-9	(GALE)	0.1681	NR unit decrease	Illumina [1671387] (imputed)	N
740	chr21	20379447	20379448	rs116784885	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.1	NR	rs116784885-C	0.01045	5E-9	(GPX4)	0.01647	NR unit decrease	Illumina [1671387] (imputed)	N
740	chr21	20398252	20398253	rs2211932	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	21q21.1	NR	rs2211932-C	0.36	4E-6		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
740	chr21	20404236	20404237	rs2825295	34124712	Sherva R	2021-02-28	Explor Med	Genome-wide association study of phenotypes measuring progression from first cocaine or opioid use to dependence reveals novel risk genes.	Cocaine dependence (time to event)	3,554 African American cases, 478 African American controls, 2,712 European ancestry cases, 915 European ancestry controls	572 African American cases, 416 African American controls, 759 European ancestry cases, 1,620 European ancestry controls	21q21.1	AL157359.3-AP000431.1	rs2825295-T	NR	3E-8		1.14	NR	Illumina [NR] (imputed)	N
741	chr21	20536648	20536649	rs2825388	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	21q21.1	intergenic	rs2825388-A	0.4	8E-6	(maternal criticism)	1.06	[NR] unit increase	Perlegen [429981]	N
742	chr21	20708845	20708845	rs200193477	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (white matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	21q21.1	intergenic	rs200193477-A	NR	1E-6		2.03	percent increase	Affymetrix [8762422] (imputed)	N
743	chr21	20777393	20777394	rs9975685	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.1	NR	rs9975685-?	NR	1E-7				Affymetrix [NR]	N
743	chr21	20786474	20786475	rs79890063	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	21q21.1	NR	rs79890063-A	0.12	7E-7		0.22	[0.14-0.3] unit decrease	Illumina [14638245] (imputed)	N
744	chr21	20961514	20961515	rs9808803	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	21q21.1		rs9808803-?	NR	9E-6		0.5922104	[0.33-0.85] unit decrease	Illumina [9875426] (imputed)	N
745	chr21	21022167	21022168	rs62210650	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		21q21.1	LOC105372744	rs62210650-?	NR	7E-7	(AA)	0.064	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
745	chr21	21057716	21057717	rs11088751	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (bacterial taxa)	858 Metropolitan French ancestry individuals	NA	21q21.1	NR	rs11088751-?	NR	2E-8	(Sutterella_stercoricanis)	2.47311	[2.16-2.79]	Illumina [5293637] (imputed)	N
745	chr21	21076108	21076109	rs1850590	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	21q21.1	NR	rs1850590-?	NR	1E-6		1.62	[1.5-1.75]	Illumina [539000] (imputed)	N
745	chr21	21076108	21076109	rs1850590	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	21q21.1	Intergenic	rs1850590-A	0.685282857	3E-6		0.160206	[0.093-0.228] unit increase	Illumina [6952813] (imputed)	N
745	chr21	21077613	21077614	rs73893899	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.1	NR	rs73893899-T	0.01045	3E-8	(ACADS)	1.002	NR unit increase	Illumina [1671387] (imputed)	N
746	chr21	21107886	21107887	rs150652277	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	21q21.1	NR	rs150652277-?	NR	3E-6		0.2447	[0.14-0.35] unit increase	Illumina [at least 560000] (imputed)	N
746	chr21	21205831	21205832	rs147393614	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.1	NR	rs147393614-T	0.01394	3E-9	(IGHG2)	1.709	NR unit increase	Illumina [1671387] (imputed)	N
747	chr21	21347155	21347156	rs67213764	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	21q21.1	NCRNA00320	rs67213764-G	0.261	9E-6	(EA)	1.48	[NR]	Illumina [6728637] (imputed)	N
748	chr21	21415692	21415693	rs2825968	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q21.1	NR	rs2825968-C	0.512	1E-8		0.00619684	[0.0041-0.0083] unit increase	NR [9732723] (imputed)	N
748	chr21	21415692	21415693	rs2825968	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	21q21.1	TMPRSS15, NCAM2	rs2825968-T	0.49	6E-6	(Latino)	1.4492754		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
748	chr21	21418166	21418167	rs8126652	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q21.1		rs8126652-A	0.5	3E-8		0.006	[0.004-0.008] unit decrease	NR [NR] (imputed)	N
751	chr21	21772339	21772340	rs2205502	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	21q21.1	LOC101927797, LINC00320	rs2205502-T	0.24	3E-6		1.37		Illumina [8974355] (imputed)	N
751	chr21	21777729	21777730	rs1888414	19668339	Potkin SG	2009-08-07	PLoS One	Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.	Hippocampal atrophy	162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases	NA	21q21.1	FDPSP	rs1888414-?	NR	2E-7				Illumina [516645]	N
751	chr21	21812045	21812046	rs1786426	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	21q21.1	NR	rs1786426-?	NR	7E-6	(AA)	5.08	[3.96-6.2]	Illumina [905956]	N
751	chr21	21812971	21812972	rs2989314	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	21q21.1	intergenic	rs2989314-C	0.12	3E-6	(AA)	9.79	[NR]	Illumina [905956]	N
751	chr21	21814837	21814838	rs1735894	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	21q21.1	NR	rs1735894-?	NR	2E-6	(AA)	5.39	[4.47-6.31]	Illumina [905956]	N
751	chr21	21820407	21820408	rs1735884	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	intergenic	rs1735884-G	0.214	7E-6	(Fat free mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
751	chr21	21820407	21820408	rs1735884	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	intergenic	rs1735884-G	0.214	4E-6	(Protein deposition )	0.04	[NR] kcal/d increase	Illumina [899892]	N
751	chr21	21820407	21820408	rs1735884	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q21.1	intergenic	rs1735884-G	0.214	4E-6	(Protein )	0.04	[NR] kg/y increase	Illumina [899892]	N
751	chr21	21859727	21859728	rs189451576	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	21q21.1	NR	rs189451576-A	0.014	6E-6		3.0	[1.86-4.83]	Illumina [8672852] (imputed)	N
751	chr21	21885301	21885302	rs2826340	18951430	Anney RJ	2008-10-24	Am J Med Genet B Neuropsychiatr Genet	Conduct disorder and ADHD: evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study.	Attention deficit hyperactivity disorder and conduct disorder	938 European ancestry trios	NA	21q21.1	intergenic	rs2826340-T	0.17	2E-6				Perlegen [378332]	N
753	chr21	22035476	22035477	rs2826435	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	21q21.1	NR	rs2826435-?	NR	2E-7			[NR]	Illumina [5779266] (imputed)	N
753	chr21	22095490	22095491	rs56342119	34777790	A Christensen M	2021-10-13	Ann Med Surg (Lond)	An assessment of the effect of the genotype on postoperative venous thromboembolism risk in 140,831 surgical patients.	Venous thromboembolism	6,260 cases, 355,414 controls	NA	21q21.1		rs56342119-?	NR	4E-35				Affymetrix [254068]	N
753	chr21	22096543	22096544	rs2128344	32005708	Forgetta V	2020-01-31	Diabetes	Rare Genetic Variants of Large Effect Influence Risk of Type 1 Diabetes.	Type 1 diabetes	9,266 European ancestry cases, 15,574 European ancestry controls	4,329 European ancestry cases, 9,543 European ancestry controls	21q21.1	intergenic	rs2128344-A	0.0055	8E-12		2.12	[1.71-2.63]	Affymetrix, Illumina [9061522] (imputed)	N
753	chr21	22113447	22113448	rs34328150	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	21q21.1		rs34328150-?	NR	4E-8		0.0182	NR unit decrease	NR [4425810] (imputed)	N
754	chr21	22234962	22234963	rs742720	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	21q21.1	NR	rs742720-T	NR	6E-6	(GEE model)	0.73415	[0.42-1.05] unit decrease	NR [NR] (imputed)	N
754	chr21	22257477	22257478	rs7510312	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		21q21.1	NR	rs7510312-A	0.316499	9E-6		1.0696	[1.03863-1.1015]	Affymetrix [16499239] (imputed)	N
754	chr21	22276334	22276335	rs2826602	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	21q21.1	PRSS7, NCAM2	rs2826602-?	0.34	2E-7		18.17	unit decrease	Illumina [120975] (imputed)	N
755	chr21	22366345	22366346	rs1999292	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q21.1		rs1999292-T	0.406	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
755	chr21	22378126	22378127	rs529138199	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	21q21.1	NCAM2	rs529138199-C	0.06069000000000002	2E-7		1.23	[1.14-1.33]	Affymetrix, Illumina [~ 11700000] (imputed)	N
755	chr21	22380043	22380044	rs11911765	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM2	5,361 Icelandic ancestry individuals	NA	21q21.1		rs11911765-C	0.4869	8E-20		0.171977	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
755	chr21	22380043	22380044	rs11911765	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q21.1	NR	rs11911765-C	0.495	1E-13	(Neural cell adhesion molecule 2, NCAM2.6507.16.3)	0.18	[0.14-0.22] unit increase	Affymetrix [10572788] (imputed)	N
755	chr21	22389689	22389690	rs35384524	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to direct-acting antiviral treatment in hepatitis C virus genotype 3	325 European, Asian and unknown ancestry responders, 84 European, Asian and unknown ancestry non-responders	NA	21q21.1	NR	rs35384524-?	NR	5E-7		3.5714285	NR	Affymetrix [~ 18000000] (imputed)	N
756	chr21	22478579	22478580	rs145889349	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	21q21.1		rs145889349-G	0.01324	2E-6		2.823	[1.835-4.342]	Affymetrix [7975321] (imputed)	N
756	chr21	22487853	22487854	rs2826659	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	21q21.1	NR	rs2826659-A	0.75	7E-6		1.35	[1.21-1.49]	Illumina [4058415] (imputed)	N
758	chr21	22680390	22680390	rs111478044	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	21q21.1		rs111478044-?	NR	9E-7	(ser_lg_lmp)	2.0		Illumina [11595112] (imputed)	N
758	chr21	22689343	22689344	rs11088859	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	21q21.1	NCAM2	rs11088859-?	NR	4E-8	(waist)			Illumina [~ 550000]	N
758	chr21	22695320	22695321	rs232464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	21q21.1	Intergenic	rs232464-T	0.2219	2E-10	(MTAG)	0.0126	[0.0087-0.0165] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
758	chr21	22695320	22695321	rs232464	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	21q21.1	Intergenic	rs232464-T	0.2275	2E-8	(MTAG)	0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
758	chr21	22698334	22698335	rs232473	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q21.1	NR	rs232473-?	NR	3E-6		4.698	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
758	chr21	22718156	22718157	rs9977306	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q21.1	Intergenic	rs9977306-A	0.2174	1E-11	(MTAG)	0.0107	[0.0076-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
758	chr21	22734408	22734409	rs232496	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q21.1		rs232496-T	0.3657	7E-10		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
758	chr21	22736412	22736413	rs232499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q21.1		rs232499-A	0.6334	5E-10	(conditional-joint)	0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
758	chr21	22780047	22780048	rs62207434	33592630	Herrera-Rivero M	2021-02-16	Thromb Haemost	Single- and Multimarker Genome-Wide Scans Evidence Novel Genetic Risk Modifiers for Venous Thromboembolism.	Venous thromboembolism	964 European ancestry cases, 899 European ancestry controls	NA	21q21.1	NCAM2	rs62207434-T	NR	9E-9		0.0937	[0.04184-0.2098]	Illumina [484621]	N
759	chr21	22817513	22817514	rs116800392	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM2	5,361 Icelandic ancestry individuals	NA	21q21.1		rs116800392-A	0.03032	4E-10		0.344332	[0.24-0.45] unit increase	Illumina [7506463] (imputed)	N
759	chr21	22817576	22817577	rs6518105	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	21q21.1	NCAM2	rs6518105-A	0.516019876708878	2E-7	(G_Anaerostipes_RNT)	0.112775	[0.07-0.155] unit increase	Illumina [7711310] (imputed)	N
759	chr21	22835945	22835946	rs2826851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCAM2	5,361 Icelandic ancestry individuals	NA	21q21.1		rs2826851-G	0.2646	9E-64		0.348916	[0.31-0.39] unit increase	Illumina [7506463] (imputed)	N
759	chr21	22835945	22835946	rs2826851	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q21.1	NCAM2	rs2826851-A	0.7328125	2E-42	(NCAM2, 6507_16_3)	0.36953086	[0.32-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
759	chr21	22839718	22839720	rs34963977	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q21.1	NCAM2	rs34963977-T	0.35	5E-36	(Neural cell adhesion molecule 2, NCAM2.6507.16.3)	0.34	[0.28-0.4] unit increase	Affymetrix [10572788] (imputed)	N
759	chr21	22910115	22910116	rs2826891	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	21q21.1	NCAM2	rs2826891-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
760	chr21	23033103	23033104	rs11088872	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	21q21.1	NR	rs11088872-?	NR	2E-6		0.03827	[0.023-0.054] unit decrease	Affymetrix [9658292] (imputed)	N
761	chr21	23128172	23128173	rs117322572	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	21q21.1	NCAM2	rs117322572-T	NR	9E-6		0.751376	[0.42-1.08] unit increase	Illumina [at least 950000] (imputed)	N
761	chr21	23141844	23141845	rs2226441	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	21q21.1	intergenic	rs2226441-?	NR	3E-6		2.45	[1.68-3.56]	Illumina [4196861] (imputed)	N
761	chr21	23144601	23144602	rs2827025	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	21q21.1	NR	rs2827025-?	NR	2E-6		2.521	[NR]	Illumina [4196861] (imputed)	N
761	chr21	23145949	23145950	rs2014791	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	21q21.1	NCAM2, C21orf74	rs2014791-A	0.379	7E-6		2.15	[1.53-3.03]	Illumina [1556551]	N
761	chr21	23151442	23151443	rs7281353	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	21q21.1	NCRNA00317	rs7281353-?	NR	8E-6	(AA)			Affymetrix, Illumina [NR] (imputed)	N
761	chr21	23151442	23151443	rs7281353	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	21q21.1	NCRNA00317	rs7281353-?		6E-7	(AA)	0.275	[0.12-0.43] unit increase	Affymetrix, Illumina [NR] (imputed)	N
762	chr21	23200133	23200134	rs73227491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	21q21.1	LINC01425	rs73227491-C	0.0019	8E-6		1.1101	[0.62-1.6] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
762	chr21	23287213	23287214	rs36116853	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	21q21.1	AP000472.3	rs36116853-T	0.0419	5E-6		0.0763	[0.044-0.109] unit increase	Affymetrix, Illumina [NR] (imputed)	N
765	chr21	23631675	23631676	rs2827312	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	21q21.1	intergenic	rs2827312-G	0.32	8E-6		0.089	[NR] unit increase	Illumina [~ 300000]	N
765	chr21	23664049	23664050	rs2827352	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.1	NR	rs2827352-?	NR	1E-12				Affymetrix [NR]	N
765	chr21	23703594	23703595	rs9975238	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.1	NR	rs9975238-?	NR	5E-9				Affymetrix [NR]	N
765	chr21	23709881	23709882	rs191146367	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	21q21.1	Z49979	rs191146367-G	0.0031	1E-30		18.3404	[15.21-21.47] mmHg increase	Affymetrix [NR] (imputed)	N
765	chr21	23713363	23713364	rs112385970	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	21q21.1	NR	rs112385970-G	NR	5E-7		3.71	[NR]	Illumina [NR] (imputed)	N
766	chr21	23847109	23847110	rs9984417	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	21q21.1	MAPK6PS2, AP000959.2	rs9984417-T	0.61	9E-7		1.16	[1.09-1.23]	Affymetrix, Illumina [1722107] (imputed)	N
767	chr21	23889905	23889906	rs12627019	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	Triglyceride levels x loop diuretics use interaction	2,117 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 784 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	21q21.1	LINC01687, LINC00308	rs12627019-?	NR	8E-7	(EA)	0.0101	[0.0097-0.0105] mmol/L increase	Affymetrix, Illumina [NR] (imputed)	N
767	chr21	23972322	23972323	rs12482963	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	21q21.2	Intergenic	rs12482963-?	NR	4E-6		1.393	[NR]	Affymetrix [492217] (imputed)	N
767	chr21	23975805	23975806	rs2827634	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	21q21.2	intergenic	rs2827634-G	0.32766	5E-6		0.753245	[0.44-1.07] unit decrease	NR [7263501] (imputed)	N
768	chr21	24101360	24101361	rs112934938	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs112934938-T	0.01045	8E-10	(HBD)	6.505	NR unit increase	Illumina [1671387] (imputed)	N
768	chr21	24101360	24101361	rs112934938	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs112934938-T	0.01045	2E-8	(CA1)	3.448	NR unit increase	Illumina [1671387] (imputed)	N
769	chr21	24166143	24166144	rs1513737	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	21q21.2	LINC00308, D21S2088E	rs1513737-T	0.461	4E-6		0.026	[0.014-0.038] unit increase	Illumina [7358575] (imputed)	N
769	chr21	24167413	24167414	rs947860015	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs947860015-A	0.01045	5E-10	(HBD)	5.503	NR unit increase	Illumina [1671387] (imputed)	N
769	chr21	24167413	24167414	rs947860015	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs947860015-A	0.01045	3E-9	(MACROD1)	0.01462	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr21	24167413	24167414	rs947860015	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs947860015-A	0.01045	3E-8	(HBG1)	15.76	NR unit increase	Illumina [1671387] (imputed)	N
769	chr21	24198814	24198815	rs7279441	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	21q21.2	intergenic	rs7279441-G	0.14	8E-6		0.03	[NR] unit increase	Illumina [2380486] (imputed)	N
770	chr21	24288847	24288848	rs115898021	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	21q21.2	NR	rs115898021-?	NR	4E-7		0.14149	[0.087-0.196] unit increase	Affymetrix [805426] (imputed)	N
770	chr21	24356506	24356507	rs66795148	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	21q21.2	NR	rs66795148-T	NR	7E-6		0.086	[0.049-0.123] unit increase	Illumina [6319684] (imputed)	N
771	chr21	24416562	24416563	rs7275208	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q21.2	NR	rs7275208-C	0.349	1E-9		0.00690143	[0.0047-0.0091] unit decrease	NR [9732723] (imputed)	N
771	chr21	24420501	24420502	rs4816890	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	NA	21q21.2	NCAM2	rs4816890-?	0.363	2E-6	(opposite direction)	1.1111112	[1.06-1.16]	Illumina [up to 6000000] (imputed)	N
771	chr21	24492712	24492713	rs2827879	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.2	NR	rs2827879-?	NR	4E-10				Affymetrix [NR]	N
771	chr21	24493294	24493307	rs200678953	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	21q21.2	D21S2088E	rs200678953-T	0.374	2E-8		0.0142	[0.0085-0.0199] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
772	chr21	24572912	24572913	rs1870464	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	21q21.2	NR	rs1870464-A	0.7874	7E-7		1.4676	[0.89-2.05] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
773	chr21	24735151	24735151	rs3079677	28521775	Manichaikul A	2017-05-18	Respir Res	Genome-wide association study of subclinical interstitial lung disease in MESA.	Subclinical trait of interstitial lung disease (basilar peel-core ratio of high attentuation areas on CT scan)	2,434 European ancestry individuals, 2,470 African American individuals, 2,065 Hispanic individuals, 702 Chinese ancestry individuals	NA	21q21.2	D21S2088E	rs3079677-T	0.43	2E-8		0.024	[0.016-0.032] unit increase	Affymetrix [at least 897981] (imputed)	N
774	chr21	24812883	24812884	rs62208174	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	21q21.2		rs62208174-?	NR	1E-8				Affymetrix [NR] (imputed)	N
774	chr21	24828676	24828677	rs111436800	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	21q21.2	D21S2088E	rs111436800-?	NR	5E-6		1.6282058		Affymetrix, Illumina [2928658] (imputed)	N
774	chr21	24831321	24831322	rs62208194	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	21q21.2		rs62208194-?	NR	1E-8				Affymetrix [NR] (imputed)	N
774	chr21	24837634	24837635	rs2828182	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.2	MRPL39	rs2828182-?	NR	3E-6	(CE 20:3)	0.2312971	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
775	chr21	24929108	24929109	rs12482425	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	21q21.2	AP000459.7	rs12482425-G	0.686	9E-6	(EA)	1.5151515	[NR]	Illumina [6728637] (imputed)	N
775	chr21	24949979	24949980	rs2828279	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.2	NCAM2	rs2828279-?	NR	2E-6	(hypoxanthine)	0.1951533	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
776	chr21	25105210	25105211	rs2828478	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	21q21.2	intergenic	rs2828478-A		2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
776	chr21	25105210	25105211	rs2828478	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	21q21.2	NR	rs2828478-A	NR	4E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
776	chr21	25143118	25143119	rs2828520	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	21q21.2	intergenic	rs2828520-G	0.31	4E-7		1.35		Affymetrix [671424]	N
776	chr21	25157993	25157994	rs2828529	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.2	NR	rs2828529-?	NR	2E-29				Affymetrix [NR]	N
778	chr21	25309611	25309612	rs59004290	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-590 sp000431135 abundance in stool	5,959 Finnish ancestry individuals	NA	21q21.2		rs59004290-G	0.0124432	2E-8		0.217067	[0.14-0.29] unit increase	Illumina [7980478] (imputed)	N
778	chr21	25346340	25346341	rs147991442	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (forehead)	6,254 Latin American individuals	NA	21q21.2	intergenic	rs147991442-A	NR	6E-10		0.2	[NR] unit increase	Illumina [8703729] (imputed)	N
778	chr21	25357225	25357226	rs76747345	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	21q21.2	NR	rs76747345-A	NR	7E-12		0.545	[0.39-0.7] unit decrease	Affymetrix [7701190] (imputed)	N
779	chr21	25437504	25437505	rs2828785	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Urinary albumin-to-creatinine ratio	up to 54,450 European ancestry individuals	NA	21q21.2	Intergenic	rs2828785-T	0.27	8E-6		0.038	[0.022-0.054] unit decrease	Affymetrix, Illumina [2191945] (imputed)	N
779	chr21	25505328	25505329	rs11087905	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	21q21.2	NR	rs11087905-C	NR	5E-7		0.0941	[0.057-0.131] SD units decrease	NR [10700000] (imputed)	N
779	chr21	25558436	25558437	rs183916829	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	21q21.2		rs183916829-C	0.0034291	3E-6		0.26806	[0.16-0.38] unit decrease	Affymetrix [15580782] (imputed)	N
779	chr21	25558907	25558908	rs1910605	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	21q21.2	AP000470.2	rs1910605-G	0.334325	5E-7	(men)	0.133378	[0.082-0.185] mm2 increase	Affymetrix [532676] (imputed)	N
779	chr21	25558907	25558908	rs1910605	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	21q21.2	AP000470.2 (0 kb, intron/Intron/MODIFIER | nc-RNA/Non coding transcript/MODIFIER)	rs1910605-G	0.334325	9E-7	(men)	0.168045	[0.1-0.23] mm2 increase	Affymetrix [532676] (imputed)	N
780	chr21	25592291	25592292	rs73140929	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	21q21.2	intergenic	rs73140929-C	0.00982940919372705	5E-6	(F_Streptococcaceae_HB)	1.3253	[0.76-1.89] unit decrease	Illumina [7711310] (imputed)	N
780	chr21	25684968	25684969	rs142600408	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	21q21.2	NR	rs142600408-T	NR	5E-6	(African)	1.0342	[0.59-1.48] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
781	chr21	25699064	25699065	rs183888832	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q21.2	NR	rs183888832-?	NR	2E-6		4.795	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
781	chr21	25781647	25781648	rs2829047	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	21q21.2	LINC01689, LINC01684	rs2829047-?		1E-6	(African American)	0.118722744	[0.071-0.166] unit increase	Illumina [13620258] (imputed)	N
782	chr21	25851192	25851193	rs57936699	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Thalamus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.2	NR	rs57936699-?		9E-6				Illumina [4322238] (imputed)	N
782	chr21	25913238	25913239	rs721146	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	21q21.2	VN2R20P, RPL13AP7	rs721146-A	0.21	4E-6		1.17	[1.09-1.25]	NR [NR]	N
783	chr21	26028889	26028890	rs2015560	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	21q21.2	intergenic	rs2015560-?	NR	2E-6		2.7808676	[1.83-4.23]	Illumina [5407269] (imputed)	N
783	chr21	26031867	26031868	rs2829235	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	21q21.2		rs2829235-?	NR	7E-6	(overall)	1.18		Illumina [11595112] (imputed)	N
784	chr21	26173209	26173210	rs2829385	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	21q21.2	NR	rs2829385-?	NR	9E-7	(ACE metric)	1.03722	[0.63-1.45] unit increase	Illumina [5293637] (imputed)	N
784	chr21	26173209	26173210	rs2829385	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	21q21.2	NR	rs2829385-?	NR	4E-6	(Chao1 richness estimate)	0.596895	[0.34-0.85] unit increase	Illumina [5293637] (imputed)	N
784	chr21	26173209	26173210	rs2829385	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	21q21.2	NR	rs2829385-?	NR	1E-6	(Richness)	15.924	[9.54-22.3] unit increase	Illumina [5293637] (imputed)	N
784	chr21	26205700	26205701	rs9975149	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	21q21.2	NR	rs9975149-T	NR	3E-6		0.076	[0.044-0.108] SD units decrease	NR [10700000] (imputed)	N
784	chr21	26210483	26210484	rs73147817	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars opercularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.2	NR	rs73147817-?		5E-6				Illumina [4322238] (imputed)	N
785	chr21	26279350	26279351	rs2829459	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	21q21.2	intergenic	rs2829459-?	NR	3E-6	(DMFS5mand)			Illumina [518997]	N
786	chr21	26356176	26356177	rs2829495	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.2	JAM2	rs2829495-?	NR	4E-6	(anthranilic acid)	0.3576919	[0.21-0.51] unit decrease	Affymetrix [at least 2500000] (imputed)	N
787	chr21	26574346	26574346	rs199894228	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	21q21.2		rs199894228-?	NR	8E-9				Illumina [1084750]	N
788	chr21	26645082	26645083	rs9977253	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	21q21.2	intergenic	rs9977253-G	0.33	5E-6	(Steatosis)	0.76	[NR] unit increase	Illumina [324623]	N
788	chr21	26649759	26649760	rs76252969	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	21q21.2	LINC00158	rs76252969-?	NR	5E-6		1.68319		Affymetrix, Illumina [2928658] (imputed)	N
788	chr21	26722431	26722432	rs9977670	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-510 sp002432425 abundance in stool	5,959 Finnish ancestry individuals	NA	21q21.2		rs9977670-A	0.0234336	7E-9		0.129175	[0.086-0.173] unit increase	Illumina [7980478] (imputed)	N
789	chr21	26756968	26756969	rs59551326	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	21q21.2	intergenic	rs59551326-?	0.137	9E-7	(AA)	0.0155	NR unit decrease (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
789	chr21	26756968	26756969	rs59551326	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	21q21.2	intergenic	rs59551326-A	0.868	5E-6	(AA)	1.3495277	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
789	chr21	26761057	26761058	rs7282265	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	21q21.2	NR	rs7282265-?	NR	8E-6		0.1125	[0.063-0.161] unit increase	Illumina [at least 560000] (imputed)	N
789	chr21	26769506	26769507	rs1547233	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	21q21.2	LINC00158	rs1547233-?		6E-9		1.17	[1.11-1.24]	Illumina [NR] (imputed)	N
789	chr21	26826513	26826514	rs8127977	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)	294 Japanese ancestry cases, 2,249 Japanese ancestry controls	NA	21q21.2	NCRNA00158	rs8127977-A	0.722	2E-6	(Dominant model)	1.587	[1.282-1.966]	Illumina [733202]	N
789	chr21	26829776	26829777	rs12483240	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q21.2	NR	rs12483240-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
789	chr21	26847403	26847404	rs114482911	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.2	NR	rs114482911-T	0.02091	3E-8	(UBE2K)	0.0222	NR unit decrease	Illumina [1671387] (imputed)	N
790	chr21	26878461	26878462	rs2829784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	21q21.3		rs2829784-?	NR	1E-30				NR [~ 8900000] (imputed)	N
790	chr21	26878641	26878642	rs2829786	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	21q21.3	MRPL39	rs2829786-?	NR	2E-9		1.0790979	NR	Affymetrix [9154080] (imputed)	N
790	chr21	26956280	26956281	rs2298369	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	21q21.3	LINC00515, MRPL39	rs2298369-?	NR	4E-7		1.2475969		Affymetrix, Illumina [2928658] (imputed)	N
790	chr21	26956280	26956281	rs2298369	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	21q21.3	LINC00515, MRPL39	rs2298369-?	NR	3E-7	(females)	1.3267368		Affymetrix, Illumina [2928658] (imputed)	N
791	chr21	27002376	27002377	rs17001239	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	21q21.3	JAM2	rs17001239-?	0.1166	2E-6	(PRM)			Illumina [475971]	N
791	chr21	27004108	27004109	rs9982086	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	21q21.3	MRPL39, JAM2	rs9982086-?	NR	9E-6	(adjusted for dose, GFR & AST)	1.06	unit decrease (EA)	Illumina [610255]	N
791	chr21	27008289	27008290	rs17001240	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q21.3	NR	rs17001240-?	NR	2E-6		4.755	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
791	chr21	27064338	27064339	rs8129913	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	21q21.3	JAM2, APP	rs8129913-?	0.43	3E-6		0.43	[0.25-0.61] unit increase	Illumina [6112217] (imputed)	N
791	chr21	27087043	27087044	rs2829877	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	21q21.3	NR	rs2829877-?	NR	8E-6				Illumina [1735619]	N
791	chr21	27091974	27091975	rs73335986	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	21q21.3		rs73335986-A	0.865391	7E-6		0.012371	[0.0069-0.0178] unit decrease	Illumina [13900000] (imputed)	N
791	chr21	27097457	27097458	rs11909995	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension-negative individuals	796 European ancestry cases, 4,010 European ancestry controls	NA	21q21.3	ATP5J	rs11909995-?	0.176	4E-6		1.6207455	[1.51-1.74]	NR [~ 2000000] (imputed)	N
791	chr21	27129756	27129760	rs144338599	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	21q21.3	GABPA	rs144338599-A	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
792	chr21	27140535	27140536	rs71651656	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	21q21.3	GABPA	rs71651656-C	0.012	7E-8		7.44	[3.58-15.45]	Illumina [7206774] (imputed)	N
792	chr21	27214290	27214291	rs1394839	29959729	Zhong XL	2018-06-29	Neurotox Res	A Genome-Wide Association Study of ?-Synuclein Levels in Cerebrospinal Fluid.	Cerebrospinal fluid ?-synuclein levels	59 European ancestry individuals with normal cognition, 101 European ancestry individuals with mild cognitive impairment, 49 European ancestry Alzheimer's disease cases	NA	21q21.3	APP	rs1394839-G	0.1691	2E-7		0.2238	unit increase	Illumina [519442]	N
792	chr21	27216838	27216839	rs13049669	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	21q21.3	GABPA, APP	rs13049669-A	NR	7E-6		0.890119	[0.84-0.94]	Illumina [11610548] (imputed)	N
792	chr21	27216838	27216839	rs13049669	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	21q21.3	GABPA, APP	rs13049669-A	NR	3E-7		0.0707	unit decrease	Illumina [15409056] (imputed)	N
792	chr21	27226106	27226107	rs143398227	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	21q21.3		rs143398227-C	NR	4E-9		0.1035	[0.069-0.138] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
792	chr21	27258000	27258001	rs7276737	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q21.3		rs7276737-?	NR	1E-8				NR [~ 8900000] (imputed)	N
793	chr21	27264107	27264108	rs63750066	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	21q21.3		rs63750066-?	NR	2E-7		62.2412	[60.69-63.79]	NR [663083]	N
794	chr21	27473874	27473875	rs2154481	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	21q21.3	APP	rs2154481-C	0.462	1E-11		0.95	[0.94-0.96]	Affymetrix, Illumina [up to 14542816] (imputed)	N
794	chr21	27505171	27505172	rs73168384	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.3	NR	rs73168384-A	0.02613	2E-8	(WARS)	0.04118	NR unit increase	Illumina [1671387] (imputed)	N
794	chr21	27520930	27520931	rs2154482	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	21q21.3		rs2154482-?	NR	8E-10				Illumina [NR] (imputed)	N
795	chr21	27528568	27528569	rs45456598	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	21q21.3	APP	rs45456598-A	NR	2E-6		0.35772085	[0.19-0.52] unit decrease	Illumina [> 6200000] (imputed)	N
795	chr21	27534260	27534261	rs4817090	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	21q21.3	ADAMTS1	rs4817090-?	NR	1E-7		0.0530908	unit increase	NR [10687077] (imputed)	N
795	chr21	27593539	27593540	rs1892676	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	21q21.3	NR	rs1892676-C	0.341	7E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 14542816] (imputed)	N
795	chr21	27627310	27627311	rs8134954	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q21.3	NR	rs8134954-?	NR	2E-6		4.778	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
795	chr21	27627447	27627448	rs188781619	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	21q21.3	NR	rs188781619-?	NR	4E-6		1.6188	[0.83-2.41] unit increase	Illumina [at least 560000] (imputed)	N
796	chr21	27688776	27688777	rs143691392	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	21q21.3	NR	rs143691392-?	NR	1E-9				Illumina [7760689] (imputed)	N
796	chr21	27716653	27716654	rs9975851	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	21q21.3	CYYR1	rs9975851-T	0.57	4E-6	(No asthma)	1.17	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
796	chr21	27770610	27770611	rs222151	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced composite toxicity (either hypertension or proteinuria)	1,039 European ancestry individuals	NA	21q21.3	intergenic	rs222151-?	0.22	9E-6		0.73	unit decrease	Illumina [828141]	N
797	chr21	27824284	27824285	rs219649	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	21q21.3	CYYR1-AS1	rs219649-A	0.3	2E-6				Illumina [331281]	N
797	chr21	27858938	27858939	rs71329836	32109663	Feitosa MF	2020-02-14	Atherosclerosis	Gene discovery for high-density lipoprotein cholesterol level change over time in prospective family studies.	HDL cholesterol levels	3,567 European ancestry men, 4,171 European ancestry women	NA	21q21.3	CYYR1	rs71329836-A	0.15	9E-7		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [6523511] (imputed)	N
797	chr21	27872160	27872161	rs222158	26491034	Sarzynski MA	2015-10-21	Br J Sports Med	Genomic and transcriptomic predictors of triglyceride response to regular exercise.	Response to exercise (triglyceride level interaction)	478 European ancestry individuals from 99 families	NA	21q21.3	CYYR1	rs222158-A	0.67	2E-6		0.38	[NR] unit decrease	Illumina [2396589] (imputed)	N
797	chr21	27873894	27873895	rs2830261	29478026	Shahin MH	2018-02-24	J Am Heart Assoc	Genome-Wide Association Approach Identified Novel Genetic Predictors of Heart Rate Response to ?-Blockers.	Heart rate response to beta blockers (atenolol monotherapy)	228 European American hypertensive individuals, 146 African American hypertensive individuals	NA	21q21.3	NR	rs2830261-T	0.13	3E-6	(AA)	5.53	[3.3-7.76] bpm increase	Illumina [at least 1100000] (imputed)	N
798	chr21	27977685	27977686	rs6650836	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	6,148 African American individuals	NA	21q21.3	NR	rs6650836-A	0.7998	5E-8		0.9065	[0.58-1.23] unit decrease	Affymetrix, Illumina [12989038] (imputed)	N
798	chr21	28003046	28003047	rs372255102	28040410	Meyers JL	2016-12-28	Int J Psychophysiol	A genome wide association study of fast beta EEG in families of European ancestry.	Fast beta electroencephalogram	1,564 European ancestry individuals from 117 alcohol dependence affected families	NA	21q21.3	intergenic	rs372255102-T	0.328	5E-7		0.118	[0.073-0.163] unit decrease	Illumina [12973748] (imputed)	N
798	chr21	28031226	28031227	rs996634	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs996634-A	NR	4E-6	(female)	0.1323	[0.076-0.189] unit increase	Illumina [11133794] (imputed)	N
798	chr21	28031449	28031450	rs200706499	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs200706499-?	NR	8E-6	(female)	0.1511	[0.085-0.218] unit increase	Illumina [11133794] (imputed)	N
798	chr21	28032938	28032939	rs150371866	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs150371866-?	NR	8E-6	(female)	0.1358	[0.076-0.196] unit increase	Illumina [11133794] (imputed)	N
798	chr21	28037394	28037394	rs143567221	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs143567221-?	NR	8E-6	(female)	0.1362	[0.076-0.196] unit decrease	Illumina [11133794] (imputed)	N
798	chr21	28037862	28037866	rs148337019	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs148337019-?	NR	8E-6	(female)	0.1422	[0.08-0.205] unit increase	Illumina [11133794] (imputed)	N
798	chr21	28042973	28042974	rs60407241	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q21.3	NR	rs60407241-?	NR	9E-6	(female)	0.1352	[0.075-0.195] unit increase	Illumina [11133794] (imputed)	N
799	chr21	28051049	28051050	rs9975780	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	21q21.3	intergenic	rs9975780-T	0.105	2E-17		0.33	[0.25-0.4] unit decrease	Affymetrix [339439]	N
799	chr21	28086429	28086430	rs117844232	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q21.3	NR	rs117844232-?	NR	1E-9		6.096	NR z score decrease	Illumina [at least 830937] (imputed)	N
799	chr21	28101978	28101979	rs9967959	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		CYYR1/ADAMTS1	rs9967959-T	0.14	2E-6		0.13	[0.071-0.189] unit decrease	Illumina [3700000] (imputed)	N
799	chr21	28119751	28119752	rs7280965	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.3	NR	rs7280965-G	0.01394	2E-8	(ALDH5A1)	0.2384	NR unit increase	Illumina [1671387] (imputed)	N
799	chr21	28121371	28121372	rs146028783	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	21q21.3	ADAMTS1	rs146028783-A	NR	6E-6		0.02571	[0.015-0.037] unit increase	Illumina [NR] (imputed)	N
799	chr21	28131289	28131290	rs2830472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	21q21.3		rs2830472-?	NR	2E-12				NR [~ 8900000] (imputed)	N
799	chr21	28141809	28141810	rs73185805	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	21q21.3	NR	rs73185805-?	NR	7E-6		0.00656	[0.0037-0.0094] unit decrease	Affymetrix [9658292] (imputed)	N
799	chr21	28146188	28146189	rs2830487	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	21q21.3	intergenic	rs2830487-A		5E-7		0.2494	unit increase	Illumina [5767231] (imputed)	N
799	chr21	28146188	28146189	rs2830487	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	21q21.3	intergenic	rs2830487-A	NR	2E-7		0.2543	unit increase	Illumina [5767231] (imputed)	N
799	chr21	28148190	28148191	rs2830489	33589840	Schwartzentruber J	2021-02-15	Nat Genet	Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.	Alzheimer's disease or family history of Alzheimer's disease	472,868 European ancestry individuals	NA	21q21.3	ADAMTS1	rs2830489-?	NR	3E-8		0.0589648	unit decrease	NR [10687077] (imputed)	N
799	chr21	28156855	28156856	rs2830500	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	21q21.3	ADAMTS1	rs2830500-C	0.692	3E-8		1.0752687	[1.04-1.1]	Affymetrix, Illumina [11480632] (imputed)	N
800	chr21	28181879	28181880	rs465401	31930058	Niu LD	2019-11-01	Ann Transl Med	Genome-wide association study of cerebrospinal fluid neurofilament light levels in non-demented elders.	Cerebrospinal fluid neurofilament light levels	263 European ancestry individuals	NA	21q21.3	ADAMTS1	rs465401-A	0.1385	2E-8		0.724	[0.4770-0.9709] unit increase	Illumina [441611]	N
800	chr21	28204423	28204424	rs229037	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs229037-?	NR	2E-6				Affymetrix [NR]	N
800	chr21	28209666	28209667	rs13615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q21.3		rs13615-?	NR	4E-8				NR [~ 8900000] (imputed)	N
800	chr21	28210367	28210368	rs149580995	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lung function (FVC)	371,898 European ancestry individuals	NA	21q21.3		rs149580995-?	NR	3E-8		0.070507	[0.045-0.096] unit decrease	NR [9800000] (imputed)	N
800	chr21	28223091	28223092	rs229100	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	21q21.3	Intergenic	rs229100-?	NR	5E-6		1.540832	[NR]	Affymetrix [492217] (imputed)	N
800	chr21	28223091	28223092	rs229100	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	21q21.3	ADAMTS1	rs229100-T	0.1827309	3E-12	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 5)	0.3664	[0.26-0.47] unit increase	Affymetrix [509946]	N
800	chr21	28278643	28278644	rs162531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q21.3		rs162531-?	NR	8E-11				NR [~ 8900000] (imputed)	N
800	chr21	28280321	28280322	rs151064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q21.3		rs151064-G	NR	1E-15		0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
800	chr21	28293799	28293800	rs2830581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q21.3		rs2830581-?	NR	5E-16				NR [~ 8900000] (imputed)	N
800	chr21	28305211	28305212	rs2830585	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	21q21.3	NR	rs2830585-T	0.160435	2E-8		0.0510702	[0.033-0.069] unit increase	Affymetrix [17914406] (imputed)	N
800	chr21	28305211	28305212	rs2830585	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q21.3	ADAMTS5	rs2830585-C	0.8728125	1E-249	(ADAMTS5, 3168_8_2)	1.0757439	[1.02-1.13] unit increase	Illumina [> 1000000] (imputed)	N
800	chr21	28305211	28305212	rs2830585	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	21q21.3	ADAMTS5, AP001601.2, MIR4759	rs2830585-T	0.1581325	4E-104	(A disintegrin and metalloproteinase with thrombospondin motifs 5)	1.073	[0.99-1.16] unit decrease	Affymetrix [509946]	N
800	chr21	28305476	28305477	rs2830586	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q21.3	ADAMTS5	rs2830586-G	0.165	2E-72	(A disintegrin and metalloproteinase with thrombospondin motifs 5, ADAMTS5.3168.8.2)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
801	chr21	28311571	28311572	rs151058	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q21.3	NR	rs151058-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
801	chr21	28322505	28322506	rs2249350	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q21.3	ADAMTS5	rs2249350-?	NR	2E-10		0.019054068	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
801	chr21	28322505	28322506	rs2249350	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q21.3	NR	rs2249350-A	0.11	2E-26	(A disintegrin and metalloproteinase with thrombospondin motifs 5, ADAMTS5.3168.8.2)	0.43	[0.35-0.51] unit increase	Affymetrix [10572788] (imputed)	N
801	chr21	28332225	28332226	rs72635025	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	21q21.3		rs72635025-A	0.99	2E-11				NR [NR] (imputed)	N
801	chr21	28332225	28332226	rs72635025	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (global cognition) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	21q21.3		rs72635025-A	0.99	2E-11				NR [NR] (imputed)	N
801	chr21	28332225	28332226	rs72635025	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (executive function) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	21q21.3		rs72635025-A	0.99	2E-11				NR [NR] (imputed)	N
801	chr21	28342204	28342205	rs233577	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q21.3	ADAMTS5	rs233577-T	NR	4E-8		0.0224062	[0.014-0.03] unit decrease	Affymetrix [321114] (imputed)	N
801	chr21	28346545	28346546	rs990529	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	21q21.3	intergenic	rs990529-G	0.3821464	2E-15	(EA, A disintegrin and metalloproteinase with thrombospondin motifs 5)	0.3289	[0.25-0.41] unit increase	Affymetrix [509946]	N
801	chr21	28386661	28386662	rs2830622	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs2830622-?	NR	7E-7				Affymetrix [NR]	N
801	chr21	28389925	28389926	rs148693816	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q21.3	NR	rs148693816-?	NR	9E-10		6.128	NR z score decrease	Illumina [at least 830937] (imputed)	N
801	chr21	28399000	28399001	rs77222011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q21.3		rs77222011-?	NR	3E-10				NR [~ 8900000] (imputed)	N
802	chr21	28550733	28550734	rs9980866	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.3	ADAMTS1	rs9980866-?	NR	6E-6	(adenosine monophosphate)	1.1689806	[0.66-1.68] unit increase	Affymetrix [at least 2500000] (imputed)	N
803	chr21	28614870	28614871	rs1477717	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q21.3	NR	rs1477717-?	NR	8E-6		3.958	NR unit increase	Affymetrix [at least 600000] (imputed)	N
803	chr21	28657339	28657340	rs2218930	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	21q21.3		rs2218930-C	NR	5E-6		4.5777507	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
803	chr21	28657339	28657340	rs2218930	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	21q21.3		rs2218930-C	NR	8E-6		4.4676147	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
803	chr21	28657948	28657949	rs457603	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	21q21.3	EIF4A1P1	rs457603-G	0.033	5E-6		0.07	[0.041-0.099] unit decrease	Illumina [747076]	N
803	chr21	28665346	28665347	rs2830840	19846067	Garriock HA	2009-10-19	Biol Psychiatry	A genomewide association study of citalopram response in major depressive disorder.	Response to citalopram treatment	Up to 659 European ancestry responders, up to 121 African American responders, up to 103 Hispanic responders, 408 European ancestry non-responders, 120 African American non-responders, 80 Hispanic non-responders	NA	21q21.3	EIF4A1P	rs2830840-?	0.46	5E-6	(remission)	1.47	[1.23-1.72]	Affymetrix [430198]	N
803	chr21	28667830	28667831	rs145844761	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	21q21.3	AP001604.3	rs145844761-A	0.0084	2E-6		0.7836	[0.46-1.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
803	chr21	28696475	28696476	rs239713	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal fluid AB1-42 levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	21q21.3	intergenic	rs239713-T	NR	5E-7	(AD)			Illumina [498205]	N
804	chr21	28734996	28734997	rs9977499	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	21q21.3	NCRNA00113, ADAMTS5	rs9977499-?	0.24	4E-6		1.57	[1.29-1.91]	Affymetrix [832357]	N
804	chr21	28744355	28744356	rs1452093	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	21q21.3	NCRNA00113, ADAMTS5	rs1452093-?	0.23	2E-6		1.59	[1.31-1.94]	Affymetrix [832357]	N
804	chr21	28773867	28773868	rs1452102	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q21.3	NR	rs1452102-T	0.5871	2E-9		0.0345	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
804	chr21	28774022	28774023	rs2830913	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q21.3	LINC00113	rs2830913-G	0.559778	1E-35		0.0234938	[0.02-0.027] unit decrease	NR [13737936] (imputed)	N
804	chr21	28774022	28774023	rs2830913	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q21.3		rs2830913-?	NR	1E-35				NR [~ 8900000] (imputed)	N
804	chr21	28774022	28774023	rs2830913	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q21.3		rs2830913-?	NR	1E-35		0.0263704	[0.022-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
804	chr21	28774868	28774869	rs239677	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q21.3		rs239677-?	NR	2E-29		0.0241672	[0.02-0.028] unit increase	Affymetrix [20259828] (imputed)	N
804	chr21	28774868	28774869	rs239677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q21.3	LINC00113	rs239677-C	0.590944	5E-9	(men)	0.0300636	[0.02-0.04] unit increase	NR [17166351] (imputed)	N
804	chr21	28774868	28774869	rs239677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q21.3	LINC00113	rs239677-C	0.58951	4E-15		0.0283171	[0.022-0.035] unit increase	NR [17166351] (imputed)	N
804	chr21	28774868	28774869	rs239677	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q21.3	LINC00113	rs239677-C	0.588259	2E-8	(women)	0.0270473	[0.018-0.036] unit increase	NR [17166351] (imputed)	N
804	chr21	28786044	28786045	rs62223500	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q21.3	NR	rs62223500-C	0.3614	3E-8	(European)	0.0351	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
804	chr21	28788342	28788343	rs9975725	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	21q21.3	NR	rs9975725-?	NR	8E-6				Illumina [1735619]	N
804	chr21	28801006	28801007	rs469709	29343252	Hendry LM	2018-01-17	BMC Med Genomics	Insights into the genetics of blood pressure in black South African individuals: the Birth to Twenty cohort.	Diastolic blood pressure	1,947 African ancestry individuals	NA	21q21.3	ADAMTS5, C21orf94	rs469709-A	0.05	9E-6		3.5	unit increase	Illumina [125906]	N
804	chr21	28804673	28804674	rs181146	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs181146-?	NR	2E-6				Affymetrix [NR]	N
804	chr21	28830254	28830255	rs147130662	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs147130662-C	0.998	4E-6	(AA)	0.227	unit increase	Illumina [NR] (imputed)	N
805	chr21	28842079	28842080	rs139916902	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs139916902-G	0.999	2E-7	(AA)	0.263	unit increase	Illumina [NR] (imputed)	N
805	chr21	28847770	28847771	rs2830965	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	ADAMTS5	rs2830965-T	0.830851	6E-9	(40 ms)	0.0430497	[0.028-0.058] unit increase	Affymetrix [10000000] (imputed)	N
805	chr21	28847770	28847771	rs2830965	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	ADAMTS5	rs2830965-T	0.830851	5E-8	(42 ms)	0.0407239	[0.026-0.055] unit increase	Affymetrix [10000000] (imputed)	N
805	chr21	28847770	28847771	rs2830965	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	ADAMTS5	rs2830965-T	0.830851	4E-9	(38 ms)	0.0429311	[0.028-0.057] unit increase	Affymetrix [10000000] (imputed)	N
805	chr21	28851579	28851580	rs13047360	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	21q21.3	BC043580	rs13047360-G	NR	5E-9				Affymetrix, Illumina [22000000] (imputed)	N
805	chr21	28860236	28860237	rs142181472	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs142181472-C	0.998	3E-7	(AA)	0.238	unit increase	Illumina [NR] (imputed)	N
805	chr21	28870625	28870626	rs956645	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	21q21.3	NCRNA00113	rs956645-T	0.0319	3E-6		0.9651	[0.56-1.37] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
805	chr21	28885690	28885691	rs142429672	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs142429672-C	0.999	1E-6	(AA)	0.274	unit increase	Illumina [NR] (imputed)	N
805	chr21	28885690	28885691	rs142429672	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs142429672-C	0.999	4E-6	(AA)	1.187	NR unit increase	Illumina [NR] (imputed)	N
805	chr21	28890131	28890132	rs242364	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	21q21.3	NCSTNP1, RPL10P1, EIF4A1P1, LINC00113	rs242364-C	NR	9E-6	(daytime napping duration, weekdays)	0.09077	[0.051-0.131] unit increase	Affymetrix [7141204] (imputed)	N
805	chr21	28890425	28890426	rs141838403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs141838403-C	0.999	9E-8	(AA)	0.282	unit increase	Illumina [NR] (imputed)	N
805	chr21	28890425	28890426	rs141838403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs141838403-C	0.999	3E-6	(AA)	1.249	NR unit increase	Illumina [NR] (imputed)	N
805	chr21	28917933	28917934	rs139202427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs139202427-A	0.999	1E-7	(AA)	0.301	unit increase	Illumina [NR] (imputed)	N
805	chr21	28917933	28917934	rs139202427	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs139202427-A	0.999	2E-6	(AA)	1.348	NR unit increase	Illumina [NR] (imputed)	N
805	chr21	28927120	28927121	rs142976294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs142976294-G	0.999	1E-7	(AA)	0.314	unit increase	Illumina [NR] (imputed)	N
805	chr21	28927120	28927121	rs142976294	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	21q21.3	Intergenic	rs142976294-G	0.999	2E-6	(AA)	1.415	NR unit increase	Illumina [NR] (imputed)	N
805	chr21	28946275	28946276	rs1598848	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytidine analogues (gemcitabine)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	21q21.3	intergenic	rs1598848-?		7E-7				Affymetrix, Illumina [1348798]	N
806	chr21	29025637	29025638	rs2831046	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	High-sensitivity cardiac troponin T levels	3,783 Japanese ancestry individuals	898 Japanese ancestry individuals	21q21.3	LINC00113	rs2831046-A	0.711	2E-6		0.021	[0.013-0.029] unit increase	Illumina [7151284] (imputed)	N
807	chr21	29123594	29123595	rs28882827	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin and anti-thyroid peroxidase levels (bivariate analysis)	up to 1,596 Croatian ancestry women, up to 1,033 Croatian ancestry men	NA	21q21.3	ADAMTS5	rs28882827-?	NR	4E-6	(women)	0.019	[0.011-0.027] unit increase	Illumina [5527232] (imputed)	N
807	chr21	29182772	29182773	rs614092	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	21q21.3	intergenic	rs614092-A	0.597444444444444	2E-6		0.03570385	[0.021-0.05] unit decrease	Illumina [1632371] (imputed)	N
808	chr21	29275626	29275627	rs9305339	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	21q21.3	LINC00314	rs9305339-?		8E-6		0.264	[NR] unit increase	Illumina [5970354] (imputed)	N
808	chr21	29352612	29352613	rs565845029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic renal failure	8,287 European ancestry cases, 474,571 European ancestry controls, 2,117 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	21q21.3		rs565845029-C	NR	2E-8		0.9088	[0.59-1.22] unit increase	Affymetrix, Illumina [25844740] (imputed)	N
809	chr21	29422423	29422424	rs58969369	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	21q21.3	NR	rs58969369-G	NR	8E-6		0.1362	[0.076-0.196] SD units increase	NR [10700000] (imputed)	N
809	chr21	29422505	29422506	rs3875283	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	21q21.3	LOC284825	rs3875283-G	0.49	1E-13		7.39	NR z score increase	Illumina [at least 900015] (imputed)	N
809	chr21	29471488	29471489	rs7281081	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	21q21.3	intergenic	rs7281081-?	NR	5E-6		1.2658228	[1.15-1.41]	Illumina [7436415] (imputed)	N
809	chr21	29475195	29475196	rs9305354	17903292	Hwang SJ	2007-09-19	BMC Med Genet	A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.	Urinary albumin excretion	822 individuals	NA	21q21.3	intergenic	rs9305354-?	NR	8E-6				Affymetrix [70897]	N
809	chr21	29484710	29484711	rs2205558	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	21q21.3	LINC01697	rs2205558-A	0.394577754482845	2E-6		0.0026438	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
810	chr21	29496569	29496570	rs4629237	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	21q21.3	LINC00314	rs4629237-?	NR	7E-10		0.0796	[0.054-0.105] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
810	chr21	29531285	29531286	rs2143683	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	21q21.3	intergenic	rs2143683-T	NR	4E-12		0.185	[0.13-0.24] unit increase	Affymetrix [7701190] (imputed)	N
810	chr21	29606307	29606308	rs149813805	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	21q21.3	Intergenic	rs149813805-?		6E-6		1.41	[1.21-1.63]	Illumina [7645193] (imputed)	N
811	chr21	29676669	29676670	rs138755414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	21q21.3	Intergenic	rs138755414-T	0.018	4E-6		0.052	NR unit increase	Illumina [NR] (imputed)	N
811	chr21	29691221	29691222	rs9975325	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	21q21.3	Intergenic	rs9975325-A	0.023	4E-6		0.049	NR unit increase	Illumina [NR] (imputed)	N
811	chr21	29706561	29706561	rs138716730	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		21q21.3	intergenic	rs138716730-GT	0.0512019	8E-6		0.839047	[0.48-1.2] unit decrease	Illumina [640625] (imputed)	N
812	chr21	29754993	29754994	rs71668025	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	21q21.3		rs71668025-A	NR	3E-6		1.0554	[1.03-1.08]	Illumina [11600722] (imputed)	N
812	chr21	29766795	29766796	rs2831758	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs2831758-?	NR	8E-16				Affymetrix [NR]	N
812	chr21	29773001	29773002	rs540968291	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	21q21.3		rs540968291-T	0.026	4E-6		0.109	[0.062-0.156] unit increase	Illumina [6361597] (imputed)	N
812	chr21	29835260	29835261	rs17699341	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	21q21.3		rs17699341-?	NR	3E-11				Illumina [1128286]	N
813	chr21	29991551	29991552	rs149173751	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	21q21.3	Intergenic	rs149173751-?		2E-6		1.53	[1.28-1.81]	Illumina [7645193] (imputed)	N
814	chr21	30035591	30035592	rs56923832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q21.3		rs56923832-?	NR	6E-9				NR [~ 8900000] (imputed)	N
814	chr21	30074423	30074424	rs2409317	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	21q21.3	Intergenic	rs2409317-T	NR	4E-7	(between families)	5.088	unit decrease	Affymetrix [up to 15107142] (imputed)	N
814	chr21	30099346	30099347	rs8129833	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q21.3	ZNF294	rs8129833-?	NR	6E-7	(CE 18:1)	0.33724087	[0.2-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
814	chr21	30102617	30102618	rs7276463	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q21.3	N6AMT1	rs7276463-G	0.754271	2E-19		0.0054305	[0.0043-0.0066] unit decrease	Affymetrix [13995440] (imputed)	N
814	chr21	30109997	30109998	rs2832008	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	21q21.3	NR	rs2832008-?	0.14	4E-6		1.1494253	[1.09-1.23]	Illumina [~ 1113287] (imputed)	N
814	chr21	30121460	30121461	rs397867205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	21q21.3		rs397867205-G	NR	4E-24		0.0264	[0.021-0.031] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
814	chr21	30123532	30123533	rs57448815	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q21.3	LINC00161, N6AMT1	rs57448815-A		6E-9		0.227	unit decrease	Affymetrix [at least 2696785] (imputed)	N
814	chr21	30125907	30125908	rs59884963	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q21.3	N6AMT1	rs59884963-T	0.1864	4E-16		0.2646	[0.2-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
814	chr21	30126481	30126482	rs73186036	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	21q21.3	LINC00161, N6AMT1	rs73186036-?	NR	8E-11		0.02989	[0.021-0.039] unit increase	Illumina [6108953] (imputed)	N
814	chr21	30131871	30131872	rs11909120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	21q21.3		rs11909120-T	NR	1E-14		0.0193	[0.014-0.024] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
814	chr21	30133310	30133311	rs2832059	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	21q21.3	LINC00161, N6AMT1	rs2832059-?		2E-9		0.0274	[0.019-0.036] unit increase	Illumina [31500000] (imputed)	N
814	chr21	30141020	30141021	rs2832077	17903297	Seshadri S	2007-09-19	BMC Med Genet	Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham Study.	Cognitive test performance	694 European ancestry individuals	NA	21q21.3	intergenic	rs2832077-?	NR	2E-6	(F3)			Affymetrix [70897]	N
815	chr21	30154238	30154239	rs11700980	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	21q21.3	NR	rs11700980-?	NR	2E-8	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
815	chr21	30169763	30169763	rs61635972	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	21q21.3	NR	rs61635972-?	NR	6E-6		0.7849	[0.48-1.09] unit increase	Illumina [at least 560000] (imputed)	N
815	chr21	30237129	30237130	rs2705683	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	21q21.3		rs2705683-A	0.114151	3E-8		0.0351454	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
815	chr21	30257559	30257560	rs1997606	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	21q21.3	N6AMT1	rs1997606-C	NR	1E-6				Illumina [up to 3803121] (imputed)	N
816	chr21	30313060	30313061	rs2243503	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	21q21.3		rs2243503-T	0.299108	2E-10		0.0235133	[0.016-0.031] unit increase	Illumina [13478866] (imputed)	N
816	chr21	30315680	30315681	rs2705666	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	21q21.3	LTN1	rs2705666-A	0.1284	9E-7		0.0653	[0.039-0.091] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
816	chr21	30323433	30323434	rs11298146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q21.3		rs11298146-T	NR	5E-13		0.011	[0.0081-0.0139] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
816	chr21	30331934	30331935	rs57646126	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	21q21.3	LTN1	rs57646126-?	NR	8E-8	(African)			Illumina [4404269] (imputed)	N
816	chr21	30339119	30339120	rs34191159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	21q21.3	LTN1	rs34191159-A	0.150617	2E-27		0.034110095	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr21	30339119	30339120	rs34191159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	21q21.3	LTN1	rs34191159-A	0.150627	4E-25		0.032520443	[0.026-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr21	30339119	30339120	rs34191159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	21q21.3	LTN1	rs34191159-A	0.150628	8E-19		0.027834127	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr21	30339119	30339120	rs34191159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	21q21.3	LTN1	rs34191159-A	0.15062	3E-33		0.03754514	[0.031-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr21	30339119	30339120	rs34191159	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	21q21.3	LTN1	rs34191159-A	0.150639	3E-31		0.036388822	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr21	30371072	30371073	rs4496396	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q21.3	RWDD2B	rs4496396-T	0.107503	1E-18		0.00748057	[0.0058-0.0091] unit decrease	Affymetrix [13995440] (imputed)	N
816	chr21	30393663	30393664	rs6516886	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the hip or knee (hospital diagnosed)	6,586 European ancestry cases, 26,384 European ancestry controls	9,429 Icelandic ancestry cases, 199.421 Icelandic ancestry controls	21q21.3	NR	rs6516886-T	0.747959	1E-7		1.0904	[1.0559-1.126]	Affymetrix [16396089] (imputed)	N
816	chr21	30399298	30399299	rs1034123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q21.3	NR	rs1034123-A	NR	3E-15		0.0306	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
816	chr21	30399298	30399299	rs1034123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	21q21.3	NR	rs1034123-A	NR	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
816	chr21	30399298	30399299	rs1034123	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	21q21.3	NR	rs1034123-A	NR	2E-12		0.0274	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
817	chr21	30453644	30453645	rs9977696	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	21q21.3		rs9977696-C	NR	3E-8		0.0112	[0.0073-0.0151] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
817	chr21	30455628	30455628	rs762834393	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	CCT8, MAP3K7CL	rs762834393-TCCC	0.299376	7E-9	(84 ms)	0.036273	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
817	chr21	30455628	30455628	rs762834393	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	CCT8, MAP3K7CL	rs762834393-TCCC	0.299376	2E-8	(116 ms)	0.0348205	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
817	chr21	30455628	30455628	rs762834393	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	CCT8, MAP3K7CL	rs762834393-TCCC	0.299376	1E-8	(114 ms)	0.0345041	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
817	chr21	30465585	30465586	rs2832171	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	21q21.3		rs2832171-T	NR	1E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
817	chr21	30489299	30489300	rs2832191	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	21q21.3	C21orf7	rs2832191-?	NR	5E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
817	chr21	30492836	30492837	rs68046920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q21.3	MAP3K7CL	rs68046920-G	0.235509	3E-10		0.016464813	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
817	chr21	30500590	30500591	rs3838080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	21q21.3		rs3838080-C	0.188168	2E-8		0.0146792	[0.0096-0.0198] unit increase	Illumina [13479295] (imputed)	N
817	chr21	30513853	30513854	rs11330686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	21q21.3		rs11330686-A	0.215648	1E-11		0.0297709	[0.021-0.038] unit increase	Illumina [13476165] (imputed)	N
817	chr21	30520577	30520578	rs73192202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q21.3		rs73192202-?	NR	3E-13				NR [~ 8900000] (imputed)	N
817	chr21	30524292	30524293	rs3787662	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy	2,468 European ancestry cases, 21,204 European ancestry controls, 481 African ancestry cases, 8,793 African ancestry controls, 168 Hispanic/Latino ancestry cases, 11,017 Hispanic/Latino ancestry controls	NA	21q21.3	MAP3K7CL	rs3787662-A	NR	2E-6		1.24	[1.13-1.35]	Affymetrix, Illumina [NR] (imputed)	N
817	chr21	30530691	30530692	rs2251381	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	21q21.3	BACH1	rs2251381-G		5E-6		1.21	[NR]	Illumina [up to 9464381] (imputed)	N
817	chr21	30533075	30533076	rs2832227	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	21q21.3	MAP3K7CL	rs2832227-A	0.8258	4E-9		0.0393	[0.026-0.052] unit decrease	Affymetrix [at least 7947838] (imputed)	N
817	chr21	30533075	30533076	rs2832227	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	21q21.3	MAP3K7CL	rs2832227-A	0.8248	2E-9		0.0438	[0.029-0.058] unit decrease	NR [8041861] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	9E-31	(80 ms)	0.0841397	[0.07-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	7E-32	(82 ms)	0.0864905	[0.072-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	6E-48	(94 ms)	0.106117	[0.092-0.121] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	5E-31	(156 ms)	0.0841535	[0.07-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	5E-28	(70 ms)	0.0812417	[0.067-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	4E-45	(92 ms)	0.102894	[0.088-0.117] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	3E-37	(88 ms)	0.0936657	[0.079-0.108] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	3E-33	(76 ms)	0.0890734	[0.075-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	3E-31	(72 ms)	0.0861169	[0.072-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	3E-19	(56 ms)	0.066444	[0.052-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-39	(90 ms)	0.0973311	[0.083-0.112] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-22	(60 ms)	0.0722495	[0.058-0.087] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-21	(58 ms)	0.0703814	[0.056-0.085] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-17	(54 ms)	0.0629669	[0.048-0.078] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-16	(184 ms)	0.058844	[0.044-0.073] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-14	(52 ms)	0.0569311	[0.042-0.071] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	2E-11	(50 ms)	0.0496481	[0.035-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	1E-8	(48 ms)	0.042286	[0.028-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	1E-33	(84 ms)	0.0893152	[0.075-0.104] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30534127	30534128	rs1999323	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q21.3	MAP3K7CL	rs1999323-C	0.826917	1E-25	(68 ms)	0.0784161	[0.064-0.093] unit decrease	Affymetrix [10000000] (imputed)	N
817	chr21	30535086	30535087	rs2832229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	21q21.3		rs2832229-G	NR	5E-18		0.0215	[0.017-0.026] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
817	chr21	30535301	30535302	rs73193808	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	21q21.3	MAP3K7CL	rs73193808-A	0.169	5E-9		0.049	[0.033-0.065] unit increase	Affymetrix [7947838] (imputed)	N
818	chr21	30540258	30540259	rs2471950	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	21q21.3	MAP3K7CL	rs2471950-A	NR	8E-7				Illumina [up to 3803121] (imputed)	N
818	chr21	30540558	30540559	rs2832232	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	21q21.3	MAP3K7CL	rs2832232-?	NR	1E-10		0.0439207	[0.031-0.057] unit increase	Illumina [4804024] (imputed)	N
818	chr21	30555153	30555154	rs10460702	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	21q21.3	MAP3K7CL, LINC00189	rs10460702-?		1E-9		0.0336	[0.023-0.044] unit decrease	Illumina [31500000] (imputed)	N
818	chr21	30555153	30555154	rs10460702	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	21q21.3	MAP3K7CL, LINC00189	rs10460702-?	NR	1E-10		0.03351	[0.023-0.044] unit increase novel	Illumina [6108953] (imputed)	N
818	chr21	30567284	30567285	rs73354869	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	21q21.3	LINC00189	rs73354869-C	0.17031	8E-8		1.05	[1.03-1.07]	NR [8126035] (imputed)	N
818	chr21	30582682	30582683	rs1882862	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	21q21.3	LINC00189	rs1882862-C	0.119896	6E-12		0.00420236	[0.003-0.0054] unit decrease	Affymetrix [13995440] (imputed)	N
818	chr21	30594531	30594532	rs2832270	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	21q21.3	C21orf7	rs2832270-?	NR	8E-6		0.28	[NR] unit increase	Affymetrix, Illumina [1348798]	N
818	chr21	30600188	30600189	rs2832274	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	21q21.3		rs2832274-A	0.6005	1E-14		0.58	[0.44-0.72] unit decrease	Affymetrix [9800000]	N
818	chr21	30600188	30600189	rs2832274	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	21q21.3		rs2832274-A	0.6	5E-6		0.027	[0.015-0.039] unit decrease	Affymetrix [NR]	N
818	chr21	30608884	30608885	rs2832277	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	21q21.3	MAP3K7CL, BACH1	rs2832277-G	0.88	1E-16		8.27	z-score increase	Affymetrix [4312306] (imputed)	N
818	chr21	30613465	30613466	rs2832279	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	21q21.3	BACH1	rs2832279-?	0.3528	4E-11		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
818	chr21	30613768	30613769	rs1011668	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q21.3	LINC00189	rs1011668-A	0.114807	3E-15		0.00630757	[0.0047-0.0079] unit decrease	Affymetrix [13995440] (imputed)	N
818	chr21	30638284	30638285	rs4817279	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	21q21.3		rs4817279-C	NR	5E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
819	chr21	30678071	30678072	rs1153280	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	21q21.3	BACH1	rs1153280-?	NR	2E-22		0.04058	[0.032-0.049] unit increase novel	Illumina [6108953] (imputed)	N
819	chr21	30690557	30690558	rs2832283	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q21.3	NA	rs2832283-A	0.2254	5E-9		0.0115	[0.0076-0.0154] unit increase	NR [~ 27400000] (imputed)	N
819	chr21	30691324	30691325	rs1153293	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q21.3	NR	rs1153293-C	0.620227	4E-10		0.01193	[0.0082-0.0157] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
819	chr21	30713597	30713598	rs17744121	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	21q21.3	BACH1	rs17744121-G	0.07	6E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
819	chr21	30717736	30717737	rs372883	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	21q21.3	BACH1	rs372883-T	NR	2E-13		1.27	[1.19-1.33]	Affymetrix [666141]	N
819	chr21	30721381	30721382	rs412662	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	21q21.3	BACH1	rs412662-C	0.48	8E-11		6.5	z-score increase	Affymetrix [4314223] (imputed)	N
819	chr21	30722439	30722440	rs407463	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q21.3		rs407463-A	NR	6E-10		0.01	[0.0069-0.0131] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
819	chr21	30726772	30726773	rs2027605	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q21.3		rs2027605-?	NR	2E-8				NR [~ 8900000] (imputed)	N
819	chr21	30740393	30740394	rs13048365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	21q21.3		rs13048365-C	NR	5E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
819	chr21	30745095	30745095	rs35884496	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.3	NR	rs35884496-T	0.02613	2E-9	(PRDX3)	1.044	NR unit increase	Illumina [1671387] (imputed)	N
820	chr21	30910627	30910628	rs117123217	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q21.3	GRIK1	rs117123217-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
820	chr21	30915961	30915962	rs2154490	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	21q21.3	GRIK1	rs2154490-A	0.222	1E-6				Affymetrix, Illumina [NR] (imputed)	N
820	chr21	30928731	30928732	rs9680365	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	21q21.3	GRIK1	rs9680365-A	0.04	9E-9		5.751	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
821	chr21	30952665	30952666	rs2832402	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs2832402-?	NR	1E-10				Affymetrix [NR]	N
821	chr21	30961130	30961131	rs363433	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Lung cancer	237 European ancestry female cases, 220 European ancestry male cases, 8,354 European ancestry female controls, 6,278 European ancestry male controls	NA	21q21.3	GRIK1	rs363433-C	0.863	1E-6	(Male)	0.539	[0.42-0.66]	NR [up to 1668434] (imputed)	N
821	chr21	30986447	30986448	rs363444	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Forehead morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	21q21.3	GRIK1	rs363444-A	0.19	1E-6	(Upper forehead slant depth)	0.05	[NR] unit increase	Affymetrix [311944]	N
821	chr21	31013158	31013159	rs363598	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	21q21.3	GRIK1	rs363598-C	NR	5E-6	(5 degree of freedom test)	1.006	[0.98-1.03]	NR [1252901] (imputed)	N
821	chr21	31050816	31050817	rs363512	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	21q21.3	GRIK1	rs363512-?	NR	4E-6	(binary)			Perlegen [429981]	N
822	chr21	31100796	31100797	rs933117	22446040	Wang KS	2012-03-16	Gene	A novel locus for body mass index on 5p15.2: a meta-analysis of two genome-wide association studies.	Body mass index	5,218 European ancestry individuals	762 European ancestry individuals	21q21.3	GRIK1	rs933117-A	0.08	6E-6		0.8491	[NR] unit decrease	Illumina [up to 520531]	N
822	chr21	31146168	31146169	rs455804	22807686	Li S	2012-07-12	PLoS Genet	GWAS identifies novel susceptibility loci on 6p21.32 and 21q21.3 for hepatocellular carcinoma in chronic hepatitis B virus carriers.	Hepatocellular carcinoma	1,538 Han Chinese ancestry HBV-positive HCC cases, 1,465 Han Chinese ancestry chronic HBV carriers	4,431 Han Chinese ancestry HBV-positive HCC cases, 4,725 Han Chinese ancestry chronic HBV carriers	21q21.3	GRIK1	rs455804-C	0.66	5E-10		1.19	[1.12-1.25]	NR [523663]	N
822	chr21	31177510	31177511	rs458685	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Breast cancer	58 cases, 665 controls	NA	21q21.3	GRIK1	rs458685-?	NR	6E-6				Affymetrix [70897]	N
823	chr21	31196772	31196773	rs9983495	31806883	de Las Fuentes L	2019-12-06	Pharmacogenomics J	Genome-wide meta-analysis of variant-by-diuretic interactions as modulators of lipid traits in persons of European and African ancestry.	HDL cholesterol levels x thiazide or thiazide-like diuretics use interaction	6,878 European ancestry exposed individuals, 30,715 European ancestry unexposed individuals, 3,923 African American and African ancestry exposed individuals, 5,218 African American and African ancestry unexposed individuals	NA	21q21.3	GRIK1	rs9983495-?	NR	3E-7		0.0409	[0.023-0.059] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
823	chr21	31200502	31200503	rs408302	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	21q21.3	GRIK1	rs408302-?	NR	9E-6		0.109	[0.04-0.178] unit increase	Illumina [at least 13000000] (imputed)	N
823	chr21	31225710	31225711	rs117155764	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q21.3	NR	rs117155764-G	0.0122	2E-9	(S100A6)	0.1381	NR unit decrease	Illumina [1671387] (imputed)	N
823	chr21	31243023	31243024	rs2832464	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q21.3	NR	rs2832464-?	NR	6E-6				Affymetrix [NR]	N
823	chr21	31244477	31244478	rs457352	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	21q21.3	GRIK1	rs457352-T	0.13	7E-6	(Age 20-60 years)	0.2401	[0.14-0.34] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
823	chr21	31302104	31302105	rs141278763	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	21q21.3	NR	rs141278763-G	0.01	3E-6		1.8	[1.55-2.05]	Illumina [8468885] (imputed)	N
824	chr21	31327757	31327758	rs7278389	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	21q21.3		rs7278389-?	NR	1E-5		0.18	[0.1-0.26] unit increase	Affymetrix, Illumina [NR] (imputed)	N
824	chr21	31351430	31351431	rs455636	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	21q21.3	NR	rs455636-C	0.9487522	7E-6		1.066098	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
824	chr21	31352219	31352220	rs455425	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	21q21.3	CLDN17	rs455425-A	0.1176	5E-8		0.020042589	[0.013-0.027] unit decrease	Affymetrix [11515109] (imputed)	N
824	chr21	31373816	31373817	rs2832521	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	21q21.3	NR	rs2832521-?	NR	8E-6		1713.846	NR unit increase	Illumina [2379855]	N
824	chr21	31386242	31386243	rs9305406	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	21q21.3	CLDN17, CLDN8, GRIK1	rs9305406-G	0.2	8E-6	(Triglyceride, sum)			Illumina [~ 2500000] (imputed)	N
825	chr21	31460228	31460229	rs8130309	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q21.3		rs8130309-C	0.699	9E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
825	chr21	31466421	31466422	rs2832596	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q21.3	NR	rs2832596-?		5E-6				Illumina [4322238] (imputed)	N
825	chr21	31482568	31482569	rs478474	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q21.3	NR	rs478474-C	0.312	3E-8		0.00647789	[0.0042-0.0088] unit decrease	NR [9732723] (imputed)	N
825	chr21	31519306	31519307	rs7283054	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	21q21.3	CLDN17	rs7283054-C	0.02	1E-6	(cohort study)	2.69	[1.81-4.00]	Affymetrix, Illumina [up to 2600000] (imputed)	N
825	chr21	31519306	31519307	rs7283054	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	21q21.3	CLDN17	rs7283054-C	0.02	1E-6		0.99	[0.6-1.38] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
825	chr21	31520759	31520760	rs633074	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q21.3		rs633074-?	NR	5E-8				NR [NR]	N
825	chr21	31540422	31540423	rs2832645	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q21.3		rs2832645-?	NR	2E-8				NR [NR]	N
825	chr21	31540422	31540423	rs2832645	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q21.3		rs2832645-?	NR	4E-8				NR [NR]	N
825	chr21	31587792	31587793	rs686364	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	21q22.11		rs686364-G	NR	3E-17		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
825	chr21	31587792	31587793	rs686364	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	21q22.11	NR	rs686364-A	0.77	1E-17		0.0184	[0.014-0.023] unit decrease	NR [NR]	N
827	chr21	31782601	31782602	rs2898168	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment, 914 European ancestry non-responders to first treatment	NA	21q22.11	KRTAP13-1	rs2898168-?	0.68	2E-6		1.6666665		Affymetrix, Illumina [7000000] (imputed)	N
828	chr21	31871306	31871307	rs2065281	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Progression-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	21q22.11		rs2065281-A	NR	2E-6		1.39	[1.21-1.59]	Illumina [7582931] (imputed)	N
829	chr21	32060489	32060490	rs13046373	23726366	Coram MA	2013-05-29	Am J Hum Genet	Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.	HDL cholesterol	7,917 African American individuals, 3,506 Hispanic individuals	7,138 African American individuals	21q22.11	intergenic	rs13046373-C	0.391	4E-6	(AA)	0.0226	[NR] unit decrease	Affymetrix [NR]	N
829	chr21	32077408	32077409	rs182231248	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	21q22.11	KRTAP21-3	rs182231248-G	NR	7E-6		0.18139608	[0.086-0.277] unit increase	Illumina [> 6200000] (imputed)	N
830	chr21	32183995	32183996	rs2833098	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	21q22.11	GRIK1	rs2833098-G	0.38	2E-8		5.64	NR unit decrease	Affymetrix, Illumina [~ 5000000] (imputed)	N
830	chr21	32190710	32190711	rs34767221	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	21q22.11	KRTAP8-1	rs34767221-T	0.0893034328229521	9E-6	(G_unclassified_P_Firmicutes_HB)	0.56033	[0.31-0.81] unit decrease	Illumina [7711310] (imputed)	N
830	chr21	32200201	32200202	rs34613612	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	21q22.11	KRTAP8-1	rs34613612-C	NR	6E-10	(Actinobacteria phylum)	0.25	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
830	chr21	32200201	32200202	rs34613612	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	21q22.11	KRTAP8-1	rs34613612-C	NR	6E-10	(Actinobacteria class)	0.25	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
830	chr21	32216252	32216253	rs7283316	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	21q22.11	KRTARP7-1	rs7283316-A	0.38	9E-6	(digit symbol)	0.37	[0.21-0.53] unit decrease	Illumina [~ 610000]	N
830	chr21	32223482	32223483	rs2409392	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	21q22.11	NR	rs2409392-A	0.409	5E-6	(Males)	0.245129	[0.14-0.35] unit increase	Illumina [~ 6600000] (imputed)	N
830	chr21	32236469	32236470	rs35108539	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	21q22.11	NR	rs35108539-T	NR	7E-6	(GEE model)	0.40059	[0.23-0.58] unit increase	NR [NR] (imputed)	N
831	chr21	32250707	32250708	rs146035278	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	21q22.11	KRTAP11-1	rs146035278-T	0.9913	1E-6		0.202	[0.12-0.28] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
831	chr21	32304265	32304266	rs8134605	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q22.11	NR	rs8134605-?	NR	8E-7				Affymetrix [5486770] (imputed)	N
832	chr21	32401129	32401130	rs28456019	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	21q22.11	NR	rs28456019-?	NR	1E-6		0.1685	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
832	chr21	32407115	32407116	rs2833197	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	21q22.11	intergenic	rs2833197-?		9E-6				NR [~ 3000000] (imputed)	N
832	chr21	32440539	32440540	rs1475591	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	21q22.11	intergenic	rs1475591-T	0.42	6E-6		1.18	[1.10-1.27]	Affymetrix [~ 2740000] (imputed)	N
833	chr21	32506283	32506284	rs61550741	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	21q22.11	NR	rs61550741-G	NR	1E-6	(phenotype 2)	2.27	[NR]	Illumina [> 8000000] (imputed)	N
833	chr21	32541564	32541565	rs141232978	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	21q22.11	TIAM1	rs141232978-T	0.0325	8E-6		0.0967	[0.054-0.139] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
833	chr21	32541564	32541565	rs141232978	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	21q22.11	TIAM1	rs141232978-T	0.0325	8E-6		0.0967	[0.054-0.139] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
833	chr21	32627825	32627826	rs2833351	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	21q22.11	TIAM1	rs2833351-C	NR	9E-6		0.122	[0.067-0.177] unit increase	Illumina [NR] (imputed)	N
833	chr21	32627991	32627992	rs2253204	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	21q22.11	NR	rs2253204-?	NR	2E-8				Illumina [7760689] (imputed)	N
834	chr21	32720123	32720124	rs845930	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	21q22.11		rs845930-?	NR	8E-6	(overall)	1.18		Illumina [11595112] (imputed)	N
835	chr21	32776106	32776107	rs7275394	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	21q22.11	NR	rs7275394-A	0.0231	8E-11		0.2892	[0.2-0.38] unit increase	Illumina [~ 10600000] (imputed)	N
835	chr21	32810898	32810899	rs558059	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	21q22.11	NR	rs558059-?	NR	5E-13		7.225	NR z score decrease	Illumina [at least 830937] (imputed)	N
835	chr21	32817506	32817507	rs580140	22044751	Foster MC	2011-11-01	BMC Med Genet	Heritability and genome-wide association analysis of renal sinus fat accumulation in the Framingham Heart Study.	Renal sinus fat	2,809 European ancestry individuals	NA	21q22.11	TIAM1	rs580140-G	0.28	3E-6		0.184	[0.11-0.26] unit decrease	Affymetrix [~ 2500000] (imputed)	N
835	chr21	32884847	32884848	rs73199525	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	21q22.11	NR	rs73199525-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
836	chr21	32918293	32918294	rs13048019	20801718	Laaksovirta H	2010-08-27	Lancet Neurol	Chromosome 9p21 in amyotrophic lateral sclerosis in Finland: a genome-wide association study.	Amyotrophic lateral sclerosis	405 European ancestry cases, 497 European ancestry controls	NA	21q22.11	SOD1	rs13048019-T	0.17	3E-8		2.02	[1.61-2.53]	Illumina [318167]	N
836	chr21	32933023	32933024	rs2070419	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 12 weeks)	98 European ancestry cases and controls	NA	21q22.11	intergenic	rs2070419-A	0.47	5E-6	(CGI)	6.09		Illumina [266820] (imputed)	N
836	chr21	32934381	32934382	rs4817405	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	21q22.11	NR	rs4817405-?		2E-6		1.6129031	[1.33-1.96]	Illumina [NR]	N
836	chr21	32961255	32961256	rs35833676	33225922	Adebamowo SN	2020-11-23	BMC Med Genet	Genome-wide association study of prevalent and persistent cervical high-risk human papillomavirus (HPV) infection.	Cervical high-risk human papilloma virus infection	125 Nigerian ancestry cases, 392 Nigerian ancestry controls	NA	21q22.11	TIAM1	rs35833676-?	NR	2E-6		3.45	2.07-5.73	Illumina [~ 18000000] (imputed)	N
836	chr21	32973435	32973436	rs181030347	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	21q22.11		rs181030347-A	0.011571	6E-6		0.1422	[0.081-0.204] unit decrease	Affymetrix [15580782] (imputed)	N
836	chr21	32984186	32984187	rs12627601	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q22.11	NR	rs12627601-A	0.305	3E-8		0.00650606	[0.0042-0.0088] unit decrease	NR [9732723] (imputed)	N
837	chr21	33038864	33038865	rs2234694	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	21q22.11	NR	rs2234694-A	0.955743	9E-9		0.0138316	[0.0083-0.0194] unit increase	Affymetrix [16582621] (imputed)	N
837	chr21	33038864	33038865	rs2234694	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	21q22.11	NR	rs2234694-A	0.955743	7E-7		0.0129971	[0.0071-0.0189] unit increase	Affymetrix [16582614] (imputed)	N
837	chr21	33039602	33039603	rs80265967	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	21q22.11		rs80265967-C	0.006	4E-18		1.078	[0.83-1.32] unit increase	Illumina [10461755] (imputed)	N
837	chr21	33044407	33044408	rs73201506	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	21q22.11		rs73201506-A	0.953989	8E-9		0.0565942	[0.037-0.076] unit decrease	NR [11722792] (imputed)	N
837	chr21	33059830	33059831	rs17660708	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.11	SCAF4	rs17660708-T	0.9612	1E-10		0.036	[0.025-0.047] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
837	chr21	33059830	33059831	rs17660708	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	21q22.11	NR	rs17660708-T	NR	9E-7		0.037	unit decrease	Affymetrix [at least 7091467] (imputed)	N
837	chr21	33059830	33059831	rs17660708	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	21q22.11	NR	rs17660708-T	NR	2E-9		0.044	unit decrease	Affymetrix [at least 7091467] (imputed)	N
837	chr21	33066422	33066423	rs73201521	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	21q22.11	NR	rs73201521-A	0.953532	2E-9		0.0292495	[0.02-0.039] unit decrease	NR [NR]	N
837	chr21	33068961	33068962	rs7280330	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.11		rs7280330-?	NR	9E-10				NR [~ 8900000] (imputed)	N
837	chr21	33069920	33069921	rs190508378	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	21q22.11	SCAF4	rs190508378-C	0.011	4E-7	(Other antiinflammatory and antirheumatic agents, non-steroids [M01AX])	4.85		Illumina [16500000] (imputed)	N
837	chr21	33072362	33072363	rs59300999	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs59300999-T	0.9325	5E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
837	chr21	33075403	33075404	rs2833483	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.11	Intergenic	rs2833483-T	0.9314	7E-9	(MTAG)	0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
837	chr21	33085584	33085585	rs1544	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs1544-A	0.2636	2E-9		0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
837	chr21	33095958	33095959	rs112078975	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	21q22.11	NR	rs112078975-G	0.951208	8E-11		0.0119701	[0.0081-0.0159] unit increase	Affymetrix [16582909] (imputed)	N
837	chr21	33095958	33095959	rs112078975	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	21q22.11	NR	rs112078975-G	0.951208	3E-7		0.0101795	[0.0058-0.0145] unit increase	Affymetrix [16582965] (imputed)	N
837	chr21	33096102	33096103	rs67038483	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	21q22.11	NR	rs67038483-C	0.955007	7E-6		0.0227153	[0.013-0.033] unit decrease	Affymetrix [NR] (imputed)	N
837	chr21	33096102	33096103	rs67038483	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	21q22.11	SCAF4	rs67038483-C	0.955007	4E-8		0.0275587	[0.018-0.037] unit decrease	Affymetrix [NR] (imputed)	N
837	chr21	33096864	33096865	rs73201540	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	21q22.11	NR	rs73201540-T	NR	1E-9		0.0356	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
837	chr21	33105764	33105765	rs73201545	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	21q22.11	NR	rs73201545-G	0.955521	8E-13		0.0333784	[0.024-0.043] unit decrease	Affymetrix [15000001]	N
837	chr21	33118871	33118872	rs73201559	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	21q22.11	NR	rs73201559-T	NR	1E-9		0.0359	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
837	chr21	33144030	33144031	rs11088189	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q22.11		rs11088189-G	0.245	7E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
838	chr21	33179370	33179371	rs2833522	26077402	de Rooy DP	2015-06-15	J Rheumatol	Genetic Factors for the Severity of ACPA-negative Rheumatoid Arthritis in 2 Cohorts of Early Disease: A Genome-wide Study.	Joint damage progression in ACPA-negative rheumatoid arthritis	262 Western European ancestry cases	253 Western European ancestry cases	21q22.11	HUNK, SCAF4, AP000255.6-001	rs2833522-A		4E-9				Illumina [244624]	N
838	chr21	33214049	33214050	rs77292666	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	21q22.11	NR	rs77292666-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
838	chr21	33245334	33245335	rs57981699	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.11	NR	rs57981699-G	0.01045	4E-9	(SDHB)	0.2035	NR unit increase	Illumina [1671387] (imputed)	N
838	chr21	33285299	33285300	rs2833556	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	21q22.11	HUNK	rs2833556-?	0.31	5E-7	(olanzapine)			Affymetrix [492900]	N
838	chr21	33287872	33287873	rs2833560	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	21q22.11	NR	rs2833560-?	NR	2E-6		0.1009	[0.059-0.142] unit increase	Illumina [at least 560000] (imputed)	N
839	chr21	33296112	33296113	rs11910494	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.11	NR	rs11910494-G	0.288747077060134	8E-6	(IGP49)	0.1483	[0.083-0.213] unit increase	Illumina [~ 2500000] (imputed)	N
839	chr21	33326780	33326781	rs2833577	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	21q22.11	HUNK	rs2833577-?	NR	1E-6		1.07	[1.04-1.11]	NR [7424691] (imputed)	N
839	chr21	33328528	33328529	rs2833579	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	21q22.11		rs2833579-G		3E-6		1.15	[1.08-1.21]	Affymetrix, Illumina [1722107] (imputed)	N
839	chr21	33381039	33381040	rs2833607	19890347	Birlea SA	2009-11-05	J Invest Dermatol	Genome-wide association study of generalized vitiligo in an isolated European founder population identifies SMOC2, in close proximity to IDDM8.	Vitiligo	32 Romanian founder cases, 44 European ancestry controls	NA	21q22.11	HUNK	rs2833607-?	0.26	2E-6				Illumina [297342]	N
839	chr21	33385185	33385186	rs2833610	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	21q22.11	HUNK	rs2833610-A	0.57	4E-6	(Chinese+Malay+Indian)	1.17	[1.09-1.24]	Illumina [~ 2000000] (imputed)	N
840	chr21	33552511	33552512	rs2833693	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	21q22.11	C21orf45	rs2833693-T	0.723	4E-6	(Reward dependence)	0.17	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
841	chr21	33595086	33595086	rs777058947	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell size variation coefficient	6,125 Icelandic ancestry individuals	NA	21q22.11	NR	rs777058947-CA		6E-7		0.674	[NR] unit decrease	Illumina [NR]	N
841	chr21	33669541	33669542	rs10427546	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	21q22.11	NR	rs10427546-?		3E-7	(CCL22)	0.2209	[NR] unit increase	Illumina [NR]	N
842	chr21	33750631	33750632	rs74652944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	21q22.11	NR	rs74652944-C	0.008125000000000049	3E-20		0.0658482	[0.052-0.08] unit increase	Affymetrix [16578495] (imputed)	N
842	chr21	33750631	33750632	rs74652944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	21q22.11	NR	rs74652944-C	0.008112000000000008	4E-31		0.182556	[0.15-0.21] unit increase	Affymetrix [16580851] (imputed)	N
842	chr21	33750631	33750632	rs74652944	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	21q22.11	NR	rs74652944-C	0.008174000000000015	2E-13		0.106351	[0.078-0.134] unit increase	Affymetrix [16585745] (imputed)	N
842	chr21	33786527	33786528	rs74618543	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	254 African American cases, 2,990 African American controls	NA	21q22.11		rs74618543-A	NR	2E-6		1.0844	unit increase	Illumina [NR] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		9E-6	(EA)	0.345	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		2E-6		0.336	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		3E-7		0.253	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		3E-6	(EA)	0.244	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		2E-7		0.243	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33788340	33788341	rs11701033	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.11	FAM176C	rs11701033-C		6E-8		0.178	unit decrease	Affymetrix [at least 2696785] (imputed)	N
842	chr21	33806285	33806286	rs77135980	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	21q22.11	NR	rs77135980-G		3E-8		0.1	[0.061-0.139] unit increase	NR [NR]	N
842	chr21	33808519	33808520	rs35933282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	21q22.11		rs35933282-T	NR	1E-8		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
842	chr21	33808519	33808520	rs35933282	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q22.11	EVA1C	rs35933282-C	0.903028	1E-9		0.00516422	[0.0034-0.0069] unit decrease	Affymetrix [13995440] (imputed)	N
843	chr21	33821914	33821915	rs8127011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.11		rs8127011-?	NR	4E-10				NR [~ 8900000] (imputed)	N
843	chr21	33860295	33860296	rs10084573	32568366	Raghavan NS	2020-06-22	JAMA Neurol	Association Between Common Variants in RBFOX1, an RNA-Binding Protein, and Brain Amyloidosis in Early and Preclinical Alzheimer Disease.	Brain amyloid deposition (PET imaging)	4,120 Europea ancestry individuals, 89 African American individuals, 105 Hispanic individuals	NA	21q22.11	NR	rs10084573-T		2E-6		0.3167	[0.19-0.45] unit increase	Illumina [NR] (imputed)	N
843	chr21	33868482	33868483	rs6517101	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer's disease	534 European ancestry APOEe4 carriers, 287 European ancestry APOEe4 non-carriers	NA		EVA1C	rs6517101-G	0.34	8E-6				Illumina [1679420] (imputed)	N
843	chr21	33868482	33868483	rs6517101	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA		EVA1C	rs6517101-G	0.349375	2E-12	(EVA1C, 8877_22_3)	0.17994153	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
843	chr21	33868482	33868483	rs6517101	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		EVA1C	rs6517101-G	0.331	6E-12	(Protein eva-1 homolog C, EVA1C.8877.22.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
843	chr21	33877690	33877691	rs2833856	33736632	Zeng Z	2021-03-18	BMC Med Genomics	Genome-wide association study identifies new loci associated with risk of HBV infection and disease progression.	Hepatitis B virus-related hepatocellular carcinoma vs chronic hepatitis B infection	214 Chinese ancestry hepatocellular carcinoma cases, 93 Chinese ancestry chronic hepatitis B controls	NA	21q22.11	EVA1C	rs2833856-C	0.4086	2E-6		0.3515	NR	Affymetrix [607153]	N
843	chr21	33882402	33882403	rs59652870	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EVA1C	5,356 Icelandic ancestry individuals	NA	21q22.11		rs59652870-C	0.4193	4E-18		0.159199	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
843	chr21	33888392	33888393	rs2833864	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	21q22.11	NR	rs2833864-C	0.241	6E-7	(IFNalpha_STAT1_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
843	chr21	33912272	33912273	rs2833870	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	21q22.11	SNORA33	rs2833870-T	0.94118325	9E-6		0.343228	[0.19-0.49] unit increase	Illumina [6969139] (imputed)	N
843	chr21	33925530	33925531	rs11088226	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	21q22.11	intergenic	rs11088226-G	NR	4E-6	(Males)	1.3	[NR]	NR [349184]	N
844	chr21	33948372	33948373	rs2833908	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q22.11	NR	rs2833908-?	NR	7E-15				Affymetrix [NR]	N
844	chr21	33979255	33979256	rs189916762	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	21q22.11	NR	rs189916762-?	NR	4E-6		0.1319	[0.076-0.188] unit increase	Illumina [at least 560000] (imputed)	N
844	chr21	33998283	33998284	rs845016	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	21q22.11	intergenic	rs845016-?	NR	3E-6	(BM4D-weighted model)			Illumina [501584]	N
844	chr21	34005199	34005200	rs7276140	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	21q22.11	SYNJ1	rs7276140-?	0.44	4E-6	(adjusted for CYP2C19*2)	0.12	NR unit decrease	Illumina [5009928] (imputed)	N
845	chr21	34088469	34088470	rs147991290	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	21q22.11	Intergenic	rs147991290-T	NR	3E-9	(between families)	5.943	unit decrease	Affymetrix [up to 15107142] (imputed)	N
845	chr21	34168572	34168573	rs2154427	20639394	Kang TW	2010-07-16	Hum Mol Genet	Genome-wide association of serum bilirubin levels in Korean population.	Bilirubin levels	8,841 Korean ancestry individuals	1,096 Korean ancestry individuals	21q22.11	C21orf49	rs2154427-?	0.013	1E-6		0.099	[NR] bilirubin level increase	Affymetrix [1227049] (imputed)	N
846	chr21	34214645	34214646	rs2833971	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.11	NR	rs2833971-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
846	chr21	34214645	34214646	rs2833971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.11		rs2833971-?	NR	3E-8				NR [~ 8900000] (imputed)	N
846	chr21	34262686	34262687	rs2833991	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.11	NR	rs2833991-C	0.0446738709390298	5E-6	(IGP14)	0.3471	[0.2-0.5] unit decrease	Illumina [~ 2500000] (imputed)	N
846	chr21	34279156	34279157	rs7282609	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	21q22.11	OLIG2, C21orf62	rs7282609-G	NR	3E-8		1.0341709	[1.02-1.05]	Affymetrix, Illumina [up to 7600000] (imputed)	N
846	chr21	34284360	34284361	rs28464592	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	21q22.11		rs28464592-A	0.24	1E-9		6.06	z score increase	Affymetrix [9061022] (imputed)	N
846	chr21	34288508	34288509	rs2898191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs2898191-A	0.6921	2E-9		0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
846	chr21	34288508	34288509	rs2898191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.11	Intergenic	rs2898191-A	0.6921	9E-10	(MTAG)	0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
846	chr21	34292373	34292374	rs56140206	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs56140206-T	0.6962	3E-9	(conditional-joint)	0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
846	chr21	34298973	34298974	rs12626790	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	21q22.11	NR	rs12626790-A	0.3716	2E-10	(Lateral Orbitofrontal)	8.8476095	[6.11-11.58] unit decrease	Affymetrix, Illumina [NR]	N
846	chr21	34299501	34299502	rs2834011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	21q22.11		rs2834011-?	NR	4E-9				NR [~ 8900000] (imputed)	N
846	chr21	34314477	34314478	rs2834018	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	21q22.11	NR	rs2834018-A	0.251	2E-6		0.0142	[0.0083-0.0201] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
846	chr21	34314477	34314478	rs2834018	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Life satisfaction	166,205 European ancestry individuals	NA	21q22.11	NR	rs2834018-A	0.249	1E-6		0.0195	[0.012-0.027] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
847	chr21	34343827	34343828	rs4817505	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 80)	19,670 European ancestry individuals	NA	21q22.11		rs4817505-?	NR	5E-39				NR [9705931] (imputed)	N
847	chr21	34343827	34343828	rs4817505	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	21q22.11	OLIG2	rs4817505-T	0.607874	4E-11		0.01512	[0.011-0.02] unit decrease	Affymetrix [19400838] (imputed)	N
847	chr21	34343827	34343828	rs4817505	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	21q22.11	OLIG2	rs4817505-C	0.3882	2E-12		0.0109	[0.0078-0.014] unit increase	Affymetrix [~ 7740000] (imputed)	N
847	chr21	34354061	34354062	rs8132517	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q22.11	NR	rs8132517-?		2E-6				Illumina [4322238] (imputed)	N
847	chr21	34358824	34358825	rs28371438	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.11		rs28371438-?	NR	4E-8				NR [~ 8900000] (imputed)	N
847	chr21	34369760	34369761	rs117124364	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	21q22.11	OLIG2	rs117124364-C	0.977	9E-6		0.16	[0.089-0.231] unit decrease	Illumina [6150213] (imputed)	N
847	chr21	34386290	34386291	rs9983084	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs9983084-G	0.0688	8E-6		1.418		NR [11110260] (imputed)	N
847	chr21	34386598	34386599	rs9983364	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs9983364-C	0.0692	5E-6		1.424		NR [11110260] (imputed)	N
847	chr21	34387380	34387381	rs34180308	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs34180308-A	0.0688	6E-6		1.424		NR [11110260] (imputed)	N
847	chr21	34387447	34387448	rs35997749	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs35997749-G	0.0688	6E-6		1.424		NR [11110260] (imputed)	N
847	chr21	34389728	34389728	rs61584346	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs61584346-GAGA	0.069	6E-6		1.423		NR [11110260] (imputed)	N
847	chr21	34390218	34390219	rs9978364	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs9978364-A	0.0688	5E-6		1.426		NR [11110260] (imputed)	N
847	chr21	34390432	34390433	rs9978551	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	21q22.11		rs9978551-C	0.0689	7E-6		1.422		NR [11110260] (imputed)	N
847	chr21	34392682	34392683	rs35474228	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q22.11	NR	rs35474228-?		9E-6				Illumina [4322238] (imputed)	N
847	chr21	34398177	34398178	rs2009130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.11	OLIG2	rs2009130-G	0.743294	4E-10		0.01597472	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
847	chr21	34398177	34398178	rs2009130	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.11	OLIG2	rs2009130-G	0.743283	2E-9		0.015345135	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
847	chr21	34406982	34406983	rs73202434	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AP000282.1	rs73202434-?	NR	9E-9	(male)	1.18762	[NR] unit decrease	Affymetrix [NR] (imputed)	N
847	chr21	34406982	34406983	rs73202434	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AP000282.1	rs73202434-?	NR	2E-9		1.12729	[NR] unit decrease	Affymetrix [NR] (imputed)	N
847	chr21	34432791	34432792	rs2834081	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.11	AP000282.2, LINC00945	rs2834081-T	0.747	4E-10		0.02598471	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
847	chr21	34433050	34433051	rs1000005	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	21q22.11	NR	rs1000005-C	0.588	3E-8		0.009815596	[0.0063-0.0133] unit decrease	Affymetrix [NR] (imputed)	N
847	chr21	34433050	34433051	rs1000005	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.11	AP000282.2, LINC00945	rs1000005-C	0.5894	2E-13		0.02652552	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
847	chr21	34433050	34433051	rs1000005	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.11	AP000282.2, LINC00945	rs1000005-C	0.5894	7E-12		0.02481715	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
847	chr21	34435618	34435619	rs7275426	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	21q22.11	NR	rs7275426-T	0.5731	2E-8		0.013196155	[0.0086-0.0178] unit decrease	Affymetrix [10613246] (imputed)	N
847	chr21	34439205	34439206	rs6517139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.11		rs6517139-G	NR	3E-17		0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
847	chr21	34439888	34439889	rs928736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.11	AP000282.2	rs928736-T	0.694173	4E-24		0.024693673	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
847	chr21	34439888	34439889	rs928736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.11	AP000282.2	rs928736-T	0.694165	5E-21		0.022907972	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
847	chr21	34439888	34439889	rs928736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs928736-T	0.713535	5E-26				Affymetrix, Illumina [19872809] (imputed)	N
847	chr21	34439888	34439889	rs928736	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.11	NR	rs928736-T	0.694481	1E-29		0.024684	[0.02-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
847	chr21	34439888	34439889	rs928736	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	21q22.11	LINC00945	rs928736-C	0.3064	4E-8		0.0061	[0.0039-0.0083] unit increase	Affymetrix [~ 7740000] (imputed)	N
847	chr21	34439888	34439889	rs928736	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.11		rs928736-?	NR	9E-19				NR [~ 8900000] (imputed)	N
847	chr21	34439888	34439889	rs928736	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	21q22.11	AP000282.2	rs928736-T	0.6932	5E-14		0.02967945	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
847	chr21	34439888	34439889	rs928736	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.11	AP000282.2	rs928736-T	0.6931	6E-15		0.03070839	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
847	chr21	34457105	34457106	rs11702741	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	21q22.11		rs11702741-A	0.27	1E-12		7.13	z score increase	Affymetrix [9061022] (imputed)	N
847	chr21	34457105	34457106	rs11702741	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	21q22.11	NR	rs11702741-A	0.2868	1E-8				NR [9056863] (imputed)	N
847	chr21	34457105	34457106	rs11702741	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	21q22.11	NR	rs11702741-A	0.2868	6E-15				NR [9056863] (imputed)	N
847	chr21	34460213	34460214	rs4817523	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	21q22.11		rs4817523-A	0.27	3E-17		8.45	z score increase	Affymetrix [9061022] (imputed)	N
848	chr21	34526363	34526364	rs142399612	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	21q22.11	Intergenic	rs142399612-G	NR	5E-6	(women)	0.606009	[0.35-0.87] unit increase	Illumina [13520550] (imputed)	N
848	chr21	34527378	34527379	rs112686226	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	21q22.11	IFNAR2	rs112686226-G	NR	6E-6		2.903	[1.831-4.602]	Illumina [5407269] (imputed)	N
848	chr21	34529233	34529234	rs2834114	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	21q22.11	AP000290.7	rs2834114-T	0.58	9E-6		0.46	[0.26-0.66] unit increase	Illumina [5833901] (imputed)	N
848	chr21	34542786	34542787	rs6517147	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	21q22.11	intergenic	rs6517147-?	NR	7E-7	(Interleukin-2 soluble receptor-a)			Affymetrix [2543887] (imputed)	N
848	chr21	34543844	34543845	rs77224013	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	21q22.11	IFNAR2	rs77224013-A	NR	1E-6		3.869	[2.252-6.647]	Illumina [5407269] (imputed)	N
848	chr21	34555502	34555503	rs4817543	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	21q22.11	IFNAR2, C21orf54	rs4817543-?	0.6489	6E-7		5.263158		Affymetrix [757439]	N
848	chr21	34581736	34581737	rs73360220	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	21q22.11	NR	rs73360220-C	0.137	1E-11	(IFNAR2_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
848	chr21	34592049	34592050	rs28488669	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	21q22.11	NR	rs28488669-G	0.254	2E-10	(IFNAR2_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
848	chr21	34596612	34596613	rs188556805	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	21q22.11	NR	rs188556805-C	0.005	2E-7		9.14	[3.95-21.15]	Illumina [7959153] (imputed)	N
849	chr21	34603879	34603880	rs2248202	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	21q22.11	NR	rs2248202-C	0.351	4E-9	(IFNAR2_of_CD8p_T)			Illumina [5084123] (imputed)	N
849	chr21	34614833	34614834	rs9976829	33949668	Ma Y	2021-05-05	Hum Mol Genet	Integrative Genomics Analysis Reveals a 21q22.11 Locus Contributing Risk to COVID-19.	COVID-19	3,288 European ancestry cases, 676,840 European ancestry controls	NA		IFNAR2, IL10RB	rs9976829-?		3E-6		1.16	[1.09-1.23]	NR [8424883] (imputed)	N
849	chr21	34615209	34615210	rs13050728	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	21q22.11		rs13050728-C	0.6511	3E-20		0.8608199	[0.8338527591429614-0.8886591191741529]	Affymetrix, Illumina [NR] (imputed)	N
849	chr21	34615209	34615210	rs13050728	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	21q22.11		rs13050728-C	0.6617	1E-16		0.81885356	[0.7811041370023486-0.8584273728086177]	Illumina [NR] (imputed)	N
849	chr21	34615209	34615210	rs13050728	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	21q22.11		rs13050728-T	NR	5E-12		1.2	[1.16-1.28]	Illumina [NR] (imputed)	N
849	chr21	34618284	34618285	rs2284550	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.11		rs2284550-?	NR	1E-11				NR [~ 8900000] (imputed)	N
849	chr21	34625589	34625590	rs13047715	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q22.11	IFNAR2	rs13047715-?		1E-6				Illumina [4322238] (imputed)	N
849	chr21	34625997	34625998	rs4817554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.11	IFNAR2, AP000295.9	rs4817554-G	0.50429	5E-10		0.013786191	[0.0094-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr21	34625997	34625998	rs4817554	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.11	IFNAR2, AP000295.9	rs4817554-G	0.504288	2E-10		0.014128822	[0.0098-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
849	chr21	34640787	34640788	rs2834167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RB	5,340 Icelandic ancestry individuals	NA	21q22.11		rs2834167-G	0.2556	5E-12		0.123671	[0.089-0.159] unit decrease	Illumina [7506463] (imputed)	N
849	chr21	34640787	34640788	rs2834167	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.11	IL10RB	rs2834167-A	0.73203125	1E-8	(IL10RB, 2631_50_2)	0.16044502	[0.11-0.22] unit increase	Illumina [> 1000000] (imputed)	N
849	chr21	34650790	34650791	rs2834168	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	21q22.11	IL10RB	rs2834168-?	NR	5E-6		1.1363636	[1.04-1.25]	Illumina [111240]	N
849	chr21	34664038	34664039	rs2843700	32641083	Hillary RF	2020-07-08	Genome Med	Multi-method genome- and epigenome-wide studies of inflammatory protein levels in healthy older adults.	Interleukin-10 receptor B levels	982 Scottish ancestry individuals	NA	21q22.11	NR	rs2843700-T	0.47515	3E-15		0.3866	[0.29-0.48] unit increase	Illumina [7903493] (imputed)	N
849	chr21	34689252	34689253	rs2834188	24204295	Han F	2013-10-31	PLoS Genet	Genome wide analysis of narcolepsy in China implicates novel immune loci and reveals changes in association prior to versus after the 2009 H1N1 influenza pandemic.	Narcolepsy	1,189 Chinese ancestry cases, 1,997 Chinese ancestry controls	2,693 European ancestry cases, 11,495 European ancestry controls	21q22.11	IL10RB, INFAR1	rs2834188-?	0.705	2E-8		1.3	[1.18-1.41]	Affymetrix [603382]	N
849	chr21	34696180	34696181	rs71314176	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	21q22.11	IL10RB	rs71314176-G	NR	8E-6		1.0854	NR	Affymetrix, Illumina [8278136] (imputed)	N
849	chr21	34713473	34713474	rs142890975	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,364 Icelandic ancestry individuals	NA	21q22.11		rs142890975-T	0.01963	1E-41		0.886362	[0.76-1.01] unit decrease	Illumina [7506463] (imputed)	N
849	chr21	34715698	34715699	rs2257167	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IFNAR1	5,364 Icelandic ancestry individuals	NA	21q22.11		rs2257167-C	0.1243	1E-53		0.429268	[0.37-0.48] unit decrease	Illumina [7506463] (imputed)	N
849	chr21	34715698	34715699	rs2257167	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.11	IFNAR1	rs2257167-G	0.87296875	3E-32	(IFNAR1, 9183_7_3)	0.44066754	[0.37-0.51] unit increase	Illumina [> 1000000] (imputed)	N
849	chr21	34715698	34715699	rs2257167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.11	IFNAR1	rs2257167-C	0.134	1E-15	(Interferon alpha/beta receptor 1, IFNAR1.9183.7.3)	0.29	[0.21-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
850	chr21	34734509	34734510	rs9980664	24468470	Zhang C	2013-12-26	Neurobiol Aging	Genetic susceptibility to accelerated cognitive decline in the US Health and Retirement Study.	Cognitive decline (age-related)	5,765 European ancestry individuals, 890 African American individuals	NA	21q22.11	intergenic	rs9980664-?	NR	3E-6	(EA)	0.0272	[0.01569-0.03866] unit increase	Illumina [1530316]	N
850	chr21	34764287	34764288	rs73194058	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.11	IFNGR2	rs73194058-A	NR	8E-7		0.0760395	[-0.02853-0.18061] unit decrease	Illumina [8380626] (imputed)	N
850	chr21	34764287	34764288	rs73194058	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.11	IFNGR2	rs73194058-A	0.13	7E-8	(EA)	0.12899	[0.082-0.176] unit decrease	Illumina [8380626] (imputed)	N
850	chr21	34764287	34764288	rs73194058	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.11	IFNGR2	rs73194058-C	0.87	3E-8	(EA)	1.13	[1.08-1.18]	Affymetrix, Illumina [up to 9739303] (imputed)	N
850	chr21	34764287	34764288	rs73194058	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.11	IFNGR2	rs73194058-C	0.76	1E-6		1.08	[1.05-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
850	chr21	34765344	34765345	rs138262539	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	21q22.11	IFNGR2	rs138262539-G	0.0102928716981011	5E-6		0.012394	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
850	chr21	34775443	34775444	rs8126756	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	21q22.11		rs8126756-T	NR	2E-9		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
850	chr21	34776694	34776695	rs2284553	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	21q22.11	IFNGR2	rs2284553-?		7E-9				Illumina [9725440] (imputed)	N
850	chr21	34776694	34776695	rs2284553	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	21q22.11	IFNGR2	rs2284553-?		1E-14				Illumina [9560910] (imputed)	N
850	chr21	34776694	34776695	rs2284553	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	21q22.11	IFNGR2	rs2284553-?	NR	4E-16	(subset analysis)			Illumina [130052]	N
850	chr21	34776694	34776695	rs2284553	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.11	NR	rs2284553-G	0.59	5E-9	(EA)	1.061271		Affymetrix, Illumina [~ 9000000] (imputed)	N
850	chr21	34776694	34776695	rs2284553	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.11	NR	rs2284553-G	0.59	6E-17	(EA)	1.1087041	[1.08-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
850	chr21	34776694	34776695	rs2284553	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Crohn's disease	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	21q22.11	IFNGR2, IFNAR1, IFNAR2, IL10RB, GART, TMEM50B	rs2284553-G	0.599	2E-16		1.123	[1.086-1.162]	Affymetrix, Illumina [1230000] (imputed)	N
850	chr21	34781049	34781050	rs2268241	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.11	IFNGR2	rs2268241-A	0.201	5E-6	(QUICKl)	0.03	[NR] unit increase	Illumina [899892]	N
850	chr21	34787311	34787312	rs9808753	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	21q22.11	IFNGR2	rs9808753-G	NR	2E-9		1.082	NR	Affymetrix, Illumina [8278136] (imputed)	N
850	chr21	34787311	34787312	rs9808753	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	21q22.11	IFNGR2	rs9808753-?		3E-8		1.0869565	[1.05-1.11]	Illumina [87827]	N
850	chr21	34787311	34787312	rs9808753	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	21q22.11	IFNGR2	rs9808753-G	0.14	1E-7		1.09	[1.06-1.13]	Illumina [161311]	N
850	chr21	34787690	34787691	rs186570591	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	21q22.11	NR	rs186570591-?	NR	7E-6		0.69705	[0.39-1] unit increase	NR [13958389] (imputed)	N
850	chr21	34796885	34796886	rs2834215	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	21q22.11	IFNGR2	rs2834215-?	0.58	3E-7		1.22	[1.12-1.32]	Illumina [508934]	N
850	chr21	34819647	34819647	rs11273486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	21q22.11		rs11273486-TAGTCCTAGCTACTC	NR	2E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
850	chr21	34824575	34824576	rs78462601	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		IFNGR2	rs78462601-?	NR	8E-10	(female)	0.391025	[NR] unit increase	Affymetrix [NR] (imputed)	N
850	chr21	34837047	34837048	rs57996174	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	21q22.11	IFNAR1	rs57996174-C	0.249	7E-6	(Chinese)	1.13	[1.07-1.19]	Illumina [up to 4778154] (imputed)	N
850	chr21	34837047	34837048	rs57996174	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	21q22.11	IFNAR1	rs57996174-C	0.104	5E-6		1.12	[1.06-1.17]	Illumina [up to 4778154] (imputed)	N
850	chr21	34839087	34839088	rs34046682	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	21q22.11		rs34046682-G	NR	3E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
851	chr21	34888620	34888621	rs6517178	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	21q22.11	GART	rs6517178-?		2E-7		1.08	1.04-1.11	Illumina [87827]	N
851	chr21	34919843	34919844	rs144380101	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SON	rs144380101-?	NR	1E-9	(female)	0.411854	[NR] unit increase	Affymetrix [NR] (imputed)	N
851	chr21	34925688	34925689	rs61739710	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs61739710-A	0.2813	4E-10		0.0099	[0.0068-0.013] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
851	chr21	34928354	34928355	rs7281554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.11		rs7281554-?	NR	5E-14				NR [~ 8900000] (imputed)	N
851	chr21	34929421	34929422	rs2070389	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.11	Intergenic	rs2070389-T	0.7157	4E-9	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
851	chr21	34945720	34945721	rs3174808	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	21q22.11	SON	rs3174808-?		1E-8		1.1	1.05-1.12	Illumina [87827]	N
852	chr21	35016136	35016137	rs1892700	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	21q22.11	CRYZL1, ITSN1, GART, DNAJC28, TMEM50B, IFNGR2	rs1892700-A	0.256	3E-6		0.023	[NR] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
852	chr21	35044574	35044575	rs117941090	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	21q22.11	NA	rs117941090-T		2E-8		0.0403977	[0.026-0.054] unit decrease	Illumina [13288253] (imputed)	N
852	chr21	35052995	35053002	rs200746495	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	21q22.11	ITSN1	rs200746495-?	0.87	4E-9		1.07	[1.06-1.09]	Illumina [at least 560000] (imputed)	N
852	chr21	35052995	35053002	rs200746495	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	21q22.11	ITSN1	rs200746495-?	NR	4E-9		1.0752687	[1.05-1.1]	Illumina [13757430] (imputed)	N
852	chr21	35089711	35089712	rs11702148	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	21q22.11	ITSN1, AP000304.12	rs11702148-T	0.3411	8E-29		0.04166059	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
852	chr21	35093212	35093213	rs2834253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	21q22.11		rs2834253-C	NR	3E-18		0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
852	chr21	35093212	35093213	rs2834253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	21q22.11		rs2834253-C	NR	2E-61		0.0337	[0.03-0.038] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
852	chr21	35093212	35093213	rs2834253	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834253-C	0.378099	6E-19		0.020419493	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
852	chr21	35093212	35093213	rs2834253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834253-C	0.418128	1E-23				Affymetrix, Illumina [24332387] (imputed)	N
852	chr21	35093212	35093213	rs2834253	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834253-C	0.416617	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
852	chr21	35093212	35093213	rs2834253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.11		rs2834253-?	NR	5E-9				NR [~ 8900000] (imputed)	N
852	chr21	35098664	35098665	rs35529650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	21q22.11		rs35529650-C	NR	1E-14		0.0163	[0.012-0.02] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
852	chr21	35107733	35107734	rs3827181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q22.11		rs3827181-?	NR	2E-70				NR [~ 8900000] (imputed)	N
852	chr21	35115838	35115841	rs71322242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs71322242-C	0.342695	2E-9		0.0140556	[0.0095-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr21	35124252	35124253	rs2834255	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	21q22.11	ITSN1	rs2834255-G	0.8041	5E-7		0.0102	[0.0063-0.0141] unit increase	Affymetrix [~ 7740000] (imputed)	N
852	chr21	35125077	35125078	rs7280640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs7280640-G	0.382422	1E-99				Affymetrix, Illumina [24246363] (imputed)	N
852	chr21	35125077	35125078	rs7280640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	21q22.11	NR	rs7280640-C	0.417023	6E-11		0.027104	[0.019-0.035] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
852	chr21	35125372	35125373	rs2834256	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	21q22.11		rs2834256-A	0.655	1E-51		0.18	[0.15-0.2] % increase	Affymetrix [NR] (imputed)	N
852	chr21	35125372	35125373	rs2834256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834256-T	0.345642	5E-66		0.040123437	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
852	chr21	35125372	35125373	rs2834256	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834256-T	0.345	7E-26		0.0393018	[0.032-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
852	chr21	35126296	35126297	rs2834257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	21q22.11		rs2834257-A	0.582976	4E-12		0.0253199	[0.018-0.032] unit decrease	Illumina [13476266] (imputed)	N
852	chr21	35126296	35126297	rs2834257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	21q22.11		rs2834257-A	0.582493	2E-12		0.0260318	[0.019-0.033] unit decrease	Illumina [13476299] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834257-A	0.34577	2E-26		0.025098266	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834257-A	0.345825	4E-9		0.013947135	[0.0093-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834257-A	0.345771	4E-74		0.0421769	[0.038-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.11	ITSN1, AP000304.12	rs2834257-A	0.345787	8E-78		0.043474108	[0.039-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834257-G	0.658489	5E-75				Affymetrix, Illumina [22063850] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	21q22.11	NR	rs2834257-G	0.657	1E-78		0.037373	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q22.11	NR	rs2834257-A	0.342224	3E-23		0.019455	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	21q22.11	NR	rs2834257-A	0.34221	8E-95		0.039715	[0.036-0.043] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	21q22.11	NR	rs2834257-A	0.34374	6E-12		0.014546	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834257-A	0.387537	7E-102				Affymetrix, Illumina [20825802] (imputed)	N
852	chr21	35126296	35126297	rs2834257	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.11	NR	rs2834257-A	0.343907	2E-96		0.042414	[0.038-0.046] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
852	chr21	35126296	35126297	rs2834257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.11		rs2834257-?	NR	4E-20				NR [~ 8900000] (imputed)	N
853	chr21	35133090	35133091	rs2834259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	21q22.11		rs2834259-T	NR	3E-68		0.0361	[0.032-0.04] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
853	chr21	35133090	35133091	rs2834259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.11		rs2834259-?	NR	2E-91				NR [~ 8900000] (imputed)	N
853	chr21	35133090	35133091	rs2834259	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	21q22.11	DONSON	rs2834259-T	NR	2E-19		0.0370149	[0.029-0.045] unit increase	Affymetrix [16832071] (imputed)	N
853	chr21	35150946	35150947	rs71326967	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	21q22.11	ITSN1, AP000304.12	rs71326967-G	0.3433	1E-26		0.04005548	[0.033-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
853	chr21	35243693	35243694	rs11911974	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.11	ITSN1	rs11911974-?	NR	2E-8		0.016218984	[0.011-0.022] unit decrease	Illumina [27896057] (imputed)	N
853	chr21	35247459	35247460	rs2298679	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	21q22.11	ITSN1	rs2298679-T	0.2	7E-7		1.38	[0.83-1.93] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
853	chr21	35252695	35252696	rs743316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs743316-T	0.7915	8E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
853	chr21	35252695	35252696	rs743316	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.11	Intergenic	rs743316-T	0.7915	2E-10	(MTAG)	0.0102	[0.0071-0.0133] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
853	chr21	35253917	35253918	rs9978563	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.11		rs9978563-T	0.4755	1E-9	(conditional-joint)	0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
854	chr21	35264396	35264397	rs2834288	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	21q22.11	AP000304.12	rs2834288-G	NR	2E-8	(k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Oscillospiraceae|g__Oscillibacter)	5.616037	NR Z-score decrease	Illumina [8100000] (imputed)	N
854	chr21	35264396	35264397	rs2834288	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	21q22.11	AP000304.12	rs2834288-G	NR	2E-8	(k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Oscillospiraceae)	5.616037	NR Z-score decrease	Illumina [8100000] (imputed)	N
854	chr21	35274964	35274965	rs118136136	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	21q22.11	ATP5O	rs118136136-T	0.09	9E-7		0.3363	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
854	chr21	35281420	35281421	rs4842	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.11	ATP5O	rs4842-C		4E-15		0.028	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
854	chr21	35288831	35288832	rs55704849	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	21q22.11	NR	rs55704849-C	NR	2E-11		0.0223	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
854	chr21	35296138	35296139	rs74989317	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	21q22.11	LINC00649	rs74989317-A	0.04	2E-6		0.99	[0.6-1.38] unit decrease	Illumina [~ 31000000] (imputed)	N
854	chr21	35303772	35303773	rs8129054	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.11	LINC00649	rs8129054-G	0.269546	3E-10		0.024171691	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35320940	35320941	rs35184820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	21q22.11		rs35184820-?	NR	2E-11				NR [~ 8900000] (imputed)	N
854	chr21	35343933	35343934	rs2834310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	21q22.11		rs2834310-G	NR	9E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
854	chr21	35343933	35343934	rs2834310	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	21q22.11	LINC00649	rs2834310-A	0.547	2E-9		0.0041	[0.0027-0.0055] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
854	chr21	35346855	35346856	rs35542019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.11	LINC00649	rs35542019-T	0.575938	2E-17		0.01917512	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr21	35346855	35346856	rs35542019	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.11	LINC00649	rs35542019-T	0.57594	6E-23		0.024896536	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr21	35346855	35346856	rs35542019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	21q22.11	LINC00649	rs35542019-T	0.575	2E-11		0.02411232	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr21	35346855	35346856	rs35542019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q22.11	LINC00649	rs35542019-T	0.5749	7E-14		0.02693789	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr21	35346855	35346856	rs35542019	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	21q22.11	LINC00649	rs35542019-T	0.575	4E-16		0.02915033	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
854	chr21	35347959	35347960	rs743417	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.11	LINC00649	rs743417-T	0.576553	7E-16		0.019675825	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr21	35347959	35347960	rs743417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.11		rs743417-?	NR	5E-18				NR [~ 8900000] (imputed)	N
854	chr21	35349284	35349285	rs1034332	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	21q22.11		rs1034332-C	NR	5E-14		0.0194	[0.014-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
854	chr21	35349284	35349285	rs1034332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.11	LINC00649	rs1034332-C	0.229564	7E-19		0.023959823	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35349284	35349285	rs1034332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.11	LINC00649	rs1034332-C	0.229531	3E-18		0.0235608	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35349284	35349285	rs1034332	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs1034332-C	0.195513	7E-24				Affymetrix, Illumina [24588908] (imputed)	N
854	chr21	35349370	35349371	rs2834312	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q22.11	NR	rs2834312-C	0.226958	5E-24		0.02223	[0.018-0.027] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
854	chr21	35354522	35354523	rs2032314	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	21q22.11	ATP5O	rs2032314-T	0.08	8E-10	(PCV)	0.154	[0.087-0.221] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
854	chr21	35356705	35356706	rs2834317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	21q22.11		rs2834317-A	NR	5E-13		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
854	chr21	35356705	35356706	rs2834317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	21q22.11		rs2834317-A	NR	1E-27		0.027	[0.022-0.032] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
854	chr21	35356705	35356706	rs2834317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.11		rs2834317-A	NR	9E-21		0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
854	chr21	35356705	35356706	rs2834317	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	21q22.11	NR	rs2834317-A	0.15	5E-12		0.0175	[0.012-0.023] unit increase	NR [NR]	N
854	chr21	35356705	35356706	rs2834317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.11		rs2834317-A	0.153962	1E-9		0.021194182	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr21	35356705	35356706	rs2834317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.11		rs2834317-A	0.153971	1E-19		0.038599283	[0.03-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
854	chr21	35356705	35356706	rs2834317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834317-A	0.132242	2E-42				Affymetrix, Illumina [24653286] (imputed)	N
854	chr21	35356705	35356706	rs2834317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.11	NR	rs2834317-A	0.153457	7E-42		0.034984	[0.03-0.04] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
854	chr21	35356705	35356706	rs2834317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.11	NR	rs2834317-A	0.132581	6E-47				Affymetrix, Illumina [24558453] (imputed)	N
854	chr21	35356705	35356706	rs2834317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q22.11	NR	rs2834317-A	0.153489	2E-46		0.036859	[0.032-0.042] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
854	chr21	35356705	35356706	rs2834317	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	21q22.11	LOC101928126	rs2834317-A	0.1425	3E-18		0.0035	[0.0025-0.0045] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
854	chr21	35356705	35356706	rs2834317	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	21q22.11	LOC101928126	rs2834317-A	0.1518	1E-14		0.0031	[0.0021-0.0041] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
854	chr21	35356705	35356706	rs2834317	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	21q22.11	LOC105372790	rs2834317-G	0.8977	2E-8		5.652	NR z score increase	Illumina [26237160] (imputed)	N
854	chr21	35356705	35356706	rs2834317	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	21q22.11	ATP50	rs2834317-A	0.108	1E-9		0.475	[0.23-0.72] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
854	chr21	35356813	35356814	rs2834318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.11		rs2834318-T	0.658368	2E-16		0.019423803	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35356813	35356814	rs2834318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.11		rs2834318-T	0.658359	3E-12		0.01712768	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35356813	35356814	rs2834318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.11		rs2834318-T	0.658356	2E-18		0.023916885	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
854	chr21	35357024	35357025	rs2834319	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	21q22.11	LOC101928126	rs2834319-T	0.8509	9E-9		0.0261	[0.017-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
854	chr21	35357024	35357025	rs2834319	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	21q22.11	LOC101928126	rs2834319-T	0.8357	4E-6		0.023888	[0.014-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
854	chr21	35357633	35357636	rs551115381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.11		rs551115381-A	NR	4E-21		0.0239	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
854	chr21	35358248	35358249	rs7275655	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	21q22.11		rs7275655-G	0.87	9E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
854	chr21	35362847	35362848	rs111783124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q22.11		rs111783124-?	NR	1E-35				NR [~ 8900000] (imputed)	N
854	chr21	35368401	35368402	rs12627254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	21q22.11	LINC00649	rs12627254-T	0.1279	2E-18		0.0331	[0.026-0.041] unit increase	Affymetrix [19819130] (imputed)	N
854	chr21	35368401	35368402	rs12627254	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	21q22.11	LINC00649	rs12627254-T	0.1279	7E-24		0.0357	[0.029-0.043] unit increase	Affymetrix [19819130] (imputed)	N
855	chr21	35464686	35464687	rs147050753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.11		rs147050753-?	NR	9E-12				NR [~ 8900000] (imputed)	N
855	chr21	35468604	35468605	rs35707420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.11	NR	rs35707420-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
855	chr21	35517483	35517484	rs12627687	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	21q22.11	Intergenic	rs12627687-?		8E-6		1.3	[NR]	Affymetrix [492217] (imputed)	N
856	chr21	35537193	35537193	rs60938702	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	21q22.11		rs60938702-A	0.507428	2E-8		0.0231451	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
856	chr21	35560714	35560715	rs12482821	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.11	LINC00310	rs12482821-T	0.979327	7E-13		0.0468332	[0.034-0.06] unit decrease	NR [13737936] (imputed)	N
856	chr21	35560714	35560715	rs12482821	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.11		rs12482821-?	NR	3E-22		0.0654682	[0.051-0.08] unit decrease	Affymetrix [20259828] (imputed)	N
856	chr21	35591825	35591826	rs8134775	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.11	LINC00310	rs8134775-T	0.79898	7E-12		0.016863	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
856	chr21	35591825	35591826	rs8134775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.11		rs8134775-?	NR	1E-27				NR [~ 8900000] (imputed)	N
856	chr21	35591825	35591826	rs8134775	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.11		rs8134775-?	NR	9E-30		0.0286174	[0.023-0.034] unit decrease	Affymetrix [20259828] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	21q22.11		rs28451064-A	NR	4E-13		0.1256	[0.092-0.16] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	21q22.11		rs28451064-A	NR	2E-9		0.0193	[0.013-0.026] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	21q22.11		rs28451064-A	NR	3E-19		0.1493	[0.12-0.18] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	21q22.11		rs28451064-A	NR	1E-11		0.0243	[0.017-0.031] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Angina pectoris	30,025 European ancestry cases, 440,906 European ancestry controls, 14,007 East Asian ancestry cases, 145,158 East Asian ancestry controls	NA	21q22.11		rs28451064-A	NR	2E-16		0.1163	[0.089-0.144] unit increase	Affymetrix, Illumina [25842036] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	21q22.11	AP000320.7, AP000318.2	rs28451064-A	NR	5E-11		0.0309416	[0.022-0.04] unit increase	Affymetrix [323858] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	21q22.11	AP000320.7, AP000318.2	rs28451064-A	NR	7E-11		0.0307342	[0.021-0.04] unit increase	Affymetrix [127266] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.11	AP000320.7, AP000318.2	rs28451064-A	NR	3E-10		0.0272916	[0.019-0.036] unit increase	Affymetrix [321114] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	21q22.11	AP000320.7, AP000318.2	rs28451064-A	NR	3E-8		0.025797	[0.017-0.035] unit decrease	Affymetrix [323123] (imputed)	N
856	chr21	35593826	35593827	rs28451064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.11	AP000320.7, AP000318.2	rs28451064-A	NR	7E-11		0.0281891	[0.02-0.037] unit increase	Affymetrix [321169] (imputed)	N
856	chr21	35593826	35593827	rs28451064	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	21q22.11	MRPS6	rs28451064-A	0.12293	3E-22		1.12	[1.10-1.15]	NR [8126035] (imputed)	N
856	chr21	35593826	35593827	rs28451064	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	21q22.11	MRPS6	rs28451064-A	0.126529	7E-12		1.12	[1.08-1.16]	NR [10903881] (imputed)	N
856	chr21	35593826	35593827	rs28451064	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 243 European ancestry cases, up to 23 East Asian ancestry cases, up to 4,816 European ancestry controls, up to 447 East Asian ancestry controls	up to 149 European ancestry cases, up to 14 East Asian ancestry cases, up to 2,935 European ancestry controls, up to 272 East Asian ancestry controls	21q22.11	LINC00310	rs28451064-G	0.87	1E-7		0.597	[0.38-0.82] unit increase	Illumina [6690240] (imputed)	N
856	chr21	35593826	35593827	rs28451064	32887874	Saw J	2020-09-04	Nat Commun	Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction.	Spontaneous coronary artery dissection	up to 221 European ancestry female cases, up to 20 East Asian ancestry female cases, up to 4,258 European ancestry female controls, up to 395 East Asian ancestry female controls	up to 134 European ancestry female cases, up to 12 East Asian ancestry female cases, up to 2,608 European ancestry female controls, up to 242 East Asian female controls	21q22.11	LINC00310	rs28451064-G	0.8723	3E-8		0.6682	[0.43-0.9] unit increase	Illumina [6690240] (imputed)	N
856	chr21	35593826	35593827	rs28451064	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	21q22.11	NR	rs28451064-?	NR	2E-10				NR [up to 7000000]	N
856	chr21	35593826	35593827	rs28451064	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	21q22.11	LINC00310	rs28451064-G	0.86	1E-9		2.18	[1.70-2.81]	Illumina [~ 5000000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.11	NR	rs28451064-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.11	NR	rs28451064-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.11	LINC00310	rs28451064-G	0.8752	1E-9		0.0173975	[0.012-0.023] unit increase	NR [13737936] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q22.11		rs28451064-?	NR	3E-12				NR [~ 8900000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.11	LINC00310	rs28451064-A	0.1251	4E-8		0.1708	[0.11-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	21q22.11	NR	rs28451064-A	0.1268	3E-9		0.018	[0.012-0.024] unit increase	NR [~ 27400000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	21q22.11	NA	rs28451064-A	0.1268	4E-9		0.0177	[0.012-0.024] unit increase	NR [~ 27400000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	21q22.11	LINC00310, KCNE2	rs28451064-A	0.132	1E-14				Affymetrix [28000000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.11		rs28451064-?	NR	2E-12		0.0219937	[0.016-0.028] unit increase	Affymetrix [20259828] (imputed)	N
856	chr21	35593826	35593827	rs28451064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	21q22.11	intergenic	rs28451064-A	0.1239	3E-33		0.1083	[0.091-0.126] unit increase	Affymetrix [at least 7947838] (imputed)	N
856	chr21	35593826	35593827	rs28451064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	21q22.11	intergenic	rs28451064-A	0.1236	7E-33		0.1193	[0.1-0.139] unit increase	NR [8041861] (imputed)	N
856	chr21	35593826	35593827	rs28451064	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	21q22.11	intergenic	rs28451064-A	0.124	7E-33		0.119	[0.099-0.139] unit increase	Affymetrix [7947838] (imputed)	N
856	chr21	35593826	35593827	rs28451064	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	21q22.11	KCNE2	rs28451064-A	0.124	3E-23		1.14	[1.11-1.17]	Affymetrix [9149595] (imputed)	N
856	chr21	35593826	35593827	rs28451064	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	21q22.11	KCNE2	rs28451064-A	0.13	2E-8		1.18	[1.11-1.25]	Affymetrix [9061845] (imputed)	N
856	chr21	35593826	35593827	rs28451064	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	21q22.11	KCNE2	rs28451064-A	0.12	6E-12		1.13	[1.09-1.17]	Affymetrix, Illumina [8600000] (imputed)	N
856	chr21	35593826	35593827	rs28451064	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	21q22.11	KCNE2	rs28451064-A	0.121186	1E-15		1.14	[1.10- 1.17]	Affymetrix, Illumina [8600000] (imputed)	N
856	chr21	35595636	35595637	rs55706246	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	21q22.11	LINC00310	rs55706246-A	NR	1E-8	(All)	0.28	[-0.0728-0.6328] unit increase	Illumina [6900000] (imputed)	N
856	chr21	35595636	35595637	rs55706246	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	21q22.11	LINC00310	rs55706246-A		5E-6	(All, AA)	0.45	[0.26-0.64] unit increase	Illumina [6900000] (imputed)	N
856	chr21	35595636	35595637	rs55706246	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Percentage gas trapping	3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases,  3,062 European ancestry controls, 2,132 African American controls	NA	21q22.11	LINC00310	rs55706246-A		3E-7	(Cases, AA)			Illumina [6900000] (imputed)	N
856	chr21	35595820	35595821	rs9305545	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	21q22.11	NR	rs9305545-G	0.17	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix [2446094] (imputed)	N
856	chr21	35595820	35595821	rs9305545	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	21q22.11	NR	rs9305545-G	0.17	5E-8				Affymetrix [2446094] (imputed)	N
856	chr21	35596841	35596842	rs9976596	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	21q22.11	AP000320.7, AP000318.2	rs9976596-T	0.8435	2E-14		0.1868	[0.14-0.23] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
856	chr21	35599127	35599128	rs9982601	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	21q22.11		rs9982601-T	0.1312	4E-15		0.17944713	[0.13-0.22] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
856	chr21	35599127	35599128	rs9982601	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	21q22.11	NR	rs9982601-?	NR	3E-17				NR [up to 7000000]	N
856	chr21	35599127	35599128	rs9982601	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	21q22.11	KCNE2	rs9982601-T	0.16	2E-13		1.38	[NR]	Affymetrix [537798]	N
856	chr21	35599127	35599128	rs9982601	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	21q22.11	KCNE2	rs9982601-T	NR	3E-10		1.18	[1.12-1.24]	Illumina [575000] (imputed)	N
856	chr21	35599127	35599128	rs9982601	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	21q22.11	MRPS6	rs9982601-T	0.15	4E-10		1.18	[1.12-1.24]	Affymetrix, Illumina [~ 2300000] (imputed)	N
856	chr21	35599127	35599128	rs9982601	19198609	Kathiresan S	2009-02-08	Nat Genet	Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.	Myocardial infarction (early onset)	2,967 European ancestry cases, 3,075 European ancestry controls	9,746 European ancestry cases, 9,746 European ancestry controls	21q22.11	SLC5A3, KCNE2, MRPS6	rs9982601-T	0.13	6E-11		1.2	[1.14-1.27]	Affymetrix [~ 2500000] (imputed)	N
856	chr21	35605862	35605863	rs149487184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.11		rs149487184-?	NR	3E-9				NR [~ 8900000] (imputed)	N
856	chr21	35605862	35605863	rs149487184	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	21q22.11	intergenic	rs149487184-T	0.023	9E-6		0.101	[0.056-0.146] unit increase	Affymetrix [7947838] (imputed)	N
856	chr21	35614757	35614758	rs73203250	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	21q22.11	NR	rs73203250-C	0.063	2E-6	(Jaccard metric)	4.586384	NR z-score increase	Illumina [5293637] (imputed)	N
856	chr21	35628877	35628878	rs2834425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.11	AP000320.7, AP000318.2	rs2834425-G	NR	3E-9		0.019402	[0.013-0.026] unit increase	Affymetrix [321788] (imputed)	N
857	chr21	35652238	35652239	rs9978142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.11	AP000320.7, AP000318.2	rs9978142-T	NR	6E-9		0.0241294	[0.016-0.032] unit increase	Affymetrix [321788] (imputed)	N
857	chr21	35652238	35652239	rs9978142	29394082	Burkart KM	2018-02-02	Am J Respir Crit Care Med	A Genome-wide Association Study in Hispanics/Latinos Identifies Novel Signals for Lung Function. The Hispanic Community Health Study/Study of Latinos.	Lung function (FEV1/FVC)	11,822 Hispanic individuals	up to 4,162 Hispanic individuals, up to 876 African American individuals, up to 94,612 European ancestry individuals	21q22.11	Intergenic	rs9978142-T		4E-7		0.11	[NR] unit decrease	Illumina [2232944] (imputed)	N
857	chr21	35652238	35652239	rs9978142	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	21q22.11	KCNE2	rs9978142-T	0.16	3E-8	(FEV1/FVC)	0.043	[0.027-0.059] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
857	chr21	35653669	35653670	rs762158	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.11	AP000320.7, AP000318.2	rs762158-G	NR	1E-8		0.0188766	[0.012-0.025] unit increase	Affymetrix [321788] (imputed)	N
857	chr21	35653669	35653670	rs762158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q22.11		rs762158-?	NR	7E-25				NR [~ 8900000] (imputed)	N
857	chr21	35655733	35655734	rs7277800	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	21q22.11	LINC00310, KCNE2	rs7277800-?	NR	1E-16		0.0517846	[0.04-0.064] unit increase	Illumina [4804024] (imputed)	N
857	chr21	35661744	35661745	rs2096468	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	21q22.11	KCNE2	rs2096468-A	0.45	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
857	chr21	35666960	35666961	rs7279974	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	21q22.11	SLC5A3, KCNE2	rs7279974-C	0.26	1E-10		1.06	[1.04-1.09]	Illumina [5167567] (imputed)	N
857	chr21	35675965	35675966	rs62213732	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	21q22.11	KCNE2	rs62213732-T	0.6317	9E-24		0.0246	[0.02-0.029] unit increase	Affymetrix [19819130] (imputed)	N
857	chr21	35684259	35684260	rs1041733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q22.11		rs1041733-?	NR	2E-10				NR [~ 8900000] (imputed)	N
857	chr21	35690498	35690499	rs2834440	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.		KCNE2	rs2834440-A	0.6159	2E-7		0.036	[0.022-0.05] unit increase	Affymetrix [27624732] (imputed)	N
857	chr21	35690785	35690786	rs2834442	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	21q22.11	KCNE2	rs2834442-A	0.65	5E-12		0.026	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
857	chr21	35698389	35698390	rs1013063	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Body mass index  (smoking years interaction)	8,203 African American females, 3,484 Hispanic females	NA	21q22.11	KCNE2, LOC100130240	rs1013063-T	0.38	5E-6	(Hispanic)	0.08	[0.04-0.11] unit decrease	Affymetrix [706791]	N
857	chr21	35700655	35700656	rs7282784	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.11	NR	rs7282784-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
857	chr21	35708579	35708580	rs7282733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	21q22.11		rs7282733-T	0.416467	2E-8		0.0117011	[0.0076-0.0158] unit increase	Illumina [13479295] (imputed)	N
857	chr21	35708579	35708580	rs7282733	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.11	LINC00310, KCNE2	rs7282733-?	NR	4E-10		0.01837789	[0.013-0.024] unit increase	Illumina [27896057] (imputed)	N
857	chr21	35708579	35708580	rs7282733	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	21q22.11	AP000320.7	rs7282733-T	0.5545	1E-7		0.0339	[0.021-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
857	chr21	35712320	35712321	rs12626741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q22.11		rs12626741-T	NR	7E-31		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
857	chr21	35713783	35713784	rs6517225	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.11	AP000320.7	rs6517225-A	NR	2E-10		0.0189523	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
857	chr21	35714543	35714544	rs1467847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.11		rs1467847-?	NR	8E-40				NR [~ 8900000] (imputed)	N
857	chr21	35714543	35714544	rs1467847	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	21q22.11	MRPS6, KCNE2	rs1467847-?	NR	2E-9		0.066	[0.044-0.088] unit increase	Illumina [12039492] (imputed)	N
857	chr21	35716642	35716643	rs74758196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.11		rs74758196-?	NR	8E-11				NR [~ 8900000] (imputed)	N
857	chr21	35717836	35717837	rs55787537	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.11	KCNE2	rs55787537-T	0.826564	3E-21		0.0237659	[0.019-0.029] unit increase	NR [13737936] (imputed)	N
857	chr21	35717836	35717837	rs55787537	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.11		rs55787537-?	NR	2E-27		0.0277373	[0.022-0.033] unit increase	Affymetrix [20259828] (imputed)	N
857	chr21	35717836	35717837	rs55787537	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.11	KCNE2	rs55787537-T	0.829027	3E-6	(men)	0.0287961	[0.015-0.042] unit increase	NR [17166351] (imputed)	N
857	chr21	35717836	35717837	rs55787537	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.11	KCNE2	rs55787537-T	0.828621	2E-11		0.0304231	[0.022-0.039] unit increase	NR [17166351] (imputed)	N
857	chr21	35717836	35717837	rs55787537	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.11	KCNE2	rs55787537-T	0.828266	6E-7	(women)	0.0306365	[0.019-0.043] unit increase	NR [17166351] (imputed)	N
857	chr21	35722362	35722363	rs115474490	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	21q22.11	NR	rs115474490-A	0.908	7E-7		0.9621	[0.58-1.34] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	8E-13	(226 ms)	0.111549	[0.08-0.143] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	8E-12	(206 ms)	0.108853	[0.078-0.14] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	8E-12	(204 ms)	0.106826	[0.076-0.138] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	7E-12	(232 ms)	0.1071	[0.076-0.138] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	6E-9	(330 ms)	0.0900978	[0.059-0.122] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	6E-12	(230 ms)	0.107432	[0.076-0.139] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	6E-12	(224 ms)	0.108142	[0.077-0.139] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	6E-12	(214 ms)	0.108403	[0.077-0.14] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	5E-8	(244 ms)	0.0866652	[0.055-0.118] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	5E-12	(216 ms)	0.108901	[0.078-0.14] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	5E-12	(208 ms)	0.110589	[0.079-0.142] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	4E-9	(242 ms)	0.0914634	[0.06-0.123] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	4E-8	(352 ms)	0.0883388	[0.057-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	3E-12	(220 ms)	0.109643	[0.078-0.141] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	3E-11	(234 ms)	0.105731	[0.074-0.137] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	3E-11	(222 ms)	0.106945	[0.076-0.138] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-8	(344 ms)	0.0873783	[0.056-0.119] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-8	(338 ms)	0.0896942	[0.058-0.121] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-8	(336 ms)	0.0888158	[0.057-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-8	(332 ms)	0.0867195	[0.055-0.118] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-12	(218 ms)	0.110981	[0.08-0.142] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-11	(200 ms)	0.105917	[0.075-0.137] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	2E-10	(236 ms)	0.0993206	[0.068-0.131] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-9	(240 ms)	0.0950301	[0.064-0.126] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-9	(238 ms)	0.0950386	[0.064-0.126] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-12	(228 ms)	0.110863	[0.08-0.142] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-12	(212 ms)	0.111386	[0.08-0.143] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-12	(210 ms)	0.111689	[0.081-0.143] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs41312993-A	0.968888	1E-11	(202 ms)	0.106501	[0.075-0.138] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35819444	35819445	rs41312993	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during recovery from exercise	51,503 European ancestry individuals	NA	21q22.12		rs41312993-A	0.967	8E-9		0.091	[0.060-0.122] bpm decrease	Affymetrix [9800000] (imputed)	N
858	chr21	35821086	35821087	rs2070356	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.12	C21orf51	rs2070356-?	NR	8E-6	(uric acid)	0.16803779	[0.094-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	21q22.12		rs1805128-C	0.99	3E-23		0.247	[0.2-0.3] unit decrease	Affymetrix [NR]	N
858	chr21	35821679	35821680	rs1805128	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	21q22.12		rs1805128-C	0.99	7E-17		0.213	[0.16-0.26] unit decrease	Affymetrix [NR]	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	9E-22	(296 ms)	0.229639	[0.18-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	8E-27	(328 ms)	0.255302	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	7E-28	(314 ms)	0.260564	[0.21-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	7E-27	(334 ms)	0.25442	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	7E-18	(346 ms)	0.210943	[0.16-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-9	(204 ms)	0.132427	[0.085-0.18] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-30	(322 ms)	0.270853	[0.22-0.32] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-28	(326 ms)	0.260217	[0.21-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-26	(308 ms)	0.250453	[0.2-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-25	(310 ms)	0.246597	[0.2-0.29] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-17	(288 ms)	0.202216	[0.15-0.25] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-14	(358 ms)	0.18374	[0.14-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	6E-10	(212 ms)	0.139727	[0.092-0.187] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-9	(364 ms)	0.143557	[0.096-0.192] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-9	(214 ms)	0.131612	[0.084-0.179] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-9	(208 ms)	0.134281	[0.087-0.182] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-8	(194 ms)	0.122817	[0.076-0.17] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-27	(336 ms)	0.258701	[0.21-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-27	(332 ms)	0.254586	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-19	(292 ms)	0.213076	[0.17-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-12	(360 ms)	0.168778	[0.12-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	5E-10	(278 ms)	0.152233	[0.1-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-8	(216 ms)	0.124535	[0.077-0.172] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-8	(200 ms)	0.125958	[0.079-0.173] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-8	(196 ms)	0.125246	[0.078-0.173] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-29	(320 ms)	0.267936	[0.22-0.32] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-18	(350 ms)	0.212162	[0.16-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-18	(348 ms)	0.21193	[0.16-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-16	(352 ms)	0.198836	[0.15-0.25] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	4E-15	(354 ms)	0.191844	[0.14-0.24] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-9	(206 ms)	0.137298	[0.09-0.185] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-8	(218 ms)	0.128191	[0.081-0.176] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-27	(316 ms)	0.258666	[0.21-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-24	(302 ms)	0.24242	[0.19-0.29] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-22	(342 ms)	0.231744	[0.18-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-20	(344 ms)	0.221495	[0.17-0.27] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-15	(286 ms)	0.193204	[0.15-0.24] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	3E-10	(362 ms)	0.154772	[0.11-0.2] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-8	(366 ms)	0.137474	[0.089-0.185] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-8	(220 ms)	0.130237	[0.083-0.178] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-8	(198 ms)	0.128866	[0.082-0.176] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-29	(324 ms)	0.268318	[0.22-0.32] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-28	(318 ms)	0.26396	[0.22-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-26	(338 ms)	0.255422	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-26	(312 ms)	0.25307	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-25	(304 ms)	0.248179	[0.2-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-24	(340 ms)	0.241465	[0.19-0.29] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-23	(300 ms)	0.238081	[0.19-0.29] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-22	(298 ms)	0.234455	[0.19-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-20	(294 ms)	0.22196	[0.17-0.27] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-12	(282 ms)	0.171893	[0.12-0.22] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	2E-11	(280 ms)	0.164155	[0.12-0.21] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-9	(210 ms)	0.137242	[0.09-0.185] unit increase	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-8	(276 ms)	0.139691	[0.092-0.188] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-26	(330 ms)	0.254013	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-26	(306 ms)	0.253616	[0.21-0.3] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-17	(290 ms)	0.205357	[0.16-0.25] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-14	(356 ms)	0.188582	[0.14-0.24] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	21q22.12	KCNE1	rs1805128-C	0.986705	1E-13	(284 ms)	0.181074	[0.13-0.23] unit decrease	Affymetrix [10000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	21q22.12		rs1805128-C	0.986161	3E-10	(female)	0.200276	[0.14-0.26] bpm decrease	Affymetrix [9800000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	21q22.12		rs1805128-C	0.986161	1E-7	(male)	0.186797	[0.12-0.26] bpm decrease	Affymetrix [9800000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	21q22.12		rs1805128-C	0.986	5E-16		0.182	[0.14-0.23] bpm decrease	Affymetrix [9800000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	32429735	Lahrouchi N	2020-05-20	Circulation	Transethnic Genome-Wide Association Study Provides Insights in the Genetic Architecture and Heritability of Long QT Syndrome.	Long QT syndrome	1,238 European ancestry cases, 8,219 European ancestry controls, 418 Japanese cases, 1,617 Japanese controls	NA	21q22.12	KCNE1	rs1805128-T		5E-7		2.79	[1.67-3.9]	Illumina [NR] (imputed)	N
858	chr21	35821679	35821680	rs1805128	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QT interval	2,332 Erasmus Rucphen Family (founder/genetic isolate) individuals, 24,462 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,225 European ancestry individuals, 2,048 African American individuals	21q22.12	KCNE1	rs1805128-T	0.018	3E-15		7.409	[5.57-9.25] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
858	chr21	35821679	35821680	rs1805128	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	21q22.12	KCNE1	rs1805128-T	0.01	2E-18		7.42	[5.75-9.09] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
858	chr21	35823778	35823779	rs11088283	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	21q22.12	NR	rs11088283-?	NR	1E-6		0.57	[0.53-0.62]	Illumina [539000] (imputed)	N
858	chr21	35828172	35828173	rs12626657	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	21q22.12	KCNE1	rs12626657-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
858	chr21	35828172	35828173	rs12626657	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	21q22.12	KCNE1	rs12626657-?	NR	4E-20	(Hispanic/Latino)	3.122953	[2.46-3.79] unit increase	Illumina [26659972] (imputed)	N
858	chr21	35828172	35828173	rs12626657	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	21q22.12	KCNE1	rs12626657-?	NR	1E-21		3.067	[2.44-3.7] unit increase	Illumina [26659972] (imputed)	N
858	chr21	35828172	35828173	rs12626657	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	21q22.12	KCNE1	rs12626657-A	0.15	1E-17		2.69	[2.08-3.3] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
858	chr21	35880071	35880072	rs727957	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals		KCNE1	rs727957-T	0.19	2E-12	(QT interval)	11.7	[8.46-14.94] % s.d. increase	Illumina [306060]	N
858	chr21	35890957	35890958	rs928760	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	21q22.12		rs928760-T	NR	1E-14		0.0181	[0.014-0.023] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
858	chr21	35890957	35890958	rs928760	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	21q22.12	NR	rs928760-T	0.3027	4E-12		0.001714	[0.0012-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
858	chr21	35911598	35911599	rs2834512	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	21q22.12	RCAN1	rs2834512-G	0.88	4E-6		1.1235955	[1.06-1.18]	Illumina [133816] (imputed)	N
858	chr21	35911598	35911599	rs2834512	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	21q22.12	RCAN1	rs2834512-A	0.88	3E-8		1.1627907	(Immunochip only)	Illumina [129464] (imputed)	N
858	chr21	35911598	35911599	rs2834512	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	21q22.12	RCAN1	rs2834512-?	0.88	4E-7				Illumina [129464] (imputed)	N
859	chr21	35928239	35928240	rs147868091	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.12	RCAN1	rs147868091-T	NR	7E-7		0.105593	[0.051-0.16] unit decrease	Illumina [8380626] (imputed)	N
859	chr21	35928239	35928240	rs147868091	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.12	RCAN1	rs147868091-T	0.12	3E-7	(EA)	0.12623	[0.078-0.174] unit decrease	Illumina [8380626] (imputed)	N
859	chr21	35976542	35976543	rs2284609	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	21q22.12	KCNE1, CLIC6	rs2284609-G	0.05	2E-7		0.56	[0.34-0.78] unit increase	Illumina [8056701] (imputed)	N
859	chr21	36014907	36014908	rs9305556	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	21q22.12	CLIC6	rs9305556-A	0.42012	1E-6		1.1	[1.06-1.14]	Illumina [up to 4778154] (imputed)	N
859	chr21	36023354	36023355	rs1571695	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	21q22.12	CLIC6	rs1571695-A	NR	8E-6		1.99	NR unit increase	Illumina [up to 666531]	N
859	chr21	36039917	36039918	rs114086924	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	21q22.12	NR	rs114086924-G	NR	1E-6	(AA)	0.377809	[0.23-0.53] unit decrease	Affymetrix [up to 6007810] (imputed)	N
860	chr21	36071201	36071202	rs2834591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q22.12		rs2834591-?	NR	4E-15				NR [~ 8900000] (imputed)	N
860	chr21	36083818	36083822	rs776598191	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	21q22.12	CLIC6	rs776598191-T	0.0119	6E-6		0.248	[0.14-0.36] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
860	chr21	36097793	36097794	rs9974620	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	21q22.12	LINC00160	rs9974620-T	NR	9E-7		4.922	NR z score decrease	Illumina [7839440] (imputed)	N
860	chr21	36098644	36098645	rs75286142	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	21q22.12	CLIC6, RUNX1	rs75286142-G	0.1763	2E-9		1.15694	[1.10285-1.21369]	Illumina [4946503] (imputed)	N
860	chr21	36107347	36107348	rs2834613	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q22.12	NR	rs2834613-?	NR	3E-8				Affymetrix [NR]	N
860	chr21	36111200	36111201	rs16992204	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	21q22.12		rs16992204-C	NR	8E-10		1.13	[1.08-1.17]	Affymetrix, Illumina [NR] (imputed)	N
860	chr21	36111200	36111201	rs16992204	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	21q22.12	LOC107985515	rs16992204-?	NR	4E-8		1.1516186	[1.1-1.21]	Illumina [4946503] (imputed)	N
860	chr21	36111200	36111201	rs16992204	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	21q22.12	LINC00160	rs16992204-C	0.12	5E-8		1.13	[1.07-1.18]	Affymetrix, Illumina [668499] (imputed)	N
860	chr21	36115853	36115854	rs2834617	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Esophageal cancer	1,132 Japanese ancestry male cases, 97,655 Japanese ancestry male controls	NA	21q22.12		rs2834617-C	0.01222155	4E-8		3.7493832	[2.338710768-6.010950142]	Illumina [8919992] (imputed)	N
860	chr21	36119094	36119095	rs12483725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	21q22.12		rs12483725-A	NR	7E-9		0.1467	[0.097-0.196] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
860	chr21	36119094	36119095	rs12483725	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	21q22.12		rs12483725-A	0.168742185	2E-9		1.1749938	[1.114850279-1.238381921]	Illumina [8919992] (imputed)	N
860	chr21	36119110	36119111	rs2834618	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	21q22.12	LINC01426	rs2834618-T	0.894	3E-17		1.1	[1.08-1.12]	Illumina [34740186] (imputed)	N
860	chr21	36119110	36119111	rs2834618	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	21q22.12	LOC100506385	rs2834618-T	0.9	5E-16	(EA)	1.11	[1.08-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
860	chr21	36119110	36119111	rs2834618	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	21q22.12	LOC100506385	rs2834618-T	0.9	3E-18		1.12	[1.09-1.14]	Affymetrix, Illumina [up to 12149979] (imputed)	N
860	chr21	36125817	36125818	rs2834629	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis in non-asthmatics	249 European ancestry cases, 164 Latino cases, 248 African American/Afro-Caribbean cases, 674 European ancestry controls, 588 Latino controls, 464 African American/Afro-Caribbean controls	NA	21q22.12	NR	rs2834629-?	0.12	5E-7	(AA)	5.88	[1.16-]	Affymetrix, Illumina [NR] (imputed)	N
860	chr21	36154864	36154865	rs8134546	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	21q22.12	LOC100506385	rs8134546-?	NR	4E-7		0.337	[0.18-0.49] unit decrease	Illumina [at least 13000000] (imputed)	N
860	chr21	36164485	36164486	rs61750222	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	21q22.12	NR	rs61750222-?	NR	2E-8				Illumina [7760689] (imputed)	N
861	chr21	36208061	36208062	rs9976946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	21q22.12		rs9976946-T	NR	1E-9		0.039	[0.026-0.052] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
861	chr21	36208061	36208062	rs9976946	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	21q22.12	RUNX1	rs9976946-?	NR	5E-6	(EA)	5.5	[2.65-11.39]	Illumina [2485249] (imputed)	N
861	chr21	36208166	36208167	rs68088846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	21q22.12		rs68088846-?	NR	1E-48				NR [~ 8900000] (imputed)	N
861	chr21	36208166	36208167	rs68088846	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	21q22.12	NR	rs68088846-A	0.207481	2E-64		0.0648773	[0.057-0.072] unit increase	NR [19129689] (imputed)	N
861	chr21	36208166	36208167	rs68088846	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	21q22.12	RUNX1	rs68088846-G	NR	1E-18		0.151883	[0.12-0.19] unit increase	Affymetrix [27512692] (imputed)	N
861	chr21	36208166	36208167	rs68088846	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.12	RUNX1	rs68088846-A	NR	3E-19		0.0678605	NR unit increase	NR [NR] (imputed)	N
861	chr21	36208166	36208167	rs68088846	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	21q22.12	RUNX1	rs68088846-?	NR	4E-11		1.2077295	[1.14-1.28]	Illumina [13436641] (imputed)	N
861	chr21	36209022	36209023	rs7280071	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	21q22.12		rs7280071-T	0.23	9E-11		0.17	[0.11-0.23] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
861	chr21	36217801	36217802	rs2268282	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	21q22.12	NR	rs2268282-?	NR	2E-6		0.0219	[0.013-0.031] unit increase	Illumina [~ 7800000] (imputed)	N
861	chr21	36227923	36227924	rs115631819	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RUNX1	rs115631819-?	NR	1E-8	(male)	1.8209	[NR] unit increase	Affymetrix [NR] (imputed)	N
861	chr21	36237655	36237656	rs11700925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs11700925-T	0.262704	7E-9		0.014613689	[0.0097-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36237805	36237819	rs67086536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.12	RUNX1	rs67086536-G	0.264582	6E-10		0.015707599	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36238306	36238307	rs35068491	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	21q22.12	NR	rs35068491-C	0.210765	5E-26		0.0402908	[0.033-0.048] unit decrease	NR [19129689] (imputed)	N
861	chr21	36238506	36238507	rs2834655	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs2834655-A	0.282657	7E-9		0.014303086	[0.0095-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36238506	36238507	rs2834655	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	21q22.12	RUNX1	rs2834655-A	0.29	3E-6		0.21	unit decrease	Illumina [5600000] (imputed)	N
861	chr21	36238506	36238507	rs2834655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.12		rs2834655-?	NR	2E-8				NR [~ 8900000] (imputed)	N
861	chr21	36238506	36238507	rs2834655	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.12		rs2834655-?	NR	1E-9				NR [~ 8900000] (imputed)	N
861	chr21	36238506	36238507	rs2834655	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	21q22.12	RUNX1	rs2834655-?		5E-7	(AA)			Illumina [NR]	N
861	chr21	36238516	36238517	rs11701104	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.12	RUNX1	rs11701104-T	NR	9E-9		0.0433979	NR unit decrease	NR [NR] (imputed)	N
861	chr21	36259323	36259324	rs111527738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.12	RUNX1	rs111527738-G	0.020776	2E-12		0.055935685	[0.04-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr21	36280375	36280376	rs2834670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.12	RUNX1	rs2834670-G	0.168589	1E-13		0.025796516	[0.019-0.033] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36280375	36280376	rs2834670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	21q22.12	RUNX1	rs2834670-G	0.168547	3E-11		0.022952337	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36280375	36280376	rs2834670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	21q22.12	NR	rs2834670-G	0.176408	1E-19		0.026935	[0.021-0.033] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
861	chr21	36280375	36280376	rs2834670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs2834670-G	0.186916	4E-18				Affymetrix, Illumina [19905671] (imputed)	N
861	chr21	36280375	36280376	rs2834670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	21q22.12	NR	rs2834670-G	0.17203	2E-18		0.028259	[0.022-0.035] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
861	chr21	36280896	36280897	rs73900579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	21q22.12	RUNX1	rs73900579-C	0.06933	6E-11		0.02853293	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr21	36280896	36280897	rs73900579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.12	RUNX1	rs73900579-C	0.069318	2E-9		0.026032597	[0.018-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
861	chr21	36280896	36280897	rs73900579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs73900579-T	0.919469	1E-11				Affymetrix, Illumina [22063850] (imputed)	N
861	chr21	36280896	36280897	rs73900579	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	21q22.12	NR	rs73900579-T	0.92947	5E-11		0.024697	[0.017-0.032] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
861	chr21	36280896	36280897	rs73900579	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q22.12		rs73900579-?	NR	6E-9				NR [~ 8900000] (imputed)	N
861	chr21	36283810	36283811	rs28567906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs28567906-G	0.08861	3E-12		0.028519407	[0.021-0.037] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36283810	36283811	rs28567906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs28567906-G	0.0886130000000001	6E-14		0.03058429	[0.023-0.039] unit increase	Affymetrix [93095623] (imputed)	N
861	chr21	36283810	36283811	rs28567906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.12	RUNX1	rs28567906-G	0.0883	2E-9		0.03824826	[0.026-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
861	chr21	36283810	36283811	rs28567906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.12	RUNX1	rs28567906-G	0.0883	1E-10		0.04123266	[0.029-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
861	chr21	36283810	36283811	rs28567906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.12	RUNX1	rs28567906-G	0.0882	1E-10		0.04120726	[0.029-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
861	chr21	36283810	36283811	rs28567906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.12	RUNX1	rs28567906-G	0.0883	3E-12		0.04462155	[0.032-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
861	chr21	36291236	36291237	rs11702617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	21q22.12		rs11702617-A	NR	8E-11		0.0227	[0.016-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
861	chr21	36291236	36291237	rs11702617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs11702617-A	0.896836	1E-17				Affymetrix, Illumina [23467995] (imputed)	N
862	chr21	36312346	36312347	rs2834684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs2834684-T	0.348145	1E-12		0.017396389	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36312346	36312347	rs2834684	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs2834684-T	0.348175	2E-13		0.01810744	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36312346	36312347	rs2834684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.12		rs2834684-?	NR	3E-31				NR [~ 8900000] (imputed)	N
862	chr21	36313783	36313784	rs75030518	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	21q22.12	NR	rs75030518-?	NR	2E-7	(Latino)	1.4514	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
862	chr21	36341684	36341685	rs2834705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	21q22.12		rs2834705-C	NR	1E-13		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
862	chr21	36341684	36341685	rs2834705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.12	RUNX1	rs2834705-C	0.337929	5E-15		0.018720338	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36343551	36343552	rs2834707	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.12	RUNX1	rs2834707-T	0.3612	8E-10		0.0151	[0.01-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
862	chr21	36347626	36347627	rs55857134	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	21q22.12	RUNX1	rs55857134-C	0.3353	2E-8		1.17	1.11-1.24	Affymetrix [6845584] (imputed)	N
862	chr21	36350220	36350221	rs2834710	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	21q22.12		rs2834710-T	NR	5E-15		0.0193	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
862	chr21	36350220	36350221	rs2834710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.12	RUNX1	rs2834710-T	0.36746	4E-15		0.018412983	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36350829	36350830	rs2834711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs2834711-G	0.402348	1E-27				Affymetrix, Illumina [24246363] (imputed)	N
862	chr21	36350829	36350830	rs2834711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	21q22.12	NR	rs2834711-G	0.37208	5E-29		0.02114	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
862	chr21	36350829	36350830	rs2834711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs2834711-G	0.404583	8E-22				Affymetrix, Illumina [20825802] (imputed)	N
862	chr21	36350829	36350830	rs2834711	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.12	NR	rs2834711-G	0.371435	1E-23		0.020083	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
862	chr21	36351890	36351891	rs2834712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.12	RUNX1	rs2834712-C	0.374273	1E-10		0.014715038	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
862	chr21	36351890	36351891	rs2834712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.12	RUNX1	rs2834712-C	0.374243	1E-16		0.0203279	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36357860	36357861	rs2014300	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	21q22.12	RUNX1	rs2014300-G	0.843	8E-9		1.28	[1.18-1.39]	Affymetrix, Illumina [7556215] (imputed)	N
862	chr21	36357860	36357861	rs2014300	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	21q22.12	RUNX1	rs2014300-G	0.83	8E-22		1.43	[1.33-1.54]	Affymetrix [666141]	N
862	chr21	36364161	36364162	rs11088302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.12	RUNX1	rs11088302-G	0.471033	2E-15		0.017885864	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36368658	36368659	rs11702779	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	21q22.12		rs11702779-G	0.641	3E-10				Affymetrix [10369434] (imputed)	N
862	chr21	36368658	36368659	rs11702779	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	21q22.12		rs11702779-G	0.641	1E-14				Affymetrix [10369434] (imputed)	N
862	chr21	36368658	36368659	rs11702779	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs11702779-A	0.392825	3E-36				Affymetrix, Illumina [24588908] (imputed)	N
862	chr21	36368658	36368659	rs11702779	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	21q22.12	RUNX1	rs11702779-A	0.3597	3E-10		0.02401558	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36374968	36374969	rs4305348	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	21q22.12		rs4305348-?	NR	5E-14				NR [~ 8900000] (imputed)	N
862	chr21	36379870	36379871	rs11700551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.12	RUNX1	rs11700551-G	0.14989	8E-10		0.021392498	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36381814	36381815	rs2242882	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	21q22.12	RUNX1	rs2242882-T	0.1093	3E-9		5.93	NR z score decrease	Affymetrix, Illumina [9950208] (imputed)	N
862	chr21	36387805	36387806	rs2242886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.12		rs2242886-T	NR	3E-79		0.0637	[0.057-0.07] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
862	chr21	36387805	36387806	rs2242886	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	21q22.12		rs2242886-C	0.929	3E-46				Affymetrix [10369434] (imputed)	N
862	chr21	36387805	36387806	rs2242886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.12	RUNX1	rs2242886-T	0.071099	2E-36		0.055867165	[0.047-0.065] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36387805	36387806	rs2242886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs2242886-T	0.071102	1E-110		0.097428	[0.089-0.106] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36387805	36387806	rs2242886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs2242886-T	0.07112	4E-114		0.09920227	[0.091-0.108] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36387805	36387806	rs2242886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.12		rs2242886-?	NR	5E-135				NR [~ 8900000] (imputed)	N
862	chr21	36389628	36389629	rs2834734	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	21q22.12	RUNX1	rs2834734-G	0.0719	1E-38		0.09036233	[0.077-0.104] unit increase	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36389937	36389938	rs2834735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	21q22.12	RUNX1	rs2834735-C	0.384224	6E-9		0.01352056	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36390940	36390941	rs2834736	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	21q22.12		rs2834736-G	0.666	4E-10				Affymetrix [10369434] (imputed)	N
862	chr21	36392563	36392564	rs71329093	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	21q22.12	RUNX1	rs71329093-A	0.9512	1E-9		6.08	NR z score increase	Affymetrix, Illumina [9950208] (imputed)	N
862	chr21	36392563	36392564	rs71329093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.12	RUNX1	rs71329093-G	0.053739	4E-10		0.03422679	[0.024-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36392563	36392564	rs71329093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.12	RUNX1	rs71329093-G	0.053729	1E-25		0.05270913	[0.043-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36393746	36393747	rs73203043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.12	RUNX1	rs73203043-C	0.071478	2E-27		0.047943786	[0.039-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36395060	36395061	rs11088304	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	21q22.12	NR	rs11088304-G	0.619518	3E-10		0.012554	[0.0087-0.0165] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
862	chr21	36395973	36395974	rs2242892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q22.12	NR	rs2242892-A	0.071107	7E-39		0.04677	[0.04-0.054] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
862	chr21	36398585	36398586	rs56117721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs56117721-A	0.060313	5E-159				Affymetrix, Illumina [19872809] (imputed)	N
862	chr21	36398585	36398586	rs56117721	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.12	NR	rs56117721-A	0.071639	7E-160		0.104406	[0.097-0.112] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
862	chr21	36398585	36398586	rs56117721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.12	RUNX1	rs56117721-A	0.0726	8E-43		0.09488637	[0.081-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36398585	36398586	rs56117721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.12	RUNX1	rs56117721-A	0.0726	7E-57		0.1096916	[0.096-0.123] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36398585	36398586	rs56117721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.12	RUNX1	rs56117721-A	0.0726	1E-50		0.103845	[0.09-0.117] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36398585	36398586	rs56117721	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.12	RUNX1	rs56117721-A	0.0726	2E-56		0.1094342	[0.096-0.123] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36400175	36400176	rs1883067	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.12		rs1883067-?	NR	1E-15				NR [~ 8900000] (imputed)	N
862	chr21	36400440	36400441	rs75967349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	21q22.12	RUNX1	rs75967349-G	0.0499	6E-11		0.05539698	[0.039-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
862	chr21	36404289	36404290	rs4257458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	21q22.12		rs4257458-G	NR	3E-24		0.0212	[0.017-0.025] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
862	chr21	36409831	36409832	rs11700684	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	21q22.12		rs11700684-T	0.927	6E-13				Affymetrix [10369434] (imputed)	N
862	chr21	36414779	36414780	rs11701532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.12	RUNX1	rs11701532-G	0.072109	7E-10		0.0281815	[0.02-0.036] unit increase	Affymetrix [93095623] (imputed)	N
862	chr21	36414779	36414780	rs11701532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.12	RUNX1	rs11701532-G	0.072121	4E-9		0.02615962	[0.017-0.035] unit increase	Affymetrix [93095623] (imputed)	N
862	chr21	36416331	36416332	rs9983044	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid level (eicosapentaenoic acid)	8,866 European ancestry individuals	NA	21q22.12	RUNX1	rs9983044-C	NR	2E-7		0.07	[NR] % increase	Affymetrix, Illumina [NR]	N
862	chr21	36418244	36418245	rs143365361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs143365361-A	0.015173	4E-9		0.05484315	[0.037-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36419782	36419783	rs7277157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs7277157-C	0.178735	6E-15		0.023036456	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36419782	36419783	rs7277157	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs7277157-C	0.178724	4E-14		0.02259412	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36421330	36421331	rs56045941	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	21q22.12	NR	rs56045941-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
862	chr21	36421330	36421331	rs56045941	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	21q22.12	NR	rs56045941-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
862	chr21	36421692	36421693	rs373784744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs373784744-A	0.172739	2E-15		0.02369163	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr21	36423990	36423991	rs17227210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	21q22.12		rs17227210-T	NR	6E-11		0.0867	[0.061-0.113] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
862	chr21	36423990	36423991	rs17227210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.12		rs17227210-?	NR	2E-10				NR [~ 8900000] (imputed)	N
862	chr21	36429039	36429040	rs73203066	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.12	RUNX1	rs73203066-C	0.855933	3E-12		0.0186394	[0.013-0.024] unit decrease	NR [13737936] (imputed)	N
862	chr21	36429039	36429040	rs73203066	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.12		rs73203066-?	NR	4E-12		0.0193783	[0.014-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
862	chr21	36433064	36433065	rs6517271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.12	RUNX1	rs6517271-A	0.677371	6E-16		0.019707583	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
862	chr21	36433064	36433065	rs6517271	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.12	RUNX1	rs6517271-A	0.677356	6E-17		0.02030138	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
862	chr21	36436029	36436030	rs17227231	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.12	RUNX1	rs17227231-C		1E-12		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
862	chr21	36437050	36437051	rs8133101	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.12	RUNX1	rs8133101-T	0.1464	1E-14		0.03875143	[0.029-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
863	chr21	36442464	36442465	rs116262092	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	21q22.12	RUNX1	rs116262092-A	NR	7E-7		0.56	[1.59-2]	Affymetrix, Illumina [~ 16900000] (imputed)	N
863	chr21	36444600	36444600	rs200437269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	21q22.12		rs200437269-CTG	NR	9E-13		0.0245	[0.018-0.031] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
863	chr21	36444600	36444600	rs200437269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.12		rs200437269-CTG	NR	1E-9		0.0195	[0.013-0.026] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
863	chr21	36444600	36444600	rs200437269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.12		rs200437269-CTG	NR	1E-8		0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
863	chr21	36444600	36444600	rs200437269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.12	NR	rs200437269-I	0.112117	3E-12		0.023985	[0.017-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.12	RUNX1	rs8133974-T	0.143799	3E-12		0.021912286	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.12	RUNX1	rs8133974-T	0.143791	3E-12		0.021945015	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.12	RUNX1	rs8133974-T	0.14379	2E-10		0.020097816	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs8133974-T	0.139795	5E-15				Affymetrix, Illumina [24332387] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q22.12	NR	rs8133974-T	0.143499	9E-17		0.021932	[0.017-0.027] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs8133974-T	0.139597	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
863	chr21	36450840	36450841	rs8133974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q22.12	NR	rs8133974-T	0.143328	7E-12		0.017977	[0.013-0.023] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
863	chr21	36450840	36450841	rs8133974	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.12		rs8133974-?	NR	3E-19				NR [~ 8900000] (imputed)	N
863	chr21	36450840	36450841	rs8133974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.12	RUNX1	rs8133974-T	0.1445	6E-13		0.0364156	[0.026-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
863	chr21	36450840	36450841	rs8133974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.12	RUNX1	rs8133974-T	0.1445	2E-11		0.0342184	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
863	chr21	36450840	36450841	rs8133974	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.12	RUNX1	rs8133974-T	0.1445	7E-16		0.04079485	[0.031-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
863	chr21	36452617	36452618	rs8126516	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	21q22.12	RUNX1	rs8126516-A	0.2045	4E-12				Affymetrix [15688218] (imputed)	N
863	chr21	36452617	36452618	rs8126516	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	21q22.12	NR	rs8126516-A	0.1445	1E-9		1.048	[1.033-1.063]	Affymetrix [15688218] (imputed)	N
863	chr21	36452617	36452618	rs8126516	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	21q22.12		rs8126516-?	NR	2E-11				NR [~ 8900000] (imputed)	N
863	chr21	36453836	36453837	rs2242900	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	21q22.12	RUNX1	rs2242900-G	0.14	2E-18				NR [> 9500000] (imputed)	N
863	chr21	36457505	36457506	rs73203093	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	21q22.12		rs73203093-?	NR	7E-9				NR [~ 8900000] (imputed)	N
863	chr21	36464630	36464631	rs11088309	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	21q22.12		rs11088309-G	NR	3E-9		0.0763	[0.051-0.102] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
863	chr21	36464630	36464631	rs11088309	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	21q22.12	RUNX1	rs11088309-G	0.142544346432923	9E-11		0.060457546	[0.042-0.079] unit increase	Affymetrix [35186738] (imputed)	N
863	chr21	36464630	36464631	rs11088309	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	21q22.12	RUNX1	rs11088309-G	0.13703600000000005	5E-16		1.073354	1.05515030762903-1.09187169340547]	NR [9572556] (imputed)	N
863	chr21	36464630	36464631	rs11088309	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	21q22.12	RUNX1, RUNX1-IT1, LOC100506403, LINC01426, LINC00160, CLIC6	rs11088309-G	0.14254	5E-11		1.06024	[1.04-1.08]	Affymetrix [32463443] (imputed)	N
863	chr21	36464630	36464631	rs11088309	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (adult onset)	21,564 British ancestry cases, 318,237 British ancestry controls	NA	21q22.12	RUNX1, SETD4	rs11088309-G	0.143	5E-8		1.079	[1.050-1.109]	Affymetrix [10894596] (imputed)	N
863	chr21	36464630	36464631	rs11088309	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	21q22.12	RUNX1	rs11088309-?	NR	5E-12		1.07	[1.05-1.09]	Affymetrix [9000000] (imputed)	N
863	chr21	36464630	36464631	rs11088309	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	21q22.12	RUNX1	rs11088309-G	NR	2E-15		1.08	[1.06-1.1]	Affymetrix [9000000] (imputed)	N
863	chr21	36467069	36467070	rs2834757	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	21q22.12	NR	rs2834757-?	NR	8E-6				Illumina [at least 7383741] (imputed)	N
863	chr21	36467829	36467830	rs73205303	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs73205303-A	0.151586	2E-14		0.024249615	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
863	chr21	36467829	36467830	rs73205303	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	21q22.12	RUNX1	rs73205303-A	0.13	8E-10		1.044	[1.03-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
863	chr21	36470864	36470865	rs8128234	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	21q22.12	RUNX1	rs8128234-T	0.210674	3E-9		0.06589456	[0.044-0.088] unit increase	Affymetrix [7288503] (imputed)	N
863	chr21	36470864	36470865	rs8128234	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	21q22.12	RUNX1	rs8128234-T	0.197	6E-8		1.13	[1.08-1.18]	Illumina [up to 4778154] (imputed)	N
863	chr21	36470864	36470865	rs8128234	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	21q22.12	RUNX1	rs8128234-T	0.197	4E-8	(EA)	1.17	[1.11-1.23]	Illumina [up to 4778154] (imputed)	N
863	chr21	36476686	36476687	rs117826984	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	21q22.12		rs117826984-T	0.844	2E-15				Affymetrix [10369434] (imputed)	N
863	chr21	36477966	36477967	rs9984968	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	21q22.12	intergenic	rs9984968-A	NR	7E-6				Illumina [up to 11995908] (imputed)	N
863	chr21	36480001	36480002	rs1883063	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	21q22.12	RUNX1	rs1883063-A	0.49	6E-6		32.0	[18.28-45.72] unit decrease	Illumina [6380737] (imputed)	N
863	chr21	36489486	36489487	rs2834778	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs2834778-A	NR	3E-6		2.38		Illumina [2711511] (imputed)	N
863	chr21	36489810	36489811	rs9977375	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs9977375-G	NR	3E-6		2.37		Illumina [2711511] (imputed)	N
863	chr21	36496132	36496133	rs9808623	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs9808623-T	NR	3E-6		2.36		Illumina [2711511] (imputed)	N
863	chr21	36496316	36496317	rs2409587	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs2409587-T	NR	3E-6		2.36		Illumina [2711511] (imputed)	N
863	chr21	36496397	36496398	rs2409588	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs2409588-T	NR	3E-6		2.36		Illumina [2711511] (imputed)	N
863	chr21	36496837	36496838	rs2094870	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs2094870-C	NR	4E-6		2.36		Illumina [2711511] (imputed)	N
863	chr21	36498783	36498784	rs9983537	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs9983537-T	NR	5E-6		2.34		Illumina [2711511] (imputed)	N
863	chr21	36502557	36502558	rs2834787	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs2834787-G	0.153922	2E-13		0.022791006	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
863	chr21	36502557	36502558	rs2834787	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	21q22.12	NR	rs2834787-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
863	chr21	36502557	36502558	rs2834787	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	21q22.12	RUNX1	rs2834787-G	0.153458	2E-11		1.057204	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
863	chr21	36504431	36504432	rs2834789	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	21q22.12	Intergenic	rs2834789-C	NR	2E-6		2.4		Illumina [2711511] (imputed)	N
863	chr21	36533661	36533662	rs2834812	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	21q22.12	NR	rs2834812-?	NR	9E-6	(progression)			Illumina [NR]	N
863	chr21	36561597	36561598	rs12483023	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.12	NR	rs12483023-G	0.1864	1E-8	(FMO5)	0.07839	NR unit increase	Illumina [1671387] (imputed)	N
863	chr21	36564708	36564709	rs8132680	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.12	RUNX1	rs8132680-T	0.764639	3E-12		0.0154366	[0.011-0.02] unit decrease	NR [13737936] (imputed)	N
863	chr21	36565277	36565278	rs7281587	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	21q22.12	RUNX1	rs7281587-A	0.247	1E-13		0.144	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
864	chr21	36576498	36576499	rs2834839	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.12		rs2834839-?	NR	1E-11				NR [~ 8900000] (imputed)	N
864	chr21	36612240	36612241	rs74848904	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q22.12	RUNX1	rs74848904-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
864	chr21	36666245	36666245	rs397774249	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	21q22.12	RUNX1	rs397774249-G	0.5741	1E-6		0.034	[0.02-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
864	chr21	36688527	36688528	rs2834902	22969067	Mishra A	2012-09-13	Invest Ophthalmol Vis Sci	Genetic variants near PDGFRA are associated with corneal curvature in Australians.	Corneal curvature	1,788 European ancestry twins and family members, 1,013 European ancestry unrelated individuals	NA	21q22.12	intergenic	rs2834902-A	NR	8E-6		0.0359	[0.020-0.052] mm increase	Illumina [1704858] (imputed)	N
865	chr21	36712587	36712588	rs8129030	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	21q22.12	LOC100506403, RUNX1, RUNX1-IT1, MIR802, LINC01426, LINC00160	rs8129030-A	0.63199	1E-8		1.03808	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
865	chr21	36712587	36712588	rs8129030	30888730	Hsu YH	2019-03-19	J Bone Miner Res	Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.	Femoral neck length	18,719 individuals	8,334 individuals	21q22.12	RUNX1	rs8129030-?		2E-6		4.732	NR z score decrease	Affymetrix, Illumina [up to 2622085] (imputed)	N
865	chr21	36712587	36712588	rs8129030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.12	RUNX1	rs8129030-A	0.6309	1E-14		0.02854888	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36712587	36712588	rs8129030	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.12	RUNX1	rs8129030-A	0.631	2E-13		0.02728633	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36712587	36712588	rs8129030	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	21q22.12	RUNX1	rs8129030-?	0.63	5E-9	(dominant model)	1.2820514	[1.19-1.41]	Illumina [123003]	N
865	chr21	36714980	36714986	rs66922517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs66922517-T	0.629788	1E-43		0.031912137	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
865	chr21	36714986	36714992	rs572177190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	21q22.12		rs572177190-T	NR	5E-13		0.0516	[0.038-0.066] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
865	chr21	36715760	36715761	rs9979383	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	21q22.12		rs9979383-C	0.37	1E-17				Affymetrix [10369434] (imputed)	N
865	chr21	36715760	36715761	rs9979383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.12	RUNX1	rs9979383-T	0.629571	1E-40		0.030658972	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
865	chr21	36715760	36715761	rs9979383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	21q22.12		rs9979383-?	NR	1E-8				NR [~ 8900000] (imputed)	N
865	chr21	36715760	36715761	rs9979383	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.12		rs9979383-?	NR	2E-52				NR [~ 8900000] (imputed)	N
865	chr21	36715760	36715761	rs9979383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.12	RUNX1	rs9979383-T	0.6285	7E-12		0.02547299	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36715760	36715761	rs9979383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	21q22.12	RUNX1	rs9979383-T	0.6285	1E-11		0.02528352	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36715760	36715761	rs9979383	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.12	RUNX1	rs9979383-T	0.6285	2E-13		0.027243	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36715760	36715761	rs9979383	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	21q22.12	RUNX1, LOC100506403	rs9979383-?	NR	1E-8		0.92		Illumina [109572]	N
865	chr21	36715760	36715761	rs9979383	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	21q22.12	RUNX1	rs9979383-A	0.63	4E-8		1.0869565	[1.06-1.12]	Illumina [133816] (imputed)	N
865	chr21	36715760	36715761	rs9979383	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	21q22.12	RUNX1	rs9979383-?	NR	4E-8				Illumina [129464] (imputed)	N
865	chr21	36715760	36715761	rs9979383	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	21q22.12	RUNX1	rs9979383-?	0.64	5E-10		1.1111112		Illumina [129464] (imputed)	N
865	chr21	36738241	36738242	rs8133843	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	21q22.12		rs8133843-A	NR	9E-11		1.08	[1.06-1.11]	NR [13810676] (imputed)	N
865	chr21	36738241	36738242	rs8133843	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.12	RUNX1, LOC100506403	rs8133843-A	NR	1E-9		0.0848539	[0.057-0.113] unit increase	Illumina [8380626] (imputed)	N
865	chr21	36738241	36738242	rs8133843	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.12	RUNX1, LOC100506403	rs8133843-A	0.62	6E-9	(EA)	0.09493	[0.063-0.127] unit increase	Illumina [8380626] (imputed)	N
865	chr21	36738241	36738242	rs8133843	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.12	RUNX1, LOC100506403	rs8133843-A	0.62	2E-8	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
865	chr21	36738241	36738242	rs8133843	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.12	RUNX1, LOC100506403	rs8133843-A	0.59	3E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
865	chr21	36743729	36743730	rs56897391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.12	RUNX1	rs56897391-T	NR	4E-8		0.0207902	[0.013-0.028] unit decrease	Affymetrix [321788] (imputed)	N
865	chr21	36743729	36743730	rs56897391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	21q22.12	RUNX1	rs56897391-T	NR	3E-8		0.0227789	[0.015-0.031] unit decrease	Affymetrix [323858] (imputed)	N
865	chr21	36748496	36748497	rs4507181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.12	NR	rs4507181-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
865	chr21	36770119	36770120	rs73197345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.12	RUNX1	rs73197345-A	NR	1E-8		0.0245234	[0.016-0.033] unit decrease	Affymetrix [321788] (imputed)	N
865	chr21	36770119	36770120	rs73197345	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	21q22.12	RUNX1	rs73197345-A	NR	7E-10		0.0286847	[0.02-0.038] unit decrease	Affymetrix [323858] (imputed)	N
865	chr21	36770119	36770120	rs73197345	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q22.12	RUNX1	rs73197345-A	0.1367	4E-14		0.0211	[0.016-0.027] unit increase	Affymetrix [18391927] (imputed)	N
865	chr21	36770119	36770120	rs73197345	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.12	NR	rs73197345-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
865	chr21	36770188	36770189	rs73197346	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q22.12		rs73197346-?	NR	2E-9				NR [~ 8900000] (imputed)	N
865	chr21	36770188	36770189	rs73197346	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	21q22.12	Intergenic	rs73197346-C	0.14	3E-10	(hip shape mode 1)	0.11	[0.077-0.143] unit decrease	Illumina [7191926] (imputed)	N
865	chr21	36789419	36789420	rs138595256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	21q22.12	RUNX1	rs138595256-G	0.025286	3E-10		0.047225703	[0.033-0.062] unit increase	Affymetrix [93095623] (imputed)	N
865	chr21	36789419	36789420	rs138595256	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	21q22.12	RUNX1	rs138595256-G	0.025286	4E-10		0.046737887	[0.032-0.061] unit increase	Affymetrix [93095623] (imputed)	N
865	chr21	36789419	36789420	rs138595256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.12	NR	rs138595256-G	0.0248653	1E-18				Affymetrix, Illumina [19905671] (imputed)	N
865	chr21	36789419	36789420	rs138595256	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	21q22.12	NR	rs138595256-G	0.025574	2E-20		0.064177	[0.051-0.078] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
865	chr21	36792623	36792624	rs150498232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	21q22.12	RUNX1	rs150498232-G	0.0259	3E-14		0.09096069	[0.068-0.114] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36792623	36792624	rs150498232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	21q22.12	RUNX1	rs150498232-G	0.0259	3E-18		0.1032011	[0.08-0.126] unit increase	Affymetrix [~ 2500000] (imputed)	N
865	chr21	36792623	36792624	rs150498232	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	21q22.12	RUNX1	rs150498232-G	0.0259	2E-17		0.1018486	[0.078-0.125] unit increase	Affymetrix [~ 2500000] (imputed)	N
866	chr21	36849418	36849419	rs16993221	22788528	Kong M	2012-07-13	Int J Immunogenet	Genetic associations with C-reactive protein level and white blood cell count in the KARE study.	C-reactive protein and white blood cell count	8,722 individuals	NA	21q22.12	LOC100506403	rs16993221-A	0.034	2E-8	(WBC)	0.455	[NR] 10^3/ul decrease	Affymetrix [1701735] (imputed)	N
866	chr21	36855804	36855805	rs9978276	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.12	SETD4	rs9978276-?	NR	7E-6	(CE 18:2)	0.56189245	[0.32-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
866	chr21	36874437	36874438	rs7277882	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.12		rs7277882-?	NR	4E-19		0.0185186	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
866	chr21	36881430	36881431	rs9984655	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.12	LOC100506403	rs9984655-C	0.564522	4E-11		0.0130201	[0.0092-0.0169] unit increase	NR [13737936] (imputed)	N
866	chr21	36921258	36921259	rs2834963	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	21q22.12	LOC100506403	rs2834963-C	0.638523	2E-15		0.00194455	[0.0015-0.0024] unit increase	Affymetrix [13995440] (imputed)	N
866	chr21	36925329	36925331	rs35574839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.12	RUNX1	rs35574839-GAA	0.473554	3E-9		0.013573289	[0.0091-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr21	36970349	36970350	rs9976876	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.12	LOC100506403	rs9976876-G	0.517457	2E-13		0.0143743	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
867	chr21	36970349	36970350	rs9976876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.12		rs9976876-?	NR	2E-22				NR [~ 8900000] (imputed)	N
867	chr21	36970349	36970350	rs9976876	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q22.12	NR	rs9976876-T	0.4559	1E-9	(European)	0.0381	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
867	chr21	36970349	36970350	rs9976876	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q22.12	NR	rs9976876-T	0.447	8E-11		0.0375	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
867	chr21	36972694	36972695	rs2835028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	21q22.12		rs2835028-A	0.588103	5E-9		0.0236974	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
867	chr21	36979438	36979439	rs55790304	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.12	NR	rs55790304-C	0.01394	2E-8	(SNRPD3)	0.04662	NR unit increase	Illumina [1671387] (imputed)	N
867	chr21	36983188	36983189	rs2835036	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.12	CBR1	rs2835036-?	NR	8E-7	(tauro deoxycholate)	0.63596576	[0.38-0.89] unit decrease	Affymetrix [at least 2500000] (imputed)	N
867	chr21	37013620	37013621	rs12483148	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.12	SETD4	rs12483148-G	0.038	5E-6	(DBP )	0.03	[NR] mmHg increase	Illumina [899892]	N
867	chr21	37071132	37071133	rs117153847	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RUNX1	rs117153847-?	NR	2E-9	(female)	2.16805	[NR] unit increase	Affymetrix [NR] (imputed)	N
868	chr21	37111437	37111438	rs2835112	28394258	Wild PS	2017-04-10	J Clin Invest	Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function.	Left ventricle wall thickness	30,201 European ancestry individuals	NA	21q22.12	NR	rs2835112-T	0.036	8E-6		0.0256	[0.014-0.037] unit decrease	Affymetrix, Illumina [at least 283291] (imputed)	N
868	chr21	37155660	37155661	rs433074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.12		rs433074-?	NR	4E-12				NR [~ 8900000] (imputed)	N
868	chr21	37159621	37159622	rs71330619	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.12	MIR802	rs71330619-A	0.95474	2E-10		0.0285903	[0.02-0.037] unit decrease	NR [13737936] (imputed)	N
868	chr21	37168626	37168627	rs9976429	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.12	CBR1	rs9976429-?	NR	9E-6	(3-hydroxyphenylacetic acid)	0.53310037	[0.3-0.77] unit increase	Affymetrix [at least 2500000] (imputed)	N
868	chr21	37174161	37174162	rs117440128	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	21q22.12	RUNX1	rs117440128-A	0.015	9E-7	(adjusted for severity)	2.94	[2.51-3.37]	Affymetrix, Illumina [~ 8500000] (imputed)	N
869	chr21	37282826	37282827	rs119491	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	21q22.12		rs119491-G	NR	2E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
869	chr21	37338017	37338018	rs2850066	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	504 European ancestry high cardiovascular risk non-diabetic elderly individuals	NA	21q22.12	LOC101928269	rs2850066-G	0.273	4E-8		0.189	[NR] unit decrease	Illumina [625127]	N
870	chr21	37421622	37421623	rs57716069	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.12	CBR1	rs57716069-C	0.97671875	2E-24	(CBR1, 12381_26_3)	0.80431956	[0.65-0.96] unit increase	Illumina [> 1000000] (imputed)	N
870	chr21	37435575	37435576	rs7283305	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBR1	5,368 Icelandic ancestry individuals	NA	21q22.12		rs7283305-C	0.02405	3E-40		0.792374	[0.68-0.91] unit decrease	Illumina [7506463] (imputed)	N
870	chr21	37438888	37438889	rs73370485	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	21q22.12	NR	rs73370485-G	NR	4E-18		0.0714	[0.055-0.087] unit increase	Affymetrix [9000000] (imputed)	N
870	chr21	37440764	37440765	rs41555214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	21q22.12	NR	rs41555214-T	NR	6E-12		0.0443	[0.032-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr21	37446451	37446452	rs4239798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	21q22.12		rs4239798-C	NR	1E-11		0.0183	[0.013-0.024] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
870	chr21	37446598	37446599	rs16993864	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.12	CBR1	rs16993864-A	0.022	7E-49	(Carbonyl reductase [NADPH] 1, CBR1.12381.26.3)	1.22	[1.06-1.38] unit decrease	Affymetrix [10572788] (imputed)	N
870	chr21	37460270	37460271	rs62229266	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	21q22.12	SETD4, CBR1	rs62229266-T	0.36	1E-8		1.22	[1.14-1.30]	Affymetrix, Illumina [~ 4800000] (imputed)	N
870	chr21	37468222	37468223	rs7280982	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	21q22.12	NR	rs7280982-G	0.779418	2E-12		0.0182657	[0.013-0.023] unit decrease	NR [NR]	N
870	chr21	37474028	37474029	rs9636630	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	21q22.12	NR	rs9636630-G	NR	2E-42		0.0385	[0.033-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr21	37477975	37477976	rs545480577	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.12	NR	rs545480577-G	0.144	4E-46	(Carbonyl reductase [NADPH] 3, CBR3.14091.42.3)	0.56	[0.48-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
870	chr21	37481476	37481477	rs6517329	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	21q22.12	NR	rs6517329-A	NR	8E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
870	chr21	37485061	37485062	rs4817775	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	21q22.12	CBR3	rs4817775-A	0.59	9E-7		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
871	chr21	37501010	37501010	rs768689442	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	21q22.12	NR	rs768689442-T	0.1019	8E-7		1.7232	[1.04-2.41] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
871	chr21	37501010	37501010	rs768689442	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	21q22.12	NR	rs768689442-T	0.1019	8E-7		1.7232	[1.04-2.41] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
871	chr21	37505137	37505138	rs13047406	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.12		rs13047406-?	NR	3E-10				NR [~ 8900000] (imputed)	N
871	chr21	37508437	37508438	rs12483755	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBR3	5,363 Icelandic ancestry individuals	NA	21q22.12		rs12483755-A	0.3112	6E-286		0.656505	[0.62-0.69] unit decrease	Illumina [7506463] (imputed)	N
871	chr21	37513391	37513392	rs60409141	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.12	CBR3	rs60409141-G	0.6884375	3E-160	(CBR3, 14091_42_3)	0.67094934	[0.62-0.72] unit increase	Illumina [> 1000000] (imputed)	N
871	chr21	37529309	37529310	rs11702672	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CBR3	5,363 Icelandic ancestry individuals	NA	21q22.12		rs11702672-A	0.1455	3E-66		0.454254	[0.4-0.51] unit increase	Illumina [7506463] (imputed)	N
871	chr21	37532221	37532222	rs1028997	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.12	CBR3	rs1028997-A	0.376	3E-259	(Carbonyl reductase [NADPH] 3, CBR3.14091.42.3)	0.76	[0.72-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
871	chr21	37546275	37546276	rs113596566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	21q22.12	NR	rs113596566-T	NR	4E-9		0.0582	[0.039-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr21	37553131	37553132	rs11911615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	21q22.12		rs11911615-G	NR	4E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
871	chr21	37553131	37553132	rs11911615	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	21q22.12	NR	rs11911615-T	0.671868	5E-10		0.0127873	[0.0088-0.0168] unit increase	Affymetrix [15000001]	N
872	chr21	37623446	37623447	rs2298450	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	21q22.12	NR	rs2298450-C	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
872	chr21	37633306	37633307	rs41418546	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (joint pain)	251 Japanese ancestry female cases, 5,483 Japanese ancestry female controls	277 Japanese ancestry female cases, 5,337 Japanese ancestry female controls	21q22.12	NR	rs41418546-G	0.174143485	9E-7		0.37595135	[0.23-0.53] unit increase	Affymetrix [536506]	N
872	chr21	37692506	37692507	rs62229372	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.12		rs62229372-?	NR	2E-8				NR [~ 8900000] (imputed)	N
872	chr21	37692506	37692507	rs62229372	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	21q22.12	MORC3	rs62229372-T	0.1269	2E-9		0.1446	[0.098-0.192] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
872	chr21	37702278	37702279	rs4817795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.12		rs4817795-?	NR	8E-10				NR [~ 8900000] (imputed)	N
873	chr21	37750828	37750829	rs113382956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q22.12		rs113382956-C	NR	2E-16		0.0134	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
873	chr21	37750828	37750829	rs113382956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	21q22.12		rs113382956-C	0.509227	1E-8		0.0126838	[0.0083-0.017] unit decrease	Illumina [13479295] (imputed)	N
873	chr21	37750828	37750829	rs113382956	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	21q22.12	NR	rs113382956-C	0.143657	4E-10		0.017241	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
873	chr21	37750828	37750829	rs113382956	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.12	MORC3, CHAF1B	rs113382956-?	NR	4E-9		0.01848777	[0.012-0.025] unit decrease	Illumina [27896057] (imputed)	N
873	chr21	37750828	37750829	rs113382956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.12		rs113382956-?	NR	7E-21				NR [~ 8900000] (imputed)	N
873	chr21	37779489	37779490	rs170144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.13		rs170144-?	NR	5E-8				NR [~ 8900000] (imputed)	N
873	chr21	37781045	37781046	rs75530000	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	21q22.13	CHAF1B	rs75530000-?	NR	3E-10		0.03013	[0.021-0.04] unit increase novel	Illumina [6108953] (imputed)	N
873	chr21	37791465	37791466	rs73204208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	21q22.13		rs73204208-?	NR	2E-13				NR [~ 8900000] (imputed)	N
873	chr21	37791465	37791466	rs73204208	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.13		rs73204208-?	NR	9E-10				NR [~ 8900000] (imputed)	N
873	chr21	37794920	37794921	rs218634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q22.13	NR	rs218634-A	NR	9E-10		0.0213	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
873	chr21	37801433	37801434	rs2835345	23932459	Yao TC	2013-08-06	J Allergy Clin Immunol	Genome-wide association study of lung function phenotypes in a founder population.	Pulmonary function	1,144 Hutterite individuals	NA	21q22.13	CHAF1B	rs2835345-?	NR	8E-6	(FEV1/FVC)			Affymetrix [246010]	N
873	chr21	37804845	37804846	rs172639	27915449	Corre T	2016-12-03	Pflugers Arch	Common variants in CLDN14 are associated with differential excretion of magnesium over calcium in urine.	Urinary electrolytes (magnesium/calcium ratio)	7,498 European ancestry individuals, 1,541 Val Borbera (founder/genetic isolated) individuals, 281 Carlantino (founder/genetic isolated) individuals	NA	21q22.13	CLDN14	rs172639-C	0.4114	2E-12		0.1139	[0.082-0.145] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
873	chr21	37804879	37804880	rs28541768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	21q22.13		rs28541768-G	0.302353	3E-9		0.0185476	[0.012-0.025] unit increase	Illumina [13478778] (imputed)	N
873	chr21	37809376	37809377	rs9984974	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		21q22.13	intergenic	rs9984974-?	0.140	2E-6			[NR]	Affymetrix, Illumina [152234]	N
873	chr21	37814113	37814114	rs2835349	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	21q22.13	AP000695.6	rs2835349-C	0.5448	2E-10		0.02289502	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
873	chr21	37816273	37816274	rs2244033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	21q22.13		rs2244033-C	NR	2E-13		0.0119	[0.0088-0.015] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
873	chr21	37818140	37818141	rs2244237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	21q22.13	CLDN14	rs2244237-T	0.2191	2E-12		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
873	chr21	37818140	37818141	rs2244237	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	21q22.13	CLDN14	rs2244237-T	0.221	7E-12		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
873	chr21	37818870	37818871	rs2776288	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	21q22.13	CLDN14	rs2776288-A	0.63	6E-19		1.18	[1.14-1.22]	Affymetrix [~ 8400000] (imputed)	N
873	chr21	37829507	37829508	rs219787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	21q22.13		rs219787-T	NR	6E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
873	chr21	37832620	37832621	rs219781	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	21q22.13	NR	rs219781-T	0.2632	1E-8		0.001459	[0.00095-0.00196] unit increase	Affymetrix [NR] (imputed)	N
873	chr21	37832620	37832621	rs219781	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	21q22.13	CLDN14	rs219781-T	0.2474	2E-10		0.0267	[0.018-0.035] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
873	chr21	37832620	37832621	rs219781	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	21q22.13	CLDN14	rs219781-T	0.2456	2E-8		0.025151	[0.016-0.034] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
873	chr21	37833306	37833307	rs219780	19561606	Thorleifsson G	2009-06-28	Nat Genet	Sequence variants in the CLDN14 gene associate with kidney stones and bone mineral density.	Kidney stones	1,507 European ancestry cases, 34,033 European ancestry controls	2,266 European ancestry cases, 8,477 European ancestry controls	21q22.13	CLDN14	rs219780-C	0.79	4E-12		1.25	[1.17-1.33]	Illumina [303120]	N
873	chr21	37833750	37833751	rs219779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	21q22.13		rs219779-A	NR	7E-34		0.0312	[0.026-0.036] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
873	chr21	37833750	37833751	rs219779	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	21q22.13	CLDN14	rs219779-G	0.75	9E-22		0.04	[0.034-0.046] unit increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
873	chr21	37834257	37834258	rs128494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	21q22.13		rs128494-C	NR	5E-22		0.0186	[0.015-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
873	chr21	37834257	37834258	rs128494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.13		rs128494-C	NR	2E-31		0.0213	[0.018-0.025] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
873	chr21	37834257	37834258	rs128494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	21q22.13		rs128494-C	0.428615	7E-9		0.0178898	[0.012-0.024] unit increase	Illumina [13478948] (imputed)	N
873	chr21	37834257	37834258	rs128494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.13		rs128494-C	NR	2E-35		0.0233	[0.02-0.027] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.13	AP000695.6, CLDN14, AP000695.4	rs128494-C	0.764735	6E-28		0.028938018	[0.024-0.034] unit increase	Affymetrix [93095623] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.13	AP000695.6, CLDN14, AP000695.4	rs128494-C	0.764759	5E-35		0.03260955	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.13	AP000695.6, CLDN14, AP000695.4	rs128494-C	0.764742	1E-40		0.035246726	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs128494-C	0.689226	5E-42				Affymetrix, Illumina [24332387] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q22.13	NR	rs128494-C	0.762234	9E-38		0.028502	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs128494-C	0.691343	7E-53				Affymetrix, Illumina [24653286] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.13	NR	rs128494-C	0.762143	7E-49		0.03245	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs128494-C	0.692915	6E-61				Affymetrix, Illumina [24558453] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q22.13	NR	rs128494-C	0.76206	8E-55		0.034406	[0.03-0.039] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
873	chr21	37834257	37834258	rs128494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	21q22.13	NR	rs128494-T	0.571696	7E-11		0.024615	[0.017-0.032] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
873	chr21	37834257	37834258	rs128494	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.13	CLDN14	rs128494-T		4E-28		0.028	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
873	chr21	37834257	37834258	rs128494	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	21q22.13	CLDN14	rs128494-C	0.5451	5E-8		5.469	NR z score increase	Illumina [26237160] (imputed)	N
873	chr21	37834257	37834258	rs128494	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.13		rs128494-?	NR	2E-27				NR [~ 8900000] (imputed)	N
873	chr21	37834257	37834258	rs128494	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	21q22.13	CLDN14	rs128494-?	NR	9E-10		0.02306	[0.016-0.03] unit increase novel	Illumina [6108953] (imputed)	N
873	chr21	37834257	37834258	rs128494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q22.13	CLDN14, AP000695.4, AP000695.6	rs128494-C	0.7653	1E-13		0.03162489	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
873	chr21	37834257	37834258	rs128494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	21q22.13	CLDN14, AP000695.4, AP000695.6	rs128494-C	0.7653	2E-16		0.03481525	[0.027-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
873	chr21	37834640	37834641	rs219778	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	21q22.13	NR	rs219778-A	0.74	4E-24		0.0209	[0.017-0.025] unit increase	NR [NR]	N
873	chr21	37834640	37834641	rs219778	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	21q22.13	CLDN14	rs219778-A	0.7406	1E-12		0.0067	[0.0049-0.0085] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
873	chr21	37834720	37834721	rs219777	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	21q22.13		rs219777-A	NR	4E-22		0.0227	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
873	chr21	37835184	37835185	rs34627708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	21q22.13		rs34627708-T	0.420128	9E-11		0.0205837	[0.014-0.027] unit increase	Illumina [13478961] (imputed)	N
873	chr21	37835238	37835240	rs199565725	26272126	Oddsson A	2015-08-14	Nat Commun	Common and rare variants associated with kidney stones and biochemical traits.	Kidney stones	5,149 European ancestry cases, 279,870 European ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	21q22.13	CLDN14	rs199565725-AAC	0.7632	5E-13		1.2345679	[NR]	Illumina [28300000] (imputed)	N
873	chr21	37835981	37835982	rs12626330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	21q22.13		rs12626330-G	NR	6E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
873	chr21	37835981	37835982	rs12626330	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	21q22.13	CLDN14	rs12626330-G	0.49	7E-21		1.15	[1.12-1.18]	Affymetrix, Illumina [~ 5000000] (imputed)	N
873	chr21	37836972	37836973	rs7277076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	21q22.13		rs7277076-C	NR	1E-20		0.107	[0.084-0.13] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
873	chr21	37836972	37836973	rs7277076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	21q22.13		rs7277076-C	0.467553408	3E-11		0.09679802	[0.068-0.125] unit increase	Illumina [13429980] (imputed)	N
873	chr21	37836972	37836973	rs7277076	30975718	Tanikawa C	2019-04-11	J Am Soc Nephrol	Novel Risk Loci Identified in a Genome-Wide Association Study of Urolithiasis in a Japanese Population.	Urolithiasis	11,130 Japanese ancestry cases, 187,639 Japanese ancestry controls	2,289 Japanese ancestry cases, 3,817 Japanese ancestry controls	21q22.13	CLDN14	rs7277076-C	0.471	6E-13		1.1111112	[NR]	Illumina [6603247] (imputed)	N
873	chr21	37836972	37836973	rs7277076	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q22.13	NR	rs7277076-T	0.4293	2E-8	(European)	0.0356	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
873	chr21	37848333	37848334	rs170183	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	21q22.13	CLDN14	rs170183-G	0.53	6E-8	(FNK, female)	1.7	[NR] unit increase	Affymetrix, Illumina [5842825] (imputed)	N
873	chr21	37848333	37848334	rs170183	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	21q22.13	CLDN14	rs170183-G	0.53	4E-9	(hip, female)	1.92	[NR] unit increase	Affymetrix, Illumina [5842825] (imputed)	N
873	chr21	37848333	37848334	rs170183	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	21q22.13	CLDN14	rs170183-G	0.53	2E-7	(hip, female, EA)			Affymetrix, Illumina [5842825] (imputed)	N
874	chr21	37899075	37899076	rs16997926	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	21q22.13	CLDN14	rs16997926-?	NR	2E-6		0.372	[0.22-0.52] unit increase	Illumina [7870334] (imputed)	N
874	chr21	37919150	37919151	rs448332	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.13		rs448332-?	NR	4E-22		0.0310523	[0.024-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
874	chr21	37920376	37920377	rs367166	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.13	CLDN14	rs367166-C	0.0990382	2E-20		0.0289626	[0.023-0.035] unit decrease	NR [13737936] (imputed)	N
874	chr21	37921137	37921138	rs399711	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.13		rs399711-?	NR	2E-19				NR [~ 8900000] (imputed)	N
874	chr21	37922911	37922912	rs78059543	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CLDN14	rs78059543-?	NR	3E-8		1.23878	[NR] unit increase	Affymetrix [NR] (imputed)	N
874	chr21	37935668	37935669	rs9984896	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	21q22.13	NR	rs9984896-A	0.85	5E-6		2.85	[1.63-4.07] unit decrease	Affymetrix, Illumina [2800000] (imputed)	N
874	chr21	37999052	37999053	rs2091854	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	21q22.13		rs2091854-G	0.915	4E-6		0.086	[0.049-0.123] unit decrease	Affymetrix [6030650] (imputed)	N
874	chr21	38007942	38007943	rs6517368	24388013	Ferreira MA	2013-12-30	J Allergy Clin Immunol	Genome-wide association analysis identifies 11 risk variants associated with the asthma with hay fever phenotype.	Asthma and hay fever	6,685 European ancestry cases, 14,091 European ancestry controls	878 European ancestry cases, 2,455 European ancestry controls	21q22.13	SIM2	rs6517368-C		2E-6		1.1201	[1.07-1.17]	Illumina [up to 4972397] (imputed)	N
875	chr21	38011675	38011676	rs8131065	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	21q22.13	intergenic	rs8131065-T	0.21462	5E-6		0.418525	[0.24-0.59] unit decrease	Illumina [at least 520076] (imputed)	N
875	chr21	38030576	38030577	rs192955819	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x traumatic event in childhood (felt hated by family member) interaction	46,394 European ancestry individuals	NA	21q22.13		rs192955819-?	NR	5E-8		4.2186	[2.7-5.73] unit increase	Affymetrix [NR] (imputed)	N
875	chr21	38041974	38041975	rs56016578	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	21q22.13		rs56016578-T	0.013197	4E-7		2.358752	NR	Affymetrix [7846216] (imputed)	N
875	chr21	38042538	38042539	rs2835424	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.13	AP000697.6	rs2835424-A	NR	6E-10		0.0183441	[0.013-0.024] unit decrease	Affymetrix [321788] (imputed)	N
875	chr21	38055215	38055216	rs2835435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.13		rs2835435-T	0.222334	3E-26		0.028626349	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr21	38055215	38055216	rs2835435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.13		rs2835435-T	0.222338	6E-22		0.027143074	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr21	38055215	38055216	rs2835435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.13		rs2835435-T	0.222335	4E-24		0.028563255	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr21	38055215	38055216	rs2835435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.13		rs2835435-?	NR	2E-29				NR [~ 8900000] (imputed)	N
875	chr21	38066882	38066883	rs2212926	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q22.13	SIM2	rs2212926-A	0.2106	8E-21		0.022	[0.017-0.027] unit decrease	Affymetrix [18391927] (imputed)	N
875	chr21	38069257	38069258	rs1693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	21q22.13	AP000697.6	rs1693-A	NR	1E-8		0.0167828	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
875	chr21	38071987	38071988	rs116948941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.13	SIM2	rs116948941-G	0.217007	1E-9		0.017152524	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
875	chr21	38071987	38071988	rs116948941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.13	SIM2	rs116948941-G	0.217001	2E-10		0.017945154	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
875	chr21	38072355	38072356	rs2269188	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.13	SIM2	rs2269188-C		2E-21		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
875	chr21	38072355	38072356	rs2269188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	21q22.13	SIM2, AP000697.6	rs2269188-C	0.2783	2E-11		0.02755984	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr21	38072355	38072356	rs2269188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q22.13	SIM2, AP000697.6	rs2269188-C	0.2783	2E-11		0.02768442	[0.02-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr21	38072355	38072356	rs2269188	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	21q22.13	SIM2, AP000697.6	rs2269188-C	0.2783	7E-13		0.02935934	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
875	chr21	38091530	38091531	rs732638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.13		rs732638-?	NR	4E-12				NR [~ 8900000] (imputed)	N
875	chr21	38117504	38117505	rs2073602	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q22.13	SIM2	rs2073602-?		9E-6				Illumina [4322238] (imputed)	N
876	chr21	38151253	38151254	rs111610752	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	21q22.13	HLCS	rs111610752-?		5E-7	(French Canadians)	3.2983596		Illumina [7614484] (imputed)	N
876	chr21	38156985	38156986	rs115593871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.13	HLCS	rs115593871-A	0.067413	3E-10		0.028004803	[0.019-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr21	38160162	38160163	rs3787751	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	21q22.13	HLCS	rs3787751-C	0.45	5E-7		0.07	[NR] unit decrease	Illumina [223580]	N
876	chr21	38160162	38160163	rs3787751	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	21q22.13	HLCS	rs3787751-?	0.448	2E-7	(Well-formedness)	0.385	[0.24-0.53] unit decrease	Illumina [223580]	N
876	chr21	38160162	38160163	rs3787751	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder	149 isolated population cases, 210 isolated population controls	NA	21q22.13	HLCS	rs3787751-C	0.05	5E-6		0.07	[NR] unit decrease	Illumina [223580]	N
876	chr21	38168445	38168446	rs12481910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.13	HLCS	rs12481910-C	0.084939	6E-10		0.024595972	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr21	38168445	38168446	rs12481910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.13	HLCS	rs12481910-C	0.084938	2E-11		0.026735317	[0.019-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr21	38168445	38168446	rs12481910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.13	HLCS	rs12481910-C	0.0849410000000001	2E-14		0.030374661	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr21	38168445	38168446	rs12481910	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.13		rs12481910-?	NR	2E-9				NR [~ 8900000] (imputed)	N
876	chr21	38189678	38189679	rs16994508	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	21q22.13	HLCS, HLCS-IT1, RNA5SP491, SIM2	rs16994508-T	NR	1E-6	(resting duration)	0.7399	[0.44-1.04] unit decrease	Affymetrix [7141204] (imputed)	N
876	chr21	38196104	38196105	rs2835473	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	21q22.13	HLCS	rs2835473-A		4E-6		0.288	[0.16-0.41] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
876	chr21	38237499	38237500	rs2835510	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	21q22.13		rs2835510-G	NR	3E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
877	chr21	38374178	38374179	rs57941717	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	21q22.13	NR	rs57941717-T	0.2528	4E-16		0.2908	[0.22-0.36] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
877	chr21	38384945	38384946	rs11910597	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	21q22.13	NR	rs11910597-?	NR	6E-15				Affymetrix, Illumina [6211246] (imputed)	N
877	chr21	38393566	38393567	rs75518158	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	21q22.13	DSCR6	rs75518158-C	0.0331979999999999	2E-8		0.039915	[0.026-0.054] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
878	chr21	38448024	38448025	rs1155786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.13		rs1155786-?	NR	3E-17				NR [~ 8900000] (imputed)	N
878	chr21	38491094	38491095	rs1003719	20463881	Liu F	2010-05-16	PLoS Genet	Digital quantification of human eye color highlights genetic association of three new loci.	Eye color traits	5,951 European ancestry individuals	3,543 European ancestry individuals	21q22.13	TTC3, DSCR9	rs1003719-A	NR	2E-10	(CHS1)	0.1	[NR] % decrease	Illumina [2543887] (imputed)	N
879	chr21	38593619	38593620	rs13864	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	21q22.13	DSCR9	rs13864-T	0.2871	8E-6		0.1606	[0.09-0.231] unit decrease	NR [NR] (imputed)	N
879	chr21	38660387	38660388	rs9976694	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	21q22.13	NR	rs9976694-A	NR	9E-6		0.009445	[0.0053-0.0136] unit increase	Illumina [~ 540852]	N
880	chr21	38670334	38670335	rs2835692	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	21q22.13	intergenic	rs2835692-?	NR	5E-8		0.68	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
880	chr21	38671417	38671418	rs16994935	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	21q22.13	NR	rs16994935-?	NR	2E-6	(Latino)	0.6174	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
880	chr21	38740279	38740280	rs73203938	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs73203938-T	0.111144	2E-23				Affymetrix, Illumina [19872809] (imputed)	N
880	chr21	38740823	38740824	rs12483205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.13	DYRK1A	rs12483205-G	0.232423	4E-10		0.016332354	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
880	chr21	38740823	38740824	rs12483205	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.13		rs12483205-?	NR	1E-9				NR [~ 8900000] (imputed)	N
880	chr21	38740823	38740824	rs12483205	21364930	Bol SM	2011-02-25	PLoS One	Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages.	HIV-1 replication	191 European ancestry individuals	31 individuals	21q22.13	DYRK1A	rs12483205-?	NR	5E-6				Illumina [494656]	N
880	chr21	38758350	38758351	rs12626319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	21q22.13		rs12626319-C	NR	3E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
880	chr21	38769655	38769656	rs17814633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.13		rs17814633-?	NR	3E-19				NR [~ 8900000] (imputed)	N
880	chr21	38770529	38770530	rs11701722	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	21q22.13	DYRK1A	rs11701722-T		5E-8		0.083	[0.053-0.113] unit decrease	Illumina [NR]	N
880	chr21	38775231	38775232	rs139061363	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - terbinafine (UKB data field 20003_1140927328)	864 European ancestry cases, 455,412 European ancestry controls	NA	21q22.13		rs139061363-C	0.002548	1E-9		3.97	[2.7-5.24] unit increase	NR [11842647] (imputed)	N
880	chr21	38781747	38781748	rs2835718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.13		rs2835718-C	NR	1E-14		0.0209	[0.016-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
880	chr21	38781747	38781748	rs2835718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.13	DYRK1A	rs2835718-C	0.116242	4E-15		0.027149307	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr21	38781747	38781748	rs2835718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.13	DYRK1A	rs2835718-C	0.116242	1E-24		0.03538993	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr21	38781747	38781748	rs2835718	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.13	NR	rs2835718-C	0.116181	7E-26		0.032619	[0.027-0.039] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
880	chr21	38788645	38788646	rs11701269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs11701269-C	0.106037	3E-13				Affymetrix, Illumina [23114412] (imputed)	N
880	chr21	38788645	38788646	rs11701269	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q22.13	NR	rs11701269-C	0.110468	1E-14		0.024566	[0.018-0.031] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
880	chr21	38796727	38796728	rs2835731	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	21q22.13		rs2835731-T	NR	6E-10		0.0226	[0.016-0.03] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
880	chr21	38796727	38796728	rs2835731	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.13		rs2835731-?	NR	2E-16				NR [~ 8900000] (imputed)	N
880	chr21	38796769	38796770	rs59874990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q22.13	DYRK1A	rs59874990-A	0.113988	5E-15		0.027416497	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
880	chr21	38796769	38796770	rs59874990	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q22.13	DYRK1A	rs59874990-A	0.114026	4E-12		0.024365876	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr21	38808427	38808428	rs11702209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	21q22.13	DYRK1A	rs11702209-G	0.118457	2E-11		0.02316007	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr21	38808427	38808428	rs11702209	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	21q22.13	DYRK1A	rs11702209-G	0.118451	3E-19		0.030930871	[0.024-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
881	chr21	38813978	38813979	rs2835742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.13	NR	rs2835742-G	0.0979731	9E-17				Affymetrix, Illumina [24649327] (imputed)	N
881	chr21	38813978	38813979	rs2835742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	21q22.13	NR	rs2835742-G	0.11507	3E-19		0.025927	[0.02-0.032] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
881	chr21	38814171	38814172	rs11702689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	21q22.13		rs11702689-T	NR	8E-11		0.0235	[0.016-0.031] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
881	chr21	38817698	38817699	rs9974713	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	21q22.13	NR	rs9974713-A	NR	5E-6		0.01115	[0.0064-0.0159] unit increase	Illumina [~ 540852]	N
881	chr21	38817811	38817812	rs11700462	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.13	NR	rs11700462-G	0.89698245367811	5E-6	(IGP33)	0.2827	[0.16-0.4] unit decrease	Illumina [~ 2500000] (imputed)	N
881	chr21	38818659	38818660	rs2835750	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q22.13	NR	rs2835750-?	NR	2E-17				Affymetrix [NR]	N
881	chr21	38823570	38823571	rs11088397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.13	DYRK1A	rs11088397-G	0.244596	1E-9		0.016050195	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
881	chr21	38844759	38844760	rs17229402	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q22.13		rs17229402-?	NR	5E-8				NR [NR]	N
881	chr21	38844759	38844760	rs17229402	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q22.13		rs17229402-?	NR	4E-8				NR [NR]	N
881	chr21	38844759	38844760	rs17229402	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	21q22.13		rs17229402-?	NR	2E-8				NR [NR]	N
881	chr21	38845321	38845324	rs35860351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	21q22.13		rs35860351-T	NR	9E-10		0.0141	[0.0096-0.0186] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
881	chr21	38852360	38852361	rs2248244	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	21q22.13	DYRK1A	rs2248244-A	0.2828	3E-11		0.0714	[0.05-0.092] unit increase	NR [7784415] (imputed)	N
881	chr21	38885505	38885506	rs17193211	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.13	NR	rs17193211-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
881	chr21	38885505	38885506	rs17193211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.13		rs17193211-?	NR	9E-9				NR [~ 8900000] (imputed)	N
881	chr21	38885505	38885506	rs17193211	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.13	NA	rs17193211-T	0.0695	2E-9		0.0209	[0.014-0.028] unit decrease	NR [~ 27400000] (imputed)	N
881	chr21	38889752	38889753	rs2236688	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	21q22.13	NR	rs2236688-A	0.707698	3E-11		0.01417	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
881	chr21	38892249	38892250	rs11701836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.13	DYRK1A, AP001421.1	rs11701836-G	0.26517	3E-10		0.01601357	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
881	chr21	38906070	38906071	rs2835788	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	21q22.13	DYRK1A, LOC105372798	rs2835788-?	NR	3E-8		5.559	NR unit decrease	Illumina [up to 1520000] (imputed)	N
881	chr21	38928099	38928100	rs17229494	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	21q22.13	NR	rs17229494-G		5E-6		0.1172	[0.067-0.168] SD units increase	NR [10700000] (imputed)	N
882	chr21	38932777	38932778	rs2835810	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	21q22.13	DYRK1A	rs2835810-?	0.37	6E-6	(WHR)			Illumina [308011]	N
882	chr21	38933887	38933888	rs720470	30383316	Malik R	2018-11-01	Ann Neurol	Genome-Wide Meta-analysis identifies three novel loci associated with stroke.	Stroke	45,570 European ancestry cases, 26,577 cases, 775,530 European ancestry controls, 48,339 controls	NA	21q22.13	DYRK1A	rs720470-T	0.71	6E-9		1.05	[1.03-1.07]	NR [NR]	N
882	chr21	38946528	38946529	rs9974178	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	21q22.13	NR	rs9974178-A	0.57982	3E-8		0.011167	[0.0072-0.0151] unit decrease	NR [NR]	N
882	chr21	39027271	39027272	rs2835872	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	21q22.13	KCNJ6	rs2835872-G	0.681	5E-10		0.145	[NR] unit decrease	Illumina [634583]	N
882	chr21	39038989	39038990	rs1787402	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q22.13		rs1787402-C	0.4	3E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
883	chr21	39092296	39092297	rs857958	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		KCNJ6	rs857958-T	0.17	8E-6		0.11	[0.051-0.169] unit decrease	Illumina [3700000] (imputed)	N
883	chr21	39111439	39111440	rs3787823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	21q22.13	Intergenic	rs3787823-A	0.5487	2E-9	(MTAG)	0.0108	[0.0073-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr21	39111439	39111440	rs3787823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	21q22.13	Intergenic	rs3787823-C	0.4513	2E-9		0.0117	[0.0078-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
883	chr21	39111439	39111440	rs3787823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	21q22.13	Intergenic	rs3787823-A	0.5486	4E-9	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr21	39135486	39135487	rs8132375	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	21q22.13	KCNJ6	rs8132375-C	0.26	9E-6		5.52	NR unit increase	Illumina [NR] (imputed)	N
883	chr21	39188376	39188377	rs2835982	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Vaginal discharge (smell)	367 Japanese ancestry female cases, 5,367 Japanese ancestry female controls	392 Japanese ancestry female cases, 5,222 Japanese ancestry female controls	21q22.13	NR	rs2835982-A	0.317840009	1E-7		0.29058614	[0.18-0.4] unit increase	Affymetrix [536506]	N
883	chr21	39190005	39190006	rs2835985	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q22.13	NR	rs2835985-G	0.489	2E-9		0.00651818	[0.0044-0.0086] unit increase	NR [9732723] (imputed)	N
884	chr21	39198886	39198887	rs2154556	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q22.13	NR	rs2154556-?	NR	5E-6		4.557	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
884	chr21	39236032	39236033	rs2836026	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	DSCR4	rs2836026-?	NR	9E-7	(LPC 18:0)	0.17783532	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
884	chr21	39236032	39236033	rs2836026	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	DSCR4	rs2836026-?	NR	5E-6	(LPC 20:4)	0.16705029	[0.096-0.239] unit decrease	Affymetrix [at least 2500000] (imputed)	N
884	chr21	39236032	39236033	rs2836026	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	DSCR4	rs2836026-?	NR	4E-7	(LPE 22:6)	0.18383269	[0.11-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
884	chr21	39237137	39237138	rs8130408	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	21q22.13	KCNJ6	rs8130408-A	0.255786	2E-8		0.00901268	[0.0058-0.0122] unit decrease	Affymetrix [12370749]	N
884	chr21	39278070	39278071	rs115201696	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	21q22.13	NR	rs115201696-C		7E-6		0.1867	[0.11-0.27] SD units increase	NR [10700000] (imputed)	N
884	chr21	39284636	39284637	rs2836049	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	21q22.13	NR	rs2836049-C		7E-6		0.1896	[0.11-0.27] SD units decrease	NR [10700000] (imputed)	N
884	chr21	39316939	39316940	rs77704860	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	21q22.13	KCNJ6, DSCR4	rs77704860-G	NR	5E-6		0.1033	[0.059-0.148] unit increase	Illumina [at least 950000] (imputed)	N
885	chr21	39363969	39363970	rs62222030	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	21q22.13	DSCR4, KCNJ6	rs62222030-C	0.0746	3E-6		1.41	[1.23-1.59]	Illumina [64973696] (imputed)	N
885	chr21	39407129	39407130	rs7283798	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	21q22.13		rs7283798-?	NR	6E-10				NR [~ 8900000] (imputed)	N
885	chr21	39418783	39418784	rs138188997	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	21q22.13	DSCR4	rs138188997-G	0.028	7E-6		5.882353	[2.7-12.5]	Illumina [7759885] (imputed)	N
885	chr21	39421573	39421574	rs2257130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.13	DSCR4	rs2257130-T	NR	2E-8		0.0173819	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
885	chr21	39421573	39421574	rs2257130	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.13	DSCR4	rs2257130-T	NR	3E-8		0.0172552	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
886	chr21	39456225	39456226	rs10460716	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.13	NR	rs10460716-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
886	chr21	39456225	39456226	rs10460716	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	21q22.13	NR	rs10460716-A	0.4622	4E-12		0.0125	[0.009-0.016] unit decrease	NR [~ 27400000] (imputed)	N
886	chr21	39465014	39465015	rs56248825	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.13	DSCR4	rs56248825-T	NR	1E-8		0.0257025	[0.017-0.035] unit increase	Affymetrix [321016] (imputed)	N
886	chr21	39484322	39484323	rs9976841	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	21q22.13	NA	rs9976841-A	0.3871	2E-12		0.0129	[0.0094-0.0164] unit decrease	NR [~ 27400000] (imputed)	N
886	chr21	39504355	39504356	rs2836162	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	21q22.13	NR	rs2836162-A	0.6035	1E-16		0.0146	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
886	chr21	39526408	39526409	rs2836171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.13	DSCR8	rs2836171-A	NR	3E-16		0.0233352	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
886	chr21	39526408	39526409	rs2836171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.13	DSCR8	rs2836171-A	NR	2E-15		0.0225856	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
886	chr21	39526408	39526409	rs2836171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.13	DSCR8	rs2836171-A	NR	3E-14		0.0219106	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
886	chr21	39526408	39526409	rs2836171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q22.13		rs2836171-?	NR	5E-18				NR [~ 8900000] (imputed)	N
886	chr21	39544158	39544159	rs2836179	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	21q22.13	NR	rs2836179-G	0.6	3E-19		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
886	chr21	39544158	39544159	rs2836179	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	21q22.13	NR	rs2836179-G	0.6	5E-8				Affymetrix [2446094] (imputed)	N
886	chr21	39554630	39554634	rs141243103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	21q22.13	DSCR8, KCNJ15	rs141243103-G	0.372759	9E-19		0.020385135	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
886	chr21	39554630	39554634	rs141243103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	21q22.13	DSCR8, KCNJ15	rs141243103-G	0.372764	8E-13		0.016489472	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
886	chr21	39582226	39582227	rs9305635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs9305635-G	NR	7E-10		0.0185198	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
886	chr21	39582226	39582227	rs9305635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs9305635-G	NR	2E-9		0.0181006	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
886	chr21	39582226	39582227	rs9305635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs9305635-G	NR	6E-9		0.0176633	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
887	chr21	39597114	39597115	rs11701188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	KCNJ15	rs11701188-?	NR	6E-6	(TAG 54:6)	0.35729486	[0.2-0.51] unit increase	Affymetrix [at least 2500000] (imputed)	N
887	chr21	39597114	39597115	rs11701188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	KCNJ15	rs11701188-?	NR	5E-6	(TAG 52:5)	0.3663663	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
887	chr21	39597114	39597115	rs11701188	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.13	KCNJ15	rs11701188-?	NR	5E-6	(TAG 52:4)	0.36583164	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
887	chr21	39600498	39600499	rs2836220	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.13	KCNJ15	rs2836220-C	0.336244	2E-10		0.014961565	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
887	chr21	39602250	39602251	rs12482324	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.13	Intergenic	rs12482324-T	0.5857	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
887	chr21	39615380	39615380	rs111986589	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs111986589-ATCACTCTG	NR	3E-9		0.0170003	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
887	chr21	39626473	39626474	rs2211864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	21q22.13	KCNJ15	rs2211864-T	NR	8E-9		0.0177778	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
887	chr21	39633010	39633010	rs778237090	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs778237090-G	NR	5E-8		0.0192776	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
887	chr21	39639866	39639867	rs2836262	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.13	NR	rs2836262-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
887	chr21	39644385	39644386	rs13050229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs13050229-A	NR	9E-10		0.0196864	[0.013-0.026] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39644385	39644386	rs13050229	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs13050229-A	NR	3E-9		0.0190979	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39670771	39670772	rs9983358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q22.13		rs9983358-A	NR	1E-46		0.0191	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
887	chr21	39670981	39670982	rs9983533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.13	KCNJ15	rs9983533-G	NR	6E-10		0.0223363	[0.015-0.029] unit increase	Affymetrix [321016] (imputed)	N
887	chr21	39673980	39673981	rs2298333	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q22.2	KCNJ15	rs2298333-T	0.5677	1E-43		0.0267	[0.023-0.03] unit decrease	Affymetrix [18391927] (imputed)	N
887	chr21	39674569	39674570	rs12329856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.2	KCNJ15	rs12329856-T	NR	6E-11		0.0235978	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39674569	39674570	rs12329856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.2	KCNJ15	rs12329856-T	NR	3E-10		0.0226896	[0.016-0.03] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39674569	39674570	rs12329856	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.2	KCNJ15	rs12329856-T	NR	2E-8		0.0203769	[0.013-0.028] unit decrease	Affymetrix [321169] (imputed)	N
887	chr21	39675980	39675980	rs113321764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.2	KCNJ15	rs113321764-G	NR	2E-12		0.020695	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39675980	39675980	rs113321764	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.2	KCNJ15	rs113321764-G	NR	3E-10		0.0186155	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
887	chr21	39689979	39689979	rs140708629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.2	AP001422.3	rs140708629-T	NR	8E-14		0.0220346	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
887	chr21	39689979	39689979	rs140708629	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.2	KCNJ15, LINC01423	rs140708629-?	NR	4E-19		0.028287752	[0.022-0.034] unit decrease	Illumina [27896057] (imputed)	N
887	chr21	39690071	39690072	rs9976787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.2	AP001422.3	rs9976787-G	NR	3E-14		0.0223775	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
887	chr21	39690218	39690219	rs2410017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	21q22.2		rs2410017-T	0.345826	2E-17		0.0188819	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
887	chr21	39690244	39690245	rs9976812	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs9976812-?	NR	2E-54				NR [~ 8900000] (imputed)	N
887	chr21	39690754	39690754	rs35772885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	21q22.2		rs35772885-TA	NR	9E-13		0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
887	chr21	39708556	39708557	rs9789910	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.2	NR	rs9789910-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
888	chr21	39721763	39721764	rs2836326	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	21q22.2	ERG	rs2836326-G	NR	3E-6		0.2311	unit decrease	Illumina [5767231] (imputed)	N
888	chr21	39722912	39722913	rs2836329	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	21q22.2	AP001422.3	rs2836329-C	NR	7E-10		0.0191784	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
888	chr21	39732395	39732396	rs190544851	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Non-response to antidepressants and depression	1,311 European ancestry non-responder cases, 192,178 European ancestry healthy controls	NA	21q22.2	KCNJ15, ERG	rs190544851-?		3E-7		14.29	[3.555-57.454]	Illumina [~ 12000000] (imputed)	N
888	chr21	39776484	39776485	rs9976326	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia (high-hyperdiploidy)	1,369 European ancestry cases, 16,666 European ancestry controls	422 cases, 3,461 controls	21q22.2	ERG	rs9976326-T	0.25	5E-9		1.33	[1.21-1.46]	Affymetrix, Illumina [~ 6118121] (imputed)	N
888	chr21	39776484	39776485	rs9976326	31767839	Vijayakrishnan J	2019-11-25	Nat Commun	Identification of four novel associations for B-cell acute lymphoblastic leukaemia risk.	B-cell acute lymphoblastic leukaemia	5,321 European ancestry cases, 16,666 European ancestry controls	2,237 cases, 3,461 controls	21q22.2	ERG	rs9976326-T	0.25	1E-8		1.19	[1.12-1.26]	Affymetrix, Illumina [~ 6118121] (imputed)	N
888	chr21	39793178	39793179	rs725233	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.2	KCNJ15	rs725233-?	NR	9E-6	(pantothenic acid)	0.33379567	[0.19-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
888	chr21	39805502	39805503	rs56180262	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs56180262-?	NR	1E-8				NR [~ 8900000] (imputed)	N
888	chr21	39819829	39819830	rs2836411	27899403	Jones GT	2016-11-29	Circ Res	Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci.	Abdominal aortic aneurysm	4,972 European ancestry cases, 99,858 European ancestry controls	2,482 European ancestry cases, 2,750 cases, 2,645 European ancestry controls, 5,263 controls	21q22.2	ERG	rs2836411-T	0.369	6E-9		1.113	[1.074-1.154]	Affymetrix, Illumina [5363770] (imputed)	N
888	chr21	39835030	39835031	rs2836418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.2		rs2836418-C	NR	9E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
888	chr21	39836203	39836204	rs1984021	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	21q22.2		rs1984021-G	0.864	6E-10				Affymetrix [10369434] (imputed)	N
888	chr21	39836203	39836204	rs1984021	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	21q22.2		rs1984021-G	0.864	1E-11				Affymetrix [10369434] (imputed)	N
888	chr21	39837622	39837623	rs35042034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	21q22.2		rs35042034-A	NR	2E-13		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
888	chr21	39837622	39837623	rs35042034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	21q22.2	ERG	rs35042034-A	0.16846	8E-17		0.024706392	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39837622	39837623	rs35042034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs35042034-A	0.21554	1E-20				Affymetrix, Illumina [24332387] (imputed)	N
888	chr21	39837622	39837623	rs35042034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.2		rs35042034-?	NR	8E-21				NR [~ 8900000] (imputed)	N
888	chr21	39838034	39838035	rs2836422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	21q22.2		rs2836422-A	NR	4E-12		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
888	chr21	39838034	39838035	rs2836422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	21q22.2		rs2836422-A	NR	3E-12		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.2	ERG	rs2836422-A	0.604397	6E-12		0.015847709	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.2	ERG	rs2836422-A	0.60416	3E-10		0.014658301	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.2	ERG	rs2836422-A	0.604355	2E-17		0.0208671	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.2	ERG	rs2836422-A	0.604313	2E-14		0.017582545	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q22.2	NR	rs2836422-A	0.602615	2E-22		0.01865	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2836422-A	0.527918	2E-24				Affymetrix, Illumina [24246363] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	21q22.2	NR	rs2836422-A	0.602635	1E-26		0.020117	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2836422-A	0.522719	5E-22				Affymetrix, Illumina [20825802] (imputed)	N
888	chr21	39838034	39838035	rs2836422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.2	NR	rs2836422-A	0.603688	4E-22		0.019269	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
888	chr21	39838034	39838035	rs2836422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.2		rs2836422-?	NR	1E-18				NR [~ 8900000] (imputed)	N
888	chr21	39838034	39838035	rs2836422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	21q22.2	ERG	rs2836422-A	0.6045	5E-12		0.02531869	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
888	chr21	39838034	39838035	rs2836422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	21q22.2	ERG	rs2836422-A	0.6045	1E-9		0.02230944	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
888	chr21	39838824	39838825	rs2836425	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.2	ERG	rs2836425-T	0.13464	1E-28		0.036723543	[0.03-0.043] unit increase	Affymetrix [93095623] (imputed)	N
888	chr21	39838824	39838825	rs2836425	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	21q22.2	ERG	rs2836425-T	NR	2E-7		1.18	[1.11-1.25]	Illumina [at least 8143088] (imputed)	N
888	chr21	39841972	39841973	rs7277642	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.2	ERG	rs7277642-C	0.140802	7E-10		0.019778358	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr21	39843082	39843083	rs2836427	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.2	ERG	rs2836427-A	0.134641	2E-40		0.04473189	[0.038-0.051] unit increase	Affymetrix [93095623] (imputed)	N
888	chr21	39845274	39845275	rs78762153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	21q22.2		rs78762153-C	0.082131	4E-60		0.137516	[0.12-0.15] unit increase	Illumina [13469940] (imputed)	N
888	chr21	39845274	39845275	rs78762153	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	21q22.2		rs78762153-C	NR	9E-49		0.1073	[0.093-0.122] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
888	chr21	39845274	39845275	rs78762153	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	21q22.2	NR	rs78762153-T	0.921356	3E-60		0.155886	[0.14-0.17] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
888	chr21	39845274	39845275	rs78762153	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	21q22.2	ERG	rs78762153-?	NR	1E-43		0.1519	[0.13-0.17] unit increase novel	Illumina [6108953] (imputed)	N
889	chr21	39846141	39846142	rs34825969	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	21q22.2		rs34825969-A	NR	1E-29		0.0291	[0.024-0.034] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
889	chr21	39849552	39849553	rs2836430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2836430-G	0.15285	7E-50				Affymetrix, Illumina [24588908] (imputed)	N
889	chr21	39849552	39849553	rs2836430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q22.2	NR	rs2836430-G	0.134131	3E-41		0.036159	[0.031-0.041] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
889	chr21	39850954	39850955	rs80109907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.2		rs80109907-A	NR	3E-12		0.0427	[0.031-0.055] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.00916399999999995	2E-22		0.11430054	[0.091-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.00916899999999998	2E-10		0.07503515	[0.052-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.009154	3E-10		0.0814548	[0.06-0.103] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.00915900000000003	5E-9		0.068853684	[0.046-0.092] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.009158	2E-9		0.07056947	[0.048-0.093] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.2	ERG	rs80109907-A	0.00915600000000005	2E-10		0.074481525	[0.052-0.097] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs80109907-A	0.0203496	3E-24				Affymetrix, Illumina [23467995] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs80109907-A	0.020929	6E-16				Affymetrix, Illumina [19872809] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.2	NR	rs80109907-A	0.009404	6E-15		0.080963	[0.061-0.101] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
889	chr21	39850954	39850955	rs80109907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs80109907-A	0.0203194	1E-70				Affymetrix, Illumina [19905671] (imputed)	N
889	chr21	39850954	39850955	rs80109907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.2		rs80109907-?	NR	5E-10				NR [~ 8900000] (imputed)	N
889	chr21	39850954	39850955	rs80109907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	21q22.2	ERG	rs80109907-A	0.0096	5E-9		0.1069089	[0.071-0.143] unit decrease	Affymetrix [~ 2500000] (imputed)	N
889	chr21	39850954	39850955	rs80109907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	21q22.2	ERG	rs80109907-A	0.0096	3E-9		0.1084824	[0.073-0.144] unit increase	Affymetrix [~ 2500000] (imputed)	N
889	chr21	39852514	39852518	rs544037525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	21q22.2	ERG	rs544037525-C	0.203365	9E-15		0.022228839	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr21	39852550	39852551	rs7275212	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	21q22.2	ERG	rs7275212-T	0.08	2E-18	(basophil count)	0.197	[0.16-0.24] unit increase	Illumina [2178645] (imputed)	N
889	chr21	39854477	39854478	rs58030288	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	21q22.2		rs58030288-T	NR	1E-16		0.0552	[0.042-0.068] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
889	chr21	39854477	39854478	rs58030288	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	21q22.2	ERG	rs58030288-T	0.0097	2E-9		0.1101408	[0.074-0.146] unit increase	Affymetrix [~ 2500000] (imputed)	N
889	chr21	39856201	39856202	rs74276531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	21q22.2	NR	rs74276531-T	0.91822	3E-10		0.053951	[0.037-0.071] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
889	chr21	39856414	39856415	rs1013766	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	21q22.2		rs1013766-A	0.229154	2E-12		0.0280707	[0.02-0.036] unit increase	Illumina [13478928] (imputed)	N
889	chr21	39856896	39856897	rs77106233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	21q22.2		rs77106233-G	0.083839	3E-10		0.0498971	[0.034-0.065] unit decrease	Illumina [13471440] (imputed)	N
889	chr21	39857627	39857628	rs13052418	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs13052418-G	0.152875	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
889	chr21	39858901	39858902	rs2212930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2212930-G	0.532356	1E-16				Affymetrix, Illumina [24649327] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q22.2	ERG	rs2212931-G	0.417117	2E-12		0.01587829	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q22.2	ERG	rs2212931-G	0.41711	3E-13		0.016482156	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	21q22.2	ERG	rs2212931-G	0.417158	1E-9		0.013789463	[0.0094-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	21q22.2	NR	rs2212931-G	0.417773	4E-17		0.015794	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2212931-G	0.376575	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
889	chr21	39859189	39859190	rs2212931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q22.2	NR	rs2212931-G	0.417711	1E-16		0.016216	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
889	chr21	39860255	39860256	rs35568883	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	21q22.2		rs35568883-A	NR	1E-7	(additive)	0.692	[0.131-0.435] unit increase	Illumina [5894709] (imputed)	N
889	chr21	39864726	39864727	rs2836438	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	21q22.2	ERG	rs2836438-A	NR	3E-10		1.1061947	NR	Affymetrix, Illumina [8278136] (imputed)	N
889	chr21	39865854	39865855	rs9982370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.2	NR	rs9982370-T	0.233814	5E-12		0.015092	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
889	chr21	39865854	39865855	rs9982370	25383866	Kirkpatrick RM	2014-11-10	PLoS One	Results of a "GWAS plus:" general cognitive ability is substantially heritable and massively polygenic.	General cognitive ability	7,100 European ancestry individuals	NA	21q22.2	ERG	rs9982370-?	NR	1E-6				Illumina [2546647] (imputed)	N
889	chr21	39868926	39868927	rs2226683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.2	ERG	rs2226683-C	0.852588	8E-11		0.020312984	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39868926	39868927	rs2226683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.2	ERG	rs2226683-C	0.852585	2E-12		0.021972712	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
889	chr21	39868926	39868927	rs2226683	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs2226683-C	0.844477	8E-11				Affymetrix, Illumina [24653286] (imputed)	N
889	chr21	39870309	39870310	rs2836441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	21q22.2	ERG	rs2836441-A	0.8519	2E-28		0.05728317	[0.047-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
889	chr21	39870309	39870310	rs2836441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	21q22.2	ERG	rs2836441-A	0.8517	3E-17		0.04350818	[0.033-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
889	chr21	39871434	39871435	rs2836444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.2	ERG	rs2836444-C	0.220612	3E-10		0.017581273	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
889	chr21	39878981	39878982	rs1015022	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	21q22.2		rs1015022-C	NR	1E-15		0.0179	[0.014-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
889	chr21	39878981	39878982	rs1015022	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.2		rs1015022-?	NR	7E-15				NR [~ 8900000] (imputed)	N
889	chr21	39879850	39879851	rs11911137	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q22.2	NR	rs11911137-A	0.851958	1E-14		0.020034	[0.015-0.025] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
889	chr21	39880853	39880854	rs7277942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	21q22.2		rs7277942-T	0.276258	1E-9		0.0230508	[0.016-0.031] unit decrease	Illumina [13479091] (imputed)	N
889	chr21	39898388	39898389	rs2836472	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	21q22.2		rs2836472-T	0.43	9E-14		7.45	z score increase	Affymetrix [9061022] (imputed)	N
889	chr21	39940807	39940808	rs74680252	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	21q22.2		rs74680252-?	NR	2E-7		0.24994965	[0.16-0.34] unit decrease	Illumina [9939936] (imputed)	N
889	chr21	39945673	39945674	rs140397425	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	21q22.2	NR	rs140397425-A		5E-6		1.1596	[0.66-1.66] unit decrease	Illumina [12759548] (imputed)	N
889	chr21	39972726	39972727	rs9636639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	21q22.2		rs9636639-A	NR	9E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
889	chr21	39976700	39976701	rs2836565	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	21q22.2	ERG	rs2836565-A	0.04	2E-6	(female)	0.263	[0.16-0.37] unit decrease	Illumina [6380737] (imputed)	N
890	chr21	39978227	39978228	rs117910189	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	21q22.2	ERG	rs117910189-T	NR	5E-7		0.398	[0.24-0.55] unit decrease	Illumina [27700000] (imputed)	N
890	chr21	39983403	39983404	rs2212597	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q22.2	ERG	rs2212597-?		5E-11				Affymetrix, Illumina [NR] (imputed)	N
890	chr21	39983447	39983448	rs117870289	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	21q22.2		rs117870289-T	NR	2E-22		0.0845	[0.067-0.102] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
890	chr21	39983447	39983448	rs117870289	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q22.2	ERG	rs117870289-T	0.0149	1E-16		0.0639	[0.049-0.079] unit decrease	Affymetrix [18391927] (imputed)	N
890	chr21	39983447	39983448	rs117870289	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs117870289-?	NR	1E-11				NR [~ 8900000] (imputed)	N
890	chr21	39983447	39983448	rs117870289	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.2	ERG	rs117870289-T	0.0132	2E-10		0.9026	[0.63-1.18] mmHg increase	Affymetrix [NR] (imputed)	N
890	chr21	39983447	39983448	rs117870289	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.2	ERG	rs117870289-T	0.4917	2E-8		0.7768	[0.51-1.05] mmHg decrease	Affymetrix [NR] (imputed)	N
890	chr21	39983447	39983448	rs117870289	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	21q22.2	chr21mb39	rs117870289-T	0.014877699	3E-7		0.7705	[0.48-1.06] unit increase	Affymetrix [~ 9800000] (imputed)	N
890	chr21	39983447	39983448	rs117870289	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.2	ERG	rs117870289-C		2E-9		0.732	unit decrease	Affymetrix [at least 2696785] (imputed)	N
890	chr21	39983447	39983448	rs117870289	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.2	ERG	rs117870289-C		1E-6		0.537	unit increase	Affymetrix [at least 2696785] (imputed)	N
890	chr21	40006080	40006081	rs460214	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	21q22.2	ERG	rs460214-?	0.269	6E-6	(post-treatment)			Illumina [3017604] (imputed)	N
890	chr21	40007221	40007222	rs9977881	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	21q22.2	NR	rs9977881-C	0.17	3E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
890	chr21	40017445	40017446	rs9981408	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	21q22.2		rs9981408-T	0.2341	2E-12		1.09505	[1.067710316-1.123089686]	Affymetrix, Illumina [NR] (imputed)	N
890	chr21	40027942	40027943	rs8132920	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	21q22.2		rs8132920-T	NR	4E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
890	chr21	40044939	40044940	rs2212606	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	21q22.2		rs2212606-A	0.333	4E-7		0.85	[0.8-0.91]	Illumina [7199488] (imputed)	N
890	chr21	40047175	40047176	rs2836613	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.2	ERG	rs2836613-G	0.246865	1E-42		0.0296705	[0.025-0.034] unit decrease	NR [13737936] (imputed)	N
890	chr21	40047175	40047176	rs2836613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.2		rs2836613-?	NR	5E-41				NR [~ 8900000] (imputed)	N
890	chr21	40047175	40047176	rs2836613	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.2		rs2836613-?	NR	3E-38		0.0303614	[0.026-0.035] unit decrease	Affymetrix [20259828] (imputed)	N
890	chr21	40047175	40047176	rs2836613	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	ERG	rs2836613-G	0.248639	3E-11	(women)	0.0359405	[0.025-0.047] unit decrease	NR [17166351] (imputed)	N
890	chr21	40047175	40047176	rs2836613	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	ERG	rs2836613-G	0.247835	4E-17		0.0323954	[0.025-0.04] unit decrease	NR [17166351] (imputed)	N
890	chr21	40047175	40047176	rs2836613	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	ERG	rs2836613-G	0.246914	8E-8	(men)	0.0314461	[0.02-0.043] unit decrease	NR [17166351] (imputed)	N
890	chr21	40048294	40048295	rs2836618	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	21q22.2	NR	rs2836618-A	0.26	3E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 17000000] (imputed)	N
890	chr21	40056422	40056423	rs743446	20662065	Clancy RM	2010-07-26	Arthritis Rheum	Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.	Neonatal lupus	116 European ancestry cases, 3,351 European ancestry controls	NA	21q22.2	NCRNA00114, ERG	rs743446-?	0.49	5E-6		2.4	[1.64-3.49]	Illumina [346110]	N
890	chr21	40059291	40059292	rs2836627	29436472	Casalone E	2018-02-07	Ann Rheum Dis	A novel variant in GLIS3 is associated with osteoarthritis.	Osteoarthritis of the hip (with total joint replacement)	2,517 European ancestry cases, 9,939 European ancestry healthy controls	2,282 European ancestry cases, 9,193 European ancestry healthy controls	21q22.2	NR	rs2836627-T	0.264466	7E-6		1.03	[1.01-1.04]	Illumina [270934]	N
890	chr21	40067444	40067445	rs2836633	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	21q22.2	intergenic	rs2836633-A	0.5349	7E-6		0.0285	[0.016-0.041] unit decrease	NR [8041861] (imputed)	N
891	chr21	40123739	40123740	rs11702843	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.2	NA	rs11702843-A	0.2531	2E-9		0.0121	[0.0082-0.016] unit increase	NR [~ 27400000] (imputed)	N
891	chr21	40173527	40173528	rs1209950	21079520	Sato Y	2010-11-12	J Thorac Oncol	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	21q22.2	ETS2	rs1209950-T	NR	3E-7		4.96	[2.52-9.76] (CT)	Illumina [109365]	N
891	chr21	40190619	40190620	rs10854389	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs10854389-C	0.653503	9E-10		0.0558603	[0.037-0.075] increase	Affymetrix [11014269] (imputed)	N
891	chr21	40195541	40195541	rs11422952	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	21q22.2	ETS2	rs11422952-G	0.6376	4E-13		0.1032	[0.074-0.132] unit increase	Affymetrix [~ 11900000] (imputed)	N
891	chr21	40202968	40202969	rs2015748	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	21q22.2	ETS2	rs2015748-A	NR	9E-6		1.1013216	[1.04-1.17]	Illumina [6627481] (imputed)	N
891	chr21	40204148	40204149	rs762387	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	21q22.2	ETS2, LOC101928398	rs762387-T	0.6649	1E-11		0.0966	[0.067-0.126] unit increase	Affymetrix [~ 11900000] (imputed)	N
892	chr21	40252493	40252494	rs62217833	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AP001043.1	rs62217833-?	NR	5E-11	(male)	2.05867	[NR] unit decrease	Affymetrix [NR] (imputed)	N
892	chr21	40283732	40283733	rs9979250	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	21q22.2	ETS2	rs9979250-T	0.04	4E-7	(Age 20-60 years)	0.1497	[0.092-0.208] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
892	chr21	40286248	40286249	rs374598319	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.2	NR	rs374598319-T	0.01045	3E-8	(LRG1)	0.06507	NR unit increase	Illumina [1671387] (imputed)	N
892	chr21	40288576	40288577	rs8132491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.2	NR	rs8132491-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
892	chr21	40290958	40290959	rs2836751	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	21q22.2	AF064858.6	rs2836751-?	NR	6E-6	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
892	chr21	40291739	40291740	rs2836754	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	21q22.2	NR	rs2836754-T	NR	7E-11		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
892	chr21	40291739	40291740	rs2836754	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	21q22.2	NR	rs2836754-T	0.38550320621097	6E-6		0.012876494	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
892	chr21	40291739	40291740	rs2836754	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.2	ETS2	rs2836754-C	0.614	7E-6	(EA, women)	0.019	[0.01-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr21	40291739	40291740	rs2836754	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.2	ETS2	rs2836754-C	0.612	4E-7	(EA)	0.016	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr21	40291739	40291740	rs2836754	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.2	ETS2	rs2836754-C	0.599	2E-8		0.017	[0.011-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
892	chr21	40291739	40291740	rs2836754	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	21q22.2	intergenic	rs2836754-?	0.35	5E-7		1.15	[1.03-1.28]	Affymetrix [see WTCCC]	N
892	chr21	40296410	40296411	rs11701433	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	21q22.2	NR	rs11701433-C	NR	1E-8		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
892	chr21	40296410	40296411	rs11701433	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		21q22.2	ETS2	rs11701433-C	0.330577	6E-10		0.00908795	[0.0062-0.012] unit decrease	Affymetrix [12370749]	N
892	chr21	40301955	40301956	rs2142109	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	21q22.2	Intergenic	rs2142109-?	NR	8E-6		1.481	[NR]	Affymetrix [492217] (imputed)	N
892	chr21	40303676	40303677	rs1006893	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.2	NA	rs1006893-T	0.757	2E-9		0.0119	[0.008-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
892	chr21	40309121	40309122	rs1029003	33055079	Boer CG	2020-10-14	Ann Rheum Dis	Genome-wide association of phenotypes based on clustering patterns of hand osteoarthritis identify <i>WNT9A</i> as novel osteoarthritis gene.	Finger osteoarthritis severity (hand Klsum)	1,791 Dutch ancestry individuals	1,203 individuals	21q22.2	ETS2, PSMG1	rs1029003-A	0.46	6E-7		0.42	[0.24-0.6] unit increase	Illumina [10500000] (imputed)	N
892	chr21	40309435	40309436	rs13047416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	21q22.2		rs13047416-G	NR	9E-13		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
892	chr21	40309435	40309436	rs13047416	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	21q22.2	ETS2	rs13047416-C	0.622962	2E-17		0.0123424	[0.0095-0.0152] unit increase	Affymetrix [12370749]	N
892	chr21	40309435	40309436	rs13047416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.2		rs13047416-?	NR	1E-11				NR [~ 8900000] (imputed)	N
892	chr21	40311492	40311493	rs2836768	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	21q22.2	LOC400867, LOC101928435	rs2836768-T	0.41	6E-12		0.02	[0.014-0.026] unit decrease	Illumina [6108953] (imputed)	N
892	chr21	40314703	40314704	rs2836770	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	21q22.2	FLJ45139	rs2836770-?		3E-6	(EA)			Illumina [NR]	N
892	chr21	40315315	40315316	rs9983113	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	21q22.2	LOC400867, LOC101928435	rs9983113-T	0.776	2E-8	(Japanese)	0.023	[0.015-0.031] unit decrease	Illumina [6108953] (imputed)	N
892	chr21	40321710	40321711	rs7283257	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.2	LOC400867	rs7283257-T	0.948547	9E-10		0.0262047	[0.018-0.035] unit decrease	NR [13737936] (imputed)	N
892	chr21	40322677	40322678	rs2836779	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (response to exercise)	51,897 European ancestry individuals	NA	21q22.2	ETS2	rs2836779-C	0.353	1E-10	(men)	0.061	[0.043-0.079] unit increase	Affymetrix [~ 9000000] (imputed)	N
892	chr21	40329261	40329262	rs2836783	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	21q22.2	AF064858.6	rs2836783-T	0.6949	2E-6		0.0328	[0.019-0.046] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
892	chr21	40330771	40330772	rs12165276	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.2		rs12165276-?	NR	2E-20		0.040157	[0.031-0.049] unit decrease	Affymetrix [20259828] (imputed)	N
892	chr21	40338816	40338817	rs9980072	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	21q22.2	ETS2	rs9980072-G	0.73	3E-13		1.04	[1.03-1.05]	Affymetrix, Illumina [2539801] (imputed)	N
892	chr21	40338994	40338995	rs2836789	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	21q22.2	LINC01700	rs2836789-C	0.2845	8E-29		0.0367	[0.03-0.043] unit decrease	NR [13977204] (imputed)	N
892	chr21	40343086	40343087	rs9982895	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.2		rs9982895-?	NR	9E-91		0.0465712	[0.042-0.051] unit increase	Affymetrix [20259828] (imputed)	N
892	chr21	40350119	40350120	rs11088458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	21q22.2		rs11088458-G	NR	5E-10		0.0742	[0.051-0.098] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
892	chr21	40350119	40350120	rs11088458	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	21q22.2		rs11088458-G	NR	3E-11		0.0869	[0.061-0.113] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
892	chr21	40350119	40350120	rs11088458	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.2	LINC01700	rs11088458-A	0.280885	4E-86		0.0413982	[0.037-0.046] unit increase	NR [13737936] (imputed)	N
892	chr21	40350119	40350120	rs11088458	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.2		rs11088458-?	NR	1E-113				NR [~ 8900000] (imputed)	N
892	chr21	40350119	40350120	rs11088458	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.2		rs11088458-?	NR	6E-99		0.0477703	[0.043-0.052] unit increase	Affymetrix [20259828] (imputed)	N
892	chr21	40350119	40350120	rs11088458	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	LINC01700	rs11088458-A	0.288916	6E-11	(women)	0.0328462	[0.023-0.043] unit increase	NR [17166351] (imputed)	N
892	chr21	40350119	40350120	rs11088458	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	LINC01700	rs11088458-A	0.287892	4E-31		0.0432012	[0.036-0.051] unit increase	NR [17166351] (imputed)	N
892	chr21	40350119	40350120	rs11088458	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.2	LINC01700	rs11088458-A	0.28672	2E-23	(men)	0.054664	[0.043-0.066] unit increase	NR [17166351] (imputed)	N
892	chr21	40350743	40350744	rs11910328	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q22.2	NR	rs11910328-A	0.8372	9E-9	(European)	0.0489	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
892	chr21	40350743	40350744	rs11910328	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	21q22.2	NR	rs11910328-A	0.8351	3E-8		0.0429	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
893	chr21	40380248	40380249	rs2836823	17158188	Bierut LJ	2006-12-07	Hum Mol Genet	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Nicotine dependence	482 European ancestry cases, 466 European ancestry controls	568 European ancestry cases, 413 European ancestry controls	21q22.2	NR	rs2836823-T	0.40	2E-6		1.46	[1.23-1.73]	Perlegen [2400000]	N
893	chr21	40385004	40385004	rs34194528	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	21q22.2		rs34194528-?	NR	1E-6		0.3666479	[0.22-0.51] unit increase	Illumina [9842460] (imputed)	N
893	chr21	40389460	40389461	rs74819631	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	21q22.2	NR	rs74819631-G	0.099	9E-6		0.44	[0.24-0.64] unit decrease	Illumina [9469131] (imputed)	N
893	chr21	40406629	40406630	rs13050568	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	21q22.2	LOC101928435, PSMG1	rs13050568-A	NR	8E-7		0.0425	unit increase	Illumina [15409056] (imputed)	N
893	chr21	40419320	40419321	rs147427629	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	21q22.2	LOC107985484	rs147427629-?		4E-8	(ovarian cancer, uterine endometriosisometrial cancer)			Illumina [7645193] (imputed)	N
893	chr21	40423470	40423471	rs2242936	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	21q22.2		rs2242936-C	0.1413	9E-6	(East Asian)	1.09	[1.05-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
893	chr21	40448888	40448889	rs17231256	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Eye morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	21q22.2	ETS2, PSMG1	rs17231256-T	0.13	2E-6	(Left palpebral fissure height)	0.17	[NR] unit decrease	Affymetrix [311944]	N
893	chr21	40459093	40459094	rs13048533	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	21q22.2		rs13048533-?	NR	1E-10		0.055	NR unit decrease	NR [5896510] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q22.2	NR	rs9977672-A	0.258004	3E-18		0.0222721	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.2		rs9977672-A	0.258194	1E-9		0.015927073	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q22.2		rs9977672-A	0.25802	3E-22		0.024812197	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.237136	2E-26				Affymetrix, Illumina [24649327] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.259116	7E-25		0.021872	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9977672-G	0.744277	5E-13				Affymetrix, Illumina [22063850] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.243782	9E-25				Affymetrix, Illumina [23114412] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.2588	7E-24		0.022323	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.236856	9E-13				Affymetrix, Illumina [20825802] (imputed)	N
893	chr21	40463282	40463283	rs9977672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.2	NR	rs9977672-A	0.257836	2E-13		0.01645	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
893	chr21	40463282	40463283	rs9977672	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	21q22.2	LOC101928435	rs9977672-G	NR	1E-7		1.0595	NR	Affymetrix, Illumina [8278136] (imputed)	N
893	chr21	40463282	40463283	rs9977672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.2		rs9977672-?	NR	5E-11				NR [~ 8900000] (imputed)	N
893	chr21	40463282	40463283	rs9977672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	21q22.2	intergenic	rs9977672-A	0.2583	5E-9		0.0243021	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40463282	40463283	rs9977672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	21q22.2	intergenic	rs9977672-A	0.2582	7E-10		0.02561649	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40463282	40463283	rs9977672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	21q22.2	intergenic	rs9977672-A	0.2583	7E-10		0.02553876	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40463282	40463283	rs9977672	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	21q22.2	intergenic	rs9977672-A	0.2582	4E-9		0.02445551	[0.016-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40463282	40463283	rs9977672	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	21q22.2	intergenic	rs9977672-?	NR	5E-54	(subset analysis)			Illumina [130052]	N
893	chr21	40464713	40464714	rs5843947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	21q22.2		rs5843947-T	0.295922	3E-14		0.019196514	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr21	40464713	40464714	rs5843947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.2		rs5843947-T	0.29591	3E-11		0.016699895	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
893	chr21	40464730	40464731	rs397867270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	21q22.2		rs397867270-T	NR	2E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
893	chr21	40464923	40464924	rs4817983	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ulcerative colitis	5,371 European ancestry cases, 412,561 European ancestry controls, 314 East Asian ancestry cases, 178,375 East Asian ancestry controls	NA	21q22.2		rs4817983-C	NR	6E-14		0.1707	[0.13-0.22] unit decrease	Affymetrix, Illumina [25840981] (imputed)	N
893	chr21	40464923	40464924	rs4817983	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	21q22.2	NR	rs4817983-G	0.732537	3E-14		0.016229	[0.012-0.02] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
893	chr21	40465065	40465066	rs4817984	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	21q22.2	ETS2	rs4817984-A	0.29	3E-20	(BMI-adjusted)	0.041	[0.033-0.049] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
893	chr21	40465065	40465066	rs4817984	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	21q22.2	NR	rs4817984-?	NR	1E-10		1.8518518	[NR]	Illumina [up to 547389]	N
893	chr21	40465065	40465066	rs4817984	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	21q22.2	NR	rs4817984-?	0.71	3E-8	(Turkish)	1.8518518	[1.49-2.27]	Illumina [up to 547389]	N
893	chr21	40465177	40465178	rs2242944	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	21q22.2	NR	rs2242944-A	0.3617	6E-6		0.5838	[0.4625-0.737]	Illumina [4388215] (imputed)	N
893	chr21	40465177	40465178	rs2242944	20062062	Reveille JD	2010-01-10	Nat Genet	Genome-wide association study of ankylosing spondylitis identifies non-MHC susceptibility loci.	Ankylosing spondylitis	2,053 European ancestry cases, 5,140 European ancestry controls	898 European ancestry cases, 1,518 European ancestry controls	21q22.2	PSMG1	rs2242944-?	0.63	8E-20		1.39	[1.28-1.49]	Illumina [288662]	N
893	chr21	40465511	40465512	rs4817986	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		21q22.2	ETS2, PSMG1	rs4817986-?	NR	2E-14		0.0091	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
893	chr21	40465511	40465512	rs4817986	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	21q22.2	PSMG1	rs4817986-T	0.28	2E-11	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
893	chr21	40465533	40465534	rs2836878	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	21q22.2	NR	rs2836878-G	0.73	2E-21		1.21	[NR]	NR [8546065] (imputed)	N
893	chr21	40465533	40465534	rs2836878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	21q22.2	NR	rs2836878-A	NR	1E-12		0.0191	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	21q22.2	NR	rs2836878-A	NR	5E-33		0.0324	[0.027-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	C-reactive protein levels	8,349 African American individuals, 15,912 Hispanic/Latino individuals, 1,811 Asian ancestry individuals, 1,777 Native Hawaiian ancestry individuals, 574 Native American ancestry individuals, 97 individuals	NA	21q22.2	NR	rs2836878-?	NR	1E-6		0.04683362	[0.028-0.066] unit decrease	Illumina [30861016] (imputed)	N
893	chr21	40465533	40465534	rs2836878	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	21q22.2	DSCR2	rs2836878-G	0.27	8E-26		0.043	[0.035-0.051] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
893	chr21	40465533	40465534	rs2836878	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.2	intergenic	rs2836878-A	0.256	8E-9		0.0123	[0.0082-0.0164] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	21q22.2	Intergenic	rs2836878-?		2E-32				Illumina [9578670] (imputed)	N
893	chr21	40465533	40465534	rs2836878	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	21q22.2	Intergenic	rs2836878-?		2E-29				Illumina [9725440] (imputed)	N
893	chr21	40465533	40465534	rs2836878	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	21q22.2	Intergenic	rs2836878-?		4E-7				Illumina [9560910] (imputed)	N
893	chr21	40465533	40465534	rs2836878	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.2	NR	rs2836878-G	0.73	7E-53	(EA)	1.25304		Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.2	NR	rs2836878-G	0.73	5E-15	(EA)	1.114705	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q22.2	intergenic	rs2836878-G	0.733	5E-48		1.18	[1.142-1.219]	Affymetrix, Illumina [1230000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	21300955	Dehghan A	2011-02-07	Circulation	Meta-analysis of genome-wide association studies in >80 000 subjects identifies multiple loci for C-reactive protein levels.	C-reactive protein levels	63,678 European ancestry individuals 1,792 Erasmus Rucphen individuals, 715 Orcadian individuals	16,540 European ancestry individuals	21q22.2	PSMG1	rs2836878-G	NR	2E-7		0.032	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q22.2	intergenic	rs2836878-G	0.74	2E-22		1.25	[1.20-1.32]	Affymetrix, Illumina [~ 1100000] (imputed)	N
893	chr21	40465533	40465534	rs2836878	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	21q22.2	PSMG1	rs2836878-G	NR	1E-8		1.27	[NR]	Illumina [266047]	N
893	chr21	40465533	40465534	rs2836878	18758464	Kugathasan S	2008-08-31	Nat Genet	Loci on 20q13 and 21q22 are associated with pediatric-onset inflammatory bowel disease.	Inflammatory bowel disease	1,011 European ancestry cases, 4,250 European ancestry controls	1,922 European ancestry cases, 14,124 European ancestry controls	21q22.2	PSMG1	rs2836878-?	0.72	4E-12		1.41	[1.08-1.84]	Illumina [NR]	N
893	chr21	40465900	40465901	rs4817987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q22.2		rs4817987-?	NR	7E-17				NR [~ 8900000] (imputed)	N
893	chr21	40466298	40466299	rs2836881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	21q22.2		rs2836881-T	NR	6E-32		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
893	chr21	40466467	40466468	rs9808651	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		21q22.2	ETS2, PSMG1	rs9808651-?	NR	5E-16		0.0093	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
893	chr21	40466467	40466468	rs9808651	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	21q22.2	PSMG1	rs9808651-A	0.27	3E-20		0.0095	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
893	chr21	40466569	40466570	rs2836882	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	21q22.2	ETS2, PSMG1	rs2836882-G	0.73	1E-8		5.67	z-score increase	Affymetrix [4311822] (imputed)	N
893	chr21	40466569	40466570	rs2836882	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.2	intergenic	rs2836882-A		2E-8		0.01	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
893	chr21	40466569	40466570	rs2836882	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	21q22.2	NR	rs2836882-G	0.733323	6E-45		0.0323208	[0.028-0.037] unit increase	NR [NR]	N
893	chr21	40466569	40466570	rs2836882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	21q22.2	intergenic	rs2836882-A	0.267	2E-9		0.02407757	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40466569	40466570	rs2836882	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	21q22.2	PSMG1	rs2836882-A	0.27	5E-8				Illumina [7347414] (imputed)	N
893	chr21	40466743	40466744	rs2836883	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	21q22.2	NR	rs2836883-A	0.2574	8E-7		0.6721	[0.5738-0.7872]	Illumina [4495750] (imputed)	N
893	chr21	40466743	40466744	rs2836883	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	21q22.2	chr21q22	rs2836883-A	NR	1E-12		0.6387	NR	Illumina [up to 4495750] (imputed)	N
893	chr21	40466743	40466744	rs2836883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.2		rs2836883-A	0.266682	4E-13		0.018189982	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
893	chr21	40466743	40466744	rs2836883	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	21q22.2	PSMG1	rs2836883-G	0.74	4E-13		1.23	[1.17-1.31]	Affymetrix, Illumina [7891602] (imputed)	N
893	chr21	40466743	40466744	rs2836883	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.2	NR	rs2836883-?	NR	3E-48	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
893	chr21	40466743	40466744	rs2836883	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	21q22.2	Intergenic	rs2836883-G	0.734	7E-17		1.18		Illumina [128935]	N
893	chr21	40466743	40466744	rs2836883	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	21q22.2	Intergenic	rs2836883-G	0.734	2E-14	(EA)	1.19		Illumina [128935]	N
893	chr21	40466743	40466744	rs2836883	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	21q22.2	PSMG1	rs2836883-G	0.728	3E-17		1.28	[1.21-1.36]	Illumina [140322] (imputed)	N
893	chr21	40467642	40467643	rs2836884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	21q22.2		rs2836884-C	NR	8E-22		0.0233	[0.019-0.028] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
893	chr21	40467642	40467643	rs2836884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	21q22.2		rs2836884-C	0.276134	1E-11		0.016806828	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr21	40467642	40467643	rs2836884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.2		rs2836884-C	0.276141	1E-13		0.01860894	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
893	chr21	40467642	40467643	rs2836884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.2		rs2836884-?	NR	1E-16				NR [~ 8900000] (imputed)	N
893	chr21	40467642	40467643	rs2836884	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	21q22.2	intergenic	rs2836884-C	0.2771	7E-9		0.02328377	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
893	chr21	40468837	40468838	rs4817988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.2		rs4817988-A	NR	7E-11		0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
893	chr21	40468837	40468838	rs4817988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs4817988-A	0.259088	2E-13				Affymetrix, Illumina [24653286] (imputed)	N
893	chr21	40468837	40468838	rs4817988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.2	NR	rs4817988-A	0.274347	5E-14		0.015718	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
893	chr21	40468837	40468838	rs4817988	30498034	Terao C	2018-11-29	Proc Natl Acad Sci U S A	Genetic determinants and an epistasis of LILRA3 and HLA-B*52 in Takayasu arteritis.	Takayasu arteritis	411 Japanese ancestry cases, 2,158 Japanese ancestry controls	219 Japanese ancestry cases, 3,770 Japanese ancestry controls	21q22.2	intergenic	rs4817988-G	0.80	3E-10		1.77	[1.48-2.11]	Illumina [5878075] (imputed)	N
893	chr21	40469519	40469520	rs378108	21743469	Evans DM	2011-07-10	Nat Genet	Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.	Ankylosing spondylitis	3,023 European ancestry cases, 8,779 European ancestry controls	2,111 European ancestry cases, 4,483 European ancestry controls	21q22.2	intergenic	rs378108-G	0.48	2E-11				Illumina [2223620] (imputed)	N
893	chr21	40484877	40484878	rs139791219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.2		rs139791219-?	NR	4E-9				NR [~ 8900000] (imputed)	N
893	chr21	40491319	40491320	rs75884327	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	21q22.2	RPL23AP12, PCBP2P1, PSMG1, BRWD1	rs75884327-A	NR	3E-6	(daytime resting)	1.082	[0.63-1.53] unit decrease	Affymetrix [7141204] (imputed)	N
894	chr21	40505568	40505569	rs2836909	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	21q22.2	PSMG1, BRWD1	rs2836909-G		9E-9		0.0053	[0.0035-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
894	chr21	40516069	40516070	rs2836921	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	21q22.2	NR	rs2836921-G	0.305169	5E-8		0.037141208	[0.024-0.05] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
894	chr21	40516069	40516070	rs2836921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	21q22.2	Intergenic	rs2836921-A	0.3564	4E-8		0.0163	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
894	chr21	40516069	40516070	rs2836921	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	21q22.2	NR	rs2836921-A	NR	7E-12		6.867	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
894	chr21	40518748	40518749	rs117160808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs117160808-?	NR	1E-9				NR [~ 8900000] (imputed)	N
894	chr21	40520782	40520783	rs7281463	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	21q22.2	NR	rs7281463-C	0.413	3E-8		0.013677968	[0.0088-0.0185] unit increase	NR [~ 10000000] (imputed)	N
894	chr21	40520782	40520783	rs7281463	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	21q22.2	NR	rs7281463-C	0.413	2E-10		0.0141604	[0.0098-0.0185] unit increase	NR [9732723] (imputed)	N
894	chr21	40550059	40550060	rs80051150	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	21q22.2	NR	rs80051150-C		2E-6		0.197	[0.12-0.28] SD units decrease	NR [10700000] (imputed)	N
894	chr21	40553343	40553344	rs34705151	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.2	PSMG1	rs34705151-?	NR	1E-10		0.018814627	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
894	chr21	40553844	40553845	rs6517522	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	21q22.2	PSMG1	rs6517522-T	0.501864	1E-10		0.0129131	[0.009-0.0168] unit increase	Affymetrix [NR] (imputed)	N
894	chr21	40555560	40555561	rs117143374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to omega-3 fatty acids	115,006 European ancestry individuals	NA	21q22.2		rs117143374-T	0.85775	3E-8		0.0318136	[0.021-0.043] unit decrease	NR [11722792] (imputed)	N
894	chr21	40555560	40555561	rs117143374	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-3 fatty acid levels	115,006 European ancestry individuals	NA	21q22.2		rs117143374-T	0.85775	1E-9		0.03454	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
894	chr21	40555560	40555561	rs117143374	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	21q22.2		rs117143374-C	NR	9E-13		0.0221	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
894	chr21	40555560	40555561	rs117143374	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	21q22.2	PSMG1, BRWD1	rs117143374-T	0.86	6E-11		6.55	z-score increase	Affymetrix [4312306] (imputed)	N
894	chr21	40555560	40555561	rs117143374	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset voice breaking)	11,334 European ancestry late onset individuals, 172,138 European ancestry average onset individuals	NA	21q22.2		rs117143374-C	NR	1E-7		0.00596301	[0.0037-0.0082] years increase	NR [7400000] (imputed)	N
894	chr21	40569507	40569508	rs62222988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	21q22.2		rs62222988-T	0.626127	1E-8		0.0239997	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
894	chr21	40569507	40569508	rs62222988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	21q22.2		rs62222988-T	0.626127	2E-8		0.0237748	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
894	chr21	40569778	40569779	rs2150410	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	21q22.2	BRWD1	rs2150410-?	NR	4E-6	(Hyperthymic)	1.69	[NR] unit decrease	Affymetrix [703012]	N
894	chr21	40574304	40574305	rs2183573	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.2	BRWD1	rs2183573-A	0.4103	5E-19		0.0182	[0.014-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
894	chr21	40574304	40574305	rs2183573	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.2	BRWD1	rs2183573-A	0.4103	2E-14		0.0158	[0.012-0.02] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
894	chr21	40585330	40585352	rs142696785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	21q22.2	BRWD1	rs142696785-A	0.43677	4E-9		0.013407649	[0.0089-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr21	40585632	40585633	rs9981884	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	21q22.2		rs9981884-A	0.4894	8E-9		0.95227635	[0.936543139-0.968273872]	Affymetrix, Illumina [NR] (imputed)	N
894	chr21	40588818	40588819	rs4818005	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q22.2	NR	rs4818005-A	0.581	1E-18		0.00983799	[0.0077-0.012] unit decrease	NR [9732723] (imputed)	N
894	chr21	40588818	40588819	rs4818005	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	21q22.2	NR	rs4818005-A	0.581	4E-14		0.020430982	[0.015-0.026] unit decrease	NR [~ 10000000] (imputed)	N
894	chr21	40588818	40588819	rs4818005	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	21q22.2	NR	rs4818005-A	0.583	3E-10		0.00936897	[0.0064-0.0123] unit increase	NR [9732723] (imputed)	N
894	chr21	40598408	40598409	rs8131862	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.2	DSCR2	rs8131862-?	NR	9E-6	(kynurenine)	1.4335351	[0.8-2.07] unit increase	Affymetrix [at least 2500000] (imputed)	N
894	chr21	40604428	40604429	rs2836950	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	21q22.2	BRWD1	rs2836950-C	0.64	6E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
894	chr21	40611441	40611442	rs4818008	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	21q22.2	NR	rs4818008-T	0.644899	3E-8		0.00460281	[0.0029-0.0063] unit increase	Affymetrix [16582909] (imputed)	N
894	chr21	40611441	40611442	rs4818008	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	21q22.2	NR	rs4818008-T	0.644899	2E-11		0.00644411	[0.0045-0.0084] unit increase	Affymetrix [16582965] (imputed)	N
894	chr21	40611441	40611442	rs4818008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	21q22.2		rs4818008-?	NR	9E-27				NR [~ 8900000] (imputed)	N
894	chr21	40627019	40627020	rs2836961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	21q22.2	NR	rs2836961-C	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
894	chr21	40628764	40628765	rs1541102	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q22.2	BRWD1	rs1541102-T	NR	4E-8		5.481	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
895	chr21	40632346	40632347	rs76464837	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	21q22.2	BRWD1	rs76464837-T	0.877251	4E-13		0.0042774	[0.0031-0.0054] unit increase	Affymetrix [13995440] (imputed)	N
895	chr21	40639449	40639450	rs113617088	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	21q22.2	BRWD1	rs113617088-A		3E-8		1.031	[NR]	Affymetrix [up to 79000000] (imputed)	N
895	chr21	40641176	40641176	rs375909440	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	21q22.2	BRWD1	rs375909440-A	0.957366	3E-8		0.0322398	[0.021-0.044] unit decrease	NR [16516521] (imputed)	N
895	chr21	40644109	40644110	rs145104523	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	21q22.2	NR	rs145104523-T	NR	7E-10		6.165	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
895	chr21	40644109	40644110	rs145104523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	21q22.2	BRWD1	rs145104523-T	NR	5E-8		5.456	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
895	chr21	40644169	40644170	rs8134638	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		21q22.2	BRWD1	rs8134638-T	0.624363	4E-8		0.00779677	[0.005-0.0106] unit decrease	Affymetrix [12370749]	N
895	chr21	40644169	40644170	rs8134638	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.2	NR	rs8134638-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
895	chr21	40644169	40644170	rs8134638	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.2		rs8134638-?	NR	4E-11				NR [~ 8900000] (imputed)	N
895	chr21	40644169	40644170	rs8134638	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.2	NA	rs8134638-T	0.6273	2E-11		0.0133	[0.0094-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
895	chr21	40657822	40657823	rs73209858	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 9, facial height related to vertical position of nasion)	2,187 European ancestry individuals	NA	21q22.2	NR	rs73209858-C	0.008941	4E-6		0.7312	[0.42-1.04] unit increase	Illumina [10677593] (imputed)	N
895	chr21	40663180	40663181	rs2836974	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	21q22.2	BRWD1	rs2836974-?	NR	9E-7		0.0281	[0.017-0.039] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
895	chr21	40663252	40663253	rs77217252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	21q22.2		rs77217252-?	NR	1E-8				NR [~ 8900000] (imputed)	N
895	chr21	40663254	40663255	rs78175438	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	21q22.2	HMGN1	rs78175438-T	0.8713	8E-9		0.018702744	[0.012-0.025] unit decrease	Affymetrix [11514654] (imputed)	N
895	chr21	40665295	40665296	rs9982111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	21q22.2		rs9982111-A	NR	3E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
895	chr21	40678967	40678968	rs9975562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	21q22.2		rs9975562-T	NR	2E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
895	chr21	40683093	40683094	rs180840563	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	21q22.2	NR	rs180840563-T		2E-6		0.2002	[0.12-0.28] SD units increase	NR [10700000] (imputed)	N
895	chr21	40683739	40683740	rs62223042	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	21q22.2	NR	rs62223042-G	0.37473	1E-9		0.0153338	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
895	chr21	40686520	40686521	rs1888488	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	21q22.2	BRWD1	rs1888488-C	0.43471	2E-16		0.0173094	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
895	chr21	40690560	40690561	rs4818017	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q22.2		rs4818017-G	0.439	6E-12		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	6E-9		0.0240003	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	3E-9		0.0246407	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	4E-9		0.0243212	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	1E-8		0.0235505	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	1E-8		0.0240143	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	3E-8		0.0231916	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	1E-8		0.023955	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small LDL	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	1E-9		0.0255328	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
895	chr21	40693374	40693374	rs36100583	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	21q22.2		rs36100583-G	0.497811	4E-8		0.0230822	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
895	chr21	40702785	40702786	rs147412694	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Percentage of invited food questionnaires completed	300,639 European ancestry individuals	NA	21q22.2	NR	rs147412694-G	0.85	1E-9		0.77	[0.52-1.02] unit decrease	Affymetrix [39302896] (imputed)	N
895	chr21	40702785	40702786	rs147412694	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.2		rs147412694-A	0.149734	2E-11		0.02146997	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr21	40702785	40702786	rs147412694	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	21q22.2		rs147412694-G	0.85	3E-9		0.017	[0.011-0.023] unit decrease	Affymetrix [up to 90000000] (imputed)	N
895	chr21	40709170	40709171	rs4818025	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	21q22.2	HMGN1	rs4818025-A	0.427695	9E-11		0.0137317	[0.0096-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
895	chr21	40709959	40709960	rs1963676	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		21q22.2	HMGN1	rs1963676-C	NR	2E-9		0.01088	[0.0068-0.015] nmol/l decrease	NR [19000000] (imputed)	N
895	chr21	40709959	40709960	rs1963676	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	21q22.2	NR	rs1963676-C	0.435396	2E-22		0.0189758	[0.015-0.023] unit decrease	Affymetrix [15000001]	N
895	chr21	40709959	40709960	rs1963676	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	21q22.2	LCA5L	rs1963676-?	NR	1E-13		0.0193	[0.015-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
895	chr21	40712366	40712367	rs726046	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs726046-?	NR	3E-13				NR [~ 8900000] (imputed)	N
895	chr21	40740905	40740906	rs28550626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q22.2		rs28550626-?	NR	6E-10				NR [~ 8900000] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.2	RNF6P1	rs9974653-C	0.317335	6E-18		0.021006789	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	21q22.2	RNF6P1	rs9974653-C	0.317342	2E-11		0.01640262	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9974653-C	0.277522	1E-24				Affymetrix, Illumina [24588908] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q22.2	NR	rs9974653-C	0.315683	1E-26		0.02118	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.2	NR	rs9974653-A	0.680939	7E-13				Affymetrix, Illumina [17210439] (imputed)	N
895	chr21	40741845	40741846	rs9974653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	21q22.2	NR	rs9974653-A	0.682596	1E-15		0.016698	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
895	chr21	40741845	40741846	rs9974653	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	21q22.2	RNF6P1	rs9974653-C	0.3182	8E-14		0.02953061	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
895	chr21	40757972	40757973	rs2244352	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Non-accommodative esotropia	826 European ancestry cases, 2,991 European ancestry controls	689 European ancestry cases, 1,448 European ancestry controls	21q22.2	WRB	rs2244352-T	0.31	1E-10		1.41	NR	Illumina [6470615] (imputed)	N
895	chr21	40757972	40757973	rs2244352	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Esotropia	224 European ancestry accommodative cases, 826 European ancestry non-accommodative cases, 3,740 European ancestry controls	66 European ancestry accommodative cases, 689 European ancestry non-accommodative cases, 1,712 European ancestry controls	21q22.2	NR	rs2244352-?	NR	2E-10				Illumina [6470615] (imputed)	N
896	chr21	40770537	40770538	rs111949013	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	21q22.2	WRB	rs111949013-G	0.2477	1E-11		0.02932996	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
896	chr21	40775411	40775412	rs7281561	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	21q22.2		rs7281561-T	NR	3E-6		1.2897	[0.76-1.82] unit increase	Illumina [NR] (imputed)	N
896	chr21	40789683	40789684	rs116694748	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	21q22.2	LCA5L	rs116694748-G	0.0644	9E-6		1.966	[1.459-2.649]	Affymetrix, Illumina [14074516] (imputed)	N
896	chr21	40817701	40817702	rs2277788	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	21q22.2	LCA5L	rs2277788-C	0.1044	1E-9		0.1721	[0.12-0.23] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
896	chr21	40836873	40836874	rs77231055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs77231055-?	NR	3E-8				NR [~ 8900000] (imputed)	N
896	chr21	40841564	40841565	rs11356888	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	21q22.2	NR	rs11356888-TA		7E-6		0.0948	[0.053-0.136] SD units decrease	NR [10700000] (imputed)	N
897	chr21	40908951	40908952	rs4818048	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	21q22.2	LOC729056, B3GALT5	rs4818048-C	NR	4E-7		0.895	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
897	chr21	40948545	40948546	rs555963	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.2	B3GALT5	rs555963-?	NR	8E-6	(PC 34:2)	0.15929365	[0.089-0.229] unit increase	Affymetrix [at least 2500000] (imputed)	N
897	chr21	41020544	41020545	rs79978308	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	21q22.2	B3GALT5	rs79978308-T	0.03	5E-6		1.7857143	[1.55-2.02]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
897	chr21	41021751	41021752	rs10854398	21041247	Perlis RH	2010-11-01	Am J Psychiatry	Genome-wide association study of suicide attempts in mood disorder patients.	Suicide risk	3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases	2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases	21q22.2	IGSF5, B3GALT5	rs10854398-C	NR	6E-6		1.178		Affymetrix [1922309] (imputed)	N
898	chr21	41047875	41047876	rs7278671	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	21q22.2	B3GALT5	rs7278671-G	0.49	9E-6		1.0752687	[1.04-1.11]	NR [~ 55000000] (imputed)	N
898	chr21	41049344	41049345	rs34846236	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	21q22.2	PCP4	rs34846236-G	0.48	4E-8				NR [> 9500000] (imputed)	N
898	chr21	41110281	41110282	rs4816642	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	21q22.2	IGSF5	rs4816642-?	NR	3E-6		0.133	[0.074-0.192] unit decrease	Illumina [6319684] (imputed)	N
898	chr21	41123300	41123301	rs1735151	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	Hypertension	4,069 African American cases, 3,848 African American controls	1,372 African American cases, 1,482 African American controls	21q22.2	IGSF5	rs1735151-T	0.58	9E-6		1.16	[1.09-1.24]	Affymetrix [~ 2740000] (imputed)	N
898	chr21	41146068	41146069	rs2837204	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	21q22.2	IGSF5	rs2837204-T	NR	9E-6		0.0265	[0.015-0.038] unit decrease	Illumina [NR] (imputed)	N
899	chr21	41180075	41180076	rs2410182	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	21q22.2	IGSF5	rs2410182-A	0.4	7E-7	(Oz alcohol/week)	0.452	[0.27-0.63] unit decrease	Affymetrix [2500000] (imputed)	N
899	chr21	41221255	41221256	rs2837253	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Systolic blood pressure (alcohol consumption interaction)	up to 6,882 European ancestry individuals	NA	21q22.2	IGSF5, PCP4	rs2837253-A	0.3	8E-7	(drinks/week)	0.182	[0.11-0.25] unit increase	Affymetrix [2500000] (imputed)	N
899	chr21	41243472	41243473	rs58127813	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Melanoma	3,122 White British ancestry cases, 271,708 White British ancestry controls	NA	21q22.2		rs58127813-?	NR	2E-6		1.15084	[1.09-1.21]	NR [674885]	N
899	chr21	41282697	41282698	rs3819595	28437668	Jung J	2017-04-14	Psychiatry Res	Genome-wide association study of treatment response to venlafaxine XR in generalized anxiety disorder.	Venlafaxine response in generalised anxiety disorder (responders vs non-responders after 12 weeks)	98 European ancestry cases and controls	NA	21q22.2	PCP4	rs3819595-A	0.35	4E-6	(HAM-A)	6.45		Illumina [266820] (imputed)	N
900	chr21	41344910	41344911	rs1734920	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	21q22.2	NR	rs1734920-?		3E-6	(females)			Illumina [1211988] (imputed)	N
900	chr21	41415043	41415044	rs9981861	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	21q22.2	NR	rs9981861-C		9E-6		0.0722	[0.04-0.104] SD units increase	NR [10700000] (imputed)	N
900	chr21	41415043	41415044	rs9981861	21079520	Sato Y	2010-11-12	J Thorac Oncol	Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.	Non-small cell lung cancer (survival)	105 East Asian ancestry cases	NA	21q22.2	DSCAM	rs9981861-G	NR	4E-6		1.33	[0.82-2.15] (AG)	Illumina [109365]	N
900	chr21	41417114	41417115	rs2410205	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	21q22.2	DSCAM	rs2410205-T	NR	2E-8		0.0076973	[0.005-0.0104] unit decrease	Affymetrix [18485882] (imputed)	N
901	chr21	41427167	41427168	rs2837398	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		21q22.2	DSCAM	rs2837398-A	0.595776	5E-9		0.00819988	[0.0055-0.0109] unit decrease	Affymetrix [12370749]	N
901	chr21	41427167	41427168	rs2837398	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.2	NR	rs2837398-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
901	chr21	41427167	41427168	rs2837398	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.2	NA	rs2837398-A	0.6075	1E-10		0.0112	[0.0079-0.0145] unit decrease	NR [~ 27400000] (imputed)	N
901	chr21	41431873	41431874	rs2249498	30958311	Tao F	2019-04-03	J Neuromuscul Dis	Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.	Foot plantar flexion strength in Charcot-Marie-Tooth disease 1A	136 European ancestry severe cases, 276 European ancestry mild cases	NA	21q22.2	NR	rs2249498-?		5E-7				Illumina [600000]	N
901	chr21	41431873	41431874	rs2249498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.2		rs2249498-?	NR	5E-10				NR [~ 8900000] (imputed)	N
901	chr21	41444517	41444518	rs9974083	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	21q22.2		rs9974083-?	NR	4E-6		1.73	[1.34-2.24]	Illumina [6778521] (imputed)	N
901	chr21	41460411	41460412	rs7282525	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.2		rs7282525-?	NR	1E-11				NR [~ 8900000] (imputed)	N
901	chr21	41464280	41464281	rs2410212	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	21q22.2	DSCAM	rs2410212-?	NR	2E-6		3.17		Illumina [6778521] (imputed)	N
901	chr21	41464433	41464434	rs2205129	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	21q22.2	DSCAM	rs2205129-A	0.316141	1E-8		5.67	z score decrease	NR [10847151] (imputed)	N
901	chr21	41479293	41479294	rs2222997	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DSCAM	rs2222997-?	NR	9E-10	(female)	2.91086	[NR] unit decrease	Affymetrix [NR] (imputed)	N
902	chr21	41610795	41610796	rs1882758	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	21q22.2		rs1882758-C	0.3975	5E-7		0.6509	[0.5507-0.7694]	Affymetrix [7975321] (imputed)	N
902	chr21	41667377	41667378	rs2837554	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	21q22.2	DSCAM	rs2837554-G	0.701	3E-7		1.16	[1.10-1.24]	Illumina [1438399] (imputed)	N
902	chr21	41669299	41669300	rs13051169	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	25,501 European ancestry women	NA	21q22.2	DSCAM	rs13051169-T	NR	2E-7		1.72923	[1.08-2.38] unit increase	NR [9955952] (imputed)	N
903	chr21	41688766	41688767	rs1882760	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	21q22.2	DSCAM	rs1882760-A	0.4759	7E-6		0.1481	[0.084-0.213] unit increase	NR [NR] (imputed)	N
903	chr21	41688766	41688767	rs1882760	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia	11,361 European ancestry female cases, 18,119 European ancestry female controls, 20,206 European ancestry male cases, 19,375 European ancestry male controls, 686 East Asian ancestry female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry male cases, 1,476 East Asian ancestry male controls	NA	21q22.2	DSCAM	rs1882760-A	0.4808	6E-6	(female)	0.1106	[0.063-0.158] unit increase	NR [NR] (imputed)	N
903	chr21	41702946	41702947	rs727333	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	21q22.2	DSCAM	rs727333-C	0.62	4E-14		3.846154	[2.78-5.56]	Affymetrix [508192]	N
903	chr21	41702946	41702947	rs727333	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	21q22.2	NR	rs727333-?	0.081	1E-6		1.542	[1.295-1.837] unit increase	Illumina [563945]	N
903	chr21	41725624	41725625	rs41395652	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.2	NR	rs41395652-T	0.03659	1E-8	(TKT)	0.4395	NR unit increase	Illumina [1671387] (imputed)	N
903	chr21	41748058	41748059	rs2837588	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	21q22.2	DSCAM	rs2837588-C	0.26	7E-6	(female)	1.45	[0.82-2.08] unit increase	Illumina [6380737] (imputed)	N
904	chr21	41886582	41886583	rs9980603	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	21q22.2	DSCAM	rs9980603-?	0.58	3E-7	(Dichotomous)	1.53	[NR]	Illumina [471581]	N
904	chr21	41895941	41895942	rs2837671	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.2	PCP4	rs2837671-?	NR	9E-6	(TAG 44:1)	0.2572213	[0.14-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
904	chr21	41902730	41902731	rs62225548	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	21q22.2	NR	rs62225548-?		6E-7		3.693	[2.32-5.07] unit decrease	Illumina [~ 4900000] (imputed)	N
904	chr21	41903850	41903851	rs191124187	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	21q22.2	DSCAM	rs191124187-C	0.01	3E-6		10.71	[3.95-29.03]	Affymetrix, Illumina [up to 7729175] (imputed)	N
904	chr21	41910361	41910362	rs2837693	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.2	PCP4	rs2837693-?	NR	2E-6	(TAG 48:4)	0.2769407	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
904	chr21	41915358	41915359	rs7277023	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q22.2	DSCAM	rs7277023-?		5E-8				Affymetrix, Illumina [NR] (imputed)	N
904	chr21	41939568	41939569	rs455489	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	21q22.2	DSCAM	rs455489-C	0.023266666666666668	3E-9		6.7566	[4.53-8.99] unit increase	Affymetrix [NR] (imputed)	N
905	chr21	41993706	41993707	rs3804024	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.2	DSCAM	rs3804024-G	0.035	9E-7	(Arm span )	0.03	[NR] cm increase	Illumina [899892]	N
905	chr21	41993706	41993707	rs3804024	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.2	DSCAM	rs3804024-G	0.035	3E-6	(Height z-score )	0.03	[NR] SD increase	Illumina [899892]	N
905	chr21	41996684	41996684	rs774787160	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	14,007 European ancestry male cases, 107,048 European ancestry male controls	NA	21q22.2	DSCAM	rs774787160-A	0.73	1E-8		0.0983	unit increase	Affymetrix, Illumina [9464541] (imputed)	N
905	chr21	42002475	42002476	rs11702781	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,316 Gambian ancestry cases, 1,537 Chinese ancestry controls, 1,382 Gambian ancestry controls	NA	21q22.2	NR	rs11702781-?	NR	9E-6				Illumina [7333833] (imputed)	N
905	chr21	42006440	42006441	rs9974899	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.2		rs9974899-T	0.2538	1E-8		0.0093	[0.0062-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
905	chr21	42051159	42051160	rs56076602	33445220	Li Y	2021-01-14	Am J Transplant	Donor genetic variants as risk factors for thrombosis after liver transplantation: A genome-wide association study.	Thrombosis in response to liver transplant	42 European ancestry pediatric cases, 268 European ancestry pediatric controls	64 European ancestry adult cases, 711 European ancestry adult controls	21q22.2	NR	rs56076602-G	0.07774	9E-6		2.7811	NR	Illumina [5393447] (imputed)	N
906	chr21	42120402	42120403	rs117342730	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.2	DSCAM	rs117342730-T	0.971875	5E-6	(DSCAM, 9175_48_3)	0.33789855	[0.19-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
906	chr21	42174959	42174960	rs2837828	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	21q22.2	DSCAM	rs2837828-?	NR	1E-6				Illumina [874956]	N
906	chr21	42202430	42202431	rs4818184	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	21q22.2	NR	rs4818184-A	0.13	7E-6	(15-18 months)	0.1	[0.057-0.143] unit decrease	Illumina [2449665] (imputed)	N
907	chr21	42216954	42216955	rs2837857	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	21q22.2	DSCAM	rs2837857-T	0.7	2E-6		3.3333	[NR]	Affymetrix [up to 4467279] (imputed)	N
907	chr21	42248823	42248824	rs182479819	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	21q22.2	NR	rs182479819-T		6E-6		0.2653	[0.15-0.38] SD units increase	NR [10700000] (imputed)	N
907	chr21	42260054	42260055	rs2837862	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	21q22.2	Intergenic	rs2837862-?	NR	7E-6		1.589	[NR]	Affymetrix [492217] (imputed)	N
907	chr21	42262057	42262058	rs979461	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q22.2	DSCAM	rs979461-G	0.749373	6E-18		0.00524898	[0.0041-0.0064] unit increase	Affymetrix [13995440] (imputed)	N
908	chr21	42356798	42356799	rs140447961	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	21q22.2	DSCAM	rs140447961-C	0.0115700366143207	2E-6	(G_Intestinibacter_HB)	0.305323	[0.18-0.43] unit increase	Illumina [7711310] (imputed)	N
908	chr21	42362417	42362418	rs77741094	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD38- B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	21q22.2		rs77741094-G	0.01258	3E-8		0.627	[0.41-0.85] unit decrease	Illumina [18238287] (imputed)	N
908	chr21	42386673	42386674	rs2837900	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Alcohol consumption (max-drinks)	1,045 Thai ancestry individuals	NA	21q22.2	intergenic	rs2837900-C	0.555	6E-6		0.3101	[0.18-0.44] unit increase	Illumina [at least 4683137] (imputed)	N
908	chr21	42387102	42387103	rs141045115	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		21q22.2	LINC00323	rs141045115-G	0.971	6E-7		0.043	[0.025-0.061] dioptres decrease	NR [5900115] (imputed)	N
908	chr21	42448474	42448475	rs576307136	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	21q22.2	LINC00323	rs576307136-A	0.0053	5E-6		0.3124	[0.18-0.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
909	chr21	42471627	42471628	rs16998084	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (immigration/crime)	9,617 European ancestry individuals	NA	21q22.2	intergenic	rs16998084-G	NR	5E-6		0.4	[0.23-0.57] unit decrease	Illumina [628922]	N
909	chr21	42511917	42511918	rs2837960	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	21q22.2	NR	rs2837960-G	0.17	2E-6		1.05	[0.93-1.20]	Affymetrix [469557]	N
909	chr21	42583737	42583738	rs6517656	23903356	Hayes MG	2013-07-31	Diabetes	Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies.	Glycemic traits (pregnancy)	1,367 European ancestry individuals, 817 Hispanic individuals, 1,075 Afro-Caribbean individuals, 1,178 Thai ancestry individuals	2,798 European ancestry individuals, 228 French Canadian founder population individuals	21q22.3	BACE2, PLAC4, C21orf130, FAM3B	rs6517656-G	0.839	6E-16	(FCP)	0.0402	[NR] unit increase	Illumina [up to 945994] (imputed)	N
910	chr21	42616004	42616005	rs2837981	30004843	Ge S	2018-07-01	OMICS	Type 2 Diabetes Mellitus: Integrative Analysis of Multiomics Data for Biomarker Discovery.	Elevated fasting plasma glucose	76 Chinese ancestry cases, 435 Chinese ancestry controls	NA	21q22.3	BACE2	rs2837981-A	0.09043	6E-6		2.158	[1.824-2.492]	Illumina [69485]	N
910	chr21	42616730	42616731	rs2837982	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	21q22.3	BACE2	rs2837982-G	0.31	9E-6		1.3029	[NR]	Illumina [421909] (imputed)	N
910	chr21	42616756	42616757	rs2837983	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	21q22.3	Intergenic	rs2837983-?		8E-6		1.4484357	[NR]	Affymetrix [492217] (imputed)	N
910	chr21	42619748	42619749	rs914187	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.3	BACE2	rs914187-C	0.595	6E-6		0.014	[0.0076-0.0194] kg/m2 increase	Affymetrix, Illumina [2550021]	N
910	chr21	42620519	42620520	rs2837992	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	21q22.3		rs2837992-T	0.3881	1E-7		37.564407	z score increase	NR [6814003]	N
910	chr21	42620519	42620520	rs2837992	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	21q22.3	NA	rs2837992-T	0.3703	2E-10		0.0112	[0.0077-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
910	chr21	42620519	42620520	rs2837992	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	21q22.3	Intergenic	rs2837992-T	0.3785	5E-15	(MTAG)	0.0133	[0.01-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
910	chr21	42622656	42622657	rs960231	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	21q22.3	Intergenic	rs960231-C	0.646	2E-9	(MTAG)	0.0143	[0.0096-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
910	chr21	42629894	42629895	rs4818225	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	21q22.3	intergenic	rs4818225-A	0.338	6E-6		0.021	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr21	42630530	42630531	rs2837999	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs2837999-A	0.3227	2E-19	(conditional-joint)	0.0135	[0.011-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
910	chr21	42633064	42633065	rs4818226	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs4818226-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
910	chr21	42633064	42633065	rs4818226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.3	NA	rs4818226-A	0.3082	2E-11		0.0123	[0.0088-0.0158] unit decrease	NR [~ 27400000] (imputed)	N
910	chr21	42651480	42651481	rs1810868	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	21q22.3	BACE2	rs1810868-?	NR	6E-9		0.011782898	[0.0078-0.0158] unit decrease	NR [7306098]	N
910	chr21	42653120	42653121	rs1964926	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	21q22.3		rs1964926-G	NR	3E-8		0.0119	[0.0076-0.0162] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
910	chr21	42653120	42653121	rs1964926	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		21q22.3	BACE2	rs1964926-A	0.354052	1E-8		0.00823118	[0.0054-0.0111] unit decrease	Affymetrix [12370749]	N
910	chr21	42653236	42653237	rs1964927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	21q22.3		rs1964927-?	NR	5E-10				NR [~ 8900000] (imputed)	N
910	chr21	42653236	42653237	rs1964927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.3		rs1964927-?	NR	4E-10				NR [~ 8900000] (imputed)	N
910	chr21	42653236	42653237	rs1964927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.3	Intergenic	rs1964927-A	0.3599	7E-21	(MTAG)	0.0128	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
910	chr21	42653566	42653567	rs2838006	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs2838006-T	0.3597	1E-19		0.0132	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
910	chr21	42688930	42688931	rs66482320	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs66482320-C	0.888	3E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
910	chr21	42694666	42694667	rs2838011	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	NR	rs2838011-C	0.071	3E-50	(Protein FAM3B, FAM3B.9177.6.3)	0.7	[0.6-0.8] unit increase	Affymetrix [10572788] (imputed)	N
910	chr21	42694666	42694667	rs2838011	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	NR	rs2838011-C	0.071	3E-32	(Protein FAM3B, FAM3B.5618.50.3)	0.56	[0.46-0.66] unit increase	Affymetrix [10572788] (imputed)	N
910	chr21	42694869	42694870	rs2838012	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,368 Icelandic ancestry individuals	NA	21q22.3		rs2838012-A	0.04783	2E-42		0.592723	[0.51-0.68] unit decrease	Illumina [7506463] (imputed)	N
910	chr21	42694869	42694870	rs2838012	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	NR	rs2838012-A	0.056	8E-26	(Protein FAM3B, FAM3B.5618.50.3)	0.55	[0.45-0.65] unit decrease	Affymetrix [10572788] (imputed)	N
910	chr21	42694869	42694870	rs2838012	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	NR	rs2838012-A	0.056	3E-30	(Protein FAM3B, FAM3B.9177.6.3)	0.6	[0.5-0.7] unit decrease	Affymetrix [10572788] (imputed)	N
910	chr21	42697713	42697714	rs2838014	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,368 Icelandic ancestry individuals	NA	21q22.3		rs2838014-G	0.1524	5E-35		0.321067	[0.27-0.37] unit increase	Illumina [7506463] (imputed)	N
910	chr21	42698906	42698907	rs441810	24941225	Liang Y	2014-06-18	PLoS One	Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.	Elevated serum carcinoembryonic antigen levels	1,999 Chinese ancestry individuals	NA	21q22.3	FAM3B	rs441810-?		2E-8				Illumina [709211] (imputed)	N
910	chr21	42698906	42698907	rs441810	23300138	He M	2013-01-07	Gut	A genome wide association study of genetic loci that influence tumour biomarkers cancer antigen 19-9, carcinoembryonic antigen and ? fetoprotein and their associations with cancer risk.	Tumor biomarkers	3,451 Han Chinese ancestry individuals	10,326 Chinese ancestry individuals	21q22.3	FAM3B	rs441810-G	0.24	3E-22	(CEA)	0.069	[0.040-0.098] ng/ml increase	Affymetrix, Illumina [NR] (imputed)	N
910	chr21	42714087	42714088	rs4305350	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		FAM3B	rs4305350-?	NR	8E-6	(male)	1.71907	[NR] unit increase	Affymetrix [NR] (imputed)	N
910	chr21	42717160	42717161	rs58958361	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	FAM3B	rs58958361-C	0.9540625	3E-43	(FAM3B, 9177_6_3)	0.7915406	[0.68-0.9] unit increase	Illumina [> 1000000] (imputed)	N
910	chr21	42718261	42718262	rs57529409	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3B	5,368 Icelandic ancestry individuals	NA	21q22.3		rs57529409-T	0.04473	2E-100		0.944725	[0.86-1.03] unit decrease	Illumina [7506463] (imputed)	N
910	chr21	42718261	42718262	rs57529409	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	FAM3B	rs57529409-T	0.049	2E-52	(Protein FAM3B, FAM3B.5618.50.3)	0.87	[0.75-0.99] unit decrease	Affymetrix [10572788] (imputed)	N
910	chr21	42721868	42721869	rs73226194	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	FAM3B	rs73226194-T	0.04	4E-78	(Protein FAM3B, FAM3B.9177.6.3)	1.15	[1.03-1.27] unit decrease	Affymetrix [10572788] (imputed)	N
911	chr21	42730744	42730745	rs117149680	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Large artery stroke	350 Indian ancestry cases, 2,154 Indian ancestry controls	NA	21q22.3		rs117149680-?	NR	6E-6		1.1388043	[1.07669429614778-1.20449731610213]	Illumina [up to 7827597] (imputed)	N
911	chr21	42740487	42740488	rs78736162	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	21q22.3	MX2	rs78736162-?	0.042	3E-7		2.79	[NR]	Illumina [3922209] (imputed)	N
911	chr21	42743326	42743327	rs443099	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	21q22.3		rs443099-T	NR	2E-11		1.1308379	NR	Affymetrix [7846216] (imputed)	N
911	chr21	42743326	42743327	rs443099	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	21q22.3	MX2	rs443099-G	0.412565	1E-17				Affymetrix, Illumina [NR] (imputed)	N
911	chr21	42743495	42743496	rs408825	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	21q22.3	MX2	rs408825-T	0.5868	1E-32		1.1249859	NR	Affymetrix, Illumina [NR] (imputed)	N
911	chr21	42745413	42745414	rs416981	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	21q22.3	MX2	rs416981-?	NR	4E-10				Affymetrix, Illumina [7850345] (imputed)	N
911	chr21	42746080	42746081	rs45430	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	21q22.3	MX2	rs45430-T	0.66	3E-8		1.1235955	[1.08-1.16]	Illumina [at least 560000] (imputed)	N
911	chr21	42746080	42746081	rs45430	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	21q22.3	MX2	rs45430-?	0.61	3E-9		1.14	[1.09-1.18]	Illumina [594997]	N
911	chr21	42767784	42767785	rs74688837	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	21q22.3	MX2	rs74688837-T	0.032	9E-7		0.17	NR unit increase	Illumina [6417232] (imputed)	N
911	chr21	42793790	42793791	rs459482	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.3	NR	rs459482-C	0.594937723887375	2E-6	(IGP1)	0.1509	[0.089-0.213] unit decrease	Illumina [~ 2500000] (imputed)	N
911	chr21	42793790	42793791	rs459482	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.3	NR	rs459482-C	0.594327337431694	3E-7	(IGP41)	0.1627	[0.1-0.22] unit decrease	Illumina [~ 2500000] (imputed)	N
911	chr21	42835493	42835494	rs460976	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	21q22.3	NR	rs460976-?	NR	4E-6				Affymetrix [NR]	N
911	chr21	42835493	42835494	rs460976	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	21q22.3	NR	rs460976-?	NR	1E-8				Affymetrix [NR]	N
911	chr21	42835993	42835994	rs11088550	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	21q22.3	NR	rs11088550-?	NR	5E-6		0.0756	[0.043-0.108] unit increase	Illumina [~ 7800000] (imputed)	N
911	chr21	42846534	42846535	rs183026840	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	21q22.3	NR	rs183026840-?	NR	9E-6	(Native Hawaiian)	0.8436	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
912	chr21	42866106	42866107	rs2838042	34518958	Sanders AR	2021-09-13	Arch Sex Behav	Genome-Wide Linkage and Association Study of Childhood Gender Nonconformity in Males.	Childhood gender nonconformity	409 European ancestry concordant male sibling pairs	NA	21q22.3		rs2838042-T	0.767	6E-7		0.074	[0.045-0.103] unit decrease	Affymetrix [6030650] (imputed)	N
912	chr21	42866331	42866332	rs61735792	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	21q22.3	NR	rs61735792-A	NR	8E-15		1.261	[1.19-1.34]	Affymetrix, Illumina [29235255] (imputed)	N
912	chr21	42882461	42882462	rs9978557	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	21q22.3	NR	rs9978557-C	0.905108994	5E-9		1.1990082	[1.13-1.27]	Affymetrix, Illumina [20400945] (imputed)	N
912	chr21	42882461	42882462	rs9978557	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	21q22.3	NR	rs9978557-C	NR	4E-11		1.089	[1.06-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
912	chr21	42882670	42882671	rs55953905	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	21q22.3		rs55953905-T	NR	2E-15		0.0205	[0.015-0.026] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
912	chr21	42882670	42882671	rs55953905	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q22.3	TMPRSS2	rs55953905-C	0.754338	3E-16		0.00488426	[0.0037-0.0061] unit increase	Affymetrix [13995440] (imputed)	N
912	chr21	42882670	42882671	rs55953905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q22.3	NR	rs55953905-T	NR	1E-16		0.0233	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
912	chr21	42893907	42893908	rs8134657	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	21q22.3		rs8134657-?	NR	2E-8		0.837283	[0.78-0.9]	NR [680312]	N
912	chr21	42896304	42896305	rs11911661	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	21q22.3		rs11911661-A	NR	8E-10		1.1016855	NR	Affymetrix [7846216] (imputed)	N
912	chr21	42901420	42901421	rs1041449	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	21q22.3	TMPRSS2	rs1041449-G	0.44	3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 16852405] (imputed)	N
912	chr21	42901420	42901421	rs1041449	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	21q22.3	TMPRSS2	rs1041449-G	0.44	3E-7	(EA)	1.06	[1.04-1.09]	Affymetrix, Illumina [up to 16852405] (imputed)	N
912	chr21	42912590	42912591	rs74576407	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	21q22.3	intergenic	rs74576407-A	NR	9E-6				Illumina [up to 11995908] (imputed)	N
912	chr21	42920121	42920122	rs77812224	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA			rs77812224-?	NR	5E-9				Affymetrix [NR] (imputed)	N
912	chr21	42933707	42933708	rs2838065	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-3 levels	843 Finnish ancestry individuals	NA	21q22.3	NR	rs2838065-G		8E-6		0.2168	[0.12-0.31] SD units increase	NR [10700000] (imputed)	N
913	chr21	43024339	43024340	rs9975090	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	21q22.3	LINC00111	rs9975090-G	0.437	6E-6		0.07	[0.11-0.04] unit decrease	Affymetrix [7435577] (imputed)	N
913	chr21	43036968	43036969	rs9977018	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	21q22.3	TMPRSS2	rs9977018-?	0.05	2E-9				Illumina [859311]	N
913	chr21	43048484	43048485	rs187652497	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	21q22.3	LINC00111	rs187652497-C	0.007	1E-7		2.23	[1.66-3.00]	Illumina [1438399] (imputed)	N
913	chr21	43086069	43086070	rs2849691	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	21q22.3		rs2849691-?	NR	6E-13		0.92036	[0.9-0.94]	NR [685523]	N
913	chr21	43086943	43086944	rs2776348	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	21q22.3	LINC00111	rs2776348-A	0.65599	2E-19		1.0869565	[1.06-1.1]	Affymetrix [7600000] (imputed)	N
913	chr21	43089016	43089017	rs2776353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	21q22.3		rs2776353-T	NR	5E-14		0.0776	[0.057-0.098] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
913	chr21	43089016	43089017	rs2776353	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	21q22.3	LINC00111	rs2776353-A	0.678026	2E-26		1.1	[1.08-1.12]	Affymetrix, Illumina [up to 9061544] (imputed)	N
913	chr21	43089016	43089017	rs2776353	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		21q22.3	NR	rs2776353-T	NR	2E-6		1.1039	[1.06017-1.14944]	Affymetrix [5734850] (imputed)	N
913	chr21	43089016	43089017	rs2776353	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	21q22.3	LINC00111	rs2776353-A	0.67	2E-12		1.1	[NR]	Illumina [at least 560000] (imputed)	N
913	chr21	43089085	43089086	rs2849699	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	21q22.3	LINC00111	rs2849699-A	0.225923869937888	1E-18		0.10548821	[0.082-0.129] unit decrease	Affymetrix [7260263] (imputed)	N
913	chr21	43092200	43092201	rs2838088	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel)	57 Japanese ancestry cases, 63 Japanese ancestry controls	NA	21q22.3	NCRNA00111	rs2838088-A	0.12	1E-6	(Dominant)	4.48	[2.32-8.66]	Illumina [555600]	N
914	chr21	43180217	43180218	rs117871010	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RIPK4	rs117871010-?	NR	2E-8		2.42644	[NR] unit decrease	Affymetrix [NR] (imputed)	N
914	chr21	43185764	43185765	rs4919944	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	PRDM15	rs4919944-?	NR	8E-6	(TAG 52:3)	0.17073138	[0.096-0.246] unit decrease	Affymetrix [at least 2500000] (imputed)	N
914	chr21	43196051	43196052	rs111476780	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	21q22.3	RIPK4	rs111476780-A	0.0113	3E-6		3.687	[2.137-6.361]	Affymetrix, Illumina [14074516] (imputed)	N
914	chr21	43218519	43218520	rs1054761	32824824	Diaz-Pena R	2020-08-18	J Pers Med	Amerindian Ancestry Influences Genetic Susceptibility to Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	21q22.3	PRDM15	rs1054761-T	NR	9E-7		0.44	NR	Illumina [754159] (imputed)	N
914	chr21	43218519	43218520	rs1054761	32222710	Hosgood Iii HD	2020-03-27	Respiration	PRDM15 Is Associated with Risk of Chronic Obstructive Pulmonary Disease in a Rural Population in Chile.	Chronic obstructive pulmonary disease	214 Chilean cases, 193 Chilean controls	NA	21q22.3	PRDM15	rs1054761-T	NR	2E-7		2.2336385	[1.64-3.04]	Illumina [455564] (imputed)	N
914	chr21	43221110	43221111	rs9983923	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.3	NR	rs9983923-A	0.06446	8E-9	(ANXA2)	0.1474	NR unit increase	Illumina [1671387] (imputed)	N
914	chr21	43223695	43223696	rs77634221	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.3	NR	rs77634221-A	0.01045	3E-9	(ATOX1)	0.02363	NR unit increase	Illumina [1671387] (imputed)	N
914	chr21	43227914	43227915	rs7279297	19340012	Nan H	2009-04-02	J Invest Dermatol	Genome-wide association study of tanning phenotype in a population of European ancestry.	Tanning	2,287 European ancestry female individuals	870 European ancestry female individuals	21q22.3	PRDM15	rs7279297-G	NR	3E-6		0.12	[0.06-0.18] tanning ability score decrease	Illumina [528173]	N
914	chr21	43236480	43236481	rs4075970	29296746	Ma Q	2017-06-19	Blood Adv	Genetic variants in ADAMTS13 as well as smoking are major determinants of plasma ADAMTS13 levels.	ADAMTS13 levels	3,238 European ancestry individuals	NA	21q22.3	PRDM15	rs4075970-?		7E-9		2.4	[1.62-3.18] % increase	Illumina [5821939] (imputed)	N
915	chr21	43275494	43275495	rs915832	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (placlitaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	21q22.3	PRDM15	rs915832-?	NR	7E-6				Affymetrix, Illumina [~ 1300000]	N
915	chr21	43277792	43277793	rs7281687	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Deep white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	21q22.3	PRDM15	rs7281687-T	0.2711	6E-6		0.0277	[0.016-0.04] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
915	chr21	43286351	43286352	rs2839398	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	21q22.3	PRDM15	rs2839398-?	NR	5E-6		1.23	[NR]	Illumina [2500000] (imputed)	N
915	chr21	43287048	43287049	rs113092074	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	21q22.3	NA	rs113092074-T	0.1435	2E-8	(Female)	1.061	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
915	chr21	43304265	43304266	rs116376114	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	LDL cholesterol x physical activity interaction (2df test)	7,260 African American inactive individuals, 12,761 African American active individuals, 2,740 Asian ancestry inactive individuals, 3,615 Asian ancestry active individuals, 22,378 European ancestry inactive individuals, 55,310 European ancestry active individuals, 2,163 Hispanic or Latin American inactive individuals, 3,461 Hispanic or Latin American active individuals	571 African American inactive individuals, 1,521 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,495 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals,  33,796 European ancestry inactive individuals, 50,812 European ancestry active individuals, 2,578 Hispanic inactive individuals, 8,661 Hispanic active individuals	21q22.3	NR	rs116376114-T	0.9727	2E-8	(African)			Affymetrix, Illumina [at least 2500000] (imputed)	N
915	chr21	43319736	43319737	rs2839417	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	541 Japanese ancestry women	NA	21q22.3	C2CD2	rs2839417-G	0.28	6E-8		0.25	[0.16-0.34] unit increase	Illumina [545605]	N
915	chr21	43319736	43319737	rs2839417	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	21q22.3	C2CD2	rs2839417-G	0.28	8E-6		0.151	[0.084-0.218] unit increase	Illumina [6380737] (imputed)	N
915	chr21	43343509	43343510	rs451390	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	21q22.3	C2CD2	rs451390-G	0.85	2E-7		4.5455	[NR]	Affymetrix [up to 4467279] (imputed)	N
915	chr21	43353369	43353369	rs34078516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	21q22.3		rs34078516-GT	NR	8E-9		0.0153	[0.01-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
915	chr21	43353380	43353380	rs398121667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	21q22.3	C2CD2	rs398121667-GT	0.299398	6E-12		0.017861888	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr21	43353380	43353380	rs398121667	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	21q22.3	C2CD2	rs398121667-GT	0.299407	6E-11		0.017023139	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
915	chr21	43353609	43353610	rs12482500	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	21q22.3	Intergenic	rs12482500-?		6E-6		1.365	[NR]	Affymetrix [492217] (imputed)	N
915	chr21	43364056	43364057	rs62216679	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	21q22.3	C2CD2	rs62216679-A	0.0147227040602965	9E-6	(G_Aestuariispira_RNT)	1.04449	[0.58-1.51] unit increase	Illumina [7711310] (imputed)	N
915	chr21	43372218	43372219	rs12185851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	21q22.3	NR	rs12185851-C	0.231746	7E-9		0.00874017	[0.0057-0.0117] unit increase	Affymetrix [16578495] (imputed)	N
915	chr21	43372218	43372219	rs12185851	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	21q22.3	NR	rs12185851-C	0.23146699999999998	3E-11		0.0214051	[0.015-0.028] unit increase	Affymetrix [16580851] (imputed)	N
915	chr21	43372555	43372556	rs12185822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs12185822-A	0.174262	5E-12				Affymetrix, Illumina [24588908] (imputed)	N
915	chr21	43372555	43372556	rs12185822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	21q22.3	NR	rs12185822-A	0.211429	7E-15		0.017786	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
916	chr21	43421113	43421114	rs8133949	25637336	Chan JP	2015-02-01	Age (Dordr)	Genetics of hand grip strength in mid to late life.	Hand grip strength	2,088 European ancestry individuals	541 European ancestry individuals	21q22.3	ZNF295	rs8133949-T	NR	6E-7	(Model 1 - age,sex)	1.142	[0.71-1.58] unit decrease	Affymetrix [at least 549281] (imputed)	N
916	chr21	43442990	43442991	rs118131263	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q22.3	NR	rs118131263-T	NR	3E-6		0.3613	[0.21-0.51] unit increase	Illumina [11133794] (imputed)	N
916	chr21	43443497	43443498	rs2839440	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	21q22.3	C21orf121	rs2839440-?	NR	1E-6	(Afro-Caribbean)	5.31	[2.70-10.42]	Illumina [2485249] (imputed)	N
916	chr21	43465830	43465831	rs150797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs150797-G	0.394144	9E-11				Affymetrix, Illumina [23472807] (imputed)	N
916	chr21	43469569	43469570	rs118133708	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder	13,393 European ancestry cases, 9,487 European ancestry controls	NA	21q22.3	NR	rs118133708-T	0.0131438	7E-6		1.127	[1.07-1.18]	Affymetrix [7791636] (imputed)	N
916	chr21	43472147	43472148	rs220249	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.3	UMODL1	rs220249-A	0.4342	2E-9		0.1588	[0.11-0.21] mmHg increase	Affymetrix [NR] (imputed)	N
916	chr21	43482045	43482046	rs220262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	21q22.3	UMODL1	rs220262-A	0.481851	3E-14		0.01692036	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr21	43482045	43482046	rs220262	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q22.3	UMODL1	rs220262-A	0.481854	5E-14		0.016731976	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr21	43482045	43482046	rs220262	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	21q22.3	NR	rs220262-?		6E-7	(PCB157)	0.22	[0.14-0.3] unit decrease	Illumina [8736858] (imputed)	N
916	chr21	43502761	43502762	rs220299	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.3	UMODL1	rs220299-G	0.373	4E-7	(HRmax )	0.05	[NR] bpm increase	Illumina [899892]	N
916	chr21	43513479	43513480	rs1475911	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	21q22.3	NR	rs1475911-C	0.154651563028953	9E-6	(IGP63)	0.2012	[0.11-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
917	chr21	43527133	43527134	rs1993364	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	21q22.3		rs1993364-C	0.27	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
917	chr21	43568111	43568112	rs62215138	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	21q22.3	UMODL1	rs62215138-T	0.092	2E-6		1.55	[1.292 - 1.86]	Illumina [5398302] (imputed)	N
917	chr21	43581307	43581308	rs220193	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	21q22.3	UMODL1	rs220193-A	0.225307	4E-11		0.020584	[0.014-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
917	chr21	43586698	43586699	rs220324	28000841	Baek SH	2016-12-14	Mol Med Rep	Genome-wide association scans for idiopathic osteonecrosis of the femoral head in a Korean population.	Idiopathic osteonecrosis of the femoral head	217 Korean ancestry cases, 217 Korean ancestry controls	NA	21q22.3	UMODL1, ABCG1	rs220324-?	NR	2E-7		2.857143	[1.92-4.35]	Affymetrix [509886]	N
917	chr21	43599171	43599172	rs112861654	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	21q22.3	NR	rs112861654-G	NR	2E-7		0.2765	[0.17-0.38] SD units increase	NR [10700000] (imputed)	N
917	chr21	43622266	43622267	rs4148087	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Eating disorder in bipolar disorder	184 European ancestry cases, 2,006 European ancestry controls	NA	21q22.3	ABCG1	rs4148087-A	0.13	4E-7		2.0	[NR]	Affymetrix [703012]	N
918	chr21	43650775	43650776	rs4148112	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	21q22.3	ABCG1	rs4148112-?	NR	5E-7				Illumina [859311]	N
918	chr21	43707100	43707101	rs425215	20585627	Eriksson N	2010-06-24	PLoS Genet	Web-based, participant-driven studies yield novel genetic associations for common traits.	Common traits (Other)	9,126 European ancestry individuals	NA	21q22.3	NR	rs425215-?	NR	8E-7	(optimism)			Illumina [535076]	N
918	chr21	43710908	43710909	rs914189	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	21q22.3	ABCG1	rs914189-?		1E-7				Illumina [479403]	N
918	chr21	43718791	43718792	rs3746915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	21q22.3		rs3746915-G	NR	3E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
918	chr21	43718791	43718792	rs3746915	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	21q22.3	ABCG1	rs3746915-A	0.419058	2E-8		0.0108977	[0.0071-0.0147] unit decrease	Affymetrix [NR] (imputed)	N
918	chr21	43731404	43731405	rs225439	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	21q22.3	NR	rs225439-A	NR	2E-6		0.01218	[0.0072-0.0172] unit decrease	Illumina [541614]	N
918	chr21	43732827	43732828	rs2236705	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Leg total mass	2,294 White British ancestry female individuals	NA	21q22.3		rs2236705-A	NR	4E-9		1.13	kg increase	NR [6137607] (imputed)	N
918	chr21	43732827	43732828	rs2236705	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Leg lean mass	2,294 White British ancestry female individuals	NA	21q22.3		rs2236705-A	NR	3E-8		465.92	g increase	NR [6137607] (imputed)	N
918	chr21	43743263	43743264	rs13046698	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	21q22.3	TFF3	rs13046698-C	NR	8E-6		0.43512085	[0.24-0.63] unit decrease	Illumina [> 6200000] (imputed)	N
919	chr21	43778894	43778895	rs1547374	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	21q22.3	TFF1	rs1547374-A	NR	4E-13		1.27	[1.19-1.35]	Affymetrix [666141]	N
919	chr21	43786185	43786186	rs2839488	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	21q22.3		rs2839488-C	NR	5E-6		1.2	[1.11-1.29]	Illumina [7591411] (imputed)	N
919	chr21	43787037	43787038	rs3761376	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFF1	5,368 Icelandic ancestry individuals	NA	21q22.3		rs3761376-A	0.2393	1E-75		0.395023	[0.35-0.44] unit decrease	Illumina [7506463] (imputed)	N
919	chr21	43787037	43787038	rs3761376	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	TFF1	rs3761376-G	0.75359375	6E-42	(TFF1, 9185_15_3)	0.37729666	[0.32-0.43] unit increase	Illumina [> 1000000] (imputed)	N
919	chr21	43787037	43787038	rs3761376	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	TFF1	rs3761376-A	0.242	4E-14	(Trefoil factor 1, TFF1.9185.15.3)	0.22	[0.16-0.28] unit decrease	Affymetrix [10572788] (imputed)	N
919	chr21	43792093	43792094	rs35447393	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	21q22.3	TMPRSS3	rs35447393-A	NR	4E-6		0.507945	[0.29-0.72] unit decrease	Illumina [> 6200000] (imputed)	N
919	chr21	43809151	43809152	rs727503493	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	21q22.3	TMPRSS3	rs727503493-T	0.07	8E-8	(additive)	1.49	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
919	chr21	43809151	43809152	rs727503493	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	21q22.3	TMPRSS3	rs727503493-T	0.07	8E-8	(additive)	1.49	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
919	chr21	43819633	43819634	rs118088914	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	21q22.3	UBASH3A	rs118088914-T	0.0261463619141511	4E-6		0.0079442	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
919	chr21	43825356	43825357	rs11203202	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	21q22.3	UBASH3A	rs11203202-G	0.33	1E-15		1.16		Illumina [135870]	N
919	chr21	43825721	43825722	rs9981624	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	21q22.3	UBASH3A	rs9981624-C	0.334	2E-12		1.184		Illumina [252970]	N
919	chr21	43834853	43834854	rs34544259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	21q22.3		rs34544259-G	NR	7E-10		0.1406	[0.096-0.185] unit increase	Affymetrix, Illumina [25841587] (imputed)	N
919	chr21	43836185	43836186	rs11203203	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	21q22.3	UBASH3A	rs11203203-A	0.35	9E-10		1.35	[1.22-1.48]	Illumina [7068382] (imputed)	N
919	chr21	43836185	43836186	rs11203203	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	21q22.3	UBASH3A	rs11203203-A	NR	1E-8				Illumina [472854]	N
919	chr21	43836185	43836186	rs11203203	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	21q22.3	UBASH3A	rs11203203-A	0.37	4E-6		1.11	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
919	chr21	43836185	43836186	rs11203203	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	21q22.3	UBASH3A	rs11203203-A	0.373	1E-9		1.27	[1.18-1.38]	Illumina [520460]	N
919	chr21	43836185	43836186	rs11203203	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	21q22.3	UBASH3A	rs11203203-?	NR	2E-9				Affymetrix, Illumina [841622] (imputed)	N
919	chr21	43836389	43836390	rs9976767	18840781	Grant SF	2008-10-07	Diabetes	Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.	Type 1 diabetes	563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios	3,303 European ancestry cases, 4,673 European ancestry controls	21q22.3	UBASH3A	rs9976767-C	NR	2E-8		1.16	[1.10-1.22]	Illumina [up to 1000000]	N
919	chr21	43841327	43841328	rs3788013	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	21q22.3	UBASH3A	rs3788013-A	NR	1E-7		1.1	[NR]	Affymetrix, Illumina [NR]	N
919	chr21	43850712	43850713	rs12483051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.3	UBASH3A	rs12483051-G	0.137049	9E-11		0.020965371	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr21	43850712	43850713	rs12483051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.3	UBASH3A	rs12483051-G	0.137065	1E-10		0.02072667	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
919	chr21	43850712	43850713	rs12483051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs12483051-G	0.114819	6E-12				Affymetrix, Illumina [19872809] (imputed)	N
919	chr21	43850712	43850713	rs12483051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.3	NR	rs12483051-G	0.137538	1E-15		0.021635	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
919	chr21	43850712	43850713	rs12483051	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.3		rs12483051-?	NR	1E-15				NR [~ 8900000] (imputed)	N
919	chr21	43851827	43851828	rs12482904	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	21q22.3	UBASH3A	rs12482904-A	0.2235	6E-29		1.354	[1.28-1.43]	Illumina [8966411] (imputed)	N
919	chr21	43852036	43852037	rs12482947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	21q22.3		rs12482947-C	NR	9E-10		0.0543	[0.037-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
919	chr21	43852036	43852037	rs12482947	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	21q22.3		rs12482947-C	NR	1E-8		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
919	chr21	43852036	43852037	rs12482947	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	21q22.3	UBASH3A	rs12482947-T	0.398927	3E-10		0.059588805	[0.041-0.078] unit decrease	Affymetrix [7288503] (imputed)	N
919	chr21	43852036	43852037	rs12482947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	21q22.3		rs12482947-?	NR	4E-9				NR [~ 8900000] (imputed)	N
919	chr21	43852036	43852037	rs12482947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	21q22.3		rs12482947-?	NR	1E-7				NR [~ 8900000] (imputed)	N
919	chr21	43855066	43855067	rs1893592	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	21q22.3		rs1893592-A	NR	2E-13		1.1	[1.07-1.13]	NR [13810676] (imputed)	N
919	chr21	43855066	43855067	rs1893592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q22.3	UBASH3A	rs1893592-C	0.299548	2E-10		0.015413175	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
919	chr21	43855066	43855067	rs1893592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	21q22.3	NR	rs1893592-C	0.295994	2E-12		0.014656	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
919	chr21	43855066	43855067	rs1893592	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	21q22.3	UBASH3A	rs1893592-?	0.7	2E-9		1.1625204		Illumina [252970]	N
919	chr21	43855066	43855067	rs1893592	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	21q22.3	UBASH3A	rs1893592-?		9E-11		1.1420285		Illumina [252970]	N
919	chr21	43855066	43855067	rs1893592	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	21q22.3	UBASH3A	rs1893592-C	NA	5E-12				Illumina [252970]	N
919	chr21	43855066	43855067	rs1893592	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.3	UBASH3A	rs1893592-A	NR	6E-12		0.105098	[0.076-0.135] unit increase	Illumina [8380626] (imputed)	N
919	chr21	43855066	43855067	rs1893592	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.3	UBASH3A	rs1893592-A	0.72	1E-8	(EA)	0.1011	[0.067-0.136] unit increase	Illumina [8380626] (imputed)	N
919	chr21	43855066	43855067	rs1893592	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	21q22.3	UBASH3A	rs1893592-A	0.73	2E-12		1.22	[1.15-1.29]	Affymetrix, Illumina [7891602] (imputed)	N
919	chr21	43855066	43855067	rs1893592	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	21q22.3	UBASH3A	rs1893592-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
919	chr21	43855066	43855067	rs1893592	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	21q22.3	UBASH3A	rs1893592-?	NR	8E-11		0.91		Illumina [109572]	N
919	chr21	43855066	43855067	rs1893592	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	21q22.3	UBASH3A	rs1893592-A	0.72	8E-11		1.1235955	[1.09-1.16]	Illumina [133816] (imputed)	N
919	chr21	43855066	43855067	rs1893592	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	21q22.3	UBASH3A	rs1893592-A	0.73	7E-12		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 9739303] (imputed)	N
919	chr21	43855066	43855067	rs1893592	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	21q22.3	UBASH3A	rs1893592-?	0.718	3E-9		1.1363636		Illumina [139553]	N
919	chr21	43856121	43856122	rs111164030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.3		rs111164030-C	NR	8E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
919	chr21	43856592	43856593	rs12626388	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	21q22.3	UBASH3A	rs12626388-T	0.15	1E-8				NR [> 9500000] (imputed)	N
919	chr21	43891086	43891087	rs9978405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.3		rs9978405-?	NR	3E-8				NR [~ 8900000] (imputed)	N
920	chr21	43966970	43966971	rs228081	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.3	Intergenic	rs228081-T	0.6075	1E-8	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
920	chr21	44001794	44001795	rs400625	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Posterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	21q22.3	NR	rs400625-?		5E-6				Illumina [4322238] (imputed)	N
921	chr21	44041364	44041365	rs2850133	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	21q22.3	NR	rs2850133-?	NR	9E-9		0.2018	NR	Illumina [802276]	N
921	chr21	44043340	44043341	rs412519	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	21q22.3	NR	rs412519-?	NR	3E-6		4.5	[3.49-5.79]	Illumina [539000] (imputed)	N
921	chr21	44057706	44057707	rs139489372	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	21q22.3	NR	rs139489372-?	NR	5E-6		13.675	NR unit increase	Affymetrix [at least 600000] (imputed)	N
921	chr21	44061211	44061212	rs189677472	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	21q22.3	Intergenic	rs189677472-A	NR	1E-7	(between families)	5.324	unit decrease	Affymetrix [up to 15107142] (imputed)	N
921	chr21	44075276	44075277	rs115711179	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	21q22.3		rs115711179-T	0.03116	2E-6		2.059	[1.53199999999999-2.76899999999999]	Affymetrix [7975321] (imputed)	N
921	chr21	44136883	44136884	rs7275640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs7275640-A	0.661378	6E-13				Affymetrix, Illumina [24653286] (imputed)	N
921	chr21	44136883	44136884	rs7275640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	21q22.3	NR	rs7275640-A	0.595073	2E-14		0.015278	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
921	chr21	44136883	44136884	rs7275640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs7275640-A	0.658265	3E-14				Affymetrix, Illumina [24558453] (imputed)	N
921	chr21	44136883	44136884	rs7275640	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	21q22.3	NR	rs7275640-A	0.595078	4E-16		0.016206	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
921	chr21	44139647	44139647	rs11405520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.3		rs11405520-AG	NR	2E-8		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
921	chr21	44139647	44139647	rs11405520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.3		rs11405520-AG	NR	5E-10		0.0114	[0.0079-0.0149] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
921	chr21	44139647	44139647	rs11405520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.3	PDE9A	rs11405520-AG	0.594803	4E-12		0.015748397	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr21	44139647	44139647	rs11405520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.3	PDE9A	rs11405520-AG	0.594801	2E-13		0.016612077	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
921	chr21	44145906	44145907	rs8130944	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	21q22.3	PDE9A	rs8130944-G	NR	3E-6		0.120593	[0.07-0.171] unit increase	Illumina [7433384] (imputed)	N
921	chr21	44156768	44156769	rs9979235	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	21q22.3	intergenic	rs9979235-?	NR	6E-6	(FEV1/FVC decline in asthmatics)	0.6177	[0.35-0.88] unit decrease	Illumina [~ 2500000] (imputed)	N
922	chr21	44276431	44276432	rs370189685	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	21q22.3	WDR4	rs370189685-C	0.0014	7E-9		1.1757375	[0.78-1.57] mmol/L decrease	Illumina [24111857] (imputed)	N
922	chr21	44276431	44276432	rs370189685	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	21q22.3	WDR4	rs370189685-?	0.0014	3E-8	(Non diabetics)	1.1502396	[0.74-1.56] mmol/L decrease	Illumina [24111857] (imputed)	N
924	chr21	44436176	44436177	rs2839619	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	21q22.3	PKNOX1	rs2839619-G	0.40	8E-6	(total cholesterol)	0.13	[0.07-0.19] mmol/L increase	Illumina [316730]	N
924	chr21	44436176	44436177	rs2839619	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	21q22.3	PKNOX1	rs2839619-G	0.40	8E-6	(LDL cholesterol)	0.13	[0.08-0.18] mmol/L increase	Illumina [316730]	N
924	chr21	44445291	44445292	rs234720	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	21q22.3	PKNOX1	rs234720-?	NR	2E-7	(Digit Span Forward)			Illumina [up to 563855]	N
924	chr21	44448717	44448718	rs2839627	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	21q22.3	PKNOX1	rs2839627-T	0.11	6E-6	(speed factor)	0.27	[0.15-0.39] unit increase	Illumina [~ 610000]	N
924	chr21	44469062	44469063	rs1788493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q22.3	CBS	rs1788493-T	0.495315	2E-9		0.013321086	[0.009-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
924	chr21	44469062	44469063	rs1788493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q22.3	NR	rs1788493-T	0.499803	2E-11		0.013157	[0.0093-0.017] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
924	chr21	44472117	44472118	rs35990176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs35990176-C	0.46241	2E-11				Affymetrix, Illumina [24649327] (imputed)	N
924	chr21	44472117	44472118	rs35990176	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.3		rs35990176-?	NR	1E-7				NR [~ 8900000] (imputed)	N
924	chr21	44473445	44473446	rs706208	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs706208-G	0.446468	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
924	chr21	44477032	44477033	rs1005585	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	21q22.3	CBS	rs1005585-C	0.115	1E-15		0.29	[0.22-0.36] unit decrease	Affymetrix [339439]	N
924	chr21	44478496	44478497	rs6586282	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	21q22.3	CBS	rs6586282-C	0.837535	9E-21	(betaine)	0.286	[0.23-0.35] unit decrease	Illumina [13039987] (imputed)	N
924	chr21	44478496	44478497	rs6586282	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	21q22.3	CBS, PKNOX1, U2AF1, STAG3OS	rs6586282-T	0.17	4E-9				Affymetrix, Illumina [2379663] (imputed)	N
924	chr21	44478496	44478497	rs6586282	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Se levels)	5477 European ancestry individuals	NA	21q22.3	CBS	rs6586282-?	NR	5E-6		0.117	[0.068-0.166] unit increase	Illumina [> 2500000] (imputed)	N
924	chr21	44478496	44478497	rs6586282	20031578	Pare G	2009-04-01	Circ Cardiovasc Genet	Novel associations of CPS1, MUT, NOX4, and DPEP1 with plasma homocysteine in a healthy population: a genome-wide evaluation of 13 974 participants in the Women's Genome Health Study.	Homocysteine levels	13,974 European ancestry females	840 European ancestry females	21q22.3	CBS	rs6586282-?	0.18	3E-10	(WGHS)	0.03	[NR] unit decrease	Illumina [336469]	N
924	chr21	44482935	44482936	rs1789953	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	21q22.3	PKNOX1, U2AF1, CBS, WDR4	rs1789953-T	0.14	3E-8				Affymetrix, Illumina [2379663] (imputed)	N
924	chr21	44486963	44486964	rs234709	25343990	Cornelis MC	2014-10-24	Hum Mol Genet	Genome-wide association study of selenium concentrations.	Blood and toenail selenium levels	9,639 European ancestry individuals	NA	21q22.3	PKNOX1, U2AF1, CBS	rs234709-T	0.45	5E-9				Affymetrix, Illumina [2379663] (imputed)	N
924	chr21	44486963	44486964	rs234709	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	21q22.3	CBS	rs234709-T	0.45	4E-24		0.0718	[0.058-0.086] unit decrease	Affymetrix, Illumina [2090256] (imputed)	N
924	chr21	44487403	44487404	rs2851391	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	21q22.3	CBS	rs2851391-T	0.46	1E-11	(betaine)	0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
924	chr21	44487403	44487404	rs2851391	23824729	van Meurs JB	2013-07-03	Am J Clin Nutr	Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease.	Homocysteine levels	44,147 European ancestry individuals	NA	21q22.3	CBS	rs2851391-T	0.47	2E-12		0.056	[0.04-0.072] unit increase	Affymetrix, Illumina [2090256] (imputed)	N
924	chr21	44487403	44487404	rs2851391	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	21q22.3	CBS	rs2851391-G	0.365	4E-6	(Hcy )	0.02	[NR] umol/L increase	Illumina [899892]	N
924	chr21	44488032	44488033	rs234714	24651765	Williams SR	2014-03-20	PLoS Genet	Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.	Plasma homocysteine levels (post-methionine load test)	2,710 European and other ancestry individuals, 1,725 European ancestry individuals, 258 African ancestry individuals, 117 individuals	NA	21q22.3	CBS	rs234714-T	0.20	3E-26		0.404	[0.31-0.49] unit increase	Affymetrix, Illumina [up to 11000000] (imputed)	N
924	chr21	44510020	44510021	rs2839633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.3		rs2839633-?	NR	3E-9				NR [~ 8900000] (imputed)	N
924	chr21	44558686	44558687	rs11700536	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	21q22.3	NR	rs11700536-C		4E-6		0.1156	[0.067-0.165] SD units decrease	NR [10700000] (imputed)	N
925	chr21	44588756	44588757	rs7278468	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls	21q22.3	CRYAA	rs7278468-?	NR	3E-16		8.18	NR z score increase	Illumina [8500000] (imputed)	N
925	chr21	44593139	44593140	rs11911275	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	21q22.3	CRYAA	rs11911275-G	0.44	2E-9	(Random effect)	0.08	[0.021-0.139] unit increase	Illumina [4736131] (imputed)	N
925	chr21	44615871	44615872	rs67900830	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	21q22.3	intergenic	rs67900830-A	NR	4E-6		1.4705882	[NR]	Illumina [up to 9792010] (imputed)	N
925	chr21	44626738	44626739	rs75732647	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.3	NR	rs75732647-T	NR	2E-8		0.0785664	NR unit increase	NR [NR] (imputed)	N
925	chr21	44627023	44627024	rs77340799	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	21q22.3		rs77340799-?	NR	4E-31				NR [~ 8900000] (imputed)	N
925	chr21	44627879	44627879	rs112348497	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.3	NR	rs112348497-GC	NR	2E-9		0.0814921	NR unit increase	NR [NR] (imputed)	N
925	chr21	44629339	44629340	rs115557929	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	21q22.3	NR	rs115557929-T	0.0531031	1E-42		0.0944312	[0.081-0.108] unit increase	NR [19129689] (imputed)	N
926	chr21	44720383	44720384	rs76346476	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	21q22.3		rs76346476-A	NR	1E-8		0.0903	[0.059-0.121] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
926	chr21	44720383	44720384	rs76346476	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	21q22.3	LINC00322	rs76346476-A	0.037629	1E-8		0.090308696	[0.059-0.121] unit increase	Affymetrix [7288503] (imputed)	N
926	chr21	44720889	44720890	rs79094191	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	21q22.3	CRYAA, SIK1	rs79094191-T	0.96	4E-13		0.564	[0.41-0.72] unit decrease	Affymetrix [~ 9800000] (imputed)	N
926	chr21	44721026	44721027	rs112204826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.3	CRYAA, SIK1	rs112204826-C		5E-7		0.598	unit decrease	Affymetrix [at least 2696785] (imputed)	N
926	chr21	44721026	44721027	rs112204826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	21q22.3	CRYAA, SIK1	rs112204826-C		3E-8		0.395	unit decrease	Affymetrix [at least 2696785] (imputed)	N
926	chr21	44729622	44729623	rs574083674	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	21q22.3	LINC00322	rs574083674-A	0.0017	2E-6		0.9446	[0.56-1.33] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
926	chr21	44739047	44739048	rs2838255	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	CRYAA	rs2838255-?	NR	8E-7	(PC 38:3)	1.1770849	[0.71-1.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
926	chr21	44739047	44739048	rs2838255	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	CRYAA	rs2838255-?	NR	2E-7	(PC 38:2)	1.2483054	[0.78-1.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
926	chr21	44752679	44752680	rs631462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.3		rs631462-?	NR	5E-13				NR [~ 8900000] (imputed)	N
926	chr21	44752767	44752768	rs73220980	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	21q22.3	LINC00322	rs73220980-A	0.02766	3E-9		1.142	NR	Affymetrix [9154080] (imputed)	N
926	chr21	44759439	44759440	rs12627514	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	21q22.3	LINC00322	rs12627514-?	NR	3E-14				Affymetrix [up to 7325140] (imputed)	N
926	chr21	44759439	44759440	rs12627514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	21q22.3		rs12627514-?	NR	1E-11				NR [~ 8900000] (imputed)	N
926	chr21	44760602	44760603	rs12627651	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	21q22.3	CRYAA, SIK1	rs12627651-A	0.291	2E-9	(EA, initial)	0.528	[0.36-0.7] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
926	chr21	44760602	44760603	rs12627651	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	21q22.3	CRYAA, SIK1	rs12627651-A	0.291	2E-9	(EA, initial)	0.318	[0.21-0.42] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
926	chr21	44760602	44760603	rs12627651	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	21q22.3	CRYAA, SIK1	rs12627651-A	0.288	3E-14		0.3905	[0.29-0.49] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
926	chr21	44760602	44760603	rs12627651	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	21q22.3	CRYAA, SIK1	rs12627651-A	0.288	1E-11		0.2037	[0.14-0.26] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
926	chr21	44768561	44768562	rs643608	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	21q22.3	intergenic	rs643608-G	0.38	1E-6	(Steatosis)	0.74	[NR] unit increase	Illumina [324623]	N
926	chr21	44769675	44769676	rs762395	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	21q22.3	AP001046.5	rs762395-A	0.335664	2E-9		0.03852179	[0.026-0.051] unit decrease	Affymetrix [7288503] (imputed)	N
926	chr21	44779679	44779680	rs496300	20694148	Zabaneh D	2010-08-04	PLoS One	A genome-wide association study of the metabolic syndrome in Indian Asian men.	Metabolic syndrome	2,554 Indian Asian ancestry individuals	2,240 Indian Asian ancestry individuals	21q22.3	FLJ41733	rs496300-G	0.16	4E-7	(HDL)	0.03	[0.02-0.05] mmol/l increase	Illumina [308011]	N
926	chr21	44783286	44783287	rs622330	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	21q22.3		rs622330-G	0.512	4E-49	(EA)	0.111	[0.096-0.126] unit increase	Illumina [11532091] (imputed)	N
926	chr21	44793199	44793200	rs481767	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	21q22.3		rs481767-G	NR	8E-34				Illumina [11532091] (imputed)	N
926	chr21	44793447	44793448	rs672948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	21q22.3		rs672948-?	NR	3E-57				NR [~ 8900000] (imputed)	N
926	chr21	44793447	44793448	rs672948	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Red vs. brown/black hair color	15,731 British ancestry red hair individuals, 283,920 British ancestry brown or black hair individuals	NA	21q22.3	SIK1	rs672948-A	0.4145	1E-8		1.07	NR	Affymetrix [9154080] (imputed)	N
926	chr21	44793447	44793448	rs672948	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	21q22.3	SIK1	rs672948-A	0.4145	2E-15		1.063	NR	Affymetrix [9154080] (imputed)	N
927	chr21	44829594	44829595	rs137923903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	21q22.3		rs137923903-T	NR	5E-10		0.0611	[0.042-0.08] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
927	chr21	44829594	44829595	rs137923903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	21q22.3		rs137923903-T	NR	3E-10		0.063	[0.043-0.083] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
927	chr21	44829594	44829595	rs137923903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	21q22.3		rs137923903-T	NR	2E-8		0.0583	[0.038-0.079] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
927	chr21	44829594	44829595	rs137923903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.3		rs137923903-?	NR	8E-18				NR [~ 8900000] (imputed)	N
927	chr21	44829991	44829992	rs857551	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	21q22.3	SIK1	rs857551-A	NR	7E-7	(between families)	4.949	unit increase	Affymetrix [up to 15107142] (imputed)	N
927	chr21	44831989	44831990	rs183453668	33239672	Laisk T	2020-11-25	Nat Commun	The genetic architecture of sporadic and multiple consecutive miscarriage.	Multiple consecutive miscarriage	750 European ancestry cases, 150,215 European ancestry controls	NA	21q22.3	NR	rs183453668-A	0.005	3E-8		3.78	[2.44-5.85]	Affymetrix, Illumina [8956145] (imputed)	N
927	chr21	44841051	44841052	rs2006112	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	21q22.3		rs2006112-?	NR	3E-8				NR [~ 8900000] (imputed)	N
927	chr21	44846425	44846426	rs76081789	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	21q22.3	SIK1	rs76081789-T	0.94	1E-8		1.065	[1.04-1.09]	Affymetrix, Illumina [8307659] (imputed)	N
927	chr21	44848069	44848070	rs229347	33539531	Casares-Marfil D	2021-02-04	Clin Infect Dis	A genome-wide association study identifies novel susceptibility loci in chronic Chagas cardiomyopathy.	Trypanosoma cruzi infection	1,019 Colombian ancestry cases, 1,104 Colombian ancestry controls	NA	21q22.3		rs229347-A	0.6	9E-7		1.07	[1.04-1.1]	Illumina [7846902] (imputed)	N
927	chr21	44871147	44871148	rs55946466	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	21q22.3	NR	rs55946466-?	NR	1E-6		0.09581605	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
927	chr21	44927014	44927015	rs162375	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	21q22.3		rs162375-T	NR	7E-13		0.0172	[0.012-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
927	chr21	44935382	44935383	rs162366	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.3	HSF2BP	rs162366-A	0.4052	8E-13		0.2418	[0.18-0.31] mmHg decrease	Affymetrix [NR] (imputed)	N
927	chr21	44954521	44954522	rs162344	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	21q22.3		rs162344-?	NR	7E-8				NR [~ 8900000] (imputed)	N
927	chr21	44955402	44955403	rs229340	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	21q22.3	HSF2BP, MIR6070, RRP1B	rs229340-?	NR	2E-11				Affymetrix [up to 7325140] (imputed)	N
928	chr21	44979670	44979671	rs11701973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.3	HSF2BP	rs11701973-A	0.49379	3E-12		0.015758999	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
928	chr21	44989546	44989547	rs4818833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	21q22.3		rs4818833-?	NR	1E-10				NR [~ 8900000] (imputed)	N
928	chr21	44989546	44989547	rs4818833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	21q22.3		rs4818833-?	NR	9E-9				NR [~ 8900000] (imputed)	N
928	chr21	45006610	45006611	rs35123175	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	21q22.3	RRP1B	rs35123175-?	0.095811672	2E-7		0.2452	[0.15-0.34] unit decrease	Affymetrix [~ 9800000] (imputed)	N
928	chr21	45010317	45010318	rs60787346	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	21q22.3	HSF2BP	rs60787346-A	0.701	5E-6		0.032	[0.018-0.046] unit decrease	Affymetrix [7947838] (imputed)	N
928	chr21	45018282	45018282	rs397690986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.3	HSF2BP	rs397690986-GTT	0.561815	2E-18		0.0187923	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
928	chr21	45018282	45018282	rs397690986	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.3	HSF2BP	rs397690986-GTT	0.561802	6E-16		0.018042164	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
928	chr21	45052020	45052021	rs59177757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	21q22.3		rs59177757-A	NR	4E-12		0.0166	[0.012-0.021] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
928	chr21	45063846	45063847	rs8127297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.3	HSF2BP	rs8127297-A	0.58349	4E-9		0.013303269	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
928	chr21	45068946	45068947	rs35110281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	21q22.3	HSF2BP	rs35110281-A	0.5774	3E-10		0.02248817	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
928	chr21	45073774	45073775	rs4818857	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroid peroxidase levels	1,593 Croatian ancestry women, 1,025 Croatian ancestry men	NA	21q22.3	HSF2BP	rs4818857-G	NR	3E-6	(women)	0.207	[0.12-0.29] unit decrease	Illumina [5527232] (imputed)	N
928	chr21	45075581	45075582	rs2838338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs2838338-C	0.623266	5E-17				Affymetrix, Illumina [20825802] (imputed)	N
928	chr21	45075749	45075750	rs2838339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.3	NR	rs2838339-T	0.580472	6E-20		0.01791	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
928	chr21	45077397	45077398	rs7279968	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.3	NR	rs7279968-G	0.554562	5E-11		0.013129	[0.0092-0.017] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
928	chr21	45078555	45078556	rs17004598	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	21q22.3	HSF2BP	rs17004598-C	0.01	1E-7		2.57	[NR]	Illumina [1468075]	N
928	chr21	45079244	45079245	rs2051407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.3	HSF2BP	rs2051407-C	0.596625	1E-10		0.0146704195	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
928	chr21	45079244	45079245	rs2051407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs2051407-C	0.637749	3E-22				Affymetrix, Illumina [24246363] (imputed)	N
928	chr21	45079244	45079245	rs2051407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	21q22.3	NR	rs2051407-C	0.600527	4E-25		0.019314	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
928	chr21	45080551	45080552	rs2282526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	21q22.3	RRP1B	rs2282526-T	0.5799	2E-10		0.02275459	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
928	chr21	45082364	45082365	rs7282122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.3		rs7282122-?	NR	5E-18				NR [~ 8900000] (imputed)	N
929	chr21	45089876	45089877	rs2838344	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	21q22.3	RRP1B	rs2838344-A	0.6005	2E-7		0.0299	[0.019-0.041] unit increase	NR [8041861] (imputed)	N
929	chr21	45107561	45107562	rs9306160	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	21q22.3	RRP1B	rs9306160-T	0.3787	1E-7		0.252	mmHg decrease	Illumina [242296]	N
929	chr21	45107561	45107562	rs9306160	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	21q22.3	RRP1B	rs9306160-T	0.3818	9E-10		0.1779	[0.12-0.23] mmHg decrease	Illumina [242296]	N
929	chr21	45118700	45118701	rs11700909	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q22.3	HSF2BP, RRP1B, PDXK	rs11700909-?		3E-10				Affymetrix, Illumina [NR] (imputed)	N
929	chr21	45153705	45153706	rs142471995	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q22.3	NR	rs142471995-T	0.0096	2E-6	(EA)	0.2003	[0.12-0.28] unit decrease	Illumina [~ 11800000] (imputed)	N
929	chr21	45181445	45181446	rs762407	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	21q22.3	PDXK	rs762407-A		7E-7	(Ordinal)	0.319	[0.19-0.44] unit increase	Illumina [at least 472049] (imputed)	N
929	chr21	45181445	45181446	rs762407	27980656	Justice AE	2016-10-18	BMC Proc	Genome-wide association of trajectories of systolic blood pressure change.	Systolic blood pressure change trajectory	up to 683 Mexican American individuals from 20 families	NA	21q22.3	PDXK	rs762407-A		1E-6	(Trajectory class 4)	0.25	[0.15-0.35] unit increase	Illumina [at least 472049] (imputed)	N
929	chr21	45192106	45192107	rs147242481	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Homocysteine levels	5,727 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	21q22.3		rs147242481-A	0.013999999999999999	2E-11		0.52	[0.36-0.68] unit increase	Illumina [7880617]	N
929	chr21	45201831	45201832	rs35285321	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Cystatin B plasma levels	400 French ancestry individuals	NA	21q22.3		rs35285321-G	NR	4E-22		0.353	[0.3-0.41] ng/mL decrease	Illumina [5201092] (imputed)	N
929	chr21	45201831	45201832	rs35285321	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cystatin-B levels	21,758 European ancestry individuals	9,173 individuals	21q22.3		rs35285321-A	0.33	2E-755		0.5302	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
929	chr21	45201831	45201832	rs35285321	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	21q22.3	NR	rs35285321-?	NR	7E-15	(Cystatin B)	0.398688	[0.3-0.5] unit decrease	Illumina [11901634] (imputed)	N
929	chr21	45201831	45201832	rs35285321	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	21q22.3	CSTB	rs35285321-A	0.38	8E-57		0.43	unit decrease	Illumina [5270624] (imputed)	N
929	chr21	45206354	45206355	rs1041456	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	21q22.3	NR	rs1041456-?		2E-41	(CSTB)	0.4323	[NR] unit decrease	Illumina [NR]	N
929	chr21	45214634	45214635	rs74925444	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDXK	5,355 Icelandic ancestry individuals	NA	21q22.3		rs74925444-A	0.016	1E-14		0.568924	[0.42-0.71] unit decrease	Illumina [7506463] (imputed)	N
930	chr21	45267133	45267134	rs762416	33762635	Martinez-Magana JJ	2021-03-24	Sci Rep	Genome-wide association study of psychiatric and substance use comorbidity in Mexican individuals.	Psychiatric symptomatology	658 Mexican ancestry cases, 1,487 Mexican ancestry controls	NA	21q22.3		rs762416-T	0.4075	6E-6		0.71	[0.62-0.83]	Illumina [248101]	N
930	chr21	45282968	45282969	rs148593140	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	PDXK	rs148593140-G	0.9825	5E-9	(PDXK, 11098_1_3)	0.5468696	[0.36-0.73] unit increase	Illumina [> 1000000] (imputed)	N
930	chr21	45317558	45317559	rs189861387	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Cystatin-B levels	21,758 European ancestry individuals	9,173 individuals	21q22.3		rs189861387-T	0.059	5E-11		0.1152	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
931	chr21	45361043	45361044	rs4819351	32804141	Wang RZ	2020-08-10	J Alzheimers Dis	Genome-Wide Association Study of Brain Alzheimer's Disease-Related Metabolic Decline as Measured by [18F] FDG-PET Imaging.	Cerebral glucose metabolic decline (right temporal gyrus)	67 European ancestry Alzheimer's disease cases, 323 European ancestry mild cognitive impairment cases, 196 European ancestry individuals with normal cognition	NA	21q22.3		rs4819351-A	0.227	4E-8		0.016	unit decrease	Illumina [278989]	N
931	chr21	45381323	45381324	rs190148180	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	21q22.3	NR	rs190148180-?	NR	7E-6		0.663	[0.39-0.94] unit increase	Illumina [at least 560000] (imputed)	N
931	chr21	45390736	45390737	rs78512431	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	21q22.3	AGPAT3	rs78512431-C	0.073	2E-7	(Imidazole derivatives [J01XD])	2.93		Illumina [16500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	9E-6	(TAG 52:3)	0.20654087	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	6E-6	(TAG 52:5)	0.20822696	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	3E-8	(TAG 54:5)	0.2524801	[0.16-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	2E-7	(TAG 52:4)	0.23798852	[0.15-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	2E-6	(TAG 54:4)	0.21723726	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45391751	45391752	rs9976628	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	TMEM1	rs9976628-?	NR	1E-6	(TAG 54:6)	0.21966918	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
931	chr21	45404337	45404338	rs7435	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	21q22.3	AGPAT3	rs7435-A	NR	2E-7		0.02	[NR] % decrease	Affymetrix, Illumina [NR]	N
931	chr21	45412871	45412872	rs10084572	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in diabetes	70,762 European ancestry individuals, 20,967 African American individuals	NA	21q22.3	AGPAT3	rs10084572-T	0.014	1E-12		28.026	[20.31-35.74] unit decrease	Affymetrix [NR] (imputed)	N
933	chr21	45614859	45614860	rs8127691	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.3	NR	rs8127691-?	NR	9E-30	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
933	chr21	45615022	45615023	rs2838519	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	21q22.3	ICOSLG	rs2838519-G	0.39	6E-11		1.14	[1.05-1.22]	Affymetrix, Illumina [~ 1100000] (imputed)	N
933	chr21	45615022	45615023	rs2838519	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	21q22.3	ICOSLG	rs2838519-G	0.391	2E-14		1.18	[1.13-1.23]	Affymetrix, Illumina [953241] (imputed)	N
933	chr21	45615560	45615561	rs762421	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	21q22.3	ICOSLG	rs762421-G	0.39	1E-9		1.13	[NR]	Affymetrix, Illumina [635547] (imputed)	N
933	chr21	45615740	45615741	rs7282490	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	21q22.3	Intergenic	rs7282490-?		5E-13				Illumina [9578670] (imputed)	N
933	chr21	45615740	45615741	rs7282490	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	21q22.3	Intergenic	rs7282490-?		2E-23				Illumina [9725440] (imputed)	N
933	chr21	45615740	45615741	rs7282490	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	21q22.3	Intergenic	rs7282490-?		2E-18				Illumina [9560910] (imputed)	N
933	chr21	45615740	45615741	rs7282490	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.3	NR	rs7282490-G	0.3934	2E-15	(EA)	1.1100584	[1.09-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
933	chr21	45615740	45615741	rs7282490	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	21q22.3	NR	rs7282490-G	0.3934	6E-23	(EA)	1.1274672	[1.1-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
933	chr21	45615740	45615741	rs7282490	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	21q22.3	ICOSLG	rs7282490-G	0.39	6E-9		1.11		Illumina [128935]	N
933	chr21	45615740	45615741	rs7282490	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	21q22.3	ICOSLG	rs7282490-G	0.39	1E-6	(EA)	1.1		Illumina [128935]	N
933	chr21	45615740	45615741	rs7282490	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	21q22.3	ICOSLG	rs7282490-G	0.391	2E-26		1.105	[1.072-1.138]	Affymetrix, Illumina [1230000] (imputed)	N
933	chr21	45616323	45616324	rs4456788	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	21q22.3	AP001057.1	rs4456788-?	NR	6E-25	(subset analysis)			Illumina [130052]	N
933	chr21	45617327	45617328	rs2032327	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	21q22.3		rs2032327-?	NR	3E-6		0.231	[0.13-0.33] unit increase	Illumina [5082878] (imputed)	N
933	chr21	45618113	45618114	rs59998884	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Inflammatory bowel disease	7,045 European ancestry cases, 449,282 European ancestry controls	NA	21q22.3	NR	rs59998884-T	0.4	1E-9		1.11	[NR]	NR [8546065] (imputed)	N
933	chr21	45621816	45621817	rs6518350	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	21q22.3	ICOSLG	rs6518350-A	0.82	1E-7		1.1363636		Illumina [135870]	N
933	chr21	45624550	45624551	rs56178904	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	21q22.3	ICOSLG	rs56178904-T	0.187	7E-11		0.898		Illumina [715631] (imputed)	N
933	chr21	45624550	45624551	rs56178904	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	21q22.3	ICOSLG	rs56178904-T	0.187	7E-11		0.898		Illumina [715631] (imputed)	N
933	chr21	45627580	45627581	rs55708341	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	21q22.3	C21orf33, ICOSLG	rs55708341-T	0.18	3E-6		0.07	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
933	chr21	45629120	45629121	rs58911644	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	21q22.3	ICOSLG	rs58911644-A	0.807	6E-7		1.1235955		Illumina [139553]	N
933	chr21	45644683	45644684	rs8131653	27195777	Sano M	2016-05-19	PLoS One	Genome-Wide Association Study of Absolute QRS Voltage Identifies Common Variants of TBX3 as Genetic Determinants of Left Ventricular Mass in a Healthy Japanese Population.	Left ventricular QRS voltage	2,994 Japanese ancestry individuals	2,941 Japanese ancestry individuals	21q22.3	ICOSLG, LOC100129890	rs8131653-?	NR	6E-6	(RV5)	0.116	[0.065-0.167] unit decrease	Illumina [~ 2500000]	N
933	chr21	45647420	45647421	rs4819388	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	21q22.3	ICOSLG	rs4819388-?	0.72	2E-9		1.14	[1.09-1.19]	Illumina [292387]	N
933	chr21	45650008	45650009	rs2236668	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	21q22.3	ICOSLG, AIRE	rs2236668-T	NR	8E-8		0.0798051	[0.051-0.109] unit decrease	Illumina [8380626] (imputed)	N
933	chr21	45652483	45652484	rs59307670	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	ICOSLG	rs59307670-C	0.78734375	2E-6	(ICOSLG, 5061_27_3)	0.14437689	[0.085-0.203] unit increase	Illumina [> 1000000] (imputed)	N
933	chr21	45653763	45653764	rs7278257	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	21q22.3		rs7278257-C	NR	4E-10		0.91	[0.89-0.94]	NR [13810676] (imputed)	N
933	chr21	45656773	45656774	rs11558819	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	ICOSLG	rs11558819-C	0.74375	6E-194	(ICOSLG, 9303_9_3)	0.79002315	[0.74-0.84] unit increase	Illumina [> 1000000] (imputed)	N
933	chr21	45656773	45656774	rs11558819	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	ICOSLG	rs11558819-T	0.269	4E-108	(ICOS ligand, ICOSLG.9303.9.3)	0.58	[0.52-0.64] unit decrease	Affymetrix [10572788] (imputed)	N
933	chr21	45660834	45660835	rs2847224	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICOSLG	5,359 Icelandic ancestry individuals	NA	21q22.3		rs2847224-A	0.415	2E-14		0.144229	[0.11-0.18] unit decrease	Illumina [7506463] (imputed)	N
933	chr21	45660834	45660835	rs2847224	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	21q22.3		rs2847224-A	NR	9E-25		0.0178	[0.014-0.021] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
933	chr21	45660834	45660835	rs2847224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	21q22.3	ICOSLG	rs2847224-A	0.430565	9E-28		0.02467736	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
933	chr21	45660834	45660835	rs2847224	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	21q22.3	ICOSLG	rs2847224-A	0.430558	1E-28		0.025041174	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
933	chr21	45660834	45660835	rs2847224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs2847224-A	0.383661	2E-36				Affymetrix, Illumina [19872809] (imputed)	N
933	chr21	45660834	45660835	rs2847224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	21q22.3	NR	rs2847224-A	0.430555	1E-34		0.024926	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
933	chr21	45660834	45660835	rs2847224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	21q22.3		rs2847224-?	NR	9E-33				NR [~ 8900000] (imputed)	N
933	chr21	45662978	45662979	rs9974367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	21q22.3	ICOSLG	rs9974367-G	0.3844	2E-9		0.02217342	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr21	45662978	45662979	rs9974367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	21q22.3	ICOSLG	rs9974367-G	0.3844	7E-9		0.02151657	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr21	45662978	45662979	rs9974367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	21q22.3	ICOSLG	rs9974367-G	0.3843	5E-10		0.02297068	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
933	chr21	45687270	45687271	rs2838538	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	21q22.3	CTSB, AIRE, TRPM2, TSPEAR	rs2838538-?		4E-6		4.606	[2.81-6.4] unit increase	Illumina [~ 4900000] (imputed)	N
933	chr21	45703243	45703244	rs111469885	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	21q22.3		rs111469885-A	NR	3E-8		0.1235	[0.08-0.167] unit decrease	Affymetrix, Illumina [25835038] (imputed)	N
933	chr21	45709152	45709153	rs2075876	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	21q22.3	AIREe	rs2075876-G	0.9	8E-14		2.17	[1.77-2.66]	Illumina [7068382] (imputed)	N
933	chr21	45709152	45709153	rs2075876	21505073	Terao C	2011-04-19	Hum Mol Genet	The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population.	Rheumatoid arthritis	1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls	4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls	21q22.3	AIRE, PFKL	rs2075876-A	0.34	4E-9		1.18	[1.11-1.24]	Illumina [241523]	N
933	chr21	45714293	45714294	rs74203920	34012112	Chiou J	2021-05-19	Nature	Interpreting type 1 diabetes risk with genetics and single-cell epigenomics.	Type 1 diabetes	18,942 European ancestry cases, 501,638 European ancestry controls	NA	21q22.3	AIRE	rs74203920-T	0.019793	2E-8		0.3138792	[0.2-0.42] unit increase	Affymetrix, Illumina [62116689] (imputed)	N
933	chr21	45714293	45714294	rs74203920	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	21q22.3	AIRE	rs74203920-T	0.02	9E-25		3.42	[2.71-4.32]	Illumina [7068382] (imputed)	N
933	chr21	45722810	45722811	rs62220377	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	21q22.3		rs62220377-A	0.948135	1E-31		0.110966	[0.092-0.13] unit decrease	NR [11722792] (imputed)	N
933	chr21	45733866	45733867	rs1057037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	21q22.3	NR	rs1057037-T	NR	3E-10		0.0281	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
933	chr21	45742888	45742889	rs148438309	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	21q22.3		rs148438309-?	NR	4E-15		0.409578	[0.3-0.52] unit decrease	NR [9800000] (imputed)	N
934	chr21	45745064	45745065	rs141250471	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	21q22.3		rs141250471-?	NR	2E-15		0.187408	[0.14-0.23] unit increase	NR [9800000] (imputed)	N
934	chr21	45745939	45745940	rs147169525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	21q22.3		rs147169525-G	NR	9E-9		0.1387	[0.091-0.186] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
934	chr21	45745939	45745940	rs147169525	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	21q22.3		rs147169525-G	NR	8E-9		0.1429	[0.094-0.192] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
934	chr21	45746101	45746102	rs17850433	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	21q22.3		rs17850433-C	NR	6E-19		0.0938	[0.073-0.115] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
934	chr21	45746101	45746102	rs17850433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	21q22.3	PFKL	rs17850433-C	0.012008	8E-11		0.06579155	[0.046-0.086] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr21	45746101	45746102	rs17850433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	21q22.3	PFKL	rs17850433-C	0.012008	1E-12		0.07167969	[0.052-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
934	chr21	45746101	45746102	rs17850433	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	21q22.3	PFKL	rs17850433-C		1E-8		0.058	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
934	chr21	45746610	45746611	rs118106526	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	21q22.3		rs118106526-?	NR	1E-19		0.162149	[0.12-0.2] unit increase	NR [9800000] (imputed)	N
934	chr21	45750855	45750856	rs117840172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	21q22.3	NR	rs117840172-A	NR	1E-11		0.0457	[0.032-0.059] unit increase	Affymetrix [9000000] (imputed)	N
934	chr21	45753116	45753117	rs75087725	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	21q22.3		rs75087725-A	0.012	3E-11		0.418	[0.29-0.54] unit increase	Illumina [10461755] (imputed)	N
934	chr21	45753116	45753117	rs75087725	29566793	Nicolas A	2018-03-21	Neuron	Genome-wide Analyses Identify KIF5A as a Novel ALS Gene.	Amyotrophic lateral sclerosis	20,806 European ancestry cases, 59,804 European ancestry controls	4,159 cases, 18,650 controls	21q22.3	C21orf2	rs75087725-?	0.0078	2E-14	(EA)	1.67	[1.46-1.91]	Illumina [10031630] (imputed)	N
934	chr21	45753116	45753117	rs75087725	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	21q22.3	C21orf2	rs75087725-?	0.01	3E-10		1.47	[1.31-1.66]	Illumina [8697640] (imputed)	N
934	chr21	45755359	45755360	rs2236441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	21q22.3	NR	rs2236441-T	NR	9E-12		0.0208	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
934	chr21	45821581	45821582	rs9974927	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	21q22.3	TRPM2	rs9974927-G	0.054	6E-17				Illumina [239042]	N
934	chr21	45826485	45826486	rs56379273	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	21q22.3	TRPM2	rs56379273-A		9E-8		0.3655	[0.23-0.5] unit increase	Illumina [NR]	N
934	chr21	45854739	45854740	rs45593631	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	21q22.3	NR	rs45593631-T	0.25	2E-6				Illumina [4877242] (imputed)	N
935	chr21	45876715	45876716	rs116969723	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	21q22.3	LRRC3	rs116969723-G	0.65	4E-15		4.166667	[2.94-6.25]	Affymetrix [508192]	N
935	chr21	45877286	45877287	rs200510006	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	21q22.3		rs200510006-A	0.0062	3E-8		2.5901468	[1.64-3.54] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
935	chr21	45896739	45896740	rs2838568	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation negative individuals	Up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	21q22.3	LRRC3, C21orf29	rs2838568-?	NR	2E-7		1.3157895	[1.19-1.45]	Illumina [254145]	N
935	chr21	45935195	45935196	rs79628306	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	21q22.3		rs79628306-?	NR	3E-11				NR [~ 8900000] (imputed)	N
935	chr21	45935195	45935196	rs79628306	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	21q22.3	NR	rs79628306-T	0.0142845	9E-15		0.101448	[0.076-0.127] unit decrease	NR [19129689] (imputed)	N
935	chr21	45936194	45936195	rs141433484	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.3	TSPEAR	rs141433484-A	NR	5E-8		0.157068	NR unit decrease	NR [NR] (imputed)	N
935	chr21	45994607	45994608	rs201441480	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	21q22.3		rs201441480-A	0.011	7E-6		3.86	[1.87-7.99]	NR [127834]	N
935	chr21	45994840	45994841	rs7276273	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	21q22.3	KRTAP10-4	rs7276273-C	0.007434	7E-6		0.150231	[0.085-0.216] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
935	chr21	45998932	45998933	rs420894	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q22.3	NR	rs420894-A	NR	2E-6	(male)	0.3834	[0.23-0.54] unit increase	Illumina [11133794] (imputed)	N
936	chr21	46073372	46073373	rs12483360	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	21q22.3	TSPEAR	rs12483360-G	0.54	2E-6		1.25	[1.16-1.34]	Affymetrix, Illumina [~ 8500000] (imputed)	N
936	chr21	46129685	46129686	rs875125	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 1,986 controls	NA	21q22.3	TSPEAR	rs875125-?	NR	4E-6		2.06	[1.51 - 2.83]	Illumina [533898] (imputed)	N
936	chr21	46130547	46130548	rs73234886	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of digits	2,563 European ancestry individuals	NA	21q22.3	KRTAP10-13P	rs73234886-G	0.904111	9E-6		0.337102	[0.19-0.49] unit increase	Illumina [6952813] (imputed)	N
936	chr21	46137103	46137104	rs235286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	21q22.3		rs235286-?	NR	4E-8				NR [~ 8900000] (imputed)	N
937	chr21	46171581	46171582	rs690640	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	21q22.3	TSPEAR, LL21NC02-1C16.2	rs690640-?	NR	1E-5		4.425	[NR] z score increase	Illumina [6737359] (imputed)	N
937	chr21	46171581	46171582	rs690640	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicidality in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	21q22.3	TSPEAR, LL21NC02-1C16.2	rs690640-?	NR	1E-5		4.425	z score increase	Illumina [6737359] (imputed)	N
937	chr21	46172674	46172675	rs690333	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	21q22.3	NR	rs690333-C	0.37693	5E-18		0.0276993	[0.021-0.034] unit increase	NR [19129689] (imputed)	N
937	chr21	46172674	46172675	rs690333	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		21q22.3	NR	rs690333-C	NR	1E-9		0.0384246	NR unit increase	NR [NR] (imputed)	N
937	chr21	46173027	46173028	rs664353	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	21q22.3		rs664353-?	NR	2E-11				NR [~ 8900000] (imputed)	N
937	chr21	46209425	46209426	rs11088963	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	21q22.3		rs11088963-G	NR	5E-14		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
937	chr21	46209425	46209426	rs11088963	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	21q22.3	UBE2G2	rs11088963-C	0.51	3E-11		6.67	z-score increase	Affymetrix [4312306] (imputed)	N
937	chr21	46265499	46265500	rs56399780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	21q22.3		rs56399780-C	NR	8E-31		0.0373	[0.031-0.044] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
937	chr21	46265499	46265500	rs56399780	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	21q22.3		rs56399780-C	NR	6E-30		0.0367	[0.03-0.043] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
937	chr21	46265499	46265500	rs56399780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs56399780-T	0.851591	1E-38				Affymetrix, Illumina [22063850] (imputed)	N
937	chr21	46265499	46265500	rs56399780	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	21q22.3	NR	rs56399780-T	0.852055	6E-42		0.036586	[0.031-0.042] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
938	chr21	46268782	46268783	rs9980195	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	21q22.3	PTTG1IP	rs9980195-T	0.474453	7E-17		0.00320145	[0.0024-0.004] unit increase	Affymetrix [13995440] (imputed)	N
938	chr21	46268782	46268783	rs9980195	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	21q22.3	PTTG1IP	rs9980195-?		3E-13		0.0313	[0.023-0.04] unit decrease	Illumina [31500000] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.149535	5E-37		0.039636835	[0.034-0.046] unit increase	Affymetrix [93095623] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.149472	3E-22		0.030513976	[0.024-0.037] unit increase	Affymetrix [93095623] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.149608	4E-37		0.040241152	[0.034-0.046] unit increase	Affymetrix [93095623] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.149626	1E-43		0.0427285	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.149615	5E-43		0.04265524	[0.037-0.049] unit increase	Affymetrix [93095623] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs741951-A	0.118641	5E-11				Affymetrix, Illumina [24332387] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	21q22.3	NR	rs741951-A	0.146155	6E-11		0.017431	[0.012-0.023] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs741951-A	0.122924	6E-68				Affymetrix, Illumina [24246363] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	21q22.3	NR	rs741951-A	0.146121	8E-68		0.045518	[0.04-0.051] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs741951-A	0.123151	5E-60				Affymetrix, Illumina [20825802] (imputed)	N
938	chr21	46269525	46269526	rs741951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	21q22.3	NR	rs741951-A	0.149026	7E-60		0.044299	[0.039-0.05] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
938	chr21	46269525	46269526	rs741951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	21q22.3		rs741951-?	NR	1E-41				NR [~ 8900000] (imputed)	N
938	chr21	46269525	46269526	rs741951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	21q22.3		rs741951-?	NR	5E-44				NR [~ 8900000] (imputed)	N
938	chr21	46269525	46269526	rs741951	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	21q22.3	PTTG1IP	rs741951-A	NR	1E-10		0.0336708	[0.023-0.045] unit increase	Affymetrix [16832071] (imputed)	N
938	chr21	46269525	46269526	rs741951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.15	2E-22		0.04827801	[0.039-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr21	46269525	46269526	rs741951	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	21q22.3	PTTG1IP	rs741951-A	0.15	3E-21		0.04708211	[0.037-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr21	46271451	46271452	rs235314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	21q22.3		rs235314-C	0.467298	4E-8		0.0210517	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
938	chr21	46271451	46271452	rs235314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	21q22.3		rs235314-C	0.467298	4E-8		0.0211376	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
938	chr21	46271451	46271452	rs235314	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	21q22.3		rs235314-C	0.467298	4E-8		0.0209024	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
938	chr21	46271451	46271452	rs235314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	21q22.3		rs235314-T	0.406047	1E-10		0.0309761	[0.022-0.04] unit decrease	Illumina [13465896] (imputed)	N
938	chr21	46271451	46271452	rs235314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	21q22.3		rs235314-T	NR	1E-24		0.0211	[0.017-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
938	chr21	46271451	46271452	rs235314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	21q22.3		rs235314-T	NR	5E-34		0.0229	[0.019-0.027] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
938	chr21	46271451	46271452	rs235314	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	21q22.3		rs235314-T	0.406392	1E-9		0.0215401	[0.015-0.028] unit decrease	Illumina [13476165] (imputed)	N
938	chr21	46271451	46271452	rs235314	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	21q22.3	PTTG1IP	rs235314-C	0.468215	7E-38		0.00649317	[0.0055-0.0075] unit increase	Affymetrix [13995440] (imputed)	N
938	chr21	46271451	46271452	rs235314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	21q22.3	PTTG1IP	rs235314-C	0.467788	2E-20		0.0177558	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	21q22.3	PTTG1IP	rs235314-C	0.467716	2E-27		0.0214868	[0.018-0.025] unit increase	Affymetrix [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	21q22.3	PTTG1IP	rs235314-T	NR	8E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	21q22.3	PTTG1IP	rs235314-T	NR	3E-16				Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	21q22.3	PTTG1IP	rs235314-T	NR	2E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	21q22.3	PTTG1IP	rs235314-T	NR	2E-8	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	21q22.3	PTTG1IP	rs235314-T	NR	2E-18				Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	21q22.3	PTTG1IP	rs235314-T	NR	1E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	21q22.3	PTTG1IP	rs235314-T	NR	3E-6	(EA)	0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	21q22.3	PTTG1IP	rs235314-T	NR	3E-6	(Asian)	0.006	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	21q22.3	PTTG1IP	rs235314-T	NR	1E-11		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	21q22.3	PTTG1IP	rs235314-T	NR	4E-6	(Asian)	0.006067	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	21q22.3	PTTG1IP	rs235314-T	NR	4E-10		0.005774	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
938	chr21	46271451	46271452	rs235314	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	21q22.3	NR	rs235314-T	0.496	2E-9				Affymetrix, Illumina [at least 2500000] (imputed)	N
938	chr21	46271451	46271452	rs235314	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.3	PTTG1IP	rs235314-T	0.4952	4E-10		0.0174	[0.012-0.023] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
938	chr21	46271451	46271452	rs235314	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	21q22.3	PTTG1IP	rs235314-?	NR	3E-10		0.03324	[0.023-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr21	46271451	46271452	rs235314	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	21q22.3	PTTG1IP	rs235314-?	NR	3E-9		0.02449	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr21	46272104	46272105	rs235316	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	21q22.3	PTTG1IP	rs235316-T	NR	8E-6		1.44	[1.23-1.69]	Illumina [up to 294091]	N
938	chr21	46278922	46278923	rs183516	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q22.3	NR	rs183516-T	NR	8E-10		0.0148	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
938	chr21	46285049	46285050	rs139711584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	21q22.3		rs139711584-T	NR	4E-9		0.0823	[0.055-0.11] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
938	chr21	46285049	46285050	rs139711584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs139711584-T	0.00709687	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
938	chr21	46285049	46285050	rs139711584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	21q22.3	NR	rs139711584-T	0.007276	3E-12		0.081817	[0.059-0.105] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
938	chr21	46294985	46294986	rs235374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	21q22.3		rs235374-G	NR	2E-7		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
938	chr21	46294985	46294986	rs235374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	21q22.3		rs235374-G	0.578	3E-6	(EA)	0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
938	chr21	46294985	46294986	rs235374	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	21q22.3	NR	rs235374-G	NR	7E-9		0.017	unit increase	Affymetrix [at least 7091467] (imputed)	N
938	chr21	46300133	46300134	rs60220267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	21q22.3	NR	rs60220267-A	NR	1E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr21	46302951	46302952	rs189511080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q22.3	ITGB2	rs189511080-A	0.00414199999999998	6E-10		0.11317032	[0.077-0.149] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr21	46308799	46308800	rs2230531	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	21q22.3		rs2230531-?	NR	9E-12		0.0758299	[0.053-0.099] unit decrease	NR [9800000] (imputed)	N
938	chr21	46309311	46309312	rs5030672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q22.3	ITGB2	rs5030672-A	0.00882899999999998	7E-10		0.07302789	[0.05-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr21	46322852	46322853	rs2026882	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	21q22.3	NR	rs2026882-T	NR	4E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
938	chr21	46323272	46323273	rs17004715	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	21q22.3	ITGB2	rs17004715-G	NR	3E-6		2.69	[NR] unit increase	Affymetrix [NR] (imputed)	N
938	chr21	46328098	46328099	rs760462	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on basophil	1,556 Sardinian (founder/genetic isolate) ancestry individuals	NA	21q22.3		rs760462-C	0.8258099999999999	2E-21		0.4516	[0.36-0.54] unit increase	Illumina [16937871] (imputed)	N
938	chr21	46328098	46328099	rs760462	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on CD33dim HLA DR-	1,559 Sardinian (founder/genetic isolate) ancestry individuals	NA	21q22.3		rs760462-C	0.82614	5E-20		0.4384	[0.35-0.53] unit increase	Illumina [16943254] (imputed)	N
938	chr21	46336302	46336303	rs113721258	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.3	NR	rs113721258-G	0.01045	1E-8	(ACOT13)	0.2003	NR unit increase	Illumina [1671387] (imputed)	N
938	chr21	46340511	46340512	rs760453	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11b on basophil	1,556 Sardinian (founder/genetic isolate) ancestry individuals	NA	21q22.3		rs760453-A	0.51268	3E-9		0.2215	[0.15-0.29] unit decrease	Illumina [16937871] (imputed)	N
938	chr21	46348763	46348764	rs4818988	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.3		rs4818988-?	NR	1E-15		0.0177586	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
938	chr21	46348763	46348764	rs4818988	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.3	ITGB2	rs4818988-A	0.491927	6E-9		0.0206188	[0.014-0.028] unit increase	NR [17166351] (imputed)	N
938	chr21	46348763	46348764	rs4818988	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	21q22.3	ITGB2	rs4818988-A	0.490974	3E-7	(women)	0.0242657	[0.015-0.034] unit increase	NR [17166351] (imputed)	N
938	chr21	46354054	46354055	rs9974172	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.3	LINC01547	rs9974172-A	0.145194	1E-10		0.0170883	[0.012-0.022] unit decrease	NR [13737936] (imputed)	N
938	chr21	46354054	46354055	rs9974172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.3		rs9974172-?	NR	1E-10				NR [~ 8900000] (imputed)	N
939	chr21	46407437	46407438	rs11088975	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Coronary artery calcification in type 2 diabetes (excluding prevalent cardiovascular disease)	1,248 African American individuals	NA	21q22.3		rs11088975-G	0.45	4E-7		0.5	[0.3-0.7] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
939	chr21	46466926	46466927	rs4819021	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	21q22.3	NR	rs4819021-?	NR	1E-7		0.11763	[0.074-0.161] unit decrease	Affymetrix [7794483] (imputed)	N
939	chr21	46477129	46477130	rs4818756	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	PRED57	rs4818756-?	NR	9E-6	(LPE 22:6)	0.16420741	[0.092-0.237] unit increase	Affymetrix [at least 2500000] (imputed)	N
939	chr21	46477129	46477130	rs4818756	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	21q22.3	PRED57	rs4818756-?	NR	6E-6	(LPC 18:0)	0.1679921	[0.095-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
939	chr21	46487729	46487730	rs79585412	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs79585412-T	0.9428	6E-9		0.0178	[0.012-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
939	chr21	46488031	46488032	rs62216572	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	21q22.3		rs62216572-C	0.327	2E-10		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
939	chr21	46488054	46488055	rs187282135	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs187282135-T	0.9933	4E-8		0.310427	[0.2-0.42] increase	Affymetrix [11014269] (imputed)	N
939	chr21	46488958	46488959	rs76040172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	21q22.3		rs76040172-A	NR	2E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
939	chr21	46488958	46488959	rs76040172	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs76040172-?	NR	9E-16				Affymetrix [~ 8270000] (imputed)	N
939	chr21	46488958	46488959	rs76040172	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	21q22.3	NR	rs76040172-A	0.05368	3E-16		0.0450907	[0.034-0.056] unit decrease	Affymetrix [10549349] (imputed)	N
939	chr21	46491154	46491155	rs7282639	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs7282639-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
939	chr21	46491154	46491155	rs7282639	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	21q22.3	NR	rs7282639-?	NR	5E-8		0.12305	[0.079-0.167] unit decrease	Affymetrix [7794483] (imputed)	N
939	chr21	46493002	46493003	rs915814	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs915814-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
939	chr21	46494994	46494995	rs9977825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	21q22.3	Intergenic	rs9977825-T	0.357	2E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
939	chr21	46494994	46494995	rs9977825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs9977825-T	0.3655	3E-10		0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
939	chr21	46494994	46494995	rs9977825	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.3	Intergenic	rs9977825-T	0.3655	7E-11	(MTAG)	0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
939	chr21	46498683	46498684	rs8130074	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs8130074-C	0.3504	5E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
939	chr21	46501575	46501576	rs2838771	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	21q22.3	ADARB1	rs2838771-G	0.35	3E-8		0.028	unit increase	NR [2324712] (imputed)	N
939	chr21	46501575	46501576	rs2838771	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	21q22.3	NR	rs2838771-C	0.648	5E-11		0.00745667	[0.0052-0.0097] unit decrease	NR [9732723] (imputed)	N
939	chr21	46510315	46510316	rs2838774	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs2838774-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
940	chr21	46539724	46539725	rs2838787	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	21q22.3	NR	rs2838787-G	0.6076	8E-9		1.0362694	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
940	chr21	46563819	46563820	rs13047590	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	21q22.3	NR	rs13047590-T	0.1363	1E-6		0.1998	[0.12-0.28] unit increase	Illumina [7305641] (imputed)	N
940	chr21	46567624	46567625	rs403694	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		21q22.3	ADARB1	rs403694-C	0.462687	1E-18		0.0121794	[0.0095-0.0149] unit decrease	Affymetrix [12370749]	N
940	chr21	46567624	46567625	rs403694	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	21q22.3	NR	rs403694-T	0.537	3E-8		0.0121441	[0.0078-0.0164] unit increase	NR [9732723] (imputed)	N
940	chr21	46570895	46570896	rs427943	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.3	NA	rs427943-A	0.4288	4E-25		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
940	chr21	46570895	46570896	rs427943	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	21q22.3	NA	rs427943-A	0.4288	4E-25		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
940	chr21	46570895	46570896	rs427943	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	21q22.3	NA	rs427943-A	0.4288	4E-25		0.0177	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
940	chr21	46570895	46570896	rs427943	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	21q22.3	NR	rs427943-A	NR	7E-7		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
940	chr21	46570895	46570896	rs427943	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	21q22.3	ADARB1	rs427943-A	0.59	9E-10	(Male)	0.021	[0.015-0.027] unit increase	Illumina [6108953] (imputed)	N
940	chr21	46570895	46570896	rs427943	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.3	ADARB1	rs427943-C	0.58	4E-7	(EA)	0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
940	chr21	46570895	46570896	rs427943	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.3	ADARB1	rs427943-C	0.58	2E-7	(EA, men)	0.025	[0.016-0.035] kg/m2 increase	Affymetrix, Illumina [2550021]	N
940	chr21	46570895	46570896	rs427943	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	21q22.3	ADARB1	rs427943-C	0.578	2E-7		0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
940	chr21	46571888	46571889	rs407133	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	21q22.3	ADARB1	rs407133-G	0.441207	5E-8		0.0105516	[0.0068-0.0143] unit increase	Affymetrix [NR] (imputed)	N
940	chr21	46574553	46574554	rs372519	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	21q22.3		rs372519-?	NR	2E-9		0.0162	unit increase	NR [NR]	N
940	chr21	46581797	46581798	rs394608	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	21q22.3		rs394608-C	NR	5E-14		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
940	chr21	46581797	46581798	rs394608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	21q22.3		rs394608-C	0.54	1E-7		0.011	mmol/L increase	NR [NR] (imputed)	N
940	chr21	46581797	46581798	rs394608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	21q22.3		rs394608-C	0.54	4E-11		0.012	nmol/L decrease	NR [NR] (imputed)	N
940	chr21	46581797	46581798	rs394608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	21q22.3		rs394608-C	0.54	1E-13				NR [NR] (imputed)	N
940	chr21	46581797	46581798	rs394608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	21q22.3		rs394608-C	0.54	1E-6		0.008	mmol/L decrease	NR [NR] (imputed)	N
940	chr21	46581797	46581798	rs394608	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	21q22.3		rs394608-C	0.54	7E-17		0.012	% increase	NR [NR] (imputed)	N
940	chr21	46581797	46581798	rs394608	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs394608-?	NR	4E-21				Affymetrix [~ 8270000] (imputed)	N
940	chr21	46581797	46581798	rs394608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.3		rs394608-?	NR	1E-20				NR [~ 8900000] (imputed)	N
940	chr21	46582099	46582100	rs394872	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	21q22.3	ADARB1	rs394872-C	0.463762	2E-8		0.0112774	[0.0073-0.0152] unit decrease	Affymetrix [NR] (imputed)	N
940	chr21	46629589	46629590	rs2838815	17903307	Wilk JB	2007-09-19	BMC Med Genet	Framingham Heart Study genome-wide association: results for pulmonary function measures.	Pulmonary function	Up to 1,222 individuals	NA	21q22.3	ADARB1	rs2838815-?	NR	3E-6	(meanratio)			Affymetrix [70897]	N
940	chr21	46642763	46642764	rs2253763	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	21q22.3	ADARB1	rs2253763-T	0.4001	5E-8		0.0534	[0.034-0.073] unit increase	NR [9744772] (imputed)	N
940	chr21	46646004	46646005	rs2838820	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	21q22.3	ADARB1	rs2838820-T	0.4628	6E-7		4.723		Affymetrix [757439]	N
941	chr21	46665207	46665208	rs2838834	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	21q22.3		rs2838834-C	0.699	6E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
941	chr21	46699776	46699777	rs4819052	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	21q22.3	POFUT2	rs4819052-?	NR	8E-6		0.132	[0.059-0.205] unit increase	Illumina [at least 13000000] (imputed)	N
941	chr21	46702821	46702822	rs74961332	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	21q22.3	POFUT2	rs74961332-?	NR	2E-6		4.779	[NR] z score increase	Illumina [6737359] (imputed)	N
941	chr21	46753703	46753704	rs1109754	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	21q22.3	ADARB1	rs1109754-G	0.266653	2E-6		0.732	[0.643 - 0.833]	Illumina [5400100] (imputed)	N
941	chr21	46753703	46753704	rs1109754	32771030	Tangtanatakul P	2020-08-08	Arthritis Res Ther	Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population.	Systemic lupus erythematosus	487 Thai cases, 1,606 Thai controls	405 Thai cases, 1,590 Thai controls	21q22.3	LINC00315, BX322557.13	rs1109754-A	0.13	2E-6		1.5106	[NR]	Illumina [421909] (imputed)	N
941	chr21	46779090	46779091	rs28378811	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	21q22.3	NR	rs28378811-T	0.4707	9E-9		0.0114	[0.0075-0.0153] unit increase	NR [~ 27400000] (imputed)	N
941	chr21	46780105	46780105	rs759304654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs759304654-GCAGCCCCCACCAAAATCTTCCC	NR	3E-14		0.0216388	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
941	chr21	46780105	46780105	rs759304654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs759304654-GCAGCCCCCACCAAAATCTTCCC	NR	4E-14		0.0215533	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
941	chr21	46780105	46780105	rs759304654	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs759304654-GCAGCCCCCACCAAAATCTTCCC	NR	3E-11		0.0191961	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
941	chr21	46780698	46780699	rs35565513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs35565513-T	NR	9E-11		0.0193775	[0.014-0.025] unit increase	Affymetrix [319769] (imputed)	N
941	chr21	46780698	46780699	rs35565513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs35565513-T	NR	1E-10		0.0192676	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
941	chr21	46780698	46780699	rs35565513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs35565513-T	NR	1E-8		0.0172323	[0.011-0.023] unit increase	Affymetrix [321169] (imputed)	N
941	chr21	46780704	46780705	rs34051881	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	MTCO1P3	rs34051881-A	NR	4E-9		0.0184223	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
941	chr21	46783284	46783285	rs11088991	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.3	NR	rs11088991-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
941	chr21	46789983	46789984	rs4819075	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	21q22.3		rs4819075-A	0.47	4E-18		8.68	z score increase	Affymetrix [9061022] (imputed)	N
942	chr21	46795787	46795788	rs2838900	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	21q22.3	NR	rs2838900-A	0.4494	1E-17				NR [9056863] (imputed)	N
942	chr21	46806255	46806256	rs4819084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.3	BX322559.3	rs4819084-A	NR	1E-11		0.0197335	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
942	chr21	46806255	46806256	rs4819084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q22.3		rs4819084-?	NR	1E-10				NR [~ 8900000] (imputed)	N
942	chr21	46807498	46807499	rs4818775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.3	BX322559.3	rs4818775-G	NR	5E-8		0.0160711	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
942	chr21	46807498	46807499	rs4818775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.3	BX322559.3	rs4818775-G	NR	3E-8		0.0162247	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
942	chr21	46825722	46825723	rs34975687	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	21q22.3		rs34975687-C	0.28	4E-27		10.79	z score increase	Affymetrix [9061022] (imputed)	N
942	chr21	46825722	46825723	rs34975687	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	21q22.3		rs34975687-?	NR	1E-9				NR [9705931] (imputed)	N
942	chr21	46826676	46826677	rs56206235	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	21q22.3	COL18A1	rs56206235-?		5E-8				NR [7428630] (imputed)	N
942	chr21	46846943	46846944	rs2838923	22745009	Melville SA	2012-05-15	Ann Neurol	Multiple loci influencing hippocampal degeneration identified by genome scan.	Hippocampal atrophy	1149 European ancestry Alzheimer disease cases, 336 European ancestry individuals with mild cognitive impairment, 188 European ancestry controls	419 African American Alzheimer disease cases	21q22.3	COL18A1	rs2838923-A	0.73	8E-7	(Hippocampal volume)			Illumina [2131250] (imputed)	N
942	chr21	46849500	46849501	rs117828698	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	21q22.3	COL18A1	rs117828698-A		1E-8		20.6	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
942	chr21	46853258	46853259	rs7283026	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	21q22.3	COL18A1	rs7283026-C	0.27	8E-10				NR [9312144] (imputed)	N
942	chr21	46875774	46875775	rs114139997	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.3	COL18A1	rs114139997-A	0.0193	1E-28		0.2399	[0.2-0.28] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
942	chr21	46875774	46875775	rs114139997	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	21q22.3	COL18A1	rs114139997-?	0.0193	2E-11	(AA)	0.16	unit decrease	Illumina [247644]	N
942	chr21	46875774	46875775	rs114139997	24507774	Peloso GM	2014-02-01	Am J Hum Genet	Association of low-frequency and rare coding-sequence variants with blood lipids and coronary heart disease in 56,000 whites and blacks.	Triglycerides	up to 42,208 European ancestry individuals, up to 14,330 African ancestry individuals	NA	21q22.3	COL18A1	rs114139997-?	0.019	2E-16	(AA)	0.16	unit decrease	Illumina [247644]	N
942	chr21	46876305	46876306	rs11702494	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	21q22.3	NR	rs11702494-A	NR	2E-9		0.0173	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
942	chr21	46876305	46876306	rs11702494	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	COL18A1	rs11702494-G	0.7640625	6E-10	(COL18A1, 2201_17_6)	0.17567024	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
942	chr21	46881700	46881701	rs111761582	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	21q22.3	NR	rs111761582-C	0.0243	3E-6		47.138	[46.48-47.79]	Illumina [10000612] (imputed)	N
942	chr21	46882224	46882225	rs80290585	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.3	NR	rs80290585-C	0.0122	2E-8	(FDXR)	0.02879	NR unit increase	Illumina [1671387] (imputed)	N
942	chr21	46899278	46899279	rs9980311	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	21q22.3	COL18A1	rs9980311-A	0.744246	1E-11		0.0151544	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
942	chr21	46899278	46899279	rs9980311	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	21q22.3	COL18A1	rs9980311-A	0.744187	8E-14		0.0171706	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
942	chr21	46900545	46900546	rs28608951	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	21q22.3	COL18A1	rs28608951-T	0.29	8E-6		0.216	[0.12-0.31] unit increase	Illumina [6379332] (imputed)	N
942	chr21	46901972	46901973	rs12482088	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	NR	rs12482088-C	0.255	1E-19	(Endostatin, COL18A1.2201.17.6)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
942	chr21	46902179	46902180	rs12482563	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Endostatin plasma levels	400 French ancestry individuals	NA	21q22.3		rs12482563-T	NR	7E-8		0.079	[0.048-0.11] ng/mL decrease	Illumina [5201092] (imputed)	N
942	chr21	46906709	46906710	rs79985863	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	21q22.3	Intergenic	rs79985863-T	NR	8E-7	(between families)	4.925	unit increase	Affymetrix [up to 15107142] (imputed)	N
942	chr21	46908997	46908998	rs9980525	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL18A1	5,356 Icelandic ancestry individuals	NA	21q22.3		rs9980525-A	0.2107	1E-12		0.154041	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
942	chr21	46910351	46910352	rs116274237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	21q22.3	COL18A1	rs116274237-G	0.256776	1E-11		0.018081028	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
942	chr21	46916203	46916204	rs77974343	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	21q22.3	COL18A1	rs77974343-T	0.0197	4E-9		0.1304	[0.087-0.174] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
942	chr21	46917034	46917035	rs73370840	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	21q22.3	NR	rs73370840-?	NR	9E-7		1.1648589	[1.10-1.24]	Affymetrix, Illumina [~ 10400000] (imputed)	N
942	chr21	46922101	46922102	rs11702255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	21q22.3		rs11702255-A	NR	1E-8		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
942	chr21	46922101	46922102	rs11702255	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	21q22.3	NR	rs11702255-A	NR	7E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
943	chr21	46924321	46924322	rs116618591	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	21q22.3		rs116618591-?	NR	3E-9		1.9578	[1.31-2.61] unit increase	Affymetrix [NR] (imputed)	N
943	chr21	46924930	46924931	rs9980752	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 105)	19,670 European ancestry individuals	NA	21q22.3		rs9980752-?	NR	1E-8				NR [9705931] (imputed)	N
943	chr21	46929093	46929094	rs9977704	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	21q22.3		rs9977704-G	0.42	1E-9		6.09	z score increase	Affymetrix [9061022] (imputed)	N
943	chr21	46929093	46929094	rs9977704	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	21q22.3	NR	rs9977704-G	0.3921	1E-8				NR [9056863] (imputed)	N
943	chr21	46930091	46930092	rs144147445	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	COL18A1	rs144147445-A	0.017	6E-44	(Endostatin, COL18A1.2201.17.6)	1.32	[1.14-1.5] unit decrease	Affymetrix [10572788] (imputed)	N
943	chr21	46931108	46931109	rs12483377	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	21q22.3	NR	rs12483377-A	NR	3E-9		0.0251	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
943	chr21	46931108	46931109	rs12483377	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	21q22.3		rs12483377-A	0.0874	2E-10		0.24695519	[0.17-0.33] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
943	chr21	46931108	46931109	rs12483377	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	21q22.3		rs12483377-A	0.0846	3E-8		0.13396513	[0.086-0.181] mmHg decrease	Affymetrix, Illumina [247314] (imputed)	N
943	chr21	46931108	46931109	rs12483377	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	COL18A1	rs12483377-A	0.09	2E-364	(Epididymal secretory protein E1, NPC2.6259.60.3)	1.42	[1.36-1.48] unit increase	Affymetrix [10572788] (imputed)	N
943	chr21	46932613	46932614	rs17255281	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	21q22.3	COL18A1	rs17255281-A	0.003049	2E-6	(African)			Illumina [4404269] (imputed)	N
943	chr21	46936979	46936980	rs3788191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	21q22.3		rs3788191-?	NR	1E-8				NR [~ 8900000] (imputed)	N
943	chr21	46995907	46995908	rs12329894	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	21q22.3	NR	rs12329894-G	0.0122	4E-10	(FERMT2)	0.09612	NR unit increase	Illumina [1671387] (imputed)	N
943	chr21	47028092	47028093	rs117715457	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	21q22.3		rs117715457-?	NR	9E-6		0.8502913	[0.48-1.22] unit decrease	Illumina [9842460] (imputed)	N
943	chr21	47030605	47030606	rs8134686	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	21q22.3	NR	rs8134686-?	NR	9E-6		0.180521	[0.1-0.26] unit decrease	NR [13958389] (imputed)	N
943	chr21	47051786	47051787	rs744507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs744507-C	0.6279	5E-10	(conditional-joint)	0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
944	chr21	47124177	47124178	rs4819143	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	21q22.3	PCBP3	rs4819143-C	0.06	1E-6	(Insulin)	17.0	[10.00 - 23.00] % decrease	Affymetrix [872243]	N
944	chr21	47125045	47125046	rs2297293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	21q22.3		rs2297293-C	0.3141	9E-11		0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
944	chr21	47125045	47125046	rs2297293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	21q22.3	Intergenic	rs2297293-C	0.3141	4E-11	(MTAG)	0.0094	[0.0067-0.0121] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
944	chr21	47145373	47145374	rs2838986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	21q22.3	Intergenic	rs2838986-A	0.1888	1E-9	(MTAG)	0.0129	[0.0088-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
944	chr21	47154347	47154348	rs116946461	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	21q22.3	PCBP3	rs116946461-A	0.02	2E-6	(EA)	0.32	0.18-0.45 unit decrease	Illumina [NR] (imputed)	N
944	chr21	47154347	47154348	rs116946461	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	21q22.3	PCBP3	rs116946461-C	0.98	5E-13		0.3595	[0.26-0.46] unit increase	Affymetrix [~ 11900000] (imputed)	N
944	chr21	47155542	47155543	rs73232740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.3	NR	rs73232740-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
944	chr21	47158920	47158921	rs143549714	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	PCBP3	rs143549714-A	NR	3E-8		0.0288166	[0.019-0.039] unit decrease	Affymetrix [321114] (imputed)	N
944	chr21	47165428	47165429	rs8127571	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	21q22.3	LOC100129027	rs8127571-A		2E-7	(AA)			Illumina [NR]	N
944	chr21	47181010	47181011	rs7280089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	21q22.3	PCBP3	rs7280089-A	NR	1E-8		0.0227634	[0.015-0.031] unit decrease	Affymetrix [321169] (imputed)	N
945	chr21	47210458	47210459	rs73232768	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	PCBP3	rs73232768-T	NR	4E-10		0.0255561	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
945	chr21	47211084	47211085	rs8133932	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	21q22.3	NR	rs8133932-C	NR	3E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
945	chr21	47211341	47211342	rs76875849	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	21q22.3	PCBP3	rs76875849-A	NR	9E-6		0.65223444	[0.36-0.94] unit decrease	Illumina [> 6200000] (imputed)	N
946	chr21	47326746	47326747	rs8132840	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	21q22.3	NR	rs8132840-A	0.5722	4E-12		0.0502	[0.036-0.064] unit decrease	Illumina [~ 10600000] (imputed)	N
946	chr21	47327541	47327542	rs7277632	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	21q22.3	NR	rs7277632-G	0.72	1E-10		0.34	[0.24-0.44] unit increase	Affymetrix [9231066] (imputed)	N
946	chr21	47327541	47327542	rs7277632	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	21q22.3	NR	rs7277632-G	0.72	1E-10		0.34	[0.24-0.44] unit increase	Affymetrix [9231066] (imputed)	N
946	chr21	47328989	47328990	rs9976042	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	21q22.3	PCBP3	rs9976042-?	NR	9E-9		0.448	[0.29-0.61] unit decrease	Affymetrix [11100000] (imputed)	N
946	chr21	47338290	47338291	rs1736426	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	21q22.3	NR	rs1736426-G		2E-11		0.08	[0.06-0.1] unit increase	NR [NR]	N
946	chr21	47356358	47356359	rs76583883	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	21q22.3	NR	rs76583883-G	NR	5E-6		0.2317	[0.13-0.33] SD units increase	NR [10700000] (imputed)	N
946	chr21	47366801	47366802	rs434206	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	21q22.3	COL6A1	rs434206-T	0.594	5E-17	(Collagen alpha-1(VI) chain, COL6A1.11150.3.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
946	chr21	47371936	47371937	rs118113146	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMP7	5,359 Icelandic ancestry individuals	NA	21q22.3		rs118113146-C	0.01123	6E-12		0.110787	[0.079-0.142] unit increase	Illumina [7506463] (imputed)	N
946	chr21	47371946	47371947	rs73157695	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	21q22.3	PCBP3, COL6A1, COL6A2, FTCD	rs73157695-?		2E-36				Affymetrix, Illumina [NR] (imputed)	N
946	chr21	47371946	47371947	rs73157695	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	21q22.3	PCBP3, COL6A1	rs73157695-?	NR	5E-13		1.059322	[1.04-1.08]	Illumina [13762925] (imputed)	N
946	chr21	47373758	47373759	rs2839073	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (lumbar spine) in inflammatory bowel disease	254 Japanese ancestry cases	NA	21q22.3	COL6A1	rs2839073-C	NR	8E-7		0.53	[NR] unit decrease	Affymetrix [4384682] (imputed)	N
946	chr21	47376466	47376467	rs4599218	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	21q22.3	NR	rs4599218-?	NR	5E-11		0.136228	[0.096-0.177] unit decrease	NR [13958389] (imputed)	N
946	chr21	47377295	47377296	rs2150458	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL6A1	5,361 Icelandic ancestry individuals	NA	21q22.3		rs2150458-A	0.4149	5E-61		0.310474	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
946	chr21	47377295	47377296	rs2150458	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	21q22.3	PCBP3, COL6A1	rs2150458-?	NR	3E-6		0.0781151	[0.045-0.111] unit decrease	NR [13958389] (imputed)	N
946	chr21	47377295	47377296	rs2150458	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	COL6A1	rs2150458-A	0.414375	4E-33	(COL6A1, 11150_3_3)	0.30030954	[0.25-0.35] unit increase	Illumina [> 1000000] (imputed)	N
946	chr21	47377295	47377296	rs2150458	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	21q22.3	PCBP3, COL6A1	rs2150458-A	0.4546	1E-14		7.735	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
946	chr21	47396593	47396594	rs2005950	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	21q22.3	COL6A1	rs2005950-A	0.1437	3E-10		0.1763	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
946	chr21	47397585	47397586	rs1883048	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	21q22.3	COL6A1, PCBP3	rs1883048-C		4E-11		0.0057	[0.0039-0.0075] unit increase	Affymetrix [13304133] (imputed)	N
946	chr21	47397585	47397586	rs1883048	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		PCBP3/LOC101928796/COL6A1	rs1883048-A	0.5	3E-6		0.09	[0.051-0.129] unit decrease	Illumina [3700000] (imputed)	N
946	chr21	47404421	47404422	rs148766287	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	21q22.3	COL6A1	rs148766287-?	NR	2E-10		0.37	unit decrease	Illumina [NR]	N
946	chr21	47404421	47404422	rs148766287	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	21q22.3	COL6A1	rs148766287-?	NR	1E-7		0.31	unit decrease	Illumina [NR]	N
946	chr21	47404421	47404422	rs148766287	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	21q22.3	COL6A1	rs148766287-C	0.9853	3E-19		0.5394	[0.42-0.66] unit increase	Affymetrix [~ 11900000] (imputed)	N
946	chr21	47413084	47413085	rs2742071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	COL6A1	rs2742071-T	NR	4E-9		0.0239389	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
946	chr21	47413792	47413793	rs142493024	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	21q22.3	COL6A1, PCBP3	rs142493024-A	NR	9E-12		0.76	[0.54-0.98] unit increase	Affymetrix [7701190] (imputed)	N
946	chr21	47413792	47413793	rs142493024	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	21q22.3	COL6A1	rs142493024-G	0.986	1E-101		0.66	[0.6-0.72] unit increase	Affymetrix [12000000] (imputed)	N
946	chr21	47413792	47413793	rs142493024	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal hysteresis	106,041 European ancestry individuals	9,029 European ancestry individuals	21q22.3	COL6A1	rs142493024-G	0.986	8E-98		0.595	[0.54-0.65] unit increase	Affymetrix [12000000] (imputed)	N
946	chr21	47419519	47419520	rs75434097	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	21q22.3	COL6A1	rs75434097-A	0.144581073632714	5E-11		0.0050236	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
946	chr21	47420666	47420667	rs182804464	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COL6A1	5,361 Icelandic ancestry individuals	NA	21q22.3		rs182804464-G	0.03448	9E-6		0.228349	[0.13-0.33] unit decrease	Illumina [7506463] (imputed)	N
946	chr21	47420666	47420667	rs182804464	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	21q22.3		rs182804464-C	0.985451	2E-64		0.632593	[0.56-0.71] increase	Affymetrix [11014269] (imputed)	N
946	chr21	47420666	47420667	rs182804464	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	21q22.3	COL6A1	rs182804464-G	0.016	1E-11		0.73	[0.52-0.94] mm Hg decrease	Affymetrix [NR] (imputed)	N
946	chr21	47422411	47422412	rs35796750	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	21q22.3	COL6A1	rs35796750-C	0.45009999999999994	2E-9		0.1246	[0.084-0.165] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
946	chr21	47423481	47423482	rs150432347	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	21q22.3	COL6A1	rs150432347-?	0.0006	1E-7		22.14	[13.95-30.33] unit increase	Illumina [105487]	N
946	chr21	47423508	47423509	rs13051496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	21q22.3		rs13051496-T	NR	1E-19		0.0161	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
946	chr21	47423508	47423509	rs13051496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	COL6A1	rs13051496-T	NR	8E-9		0.0196389	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
946	chr21	47423508	47423509	rs13051496	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	21q22.3	COL6A1	rs13051496-T	NR	1E-8		0.0211684	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
946	chr21	47423508	47423509	rs13051496	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	21q22.3		rs13051496-T	0.2203	3E-12		0.14020637	[0.099-0.182] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
946	chr21	47423508	47423509	rs13051496	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.3	NR	rs13051496-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
946	chr21	47423508	47423509	rs13051496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.3		rs13051496-?	NR	4E-23				NR [~ 8900000] (imputed)	N
946	chr21	47427164	47427165	rs13050142	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	21q22.3		rs13050142-T	NR	4E-11		0.0183	[0.013-0.023] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
946	chr21	47427164	47427165	rs13050142	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	21q22.3		rs13050142-T	0.31	2E-40		0.013	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
946	chr21	47427164	47427165	rs13050142	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	21q22.3		rs13050142-T	0.29	2E-8		0.016	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
946	chr21	47427355	47427356	rs57357892	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs57357892-T	0.748918	1E-8		0.0547863	[0.034-0.076] decrease	Affymetrix [11014269] (imputed)	N
946	chr21	47436326	47436327	rs9977276	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	21q22.3	COL6A1	rs9977276-T	0.2229	4E-8	(EA)	0.0218	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr21	47436326	47436327	rs9977276	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	21q22.3	COL6A1	rs9977276-T	0.2229	1E-7	(EA,women)	0.0275	[0.017-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
946	chr21	47438138	47438139	rs11702647	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11702647-C	0.761229	1E-8		0.0609593	[0.04-0.082] increase	Affymetrix [11014269] (imputed)	N
946	chr21	47442333	47442334	rs2839082	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	21q22.3	COL6A1, COL6A2	rs2839082-?	NR	8E-9		0.07	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
946	chr21	47445790	47445791	rs4293630	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	21q22.3	intergenic	rs4293630-G	0.07	3E-6		1.96	[1.14-2.78] unit decrease	Illumina [6380737] (imputed)	N
946	chr21	47445790	47445791	rs4293630	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol dependence factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	21q22.3	intergenic	rs4293630-A	0.14	7E-6		0.108	[NR] unit increase	Illumina [~ 300000]	N
947	chr21	47457371	47457372	rs68050354	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs68050354-C	0.838724	1E-18		0.100938	[0.077-0.125] increase	Affymetrix [11014269] (imputed)	N
947	chr21	47470695	47470696	rs9982334	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.3	NR	rs9982334-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
947	chr21	47475824	47475825	rs71324488	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs71324488-C	0.942448	2E-8		0.105158	[0.065-0.145] increase	Affymetrix [11014269] (imputed)	N
947	chr21	47488331	47488332	rs16978810	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	21q22.3	NR	rs16978810-?		3E-7	(females)			Illumina [1211988] (imputed)	N
947	chr21	47519534	47519535	rs8133436	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	21q22.3	COL6A2	rs8133436-?	NA	2E-8		2.85	[1.85-3.85] unit increase	Affymetrix [5541230] (imputed)	N
947	chr21	47519534	47519535	rs8133436	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	21q22.3	COL6A2	rs8133436-T	0.18	2E-9		3.61	[2.43-4.79] unit increase	Affymetrix, Illumina [NR] (imputed)	N
947	chr21	47535535	47535536	rs8133910	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	21q22.3	COL6A2	rs8133910-T	0.256	3E-22		0.0212	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
947	chr21	47537881	47537882	rs7279347	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	21q22.3	NR	rs7279347-A	0.5064	2E-11		0.0121	[0.0086-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
947	chr21	47538070	47538071	rs12483267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	21q22.3	COL6A2	rs12483267-G	NR	4E-9		0.0193872	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
947	chr21	47538070	47538071	rs12483267	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	21q22.3	COL6A2	rs12483267-G	NR	2E-9		0.0198594	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
947	chr21	47542219	47542220	rs2070578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	21q22.3		rs2070578-?	NR	1E-10				NR [~ 8900000] (imputed)	N
947	chr21	47543810	47543814	rs368443991	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	COL6A2	rs368443991-T	NR	2E-8		0.0162235	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
947	chr21	47545767	47545768	rs1042917	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs1042917-G	0.502282	5E-23		0.0872061	[0.069-0.105] increase	Affymetrix [11014269] (imputed)	N
947	chr21	47547473	47547474	rs112153300	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	21q22.3		rs112153300-?	NR	2E-33				NR [~ 8900000] (imputed)	N
947	chr21	47549362	47549363	rs184395229	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	21q22.3	COL6A2	rs184395229-?	NR	2E-9		0.08695567	[0.059-0.115] unit decrease	Illumina [27896057] (imputed)	N
947	chr21	47549409	47549410	rs76978157	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTCD	5,368 Icelandic ancestry individuals	NA	21q22.3		rs76978157-T	0.03236	3E-14		0.406025	[0.3-0.51] unit increase	Illumina [7506463] (imputed)	N
947	chr21	47550376	47550377	rs66514606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	21q22.3	COL6A2	rs66514606-T	NR	1E-8		0.0179665	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
947	chr21	47557879	47557880	rs725976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.3	NR	rs725976-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
947	chr21	47558551	47558552	rs61735841	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	21q22.3	FTCD	rs61735841-A	0.08413999999999999	1E-9		0.02573	[-1.93819-1.98965]	Illumina [281811]	N
947	chr21	47559746	47559747	rs4819204	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FTCD	5,368 Icelandic ancestry individuals	NA	21q22.3		rs4819204-A	0.0625	2E-11		0.267358	[0.19-0.35] unit increase	Illumina [7506463] (imputed)	N
947	chr21	47569140	47569141	rs9974320	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	21q22.3	NR	rs9974320-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
947	chr21	47569140	47569141	rs9974320	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	21q22.3	NR	rs9974320-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
947	chr21	47573549	47573550	rs2839127	31120506	Grassmann F	2019-05-23	JAMA Ophthalmol	Assessment of Novel Genome-Wide Significant Gene Loci and Lesion Growth in Geographic Atrophy Secondary to Age-Related Macular Degeneration.	Geographic atrophy lesion growth rate in age-related macular degeneration	935 European ancestry individuals	NA	21q22.3	NR	rs2839127-A	0.145	1E-8		0.059	[0.034-0.085] unit increase	Affymetrix [7596219] (imputed)	N
948	chr21	47631198	47631199	rs2001809	34025683	Kanoni S	2021-05-07	Front Immunol	Nutrigenetic Interactions Might Modulate the Antioxidant and Anti-Inflammatory Status in Mastiha-Supplemented Patients With NAFLD.	Glutathione peroxidase in non-alcoholic fatty liver disease x mastiha supplementation interaction	35 European or unknown ancestry mastiha exposed individuals, 52 European or unknown ancestry unexposed individuals	NA	21q22.3	LSS	rs2001809-T	0.72	9E-9		1.849	[1.22-2.48] unit decrease	Illumina [10307610] (imputed)	N
948	chr21	47674274	47674275	rs2250213	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	21q22.3		rs2250213-A	NR	6E-9		0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
948	chr21	47686212	47686213	rs149024257	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	21q22.3	FTCD	rs149024257-G	0.9384375	2E-8	(FTCD, 9213_24_3)	0.28711388	[0.19-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
948	chr21	47690067	47690068	rs2839186	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	21q22.3	MCM3APAS, MCM3AP	rs2839186-T	0.48	7E-12		1.18	[1.14-1.23]	Illumina [at least 371504] (imputed)	N
948	chr21	47690067	47690068	rs2839186	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	21q22.3	MCM3AP	rs2839186-T	0.443	3E-6		1.23	[NR]	Illumina [610240]	N
948	chr21	47690067	47690068	rs2839186	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	21q22.3	MCM3AP	rs2839186-T	0.46	1E-9		1.26	[1.15-1.38]	Illumina [307291]	N
948	chr21	47691215	47691216	rs9982623	30218097	Munz M	2018-09-14	Eur J Hum Genet	Meta-analysis of genome-wide association studies of aggressive and chronic periodontitis identifies two novel risk loci.	Periodontitis	4,102 European ancestry cases, 8,489 European ancestry controls	993 European ancestry cases, 1,419 European ancestry controls	21q22.3	MCM3AP	rs9982623-C	0.86	9E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [1722107] (imputed)	N
948	chr21	47694711	47694712	rs8131458	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	21q22.3	MCM3AP	rs8131458-A	0.395498	3E-12		0.015946185	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
949	chr21	47718795	47718796	rs112591243	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	21q22.3	NR	rs112591243-?	NR	3E-6	(Native Hawaiian)	0.6857	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
949	chr21	47767294	47767295	rs75756987	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	21q22.3	NR	rs75756987-G	0.8876	2E-9		0.0439	[0.03-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
949	chr21	47780160	47780161	rs11909986	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	21q22.3		rs11909986-A	NR	2E-9		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
949	chr21	47780222	47780223	rs9808759	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	21q22.3	NR	rs9808759-T	0.07	6E-9		1.07	[1.05-1.09]	Illumina [~ 10800000] (imputed)	N
949	chr21	47780222	47780223	rs9808759	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	21q22.3	NR	rs9808759-C	0.9253	4E-7	(EA)	0.0597	[0.037-0.083] unit decrease	Illumina [~ 11800000] (imputed)	N
949	chr21	47787510	47787511	rs1547380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	21q22.3		rs1547380-T	NR	8E-9		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
949	chr21	47823782	47823783	rs11701561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs11701561-T	0.493707	6E-11				Affymetrix, Illumina [23114412] (imputed)	N
950	chr21	47843003	47843004	rs9975345	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	21q22.3	PCNT	rs9975345-T	0.459526	4E-10		0.0116839	[0.008-0.0153] unit increase	NR [13737936] (imputed)	N
950	chr21	47843003	47843004	rs9975345	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	21q22.3		rs9975345-?	NR	9E-9				NR [~ 8900000] (imputed)	N
950	chr21	47850106	47850107	rs8131693	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	21q22.3	PCNT	rs8131693-A	0.052	1E-16		0.43	[0.33-0.54] unit decrease	Affymetrix [339439]	N
950	chr21	47853156	47853157	rs59500178	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	21q22.3		rs59500178-?	NR	8E-10		0.0125968	[0.0085-0.0167] unit increase	Affymetrix [20259828] (imputed)	N
950	chr21	47887094	47887095	rs62224256	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	S100 calcium-binding protein levels	8,318 European ancestry individuals	1,141 European ancestry individuals	21q22.3	PCNT	rs62224256-A	0.49	1E-300		0.61	[0.58-0.64] unit decrease	Illumina [~ 9000000] (imputed)	N
950	chr21	47904584	47904585	rs718496	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	21q22.3	DIP2A	rs718496-C	0.22943	3E-10		0.016887335	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
950	chr21	47910522	47910523	rs7279002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	21q22.3	DIP2A	rs7279002-G	0.229406	7E-13		0.01912902	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
950	chr21	47936648	47936649	rs11701802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	21q22.3	DIP2A	rs11701802-G	0.468797	5E-16		0.018004822	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr21	47936648	47936649	rs11701802	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	21q22.3	DIP2A	rs11701802-G	0.46884	1E-11		0.015078225	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr21	47941915	47941916	rs2096507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs2096507-A	0.465457	6E-18				Affymetrix, Illumina [24649327] (imputed)	N
950	chr21	47941915	47941916	rs2096507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	21q22.3	NR	rs2096507-A	0.469464	2E-20		0.017157	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
950	chr21	47941915	47941916	rs2096507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	21q22.3	NR	rs2096507-A	0.469194	6E-13		0.013913	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
950	chr21	47941915	47941916	rs2096507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	21q22.3		rs2096507-?	NR	2E-12				NR [~ 8900000] (imputed)	N
950	chr21	47956816	47956817	rs10714360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	21q22.3	DIP2A	rs10714360-C	0.331116	2E-9		0.0150564	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
950	chr21	47956816	47956817	rs10714360	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	21q22.3	DIP2A	rs10714360-C	0.331103	4E-16		0.019618617	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
950	chr21	47957766	47957767	rs721131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	21q22.3	NR	rs721131-C	0.31956	1E-20		0.018902	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
950	chr21	47960653	47960654	rs9637225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	21q22.3	NR	rs9637225-T	0.332232	2E-20				Affymetrix, Illumina [23472807] (imputed)	N
950	chr21	47961385	47961386	rs2070433	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	21q22.3	DIP2A	rs2070433-A	0.2245	9E-10		0.02647097	[0.018-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
950	chr21	47962810	47962811	rs11701512	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	21q22.3	DIP2A	rs11701512-A	0.1825	2E-11		0.151	[0.11-0.2] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
951	chr21	47995442	47995443	rs1981331	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	21q22.3	S100B	rs1981331-?		3E-8				Illumina [563980]	N
951	chr21	47998163	47998164	rs61657682	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	21q22.3	NR	rs61657682-?	NR	4E-6		0.10110045	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
951	chr21	48006052	48006053	rs186825689	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	21q22.3	Intergenic	rs186825689-A	0.96	8E-8	(AA)			Illumina [NR] (imputed)	N
951	chr21	48019867	48019868	rs881827	22286170	Cusanovich DA	2012-01-27	Hum Mol Genet	The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.	Lymphocyte counts	462 Hutterite individuals	NA	21q22.3	S100B	rs881827-?	NR	9E-6				Affymetrix [279749]	N
951	chr21	48023639	48023640	rs201555201	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	21q22.3	S100B	rs201555201-TAGATGTTAAAA		9E-6		1.061	[1.033-1.089]	Illumina [4498586] (imputed)	N
951	chr21	48042765	48042766	rs11910985	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	21q22.3	S100B	rs11910985-?		3E-8				Illumina [563980]	N
951	chr21	48048772	48048773	rs140733155	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	21q22.3	NR	rs140733155-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
951	chr21	48048772	48048773	rs140733155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	21q22.3		rs140733155-?	NR	6E-9				NR [~ 8900000] (imputed)	N
951	chr21	48048772	48048773	rs140733155	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	21q22.3	NA	rs140733155-A	0.9889	3E-9		0.0559	[0.037-0.074] unit decrease	NR [~ 27400000] (imputed)	N
951	chr21	48063150	48063151	rs8133217	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	21q22.3	NR	rs8133217-?	NR	9E-8				Affymetrix [NR]	N
951	chr21	48071529	48071530	rs2236617	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	21q22.3	PRMT2	rs2236617-G	0.65964020134879	6E-6		0.0025658	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
951	chr21	48094778	48094779	rs77371875	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	21q22.3	NR	rs77371875-A	NR	5E-6		0.3516	[0.2-0.5] unit decrease	Illumina [11133794] (imputed)	N
710	chr22	16504398	16504399	rs4911642	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	22q11.1	CCT8L2, psiTPTE22	rs4911642-C		5E-6				Illumina [944512] (imputed)	N
713	chr22	16880436	16880437	rs131569	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	22q11.1	NR	rs131569-A	0.2736	9E-6		1.2627857	[1.16-1.37]	Illumina [8567708] (imputed)	N
715	chr22	17057137	17057138	rs5746647	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	22q11.1	KB-67B5.12	rs5746647-?	NR	2E-6				Illumina [990115]	N
715	chr22	17068747	17068748	rs5993499	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	22q11.1	CCT8L2	rs5993499-T	0.068	4E-16		0.38	[0.29-0.47] unit decrease	Affymetrix [339439]	N
716	chr22	17274514	17274515	rs111837587	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	22q11.1	XKR3	rs111837587-A	0.010676000000000019	2E-7	(men)	0.111815	[0.069-0.154] unit increase	Affymetrix [641018] (imputed)	N
717	chr22	17304694	17304695	rs1032642268	32600054	Qian H	2020-06-29	Circ Genom Precis Med	Genome-Wide Association of Kidney Traits in Hispanics/Latinos Using Dense Imputed Whole-Genome Sequencing Data: The Hispanic Community Health Study/Study of Latinos.	Urinary albumin-to-creatinine ratio	11,688 Hispanic/Latino individuals	NA	22q11.1	XKR3	rs1032642268-A	0.002	7E-7		0.873	[0.53-1.22] unit increase	Illumina [32241096] (imputed)	N
717	chr22	17371547	17371548	rs140374692	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	22q11.1	NR	rs140374692-C	NR	6E-8		1.826	[1.47-2.27]	Illumina [13976150] (imputed)	N
717	chr22	17380086	17380086	rs57047299	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	22q11.1	NR	rs57047299-TGTTA	NR	5E-6		1.63	[1.32-2.01]	Illumina [13976150] (imputed)	N
718	chr22	17487475	17487476	rs138596453	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (childhood)	10,617 European ancestry cases, 16,537 European ancestry controls	NA	22q11.1	NR	rs138596453-?	0.98	6E-7		1.4925373	[1.27-1.75]	Illumina [~ 1072558] (imputed)	N
718	chr22	17488492	17488493	rs78813487	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	22q11.1		rs78813487-T	0.056	6E-7		1.29	[1.18-1.45]	Illumina [7199488] (imputed)	N
718	chr22	17534476	17534476	rs111486608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.1	CECR7	rs111486608-AGT	0.802069	3E-9		0.016614242	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
718	chr22	17561912	17561913	rs4819956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RA	5,365 Icelandic ancestry individuals	NA	22q11.1		rs4819956-C	0.2698	7E-35		0.260635	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
718	chr22	17563386	17563386	rs540638310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs540638310-T	0.385961	3E-13		0.016869202	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17577964	17577965	rs143008696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	22q11.1	IL17RA	rs143008696-T	0.0053	5E-12		0.1842882	[0.13-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17577964	17577965	rs143008696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	22q11.1	IL17RA	rs143008696-T	0.0053	4E-13		0.1950727	[0.14-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17579494	17579495	rs41409548	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q11.1		rs41409548-G	0.967	1E-25				Affymetrix [10369434] (imputed)	N
719	chr22	17579494	17579495	rs41409548	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	22q11.1		rs41409548-G	0.967	2E-18				Affymetrix [10369434] (imputed)	N
719	chr22	17580117	17580118	rs144322196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	22q11.1		rs144322196-G	0.023406	3E-10		0.106607	[0.074-0.14] unit decrease	Illumina [13471440] (imputed)	N
719	chr22	17580117	17580118	rs144322196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.1	IL17RA	rs144322196-G	0.034462	3E-24		0.07443639	[0.06-0.089] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17580117	17580118	rs144322196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.1	IL17RA	rs144322196-G	0.034458	4E-17		0.061562255	[0.047-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17580117	17580118	rs144322196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs144322196-G	0.034491	3E-33		0.08808558	[0.074-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17580117	17580118	rs144322196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs144322196-G	0.03448	1E-68		0.12868659	[0.11-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17580117	17580118	rs144322196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.1	IL17RA	rs144322196-G	0.034457	2E-13		0.05391861	[0.04-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17580117	17580118	rs144322196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q11.1	IL17RA	rs144322196-G	0.0363	8E-14		0.08564659	[0.063-0.108] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17580117	17580118	rs144322196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.1	IL17RA	rs144322196-G	0.0363	1E-24		0.1181144	[0.096-0.141] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17581837	17581838	rs2241044	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RA	5,365 Icelandic ancestry individuals	NA	22q11.1		rs2241044-C	0.4966	6E-110		0.402271	[0.37-0.44] unit decrease	Illumina [7506463] (imputed)	N
719	chr22	17585807	17585808	rs721930	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalicatena sp002161355 abundance in stool	5,959 Finnish ancestry individuals	NA	22q11.1		rs721930-C	0.184932	4E-8		0.0600753	[0.039-0.082] unit increase	Illumina [7980478] (imputed)	N
719	chr22	17586582	17586583	rs2241047	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.1	IL17RA	rs2241047-G	0.50859375	8E-347	(IL17RA, 2992_59_2)	0.86402535	[0.83-0.9] unit increase	Illumina [> 1000000] (imputed)	N
719	chr22	17586582	17586583	rs2241047	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q11.1	NR	rs2241047-?	NR	4E-96	(EA, Interleukin-17 receptor A)			Affymetrix [509946]	N
719	chr22	17586719	17586723	rs397780227	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA		IL17RA	rs397780227-A	0.496	6E-483	(Interleukin-17 receptor A, IL17RA.2992.59.2)	0.92	[0.88-0.96] unit increase	Affymetrix [10572788] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q11.1		rs140221307-C	NR	1E-24		0.1606	[0.13-0.19] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q11.1		rs140221307-C	NR	2E-328		0.59	[0.56-0.62] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q11.1		rs140221307-C	NR	1E-19		0.105	[0.082-0.128] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	22q11.1		rs140221307-?	NR	1E-30		0.151538	[0.12-0.18] unit decrease	NR [9800000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	22q11.1		rs140221307-?	NR	6E-13		0.0944587	[0.067-0.122] unit decrease	NR [9800000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	22q11.1		rs140221307-?	NR	3E-465		0.599145	[0.57-0.63] unit decrease	NR [9800000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	22q11.1		rs140221307-?	NR	1E-23		0.139288	[0.11-0.17] unit decrease	NR [9800000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00564299999999995	2E-29		0.16668862	[0.14-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00563100000000005	5E-11		0.0972594	[0.068-0.126] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.005633	1E-370		0.6119163	[0.58-0.64] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00562499999999999	1E-457		0.6809273	[0.65-0.71] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00563400000000003	2E-12		0.1045284	[0.076-0.134] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00562799999999997	7E-11		0.09662838	[0.068-0.126] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.1	IL17RA	rs140221307-C	0.00562600000000002	3E-25		0.15376274	[0.12-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.1	NR	rs140221307-T	0.994723	1E-36				Affymetrix, Illumina [24649327] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q11.1	NR	rs140221307-T	0.994665	3E-40		0.172154	[0.15-0.2] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.1	NR	rs140221307-T	0.994453	2E-22				Affymetrix, Illumina [19872809] (imputed)	N
719	chr22	17586756	17586757	rs140221307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q11.1	NR	rs140221307-T	0.994434	1E-25		0.140795	[0.11-0.17] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
719	chr22	17586756	17586757	rs140221307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q11.1	IL17RA	rs140221307-C	0.0055	6E-114		0.581211	[0.53-0.63] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.1	IL17RA	rs140221307-C	0.0055	4E-136		0.6380717	[0.59-0.69] unit decrease	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17586756	17586757	rs140221307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	22q11.1	IL17RA	rs140221307-C	0.0055	3E-78		0.4813244	[0.43-0.53] unit increase	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17587746	17587749	rs144369129	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs144369129-G	0.275078	8E-14		0.018826086	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17587746	17587749	rs144369129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.1	IL17RA	rs144369129-G	0.2772	7E-12		0.02766255	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
719	chr22	17587974	17587975	rs6518661	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.1	NR	rs6518661-A	0.356	5E-19	(Interleukin-17 receptor A, IL17RA.2992.59.2)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
719	chr22	17588657	17588658	rs149771513	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	22q11.1		rs149771513-?	NR	5E-43		0.440725	[0.38-0.5] unit increase	NR [9800000] (imputed)	N
719	chr22	17588657	17588658	rs149771513	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	22q11.1		rs149771513-?	NR	4E-28		0.354615	[0.29-0.42] unit increase	NR [9800000] (imputed)	N
719	chr22	17588657	17588658	rs149771513	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	22q11.1		rs149771513-?	NR	4E-185		0.903487	[0.84-0.97] unit increase	NR [9800000] (imputed)	N
719	chr22	17588657	17588658	rs149771513	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	22q11.1		rs149771513-?	NR	8E-16		0.272454	[0.21-0.34] unit increase	NR [9800000] (imputed)	N
719	chr22	17588657	17588658	rs149771513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.1	IL17RA	rs149771513-A	6.68000000000002E-4	5E-26		0.5485277	[0.45-0.65] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17588657	17588658	rs149771513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.1	IL17RA	rs149771513-A	6.68000000000002E-4	1E-15		0.41756812	[0.32-0.52] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17588657	17588658	rs149771513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.1	IL17RA	rs149771513-A	6.66000000000055E-4	2E-53		0.804227	[0.7-0.91] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17588657	17588658	rs149771513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs149771513-A	6.66000000000055E-4	9E-105		1.1341361	[1.03-1.24] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17588657	17588658	rs149771513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.1	IL17RA	rs149771513-A	6.69000000000031E-4	3E-12		0.3629914	[0.26-0.46] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17589151	17589152	rs41372049	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.1	NR	rs41372049-G	0.166	6E-178	(Interleukin-17 receptor A, IL17RA.2992.59.2)	0.88	[0.82-0.94] unit decrease	Affymetrix [10572788] (imputed)	N
719	chr22	17589566	17589567	rs879575	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs879575-T	0.240319	7E-25		0.026800131	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17590268	17590269	rs4819555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.1	IL17RA	rs4819555-T	0.240869	2E-12		0.018299628	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17590268	17590269	rs4819555	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.1	IL17RA	rs4819555-T	0.240887	3E-10		0.016414255	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
719	chr22	17590743	17590744	rs1468488	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q11.1		rs1468488-T	0.729	4E-17				Affymetrix [10369434] (imputed)	N
719	chr22	17592019	17592020	rs141573482	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.1	IL17RA	rs141573482-G	0.00405699999999998	2E-9		0.10940178	[0.073-0.145] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17593047	17593049	rs57380532	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.1	IL17RA	rs57380532-C	0.101965	4E-11		0.02422375	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr22	17595914	17595915	rs3827278	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	22q11.1	NR	rs3827278-?	NR	8E-45	(IL-17 sR)			Illumina [~ 4000000] (imputed)	N
719	chr22	17595914	17595915	rs3827278	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q11.1	IL17RA, CECR6	rs3827278-A	0.2316951	2E-93	(Interleukin-17 receptor A)	0.975	[0.89-1.06] unit increase	Affymetrix [509946]	N
719	chr22	17597461	17597462	rs971768	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	22q11.1	CECR6, IL17RA	rs971768-A	0.07	2E-6	(Right HG area)	13.91	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
719	chr22	17597560	17597561	rs9606618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.1	NR	rs9606618-A	0.00626145	1E-467				Affymetrix, Illumina [23467995] (imputed)	N
719	chr22	17597560	17597561	rs9606618	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q11.1	NR	rs9606618-A	0.006396	7E-472		0.570705	[0.55-0.59] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
719	chr22	17597560	17597561	rs9606618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.1		rs9606618-?	NR	9E-26				NR [~ 8900000] (imputed)	N
719	chr22	17597560	17597561	rs9606618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q11.1		rs9606618-?	NR	7E-21				NR [~ 8900000] (imputed)	N
719	chr22	17598511	17598512	rs45618234	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RA	5,365 Icelandic ancestry individuals	NA	22q11.1		rs45618234-A	0.08752	4E-132		0.786298	[0.72-0.85] unit decrease	Illumina [7506463] (imputed)	N
719	chr22	17601465	17601466	rs75243280	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	22q11.1	NR	rs75243280-?	NR	3E-11				Affymetrix, Illumina [6211246] (imputed)	N
719	chr22	17601465	17601466	rs75243280	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	22q11.1	NR	rs75243280-C	0.3314	7E-12		0.2323	[0.17-0.3] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
719	chr22	17603476	17603477	rs5748871	27043157	Keers R	2016-04-05	Psychother Psychosom	A Genome-Wide Test of the Differential Susceptibility Hypothesis Reveals a Genetic Predictor of Differential Response to Psychological Treatments for Child Anxiety Disorders.	Discordance in emotional problems in monozygotic twins	up to 1,026 child monozygotic twin pairs	NA	22q11.1	CECR6	rs5748871-?		2E-6		0.1915	[NR] unit decrease	Affymetrix [679050]	N
719	chr22	17617136	17617137	rs5747006	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.1	NR	rs5747006-A	0.179	8E-107	(Interleukin-17 receptor A, IL17RA.2992.59.2)	0.72	[0.66-0.78] unit increase	Affymetrix [10572788] (imputed)	N
719	chr22	17618163	17618164	rs5994176	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q11.1	AC006946.15, CECR5	rs5994176-G	0.3363545	2E-11	(EA, Interleukin-17 receptor A)	0.3051	[0.22-0.39] unit decrease	Affymetrix [509946]	N
719	chr22	17625914	17625915	rs35665085	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.1		rs35665085-?	NR	7E-13				NR [~ 8900000] (imputed)	N
719	chr22	17625914	17625915	rs35665085	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	22q11.1	NR	rs35665085-A	NR	3E-14		0.031460688	[0.023-0.04] unit increase	Illumina [242289]	N
719	chr22	17625914	17625915	rs35665085	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	22q11.1	NR	rs35665085-A	0.057	2E-7		0.034	unit increase	Illumina [242289]	N
719	chr22	17632193	17632194	rs34902370	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RA	5,365 Icelandic ancestry individuals	NA	22q11.1		rs34902370-T	0.2824	8E-41		0.274514	[0.23-0.31] unit decrease	Illumina [7506463] (imputed)	N
719	chr22	17649773	17649774	rs5748926	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	22q11.1	IL17RA	rs5748926-T	0.340426	4E-8		0.906606	[0.59-1.22] unit increase	NR [7263501] (imputed)	N
719	chr22	17669305	17669306	rs2231495	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PTHLH	5,359 Icelandic ancestry individuals	NA	22q11.1		rs2231495-C	0.3889	5E-27		0.194852	[0.16-0.23] unit increase	Illumina [7506463] (imputed)	N
719	chr22	17669305	17669306	rs2231495	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.1	NR	rs2231495-T	0.60921875	9E-370	(CECR1, 6077_63_3)	0.894083	[0.86-0.93] unit increase	Illumina [> 1000000] (imputed)	N
719	chr22	17669305	17669306	rs2231495	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.1	NR	rs2231495-T	0.60921875	2E-13	(PTHLH, 2962_50_2)	0.18235728	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
719	chr22	17669305	17669306	rs2231495	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.1	CECR1	rs2231495-C	0.333	1E-370	(Adenosine deaminase CECR1, CECR1.6077.63.3)	0.88	[0.84-0.92] unit decrease	Affymetrix [10572788] (imputed)	N
719	chr22	17675323	17675324	rs5748937	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q11.1		rs5748937-C	0.946	2E-12				Affymetrix [10369434] (imputed)	N
719	chr22	17675323	17675324	rs5748937	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	22q11.1		rs5748937-C	0.946	4E-12				Affymetrix [10369434] (imputed)	N
720	chr22	17718605	17718606	rs5747035	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	22q11.1	CECR1, CECR5	rs5747035-T	0.93	1E-6	(RAVLT-dr, EA)	0.6585	[0.39-0.92] unit increase	Affymetrix, Illumina [NR] (imputed)	N
720	chr22	17723173	17723174	rs2041144	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.1	NR	rs2041144-G	0.502	1E-19	(Adenosine deaminase CECR1, CECR1.6077.63.3)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
720	chr22	17745929	17745930	rs149023312	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CECR3	rs149023312-?	NR	7E-16		3.94821	[NR] unit decrease	Affymetrix [NR] (imputed)	N
720	chr22	17745929	17745930	rs149023312	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CECR3	rs149023312-?	NR	4E-9	(male)	4.25922	[NR] unit decrease	Affymetrix [NR] (imputed)	N
720	chr22	17793968	17793969	rs5749032	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	22q11.1	NR	rs5749032-G	NR	8E-9	(Recessive, Mixture cure model)	9.55	[4.44-20.55]	Illumina [810622]	N
721	chr22	17835277	17835278	rs531425523	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q11.1	RN7SL843P	rs531425523-C	5.65000000000038E-4	6E-11		0.3635783	[0.25-0.47] unit decrease	Affymetrix [93095623] (imputed)	N
721	chr22	17835277	17835278	rs531425523	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q11.1	RN7SL843P	rs531425523-C	6.0E-4	2E-9		0.4738522	[0.32-0.63] unit increase	Affymetrix [~ 2500000] (imputed)	N
721	chr22	17835277	17835278	rs531425523	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.1	RN7SL843P	rs531425523-C	6.0E-4	1E-14		0.6145417	[0.46-0.77] unit increase	Affymetrix [~ 2500000] (imputed)	N
721	chr22	17842730	17842731	rs737915	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	774 Chinese ancestry individuals	NA	22q11.1		rs737915-?	NR	9E-6		0.2	[0.11-0.29] unit increase	Affymetrix [NR] (imputed)	N
721	chr22	17906175	17906176	rs59667935	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs59667935-?	NR	2E-8				NR [~ 8900000] (imputed)	N
722	chr22	17990257	17990258	rs17809093	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	22q11.21	CECR2	rs17809093-G	0.04	1E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
723	chr22	18126019	18126020	rs5746451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.21	BCL2L13	rs5746451-C	0.504431	1E-20		0.020576004	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
723	chr22	18126019	18126020	rs5746451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.21	BCL2L13	rs5746451-C	0.504459	6E-24		0.02237105	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
723	chr22	18126019	18126020	rs5746451	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5746451-C	0.549433	5E-30				Affymetrix, Illumina [23114412] (imputed)	N
723	chr22	18133499	18133500	rs5747308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q11.21	BCL2L13	rs5747308-C	0.504673	3E-12		0.015431427	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
723	chr22	18133499	18133500	rs5747308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q11.21	BCL2L13	rs5747308-C	0.504651	1E-16		0.018375825	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
723	chr22	18133499	18133500	rs5747308	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.21	BCL2L13	rs5747308-C	0.504658	2E-12		0.01559019	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
723	chr22	18133499	18133500	rs5747308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q11.21	NR	rs5747308-C	0.504471	2E-30		0.022058	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
723	chr22	18133499	18133500	rs5747308	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q11.21	NR	rs5747308-C	0.504517	5E-15		0.015575	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
723	chr22	18133807	18133808	rs4819618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs4819618-?	NR	2E-17				NR [~ 8900000] (imputed)	N
723	chr22	18133807	18133808	rs4819618	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q11.21		rs4819618-?	NR	2E-16				NR [~ 8900000] (imputed)	N
723	chr22	18143834	18143835	rs8141347	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q11.21		rs8141347-T	NR	3E-9		0.013	[0.0087-0.0173] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
723	chr22	18143834	18143835	rs8141347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.21	BCL2L13	rs8141347-C	0.354662	3E-9		0.014342536	[0.0096-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
723	chr22	18144314	18144315	rs8137591	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q11.21	NR	rs8137591-C	NR	3E-9		0.0154	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
723	chr22	18146450	18146450	rs386394922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q11.21		rs386394922-CTT	NR	5E-16		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
723	chr22	18147422	18147423	rs5747315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5747315-A	0.556313	4E-14				Affymetrix, Illumina [19872809] (imputed)	N
723	chr22	18163157	18163158	rs34891900	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	22q11.21	BCL2L13	rs34891900-T	0.5025	3E-9		0.02130261	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
723	chr22	18165994	18165995	rs2587070	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q11.21	BCL2L13	rs2587070-G		1E-8		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
723	chr22	18165994	18165995	rs2587070	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q11.21	NR	rs2587070-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
723	chr22	18167858	18167859	rs13058451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q11.21		rs13058451-?	NR	1E-10				NR [~ 8900000] (imputed)	N
723	chr22	18168277	18168278	rs140179402	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Baseline cortisol levels in response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	22q11.21	BCL2L13	rs140179402-?	NR	2E-8				Illumina [430492]	N
723	chr22	18169211	18169212	rs5747327	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	22q11.21	BCL2L13	rs5747327-G	0.504	6E-10		0.02223546	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
723	chr22	18169211	18169212	rs5747327	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	22q11.21	BCL2L13	rs5747327-G	0.5041	3E-9		0.02124366	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
723	chr22	18171649	18171650	rs5013026	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	22q11.21	BCL2L13	rs5013026-T	0.5045	8E-9		0.02062524	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
723	chr22	18212922	18212923	rs395379	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q11.21		rs395379-G	NR	5E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
724	chr22	18226996	18226997	rs406388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q11.21		rs406388-?	NR	2E-9				NR [~ 8900000] (imputed)	N
724	chr22	18230963	18230964	rs1296685	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q11.21	BID	rs1296685-A	0.788849	2E-8		0.00949275	[0.0062-0.0128] unit decrease	Affymetrix [12370749]	N
724	chr22	18252441	18252442	rs183393610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q11.21	BID	rs183393610-A	0.00687000000000004	3E-11		0.09798394	[0.069-0.127] unit increase	Affymetrix [93095623] (imputed)	N
724	chr22	18252441	18252442	rs183393610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q11.21	BID	rs183393610-A	0.00686799999999999	1E-10		0.095440865	[0.067-0.124] unit increase	Affymetrix [93095623] (imputed)	N
724	chr22	18252441	18252442	rs183393610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs183393610-A	0.00682749	4E-12				Affymetrix, Illumina [24588908] (imputed)	N
724	chr22	18252441	18252442	rs183393610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q11.21	NR	rs183393610-A	0.007042	5E-14		0.094407	[0.07-0.119] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
724	chr22	18260703	18260704	rs10048897	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	22q11.21	MICAL3, BID	rs10048897-G	0.001	1E-6		34.08	[3.52-329.69]	Illumina [1556551]	N
724	chr22	18264830	18264831	rs5992838	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels in type 2 diabetes	450 European ancestry high cardiovascular risk elderly individuals	NA	22q11.21	intergenic	rs5992838-G	0.411	8E-6		0.147	[NR] unit decrease	Illumina [625127] (imputed)	N
724	chr22	18283246	18283247	rs5992105	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	22q11.21	NR	rs5992105-?		9E-6	(AA)			Illumina [up to 524000]	N
724	chr22	18283915	18283916	rs5992106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.21	MICAL3, XXbac-B461K10.4	rs5992106-A	0.327399	5E-13		0.017311247	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
724	chr22	18285298	18285299	rs378459	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q11.21		rs378459-C	0.29	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
724	chr22	18286671	18286672	rs369081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs369081-?	NR	2E-14				NR [~ 8900000] (imputed)	N
724	chr22	18316303	18316304	rs450960	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	22q11.21	MICAL3	rs450960-T	0.3	8E-7	(EA)	1.11	[1.07 -1.15]	Illumina [11381182] (imputed)	N
724	chr22	18319178	18319179	rs439231	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q11.21		rs439231-T	0.28	1E-8		5.67	z score increase	Affymetrix [9061022] (imputed)	N
724	chr22	18320057	18320058	rs2542334	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	22q11.21	MICAL3	rs2542334-T	0.33	2E-6	(conditional on rs9617650)	1.05	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
724	chr22	18325066	18325067	rs748779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.21		rs748779-?	NR	6E-10				NR [~ 8900000] (imputed)	N
725	chr22	18362572	18362573	rs9617633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.21	NR	rs9617633-A	NR	5E-17		0.0346	[0.027-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr22	18364365	18364366	rs569294870	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	22q11.21	MICAL3	rs569294870-A	0.9971	8E-6		0.4064	[0.23-0.58] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
725	chr22	18385943	18385944	rs12484267	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.21	NR	rs12484267-A	NR	9E-19		0.0282	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
725	chr22	18393932	18393933	rs5746492	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	22q11.21	NR	rs5746492-G	NR	4E-6		0.0954	[0.055-0.136] SD units decrease	NR [10700000] (imputed)	N
725	chr22	18396328	18396329	rs4819649	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q11.21		rs4819649-?	NR	4E-11		0.00656022	[0.0046-0.0085] unit decrease	NR [NR]	N
725	chr22	18397119	18397120	rs5747408	29534301	Nishida N	2018-03-13	Hepatology	Key HLA-DRB1-DQB1 haplotypes and role of the BTNL2 gene for response to a hepatitis B vaccine.	Response to hepatitis B vaccine	107 Japanese ancestry low responder individuals, 351 Japanese ancestry intermediate responder individuals, 735 Japanese ancestry high responder individuals	NA	22q11.21	MICAL3	rs5747408-?		9E-6		0.113	unit increase	Affymetrix [427664]	N
725	chr22	18400365	18400366	rs5746495	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x short total sleep time interaction (2df test)	2,990 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,300 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, at least 11,842 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,350 European ancestry controls, 4,047 Hispanic/Latino controls	at least 220 African American short sleepers, 326 East Asian ancestry short sleepers, up to 5,288 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 1,292 East Asian ancestry controls, up to 20,844 European ancestry controls, 10,062 Hispanic controls	22q11.21	MICAL3	rs5746495-?	NR	1E-9		0.00856	[0.0043-0.0128] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
725	chr22	18412928	18412929	rs13058527	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	22q11.21	NR	rs13058527-G	0.742578	6E-11		0.0144031	[0.01-0.019] unit increase	NR [NR]	N
725	chr22	18418164	18418165	rs9680696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	22q11.21		rs9680696-?	NR	2E-19				NR [~ 8900000] (imputed)	N
725	chr22	18421518	18421519	rs76013843	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.21	NR	rs76013843-A	NR	9E-10		0.0564	[0.038-0.074] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr22	18431945	18431946	rs139205844	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	22q11.21	MICAL3	rs139205844-?	NR	7E-6		0.963	[0.33-1.6] unit decrease	Illumina [at least 13000000] (imputed)	N
725	chr22	18431945	18431946	rs139205844	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	22q11.21	MICAL3	rs139205844-?	NR	3E-6		0.195	[0.075-0.315] unit decrease	Illumina [at least 13000000] (imputed)	N
725	chr22	18433993	18433994	rs5992134	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q11.21		rs5992134-?	NR	5E-8				NR [~ 8900000] (imputed)	N
725	chr22	18436943	18436944	rs415651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q11.21		rs415651-?	NR	1E-25				NR [~ 8900000] (imputed)	N
725	chr22	18439957	18439958	rs1076540	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	22q11.21	MICAL3	rs1076540-C	0.78	1E-16		4.8	[3.50-6.10] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
725	chr22	18441766	18441767	rs8143037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.21	MICAL3	rs8143037-C	0.563618	2E-11		0.014948617	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
725	chr22	18441812	18441813	rs9754514	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.21	MIR648	rs9754514-G	0.761462	3E-215		0.0185542	[0.017-0.02] unit increase	Affymetrix [13995440] (imputed)	N
725	chr22	18448112	18448113	rs1978968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	22q11.21	MICAL3	rs1978968-T	0.2367	2E-9		0.0177	[0.012-0.024] unit increase	Affymetrix [19819130] (imputed)	N
725	chr22	18448112	18448113	rs1978968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	22q11.21	MICAL3	rs1978968-T	0.2367	3E-13		0.0201	[0.015-0.025] unit increase	Affymetrix [19819130] (imputed)	N
725	chr22	18448112	18448113	rs1978968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	22q11.21	MICAL3	rs1978968-T	0.2367	1E-15		0.0223	[0.017-0.028] unit increase	Affymetrix [19819130] (imputed)	N
725	chr22	18448112	18448113	rs1978968	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	22q11.21	MICAL3	rs1978968-T	0.2367	9E-27		0.0293	[0.024-0.035] unit increase	Affymetrix [19819130] (imputed)	N
725	chr22	18448112	18448113	rs1978968	23509613	Kamboh MI	2013-02-24	Autoimmune Dis	Genome-wide association study of antiphospholipid antibodies.	Presence of antiphospholipid antibodies	183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI-negative controls	NA	22q11.21	MICAL3	rs1978968-?	0.2144	2E-6	(LAC)	2.235	[NR]	Affymetrix [906600]	N
725	chr22	18450286	18450287	rs11704827	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	22q11.21	MICAL3	rs11704827-T	0.2314	8E-13		0.033	[0.023-0.043] unit increase	Affymetrix [up to 27624732] (imputed)	N
725	chr22	18450286	18450287	rs11704827	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in never smokers (low FEV1 vs high FEV1)	9,745 European ancestry individuals with low FEV1 measurements, 4,902 European ancestry individuals with high FEV1 measurements	NA	22q11.21	MICAL3	rs11704827-A	0.769	2E-7		1.1709602	[1.1-1.24]	Affymetrix [28509962] (imputed)	N
725	chr22	18450286	18450287	rs11704827	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	22q11.21	MICAL3	rs11704827-T	NR	2E-9		0.138	[0.093-0.183] unit decrease	Affymetrix [28509962] (imputed)	N
725	chr22	18450608	18450609	rs11704636	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q11.21	MICAL3	rs11704636-?		2E-15		0.0638	[0.048-0.079] unit increase	Illumina [31500000] (imputed)	N
725	chr22	18450793	18450794	rs35598889	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q11.21	NR	rs35598889-C	0.232908	9E-15		0.00726312	[0.0053-0.0092] unit increase	Affymetrix [16582909] (imputed)	N
725	chr22	18450793	18450794	rs35598889	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q11.21	NR	rs35598889-C	0.232908	3E-15		0.0078813	[0.0057-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
725	chr22	18450841	18450842	rs56004212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	22q11.21		rs56004212-T	NR	3E-14		0.0222	[0.017-0.028] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
725	chr22	18450841	18450842	rs56004212	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q11.21		rs56004212-T	NR	3E-172		0.0737	[0.069-0.079] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
725	chr22	18451553	18451554	rs28434757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q11.21		rs28434757-A	NR	4E-9		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
725	chr22	18463253	18463254	rs34596632	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q11.21		rs34596632-C	NR	3E-8		0.0153	[0.01-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
725	chr22	18464066	18464067	rs398040444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	22q11.21		rs398040444-A	NR	3E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
725	chr22	18465676	18465677	rs9605481	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	22q11.21	NR	rs9605481-A	0.26	8E-9			[NR]	Affymetrix [9886854] (imputed)	N
725	chr22	18465676	18465677	rs9605481	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	22q11.21	NR	rs9605481-A	0.26	5E-10		0.92	[0.89-0.94]	Affymetrix [9886854] (imputed)	N
725	chr22	18465676	18465677	rs9605481	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	22q11.21	NR	rs9605481-A	0.26	2E-9			[NR]	Affymetrix [9886854] (imputed)	N
725	chr22	18465676	18465677	rs9605481	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	22q11.21	NR	rs9605481-A	0.26	4E-10		0.92	[0.89-0.94]	Affymetrix [9886854] (imputed)	N
725	chr22	18465676	18465677	rs9605481	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	22q11.21	NR	rs9605481-A	0.26	8E-7		0.92	[0.89-0.95]	Affymetrix [9886854] (imputed)	N
725	chr22	18468368	18468369	rs8139817	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	22q11.21	MICAL3	rs8139817-A		4E-8		0.143	unit decrease	Affymetrix [at least 2696785] (imputed)	N
725	chr22	18476604	18476605	rs11301702	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q11.21	NR	rs11301702-A	NR	5E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
725	chr22	18480170	18480171	rs9604818	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q11.21		rs9604818-?	NR	6E-13		0.00725059	[0.0053-0.0092] unit increase	NR [NR]	N
726	chr22	18482599	18482600	rs10854521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.21		rs10854521-?	NR	5E-8				NR [~ 8900000] (imputed)	N
726	chr22	18484642	18484643	rs5992957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q11.21	NR	rs5992957-A	0.511979	8E-11		0.012387	[0.0087-0.0161] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
726	chr22	18488882	18488883	rs9617650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.21	NR	rs9617650-C	NR	2E-101		0.0621	[0.056-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
726	chr22	18488882	18488883	rs9617650	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	22q11.21	MICAL3	rs9617650-G	0.79	4E-10		1.08	[1.06-1.11]	Affymetrix, Illumina [6224355] (imputed)	N
726	chr22	18597418	18597420	rs362021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	22q11.21		rs362021-A	NR	1E-8		0.0539	[0.035-0.073] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
726	chr22	18597501	18597502	rs464901	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	22q11.21	TUBA8	rs464901-T	0.665	2E-12		1.05	[1.04-1.07]	Illumina [34740186] (imputed)	N
726	chr22	18600582	18600583	rs465276	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	22q11.21	TUBA8	rs465276-G	0.62	2E-11	(EA)	1.06	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
726	chr22	18600582	18600583	rs465276	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	22q11.21	TUBA8	rs465276-G	0.61	2E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
726	chr22	18607637	18607638	rs112879682	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	22q11.21	TUBA8	rs112879682-A	0.024	7E-6		0.087	[0.05-0.124] unit decrease	Illumina [7358575] (imputed)	N
726	chr22	18609702	18609703	rs140202346	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	22q11.21		rs140202346-?	NR	7E-9		0.234667	[0.14-0.33] unit increase	NR [9800000] (imputed)	N
727	chr22	18626501	18626502	rs12170366	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Sum of carotid plaque area	727 European ancestry men, 550 European ancestry women	NA	22q11.21	NR	rs12170366-C	0.036378	7E-7	(women)	0.723079	[0.44-1.01] mm2 increase	Affymetrix [532676] (imputed)	N
727	chr22	18626501	18626502	rs12170366	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	22q11.21	NR	rs12170366-C	0.036378	8E-6	(women)	0.501213	[0.28-0.72] mm2 increase	Affymetrix [532676] (imputed)	N
727	chr22	18649355	18649356	rs4819670	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	22q11.21	USP18	rs4819670-T	0.21	6E-11		1.151	[1.11-1.19]	Illumina [11270530] (imputed)	N
729	chr22	18886813	18886814	rs144073979	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	22q11.21	NR	rs144073979-?	NR	1E-6	(AA)	0.8925	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
729	chr22	18892574	18892575	rs2080346	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	22q11.21	DGCR6	rs2080346-G	0.31	3E-10	(Pro)	0.26	[0.18-0.34] unit increase	Illumina [1288202] (imputed)	N
729	chr22	18897291	18897292	rs419208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q11.21	DGCR6	rs419208-A	0.623027	2E-9		0.013959087	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
729	chr22	18897291	18897292	rs419208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q11.21	DGCR6	rs419208-A	0.623018	6E-10		0.014473308	[0.0099-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
729	chr22	18905898	18905899	rs3970559	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q11.21	PRODH	rs3970559-G	0.979986	2E-11	(proline)	0.743	[0.53-0.96] unit decrease	Illumina [13039987] (imputed)	N
729	chr22	18905963	18905964	rs2904552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.21		rs2904552-?	NR	2E-8				NR [~ 8900000] (imputed)	N
729	chr22	18905963	18905964	rs2904552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q11.21		rs2904552-?	NR	4E-9				NR [~ 8900000] (imputed)	N
729	chr22	18905963	18905964	rs2904552	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.21		rs2904552-?	NR	8E-12		0.0233085	[0.016-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
729	chr22	18906838	18906839	rs3970551	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q11.21	PRODH	rs3970551-A	0.943651	2E-25	(proline)	0.574	[0.47-0.68] unit decrease	Illumina [13039987] (imputed)	N
729	chr22	18906838	18906839	rs3970551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs3970551-G	0.110137	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
729	chr22	18907996	18907997	rs5746638	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	22q11.21		rs5746638-C	0.715066	3E-11		0.0295886	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
729	chr22	18907996	18907997	rs5746638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.21	PRODH	rs5746638-T	0.284856	6E-9		0.014408982	[0.0095-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
729	chr22	18907996	18907997	rs5746638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q11.21	PRODH	rs5746638-T	0.284737	4E-12		0.017509568	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
729	chr22	18907996	18907997	rs5746638	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.21	PRODH	rs5746638-T	0.284831	2E-9		0.014818999	[0.0099-0.0197] unit decrease	Affymetrix [93095623] (imputed)	N
729	chr22	18907996	18907997	rs5746638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q11.21	NR	rs5746638-T	0.286394	2E-15		0.017222	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
729	chr22	18910354	18910355	rs5747933	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q11.21	PRODH	rs5747933-T	0.118912	4E-53	(proline)	0.591	[0.51-0.67] unit increase	Illumina [13039987] (imputed)	N
729	chr22	18910544	18910545	rs2277834	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	22q11.21	PRODH	rs2277834-T	0.1982	1E-63	(Proline)	0.2592	[0.23-0.29] unit increase	Illumina [~ 47000000] (imputed)	N
729	chr22	18911332	18911333	rs117935223	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	22q11.21	PRODH	rs117935223-A	NR	2E-17	(Proline)	0.619758	[0.48-0.76] unit increase	Illumina [up to 9281895] (imputed)	N
729	chr22	18911732	18911733	rs5746641	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	22q11.21		rs5746641-T	0.958168	6E-12		0.0700721	[0.05-0.09] unit increase	NR [11722792] (imputed)	N
729	chr22	18915281	18915282	rs5747934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	22q11.21		rs5747934-C	0.957715	1E-9		0.0603351	[0.041-0.08] unit increase	NR [11722792] (imputed)	N
729	chr22	18915281	18915282	rs5747934	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	22q11.21		rs5747934-C	0.957708	9E-9		0.0567781	[0.037-0.076] unit increase	NR [11722792] (imputed)	N
729	chr22	18915281	18915282	rs5747934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q11.21		rs5747934-T	NR	6E-10		0.0194	[0.013-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
729	chr22	18915346	18915347	rs2238732	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	22q11.21		rs2238732-C	0.957733	6E-10		0.0620455	[0.042-0.082] unit increase	NR [11722792] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free proline levels	1,338 Japanese ancestry individuals	665 Japanese ancestry individuals	22q11.21	PRODH	rs2238732-C	0.87	2E-54		0.65	[0.57-0.73] unit increase	Illumina [up to 1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-C		7E-11	(Ala)	0.25	[0.17-0.33] unit decrease	Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-C		1E-69	(Pro)	0.72	[0.64-0.8] unit increase	Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for twenty other PFAAs)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		7E-11	(Ala)	0.25	[0.17-0.33] unit decrease	Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		9E-41	(Pro (adjusted for Ser))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		7E-19	(Ala (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		7E-11	(Leu (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		6E-7	(Phe (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		6E-14	(Val (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		5E-9	(Orn (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		5E-10	(Tyr (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		3E-6	(His (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		2E-45	(Pro (adjusted for Phe))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		2E-43	(Pro (adjusted for Gln))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		1E-8	(Thr (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		1E-43	(Pro (adjusted for Asn))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		1E-39	(Pro (adjusted for Gly))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels (adjusted for one other PFAA)	1,338 Japanese ancestry individuals	NA	22q11.21	PRODH	rs2238732-?		1E-14	(Ile (adjusted for Pro))			Illumina [1288202] (imputed)	N
729	chr22	18915346	18915347	rs2238732	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	22q11.21	PRODH	rs2238732-T	0.0524	3E-39	(Proline)	0.1815	[0.15-0.21] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
729	chr22	18916179	18916180	rs759404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	22q11.21		rs759404-T	NR	5E-9		0.0221	[0.015-0.03] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
729	chr22	18916179	18916180	rs759404	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q11.21	NR	rs759404-C	0.932221	4E-8		0.00971995	[0.0064-0.013] unit increase	Affymetrix [16582909] (imputed)	N
729	chr22	18916179	18916180	rs759404	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q11.21	NR	rs759404-C	0.932221	3E-8		0.0107322	[0.0071-0.0144] unit increase	Affymetrix [16582965] (imputed)	N
729	chr22	18940887	18940888	rs71328282	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	22q11.21		rs71328282-A	0.979383	2E-6		0.0328239	[0.019-0.047] unit increase	Illumina [13900000] (imputed)	N
729	chr22	18959683	18959684	rs2540641	26068415	Draisma HHM	2015-06-12	Nat Commun	Genome-wide association study identifies novel genetic variants contributing to variation in blood metabolite levels.	Amino acid levels	up to 7,478 European ancestry individuals	1,182 European ancestry individuals	22q11.21	PRODH	rs2540641-A	0.0927	2E-59	(Proline)	0.147	[0.13-0.16] unit increase	Affymetrix, Illumina [at least 296619] (imputed)	N
729	chr22	18959683	18959684	rs2540641	25569235	Demirkan A	2015-01-08	PLoS Genet	Insight in genome-wide association of metabolite quantitative traits by exome sequence analyses.	Serum metabolite levels	2,118 Erasmus Rucphen (founder/genetic isolate) individuals	NA	22q11.21	PRODH	rs2540641-?	NR	1E-19	(Proline)			Illumina [~ 2500000] (imputed)	N
729	chr22	18959683	18959684	rs2540641	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q11.21	PRODH	rs2540641-A	0.08	3E-59	(proline)	0.063	[0.055-0.071] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
729	chr22	18959683	18959684	rs2540641	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR6	rs2540641-?	NR	7E-15	(proline)	0.49159074	[0.37-0.62] unit increase	Affymetrix [at least 2500000] (imputed)	N
729	chr22	18965627	18965628	rs11914070	26219847	Adams HH	2015-07-28	J Gerontol A Biol Sci Med Sci	Heritability and Genome-Wide Association Analyses of Human Gait Suggest Contribution of Common Variants.	Gait variability	2,946 individuals	NA	22q11.21	DGCR5	rs11914070-T	0.39	2E-7		0.136	[0.085-0.187] unit decrease	Illumina [6200000] (imputed)	N
729	chr22	18966616	18966617	rs2540647	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	22q11.21	PRODH	rs2540647-A	0.09	2E-70	(valine/proline)	0.059	[0.053-0.065] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
729	chr22	18972449	18972450	rs2023634	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	22q11.21	intergenic	rs2023634-?	NR	4E-21	(proline)	0.05435	[NR] unit increase	Affymetrix [655658]	N
729	chr22	18972449	18972450	rs2023634	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	22q11.21	PRODH	rs2023634-G	0.091	2E-22	(proline + 5 other traits)	0.113	[NR] unit increase	Affymetrix, Illumina [534665]	N
729	chr22	18981562	18981563	rs1210638	25897834	Biernacka JM	2015-04-21	Transl Psychiatry	The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response.	Response to serotonin reuptake inhibitors in major depressive disorder	298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases	NA	22q11.21	DGCR5	rs1210638-?	NR	6E-6	(Response)	1.33	[NR]	Illumina [~ 7000000] (imputed)	N
730	chr22	19058145	19058146	rs2238754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs2238754-?	NR	4E-8				NR [~ 8900000] (imputed)	N
730	chr22	19060411	19060412	rs7286581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q11.21	NR	rs7286581-A	NR	8E-10		0.0183	[0.012-0.024] unit increase	Affymetrix [9000000] (imputed)	N
730	chr22	19077048	19077049	rs2800960	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR14	rs2800960-?	NR	1E-6	(proline)	0.29655266	[0.18-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
730	chr22	19119750	19119751	rs1052763	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	22q11.21	TSSK2	rs1052763-T	0.183	3E-6	(ADP high 1)	0.154	[0.089-0.219] unit decrease	Illumina [129094]	N
730	chr22	19133604	19133605	rs715544	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	22q11.21		rs715544-G	0.907629	4E-8		0.0390251	[0.025-0.053] unit increase	NR [11722792] (imputed)	N
731	chr22	19147011	19147012	rs2871019	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR14	rs2871019-?	NR	8E-7	(TAG 56:7)	0.19649649	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
731	chr22	19147011	19147012	rs2871019	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR14	rs2871019-?	NR	8E-6	(TAG 58:8)	0.1795913	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
731	chr22	19147440	19147441	rs2096376	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR14	rs2096376-?	NR	3E-6	(TAG 56:8)	0.17051007	[0.099-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
731	chr22	19150260	19150261	rs2097789	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	SLC25A1	rs2097789-?	NR	6E-6	(TAG 56:6)	0.17614566	[0.1-0.252] unit decrease	Affymetrix [at least 2500000] (imputed)	N
731	chr22	19154521	19154522	rs807669	22286219	Kettunen J	2012-01-29	Nat Genet	Genome-wide association study identifies multiple loci influencing human serum metabolite levels.	Metabolite levels	8,330 European ancestry individuals	NA	22q11.21	SLC25A1	rs807669-?	NR	3E-16	(Citrate)	0.14	[0.1-0.18] unit decrease	Illumina [~ 7700000] (imputed)	N
731	chr22	19156116	19156117	rs712964	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	22q11.21	LINC01311	rs712964-?	NR	2E-10	(Cit)	0.06286246	NR unit increase	Illumina [609262]	N
731	chr22	19156116	19156117	rs712964	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	22q11.21	LINC01311	rs712964-?	NR	2E-6	(Cit)	0.058891196	NR unit increase	Illumina [609262]	N
731	chr22	19156116	19156117	rs712964	22916037	Inouye M	2012-08-16	PLoS Genet	Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.	Metabolite levels	6,608 European ancestry individuals	NA	22q11.21	GSC2, CLTCL1, SLC25A1	rs712964-?	0.41	3E-11				Illumina [~ 2000000] (imputed)	N
731	chr22	19157818	19157819	rs807672	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	22q11.21		rs807672-C	0.468559	3E-10		0.0257281	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
731	chr22	19159014	19159015	rs712959	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Fasting citrate	4,734 individuals	NA	22q11.21		rs712959-T	0.589264582	5E-14		0.156769	[0.12-0.2] mmol/l decrease	Illumina [7701709] (imputed)	N
731	chr22	19161934	19161935	rs2040771	27005778	Kettunen J	2016-03-23	Nat Commun	Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA.	Metabolite levels (small molecules and protein measures)	2,118 Erasmus Rucphen (founder/genetic isolate), 22,807 European ancestry individuals	NA	22q11.21	SLC25A1	rs2040771-T	0.48	1E-22	(Citrate)	0.09	[0.07-0.11] unit decrease	Affymetrix, Illumina, Perlegen [12133295] (imputed)	N
731	chr22	19162356	19162357	rs35412563	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	22q11.21	NR	rs35412563-G	0.95358	8E-7		1.0706638	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
731	chr22	19172005	19172006	rs1018764	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Citrate levels	115,068 European ancestry individuals	NA	22q11.21		rs1018764-T	0.368108	2E-108		0.0924989	[0.084-0.101] unit increase	NR [11722792] (imputed)	N
731	chr22	19228860	19228861	rs118025749	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.21	NR	rs118025749-A	0.01742	7E-9	(CD81)	0.01496	NR unit increase	Illumina [1671387] (imputed)	N
732	chr22	19287396	19287396	rs201226244	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	intergenic	rs201226244-T	NR	7E-7		0.4419	[0.27-0.61] unit increase	Illumina [~ 9000000] (imputed)	N
732	chr22	19287396	19287396	rs201226244	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	intergenic	rs201226244-T	NR	4E-6	(EA)	0.4215	[0.25-0.6] unit increase	Illumina [~ 9000000] (imputed)	N
732	chr22	19289714	19289715	rs12628854	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	CLTCL1, HIRA	rs12628854-G	0.02	4E-6	(EA)	0.4192	[0.24-0.6] unit increase	Illumina [~ 9000000] (imputed)	N
732	chr22	19292025	19292026	rs5993586	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	22q11.21	intergenic	rs5993586-T	0.072	7E-6		0.064	[0.037-0.091] unit decrease	Affymetrix [7947838] (imputed)	N
732	chr22	19388808	19388809	rs12628463	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	HIRA, CLTCL1	rs12628463-C	0.02	9E-7		0.4385	[0.27-0.61] unit increase	Illumina [~ 9000000] (imputed)	N
733	chr22	19467651	19467652	rs5748232	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q11.21		rs5748232-T	0.39	5E-8		5.47	z score increase	Affymetrix [9061022] (imputed)	N
733	chr22	19506123	19506124	rs13447287	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	CDC45	rs13447287-T	0.02	2E-7		0.4847	[0.31-0.66] unit increase	Illumina [~ 9000000] (imputed)	N
733	chr22	19506123	19506124	rs13447287	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	22q11.21	CDC45	rs13447287-T	0.02	1E-6	(EA)	0.4652	[0.28-0.65] unit increase	Illumina [~ 9000000] (imputed)	N
734	chr22	19537261	19537262	rs8140097	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	22q11.21	intergenic	rs8140097-T	NR	2E-6		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
734	chr22	19541405	19541406	rs5748282	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	22q11.21	NR	rs5748282-C	0.213	4E-6		0.198065	[0.11-0.28] unit decrease	Illumina [~ 6600000] (imputed)	N
734	chr22	19558474	19558475	rs5746779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	22q11.21		rs5746779-G	NR	5E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
734	chr22	19565256	19565257	rs2106139	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.21	NR	rs2106139-G	0.966774019767961	6E-6	(IGP56)	0.4353	[0.25-0.62] unit decrease	Illumina [~ 2500000] (imputed)	N
734	chr22	19567148	19567149	rs4819808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q11.21		rs4819808-G	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
734	chr22	19567148	19567149	rs4819808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q11.21	NR	rs4819808-G	NR	7E-10		0.0177	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
734	chr22	19610681	19610682	rs10854554	27576016	Zhao B	2016-08-30	Am J Respir Crit Care Med	A Genome-Wide Association Study to Identify Single-Nucleotide Polymorphisms for Acute Kidney Injury.	Acute kidney injury in critical illness	709 European ancestry cases, 619  European ancestry controls	206  European ancestry cases, 1,406  European ancestry controls	22q11.21	TBX1	rs10854554-?	NR	7E-7		1.49	[1.27-1.75]	Illumina [9076120] (imputed)	N
734	chr22	19639474	19639475	rs2188156	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	22q11.21	SEPT5	rs2188156-?		8E-6		0.8	[NR] unit increase	Illumina [6030476] (imputed)	N
735	chr22	19668056	19668057	rs9606132	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	22q11.21	SEPT5	rs9606132-C	0.17	3E-7	(female)	0.1	[0.061-0.139] unit decrease	Illumina [11973598] (imputed)	N
735	chr22	19669019	19669020	rs5993791	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	22q11.21		rs5993791-?	NR	8E-6	(clearcell)	3.94		Illumina [11595112] (imputed)	N
735	chr22	19676392	19676393	rs9606138	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q11.21	SEPT5	rs9606138-G	0.89977	3E-271		0.110735	[0.1-0.12] unit increase	NR [13737936] (imputed)	N
735	chr22	19677686	19677687	rs5746816	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q11.21	SEPT5	rs5746816-G	0.713973	5E-15		0.016487	[0.012-0.021] unit decrease	NR [13737936] (imputed)	N
735	chr22	19677948	19677949	rs202240051	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.21		rs202240051-?	NR	8E-16		0.0167332	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
735	chr22	19677948	19677949	rs202240051	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	22q11.21	SEPT5	rs202240051-C	0.1	2E-8		0.11	[0.071-0.149] unit decrease	Illumina [11973598] (imputed)	N
735	chr22	19679302	19679303	rs9606139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q11.21		rs9606139-?	NR	2E-321				NR [~ 8900000] (imputed)	N
735	chr22	19679302	19679303	rs9606139	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.21		rs9606139-?	NR	1E-295		0.122246	[0.12-0.13] unit increase	Affymetrix [20259828] (imputed)	N
735	chr22	19683381	19683382	rs5748404	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.21		rs5748404-?	NR	9E-45		0.0340798	[0.029-0.039] unit decrease	Affymetrix [20259828] (imputed)	N
735	chr22	19688233	19688234	rs147310751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	22q11.21	LINC00895, SEPT5	rs147310751-?	NR	1E-10		0.0485	[0.034-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
735	chr22	19691501	19691502	rs4819833	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	22q11.21	GP1BB, AC000093.3, TBX1, SEPT5	rs4819833-C	0.34	6E-8	(IGF2-DMR CpG01)			Illumina [515966]	N
735	chr22	19691892	19691893	rs141503849	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	22q11.21	Intergenic	rs141503849-T	NR	5E-7	(between families)	5.042	unit increase	Affymetrix [up to 15107142] (imputed)	N
735	chr22	19694332	19694333	rs9618670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	22q11.21		rs9618670-T	0.092222	1E-15		0.0457109	[0.035-0.057] unit decrease	Illumina [13478928] (imputed)	N
735	chr22	19694332	19694333	rs9618670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	22q11.21	NR	rs9618670-C	0.908185	2E-12		0.046122	[0.033-0.059] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
735	chr22	19699282	19699283	rs738135	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q11.21		rs738135-C	NR	2E-24		0.0206	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.339941	4E-41		0.035049293	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.339933	5E-30		0.029757835	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.339949	1E-73		0.047453158	[0.042-0.053] unit increase	Affymetrix [93095623] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs1059196-T	0.372944	4E-48				Affymetrix, Illumina [24588908] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q11.21	NR	rs1059196-T	0.34007	1E-44		0.031367	[0.027-0.036] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs1059196-C	0.653231	1E-99				Affymetrix, Illumina [17210439] (imputed)	N
735	chr22	19712093	19712094	rs1059196	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q11.21	NR	rs1059196-C	0.659006	5E-102		0.047977	[0.044-0.052] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
735	chr22	19712093	19712094	rs1059196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.3537	9E-22		0.04045529	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr22	19712093	19712094	rs1059196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.3539	1E-12		0.03049993	[0.022-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
735	chr22	19712093	19712094	rs1059196	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q11.21	SEPT5, GP1BB	rs1059196-T	0.3537	2E-21		0.04036983	[0.032-0.049] unit increase	Affymetrix [~ 2500000] (imputed)	N
735	chr22	19738354	19738355	rs1005133	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	22q11.21	SEPT5-GP1BB, TBX1	rs1005133-G	0.767	4E-8				NR [509413]	N
735	chr22	19749524	19749525	rs1978060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	22q11.21		rs1978060-G	NR	9E-9		0.1211	[0.08-0.162] unit increase	Affymetrix, Illumina [25837843] (imputed)	N
735	chr22	19749524	19749525	rs1978060	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q11.21	NR	rs1978060-G	NR	4E-14		1.054	[1.04-1.07]	Affymetrix, Illumina [29235255] (imputed)	N
735	chr22	19749524	19749525	rs1978060	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,327 Japanese ancestry cases, 73,884 Japanese ancestry controls	NA	22q11.21	TBX1	rs1978060-G	0.47	3E-10		1.16	[1.11-1.22]	Illumina [9332516] (imputed)	N
735	chr22	19749524	19749525	rs1978060	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	22q11.21	TBX1	rs1978060-G	0.6	3E-10		1.17	[1.14-1.2]	Illumina [at least 560000] (imputed)	N
735	chr22	19749524	19749525	rs1978060	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	22q11.21	TBX1	rs1978060-G	0.6	1E-19		1.09	[1.08-1.1]	Illumina [at least 560000] (imputed)	N
735	chr22	19749524	19749525	rs1978060	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	22q11.21	TBX1	rs1978060-?	NR	1E-19		1.089	[1.069-1.109]	Illumina [13754664] (imputed)	N
735	chr22	19752942	19752943	rs41298830	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q11.21	TBX1	rs41298830-A	0.77	5E-8		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
735	chr22	19752942	19752943	rs41298830	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q11.21	TBX1	rs41298830-?	NR	5E-8		1.0559661	[1.04-1.08]	Illumina [13757430] (imputed)	N
735	chr22	19757891	19757892	rs2238776	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	22q11.21	TBX1	rs2238776-G	0.8	2E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 16852405] (imputed)	N
735	chr22	19757891	19757892	rs2238776	25217961	Al Olama AA	2014-09-14	Nat Genet	A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.	Prostate cancer	34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls	NA	22q11.21	TBX1	rs2238776-G	0.8	2E-7	(EA)	1.09	[1.06-1.12]	Affymetrix, Illumina [up to 16852405] (imputed)	N
735	chr22	19757891	19757892	rs2238776	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-10 levels	704 African American individuals	425 West African individuals	22q11.21	TBX1	rs2238776-A	0.18	4E-9	(AA)	0.06	unit decrease	Affymetrix [5396780] (imputed)	N
735	chr22	19762428	19762428	rs34331122	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q11.21	NR	rs34331122-CTT	0.4557	7E-6	(EA)	0.0288	[0.016-0.041] unit decrease	Illumina [~ 11800000] (imputed)	N
735	chr22	19763977	19763978	rs41297816	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	22q11.21	TBX1, GNB1L	rs41297816-G	NR	1E-7		1.3513513	[NR]	Illumina [up to 9792010] (imputed)	N
736	chr22	19798444	19798445	rs62222096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q11.21		rs62222096-?	NR	4E-16				NR [~ 8900000] (imputed)	N
736	chr22	19799409	19799410	rs2073764	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	22q11.21	NR	rs2073764-G	0.96	2E-7		1.5873016	[NR]	Illumina [803202]	N
736	chr22	19842309	19842310	rs17534001	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	22q11.21	GNB1L, TXNRD2	rs17534001-G	0.919	5E-12		0.16	[0.11-0.21] unit increase	Affymetrix, Illumina [NR] (imputed)	N
736	chr22	19854005	19854006	rs8141433	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	22q11.21	TXNRD2	rs8141433-A	NR	3E-9		1.15	[1.11-1.20]	Affymetrix [up to 40000000] (imputed)	N
736	chr22	19856709	19856710	rs58714937	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	22q11.21	TXNRD2	rs58714937-C		8E-9		1.15	1.10-1.21	NR [NR] (imputed)	N
736	chr22	19856709	19856710	rs58714937	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	22q11.21	TXNRD2	rs58714937-C	NR	1E-13		1.15	1.11-1.20	Affymetrix [at least 665500] (imputed)	N
736	chr22	19860976	19860977	rs76945759	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	22q11.21	NR	rs76945759-G		2E-8		0.15	[0.091-0.209] unit increase	NR [NR]	N
736	chr22	19860976	19860977	rs76945759	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	22q11.21	TXNRD2	rs76945759-?	NR	1E-9		0.1492	[0.1-0.2] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
736	chr22	19867275	19867276	rs34175429	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	22q11.21	TXNRD2	rs34175429-T	NR	3E-9		1.15754	[1.11-1.21]	Illumina [NR] (imputed)	N
736	chr22	19867275	19867276	rs34175429	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	22q11.21	TXNRD2	rs34175429-T	NR	9E-9		1.14878	[1.1-1.2]	Illumina [NR] (imputed)	N
736	chr22	19867770	19867771	rs1139795	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	22q11.21	TXNRD2	rs1139795-T	NR	2E-13		0.866321	[0.83-0.9]	Affymetrix, Illumina [14822926] (imputed)	N
736	chr22	19870146	19870147	rs8141610	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	22q11.21	TXNRD2	rs8141610-T	NR	3E-12		0.0711	unit decrease	Illumina [15409056] (imputed)	N
736	chr22	19872644	19872645	rs35934224	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,853 European ancestry cases, 33,480 European ancestry controls	2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases,  2,543 Singaporean Chinese ancestry controls	22q11.21	TXNRD2	rs35934224-C	0.84	9E-11	(European)	1.28	NR	Affymetrix, Illumina [6425680] (imputed)	N
736	chr22	19872644	19872645	rs35934224	26752265	Bailey JN	2016-01-11	Nat Genet	Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,853 European ancestry cases, 33,480 European ancestry controls	2,137 European ancestry cases, 6,699 European ancestry controls, 1,037 Singaporean Chinese ancestry cases,  2,543 Singaporean Chinese ancestry controls	22q11.21	TXNRD2	rs35934224-C	0.84	4E-11		1.28	NR	Affymetrix, Illumina [6425680] (imputed)	N
736	chr22	19872934	19872935	rs73148965	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	22q11.21	TXNRD2	rs73148965-G	0.85	5E-9				Affymetrix, Illumina [8002429] (imputed)	N
736	chr22	19872934	19872935	rs73148965	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	22q11.21	TXNRD2	rs73148965-G	0.85	9E-12		1.11	NR	Affymetrix, Illumina [8002429] (imputed)	N
736	chr22	19872934	19872935	rs73148965	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	22q11.21	TXNRD2	rs73148965-G	0.85	1E-6		1.13	NR	Affymetrix [at least 8002429] (imputed)	N
736	chr22	19879636	19879637	rs3804047	24847357	Ye Z	2014-05-09	Front Genet	Genome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections.	Staphylococcus aureus infection	309 European ancestry cases, 2,925 European ancestry controls	NA	22q11.21	TXNRD2	rs3804047-C	0.281143	3E-6		1.52	[1.27-1.81]	Illumina [508921]	N
736	chr22	19889824	19889825	rs3788317	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	22q11.21		rs3788317-T	0.22993	7E-6		0.035789	[0.02-0.051] unit increase	Affymetrix [15580782] (imputed)	N
736	chr22	19889824	19889825	rs3788317	22922875	Vithana EN	2012-08-26	Nat Genet	Genome-wide association analyses identify three new susceptibility loci for primary angle closure glaucoma.	Glaucoma (primary angle closure)	1,281 East Asian ancestry cases, 1,987 East Asian ancestry controls, 337 South Indian ancestry cases, 2,538 South Indian ancestry controls, 236 South East Asian ancestry cases, 5,083 South East Asian ancestry controls	1,545 East Asian ancestry cases, 3,756 East Asian ancestry controls, 165 Saudi Arabian ancestry cases, 175 Saudi Arabian ancestry controls, 127 European ancestry cases, 4,703 European ancestry controls, 80 Indian ancestry cases, 309 Indian ancestry controls	22q11.21	TXNRD2	rs3788317-?	NR	2E-7		1.22	[NR]	Illumina [493501]	N
736	chr22	19897254	19897256	rs529822645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	22q11.21	TXNRD2	rs529822645-T	0.0021	4E-6		0.9331	[0.54-1.33] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
737	chr22	19948336	19948337	rs4646312	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	22q11.21	NR	rs4646312-C	NR	8E-6		1.25	[NR]	Illumina [up to 9792010] (imputed)	N
737	chr22	19949012	19949013	rs165722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	22q11.21		rs165722-T	NR	3E-8		0.0274	[0.018-0.037] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
737	chr22	19949012	19949013	rs165722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	22q11.21	NR	rs165722-T	NR	2E-9		0.0144	[0.0097-0.0191] unit increase	Affymetrix [9000000] (imputed)	N
737	chr22	19949012	19949013	rs165722	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q11.21	NR	rs165722-C	0.484285	3E-9		0.0114996	[0.0077-0.0153] unit decrease	Affymetrix [15000001]	N
737	chr22	19949012	19949013	rs165722	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q11.21	NR	rs165722-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
737	chr22	19949012	19949013	rs165722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q11.21		rs165722-?	NR	5E-9				NR [~ 8900000] (imputed)	N
737	chr22	19951270	19951271	rs4680	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.21	NR	rs4680-A	0.4948	7E-19	(COMT)	0.1787	NR unit decrease	Illumina [1671387] (imputed)	N
737	chr22	19951270	19951271	rs4680	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	22q11.21	COMT	rs4680-G	0.5	5E-54	(X-12708, X-21785)	0.012	[0.01-0.014] unit increase	Illumina [7750367] (imputed)	N
737	chr22	19951270	19951271	rs4680	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.21	COMT	rs4680-G	0.5	2E-59	(X - 21785)	0.221	[0.19-0.25] unit increase	Illumina [7750367] (imputed)	N
737	chr22	19951270	19951271	rs4680	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.21	COMT	rs4680-G	0.5	2E-28	(X - 12708)	0.228	[0.19-0.27] unit increase	Illumina [7750367] (imputed)	N
737	chr22	19951270	19951271	rs4680	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.21	COMT	rs4680-G	0.5	2E-11	(X - 12707)	0.163	[0.12-0.21] unit decrease	Illumina [7750367] (imputed)	N
737	chr22	19951270	19951271	rs4680	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q11.21	COMT	rs4680-A	0.51	5E-178	(X-11593--O-methylascorbate)	0.049	[0.045-0.053] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
737	chr22	19951270	19951271	rs4680	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q11.21	COMT	rs4680-A	0.51	1E-13	(X-01911)	0.044	[0.032-0.056] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
737	chr22	19951270	19951271	rs4680	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	22q11.21	COMT	rs4680-?	NR	6E-11	(X-01911)	0.07037	[NR] unit increase	Affymetrix [655658]	N
737	chr22	19951270	19951271	rs4680	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	22q11.21	COMT	rs4680-?	NR	1E-48	(X-11593)	0.04945	[NR] unit increase	Affymetrix [655658]	N
737	chr22	19952560	19952561	rs165774	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in bipolar disorder	3,264 European ancestry attempters, 5,500 European ancestry nonattempters	NA	22q11.21	NR	rs165774-A	0.33	9E-6		1.18	1.1-1.27	NR [8807005] (imputed)	N
737	chr22	19953058	19953059	rs165895	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q11.21		rs165895-?	NR	6E-15				NR [~ 8900000] (imputed)	N
737	chr22	19955691	19955692	rs9332377	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.21	NR	rs9332377-?	NR	2E-6				Affymetrix [NR]	N
737	chr22	19955691	19955692	rs9332377	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	22q11.21	NR	rs9332377-T	NR	7E-6		1.78	[1.39-2.29]	Illumina [510856]	N
737	chr22	19956013	19956014	rs117222687	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	22q11.21	ARVCF, COMT	rs117222687-C	0.02	3E-8	(AA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
737	chr22	19957762	19957763	rs165655	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q11.21	Intergenic	rs165655-A	0.692	3E-10	(MTAG)	0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
737	chr22	19958668	19958669	rs165849	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q11.21	ARVCF	rs165849-A	0.6975	5E-14		0.0157	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
737	chr22	19960183	19960184	rs71313931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	22q11.21		rs71313931-G	NR	5E-10		0.0424	[0.029-0.056] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
737	chr22	19960183	19960184	rs71313931	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	22q11.21	ARVCF	rs71313931-?	NA	3E-11		2.08	[1.47-2.69] unit decrease	Affymetrix [5541230] (imputed)	N
737	chr22	19960183	19960184	rs71313931	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	22q11.21	ARVCF	rs71313931-G	0.283681	5E-8		0.04886963	[0.031-0.066] unit increase	Affymetrix [7288503] (imputed)	N
737	chr22	19960183	19960184	rs71313931	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	22q11.21	ARVCF	rs71313931-C	0.73	3E-9		2.23	[1.5-2.96] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
737	chr22	19960197	19960198	rs71313932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q11.21	ARVCF	rs71313932-C	0.285408	1E-21		0.024001133	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19960605	19960606	rs2240715	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q11.21	Intergenic	rs2240715-G	0.6918	5E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
737	chr22	19967979	19967980	rs12628032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q11.21		rs12628032-T	NR	5E-8		0.0122	[0.0079-0.0165] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
737	chr22	19967979	19967980	rs12628032	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	22q11.21	ARVCF	rs12628032-T	0.2277	4E-7	(Japanese)	0.3111	[0.19-0.43] unit increase	Illumina [6200000] (imputed)	N
737	chr22	19967979	19967980	rs12628032	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	22q11.21	ARVCF	rs12628032-T	0.3	6E-12		0.24	[0.18-0.3] unit increase	Affymetrix [~ 9800000] (imputed)	N
737	chr22	19968970	19968971	rs2073748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.21	ARVCF	rs2073748-A	0.3492	1E-9		0.014134375	[0.0096-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19968970	19968971	rs2073748	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q11.21	ARVCF	rs2073748-A	0.3491	1E-10		0.02442278	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr22	19969695	19969696	rs2240716	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q11.21	NR	rs2240716-C	0.7069	5E-10		0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
737	chr22	19969695	19969696	rs2240716	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q11.21	ARVCF	rs2240716-T	0.2917	4E-14		0.2045	[0.15-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
737	chr22	19970501	19970502	rs1990277	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q11.21		rs1990277-?	NR	3E-8				NR [NR]	N
737	chr22	19970546	19970547	rs2238781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs2238781-T	0.327066	7E-22				Affymetrix, Illumina [24649327] (imputed)	N
737	chr22	19970546	19970547	rs2238781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs2238781-T	0.335006	1E-20				Affymetrix, Illumina [23467995] (imputed)	N
737	chr22	19970582	19970583	rs2238782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q11.21	NR	rs2238782-G	0.350424	2E-22		0.019942	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
737	chr22	19971551	19971552	rs758374	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls	NA	22q11.21	ARVCF	rs758374-C	0.304289	4E-9		0.11363902	[0.076-0.152] unit increase	Affymetrix [7288503] (imputed)	N
737	chr22	19971551	19971552	rs758374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs758374-?	NR	9E-25				NR [~ 8900000] (imputed)	N
737	chr22	19971551	19971552	rs758374	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q11.21	ARVCF	rs758374-C	0.71	8E-9		0.2097	[0.14-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
737	chr22	19972451	19972452	rs2238783	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	22q11.21	ARVCF	rs2238783-G	0.3504	9E-11		0.02435424	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr22	19972451	19972452	rs2238783	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.21	ARVCF	rs2238783-G	0.3504	1E-9		0.02284019	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr22	19973204	19973205	rs917479	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q11.21		rs917479-T	0.65	4E-10				Affymetrix [10369434] (imputed)	N
737	chr22	19973241	19973241	rs140486316	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q11.21	NR	rs140486316-I	0.350308	7E-24		0.021604	[0.017-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
737	chr22	19974031	19974032	rs4819526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	22q11.21		rs4819526-C	NR	1E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
737	chr22	19974031	19974032	rs4819526	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q11.21		rs4819526-C	NR	4E-13		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
737	chr22	19974653	19974654	rs7292055	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q11.21		rs7292055-?	NR	4E-8				NR [NR]	N
737	chr22	19974653	19974654	rs7292055	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q11.21		rs7292055-?	NR	2E-8				NR [NR]	N
737	chr22	19975443	19975444	rs2238786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q11.21		rs2238786-G	NR	4E-16		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
737	chr22	19975443	19975444	rs2238786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	22q11.21		rs2238786-G	NR	4E-11		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
737	chr22	19976405	19976406	rs2238787	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	22q11.21	NR	rs2238787-A	0.1963	1E-8	(East Asian)	0.481	[0.32-0.65] unit increase	Illumina [6200000] (imputed)	N
737	chr22	19976844	19976845	rs756653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q11.21		rs756653-?	NR	5E-10				NR [~ 8900000] (imputed)	N
737	chr22	19977646	19977647	rs2012714	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.21	ARVCF	rs2012714-T	0.331033	2E-21		0.022300478	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19977646	19977647	rs2012714	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	22q11.21	ARVCF	rs2012714-T	0.2	3E-7	(Japanese)	0.4791	[0.3-0.66] unit increase	Illumina [6200000] (imputed)	N
737	chr22	19977646	19977647	rs2012714	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	22q11.21	ARVCF	rs2012714-T	0.1992	2E-10	(East Asian)	0.3575	[0.25-0.47] unit increase	Illumina [6200000] (imputed)	N
737	chr22	19977646	19977647	rs2012714	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	22q11.21	ARVCF	rs2012714-C		1E-6		0.222	unit decrease	Affymetrix [at least 2696785] (imputed)	N
737	chr22	19977646	19977647	rs2012714	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	22q11.21	ARVCF	rs2012714-C		3E-9		0.182	unit decrease	Affymetrix [at least 2696785] (imputed)	N
737	chr22	19978021	19978022	rs4819527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.21	ARVCF	rs4819527-T	0.331481	6E-22		0.022636177	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19978021	19978022	rs4819527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.21	ARVCF	rs4819527-T	0.331435	8E-18		0.020214899	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19983212	19983213	rs2238792	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q11.21	ARVCF	rs2238792-T	0.286185	7E-17		0.02077377	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
737	chr22	19983212	19983213	rs2238792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs2238792-T	0.268389	5E-21				Affymetrix, Illumina [23472807] (imputed)	N
737	chr22	19983212	19983213	rs2238792	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q11.21	NR	rs2238792-T	0.286525	1E-23		0.021802	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
737	chr22	19984012	19984013	rs1034564	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q11.21	ARVCF	rs1034564-T	0.286065	8E-26		0.026242938	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
737	chr22	19984012	19984013	rs1034564	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q11.21	ARVCF	rs1034564-T	0.2871	1E-11		0.02716628	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr22	19984210	19984211	rs1034565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q11.21		rs1034565-T	NR	4E-15		0.0194	[0.015-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
737	chr22	19984210	19984211	rs1034565	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs1034565-T	0.257531	3E-9				Affymetrix, Illumina [19905671] (imputed)	N
737	chr22	19984210	19984211	rs1034565	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q11.21		rs1034565-?	NR	4E-11				NR [~ 8900000] (imputed)	N
737	chr22	19984276	19984277	rs1034566	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	22q11.21	ARVCF	rs1034566-T	NR	3E-8		2.128	[1.38-2.88] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
737	chr22	19987201	19987202	rs7285377	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q11.21	NR	rs7285377-T	0.284156	2E-10		0.014495	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
737	chr22	19988166	19988167	rs4819852	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	22q11.21	ARVCF	rs4819852-A	0.109	1E-6	(Japanese)	0.3993	[0.24-0.56] unit increase	Illumina [6200000] (imputed)	N
737	chr22	19988166	19988167	rs4819852	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	22q11.21	ARVCF	rs4819852-A	0.294	4E-7	(EA, initial)	0.266	[0.16-0.37] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
737	chr22	19988166	19988167	rs4819852	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	22q11.21	ARVCF	rs4819852-A	0.294	1E-13		0.261	[0.19-0.33] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
737	chr22	19993298	19993299	rs6518596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q11.21		rs6518596-?	NR	7E-8				NR [~ 8900000] (imputed)	N
737	chr22	20004099	20004100	rs144191434	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	22q11.21	Intergenic	rs144191434-A	NR	2E-7	(between families)	5.189	unit increase	Affymetrix [up to 15107142] (imputed)	N
737	chr22	20009927	20009928	rs4819854	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	22q11.21	TANGO2	rs4819854-C	0.2768	9E-7		2.1502	NR ?m increase	Affymetrix, Illumina [9249813] (imputed)	N
737	chr22	20010849	20010850	rs4819855	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q11.21	TANGO2	rs4819855-G	0.7357	1E-9		0.096	[0.065-0.127] unit decrease	Affymetrix [~ 11900000] (imputed)	N
737	chr22	20011158	20011159	rs9605049	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	22q11.21	TANGO2	rs9605049-T	0.277	2E-8	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
737	chr22	20011158	20011159	rs9605049	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	22q11.21	TANGO2	rs9605049-T	0.277	4E-6		0.1336	NR mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
737	chr22	20011158	20011159	rs9605049	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q11.21	TANGO2	rs9605049-T	0.2652	5E-12		0.02864601	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
737	chr22	20025651	20025652	rs73150856	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	22q11.21	NR	rs73150856-?		6E-6		0.62	[0.50-0.76]	Illumina [539473] (imputed)	N
737	chr22	20031963	20031964	rs455049	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.21	NR	rs455049-?	NR	8E-7				Affymetrix [NR]	N
737	chr22	20043629	20043630	rs76926687	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	22q11.21	TANGO2	rs76926687-T	0.017	5E-6	(adjusted for severity)	2.72	[2.29-3.15]	Affymetrix, Illumina [~ 8500000] (imputed)	N
737	chr22	20045418	20045419	rs174877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	22q11.21		rs174877-?	NR	2E-8				NR [~ 8900000] (imputed)	N
738	chr22	20066610	20066611	rs9606233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q11.21	NR	rs9606233-C	0.40471500000000005	9E-12		0.00540746	[0.0037-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
738	chr22	20066610	20066611	rs9606233	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q11.21	NR	rs9606233-C	0.40471500000000005	2E-15		0.00711017	[0.0052-0.009] unit increase	Affymetrix [16582965] (imputed)	N
738	chr22	20091755	20091756	rs1633418	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q11.21	DGCR8	rs1633418-T	0.391187	2E-8		0.00792126	[0.0052-0.0107] unit increase	Affymetrix [12370749]	N
738	chr22	20091832	20091833	rs112367533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q11.21	Intergenic	rs112367533-G	0.8078	3E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
738	chr22	20096171	20096172	rs7364132	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (2df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 47,916 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	22q11.21		rs7364132-A	0.16	2E-8	(African, trans-ethnic)	0.066	[0.041-0.091] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
738	chr22	20096171	20096172	rs7364132	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (2df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 47,916 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	22q11.21		rs7364132-?	NR	8E-8	(African, trans-ethnic)	0.06787	[0.041-0.094] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
738	chr22	20096171	20096172	rs7364132	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (1df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 60,675 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	22q11.21		rs7364132-A	0.16	9E-7	(African, trans-ethnic)	0.0651	[0.039-0.091] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
738	chr22	20096171	20096172	rs7364132	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (ever vs never smokers) interaction (1df test)	11,735 African ancestry ever smoker individuals, 1,172 Asian ancestry ever smoker individuals, 42,899 European ancestry ever smoker individuals, 2,582 Hispanic ever smoker individuals, 11,777 African ancestry never smoker individuals, 3,477 Asian ancestry never smoker individuals, 34,148 European ancestry never smoker individuals, 4,123 Hispanic never smoker individuals	1,710 African ancestry ever smoker individuals, 54,217 Asian ancestry ever smoker individuals, 11,550 European ancestry ever smoker individuals, 5,915 Hispanic ever smoker individuals, 2,040 African ancestry never smoker individuals, 57,704 Asian ancestry never smoker individuals, 60,675 European ancestry never smoker individuals, 8,795 Hispanic never smoker individuals	22q11.21		rs7364132-?	NR	1E-6	(African, trans-ethnic)	0.0666	[0.04-0.094] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
738	chr22	20096171	20096172	rs7364132	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels in ever smokers	11,735 African ancestry individuals, 1,172 Asian ancestry individuals, 42,899 European ancestry individuals, 2,582 Hispanic individuals	NA	22q11.21		rs7364132-?	NR	8E-8	(African, trans-ethnic)	0.0528	[0.034-0.072] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
738	chr22	20098358	20098359	rs1640299	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	22q11.21	DGCR8	rs1640299-?	NR	3E-13	(X-11593)	0.02459	[NR] unit increase	Affymetrix [655658]	N
738	chr22	20098543	20098544	rs417309	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	DGCR8	rs417309-?	NR	3E-6	(CE 20:4)	0.2834099	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
738	chr22	20109324	20109325	rs2238799	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q11.21	NR	rs2238799-G	0.38954900000000003	1E-8		0.00539658	[0.0031-0.0077] unit increase	Affymetrix [16582621] (imputed)	N
738	chr22	20109324	20109325	rs2238799	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q11.21	NR	rs2238799-G	0.38954900000000003	6E-11		0.00708768	[0.0046-0.0096] unit increase	Affymetrix [16582614] (imputed)	N
738	chr22	20134349	20134350	rs1974653	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q11.21	NR	rs1974653-A	NR	8E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
738	chr22	20142512	20142513	rs11913445	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	22q11.21	CCDC188	rs11913445-C	0.83	2E-9	(model 3)	0.017	unit increase	Affymetrix [11800000] (imputed)	N
738	chr22	20152861	20152862	rs62218079	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (remission) in treatment resistant depression	255 European ancestry remitters, 272 European ancestry non-remitters	NA	22q11.21	NR	rs62218079-?		1E-5		2.7539	[2.3-3.2]	NR [NR] (imputed)	N
738	chr22	20156414	20156415	rs28384	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	22q11.21	NR	rs28384-?	NR	1E-6		1.221	[1.14-1.3]	Illumina [NR] (imputed)	N
738	chr22	20172312	20172313	rs701447	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.21	RTN4R	rs701447-C	0.59265625	8E-25	(RTN4R, 5105_2_3)	0.24886268	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
738	chr22	20174852	20174853	rs75766	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RTN4R	5,365 Icelandic ancestry individuals	NA	22q11.21		rs75766-C	0.2748	2E-44		0.283267	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
738	chr22	20174852	20174853	rs75766	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.21	RTN4R	rs75766-A	0.748	5E-35	(Reticulon-4 receptor, RTN4R.5105.2.3)	0.35	[0.29-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
738	chr22	20185010	20185011	rs665780	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RTN4R	5,365 Icelandic ancestry individuals	NA	22q11.21		rs665780-C	0.1902	4E-26		0.244791	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
739	chr22	20211138	20211139	rs8142885	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RTN4R	5,365 Icelandic ancestry individuals	NA	22q11.21		rs8142885-C	0.1547	3E-6		0.119126	[0.069-0.169] unit decrease	Illumina [7506463] (imputed)	N
739	chr22	20228541	20228542	rs701428	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.21	NR	rs701428-G	0.623	1E-23	(Reticulon-4 receptor, RTN4R.5105.2.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
739	chr22	20228541	20228542	rs701428	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q11.21	RTN4R	rs701428-G	0.472	2E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
739	chr22	20235199	20235200	rs696880	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RTN4R	5,365 Icelandic ancestry individuals	NA	22q11.21		rs696880-G	0.366	2E-36		0.235067	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
743	chr22	20768890	20768891	rs9610447	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	22q11.21	RNU6-225P	rs9610447-C	0.2523	6E-14	(SCARF2)	0.46285	[0.34-0.58] unit decrease	Illumina [8683751] (imputed)	N
743	chr22	20768890	20768891	rs9610447	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q11.21	NR	rs9610447-C	0.250474	2E-10		0.022925	[0.016-0.03] unit decrease	NR [19129689] (imputed)	N
743	chr22	20775034	20775034	rs361638	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q11.21	SCARF2	rs361638-T	0.8028	5E-19		0.0216	[0.017-0.026] unit increase	Affymetrix [18391927] (imputed)	N
743	chr22	20775555	20775556	rs738086	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.21	SCARF2	rs738086-T	0.811	5E-21	(Scavenger receptor class F member 2, SCARF2.8956.96.3)	0.3	[0.24-0.36] unit increase	Affymetrix [10572788] (imputed)	N
743	chr22	20778065	20778066	rs738084	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	22q11.21		rs738084-A	0.12	2E-8		0.038	L decrease	Affymetrix [NR] (imputed)	N
743	chr22	20778065	20778066	rs738084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q11.21		rs738084-?	NR	4E-27				NR [~ 8900000] (imputed)	N
743	chr22	20779821	20779822	rs874100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.21		rs874100-?	NR	3E-25				NR [~ 8900000] (imputed)	N
743	chr22	20786487	20786488	rs5763025	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q11.21		rs5763025-A	0.18	4E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
743	chr22	20789045	20789046	rs9610925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q11.21		rs9610925-A	NR	1E-17		0.0137	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
743	chr22	20790722	20790723	rs9610955	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	22q11.21	SCARF2	rs9610955-C	0.1972	7E-7		0.0158	[0.0095-0.0221] unit decrease	Affymetrix [19819130] (imputed)	N
743	chr22	20790722	20790723	rs9610955	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	22q11.21	SCARF2	rs9610955-C	0.1972	3E-19		0.0269	[0.021-0.033] unit decrease	Affymetrix [19819130] (imputed)	N
743	chr22	20790722	20790723	rs9610955	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	22q11.21	SCARF2	rs9610955-C	0.1972	7E-11		0.0192	[0.014-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
743	chr22	20797288	20797289	rs5763911	23393555	Jensen RA	2013-02-05	PLoS One	Genome-wide association study of retinopathy in individuals without diabetes.	Retinopathy in non-diabetics	19,411 European ancestry individuals	NA	22q11.21	KLHL22	rs5763911-T	0.96	6E-6		0.52	[0.3-0.74] unit decrease	Illumina [2675979] (imputed)	N
744	chr22	20854160	20854161	rs4820216	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		22q11.21	KLHL22, MED15	rs4820216-T	0.15	2E-9	(EA)	0.004	[0.0028-0.0052] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
744	chr22	20854160	20854161	rs4820216	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		22q11.21	KLHL22, MED15	rs4820216-T	0.13	3E-10		0.003	[0.002-0.004] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
744	chr22	20854160	20854161	rs4820216	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		22q11.21		rs4820216-?	NR	7E-6	(EA)	18.24	[10.3-26.18] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
744	chr22	20883448	20883449	rs1771149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q11.21	Intergenic	rs1771149-T	0.2114	2E-10	(MTAG)	0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr22	20883448	20883449	rs1771149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q11.21	Intergenic	rs1771149-T	0.2114	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
744	chr22	20883448	20883449	rs1771149	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q11.21	Intergenic	rs1771149-T	0.2115	5E-9	(MTAG)	0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
744	chr22	20959406	20959407	rs528634	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.21	PI4KA	rs528634-?	NR	2E-6	(3-hydroxyphenylacetic acid)	2.7409627	[1.62-3.87] unit decrease	Affymetrix [at least 2500000] (imputed)	N
745	chr22	21017918	21017919	rs617767	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	22q11.21	NR	rs617767-?		4E-10	(Superior corona radiata)			NR [8955960] (imputed)	N
745	chr22	21022868	21022869	rs4822429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	22q11.21		rs4822429-C	NR	7E-9		0.0637	[0.042-0.085] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
745	chr22	21023435	21023436	rs139808797	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	22q11.21	FAM108A5P	rs139808797-?	NR	2E-7		1.36	[1.21-1.53]	Affymetrix, Illumina [39235000] (imputed)	N
745	chr22	21046796	21046797	rs8136537	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q11.21		rs8136537-G	0.45	2E-11		6.69	z score increase	Affymetrix [9061022] (imputed)	N
745	chr22	21064058	21064059	rs28754290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.21	PI4KA	rs28754290-G	0.315372	2E-9		0.01476208	[0.0099-0.0196] unit increase	Affymetrix [93095623] (imputed)	N
745	chr22	21100841	21100842	rs2329483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs2329483-T	0.397095	4E-13				Affymetrix, Illumina [23467995] (imputed)	N
745	chr22	21100841	21100842	rs2329483	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q11.21	NR	rs2329483-T	0.381998	2E-15		0.015586	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
746	chr22	21110926	21110927	rs190123700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q11.21		rs190123700-A	NR	2E-10		0.0416	[0.029-0.054] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
746	chr22	21118023	21118024	rs4822496	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q11.21		rs4822496-G	0.48	1E-18		8.81	z score increase	Affymetrix [9061022] (imputed)	N
746	chr22	21118023	21118024	rs4822496	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q11.21	NR	rs4822496-G	0.4432	7E-15				NR [9056863] (imputed)	N
746	chr22	21127032	21127033	rs117357866	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs117357866-G	0.0130492	1E-11				Affymetrix, Illumina [24588908] (imputed)	N
746	chr22	21129062	21129063	rs361993	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q11.21		rs361993-C	NR	5E-8		0.0136	[0.0087-0.0185] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
746	chr22	21168588	21168589	rs178050	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	22q11.21	PI4KA	rs178050-A	NR	7E-6		1.66	[1.33-2.07]	Affymetrix [426851] (imputed)	N
746	chr22	21180487	21180488	rs146132285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs146132285-G	0.994706	7E-14				Affymetrix, Illumina [17210439] (imputed)	N
746	chr22	21231860	21231861	rs150481896	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	22q11.21		rs150481896-A	NR	4E-7		2.1705		Illumina [up to 7574753] (imputed)	N
747	chr22	21246810	21246811	rs362171	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.21	AC007308.7	rs362171-G	0.322041	2E-11		0.016003111	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
747	chr22	21247047	21247048	rs178083	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q11.21	NR	rs178083-C	0.4476	1E-9				NR [9056863] (imputed)	N
747	chr22	21277252	21277253	rs147739461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q11.21	CRKL	rs147739461-A	0.00512199999999996	1E-12		0.112460315	[0.081-0.143] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr22	21279431	21279432	rs139459946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q11.21	CRKL	rs139459946-T	0.0051	7E-13		0.1828325	[0.13-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
747	chr22	21279856	21279857	rs117292351	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q11.21	NR	rs117292351-A	0.994873	6E-15		0.105365	[0.079-0.132] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
747	chr22	21305845	21305846	rs117003805	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q11.21	CRKL	rs117003805-G	0.00511899999999999	6E-9		0.09196012	[0.061-0.123] unit decrease	Affymetrix [93095623] (imputed)	N
747	chr22	21321789	21321790	rs73164810	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	22q11.21	NR	rs73164810-?	NR	7E-7	(EA)	0.4181	[0.26-0.58] unit increase	Illumina [up to 11892802] (imputed)	N
747	chr22	21323356	21323357	rs756878	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	22q11.21	AIFM3	rs756878-T	NR	4E-9		0.159	[0.11-0.21] unit increase	Affymetrix [7701190] (imputed)	N
747	chr22	21332440	21332441	rs739525	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	22q11.21	AIFM3	rs739525-T	0.53	2E-8		1.14	[1.09-1.19]	Illumina [at least 371504] (imputed)	N
747	chr22	21338542	21338543	rs178282	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	22q11.21	NR	rs178282-?	NR	4E-8	(Selenomonadales)	0.166904	[0.11-0.23] unit decrease	Illumina [5293637] (imputed)	N
747	chr22	21338542	21338543	rs178282	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	22q11.21	NR	rs178282-?	NR	4E-8	(Negativicutes)	0.166904	[0.11-0.23] unit decrease	Illumina [5293637] (imputed)	N
747	chr22	21342168	21342169	rs178289	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Ruminococcus torques group id.14377)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	22q11.21		rs178289-C	NR	1E-6		4.891709	z score increase	Affymetrix, Illumina [NR] (imputed)	N
748	chr22	21382481	21382482	rs2075277	25017104	Kottyan LC	2014-07-13	Nat Genet	Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.	Eosinophilic esophagitis	657 European ancestry cases, 9,296 European ancestry controls	NA	22q11.21	NR	rs2075277-?	0.09	9E-7		1.544	[NR]	Illumina [1468075]	N
748	chr22	21431053	21431054	rs400946	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q11.21	NR	rs400946-?	NR	3E-6				Affymetrix [5486770] (imputed)	N
748	chr22	21450019	21450020	rs9306459	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.21	NR	rs9306459-?	NR	4E-9				Affymetrix [NR]	N
751	chr22	21811990	21811991	rs5997982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q11.21		rs5997982-T	0.060229	2E-16		0.04186674	[0.032-0.052] unit increase	Affymetrix [93095623] (imputed)	N
751	chr22	21811990	21811991	rs5997982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q11.21		rs5997982-T	0.0602470000000001	6E-11		0.033170506	[0.023-0.043] unit increase	Affymetrix [93095623] (imputed)	N
751	chr22	21811990	21811991	rs5997982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q11.21		rs5997982-T	0.0602430000000001	3E-9		0.030094896	[0.02-0.04] unit increase	Affymetrix [93095623] (imputed)	N
752	chr22	21910279	21910280	rs8139142	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA			rs8139142-T	0.78	2E-9		0.11	unit decrease	Illumina [2093892] (imputed)	N
752	chr22	21910279	21910280	rs8139142	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA			rs8139142-T	0.78	4E-8		0.11	unit decrease	Illumina [2398641] (imputed)	N
752	chr22	21911219	21911220	rs5754075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q11.21		rs5754075-A	NR	2E-11		0.0185	[0.013-0.024] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
752	chr22	21912245	21912246	rs390387	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	22q11.21		rs390387-A	0.187296	2E-9		0.0285537	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
752	chr22	21912245	21912246	rs390387	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q11.21	UBE2L3	rs390387-G	0.814224	5E-32		0.034233596	[0.029-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21912245	21912246	rs390387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs390387-G	0.79235	7E-37				Affymetrix, Illumina [22063850] (imputed)	N
752	chr22	21912245	21912246	rs390387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q11.21	NR	rs390387-G	0.80216	3E-38		0.033537	[0.028-0.039] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
752	chr22	21912271	21912272	rs390408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	22q11.21	NR	rs390408-A	0.18016	2E-18		0.0141635	[0.011-0.017] unit increase	Affymetrix [16585854] (imputed)	N
752	chr22	21912271	21912272	rs390408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	22q11.21	NR	rs390408-A	0.18016	3E-16		0.0149003	[0.011-0.019] unit increase	Affymetrix [16585866] (imputed)	N
752	chr22	21916165	21916166	rs5754100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	22q11.21		rs5754100-T	0.811709	2E-9		0.0278053	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
752	chr22	21916165	21916166	rs5754100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	22q11.21		rs5754100-T	0.811709	1E-9		0.0284352	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
752	chr22	21916165	21916166	rs5754100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	22q11.21		rs5754100-T	0.811709	3E-8		0.0258959	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
752	chr22	21916165	21916166	rs5754100	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	22q11.21		rs5754100-C	NR	9E-9		0.086	[0.057-0.115] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
752	chr22	21916165	21916166	rs5754100	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q11.21	UBE2L3	rs5754100-C	0.186958	1E-12		0.0194606	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
752	chr22	21916165	21916166	rs5754100	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	22q11.21		rs5754100-?	NR	1E-9				NR [~ 8900000] (imputed)	N
752	chr22	21916165	21916166	rs5754100	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q11.21	UBE2L3	rs5754100-C	0.194	2E-23		0.04611012	[0.037-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total phospholipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	4E-12		0.0356795	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	5E-8		0.0289147	[0.019-0.039] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	6E-17		0.0425006	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total cholines levels	115,006 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816762	2E-13		0.0372527	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816762	1E-8		0.0299164	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphoglycerides levels	115,006 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816762	2E-13		0.0375583	[0.028-0.048] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phosphatidylcholine levels	115,006 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816762	1E-13		0.0373631	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816762	6E-10		0.0326814	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	3E-12		0.0368558	[0.026-0.047] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	2E-10		0.0343908	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	22q11.21		rs5754102-C	0.816738	2E-10		0.0345837	[0.024-0.045] unit increase	NR [11722792] (imputed)	N
752	chr22	21916271	21916272	rs5754102	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q11.21	NR	rs5754102-C	0.817884	2E-8		0.0141391	[0.0092-0.0191] unit increase	Affymetrix [15000001]	N
752	chr22	21916271	21916272	rs5754102	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q11.21	UBE2L3	rs5754102-A	0.1892	1E-12		0.027	[0.02-0.034] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
752	chr22	21916271	21916272	rs5754102	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q11.21	UBE2L3	rs5754102-C	0.8168	3E-9		0.0998	[0.064-0.136] unit increase	Affymetrix [~ 11900000] (imputed)	N
752	chr22	21916360	21916361	rs5754104	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	22q11.21		rs5754104-A	NR	1E-10		1.09	[1.06-1.12]	NR [13810676] (imputed)	N
752	chr22	21916360	21916361	rs5754104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q11.21	UBE2L3	rs5754104-A	0.187487	8E-21		0.026611736	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
752	chr22	21917189	21917190	rs131654	19838193	Han JW	2009-10-18	Nat Genet	Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,152 Han Chinese ancestry cases, 7,050 Han Chinese ancestry controls	22q11.21	UBE2L3, HIC2	rs131654-A	0.48	1E-16		1.28	[1.20-1.35]	Illumina [493955]	N
752	chr22	21917449	21917450	rs131656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q11.21		rs131656-?	NR	2E-29				NR [~ 8900000] (imputed)	N
752	chr22	21917449	21917450	rs131656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	22q11.21	UBE2L3	rs131656-A	0.1912	6E-16		0.03695907	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21917449	21917450	rs131656	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	22q11.21	UBE2L3	rs131656-A	0.1912	2E-14		0.034824	[0.026-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21917478	21917479	rs5998509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	22q11.21		rs5998509-C	0.810444	1E-16		0.0390761	[0.03-0.048] unit increase	NR [11722792] (imputed)	N
752	chr22	21917478	21917479	rs5998509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	22q11.21		rs5998509-C	0.810444	1E-16		0.0394279	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
752	chr22	21917478	21917479	rs5998509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	22q11.21		rs5998509-C	0.810452	4E-9		0.0306344	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
752	chr22	21917478	21917479	rs5998509	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in HDL	115,082 European ancestry individuals	NA	22q11.21		rs5998509-C	0.810444	8E-14		0.0348674	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
752	chr22	21917478	21917479	rs5998509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5998509-T	0.210968	5E-62				Affymetrix, Illumina [23472807] (imputed)	N
752	chr22	21917478	21917479	rs5998509	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q11.21	NR	rs5998509-T	0.188334	2E-61		0.040865	[0.036-0.046] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
752	chr22	21917478	21917479	rs5998509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	22q11.21	UBE2L3	rs5998509-T	0.1887	5E-10		0.02838968	[0.019-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21917478	21917479	rs5998509	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	22q11.21	UBE2L3	rs5998509-T	0.1887	3E-14		0.0345522	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21917549	21917550	rs131657	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q11.21	UBE2L3	rs131657-A	0.190661	5E-77		0.0510024	[0.046-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21917625	21917626	rs131658	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	22q11.21	UBE2L3	rs131658-?	NR	1E-16		1.25	[1.19-1.32]	Illumina [at least 5000000] (imputed)	N
752	chr22	21917756	21917757	rs131660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q11.21	UBE2L3	rs131660-A	0.19193	3E-16		0.022838801	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21917858	21917859	rs138665726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q11.21	UBE2L3	rs138665726-C	0.1871	9E-11		0.02944599	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21917858	21917859	rs138665726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q11.21	UBE2L3	rs138665726-C	0.1871	1E-37		0.05817883	[0.049-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21921642	21921643	rs2194827	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (lymphocyte)	21,347 Hispanic or Latin American individuals	NA	22q11.21		rs2194827-T	0.9929	2E-8		0.3835	[0.25-0.52] unit increase	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21921685	21921686	rs140490	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	22q11.21		rs140490-G	0.809	1E-14				Affymetrix [10369434] (imputed)	N
752	chr22	21922455	21922456	rs11089620	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	22q11.21		rs11089620-C	0.810506	3E-9		0.0278227	[0.019-0.037] unit decrease	NR [11722792] (imputed)	N
752	chr22	21922455	21922456	rs11089620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q11.21		rs11089620-G	NR	5E-18		0.0203	[0.016-0.025] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
752	chr22	21922455	21922456	rs11089620	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q11.21	UBE2L3	rs11089620-C	0.811412	2E-37		0.0321551	[0.027-0.037] unit increase	Affymetrix [NR] (imputed)	N
752	chr22	21922903	21922904	rs2266959	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	22q11.21	YDJC, SDF2L1, UBE2L3, CCDC116	rs2266959-?	NR	9E-6				Illumina [9578670] (imputed)	N
752	chr22	21922903	21922904	rs2266959	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	22q11.21	YDJC, SDF2L1, UBE2L3, CCDC116	rs2266959-?		4E-15				Illumina [9725440] (imputed)	N
752	chr22	21922903	21922904	rs2266959	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	22q11.21	YDJC, SDF2L1, UBE2L3, CCDC116	rs2266959-?		1E-15				Illumina [9560910] (imputed)	N
752	chr22	21922903	21922904	rs2266959	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	22q11.21	UBE2L3	rs2266959-A	0.19	6E-9	(dominant model)	1.24	[1.15-1.33]	Illumina [123003]	N
752	chr22	21922903	21922904	rs2266959	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q11.21	YDJC, UBE2L3, RIMBP3, CCDC116, MAPK1	rs2266959-T	0.186	1E-16		1.105	[1.066-1.145]	Affymetrix, Illumina [1230000] (imputed)	N
752	chr22	21925016	21925017	rs2256609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q11.21	UBE2L3	rs2256609-A	0.810763	2E-41		0.0328809	[0.028-0.038] unit increase	Affymetrix [NR] (imputed)	N
752	chr22	21925016	21925017	rs2256609	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q11.21	NR	rs2256609-G	0.1971	6E-12	(EA)	1.1082332	[1.08-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
752	chr22	21926455	21926456	rs140496	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	22q11.21	UBE2L3	rs140496-?	NR	7E-9		0.02663	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
752	chr22	21928596	21928597	rs2266961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs2266961-C	0.810307	3E-18		0.0427485	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
752	chr22	21928596	21928597	rs2266961	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q11.21	UBE2L3	rs2266961-G	0.188303	3E-26		0.03015459	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21928596	21928597	rs2266961	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	22q11.21	UBE2L3	rs2266961-?	NR	4E-15	(subset analysis)			Illumina [130052]	N
752	chr22	21928596	21928597	rs2266961	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q11.21	NR	rs2266961-?	NR	3E-13	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
752	chr22	21928640	21928641	rs181359	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q11.21		rs181359-A	0.2019	9E-11		0.12791552	[0.089-0.167] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
752	chr22	21928640	21928641	rs181359	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.21	NR	rs181359-?	NR	7E-6				Affymetrix [NR]	N
752	chr22	21928640	21928641	rs181359	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	22q11.21	YDJC	rs181359-A	NR	2E-7		1.158	NR	Illumina [up to 11532644] (imputed)	N
752	chr22	21928640	21928641	rs181359	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	22q11.21	YDJC	rs181359-T	0.203	5E-16		1.1	[1.06-1.15]	Affymetrix, Illumina [953241] (imputed)	N
752	chr22	21928915	21928916	rs181360	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	22q11.21	UBE2L3	rs181360-T	0.801	1E-22	(Trans-ethnic initial)	0.0376	[0.029-0.046] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
752	chr22	21929565	21929566	rs181361	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q11.21		rs181361-T	NR	3E-8		0.0154	[0.0099-0.0209] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
752	chr22	21929565	21929566	rs181361	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q11.21	UBE2L3	rs181361-T	0.156299	5E-11		0.021209117	[0.015-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21929920	21929928	rs533923826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.21	UBE2L3	rs533923826-C	0.225733	6E-9		0.015523789	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21930776	21930777	rs5754166	30805717	Zhu Z	2019-02-25	Hum Genet	Shared genetic architecture between metabolic traits and Alzheimer's disease: a large-scale genome-wide cross-trait analysis.	Alzheimer's disease or HDL levels (pleiotropy)	54,162 European ancestry cases, 60,812 European ancestry individuals	NA	22q11.21	CCDC116, SDF2L1, UBE2L3, YDJC	rs5754166-?		4E-12				NR [NR]	N
752	chr22	21932067	21932068	rs181362	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	22q11.21		rs181362-T	0.3189	6E-9		0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
752	chr22	21932067	21932068	rs181362	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q11.21	UBE2L3	rs181362-C	0.8071	3E-9		0.0968	[0.062-0.132] unit increase	Affymetrix [~ 11900000] (imputed)	N
752	chr22	21932067	21932068	rs181362	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q11.21	NR	rs181362-C	NR	3E-12		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
752	chr22	21932067	21932068	rs181362	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q11.21	NR	rs181362-C	0.792	5E-9	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
752	chr22	21932067	21932068	rs181362	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q11.21	UBE2L3	rs181362-T	0.23	4E-18		0.038	[NR] unit decrease	NR [NR] (imputed)	N
752	chr22	21932067	21932068	rs181362	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	HDL cholesterol	99,900 European ancestry individuals	NA	22q11.21	UBE2L3	rs181362-T	0.2	1E-8		0.46	[0.28-0.64] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
752	chr22	21932653	21932654	rs34977459	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q11.21	UBE2L3	rs34977459-G	0.206581	1E-12		0.019791197	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
752	chr22	21932653	21932654	rs34977459	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q11.21	UBE2L3	rs34977459-G	0.2066	8E-17		0.03717346	[0.028-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21933427	21933428	rs5754177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q11.21		rs5754177-T	NR	3E-35		0.0316	[0.027-0.037] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
752	chr22	21935344	21935344	rs576111528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs576111528-A	0.828426	3E-11		0.0338129	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
752	chr22	21935344	21935344	rs576111528	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	22q11.21		rs576111528-A	0.828426	3E-8		0.0281773	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
752	chr22	21936151	21936152	rs66534072	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q11.21	NR	rs66534072-G	0.1938	8E-13				NR [9056863] (imputed)	N
752	chr22	21936151	21936152	rs66534072	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	22q11.21	UBE2L3	rs66534072-G		1E-9		1.155583		Illumina [252970]	N
752	chr22	21936151	21936152	rs66534072	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	22q11.21	YDJC	rs66534072-G	NA	2E-8				Illumina [252970]	N
752	chr22	21938467	21938468	rs374588807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q11.21		rs374588807-A	NR	7E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
752	chr22	21938467	21938468	rs374588807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q11.21	NR	rs374588807-A	NR	5E-10		0.0193	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr22	21938467	21938468	rs374588807	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	22q11.21	UBE2L3	rs374588807-A	0.2517	2E-11		0.02885185	[0.02-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21939674	21939675	rs5754217	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q11.21	NR	rs5754217-?	NR	2E-10				NR [2500000] (imputed)	N
752	chr22	21939674	21939675	rs5754217	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	22q11.21	UBE2L3	rs5754217-T	0.56	5E-6		1.1236		Illumina [2100739] (imputed)	N
752	chr22	21939674	21939675	rs5754217	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q11.21	YDJC, UBE2L3	rs5754217-G	0.83	9E-10	(EA, MCV)	0.194	[0.13-0.25] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
752	chr22	21939674	21939675	rs5754217	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	22q11.21	UBE2L3	rs5754217-T	0.19	2E-6	(anti-dsDNA +)	1.38	[1.21-1.57]	Illumina [421318] (imputed)	N
752	chr22	21939674	21939675	rs5754217	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	22q11.21	UBE2L3	rs5754217-T	0.19	2E-6		1.2	[1.13-1.27]	Illumina [~ 2100000] (imputed)	N
752	chr22	21940188	21940189	rs4820091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	22q11.21		rs4820091-G	NR	4E-13		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
752	chr22	21940188	21940189	rs4820091	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q11.21	NR	rs4820091-G	0.181087	2E-21		0.0106693	[0.0085-0.0128] unit increase	Affymetrix [16582909] (imputed)	N
752	chr22	21940188	21940189	rs4820091	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q11.21	NR	rs4820091-G	0.181087	3E-18		0.0105337	[0.0081-0.0129] unit increase	Affymetrix [16582965] (imputed)	N
752	chr22	21940188	21940189	rs4820091	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q11.21	UBE2L3	rs4820091-T	NR	2E-7	(Asian)	0.0031	[0.0019-0.0043] unit increase	NR [2500000] (imputed)	N
752	chr22	21941980	21941981	rs5998599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q11.21	NR	rs5998599-G	0.192501	4E-123		0.05422	[0.05-0.059] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
752	chr22	21941980	21941981	rs5998599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5998599-G	0.245953	4E-63				Affymetrix, Illumina [20825802] (imputed)	N
752	chr22	21941980	21941981	rs5998599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q11.21	NR	rs5998599-G	0.192012	4E-56		0.038344	[0.034-0.043] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
752	chr22	21945095	21945096	rs5749502	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	22q11.21	NR	rs5749502-A	0.2056	1E-11				Affymetrix, Illumina [at least 2500000] (imputed)	N
752	chr22	21945850	21945851	rs5998619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5998619-A	0.242502	9E-148				Affymetrix, Illumina [24246363] (imputed)	N
752	chr22	21945977	21945978	rs73166630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.21	UBE2L3	rs73166630-A	0.188005	2E-52		0.043107096	[0.038-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21945977	21945978	rs73166630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q11.21	NR	rs73166630-A	0.188015	8E-18		0.022976	[0.018-0.028] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
752	chr22	21947466	21947467	rs2266963	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	22q11.21	UBE2L3	rs2266963-C	0.81	2E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
752	chr22	21952253	21952255	rs530685161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q11.21	UBE2L3	rs530685161-A	0.201991	7E-33		0.033928096	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21952253	21952255	rs530685161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q11.21	UBE2L3	rs530685161-A	0.202001	7E-29		0.031671025	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21952253	21952255	rs530685161	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	22q11.21	UBE2L3	rs530685161-A	0.2029	1E-15		0.03652537	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21952253	21952255	rs530685161	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	22q11.21	UBE2L3	rs530685161-A	0.2029	6E-13		0.03286029	[0.024-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
752	chr22	21956652	21956653	rs2283790	27193031	Marquez A	2016-05-18	Ann Rheum Dis	A combined large-scale meta-analysis identifies COG6 as a novel shared risk locus for rheumatoid arthritis and systemic lupus erythematosus.	Systemic lupus erythematosus or rheumatoid arthritis	2,237 European ancestry systemic lupus erythematosus cases, 3,911 European ancestry rheumatoid arthritis cases, 10,398 European ancestry controls	1,957 European ancestry systemic lupus erythematosus cases, 13,641 European ancestry rheumatoid arthritis cases, 36,509 European ancestry controls	22q11.21	UBE2L3	rs2283790-?		2E-11	(same effect)	1.22	[NR]	NR [at least 309839] (imputed)	N
752	chr22	21956652	21956653	rs2283790	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	22q11.21	UBE2L3	rs2283790-G	0.196	8E-8		1.12		Illumina [128935]	N
752	chr22	21956652	21956653	rs2283790	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	22q11.21	UBE2L3	rs2283790-G	0.196	1E-6	(EA)	1.12		Illumina [128935]	N
752	chr22	21963785	21963786	rs5754344	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	Systemic lupus erythematosus	1,639 East Asian ancestry cases, 2,410 East Asian ancestry controls	NA			rs5754344-G	NR	5E-11		0.2466	[0.17-0.32] unit increase	Illumina [NR] (imputed)	N
752	chr22	21963785	21963786	rs5754344	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA		NR	rs5754344-A	0.622	2E-45		0.805	[0.78-0.83]	Illumina [11270530] (imputed)	N
752	chr22	21963785	21963786	rs5754344	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA		UBE2L3	rs5754344-A	0.78	2E-10		0.045	[0.031-0.059] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
752	chr22	21964760	21964761	rs4821112	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q11.21	UBE2L3	rs4821112-?		1E-20		0.0419	[0.033-0.051] unit increase	Illumina [31500000] (imputed)	N
752	chr22	21964760	21964761	rs4821112	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	22q11.21	UBE2L3, HIC2	rs4821112-A	0.47	1E-8		0.067	[0.043-0.091] unit decrease	Illumina [561583]	N
752	chr22	21966441	21966442	rs5998672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q11.21		rs5998672-A	NR	3E-16		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
752	chr22	21969639	21969640	rs8137950	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q11.21	UBE2L3	rs8137950-?	NR	7E-23		0.04441	[0.036-0.053] unit decrease novel	Illumina [6108953] (imputed)	N
752	chr22	21971631	21971632	rs8139079	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	22q11.21		rs8139079-G	0.468448	1E-10		0.0231994	[0.016-0.03] unit increase	Illumina [13477028] (imputed)	N
752	chr22	21973318	21973319	rs4821116	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	22q11.21	UBE2L3	rs4821116-T	0.39	4E-8	(Asian initial, BMI unadjusted)	0.044	[0.028-0.06] unit decrease	Affymetrix, Illumina [~ 1900000] (imputed)	N
752	chr22	21973318	21973319	rs4821116	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	25,169 East Asian ancestry individuals	45,953 East Asian ancestry individuals	22q11.21	UBE2L3	rs4821116-T	0.39	3E-6	(BMI unadjusted)	0.044	[0.026-0.062] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
752	chr22	21973318	21973319	rs4821116	24162738	Hu Z	2013-10-27	Nat Genet	New loci associated with chronic hepatitis B virus infection in Han Chinese.	Hepatitis B	951 Han Chinese ancestry HBV carrier cases, 937 Han Chinese ancestry HBV cleared controls	4,230 Chinese ancestry HBV carrier cases, 3,051 Chinese ancestry HBV cleared controls, 2,622 Chinese ancestry controls	22q11.21	UBE2L3	rs4821116-G	0.59	2E-12		1.2195	[1.15-1.3]	Illumina [490610]	N
752	chr22	21974702	21974703	rs5754387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5754387-C	0.262818	5E-22				Affymetrix, Illumina [21126107] (imputed)	N
752	chr22	21974702	21974703	rs5754387	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	22q11.21	NR	rs5754387-G	0.479131	5E-10		0.027103	[0.019-0.036] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
752	chr22	21974702	21974703	rs5754387	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q11.21	UBE2L3	rs5754387-G	0.806049	4E-12		0.0162822	[0.012-0.021] unit increase	NR [13737936] (imputed)	N
752	chr22	21974702	21974703	rs5754387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q11.21		rs5754387-?	NR	6E-9				NR [~ 8900000] (imputed)	N
752	chr22	21976933	21976934	rs7444	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q11.21		rs7444-C	NR	5E-9		0.24	[0.16-0.32] unit decrease	Illumina [97506867]	N
752	chr22	21976933	21976934	rs7444	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q11.21	intergenic	rs7444-T	0.7049	1E-28		0.034	[0.028-0.04] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
752	chr22	21976933	21976934	rs7444	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	22q11.21	UBE2L3	rs7444-?	NR	1E-20		1.2	[1.15-1.24]	Illumina [at least 5000000] (imputed)	N
752	chr22	21976933	21976934	rs7444	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	22q11.21	UBE2L3	rs7444-?	0.519	2E-6	(Chinese)	1.23	[NR]	NR [6344733] (imputed)	N
752	chr22	21976933	21976934	rs7444	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	22q11.21	UBE2L3	rs7444-?	0.204	1E-13	(EA)	1.28	[NR]	NR [6344733] (imputed)	N
752	chr22	21976933	21976934	rs7444	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	22q11.21	UBE2L3, YDJC	rs7444-C		2E-22		1.27	[1.21-1.33]	Illumina [644674]	N
752	chr22	21977046	21977047	rs7445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q11.21		rs7445-T	NR	2E-88		0.046	[0.041-0.051] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
752	chr22	21977046	21977047	rs7445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q11.21		rs7445-T	0.466689	1E-32		0.042876	[0.036-0.05] unit decrease	Illumina [13476266] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q11.21	UBE2L3	rs7445-T	NR	5E-11	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q11.21	UBE2L3	rs7445-T	NR	1E-24				Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q11.21	UBE2L3	rs7445-T	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q11.21	UBE2L3	rs7445-T	NR	4E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q11.21	UBE2L3	rs7445-T	NR	4E-13	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q11.21	UBE2L3	rs7445-T	NR	1E-29				Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q11.21	UBE2L3	rs7445-T	NR	4E-7	(EA)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q11.21	UBE2L3	rs7445-T	NR	3E-16		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q11.21	UBE2L3	rs7445-T	NR	2E-9	(Asian)	0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	22q11.21	UBE2L3	rs7445-T	NR	4E-10	(Asian)	0.007918	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	22q11.21	UBE2L3	rs7445-T	NR	1E-13		0.007452	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
752	chr22	21977046	21977047	rs7445	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	22q11.21	UBE2L3	rs7445-?	NR	1E-14		0.04087	[0.03-0.051] unit decrease novel	Illumina [6108953] (imputed)	N
752	chr22	21979095	21979096	rs11089637	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	22q11.21	UBE2L3, YDJC	rs11089637-T	NR	4E-6		0.0506095	[-0.02104-0.12226] unit decrease	Illumina [8380626] (imputed)	N
752	chr22	21979095	21979096	rs11089637	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	22q11.21	UBE2L3, YDJC	rs11089637-T	0.84	6E-7	(EA)	0.1048	[0.064-0.146] unit decrease	Illumina [8380626] (imputed)	N
752	chr22	21979095	21979096	rs11089637	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	22q11.21	UBE2L3	rs11089637-G	0.17	1E-9		1.13	[1.08-1.17]	Illumina [133816] (imputed)	N
752	chr22	21979095	21979096	rs11089637	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q11.21	YDJC, UBE2L3	rs11089637-C	0.26	2E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
752	chr22	21979095	21979096	rs11089637	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q11.21	YDJC, UBE2L3	rs11089637-C	0.16	2E-7	(EA)	1.1	[1.06-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
752	chr22	21979288	21979289	rs4821124	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q11.21		rs4821124-C	0.18	3E-18		8.73	z score increase	Affymetrix [9061022] (imputed)	N
752	chr22	21979288	21979289	rs4821124	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q11.21	YDJC, UBE2L3	rs4821124-C	0.188514	2E-33		0.034026932	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21979288	21979289	rs4821124	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	22q11.21	UBE2L3	rs4821124-?	NR	2E-11		1.12		Illumina [109572]	N
752	chr22	21979288	21979289	rs4821124	23143594	Tsoi LC	2012-12-01	Nat Genet	Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.	Psoriasis	10,588 European ancestry cases, 22,806 European ancestry controls	NA	22q11.21	UBE2L3	rs4821124-C	0.189	4E-8		1.13		Illumina [111236] (imputed)	N
752	chr22	21979288	21979289	rs4821124	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	22q11.21	UBE2L3, YDJC	rs4821124-?	0.186	6E-11		1.16		Illumina [139553]	N
752	chr22	21979583	21979584	rs12158299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	22q11.21		rs12158299-T	0.469811	1E-18		0.0415865	[0.032-0.051] unit decrease	Illumina [13465896] (imputed)	N
752	chr22	21979583	21979584	rs12158299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	22q11.21		rs12158299-T	NR	1E-42		0.0337	[0.029-0.039] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
752	chr22	21980256	21980257	rs5754422	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q11.21		rs5754422-G	0.19	6E-13		7.2	z score increase	Affymetrix [9061022] (imputed)	N
752	chr22	21980256	21980257	rs5754422	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	22q11.21		rs5754422-A	0.809	4E-11				Affymetrix [10369434] (imputed)	N
752	chr22	21980256	21980257	rs5754422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q11.21	YDJC, UBE2L3	rs5754422-G	0.191714	7E-44		0.038553674	[0.033-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21980256	21980257	rs5754422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q11.21	YDJC, UBE2L3	rs5754422-G	0.191685	6E-29		0.03164564	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21980256	21980257	rs5754422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q11.21	YDJC, UBE2L3	rs5754422-G	0.1917	3E-26		0.030037835	[0.024-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21980256	21980257	rs5754422	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.21	NR	rs5754422-G	0.250727	7E-20				Affymetrix, Illumina [24558453] (imputed)	N
752	chr22	21980393	21980393	rs758643372	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q11.21	NR	rs758643372-D	0.192855	2E-11		0.017383	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
752	chr22	21982053	21982054	rs1811069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q11.21		rs1811069-?	NR	6E-47				NR [~ 8900000] (imputed)	N
752	chr22	21982053	21982054	rs1811069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q11.21		rs1811069-?	NR	9E-10				NR [~ 8900000] (imputed)	N
752	chr22	21982053	21982054	rs1811069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	22q11.21		rs1811069-?	NR	5E-9				NR [~ 8900000] (imputed)	N
752	chr22	21982053	21982054	rs1811069	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q11.21	NR	rs1811069-T	NR	1E-13		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
752	chr22	21982053	21982054	rs1811069	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q11.21	NR	rs1811069-T	0.801	4E-9	(EA)	0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
752	chr22	21982248	21982249	rs878825	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q11.21		rs878825-T	0.808	2E-14				Affymetrix [10369434] (imputed)	N
752	chr22	21982248	21982249	rs878825	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.21	CCDC116	rs878825-C	0.192271	2E-9		0.016779387	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
752	chr22	21982248	21982249	rs878825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.21		rs878825-?	NR	8E-10				NR [~ 8900000] (imputed)	N
752	chr22	21982248	21982249	rs878825	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q11.21	UBE2L3	rs878825-C	NR	1E-9		0.0292727	[0.019-0.039] unit increase	Affymetrix [16832071] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	2E-12		0.0375139	[0.027-0.048] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	6E-18		0.0428341	[0.033-0.053] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	1E-13		0.0393582	[0.029-0.05] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	2E-14		0.0367169	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	4E-17		0.0408748	[0.031-0.05] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	1E-17		0.0420939	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	1E-17		0.0429981	[0.033-0.053] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	8E-10		0.032927	[0.022-0.043] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	5E-16		0.0400335	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	3E-14		0.0364974	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	4E-11		0.035339	[0.025-0.046] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	2E-16		0.0404607	[0.031-0.05] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein A1 levels	115,082 European ancestry individuals	NA	22q11.21		rs2298428-C	0.817448	2E-17		0.041478	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
752	chr22	21982891	21982892	rs2298428	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.21	NR	rs2298428-T	NR	9E-19		0.0274	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr22	21982891	21982892	rs2298428	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	22q11.21	NR	rs2298428-T	NR	5E-12		0.0225	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
752	chr22	21982891	21982892	rs2298428	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q11.21	NR	rs2298428-T	NR	2E-10		0.0206	[0.014-0.027] unit increase	Affymetrix [9000000] (imputed)	N
752	chr22	21982891	21982892	rs2298428	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	22q11.21	NR	rs2298428-T	NR	5E-29		0.0362	[0.03-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr22	21982891	21982892	rs2298428	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	22q11.21	NR	rs2298428-T	NR	6E-28		0.0356	[0.029-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
752	chr22	21982891	21982892	rs2298428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q11.21	NR	rs2298428-T	0.181119	2E-20		0.022627	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
752	chr22	21982891	21982892	rs2298428	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.21		rs2298428-?	NR	6E-12		0.0178885	[0.013-0.023] unit increase	Affymetrix [20259828] (imputed)	N
752	chr22	21982891	21982892	rs2298428	21383967	Zhernakova A	2011-02-24	PLoS Genet	Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.	Celiac disease or Rheumatoid arthritis	4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls	2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls	22q11.21	UBE2L3	rs2298428-T	NR	3E-10				Illumina [472854]	N
752	chr22	21982891	21982892	rs2298428	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	22q11.21	YDJC, UBE2L3	rs2298428-A	0.20	2E-7		1.13	[1.08-1.19]	Illumina [292387]	N
752	chr22	21983259	21983260	rs2298429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q11.21		rs2298429-G	NR	6E-10		0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
752	chr22	21983259	21983260	rs2298429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q11.21		rs2298429-G	NR	4E-46		0.0333	[0.029-0.038] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
752	chr22	21984204	21984205	rs710177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	22q11.21		rs710177-G	0.481225	3E-8		0.017645	[0.011-0.024] unit increase	Illumina [13479135] (imputed)	N
752	chr22	21984204	21984205	rs710177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	22q11.21		rs710177-G	0.480544	4E-14		0.0280926	[0.021-0.035] unit decrease	Illumina [13476299] (imputed)	N
752	chr22	21984204	21984205	rs710177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	22q11.21	NR	rs710177-A	0.507419	3E-29		0.047864	[0.04-0.056] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
752	chr22	21984204	21984205	rs710177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	22q11.21	NR	rs710177-A	0.507413	2E-12		0.030338	[0.022-0.039] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
752	chr22	21984378	21984379	rs3747093	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q11.21	YDJC	rs3747093-?	NR	3E-10		0.0281	[0.019-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
752	chr22	21984378	21984379	rs3747093	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	22q11.21	UBE2L3	rs3747093-A		3E-13		1.26	[NR]	Illumina [> 644674] (imputed)	N
752	chr22	21985093	21985094	rs5754467	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	22q11.21	YDJC	rs5754467-G	NR	1E-13		1.2	[1.13-1.27]	Illumina [6450125] (imputed)	N
752	chr22	21985093	21985094	rs5754467	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		22q11.21	YDJC	rs5754467-G	0.2	5E-7		1.21	[1.12-1.30]	Illumina [90536]	N
752	chr22	21997069	21997070	rs13054355	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	22q11.21	SDF2L1	rs13054355-G	0.854	6E-12				NR [509413]	N
752	chr22	21999320	21999321	rs188428790	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	22q11.21	NR	rs188428790-C	NR	7E-6		0.2229	[0.13-0.32] SD units increase	NR [10700000] (imputed)	N
752	chr22	22014921	22014922	rs433704	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q11.21		rs433704-?	NR	4E-11				NR [~ 8900000] (imputed)	N
752	chr22	22016390	22016391	rs428595	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	22q11.21	PPIL2	rs428595-A	0.011	2E-6		3.424		Illumina [131847]	N
752	chr22	22016390	22016391	rs428595	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	22q11.21	PPIL2	rs428595-A	0.011	1E-6	(any IA)	2.47		Illumina [131847]	N
753	chr22	22047968	22047969	rs79384503	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q11.21	NR	rs79384503-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
753	chr22	22063336	22063337	rs5749696	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q11.22	NR	rs5749696-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
753	chr22	22098686	22098687	rs9610216	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	22q11.22	NR	rs9610216-?	NR	1E-6		1.54	NR	Illumina [456414]	N
753	chr22	22101994	22101995	rs5754941	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	22q11.22	PPIL2, YPEL1, MAPK1, PPM1F, TOP3B	rs5754941-C	0.437	6E-7		1.05792	[1.04-1.08]	NR [9372253] (imputed)	N
753	chr22	22118856	22118857	rs59312009	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior parietal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q11.22	MAPK1	rs59312009-?		8E-6				Illumina [4322238] (imputed)	N
753	chr22	22131124	22131125	rs2283792	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	22q11.22	MAPK1	rs2283792-C	0.53	6E-16		1.1		Illumina [161311]	N
753	chr22	22131124	22131125	rs2283792	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	22q11.22	MAPK1	rs2283792-C	NR	5E-9		1.1	[1.08-1.11]	Illumina [465434]	N
754	chr22	22151938	22151939	rs78907487	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	22q11.22	MAPK1	rs78907487-A	0.852214	4E-10		0.0123725	[0.0085-0.0162] unit decrease	Affymetrix [12370749]	N
754	chr22	22190162	22190163	rs17759796	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals		NR	rs17759796-A	NR	7E-10		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
754	chr22	22202163	22202164	rs9607320	32928877	Jung SY	2020-09-14	Cancer Prev Res (Phila)	Genome-wide association analysis of pro-inflammatory cytokines and gene-lifestyle interaction for invasive breast cancer risk: the WHI dbGaP Study.	Serum interleukin-6 concentration in active individuals	4,221 European ancestry women	NA	22q11.22	MAPK1	rs9607320-?		1E-8		0.73	NR	Affymetrix, Illumina [21784812] (imputed)	N
754	chr22	22205352	22205353	rs9610458	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q11.22	MAPK1	rs9610458-T	NR	1E-19		1.0893	NR	Affymetrix, Illumina [8278136] (imputed)	N
754	chr22	22221166	22221167	rs9610500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q11.22		rs9610500-G	NR	1E-9		0.008	[0.0055-0.0105] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
754	chr22	22227447	22227448	rs9607347	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.22	NR	rs9607347-C	0.500865	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
754	chr22	22246781	22246782	rs2845466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.22	NR	rs2845466-C	0.473103	4E-10				Affymetrix, Illumina [24653286] (imputed)	N
754	chr22	22254044	22254045	rs240619	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	22q11.22	PPM1F	rs240619-C	0.5527	3E-8		0.010819235	[0.007-0.0146] unit increase	Illumina [9339358] (imputed)	N
754	chr22	22256523	22256524	rs171277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q11.22		rs171277-?	NR	2E-11				NR [~ 8900000] (imputed)	N
754	chr22	22264102	22264103	rs240051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q11.22		rs240051-C	0.483507	7E-9		0.012830024	[0.0085-0.0172] unit decrease	Affymetrix [93095623] (imputed)	N
754	chr22	22264102	22264103	rs240051	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q11.22	NR	rs240051-C	0.485978	6E-14		0.014107	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
754	chr22	22268758	22268759	rs5756052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q11.22	NR	rs5756052-G	0.484215	4E-11		0.012324	[0.0087-0.016] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
754	chr22	22268758	22268759	rs5756052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	22q11.22		rs5756052-?	NR	3E-10				NR [~ 8900000] (imputed)	N
755	chr22	22307518	22307519	rs412050	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	22q11.22	PPM1F	rs412050-?	NR	6E-6				Affymetrix [504219]	N
755	chr22	22315546	22315547	rs74573604	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	22q11.22	NR	rs74573604-G	NR	4E-6		0.2338	[0.14-0.33] SD units increase	NR [10700000] (imputed)	N
755	chr22	22322137	22322138	rs9610750	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	22q11.22		rs9610750-A	0.11	8E-8		0.11	unit decrease	Illumina [2093892] (imputed)	N
755	chr22	22322137	22322138	rs9610750	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	22q11.22		rs9610750-A	0.11	3E-9		0.13	unit decrease	Illumina [2398641] (imputed)	N
755	chr22	22358940	22358941	rs182382461	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q11.22	AK131325	rs182382461-G	0.999	1E-6	(AA)	0.509	unit increase	Illumina [NR] (imputed)	N
755	chr22	22381767	22381768	rs410285	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	22q11.22	NR	rs410285-G	0.011	1E-6		6.45	[3.04-13.67]	Illumina [7261187] (imputed)	N
755	chr22	22394748	22394749	rs1372070	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	22q11.22	NR	rs1372070-?	NR	5E-13		7.228	NR z score decrease	Illumina [at least 830937] (imputed)	N
755	chr22	22402292	22402293	rs114465512	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to selective serotonin reuptake inhibitors in depression	6,348 European ancestry responder cases, 3,340 European ancestry non-responder cases	NA	22q11.22	TOP3B, VPREB1	rs114465512-?		5E-7		12.987013	[3.98-43.48]	Illumina [~ 12000000] (imputed)	N
756	chr22	22436318	22436319	rs16982689	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	22q11.22	TOP3B	rs16982689-T	0.022	6E-6	(HRTSE)	2.67	[1.51-3.83] unit increase	Illumina [799713]	N
756	chr22	22453512	22453513	rs9611014	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q11.22	NR	rs9611014-C	0.783537	3E-12		0.0231561	[0.016-0.03] unit increase	Affymetrix [16580851] (imputed)	N
756	chr22	22506568	22506569	rs11089937	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	22q11.22	VPREB1	rs11089937-A	0.58	8E-6	(Age 20-60 years)	1.33	[1.17-1.51]	Affymetrix, Illumina [up to 17585496] (imputed)	N
756	chr22	22512414	22512415	rs987710	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	22q11.22	intergenic	rs987710-G	NR	5E-7	(Body iron)	2.01	[NR] unit increase	Illumina [331060]	N
756	chr22	22512414	22512415	rs987710	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	22q11.22	intergenic	rs987710-G	NR	1E-6	(Serum ferritin concentration)	0.44	[NR] unit increase	Illumina [331060]	N
756	chr22	22512414	22512415	rs987710	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron deficiency	336 European ancestry cases, 343 European ancestry controls	71 European ancestry cases, 161 European ancestry controls	22q11.22	intergenic	rs987710-?	NR	1E-6	(Case-control)	1.67	[NR]	Illumina [331060]	N
757	chr22	22562873	22562874	rs7287401	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs7287401-C	0.1949	1E-82		0.444856	[0.4-0.49] unit increase	Illumina [7506463] (imputed)	N
757	chr22	22565514	22565515	rs61146270	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs61146270-G	0.09954	1E-170		0.824858	[0.77-0.88] unit increase	Illumina [7506463] (imputed)	N
757	chr22	22568013	22568014	rs738875	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	IGLV10-54	rs738875-T	0.63	1E-312	(SCP2 sterol-binding domain-containing protein 1, SCP2D1.14175.78.3)	0.82	[0.78-0.86] unit increase	Affymetrix [10572788] (imputed)	N
757	chr22	22568628	22568629	rs7286621	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	22q11.22	NR	rs7286621-A	0.9927	1E-20		1.7808	[1.41-2.16] unit decrease	Illumina [~ 10600000] (imputed)	N
757	chr22	22568759	22568760	rs56368162	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs56368162-A	0.08787	9E-10		0.204687	[0.14-0.27] unit increase	Illumina [7506463] (imputed)	N
757	chr22	22577740	22577741	rs199930025	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	NR	rs199930025-T	0.119	2E-171	(SCP2 sterol-binding domain-containing protein 1, SCP2D1.14175.78.3)	0.99	[0.91-1.07] unit increase	Affymetrix [10572788] (imputed)	N
757	chr22	22578407	22578408	rs9623095	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	NR	rs9623095-T	0.398	5E-151	(SCP2 sterol-binding domain-containing protein 1, SCP2D1.14175.78.3)	0.7	[0.64-0.76] unit increase	Affymetrix [10572788] (imputed)	N
757	chr22	22579340	22579341	rs5757508	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs5757508-T	0.3708	8E-18		0.169227	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
757	chr22	22581368	22581369	rs6001482	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Diastolic blood pressure	2146 East Asian ancestry individuals	NA	22q11.22	TOP3B, VPREB1	rs6001482-?	NR	2E-6				Affymetrix [394222]	N
757	chr22	22615606	22615606	rs139005642	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	22q11.22	NR	rs139005642-AAAAG		2E-6		0.1315	[0.077-0.186] SD units decrease	NR [10700000] (imputed)	N
758	chr22	22712466	22712467	rs5757973	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	IGLV1-47	rs5757973-G	0.89	2E-21	(Programmed cell death protein 1, PDCD1.9227.15.3)	0.38	[0.3-0.46] unit increase	Affymetrix [10572788] (imputed)	N
758	chr22	22728325	22728326	rs397816	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	22q11.22	NR	rs397816-C		8E-7		0.1237	[0.075-0.173] SD units decrease	NR [10700000] (imputed)	N
758	chr22	22753484	22753485	rs11913426	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	22q11.22	NR	rs11913426-A	0.977	8E-10		0.2963	[0.2-0.39] unit decrease	Illumina [~ 10600000] (imputed)	N
758	chr22	22780595	22780596	rs4822015	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q11.22	ZNF280A	rs4822015-?	NR	9E-6	(TAG 48:3)	0.29345822	[0.16-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
760	chr22	23052966	23052967	rs5751536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	22q11.22		rs5751536-A	NR	3E-8		0.2096	[0.14-0.28] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
760	chr22	23054613	23054614	rs9623882	32581322	Kakuta Y	2020-06-24	Sci Rep	An Integrated Genomic and Transcriptomic Analysis Reveals Candidates of Susceptibility Genes for Crohn's Disease in Japanese Populations.	Crohn's disease	713 Japanese ancestry cases, 2,063 Japanese ancestry controls	NA	22q11.22	GGTLC2	rs9623882-?	NR	2E-6		1.14	[1.08-1.20]	NR [7424691] (imputed)	N
762	chr22	23249439	23249440	rs2856876	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs2856876-A	0.1288	2E-20		0.261082	[0.21-0.32] unit increase	Illumina [7506463] (imputed)	N
762	chr22	23249439	23249440	rs2856876	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOXJ2	5,359 Icelandic ancestry individuals	NA	22q11.22		rs2856876-A	0.1288	1E-28		0.306276	[0.25-0.36] unit increase	Illumina [7506463] (imputed)	N
762	chr22	23250471	23250472	rs9608050	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	NR	rs9608050-A	0.053	3E-15	(SCP2 sterol-binding domain-containing protein 1, SCP2D1.14175.78.3)	0.46	[0.34-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr22	23251601	23251602	rs6003387	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	IGLC4	rs6003387-G	0.056	6E-33	(Forkhead box protein J2, FOXJ2.14204.55.3)	0.67	[0.55-0.79] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr22	23255524	23255525	rs2854096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRRG1	5,364 Icelandic ancestry individuals	NA	22q11.22		rs2854096-C	0.05401	7E-19		0.36641	[0.29-0.45] unit decrease	Illumina [7506463] (imputed)	N
762	chr22	23255524	23255525	rs2854096	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FOXJ2	5,359 Icelandic ancestry individuals	NA	22q11.22		rs2854096-C	0.05401	4E-23		0.403648	[0.32-0.48] unit decrease	Illumina [7506463] (imputed)	N
762	chr22	23259858	23259859	rs6003389	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.22	IGLC7	rs6003389-A	0.06	5E-12	(Transmembrane gamma-carboxyglutamic acid protein 1, PRRG1.9008.6.3)	0.37	[0.27-0.47] unit decrease	Affymetrix [10572788] (imputed)	N
762	chr22	23276218	23276219	rs4822350	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCP2D1	5,368 Icelandic ancestry individuals	NA	22q11.22		rs4822350-T	0.06701	7E-26		0.392532	[0.32-0.47] unit decrease	Illumina [7506463] (imputed)	N
762	chr22	23299159	23299160	rs144212837	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	22q11.22		rs144212837-T	NR	2E-6	(GLM)	23.0292	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
763	chr22	23356099	23356100	rs6003456	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	22q11.22		rs6003456-T	0.765336	1E-8		0.013	[0.0091-0.0169] unit decrease	NR [7250403] (imputed)	N
763	chr22	23372100	23372101	rs150863502	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (negative Marder score)	1,390 European ancestry cases	NA	22q11.22		rs150863502-G	NR	5E-6	(GLM)	5.6704	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
763	chr22	23372863	23372864	rs4443100	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	22q11.22	RTDR1, RSPH14	rs4443100-G	0.32	4E-11		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
763	chr22	23407260	23407261	rs13056137	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Total body bone mineral density (MTAG)	66,628 individuals	NA	22q11.22	NR	rs13056137-C	0.74	3E-8		0.02	[0.012-0.028] unit increase	Affymetrix, Illumina [7369691] (imputed)	N
763	chr22	23407260	23407261	rs13056137	32390946	Liu L	2020-04-22	Front Endocrinol (Lausanne)	Twelve New Genomic Loci Associated With Bone Mineral Density.	Heel bone mineral density (MTAG)	426,824 individuals	NA	22q11.22	NR	rs13056137-C	0.74	7E-8		0.01	[0.0041-0.0159] unit increase	NR [7369691] (imputed)	N
763	chr22	23410286	23410287	rs193244257	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	22q11.22		rs193244257-G	0.01903	1E-6		2.678	[1.793-3.998]	Affymetrix [7975321] (imputed)	N
763	chr22	23410917	23410918	rs13054904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	22q11.22		rs13054904-A	NR	1E-12		0.1427	[0.1-0.18] unit increase	Affymetrix, Illumina [25845211] (imputed)	N
763	chr22	23410917	23410918	rs13054904	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 5,587 Japanese ancestry cases, 388,508 British ancestry controls, 28,870 Japanese ancestry controls	NA	22q11.22	BCR	rs13054904-A	0.26	4E-12		1.14	[1.10-1.19]	Affymetrix, Illumina [~ 5000000] (imputed)	N
763	chr22	23410917	23410918	rs13054904	31729369	Howles SA	2019-11-15	Nat Commun	Genetic variants of calcium and vitamin D metabolism in kidney stone disease.	Kidney stones	6,536 British ancestry cases, 388,508 British ancestry controls	NA	22q11.22	BCR	rs13054904-A	0.26	3E-12		1.15	[1.11-1.20]	Affymetrix [~ 8400000] (imputed)	N
763	chr22	23412016	23412017	rs3788337	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	22q11.22	RTDR1, GNAZ	rs3788337-?	NR	5E-8		0.0139802	[0.009-0.019] unit decrease	Affymetrix [25921788] (imputed)	N
763	chr22	23412057	23412058	rs3788338	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	22q11.22	NR	rs3788338-G	0.746028	3E-7		1.081081	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
763	chr22	23412189	23412190	rs45608532	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (left-handed vs. right-handed)	38,322 European ancestry left-handed individuals, 356,567 European ancestry right-handed individuals	NA	22q11.22	RTDR1, GNAZ	rs45608532-A	0.075	1E-8		1.09	[1.06-1.12]	NR [~ 11000000] (imputed)	N
763	chr22	23412189	23412190	rs45608532	31504236	Wiberg A	2019-09-05	Brain	Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics.	Handedness (Left-handed vs. non-left-handed)	38,322 European ancestry left-handed individuals, 362,866 European ancestry right-handed individuals	NA	22q11.22	RTDR1, GNAZ	rs45608532-?	NR	5E-8				NR [~ 11000000] (imputed)	N
763	chr22	23460684	23460684	rs5844547	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.23		rs5844547-?	NR	5E-9		0.0133019	[0.0087-0.0179] unit increase	Affymetrix [20259828] (imputed)	N
764	chr22	23474084	23474085	rs13055979	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	22q11.23	NR	rs13055979-G	0.72	2E-8		0.03	[0.02-0.04] unit increase	NR [9704453]	N
764	chr22	23474084	23474085	rs13055979	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	22q11.23	NR	rs13055979-G	0.72	1E-6		0.02	[0.012-0.028] unit increase	NR [9704453]	N
764	chr22	23477969	23477970	rs4820539	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	22q11.23	RTDR1	rs4820539-A	0.42	2E-7		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
764	chr22	23494925	23494926	rs16998069	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	22q11.23	RAB36, RTDR1	rs16998069-C	0.01	9E-7		0.3062	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
764	chr22	23505898	23505899	rs77721014	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	22q11.23	EPHA3	rs77721014-?		3E-8				NR [7428630] (imputed)	N
764	chr22	23512280	23512281	rs3055915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.23		rs3055915-T	0.297715	6E-9		0.014278619	[0.0095-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
764	chr22	23522803	23522804	rs112064774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q11.23	NR	rs112064774-C	0.259479	3E-10		0.014108	[0.0097-0.0185] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
764	chr22	23534271	23534272	rs117252219	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	22q11.23	NR	rs117252219-C	0.01904	2E-6		0.5173	[0.3-0.73] unit increase	Illumina [10677593] (imputed)	N
765	chr22	23593050	23593051	rs5751614	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	22q11.23	BCR, GNAZ, RTDR1, IGLL1	rs5751614-A	0.49	6E-6		4.3	[2.34-6.26] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
765	chr22	23614624	23614625	rs140503	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q11.23	NR	rs140503-G	0.187	2E-8				NR [9056863] (imputed)	N
765	chr22	23628738	23628739	rs77049423	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	22q11.23	BCR	rs77049423-A		2E-6		0.134	[0.087-0.189] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
765	chr22	23631822	23631823	rs62219796	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	22q11.23	NR	rs62219796-T	NR	1E-5		0.09	[0.051-0.129] unit increase	Illumina [6319684] (imputed)	N
765	chr22	23644793	23644794	rs9608102	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	22q11.23	LINC02556	rs9608102-C	0.911718	4E-8				Affymetrix, Illumina [NR] (imputed)	N
765	chr22	23644793	23644794	rs9608102	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	22q11.23	BCR	rs9608102-?		8E-6	(EA)			Illumina [NR]	N
765	chr22	23663847	23663848	rs4822384	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	22q11.23	BCR	rs4822384-T	0.3911	2E-8		0.97814006	[NR]	Illumina [12493444] (imputed)	N
765	chr22	23675802	23675803	rs9620247	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	22q11.23	BCR	rs9620247-?		4E-7	(AA)	0.39	[0.24-0.54] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
765	chr22	23704812	23704813	rs2186359	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x thiazide/thiazide-like diuretics interaction in hypertension	3,516 European ancestry individuals	NA	22q11.23		rs2186359-T	0.718	8E-7				Affymetrix, Illumina [6400000] (imputed)	N
766	chr22	23765264	23765265	rs4822410	22424883	Imboden M	2012-03-15	J Allergy Clin Immunol	Genome-wide association study of lung function decline in adults with and without asthma.	Pulmonary function decline	1,441 European ancestry asthma cases, 2,677 European ancestry controls	1,160 European ancestry asthma cases, 10,858 European ancestry controls	22q11.23	intergenic	rs4822410-?	NR	3E-6	(FEV1/FVC decline in asthmatics)	0.5411	[0.32-0.77] unit decrease	Illumina [~ 2500000] (imputed)	N
766	chr22	23791217	23791218	rs188349311	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	22q11.23	intergenic	rs188349311-?	NR	4E-6		0.893	[0.38-1.41] unit increase	Illumina [at least 13000000] (imputed)	N
766	chr22	23807580	23807581	rs12168060	30353303	Seo M	2018-10-23	J Mol Med (Berl)	Genomics and response to long-term oxygen therapy in chronic obstructive pulmonary disease.	Response to long-term oxygen therapy in chronic obstructive pulmonary disease	290 European ancestry individuals	NA	22q11.23	NR	rs12168060-?	NR	7E-6				Illumina [5946283] (imputed)	N
766	chr22	23807719	23807720	rs62238841	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM230I	rs62238841-?	NR	2E-8	(female)	0.937216	[NR] unit decrease	Affymetrix [NR] (imputed)	N
767	chr22	23878056	23878057	rs73155085	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in diabetes	361 Korean ancestry cases, 4,951 Korean ancestry controls	NA	22q11.23		rs73155085-A	0.1649	4E-6		1.542	[1.283-1.85199999999999]	Affymetrix [7975321] (imputed)	N
767	chr22	23890835	23890836	rs131408	25009551	Kullo IJ	2014-06-25	Front Genet	The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study.	Peripheral artery disease	1,641 European ancestry cases, 1,604 European ancestry controls	740 European ancestry cases, 1,501 European ancestry controls	22q11.23	LOC388882, IGLL1	rs131408-C	NR	6E-6		1.211	[1.11-1.32]	Illumina [537872]	N
767	chr22	23891106	23891107	rs131409	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	22q11.23	LOC388882, IGLL1	rs131409-?	0.27	3E-7		19.82	unit increase	Illumina [120975] (imputed)	N
767	chr22	23915609	23915610	rs111903752	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGLL1	5,368 Icelandic ancestry individuals	NA	22q11.23		rs111903752-T	0.02829	2E-27		0.623159	[0.51-0.74] unit decrease	Illumina [7506463] (imputed)	N
767	chr22	23915619	23915620	rs139571703	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.23	IGLL1	rs139571703-T	0.037	1E-25	(Immunoglobulin lambda-like polypeptide 1, IGLL1.6485.59.3)	0.73	[0.59-0.87] unit decrease	Affymetrix [10572788] (imputed)	N
767	chr22	23917948	23917949	rs2096522	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.23	NR	rs2096522-C	0.033	3E-17	(Immunoglobulin lambda-like polypeptide 1, IGLL1.6485.59.3)	0.61	[0.47-0.75] unit decrease	Affymetrix [10572788] (imputed)	N
767	chr22	23922551	23922552	rs9624216	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IGLL1	5,368 Icelandic ancestry individuals	NA	22q11.23		rs9624216-A	0.0884	7E-65		0.55916	[0.49-0.62] unit decrease	Illumina [7506463] (imputed)	N
767	chr22	23922551	23922552	rs9624216	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q11.23	NR	rs9624216-A	0.1	5E-25	(Immunoglobulin lambda-like polypeptide 1, IGLL1.6485.59.3)	0.48	[0.38-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
767	chr22	23922982	23922983	rs140174	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.23	IGLL1	rs140174-G	0.254375	4E-25	(IGLL1, 6485_59_3)	0.2958802	[0.24-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
767	chr22	23922982	23922983	rs140174	21448238	Ligthart L	2011-03-30	Eur J Hum Genet	Meta-analysis of genome-wide association for migraine in six population-based European cohorts.	Migraine	2,116 European ancestry cases, 7,318 European ancestry controls, 330 Dutch founder cases, 1,216 Dutch founder controls	2,957 European ancestry cases, 5,774 European ancestry controls	22q11.23	IGLL1	rs140174-G	0.26	8E-6		1.08	[NR]	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
768	chr22	24050470	24050471	rs17629956	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.23	NR	rs17629956-?	NR	5E-12				Affymetrix [NR]	N
768	chr22	24087184	24087185	rs145952310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q11.23		rs145952310-C	NR	4E-10		0.0375	[0.026-0.049] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
768	chr22	24087184	24087185	rs145952310	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	22q11.23		rs145952310-C	0.029673	4E-10		0.037538	[0.026-0.049] unit decrease	Illumina [13479295] (imputed)	N
768	chr22	24087184	24087185	rs145952310	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	22q11.23	ZNF70	rs145952310-?	NR	8E-9		0.049107987	[0.032-0.066] unit decrease	Illumina [27896057] (imputed)	N
768	chr22	24109284	24109285	rs73396548	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs73396548-A	0.1662	7E-10	(IgG2 BG2n total/G2n)	0.3291	[0.22-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
768	chr22	24109284	24109285	rs73396548	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs73396548-A	0.1659	1E-9	(IgG2_G2FN/IgG2_G2F)	0.3269	[0.22-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
768	chr22	24109408	24109409	rs73396549	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q11.23	NR	rs73396549-T	NR	3E-11		0.024	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
768	chr22	24109549	24109550	rs131444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.23	CHCHD10	rs131444-C	0.907319	4E-10		0.024168562	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
768	chr22	24109773	24109774	rs179468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q11.23		rs179468-?	NR	1E-8				NR [~ 8900000] (imputed)	N
768	chr22	24115514	24115515	rs5760006	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q11.23		rs5760006-T	NR	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
769	chr22	24135042	24135043	rs9624326	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624326-T	0.1728	7E-8	(IgG1_G1FNn)	0.2666	[0.17-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24135042	24135043	rs9624326	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624326-T	0.1728	3E-8	(IgG1_G1FN)	0.2756	[0.18-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24135042	24135043	rs9624326	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624326-T	0.1728	2E-6	(IgG1 FBG2n/G2n)	0.2378	[0.14-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24136541	24136542	rs17630758	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	22q11.23	SMARCB1, DELR3, CHCHD10, VPREB3	rs17630758-A	0.152	1E-41		0.308	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
769	chr22	24139273	24139274	rs9624327	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624327-T	0.1925	9E-13	(IgG2 BG0n total/G0n)	0.3491	[0.25-0.44] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24139273	24139274	rs9624327	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624327-T	0.1925	5E-13	(IgG2 FBG0n/G0n)	0.3534	[0.26-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24139273	24139274	rs9624327	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624327-T	0.1925	1E-9	(IgG2 FBG2n/G2n)	0.3005	[0.2-0.4] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24139273	24139274	rs9624327	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624327-T	0.1922	9E-13	(IgG2_G0FN/IgG2_G0F)	0.3495	[0.25-0.45] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1976	2E-9	(IgG1 Bisecting_GlcNAc)	0.2795	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	7E-10	(IgG1 FBG0n/G0n)	0.2905	[0.2-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	5E-8	(IgG1_G1FN/IgG1_G1F)	0.253	[0.16-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	3E-8	(IgG1 FBG1n/G1n)	0.259	[0.17-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	3E-8	(IgG1 BG1n total/G1n)	0.2576	[0.17-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	2E-9	(IgG1 FBn/Fn)	0.28	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	2E-9	(IgG1 FBn/Fn total)	0.2791	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	2E-9	(IgG1 FBn)	0.2819	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	2E-9	(IgG1 Bn total)	0.2817	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	1E-9	(IgG1_G0FN/IgG1_G0F)	0.2827	[0.19-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	1E-9	(IgG1 BG0n total/G0n)	0.2855	[0.19-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24141689	24141690	rs12167679	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs12167679-G	0.1974	1E-8	(IgG1 Fn/Bn total)	0.2661	[0.17-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24149549	24149550	rs34556611	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs34556611-T	0.1727	3E-8	(IgG2_G1FN)	0.2816	[0.18-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24152670	24152671	rs12172023	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	22q11.23	DERL3	rs12172023-T	0.1214	4E-15		0.8107	[0.61-1.01] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
769	chr22	24155110	24155111	rs7284877	33677556	Garnier S	2021-03-03	Eur Heart J	Genome-wide association analysis in dilated cardiomyopathy reveals two new players in systolic heart failure on chromosomes 3p25.1 and 22q11.23.	Dilated cardiomyopathy	2,651 European ancestry cases, 4,329 European ancestry controls	584 European ancestry cases, 963 European ancestry controls	22q11.23	SMARCB1	rs7284877-C	0.81	5E-10		1.33	[1.22-1.46]	Illumina [9152885] (imputed)	N
769	chr22	24159306	24159307	rs2070458	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	22q11.23	SMARCB1	rs2070458-T	0.8085	1E-12		0.0067	[0.0049-0.0085] unit decrease	Affymetrix [~ 9500000] (imputed)	N
769	chr22	24159306	24159307	rs2070458	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global radial strain	19,260 European ancestry individuals	NA	22q11.23	SMARCB1	rs2070458-T	0.8085	8E-9		0.5716	[0.38-0.77] unit decrease	Affymetrix [~ 9500000] (imputed)	N
769	chr22	24159306	24159307	rs2070458	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular global circumferential strain	19,260 European ancestry individuals	NA	22q11.23	SMARCB1	rs2070458-T	0.8085	6E-9		0.2285	[0.15-0.31] unit increase	Affymetrix [~ 9500000] (imputed)	N
769	chr22	24159306	24159307	rs2070458	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular end-systolic volume	19,260 European ancestry individuals	NA	22q11.23	SMARCB1	rs2070458-T	0.8085	3E-6		0.7893	[0.46-1.12] unit increase	Affymetrix [~ 9500000] (imputed)	N
769	chr22	24159306	24159307	rs2070458	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	22q11.23	SMARCB1	rs2070458-T	0.8085	4E-10		0.0391	[0.027-0.051] unit decrease	Affymetrix [~ 9500000] (imputed)	N
769	chr22	24161716	24161717	rs5760054	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Fractional shortening	19,580 Japanese ancestry individuals	NA	22q11.23	SMARCB1	rs5760054-?	NR	1E-11		0.07037	[0.05-0.091] unit decrease	Illumina [6108953] (imputed)	N
769	chr22	24166255	24166256	rs9624334	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	22q11.23	SMARCB1	rs9624334-G	0.853	5E-12	(plasma glycan peak 63)	0.277	[0.2-0.35] unit increase	Illumina [8557543] (imputed)	N
769	chr22	24166255	24166256	rs9624334	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs9624334-C	0.1601	8E-12	(IgG2_G0FNn)	0.3414	[0.24-0.44] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	6E-13	(IgG2 FBn/Fn)	0.3709	[0.27-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	6E-13	(IgG2 FBn/Fn total)	0.3709	[0.27-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	6E-13	(IgG2 Bn total)	0.371	[0.27-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	3E-13	(IgG2 FBn)	0.3754	[0.27-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	2E-10	(IgG2 FBG1n/G1n)	0.3292	[0.23-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	2E-10	(IgG2 BG1n total/G1n)	0.3293	[0.23-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1608	1E-12	(IgG2 Fn/Bn total)	0.3653	[0.26-0.47] unit increase	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1606	3E-10	(IgG2_G1FN/IgG2_G1F)	0.327	[0.23-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q11.23	NR	rs2186369-G	0.1599	3E-13	(IgG2 Bisecting_GlcNAc)	0.3778	[0.28-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	1E-6				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	1E-12				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	3E-10				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	3E-11				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG disialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	1E-7				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	4E-10				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	4E-11				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.13	3E-11				Illumina [NR]	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.190211496872207	2E-8	(IGP74)	0.2357	[0.15-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189826451627285	4E-9	(IGP75)	0.2454	[0.16-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189823636647347	2E-8	(IGP69)	0.2336	[0.15-0.32] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189663332739421	4E-9	(IGP63)	0.2445	[0.16-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189660889532294	7E-16	(IGP49)	0.3363	[0.25-0.42] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189660889532294	3E-13	(IGP9)	0.304	[0.22-0.39] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189640669950739	5E-10	(IGP50)	0.2588	[0.18-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189580990204809	8E-15	(IGP68)	0.324	[0.24-0.41] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189579642030276	1E-12	(IGP62)	0.2948	[0.21-0.38] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189518247657296	1E-10	(IGP39)	0.267	[0.19-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	9E-17	(IGP71)	0.347	[0.27-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	4E-6	(IGP45)	0.1924	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	3E-8	(IGP14)	0.2294	[0.15-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	2E-8	(IGP76)	0.2333	[0.15-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	2E-7	(IGP54)	0.2177	[0.14-0.3] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	2E-14	(IGP64)	0.3184	[0.24-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	1E-16	(IGP70)	0.3451	[0.26-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	1E-12	(IGP67)	0.2938	[0.21-0.38] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189496820649755	1E-10	(IGP40)	0.2653	[0.18-0.35] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189377544642857	9E-10	(IGP10)	0.2557	[0.17-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-G	0.189358691006233	9E-17	(IGP72)	0.3471	[0.27-0.43] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q11.23	NR	rs2186369-G	0.189496820649755	9E-17	(IGP66)	0.3473	[0.27-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
769	chr22	24170995	24170996	rs2186369	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186369-T	0.81823	2E-7	(IgG1G1N)	0.0667	[0.042-0.092] unit increase	Illumina [~ 2500000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	22q11.23	SMARCB1	rs2186370-A	0.2187	2E-15		1.2061096	1.09-1.34	Illumina [6530233] (imputed)	N
769	chr22	24171304	24171305	rs2186370	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	22q11.23	SMARCB1	rs2186370-A	0.2187	5E-17		1.2935665	1.22-1.37	Illumina [6530233] (imputed)	N
769	chr22	24171304	24171305	rs2186370	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	22q11.23	SMARCB1	rs2186370-G	0.8086	4E-11		1.1168042	1.08-1.15	Affymetrix, Illumina [up to 7736182] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	9E-15	(0 ms)	0.0510732	[0.038-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	7E-15	(-2 ms)	0.0512344	[0.038-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	7E-11	(8 ms)	0.0426614	[0.029-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	5E-15	(-4 ms)	0.0509509	[0.037-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	3E-14	(4 ms)	0.0505214	[0.037-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	3E-13	(6 ms)	0.0481222	[0.035-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	1E-14	(2 ms)	0.0512388	[0.038-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24171304	24171305	rs2186370	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q11.23	SMARCB1, DERL3	rs2186370-A	0.215048	1E-14	(-6 ms)	0.0500514	[0.037-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
769	chr22	24178278	24178279	rs5760061	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Left ventricular internal dimension in systole	19,586 Japanese ancestry individuals	NA	22q11.23	DERL3	rs5760061-?	NR	9E-11		0.06682	[0.047-0.087] unit increase	Illumina [6108953] (imputed)	N
769	chr22	24178278	24178279	rs5760061	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Ejection fraction	19,516 Japanese ancestry individuals	NA	22q11.23	DERL3	rs5760061-?	NR	7E-11		0.06724	[0.047-0.087] unit decrease	Illumina [6108953] (imputed)	N
769	chr22	24179921	24179922	rs3177243	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q11.23	NR	rs3177243-C	NR	1E-15		0.0279	[0.021-0.035] unit increase	Affymetrix [9000000] (imputed)	N
769	chr22	24181651	24181652	rs6003909	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	22q11.23	MMP11	rs6003909-A	0.189508	2E-19		0.405607	[0.32-0.49] unit increase	Affymetrix [8590397] (imputed)	N
769	chr22	24183874	24183875	rs2070464	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	22q11.23	DERL3	rs2070464-G	0.38	6E-16		0.54	[0.4-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
769	chr22	24203798	24203799	rs9620328	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs9620328-T	NR	5E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr22	24204437	24204438	rs138381486	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep duration (> 10 hours)	90,515 individuals	NA	22q11.23	SLC2A11	rs138381486-T	NR	5E-8		1.797	[1.59-2.01] unit increase	NR [11024754] (imputed)	N
769	chr22	24205554	24205555	rs73160439	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs73160439-A	NR	3E-11		0.0281	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
769	chr22	24222709	24222710	rs2236620	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs2236620-T	0.3397	3E-17	(GSTT1)	0.1439	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24222709	24222710	rs2236620	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs2236620-T	0.3397	1E-9	(DDT)	0.5788	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24223483	24223484	rs9608209	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs9608209-T	0.4791	4E-9	(GSTT1)	0.09877	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24233461	24233462	rs915591	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs915591-T	0.05052	4E-9	(GSTT2B)	0.05989	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24233718	24233724	rs67314034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	22q11.23		rs67314034-T	NR	5E-8		0.0107	[0.0068-0.0146] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
769	chr22	24233728	24233729	rs2877177	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs2877177-G	0.3293	2E-8	(DDT)	0.4938	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24233997	24233998	rs875643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs875643-A	0.4129	4E-12	(DDT)	0.6294	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24233997	24233998	rs875643	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs875643-A	0.4129	1E-11	(GSTT1)	0.1131	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24234171	24234172	rs738806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs738806-G	NR	1E-21		0.0263	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
769	chr22	24234171	24234172	rs738806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs738806-A	0.2561	7E-16	(DDT)	0.7752	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24234171	24234172	rs738806	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs738806-A	0.2561	5E-13	(MIF)	0.4084	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24236391	24236392	rs755622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs755622-C	0.2108	2E-8	(GSTT2B)	0.03056	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24236391	24236392	rs755622	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs755622-C	0.2108	2E-10	(MIF)	0.4193	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24237462	24237463	rs2070767	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs2070767-T	0.2334	6E-12	(MIF)	0.4138	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24237462	24237463	rs2070767	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs2070767-T	0.2334	2E-19	(DDT)	0.9062	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24240137	24240138	rs5760092	28292921	Boldry EJ	2017-03-14	Cancer Epidemiol Biomarkers Prev	Genetic Determinants of 1,3-Butadiene Metabolism and Detoxification in Three Populations of Smokers with Different Risks of Lung Cancer.	Urinary 1,3-butadiene metabolite levels in smokers	327 African American individuals, 349 Japanese American individuals, 396 European ancestry individuals	NA	22q11.23	GSTT1	rs5760092-?	NR	3E-9	(MHBMA, AA)			Illumina [11892802] (imputed)	N
769	chr22	24240339	24240340	rs5760093	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760093-G	0.3031	9E-18	(DDT)	0.7725	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24240339	24240340	rs5760093	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760093-G	0.3031	8E-15	(MIF)	0.4113	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24241100	24241101	rs1007888	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1007888-T	0.4913	2E-35	(DDT)	1.016	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24241100	24241101	rs1007888	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1007888-T	0.4913	1E-31	(MIF)	0.5644	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24241100	24241101	rs1007888	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1007888-T	0.4913	1E-29	(GSTT1)	0.1733	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24241548	24241549	rs57860828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs57860828-T	NR	1E-16		0.0395	[0.03-0.049] unit increase	Affymetrix [9000000] (imputed)	N
769	chr22	24247309	24247310	rs5760096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760096-A	0.284	2E-18	(MIF)	0.4898	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24247309	24247310	rs5760096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760096-A	0.284	2E-15	(GSTT1)	0.1428	NR unit decrease	Illumina [1671387] (imputed)	N
769	chr22	24247309	24247310	rs5760096	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760096-A	0.284	1E-26	(DDT)	0.9967	NR unit increase	Illumina [1671387] (imputed)	N
769	chr22	24247309	24247310	rs5760096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.23		rs5760096-?	NR	3E-11				NR [~ 8900000] (imputed)	N
770	chr22	24248780	24248781	rs5760103	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MIF plasma levels	400 French ancestry individuals	NA	22q11.23		rs5760103-G	NR	9E-7		0.209	[0.12-0.3] ng/mL increase	Illumina [5201092] (imputed)	N
770	chr22	24249738	24249739	rs5760105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q11.23		rs5760105-T	NR	5E-11		0.0161	[0.011-0.021] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
770	chr22	24250794	24250795	rs2330634	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	22q11.23	MIF	rs2330634-G	NR	5E-10		0.1556	[0.11-0.2] SD units decrease	NR [10700000] (imputed)	N
770	chr22	24255295	24255296	rs4822455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822455-C	0.4408	9E-9	(GSTT2B)	0.02498	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24255295	24255296	rs4822455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822455-C	0.4408	6E-63	(MIF)	0.7224	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24255295	24255296	rs4822455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822455-C	0.4408	3E-71	(DDT)	1.288	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24255295	24255296	rs4822455	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822455-C	0.4408	1E-21	(GSTT1)	0.1516	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24256893	24256894	rs5996631	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	22q11.23	NR	rs5996631-?	NR	8E-42		0.05658	[0.048-0.065] unit increase novel	Illumina [6108953] (imputed)	N
770	chr22	24261142	24261143	rs915590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q11.23		rs915590-G	NR	1E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
770	chr22	24261142	24261143	rs915590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs915590-A	0.1812	3E-11	(DDT)	0.7587	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24261142	24261143	rs915590	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs915590-A	0.1812	1E-12	(MIF)	0.4705	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24264088	24264089	rs6003958	26959369	Haiman CA	2016-03-09	PLoS One	Benzene Uptake and Glutathione S-transferase T1 Status as Determinants of S-Phenylmercapturic Acid in Cigarette Smokers in the Multiethnic Cohort.	S-phenylmercapturic acid levels in smokers	364 African American current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals, 437 European ancestry current smoker individuals, 453 Latino ancestry current smoker individuals, 674 Japanese American ancestry current smoker individuals	NA	22q11.23	GSTT2, SLC2A11, DERL3, LOC284889	rs6003958-G	NR	2E-46		0.453	[0.39-0.51] unit decrease	Illumina [11892802] (imputed)	N
770	chr22	24264395	24264397	rs1320793225	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1320793225-T	0.2213	7E-27	(DDT)	1.076	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24264395	24264397	rs1320793225	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1320793225-T	0.2213	6E-21	(GSTT1)	0.1769	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24264395	24264397	rs1320793225	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs1320793225-T	0.2213	2E-17	(MIF)	0.5146	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24266725	24266726	rs5751775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q11.23		rs5751775-C	NR	1E-16		0.0168	[0.013-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
770	chr22	24266725	24266726	rs5751775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q11.23		rs5751775-C	NR	1E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
770	chr22	24266725	24266726	rs5751775	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	22q11.23	MIF, GSTT2B	rs5751775-T	0.41	8E-17		8.34	z-score increase	Affymetrix [4311822] (imputed)	N
770	chr22	24266725	24266726	rs5751775	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q11.23	MIF, GSTT2B	rs5751775-T	0.41	2E-9		6.04	z-score increase	Affymetrix [4312306] (imputed)	N
770	chr22	24266866	24266867	rs5760120	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q11.23	MIF	rs5760120-A	0.5584375	8E-26	(MIF, 8221_19_3)	0.26364487	[0.21-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
770	chr22	24267046	24267047	rs5751777	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MIF	5,366 Icelandic ancestry individuals	NA	22q11.23		rs5751777-C	0.4321	1E-42		0.260442	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
770	chr22	24267046	24267047	rs5751777	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q11.23	MIF-AS1	rs5751777-C	0.413464	1E-22		0.00222094	[0.0018-0.0027] unit increase	Affymetrix [13995440] (imputed)	N
770	chr22	24268119	24268120	rs4822461	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822461-G	0.1777	7E-11	(DDT)	0.7708	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24268119	24268120	rs4822461	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs4822461-G	0.1777	5E-15	(MIF)	0.5291	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24268450	24268451	rs146664677	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	22q11.23		rs146664677-T	NR	3E-8		0.517	[0.33-0.7] unit decrease	Affymetrix [509886] (imputed)	N
770	chr22	24272121	24272122	rs5760124	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760124-T	0.4721	8E-46	(DDT)	1.143	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24272121	24272122	rs5760124	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760124-T	0.4721	6E-36	(MIF)	0.6068	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24272121	24272122	rs5760124	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs5760124-T	0.4721	4E-41	(GSTT1)	0.2019	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24284824	24284825	rs6003982	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, urinary frequency)	1,409 European ancestry individuals	NA	22q11.23	intergenic	rs6003982-?	0.56	4E-6		1.9607843	[1.47-2.63]	NR [~ 38000000] (imputed)	N
770	chr22	24292177	24292178	rs41412647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q11.23	NR	rs41412647-C	0.430186	5E-20		0.00767019	[0.006-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
770	chr22	24292177	24292178	rs41412647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q11.23	NR	rs41412647-C	0.430675	5E-20		0.00993543	[0.0076-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
770	chr22	24292177	24292178	rs41412647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q11.23	NR	rs41412647-C	0.430186	6E-18		0.00801548	[0.0061-0.0099] unit increase	Affymetrix [16582965] (imputed)	N
770	chr22	24292177	24292178	rs41412647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q11.23	NR	rs41412647-C	0.430675	1E-16		0.00985317	[0.0074-0.0123] unit increase	Affymetrix [16582614] (imputed)	N
770	chr22	24292487	24292488	rs1985951	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q11.23	NR	rs1985951-T	0.569289	1E-10		0.013076	[0.0091-0.017] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
770	chr22	24295073	24295074	rs575146	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	22q11.23	NR	rs575146-G	0.398125	1E-8		0.017733	[0.011-0.024] unit increase	Affymetrix [16577313] (imputed)	N
770	chr22	24295285	24295286	rs2739330	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	22q11.23	DDT, DDTL, GSTT1, GSTT2B, MIF	rs2739330-T	0.42	2E-9		3.7	[2.70-4.60] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
770	chr22	24313084	24313085	rs73162496	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs73162496-A	0.05226	2E-10	(GSTT2B)	0.06114	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24334709	24334710	rs140287	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	GSTT4	rs140287-G	0.440375	4E-99		0.0108644	[0.0098-0.0119] unit increase	Affymetrix [13995440] (imputed)	N
770	chr22	24334947	24334948	rs5760147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q11.23	AP000351.4	rs5760147-C	0.379035	5E-9		0.013394004	[0.0089-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr22	24335976	24335977	rs140288	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q11.23	GSTT2	rs140288-G	0.433291	4E-11		0.0133114	[0.0094-0.0173] unit increase	Affymetrix [NR] (imputed)	N
770	chr22	24336530	24336531	rs2844004	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	22q11.23		rs2844004-C	0.431854	2E-8		0.0230986	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
770	chr22	24338070	24338071	rs6004011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs6004011-G	0.2073	9E-14	(GSTT1)	0.156	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24338070	24338071	rs6004011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs6004011-G	0.2073	5E-11	(DDT)	0.756	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24338070	24338071	rs6004011	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs6004011-G	0.2073	2E-10	(MIF)	0.4291	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24340651	24340651	rs767922151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs767922151-G	0.4303	4E-30	(DDT)	0.908	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24340651	24340651	rs767922151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs767922151-G	0.4303	3E-48	(GSTT1)	0.1996	NR unit increase	Illumina [1671387] (imputed)	N
770	chr22	24340651	24340651	rs767922151	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs767922151-G	0.4303	3E-24	(MIF)	0.4806	NR unit decrease	Illumina [1671387] (imputed)	N
770	chr22	24366746	24366747	rs72617242	28292921	Boldry EJ	2017-03-14	Cancer Epidemiol Biomarkers Prev	Genetic Determinants of 1,3-Butadiene Metabolism and Detoxification in Three Populations of Smokers with Different Risks of Lung Cancer.	Urinary 1,3-butadiene metabolite levels in smokers	327 African American individuals, 349 Japanese American individuals, 396 European ancestry individuals	NA		GSTT1	rs72617242-?	NR	1E-14	(MHBMA, EA)			Illumina [11892802] (imputed)	N
770	chr22	24368962	24368963	rs6004031	28292921	Boldry EJ	2017-03-14	Cancer Epidemiol Biomarkers Prev	Genetic Determinants of 1,3-Butadiene Metabolism and Detoxification in Three Populations of Smokers with Different Risks of Lung Cancer.	Urinary 1,3-butadiene metabolite levels in smokers	327 African American individuals, 349 Japanese American individuals, 396 European ancestry individuals	NA		GSTT1	rs6004031-?	NR	5E-9	(MHBMA, Japanese)			Illumina [11892802] (imputed)	N
770	chr22	24368962	24368963	rs6004031	28292921	Boldry EJ	2017-03-14	Cancer Epidemiol Biomarkers Prev	Genetic Determinants of 1,3-Butadiene Metabolism and Detoxification in Three Populations of Smokers with Different Risks of Lung Cancer.	Urinary 1,3-butadiene metabolite levels in smokers	327 African American individuals, 349 Japanese American individuals, 396 European ancestry individuals	NA		GSTT1	rs6004031-?	NR	1E-23	(MHBMA)			Illumina [11892802] (imputed)	N
770	chr22	24368962	24368963	rs6004031	26959369	Haiman CA	2016-03-09	PLoS One	Benzene Uptake and Glutathione S-transferase T1 Status as Determinants of S-Phenylmercapturic Acid in Cigarette Smokers in the Multiethnic Cohort.	S-phenylmercapturic acid levels in smokers	364 African American current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals, 437 European ancestry current smoker individuals, 453 Latino ancestry current smoker individuals, 674 Japanese American ancestry current smoker individuals	NA		GSTTP1, LOC391322, LOC284889, GSTT2, DDTL, GSTT1, GSTTP2, CABIN1	rs6004031-T	NR	3E-134		0.6769	[0.63-0.73] unit decrease	Illumina [11892802] (imputed)	N
770	chr22	24370193	24370194	rs9608227	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	C-reactive protein levels	6,545 European ancestry individuals	NA			rs9608227-T	0.1	2E-7		1.35	[0.98-2.17] unit decrease	Illumina [19468843] (imputed)	N
771	chr22	24404577	24404578	rs405597	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs405597-A	NR	2E-10		0.0315	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr22	24462179	24462180	rs112234981	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs112234981-G	NR	4E-27		0.1075	[0.088-0.127] unit increase	Affymetrix [9000000] (imputed)	N
771	chr22	24468385	24468386	rs17854874	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs17854874-A	NR	3E-13		0.0336	[0.025-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
771	chr22	24469114	24469115	rs5996665	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q11.23	NR	rs5996665-A	0.093148	1E-12		0.022133	[0.016-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
771	chr22	24483116	24483117	rs78365374	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs78365374-A	NR	9E-24		0.0735	[0.059-0.088] unit increase	Affymetrix [9000000] (imputed)	N
771	chr22	24509985	24509986	rs111736007	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs111736007-T	NR	4E-10		0.0487	[0.033-0.064] unit increase	Affymetrix [9000000] (imputed)	N
772	chr22	24522143	24522144	rs73167538	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs73167538-C	NR	4E-39		0.0827	[0.07-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr22	24528057	24528058	rs735863	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs735863-T	NR	2E-25		0.0475	[0.038-0.057] unit increase	Affymetrix [9000000] (imputed)	N
772	chr22	24530991	24530992	rs9624405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.23	NR	rs9624405-T	0.147428	2E-11				Affymetrix, Illumina [24246363] (imputed)	N
772	chr22	24539367	24539368	rs117001360	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117001360-A	NR	1E-29		0.0842	[0.07-0.099] unit increase	Affymetrix [9000000] (imputed)	N
772	chr22	24548596	24548597	rs79318089	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CABIN1	rs79318089-?	NR	8E-10	(male)	2.27362	[NR] unit increase	Affymetrix [NR] (imputed)	N
772	chr22	24571851	24571852	rs75303441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs75303441-A	NR	4E-30		0.0695	[0.058-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr22	24571851	24571852	rs75303441	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	CABIN1	rs75303441-A	0.06	3E-37	(glycerophosphoserine)	0.406	[0.34-0.47] unit decrease	Illumina [7750367] (imputed)	N
772	chr22	24574053	24574054	rs144524781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs144524781-A	NR	4E-11		0.1193	[0.084-0.155] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr22	24574053	24574054	rs144524781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.23	CABIN1	rs144524781-A	0.00453199999999998	6E-10		0.10231507	[0.07-0.135] unit increase	Affymetrix [93095623] (imputed)	N
772	chr22	24578039	24578040	rs147224860	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	22q11.23	NR	rs147224860-C	NR	9E-16	(conditioned on rs2330634)	1.954	SD units increase	NR [10700000] (imputed)	N
772	chr22	24582040	24582041	rs8141797	31872054	Wei L	2019-11-08	Neurol Genet	Identification of TYW3/CRYZ and FGD4 as susceptibility genes for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	666 Han Chinese ancestry cases, 3,988 Han Chinese ancestry controls	up to 884 Han Chinese ancestry cases, up to 5,329 Han Chinese ancestry controls	22q11.23	NR	rs8141797-?	NR	1E-12		1.57	NR	Illumina [456414]	N
772	chr22	24582040	24582041	rs8141797	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	22q11.23	CABIN1, SUSD2	rs8141797-A	0.9309	1E-7		0.0655	[0.041-0.09] unit increase	NR [8041861] (imputed)	N
772	chr22	24582040	24582041	rs8141797	23624525	Deng M	2013-04-28	Nat Genet	Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	506 Han Chinese ancestry cases, 1,859 Han Chinese ancestry controls	706 Han Chinese ancestry cases, 1,777 Han Chinese ancestry controls	22q11.23	SUSD2, CABIN1, GGT5	rs8141797-G	0.1026	2E-9		1.52	[NR]	Illumina [473683]	N
772	chr22	24602475	24602476	rs5760255	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	22q11.23	GGT5	rs5760255-A	0.8426	6E-6		0.0369	[0.021-0.053] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
772	chr22	24602475	24602476	rs5760255	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	22q11.23	GGT5	rs5760255-A	0.8426	2E-6		0.0384	[0.023-0.054] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
772	chr22	24613951	24613952	rs9608249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q11.23	GGT5	rs9608249-A	0.148899	1E-11		0.0189428	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
772	chr22	24613951	24613952	rs9608249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q11.23	GGT5	rs9608249-A	0.148874	2E-9		0.018631993	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
772	chr22	24613951	24613952	rs9608249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q11.23		rs9608249-?	NR	7E-12				NR [~ 8900000] (imputed)	N
772	chr22	24617100	24617101	rs6004103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q11.23		rs6004103-T	NR	1E-12		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
772	chr22	24617100	24617101	rs6004103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q11.23		rs6004103-T	NR	2E-10		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
772	chr22	24621540	24621541	rs140980900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs140980900-A	0.01045	8E-11	(NUDT5)	0.2458	NR unit increase	Illumina [1671387] (imputed)	N
772	chr22	24621540	24621541	rs140980900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs140980900-A	0.01045	2E-9	(CRK)	0.01007	NR unit decrease	Illumina [1671387] (imputed)	N
772	chr22	24621540	24621541	rs140980900	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs140980900-A	0.01045	1E-9	(PPP1R7)	0.02945	NR unit decrease	Illumina [1671387] (imputed)	N
772	chr22	24621825	24621826	rs7288670	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q11.23		rs7288670-A	0.694	1E-14				Affymetrix [10369434] (imputed)	N
772	chr22	24621825	24621826	rs7288670	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	22q11.23		rs7288670-A	0.694	5E-8				Affymetrix [10369434] (imputed)	N
772	chr22	24621825	24621826	rs7288670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q11.23	GGT5	rs7288670-G	0.306276	1E-14		0.018646376	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
772	chr22	24621825	24621826	rs7288670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q11.23	GGT5	rs7288670-G	0.306179	4E-17		0.020226618	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
772	chr22	24621825	24621826	rs7288670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q11.23	GGT5	rs7288670-G	0.306197	2E-28		0.026629068	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
772	chr22	24621825	24621826	rs7288670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.23	NR	rs7288670-G	0.290439	8E-33				Affymetrix, Illumina [19872809] (imputed)	N
772	chr22	24621825	24621826	rs7288670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q11.23	NR	rs7288670-G	0.306249	5E-34		0.026272	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
772	chr22	24621825	24621826	rs7288670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q11.23		rs7288670-?	NR	6E-32				NR [~ 8900000] (imputed)	N
772	chr22	24621825	24621826	rs7288670	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	22q11.23	GGT5	rs7288670-G	0.3075	8E-11		0.02512021	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
772	chr22	24621825	24621826	rs7288670	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q11.23	GGT5	rs7288670-G	0.3077	4E-25		0.04004887	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
772	chr22	24621825	24621826	rs7288670	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	22q11.23	GGT5	rs7288670-G	0.3075	2E-9		0.02307912	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
772	chr22	24622647	24622648	rs2275984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q11.23	GGT5	rs2275984-C	0.3078	3E-14		0.02930582	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
772	chr22	24622647	24622648	rs2275984	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	22q11.23	GGT5	rs2275984-C	0.3078	7E-12		0.02649131	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
772	chr22	24623136	24623137	rs9608255	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.23	NR	rs9608255-C	0.283797	1E-22				Affymetrix, Illumina [24649327] (imputed)	N
772	chr22	24624010	24624011	rs28765434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q11.23		rs28765434-C	NR	2E-25		0.0265	[0.022-0.031] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
772	chr22	24624010	24624011	rs28765434	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q11.23		rs28765434-C	NR	2E-22		0.0188	[0.015-0.023] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
772	chr22	24624034	24624035	rs9612569	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	22q11.23		rs9612569-A	0.1794	3E-8		0.0877	[0.057-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
772	chr22	24624608	24624609	rs34505104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q11.23	GGT5	rs34505104-G	0.305912	9E-18		0.02063462	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
772	chr22	24624608	24624609	rs34505104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q11.23	GGT5	rs34505104-G	0.305956	5E-37		0.03062183	[0.026-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
772	chr22	24624608	24624609	rs34505104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q11.23	NR	rs34505104-G	0.304866	3E-23		0.02041	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
772	chr22	24624608	24624609	rs34505104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.23	NR	rs34505104-G	0.29093	1E-56				Affymetrix, Illumina [23467995] (imputed)	N
772	chr22	24624608	24624609	rs34505104	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q11.23	NR	rs34505104-G	0.305345	6E-57		0.033131	[0.029-0.037] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
772	chr22	24624608	24624609	rs34505104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q11.23		rs34505104-?	NR	3E-18				NR [~ 8900000] (imputed)	N
772	chr22	24628514	24628515	rs187266062	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	22q11.23	GGT5	rs187266062-A	0.0056	9E-6		0.278	[0.16-0.4] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
772	chr22	24633373	24633377	rs67402234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q11.23		rs67402234-A	NR	5E-10		0.0133	[0.0092-0.0174] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
772	chr22	24639877	24639878	rs35720801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q11.23	NR	rs35720801-A	0.258093	8E-18				Affymetrix, Illumina [23472807] (imputed)	N
772	chr22	24639877	24639878	rs35720801	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q11.23	NR	rs35720801-A	0.274554	7E-20		0.019895	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
773	chr22	24642008	24642009	rs34288539	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q11.23	NR	rs34288539-T	0.273948	6E-11		0.015157	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
773	chr22	24644570	24644571	rs11704880	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q11.23	AP000354.4	rs11704880-T	0.268323	6E-17		0.021144059	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
773	chr22	24644635	24644636	rs2276449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q11.23	AP000354.4	rs2276449-A	0.22051	2E-15		0.021527065	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
773	chr22	24658857	24658858	rs180803	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	22q11.23	POM121L9P	rs180803-G	0.97779	2E-8		1.16	[1.10-1.22]	NR [8126035] (imputed)	N
773	chr22	24658857	24658858	rs180803	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	22q11.23	POM121L9P, ADORA2A	rs180803-G	0.977	7E-10		1.18	[1.12-1.24]	Affymetrix [9149595] (imputed)	N
773	chr22	24658857	24658858	rs180803	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Myocardial infarction	27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	22q11.23	POM121L9P	rs180803-G	0.97	4E-9	(additive model)	1.21	[1.14-1.28]	Affymetrix, Illumina [8600000] (imputed)	N
773	chr22	24658857	24658858	rs180803	26343387	Nikpay M	2015-09-07	Nat Genet	A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease.	Coronary artery disease	42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3,337 Hispanic American controls, 12,899 South Asian ancestry controls, 466 Lebanese ancestry controls, 7,709 East Asian ancestry controls	NA	22q11.23	POM121L9P, ADORA2A	rs180803-G	0.97	2E-10	(additive model)	1.2	[1.13-1.27]	Affymetrix, Illumina [8600000] (imputed)	N
773	chr22	24660781	24660781	rs71189240	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	22q11.23		rs71189240-?	NR	7E-6		1.268	[1.143-1.406]	Affymetrix [7975321] (imputed)	N
773	chr22	24662170	24662171	rs5760293	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	22q11.23	POM121L9P, SPECC1L, SPECC1L-ADORA2A	rs5760293-T	0.9695	9E-10		0.1275	[0.087-0.168] unit increase	NR [8041861] (imputed)	N
773	chr22	24665281	24665282	rs148417465	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	22q11.23		rs148417465-?	NR	3E-8		1.856	[1.491-2.311]	Affymetrix [7975321] (imputed)	N
773	chr22	24666338	24666340	rs113150987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q11.23		rs113150987-T	NR	2E-11		0.0178	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
773	chr22	24697756	24697757	rs6004124	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	22q11.23	SPECC1L	rs6004124-G	0.95	3E-9		1.1	[1.08-1.12]	Illumina [5167567] (imputed)	N
773	chr22	24703391	24703392	rs118072845	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs118072845-G	NR	1E-21		0.0626	[0.05-0.075] unit increase	Affymetrix [9000000] (imputed)	N
773	chr22	24709419	24709420	rs35783914	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs35783914-T	NR	3E-26		0.1626	[0.13-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
773	chr22	24713140	24713141	rs62233115	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q11.23		rs62233115-C	0.27	8E-9		5.76	z score increase	Affymetrix [9061022] (imputed)	N
773	chr22	24716719	24716720	rs9624456	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	22q11.23	SPECC1L-ADORA2A	rs9624456-?	NR	4E-13		0.0866705	[0.063-0.11] unit decrease	Illumina [4804024] (imputed)	N
773	chr22	24717517	24717518	rs3747113	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	22q11.23	NR	rs3747113-?	NR	3E-7	(genus_Lactococcus)	0.8011847	[0.5-1.1] unit increase	Affymetrix [210924]	N
773	chr22	24718407	24718408	rs55723436	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	22q11.23	SPECC1L	rs55723436-A	0.006177	3E-7		5.596	2.669-11.74	Illumina [164395]	N
773	chr22	24721506	24721506	rs769621859	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	22q11.23		rs769621859-GATTT,rs769621859-GATTT	0.760718	5E-8		0.0257434	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
773	chr22	24721506	24721506	rs769621859	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	22q11.23		rs769621859-GATTT,rs769621859-GATTT	0.760718	5E-8		0.0257434	[0.016-0.035] unit increase	NR [11722792] (imputed)	N
773	chr22	24726916	24726917	rs118133842	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs118133842-G	NR	1E-38		0.1112	[0.094-0.128] unit increase	Affymetrix [9000000] (imputed)	N
773	chr22	24729209	24729210	rs78254370	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs78254370-G	NR	6E-50		0.0933	[0.081-0.106] unit increase	Affymetrix [9000000] (imputed)	N
773	chr22	24747030	24747031	rs2330783	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	22q11.23	SPECC1L-ADORA2A	rs2330783-G	0.986	2E-12		0.0442	[0.032-0.057] unit increase	Affymetrix [~ 7740000] (imputed)	N
773	chr22	24753023	24753024	rs201838815	29563502	Fejzo MS	2018-03-21	Nat Commun	Placenta and appetite genes GDF15 and IGFBP7 are associated with hyperemesis gravidarum.	Severity of nausea and vomiting of pregnancy	14,988 European ancestry individuals with no NVP, 14,292 European ancestry individuals with slight NVP, 17,786 European individuals with moderate NVP, 5,445 European ancestry individuals with severe NVP, 1,220 European ancestry individuals with very severe NVP	NA	22q11.23	SPECC1L, SPECCl, ADORA2A	rs201838815-?	0.02	6E-9		0.159	[0.105-0.212] unit decrease	Illumina [11956931] (imputed)	N
773	chr22	24771954	24771955	rs5760378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q11.23	SPECC1L, SPECC1L-ADORA2A	rs5760378-C	0.224587	1E-10		0.017384147	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
774	chr22	24797177	24797178	rs117071777	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117071777-G	NR	2E-10		0.0627	[0.043-0.082] unit decrease	Affymetrix [9000000] (imputed)	N
774	chr22	24820267	24820268	rs9624470	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	22q11.23	SPECC1L, SPECC1L-ADORA2A, ADORA2A, UPB1	rs9624470-G	0.419254	7E-29		0.02534	[0.021-0.03] unit decrease	Affymetrix [19400838] (imputed)	N
774	chr22	24820267	24820268	rs9624470	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	22q11.23	SPECC1L-ADORA2A	rs9624470-A	0.5794	4E-16		0.0126	[0.0097-0.0155] unit increase	Affymetrix [~ 7740000] (imputed)	N
774	chr22	24826671	24826672	rs3761422	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	22q11.23	NR	rs3761422-C	0.607	3E-8		0.00750734	[0.0049-0.0102] unit increase	NR [~ 9732723] (imputed)	N
774	chr22	24842451	24842452	rs5760425	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	22q11.23	SPECC1L-ADORA2A	rs5760425-T	0.391409	4E-9	(EA)	0.00745825	[0.005-0.0099] unit increase	Affymetrix [~ 8800000] (imputed)	N
774	chr22	24842608	24842609	rs141221896	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	22q11.23		rs141221896-?	NR	2E-8		1.833	[1.484-2.264]	Affymetrix [7975321] (imputed)	N
774	chr22	24843991	24843991	rs199612805	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	22q11.23	SPECC1L-ADORA2A, ADORA2A	rs199612805-T	0.986403	3E-21		0.095734	[0.076-0.116] unit increase	Affymetrix [19400838] (imputed)	N
774	chr22	24844882	24844883	rs17651189	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	22q11.23	SNRPD3, SPECC1L, TMEM211, TOP1P2, UNQ2565, UPB1, GSTT1, SUSD2, GGT5, ADORA2A, ADORA2A-AS1, BCRP3, CABIN1, DKFZp434K191, DQ570150, DQ571461, DQ576853, EU036692, FAM211B, GGT1, GSTTP2, GUCD1, LOC391322, PIWIL3, POM121L10P, POM121L9P, SGSM1	rs17651189-C	0.0507	6E-7		1.44	[1.24-1.68]	Illumina [7300000] (imputed)	N
774	chr22	24844947	24844948	rs17004922	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	22q11.23	NR	rs17004922-A	0.0141	3E-8		0.0483869	[0.031-0.066] unit increase	Affymetrix [10613246] (imputed)	N
774	chr22	24874522	24874523	rs62234058	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	22q11.23	ADORA2A	rs62234058-?	NR	4E-7	(AA)	0.04113796	[0.025-0.057] unit decrease	Illumina [32504442] (imputed)	N
774	chr22	24874522	24874523	rs62234058	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	22q11.23	ADORA2A	rs62234058-?	NR	3E-6	(Hispanic/Latino)	0.05616214	[0.033-0.08] unit decrease	Illumina [32504442] (imputed)	N
774	chr22	24874522	24874523	rs62234058	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Coffee consumption (cups per day)	11,862 African American individuals, 15,837 Hispanic/Latino individuals, 3,764 Asian ancestry individuals, 3,857 Native Hawaiian ancestry individuals, 582 Native American ancestry individuals	NA	22q11.23	ADORA2A	rs62234058-?	NR	1E-12		0.047	[0.033-0.061] unit decrease	Illumina [32504442] (imputed)	N
774	chr22	24878217	24878218	rs5760444	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Coffee consumption	152,634 Japanese ancestry individuals	NA	22q11.23	ADORA2A-AS1	rs5760444-?	NR	4E-10		0.073	[0.051-0.095] unit decrease	Illumina [6108828] (imputed)	N
774	chr22	24882924	24882925	rs1543757	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs1543757-A	NR	5E-87		0.1336	[0.12-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
774	chr22	24883217	24883218	rs28360612	30542056	Petridis C	2018-12-12	Nat Commun	Genome-wide meta-analysis implicates mediators of hair follicle development and morphogenesis in risk for severe acne.	Acne (severe)	5,602 European ancestry cases, 21,120 European ancestry controls	NA	22q11.23	SPECC1L	rs28360612-T	0.72	1E-8		1.15	[1.10-1.21]	Illumina [up to 7441713] (imputed)	N
774	chr22	24885207	24885208	rs73169830	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	22q11.23	ADORA2A-AS1	rs73169830-C	0.0764	2E-11		0.0192	[0.014-0.025] unit increase	Affymetrix [~ 7740000] (imputed)	N
774	chr22	24886386	24886387	rs4822504	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Supramarginal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q11.23	ADORA2A-AS1, UPB1	rs4822504-?		9E-6				Illumina [4322238] (imputed)	N
774	chr22	24888085	24888086	rs117861545	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	22q11.23	NR	rs117861545-A	0.9859	9E-6		0.7431	[0.42-1.07] unit increase	Illumina [NR] (imputed)	N
774	chr22	24891354	24891355	rs2070475	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	22q11.23	NR	rs2070475-T	0.1641	5E-10		1.11	[1.07-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
774	chr22	24894855	24894856	rs3788372	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	22q11.23	UPB1	rs3788372-A	0.5926	8E-8		0.0088	[0.0057-0.0119] unit increase	Affymetrix [~ 7740000] (imputed)	N
774	chr22	24901967	24901968	rs181251778	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	22q11.23	UPB1	rs181251778-A	0.986146	2E-13		0.072648	[0.053-0.092] unit increase	Affymetrix [19400838] (imputed)	N
774	chr22	24902605	24902606	rs738814	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	22q11.23	UPB1	rs738814-A	0.566	8E-7		0.008	[0.0049-0.0111] unit increase	Affymetrix [~ 7740000] (imputed)	N
775	chr22	24906361	24906361	rs141327056	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q11.23	UPB1	rs141327056-G	0.984908	3E-19	(3-ureidopropionate)	0.881	[0.69-1.07] unit decrease	Illumina [13039987] (imputed)	N
775	chr22	24914296	24914297	rs117529934	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117529934-A	NR	1E-16		0.0591	[0.045-0.073] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24914574	24914575	rs73152503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs73152503-T	NR	4E-38		0.057	[0.048-0.066] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24916181	24916182	rs11704936	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs11704936-A	NR	1E-14		0.0391	[0.029-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr22	24919015	24919016	rs140339	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis B	1,425 European ancestry cases, 218,180 European ancestry controls	NA	22q11.23	NR	rs140339-?	NR	2E-7		0.7734	[0.51-1.03] unit increase	Illumina [at least 560000] (imputed)	N
775	chr22	24919585	24919586	rs143493067	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs143493067-A	NR	7E-32		0.335	[0.28-0.39] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24920321	24920322	rs12159862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs12159862-G	NR	4E-51		0.0478	[0.042-0.054] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24931832	24931833	rs141349354	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	GUCD1	rs141349354-A	0.916795	5E-32		0.0110322	[0.0092-0.0129] unit decrease	Affymetrix [13995440] (imputed)	N
775	chr22	24932040	24932041	rs60136931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs60136931-C	NR	1E-14		0.1861	[0.14-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr22	24939981	24939982	rs62231931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs62231931-T	NR	2E-28		0.1223	[0.1-0.14] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr22	24983263	24983264	rs16978740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs16978740-T	NR	1E-51		0.105	[0.091-0.119] unit decrease	Affymetrix [9000000] (imputed)	N
775	chr22	24985839	24985840	rs61737674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs61737674-T	NR	5E-14		0.1975	[0.15-0.25] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24986144	24986145	rs9306395	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	22q11.23	NR	rs9306395-?	NR	3E-170		0.1405	[0.13-0.15] unit increase novel	Illumina [6108953] (imputed)	N
775	chr22	24990212	24990213	rs4820599	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	LRRC75B	rs4820599-A	0.715733	1E-300		0.0356552	[0.035-0.037] unit decrease	Affymetrix [13995440] (imputed)	N
775	chr22	24990212	24990213	rs4820599	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs4820599-G	NR	5E-741		0.1534	[0.15-0.16] unit increase	Affymetrix [9000000] (imputed)	N
775	chr22	24990212	24990213	rs4820599	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Gamma glutamyl transpeptidase	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q11.23	GGT1, C22orf36	rs4820599-G	0.24	7E-53		0.0088	[0.0076-0.0100] IU/L decrease	Affymetrix [~ 2200000] (imputed)	N
775	chr22	24990212	24990213	rs4820599	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	22q11.23	GGT1, C22orf36	rs4820599-G	0.31	4E-11	(GGT)	0.01	[0.005-0.009] U/L increase	Affymetrix, Illumina [up to 496032]	N
775	chr22	24992265	24992266	rs5751901	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	22q11.23	GGT1	rs5751901-?	NR	3E-12	(cysteineglutathionedisulfide)	0.05311	[NR] unit decrease	Affymetrix [655658]	N
775	chr22	24992265	24992266	rs5751901	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	22q11.23	GGT1	rs5751901-?	0.39	2E-7	(GGT1)			Illumina [496032]	N
775	chr22	24992953	24992954	rs199837761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	22q11.23		rs199837761-A	NR	2E-10		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
775	chr22	24994295	24994296	rs6004193	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	22q11.23	GGT1	rs6004193-?	NR	4E-300		0.2407	[0.23-0.25] unit increase novel	Illumina [6108953] (imputed)	N
775	chr22	24994938	24994939	rs743371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	22q11.23		rs743371-G	0.327461	1E-772		0.223523	[0.22-0.23] unit increase	Illumina [13476165] (imputed)	N
775	chr22	24995133	24995134	rs5760491	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	22q11.23		rs5760491-?	NR	2E-18		1.578	[1.425-1.748]	Affymetrix [7975321] (imputed)	N
775	chr22	24995667	24995668	rs2006092	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q11.23		rs2006092-?	NR	1E-63		0.0160736	[0.014-0.018] unit decrease	NR [NR]	N
775	chr22	24995667	24995668	rs2006092	32084209	Seo JY	2020-02-21	PLoS One	A genome-wide association study on liver enzymes in Korean population.	Gamma glutamyl transferase levels	4,457 Korean ancestry individuals	2,031 Korean ancestry individuals	22q11.23	GGT1, SNRPD3	rs2006092-G	0.342	5E-11		6.604	[4.64-8.56] unit increase	Affymetrix [546738]	N
775	chr22	24995667	24995668	rs2006092	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	22q11.23	NR	rs2006092-?	NR	1E-15		0.046	[0.038-0.054] unit increase	Illumina [~ 7800000] (imputed)	N
775	chr22	24995755	24995756	rs2006227	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	22q11.23	GGT1	rs2006227-?	NR	2E-8	(Gamma Glutamyltransferase)			Illumina [up to 10879115] (imputed)	N
775	chr22	24996629	24996630	rs5751902	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	22q11.23	GGT1	rs5751902-T	0.37	8E-20	(GGT)	0.172	[0.13-0.21] unit decrease	Illumina [561583]	N
775	chr22	24997069	24997070	rs3859862	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q11.23	GGT1	rs3859862-?		5E-635		0.2404	[0.23-0.25] unit increase	Illumina [31500000] (imputed)	N
775	chr22	24997085	24997086	rs2006094	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	22q11.23		rs2006094-?	NR	2E-17		1.593	[1.431-1.774]	Affymetrix [7975321] (imputed)	N
775	chr22	24997085	24997086	rs2006094	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	22q11.23		rs2006094-?	0.3523	1E-39		0.006488	unit increase	NR [6200000] (imputed)	N
775	chr22	24998618	24998619	rs2330805	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	22q11.23		rs2330805-?	NR	4E-29		1.592	[1.468-1.727]	Affymetrix [7975321] (imputed)	N
775	chr22	24999103	24999104	rs2073398	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q11.23		rs2073398-G	NR	2E-2353		0.2111	[0.21-0.22] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
775	chr22	24999103	24999104	rs2073398	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	22q11.23	GGT1, GGTLC2	rs2073398-G	0.34	1E-109		12.3	[10.90-13.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
775	chr22	25000460	25000461	rs5760495	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	22q11.23	NR	rs5760495-T	0.3566	1E-11		0.00156	[0.0011-0.002] unit increase	Affymetrix [NR] (imputed)	N
775	chr22	25000460	25000461	rs5760495	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q11.23	GGT1	rs5760495-C	0.463034	9E-37	(cysteine-glutathione disulfide)	0.281	[0.24-0.32] unit increase	Illumina [13039987] (imputed)	N
775	chr22	25002080	25002081	rs2330809	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q11.23	GGT1	rs2330809-T	0.32	2E-13	(cysteine-glutathione disulfide)	0.055	[0.041-0.069] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
775	chr22	25004986	25004987	rs57719575	34376796	Sun Q	2021-08-11	J Hum Genet	Analyses of biomarker traits in diverse UK biobank participants identify associations missed by European-centric analysis strategies.	Gamma glutamyl transferase levels	9,354 African ancestry individuals	NA	22q11.23		rs57719575-C	0.1486	4E-38		0.28	[0.24-0.32] U/L decrease	NR [NR] (imputed)	N
775	chr22	25010762	25010763	rs766717298	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs766717298-?	NR	1E-16		2.12145	[1.59-2.65] unit decrease	NR [9800000] (imputed)	N
775	chr22	25010854	25010855	rs186765281	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	GGT1	rs186765281-A	0.984362	2E-308		0.0772137	[0.073-0.081] unit increase	Affymetrix [13995440] (imputed)	N
775	chr22	25011076	25011077	rs375956048	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs375956048-?	NR	2E-28		0.756419	[0.62-0.89] unit decrease	NR [9800000] (imputed)	N
775	chr22	25011900	25011901	rs4822523	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs4822523-T	0.34	2E-11	(gamma-glutamyl-epsilon-lysine, gamma-glutamylglycine, gamma-glutamylhistidine, gamma-glutamylleucine, gamma-glutamylphenylalanine, gamma-glutamylthreonine, tryptamine, tyramine, X-23593)	0.006	[0.004-0.008] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25011900	25011901	rs4822523	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs4822523-T	0.34	5E-12	(gamma-glutamylhistidine)	0.484	[0.35-0.62] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25011900	25011901	rs4822523	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs4822523-T	0.34	3E-16	(gamma-glutamyl-epsilon-lysine)	0.564	[0.43-0.7] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25011900	25011901	rs4822523	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs4822523-T	0.34	3E-14	(gamma-glutamylphenylalanine)	0.575	[0.43-0.72] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25012939	25012940	rs9612676	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs9612676-A	0.34	2E-12	(gamma-glutamylglycine)	0.424	[0.31-0.54] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25013345	25013346	rs5751909	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q11.23	GGT1	rs5751909-A	0.34	3E-15	(gamma-glutamylleucine)	0.527	[0.4-0.66] unit increase	Illumina [7750367] (imputed)	N
775	chr22	25019108	25019109	rs113647199	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs113647199-?	NR	7E-18		1.02135	[0.79-1.26] unit decrease	NR [9800000] (imputed)	N
775	chr22	25024146	25024147	rs752649541	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs752649541-?	NR	3E-47		1.32851	[1.14-1.52] unit decrease	NR [9800000] (imputed)	N
775	chr22	25024149	25024150	rs750712905	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs750712905-?	NR	2E-11		1.16578	[0.8-1.53] unit decrease	NR [9800000] (imputed)	N
775	chr22	25024732	25024733	rs917000605	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs917000605-?	NR	9E-286		1.40846	[1.33-1.49] unit decrease	NR [9800000] (imputed)	N
775	chr22	25024768	25024769	rs1217124974	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Gamma glutamyl transferase levels	437,651 European ancestry individuals	NA	22q11.23		rs1217124974-?	NR	4E-32		1.25142	[1.04-1.47] unit decrease	NR [9800000] (imputed)	N
775	chr22	25027282	25027283	rs5747734	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q11.23		rs5747734-?	NR	4E-9		0.0103303	[0.0069-0.0138] unit decrease	NR [NR]	N
775	chr22	25027282	25027283	rs5747734	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	BCRP3	rs5747734-G	0.919325	1E-300		0.0373194	[0.035-0.039] unit decrease	Affymetrix [13995440] (imputed)	N
776	chr22	25081103	25081104	rs2330909	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs2330909-G	NR	1E-19		0.0265	[0.021-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
776	chr22	25084814	25084815	rs115231893	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Gamma glutamyl transferase levels	up to 9,004 African ancestry individuals	NA	22q11.23		rs115231893-G	0.924	1E-60		0.43	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
776	chr22	25100465	25100466	rs5996749	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs5996749-T	NR	7E-10		0.0338	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
776	chr22	25101795	25101796	rs9624565	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q11.23	PIWIL3	rs9624565-C	0.85798	2E-104		0.0160207	[0.015-0.017] unit decrease	Affymetrix [13995440] (imputed)	N
776	chr22	25123030	25123031	rs13055481	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs13055481-G	NR	3E-14		0.0371	[0.027-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
776	chr22	25128337	25128338	rs118105649	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs118105649-T	NR	1E-21		0.0796	[0.063-0.096] unit decrease	Affymetrix [9000000] (imputed)	N
776	chr22	25131984	25131985	rs9624575	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	22q11.23	PIWIL3	rs9624575-G	0.134682	8E-6		0.481436	[0.27-0.69] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
776	chr22	25155142	25155143	rs6004262	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	22q11.23	PIWIL3, SGSM1, ARL5AP4, POM121L10P	rs6004262-T	NR	3E-6	(mid-sleep time, weekdays)	0.1826	[0.11-0.26] unit increase	Affymetrix [7141204] (imputed)	N
776	chr22	25158444	25158445	rs56032751	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs56032751-A	NR	8E-50		0.1449	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
777	chr22	25168877	25168878	rs117841213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117841213-T	NR	2E-28		0.1067	[0.088-0.126] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr22	25194794	25194795	rs117357447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117357447-C	NR	3E-21		0.065	[0.051-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr22	25196041	25196042	rs80127063	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs80127063-T	NR	3E-10		0.0305	[0.021-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
777	chr22	25204513	25204514	rs139621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs139621-C	NR	1E-23		0.0413	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
777	chr22	25209779	25209780	rs6004297	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	22q11.23	SGSM1	rs6004297-T	0.1794	9E-6		0.6191	[0.35-0.89] unit increase	Illumina [9520174] (imputed)	N
777	chr22	25210305	25210306	rs73155719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	22q11.23		rs73155719-G	NR	4E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
777	chr22	25212904	25212905	rs67760767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs67760767-T	NR	2E-60		0.0422	[0.037-0.047] unit increase	Affymetrix [9000000] (imputed)	N
777	chr22	25214696	25214697	rs116907851	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage Migration Inhibitory Factor levels	3,494 Finnish ancestry individuals	NA	22q11.23	NR	rs116907851-C	NR	1E-6		0.9062	[0.54-1.27] SD units increase	NR [10700000] (imputed)	N
777	chr22	25218119	25218120	rs113781727	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	22q11.23	SGSM1	rs113781727-?	NR	5E-9				NR [3144808] (imputed)	N
777	chr22	25248273	25248274	rs62231150	34476894	Schmitz J	2021-09-03	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study and polygenic risk score analysis for hearing measures in children.	Hearing function	5,344 European ancestry children	NA	22q11.23		rs62231150-G	0.93	6E-6		0.17	[0.092-0.248] unit increase	Illumina [5305352] (imputed)	N
777	chr22	25249120	25249121	rs139678	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	22q11.23	SGSM1	rs139678-T	0.75	3E-6	(Slope index)	0.149	[0.086-0.212] unit decrease	Affymetrix [8042262] (imputed)	N
777	chr22	25263047	25263048	rs56022312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs56022312-A	NR	1E-15		0.026	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
777	chr22	25273231	25273232	rs144172548	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	22q11.23	Intergenic	rs144172548-?		7E-6		124.4	[70.11-178.69] unit increase	Illumina [~ 10000000] (imputed)	N
777	chr22	25281331	25281332	rs117337134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs117337134-G	NR	5E-10		0.0476	[0.033-0.063] unit increase	Affymetrix [9000000] (imputed)	N
777	chr22	25284455	25284456	rs139723	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q11.23	NR	rs139723-T	NR	2E-18		0.0267	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
778	chr22	25299428	25299429	rs139743	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		22q11.23	SGSM1	rs139743-A	0.582	4E-7		0.015	[0.0091-0.0209] dioptres decrease	NR [5900115] (imputed)	N
778	chr22	25310128	25310129	rs145832854	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	22q11.23	SGSM1	rs145832854-G	0.98	3E-8		1.87	[1.50-2.33]	Affymetrix, Illumina [7891602] (imputed)	N
778	chr22	25334976	25334977	rs5760748	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	22q11.23	TMEM211	rs5760748-C	0.31	9E-6		0.00179	[0.001-0.00258] unit decrease	Affymetrix [1219546] (imputed)	N
778	chr22	25411419	25411420	rs1883282	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q11.23	KIAA1671	rs1883282-T	0.821287	7E-10		0.0150223	[0.01-0.02] unit increase	NR [13737936] (imputed)	N
778	chr22	25411419	25411420	rs1883282	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q11.23		rs1883282-?	NR	9E-9				NR [~ 8900000] (imputed)	N
778	chr22	25411419	25411420	rs1883282	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q11.23		rs1883282-?	NR	6E-9		0.0148027	[0.0094-0.0202] unit increase	Affymetrix [20259828] (imputed)	N
778	chr22	25425438	25425439	rs12330067	27325353	Matteini AM	2016-06-21	Aging Cell	GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.	Lower body strength	9,822 European ancestry individuals	NA	22q11.23	KIAA1671	rs12330067-A	0.58	2E-6		4.76	NR Z score increase	Affymetrix, Illumina [2725778] (imputed)	N
779	chr22	25465827	25465828	rs6004421	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	22q11.23	NR	rs6004421-?		2E-6		4.2574	[3.66-4.86]	NR [NR] (imputed)	N
779	chr22	25482990	25482991	rs5760842	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	22q11.23	intergenic	rs5760842-A	NR	2E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
780	chr22	25567695	25567696	rs200507792	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	22q11.23	NR	rs200507792-?	NR	6E-6		0.0677	[0.038-0.097] unit increase	Illumina [at least 560000] (imputed)	N
780	chr22	25616450	25616451	rs2267078	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	22q11.23	CRYBB2	rs2267078-A	0.045	7E-8	(Fluoroquinolones [J01MA])	2.66		Illumina [16500000] (imputed)	N
781	chr22	25700182	25700183	rs133124	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	22q11.23	NR	rs133124-?	NR	5E-21		9.419	NR z score increase	Illumina [at least 830937] (imputed)	N
781	chr22	25718622	25718623	rs5752128	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	22q11.23	NR	rs5752128-C	NR	4E-6		0.1685	[0.096-0.241] SD units increase	NR [10700000] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	8E-10	(ATP5F1D)	0.02809	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	5E-9	(MPC1)	0.007747	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	4E-9	(ATP5PB)	0.04616	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	2E-8	(ATP5PO)	0.1394	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	2E-8	(ATP5MG)	0.06769	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	2E-8	(ATP5F1B)	1.217	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	1E-9	(MPC2)	0.02867	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	1E-8	(ETFDH)	0.1291	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25781897	25781897	rs112158984	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs112158984-AG	0.0331	1E-8	(ATP5F1A)	1.036	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25799152	25799153	rs146949712	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs146949712-T	0.01568	2E-9	(GLDC)	3.167	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25799152	25799153	rs146949712	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q11.23	NR	rs146949712-T	0.01568	2E-8	(ATP5MG)	0.09486	NR unit increase	Illumina [1671387] (imputed)	N
781	chr22	25816472	25816473	rs133277	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	22q11.23	NR	rs133277-?	NR	5E-12		0.18	[0.12-0.24] unit decrease	Illumina [at least 830937] (imputed)	N
782	chr22	25875264	25875265	rs1930961	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	22q11.23	CRYBB2P1	rs1930961-?	NR	9E-6		1.39	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
782	chr22	25875572	25875573	rs5996945	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q11.23	NR	rs5996945-?	NR	1E-8				Affymetrix [NR]	N
782	chr22	25911055	25911056	rs489125	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	22q12.1		rs489125-A	NR	2E-8				Illumina [1084750]	N
782	chr22	25913767	25913768	rs56217753	31537151	Freitag-Wolf S	2019-09-19	J Dent Res	Smoking Modifies the Genetic Risk for Early-Onset Periodontitis.	Early onset periodontitis x smoking status interaction	499 European ancestry ever-smoker cases, 242 European ancestry never-smoker cases	NA	22q12.1	CRYBB2P1	rs56217753-T		6E-7				NR [79780573] (imputed)	N
782	chr22	25928267	25928268	rs585050	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in non-lacunar ischaemic stroke (modified Rankin score)	3,991 European and unknown ancestry individuals	NA	22q12.1	ADRBK2	rs585050-T	0.35	2E-6		1.46	[1.3-1.62]	Affymetrix, Illumina [~ 8500000] (imputed)	N
782	chr22	25950749	25950750	rs5761116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q12.1		rs5761116-T	NR	5E-8		0.0089	[0.0058-0.012] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
783	chr22	25977639	25977640	rs376023140	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs376023140-T	0.01045	2E-8	(CPQ)	0.0264	NR unit increase	Illumina [1671387] (imputed)	N
783	chr22	25988779	25988781	rs373009901	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	22q12.1	ADRBK2	rs373009901-C	0.019	9E-6	(EA)	3.94	[NR]	Illumina [6728637] (imputed)	N
784	chr22	26159288	26159289	rs133885	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial total emptying fraction	35,658 British ancestry individuals	NA	22q12.1		rs133885-?	NR	2E-10		0.376	[0.26-0.49] unit increase	Affymetrix [10600000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	9E-9	(448 ms)	0.0329045	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	8E-9	(436 ms)	0.0329474	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	8E-10	(-30 ms)	0.0340414	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	7E-9	(432 ms)	0.0330968	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	7E-10	(464 ms)	0.0351973	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	6E-34	(-20 ms)	0.0675867	[0.056-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	5E-9	(458 ms)	0.0333493	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	5E-9	(446 ms)	0.0334777	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	5E-9	(440 ms)	0.0334719	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-9	(438 ms)	0.0337483	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-9	(434 ms)	0.0335516	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-8	(420 ms)	0.0314991	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-8	(418 ms)	0.031479	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-26	(-26 ms)	0.0586035	[0.047-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	4E-11	(-14 ms)	0.0375944	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	3E-9	(466 ms)	0.0340578	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	3E-9	(426 ms)	0.033963	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	3E-8	(442 ms)	0.0316573	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	3E-8	(428 ms)	0.0315321	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	2E-8	(444 ms)	0.032103	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	2E-33	(-24 ms)	0.0663606	[0.055-0.077] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	2E-18	(-16 ms)	0.048899	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-8	(470 ms)	0.0325469	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-8	(468 ms)	0.0325055	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-8	(450 ms)	0.0324708	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-36	(-22 ms)	0.0695986	[0.058-0.081] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-26	(-18 ms)	0.0591981	[0.048-0.07] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	22q12.1	MYO18B	rs133885-G	0.534651	1E-17	(-28 ms)	0.0476831	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
784	chr22	26159288	26159289	rs133885	23423138	Ludwig KU	2013-02-19	Transl Psychiatry	A common variant in myosin-18B contributes to mathematical abilities in children with dyslexia and intraparietal sulcus variability in adults.	Mathematical ability in children with dyslexia	200 European ancestry cases	510 European ancestry cases	22q12.1	MYO18B	rs133885-?	NR	8E-10		4.87	% increase	Illumina [NR]	N
784	chr22	26162901	26162902	rs4820654	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricular mass to end-diastolic volume ratio	19,260 European ancestry individuals	NA	22q12.1	MYO18B	rs4820654-G	0.3578	5E-8		0.0042	[0.0026-0.0058] unit increase	Affymetrix [~ 9500000] (imputed)	N
784	chr22	26162901	26162902	rs4820654	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Left ventricle wall thickness	19,260 European ancestry individuals	NA	22q12.1	MYO18B	rs4820654-G	0.3578	6E-10		0.032	[0.022-0.042] unit increase	Affymetrix [~ 9500000] (imputed)	N
784	chr22	26164078	26164079	rs133902	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	22q12.1	MYO18B	rs133902-T	0.43	8E-9		1.21	[1.13 - 1.29]	Affymetrix, Illumina [6990521] (imputed)	N
784	chr22	26164078	26164079	rs133902	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	22q12.1	MYO18B	rs133902-T	0.427	9E-10		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
784	chr22	26164078	26164079	rs133902	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	22q12.1	MYO18B	rs133902-T	0.47	1E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
784	chr22	26189656	26189657	rs5752209	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	22q12.1	NR	rs5752209-C	0.9844	3E-7	(Trans/trans-18:2, EA)	0.01	[0.0061-0.0139] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr22	26204551	26204552	rs8184969	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	22q12.1	NR	rs8184969-T	0.0153	2E-6	(Trans/trans-18:2, EA)	0.0087	[0.005-0.0124] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr22	26207909	26207910	rs5752223	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	22q12.1	NR	rs5752223-T	0.0153	3E-6	(Trans/trans-18:2, EA)	0.0087	[0.005-0.0124] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
784	chr22	26211789	26211790	rs116481116	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	22q12.1	NR	rs116481116-T		3E-6		1.2571	[0.73-1.78] unit increase	Illumina [12759548] (imputed)	N
785	chr22	26278467	26278468	rs695670	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q12.1	Intergenic	rs695670-?		6E-6		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
785	chr22	26283713	26283714	rs2285198	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	22q12.1	MYO18B	rs2285198-T	NR	4E-9	(GO:0008283|BP|02|cell proliferation)	5.889772	NR Z-score decrease	Illumina [8100000] (imputed)	N
785	chr22	26295032	26295033	rs16981003	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	22q12.1	NR	rs16981003-T	0.03439	2E-6		0.3912	[0.23-0.55] unit increase	Illumina [10677593] (imputed)	N
786	chr22	26378072	26378073	rs6004862	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	22q12.1	MYO18B	rs6004862-T	0.16	6E-6	(women)	0.097	[0.056-0.138] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
786	chr22	26378072	26378073	rs6004862	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	22q12.1	MYO18B	rs6004862-T	0.16	4E-6		0.08	[0.047-0.113] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
786	chr22	26380057	26380058	rs6004867	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	22q12.1	MYO18B	rs6004867-T	0.07	2E-6		25.52	NR mg decrease	NR [NR] (imputed)	N
786	chr22	26389954	26389955	rs6004882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.1	Intergenic	rs6004882-C	0.5762	8E-9	(MTAG)	0.0104	[0.0069-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
786	chr22	26389954	26389955	rs6004882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.1	Intergenic	rs6004882-C	0.5759	2E-9	(MTAG)	0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
786	chr22	26389954	26389955	rs6004882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q12.1	Intergenic	rs6004882-C	0.5696	3E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
786	chr22	26403598	26403599	rs1001021	20713499	Huang J	2010-08-16	Am J Psychiatry	Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression.	Schizophrenia, bipolar disorder and depression (combined)	402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls	NA	22q12.1	MYO18B	rs1001021-A	0.02	2E-6				Affymetrix, Perlegen [1574154] (imputed)	N
786	chr22	26433053	26433054	rs12157917	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	22q12.1	Intergenic	rs12157917-?	NR	7E-7		1.25	[1.15-1.35]	Affymetrix, Illumina [39235000] (imputed)	N
786	chr22	26436286	26436287	rs7292706	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.1	NR	rs7292706-?	NR	2E-15				Affymetrix [NR]	N
786	chr22	26455215	26455216	rs6004919	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	22q12.1	intergenic	rs6004919-T	0.15546	4E-6		4.608	unit decrease	Illumina [179215]	N
787	chr22	26539573	26539574	rs5752270	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	22q12.1	NR	rs5752270-T	0.04906	2E-6		0.3334	[0.2-0.47] unit decrease	Illumina [10677593] (imputed)	N
788	chr22	26653361	26653362	rs1207393	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	22q12.1	SEZ6L	rs1207393-?	0.64	5E-6	(FEV1 65%)	1.19		Affymetrix, Illumina [up to 2500000] (imputed)	N
788	chr22	26689104	26689105	rs17395296	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	ASPHD2	rs17395296-?	NR	6E-6	(TAG 58:7)	0.27922395	[0.16-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
788	chr22	26689634	26689635	rs688034	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Coronary heart disease	1,926 European ancestry cases, 2,938 European ancestry controls	(see Samani 2007)	22q12.1	intergenic	rs688034-T	0.31	4E-6		1.11	[0.99-1.25]	Affymetrix [469557]	N
788	chr22	26697194	26697195	rs591044	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	22q12.1	SEZ6L	rs591044-A	0.37	6E-6	(Insulin)	9.0	[5.00 - 13.00] % increase	Affymetrix [872243]	N
788	chr22	26704560	26704561	rs2018293	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Vascular brain injury	up to 2,940 individuals	NA	22q12.1	SEZ6L	rs2018293-T	0.185	8E-6	(Ordinal)	0.3091	[0.17-0.44] unit increase	Affymetrix, Illumina [NR] (imputed)	N
789	chr22	26835342	26835343	rs5997089	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	22q12.1	ASPHD2, HPS4	rs5997089-C	0.907	9E-6	(adjusted for severity)	1.4925373	[1.32-1.67]	Affymetrix, Illumina [~ 8500000] (imputed)	N
789	chr22	26843989	26843990	rs5752326	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	22q12.1	HPS4	rs5752326-T	0.79	9E-7	(AA)	0.31	[0.19-0.43] unit decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
789	chr22	26861969	26861970	rs6005054	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	LOC402055	rs6005054-?	NR	4E-6	(arginine)	0.9968213	[0.57-1.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
790	chr22	26870984	26870985	rs9608491	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.1	TPST2	rs9608491-A	0.848125	7E-9	(TPST2, 8024_64_3)	0.20666239	[0.14-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
790	chr22	26921724	26921725	rs4275	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TPST2	5,350 Icelandic ancestry individuals	NA	22q12.1		rs4275-G	0.3612	1E-15		0.151157	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
790	chr22	26924455	26924456	rs2283824	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.1	TPST2	rs2283824-A	0.417	6E-23	(Protein-tyrosine sulfotransferase 2, TPST2.8024.64.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
790	chr22	26941222	26941223	rs1007876	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Episodic memory (pairs-matching)	331,679 British ancestry individuals	NA	22q12.1		rs1007876-?	NR	2E-9				NR [7857346] (imputed)	N
790	chr22	26959825	26959826	rs2283831	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	22q12.1	TPST2	rs2283831-A	0.2522	4E-6				Illumina [4404269] (imputed)	N
790	chr22	26959825	26959826	rs2283831	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	22q12.1	TPST2	rs2283831-A	0.2357	4E-6	(African)			Illumina [4404269] (imputed)	N
790	chr22	26993705	26993706	rs5761618	27016271	Kornilov SA	2016-03-25	Pediatrics	Genome-Wide Association and Exome Sequencing Study of Language Disorder in an Isolated Population.	Developmental language disorder (linguistic errors)	149 isolated population cases, 210 isolated population controls	NA	22q12.1	NR	rs5761618-?	0.494	2E-6	(Well-formedness)	0.349	[0.21-0.49] unit increase	Illumina [223580]	N
791	chr22	27001363	27001364	rs7290642	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	TPST2	rs7290642-?	NR	9E-6	(TAG 52:3)	0.90501136	[0.5-1.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr22	27001363	27001364	rs7290642	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	TPST2	rs7290642-?	NR	2E-6	(DAG 36:2)	0.97493505	[0.57-1.38] unit decrease	Affymetrix [at least 2500000] (imputed)	N
791	chr22	27011419	27011420	rs4822752	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q12.1	NR	rs4822752-?	NR	9E-6		1.216	[NR]	Affymetrix [722112]	N
791	chr22	27025916	27025917	rs5752360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q12.1		rs5752360-T	NR	2E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
791	chr22	27025916	27025917	rs5752360	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs5752360-T	0.202984	3E-10				Affymetrix, Illumina [24649327] (imputed)	N
791	chr22	27041282	27041283	rs16982515	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q12.1	NR	rs16982515-C	0.919024750334374	3E-6	(IGP35)	0.3117	[0.18-0.44] unit decrease	Illumina [~ 2500000] (imputed)	N
791	chr22	27042105	27042106	rs744016	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	22q12.1	intergenic	rs744016-A	0.20	5E-6		0.17	[0.09-0.25] unit decrease	Illumina [~ 318327]	N
791	chr22	27051298	27051299	rs739310	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		MIAT	rs739310-G	0.227	7E-6	(Diet protein )	0.01	[NR] %energy increase	Illumina [899892]	N
791	chr22	27066534	27066535	rs7985	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	22q12.1	MIAT	rs7985-?	NR	3E-6	(Theta power, Cz)	0.068	[0.039-0.097] unit decrease	Illumina [527829]	N
791	chr22	27084688	27084689	rs146427908	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Non-Hodgkin's lymphoma	2,400 European ancestry cases, 410,350 European ancestry controls	NA	22q12.1		rs146427908-T	0.016287	7E-7		1.5943877	NR	Affymetrix [7846216] (imputed)	N
792	chr22	27143318	27143319	rs7290369	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (parent-of-origin effect)	247 European ancestry trios, 7 European ancestry father-child pairs, 33 European ancestry mother-child pairs, 14 European ancestry affected child	NA	22q12.1	MIATNB	rs7290369-?	NR	5E-6				Illumina [NR]	N
792	chr22	27244684	27244685	rs2213770	27485664	Bonfiglio F	2016-08-03	Neurogastroenterol Motil	A meta-analysis of reflux genome-wide association studies in 6750 Northern Europeans from the general population.	Gastroesophageal reflux disease	2,247 European ancestry cases, 4,503 European ancestry controls	NA	22q12.1	LINC01422, RP1-90L6.2	rs2213770-A	0.28	7E-6				Illumina [2327020] (imputed)	N
792	chr22	27245261	27245262	rs136528	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	22q12.1	intergenic	rs136528-?	NR	3E-9		0.014924	[0.01-0.0199] unit decrease	Affymetrix [25921788] (imputed)	N
792	chr22	27245962	27245963	rs136534	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	22q12.1	intergenic	rs136534-?	NR	2E-8		0.0142965	[0.0093-0.0193] unit decrease	Affymetrix [25921788] (imputed)	N
792	chr22	27252453	27252454	rs9306427	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	22q12.1		rs9306427-?	NR	7E-6		0.3012349	[0.17-0.43] unit decrease	Illumina [9901720] (imputed)	N
792	chr22	27255689	27255690	rs136554	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q12.1	NR	rs136554-G	0.482107	4E-8		0.034421563	[0.022-0.047] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
792	chr22	27255689	27255690	rs136554	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q12.1	Intergenic	rs136554-A	0.4429	4E-8		0.0159	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
792	chr22	27257410	27257411	rs5761793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.1	Intergenic	rs5761793-A	0.4395	5E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr22	27257410	27257411	rs5761793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.1	Intergenic	rs5761793-A	0.4395	1E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr22	27257410	27257411	rs5761793	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q12.1	Intergenic	rs5761793-A	0.4431	1E-10	(MTAG)	0.0149	[0.01-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
792	chr22	27259888	27259889	rs136561	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q12.1	NR	rs136561-?	NR	2E-7		5.223	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
793	chr22	27277987	27277988	rs150240559	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	22q12.1	NR	rs150240559-?	NR	4E-6		1.17752	[0.68-1.68] unit decrease	NR [13958389] (imputed)	N
793	chr22	27339405	27339406	rs739258	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	CRYBB1	rs739258-?	NR	4E-6	(LPE 18:1)	0.25531146	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
793	chr22	27343453	27343454	rs16983214	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	22q12.1	intergenic	rs16983214-A	0.04	2E-6	(Stroop)	0.378	[0.23-0.53] unit decrease	Affymetrix [> 371951] (imputed)	N
793	chr22	27370781	27370782	rs2213767	30706531	Tao F	2019-01-31	Ann Neurol	Variation in SIPA1L2 is Correlated with Phenotype Modification in CMT Type 1A.	Reduced foot dorsiflexion strength in Charcot-Marie-Tooth disease type 1A	183 European ancestry cases severe cases, 147 European ancestry mild cases	55 Asian ancestry severe cases, 25 Asian ancestry mild cases	22q12.1	intergenic	rs2213767-T	NR	4E-6	(EA)	4.039	[2.226-7.329]	Illumina [633827]	N
793	chr22	27373462	27373463	rs16983309	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q12.1	Intergenic	rs16983309-G	NR	6E-6	(men)	0.0443648	[0.025-0.064] unit decrease	Illumina [13520550] (imputed)	N
793	chr22	27381836	27381837	rs4345013	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.1	CRYBB1	rs4345013-?	NR	3E-6	(threonine)	0.18618023	[0.11-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
794	chr22	27399575	27399576	rs2516084	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		22q12.1	intergenic	rs2516084-C	0.782	6E-6		0.513	[0.3-0.73] unit increase	Illumina [640625] (imputed)	N
794	chr22	27416824	27416825	rs4417	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	22q12.1	MIAT	rs4417-A	0.12	5E-6	(multivariate)			Illumina [319818]	N
794	chr22	27433178	27433179	rs79037	30596066	Kong LL	2018-11-01	Ann Transl Med	Genome-wide association study identifies RBFOX1 locus influencing brain glucose metabolism.	Brain glucose metabolism (fluorodeoxyglucose uptake)	37 European ancestry Alzheimer's disease cases, 126 European ancestry individuals with mild cognitive impairment, 59 European ancestry controls	NA	22q12.1	NR	rs79037-?	NR	5E-7				Illumina [319792]	N
794	chr22	27435819	27435820	rs742004	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/MHPG ratio)	up to 398 European ancestry individuals	NA	22q12.1	AK055980	rs742004-A		3E-6		0.2973	unit increase	Illumina [5767231] (imputed)	N
794	chr22	27486721	27486722	rs9608575	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q12.1	MN1	rs9608575-?		2E-11				Affymetrix, Illumina [NR] (imputed)	N
794	chr22	27512800	27512801	rs4820743	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	22q12.1	CTA-992D9.7	rs4820743-T	0.78	2E-6		0.207	[0.12-0.29] unit increase	Illumina [NR] (imputed)	N
794	chr22	27523484	27523485	rs5752494	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	348 European ancestry high cardiovascular risk elderly men	NA	22q12.1	intergenic	rs5752494-C	0.396	9E-6		0.17	[NR] unit increase	Illumina [625127]	N
795	chr22	27580687	27580688	rs9613393	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.1	NR	rs9613393-?	NR	2E-11				Affymetrix [NR]	N
795	chr22	27591794	27591795	rs115324466	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs115324466-A	0.01045	4E-9	(ALDH5A1)	0.2795	NR unit increase	Illumina [1671387] (imputed)	N
795	chr22	27606037	27606038	rs9613397	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	22q12.1		rs9613397-?	NR	8E-6		0.17	[0.096-0.244] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
795	chr22	27608086	27608087	rs7285459	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	22q12.1	NR	rs7285459-G	NR	7E-6		0.01218	[0.0069-0.0175] unit increase	Illumina [541614]	N
795	chr22	27611741	27611742	rs147512482	29059430	Morton LM	2017-11-01	J Natl Cancer Inst	Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.	Breast cancer in childhood cancer survivors	207 European ancestry female cases, 2,774 European ancestry female controls	NA	22q12.1	intergenic	rs147512482-G	0.001	2E-7		3.85	[1.67-8.9]	Affymetrix, Illumina [16958466] (imputed)	N
795	chr22	27618035	27618036	rs6005338	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild obesity-related type 2 diabetes	1,374 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	22q12.1	MN1	rs6005338-T	0.496373	5E-6		0.798	[0.724 - 0.879]	Illumina [5400100] (imputed)	N
795	chr22	27621150	27621151	rs535842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	22q12.1		rs535842-?	NR	7E-9				NR [~ 8900000] (imputed)	N
795	chr22	27649577	27649578	rs56837868	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs56837868-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
795	chr22	27649577	27649578	rs56837868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.1		rs56837868-?	NR	7E-10				NR [~ 8900000] (imputed)	N
796	chr22	27681625	27681626	rs74617949	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs74617949-C	0.05401	1E-8	(AKR1B10)	0.9927	NR unit increase	Illumina [1671387] (imputed)	N
796	chr22	27759177	27759178	rs57908830	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	22q12.1	MN1	rs57908830-C	0.973036	3E-6	(adjusted for CYP2C19*2)	0.39621	[0.23-0.56] unit increase	Illumina [5009928] (imputed)	N
796	chr22	27759272	27759273	rs77249562	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	22q12.1	CTA-929C8.8	rs77249562-G	0.041	1E-6		2.9	[1.89-4.47]	Illumina [3905175] (imputed)	N
796	chr22	27772053	27772054	rs139959245	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Osteoporosis	5,399 European ancestry cases, 51,238 European ancestry controls	NA	22q12.1		rs139959245-T	0.0073331	5E-8		1.91		Affymetrix [15544346] (imputed)	N
797	chr22	27864889	27864890	rs6005455	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	22q12.1		rs6005455-?	NR	3E-17				NR [~ 8900000] (imputed)	N
797	chr22	27864889	27864890	rs6005455	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q12.1	NR	rs6005455-T	0.372584	2E-26		0.0341996	[0.028-0.04] unit increase	NR [19129689] (imputed)	N
797	chr22	27882038	27882039	rs59264294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q12.1		rs59264294-C	0.4	3E-10		6.29	z score increase	Affymetrix [9061022] (imputed)	N
797	chr22	27882703	27882704	rs926835	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 151)	19,670 European ancestry individuals	NA	22q12.1		rs926835-?	NR	4E-14				NR [9705931] (imputed)	N
797	chr22	27887470	27887471	rs5762197	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	22q12.1	MN1	rs5762197-C	0.71	1E-7				Affymetrix, Illumina [9900000] (imputed)	N
797	chr22	27887470	27887471	rs5762197	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	22q12.1	MN1	rs5762197-C	0.71	2E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
797	chr22	27887470	27887471	rs5762197	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	22q12.1	MN1	rs5762197-C	NR	3E-8		0.0388	[0.025-0.053] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
797	chr22	27891714	27891715	rs17464499	30263053	Deng X	2018-09-17	BMC Proc	Genome-wide association study for multiple phenotype analysis.	HDL cholesterol	821 individuals	NA	22q12.1	NA	rs17464499-?		4E-6				Affymetrix [587358]	N
797	chr22	27915846	27915847	rs5762228	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	22q12.1	NR	rs5762228-T	0.04644	3E-6		1.077	[0.61-1.54] unit decrease	Illumina [at least 567677] (imputed)	N
797	chr22	27915945	27915946	rs11705126	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	22q12.1	MIAT, MN1	rs11705126-C	0.02	4E-6		0.236	[0.14-0.34] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
798	chr22	27929852	27929853	rs926937	25352737	Ritchie MD	2014-09-19	Mol Vis	Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.	Age-related cataracts	5,503 European, Black, and other ancestry cases age 50 and older, 1,894 European, Black, and other ancestry controls age 50 and older	NA	22q12.1	MN1, LOC100130624	rs926937-?	0.955	6E-6		1.17	[NR]	Illumina [530101]	N
798	chr22	27930901	27930902	rs17381914	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q12.1	NR	rs17381914-G	0.250068	6E-10		0.0225788	[0.015-0.03] unit increase	NR [19129689] (imputed)	N
798	chr22	27947342	27947343	rs16985021	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs16985021-G	0.01045	2E-8	(CSTA)	0.03369	NR unit increase	Illumina [1671387] (imputed)	N
798	chr22	27964361	27964362	rs28580426	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q12.1	NR	rs28580426-?	NR	5E-6		4.508	NR unit increase	Affymetrix [at least 600000] (imputed)	N
798	chr22	27967651	27967652	rs5752592	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q12.1	NR	rs5752592-?	NR	5E-6		4.127	NR unit increase	Affymetrix [at least 600000] (imputed)	N
798	chr22	27972478	27972479	rs9613472	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q12.1	NR	rs9613472-G	0.54	2E-10		0.00700029	[0.0049-0.0091] unit increase	NR [9732723] (imputed)	N
798	chr22	27972478	27972479	rs9613472	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	22q12.1	NR	rs9613472-G	0.54	3E-8		0.00747007	[0.0048-0.0101] unit increase	NR [~ 9732723] (imputed)	N
798	chr22	27972478	27972479	rs9613472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.1	Intergenic	rs9613472-A	0.4679	1E-10	(MTAG)	0.0116	[0.0081-0.0151] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
798	chr22	27972478	27972479	rs9613472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q12.1	Intergenic	rs9613472-A	0.4679	8E-9		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr22	27972478	27972479	rs9613472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.1	Intergenic	rs9613472-A	0.4673	6E-11	(MTAG)	0.0108	[0.0075-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
798	chr22	27978887	27978888	rs738755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q12.1		rs738755-G	NR	2E-9		0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
798	chr22	27993416	27993417	rs68043594	26265036	Parra EJ	2015-08-12	Pharmacogenomics	Genome-wide association study of warfarin maintenance dose in a Brazilian sample.	Warfarin maintenance dose	180 Brazilian ancestry low dose individuals, 187 Brazilian ancestry high dose individuals	798 European ancestry individuals, 1611 Japanese ancestry individuals, 191 African American individuals	22q12.1	NR	rs68043594-T	0.925	1E-7	(conditional on rs749671,CYP2C9*2 and CYP2C9*3, Brazilians)	55.555557	[NR]	Affymetrix [> 650000] (imputed)	N
798	chr22	28010935	28010936	rs5752598	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.1		rs5752598-A	0.147469	2E-9		0.01906049	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
798	chr22	28022727	28022728	rs133980	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	22q12.1	MN1	rs133980-?	NR	2E-8	(SBP,CPD)			Affymetrix [2485435] (imputed)	N
798	chr22	28022727	28022728	rs133980	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	22q12.1	MN1	rs133980-?	NR	1E-8	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
798	chr22	28029537	28029538	rs16985179	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		22q12.1	intergenic	rs16985179-?	0.11	6E-6		0.12	[0.061-0.179] unit decrease	Illumina [4058415] (imputed)	N
799	chr22	28053796	28053797	rs6005551	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Facial depth	2,447 European ancestry individuals	671 European ancestry individuals	22q12.1	Intergenic	rs6005551-T	0.2309	3E-7	(Middle facial depth)	0.9915	[0.5-1.48] unit decrease	Illumina [34985077] (imputed)	N
799	chr22	28054279	28054280	rs134040	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q12.1	intergenic	rs134040-A	0.5235	3E-9		0.0114	[0.0077-0.0151] unit increase	Affymetrix [18391927] (imputed)	N
799	chr22	28056337	28056338	rs134041	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	22q12.1	MN1	rs134041-T	0.4343	2E-10		0.1122	[0.078-0.147] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
799	chr22	28056337	28056338	rs134041	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	22q12.1	MIAT, MN1	rs134041-T	NR	4E-6	(adults)	0.022	[0.012-0.032] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
799	chr22	28056337	28056338	rs134041	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	22q12.1	MIAT, MN1	rs134041-T	NR	3E-9	(adults)	0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
799	chr22	28063226	28063227	rs134077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	22q12.1		rs134077-G	NR	6E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
799	chr22	28063226	28063227	rs134077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.1		rs134077-?	NR	3E-15				NR [~ 8900000] (imputed)	N
799	chr22	28063226	28063227	rs134077	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q12.1	intergenic	rs134077-A	0.42	3E-10		0.1596	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
799	chr22	28086144	28086145	rs134124	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q12.1	NR	rs134124-?	NR	7E-6		0.99	[0.92-1.06]	Illumina [539000] (imputed)	N
799	chr22	28090206	28090207	rs5762311	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	22q12.1	intergenic	rs5762311-?	0.09	7E-6	(Recessive)	2.03	[1.49-2.75]	Affymetrix [319222]	N
799	chr22	28090251	28090252	rs738352	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	22q12.1		rs738352-A	0.836	4E-8		0.009	[0.0051-0.0129] unit increase	NR [NR] (imputed)	N
799	chr22	28094844	28094845	rs1885364	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	22q12.1	NR	rs1885364-G	0.4851	6E-7		0.1501	[0.091-0.209] unit increase	Illumina [34985077] (imputed)	N
799	chr22	28149773	28149774	rs118009109	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Valine meal response (LMM)	11,410 individuals	NA	22q12.1		rs118009109-C	0.0843269	4E-8		0.180871	[0.088-0.274] unit decrease	Illumina [7568622] (imputed)	N
800	chr22	28181398	28181399	rs2283847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q12.1		rs2283847-T	NR	1E-15		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
800	chr22	28181398	28181399	rs2283847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q12.1		rs2283847-T	NR	1E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
800	chr22	28181398	28181399	rs2283847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q12.1		rs2283847-T	NR	6E-13		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554023	1E-9		0.014012761	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554201	3E-26		0.024817122	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554181	3E-16		0.01901587	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554024	9E-13		0.016432727	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554144	6E-20		0.021227384	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554079	8E-18		0.0214414	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.1	MN1	rs2283847-T	0.554098	6E-17		0.018970296	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.53008	1E-21				Affymetrix, Illumina [24588908] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.55316	1E-20		0.018207	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.532059	7E-26				Affymetrix, Illumina [24246363] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.55323	6E-27		0.020705	[0.017-0.024] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.532245	5E-25				Affymetrix, Illumina [20825802] (imputed)	N
800	chr22	28181398	28181399	rs2283847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.555185	1E-25		0.020916	[0.017-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	22q12.1	MN1	rs2283847-T	0.5569	3E-8		0.0144	[0.0093-0.0195] unit decrease	Affymetrix [19819130] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	22q12.1	MN1	rs2283847-T	0.5569	4E-19		0.0219	[0.017-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	22q12.1	MN1	rs2283847-T	0.5569	2E-15		0.019	[0.014-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.1		rs2283847-?	NR	4E-16				NR [~ 8900000] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.1		rs2283847-?	NR	1E-27				NR [~ 8900000] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.57	2E-12		0.013	[0.0095-0.0165] unit increase	Affymetrix [2446094] (imputed)	N
800	chr22	28181398	28181399	rs2283847	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	22q12.1	NR	rs2283847-T	0.57	5E-8				Affymetrix [2446094] (imputed)	N
800	chr22	28181398	28181399	rs2283847	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	22q12.1	MN1	rs2283847-T	0.5551	3E-11		0.027	[0.019-0.035] unit decrease	Affymetrix [up to 27624732] (imputed)	N
800	chr22	28181398	28181399	rs2283847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q12.1	MN1	rs2283847-T	0.5548	3E-11		0.02545171	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr22	28181398	28181399	rs2283847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.1	MN1	rs2283847-T	0.555	9E-10		0.02257768	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr22	28181398	28181399	rs2283847	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.1	MN1	rs2283847-T	0.5549	7E-11		0.02407901	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr22	28181398	28181399	rs2283847	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	22q12.1	MN1	rs2283847-T	0.45	5E-7		0.1741	[0.11-0.24] unit decrease	Affymetrix [19941912] (imputed)	N
800	chr22	28181435	28181436	rs382819	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q12.1	MN1	rs382819-C	0.7172	6E-16		0.03286007	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
800	chr22	28195385	28195386	rs45589338	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs45589338-A	0.0352	2E-10	(EA)	0.1112	[0.077-0.145] unit increase	Illumina [~ 11800000] (imputed)	N
800	chr22	28203749	28203750	rs5752640	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	22q12.1	NR	rs5752640-A		4E-6		0.2011	[0.12-0.29] unit decrease	Illumina [12759548] (imputed)	N
800	chr22	28203749	28203750	rs5752640	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	22q12.1	NR	rs5752640-A		2E-6		0.1813	[0.11-0.26] unit decrease	Illumina [12764477] (imputed)	N
800	chr22	28206911	28206912	rs11705555	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Knee osteoarthritis	61,588 European ancestry cases, 330,161 European ancestry controls, 899 Japanese ancestry cases, 3,396 Japanese ancestry controls	NA	22q12.1		rs11705555-A	0.7641	3E-9		1.0525334	[1.034940885-1.070424919]	Affymetrix, Illumina [NR] (imputed)	N
800	chr22	28206911	28206912	rs11705555	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q12.1	NR	rs11705555-C	0.248334	2E-11		0.014651	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
800	chr22	28206911	28206912	rs11705555	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	22q12.1	MN1, PITPNB	rs11705555-C	0.26	1E-8		1.23	[1.15-1.33]	Affymetrix, Illumina [~ 4800000] (imputed)	N
800	chr22	28207629	28207630	rs11703195	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	22q12.1	NR	rs11703195-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
800	chr22	28252550	28252551	rs200505470	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs200505470-C	0.02439	3E-9	(RPS26)	0.09588	NR unit increase	Illumina [1671387] (imputed)	N
800	chr22	28279593	28279594	rs926467	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	22q12.1		rs926467-?	NR	2E-8				Affymetrix [NR] (imputed)	N
800	chr22	28286935	28286936	rs138470584	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs138470584-T	0.01045	2E-10	(ALDH16A1)	0.03697	NR unit increase	Illumina [1671387] (imputed)	N
800	chr22	28286935	28286936	rs138470584	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.1	NR	rs138470584-T	0.01045	1E-8	(FKBP4)	0.04525	NR unit increase	Illumina [1671387] (imputed)	N
800	chr22	28289377	28289378	rs9625355	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	22q12.1		rs9625355-?	NR	3E-8				Affymetrix [NR] (imputed)	N
801	chr22	28314611	28314612	rs62235635	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	22q12.1	NR	rs62235635-?	NR	1E-6		1.6262683	[1.34-1.98]	Affymetrix, Illumina [~ 10400000] (imputed)	N
801	chr22	28314611	28314612	rs62235635	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs62235635-A	0.0065	1E-27	(EA)	0.4659	[0.38-0.55] unit increase	Illumina [~ 11800000] (imputed)	N
801	chr22	28315256	28315257	rs2235574	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PITPNB	rs2235574-?	NR	2E-11	(female)	1.68086	[NR] unit decrease	Affymetrix [NR] (imputed)	N
801	chr22	28316591	28316591	rs75321888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q12.1		rs75321888-TG	NR	2E-11		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
801	chr22	28324378	28324379	rs5762408	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TTC28-AS1	rs5762408-?	NR	2E-11	(female)	1.68032	[NR] unit decrease	Affymetrix [NR] (imputed)	N
801	chr22	28356599	28356600	rs118173451	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs118173451-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
801	chr22	28356599	28356600	rs118173451	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.1		rs118173451-?	NR	2E-29				NR [~ 8900000] (imputed)	N
801	chr22	28361242	28361243	rs184151713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs184151713-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
801	chr22	28368472	28368473	rs2038158	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.1	TTC28-AS1	rs2038158-T	0.521227	2E-9		0.0113744	[0.0076-0.0151] unit increase	NR [13737936] (imputed)	N
801	chr22	28374942	28374943	rs78554043	29117387	Conti DV	2017-08-01	J Natl Cancer Inst	Two Novel Susceptibility Loci for Prostate Cancer in Men of African Ancestry.	Prostate cancer	5,454 African American cases, 474 West African cases, 4,274 African American and African ancestry cases, 6,328 African American controls, 458 West African controls, 4,024 African American and African ancestry controls	NA	22q12.1	CHEK2	rs78554043-C	0.013	8E-10		1.62	[1.39-1.89]	Affymetrix, Illumina [17013228] (imputed)	N
801	chr22	28378383	28378384	rs41278845	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q12.1	TTC28	rs41278845-C		3E-8		0.029	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
801	chr22	28378471	28378472	rs5762430	21552555	Wang K	2011-04-28	PLoS One	A genome-wide association study on obesity and obesity-related traits.	Obesity	520 European ancestry cases, 540 European ancestry controls	1,196 European ancestry individuals	22q12.1	PITPNB	rs5762430-?	NR	7E-7	(HIP)			Illumina [~ 550000]	N
801	chr22	28381807	28381808	rs183017604	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	22q12.1	TTC28-AS1, TTC28	rs183017604-T	0.002	3E-6		0.4289	[0.25-0.61] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
801	chr22	28392728	28392729	rs554709872	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on lymphocyte	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q12.1		rs554709872-A	0.03704	2E-8		0.3847	[0.25-0.52] unit decrease	Illumina [18030777] (imputed)	N
801	chr22	28392728	28392729	rs554709872	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on T cell	3,113 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q12.1		rs554709872-A	0.03704	9E-9		0.4024	[0.27-0.54] unit decrease	Illumina [18030777] (imputed)	N
801	chr22	28433234	28433235	rs34564977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs34564977-A	0.237027	1E-11				Affymetrix, Illumina [21126107] (imputed)	N
802	chr22	28455083	28455084	rs116845987	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.1		rs116845987-?	NR	1E-9				NR [~ 8900000] (imputed)	N
802	chr22	28464849	28464850	rs143459581	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs143459581-T	0.01	2E-6		0.52	[0.25-0.79]	Illumina [8468885] (imputed)	N
802	chr22	28540491	28540492	rs9608667	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.1	NR	rs9608667-?	NR	3E-6		0.0081765	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
802	chr22	28552697	28552698	rs62237573	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	22q12.1		rs62237573-T	NR	8E-9		1.3493456	NR	Affymetrix [7846216] (imputed)	N
802	chr22	28552697	28552698	rs62237573	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs62237573-T	0.0092	7E-36	(EA)	0.4256	[0.36-0.49] unit increase	Illumina [~ 11800000] (imputed)	N
802	chr22	28554372	28554373	rs4820782	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q12.1		rs4820782-T	0.3	1E-13		7.42	z score increase	Affymetrix [9061022] (imputed)	N
802	chr22	28557889	28557889	rs145158867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q12.1	NR	rs145158867-I	0.753851	4E-12		0.016894	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
802	chr22	28560147	28560148	rs10212007	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	22q12.1	NR	rs10212007-G	0.09037700000000004	3E-8		0.01963	[0.013-0.026] unit increase	Affymetrix [16583148] (imputed)	N
802	chr22	28564278	28564279	rs552308765	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	22q12.1	NA	rs552308765-T		2E-9		0.0178257	[0.012-0.024] unit increase	Illumina [13288253] (imputed)	N
803	chr22	28593103	28593104	rs143687692	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TTC28	rs143687692-?	NR	3E-11	(female)	1.61717	[NR] unit decrease	Affymetrix [NR] (imputed)	N
803	chr22	28624468	28624469	rs185689513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.1		rs185689513-?	NR	2E-8				NR [~ 8900000] (imputed)	N
803	chr22	28625684	28625685	rs9625434	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs9625434-C	0.03	3E-6		0.8	[0.7-0.9]	Illumina [8468885] (imputed)	N
803	chr22	28628208	28628209	rs5762532	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	22q12.1	TTC28	rs5762532-T	0.5899	4E-9		0.9811465	[NR]	Illumina [12493444] (imputed)	N
803	chr22	28633570	28633571	rs5762534	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	22q12.1	NR	rs5762534-T	0.8222	6E-6	(japanese)	0.155	[0.088-0.222] year decrease	Illumina [at least 532488] (imputed)	N
803	chr22	28633570	28633571	rs5762534	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional vitamin use interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	22q12.1	TTC28	rs5762534-?		9E-6		1.9	[1.43-2.51]	Illumina [341191]	N
803	chr22	28633570	28633571	rs5762534	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	22q12.1	CHEK2	rs5762534-T	0.84	6E-9		0.16	[0.1-0.22] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
803	chr22	28634670	28634671	rs17409164	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	22q12.1	NR	rs17409164-?	NR	2E-6		0.09655716	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
803	chr22	28638510	28638511	rs134186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q12.1		rs134186-?	NR	1E-7				NR [~ 8900000] (imputed)	N
804	chr22	28709057	28709058	rs143032062	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	22q12.1	TTC28	rs143032062-T	0.98	1E-17		0.03	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
804	chr22	28729766	28729767	rs134489	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	22q12.1	TTC28	rs134489-A	0.73	2E-8		5.6	z-score increase	Affymetrix [4314223] (imputed)	N
804	chr22	28730174	28730175	rs134490	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q12.1	TTC28	rs134490-T	NR	1E-7		1.0975	NR	Affymetrix, Illumina [8278136] (imputed)	N
804	chr22	28739114	28739115	rs62237615	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	22q12.1	NR	rs62237615-?	NR	4E-6		1.3701949	[1.20-1.57]	Affymetrix, Illumina [~ 10400000] (imputed)	N
804	chr22	28739114	28739115	rs62237615	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs62237615-G	0.0082	4E-33	(EA)	0.4404	[0.37-0.51] unit increase	Illumina [~ 11800000] (imputed)	N
804	chr22	28739517	28739517	rs35941888	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	22q12.1		rs35941888-?	NR	5E-6	(lmp)	1.66		Illumina [11595112] (imputed)	N
804	chr22	28746632	28746633	rs9625454	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs9625454-T	0.03	2E-6		0.79	[0.69-0.89]	Illumina [8468885] (imputed)	N
804	chr22	28748829	28748830	rs76450219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q12.1		rs76450219-A	NR	5E-22		0.0707	[0.056-0.085] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
804	chr22	28756580	28756581	rs738199	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.1	NR	rs738199-?	NR	4E-6		0.0080527	[0.0046-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Illnesses of mother: Breast cancer (UKB data field 20110_5)	34,581 European ancestry cases, 382,951 European ancestry controls	NA	22q12.1		rs62237617-T	0.001819	2E-10		0.62	[0.43-0.81] unit increase	NR [11842647] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	ICD10 C50.9: Malignant neoplasm of breast of unspecified site	6,087 European ancestry cases, 450,261 European ancestry controls	NA	22q12.1		rs62237617-T	0.00185	1E-10		1.59	[1.1-2.08] unit increase	NR [11842647] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer code, self-reported: breast cancer (UKB data field 20001_1002)	10,152 European ancestry cases, 446,124 European ancestry controls	NA	22q12.1		rs62237617-T	0.001824	1E-16		1.62	[1.24-2] unit increase	NR [11842647] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Cancer (UKB data field 2453)	35,762 European ancestry cases, 418,974 European ancestry controls	NA	22q12.1		rs62237617-T	0.001788	9E-13		0.69	[0.5-0.88] unit increase	NR [11842647] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Behaviour of cancer tumour: malignant, primary site, PHESANT recoding (UKB data field 40012_3)	60,858 European ancestry cases, 395,490 European ancestry controls	NA	22q12.1		rs62237617-T	0.001764	2E-12		0.53	[0.38-0.68] unit increase	NR [11842647] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q12.1		rs62237617-T	NR	2E-13		0.1786	[0.13-0.23] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	22q12.1		rs62237617-T	NR	6E-9		0.711	[0.47-0.95] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Ovarian cyst	10,847 European ancestry cases, 207,622 European ancestry controls, 2,896 East Asian ancestry cases, 79,865 East Asian ancestry controls	NA	22q12.1		rs62237617-T	NR	2E-8		0.5578	[0.36-0.75] unit increase	Affymetrix, Illumina [25752875] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q12.1		rs62237617-T	NR	2E-8		0.136	[0.088-0.184] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
804	chr22	28761147	28761148	rs62237617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	22q12.1		rs62237617-T	NR	6E-36		1.3134	[1.11-1.52] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.1	TTC28	rs62237617-T	0.00282000000000004	8E-17		0.19792207	[0.15-0.24] unit increase	Affymetrix [93095623] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.1	TTC28	rs62237617-T	0.00285800000000003	1E-12		0.16360368	[0.12-0.21] unit increase	Affymetrix [93095623] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs62237617-T	0.00299654	2E-23				Affymetrix, Illumina [24649327] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q12.1	NR	rs62237617-T	0.003036	3E-26		0.207721	[0.17-0.25] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs62237617-C	0.997159	7E-10				Affymetrix, Illumina [17210439] (imputed)	N
804	chr22	28761147	28761148	rs62237617	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	22q12.1	NR	rs62237617-?		8E-16		2.86	[NR]	NR [41502298] (imputed)	N
804	chr22	28761147	28761148	rs62237617	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor positive breast cancer	4,116 European ancestry cases, 60,055 European ancestry controls	NA	22q12.1	NR	rs62237617-?	NR	2E-6		1.6840287	[1.36-2.09]	Affymetrix, Illumina [~ 10400000] (imputed)	N
804	chr22	28761147	28761148	rs62237617	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	22q12.1	NR	rs62237617-T	0.011	7E-7		0.74	[0.45-1.03] unit increase	Illumina [~ 8400000] (imputed)	N
804	chr22	28761147	28761148	rs62237617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	22q12.1	TTC28	rs62237617-T	0.0029	3E-11		0.2473668	[0.17-0.32] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr22	28761147	28761148	rs62237617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q12.1	TTC28	rs62237617-T	0.0029	3E-9		0.222864	[0.15-0.3] unit increase	Affymetrix [~ 2500000] (imputed)	N
804	chr22	28807624	28807625	rs134551	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q12.1	TTC28	rs134551-C	0.664562	3E-8		0.0117186	[0.0076-0.0159] unit increase	Affymetrix [NR] (imputed)	N
805	chr22	28848277	28848278	rs695459	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q12.1		rs695459-T	0.3886	7E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
805	chr22	28848277	28848278	rs695459	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q12.1	TTC28	rs695459-C	0.6093999999999999	1E-8		1.0222439		Affymetrix [11880941] (imputed)	N
805	chr22	28871569	28871570	rs9613630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	22q12.1		rs9613630-?	NR	6E-8				NR [~ 8900000] (imputed)	N
805	chr22	28888938	28888939	rs9625483	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs9625483-A	0.03	2E-6		0.79	[0.69-0.89]	Illumina [8468885] (imputed)	N
805	chr22	28888938	28888939	rs9625483	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q12.1	NR	rs9625483-A	NR	7E-10		1.151	[1.10-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
805	chr22	28888938	28888939	rs9625483	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	22q12.1	TTC28	rs9625483-A	0.03	2E-8		1.14	[1.09-1.20]	Illumina [20370935] (imputed)	N
805	chr22	28899747	28899748	rs695267	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.1	NR	rs695267-?	NR	3E-6		0.0081812	[0.0048-0.0116] unit decrease	Affymetrix [805426] (imputed)	N
805	chr22	28921346	28921347	rs9608690	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	22q12.1	TTC28	rs9608690-G	0.9318	6E-10		0.3711	[0.25-0.49] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
805	chr22	28923316	28923317	rs2144922	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q12.1		rs2144922-G	0.123	1E-13				Affymetrix [10369434] (imputed)	N
805	chr22	28925541	28925542	rs5752754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.1	TTC28	rs5752754-A	0.877767	6E-25		0.035027824	[0.028-0.042] unit increase	Affymetrix [93095623] (imputed)	N
805	chr22	28928857	28928858	rs149936356	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs149936356-C	0.0246	1E-18	(EA)	0.176	[0.14-0.22] unit increase	Illumina [~ 11800000] (imputed)	N
805	chr22	28934312	28934313	rs6005807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q12.1	TTC28	rs6005807-C	0.9074492	1E-9		0.02336805	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
805	chr22	28934312	28934313	rs6005807	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	22q12.1	NR	rs6005807-C	0.898635	5E-9		1.1651025	[1.10668774857942-1.22660041924]	Illumina [11595112] (imputed)	N
805	chr22	28934312	28934313	rs6005807	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	22q12.1	NR	rs6005807-C	0.898635	3E-7		1.1211612	[1.07314763387262-1.17132308995474]	Illumina [11595112] (imputed)	N
805	chr22	28934312	28934313	rs6005807	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	22q12.1	NR	rs6005807-C	0.898635	1E-8		1.1650093	[1.10493126343643-1.22835376686122]	Illumina [11595112] (imputed)	N
805	chr22	28934312	28934313	rs6005807	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	22q12.1	NR	rs6005807-C	0.899	9E-6		1.1	[1.05-1.15]	Illumina [11595112] (imputed)	N
805	chr22	28934312	28934313	rs6005807	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	22q12.1	TTC28	rs6005807-T	0.9	6E-6		0.2396	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
805	chr22	28934312	28934313	rs6005807	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal T-tau levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	22q12.1	TTC28	rs6005807-T	0.9	1E-6		0.1975	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
805	chr22	28934312	28934313	rs6005807	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebrospinal P-tau181p levels	up to 189 European and other ancestry early mild cognitive impairment cases,  up to 251 European and other ancestry late mild cognitive impairment cases,  up to 121 European and other ancestry Alzheimer's disease cases,  up to 215 European and other ancestry healthy controls	up to 3 European and other ancestry significant memory concern cases,  up to 57 European and other ancestry early mild cognitive impairment cases,   up to 61 European and other ancestry late mild cognitive impairment cases,  up to 62 European and other ancestry Alzheimer's disease cases,  up to 21 European and other ancestry healthy controls	22q12.1	TTC28	rs6005807-T	0.9	3E-7		0.213	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
805	chr22	28942262	28942263	rs557090273	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cataracts	12,981 Japanese ancestry female cases, 90,125 Japanese ancestry female controls	NA	22q12.1		rs557090273-A	0.002271656	5E-8		2.70581	[1.89397968-3.865621517]	Illumina [8919992] (imputed)	N
805	chr22	28947401	28947402	rs9613645	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	22q12.1	NR	rs9613645-?	NR	8E-8		0.10405758	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
805	chr22	28947630	28947631	rs5762683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	22q12.1		rs5762683-?	NR	8E-8				NR [~ 8900000] (imputed)	N
806	chr22	29008887	29008888	rs186184919	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs186184919-T	0.01	1E-13		0.44	[0.22-0.66]	Illumina [8468885] (imputed)	N
806	chr22	29018815	29018815	rs577442473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.1	TTC28	rs577442473-AT	0.094662	3E-13		0.028709836	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
806	chr22	29032706	29032710	rs201891590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	22q12.1		rs201891590-A	NR	9E-10		0.026	[0.018-0.034] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
806	chr22	29034963	29034964	rs5752764	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	22q12.1		rs5752764-C	0.371	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
806	chr22	29052117	29052118	rs530007800	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.1	TTC28	rs530007800-A	0.00259200000000004	7E-9		0.12844813	[0.085-0.172] unit increase	Affymetrix [93095623] (imputed)	N
806	chr22	29074986	29074987	rs9613664	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	22q12.1	NR	rs9613664-?	NR	1E-6		0.0954383	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
806	chr22	29078704	29078705	rs75174485	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	22q12.1		rs75174485-G	NR	1E-7		1.3468013	NR	Affymetrix [7846216] (imputed)	N
806	chr22	29080730	29080731	rs62235681	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Malignant neoplasm of female breast (PheCode 174.11)	10,971 European ancestry cases, 445,377 European ancestry controls	NA	22q12.1		rs62235681-G	0.005956	2E-14		0.74	[0.55-0.93] unit increase	NR [11842647] (imputed)	N
806	chr22	29080730	29080731	rs62235681	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs62235681-G	0.0085	2E-37	(EA)	0.4558	[0.39-0.53] unit increase	Illumina [~ 11800000] (imputed)	N
806	chr22	29088122	29088123	rs5762746	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q12.1	NR	rs5762746-C	0.633	1E-10		0.00723818	[0.005-0.0094] unit increase	NR [9732723] (imputed)	N
806	chr22	29091036	29091037	rs5762749	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	22q12.1	CHEK2	rs5762749-G		9E-9		0.98	[NR]	Affymetrix [up to 79000000] (imputed)	N
806	chr22	29091146	29091147	rs17886163	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q12.1	NR	rs17886163-C	NR	1E-9		1.594	[1.37-1.85]	Affymetrix, Illumina [29235255] (imputed)	N
806	chr22	29091146	29091147	rs17886163	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	10,368 African ancestry cases, 10,986 African ancestry controls	NA	22q12.1	NR	rs17886163-C	0.015	1E-9		1.594	[1.37-1.85]	Affymetrix, Illumina [18877980] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	White blood cell count	444,734 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	2E-30		0.237554	[0.2-0.28] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	6E-10		0.125902	[0.086-0.166] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	1E-10		0.127384	[0.088-0.166] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Neutrophil count	443,782 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	4E-16		0.169695	[0.13-0.21] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	3E-22		0.1678	[0.13-0.2] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	7E-13		0.143139	[0.1-0.18] unit decrease	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Lymphocyte counts	443,762 European ancestry individuals	NA	22q12.1		rs555607708-?	NR	7E-25		0.211944	[0.17-0.25] unit increase	NR [9800000] (imputed)	N
806	chr22	29091856	29091857	rs555607708	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q12.1	NR	rs555607708-A	NR	1E-8		1.477	[1.29-1.69]	Affymetrix, Illumina [29235255] (imputed)	N
806	chr22	29096692	29096693	rs7287609	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	22q12.1	CHEK2	rs7287609-C	0.99	8E-15		0.03	[0.022-0.038] unit increase	Affymetrix [at least 8002429] (imputed)	N
807	chr22	29098375	29098376	rs182075939	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	22q12.1	TTC28	rs182075939-G	0.0441	2E-16		1.69	[1.49-1.91]	NR [24154061] (imputed)	N
807	chr22	29098375	29098376	rs182075939	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age and BMI)	482 European ancestry cases, 91,631 European ancestry controls	2,137 European ancestry cases, 68,690 European ancestry controls	22q12.1	TTC28	rs182075939-A	0.0441	5E-14		1.74	[1.5-2.01]	NR [24481103] (imputed)	N
807	chr22	29100710	29100711	rs1547014	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	22q12.1	CHEK2	rs1547014-T	NR	5E-20		0.013	[0.011-0.015] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
807	chr22	29100710	29100711	rs1547014	20548946	Ramdas WD	2010-06-10	PLoS Genet	A genome-wide association study of optic disc parameters.	Vertical cup-disc ratio	7,360 European ancestry individuals	4,455 European ancestry individuals	22q12.1	CHEK2	rs1547014-T	0.29	1E-8		0.01	[0.007-0.015] mm2 decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
807	chr22	29100976	29100977	rs5762752	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	22q12.1	CHEK2	rs5762752-C	0.36	8E-33		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
807	chr22	29100976	29100977	rs5762752	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	22q12.1	CHEK2	rs5762752-C		2E-9	(EA)	0.028	[0.018-0.038] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29100976	29100977	rs5762752	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	22q12.1	CHEK2	rs5762752-C		1E-8		0.023	[0.015-0.031] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29101356	29101357	rs6005840	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q12.1		rs6005840-G	NR	1E-21		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
807	chr22	29101356	29101357	rs6005840	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q12.1	NR	rs6005840-A	0.326327	3E-42		0.011982	[0.01-0.014] unit increase	Affymetrix [16582909] (imputed)	N
807	chr22	29101356	29101357	rs6005840	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q12.1	NR	rs6005840-A	0.327301	2E-40		0.0162981	[0.014-0.019] unit increase	Affymetrix [16582621] (imputed)	N
807	chr22	29101356	29101357	rs6005840	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q12.1	NR	rs6005840-A	0.326327	4E-37		0.0128356	[0.011-0.015] unit increase	Affymetrix [16582965] (imputed)	N
807	chr22	29101356	29101357	rs6005840	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q12.1	NR	rs6005840-A	0.327301	4E-39		0.0168747	[0.014-0.019] unit increase	Affymetrix [16582614] (imputed)	N
807	chr22	29101356	29101357	rs6005840	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	22q12.1	CHEK2	rs6005840-A	0.32	2E-38		0.01	[0.0081-0.0119] unit decrease	Affymetrix [at least 8002429] (imputed)	N
807	chr22	29103216	29103217	rs743185	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.1	CHEK2	rs743185-A	0.149153	2E-10		0.020230686	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
807	chr22	29103597	29103598	rs186430430	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs186430430-C	0.00263547	1E-10				Affymetrix, Illumina [23114412] (imputed)	N
807	chr22	29103597	29103598	rs186430430	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q12.1	CHEK2	rs186430430-C	0.0027	6E-9		0.2310512	[0.15-0.31] unit increase	Affymetrix [~ 2500000] (imputed)	N
807	chr22	29105414	29105415	rs5752773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q12.1		rs5752773-C	NR	1E-21		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
807	chr22	29105414	29105415	rs5752773	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q12.1	NR	rs5752773-G	0.326595	2E-14		0.0108792	[0.0082-0.0136] unit increase	Affymetrix [16578495] (imputed)	N
807	chr22	29105414	29105415	rs5752773	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	22q12.1	CHEK2	rs5752773-G	NR	5E-21	(EA)	0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29105414	29105415	rs5752773	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	22q12.1	CHEK2	rs5752773-G	NR	1E-20		0.012	[0.01-0.014] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29105609	29105610	rs5752774	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	22q12.1	CHEK2	rs5752774-T	NR	2E-11		1.098901	[1.08-1.14]	Affymetrix [at least 665500] (imputed)	N
807	chr22	29107194	29107195	rs5752775	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q12.1		rs5752775-?	NR	3E-8		0.00536096	[0.0035-0.0073] unit decrease	NR [NR]	N
807	chr22	29108228	29108229	rs5752776	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	22q12.1	CHEK2	rs5752776-?	NR	2E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [21347608] (imputed)	N
807	chr22	29108228	29108229	rs5752776	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	22q12.1	CHEK2	rs5752776-?	NR	1E-13		0.0039	[0.0029-0.0049] unit decrease	Affymetrix [21347608] (imputed)	N
807	chr22	29108228	29108229	rs5752776	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	22q12.1	CHEK2	rs5752776-A	0.325608	9E-25		0.00415996	[0.0033-0.005] unit decrease	Affymetrix [13995440] (imputed)	N
807	chr22	29108228	29108229	rs5752776	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	22q12.1	CHEK2	rs5752776-A	NR	3E-25		0.0807	unit decrease	Illumina [15409056] (imputed)	N
807	chr22	29108228	29108229	rs5752776	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	22q12.1	CHEK2	rs5752776-A	NR	9E-7		0.93342	[0.91-0.96]	Affymetrix, Illumina [14822926] (imputed)	N
807	chr22	29108228	29108229	rs5752776	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q12.1	CHEK2	rs5752776-G	0.67	7E-18		8.62	z-score increase	Affymetrix [4312306] (imputed)	N
807	chr22	29108228	29108229	rs5752776	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	22q12.1	CHEK2	rs5752776-A	0.33	2E-54		0.01	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
807	chr22	29108228	29108229	rs5752776	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	22q12.1	CHEK2	rs5752776-A	0.3	2E-9		0.026	[0.018-0.034] mm2 decrease	Affymetrix, Illumina [11764957] (imputed)	N
807	chr22	29108443	29108444	rs6005843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.1	CHEK2	rs6005843-C	0.047843	4E-9		0.03119858	[0.021-0.042] unit increase	Affymetrix [93095623] (imputed)	N
807	chr22	29110758	29110759	rs2078555	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	22q12.1	CHEK2	rs2078555-G	0.302	2E-19		0.022	[0.018-0.026] mm2 decrease	Affymetrix, Illumina [11830838] (imputed)	N
807	chr22	29115065	29115066	rs4822983	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q12.1	CHEK2	rs4822983-C	0.674719	8E-29		0.00602465	[0.005-0.0071] unit increase	Affymetrix [13995440] (imputed)	N
807	chr22	29115065	29115066	rs4822983	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q12.1	CHEK2	rs4822983-C	0.674696	7E-19		0.00218337	[0.0017-0.0027] unit increase	Affymetrix [13995440] (imputed)	N
807	chr22	29115065	29115066	rs4822983	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	22q12.1	CHEK2	rs4822983-T	0.296	5E-25		0.015	[0.013-0.017] unit decrease	Affymetrix, Illumina [11901698] (imputed)	N
807	chr22	29115065	29115066	rs4822983	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	22q12.1	CHEK2	rs4822983-T	0.20	2E-22		1.27	[1.21-1.34]	NR [NR]	N
807	chr22	29121086	29121087	rs17879961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	22q12.1		rs17879961-G	NR	7E-11		0.3007	[0.21-0.39] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
807	chr22	29121086	29121087	rs17879961	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs17879961-G	0.01	1E-15		0.43	[0.21-0.65]	Illumina [8468885] (imputed)	N
807	chr22	29121086	29121087	rs17879961	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	22q12.1	CHEK2, HSCB	rs17879961-G	0.0221	1E-7		2.23	1.66-3	Affymetrix [6845584] (imputed)	N
807	chr22	29121086	29121087	rs17879961	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	CHEK2	rs17879961-G	0.005	1E-8	(EA)	1.26	[1.11-1.42] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
807	chr22	29121086	29121087	rs17879961	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	22q12.1	NR	rs17879961-G	0.0049	8E-7		1.37	[1.21-1.55]	Affymetrix, Illumina [~ 14000000] (imputed)	N
807	chr22	29121086	29121087	rs17879961	24880342	Wang Y	2014-06-01	Nat Genet	Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.	Lung cancer	3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls	3,589 European ancestry adenocarcinoma cases, 3,202 European ancestry squamous cell carcinoma cases, 3,455 cases, up to 38,295 controls	22q12.1	CHEK2	rs17879961-A	0.9975	3E-11	(All lung cancer)	1.67	[1.43-1.92]	Illumina [8900000] (imputed)	N
807	chr22	29121086	29121087	rs17879961	24880342	Wang Y	2014-06-01	Nat Genet	Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.	Lung cancer	3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls	3,589 European ancestry adenocarcinoma cases, 3,202 European ancestry squamous cell carcinoma cases, 3,455 cases, up to 38,295 controls	22q12.1	CHEK2	rs17879961-A	0.9975	1E-13	(Squamous cell carcinoma)	2.63	[2.04-3.33]	Illumina [8900000] (imputed)	N
807	chr22	29127223	29127224	rs8184986	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	22q12.1	CHEK2	rs8184986-?	NR	2E-7				NR [~ 24000000] (imputed)	N
807	chr22	29127223	29127224	rs8184986	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q12.1	NR	rs8184986-A	0.865764	2E-8		0.023426	[0.015-0.032] unit increase	Affymetrix [16580851] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	4E-9		0.0154	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	5E-25		0.0282	[0.023-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	1E-15		0.0207	[0.016-0.026] unit increase	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	4E-18		0.0226	[0.018-0.028] unit increase	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	3E-9		0.0155	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	6E-12		0.0179	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q12.1	NR	rs738722-C	NR	8E-17		0.0217	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	22q12.1	CHEK2	rs738722-C	0.7	3E-7		1.098901	NR	Affymetrix [at least 8002429] (imputed)	N
807	chr22	29130011	29130012	rs738722	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	22q12.1	CHEK2	rs738722-T	NR	8E-22		0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	22q12.1	CHEK2	rs738722-T	NR	1E-18	(EA)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
807	chr22	29130011	29130012	rs738722	20729852	Abnet CC	2010-08-22	Nat Genet	A shared susceptibility locus in PLCE1 at 10q23 for gastric adenocarcinoma and esophageal squamous cell carcinoma.	Esophageal cancer and gastric cancer	1,625 Chinese ancestry gastric cancer cases, 1,898 Chinese ancestry ESCC cases, 2,100 Chinese ancestry controls	NA	22q12.1	HSCB, CHEK2	rs738722-T	0.25	1E-8	(ESCC)	1.3	[1.19-1.43]	Illumina [551152]	N
807	chr22	29130299	29130300	rs1033667	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	22q12.1	NR	rs1033667-T	0.30027899999999996	9E-13		0.0234566	[0.017-0.03] unit increase	Affymetrix [16577313] (imputed)	N
807	chr22	29130299	29130300	rs1033667	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	22q12.1	NR	rs1033667-T	0.29967900000000003	3E-12		0.00920782	[0.0065-0.0119] unit increase	Affymetrix [16585854] (imputed)	N
807	chr22	29130299	29130300	rs1033667	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	22q12.1	NR	rs1033667-T	0.29967900000000003	2E-12		0.010876	[0.0078-0.0139] unit increase	Affymetrix [16585866] (imputed)	N
807	chr22	29130299	29130300	rs1033667	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	22q12.1	CHEK2	rs1033667-T	0.28	4E-16	(EA)	0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
807	chr22	29130299	29130300	rs1033667	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	22q12.1	CHEK2	rs1033667-T	0.28	1E-17		0.023	[0.017-0.029] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
807	chr22	29134558	29134559	rs9608698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.1	CHEK2	rs9608698-C	0.549064	1E-9		0.01383104	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29134558	29134559	rs9608698	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.1	CHEK2	rs9608698-C	NR	3E-9		0.0240875	[0.016-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
807	chr22	29135120	29135121	rs9613668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.1	CHEK2	rs9613668-C	0.57227	8E-34		0.027214427	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29135120	29135121	rs9613668	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.1	CHEK2	rs9613668-G	0.572285	9E-16		0.01775	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
807	chr22	29135120	29135121	rs9613668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs9613668-G	0.438092	3E-39				Affymetrix, Illumina [22063850] (imputed)	N
807	chr22	29135120	29135121	rs9613668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q12.1	NR	rs9613668-G	0.430549	1E-40		0.025452	[0.022-0.029] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
807	chr22	29135120	29135121	rs9613668	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q12.1	NR	rs9613668-C	0.570995	5E-19		0.018032	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
807	chr22	29135120	29135121	rs9613668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.1		rs9613668-?	NR	3E-37				NR [~ 8900000] (imputed)	N
807	chr22	29142976	29142977	rs5762768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs5762768-G	0.512205	1E-18				Affymetrix, Illumina [21126107] (imputed)	N
807	chr22	29146001	29146002	rs6005857	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs6005857-?	NR	4E-9		0.0284315	[0.018-0.038] unit increase	Affymetrix [20259828] (imputed)	N
807	chr22	29151149	29151150	rs34887403	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	22q12.1	HSCB	rs34887403-G		3E-7	(EA)	0.435	unit decrease	Affymetrix [at least 2696785] (imputed)	N
807	chr22	29151149	29151150	rs34887403	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	22q12.1	HSCB	rs34887403-G		3E-7		0.397	unit decrease	Affymetrix [at least 2696785] (imputed)	N
807	chr22	29151149	29151150	rs34887403	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	22q12.1	HSCB	rs34887403-G		3E-8		0.304	unit decrease	Affymetrix [at least 2696785] (imputed)	N
807	chr22	29151149	29151150	rs34887403	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	22q12.1	HSCB	rs34887403-G		4E-6		0.233	unit decrease	Affymetrix [at least 2696785] (imputed)	N
807	chr22	29151149	29151150	rs34887403	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	22q12.1	HSCB	rs34887403-G		1E-6	(EA)	0.268	unit decrease	Affymetrix [at least 2696785] (imputed)	N
807	chr22	29153758	29153759	rs5752792	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q12.1	NR	rs5752792-C	NR	3E-8		0.022	unit increase	Affymetrix [at least 7091467] (imputed)	N
807	chr22	29154454	29154455	rs5997397	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.1	HSCB	rs5997397-G	0.4277	8E-18		0.03068921	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
807	chr22	29156447	29156448	rs6005863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q12.1	HSCB	rs6005863-G	0.403552	3E-9		0.013629592	[0.0091-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
807	chr22	29160313	29160314	rs5752793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.1	HSCB	rs5752793-G	NR	2E-10		0.0203442	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
807	chr22	29160313	29160314	rs5752793	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.1	HSCB	rs5752793-G	NR	1E-10		0.0204926	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
807	chr22	29160313	29160314	rs5752793	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	22q12.1	HSCB, CCDC117	rs5752793-?	NR	7E-7		0.065	[0.039-0.090] unit increase	Illumina [12039487] (imputed)	N
807	chr22	29160436	29160437	rs9625564	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs9625564-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
807	chr22	29161003	29161004	rs116847786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q12.1		rs116847786-?	NR	3E-9				NR [~ 8900000] (imputed)	N
807	chr22	29161006	29161007	rs4820792	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	22q12.1	MTFP1, LOC646513, SEC14L2, SDC4P, CHEK2	rs4820792-T	.180	4E-7		0.105	[0.065-.146] cup size increase	Illumina [7422970] (imputed)	N
807	chr22	29181165	29181165	rs71316863	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs71316863-?	NR	7E-22		0.0437333	[0.035-0.053] unit increase	Affymetrix [20259828] (imputed)	N
807	chr22	29192669	29192670	rs2239815	25129146	Wu C	2014-08-17	Nat Genet	Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.	Esophageal squamous cell carcinoma	5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls	9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry  controls	22q12.1	CHEK2, CCDC117, XBP1	rs2239815-T	0.387	4E-7		1.16	[1.1-1.23]	Affymetrix, Illumina [7556215] (imputed)	N
807	chr22	29192669	29192670	rs2239815	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	22q12.1	XBP1	rs2239815-T	0.37	4E-15		1.18	[1.13-1.23]	NR [NR]	N
807	chr22	29203313	29203314	rs5762813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q12.1	CTA-292E10.6	rs5762813-T	0.185222	2E-12		0.02020038	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.1	CTA-292E10.6	rs5762813-T	0.185203	2E-9		0.017098559	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.1	CTA-292E10.6	rs5762813-T	0.185216	9E-25		0.029186051	[0.024-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q12.1	NR	rs5762813-T	0.185132	1E-11		0.016208	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q12.1	NR	rs5762813-T	0.185095	2E-26		0.025213	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs5762813-T	0.255644	4E-23				Affymetrix, Illumina [24558453] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q12.1	NR	rs5762813-T	0.185148	4E-23		0.02351	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
807	chr22	29203313	29203314	rs5762813	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q12.1	CCDC117, XBP1, ZintergenicF3	rs5762813-T		3E-19		0.026	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
807	chr22	29203313	29203314	rs5762813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q12.1		rs5762813-?	NR	1E-12				NR [~ 8900000] (imputed)	N
807	chr22	29203313	29203314	rs5762813	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q12.1	CTA-292E10.6	rs5762813-T	0.184	5E-11		0.03005343	[0.021-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
807	chr22	29203313	29203314	rs5762813	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q12.1	CTA-292E10.6	rs5762813-T	0.184	1E-9		0.02777911	[0.019-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
807	chr22	29213053	29213054	rs133441	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs133441-?	NR	4E-16		0.019845	[0.015-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
807	chr22	29213053	29213054	rs133441	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.1	XBP1	rs133441-A	0.760172	7E-9		0.0241141	[0.016-0.032] unit decrease	NR [17166351] (imputed)	N
807	chr22	29216721	29216722	rs34923414	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.1	CTA-292E10.6	rs34923414-T	0.502959	1E-9		0.013486192	[0.0091-0.0178] unit decrease	Affymetrix [93095623] (imputed)	N
807	chr22	29216721	29216722	rs34923414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs34923414-T	0.521691	3E-14				Affymetrix, Illumina [20825802] (imputed)	N
807	chr22	29216721	29216722	rs34923414	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q12.1	NR	rs34923414-T	0.505035	2E-17		0.016519	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
807	chr22	29216721	29216722	rs34923414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.1		rs34923414-?	NR	4E-14				NR [~ 8900000] (imputed)	N
807	chr22	29222262	29222263	rs5997410	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	22q12.1	XBP1, ZNRF3	rs5997410-G	0.15	2E-8		5.63	z-score increase	Affymetrix [4311822] (imputed)	N
808	chr22	29250504	29250505	rs5762861	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	22q12.1		rs5762861-G	0.573955	5E-8		0.0188849	[0.012-0.026] unit increase	Illumina [13477767] (imputed)	N
808	chr22	29252450	29252451	rs73170666	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	22q12.1	Intergenic	rs73170666-?	NR	9E-6		1.2	[1.11-1.29]	Affymetrix, Illumina [39235000] (imputed)	N
808	chr22	29252731	29252732	rs5762862	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	22q12.1	NR	rs5762862-A	0.5731	1E-10	(East Asian)	0.424	[0.29-0.55] unit increase	Illumina [6200000] (imputed)	N
808	chr22	29252731	29252732	rs5762862	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	22q12.1	ZNRF3	rs5762862-A	0.5731	1E-11	(East Asian)	0.3129	[0.22-0.4] unit increase	Illumina [6200000] (imputed)	N
808	chr22	29252731	29252732	rs5762862	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	22q12.1	ZNRF3	rs5762862-A	0.5731	4E-11	(East Asian)	0.2724	[0.19-0.35] unit increase	Illumina [6200000] (imputed)	N
808	chr22	29252731	29252732	rs5762862	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs5762862-?	NR	2E-22		0.0234807	[0.018-0.029] unit increase	Affymetrix [20259828] (imputed)	N
808	chr22	29252731	29252732	rs5762862	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	22q12.1	XBP1, ZNRF3	rs5762862-?	NR	3E-8		0.02143	[0.014-0.029] unit increase novel	Illumina [6108953] (imputed)	N
808	chr22	29255569	29255570	rs73388841	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.1	ZNRF3	rs73388841-T	0.944106	1E-10		0.0269534	[0.019-0.035] unit increase	NR [13737936] (imputed)	N
808	chr22	29255569	29255570	rs73388841	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs73388841-?	NR	1E-27		0.0486055	[0.04-0.058] unit increase	Affymetrix [20259828] (imputed)	N
808	chr22	29256485	29256486	rs6005930	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.1		rs6005930-?	NR	1E-35				NR [~ 8900000] (imputed)	N
808	chr22	29256665	29256666	rs115770674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.1		rs115770674-?	NR	1E-10				NR [~ 8900000] (imputed)	N
808	chr22	29269691	29269692	rs8141529	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q12.1	intergenic	rs8141529-G	0.2609	5E-9		0.02394434	[0.016-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
808	chr22	29269738	29269739	rs542247589	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.1	ZNRF3	rs542247589-T	0.996622	3E-12		0.105464	[0.076-0.135] unit increase	NR [13737936] (imputed)	N
808	chr22	29272636	29272637	rs62235753	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs62235753-T	0.0171	3E-20	(EA)	0.2221	[0.17-0.27] unit increase	Illumina [~ 11800000] (imputed)	N
808	chr22	29274232	29274235	rs757625199	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs757625199-?	NR	1E-20		0.0265847	[0.021-0.032] unit increase	Affymetrix [20259828] (imputed)	N
808	chr22	29278250	29278251	rs77389267	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	22q12.1	ZNRF3	rs77389267-G	0.0061	7E-6		0.33	NR SD units decrease	Illumina [21568490] (imputed)	N
808	chr22	29286179	29286180	rs5762879	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q12.1	NR	rs5762879-T	0.173699	2E-10		0.015322	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
808	chr22	29286179	29286180	rs5762879	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs5762879-?	NR	1E-9		0.0151569	[0.0097-0.0206] unit increase	Affymetrix [20259828] (imputed)	N
808	chr22	29296223	29296224	rs140353819	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.1	NR	rs140353819-A	0.01	8E-12		0.49	[0.27-0.71]	Illumina [8468885] (imputed)	N
808	chr22	29300305	29300306	rs16986825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs16986825-T	0.21908	1E-27				Affymetrix, Illumina [24653286] (imputed)	N
808	chr22	29300305	29300306	rs16986825	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	22q12.1	ZNRF3	rs16986825-T	0.15	1E-8		1.15	[1.10 -1.20]	Illumina [11381182] (imputed)	N
808	chr22	29300305	29300306	rs16986825	25086665	Wolpin BM	2014-08-03	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.	Pancreatic cancer	1,582 European ancestry cases, 5,203 European ancestry controls	6,101 European ancestry cases, 9,194 European ancestry controls	22q12.1	SNORD125, RHBDD3, EWSR1, CHEK2, TTC28, HSCB, CCDC117, XBP1, ZNRF3, KREMEN1, ZNRF3-AS1, C22orf31, EMID1, GAS2L1, RASL10A, AP1B1, MIR3653	rs16986825-T	0.149	1E-8		1.18	[1.12-1.25]	Illumina [608202]	N
808	chr22	29303594	29303595	rs469989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs469989-G	NR	4E-10		0.020769	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
808	chr22	29303594	29303595	rs469989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs469989-G	NR	5E-9		0.018783	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
808	chr22	29310524	29310525	rs143012756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.1		rs143012756-?	NR	5E-9				NR [~ 8900000] (imputed)	N
808	chr22	29323915	29323916	rs540182926	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs540182926-?	NR	2E-19		0.162069	[0.13-0.2] unit increase	Affymetrix [20259828] (imputed)	N
808	chr22	29327346	29327347	rs71327329	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q12.1	ZNRF3	rs71327329-A	0.869576	2E-13		0.00248205	[0.0018-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
808	chr22	29333122	29333123	rs7290364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs7290364-T	NR	1E-13		0.0576074	[0.042-0.073] unit increase	Affymetrix [319769] (imputed)	N
808	chr22	29333122	29333123	rs7290364	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs7290364-T	NR	5E-13		0.0562521	[0.041-0.071] unit increase	Affymetrix [319769] (imputed)	N
808	chr22	29333122	29333123	rs7290364	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs7290364-?	NR	3E-21				Affymetrix [~ 8270000] (imputed)	N
808	chr22	29333860	29333861	rs7286026	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs7286026-G	NR	2E-10		0.0498072	[0.034-0.065] unit increase	Affymetrix [321169] (imputed)	N
808	chr22	29338655	29338656	rs28360615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q12.1		rs28360615-C	NR	5E-20		0.0183	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
808	chr22	29338655	29338656	rs28360615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q12.1		rs28360615-C	NR	2E-17		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
808	chr22	29338655	29338656	rs28360615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	22q12.1		rs28360615-?	NR	1E-28				NR [~ 8900000] (imputed)	N
808	chr22	29338655	29338656	rs28360615	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q12.1	NR	rs28360615-C	0.154496	8E-35		0.0531567	[0.045-0.062] unit increase	NR [19129689] (imputed)	N
808	chr22	29340914	29340914	rs371329738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs371329738-CAAAT	NR	2E-8		0.0205005	[0.013-0.028] unit increase	Affymetrix [321788] (imputed)	N
808	chr22	29348002	29348003	rs5752840	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Sphingomyelin(37:1)_[M+H]1+ levels	5,662 Pakistani ancestry individuals	NA	22q12.1		rs5752840-G	NR	4E-11		0.161	[0.11-0.21] unit decrease	Illumina [6720657] (imputed)	N
808	chr22	29350910	29350911	rs16986864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.1	ZNRF3	rs16986864-T	0.158712	3E-21		0.028728198	[0.023-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
808	chr22	29350910	29350911	rs16986864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.1	NR	rs16986864-T	0.228311	4E-13				Affymetrix, Illumina [24332387] (imputed)	N
809	chr22	29360449	29360450	rs34293193	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q12.1		rs34293193-A	NR	3E-12		0.0124	[0.0089-0.0159] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
809	chr22	29361158	29361159	rs2213645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q12.1		rs2213645-G	NR	7E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
809	chr22	29369397	29369398	rs5762925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	22q12.1		rs5762925-C	NR	4E-8		0.0421	[0.027-0.057] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
809	chr22	29369397	29369398	rs5762925	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q12.1	NR	rs5762925-C	0.3776	8E-12		0.0267	[0.019-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
809	chr22	29369397	29369398	rs5762925	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	22q12.1		rs5762925-C	0.514868781	4E-9		1.0500168	[1.033093627-1.0672172]	Illumina [8919992] (imputed)	N
809	chr22	29369397	29369398	rs5762925	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	22q12.1		rs5762925-?	0.4623	1E-10		1.0379962	[1.02627605800756-1.04985002927918]	Illumina [8919992] (imputed)	N
809	chr22	29375025	29375026	rs10854810	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q12.1	NR	rs10854810-T	NR	2E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
809	chr22	29380119	29380120	rs147413364	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	22q12.1	ZNRF3	rs147413364-T	0.357	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
809	chr22	29398376	29398377	rs5752850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3, ZNRF3-IT1	rs5752850-A	NR	4E-13		0.0936759	[0.068-0.119] unit increase	Affymetrix [321788] (imputed)	N
809	chr22	29398376	29398377	rs5752850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3, ZNRF3-IT1	rs5752850-A	NR	3E-8		0.0691463	[0.045-0.094] unit increase	Affymetrix [321016] (imputed)	N
809	chr22	29400514	29400515	rs8142788	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q12.1	ZNRF3	rs8142788-A	0.1559	1E-8		0.023	[0.015-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
809	chr22	29406218	29406219	rs13054095	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs13054095-T	0.0216	4E-16	(EA)	0.1792	[0.14-0.22] unit increase	Illumina [~ 11800000] (imputed)	N
809	chr22	29415724	29415725	rs77688610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	22q12.1		rs77688610-G	0.18619	4E-8		0.0223501	[0.014-0.03] unit decrease	Illumina [13478948] (imputed)	N
809	chr22	29416401	29416402	rs145598156	34791234	Tyrmi JS	2021-11-13	Hum Reprod	Leveraging Northern European population history: novel low-frequency variants for polycystic ovary syndrome.	Polycystic ovary syndrome (adjusted for age)	797 European ancestry cases, 140,558 European ancestry controls	2,812 European ancestry cases, 229,788 European ancestry controls	22q12.1	ZNFR3	rs145598156-T	0.0052	4E-8		3.01	[2.02-4.50]	NR [24154061] (imputed)	N
809	chr22	29417908	29417909	rs9613775	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.1	ZNRF3	rs9613775-A	0.769827	4E-28		0.0249451	[0.02-0.029] unit decrease	NR [13737936] (imputed)	N
809	chr22	29447110	29447111	rs11704898	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs11704898-?	NR	1E-14		0.0171117	[0.013-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
809	chr22	29448642	29448643	rs8138950	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	22q12.1		rs8138950-?	NR	5E-8				Affymetrix [NR] (imputed)	N
809	chr22	29448642	29448643	rs8138950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q12.1	ZNRF3	rs8138950-T	0.516202	1E-14		0.017287524	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
809	chr22	29448679	29448680	rs35759703	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q12.1	ZNRF3	rs35759703-C	0.478886	4E-12		0.015762147	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs2294239-G	NR	2E-21		0.027324	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	22q12.1	ZNRF3	rs2294239-G	NR	5E-15		0.0248692	[0.019-0.031] unit decrease	Affymetrix [323858] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs2294239-G	NR	9E-22		0.0275533	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	22q12.1	ZNRF3	rs2294239-G	NR	4E-15		0.0249378	[0.019-0.031] unit decrease	Affymetrix [127266] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs2294239-G	NR	5E-10		0.0180577	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
809	chr22	29449476	29449477	rs2294239	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs2294239-G	NR	3E-12		0.0202546	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
809	chr22	29449476	29449477	rs2294239	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	22q12.1	NR	rs2294239-A		6E-9		0.09	[0.051-0.129] unit increase	NR [NR]	N
809	chr22	29449476	29449477	rs2294239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs2294239-?	NR	2E-33				Affymetrix [~ 8270000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.1	NR	rs2294239-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.1		rs2294239-?	NR	4E-33				NR [~ 8900000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	22q12.1	NR	rs2294239-A	0.57	5E-44		0.025	[0.021-0.029] unit increase	Affymetrix [2446094] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	22q12.1	NR	rs2294239-A	0.57	5E-8				Affymetrix [2446094] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	22q12.1	NR	rs2294239-A	0.5685	4E-44		0.0243	[0.021-0.028] unit increase	NR [~ 27400000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	22q12.1	NR	rs2294239-A	0.5685	4E-44		0.0243	[0.021-0.028] unit increase	NR [~ 27400000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	22q12.1	NA	rs2294239-A	0.5683	3E-31		0.02	[0.017-0.023] unit increase	NR [~ 27400000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	22q12.1	NR	rs2294239-A	0.5683	3E-31		0.02	[0.017-0.023] unit increase	NR [~ 27400000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	5E-13		0.028	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	4E-6	(men)	0.0265	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	4E-14	(EA)	0.031	[0.023-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	3E-7	(EA, men)	0.0312	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5849	1E-6	(men)	0.0331	[0.02-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5849	1E-6	(EA, men)	0.0331	[0.02-0.046] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	2E-10	(EA)	0.0296	[0.021-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5834	2E-10		0.0296	[0.021-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-?	0.5834	2E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-?	0.5834	2E-6	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-?	0.5834	1E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-?	0.5834	1E-13				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.591	8E-9		0.0217	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.591	3E-6	(women)	0.0242	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (bacterial taxa)	984 European ancestry individuals	530 European ancestry individuals	22q12.1	ZNRF3	rs2294239-G	NR	3E-6	(k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus)	4.676452	unit decrease	Illumina [8100000] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5922	6E-12		0.0233	[0.017-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5907	4E-9	(women)	0.0267	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5896	7E-6	(men)	0.0221	[0.012-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5885	2E-6	(EA, men)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5866	7E-13	(EA)	0.0252	[0.018-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2294239-A	0.5847	7E-10	(EA, women)	0.0284	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3	rs2294239-A	0.5847	4E-9	(EA,women)	0.0261	[0.017-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29449476	29449477	rs2294239	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3	rs2294239-A	0.5847	3E-8	(EA)	0.0191	[0.012-0.026] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29450192	29450193	rs62236881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q12.1	ZNRF3	rs62236881-A	0.00252799999999997	1E-16		0.20589945	[0.16-0.25] unit increase	Affymetrix [93095623] (imputed)	N
809	chr22	29450192	29450193	rs62236881	30649302	Ruth KS	2019-01-14	Hum Mol Genet	Genome-wide association study of anti-Mullerian hormone levels in pre-menopausal women of late reproductive age and relationship with genetic determinants of reproductive lifespan.	Anti-Mullerian hormone levels in pre-menopausal women of late reproductive age	3,344 European ancestry women	NA	22q12.1	NR	rs62236881-A	0.008	1E-7		0.85	[0.54-1.16] unit increase	Illumina [~ 8400000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2179129-A	0.5844	1E-9	(women)	0.0303	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2179129-A	0.5844	1E-9	(EA, women)	0.0316	[0.021-0.042] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2179129-A	0.5828	5E-6	(women)	0.0269	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs2179129-?	0.5844	8E-9	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	22q12.1	NR	rs2179129-A	0.587757226661405	3E-15				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	22q12.1	NR	rs2179129-A	0.587757226661405	1E-15		0.026648788	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
809	chr22	29450922	29450923	rs2179129	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2179129-A	0.5899	1E-9	(EA)	0.0207	[0.014-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29450922	29450923	rs2179129	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.1	ZNRF3, KREMEN1	rs2179129-A	0.5899	1E-8	(EA, women)	0.0256	[0.017-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
809	chr22	29451670	29451671	rs4823006	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	22q12.1	NR	rs4823006-A	0.5462	8E-28		0.0186	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
809	chr22	29451670	29451671	rs4823006	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs4823006-A	0.5668	2E-6	(EA, women)	0.028	[0.017-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29451670	29451671	rs4823006	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	22q12.1	ZNRF3, KREMEN1	rs4823006-?	0.5659	6E-9	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
809	chr22	29451670	29451671	rs4823006	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Systolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	22q12.1	ZNRF3	rs4823006-G	0.424	8E-9		0.26	[0.16-0.36] unit decrease	Illumina [247039]	N
809	chr22	29451670	29451671	rs4823006	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	22q12.1	ZNRF3	rs4823006-G	0.424426812667838	9E-7		0.22692607	[0.14-0.32] unit decrease	Illumina [247039]	N
809	chr22	29451670	29451671	rs4823006	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Diastolic blood pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	154,543 European ancestry individuals, 26,183 South Asian ancestry individuals	22q12.1	ZNRF3	rs4823006-G	0.424	2E-7		0.14	[0.081-0.199] unit decrease	Illumina [247039]	N
809	chr22	29451670	29451671	rs4823006	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	22q12.1	ZNRF3, KREMEN1	rs4823006-A	0.57	1E-11		0.02	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
809	chr22	29451792	29451793	rs3208800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	22q12.1		rs3208800-T	NR	4E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
809	chr22	29453026	29453027	rs3178915	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs3178915-A	NR	2E-11		0.019644	[0.014-0.025] unit decrease	Affymetrix [321788] (imputed)	N
809	chr22	29453192	29453193	rs12321	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q12.1		rs12321-?	NR	2E-14				NR [~ 8900000] (imputed)	N
809	chr22	29453192	29453193	rs12321	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q12.1	ZNRF3	rs12321-C	0.4127	6E-9		0.1946	[0.13-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
809	chr22	29453442	29453442	rs3215453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs3215453-T	NR	2E-10		0.0180689	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
809	chr22	29454028	29454029	rs9608723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs9608723-A	NR	1E-10		0.0184839	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
809	chr22	29454028	29454029	rs9608723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.1	ZNRF3	rs9608723-A	NR	5E-11		0.0188456	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
809	chr22	29454083	29454084	rs192412418	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs192412418-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
809	chr22	29455687	29455687	rs5844832	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	22q12.1	C22orf31	rs5844832-CCTT	0.43539801	2E-8		0.284279	[0.18-0.38] unit decrease	Affymetrix [9463307] (imputed)	N
809	chr22	29455687	29455687	rs5844832	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	22q12.1	C22orf31	rs5844832-CCTT	0.43539801	7E-8		0.00519092	[0.0033-0.0071] unit increase	Affymetrix [9463307] (imputed)	N
809	chr22	29457581	29457582	rs134557	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	22q12.1		rs134557-?	NR	3E-8				NR [~ 8900000] (imputed)	N
809	chr22	29461284	29461285	rs138572244	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	22q12.1	C22orf31	rs138572244-A	0.008	2E-7		2.9	[1.94-4.35]	Illumina [1438399] (imputed)	N
809	chr22	29463220	29463221	rs134567	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q12.1		rs134567-G	0.65492	3E-11		0.01573216	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
809	chr22	29468154	29468155	rs134593	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.1	KREMEN1	rs134593-T	0.52807	1E-13		0.016862141	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
809	chr22	29468455	29468456	rs134594	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q12.1	KREMEN1	rs134594-C	0.350625	6E-10		0.016799	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
809	chr22	29468455	29468456	rs134594	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	22q12.1	KREMEN1	rs134594-C	0.35	2E-8		0.0215	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
809	chr22	29468720	29468721	rs34967120	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.1	NR	rs34967120-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
809	chr22	29474482	29474482	rs377326799	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs377326799-?	NR	8E-111		0.0474973	[0.043-0.052] unit increase	Affymetrix [20259828] (imputed)	N
809	chr22	29476768	29476769	rs77320622	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.1	KREMEN1	rs77320622-G	0.008	3E-12	(Kremen protein 1, KREMEN1.6512.68.3)	1.0	[0.73-1.27] unit decrease	Affymetrix [10572788] (imputed)	N
809	chr22	29477383	29477384	rs134613	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.1	KREMEN1	rs134613-T	0.35086	2E-112		0.0444114	[0.041-0.048] unit increase	NR [13737936] (imputed)	N
809	chr22	29477383	29477384	rs134613	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.1		rs134613-?	NR	3E-110				NR [~ 8900000] (imputed)	N
809	chr22	29483059	29483060	rs134639	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.1		rs134639-?	NR	7E-109		0.0468786	[0.043-0.051] unit increase	Affymetrix [20259828] (imputed)	N
809	chr22	29483059	29483060	rs134639	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.1	KREMEN1	rs134639-A	0.349089	9E-28	(women)	0.0513779	[0.042-0.061] unit increase	NR [17166351] (imputed)	N
809	chr22	29483059	29483060	rs134639	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.1	KREMEN1	rs134639-A	0.348269	6E-36		0.0428538	[0.036-0.05] unit increase	NR [17166351] (imputed)	N
809	chr22	29483059	29483060	rs134639	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.1	KREMEN1	rs134639-A	0.347329	1E-10	(men)	0.0309852	[0.02-0.042] unit increase	NR [17166351] (imputed)	N
810	chr22	29498117	29498118	rs5752866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q12.1		rs5752866-?	NR	8E-12				NR [~ 8900000] (imputed)	N
810	chr22	29513555	29513556	rs35241450	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	22q12.1	NR	rs35241450-CA		7E-6		0.1377	[0.078-0.198] unit decrease	Illumina [12770451] (imputed)	N
810	chr22	29513555	29513556	rs35241450	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	22q12.1	NR	rs35241450-CA		8E-6		0.123	[0.069-0.177] unit decrease	Illumina [12770451] (imputed)	N
810	chr22	29524533	29524534	rs33958791	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q12.1	KREMEN1	rs33958791-G	0.8294	1E-12		0.126	[0.089-0.163] unit decrease	Affymetrix [~ 11900000] (imputed)	N
810	chr22	29526196	29526197	rs132275	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	22q12.1	NR	rs132275-?	NR	9E-9				Illumina [7760689] (imputed)	N
810	chr22	29532970	29532971	rs12157998	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q12.1	NR	rs12157998-G	0.170865	5E-13		0.0299198	[0.022-0.038] unit decrease	NR [19129689] (imputed)	N
810	chr22	29538467	29538468	rs713728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	22q12.1		rs713728-?	NR	7E-17				NR [~ 8900000] (imputed)	N
810	chr22	29551871	29551872	rs132289	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.1	NR	rs132289-G	0.9822	1E-24	(EA)	0.2482	[0.2-0.3] unit decrease	Illumina [~ 11800000] (imputed)	N
810	chr22	29559386	29559387	rs5997449	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	22q12.1	EMID1	rs5997449-C	0.0828072403404953	8E-6		0.004369	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
810	chr22	29570555	29570556	rs35755679	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.1	KREMEN1	rs35755679-T	0.965	7E-6	(KREMEN1, 6512_68_3)	0.30022225	[0.17-0.43] unit increase	Illumina [> 1000000] (imputed)	N
810	chr22	29580483	29580484	rs8138697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.1		rs8138697-?	NR	2E-9				NR [~ 8900000] (imputed)	N
810	chr22	29605682	29605683	rs78429184	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.2	NR	rs78429184-A	0.01	2E-6		1.58	[1.38-1.78]	Illumina [8468885] (imputed)	N
810	chr22	29613519	29613520	rs132383	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	22q12.2		rs132383-A	NR	5E-7		1.2458	NR	Affymetrix [7846216] (imputed)	N
810	chr22	29616264	29616265	rs132384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.2	EMID1	rs132384-G	0.745875	2E-10		0.01656136	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
810	chr22	29616264	29616265	rs132384	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	22q12.2	NR	rs132384-A		1E-15		0.14	[0.1-0.18] unit increase	NR [NR]	N
810	chr22	29620324	29620325	rs9608740	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	22q12.2	EMID1	rs9608740-A	0.81	2E-17				Affymetrix, Illumina [8002429] (imputed)	N
810	chr22	29620324	29620325	rs9608740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.2		rs9608740-?	NR	1E-10				NR [~ 8900000] (imputed)	N
810	chr22	29620324	29620325	rs9608740	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	22q12.2	EMID1	rs9608740-?	NR	5E-17		0.1467	[0.11-0.18] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
810	chr22	29620324	29620325	rs9608740	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	22q12.2	EMID1	rs9608740-A	0.812	6E-16		0.141	[0.11-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
810	chr22	29620324	29620325	rs9608740	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q12.2	EMID1	rs9608740-A	0.8107	3E-14		0.139	[0.1-0.18] unit decrease	Affymetrix [~ 11900000] (imputed)	N
810	chr22	29621476	29621477	rs132390	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	EM1D1	rs132390-C	0.04	1E-8	(EA)	1.04	[0.99-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
810	chr22	29621476	29621477	rs132390	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	22q12.2	NR	rs132390-C	0.04	4E-7		1.14	[1.08-1.2]	Affymetrix, Illumina [~ 14000000] (imputed)	N
810	chr22	29621476	29621477	rs132390	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	22q12.2	NR	rs132390-C	0.04	3E-9		1.14	[1.08-1.2]	Affymetrix, Illumina [~ 11600000] (imputed)	N
810	chr22	29621476	29621477	rs132390	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	22q12.2	EMID1, RHBDD3, EWSR1, CHEK2	rs132390-C	0.036	3E-9		1.12	[1.07-1.18]	Affymetrix, Illumina [~ 2600000] (imputed)	N
811	chr22	29628740	29628741	rs1997719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.2	EMID1	rs1997719-T	0.413229	2E-15		0.018433742	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29628740	29628741	rs1997719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.2	EMID1	rs1997719-T	0.413245	1E-17		0.019691277	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29628740	29628741	rs1997719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q12.2		rs1997719-?	NR	3E-12				NR [~ 8900000] (imputed)	N
811	chr22	29632257	29632258	rs5763079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	EMID1	rs5763079-C	0.523424	9E-23		0.022186268	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29632257	29632258	rs5763079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	EMID1	rs5763079-C	0.52344	3E-24		0.022911042	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29632257	29632258	rs5763079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	EMID1	rs5763079-C	0.523463	1E-24		0.023081852	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29632257	29632258	rs5763079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.2	EMID1	rs5763079-C	0.523473	5E-26		0.023756478	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29632737	29632738	rs7284125	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q12.2		rs7284125-G	NR	2E-15		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
811	chr22	29632881	29632882	rs62227042	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.2	EMID1	rs62227042-T	0.415984	2E-17		0.019180445	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29633233	29633234	rs12158292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q12.2	EMID1	rs12158292-C	0.563778	2E-12		0.015960936	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29633233	29633234	rs12158292	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	22q12.2	EMID1	rs12158292-C	0.5648	1E-10		0.02378699	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29633233	29633234	rs12158292	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	22q12.2	EMID1	rs12158292-C	0.5647	5E-11		0.02422542	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29633825	29633826	rs5752882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	22q12.2	EMID1	rs5752882-T	0.5641	3E-12		0.02568261	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29633825	29633826	rs5752882	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	22q12.2	EMID1	rs5752882-T	0.5641	7E-13		0.02638436	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29633934	29633935	rs62227043	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q12.2	EMID1	rs62227043-A	0.456523	6E-19		0.020123664	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29633934	29633935	rs62227043	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q12.2	EMID1	rs62227043-A	0.4591	5E-10		0.02262826	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29637657	29637658	rs9625746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q12.2	EMID1	rs9625746-C	0.41634	2E-22		0.021885648	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29637657	29637658	rs9625746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q12.2	NR	rs9625746-C	0.411575	8E-28		0.020863	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
811	chr22	29637657	29637658	rs9625746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs9625746-C	0.350938	8E-25				Affymetrix, Illumina [23467995] (imputed)	N
811	chr22	29637657	29637658	rs9625746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q12.2	NR	rs9625746-C	0.412737	7E-28		0.021263	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
811	chr22	29643420	29643421	rs5763096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs5763096-A	0.586998	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
811	chr22	29643420	29643421	rs5763096	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q12.2	NR	rs5763096-A	0.610832	3E-14		0.015374	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
811	chr22	29647853	29647854	rs12628709	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q12.2	NR	rs12628709-G	0.10926199999999997	2E-9		0.0264022	[0.018-0.035] unit increase	Affymetrix [16580851] (imputed)	N
811	chr22	29669647	29669648	rs4820803	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs4820803-C	0.1732	2E-6	(EA)	0.0394	[0.023-0.055] unit decrease	Illumina [~ 11800000] (imputed)	N
811	chr22	29677163	29677164	rs5997460	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q12.2	EWSR1	rs5997460-G	0.781669	1E-15		0.02187022	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
811	chr22	29685162	29685163	rs11703595	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	GAS2L1	rs11703595-?	NR	4E-7	(TAG 50:1)	0.7744712	[0.47-1.07] unit decrease	Affymetrix [at least 2500000] (imputed)	N
811	chr22	29692496	29692497	rs131190	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q12.2		rs131190-T	NR	2E-12		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
811	chr22	29695928	29695929	rs2518683	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q12.2	EWSR1	rs2518683-G	0.1531	3E-10		0.03296643	[0.023-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29709663	29709663	rs695646	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q12.2	RASL10A	rs695646-GC	0.1397	3E-12		0.03647043	[0.026-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
811	chr22	29720407	29720408	rs2857464	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q12.2	RASL10A	rs2857464-C	0.217264	3E-30		0.031278174	[0.026-0.037] unit increase	Affymetrix [93095623] (imputed)	N
811	chr22	29720407	29720408	rs2857464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs2857464-A	0.787977	4E-41				Affymetrix, Illumina [17210439] (imputed)	N
811	chr22	29720407	29720408	rs2857464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q12.2	NR	rs2857464-A	0.7829	2E-42		0.031938	[0.027-0.037] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
811	chr22	29733509	29733510	rs75337432	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.2		rs75337432-?	NR	1E-26		0.0395155	[0.032-0.047] unit increase	Affymetrix [20259828] (imputed)	N
811	chr22	29735646	29735647	rs34583478	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.2	AP1B1	rs34583478-C	0.921517	2E-19		0.0309925	[0.024-0.038] unit increase	NR [13737936] (imputed)	N
811	chr22	29735646	29735647	rs34583478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.2		rs34583478-?	NR	5E-24				NR [~ 8900000] (imputed)	N
811	chr22	29740727	29740728	rs174767	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	22q12.2	AP1B1	rs174767-?	0.3843	1E-8		0.98	[0.97-0.99]	Affymetrix, Illumina [8494288] (imputed)	N
811	chr22	29748858	29748859	rs8140836	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	22q12.2		rs8140836-A	NR	2E-20		0.023	[0.018-0.028] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
812	chr22	29757089	29757090	rs4611747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	AP1B1	rs4611747-T	0.285552	5E-18		0.021729836	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr22	29757089	29757090	rs4611747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	AP1B1	rs4611747-T	0.285553	4E-18		0.02177547	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr22	29757089	29757090	rs4611747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	AP1B1	rs4611747-T	0.285564	5E-25		0.025923232	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr22	29757089	29757090	rs4611747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.2	AP1B1	rs4611747-T	0.285561	4E-25		0.026021263	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr22	29777503	29777504	rs11704551	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	22q12.2	AP1B1	rs11704551-C	0.74	5E-15		7.84	z-score increase	Affymetrix [4314223] (imputed)	N
812	chr22	29777503	29777504	rs11704551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.2	AP1B1	rs11704551-T	0.261264	1E-12		0.018306829	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
812	chr22	29791233	29791234	rs174775	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	22q12.2	AP1B1	rs174775-G	0.5689	1E-11		0.02447633	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr22	29793524	29793525	rs2267137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	22q12.2	AP1B1	rs2267137-C	0.5609	2E-10		0.02315204	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr22	29793524	29793525	rs2267137	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	22q12.2	AP1B1	rs2267137-C	0.5608	5E-10		0.02256278	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
812	chr22	29793640	29793641	rs2267138	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		22q12.2	intergenic	rs2267138-?	0.131	3E-6			[NR]	Affymetrix, Illumina [152234]	N
812	chr22	29805443	29805444	rs75401573	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q12.2	NR	rs75401573-C	0.9243	6E-9		0.0511	[0.034-0.068] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
812	chr22	29808162	29808163	rs13056435	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.2		rs13056435-?	NR	4E-27		0.0387759	[0.031-0.046] unit increase	Affymetrix [20259828] (imputed)	N
812	chr22	29808162	29808163	rs13056435	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.2	AP1B1	rs13056435-C	0.917072	2E-14		0.0480958	[0.036-0.06] unit increase	NR [17166351] (imputed)	N
812	chr22	29808162	29808163	rs13056435	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q12.2	AP1B1	rs13056435-C	0.916962	4E-11	(women)	0.0548708	[0.038-0.071] unit increase	NR [17166351] (imputed)	N
812	chr22	29819738	29819739	rs11705312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.2	NR	rs11705312-A	NR	1E-12		0.0214	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
812	chr22	29847721	29847722	rs13053817	20009918	Shrestha S	2010-01-01	AIDS	A genome-wide association study of carotid atherosclerosis in HIV-infected men.	Carotid atherosclerosis in HIV infection	177 European ancestry individuals	NA		RFPL1, THOC5, NF2, AP1B1	rs13053817-A	0.18	2E-6	(common cIMT)			Illumina [311194]	N
812	chr22	29853621	29853622	rs185004002	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs185004002-T	0.0148	2E-12	(EA)	0.1896	[0.14-0.24] unit increase	Illumina [~ 11800000] (imputed)	N
812	chr22	29861839	29861840	rs447914	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q12.2	NR	rs447914-C	0.19	4E-6		1.09	[1.05-1.13]	Illumina [8468885] (imputed)	N
812	chr22	29880772	29880773	rs165633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.2		rs165633-A	0.7575	1E-12		0.0116	[0.0085-0.0147] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
812	chr22	29880772	29880773	rs165633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.2	Intergenic	rs165633-A	0.7575	5E-12	(MTAG)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
813	chr22	29905276	29905277	rs55652051	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q12.2	THOC5	rs55652051-A	0.77056	5E-11		0.015059	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
813	chr22	29905276	29905277	rs55652051	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q12.2	THOC5	rs55652051-A	0.770606	3E-10		0.014846	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
813	chr22	29929238	29929239	rs8135828	24023261	Keller M	2013-09-10	J Lipid Res	THOC5: a novel gene involved in HDL-cholesterol metabolism.	Lipid traits	839 European ancestry individuals	up to 5,248 European ancestry individuals	22q12.2	THOC5	rs8135828-A	0.15	2E-7	(HDL-C)	0.11	[0.034-0.186] unit decrease	Affymetrix [390619]	N
813	chr22	29933286	29933287	rs73159014	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.2		rs73159014-?	NR	2E-8				NR [~ 8900000] (imputed)	N
813	chr22	29941936	29941937	rs467510	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs467510-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
813	chr22	29951649	29951650	rs7609	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	22q12.2	NR	rs7609-?		4E-9		0.0151499	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
813	chr22	29968262	29968262	rs141661483	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	NR	rs141661483-?	NR	5E-24		0.0882	[0.071-0.105] unit decrease	Illumina [at least 560000] (imputed)	N
813	chr22	29972078	29972079	rs2530660	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.2	Intergenic	rs2530660-C	0.858	3E-8	(MTAG)	0.0131	[0.0084-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
813	chr22	29977317	29977318	rs183421746	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs183421746-C	0.0094	3E-11	(EA)	0.2452	[0.17-0.32] unit increase	Illumina [~ 11800000] (imputed)	N
814	chr22	30069206	30069207	rs13055076	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	22q12.2	Intergenic	rs13055076-?		2E-6		1.455	[NR]	Affymetrix [492217] (imputed)	N
814	chr22	30099957	30099958	rs62227979	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs62227979-A	NR	1E-17		0.0303	[0.023-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
814	chr22	30110545	30110546	rs140091	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs140091-A	0.0148	4E-10	(EA)	0.1736	[0.12-0.23] unit increase	Illumina [~ 11800000] (imputed)	N
814	chr22	30114308	30114308	rs113028550	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	NR	rs113028550-?	NR	1E-31		0.1066	[0.089-0.124] unit increase	Illumina [at least 560000] (imputed)	N
814	chr22	30120622	30120623	rs73159098	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.2	NR	rs73159098-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
814	chr22	30121284	30121285	rs9614037	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs9614037-A	NR	9E-11		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
814	chr22	30121576	30121577	rs5763436	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	22q12.2	CABP7	rs5763436-A	0.5902	2E-8		0.0542	[0.035-0.073] unit increase	NR [9744772] (imputed)	N
814	chr22	30133044	30133045	rs131263	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	22q12.2	ZMAT5	rs131263-T	0.4584	5E-15		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
814	chr22	30138547	30138548	rs140120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.2	ZMAT5	rs140120-C	0.51333	1E-11		0.01682286	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr22	30163834	30163835	rs140135	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	22q12.2	UQCR10	rs140135-?	NR	6E-9	(subset analysis)			Illumina [130052]	N
815	chr22	30164627	30164628	rs140138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.2	UQCR10	rs140138-G	NR	2E-8		0.0170379	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
815	chr22	30169069	30169069	rs150151289	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.2	UQCR10	rs150151289-CA	0.094261	4E-28		0.04607254	[0.038-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
815	chr22	30169715	30169716	rs57779751	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs57779751-T	0.0942962	3E-39				Affymetrix, Illumina [20825802] (imputed)	N
815	chr22	30170654	30170655	rs142682088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	22q12.2		rs142682088-A	NR	6E-9		0.1263	[0.084-0.169] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
815	chr22	30172253	30172254	rs737721	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	22q12.2	UQCR10	rs737721-C	0.9446	2E-11		0.2579	[0.18-0.33] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
815	chr22	30184598	30184599	rs140147	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.2	NR	rs140147-?	NR	9E-8				Affymetrix [NR]	N
815	chr22	30185718	30185719	rs140150	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	22q12.2	NR	rs140150-C	0.413519	1E-12		0.050653428	[0.037-0.065] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
815	chr22	30199337	30199338	rs249394	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	22q12.2	ASCC2	rs249394-C	0.093	2E-18		0.05341759	[0.041-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
815	chr22	30200760	30200761	rs28265	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q12.2	ASCC2	rs28265-G		8E-9		0.022	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
815	chr22	30200760	30200761	rs28265	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	22q12.2	ASCC2	rs28265-C	0.916	1E-12		1.09	[1.06-1.12]	Affymetrix, Illumina [247470]	N
815	chr22	30200760	30200761	rs28265	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q12.2	ASCC2	rs28265-C	0.925	4E-14		1.09	[1.07-1.12]	Affymetrix, Illumina [247470]	N
815	chr22	30202773	30202774	rs737945	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.2		rs737945-C	0.4442	4E-16		0.0115	[0.0088-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
815	chr22	30202773	30202774	rs737945	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.2	Intergenic	rs737945-C	0.4442	3E-16	(MTAG)	0.0108	[0.0083-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
815	chr22	30214447	30214448	rs558908040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.2	ASCC2	rs558908040-T	0.413125	8E-11		0.0158261	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
815	chr22	30216899	30216900	rs9608816	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	22q12.2	ASCC2	rs9608816-?	NR	6E-7				Affymetrix, Illumina [NR] (imputed)	N
815	chr22	30220189	30220190	rs5997534	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	22q12.2	DGKI	rs5997534-?		3E-8				NR [7428630] (imputed)	N
815	chr22	30221119	30221120	rs11549795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.2	NR	rs11549795-T	NR	1E-12		0.03	[0.022-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
815	chr22	30225126	30225127	rs111907377	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	22q12.2	ASCC2	rs111907377-?	NR	2E-8		0.0533	NR L decrease	Affymetrix [9390170] (imputed)	N
815	chr22	30225972	30225973	rs73394838	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	22q12.2	ASCC2	rs73394838-G	0.056	9E-6			[NR]	Illumina [9250000] (imputed)	N
815	chr22	30236443	30236444	rs2097352	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q12.2	ASCC2, MTMR3, SLC35E4, OSBP2	rs2097352-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
815	chr22	30237361	30237362	rs1071888	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgA levels	16,883 Icelandic ancestry individuals	2,151 Swedish ancestry individuals	22q12.2	ASCC2	rs1071888-A	0.2593	3E-10		0.08	NR SD units decrease	Illumina [21568490] (imputed)	N
815	chr22	30238073	30238074	rs1894474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs1894474-G	0.523811	4E-11				Affymetrix, Illumina [21126107] (imputed)	N
815	chr22	30238073	30238074	rs1894474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q12.2	NR	rs1894474-G	0.476231	2E-13		0.014826	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
815	chr22	30238073	30238074	rs1894474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q12.2		rs1894474-?	NR	6E-11				NR [~ 8900000] (imputed)	N
815	chr22	30238316	30238317	rs1076135	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.2		rs1076135-?	NR	1E-31				NR [~ 8900000] (imputed)	N
815	chr22	30251179	30251180	rs5763555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.2		rs5763555-?	NR	1E-11				NR [~ 8900000] (imputed)	N
815	chr22	30254174	30254175	rs9614084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q12.2		rs9614084-T	NR	3E-25		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
815	chr22	30264273	30264274	rs5752973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	NR	rs5752973-A	0.409486	6E-15		0.017900672	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
815	chr22	30264273	30264274	rs5752973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	NR	rs5752973-A	0.409479	1E-15		0.01843505	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
815	chr22	30265021	30265022	rs6006288	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q12.2		rs6006288-T	0.39	2E-10		6.39	z score increase	Affymetrix [9061022] (imputed)	N
815	chr22	30269906	30269907	rs9614090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.2		rs9614090-?	NR	1E-26				NR [~ 8900000] (imputed)	N
816	chr22	30284757	30284761	rs559351615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.2	MTMR3	rs559351615-C	0.514422	4E-21		0.021268545	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr22	30288337	30288338	rs9614099	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.2	Intergenic	rs9614099-A	0.6298	1E-9	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
816	chr22	30292811	30292811	rs140357883	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	22q12.2	MTMR3	rs140357883-?	0.84	2E-9		0.022	[0.015-0.029] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
816	chr22	30292811	30292811	rs140357883	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	22q12.2	MTMR3	rs140357883-?	0.84	2E-8		0.042	[0.027-0.057] unit increase	Affymetrix [at least 8900000] (imputed)	N
816	chr22	30308179	30308180	rs1544432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs1544432-G	0.229963	4E-18				Affymetrix, Illumina [24653286] (imputed)	N
816	chr22	30324654	30324654	rs201112509	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	MTMR3	rs201112509-?	0.69	3E-34		1.12	[1.11-1.13]	Illumina [at least 560000] (imputed)	N
816	chr22	30324654	30324654	rs201112509	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	MTMR3	rs201112509-?	NR	3E-34		1.12	[1.100-1.141]	Illumina [13757430] (imputed)	N
816	chr22	30326101	30326102	rs7291756	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs7291756-G	NR	4E-9		1.0479		Affymetrix [9869154] (imputed)	N
816	chr22	30337048	30337049	rs36599	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q12.2	NR	rs36599-T	0.091686	5E-42		0.045131	[0.039-0.052] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
816	chr22	30337585	30337586	rs36600	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs36600-C	NR	1E-11		0.0196	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
816	chr22	30337585	30337586	rs36600	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs36600-C	NR	6E-28		0.0317	[0.026-0.037] unit increase	Affymetrix [9000000] (imputed)	N
816	chr22	30337585	30337586	rs36600	21725308	Hu Z	2011-07-03	Nat Genet	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	22q12.2	MTMR3	rs36600-A	0.09	6E-13		1.29	[1.20-1.38]	Affymetrix [906703]	N
816	chr22	30342027	30342027	rs57792760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	MTMR3	rs57792760-TTGTGTG	0.538351	1E-11		0.015741164	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
816	chr22	30342027	30342027	rs57792760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.2	MTMR3	rs57792760-TTGTGTG	0.53834	1E-10		0.01489369	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
816	chr22	30343185	30343186	rs39713	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	22q12.2	MTMR3	rs39713-T	0.0871	2E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
816	chr22	30343185	30343186	rs39713	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 71,934 European ancestry controls	NA	22q12.2	NR	rs39713-T	0.088	4E-8		0.1823	[0.12-0.25] unit increase	Affymetrix, Illumina [4471083] (imputed)	N
816	chr22	30343185	30343186	rs39713	33199917	Bakker MK	2020-11-16	Nat Genet	Genome-wide association study of intracranial aneurysms identifies 17 risk loci and genetic overlap with clinical risk factors.	Intracranial aneurysm	7,495 European ancestry cases, 3,259 East Asian ancestry cases, 71,934 European ancestry controls, 234,948 East Asian ancestry controls	NA	22q12.2	NR	rs39713-T	0.088	4E-8		0.182	[0.12-0.25] unit increase	Affymetrix, Illumina [3527309] (imputed)	N
816	chr22	30347806	30347808	rs796386240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.2	MTMR3	rs796386240-C	0.092194	4E-17		0.0471661	[0.04-0.054] unit increase	Affymetrix [93095623] (imputed)	N
816	chr22	30347806	30347808	rs796386240	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.2	MTMR3	rs796386240-C	0.092195	5E-29		0.042677987	[0.035-0.05] unit increase	Affymetrix [93095623] (imputed)	N
816	chr22	30348398	30348399	rs6006310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.2	MTMR3	rs6006310-T	0.4803	2E-14		0.02781313	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
816	chr22	30359409	30359410	rs5763646	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q12.2	MTMR3	rs5763646-T	0.55	9E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [NR] (imputed)	N
816	chr22	30362715	30362731	rs199950221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q12.2		rs199950221-C	NR	1E-11		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
816	chr22	30365779	30365780	rs5752989	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q12.2		rs5752989-A	NR	4E-8		0.0101	[0.0066-0.0136] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
816	chr22	30365779	30365780	rs5752989	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q12.2	NR	rs5752989-?	NR	5E-9		0.12985	[0.086-0.173] unit decrease	Affymetrix [7794483] (imputed)	N
816	chr22	30365779	30365780	rs5752989	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q12.2	NR	rs5752989-?	NR	2E-6	(male)	0.16671	[0.098-0.236] unit decrease	Affymetrix [7794483] (imputed)	N
816	chr22	30371349	30371350	rs9614123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.2	MTMR3	rs9614123-G	0.249182	1E-15		0.02031447	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
816	chr22	30371349	30371350	rs9614123	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	22q12.2	MTMR3	rs9614123-?	NR	6E-17		0.625	[0.47-0.78] unit increase	Affymetrix [11100000] (imputed)	N
816	chr22	30373426	30373427	rs9608828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q12.2		rs9608828-G	NR	7E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
816	chr22	30378702	30378703	rs5763662	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	22q12.2	MTMR3	rs5763662-T	0.0251	3E-9	(Trans-ethnic initial)	0.0767	[0.053-0.1] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
816	chr22	30378702	30378703	rs5763662	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q12.2	MTMR3	rs5763662-T	0.04	1E-8		0.077	[NR] unit increase	NR [NR] (imputed)	N
816	chr22	30386357	30386358	rs5763674	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	22q12.2	NR	rs5763674-G	0.1	1E-7		1.26		Illumina [803202]	N
816	chr22	30388600	30388601	rs2007446	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q12.2		rs2007446-T	NR	2E-16		0.0139	[0.011-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
816	chr22	30399416	30399417	rs737911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q12.2		rs737911-?	NR	8E-8				NR [~ 8900000] (imputed)	N
816	chr22	30403995	30403996	rs2074204	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	22q12.2	MTMR3	rs2074204-T	0.2625	3E-10		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
816	chr22	30405150	30405151	rs41157	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	22q12.2	HORMAD2-AS1, MTMR3	rs41157-T	0.357	4E-6		0.025	[0.013-0.037] unit increase	Illumina [7358575] (imputed)	N
817	chr22	30416526	30416527	rs41278853	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	22q12.2	MTMR3	rs41278853-A	0.917	4E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [247470]	N
817	chr22	30416526	30416527	rs41278853	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q12.2	MTMR3	rs41278853-A	0.926	6E-13		1.09	[1.06-1.11]	Affymetrix, Illumina [247470]	N
817	chr22	30423459	30423460	rs12537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q12.2		rs12537-T	0.129882	2E-9		0.0321704	[0.022-0.043] unit increase	Illumina [13476266] (imputed)	N
817	chr22	30423459	30423460	rs12537	34018994	Xu JK	2021-03-22	Chin Med J (Engl)	Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer.	Breast cancer	1,496 Han Chinese ancestry cases, 1,257 Han Chinese ancestry controls	4,138 Han Chinese ancestry cases, 5,051 Han Chinese ancestry controls	22q12.2	NR	rs12537-?	NR	9E-7		0.88	[0.82-0.95]	Illumina [up to 800000]	N
817	chr22	30423459	30423460	rs12537	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	22q12.2	HORMAD2	rs12537-C	0.817	3E-9		1.407	[1.258-1.573]	Illumina [3792949] (imputed)	N
817	chr22	30423459	30423460	rs12537	22197929	Yu XQ	2011-12-25	Nat Genet	A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy.	IgA nephropathy	1,434 Han Chinese ancestry cases, 4,270 Han Chinese ancestry controls	2,703 Han Chinese ancestry cases, 3,464 Han Chinese ancestry controls	22q12.2	MTMR3	rs12537-C	0.81	1E-11		1.28	[1.19-1.39]	Illumina [444882]	N
817	chr22	30426068	30426069	rs41174	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q12.2		rs41174-T	0.32	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
817	chr22	30426068	30426069	rs41174	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q12.2		rs41174-T	NR	9E-10		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
817	chr22	30426068	30426069	rs41174	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.2	MTMR3	rs41174-T	0.320974	7E-13		0.017073503	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
817	chr22	30426068	30426069	rs41174	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs41174-T	0.264802	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
817	chr22	30429663	30429664	rs12330007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.2		rs12330007-?	NR	4E-17				NR [~ 8900000] (imputed)	N
817	chr22	30430534	30430535	rs1807726	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q12.2	NR	rs1807726-A	0.090844	2E-49		0.046412	[0.04-0.053] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
817	chr22	30438446	30438447	rs41177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.2	CTA-85E5.10	rs41177-A	0.364761	5E-25		0.024098204	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
817	chr22	30438446	30438447	rs41177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.2	CTA-85E5.10	rs41177-A	0.364913	3E-13		0.0261739	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
817	chr22	30447101	30447102	rs188460188	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs188460188-C	0.0077	3E-8	(EA)	0.237	[0.15-0.32] unit increase	Illumina [~ 11800000] (imputed)	N
817	chr22	30450040	30450041	rs17647863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.2	CTA-85E5.10	rs17647863-G	0.0999	6E-16		0.04754244	[0.036-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr22	30451687	30451688	rs56392746	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q12.2	NR	rs56392746-G	0.9169	3E-14		0.0579	[0.043-0.073] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
817	chr22	30471678	30471679	rs757024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	22q12.2		rs757024-C	NR	1E-8		0.0944	[0.062-0.127] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
817	chr22	30485346	30485346	rs201742937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.2	HORMAD2	rs201742937-TC	0.085112	1E-11		0.026764277	[0.019-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr22	30486825	30486826	rs2412970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	22q12.2		rs2412970-G	NR	1E-16		0.0726	[0.055-0.09] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
817	chr22	30486825	30486826	rs2412970	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	22q12.2		rs2412970-A	0.555	5E-17				Affymetrix [10369434] (imputed)	N
817	chr22	30486825	30486826	rs2412970	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	22q12.2		rs2412970-A	0.555	6E-18				Affymetrix [10369434] (imputed)	N
817	chr22	30486825	30486826	rs2412970	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	22q12.2	HORMAD2	rs2412970-G	0.444091	3E-14		0.06980868	[0.052-0.088] unit decrease	Affymetrix [7288503] (imputed)	N
817	chr22	30486825	30486826	rs2412970	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	22q12.2	HORMAD2	rs2412970-G	0.43	3E-8		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
817	chr22	30486825	30486826	rs2412970	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	22q12.2	HORMAD2	rs2412970-G	0.43	1E-6	(EA)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
817	chr22	30486825	30486826	rs2412970	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q12.2	LIF, MTMR3, OSM	rs2412970-G	0.457	3E-14		1.08	[1.049-1.111]	Affymetrix, Illumina [1230000] (imputed)	N
817	chr22	30487258	30487259	rs67947502	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	22q12.2	NR	rs67947502-?	NR	2E-6		0.15824	[0.093-0.223] unit decrease	Affymetrix [9658292] (imputed)	N
817	chr22	30490999	30491000	rs73164714	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs73164714-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
817	chr22	30493881	30493882	rs5763767	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	22q12.2	UQCR10, ASCC2, ZMAT5, HORMAD2, MTMR3	rs5763767-?		4E-8				Illumina [9725440] (imputed)	N
817	chr22	30493881	30493882	rs5763767	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	22q12.2	UQCR10, ASCC2, ZMAT5, HORMAD2, MTMR3	rs5763767-?		8E-7				Illumina [9560910] (imputed)	N
817	chr22	30493881	30493882	rs5763767	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q12.2	NR	rs5763767-A	0.4538	1E-6	(EA)	1.0639322	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
817	chr22	30493881	30493882	rs5763767	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q12.2	NR	rs5763767-A	0.4538	6E-13	(EA)	1.0924478	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
817	chr22	30494370	30494371	rs2412971	34076728	Zhang YM	2021-06-02	Mol Genet Genomics	Shared genetic study gives insights into the shared and distinct pathogenic immunity components of IgA nephropathy and SLE.	IgA nephropathy	1,180 East Asian ancestry cases, 899 East Asian ancestry controls	NA	22q12.2	NR	rs2412971-G	NR	3E-6				Illumina [NR] (imputed)	N
817	chr22	30494370	30494371	rs2412971	32912934	Li M	2020-09-10	J Am Soc Nephrol	Genome-Wide Meta-Analysis Identifies Three Novel Susceptibility Loci and Reveals Ethnic Heterogeneity of Genetic Susceptibility for IgA Nephropathy.	IgA nephropathy	2,628 Chinese ancestry cases, 11,563 Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls, 1,039 Italian ancestry cases, 1,289 Italian ancestry controls	22q12.2	HORMAD2	rs2412971-G	0.696817032776961	6E-13	(East Asian)	1.3089627	[1.21637835700499-1.40859410174048]	NR [3611808] (imputed)	N
817	chr22	30494370	30494371	rs2412971	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q12.2	HORMAD2	rs2412971-A	0.446002	5E-35		0.027492745	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
817	chr22	30494370	30494371	rs2412971	27941131	Feenstra B	2016-12-09	J Med Genet	Genome-wide association study identifies variants in HORMAD2 associated with tonsillectomy.	Tonsillectomy	1,464 Northwestern European ancestry cases and 12,019 Northwestern European ancestry controls.	1,575 Northwestern European ancestry cases and 1,367 Northwestern European ancestry controls.	22q12.2	HORMAD2, CABP7, ZMAT5, UQCR10, ASCC2, MTMR3, LIF, OSM	rs2412971-G	0.550	1E-9		1.22	1.14-1.30	Illumina [7855469] (imputed)	N
817	chr22	30494370	30494371	rs2412971	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	22q12.2	HORMAD2	rs2412971-G	0.67	6E-11	(East Asian)	1.35	[NR]	Illumina [> 1000000] (imputed)	N
817	chr22	30494370	30494371	rs2412971	25305756	Kiryluk K	2014-10-12	Nat Genet	Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens.	IgA nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls, 1,553 European ancestry cases, 3,050 European ancestry controls	2,491 East Asian ancestry cases, 1,780 East Asian ancestry controls, 2,420 European ancestry cases, 7,222 European ancestry controls	22q12.2	HORMAD2	rs2412971-G	0.54	5E-12		1.2	[NR]	Illumina [> 1000000] (imputed)	N
817	chr22	30494370	30494371	rs2412971	21399633	Gharavi AG	2011-03-13	Nat Genet	Genome-wide association study identifies susceptibility loci for IgA nephropathy.	Nephropathy	1,194 Han Chinese ancestry cases, 902 Han Chinese ancestry controls	712 Han Chinese ancestry cases, 748 Han Chinese ancestry controls, 1,238 European ancestry cases, 1,172 European ancestry controls	22q12.2	LIF, HORMAD2, MTMR3, OSM	rs2412971-?	0.49 (EA)	2E-9		1.25	[NR]	Illumina [498322]	N
817	chr22	30501485	30501486	rs9614144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs9614144-A	NR	4E-20		0.0312	[0.025-0.038] unit increase	Affymetrix [9000000] (imputed)	N
817	chr22	30501485	30501486	rs9614144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs9614144-A	NR	1E-32		0.0403	[0.034-0.047] unit increase	Affymetrix [9000000] (imputed)	N
817	chr22	30503170	30503171	rs6006356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q12.2		rs6006356-A	NR	9E-45		0.0306	[0.026-0.035] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
817	chr22	30504206	30504207	rs718772	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (8 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	22q12.2		rs718772-?	NR	3E-6				Illumina [1365315]	N
817	chr22	30504651	30504652	rs5763779	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	22q12.2	NR	rs5763779-A	0.384692	2E-8		0.040699504	[0.027-0.055] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
817	chr22	30505118	30505119	rs139711323	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.2	HORMAD2	rs139711323-A	0.0914	5E-15		0.04812544	[0.036-0.06] unit increase	Affymetrix [~ 2500000] (imputed)	N
817	chr22	30512257	30512258	rs4823073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	22q12.2		rs4823073-A	NR	2E-16		0.0822	[0.063-0.102] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
817	chr22	30512257	30512258	rs4823073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.2	HORMAD2	rs4823073-A	0.446023	1E-29		0.028016295	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
817	chr22	30518501	30518502	rs5763787	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q12.2		rs5763787-T	NR	2E-28		0.036	[0.03-0.042] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
817	chr22	30519824	30519825	rs2412972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q12.2	HORMAD2	rs2412972-A	0.605954	2E-24		0.023096008	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
817	chr22	30521255	30521258	rs71198528	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA		HORMAD2	rs71198528,rs747888955-CCAG	0.545	7E-15		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
817	chr22	30521256	30521259	rs747888955	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA		HORMAD2	rs71198528,rs747888955-CCAG	0.545	7E-15		1.0752687	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
817	chr22	30522412	30522413	rs5763790	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	22q12.2	HORMAD2	rs5763790-?	NR	1E-8		0.02928	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
817	chr22	30524247	30524248	rs4820829	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q12.2	NR	rs4820829-C	0.976727	4E-10		0.0575622	[0.039-0.076] unit increase	Affymetrix [16580851] (imputed)	N
817	chr22	30526631	30526632	rs5763793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q12.2		rs5763793-T	NR	4E-26		0.0247	[0.02-0.029] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
817	chr22	30529630	30529631	rs2412973	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	22q12.2	HORMAD2	rs2412973-A	0.442	2E-9		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
817	chr22	30529630	30529631	rs2412973	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	22q12.2	HORMAD2	rs2412973-A	0.442	5E-9		0.013	[0.0091-0.0169] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
817	chr22	30529630	30529631	rs2412973	19915574	Imielinski M	2009-11-15	Nat Genet	Common variants at five new loci associated with early-onset inflammatory bowel disease.	Inflammatory bowel disease (early onset)	2,413 European ancestry cases, 6,158 European ancestry controls	1,013 European ancestry cases, 5,805 European ancestry controls	22q12.2	LIF, HORMAD2, MTMR3	rs2412973-?	0.46	2E-9		1.15	[1.01-1.31]	Illumina [~ 500000]	N
817	chr22	30531090	30531091	rs4820830	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	22q12.2	Intergenic	rs4820830-C	0.38	1E-12		1.14		Illumina [135870]	N
817	chr22	30531101	30531103	rs35089120	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		HORMAD2	rs35089120-C	NR	1E-12		1.03	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
817	chr22	30533408	30533409	rs5763800	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q12.2	NR	rs5763800-A	0.976759	9E-10		0.0267132	[0.018-0.035] unit increase	Affymetrix [16578495] (imputed)	N
818	chr22	30539820	30539821	rs2412974	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	22q12.2	HORMAD2	rs2412974-?	NR	2E-10		0.03823	[0.026-0.05] unit increase novel	Illumina [6108953] (imputed)	N
818	chr22	30540589	30540590	rs2412975	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	22q12.2		rs2412975-?	NR	2E-11				NR [~ 8900000] (imputed)	N
818	chr22	30540589	30540590	rs2412975	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	22q12.2	HORMAD2	rs2412975-?	NR	3E-10		0.03372	[0.023-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
818	chr22	30549070	30549071	rs5763821	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q12.2	HORMAD2	rs5763821-A	0.6093	1E-21		0.0191	[0.015-0.023] unit decrease	Affymetrix [18391927] (imputed)	N
818	chr22	30549070	30549071	rs5763821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	22q12.2	HORMAD2	rs5763821-C	0.4399	7E-10		0.02213083	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
818	chr22	30549070	30549071	rs5763821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	22q12.2	HORMAD2	rs5763821-C	0.4399	1E-13		0.02654227	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
818	chr22	30550379	30550380	rs737901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.2		rs737901-?	NR	1E-36				NR [~ 8900000] (imputed)	N
818	chr22	30552510	30552511	rs4336042	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	22q12.2	HORMAD2	rs4336042-G	0.389	2E-11		1.168		Illumina [252970]	N
818	chr22	30552694	30552695	rs5763825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q12.2		rs5763825-G	NR	3E-31		0.0378	[0.032-0.044] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
818	chr22	30552694	30552695	rs5763825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs5763825-G	0.11819	2E-48				Affymetrix, Illumina [24246363] (imputed)	N
818	chr22	30552812	30552813	rs16988333	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	22q12.2	HORMAD2	rs16988333-G	0.09040354926268	9E-9		0.0745	[0.049-0.1] unit decrease	NR [5035015] (imputed)	N
818	chr22	30564170	30564171	rs139059349	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs139059349-C	0.0142	2E-7	(EA)	0.1465	[0.092-0.201] unit increase	Illumina [~ 11800000] (imputed)	N
818	chr22	30570021	30570022	rs1003342	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q12.2		rs1003342-A	0.445	7E-20				Affymetrix [10369434] (imputed)	N
818	chr22	30570021	30570022	rs1003342	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	22q12.2		rs1003342-A	0.445	4E-23				Affymetrix [10369434] (imputed)	N
818	chr22	30570021	30570022	rs1003342	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	22q12.2		rs1003342-?	NR	6E-10		0.052	NR unit decrease	NR [5890016] (imputed)	N
818	chr22	30570021	30570022	rs1003342	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	22q12.2	HORMAD2	rs1003342-A	0.45	8E-19		0.0077	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
818	chr22	30570021	30570022	rs1003342	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q12.2	NR	rs1003342-?	NR	3E-15	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
818	chr22	30577770	30577771	rs714027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs714027-G	0.575178	2E-74				Affymetrix, Illumina [23472807] (imputed)	N
818	chr22	30577770	30577771	rs714027	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q12.2	NR	rs714027-G	0.552066	6E-75		0.034906	[0.031-0.039] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
818	chr22	30577770	30577771	rs714027	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q12.2	RP3-438O4.4, HORMAD2	rs714027-G	0.5537	3E-21		0.03415881	[0.027-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
818	chr22	30581721	30581722	rs5753037	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	22q12.2	intergenic	rs5753037-T	0.39	3E-16		1.1	[1.04-1.17]	Affymetrix, Illumina [841622] (imputed)	N
818	chr22	30581859	30581860	rs9625935	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	NR	rs9625935-?	NR	6E-34		0.1144	[0.096-0.133] unit decrease	Illumina [at least 560000] (imputed)	N
818	chr22	30583550	30583551	rs180755106	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	22q12.2		rs180755106-?	NR	3E-6		101.639	[99.7-103.58]	NR [673172]	N
818	chr22	30588040	30588041	rs5753043	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q12.2	NR	rs5753043-C	0.8979	4E-14		0.0613	[0.045-0.077] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
818	chr22	30590221	30590222	rs62226440	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q12.2	RP3-438O4.4	rs62226440-A	0.278689	3E-11		0.01641037	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
818	chr22	30592068	30592069	rs2412980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.2	NR	rs2412980-C	NR	5E-14		0.0319	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
818	chr22	30592068	30592069	rs2412980	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	22q12.2	LOC729980	rs2412980-?	0.09	4E-6		1.65	[1.33-2.04]	Affymetrix [832357]	N
818	chr22	30592486	30592487	rs713875	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	22q12.2	HORMAD2	rs713875-C	0.45	9E-14		0.00666	[0.0049-0.0084] unit increase	Affymetrix [at least 8002429] (imputed)	N
818	chr22	30592486	30592487	rs713875	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	22q12.2	HORMAD2, LIF	rs713875-C	0.46	7E-6		1.27		Illumina [8974355] (imputed)	N
818	chr22	30592486	30592487	rs713875	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	22q12.2	MTMR3	rs713875-C	0.471	7E-12		1.08	[1.04-1.13]	Affymetrix, Illumina [953241] (imputed)	N
818	chr22	30592807	30592808	rs16988381	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	22q12.2	NR	rs16988381-?	NR	3E-9	(mixed effect)			Illumina [~ 9700000] (imputed)	N
818	chr22	30592841	30592842	rs16988383	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	22q12.2	MTMR3, HORMAD2	rs16988383-T	NR	2E-6		1.3381	NR	Illumina [up to 1244428] (imputed)	N
818	chr22	30598515	30598516	rs6006399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	22q12.2		rs6006399-?	NR	8E-13				NR [~ 8900000] (imputed)	N
818	chr22	30598551	30598552	rs17728461	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.2	NR	rs17728461-G	NR	2E-13		0.0198	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
818	chr22	30601242	30601243	rs9614159	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	22q12.2	HORMAD2	rs9614159-A	0.2	8E-12		1.4	[NR]	Illumina [747089]	N
818	chr22	30606563	30606564	rs11913168	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.2	NR	rs11913168-A	NR	2E-9		0.0234	[0.016-0.031] unit increase	Affymetrix [9000000] (imputed)	N
818	chr22	30609210	30609211	rs71331230	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	22q12.2	NR	rs71331230-?	NR	5E-6		0.14595	[0.083-0.209] unit decrease	Affymetrix [9658292] (imputed)	N
818	chr22	30609553	30609554	rs6518681	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q12.2	MTMR3, ASCC2	rs6518681-G	0.9136	1E-12		1.09	[1.06-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
818	chr22	30610545	30610546	rs9608851	30166351	Galvan-Femenia I	2018-08-30	J Med Genet	Multitrait genome association analysis identifies new susceptibility genes for human anthropometric variation in the GCAT cohort.	Anthropometric traits (multi-trait analysis)	4,988 Spanish ancestry individuals	336,107 British ancestry individuals	22q12.2	HORMAN-LIF	rs9608851-?		3E-10				Illumina [9499600] (imputed)	N
818	chr22	30610569	30610570	rs9608852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q12.2		rs9608852-T	0.288423	7E-9		0.014160989	[0.0094-0.019] unit increase	Affymetrix [93095623] (imputed)	N
818	chr22	30617584	30617585	rs16988410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q12.2	NR	rs16988410-C	NR	5E-9		0.0311	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
818	chr22	30617584	30617585	rs16988410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.2	NR	rs16988410-C	NR	2E-10		0.0349	[0.024-0.046] unit increase	Affymetrix [9000000] (imputed)	N
818	chr22	30617584	30617585	rs16988410	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q12.2	NR	rs16988410-T	0.953773	7E-9		0.0265452	[0.018-0.036] unit decrease	Affymetrix [15000001]	N
818	chr22	30639992	30639993	rs41281637	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.2	LIF	rs41281637-C	0.99174	5E-17		0.0900391	[0.069-0.111] unit increase	NR [13737936] (imputed)	N
818	chr22	30639992	30639993	rs41281637	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.2		rs41281637-?	NR	1E-15				NR [~ 8900000] (imputed)	N
818	chr22	30639992	30639993	rs41281637	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.2		rs41281637-?	NR	6E-15		0.0915373	[0.068-0.115] unit increase	Affymetrix [20259828] (imputed)	N
818	chr22	30659565	30659566	rs2070889	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicidal ideation	79 European ancestry cases, 59 cases, 654 European ancestry controls, 779 controls	NA	22q12.2	OSM	rs2070889-A	NR	4E-6		1.97		Illumina [2711511] (imputed)	N
818	chr22	30660516	30660517	rs1476576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.2	OSM	rs1476576-C	0.785235	2E-10		0.018850679	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
818	chr22	30660516	30660517	rs1476576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	OSM	rs1476576-C	0.785238	6E-12		0.01945412	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
818	chr22	30660516	30660517	rs1476576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.2	OSM	rs1476576-C	0.785251	9E-13		0.020219155	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
818	chr22	30662762	30662763	rs5763919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	22q12.2		rs5763919-A	0.05911	3E-8		0.0408692	[0.026-0.055] unit increase	Illumina [13479091] (imputed)	N
818	chr22	30667276	30667277	rs9608859	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	22q12.2	OSM, CASTOR1, GATSL3	rs9608859-T	0.566483	8E-7		1.04	[1.02-1.05]	NR [8126035] (imputed)	N
818	chr22	30669882	30669883	rs6006426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	22q12.2		rs6006426-A	NR	5E-10		0.0543	[0.037-0.071] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
818	chr22	30669882	30669883	rs6006426	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	22q12.2	OSM, CASTOR1	rs6006426-?	NR	4E-10		0.0306741	[0.021-0.04] unit increase	Illumina [4804024] (imputed)	N
818	chr22	30669882	30669883	rs6006426	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs6006426-?		2E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
818	chr22	30669882	30669883	rs6006426	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.2	OSM	rs6006426-G	0.45884	5E-10		0.0117508	[0.008-0.0155] unit increase	NR [13737936] (imputed)	N
818	chr22	30669882	30669883	rs6006426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.2		rs6006426-?	NR	6E-13		0.0136966	[0.0096-0.0178] unit increase	Affymetrix [20259828] (imputed)	N
818	chr22	30669882	30669883	rs6006426	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	22q12.2	OSM	rs6006426-A	0.5573	9E-8		0.03	[0.019-0.041] unit increase	NR [8041861] (imputed)	N
818	chr22	30669992	30669993	rs6006427	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs6006427-?		4E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
819	chr22	30672351	30672352	rs11704358	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	22q12.2	GATSL3	rs11704358-T	NR	3E-8		0.020837	[0.014-0.028] unit increase	Affymetrix [127266] (imputed)	N
819	chr22	30672419	30672420	rs877549	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	22q12.2	GATSL3, OSM	rs877549-A	0.118	1E-7		0.047	[0.029-0.065] unit increase	Affymetrix [7947838] (imputed)	N
819	chr22	30675072	30675073	rs12484252	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs12484252-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
819	chr22	30675922	30675923	rs724055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q12.2		rs724055-?	NR	2E-10				NR [~ 8900000] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.2	GATSL3	rs13056562-T	NR	2E-8		0.0236314	[0.015-0.032] unit increase	Affymetrix [319769] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	22q12.2	GATSL3	rs13056562-T	NR	3E-8		0.0259036	[0.017-0.035] unit increase	Affymetrix [323858] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.2	GATSL3	rs13056562-T	NR	2E-8		0.0238876	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	22q12.2	GATSL3	rs13056562-T	NR	2E-8		0.0264371	[0.017-0.036] unit increase	Affymetrix [127266] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	22q12.2	GATSL3	rs13056562-T	NR	5E-9		0.0249386	[0.017-0.033] unit increase	Affymetrix [321114] (imputed)	N
819	chr22	30677721	30677722	rs13056562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	22q12.2	GATSL3	rs13056562-T	NR	9E-9		0.0245591	[0.016-0.033] unit increase	Affymetrix [321169] (imputed)	N
819	chr22	30677721	30677722	rs13056562	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.2	NR	rs13056562-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
819	chr22	30677721	30677722	rs13056562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.2		rs13056562-?	NR	1E-16				NR [~ 8900000] (imputed)	N
819	chr22	30679302	30679303	rs56300819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs56300819-C	0.208001	2E-30				Affymetrix, Illumina [24588908] (imputed)	N
819	chr22	30679386	30679387	rs2108093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	22q12.2		rs2108093-G	NR	1E-10		0.0151	[0.011-0.02] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
819	chr22	30681256	30681257	rs1043099	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	22q12.2	GATSL3	rs1043099-?	0.79	7E-9		1.19	[1.12-1.27]	Affymetrix, Illumina [1831729] (imputed)	N
819	chr22	30687065	30687066	rs55979575	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	22q12.2	RP1-130H16.18	rs55979575-A	NR	3E-8		0.0184239	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
819	chr22	30692352	30692353	rs929454	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	22q12.2	NR	rs929454-A	0.2	9E-11		0.0148	[0.01-0.019] unit decrease	NR [NR]	N
819	chr22	30699085	30699086	rs5763939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	22q12.2		rs5763939-G	NR	1E-8		0.0123	[0.0082-0.0164] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
819	chr22	30699127	30699128	rs1079227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.2	TBC1D10A	rs1079227-G	0.242481	9E-19		0.02337847	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr22	30707696	30707697	rs737948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs737948-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
819	chr22	30717738	30717739	rs28360656	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q12.2		rs28360656-C	NR	1E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
819	chr22	30717738	30717739	rs28360656	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q12.2		rs28360656-T	0.758	1E-8				Affymetrix [10369434] (imputed)	N
819	chr22	30717738	30717739	rs28360656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q12.2	TBC1D10A	rs28360656-C	0.24206	7E-13		0.018895235	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
819	chr22	30717738	30717739	rs28360656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.2	TBC1D10A	rs28360656-C	0.242032	4E-13		0.019143991	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr22	30725273	30725274	rs737751	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q12.2		rs737751-G	NR	1E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
819	chr22	30738586	30738587	rs2074733	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2074733-?		5E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
819	chr22	30738586	30738587	rs2074733	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2074733-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
819	chr22	30738586	30738587	rs2074733	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2074733-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
819	chr22	30738586	30738587	rs2074733	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2074733-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
819	chr22	30745360	30745361	rs191688264	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	22q12.2	NR	rs191688264-C		1E-6		0.4834	[0.29-0.68] SD units increase	NR [10700000] (imputed)	N
819	chr22	30748026	30748027	rs11912350	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	22q12.2	SF3A1	rs11912350-T	0.7582	2E-8		0.0130071	[0.0084-0.0176] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
819	chr22	30750906	30750907	rs2283865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.2	SF3A1	rs2283865-A	0.271988	5E-10		0.015511739	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
819	chr22	30750906	30750907	rs2283865	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q12.2		rs2283865-?	NR	4E-9				NR [~ 8900000] (imputed)	N
819	chr22	30751626	30751627	rs4820834	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	22q12.2	CCDC157	rs4820834-A	0.02	9E-6	(AA)	0.71	[0.4-1.02] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
819	chr22	30756906	30756907	rs5997623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	22q12.2		rs5997623-A	NR	4E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
819	chr22	30757435	30757436	rs79247733	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	NR	rs79247733-?	NR	1E-8		0.0776	[0.051-0.104] unit decrease	Illumina [at least 560000] (imputed)	N
819	chr22	30764452	30764453	rs757869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.2	CCDC157	rs757869-A	0.707375	2E-11		0.01623918	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		8E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		2E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		1E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		7E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		1E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		4E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
819	chr22	30764663	30764664	rs59731356	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs59731356-?		2E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
819	chr22	30768776	30768777	rs5753103	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	22q12.2	RP1-130H16.18	rs5753103-G	0.5489999999999999	3E-11		0.1377	[0.097-0.178] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
819	chr22	30770602	30770603	rs5749082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q12.2	NR	rs5749082-T	0.292461	3E-36		0.0109705	[0.0092-0.0128] unit increase	Affymetrix [16582909] (imputed)	N
819	chr22	30770602	30770603	rs5749082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q12.2	NR	rs5749082-T	0.292745	9E-15		0.0092374	[0.0067-0.0117] unit increase	Affymetrix [16582621] (imputed)	N
819	chr22	30770602	30770603	rs5749082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q12.2	NR	rs5749082-T	0.292461	1E-30		0.0113089	[0.0093-0.0133] unit increase	Affymetrix [16582965] (imputed)	N
819	chr22	30770602	30770603	rs5749082	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q12.2	NR	rs5749082-T	0.292745	5E-12		0.00917098	[0.0065-0.0118] unit increase	Affymetrix [16582614] (imputed)	N
819	chr22	30777528	30777529	rs722298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	22q12.2	NR	rs722298-A	NR	3E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
819	chr22	30779210	30779211	rs5753111	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	22q12.2	NR	rs5753111-T	0.290673	4E-23		0.0129158	[0.01-0.016] unit increase	Affymetrix [16585854] (imputed)	N
819	chr22	30779210	30779211	rs5753111	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	22q12.2	NR	rs5753111-T	0.290673	3E-20		0.0139087	[0.011-0.017] unit increase	Affymetrix [16585866] (imputed)	N
820	chr22	30807731	30807731	rs563299077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q12.2	SEC14L2, RP4-539M6.19, RNF215	rs563299077-CAAAAAAAAAAAAA	0.7469	7E-9		0.02457459	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
820	chr22	30819343	30819344	rs117730591	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	22q12.2	NR	rs117730591-C	NR	1E-7		1.3664	[NR]	Illumina [4867007] (imputed)	N
820	chr22	30833905	30833906	rs117596388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.2		rs117596388-?	NR	4E-8				NR [~ 8900000] (imputed)	N
820	chr22	30880599	30880600	rs146362531	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q12.2	NR	rs146362531-?	NR	9E-6		0.3995	[0.22-0.57] unit increase	Illumina [at least 560000] (imputed)	N
820	chr22	30887554	30887555	rs76073588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	SEC14L4	rs76073588-T	0.019748	2E-10		0.05166693	[0.036-0.067] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30887554	30887555	rs76073588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	SEC14L4	rs76073588-T	0.01975	7E-10		0.049804218	[0.034-0.066] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30887554	30887555	rs76073588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.2	SEC14L4	rs76073588-T	0.019802	2E-11		0.054092284	[0.038-0.07] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr22	30890885	30890886	rs55650691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	SEC14L4	rs55650691-A	0.011706	2E-11		0.07128442	[0.05-0.092] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30890885	30890886	rs55650691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	SEC14L4	rs55650691-A	0.011707	3E-10		0.06737076	[0.046-0.088] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30890885	30890886	rs55650691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	SEC14L4	rs55650691-A	0.011707	1E-9		0.064330794	[0.043-0.085] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30891299	30891300	rs77679347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.2	SEC14L4	rs77679347-A	0.011792	4E-10		0.06621303	[0.045-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
820	chr22	30891858	30891859	rs9608944	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (oxidative)	Up to 7,586 non-Hispanic White ancestry individuals, Up to 1,049 East Asian ancestry individuals, Up to 257 South Asian ancestry individuals, Up to 1,046 African Americans individuals, Up to 456 Mexican and Central American Hispanics individuals, Up to 489 Caribbean Island Hispanics, Up to 1,336 individuals	NA	22q12.2	SEC14L4	rs9608944-?	NR	1E-9		1.1	NR unit increase	NR [14100000] (imputed)	N
820	chr22	30892254	30892255	rs9608946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.2	SEC14L4	rs9608946-G	0.233517	1E-44		0.03672979	[0.032-0.042] unit increase	Affymetrix [93095623] (imputed)	N
820	chr22	30892254	30892255	rs9608946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs9608946-A	0.766006	8E-50				Affymetrix, Illumina [22063850] (imputed)	N
820	chr22	30892254	30892255	rs9608946	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q12.2	NR	rs9608946-A	0.764982	2E-52		0.033923	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
820	chr22	30892254	30892255	rs9608946	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.2	SEC14L4	rs9608946-G	0.2334	5E-16		0.03385119	[0.026-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
820	chr22	30892554	30892555	rs7287943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.2		rs7287943-?	NR	1E-49				NR [~ 8900000] (imputed)	N
820	chr22	30894942	30894943	rs5749111	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.2	SEC14L4	rs5749111-A	NR	3E-16		0.0374969	[0.028-0.047] unit increase	Affymetrix [16832071] (imputed)	N
820	chr22	30904811	30904812	rs13057281	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs13057281-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
820	chr22	30905487	30905488	rs187201341	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q12.2	NR	rs187201341-T	0.0087	1E-6	(EA)	0.1861	[0.11-0.26] unit increase	Illumina [~ 11800000] (imputed)	N
820	chr22	30918824	30918825	rs1001409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	22q12.2		rs1001409-G	NR	6E-12		0.0181	[0.013-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
820	chr22	30931306	30931307	rs9608972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q12.2	SEC14L6	rs9608972-T	0.758544	2E-14		0.0171815	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
820	chr22	30931306	30931307	rs9608972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q12.2	SEC14L6	rs9608972-T	0.758548	3E-14		0.017449	[0.013-0.022] unit increase	Affymetrix [NR] (imputed)	N
821	chr22	30947032	30947033	rs116976860	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	22q12.2	NR	rs116976860-A	NR	1E-7		1.3411	[NR]	Illumina [4867007] (imputed)	N
821	chr22	30949819	30949820	rs8142452	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs8142452-?		4E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30949819	30949820	rs8142452	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs8142452-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		1E-8				NR [7428630] (imputed)	N
821	chr22	30950359	30950360	rs2267158	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	22q12.2	BANK1, SLC39A8	rs2267158-?		5E-8				NR [7428630] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		6E-9	(Superior corona radiata)			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		4E-8	(Hippocampus )			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		6E-10	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		2E-9	(Posterior corona radiata )			NR [8955960] (imputed)	N
821	chr22	30950359	30950360	rs2267158	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267158-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
821	chr22	30952940	30952941	rs2267160	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267160-?		3E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylglycerol(32:1)_[M+OAc]1- levels	5,662 Pakistani ancestry individuals	NA	22q12.2		rs2267161-T	NR	4E-13		0.0774	[0.056-0.098] unit increase	Illumina [6720657] (imputed)	N
821	chr22	30953294	30953295	rs2267161	32949544	Jones E	2020-09-16	Lancet Neurol	Identification of novel risk loci and causal insights for sporadic Creutzfeldt-Jakob disease: a genome-wide association study.	Creutzfeldt-Jakob disease (sporadic)	4,110 European ancestry cases, 13,569 European ancestry controls	1,098 European ancestry cases, 498 ,016 European ancestry controls	22q12.2	GAL3ST1	rs2267161-C	0.322	2E-10		1.11	[1?00-1?23]	Affymetrix, Illumina [6314492] (imputed)	N
821	chr22	30953294	30953295	rs2267161	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	22q12.2	PRKAG2	rs2267161-?		2E-13				NR [7428630] (imputed)	N
821	chr22	30953294	30953295	rs2267161	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	22q12.2	SEC14L4, SEC14L6, GAL3ST1	rs2267161-?		3E-9				NR [7428630] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		6E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		5E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		4E-9	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		4E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		9E-10	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		8E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		5E-8	(Superior corona radiata)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		4E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		1E-9	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		1E-10	(Sagittal stratum)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		5E-13	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
821	chr22	30953294	30953295	rs2267161	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q12.2	NR	rs2267161-?		3E-10	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
821	chr22	30962741	30962742	rs42935	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	22q12.2	GAL3ST1	rs42935-G	NR	3E-8		0.017396	[0.011-0.024] unit decrease	Affymetrix [323858] (imputed)	N
821	chr22	30965756	30965757	rs42938	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs42938-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
821	chr22	30992924	30992925	rs57016637	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	3,493 Han Chinese ancestry cases, 4,709 Han Chinese ancestry controls	NA	22q12.2		rs57016637-G	NR	2E-11		1.34		Illumina [3937527] (imputed)	N
821	chr22	31003068	31003069	rs5753231	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN2	5,356 Icelandic ancestry individuals	NA	22q12.2		rs5753231-T	0.203	3E-7		0.117124	[0.073-0.162] unit increase	Illumina [7506463] (imputed)	N
821	chr22	31003068	31003069	rs5753231	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Blautia)	1,068 Japanese ancestry individuals	NA	22q12.2	PES1, TCN2	rs5753231-T	0.13	4E-6		0.098	[0.057-0.139] unit increase	Illumina [6380737] (imputed)	N
821	chr22	31003068	31003069	rs5753231	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.2	NR	rs5753231-T	0.228	8E-13	(Transcobalamin-2, TCN2.5584.21.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
821	chr22	31007022	31007023	rs75680863	32794382	Cho SB	2020-07-28	Diabetes Metab J	Exome Chip Analysis of 14,026 Koreans Reve-als Known and Newly Discovered Genetic Loci Associated with Type 2 Diabetes Mellitus.	Type 2 diabetes	14,026 Korean ancestry individuals	NA	22q12.2	TCN2	rs75680863-?	0.65	2E-7		1.5873016	[1.35-1.96]	Illumina [up to 242901]	N
821	chr22	31009819	31009820	rs5753236	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN2	5,356 Icelandic ancestry individuals	NA	22q12.2		rs5753236-G	0.4117	5E-214		0.53536	[0.5-0.57] unit increase	Illumina [7506463] (imputed)	N
821	chr22	31010416	31010417	rs117353193	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	22q12.2	TCN2	rs117353193-A	0.03	8E-10		1.87	[NR]	Illumina [747089]	N
821	chr22	31012755	31012756	rs4820885	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.2	TCN2	rs4820885-C	0.549	4E-256	(Transcobalamin-2, TCN2.5584.21.3)	0.72	[0.68-0.76] unit decrease	Affymetrix [10572788] (imputed)	N
821	chr22	31013295	31013296	rs2283873	22544364	Turnbull C	2012-04-29	Nat Genet	A genome-wide association study identifies susceptibility loci for Wilms tumor.	Wilms tumor	757 European ancestry cases, 1,879 European ancestry controls	1,488 European ancestry cases, 3,851 European ancestry controls	22q12.2	NR	rs2283873-A	0.02	5E-12		2.05	[1.57-2.69]	Illumina [599255]	N
821	chr22	31020340	31020341	rs12485165	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TCN2	5,356 Icelandic ancestry individuals	NA	22q12.2		rs12485165-T	0.1223	9E-159		0.706154	[0.65-0.76] unit decrease	Illumina [7506463] (imputed)	N
821	chr22	31020340	31020341	rs12485165	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.2	NR	rs12485165-T	0.121	5E-178	(Transcobalamin-2, TCN2.5584.21.3)	0.95	[0.89-1.01] unit decrease	Affymetrix [10572788] (imputed)	N
821	chr22	31029198	31029199	rs4340628	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.2	NR	rs4340628-T	0.303	8E-172	(Transcobalamin-2, TCN2.5584.21.3)	0.68	[0.64-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
821	chr22	31030780	31030781	rs4820023	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.2	TCN2	rs4820023-T	0.58359375	1E-120	(TCN2, 5584_21_3)	0.55448073	[0.51-0.6] unit decrease	Illumina [> 1000000] (imputed)	N
821	chr22	31044830	31044831	rs1076301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.2		rs1076301-?	NR	2E-13				NR [~ 8900000] (imputed)	N
822	chr22	31069479	31069480	rs117334031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.2	SLC35E4	rs117334031-A	0.011649	3E-11		0.07009543	[0.049-0.091] unit increase	Affymetrix [93095623] (imputed)	N
822	chr22	31083250	31083251	rs13054609	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.2		rs13054609-C	0.095834	3E-19		0.034328006	[0.027-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
822	chr22	31092424	31092425	rs7290980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.2		rs7290980-?	NR	1E-8				NR [~ 8900000] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	6E-10	(S100A6)	0.1216	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	4E-13	(PYCARD)	0.02524	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	3E-8	(ALDOA)	0.3683	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	3E-10	(ACTR3)	0.1949	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	2E-9	(PKM)	0.5188	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	2E-8	(SH3BGRL3)	0.01937	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	2E-10	(PEA15)	0.008621	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	1E-9	(KCTD12)	0.03467	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	1E-9	(CLIC1)	0.197	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	1E-8	(TAGLN2)	0.3903	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	1E-8	(LCP1)	0.6839	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31112977	31112978	rs143156117	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.2	NR	rs143156117-G	0.0122	1E-13	(ABCB6)	0.05676	NR unit increase	Illumina [1671387] (imputed)	N
822	chr22	31113080	31113081	rs201429679	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	22q12.2	NR	rs201429679-T	NR	4E-6	(Hispanic)	6.91	[4.04-9.79] unit increase	Affymetrix [14000000] (imputed)	N
822	chr22	31139317	31139318	rs926340	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	22q12.2	Intergenic	rs926340-?		4E-6		1.235	[NR]	Affymetrix [492217] (imputed)	N
822	chr22	31139317	31139318	rs926340	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	22q12.2	Intergenic	rs926340-?		8E-6		1.274	[NR]	Affymetrix [492217] (imputed)	N
822	chr22	31153275	31153276	rs9609078	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	22q12.2	NR	rs9609078-A	0.083	3E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
822	chr22	31153275	31153276	rs9609078	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (gemcitabine)	80 Japanese ancestry cases, 226 Japanese ancestry controls	NA	22q12.2	OSBP2	rs9609078-T	0.009	4E-6	(Allelic model)	10.89	[3.528-33.61]	Illumina [733202]	N
822	chr22	31181570	31181571	rs136301	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	22q12.2	OSBP2	rs136301-A	0.4173	6E-6		2.4	[1.644-3.514]	Illumina [3403929] (imputed)	N
822	chr22	31181570	31181571	rs136301	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	22q12.2	OSBP2	rs136301-A	NR	6E-6		2.404	NR	Illumina [up to 4495750] (imputed)	N
822	chr22	31186308	31186309	rs3804082	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	22q12.2	NR	rs3804082-G	NR	2E-6		1.2897	[NR]	Illumina [4867007] (imputed)	N
822	chr22	31189235	31189236	rs136293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.2	Intergenic	rs136293-A	0.2165	3E-12	(MTAG)	0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
822	chr22	31189235	31189236	rs136293	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q12.2	Intergenic	rs136293-G	0.7835	1E-11		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
823	chr22	31210757	31210758	rs136237	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (donor effect)	Up to 2,298 European ancestry individuals	NA	22q12.2	OSBP2	rs136237-A	NR	7E-7				Illumina [up to 3936786] (imputed)	N
823	chr22	31212409	31212410	rs136233	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	22q12.2		rs136233-A	0.809	2E-8		0.014	[0.0081-0.0199] unit decrease	Affymetrix [up to 90000000] (imputed)	N
823	chr22	31254035	31254036	rs5997786	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (antidepressant effects)	157 European ancestry individuals	NA	22q12.2	OSBP2	rs5997786-C	0.7995	6E-6		22.0315	[12.83-31.23] unit increase	Illumina [~ 6000000] (imputed)	N
823	chr22	31265850	31265851	rs5753363	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.2	OSBP2	rs5753363-T	0.110056	3E-11		0.023714425	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
823	chr22	31279888	31279889	rs55694472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Constipation	15,902 European ancestry cases, 395,721 European ancestry controls, 397 East Asian ancestry cases, 176,232 East Asian ancestry controls	NA	22q12.2		rs55694472-T	NR	1E-8		0.1641	[0.11-0.22] unit increase	Affymetrix, Illumina [25839155] (imputed)	N
823	chr22	31283978	31283979	rs8140448	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.2	Intergenic	rs8140448-T	0.2643	6E-15	(MTAG)	0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
823	chr22	31286927	31286928	rs41282553	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.2		rs41282553-A	0.0339	2E-9		0.0237	[0.016-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
823	chr22	31286927	31286928	rs41282553	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.2	Intergenic	rs41282553-A	0.0339	8E-12	(MTAG)	0.0252	[0.018-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
823	chr22	31298207	31298208	rs12167144	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	22q12.2		rs12167144-?	NR	5E-12				NR [~ 8900000] (imputed)	N
823	chr22	31304200	31304201	rs5753383	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q12.2	NR	rs5753383-A	NR	5E-8		5.451	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
824	chr22	31404323	31404324	rs6518723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.2	Intergenic	rs6518723-T	0.2691	1E-10	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
824	chr22	31404394	31404395	rs6518724	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.2	Intergenic	rs6518724-T	0.6862	3E-15	(MTAG)	0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
824	chr22	31404394	31404395	rs6518724	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q12.2	NR	rs6518724-?	NR	4E-7		5.076	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
824	chr22	31405838	31405839	rs9609178	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q12.2	Intergenic	rs9609178-C	0.3148	6E-13		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
824	chr22	31416032	31416033	rs5997842	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.2		rs5997842-T	0.2749	7E-9	(conditional-joint)	0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
824	chr22	31419208	31419209	rs7288964	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q12.2	Intergenic	rs7288964-A	0.2753	1E-11	(MTAG)	0.0175	[0.012-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
824	chr22	31419448	31419449	rs118131223	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs118131223-T	0.0703841	4E-13				Affymetrix, Illumina [24246363] (imputed)	N
824	chr22	31438360	31438361	rs111383589	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	22q12.2	SMTN	rs111383589-C	0.892	2E-6		0.087	[0.052-0.122] unit decrease	Illumina [6150213] (imputed)	N
824	chr22	31456832	31456833	rs7284108	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	22q12.2	SMTN, SELENOM, INPP5J, PLA2G3, RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs7284108-?	NR	3E-10		0.00102548	[-0.00395-0.006] unit decrease	Affymetrix [25921788] (imputed)	N
824	chr22	31456832	31456833	rs7284108	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	22q12.2	SMTN, SELENOM, INPP5J, PLA2G3, RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs7284108-?	NR	3E-10		0.0158819	[0.011-0.021] unit increase	Affymetrix [25921788] (imputed)	N
825	chr22	31479070	31479071	rs17822214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.2		rs17822214-?	NR	3E-9				NR [~ 8900000] (imputed)	N
825	chr22	31491294	31491295	rs3205187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	22q12.2	SMTN	rs3205187-G	NR	1E-8		0.0185341	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
825	chr22	31491294	31491295	rs3205187	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	22q12.2	SMTN	rs3205187-G	NR	2E-10		0.020829	[0.014-0.027] unit decrease	Affymetrix [323858] (imputed)	N
825	chr22	31514476	31514477	rs2017301	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	SELM	rs2017301-?	NR	2E-6	(leucine)	0.18385477	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
825	chr22	31514476	31514477	rs2017301	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	SELM	rs2017301-?	NR	1E-7	(isoleucine)	0.2062796	[0.13-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
825	chr22	31529042	31529043	rs9917541	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	22q12.2	PLA2G3, INPP5J	rs9917541-?	NR	5E-8		0.71	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
825	chr22	31535871	31535872	rs2074735	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	22q12.2		rs2074735-?	NR	1E-12		0.0292667	[0.021-0.037] unit increase	NR [6912294] (imputed)	N
825	chr22	31535871	31535872	rs2074735	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	22q12.2		rs2074735-G	0.935904	8E-12		0.027	[0.019-0.035] unit increase	NR [7250403] (imputed)	N
825	chr22	31535871	31535872	rs2074735	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	22q12.2	NR	rs2074735-C	0.064197	7E-12		0.027256	[0.019-0.035] unit increase	Affymetrix [16668957] (imputed)	N
825	chr22	31541211	31541212	rs56195223	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q12.2	PLA2G3	rs56195223-T	0.8895	4E-16		0.0247	[0.019-0.031] unit decrease	Affymetrix [18391927] (imputed)	N
825	chr22	31542136	31542137	rs2413029	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.2	NR	rs2413029-?	NR	3E-6		0.0081001	[0.0047-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
825	chr22	31553353	31553354	rs874356	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q12.2	RNF185, RP3-412A9.15	rs874356-T	0.59616	6E-13		0.016355157	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
825	chr22	31553353	31553354	rs874356	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs874356-T	0.57487	2E-17				Affymetrix, Illumina [24649327] (imputed)	N
825	chr22	31559254	31559255	rs8135417	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q12.2	RNF185	rs8135417-G	0.353604	4E-8		0.0113468	[0.0073-0.0154] unit decrease	Affymetrix [NR] (imputed)	N
825	chr22	31559320	31559320	rs34873433	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q12.2	NR	rs34873433-?	NR	7E-8		4.77	[3.73-6.1]	Illumina [539000] (imputed)	N
825	chr22	31572962	31572963	rs5997898	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	22q12.2	NR	rs5997898-A	0.4194	8E-11		0.0118	[0.0083-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
825	chr22	31580345	31580346	rs5997900	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs5997900-A	0.445235	1E-19				Affymetrix, Illumina [23114412] (imputed)	N
825	chr22	31585859	31585860	rs183240406	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q12.2	RNF185	rs183240406-T	0.0016	8E-6		0.6775	[0.38-0.98] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
825	chr22	31585859	31585860	rs183240406	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q12.2	RNF185	rs183240406-T	0.0016	8E-6		0.6775	[0.38-0.98] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
825	chr22	31587154	31587155	rs8141987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q12.2		rs8141987-G	NR	2E-15		0.0137	[0.01-0.017] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
826	chr22	31593434	31593435	rs2027982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.2	NR	rs2027982-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
826	chr22	31593434	31593435	rs2027982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.2	NR	rs2027982-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
826	chr22	31593434	31593435	rs2027982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.2		rs2027982-?	NR	2E-9				NR [~ 8900000] (imputed)	N
826	chr22	31595079	31595080	rs5753507	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q12.2		rs5753507-T	0.27	4E-10		6.25	z score increase	Affymetrix [9061022] (imputed)	N
826	chr22	31595251	31595252	rs5753509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	22q12.2		rs5753509-T	0.463919	5E-10		0.0127132	[0.0087-0.0167] unit decrease	Illumina [13479295] (imputed)	N
826	chr22	31622538	31622539	rs4820955	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q12.2	LIMK2	rs4820955-A	NR	1E-8		1.0652	NR	Affymetrix, Illumina [8278136] (imputed)	N
826	chr22	31626043	31626045	rs778537602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.2	LIMK2	rs778537602-C	0.580082	2E-12		0.016290732	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr22	31645758	31645759	rs2106294	21150874	McDonough CW	2010-12-08	Kidney Int	A genome-wide association study for diabetic nephropathy genes in African Americans.	Type 2 diabetes nephropathy	965 African American cases, 1,029 African American controls	709 African American cases, 690 African American controls	22q12.2	LIMK2	rs2106294-T	0.94	4E-6		1.75	[1.39-2.22]	Affymetrix [832357]	N
826	chr22	31647093	31647094	rs4820043	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.2	NR	rs4820043-?	NR	9E-6		0.0076614	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
826	chr22	31659100	31659101	rs739427	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q12.2	NR	rs739427-C	0.511723	1E-29		0.022486	[0.019-0.026] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
826	chr22	31665786	31665787	rs11703847	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	PIK3IP1	rs11703847-?	NR	7E-6	(isoleucine)	0.29312903	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
826	chr22	31665861	31665862	rs2413045	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q12.2	NR	rs2413045-A	NR	9E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
826	chr22	31668249	31668250	rs13056815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	22q12.2	LIMK2	rs13056815-A	0.5132	8E-9		0.02066002	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
826	chr22	31668249	31668250	rs13056815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	22q12.2	LIMK2	rs13056815-A	0.5132	6E-15		0.02800929	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
826	chr22	31668249	31668250	rs13056815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	22q12.2	LIMK2	rs13056815-A	0.5131	9E-17		0.02967577	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
826	chr22	31668249	31668250	rs13056815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	22q12.2	LIMK2	rs13056815-A	0.5132	2E-17		0.03051263	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
826	chr22	31668249	31668250	rs13056815	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	22q12.2	LIMK2	rs13056815-A	0.5131	1E-11		0.02431502	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
826	chr22	31675184	31675185	rs4141404	23776197	Leandro-Garcia LJ	2013-06-17	J Med Genet	Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.	Paclitaxel-induced neuropathy	143 European ancestry individuals		22q12.2	PLA2G3, LIMK2, PISD	rs4141404-A	0.25	3E-6		2.41	[1.66-3.48]	Illumina [518577]	N
826	chr22	31676991	31676992	rs5997938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.2	LIMK2, PIK3IP1	rs5997938-G	0.515289	7E-16		0.017938178	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr22	31676991	31676992	rs5997938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.2		rs5997938-?	NR	2E-18				NR [~ 8900000] (imputed)	N
826	chr22	31688844	31688845	rs67046615	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA		RP3-400N23.6	rs67046615-G	0.587312	4E-10		0.014264681	[0.0098-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
826	chr22	31693584	31693585	rs9619187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.2	RP3-400N23.6	rs9619187-T	0.515187	2E-24		0.022573248	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
827	chr22	31725633	31725634	rs140074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.2	PATZ1, RP3-400N23.6	rs140074-G	0.486047	5E-37		0.028182132	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
827	chr22	31725633	31725634	rs140074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.2	NR	rs140074-G	0.560025	2E-29				Affymetrix, Illumina [19872809] (imputed)	N
827	chr22	31725633	31725634	rs140074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q12.2		rs140074-?	NR	9E-28				NR [~ 8900000] (imputed)	N
827	chr22	31727330	31727330	rs572182531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.2	PATZ1, RP3-400N23.6	rs572182531-CT	0.124893	3E-14		0.02688221	[0.02-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
827	chr22	31727330	31727330	rs572182531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.2	PATZ1, RP3-400N23.6	rs572182531-CT	0.124895	4E-15		0.027818695	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
827	chr22	31727330	31727330	rs572182531	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	22q12.2	PATZ1, RP3-400N23.6	rs572182531-CT	0.1224	6E-10		0.035843	[0.024-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
827	chr22	31727330	31727330	rs572182531	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	22q12.2	PATZ1, RP3-400N23.6	rs572182531-CT	0.1224	7E-10		0.03581047	[0.024-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
827	chr22	31730168	31730169	rs28715	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.2	PATZ1	rs28715-T	NR	9E-10		0.0235931	[0.016-0.031] unit increase	Affymetrix [16832071] (imputed)	N
827	chr22	31735211	31735212	rs5753566	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	22q12.2	PATZ1	rs5753566-?	NR	3E-8		0.016030844	[0.01-0.022] unit decrease	Illumina [27896057] (imputed)	N
827	chr22	31745273	31745274	rs9609263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q12.2	AC005003.1	rs9609263-C	NR	1E-8		0.0163135	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
827	chr22	31745273	31745274	rs9609263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q12.2	AC005003.1	rs9609263-C	NR	4E-9		0.0168882	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
827	chr22	31745273	31745274	rs9609263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	22q12.2	AC005003.1	rs9609263-C	NR	6E-11		0.0188664	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
827	chr22	31745273	31745274	rs9609263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	22q12.2	AC005003.1	rs9609263-C	NR	1E-9		0.017639	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
827	chr22	31750012	31750013	rs9606833	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	22q12.2	SMTN, SELENOM, INPP5J, PLA2G3, RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs9606833-?	NR	1E-15		0.00387167	[-0.00169-0.00944] unit increase	Affymetrix [25921788] (imputed)	N
827	chr22	31750012	31750013	rs9606833	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	22q12.2	SMTN, SELENOM, INPP5J, PLA2G3, RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs9606833-?	NR	1E-15		0.0225697	[0.017-0.028] unit decrease	Affymetrix [25921788] (imputed)	N
827	chr22	31750897	31750898	rs12152166	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q12.2		rs12152166-A	0.27	1E-10		6.46	z score increase	Affymetrix [9061022] (imputed)	N
827	chr22	31750897	31750898	rs12152166	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q12.2	NR	rs12152166-A	0.2792	2E-10				NR [9056863] (imputed)	N
827	chr22	31753848	31753849	rs131213	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.2	intergenic	rs131213-A	0.4817	6E-9		0.02064926	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr22	31783780	31783781	rs2413052	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	22q12.2	SMTN, SELENOM, INPP5J, PLA2G3, RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs2413052-?	NR	1E-11		0.0193561	[0.014-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
827	chr22	31790013	31790014	rs5997969	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	22q12.2	LINC01521, DRG1	rs5997969-C	0.664919009498664	4E-8		0.0267	[0.017-0.036] SD decrease	Illumina [22400000] (imputed)	N
827	chr22	31813057	31813058	rs35955747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q12.2		rs35955747-T	NR	2E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
827	chr22	31813057	31813058	rs35955747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q12.2	DRG1	rs35955747-T	0.539084	6E-17		0.018624913	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
827	chr22	31813057	31813058	rs35955747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q12.2	NR	rs35955747-T	0.53899	2E-18		0.017093	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
827	chr22	31813057	31813058	rs35955747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q12.2	NR	rs35955747-T	0.538868	1E-21		0.018967	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
827	chr22	31813057	31813058	rs35955747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	22q12.2	DRG1	rs35955747-T	0.5393	5E-9		0.02111264	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr22	31813057	31813058	rs35955747	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	22q12.2	DRG1	rs35955747-T	0.5393	8E-9		0.02074905	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
827	chr22	31821718	31821719	rs926928	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q12.2		rs926928-?	NR	2E-14				NR [~ 8900000] (imputed)	N
827	chr22	31838517	31838518	rs5753618	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	22q12.2	Intergenic	rs5753618-?		8E-6		1.274	[NR]	Affymetrix [492217] (imputed)	N
827	chr22	31838517	31838518	rs5753618	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	22q12.2	Intergenic	rs5753618-?		6E-7		1.366	[NR]	Affymetrix [492217] (imputed)	N
828	chr22	31859858	31859859	rs5753627	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q12.2		rs5753627-?	NR	9E-8				NR [~ 8900000] (imputed)	N
828	chr22	31861949	31861950	rs5753630	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	SFI1	rs5753630-?	NR	4E-7	(isoleucine)	0.1755459	[0.11-0.24] unit decrease	Affymetrix [at least 2500000] (imputed)	N
828	chr22	31861949	31861950	rs5753630	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	SFI1	rs5753630-?	NR	1E-6	(leucine)	0.16622065	[0.099-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
828	chr22	31863553	31863554	rs62236223	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	22q12.2	EIF4ENIF1	rs62236223-?		7E-6	(PC2)	0.1243	[NR] unit increase	Illumina [4167292] (imputed)	N
828	chr22	31951807	31951808	rs16989760	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	22q12.2	PISD, SFI1	rs16989760-?		3E-6	(PC2)	0.1297	[NR] unit increase	Illumina [4167292] (imputed)	N
828	chr22	31976148	31976149	rs149693590	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	22q12.2	NR	rs149693590-?	NR	4E-6		0.01962	[0.011-0.028] unit decrease	Affymetrix [9658292] (imputed)	N
829	chr22	31986131	31986132	rs3986045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q12.2		rs3986045-A	NR	1E-10		0.01	[0.0071-0.0129] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
829	chr22	31986135	31986136	rs116783514	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	22q12.2	SFI1	rs116783514-C		2E-6	(AA)	4.09	[1.19-13.99]	Affymetrix, Illumina [NR] (imputed)	N
829	chr22	31993651	31993652	rs62237815	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q12.2	SFI1	rs62237815-G	0.078395	2E-9		0.024613025	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
829	chr22	31993651	31993652	rs62237815	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q12.2	NR	rs62237815-G	0.078731	8E-11		0.022846	[0.016-0.03] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
829	chr22	31998611	31998612	rs2006771	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q12.2		rs2006771-A	0.4547	1E-8		0.078019194	[0.051-0.105] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
829	chr22	31998611	31998612	rs2006771	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	22q12.2	NR	rs2006771-A	0.18	3E-8		1.21		Illumina [803202]	N
829	chr22	31999222	31999223	rs2070274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q12.2	SFI1	rs2070274-A	0.651687	5E-10		0.014454178	[0.0099-0.019] unit increase	Affymetrix [93095623] (imputed)	N
829	chr22	32001049	32001050	rs2236033	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	22q12.2	SFI1	rs2236033-A	0.3	4E-9		1.11	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
829	chr22	32002293	32002294	rs5753723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	22q12.2	SFI1	rs5753723-T	NR	3E-9		0.0221387	[0.015-0.029] unit decrease	Affymetrix [323858] (imputed)	N
829	chr22	32019695	32019696	rs57725422	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	22q12.2		rs57725422-?	NR	5E-7		48.0171	[46.51-49.52]	NR [663083]	N
829	chr22	32026923	32026924	rs3747156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.2	SFI1	rs3747156-?	NR	3E-7	(isoleucine)	0.3224227	[0.2-0.45] unit increase	Affymetrix [at least 2500000] (imputed)	N
829	chr22	32093267	32093268	rs55728055	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	22q12.2	C22orf30	rs55728055-?		6E-6	(PC2)	0.1325	[NR] unit increase	Illumina [4167292] (imputed)	N
830	chr22	32131643	32131643	rs11443259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q12.2		rs11443259-GAA	NR	8E-11		0.0279	[0.019-0.036] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
830	chr22	32138137	32138138	rs62238885	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	22q12.2	DEPDC5	rs62238885-?		2E-6	(PC2)	0.1541	[NR] unit increase	Illumina [4167292] (imputed)	N
830	chr22	32155444	32155445	rs5749330	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	22q12.2	RNF185, LIMK2, PIK3IP1, PATZ1, DRG1, EIF4ENIF1, SFI1, PISD, PRR14L, DEPDC5	rs5749330-?	NR	3E-8	(female)	0.0214016	[0.014-0.029] unit increase	Affymetrix [25921788] (imputed)	N
830	chr22	32176824	32176825	rs61676179	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	22q12.2		rs61676179-C	0.949007	5E-8		0.0509432	[0.033-0.069] unit increase	NR [11722792] (imputed)	N
830	chr22	32187866	32187867	rs138645938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.2	DEPDC5	rs138645938-C	0.050988	7E-13		0.03650991	[0.027-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr22	32187866	32187867	rs138645938	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.2	DEPDC5	rs138645938-C	0.050987	8E-14		0.03799848	[0.028-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
830	chr22	32203333	32203334	rs75307421	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q12.3	NR	rs75307421-G	0.9687	3E-8		0.0737	[0.048-0.1] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
830	chr22	32208398	32208399	rs149401731	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.3	Intergenic	rs149401731-T	0.0195	2E-8	(MTAG)	0.0363	[0.024-0.049] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
830	chr22	32213983	32213984	rs78212183	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	22q12.3	NR	rs78212183-G	0.07	5E-9		1.34		Illumina [803202]	N
830	chr22	32219627	32219628	rs56915796	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.3	NR	rs56915796-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
830	chr22	32225362	32225363	rs147481775	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	22q12.3	DEPDC5	rs147481775-A		6E-7		4.66	[1.22-17.88]	Affymetrix, Illumina [NR] (imputed)	N
830	chr22	32229648	32229649	rs5994434	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA	22q12.3	DEPDC5	rs5994434-?	NR	5E-7	(Average Intelligence)	6.29	[3.88-8.70] unit decrease	Illumina [795637]	N
831	chr22	32251609	32251610	rs112699334	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q12.3	Intergenic	rs112699334-T	0.9794	1E-8		0.0391	[0.026-0.053] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
831	chr22	32265902	32265903	rs1012068	21725309	Miki D	2011-07-03	Nat Genet	Variation in the DEPDC5 locus is associated with progression to hepatocellular carcinoma in chronic hepatitis C virus carriers.	Chronic hepatitis C infection	212 Japanese ancestry chronic hepatitis C with hepatocellular carcinoma cases, 765 Japanese ancestry chronic hepatitis C without hepatocellular carcinoma cases	710 Japanese ancestry chronic hepatitis C with hepatocellular carcinoma cases, 1,625 Japanese ancestry chronic hepatitis C without hepatocellular carcinoma cases	22q12.3	DEPDC5	rs1012068-G	0.12	1E-13		1.75	[1.51-2.03]	Illumina [467538]	N
831	chr22	32272657	32272658	rs136867	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	22q12.3	DEPDC5	rs136867-?	0.6915	3E-7		6.329114		Affymetrix [757439]	N
831	chr22	32277881	32277882	rs149140438	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	22q12.3	DEPDC5	rs149140438-A	0.98	1E-8		0.9		NR [8546065] (imputed)	N
831	chr22	32281567	32281568	rs136872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.3		rs136872-?	NR	2E-9				NR [~ 8900000] (imputed)	N
831	chr22	32303333	32303334	rs9609381	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.3	C22orf24	rs9609381-?	NR	2E-6	(PC 38:6)	0.4015667	[0.24-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
831	chr22	32324691	32324692	rs4820998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q12.3		rs4820998-A	NR	2E-13		0.0171	[0.013-0.022] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
831	chr22	32324691	32324692	rs4820998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q12.3	C22orf24	rs4820998-A	0.312207	5E-19		0.021815397	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
831	chr22	32324691	32324692	rs4820998	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs4820998-A	0.302739	3E-16				Affymetrix, Illumina [23467995] (imputed)	N
831	chr22	32325112	32325112	rs142773536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q12.3	NR	rs142773536-G	0.709486	3E-8		0.00501813	[0.0031-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
831	chr22	32325112	32325112	rs142773536	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q12.3	NR	rs142773536-G	0.709486	5E-8		0.00544778	[0.0034-0.0075] unit increase	Affymetrix [16582965] (imputed)	N
831	chr22	32326020	32326021	rs2015580	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q12.3	C22orf24	rs2015580-T	0.311578	1E-12		0.017347338	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
831	chr22	32335785	32335786	rs138027893	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	22q12.3	NR	rs138027893-C	0.948842	8E-6		0.135	[0.076-0.194] unit decrease	NR [9260588] (imputed)	N
831	chr22	32348840	32348841	rs117001013	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q12.3	NR	rs117001013-C	0.9186	1E-8		0.0474	[0.031-0.064] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
831	chr22	32348840	32348841	rs117001013	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q12.3	YWHAH	rs117001013-C	0.9117	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
831	chr22	32351291	32351292	rs149411586	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q12.3	YWHAH	rs149411586-A	0.987	5E-6		0.25	NR unit decrease	Illumina [NR] (imputed)	N
832	chr22	32383418	32383419	rs74534759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs74534759-G	NR	2E-13		0.0331	[0.024-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
832	chr22	32389341	32389342	rs117086479	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	22q12.3	SLC5A1	rs117086479-G	0.06	6E-13	(EA)	7.21	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
832	chr22	32398341	32398342	rs116903413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q12.3		rs116903413-T	NR	7E-16		0.0341	[0.026-0.042] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
832	chr22	32411348	32411350	rs202131409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	22q12.3		rs202131409-C	NR	1E-8		0.0212	[0.014-0.028] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
832	chr22	32445945	32445946	rs17683011	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GLP-1 levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	22q12.3	SLC5A1	rs17683011-G	0.079	4E-8		0.091	[0.058-0.124] unit increase	Illumina [at least 81396]	N
832	chr22	32462563	32462564	rs733907	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	22q12.3	NR	rs733907-T	0.92	5E-9		0.0199	[0.013-0.027] unit increase	NR [NR]	N
832	chr22	32487699	32487700	rs17683430	29093273	Almgren P	2017-11-02	JCI Insight	Genetic determinants of circulating GIP and GLP-1 concentrations.	GIP levels in response to oral glucose tolerance test (120 minutes)	3,344 Swedish ancestry individuals	4,905 Finnish ancestry individuals	22q12.3	SLC5A1	rs17683430-A	0.074	3E-18		0.122	[0.093-0.147] unit increase	Illumina [at least 81396]	N
833	chr22	32517430	32517431	rs9609429	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	22q12.3	AP1B1P1	rs9609429-T	0.7236	6E-10		0.1203	[0.082-0.159] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
833	chr22	32543913	32543914	rs9609452	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	22q12.3	C22orf42	rs9609452-T		4E-6		1.42	[NR]	Illumina [up to 9464381] (imputed)	N
833	chr22	32557938	32557939	rs5994479	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	22q12.3	C22orf42	rs5994479-G	0.217	1E-10		1.159	[0.81-1.5] unit decrease	Illumina [621723]	N
833	chr22	32558639	32558640	rs144964180	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	22q12.3	NR	rs144964180-A	0.0122	7E-6		160.0	[90-229] unit increase	NR [9714326] (imputed)	N
833	chr22	32578911	32578912	rs62238980	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	22q12.3	NR	rs62238980-?	NR	2E-6		0.0792	[0.046-0.112] unit decrease	Illumina [at least 560000] (imputed)	N
833	chr22	32609177	32609178	rs117398778	30823506	Hong EP	2019-02-25	J Clin Med	Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population.	Intracranial aneurysm	250 Korean ancestry cases, 296 Korean ancestry controls	NA	22q12.3	SLC5A4-AS1	rs117398778-C	0.07	2E-9		3.74	[2.43-5.75]	Affymetrix [508192]	N
833	chr22	32627263	32627264	rs9619254	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	22q12.3	SLC5A4, RFPL2	rs9619254-?	NR	2E-6	(EA)			Illumina [7205781] (imputed)	N
834	chr22	32639982	32639983	rs13058581	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	22q12.3	NR	rs13058581-A	0.065	3E-7		0.63	[0.39-0.87] unit decrease	Illumina [9469131] (imputed)	N
834	chr22	32656560	32656561	rs41441744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs41441744-?	NR	8E-38				Affymetrix [NR]	N
834	chr22	32665378	32665379	rs41520848	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs41520848-?	NR	2E-9				Affymetrix [NR]	N
834	chr22	32741918	32741919	rs28578592	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q12.3	NR	rs28578592-?	NR	6E-7		0.045585	[0.028-0.063] unit increase	Affymetrix [805426] (imputed)	N
834	chr22	32745915	32745916	rs5998432	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal T-tau levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	22q12.3	intergenic	rs5998432-T	NR	9E-7	(MCI)			Illumina [498205]	N
835	chr22	32783903	32783904	rs12530	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q12.3	NR	rs12530-C	0.18432396929239	3E-6	(IGP40)	0.1828	[0.11-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
835	chr22	32790980	32790981	rs9680823	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs9680823-?	NR	2E-15				Affymetrix [NR]	N
835	chr22	32832873	32832874	rs2076054	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine with aura	5,118 European ancestry cases, 74,239 European ancestry controls	NA	22q12.3	intergenic	rs2076054-C	0.26	8E-6		1.12	[1.07-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
835	chr22	32860249	32860250	rs8135723	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM1	5,368 Icelandic ancestry individuals	NA	22q12.3		rs8135723-T	0.4515	4E-109		0.412196	[0.38-0.45] unit increase	Illumina [7506463] (imputed)	N
835	chr22	32861082	32861083	rs9606957	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q12.3		rs9606957-?	NR	4E-40				NR [~ 8900000] (imputed)	N
835	chr22	32867527	32867528	rs9609565	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	22q12.3	FBX07	rs9609565-G	NR	4E-10	(MCV)	0.37	[0.25-0.49] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
835	chr22	32871226	32871227	rs8136485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	FBXO7	rs8136485-T	0.213643	7E-47		0.04243893	[0.037-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32871226	32871227	rs8136485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.3	FBXO7	rs8136485-T	0.213617	3E-46		0.042604595	[0.037-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32871226	32871227	rs8136485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	FBXO7	rs8136485-T	0.213464	1E-57		0.0643853	[0.059-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32871226	32871227	rs8136485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	FBXO7	rs8136485-T	0.213495	3E-41		0.039561298	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32872592	32872593	rs5754109	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	FBXO7	rs5754109-A	0.283	1E-75	(Ribonucleoside-diphosphate reductase large subunit, RRM1.11360.39.3)	0.48	[0.42-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
835	chr22	32873126	32873127	rs2142718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	FBXO7	rs2142718-C	0.602019	2E-49		0.03342846	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
835	chr22	32873126	32873127	rs2142718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	FBXO7	rs2142718-C	0.601951	1E-64		0.041697323	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32873126	32873127	rs2142718	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q12.3	FBXO7	rs2142718-?	NR	5E-15		0.0392	[0.029-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
835	chr22	32874257	32874258	rs738264	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RRM1	5,368 Icelandic ancestry individuals	NA	22q12.3		rs738264-T	0.3156	3E-236		0.622986	[0.59-0.66] unit decrease	Illumina [7506463] (imputed)	N
835	chr22	32874257	32874258	rs738264	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	22q12.3		rs738264-G	0.728	2E-85		0.24	[0.22-0.27] % increase	Affymetrix [NR] (imputed)	N
835	chr22	32876646	32876647	rs1033407	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs1033407-A	0.633113	7E-54				Affymetrix, Illumina [24332387] (imputed)	N
835	chr22	32879616	32879617	rs4820079	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	22q12.3		rs4820079-?	0.5017	2E-9		0.2244	[0.15-0.3] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
835	chr22	32879616	32879617	rs4820079	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	22q12.3		rs4820079-?	0.5017	9E-9		0.0822	[0.054-0.11] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
835	chr22	32879616	32879617	rs4820079	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	22q12.3		rs4820079-?	0.5045	6E-8		0.1072	[0.068-0.146] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
835	chr22	32880584	32880585	rs5749446	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q12.3	NR	rs5749446-?	NR	1E-7				NR [2500000] (imputed)	N
835	chr22	32880584	32880585	rs5749446	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q12.3	FBXO7	rs5749446-T	0.62	3E-13	(EA, MCH)	0.007	[-0.00084-0.01484] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
835	chr22	32881745	32881746	rs5754111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q12.3		rs5754111-A	0.766193	5E-17		0.0357298	[0.027-0.044] unit decrease	Illumina [13476266] (imputed)	N
835	chr22	32881745	32881746	rs5754111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	22q12.3		rs5754111-A	0.766326	5E-17		0.0359924	[0.028-0.044] unit decrease	Illumina [13476299] (imputed)	N
835	chr22	32881745	32881746	rs5754111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q12.3	NR	rs5754111-A	0.600658	2E-189		0.054251	[0.051-0.058] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
835	chr22	32881745	32881746	rs5754111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	22q12.3	NR	rs5754111-G	0.235199	2E-18		0.04243	[0.033-0.052] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
835	chr22	32881745	32881746	rs5754111	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	22q12.3	NR	rs5754111-G	0.235211	4E-17		0.040871	[0.031-0.05] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
835	chr22	32883102	32883103	rs3788449	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q12.3	NR	rs3788449-A	0.602275	5E-157		0.052319	[0.048-0.056] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
835	chr22	32883102	32883103	rs3788449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs3788449-?	NR	1E-141				NR [~ 8900000] (imputed)	N
835	chr22	32883281	32883282	rs3827335	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q12.3	FBXO7	rs3827335-?	NR	2E-14		0.03865	[0.029-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
835	chr22	32887731	32887732	rs17698823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q12.3	NR	rs17698823-T	0.600913	2E-54		0.029314	[0.026-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
835	chr22	32887731	32887732	rs17698823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs17698823-T	0.628409	5E-205				Affymetrix, Illumina [24246363] (imputed)	N
835	chr22	32887731	32887732	rs17698823	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs17698823-T	0.631548	7E-170				Affymetrix, Illumina [20825802] (imputed)	N
835	chr22	32894951	32894956	rs149388997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q12.3		rs149388997-G	NR	5E-34		0.0258	[0.022-0.03] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
835	chr22	32894951	32894956	rs149388997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q12.3	FBXO7	rs149388997-G	0.506481	1E-38		0.029973045	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
835	chr22	32894951	32894956	rs149388997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	FBXO7	rs149388997-G	0.5039	1E-47		0.05345688	[0.046-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
835	chr22	32894951	32894956	rs149388997	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	FBXO7	rs149388997-G	0.5038	1E-43		0.05114488	[0.044-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
835	chr22	32896589	32896590	rs5994578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs5994578-T	0.601829	6E-60				Affymetrix, Illumina [22063850] (imputed)	N
835	chr22	32896589	32896590	rs5994578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q12.3	NR	rs5994578-T	0.601343	6E-63		0.033155	[0.029-0.037] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
835	chr22	32896589	32896590	rs5994578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.3	FBXO7	rs5994578-T	0.6018	7E-21		0.0338412	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
835	chr22	32896796	32896797	rs5994579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q12.3		rs5994579-A	NR	3E-112		0.0477	[0.044-0.052] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
835	chr22	32899044	32899045	rs5998517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.3	FBXO7	rs5998517-C	0.598977	2E-51		0.03785077	[0.033-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
835	chr22	32899044	32899045	rs5998517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q12.3	FBXO7	rs5998517-C	0.5986	1E-13		0.02700554	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
836	chr22	32899148	32899149	rs5998519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q12.3		rs5998519-T	NR	3E-111		0.0482	[0.044-0.052] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
836	chr22	32899515	32899516	rs9606967	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	22q12.3	AK123891, SYN3	rs9606967-C	0.2061	4E-9		5.866	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
836	chr22	32899857	32899858	rs5754120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3		rs5754120-C	0.607055	2E-51		0.037485752	[0.033-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr22	32899857	32899858	rs5754120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3		rs5754120-C	0.60693	3E-69		0.0557913	[0.052-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
836	chr22	32899857	32899858	rs5754120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.3		rs5754120-?	NR	4E-57				NR [~ 8900000] (imputed)	N
836	chr22	32899857	32899858	rs5754120	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.3	AK123891	rs5754120-C	NR	1E-19		0.0367385	[0.029-0.045] unit increase	Affymetrix [16832071] (imputed)	N
836	chr22	32900215	32900216	rs5998521	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs5998521-G	NR	2E-12		0.26	[0.18-0.34] unit decrease	Illumina [97506867]	N
836	chr22	32900215	32900216	rs5998521	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs5998521-G	NR	1E-10		0.09	[0.07-0.11] unit decrease	Illumina [94681438]	N
836	chr22	32900526	32900527	rs9606973	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q12.3	BPIFC, FBXO7, SYN3	rs9606973-?		6E-13				Affymetrix, Illumina [NR] (imputed)	N
836	chr22	32902345	32902346	rs28874286	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	NR	rs28874286-T	0.165	7E-41	(Ribonucleoside-diphosphate reductase large subunit, RRM1.11360.39.3)	0.51	[0.43-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
836	chr22	32902402	32902403	rs28874975	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	intergenic	rs28874975-A	0.1988	3E-38		0.05863766	[0.05-0.068] unit decrease	Affymetrix [~ 2500000] (imputed)	N
836	chr22	32902402	32902403	rs28874975	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	intergenic	rs28874975-A	0.1987	1E-35		0.05667135	[0.048-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
836	chr22	32929151	32929152	rs13055961	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	22q12.3	NR	rs13055961-A	NR	1E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
836	chr22	32950968	32950969	rs2710383	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	22q12.3	SYN3	rs2710383-?	0.88	5E-7	(EA)	1.4492754	[NR]	Affymetrix, Illumina [10973920] (imputed)	N
836	chr22	32950968	32950969	rs2710383	30988330	Hellwege JN	2019-04-15	Sci Rep	Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.	Benign prostatic hyperplasia	2,258 European ancestry cases, 398 African and unknown ancestry cases, 6,599 European ancestry controls, 1,164 African and unknown ancestry controls	NA	22q12.3	SYN3	rs2710383-?	0.88	5E-7		1.4492754	[1.2-1.82]	Affymetrix, Illumina [10973920] (imputed)	N
836	chr22	32961907	32961908	rs9609595	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	22q12.3		rs9609595-?	NR	2E-8				Affymetrix [NR] (imputed)	N
836	chr22	32961943	32961944	rs9609596	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	22q12.3		rs9609596-?	NR	4E-8				Affymetrix [NR] (imputed)	N
836	chr22	32963045	32963046	rs9609597	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		22q12.3	NR	rs9609597-A	NR	6E-6		0.856133	[0.49-1.23] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
836	chr22	33006362	33006363	rs28835002	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.3		rs28835002-?	NR	2E-10				NR [~ 8900000] (imputed)	N
837	chr22	33046535	33046536	rs4373007	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.3		rs4373007-?	NR	3E-38				NR [~ 8900000] (imputed)	N
837	chr22	33048038	33048039	rs80186738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.3	NR	rs80186738-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
837	chr22	33048411	33048439	rs139285425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	22q12.3		rs139285425-A	0.690208	9E-36		0.0274157	[0.023-0.032] unit decrease	Illumina [13479295] (imputed)	N
837	chr22	33056340	33056341	rs4821083	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	22q12.3	NR	rs4821083-?	NR	6E-7		0.02994356	[0.018-0.042] unit decrease	Illumina [34656550] (imputed)	N
837	chr22	33056340	33056341	rs4821083	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	22q12.3	SYN3	rs4821083-T	0.31	2E-7		0.03	[0.016-0.044] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
837	chr22	33056340	33056341	rs4821083	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	22q12.3	SYN3	rs4821083-T	0.84	3E-10		0.031	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
837	chr22	33056858	33056859	rs2413143	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	22q12.3	SYN3	rs2413143-T	0.159	2E-17		0.034	[0.026-0.042] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
837	chr22	33058601	33058602	rs5749481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q12.3		rs5749481-A	NR	2E-55		0.0257	[0.023-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
837	chr22	33059664	33059665	rs5749482	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	22q12.3	TIMP3	rs5749482-G	0.74	2E-26		1.31	[1.26-1.36]	Affymetrix, Illumina [2442884] (imputed)	N
837	chr22	33059664	33059665	rs5749482	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	22q12.3	SYN3	rs5749482-C	0.44	5E-7		0.04	[0.024-0.056] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
837	chr22	33062230	33062231	rs5754198	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	22q12.3	NR	rs5754198-G		3E-9		0.21	[0.13-0.29] unit increase	NR [NR]	N
837	chr22	33062230	33062231	rs5754198	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q12.3	SYN3	rs5754198-G	0.9525	2E-12		0.2368	[0.17-0.3] unit increase	Affymetrix [~ 11900000] (imputed)	N
837	chr22	33084235	33084236	rs16990993	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	22q12.3	SYN3	rs16990993-T	0.02	5E-6		0.3	unit increase	Affymetrix [5396780] (imputed)	N
837	chr22	33084344	33084345	rs3788483	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	22q12.3	Z73979.2	rs3788483-C	0.31	5E-6		0.164	[0.093-0.235] unit increase	Affymetrix [2366856] (imputed)	N
837	chr22	33084510	33084511	rs9621532	21665990	Yu Y	2011-06-10	Hum Mol Genet	Common variants near FRK/COL10A1 and VEGFA are associated with advanced age-related macular degeneration.	Age-related macular degeneration	2,594 European ancestry cases, 4,134 European ancestry controls	5,640 European ancestry cases, 52,174 European ancestry controls	22q12.3	TIMP3	rs9621532-?	0.95	2E-15		1.59	[NR]	Affymetrix [6036699] (imputed)	N
837	chr22	33084510	33084511	rs9621532	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	22q12.3	TIMP3	rs9621532-A	0.96	4E-9		1.61	[1.37-1.89]	Affymetrix [632932]	N
837	chr22	33084510	33084511	rs9621532	20385819	Chen W	2010-04-12	Proc Natl Acad Sci U S A	Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.	Age-related macular degeneration	2,157 European ancestry cases, 1,150 European ancestry controls	7,892 European ancestry cases, 5,998 European ancestry controls, 678 Japanese ancestry cases, 336 Japanese ancestry controls	22q12.3	TIMP3, SYN3	rs9621532-A	0.946	1E-11	(EA)	1.41	[1.27-1.57]	Illumina [~ 2500000] (imputed)	N
837	chr22	33103454	33103455	rs5754221	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q12.3	SYN3	rs5754221-T	0.9503	4E-11		0.213	[0.15-0.28] unit increase	Affymetrix [~ 11900000] (imputed)	N
837	chr22	33105226	33105227	rs756481	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	22q12.3	SYN3	rs756481-A	0.95	3E-12				Affymetrix, Illumina [8002429] (imputed)	N
837	chr22	33105226	33105227	rs756481	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	22q12.3	SYN3	rs756481-?	NR	3E-12		0.2074	[0.15-0.27] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
837	chr22	33105226	33105227	rs756481	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	22q12.3	SYN3	rs756481-A	0.952	1E-10		0.192	[0.13-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
837	chr22	33105816	33105817	rs5754227	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	22q12.3	SYN3, TIMP3	rs5754227-?	NR	1E-24	(EA)	1.2987013		Illumina [12023830] (imputed)	N
837	chr22	33127480	33127481	rs3788488	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		22q12.3	NR	rs3788488-C	0.27151	2E-6		0.056996	[0.034-0.08] unit decrease	Affymetrix [14134301] (imputed)	N
837	chr22	33136067	33136068	rs150551568	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	22q12.3	SYN3	rs150551568-?		3E-6	(French Canadians)	4.0427074		Illumina [7614484] (imputed)	N
837	chr22	33147525	33147526	rs5754249	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3	rs5754249-G	0.4327984	2E-13	(EA, Metalloproteinase inhibitor 3)	0.3203	[0.24-0.4] unit increase	Affymetrix [509946]	N
837	chr22	33156342	33156343	rs73156468	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.3	SYN3	rs73156468-G	0.861522	5E-12		0.0184606	[0.013-0.024] unit increase	NR [13737936] (imputed)	N
837	chr22	33156342	33156343	rs73156468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.3		rs73156468-?	NR	2E-11				NR [~ 8900000] (imputed)	N
837	chr22	33159091	33159092	rs4821097	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	TIMP 3 plasma levels	400 French ancestry individuals	NA	22q12.3		rs4821097-G	NR	9E-20		0.525	[0.46-0.59] ng/mL increase	Illumina [5201092] (imputed)	N
837	chr22	33159091	33159092	rs4821097	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MMRN2	5,360 Icelandic ancestry individuals	NA	22q12.3		rs4821097-A	0.2246	5E-48		0.320153	[0.28-0.36] unit increase	Illumina [7506463] (imputed)	N
837	chr22	33159919	33159921	rs59896920	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	SYN3	rs59896920-G	0.712	3E-12	(Multimerin-2, MMRN2.9723.105.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
837	chr22	33160396	33160397	rs3788504	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3	rs3788504-T	0.1177062	4E-11	(EA, Metalloproteinase inhibitor 3)	0.4544	[0.32-0.59] unit decrease	Affymetrix [509946]	N
838	chr22	33161551	33161552	rs1079734	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP4	5,368 Icelandic ancestry individuals	NA	22q12.3		rs1079734-G	0.3682	2E-29		0.206553	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
838	chr22	33161551	33161552	rs1079734	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	NR	rs1079734-A	0.6325	4E-22	(MMRN2, 9723_105_3)	0.24482626	[0.2-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
838	chr22	33161551	33161552	rs1079734	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	NR	rs1079734-A	0.6325	3E-18	(TIMP4, 6462_12_3)	0.2088177	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
838	chr22	33161551	33161552	rs1079734	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	NR	rs1079734-A	0.6325	2E-392	(TIMP3, 2480_58_3)	0.9430663	[0.91-0.98] unit decrease	Illumina [> 1000000] (imputed)	N
838	chr22	33165019	33165020	rs2097326	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3	rs2097326-G	0.2787298	4E-97	(Metalloproteinase inhibitor 3)	0.9307	[0.85-1.01] unit increase	Affymetrix [509946]	N
838	chr22	33166226	33166227	rs4821102	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	22q12.3	NR	rs4821102-?	NR	2E-8	(TIMP-3)			Illumina [~ 4000000] (imputed)	N
838	chr22	33167868	33167869	rs2413151	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	NR	rs2413151-?	NR	6E-100	(EA, Metalloproteinase inhibitor 3)			Affymetrix [509946]	N
838	chr22	33170100	33170101	rs135150	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3, LL22NC01-116C6.1	rs135150-C	0.1484453	4E-18	(EA, Metalloproteinase inhibitor 3)	0.5332	[0.41-0.65] unit increase	Affymetrix [509946]	N
838	chr22	33172004	33172005	rs5754266	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3	rs5754266-T	0.1722054	1E-13	(EA, Metalloproteinase inhibitor 3)	0.4177	[0.31-0.53] unit decrease	Affymetrix [509946]	N
838	chr22	33174765	33174766	rs8142758	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP3	5,368 Icelandic ancestry individuals	NA	22q12.3		rs8142758-G	0.1591	2E-18		0.22453	[0.17-0.27] unit increase	Illumina [7506463] (imputed)	N
838	chr22	33174980	33174981	rs8142064	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.3		rs8142064-?	NR	2E-12		0.0210513	[0.015-0.027] unit increase	Affymetrix [20259828] (imputed)	N
838	chr22	33177389	33177390	rs5754283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.3		rs5754283-?	NR	2E-9				NR [~ 8900000] (imputed)	N
838	chr22	33183788	33183789	rs130555	24487271	Weizman A	2014-03-01	Inflamm Bowel Dis	Clinical, serologic, and genetic factors associated with pyoderma gangrenosum and erythema nodosum in inflammatory bowel disease patients.	Pyoderma gangrenosum in inflammatory bowel disease	92 European ancestry cases, 5,664 European ancestry controls	NA	22q12.3	TIMP3	rs130555-C	NR	6E-7		2.5	[1.70-3.50]	Illumina [2017629] (imputed)	N
838	chr22	33202477	33202478	rs135025	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	22q12.3	NR	rs135025-A	0.4414	1E-10		1.08	[1.05-1.1]	Affymetrix, Illumina [7072771] (imputed)	N
838	chr22	33242161	33242162	rs241890	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	22q12.3	SYN3, RP1-309I22.2, TIMP3	rs241890-T	0.193662	3E-20	(Metalloproteinase inhibitor 3)	0.4995	[0.4-0.6] unit decrease	Affymetrix [509946]	N
838	chr22	33258287	33258288	rs1065314	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Triglyceride levels	4,659 Korean ancestry females	5,273 Korean ancestry females	22q12.3	SYN3, TIMP3	rs1065314-C	0.064605	2E-7		14.5805	[9.05-20.11] unit increase	Affymetrix [NR] (imputed)	N
839	chr22	33335385	33335386	rs73158393	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	22q12.3	SYN3	rs73158393-C	0.74	8E-9		1.07	[1.05-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
839	chr22	33335385	33335386	rs73158393	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.3		rs73158393-?	NR	3E-21				NR [~ 8900000] (imputed)	N
839	chr22	33344270	33344271	rs145286089	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	22q12.3	SYN3	rs145286089-G	NR	9E-8		0.62	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
839	chr22	33344270	33344271	rs145286089	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	22q12.3	SYN3	rs145286089-G	NR	6E-7				Affymetrix, Illumina [12061510] (imputed)	N
840	chr22	33434835	33434836	rs1894536	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.3	TIMP3	rs1894536-?	NR	4E-6	(TAG 56:4)	0.1643882	[0.095-0.234] unit increase	Affymetrix [at least 2500000] (imputed)	N
840	chr22	33489110	33489111	rs143863913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	22q12.3	Intergenic	rs143863913-T	0.036	5E-6		0.035	NR unit decrease	Illumina [NR] (imputed)	N
840	chr22	33489110	33489111	rs143863913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	22q12.3	Intergenic	rs143863913-T	0.036	4E-6		0.145	NR unit decrease	Illumina [NR] (imputed)	N
841	chr22	33561745	33561746	rs743793	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	22q12.3	LARGE	rs743793-T	0.54	6E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
841	chr22	33566586	33566587	rs4821132	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	22q12.3	LARGE	rs4821132-C	0.56	6E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
841	chr22	33574366	33574367	rs7290315	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.3	SYN3	rs7290315-?	NR	8E-6	(quinolinic acid)	0.22900543	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
841	chr22	33585147	33585148	rs139509979	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q12.3	Intergenic	rs139509979-G	0.999	5E-6	(AA)	0.41	unit increase	Illumina [NR] (imputed)	N
842	chr22	33746525	33746526	rs2267193	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	22q12.3	LARGE	rs2267193-C	0.28	8E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
842	chr22	33812861	33812862	rs138584487	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	22q12.3	LARGE	rs138584487-G	NR	4E-8		0.906	[0.58-1.23] unit decrease	Illumina [27700000] (imputed)	N
843	chr22	33824446	33824447	rs9607045	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	22q12.3	NR	rs9607045-?		5E-6		0.3586	[-0.08181-0.79901]	NR [NR] (imputed)	N
843	chr22	33825467	33825468	rs149318287	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q12.3	LARGE	rs149318287-A	0.995	2E-6	(AA)	0.65	NR unit increase	Illumina [NR] (imputed)	N
843	chr22	33827477	33827478	rs150663730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q12.3	LARGE	rs150663730-A	0.995	2E-6	(AA)	0.607	NR unit increase	Illumina [NR] (imputed)	N
843	chr22	33867463	33867464	rs9621705	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs9621705-?	NR	6E-7				Affymetrix [NR]	N
843	chr22	33907963	33907964	rs1540299	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.3	Intergenic	rs1540299-A	0.4485	3E-10	(MTAG)	0.0083	[0.0058-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
843	chr22	33910735	33910736	rs5754581	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.3		rs5754581-T	0.5542	6E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
844	chr22	34078056	34078057	rs5754638	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	22q12.3	NR	rs5754638-T	0.11	8E-6		1.44	[1.28-1.60]	Illumina [4058415] (imputed)	N
845	chr22	34082545	34082546	rs484115	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	22q12.3	NR	rs484115-G	NR	7E-6		0.1222	[0.069-0.176] SD units decrease	NR [10700000] (imputed)	N
845	chr22	34087491	34087492	rs184753582	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	22q12.3	NR	rs184753582-T	0.01009	4E-7		0.7733	[0.48-1.07] unit decrease	Illumina [10677593] (imputed)	N
845	chr22	34157525	34157526	rs16992986	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	22q12.3	NR	rs16992986-?	0.1159	3E-6		0.054526	[0.032-0.077] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
845	chr22	34174793	34174794	rs619426	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	22q12.3	LARGE	rs619426-?	0.468888	4E-6		1.276973	[1.151436-1.416198]	Affymetrix, Illumina [NR] (imputed)	N
845	chr22	34182888	34182889	rs1811103	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	22q12.3	NR	rs1811103-A	NR	8E-6		0.039	[0.023-0.055] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
845	chr22	34202283	34202284	rs5754682	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	22q12.3	LARGE	rs5754682-T	0.873545	1E-6		0.0421	[0.024-0.06] unit decrease	Illumina [1220000] (imputed)	N
846	chr22	34219166	34219167	rs5754701	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	22q12.3	LARGE	rs5754701-?	NR	7E-7		4.963	NR unit decrease	Illumina [up to 1520000] (imputed)	N
846	chr22	34229104	34229105	rs5749679	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	22q12.3	NR	rs5749679-T	NR	1E-7		0.8174	[NR]	Illumina [4867007] (imputed)	N
846	chr22	34229951	34229952	rs5754712	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	22q12.3	NR	rs5754712-G	0.810297076816092	4E-8		0.006452009	[0.0042-0.0087] unit decrease	NR [NR]	N
846	chr22	34229951	34229952	rs5754712	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	22q12.3	NR	rs5754712-G	0.810297076816092	3E-8		0.010556884	[0.0068-0.0143] unit decrease	NR [NR]	N
846	chr22	34229951	34229952	rs5754712	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	22q12.3	NR	rs5754712-G	0.810297076816092	4E-8		0.006682872	[0.0043-0.0091] unit decrease	NR [NR]	N
846	chr22	34264837	34264838	rs999719	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	22q12.3	LARGE	rs999719-T	NR	5E-6		0.4442	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
846	chr22	34265795	34265796	rs12485060	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q12.3	LARGE	rs12485060-T	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
846	chr22	34269456	34269457	rs117451620	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	22q12.3	LARGE	rs117451620-A	0.011	2E-7	(ACE inhibitors and diuretics [C09BA])	7.4		Illumina [16500000] (imputed)	N
846	chr22	34269593	34269594	rs5754733	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	22q12.3	NR	rs5754733-C	NR	1E-6		0.1042	[0.062-0.146] SD units increase	NR [10700000] (imputed)	N
846	chr22	34271688	34271689	rs73154546	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.3		rs73154546-A	0.0401	5E-8		0.0197	[0.013-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
846	chr22	34273864	34273865	rs13054775	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	LARGE	rs13054775-G	0.4628125	1E-6	(LARGE, 7935_26_3)	0.12329762	[0.073-0.173] unit increase	Illumina [> 1000000] (imputed)	N
846	chr22	34280248	34280249	rs5754738	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	22q12.3	LARGE	rs5754738-G	0.2847	7E-9		0.012859584	[0.0085-0.0172] unit decrease	Affymetrix [up to 18485882] (imputed)	N
846	chr22	34280248	34280249	rs5754738	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.3		rs5754738-A	0.2863	1E-15	(conditional-joint)	0.0124	[0.0093-0.0155] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
846	chr22	34296750	34296751	rs5754753	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q12.3		rs5754753-?	NR	3E-8				NR [~ 8900000] (imputed)	N
846	chr22	34296750	34296751	rs5754753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q12.3	Intergenic	rs5754753-T	0.7222	2E-12	(MTAG)	0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
846	chr22	34296750	34296751	rs5754753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.3		rs5754753-T	0.7178	6E-16		0.0126	[0.0095-0.0157] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
846	chr22	34296750	34296751	rs5754753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q12.3	Intergenic	rs5754753-T	0.7178	3E-17	(MTAG)	0.0123	[0.0094-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
846	chr22	34307850	34307851	rs16993271	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	22q12.3	LARGE	rs16993271-G	0.96	7E-6	(women)	0.176	[0.1-0.252] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
846	chr22	34322069	34322070	rs188523894	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	22q12.3	NR	rs188523894-G		7E-6		0.3888	[0.22-0.56] SD units decrease	NR [10700000] (imputed)	N
846	chr22	34328331	34328332	rs2005638	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	22q12.3	LARGE	rs2005638-A	0.1933	3E-8		0.014138129	[0.0091-0.0192] unit decrease	Affymetrix [up to 18485882] (imputed)	N
846	chr22	34328389	34328390	rs5749697	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q12.3	Intergenic	rs5749697-A	0.0739	6E-10	(MTAG)	0.0271	[0.018-0.036] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
846	chr22	34329223	34329224	rs5754762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q12.3		rs5754762-A	0.9405	3E-11		0.0197	[0.014-0.026] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
846	chr22	34329602	34329603	rs35532491	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	22q12.3	NR	rs35532491-A	0.8986	7E-9		0.021829179	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
846	chr22	34337382	34337383	rs11703032	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q12.3	LARGE	rs11703032-T	NR	1E-8		0.028063327	[0.018-0.038] unit increase	Affymetrix [NR]	N
847	chr22	34343696	34343697	rs16993330	29926116	Grarup N	2018-06-20	Diabetologia	Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.	Type 2 diabetes	317 Greenlandic ancestry cases, 2,631 Greenlandic ancestry controls	NA	22q12.3	LARGE1	rs16993330-A	0.16	1E-7		3.52		Illumina [115182]	N
847	chr22	34347558	34347559	rs130516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q12.3	Intergenic	rs130516-A	0.2391	3E-8	(MTAG)	0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
847	chr22	34386472	34386473	rs7286472	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (cold pressor test)	1,881 Han Chinese ancestry individuals	698 Han Chinese ancestry individuals	22q12.3	LARGE	rs7286472-G	0.02	3E-7	(DBP)	2.25	[1.39-3.11] mmHg decrease	Affymetrix [2216774] (imputed)	N
847	chr22	34423168	34423169	rs242885	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs242885-?	NR	9E-6				Affymetrix [NR]	N
847	chr22	34470166	34470167	rs5754819	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	22q12.3	LARGE	rs5754819-G	NR	7E-6		0.17342511	[0.098-0.249] unit increase	Affymetrix [9576485] (imputed)	N
848	chr22	34498034	34498035	rs61580878	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	22q12.3	LARGE	rs61580878-A	NR	9E-7	(Japanese)	1.19373	[1.11231-1.2811]	Illumina [at least 6195093] (imputed)	N
848	chr22	34503058	34503059	rs242997	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		22q12.3	LARGE1, ISX	rs242997-A	0.613	3E-9		0.084	NR unit decrease	Illumina [2400000] (imputed)	N
848	chr22	34503058	34503059	rs242997	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		22q12.3	LARGE1, ISX	rs242997-A	0.613	2E-6		0.076	NR unit decrease	Illumina [2400000] (imputed)	N
848	chr22	34505902	34505903	rs242999	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	22q12.3	LL22NC03-86D4.1	rs242999-C	0.39	1E-6		1.85	[1.44-2.37]	Affymetrix, Illumina [7000000] (imputed)	N
848	chr22	34538578	34538579	rs5749739	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Diastolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	22q12.3	LL22NC03-86D4.1, LINC01643	rs5749739-?	NR	4E-7		5.076	NR unit increase	Illumina [up to 1520000] (imputed)	N
848	chr22	34545880	34545881	rs113757848	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.3	NR	rs113757848-A	0.01394	3E-8	(CTSB)	0.5167	NR unit increase	Illumina [1671387] (imputed)	N
848	chr22	34546681	34546682	rs5754850	30584014	Huang M	2018-12-12	Neuroimage Clin	Spatial correlations exploitation based on nonlocal voxel-wise GWAS for biomarker detection of AD.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	22q12.3	LL22NC03-86d4.1	rs5754850-?	NR	2E-6	(Gaussian-weighted model)			Illumina [501584]	N
848	chr22	34577490	34577491	rs564027757	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q12.3	NR	rs564027757-?	NR	8E-6		4.466	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
848	chr22	34600838	34600839	rs659457	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q12.3	NR	rs659457-T	0.724	3E-9		0.00711351	[0.0048-0.0095] unit decrease	NR [9732723] (imputed)	N
848	chr22	34602187	34602188	rs5754891	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	22q12.3	LARGE	rs5754891-A	0.7	7E-6	(AA)	0.16	[0.082-0.238] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
849	chr22	34665033	34665034	rs139852892	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 14, intercanthal width)	2,187 European ancestry individuals	NA	22q12.3	NR	rs139852892-A	0.01261	1E-6		0.6596	[0.4-0.92] unit decrease	Illumina [10677593] (imputed)	N
850	chr22	34741042	34741043	rs551760297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q12.3	NR	rs551760297-?	NR	4E-6		4.632	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
850	chr22	34809452	34809453	rs1580226	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	22q12.3	intergenic	rs1580226-?	NR	8E-6		1.2195122	[1.12-1.33]	Illumina [7436415] (imputed)	N
850	chr22	34811837	34811838	rs5755038	31786426	Farias Tempaku P	2019-08-14	Sleep Med	Genome-wide association study reveals two novel risk alleles for incident obstructive sleep apnea in the EPISONO cohort.	Obstructive sleep apnea trait (apnea hypopnea index, change over time)	404 European ancestry individuals, 97 Black individuals, 20 Asian ancestry individuals, 20 Indigenous individuals, 138 mixed race individuals, 27 individuals	NA	22q12.3	NR	rs5755038-T	0.18	7E-6		0.2311	[0.13-0.33] unit increase	Illumina [up to 730525]	N
850	chr22	34813252	34813253	rs1459029	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.3	ISX	rs1459029-?	NR	4E-6	(PC 38:4)	0.17821546	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
850	chr22	34813252	34813253	rs1459029	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q12.3	ISX	rs1459029-?	NR	2E-6	(PC 38:5)	0.18622212	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
850	chr22	34823827	34823828	rs1034394	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	22q12.3	ENOX1	rs1034394-G	0.3390146	2E-6	(% improvement - SSRI treated - 12 weeks)	0.2107	[0.12-0.3] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
850	chr22	34825422	34825423	rs5755044	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	22q12.3		rs5755044-G	0.3125	4E-6		1.406	[1.216-1.626]	Affymetrix [7975321] (imputed)	N
850	chr22	34830602	34830603	rs11089671	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q12.3	NR	rs11089671-?	NR	4E-13				Affymetrix [NR]	N
850	chr22	34859792	34859793	rs130575	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	22q12.3	intergenic	rs130575-?	NR	5E-6	(binary)			Perlegen [429981]	N
851	chr22	34889096	34889097	rs738968	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	22q12.3	LOC441996	rs738968-C		8E-8	(EA)			Illumina [NR]	N
851	chr22	34941575	34941576	rs4821261	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	22q12.3	NR	rs4821261-A	0.132	9E-6	(Illicit drug use)			Illumina [527829]	N
851	chr22	34988593	34988594	rs5994978	31095298	Huang M	2019-05-16	Bioinformatics	Incorporating spatial-anatomical similarity into the VGWAS framework for AD biomarker detection.	Voxel-wise structural brain imaging measurements in Alzheimer's disease	708 European ancestry individuals	NA	22q12.3	intergenic	rs5994978-?	NR	2E-6				Illumina [501584]	N
852	chr22	35014739	35014740	rs5755145	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	22q12.3	intergenic	rs5755145-?	0.2	9E-6	(men)	0.277	NR unit increase	Illumina [628376]	N
853	chr22	35135105	35135106	rs10483182	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (BMI interaction)	16,753 European ancestry individuals	13,354 European ancestry individuals	22q12.3	ISX	rs10483182-A	0.01	8E-12		0.04803	[0.034-0.062] unit increase	Affymetrix, Illumina [up to 2400000] (imputed)	N
853	chr22	35144410	35144411	rs4493363	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	22q12.3	NR	rs4493363-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
853	chr22	35186349	35186350	rs5755279	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	22q12.3	ISX	rs5755279-?	NR	3E-6				Affymetrix [5908111] (imputed)	N
853	chr22	35186349	35186350	rs5755279	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	22q12.3	ISX	rs5755279-?	NR	5E-6				Affymetrix [5908111] (imputed)	N
854	chr22	35292509	35292510	rs137219	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Gamma glutamyl transferase levels	1,577 Mexican American ancestry individuals	NA	22q12.3	intergenic	rs137219-?	NR	4E-6				Illumina [655023]	N
854	chr22	35366229	35366230	rs5755468	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	22q12.3	ISX-AS1	rs5755468-C	NR	4E-6		0.17	[0.092-0.248] unit decrease	Illumina [5918868] (imputed)	N
854	chr22	35371247	35371248	rs9619497	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	22q12.3	intergenic	rs9619497-A		5E-6		0.2273	unit increase	Illumina [5767231] (imputed)	N
856	chr22	35605025	35605026	rs141977720	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	22q12.3	NR	rs141977720-?	NR	3E-8				Illumina [7760689] (imputed)	N
856	chr22	35639191	35639192	rs4820185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q12.3		rs4820185-C	NR	2E-12		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
856	chr22	35642565	35642566	rs5750089	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q12.3		rs5750089-C	NR	2E-14		0.0103	[0.0078-0.0128] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
857	chr22	35652240	35652241	rs2092029	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	22q12.3	HMGXB4, ISX, HMOX1, TOM1, MCM5, MIR3909, RASD2, APOL6, MB, APOL5, RBFOX2	rs2092029-C	0.3262	6E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
857	chr22	35652240	35652241	rs2092029	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	22q12.3	HMGXB4, ISX, HMOX1, TOM1, MCM5, MIR3909, RASD2, APOL6, MB, APOL5, RBFOX2	rs2092029-C	0.32620000000000005	1E-6	(women)	0.0324	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
857	chr22	35652240	35652241	rs2092029	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	22q12.3	HMGXB4	rs2092029-C	0.33	1E-7	(women)	0.028	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
857	chr22	35652694	35652695	rs2413323	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs2413323-T	0.632124	6E-11				Affymetrix, Illumina [24588908] (imputed)	N
857	chr22	35660874	35660875	rs1053593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q12.3		rs1053593-?	NR	9E-11				NR [~ 8900000] (imputed)	N
857	chr22	35660874	35660875	rs1053593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.3		rs1053593-?	NR	4E-17				NR [~ 8900000] (imputed)	N
857	chr22	35660874	35660875	rs1053593	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	22q12.3	NR	rs1053593-G	0.35	5E-14		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
857	chr22	35660874	35660875	rs1053593	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	22q12.3	NR	rs1053593-G	0.35	5E-8				Affymetrix [2446094] (imputed)	N
857	chr22	35660874	35660875	rs1053593	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.3	HMGXB4	rs1053593-T	0.6444	5E-6	(EA, women)	0.0215	[0.012-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
857	chr22	35660874	35660875	rs1053593	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.3	HMGXB4	rs1053593-T	0.632	8E-6	(women)	0.0206	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
857	chr22	35660874	35660875	rs1053593	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.3	HMGXB4	rs1053593-T	0.6446	4E-8	(EA)	0.0207	[0.013-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
857	chr22	35660874	35660875	rs1053593	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	22q12.3	HMGXB4	rs1053593-T	0.6446	2E-9	(EA, women)	0.0285	[0.019-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
857	chr22	35663522	35663523	rs2413338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.3	HMGXB4	rs2413338-C	NR	4E-9		0.018061	[0.012-0.024] unit decrease	Affymetrix [321788] (imputed)	N
857	chr22	35663522	35663523	rs2413338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q12.3	HMGXB4	rs2413338-C	NR	2E-13		0.0216683	[0.016-0.027] unit decrease	Affymetrix [321016] (imputed)	N
857	chr22	35664940	35664941	rs2235148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.3	HMGXB4	rs2235148-C	0.645009	4E-10		0.014723283	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
857	chr22	35666514	35666515	rs738146	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q12.3	NR	rs738146-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
857	chr22	35671554	35671555	rs146695286	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HMGXB4	rs146695286-?	NR	2E-8		2.13315	[NR] unit decrease	Affymetrix [NR] (imputed)	N
857	chr22	35671554	35671555	rs146695286	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		HMGXB4	rs146695286-?	NR	2E-13	(male)	5.67227	[NR] unit decrease	Affymetrix [NR] (imputed)	N
857	chr22	35676138	35676138	rs35288294	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q12.3	NR	rs35288294-C	0.347458	7E-10		0.012491	[0.0085-0.0165] unit increase	Affymetrix [15000001]	N
857	chr22	35678255	35678256	rs2179050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	22q12.3		rs2179050-G	NR	3E-11		0.0152	[0.011-0.02] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
857	chr22	35680094	35680095	rs2272790	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	22q12.3	NR	rs2272790-A	0.6941	8E-12		0.0133	[0.0096-0.017] unit decrease	NR [~ 27400000] (imputed)	N
857	chr22	35696930	35696931	rs138730	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	22q12.3	TOM1	rs138730-?	NR	6E-9		0.0163	[0.011-0.021] unit increase	Affymetrix [5701386] (imputed)	N
857	chr22	35698455	35698456	rs138737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	22q12.3		rs138737-A	NR	2E-8		0.0369	[0.024-0.05] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
857	chr22	35698455	35698456	rs138737	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	22q12.3	NR	rs138737-?	NR	2E-7				Illumina [at least 7383741] (imputed)	N
857	chr22	35699581	35699582	rs138740	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	22q12.3	TOM1	rs138740-C	0.415	3E-7		1.16	[1.10-1.23]	Illumina [12100000] (imputed)	N
857	chr22	35699581	35699582	rs138740	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	22q12.3	TOM1	rs138740-C	0.415	6E-8		1.18	[1.11-1.25]	Illumina [12100000] (imputed)	N
857	chr22	35700487	35700488	rs138747	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	22q12.3	NR	rs138747-A		3E-8		1.21	[1.13-1.30]	Illumina [at least 7182761] (imputed)	N
857	chr22	35700766	35700767	rs138750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q12.3		rs138750-?	NR	8E-12				NR [~ 8900000] (imputed)	N
857	chr22	35705358	35705359	rs138771	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q12.3	NR	rs138771-G	0.6895	4E-9		0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
857	chr22	35711097	35711098	rs138777	29404214	Andaleon A	2018-01-29	PeerJ	Gene-based association study for lipid traits in diverse cohorts implicates BACE1 and SIDT2 regulation in triglyceride levels.	HDL cholesterol	1,017 Yoruban ancestry individuals, 1,765 Filipino ancestry individuals	NA	22q12.3	TOM1	rs138777-G	0.591	2E-6	(Filipino)	0.175	[0.10-0.25] unit increase	Affymetrix, Illumina [up to 12553142] (imputed)	N
857	chr22	35711097	35711098	rs138777	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	22q12.3	TOM1	rs138777-A	0.348	2E-8	(Trans-ethnic initial)	0.0214	[0.014-0.029] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
857	chr22	35711097	35711098	rs138777	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	22q12.3	TOM1	rs138777-A	0.36	5E-8		0.021	[NR] unit increase	NR [NR] (imputed)	N
857	chr22	35713786	35713787	rs150310295	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	22q12.3	TOM1	rs150310295-T	0.02	4E-7	(African American)	1.04	[0.63-1.45] unit increase	Illumina [up to 13042663] (imputed)	N
857	chr22	35729720	35729721	rs138788	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	22q12.3	TOM1	rs138788-A	0.418	3E-8		1.09	[1.06-1.13]	Illumina [9578670] (imputed)	N
857	chr22	35729720	35729721	rs138788	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	22q12.3	TOM1	rs138788-?		8E-6				Illumina [9725440] (imputed)	N
857	chr22	35730084	35730085	rs138789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	22q12.3	TOM1	rs138789-A	NR	2E-8		0.0173814	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
857	chr22	35730084	35730085	rs138789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q12.3	TOM1	rs138789-A	NR	1E-10		0.0191487	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
857	chr22	35754412	35754413	rs5755703	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking cessation	366 Bangladeshi ancestry former smoker males, 87 Bangladeshi ancestry former smoker females, 1,471 Bangladeshi ancestry current smoker males, 111 Bangladeshi ancestry current smoker females	NA	22q12.3	NR	rs5755703-?		4E-6				Illumina [1211988] (imputed)	N
857	chr22	35755769	35755770	rs5845222	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	22q12.3	TOM1, HMOX1	rs5845222-T	0.437	2E-6	(statin-free)	0.048	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
857	chr22	35755769	35755770	rs5845222	29748315	Pott J	2018-05-01	Circ Genom Precis Med	Genetic Regulation of PCSK9 (Proprotein Convertase Subtilisin/Kexin Type 9) Plasma Levels and Its Impact on Atherosclerotic Vascular Disease Phenotypes.	Plasma proprotein convertase subtilisin/kexin type 9 levels in stable coronary artery disease	2,022 European ancestry individuals without statin treatment, 1,268 European ancestry individuals with statin treatment	NR	22q12.3	TOM1, HMOX1	rs5845222-T	0.435	6E-7		0.04	[NR] unit decrease	Affymetrix [9882017] (imputed)	N
857	chr22	35759964	35759965	rs372767202	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	22q12.3	TOM1	rs372767202-?	NR	9E-6	(AA)	21.35485	[11.94-30.77] unit increase	Illumina [31978362] (imputed)	N
857	chr22	35759964	35759965	rs372767202	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	High density lipoprotein cholesterol levels	10,085 African American individuals, 17,751 Hispanic/Latino individuals, 2,378 Asian ancestry individuals, 1,912 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 333 individuals	NA	22q12.3	TOM1	rs372767202-?	NR	4E-8		12.314	[7.91-16.72] unit increase	Illumina [31978362] (imputed)	N
857	chr22	35777617	35777618	rs2071748	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q12.3	HMOX1	rs2071748-A	0.273	3E-6	(HRmax )	0.05	[NR] bpm increase	Illumina [899892]	N
858	chr22	35817256	35817257	rs2071743	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in mild cognitive impairment	581 European ancestry mild cognitive impairment cases	NA	22q12.3	TOM1, MIR3909, HMOX1, RASD2	rs2071743-A	0.098	2E-7		0.52	[0.32-0.72] unit decrease	Illumina [7938386] (imputed)	N
858	chr22	35846167	35846168	rs28459838	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q12.3	MCM5, RASD2	rs28459838-T	0.2369	1E-9		1.0269569		Affymetrix [11880941] (imputed)	N
858	chr22	35847287	35847288	rs28580373	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q12.3		rs28580373-A	0.2317	3E-8		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
858	chr22	35880608	35880609	rs28528287	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q12.3	NR	rs28528287-A	0.33574	2E-9		0.0198296	[0.013-0.026] unit increase	NR [19129689] (imputed)	N
859	chr22	35934613	35934614	rs13053308	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q12.3	RASD2	rs13053308-A	NR	3E-9		0.018280681	[0.012-0.024] unit increase	Affymetrix [NR]	N
859	chr22	36007420	36007421	rs5750131	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	22q12.3	NR	rs5750131-G	0.615861	5E-8		0.00678336	[0.0043-0.0093] unit increase	Affymetrix [16585854] (imputed)	N
859	chr22	36009603	36009604	rs191233661	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q12.3		rs191233661-A	0.01396	4E-8		0.5791	[0.37-0.79] unit increase	Illumina [18238311] (imputed)	N
859	chr22	36012863	36012864	rs5755799	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	22q12.3	MB	rs5755799-?	NR	2E-8		0.0148	[0.01-0.02] unit increase	Affymetrix [5701386] (imputed)	N
859	chr22	36042985	36042986	rs9610329	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	22q12.3		rs9610329-T	NR	9E-9		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
859	chr22	36042985	36042986	rs9610329	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q12.3	APOL6	rs9610329-C	0.572319	2E-11		0.0138275	[0.0098-0.0179] unit decrease	Affymetrix [NR] (imputed)	N
859	chr22	36042985	36042986	rs9610329	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q12.3	APOL6	rs9610329-C	0.572465	2E-8		0.0111279	[0.0073-0.015] unit increase	Affymetrix [NR] (imputed)	N
859	chr22	36042985	36042986	rs9610329	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q12.3	NR	rs9610329-C	0.572154	8E-13		0.00623496	[0.0045-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
859	chr22	36042985	36042986	rs9610329	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q12.3	NR	rs9610329-C	0.572154	7E-9		0.00555457	[0.0037-0.0074] unit increase	Affymetrix [16582965] (imputed)	N
860	chr22	36125263	36125264	rs2016586	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	22q12.3	APOL5	rs2016586-?	NR	3E-6		4.67	[NR] z score decrease	Affymetrix, Illumina [up to 583824] (imputed)	N
860	chr22	36130553	36130554	rs2024641	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	22q12.3	NR	rs2024641-?	NR	2E-7		0.0175	[0.011-0.024] unit decrease	Illumina [~ 7800000] (imputed)	N
860	chr22	36166492	36166493	rs5755943	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q12.3	NR	rs5755943-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
861	chr22	36226515	36226516	rs5750184	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q12.3	Intergenic	rs5750184-G	0.9565	6E-9		0.0279	[0.018-0.037] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
861	chr22	36255928	36255929	rs150801052	30116032	Erlangsen A	2018-08-16	Mol Psychiatry	Genetics of suicide attempts in individuals with and without mental disorders: a population-based genome-wide association study.	Suicide attempts	6,024 European ancestry cases, 44,240 European ancestry controls	NA	22q12.3	Intergenic	rs150801052-A	0.9833	7E-7	(model 1)	1.5076	[1.19-1.82]	Illumina [11601089] (imputed)	N
861	chr22	36298861	36298862	rs112059289	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	22q12.3	NR	rs112059289-?	NR	7E-6		0.10177	[0.057-0.146] unit decrease	Affymetrix [9658292] (imputed)	N
862	chr22	36309552	36309553	rs5995177	25065397	Gialluisi A	2014-07-28	Genes Brain Behav	Genome-wide screening for DNA variants associated with reading and language traits.	Reading disability or specific language impairment (pleiotropy)	548 children from 288 families, 749 children from 343 unrelated twinships/sibliships, 959 children	NA	22q12.3	RBFOX2	rs5995177-A	0.08049	5E-7		5.026	z score decrease	Illumina [at least 6190549] (imputed)	N
862	chr22	36425022	36425023	rs147428040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q12.3		rs147428040-A	NR	4E-8		0.033	[0.021-0.045] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
862	chr22	36425022	36425023	rs147428040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	RBFOX2	rs147428040-A	0.042369	4E-17		0.048569147	[0.037-0.06] unit increase	Affymetrix [93095623] (imputed)	N
862	chr22	36425022	36425023	rs147428040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	RBFOX2	rs147428040-A	0.0423480000000001	1E-18		0.0493457	[0.039-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr22	36425022	36425023	rs147428040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	RBFOX2	rs147428040-A	0.0423519999999999	9E-17		0.0475357	[0.036-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
862	chr22	36425022	36425023	rs147428040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs147428040-G	0.953865	1E-20				Affymetrix, Illumina [22063850] (imputed)	N
862	chr22	36425022	36425023	rs147428040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.3		rs147428040-?	NR	2E-21				NR [~ 8900000] (imputed)	N
862	chr22	36425022	36425023	rs147428040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs147428040-?	NR	3E-13				NR [~ 8900000] (imputed)	N
863	chr22	36476761	36476762	rs9610387	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	22q12.3	RBFOX2	rs9610387-G	0.914436	4E-8		0.0137993	[0.0089-0.0187] unit increase	Affymetrix [12370749]	N
863	chr22	36490484	36490485	rs4369966	31241743	Jaeger M	2019-04-24	J Infect Dis	A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.	Candidemia	161 European ancestry cases, 152 European ancestry controls	NA	22q12.3	NR	rs4369966-G	0.38	8E-6		2.24	[NR]	Illumina [5326313] (imputed)	N
863	chr22	36503139	36503140	rs150220651	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	22q12.3	NR	rs150220651-?	NR	2E-9				Illumina [7760689] (imputed)	N
863	chr22	36517931	36517932	rs1476029	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel + carboplatin)	150 Japanese ancestry cases, 166 Japanese ancestry controls	NA	22q12.3	APOL3	rs1476029-A	0.015	8E-6	(Allelic model)	6.426	[2.429-17.00]	Illumina [733202]	N
863	chr22	36527966	36527967	rs5756080	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	22q12.3		rs5756080-?	0.2567	1E-8		0.009205	unit decrease	NR [6200000] (imputed)	N
863	chr22	36539803	36539804	rs80576	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	22q12.3	APOL3	rs80576-A	0.1592	1E-10		0.0028	[0.0018-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
863	chr22	36539803	36539804	rs80576	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	22q12.3	APOL3	rs80576-A	0.1625	3E-10		0.0027	[0.0017-0.0037] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
863	chr22	36541724	36541725	rs1807672	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q12.3	APOL3	rs1807672-?		7E-6				Illumina [4322238] (imputed)	N
863	chr22	36542193	36542194	rs132631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q12.3		rs132631-C	NR	6E-43		0.0406	[0.035-0.046] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
863	chr22	36542193	36542194	rs132631	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	22q12.3	APOL3	rs132631-A	0.167299	7E-60		0.00854387	[0.0075-0.0096] unit decrease	Affymetrix [13995440] (imputed)	N
863	chr22	36543897	36543898	rs132639	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q12.3		rs132639-T	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
863	chr22	36544728	36544729	rs132641	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	22q12.3		rs132641-G	NR	4E-19		0.0271	[0.021-0.033] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
863	chr22	36545136	36545137	rs132642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	22q12.3	APOL3	rs132642-T	0.83	9E-15		7.75	z-score increase	Affymetrix [4311822] (imputed)	N
863	chr22	36545136	36545137	rs132642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	22q12.3	APOL3	rs132642-T	0.83	8E-14		7.47	z-score increase	Affymetrix [4314223] (imputed)	N
863	chr22	36545136	36545137	rs132642	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q12.3	APOL3	rs132642-T	0.83	6E-34		12.2	z-score increase	Affymetrix [4312306] (imputed)	N
863	chr22	36545825	36545826	rs132644	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q12.3		rs132644-?	NR	3E-8				NR [~ 8900000] (imputed)	N
863	chr22	36548405	36548406	rs132645	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	22q12.3	APOL3	rs132645-?	NR	2E-23		0.0033	[0.0025-0.0041] unit decrease	Affymetrix [21347608] (imputed)	N
863	chr22	36548405	36548406	rs132645	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	22q12.3	APOL3	rs132645-?	NR	4E-57		0.0081	[0.0069-0.0093] unit decrease	Affymetrix [21347608] (imputed)	N
863	chr22	36555793	36555794	rs80584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q12.3		rs80584-T	NR	4E-20		0.0279	[0.022-0.034] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	3E-20		0.0284	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	2E-9		0.0186	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	1E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	1E-28		0.0343	[0.028-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	4E-14		0.0233	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
863	chr22	36556822	36556823	rs132653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q12.3	NR	rs132653-T	NR	2E-36		0.0388	[0.033-0.045] unit increase	Affymetrix [9000000] (imputed)	N
863	chr22	36557520	36557521	rs16996442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q12.3	NR	rs16996442-A	NR	7E-16		0.0424	[0.032-0.053] unit increase	Affymetrix [9000000] (imputed)	N
863	chr22	36559298	36559299	rs13053490	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q12.3	APOL3	rs13053490-A	0.941254	1E-25		0.00499473	[0.004-0.006] unit decrease	Affymetrix [13995440] (imputed)	N
864	chr22	36580322	36580323	rs75930695	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.3	NR	rs75930695-A	0.0122	2E-9	(CPT2)	0.3163	NR unit increase	Illumina [1671387] (imputed)	N
864	chr22	36616444	36616445	rs4821469	20532800	Bostrom MA	2010-06-08	Hum Genet	Candidate genes for non-diabetic ESRD in African Americans: a genome-wide association study using pooled DNA.	End-stage renal disease (non-diabetic)	464 African American cases, 478 African American controls	336 African American cases, 363 African American controls	22q12.3	MYH9	rs4821469-?	0.056	2E-19		2.86	[2.27-3.57]	Illumina [~ 550000]	N
864	chr22	36631690	36631691	rs2157250	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	22q12.3	APOL2	rs2157250-?	NR	4E-7	(EA)			Illumina [up to 666531]	N
864	chr22	36633835	36633836	rs916264	31466081	Luo A	2019-08-29	Neuropsychopharmacology	Epigenetic aging is accelerated in alcohol use disorder and regulated by genetic variation in APOL2.	Epigenetic age acceleration in alcohol use disorder	154 European ancestry individuals, 156 African American individuals	NA	22q12.3	APOL2	rs916264-A	NR	5E-8		3.09	NR unit increase	Illumina [up to 666531]	N
864	chr22	36638704	36638705	rs71314970	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	APOL1	rs71314970-T	0.106	4E-19	(Apolipoprotein L1, APOL1.11510.31.3)	0.37	[0.29-0.45] unit decrease	Affymetrix [10572788] (imputed)	N
864	chr22	36651364	36651365	rs5756118	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,366 Icelandic ancestry individuals	NA	22q12.3		rs5756118-G	0.4325	2E-23		0.17916	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
864	chr22	36653853	36653854	rs10854688	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,361 Icelandic ancestry individuals	NA	22q12.3		rs10854688-C	0.2458	4E-55		0.321566	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
864	chr22	36657431	36657432	rs136161	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	22q12.3	APOL1	rs136161-G	NR	2E-6	(recessive )	1.27	[1.10-1.46]	Affymetrix [NR]	N
864	chr22	36657431	36657432	rs136161	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	22q12.3	APOL1	rs136161-G	0.74	5E-7	(AA, recessive )	1.36	[1.21-1.54]	Affymetrix [NR]	N
864	chr22	36658854	36658855	rs4419330	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOL1	5,361 Icelandic ancestry individuals	NA	22q12.3		rs4419330-C	0.064	9E-116		0.806417	[0.74-0.88] unit increase	Illumina [7506463] (imputed)	N
864	chr22	36661151	36661152	rs28480494	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	APOL1	rs28480494-A	0.813	2E-23	(CDGSH iron-sulfur domain-containing protein 1, CISD1.7745.3.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
864	chr22	36661329	36661330	rs2239785	20668430	Genovese G	2010-07-28	Kidney Int	A risk allele for focal segmental glomerulosclerosis in African Americans is located within a region containing APOL1 and MYH9.	Glomerulosclerosis	56 African American cases, 61 European ancestry cases, 1,759 African American controls, 1,531 European ancestry controls	299 European ancestry cases	22q12.3	APOL1, MYH9	rs2239785-G	0.64	5E-13	(AA)			Illumina [up to 542539]	N
864	chr22	36661905	36661906	rs73885319	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	22q12.3	APOL1	rs73885319-G	0.077	2E-9		1.51	[1.32-1.72]	Illumina [1438399] (imputed)	N
864	chr22	36672294	36672295	rs767855	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.3	MYH9	rs767855-T	0.338346	4E-17		0.0165373	[0.013-0.02] unit increase	NR [13737936] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306709	2E-10		0.015642898	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306693	3E-10		0.015551189	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306676	2E-19		0.022096748	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306666	5E-10		0.015388525	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306671	7E-13		0.0170547	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306645	3E-9		0.01435284	[0.0096-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306725	8E-11		0.015976725	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.3	MYH9	rs7078-G	0.306717	7E-11		0.016011259	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
864	chr22	36677913	36677914	rs7078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.3		rs7078-?	NR	7E-25				NR [~ 8900000] (imputed)	N
864	chr22	36677913	36677914	rs7078	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.3		rs7078-?	NR	2E-24		0.0232588	[0.019-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
864	chr22	36678778	36678779	rs140588099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs140588099-C	0.996503	2E-11				Affymetrix, Illumina [17210439] (imputed)	N
864	chr22	36678778	36678779	rs140588099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q12.3	NR	rs140588099-C	0.996458	8E-13		0.117151	[0.085-0.149] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
864	chr22	36679057	36679058	rs735854	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (rim area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	22q12.3	MYH9	rs735854-C	NR	9E-6		0.156	[0.072-0.240] unit decrease	Illumina [~ 2740000] (imputed)	N
864	chr22	36680713	36680714	rs2071732	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	APOL1	rs2071732-C	0.93765625	1E-19	(APOL1, 11510_51_3)	0.4370592	[0.34-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
864	chr22	36682706	36682707	rs13053731	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	22q12.3	MYH9	rs13053731-?	NR	5E-7		0.301	[0.18-0.42] unit decrease	Illumina [5574300] (imputed)	N
864	chr22	36682798	36682799	rs138158369	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	22q12.3		rs138158369-?	NR	8E-12		0.263835	[0.19-0.34] unit decrease	NR [9800000] (imputed)	N
864	chr22	36682798	36682799	rs138158369	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs138158369-C	NR	4E-13		0.3559	[0.26-0.45] unit decrease	Affymetrix [9000000] (imputed)	N
864	chr22	36683554	36683555	rs9610482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs9610482-T	0.280552	4E-12				Affymetrix, Illumina [24588908] (imputed)	N
864	chr22	36683554	36683555	rs9610482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q12.3		rs9610482-?	NR	2E-8				NR [~ 8900000] (imputed)	N
864	chr22	36684330	36684331	rs5756130	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	22q12.3	NR	rs5756130-A	0.11	6E-6		1.21		Illumina [803202]	N
864	chr22	36684357	36684358	rs2269530	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.3	MYH9	rs2269530-A	0.19274	6E-9		0.016640844	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
864	chr22	36686525	36686526	rs62232665	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	APOL1	rs62232665-G	0.925	6E-6	(APOL1, 11510_31_3)	0.20211987	[0.11-0.29] unit increase	Illumina [> 1000000] (imputed)	N
865	chr22	36708482	36708483	rs5750250	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	22q12.3	MYH9	rs5750250-G	NR	8E-8	(additive )	1.27	[1.16-1.38]	Affymetrix [NR]	N
865	chr22	36708482	36708483	rs5750250	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	22q12.3	MYH9	rs5750250-G	0.52	8E-8	(AA, additive )	1.27	[1.16-1.38]	Affymetrix [NR]	N
865	chr22	36733001	36733002	rs776420285	30108283	Granot-Hershkovitz E	2018-08-14	Eur J Hum Genet	A study of Kibbutzim in Israel reveals risk factors for cardiometabolic traits and subtle population structure.	Hip circumference	733 Ashkenazi Jewish ancestry individuals (founder/population isolate), 168 Sephardi Jewish, North African Jewish, Middle Eastern, Caucasian and Yemenite Jewish individuals	1,620 individuals	22q12.3	MYH9	rs776420285-G	NR	6E-7		7.604	[4.62-10.59] cm increase	Illumina [212505] (imputed)	N
865	chr22	36758546	36758547	rs136211	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	22q12.3		rs136211-A	0.313	4E-24		0.12	[0.1-0.14] % increase	Affymetrix [NR] (imputed)	N
865	chr22	36758546	36758547	rs136211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	MYH9	rs136211-G	0.685835	1E-25		0.025366087	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr22	36758546	36758547	rs136211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q12.3	MYH9	rs136211-G	0.685826	4E-30		0.027837547	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr22	36758546	36758547	rs136211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	MYH9	rs136211-G	0.685901	3E-29		0.0273703	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr22	36758546	36758547	rs136211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs136211-?	NR	2E-40				NR [~ 8900000] (imputed)	N
865	chr22	36758546	36758547	rs136211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	MYH9	rs136211-G	0.6856	6E-14		0.02906488	[0.021-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
865	chr22	36758546	36758547	rs136211	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	MYH9	rs136211-G	0.6857	3E-14		0.02953162	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
865	chr22	36759814	36759815	rs136213	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q12.3	MYH9	rs136213-A		1E-12		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
865	chr22	36762633	36762634	rs5995288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.3	MYH9	rs5995288-C	0.683	2E-14		0.018280448	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr22	36766480	36766481	rs2413399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.3	MYH9	rs2413399-G	0.682746	5E-12		0.016446985	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
865	chr22	36766480	36766481	rs2413399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs2413399-G	0.578105	2E-12				Affymetrix, Illumina [24653286] (imputed)	N
865	chr22	36766480	36766481	rs2413399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q12.3	NR	rs2413399-G	0.682578	4E-15		0.01563	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
865	chr22	36766480	36766481	rs2413399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs2413399-G	0.581634	7E-10				Affymetrix, Illumina [24558453] (imputed)	N
865	chr22	36766480	36766481	rs2413399	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q12.3	NR	rs2413399-G	0.682554	2E-12		0.013948	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
865	chr22	36771255	36771256	rs2294358	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q12.3	MYH9	rs2294358-G	0.946358	1E-18		0.0363772	[0.028-0.044] unit decrease	NR [13737936] (imputed)	N
865	chr22	36771255	36771256	rs2294358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q12.3		rs2294358-?	NR	2E-9				NR [~ 8900000] (imputed)	N
865	chr22	36774448	36774449	rs5750254	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	MYH9	rs5750254-A	0.316417	8E-30		0.026771322	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
865	chr22	36790240	36790241	rs112766864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q12.3		rs112766864-G	NR	9E-11		0.0262	[0.018-0.034] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
865	chr22	36793191	36793192	rs113283142	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	22q12.3	NR	rs113283142-?	NR	4E-6	(male)	0.2306	[0.13-0.33] unit decrease	Illumina [11133794] (imputed)	N
865	chr22	36797986	36797987	rs140824223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q12.3		rs140824223-?	NR	6E-8				NR [~ 8900000] (imputed)	N
865	chr22	36803932	36803933	rs79256915	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q12.3	NR	rs79256915-A	NR	1E-14		0.0443	[0.033-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
865	chr22	36829001	36829002	rs28430325	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q12.3		rs28430325-?	NR	2E-15		0.0359644	[0.027-0.045] unit decrease	Affymetrix [20259828] (imputed)	N
866	chr22	36959218	36959219	rs6000329	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q12.3		rs6000329-?	NR	5E-9				NR [~ 8900000] (imputed)	N
867	chr22	36983427	36983428	rs2235682	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	22q12.3	CACNG2	rs2235682-A	0.274	2E-6	(Dichotomous PC20)	1.28	[NR]	Illumina [546355]	N
867	chr22	36995619	36995620	rs6519021	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q12.3	NR	rs6519021-?	NR	6E-6		4.02	[2.88-5.6]	Illumina [539000] (imputed)	N
868	chr22	37096572	37096573	rs2284015	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	22q12.3	CACNG2	rs2284015-G		9E-8		0.0053	[0.0033-0.0073] unit increase	Affymetrix [13304133] (imputed)	N
868	chr22	37199805	37199806	rs2022068	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		22q12.3	NR	rs2022068-A	0.3926	7E-6		1.1831	[NR] unit increase	Illumina [1200000] (imputed)	N
868	chr22	37208148	37208149	rs739031	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q12.3	PVALB	rs739031-C	0.205	2E-6	(Bone mineral content )	0.03	[NR] kg increase	Illumina [899892]	N
868	chr22	37209295	37209296	rs4820255	22509378	Burri A	2012-04-11	PLoS One	A genome-wide association study of female sexual dysfunction.	Sexual dysfunction (female)	1,104 European ancestry twins	NA	22q12.3	PVALB	rs4820255-C	NR	2E-6	(Overall FSD)	0.366	[0.22-0.51] unit decrease	Illumina [2287762] (imputed)	N
868	chr22	37212535	37212536	rs762920	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	22q12.3	PVALB	rs762920-A	0.21	5E-8	(right arm)	0.32	[0.2-0.44] g decrease	Illumina [> 1100000]	N
868	chr22	37212535	37212536	rs762920	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	22q12.3	PVALB	rs762920-A	0.21	3E-7	(right leg)	0.3	[0.18-0.42] g decrease	Illumina [> 1100000]	N
868	chr22	37212535	37212536	rs762920	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	22q12.3	PVALB	rs762920-A	0.21	2E-7	(left arm)	0.31	[0.19-0.43] g decrease	Illumina [> 1100000]	N
868	chr22	37223433	37223434	rs61148964	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	22q12.3	NR	rs61148964-?	NR	7E-6		0.1671	[0.093-0.241] unit decrease	Illumina [at least 560000] (imputed)	N
869	chr22	37258502	37258503	rs4821544	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	22q12.3	NCF4, PVALB	rs4821544-T	0.6854	4E-7	(conditional)	0.0290989	NR unit decrease	NR [NR]	N
869	chr22	37258502	37258503	rs4821544	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	22q12.3	NCF4	rs4821544-C	0.321	2E-8		1.1	[1.07-1.13]	Illumina [9560910] (imputed)	N
869	chr22	37258502	37258503	rs4821544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	22q12.3	NCF4, CTA-833B7.2	rs4821544-C	0.3079	5E-14		0.02920016	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
869	chr22	37258502	37258503	rs4821544	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	22q12.3	NCF4, CTA-833B7.2	rs4821544-C	0.3079	5E-13		0.02798947	[0.02-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
869	chr22	37258502	37258503	rs4821544	22197932	Paternoster L	2011-12-25	Nat Genet	Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis.	Atopic dermatitis	5,606 European ancestry cases, 20,565 European ancestry controls	5,419 European ancestry cases, 19,833 European ancestry controls	22q12.3	NCF4	rs4821544-C	0.29	6E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 2500000] (imputed)	N
869	chr22	37258985	37258986	rs760517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	CTA-833B7.2, NCF4	rs760517-T	0.372218	1E-15		0.02030566	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
869	chr22	37258985	37258986	rs760517	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3	CTA-833B7.2, NCF4	rs760517-T	0.372197	4E-16		0.020599077	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
869	chr22	37258985	37258986	rs760517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs760517-T	0.342327	3E-31				Affymetrix, Illumina [19872809] (imputed)	N
869	chr22	37258985	37258986	rs760517	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q12.3	NR	rs760517-T	0.37406	3E-31		0.025957	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
869	chr22	37258985	37258986	rs760517	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	22q12.3	NCF4	rs760517-T	0.375008	1E-8		1.0390522	1.02544421051123-1.05284088112112]	NR [9572556] (imputed)	N
869	chr22	37258985	37258986	rs760517	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q12.3	NCF4	rs760517-C	NR	5E-11		1.07	NR	Affymetrix, Illumina [8278136] (imputed)	N
869	chr22	37258985	37258986	rs760517	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q12.3		rs760517-?	NR	6E-29				NR [~ 8900000] (imputed)	N
869	chr22	37258985	37258986	rs760517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	22q12.3	NCF4, CTA-833B7.2	rs760517-T	0.3755	6E-10		0.02437352	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
869	chr22	37258985	37258986	rs760517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	22q12.3	NCF4, CTA-833B7.2	rs760517-T	0.3755	4E-12		0.02719633	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
869	chr22	37258985	37258986	rs760517	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	22q12.3	NCF4, CTA-833B7.2	rs760517-T	0.3754	9E-11		0.02552925	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
869	chr22	37260242	37260243	rs201113322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs201113322-G	0.0169628	4E-10				Affymetrix, Illumina [19905671] (imputed)	N
869	chr22	37268554	37268555	rs2072711	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	22q12.3	NCF4	rs2072711-?	NR	4E-6			[1.0615-1.1455]	NR [2487152]	N
869	chr22	37281072	37281073	rs149136588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3		rs149136588-C	0.00674900000000001	1E-13		0.11560357	[0.085-0.146] unit increase	Affymetrix [93095623] (imputed)	N
869	chr22	37281072	37281073	rs149136588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3		rs149136588-C	0.00675300000000001	4E-12		0.10825747	[0.078-0.139] unit increase	Affymetrix [93095623] (imputed)	N
869	chr22	37297351	37297352	rs117582568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	22q12.3		rs117582568-C	0.015273	1E-41		0.288666	[0.25-0.33] unit decrease	Illumina [13470073] (imputed)	N
869	chr22	37297351	37297352	rs117582568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q12.3		rs117582568-C	NR	1E-41		0.2887	[0.25-0.33] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
869	chr22	37297351	37297352	rs117582568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	22q12.3		rs117582568-C	0.015204	3E-31		0.252763	[0.21-0.3] unit decrease	Illumina [13469940] (imputed)	N
869	chr22	37297351	37297352	rs117582568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	22q12.3		rs117582568-C	NR	3E-31		0.2528	[0.21-0.3] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
869	chr22	37297351	37297352	rs117582568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	22q12.3	NR	rs117582568-G	0.990971	1E-45		0.495814	[0.43-0.56] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
869	chr22	37297351	37297352	rs117582568	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	22q12.3	NR	rs117582568-G	0.990977	2E-38		0.473824	[0.4-0.55] SD units increase	Affymetrix, Illumina [16286709] (imputed)	N
869	chr22	37298343	37298344	rs5756391	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	22q12.3	NCF4	rs5756391-A	0.352	9E-6	(conditional)	0.0231752	NR unit decrease	NR [NR]	N
869	chr22	37298343	37298344	rs5756391	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	22q12.3	NCF4, CSF2RB	rs5756391-G	0.621	3E-7		0.0182505	[0.011-0.025] unit decrease	Illumina [13519193] (imputed)	N
869	chr22	37298343	37298344	rs5756391	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q12.3	NCF4, CSF2RB	rs5756391-G	0.621	6E-9		0.0188614	[0.012-0.025] unit decrease	Illumina [13520550] (imputed)	N
869	chr22	37298343	37298344	rs5756391	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	22q12.3	NCF4, CSF2RB	rs5756391-A	0.39	1E-6		1.06	[1.03-1.08]	Illumina [161311]	N
869	chr22	37307593	37307594	rs55909515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	CSF2RB	rs55909515-T	0.033319	4E-15		0.048738398	[0.037-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
869	chr22	37307593	37307594	rs55909515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3	CSF2RB	rs55909515-T	0.033331	2E-14		0.047513686	[0.035-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
869	chr22	37308784	37308785	rs4821558	27569725	Yang SK	2016-08-25	Gastroenterology	Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans.	Inflammatory bowel disease	1,505 Korean ancestry cases, 4,041 Korean ancestry controls	1,989 Korean ancestry cases, 3,491 Korean ancestry controls	22q12.3	NCF4, CSF2RB	rs4821558-C	0.34	8E-7		1.16	[NR]	Illumina [522285]	N
869	chr22	37310045	37310046	rs2075726	22138694	Lin Z	2011-12-04	Nat Genet	A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.	Ankylosing spondylitis	1,837 Han Chinese ancestry cases, 4,231 Han Chinese ancestry controls	2,100 Han Chinese ancestry cases, 3,496 Han Chinese ancestry controls	22q12.3	NR	rs2075726-G	0.45	9E-6		1.14	[1.07-1.20]	Illumina [1356350] (imputed)	N
869	chr22	37310953	37310954	rs5756405	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q12.3	CSF2RB	rs5756405-A	NR	5E-11		1.0645	NR	Affymetrix, Illumina [8278136] (imputed)	N
869	chr22	37311857	37311858	rs60175411	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	CSF2RB	rs60175411-A	0.166647	9E-20		0.02781679	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
869	chr22	37312560	37312561	rs2413436	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and LDL levels (pleiotropy)	215,725 individuals	NA	22q12.3	CSF2RB	rs2413436-?	NR	9E-6			[1.0437-1.1088]	NR [2491989]	N
869	chr22	37314289	37314290	rs4821564	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	22q12.3		rs4821564-C	0.7019	3E-9		1.08		Affymetrix, Illumina [9397031] (imputed)	N
869	chr22	37316132	37316133	rs41280005	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3	CSF2RB	rs41280005-A	0.166684	6E-20		0.027920889	[0.022-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
869	chr22	37317367	37317368	rs56910421	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	22q12.3		rs56910421-T	0.833	8E-10				Affymetrix [10369434] (imputed)	N
869	chr22	37319008	37319009	rs2075943	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	22q12.3	NR	rs2075943-a	0.576	2E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [16201029] (imputed)	N
869	chr22	37319424	37319425	rs2072713	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	22q12.3	NR	rs2072713-T	0.5155	3E-8		1.0341262	[1.02-1.05]	Affymetrix [15688218] (imputed)	N
869	chr22	37319588	37319589	rs5750339	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	22q12.3	CSF2RB	rs5750339-G	NR	2E-6		0.114919	[0.068-0.162] unit increase	Illumina [7433384] (imputed)	N
869	chr22	37319588	37319589	rs5750339	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	22q12.3	CSF2RB	rs5750339-G	0.457	4E-22		0.0515405	[0.041-0.062] unit decrease	Illumina [13520550] (imputed)	N
869	chr22	37319588	37319589	rs5750339	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q12.3	CSF2RB	rs5750339-G	0.457	5E-7	(women)	0.0232826	[0.014-0.032] unit increase	Illumina [13520550] (imputed)	N
869	chr22	37319588	37319589	rs5750339	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	22q12.3	CSF2RB	rs5750339-G	0.457	2E-22		0.0364758	[0.029-0.044] unit increase	Illumina [13520550] (imputed)	N
869	chr22	37329447	37329448	rs1534881	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CSF2RB	5,358 Icelandic ancestry individuals	NA	22q12.3		rs1534881-A	0.4463	2E-204		0.509726	[0.48-0.54] unit decrease	Illumina [7506463] (imputed)	N
869	chr22	37329447	37329448	rs1534881	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	CSF2RB	rs1534881-A	0.446	3E-38	(Cytokine receptor common subunit beta, CSF2RB.10512.13.3)	0.32	[0.28-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
869	chr22	37330778	37330779	rs5756414	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q12.3	CSF2RB	rs5756414-C	0.43421875	1E-100	(CSF2RB, 10512_13_3)	0.50663275	[0.46-0.55] unit decrease	Illumina [> 1000000] (imputed)	N
869	chr22	37333108	37333109	rs112137675	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CSF2RB	rs112137675-?	NR	3E-12	(male)	3.52338	[NR] unit decrease	Affymetrix [NR] (imputed)	N
869	chr22	37333972	37333973	rs568607741	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	22q12.3		rs568607741-?	NR	1E-33		0.498012	[0.41-0.58] unit decrease	NR [9800000] (imputed)	N
870	chr22	37374750	37374751	rs10470277	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.3	NR	rs10470277-T	0.2474	2E-8	(MPST)	0.1361	NR unit decrease	Illumina [1671387] (imputed)	N
870	chr22	37386919	37386920	rs713829	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.3	NR	rs713829-C	0.2683	8E-9	(MPST)	0.1294	NR unit decrease	Illumina [1671387] (imputed)	N
870	chr22	37397895	37397896	rs35395810	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	22q12.3		rs35395810-?	NR	2E-7		57.0785	[55.54-58.61]	NR [663102]	N
870	chr22	37401531	37401532	rs2413447	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs2413447-A	NR	5E-14		0.0185	[0.014-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr22	37405661	37405662	rs117496069	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	22q12.3	Intergenic	rs117496069-T	NR	5E-7	(between families)	5.043	unit increase	Affymetrix [up to 15107142] (imputed)	N
870	chr22	37409225	37409226	rs5756482	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs5756482-?	NR	1E-300				NR [~ 8900000] (imputed)	N
870	chr22	37412132	37412133	rs5756485	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs5756485-C	0.48946	8E-601				Affymetrix, Illumina [20825802] (imputed)	N
870	chr22	37416799	37416800	rs5756487	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.3		rs5756487-?	NR	1E-300				NR [~ 8900000] (imputed)	N
870	chr22	37417196	37417197	rs5756489	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q12.3	NR	rs5756489-C	0.517903	6E-792		0.116771	[0.11-0.12] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
870	chr22	37420122	37420123	rs11704682	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q12.3	NR	rs11704682-G	0.1376	5E-14	(MPST)	0.2155	NR unit decrease	Illumina [1671387] (imputed)	N
870	chr22	37421468	37421469	rs6000536	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Oxalobacter id.2978)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	22q12.3		rs6000536-C	NR	2E-7		5.1937914	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
870	chr22	37421468	37421469	rs6000536	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Oxalobacteraceae id.2966)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	22q12.3		rs6000536-C	NR	7E-7		4.950898	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
870	chr22	37421701	37421702	rs5756491	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q12.3	NR	rs5756491-A	0.474394	1E-444		0.086737	[0.083-0.091] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
870	chr22	37424990	37424991	rs5756492	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	22q12.3	MPST	rs5756492-?	NR	5E-8				Illumina [8896142] (imputed)	N
870	chr22	37434027	37434028	rs25095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs25095-G	0.438229	7E-393				Affymetrix, Illumina [22063850] (imputed)	N
870	chr22	37435410	37435411	rs79841658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.3		rs79841658-?	NR	6E-66				NR [~ 8900000] (imputed)	N
870	chr22	37439032	37439033	rs130627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs130627-G	NR	2E-12		0.0258	[0.019-0.033] unit increase	Affymetrix [9000000] (imputed)	N
870	chr22	37445667	37445668	rs9610638	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	22q12.3	KCTD17	rs9610638-T	0.43	7E-17		0.14	[0.10-0.18] g/dL decrease	Illumina [27801688] (imputed)	N
870	chr22	37453255	37453256	rs2235320	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	22q12.3	KCTD17	rs2235320-T	0.123	4E-6		0.11	[0.07-0.16] unit decrease	Affymetrix [7435577] (imputed)	N
870	chr22	37453255	37453256	rs2235320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	KCTD17	rs2235320-T	0.13532	1E-14		0.026616229	[0.02-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37453255	37453256	rs2235320	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	KCTD17	rs2235320-T	0.135304	3E-43		0.112618	[0.11-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37460448	37460449	rs760719	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q12.3	KCTD17, TMPRSS6	rs760719-T	0.433784	1E-22		0.022268752	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37460448	37460449	rs760719	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	22q12.3	KCTD17, TMPRSS6	rs760719-C	NR	2E-8		0.026	[0.016-0.036] unit increase	Illumina [27700000] (imputed)	N
870	chr22	37460448	37460449	rs760719	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	22q12.3	TMPRSS6	rs760719-T	0.443	5E-6		0.09	[0.051-0.129] unit increase	Illumina [up to 38043574] (imputed)	N
870	chr22	37462925	37462926	rs2235321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.3	NR	rs2235321-A	NR	5E-20		0.0224	[0.018-0.027] unit increase	Affymetrix [9000000] (imputed)	N
870	chr22	37462925	37462926	rs2235321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs2235321-A	NR	1E-66		0.0431	[0.038-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	22q12.3		rs855791-A	0.4351	1E-8		0.0882	[0.058-0.119] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
870	chr22	37462935	37462936	rs855791	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	22q12.3		rs855791-A	0.4112	4E-18		0.0879	[0.068-0.108] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
870	chr22	37462935	37462936	rs855791	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	10,693 Hispanic or Latin American individuals	NA	22q12.3		rs855791-A	0.4379	9E-11		0.0925	[0.064-0.121] unit increase	Affymetrix, Illumina [23060038] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	5E-41		0.0266	[0.023-0.031] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	1E-14		0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	2E-37		0.0245	[0.021-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	9E-761		0.1177	[0.11-0.12] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q12.3		rs855791-G	0.435186	7E-128		0.0871466	[0.08-0.094] unit increase	Illumina [13476266] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	4E-260		0.0688	[0.065-0.073] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	22q12.3		rs855791-G	0.435255	3E-102		0.0781285	[0.071-0.085] unit increase	Illumina [13477028] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	8E-1100		0.1416	[0.14-0.15] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	22q12.3		rs855791-G	0.435145	2E-222		0.116401	[0.11-0.12] unit increase	Illumina [13476299] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-146		0.0525	[0.049-0.056] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-373		0.0671	[0.064-0.07] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	22q12.3		rs855791-G	0.435126	1E-54		0.0481428	[0.042-0.054] unit increase	Illumina [13478948] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q12.3		rs855791-G	NR	4E-181		0.0478	[0.044-0.051] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
870	chr22	37462935	37462936	rs855791	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	22q12.3		rs855791-G	0.434786	2E-22		0.0307538	[0.025-0.037] unit increase	Illumina [13478961] (imputed)	N
870	chr22	37462935	37462936	rs855791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q12.3		rs855791-A	0.439	7E-18				Affymetrix [10369434] (imputed)	N
870	chr22	37462935	37462936	rs855791	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver iron content	32,858 European ancestry individuals	NA	22q12.3	KCTD17	rs855791-?	NR	8E-31		0.0901	NR mg/g increase	Affymetrix [9390170] (imputed)	N
870	chr22	37462935	37462936	rs855791	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	22q12.3		rs855791-A	0.44	3E-610		0.59	[-0.61--0.56] % decrease	Affymetrix [NR] (imputed)	N
870	chr22	37462935	37462936	rs855791	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.5388	1E-8		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
870	chr22	37462935	37462936	rs855791	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	15,248 Hispanic individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.4297	5E-10		0.0282	[0.02-0.037] unit increase	Affymetrix, Illumina [29199641] (imputed)	N
870	chr22	37462935	37462936	rs855791	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.4339	1E-56		0.0188	[0.016-0.021] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Red cell distribution width	10,184 White ancestry individuals, 44 Asian ancestry individuals, 6,776 Black individuals, 11,978 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-29		0.14	[0.12-0.16] unit decrease	Illumina [76131582]	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-65		0.65	[0.57-0.73] unit increase	Illumina [97506867]	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin concentration	25,256 Amish, White ancestry individuals, 447 Asian ancestry individuals, 13,112 Black individuals, 13,833 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-26		0.07	[0.05-0.09] unit increase	Illumina [101200590]	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-89		0.31	[0.27-0.35] unit increase	Illumina [94681438]	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hemoglobin	33,325 Amish, White ancestry individuals, 653 Asian ancestry individuals, 14,454 Black individuals, 14,029 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	3E-51		0.11	[0.09-0.13] unit increase	Illumina [110351653]	N
870	chr22	37462935	37462936	rs855791	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Hematocrit	33,324 Amish, White ancestry individuals, 654 Asian ancestry individuals, 14,474 Black individuals, 14,035 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q12.3		rs855791-G	NR	1E-26		0.23	[0.19-0.27] unit increase	Illumina [110396782]	N
870	chr22	37462935	37462936	rs855791	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.431	1E-300		0.17	[0.18-0.16] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.431	3E-8		0.026	[0.017-0.035] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.431	1E-300		0.17	[0.18-0.16] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.431	6E-37		0.044	[0.051-0.038] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561517	2E-83		0.043871302	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.56151	2E-67		0.039327245	[0.035-0.044] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561487	5E-420		0.11402687	[0.11-0.12] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561292	6E-33		0.027280316	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561307	4E-33		0.027315957	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561584	2E-149		0.063112006	[0.058-0.068] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561409	1E-407		0.148192	[0.14-0.15] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.561408	7E-278		0.0947693	[0.09-0.099] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561432	8E-718		0.15265593	[0.15-0.16] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561557	5E-13		0.016410572	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561407	8E-327		0.09190754	[0.087-0.097] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.561418	5E-202		0.06888587	[0.064-0.073] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,166 South Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.52335	2E-11		0.106185	[0.075-0.137] SD units increase	Affymetrix, Illumina [28471494] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs855791-G	0.540336	8E-27				Affymetrix, Illumina [24332387] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs855791-G	0.541469	6E-53				Affymetrix, Illumina [24588908] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q12.3	NR	rs855791-G	0.563602	5E-49		0.027969	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	9,298 Hispanic or Latin American individuals	NA	22q12.3	NR	rs855791-A	0.426419	2E-17		0.129742	[0.1-0.16] SD units decrease	Affymetrix, Illumina [26810224] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.565723	2E-115		0.093585	[0.086-0.102] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.565725	7E-93		0.082062	[0.074-0.09] SD units decrease	Affymetrix, Illumina [16289083] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.565722	6E-200		0.124369	[0.12-0.13] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q12.3	NR	rs855791-G	0.563509	1E-605		0.100367	[0.097-0.104] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	149,861 East Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.565362	4E-65		0.062835	[0.056-0.07] SD units decrease	Affymetrix, Illumina [16709126] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs855791-G	0.542333	1E-311				Affymetrix, Illumina [24558453] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q12.3	NR	rs855791-G	0.563607	4E-284		0.06868	[0.065-0.072] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
870	chr22	37462935	37462936	rs855791	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	22q12.3	NR	rs855791-A	0.565734	4E-29		0.042246	[0.035-0.05] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	9,611 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	2E-9		0.1285	[0.087-0.17] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	22q12.3		rs855791-?	0.61	2E-38		0.104	[0.088-0.12] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	7E-20		0.0981	[0.077-0.119] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	22q12.3		rs855791-?	0.61	3E-51		0.5954	[0.52-0.67] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	17,141 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	4E-24		0.6533	[0.53-0.78] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	3E-28		0.5782	[0.48-0.68] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	29,587 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	2E-13		0.0578	[0.042-0.073] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	20,877 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	8E-19		0.0969	[0.076-0.118] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	22q12.3		rs855791-?	0.61	5E-30		0.0688	[0.057-0.081] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	22q12.3		rs855791-?	0.61	8E-81		0.2884	[0.26-0.32] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	9E-45		0.334	[0.29-0.38] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	2E-40		0.2731	[0.23-0.31] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	29,379 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	8E-34		0.0993	[0.083-0.115] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	20,692 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	2E-25		0.12	[0.097-0.143] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals, 20,692 Hispanic or Latin American individuals, 29,379 European ancestry individuals, 630 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	22q12.3		rs855791-?	0.61	2E-58		0.1019	[0.09-0.114] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hemoglobin concentration	16,186 African American individuals	NA	22q12.3		rs855791-?	0.8309	6E-6		0.0755	[0.043-0.108] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	29,383 European ancestry individuals	NA	22q12.3		rs855791-?	0.5667	5E-21		0.2288	[0.18-0.28] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	20,704 Hispanic or Latin American individuals	NA	22q12.3		rs855791-?	0.5622	4E-13		0.2407	[0.18-0.31] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Hematocrit	16,184 African American individuals, 20,704 Hispanic or Latin American individuals, 29,383 European ancestry individuals, 631 Asian ancestry individuals, 601 Native American ancestry individuals, 381 individuals	NA	22q12.3		rs855791-?	0.61	4E-34		0.2256	[0.19-0.26] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
870	chr22	37462935	37462936	rs855791	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hemoglobin levels	14,739 African American individuals, 6,762 African ancestry individuals, 21,686 Hispanic/Latino individuals	7,037 African American individuals	22q12.3	NR	rs855791-G	NR	3E-28	(Hispanic/Latino)	0.109	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
870	chr22	37462935	37462936	rs855791	31869403	Kowalski MH	2019-12-23	PLoS Genet	Use of >100,000 NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium whole genome sequences improves imputation quality and detection of rare variant associations in admixed African and Hispanic/Latino populations.	Hematocrit	14,735 African American individuals, 6,762 African ancestry individuals, 21,684 Hispanic/Latino individuals	7,050 African American individuals	22q12.3	NR	rs855791-G	NR	2E-10	(Hispanic/Latino)	0.064	NR unit increase	Affymetrix, Illumina [up to 35800000] (imputed)	N
870	chr22	37462935	37462936	rs855791	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	22q12.3	NR	rs855791-?	NR	9E-18		0.1113435	[0.086-0.137] unit increase	Illumina [27815891] (imputed)	N
870	chr22	37462935	37462936	rs855791	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hemoglobin A1c levels	559 African American individuals, 10,408 Hispanic/Latino individuals, 92 Asian ancestry individuals, 4 Native American ancestry individuals, 115 individuals	NA	22q12.3	NR	rs855791-?	NR	3E-10		0.08634675	[0.06-0.113] unit decrease	Illumina [22871999] (imputed)	N
870	chr22	37462935	37462936	rs855791	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-A	0.438	9E-10		0.03	[0.01-0.05] % increase	Illumina [11510031] (imputed)	N
870	chr22	37462935	37462936	rs855791	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean corpuscular volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.442	5E-12		0.621	[0.44-0.8] fL decrease	Illumina [498916]	N
870	chr22	37462935	37462936	rs855791	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q12.3	TMPRSS6	rs855791-A	0.4067	1E-10		0.0123	[0.0086-0.016] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
870	chr22	37462935	37462936	rs855791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.555	2E-16	(Transferrin receptor protein 1, TFRC.8795.48.3)	0.2	[0.16-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	5E-8		0.02357	[0.015-0.032] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	2E-95		0.08912	[0.081-0.098] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	5E-77		0.08004	[0.072-0.088] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	1E-158		0.1153	[0.11-0.12] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	1E-34		0.05255	[0.044-0.061] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	1E-14		0.03306	[0.025-0.041] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37462935	37462936	rs855791	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-T	0.439	1E-204		0.118806	[0.11-0.13] unit increase	Affymetrix [16832071] (imputed)	N
870	chr22	37462935	37462936	rs855791	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-G	0.44	2E-17		0.64	[0.50-0.78] fL decrease	Illumina [27801688] (imputed)	N
870	chr22	37462935	37462936	rs855791	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin concentration	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-T	0.439	2E-16		0.142	[0.11-0.18] g/dL decrease	Illumina [27801688] (imputed)	N
870	chr22	37462935	37462936	rs855791	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-A	0.44	1E-34		0.34	[0.28-0.40] pg decrease	Illumina [27801688] (imputed)	N
870	chr22	37462935	37462936	rs855791	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hemoglobin	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-A	0.44	6E-23		0.15	[0.11-0.19] g/dL decrease	Illumina [27801688] (imputed)	N
870	chr22	37462935	37462936	rs855791	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Hematocrit	12,502 Hispanic/Latino individuals	7,106 Hispanic/Latino individuals	22q12.3	TMPRSS6	rs855791-A	0.44	1E-10		0.38	[0.30-0.46] % decrease	Illumina [27801688] (imputed)	N
870	chr22	37462935	37462936	rs855791	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	22q12.3	TMPRSS6	rs855791-A	NR	3E-48		0.202	[0.17-0.23] unit decrease	Illumina [27700000] (imputed)	N
870	chr22	37462935	37462936	rs855791	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	22q12.3	TMPRSS6	rs855791-A	NR	5E-46		0.322	[0.28-0.37] unit decrease	Illumina [27700000] (imputed)	N
870	chr22	37462935	37462936	rs855791	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (ferritin levels)	12,375 Hispanic/Latino individuals	NA	22q12.3	TMPRSS6	rs855791-A	NR	6E-7		0.023	[0.013-0.033] unit decrease	Illumina [27700000] (imputed)	N
870	chr22	37462935	37462936	rs855791	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	22q12.3	TMPRSS6	rs855791-?		2E-51	(hemoglobin concentration)	0.25	[NR] unit decrease	Illumina [629274]	N
870	chr22	37462935	37462936	rs855791	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.4475	1E-9	(Subset)	0.1265	[0.086-0.167] unit increase	Illumina [up to 38043574] (imputed)	N
870	chr22	37462935	37462936	rs855791	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.4477	9E-15	(Subset)	0.1606	[0.11-0.21] unit increase	Illumina [up to 38043574] (imputed)	N
870	chr22	37462935	37462936	rs855791	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.4473	4E-15		0.1485	[0.11-0.19] unit increase	Illumina [up to 38043574] (imputed)	N
870	chr22	37462935	37462936	rs855791	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	22q12.3	TMPRSS6	rs855791-A	0.446	6E-137		0.19	[0.17-0.21] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
870	chr22	37462935	37462936	rs855791	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	22q12.3	TMPRSS6	rs855791-A	0.446	2E-9		0.044	[0.030-0.058] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
870	chr22	37462935	37462936	rs855791	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (iron levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	22q12.3	TMPRSS6	rs855791-A	0.446	1E-139		0.181	[0.17-0.19] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
870	chr22	37462935	37462936	rs855791	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (ferritin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	22q12.3	TMPRSS6	rs855791-A	0.446	1E-14		0.055	[0.041-0.069] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	7E-12		0.4566	[0.33-0.59] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular volume	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	2E-9	(EA)	0.479	[0.32-0.64] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin concentration	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	4E-7		0.0875	[0.054-0.121] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	NR	2E-6	(AA)			Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	7E-19		0.2326	[0.18-0.28] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Mean corpuscular hemoglobin	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	5E-14	(EA)	0.2343	[0.17-0.3] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Hematology traits	7,943 African American children, 6,234 European ancestry children	NA	22q12.3	TMPRSS6	rs855791-T	0.4408	3E-8	(HGB)	0.0896	[0.058-0.121] unit decrease	Illumina [544917]	N
870	chr22	37462935	37462936	rs855791	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q12.3	KCTD17, TMPRSS6	rs855791-G	0.57	1E-69	(EA, MCH)	0.012	[0.0042-0.0198] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
870	chr22	37462935	37462936	rs855791	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	9E-11	(Iron)	0.236	[0.17-0.31] ng/ml decrease	Illumina [343866]	N
870	chr22	37462935	37462936	rs855791	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	5E-7	(MCH)	0.187	[0.12-0.26] ng/ml decrease	Illumina [343866]	N
870	chr22	37462935	37462936	rs855791	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	22q12.3	TMPRSS6	rs855791-?	NR	4E-9	(Tf Sat)	0.215	[0.15-0.29] ng/ml decrease	Illumina [343866]	N
870	chr22	37462935	37462936	rs855791	21149283	Oexle K	2010-12-10	Hum Mol Genet	Novel association to the proprotein convertase PCSK7 gene locus revealed by analysing soluble transferrin receptor (sTfR) levels.	Iron status biomarkers	Up to 6,616 individuals	NA	22q12.3	TMPRSS6	rs855791-A	NR	2E-15	(sTfR)	0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37462935	37462936	rs855791	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.44	5E-9	(MCV)	0.62	[0.41-0.83] unit decrease	Illumina [489421]	N
870	chr22	37462935	37462936	rs855791	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.44	1E-12	(MCH)	0.29	[0.21-0.37] unit decrease	Illumina [489421]	N
870	chr22	37462935	37462936	rs855791	20858683	Soranzo N	2010-09-21	Diabetes	Common variants at 10 genomic loci influence hemoglobin A?(C) levels via glycemic and nonglycemic pathways.	Glycated hemoglobin levels	up to 46,368 European ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-A	0.42	3E-14		0.03	[0.02-0.04] % increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37462935	37462936	rs855791	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.44	1E-15		0.095	[0.071-0.119] unit increase	Illumina [561583]	N
870	chr22	37462935	37462936	rs855791	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin concentration	14,377 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.44	8E-14		0.089	[0.065-0.113] unit increase	Illumina [561583]	N
870	chr22	37462935	37462936	rs855791	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	22q12.3	TMPRSS6	rs855791-G	0.44	5E-25		0.122	[0.098-0.146] unit increase	Illumina [561583]	N
870	chr22	37462935	37462936	rs855791	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	TMPRSS6	rs855791-A	NR	3E-25		0.09	[0.07-0.11] g/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37462935	37462936	rs855791	19820699	Benyamin B	2009-10-11	Nat Genet	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	22q12.3	TMPRSS6	rs855791-T	0.42	5E-7	(Hgb)	0.1	[0.06-0.14] s.d. decrease	Illumina, Perlegen [427037]	N
870	chr22	37462935	37462936	rs855791	19820699	Benyamin B	2009-10-11	Nat Genet	Common variants in TMPRSS6 are associated with iron status and erythrocyte volume.	Iron status biomarkers	4,818 European ancestry individuals	3,470 European ancestry individuals	22q12.3	TMPRSS6	rs855791-T	0.42	1E-10	(MCV)	0.13	[0.09-0.17] s.d. decrease	Illumina, Perlegen [427037]	N
870	chr22	37462935	37462936	rs855791	19820698	Chambers JC	2009-10-11	Nat Genet	Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels.	Hemoglobin	6,316 European ancestry individuals, 9,685 Indian Asian ancestry individuals	5,187 European ancestry individuals, 6,721 Indian Asian ancestry individuals	22q12.3	TMPRSS6	rs855791-A	0.53	2E-13		0.13	[0.09-0.17] g/dl decrease	Affymetrix, Illumina, Perlegen [NR]	N
870	chr22	37463449	37463450	rs6000550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs6000550-T	0.16801	3E-11		0.0861274	[0.081-0.092] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37463449	37463450	rs6000550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs6000550-T	0.168007	9E-16		0.026362428	[0.02-0.033] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37463449	37463450	rs6000550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.3	TMPRSS6	rs6000550-T	0.1668	6E-60		0.07796815	[0.069-0.087] unit decrease	Affymetrix [~ 2500000] (imputed)	N
870	chr22	37463449	37463450	rs6000550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	TMPRSS6	rs6000550-T	0.1667	7E-71		0.08469347	[0.075-0.094] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr22	37463449	37463450	rs6000550	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	TMPRSS6	rs6000550-T	0.1667	4E-103		0.1028258	[0.093-0.112] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr22	37467269	37467270	rs5756504	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q12.3	TMPRSS6	rs5756504-T		9E-173		0.062	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
870	chr22	37467269	37467270	rs5756504	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	22q12.3	TMPRSS6	rs5756504-T	0.45	2E-10	(Hb)	0.076	[0.052-0.1] unit increase	Illumina [561583]	N
870	chr22	37467353	37467354	rs5756505	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Hematological and biochemical traits	up to 6,843 Korean ancestry individuals	NA	22q12.3	TMPRSS6	rs5756505-C	0.4979	3E-13	(Hemoglobin)	0.1125	NR unit increase	Affymetrix [305158]	N
870	chr22	37467391	37467392	rs5756506	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs5756506-C	0.393109	6E-343				Affymetrix, Illumina [24653286] (imputed)	N
870	chr22	37467391	37467392	rs5756506	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Hematological parameters	4,627 European ancestry individuals	9,316 European ancestry individuals	22q12.3	TMPRSS6	rs5756506-C	NR	1E-9	(MCH)	0.14	[0.10-0.18] pg increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
870	chr22	37469191	37469192	rs6000553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs6000553-G	0.519172	4E-499				Affymetrix, Illumina [21126107] (imputed)	N
870	chr22	37469191	37469192	rs6000553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q12.3	NR	rs6000553-G	0.532828	7E-427		0.092849	[0.089-0.097] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
870	chr22	37469191	37469192	rs6000553	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q12.3	TMPRSS6	rs6000553-A	0.46719	3E-8		0.0111066	[0.0072-0.015] unit decrease	Affymetrix [NR] (imputed)	N
870	chr22	37469191	37469192	rs6000553	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	22q12.3	TMPRSS6	rs6000553-?	NR	2E-8		0.0149	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
870	chr22	37469590	37469591	rs4820268	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	22q12.3	TMPRSS6	rs4820268-G	0.46	2E-9		0.066	[0.042-0.09] unit increase	Affymetrix [~ 12000000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Mean corpuscular hemoglobin concentration	3,750 African American individuals, 15,522 Hispanic/Latino individuals, 128 Asian ancestry individuals, 20 Native American ancestry individuals, 383 individuals	NA	22q12.3	NR	rs4820268-?	NR	2E-14		0.09402841	[0.07-0.118] unit increase	Illumina [27815891] (imputed)	N
870	chr22	37469590	37469591	rs4820268	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	22q12.3	TMPRSS6	rs4820268-G	0.4606	1E-22		0.0162	[0.013-0.02] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	22q12.3	TMPRSS6	rs4820268-A	NR	2E-9	(Asian)	0.0872	[0.059-0.116] grams/deciliter increase	Affymetrix, Illumina [2500000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	21208937	Pichler I	2011-01-04	Hum Mol Genet	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron status biomarkers	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	22q12.3	TMPRSS6	rs4820268-G	0.47	4E-11	(iron)	4.24	[2.99-5.49] ug/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	20927387	Kullo IJ	2010-09-28	PLoS One	A genome-wide association study of red blood cell traits using the electronic medical record.	Red blood cell traits	3,012 European ancestry individuals	NA	22q12.3	TMPRSS6	rs4820268-G	0.47	1E-12	(MCHC)	0.09	[0.07-0.11] unit decrease	Illumina [489421]	N
870	chr22	37469590	37469591	rs4820268	19880490	Tanaka T	2009-10-30	Blood	A genome-wide association analysis of serum iron concentrations.	Iron levels	1,919 European ancestry individuals	569 female indiviuals	22q12.3	TMPRSS6	rs4820268-A	0.54	5E-9		4.39	[2.90-5.88] ug/dL increase	Illumina [475322]	N
870	chr22	37469590	37469591	rs4820268	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Mean corpuscular volume	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	22q12.3	TMPRSS6	rs4820268-A	0.53	4E-12		0.13	[0.09-0.17] s.d. increase	Illumina, Perlegen [~ 2500000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	19853236	Ferreira MA	2009-10-22	Am J Hum Genet	Sequence variants in three loci influence monocyte counts and erythrocyte volume.	Mean corpuscular hemoglobin	2,538 European ancestry individuals, 3,477 individuals	1,543 individuals	22q12.3	TMPRSS6	rs4820268-A	0.53	3E-10		0.15	[0.11-0.19] s.d. increase	Illumina, Perlegen [~ 2500000] (imputed)	N
870	chr22	37469590	37469591	rs4820268	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	22q12.3	TMPRSS6	rs4820268-?	NR	6E-6	(serum iron)			Illumina [315887]	N
870	chr22	37469592	37469593	rs137853120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs137853120-T	1.90000000000023E-4	6E-22		0.7707386	[0.61-0.93] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37469592	37469593	rs137853120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs137853120-T	1.92999999999999E-4	8E-22		0.639716	[0.5-0.78] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37469592	37469593	rs137853120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.3	TMPRSS6	rs137853120-T	1.95999999999974E-4	5E-10		0.474344	[0.32-0.63] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37469592	37469593	rs137853120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs137853120-T	1.9199999999997E-4	3E-26		0.8377972	[0.68-0.99] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37469592	37469593	rs137853120	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs137853120-T	1.97000000000003E-4	2E-14		0.600475	[0.45-0.75] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37470040	37470041	rs2076085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q12.3	TMPRSS6	rs2076085-A	0.537196	5E-34		0.027167533	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37470040	37470041	rs2076085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q12.3	TMPRSS6	rs2076085-A	0.537193	3E-27		0.02417247	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37470040	37470041	rs2076085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	8,526 Hispanic or Latin American individuals	NA	22q12.3	NR	rs2076085-C	0.460158	3E-11		0.10444	[0.074-0.135] SD units increase	Affymetrix, Illumina [26792043] (imputed)	N
870	chr22	37470040	37470041	rs2076085	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	22q12.3	TMPRSS6	rs2076085-A	0.5365	4E-32		0.04245495	[0.035-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	22q12.3	TMPRSS6	rs2413450-C	0.543	2E-6		0.08	[0.04-0.11] unit increase	Affymetrix [7435577] (imputed)	N
870	chr22	37470223	37470224	rs2413450	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	8,181 South Asian ancestry individuals	NA	22q12.3	NR	rs2413450-T	0.538123	5E-16		0.126252	[0.096-0.157] SD units decrease	Affymetrix, Illumina [28486451] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean corpuscular hemoglobin	6,883 European ancestry individuals	NA	22q12.3	TMPRSS6	rs2413450-?	0.459	4E-8		0.06	[NR] pg increase	NR [16536512] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q12.3	TMPRSS6	rs2413450-T	NR	4E-11	(Asian)	0.0039	[0.0027-0.0051] unit decrease	NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q12.3	TMPRSS6	rs2413450-?	NR	2E-43				NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	22q12.3	TMPRSS6	rs2413450-T	NR	2E-10	(Asian)	0.0019	[0.0013-0.0025] unit decrease	NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin concentration	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 European and African American individuals.	22q12.3	TMPRSS6	rs2413450-?	NR	1E-8				NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q12.3	TMPRSS6	rs2413450-?	NR	1E-8				NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hemoglobin levels	up to 40,258 European ancestry individuals, 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	22q12.3	TMPRSS6	rs2413450-?	NR	1E-8				Affymetrix, Illumina [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	22q12.3	TMPRSS6	rs2413450-A	NR	3E-6	(Asian)	0.193	[0.11-0.27] percentage decrease	NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Hematocrit	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian ancestry individuals.	16,389 European and African American individuals	22q12.3	TMPRSS6	rs2413450-?	NR	1E-8				NR [2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	23935956	Pistis G	2013-07-31	PLoS One	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera (founder/genetic isolate) individuals	619 Friuli Venezia Giulia (founder/genetic isolate) individuals, 16,145 European ancestry individuals	22q12.3	TMPRSS6	rs2413450-T	0.46	9E-6	(MCV)	0.0077	[0.0044-0.0110] unit decrease	Illumina [~ 2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	23935956	Pistis G	2013-07-31	PLoS One	Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.	Red blood cell traits	1,664 Val Borbera (founder/genetic isolate) individuals	619 Friuli Venezia Giulia (founder/genetic isolate) individuals, 16,145 European ancestry individuals	22q12.3	TMPRSS6	rs2413450-T	0.46	4E-7	(MCH)	0.0099	[0.0060-0.0138] unit decrease	Illumina [~ 2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	22q12.3	TMPRSS6	rs2413450-T	0.59	5E-6	(Ht)	0.204	[0.116-0.291] unit decrease	Illumina [561583]	N
870	chr22	37470223	37470224	rs2413450	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	TMPRSS6	rs2413450-T	NR	3E-41		0.01	[0.004-0.006] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	TMPRSS6	rs2413450-T	NR	9E-34		0.01	[0.0005-0.007] pg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37470223	37470224	rs2413450	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Hematocrit	24,167 European ancestry individuals	9,456 European ancestry individuals	22q12.3	TMPRSS6	rs2413450-T	NR	2E-13		0.17	[0.13-0.22] % decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
870	chr22	37470535	37470536	rs2076086	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q12.3	NR	rs2076086-T	0.368871	3E-572		0.09772	[0.094-0.101] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
870	chr22	37470603	37470604	rs2072860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	22q12.3		rs2072860-A	0.446193	3E-8		0.0211428	[0.014-0.029] unit increase	Illumina [13476323] (imputed)	N
870	chr22	37470603	37470604	rs2072860	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q12.3	TMPRSS6	rs2072860-A	0.536868	4E-19		0.019808425	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37470603	37470604	rs2072860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q12.3	NR	rs2072860-A	0.53848	5E-28		0.020817	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
870	chr22	37470603	37470604	rs2072860	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	8,188 South Asian ancestry individuals	NA	22q12.3	NR	rs2072860-G	0.539489	5E-14		0.118668	[0.088-0.15] SD units decrease	Affymetrix, Illumina [28492174] (imputed)	N
870	chr22	37470603	37470604	rs2072860	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q12.3		rs2072860-?	NR	5E-23				NR [~ 8900000] (imputed)	N
870	chr22	37471207	37471208	rs117576908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs117576908-A	0.00654100000000002	9E-23		0.0732499	[0.048-0.098] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37471207	37471208	rs117576908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs117576908-A	0.00654299999999997	4E-30		0.15569489	[0.13-0.18] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37471289	37471290	rs881144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.3	NR	rs881144-A	NR	8E-12		0.0251	[0.018-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr22	37471289	37471290	rs881144	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs881144-A	NR	6E-46		0.0533	[0.046-0.061] unit increase	Affymetrix [9000000] (imputed)	N
870	chr22	37471289	37471290	rs881144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs881144-A	0.122686	2E-29		0.0413662	[0.034-0.049] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37471289	37471290	rs881144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.3	TMPRSS6	rs881144-A	0.1227	8E-17		0.0709058	[0.064-0.077] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37471289	37471290	rs881144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs881144-A	0.122693	4E-44		0.04906391	[0.042-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37471289	37471290	rs881144	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs881144-A	0.122679	4E-15		0.0277222	[0.021-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
870	chr22	37471289	37471290	rs881144	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q12.3	NR	rs881144-A	NR	4E-11		0.039784	[0.027-0.052] unit increase	Affymetrix [16832071] (imputed)	N
870	chr22	37474078	37474079	rs855788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs855788-?	NR	1E-300				NR [~ 8900000] (imputed)	N
870	chr22	37480604	37480605	rs73160055	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs73160055-T	NR	4E-11		0.034	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
870	chr22	37484336	37484337	rs9607412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs9607412-C	0.417893	2E-18		0.0855587	[0.081-0.09] unit increase	Affymetrix [93095623] (imputed)	N
870	chr22	37484336	37484337	rs9607412	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	TMPRSS6	rs9607412-C	0.4166	3E-126		0.08547927	[0.078-0.092] unit increase	Affymetrix [~ 2500000] (imputed)	N
870	chr22	37484373	37484374	rs9610646	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q12.3	NR	rs9610646-?	NR	4E-10		0.02678	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
870	chr22	37484943	37484944	rs9610647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q12.3	NR	rs9610647-A	0.402729	5E-349				Affymetrix, Illumina [24246363] (imputed)	N
871	chr22	37490395	37490396	rs2543513	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs2543513-G	0.415732	4E-21		0.02465481	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37490691	37490692	rs2251655	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q12.3	TMPRSS6	rs2251655-T	0.4149	2E-99		0.07597849	[0.069-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37494914	37494915	rs2017764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q12.3	NR	rs2017764-A	NR	1E-9		0.0149	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
871	chr22	37494914	37494915	rs2017764	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs2017764-A	NR	8E-52		0.0378	[0.033-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr22	37495050	37495051	rs733655	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Hemoglobin levels	2,649 European ancestry individuals	NA	22q12.3	TMPRSS6	rs733655-C	0.251	7E-6		0.08	[0.05-0.12] unit decrease	Affymetrix [7435577] (imputed)	N
871	chr22	37496846	37496847	rs9619658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs9619658-T	0.337217	4E-48		0.037767004	[0.033-0.043] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37496846	37496847	rs9619658	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	TMPRSS6	rs9619658-T	0.3366	3E-113		0.0859393	[0.078-0.093] unit increase	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37497592	37497593	rs228907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228907-A	0.28193	5E-16		0.023220588	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37497592	37497593	rs228907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228907-A	0.281915	2E-12		0.0394944	[0.035-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37498025	37498026	rs17750152	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q12.3	NR	rs17750152-T	NR	1E-21		0.0251	[0.02-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr22	37501069	37501070	rs228910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228910-G	0.617286	2E-22		0.027128456	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37502993	37502994	rs144009759	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMPRSS6	rs144009759-?	NR	8E-11	(male)	4.63277	[NR] unit decrease	Affymetrix [NR] (imputed)	N
871	chr22	37502993	37502994	rs144009759	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMPRSS6	rs144009759-?	NR	1E-8		2.75366	[NR] unit decrease	Affymetrix [NR] (imputed)	N
871	chr22	37505551	37505552	rs228916	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (iron levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	22q12.3	TMPRSS6	rs228916-T	0.875	3E-8		0.086	[0.055-0.117] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
871	chr22	37506409	37506410	rs228917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228917-C	0.42752	6E-23		0.056332	[0.052-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37506409	37506410	rs228917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228917-C	0.427537	5E-22		0.0388474	[0.035-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37506409	37506410	rs228917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228917-C	0.427524	5E-25		0.023428377	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37506409	37506410	rs228917	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228917-C	0.42754	3E-14		0.017200073	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37506679	37506680	rs228918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	22q12.3	TMPRSS6	rs228918-C	0.4268	9E-40		0.04618045	[0.039-0.053] unit decrease	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37506991	37506992	rs228922	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228922-C	0.426896	9E-12		0.015597329	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37507428	37507428	rs144780051	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q12.3	TMPRSS6	rs144780051-CTG	0.297018	3E-19		0.0562987	[0.052-0.061] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37507641	37507642	rs228925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q12.3	TMPRSS6	rs228925-T	0.745447	7E-71		0.045672037	[0.041-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37508423	37508424	rs5756519	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q12.3	TMPRSS6	rs5756519-C	0.4272	6E-35		0.04432027	[0.037-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37508506	37508507	rs5756520	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	TMPRSS6	rs5756520-A	0.4271	4E-74		0.06523358	[0.058-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37509412	37509413	rs143210163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3	TMPRSS6	rs143210163-A	0.00643199999999999	9E-16		0.116871126	[0.088-0.145] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37510071	37510072	rs926331	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q12.3	TMPRSS6	rs926331-T	0.3058	4E-46		0.05533297	[0.048-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37511636	37511637	rs56912861	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q12.3		rs56912861-A	0.343021	5E-10		0.01663351	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37519863	37519864	rs5995385	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q12.3	IL2RB	rs5995385-C	0.5231	2E-16		0.02905811	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
871	chr22	37524618	37524619	rs228942	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Lack of premeditation	22,774 European ancestry individuals	NA	22q12.3	IL2RB	rs228942-T	0.1791	9E-7		0.056	[0.034-0.079] unit increase	Illumina [11455628] (imputed)	N
871	chr22	37531435	37531436	rs228953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	IL2RB	rs228953-A	0.436569	2E-24		0.023061013	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37531435	37531436	rs228953	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3	IL2RB	rs228953-A	0.436569	1E-23		0.022642275	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr22	37531435	37531436	rs228953	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	22q12.3	IL2RB	rs228953-G	0.57	2E-9				NR [> 9500000] (imputed)	N
871	chr22	37531435	37531436	rs228953	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q12.3		rs228953-?	NR	9E-28				NR [~ 8900000] (imputed)	N
871	chr22	37534033	37534034	rs2284033	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	22q12.3	IL2RB	rs2284033-?	0.56	2E-8	(additive model)	1.1904762	[1.12-1.27]	Illumina [123003]	N
871	chr22	37534033	37534034	rs2284033	20860503	Moffatt MF	2010-09-23	N Engl J Med	A large-scale, consortium-based genomewide association study of asthma.	Asthma	10,365 cases, 16,110 controls	NA	22q12.3	IL2RB	rs2284033-G	0.56	1E-8		1.12	[1.08-1.16]	Illumina [582892]	N
871	chr22	37544485	37544486	rs3218255	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	22q12.3	IL2RB	rs3218255-G	0.69	2E-7		4.0	[NR]	Affymetrix [up to 4467279] (imputed)	N
871	chr22	37545504	37545505	rs3218251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	IL2RB	rs3218251-A	0.268425	2E-13		0.018391877	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37545504	37545505	rs3218251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q12.3	IL2RB	rs3218251-A	0.268434	1E-9		0.0152257085	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37545504	37545505	rs3218251	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	22q12.3	IL2RB	rs3218251-A	0.27	7E-7		1.1	[1.06-1.14]	Illumina [133816] (imputed)	N
871	chr22	37545504	37545505	rs3218251	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q12.3	IL2RB	rs3218251-A	0.27	6E-6	(EA)	1.08	[1.04-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
871	chr22	37545504	37545505	rs3218251	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	22q12.3	IL2RB	rs3218251-A	0.25	2E-7		1.1325		Illumina [129464] (imputed)	N
871	chr22	37545504	37545505	rs3218251	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	22q12.3	IL2RB	rs3218251-A	0.25	6E-6		1.0987		Illumina [129464] (imputed)	N
871	chr22	37551606	37551607	rs743777	21829393	Plagnol V	2011-08-04	PLoS Genet	Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.	Type 1 diabetes	8,506 European ancestry cases, up to 10,596 European ancestry controls	NA	22q12.3	IL2RB	rs743777-G	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [NR]	N
871	chr22	37551606	37551607	rs743777	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	22q12.3	NR	rs743777-G	0.29	1E-6		1.09	[0.97-1.24]	Affymetrix [469557]	N
871	chr22	37559800	37559801	rs67843390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q12.3		rs67843390-?	NR	3E-9				NR [~ 8900000] (imputed)	N
871	chr22	37560591	37560592	rs229492	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q12.3		rs229492-?	NR	4E-13				NR [~ 8900000] (imputed)	N
871	chr22	37581421	37581422	rs229526	22493691	Eriksson N	2012-04-06	PLoS One	Novel associations for hypothyroidism include known autoimmune risk loci.	Hypothyroidism	3,736 European ancestry cases, 35,546 European ancestry controls	NA	22q12.3	C1QTNF6	rs229526-C	0.221	9E-6		1.216	[1.12-1.32]	Illumina [870065]	N
871	chr22	37581484	37581485	rs229527	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	22q12.3	C1QTNF6	rs229527-A	0.424	3E-30		1.11	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
871	chr22	37581484	37581485	rs229527	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	22q12.3	C1QTNF6	rs229527-A	0.429	1E-30		1.32	[1.26-1.38]	Illumina [8966411] (imputed)	N
871	chr22	37581484	37581485	rs229527	23612905	Zhao SX	2013-04-29	Hum Mol Genet	Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis.	Graves' disease	1,442 Han Chinese ancestry cases, 1,468 Han Chinese ancestry controls	7,891 Han Chinese ancestry cases, 8,351 Han Chinese ancestry controls	22q12.3	C1QTNF6, RAC2	rs229527-?	0.71	5E-20		1.23	[1.19-1.3]	Illumina [8019905] (imputed)	N
871	chr22	37581484	37581485	rs229527	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	22q12.3	C1QTNF6	rs229527-T	0.419	2E-16		1.38	[1.28-1.50]	Illumina [520460]	N
871	chr22	37581676	37581677	rs229528	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	22q12.3		rs229528-T	NR	2E-19		0.0903	[0.071-0.11] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
871	chr22	37583732	37583732	rs5845323	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q12.3	C1QTNF6	rs5845323-GC	0.425748	5E-11		0.014778135	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
871	chr22	37586671	37586672	rs2858483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	22q12.3		rs2858483-C	NR	7E-27		0.0938	[0.077-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
871	chr22	37586671	37586672	rs2858483	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	22q12.3	C1QTNF6	rs2858483-C	0.425467	1E-27		0.1004399	[0.082-0.119] unit increase	Affymetrix [7288503] (imputed)	N
871	chr22	37586791	37586792	rs2160908	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	22q12.3	NR	rs2160908-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
871	chr22	37587110	37587111	rs229533	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Type 1 diabetes	6,670 European ancestry cases, 22,308 European ancestry controls	NA	22q12.3	C1QTNF6	rs229533-C	0.433	7E-9		1.142		Illumina [252970]	N
871	chr22	37587110	37587111	rs229533	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	22q12.3	C1QTNF6, RAC2	rs229533-C	0.43	2E-8		1.11		Illumina [135870]	N
871	chr22	37591289	37591290	rs229540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	22q12.3		rs229540-?	NR	4E-31				NR [~ 8900000] (imputed)	N
871	chr22	37591317	37591318	rs229541	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	22q12.3		rs229541-?	NR	3E-16				NR [~ 8900000] (imputed)	N
871	chr22	37591317	37591318	rs229541	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	22q12.3	C1QTNF6	rs229541-?	NR	2E-7	(Hispanic)	1.27	[1.16-1.39]	Illumina [at least 5000000] (imputed)	N
871	chr22	37591317	37591318	rs229541	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	22q12.3	C1QTNF6	rs229541-?	NR	2E-7				Affymetrix, Illumina [841622] (imputed)	N
871	chr22	37591317	37591318	rs229541	18978792	Cooper JD	2008-11-02	Nat Genet	Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci.	Type 1 diabetes	3,561 European ancestry cases, 4,646 European ancestry controls	6,225 European ancestry cases, 6,946 European ancestry controls, 3,064 European ancestry trios from 2,828 families	22q12.3	C1QTNF6	rs229541-T	0.43	2E-8		1.11	[1.05-1.16]	Affymetrix [up to 335565]	N
871	chr22	37613308	37613309	rs13053175	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.1	RAC2	rs13053175-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
872	chr22	37622883	37622884	rs116118746	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs116118746-G	0.165468	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
872	chr22	37633850	37633851	rs9610686	31591516	Ricano-Ponce I	2019-10-07	Eur J Hum Genet	Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.	Celiac disease	12,567 European ancestry cases, 381 Hispanic cases, 14,013 European ancestry controls, 813 Hispanic controls	NA	22q13.1	RAC2	rs9610686-C	0.39	3E-8		1.11		Illumina [127855]	N
872	chr22	37638620	37638621	rs75375644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.1	RAC2	rs75375644-A	0.031453	5E-21		0.06168697	[0.049-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr22	37638620	37638621	rs75375644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.1	RAC2	rs75375644-A	0.0314449999999999	3E-11		0.04351702	[0.031-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
872	chr22	37638620	37638621	rs75375644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs75375644-C	0.969516	1E-11				Affymetrix, Illumina [17210439] (imputed)	N
872	chr22	37638620	37638621	rs75375644	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q13.1	NR	rs75375644-C	0.968507	5E-14		0.042344	[0.031-0.053] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
872	chr22	37647067	37647068	rs150582667	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	22q13.1	Intergenic	rs150582667-T	NR	2E-6		0.18752	[0.11-0.27] unit decrease	Illumina [13520550] (imputed)	N
872	chr22	37660544	37660545	rs118180161	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	22q13.1	NR	rs118180161-T	0.9819	5E-7		17.72	[10.81-24.63] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
872	chr22	37679486	37679487	rs10084630	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	22q13.1	C1QTNF6, RAC2, CYTH4, ELFN2	rs10084630-G	NR	9E-6	(ParVAS)	1.13	[0.64-1.62] unit increase	Illumina [586062]	N
872	chr22	37728253	37728254	rs739187	28836065	Hellwege JN	2017-08-23	Hum Genet	A multi-stage genome-wide association study of uterine fibroids in African Americans.	Uterine fibroids	3,999 African American cases, 4,764 African American controls	NA	22q13.1	CYTH4	rs739187-T	0.27	8E-9		1.23	[1.16-1.30]	Affymetrix, Illumina [17963051] (imputed)	N
872	chr22	37741051	37741052	rs60504186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	22q13.1	NR	rs60504186-?	NR	1E-6		0.0085648	[0.0051-0.012] unit increase	Affymetrix [805426] (imputed)	N
873	chr22	37862035	37862036	rs58474135	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	22q13.1		rs58474135-?	NR	5E-7		0.44	[0.27-0.61] unit increase	Affymetrix, Illumina [NR] (imputed)	N
874	chr22	37907068	37907069	rs2092172	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	22q13.1	CARD10	rs2092172-A	NR	4E-8	(EA)	0.009	[0.0051-0.0129] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
874	chr22	37907068	37907069	rs2092172	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	22q13.1	CARD10	rs2092172-A	NR	3E-12		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
874	chr22	37908462	37908462	rs113605227	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	22q13.1	CARD10	rs113605227-A	0.83	3E-15		0.00993	[0.0075-0.0124] unit decrease	Affymetrix [at least 8002429] (imputed)	N
874	chr22	37909538	37909539	rs56385951	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	22q13.1	CARD10	rs56385951-A	0.11	3E-24		0.03	unit increase	Affymetrix [8928767] (imputed)	N
874	chr22	37909538	37909539	rs56385951	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	22q13.1	CARD10	rs56385951-A		4E-17		0.047	[0.035-0.059] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
874	chr22	37909538	37909539	rs56385951	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	22q13.1	CARD10	rs56385951-A		2E-10	(EA)	0.046	[0.032-0.06] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
874	chr22	37910714	37910715	rs59032073	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	22q13.1	CARD10	rs59032073-A	0.096	4E-11		0.044	[0.03-0.058] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
874	chr22	37911189	37911190	rs6000759	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	22q13.1	CARD10	rs6000759-T	0.78	3E-20		0.0096	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
874	chr22	37918471	37918472	rs6000762	21307088	Khor CC	2011-02-09	Hum Mol Genet	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc area	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	22q13.1	CARD10	rs6000762-C	0.3	1E-8	(Asian)	0.059	[0.039-0.079] mm2 increase	Illumina [551808]	N
874	chr22	37919266	37919267	rs9607469	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	22q13.1	CARD10	rs9607469-A	0.23	7E-9	(Asian)	0.053	[0.035-0.071] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
874	chr22	37919266	37919267	rs9607469	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	22q13.1	CARD10	rs9607469-A	0.15	2E-6	(EA)	0.034	[0.020-0.048] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
874	chr22	37919266	37919267	rs9607469	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	22q13.1	CARD10	rs9607469-A	0.15	2E-13		0.041	[0.029-0.053] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
874	chr22	37919266	37919267	rs9607469	21307088	Khor CC	2011-02-09	Hum Mol Genet	Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area.	Optic disc area	2,132 Indian ancestry individuals, 2,313 Malay ancestry individuals	9,326 European ancestry individuals	22q13.1	CARD10	rs9607469-A	0.14	3E-12		0.051	[0.036-0.066] mm2 increase	Illumina [551808]	N
874	chr22	37921673	37921674	rs5995441	26486471	van Loon J	2015-10-21	Eur J Hum Genet	Genome-wide association studies identify genetic loci for low von Willebrand factor levels.	Low vWF levels	up to 1,635 European ancestry individuals with low vWF levels, up to 33,286 European ancestry individuals with normal vWF levels	NA	22q13.1	CARD10	rs5995441-?	NR	8E-7				Affymetrix, Illumina [~ 2600000] (imputed)	N
874	chr22	37928185	37928186	rs6000782	24768677	de Boer YS	2014-04-23	Gastroenterology	Genome-wide association study identifies variants associated with autoimmune hepatitis type 1.	Autoimmune hepatitis type-1	649 European ancestry cases, 13,436 European ancestry controls	451 European ancestry cases, 4,103 European ancestry controls	22q13.1	CARD10	rs6000782-?	0.04	3E-6		1.7	[1.40-2.10]	Illumina [254006]	N
874	chr22	37950267	37950268	rs73884086	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	22q13.1		rs73884086-A	0.129747	1E-8		0.0257758	[0.017-0.035] unit increase	Illumina [13478778] (imputed)	N
874	chr22	37961352	37961353	rs5756729	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q13.1	LGALS2	rs5756729-T	0.593	2E-26	(Galectin-2, LGALS2.3033.57.1)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
874	chr22	37966059	37966060	rs2281097	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.1	LGALS2	rs2281097-T	0.43390625	2E-20	(LGALS2, 3033_57_1)	0.23147205	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
874	chr22	37970425	37970426	rs5756738	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LGALS2	5,359 Icelandic ancestry individuals	NA	22q13.1		rs5756738-G	0.4371	5E-34		0.230348	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
874	chr22	37982011	37982012	rs12157904	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	22q13.1	LGALS2	rs12157904-G	0.07	2E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
875	chr22	38029722	38029723	rs12710562	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	22q13.1		rs12710562-G	NR	5E-20		0.0238	[0.019-0.029] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
875	chr22	38029722	38029723	rs12710562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs12710562-G	0.21021	4E-10				Affymetrix, Illumina [24649327] (imputed)	N
875	chr22	38029722	38029723	rs12710562	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	22q13.1	GGA1	rs12710562-A	NR	5E-6		0.02729	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
875	chr22	38059042	38059043	rs78684352	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs78684352-G	0.114976	4E-11				Affymetrix, Illumina [24246363] (imputed)	N
875	chr22	38066555	38066556	rs7285699	34743218	Drake I	2021-11-07	Diabetologia	The role of circulating galectin-1 in type 2 diabetes and chronic kidney disease: evidence from cross-sectional, longitudinal and Mendelian randomisation analyses.	Galectin-1 levels	4,086 individuals	NA	22q13.1		rs7285699-C	0.406	2E-11		0.16573	[0.12-0.21] unit decrease	Illumina [21575257] (imputed)	N
875	chr22	38069621	38069622	rs13057866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q13.1		rs13057866-A	NR	5E-11		0.0249	[0.017-0.032] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
875	chr22	38069621	38069622	rs13057866	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	22q13.1		rs13057866-A	0.222165	2E-12		0.0292582	[0.021-0.037] unit increase	Illumina [13479091] (imputed)	N
875	chr22	38071042	38071043	rs4820294	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	22q13.1	PDXP, LGALS1	rs4820294-A	0.35	5E-6	(multivariate)			Illumina [319818]	N
875	chr22	38071419	38071420	rs2071769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	22q13.1	NR	rs2071769-A	0.780499	1E-10		0.029096	[0.02-0.038] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
875	chr22	38077934	38077935	rs62236674	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.1	NR	rs62236674-T	NR	1E-11		0.0359	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
875	chr22	38098057	38098058	rs139953331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.1	NR	rs139953331-T	0.039458	2E-11		0.031461	[0.022-0.041] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
875	chr22	38102345	38102346	rs5750477	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	22q13.1		rs5750477-?	NR	1E-6		4.84	NR z score increase	Affymetrix [NR] (imputed)	N
875	chr22	38110449	38110450	rs4820299	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	22q13.1	TRIOBP	rs4820299-T	0.59	1E-10		6.46	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
875	chr22	38117942	38117943	rs5750482	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.1	Z83844.1	rs5750482-T	0.371	5E-12		0.0137	[0.0098-0.0176] unit decrease	Affymetrix [18391927] (imputed)	N
875	chr22	38117942	38117943	rs5750482	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q13.1	NR	rs5750482-C	0.628298	2E-10		0.013596	[0.0094-0.0178] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
875	chr22	38117942	38117943	rs5750482	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	22q13.1	TRIOBP, NOL12	rs5750482-T	0.3817	5E-11		0.1166	[0.082-0.151] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
875	chr22	38118804	38118805	rs1006139	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.1	NR	rs1006139-?	NR	4E-8	(left lateral ventricle)			NR [9227495] (imputed)	N
875	chr22	38122121	38122122	rs5756795	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	22q13.1	TRIOBP	rs5756795-C	45.05	1E-17	(additive)	1.04	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
875	chr22	38122121	38122122	rs5756795	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (low/mid frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	22q13.1	TRIOBP	rs5756795-T	0.556	3E-6	(EA)	0.0662	[0.039-0.094] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
875	chr22	38128283	38128284	rs58389158	31564434	Wells HRR	2019-09-26	Am J Hum Genet	GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank.	Adult hearing difficulty	87,056 British ancestry cases, 163,333 British ancestry controls	30,765 European ancestry individuals	22q13.1	TRIOBP	rs58389158-T	0.539	5E-12		0.0092	[0.0067-0.0117] unit decrease	Affymetrix [9740198] (imputed)	N
875	chr22	38128283	38128284	rs58389158	27764096	Hoffmann TJ	2016-10-20	PLoS Genet	A Large Genome-Wide Association Study of Age-Related Hearing Impairment Using Electronic Health Records.	Age-related hearing impairment	6,527 European ancestry cases, 45,882 European ancestry controls	481 Latino cases, 398 East Asian ancestry cases, 146 African American cases, 5,215 Latino controls, 5,040 East Asian ancestry controls, 2,133 African American controls	22q13.1	TRIOBP	rs58389158-?	0.421	2E-9	(EA)	1.132	[NR]	Affymetrix [9469183] (imputed)	N
875	chr22	38130384	38130385	rs13054052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	22q13.1	TRIOBP, NOL12	rs13054052-C	0.619347	6E-11		0.014957824	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
875	chr22	38131356	38131357	rs200045032	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	22q13.1	TRIOBP	rs200045032-T	0.04	3E-7	(recessive)	69.62	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
875	chr22	38132650	38132651	rs58847779	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		22q13.1	TRIOBP	rs58847779-?	NR	7E-7	(AA)	0.039	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
875	chr22	38138283	38138284	rs34134374	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.1	NR	rs34134374-T	0.289	1E-17				NR [9056863] (imputed)	N
875	chr22	38138283	38138284	rs34134374	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.1	NR	rs34134374-?	NR	8E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
875	chr22	38138378	38138379	rs4396807	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.1		rs4396807-C	0.37	2E-31		11.68	z score increase	Affymetrix [9061022] (imputed)	N
875	chr22	38138378	38138379	rs4396807	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q13.1		rs4396807-C	0.37	5E-22		9.65	z score increase	Affymetrix [9061022] (imputed)	N
875	chr22	38138378	38138379	rs4396807	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.1	NR	rs4396807-G	0.366799	3E-8		0.03596456	[0.023-0.049] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
875	chr22	38138378	38138379	rs4396807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q13.1		rs4396807-?	NR	7E-9				NR [~ 8900000] (imputed)	N
875	chr22	38138378	38138379	rs4396807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs4396807-C	0.3451	1E-10	(MTAG)	0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
875	chr22	38138378	38138379	rs4396807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs4396807-C	0.3447	5E-9	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
875	chr22	38138378	38138379	rs4396807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.1	Intergenic	rs4396807-C	0.3239	1E-10	(MTAG)	0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
875	chr22	38138378	38138379	rs4396807	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.1	Intergenic	rs4396807-C	0.3239	3E-8		0.0169	[0.011-0.023] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
875	chr22	38138378	38138379	rs4396807	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs4396807-C	NR	4E-8		5.51	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
876	chr22	38144617	38144618	rs5756805	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs5756805-T	NR	4E-8		5.484	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
876	chr22	38150189	38150190	rs12485175	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.1	NR	rs12485175-A	0.2935	1E-17				NR [9056863] (imputed)	N
876	chr22	38156182	38156183	rs1074407	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	22q13.1	TRIOBP	rs1074407-T	NR	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
876	chr22	38158520	38158521	rs10212058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	22q13.1		rs10212058-G	NR	3E-8		0.0147	[0.0094-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
876	chr22	38166271	38166272	rs13058615	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	22q13.1	NOL12, TRIOBP, H1F0, GCAT, GALR3, ANKRD54, EIF3L, MICALL1, POLR2F, PICK1, SLC16A8, BAIAP2L2, PLA2G6	rs13058615-?		9E-10				NR [7428630] (imputed)	N
876	chr22	38172212	38172213	rs3171656	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.1		rs3171656-A	0.34	6E-19		8.9	z score increase	Affymetrix [9061022] (imputed)	N
876	chr22	38175476	38175477	rs5756813	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	22q13.1	TRIOBP	rs5756813-?	NR	7E-12		0.0902	[0.064-0.116] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
876	chr22	38175476	38175477	rs5756813	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	22q13.1	TRIOBP	rs5756813-?	NR	5E-6		1.0747628	[1.04-1.11]	Affymetrix [up to 40000000] (imputed)	N
876	chr22	38175476	38175477	rs5756813	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q13.1	TRIOBP, H1F0	rs5756813-G	0.3749	5E-10		0.084	[0.056-0.112] unit increase	Affymetrix [~ 11900000] (imputed)	N
876	chr22	38175476	38175477	rs5756813	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	22q13.1	TRIOBP	rs5756813-G	0.39	5E-6	(EA)	0.012	[0.0061-0.0179] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
876	chr22	38175476	38175477	rs5756813	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	22q13.1	TRIOBP	rs5756813-G	0.39	1E-9		0.014	[0.010-0.018] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
876	chr22	38175476	38175477	rs5756813	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	22q13.1	CARD10	rs5756813-G	NR	8E-9		0.008	[0.0060-0.0100] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
876	chr22	38176269	38176270	rs73411546	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	22q13.1	NR	rs73411546-T	NR	4E-15		0.0615	[0.046-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr22	38176978	38176979	rs5750494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	22q13.1	TRIOBP	rs5750494-T	NR	1E-8		1.09571	[1.06-1.13]	Illumina [NR] (imputed)	N
876	chr22	38176978	38176979	rs5750494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	22q13.1	TRIOBP	rs5750494-T	NR	8E-7		1.10716	[1.07-1.15]	Illumina [11610548] (imputed)	N
876	chr22	38176978	38176979	rs5750494	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	22q13.1	TRIOBP	rs5750494-T	NR	1E-18		0.064	unit increase	Illumina [15409056] (imputed)	N
876	chr22	38176978	38176979	rs5750494	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	22q13.1	TRIOBP, H1F0	rs5750494-T	0.37	2E-16		0.0073	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
876	chr22	38179119	38179120	rs5750495	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	22q13.1	TRIOBP-H1F0	rs5750495-A	NR	4E-10		0.904114	[0.87-0.94]	Illumina [NR] (imputed)	N
876	chr22	38179472	38179473	rs13057133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.1	NR	rs13057133-C	0.699386	3E-15		0.00691515	[0.0051-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
876	chr22	38179472	38179473	rs13057133	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.1	NR	rs13057133-C	0.699386	3E-17		0.00833907	[0.0063-0.0103] unit increase	Affymetrix [16582965] (imputed)	N
876	chr22	38183846	38183847	rs4821712	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	22q13.1	NR	rs4821712-C		5E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
876	chr22	38183846	38183847	rs4821712	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	22q13.1	TRIOBP	rs4821712-C	0.37	6E-14				Affymetrix, Illumina [8002429] (imputed)	N
876	chr22	38183846	38183847	rs4821712	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	22q13.1	TRIOBP, H1F0	rs4821712-C	0.3804	3E-10		0.085	[0.057-0.113] unit increase	Affymetrix [~ 11900000] (imputed)	N
876	chr22	38184641	38184641	rs71324877	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	22q13.1	TRIOBP	rs71324877-G	0.36	5E-14		0.00719	[0.0053-0.0091] unit increase	Affymetrix [at least 8002429] (imputed)	N
876	chr22	38184850	38184851	rs6000889	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	22q13.1	TRIOBP	rs6000889-C	0.355	2E-12		0.094	[0.069-0.119] unit increase	Affymetrix, Illumina [NR] (imputed)	N
876	chr22	38187300	38187301	rs6000890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.1		rs6000890-?	NR	1E-19				NR [~ 8900000] (imputed)	N
876	chr22	38195595	38195596	rs8140423	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.1	NR	rs8140423-?	NR	8E-8		5.37	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
876	chr22	38195795	38195796	rs12160491	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	22q13.1		rs12160491-A	0.7113	1E-10		0.9257047	[0.90418656-0.947734924]	Affymetrix, Illumina [NR] (imputed)	N
876	chr22	38196572	38196573	rs5995498	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 5)	19,670 European ancestry individuals	NA	22q13.1		rs5995498-?	NR	1E-10				NR [9705931] (imputed)	N
876	chr22	38196759	38196760	rs7286550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q13.1	NR	rs7286550-G	0.701119	3E-9		0.00656192	[0.0041-0.009] unit increase	Affymetrix [16582621] (imputed)	N
876	chr22	38196759	38196760	rs7286550	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q13.1	NR	rs7286550-G	0.701119	3E-10		0.00765391	[0.005-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
876	chr22	38199363	38199364	rs6000897	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	22q13.1	NR	rs6000897-G	NR	4E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
876	chr22	38199363	38199364	rs6000897	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	22q13.1	NR	rs6000897-G	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
876	chr22	38199949	38199950	rs5756825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.1		rs5756825-?	NR	7E-13				NR [~ 8900000] (imputed)	N
876	chr22	38199949	38199950	rs5756825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.1		rs5756825-?	NR	9E-8				NR [~ 8900000] (imputed)	N
876	chr22	38202403	38202404	rs5845353	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.1	H1F0	rs5845353-C	0.560073	3E-9		0.013180693	[0.0088-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr22	38204088	38204089	rs710187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.1	GCAT	rs710187-T	0.558357	3E-9		0.0129243	[0.0089-0.017] unit increase	Affymetrix [93095623] (imputed)	N
876	chr22	38204258	38204259	rs2071910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	22q13.1	NR	rs2071910-T	NR	8E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr22	38204258	38204259	rs2071910	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.1	NR	rs2071910-T	NR	4E-14		0.0207	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
876	chr22	38205988	38205989	rs2285178	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q13.1		rs2285178-T	0.6989	2E-8		0.08772861	[0.054-0.121] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
876	chr22	38229334	38229335	rs62235072	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.1	NR	rs62235072-T	NR	5E-14		0.0427	[0.032-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr22	38240367	38240368	rs141002682	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q13.1	MIR658	rs141002682-G	0.942771	4E-10		0.00308842	[0.0021-0.0041] unit increase	Affymetrix [13995440] (imputed)	N
877	chr22	38277166	38277167	rs184901441	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.1	NR	rs184901441-A	4.82E-4	1E-12		0.424205	[0.31-0.54] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
877	chr22	38303154	38303155	rs5750508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.1		rs5750508-?	NR	6E-8				NR [~ 8900000] (imputed)	N
877	chr22	38304857	38304858	rs4254591	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.1	MICALL1	rs4254591-G	0.66169	1E-16		0.0162358	[0.012-0.02] unit decrease	NR [13737936] (imputed)	N
877	chr22	38304857	38304858	rs4254591	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs4254591-?	NR	5E-15		0.0176222	[0.013-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
877	chr22	38317136	38317137	rs12628891	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	22q13.1	NA	rs12628891-T	0.3186	6E-10		0.0115	[0.0078-0.0152] unit decrease	NR [~ 27400000] (imputed)	N
877	chr22	38323506	38323507	rs9610875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.1	MICALL1	rs9610875-T	0.244165	1E-18		0.02454989	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
877	chr22	38328596	38328597	rs34834842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.1	MICALL1	rs34834842-G	0.037408	1E-51		0.09558532	[0.083-0.108] unit increase	Affymetrix [93095623] (imputed)	N
877	chr22	38328596	38328597	rs34834842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.1	MICALL1	rs34834842-G	0.037409	5E-9		0.034731977	[0.023-0.046] unit increase	Affymetrix [93095623] (imputed)	N
877	chr22	38328596	38328597	rs34834842	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.1	MICALL1	rs34834842-G	0.0382	7E-18		0.08094431	[0.063-0.099] unit increase	Affymetrix [~ 2500000] (imputed)	N
877	chr22	38329284	38329285	rs3026629	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	22q13.1	C22orf23	rs3026629-A	0.3482	3E-8		0.011653287	[0.0075-0.0158] unit decrease	Affymetrix [11514654] (imputed)	N
877	chr22	38351684	38351685	rs9610884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.1		rs9610884-?	NR	8E-18				NR [~ 8900000] (imputed)	N
877	chr22	38371932	38371933	rs11912587	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (transitivity)	57 European ancestry individuals	NA	22q13.1	NR	rs11912587-A	NR	8E-8		5.37	z score increase	NR [9015039] (imputed)	N
877	chr22	38383236	38383237	rs149871701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.1	SOX10, POLR2F	rs149871701-G	0.00119499999999995	4E-9		0.20804988	[0.14-0.28] unit increase	Affymetrix [93095623] (imputed)	N
877	chr22	38397796	38397797	rs139896	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q13.1	NR	rs139896-C	0.648	5E-11		0.00739974	[0.0052-0.0096] unit increase	NR [9732723] (imputed)	N
877	chr22	38397796	38397797	rs139896	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	22q13.1	NR	rs139896-C	0.648	7E-9		0.015440351	[0.01-0.021] unit increase	NR [~ 10000000] (imputed)	N
878	chr22	38415541	38415542	rs11912649	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs11912649-?		3E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38415541	38415542	rs11912649	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	22q13.1	POLR2F	rs11912649-?	NR	7E-9		0.39	[0.25-0.53] unit decrease	Affymetrix [11100000] (imputed)	N
878	chr22	38427962	38427963	rs8142174	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	22q13.1	POLR2F	rs8142174-A	0.5638	8E-6		0.0254	[0.014-0.037] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
878	chr22	38448294	38448295	rs2413493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.1	PICK1	rs2413493-G	0.593118	8E-10		0.014169402	[0.0097-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
878	chr22	38448294	38448295	rs2413493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs2413493-C	0.399215	4E-10				Affymetrix, Illumina [17210439] (imputed)	N
878	chr22	38450135	38450136	rs5756894	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs5756894-?		8E-10	(Body of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38450135	38450136	rs5756894	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs5756894-?		4E-9	(Anterior corona radiata)			NR [8955960] (imputed)	N
878	chr22	38450135	38450136	rs5756894	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs5756894-?		3E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
878	chr22	38450619	38450620	rs2018980	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs2018980-?		6E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38464023	38464024	rs41307233	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs41307233-?		2E-8	(Retrolenticular part of internal capsule)			NR [8955960] (imputed)	N
878	chr22	38474951	38474952	rs1004763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs1004763-?		8E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38474951	38474952	rs1004763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs1004763-?		3E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
878	chr22	38474951	38474952	rs1004763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs1004763-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38474951	38474952	rs1004763	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs1004763-?		7E-10	(Genu of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38476275	38476276	rs8135665	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	22q13.1	SLC16A8	rs8135665-?	NR	6E-11	(EA)	1.14		Illumina [12023830] (imputed)	N
878	chr22	38476275	38476276	rs8135665	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	22q13.1	SLC16A8	rs8135665-T	0.21	2E-11		1.15	[1.11-1.19]	Affymetrix, Illumina [2442884] (imputed)	N
878	chr22	38477341	38477342	rs4289289	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs4289289-?		5E-8	(Anterior corona radiata)			NR [8955960] (imputed)	N
878	chr22	38477929	38477930	rs2235573	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	22q13.1	SLC16A8	rs2235573-G	0.507	9E-7		1.09	1.06-1.13	Illumina [at least 6887412] (imputed)	N
878	chr22	38477929	38477930	rs2235573	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioblastoma	6,191 European ancestry cases, 18,190 European ancestry controls.	NA	22q13.1	SLC16A8	rs2235573-G	0.507	2E-10		1.15	1.10-1.20	Illumina [at least 6790270] (imputed)	N
878	chr22	38481642	38481643	rs13058731	34518561	Urbanek ME	2021-09-13	Sci Rep	Genetic predisposition to tinnitus in the UK Biobank population.	Tinnitus (chronic, bothersome)	300 female European ancestry cases, 11,732 female European ancestry controls	NA	22q13.1		rs13058731-?	NR	7E-6				IDT xGen Exome Sequencing Research Panel v1.0	N
878	chr22	38483155	38483155	rs142739979	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs142739979-?		1E-8	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38483155	38483155	rs142739979	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	22q13.1	NR	rs142739979-?		5E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
878	chr22	38483155	38483155	rs142739979	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs142739979-?		9E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38483171	38483171	rs132924	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	22q13.1	BAIAP2L2	rs132924-TTCATGGGTG	34.64	2E-13	(additive)	1.04	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
878	chr22	38485063	38485064	rs62235125	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs62235125-?		5E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
878	chr22	38487001	38487002	rs132929	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	22q13.1		rs132929-?	NR	8E-11		6.499841	z score increase	Affymetrix [NR] (imputed)	N
878	chr22	38487028	38487029	rs132930	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs132930-?		8E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38499869	38499869	rs72220602	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs72220602-?		9E-9	(Genu of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38501406	38501407	rs5750538	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs5750538-?		5E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
878	chr22	38503478	38503479	rs12484232	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs12484232-?		4E-8	(Posterior thalamic radiation)			NR [8955960] (imputed)	N
878	chr22	38503478	38503479	rs12484232	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs12484232-?		3E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
879	chr22	38537111	38537112	rs2005974	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	22q13.1	NR	rs2005974-?	NR	3E-23				Affymetrix, Illumina [7850345] (imputed)	N
879	chr22	38539419	38539420	rs11570645	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.1	PLA2G6	rs11570645-A	0.9424	1E-11		0.0276	[0.02-0.036] unit increase	Affymetrix [18391927] (imputed)	N
879	chr22	38544297	38544298	rs2284063	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	22q13.1	PLA2G6	rs2284063-A	0.5753	5E-9	(HIS)	0.0801	[0.053-0.107] unit decrease	Illumina [~ 200000]	N
879	chr22	38544297	38544298	rs2284063	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	22q13.1	PLA2G6	rs2284063-A	0.5568	8E-8		0.0523	[0.033-0.071] unit decrease	Illumina [~ 200000]	N
879	chr22	38544297	38544298	rs2284063	28212542	Ransohoff KJ	2017-02-09	Oncotarget	Two-stage genome-wide association study identifies a novel susceptibility locus associated with melanoma.	Melanoma	4,842 European ancestry cases, 286,565 European ancestry controls	1,804 European ancestry cases, 1,026 European ancestry controls	22q13.1	PLA2G6	rs2284063-?	0.64	2E-9		1.2048193	[NR]	Illumina [at least 560000] (imputed)	N
879	chr22	38544297	38544298	rs2284063	19578365	Falchi M	2009-07-05	Nat Genet	Genome-wide association study identifies variants at 9p21 and 22q13 associated with development of cutaneous nevi.	Cutaneous nevi	1,524 European ancestry twins	4,107 European ancestry individuals, 3,131 European ancestry cases, 4,276 European ancestry controls	22q13.1	PLA2G6	rs2284063-G	0.35	3E-8		0.08	[-0.002-0.16] log nevus count decrease	Illumina [297108]	N
879	chr22	38544297	38544298	rs2284063	19578364	Bishop DT	2009-07-05	Nat Genet	Genome-wide association study identifies three loci associated with melanoma risk.	Melanoma	1,539 European ancestry cases, 3,917 European ancestry controls	2,312 European ancestry cases, 1,867 European ancestry controls	22q13.1	intergenic	rs2284063-?	0.37	2E-9		1.2	[1.14-1.28]	Illumina [~ 317000]	N
879	chr22	38545618	38545619	rs6001027	21983787	Barrett JH	2011-10-09	Nat Genet	Genome-wide association study identifies three new melanoma susceptibility loci.	Melanoma	2,804 European ancestry cases, 7,618 European ancestry controls	5,551 European ancestry cases, 7,449 European ancestry controls	22q13.1	PLA2G6	rs6001027-?	0.65	2E-6		1.18	[1.09-1.27]	Illumina [594997]	N
879	chr22	38545941	38545942	rs132941	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	22q13.1	BAIAP2L2	rs132941-T	0.548922	9E-23		1.0995	NR	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38546032	38546033	rs5756931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.1	PLA2G6	rs5756931-C	0.389412	3E-10		0.014577185	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
879	chr22	38546032	38546033	rs5756931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs5756931-T	NR	3E-10		0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38546032	38546033	rs5756931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs5756931-T	0.625	1E-9	(EA)	0.027	unit increase	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38546032	38546033	rs5756931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs5756931-T	NR	3E-6		0.017	unit decrease	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38546032	38546033	rs5756931	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs5756931-T	0.625	3E-6	(EA)	0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38546032	38546033	rs5756931	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.1	PLA2G6	rs5756931-C	0.40	3E-8		0.02	[NR] mg/dL decrease	NR [NR] (imputed)	N
879	chr22	38546032	38546033	rs5756931	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	22q13.1	PLA2G6	rs5756931-C	0.4	4E-8		1.54	[0.8-2.28] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
879	chr22	38556259	38556260	rs6001031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q13.1		rs6001031-G	NR	3E-13		0.0127	[0.0094-0.016] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
879	chr22	38563470	38563471	rs132985	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	22q13.1	PLA2G6	rs132985-?	NR	2E-28				Affymetrix, Illumina [7850345] (imputed)	N
879	chr22	38563470	38563471	rs132985	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	22q13.1	PLA2G6	rs132985-?	NR	3E-18	(Han & Eskin random effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
879	chr22	38568832	38568833	rs738321	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	22q13.1		rs738321-C	NR	7E-14		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38568832	38568833	rs738321	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	PLA2G6	rs738321-C	0.62	1E-13	(EA)	1.0526316	[1.03-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
879	chr22	38569005	38569006	rs738322	21478494	Nan H	2011-04-09	Hum Mol Genet	Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.	Cutaneous nevi	9,136 European ancestry individuals	3,581 European ancestry individuals	22q13.1	PLA2G6	rs738322-G	0.46	1E-6		0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [2318094] (imputed)	N
879	chr22	38570312	38570313	rs4820318	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	NR	rs4820318-A	0.3753	1E-13	(EA)	0.0475	[0.035-0.06] unit decrease	Illumina [~ 11800000] (imputed)	N
879	chr22	38572525	38572526	rs133015	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q13.1	NR	rs133015-G	0.44	5E-10		0.0285	[0.019-0.038] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
879	chr22	38572525	38572526	rs133015	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q13.1	PLA2G6	rs133015-C	0.559937	2E-26		0.0205714	[0.017-0.024] unit decrease	Affymetrix [NR] (imputed)	N
879	chr22	38572525	38572526	rs133015	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q13.1	PLA2G6	rs133015-C	0.559998	7E-24		0.020012	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
879	chr22	38573034	38573035	rs133019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs133019-G	0.471065	5E-11				Affymetrix, Illumina [23472807] (imputed)	N
879	chr22	38575498	38575499	rs133027	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs133027-CT	NR	1E-18		0.034	unit increase	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38575498	38575499	rs133027	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs133027-CT	0.56	2E-16	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38575498	38575499	rs133027	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs133027-CT	NR	2E-12		0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38575498	38575499	rs133027	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.1	NR	rs133027-CT	0.56	9E-11	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
879	chr22	38576825	38576826	rs2267370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.1		rs2267370-?	NR	6E-9				NR [~ 8900000] (imputed)	N
879	chr22	38577514	38577515	rs2277844	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q13.1	NR	rs2277844-A	0.559922	3E-10		0.012113	[0.0084-0.0159] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
879	chr22	38577514	38577515	rs2277844	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	22q13.1	PLA2G6	rs2277844-A	NR	9E-10				NR [25015711] (imputed)	N
879	chr22	38580370	38580371	rs3761444	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	22q13.1		rs3761444-A	NR	5E-10		1.1174432	NR	Affymetrix [7846216] (imputed)	N
879	chr22	38580370	38580371	rs3761444	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	22q13.1	PLA2G6	rs3761444-G	0.453064	4E-41				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38580916	38580917	rs13056506	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q13.1	CARD10, PLA2G6, MAFF, TMEM184B	rs13056506-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38581862	38581862	rs60603980	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	22q13.1		rs60603980-TC	NR	9E-7		1.049318	[1.03-1.07]	Affymetrix [7846216] (imputed)	N
879	chr22	38594667	38594668	rs2899297	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q13.1	MAFF	rs2899297-A	0.5479	1E-16		0.0225	[0.017-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
879	chr22	38595259	38595260	rs5750561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	22q13.1		rs5750561-A	0.401445	2E-14		0.0278352	[0.021-0.035] unit decrease	NR [11722792] (imputed)	N
879	chr22	38595259	38595260	rs5750561	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q13.1	MAFF	rs5750561-A	0.404478	8E-9		0.015197	[0.01-0.02] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
879	chr22	38595410	38595411	rs3761445	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and triglycerides (pairwise)	268,505 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	22q13.1	PLA2G6-MAFF	rs3761445-G	0.4115	5E-18				Affymetrix, Illumina [2331072] (imputed)	N
879	chr22	38595410	38595411	rs3761445	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and HDL-C (pairwise)	277,811 European ancestry individuals, 10,022 East Asian, South Asian and African American ancestry individuals	NA	22q13.1	PLA2G6-MAFF	rs3761445-G	0.4115	2E-11				Affymetrix, Illumina [2331072] (imputed)	N
879	chr22	38595410	38595411	rs3761445	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	22q13.1	PLA2G6	rs3761445-A	0.615	3E-12	(Trans-ethnic initial)	0.0232	[0.017-0.03] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
879	chr22	38595410	38595411	rs3761445	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	22q13.1	PLA2G6, PICK1	rs3761445-G	0.41	3E-9	(men)	0.037	[0.025-0.049] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
879	chr22	38595410	38595411	rs3761445	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	22q13.1	PLA2G6, PICK1	rs3761445-G	0.41	2E-7		0.024	[0.014-0.034] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
879	chr22	38595410	38595411	rs3761445	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	22q13.1	PICK1, PLA2G6	rs3761445-G	0.4	9E-8	(European men)	0.037	[0.023-0.051] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
879	chr22	38595410	38595411	rs3761445	26833246	Lu Y	2016-02-01	Nat Commun	New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.	Body fat percentage	Up to 31,457 European ancestry men, up to 35,030 European ancestry women, up to 8,259 Indian Asian ancestry men, up to 1,030 Indian Asian ancestry women, 973 Korean ancestry men, 1,360 Korean ancestry women, 154 African American men, 262 African American women	Up to 12,480 European ancestry men, up to 10,055 European ancestry women, 315 Jamaican ancestry men, 774 Jamaican ancestry women	22q13.1	PICK1, PLA2G6	rs3761445-G	0.4	1E-6	(European)	0.024	[0.014-0.034] body fat % increase	Affymetrix, Illumina, Perlegen [at least 1958375] (imputed)	N
879	chr22	38598233	38598234	rs2267372	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	22q13.1	MAFF	rs2267372-A	0.400194	4E-17		0.00328828	[0.0025-0.0041] unit decrease	Affymetrix [13995440] (imputed)	N
879	chr22	38598233	38598234	rs2267372	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	22q13.1	MAFF	rs2267372-A	0.4007	5E-21		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
879	chr22	38599363	38599364	rs4821764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q13.1		rs4821764-A	NR	8E-17		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	22q13.1		rs4821764-G	0.42	2E-29		0.023	mmol/L decrease	NR [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	22q13.1		rs4821764-G	0.42	4E-69				NR [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	22q13.1		rs4821764-G	0.42	9E-29		0.021	mmol/L increase	NR [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	22q13.1		rs4821764-G	0.42	3E-29		0.017	% increase	NR [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	22q13.1		rs4821764-G	0.42	7E-17		0.017	U/L decrease	NR [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q13.1	MAFF	rs4821764-A	0.58	6E-12		6.87	z-score increase	Affymetrix [4312306] (imputed)	N
879	chr22	38599363	38599364	rs4821764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.1	PLA2G6, MAFF	rs4821764-A	0.580742	3E-10		0.014367597	[0.0099-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
879	chr22	38599363	38599364	rs4821764	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	22q13.1	MAFF	rs4821764-A	0.579	5E-12		0.365	[0.26-0.47] unit decrease	Affymetrix [NR] (imputed)	N
879	chr22	38599363	38599364	rs4821764	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q13.1	NR	rs4821764-?	NR	8E-9	(male)	0.15173	[0.1-0.2] unit decrease	Affymetrix [7794483] (imputed)	N
879	chr22	38599363	38599364	rs4821764	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q13.1	NR	rs4821764-?	NR	2E-12		0.15033	[0.11-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
879	chr22	38599766	38599767	rs4820323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	22q13.1		rs4820323-G	NR	5E-18		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
879	chr22	38599766	38599767	rs4820323	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q13.1	NR	rs4820323-G	0.5841	4E-8		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
879	chr22	38599766	38599767	rs4820323	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q13.1	MAFF	rs4820323-C	0.4195	5E-11	(EA)	0.0023	[0.0015-0.0031] unit increase	Affymetrix [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q13.1	MAFF	rs4820323-G	NR	5E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q13.1	MAFF	rs4820323-G	NR	4E-13				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q13.1	MAFF	rs4820323-G	NR	8E-15				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q13.1	MAFF	rs4820323-G	NR	4E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q13.1	MAFF	rs4820323-G	NR	8E-11		0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q13.1	MAFF	rs4820323-G	NR	7E-6	(EA)	0.012	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	22q13.1	MAFF	rs4820323-G	NR	1E-9		0.011	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q13.1	MAFF	rs4820323-G	NR	5E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	22q13.1	MAFF	rs4820323-G	NR	2E-9				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q13.1	MAFF	rs4820323-G	NR	2E-9				Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	22q13.1	MAFF	rs4820323-G	NR	1E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q13.1	MAFF	rs4820323-G	NR	5E-7		0.004	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599766	38599767	rs4820323	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	22q13.1	MAFF	rs4820323-G	NR	1E-7	(EA)	0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
879	chr22	38599856	38599857	rs4820324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q13.1		rs4820324-C	NR	3E-19		0.0147	[0.012-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
879	chr22	38599856	38599857	rs4820324	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Fasting plasma glucose	2,732 Kuwaiti ancestry individuals	NA	22q13.1	MAFF	rs4820324-?	NR	9E-7		4.915	NR unit decrease	Illumina [up to 1520000] (imputed)	N
879	chr22	38599856	38599857	rs4820324	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	22q13.1	MAFF	rs4820324-C	0.5902	1E-25		0.0023	[0.0017-0.0029] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
879	chr22	38600541	38600542	rs2267373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	22q13.1		rs2267373-C	0.419305	1E-8		0.0225939	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
879	chr22	38600541	38600542	rs2267373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	22q13.1		rs2267373-C	0.419305	3E-8		0.0220506	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
879	chr22	38600541	38600542	rs2267373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	22q13.1		rs2267373-C	0.419305	2E-8		0.0227766	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
879	chr22	38600541	38600542	rs2267373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	22q13.1		rs2267373-T	NR	4E-24		0.0208	[0.017-0.025] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
879	chr22	38600541	38600542	rs2267373	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Matrix metalloproteinase-3 levels	21,758 European ancestry individuals	9,173 individuals	22q13.1		rs2267373-T	0.58	1E-12		0.0557	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
879	chr22	38600541	38600542	rs2267373	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q13.1	PLA2G6	rs2267373-C	0.419307	2E-26		0.021551	[0.018-0.026] unit decrease	Affymetrix [NR] (imputed)	N
879	chr22	38600541	38600542	rs2267373	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	22q13.1	MAFF	rs2267373-C	0.3949	3E-10		6.318	NR z score increase	Illumina [26237160] (imputed)	N
879	chr22	38600541	38600542	rs2267373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.1		rs2267373-?	NR	3E-17				NR [~ 8900000] (imputed)	N
879	chr22	38601230	38601231	rs2267375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	22q13.1		rs2267375-G	0.419387	2E-10		0.0253209	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
879	chr22	38601230	38601231	rs2267375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	22q13.1		rs2267375-G	0.419387	1E-9		0.0244001	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
879	chr22	38601230	38601231	rs2267375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	22q13.1		rs2267375-G	0.419391	9E-9		0.0224317	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
879	chr22	38601230	38601231	rs2267375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	22q13.1		rs2267375-G	0.419401	4E-8		0.0224771	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
879	chr22	38601230	38601231	rs2267375	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	22q13.1		rs2267375-G	0.419387	4E-9		0.0234592	[0.016-0.031] unit increase	NR [11722792] (imputed)	N
879	chr22	38601230	38601231	rs2267375	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	22q13.1	MAFF	rs2267375-G	0.42	5E-13		7.22	z-score increase	Affymetrix [4311822] (imputed)	N
879	chr22	38601230	38601231	rs2267375	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.1	PLA2G6, MAFF	rs2267375-T	0.580482	1E-9		0.013819042	[0.0094-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
879	chr22	38601430	38601430	rs55951234	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.1		rs55951234-C	0.420124	4E-8		0.0224085	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
879	chr22	38601430	38601430	rs55951234	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	22q13.1	MAFF, PLA2G6	rs55951234-?	NR	8E-18		0.0229	[0.018-0.028] unit decrease	Affymetrix [5701386] (imputed)	N
879	chr22	38601430	38601430	rs55951234	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q13.1	MAFF	rs55951234-CCT	0.59	2E-14		0.0023	[0.0017-0.0029] unit decrease	Affymetrix [NR] (imputed)	N
879	chr22	38601430	38601430	rs55951234	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q13.1	MAFF	rs55951234-?	0.4087	2E-22		0.0268	[0.021-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
879	chr22	38602139	38602140	rs11914181	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.1	MAFF	rs11914181-C	0.550712	1E-10		0.014264676	[0.0099-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
879	chr22	38602139	38602140	rs11914181	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.1	NR	rs11914181-C	0.550175	3E-14		0.014358	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
879	chr22	38602139	38602140	rs11914181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.1		rs11914181-?	NR	2E-13				NR [~ 8900000] (imputed)	N
879	chr22	38603571	38603586	rs139551207	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.1	MAFF	rs139551207-C	0.537579	7E-10		0.01369484	[0.0093-0.018] unit increase	Affymetrix [93095623] (imputed)	N
879	chr22	38606988	38606989	rs8139952	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs8139952-A	0.525776	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
879	chr22	38607534	38607534	rs11450220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q13.1		rs11450220-TG	NR	3E-18		0.0114	[0.0089-0.0139] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
879	chr22	38607534	38607534	rs11450220	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	22q13.1	MAFF	rs11450220-?	NR	6E-9		0.01754599	[0.012-0.023] unit decrease	Illumina [27896057] (imputed)	N
879	chr22	38612603	38612604	rs34066050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	22q13.1	MAFF	rs34066050-G	NR	3E-10		0.0195291	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
879	chr22	38628305	38628306	rs7289126	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Percent mammographic density	7,916 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	22q13.1	TMEM184B, PLA2G6	rs7289126-A	0.4	5E-9		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr22	38628305	38628306	rs7289126	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	22q13.1	TMEM184B, PLA2G6	rs7289126-A	0.4	3E-8		0.11	[0.071-0.149] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr22	38634265	38634266	rs8142686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	22q13.1	TMEM184B	rs8142686-T	NR	1E-11		0.0210948	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
879	chr22	38634265	38634266	rs8142686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	22q13.1	TMEM184B	rs8142686-T	NR	3E-9		0.0185127	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
880	chr22	38787688	38787689	rs138361	31855235	McComish BJ	2019-12-19	JAMA Ophthalmol	Association of Genetic Variation With Keratoconus.	Keratoconus	522 European ancestry cases, 655 European ancestry controls	818 European ancestry cases, 3,858 European ancestry controls	22q13.1	CSNK1E	rs138361	NR	7E-7		4.955	[NR] z score decrease	Illumina [6252612] (imputed)	N
880	chr22	38789935	38789936	rs138366	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	22q13.1	CSNK1E	rs138366-A	0.5004	2E-7		0.5963	[0.4-0.79]	Illumina [281811]	N
881	chr22	38809548	38809549	rs138395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	22q13.1		rs138395-T	NR	1E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
881	chr22	38817046	38817047	rs11703948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q13.1		rs11703948-?	NR	2E-8				NR [~ 8900000] (imputed)	N
881	chr22	38817046	38817047	rs11703948	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.1		rs11703948-A	0.9026	1E-12		0.0168	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
881	chr22	38817046	38817047	rs11703948	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.1	Intergenic	rs11703948-A	0.9026	5E-15	(MTAG)	0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
881	chr22	38817046	38817047	rs11703948	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.1	Intergenic	rs11703948-A	0.8974	1E-8	(MTAG)	0.0215	[0.014-0.029] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
881	chr22	38817458	38817459	rs13057446	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs13057446-A	0.0934	6E-16	(MTAG)	0.0229	[0.017-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
881	chr22	38817856	38817857	rs66792787	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs66792787-A	0.9067	1E-11	(MTAG)	0.0209	[0.015-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
881	chr22	38819949	38819949	rs397822879	33501934	Suzuki K	2021-01-27	Inflamm Bowel Dis	Genetic Background of Mesalamine-induced Fever and Diarrhea in Japanese Patients with Inflammatory Bowel Disease.	Fever in mesalamine-treated irritable bowel disease	90 Japanese ancestry cases, 1,433 Japanese ancestry controls	22 Japanese ancestry cases, 766 Japanese ancestry controls	22q13.1	NR	rs397822879-TG	0.0823	1E-7		2.76	[2.39-3.14]	NR [7215020] (imputed)	N
881	chr22	38826798	38826799	rs11704277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.1	Intergenic	rs11704277-C	0.9066	4E-9		0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
881	chr22	38826798	38826799	rs11704277	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	22q13.1	Intergenic	rs11704277-C	0.9062	3E-8		0.0216	[0.014-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
881	chr22	38831660	38831661	rs7291841	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	22q13.1	KCNJ4	rs7291841-A	0.5412	2E-8		0.012742966	[0.0083-0.0172] unit decrease	Affymetrix [11514463] (imputed)	N
881	chr22	38832111	38832112	rs2267386	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	22q13.1	KCNJ4	rs2267386-?	0.024	1E-6	(EA, Inherited)	3.12	[1.93-5.05]	Illumina [2421290] (imputed)	N
881	chr22	38851391	38851392	rs196064	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	22q13.1	KCNJ4	rs196064-C	0.633	1E-20		0.049	[0.039-0.059] unit increase	Affymetrix [~ 9000000] (imputed)	N
881	chr22	38851391	38851392	rs196064	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	22q13.1	KCNJ4	rs196064-C	0.631	7E-10	(women)	0.045	[0.031-0.059] unit increase	Affymetrix [~ 9000000] (imputed)	N
881	chr22	38851391	38851392	rs196064	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	22q13.1	KCNJ4	rs196064-C	0.631	1E-11	(men)	0.052	[0.036-0.068] unit increase	Affymetrix [~ 9000000] (imputed)	N
881	chr22	38851674	38851675	rs118047999	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q13.1	KCNJ4, KDELR3	rs118047999-C	0.2459	2E-8		1.0238807		Affymetrix [11880941] (imputed)	N
881	chr22	38871890	38871891	rs138426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	22q13.1		rs138426-A	0.695036154	2E-11		0.1583257	[0.11-0.2] unit increase	Illumina [13406905] (imputed)	N
881	chr22	38871890	38871891	rs138426	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	22q13.1		rs138426-A	NR	5E-13		0.1541	[0.11-0.2] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
881	chr22	38871890	38871891	rs138426	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	22q13.1		rs138426-A	0.708958158	2E-12		1.1881915	[1.132432352-1.246696258]	Illumina [8919992] (imputed)	N
881	chr22	38874395	38874396	rs138430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	22q13.1		rs138430-T	NR	4E-8		0.0464	[0.03-0.063] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
881	chr22	38877460	38877461	rs12004	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	22q13.1	KDELR3	rs12004-?		1E-10		1.07	[1.04-1.09]	Affymetrix, Illumina [43000000] (imputed)	N
881	chr22	38879009	38879010	rs2071887	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q13.1	KDELR3	rs2071887-T	0.655196	2E-14		0.0160194	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
881	chr22	38879939	38879940	rs763121	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	22q13.1	DMC1, DDX17	rs763121-G	0.36	2E-13		0.16	[0.12-0.2] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
881	chr22	38891576	38891577	rs145252036	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	22q13.1		rs145252036-?	NR	4E-10				Illumina [1128286]	N
881	chr22	38901093	38901094	rs1837988	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	22q13.1	DDX17	rs1837988-G	NR	2E-8		0.0196501	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
881	chr22	38901093	38901094	rs1837988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	22q13.1		rs1837988-?	NR	1E-23				NR [~ 8900000] (imputed)	N
881	chr22	38903821	38903822	rs398101759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q13.1		rs398101759-G	NR	4E-11		0.0141	[0.01-0.0182] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
881	chr22	38923674	38923675	rs5757126	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.1	NR	rs5757126-C	0.287769	1E-23		0.020156	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
882	chr22	38933739	38933740	rs73157142	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	22q13.1	NR	rs73157142-A	NR	2E-10		0.036	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
882	chr22	38938935	38938936	rs13054906	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs13054906-T	0.1767	1E-8	(MTAG)	0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
882	chr22	38938935	38938936	rs13054906	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs13054906-T	0.1769	4E-9	(MTAG)	0.0127	[0.0084-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
882	chr22	38942297	38942299	rs386821292	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs386821292-?	NR	6E-15		0.0155901	[0.011-0.02] unit increase	Affymetrix [20259828] (imputed)	N
882	chr22	38947834	38947835	rs5757133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.1	DMC1	rs5757133-T	0.286187	4E-13		0.017734153	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr22	38947834	38947835	rs5757133	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs5757133-?	NR	2E-32		0.0254855	[0.021-0.03] unit increase	Affymetrix [20259828] (imputed)	N
882	chr22	38947834	38947835	rs5757133	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	18,421 East Asian ancestry individuals	38,060 East Asian ancestry individuals	22q13.1	PLA2G6	rs5757133-T	0.38	4E-10	(BMI adjusted)	0.0363	[0.024-0.049] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
882	chr22	38954702	38954703	rs9622830	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q13.1	DMC1	rs9622830-C	0.645788	5E-16		0.0162347	[0.012-0.02] unit increase	Affymetrix [NR] (imputed)	N
882	chr22	38991552	38991553	rs183544847	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	LOC646851	rs183544847-G	0.999	3E-6	(AA)	0.384	unit increase	Illumina [NR] (imputed)	N
882	chr22	38993369	38993370	rs5757162	34957435	Bonfiglio F	2021-12-08	Cell Genom	GWAS of stool frequency provides insights into gastrointestinal motility and irritable bowel syndrome.	Stool frequency	167,875 European ancestry individuals	NA	22q13.1		rs5757162-T	0.286	4E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [8817117] (imputed)	N
882	chr22	39009016	39009017	rs5750643	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs5750643-?	NR	3E-31		0.0243583	[0.02-0.029] unit increase	Affymetrix [20259828] (imputed)	N
882	chr22	39009134	39009135	rs5750644	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.1	FAM227A	rs5750644-T	0.273742	2E-11		0.016717147	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr22	39016181	39016182	rs4821797	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.1	FAM227A	rs4821797-T	0.66906	6E-34		0.0240344	[0.02-0.028] unit increase	NR [13737936] (imputed)	N
882	chr22	39019852	39019853	rs5757184	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q13.1	FAM227A	rs5757184-C	0.884497	2E-10		0.00222216	[0.0015-0.0029] unit decrease	Affymetrix [13995440] (imputed)	N
882	chr22	39032775	39032776	rs34040804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.1	FAM227A	rs34040804-C	0.354874	4E-17		0.020455461	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr22	39032775	39032776	rs34040804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.1	FAM227A	rs34040804-C	0.354789	1E-19		0.0208467	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr22	39032775	39032776	rs34040804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.1	FAM227A	rs34040804-C	0.35477	3E-14		0.018146178	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
882	chr22	39037551	39037552	rs4821802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	22q13.1		rs4821802-G	NR	9E-37		0.0319	[0.027-0.037] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
882	chr22	39042220	39042221	rs7289855	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.1	NR	rs7289855-T	0.28685	8E-15		0.016446	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
882	chr22	39042220	39042221	rs7289855	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.1		rs7289855-?	NR	6E-15				NR [~ 8900000] (imputed)	N
882	chr22	39044426	39044427	rs7290979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.1		rs7290979-?	NR	2E-34				NR [~ 8900000] (imputed)	N
882	chr22	39044426	39044427	rs7290979	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs7290979-?	NR	3E-34		0.0261582	[0.022-0.031] unit increase	Affymetrix [20259828] (imputed)	N
883	chr22	39060472	39060473	rs5757222	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs5757222-T	0.293033	2E-26				Affymetrix, Illumina [24246363] (imputed)	N
883	chr22	39073810	39073811	rs6001190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q13.1	NR	rs6001190-C	0.280184	2E-16		0.017867	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
883	chr22	39074736	39074737	rs6001193	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	22q13.1	TOMM22	rs6001193-G	0.35	7E-14		0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
883	chr22	39075433	39075434	rs9607566	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q13.1	NR	rs9607566-G	0.287072	4E-15		0.016001	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
883	chr22	39080637	39080638	rs5750669	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs5750669-A	0.29533	1E-14				Affymetrix, Illumina [24653286] (imputed)	N
883	chr22	39088763	39088764	rs6001199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs6001199-T	0.295237	4E-17				Affymetrix, Illumina [20825802] (imputed)	N
883	chr22	39094618	39094619	rs5750671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.1	JOSD1	rs5750671-C	0.305497	4E-9		0.014497726	[0.0097-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
883	chr22	39095697	39095698	rs926299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q13.1		rs926299-G	0.498063	4E-8		0.0197252	[0.013-0.027] unit decrease	Illumina [13476266] (imputed)	N
883	chr22	39096601	39096602	rs6519133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q13.1		rs6519133-C	NR	6E-37		0.0242	[0.02-0.028] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
883	chr22	39096601	39096602	rs6519133	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	22q13.1	JOSD1	rs6519133-T	0.605359	7E-40		0.00673096	[0.0057-0.0078] unit decrease	Affymetrix [13995440] (imputed)	N
883	chr22	39096601	39096602	rs6519133	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	22q13.1	NR	rs6519133-T	0.606359	2E-53		0.0321303	[0.028-0.036] unit increase	NR [NR]	N
883	chr22	39110123	39110124	rs5750673	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	22q13.1	GTPBP1	rs5750673-A	0.2776	2E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
883	chr22	39113133	39113134	rs4821816	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	22q13.1	GTPBP1	rs4821816-A	0.31	7E-12	(BMI-adjusted)	0.029	[0.021-0.037] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
883	chr22	39121251	39121252	rs6001209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	22q13.1	GTPBP1	rs6001209-G	NR	9E-12		0.0231699	[0.017-0.03] unit increase	Affymetrix [323123] (imputed)	N
883	chr22	39124911	39124912	rs2235229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.1	GTPBP1	rs2235229-T	0.617416	5E-9		0.01350237	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
883	chr22	39124911	39124912	rs2235229	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	22q13.1	GTPBP1, KDELR3, CBY1, DMC1, SUN2, DDX17, JOSD1, TOMM22	rs2235229-T	NR	4E-8		0.708	[0.45-0.97] unit increase	Affymetrix [14661600] (imputed)	N
883	chr22	39125073	39125074	rs4820346	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q13.1	GTPBP1	rs4820346-C	0.307077	2E-9		0.0129181	[0.0087-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
883	chr22	39129707	39129708	rs138699	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	22q13.1	GTPBP1	rs138699-A	0.246221748125043	8E-7		0.00307	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
883	chr22	39133802	39133803	rs138705	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	22q13.1	NR	rs138705-?		2E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
883	chr22	39138331	39138332	rs138708	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q13.1	NR	rs138708-G	NR	3E-14		1.162	[1.12-1.21]	Affymetrix, Illumina [29235255] (imputed)	N
883	chr22	39138331	39138332	rs138708	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	22q13.1	NR	rs138708-G	0.867	5E-9		1.175	[1.11-1.24]	Affymetrix, Illumina [10186136] (imputed)	N
883	chr22	39138331	39138332	rs138708	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	22q13.1	SUN2	rs138708-G	0.834	1E-15		1.198	NR	Illumina [7742602] (imputed)	N
883	chr22	39143336	39143336	rs371350765	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.1		rs371350765-?	NR	3E-25		0.0239705	[0.019-0.029] unit increase	Affymetrix [20259828] (imputed)	N
883	chr22	39143336	39143336	rs371350765	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q13.1	SUN2	rs371350765-C	0.728493	6E-6	(men)	0.0258105	[0.014-0.037] unit increase	NR [17166351] (imputed)	N
883	chr22	39143336	39143336	rs371350765	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	22q13.1	SUN2	rs371350765-C	0.727421	3E-9		0.0237869	[0.016-0.031] unit increase	NR [17166351] (imputed)	N
883	chr22	39150449	39150450	rs2076028	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	22q13.1	SUN2, CBY1, FAM227A, JOSD1, TOMM22, DDX17, GTPBP1	rs2076028-A	0.29	5E-16		0.2949	[0.22-0.37] unit decrease	Affymetrix [19941912] (imputed)	N
883	chr22	39176124	39176125	rs5757282	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.1	Intergenic	rs5757282-T	0.1598	3E-11		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
883	chr22	39178374	39178375	rs738144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs738144-A	0.8215	6E-12	(MTAG)	0.0161	[0.012-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr22	39178374	39178375	rs738144	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs738144-A	0.8217	1E-10	(MTAG)	0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
883	chr22	39178374	39178375	rs738144	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs738144-G	0.204838376727597	7E-6	(IGP75)	0.1878	[0.11-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
884	chr22	39194067	39194068	rs9619765	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	NR	rs9619765-T	0.0324	1E-6	(EA)	0.0914	[0.054-0.128] unit decrease	Illumina [~ 11800000] (imputed)	N
884	chr22	39240716	39240717	rs12628473	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.1	NPTXR	rs12628473-A	0.98703125	5E-21	(NPTXR, 8997_4_3)	1.0130515	[0.8-1.22] unit decrease	Illumina [> 1000000] (imputed)	N
884	chr22	39245555	39245556	rs74703065	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPTXR	5,363 Icelandic ancestry individuals	NA	22q13.1		rs74703065-A	0.01406	3E-32		0.928239	[0.77-1.08] unit increase	Illumina [7506463] (imputed)	N
884	chr22	39245617	39245618	rs13053505	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	22q13.1	NPTXR, CBX7	rs13053505-G	0.8	3E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
884	chr22	39245672	39245673	rs12168402	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	22q13.1	NR	rs12168402-T	0.3855	2E-6		0.014633119	[0.0086-0.0207] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
884	chr22	39254555	39254556	rs2075915	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.1	NR	rs2075915-A	0.7473540000000001	2E-11		0.00621915	[0.0043-0.0081] unit increase	Affymetrix [16582909] (imputed)	N
884	chr22	39254555	39254556	rs2075915	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.1	NR	rs2075915-A	0.7473540000000001	9E-12		0.00746985	[0.0053-0.0096] unit increase	Affymetrix [16582965] (imputed)	N
884	chr22	39271616	39271617	rs2013837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.1	CBX6	rs2013837-A	0.601358	2E-10		0.014763173	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr22	39271616	39271617	rs2013837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs2013837-A	0.617434	2E-15				Affymetrix, Illumina [24588908] (imputed)	N
884	chr22	39271616	39271617	rs2013837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q13.1	NR	rs2013837-A	0.598507	1E-16		0.015614	[0.012-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
884	chr22	39281773	39281774	rs5750691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.1		rs5750691-?	NR	1E-19				NR [~ 8900000] (imputed)	N
884	chr22	39286911	39286912	rs60944507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.1		rs60944507-G	0.598707	1E-9		0.014459584	[0.0098-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
884	chr22	39289013	39289014	rs143743568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.1		rs143743568-A	0.154	5E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
884	chr22	39289013	39289014	rs143743568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.1	Intergenic	rs143743568-A	0.154	7E-9	(MTAG)	0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
884	chr22	39300047	39300048	rs4603874	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.1	NR	rs4603874-?	NR	1E-6				Affymetrix [NR]	N
884	chr22	39306224	39306225	rs558874116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.1		rs558874116-?	NR	3E-10				NR [~ 8900000] (imputed)	N
885	chr22	39332622	39332623	rs1014971	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	22q13.1	CBX6, APOBEC3A	rs1014971-T	0.62	1E-11		1.13	[1.09-1.17]	Illumina [462190]	N
885	chr22	39332622	39332623	rs1014971	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	22q13.1	CBX6, APOBEC3A	rs1014971-?	0.62	8E-12		1.18	[1.10-1.18]	Illumina [589299]	N
885	chr22	39341662	39341663	rs5757394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.1		rs5757394-A	0.446948	7E-10		0.013707691	[0.0093-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
885	chr22	39350683	39350684	rs56297045	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	22q13.1		rs56297045-A	NR	2E-7		1.2294075	NR	Affymetrix [7846216] (imputed)	N
885	chr22	39358036	39358037	rs12628403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	22q13.1		rs12628403-C	NR	9E-14		0.1131	[0.083-0.143] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
885	chr22	39358036	39358037	rs12628403	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	22q13.1		rs12628403-C	NR	3E-17		1.09	[1.07-1.11]	Affymetrix, Illumina [NR] (imputed)	N
885	chr22	39358036	39358037	rs12628403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.1		rs12628403-?	NR	4E-9				NR [~ 8900000] (imputed)	N
885	chr22	39358036	39358037	rs12628403	27354352	Han MR	2016-06-27	Hum Mol Genet	Genome-wide association study in East Asians identifies two novel breast cancer susceptibility loci.	Breast cancer	7,619 East Asian ancestry cases, 6,286 East Asian ancestry controls	6,605 East Asian ancestry cases, 8,543 East Asian ancestry controls	22q13.1		rs12628403-C	0.27	4E-6		1.17	[1.09-1.25]	Affymetrix, Illumina [668499] (imputed)	N
885	chr22	39362449	39362450	rs560826864	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.1	APOBEC3A	rs560826864-T	0.00153599999999998	1E-12		0.21887286	[0.16-0.28] unit increase	Affymetrix [93095623] (imputed)	N
885	chr22	39362449	39362450	rs560826864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.1	NR	rs560826864-T	0.001521	9E-14		0.213805	[0.16-0.27] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
885	chr22	39399940	39399941	rs6001366	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	22q13.1	APOBEC3B, APOBEC3C	rs6001366-C	0.921	3E-6	(Hispanic/Latino+AfricanAmerican)	2.13	[1.54-2.86]	Affymetrix [~ 8700000] (imputed)	N
885	chr22	39404248	39404249	rs5995653	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	22q13.1	APOBEC3B, APOBEC3C	rs5995653-G	0.715	5E-6	(Hispanic/Latino+AfricanAmerican)	1.52	[1.27-1.79]	Affymetrix [~ 8700000] (imputed)	N
885	chr22	39404248	39404249	rs5995653	30697902	Hernandez-Pacheco N	2019-01-29	Clin Exp Allergy	Genome-wide association study of inhaled corticosteroid response in admixed children with asthma.	Asthma exacerbations in inhaled corticosteroid treatment	854 Hispanic/Latino cases, 493 African American cases	1,697 European ancestry cases	22q13.1	APOBEC3B, APOBEC3C	rs5995653-G	0.715	3E-7		1.43	[1.23-1.64]	Affymetrix [~ 8700000] (imputed)	N
885	chr22	39411864	39411865	rs2012735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q13.1		rs2012735-T	NR	5E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
886	chr22	39492762	39492763	rs113023	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q13.1		rs113023-C	0.593	7E-9				Affymetrix [10369434] (imputed)	N
886	chr22	39493355	39493356	rs60093835	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q13.1		rs60093835-C	0.881	2E-12				Affymetrix [10369434] (imputed)	N
886	chr22	39493355	39493356	rs60093835	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs60093835-T	0.122616	4E-22				Affymetrix, Illumina [23467995] (imputed)	N
886	chr22	39496743	39496744	rs11914001	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.1	APOBEC3H	rs11914001-A	0.125556	2E-18		0.029349042	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39496743	39496744	rs11914001	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.1	NR	rs11914001-A	0.125833	5E-24		0.028602	[0.023-0.034] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
886	chr22	39496901	39496902	rs55887645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q13.1		rs55887645-T	NR	1E-12		0.0249	[0.018-0.032] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
886	chr22	39501195	39501196	rs139320	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	22q13.1	intergenic	rs139320-?	NR	8E-6		0.174	[0.1-0.248] unit increase	Illumina [at least 13000000] (imputed)	N
886	chr22	39510860	39510861	rs1807586	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q13.1	NR	rs1807586-A	0.095929	6E-9		0.02256802	[0.015-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39510994	39510995	rs738469	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.1	APOBEC3G	rs738469-A	0.903125	4E-9	(APOBEC3G, 13930_3_3)	0.24518389	[0.16-0.33] unit increase	Illumina [> 1000000] (imputed)	N
886	chr22	39519153	39519154	rs80051801	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.1	NR	rs80051801-G	0.01916	1E-9	(EPHX1)	4.078	NR unit increase	Illumina [1671387] (imputed)	N
886	chr22	39519195	39519196	rs139371	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		22q13.1	NR	rs139371-A	0.46	2E-9	(HD vs. controls)	1.37	[1.24-1.52]	Illumina [414804]	N
886	chr22	39519195	39519196	rs139371	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		22q13.1	NR	rs139371-G	0.46	9E-6	(non t11;14 and t4;14 IgH translocations vs. controls)	1.5	[1.26-1.80]	Illumina [414804] (imputed)	N
886	chr22	39522487	39522488	rs139374	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q13.1	CBX7	rs139374-T	0.388435	1E-10		0.014811695	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39526173	39526174	rs139380	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.1		rs139380-?	NR	3E-12				NR [~ 8900000] (imputed)	N
886	chr22	39527582	39527583	rs79502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs79502-T	0.602902	1E-15				Affymetrix, Illumina [24558453] (imputed)	N
886	chr22	39527908	39527909	rs139383	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q13.1		rs139383-A	NR	5E-25		0.0213	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
886	chr22	39527934	39527935	rs139384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.1	CBX7	rs139384-T	0.596845	7E-12		0.015492373	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39527934	39527935	rs139384	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.1	CBX7	rs139384-T	0.59685	4E-12		0.015665513	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39528439	39528440	rs79503	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q13.1		rs79503-A	0.55	4E-12				Affymetrix [10369434] (imputed)	N
886	chr22	39532419	39532420	rs713909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q13.1	CBX7	rs713909-C	0.438158	1E-37		0.028709028	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39532419	39532420	rs713909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs713909-C	0.3895	1E-27				Affymetrix, Illumina [24649327] (imputed)	N
886	chr22	39532419	39532420	rs713909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q13.1	NR	rs713909-C	0.431992	3E-26		0.020157	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
886	chr22	39532419	39532420	rs713909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs713909-C	0.403417	2E-47				Affymetrix, Illumina [23472807] (imputed)	N
886	chr22	39532419	39532420	rs713909	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q13.1	NR	rs713909-C	0.432792	5E-49		0.028643	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
886	chr22	39532419	39532420	rs713909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	22q13.1	CBX7	rs713909-C	0.4386	1E-9		0.0220845	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
886	chr22	39532419	39532420	rs713909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	22q13.1	CBX7	rs713909-C	0.4388	2E-16		0.02985506	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
886	chr22	39538432	39538433	rs139395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q13.1		rs139395-C	NR	2E-10		0.011	[0.0077-0.0143] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
886	chr22	39538432	39538433	rs139395	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q13.1		rs139395-C	NR	3E-10		0.0103	[0.0072-0.0134] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
886	chr22	39538432	39538433	rs139395	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.1	NR	rs139395-C	0.583549	1E-15		0.015161	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
886	chr22	39539299	39539299	rs35587819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q13.1	CBX7	rs35587819-TA	0.435028	1E-14		0.017870197	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39542291	39542292	rs877529	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	22q13.1	CBX7	rs877529-A	0.44	1E-9		1.15	[NR]	Illumina [33000000] (imputed)	N
886	chr22	39542291	39542292	rs877529	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	22q13.1	CBX7	rs877529-A	0.51	8E-16		1.228	[1.17-1.29]	Illumina [414804]	N
886	chr22	39546144	39546145	rs139402	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	22q13.1	NR	rs139402-C		5E-26		1.23	[1.19-1.28]	Illumina [at least 7182761] (imputed)	N
886	chr22	39547890	39547891	rs1005300	28025584	da Silva Filho MI	2016-12-27	Leukemia	Genome-wide association study of immunoglobulin light chain amyloidosis in three patient cohorts: comparison with myeloma.	Immunoglobulin light chain (AL) amyloidosis	1,229 cases, 7,526 controls	NA	22q13.1	CBX7	rs1005300-G	0.59	8E-8		1.29	[1.17-1.41]	Affymetrix, Illumina [NR] (imputed)	N
886	chr22	39552074	39552075	rs139407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q13.1		rs139407-?	NR	1E-27				NR [~ 8900000] (imputed)	N
886	chr22	39553771	39553772	rs139413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q13.1		rs139413-G	NR	2E-28		0.0243	[0.02-0.029] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
886	chr22	39553771	39553772	rs139413	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	22q13.1		rs139413-A	0.561	8E-20				Affymetrix [10369434] (imputed)	N
886	chr22	39553818	39553819	rs139414	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	22q13.1		rs139414-G	0.55	2E-11				Affymetrix [10369434] (imputed)	N
886	chr22	39557339	39557340	rs139419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q13.1		rs139419-G	NR	7E-13		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
886	chr22	39557413	39557414	rs139420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.1		rs139420-?	NR	1E-13				NR [~ 8900000] (imputed)	N
886	chr22	39559297	39559298	rs139424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs139424-C	0.603971	4E-14				Affymetrix, Illumina [24332387] (imputed)	N
886	chr22	39561369	39561370	rs35795877	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.1		rs35795877-G	0.596927	1E-11		0.015345386	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
886	chr22	39563912	39563912	rs34101942	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	22q13.1	CBX7	rs34101942-?	NR	9E-6		0.15	[NR] unit increase	Illumina [12100000] (imputed)	N
886	chr22	39563912	39563912	rs34101942	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	22q13.1	CBX7	rs34101942-?	NR	3E-7		0.18	[NR] unit increase	Illumina [12100000] (imputed)	N
886	chr22	39566242	39566243	rs73884850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.1		rs73884850-A	0.078942	2E-9		0.025127862	[0.017-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
887	chr22	39615120	39615121	rs75279419	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q13.1	NR	rs75279419-G	0.127869	1E-11		0.02026	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
887	chr22	39617701	39617702	rs6001508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	22q13.1		rs6001508-?	NR	6E-8				NR [~ 8900000] (imputed)	N
887	chr22	39634922	39634923	rs5750782	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	22q13.1	NR	rs5750782-?	NR	4E-6		0.0850027	[0.049-0.121] unit increase	NR [13958389] (imputed)	N
887	chr22	39647167	39647168	rs77516118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q13.1		rs77516118-?	NR	4E-16				NR [~ 8900000] (imputed)	N
887	chr22	39659772	39659773	rs2413583	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	22q13.1	SYNGR1, RPL3	rs2413583-?		3E-10				Illumina [9578670] (imputed)	N
887	chr22	39659772	39659773	rs2413583	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	22q13.1	SYNGR1, RPL3	rs2413583-?		5E-24				Illumina [9725440] (imputed)	N
887	chr22	39659772	39659773	rs2413583	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	22q13.1	SYNGR1, RPL3	rs2413583-?		8E-21				Illumina [9560910] (imputed)	N
887	chr22	39659772	39659773	rs2413583	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.1	NR	rs2413583-G	0.83	7E-15	(EA)	1.1438878		Affymetrix, Illumina [~ 9000000] (imputed)	N
887	chr22	39659772	39659773	rs2413583	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.1	NR	rs2413583-G	0.83	8E-34	(EA)	1.2341797	[1.2-1.27]	Affymetrix, Illumina [~ 9000000] (imputed)	N
887	chr22	39659772	39659773	rs2413583	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	22q13.1	ATF4, TAB1, APOBEC3G	rs2413583-C	0.833	4E-33		1.209	[1.163-1.257]	Affymetrix, Illumina [1230000] (imputed)	N
887	chr22	39659772	39659773	rs2413583	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	22q13.1	MAP3K7IP1	rs2413583-C	0.83	1E-26		1.23	[1.17-1.29]	Affymetrix, Illumina [953241] (imputed)	N
887	chr22	39660828	39660829	rs2143178	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	22q13.1	AL031590.1	rs2143178-?	NR	2E-33	(subset analysis)			Illumina [130052]	N
887	chr22	39660828	39660829	rs2143178	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.1	NR	rs2143178-?	NR	5E-38	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
887	chr22	39662549	39662550	rs5757584	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	22q13.1	AL031590.1	rs5757584-?	NR	4E-9	(subset analysis)			Illumina [130052]	N
887	chr22	39663270	39663271	rs10713175	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q13.1		rs10713175-A	NR	2E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
887	chr22	39665200	39665201	rs1569496	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.1		rs1569496-G	0.441368	9E-14		0.016919745	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
887	chr22	39670850	39670851	rs968451	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	22q13.1	MAP3K7IP1	rs968451-T	0.19	1E-9		1.27	[1.18-1.38]	Illumina [507467]	N
887	chr22	39673012	39673013	rs5757602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q13.1		rs5757602-?	NR	4E-12				NR [~ 8900000] (imputed)	N
887	chr22	39678311	39678312	rs1985378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	22q13.1		rs1985378-?	NR	3E-8				NR [~ 8900000] (imputed)	N
887	chr22	39687483	39687484	rs54211	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	22q13.1	intergenic	rs54211-?	0.13	8E-7	(Recessive)	1.57	[1.32-1.88]	Affymetrix [319222]	N
887	chr22	39694224	39694225	rs137603	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	22q13.1	SYNGR1, RPL3	rs137603-?	0.85	3E-8		1.37	[1.23-1.54]	Illumina [776516]	N
888	chr22	39717705	39717706	rs137631	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	22q13.1	RPL3	rs137631-T	0.12	9E-9		0.0233	[0.015-0.031] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
888	chr22	39717705	39717706	rs137631	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	22q13.1	RPL3	rs137631-T	0.12	2E-7	(EA)	0.0216	[0.013-0.03] unit increase	Affymetrix, Illumina [13887196] (imputed)	N
888	chr22	39721744	39721745	rs12627970	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.1	NR	rs12627970-G	0.2081	2E-18	(EA)	1.1155151	[1.09-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
888	chr22	39733241	39733242	rs137657	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	Intergenic	rs137657-?		8E-6		1.72	[1.35-2.17]	Illumina [7645193] (imputed)	N
888	chr22	39735086	39735087	rs151314883	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	22q13.1		rs151314883-?	NR	4E-11		0.055	NR unit decrease	NR [5890016] (imputed)	N
888	chr22	39737093	39737094	rs137672	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	22q13.1	SYNGR1	rs137672-C	0.0601	1E-7		1.7452006	[1.42-2.15]	Illumina [7521072] (imputed)	N
888	chr22	39739186	39739187	rs9611155	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	22q13.1	SYNGR1	rs9611155-T	0.761	8E-9		1.137	[1.09-1.18]	Illumina [11270530] (imputed)	N
888	chr22	39739186	39739187	rs9611155	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	22q13.1	SYNGR1	rs9611155-?	NR	1E-8		1.0489877	NR	Affymetrix [9154080] (imputed)	N
888	chr22	39739637	39739638	rs137686	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs137686-C	0.24173856626506	1E-11	(IGP39)	0.2524	[0.18-0.33] unit increase	Illumina [~ 2500000] (imputed)	N
888	chr22	39740077	39740078	rs137687	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	22q13.1		rs137687-A	NR	2E-23		0.217763	[0.17-0.26] unit decrease	NR [5054572] (imputed)	N
888	chr22	39747049	39747050	rs2267407	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	22q13.1	SYNGR1, PDGFB, RPL3	rs2267407-A	0.23	1E-13		1.29	[1.21-1.38]	Illumina [237619] (imputed)	N
888	chr22	39747670	39747671	rs909685	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	22q13.1	SYNGR1	rs909685-A	NR	4E-14		0.1489	[0.074-0.224] unit increase	Illumina [8380626] (imputed)	N
888	chr22	39747670	39747671	rs909685	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	22q13.1	SYNGR1	rs909685-A	0.85	4E-6	(East Asian)	0.20136	[0.12-0.29] unit increase	Illumina [8380626] (imputed)	N
888	chr22	39747670	39747671	rs909685	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	22q13.1	SYNGR1	rs909685-A	0.3	3E-10	(EA)	0.10523	[0.072-0.138] unit increase	Illumina [8380626] (imputed)	N
888	chr22	39747670	39747671	rs909685	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	22q13.1	SYNGR1	rs909685-T	0.31	3E-9		1.1111112	[1.08-1.15]	Illumina [133816] (imputed)	N
888	chr22	39747670	39747671	rs909685	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	SYNGR1	rs909685-A	0.85	2E-7	(East Asian)	1.23	[1.14-1.33]	Affymetrix, Illumina [up to 9739303] (imputed)	N
888	chr22	39747670	39747671	rs909685	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	SYNGR1	rs909685-A	0.45	1E-16		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 9739303] (imputed)	N
888	chr22	39747670	39747671	rs909685	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	22q13.1	SYNGR1	rs909685-A	0.3	6E-12	(EA)	1.11	[1.08-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
888	chr22	39747779	39747780	rs2069235	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	22q13.1		rs2069235-A	NR	5E-8		0.0522	[0.033-0.071] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
888	chr22	39747779	39747780	rs2069235	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	22q13.1		rs2069235-A	NR	2E-20		1.14	[1.11-1.17]	NR [13810676] (imputed)	N
888	chr22	39747779	39747780	rs2069235	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	22q13.1	SYNGR1, PDGFB	rs2069235-A	0.31999999999999995	2E-11		1.2658228	NR	Illumina [1143634] (imputed)	N
888	chr22	39748853	39748854	rs137699	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs137699-G	0.690710359535507	8E-6	(IGP18)	0.1564	[0.088-0.225] unit decrease	Illumina [~ 2500000] (imputed)	N
888	chr22	39749980	39749981	rs5757628	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Rheumatoid arthritis	8,255 European ancestry cases, 409,001 European ancestry controls, 5,348 East Asian ancestry cases, 173,268 East Asian ancestry controls	NA	22q13.1		rs5757628-A	NR	8E-10		0.0966	[0.066-0.127] unit increase	Affymetrix, Illumina [25835038] (imputed)	N
888	chr22	39751250	39751251	rs715505	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	22q13.1	NR	rs715505-C		1E-11		1.41	[1.28-1.60]	Illumina [109812]	N
888	chr22	39754366	39754367	rs186680008	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Cholesteryl ester levels	2,045 European ancestry individuals	NA	22q13.1	SYNGR1	rs186680008-C	NR	3E-8	(CE(20:3;0))	0.8101	[0.52-1.1] unit decrease	Illumina [~ 9300000] (imputed)	N
888	chr22	39756649	39756650	rs2049985	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q13.1		rs2049985-C	NR	2E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
888	chr22	39756649	39756650	rs2049985	32723749	Kwon YC	2020-07-28	Ann Rheum Dis	Genome-wide association study in a Korean population identifies six novel susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	4,068 Korean ancestry cases, 36,487 Korean ancestry controls	NA	22q13.1	SYNGR1	rs2049985-?		4E-9		0.8	[0.74-0.86]	Illumina [NR] (imputed)	N
888	chr22	39770596	39770597	rs4821888	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs4821888-A	NR	4E-8		5.491	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
888	chr22	39781584	39781585	rs1007337	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD20 on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.1		rs1007337-T	0.60241	3E-8		0.1389	[0.09-0.188] unit decrease	Illumina [18238311] (imputed)	N
888	chr22	39790190	39790191	rs2413590	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	22q13.1	PFGFB, SYNGR1, TAB1	rs2413590-?	NR	4E-12	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
888	chr22	39790190	39790191	rs2413590	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	22q13.1	PFGFB, SYNGR1, TAB1	rs2413590-?	NR	2E-12				Affymetrix, Illumina [10537485] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.1		rs5750823-?	NR	9E-18				NR [~ 8900000] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q13.1	NR	rs5750823-?	NR	7E-8		0.13627	[0.087-0.186] unit increase	Affymetrix [7794483] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	22q13.1	NR	rs5750823-?	NR	6E-9	(female)	0.16096	[0.11-0.22] unit increase	Affymetrix [7794483] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	22q13.1	RPL3, TAB1, SYNGR1, PDGB	rs5750823-T	0.72	6E-14		0.02	[0.015-0.025] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	22q13.1	PFGFB, SYNGR1, TAB1	rs5750823-T	0.73	3E-11	(EA)	0.0188	[0.013-0.024] unit decrease	Affymetrix, Illumina [10537485] (imputed)	N
888	chr22	39829972	39829973	rs5750823	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	Factor VIII levels	25,897 European ancestry individuals, 4,500 African American individuals, 773 Asian ancestry individuals, 1,440 Hispanic individuals	NA	22q13.1	RPL3, TAB1, SYNGR1, PDGB	rs5750823-T	0.7	2E-6		0.013	NR unit decrease	Affymetrix, Illumina [13887196] (imputed)	N
888	chr22	39830585	39830586	rs17001110	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.1	TAB1	rs17001110-A	0.0076	6E-6		0.2135	[0.12-0.31] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
888	chr22	39830585	39830586	rs17001110	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.1	TAB1	rs17001110-A	0.0076	6E-6		0.2135	[0.12-0.31] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
888	chr22	39832112	39832113	rs5750826	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	22q13.1	TAB1	rs5750826-A	0.41	4E-9		5.89	z-score increase	Affymetrix [4311822] (imputed)	N
888	chr22	39834101	39834102	rs73167342	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.1	NR	rs73167342-C	0.297217	3E-12		0.04789623	[0.034-0.061] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
888	chr22	39834101	39834102	rs73167342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.1	Intergenic	rs73167342-C	0.261	1E-16	(MTAG)	0.0217	[0.017-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
888	chr22	39834101	39834102	rs73167342	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.1	Intergenic	rs73167342-C	0.261	2E-12		0.0229	[0.016-0.029] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
888	chr22	39834101	39834102	rs73167342	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs73167342-G	0.6853	3E-38	(IgG4_G0FN/IgG4_G0F)	0.5559	[0.47-0.64] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39834101	39834102	rs73167342	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs73167342-G	0.6846	5E-31	(IgG4 Bisecting_GlcNAc)	0.5006	[0.42-0.59] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q13.1	NR	rs5750828-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
888	chr22	39835082	39835083	rs5750828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q13.1		rs5750828-?	NR	3E-8				NR [~ 8900000] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.6973	3E-18	(IgG1 Bisecting_GlcNAc)	0.3755	[0.29-0.46] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-8	(IgG4_G0F)	0.2285	[0.15-0.31] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-26	(IgG1_G0FN/IgG1_G0F)	0.4527	[0.37-0.54] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-20	(IgG1 FBn/Fn)	0.3937	[0.31-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-20	(IgG1 FBn/Fn total)	0.3934	[0.31-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-19	(IgG1 Bn total)	0.384	[0.3-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	7E-11	(IgG4_G0Fn)	0.2786	[0.19-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	6E-16	(IgG1 FG0n/G0n)	0.3474	[0.26-0.43] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	6E-15	(IgG1_G1FN/IgG1_G1F)	0.3351	[0.25-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	6E-12	(IgG4_G2FN)	0.2906	[0.21-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	4E-27	(IgG4_G1FN/IgG4_G1F)	0.4678	[0.38-0.55] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	4E-14	(IgG1 FBG1n/G1n)	0.3266	[0.24-0.41] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	4E-11	(IgG2_G2FN(10)/(IgG1_G2FN(10) + IgG2_G2FN(10) +IgG4_G2FN(10))	0.2751	[0.19-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	4E-10	(IgG4_G2FNn)	0.2636	[0.18-0.35] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	3E-8	(IgG2_G0FN/IgG2_G0F)	0.2429	[0.16-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	3E-19	(IgG4_G2FN/IgG4_G2F)	0.3804	[0.3-0.46] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	3E-18	(IgG1 FBn)	0.3784	[0.29-0.46] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	3E-15	(IgG1_G1FN)	0.3418	[0.26-0.43] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	2E-24	(IgG1 FBG0n/G0n)	0.4425	[0.36-0.53] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	2E-24	(IgG1 BG0n total/G0n)	0.4406	[0.36-0.53] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	2E-14	(IgG1 BG1n total/G1n)	0.3307	[0.25-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	2E-11	(IgG1 FBG2n/G2n)	0.293	[0.21-0.38] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	1E-18	(IgG1 Fn/Bn total)	0.3787	[0.29-0.46] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.697	1E-14	(IgG1_G1FNn)	0.3356	[0.25-0.42] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.6968	4E-8	(IgG2 BG0n total/G0n)	0.2415	[0.16-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.6968	3E-8	(IgG2 FBG0n/G0n)	0.2439	[0.16-0.33] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835082	39835083	rs5750828	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750828-C	0.6964	6E-12	(IgG2_G2FN(10)/IgG4_G2FN)	0.2832	[0.2-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39835586	39835587	rs4821897	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs4821897-G	0.707166482866044	4E-18	(IGP67)	0.2976	[0.23-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
888	chr22	39835586	39835587	rs4821897	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs4821897-G	0.707128727839644	3E-12	(IGP63)	0.2388	[0.17-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
888	chr22	39836972	39836972	rs10644269	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs10644269-CTT	0.7136	3E-30	(IgG4_G1FN)	0.4895	[0.41-0.57] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39836972	39836972	rs10644269	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs10644269-CTT	0.7136	1E-27	(IgG4_G1FNn)	0.4634	[0.38-0.55] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39837919	39837920	rs5757673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs5757673-T	0.2759	4E-18	(MTAG)	0.0174	[0.013-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
888	chr22	39837919	39837920	rs5757673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.1	Intergenic	rs5757673-T	0.2759	4E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
888	chr22	39837919	39837920	rs5757673	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs5757673-T	0.2755	4E-14	(MTAG)	0.0139	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
888	chr22	39837919	39837920	rs5757673	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	Intergenic	rs5757673-T	0.878	1E-6	(AA)	0.126	NR unit increase	Illumina [NR] (imputed)	N
888	chr22	39838017	39838018	rs5750829	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD45 on B cell	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.1		rs5750829-G	0.59674	4E-9		0.1537	[0.1-0.2] unit decrease	Illumina [18030716] (imputed)	N
888	chr22	39838017	39838018	rs5750829	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750829-G	0.6816	4E-21	(IgG2_G1FN(10)/(IgG1_G1FN(10) + IgG2_G1FN(10) +IgG4_G1FN(10))	0.4048	[0.32-0.49] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39838017	39838018	rs5750829	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs5750829-G	0.681	5E-7	(IgG2_G0F(10)/IgG4_G0F)	0.2101	[0.13-0.29] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39838351	39838352	rs4821898	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs4821898-T	0.7209	1E-7	(IgG4_G2FN(10)/(IgG1_G2FN(10) + IgG2_G2FN(10) +IgG4_G2FN(10))	0.2197	[0.14-0.3] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39838891	39838892	rs5757675	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	22q13.1	MGAT3, SYNGR1, TAB1	rs5757675-G	NR	3E-9		1.035		NR [14661600] (imputed)	N
888	chr22	39840129	39840130	rs9611177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q13.1	NR	rs9611177-T	0.443288	8E-11		0.014712655	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
888	chr22	39840129	39840130	rs9611177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q13.1		rs9611177-?	NR	2E-10				NR [~ 8900000] (imputed)	N
888	chr22	39840129	39840130	rs9611177	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.1	NR	rs9611177-C	NR	6E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
888	chr22	39840827	39840828	rs5750830	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	22q13.1	MGAT3	rs5750830-A	0.74	8E-69		0.344	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
888	chr22	39840827	39840828	rs5750830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.1	Intergenic	rs5750830-A	0.7407	3E-8	(MTAG)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
888	chr22	39840827	39840828	rs5750830	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs5750830-A	NR	2E-13		7.321	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
888	chr22	39840827	39840828	rs5750830	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	TAB1	rs5750830-A	NR	6E-10		0.021063557	[0.014-0.028] unit increase	Affymetrix [NR]	N
888	chr22	39841699	39841700	rs5757676	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs5757676-C	0.775682419642857	1E-7	(IGP36)	0.1968	[0.12-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
888	chr22	39843536	39843537	rs9306335	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs9306335-C	0.7218	3E-19	(IgG4_G1FN(10)/(IgG1_G1FN(10) + IgG2_G1FN(10) +IgG4_G1FN(10))	0.3854	[0.3-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39843536	39843537	rs9306335	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs9306335-C	0.721	1E-27	(IgG2_G1FN(10)/IgG4_G1FN)	0.4683	[0.38-0.55] unit increase	Affymetrix [up to 18185628] (imputed)	N
888	chr22	39843536	39843537	rs9306335	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs9306335-C	0.7209	1E-8	(IgG1_G1FN(10)/IgG4_G1FN)	0.2451	[0.16-0.33] unit increase	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	8E-19	(IgG4_G0FN)	0.3874	[0.3-0.47] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	6E-21	(IgG4_G0FNn)	0.4111	[0.33-0.5] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	5E-12	(IgG1_G2FN/IgG1_G2F)	0.3059	[0.22-0.39] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	4E-9	(IgG1_G0FN)	0.254	[0.17-0.34] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	3E-12	(IgG1 BG2n total/G2n)	0.3108	[0.22-0.4] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	3E-10	(IgG1_G0FNn)	0.2729	[0.19-0.36] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39845897	39845898	rs1005522	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs1005522-A	0.7434	1E-10	(IgG2_G0FN(10)/(IgG1_G0FN(10) + IgG2_G0FN(10) +IgG4_G0FN(10))	0.2747	[0.19-0.36] unit increase	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39852920	39852921	rs6001600	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs6001600-T	0.7242	7E-7	(IgG2_G0FNn)	0.2175	[0.13-0.3] unit decrease	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39859168	39859169	rs909674	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.1	MGAT3	rs909674-A	NR	2E-8		5.624	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	1E-13				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	1E-6				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	2E-14				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	1E-20				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG disialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	4E-14				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	3E-13				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	4E-10				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	22q13.1	SYNGR1, TAB1, MGAT3	rs909674-A	0.78	3E-19				Illumina [NR]	N
889	chr22	39859168	39859169	rs909674	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	MGAT3	rs909674-C	0.926	2E-6	(AA)	0.143	NR unit increase	Illumina [NR] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs909674-C	0.299013119715176	4E-16	(IGP70)	0.2754	[0.21-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299323467231387	9E-6	(IGP69)	0.151	[0.084-0.218] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299146468388246	2E-10	(IGP62)	0.2148	[0.15-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299146275601069	2E-15	(IGP72)	0.2695	[0.2-0.34] unit decrease	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299100489968792	2E-6	(IGP30)	0.1606	[0.095-0.227] unit decrease	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299056983073497	3E-9	(IGP9)	0.2011	[0.13-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299056983073497	3E-9	(IGP49)	0.2003	[0.13-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299013119715176	6E-16	(IGP71)	0.2737	[0.21-0.34] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299013119715176	3E-8	(IGP64)	0.1872	[0.12-0.25] unit decrease	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299013119715176	3E-13	(IGP45)	0.2468	[0.18-0.31] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299013119715176	1E-24	(IGP40)	0.3447	[0.28-0.41] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.299013119715176	1E-16	(IGP66)	0.281	[0.21-0.35] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.298923976402493	6E-10	(IGP68)	0.2094	[0.14-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.298923567230632	5E-10	(IGP22)	0.2099	[0.14-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.298923567230632	1E-10	(IGP5)	0.2178	[0.15-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.298878222915738	2E-10	(IGP34)	0.2136	[0.15-0.28] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.298476014725569	9E-24	(IGP39)	0.3388	[0.27-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.29096	9E-6	(IgG1G2N)	0.0651	[0.036-0.094] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.29096	3E-8	(IgG1G0N)	0.083	[0.054-0.112] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39859168	39859169	rs909674	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	22q13.1	MGAT3, TAB1, CACNA1I, SYNGR1	rs909674-C	0.29096	2E-10	(IgG1G1N)	0.0721	[0.050-0.094] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39860129	39860130	rs2008174	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.1	MGAT3	rs2008174-T	0.7408	4E-14		0.0168	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
889	chr22	39860129	39860130	rs2008174	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	MGAT3	rs2008174-C	0.925	3E-6	(AA)	0.142	NR unit increase	Illumina [NR] (imputed)	N
889	chr22	39860588	39860589	rs3959642	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	MGAT3	rs3959642-A	0.912	1E-7	(AA)	0.149	NR unit increase	Illumina [NR] (imputed)	N
889	chr22	39860867	39860868	rs7286917	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	22q13.1	NR	rs7286917-G	0.7161	6E-14	(IgG1 FG0n/G0n)	0.3434	[0.25-0.43] unit increase	Affymetrix [up to 18185628] (imputed)	N
889	chr22	39860867	39860868	rs7286917	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.1	MGAT3	rs7286917-A	0.898	1E-6	(AA)	0.133	NR unit increase	Illumina [NR] (imputed)	N
889	chr22	39874313	39874314	rs2899319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q13.1	MGAT3	rs2899319-C	0.617498	1E-11		0.01574192	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39874313	39874314	rs2899319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.1	MGAT3	rs2899319-C	0.617488	8E-12		0.0158838	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39874313	39874314	rs2899319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q13.1	MGAT3	rs2899319-C	0.617445	2E-14		0.01765451	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39874313	39874314	rs2899319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.1	MGAT3	rs2899319-C	0.617424	3E-14		0.017592318	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39874313	39874314	rs2899319	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs2899319-A	NR	1E-8		5.662	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
889	chr22	39897162	39897163	rs7287617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q13.1		rs7287617-A	NR	1E-19		0.0223	[0.018-0.027] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
889	chr22	39897162	39897163	rs7287617	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q13.1	MIEF1	rs7287617-G	0.352591	2E-28		0.00267079	[0.0022-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
889	chr22	39903476	39903477	rs146514405	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on CD20- CD38- B cell	3,592 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.1		rs146514405-T	0.02147	1E-8		0.4829	[0.32-0.65] unit decrease	Illumina [18217315] (imputed)	N
889	chr22	39913281	39913282	rs1048310	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.1	MIEF1	rs1048310-G	0.304205	3E-10		0.015018971	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39913281	39913282	rs1048310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.1		rs1048310-?	NR	7E-13				NR [~ 8900000] (imputed)	N
889	chr22	39916626	39916626	rs35920692	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.1	ATF4	rs35920692-TC	0.304745	8E-10		0.0141092	[0.0097-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
889	chr22	39917514	39917515	rs4894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q13.1		rs4894-C	NR	7E-9		0.0137	[0.009-0.0184] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
889	chr22	39917514	39917515	rs4894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs4894-C	0.267773	2E-10				Affymetrix, Illumina [20825802] (imputed)	N
889	chr22	39919385	39919386	rs373147349	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.1	NR	rs373147349-A	0.01742	2E-8	(FERMT2)	0.07488	NR unit increase	Illumina [1671387] (imputed)	N
889	chr22	39919998	39919998	rs555222135	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.1	NR	rs555222135-I	0.29927	6E-11		0.014217	[0.01-0.0185] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
889	chr22	39926928	39926929	rs1028321	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	22q13.1	NR	rs1028321-A	0.3052	7E-9		0.0111	[0.0073-0.0149] unit decrease	NR [8968716] (imputed)	N
889	chr22	39930196	39930197	rs2413595	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	RPS19BP1	rs2413595-T	NR	5E-8		0.01684092	[0.011-0.023] unit increase	Affymetrix [NR]	N
889	chr22	39937222	39937223	rs5750847	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs5750847-C	0.276822	1E-10				Affymetrix, Illumina [24246363] (imputed)	N
889	chr22	39939104	39939105	rs6001619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.1	NR	rs6001619-G	0.310267	4E-11		0.013716	[0.0096-0.0178] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
889	chr22	39942233	39942234	rs5757717	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	22q13.1	RPS19BP1, ATF4	rs5757717-?		9E-11				NR [6786993] (imputed)	N
889	chr22	39942233	39942234	rs5757717	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	RPS19BP1	rs5757717-T	NR	5E-8		0.016741602	[0.011-0.023] unit increase	Affymetrix [NR]	N
889	chr22	39942233	39942234	rs5757717	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.1	NR	rs5757717-C	NR	6E-10		1.0752687	[NR]	Illumina [7158791] (imputed)	N
889	chr22	39942512	39942513	rs56254143	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.1	NR	rs56254143-G	0.02439	1E-9	(ACSM2A)	0.2304	NR unit increase	Illumina [1671387] (imputed)	N
889	chr22	39955872	39955873	rs9611198	22883433	Irish Schizophrenia Genomics Consortium and the Wellcome Trust Case Control Consortium 2	2012-08-07	Biol Psychiatry	Genome-wide association study implicates HLA-C*01:02 as a risk factor at the major histocompatibility complex locus in schizophrenia.	Schizophrenia	1,606 European ancestry cases, 1,794 European ancestry controls	13,195 European ancestry cases, 31,021 European ancestry controls	22q13.1	CACNA1I	rs9611198-C	0.458	8E-6		1.22	[1.11-1.34]	Affymetrix [6212339]	N
889	chr22	39959056	39959057	rs9623017	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	22q13.1	NR	rs9623017-G		7E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
889	chr22	39966546	39966547	rs7288455	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	22q13.1	NR	rs7288455-A	0.3698	8E-9		0.0661519	[0.044-0.089] unit decrease	NR [NR]	N
889	chr22	39967429	39967430	rs5757730	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	22q13.1	NR	rs5757730-?	NR	8E-11		1.0732608	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
889	chr22	39967429	39967430	rs5757730	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.1	CACNA1I	rs5757730-G	NR	2E-10		1.0729614	[1.05-1.09]	Illumina [6627481] (imputed)	N
889	chr22	39967429	39967430	rs5757730	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.1		rs5757730-A	0.4875	2E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
889	chr22	39967429	39967430	rs5757730	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.1	NR	rs5757730-?	NR	1E-7		5.336	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
889	chr22	39967429	39967430	rs5757730	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	22q13.1	LOC100506472, MGAT3, TAB1, CACNA1I, RPS19BP1	rs5757730-?	NR	2E-12		1.0741138	[1.05-1.09]	Illumina [8000000] (imputed)	N
889	chr22	39967429	39967430	rs5757730	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	22q13.1	CACNA1I	rs5757730-G	NR	2E-10		1.0718113	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
889	chr22	39972161	39972162	rs3788556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q13.1		rs3788556-?	NR	8E-11				NR [~ 8900000] (imputed)	N
889	chr22	39972161	39972162	rs3788556	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	CACNA1I	rs3788556-T	NR	2E-9		0.017985191	[0.012-0.024] unit increase	Affymetrix [NR]	N
889	chr22	39972161	39972162	rs3788556	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.1	NR	rs3788556-C	0.56038034270415	5E-8	(IGP39)	0.1799	[0.12-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
889	chr22	39975306	39975307	rs5757736	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.1	NR	rs5757736-G	0.432406	3E-9		0.03772907	[0.025-0.05] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
889	chr22	39975690	39975691	rs8139773	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	22q13.1	NR	rs8139773-?		1E-9				NR [8377093]	N
889	chr22	39975913	39975914	rs28631967	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	22q13.1		rs28631967-?	NR	1E-9				NR [7857346] (imputed)	N
889	chr22	39976127	39976128	rs132570	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.1	CACNA1I	rs132570-?	NR	1E-11		0.013624602	[0.0097-0.0176] unit increase	NR [7306098]	N
889	chr22	39976127	39976128	rs132570	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	CACNA1I	rs132570-A	NR	2E-11		0.02010179	[0.014-0.026] unit increase	Affymetrix [NR]	N
889	chr22	39976132	39976133	rs132571	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.1	Intergenic	rs132571-A	0.4744	3E-12	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
889	chr22	39976185	39976186	rs5750853	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.1	NR	rs5750853-T	NR	3E-10		6.321	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
889	chr22	39976185	39976186	rs5750853	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	CACNA1I	rs5750853-T	NR	3E-11		0.020491894	[0.014-0.027] unit decrease	Affymetrix [NR]	N
890	chr22	39982720	39982721	rs132575	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	22q13.1	CACNA1I	rs132575-?	NR	2E-8		5.625	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
890	chr22	39987017	39987018	rs199694726	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Negative urgency	22,795 European ancestry individuals	NA	22q13.1	CACNA1I	rs199694726-?	0.6163	4E-8		0.051	[0.069-0.033] unit decrease	Illumina [11434023] (imputed)	N
890	chr22	39990774	39990775	rs5750854	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	CACNA1I	rs5750854-T	NR	5E-8		0.018854097	[0.012-0.026] unit decrease	Affymetrix [NR]	N
890	chr22	39992245	39992246	rs111672076	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	22q13.1		rs111672076-?	NR	5E-8				NR [7857346] (imputed)	N
890	chr22	40000220	40000221	rs5750857	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	22q13.1		rs5750857-?	NR	2E-10		0.0191	NR unit increase	NR [4484088] (imputed)	N
890	chr22	40000312	40000313	rs5995756	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs5995756-?	NR	7E-11				NR [2625067]	N
890	chr22	40000312	40000313	rs5995756	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs5995756-T	0.4612	9E-10		0.06848255	[0.047-0.09] unit increase	NR [NR]	N
890	chr22	40000312	40000313	rs5995756	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs5995756-?		2E-9				NR [8377093]	N
890	chr22	40000312	40000313	rs5995756	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA		CACNA1I	rs5995756-T	NR	3E-11	(EA)	1.075	[1.05-1.1]	Illumina [6627481] (imputed)	N
890	chr22	40000312	40000313	rs5995756	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		CACNA1I	rs5995756-T		4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
890	chr22	40002569	40002570	rs5995757	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	22q13.1	CACNA1I	rs5995757-C	0.426	7E-11		0.013329337	[0.0093-0.0173] unit increase	Affymetrix [up to 18485882] (imputed)	N
890	chr22	40006034	40006035	rs3788567	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.1	NR	rs3788567-T	NR	2E-11		1.08	[NR]	Illumina [7158791] (imputed)	N
890	chr22	40006985	40006986	rs926231	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	22q13.1	NR	rs926231-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
890	chr22	40009335	40009336	rs1008677	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	22q13.1		rs1008677-?	NR	1E-11		0.025	NR unit increase	NR [4502103] (imputed)	N
890	chr22	40010635	40010636	rs5757748	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.1	Intergenic	rs5757748-A	0.3495	2E-10	(MTAG)	0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
890	chr22	40011272	40011273	rs3788568	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.1	CACNA1I	rs3788568-T	NR	9E-10		0.018673336	[0.013-0.025] unit decrease	Affymetrix [NR]	N
890	chr22	40019772	40019773	rs12170452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.1		rs12170452-A	0.4507	8E-14		0.0105	[0.0078-0.0132] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
890	chr22	40019772	40019773	rs12170452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.1	Intergenic	rs12170452-A	0.4507	7E-17	(MTAG)	0.011	[0.0085-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
890	chr22	40034592	40034593	rs2092179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.1	ENTHD1	rs2092179-?	NR	1E-6	(LPE 20:4)	0.21543604	[0.13-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
890	chr22	40051165	40051166	rs732381	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	22q13.1	CACNA1I, ENTHD1	rs732381-?		7E-11				NR [6786993] (imputed)	N
890	chr22	40070233	40070234	rs714031	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.1	CACNA1I	rs714031-C	NR	3E-7		1.0559661	[1.03-1.08]	Illumina [6627481] (imputed)	N
890	chr22	40070233	40070234	rs714031	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	22q13.1	intergenic	rs714031-C	NR	8E-8		1.059322	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
890	chr22	40075399	40075400	rs2294369	24709693	Cobb J	2014-04-08	Pharmacogenomics J	Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.	Response to methotrexate in juvenile idiopathic arthritis	694 European ancestry child cases	NA	22q13.1	CACNA1I, APOBEC3B, APOBEC3C, SYNGR1	rs2294369-A	NR	9E-8	(AJC)	2.77	[1.77-3.77] unit increase	Illumina [586062]	N
890	chr22	40078570	40078571	rs58055559	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	22q13.1	CACNA1I	rs58055559-T	0.291	2E-12		0.03		Illumina [243345]	N
890	chr22	40087388	40087389	rs5757773	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	22q13.1	NR	rs5757773-?	NR	3E-8		1.06226	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
891	chr22	40207398	40207399	rs117811619	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 11, projection of the nose)	2,187 European ancestry individuals	NA	22q13.1	NR	rs117811619-A	0.02018	3E-6		0.5042	[0.29-0.71] unit increase	Illumina [10677593] (imputed)	N
892	chr22	40291806	40291807	rs137955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q13.1	ENTHD1	rs137955-C	0.56276	3E-9		0.013245075	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
892	chr22	40291806	40291807	rs137955	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q13.1	ENTHD1	rs137955-T	NR	1E-8		1.0568	NR	Affymetrix, Illumina [8278136] (imputed)	N
892	chr22	40293462	40293463	rs137956	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	22q13.1	ENTHD1, GRAP2	rs137956-?	NR	5E-8		1.1363636	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
892	chr22	40317125	40317126	rs739091	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.1		rs739091-?	NR	4E-9				NR [~ 8900000] (imputed)	N
892	chr22	40342992	40342993	rs148328786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs148328786-A	0.986487	5E-12				Affymetrix, Illumina [17210439] (imputed)	N
892	chr22	40342992	40342993	rs148328786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q13.1	NR	rs148328786-A	0.9861	7E-14		0.065038	[0.048-0.082] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
893	chr22	40384712	40384712	rs34726410	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	22q13.1	NR	rs34726410-?	NR	2E-6		0.141925	[0.084-0.2] unit increase	NR [13958389] (imputed)	N
893	chr22	40436972	40436973	rs11704416	23065704	Amin Al Olama A	2012-10-12	Hum Mol Genet	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	22q13.1	TNRC6B	rs11704416-C	NR	4E-7	(All)	1.06	[1.02-1.10]	Illumina [~ 2600000] (imputed)	N
893	chr22	40436972	40436973	rs11704416	23065704	Amin Al Olama A	2012-10-12	Hum Mol Genet	A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.	Prostate cancer	5,132 European ancestry non-aggressive cases, 5,953 European ancestry aggressive cases, 11,463 European ancestry controls	22,387 European ancestry non-aggressive cases, 2,008 European ancestry aggressive cases, up to 24,726 European ancestry controls	22q13.1	TNRC6B	rs11704416-C	NR	4E-6	(Aggressive)	1.05	[0.96-1.15]	Illumina [~ 2600000] (imputed)	N
893	chr22	40452118	40452119	rs9623117	19117981	Sun J	2009-01-01	Cancer Res	Sequence variants at 22q13 are associated with prostate cancer risk.	Prostate cancer	1,235 European ancestry aggressive cases, 1,599 European ancestry controls	1,215 European ancestry aggressive cases, 2,213 European ancestry non-aggressive cases, 1,208 European ancestry controls, 1,034 aggressive cases, 921 non-aggressive cases, 2,231 controls	22q13.1	TNRC6B	rs9623117-C	0.21	5E-7		1.18	[1.11-1.26]	Affymetrix, Illumina [~ 2000000] (imputed)	N
893	chr22	40471187	40471188	rs58133635	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	22q13.1	NR	rs58133635-T	0.2	5E-12		1.07	[1.05-1.09]	Illumina [20370935] (imputed)	N
893	chr22	40479810	40479811	rs9607685	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	22q13.1	TNRC6B	rs9607685-?		4E-8				Illumina [5041948] (imputed)	N
893	chr22	40499106	40499107	rs34584683	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q13.1	NR	rs34584683-T	NR	1E-16		1.071	[1.05-1.09]	Affymetrix, Illumina [29235255] (imputed)	N
894	chr22	40539524	40539525	rs12483853	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	NR	rs12483853-C	0.1411	1E-18	(EA)	0.0783	[0.061-0.096] unit increase	Illumina [~ 11800000] (imputed)	N
894	chr22	40547568	40547568	rs386395438	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q13.1	TNRC6B	rs386395438-GAAAA	0.5525	2E-9		0.02205186	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
894	chr22	40550104	40550105	rs9611279	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.1		rs9611279-?	NR	8E-10				NR [~ 8900000] (imputed)	N
894	chr22	40550106	40550107	rs3950173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.1		rs3950173-?	NR	2E-14				NR [~ 8900000] (imputed)	N
894	chr22	40554444	40554445	rs4402860	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	22q13.1	TNRC6B	rs4402860-T	0.24728	1E-12		1.11	[1.08-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
894	chr22	40555992	40555993	rs11705370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs11705370-A	0.583295	5E-26				Affymetrix, Illumina [24246363] (imputed)	N
894	chr22	40555992	40555993	rs11705370	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q13.1		rs11705370-A	0.5981	3E-15		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
894	chr22	40556446	40556447	rs4820405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.1	TNRC6B	rs4820405-A	0.596594	9E-21		0.020934112	[0.017-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr22	40558063	40558064	rs12484438	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q13.1	TNRC6B	rs12484438-T	0.660603	7E-19		0.0128869	[0.01-0.016] unit increase	Affymetrix [12370749]	N
894	chr22	40558063	40558064	rs12484438	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	Intergenic	rs12484438-?		1E-8		1.11	[1.07-1.15]	Illumina [7645193] (imputed)	N
894	chr22	40558063	40558064	rs12484438	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	22q13.1	NA	rs12484438-T	0.6517	5E-19		0.016	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
894	chr22	40561758	40561759	rs6001817	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	22q13.1	FAM83F, TNRC6B	rs6001817-G	0.4062	7E-17		1.0313531		Affymetrix [11880941] (imputed)	N
894	chr22	40585743	40585744	rs738450	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.1	TNRC6B	rs738450-G	0.599214	2E-18		0.0201228	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
894	chr22	40591257	40591258	rs6001831	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.1	NR	rs6001831-G	0.598241	4E-18		0.016426	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
894	chr22	40591257	40591258	rs6001831	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.1	NR	rs6001831-G	0.598205	9E-29		0.020557	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
894	chr22	40591257	40591258	rs6001831	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs6001831-G	0.582087	1E-26				Affymetrix, Illumina [20825802] (imputed)	N
894	chr22	40592080	40592081	rs11301805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q13.1	TNRC6B	rs11301805-C	0.6046	3E-10		0.02283313	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
894	chr22	40592213	40592214	rs6001832	25637336	Chan JP	2015-02-01	Age (Dordr)	Genetics of hand grip strength in mid to late life.	Hand grip strength	2,088 European ancestry individuals	541 European ancestry individuals	22q13.1	TNRC6B	rs6001832-G	NR	5E-6	(Model 1 - age, sex)	1.089	[0.66-1.51] unit decrease	Affymetrix [at least 549281] (imputed)	N
894	chr22	40599630	40599631	rs8137636	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.1		rs8137636-G	0.44	4E-28		11.0	z score increase	Affymetrix [9061022] (imputed)	N
894	chr22	40599630	40599631	rs8137636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.1	NR	rs8137636-A	0.596856	2E-29		0.022029	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
894	chr22	40600486	40600487	rs6001834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs6001834-A	0.578513	2E-15				Affymetrix, Illumina [24332387] (imputed)	N
894	chr22	40603422	40603434	rs572740451	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	22q13.1	TNRC6B	rs572740451-A	0.571243	2E-9		0.0136221675	[0.0091-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
894	chr22	40604944	40604945	rs4820408	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	22q13.1	NR	rs4820408-T	NR	3E-10		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
894	chr22	40604944	40604945	rs4820408	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	22q13.1	TNRC6B	rs4820408-G	0.58	2E-16		0.02	[0.016-0.024] unit decrease	Illumina [6108953] (imputed)	N
894	chr22	40604944	40604945	rs4820408	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	22q13.1	ENTHD1, GRAP2, FAM83F, LOC100130899, ADSL, SGSM3, MKL1, MCHR1	rs4820408-T	0.383768902570506	2E-8		0.015630927	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
894	chr22	40604944	40604945	rs4820408	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	22q13.1	TNRC6B	rs4820408-T	0.391	7E-6	(EA, men)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
894	chr22	40604944	40604945	rs4820408	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	22q13.1	TNRC6B	rs4820408-T	0.389	4E-6	(EA)	0.015	[0.0087-0.0213] kg/m2 increase	Affymetrix, Illumina [2550021]	N
894	chr22	40604944	40604945	rs4820408	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	22q13.1	TNRC6B	rs4820408-T	0.386	2E-6		0.015	[0.009-0.0212] kg/m2 increase	Affymetrix, Illumina [2550021]	N
894	chr22	40611011	40611012	rs28722029	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	22q13.1	NR	rs28722029-A	0.323844	2E-9		0.044281	[0.03-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
894	chr22	40627058	40627059	rs138049	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q13.1	TNRC6B	rs138049-C	0.535125	2E-15		0.018006835	[0.014-0.022] unit increase	Affymetrix [93095623] (imputed)	N
894	chr22	40632046	40632047	rs4821935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.1	TNRC6B	rs4821935-C	0.74754	2E-14		0.019837726	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
895	chr22	40632509	40632510	rs4821936	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Uterine fibroids	5,954 Japanese ancestry cases, 95,010 Japanese ancestry controls	NA	22q13.1		rs4821936-G	0.355925413	7E-19		1.2110424	[1.160905801-1.263344225]	Illumina [8919992] (imputed)	N
895	chr22	40635275	40635276	rs12485003	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q13.1	TNRC6B	rs12485003-A	0.0889	1E-16		0.4076	[0.31-0.5] mmHg increase	Affymetrix [NR] (imputed)	N
895	chr22	40635275	40635276	rs12485003	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	22q13.1	TNRC6B	rs12485003-G		2E-6		0.293	unit decrease	Affymetrix [at least 2696785] (imputed)	N
895	chr22	40635275	40635276	rs12485003	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	22q13.1	TNRC6B	rs12485003-G		5E-13		0.327	unit decrease	Affymetrix [at least 2696785] (imputed)	N
895	chr22	40650283	40650284	rs9611302	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q13.1		rs9611302-A	0.1142	8E-9		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
895	chr22	40652872	40652873	rs12484776	21460842	Cha PC	2011-04-03	Nat Genet	A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.	Uterine fibroids	1,607 Japanese ancestry cases, 1,428 Japanese ancestry controls	3,439 Japanese ancestry cases, 3,244 Japanese ancestry controls	22q13.1	TNRC6B	rs12484776-G	0.36	3E-12		1.23	[1.11-1.37]	Illumina [457044]	N
895	chr22	40654275	40654276	rs12628051	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA		NA	rs12628051-T	0.6407	3E-19		0.0161	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
895	chr22	40659250	40659251	rs4821939	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	22q13.1	TNRC6B	rs4821939-A	0.2	8E-16		1.08	[1.06-1.10]	Affymetrix, Illumina [8662096] (imputed)	N
895	chr22	40659572	40659573	rs4821940	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Chronotype	101,185 European ancestry individuals	NA	22q13.1	NR	rs4821940-C	0.45	9E-9		0.026	[0.017-0.035] unit increase	Affymetrix [at least 12428592] (imputed)	N
895	chr22	40659572	40659573	rs4821940	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	22q13.1	SGSM3	rs4821940-T	0.45	4E-8		1.05	[1.03-1.07]	NR [16760980] (imputed)	N
895	chr22	40659572	40659573	rs4821940	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Chronotype	127,898 British individuals	89,283 individuals	22q13.1	SGSM3	rs4821940-T	0.45	5E-6		0.022	[0.014-0.03] unit increase	NR [16760980] (imputed)	N
895	chr22	40659572	40659573	rs4821940	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	22q13.1	TNRC6B	rs4821940-C	0.55	1E-8		0.026	[0.018-0.034] unit increase	Affymetrix [~ 73355677] (imputed)	N
895	chr22	40667995	40667996	rs880379	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.1	NR	rs880379-G	0.785936	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
895	chr22	40668987	40668988	rs2413620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	22q13.1		rs2413620-G	NR	4E-27		0.1028	[0.084-0.121] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
895	chr22	40668987	40668988	rs2413620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	22q13.1		rs2413620-G	0.357337243	8E-16		0.11446253	[0.087-0.142] unit increase	Illumina [13401454] (imputed)	N
895	chr22	40669647	40669648	rs733381	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	22q13.1	NA	rs733381-A	0.7717	3E-9		0.0122	[0.0081-0.0163] unit increase	NR [~ 27400000] (imputed)	N
895	chr22	40669647	40669648	rs733381	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	22q13.1	NA	rs733381-A	0.7712	8E-16		0.0161	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
895	chr22	40676985	40676986	rs5750929	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.1	NR	rs5750929-A	0.3999	5E-15				NR [9056863] (imputed)	N
895	chr22	40684059	40684060	rs6001864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q13.1	NR	rs6001864-G	0.348476	4E-10		0.012146	[0.0084-0.0159] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
895	chr22	40687756	40687757	rs5757906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	22q13.1	TNRC6B	rs5757906-T	0.749	5E-9		0.02401271	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
895	chr22	40688916	40688917	rs5757907	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.1		rs5757907-G	0.44	2E-13		7.38	z score increase	Affymetrix [9061022] (imputed)	N
895	chr22	40690384	40690385	rs4820410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.1	TNRC6B	rs4820410-G	0.346046	3E-11		0.015402914	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
895	chr22	40690384	40690385	rs4820410	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.1	NR	rs4820410-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
895	chr22	40690384	40690385	rs4820410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.1		rs4820410-?	NR	6E-17				NR [~ 8900000] (imputed)	N
895	chr22	40697580	40697581	rs139909	19570815	Estrada K	2009-07-01	Hum Mol Genet	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	22q13.1	TNRC6B, ADSL	rs139909-T	0.68	2E-7		0.25	[0.03-0.47] cm increase	Affymetrix, Illumina, Perlegen [2228850] (imputed)	N
895	chr22	40703074	40703075	rs12484951	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	Intergenic	rs12484951-?		1E-12		1.04	[1.03-1.06]	Illumina [7645193] (imputed)	N
895	chr22	40703074	40703075	rs12484951	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	NR	rs12484951-?		2E-12		1.15	(1.1-1.19)	Illumina [7645193] (imputed)	N
895	chr22	40703074	40703075	rs12484951	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	22q13.1	TNRC6B	rs12484951-G	0.25232	3E-13		1.11	[1.08-1.14]	Affymetrix, Illumina [43421991] (imputed)	N
895	chr22	40703244	40703245	rs6001872	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	22q13.1	TNRC6B	rs6001872-A	0.65069	2E-17		0.012536	[0.0097-0.0154] unit increase	Affymetrix [12370749]	N
895	chr22	40703244	40703245	rs6001872	31779001	Franck M	2019-11-28	Lifestyle Genom	Prevention of Potential Adverse Metabolic Effects of a Supplementation with Omega-3 Fatty Acids Using a Genetic Score Approach.	Impaired insulin sensitivity in response to n-3 PUFA supplementation	32 French Canadian ancestry cases, 106 French Canadian ancestry controls	NA	22q13.1	TNRC6B	rs6001872-G	0.31	1E-6		4.03	[2.24-7.26]	Illumina [2668805]	N
895	chr22	40703244	40703245	rs6001872	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	22q13.1	TNRC6B	rs6001872-G	0.35109602268004	1E-6		0.002715	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
895	chr22	40703887	40703888	rs139910	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	22q13.1	TNRC6B	rs139910-G	0.2497	3E-7		0.006	[0.0036-0.0084] unit increase	Affymetrix [~ 7740000] (imputed)	N
895	chr22	40704051	40704052	rs139911	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.1	NR	rs139911-C	0.4271	5E-14				NR [9056863] (imputed)	N
895	chr22	40704051	40704052	rs139911	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	22q13.1	TNRC6B	rs139911-?	NR	1E-8		0.0141502	[0.0093-0.019] unit decrease	Affymetrix [25921788] (imputed)	N
895	chr22	40704051	40704052	rs139911	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	22q13.1	TNRC6B	rs139911-C	0.42779999999999996	1E-18		1.0333781		Affymetrix [11880941] (imputed)	N
895	chr22	40704051	40704052	rs139911	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q13.1	TNRC6B	rs139911-C	0.42779999999999996	1E-18		1.0341709		Affymetrix [11880941] (imputed)	N
895	chr22	40704051	40704052	rs139911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	22q13.1		rs139911-?	NR	7E-17				NR [~ 8900000] (imputed)	N
895	chr22	40711227	40711227	rs3830738	31249589	Edwards TL	2019-06-12	Front Genet	A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.	Uterine fibroids	8,168 European ancestry cases, 65,134 European ancestry controls, 1,278 African ancestry cases, 1,914 African ancestry  controls	12,111 European ancestry cases, 138,477 European ancestry controls, 247 African ancestry cases, 713 African ancestry controls	22q13.1	TNRC6B	rs3830738-AT	0.21	3E-13		1.098901	[1.08-1.12]	Affymetrix, Illumina [NR] (imputed)	N
895	chr22	40711619	40711620	rs17332320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	TNRC6B	rs17332320-?		4E-13		1.05	[1.03-1.06]	Illumina [7645193] (imputed)	N
895	chr22	40711619	40711620	rs17332320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	TNRC6B	rs17332320-?		2E-12		1.15	[1.10-1.19]	Illumina [7645193] (imputed)	N
895	chr22	40711619	40711620	rs17332320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease (multivariate analysis)	up to 7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	TNRC6B	rs17332320-?		5E-13	(uterine fibroid, endometriosis)			Illumina [7645193] (imputed)	N
895	chr22	40711619	40711620	rs17332320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,975 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	TNRC6B	rs17332320-?		7E-9		1.1	[1.07-1.14]	Illumina [7645193] (imputed)	N
895	chr22	40711619	40711620	rs17332320	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Gynecologic disease	7,315 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	22q13.1	TNRC6B	rs17332320-?		2E-8				Illumina [7645193] (imputed)	N
895	chr22	40712636	40712637	rs6001877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q13.1		rs6001877-A	NR	3E-14		0.0129	[0.0096-0.0162] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
895	chr22	40712636	40712637	rs6001877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	22q13.1		rs6001877-A	NR	1E-22		0.0191	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
895	chr22	40713860	40713861	rs139913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	22q13.1		rs139913-A	0.47839	4E-12		0.0221691	[0.016-0.028] unit decrease	Illumina [13479178] (imputed)	N
895	chr22	40713860	40713861	rs139913	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	22q13.1	NR	rs139913-T	NR	1E-6		0.014	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
895	chr22	40713860	40713861	rs139913	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	22q13.1	TNRC6B	rs139913-A	0.487	2E-15	(Japanese)	0.027	[0.021-0.033] unit decrease	Illumina [6108953] (imputed)	N
895	chr22	40714355	40714356	rs139055942	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q13.1	TNRC6B	rs139055942-G	0.6554	4E-9		0.3345	[0.22-0.45] mmHg increase	Affymetrix [NR] (imputed)	N
895	chr22	40718099	40718100	rs4821942	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	22q13.1		rs4821942-G	0.795894	2E-15		0.0656313	[0.049-0.083] increase	Affymetrix [NR]	N
895	chr22	40718099	40718100	rs4821942	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	22q13.1		rs4821942-G	0.795818	8E-15		0.0688398	[0.051-0.087] increase	Affymetrix [NR]	N
895	chr22	40720962	40720963	rs139915	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q13.1		rs139915-C	0.45	1E-16		8.26	z score increase	Affymetrix [9061022] (imputed)	N
895	chr22	40722744	40722745	rs4821943	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	22q13.1		rs4821943-G	NR	1E-8		0.048	[0.032-0.064] unit increase	Affymetrix, Illumina [25844936] (imputed)	N
895	chr22	40725023	40725024	rs10707775	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q13.1		rs10707775-C	NR	1E-9		0.0172	[0.012-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
895	chr22	40726182	40726183	rs139919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	22q13.1		rs139919-C	NR	2E-14		0.0215	[0.016-0.027] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
895	chr22	40726182	40726183	rs139919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q13.1		rs139919-?	NR	2E-9				NR [~ 8900000] (imputed)	N
895	chr22	40726748	40726749	rs139920	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a pub or social club	124,047 European ancestry cases, 328,255 European ancestry controls	NA	22q13.1	LOC100130899, TNRC6B, ADSL, SGSM3, MKL1	rs139920-C	0.487875	3E-10		0.00580574	[0.004-0.0076] unit decrease	NR [NR] (imputed)	N
895	chr22	40729613	40729614	rs470113	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	22q13.1	TNRC6B	rs470113-A	0.8106	7E-6	(EA)	0.2661	[0.15-0.38] mmHg decrease	Illumina [242296]	N
895	chr22	40729613	40729614	rs470113	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	22q13.1	TNRC6B	rs470113-A	0.8114	2E-9		0.2427	[0.16-0.32] mmHg decrease	Illumina [242296]	N
895	chr22	40731133	40731134	rs11703324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs11703324-A	NR	6E-10		0.0299	[0.02-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
895	chr22	40731133	40731134	rs11703324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs11703324-A	NR	8E-10		0.0296	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
895	chr22	40733776	40733777	rs9611310	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.1	NR	rs9611310-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
895	chr22	40738485	40738486	rs117820381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs117820381-A	NR	1E-9		0.0482	[0.033-0.064] unit increase	Affymetrix [9000000] (imputed)	N
895	chr22	40738485	40738486	rs117820381	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs117820381-A	NR	4E-10		0.0497	[0.034-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
895	chr22	40743792	40743793	rs5757922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	22q13.1		rs5757922-G	0.191760145	3E-8		0.11985115	[0.077-0.162] unit decrease	Illumina [13429768] (imputed)	N
896	chr22	40778230	40778231	rs17001868	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	22q13.1	MKL1, SGSM3, TNRC6B	rs17001868-?	0.245	7E-7				Affymetrix [536506]	N
896	chr22	40778230	40778231	rs17001868	25342443	Lindstrom S	2014-10-24	Nat Commun	Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.	Mammographic density (dense area)	7,600 European ancestry individuals	343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals	22q13.1	SGSM3, MKL1, TNRC6B	rs17001868-A	0.92	2E-13		0.18	[0.12-0.24] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
896	chr22	40779963	40779964	rs73167017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs73167017-A	NR	3E-12		0.0376	[0.027-0.048] unit increase	Affymetrix [9000000] (imputed)	N
896	chr22	40779963	40779964	rs73167017	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.1	NR	rs73167017-A	NR	3E-12		0.0378	[0.027-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
896	chr22	40790564	40790565	rs147122512	31393916	Andaleon A	2019-08-08	PLoS One	Genetically regulated gene expression underlies lipid traits in Hispanic cohorts.	High density lipoprotein cholesterol levels	11,103 Hispanic or Latin American ancestry individuals	NA	22q13.1	NR	rs147122512-?	NR	2E-8	(conditional)	0.052	[0.034-0.07] unit decrease (conditional)	Illumina [1770809] (imputed)	N
896	chr22	40809033	40809034	rs5757946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.1	MKL1	rs5757946-G	0.349557	4E-9		0.01405857	[0.0094-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
896	chr22	40810945	40810946	rs729982	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	22q13.1	MKL1	rs729982-C	0.19039	5E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [43421991] (imputed)	N
896	chr22	40810945	40810946	rs729982	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	22q13.1	NR	rs729982-?	NR	7E-6		0.0303	[0.017-0.043] unit decrease	Illumina [at least 560000] (imputed)	N
896	chr22	40814499	40814500	rs878756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q13.1	MKL1	rs878756-C	0.387577	5E-13		0.016813306	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
896	chr22	40814499	40814500	rs878756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q13.1	MKL1	rs878756-C	0.387611	4E-14		0.017549861	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
896	chr22	40814499	40814500	rs878756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q13.1	MKL1	rs878756-C	0.387607	3E-9		0.013731663	[0.0092-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
896	chr22	40814499	40814500	rs878756	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.1	Intergenic	rs878756-T	0.6118	2E-8	(MTAG)	0.0103	[0.0068-0.0138] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
896	chr22	40816840	40816841	rs2072857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q13.1		rs2072857-A	NR	1E-31		0.0271	[0.023-0.032] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
896	chr22	40820150	40820151	rs5757949	19570815	Estrada K	2009-07-01	Hum Mol Genet	A genome-wide association study of northwestern Europeans involves the C-type natriuretic peptide signaling pathway in the etiology of human height variation.	Height	10,074 European ancestry individuals	6,912 European ancestry individuals	22q13.1	SGSM3, MKL1	rs5757949-T	NR	4E-6				Affymetrix, Illumina, Perlegen [2228850] (imputed)	N
896	chr22	40828374	40828375	rs8139974	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.1	NR	rs8139974-T	0.486083	2E-8		0.035327315	[0.023-0.048] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
896	chr22	40828374	40828375	rs8139974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.1	Intergenic	rs8139974-A	0.5106	4E-10	(MTAG)	0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
896	chr22	40828374	40828375	rs8139974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.1	Intergenic	rs8139974-A	0.5106	2E-8		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
896	chr22	40833841	40833842	rs76747430	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	22q13.1	NR	rs76747430-G	0.1839	5E-6		0.1805	[0.1-0.26] unit decrease	Illumina [10677593] (imputed)	N
896	chr22	40837834	40837835	rs112785404	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q13.1	MKL1	rs112785404-T	0.813	3E-10		0.0045	[0.0031-0.0059] unit decrease	Affymetrix [NR] (imputed)	N
896	chr22	40862119	40862120	rs9607721	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	22q13.1	MKL1	rs9607721-?	NR	3E-9		0.02615	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
896	chr22	40862612	40862613	rs17001943	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	22q13.1	MKL1	rs17001943-A	0.817	2E-16		0.865	[0.56-1.17] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
896	chr22	40872147	40872147	rs549794558	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.1	MRTFA	rs549794558-CA	0.103	5E-10		0.02	[0.014-0.026] unit decrease	Affymetrix [18391927] (imputed)	N
896	chr22	40876233	40876234	rs6001930	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	22q13.1		rs6001930-T	NR	5E-34		0.9	[0.89-0.92]	Affymetrix, Illumina [NR] (imputed)	N
896	chr22	40876233	40876234	rs6001930	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	MKL1	rs6001930-C	0.1	4E-34	(EA)	1.12	[1.09-1.16] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
896	chr22	40876233	40876234	rs6001930	29058716	Milne RL	2017-10-23	Nat Genet	Identification of ten variants associated with risk of estrogen-receptor-negative breast cancer.	Breast cancer (estrogen-receptor negative)	14,135 European ancestry cases, 58,126 European ancestry controls	7,333 European ancestry cases, 42,468 European ancestry controls	22q13.1	NR	rs6001930-C	0.1	2E-11		1.14	[1.08-1.19] (Oncoarray)	Illumina [~ 11500000] (imputed)	N
896	chr22	40876233	40876234	rs6001930	27117709	Couch FJ	2016-04-27	Nat Commun	Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer.	Breast cancer	4,939 European ancestry estrogen receptor-negative cases, 14,352 European ancestry controls	7,333 European ancestry estrogen receptor-negative cases, 7,797 European ancestry BRCA1 mutation carrier cases, 7,455  European ancestry BRCA1 mutation carrier controls, 42,468 European ancestry controls	22q13.1	NR	rs6001930-?	0.11	2E-6		1.07	[1.01-1.14] (BRCA1 carriers)	Illumina [10909381] (imputed)	N
896	chr22	40876233	40876234	rs6001930	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	22q13.1	NR	rs6001930-C	0.11	4E-14		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 14000000] (imputed)	N
896	chr22	40876233	40876234	rs6001930	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	22q13.1	NR	rs6001930-C	0.11	2E-20		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 11600000] (imputed)	N
896	chr22	40876233	40876234	rs6001930	23535733	Garcia-Closas M	2013-04-01	Nat Genet	Genome-wide association studies identify four ER negative-specific breast cancer risk loci.	Breast cancer	4,193 European ancestry cases, 35,194 European ancestry controls	6,514 European ancestry cases, 41,455 European ancestry controls	22q13.1	MKL1	rs6001930-C	0.107	2E-6		1.14	[1.08-1.20]	Illumina [NR]	N
896	chr22	40876233	40876234	rs6001930	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	22q13.1	MKL1	rs6001930-C	0.11	9E-19		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 2600000] (imputed)	N
896	chr22	40877383	40877384	rs17001974	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	22q13.1	MKL1	rs17001974-?	NR	2E-13		0.02934	[0.022-0.037] unit decrease novel	Illumina [6108953] (imputed)	N
896	chr22	40877513	40877514	rs6001931	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	22q13.1		rs6001931-A	0.295588	3E-13		0.0226552	[0.017-0.029] unit decrease	Illumina [13478778] (imputed)	N
896	chr22	40877634	40877635	rs6001932	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	22q13.1		rs6001932-?	NR	7E-9		1.14588	[1.1-1.19]	NR [682398]	N
896	chr22	40880212	40880213	rs17001977	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	22q13.1	MKL1	rs17001977-?	NR	7E-15				Affymetrix, Illumina [at least 5248638] (imputed)	N
896	chr22	40880903	40880904	rs1807582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.1	NR	rs1807582-A	0.076679	1E-11		0.024112	[0.017-0.031] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
896	chr22	40883598	40883599	rs10483205	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	22q13.1	NR	rs10483205-T	0.290889975	2E-7		0.1527	[0.095-0.21] unit decrease	Affymetrix [536506]	N
896	chr22	40884661	40884662	rs112880707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	22q13.1	MKL1	rs112880707-T	0.1713	1E-37		0.0052	[0.0042-0.0062] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
896	chr22	40884661	40884662	rs112880707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	22q13.1	MKL1	rs112880707-T	0.1086	1E-28		0.0056	[0.0044-0.0068] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
896	chr22	40884661	40884662	rs112880707	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	22q13.1	MKL1	rs112880707-T	0.2813	3E-9		0.0044	[0.003-0.0058] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
896	chr22	40885498	40885499	rs73167082	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	22q13.1	TNRC6B	rs73167082-C	0.18	1E-17		8.544	NR z score increase	Illumina [26237160] (imputed)	N
896	chr22	40892793	40892794	rs6001939	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	22q13.1	MKL1	rs6001939-?	NR	7E-13		0.03254	[0.024-0.041] unit increase novel	Illumina [6108953] (imputed)	N
897	chr22	40904707	40904708	rs66987842	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.1	NR	rs66987842-C	0.11	3E-35	(EA)	0.1233	[0.1-0.14] unit increase	Illumina [~ 11800000] (imputed)	N
897	chr22	40932327	40932328	rs8139521	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.1	Intergenic	rs8139521-A	0.258	2E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
897	chr22	40943031	40943032	rs6001960	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	22q13.1	MKL1	rs6001960-?	NR	1E-10		0.0381345	[0.026-0.05] unit decrease	Illumina [4804024] (imputed)	N
897	chr22	40943031	40943032	rs6001960	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	22q13.1	MKL1	rs6001960-A	0.282	3E-8		0.04	[0.026-0.054] unit increase	Affymetrix [7947838] (imputed)	N
897	chr22	40960691	40960692	rs5995875	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	22q13.1	MKL1	rs5995875-?	NR	3E-12		0.137	[0.176-0.099] unit decrease	Illumina [12039487] (imputed)	N
897	chr22	40965770	40965771	rs199796575	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	22q13.1	MKL1	rs199796575-A	0.92	2E-8		0.589	[0.38-0.79] unit decrease	Affymetrix [NR] (imputed)	N
897	chr22	40978117	40978118	rs5750968	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.1	NR	rs5750968-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
897	chr22	40996366	40996367	rs17002034	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	22q13.2		rs17002034-?	NR	6E-11		1.1628	[1.12-1.21]	NR [682398]	N
897	chr22	40996366	40996367	rs17002034	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q13.2	NR	rs17002034-?	NR	4E-6		1.3976	[NR]	Affymetrix [722112]	N
897	chr22	40997110	40997111	rs17002036	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Breast size	5,609 Japanese ancestry female individuals	NA	22q13.2	NR	rs17002036-A	0.288654611	2E-7		0.1546	[0.097-0.212] unit decrease	Affymetrix [536506]	N
897	chr22	41009706	41009707	rs73169065	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	22q13.2		rs73169065-T	NR	5E-12		1.126126	[1.09-1.17]	Affymetrix [7846216] (imputed)	N
897	chr22	41014084	41014084	rs569369507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q13.2		rs569369507-GT	NR	4E-10		0.0228	[0.016-0.03] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
897	chr22	41014084	41014084	rs569369507	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	22q13.2		rs569369507-GT	NR	3E-12		0.1436	[0.1-0.18] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
897	chr22	41014084	41014084	rs569369507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.2	MKL1	rs569369507-GT	0.125974	2E-9		0.020807847	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
897	chr22	41015882	41015883	rs5995881	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	22q13.2		rs5995881-G	NR	4E-16		1.1558021	NR	Affymetrix [7846216] (imputed)	N
897	chr22	41019947	41019948	rs6001982	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs6001982-A	0.1066	1E-34	(EA)	0.1207	[0.1-0.14] unit increase	Illumina [~ 11800000] (imputed)	N
898	chr22	41027818	41027819	rs133047	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs133047-?	NR	6E-10				NR [2625067]	N
898	chr22	41027818	41027819	rs133047	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs133047-T	0.1014	1E-9		0.112798296	[0.076-0.149] unit increase	NR [NR]	N
898	chr22	41027818	41027819	rs133047	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA		NR	rs133047-?		3E-9				NR [8377093]	N
898	chr22	41027818	41027819	rs133047	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		MKL1	rs133047-?	NR	2E-8		0.018239945	[0.012-0.025] unit decrease	NR [7306098]	N
898	chr22	41027818	41027819	rs133047	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA		DNAJB7, LOC101927257, MCHR1, MIR4766, MKL1, RBX1, SLC25A17, ST13, XPNPEP3	rs133047-T		1E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [NR]	N
898	chr22	41027818	41027819	rs133047	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA		NR	rs133047-T	NR	7E-10		1.12	[NR]	Illumina [7158791] (imputed)	N
898	chr22	41042090	41042091	rs12159200	22310353	Man M	2012-02-07	Pharmacogenomics J	Beyond single-marker analyses: mining whole genome scans for insights into treatment responses in severe sepsis.	Treatment response for severe sepsis	1,446 individuals	NA	22q13.2	MKL1	rs12159200-?	NR	6E-7	(AA vs. not AA)			Illumina [856627]	N
898	chr22	41050985	41050986	rs17002069	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	MKL1	rs17002069-C	NR	2E-6	(EA)	1.0679	[1.04-1.09]	Illumina [6627481] (imputed)	N
898	chr22	41050985	41050986	rs17002069	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	MKL1	rs17002069-C	NR	1E-8		1.07	[1.05-1.09]	Illumina [6627481] (imputed)	N
898	chr22	41050985	41050986	rs17002069	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	22q13.2	intergenic	rs17002069-C	NR	2E-7		1.062	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
898	chr22	41059170	41059171	rs79898470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q13.2		rs79898470-?	NR	6E-12				NR [~ 8900000] (imputed)	N
898	chr22	41077612	41077613	rs45439291	28265093	Malik R	2017-03-06	Proc Natl Acad Sci U S A	Common coding variant in SERPINA1 increases the risk for large artery stroke.	Large artery stroke	up to 2,286 European ancestry cases, up to 376 South Asian cases, up to 8,884 European ancestry controls, up to 978 South Asian controls	NA	22q13.2	MCHR1	rs45439291-A	0.003	1E-6		2.08	[1.34-3.24]	Illumina [92772]	N
898	chr22	41085968	41085969	rs80533	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	22q13.2	MKL1	rs80533-G	0.847	1E-6		0.055	[-0.16844-0.27844] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
898	chr22	41085968	41085969	rs80533	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	22q13.2	NR	rs80533-A	NR	3E-8		0.01591	[0.01-0.022] unit increase	Affymetrix [10847151] (imputed)	N
898	chr22	41085968	41085969	rs80533	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs80533-A	NR	2E-9		6.012	z score increase	Affymetrix [10847151] (imputed)	N
898	chr22	41102073	41102074	rs5995902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	22q13.2		rs5995902-A	NR	1E-8		0.0132	[0.0087-0.0177] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
898	chr22	41119898	41119899	rs6519227	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	22q13.2	NR	rs6519227-?		4E-9				NR [520857]	N
898	chr22	41119898	41119899	rs6519227	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	22q13.2	NR	rs6519227-?		4E-9				NR [8956949]	N
898	chr22	41124165	41124166	rs200610334	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	22q13.2	NR	rs200610334-AT	NR	8E-6		1.34	[NR]	Illumina [up to 9792010] (imputed)	N
898	chr22	41153878	41153879	rs5758064	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	22q13.2	SLC25A17	rs5758064-T	0.523	2E-8		1.0538	[1.04-1.07]	Affymetrix, Illumina [7549318] (imputed)	N
899	chr22	41170062	41170063	rs2076674	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	22q13.2	SLC25A17	rs2076674-C	NR	3E-12		0.014344748	[0.01-0.018] unit increase	Illumina [242289]	N
899	chr22	41170062	41170063	rs2076674	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Low density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	22q13.2	NR	rs2076674-C	0.35	1E-8		0.019	unit increase	Illumina [242289]	N
899	chr22	41186488	41186489	rs117269860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	22q13.2	Intergenic	rs117269860-A	0.9691	9E-9		0.0377	[0.025-0.05] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
899	chr22	41202226	41202227	rs9611417	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	22q13.2	SLC25A17	rs9611417-G	0.012	5E-8		0.5616	unit increase	Affymetrix [7969123] (imputed)	N
899	chr22	41209303	41209304	rs138321	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	22q13.2	NR	rs138321-A	0.5149	2E-9		0.0656635	[0.044-0.087] unit increase	NR [NR]	N
899	chr22	41209303	41209304	rs138321	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	22q13.2	MKL1, MCHR1, SLC25A17, MIR4766, ST13, XPNPEP3, DNAJB7, RBX1	rs138321-A	0.502	2E-7		1.06003	[1.04-1.08]	NR [9372253] (imputed)	N
899	chr22	41209303	41209304	rs138321	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	22q13.2	MKL1, MCHR1, SLC25A17, MIR4766, ST13, XPNPEP3, DNAJB7, RBX1	rs138321-A	0.502	3E-7		1.08091		NR [9372253] (imputed)	N
899	chr22	41215671	41215672	rs13054099	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	22q13.2	SLC25A17	rs13054099-T	0.7399	5E-8		0.0091	[0.0058-0.0124] unit increase	Affymetrix [~ 7740000] (imputed)	N
899	chr22	41215671	41215672	rs13054099	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs13054099-T	NR	7E-14		7.49	z score decrease	Affymetrix [10847151] (imputed)	N
899	chr22	41215671	41215672	rs13054099	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	22q13.2	NR	rs13054099-T	0.257393	3E-10		6.3	z score decrease	NR [10847151] (imputed)	N
899	chr22	41215671	41215672	rs13054099	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	22q13.2	MCHR1	rs13054099-T	0.257393	1E-8		5.669	unit decrease	NR [10847151] (imputed)	N
899	chr22	41227085	41227086	rs138335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	22q13.2		rs138335-G	NR	6E-11		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
899	chr22	41227085	41227086	rs138335	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	22q13.2		rs138335-?	NR	2E-10		0.0137663	[0.0096-0.018] unit increase	NR [6912294] (imputed)	N
899	chr22	41233109	41233110	rs146910921	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia sp000436935 abundance in stool	5,959 Finnish ancestry individuals	NA	22q13.2		rs146910921-A	0.0104114	2E-8		0.376555	[0.24-0.51] unit increase	Illumina [7980478] (imputed)	N
899	chr22	41256801	41256802	rs103197	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs103197-?	NR	7E-9				NR [2625067]	N
899	chr22	41262851	41262852	rs138351	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	22q13.2	NR	rs138351-C		6E-10		0.08	[0.06-0.1] unit increase	NR [NR]	N
899	chr22	41264540	41264541	rs62237039	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs62237039-G	0.0366	5E-9	(EA)	0.101	[0.067-0.135] unit increase	Illumina [~ 11800000] (imputed)	N
899	chr22	41268924	41268925	rs138352	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q13.2	NR	rs138352-T	0.341431	8E-16		0.0163988	[0.012-0.02] unit increase	Affymetrix [15000001]	N
899	chr22	41272142	41272143	rs138354	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	22q13.2	XPNPEP3	rs138354-T	0.465401	8E-9		0.0120165	[0.0079-0.0161] unit increase	Affymetrix [NR] (imputed)	N
900	chr22	41314011	41314012	rs5758128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q13.2		rs5758128-T	NR	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
900	chr22	41314011	41314012	rs5758128	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	22q13.2	XPNPEP3	rs5758128-?	NR	6E-13		0.0186	[0.014-0.023] unit increase	Affymetrix [5701386] (imputed)	N
900	chr22	41331536	41331536	rs148222758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	22q13.2		rs148222758-TA	NR	3E-9		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
900	chr22	41339366	41339367	rs9611441	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	22q13.2	XPNPEP3	rs9611441-C	0.49	1E-8	(BMI-adjusted)	0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
900	chr22	41359785	41359786	rs2413631	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	22q13.2	NR	rs2413631-A	0.250038986850265	3E-8		0.009903878	[0.0064-0.0134] unit increase	NR [NR]	N
900	chr22	41359785	41359786	rs2413631	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	22q13.2	NR	rs2413631-A	0.250038986850265	3E-8		0.0062545035	[0.004-0.0085] unit increase	NR [NR]	N
900	chr22	41359785	41359786	rs2413631	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.2	Intergenic	rs2413631-A	0.2477	2E-8		0.0187	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
900	chr22	41359785	41359786	rs2413631	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	22q13.2	NR	rs2413631-A	NR	9E-11		0.01799	[0.013-0.023] unit increase	Affymetrix [10847151] (imputed)	N
900	chr22	41359785	41359786	rs2413631	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	22q13.2	NR	rs2413631-A	0.244787	2E-8		5.637	unit increase	NR [10847151] (imputed)	N
900	chr22	41389784	41389785	rs144960271	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs144960271-T	NR	1E-6		1.14	[NR]	Illumina [7158791] (imputed)	N
900	chr22	41393519	41393520	rs960596	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	22q13.2	RBX1	rs960596-C	0.660681	1E-9		0.0134522	[0.0091-0.0178] unit decrease	Affymetrix [NR] (imputed)	N
900	chr22	41393519	41393520	rs960596	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	22q13.2	NR	rs960596-T	0.339588	2E-9		0.012414	[0.0083-0.0165] unit increase	Affymetrix [16668957] (imputed)	N
900	chr22	41396352	41396353	rs7287939	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	22q13.2	RBX1	rs7287939-?	NR	4E-7	(Latino)	2.19	[1.89-2.50]	Affymetrix, Illumina [NR] (imputed)	N
900	chr22	41404938	41404939	rs743002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q13.2		rs743002-C	0.066213	5E-42		0.06062438	[0.052-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr22	41404938	41404939	rs743002	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	22q13.2		rs743002-C	0.066186	1E-17		0.038228482	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
900	chr22	41404938	41404939	rs743002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs743002-C	0.0632218	1E-47				Affymetrix, Illumina [19872809] (imputed)	N
900	chr22	41404938	41404939	rs743002	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q13.2	NR	rs743002-C	0.065649	3E-48		0.058857	[0.051-0.067] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
900	chr22	41404938	41404939	rs743002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	22q13.2	intergenic	rs743002-C	0.0655	4E-10		0.04547389	[0.031-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr22	41404938	41404939	rs743002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	22q13.2	intergenic	rs743002-C	0.0655	4E-12		0.05045479	[0.036-0.065] unit increase	Affymetrix [~ 2500000] (imputed)	N
900	chr22	41404938	41404939	rs743002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	22q13.2	intergenic	rs743002-C	0.0656	2E-20		0.06691602	[0.053-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr22	41404938	41404939	rs743002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	22q13.2	intergenic	rs743002-C	0.0656	4E-19		0.064907	[0.051-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr22	41404938	41404939	rs743002	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	22q13.2	intergenic	rs743002-C	0.0656	9E-18		0.06225835	[0.048-0.076] unit decrease	Affymetrix [~ 2500000] (imputed)	N
900	chr22	41404969	41404970	rs761702	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	22q13.2		rs761702-A	0.0648300000000001	2E-16		0.0371101	[0.028-0.046] unit increase	Affymetrix [93095623] (imputed)	N
900	chr22	41404969	41404970	rs761702	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs761702-A	0.0619575	2E-15				Affymetrix, Illumina [19905671] (imputed)	N
900	chr22	41405752	41405753	rs34780507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q13.2		rs34780507-G	0.06638	2E-37		0.056946266	[0.048-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
900	chr22	41405752	41405753	rs34780507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q13.2	NR	rs34780507-G	0.065683	3E-17		0.03512	[0.027-0.043] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
900	chr22	41405752	41405753	rs34780507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.2		rs34780507-?	NR	5E-37				NR [~ 8900000] (imputed)	N
900	chr22	41409428	41409429	rs9611454	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	22q13.2	NR	rs9611454-C	0.648075	3E-19		0.0183021	[0.014-0.022] unit increase	NR [NR]	N
900	chr22	41416180	41416181	rs8139770	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs8139770-T	NR	1E-10		6.411	z score increase	Affymetrix [10847151] (imputed)	N
900	chr22	41416556	41416557	rs6519240	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q13.2	CACNA1I, FAM83F, TNRC6B, SGSM3, MKL1, MCHR1, SLC25A17, ST13, XPNPEP3, RBX1, EP300, L3MBTL2, CHADL, RANGAP1, ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, CSDC2, PMM1, DESI1, XRCC6, NHP2L1, MEI1, bK250D10.C22.8, CCDC134, SREBF2, CENPM, 3-Sep, WBP2NL, NAGA, FAM109B, NDUFA6, SMDT1, CYP2D6, CYP2D7P1, TCF20, NFAM1	rs6519240-?		2E-27				Affymetrix, Illumina [NR] (imputed)	N
900	chr22	41418153	41418154	rs926914	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	22q13.2	NR	rs926914-T	0.3022	7E-10		0.075081654	[0.051-0.099] unit increase	NR [NR]	N
900	chr22	41418296	41418297	rs9611460	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	22q13.2	NR	rs9611460-?		6E-10				NR [520857]	N
900	chr22	41418296	41418297	rs9611460	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	22q13.2	NR	rs9611460-?		2E-8				NR [11140414]	N
900	chr22	41418296	41418297	rs9611460	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	22q13.2	NR	rs9611460-T	NR	2E-8		5.596	z score decrease	Affymetrix [10847151] (imputed)	N
901	chr22	41420678	41420679	rs75723348	30940813	Kranzler HR	2019-04-02	Nat Commun	Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations.	Alcohol use disorder (consumption score)	200,680 European American individuals, 56,495 African American individuals, 14,112 Latino American individuals, 1,366 East Asian American individuals, 189 South Asian American individuals	NA	22q13.2	RBX1	rs75723348-T	0.736	1E-8		5.55	NR z score increase	Affymetrix [up to 12500000] (imputed)	N
901	chr22	41431341	41431342	rs4820425	22936669	Julia A	2012-08-30	Gut	A genome-wide association study on a southern European population identifies a new Crohn's disease susceptibility locus at RBX1-EP300.	Crohn's disease	1,277 European ancestry cases, 1,488 European ancestry controls	1,365 European ancestry cases, 1,396 European ancestry controls	22q13.2	RBX1, EP300	rs4820425-A	0.24	3E-8		1.27	[1.17-1.38]	Illumina [508934]	N
901	chr22	41432543	41432544	rs8141699	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q13.2	MIR1281	rs8141699-T	0.9414	3E-11		0.3017	[0.21-0.39] mmHg decrease	Affymetrix [NR] (imputed)	N
901	chr22	41434157	41434158	rs73174657	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q13.2		rs73174657-?	NR	7E-8				NR [~ 8900000] (imputed)	N
901	chr22	41439303	41439304	rs12484971	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	22q13.2	NR	rs12484971-T	NR	2E-10		0.01673	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
901	chr22	41450867	41450868	rs62238685	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.2	NR	rs62238685-A	0.0874751	2E-9		0.06704663	[0.045-0.089] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
901	chr22	41457458	41457459	rs141447235	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs141447235-C	0.064	2E-9	(EA)	0.0772	[0.052-0.102] unit increase	Illumina [~ 11800000] (imputed)	N
901	chr22	41458783	41458784	rs9611486	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	22q13.2	WBP2NL	rs9611486-C	0.289902	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
901	chr22	41461513	41461514	rs765051254	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	22q13.2	RANGAP1	rs765051254-?	NR	7E-11		0.0092652	[0.0065-0.012] unit decrease	Affymetrix [NR] (imputed)	N
901	chr22	41461835	41461836	rs4821995	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs4821995-A	NR	3E-8		5.565	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
901	chr22	41461835	41461836	rs4821995	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	NR	rs4821995-?	NR	2E-6		4.783	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
901	chr22	41461864	41461865	rs5758209	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	22q13.2	ST13	rs5758209-T	0.491215	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
901	chr22	41469876	41469877	rs12485034	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs12485034-?	NR	7E-9				NR [2625067]	N
901	chr22	41470000	41470001	rs4821999	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q13.2		rs4821999-G	NR	4E-8		0.0108	[0.0069-0.0147] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
901	chr22	41474076	41474077	rs9607771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	22q13.2	MCHR1	rs9607771-A	0.284442	2E-12		7.03	z score increase	NR [10847151] (imputed)	N
901	chr22	41474076	41474077	rs9607771	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	22q13.2	NR	rs9607771-A	0.284442	5E-8		5.462	unit increase	NR [10847151] (imputed)	N
901	chr22	41478481	41478482	rs9623320	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	22q13.2	NR	rs9623320-A	0.304	4E-8		1.0362694	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
901	chr22	41484926	41484927	rs5751039	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.2	Intergenic	rs5751039-C	0.6892	3E-11	(MTAG)	0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
901	chr22	41487217	41487218	rs5995992	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	22q13.2	NR	rs5995992-C	0.2845	3E-35		1.0309278	[1.03-1.04]	NR [8098588] (imputed)	N
901	chr22	41489919	41489920	rs5758223	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q13.2	EP300	rs5758223-A	0.7167	4E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
901	chr22	41496799	41496800	rs11090039	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	22q13.2	NR	rs11090039-A	0.2871	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
901	chr22	41496799	41496800	rs11090039	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	22q13.2	XPNPEP3	rs11090039-A	0.283315	2E-10		6.38	z score increase	NR [10847151] (imputed)	N
901	chr22	41512457	41512458	rs112624735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.2	EP300	rs112624735-T	0.344494	2E-16		0.019119866	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
901	chr22	41547153	41547154	rs75843224	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	22q13.2	EP300	rs75843224-A	0.054	6E-14		0.0196	[0.015-0.025] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
902	chr22	41553916	41553917	rs117018441	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	22q13.2	CHADL	rs117018441-T	NR	2E-25	(recessive)	5.89	[4.22-8.22]	Affymetrix, Illumina [11554240] (imputed)	N
902	chr22	41570566	41570567	rs77339131	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	22q13.2	L3MBTL2	rs77339131-A	0.0598	3E-16		0.033474192	[0.025-0.041] unit decrease	Illumina [9339358] (imputed)	N
902	chr22	41580712	41580713	rs4408817	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	22q13.2	L3MBTL2	rs4408817-T	0.628	5E-9		0.0071	[0.0047-0.0095] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
902	chr22	41587555	41587556	rs9607782	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	22q13.2	NR	rs9607782-?		5E-9				NR [8377093]	N
902	chr22	41587555	41587556	rs9607782	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	22q13.2	NR	rs9607782-?	NR	2E-11		1.08405	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
902	chr22	41587555	41587556	rs9607782	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.2	ENSG00000231993	rs9607782-?	NR	9E-11		0.015108941	[0.011-0.02] unit decrease	NR [7306098]	N
902	chr22	41587555	41587556	rs9607782	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	22q13.2	NR	rs9607782-?	NR	4E-13				Illumina [up to 5582932] (imputed)	N
902	chr22	41587555	41587556	rs9607782	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	LOC646927	rs9607782-A	NR	4E-13		1.093	[1.07-1.12]	Illumina [6627481] (imputed)	N
902	chr22	41587555	41587556	rs9607782	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	LOC646927	rs9607782-A	NR	4E-12	(EA)	1.0928	[1.07-1.12]	Illumina [6627481] (imputed)	N
902	chr22	41587555	41587556	rs9607782	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	22q13.2	CHADL, EP300, EP300-AS1, L3MBTL2, MIR1281, MIR6889, RANGAP1, ZC3H7B	rs9607782-?	NR	6E-13		1.0845987	[1.06-1.11]	Illumina [8000000] (imputed)	N
902	chr22	41587555	41587556	rs9607782	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	22q13.2	CSDC2, EP300, MCHR1, POLR3H, RANGAP1, XPNPEP3, ZC3H7B	rs9607782-A	NR	1E-12		1.09	[1.07-1.11]	Affymetrix, Illumina [up to 5107227] (imputed)	N
902	chr22	41587555	41587556	rs9607782	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	22q13.2	CHADL, DNAJB7, EP300, EP300-AS1, L3MBTL2, MCHR1, MIR1281, MIR4766, MIR6889, RANGAP1, RBX1, SLC25A17, SNORD140, ST13, TEF, TOB2, XPNPEP3, ZC3H7B	rs9607782-A		9E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [NR]	N
902	chr22	41587555	41587556	rs9607782	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs9607782-A	NR	2E-11		1.09	[NR]	Illumina [7158791] (imputed)	N
902	chr22	41587555	41587556	rs9607782	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	22q13.2	CHADL, EP300, L3MBTL2, RANGAP1	rs9607782-A	0.232	2E-11		1.087	[1.060-1.113]	Affymetrix, Illumina [9005918] (imputed)	N
902	chr22	41592676	41592677	rs2092563	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	22q13.2	RP1, 85F18.5	rs2092563-G	0.3032	6E-42		0.033832505	[0.028-0.039] unit decrease	NR [9417325] (imputed)	N
902	chr22	41593580	41593581	rs11913442	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q13.2	NR	rs11913442-C	0.3799	8E-10		0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
902	chr22	41593872	41593873	rs5751061	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q13.2	NR	rs5751061-G	0.6144	3E-8		0.0261	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
902	chr22	41598932	41598933	rs136402	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	22q13.2	NR	rs136402-A	0.290958	2E-12		7.02	z score increase	NR [10847151] (imputed)	N
902	chr22	41613187	41613188	rs9611519	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs9611519-T	NR	1E-18		8.839	z score increase	Affymetrix [10847151] (imputed)	N
902	chr22	41613187	41613188	rs9611519	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	22q13.2	NR	rs9611519-T	0.2845	1E-10		0.035989	[0.025-0.047] unit increase	Illumina [18485882] (imputed)	N
902	chr22	41613187	41613188	rs9611519	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Neuroticism	122,867 European ancestry individuals	137,994 European ancestry individuals	22q13.2	L3MBTL2, CHADL	rs9611519-T	0.31	9E-9		0.053	[0.020-0.086] unit increase UK Biobank replication cohort	Affymetrix, Illumina [6337541] (imputed)	N
902	chr22	41613302	41613303	rs9611520	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q13.2		rs9611520-?	NR	3E-8				NR [NR]	N
902	chr22	41615375	41615376	rs2273085	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	22q13.2	L3MBTL2	rs2273085-C	0.3082	1E-37		0.032241877	[0.027-0.038] unit decrease	NR [9417325] (imputed)	N
902	chr22	41615375	41615376	rs2273085	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism (MTAG)	168,105 European ancestry individuals	NA	22q13.2	NR	rs2273085-T	0.291	4E-9		0.0185	[0.012-0.025] unit increase	Illumina [NR] (imputed)	N
902	chr22	41615375	41615376	rs2273085	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Neuroticism	168,105 European ancestry individuals	NA	22q13.2	NR	rs2273085-T	0.291	4E-6		0.0183	[0.01-0.026] unit increase	Illumina [NR] (imputed)	N
902	chr22	41615375	41615376	rs2273085	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	22q13.2	intergenic	rs2273085-T	0.29112	1E-17		8.547	z score increase	Illumina [18485882] (imputed)	N
902	chr22	41615375	41615376	rs2273085	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	22q13.2	NR	rs2273085-T	0.31	5E-7		0.019381903	[0.012-0.027] unit increase	Affymetrix [up to 6544775] (imputed)	N
902	chr22	41617025	41617026	rs79543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs79543-T	0.335456	5E-20				Affymetrix, Illumina [22063850] (imputed)	N
902	chr22	41617025	41617026	rs79543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.2	NR	rs79543-T	0.341962	1E-19		0.01808	[0.014-0.022] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
902	chr22	41617317	41617318	rs139472	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.2		rs139472-?	NR	1E-15				NR [~ 8900000] (imputed)	N
902	chr22	41617556	41617557	rs140614180	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs140614180-C	0.0176	6E-8	(EA)	0.1449	[0.092-0.197] unit increase	Illumina [~ 11800000] (imputed)	N
902	chr22	41617896	41617897	rs5758265	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q13.2		rs5758265-?	NR	3E-8				NR [NR]	N
902	chr22	41617896	41617897	rs5758265	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	22q13.2	NR	rs5758265-?		8E-10				NR [8377093]	N
902	chr22	41617896	41617897	rs5758265	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	22q13.2	L3MBTL2, CHADL	rs5758265-?		5E-14				NR [6786993] (imputed)	N
902	chr22	41617896	41617897	rs5758265	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	22q13.2	L3MBTL2, EP300-AS1, CHADL	rs5758265-A	0.28	8E-9		1.03	[1.02-1.04]	NR [9622763] (imputed)	N
902	chr22	41617896	41617897	rs5758265	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	22q13.2	NR	rs5758265-G	0.7131	1E-9		0.0143	[0.0096-0.019] unit decrease	Illumina [NR] (imputed)	N
902	chr22	41618879	41618880	rs5758266	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	22q13.2		rs5758266-?	NR	4E-9				NR [NR]	N
902	chr22	41621713	41621714	rs2179744	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	22q13.2	NR	rs2179744-A	NR	4E-12		1.03	[1.02-1.04]	NR [NR] (imputed)	N
902	chr22	41621713	41621714	rs2179744	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	22q13.2	NR	rs2179744-A	0.291602605158042	7E-15		0.007863273	[0.0059-0.0098] unit increase	NR [NR]	N
902	chr22	41621713	41621714	rs2179744	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	22q13.2	NR	rs2179744-A	0.291602605158042	4E-10		0.009454516	[0.0065-0.0124] unit increase	NR [NR]	N
902	chr22	41621713	41621714	rs2179744	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	22q13.2	NR	rs2179744-A	0.291602605158042	2E-14		0.012594421	[0.0094-0.0158] unit increase	NR [NR]	N
902	chr22	41621713	41621714	rs2179744	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	22q13.2	NR	rs2179744-A	0.291602605158042	3E-14		0.008006756	[0.0059-0.0101] unit increase	NR [NR]	N
902	chr22	41621713	41621714	rs2179744	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	22q13.2	NR	rs2179744-G	0.7158	2E-8		0.0147	[0.0096-0.0198] unit decrease	Illumina [NR] (imputed)	N
902	chr22	41621713	41621714	rs2179744	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	22q13.2	L3MBTL2	rs2179744-G	0.718312	6E-11		0.0354	[0.022-0.049] unit decrease	Illumina [1220000] (imputed)	N
902	chr22	41622418	41622419	rs5758268	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	22q13.2	NR	rs5758268-A	0.288852	3E-10		6.32	z score decrease	NR [10847151] (imputed)	N
902	chr22	41627385	41627386	rs139481	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.2	Intergenic	rs139481-T	0.3189	2E-9	(MTAG)	0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
902	chr22	41627526	41627527	rs139483	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	22q13.2		rs139483-?	NR	5E-8				Affymetrix [NR] (imputed)	N
902	chr22	41627923	41627924	rs9611522	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	22q13.2	CHADL	rs9611522-T	0.258228	2E-8		5.638	unit increase	NR [10847151] (imputed)	N
902	chr22	41632078	41632079	rs139493	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	22q13.2		rs139493-?	NR	3E-9				NR [7857346] (imputed)	N
902	chr22	41634087	41634087	rs532464664	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	22q13.2	NR	rs532464664-CGCGCGCC	NR	2E-25		5.89	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
902	chr22	41634087	41634087	rs532464664	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Knee osteoarthritis	23,877 European ancestry cases, 562,153 European ancestry controls	NA	22q13.2	NR	rs532464664-CGCGCGCC	NR	8E-8		2.78	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
902	chr22	41634087	41634087	rs532464664	28319091	Styrkarsdottir U	2017-03-20	Nat Genet	Whole-genome sequencing identifies rare genotypes in COMP and CHADL associated with high risk of hip osteoarthritis.	Osteoarthritis (with total hip replacement)	3,110 Icelandic ancestry cases, 1,547 non-array typed, familial imputed Icelandic ancestry cases, 99,911 Icelandic ancestry controls, 107,603 non-array typed, familial imputed Icelandic ancestry controls	NA	22q13.2	CHADL	rs532464664-CGCGCGCC	0.0392	5E-18	(recessive)	7.71	[4.86-12.25]	Illumina [up to 31600000] (imputed)	N
902	chr22	41637118	41637119	rs4820434	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	22q13.2	SLC25A17	rs4820434-T	0.314394	6E-9		5.81	z score increase	NR [~ 10847151] (imputed)	N
902	chr22	41639727	41639728	rs139496	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	22q13.2		rs139496-G	NR	1E-13		0.068	[0.05-0.086] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
902	chr22	41639727	41639728	rs139496	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	22q13.2	RANGAP1	rs139496-T	0.286408	5E-12		0.06952941	[0.05-0.089] unit decrease	Affymetrix [7288503] (imputed)	N
902	chr22	41640097	41640098	rs139497	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	22q13.2	NR	rs139497-T	0.688502	9E-9		0.0420229	[0.028-0.057] unit decrease	Affymetrix [17914406] (imputed)	N
902	chr22	41640097	41640098	rs139497	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.2	RANGAP1	rs139497-C	0.312019	4E-23		0.0199902	[0.016-0.024] unit decrease	NR [13737936] (imputed)	N
902	chr22	41640097	41640098	rs139497	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.2		rs139497-?	NR	3E-24				NR [~ 8900000] (imputed)	N
902	chr22	41640097	41640098	rs139497	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.2		rs139497-?	NR	2E-21		0.0194639	[0.015-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
902	chr22	41642211	41642212	rs3171692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	22q13.2	NR	rs3171692-T	0.329472	2E-8		5.66	z score increase	NR [10847151] (imputed)	N
902	chr22	41644233	41644234	rs139498	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	22q13.2	RANGAP1	rs139498-C	0.447	5E-11		0.012839883	[0.009-0.0167] unit increase	Illumina [9339358] (imputed)	N
902	chr22	41644427	41644428	rs9611527	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	22q13.2	CHADL, RANGAP1	rs9611527-G	0.664286	1E-15		0.019792	[0.015-0.025] unit increase	Affymetrix [19400838] (imputed)	N
902	chr22	41660644	41660645	rs2235851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q13.2	RANGAP1	rs2235851-A	NR	3E-8		0.0211807	[0.014-0.029] unit increase	Affymetrix [319769] (imputed)	N
902	chr22	41660644	41660645	rs2235851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q13.2	RANGAP1	rs2235851-A	NR	3E-8		0.0210443	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
902	chr22	41661153	41661154	rs2235852	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	22q13.2	intergenic	rs2235852-T	0.3267	4E-6		0.0577	[0.033-0.082] unit increase	Illumina [2400000] (imputed)	N
902	chr22	41664538	41664539	rs5758274	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	22q13.2	RANGAP1	rs5758274-A	0.6674	2E-9		0.0103	[0.007-0.0136] unit increase	Affymetrix [~ 7740000] (imputed)	N
903	chr22	41694387	41694388	rs9607791	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs9607791-A	NR	7E-7		1.17	[NR]	Illumina [7158791] (imputed)	N
903	chr22	41701455	41701456	rs138363830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	22q13.2	ZC3H7B	rs138363830-G	NR	2E-8		0.0386427	[0.025-0.052] unit increase	Affymetrix [319769] (imputed)	N
903	chr22	41701455	41701456	rs138363830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	22q13.2	ZC3H7B	rs138363830-G	NR	8E-9		0.0395282	[0.026-0.053] unit increase	Affymetrix [319769] (imputed)	N
903	chr22	41703803	41703804	rs7289932	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs7289932-A	NR	2E-10		6.376	z score increase	Affymetrix [10847151] (imputed)	N
903	chr22	41704871	41704872	rs34011394	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	22q13.2	NR	rs34011394-T	NR	2E-8		0.01354	[0.0088-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
903	chr22	41713110	41713111	rs9611555	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	22q13.2	ZC3H7B	rs9611555-G	NR	9E-10		0.010643	[0.0072-0.014] unit increase	Affymetrix [18485882] (imputed)	N
903	chr22	41719247	41719248	rs73176670	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs73176670-T	0.0618	1E-8	(EA)	0.0751	[0.049-0.101] unit increase	Illumina [~ 11800000] (imputed)	N
903	chr22	41719468	41719469	rs6002333	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	22q13.2	ZC3H7B	rs6002333-T	0.2469	2E-9		0.02478978	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr22	41720696	41720697	rs5758297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	22q13.2	ZC3H7B	rs5758297-G	0.2493	5E-10		0.02563298	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr22	41720696	41720697	rs5758297	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	22q13.2	ZC3H7B	rs5758297-G	0.2492	5E-11		0.02727251	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr22	41720727	41720728	rs5751077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	22q13.2	ZC3H7B	rs5751077-C	0.2492	1E-12		0.02943037	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
903	chr22	41723112	41723113	rs62238180	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q13.2		rs62238180-A	NR	9E-10		0.0246	[0.017-0.032] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
903	chr22	41723112	41723113	rs62238180	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.2	NR	rs62238180-G	0.0795229	5E-10		0.07210735	[0.049-0.095] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
903	chr22	41723112	41723113	rs62238180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs62238180-A	0.0846791	4E-12				Affymetrix, Illumina [24588908] (imputed)	N
903	chr22	41736089	41736090	rs9607793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.2		rs9607793-?	NR	4E-8				NR [~ 8900000] (imputed)	N
903	chr22	41742282	41742283	rs12170305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.2		rs12170305-?	NR	8E-9				NR [~ 8900000] (imputed)	N
903	chr22	41744021	41744022	rs761366	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs761366-C	NR	3E-11		6.649	z score decrease	Affymetrix [10847151] (imputed)	N
903	chr22	41747814	41747819	rs71803158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q13.2		rs71803158-C	NR	3E-16		0.0229	[0.017-0.028] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
903	chr22	41750621	41750622	rs9611560	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	22q13.2	ZC3H7B	rs9611560-T	0.261198	8E-9		0.00930858	[0.0061-0.0125] unit increase	Affymetrix [12370749]	N
903	chr22	41752746	41752747	rs12484074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q13.2	ZC3H7B	rs12484074-A	0.225953	2E-29		0.029892843	[0.025-0.035] unit increase	Affymetrix [93095623] (imputed)	N
903	chr22	41752746	41752747	rs12484074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs12484074-A	0.205237	3E-37				Affymetrix, Illumina [23472807] (imputed)	N
903	chr22	41752746	41752747	rs12484074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	22q13.2	NR	rs12484074-A	0.227761	3E-39		0.030051	[0.026-0.035] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
903	chr22	41752943	41752944	rs1109151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q13.2	ZC3H7B	rs1109151-G	0.238313	2E-21		0.024836961	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
903	chr22	41752943	41752944	rs1109151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q13.2	ZC3H7B	rs1109151-G	0.238326	6E-22		0.025097236	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
903	chr22	41752943	41752944	rs1109151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.2		rs1109151-?	NR	2E-22				NR [~ 8900000] (imputed)	N
903	chr22	41753058	41753059	rs28638318	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	22q13.2	NR	rs28638318-A	0.23345	7E-9		0.047442	[0.032-0.063] unit decrease	Affymetrix [17914406] (imputed)	N
903	chr22	41753602	41753603	rs11090045	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	22q13.2	ZC3H7B	rs11090045-G		1E-8		1.029	[NR]	Affymetrix [up to 79000000] (imputed)	N
903	chr22	41753602	41753603	rs11090045	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	22q13.2	NR	rs11090045-A	0.3031	1E-11		0.01321	[0.0094-0.017] unit increase	NR [8968716] (imputed)	N
903	chr22	41753602	41753603	rs11090045	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	22q13.2	L3MBTL2, CHADL, RANGAP1, ZC3H7B, TEF, PHF5A	rs11090045-?	NR	3E-8		0.0149984	[0.0097-0.0203] unit increase	Affymetrix [25921788] (imputed)	N
903	chr22	41753602	41753603	rs11090045	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	22q13.2	NR	rs11090045-A	NR	6E-9		0.01507	NR unit increase	NR [7259579]	N
903	chr22	41753602	41753603	rs11090045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	22q13.2		rs11090045-?	NR	3E-12				NR [~ 8900000] (imputed)	N
903	chr22	41753602	41753603	rs11090045	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.2	Intergenic	rs11090045-A	0.3077	1E-32	(MTAG)	0.0231	[0.019-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
903	chr22	41753602	41753603	rs11090045	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.2	Intergenic	rs11090045-G	0.6923	1E-32		0.0251	[0.021-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	22q13.2	NR	rs11090045-A	NR	1E-11		0.01788	[0.013-0.023] unit increase	Affymetrix [10847151] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	22q13.2	NR	rs11090045-A	NR	3E-18		8.71	z score increase	Affymetrix [10847151] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	22q13.2	SLC25A17	rs11090045-A	0.30231	4E-14		7.56	z score increase	NR [10847151] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	22q13.2	PHF5A	rs11090045-A	0.30231	2E-10		6.38	z score increase	NR [10847151] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	22q13.2	SLC25A17	rs11090045-A	0.30231	3E-8		5.55	z score increase	NR [10847151] (imputed)	N
903	chr22	41753602	41753603	rs11090045	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	22q13.2	ACO2, C22orf46, CHADL, CSDC2, DESI1, EP300, L3MBTL2, LOC100506562, MEI1, NHP2L1, PHF5A, PMM1, POLR3H, RANGAP1, RBX1, TEF, TOB2, XRCC6, ZC3H7B	rs11090045-A	0.30231	3E-18		8.723	z score increase	Illumina [18485882] (imputed)	N
903	chr22	41757222	41757223	rs6002351	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	22q13.2		rs6002351-C	0.772	1E-12				Affymetrix [10369434] (imputed)	N
903	chr22	41757646	41757647	rs4822024	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	22q13.2	TOB2	rs4822024-G	0.79	7E-10		1.28	[NR]	Illumina [495821]	N
903	chr22	41759125	41759125	rs10678780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	22q13.2	TEF	rs10678780-CCT	0.228156	3E-27		0.028617227	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
903	chr22	41759374	41759375	rs5758311	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	22q13.2	ZC3H7B	rs5758311-T	0.228031	9E-9		0.062579796	[0.041-0.084] unit decrease	Affymetrix [7288503] (imputed)	N
903	chr22	41760171	41760172	rs9611562	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	22q13.2	TEF	rs9611562-G	0.227157	2E-23		0.026586426	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr22	41761289	41761290	rs4820437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	22q13.2		rs4820437-C	NR	7E-9		0.0591	[0.039-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
903	chr22	41761289	41761290	rs4820437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	22q13.2		rs4820437-?	NR	2E-8				NR [~ 8900000] (imputed)	N
903	chr22	41767485	41767486	rs9611565	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	22q13.2	ZC3H7B, TEF	rs9611565-T	0.7611	3E-15		1.2637432	[1.19-1.33]	Illumina [8966411] (imputed)	N
903	chr22	41768624	41768625	rs9611566	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	22q13.2		rs9611566-C	0.774	2E-20				Affymetrix [10369434] (imputed)	N
903	chr22	41768861	41768862	rs5751086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	22q13.2	NR	rs5751086-T	NR	2E-21		0.0258	[0.021-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
903	chr22	41768861	41768862	rs5751086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	22q13.2		rs5751086-?	NR	1E-9				NR [~ 8900000] (imputed)	N
903	chr22	41769753	41769754	rs9611567	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	22q13.2	PHF5A	rs9611567-A	0.241494	3E-8		5.52	z score decrease	NR [10847151] (imputed)	N
903	chr22	41770055	41770056	rs113795690	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs113795690-A	NR	4E-11		6.596	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
903	chr22	41774313	41774314	rs113731242	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	6,148 African American individuals	NA	22q13.2	NR	rs113731242-A	0.9411	1E-8		1.0208	[0.67-1.37] unit increase	Affymetrix, Illumina [12989706] (imputed)	N
903	chr22	41777240	41777241	rs2234052	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	22q13.2	TEF	rs2234052-G	0.2241	2E-9		0.02548559	[0.017-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
903	chr22	41787675	41787676	rs9611573	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	22q13.2	NR	rs9611573-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
903	chr22	41787949	41787950	rs5758324	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Asthma (time to event)	25,240 British ancestry cases, 257,631 British ancestry controls	NA	22q13.2	TEF	rs5758324-?	NR	2E-8				NR [~ 24000000] (imputed)	N
903	chr22	41790178	41790179	rs17365991	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Cognitive impairment level	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	22q13.2		rs17365991-A	NR	5E-6		4.597	[2.63-6.56] unit increase	NR [534934]	N
903	chr22	41791535	41791536	rs2073167	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	22q13.2	TEF	rs2073167-A	0.52	1E-6		1.06	[1.03-1.08]	Illumina [161311]	N
903	chr22	41797546	41797547	rs132901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	22q13.2		rs132901-T	NR	2E-9		0.0675	[0.045-0.09] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
903	chr22	41798519	41798520	rs202645	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	22q13.2		rs202645-A	0.203	4E-9		0.015	[0.011-0.019] unit decrease	Affymetrix [up to 90000000] (imputed)	N
903	chr22	41798895	41798896	rs132904	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	22q13.2	TEF	rs132904-C	0.7796	1E-7		0.0097	[0.0062-0.0132] unit increase	Affymetrix [~ 7740000] (imputed)	N
903	chr22	41799766	41799767	rs132906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.2	TEF	rs132906-C	0.775436	7E-11		0.017534725	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
903	chr22	41804159	41804160	rs132911	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	22q13.2	NR	rs132911-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
903	chr22	41804715	41804716	rs28489620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	22q13.2		rs28489620-A	NR	3E-9		0.0153	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
903	chr22	41804715	41804716	rs28489620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.2		rs28489620-?	NR	4E-12				NR [~ 8900000] (imputed)	N
903	chr22	41809902	41809903	rs132919	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	22q13.2	TEF, ZC3H7B, SREBF2	rs132919-G	0.22639	2E-10		0.01708	[0.012-0.022] unit decrease	Affymetrix [19400838] (imputed)	N
904	chr22	41815290	41815290	rs35110965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	22q13.2		rs35110965-CA	NR	2E-10		0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
904	chr22	41816651	41816652	rs5758343	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	22q13.2	NR	rs5758343-T	0.7959	2E-9		0.015397981	[0.01-0.02] unit increase	Affymetrix [10613246] (imputed)	N
904	chr22	41816651	41816652	rs5758343	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	22q13.2	NR	rs5758343-T	0.785	6E-10		0.013365218	[0.0091-0.0176] unit increase	Affymetrix [NR] (imputed)	N
904	chr22	41816651	41816652	rs5758343	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	22q13.2	TEF-, TOB2	rs5758343-A	0.22	5E-14		1.048	[1.04-1.06]	Affymetrix, Illumina [8307659] (imputed)	N
904	chr22	41819959	41819960	rs12165508	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	22q13.2	TOB2	rs12165508-T	0.2045	1E-8				Affymetrix [15688218] (imputed)	N
904	chr22	41819959	41819960	rs12165508	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	22q13.2	NR	rs12165508-T	0.2045	2E-9		1.041	[1.028-1.054]	Affymetrix [15688218] (imputed)	N
904	chr22	41849974	41849975	rs202629	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	22q13.2	NR	rs202629-T		3E-6		0.056	[0.033-0.079] unit increase	Illumina [at least 4916924] (imputed)	N
904	chr22	41852478	41852479	rs202636	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	22q13.2	PHF5A	rs202636-T	0.204026	1E-12		1.0545822	1.03925377661519-1.07013686775782]	NR [9572556] (imputed)	N
904	chr22	41853927	41853928	rs202637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q13.2		rs202637-G	NR	6E-20		0.0204	[0.016-0.025] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
904	chr22	41853927	41853928	rs202637	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q13.2		rs202637-A	0.183	2E-12				Affymetrix [10369434] (imputed)	N
904	chr22	41853927	41853928	rs202637	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.2	PHF5A	rs202637-A	0.1835	1E-15		0.0197	[0.015-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
904	chr22	41853927	41853928	rs202637	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	22q13.2	ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, CSDC2, PMM1, DESI1, XRCC6, NHP2L1, C22orf46, MEI1, CCDC134	rs202637-?	NR	4E-8		0.0174499	[0.011-0.024] unit decrease	Affymetrix [25921788] (imputed)	N
904	chr22	41854445	41854446	rs9607805	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	22q13.2	PHF5A	rs9607805-T	0.7	6E-9		0.42	[0.28-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
904	chr22	41854445	41854446	rs9607805	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	22q13.2	PHF5A	rs9607805-T	0.7306	1E-8		0.4352	[0.29-0.58] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
904	chr22	41854445	41854446	rs9607805	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	22q13.2	NR	rs9607805-T	0.725	1E-11		0.029540751	[0.021-0.038] unit increase	NR [~ 10000000] (imputed)	N
904	chr22	41854445	41854446	rs9607805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.2	Intergenic	rs9607805-T	0.7217	5E-20	(MTAG)	0.0169	[0.013-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
904	chr22	41854445	41854446	rs9607805	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	22q13.2	NR	rs9607805-T	0.287107	1E-10		6.41	z score decrease	NR [10847151] (imputed)	N
904	chr22	41854445	41854446	rs9607805	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	22q13.2	intergenic	rs9607805-T	0.71289	7E-13		7.175	z score decrease	Illumina [18485882] (imputed)	N
904	chr22	41855911	41855912	rs5758364	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	22q13.2	PHF5A	rs5758364-A	0.217	3E-6		1.043	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
904	chr22	41855911	41855912	rs5758364	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	22q13.2	PHF5A	rs5758364-A	NR	1E-10		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
904	chr22	41859660	41859661	rs6002386	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	22q13.2	Intergenic	rs6002386-A	0.2118	3E-16		0.0227	[0.017-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
904	chr22	41864189	41864190	rs9611597	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	22q13.2	NR	rs9611597-A		5E-12		0.1	[0.08-0.12] unit increase	NR [NR]	N
904	chr22	41864189	41864190	rs9611597	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q13.2	PHF5A	rs9611597-A	0.8371	3E-12		1.0381082		Affymetrix [11880941] (imputed)	N
904	chr22	41864189	41864190	rs9611597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.2		rs9611597-A	0.835	2E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
904	chr22	41867105	41867105	rs3045391	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	22q13.2		rs3045391-T	0.2	2E-9				NR [NR] (imputed)	N
904	chr22	41867105	41867105	rs3045391	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	22q13.2		rs3045391-T	0.2	3E-15		0.015	% increase	NR [NR] (imputed)	N
904	chr22	41867376	41867377	rs727563	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.2	TEF, NHP2L1, PMM1, L3MBTL2, CHADL	rs727563-G	0.2027	3E-6	(EA)	1.0581502	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
904	chr22	41867376	41867377	rs727563	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	22q13.2	TEF, NHP2L1, PMM1, L3MBTL2, CHADL	rs727563-G	0.2027	2E-10	(EA)	1.0965022	[1.07-1.12]	Affymetrix, Illumina [~ 9000000] (imputed)	N
904	chr22	41884953	41884954	rs738140	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q13.2	ACO2	rs738140-A	0.689843	3E-9		0.00885996	[0.0059-0.0118] unit increase	Affymetrix [12370749]	N
904	chr22	41897986	41897987	rs117078955	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs117078955-T	0.0178	1E-6	(EA)	0.1235	[0.074-0.173] unit increase	Illumina [~ 11800000] (imputed)	N
904	chr22	41908404	41908405	rs9611602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	22q13.2		rs9611602-?	NR	4E-10				NR [~ 8900000] (imputed)	N
904	chr22	41918652	41918653	rs201267172	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	22q13.2	ACO2	rs201267172-G	0.19	4E-12				NR [> 9500000] (imputed)	N
904	chr22	41925767	41925767	rs371328828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.2	NR	rs371328828-I	0.210354	2E-11		0.017124	[0.012-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
904	chr22	41941242	41941243	rs9607812	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	22q13.2	POLR3H	rs9607812-G	0.8113	7E-9		0.0075	[0.005-0.01] unit increase	Affymetrix [~ 7740000] (imputed)	N
904	chr22	41941242	41941243	rs9607812	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	22q13.2	POLR3H	rs9607812-A	0.187	7E-10		0.02	[0.014-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
904	chr22	41941242	41941243	rs9607812	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	22q13.2	CSDC2	rs9607812-A	0.1878	5E-9		0.016680405	[0.011-0.022] unit decrease	Affymetrix [11514936] (imputed)	N
904	chr22	41942903	41942904	rs73178638	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	22q13.2	NR	rs73178638-C	0.199	1E-14		0.0152026	[0.011-0.019] unit decrease	NR [9732723] (imputed)	N
905	chr22	41946518	41946519	rs9607814	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	22q13.2	NR	rs9607814-A	0.2	3E-10		0.0105989	[0.0073-0.0139] unit decrease	NR [~ 9732723] (imputed)	N
905	chr22	41946518	41946519	rs9607814	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	22q13.2	NR	rs9607814-A	0.2	4E-8		0.010181001	[0.0065-0.0138] unit decrease	NR [~ 10000000] (imputed)	N
905	chr22	41958861	41958862	rs9607819	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter non-alcoholic beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	22q13.2	CSDC2	rs9607819-G	0.8068	2E-10		0.0131	[0.0092-0.017] unit increase	Affymetrix [~ 7740000] (imputed)	N
905	chr22	41970103	41970104	rs78404259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q13.2		rs78404259-?	NR	1E-8				NR [~ 8900000] (imputed)	N
905	chr22	41979667	41979668	rs4822044	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	22q13.2	NR	rs4822044-C		3E-6		0.0584	[0.034-0.083] unit decrease	Illumina [at least 4916924] (imputed)	N
905	chr22	41992168	41992169	rs62236533	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.2	NR	rs62236533-G	0.0974155	9E-14		0.07920433	[0.058-0.1] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
905	chr22	41992168	41992169	rs62236533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.2	Intergenic	rs62236533-A	0.1102	3E-17	(MTAG)	0.0311	[0.024-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr22	41992168	41992169	rs62236533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.2	Intergenic	rs62236533-A	0.1102	5E-14		0.0345	[0.025-0.044] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
905	chr22	41992168	41992169	rs62236533	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs62236533-A	NR	1E-12		7.105	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
905	chr22	41992168	41992169	rs62236533	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	DESI1	rs62236533-A	NR	4E-8		5.511	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
905	chr22	42025822	42025823	rs28741121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.2	Intergenic	rs28741121-A	0.1741	7E-17	(MTAG)	0.0182	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr22	42025822	42025823	rs28741121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	22q13.2	Intergenic	rs28741121-G	0.8259	9E-9		0.0172	[0.011-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
905	chr22	42025822	42025823	rs28741121	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.2	Intergenic	rs28741121-A	0.175	8E-13	(MTAG)	0.0125	[0.0092-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
905	chr22	42025822	42025823	rs28741121	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs28741121-A	NR	4E-11		6.609	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
905	chr22	42026493	42026493	rs34290865	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	22q13.2	XRCC6	rs34290865-CT	0.808936110007755	7E-9		0.049995754	[0.033-0.067] unit decrease	Affymetrix [35186738] (imputed)	N
905	chr22	42038785	42038786	rs73161324	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	XRCC6	rs73161324-T	0.06	2E-9	(EA)	1.06	[1.02-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
905	chr22	42038785	42038786	rs73161324	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	22q13.2	XRCC6	rs73161324-T	0.05	3E-11		0.496	[0.36-0.63] unit increase	Affymetrix [~ 9800000] (imputed)	N
905	chr22	42070373	42070374	rs41311445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q13.2		rs41311445-C	NR	2E-13		0.0259	[0.019-0.033] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
905	chr22	42070373	42070374	rs41311445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q13.2		rs41311445-C	NR	1E-17		0.024	[0.019-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
905	chr22	42070373	42070374	rs41311445	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.2	SNU13	rs41311445-A	0.9042	5E-24		0.0328	[0.027-0.039] unit increase	Affymetrix [18391927] (imputed)	N
905	chr22	42070373	42070374	rs41311445	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q13.2	NHP2L1, SREBF2	rs41311445-A	0.903386	3E-13		0.032564	[0.024-0.041] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
906	chr22	42153291	42153292	rs5751150	29112194	Agrawal A	2017-11-07	Mol Psychiatry	Genome-wide association study identifies a novel locus for cannabis dependence.	Cannabis dependence symptom count	8,050 European ancestry individuals	NA	22q13.2	NR	rs5751150-T		2E-6		0.06	[0.035-0.084] unit decrease	Illumina [at least 4916924] (imputed)	N
906	chr22	42170934	42170935	rs17377987	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	22q13.2	NR	rs17377987-G	0.0632337	3E-7		1.15	[1.09-1.21]	Affymetrix [7791636] (imputed)	N
906	chr22	42173162	42173162	rs11429191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q13.2	MEI1	rs11429191-AT	0.78066	5E-15		0.021884728	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
906	chr22	42173162	42173162	rs11429191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.2	MEI1	rs11429191-A	0.219327	8E-11		0.018125504	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
906	chr22	42184142	42184143	rs55906059	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.2		rs55906059-?	NR	5E-28				NR [~ 8900000] (imputed)	N
906	chr22	42184142	42184143	rs55906059	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	22q13.2	MEI1	rs55906059-T	0.0938	5E-10		0.285	[0.2-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
906	chr22	42194560	42194561	rs1983554	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	22q13.2	MEI1, bK250D10.C22.8	rs1983554-A	0.3611	4E-8		5.51	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
906	chr22	42201516	42201517	rs74705753	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.2	CCDC134	rs74705753-A	NR	1E-8		0.040281642	[0.026-0.054] unit increase	Affymetrix [NR]	N
907	chr22	42210596	42210597	rs11703813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.2	Intergenic	rs11703813-T	0.1614	1E-15	(MTAG)	0.0195	[0.015-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
907	chr22	42210596	42210597	rs11703813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.2	Intergenic	rs11703813-C	0.8386	9E-11		0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
907	chr22	42210984	42210985	rs139568	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	22q13.2	NR	rs139568-C		9E-6		0.1639	[0.091-0.236] SD units decrease	NR [10700000] (imputed)	N
907	chr22	42211788	42211789	rs8137282	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs8137282-G	0.0421	2E-7	(EA)	0.0882	[0.055-0.121] unit increase	Illumina [~ 11800000] (imputed)	N
907	chr22	42212935	42212936	rs4822053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.2	CCDC134	rs4822053-A	0.226716	3E-12		0.018880455	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
907	chr22	42218855	42218856	rs7364180	21123754	Kim S	2010-12-01	Neurology	Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.	Alzheimer's disease biomarkers	96 European ancestry Alzheimer disease cases, 176 European ancestry individuals with mild cognitive impairment, 102 European ancestry controls	NA	22q13.2	CCDC134	rs7364180-?	NR	1E-6	(AB1-42)			Illumina [322557]	N
907	chr22	42226394	42226395	rs5758487	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q13.2	CCDC134, SREBF2	rs5758487-C	0.48	1E-8		5.72	z-score increase	Affymetrix [4312306] (imputed)	N
907	chr22	42226394	42226395	rs5758487	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q13.2	NR	rs5758487-T	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix [9000000] (imputed)	N
907	chr22	42233049	42233050	rs76902725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	22q13.2	NR	rs76902725-T	NR	2E-9		0.0281	[0.019-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
907	chr22	42234936	42234937	rs7287010	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q13.2	NR	rs7287010-T	0.55	2E-10		0.0068988	[0.0048-0.009] unit decrease	NR [9732723] (imputed)	N
907	chr22	42247694	42247695	rs12170228	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	SREBF2	rs12170228-T	NR	6E-10		6.201	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
907	chr22	42248288	42248289	rs80094991	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.2	Intergenic	rs80094991-T	0.0338	4E-10	(MTAG)	0.0286	[0.02-0.038] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
907	chr22	42251809	42251810	rs719440	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs719440-T	NR	2E-8		5.607	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
907	chr22	42259523	42259524	rs62240962	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	22q13.2	SREBF2	rs62240962-C	0.92	4E-12		0.047	[0.033-0.061] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
907	chr22	42280360	42280361	rs2267442	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs2267442-A	NR	3E-8		5.522	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
907	chr22	42280360	42280361	rs2267442	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	SREBF2	rs2267442-A	NR	3E-8		5.549	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
907	chr22	42309243	42309244	rs12160926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.2	NR	rs12160926-A	NR	4E-9		0.0251	[0.017-0.034] unit increase	Affymetrix [9000000] (imputed)	N
907	chr22	42309243	42309244	rs12160926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	22q13.2	NR	rs12160926-A	NR	3E-9		0.0255	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on unswitched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	6E-426		1.494	[1.43-1.56] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on transitional B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09902	3E-282		1.385	[1.32-1.45] unit decrease	Illumina [18237486] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	8E-400		1.466	[1.4-1.53] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on naive-mature B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	1E-428		1.5	[1.43-1.57] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	8E-421		1.488	[1.42-1.55] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	1E-402		1.47	[1.4-1.54] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	4E-400		1.461	[1.39-1.53] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD38+ B cell	3,659 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09905	5E-38		0.5288	[0.45-0.61] unit decrease	Illumina [18238670] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD27- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	2E-314		1.439	[1.37-1.51] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD- CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	2E-306		1.427	[1.36-1.49] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	5E-445		1.516	[1.45-1.58] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38- B cell	3,645 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09888	2E-428		1.496	[1.43-1.56] unit decrease	Illumina [18234152] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD38+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09899	2E-312		1.444	[1.38-1.51] unit decrease	Illumina [18238081] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD24- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	3E-440		1.51	[1.44-1.58] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ CD24+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	3E-418		1.487	[1.42-1.55] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09894	8E-438		1.508	[1.44-1.57] unit decrease	Illumina [18238340] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09896	2E-423		1.493	[1.43-1.56] unit decrease	Illumina [18238311] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on CD20- CD38- B cell	3,592 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09867	7E-37		0.5191	[0.44-0.6] unit decrease	Illumina [18217315] (imputed)	N
907	chr22	42315370	42315371	rs73165129	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on B cell	3,660 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs73165129-T	0.09902	1E-426		1.496	[1.43-1.56] unit decrease	Illumina [18238700] (imputed)	N
907	chr22	42321590	42321591	rs5996087	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on CD20- B cell	3,648 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs5996087-G	0.09974	1E-25		0.4215	[0.34-0.5] unit decrease	Illumina [18233862] (imputed)	N
907	chr22	42322853	42322854	rs7287486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q13.2		rs7287486-T	NR	5E-17		0.0564	[0.043-0.07] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
907	chr22	42322853	42322854	rs7287486	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.2	NR	rs7287486-T	NR	1E-13		0.0601	[0.044-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
907	chr22	42327049	42327050	rs143290435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q13.2	NR	rs143290435-C	0.026224	5E-10		0.040247	[0.028-0.053] SD unit increase	Affymetrix, Illumina [50036608] (imputed)	N
907	chr22	42329274	42329275	rs77441740	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	22q13.2	NR	rs77441740-?	NR	3E-8		1.1770383	[1.12-1.23]	Affymetrix, Illumina [12447948] (imputed)	N
907	chr22	42329283	42329284	rs112045239	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	22q13.2	CCDC134, SREBF2, SHISA8, TNFRSF13C, CENPM	rs112045239-?	NR	1E-8		0.0222342	[0.015-0.03] unit increase	Affymetrix [25921788] (imputed)	N
907	chr22	42336171	42336172	rs5758511	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	22q13.2	CENPM	rs5758511-A	0.27	3E-6		0.027	[0.015-0.039] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
908	chr22	42339524	42339525	rs10483213	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	22q13.2	NR	rs10483213-A	0.091	3E-9		0.038587194	[0.026-0.051] unit decrease	NR [1977400] (imputed)	N
908	chr22	42339524	42339525	rs10483213	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	22q13.2	NR	rs10483213-A	0.085	3E-10		0.06603509	[0.046-0.087] unit decrease	NR [1977400] (imputed)	N
908	chr22	42340507	42340508	rs1023497	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	22q13.2	NR	rs1023497-?		9E-9				NR [8377093]	N
908	chr22	42340843	42340844	rs1023500	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	22q13.2	NR	rs1023500-?		8E-9				NR [8377093]	N
908	chr22	42340843	42340844	rs1023500	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs1023500-T	NR	3E-8		1.08	[NR]	Illumina [7158791] (imputed)	N
908	chr22	42345553	42345554	rs77689114	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	22q13.2	NR	rs77689114-C	0.008712	8E-7		0.7839	[0.47-1.09] unit increase	Illumina [10677593] (imputed)	N
908	chr22	42346041	42346042	rs73165159	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	22q13.2	LINC00634	rs73165159-?	NR	3E-6	(males)	3.3545792		Affymetrix, Illumina [2928658] (imputed)	N
908	chr22	42361180	42361181	rs184244543	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ B cell %Lymphocyte	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs184244543-C	0.0641	3E-8		0.2736	[0.18-0.37] unit increase	Illumina [18238316] (imputed)	N
908	chr22	42365072	42365073	rs10154700	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	22q13.2	NR	rs10154700-G		1E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
908	chr22	42370990	42370991	rs5751191	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.2	NR	rs5751191-T	0.49006	2E-14		0.048405	[0.036-0.061] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
908	chr22	42370990	42370991	rs5751191	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	22q13.2		rs5751191-?	NR	6E-9				NR [7857346] (imputed)	N
908	chr22	42370990	42370991	rs5751191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.2	Intergenic	rs5751191-T	0.4953	9E-15		0.0221	[0.016-0.028] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
908	chr22	42370990	42370991	rs5751191	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs5751191-T	NR	1E-9		6.089	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
908	chr22	42377877	42377878	rs2269665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	22q13.2		rs2269665-A	0.372026476	2E-9		0.05772715	[0.039-0.077] unit increase	Illumina [13429980] (imputed)	N
908	chr22	42385428	42385429	rs62241023	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	22q13.2	SEPT3	rs62241023-G	0.768	3E-6		0.025	[0.015-0.035] unit increase	Affymetrix [~ 10446505] (imputed)	N
908	chr22	42386268	42386269	rs58874647	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	SEPT3	rs58874647-T	NR	3E-9		5.934	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
908	chr22	42391175	42391176	rs133302	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs133302-T	0.284	4E-12	(CYP2D6)	0.04401	NR unit increase	Illumina [1671387] (imputed)	N
908	chr22	42392810	42392811	rs1062753	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	22q13.2	SEPT, LOC100132273, LOC388906, CYP2D6	rs1058172-?	0.155	2E-16	(S-DDCT concentration)			Illumina [7537437] (imputed)	N
908	chr22	42396889	42396890	rs34071114	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	22q13.2	NR	rs34071114-T	0.046004	4E-7		1.077	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
908	chr22	42398851	42398856	rs133310	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.2	WBP2NL	rs133310-?		5E-8				Illumina [4322238] (imputed)	N
908	chr22	42414180	42414181	rs9607868	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs9607868-A	0.2962	2E-13	(CYP2D6)	0.04553	NR unit decrease	Illumina [1671387] (imputed)	N
908	chr22	42414180	42414181	rs9607868	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs9607868-A	NR	3E-8		5.542	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
908	chr22	42418909	42418910	rs133342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.2		rs133342-?	NR	1E-9				NR [~ 8900000] (imputed)	N
908	chr22	42435373	42435373	rs145343339	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.2	WBP2NL	rs145343339-CTT	0.663	3E-12		0.02731753	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
908	chr22	42438424	42438440	rs138898504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	22q13.2		rs138898504-T	NR	3E-9		0.0566	[0.038-0.075] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
908	chr22	42445980	42445993	rs538063388	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	22q13.2	WBP2NL	rs538063388-?	NR	9E-6	(AA)	1.501199	[0.84-2.16] unit decrease	Illumina [30341014] (imputed)	N
908	chr22	42445980	42445993	rs538063388	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Estimated glomerular filtration rate	8,261 African American individuals, 18,548 Hispanic/Latino individuals, 150 Asian ancestry individuals, 602 Native American ancestry individuals, 339 individuals	NA	22q13.2	WBP2NL	rs538063388-?	NR	4E-8		1.144	[0.74-1.55] unit decrease	Illumina [30341014] (imputed)	N
908	chr22	42448760	42448761	rs5758563	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.2	NR	rs5758563-T	NR	3E-9		0.0694	[0.046-0.092] unit decrease	Affymetrix [9000000] (imputed)	N
908	chr22	42455247	42455248	rs62238588	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs62238588-T	NR	1E-8		5.72	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
908	chr22	42458826	42458827	rs55715427	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q13.2		rs55715427-C	0.09697	1E-9		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
909	chr22	42473602	42473603	rs133383	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	22q13.2	FAM109B	rs133383-?	NR	4E-9		5.882	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
909	chr22	42523527	42523528	rs1058172	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	22q13.2	SEPT, LOC100132273, LOC388906, CYP2D6	rs1058172-?	0.155	8E-16	(S-DDCT/S-DCT ratio)			Illumina [7537437] (imputed)	N
909	chr22	42524946	42524947	rs3892097	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q13.2	CYP2D6	rs3892097-T	0.18	6E-16	(alpha-hydroxymetoprolol)	1.698	[1.29-2.11] unit decrease	Illumina [7750367] (imputed)	N
909	chr22	42526693	42526694	rs1065852	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	22q13.2	CYP2D6*4, CYP2D6*10, CYP2D6*14	rs1065852-?	0.215	8E-16	(S-DDCT/S-DCT ratio)			Illumina [7537437] (imputed)	N
909	chr22	42526693	42526694	rs1065852	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	22q13.2	CYP2D6*4, CYP2D6*10, CYP2D6*14	rs1065852-?	0.215	2E-16	(S-DDCT concentration)			Illumina [7537437] (imputed)	N
909	chr22	42537126	42537127	rs3020736	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	22q13.2	CYP2D6, CYP2D7, FAM109B, LINC00634, LOC101929829, NAGA, NDUFA6, NDUFA6-AS1, OGFRP1, SEPT3, SMDT1, TCF20, WBP2NL	rs3020736-?		4E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
909	chr22	42537596	42537597	rs1800754	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.2	CYP2D7P	rs1800754-?	NR	2E-15		0.016218908	[0.012-0.02] unit increase	NR [7306098]	N
909	chr22	42538398	42538399	rs36093924	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	22q13.2	CYP2D7, LINC00634, SEPT3, WBP2NL, NAGA, FAM109B, NDUFA6, LOC101929829, CYP2D6, TCF20	rs36093924-T	0.4595	3E-10	(Adults)	6.306	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
909	chr22	42538398	42538399	rs36093924	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	22q13.2	CYP2D7, LINC00634, SEPT3, WBP2NL, NAGA, FAM109B, NDUFA6, LOC101929829, CYP2D6, TCF20	rs36093924-T	0.4595	3E-10		6.306	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
909	chr22	42540550	42540551	rs2743461	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.2	CYP2D7P1	rs2743461-?		2E-6				Illumina [4322238] (imputed)	N
909	chr22	42540550	42540551	rs2743461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.2	Intergenic	rs2743461-A	0.543	1E-11	(MTAG)	0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
909	chr22	42540550	42540551	rs2743461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.2	Intergenic	rs2743461-A	0.5366	1E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
909	chr22	42540550	42540551	rs2743461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.2	Intergenic	rs2743461-A	0.5332	3E-16	(MTAG)	0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
909	chr22	42540550	42540551	rs2743461	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.2	CYP2D7P	rs2743461-A	NR	2E-9		0.018433131	[0.012-0.024] unit increase	Affymetrix [NR]	N
909	chr22	42541348	42541349	rs5758605	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	CYP2D7P	rs5758605-A	NR	3E-13		7.302	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
909	chr22	42542869	42542870	rs2142694	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Verbal-numerical reasoning	36,035 European ancestry individuals	NA	22q13.2	intergenic	rs2142694-?	NR	7E-12		0.05119	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
909	chr22	42545220	42545221	rs5751229	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q13.2	NR	rs5751229-A	0.22803399999999996	2E-12		0.0110158	[0.008-0.014] unit increase	Affymetrix [16578495] (imputed)	N
909	chr22	42545220	42545221	rs5751229	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q13.2	NR	rs5751229-A	0.22846200000000005	6E-14		0.0250506	[0.018-0.032] unit increase	Affymetrix [16580851] (imputed)	N
909	chr22	42546446	42546447	rs2070904	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q13.2		rs2070904-?	NR	2E-8				NR [~ 8900000] (imputed)	N
909	chr22	42547738	42547739	rs2743465	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.2	Intergenic	rs2743465-A	0.4462	1E-10	(MTAG)	0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
909	chr22	42548432	42548433	rs55750514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.2		rs55750514-?	NR	8E-8				NR [~ 8900000] (imputed)	N
909	chr22	42548879	42548880	rs2743467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.2	CYP2D8P	rs2743467-A	0.670926	2E-32		0.028442675	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
909	chr22	42548924	42548943	rs11268956	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.2	CYP2D8P	rs11268956-C	0.66406	1E-9		0.014599128	[0.0099-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
909	chr22	42549163	42549164	rs5758613	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.2	NR	rs5758613-?		9E-6				Illumina [4322238] (imputed)	N
909	chr22	42552252	42552253	rs742086	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs742086-G	0.2404	5E-12	(CYP2D6)	0.04719	NR unit decrease	Illumina [1671387] (imputed)	N
909	chr22	42561936	42561937	rs11703217	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	22q13.2	TCF20	rs11703217-G	NR	3E-6		0.11590858	[0.066-0.166] unit decrease	Illumina [> 6200000] (imputed)	N
909	chr22	42563307	42563308	rs4453786	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs4453786-T	0.1986	4E-10	(CYP2D6)	0.04434	NR unit decrease	Illumina [1671387] (imputed)	N
909	chr22	42571027	42571028	rs760648	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	22q13.2	NR	rs760648-?		1E-11				NR [8377093]	N
909	chr22	42571027	42571028	rs760648	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	22q13.2	NR	rs760648-?		5E-9				NR [8377093]	N
909	chr22	42571027	42571028	rs760648	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	22q13.2	NR	rs760648-?		3E-9				NR [520857]	N
909	chr22	42571027	42571028	rs760648	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	22q13.2	TCF20, CYP2D6	rs760648-?		1E-8				NR [6786993] (imputed)	N
909	chr22	42571027	42571028	rs760648	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	TCF20	rs760648-A	NR	1E-10	(EA)	1.079	[1.06-1.1]	Illumina [6627481] (imputed)	N
909	chr22	42571027	42571028	rs760648	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	22q13.2	CYP2D6, CYP2D7, FAM109B, LOC101929829, NAGA, NDUFA6, NDUFA6-AS1, OGFRP1, SEPT3, SMDT1, TCF20, WBP2NL	rs760648-A		3E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
909	chr22	42596252	42596253	rs8142673	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	22q13.2	NR	rs8142673-A	0.94	2E-6		1.37	[NR]	Affymetrix [87696888] (imputed)	N
910	chr22	42603813	42603814	rs6002655	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	22q13.2		rs6002655-?	NR	5E-10		0.023	NR unit increase	NR [4502103] (imputed)	N
910	chr22	42603813	42603814	rs6002655	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	22q13.2	NR	rs6002655-T	0.4254	1E-9		0.068141855	[0.046-0.09] unit increase	NR [NR]	N
910	chr22	42603813	42603814	rs6002655	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	22q13.2	NR	rs6002655-?	NR	2E-9				Illumina [up to 5582932] (imputed)	N
910	chr22	42603813	42603814	rs6002655	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	22q13.2	TCF20	rs6002655-T	NR	1E-8		1.059	[1.04-1.08]	Illumina [6627481] (imputed)	N
910	chr22	42603813	42603814	rs6002655	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	22q13.2	CENPM, LINC00634, MIR33A, SEPT3, SHISA8, SREBF2, TNFRSF13C, CYP2D6, CYP2D7P, FAM109B, LOC388906, LOC101929829, NAGA, NDUFA6, NDUFA6-AS1, SMDT1, TCF20, WBP2NL	rs6002655-?	NR	2E-14		1.0775862	[1.06-1.10]	Illumina [8000000] (imputed)	N
910	chr22	42603813	42603814	rs6002655	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs6002655-T	NR	6E-10		1.07	[NR]	Illumina [7158791] (imputed)	N
910	chr22	42603813	42603814	rs6002655	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	22q13.2	CENPM, CYP2D6, FAM109B, NAGA, NDUFA6, SEPT3, SHISA8, SMDT1, SREBF2, TCF20, TNFRSF13C, WBP2NL	rs6002655-T	0.443	2E-9		1.066	[1.044-1.088]	Affymetrix, Illumina [9005918] (imputed)	N
910	chr22	42609147	42609148	rs5758651	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	22q13.2	TCF20	rs5758651-T	0.8029	3E-8		0.0122	[0.0079-0.0165] unit increase	Illumina [246328]	N
910	chr22	42614361	42614362	rs932376	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs932376-C	0.2944	2E-12	(CYP2D6)	0.04337	NR unit decrease	Illumina [1671387] (imputed)	N
910	chr22	42622002	42622003	rs5758659	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	22q13.2	TCF20	rs5758659-?	NR	1E-6		0.027	[0.016-0.038] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
910	chr22	42628334	42628335	rs56906457	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs56906457-G	0.1794	7E-10	(CYP2D6)	0.04693	NR unit decrease	Illumina [1671387] (imputed)	N
910	chr22	42638204	42638205	rs111404889	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	22q13.2		rs111404889-C	0.800997	2E-8		0.0288844	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
910	chr22	42645201	42645202	rs5758682	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.2	TCF20	rs5758682-?		4E-6				Illumina [4322238] (imputed)	N
910	chr22	42652715	42652716	rs134871	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	NR	rs134871-?	NR	2E-7		5.178	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
910	chr22	42652715	42652716	rs134871	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	22q13.2	LOC388906	rs134871-C	0.497	7E-6		0.013	[0.0075-0.0189] kg/m2 increase	Affymetrix, Illumina [2550021]	N
910	chr22	42654326	42654327	rs17478227	31070453	Zekavat SM	2019-04-11	Arterioscler Thromb Vasc Biol	Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease.	Arterial stiffness	131,686 British ancestry individuals	NA	22q13.2	TCF20	rs17478227-?	NR	2E-7		0.024	[0.015-0.033] SD units decrease	Affymetrix [13995214] (imputed)	N
910	chr22	42657565	42657566	rs134873	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	22q13.2		rs134873-G	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
910	chr22	42657565	42657566	rs134873	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	22q13.2		rs134873-?	NR	3E-8				NR [2625067]	N
910	chr22	42661143	42661144	rs134874	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs134874-A	0.3589	2E-9	(CYP2D6)	0.03545	NR unit increase	Illumina [1671387] (imputed)	N
910	chr22	42664200	42664201	rs134879	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	22q13.2	NR	rs134879-?		2E-8				NR [520857]	N
910	chr22	42666025	42666026	rs187166731	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	22q13.2	NR	rs187166731-C		5E-6		0.2325	[0.13-0.33] SD units increase	NR [10700000] (imputed)	N
910	chr22	42670964	42670965	rs134882	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	22q13.2	NR	rs134882-?	NR	7E-6		1.2196	[NR]	Affymetrix [722112]	N
910	chr22	42671486	42671487	rs134883	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs134883-T	0.3084	6E-14	(CYP2D6)	0.04624	NR unit increase	Illumina [1671387] (imputed)	N
910	chr22	42672123	42672124	rs762995	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q13.2	TCF20, NFAM1	rs762995-A	0.467	8E-12		0.0115978	[0.0083-0.0149] unit decrease	Affymetrix [11880941] (imputed)	N
910	chr22	42672123	42672124	rs762995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	22q13.2		rs762995-?	NR	4E-10				NR [~ 8900000] (imputed)	N
910	chr22	42685536	42685537	rs134904	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs134904-A	0.2666	3E-15	(CYP2D6)	0.0485	NR unit increase	Illumina [1671387] (imputed)	N
910	chr22	42688638	42688639	rs9611766	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs9611766-A	0.2456	1E-12	(CYP2D6)	0.04545	NR unit increase	Illumina [1671387] (imputed)	N
910	chr22	42697215	42697216	rs6002676	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	22q13.2		rs6002676-A	0.377	6E-18		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
910	chr22	42697215	42697216	rs6002676	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	22q13.2	NFAM1	rs6002676-A	0.3833	2E-8		0.014796305	[0.0096-0.02] unit increase	Affymetrix [~ 11515000] (imputed)	N
910	chr22	42698429	42698430	rs4822102	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	22q13.2	NR	rs4822102-T	0.618	3E-10		0.016542807	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
910	chr22	42698573	42698574	rs4822103	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q13.2	NR	rs4822103-C	0.618	4E-12		0.00770318	[0.0055-0.0099] unit decrease	NR [9732723] (imputed)	N
910	chr22	42704833	42704834	rs4822107	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q13.2		rs4822107-A	0.5065	2E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
910	chr22	42704833	42704834	rs4822107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	22q13.2		rs4822107-?	NR	9E-10				NR [~ 8900000] (imputed)	N
910	chr22	42705869	42705870	rs4822108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	22q13.2		rs4822108-?	NR	4E-8				NR [~ 8900000] (imputed)	N
910	chr22	42717589	42717590	rs2413685	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.2	Intergenic	rs2413685-A	0.4542	3E-8	(MTAG)	0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
910	chr22	42717589	42717590	rs2413685	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	22q13.2	Intergenic	rs2413685-A	0.4542	3E-8		0.0159	[0.01-0.022] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
910	chr22	42721373	42721374	rs73169175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q13.2		rs73169175-?	NR	2E-8				NR [~ 8900000] (imputed)	N
911	chr22	42731539	42731540	rs4822112	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	22q13.2	NR	rs4822112-G	0.187873	9E-12		0.054908633	[0.039-0.071] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
911	chr22	42731539	42731540	rs4822112	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	22q13.2	NR	rs4822112-T	NR	3E-9		5.943	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
911	chr22	42731539	42731540	rs4822112	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	22q13.2	NR	rs4822112-?	NR	5E-6				Illumina [8270200] (imputed)	N
911	chr22	42815357	42815358	rs7288411	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	22q13.2	NR	rs7288411-A	NR	4E-8		1.03	[1.02-1.04]	NR [NR] (imputed)	N
911	chr22	42821184	42821185	rs8141510	32205469	Akcimen F	2020-03-23	Aging (Albany NY)	Genome-wide association study identifies genetic factors that modify age at onset in Machado-Joseph disease.	Machado-Joseph disease (age at onset)	700 cases	NA	22q13.2	NFAM1	rs8141510-T	0.4254	4E-6		1.82703	[1.05-2.6] unit increase	Illumina [6716580] (imputed)	N
912	chr22	42882011	42882012	rs138514290	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal symptom count	1,703 Finnish ancestry ever smoker individuals from up to 739 families	NA	22q13.2	NR	rs138514290-C	0.023	1E-6		1.23	[0.74-1.72] unit increase	Illumina [9469131] (imputed)	N
912	chr22	42882011	42882012	rs138514290	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	22q13.2	NR	rs138514290-C	0.023282	2E-6		0.2666497	[0.16-0.38] unit increase	Illumina [9469131] (imputed)	N
912	chr22	42939926	42939927	rs141478056	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q13.2	SERHL2	rs141478056-A	0.899898	9E-9		0.0191332	[0.013-0.026] unit increase	Affymetrix [NR] (imputed)	N
912	chr22	42968513	42968514	rs1137256	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	22q13.2	SERHL2	rs1137256-?	0.004682	8E-15		23.62	[7.536-74.05]	Affymetrix [547296]	N
912	chr22	42977714	42977715	rs55657775	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	22q13.2	A4GALT	rs55657775-C	0.542	1E-8	(Hex2Cer d18:1/24:0)	0.1313	[0.087-0.175] unit decrease	Illumina [~ 47000000] (imputed)	N
912	chr22	42977906	42977907	rs137079	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.2		rs137079-T	0.1375	3E-10		0.0128	[0.0089-0.0167] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
912	chr22	42977906	42977907	rs137079	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.2	Intergenic	rs137079-T	0.1375	6E-11	(MTAG)	0.0124	[0.0087-0.0161] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
912	chr22	42982571	42982572	rs137091	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.2		rs137091-C	0.8654	7E-10	(conditional-joint)	0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
913	chr22	43011402	43011403	rs137115	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	22q13.2	NR	rs137115-?	NR	8E-6		0.00475	[0.0027-0.0068] unit decrease	Affymetrix [9658292] (imputed)	N
913	chr22	43015786	43015787	rs61743746	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	22q13.2	CYB5R3	rs61743746-T	0.001961	8E-10	(EA)			Illumina [4404269] (imputed)	N
913	chr22	43028480	43028481	rs3091344	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.2	NR	rs3091344-?	NR	4E-7				Affymetrix [NR]	N
913	chr22	43036778	43036779	rs7284660	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.2		rs7284660-?	NR	8E-8				NR [~ 8900000] (imputed)	N
913	chr22	43079765	43079766	rs192871434	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	22q13.2	NR	rs192871434-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
913	chr22	43093375	43093376	rs9623661	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	22q13.2	NR	rs9623661-C		4E-6		0.1966	[0.11-0.28] SD units increase	NR [10700000] (imputed)	N
913	chr22	43093697	43093698	rs12628541	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q13.2	A4GALT	rs12628541-A	0.895607	1E-26	(lactosyl-N-behenoyl-sphingosine (d18:1/22:0)*)	0.396	[0.32-0.47] unit increase	Illumina [13039987] (imputed)	N
913	chr22	43094084	43094085	rs3761467	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	22q13.2	A4GALT	rs3761467-T	0.4233	1E-23	(Hex2Cer d18:1/24:0)	0.1833	[0.15-0.22] unit increase	Illumina [~ 47000000] (imputed)	N
913	chr22	43096995	43096996	rs7284681	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q13.2	A4GALT	rs7284681-C	0.3477	1E-12		0.02642154	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr22	43105155	43105156	rs5758884	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q13.2	A4GALT	rs5758884-C	0.5823	3E-12	(EA)	0.0025	[0.0017-0.0033] unit decrease	Affymetrix [NR] (imputed)	N
913	chr22	43105155	43105156	rs5758884	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q13.2	A4GALT	rs5758884-?	NR	2E-8		0.0302	[0.02-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
913	chr22	43105257	43105258	rs5758885	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	22q13.2	NR	rs5758885-A	NR	4E-9		0.0317	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
913	chr22	43107688	43107689	rs5758888	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.2	A4GALT	rs5758888-G	0.252108	4E-33		0.03150749	[0.026-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr22	43109838	43109839	rs8139674	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.2	A4GALT	rs8139674-A	0.4792	9E-26		0.03858408	[0.031-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
913	chr22	43110114	43110115	rs5758891	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	22q13.2	A4GALT	rs5758891-A	0.47	4E-12		0.366	[0.26-0.47] unit increase	Affymetrix [NR] (imputed)	N
913	chr22	43110751	43110751	rs143193015	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	22q13.2		rs143193015-GA	NR	2E-9		0.0228	[0.015-0.03] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
913	chr22	43112817	43112818	rs1883991	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	22q13.2	A4GALT	rs1883991-A	0.6879	6E-29		0.0032	[0.0024-0.004] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
913	chr22	43112960	43112961	rs738527	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	22q13.2	A4GALT	rs738527-T	0.2917	9E-34		0.0032	[0.0026-0.0038] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
913	chr22	43113672	43113673	rs6002926	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	22q13.2	NR	rs6002926-T	NR	5E-8		0.22	[0.14-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
913	chr22	43113672	43113673	rs6002926	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	22q13.2	NR	rs6002926-T	NR	3E-7				Affymetrix, Illumina [NR] (imputed)	N
913	chr22	43113792	43113793	rs5751348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q13.2		rs5751348-A	NR	5E-21		0.0198	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
913	chr22	43113792	43113793	rs5751348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	22q13.2		rs5751348-A	NR	4E-33		0.0253	[0.021-0.029] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
913	chr22	43113792	43113793	rs5751348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.2	A4GALT	rs5751348-A	0.471628	2E-52		0.033694085	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
913	chr22	43113792	43113793	rs5751348	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.2	A4GALT	rs5751348-A	0.471609	2E-30		0.025362866	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
913	chr22	43114019	43114020	rs2143918	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.2	NR	rs2143918-C	0.473141	3E-22		0.018057	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
913	chr22	43114019	43114020	rs2143918	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.2		rs2143918-?	NR	4E-13				NR [~ 8900000] (imputed)	N
913	chr22	43114039	43114040	rs2143919	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	22q13.2	A4GALT	rs2143919-C	0.596	2E-17		0.0028	[0.0022-0.0034] unit decrease	Affymetrix [NR] (imputed)	N
913	chr22	43114550	43114551	rs8138197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein A4GALT	5,365 Icelandic ancestry individuals	NA	22q13.2		rs8138197-A	0.4797	3E-31		0.219303	[0.18-0.26] unit decrease	Illumina [7506463] (imputed)	N
913	chr22	43114550	43114551	rs8138197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q13.2		rs8138197-A	NR	2E-8		0.0116	[0.0075-0.0157] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
913	chr22	43114550	43114551	rs8138197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q13.2		rs8138197-A	NR	8E-44		0.0251	[0.022-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
913	chr22	43114550	43114551	rs8138197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q13.2		rs8138197-A	NR	9E-30		0.0193	[0.016-0.023] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
913	chr22	43114550	43114551	rs8138197	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q13.2		rs8138197-A	NR	6E-21		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
913	chr22	43114550	43114551	rs8138197	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	22q13.2		rs8138197-G	0.529	6E-12		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.2	A4GALT	rs8138197-A	0.472	1E-16		0.018530866	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.2	A4GALT	rs8138197-A	0.472068	1E-36		0.027923496	[0.024-0.032] unit increase	Affymetrix [93095623] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.535959	7E-70				Affymetrix, Illumina [24332387] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.473428	7E-67		0.032823	[0.029-0.037] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.533853	5E-47				Affymetrix, Illumina [24653286] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.473596	1E-46		0.02714	[0.023-0.031] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.531624	4E-37				Affymetrix, Illumina [24558453] (imputed)	N
913	chr22	43114550	43114551	rs8138197	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q13.2	NR	rs8138197-A	0.473723	6E-38		0.024381	[0.021-0.028] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
913	chr22	43114550	43114551	rs8138197	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.2		rs8138197-?	NR	9E-57				NR [~ 8900000] (imputed)	N
913	chr22	43115519	43115523	rs66781836	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.2	A4GALT	rs66781836-C	0.472804	1E-19		0.020581493	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
913	chr22	43115519	43115523	rs66781836	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q13.2	A4GALT	rs66781836-C	0.4724	3E-23		0.03535735	[0.028-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
913	chr22	43115521	43115525	rs67162484	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.2	A4GALT	rs67162484-R	0.5303125	2E-15	(A4GALT, 8759_29_3)	0.19610927	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
913	chr22	43115575	43115576	rs5758896	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q13.2	A4GALT	rs5758896-T		2E-31		0.026	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
913	chr22	43115575	43115576	rs5758896	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	22q13.2	NR	rs5758896-?	NR	7E-7		0.0513	[0.031-0.071] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
913	chr22	43115575	43115576	rs5758896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q13.2	A4GALT	rs5758896-C	0.5945	7E-18		0.03104328	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
913	chr22	43115575	43115576	rs5758896	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q13.2	A4GALT	rs5758896-C	0.5945	4E-14		0.02718178	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
913	chr22	43116276	43116277	rs28908470	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	22q13.2	NR	rs28908470-T	0.3232	2E-9		0.001423	[0.00095-0.0019] unit increase	Affymetrix [NR] (imputed)	N
913	chr22	43117594	43117595	rs5751350	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	22q13.2	NR	rs5751350-A	NR	4E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
914	chr22	43123872	43123873	rs6002930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs6002930-C	0.756278	1E-10				Affymetrix, Illumina [21126107] (imputed)	N
914	chr22	43123872	43123873	rs6002930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	22q13.2	NR	rs6002930-C	0.741018	5E-10		0.014316	[0.0098-0.0188] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
914	chr22	43135278	43135279	rs4328732	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q13.2		rs4328732-A	0.816743	2E-10		0.0300902	[0.021-0.039] unit decrease	Illumina [13476266] (imputed)	N
914	chr22	43141019	43141020	rs4822191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q13.2		rs4822191-A	NR	2E-10		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.2		rs4822191-A	0.470471	4E-17		0.018703612	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.2		rs4822191-A	0.470451	1E-18		0.0179391	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.2		rs4822191-A	0.470433	3E-9		0.01311323	[0.0088-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs4822191-G	0.53189	2E-19				Affymetrix, Illumina [22063850] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.2	NR	rs4822191-G	0.528796	9E-22		0.01901	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs4822191-A	0.537957	5E-26				Affymetrix, Illumina [24246363] (imputed)	N
914	chr22	43141019	43141020	rs4822191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs4822191-A	0.538654	7E-11				Affymetrix, Illumina [20825802] (imputed)	N
914	chr22	43141019	43141020	rs4822191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.2		rs4822191-?	NR	7E-8				NR [~ 8900000] (imputed)	N
914	chr22	43141019	43141020	rs4822191	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q13.2	intergenic	rs4822191-A	0.4698	3E-9		0.02104635	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
914	chr22	43141092	43141093	rs4820477	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs4820477-C	0.4847	9E-7	(EA)	0.0307	[0.019-0.043] unit increase	Illumina [~ 11800000] (imputed)	N
914	chr22	43141906	43141907	rs2143923	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	22q13.2	A4GALT	rs2143923-A	0.4836	4E-8		0.0069	[0.0044-0.0094] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
914	chr22	43144487	43144487	rs71186526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.2		rs71186526-CT	0.373943	3E-14		0.019024614	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr22	43146159	43146160	rs3927404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.2		rs3927404-T	0.656607	8E-12		0.016468389	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
914	chr22	43147120	43147121	rs7292939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.2	NR	rs7292939-T	0.477471	9E-12		0.015743807	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
914	chr22	43147120	43147121	rs7292939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.2		rs7292939-T	0.477506	1E-10		0.014756828	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
914	chr22	43148742	43148743	rs545310602	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	NR	rs545310602-?	NR	7E-6		4.486	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
914	chr22	43150522	43150523	rs6002946	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q13.2	A4GALT	rs6002946-G	0.322817	1E-8		0.0116715	[0.0076-0.0157] unit decrease	Affymetrix [NR] (imputed)	N
914	chr22	43158710	43158711	rs9611881	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.2	Y_RNA	rs9611881-A	0.104153	1E-10		0.024016086	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
914	chr22	43160655	43160656	rs5751363	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	22q13.2	Y_RNA	rs5751363-T	0.1557	9E-6		0.051	[0.028-0.074] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
914	chr22	43160755	43160756	rs5758922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	22q13.2	NR	rs5758922-C	NR	4E-10		0.0153	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
914	chr22	43167445	43167446	rs113612962	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	22q13.2		rs113612962-C	0.04017	4E-8		0.3441	[0.22-0.47] unit decrease	Illumina [18238311] (imputed)	N
914	chr22	43183761	43183762	rs1997885	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	22q13.2	A4GALT, ARFGAP3	rs1997885-C	0.36	2E-6		59.6454	[35.14-84.16] kcal/day decrease	Affymetrix [491265]	N
915	chr22	43262739	43262740	rs5758999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.2		rs5758999-?	NR	6E-17				NR [~ 8900000] (imputed)	N
915	chr22	43270876	43270877	rs2092665	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q13.2		rs2092665-A	0.527	2E-17				Affymetrix [10369434] (imputed)	N
915	chr22	43284333	43284334	rs9607978	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q13.2		rs9607978-A	NR	1E-12		0.0117	[0.0086-0.0148] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
915	chr22	43338089	43338090	rs4822235	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.2		rs4822235-T	0.449	3E-23				Affymetrix [10369434] (imputed)	N
915	chr22	43348177	43348178	rs5759054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.2	Intergenic	rs5759054-T	0.4211	9E-9	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
915	chr22	43361946	43361952	rs141925739	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.2	PACSIN2	rs141925739-A	0.550415	4E-132		0.05719243	[0.053-0.062] unit increase	Affymetrix [93095623] (imputed)	N
915	chr22	43372798	43372799	rs5759067	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs5759067-C	0.6033	2E-77				Affymetrix, Illumina [24588908] (imputed)	N
915	chr22	43381649	43381650	rs11705627	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.2	PACSIN2	rs11705627-T	0.447514	1E-24		0.03438851	[0.028-0.041] unit increase	Affymetrix [93095623] (imputed)	N
916	chr22	43385995	43385996	rs8137128	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q13.2	PACSIN2	rs8137128-T	0.5617	4E-29		0.04182835	[0.035-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr22	43386690	43386691	rs3819677	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	22q13.2	NR	rs3819677-C	0.372707	5E-11		0.105186	[0.074-0.137] SD units decrease	Affymetrix, Illumina [28493265] (imputed)	N
916	chr22	43387694	43387695	rs972578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q13.2	PACSIN2	rs972578-T	0.5523	7E-64		0.06145773	[0.054-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr22	43393939	43393940	rs5759080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs5759080-C	0.444458	4E-216				Affymetrix, Illumina [17210439] (imputed)	N
916	chr22	43393939	43393940	rs5759080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q13.2	NR	rs5759080-C	0.450311	8E-206		0.059247	[0.055-0.063] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
916	chr22	43398048	43398049	rs2256040	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.2	PACSIN2	rs2256040-A	0.5506	4E-148		0.09356691	[0.086-0.101] unit increase	Affymetrix [~ 2500000] (imputed)	N
916	chr22	43405016	43405017	rs3838166	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.2	PACSIN2	rs3838166-G	0.549734	6E-99		0.076623894	[0.07-0.084] unit increase	Affymetrix [93095623] (imputed)	N
916	chr22	43405870	43405871	rs5759088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.2	PACSIN2	rs5759088-T	0.537767	4E-52		0.035086233	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
916	chr22	43405870	43405871	rs5759088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q13.2	NR	rs5759088-T	0.539825	1E-72		0.035974	[0.032-0.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
916	chr22	43435667	43435668	rs2072883	31748705	Ohta Y	2019-11-20	Hypertens Res	Genetic factors associated with elevation of uric acid after treatment with thiazide-like diuretic in patients with essential hypertension.	Uric acid elevation in response to thiazide-like diuretic in hypertension	73 Japanese ancestry responders, 53 Japanese ancestry non-responders	NA	22q13.2	TTLL1	rs2072883-C	NR	1E-7	(recessive model)			Affymetrix [290698]	N
916	chr22	43435667	43435668	rs2072883	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.2	NR	rs2072883-A	NR	6E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
916	chr22	43468664	43468665	rs28599928	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.2	NR	rs28599928-T	0.113	2E-6	(EA)	0.047	[0.028-0.066] unit decrease	Illumina [~ 11800000] (imputed)	N
916	chr22	43472310	43472311	rs148289768	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TTLL1	rs148289768-?	NR	2E-12		2.86386	[NR] unit decrease	Affymetrix [NR] (imputed)	N
916	chr22	43491268	43491269	rs9612003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.2	AL022237.3	rs9612003-A	0.458268	1E-10		0.017157737	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
916	chr22	43495738	43495739	rs135009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.2	intergenic	rs135009-A	0.4359	3E-12		0.02545317	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
916	chr22	43499740	43499741	rs6003062	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q13.2	NR	rs6003062-G	NR	4E-23		1.166	[1.13-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
916	chr22	43500211	43500212	rs5759167	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	22q13.2		rs5759167-T	NR	2E-17		0.1027	[0.079-0.126] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
916	chr22	43500211	43500212	rs5759167	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	22q13.2		rs5759167-?	NR	1E-17		0.86215	[0.83-0.9]	NR [680312]	N
916	chr22	43500211	43500212	rs5759167	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	22q13.2	NR	rs5759167-G	0.50244081	2E-13		1.1383158	[1.10-1.18]	Affymetrix, Illumina [20400945] (imputed)	N
916	chr22	43500211	43500212	rs5759167	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q13.2	NR	rs5759167-G	NR	7E-65		1.125	[1.11-1.14]	Affymetrix, Illumina [29235255] (imputed)	N
916	chr22	43500211	43500212	rs5759167	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	22q13.2	NR	rs5759167-G	NR	4E-25		1.16	NR	Affymetrix [at least 232408] (imputed)	N
916	chr22	43500211	43500212	rs5759167	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	22q13.2		rs5759167-G	NR	1E-21		1.1506	NR	Affymetrix [7846216] (imputed)	N
916	chr22	43500211	43500212	rs5759167	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	22q13.2		rs5759167-G	NR	2E-18		1.137	[1.105-1.171]	Affymetrix [7846216] (imputed)	N
916	chr22	43500211	43500212	rs5759167	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	22q13.2	NR	rs5759167-G	0.5	6E-71		1.15	[1.14-1.17]	Illumina [20370935] (imputed)	N
916	chr22	43500211	43500212	rs5759167	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	22q13.2	NR	rs5759167-G	0.51	5E-9	(European)	1.14	[1.09-1.19]	Affymetrix [up to 19977088] (imputed)	N
916	chr22	43500211	43500212	rs5759167	26034056	Hoffmann TJ	2015-06-01	Cancer Discov	A large multiethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.	Prostate cancer	6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls	4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls	22q13.2	NR	rs5759167-G	0.505	2E-9		1.13	[1.09-1.18]	Affymetrix [up to 19977088] (imputed)	N
916	chr22	43500211	43500212	rs5759167	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	22q13.2	BIK	rs5759167-G	0.5	1E-16		1.18	[1.12-1.22]	Illumina [1531807] (imputed)	N
916	chr22	43500211	43500212	rs5759167	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	22q13.2	NR	rs5759167-?	0.53	6E-29		1.16	[1.14-1.20]	Illumina [541129]	N
916	chr22	43501619	43501620	rs73179053	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	22q13.2		rs73179053-T	NR	2E-8		1.196	[1.123-1.273]	Affymetrix [7846216] (imputed)	N
916	chr22	43505156	43505157	rs4988362	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.2		rs4988362-?	NR	5E-9				NR [~ 8900000] (imputed)	N
916	chr22	43509667	43509668	rs9620115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.2		rs9620115-?	NR	8E-9				NR [~ 8900000] (imputed)	N
916	chr22	43511867	43511868	rs11704452	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	22q13.2	NR	rs11704452-G	0.172	3E-13		0.0255914	[0.019-0.032] unit decrease	Affymetrix [3505788] (imputed)	N
916	chr22	43515338	43515339	rs4988389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	22q13.2		rs4988389-G	NR	1E-9		0.0208	[0.014-0.027] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
917	chr22	43516132	43516133	rs4988394	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	22q13.2	NR	rs4988394-A	NR	1E-9		0.0212	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
917	chr22	43518274	43518275	rs742134	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	22q13.2	BIK	rs742134-G	NR	6E-6	(conditioned on rs5759167)	1.16	[1.01-1.23]	Illumina [571243]	N
917	chr22	43523187	43523188	rs760699	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	22q13.2	NR	rs760699-T	0.1282	7E-11		0.0249536	[0.017-0.032] unit decrease	Affymetrix [3505788] (imputed)	N
917	chr22	43528239	43528240	rs2245946	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	22q13.2	NR	rs2245946-A	0.500599	9E-45		0.0317	[0.027-0.036] unit increase	Affymetrix [23037915] (imputed)	N
917	chr22	43549115	43549115	rs138177673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q13.2	TSPO	rs138177673-CTCTT	0.5787	1E-12		0.02630196	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
917	chr22	43549636	43549637	rs6003078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q13.2		rs6003078-A	NR	3E-34		0.0295	[0.025-0.034] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
917	chr22	43549645	43549646	rs62234274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q13.2	TSPO	rs62234274-T	0.573138	6E-26		0.024459941	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr22	43549738	43549739	rs138909	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q13.2		rs138909-?	NR	2E-13				NR [~ 8900000] (imputed)	N
917	chr22	43553829	43553830	rs2016151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	22q13.2	TSPO	rs2016151-G	0.398896	1E-11		0.015366826	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
917	chr22	43559450	43559451	rs138918	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.2	TSPO, TTLL12	rs138918-A	0.392068	6E-43		0.031168247	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
917	chr22	43559450	43559451	rs138918	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs138918-A	0.29934	5E-13				Affymetrix, Illumina [24649327] (imputed)	N
917	chr22	43559450	43559451	rs138918	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q13.2	TTLL12, TSPO	rs138918-A	0.3925	4E-22		0.0353758	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
917	chr22	43560762	43560763	rs47341	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	22q13.2		rs47341-C	0.604	6E-24				Affymetrix [10369434] (imputed)	N
917	chr22	43560762	43560763	rs47341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q13.2	NR	rs47341-T	0.396441	1E-15		0.015865	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
917	chr22	43560762	43560763	rs47341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q13.2	NR	rs47341-T	0.395885	2E-10		0.013023	[0.009-0.017] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
917	chr22	43560762	43560763	rs47341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.2	NR	rs47341-T	0.331302	8E-52				Affymetrix, Illumina [23467995] (imputed)	N
917	chr22	43560762	43560763	rs47341	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.2	NR	rs47341-T	0.396	1E-54		0.031081	[0.027-0.035] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
917	chr22	43561758	43561759	rs138921	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.2	TSPO	rs138921-?	NR	3E-6	(aspartate)	1.0142969	[0.59-1.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
917	chr22	43562828	43562829	rs47340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.2	TTLL12	rs47340-T	0.395772	1E-14		0.017886285	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
917	chr22	43562828	43562829	rs47340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.2	TTLL12	rs47340-T	0.395806	2E-12		0.016303362	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
917	chr22	43579048	43579049	rs13058467	23918034	Kuhnisch J	2013-08-07	Clin Oral Investig	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	22q13.2	SCUBE1, TTLL12	rs13058467-C	0.104	4E-7		4.4	[2.5-7.8]	Affymetrix [2013491] (imputed)	N
917	chr22	43591483	43591484	rs537957130	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	22q13.2	SCUBE1	rs537957130-T	0.9961	1E-6		0.4003	[0.24-0.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
917	chr22	43624764	43624765	rs139014	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.2	NR	rs139014-C	0.167018170449488	5E-6	(IGP8)	0.1994	[0.11-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
917	chr22	43635572	43635573	rs5751452	23149075	Aslibekyan S	2012-11-10	Nutr Metab Cardiovasc Dis	Preliminary evidence of genetic determinants of adiponectin response to fenofibrate in the Genetics of Lipid Lowering Drugs and Diet Network.	Response to fenofibrate (adiponectin levels)	793 European ancestry individuals	NA	22q13.2	SCUBE1	rs5751452-?	NR	2E-6	(Baseline)	0.31	[0.19-0.43] ng/dL decrease	Affymetrix [2543887] (imputed)	N
917	chr22	43646703	43646704	rs60198979	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	22q13.2	NR	rs60198979-G	NR	3E-6		0.2146	[0.12-0.3] SD units increase	NR [10700000] (imputed)	N
918	chr22	43653624	43653625	rs139030	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.2	SCUBE1	rs139030-A	0.7773	3E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
918	chr22	43653624	43653625	rs139030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.2		rs139030-?	NR	4E-13				NR [~ 8900000] (imputed)	N
918	chr22	43662240	43662241	rs528981060	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	22q13.2	NR	rs528981060-A	0.0	2E-8		1.68	[1.4-2.02]	Affymetrix, Illumina [up to 17000000] (imputed)	N
918	chr22	43715847	43715848	rs2859441	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SCUBE1	5,362 Icelandic ancestry individuals	NA	22q13.2		rs2859441-A	0.1387	1E-22		0.262274	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
918	chr22	43715861	43715862	rs2744874	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.2	SCUBE1	rs2744874-T	0.86640625	4E-14	(SCUBE1, 8989_40_3)	0.2699982	[0.2-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
918	chr22	43724685	43724686	rs9623812	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	22q13.2	SCUBE1	rs9623812-?		3E-6		0.34	[NR] unit decrease	Illumina [6030476] (imputed)	N
918	chr22	43742431	43742432	rs201156432	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (1 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	22q13.2		rs201156432-?	NR	3E-7				Illumina [1365315]	N
918	chr22	43743899	43743900	rs4822282	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	22q13.2	NR	rs4822282-?	NR	5E-6		0.067820296	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
918	chr22	43746705	43746706	rs7286683	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	22q13.2	NR	rs7286683-T	0.01	2E-6	(Asian)	1.18	[0.69-1.67] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
918	chr22	43761867	43761868	rs761743	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.2	NR	rs761743-A	0.2203	3E-8				NR [9056863] (imputed)	N
919	chr22	43788829	43788830	rs5996329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.2		rs5996329-C	0.4	4E-13		7.26	z score increase	Affymetrix [9061022] (imputed)	N
919	chr22	43788829	43788830	rs5996329	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.2	NR	rs5996329-C	0.3701	1E-15				NR [9056863] (imputed)	N
919	chr22	43789268	43789269	rs2015868	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.2		rs2015868-C	0.14	3E-16		8.17	z score increase	Affymetrix [9061022] (imputed)	N
919	chr22	43807262	43807263	rs5759325	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.2	NR	rs5759325-?	NR	9E-6		4.447	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
919	chr22	43836587	43836588	rs34680523	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MPPED1	rs34680523-?	NR	1E-8		1.13666	[NR] unit increase	Affymetrix [NR] (imputed)	N
919	chr22	43881484	43881485	rs80124836	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.2	NR	rs80124836-T	0.02962	7E-9	(AKR7A3)	0.7326	NR unit increase	Illumina [1671387] (imputed)	N
919	chr22	43882225	43882226	rs116472104	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	22q13.2	MPPED1	rs116472104-C	NR	1E-8		0.512	[0.34-0.69] unit increase	NR [11024754] (imputed)	N
919	chr22	43885005	43885006	rs28672990	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	22q13.2	NR	rs28672990-C	0.44209	2E-6		2.194999	[1.30-3.09] unit increase	Illumina [9469131] (imputed)	N
919	chr22	43888352	43888353	rs141389097	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.2	Intergenic	rs141389097-A	0.3771	2E-8		0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
919	chr22	43895201	43895202	rs143634450	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	22q13.2	NR	rs143634450-A	0.0394467	1E-6		1.39	[1.22-1.58]	Illumina [8992756] (imputed)	N
919	chr22	43903507	43903508	rs11555872	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.2	MPPED1, EFCAB6	rs11555872-T	0.561	2E-7		0.017083	[0.011-0.023] unit decrease	Illumina [13520550] (imputed)	N
919	chr22	43903507	43903508	rs11555872	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.2	Intergenic	rs11555872-T	NR	7E-6	(women)	0.0209629	[0.012-0.03] unit decrease	Illumina [13520550] (imputed)	N
919	chr22	43903507	43903508	rs11555872	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	22q13.2	Intergenic	rs11555872-T	NR	2E-6		0.0178383	[0.01-0.025] unit decrease	Illumina [13520550] (imputed)	N
920	chr22	43922498	43922499	rs9614176	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic systolic blood pressure minus ambulatory systolic blood pressure)	206 Finnish ancestry individuals	NA	22q13.2	EFCAB6	rs9614176-A	0.14	9E-7		5.4	[3.24-7.56] unit increase	Illumina [629414]	N
920	chr22	43946475	43946476	rs137156	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.2	Intergenic	rs137156-T	0.13	1E-12	(MTAG)	0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
920	chr22	43946475	43946476	rs137156	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.2	Intergenic	rs137156-T	0.1294	5E-12	(MTAG)	0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
920	chr22	43993871	43993872	rs12627753	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.2	Intergenic	rs12627753-G	0.8935	6E-13		0.0227	[0.016-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
920	chr22	44014023	44014023	rs6147637	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.2	EFCAB6	rs6147637-?	NR	2E-7		0.0169638	[0.011-0.023] unit increase	Illumina [13520550] (imputed)	N
921	chr22	44059919	44059920	rs137761	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	22q13.2	EFCAB6	rs137761-G	NR	6E-6		0.0158321	[0.009-0.0227] unit increase	Illumina [13519193] (imputed)	N
921	chr22	44154000	44154000	rs11419537	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.2	EFCAB6	rs11419537-?	NR	1E-6		0.0151336	[0.009-0.0213] unit decrease	Illumina [13520550] (imputed)	N
922	chr22	44204318	44204319	rs8140172	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.31	NR	rs8140172-C	0.985708288681948	6E-6	(IGP45)	0.8795	[0.5-1.26] unit decrease	Illumina [~ 2500000] (imputed)	N
922	chr22	44248503	44248504	rs470089	23386860	Pasquale LR	2013-01-30	Front Genet	Exploring genome-wide - dietary heme iron intake interactions and the risk of type 2 diabetes.	Type 2 diabetes (dietary heme iron intake interaction)	1,806 European ancestry cases, 2,965 European ancestry controls	NA	22q13.31	SULT4A1	rs470089-?	NR	9E-6		0.55	[NR] unit decrease	Affymetrix [681770]	N
922	chr22	44276170	44276171	rs470093	24847357	Ye Z	2014-05-09	Front Genet	Genome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections.	Staphylococcus aureus infection	309 European ancestry cases, 2,925 European ancestry controls	NA	22q13.31	PNPLA5	rs470093-T	0.146838	7E-6		1.63	[1.31-2.02]	Illumina [508921]	N
922	chr22	44293067	44293068	rs80634	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Mycobacteriaceae abundance in stool	5,959 Finnish ancestry individuals	NA	22q13.31		rs80634-A	0.127993	3E-8		0.0282725	[0.018-0.038] unit increase	Illumina [7980478] (imputed)	N
922	chr22	44293067	44293068	rs80634	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Corynebacterium abundance in stool	5,959 Finnish ancestry individuals	NA	22q13.31		rs80634-A	0.127993	9E-9		0.0285123	[0.019-0.038] unit increase	Illumina [7980478] (imputed)	N
923	chr22	44305573	44305574	rs149157446	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	22q13.31	Intergenic	rs149157446-G	0.999	3E-6	(AA)	0.502	unit increase	Illumina [NR] (imputed)	N
923	chr22	44324726	44324727	rs738409	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	22q13.31	NR	rs738409-C	0.7782	1E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [7072771] (imputed)	N
923	chr22	44324726	44324727	rs738409	34957434	Haas ME	2021-12-01	Cell Genom	Machine learning enables new insights into genetic contributions to liver fat accumulation.	Liver fat	32,974 European ancestry individuals	7,479 European ancestry individuals			rs738409-G	NR	6E-95		0.195	[0.18-0.21] unit increase	Affymetrix [9802892] (imputed)	N
923	chr22	44324726	44324727	rs738409	34902334	Trepo E	2021-12-11	Lancet Oncol	Common genetic variation in alcohol-related hepatocellular carcinoma: a case-control genome-wide association study.	Alcohol-related hepatocellular carcinoma	775 European ancestry cases, 1,332 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.33	9E-7		1.41	[1.23-1.62]	Illumina [7962325] (imputed)	N
923	chr22	44324726	44324727	rs738409	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	NR	1E-47		0.2869	[0.25-0.33] unit increase	NR [6787908] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	2E-12		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	7E-23		0.0199	[0.016-0.024] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-70		0.038	[0.034-0.042] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	2E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-21		0.0213	[0.017-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-8		0.0125	[0.0082-0.0168] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	8E-29		0.0251	[0.021-0.03] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	1E-28		0.0205	[0.017-0.024] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	2E-18		0.0165	[0.013-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Esophageal varix	2,135 European ancestry cases, 434,019 European ancestry controls, 264 East Asian ancestry cases, 177,516 East Asian ancestry controls	NA	22q13.31		rs738409-G	NR	1E-15		0.2787	[0.21-0.35] unit increase	Affymetrix, Illumina [25840700] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-361		0.0881	[0.084-0.092] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
923	chr22	44324726	44324727	rs738409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	22q13.31		rs738409-G	0.455476	3E-71		0.0606877	[0.054-0.067] unit increase	Illumina [13478866] (imputed)	N
923	chr22	44324726	44324727	rs738409	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs738409-G	NR	8E-14		0.134526	[0.099-0.17] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44324726	44324727	rs738409	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-19		0.153529	[0.12-0.19] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44324726	44324727	rs738409	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs738409-G	NR	3E-14		0.134264	[0.1-0.169] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44324726	44324727	rs738409	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs738409-G	NR	2E-14		0.0768165	[0.057-0.096] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44324726	44324727	rs738409	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	22q13.31		rs738409-?	NR	1E-7		0.803	[0.7401-0.8713]	Affymetrix [7975321] (imputed)	N
923	chr22	44324726	44324727	rs738409	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	22q13.31	NR	rs738409-C	0.78	2E-11		1.1	NR	NR [8853336] (imputed)	N
923	chr22	44324726	44324727	rs738409	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?	NR	6E-315		0.0131	[0.013-0.014] unit increase	Affymetrix [21347608] (imputed)	N
923	chr22	44324726	44324727	rs738409	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?	NR	7E-318		0.0217	[0.021-0.023] unit increase	Affymetrix [21347608] (imputed)	N
923	chr22	44324726	44324727	rs738409	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Percent liver fat	32,858 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?	NR	1E-133		0.229	NR % increase	Affymetrix [9390170] (imputed)	N
923	chr22	44324726	44324727	rs738409	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	22q13.31		rs738409-C	0.3944	5E-11		0.063	[0.044-0.082] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
923	chr22	44324726	44324727	rs738409	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	22q13.31	PNPLA3	rs738409-C	0.783424	1E-300		0.0212986	[0.02-0.022] unit decrease	Affymetrix [13995440] (imputed)	N
923	chr22	44324726	44324727	rs738409	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.22	2E-8		0.87	[0.83-0.92]	Affymetrix [710030]	N
923	chr22	44324726	44324727	rs738409	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	22q13.31	PNPLA3	rs738409-G	0.22	1E-300		37.7	z-score increase	Affymetrix [4314223] (imputed)	N
923	chr22	44324726	44324727	rs738409	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	22q13.31	PNPLA3	rs738409-G	0.22	5E-300		37.0	z-score increase	Affymetrix [4312306] (imputed)	N
923	chr22	44324726	44324727	rs738409	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	22q13.31	NR	rs738409-C	0.78	3E-17		0.0187	[0.014-0.023] unit increase	NR [NR]	N
923	chr22	44324726	44324727	rs738409	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Aspartate aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?		5E-74		0.0692	[0.062-0.077] unit increase	Illumina [31500000] (imputed)	N
923	chr22	44324726	44324727	rs738409	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?		2E-82		0.07	[0.063-0.077] unit increase	Illumina [31500000] (imputed)	N
923	chr22	44324726	44324727	rs738409	33310085	Emdin CA	2020-12-10	Gastroenterology	Association of genetic variation with cirrhosis: a multi-trait genome-wide association and gene-environment interaction study.	Cirrhosis (multi-trait analysis)	4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements	3,554 European, African, Asian and unknown ancestry cases, 343,286 European, African, Asian and unknown ancestry controls	22q13.31	PNPLA3	rs738409-G	0.23	2E-290				Affymetrix, Illumina [3163456] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216068	2E-23		0.027246974	[0.022-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216077	2E-34		0.033490367	[0.028-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216219	3E-25		0.027489014	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216253	4E-38		0.034532275	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216244	2E-30		0.030665915	[0.025-0.036] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.217215	1E-49		0.033393	[0.029-0.038] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	22q13.31	NR	rs738409-C	0.547888	1E-33		0.045057	[0.038-0.052] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738409-G	0.265207	7E-49				Affymetrix, Illumina [24653286] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.217408	2E-47		0.032669	[0.028-0.037] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738409-G	0.264435	6E-38				Affymetrix, Illumina [24558453] (imputed)	N
923	chr22	44324726	44324727	rs738409	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.217344	2E-37		0.02894	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
923	chr22	44324726	44324727	rs738409	32766472	Park SL	2020-06-25	Hepatol Commun	Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study.	Percent liver fat	269 African American individuals, 424 Japanese American individuals, 345 Latino individuals, 270 Native Hawaiian individuals, 382 European ancestry individuals	NA	22q13.31	NR	rs738409-?	NR	3E-11		0.06893308	[0.049-0.089] unit increase	Illumina [9789995] (imputed)	N
923	chr22	44324726	44324727	rs738409	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	22q13.31		rs738409-?	0.2165	2E-8		0.003208	unit increase	NR [6200000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	22q13.31		rs738409-?	0.2165	9E-17		0.0112	unit increase	NR [6200000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	22q13.31		rs738409-?	0.2165	2E-78		0.02301	unit increase	NR [6200000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	22q13.31		rs738409-?	0.2165	7E-63		0.02781	unit increase	NR [6200000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	22q13.31		rs738409-?	0.2165	9E-82		0.03299	unit increase	NR [6200000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G		9E-29		0.029	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic steatohepatitis	836 European ancestry cases, 17,781 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-?	NR	3E-44		2.053	[1.856-2.271]	Illumina [7412560] (imputed)	N
923	chr22	44324726	44324727	rs738409	32298765	Anstee QM	2020-04-13	J Hepatol	Genome-wide association study of non-alcoholic fatty liver and steatohepatitis in a histologically-characterised cohort.	Nonalcoholic fatty liver disease	1,483 European ancestry cases, 17,781 European ancestry controls	559 European ancestry cases, 945 European ancestry controls	22q13.31	PNPLA3	rs738409-G	NR	1E-49		1.827	[1.687-1.979]	Illumina [7412560] (imputed)	N
923	chr22	44324726	44324727	rs738409	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fibrosis and steatohepatitis severity (MRI cT1 measure)	14,440 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G	0.21	1E-12		0.095	[0.068-0.122] unit increase	Affymetrix [~ 12000000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32247823	Parisinos CA	2020-04-02	J Hepatol	Genome-wide and Mendelian randomisation studies of liver MRI yield insights into the pathogenesis of steatohepatitis.	Liver fat content (MRI proton density fat fraction measure)	14,440 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G	0.788816	5E-66		0.173	[0.15-0.19] unit increase	Affymetrix [~ 12000000] (imputed)	N
923	chr22	44324726	44324727	rs738409	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-C	0.783224	5E-10		0.0143977	[0.0099-0.0189] unit increase	Affymetrix [NR] (imputed)	N
923	chr22	44324726	44324727	rs738409	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-C	0.783162	2E-21		0.0226623	[0.018-0.027] unit increase	Affymetrix [NR] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.21645999999999999	7E-21		0.0147054	[0.012-0.018] unit increase	Affymetrix [16578495] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	22q13.31	NR	rs738409-G	0.21641	4E-43		0.0512185	[0.044-0.058] unit increase	Affymetrix [16577313] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.21616100000000005	3E-114		0.0230066	[0.021-0.025] unit increase	Affymetrix [16582909] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q13.31	NR	rs738409-G	0.21621199999999996	3E-98		0.0294479	[0.027-0.032] unit increase	Affymetrix [16582621] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.31	NR	rs738409-G	0.21616100000000005	4E-104		0.0245155	[0.022-0.027] unit increase	Affymetrix [16582965] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q13.31	NR	rs738409-G	0.21621199999999996	2E-96		0.0309602	[0.028-0.034] unit increase	Affymetrix [16582614] (imputed)	N
923	chr22	44324726	44324727	rs738409	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	22q13.31	NR	rs738409-C	0.783867	2E-8		0.0170731	[0.011-0.023] unit increase	Affymetrix [16585745] (imputed)	N
923	chr22	44324726	44324727	rs738409	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Nonalcoholic fatty liver disease	1,106 European ancestry cases, 8,571 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.23282	2E-20		1.7882	[1.58162-2.02176]	NR [7263501] (imputed)	N
923	chr22	44324726	44324727	rs738409	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G	0.408511	4E-8		0.854154	[0.56-1.15] unit increase	NR [7263501] (imputed)	N
923	chr22	44324726	44324727	rs738409	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.31		rs738409-?	NR	4E-25				NR [~ 8900000] (imputed)	N
923	chr22	44324726	44324727	rs738409	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q13.31	PNPLA3	rs738409-C	0.7355	4E-8		0.0341	[0.022-0.046] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
923	chr22	44324726	44324727	rs738409	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.227	3E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [247470]	N
923	chr22	44324726	44324727	rs738409	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q13.31	PNPLA3	rs738409-G	0.239	3E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [247470]	N
923	chr22	44324726	44324727	rs738409	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.227	8E-7		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
923	chr22	44324726	44324727	rs738409	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q13.31	PNPLA3	rs738409-G	0.239	2E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [247470]	N
923	chr22	44324726	44324727	rs738409	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-?	NR	3E-62		0.06442	[0.057-0.072] unit increase	Illumina [6108953] (imputed)	N
923	chr22	44324726	44324727	rs738409	29271184	Chung GE	2017-12-26	Gut Liver	Genetic Polymorphisms of PNPLA3 and SAMM50 Are Associated with Nonalcoholic Fatty Liver Disease in a Korean Population.	Nonalcoholic fatty liver disease	1,593 East Asian ancestry cases, 2,816 East Asian ancestry controls	744 East Asian ancestry cases, 1,137 East Asian ancestry controls	22q13.31	PNPLA3	rs738409-G	0.398	2E-15		1.537	[1.383-1.709]	Affymetrix [584061]	N
923	chr22	44324726	44324727	rs738409	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G	0.216	6E-9		0.0288866	[0.019-0.038] unit decrease	Affymetrix [16832071] (imputed)	N
923	chr22	44324726	44324727	rs738409	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	22q13.31	PNPLA3	rs738409-G		3E-8		1.29	[1.04-1.58]	Affymetrix, Illumina [NR] (imputed)	N
923	chr22	44324726	44324727	rs738409	26690388	Tang CS	2015-12-22	Nat Commun	Exome-wide association analysis reveals novel coding sequence variants associated with lipid traits in Chinese.	Total triglycerides levels	12,685 Chinese ancestry individuals	NA	22q13.31	PNPLA3	rs738409-G	0.36	4E-8		0.07	[0.05-0.09] unit decrease	Illumina [286795]	N
923	chr22	44324726	44324727	rs738409	26482880	Buch S	2015-10-19	Nat Genet	A genome-wide association study confirms PNPLA3 and identifies TM6SF2 and MBOAT7 as risk loci for alcohol-related cirrhosis.	Cirrhosis (alcohol related)	712 European ancestry cases, 1,426 European ancestry alchocol dependent controls	1,148 European ancestry cases, 922 European ancestry alchocol dependent controls	22q13.31	PNPLA3	rs738409-G	0.27	2E-48		2.19	[1.97-2.43]	Illumina [6770425] (imputed)	N
923	chr22	44324726	44324727	rs738409	24531328	Kozlitina J	2014-02-16	Nat Genet	Exome-wide association study identifies a TM6SF2 variant that confers susceptibility to nonalcoholic fatty liver disease.	Nonalcoholic fatty liver disease	2,448 African American individuals, 1,365 European ancestry individuals, 753 Hispanic individuals, 141 other ancestries individuals	NA	22q13.31	PNPLA3	rs738409-?	NR	4E-16				Illumina [138374]	N
923	chr22	44324726	44324727	rs738409	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.31	SAMM50	rs738409-?	NR	3E-6	(TAG 56:6)	0.18719612	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
923	chr22	44324726	44324727	rs738409	22719876	Kawaguchi T	2012-06-14	PLoS One	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NA	22q13.31	PNPLA3	rs738409-G	0.484	1E-10		1.66	[1.43-1.94]	Illumina [484751]	N
923	chr22	44324726	44324727	rs738409	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (alanine transaminase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	22q13.31	PNPLA3, SAMM50	rs738409-G	0.23	1E-45		6.0	[5.0-7.0] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
923	chr22	44324726	44324727	rs738409	21423719	Speliotes EK	2011-03-10	PLoS Genet	Genome-wide association analysis identifies variants associated with nonalcoholic fatty liver disease that have distinct effects on metabolic traits.	Nonalcoholic fatty liver disease	880 Amish individuals, 6,296 European ancestry individuals	592 European ancestry cases, 1,405 European ancestry controls	22q13.31	PNPLA3	rs738409-G	0.23	4E-34	(GOLD)	0.26	[0.22-0.30] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	22q13.31		rs738408-C	0.783362	8E-23		0.0496947	[0.04-0.06] unit increase	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	22q13.31		rs738408-C	0.783466	4E-21		0.0465313	[0.037-0.056] unit increase	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of linoleic acid to total fatty acids	115,006 European ancestry individuals	NA	22q13.31		rs738408-C	0.783466	3E-13		0.035356	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	22q13.31		rs738408-C	0.783453	7E-12		0.0335177	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	22q13.31		rs738408-C	0.783362	1E-17		0.0429664	[0.033-0.053] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	22q13.31		rs738408-C	0.783453	2E-28		0.0556106	[0.046-0.065] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	22q13.31		rs738408-C	0.78346	1E-10		0.0323695	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	22q13.31		rs738408-C	0.783453	3E-9		0.0283435	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	22q13.31		rs738408-C	0.783362	5E-21		0.046922	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	22q13.31		rs738408-C	0.783362	2E-16		0.0416071	[0.032-0.052] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	22q13.31		rs738408-C	0.783362	2E-20		0.0466027	[0.037-0.056] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324729	44324730	rs738408	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease	2,181 European ancestry cases, 2,444 European ancestry controls	NA	22q13.31		rs738408-?	NR	4E-16		0.0645405	[0.049-0.08] unit decrease	NR [NR]	N
923	chr22	44324729	44324730	rs738408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	150,068 East Asian ancestry individuals	NA	22q13.31		rs738408-T	0.455669	3E-87		0.0689503	[0.062-0.076] unit increase	Illumina [13478956] (imputed)	N
923	chr22	44324729	44324730	rs738408	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs738408-T	NR	3E-10		0.0402	[0.028-0.053] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44324729	44324730	rs738408	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs738408-A	NR	3E-10		0.047	[0.032-0.062] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44324729	44324730	rs738408	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.31		rs738408-C	0.783	5E-19				Affymetrix [10369434] (imputed)	N
923	chr22	44324729	44324730	rs738408	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs738408-?		1E-8		0.0207	[0.014-0.028] unit increase	Illumina [31500000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216227	2E-13		0.019748755	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216357	5E-9		0.015692843	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216308	6E-16		0.021770239	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216106	3E-15		0.02156841	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216232	2E-22		0.0250209	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-C	0.782084	4E-16				Affymetrix, Illumina [22063850] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.31	NR	rs738408-C	0.782977	4E-17		0.019378	[0.015-0.024] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-T	0.26516	1E-82				Affymetrix, Illumina [24588908] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-T	0.247272	9E-14				Affymetrix, Illumina [23114412] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	22q13.31	NR	rs738408-T	0.216873	8E-12		0.01613	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-C	0.783714	2E-17				Affymetrix, Illumina [17210439] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q13.31	NR	rs738408-C	0.783199	8E-19		0.020696	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-T	0.259384	7E-34				Affymetrix, Illumina [24246363] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.31	NR	rs738408-T	0.217123	8E-27		0.023777	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
923	chr22	44324729	44324730	rs738408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs738408-T	0.261963	9E-33				Affymetrix, Illumina [20825802] (imputed)	N
923	chr22	44324729	44324730	rs738408	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	22q13.31		rs738408-?	0.2164	2E-8		0.003208	unit increase	NR [6200000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	22q13.31		rs738408-?	0.2164	9E-17		0.0112	unit increase	NR [6200000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	22q13.31		rs738408-?	0.2164	2E-78		0.02302	unit increase	NR [6200000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	22q13.31		rs738408-?	0.2164	7E-63		0.02782	unit increase	NR [6200000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	22q13.31		rs738408-?	0.2164	8E-82		0.03301	unit increase	NR [6200000] (imputed)	N
923	chr22	44324729	44324730	rs738408	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q13.31	PNPLA3	rs738408-T		1E-28		0.03	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
923	chr22	44324729	44324730	rs738408	31815349	Chen VL	2019-12-09	Liver Int	Genetic variants that associate with liver cirrhosis have pleiotropic effects on human traits.	Cirrhosis	1,088 British ancestry cases, 407,873 British ancestry controls	875 European ancestry cases, 30,346 European ancestry controls	22q13.31	PNPLA3	rs738408-T	0.216	7E-18		0.472	[0.36-0.58] unit increase	Affymetrix [18530078] (imputed)	N
923	chr22	44324729	44324730	rs738408	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Total cholesterol levels	10,137 African American individuals, 17,802 Hispanic/Latino individuals, 2,387 Asian ancestry individuals, 1,915 Native Hawaiian ancestry individuals, 604 Native American ancestry individuals, 340 individuals	NA	22q13.31	PNPLA3	rs738408-?	NR	3E-7	(Hispanic/Latino)	2.469396	[1.52-3.42] unit decrease	Illumina [32003504] (imputed)	N
923	chr22	44324729	44324730	rs738408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.31		rs738408-?	NR	4E-16				NR [~ 8900000] (imputed)	N
923	chr22	44324729	44324730	rs738408	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q13.31	PNPLA3	rs738408-T	0.2261	1E-10		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
923	chr22	44324729	44324730	rs738408	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Aspartate aminotransferase levels	134,154 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs738408-?	NR	4E-74		0.06968	[0.062-0.077] unit increase novel	Illumina [6108953] (imputed)	N
923	chr22	44324729	44324730	rs738408	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	22q13.31	PNPLA3	rs738408-T		2E-7	(EA)	1.36	[1.05-1.77]	Affymetrix, Illumina [NR] (imputed)	N
923	chr22	44324729	44324730	rs738408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q13.31	PNPLA3	rs738408-T	0.2156	7E-11		0.02901757	[0.02-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44324729	44324730	rs738408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216	3E-12		0.03000536	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44324729	44324730	rs738408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q13.31	PNPLA3	rs738408-T	0.216	6E-9		0.02494926	[0.017-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	22q13.31		rs3747207-G	0.784966	7E-9		0.0288532	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785005	2E-13		0.0367849	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	3E-9		0.0292799	[0.02-0.039] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	4E-8		0.027621	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	6E-9		0.0286469	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	3E-9		0.0297501	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785005	6E-12		0.0330817	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	2E-11		0.0329961	[0.023-0.043] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	5E-10		0.0314014	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	1E-14		0.037818	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	1E-8		0.0285307	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for LDL particles	115,082 European ancestry individuals	NA	22q13.31		rs3747207-G	0.785004	1E-18		0.0432358	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
923	chr22	44324854	44324855	rs3747207	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARFIP2	5,364 Icelandic ancestry individuals	NA	22q13.31		rs3747207-A	0.2298	5E-12		0.152786	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q13.31		rs3747207-A	NR	1E-13		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	22q13.31		rs3747207-A	0.45251	2E-9		0.0212271	[0.014-0.028] unit decrease	Illumina [13475706] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	22q13.31		rs3747207-A	0.453285	7E-38		0.0429808	[0.036-0.05] unit decrease	Illumina [13478928] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	379 European ancestry cases, 475,259 European ancestry controls, 2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	22q13.31		rs3747207-A	NR	4E-14		0.2256	[0.17-0.28] unit increase	Affymetrix, Illumina [25843189] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hepatic cancer	2,122 East Asian ancestry cases, 159,201 East Asian ancestry controls	NA	22q13.31		rs3747207-A	0.45223993	2E-8		0.17805915	[0.12-0.24] unit increase	Illumina [13427386] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	22q13.31		rs3747207-A	NR	5E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q13.31		rs3747207-A	NR	2E-344		0.0844	[0.08-0.089] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34535985	Fairfield CJ	2021-09-17	Hepatol Commun	Genome-Wide Association Study of NAFLD Using Electronic Health Records.	Nonalcoholic fatty liver disease	4,761 European ancestry cases, 373,227 European ancestry controls	2,656 European ancestry cases, 32,602 European ancestry controls	22q13.31		rs3747207-A	0.215	2E-87		1.45	[1.38-1.51]	Affymetrix [9723654] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs3747207-G	NR	5E-12		0.0639	[0.046-0.082] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs3747207-A	NR	5E-12		0.1748	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	22q13.31	NR	rs3747207-?	NR	2E-12	(Asian)	0.110671364	[0.08-0.142] unit increase	Affymetrix [21347608] (imputed)	N
923	chr22	44324854	44324855	rs3747207	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	22q13.31	NR	rs3747207-?	NR	6E-9	(Asian)	0.0872815	[0.058-0.117] unit increase	Affymetrix [21347608] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.31	NR	rs3747207-A	0.215331	1E-25		0.02444	[0.02-0.029] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	22q13.31		rs3747207-?	0.2145	2E-8		0.003215	unit increase	NR [6200000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	22q13.31		rs3747207-?	0.2145	2E-16		0.01112	unit increase	NR [6200000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	22q13.31		rs3747207-?	0.2145	6E-78		0.02303	unit increase	NR [6200000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	22q13.31		rs3747207-?	0.2145	2E-62		0.02784	unit increase	NR [6200000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Alanine transaminase levels in high alcohol intake	34,238 British ancestry individuals	NA	22q13.31		rs3747207-?	0.2145	4E-82		0.03319	unit increase	NR [6200000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q13.31	NR	rs3747207-G	0.7791	9E-18		0.0471	[0.036-0.058] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q13.31	NR	rs3747207-G	0.7178	4E-21		0.0412	[0.033-0.05] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	22q13.31	NR	rs3747207-A	0.214383	1E-30		0.0172527	[0.014-0.02] unit increase	Affymetrix [16585854] (imputed)	N
923	chr22	44324854	44324855	rs3747207	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	22q13.31	NR	rs3747207-A	0.214383	4E-27		0.018691	[0.015-0.022] unit increase	Affymetrix [16585866] (imputed)	N
923	chr22	44324854	44324855	rs3747207	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	22q13.31	NR	rs3747207-?	NR	6E-8		0.0143	[0.0092-0.0194] unit increase	Illumina [~ 7800000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	22q13.31	NR	rs3747207-?	NR	3E-9		0.0238	[0.016-0.032] unit increase	Illumina [~ 7800000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.31	NR	rs3747207-G	NR	4E-9		0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
923	chr22	44324854	44324855	rs3747207	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	22q13.31	NR	rs3747207-G	0.781	5E-8	(EA)	0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
923	chr22	44324854	44324855	rs3747207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q13.31	PNPLA3	rs3747207-A	0.2139	5E-9		0.02530545	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44324854	44324855	rs3747207	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q13.31	PNPLA3	rs3747207-A	0.2138	9E-15		0.03453617	[0.026-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44325515	44325516	rs12485100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12485100-G	NR	8E-27		0.0587	[0.048-0.069] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44325515	44325516	rs12485100	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12485100-A	NR	8E-27		0.0649	[0.053-0.077] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44325515	44325516	rs12485100	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	22q13.31	PNPLA3	rs12485100-T	0.1726	2E-10		0.03262	[0.023-0.043] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
923	chr22	44325564	44325565	rs12484801	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484801-C	NR	7E-27		0.0629	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44325564	44325565	rs12484801	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484801-T	NR	7E-27		0.1146	[0.094-0.136] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44325630	44325631	rs12484809	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484809-G	NR	7E-27		0.0866	[0.071-0.102] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44325630	44325631	rs12484809	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484809-G	NR	8E-27		0.0843	[0.069-0.1] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44325630	44325631	rs12484809	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	22q13.31	PNPLA3	rs12484809-T	0.2839	2E-20		0.0348	[0.028-0.042] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
923	chr22	44325630	44325631	rs12484809	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	22q13.31	NR	rs12484809-T	0.3206	1E-9	(men)	0.0352	[0.024-0.047] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
923	chr22	44325630	44325631	rs12484809	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	22q13.31	NR	rs12484809-T	0.2971	6E-9	(women)	0.0311	[0.021-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
923	chr22	44325995	44325996	rs12483959	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs12483959-A	NR	3E-10		0.128454	[0.089-0.168] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44325995	44325996	rs12483959	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs12483959-A	NR	2E-15		0.153603	[0.12-0.19] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44325995	44325996	rs12483959	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs12483959-A	NR	3E-11		0.133474	[0.094-0.173] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44325995	44325996	rs12483959	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12483959-G	NR	6E-27		0.08	[0.065-0.095] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44325995	44325996	rs12483959	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12483959-T	NR	6E-27		0.1145	[0.094-0.135] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44325995	44325996	rs12483959	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Alanine aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	22q13.31	PNPLA3	rs12483959-?		6E-8				Affymetrix [at least 805769] (imputed)	N
923	chr22	44325995	44325996	rs12483959	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q13.31	PNPLA3	rs12483959-A	0.42	2E-39	(ALT)	0.001	[0.00080-0.00120] IU/L increase	Affymetrix [~ 2200000] (imputed)	N
923	chr22	44325995	44325996	rs12483959	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	22q13.31	PNPLA3	rs12483959-A	0.42	2E-18	(ALT)	0.0039	[0.0031-0.0047] IU/L decrease	Affymetrix [~ 2200000] (imputed)	N
923	chr22	44326271	44326272	rs9625962	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs9625962-G	NR	7E-10		0.071	[0.048-0.094] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44326271	44326272	rs9625962	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs9625962-G	NR	7E-10		0.0627	[0.043-0.083] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44326699	44326700	rs11090617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs11090617-C	NR	2E-31		0.0954	[0.079-0.111] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44326699	44326700	rs11090617	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs11090617-A	NR	2E-31		0.1348	[0.11-0.16] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44327178	44327179	rs16991158	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs16991158-T	NR	3E-22		0.0561	[0.045-0.067] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44327178	44327179	rs16991158	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs16991158-G	NR	3E-22		0.0824	[0.066-0.099] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44327191	44327192	rs36055245	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs36055245-G	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44327191	44327192	rs36055245	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs36055245-G	NR	2E-12		0.0417	[0.03-0.053] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44327218	44327219	rs9625963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q13.31	NR	rs9625963-T	NR	2E-10		0.0407	[0.028-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr22	44327218	44327219	rs9625963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs9625963-T	NR	4E-54		0.0984	[0.086-0.111] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44327218	44327219	rs9625963	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs9625963-T	NR	3E-40		0.0843	[0.072-0.097] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44327272	44327273	rs12484700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	22q13.31		rs12484700-G	0.456741	3E-13		0.0266522	[0.02-0.034] unit increase	Illumina [13476299] (imputed)	N
923	chr22	44327272	44327273	rs12484700	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484700-T	NR	6E-27		0.1208	[0.099-0.143] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44327272	44327273	rs12484700	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484700-C	NR	6E-27		0.0637	[0.052-0.075] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44327272	44327273	rs12484700	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Cirrhosis	2,184 Japanese ancestry cases, 210,269 Japanese ancestry controls	NA	22q13.31		rs12484700-G	0.453955229	1E-12		1.2448415	[1.172047324-1.322156697]	Illumina [8919992] (imputed)	N
923	chr22	44328729	44328730	rs4823173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823173-C	NR	2E-11		0.0869	[0.061-0.112] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44328729	44328730	rs4823173	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823173-T	NR	2E-11		0.1181	[0.084-0.153] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44328729	44328730	rs4823173	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Aspartate aminotransferase levels	3,644 Mexican American ancestry individuals	NA	22q13.31	PNPLA3	rs4823173-?	NR	3E-10				Illumina [659222]	N
923	chr22	44328729	44328730	rs4823173	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	22q13.31	PNPLA3	rs4823173-?	NR	7E-8				Illumina [659211]	N
923	chr22	44328729	44328730	rs4823173	25246029	DiStefano JK	2014-09-23	Acta Diabetol	Genome-wide analysis of hepatic lipid content in extreme obesity.	Hepatic lipid content in extreme obesity	1,868 European ancestry cases	NA	22q13.31	PNPLA3	rs4823173-?	NR	3E-7				Illumina [605718]	N
923	chr22	44329077	44329078	rs2076211	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	22q13.31		rs2076211-T	NR	4E-10		0.0616	[0.042-0.081] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
923	chr22	44329077	44329078	rs2076211	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2076211-T	NR	2E-13		0.0821	[0.06-0.104] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44329077	44329078	rs2076211	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2076211-C	NR	2E-13		0.0572	[0.042-0.072] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44329077	44329078	rs2076211	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	22q13.31	NR	rs2076211-T	0.158474	2E-12		0.018018	[0.013-0.023] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
923	chr22	44329077	44329078	rs2076211	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	22q13.31	PNPLA3	rs2076211-T	0.4495	9E-9	(Japanese)	0.0232	[0.015-0.031] unit decrease	Illumina [1986983] (imputed)	N
923	chr22	44329077	44329078	rs2076211	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	22q13.31	SAMM50	rs2076211-T	0.171	1E-6	(Trans-ethnic initial)	0.0219	[0.013-0.031] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
923	chr22	44329274	44329275	rs2294433	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294433-T	NR	4E-13		0.0786	[0.057-0.1] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44329274	44329275	rs2294433	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294433-G	NR	4E-13		0.1652	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44329274	44329275	rs2294433	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs2294433-?	NR	5E-10		0.02651	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
923	chr22	44329579	44329580	rs78569621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q13.31	NR	rs78569621-T	NR	1E-14		0.0779	[0.058-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr22	44329579	44329580	rs78569621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs78569621-T	NR	1E-19		0.0912	[0.071-0.111] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44329579	44329580	rs78569621	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs78569621-T	NR	2E-25		0.1048	[0.085-0.125] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44330030	44330031	rs1977080	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1977080-G	NR	1E-13		0.0481	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44330030	44330031	rs1977080	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1977080-G	NR	1E-13		0.0783	[0.058-0.099] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44330030	44330031	rs1977080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	22q13.31		rs1977080-?	NR	5E-8				NR [~ 8900000] (imputed)	N
923	chr22	44330030	44330031	rs1977080	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs1977080-?	NR	2E-10		0.02727	[0.019-0.036] unit increase novel	Illumina [6108953] (imputed)	N
923	chr22	44330127	44330128	rs1977081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1977081-A	NR	1E-13		0.0587	[0.043-0.074] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44330127	44330128	rs1977081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1977081-T	NR	1E-13		0.0514	[0.038-0.065] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44330127	44330128	rs1977081	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	22q13.31	PNPLA3	rs1977081-?	NR	3E-22		0.04145	[0.033-0.05] unit decrease novel	Illumina [6108953] (imputed)	N
923	chr22	44330212	44330213	rs12484466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	22q13.31	NR	rs12484466-A	0.5436	4E-12		0.02876	[0.021-0.037] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
923	chr22	44330212	44330213	rs12484466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	22q13.31	NR	rs12484466-A	0.5436	4E-13		0.0303	[0.022-0.038] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
923	chr22	44331512	44331513	rs1997693	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	135,808 East Asian ancestry individuals	NA	22q13.31		rs1997693-G	0.448629	3E-8		0.0198627	[0.013-0.027] unit decrease	Illumina [13476599] (imputed)	N
923	chr22	44331512	44331513	rs1997693	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1997693-A	NR	1E-13		0.1671	[0.12-0.21] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331512	44331513	rs1997693	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1997693-T	NR	1E-13		0.0642	[0.047-0.081] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44331777	44331778	rs13056638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13056638-T	NR	2E-25		0.0701	[0.057-0.083] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331777	44331778	rs13056638	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13056638-T	NR	2E-25		0.1083	[0.088-0.129] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331814	44331815	rs1883348	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1883348-G	NR	1E-13		0.0482	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331814	44331815	rs1883348	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1883348-T	NR	1E-13		0.0482	[0.035-0.061] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331942	44331943	rs1883349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1883349-T	NR	1E-13		0.1075	[0.079-0.136] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331942	44331943	rs1883349	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1883349-C	NR	1E-13		0.0873	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44331942	44331943	rs1883349	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.31	SAMM50	rs1883349-?	NR	7E-6	(TAG 56:4)	0.20662817	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
923	chr22	44332476	44332477	rs2281138	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281138-G	NR	4E-13		0.0546	[0.04-0.069] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44332476	44332477	rs2281138	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281138-C	NR	4E-13		0.0413	[0.03-0.052] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332492	44332493	rs2281137	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281137-G	NR	4E-13		0.0562	[0.041-0.071] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332492	44332493	rs2281137	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281137-C	NR	4E-13		0.0882	[0.064-0.112] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2281135-A	NR	3E-10		0.126888	[0.088-0.166] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2281135-A	NR	6E-15		0.149187	[0.11-0.19] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:5_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2281135-A	NR	4E-11		0.13065	[0.092-0.169] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281135-C	NR	4E-13		0.0572	[0.042-0.073] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281135-A	NR	4E-13		0.0609	[0.044-0.077] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2281135-A	NR	2E-10		0.07138	[0.049-0.093] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44332569	44332570	rs2281135	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:3_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2281135-A	NR	4E-10		0.0673844	[0.046-0.088] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44332569	44332570	rs2281135	18940312	Yuan X	2008-10-10	Am J Hum Genet	Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes.	Liver enzyme levels	7,751 European ancestry individuals	1,005 European ancestry individuals, 3,669 Asian Indian ancestry individuals	22q13.31	PNPLA3, SAMM50	rs2281135-T	0.18	8E-16	(ALT)	0.06	[0.046-0.074] U/L increase	Affymetrix, Illumina [up to 496032]	N
923	chr22	44332652	44332653	rs2072907	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q13.31		rs2072907-G	0.450235	2E-12		0.0253918	[0.018-0.032] unit increase	Illumina [13476266] (imputed)	N
923	chr22	44332652	44332653	rs2072907	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072907-T	NR	2E-13		0.0862	[0.063-0.109] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332652	44332653	rs2072907	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072907-G	NR	2E-13		0.0616	[0.045-0.078] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44332877	44332878	rs34879941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34879941-C	NR	2E-12		0.0613	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44332877	44332878	rs34879941	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34879941-C	NR	2E-12		0.0433	[0.031-0.055] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44333171	44333172	rs2072906	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072906-C	NR	2E-13		0.0577	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333171	44333172	rs2072906	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072906-A	NR	2E-13		0.0577	[0.042-0.073] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333369	44333370	rs2076207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2076207-G	NR	2E-13		0.0561	[0.041-0.071] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333369	44333370	rs2076207	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2076207-C	NR	2E-13		0.0865	[0.063-0.11] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333478	44333479	rs2072905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072905-G	NR	2E-13		0.175	[0.13-0.22] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44333478	44333479	rs2072905	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2072905-T	NR	2E-13		0.1273	[0.093-0.161] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44333693	44333694	rs2896019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	22q13.31		rs2896019-G	NR	3E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
923	chr22	44333693	44333694	rs2896019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	22q13.31		rs2896019-G	0.455062485	3E-14		0.21670689	[0.16-0.27] unit increase	Illumina [13429980] (imputed)	N
923	chr22	44333693	44333694	rs2896019	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cirrhosis	122 European ancestry cases, 347,284 European ancestry controls, 2,551 East Asian ancestry cases, 176,175 East Asian ancestry controls	NA	22q13.31		rs2896019-G	NR	4E-15		0.2204	[0.17-0.28] unit increase	Affymetrix, Illumina [20457790] (imputed)	N
923	chr22	44333693	44333694	rs2896019	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2896019-T	NR	2E-12		0.0755	[0.055-0.096] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333693	44333694	rs2896019	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2896019-T	NR	2E-12		0.0602	[0.044-0.077] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333693	44333694	rs2896019	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic steatohepatitis-derived hepatocellular carcinoma	58 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	22q13.31	PNPLA3	rs2896019-G	0.46	2E-8		3.37	[2.21-5.14]	Illumina [93606]	N
923	chr22	44333693	44333694	rs2896019	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	22q13.31	PNPLA3	rs2896019-G	0.46	2E-31		1.85	[1.67-2.05]	Illumina [93606]	N
923	chr22	44333693	44333694	rs2896019	23535911	Kitamoto T	2013-03-28	Hum Genet	Genome-wide scan revealed that polymorphisms in the PNPLA3, SAMM50, and PARVB genes are associated with development and progression of nonalcoholic fatty liver disease in Japan.	Pediatric non-alcoholic fatty liver disease activity score	392 Japanese ancestry cases, 934 Japanese ancestry controls	172 Japanese ancestry cases, 1,012 Japanese ancestry controls	22q13.31	PARVB, PNPLA3, SAMM50	rs2896019-G	0.45	2E-20		2.02	[1.60-2.56]	Illumina [261540]	N
923	chr22	44333693	44333694	rs2896019	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	22q13.31	PARVB, PNPLA3, SAMM50	rs2896019-G	0.45	2E-12	(AST)	0.085	[0.061-0.109] unit decrease	Illumina [561583]	N
923	chr22	44333693	44333694	rs2896019	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	22q13.31	PARVB, PNPLA3, SAMM50	rs2896019-G	0.45	2E-12	(ALT)	0.085	[0.061-0.109] unit increase	Illumina [561583]	N
923	chr22	44333944	44333945	rs2401512	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2401512-G	NR	5E-13		0.0429	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333944	44333945	rs2401512	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2401512-G	NR	5E-13		0.0429	[0.031-0.054] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333967	44333968	rs2896020	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2896020-A	NR	2E-12		0.1499	[0.11-0.19] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44333967	44333968	rs2896020	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2896020-C	NR	2E-12		0.0399	[0.029-0.051] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44334475	44334476	rs4823176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823176-T	NR	2E-11		0.0348	[0.025-0.045] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44334475	44334476	rs4823176	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823176-C	NR	2E-11		0.0513	[0.036-0.066] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44334485	44334486	rs4823177	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823177-T	NR	2E-11		0.0359	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44334485	44334486	rs4823177	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823177-G	NR	2E-11		0.0382	[0.027-0.049] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44334528	44334529	rs4823178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823178-A	NR	2E-11		0.0478	[0.034-0.062] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44334528	44334529	rs4823178	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823178-T	NR	2E-11		0.0359	[0.025-0.046] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44334528	44334529	rs4823178	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Triacylglycerol 56:6 levels	1,937 individuals	NA	22q13.31	PNPLA3	rs4823178-C	0.299	2E-10		0.2543	[0.18-0.33] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
923	chr22	44334841	44334842	rs2281293	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281293-A	NR	4E-13		0.0446	[0.033-0.057] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44334841	44334842	rs2281293	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2281293-T	NR	4E-13		0.0844	[0.062-0.107] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44334841	44334842	rs2281293	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	22q13.31	PNPLA3	rs2281293-T	0.559	5E-9	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [5864938] (imputed)	N
923	chr22	44335330	44335331	rs16991175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs16991175-T	NR	3E-22		0.0498	[0.04-0.06] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44335330	44335331	rs16991175	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs16991175-T	NR	3E-22		0.0832	[0.066-0.1] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44335405	44335406	rs35621602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs35621602-C	NR	2E-12		0.065	[0.047-0.083] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44335405	44335406	rs35621602	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs35621602-T	NR	2E-12		0.109	[0.079-0.139] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44335415	44335416	rs34352134	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34352134-G	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44335415	44335416	rs34352134	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34352134-A	NR	2E-12		0.0614	[0.044-0.078] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44335452	44335453	rs34376930	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34376930-A	NR	2E-12		0.0596	[0.043-0.076] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44335452	44335453	rs34376930	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs34376930-T	NR	2E-12		0.0811	[0.059-0.104] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44335743	44335744	rs2073081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2073081-G	NR	2E-13		0.0954	[0.07-0.121] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44335743	44335744	rs2073081	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2073081-A	NR	2E-13		0.0509	[0.037-0.064] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44335743	44335744	rs2073081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs2073081-C	0.225362	3E-15				Affymetrix, Illumina [24649327] (imputed)	N
923	chr22	44336097	44336098	rs1010023	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1010023-C	NR	1E-40		0.0914	[0.078-0.105] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336097	44336098	rs1010023	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1010023-G	NR	1E-40		0.1066	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336309	44336310	rs1010022	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1010022-C	NR	8E-41		0.1063	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336309	44336310	rs1010022	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1010022-T	NR	8E-41		0.1063	[0.091-0.122] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336495	44336496	rs8142145	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs8142145-G	NR	6E-10		0.0638	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44336495	44336496	rs8142145	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs8142145-T	NR	6E-10		0.0709	[0.049-0.093] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336956	44336957	rs73176497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs73176497-C	NR	3E-10		0.0792	[0.055-0.104] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44336956	44336957	rs73176497	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs73176497-C	NR	3E-10		0.0643	[0.044-0.084] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44337532	44337533	rs926633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs926633-G	NR	6E-10		0.073	[0.05-0.096] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44337532	44337533	rs926633	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs926633-G	NR	6E-10		0.0645	[0.044-0.085] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44339525	44339526	rs13056555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13056555-G	NR	2E-25		0.0671	[0.055-0.08] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44339525	44339526	rs13056555	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13056555-A	NR	2E-25		0.0767	[0.062-0.091] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44340085	44340086	rs36069781	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs36069781-G	NR	2E-12		0.0754	[0.054-0.097] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44340085	44340086	rs36069781	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs36069781-C	NR	2E-12		0.0364	[0.026-0.047] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44340903	44340904	rs2294915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	22q13.31		rs2294915-C	0.7682	1E-8		0.0270875	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
923	chr22	44340903	44340904	rs2294915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	22q13.31		rs2294915-C	0.7682	6E-9		0.0285004	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
923	chr22	44340903	44340904	rs2294915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	22q13.31		rs2294915-C	0.7682	5E-12		0.0335143	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
923	chr22	44340903	44340904	rs2294915	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	22q13.31		rs2294915-C	0.768204	5E-8		0.0237315	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
923	chr22	44340903	44340904	rs2294915	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294915-G	NR	4E-13		0.0775	[0.057-0.098] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44340903	44340904	rs2294915	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294915-C	NR	4E-13		0.189	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44340903	44340904	rs2294915	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.31	PNPLA3	rs2294915-T	0.231401	1E-11		0.01786934	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
923	chr22	44340903	44340904	rs2294915	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	22q13.31	PNPLA3	rs2294915-T	NR	1E-58		0.7387	[0.65-0.83] unit increase	Illumina [9377111] (imputed)	N
923	chr22	44340903	44340904	rs2294915	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q13.31	NR	rs2294915-C	0.768407	6E-10		0.0141373	[0.0097-0.0186] unit increase	Affymetrix [15000001]	N
923	chr22	44340903	44340904	rs2294915	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	22q13.31	PNPLA3	rs2294915-T	0.341226	4E-7		0.196268	[0.12-0.27] unit increase	NR [7263501] (imputed)	N
923	chr22	44340903	44340904	rs2294915	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q13.31	PNPLA3	rs2294915-T	0.246	3E-8		0.0177	[0.011-0.024] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
923	chr22	44340903	44340904	rs2294915	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q13.31	PNPLA3	rs2294915-T	0.2308	1E-10		0.02690143	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
923	chr22	44340921	44340922	rs2294916	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294916-G	NR	4E-13		0.0611	[0.045-0.078] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44340921	44340922	rs2294916	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2294916-G	NR	4E-13		0.189	[0.14-0.24] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341192	44341193	rs4823179	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823179-C	NR	2E-11		0.0396	[0.028-0.051] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44341192	44341193	rs4823179	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823179-T	NR	2E-11		0.0585	[0.041-0.076] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341192	44341193	rs4823179	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.31	SAMM50	rs4823179-?	NR	9E-6	(TAG 56:5)	0.19705887	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
923	chr22	44341297	44341298	rs4823180	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823180-T	NR	2E-11		0.0806	[0.057-0.104] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341297	44341298	rs4823180	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823180-A	NR	2E-11		0.0806	[0.057-0.104] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341605	44341606	rs4823181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823181-G	NR	2E-11		0.1684	[0.12-0.22] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44341605	44341606	rs4823181	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs4823181-A	NR	2E-11		0.0804	[0.057-0.104] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341665	44341666	rs13055900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13055900-C	NR	2E-25		0.0775	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44341665	44341666	rs13055900	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13055900-G	NR	2E-25		0.0625	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341671	44341672	rs13055874	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13055874-G	NR	2E-25		0.0625	[0.051-0.074] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44341671	44341672	rs13055874	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs13055874-C	NR	2E-25		0.0775	[0.063-0.092] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44342324	44342325	rs2294919	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of docosahexaenoic acid to total fatty acid levels	115,006 European ancestry individuals	NA	22q13.31		rs2294919-C	0.752068	6E-9		0.0269599	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
923	chr22	44342968	44342969	rs2008451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2008451-G	NR	1E-13		0.0871	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44342968	44342969	rs2008451	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs2008451-C	NR	1E-13		0.0871	[0.064-0.11] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44343150	44343151	rs1810508	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1810508-A	NR	9E-14		0.1303	[0.096-0.165] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44343150	44343151	rs1810508	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs1810508-T	NR	1E-13		0.0877	[0.065-0.111] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44343625	44343626	rs12484795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:6)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484795-T	NR	7E-27		0.1209	[0.099-0.143] unit decrease	Illumina [6720657] (imputed)	N
923	chr22	44343625	44343626	rs12484795	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol(56:5)_[M+NH4]1+ levels	5,662 Pakistani ancestry individuals	NA	22q13.31		rs12484795-C	NR	7E-27		0.08	[0.065-0.095] unit increase	Illumina [6720657] (imputed)	N
923	chr22	44343625	44343626	rs12484795	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	22q13.31	PNPLA3	rs12484795-A	0.5689	7E-11	(East Asian)	0.039	[0.027-0.051] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
923	chr22	44354110	44354111	rs738491	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic fatty liver disease	902 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	22q13.31	SAMM50	rs738491-T	0.52	1E-18		1.6	[1.44-1.77]	Illumina [93606]	N
923	chr22	44355692	44355693	rs76015644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q13.31	NR	rs76015644-G	NR	2E-12		0.0599	[0.043-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr22	44355692	44355693	rs76015644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs76015644-G	NR	9E-19		0.0752	[0.059-0.092] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44355692	44355693	rs76015644	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs76015644-G	NR	5E-24		0.0858	[0.069-0.102] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44360000	44360001	rs117826724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs117826724-C	NR	2E-15		0.0744	[0.056-0.093] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44360000	44360001	rs117826724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs117826724-C	NR	1E-11		0.0636	[0.045-0.082] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44361496	44361497	rs5764430	34841290	Ghodsian N	2021-11-03	Cell Rep Med	Electronic health record-based genome-wide meta-analysis provides insights on the genetic architecture of non-alcoholic fatty liver disease.	Nonalcoholic fatty liver disease	8,434 European ancestry cases, 770,180 European ancestry controls	NA	22q13.31	SAMM50	rs5764430-?	NR	7E-12		0.1360267	[0.097-0.175] unit decrease	NR [6787908] (imputed)	N
923	chr22	44368121	44368122	rs3761472	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs3761472-G	NR	7E-13		0.140168	[0.1-0.18] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44368121	44368122	rs3761472	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	22q13.31		rs3761472-A	0.82	5E-8		0.0549	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
923	chr22	44368121	44368122	rs3761472	30718733	Moon S	2019-02-04	Sci Rep	The Korea Biobank Array: Design and Identification of Coding Variants Associated with Blood Biochemical Traits.	Alanine aminotransferase levels	6,949 Korean ancestry individuals	6,000 Korean ancestry individuals	22q13.31	SAMM50	rs3761472-G	0.157	7E-6		0.0362	[0.02-0.052] unit increase	Affymetrix [at least 805769] (imputed)	N
923	chr22	44377441	44377442	rs4823182	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	22q13.31	SAMM50	rs4823182-G	0.33574764315569	3E-10		0.0482	[0.033-0.063] unit increase	NR [5035015] (imputed)	N
923	chr22	44377998	44377999	rs2235776	26780889	Below JE	2016-01-19	Sci Rep	Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs.	Cholesterol, total	4,383 Mexican ancestry individuals	7,876 Latin American/Hispanic individuals,  European ancestry individuals (Global Lipids Genetics Consortium et al, 2013)	22q13.31	SAMM50	rs2235776-C	NR	3E-8		0.026	[0.016-0.036] unit increase	Affymetrix [at least 370268] (imputed)	N
923	chr22	44379564	44379565	rs2294922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	22q13.31		rs2294922-G	0.792122	6E-9		0.028714	[0.019-0.038] unit increase	NR [11722792] (imputed)	N
923	chr22	44379564	44379565	rs2294922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	22q13.31		rs2294922-G	0.792122	2E-8		0.0279289	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
923	chr22	44379564	44379565	rs2294922	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	22q13.31		rs2294922-G	0.792208	1E-11		0.0337963	[0.024-0.044] unit decrease	NR [11722792] (imputed)	N
923	chr22	44383616	44383617	rs6006469	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	22q13.31		rs6006469-?	NR	2E-10		0.00594817	[0.0041-0.0078] unit decrease	NR [NR]	N
923	chr22	44386280	44386281	rs7587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_58:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs7587-T	NR	3E-10		0.113649	[0.078-0.149] unit decrease	Affymetrix [87696910] (imputed)	N
923	chr22	44386280	44386281	rs7587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:7_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs7587-T	NR	2E-10		0.113349	[0.079-0.148] unit decrease	Affymetrix [87696910] (imputed)	N
923	chr22	44386280	44386281	rs7587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs7587-T	NR	7E-14		0.128674	[0.095-0.162] unit decrease	Affymetrix [87696910] (imputed)	N
923	chr22	44386280	44386281	rs7587	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Diacylglycerol_38:5_[M+H-H2O]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs7587-T	NR	1E-14		0.0767797	[0.057-0.096] unit decrease	Affymetrix [87696910] (imputed)	N
923	chr22	44386280	44386281	rs7587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	22q13.31	NR	rs7587-T	NR	1E-17		0.0243	[0.019-0.03] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44386280	44386281	rs7587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs7587-T	NR	2E-43		0.0394	[0.034-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr22	44386280	44386281	rs7587	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs7587-T	NR	2E-45		0.0402	[0.035-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
923	chr22	44391685	44391686	rs2143571	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Triacylglycerol_56:6_[M+NH4]1+ levels	13,814 British ancestry individuals	NA	22q13.31		rs2143571-A	NR	4E-10		0.116522	[0.08-0.153] unit increase	Affymetrix [87696910] (imputed)	N
923	chr22	44391685	44391686	rs2143571	29385134	Kawaguchi T	2018-01-31	PLoS One	Risk estimation model for nonalcoholic fatty liver disease in the Japanese using multiple genetic markers.	Nonalcoholic steatohepatitis-derived hepatocellular carcinoma	58 Japanese ancestry cases, 7,672 Japanese ancestry controls	NA	22q13.31	SAMM50	rs2143571-A	0.43	9E-7		2.7	[1.82-4.0]	Illumina [93606]	N
923	chr22	44391685	44391686	rs2143571	29271184	Chung GE	2017-12-26	Gut Liver	Genetic Polymorphisms of PNPLA3 and SAMM50 Are Associated with Nonalcoholic Fatty Liver Disease in a Korean Population.	Nonalcoholic fatty liver disease	1,593 East Asian ancestry cases, 2,816 East Asian ancestry controls	744 East Asian ancestry cases, 1,137 East Asian ancestry controls	22q13.31	SAMM50	rs2143571-A	0.395	2E-11		1.437	[1.292-1.597]	Affymetrix [584061]	N
923	chr22	44391685	44391686	rs2143571	22719876	Kawaguchi T	2012-06-14	PLoS One	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NA	22q13.31	SAMM50	rs2143571-A	0.458	6E-7		1.47	[1.27-1.72]	Illumina [484751]	N
923	chr22	44394401	44394402	rs2073080	22719876	Kawaguchi T	2012-06-14	PLoS One	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NA	22q13.31	PARVB	rs2073080-T	0.458	8E-7		1.47	[1.26-1.71]	Illumina [484751]	N
923	chr22	44406678	44406679	rs141923341	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	22q13.31	SAMM50	rs141923341-T	0.0140251569673894	7E-6	(G_Ruminococcus_HB)	1.24799	[0.7-1.79] unit decrease	Illumina [7711310] (imputed)	N
923	chr22	44407558	44407559	rs75098626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	22q13.31	NR	rs75098626-A	NR	3E-35		0.0722	[0.061-0.084] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44407558	44407559	rs75098626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	22q13.31	NR	rs75098626-A	NR	3E-27		0.063	[0.052-0.074] unit increase	Affymetrix [9000000] (imputed)	N
923	chr22	44422637	44422638	rs11914048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs11914048-C	0.190112	2E-10				Affymetrix, Illumina [23467995] (imputed)	N
923	chr22	44422637	44422638	rs11914048	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.31	NR	rs11914048-C	0.197452	9E-12		0.01638	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
923	chr22	44424107	44424108	rs6006622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q13.31		rs6006622-T	NR	4E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
923	chr22	44428545	44428546	rs10483221	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.31	PARVB	rs10483221-T	0.186601	3E-9		0.017003214	[0.011-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
924	chr22	44455172	44455173	rs12485168	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.31		rs12485168-?	NR	8E-9				NR [~ 8900000] (imputed)	N
924	chr22	44471122	44471123	rs77206040	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	22q13.31	NR	rs77206040-?	NR	4E-6	(Native Hawaiian)	1.2408	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
924	chr22	44476063	44476064	rs130318	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		22q13.31	PARVB	rs130318-?	NR	4E-7		1.7	[NR]	Illumina [up to 810372] (imputed)	N
924	chr22	44476063	44476064	rs130318	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer (hypertension) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		22q13.31	PARVB	rs130318-?	NR	4E-6		1.72	[NR]	Illumina [up to 810372] (imputed)	N
924	chr22	44494316	44494317	rs5764525	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.31	PARVG	rs5764525-?	NR	1E-6	(CE 16:0)	0.25913006	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
924	chr22	44499342	44499343	rs9614326	29915124	Marini S	2018-06-18	Stroke	17p12 Influences Hematoma Volume and Outcome in Spontaneous Intracerebral Hemorrhage.	Hematoma volume in lobar spontaneous intracerebral hemorrhage	228 European ancestry cases	71 European ancestry cases	22q13.31	NR	rs9614326-A	0.97	6E-8		1.58	[1.01-2.15] unit increase	Illumina [7567631] (imputed)	N
924	chr22	44502931	44502932	rs16991498	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-centromere-positive)	671 European ancestry cases, 3,466 European ancestry controls, 21 African American cases, 260 African American controls	NA	22q13.31	PARVB	rs16991498-?	NR	8E-7	(EA)			Illumina [126270]	N
924	chr22	44503196	44503197	rs6006647	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Phospholipid levels in very large VLDL meal response (LMM)	11,410 individuals	NA	22q13.31		rs6006647-T	0.293504	3E-8		0.0552404	[0.038-0.073] unit decrease	Illumina [7568622] (imputed)	N
924	chr22	44507871	44507872	rs62227671	30456811	Moss LC	2018-11-19	Genet Epidemiol	Using Bayes model averaging to leverage both gene main effects and G x  E interactions to identify genomic regions in genome-wide association studies.	Asthma x air pollution interaction (2df)	606 Hispanic cases, 792 Hispanic controls, 643 European ancestry cases, 959 European ancestry controls	NA	22q13.31	NR	rs62227671-?	NR	6E-9				NR [6212909] (imputed)	N
924	chr22	44523161	44523162	rs133911	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Lewy body disease	up to 3,526 individuals	NA	22q13.31	PARVB	rs133911-G	0.7038	7E-6	(Ordinal I)	0.3047	[0.17-0.44] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
924	chr22	44523906	44523907	rs62227724	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	22q13.31	NR	rs62227724-?	NR	3E-8		0.092149	[0.059-0.125] unit increase	Affymetrix [9658292] (imputed)	N
924	chr22	44526104	44526105	rs75617873	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		22q13.31	PARVB	rs75617873-?	0.03	5E-7		0.17	unit decrease	Illumina [NR] (imputed)	N
924	chr22	44561286	44561287	rs5764106	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.31	NR	rs5764106-C	0.229970760801782	5E-6	(IGP9)	0.1865	[0.11-0.27] unit decrease	Illumina [~ 2500000] (imputed)	N
924	chr22	44561286	44561287	rs5764106	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.31	NR	rs5764106-C	0.229970760801782	2E-6	(IGP49)	0.1956	[0.12-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
925	chr22	44596084	44596085	rs139156	25866641	Xu W	2015-03-19	Biomark Res	A genome wide association study on Newfoundland colorectal cancer patients' survival outcomes.	Survival in colon cancer	334 European ancestry cases	NA	22q13.31	PARVG	rs139156-?		7E-6	(overall survival)	2.76	[1.77-4.29]	Illumina [729737]	N
925	chr22	44606771	44606772	rs139198	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	22q13.31	PARVG	rs139198-C	0.22	5E-6		3.036	[1.74-4.33] unit increase	Illumina [NR] (imputed)	N
925	chr22	44640607	44640608	rs737263	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	22q13.31	KIAA1644	rs737263-?	NR	9E-8		2.12		Illumina [6778521] (imputed)	N
925	chr22	44642733	44642734	rs4999351	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	22q13.31	NR	rs4999351-T	0.465	9E-6		0.2	[0.11-0.29] unit increase	Illumina [~ 6600000] (imputed)	N
926	chr22	44697741	44697742	rs6519834	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q13.31	NR	rs6519834-?	NR	3E-6		0.4	[0.3-0.53]	Illumina [539000] (imputed)	N
926	chr22	44698802	44698803	rs7510583	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	22q13.31	KIAA1644	rs7510583-G	0.290195	3E-6		0.034708	[0.02-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
926	chr22	44718961	44718961	rs201681753	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.31	NR	rs201681753-CCCAT	0.0337	3E-6	(EA)	0.1129	[0.065-0.16] unit decrease	Illumina [~ 11800000] (imputed)	N
926	chr22	44738405	44738406	rs6519897	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		22q13.31	intergenic	rs6519897-G	0.275882	6E-6		0.388262	[0.22-0.55] unit increase	Illumina [640625] (imputed)	N
926	chr22	44784209	44784212	rs199832865	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	22q13.31	NR	rs199832865-TAGA		2E-6		0.7659	[0.45-1.08] SD units decrease	NR [10700000] (imputed)	N
926	chr22	44791605	44791606	rs5766108	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.31	NR	rs5766108-?	NR	5E-6		4.567	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
926	chr22	44823094	44823095	rs5766499	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	22q13.31	NR	rs5766499-A	0.661674	8E-6		1.1402508	[1.08-1.2]	Affymetrix [7791636] (imputed)	N
927	chr22	44833081	44833082	rs737724	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	22q13.31	LDOC1L	rs737724-G	NR	2E-7		10.6228	[6.68-14.56] unit decrease	Illumina [6097251] (imputed)	N
927	chr22	44891246	44891247	rs131155	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	22q13.31	LDOC1L	rs131155-G	0.4718	8E-10		0.012432522	[0.0085-0.0164] unit decrease	Affymetrix [up to 18485882] (imputed)	N
927	chr22	44917645	44917646	rs5765717	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.31	Intergenic	rs5765717-T	0.4866	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
927	chr22	44922274	44922275	rs4407350	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.31	LDOC1L	rs4407350-A	NR	1E-8		0.016676998	[0.011-0.022] unit decrease	Affymetrix [NR]	N
928	chr22	44968529	44968530	rs138597	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (time)	9,617 European ancestry individuals	NA	22q13.31	LOC388910	rs138597-G	NR	7E-6		0.123	[0.070-0.176] unit increase	Illumina [628922]	N
928	chr22	45011760	45011761	rs4823246	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	22q13.31	intergenic	rs4823246-G	NR	3E-6		0.1	[0.059-0.141] unit decrease	Illumina [628922]	N
929	chr22	45150658	45150659	rs5765956	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	22q13.31	NR	rs5765956-?	NR	2E-6	(Meta-All, NSCL/P)			NR [497084]	N
929	chr22	45162116	45162117	rs4823371	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip and palate	205 Asian ancestry cases, 315 European ancestry cases, 692 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q13.31	NR	rs4823371-?	NR	5E-6		1.89	[1.68-2.13]	Illumina [539000] (imputed)	N
929	chr22	45171480	45171481	rs3788621	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	22q13.31	PRR5-ARHGAP8, ARHGAP8	rs3788621-T	0.06383	9E-7		1.51808	[0.93-2.11] unit increase	NR [7263501] (imputed)	N
929	chr22	45183013	45183014	rs16992796	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	22q13.31	PRR5, ARHGAP8	rs16992796-G	0.05	3E-6		0.236	[NR] unit decrease	Illumina [634583]	N
930	chr22	45245892	45245893	rs766166452	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	22q13.31	PRR5-ARHGAP8, ARHGAP8	rs766166452-T	0.9986	4E-6		0.681	[0.39-0.97] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
930	chr22	45245892	45245893	rs766166452	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	22q13.31	PRR5-ARHGAP8, ARHGAP8	rs766166452-T	0.9986	9E-7		0.7302	[0.44-1.02] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
930	chr22	45251810	45251811	rs726170	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour in bipolar disorder	398 European ancestry bipolar disorder cases, 1,231 European ancestry bipolar disorder controls	NA	22q13.31	PRR5, ARHGAP8	rs726170-T	0.12	3E-8		1.923077	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
930	chr22	45253894	45253895	rs6006893	24882193	Winham SJ	2014-04-19	J Affect Disord	Bipolar disorder with comorbid binge eating history: a genome-wide association study implicates APOB.	Binge eating behaviour in bipolar disorder	206 European ancestry cases with binge eating behavior, 723 European ancestry cases without binge eating behavior	70 European ancestry cases with binge eating behavior, 758 European ancestry cases without binge eating behavior	22q13.31	PRR5	rs6006893-?	NR	9E-7		1.99	[NR]	Affymetrix [8466825] (imputed)	N
930	chr22	45255618	45255619	rs140395831	27777418	Wong ML	2016-10-25	Mol Psychiatry	The PHF21B gene is associated with major depression and modulates the stress response.	Major depressive disorder	203 Mexican American cases, 196 Mexican American controls	NA	22q13.31	PRR5-ARHGAP8	rs140395831-?	NR	3E-10				Illumina [83898]	N
930	chr22	45262413	45262414	rs6007358	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.31	NR	rs6007358-A	0.01045	2E-8	(ECI1)	0.3673	NR unit increase	Illumina [1671387] (imputed)	N
930	chr22	45274545	45274546	rs190040215	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cerebral amyloid deposition in APOEe4 non-carriers (PET imaging)	370 European and other ancestry APOEe4 non-carriers	NA	22q13.31	PRR5-ARHGAP8, PHF21B	rs190040215-T	0.01	2E-7		0.3028	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
930	chr22	45327147	45327148	rs117158375	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	22q13.31	PHF21B	rs117158375-T	NR	3E-6		1.122	[1.069- 1.178]	Illumina [6740241] (imputed)	N
931	chr22	45380888	45380889	rs79661460	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	22q13.31	PHF21B	rs79661460-G	0.9311014	8E-6		0.337636	[0.19-0.49] unit decrease	Illumina [6969139] (imputed)	N
931	chr22	45415896	45415897	rs140555	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	22q13.31	PHF21B	rs140555-T	NR	2E-6		0.09	[0.051-0.129] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
931	chr22	45436765	45436766	rs132043	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	22q13.31	PHF21B	rs132043-C	0.64	9E-6	(Mean vigilance)	0.1399	[0.078-0.201] unit decrease	Affymetrix [8042262] (imputed)	N
932	chr22	45545399	45545400	rs80428	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.31	NR	rs80428-C	0.678368	1E-12		0.014587	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
932	chr22	45559996	45559997	rs132850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs132850-C	0.699944	2E-12				Affymetrix, Illumina [24246363] (imputed)	N
932	chr22	45559996	45559997	rs132850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs132850-C	0.701849	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
932	chr22	45560706	45560707	rs132853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q13.31		rs132853-C	NR	4E-9		0.0131	[0.0088-0.0174] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
932	chr22	45570104	45570105	rs132887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.31		rs132887-?	NR	6E-8				NR [~ 8900000] (imputed)	N
932	chr22	45570243	45570244	rs132889	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.31	NUP50	rs132889-G	0.866303	3E-9		0.019461	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
932	chr22	45580158	45580159	rs2673085	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.31	NR	rs2673085-C	0.675575	3E-12		0.013455	[0.0097-0.0172] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
933	chr22	45622013	45622014	rs6007506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	22q13.31		rs6007506-?	NR	7E-27				NR [~ 8900000] (imputed)	N
933	chr22	45622013	45622014	rs6007506	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Low tan response	46,768 European ancestry low tanning cases, 74,528 European ancestry moderate and high tanning controls	15,547 European ancestry low tanning  cases, 39,835 European moderate and high tanning ancestry controls	22q13.31	NR	rs6007506-T	NR	1E-13		0.068	[0.019-0.117] unit decrease	Affymetrix [8351141] (imputed)	N
933	chr22	45622683	45622684	rs5766565	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	22q13.31	KIAA0930	rs5766565-A	0.646705	2E-10				Affymetrix, Illumina [NR] (imputed)	N
933	chr22	45622683	45622684	rs5766565	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	22q13.31	KIAA0930	rs5766565-A	0.6467	1E-9		1.0632	NR	Affymetrix, Illumina [NR] (imputed)	N
933	chr22	45630661	45630662	rs2294196	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	22q13.31	KIAA0930	rs2294196-?	NR	2E-9		1.0469012	NR	Affymetrix [9154080] (imputed)	N
933	chr22	45631392	45631393	rs5766576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q13.31		rs5766576-?	NR	3E-8				NR [~ 8900000] (imputed)	N
933	chr22	45632527	45632528	rs5766582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	22q13.31	KIAA0930	rs5766582-T	0.474631	2E-20		0.020704396	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr22	45632527	45632528	rs5766582	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	22q13.31	NR	rs5766582-T	0.474655	2E-16		0.016936	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
933	chr22	45638534	45638535	rs5766584	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs5766584-T	0.532803	1E-13				Affymetrix, Illumina [19905671] (imputed)	N
933	chr22	45638795	45638796	rs5765229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	22q13.31	KIAA0930	rs5765229-T	0.495939	3E-16		0.018306285	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
933	chr22	45638795	45638796	rs5765229	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	22q13.31	KIAA0930	rs5765229-C	0.515845	3E-12				Affymetrix, Illumina [NR] (imputed)	N
933	chr22	45668011	45668012	rs58667	23541324	Li X	2013-03-27	J Allergy Clin Immunol	Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.	Pulmonary function in asthmatics	1,544 European ancestry individuals		22q13.31	UPK3A	rs58667-A	0.38	4E-7	(ppFEV1)	0.18	[NR] unit increase	Illumina [369771]	N
933	chr22	45696694	45696695	rs5766632	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	22q13.31	UPK3A, FAM118A	rs5766632-?	NR	3E-14		0.022144064	[0.016-0.028] unit increase	Illumina [27896057] (imputed)	N
933	chr22	45698148	45698149	rs9615099	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	22q13.31	NR	rs9615099-T	NR	1E-8		1.043	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
933	chr22	45713557	45713558	rs9615106	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	22q13.31	FAM118A	rs9615106-T	0.1273	2E-6		0.044	[0.026-0.062] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
933	chr22	45714936	45714937	rs6006984	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	22q13.31		rs6006984-C	NR	5E-7		0.00600542	[0.0036-0.0084] years increase	NR [7400000] (imputed)	N
933	chr22	45714936	45714937	rs6006984	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	22q13.31		rs6006984-C	NR	2E-8		0.00435034	[0.0028-0.0059] years decrease	NR [7400000] (imputed)	N
933	chr22	45714936	45714937	rs6006984	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	22q13.31		rs6006984-C	NR	2E-10		0.00631944	[0.0044-0.0083] years decrease	NR [7400000] (imputed)	N
933	chr22	45714936	45714937	rs6006984	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	22q13.31		rs6006984-C	NR	2E-14		0.027155422	[0.02-0.034] years increase	NR [7400000] (imputed)	N
933	chr22	45723319	45723320	rs6006987	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.31		rs6006987-A	0.29	2E-15		7.92	z score increase	Affymetrix [9061022] (imputed)	N
933	chr22	45723319	45723320	rs6006987	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.31	NR	rs6006987-A	0.2726	3E-8				NR [9056863] (imputed)	N
933	chr22	45724998	45724999	rs736037	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	22q13.31	FAM118A, FBLN1	rs736037-A	0.2861	2E-6		1.08	[1.04-1.11]	Affymetrix, Illumina [11353757] (imputed)	N
933	chr22	45724998	45724999	rs736037	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Colon cancer	32,002 European ancestry cases, 64,159 European ancestry controls	NA	22q13.31	FAM118A, FBLN1	rs736037-A	0.286	3E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [11928745] (imputed)	N
933	chr22	45725275	45725276	rs2350628	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.31		rs2350628-A	0.28	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
933	chr22	45725391	45725392	rs742013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	22q13.31		rs742013-?	NR	2E-17				NR [~ 8900000] (imputed)	N
933	chr22	45725599	45725600	rs736702	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 30)	3,566 European ancestry individuals	4,680 European ancestry individuals	22q13.31		rs736702-G	0.253676471	2E-8				Illumina [7417619] (imputed)	N
933	chr22	45727564	45727565	rs1569414	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	22q13.31	FAM118A	rs1569414-T	0.73	1E-11		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
933	chr22	45727564	45727565	rs1569414	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	22q13.31	FAM118A	rs1569414-T	0.73	1E-9		0.038	[0.026-0.05] unit decrease	Affymetrix [at least 8900000] (imputed)	N
933	chr22	45727564	45727565	rs1569414	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	FAM118A	rs1569414-T	0.743768	1E-19		0.0191834	[0.015-0.023] unit increase	NR [13737936] (imputed)	N
933	chr22	45727564	45727565	rs1569414	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.31		rs1569414-?	NR	9E-16				NR [~ 8900000] (imputed)	N
933	chr22	45727564	45727565	rs1569414	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.31		rs1569414-?	NR	8E-14		0.017623	[0.013-0.022] unit increase	Affymetrix [20259828] (imputed)	N
933	chr22	45727564	45727565	rs1569414	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	22q13.31	FAM118A	rs1569414-?	NR	6E-10	(subset analysis)			Illumina [130052]	N
933	chr22	45728369	45728370	rs6007594	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q13.31		rs6007594-A	0.2621	3E-14		0.12414442	[0.089-0.159] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
933	chr22	45728369	45728370	rs6007594	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	22q13.31	FAM118A	rs6007594-G	0.7356	6E-10		1.025315		Affymetrix [11880941] (imputed)	N
933	chr22	45728369	45728370	rs6007594	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q13.31	NR	rs6007594-A	0.258838	4E-27		0.0380662	[0.031-0.045] unit decrease	NR [19129689] (imputed)	N
933	chr22	45728633	45728633	rs111420586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	22q13.31		rs111420586-CTT	NR	4E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
933	chr22	45731758	45731759	rs2205661	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	22q13.31		rs2205661-C	NR	2E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
933	chr22	45732327	45732328	rs11704481	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q13.31	FAM118A	rs11704481-G	0.403014	1E-8		0.015216	[0.01-0.02] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
933	chr22	45735605	45735606	rs998706	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Peanut allergy (maternal genetic effects)	301 European ancestry complete and incomplete trios	NA	22q13.31	FAM118A, SMC1B	rs998706-?	NR	4E-6				Illumina [NR]	N
933	chr22	45737480	45737481	rs6007600	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	22q13.31		rs6007600-C	NR	4E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
933	chr22	45738486	45738487	rs2294203	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	22q13.31		rs2294203-A	0.6796	3E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
934	chr22	45745228	45745229	rs9614460	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	22q13.31		rs9614460-G	NR	2E-8		0.00652075	[0.0042-0.0089] years increase	NR [7400000] (imputed)	N
934	chr22	45745228	45745229	rs9614460	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	22q13.31		rs9614460-G	NR	1E-6		0.00460925	[0.0027-0.0065] years decrease	NR [7400000] (imputed)	N
934	chr22	45746152	45746152	rs35156883	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	22q13.31		rs35156883-A	NR	2E-8		1.1	[1.06-1.13]	NR [13810676] (imputed)	N
934	chr22	45746490	45746491	rs9614461	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q13.31	NR	rs9614461-?	NR	6E-7		0.0767	[0.047-0.107] unit decrease	Illumina [at least 560000] (imputed)	N
934	chr22	45749965	45749966	rs61735519	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	22q13.31	SMC1B	rs61735519-C	0.058	6E-6		0.0629	[0.036-0.09] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
934	chr22	45809697	45809698	rs2272805	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.31	RIBC2	rs2272805-A	0.1461	8E-7		0.0501	[0.03-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
934	chr22	45809697	45809698	rs2272805	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.31	RIBC2	rs2272805-A	0.1461	8E-7		0.0501	[0.03-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
934	chr22	45815575	45815576	rs112587279	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	22q13.31	RIBC2	rs112587279-G	0.1608	6E-6				Affymetrix, Illumina [9900000] (imputed)	N
934	chr22	45815575	45815576	rs112587279	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	22q13.31	RIBC2	rs112587279-G	0.1608	7E-6		0.0361	[0.02-0.052] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
934	chr22	45815575	45815576	rs112587279	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	22q13.31	RIBC2	rs112587279-G	0.1608	1E-6		0.0381	[0.023-0.054] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
934	chr22	45815575	45815576	rs112587279	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	22q13.31	RIBC2	rs112587279-G	0.1608	1E-6		0.0376	[0.022-0.053] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
934	chr22	45815575	45815576	rs112587279	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	22q13.31	RIBC2	rs112587279-G	0.1608	6E-6		0.036	[0.02-0.052] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
934	chr22	45817387	45817388	rs5765339	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.31	FBLN1	rs5765339-C	0.40265625	6E-8	(FBLN1, 10819_108_3)	0.13177118	[0.084-0.179] unit decrease	Illumina [> 1000000] (imputed)	N
934	chr22	45838816	45838817	rs9614670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs9614670-?	NR	1E-34				NR [~ 8900000] (imputed)	N
934	chr22	45849555	45849556	rs11703125	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FBLN1	5,335 Icelandic ancestry individuals	NA	22q13.31		rs11703125-A	0.1917	6E-12		0.144752	[0.1-0.19] unit decrease	Illumina [7506463] (imputed)	N
935	chr22	45879431	45879432	rs738222	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.31	NR	rs738222-?	NR	8E-40				Affymetrix [NR]	N
935	chr22	45929199	45929200	rs11702924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q13.31		rs11702924-?	NR	1E-8				NR [~ 8900000] (imputed)	N
935	chr22	45936319	45936320	rs2238823	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	22q13.31	FBLN1	rs2238823-A	NR	4E-6		5.626	unit decrease	Affymetrix [4198245] (imputed)	N
935	chr22	45937020	45937021	rs141878091	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	22q13.31	FBLN1	rs141878091-A	0.01	3E-6		10.73	[6.24-15.22] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
935	chr22	45961903	45961904	rs1985671	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	22q13.31	FBLN1	rs1985671-?	NR	2E-8	(Hyperthymic)	1.06	[NR] unit decrease	Affymetrix [703012]	N
935	chr22	45970950	45970951	rs142453718	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FBLN1	rs142453718-?	NR	7E-13		1.68403	[NR] unit decrease	Affymetrix [NR] (imputed)	N
935	chr22	45985370	45985371	rs79930833	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	22q13.31	NR	rs79930833-T	0.9843	4E-6		1.0072	[0.58-1.44] unit decrease	Illumina [NR] (imputed)	N
935	chr22	45992216	45992217	rs5765524	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q13.31	FBLN1	rs5765524-G	0.459	3E-14		0.02786848	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
935	chr22	45996297	45996298	rs13268	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q13.31	NR	rs13268-A	0.97457	9E-14		0.0455362	[0.034-0.058] unit increase	Affymetrix [15000001]	N
935	chr22	45996297	45996298	rs13268	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	22q13.31	FBLN1	rs13268-?	NR	4E-10		0.0511	[0.037-0.065] unit decrease	Affymetrix [5701386] (imputed)	N
935	chr22	45999937	45999938	rs4823308	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q13.31	FBLN1	rs4823308-A		2E-25		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
935	chr22	45999937	45999938	rs4823308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.31		rs4823308-?	NR	4E-29				NR [~ 8900000] (imputed)	N
935	chr22	45999937	45999938	rs4823308	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q13.31	CTA-941F9.9, FBLN1	rs4823308-A	0.461	1E-13		0.02658591	[0.02-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
935	chr22	45999937	45999938	rs4823308	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q13.31	CTA-941F9.9, FBLN1	rs4823308-A	0.4609	1E-15		0.02869059	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
935	chr22	46004022	46004023	rs4823309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.31	CTA-941F9.9	rs4823309-T	0.447629	1E-24		0.023320459	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr22	46004022	46004023	rs4823309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.31	CTA-941F9.9	rs4823309-T	0.447646	7E-32		0.026723595	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr22	46004022	46004023	rs4823309	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.31	CTA-941F9.9	rs4823309-T	0.447624	7E-34		0.027636185	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
936	chr22	46008463	46008464	rs9626407	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	22q13.31	FBLN1	rs9626407-A	0.04	2E-6		0.35	[0.21-0.49] unit decrease	Illumina [14638245] (imputed)	N
936	chr22	46025041	46025042	rs9614727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	22q13.31		rs9614727-A	0.355858	3E-13		0.0239627	[0.018-0.03] unit increase	Illumina [13479135] (imputed)	N
936	chr22	46025041	46025042	rs9614727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	22q13.31		rs9614727-A	0.355992	4E-14		0.0243878	[0.018-0.031] unit increase	Illumina [13478948] (imputed)	N
936	chr22	46025041	46025042	rs9614727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	22q13.31		rs9614727-A	0.355885	8E-16		0.0264116	[0.02-0.033] unit increase	Illumina [13478961] (imputed)	N
936	chr22	46025041	46025042	rs9614727	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin	108,769 Japanese ancestry individuals	NA	22q13.31	LINC01589, ATXN10	rs9614727-?	NR	3E-8		0.02473	[0.016-0.033] unit increase novel	Illumina [6108953] (imputed)	N
936	chr22	46025041	46025042	rs9614727	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hematocrit	108,757 Japanese ancestry individuals	NA	22q13.31	LINC01589, ATXN10	rs9614727-?	NR	2E-9		0.02666	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
936	chr22	46025303	46025304	rs9614729	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	22q13.31	NR	rs9614729-A	0.64665	8E-11		0.025805	[0.018-0.034] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
936	chr22	46027469	46027470	rs191045977	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	22q13.31	NR	rs191045977-C		9E-6		0.4756	[0.26-0.69] SD units increase	NR [10700000] (imputed)	N
936	chr22	46037047	46037048	rs134837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	22q13.31		rs134837-?	NR	3E-8				NR [~ 8900000] (imputed)	N
936	chr22	46040995	46040996	rs2351088	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q13.31	NR	rs2351088-?	NR	8E-8		0.0656	[0.042-0.09] unit increase	Illumina [at least 560000] (imputed)	N
936	chr22	46054304	46054305	rs764821366	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	22q13.31		rs764821366-T	NR	5E-6		0.01533		Affymetrix, Illumina [62056310] (imputed)	N
936	chr22	46080250	46080251	rs79016257	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	ATXN10	rs79016257-G	0.956938	3E-15		0.0367188	[0.028-0.046] unit decrease	NR [13737936] (imputed)	N
936	chr22	46101805	46101806	rs77114534	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.31		rs77114534-?	NR	2E-15		0.0412245	[0.031-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
936	chr22	46114243	46114244	rs2071852	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	22q13.31	NR	rs2071852-?	NR	4E-6				Illumina [at least 7383741] (imputed)	N
936	chr22	46119432	46119433	rs138158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.31		rs138158-?	NR	1E-11				NR [~ 8900000] (imputed)	N
937	chr22	46148150	46148151	rs117183008	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.31	ATXN10	rs117183008-A	0.0134	5E-7		0.1671	[0.1-0.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
937	chr22	46148150	46148151	rs117183008	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	22q13.31	ATXN10	rs117183008-A	0.0134	5E-7		0.1671	[0.1-0.23] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
937	chr22	46148150	46148151	rs117183008	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	22q13.31	ATXN10	rs117183008-A	0.0135	2E-6		0.1853	[0.11-0.26] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
937	chr22	46151120	46151121	rs9626436	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	ATXN10	rs9626436-C	0.870869	1E-11		0.0189309	[0.013-0.024] unit decrease	NR [13737936] (imputed)	N
937	chr22	46151120	46151121	rs9626436	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.31		rs9626436-?	NR	8E-11		0.0191863	[0.013-0.025] unit decrease	Affymetrix [20259828] (imputed)	N
937	chr22	46176674	46176675	rs11702966	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q13.31	NR	rs11702966-?	NR	3E-7		0.0616	[0.038-0.085] unit increase	Illumina [at least 560000] (imputed)	N
937	chr22	46199331	46199332	rs17653487	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.31	NR	rs17653487-?	NR	5E-32				Affymetrix [NR]	N
937	chr22	46214350	46214351	rs713978	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	22q13.31	NR	rs713978-?		3E-8				NR [7428630] (imputed)	N
937	chr22	46218440	46218441	rs9614789	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 18)	2,187 European ancestry individuals	NA	22q13.31	NR	rs9614789-C	0.4415	5E-6		0.1397	[0.08-0.2] unit decrease	Illumina [10677593] (imputed)	N
937	chr22	46235104	46235105	rs763010	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.31		rs763010-T	0.42	2E-10		6.35	z score increase	Affymetrix [9061022] (imputed)	N
937	chr22	46235104	46235105	rs763010	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.31	NR	rs763010-T	0.4161	1E-10				NR [9056863] (imputed)	N
937	chr22	46236424	46236425	rs136029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs136029-?	NR	2E-26				NR [~ 8900000] (imputed)	N
937	chr22	46238122	46238123	rs4823324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	22q13.31	NR	rs4823324-C	NR	2E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
937	chr22	46256941	46256942	rs201457759	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	22q13.31	WI2-85898F10.2	rs201457759-A	0.0095	9E-6		0.2699	[0.15-0.39] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
937	chr22	46264380	46264381	rs136047	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	22q13.31	ATXN10	rs136047-?	NR	2E-8		1.1266336	NR	Affymetrix [9154080] (imputed)	N
938	chr22	46275422	46275423	rs187145936	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.31	Intergenic	rs187145936-T	NR	6E-6	(men)	0.190073	[0.11-0.27] unit decrease	Illumina [13520550] (imputed)	N
938	chr22	46283296	46283297	rs28512361	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	22q13.31		rs28512361-A	NR	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR] (imputed)	N
938	chr22	46283296	46283297	rs28512361	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	22q13.31	intergenic	rs28512361-A	0.11	2E-8	(EA)	1.05	[1.02-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
938	chr22	46287127	46287128	rs139851596	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	22q13.31	Intergenic	rs139851596-G	NR	8E-6		0.0455971	[0.026-0.066] unit decrease	Illumina [13520550] (imputed)	N
938	chr22	46301367	46301368	rs9330799	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	22q13.31	WNT7B	rs9330799-A	0.53	4E-14		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
938	chr22	46305300	46305300	rs111798871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.31		rs111798871-AGGAT	0.341268	5E-20		0.021427812	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46309892	46309893	rs9697691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.31		rs9697691-G	0.342784	1E-19		0.021122258	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46309892	46309893	rs9697691	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.31		rs9697691-G	0.342779	3E-17		0.01996023	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46309892	46309893	rs9697691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q13.31	intergenic	rs9697691-G	0.3365	2E-11		0.02529216	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr22	46309892	46309893	rs9697691	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q13.31	intergenic	rs9697691-G	0.3365	5E-12		0.02574407	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr22	46313617	46313618	rs28637892	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	22q13.31	WNT7B	rs28637892-T	0.215	4E-9		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
938	chr22	46333453	46333454	rs59614521	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	22q13.31	WNT7B	rs59614521-T	NR	8E-6		0.222044	[0.12-0.32] unit increase	Illumina [at least 950000] (imputed)	N
938	chr22	46340639	46340640	rs10448576	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.31	WNT7B	rs10448576-T	0.053428	3E-10		0.031405997	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr22	46353045	46353046	rs55769859	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Body mass index	361 Martu Australian Aboriginal ancestry individuals	NA	22q13.31	WNT7B	rs55769859-?	NR	5E-6		1.37	[0.78-1.96] unit increase	Illumina [1075436] (imputed)	N
938	chr22	46363738	46363739	rs10453441	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	22q13.31	NR	rs10453441-A	0.597971	4E-8		0.0115347	[0.0074-0.0157] unit decrease	NR [NR]	N
938	chr22	46363738	46363739	rs10453441	29847655	Fan BJ	2018-05-01	Invest Ophthalmol Vis Sci	Family-Based Genome-Wide Association Study of South Indian Pedigrees Supports WNT7B as a Central Corneal Thickness Locus.	Central corneal thickness	195 South Indian ancestry individuals from 15 families	1,520 Singaporean Indian individuals, 4,038 Mexican American individuals, 6,911 European ancestry individuals	22q13.31	WNT7B	rs10453441-G	NR	2E-11		3.11	[2.20-4.02] unit decrease	Illumina [1223314]	N
938	chr22	46363738	46363739	rs10453441	28171582	Gao X	2016-11-15	Hum Mol Genet	Genome-wide association study identifies WNT7B as a novel locus for central corneal thickness in Latinos.	Central corneal thickness	3,584 Latino individuals	931 Latino individuals	22q13.31	WNT7B	rs10453441-G	0.455	6E-9		4.51	[NR] unit decrease (initial cohort)	Illumina [576798] (imputed)	N
938	chr22	46363738	46363739	rs10453441	25823570	Miyake M	2015-03-31	Nat Commun	Identification of myopia-associated WNT7B polymorphisms provides insights into the mechanism underlying the development of myopia.	Corneal curvature	Up to 3,248 Japanese ancestry individuals	6,234 East Asian ancestry individuals, 2,007 European ancestry individuals	22q13.31	WNT7B	rs10453441-A	0.33	3E-40		0.051	[0.043-0.059] unit increase	Illumina [1773334] (imputed)	N
938	chr22	46364160	46364161	rs9330813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	22q13.31		rs9330813-A	NR	2E-45		0.0247	[0.021-0.028] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
938	chr22	46364160	46364161	rs9330813	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Pancreas volume	31,758 European ancestry individuals	NA	22q13.31	WNT7B	rs9330813-?	NR	1E-9		0.0491	NR L decrease	Affymetrix [9390170] (imputed)	N
938	chr22	46364160	46364161	rs9330813	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	22q13.31	WNT7B	rs9330813-A	0.3154	7E-15		0.016	[0.012-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
938	chr22	46364160	46364161	rs9330813	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs9330813-A	0.37573	1E-53				Affymetrix, Illumina [24653286] (imputed)	N
938	chr22	46364160	46364161	rs9330813	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	22q13.31	NR	rs9330813-G		5E-14		0.09	[0.07-0.11] unit increase	NR [NR]	N
938	chr22	46364160	46364161	rs9330813	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	22q13.31	WNT7B	rs9330813-A	0.31	1E-9		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
938	chr22	46364160	46364161	rs9330813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.31		rs9330813-?	NR	2E-47				NR [~ 8900000] (imputed)	N
938	chr22	46364160	46364161	rs9330813	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	22q13.31	NR	rs9330813-A	0.315701	1E-12		0.0236365	[0.017-0.03] unit decrease	NR [19129689] (imputed)	N
938	chr22	46364160	46364161	rs9330813	29847655	Fan BJ	2018-05-01	Invest Ophthalmol Vis Sci	Family-Based Genome-Wide Association Study of South Indian Pedigrees Supports WNT7B as a Central Corneal Thickness Locus.	Central corneal thickness	195 South Indian ancestry individuals from 15 families	4,038 Mexican American individuals, 4,806 European ancestry individuals	22q13.31	WNT7B	rs9330813-A	NR	2E-9		3.94	[2.66-5.23] unit decrease	Illumina [1223314]	N
938	chr22	46364160	46364161	rs9330813	29847655	Fan BJ	2018-05-01	Invest Ophthalmol Vis Sci	Family-Based Genome-Wide Association Study of South Indian Pedigrees Supports WNT7B as a Central Corneal Thickness Locus.	Central corneal thickness	195 South Indian ancestry individuals from 15 families	4,038 Mexican American individuals, 4,806 European ancestry individuals	22q13.31	WNT7B	rs9330813-A	NR	2E-7	(South Indian)	17.18	[10.82-23.54] unit decrease	Illumina [1223314]	N
938	chr22	46364160	46364161	rs9330813	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q13.31	WNT7B	rs9330813-A	0.3155	3E-16		0.0313183	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr22	46364160	46364161	rs9330813	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	22q13.31	WNT7B	rs9330813-A	0.3156	9E-19		0.0335448	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr22	46364190	46364191	rs9330814	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q13.31		rs9330814-T	NR	6E-43		0.0254	[0.022-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
938	chr22	46364190	46364191	rs9330814	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.31	WNT7B	rs9330814-T	0.316194	2E-33		0.028717631	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46364190	46364191	rs9330814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs9330814-T	0.382626	9E-57				Affymetrix, Illumina [24332387] (imputed)	N
938	chr22	46364190	46364191	rs9330814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.31	NR	rs9330814-T	0.316062	5E-52		0.032125	[0.028-0.036] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
938	chr22	46364190	46364191	rs9330814	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs9330814-T	0.37784	8E-62				Affymetrix, Illumina [24558453] (imputed)	N
938	chr22	46365136	46365137	rs570639864	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	WNT7B	rs570639864-G	0.997867	1E-13		0.140226	[0.1-0.18] unit increase	NR [13737936] (imputed)	N
938	chr22	46365136	46365137	rs570639864	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.31		rs570639864-?	NR	4E-13		0.143702	[0.1-0.18] unit increase	Affymetrix [20259828] (imputed)	N
938	chr22	46367143	46367144	rs28971325	34111113	Green HD	2021-06-10	PLoS Genet	A genome-wide association study identifies 5 loci associated with frozen shoulder and implicates diabetes as a causal risk factor.	Frozen shoulder	627,998 European ancestry individuals	NA	22q13.31	NR	rs28971325-A	0.233	8E-37		1.21	[1.25-1.18]	NR [16689279] (imputed)	N
938	chr22	46371078	46371079	rs73175081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	22q13.31	NR	rs73175081-G	0.315161	1E-49		0.031542	[0.027-0.036] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
938	chr22	46371078	46371079	rs73175081	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	22q13.31	NR	rs73175081-G	0.31527	6E-58		0.03421	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
938	chr22	46372967	46372968	rs75792643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	22q13.31	WNT7B	rs75792643-T	0.315552	2E-37		0.030504746	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46372967	46372968	rs75792643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	22q13.31	WNT7B	rs75792643-T	0.31557	1E-43		0.033034362	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
938	chr22	46375610	46375611	rs62654723	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.31		rs62654723-?	NR	4E-28		0.0302168	[0.025-0.036] unit decrease	Affymetrix [20259828] (imputed)	N
938	chr22	46376383	46376384	rs62228060	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	22q13.31		rs62228060-G	NR	5E-52		0.0276	[0.024-0.031] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
938	chr22	46376383	46376384	rs62228060	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	22q13.31	WNT7B	rs62228060-A		5E-40		0.031	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
938	chr22	46376383	46376384	rs62228060	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	22q13.31	WNT7B, CR536603.1	rs62228060-G	0.6753	4E-16		0.03096531	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr22	46377007	46377008	rs75159625	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	22q13.31	WNT7B, LOC730668	rs75159625-?	NR	8E-20		0.646	[0.5-0.79] unit decrease	Affymetrix [11100000] (imputed)	N
938	chr22	46381413	46381414	rs62228064	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	WNT7B	rs62228064-G	0.8529	7E-15		0.0206623	[0.015-0.026] unit decrease	NR [13737936] (imputed)	N
938	chr22	46381413	46381414	rs62228064	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.31		rs62228064-?	NR	2E-23				NR [~ 8900000] (imputed)	N
938	chr22	46383611	46383612	rs73175083	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	22q13.31	WNT7B, MIRLET7BHG, PPARA	rs73175083-?		1E-26				Affymetrix, Illumina [NR] (imputed)	N
939	chr22	46403714	46403715	rs28698504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q13.31		rs28698504-A	NR	4E-9		0.0126	[0.0083-0.0169] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
939	chr22	46411968	46411969	rs28520003	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	22q13.31		rs28520003-?	NR	3E-9				NR [~ 8900000] (imputed)	N
939	chr22	46411968	46411969	rs28520003	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	22q13.31	NR	rs28520003-G	0.68587	2E-7		0.0057744	[0.0036-0.0079] unit increase	Affymetrix [7736308] (imputed)	N
939	chr22	46411968	46411969	rs28520003	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	22q13.31	LINC00899	rs28520003-G	0.69	1E-8		1.025	[1.016-1.034]	Affymetrix [7736308] (imputed)	N
939	chr22	46411968	46411969	rs28520003	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	22q13.31	NR	rs28520003-A	0.32	1E-6		0.026	[0.016-0.036] unit decrease	Affymetrix [NR] (imputed)	N
939	chr22	46417322	46417323	rs28567375	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs28567375-?	NR	1E-19				NR [~ 8900000] (imputed)	N
939	chr22	46421841	46421842	rs6519955	21732829	Dolmans GH	2011-07-06	N Engl J Med	Wnt signaling and Dupuytren's disease.	Dupuytren's disease	856 European ancestry cases, 2,836 European ancestry controls	1,298 European ancestry cases, 7,136 European ancestry controls	22q13.31	RP11-398F12.1, WNT7B	rs6519955-A	0.47	3E-33		1.54	[1.44-1.65]	Illumina [234939]	N
939	chr22	46425431	46425432	rs8138989	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	22q13.31		rs8138989-?	NR	7E-10		0.0181	unit decrease	NR [NR]	N
939	chr22	46434685	46434686	rs4073601	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	22q13.31	LINC00899	rs4073601-G	0.14	7E-6		0.83	[0.76-0.90]	Affymetrix [4852957] (imputed)	N
939	chr22	46441979	46441980	rs7285579	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q13.31	LOC100271722	rs7285579-C	0.697743	3E-9		0.017277	[0.012-0.023] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
939	chr22	46442287	46442288	rs9627272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q13.31	NR	rs9627272-C	0.407	7E-12		0.00762052	[0.0054-0.0098] unit decrease	NR [9732723] (imputed)	N
939	chr22	46442287	46442288	rs9627272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	22q13.31	NR	rs9627272-C	0.407	2E-9		0.015473696	[0.01-0.021] unit decrease	NR [~ 10000000] (imputed)	N
939	chr22	46457722	46457723	rs62228096	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	22q13.31	NR	rs62228096-A	NR	4E-8		5.471	NR z score decrease	NR [NR]	N
939	chr22	46457722	46457723	rs62228096	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	22q13.31	hsa-mir-4763, LOC150381	rs62228096-A	0.3545	5E-9		0.025808511	[0.017-0.034] unit decrease	NR [NR]	N
939	chr22	46459131	46459132	rs7291412	28886342	Ng M	2017-09-07	Am J Hum Genet	A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis.	Dupuytren's disease	3,871 European ancestry cases, 4,686 European ancestry controls	4,041 European and unknown ancestry cases, 8,251 European and unknown ancestry controls	22q13.31	WNT7B, MIRLET7BHG	rs7291412-T	0.413	2E-30		1.288	[1.234-1.345]	Illumina [238825]	N
939	chr22	46459131	46459132	rs7291412	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	22q13.31	NR	rs7291412-T	0.3438	8E-6		0.0123	[0.0069-0.0177] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
939	chr22	46473844	46473845	rs35245641	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.31	NR	rs35245641-C	NR	2E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
939	chr22	46481622	46481623	rs17884691	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	22q13.31	NR	rs17884691-A	0.241	4E-8		0.013613835	[0.0088-0.0185] unit decrease	Affymetrix [10613246] (imputed)	N
939	chr22	46481622	46481623	rs17884691	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	22q13.31	NR	rs17884691-A	0.221	7E-9		0.01245443	[0.0082-0.0167] unit decrease	Affymetrix [NR] (imputed)	N
939	chr22	46481622	46481623	rs17884691	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	22q13.31	LOC400931	rs17884691-A	0.248	1E-8		0.0168	[0.011-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
939	chr22	46481622	46481623	rs17884691	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	22q13.31	PRR34	rs17884691-A	0.2475	9E-10		0.015824584	[0.011-0.021] unit decrease	Affymetrix [11514936] (imputed)	N
939	chr22	46482947	46482948	rs9626891	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	22q13.31		rs9626891-C	0.119902	9E-16		0.0349198	[0.026-0.043] unit increase	Illumina [13479924] (imputed)	N
939	chr22	46483916	46483917	rs58280444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	22q13.31		rs58280444-A	NR	8E-22		0.0418	[0.033-0.05] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
939	chr22	46483916	46483917	rs58280444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q13.31		rs58280444-A	NR	6E-33		0.0391	[0.033-0.046] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
939	chr22	46483916	46483917	rs58280444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	22q13.31		rs58280444-A	0.107225	3E-27		0.0375102	[0.031-0.044] unit increase	Illumina [13479295] (imputed)	N
939	chr22	46483916	46483917	rs58280444	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	22q13.31	MIRLET7BHG	rs58280444-?	NR	1E-28		0.053504996	[0.044-0.063] unit increase	Illumina [27896057] (imputed)	N
939	chr22	46500972	46500973	rs9626905	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	22q13.31	NR	rs9626905-C	0.363	4E-10		0.00707362	[0.0049-0.0093] unit decrease	NR [9732723] (imputed)	N
939	chr22	46518857	46518858	rs9616196	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL27	5,348 Icelandic ancestry individuals	NA	22q13.31		rs9616196-G	0.2968	9E-16		0.156604	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
939	chr22	46527238	46527239	rs135573	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	22q13.31		rs135573-?	NR	3E-6	(mucinous_all)	2.45		Illumina [11595112] (imputed)	N
940	chr22	46534944	46534944	rs201003839	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	22q13.31	PPARA	rs201003839-ACGGGC	NR	2E-12		0.1895	[0.14-0.24] SD units increase	NR [10700000] (imputed)	N
940	chr22	46536016	46536017	rs135563	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.31	NR	rs135563-T	0.510177	2E-9		0.00508848	[0.0034-0.0068] unit increase	Affymetrix [16582909] (imputed)	N
940	chr22	46536016	46536017	rs135563	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.31	NR	rs135563-T	0.510177	7E-6		0.0041323	[0.0023-0.006] unit increase	Affymetrix [16582965] (imputed)	N
940	chr22	46573650	46573651	rs4253788	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.31	NR	rs4253788-T	0.02439	3E-8	(TNC)	0.04244	NR unit increase	Illumina [1671387] (imputed)	N
940	chr22	46582837	46582838	rs9626751	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	22q13.31	PPARA	rs9626751-G	0.927	2E-6	(Mean vigilance)	0.2768	[0.16-0.39] unit decrease	Affymetrix [8042262] (imputed)	N
940	chr22	46611025	46611026	rs4253735	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	22q13.31	PPARA	rs4253735-G	0.023	4E-6		1.65	[1.28-2.12]	Affymetrix, Illumina [12148595] (imputed)	N
940	chr22	46615375	46615376	rs4253755	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	22q13.31	PPARA	rs4253755-A	NR	7E-10		0.0261572	[0.018-0.034] unit increase	Affymetrix [321016] (imputed)	N
940	chr22	46615375	46615376	rs4253755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q13.31	PPARA	rs4253755-A	0.128867	3E-21		0.03146991	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr22	46615375	46615376	rs4253755	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q13.31	PPARA	rs4253755-A	0.128869	2E-16		0.027435405	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
940	chr22	46615375	46615376	rs4253755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.31	NR	rs4253755-A	0.106212	5E-22				Affymetrix, Illumina [19872809] (imputed)	N
940	chr22	46615375	46615376	rs4253755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q13.31	NR	rs4253755-A	0.128441	5E-22		0.028911	[0.023-0.035] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
940	chr22	46615375	46615376	rs4253755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs4253755-?	NR	7E-14				NR [~ 8900000] (imputed)	N
940	chr22	46615375	46615376	rs4253755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.31		rs4253755-?	NR	8E-15				NR [~ 8900000] (imputed)	N
940	chr22	46619215	46619216	rs28669215	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (motor)	21,806 European ancestry individuals	NA	22q13.31	PPARA	rs28669215-T	0.0834	5E-8		0.116	[0.158-0.074] unit decrease	Illumina [11434023] (imputed)	N
940	chr22	46619869	46619870	rs60610697	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	22q13.31	PPARA	rs60610697-T	0.781996	2E-13		0.0179778	[0.013-0.023] unit decrease	Affymetrix [NR] (imputed)	N
940	chr22	46621646	46621650	rs201748472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	22q13.31		rs201748472-A	NR	6E-11		0.025	[0.018-0.032] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
940	chr22	46627602	46627603	rs4253772	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.31	PPARA	rs4253772-T	0.11	3E-8		0.031	[NR] unit increase	NR [NR] (imputed)	N
940	chr22	46627602	46627603	rs4253772	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	22q13.31	PPARA	rs4253772-T	0.11	1E-8		0.032	[NR] unit increase	NR [NR] (imputed)	N
940	chr22	46627779	46627780	rs1042311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	22q13.31		rs1042311-T	NR	1E-9		0.0991	[0.067-0.131] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
940	chr22	46627779	46627780	rs1042311	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	22q13.31		rs1042311-?	NR	6E-15		0.0964374	[0.072-0.121] unit increase	NR [9800000] (imputed)	N
940	chr22	46627779	46627780	rs1042311	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	22q13.31		rs1042311-?	NR	3E-10		0.0811034	[0.055-0.107] unit increase	NR [9800000] (imputed)	N
940	chr22	46627779	46627780	rs1042311	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q13.31	PPARA	rs1042311-C	0.993947	7E-12		0.0108685	[0.0077-0.0141] unit decrease	Affymetrix [13995440] (imputed)	N
940	chr22	46632588	46632589	rs9615264	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 20:0)	10,129 European ancestry individuals	NA	22q13.31	PPARA	rs9615264-A	NR	1E-6		4.882	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
940	chr22	46633781	46633782	rs6008259	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q13.31	NR	rs6008259-G	0.821105	2E-22		0.0338188	[0.027-0.041] unit increase	Affymetrix [16580851] (imputed)	N
940	chr22	46633781	46633782	rs6008259	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	22q13.31	NR	rs6008259-G	0.820867	5E-11		0.0208006	[0.014-0.027] unit increase	Affymetrix [16585745] (imputed)	N
940	chr22	46636975	46636976	rs41378347	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q13.31	NR	rs41378347-G	0.888495	5E-14		0.0148605	[0.011-0.019] unit increase	Affymetrix [16578495] (imputed)	N
940	chr22	46638158	46638159	rs10154348	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	22q13.31		rs10154348-A	NR	2E-13		0.0208	[0.015-0.026] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
940	chr22	46646018	46646019	rs113658408	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	22q13.31	C22orf40, CDPF1	rs113658408-?	NR	2E-10		0.0277	[0.02-0.035] unit increase	Affymetrix [5701386] (imputed)	N
940	chr22	46651622	46651623	rs41279831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.31		rs41279831-?	NR	8E-8				NR [~ 8900000] (imputed)	N
940	chr22	46656245	46656246	rs7291444	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q13.31	NR	rs7291444-T	0.851989	1E-10		0.0112217	[0.0077-0.0148] unit increase	Affymetrix [16578495] (imputed)	N
940	chr22	46656245	46656246	rs7291444	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	22q13.31	NR	rs7291444-T	0.851866	3E-19		0.0334042	[0.026-0.041] unit increase	Affymetrix [16580851] (imputed)	N
940	chr22	46656245	46656246	rs7291444	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	22q13.31	NR	rs7291444-T	0.851563	1E-9		0.0208464	[0.014-0.028] unit increase	Affymetrix [16585745] (imputed)	N
941	chr22	46693059	46693060	rs60032274	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q13.31	TTC38	rs60032274-T	0.03	6E-46	(X - 22162)	0.455	[0.39-0.52] unit decrease	Illumina [7750367] (imputed)	N
941	chr22	46731688	46731689	rs11090865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	22q13.31	NR	rs11090865-T	NR	2E-10		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
941	chr22	46733004	46733005	rs112941034	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TRMU	rs112941034-?	NR	4E-8	(female)	0.259051	[NR] unit increase	Affymetrix [NR] (imputed)	N
941	chr22	46760480	46760481	rs9615351	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.31		rs9615351-G	0.25	5E-50		14.87	z score increase	Affymetrix [9061022] (imputed)	N
941	chr22	46760480	46760481	rs9615351	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q13.31		rs9615351-G	0.25	8E-14		7.47	z score increase	Affymetrix [9061022] (imputed)	N
941	chr22	46760480	46760481	rs9615351	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.31		rs9615351-G	0.25	2E-14		7.68	z score increase	Affymetrix [9061022] (imputed)	N
941	chr22	46760480	46760481	rs9615351	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.31	NR	rs9615351-G	0.249	2E-12				NR [9056863] (imputed)	N
941	chr22	46760480	46760481	rs9615351	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.31	NR	rs9615351-G	0.249	1E-15				NR [9056863] (imputed)	N
941	chr22	46760480	46760481	rs9615351	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	22q13.31		rs9615351-?	NR	6E-10				NR [9705931] (imputed)	N
941	chr22	46760480	46760481	rs9615351	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	22q13.31	CELSR1	rs9615351-G	0.25	3E-8				NR [9312144] (imputed)	N
941	chr22	46770755	46770756	rs117826558	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Estradiol levels	206,927 European ancestry men	NA	22q13.31	NR	rs117826558-T	0.03397099999999997	3E-8		0.0136375	[0.0089-0.0184] unit increase	Affymetrix [16582268] (imputed)	N
941	chr22	46780784	46780785	rs148881315	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	22q13.31	NR	rs148881315-G	0.0632816	8E-6		1.1726292	[0.69-1.66] unit increase	Illumina [at least 621854] (imputed)	N
941	chr22	46792367	46792367	rs200473737	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	22q13.31	NR	rs200473737-?	NR	9E-6		0.5022	[0.29-0.71] unit increase	Illumina [at least 560000] (imputed)	N
942	chr22	46805006	46805007	rs35717986	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.31	CELSR1	rs35717986-G	0.949146	2E-9		0.0253644	[0.017-0.034] unit decrease	NR [13737936] (imputed)	N
942	chr22	46812942	46812943	rs190258023	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs190258023-?	NR	2E-6		13.99	NR unit increase	Affymetrix [at least 600000] (imputed)	N
942	chr22	46813111	46813112	rs148416395	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs148416395-?	NR	2E-6		13.99	NR unit increase	Affymetrix [at least 600000] (imputed)	N
942	chr22	46817372	46817373	rs11705266	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	22q13.31		rs11705266-?	NR	2E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
942	chr22	46818389	46818390	rs535263906	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs535263906-?	NR	4E-8	(AA)	14.6032295	[9.48-19.72] unit decrease	Affymetrix [at least 600000] (imputed)	N
942	chr22	46818389	46818390	rs535263906	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs535263906-?	NR	3E-8		14.768	NR unit increase	Affymetrix [at least 600000] (imputed)	N
942	chr22	46819004	46819005	rs150381023	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs150381023-?	NR	1E-6		14.152	NR unit increase	Affymetrix [at least 600000] (imputed)	N
942	chr22	46821308	46821309	rs5767203	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		22q13.31	CELSR1	rs5767203-T	0.732772	4E-6		0.595755	[0.35-0.84] unit increase	Illumina [640625] (imputed)	N
942	chr22	46825428	46825429	rs150109621	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.31	NR	rs150109621-?	NR	1E-6		14.152	NR unit increase	Affymetrix [at least 600000] (imputed)	N
942	chr22	46854233	46854234	rs71313049	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	HDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		22q13.31	CELSR1	rs71313049-?	NR	7E-7	(AA)	0.043	unit decrease	Affymetrix, Illumina [8129838] (imputed)	N
942	chr22	46865704	46865705	rs114959229	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	22q13.31		rs114959229-T	NR	6E-8		7.462686	NR	Affymetrix [7846216] (imputed)	N
942	chr22	46879313	46879314	rs5767218	25763902	Draaken M	2015-03-12	PLoS Genet	Genome-wide association study and meta-analysis identify ISL1 as genome-wide significant susceptibility gene for bladder exstrophy.	Classic bladder exstrophy	208 European ancestry cases, 1,703 European ancestry controls	NA	22q13.31	NR	rs5767218-C	0.367	3E-6		1.71	[1.37-2.14]	Illumina [7261187] (imputed)	N
942	chr22	46910629	46910630	rs2337055	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	22q13.31	CELSR1	rs2337055-G	0.64	9E-6		1.35		Illumina [8974355] (imputed)	N
943	chr22	46944941	46944942	rs9616042	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	22q13.31	NR	rs9616042-T	NR	6E-6		1.739	[1.37-2.21]	Illumina [13976150] (imputed)	N
943	chr22	46949148	46949149	rs9626886	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.31	NR	rs9626886-?	NR	7E-38				Affymetrix [NR]	N
943	chr22	46982292	46982293	rs9616064	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	22q13.31	CELSR1, GRAMD4	rs9616064-C	0.69	9E-6	(women)	0.104	[0.059-0.149] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
944	chr22	47095234	47095235	rs13057352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs13057352-?	NR	1E-9				NR [~ 8900000] (imputed)	N
944	chr22	47159256	47159257	rs809035	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Unilateral cleft lip	184 Asian ancestry cases, 151 European ancestry cases, 167 Hispanic cases, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	22q13.31	NR	rs809035-?	NR	2E-6		1.64	[1.51-1.79]	Illumina [539000] (imputed)	N
944	chr22	47168580	47168581	rs6008973	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	22q13.31	NR	rs6008973-?	NR	6E-8			[NR]	Illumina [5779266] (imputed)	N
945	chr22	47196523	47196524	rs2542028	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	22q13.31	TBC1D22A	rs2542028-A	0.268	3E-12		6.974821	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
945	chr22	47198054	47198055	rs710122	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q13.31		rs710122-G	0.25	1E-13		7.42	z score increase	Affymetrix [9061022] (imputed)	N
945	chr22	47198054	47198055	rs710122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	22q13.31		rs710122-?	NR	2E-8				NR [~ 8900000] (imputed)	N
945	chr22	47198054	47198055	rs710122	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	22q13.31	NR	rs710122-G	0.26	1E-9		0.012	[0.0081-0.0159] unit increase	Affymetrix [2446094] (imputed)	N
945	chr22	47198054	47198055	rs710122	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	22q13.31	NR	rs710122-G	0.26	5E-8				Affymetrix [2446094] (imputed)	N
945	chr22	47199147	47199148	rs710119	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.31	NR	rs710119-A	0.2757	2E-14				NR [9056863] (imputed)	N
945	chr22	47200353	47200354	rs4823878	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	22q13.31	NR	rs4823878-T	0.298	2E-11	(Postcentral)	0.004191961	[0.003-0.0054] unit increase	Affymetrix, Illumina [NR]	N
945	chr22	47201689	47201690	rs801656	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.31		rs801656-A	0.26	6E-16		8.09	z score increase	Affymetrix [9061022] (imputed)	N
945	chr22	47201689	47201690	rs801656	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.31	NR	rs801656-A	0.2767	3E-8				NR [9056863] (imputed)	N
945	chr22	47214748	47214749	rs8141715	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	22q13.31	NA	rs8141715-T	0.7545	1E-11		0.0136	[0.0097-0.0175] unit decrease	NR [~ 27400000] (imputed)	N
945	chr22	47217676	47217677	rs4823881	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	22q13.31	NR	rs4823881-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
946	chr22	47319207	47319208	rs130985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid t-tau:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	22q13.31	Intergenic	rs130985-?		1E-6		0.1080829	[NR] unit decrease	Illumina [575353]	N
946	chr22	47319207	47319208	rs130985	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cerebrospinal fluid p-Tau181p:AB1-42 ratio	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	22q13.31	Intergenic	rs130985-?		4E-7		0.01209867	[NR] unit decrease	Illumina [575353]	N
946	chr22	47388321	47388322	rs136139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.31		rs136139-?	NR	5E-8				NR [~ 8900000] (imputed)	N
947	chr22	47471193	47471194	rs143858123	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	22q13.31	NR	rs143858123-T	NR	8E-6		0.3453	[0.19-0.5] SD units decrease	NR [10700000] (imputed)	N
947	chr22	47506159	47506160	rs13057743	31092817	Lees JA	2019-05-15	Nat Commun	Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.	Pneumococcal meningitis	732 European and unknown ancestry cases, 4,836 European and unknown ancestry controls	NA	22q13.31	TBC1D22A	rs13057743-?	NR	6E-7		1.3513513	NR	Illumina [6800000] (imputed)	N
947	chr22	47520808	47520809	rs735252	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	22q13.31	NR	rs735252-T		5E-6		0.1816	[0.1-0.26] unit decrease	Illumina [12764477] (imputed)	N
947	chr22	47532395	47532396	rs5766691	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.31	TBC1D22A	rs5766691-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
947	chr22	47572321	47572322	rs62225284	28472463	Mullin BH	2017-05-04	Hum Mol Genet	Genome-wide association study meta-analysis for quantitative ultrasound parameters of bone identifies five novel loci for broadband ultrasound attenuation.	Bone ultrasound measurement (broadband ultrasound attenuation)	1,268 whole genome sequenced European ancestry women, 8,880 European ancestry women, 6,479 European ancestry men	NA	22q13.31	TBC1D22A	rs62225284-C	0.23	2E-7	(male)	0.11	[0.071-0.149] unit decrease	Illumina [11973598] (imputed)	N
948	chr22	47673947	47673948	rs4269021	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	22q13.31	NR	rs4269021-G	NR	4E-6		0.235	[0.14-0.33] SD units increase	NR [10700000] (imputed)	N
948	chr22	47686102	47686103	rs9626711	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair greying	6,357 Latin American individuals	NA	22q13.31	LOC101927722, TBC1D22A	rs9626711-?	NR	5E-6				Illumina [9143600] (imputed)	N
949	chr22	47804242	47804243	rs6008192	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	22q13.31	NR	rs6008192-T	0.01	5E-7		2.99	unit decrease	Illumina [8591557] (imputed)	N
949	chr22	47837512	47837513	rs2027855	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	22q13.31	NR	rs2027855-C	NR	5E-6		0.0736	[0.042-0.105] SD units decrease	NR [10700000] (imputed)	N
950	chr22	47852480	47852481	rs4823645	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 23)	2,187 European ancestry individuals	NA	22q13.31	NR	rs4823645-T	0.04817	2E-6		0.336	[0.2-0.47] unit decrease	Illumina [10677593] (imputed)	N
950	chr22	47909709	47909710	rs16996942	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	22q13.31	NR	rs16996942-?	NR	1E-8		9266.157	NR unit decrease	Illumina [2379855]	N
951	chr22	48012110	48012111	rs76989557	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	22q13.31		rs76989557-G	NR	1E-6	(GLM)	9.38	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
951	chr22	48021664	48021665	rs6008312	28577822	Deters KD	2017-05-31	Brain Lang	Genome-wide association study of language performance in Alzheimer's disease.	Language performance in older adults (adjusted for episodic memory)	310 European ancestry Alzheimer's disease individuals, 511 European ancestry individuals with late mild cognitive impairment, 280 European ancestry individuals with early mild cognitive impairment, 94 European ancestry individuals with significant memory concern, 365 European ancestry individuals with normal cognition	NA	22q13.31	LINC00898	rs6008312-?	NR	3E-6		0.241	[0.14-0.34] unit decrease	Illumina [5574300] (imputed)	N
951	chr22	48082685	48082686	rs6007718	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.31	NR	rs6007718-C	0.01394	4E-9	(ACO1)	0.8362	NR unit increase	Illumina [1671387] (imputed)	N
952	chr22	48112044	48112045	rs147466853	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	22q13.31		rs147466853-C	NR	2E-6	(GLM)	3.7236	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
952	chr22	48158985	48158986	rs5767976	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.31	RP11-191L9.4	rs5767976-?	NR	8E-10		0.0125027755	[0.0085-0.0165] unit decrease	NR [7306098]	N
952	chr22	48160885	48160886	rs151233144	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	22q13.31		rs151233144-C	NR	5E-6	(GLM)	9.3214	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
952	chr22	48182990	48182991	rs9626773	30108155	Hebbar P	2018-08-14	J Lipid Res	Genome-wide association study identifies novel recessive genetic variants for high TGs in an Arab population.	Triglyceride levels	1,353 Kuwaiti ancestry individuals	1,176 Kuwaiti ancestry individuals	22q13.31	RP11-191L9.4, CERK	rs9626773-A	NR	7E-15		7.776	z-score increase	Illumina [632375]	N
952	chr22	48184881	48184882	rs9615637	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsessive compulsive disorder severity	376 Spanish ancestry individuals	NA	22q13.31	LOC284930	rs9615637-?	NR	2E-6		2.343338	NR unit decrease	Illumina [338357]	N
952	chr22	48188252	48188253	rs5767992	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.31	RP11-191L9.1	rs5767992-A	0.067	8E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
952	chr22	48190726	48190727	rs720441	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	22q13.31		rs720441-C	NR	3E-6		1.6		Illumina [7574753] (imputed)	N
952	chr22	48214607	48214608	rs6008408	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Cephalic index	4,419 European ancestry individuals	NA	22q13.31	NR	rs6008408-T	0.4194	4E-6		0.4477	[0.21-0.68] unit decrease	Illumina [at least 567677] (imputed)	N
953	chr22	48240860	48240861	rs28714227	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		22q13.31	NR	rs28714227-T	NR	2E-6		0.587953	[0.35-0.83] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
953	chr22	48246922	48246923	rs12167548	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	22q13.31	NR	rs12167548-A	0.01	2E-6		1.9	[1.63-2.17]	Illumina [8468885] (imputed)	N
953	chr22	48284513	48284514	rs9627183	18821564	Mick E	2008-09-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of response to methylphenidate in 187 children with attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	105 European ancestry cases, 34 Hispanic cases, 26 African American cases, 22 cases	NA	22q13.31	intergenic	rs9627183-C	0.03	3E-6				Affymetrix [319722]	N
953	chr22	48308757	48308758	rs764286641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	22q13.31	CTA-280A3.2	rs764286641-T	0.9982	5E-6		1.3551	[0.77-1.94] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
953	chr22	48308757	48308758	rs764286641	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	22q13.31	CTA-280A3.2	rs764286641-T	0.9982	3E-6		1.38	[0.8-1.96] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
953	chr22	48356862	48356863	rs5768213	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	22q13.31	CTA-280A3.2	rs5768213-T	0.4832	8E-6		0.0363	[0.02-0.052] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
954	chr22	48386669	48386670	rs9615723	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q13.31	FAM19A5	rs9615723-C	0.440516	4E-8		0.00771492	[0.005-0.0105] unit increase	Affymetrix [12370749]	N
954	chr22	48386669	48386670	rs9615723	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.31		rs9615723-?	NR	3E-9				NR [~ 8900000] (imputed)	N
954	chr22	48453590	48453591	rs117294	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (fairness)	9,617 European ancestry individuals	NA	22q13.31	intergenic	rs117294-C	NR	7E-6		0.11	[0.061-0.159] unit increase	Illumina [628922]	N
954	chr22	48456686	48456687	rs191207256	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	22q13.31	NR	rs191207256-?	NR	8E-6		2.2609	[0.9-3.62] unit increase	Illumina [at least 560000] (imputed)	N
954	chr22	48479165	48479166	rs9615754	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	22q13.31	LOC100289420, FAM19A5	rs9615754-?	NR	4E-6		1.724138	[NR]	Illumina [up to 547389]	N
954	chr22	48479165	48479166	rs9615754	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	22q13.31	LOC100289420, FAM19A5	rs9615754-?	0.85	4E-6	(Turkish)	1.923077	[1.45-2.56]	Illumina [up to 547389]	N
954	chr22	48494652	48494653	rs150927461	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	22q13.31	Intergenic	rs150927461-T	NR	4E-7	(between families)	5.08	unit increase	Affymetrix [up to 15107142] (imputed)	N
955	chr22	48622650	48622651	rs1883133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.32	Intergenic	rs1883133-T	0.697	1E-8	(MTAG)	0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
955	chr22	48622650	48622651	rs1883133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	22q13.32	Intergenic	rs1883133-C	0.303	5E-8		0.0135	[0.0086-0.0184] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
956	chr22	48630183	48630184	rs13054085	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.32	intergenic	rs13054085-A	0.236	2E-6	(Hcy )	0.03	[NR] umol/L increase	Illumina [899892]	N
956	chr22	48633628	48633629	rs133549	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.32	TBC1D22A	rs133549-?	NR	4E-6	(CE 18:0)	0.19866498	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
956	chr22	48634468	48634469	rs9615838	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 2, vertical position of orbits relative to midface)	2,187 European ancestry individuals	NA	22q13.32	NR	rs9615838-T	0.03187	5E-6		0.3856	[0.22-0.55] unit increase	Illumina [10677593] (imputed)	N
956	chr22	48651996	48651997	rs1004689	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	22q13.32	intergenic	rs1004689-G	0.467	2E-6	(IGF2-DMR)			Illumina [515966]	N
956	chr22	48722382	48722383	rs133658	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	22q13.32	NR	rs133658-T	0.137	6E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
956	chr22	48727258	48727259	rs133666	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis in sarcoidosis	260 African American cases, 513 African American controls	NA	22q13.32	intergenic	rs133666-G	NR	1E-6		1.9	[1.47-2.45]	Illumina [13976150] (imputed)	N
956	chr22	48727258	48727259	rs133666	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	22q13.32	intergenic	rs133666-G	NR	3E-8		1.787	[1.45-2.20]	Illumina [13976150] (imputed)	N
956	chr22	48741797	48741798	rs4407	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	22q13.32	intergenic	rs4407-?	NR	3E-6	(European, Endometroid subtype)			Illumina [873935]	N
956	chr22	48741797	48741798	rs4407	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	22q13.32	intergenic	rs4407-?	NR	2E-6	(Endometroid subtype)			Illumina [873935]	N
956	chr22	48749662	48749663	rs5767109	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.32	NR	rs5767109-?	NR	9E-11				Affymetrix [NR]	N
957	chr22	48759227	48759228	rs9941963	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.32	NR	rs9941963-?	NR	1E-8				Affymetrix [NR]	N
957	chr22	48766823	48766824	rs4823758	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	22q13.32	NR	rs4823758-?	NR	3E-6				Affymetrix [NR]	N
957	chr22	48819676	48819677	rs5768604	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.32	NR	rs5768604-?		1E-6				Illumina [4322238] (imputed)	N
957	chr22	48869265	48869266	rs5768651	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x calcium channel blockers interaction in hypertension	10,511 European ancestry individuals	NA	22q13.32		rs5768651-T	0.272	9E-7				Affymetrix, Illumina [6400000] (imputed)	N
957	chr22	48871018	48871019	rs713763	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.32	NR	rs713763-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
957	chr22	48871018	48871019	rs713763	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.32		rs713763-?	NR	3E-11				NR [~ 8900000] (imputed)	N
957	chr22	48871018	48871019	rs713763	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	22q13.32	NA	rs713763-A	0.4168	4E-12		0.0136	[0.0097-0.0175] unit increase	NR [~ 27400000] (imputed)	N
957	chr22	48874411	48874412	rs10854853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	22q13.32		rs10854853-T	0.46	9E-10				NR [NR] (imputed)	N
957	chr22	48874411	48874412	rs10854853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	22q13.32		rs10854853-T	0.46	2E-7		0.011	mmol/L decrease	NR [NR] (imputed)	N
957	chr22	48874411	48874412	rs10854853	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	22q13.32		rs10854853-T	0.46	2E-12		0.01	% increase	NR [NR] (imputed)	N
957	chr22	48875138	48875139	rs60767289	29678681	Matana A	2018-04-18	Genomics	Genome-wide meta-analysis identifies novel gender specific loci associated with thyroid antibodies level in Croatians.	Plasma anti-thyroglobulin levels	1,596 Croatian ancestry women, 1,033 Croatian ancestry men	NA	22q13.32	FAM19A5	rs60767289-G	NR	2E-6	(women)	0.201	[0.12-0.29] unit decrease	Illumina [5527232] (imputed)	N
957	chr22	48875698	48875699	rs9615905	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	22q13.32	FAM19A5	rs9615905-C	0.54	1E-8		0.028	unit decrease	NR [2324712] (imputed)	N
957	chr22	48881561	48881562	rs1894544	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	22q13.32	FAM19A5	rs1894544-G	0.545377	5E-9		0.0112374	[0.0075-0.015] unit increase	Affymetrix [NR] (imputed)	N
957	chr22	48885051	48885052	rs7284558	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.32	Intergenic	rs7284558-T	0.6681	4E-9	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
957	chr22	48885788	48885789	rs6008732	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x calcium channel blockers interaction in hypertension	10,511 European ancestry individuals	NA	22q13.32		rs6008732-T	0.215	9E-7				Affymetrix, Illumina [6400000] (imputed)	N
957	chr22	48888254	48888255	rs1034435	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		22q13.32	FAM19A5	rs1034435-A	0.659	3E-6	(liability model)	0.07	[0.031-0.109] unit decrease	NR [19725427] (imputed)	N
958	chr22	48909467	48909468	rs5767180	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	22q13.32	NR	rs5767180-A	0.01009	6E-7		0.7425	[0.45-1.03] unit increase	Illumina [10677593] (imputed)	N
958	chr22	48912282	48912283	rs133501	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.32	BRD1	rs133501-?	NR	4E-6	(CE 18:0)	0.22161108	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr22	48923458	48923459	rs80088139	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	22q13.32	NR	rs80088139-?	NR	5E-6				NR [up to 8466825] (imputed)	N
958	chr22	48929568	48929569	rs5768709	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	22q13.32	FAM19A5	rs5768709-G	0.23	1E-10		1.25	[1.17-1.34]	Affymetrix [666141]	N
958	chr22	49005908	49005909	rs79147928	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	22q13.32	FAM19A5	rs79147928-G	0.86	8E-7		1.5384616	[1.3-1.82]	Affymetrix, Illumina [up to 7729175] (imputed)	N
959	chr22	49150215	49150216	rs117023465	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	22q13.32		rs117023465-G	0.668	1E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
960	chr22	49175008	49175009	rs131025	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (parent-of-origin effect)	169 European ancestry trios, 5 European ancestry father-child pairs, 19 European ancestry mother-child pairs, 8 European ancestry affected child	NA	22q13.32	LOC105369162, MIR4535	rs131025-?	NR	8E-6				Illumina [NR]	N
960	chr22	49217097	49217098	rs75814742	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	22q13.32	MIR4535, LINC01310	rs75814742-C	0.132136	6E-6		0.552782	[0.31-0.79] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
961	chr22	49290549	49290550	rs28533249	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to quetiapine in schizophrenia	386 Han Chinese ancestry cases	NA	22q13.32	LINC01310	rs28533249-G	NR	4E-6		8.8627	[5.16-12.56] unit decrease	Illumina [6097251] (imputed)	N
961	chr22	49292666	49292667	rs149925895	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	22q13.32	NR	rs149925895-?	NR	9E-6				Illumina [NR] (imputed)	N
961	chr22	49318525	49318526	rs7290192	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	22q13.32	LOC100128946	rs7290192-A	0.93	7E-6		1.754386		Affymetrix [at least 730985] (imputed)	N
961	chr22	49327442	49327443	rs2318405	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Response to placebo treatment in childhood asthma (FVC change)	250 European ancestry children	NA	22q13.32	ENSG00000205632	rs2318405-G	0.47	9E-6		4.34	NR unit decrease	Illumina [NR] (imputed)	N
961	chr22	49340057	49340058	rs371842668	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.32	NR	rs371842668-G	0.01394	3E-11	(BPHL)	0.1401	NR unit decrease	Illumina [1671387] (imputed)	N
961	chr22	49356562	49356563	rs113959751	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	22q13.32	NR	rs113959751-T	0.0462	9E-6		0.03262522	[0.018-0.047] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
961	chr22	49358320	49358321	rs11705249	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	22q13.32		rs11705249-T	NR	6E-7		1.5183		Illumina [up to 7574753] (imputed)	N
961	chr22	49365857	49365858	rs116707406	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	22q13.32	LINC01310	rs116707406-A	0.0037	6E-6		0.5391	[0.31-0.77] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
961	chr22	49408734	49408735	rs5769796	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	22q13.32		rs5769796-A	0.27	1E-12		7.11	z score increase	Affymetrix [9061022] (imputed)	N
961	chr22	49408734	49408735	rs5769796	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	22q13.32	NR	rs5769796-A	0.2325	2E-13				NR [9056863] (imputed)	N
962	chr22	49481928	49481929	rs7364276	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	22q13.32	LINC01310	rs7364276-T	0.788	9E-6		1.23	[1.13-1.35]	Affymetrix, Illumina [12148595] (imputed)	N
963	chr22	49554355	49554356	rs6009185	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	22q13.33	NR	rs6009185-?	NR	5E-6		2.668	NR unit increase	Affymetrix [at least 600000] (imputed)	N
963	chr22	49570586	49570587	rs6009527	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-3 polyunsaturated fatty acid levels (alphalinolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	22q13.33	NR	rs6009527-T	0.3565863	8E-6		0.0834	[0.047-0.12] unit decrease	Illumina [up to 1980188] (imputed)	N
963	chr22	49574990	49574991	rs4621267	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	1,940 Japanese ancestry cases, 7,408 Japanese ancestry controls	4,071 Japanese ancestry cases, 54,470 Japanese ancestry controls	22q13.33	RPL35P8	rs4621267-T	NR	7E-6		1.092	[1.051-1.134]	Illumina [6627481] (imputed)	N
963	chr22	49663039	49663040	rs2858654	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine without aura	27 Taiwanese ancestry cases, 142 Taiwanese ancestry controls	NA	22q13.33	intergenic	rs2858654-T	0.02465	8E-9		11.31	NR	Affymetrix [710525]	N
964	chr22	49677463	49677464	rs62220604	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	22q13.33	NR	rs62220604-A	0.282536	2E-9		0.00836975	[0.0056-0.0112] unit increase	Affymetrix [16578495] (imputed)	N
964	chr22	49677645	49677646	rs6009583	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	22q13.33	NR	rs6009583-T	0.267089	3E-16		0.018393	[0.014-0.023] unit increase	Affymetrix [16583148] (imputed)	N
964	chr22	49677645	49677646	rs6009583	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	22q13.33	C22orf34	rs6009583-C	0.74	5E-8		0.03	[0.018-0.042] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
964	chr22	49678712	49678713	rs11703376	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	22q13.33	NR	rs11703376-T	0.26977300000000004	3E-23		0.0342623	[0.028-0.041] unit increase	Affymetrix [16577313] (imputed)	N
964	chr22	49678712	49678713	rs11703376	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	22q13.33	NR	rs11703376-T	0.26966199999999996	6E-32		0.0396526	[0.033-0.046] unit increase	Affymetrix [16577424] (imputed)	N
964	chr22	49678712	49678713	rs11703376	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	22q13.33	FAM19A5, C22orf34	rs11703376-?	NR	4E-9		0.028	[0.038-0.019] unit decrease	Illumina [12039492]	N
964	chr22	49680428	49680429	rs9616551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	22q13.33		rs9616551-?	NR	7E-10				NR [~ 8900000] (imputed)	N
964	chr22	49687485	49687486	rs111476843	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (decremental area under the curve for 0-120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	22q13.33	NR	rs111476843-A	0.0589	5E-6		0.3958	[0.23-0.57] unit decrease	Illumina [NR] (imputed)	N
964	chr22	49696008	49696009	rs7289034	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	22q13.33	intergenic	rs7289034-C	NR	8E-6		0.14410233	[0.074-0.214] unit increase	Illumina [> 6200000] (imputed)	N
964	chr22	49750405	49750406	rs17000827	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	22q13.33		rs17000827-?	NR	4E-6		0.322	[-2.60036-3.24436] unit increase	Affymetrix [6423076] (imputed)	N
964	chr22	49775972	49775973	rs13058191	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	22q13.33	NR	rs13058191-?	NR	4E-6		0.1545	[0.089-0.22] unit increase	Illumina [~ 7800000] (imputed)	N
964	chr22	49801422	49801423	rs9627723	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	22q13.33	NR	rs9627723-C	0.3654	4E-6		45.0	[26-64] unit increase	NR [9714326] (imputed)	N
965	chr22	49812501	49812502	rs17000918	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	22q13.33	FLJ44385	rs17000918-A		4E-9	(AA)			Illumina [NR]	N
965	chr22	49842288	49842289	rs9627735	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	22q13.33	NR	rs9627735-T	0.203	6E-6		0.152	[0.085-0.219] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
965	chr22	49843328	49843329	rs9616637	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		C22orf34	rs9616637-A	0.06	2E-7		0.19	[0.11-0.27] unit decrease	Illumina [3700000] (imputed)	N
966	chr22	49942308	49942309	rs763123	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		C22orf34	rs763123-?	NR	3E-11	(female)	0.643417	[NR] unit increase	Affymetrix [NR] (imputed)	N
966	chr22	50006077	50006078	rs763127	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.33	NR	rs763127-T	0.62113	2E-21		0.018506	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
966	chr22	50008968	50008969	rs135871	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	22q13.33	NR	rs135871-A		8E-6		1.757	[NR]	NR [NR]	N
966	chr22	50010072	50010073	rs1018812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs1018812-T	0.572737	2E-20				Affymetrix, Illumina [23467995] (imputed)	N
966	chr22	50010890	50010891	rs9616327	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.33	C22orf34	rs9616327-G	0.37392	2E-16		0.018790353	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
966	chr22	50013401	50013402	rs5769707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	22q13.33		rs5769707-T	NR	8E-15		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
966	chr22	50013401	50013402	rs5769707	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	22q13.33	C22orf34	rs5769707-T	0.6151	3E-10		0.02297405	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
966	chr22	50013401	50013402	rs5769707	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	22q13.33	C22orf34	rs5769707-T	0.6151	7E-11		0.02392192	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
966	chr22	50047677	50047678	rs9616332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.33		rs9616332-?	NR	4E-8				NR [~ 8900000] (imputed)	N
966	chr22	50063613	50063614	rs4536758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q13.33		rs4536758-C	0.636927	6E-15		0.018104978	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
966	chr22	50067993	50067994	rs1807675	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q13.33	NR	rs1807675-T	0.362062	7E-10		0.0124787	[0.0085-0.0165] unit decrease	Affymetrix [15000001]	N
967	chr22	50081517	50081518	rs17001251	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.33	NR	rs17001251-C	0.01742	2E-8	(MYO1B)	0.116	NR unit increase	Illumina [1671387] (imputed)	N
967	chr22	50086372	50086373	rs6009824	21273288	Del Greco M F	2011-01-27	Hum Mol Genet	Genome-wide association analysis and fine mapping of NT-proBNP level provide novel insight into the role of the MTHFR-CLCN6-NPPA-NPPB gene cluster.	Natriuretic peptide levels	1,325 European ancestry individuals	1,746 European ancestry individuals	22q13.33	BRD1	rs6009824-A	0.15	7E-6		0.13	[0.071-0.189] unit decrease	Illumina [~ 2500000] (imputed)	N
967	chr22	50113184	50113185	rs12171156	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	22q13.33	ZBED4	rs12171156-?	NR	3E-6	(LPC 16:1)	0.65735626	[0.38-0.93] unit decrease	Affymetrix [at least 2500000] (imputed)	N
967	chr22	50128267	50128268	rs4824093	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	22q13.33	C22orf34	rs4824093-?		8E-6				Illumina [859311]	N
967	chr22	50164437	50164438	rs61333294	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.33		rs61333294-A	0.06	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
967	chr22	50164437	50164438	rs61333294	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.33	NR	rs61333294-A	0.0595	1E-10				NR [9056863] (imputed)	N
967	chr22	50167651	50167652	rs4468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	22q13.33		rs4468-C	NR	1E-12		0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
967	chr22	50167651	50167652	rs4468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	22q13.33		rs4468-?	NR	2E-16				NR [~ 8900000] (imputed)	N
967	chr22	50170673	50170674	rs148324843	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		BRD1	rs148324843-?	NR	7E-9	(female)	0.71213	[NR] unit increase	Affymetrix [NR] (imputed)	N
967	chr22	50179639	50179640	rs763236	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	22q13.33	NR	rs763236-?	NR	3E-8				Illumina [7760689] (imputed)	N
967	chr22	50180496	50180497	rs138834	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	22q13.33		rs138834-?	NR	1E-8				NR [~ 8900000] (imputed)	N
967	chr22	50199588	50199589	rs138857	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q13.33	BRD1	rs138857-T	0.1963	4E-10		0.02849005	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
968	chr22	50218610	50218611	rs138880	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	22q13.33	BRD1	rs138880-A	0.80349	4E-13		1.0405899	NR	Affymetrix [~ 9600000] (imputed)	N
968	chr22	50218610	50218611	rs138880	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	22q13.33	BRD1	rs138880-C	0.78	2E-7		1.1	[NR]	NR [1085772] (imputed)	N
968	chr22	50219951	50219952	rs77692990	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	22q13.33	BRD1	rs77692990-T	0.0806	4E-10		0.2014	[0.14-0.26] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
968	chr22	50235191	50235192	rs145069606	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.33		rs145069606-?	NR	4E-16		0.0255872	[0.019-0.032] unit increase	Affymetrix [20259828] (imputed)	N
968	chr22	50243326	50243327	rs10706646	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.33	ZBED4	rs10706646-T	0.803921	9E-25		0.029358527	[0.024-0.035] unit increase	Affymetrix [93095623] (imputed)	N
968	chr22	50260471	50260472	rs932536	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.33	ZBED4	rs932536-A	0.111518	8E-15		0.022861	[0.017-0.029] unit decrease	NR [13737936] (imputed)	N
968	chr22	50271175	50271176	rs5769765	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	22q13.33	NR	rs5769765-G	NR	2E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
968	chr22	50290440	50290441	rs9616772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.33		rs9616772-?	NR	8E-16				NR [~ 8900000] (imputed)	N
968	chr22	50306337	50306338	rs9616371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	22q13.33		rs9616371-A	NR	2E-11		0.0231	[0.016-0.03] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
968	chr22	50309234	50309235	rs3883952	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.33	ALG12	rs3883952-A	0.202364	1E-18		0.024752617	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
968	chr22	50309914	50309915	rs9616205	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.33	ALG12	rs9616205-T	0.188044	1E-9		0.017622046	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr22	50310828	50310829	rs9616376	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.33		rs9616376-A	0.812	5E-10				Affymetrix [10369434] (imputed)	N
968	chr22	50318513	50318514	rs112352679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	22q13.33	NR	rs112352679-T	0.810058	2E-11		0.00937484	[0.0065-0.0123] unit increase	Affymetrix [16582621] (imputed)	N
968	chr22	50318513	50318514	rs112352679	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	22q13.33	NR	rs112352679-T	0.810058	3E-10		0.00954117	[0.0064-0.0126] unit increase	Affymetrix [16582614] (imputed)	N
969	chr22	50335838	50335839	rs28470568	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	22q13.33	NR	rs28470568-T	0.1448	1E-9		1.11	[1.08-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
969	chr22	50343918	50343919	rs111700120	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.33	NR	rs111700120-C	0.847027	1E-10		0.0070734	[0.0048-0.0094] unit increase	Affymetrix [16582909] (imputed)	N
969	chr22	50343918	50343919	rs111700120	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.33	NR	rs111700120-C	0.847027	4E-12		0.00838941	[0.0058-0.0109] unit increase	Affymetrix [16582965] (imputed)	N
969	chr22	50346041	50346042	rs56091001	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	22q13.33	IL17REL, LOC90834, MAPK11, MAPK12, MLC1, PANX2, PIM3, PLXNB2, PPP6R2, SELO, TRABD, TUBGCP6, ZBED4, ALG12, BRD1, C22orf34, MOV10L1, CRELD2, DENND6B, HDAC10	rs56091001-T	0.1388	4E-6		1.28	[1.16-1.42]	Illumina [7300000] (imputed)	N
969	chr22	50348969	50348970	rs28567061	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	22q13.33	PIM3	rs28567061-A	0.776874	8E-11		0.0156946	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
969	chr22	50350970	50350971	rs28372448	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	22q13.33	PIM3	rs28372448-?	NR	8E-6		1.68	[1.34-2.11]	Illumina [948142]	N
969	chr22	50351976	50351977	rs28681372	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	22q13.33	PIM3	rs28681372-A	0.597892	1E-8		0.015775	[0.01-0.021] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
969	chr22	50354254	50354255	rs28375915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	22q13.33		rs28375915-A	NR	1E-10		0.0498	[0.035-0.065] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
969	chr22	50356301	50356302	rs28691713	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	22q13.33	PIM3	rs28691713-C	0.555	2E-17		1.07	[1.05-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
969	chr22	50356692	50356693	rs4077129	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q13.33	PIM3	rs4077129-T	0.276	4E-8		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
969	chr22	50356692	50356693	rs4077129	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	22q13.33	PIM3	rs4077129-T	0.259	7E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [247470]	N
969	chr22	50356692	50356693	rs4077129	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	22q13.33	PIM3	rs4077129-T	0.276	2E-7		1.04	[1.02-1.05]	Affymetrix, Illumina [247470]	N
969	chr22	50356849	50356850	rs1801645	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	22q13.33		rs1801645-T	NR	5E-11		0.0553	[0.039-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
969	chr22	50356849	50356850	rs1801645	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	22q13.33	NR	rs1801645-C	0.2778	4E-17		0.0374	[0.029-0.046] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
969	chr22	50356849	50356850	rs1801645	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q13.33	PIM3	rs1801645-C	0.275	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
969	chr22	50357624	50357625	rs117325373	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	22q13.33		rs117325373-G	NR	2E-6	(GLM)	6.3469	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
969	chr22	50422384	50422385	rs36171610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	22q13.33	NR	rs36171610-G	0.509406	2E-11		0.00574101	[0.0041-0.0074] unit increase	Affymetrix [16582909] (imputed)	N
969	chr22	50422384	50422385	rs36171610	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	22q13.33	NR	rs36171610-G	0.509406	4E-8		0.00531844	[0.0035-0.0072] unit increase	Affymetrix [16582965] (imputed)	N
969	chr22	50435479	50435480	rs5771069	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	22q13.33	NR	rs5771069-G	0.505	2E-12		0.0325	[0.023-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
969	chr22	50435479	50435480	rs5771069	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	22q13.33	PIM3, IL17REL, TTLL8	rs5771069-?		2E-10				Illumina [9578670] (imputed)	N
969	chr22	50435479	50435480	rs5771069	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	22q13.33	IL17REL, PIM3	rs5771069-G	0.51	2E-7		1.11	[1.07-1.16]	Affymetrix, Illumina [~ 1100000] (imputed)	N
969	chr22	50435479	50435480	rs5771069	20228798	Franke A	2010-03-14	Nat Genet	Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL).	Ulcerative colitis	1,043 European ancestry cases, 1,703 European ancestry controls	2,539 European ancestry cases, 5,428 European ancestry controls	22q13.33	IL17REL	rs5771069-G	0.49	4E-8		1.17	[1.11-1.25]	Affymetrix [1897764] (imputed)	N
969	chr22	50440295	50440296	rs137848	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	22q13.33	NR	rs137848-C	0.5163	6E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
969	chr22	50445703	50445704	rs5771222	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	22q13.33	IL17REL	rs5771222-T	0.504694	1E-10		0.0013949	[0.00094-0.00185] unit increase	Affymetrix [13995440] (imputed)	N
969	chr22	50446987	50446988	rs137864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q13.33	NR	rs137864-?	NR	2E-7		0.0426	[0.027-0.059] unit decrease	Illumina [at least 560000] (imputed)	N
970	chr22	50464438	50464439	rs137887	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child cases	NA	22q13.33	TTLL8	rs137887-G	NR	7E-6	(Defiant/Vindictive dimension)	0.9683	[0.55-1.39] unit increase	Illumina [1871025] (imputed)	N
970	chr22	50471219	50471220	rs115025532	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		22q13.33	TTLL8	rs115025532-?	NR	8E-7	(AA)	0.103	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
970	chr22	50493426	50493427	rs56330886	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	22q13.33	MLC1	rs56330886-G	0.189	3E-9	(AA, Men)	0.093	[0.062-0.124] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
970	chr22	50501684	50501685	rs137921	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	22q13.33	NR	rs137921-C		8E-6		0.1447	[0.081-0.208] SD units increase	NR [10700000] (imputed)	N
970	chr22	50503062	50503063	rs181700711	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	22q13.33		rs181700711-?	NR	5E-6		0.805259	[0.71-0.9]	NR [688737]	N
970	chr22	50505583	50505584	rs5771348	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals, 6,149 African American individuals	NA	22q13.33	NR	rs5771348-?	NR	2E-17				Affymetrix, Illumina [6211016] (imputed)	N
970	chr22	50511433	50511433	rs530062647	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MLC1	rs530062647-?	NR	7E-11		0.954964	[NR] unit decrease	Affymetrix [NR] (imputed)	N
970	chr22	50522074	50522075	rs13054047	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MLC1	rs13054047-?	NR	6E-9	(male)	1.54532	[NR] unit decrease	Affymetrix [NR] (imputed)	N
970	chr22	50555824	50555825	rs4838804	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Amygdala volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	22q13.33	MOV10L1	rs4838804-?		5E-6				Illumina [4322238] (imputed)	N
970	chr22	50557406	50557407	rs138229	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	22q13.33	NR	rs138229-G	0.467	9E-6	(Illicit drug use)			Illumina [527829]	N
970	chr22	50558945	50558946	rs71316583	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MOV10L1	rs71316583-?	NR	1E-8	(male)	1.50441	[NR] unit decrease	Affymetrix [NR] (imputed)	N
970	chr22	50569789	50569790	rs138249	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	22q13.33	NR	rs138249-G		7E-6				NR [525577]	N
970	chr22	50570754	50570755	rs75570992	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	22q13.33	TRABD, MOV10L1	rs75570992-C		8E-32	(PLT)	0.096	[0.08-0.112] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
970	chr22	50583244	50583245	rs138263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	22q13.33	MOV10L1	rs138263-T	0.388469	4E-12		0.01619618	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
970	chr22	50583244	50583245	rs138263	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	22q13.33	MOV10L1	rs138263-T	0.3879	1E-9		0.0226832	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
970	chr22	50591469	50591470	rs56173861	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation-estimated plasminogen activator inhibitor-1 levels	34,448 European ancestry individuals	NA	22q13.33	NR	rs56173861-A	0.0388	2E-14		421.813	[313.79-529.83] unit increase	Affymetrix, Illumina [7567618] (imputed)	N
971	chr22	50604695	50604696	rs112915006	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	22q13.33	PIM3	rs112915006-G	0.0512	1E-6		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
971	chr22	50616805	50616806	rs5771206	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.33	NR	rs5771206-?	NR	5E-9	(left ventral DC)			NR [9227495] (imputed)	N
971	chr22	50616805	50616806	rs5771206	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.33	NR	rs5771206-?	NR	2E-8	(left fusiform)			NR [9227495] (imputed)	N
971	chr22	50627187	50627188	rs11912419	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs11912419-C	0.845901	3E-8		0.0305425	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
971	chr22	50627252	50627253	rs1555050	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.33	NR	rs1555050-?	NR	1E-8	(left ventral DC)			NR [9227495] (imputed)	N
971	chr22	50628936	50628937	rs75107793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	22q13.33		rs75107793-A	NR	9E-128		0.1072	[0.098-0.116] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
971	chr22	50628936	50628937	rs75107793	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	22q13.33		rs75107793-G	0.927	3E-28				Affymetrix [10369434] (imputed)	N
971	chr22	50628936	50628937	rs75107793	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.33		rs75107793-G	0.927	2E-77				Affymetrix [10369434] (imputed)	N
971	chr22	50628936	50628937	rs75107793	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	22q13.33	NR	rs75107793-A	0.05865	5E-19		0.0444502	[0.035-0.054] unit increase	Affymetrix [3505788] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.33	TRABD	rs75107793-A	0.072545	1E-133		0.10856329	[0.1-0.117] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.33	TRABD	rs75107793-A	0.072532	4E-137		0.11011617	[0.1-0.12] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.33	TRABD	rs75107793-A	0.072519	6E-11		0.02877612	[0.02-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	22q13.33	TRABD	rs75107793-A	0.072369	7E-10		0.02652161	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	22q13.33	TRABD	rs75107793-A	0.07236	5E-11		0.028284816	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs75107793-A	0.0686667	3E-195				Affymetrix, Illumina [24588908] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	22q13.33	NR	rs75107793-A	0.071787	3E-199		0.113669	[0.11-0.12] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs75107793-A	0.0696626	7E-15				Affymetrix, Illumina [19872809] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	22q13.33	NR	rs75107793-A	0.072251	3E-17		0.032876	[0.025-0.04] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	22q13.33		rs75107793-?	0.07119	4E-8		0.005026	unit decrease	NR [6200000] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	22q13.33		rs75107793-?	0.07119	8E-11		0.01401	unit decrease	NR [6200000] (imputed)	N
971	chr22	50628936	50628937	rs75107793	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	22q13.33		rs75107793-?	0.07119	8E-7		0.01313	unit decrease	NR [6200000] (imputed)	N
971	chr22	50628936	50628937	rs75107793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	22q13.33		rs75107793-?	NR	1E-12				NR [~ 8900000] (imputed)	N
971	chr22	50628936	50628937	rs75107793	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q13.33	TRABD	rs75107793-A	0.0726	2E-55		0.1121087	[0.098-0.126] unit increase	Affymetrix [~ 2500000] (imputed)	N
971	chr22	50628936	50628937	rs75107793	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q13.33	TRABD	rs75107793-A	0.0725	2E-59		0.1157317	[0.1-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
971	chr22	50628995	50628996	rs56036086	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	22q13.33	TRABD	rs56036086-A	0.1382	6E-23		0.05224331	[0.042-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
971	chr22	50628995	50628996	rs56036086	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	22q13.33	TRABD	rs56036086-A	0.1383	4E-22		0.05110798	[0.041-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
971	chr22	50629871	50629872	rs73187247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	22q13.33	TRABD	rs73187247-T	0.136914	5E-29		0.03692072	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
971	chr22	50634182	50634183	rs138546553	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	22q13.33	TRABD	rs138546553-A	0.0167542449479736	9E-8	(G_Lactococcus_RNT)	0.863823	[0.55-1.18] unit increase	Illumina [7711310] (imputed)	N
971	chr22	50637921	50637922	rs6712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.33	TRABD	rs6712-C	0.133165	1E-27		0.03647269	[0.03-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
971	chr22	50638171	50638171	rs113214100	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	22q13.33	NR	rs113214100-CA	0.166	8E-9		0.0204689	[0.014-0.027] unit decrease	Affymetrix [3505788] (imputed)	N
971	chr22	50639472	50639473	rs5771225	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		22q13.33	SELO	rs5771225-T	0.217	5E-6	(liability model)	0.09	[0.051-0.129] unit increase	NR [19725427] (imputed)	N
971	chr22	50647447	50647448	rs55958053	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.33		rs55958053-T	0.859	3E-24				Affymetrix [10369434] (imputed)	N
971	chr22	50651237	50651238	rs6010205	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	22q13.33	NR	rs6010205-?	NR	3E-8	(right ventral DC)			NR [9227495] (imputed)	N
971	chr22	50655721	50655722	rs144505070	29559957	Wang W	2018-03-06	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Analyses of Serum Uric Acid in Middle and Old-Aged Chinese Twins.	Serum uric acid levels	139 Chinese ancestry dizygotic twin pairs	NA	22q13.33	SELENOO	rs144505070-?	NR	8E-7				Illumina [1365181]	N
971	chr22	50661868	50661869	rs5771242	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	22q13.33	NR	rs5771242-?		1E-6	(AA)			Illumina [up to 524000]	N
971	chr22	50672153	50672154	rs17836662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA			rs17836662-?	NR	1E-8				NR [~ 8900000] (imputed)	N
971	chr22	50676258	50676259	rs7511006	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.33	TUBGCP6, MOV10L1	rs7511006-G	0.244	1E-6	(Urinary nitrogen )	0.04	[NR] g/d increase	Illumina [899892]	N
971	chr22	50678570	50678571	rs5771109	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	22q13.33	TUBGCP6	rs5771109-T	0.599435	7E-6		0.0269	[0.015-0.039] unit decrease	Illumina [1220000] (imputed)	N
971	chr22	50679435	50679436	rs113872034	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	22q13.33	NR	rs113872034-G	NR	1E-9		1.0416667		NR [NR] (imputed)	N
971	chr22	50685050	50685051	rs111248040	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	22q13.33		rs111248040-?	NR	1E-5		0.7985765	[0.45-1.15] unit increase	Illumina [9875426] (imputed)	N
971	chr22	50685331	50685332	rs61748567	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q13.33	HDAC10	rs61748567-A	0.02	1E-24	(diacetylspermidine)	0.894	[0.72-1.06] unit increase	Illumina [7750367] (imputed)	N
971	chr22	50695499	50695500	rs2066773	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	22q13.33	MAPK12	rs2066773-A	0.02	1E-6		0.029	[0.017-0.041] unit increase	Illumina [7411206] (imputed)	N
971	chr22	50697118	50697119	rs742184	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	22q13.33	MAPK12	rs742184-T	0.282356176358287	8E-7		0.0029374	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
971	chr22	50699476	50699477	rs561287234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	22q13.33		rs561287234-G	0.032951	6E-10		0.0591961	[0.04-0.078] unit increase	Illumina [13478928] (imputed)	N
971	chr22	50709494	50709495	rs909691	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.33	NR	rs909691-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr22	50709956	50709957	rs34778589	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		22q13.33	MAPK11	rs34778589-A	0.916868	1E-8		0.0143368	[0.0094-0.0192] unit decrease	Affymetrix [12370749]	N
971	chr22	50711773	50711774	rs150685861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.33		rs150685861-?	NR	8E-9				NR [~ 8900000] (imputed)	N
971	chr22	50712272	50712273	rs192890491	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	22q13.33	PLXNB2	rs192890491-G	NR	3E-6		0.512413	[0.27-0.75] unit decrease	Illumina [> 6200000] (imputed)	N
971	chr22	50714288	50714289	rs5771118	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	22q13.33		rs5771118-?	NR	6E-9				NR [~ 8900000] (imputed)	N
971	chr22	50720903	50720904	rs35278490	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	22q13.33	NR	rs35278490-?	NR	6E-6		0.0982	[0.056-0.141] unit decrease	Illumina [at least 560000] (imputed)	N
971	chr22	50722133	50722134	rs11547731	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.33		rs11547731-T	0.35	1E-12				Affymetrix [10369434] (imputed)	N
971	chr22	50722133	50722134	rs11547731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q13.33	PLXNB2	rs11547731-C	0.649926	5E-12		0.016198887	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50722133	50722134	rs11547731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.33	PLXNB2	rs11547731-C	0.64993	3E-12		0.016359163	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50722133	50722134	rs11547731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q13.33	PLXNB2	rs11547731-C	0.650003	6E-14		0.01754449	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50722133	50722134	rs11547731	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.33	PLXNB2	rs11547731-C	0.65	5E-14		0.017649528	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
971	chr22	50722166	50722167	rs28470336	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 198)	19,670 European ancestry individuals	NA	22q13.33		rs28470336-?	NR	7E-10				NR [9705931] (imputed)	N
971	chr22	50722407	50722408	rs79966207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	22q13.33		rs79966207-C	0.17	3E-13		7.3	z score increase	Affymetrix [9061022] (imputed)	N
971	chr22	50722407	50722408	rs79966207	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	22q13.33		rs79966207-C	0.17	9E-14		7.46	z score increase	Affymetrix [9061022] (imputed)	N
971	chr22	50722407	50722408	rs79966207	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	22q13.33	NR	rs79966207-C	0.1789	6E-13				NR [9056863] (imputed)	N
971	chr22	50722407	50722408	rs79966207	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	22q13.33	PLXNB2	rs79966207-T	0.84923	9E-9				Affymetrix, Illumina [NR] (imputed)	N
971	chr22	50722407	50722408	rs79966207	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	22q13.33	PLXNB2	rs79966207-T	0.84923	2E-19				Affymetrix, Illumina [NR] (imputed)	N
971	chr22	50722407	50722408	rs79966207	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	22q13.33	PLXNB2	rs79966207-C	0.1508	9E-9		1.0824854	NR	Affymetrix, Illumina [NR] (imputed)	N
971	chr22	50722407	50722408	rs79966207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	22q13.33	NR	rs79966207-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
971	chr22	50722407	50722408	rs79966207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	22q13.33		rs79966207-?	NR	3E-12				NR [~ 8900000] (imputed)	N
971	chr22	50722407	50722408	rs79966207	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	22q13.33	PLXNB2	rs79966207-C	0.1776	5E-10		1.063	NR	Affymetrix [9154080] (imputed)	N
971	chr22	50722939	50722939	rs146267024	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	22q13.33	NR	rs146267024-?	NR	5E-6		0.064851	[0.037-0.093] unit increase	Affymetrix [9658292] (imputed)	N
971	chr22	50723500	50723501	rs4075185	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	22q13.33		rs4075185-C	NR	1E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
972	chr22	50727791	50727792	rs28573806	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	22q13.33	PLXNB2	rs28573806-C	0.4	4E-116	(Plexin-B2, PLXNB2.9216.100.3)	0.53	[0.49-0.57] unit increase	Affymetrix [10572788] (imputed)	N
972	chr22	50727920	50727921	rs28578714	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	22q13.33	PLXNB2	rs28578714-T	0.6071	4E-14		0.1951	[0.14-0.25] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
972	chr22	50728061	50728062	rs28379706	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXNB2	5,365 Icelandic ancestry individuals	NA	22q13.33		rs28379706-C	0.3869	8E-102		0.394253	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
972	chr22	50728061	50728062	rs28379706	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q13.33		rs28379706-T	0.6064	1E-12		0.1564308	[0.11-0.2] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
972	chr22	50728061	50728062	rs28379706	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	22q13.33		rs28379706-T	0.6064	4E-8		0.08843901	[0.057-0.12] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
972	chr22	50728061	50728062	rs28379706	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	22q13.33		rs28379706-T	0.5959	4E-9		5.90491	z score increase	Affymetrix, Illumina [246710] (imputed)	N
972	chr22	50733622	50733623	rs28394672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.33	Intergenic	rs28394672-A	0.6948	5E-8	(MTAG)	0.0099	[0.0064-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
972	chr22	50734300	50734301	rs28494732	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	22q13.33		rs28494732-?	NR	8E-6		0.35	[0.2-0.5] unit increase	Affymetrix, Illumina [NR] (imputed)	N
972	chr22	50744820	50744821	rs62241216	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	22q13.33		rs62241216-G	NR	1E-15		0.0129	[0.0098-0.016] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
972	chr22	50744820	50744821	rs62241216	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	22q13.33	PLXNB2	rs62241216-G	0.492592	7E-10		0.0136982715	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr22	50752149	50752150	rs68178377	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.33	DENND6B	rs68178377-?	NR	4E-8		0.01223199	[0.0079-0.0166] unit increase	NR [7306098]	N
972	chr22	50815103	50815104	rs73188943	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.33		rs73188943-?	NR	6E-17				NR [~ 8900000] (imputed)	N
972	chr22	50822840	50822841	rs7286685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.33		rs7286685-?	NR	2E-9				NR [~ 8900000] (imputed)	N
972	chr22	50839796	50839797	rs7292268	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.33	PLXNB2	rs7292268-G	0.736875	9E-27	(PLXNB2, 9216_100_3)	0.29094929	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
972	chr22	50839796	50839797	rs7292268	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.33	PLXNB2	rs7292268-G	0.736875	2E-216	(PLXNB2, 10855_55_3)	0.82490236	[0.78-0.87] unit increase	Illumina [> 1000000] (imputed)	N
972	chr22	50840572	50840573	rs9616822	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	22q13.33	NR	rs9616822-G	0.64845	4E-15		0.0158614	[0.012-0.02] unit decrease	Affymetrix [15000001]	N
972	chr22	50840572	50840573	rs9616822	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	22q13.33	PPP6R2	rs9616822-G	0.648626	4E-13		0.0158077	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
972	chr22	50843924	50843925	rs141175264	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	22q13.33		rs141175264-C	0.776	8E-10				Affymetrix [10369434] (imputed)	N
972	chr22	50853625	50853626	rs12162782	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	22q13.33	PPP6R2	rs12162782-T	0.655636	4E-9		0.012882	[0.0086-0.0172] unit decrease	Affymetrix [NR] (imputed)	N
972	chr22	50853625	50853626	rs12162782	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	22q13.33	PPP6R2	rs12162782-?	NR	9E-10		0.0165	[0.012-0.021] unit increase	Affymetrix [5701386] (imputed)	N
973	chr22	50867710	50867711	rs113111175	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	22q13.33	PPP6R2	rs113111175-T	0.1219	9E-6		0.0172	[0.0096-0.0248] unit increase	Affymetrix [19819130] (imputed)	N
973	chr22	50867710	50867711	rs113111175	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	22q13.33	PPP6R2	rs113111175-T	0.1219	5E-7		0.0183	[0.011-0.025] unit increase	Affymetrix [19819130] (imputed)	N
973	chr22	50867710	50867711	rs113111175	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	22q13.33	PPP6R2	rs113111175-T	0.1219	1E-9		0.022	[0.015-0.029] unit increase	Affymetrix [19819130] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-10		0.0266115	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-8		0.0229964	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	1E-10		0.0267646	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-9		0.0251526	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	1E-9		0.0256284	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	8E-9		0.0241425	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	7E-9		0.024097	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total free cholesterol levels	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-8		0.0230669	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611692	1E-8		0.0239233	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611692	4E-8		0.0231042	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Remnant cholesterol (non-HDL, non-LDL -cholesterol)	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-9		0.0250082	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611692	4E-8		0.0227377	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	1E-10		0.0268113	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	8E-10		0.0260748	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	7E-10		0.0261784	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-9		0.0252931	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611692	2E-8		0.0235066	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-10		0.0259956	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-9		0.025289	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	1E-9		0.0259907	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	9E-10		0.0258627	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-10		0.0263479	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-9		0.0246152	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-9		0.0256416	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large LDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-8		0.0238393	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-10		0.0264493	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-8		0.0238282	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-8		0.0227467	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-8		0.0236462	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	5E-9		0.0247824	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	7E-9		0.0242896	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-10		0.0265786	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	6E-9		0.0240201	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-8		0.0227849	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	3E-9		0.0251896	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	2E-8		0.0237576	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	4E-8		0.02286	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	22q13.33		rs9616847-A	0.611728	1E-8		0.0243827	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
973	chr22	50868668	50868669	rs9616847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	22q13.33		rs9616847-T	NR	2E-10		0.0123	[0.0086-0.016] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
973	chr22	50873760	50873761	rs5770859	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	22q13.33	NR	rs5770859-G	NR	3E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix [9000000] (imputed)	N
973	chr22	50874613	50874614	rs5770872	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	22q13.33	NR	rs5770872-?	NR	6E-6		0.0383	[0.022-0.055] unit increase	Illumina [at least 560000] (imputed)	N
973	chr22	50877717	50877718	rs5770908	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	22q13.33	PPP6R2	rs5770908-G	0.674447	4E-16		0.0161576	[0.012-0.02] unit increase	NR [13737936] (imputed)	N
973	chr22	50877717	50877718	rs5770908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	22q13.33		rs5770908-?	NR	1E-16				NR [~ 8900000] (imputed)	N
973	chr22	50877717	50877718	rs5770908	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	22q13.33		rs5770908-?	NR	4E-18		0.0186065	[0.014-0.023] unit increase	Affymetrix [20259828] (imputed)	N
973	chr22	50878926	50878927	rs12171249	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	22q13.33	PPP6R2	rs12171249-A	0.2643	5E-8		0.0141	[0.009-0.0192] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
973	chr22	50880780	50880781	rs5770794	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	22q13.33		rs5770794-?	NR	2E-9		0.0133141	[0.009-0.0176] unit decrease	NR [6912294] (imputed)	N
973	chr22	50895019	50895020	rs5771001	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		22q13.33	NR	rs5771001-T	NR	7E-6		0.264628	[0.15-0.38] unit decrease	Affymetrix, Illumina [at least 398118] (imputed)	N
973	chr22	50895132	50895133	rs4824117	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	22q13.33		rs4824117-?	NR	2E-8				NR [~ 8900000] (imputed)	N
973	chr22	50902389	50902390	rs5771040	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	22q13.33	NR	rs5771040-G	0.660043690698709	2E-6	(IGP64)	0.1595	[0.093-0.226] unit decrease	Illumina [~ 2500000] (imputed)	N
973	chr22	50935535	50935536	rs134974	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bin127 abundance in stool	5,959 Finnish ancestry individuals	NA	22q13.33		rs134974-G	0.365062	2E-8		0.030026	[0.02-0.04] unit increase	Illumina [7980478] (imputed)	N
973	chr22	50949810	50949811	rs543594419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.33	NCAPH2	rs543594419-C	0.018451	4E-22		0.084731616	[0.068-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50949810	50949811	rs543594419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.33	NCAPH2	rs543594419-C	0.018444	6E-34		0.1063552	[0.089-0.124] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50949810	50949811	rs543594419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.33	NCAPH2	rs543594419-C	0.018431	4E-16		0.139124	[0.12-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50949810	50949811	rs543594419	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.33	NCAPH2	rs543594419-C	0.018428	4E-10		0.053653114	[0.037-0.071] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50950076	50950076	rs131821	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	22q13.33	NCAPH2	rs131821-AT	NR	7E-8				Illumina [10806625] (imputed)	N
973	chr22	50956116	50956117	rs200126237	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: Yes (UKB data field 2247_1)	114,318 European ancestry cases, 323,449 European ancestry controls	NA	22q13.33		rs200126237-A	9.234E-4	2E-9		0.47	[0.32-0.62] unit increase	NR [11842647] (imputed)	N
973	chr22	50956116	50956117	rs200126237	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hearing difficulty/problems: No (UKB data field 2247_0)	323,343 European ancestry cases, 114,424 European ancestry controls	NA	22q13.33		rs200126237-A	0.001416	2E-9		0.46	[0.31-0.61] unit decrease	NR [11842647] (imputed)	N
973	chr22	50960100	50960101	rs131814	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	22q13.33	NCAPH2	rs131814-?		9E-6		0.249	[NR] unit decrease	Illumina [5970354] (imputed)	N
973	chr22	50961168	50961169	rs131813	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q13.33	NCAPH2	rs131813-A	0.145621	1E-27	(2'-deoxyuridine)	0.351	[0.29-0.41] unit increase	Illumina [13039987] (imputed)	N
973	chr22	50961853	50961854	rs2782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	22q13.33	NR	rs2782-T	0.389047	2E-41		0.027291	[0.023-0.031] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
973	chr22	50961853	50961854	rs2782	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs2782-C	0.636621	3E-429				Affymetrix, Illumina [24246363] (imputed)	N
973	chr22	50962207	50962208	rs12148	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	22q13.33	NR	rs12148-G	0.655551	1E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix [23037915] (imputed)	N
973	chr22	50962207	50962208	rs12148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs12148-T	0.386147	3E-40				Affymetrix, Illumina [22063850] (imputed)	N
973	chr22	50962781	50962782	rs140523	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	22q13.33		rs140523-?	0.6375	6E-7		0.0417	[0.025-0.058] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
973	chr22	50962781	50962782	rs140523	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	22q13.33		rs140523-?	0.6375	2E-9		0.2524	[0.17-0.34] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
973	chr22	50962781	50962782	rs140523	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	22q13.33		rs140523-?	0.6126	9E-11		0.3845	[0.27-0.5] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
973	chr22	50962781	50962782	rs140523	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	22q13.33		rs140523-?	0.6375	2E-9		0.0975	[0.066-0.129] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
973	chr22	50962781	50962782	rs140523	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	22q13.33		rs140523-?	0.6126	3E-9		0.1398	[0.094-0.186] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
973	chr22	50963356	50963357	rs131808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	22q13.33		rs131808-C	0.737825	5E-56		0.0648605	[0.057-0.073] unit increase	Illumina [13476299] (imputed)	N
973	chr22	50963356	50963357	rs131808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	22q13.33	SCO2	rs131808-C	0.610691	3E-33		0.027224502	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50963356	50963357	rs131808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	22q13.33		rs131808-?	NR	2E-40				NR [~ 8900000] (imputed)	N
973	chr22	50963539	50963540	rs131807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.33	SCO2	rs131807-C	0.572108	4E-12		0.0802967	[0.076-0.084] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50963539	50963540	rs131807	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.33	SCO2	rs131807-C	0.57213	3E-11		0.024685359	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50963964	50963965	rs131806	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	22q13.33	NR	rs131806-G	0.570922	2E-366		0.078357	[0.075-0.082] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
973	chr22	50964152	50964153	rs131805	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TYMP	5,357 Icelandic ancestry individuals	NA	22q13.33		rs131805-T	0.2315	5E-17		0.183996	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
973	chr22	50964152	50964153	rs131805	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q13.33	SCO2	rs131805-T	0.144155	4E-82	(5-methyluridine (ribothymidine))	0.621	[0.56-0.68] unit increase	Illumina [13039987] (imputed)	N
973	chr22	50964152	50964153	rs131805	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	22q13.33	SCO2	rs131805-C	0.7835	7E-9		0.02509494	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50964861	50964862	rs131804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.33	TYMP	rs131804-A	0.571232	3E-9		0.022385586	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50964861	50964862	rs131804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.33	TYMP	rs131804-A	0.571462	6E-9		0.022063099	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50964861	50964862	rs131804	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	22q13.33	TYMP	rs131804-?	NR	1E-40		0.06376	[0.054-0.073] unit increase novel	Illumina [6108953] (imputed)	N
973	chr22	50966633	50966634	rs131801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	22q13.33		rs131801-T	0.73753	7E-68		0.0708448	[0.063-0.079] unit increase	Illumina [13476266] (imputed)	N
973	chr22	50966633	50966634	rs131801	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	22q13.33	TYMP	rs131801-T	0.6104	3E-19		0.0323775	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50966913	50966914	rs470119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	22q13.33	NR	rs470119-T	0.262509	9E-58		0.073725	[0.065-0.083] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
973	chr22	50966913	50966914	rs470119	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	22q13.33	NR	rs470119-T	0.262515	5E-45		0.065162	[0.056-0.074] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
973	chr22	50966913	50966914	rs470119	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	22q13.33	TYMP, KLHDC7B, SCO2, NCAPH2	rs470119-T	0.26	4E-8		0.074	[0.049-0.099] unit decrease	Illumina [561583]	N
973	chr22	50971046	50971047	rs361725	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs361725-C	0.634685	2E-13		0.01690217	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	22q13.33		rs140522-C	NR	6E-104		0.04	[0.036-0.044] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
973	chr22	50971265	50971266	rs140522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	22q13.33		rs140522-C	0.732777	2E-17		0.0298793	[0.023-0.037] unit decrease	Illumina [13479135] (imputed)	N
973	chr22	50971265	50971266	rs140522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	22q13.33		rs140522-C	NR	2E-295		0.0785	[0.074-0.083] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
973	chr22	50971265	50971266	rs140522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	22q13.33		rs140522-C	NR	6E-220		0.0677	[0.064-0.072] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
973	chr22	50971265	50971266	rs140522	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	22q13.33		rs140522-T	0.327	1E-221		0.37	[-0.39--0.35] % decrease	Affymetrix [NR] (imputed)	N
973	chr22	50971265	50971266	rs140522	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q13.33		rs140522-C	NR	1E-14		0.29	[0.21-0.37] unit increase	Illumina [97506867]	N
973	chr22	50971265	50971266	rs140522	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	22q13.33		rs140522-C	NR	1E-10		0.1	[0.061-0.139] unit increase	Illumina [94681438]	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672528	1E-33		0.028906891	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672529	1E-62		0.039950635	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.67249	7E-102		0.051960487	[0.047-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672478	3E-93		0.08188158	[0.074-0.09] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672665	5E-76		0.07582549	[0.068-0.084] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672565	2E-57		0.0926467	[0.088-0.097] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672582	1E-35		0.048831694	[0.041-0.057] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672495	1E-14		0.018388445	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.672501	8E-29		0.026521651	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs140522-C	0.682539	5E-165				Affymetrix, Illumina [24332387] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	22q13.33	NR	rs140522-C	0.672821	1E-151		0.054231	[0.05-0.058] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	22q13.33	NR	rs140522-T	0.267903	2E-16		0.033794	[0.026-0.042] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs140522-C	0.680885	6E-336				Affymetrix, Illumina [20825802] (imputed)	N
973	chr22	50971265	50971266	rs140522	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	22q13.33	NR	rs140522-C	0.672908	6E-298		0.075461	[0.071-0.079] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
973	chr22	50971265	50971266	rs140522	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	22q13.33	ODF3B	rs140522-T	NR	1E-21		1.1158223	NR	Affymetrix, Illumina [8278136] (imputed)	N
973	chr22	50971265	50971266	rs140522	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or multiple sclerosis	3,617 European ancestry diffuse large B-cell lymphoma cases, 9,772 European ancestry multiple sclerosis cases, 24,813 European ancestry controls	NA	22q13.33	LOC440836	rs140522-?	NR	2E-8		1.0869565		Illumina [~ 460000] (imputed)	N
973	chr22	50971265	50971266	rs140522	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	22q13.33	LOC440836	rs140522-?	NR	6E-11		1.1084018		Illumina [~ 460000] (imputed)	N
973	chr22	50971265	50971266	rs140522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.33		rs140522-?	NR	5E-129				NR [~ 8900000] (imputed)	N
973	chr22	50971265	50971266	rs140522	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.33		rs140522-?	NR	1E-251				NR [~ 8900000] (imputed)	N
973	chr22	50971265	50971266	rs140522	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	22q13.33	ODF3B	rs140522-?	NR	6E-54		0.07375	[0.064-0.083] unit increase novel	Illumina [6108953] (imputed)	N
973	chr22	50971265	50971266	rs140522	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	22q13.33	NR	rs140522-C	NR	1E-14		0.0320085	[0.024-0.04] unit decrease	Affymetrix [16832071] (imputed)	N
973	chr22	50971265	50971266	rs140522	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	22q13.33	SCO2, ODF3B, TYMP, NCAPH2	rs140522-T	0.32	3E-9		1.15	[1.10-1.20]	Affymetrix, Illumina [> 10000000] (imputed)	N
973	chr22	50971265	50971266	rs140522	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Red blood cell count	up to 40,258 European ancestry individuals, up to 16,128 African American individuals, up to 15,252 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q13.33	LOC440836	rs140522-?	NR	1E-8				NR [2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q13.33	LOC440836	rs140522-T	NR	1E-6	(Asian)	0.0032	[0.0018-0.0046] unit decrease	NR [2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	22q13.33	LOC440836	rs140522-?	NR	4E-17				NR [2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.6734	3E-16		0.03130561	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.6734	2E-43		0.05229666	[0.045-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.6735	2E-129		0.09079684	[0.083-0.098] unit increase	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q13.33	TYMP, ODF3B	rs140522-C	0.6736	3E-94		0.07741638	[0.07-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
973	chr22	50971265	50971266	rs140522	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	22q13.33	TYMP, ODF3B, SCO2, NCAPH2	rs140522-C	0.67	5E-23	(EA, MCV)	0.287	[0.23-0.35] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
973	chr22	50971265	50971266	rs140522	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	22q13.33	ODF3B, SCO2	rs140522-A	NR	2E-8		1.1	[1.09-1.12]	Illumina [465434]	N
973	chr22	50971508	50971509	rs131798	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.33	TYMP	rs131798-G	0.7725	2E-11	(TYMP, 11361_73_3)	0.20441414	[0.14-0.26] unit increase	Illumina [> 1000000] (imputed)	N
973	chr22	50971751	50971752	rs131794	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q13.33	TYMP	rs131794-A	0.015	4E-16	(uridine)	0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
973	chr22	50971751	50971752	rs131794	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	22q13.33	ECGF1	rs131794-A	NR	1E-15		0.0	[0.003-0.005] fl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
973	chr22	50972540	50972541	rs5770768	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	22q13.33	ODF3B, KLHDC7B	rs5770768-T	0.845638	4E-23	(5-methyluridine (ribothymidine))	0.312	[0.25-0.37] unit increase	Illumina [13039987] (imputed)	N
973	chr22	50976753	50976754	rs131788	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	22q13.33	ODF3B	rs131788-A	0.189	9E-6	(Fat mass )	0.04	[NR] kg increase	Illumina [899892]	N
973	chr22	50980070	50980071	rs131785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	22q13.33	NR	rs131785-A	0.701881	5E-12		0.014793	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
973	chr22	50982456	50982457	rs131781	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	22q13.33	KLHDC7B, CTA-384D8.31, CTA-384D8.35	rs131781-G	0.366305	3E-9		0.013716078	[0.0092-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
973	chr22	50982456	50982457	rs131781	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs131781-A	0.621656	4E-11				Affymetrix, Illumina [23467995] (imputed)	N
973	chr22	50982538	50982539	rs131780	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	22q13.33	ODF3B, KLHDC7B	rs131780-?	NR	4E-10		0.03247	[0.022-0.043] unit increase novel	Illumina [6108953] (imputed)	N
974	chr22	50987496	50987497	rs749405486	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	22q13.33	KLHDC7B	rs749405486-A	0.06	3E-10	(additive)	1.92	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
974	chr22	50988104	50988105	rs36062310	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	22q13.33	KLHDC7B	rs36062310-A	4.15	2E-29	(additive)	1.15	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
974	chr22	50988104	50988105	rs36062310	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	22q13.33		rs36062310-?	NR	8E-16		8.0551195	z score increase	Affymetrix [NR] (imputed)	N
974	chr22	50991032	50991033	rs131777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	22q13.33	SYCE3	rs131777-T	0.634193	6E-10		0.0146601405	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
974	chr22	50991032	50991033	rs131777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	22q13.33	SYCE3	rs131777-T	0.634104	2E-26		0.025765562	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	50991032	50991033	rs131777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	22q13.33	SYCE3	rs131777-T	0.634215	9E-19		0.0446438	[0.04-0.049] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	50991032	50991033	rs131777	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	22q13.33	SYCE3	rs131777-T	0.634204	4E-12		0.01645536	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	50991032	50991033	rs131777	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	22q13.33	SYCE3	rs131777-T	0.6343	4E-39		0.04798421	[0.041-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
974	chr22	50991032	50991033	rs131777	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	22q13.33	SYCE3	rs131777-T	0.6344	6E-25		0.03793572	[0.031-0.045] unit increase	Affymetrix [~ 2500000] (imputed)	N
974	chr22	50993224	50993225	rs9306547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	22q13.33	SYCE3	rs9306547-C	0.509277	6E-22		0.023786288	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	51017352	51017353	rs5770917	18820697	Miyagawa T	2008-09-28	Nat Genet	Variant between CPT1B and CHKB associated with susceptibility to narcolepsy.	Narcolepsy	222 Japanese ancestry cases, 389 Japanese ancestry controls	274 East Asian ancestry cases, 499 East Asian ancestry controls, 388 European ancestry cases, 397 European ancestry controls, 86 African American cases, 98 African American controls	22q13.33	CPT1B	rs5770917-C	0.17	6E-8		1.63	[1.37-1.95]	Affymetrix [249133]	N
974	chr22	51024307	51024308	rs131750	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	22q13.33	NR	rs131750-?	NR	2E-6		0.0787188	[0.046-0.111] unit increase	NR [13958389] (imputed)	N
974	chr22	51038807	51038843	rs1239627205	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	22q13.33	MAPK8IP2, CHKB	rs1239627205-G		3E-6		1.086	[1.049-1.124]	Illumina [4498586] (imputed)	N
974	chr22	51040545	51040546	rs131737	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	22q13.33	MAPK8IP2	rs131737-T	0.6791	7E-6		0.0387	[0.022-0.056] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr22	51042335	51042336	rs116947359	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.33	CHKB	rs116947359-G	0.9340625	1E-7	(CHKB, 7761_125_3)	0.2660444	[0.17-0.36] unit increase	Illumina [> 1000000] (imputed)	N
974	chr22	51045815	51045816	rs131734	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	527 Japanese ancestry men	NA	22q13.33	MAPK8IP2	rs131734-C	0.25	4E-7		1.8	[1.11-2.49] unit increase	Illumina [544877]	N
974	chr22	51046188	51046189	rs11091008	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	22q13.33	NR	rs11091008-T	0.129	5E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
974	chr22	51063476	51063477	rs6151429	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	22q13.33	NR	rs6151429-C	0.0784	8E-9	(ARSA)	0.002745	NR unit decrease	Illumina [1671387] (imputed)	N
974	chr22	51063476	51063477	rs6151429	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	22q13.33	ARSA	rs6151429-C	0.08	9E-13	(O-sulfo-L-tyrosine)	0.184	[0.13-0.23] unit increase	Illumina [7750367] (imputed)	N
974	chr22	51063476	51063477	rs6151429	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q13.33	ARSA	rs6151429-T	0.93	7E-18	(X-11423--O-sulfo-L-tyrosine)	0.029	[0.023-0.035] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
974	chr22	51063476	51063477	rs6151429	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	22q13.33	ARSA	rs6151429-T	0.93	5E-13	(X-12749)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
974	chr22	51065599	51065600	rs6151412	28749367	Gondalia R	2017-06-08	Environ Health Perspect	Genome-wide Association Study of Susceptibility to Particulate Matter-Associated QT Prolongation.	QT interval (ambient particulate matter interaction)	14,889 European ancestry individuals, 5,707 African American individuals, 1,562 Hispanic individuals	NA	22q13.33	ARSA	rs6151412-G	0.95	1E-6		3.88	[2.33-5.43] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
974	chr22	51080193	51080194	rs9616896	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	22q13.33		rs9616896-C	0.200945	3E-9		0.016718084	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	51083117	51083118	rs9616897	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF and FVIII levels	Up to 42,379 European ancestry individuals, up to 4,500 African American individuals, up to 773 Asian ancestry individuals, up to 1,440 Hispanic individuals	NA	22q13.33	ARSA	rs9616897-?	NR	5E-8				Affymetrix, Illumina [up to 13887196] (imputed)	N
974	chr22	51088180	51088181	rs7287312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	22q13.33		rs7287312-?	NR	1E-11				NR [~ 8900000] (imputed)	N
974	chr22	51088180	51088181	rs7287312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	22q13.33		rs7287312-?	NR	5E-12				NR [~ 8900000] (imputed)	N
974	chr22	51094925	51094926	rs9616810	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SHANK3	5,365 Icelandic ancestry individuals	NA	22q13.33		rs9616810-T	0.2543	3E-51		0.314091	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
974	chr22	51094925	51094926	rs9616810	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	22q13.33		rs9616810-T	NR	7E-11		0.0141	[0.0098-0.0184] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
974	chr22	51094925	51094926	rs9616810	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	22q13.33	ARSA, SHANK3	rs9616810-T	0.22	2E-14		7.67	z-score increase	Affymetrix [4314223] (imputed)	N
974	chr22	51095285	51095286	rs6009946	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.33	ENSG00000212569	rs6009946-T	NR	3E-8		0.01967859	[0.013-0.027] unit decrease	Affymetrix [NR]	N
974	chr22	51096311	51096311	rs397702668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	22q13.33		rs397702668-AC	NR	5E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
974	chr22	51098763	51098764	rs6010042	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	22q13.33	SHANK3	rs6010042-G	0.748125	7E-33	(SHANK3, 13242_134_3)	0.32654944	[0.27-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
974	chr22	51101898	51101899	rs10854884	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	22q13.33		rs10854884-?	NR	9E-15				NR [~ 8900000] (imputed)	N
974	chr22	51101898	51101899	rs10854884	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.33	ENSG00000212569	rs10854884-A	NR	2E-8		0.016640976	[0.011-0.022] unit increase	Affymetrix [NR]	N
974	chr22	51101937	51101938	rs6010044	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		22q13.33	ARSA, SHANK3	rs6010044-?	NR	3E-8		0.0074	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
974	chr22	51101937	51101938	rs6010044	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	22q13.33	SHANK3, CPT1B, ARSA	rs6010044-A	0.8	3E-8	(EA)	0.008	[0.006-0.01] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
974	chr22	51103691	51103692	rs8138460	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	22q13.33	ENSG00000212569	rs8138460-?	NR	1E-8		5.712	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
974	chr22	51104679	51104680	rs9616906	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	22q13.33		rs9616906-A	0.4515	3E-8		40.756695	z score increase	NR [6814003]	N
974	chr22	51104679	51104680	rs9616906	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.33		rs9616906-A	0.4477	8E-18		0.0122	[0.0095-0.0149] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
974	chr22	51104679	51104680	rs9616906	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	22q13.33	AC000050.2	rs9616906-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
974	chr22	51106978	51106979	rs9616907	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	22q13.33	NR	rs9616907-G	0.568917	3E-45				Affymetrix, Illumina [17210439] (imputed)	N
974	chr22	51106978	51106979	rs9616907	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	22q13.33	Y_RNA	rs9616907-C	0.4414	2E-11		0.02449961	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
974	chr22	51108508	51108509	rs13053850	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	22q13.33	SHANK3	rs13053850-A	0.44048	2E-38		0.029556936	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
974	chr22	51108508	51108509	rs13053850	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	22q13.33	NR	rs13053850-G	0.558752	2E-48		0.028375	[0.025-0.032] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
974	chr22	51110927	51110928	rs71311699	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	22q13.33	SHANK3	rs71311699-T	0.511657	6E-15		0.017772896	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
974	chr22	51112360	51112361	rs75347843	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		22q13.33	SHANK3	rs75347843-?	NR	4E-8		0.0082	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
974	chr22	51112360	51112361	rs75347843	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	22q13.33	SHANK3	rs75347843-A	0.19	2E-10		0.0084	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
974	chr22	51117136	51117137	rs9616914	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	22q13.33	SHANK3	rs9616914-?	NR	3E-9		0.012076274	[0.0081-0.0161] unit increase	NR [7306098]	N
974	chr22	51117136	51117137	rs9616914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	22q13.33	Intergenic	rs9616914-A	0.4563	1E-13	(MTAG)	0.0134	[0.0099-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
974	chr22	51117136	51117137	rs9616914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	22q13.33	Intergenic	rs9616914-A	0.4562	1E-17	(MTAG)	0.0141	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
975	chr22	51121415	51121416	rs7286601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	22q13.33	Intergenic	rs7286601-T	0.5341	2E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
975	chr22	51121415	51121416	rs7286601	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	22q13.33	NR	rs7286601-T	0.5445	2E-9		0.01354032	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
975	chr22	51134887	51134888	rs8138473	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	22q13.33	Intergenic	rs8138473-T	0.2191	3E-12	(MTAG)	0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
975	chr22	51135594	51135595	rs28735993	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.33		rs28735993-A	0.8844	3E-13		0.0162	[0.012-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr22	51141160	51141161	rs141909966	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHKB	5,360 Icelandic ancestry individuals	NA	22q13.33		rs141909966-T	0.0206	6E-22		0.619431	[0.49-0.75] unit decrease	Illumina [7506463] (imputed)	N
975	chr22	51148994	51148995	rs9616946	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	22q13.33	NR	rs9616946-?	NR	2E-7		5.217	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
975	chr22	51149319	51149320	rs1024374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.33		rs1024374-C	0.5338	7E-20	(conditional-joint)	0.013	[0.01-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
975	chr22	51150472	51150473	rs5770820	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	22q13.33	SHANK3	rs5770820-A	0.209	2E-8		5.63	NR z score decrease decrease	Illumina [up to 12595966] (imputed)	N
975	chr22	51150472	51150473	rs5770820	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	22q13.33	SHANK3	rs5770820-A	NR	4E-9		0.020465491	[0.014-0.027] unit decrease	Affymetrix [NR]	N
975	chr22	51151630	51151631	rs9616947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	22q13.33		rs9616947-T	0.3818	4E-20		0.0134	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
975	chr22	51151630	51151631	rs9616947	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	22q13.33	Intergenic	rs9616947-T	0.3818	2E-20	(MTAG)	0.0126	[0.0099-0.0153] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
975	chr22	51151723	51151724	rs6010061	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Memory dysfunction in frontotemporal lobe dementia	139 European ancestry cases, 243 European ancestry controls	NA	22q13.33	SHANK3	rs6010061-T	0.36	8E-6		2.173913	[1.25-9.09]	Illumina [7033776] (imputed)	N
975	chr22	51181379	51181380	rs199878967	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	22q13.33	NR	rs199878967-?	NR	2E-9		5.973	NR z score increase	Illumina [at least 830937] (imputed)	N
585	chr3	85930	85930	rs569528903	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	3p26.3		rs569528903-?	NR	8E-6		1.1593806	[1.08639524422731-1.23726920961563]	Illumina [up to 7827597] (imputed)	N
585	chr3	89510	89511	rs991639	29082582	Almli LM	2017-10-30	Addict Biol	Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma-exposed populations.	Problematic alcohol use in trauma-exposed individuals	1,036 African American individuals	828 European ancestry individuals, 108 African ancestry individuals, 282 Hispanic and Native American individuals, 170 other ancestry individuals, 6 Asian individuals	3p26.3	CHL1	rs991639-A	0.13	1E-6	(AA, initial)	2.24	[1.34-3.14] unit increase	Illumina [501278]	N
585	chr3	93077	93078	rs13077895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHL1	5,364 Icelandic ancestry individuals	NA	3p26.3		rs13077895-G	0.3513	7E-22		0.18708	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
585	chr3	93077	93078	rs13077895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHL1	5,357 Icelandic ancestry individuals	NA	3p26.3		rs13077895-G	0.3513	1E-22		0.188136	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
585	chr3	93077	93078	rs13077895	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p26.3	CHL1	rs13077895-A	0.64328125	8E-14	(CHL1, 3601_54_3)	0.190407	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
585	chr3	93077	93078	rs13077895	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p26.3	CHL1	rs13077895-A	0.64328125	7E-13	(CHL1, 8958_51_3)	0.18331695	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
585	chr3	107775	107776	rs1015456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.3	CHL1	rs1015456-C	0.392	3E-16	(Neural cell adhesion molecule L1-like protein, CHL1.3601.54.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
585	chr3	108992	108993	rs9841287	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p26.3	CHL1	rs9841287-A	0.8272	7E-9		0.003253	[0.0022-0.0043] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
586	chr3	143981	143982	rs1016162	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p26.3	Intergenic	rs1016162-T	0.3194	5E-10	(MTAG)	0.0119	[0.0082-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr3	149178	149179	rs17050452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p26.3	Intergenic	rs17050452-T	0.3227	3E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
586	chr3	156698	156699	rs17032691	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.3	NR	rs17032691-G	0.01045	3E-8	(CPQ)	0.0322	NR unit increase	Illumina [1671387] (imputed)	N
586	chr3	172476	172477	rs6795349	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	3p26.3	CHL1	rs6795349-G	0.03	2E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
586	chr3	191046	191047	rs10510181	21216876	Sharma S	2011-01-07	Hum Mol Genet	Genome-wide association studies of adolescent idiopathic scoliosis suggest candidate susceptibility genes.	Adolescent idiopathic scoliosis	1,113 European, African, Oceania, Hispanic and other ancestry individuals from 418 families	562 European ancestry cases, 666 European ancestry controls, 137 cases, 2,126 controls	3p26.3	LOC642891, CHL1	rs10510181-A	0.33	8E-7	(EA)	1.37	[1.20-1.58]	Illumina [326498]	N
586	chr3	211744	211745	rs6442427	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3p26.3	NR	rs6442427-C	0.227	2E-7	(Unifrac metric)	5.0579796	NR z-score increase	Illumina [5293637] (imputed)	N
586	chr3	216034	216035	rs17328201	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p26.3	CHL1	rs17328201-T	0.812	2E-9		0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr3	222903	222904	rs2063886	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p26.3	CHL1	rs2063886-A	0.308	5E-8		0.007	[0.0045-0.0095] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
586	chr3	227302	227303	rs6442537	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p26.3	Intergenic	rs6442537-G	0.7939	2E-8		0.0156	[0.01-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
586	chr3	236501	236502	rs56032805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p26.3	Intergenic	rs56032805-A	0.5849	2E-10	(MTAG)	0.0107	[0.0074-0.014] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr3	244948	244949	rs6769747	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3p26.3	NR	rs6769747-?	NR	1E-7	(CHL1)	0.16	[0.1-0.22] unit increase	Illumina [4020654] (imputed)	N
586	chr3	250757	250758	rs9809528	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3p26.3	CHL1	rs9809528-G	0.4383	5E-8		1.043	NR	Affymetrix [9154080] (imputed)	N
586	chr3	252343	252344	rs4685448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p26.3		rs4685448-?	NR	8E-14				NR [~ 8900000] (imputed)	N
586	chr3	252343	252344	rs4685448	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p26.3	Intergenic	rs4685448-A	0.4454	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
586	chr3	253918	253919	rs11917787	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	NR	rs11917787-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
586	chr3	260756	260757	rs35210560	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	3p26.3	NR	rs35210560-C	0.283743	3E-6		0.68471986	[0.42-0.95] unit increase	Illumina [at least 621854] (imputed)	N
587	chr3	271090	271091	rs3872650	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 2 levels	252 European ancestry individuals	NA	3p26.3		rs3872650-A	NR	1E-6		0.97944	[0.59-1.37] unit decrease	Illumina [NR] (imputed)	N
587	chr3	274314	274315	rs17010587	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	3p26.3	NR	rs17010587-C	NR	1E-6		10.16	[NR]	Illumina [NR] (imputed)	N
587	chr3	281277	281280	rs767055246	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p26.3	NR	rs767055246-T	0.7846	6E-7		1.3136	[0.8-1.83] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
587	chr3	281277	281280	rs767055246	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	3p26.3	NR	rs767055246-T	0.7846	6E-7		1.3136	[0.8-1.83] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
587	chr3	312348	312349	rs6764363	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	3p26.3	CHL1	rs6764363-?	0.36	6E-6	(Recessive)	1.19	[1.10-1.28]	Affymetrix [319222]	N
588	chr3	397552	397553	rs892295	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.3	CHL1	rs892295-A	0.033	4E-6	(ALT )	0.03	[NR] U/L increase	Illumina [899892]	N
588	chr3	397552	397553	rs892295	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.3	CHL1	rs892295-A	0.033	1E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
588	chr3	416440	416441	rs3773384	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Parkinsonism in frontotemporal lobe dementia	184 European ancestry cases, 198 European ancestry controls	NA	3p26.3	CHL1	rs3773384-C	0.58	4E-6		2.3255813	[1.28-12.5]	Illumina [7033776] (imputed)	N
588	chr3	422898	422899	rs11129708	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.3	NR	rs11129708-?	NR	5E-37				Affymetrix [NR]	N
588	chr3	435142	435143	rs11129766	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p26.3	Intergenic	rs11129766-?	NR	2E-6		2.797	[NR]	Affymetrix [492217] (imputed)	N
590	chr3	736226	736227	rs1586218	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	CNTN6	rs1586218-?	NR	9E-7	(sorbitol)	0.2115978	[0.13-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
591	chr3	792826	792827	rs74427637	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p26.3	NR	rs74427637-?	NR	2E-6	(Native Hawaiian)	1.2837	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
591	chr3	821212	821213	rs115266745	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (diclofenac)	67 European ancestry cases, 10,588 European ancestry controls	NA	3p26.3	NR	rs115266745-?		7E-7		6.8	3.19-14.48	Illumina [505740] (imputed)	N
591	chr3	883850	883851	rs4684585	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	3p26.3	CNTN6, LOC402123, CHL1	rs4684585-G	0.43	9E-7	(LDL, sum)			Illumina [~ 2500000] (imputed)	N
591	chr3	898660	898661	rs35964523	20339536	Barber MJ	2010-03-22	PLoS One	Genome-wide association of lipid-lowering response to statins in combined study populations.	Response to statin therapy	3,928 European ancestry individuals	NA	3p26.3	CNTN6, LOC402123, CHL1	rs35964523-T	0.42	8E-6	(chol, sum)			Illumina [~ 2500000] (imputed)	N
591	chr3	916081	916082	rs1568749	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Serum total cholesterol levels	6,545 European ancestry individuals	NA	3p26.3		rs1568749-T	0.24	8E-7		0.18	[0.13-0.3] unit decrease	Illumina [19468843] (imputed)	N
592	chr3	926344	926345	rs115061173	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	End-stage renal disease in Type 1 diabetics	2,187 European ancestry cases, 12,101 European ancestry controls	NA	3p26.3	LINC01266	rs115061173-A	0.014	4E-8		9.4	[NR]	Illumina [up to 49000000] (imputed)	N
592	chr3	932901	932902	rs13078376	29621232	Spracklen CN	2018-04-05	PLoS Genet	Identification and functional analysis of glycemic trait loci in the China Health and Nutrition Survey.	Fasting blood insulin	5,786 Chinese ancestry individuals	NA	3p26.3	CNTN6	rs13078376-C	0.69	3E-7		0.124	[0.077-0.171] unit increase	Illumina [8045193] (imputed)	N
592	chr3	976778	976779	rs36106334	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	3p26.3	NR	rs36106334-G	0.2921	4E-6		0.1536	[0.088-0.219] unit decrease	Illumina [10677593] (imputed)	N
592	chr3	1046037	1046038	rs6764623	23650146	Tang W	2013-05-05	Genet Epidemiol	A genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Venous thromboembolism	1,618 European ancestry cases, 42,881 European ancestry controls	3,231 European ancestry cases, 3,536 European ancestry controls	3p26.3	CNTN6	rs6764623-C	0.74	2E-6		1.18	[1.10-1.26]	Affymetrix, Illumina [2543885] (imputed)	N
593	chr3	1117232	1117233	rs2729117	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	3p26.3	RN7SL120P	rs2729117-A	0.28	9E-6		0.84	NR unit decrease	Illumina [NR] (imputed)	N
593	chr3	1129818	1129819	rs76090503	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	CNTN6	rs76090503-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
593	chr3	1141780	1141781	rs139701434	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	3p26.3	NR	rs139701434-A	0.020665	2E-6		2.537798	[1.55-3.52] unit increase	Illumina [at least 621854] (imputed)	N
593	chr3	1152435	1152436	rs142892876	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Diastolic blood pressure	19,546 British ancestry individuals from 6863 families.	NA	3p26.3	CNTN6	rs142892876-T	0.001	5E-8		10.688255	[6.85-14.53] mmHg increase	Illumina [24111857] (imputed)	N
593	chr3	1161938	1161939	rs34918453	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	3p26.3	CNTN6	rs34918453-?	0.306	3E-6		12.7	[7.67-17.73] unit increase	Illumina [7663546] (imputed)	N
593	chr3	1162172	1162173	rs116546495	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		3p26.3	CNTN6	rs116546495-G	0.0300481	4E-7		1.55757	[0.97-2.14] unit increase	Illumina [640625] (imputed)	N
594	chr3	1225235	1225236	rs12489312	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p26.3	NR	rs12489312-G	0.145	1E-6	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
594	chr3	1269679	1269680	rs62229416	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p26.3	NR	rs62229416-A	0.089	5E-6	(IFNalpha_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
594	chr3	1301129	1301130	rs9815195	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.3	NR	rs9815195-?	NR	7E-7				Affymetrix [5486770] (imputed)	N
595	chr3	1316387	1316388	rs7625523	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	CNTN4	rs7625523-?	NR	3E-6	(asparagine)	0.18920614	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr3	1318636	1318637	rs3852025	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	CNTN4	rs3852025-?	NR	1E-6	(glutamine)	0.26609278	[0.16-0.37] unit decrease	Affymetrix [at least 2500000] (imputed)	N
595	chr3	1345424	1345425	rs9861887	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p26.3	CNTN6	rs9861887-T	0.76	9E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
595	chr3	1397372	1397373	rs17193334	27529621	Otowa T	2016-08-16	PLoS One	The First Pilot Genome-Wide Gene-Environment Study of Depression in the Japanese Population.	Depressive symptoms (stressful life events interaction)	320 Japanese ancestry individuals	439 Japanese ancestry individuals	3p26.3	CNTN6	rs17193334-A	0.065	6E-6		0.109	[0.064-0.154] unit increase	Affymetrix [534848]	N
595	chr3	1414126	1414127	rs145045076	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	3p26.3		rs145045076-G	0.01558	1E-6		2.881	[1.886-4.401]	Affymetrix [7975321] (imputed)	N
595	chr3	1418303	1418304	rs3841919	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p26.3	CNTN6	rs3841919-C	0.0122708990808938	7E-7	(F_Sutterellaceae_HB)	1.58274	[0.96-2.21] unit decrease	Illumina [7711310] (imputed)	N
595	chr3	1425167	1425168	rs17038463	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (continuous)	490 African American individuals, 443 European ancestry individuals, 99 Hispanic individuals, 17 individuals	NA	3p26.3	CNTN6	rs17038463-G		1E-6		0.173	unit increase	Affymetrix [NR]	N
595	chr3	1426773	1426774	rs116256240	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	3p26.3	CNTN6	rs116256240-?	NR	2E-6	(EA)	0.173	[0.1-0.24] unit increase	Illumina [7176022] (imputed)	N
596	chr3	1470891	1470892	rs17038979	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	CNTN4	rs17038979-?	NR	2E-7	(CE 16:0)	0.42232653	[0.26-0.58] unit increase	Affymetrix [at least 2500000] (imputed)	N
596	chr3	1492048	1492049	rs11915634	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3p26.3	CNTN6	rs11915634-T	NR	3E-10	(Unclassified Marinilabiliaceae)	1.3	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
596	chr3	1492048	1492049	rs11915634	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3p26.3	CNTN6	rs11915634-T	NR	3E-10	(Marinilabiliaceae family)	1.3	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
596	chr3	1500041	1500042	rs13082351	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3p26.3	NR	rs13082351-?	NR	8E-6	(Richness)	12.4219	[7-17.84] unit decrease	Illumina [5293637] (imputed)	N
596	chr3	1500041	1500042	rs13082351	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3p26.3	NR	rs13082351-?	NR	7E-6	(Chao1 richness estimate)	0.492079	[0.28-0.71] unit decrease	Illumina [5293637] (imputed)	N
596	chr3	1500041	1500042	rs13082351	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3p26.3	NR	rs13082351-?	NR	3E-6	(ACE metric)	0.840585	[0.49-1.19] unit decrease	Illumina [5293637] (imputed)	N
596	chr3	1567911	1567912	rs192339095	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p26.3	NR	rs192339095-?	NR	4E-8				Illumina [7760689] (imputed)	N
597	chr3	1587150	1587151	rs2728007	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	3p26.3	NR	rs2728007-C	0.02755	3E-7		3.755	[3.21-4.3]	Illumina [281811]	N
597	chr3	1623392	1623393	rs402675	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Estradiol levels	1,583 European ancestry female individuals	NA	3p26.3	intergenic	rs402675-A	0.50	6E-6		0.097	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
597	chr3	1632352	1632353	rs4684256	24871463	Armstrong DL	2014-05-29	Genes Immun	GWAS identifies novel SLE susceptibility genes and explains the association of the HLA region.	Systemic lupus erythematosus	725 European ancestry cases, 2,438 European ancestry controls	NA	3p26.3	CNTN6	rs4684256-T	0.28	1E-7		1.48	[1.382-1.58]	Illumina [NR]	N
597	chr3	1670300	1670301	rs4143127	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p26.3	NR	rs4143127-?		7E-6				Illumina [4322238] (imputed)	N
598	chr3	1717495	1717496	rs115091509	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	3p26.3		rs115091509-C	NR	2E-6		1.1482375	[1.09-1.20]	Illumina [11600722] (imputed)	N
598	chr3	1741764	1741765	rs73001827	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3p26.3	intergenic	rs73001827-?	NR	1E-6	(SF7)			Affymetrix [5476100] (imputed)	N
598	chr3	1781515	1781516	rs17029206	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	3p26.3	CNTN4, CNTN6	rs17029206-T	0.602	6E-9		1.26	NR	Affymetrix, Illumina [4996193] (imputed)	N
598	chr3	1820083	1820084	rs62261481	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p26.3	Intergenic	rs62261481-A	0.795	3E-8	(MTAG)	0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
599	chr3	1839692	1839693	rs10510217	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	3p26.3	CNTN4	rs10510217-?	NR	3E-6		0.004	[NR] unit increase	Illumina [478011]	N
599	chr3	1849170	1849171	rs13088785	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	CNTN6	rs13088785-?	NR	6E-6	(taurine)	0.8602381	[0.49-1.23] unit decrease	Affymetrix [at least 2500000] (imputed)	N
599	chr3	1855434	1855435	rs9826551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p26.3	Intergenic	rs9826551-T	0.5733	3E-8		0.0109	[0.007-0.0148] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
599	chr3	1865709	1865710	rs9825865	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	3p26.3		rs9825865-T	NR	4E-11	(additive)	0.712	[0.501-0.501] unit decrease	Illumina [5894709] (imputed)	N
599	chr3	1892164	1892165	rs1229844189	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3p26.3		rs1229844189-C	NR	9E-6		0.01523		Affymetrix, Illumina [62056310] (imputed)	N
599	chr3	1897972	1897973	rs2727943	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	3p26.3	NA	rs2727943-T	0.2184	8E-6		0.1432	[0.05462-0.3752]	Illumina [243345]	N
599	chr3	1897972	1897973	rs2727943	22205951	Kerner B	2011-12-21	PLoS One	Genome-wide association study in bipolar patients stratified by co-morbidity.	Bipolar disorder	1,000 European ancestry cases, 1,034 European ancestry controls	NA	3p26.3	intergenic	rs2727943-?	NR	3E-8	(Latent Class 2)			Affymetrix [728331]	N
599	chr3	1937148	1937149	rs12635725	30456828	Khramtsova EA	2018-11-20	Am J Med Genet B Neuropsychiatr Genet	Sex differences in the genetic architecture of obsessive-compulsive disorder.	Obsessive-compulsive disorder	1,249 European ancestry male cases, 2,789 European ancestry male controls, 1,525 European ancestry female cases, 4,307 European ancestry female controls	NA	3p26.3	Intergenic	rs12635725-?		6E-8	(male)	0.291	[0.19-0.4] unit decrease	NR [~ 5500000] (imputed)	N
599	chr3	1945735	1945736	rs138103574	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.3	NR	rs138103574-T	0.01916	9E-9	(LTF)	0.3012	NR unit increase	Illumina [1671387] (imputed)	N
599	chr3	1946440	1946441	rs62245312	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3p26.3		rs62245312-C	NR	2E-6		3.2231	[1.92-4.53] unit increase	Illumina [NR] (imputed)	N
599	chr3	1964638	1964639	rs11718454	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p26.3	RPL21P17, CNTN4, CNTN4-AS2	rs11718454-T	NR	4E-6	(sleep offset, weekdays)	0.6609	[0.38-0.94] unit increase	Affymetrix [7141204] (imputed)	N
600	chr3	1994643	1994644	rs6442708	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3p26.3	LOC727810, CNTN4	rs6442708-A	0.053	4E-7		3.35	[2.04-5.5]	Illumina [1556551]	N
600	chr3	2001174	2001175	rs12631510	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3p26.3	CNTN6, CNTN4	rs12631510-?	NR	3E-7	(TransMeta)			Illumina [3153931] (imputed)	N
600	chr3	2004250	2004251	rs17005939	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3p26.3	CNTN6, CNTN4	rs17005939-C	0.35	8E-8	(Hispanic/Latino)	0.1	[0.061-0.139] unit decrease	Illumina [up to 13042663] (imputed)	N
600	chr3	2034354	2034355	rs2729313	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	3p26.3	intergenic	rs2729313-T	0.075	8E-6		0.169	[0.095-0.243] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
600	chr3	2044395	2044396	rs35367356	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	3p26.3	intergenic	rs35367356-A	NR	7E-6		4.492	z score decrease	Illumina [5060354] (imputed)	N
600	chr3	2046764	2046765	rs13067896	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	3p26.3	intergenic	rs13067896-A	NR	7E-6		4.494	z score decrease	Illumina [5060354] (imputed)	N
600	chr3	2048344	2048345	rs73807529	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	3p26.3	intergenic	rs73807529-A	NR	9E-6		4.435	z score decrease	Illumina [5060354] (imputed)	N
600	chr3	2060183	2060184	rs115099709	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3p26.3	NR	rs115099709-G	0.04	4E-6		0.83	[0.75-0.91]	Illumina [8468885] (imputed)	N
600	chr3	2076966	2076967	rs4437130	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced pancreatitis in inflammatory bowel disease	18 Japanese ancestry cases, 1,202 Japanese ancestry controls	NA	3p26.3	CNTN4	rs4437130-?	NR	2E-7		6.8	[3.3-14.1]	Affymetrix [> 5000000] (imputed)	N
600	chr3	2092105	2092106	rs77360121	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	3p26.3	CNTN6, CNTN4	rs77360121-G	0.08	4E-6		1.53		Illumina [8974355] (imputed)	N
601	chr3	2135637	2135638	rs2729284	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p26.3	CNTN4	rs2729284-T	0.53140625	1E-10	(CNTN4, 3298_52_2)	0.15676595	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
601	chr3	2140377	2140378	rs13071423	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN4	5,364 Icelandic ancestry individuals	NA	3p26.3		rs13071423-A	0.1668	9E-18		0.214149	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
601	chr3	2140377	2140378	rs13071423	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.3	NR	rs13071423-A	0.198	5E-16	(Contactin-4, CNTN4.3298.52.2)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
601	chr3	2186421	2186422	rs62246964	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p26.3	CNTN4, CNTN4-AS2, RPL21P17	rs62246964-C	NR	8E-6	(daytime resting duration)	0.09162	[0.051-0.132] unit increase	Affymetrix [7141204] (imputed)	N
601	chr3	2194092	2194093	rs75585701	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CNTN4	rs75585701-?	NR	1E-9		2.5745	[NR] unit increase	Affymetrix [NR] (imputed)	N
602	chr3	2236856	2236857	rs4685495	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	1,505 Ashkenazi Jewish founder cases, 2,553 Ashkenazi Jewish founder controls	NA	3p26.3	CNTN4	rs4685495-A	NR	3E-6		1.29	[NR]	Illumina [up to 9792010] (imputed)	N
602	chr3	2264608	2264609	rs4685500	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Middle childhood and early adolescence aggressive behavior	16,311 European ancestry individuals	NA	3p26.3	CNTN4	rs4685500-T	0.1875	8E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
602	chr3	2273250	2273251	rs115483388	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p26.3		rs115483388-A	NR	4E-6		4.6236897	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
602	chr3	2281103	2281104	rs1178526	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN4	5,364 Icelandic ancestry individuals	NA	3p26.3		rs1178526-C	0.1972	2E-10		0.153334	[0.11-0.2] unit increase	Illumina [7506463] (imputed)	N
603	chr3	2365025	2365026	rs11713899	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p26.3	NR	rs11713899-C	0.171	2E-10		0.00912317	[0.0063-0.0119] unit increase	NR [9732723] (imputed)	N
603	chr3	2365025	2365026	rs11713899	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p26.3	NR	rs11713899-C	0.171	3E-8		0.018718842	[0.012-0.025] unit increase	NR [~ 10000000] (imputed)	N
603	chr3	2423126	2423127	rs17013524	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	3p26.3	CNTN4	rs17013524-T	0.0578	9E-6		1.833	[NR] unit decrease	Illumina [1216074] (imputed)	N
603	chr3	2428150	2428151	rs1032784	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	3p26.3	NR	rs1032784-G	0.747579	6E-6		0.07	[0.041-0.099] unit increase	NR [9260588] (imputed)	N
603	chr3	2435646	2435647	rs34581681	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p26.3		rs34581681-?	NR	2E-8				NR [~ 8900000] (imputed)	N
603	chr3	2442115	2442116	rs186018483	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	3p26.3	NR	rs186018483-C		2E-6		0.2699	[0.16-0.38] SD units decrease	NR [10700000] (imputed)	N
603	chr3	2461618	2461619	rs72996095	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	3p26.3		rs72996095-?	NR	5E-7		2.18131		NR [NR] (imputed)	N
603	chr3	2485968	2485969	rs9878978	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	3p26.3	CNTN4	rs9878978-?	NR	5E-7	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
604	chr3	2514902	2514903	rs6796313	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	3p26.3		rs6796313-?	NR	8E-9		0.0191	NR unit increase	NR [4425810] (imputed)	N
604	chr3	2515893	2515894	rs11708578	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p26.3	CNTN4	rs11708578-G	NR	1E-10		1.0799136	[1.06-1.1]	Illumina [6627481] (imputed)	N
604	chr3	2515893	2515894	rs11708578	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p26.3	CNTN4	rs11708578-G	NR	7E-11		1.081081	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
604	chr3	2521321	2521322	rs35346733	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	3p26.3	NR	rs35346733-A	0.1879	5E-9		0.08186534	[0.054-0.109] unit increase	NR [NR]	N
604	chr3	2521321	2521322	rs35346733	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	3p26.3	NR	rs35346733-?		5E-10				NR [520857]	N
604	chr3	2521321	2521322	rs35346733	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3p26.3	CNTN4	rs35346733-?		8E-10				NR [6786993] (imputed)	N
604	chr3	2521321	2521322	rs35346733	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p26.3	CNTN4	rs35346733-G	0.8058	4E-10		1.0321046		Affymetrix [11880941] (imputed)	N
604	chr3	2521321	2521322	rs35346733	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3p26.3	CNTN4	rs35346733-?	NR	2E-12		1.075	[1.05-1.1]	Illumina [8000000] (imputed)	N
604	chr3	2523529	2523530	rs79900123	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p26.3	CNTN4	rs79900123-T	0.0229132531102799	2E-6	(G_Acidaminococcus_HB)	0.944528	[0.55-1.34] unit increase	Illumina [7711310] (imputed)	N
604	chr3	2527302	2527303	rs4561819	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p26.3	CNTN4	rs4561819-?	NR	3E-11		0.017707828	[0.013-0.023] unit decrease	NR [7306098]	N
604	chr3	2530141	2530142	rs7636944	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p26.3	NR	rs7636944-?	NR	2E-9				Illumina [7760689] (imputed)	N
604	chr3	2533745	2533746	rs66610175	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs66610175-?	NR	2E-11				NR [2625067]	N
604	chr3	2537915	2537916	rs17194476	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	3p26.3	NR	rs17194476-T	0.1501	4E-11		0.10071302	[0.071-0.131] unit increase	NR [NR]	N
604	chr3	2538279	2538280	rs66492629	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p26.3	CNTN4	rs66492629-A	NR	4E-10	(EA)	1.098901	[1.07-1.13]	Illumina [6627481] (imputed)	N
604	chr3	2538445	2538446	rs34771152	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs34771152-?	NR	1E-8				NR [2625067]	N
604	chr3	2547785	2547786	rs17194490	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3p26.3	NR	rs17194490-?		2E-11				NR [8377093]	N
604	chr3	2547785	2547786	rs17194490	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p26.3	NR	rs17194490-?	NR	2E-11		1.10385	[1.08-1.13]	Affymetrix, Illumina [12447948] (imputed)	N
604	chr3	2547785	2547786	rs17194490	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3p26.3	NR	rs17194490-?	NR	5E-11				Illumina [up to 5582932] (imputed)	N
604	chr3	2547785	2547786	rs17194490	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p26.3	CNTN4	rs17194490-T		5E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [NR]	N
604	chr3	2547785	2547786	rs17194490	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p26.3	NR	rs17194490-T	NR	1E-11		1.1	[NR]	Illumina [7158791] (imputed)	N
604	chr3	2547785	2547786	rs17194490	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3p26.3	CNTN4	rs17194490-T	0.156	3E-11		1.101	[1.070-1.132]	Affymetrix, Illumina [9005918] (imputed)	N
604	chr3	2550092	2550093	rs17786957	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p26.3		rs17786957-C	0.1633	6E-10		0.018	[0.012-0.024] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
604	chr3	2554096	2554097	rs9845120	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p26.3	Intergenic	rs9845120-T	0.7149	5E-12	(MTAG)	0.0126	[0.0091-0.0161] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
604	chr3	2554296	2554297	rs9858503	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p26.3	Intergenic	rs9858503-G	0.7153	7E-10		0.0133	[0.009-0.0176] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
604	chr3	2554611	2554612	rs34877519	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p26.3	Intergenic	rs34877519-T	0.1633	9E-11	(MTAG)	0.0157	[0.011-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
604	chr3	2555793	2555794	rs9864558	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	3p26.3		rs9864558-T	0.05	2E-6		1.05	unit increase	Affymetrix [NR] (imputed)	N
604	chr3	2561555	2561556	rs17620999	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3p26.3	NR	rs17620999-?		5E-10				NR [8377093]	N
604	chr3	2565354	2565355	rs13078307	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	IL5RA	rs13078307-?	NR	6E-6	(quinolinic acid)	0.22891633	[0.13-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
604	chr3	2579506	2579507	rs182265848	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	3p26.3	CNTN4	rs182265848-T	0.014	1E-12	(YKL-40)	58.516	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
604	chr3	2621219	2621220	rs11129200	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p26.3	CNTN4	rs11129200-CTT	NR	2E-6		0.886622	[0.56-1.21] unit decrease	Illumina [> 6200000] (imputed)	N
605	chr3	2624937	2624938	rs2619566	19451621	Landers JE	2009-05-18	Proc Natl Acad Sci U S A	Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	1,821 cases, 2,258 controls	538 cases, 556 controls		CNTN4	rs2619566-G	NR	7E-6	(age of onset)	3.03	[1.71-4.35] years decrease	Illumina [288357]	N
605	chr3	2641296	2641297	rs1479537	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.3	NR	rs1479537-?	NR	7E-6				Affymetrix [NR]	N
605	chr3	2654690	2654691	rs4370013	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Blood pressure	Up to 1,327 individuals	NA	3p26.3	CNTN4	rs4370013-?	NR	4E-6	(DBP)			Affymetrix [70897]	N
605	chr3	2658348	2658349	rs35058156	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	3p26.3	CNTN4	rs35058156-A	0.51	8E-6		0.74	[0.41-1.07] g/day increase	Affymetrix [10353649] (imputed)	N
605	chr3	2693257	2693258	rs6768500	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	3p26.3	CNTN4	rs6768500-C	0.023	1E-6		7.634	[3.379-17.25]	Illumina [7585874] (imputed)	N
605	chr3	2694726	2694727	rs76646538	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	3p26.3	CNTN4	rs76646538-C	0.04	4E-7		3.933	[2.317-6.676]	Illumina [7585874] (imputed)	N
605	chr3	2698870	2698871	rs79350564	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tuberculosis	4,426 European ancestry cases, 84,290 European ancestry controls	NA	3p26.3	NR	rs79350564-?	NR	2E-6		0.2707	[0.16-0.39] unit decrease	Illumina [at least 560000] (imputed)	N
606	chr3	2758162	2758163	rs2063896	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.3	IL5RA	rs2063896-?	NR	1E-7	(CE 20:3)	0.19615844	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
606	chr3	2761814	2761815	rs76218880	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	3p26.3	NR	rs76218880-T	NR	1E-6		5.11	[NR]	Illumina [NR] (imputed)	N
606	chr3	2813258	2813259	rs35615064	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CNTN4	rs35615064-?	NR	2E-8	(female)	3.17296	[NR] unit decrease	Affymetrix [NR] (imputed)	N
606	chr3	2813967	2813968	rs12330913	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.3	NR	rs12330913-A	0.1341	2E-8	(AKR1B1)	0.00993	NR unit increase	Illumina [1671387] (imputed)	N
606	chr3	2821615	2821616	rs7652782	24379826	Voruganti VS	2013-12-16	Front Genet	Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans.	Serum uric acid levels	632 Mexican American individuals	NA	3p26.3	CNTN4	rs7652782-A	0.06	7E-7				Illumina [NR] (imputed)	N
606	chr3	2835237	2835238	rs74844337	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		CNTN4	rs74844337-?	NR	4E-8	(male)	0.631118	[NR] unit increase	Affymetrix [NR] (imputed)	N
606	chr3	2846315	2846316	rs975334	22318345	Cha PC	2012-02-09	J Hum Genet	A genome-wide association study identifies SNP in DCC is associated with gallbladder cancer in the Japanese population.	Gallbladder cancer	41 Japanese ancestry cases, 866 Japanese ancestry controls	30 Japanese ancestry cases, 898 Japanese ancestry controls	3p26.2	NR	rs975334-C	0.16	9E-7		8.3	[3.57-19.26]	Illumina [425706] (imputed)	N
606	chr3	2873172	2873173	rs150343078	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p26.2	CNTN4	rs150343078-T	0.999	3E-7	(AA)	0.44	unit increase	Illumina [NR] (imputed)	N
607	chr3	2895683	2895684	rs11713158	22449649	Loo SK	2012-02-28	J Am Acad Child Adolesc Psychiatry	Genome-wide association study of intelligence: additive effects of novel brain expressed genes.	Intelligence	656 European ancestry individuals from ADHD families	NA		CNTN4	rs11713158-?	NR	9E-7	(High intelligence)	5.04	[3.06-7.02] unit increase	Illumina [795637]	N
607	chr3	2905055	2905056	rs75622279	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	3p26.2		rs75622279-A	NR	3E-7		2.03		Illumina [7574753] (imputed)	N
607	chr3	2907096	2907097	rs10510241	33575800	Mulford AJ	2021-02-11	Hum Mol Genet	Genetically regulated expression underlies cellular sensitivity to chemotherapy in diverse populations.	Cisplatin drug response (IC50)	175 African ancestry individuals	NA	3p26.2	NR	rs10510241-A	NR	5E-9		0.65	unit increase	NR [9542566] (imputed)	N
607	chr3	2938733	2938734	rs17022006	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to aripiprazole in schizophrenia	397 Han Chinese ancestry cases	405 Han Chinese ancestry cases	3p26.2	CNTN4	rs17022006-G	NR	3E-8		7.16	[4.63-9.69] unit decrease	Illumina [6097251] (imputed)	N
607	chr3	2939820	2939821	rs4685577	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.2	IL5RA	rs4685577-?	NR	9E-7	(TAG 54:8)	0.1958965	[0.12-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
607	chr3	2939820	2939821	rs4685577	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.2	IL5RA	rs4685577-?	NR	9E-6	(TAG 54:7)	0.1769378	[0.099-0.255] unit decrease	Affymetrix [at least 2500000] (imputed)	N
607	chr3	2939820	2939821	rs4685577	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.2	IL5RA	rs4685577-?	NR	2E-6	(TAG 58:10)	0.18969521	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
607	chr3	2985141	2985142	rs41526344	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in chronic obstructive pulmonary disease	237 cases	NA	3p26.2	CNTN4	rs41526344-?		4E-8		0.13	[0.083-0.177] unit increase	Affymetrix [418365]	N
608	chr3	3055246	3055247	rs17024684	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p26.2	CNTN4	rs17024684-?	NR	2E-9	(Clustering coefficient - L-isthmus of the cingulate)			Illumina [428287]	N
608	chr3	3086194	3086195	rs163563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p26.2		rs163563-T	NR	4E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
608	chr3	3086194	3086195	rs163563	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p26.2	CNTN4-AS1, CNTN4	rs163563-T	0.9096	5E-13		0.04368935	[0.032-0.056] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3096926	3096927	rs163574	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	3p26.2	NR	rs163574-?	NR	3E-8		0.04888	[0.032-0.066] unit decrease novel	Illumina [6108953] (imputed)	N
608	chr3	3096926	3096927	rs163574	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3p26.2	CNTN4-AS1, CNTN4	rs163574-G	0.9086	5E-9		0.03611994	[0.024-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3096926	3096927	rs163574	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3p26.2	CNTN4-AS1, CNTN4	rs163574-G	0.9086	5E-11		0.0405985	[0.028-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3098040	3098041	rs163352	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CNTN4	5,364 Icelandic ancestry individuals	NA	3p26.2		rs163352-G	0.1937	7E-16		0.193179	[0.15-0.24] unit increase	Illumina [7506463] (imputed)	N
608	chr3	3098040	3098041	rs163352	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	CNTN4	rs163352-C	0.813	3E-24	(Contactin-4, CNTN4.3298.52.2)	0.32	[0.26-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr3	3107729	3107730	rs340827	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,365 Icelandic ancestry individuals	NA	3p26.2		rs340827-A	0.4573	8E-18		0.159387	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
608	chr3	3108082	3108083	rs340828	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,366 Icelandic ancestry individuals	NA	3p26.2		rs340828-A	0.4562	1E-13		0.138527	[0.1-0.17] unit increase	Illumina [7506463] (imputed)	N
608	chr3	3108279	3108280	rs55865625	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p26.2	IL5RA	rs55865625-G	0.068022	1E-9		0.026674625	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
608	chr3	3115477	3115478	rs163897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p26.2	IL5RA	rs163897-C	0.467078	5E-15		0.017314969	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr3	3115477	3115478	rs163897	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p26.2	IL5RA	rs163897-C	0.467084	4E-15		0.017329885	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr3	3118005	3118007	rs3217673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3p26.2	IL5RA	rs3217673-T	0.50515	3E-17		0.019010695	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr3	3118005	3118007	rs3217673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p26.2	IL5RA	rs3217673-T	0.505161	1E-15		0.018037716	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr3	3118005	3118007	rs3217673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3p26.2	IL5RA	rs3217673-T	0.5048	4E-20		0.0326002	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3118005	3118007	rs3217673	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p26.2	IL5RA	rs3217673-T	0.5047	1E-23		0.03525096	[0.028-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3123325	3123326	rs163546	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3p26.2	IL5RA	rs163546-G	0.2882	5E-20		0.03589139	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3130220	3130221	rs334809	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Oleic acid (18:1n-9) levels	8,961 European ancestry individuals		3p26.2	IL5RA	rs334809-A	NR	1E-6		0.3286	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
608	chr3	3130644	3130645	rs3804795	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p26.2	IL5RA	rs3804795-?		1E-6	(AA)			Illumina [NR]	N
608	chr3	3137312	3137313	rs12632952	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	NR	rs12632952-A	0.187	2E-27	(Interleukin-5 receptor subunit alpha, IL5RA.4491.4.2)	0.36	[0.3-0.42] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr3	3137781	3137782	rs9851301	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	IL5RA	rs9851301-A	0.344	7E-18	(Interleukin-5 receptor subunit alpha, IL5RA.13686.2.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
608	chr3	3139956	3139957	rs2290610	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p26.2	IL5RA	rs2290610-C	0.356444	2E-30		0.027985731	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr3	3139956	3139957	rs2290610	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p26.2	IL5RA, SNORA43	rs2290610-C	0.3636821	8E-28	(Interleukin-5 receptor subunit alpha)	0.4887	[0.4-0.57] unit increase	Affymetrix [509946]	N
608	chr3	3141599	3141600	rs6442776	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,365 Icelandic ancestry individuals	NA	3p26.2		rs6442776-T	0.3418	4E-76		0.350836	[0.31-0.39] unit increase	Illumina [7506463] (imputed)	N
608	chr3	3142502	3142503	rs6793191	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	3p26.2		rs6793191-A	0.440242	5E-10		0.0277951	[0.019-0.037] unit decrease	Illumina [13470073] (imputed)	N
608	chr3	3142502	3142503	rs6793191	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	3p26.2	NR	rs6793191-C	0.558477	4E-12		0.033667	[0.024-0.043] SD units increase	Affymetrix, Illumina [16279099] (imputed)	N
608	chr3	3142876	3142880	rs745974379	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p26.2	IL5RA	rs745974379-A	0.300645	3E-15		0.020917205	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
608	chr3	3144518	3144519	rs13097407	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	NR	rs13097407-G	0.077	6E-28	(Interleukin-5 receptor subunit alpha, IL5RA.4491.4.2)	0.52	[0.42-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
608	chr3	3144518	3144519	rs13097407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3p26.2	IL5RA	rs13097407-G	0.0711	2E-10		0.04434132	[0.031-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3144518	3144519	rs13097407	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p26.2	IL5RA	rs13097407-G	0.0711	2E-13		0.05083781	[0.037-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
608	chr3	3144764	3144765	rs6800335	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,366 Icelandic ancestry individuals	NA	3p26.2		rs6800335-T	0.3243	2E-80		0.364791	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
608	chr3	3144764	3144765	rs6800335	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p26.2	IL5RA	rs6800335-C	0.6653125	2E-36	(IL5RA, 13686_2_3)	0.31731862	[0.27-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
608	chr3	3144764	3144765	rs6800335	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p26.2	IL5RA	rs6800335-C	0.6653125	2E-33	(IL5RA, 4491_4_2)	0.30645567	[0.26-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
609	chr3	3147980	3147981	rs17879755	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	3p26.2	NR	rs17879755-C	0.91	2E-6		5.64	[3.37-7.91] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
609	chr3	3148457	3148458	rs334782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3p26.2	IL5RA	rs334782-C	0.4069	6E-13		0.0264543	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3150963	3150964	rs77400868	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,366 Icelandic ancestry individuals	NA	3p26.2		rs77400868-G	0.1443	8E-94		0.521408	[0.47-0.57] unit increase	Illumina [7506463] (imputed)	N
609	chr3	3150963	3150964	rs77400868	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL5RA	5,365 Icelandic ancestry individuals	NA	3p26.2		rs77400868-G	0.1443	5E-104		0.546257	[0.5-0.6] unit increase	Illumina [7506463] (imputed)	N
609	chr3	3150963	3150964	rs77400868	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	IL5RA	rs77400868-G	0.139	7E-45	(Interleukin-5 receptor subunit alpha, IL5RA.4491.4.2)	0.51	[0.43-0.59] unit increase	Affymetrix [10572788] (imputed)	N
609	chr3	3151345	3151346	rs3856850	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p26.2	IL5RA	rs3856850-G	0.2775	2E-9		0.02333249	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3151758	3151759	rs2290608	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p26.2	IL5RA	rs2290608-T	0.256283	7E-17		0.02295995	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr3	3152929	3152930	rs17878498	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p26.2	IL5RA	rs17878498-T	0.247451	6E-44		0.03905994	[0.034-0.045] unit increase	Affymetrix [93095623] (imputed)	N
609	chr3	3153193	3153194	rs6787336	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p26.2		rs6787336-A	NR	3E-27		0.0205	[0.017-0.024] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
609	chr3	3153193	3153194	rs6787336	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p26.2	IL5RA	rs6787336-A	0.2913	3E-13		0.02944077	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3153338	3153339	rs1695315	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3p26.2		rs1695315-G	0.395	2E-21				Affymetrix [10369434] (imputed)	N
609	chr3	3153338	3153339	rs1695315	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p26.2	IL5RA	rs1695315-A	0.604959	5E-59		0.03694302	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr3	3153338	3153339	rs1695315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p26.2	NR	rs1695315-A	0.615218	8E-60				Affymetrix, Illumina [19872809] (imputed)	N
609	chr3	3153338	3153339	rs1695315	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p26.2	NR	rs1695315-A	0.605423	2E-61		0.03387	[0.03-0.038] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
609	chr3	3153338	3153339	rs1695315	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p26.2		rs1695315-?	NR	8E-47				NR [~ 8900000] (imputed)	N
609	chr3	3153338	3153339	rs1695315	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p26.2	IL5RA	rs1695315-A	0.6055	3E-14		0.02797388	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3153338	3153339	rs1695315	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p26.2	IL5RA	rs1695315-A	0.6056	5E-12		0.02548749	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3153338	3153339	rs1695315	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p26.2	IL5RA	rs1695315-A	0.6055	2E-16		0.03026724	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3160213	3160214	rs10212483	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p26.2	IL5RA	rs10212483-A	0.0426	3E-10		0.05523778	[0.038-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3160278	3160279	rs114487517	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Small vessel stroke	333 Indian ancestry cases, 2,154 Indian ancestry controls	NA	3p26.2		rs114487517-T	NR	3E-8		1.2264684	[1.14111741531117-1.31820340693157]	Illumina [7827597] (imputed)	N
609	chr3	3160964	3160965	rs66467177	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p26.2		rs66467177-?	NR	2E-8				Affymetrix [NR] (imputed)	N
609	chr3	3187670	3187671	rs11297247	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p26.2	NR	rs11297247-T	0.8448	3E-7		0.0691	[0.043-0.096] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
609	chr3	3190654	3190654	rs6147688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	3p26.2		rs6147688-TAAAGATTTATTCTCTAAAG	0.716156	1E-24		0.0544303	[0.044-0.065] unit increase	Illumina [13469940] (imputed)	N
609	chr3	3190654	3190654	rs6147688	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p26.2	TRNT1	rs6147688-TAAAGATTTATTCTCTAAAG	0.120646	5E-11		0.023390418	[0.016-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr3	3193186	3193186	rs3840225	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	16,201 African American or Afro-Caribbean individuals	NA	3p26.2		rs3840225-A	0.5731	3E-77		0.0827	[0.051-0.114] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
609	chr3	3198379	3198380	rs1669340	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	3p26.2		rs1669340-T	0.3184	4E-8		0.0699	[0.045-0.095] unit increase	Affymetrix, Illumina [NR] (imputed)	N
609	chr3	3198379	3198380	rs1669340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3p26.2	CRBN	rs1669340-T	0.838584	2E-17		0.025684288	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr3	3198379	3198380	rs1669340	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p26.2	CRBN	rs1669340-T	0.838571	7E-17		0.02516394	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr3	3198379	3198380	rs1669340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p26.2	NR	rs1669340-T	0.745855	1E-59				Affymetrix, Illumina [19905671] (imputed)	N
609	chr3	3198379	3198380	rs1669340	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (basophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3p26.2	CRBN1	rs1669340-G	0.316	7E-7		0.081	[0.05-0.112] unit increase	Illumina [27887661] (imputed)	N
609	chr3	3199634	3199635	rs1669338	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	3p26.2	CRBN	rs1669338-?	0.17	6E-6				Illumina [565404]	N
609	chr3	3203503	3203504	rs17027750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p26.2	CRBN	rs17027750-G	0.1596	1E-28		0.0527062	[0.043-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3203503	3203504	rs17027750	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3p26.2	CRBN	rs17027750-G	0.1594	3E-25		0.04974985	[0.04-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
609	chr3	3205141	3205142	rs3804785	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	3p26.2		rs3804785-G	NR	1E-23		0.0522	[0.042-0.062] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
609	chr3	3205141	3205142	rs3804785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	3p26.2	NR	rs3804785-T	0.252801	9E-27		0.062012	[0.051-0.073] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
609	chr3	3205141	3205142	rs3804785	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	3p26.2	CRBN	rs3804785-?	NR	3E-20		0.06167	[0.049-0.075] unit increase novel	Illumina [6108953] (imputed)	N
609	chr3	3231837	3231838	rs1672743	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p26.2	NR	rs1672743-T	0.053157	6E-6	(IGP16)	1.1657	[0.66-1.67] unit increase	Illumina [~ 2500000] (imputed)	N
609	chr3	3260437	3260438	rs2874666	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3p26.2	CRBN	rs2874666-?		9E-7	(additive)	0.114	[0.069-0.159] unit increase	Illumina [1492601] (imputed)	N
609	chr3	3260437	3260438	rs2874666	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3p26.2	CRBN	rs2874666-?		5E-7	(recessive)	0.171	[0.1-0.24] unit increase	Illumina [1492601] (imputed)	N
609	chr3	3270367	3270368	rs13083522	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	3p26.2	NR	rs13083522-G	0.78	5E-8		0.31	[0.19-0.43] unit increase	Affymetrix [9231066] (imputed)	N
609	chr3	3270367	3270368	rs13083522	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	3p26.2	NR	rs13083522-G	0.78	5E-8		0.31	[0.19-0.43] unit increase	Affymetrix [9231066] (imputed)	N
610	chr3	3277528	3277529	rs28740860	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to phenytoin in focal epilepsy	71 European ancestry cases, 218 European ancestry controls	NA			rs28740860-?	NR	9E-7				Illumina [NR] (imputed)	N
610	chr3	3355543	3355544	rs770996	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	3p26.2	intergenic	rs770996-T	NR	3E-6		1.31	[1.17-1.47]	NR [7738399] (imputed)	N
610	chr3	3356173	3356174	rs9874556	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	3p26.2	intergenic	rs9874556-A	NR	4E-6		1.31	[1.17-1.47]	NR [7738399] (imputed)	N
610	chr3	3356173	3356174	rs9874556	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	3p26.2	NR	rs9874556-A	0.47	9E-6		1.3	[1.18-1.42]	Illumina [4058415] (imputed)	N
610	chr3	3356173	3356174	rs9874556	23180869	Wu C	2012-11-24	Gut	Genome-wide association study of survival in patients with pancreatic adenocarcinoma.	Pancreatic cancer	642 European ancestry cases	363 Chinese ancestry cases	3p26.2	intergenic	rs9874556-A	0.46	4E-6		1.31	[1.17-1.46]	Illumina [2731086] (imputed)	N
610	chr3	3361325	3361326	rs115986078	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.2	NR	rs115986078-T	0.01394	1E-10	(DPP7)	0.1639	NR unit increase	Illumina [1671387] (imputed)	N
610	chr3	3375783	3375784	rs9835812	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p26.2	CRBN	rs9835812-?		8E-7	(Hispanic)			Illumina [NR]	N
611	chr3	3412170	3412171	rs191337885	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	3p26.2	NR	rs191337885-?	NR	6E-6		1.3123	[0.83-1.8] unit increase	Illumina [at least 560000] (imputed)	N
611	chr3	3448143	3448144	rs1848460	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	3p26.2	NR	rs1848460-T	0.26	3E-15		1.09	[1.07-1.11]	Affymetrix, Illumina [15838848] (imputed)	N
611	chr3	3448143	3448144	rs1848460	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	3p26.2	CNTN4, CRBN, LRRN1	rs1848460-T	0.26	2E-13		1.07	[1.05-1.10]	Affymetrix, Illumina [6864281] (imputed)	N
611	chr3	3473239	3473240	rs1508750	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.2	NR	rs1508750-?	NR	2E-9				Affymetrix [NR]	N
611	chr3	3491914	3491915	rs115863965	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p26.2	NR	rs115863965-?	NR	6E-9		5.824	NR z score increase	Illumina [at least 830937] (imputed)	N
611	chr3	3503859	3503860	rs974515	27696742	Yau MS	2016-10-01	Arthritis Rheumatol	Genome-Wide Association Study of Radiographic Knee Osteoarthritis in North American Caucasians.	Knee osteoarthritis	2,672 European ancestry cases, 1,776 European ancestry controls	1,226 European ancestry cases, 1,392 European ancestry controls	3p26.2	CRBN, LRRN1	rs974515-?	NR	8E-6	(Adjusted for knee trauma)	1.2	[1.11-1.32]	Illumina [at least 8248570] (imputed)	N
611	chr3	3527507	3527508	rs192000835	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC034195.1	rs192000835-?	NR	2E-9		2.52331	[NR] unit decrease	Affymetrix [NR] (imputed)	N
612	chr3	3565526	3565527	rs9845942	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Eating disorder in bipolar disorder	184 European ancestry cases, 2,006 European ancestry controls	NA	3p26.2	NR	rs9845942-T	0.27	5E-6		1.68	[NR]	Affymetrix [703012]	N
612	chr3	3588041	3588042	rs17684824	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3p26.2	CRBN	rs17684824-?		4E-6				Illumina [859311]	N
612	chr3	3612597	3612598	rs9879901	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	3p26.2	NR	rs9879901-?		4E-6		1.88	[1.44-2.47]	Illumina [539473] (imputed)	N
612	chr3	3614886	3614887	rs9815663	22560479	Forno E	2012-05-02	J Allergy Clin Immunol	Genome-wide association study of the age of onset of childhood asthma.	Asthma (childhood onset)	573 European ancestry children	107 European ancestry children, 591 Hispanic children, 233 children	3p26.2	IL5RA	rs9815663-T	0.1820	2E-8		0.17	[NR] unit decrease	Illumina [512296]	N
612	chr3	3628980	3628981	rs10865864	23874384	Viding E	2013-07-09	PLoS One	Genetics of callous-unemotional behavior in children.	Callous-unemotional behaviour	2,930 European ancestry children	NA	3p26.2	LRRN1	rs10865864-G	0.197	4E-6				Affymetrix [1724317] (imputed)	N
612	chr3	3649849	3649850	rs9842137	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p26.2	NR	rs9842137-C	0.9969	9E-9		0.4254	[0.28-0.57] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
612	chr3	3650238	3650239	rs9837561	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3p26.2	intergenic	rs9837561-?	NR	3E-6	(SF9)			Affymetrix [5476100] (imputed)	N
612	chr3	3658839	3658840	rs1601875	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	3p26.2	intergenic	rs1601875-?	NR	7E-6				Affymetrix [1769948] (imputed)	N
612	chr3	3658839	3658840	rs1601875	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p26.2	NR	rs1601875-?	0.50	7E-6		1.14	[NR]	Affymetrix [1769948] (imputed)	N
613	chr3	3679851	3679852	rs17034687	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	3p26.2	intergenic	rs17034687-C	0.09	2E-9		0.23	[0.16-0.30] unit increase	Affymetrix, Illumina [2552511] (imputed)	N
613	chr3	3687690	3687691	rs1873027	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	3p26.2	LRRN1	rs1873027-?	NR	8E-9	(EA)	0.003713	[0.0016-0.0059] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
613	chr3	3726155	3726156	rs9809849	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p26.2		rs9809849-G	0.578	2E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
613	chr3	3726155	3726156	rs9809849	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p26.2	LRRN1	rs9809849-G	0.574662	2E-11		0.014025	[0.0099-0.0181] unit increase	NR [16516521] (imputed)	N
613	chr3	3727588	3727589	rs1485272	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p26.2	NR	rs1485272-C	0.346	7E-9		0.00657202	[0.0043-0.0088] unit decrease	NR [9732723] (imputed)	N
613	chr3	3753469	3753470	rs769789	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p26.2	Intergenic	rs769789-T	0.8118	3E-10	(MTAG)	0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
613	chr3	3753469	3753470	rs769789	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p26.2	Intergenic	rs769789-C	0.1882	3E-8		0.0138	[0.0089-0.0187] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
613	chr3	3753469	3753470	rs769789	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p26.2	Intergenic	rs769789-T	0.8114	4E-11	(MTAG)	0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
613	chr3	3753469	3753470	rs769789	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p26.2	Intergenic	rs769789-T	0.8113	6E-9	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
614	chr3	3807591	3807592	rs6801789	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p26.2	LRRN1	rs6801789-C	0.354	2E-22	(Leucine-rich repeat neuronal protein 1, LRRN1.11586.2.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
614	chr3	3831832	3831833	rs201109606	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	3p26.2		rs201109606-A	NR	3E-8		0.65	[0.56-0.76]	Illumina [7105229] (imputed)	N
614	chr3	3840867	3840868	rs9827335	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	3p26.2	NR	rs9827335-?	NR	4E-7		0.4227	[0.25-0.59] unit increase	Illumina [at least 560000] (imputed)	N
614	chr3	3877061	3877062	rs767244068	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	3p26.2	LRRN1, SUMF1	rs767244068-A	0.9987	8E-6		1.0176	[0.57-1.46] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
614	chr3	3879400	3879401	rs6807234	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p26.2	LRRN1	rs6807234-A	0.1912	1E-8		0.014121367	[0.0093-0.019] unit increase	Illumina [9339358] (imputed)	N
614	chr3	3891305	3891306	rs66515854	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	3p26.2	NR	rs66515854-C		7E-6		0.1948	[0.11-0.28] SD units increase	NR [10700000] (imputed)	N
614	chr3	3895395	3895396	rs139959052	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	3p26.2	SUMF1	rs139959052-T	0.0288	2E-6		1.73	[1.42-2.07]	Illumina [64973696] (imputed)	N
614	chr3	3925008	3925009	rs35362348	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p26.2	NR	rs35362348-?	NR	3E-6	(female)	0.3398	[0.2-0.48] unit decrease	Illumina [11133794] (imputed)	N
614	chr3	3930525	3930526	rs139172940	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p26.2	NR	rs139172940-?	NR	1E-7	(female)	0.3975	[0.25-0.55] unit decrease	Illumina [11133794] (imputed)	N
615	chr3	3936631	3936632	rs7641347	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p26.2	NR	rs7641347-T	0.03	2E-8	(female)	0.4194	[0.27-0.56] unit increase	Illumina [11133794] (imputed)	N
615	chr3	3941668	3941668	rs149757663	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p26.2	NR	rs149757663-?	NR	4E-8	(female)	0.4271	[0.28-0.58] unit decrease	Illumina [11133794] (imputed)	N
615	chr3	3960461	3960462	rs9831663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p26.2	Intergenic	rs9831663-A	0.3609	3E-8	(MTAG)	0.0104	[0.0067-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
615	chr3	3960461	3960462	rs9831663	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p26.2	Intergenic	rs9831663-A	0.3607	7E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
615	chr3	4023052	4023053	rs9827298	32742401	Parviainen R	2020-06-12	Exp Ther Med	A single genetic locus associated with pediatric fractures: A genome-wide association study on 3,230 patients.	Fractures (paediatric)	48 European ancestry cases, 3,182 European ancestry controls	NA	3p26.2	LRRN1, SETMAR, SUMF1	rs9827298-G	0.0635	1E-7		2.325	[1.47-3.18] unit increase	Illumina [3515000] (imputed)	N
615	chr3	4060872	4060873	rs79700091	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p26.1	NR	rs79700091-?	NR	3E-7	(female)	0.3998	[0.25-0.55] unit increase	Illumina [11133794] (imputed)	N
616	chr3	4075353	4075354	rs78897411	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Aspartate aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	3p26.1	intergenic	rs78897411-A	0.033054	7E-6		0.512307	[0.29-0.74] unit increase	NR [7263501] (imputed)	N
616	chr3	4103374	4103375	rs56399798	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p26.1	NR	rs56399798-A	0.185	4E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
616	chr3	4103925	4103926	rs795727	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p26.1	NR	rs795727-G	0.485	2E-6	(IFNalpha_CXCL10_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
616	chr3	4121377	4121378	rs17039793	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	LRRN1	rs17039793-?	NR	4E-6	(sorbitol)	2.4150116	[1.39-3.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
616	chr3	4148057	4148058	rs2600151	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to sodium channel-Active anticonvulsant in focal epilepsy	910 European ancestry cases, 1,286 European ancestry controls	NA			rs2600151-?	NR	3E-6				Illumina [NR] (imputed)	N
616	chr3	4181810	4181811	rs75107653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	3p26.1	SETMAR, SUMF1	rs75107653-?		9E-8	(PCB196/203)	0.57	[0.35-0.79] unit increase	Affymetrix [629686]	N
616	chr3	4181810	4181811	rs75107653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	3p26.1	SETMAR, SUMF1	rs75107653-?		9E-8	(PCB196/203)	0.57	[0.35-0.79] unit increase	Affymetrix [629686]	N
616	chr3	4181810	4181811	rs75107653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	3p26.1	SETMAR, SUMF1	rs75107653-?		2E-7	(PCB199)	0.56	[0.32-0.8] unit increase	Affymetrix [629686]	N
616	chr3	4181810	4181811	rs75107653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	3p26.1	SETMAR, SUMF1	rs75107653-?		1E-7	(PCB194)	0.57	[0.35-0.79] unit increase	Affymetrix [629686]	N
616	chr3	4181810	4181811	rs75107653	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PCBs	329 Hispanic mothers, 273 European ancestry mothers, 122 Asian ancestry mothers, 23 South Asian ancestry mothers, 21 African American mothers, 22 other ancestry mothers	NA	3p26.1	SETMAR, SUMF1	rs75107653-?		1E-7	(PCB194)	0.57	[0.35-0.79] unit increase	Affymetrix [629686]	N
617	chr3	4204454	4204455	rs795288	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p26.1	LRRN1, SETMAR	rs795288-?		3E-16				Affymetrix, Illumina [NR] (imputed)	N
617	chr3	4210613	4210614	rs931302	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3p26.1	NONE, SETMAR	rs931302-T	0.3094	9E-9		5.746	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
617	chr3	4223615	4223616	rs2587949	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p26.1	SETMAR	rs2587949-G	0.44	8E-6	(Age 20-81 years)	0.1432	[0.081-0.206] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
617	chr3	4261273	4261274	rs313682	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3p26.1	NR	rs313682-?	NR	5E-6		0.0936452	[0.053-0.134] unit increase	NR [13958389] (imputed)	N
618	chr3	4346780	4346781	rs314440	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	3p26.1	SUMF1, SETMAR	rs314440-T	NR	5E-6		0.975	[0.965- 0.986]	Illumina [6740241] (imputed)	N
618	chr3	4393016	4393017	rs73020214	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	3p26.1	SUMF1	rs73020214-G	0.9447325	3E-6		0.908872	[0.53-1.29] unit decrease	Illumina [6969139] (imputed)	N
618	chr3	4398989	4398990	rs73022010	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p26.1		rs73022010-G	0.28	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
618	chr3	4413906	4413907	rs145719477	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SUMF1	rs145719477-?	NR	3E-10	(male)	2.62674	[NR] unit decrease	Affymetrix [NR] (imputed)	N
618	chr3	4429631	4429632	rs9990134	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p26.1		rs9990134-C	0.19446	7E-7		0.041936	[0.025-0.059] unit increase	Affymetrix [15580782] (imputed)	N
618	chr3	4429631	4429632	rs9990134	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p26.1		rs9990134-C	0.19446	1E-8		0.049287	[0.032-0.066] unit increase	Affymetrix [15580782] (imputed)	N
618	chr3	4434300	4434301	rs6805181	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SUMF1	rs6805181-?	NR	3E-13		1.96481	[NR] unit decrease	Affymetrix [NR] (imputed)	N
618	chr3	4437357	4437358	rs794185	20802204	Baranzini SE	2010-09-01	Brain	Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis.	Multiple sclerosis--Brain Glutamate Levels	382 cases	NA	3p26.1	SUMF1	rs794185-?	NR	6E-7				Illumina [~ 500000]	N
619	chr3	4458250	4458251	rs698210	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.1	NR	rs698210-?	NR	7E-6				Affymetrix [NR]	N
619	chr3	4479913	4479914	rs17516078	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	ITPR1	rs17516078-?	NR	1E-6	(glycerol)	0.20500174	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
619	chr3	4510193	4510193	rs775903554	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p26.1		rs775903554-?	NR	3E-10		0.0146054	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
619	chr3	4515446	4515447	rs2819574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p26.1		rs2819574-?	NR	4E-9				NR [~ 8900000] (imputed)	N
619	chr3	4529874	4529875	rs304081	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p26.1		rs304081-T	0.3692	2E-7		0.036822	[0.023-0.051] unit decrease	Affymetrix [15580782] (imputed)	N
619	chr3	4541917	4541918	rs529070024	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p26.1	ITPR1	rs529070024-T	0.0021	3E-6		1.9161	[1.11-2.72] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
619	chr3	4545823	4545824	rs304029	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	3p26.1	ITPR1	rs304029-G	0.28	1E-6	(AA, additive )	1.26	[1.15-1.38]	Affymetrix [NR]	N
619	chr3	4563696	4563696	rs775824285	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p26.1		rs775824285-C	0.13324	9E-8		0.052838	[0.034-0.072] unit decrease	Affymetrix [15580782] (imputed)	N
619	chr3	4566032	4566033	rs304023	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p26.1		rs304023-?	NR	2E-14				NR [~ 8900000] (imputed)	N
619	chr3	4584592	4584593	rs304004	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p26.1	NR	rs304004-T	0.104	5E-6	(IFNGR1_of_monocytes)			Illumina [5084123] (imputed)	N
620	chr3	4628540	4628541	rs4685771	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	3p26.1	ITPR1	rs4685771-?	NR	3E-10		0.03355	[0.023-0.044] unit increase novel	Illumina [6108953] (imputed)	N
620	chr3	4629788	4629789	rs35154162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3p26.1		rs35154162-T	NR	7E-19		0.0222	[0.017-0.027] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
620	chr3	4629788	4629789	rs35154162	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3p26.1	NR	rs35154162-T	0.7695	2E-14		0.00191	[0.0014-0.0024] unit decrease	Affymetrix [NR] (imputed)	N
620	chr3	4633491	4633492	rs2322734	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3p26.1	ITPR1	rs2322734-?	0.04	8E-6	(FEV1 65%)	1.4493	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
620	chr3	4637382	4637383	rs78656895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	3p26.1		rs78656895-T	0.407696	1E-11		0.0326502	[0.023-0.042] unit increase	Illumina [13468899] (imputed)	N
620	chr3	4656019	4656020	rs77951172	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ITPR1	rs77951172-?	NR	2E-12		1.71913	[NR] unit decrease	Affymetrix [NR] (imputed)	N
620	chr3	4656037	4656038	rs72622154	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p26.1	NR	rs72622154-?	NR	3E-6	(EA)	0.3942	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
620	chr3	4662823	4662824	rs115054628	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Western dietary pattern	141 individuals	NA	3p26.1	ITPR1	rs115054628-?	NR	5E-6				Illumina [2668805]	N
620	chr3	4703936	4703937	rs7632000	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p26.1	ITPR1	rs7632000-A	0.105	7E-7	(IL6 )	0.03	[NR] pg/mL increase	Illumina [899892]	N
620	chr3	4716213	4716214	rs3804984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	3p26.1		rs3804984-C	NR	2E-11		0.0618	[0.044-0.08] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
621	chr3	4719235	4719236	rs4684433	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p26.1		rs4684433-C	0.31672	4E-6		0.033743	[0.019-0.048] unit increase	Affymetrix [15580782] (imputed)	N
621	chr3	4719235	4719236	rs4684433	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	3p26.1	ITPR1	rs4684433-T	0.62773	3E-8		1.0752687	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
621	chr3	4728573	4728574	rs6787391	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p26.1	NR	rs6787391-T	0.3807	9E-19	(EA)	0.0567	[0.044-0.069] unit increase	Illumina [~ 11800000] (imputed)	N
621	chr3	4733268	4733269	rs6786081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p26.1		rs6786081-?	NR	2E-9				NR [~ 8900000] (imputed)	N
621	chr3	4742275	4742276	rs6762644	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p26.1		rs6762644-A	NR	1E-18		0.95	[0.94-0.96]	Affymetrix, Illumina [NR] (imputed)	N
621	chr3	4742275	4742276	rs6762644	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p26.1	EGOT/ITPR1	rs6762644-G	0.38	4E-18	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
621	chr3	4742275	4742276	rs6762644	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	3p26.1	NR	rs6762644-G	0.4	6E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 14000000] (imputed)	N
621	chr3	4742275	4742276	rs6762644	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	3p26.1	NR	rs6762644-G	0.4	9E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 11600000] (imputed)	N
621	chr3	4742275	4742276	rs6762644	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p26.1	ITPR1, EGOT	rs6762644-G	0.4	2E-12		1.07	[1.04-1.09]	Affymetrix, Illumina [~ 2600000] (imputed)	N
621	chr3	4747359	4747360	rs13313995	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p26.1	NR	rs13313995-A	0.406587	1E-10		0.0202512	[0.014-0.026] unit increase	NR [19129689] (imputed)	N
621	chr3	4751039	4751040	rs72997390	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p26.1		rs72997390-?	NR	2E-9				NR [~ 8900000] (imputed)	N
621	chr3	4753711	4753712	rs2306881	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3p26.1		rs2306881-G	NR	2E-9		0.0138	[0.0093-0.0183] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
621	chr3	4757858	4757859	rs79230762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3p26.1		rs79230762-G	NR	4E-10		0.0752	[0.052-0.099] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
621	chr3	4758243	4758244	rs7645905	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3p26.1	EGOT	rs7645905-T	0.509932	2E-33		0.0060969	[0.0051-0.0071] unit increase	Affymetrix [13995440] (imputed)	N
621	chr3	4758585	4758586	rs901850	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p26.1	ITPR1	rs901850-T	0.256	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
621	chr3	4762733	4762734	rs7639927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p26.1		rs7639927-T	NR	2E-8		0.0121	[0.0078-0.0164] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
621	chr3	4762733	4762734	rs7639927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p26.1	NR	rs7639927-T	0.525456	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
621	chr3	4762843	4762844	rs75898076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p26.1		rs75898076-A	NR	4E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
621	chr3	4762843	4762844	rs75898076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p26.1		rs75898076-A	NR	6E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
621	chr3	4762843	4762844	rs75898076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p26.1	ITPR1	rs75898076-A	0.143122	1E-9		0.019497888	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
621	chr3	4762843	4762844	rs75898076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p26.1	NR	rs75898076-A	0.143037	1E-10		0.018153	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
621	chr3	4762843	4762844	rs75898076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p26.1	NR	rs75898076-A	0.14305	5E-12		0.019432	[0.014-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
621	chr3	4762843	4762844	rs75898076	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p26.1	NR	rs75898076-G	0.85624	3E-12		0.0196971	[0.014-0.025] unit decrease	NR [NR]	N
621	chr3	4763300	4763301	rs9812100	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p26.1	ITPR1	rs9812100-G	0.520058	2E-10		0.0126367	[0.0087-0.0165] unit increase	Affymetrix [NR] (imputed)	N
621	chr3	4763300	4763301	rs9812100	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3p26.1	ITPR1	rs9812100-?	NR	2E-8		0.0148	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
621	chr3	4772691	4772692	rs4685806	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	3p26.1	NR	rs4685806-?	NR	3E-8			[NR]	NR [1665663]	N
621	chr3	4776093	4776094	rs6792995	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p26.1	NR	rs6792995-T	NR	2E-19		0.0291	[0.023-0.035] unit increase	Affymetrix [9000000] (imputed)	N
621	chr3	4793005	4793006	rs17041333	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p26.1	NR	rs17041333-?	NR	3E-8	(EA)	0.8959	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
621	chr3	4830912	4830913	rs11721322	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p26.1		rs11721322-?	NR	4E-8				NR [NR]	N
621	chr3	4838715	4838716	rs6802582	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	3p26.1	NR	rs6802582-T	0.9749	8E-6		0.4696	[0.26-0.68] unit decrease	Illumina [NR] (imputed)	N
622	chr3	4857779	4857780	rs6798160	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	3p26.1	ITPR1	rs6798160-?	NR	6E-6	(Female, Pre-puberty)	0.096	[0.054-0.137] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
622	chr3	4891204	4891205	rs4560284	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p26.1	ITPR1	rs4560284-A	NR	6E-8		1.1138	NR	Affymetrix, Illumina [8278136] (imputed)	N
622	chr3	4909439	4909440	rs2053500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p26.1		rs2053500-C	NR	1E-23		0.0254	[0.02-0.03] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
622	chr3	4909439	4909440	rs2053500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	3p26.1		rs2053500-C	0.510334	3E-17		0.0305943	[0.023-0.038] unit increase	Illumina [13476165] (imputed)	N
622	chr3	4909439	4909440	rs2053500	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3p26.1	ITPR1, BHLHE40-AS1	rs2053500-?		1E-14		0.0352	[0.026-0.044] unit increase	Illumina [31500000] (imputed)	N
622	chr3	4909439	4909440	rs2053500	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	3p26.1	ITPR1, BHLHE40-AS1	rs2053500-?	NR	3E-15		0.03507	[0.026-0.044] unit increase novel	Illumina [6108953] (imputed)	N
622	chr3	4918748	4918749	rs80062757	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	3p26.1	BHLHE40, ITPR1, EGOT	rs80062757-T	0.013	4E-7		0.31	[0.19-0.43] unit decrease	Illumina [10000000] (imputed)	N
623	chr3	5013875	5013876	rs6442925	21979947	Li X	2011-10-06	Hum Mol Genet	A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries.	Corneal structure	222 European ancestry cases, 3,324 European ancestry controls	304 European ancestry cases, 518 European ancestry controls, 146 European ancestry cases and 161 European ancestry controls from 70 families	3p26.1	BHLHB2	rs6442925-?	NR	2E-6		1.56		Illumina [~ 290000]	N
623	chr3	5015893	5015894	rs7428218	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3p26.1	NR	rs7428218-C	0.137	6E-10		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
623	chr3	5020462	5020463	rs12489120	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	3p26.1	BHLHE40	rs12489120-C	NR	3E-7		1.3	NR	Illumina [up to 11532644] (imputed)	N
623	chr3	5022960	5022961	rs13076468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3p26.1		rs13076468-C	NR	1E-10		0.0655	[0.046-0.085] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
623	chr3	5022960	5022961	rs13076468	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3p26.1	BHLHE40	rs13076468-C	0.228471	4E-10		0.06769717	[0.046-0.089] unit increase	Affymetrix [7288503] (imputed)	N
623	chr3	5022960	5022961	rs13076468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3p26.1		rs13076468-?	NR	3E-9				NR [~ 8900000] (imputed)	N
623	chr3	5026007	5026008	rs11130215	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	3p26.1		rs11130215-G	NR	2E-8		0.1043	[0.068-0.141] unit decrease	Affymetrix, Illumina [25843389] (imputed)	N
623	chr3	5034813	5034814	rs78745845	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p26.1	NR	rs78745845-?	NR	3E-6	(EA)	1.0382	[0.61-1.47] unit decrease	Illumina [up to 11892802] (imputed)	N
623	chr3	5043906	5043907	rs13101170	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	ARL8B	rs13101170-?	NR	3E-6	(beta aminoisobutyric acid)	0.21512079	[0.12-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
623	chr3	5055642	5055643	rs12497013	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3p26.1	BHLHE40, ARL8B	rs12497013-A	0.83	3E-8		5.56	z-score increase	Affymetrix [4311822] (imputed)	N
623	chr3	5069429	5069430	rs11715919	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p26.1	NR	rs11715919-C	0.324301	2E-9		0.0200352	[0.014-0.027] unit increase	NR [19129689] (imputed)	N
623	chr3	5083636	5083637	rs74897566	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	3p26.1	BHLHE40	rs74897566-C	0.0196	6E-6		10.88	[NR] unit increase	Illumina [4827900] (imputed)	N
623	chr3	5100290	5100291	rs17734825	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3p26.1	NR	rs17734825-A	0.312	2E-6	(Bray-Curtis metric)	4.649354	NR z-score increase	Illumina [5293637] (imputed)	N
623	chr3	5101786	5101787	rs9821656	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	3p26.1		rs9821656-T	NR	3E-6		52.005	[30.54-73.47] unit increase	Illumina [NR] (imputed)	N
624	chr3	5123443	5123444	rs115218878	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		UBTFL8	rs115218878-?	NR	4E-10	(female)	0.577364	[NR] unit increase	Affymetrix [NR] (imputed)	N
624	chr3	5135570	5135571	rs3864055	30552108	Kawabata Y	2018-12-14	Diabetes	A genome-Wide Association Study Confirming a Strong Effect of HLA and Identifying Variants in CSAD/lnc-ITGB7-1 on Chromosome 12q13.13 Associated with Susceptibility to Fulminant Type 1 Diabetes.	Fulminant type 1 diabetes	257 Japanese ancestry cases, 419 Japanese ancestry controls	NA	3p26.1	ARL8B	rs3864055-T	NR	6E-6		1.79	[1.39-2.31]	Affymetrix [426851] (imputed)	N
624	chr3	5188245	5188246	rs11918654	22993228	Williams FM	2012-09-19	Ann Rheum Dis	Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.	Disc degeneration (lumbar)	4,683 European ancestry individuals	NA	3p26.1	ARL8B	rs11918654-C	0.27	7E-6		0.11	[0.063-0.157] unit decrease	Affymetrix, Illumina [2552511] (imputed)	N
625	chr3	5257970	5257971	rs7646106	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p26.1	EDEM1	rs7646106-C	0.825685	1E-11		0.00210192	[0.0015-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
625	chr3	5257970	5257971	rs7646106	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3p26.1	NR	rs7646106-T	NR	2E-10		0.0201	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
625	chr3	5302076	5302077	rs168193	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	3p26.1	EDEM1	rs168193-?		9E-7	(model 1)	0.79	[0.72-0.87]	Illumina [29610185] (imputed)	N
625	chr3	5309555	5309556	rs9879988	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	ARL8B	rs9879988-?	NR	3E-7	(carnitine)	0.23913525	[0.15-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
625	chr3	5348594	5348595	rs55768811	28836065	Hellwege JN	2017-08-23	Hum Genet	A multi-stage genome-wide association study of uterine fibroids in African Americans.	Uterine fibroids	3,999 African American cases, 4,764 African American controls	NA	3p26.1	EDEM1	rs55768811-T	0.09	3E-7		1.3157895	[1.15-1.52]	Affymetrix, Illumina [17963051] (imputed)	N
627	chr3	5528089	5528090	rs72996648	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p26.1	NR	rs72996648-A	0.053	8E-6		0.340038	[0.19-0.49] unit decrease	Illumina [~ 6600000] (imputed)	N
627	chr3	5535276	5535277	rs4685943	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 12, vertical position of sublabial sulcus relative to central midface)	2,187 European ancestry individuals	NA	3p26.1	NR	rs4685943-T	0.00917	1E-6		0.7797	[0.47-1.09] unit increase	Illumina [10677593] (imputed)	N
627	chr3	5535276	5535277	rs4685943	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lip morphology	2,447 European ancestry individuals	671 European ancestry individuals	3p26.1	Intergenic	rs4685943-T	0.009671	2E-7	(Lower lip height)	1.491	[0.93-2.05] unit increase	Illumina [34985077] (imputed)	N
627	chr3	5540617	5540618	rs6800190	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	3p26.1	MIR4790	rs6800190-?	NR	2E-11		0.009755	[0.0051-0.0144] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
627	chr3	5547448	5547449	rs112407915	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	End-stage kidney disease	584 African American cases, 282 Hispanic cases, 112 East Asian cases, 96 Native Hawaiian cases, 1 American Indian cases, 30 cases, 8,429 African American controls, 15,852 Hispanic controls, 3,536 East Asian controls, 2,892 Native Hawaiian controls, 49 American Indian controls, 936 controls	NA	3p26.1	MIR4790	rs112407915-A	0.02	9E-8		1.96	[1.53-2.51]	Illumina [1438399] (imputed)	N
627	chr3	5565701	5565702	rs72998656	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Dementia with Lewy bodies	195 European ancestry cases, 714 European ancestry controls	369 individuals	3p26.1		rs72998656-G	0.96	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
628	chr3	5687263	5687264	rs4685959	28696415	Maciukiewicz M	2017-07-11	Pharmacogenomics J	Genome-wide association studies of placebo and duloxetine response in major depressive disorder.	Duloxetine response in major depressive disorder (% change in symptom score)	186 European ancestry individuals	NA	3p26.1	MIR4790	rs4685959-?		1E-6		1.1	[NR] unit decrease	Illumina [1924595] (imputed)	N
628	chr3	5705051	5705052	rs11710433	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	3p26.1	intergenic	rs11710433-?	NR	1E-6		1.23	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
628	chr3	5714656	5714657	rs76460014	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p26.1	Intergenic	rs76460014-?		9E-6		1.08	[1.04-1.12]	Illumina [7645193] (imputed)	N
628	chr3	5714656	5714657	rs76460014	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p26.1	Intergenic	rs76460014-?		5E-6		1.88	[1.44-2.47]	Illumina [7645193] (imputed)	N
628	chr3	5720773	5720774	rs148064379	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p26.1	Intergenic	rs148064379-G	0.999	5E-8	(AA)	0.368	unit increase	Illumina [NR] (imputed)	N
628	chr3	5720983	5720984	rs147463808	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p26.1	Intergenic	rs147463808-T	0.998	7E-8	(AA)	0.305	unit increase	Illumina [NR] (imputed)	N
628	chr3	5723817	5723818	rs4479577	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p26.1		rs4479577-C	0.516	7E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
628	chr3	5723817	5723818	rs4479577	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p26.1	EDEM1	rs4479577-T	0.482	5E-10		0.0142	[0.0097-0.0187] unit increase	Illumina [~ 250000] (imputed)	N
628	chr3	5723817	5723818	rs4479577	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p26.1	EDEM1	rs4479577-T	0.4813	1E-8		0.012443462	[0.0082-0.0167] unit increase	Affymetrix [11514654] (imputed)	N
628	chr3	5723817	5723818	rs4479577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p26.1		rs4479577-?	NR	8E-9				NR [~ 8900000] (imputed)	N
628	chr3	5724530	5724531	rs1869244	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	3p26.1	LOC105376939	rs1869244-A	0.32	3E-9		0.0123	[0.0064-0.0182] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
628	chr3	5725559	5725560	rs11721059	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p26.1	NR	rs11721059-T	0.465	1E-8		0.00617066	[0.0041-0.0083] unit increase	NR [9732723] (imputed)	N
629	chr3	5841017	5841018	rs7641425	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	3p26.1	intergenic	rs7641425-T	0.296326	1E-6	(omega-3 PUFA)			Illumina [621723]	N
629	chr3	5846501	5846502	rs2470653	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p26.1	EDEM1	rs2470653-A	0.228251898930911	5E-8		0.0035186	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
629	chr3	5853298	5853299	rs6781156	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	3p26.1	intergenic	rs6781156-A	0.26877	1E-6	(omega-3 PUFA)			Illumina [621723]	N
629	chr3	5859908	5859909	rs12494721	34847907	Tegelberg P	2021-11-30	BMC Oral Health	Genome-wide association study of periodontal pocketing in Finnish adults.	Periodontal pocket (adjusted for age and sex)	3,906 Finnish ancestry individuals	NA	3p26.1		rs12494721-T	0.14	3E-6		0.18	[0.1-0.26] number of affected teeth increase	Illumina [NR] (imputed)	N
629	chr3	5864405	5864406	rs73808275	34112972	DeMichele-Sweet MAA	2021-06-10	Mol Psychiatry	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Psychosis in Alzheimer's disease	4,551 European ancestry cases, 5,796 European ancestry controls, 894 African American or unknown ancestry cases, 1,076 African American or unknown ancestry controls	NA	3p26.1		rs73808275-A	NR	2E-6		1.52	[1.28-1.8]	Illumina [7105229] (imputed)	N
629	chr3	5882682	5882683	rs977905	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	3p26.1	LOC105376941	rs977905-?	NR	1E-6	(omega-6 PUFA)			Illumina [621723]	N
629	chr3	5892058	5892059	rs11706133	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	3p26.1	MIR4790, LOC101927347	rs11706133-G	0.11	6E-6		0.29	unit increase	Illumina [5600000] (imputed)	N
629	chr3	5893775	5893776	rs920065	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	3p26.1	MRPS35P1, MRPS36P1	rs920065-C	0.824	4E-7		0.028	[0.016-0.04] unit increase	Affymetrix [up to 73355677] (imputed)	N
630	chr3	6017301	6017302	rs12494537	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	3p26.1		rs12494537-?	NR	8E-7		1.54388		NR [NR] (imputed)	N
630	chr3	6027485	6027486	rs7615041	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	3p26.1	AC027119.1	rs7615041-A		4E-6		0.09	[0.051-0.129] unit decrease	Illumina [11789982] (imputed)	N
631	chr3	6081684	6081685	rs73123510	30185882	Zeiger AM	2018-09-05	Sci Rep	Genetic Determinants of Telomere Length in African American Youth.	Telomere length	492 African American children and adolescents	NA	3p26.1	GRM7	rs73123510-C	0.061	1E-6		0.242	[0.146-0.339] unit decrease	Affymetrix [7519176] (imputed)	N
632	chr3	6225538	6225539	rs6807284	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p26.1	NR	rs6807284-?	NR	1E-16		8.296	NR z score decrease	Illumina [at least 830937] (imputed)	N
632	chr3	6231100	6231101	rs79630941	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	3p26.1		rs79630941-G	NR	9E-6		23.082	[13.11-33.06] unit decrease	Illumina [NR] (imputed)	N
632	chr3	6255996	6255997	rs6774280	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	3p26.1	intergenic	rs6774280-?	0.23	9E-7	(CSJC , EA, RF-)	5.5	[NR] unit decrease	Illumina [534053]	N
632	chr3	6263449	6263450	rs143146694	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	3p26.1	GRM7	rs143146694-T	0.035	3E-11		37.81	[26.7-48.92] unit increase	Illumina [4962728] (imputed)	N
633	chr3	6295854	6295855	rs116144992	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (CGI-S score)	1,390 European ancestry cases	NA	3p26.1		rs116144992-?	NR	6E-6	(MLM)	0.3702252	[0.21-0.53] unit decrease	Illumina [~ 9000000] (imputed)	N
633	chr3	6305908	6305909	rs55841186	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	3p26.1	NR	rs55841186-?	NR	7E-7		0.12093	[0.073-0.169] unit decrease	Affymetrix [9658292] (imputed)	N
633	chr3	6362620	6362621	rs75614409	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSG6	5,348 Icelandic ancestry individuals	NA	3p26.1		rs75614409-G	0.05773	4E-12		0.0769403	[0.055-0.099] unit increase	Illumina [7506463] (imputed)	N
633	chr3	6377694	6377695	rs271066	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	3p26.1	intergenic	rs271066-?	NR	3E-6		0.6491	unit decrease	Illumina [2543888] (imputed)	N
633	chr3	6380035	6380036	rs157298	31081985	Stein MB	2019-05-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of psychological resilience in U.S. Army soldiers.	Psychological resilience (outcome-based)	1,558 European ancestry resilient cases, 381 European ancestry controls with post-deployment mental disorder	NA	3p26.1	intergenic	rs157298-T	0.1249	1E-7		1.8351991		Illumina [at least 664457] (imputed)	N
633	chr3	6390336	6390337	rs1435723	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hormone measurements	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	3p26.1	AC026167.1	rs1435723-?	NR	6E-7	(BMI-adjusted adiponectin)	0.32	[0.2-0.44] unit increase	Illumina [14948665] (imputed)	N
634	chr3	6427098	6427099	rs17234557	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	EDEM1	rs17234557-?	NR	9E-7	(PC 34:4)	0.63415235	[0.38-0.89] unit increase	Affymetrix [at least 2500000] (imputed)	N
634	chr3	6481624	6481625	rs17216035	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p26.1	GRM7	rs17216035-A	0.28	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
634	chr3	6518181	6518182	rs155203	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Parabacteroides)	1,068 Japanese ancestry individuals	NA	3p26.1	intergenic	rs155203-G	0.19	6E-6	(female)	0.102	[0.059-0.145] unit increase	Illumina [6380737] (imputed)	N
635	chr3	6562330	6562331	rs155206	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p26.1	NR	rs155206-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
636	chr3	6721930	6721931	rs1522468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	EDEM1	rs1522468-?	NR	1E-6	(TAG 58:10)	4.9068	[2.91-6.9] unit decrease	Affymetrix [at least 2500000] (imputed)	N
636	chr3	6724764	6724765	rs75373974	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	3p26.1	NR	rs75373974-?	NR	2E-6		0.1829	[0.11-0.26] unit increase	Illumina [~ 7800000] (imputed)	N
636	chr3	6779795	6779796	rs7649818	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p26.1	GRM7-AS3, AC069277.2, GRM7, MRPS36P1	rs7649818-A	NR	2E-6	(daytime resting duration, weekdays)	0.103	[0.061-0.145] unit increase	Affymetrix [7141204] (imputed)	N
636	chr3	6800810	6800811	rs168302	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	3p26.1	GRM7	rs168302-T	NR	1E-7	(Pi10, Cases)	0.016	[0.0082-0.0238] unit decrease	Illumina [7600000] (imputed)	N
636	chr3	6808217	6808218	rs76493322	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Airway imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	3p26.1	GRM7	rs76493322-A	NR	3E-7	(WAP, Cases)	0.36	[0.22-0.5] unit decrease	Illumina [7600000] (imputed)	N
636	chr3	6811320	6811321	rs185934952	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p26.1	GRM7-AS3, GRM7, MRPS36P1, GRM7-AS2	rs185934952-A	NR	2E-6	(sleep latency, weekdays)	0.8564	[0.51-1.21] unit increase	Affymetrix [7141204] (imputed)	N
637	chr3	6856183	6856184	rs77016368	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	3p26.1	NR	rs77016368-A	0.0057	1E-8		0.5618	[0.37-0.75] unit increase	Illumina [~ 10600000] (imputed)	N
637	chr3	6903296	6903297	rs3749380	19165232	Otowa T	2009-01-23	J Hum Genet	Genome-wide association study of panic disorder in the Japanese population.	Panic disorder	200 Japanese ancestry cases, 200 Japanese ancestry controls	NA	3p26.1	GRM7	rs3749380-?	0.25	2E-6				Affymetrix [253903]	N
638	chr3	6949229	6949230	rs1516568	32472697	Verma SS	2020-05-30	Clin Pharmacol Ther	Genome-wide association study of platelet reactivity and cardiovascular response in patients treated with clopidogrel: a study by the International Clopidogrel Pharmacogenomics Consortium (ICPC).	Platelet reactivity in response to clopidogrel treatment	2,592 European ancestry individuals	NA	3p26.1	GRM7	rs1516568-G	0.885066	3E-6	(adjusted for CYP2C19*2)	0.199481	[0.12-0.28] unit decrease	Illumina [5009928] (imputed)	N
638	chr3	6995425	6995426	rs2163735	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	3p26.1		rs2163735-G	0.7472	2E-6	(East Asian)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 47000000] (imputed)	N
638	chr3	7000337	7000338	rs17750973	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.1	NR	rs17750973-G	0.0122	3E-9	(IGKV4-1)	0.05813	NR unit increase	Illumina [1671387] (imputed)	N
638	chr3	7005020	7005021	rs1516570	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p26.1	NR	rs1516570-A	NR	5E-6		1.06	[NR]	Illumina [7158791] (imputed)	N
638	chr3	7010080	7010081	rs480409	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all topoisomerase inhibitors)	106 Japanese ancestry cases, 187 Japanese ancestry controls	NA	3p26.1	GRM7	rs480409-G	0.348	9E-6	(Recessive model)	1.842	[1.307-2.596]	Illumina [733202]	N
638	chr3	7010716	7010717	rs507385	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	3p26.1	GRM7	rs507385-A	NR	9E-6		0.13	[0.071-0.189] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
638	chr3	7028318	7028319	rs6808554	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	3p26.1		rs6808554-T	0.02806	2E-6		2.306	[1.63699999999999-3.247]	Affymetrix [7975321] (imputed)	N
638	chr3	7058506	7058507	rs74971332	32277301	Okuda H	2020-04-10	Clin Exp Nephrol	Genome-wide association study identifies new loci for albuminuria in the Japanese population.	Urinary albumin excretion	7,805 Japanese ancestry individuals	NA	3p26.1	GRM7	rs74971332-G	0.055	9E-10		26.43	[17.99-34.87] unit increase	Illumina [4962728] (imputed)	N
639	chr3	7110588	7110589	rs9827892	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p26.1	NR	rs9827892-G	0.248	1E-8		0.00712912	[0.0047-0.0096] unit increase	NR [9732723] (imputed)	N
639	chr3	7116695	7116696	rs6772333	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p26.1	LMCD1	rs6772333-?	NR	6E-6	(TAG 52:6)	0.16819464	[0.095-0.241] unit increase	Affymetrix [at least 2500000] (imputed)	N
639	chr3	7122034	7122035	rs114690037	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	3p26.1	NR	rs114690037-C	0.01536	3E-6		0.57	[0.46-0.68] unit decrease	Illumina [10677593] (imputed)	N
639	chr3	7164222	7164223	rs9872427	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	HDL cholesterol levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	3p26.1	GRM7	rs9872427-?		4E-6	(EA)	0.14203545	[0.082-0.202] unit increase	Illumina [13620258] (imputed)	N
639	chr3	7188115	7188116	rs3749448	26876947	Saito T	2016-02-11	Biol Psychiatry	Pharmacogenomic Study of Clozapine-Induced Agranulocytosis/Granulocytopenia in a Japanese Population.	Clozapine-induced agranulocytosis/granulocytopenia in treatment-resistant schizophrenia	50 Japanese ancestry cases, 2905 Japanese ancestry controls	NA	3p26.1	GRM7	rs3749448-A	0.2	2E-6		2.96	[2.52-3.4]	Illumina [522694]	N
639	chr3	7189616	7189617	rs111261826	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p26.1	GRM7	rs111261826-C	0.32099999999999995	4E-11		1.0283957		Affymetrix [11880941] (imputed)	N
640	chr3	7210894	7210895	rs28502528	33607172	Nygaard M	2021-02-16	Mech Ageing Dev	Genome-wide association analysis of cognitive function in Danish long-lived individuals.	Cognitive function in longevity	490 Danish ancestry individuals	NA	3p26.1	GRM7	rs28502528-G	0.3073	4E-7		3.391	[NR] unit increase	Illumina [4827900] (imputed)	N
640	chr3	7285684	7285685	rs2007029	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	3p26.1	GRM7	rs2007029-?		4E-6				Illumina [5970354] (imputed)	N
640	chr3	7336451	7336452	rs2133450	26856250	Sacchetti E	2016-02-09	Pharmacogenomics J	The GRM7 gene, early response to risperidone, and schizophrenia: a genome-wide association study and a confirmatory pharmacogenetic analysis.	Early response to risperidone in schizophrenia	86 European ancestry cases	NA	3p26.1	GRM7	rs2133450-?	NR	4E-8				Affymetrix [350796]	N
641	chr3	7377584	7377585	rs182294807	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	3p26.1	NR	rs182294807-?	NR	7E-6		0.795442	[0.45-1.14] unit increase	NR [13958389] (imputed)	N
641	chr3	7384420	7384421	rs77506983	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	3p26.1	NR	rs77506983-A	0.9812	5E-6		0.615	[0.35-0.88] unit decrease	Illumina [NR] (imputed)	N
641	chr3	7403645	7403646	rs13080594	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	3p26.1	GRM7	rs13080594-?	NR	8E-7	(ZKPQ-neuroticism anxiety)			Affymetrix [702866]	N
641	chr3	7466277	7466278	rs13353402	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.1	NR	rs13353402-?	NR	9E-7				Affymetrix [NR]	N
641	chr3	7470142	7470143	rs35226739	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	3p26.1	Intergenic	rs35226739-?		9E-7		2.647	[NR]	Affymetrix [492217] (imputed)	N
642	chr3	7472820	7472821	rs73015520	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.1	NR	rs73015520-T	0.01916	1E-11	(APOC1)	0.03159	NR unit increase	Illumina [1671387] (imputed)	N
642	chr3	7487887	7487888	rs6771707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p26.1		rs6771707-?	NR	4E-8				NR [~ 8900000] (imputed)	N
642	chr3	7489992	7489993	rs9865843	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p26.1	GRM7	rs9865843-A	0.5197	3E-9		0.0906	[0.061-0.121] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
642	chr3	7490916	7490917	rs71308549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p26.1		rs71308549-T	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
642	chr3	7490916	7490917	rs71308549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p26.1		rs71308549-T	NR	7E-10		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
642	chr3	7494416	7494417	rs2229902	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p26.1		rs2229902-A	0.5498	5E-8		0.12459069	[0.078-0.171] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
642	chr3	7494416	7494417	rs2229902	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p26.1		rs2229902-A	0.5499	2E-10		0.09538827	[0.066-0.124] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
642	chr3	7529554	7529555	rs9870680	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	3p26.1	GRM7	rs9870680-T	0.44	1E-6		1.19	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
642	chr3	7538201	7538202	rs1450100	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	3p26.1	GRM7	rs1450100-?	0.65	8E-6	(CL)	1.54	[1.85-1.27]	Illumina [NR]	N
644	chr3	7744037	7744038	rs148515972	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p26.1	NR	rs148515972-A	0.02	5E-7		12.48	[NR] unit increase	Affymetrix [7884700] (imputed)	N
644	chr3	7755587	7755588	rs73809689	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p26.1	NR	rs73809689-C	0.01045	2E-8	(GYG2)	0.01261	NR unit increase	Illumina [1671387] (imputed)	N
644	chr3	7820572	7820573	rs13068675	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p26.1	NR	rs13068675-T	0.155	2E-6	(Females)	0.380781	[0.23-0.54] unit increase	Illumina [~ 6600000] (imputed)	N
644	chr3	7823054	7823055	rs162211	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p26.1	intergenic	rs162211-?	NR	4E-6		0.147	[0.067-0.227] unit increase	Illumina [at least 13000000] (imputed)	N
644	chr3	7839476	7839477	rs162212	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3p26.1	NR	rs162212-A	NR	6E-6	(random effect)	1.04	NR	NR [6904914] (imputed)	N
644	chr3	7859162	7859163	rs4564969	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p26.1	NR	rs4564969-?	NR	5E-7				Affymetrix [NR]	N
645	chr3	7891261	7891262	rs391664	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p26.1		rs391664-?	NR	8E-6		0.2345648	[0.13-0.34] unit decrease	Illumina [9875426] (imputed)	N
645	chr3	7891261	7891262	rs391664	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	3p26.1		rs391664-?	NR	4E-6		0.2731087	[0.16-0.39] unit decrease	Illumina [9842460] (imputed)	N
645	chr3	7907076	7907077	rs9821717	30247649	Gonzalez-Serna D	2018-09-21	Rheumatology (Oxford)	Analysis of the genetic component of systemic sclerosis in Iranian and Turkish populations through a genome-wide association study.	Systemic sclerosis	764 Middle Eastern ancestry cases, 1,343 Middle Eastern ancestry controls	NA	3p26.1	GRM7, LOC101927394	rs9821717-?	NR	2E-6		1.4285715	[1.25-1.67]	Illumina [5698748] (imputed)	N
645	chr3	7909367	7909368	rs9813540	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p26.1	NR	rs9813540-?	NR	6E-8		5.412	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
645	chr3	7920648	7920649	rs73130949	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p26.1	NR	rs73130949-?	NR	2E-6		0.5089	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
645	chr3	7920648	7920649	rs73130949	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p26.1	NR	rs73130949-?	NR	2E-7		0.4934	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
645	chr3	7944223	7944224	rs138712596	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p26.1		rs138712596-?	NR	4E-8				NR [~ 8900000] (imputed)	N
645	chr3	7962059	7962060	rs7625080	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid number (single vs multiple)	636 African American or European ancestry female individuals with single fibroid, 822 African American or European ancestry female individuals with multiple fibroids	NA	3p26.1	GRM7, LMCD1	rs7625080-A	0.66	9E-7	(AA)	1.8867927	[1.47-2.44]	Affymetrix [up to 9627525] (imputed)	N
645	chr3	7962059	7962060	rs7625080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p26.1	Intergenic	rs7625080-A	0.7115	2E-8	(MTAG)	0.0143	[0.0094-0.0192] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
645	chr3	7963287	7963288	rs55939894	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Refractive astigmatism	88,005 European ancestry individuals		3p26.1	LOC101927394	rs55939894-A	0.813	9E-6		0.016	[0.0082-0.0238] dioptres decrease	NR [5900115] (imputed)	N
645	chr3	7982826	7982827	rs4591494	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Factor VII	886 European ancestry individuals	NA	3p26.1	intergenic	rs4591494-?	0.19	9E-6				Affymetrix [70897]	N
645	chr3	7989050	7989051	rs6780892	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p26.1	LMCD1-AS1	rs6780892-T	0.8607	4E-7		0.0467	[0.028-0.065] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
645	chr3	7989050	7989051	rs6780892	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p26.1	LMCD1-AS1	rs6780892-T	0.8607	3E-6		0.0433	[0.025-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
646	chr3	7997952	7997953	rs10510382	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	3p26.1	GRM7, LOC100288428	rs10510382-?	NR	6E-6		3.033	unit increase (EA, Australian cohort)	Illumina [610255]	N
646	chr3	8001530	8001531	rs6780194	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p26.1	NR	rs6780194-?	NR	9E-6		0.044417	[0.025-0.064] unit increase	Affymetrix [805426] (imputed)	N
646	chr3	8004827	8004828	rs7643459	31469419	Manichaikul A	2019-08-30	Int J Cancer	Identification of novel epithelial ovarian cancer loci in Women of African Ancestry.	Epithelial ovarian cancer	755 African ancestry cases, 1,235 African ancestry controls	NA	3p26.1	LOC101927394	rs7643459-T	0.362	8E-7		1.4	[1.22-1.60]	Illumina [12486624] (imputed)	N
646	chr3	8016954	8016955	rs1825500	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	3p26.1	GRM7, LMCD1_AS1	rs1825500-C	0.81	6E-6	(men)	0.129	[0.074-0.184] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
646	chr3	8016954	8016955	rs1825500	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	3p26.1	GRM7, LMCD1_AS1	rs1825500-C	0.81	4E-6		0.08	[0.047-0.113] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
646	chr3	8025781	8025782	rs114706447	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p26.1		rs114706447-?	NR	4E-9				Illumina [1128286]	N
646	chr3	8036291	8036292	rs9814965	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3p26.1	NR	rs9814965-A	NR	3E-6	(GEE model)	0.8509	[0.5-1.21] unit decrease	NR [NR] (imputed)	N
646	chr3	8054596	8054597	rs35144233	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung cancer	1,993 European ancestry cases, 33,960 European ancestry controls	NA	3p26.1	LMCD1-AS1	rs35144233-A	0.024	7E-7		1.97	[1.50-2.57]	Illumina [9327222] (imputed)	N
646	chr3	8054596	8054597	rs35144233	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p26.1	LMCD1-AS1	rs35144233-A	0.024	2E-6		2.42	[1.69-3.48]	Illumina [8672852] (imputed)	N
646	chr3	8089684	8089685	rs17751825	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p26.1	intergenic	rs17751825-G	0.0197562712822692	5E-6	(F_Sutterellaceae_HB)	1.20651	[0.69-1.72] unit decrease	Illumina [7711310] (imputed)	N
647	chr3	8138040	8138041	rs1554194	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p26.1	NA	rs1554194-C	0.5046	9E-10		0.0105	[0.0072-0.0138] unit increase	NR [~ 27400000] (imputed)	N
647	chr3	8141951	8141952	rs13317787	26083657	Stafford-Smith M	2015-06-17	Kidney Int	Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci.	Acute kidney injury in coronary artery bypass surgery (creatinine rise)	873 European ancestry cases	380 European ancestry cases	3p25.3	GRM7, LMCD1-AS1	rs13317787-A	0.028	5E-7		21.66	[13.19-30.13] unit increase	Illumina [530716] (imputed)	N
647	chr3	8143303	8143304	rs9862842	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs9862842-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
647	chr3	8143303	8143304	rs9862842	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.3		rs9862842-?	NR	6E-9				NR [~ 8900000] (imputed)	N
647	chr3	8147349	8147350	rs543719221	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p25.3	AC018832.1, LMCD1-AS1	rs543719221-A	0.0013	9E-7		1.3337	[0.8-1.87] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
647	chr3	8156615	8156616	rs1400190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p25.3	Intergenic	rs1400190-A	0.6064	2E-8	(MTAG)	0.0076	[0.0051-0.0101] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
647	chr3	8165501	8165502	rs13088735	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	3p25.3	NR	rs13088735-T	0.02	3E-6		1.48	[1.25-1.75]	Illumina [~ 1113287] (imputed)	N
647	chr3	8168962	8168963	rs2633644	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3p25.3	NR	rs2633644-?	NR	3E-6		0.097408	[0.057-0.138] unit increase	NR [13958389] (imputed)	N
647	chr3	8182657	8182658	rs502410	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p25.3	NR	rs502410-A		3E-17		0.09	[0.07-0.11] unit increase	NR [NR]	N
647	chr3	8186685	8186686	rs404753	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal middle frontal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p25.3	NR	rs404753-?		8E-6				Illumina [4322238] (imputed)	N
647	chr3	8190692	8190693	rs75581672	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p25.3	intergenic	rs75581672-T	0.0249105259220539	1E-6	(F_Sutterellaceae_HB)	1.17303	[0.7-1.64] unit decrease	Illumina [7711310] (imputed)	N
647	chr3	8194733	8194734	rs9681162	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3p25.3	AK124857, LMCD1-AS1	rs9681162-T	0.6799	2E-11		6.699	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
647	chr3	8196940	8196941	rs178597	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p25.3	NA	rs178597-?		6E-48				Affymetrix, Illumina [NR] (imputed)	N
647	chr3	8198582	8198583	rs62236760	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	3p25.3	NR	rs62236760-A	0.293	6E-10		0.0473	[0.032-0.062] unit decrease	Illumina [~ 10600000] (imputed)	N
647	chr3	8223937	8223938	rs6777332	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p25.3	Intergenic	rs6777332-C	0.7225	6E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
647	chr3	8228629	8228630	rs388458	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p25.3	NR	rs388458-?	NR	5E-7		5.039	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
647	chr3	8238325	8238326	rs3912613	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	3p25.3	NR	rs3912613-G	NR	3E-6		0.01218	[0.0071-0.0173] unit increase	Illumina [541614]	N
647	chr3	8242301	8242302	rs59756727	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x environmental factors (including physical activity) interaction	8,155 Korean ancestry individuals	NA	3p25.3	LOC100288428	rs59756727-?	NR	6E-7				Affymetrix [5908111] (imputed)	N
647	chr3	8242301	8242302	rs59756727	33654129	Jung HU	2021-03-02	Sci Rep	Identification of genetic loci affecting body mass index through interaction with multiple environmental factors using structured linear mixed model.	BMI x  environmental factors (excluding physical activity) interaction	8,155 Korean ancestry individuals	NA	3p25.3	LOC100288428	rs59756727-?	NR	2E-8				Affymetrix [5908111] (imputed)	N
647	chr3	8246178	8246179	rs12635303	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p25.3	NR	rs12635303-C	0.316103	3E-9		0.040139467	[0.027-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
647	chr3	8246178	8246179	rs12635303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p25.3	Intergenic	rs12635303-T	0.3071	2E-9		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
647	chr3	8249267	8249268	rs55859553	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p25.3		rs55859553-?	NR	1E-8				NR [~ 8900000] (imputed)	N
647	chr3	8250521	8250522	rs9847133	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	3p25.3	LOC101927394, LMCD1-AS1	rs9847133-T	0.633	1E-6		1.2	[1.11-1.30]	Affymetrix, Illumina [12148595] (imputed)	N
647	chr3	8250789	8250790	rs9866825	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	3p25.3	NR	rs9866825-A	0.41	8E-6		1.18	[0.67-1.69] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
647	chr3	8252090	8252091	rs62236816	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p25.3		rs62236816-A	0.6431	5E-13	(conditional-joint)	0.0106	[0.0077-0.0135] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
648	chr3	8257573	8257574	rs10510388	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p25.3	Intergenic	rs10510388-A	0.651	2E-17	(MTAG)	0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
648	chr3	8258173	8258174	rs17048855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p25.3		rs17048855-A	0.3426	3E-13		0.0108	[0.0079-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
648	chr3	8258173	8258174	rs17048855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p25.3	Intergenic	rs17048855-A	0.3426	3E-17	(MTAG)	0.0116	[0.0089-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
648	chr3	8258173	8258174	rs17048855	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p25.3	Intergenic	rs17048855-A	0.3464	1E-14	(MTAG)	0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
648	chr3	8267842	8267843	rs9831671	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (intracranial brain volume)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	3p25.3	LMCD1	rs9831671-T	NR	9E-7		4.27	percent increase	Affymetrix [8762422] (imputed)	N
648	chr3	8275540	8275541	rs17048879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p25.3	Intergenic	rs17048879-T	0.6387	4E-13	(MTAG)	0.0135	[0.0098-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
648	chr3	8275540	8275541	rs17048879	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p25.3	Intergenic	rs17048879-T	0.6382	2E-8		0.0133	[0.0086-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
648	chr3	8305464	8305465	rs775437676	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3p25.3	LMCD1-AS1	rs775437676-A	0.0018	8E-7		0.9154	[0.55-1.28] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
648	chr3	8314923	8314924	rs923381	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 5 years in renal transplantation (recipient effect)	Up to 2,921 European ancestry individuals	NA	3p25.3	LMCD1-AS1	rs923381-T	NR	5E-6				Illumina [up to 3935887] (imputed)	N
648	chr3	8334530	8334531	rs9816551	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p25.3	LMCD1-AS1	rs9816551-G	0.494	6E-7		1.34	[1.20-1.51]	Illumina [8672852] (imputed)	N
648	chr3	8386376	8386377	rs114824220	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p25.3	LMCD1-AS1	rs114824220-T	0.0018	2E-6		0.5566	[0.33-0.79] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
649	chr3	8392813	8392814	rs149772317	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	NR	rs149772317-A	0.01	6E-10		17.14	[NR] unit increase	Affymetrix [7884700] (imputed)	N
649	chr3	8445022	8445023	rs359027	26879886	Wakil SM	2016-02-16	Clin Genet	A common variant association study reveals novel susceptibility loci for low HDL-cholesterol levels in ethnic Arabs.	Low high density lipoprotein cholesterol levels	1,747 Saudi Arab ancestry cases, 2,335 Saudi Arab ancestry controls	517 Saudi Arab ancestry cases, 896 Saudi Arab ancestry controls	3p25.3	LMCD1	rs359027-G	NR	2E-10		1.3	[1.10-1.54]	Affymetrix [~ 8000000] (imputed)	N
649	chr3	8474229	8474230	rs12632216	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	3p25.3		rs12632216-?	NR	9E-6		0.06	[0.033-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
649	chr3	8475221	8475222	rs2167036	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p25.3	LMCD1	rs2167036-A	0.0179472942279614	1E-6	(G_Aestuariispira_RNT)	0.853593	[0.51-1.2] unit decrease	Illumina [7711310] (imputed)	N
649	chr3	8496370	8496371	rs74621754	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.3	LOC100288428	rs74621754-G		3E-8		0.36	unit increase	Affymetrix [at least 2696785] (imputed)	N
650	chr3	8527881	8527882	rs7632954	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p25.3	LOC100288428	rs7632954-?	NR	4E-6		0.089	[0.04-0.138] unit increase	Illumina [at least 13000000] (imputed)	N
650	chr3	8543294	8543295	rs4349489	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p25.3		rs4349489-?	NR	2E-9				NR [~ 8900000] (imputed)	N
650	chr3	8549664	8549665	rs1994876	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.3		rs1994876-?	NR	5E-8				NR [~ 8900000] (imputed)	N
650	chr3	8553086	8553087	rs1873944	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	3p25.3		rs1873944-C	NR	9E-9		0.0617	[0.041-0.083] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
650	chr3	8567254	8567255	rs2197901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p25.3		rs2197901-?	NR	2E-14				NR [~ 8900000] (imputed)	N
650	chr3	8578293	8578294	rs114122346	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Rumination (response to stress)	1,758 European ancestry individuals	NA	3p25.3	LMCD1	rs114122346-T	NR	3E-6		0.2038	NR unit decrease	Illumina [3474641] (imputed)	N
650	chr3	8592116	8592117	rs2279974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p25.3	LMCD1	rs2279974-G	0.732709	7E-10		0.015828913	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
650	chr3	8592116	8592117	rs2279974	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p25.3	NR	rs2279974-G	0.733216	2E-16		0.017355	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
650	chr3	8599512	8599513	rs73022318	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p25.3	LMCD1	rs73022318-G	NR	8E-6	(men)	0.0351048	[0.02-0.051] unit increase	Illumina [13520550] (imputed)	N
650	chr3	8603242	8603243	rs165177	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse after mitral valve surgery	1,903 European ancestry cases, 428,916 European ancestry controls	NA	3p25.3		rs165177-T	0.27	3E-9		1.29		NR [NR] (imputed)	N
650	chr3	8603242	8603243	rs165177	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	3p25.3		rs165177-T	0.27	2E-9		1.17		NR [NR] (imputed)	N
650	chr3	8603242	8603243	rs165177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p25.3		rs165177-C	NR	5E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
650	chr3	8603242	8603243	rs165177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p25.3	LMCD1, LMCD1-AS1	rs165177-C	0.745223	2E-12		0.018328005	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
650	chr3	8603242	8603243	rs165177	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.3	NR	rs165177-C	0.752608	7E-18				Affymetrix, Illumina [24588908] (imputed)	N
650	chr3	8606838	8606839	rs1027327	23459209	Faraco J	2013-01-01	PLoS Genet	ImmunoChip study implicates antigen presentation to T cells in narcolepsy.	Narcolepsy	1,886 European ancestry cases, 10,421 European ancestry controls	NA	3p25.3	LMCD1/Dyxin	rs1027327-C	0.095	9E-6		1.36	[1.19-1.56]	Illumina [111240]	N
650	chr3	8608919	8608920	rs171408	26301497	Dina C	2015-08-24	Nat Genet	Genetic association analyses highlight biological pathways underlying mitral valve prolapse.	Mitral valve prolapse	1,442 European ancestry cases, 2,439 European ancestry controls	1,422 European ancestry cases, 6,779 European ancestry controls	3p25.3	LMCD1	rs171408-G	0.22	1E-11		1.32	[1.22-1.43]	Affymetrix, Illumina [~ 4800000] (imputed)	N
650	chr3	8640308	8640309	rs6763944	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p25.3	LMCD1-AS1	rs6763944-T	0.7234	5E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix [18391927] (imputed)	N
650	chr3	8644700	8644701	rs112800703	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LMCD1-AS1	rs112800703-?	NR	1E-8	(female)	1.05304	[NR] unit decrease	Affymetrix [NR] (imputed)	N
650	chr3	8646023	8646024	rs430312	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	3p25.3	C3orf32	rs430312-A		6E-6		1.24	[1.13-1.36]	Illumina [569200]	N
651	chr3	8675538	8675539	rs2276800	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p25.3	NR	rs2276800-?	NR	6E-17		0.32	[0.24-0.4] unit decrease	Illumina [at least 830937] (imputed)	N
651	chr3	8684176	8684177	rs164955	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Leg total mass	2,294 White British ancestry female individuals	NA	3p25.3		rs164955-A	NR	7E-9		2.06	kg increase	NR [6137607] (imputed)	N
651	chr3	8685800	8685801	rs164958	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p25.3	NR	rs164958-C	0.287	4E-6		0.20009	[0.12-0.28] unit increase	Illumina [~ 6600000] (imputed)	N
651	chr3	8719950	8719951	rs405182	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	3p25.3	NR	rs405182-G	0.692795	2E-6		1.1764705	[1.1-1.25]	Illumina [8992756] (imputed)	N
651	chr3	8719950	8719951	rs405182	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	22,916 European ancestry cases, 32,504 European ancestry controls	NA	3p25.3	NR	rs405182-G	0.692795	5E-6		1.1904762	[1.1-1.28]	Illumina [up to 8992756] (imputed)	N
651	chr3	8725186	8725187	rs113284510	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	3p25.3		rs113284510-T	0.0749	2E-8		5.576	z score decrease	Illumina [7275796] (imputed)	N
651	chr3	8731481	8731482	rs350815	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	3p25.3	NR	rs350815-T	0.56	1E-5		0.85	[NR]	Affymetrix [87696888] (imputed)	N
652	chr3	8796861	8796862	rs11718289	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	3p25.3	CAV3, OXTR	rs11718289-T	0.353661	3E-7		0.8016812	[0.52-1.09] unit increase	Illumina [at least 621854] (imputed)	N
652	chr3	8797273	8797274	rs147229047	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p25.3		rs147229047-?	NR	6E-9				Illumina [1128286]	N
652	chr3	8806423	8806424	rs73132848	27339598	Ulveling D	2016-07-29	Hepatology	A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients.	Liver fibrosis severity in HIV/hepatitis C co-infection	289 French ancestry cases	NA	3p25.3	OXTR	rs73132848-?		1E-9		1.13	[0.78-1.48] unit increase	Illumina [8426597] (imputed)	N
652	chr3	8808514	8808515	rs237899	22064162	Edwards AC	2011-11-05	Psychiatr Genet	Genome-wide association study of comorbid depressive syndrome and alcohol dependence.	Depression and alcohol dependence	467 European ancestry cases, 407 European ancestry controls	NA	3p25.3	OXTR	rs237899-?	NR	2E-6		1.69	[1.36-2.10]	Illumina [876476]	N
652	chr3	8815422	8815423	rs62243377	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3p25.3	Mir_548, RAD18	rs62243377-C	0.01	5E-7	(African American)	1.47	[0.9-2.04] unit increase	Illumina [up to 13042663] (imputed)	N
652	chr3	8817422	8817423	rs149611468	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p25.3	OXTR, RAD18	rs149611468-T	0.9888	6E-15		1.146		Affymetrix [11880941] (imputed)	N
652	chr3	8817422	8817423	rs149611468	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p25.3	OXTR, RAD18	rs149611468-T	0.9888	6E-15		1.1539606		Affymetrix [11880941] (imputed)	N
652	chr3	8817422	8817423	rs149611468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p25.3		rs149611468-?	NR	7E-9				NR [~ 8900000] (imputed)	N
652	chr3	8843261	8843262	rs345071	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p25.3	Intergenic	rs345071-T	NR	8E-6	(adjusted for total body fat)	0.0897	[0.05-0.129] unit decrease	Illumina [8511049] (imputed)	N
652	chr3	8849581	8849582	rs115155040	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	3p25.3	CAV3	rs115155040-A	NR	6E-6		3.303	NR	Illumina [up to 4495750] (imputed)	N
652	chr3	8849581	8849582	rs115155040	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	229 European ancestry cases, 1,088 European ancestry controls	NA	3p25.3	CAV3	rs115155040-A	0.01976	6E-6		3.303	[1.968-5.543]	Illumina [4388215] (imputed)	N
652	chr3	8860240	8860241	rs345066	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p25.3	RAD18	rs345066-?	NR	8E-6	(dimethylglycine)	0.16323641	[0.092-0.235] unit decrease	Affymetrix [at least 2500000] (imputed)	N
652	chr3	8863808	8863809	rs17049612	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p25.3	NR	rs17049612-?	NR	6E-7		0.3986	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
652	chr3	8885327	8885328	rs62243445	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in low alcohol consumption	8,716 individuals	NA	3p25.3	NR	rs62243445-?	NR	2E-6		0.1282	[0.075-0.181] unit increase	Illumina [~ 7800000] (imputed)	N
653	chr3	8922457	8922458	rs45449196	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p25.3	Intergenic	rs45449196-?	NR	9E-6		2.28	[NR]	Affymetrix [492217] (imputed)	N
653	chr3	8928890	8928891	rs34003290	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p25.3		rs34003290-?	NR	1E-9				NR [~ 8900000] (imputed)	N
653	chr3	8931037	8931038	rs193921	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p25.3		rs193921-T	NR	1E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
653	chr3	8947600	8947601	rs547904	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	3p25.3		rs547904-G	NR	5E-8		0.0505	[0.032-0.069] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
653	chr3	8970082	8970083	rs660158	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	3p25.3		rs660158-A	0.24	2E-12		0.09	unit decrease	Illumina [2093892] (imputed)	N
653	chr3	8970082	8970083	rs660158	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	3p25.3		rs660158-A	0.24	7E-10		0.09	unit decrease	Illumina [2398641] (imputed)	N
653	chr3	8971786	8971787	rs524898	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p25.3	RAD18	rs524898-?		8E-6				Illumina [4322238] (imputed)	N
653	chr3	8987232	8987233	rs187941554	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	RAD18	rs187941554-A	0.01	3E-11		25.16	[NR] unit increase	Affymetrix [7884700] (imputed)	N
653	chr3	9000046	9000047	rs13093889	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.3		rs13093889-?	NR	8E-11				NR [~ 8900000] (imputed)	N
653	chr3	9003793	9003794	rs648153	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p25.3	Intergenic	rs648153-?		2E-6		1.1	[1.06-1.14]	Illumina [7645193] (imputed)	N
653	chr3	9027703	9027704	rs341785	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	3p25.3	RAD18	rs341785-A	0.768	3E-8		0.031	[0.019-0.043] SD units increase	NR [9926106] (imputed)	N
654	chr3	9047816	9047817	rs780927	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p25.3	Intergenic	rs780927-T	0.203	3E-8	(MTAG)	0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
654	chr3	9120003	9120004	rs2669989	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	3p25.3	SRGAP3	rs2669989-C	0.87	9E-6		1.369863	[1.23-1.51]	Affymetrix, Illumina [~ 8500000] (imputed)	N
654	chr3	9142024	9142025	rs544274585	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	3p25.3	SRGAP3	rs544274585-A	0.015	2E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
654	chr3	9145553	9145554	rs382196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p25.3		rs382196-T	0.3814	1E-8		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
654	chr3	9145553	9145554	rs382196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p25.3	Intergenic	rs382196-T	0.3814	2E-10	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
654	chr3	9147548	9147549	rs2543489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p25.3	Intergenic	rs2543489-A	0.404	3E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
654	chr3	9165083	9165095	rs201599726	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3p25.3	SRGAP3	rs201599726-TACACATACATAC	0.21102	5E-6		0.440458	[0.25-0.63] unit decrease	Illumina [6952813] (imputed)	N
655	chr3	9214816	9214817	rs76153987	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	3p25.3	SRGAP3	rs76153987-T	0.050	4E-6		0.195	[0.077-0.313] unit decrease	Illumina [6391392] (imputed)	N
655	chr3	9272116	9272117	rs143759286	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p25.3	NR	rs143759286-?	NR	2E-6		0.0081588	[0.0048-0.0115] unit increase	Affymetrix [805426] (imputed)	N
656	chr3	9311214	9311215	rs4686337	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 11)	3,566 European ancestry individuals	4,680 European ancestry individuals	3p25.3		rs4686337-T	0.482137585	2E-8				Illumina [7417619] (imputed)	N
656	chr3	9345217	9345218	rs4686340	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p25.3	NA	rs4686340-A	0.2513	6E-10		0.0123	[0.0084-0.0162] unit increase	NR [~ 27400000] (imputed)	N
656	chr3	9372123	9372124	rs2648555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p25.3		rs2648555-G	NR	5E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
656	chr3	9423082	9423083	rs2600196	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.3		rs2600196-?	NR	1E-10				NR [~ 8900000] (imputed)	N
656	chr3	9428269	9428270	rs2251361	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs2251361-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
657	chr3	9437460	9437461	rs6443237	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p25.3		rs6443237-G	0.34	4E-8		5.49	z score increase	Affymetrix [9061022] (imputed)	N
657	chr3	9437460	9437461	rs6443237	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p25.3		rs6443237-G	0.34	2E-13		7.33	z score increase	Affymetrix [9061022] (imputed)	N
657	chr3	9437460	9437461	rs6443237	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p25.3	NR	rs6443237-G	0.3313	2E-14				NR [9056863] (imputed)	N
657	chr3	9479141	9479142	rs2442825	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	3p25.3	SETD5	rs2442825-?		8E-6		0.237	[NR] unit decrease	Illumina [5970354] (imputed)	N
657	chr3	9497885	9497886	rs35667509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3p25.3		rs35667509-G	NR	1E-11		0.0246	[0.018-0.032] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
657	chr3	9498142	9498143	rs62246311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs62246311-?	NR	7E-13				Affymetrix [~ 8270000] (imputed)	N
657	chr3	9498142	9498143	rs62246311	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.3		rs62246311-?	NR	4E-13				NR [~ 8900000] (imputed)	N
657	chr3	9498518	9498519	rs112380819	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p25.3	SETD5	rs112380819-G	0.89762	1E-9		0.0136884	[0.0093-0.0181] unit decrease	Affymetrix [12370749]	N
657	chr3	9504098	9504099	rs62246314	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p25.3	SETD5	rs62246314-G	NR	4E-8		0.0113802	[0.0073-0.0154] unit increase	Affymetrix [10061374] (imputed)	N
657	chr3	9506284	9506285	rs117354149	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (inattention symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	3p25.3	SETD5	rs117354149-C	0.085	3E-6				Affymetrix [525356]	N
657	chr3	9507313	9507314	rs59302296	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.3	NA	rs59302296-A	0.0991	9E-12		0.0217	[0.015-0.028] unit increase	NR [~ 27400000] (imputed)	N
657	chr3	9511735	9511736	rs3774063	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p25.3	NR	rs3774063-C	0.898541	1E-11		0.0229222	[0.016-0.03] unit decrease	NR [NR]	N
657	chr3	9511974	9511975	rs62246320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p25.3		rs62246320-?	NR	4E-9				NR [~ 8900000] (imputed)	N
657	chr3	9514015	9514016	rs3872707	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p25.3	NR	rs3872707-G	0.8599	3E-11		0.0446	[0.031-0.058] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
657	chr3	9514015	9514016	rs3872707	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p25.3	NR	rs3872707-G	0.844	1E-11		0.037	[0.026-0.048] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
657	chr3	9517368	9517369	rs11542009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p25.3		rs11542009-T	NR	2E-8		0.0215	[0.014-0.029] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
657	chr3	9517576	9517577	rs17747739	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3p25.3	SETD5	rs17747739-T	0.0623	5E-6		0.0097	[0.0056-0.0138] unit increase	Affymetrix [~ 7740000] (imputed)	N
657	chr3	9518510	9518511	rs2279440	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	3p25.3	SETD5	rs2279440-?		3E-6	(M)	21.57	[12.5-30.64] unit decrease	Illumina [693128]	N
657	chr3	9533973	9533974	rs17050395	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p25.3		rs17050395-G	0.17	3E-9		5.93	z score increase	Affymetrix [9061022] (imputed)	N
657	chr3	9543641	9543642	rs62246343	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	3p25.3	LHFPL4	rs62246343-T	0.17	2E-8		0.0071	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
658	chr3	9636659	9636660	rs6443245	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p25.3	DUSP5P2, LHFPL4, MTMR14, CPNE9	rs6443245-T	NR	1E-6	(daytime napping)	0.6256	[0.37-0.88] unit decrease	Affymetrix [7141204] (imputed)	N
658	chr3	9640457	9640458	rs7634260	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3p25.3	NR	rs7634260-G	0.0622	9E-6		0.1228	[0.069-0.177] unit decrease	Illumina [up to 1980188] (imputed)	N
658	chr3	9640457	9640458	rs7634260	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-6 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3p25.3	NR	rs7634260-G	0.0622	3E-6		0.1519	[0.089-0.215] unit decrease	Illumina [up to 1980188] (imputed)	N
658	chr3	9640457	9640458	rs7634260	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Delta-5 desaturase activity	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3p25.3	NR	rs7634260-G	0.0622	9E-6		0.1319	[0.074-0.19] unit increase	Illumina [up to 1980188] (imputed)	N
658	chr3	9689146	9689147	rs1085719	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3p25.3	NR	rs1085719-A	0.0465	7E-6		0.0367	[0.021-0.053] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
660	chr3	9886351	9886352	rs6788400	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	3p25.3	NR	rs6788400-G	NR	9E-6	(Hispanic)	3.86	[2.19-5.52] unit increase	Affymetrix [14000000] (imputed)	N
660	chr3	9944307	9944308	rs112623184	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		IL17RE	rs112623184-?	NR	5E-8	(female)	0.470984	[NR] unit increase	Affymetrix [NR] (imputed)	N
661	chr3	9975385	9975386	rs2270894	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRELD1	5,364 Icelandic ancestry individuals	NA	3p25.3		rs2270894-G	0.2232	4E-267		0.714367	[0.67-0.75] unit increase	Illumina [7506463] (imputed)	N
661	chr3	9975385	9975386	rs2270894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p25.3		rs2270894-G	0.533927	2E-9		0.0174957	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
661	chr3	9975385	9975386	rs2270894	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p25.3		rs2270894-G	NR	3E-62		0.0252	[0.022-0.028] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
661	chr3	9975385	9975386	rs2270894	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p25.3	IL17RC	rs2270894-C	0.7966	1E-42		0.0332	[0.028-0.038] unit increase	Affymetrix [18391927] (imputed)	N
661	chr3	9975385	9975386	rs2270894	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p25.3	CRELD1x3bIL17RC	rs2270894-?	NR	2E-24		0.031122932	[0.025-0.037] unit decrease	Illumina [27896057] (imputed)	N
661	chr3	9975385	9975386	rs2270894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p25.3		rs2270894-?	NR	3E-8				NR [~ 8900000] (imputed)	N
661	chr3	9975385	9975386	rs2270894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.3		rs2270894-?	NR	2E-80				NR [~ 8900000] (imputed)	N
661	chr3	9975385	9975386	rs2270894	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p25.3		rs2270894-?	NR	3E-9				NR [~ 8900000] (imputed)	N
661	chr3	9975385	9975386	rs2270894	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.3	NR	rs2270894-G	0.23	2E-186	(Cysteine-rich with EGF-like domain protein 1, CRELD1.7628.40.3)	0.84	[0.78-0.9] unit increase	Affymetrix [10572788] (imputed)	N
661	chr3	9981733	9981734	rs7627326	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.3	CRELD1	rs7627326-T	0.24	2E-556	(Cysteine-rich with EGF-like domain protein 1, CRELD1.7628.40.3)	1.09	[1.05-1.13] unit decrease	Affymetrix [10572788] (imputed)	N
661	chr3	10000185	10000186	rs7615408	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p25.3	CRELD1	rs7615408-A	0.73046875	2E-360	(CRELD1, 7628_40_3)	1.0087668	[0.97-1.05] unit increase	Illumina [> 1000000] (imputed)	N
661	chr3	10020523	10020524	rs55850027	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.3	NR	rs55850027-A	0.092	1E-162	(Cysteine-rich with EGF-like domain protein 1, CRELD1.7628.40.3)	1.15	[1.07-1.23] unit decrease	Affymetrix [10572788] (imputed)	N
661	chr3	10027723	10027724	rs17535749	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs17535749-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
661	chr3	10027723	10027724	rs17535749	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.3	NA	rs17535749-A	0.1081	3E-9		0.0159	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
661	chr3	10036668	10036668	rs35891157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p25.3		rs35891157-CTAT	NR	2E-20		0.0164	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
661	chr3	10038102	10038103	rs62245492	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.3	NR	rs62245492-A	0.055	1E-87	(Cysteine-rich with EGF-like domain protein 1, CRELD1.7628.40.3)	1.02	[0.92-1.12] unit decrease	Affymetrix [10572788] (imputed)	N
661	chr3	10057465	10057466	rs400301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.3		rs400301-?	NR	5E-8				NR [~ 8900000] (imputed)	N
661	chr3	10078694	10078695	rs76041173	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.3	NR	rs76041173-T	0.083	8E-149	(Cysteine-rich with EGF-like domain protein 1, CRELD1.7628.40.3)	1.24	[1.14-1.34] unit decrease	Affymetrix [10572788] (imputed)	N
662	chr3	10113247	10113248	rs775167023	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3p25.3	FANCD2	rs775167023-T	0.9919	9E-6		1.3665	[0.76-1.97] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
662	chr3	10128358	10128359	rs143915539	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.3	C3orf24	rs143915539-T	0.986	3E-6	(AA)	0.075	unit increase	Illumina [NR] (imputed)	N
662	chr3	10135576	10135577	rs1552244	24755620	Perez-Palma E	2014-04-22	PLoS One	Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.	Alzheimer's disease	2,540 European ancestry cases, 2,029 European ancestry controls	NA	3p25.3	FANCD2, FANCD2OS	rs1552244-A		2E-6		1.32	[NR]	Affymetrix, Illumina [1216213] (imputed)	N
662	chr3	10163420	10163420	rs112279447	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	3p25.3	BRK1	rs112279447-C	0.907	9E-6		0.031	[0.017-0.045] unit increase	Affymetrix [~ 10446505] (imputed)	N
662	chr3	10174835	10174836	rs62245551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p25.3		rs62245551-T	0.546298	8E-21		0.0193838	[0.015-0.023] unit decrease	Illumina [13479295] (imputed)	N
662	chr3	10174835	10174836	rs62245551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	snoU13	rs62245551-T	NR	6E-13		0.0230663	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
662	chr3	10174835	10174836	rs62245551	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p25.3	snoU13	rs62245551-T	NR	2E-10		0.0223281	[0.015-0.029] unit decrease	Affymetrix [323123] (imputed)	N
662	chr3	10183772	10183773	rs193922608	34011352	Schwarm C	2021-05-19	Orphanet J Rare Dis	Identification of two novel bullous pemphigoid- associated alleles, HLA-DQA1*05:05 and -DRB1*07:01, in Germans.	Bullous pemphigoid	438 German cases, 417 German controls	NA	3p25.3	VHL	rs193922608-?	NR	9E-38		2.81864	[2.39-3.25] unit decrease	Affymetrix [up to 386296] (imputed)	N
662	chr3	10194248	10194249	rs142728549	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	VHL	rs142728549-A	NR	2E-8		0.0324565	[0.021-0.044] unit decrease	Affymetrix [321016] (imputed)	N
663	chr3	10227979	10227980	rs114743735	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p25.3		rs114743735-G	NR	8E-15		0.0291	[0.022-0.036] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
663	chr3	10227979	10227980	rs114743735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p25.3	IRAK2	rs114743735-G	0.0592	6E-9		0.04394029	[0.029-0.059] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr3	10227979	10227980	rs114743735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p25.3	IRAK2	rs114743735-G	0.0592	6E-11		0.04926962	[0.035-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr3	10227979	10227980	rs114743735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p25.3	IRAK2	rs114743735-G	0.0593	3E-10		0.04756053	[0.033-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr3	10227979	10227980	rs114743735	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p25.3	IRAK2	rs114743735-G	0.0592	1E-10		0.04847528	[0.034-0.063] unit increase	Affymetrix [~ 2500000] (imputed)	N
663	chr3	10229159	10229160	rs115820364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p25.3	IRAK2	rs115820364-T	0.058261	9E-17		0.04018205	[0.031-0.05] unit increase	Affymetrix [93095623] (imputed)	N
663	chr3	10229159	10229160	rs115820364	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p25.3	IRAK2	rs115820364-T	0.058266	2E-14		0.036942907	[0.027-0.046] unit increase	Affymetrix [93095623] (imputed)	N
663	chr3	10229159	10229160	rs115820364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.3	NR	rs115820364-T	0.0564347	3E-24				Affymetrix, Illumina [19872809] (imputed)	N
663	chr3	10229159	10229160	rs115820364	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p25.3	NR	rs115820364-T	0.058494	1E-26		0.045311	[0.037-0.054] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
663	chr3	10229159	10229160	rs115820364	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p25.3		rs115820364-?	NR	1E-24				NR [~ 8900000] (imputed)	N
663	chr3	10233523	10233524	rs155583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p25.3	IRAK2	rs155583-T	0.565734	4E-10		0.014325989	[0.0098-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
663	chr3	10233523	10233524	rs155583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p25.3	IRAK2	rs155583-T	0.565769	4E-9		0.013455213	[0.009-0.018] unit increase	Affymetrix [93095623] (imputed)	N
663	chr3	10241564	10241565	rs71314391	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	3p25.3	NR	rs71314391-G	NR	3E-6		0.5266	NR	Illumina [at least 560000] (imputed)	N
663	chr3	10278443	10278444	rs115267786	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	NR	rs115267786-G	0.01	4E-7		15.57	[NR] unit increase	Affymetrix [7884700] (imputed)	N
663	chr3	10306930	10306931	rs2544001	33002439	Jin G	2020-10-01	Lancet Oncol	Genetic risk, incident gastric cancer, and healthy lifestyle: a meta-analysis of genome-wide association studies and prospective cohort study.	Gastric cancer	10,254 Han Chinese ancestry cases, 10,914 Han Chinese ancestry controls	NA	3p25.3	NR	rs2544001-T	0.98	5E-6		0.74	NR	Affymetrix, Illumina [6957974] (imputed)	N
663	chr3	10315102	10315103	rs164938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p25.3		rs164938-T	0.3922	1E-9		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
663	chr3	10315102	10315103	rs164938	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p25.3	Intergenic	rs164938-T	0.3922	3E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
663	chr3	10330265	10330266	rs143729751	33852427	Wittekind DA	2021-04-01	Eur J Endocrinol	Genome-wide association and transcriptome analysis suggests total serum ghrelin to be linked with GFRAL.	ghrelin levels	1,501 individuals	NA	3p25.3	GHRL	rs143729751-T	NR	3E-8		0.299	[0.19-0.4] unit decrease	Affymetrix [9868623] (imputed)	N
664	chr3	10364792	10364793	rs154239	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	3p25.3	NR	rs154239-?	NR	6E-6	(TAUTHfore)	0.184	[NR] unit decrease	Illumina [NR] (imputed)	N
664	chr3	10364792	10364793	rs154239	33635380	Kouri N	2021-02-26	Acta Neuropathol	Latent trait modeling of tau neuropathology in progressive supranuclear palsy.	Progressive supranuclear palsy	481 individuals	401 individuals	3p25.3	NR	rs154239-?	NR	3E-6	(TAUTH)	0.197	[NR] unit decrease	Illumina [NR] (imputed)	N
664	chr3	10368112	10368113	rs14154	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p25.3		rs14154-C	0.4795	5E-8	(conditional-joint)	0.0077	[0.005-0.0104] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
664	chr3	10391425	10391426	rs703912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.3		rs703912-?	NR	2E-8				NR [~ 8900000] (imputed)	N
664	chr3	10405060	10405061	rs11923545	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	NR	rs11923545-T	0.01	3E-7		15.88	[NR] unit increase	Affymetrix [7884700] (imputed)	N
664	chr3	10415342	10415343	rs9879311	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p25.3	ATP2B2, GHRL, GHRLOS, LINC00852, MIR378B, MIR885, SEC13, TATDN2	rs9879311-T		2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
664	chr3	10415342	10415343	rs9879311	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p25.3	NR	rs9879311-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
664	chr3	10427447	10427448	rs4040528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATP2B2	rs4040528-C	NR	7E-9		0.0164274	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
664	chr3	10454772	10454772	rs3836464	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Active to sedentary transition probability	88,411 European ancestry individuals	NA	3p25.3		rs3836464-CA	0.274	2E-9		0.032	unit decrease	Affymetrix [8951705] (imputed)	N
664	chr3	10484725	10484726	rs17603886	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3p25.3	ATP2B2	rs17603886-?		7E-6				Illumina [859311]	N
665	chr3	10525095	10525096	rs735931	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	3p25.3	NR	rs735931-A	0.494	1E-8		1.06983	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
665	chr3	10525095	10525096	rs735931	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3p25.3	ATP2B2	rs735931-A	0.488	9E-7		1.05844	[1.04-1.08]	NR [9372253] (imputed)	N
665	chr3	10529400	10529401	rs73024730	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p25.3	NR	rs73024730-?	NR	1E-8				Illumina [7760689] (imputed)	N
665	chr3	10534246	10534247	rs573833	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p25.3	NR	rs573833-T	0.463062	5E-9		0.0148264	[0.0098-0.0198] unit increase	Affymetrix [16585745] (imputed)	N
665	chr3	10535770	10535771	rs6807064	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	3p25.3	ATP2B2	rs6807064-?	0.29	1E-7	(phenylalanine)			Affymetrix [187454]	N
665	chr3	10544718	10544719	rs78574312	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ATP2B2	rs78574312-?	NR	3E-8	(female)	1.47926	[NR] unit decrease	Affymetrix [NR] (imputed)	N
665	chr3	10545124	10545125	rs7618363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3p25.3	NR	rs7618363-C	0.840948	1E-10		0.0116041	[0.0082-0.0151] unit increase	Affymetrix [16578495] (imputed)	N
665	chr3	10545124	10545125	rs7618363	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p25.3	NR	rs7618363-C	0.841085	1E-21		0.0370916	[0.03-0.045] unit increase	Affymetrix [16580851] (imputed)	N
665	chr3	10548949	10548950	rs4684700	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	3p25.3	NR	rs4684700-C	NR	9E-6		0.0717	[0.04-0.103] SD units increase	NR [10700000] (imputed)	N
665	chr3	10549735	10549736	rs75316710	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p25.3	ATP2B2, LINC00606	rs75316710-A	0.07	5E-7	(EA)	0.4405	[0.27-0.61] unit increase	Illumina [~ 9000000] (imputed)	N
665	chr3	10549846	10549847	rs7633661	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p25.3	NR	rs7633661-?	NR	1E-10				Affymetrix [NR]	N
665	chr3	10581379	10581380	rs6808140	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p25.3	NR	rs6808140-T	0.5053	5E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
665	chr3	10586643	10586644	rs73028974	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p25.3	NR	rs73028974-?	NR	1E-8				Illumina [7760689] (imputed)	N
665	chr3	10605047	10605048	rs6803184	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p25.3	NA	rs6803184-A	0.3402	1E-8	(Female)	1.046	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
666	chr3	10657757	10657758	rs114622784	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	NR	rs114622784-G	0.01	8E-7		18.11	[NR] unit increase	Affymetrix [7884700] (imputed)	N
667	chr3	10774758	10774759	rs1682825	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3p25.3	intergenic	rs1682825-T	NR	4E-6		0.118	[0.067-0.169] unit increase	Illumina [628922]	N
667	chr3	10804550	10804551	rs6800435	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p25.3	NR	rs6800435-A	NR	5E-7		1.08	[NR]	Illumina [7158791] (imputed)	N
667	chr3	10877610	10877611	rs1809529	22491018	Wang J	2012-04-10	Pharmacogenomics J	Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis.	Response to tocilizumab in rheumatoid arthritis	1,157 European and other ancestry rheumatoid arthritis cases	526 European and other ancestry rheumatoid arthritis cases	3p25.3	SLC6A11	rs1809529-?	0.34	3E-7	(CHAQ, RF-)	0.28	[NR] unit increase	Illumina [534053]	N
668	chr3	10885919	10885920	rs2304725	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	3p25.3	SLC6A11	rs2304725-C	0.29	3E-6	(Baseline FEV1)	0.026	[NR] unit increase	Illumina [473680]	N
668	chr3	10913737	10913738	rs17033567	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	3p25.3	SLC6A11	rs17033567-?	NR	6E-6				Affymetrix, Illumina [15642250] (imputed)	N
668	chr3	10975848	10975849	rs2272400	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Oscillospira)	541 Japanese ancestry women	NA	3p25.3	SLC6A11	rs2272400-T	0.17	4E-6		0.0349	[0.02-0.05] unit increase	Illumina [545605]	N
668	chr3	10988056	10988057	rs79198916	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	3p25.3	SLC6A11, SLC6A1	rs79198916-?		8E-6	(EA)	0.248	[0.14-0.36] unit increase	Illumina [7205781] (imputed)	N
669	chr3	11040438	11040439	rs9990174	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Conduct disorder (maternal expressed emotions interaction)	909 European ancestry trios	NA	3p25.3	SLC6A1	rs9990174-T	0.33	6E-6	(maternal warmth)	2.52	[NR] unit decrease	Perlegen [429901]	N
669	chr3	11041307	11041308	rs1568074	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p25.3	SLC6A11	rs1568074-?	NR	6E-6	(5-hydroxyindoleacetic acid)	0.1614635	[0.092-0.231] unit increase	Affymetrix [at least 2500000] (imputed)	N
669	chr3	11041605	11041606	rs1568072	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p25.3	SLC6A1	rs1568072-?		2E-13				Affymetrix, Illumina [NR] (imputed)	N
669	chr3	11045895	11045896	rs11710497	26081443	Adkins DE	2015-06-17	Twin Res Hum Genet	Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood.	Longitudinal alcohol consumption	2,126 adolescents and early adults	NA	3p25.3	SLC6A1	rs11710497-A	0.11	1E-7	(mean)	5.29	z-score decrease	Illumina [866099] (imputed)	N
669	chr3	11049328	11049329	rs1728807	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3p25.3		rs1728807-?	NR	9E-6	(serous)	1.23		Illumina [11595112] (imputed)	N
669	chr3	11075013	11075014	rs2675163	22437554	Major JM	2012-03-21	J Nutr	Genome-wide association study identifies three common variants associated with serologic response to vitamin E supplementation in men.	Response to Vitamin E supplementation	2,112 European ancestry individuals	NA	3p25.3	SLC6A1	rs2675163-C	0.23	6E-6	(change in alpha-TOH)	0.68	[0.39-0.97] unit increase	Illumina [549989]	N
669	chr3	11075460	11075461	rs2272402	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	3p25.3	SLC6A1	rs2272402-A	0.07363	1E-9	(FVC)	0.595	NR unit decrease	Affymetrix [305158]	N
669	chr3	11075460	11075461	rs2272402	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	3p25.3	SLC6A1	rs2272402-A	0.07363	1E-8	(FEV1)	0.5823	NR unit decrease	Affymetrix [305158]	N
669	chr3	11076508	11076509	rs58053962	31752434	Costa-Urrutia P	2019-11-19	Genes (Basel)	Genome-Wide Association Study of Body Mass Index and Body Fat in Mexican-Mestizo Children.	Body fat percentage	828 Mexican-Mestizo ancestry children	NA	3p25.3	SLC6A1	rs58053962-C	0.015	7E-8		0.2	NR unit increase	Affymetrix [~ 2500000] (imputed)	N
670	chr3	11196515	11196516	rs4428159	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs4428159-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
670	chr3	11217690	11217691	rs58764888	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	3p25.3	HRH1	rs58764888-A	0.02	7E-7	(European)	13.3		Illumina [7993459] (imputed)	N
670	chr3	11232778	11232779	rs4684059	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p25.3	NR	rs4684059-C	0.369267114374722	8E-6	(IGP40)	0.1691	[0.095-0.243] unit increase	Illumina [~ 2500000] (imputed)	N
670	chr3	11234716	11234717	rs346089	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	HRH1	rs346089-C	NR	6E-9		0.0215573	[0.014-0.029] unit decrease	Affymetrix [321016] (imputed)	N
670	chr3	11244119	11244120	rs35932350	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Arm total mass	2,294 White British ancestry female individuals	NA	3p25.3		rs35932350-T	NR	2E-8		0.65	kg increase	NR [6137607] (imputed)	N
670	chr3	11248956	11248957	rs347593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p25.3		rs347593-G	NR	2E-11		0.0201	[0.014-0.026] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
670	chr3	11272004	11272005	rs6442241	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p25.3	NR	rs6442241-G	0.144854	7E-9		0.0542816	[0.036-0.073] unit increase	Affymetrix [17914406] (imputed)	N
671	chr3	11278210	11278211	rs347617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.3	HRH1	rs347617-C	NR	4E-10		0.0194996	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
671	chr3	11278210	11278211	rs347617	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	HRH1	rs347617-C	NR	5E-11		0.0197285	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
671	chr3	11290121	11290122	rs347591	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p25.3	HRH1	rs347591-G		2E-6		0.269	unit decrease	Affymetrix [at least 2696785] (imputed)	N
671	chr3	11290121	11290122	rs347591	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.3	HRH1	rs347591-G		3E-13		0.289	unit decrease	Affymetrix [at least 2696785] (imputed)	N
671	chr3	11290121	11290122	rs347591	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.3	HRH1	rs347591-G		2E-10		0.169	unit decrease	Affymetrix [at least 2696785] (imputed)	N
671	chr3	11290121	11290122	rs347591	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.3	HRH1	rs347591-G		9E-6		0.108	unit decrease	Affymetrix [at least 2696785] (imputed)	N
671	chr3	11298180	11298181	rs346073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p25.3		rs346073-?	NR	1E-29				NR [~ 8900000] (imputed)	N
671	chr3	11300706	11300707	rs901865	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p25.3	HRH1	rs901865-T	0.173936	8E-28		0.0266977	[0.022-0.031] unit increase	NR [13737936] (imputed)	N
671	chr3	11302932	11302933	rs346068	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p25.3		rs346068-?	NR	6E-24		0.0256687	[0.02-0.031] unit increase	Affymetrix [20259828] (imputed)	N
671	chr3	11316142	11316143	rs2594989	25521368	Tonjes A	2014-12-18	PLoS Genet	Genome wide meta-analysis highlights the role of genetic variation in RARRES2 in the regulation of circulating serum chemerin.	Circulating chemerin levels	1,967 European ancestry individuals, 824 Sorbian (founder/genetic isolate) individuals	967 individuals	3p25.3	ATG7	rs2594989-C	NR	9E-7	(European)	0.052	[0.031-0.073] unit increase	Affymetrix [2023499] (imputed)	N
671	chr3	11325275	11325276	rs2594966	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	3p25.3	ATG7	rs2594966-A	0.6133	3E-6		1.397	[1.214-1.607]	Affymetrix [552090] (imputed)	N
671	chr3	11339959	11339960	rs2594994	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p25.3	ATG7	rs2594994-T	0.178094	3E-17		0.015449	[0.012-0.019] unit increase	Affymetrix [12370749]	N
671	chr3	11344426	11344427	rs2606761	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p25.3		rs2606761-?	NR	4E-6		0.935987	[0.91-0.96]	NR [685523]	N
671	chr3	11358721	11358722	rs17034274	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.3	NR	rs17034274-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
671	chr3	11360996	11360997	rs2594992	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p25.3	HRH1, ATG7	rs2594992-A	0.607	2E-8		0.334	[0.22-0.45] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
671	chr3	11369621	11369622	rs150038692	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ATG7	rs150038692-?	NR	3E-10	(female)	0.445297	[NR] unit increase	Affymetrix [NR] (imputed)	N
671	chr3	11378068	11378069	rs7625680	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		3p25.3	NR	rs7625680-G	NR	7E-6		1.0934352	[1.05-1.14]	Affymetrix [5734850] (imputed)	N
671	chr3	11390374	11390375	rs2084466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p25.3		rs2084466-G	NR	2E-8		0.0353	[0.023-0.048] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
671	chr3	11395820	11395821	rs2594973	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p25.3	ATG7	rs2594973-C	0.37	2E-8		5.64	z-score increase	Affymetrix [4314223] (imputed)	N
671	chr3	11400248	11400249	rs2606736	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3p25.3	HRH1, ATG7	rs2606736-T	0.6021	1E-8		0.0214	unit increase	Illumina [242296]	N
671	chr3	11400248	11400249	rs2606736	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p25.3	ATG7	rs2606736-C	0.39	5E-8		0.025	[NR] unit increase	NR [NR] (imputed)	N
672	chr3	11406720	11406721	rs2595004	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p25.3	NR	rs2595004-C	0.18	5E-11		0.016	[0.011-0.021] unit increase	Affymetrix [2446094] (imputed)	N
672	chr3	11406720	11406721	rs2595004	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p25.3	NR	rs2595004-C	0.18	5E-8				Affymetrix [2446094] (imputed)	N
672	chr3	11406720	11406721	rs2595004	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p25.3	NA	rs2595004-T	0.8253	2E-11		0.0156	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
672	chr3	11412603	11412604	rs7635838	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	3p25.3	ATG7	rs7635838-T	0.39	2E-9		0.037	[0.025-0.049] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
672	chr3	11412619	11412620	rs7624086	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.3	ATG7	rs7624086-C	0.4143	9E-25		0.2798	[0.23-0.33] mmHg decrease	Affymetrix [NR] (imputed)	N
672	chr3	11434464	11434465	rs6768611	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3p25.3	ATG7	rs6768611-G	NR	4E-11		0.0224923	[0.016-0.029] unit decrease	Affymetrix [323858] (imputed)	N
672	chr3	11435159	11435159	rs11371718	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p25.3	ATG7	rs11371718-G	NR	2E-10		0.0207051	[0.014-0.027] unit decrease	Affymetrix [323123] (imputed)	N
672	chr3	11443222	11443223	rs4684776	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	3p25.3	ATG7	rs4684776-T	0.6084	4E-6		1.383	[1.203-1.59]	Affymetrix [552090] (imputed)	N
672	chr3	11469125	11469126	rs9867963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.3	ATG7	rs9867963-C	NR	5E-12		0.0215185	[0.015-0.028] unit decrease	Affymetrix [321788] (imputed)	N
672	chr3	11469125	11469126	rs9867963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs9867963-C	NR	2E-14		0.0229919	[0.017-0.029] unit decrease	Affymetrix [321016] (imputed)	N
672	chr3	11476883	11476884	rs7632902	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.3	ATG7	rs7632902-T	NR	5E-12		0.0262734	[0.019-0.034] unit decrease	Affymetrix [321788] (imputed)	N
672	chr3	11487505	11487506	rs2454512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3p25.3	ATG7	rs2454512-T	NR	3E-9		0.0243396	[0.016-0.032] unit decrease	Affymetrix [323858] (imputed)	N
672	chr3	11508964	11508965	rs6781726	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p25.3		rs6781726-?	NR	1E-10				NR [~ 8900000] (imputed)	N
672	chr3	11509667	11509668	rs9818393	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs9818393-T	NR	8E-9		0.0166791	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
672	chr3	11513677	11513678	rs1546231	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.3	NR	rs1546231-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
672	chr3	11513677	11513678	rs1546231	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p25.3		rs1546231-?	NR	2E-10				NR [~ 8900000] (imputed)	N
672	chr3	11527941	11527942	rs4684784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs4684784-C	NR	2E-15		0.0288845	[0.022-0.036] unit decrease	Affymetrix [321016] (imputed)	N
672	chr3	11530751	11530752	rs7630417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p25.3		rs7630417-?	NR	1E-10				NR [~ 8900000] (imputed)	N
672	chr3	11530965	11530965	rs201740704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs201740704-T	NR	3E-8		0.0197006	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
673	chr3	11535416	11535417	rs904475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p25.3		rs904475-?	NR	6E-20				NR [~ 8900000] (imputed)	N
673	chr3	11541884	11541885	rs2454478	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	3p25.3	NR	rs2454478-?		1E-8				NR [520857]	N
673	chr3	11541927	11541927	rs35029874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p25.3		rs35029874-TA	NR	5E-11		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
673	chr3	11541927	11541927	rs35029874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p25.3		rs35029874-TA	NR	8E-15		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
673	chr3	11548201	11548202	rs9837162	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.3	ATG7	rs9837162-T	0.5933	2E-12		0.1388	[0.1-0.18] mmHg increase	Affymetrix [NR] (imputed)	N
673	chr3	11549595	11549596	rs2454513	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p25.3		rs2454513-?	NR	2E-7		0.930639	[0.9-0.96]	NR [685523]	N
673	chr3	11551199	11551200	rs2442795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p25.3		rs2442795-G	NR	3E-8		0.0156	[0.01-0.021] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
673	chr3	11579864	11579865	rs4684787	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs4684787-T	NR	2E-9		0.0180053	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
673	chr3	11590147	11590148	rs193172711	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	3p25.3	ATG7	rs193172711-A	0.0017	5E-6		0.989	[0.57-1.41] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
673	chr3	11590750	11590751	rs6442260	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	3p25.3	NR	rs6442260-?		5E-8				NR [11140414]	N
673	chr3	11590750	11590751	rs6442260	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3p25.3	NR	rs6442260-A	NR	5E-8		5.455	z score decrease	Affymetrix [10847151] (imputed)	N
673	chr3	11590750	11590751	rs6442260	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3p25.3	NR	rs6442260-A	0.3546	3E-6		0.0164	[0.0095-0.0233] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
673	chr3	11597086	11597087	rs4684789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.3	ATG7	rs4684789-T	NR	4E-9		0.0188217	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
673	chr3	11597086	11597087	rs4684789	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	ATG7	rs4684789-T	NR	3E-9		0.0182047	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
673	chr3	11601359	11601360	rs9848960	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.3	VGLL4	rs9848960-T	NR	1E-8		0.0214697	[0.014-0.029] unit decrease	Affymetrix [321788] (imputed)	N
673	chr3	11603228	11603229	rs7621843	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3p25.3	ATG7, HRH1, VGLL4	rs7621843-G	NR	2E-9		0.0471297	NR unit increase	NR [NR] (imputed)	N
673	chr3	11604118	11604119	rs1000010	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p25.3	VGLL4	rs1000010-G	0.351806	6E-9		0.03724189	[0.025-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
673	chr3	11608113	11608114	rs2616534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p25.3		rs2616534-?	NR	5E-14				NR [~ 8900000] (imputed)	N
673	chr3	11608113	11608114	rs2616534	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p25.3	NR	rs2616534-C	0.197468	4E-20		0.0354292	[0.028-0.043] unit increase	NR [19129689] (imputed)	N
673	chr3	11609197	11609198	rs2443728	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.3	VGLL4	rs2443728-C	NR	4E-10		0.0225158	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
673	chr3	11625201	11625202	rs6766130	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.3	VGLL4	rs6766130-T	0.08	9E-6	(conditioned on rs187941554)	5.31	[NR] unit increase	Affymetrix [7884700] (imputed)	N
673	chr3	11625413	11625414	rs6802119	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA-5-HIAA Factor score)	up to 398 European ancestry individuals	NA	3p25.3	VGLL4	rs6802119-C		8E-6		0.2221	unit decrease	Illumina [5767231] (imputed)	N
673	chr3	11625413	11625414	rs6802119	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	3p25.3	VGLL4	rs6802119-C	NR	2E-6		0.2341	unit decrease	Illumina [5767231] (imputed)	N
673	chr3	11626463	11626464	rs17609108	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.3	NA	rs17609108-T	0.8519	4E-10		0.0152	[0.01-0.02] unit decrease	NR [~ 27400000] (imputed)	N
673	chr3	11629476	11629477	rs9866470	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p25.3	NR	rs9866470-?	NR	7E-9		0.16746	[0.11-0.22] unit increase	Affymetrix [7794483] (imputed)	N
673	chr3	11630251	11630252	rs12633841	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p25.3	VGLL4	rs12633841-T	0.1778	6E-13		0.0179	[0.013-0.023] unit increase	Affymetrix [18391927] (imputed)	N
673	chr3	11633950	11633951	rs17776482	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.3	NR	rs17776482-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
673	chr3	11635630	11635631	rs9870506	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p25.3		rs9870506-A	NR	1E-11		0.0145	[0.01-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
673	chr3	11636507	11636508	rs2574727	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3p25.3	VGLL4	rs2574727-G	0.945904	3E-8		0.038502	[0.025-0.052] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
673	chr3	11640480	11640481	rs17776719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.3		rs17776719-?	NR	1E-8				NR [~ 8900000] (imputed)	N
673	chr3	11640600	11640601	rs2442776	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p25.3	VGLL4	rs2442776-G	0.15	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
673	chr3	11641534	11641535	rs6772112	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3p25.2	VGLL4	rs6772112-T	0.88	8E-8		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
673	chr3	11642113	11642114	rs1561073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p25.2		rs1561073-A	NR	2E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
673	chr3	11642113	11642114	rs1561073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p25.2		rs1561073-?	NR	1E-20				NR [~ 8900000] (imputed)	N
673	chr3	11643464	11643465	rs2276749	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	3p25.2		rs2276749-T	0.0501	3E-9		0.8603638	[0.818580869-0.904279383]	Affymetrix, Illumina [NR] (imputed)	N
673	chr3	11643464	11643465	rs2276749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.2		rs2276749-?	NR	2E-22				NR [~ 8900000] (imputed)	N
673	chr3	11649563	11649564	rs73814923	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3p25.2	VGLL4	rs73814923-?	NR	1E-6		5.27		Illumina [6778521] (imputed)	N
673	chr3	11655350	11655351	rs2443724	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3p25.2	VGLL4	rs2443724-C		2E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
673	chr3	11655380	11655381	rs2574704	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p25.2	VGLL4	rs2574704-C	0.649	5E-8	(Japanese)	0.019	[0.011-0.027] unit increase	Illumina [6108953] (imputed)	N
673	chr3	11660765	11660766	rs2437689	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p25.2		rs2437689-?	NR	8E-16				NR [~ 8900000] (imputed)	N
673	chr3	11662291	11662292	rs2443723	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3p25.2	VGLL4	rs2443723-?	NR	1E-8		1.0651897	NR	Affymetrix [9154080] (imputed)	N
673	chr3	11664548	11664549	rs2616554	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth with premature rupture of membranes	133 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3p25.2	VGLL4	rs2616554-?	NR	4E-6		1.95		Illumina [6778521] (imputed)	N
674	chr3	11665482	11665483	rs62245779	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	3p25.2	NR	rs62245779-?	NR	5E-6		0.1707	[0.096-0.245] unit increase	Illumina [at least 560000] (imputed)	N
674	chr3	11675788	11675789	rs6782029	21079607	Wang K	2010-11-16	Mol Psychiatry	A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.	Anorexia nervosa	1,033 European ancestry cases, 3,733 European ancestry controls	NA	3p25.2	VGLL4	rs6782029-?	0.24	9E-6				Illumina [~ 598000]	N
674	chr3	11677822	11677823	rs2443718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p25.2		rs2443718-C	0.90674	2E-9		0.0208583	[0.014-0.028] unit increase	Illumina [13479295] (imputed)	N
674	chr3	11677822	11677823	rs2443718	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p25.2	VGLL4	rs2443718-?	NR	1E-13		0.03640609	[0.027-0.046] unit increase	Illumina [27896057] (imputed)	N
674	chr3	11694466	11694467	rs4684792	24068947	Brandler WM	2013-09-12	PLoS Genet	Common variants in left/right asymmetry genes and pathways are associated with relative hand skill.	Relative hand skill in reading disability	728 European ancestry individuals with reading disability	NA	3p25.2	VGLL4, ATG7	rs4684792-?	0.18	9E-6		0.28	[0.16-0.4] unit decrease	Illumina [2095209]	N
674	chr3	11701733	11701734	rs1547456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	VGLL4	rs1547456-G	NR	2E-9		0.0179634	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
674	chr3	11704884	11704885	rs4444693	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	3p25.2	NR	rs4444693-T		2E-6		0.0881	[0.052-0.124] SD units decrease	NR [10700000] (imputed)	N
674	chr3	11706649	11706650	rs4432623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	3p25.2	NR	rs4432623-G		9E-6		0.097	[0.054-0.14] SD units increase	NR [10700000] (imputed)	N
674	chr3	11791616	11791617	rs147119990	28207573	Backman JD	2017-04-01	Pharmacogenet Genomics	Genome-wide analysis of clopidogrel active metabolite levels identifies novel variants that influence antiplatelet response.	Clopidogrel active metabolite levels	513 Amish individuals	NA	3p25.2	NR	rs147119990-A	0.01	2E-9		20.21	[NR] unit increase	Affymetrix [7884700] (imputed)	N
675	chr3	11871214	11871215	rs11551661	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	3p25.2		rs11551661-C	NR	1E-6		0.1119	[0.067-0.157] unit decrease	NR [4841651] (imputed)	N
675	chr3	11887992	11887993	rs144232229	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Herpes simplex virus 2 mgG-1 antibody levels	1,382 White British ancestry individuals	NA	3p25.2	TAMM41	rs144232229-G	0.989	2E-9		1.0	[0.67-1.33] unit decrease	NR [25472218] (imputed)	N
675	chr3	11910634	11910635	rs142823282	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Microalbuminuria in type 1 diabetes	2,447 European ancestry cases, 12,113 European ancestry controls	NA	3p25.2	TAMM41	rs142823282-G	0.011	8E-10		6.73	[NR]	Illumina [up to 49000000] (imputed)	N
676	chr3	11950778	11950779	rs111668452	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Mean area of carotid plaque	727 European ancestry men, 550 European ancestry women	NA	3p25.2	NR	rs111668452-A	0.0273673	8E-7		0.330921	[0.2-0.46] mm2 decrease	Affymetrix [532676] (imputed)	N
676	chr3	11950778	11950779	rs111668452	32469969	Pott J	2020-05-29	PLoS One	Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men.	Carotid plaque maximum area	727 European ancestry men, 550 European ancestry women	NA	3p25.2	NR	rs111668452-A	0.0273673	8E-7		0.420151	[0.25-0.59] mm2 decrease	Affymetrix [532676] (imputed)	N
676	chr3	11956597	11956598	rs6777876	21314694	Kendler KS	2011-02-11	Alcohol Clin Exp Res	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Alcohol dependence	2,357 European ancestry individuals, 812 African American individuals	NA	3p25.2	C3orf31	rs6777876-G	0.086	4E-7	(AA)			Affymetrix [NR]	N
676	chr3	12004939	12004940	rs2600258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	RN7SL147P	rs2600258-A	NR	2E-8		0.019275	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
676	chr3	12004939	12004940	rs2600258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	RN7SL147P	rs2600258-A	NR	6E-9		0.0201074	[0.013-0.027] unit increase	Affymetrix [319769] (imputed)	N
676	chr3	12025145	12025146	rs4684092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs4684092-G	NR	1E-10		0.0257803	[0.018-0.034] unit increase	Affymetrix [319769] (imputed)	N
676	chr3	12025145	12025146	rs4684092	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs4684092-G	NR	3E-11		0.0264734	[0.019-0.034] unit increase	Affymetrix [319769] (imputed)	N
676	chr3	12031718	12031719	rs4684833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p25.2		rs4684833-?	NR	2E-10				NR [~ 8900000] (imputed)	N
676	chr3	12031718	12031719	rs4684833	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p25.2	NR	rs4684833-C	NR	5E-8		0.01563	[0.01-0.021] unit increase	Affymetrix [10847151] (imputed)	N
676	chr3	12056754	12056755	rs9310398	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	3p25.2	NR	rs9310398-?	NR	9E-6				Illumina [8270200] (imputed)	N
677	chr3	12059924	12059925	rs307616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs307616-G	NR	4E-9		0.0471488	[0.032-0.063] unit decrease	Affymetrix [319769] (imputed)	N
677	chr3	12059924	12059925	rs307616	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs307616-G	NR	3E-9		0.0474662	[0.032-0.063] unit decrease	Affymetrix [319769] (imputed)	N
677	chr3	12060483	12060484	rs17612444	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p25.2	SYN2	rs17612444-A	0.951681	4E-9		0.0255479	[0.017-0.034] unit decrease	NR [13737936] (imputed)	N
677	chr3	12075116	12075117	rs394945	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p25.2	TIMP4	rs394945-C	0.83078125	2E-33	(TIMP4, 6462_12_3)	0.37893507	[0.32-0.44] unit increase	Illumina [> 1000000] (imputed)	N
677	chr3	12077009	12077010	rs454615	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.2	TIMP4	rs454615-C	0.831	2E-53	(Metalloproteinase inhibitor 4, TIMP4.6462.12.3)	0.49	[0.43-0.55] unit increase	Affymetrix [10572788] (imputed)	N
677	chr3	12095129	12095130	rs307558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3p25.2		rs307558-A	NR	8E-9		0.0688	[0.045-0.092] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
677	chr3	12095129	12095130	rs307558	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	3p25.2	SYN2	rs307558-?	NR	1E-9		0.02652	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
677	chr3	12095129	12095130	rs307558	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	3p25.2	SYN2	rs307558-?	NR	7E-10		0.02628	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
677	chr3	12097668	12097669	rs12629034	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p25.2	NR	rs12629034-T	0.153	7E-23	(Metalloproteinase inhibitor 4, TIMP4.6462.12.3)	0.36	[0.28-0.44] unit increase	Affymetrix [10572788] (imputed)	N
677	chr3	12102272	12102273	rs307598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	3p25.2		rs307598-C	0.764231	6E-10		0.0207197	[0.014-0.027] unit decrease	Illumina [13478778] (imputed)	N
677	chr3	12106684	12106685	rs112517560	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	3p25.2	SYN2	rs112517560-G	0.012	3E-8		5.32	[2.95-9.60]	Illumina [3905175] (imputed)	N
677	chr3	12110246	12110247	rs307586	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs307586-C	NR	5E-11		0.0301651	[0.021-0.039] unit decrease	Affymetrix [321788] (imputed)	N
677	chr3	12112009	12112010	rs598747	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs598747-?	NR	4E-9		0.00762052	[0.0051-0.0102] unit increase	NR [NR]	N
677	chr3	12112009	12112010	rs598747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2, ACTG1P12	rs598747-G	NR	3E-9		0.0236617	[0.016-0.031] unit decrease	Affymetrix [321016] (imputed)	N
677	chr3	12116619	12116620	rs308971	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p25.2	SYN2	rs308971-A	0.8685	2E-7		1.057E-7	[-0.00154-0.00154] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
677	chr3	12126876	12126877	rs2648351	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs2648351-A	NR	5E-16		0.0359733	[0.027-0.045] unit increase	Affymetrix [319769] (imputed)	N
677	chr3	12126876	12126877	rs2648351	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs2648351-A	NR	4E-16		0.0361173	[0.027-0.045] unit increase	Affymetrix [319769] (imputed)	N
677	chr3	12127826	12127827	rs307575	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Galanin peptide levels	21,758 European ancestry individuals	9,173 individuals	3p25.2		rs307575-A	0.24	4E-21		0.1129	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
677	chr3	12134739	12134740	rs184262	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP4	5,368 Icelandic ancestry individuals	NA	3p25.2		rs184262-A	0.1675	6E-48		0.35003	[0.3-0.4] unit decrease	Illumina [7506463] (imputed)	N
677	chr3	12139091	12139092	rs6798755	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p25.2	TIMP4	rs6798755-C	0.934471	2E-10		0.0254837	[0.018-0.033] unit increase	Affymetrix [NR] (imputed)	N
677	chr3	12155887	12155888	rs11707641	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p25.2	SYN2	rs11707641-T	0.84	3E-6	(conditional on rs2442776)	1.07	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
677	chr3	12156137	12156138	rs116286676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	SYN2	rs116286676-C	NR	9E-11		0.0587083	[0.041-0.076] unit decrease	Affymetrix [321114] (imputed)	N
677	chr3	12156137	12156138	rs116286676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	SYN2	rs116286676-C	NR	5E-10		0.0564797	[0.039-0.074] unit decrease	Affymetrix [321169] (imputed)	N
677	chr3	12164711	12164712	rs450277	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p25.2	NR	rs450277-?	NR	7E-10				Affymetrix [NR]	N
677	chr3	12173654	12173655	rs34831171	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p25.2	SYN2	rs34831171-T	0.7997	7E-11		0.0246	[0.017-0.032] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
677	chr3	12184556	12184557	rs7621569	32341051	Wang X	2020-04-01	BMJ Open Diabetes Res Care	Shared genetic architecture and casual relationship between leptin levels and type 2 diabetes: large-scale cross-trait meta-analysis and Mendelian randomization analysis.	Circulating leptin levels or type 2 diabetes	254,263 individuals	NA	3p25.2	SYN2	rs7621569-?	NR	2E-8				NR [NR]	N
678	chr3	12189967	12189968	rs3773364	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	3p25.2	NR	rs3773364-G	0.1574	1E-11		1.12	[1.08-1.15]	Affymetrix, Illumina [7072771] (imputed)	N
678	chr3	12189967	12189968	rs3773364	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIMP4	5,368 Icelandic ancestry individuals	NA	3p25.2		rs3773364-G	0.1947	4E-33		0.272425	[0.23-0.32] unit increase	Illumina [7506463] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	7E-12		0.105194	[0.075-0.135] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	1E-8		0.0851654	[0.056-0.114] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	2E-8		0.09109	[0.059-0.123] unit decrease	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	9E-14		0.122799	[0.091-0.155] unit decrease	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	5E-11		0.100676	[0.071-0.131] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982798	1E-10		0.0968038	[0.067-0.126] unit decrease	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	2E-9		0.0897512	[0.06-0.119] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	4E-10		0.0934254	[0.064-0.123] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	5E-11		0.106585	[0.075-0.138] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	4E-13		0.111025	[0.081-0.141] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	1E-10		0.097305	[0.068-0.127] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	9E-13		0.114427	[0.083-0.146] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	1E-12		0.109755	[0.08-0.14] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	2E-10		0.0959121	[0.066-0.125] unit increase	NR [11722792] (imputed)	N
678	chr3	12206488	12206489	rs11922042	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	3p25.2		rs11922042-T	0.982793	1E-8		0.086613	[0.057-0.116] unit increase	NR [11722792] (imputed)	N
678	chr3	12208670	12208671	rs795009	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p25.2	SYN2	rs795009-T	0.7306	2E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
678	chr3	12227818	12227819	rs62240442	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs62240442-A	NR	4E-13		0.0404362	[0.03-0.051] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12227818	12227819	rs62240442	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs62240442-A	NR	2E-13		0.0409632	[0.03-0.052] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12227818	12227819	rs62240442	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs62240442-A	NR	6E-11		0.0379259	[0.027-0.049] unit decrease	Affymetrix [321788] (imputed)	N
678	chr3	12230703	12230704	rs310763	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p25.2	NR	rs310763-C	0.784417071831519	3E-8		0.0062105684	[0.004-0.0084] unit decrease	NR [NR]	N
678	chr3	12230703	12230704	rs310763	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p25.2	NR	rs310763-C	0.784417071831519	3E-8		0.007597797	[0.0049-0.0103] unit decrease	NR [NR]	N
678	chr3	12230703	12230704	rs310763	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p25.2	NR	rs310763-C	0.784417071831519	3E-8		0.009892154	[0.0064-0.0134] unit decrease	NR [NR]	N
678	chr3	12230703	12230704	rs310763	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p25.2	NR	rs310763-C	0.784417071831519	3E-8		0.006332982	[0.0041-0.0086] unit decrease	NR [NR]	N
678	chr3	12230703	12230704	rs310763	25743335	Taylor PN	2015-03-06	Nat Commun	Whole-genome sequence-based analysis of thyroid function.	Thyroid stimulating hormone levels	2,287 European ancestry whole-genome sequenced individuals, 14,048 European ancestry individuals	NA	3p25.2	SYN2	rs310763-T	0.235	6E-9		0.083	[0.056-0.11] unit increase	Illumina [at least 9558836] (imputed)	N
678	chr3	12231233	12231234	rs7619280	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	3p25.2	NR	rs7619280-G	0.793299	7E-13		0.032863	[0.024-0.042] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
678	chr3	12235722	12235723	rs56395424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p25.2	SYN2	rs56395424-A	0.316129	3E-15		0.020634351	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12239851	12239852	rs1663070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs1663070-C	NR	8E-10		0.0199805	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12239851	12239852	rs1663070	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs1663070-C	NR	9E-10		0.019936	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12239930	12239931	rs13098031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3p25.2		rs13098031-T	NR	3E-20		0.0239	[0.019-0.029] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
678	chr3	12239930	12239931	rs13098031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3p25.2		rs13098031-T	NR	1E-14		0.0204	[0.015-0.025] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
678	chr3	12239930	12239931	rs13098031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs13098031-T	NR	8E-12		0.0226451	[0.016-0.029] unit increase	Affymetrix [321788] (imputed)	N
678	chr3	12239930	12239931	rs13098031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs13098031-T	NR	8E-10		0.0195501	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
678	chr3	12247343	12247343	rs143702978	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p25.2		rs143702978-ATATAAGAATTCC	0.114008	3E-15		0.028575713	[0.021-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12251423	12251424	rs310755	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	3p25.2	SYN2, PPARG	rs310755-A	0.751883910048873	1E-25		0.0553	[0.045-0.066] SD decrease	Illumina [22400000] (imputed)	N
678	chr3	12255389	12255390	rs73017308	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Diabetic kidney disease in type 2 diabetes (ESRD vs. no ESRD)	371 European ancestry cases with end-stage renal disease, 4,471 European ancestry cases without end-stage renal disease	1,640 European ancestry cases with end-stage renal disease, 7,803 European ancestry cases without end-stage renal disease, 877 Asian cases with end-stage renal disease, 4,510 Asian cases without end-stage renal disease, 20 Chinese ancestry cases with end-stage renal disease, 398 Chinese ancestry cases without end-stage renal disease	3p25.2	NR	rs73017308-?		7E-6	(EA)	1.58	[1.05-2.38]	Affymetrix, Illumina [up to 9343778] (imputed)	N
678	chr3	12259055	12259056	rs376467194	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p25.2	SYN2	rs376467194-A	0.0019	5E-6		0.5334	[0.3-0.76] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
678	chr3	12259088	12259089	rs13089989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs13089989-A	NR	3E-8		0.0183911	[0.012-0.025] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12259544	12259545	rs310747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	SYN2	rs310747-T	NR	6E-12		0.02008	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12259544	12259545	rs310747	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	SYN2	rs310747-T	NR	2E-12		0.0205436	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12264122	12264123	rs11301391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3p25.2		rs11301391-C	0.39412	2E-27		0.0241625	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
678	chr3	12264122	12264123	rs11301391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.2		rs11301391-C	0.394132	1E-15		0.018505845	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12266803	12266804	rs1822534	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3p25.2		rs1822534-A	0.608	1E-9				Affymetrix [10369434] (imputed)	N
678	chr3	12266803	12266804	rs1822534	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p25.2		rs1822534-A	0.608	1E-20				Affymetrix [10369434] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p25.2	NR	rs1822534-G	0.392154	3E-36		0.0284529	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p25.2	NR	rs1822534-G	0.394237	8E-43		0.025822	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs1822534-G	0.34611	1E-58				Affymetrix, Illumina [23467995] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p25.2	NR	rs1822534-G	0.394011	5E-59		0.030979	[0.027-0.035] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p25.2	NR	rs1822534-G	0.393993	7E-71		0.034408	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
678	chr3	12266803	12266804	rs1822534	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs1822534-G	0.34494	2E-9				Affymetrix, Illumina [19905671] (imputed)	N
678	chr3	12266803	12266804	rs1822534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs1822534-?	NR	3E-20				Affymetrix [~ 8270000] (imputed)	N
678	chr3	12266803	12266804	rs1822534	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs1822534-?	NR	7E-11				Affymetrix [~ 8270000] (imputed)	N
678	chr3	12266803	12266804	rs1822534	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p25.2		rs1822534-?	NR	6E-32				NR [~ 8900000] (imputed)	N
678	chr3	12266803	12266804	rs1822534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3p25.2	intergenic	rs1822534-G	0.394	1E-12		0.02614186	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12266803	12266804	rs1822534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3p25.2	intergenic	rs1822534-G	0.3941	2E-33		0.04510142	[0.038-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12266803	12266804	rs1822534	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p25.2	intergenic	rs1822534-G	0.3941	4E-24		0.03730153	[0.03-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12266854	12266855	rs1584063	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs1584063-?	NR	4E-10		0.00571137	[0.0039-0.0075] unit increase	NR [NR]	N
678	chr3	12266854	12266855	rs1584063	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p25.2		rs1584063-A	0.456363	5E-45		0.03122586	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3p25.2	SYN2, PPARG	rs1584063-A	NR	4E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3p25.2	SYN2, PPARG	rs1584063-A	NR	1E-13				Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3p25.2	SYN2, PPARG	rs1584063-A	NR	8E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3p25.2	SYN2, PPARG	rs1584063-A	NR	7E-14				Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3p25.2	SYN2, PPARG	rs1584063-A	NR	2E-9		0.883	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	3p25.2	SYN2, PPARG	rs1584063-A	NR	5E-10		1.056	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12266854	12266855	rs1584063	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	3p25.2	SYN2, PPARG	rs1584063-A	NR	2E-6	(EA)	1.116	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
678	chr3	12267503	12267504	rs7638232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p25.2		rs7638232-A	NR	1E-14		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
678	chr3	12267647	12267648	rs7616006	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p25.2		rs7616006-?	NR	1E-13		0.014717	[0.011-0.019] unit decrease	Affymetrix [20259828] (imputed)	N
678	chr3	12267647	12267648	rs7616006	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	3p25.2	SYN2	rs7616006-A	0.5744	5E-10		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
678	chr3	12267647	12267648	rs7616006	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	3p25.2	RAF1	rs7616006-A	0.555	1E-18	(Trans-ethnic initial)	0.0315	[0.024-0.039] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
678	chr3	12267647	12267648	rs7616006	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	3p25.2	SYN2	rs7616006-A	NR	5E-8		1.997	[1.28-2.71] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
678	chr3	12267779	12267780	rs7650082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p25.2	intergenic	rs7650082-G	0.4216	6E-20		0.03296532	[0.026-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12268026	12268027	rs7650294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p25.2		rs7650294-C	NR	7E-53		0.0299	[0.026-0.034] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
678	chr3	12268026	12268027	rs7650294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3p25.2		rs7650294-C	NR	9E-13		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
678	chr3	12268026	12268027	rs7650294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p25.2		rs7650294-C	NR	8E-39		0.0279	[0.024-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
678	chr3	12268026	12268027	rs7650294	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs7650294-T	0.575859	7E-21				Affymetrix, Illumina [22063850] (imputed)	N
678	chr3	12268190	12268191	rs9810259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs9810259-G	0.404057	3E-96				Affymetrix, Illumina [24588908] (imputed)	N
678	chr3	12268190	12268191	rs9810259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs9810259-G	0.406136	3E-25				Affymetrix, Illumina [24246363] (imputed)	N
678	chr3	12268190	12268191	rs9810259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p25.2	NR	rs9810259-G	0.422467	2E-26		0.019479	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
678	chr3	12268190	12268191	rs9810259	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p25.2	intergenic	rs9810259-G	0.4213	1E-28		0.04092605	[0.034-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12268243	12268244	rs12491937	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	3p25.2	PPARG	rs12491937-?	NR	3E-20		0.0648	NR L increase	Affymetrix [9390170] (imputed)	N
678	chr3	12268243	12268244	rs12491937	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3p25.2	SYN2	rs12491937-A	0.5846	1E-13		0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
678	chr3	12268243	12268244	rs12491937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p25.2		rs12491937-G	0.419239	5E-73		0.041280486	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12268243	12268244	rs12491937	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p25.2		rs12491937-G	0.419243	8E-59		0.036612168	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12268243	12268244	rs12491937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p25.2	NR	rs12491937-G	0.422152	4E-87		0.036477	[0.033-0.04] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
678	chr3	12268243	12268244	rs12491937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs12491937-G	0.401649	6E-30				Affymetrix, Illumina [21126107] (imputed)	N
678	chr3	12268243	12268244	rs12491937	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3p25.2	NR	rs12491937-G	0.419975	1E-28		0.022519	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
678	chr3	12268243	12268244	rs12491937	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3p25.2	intergenic	rs12491937-G	0.4209	8E-12		0.02394897	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12268570	12268570	rs11438979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p25.2		rs11438979-AG	NR	2E-29		0.0265	[0.022-0.031] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
678	chr3	12268570	12268570	rs11438979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p25.2		rs11438979-AG	NR	1E-58		0.0377	[0.033-0.042] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
678	chr3	12268603	12268604	rs7641325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p25.2		rs7641325-A	NR	4E-27		0.0217	[0.018-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
678	chr3	12268603	12268604	rs7641325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3p25.2		rs7641325-A	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
678	chr3	12268603	12268604	rs7641325	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p25.2		rs7641325-G	0.58	1E-25				Affymetrix [10369434] (imputed)	N
678	chr3	12268603	12268604	rs7641325	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3p25.2		rs7641325-G	0.58	6E-11				Affymetrix [10369434] (imputed)	N
678	chr3	12268603	12268604	rs7641325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs7641325-A	0.402435	2E-45				Affymetrix, Illumina [24649327] (imputed)	N
678	chr3	12268603	12268604	rs7641325	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3p25.2	NR	rs7641325-A	0.420558	4E-10		0.012994	[0.0089-0.0171] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
678	chr3	12268603	12268604	rs7641325	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p25.2	intergenic	rs7641325-A	0.4591	1E-17		0.0225	[0.017-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
678	chr3	12269265	12269266	rs13066322	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p25.2		rs13066322-C	0.583	2E-23				Affymetrix [10369434] (imputed)	N
678	chr3	12269265	12269266	rs13066322	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p25.2		rs13066322-T	0.417168	1E-37		0.028940775	[0.025-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12269265	12269266	rs13066322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs13066322-T	0.40681	1E-71				Affymetrix, Illumina [23472807] (imputed)	N
678	chr3	12270660	12270661	rs6779488	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	3p25.2	SYN2, PPARG	rs6779488-?	NR	1E-9		0.03158	[0.021-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
678	chr3	12271918	12271918	rs11456863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	3p25.2		rs11456863-AT	0.236186	6E-12		0.0267543	[0.019-0.034] unit decrease	Illumina [13478928] (imputed)	N
678	chr3	12271918	12271918	rs11456863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11456863-AT	NR	4E-12		0.0205237	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12271918	12271918	rs11456863	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11456863-AT	NR	8E-13		0.0211928	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12271918	12271918	rs11456863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p25.2		rs11456863-AT	0.350834	5E-16		0.019353328	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12271918	12271918	rs11456863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p25.2		rs11456863-AT	0.350773	9E-14		0.017585425	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12271918	12271918	rs11456863	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p25.2		rs11456863-AT	0.350792	8E-19		0.0219208	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12271918	12271918	rs11456863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p25.2	NR	rs11456863-I	0.351098	4E-26		0.022698	[0.018-0.027] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
678	chr3	12271918	12271918	rs11456863	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p25.2	intergenic	rs11456863-?	0.6097	1E-14		0.0211	[0.016-0.026] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
678	chr3	12271918	12271918	rs11456863	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3p25.2	NR	rs11456863-AT	NR	7E-9		0.0235998	[0.015-0.032] unit decrease	Affymetrix [16832071] (imputed)	N
678	chr3	12271928	12271928	rs398051584	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3p25.2	intergenic	rs398051584-AT	0.3516	9E-11		0.02406503	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12273673	12273674	rs310750	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs310750-T	NR	2E-8		0.0259078	[0.017-0.035] unit decrease	Affymetrix [321016] (imputed)	N
678	chr3	12273767	12273768	rs310749	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Total body bone mineral density (MTAG)	at least 66,628 individuals	NA	3p25.2	NR	rs310749-G	0.52	5E-9		0.03	[0.02-0.04] unit increase	NR [9704453]	N
678	chr3	12273767	12273768	rs310749	30690781	Pei YF	2019-02-28	J Bone Miner Res	Joint Association Analysis Identified 18 New Loci for Bone Mineral Density.	Heel bone mineral density (MTAG)	at least 142,487 individuals	NA	3p25.2	NR	rs310749-G	0.52	3E-8		0.02	[0.012-0.028] unit increase	NR [9704453]	N
678	chr3	12275285	12275286	rs13070844	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p25.2	intergenic	rs13070844-A	0.3419	2E-16		0.03091256	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12276492	12276493	rs11709119	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3p25.2	PPARG	rs11709119-?		5E-10				Illumina [5041948] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	3E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	6E-12		0.0361	[0.026-0.046] unit increase	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	3E-12		0.0363	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	2E-21		0.0498	[0.04-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	3E-10		0.0314	[0.022-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	1E-9		0.0317	[0.022-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	1E-18		0.044	[0.034-0.054] unit increase	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3p25.2	NR	rs17036101-A	NR	3E-19		0.0449	[0.035-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
678	chr3	12277844	12277845	rs17036101	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3p25.2	SYN2, PPARG	rs17036101-G	0.93	2E-7		1.15	[1.10-1.21]	Affymetrix, Illumina [2202892] (imputed)	N
678	chr3	12281663	12281664	rs2439737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p25.2	NR	rs2439737-T	0.497761	4E-18		0.01945192	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12281663	12281664	rs2439737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p25.2	NR	rs2439737-T	0.497756	4E-18		0.019471671	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12281663	12281664	rs2439737	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p25.2		rs2439737-T	0.497838	8E-12		0.015266374	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12287862	12287863	rs17036126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs17036126-T	NR	6E-10		0.0257184	[0.018-0.034] unit decrease	Affymetrix [321016] (imputed)	N
678	chr3	12288568	12288569	rs9823123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p25.2		rs9823123-?	NR	3E-14				NR [~ 8900000] (imputed)	N
678	chr3	12289448	12289449	rs9310400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs9310400-T	NR	2E-13		0.0231105	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
678	chr3	12289448	12289449	rs9310400	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	3p25.2	intergenic	rs9310400-T	0.3285	1E-12		0.02715901	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
678	chr3	12289799	12289800	rs13081389	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	3p25.2	PPARG	rs13081389-A		2E-7		1.24	[1.15-1.35]	Affymetrix, Illumina [2426886] (imputed)	N
678	chr3	12291416	12291417	rs6804173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs6804173-C	NR	1E-22		0.0394131	[0.032-0.047] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12291416	12291417	rs6804173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs6804173-C	NR	9E-23		0.0394603	[0.032-0.047] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12291416	12291417	rs6804173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs6804173-C	NR	1E-11		0.0275271	[0.02-0.035] unit increase	Affymetrix [321114] (imputed)	N
678	chr3	12291416	12291417	rs6804173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs6804173-C	NR	7E-12		0.0278684	[0.02-0.036] unit increase	Affymetrix [321169] (imputed)	N
678	chr3	12291416	12291417	rs6804173	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs6804173-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
678	chr3	12294201	12294202	rs9826367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs9826367-G	NR	8E-15		0.0228223	[0.017-0.029] unit increase	Affymetrix [321788] (imputed)	N
678	chr3	12294201	12294202	rs9826367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p25.2		rs9826367-G	0.449092	3E-19		0.019973375	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
678	chr3	12294201	12294202	rs9826367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p25.2		rs9826367-G	0.449083	3E-13		0.016244827	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12294201	12294202	rs9826367	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p25.2		rs9826367-G	0.449106	4E-56		0.035015754	[0.031-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
678	chr3	12296468	12296469	rs9875338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs9875338-A	NR	3E-16		0.023488	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12296468	12296469	rs9875338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs9875338-A	NR	1E-16		0.0238095	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12296468	12296469	rs9875338	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs9875338-A	NR	2E-10		0.0183054	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
678	chr3	12296750	12296751	rs7631359	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs7631359-T	NR	7E-13		0.0299084	[0.022-0.038] unit decrease	Affymetrix [321788] (imputed)	N
678	chr3	12297988	12297989	rs13078017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs13078017-C	NR	5E-21		0.0273496	[0.022-0.033] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12297988	12297989	rs13078017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs13078017-C	NR	4E-22		0.0281195	[0.022-0.034] unit decrease	Affymetrix [319769] (imputed)	N
678	chr3	12297988	12297989	rs13078017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs13078017-C	NR	2E-12		0.0205547	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
678	chr3	12297988	12297989	rs13078017	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs13078017-C	NR	1E-10		0.0188622	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
678	chr3	12302032	12302033	rs11128593	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11128593-C	NR	8E-11		0.0233241	[0.016-0.03] unit increase	Affymetrix [321114] (imputed)	N
678	chr3	12302207	12302208	rs62242087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs62242087-T	NR	7E-13		0.0384343	[0.028-0.049] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12302207	12302208	rs62242087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs62242087-T	NR	4E-13		0.0389114	[0.028-0.049] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12302207	12302208	rs62242087	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs62242087-T	NR	1E-9		0.0338328	[0.023-0.045] unit decrease	Affymetrix [321788] (imputed)	N
678	chr3	12302461	12302462	rs9878908	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3p25.2	NR	rs9878908-C	0.201	1E-11		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
678	chr3	12302461	12302462	rs9878908	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p25.2	NA	rs9878908-T	0.8126	3E-20		0.0193	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
678	chr3	12303416	12303417	rs11128594	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	3p25.2		rs11128594-A	0.80636	1E-11		0.0351407	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
678	chr3	12303709	12303710	rs11128595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11128595-G	NR	8E-17		0.029687	[0.023-0.037] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12303709	12303710	rs11128595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11128595-G	NR	3E-17		0.0300639	[0.023-0.037] unit increase	Affymetrix [319769] (imputed)	N
678	chr3	12303709	12303710	rs11128595	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	GSTM5P1	rs11128595-G	NR	2E-10		0.0229178	[0.016-0.03] unit increase	Affymetrix [321169] (imputed)	N
678	chr3	12305915	12305916	rs34509786	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3p25.2		rs34509786-?	NR	9E-14				NR [~ 8900000] (imputed)	N
678	chr3	12310505	12310506	rs139702234	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	3p25.2	NR	rs139702234-A	0.02	5E-7		0.023	[0.013-0.033] unit increase	Affymetrix [NR] (imputed)	N
678	chr3	12310772	12310773	rs145268310	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3p25.2	PPARG	rs145268310-C	0.121225	2E-13		0.10230522	[0.075-0.13] unit increase	Affymetrix [7288503] (imputed)	N
678	chr3	12310772	12310773	rs145268310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3p25.2		rs145268310-?	NR	1E-10				NR [~ 8900000] (imputed)	N
678	chr3	12313845	12313846	rs6807915	27976721	Wang Z	2016-12-15	Nat Commun	A large-scale genome-wide association and meta-analysis identified four novel susceptibility loci for leprosy.	Leprosy	2,743 Chinese ancestry cases, 3,573 Chinese ancestry controls	5,413 Han Chinese ancestry cases, 12,037 Han Chinese ancestry controls	3p25.2	SYN2	rs6807915-T	0.5	2E-8		1.1235955		Illumina [5546030] (imputed)	N
678	chr3	12315296	12315297	rs2347101	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3p25.2		rs2347101-A	NR	7E-13		0.1001	[0.073-0.127] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
678	chr3	12315762	12315763	rs115381724	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs115381724-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
678	chr3	12315762	12315763	rs115381724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p25.2		rs115381724-?	NR	2E-8				NR [~ 8900000] (imputed)	N
678	chr3	12316338	12316339	rs2972166	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p25.2	PPARG	rs2972166-G	0.725341	1E-11		0.014956	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
678	chr3	12317739	12317752	rs151229409	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	3p25.2	NR	rs151229409-G	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
678	chr3	12319057	12319058	rs2920499	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2920499-G	NR	2E-10		0.018797	[0.013-0.025] unit decrease	Affymetrix [321788] (imputed)	N
678	chr3	12319715	12319716	rs62242118	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs62242118-G	NR	2E-13		0.0366906	[0.027-0.046] unit decrease	Affymetrix [321788] (imputed)	N
679	chr3	12322167	12322168	rs13066537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs13066537-C	NR	3E-12		0.0218951	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12322167	12322168	rs13066537	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs13066537-C	NR	2E-12		0.0221603	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12323412	12323413	rs2920500	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2920500-G	NR	6E-11		0.0186988	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
679	chr3	12324229	12324230	rs2920503	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p25.2	PPARG	rs2920503-C	NR	3E-8		0.00777731	[0.005-0.0105] unit decrease	Affymetrix [10061374] (imputed)	N
679	chr3	12324229	12324230	rs2920503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.2		rs2920503-?	NR	3E-11				NR [~ 8900000] (imputed)	N
679	chr3	12324229	12324230	rs2920503	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	LDL cholesterol	up 62,166 European ancestry individuals	NA	3p25.2	PPARG	rs2920503-T	0.3	3E-10		0.041	[0.027-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
679	chr3	12327430	12327431	rs13076933	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	3p25.2		rs13076933-T	0.740347	4E-8		0.0254044	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
679	chr3	12327430	12327431	rs13076933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs13076933-G	NR	2E-16		0.0265702	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12327430	12327431	rs13076933	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs13076933-G	NR	9E-17		0.0268523	[0.021-0.033] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12327430	12327431	rs13076933	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3p25.2	NR	rs13076933-T	0.740546	8E-49		0.0322061	[0.028-0.037] unit increase	Affymetrix [15000001]	N
679	chr3	12327430	12327431	rs13076933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3p25.2	PPARG	rs13076933-T	0.740551	3E-18		0.0208296	[0.016-0.026] unit increase	Affymetrix [NR] (imputed)	N
679	chr3	12327430	12327431	rs13076933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p25.2	PPARG	rs13076933-T	0.740599	2E-14		0.0166659	[0.012-0.021] unit increase	Affymetrix [NR] (imputed)	N
679	chr3	12327430	12327431	rs13076933	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3p25.2	PPARG	rs13076933-T	0.740581	4E-14		0.018049	[0.013-0.023] unit increase	Affymetrix [NR] (imputed)	N
679	chr3	12327430	12327431	rs13076933	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3p25.2	intergenic	rs13076933-?	NR	6E-26		0.0309	[0.026-0.036] unit decrease	Affymetrix [5701386] (imputed)	N
679	chr3	12329451	12329452	rs17029006	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p25.2	PPARG	rs17029006-C	0.72369	2E-11		0.0103969	[0.0074-0.0134] unit increase	Affymetrix [12370749]	N
679	chr3	12329782	12329783	rs17036160	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	9,228 European ancestry individuals	NA	3p25.2		rs17036160-T	0.1229	3E-7		0.0805	[0.05-0.111] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
679	chr3	12329782	12329783	rs17036160	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting insulin adjusted for BMI	48,395 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	3p25.2		rs17036160-T	0.1002	9E-10		0.0718	[0.049-0.095] unit decrease	Affymetrix, Illumina [28462191] (imputed)	N
679	chr3	12329782	12329783	rs17036160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p25.2		rs17036160-T	NR	2E-22		0.1092	[0.087-0.131] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
679	chr3	12329782	12329783	rs17036160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3p25.2		rs17036160-T	NR	4E-15		0.1203	[0.09-0.15] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
679	chr3	12329782	12329783	rs17036160	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p25.2	NR	rs17036160-C	0.8796	3E-47		0.1028	[0.089-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
679	chr3	12329782	12329783	rs17036160	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p25.2	NR	rs17036160-C	0.8874	2E-53		0.1007	[0.088-0.113] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
679	chr3	12329782	12329783	rs17036160	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	3p25.2	PPARG	rs17036160-C	0.882	4E-6		0.028	[0.016-0.04] unit increase	Affymetrix [~ 10446505] (imputed)	N
679	chr3	12329782	12329783	rs17036160	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	3p25.2	PPARG	rs17036160-T	0.116465	7E-11		0.11809141	[0.083-0.154] unit decrease	Affymetrix [7288503] (imputed)	N
679	chr3	12329782	12329783	rs17036160	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3p25.2		rs17036160-?	NR	1E-11				NR [~ 8900000] (imputed)	N
679	chr3	12330410	12330411	rs17036170	22968431	Urban TJ	2012-09-09	Pharmacogenet Genomics	Limited contribution of common genetic variants to risk for liver injury due to a variety of drugs.	Drug-induced liver injury	783 European ancestry cases, 3,001 European ancestry controls	307 European ancestry cases, 2,587 European ancestry controls	3p25.2	PPARG	rs17036170-?	NR	2E-8	(Diclofenac)	11.3	[4.9-25.9]	Illumina [800769]	N
679	chr3	12331835	12331836	rs12496413	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3p25.2		rs12496413-C	0.674	2E-21				Affymetrix [10369434] (imputed)	N
679	chr3	12334331	12334332	rs35080475	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs35080475-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
679	chr3	12334351	12334352	rs35958630	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs35958630-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
679	chr3	12334415	12334416	rs2972164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs2972164-T	NR	4E-19		0.025243	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12334415	12334416	rs2972164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2972164-T	NR	1E-19		0.0256183	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12334415	12334416	rs2972164	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2972164-T	NR	2E-10		0.0182204	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
679	chr3	12334415	12334416	rs2972164	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p25.2	NR	rs2972164-T	0.460702141477614	8E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
679	chr3	12334415	12334416	rs2972164	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p25.2	NR	rs2972164-T	0.460702141477614	2E-8		0.018405639	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
679	chr3	12334554	12334555	rs6782178	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p25.2	PPARG	rs6782178-C	0.586402	5E-16		0.0153392	[0.012-0.019] unit decrease	NR [13737936] (imputed)	N
679	chr3	12334990	12334991	rs2960422	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p25.2		rs2960422-A	NR	2E-34		0.0203	[0.017-0.024] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
679	chr3	12334990	12334991	rs2960422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p25.2	PPARG	rs2960422-A	0.602339	2E-29		0.025978766	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12334990	12334991	rs2960422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p25.2	PPARG	rs2960422-A	0.602359	3E-19		0.022284076	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12334990	12334991	rs2960422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p25.2		rs2960422-?	NR	2E-44				NR [~ 8900000] (imputed)	N
679	chr3	12334990	12334991	rs2960422	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	3p25.2	PPARG	rs2960422-A	0.600616	6E-7		1.1	[1.06-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
679	chr3	12334990	12334991	rs2960422	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	3p25.2	PPARG	rs2960422-A	0.6	5E-7		1.08	[1.05-1.12]	Affymetrix, Illumina [~ 11700000] (imputed)	N
679	chr3	12334990	12334991	rs2960422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3p25.2	PPARG	rs2960422-A	0.6019	2E-13		0.02692759	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12334990	12334991	rs2960422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p25.2	PPARG	rs2960422-A	0.6019	5E-16		0.02960234	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12334990	12334991	rs2960422	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p25.2	PPARG	rs2960422-A	0.602	1E-18		0.03213278	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12335080	12335081	rs2920505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs2920505-A	0.585538	1E-48				Affymetrix, Illumina [19872809] (imputed)	N
679	chr3	12335080	12335081	rs2920505	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p25.2	NR	rs2920505-A	0.601796	9E-49		0.029644	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
679	chr3	12336506	12336507	rs11709077	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3p25.2	PPARG	rs11709077-G	0.881267	4E-31		0.0089575	[0.0074-0.0105] unit increase	Affymetrix [13995440] (imputed)	N
679	chr3	12336506	12336507	rs11709077	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p25.2	PPARG	rs11709077-G	0.8765	2E-36		1.14	[1.11-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
679	chr3	12336506	12336507	rs11709077	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p25.2	PPARG	rs11709077-A	0.133	2E-7	(EA)	0.024	[0.015-0.033] kg/m2 increase	Affymetrix, Illumina [2550021]	N
679	chr3	12336506	12336507	rs11709077	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p25.2	PPARG	rs11709077-A	0.131	1E-7		0.024	[0.015-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
679	chr3	12336506	12336507	rs11709077	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p25.2	PPARG	rs11709077-G	NR	2E-7	(men)	1.12	[1.07-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
679	chr3	12336506	12336507	rs11709077	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p25.2	PPARG	rs11709077-G	NR	1E-8	(female)	1.14	[1.09-1.20]	Affymetrix, Illumina [up to 2500000] (imputed)	N
679	chr3	12337013	12337015	rs202180552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p25.2	PPARG	rs202180552-A	0.215709	3E-12		0.019750165	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
679	chr3	12344729	12344730	rs11712037	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	3p25.2	PPARG	rs11712037-?	NR	2E-16		0.0034	[0.0026-0.0042] unit decrease	Affymetrix [21347608] (imputed)	N
679	chr3	12344729	12344730	rs11712037	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	3p25.2	PPARG	rs11712037-?	NR	2E-41		0.0086	[0.0072-0.01] unit decrease	Affymetrix [21347608] (imputed)	N
679	chr3	12344729	12344730	rs11712037	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	3p25.2	PPARG	rs11712037-C	0.8653	2E-21		0.0278	[0.022-0.033] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
679	chr3	12344729	12344730	rs11712037	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p25.2	NR	rs11712037-?	NR	4E-17		0.27358	[0.21-0.34] unit increase	Affymetrix [7794483] (imputed)	N
679	chr3	12344729	12344730	rs11712037	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p25.2	NR	rs11712037-?	NR	3E-10	(male)	0.25189	[0.17-0.33] unit increase	Affymetrix [7794483] (imputed)	N
679	chr3	12344729	12344730	rs11712037	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p25.2	NR	rs11712037-?	NR	1E-8	(female)	0.30271	[0.2-0.41] unit increase	Affymetrix [7794483] (imputed)	N
679	chr3	12351222	12351223	rs12485478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p25.2		rs12485478-G	NR	2E-20		0.041	[0.032-0.05] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
679	chr3	12351222	12351223	rs12485478	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p25.2	NR	rs12485478-G	NR	1E-13		0.0577	[0.042-0.073] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12351222	12351223	rs12485478	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p25.2	PPARG	rs12485478-A	0.973439	1E-18		0.0524164	[0.041-0.064] unit increase	Affymetrix [NR] (imputed)	N
679	chr3	12358229	12358230	rs6442310	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3p25.2	PPARG	rs6442310-A	0.57	3E-11		0.02398849	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12359048	12359049	rs2067819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p25.2		rs2067819-A	NR	1E-16		0.0228	[0.018-0.028] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
679	chr3	12359048	12359049	rs2067819	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	3p25.2		rs2067819-A	0.19	4E-9		0.09	unit increase	Illumina [2093892] (imputed)	N
679	chr3	12359048	12359049	rs2067819	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	3p25.2		rs2067819-A	0.19	1E-9		0.1	unit increase	Illumina [2398641] (imputed)	N
679	chr3	12360357	12360357	rs527620413	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3p25.2		rs527620413-G,rs527620413-G	0.87543	2E-8		0.0335864	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
679	chr3	12360357	12360357	rs527620413	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3p25.2		rs527620413-G,rs527620413-G	0.87543	2E-8		0.0335864	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
679	chr3	12360493	12360494	rs12633551	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3p25.2	ATG7	rs12633551-T	0.0435	4E-8	(Trans-ethnic initial)	0.0509	[0.03-0.071] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
679	chr3	12360884	12360885	rs150732434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p25.2	PPARG	rs150732434-T	0.119512	8E-12		0.023862304	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
679	chr3	12364412	12364413	rs12631322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p25.2		rs12631322-G	NR	2E-22		0.0187	[0.015-0.022] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
679	chr3	12365307	12365308	rs13083375	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3p25.2	PPARG	rs13083375-G	0.881515	7E-32		0.00690905	[0.0057-0.0081] unit increase	Affymetrix [13995440] (imputed)	N
679	chr3	12368232	12368233	rs4073770	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p25.2	PPARG	rs4073770-T		2E-23		0.025	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
679	chr3	12368232	12368233	rs4073770	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3p25.2	PPARG	rs4073770-T	0.2482	1E-9		0.02517588	[0.017-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12369400	12369401	rs13064760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p25.2		rs13064760-?	NR	8E-16				NR [~ 8900000] (imputed)	N
679	chr3	12371081	12371082	rs12496005	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p25.2	NR	rs12496005-C	0.24294	3E-26		0.022827	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
679	chr3	12374331	12374332	rs117350179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	74,970 East Asian ancestry individuals	NA	3p25.2		rs117350179-G	0.22931	4E-8		0.0307532	[0.02-0.042] unit decrease	Illumina [13465896] (imputed)	N
679	chr3	12374331	12374332	rs117350179	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	High density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3p25.2	PPARG	rs117350179-?		2E-9		0.0379	[0.026-0.05] unit decrease	Illumina [31500000] (imputed)	N
679	chr3	12374331	12374332	rs117350179	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	High density lipoprotein cholesterol levels	70,657 Japanese ancestry individuals	NA	3p25.2	PPARG	rs117350179-?	NR	3E-8		0.0343	[0.022-0.046] unit decrease novel	Illumina [6108953] (imputed)	N
679	chr3	12375955	12375956	rs2012444	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Fatty acid-binding protein, adipocyte levels	21,758 European ancestry individuals	9,173 individuals	3p25.2		rs2012444-T	0.13	1E-16		0.0914	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
679	chr3	12376413	12376414	rs3885307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs3885307-G	0.25542	7E-36				Affymetrix, Illumina [24653286] (imputed)	N
679	chr3	12376413	12376414	rs3885307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs3885307-G	0.254485	4E-25				Affymetrix, Illumina [24558453] (imputed)	N
679	chr3	12377343	12377344	rs4518111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	3p25.2		rs4518111-C	NR	9E-11		0.0371	[0.026-0.048] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
679	chr3	12377343	12377344	rs4518111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p25.2		rs4518111-C	NR	9E-24		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
679	chr3	12377343	12377344	rs4518111	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4518111-A	NR	3E-15		0.0233313	[0.018-0.029] unit decrease	Affymetrix [321788] (imputed)	N
679	chr3	12377343	12377344	rs4518111	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	3p25.2	PPARG	rs4518111-A	0.433772	9E-11		0.03706217	[0.026-0.048] unit increase	Affymetrix [7288503] (imputed)	N
679	chr3	12379350	12379351	rs35240997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p25.2		rs35240997-G	NR	4E-21		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
679	chr3	12379350	12379351	rs35240997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p25.2		rs35240997-G	NR	1E-28		0.0248	[0.02-0.029] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p25.2	PPARG	rs35240997-G	0.213821	3E-21		0.025604267	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p25.2	PPARG	rs35240997-G	0.213828	2E-32		0.031954054	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.2	PPARG	rs35240997-G	0.213827	2E-28		0.030263912	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.2	NR	rs35240997-G	0.176413	5E-32				Affymetrix, Illumina [24332387] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p25.2	NR	rs35240997-G	0.215335	7E-32		0.026404	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
679	chr3	12379350	12379351	rs35240997	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p25.2	NR	rs35240997-G	0.215613	2E-37		0.028625	[0.024-0.033] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
679	chr3	12379350	12379351	rs35240997	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p25.2		rs35240997-?	NR	2E-30				NR [~ 8900000] (imputed)	N
679	chr3	12379350	12379351	rs35240997	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p25.2	PPARG	rs35240997-A	0.7924	1E-13		0.0256	[0.019-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	2E-8		0.0317934	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	1E-8		0.0325856	[0.021-0.044] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	8E-9		0.0329281	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	3E-8		0.0314311	[0.02-0.043] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834919	2E-8		0.0308501	[0.02-0.042] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	2E-8		0.031736	[0.021-0.043] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	3p25.2		rs3963364-C	0.834932	6E-10		0.0341723	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
679	chr3	12385356	12385357	rs3963364	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	3p25.2	NR	rs3963364-C	0.9598	9E-9		0.1502	[0.099-0.201] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
679	chr3	12385356	12385357	rs3963364	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3p25.2	PPARG	rs3963364-C	0.95	3E-11		1.12	[1.08-1.16]	Affymetrix, Illumina [11800000] (imputed)	N
679	chr3	12385356	12385357	rs3963364	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3p25.2	PPARG	rs3963364-C	0.96	9E-9		1.16	1.10-1.22	Illumina [12557761] (imputed)	N
679	chr3	12385827	12385828	rs11128603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p25.2		rs11128603-G	NR	9E-12		0.0203	[0.014-0.026] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
679	chr3	12385827	12385828	rs11128603	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p25.2	NR	rs11128603-A	0.88	3E-14		0.0218	[0.016-0.027] unit increase	NR [NR]	N
679	chr3	12385827	12385828	rs11128603	22990020	Huang J	2012-09-18	Blood	Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation.	Plasminogen activator inhibitor type 1 levels (PAI-1)	19,599 European ancestry individuals	10,764 European ancestry individuals	3p25.2	PPARG	rs11128603-?	NR	9E-8		0.066	[NR] unit increase	Affymetrix, Illumina [2445683] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	1E-18		0.025	mmol/L decrease	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	6E-33		0.035	nmol/L increase	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	7E-42				NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	6E-12		0.019	mmol/L increase	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	3E-37		0.029	% increase	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	1E-16		0.024	U/L decrease	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3p25.2		rs4684847-T	0.12	3E-31		0.034	U/L decrease	NR [NR] (imputed)	N
679	chr3	12386336	12386337	rs4684847	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p25.2	NR	rs4684847-T	0.119848	4E-19		0.0937224	[0.073-0.114] unit decrease	Affymetrix [17914406] (imputed)	N
679	chr3	12388408	12388409	rs7610055	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p25.2	PPARG	rs7610055-A	0.1207	4E-38		0.0373	[0.032-0.043] unit decrease	Affymetrix [18391927] (imputed)	N
679	chr3	12389312	12389313	rs17036326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3p25.2	NR	rs17036326-G	0.12176399999999998	1E-26		0.0194341	[0.016-0.023] unit increase	Affymetrix [16582621] (imputed)	N
679	chr3	12389312	12389313	rs17036326	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3p25.2	NR	rs17036326-G	0.12176399999999998	1E-18		0.0170022	[0.013-0.021] unit increase	Affymetrix [16582614] (imputed)	N
679	chr3	12390483	12390484	rs17036328	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA		PPARG	rs17036328-T	0.879183	5E-9		1.0396386	NR	Affymetrix [~ 9600000] (imputed)	N
679	chr3	12390483	12390484	rs17036328	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index (model adjusted for BMI)	16,753 European ancestry individuals	13,354 European ancestry individuals		PPARG	rs17036328-T	NR	1E-6		0.07	[0.050-0.090] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
679	chr3	12390483	12390484	rs17036328	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood insulin	35,380 European ancestry non-diabetic individuals, 12,738 African American non-diabetic individuals	NA		PPARG	rs17036328-G	0.10323383320661	7E-13		0.031257037	[0.023-0.04] unit decrease	Illumina [197481]	N
679	chr3	12391206	12391207	rs6802898	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs6802898-?	NR	6E-9		0.00807329	[0.0054-0.0108] unit increase	NR [NR]	N
679	chr3	12392271	12392272	rs7649970	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p25.2	NR	rs7649970-T	0.1208	2E-11		0.025485346	[0.018-0.033] unit increase	Affymetrix [10549349] (imputed)	N
679	chr3	12392271	12392272	rs7649970	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference variance	347,158 European ancestry individuals	NA	3p25.2	PPARG	rs7649970-?	NR	6E-10				NR [5554549] (imputed)	N
679	chr3	12392271	12392272	rs7649970	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Waist circumference	347,158 European ancestry individuals	NA	3p25.2	PPARG	rs7649970-?	NR	5E-10				NR [5554549] (imputed)	N
679	chr3	12393124	12393125	rs1801282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p25.2		rs1801282-G	NR	2E-26		0.0386	[0.032-0.046] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
679	chr3	12393124	12393125	rs1801282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p25.2		rs1801282-G	NR	2E-41		0.0481	[0.041-0.055] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
679	chr3	12393124	12393125	rs1801282	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	3p25.2		rs1801282-G	0.1202654	1E-7		0.86		Affymetrix [15533686] (imputed)	N
679	chr3	12393124	12393125	rs1801282	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3p25.2	NR	rs1801282-G	0.1197	2E-22		0.00332	[0.0026-0.004] unit decrease	Affymetrix [NR] (imputed)	N
679	chr3	12393124	12393125	rs1801282	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p25.2		rs1801282-C	0.8767	5E-9		0.19654442	[0.13-0.26] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
679	chr3	12393124	12393125	rs1801282	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p25.2		rs1801282-C	0.8766	4E-19		0.20423386	[0.16-0.25] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
679	chr3	12393124	12393125	rs1801282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p25.2	NR	rs1801282-G	0.12044699999999997	3E-67		0.021621	[0.019-0.024] unit increase	Affymetrix [16582909] (imputed)	N
679	chr3	12393124	12393125	rs1801282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p25.2	NR	rs1801282-G	0.11992899999999995	9E-43		0.0241704	[0.02-0.028] unit increase	Affymetrix [16585854] (imputed)	N
679	chr3	12393124	12393125	rs1801282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p25.2	NR	rs1801282-G	0.12044699999999997	1E-37		0.0183443	[0.016-0.021] unit increase	Affymetrix [16582965] (imputed)	N
679	chr3	12393124	12393125	rs1801282	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p25.2	NR	rs1801282-G	0.11992899999999995	8E-23		0.0202851	[0.016-0.025] unit increase	Affymetrix [16585866] (imputed)	N
679	chr3	12393124	12393125	rs1801282	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p25.2	NR	rs1801282-C	NR	2E-9		0.023	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
679	chr3	12393124	12393125	rs1801282	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	3p25.2	PPARG	rs1801282-C	0.871	1E-16		1.09	[1.07-1.12]	Affymetrix, Illumina [247470]	N
679	chr3	12393124	12393125	rs1801282	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	3p25.2	PPARG	rs1801282-C	0.887	3E-19		1.1	[1.07-1.12]	Affymetrix, Illumina [247470]	N
679	chr3	12393124	12393125	rs1801282	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	3p25.2	PPARG	rs1801282-C	0.871	5E-12		1.08	[1.05-1.10]	Affymetrix, Illumina [247470]	N
679	chr3	12393124	12393125	rs1801282	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	3p25.2	PPARG	rs1801282-C	0.887	1E-17		1.09	[1.07-1.11]	Affymetrix, Illumina [247470]	N
679	chr3	12393124	12393125	rs1801282	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3p25.2	PPARG	rs1801282-G	0.11829999999999996	1E-16		0.0237	[0.018-0.029] unit increase	Illumina [246328]	N
679	chr3	12393124	12393125	rs1801282	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3p25.2	PPARG	rs1801282-G	0.1203	2E-19		0.113	[0.088-0.138] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
679	chr3	12393124	12393125	rs1801282	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3p25.2	PPARG	rs1801282-G	0.1203	2E-14	(EA)	0.1134	[0.084-0.142] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
679	chr3	12393124	12393125	rs1801282	25625282	Mahajan A	2015-01-27	PLoS Genet	Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus.	Fasting blood insulin adjusted for BMI	up to 30,825 non-diabetic individuals	NA	3p25.2	PPARG	rs1801282-G	NR	1E-7		0.025	[0.017-0.033] unit decrease	Illumina [106489]	N
679	chr3	12393124	12393125	rs1801282	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3p25.2	PPARG	rs1801282-C	0.88	6E-10		1.16	[1.10-1.23]	Affymetrix, Illumina [2500000] (imputed)	N
679	chr3	12393124	12393125	rs1801282	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p25.2	PPARG	rs1801282-C	0.85520337260229	1E-12		1.13	[1.09-1.17]	Affymetrix, Illumina [up to 2500000] (imputed)	N
679	chr3	12393124	12393125	rs1801282	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood insulin (BMI interaction)	Up to 51,750 European ancestry individuals	Up to 33,823 European ancestry individuals	3p25.2	PPARG	rs1801282-C	0.8725	2E-7		0.001425	[-0.00034-0.00319] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
679	chr3	12393124	12393125	rs1801282	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	3p25.2	PPARG	rs1801282-C	NR	2E-6	(DGI+FUSION+WTCCC)	1.14	[1.08-1.20]	Affymetrix [393453]	N
679	chr3	12393124	12393125	rs1801282	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	3p25.2	PPARG	rs1801282-C	0.82	2E-6	(DGI+FUSION+WTCCC)	1.14	[1.08-1.20]	Illumina [315635]	N
679	chr3	12393124	12393125	rs1801282	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	3p25.2	PPARG	rs1801282-C	0.86	2E-6		1.14	[1.08-1.20]	Affymetrix [386731]	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877826	2E-8		0.0334377	[0.022-0.045] unit increase	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877826	3E-8		0.0331728	[0.021-0.045] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877933	2E-8		0.0338968	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877826	3E-8		0.034395	[0.022-0.047] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877826	2E-8		0.0333675	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877827	6E-10		0.0373792	[0.026-0.049] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877933	2E-8		0.0337921	[0.022-0.046] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877826	1E-8		0.033535	[0.022-0.045] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	3p25.2		rs1899951-C	0.877827	1E-9		0.0374588	[0.025-0.05] unit decrease	NR [11722792] (imputed)	N
679	chr3	12394839	12394840	rs1899951	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3p25.2		rs1899951-T	NR	3E-21		0.0346	[0.028-0.042] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
679	chr3	12394839	12394840	rs1899951	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3p25.2	PPARG	rs1899951-?	NR	1E-11		0.027	[0.02-0.034] unit decrease	Affymetrix [5701386] (imputed)	N
679	chr3	12394839	12394840	rs1899951	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3p25.2	PPARG	rs1899951-T	0.123288181623979	2E-24		0.1118	[0.09-0.133] unit decrease	NR [5035015] (imputed)	N
679	chr3	12394839	12394840	rs1899951	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p25.2	PPARG	rs1899951-T	0.12	6E-9		0.024	[0.016-0.032] unit increase	Illumina [6108953] (imputed)	N
679	chr3	12395644	12395645	rs4684848	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	3p25.2	PPARG	rs4684848-G	0.2	4E-8		1.1325028	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
679	chr3	12395957	12395958	rs7615916	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p25.2	PPARG	rs7615916-A	0.2466	2E-16		0.03435773	[0.026-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
679	chr3	12395972	12395972	rs758263745	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3p25.2		rs758263745-CA	0.683	2E-10		0.08	[0.05-0.1] % increase	Affymetrix [NR] (imputed)	N
679	chr3	12396587	12396588	rs4135247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p25.2		rs4135247-A	NR	1E-15		0.0155	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
679	chr3	12396587	12396588	rs4135247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p25.2		rs4135247-A	NR	3E-28		0.0207	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
679	chr3	12396587	12396588	rs4135247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135247-G	NR	1E-9		0.0173369	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12396587	12396588	rs4135247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135247-G	NR	9E-10		0.0174435	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12396587	12396588	rs4135247	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135247-G	NR	4E-11		0.0187893	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
679	chr3	12396587	12396588	rs4135247	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3p25.2	PPARG	rs4135247-G	0.43	1E-8		5.72	z-score increase	Affymetrix [4311822] (imputed)	N
679	chr3	12396587	12396588	rs4135247	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p25.2	PPARG	rs4135247-G	0.43	9E-11		6.49	z-score increase	Affymetrix [4314223] (imputed)	N
679	chr3	12396587	12396588	rs4135247	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3p25.2	PPARG	rs4135247-G	0.43	6E-22		9.63	z-score increase	Affymetrix [4312306] (imputed)	N
679	chr3	12396587	12396588	rs4135247	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p25.2	NR	rs4135247-G	0.433284	1E-8		0.0153765	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
679	chr3	12396912	12396913	rs71304101	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p25.2	PPARG	rs71304101-A	0.120365	3E-15		0.02731142	[0.021-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
679	chr3	12396912	12396913	rs71304101	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	3p25.2	PPARG	rs71304101-G	NR	4E-16		1.2229916		Affymetrix, Illumina [~ 13000000] (imputed)	N
679	chr3	12396954	12396955	rs2881654	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Waist-hip ratio and type 2 diabetes (pairwise)	311,200 European ancestry individuals, 25,662 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3p25.2	PPARG	rs2881654-A	0.1213	9E-12				Affymetrix, Illumina [2331072] (imputed)	N
679	chr3	12396954	12396955	rs2881654	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3p25.2	PPARG	rs2881654-A	0.1213	9E-14				Affymetrix, Illumina [2331072] (imputed)	N
679	chr3	12396954	12396955	rs2881654	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting insulin (pairwise)	374,012 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3p25.2	PPARG	rs2881654-A	0.1213	4E-9				Affymetrix, Illumina [2331072] (imputed)	N
679	chr3	12396954	12396955	rs2881654	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	3p25.2	PPARG	rs2881654-A	0.1213	8E-16				Affymetrix, Illumina [2331072] (imputed)	N
679	chr3	12396954	12396955	rs2881654	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting insulin (pairwise)	142,394 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	3p25.2	PPARG	rs2881654-A	0.1213	5E-8				Affymetrix, Illumina [2331072] (imputed)	N
679	chr3	12399406	12399407	rs12629751	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Potassium levels	132,938 Japanese ancestry individuals	NA	3p25.2	PPARG	rs12629751-?	NR	5E-9		0.02647	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
679	chr3	12412114	12412115	rs2921188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2921188-G	NR	7E-16		0.0248488	[0.019-0.031] unit increase	Affymetrix [321788] (imputed)	N
679	chr3	12412114	12412115	rs2921188	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs2921188-G	NR	4E-10		0.0185486	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
679	chr3	12416549	12416550	rs67901221	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (dense area)	24,192 European ancestry individuals	NA	3p25.2		rs67901221-?	NR	1E-8		0.069	[0.045-0.093] unit increase	Affymetrix [9906178] (imputed)	N
679	chr3	12419365	12419366	rs75262919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs75262919-T	NR	7E-9		0.029125	[0.019-0.039] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12419365	12419366	rs75262919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs75262919-T	NR	7E-9		0.0291396	[0.019-0.039] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12419365	12419366	rs75262919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs75262919-T	NR	3E-8		0.0288191	[0.019-0.039] unit increase	Affymetrix [321788] (imputed)	N
679	chr3	12419365	12419366	rs75262919	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs75262919-T	NR	7E-14		0.0324	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12419365	12419366	rs75262919	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3p25.2	NR	rs75262919-T	NR	7E-11		0.0282	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12419365	12419366	rs75262919	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p25.2	NR	rs75262919-T	NR	8E-11		0.0287	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12419365	12419366	rs75262919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs75262919-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
679	chr3	12426935	12426936	rs10510419	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.2	NR	rs10510419-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
679	chr3	12426935	12426936	rs10510419	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.2	NA	rs10510419-T	0.1467	2E-13		0.0168	[0.012-0.021] unit decrease	NR [~ 27400000] (imputed)	N
679	chr3	12437236	12437237	rs4135268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135268-G	NR	9E-17		0.041089	[0.031-0.051] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12437977	12437978	rs2938388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs2938388-A	NR	6E-22		0.028576	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12437977	12437978	rs2938388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2938388-A	NR	2E-22		0.0289499	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
679	chr3	12437977	12437978	rs2938388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2938388-A	NR	6E-11		0.0195904	[0.014-0.025] unit decrease	Affymetrix [321114] (imputed)	N
679	chr3	12437977	12437978	rs2938388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2938388-A	NR	9E-10		0.0183819	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
679	chr3	12439347	12439348	rs35812816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs35812816-G	NR	8E-17		0.0412132	[0.032-0.051] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12439347	12439348	rs35812816	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs35812816-G	NR	3E-9		0.0292492	[0.02-0.039] unit decrease	Affymetrix [321016] (imputed)	N
679	chr3	12441088	12441088	rs199689761	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	3p25.2		rs199689761-?	NR	2E-8		0.047	[0.031-0.063] unit decrease	Affymetrix [9906178] (imputed)	N
679	chr3	12441366	12441367	rs76643909	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	3p25.2		rs76643909-?	NR	5E-12		0.069	[0.049-0.089] unit increase	Affymetrix [9906178] (imputed)	N
679	chr3	12441366	12441367	rs76643909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p25.2	PPARG	rs76643909-G	0.149924	2E-9		0.019096369	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
679	chr3	12441506	12441507	rs2921193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs2921193-A	NR	7E-14		0.0210844	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12441506	12441507	rs2921193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs2921193-A	NR	4E-14		0.0213167	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
679	chr3	12441506	12441507	rs2921193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p25.2	NR	rs2921193-A	NR	3E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs4135275-?	NR	1E-11		0.00768624	[0.0055-0.0099] unit decrease	NR [NR]	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	6E-12		0.0205	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	6E-10		0.0184	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	3E-17		0.0264	[0.02-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	2E-10		0.0189	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	3E-19		0.0273	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	9E-15		0.023	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	2E-10		0.0191	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	1E-12		0.0211	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12443843	12443844	rs4135275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3p25.2	NR	rs4135275-G	NR	3E-16		0.0243	[0.018-0.03] unit increase	Affymetrix [9000000] (imputed)	N
679	chr3	12450092	12450093	rs1699337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1699337-G	NR	3E-7		0.024	unit increase	Affymetrix [at least 7091467] (imputed)	N
679	chr3	12450092	12450093	rs1699337	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1699337-G	0.682	7E-6	(EA)	0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
679	chr3	12450092	12450093	rs1699337	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	3p25.2	PPARG	rs1699337-G	0.65	9E-12		0.043	[0.031-0.055] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
679	chr3	12450837	12450838	rs147667955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3p25.2		rs147667955-C	0.992779	2E-11		0.157559	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
679	chr3	12450837	12450838	rs147667955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p25.2		rs147667955-C	0.992779	2E-10		0.145489	[0.1-0.19] unit increase	NR [11722792] (imputed)	N
679	chr3	12450837	12450838	rs147667955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3p25.2		rs147667955-C	0.992779	8E-11		0.149919	[0.1-0.2] unit increase	NR [11722792] (imputed)	N
679	chr3	12450837	12450838	rs147667955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	3p25.2		rs147667955-C	0.992779	1E-12		0.157787	[0.11-0.2] unit increase	NR [11722792] (imputed)	N
679	chr3	12450837	12450838	rs147667955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3p25.2		rs147667955-T	NR	2E-19		0.1269	[0.099-0.155] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
679	chr3	12450837	12450838	rs147667955	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p25.2	PPARG	rs147667955-C	0.992568	5E-29		0.0144902	[0.012-0.017] unit increase	Affymetrix [13995440] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	5E-23		0.0347447	[0.028-0.042] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	1E-22		0.0344221	[0.028-0.041] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	2E-9		0.0213728	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	2E-14		0.0280703	[0.021-0.035] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	3E-12		0.0245031	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12457921	12457922	rs4684103	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684103-T	NR	3E-10		0.0223762	[0.015-0.029] unit increase	Affymetrix [321169] (imputed)	N
680	chr3	12465955	12465956	rs4135292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135292-A	NR	5E-16		0.0895933	[0.068-0.111] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12465955	12465956	rs4135292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135292-A	NR	3E-16		0.0902612	[0.069-0.112] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12465955	12465956	rs4135292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135292-A	NR	9E-15		0.0863173	[0.064-0.108] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12465955	12465956	rs4135292	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135292-A	NR	2E-15		0.0889615	[0.067-0.111] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12468409	12468410	rs73136795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs73136795-A	NR	2E-17		0.0376019	[0.029-0.046] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12468409	12468410	rs73136795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs73136795-A	NR	1E-17		0.0378423	[0.029-0.047] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12468409	12468410	rs73136795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs73136795-A	NR	1E-12		0.0328005	[0.024-0.042] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12468409	12468410	rs73136795	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs73136795-A	NR	5E-10		0.0275614	[0.019-0.036] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	6E-24		0.0297873	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	9E-25		0.03033	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	8E-13		0.0213104	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	2E-16		0.0251368	[0.019-0.031] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	2E-9		0.0176986	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12470238	12470239	rs1797912	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1797912-C	NR	6E-11		0.0195182	[0.014-0.025] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12470238	12470239	rs1797912	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1797912-A	NR	4E-11		0.029	unit increase	Affymetrix [at least 7091467] (imputed)	N
680	chr3	12470238	12470239	rs1797912	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1797912-A	0.63	4E-10	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
680	chr3	12470238	12470239	rs1797912	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1797912-A	NR	1E-9		0.028	unit increase	Affymetrix [at least 7091467] (imputed)	N
680	chr3	12470238	12470239	rs1797912	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p25.2	NR	rs1797912-A	0.63	1E-9	(EA)	0.03	unit increase	Affymetrix [at least 7091467] (imputed)	N
680	chr3	12471870	12471871	rs1152002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs1152002-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12473044	12473045	rs3103310	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p25.2	PPARG	rs3103310-A	0.758216	6E-18		0.0204555	[0.016-0.025] unit decrease	Affymetrix [NR] (imputed)	N
680	chr3	12473044	12473045	rs3103310	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3p25.2	NR	rs3103310-A	0.757736	3E-9		0.00895949	[0.006-0.012] unit increase	Affymetrix [16578495] (imputed)	N
680	chr3	12473044	12473045	rs3103310	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs3103310-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12475087	12475088	rs7626560	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p25.2	NR	rs7626560-C	0.150099	9E-10		0.05380007	[0.037-0.071] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
680	chr3	12475087	12475088	rs7626560	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p25.2	Intergenic	rs7626560-T	0.1601	7E-10		0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
680	chr3	12475556	12475557	rs3856806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs3856806-T	NR	2E-8		0.0236796	[0.015-0.032] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12475556	12475557	rs3856806	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs3856806-T	NR	2E-8		0.0239658	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12475556	12475557	rs3856806	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p25.2	NR	rs3856806-T	NR	1E-14		0.0291	[0.022-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
680	chr3	12475993	12475994	rs4135300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135300-T	NR	5E-8		0.0251109	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12475993	12475994	rs4135300	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4135300-T	NR	4E-8		0.0253348	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12476554	12476555	rs56133301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p25.2	PPARG	rs56133301-A	0.014941	3E-9		0.05617464	[0.038-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr3	12481173	12481174	rs114496946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs114496946-C	NR	8E-29		0.132868	[0.11-0.16] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12481173	12481174	rs114496946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs114496946-C	NR	4E-29		0.133703	[0.11-0.16] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12481173	12481174	rs114496946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs114496946-C	NR	4E-25		0.12475	[0.1-0.15] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12481173	12481174	rs114496946	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs114496946-C	NR	7E-23		0.118787	[0.095-0.142] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12481173	12481174	rs114496946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs114496946-?	NR	8E-24				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12481173	12481174	rs114496946	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs114496946-?	NR	4E-20				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12484680	12484681	rs66603943	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs66603943-C	NR	7E-11		0.0228939	[0.016-0.03] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	8E-27		0.0307499	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	5E-27		0.030877	[0.025-0.037] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	8E-10		0.0177795	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	1E-19		0.0269849	[0.021-0.033] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	2E-18		0.0251562	[0.02-0.031] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12484848	12484849	rs4684104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684104-A	NR	7E-11		0.0189465	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12485843	12485844	rs1175381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs1175381-G	NR	1E-16		0.0632445	[0.048-0.078] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12485843	12485844	rs1175381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1175381-G	NR	1E-16		0.0635185	[0.049-0.079] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12485843	12485844	rs1175381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1175381-G	NR	7E-13		0.0554688	[0.04-0.071] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12485843	12485844	rs1175381	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1175381-G	NR	5E-12		0.05332	[0.038-0.068] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12485914	12485915	rs150596060	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs150596060-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12487611	12487612	rs1152008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs1152008-G	NR	7E-19		0.0256901	[0.02-0.031] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12487611	12487612	rs1152008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1152008-G	NR	4E-19		0.0259062	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12487611	12487612	rs1152008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs1152008-G	NR	1E-15		0.024051	[0.018-0.03] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12487611	12487612	rs1152008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs1152008-G	NR	2E-11		0.0193169	[0.014-0.025] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12487611	12487612	rs1152008	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p25.2	NR	rs1152008-T	0.6257	6E-16		0.0142	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
680	chr3	12488283	12488284	rs34625560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p25.2		rs34625560-?	NR	3E-8				NR [~ 8900000] (imputed)	N
680	chr3	12488881	12488882	rs4684854	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	3p25.2	PPARG	rs4684854-C		4E-6	(WHRadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	3E-27		0.034639	[0.028-0.041] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	2E-27		0.0348149	[0.029-0.041] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	9E-12		0.0220869	[0.016-0.028] unit increase	Affymetrix [321114] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	3E-15		0.02627	[0.02-0.033] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	7E-14		0.0239984	[0.018-0.03] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12489011	12489012	rs11716727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs11716727-T	NR	3E-13		0.0237038	[0.017-0.03] unit increase	Affymetrix [321169] (imputed)	N
680	chr3	12489011	12489012	rs11716727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs11716727-?	NR	4E-23				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12489011	12489012	rs11716727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs11716727-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12489011	12489012	rs11716727	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p25.2	NR	rs11716727-T	0.2623	3E-24		0.023	[0.018-0.028] unit increase	NR [~ 27400000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs17819328-G	NR	2E-35		0.0368679	[0.031-0.043] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12489341	12489342	rs17819328	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs17819328-G	NR	1E-29		0.0322805	[0.027-0.038] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12489341	12489342	rs17819328	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p25.2	NR	rs17819328-G	0.43	1E-38		0.023	[0.019-0.027] unit increase	Affymetrix [2446094] (imputed)	N
680	chr3	12489341	12489342	rs17819328	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p25.2	NR	rs17819328-G	0.43	5E-8				Affymetrix [2446094] (imputed)	N
680	chr3	12489341	12489342	rs17819328	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p25.2	PPARG	rs17819328-G	0.4249	5E-16		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p25.2	PPARG	rs17819328-G	0.43179999999999996	4E-8	(women)	0.0283	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p25.2	PPARG	rs17819328-G	0.43179999999999996	4E-7		0.0196	[0.012-0.027] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p25.2	PPARG	rs17819328-G	0.43200000000000005	4E-7	(women)	0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p25.2	PPARG	rs17819328-G	0.43200000000000005	4E-7	(women)	0.0307	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p25.2	PPARG	rs17819328-G	0.43179999999999996	7E-6		0.021	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p25.2	PPARG	rs17819328-?	0.43179999999999996	6E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p25.2	PPARG	rs17819328-?	0.43179999999999996	6E-6				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p25.2	PPARG	rs17819328-T	0.5694	2E-6	(women)	0.0162	[0.0095-0.0229] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p25.2	PPARG	rs17819328-T	0.5694	6E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p25.2	PPARG	rs17819328-T	0.5694	9E-10	(women)	0.0294	[0.02-0.039] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p25.2	PPARG	rs17819328-T	0.5694	6E-7		0.0181	[0.011-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3p25.2	PPARG	rs17819328-G	NR	5E-6	(PWY-6353_purine_nucleotides_degradation_II_(aerobic))	4.565011	Z-score increase	Illumina [8100000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p25.2	PPARG, TSEN2, RAF1, TMEM40, IQSEC1, SYN2, TIMP4, LOC100129480, CAND2, MKRN2, RPL32, SNORA7A	rs17819328-G	0.43114	9E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	3p25.2	PPARG, TSEN2, RAF1, TMEM40, IQSEC1, SYN2, TIMP4, LOC100129480, CAND2, MKRN2, RPL32, SNORA7A	rs17819328-G	0.43113999999999997	2E-6	(women)	0.0288	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	3p25.2	PPARG, TSEN2, RAF1, TMEM40, IQSEC1, SYN2, TIMP4, LOC100129480, CAND2, MKRN2, RPL32, SNORA7A	rs17819328-G	0.43	9E-6	(women)	0.035	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p25.2	PPARG, TSEN2, RAF1, TMEM40, IQSEC1, SYN2, TIMP4, LOC100129480, CAND2, MKRN2, RPL32, SNORA7A	rs17819328-G	0.43114	1E-7		0.0288	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p25.2	NR	rs17819328-T	0.568866821787217	1E-7		0.018419184	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-G	0.4318	5E-14	(EA, women)	0.0352	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-G	0.4317	2E-9	(EA)	0.0208	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-G	0.4302	6E-10		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-G	0.4277	4E-14	(women)	0.0348	[0.026-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-T	0.568	2E-6	(EA)	0.0163	[0.0094-0.0232] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-T	0.568	2E-12	(EA, women)	0.0321	[0.023-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-T	0.5686	9E-10	(EA)	0.0227	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12489341	12489342	rs17819328	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.2	PPARG	rs17819328-T	0.5686	2E-10	(EA, women)	0.03	[0.021-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
680	chr3	12493076	12493077	rs13091092	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudate nucleus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p25.2	NR	rs13091092-?		4E-6				Illumina [4322238] (imputed)	N
680	chr3	12493292	12493293	rs73027298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs73027298-T	NR	4E-13		0.0312748	[0.023-0.04] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12493292	12493293	rs73027298	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs73027298-T	NR	4E-13		0.0311749	[0.023-0.04] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	1E-22		0.0301767	[0.024-0.036] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	6E-23		0.0304849	[0.024-0.037] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	3E-11		0.0206476	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	1E-12		0.0227165	[0.016-0.029] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	3E-10		0.0194435	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12493862	12493863	rs4684857	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684857-G	NR	2E-11		0.0209332	[0.015-0.027] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12494793	12494794	rs2249407	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs2249407-?	NR	2E-11		0.00613055	[0.0043-0.0079] unit decrease	NR [NR]	N
680	chr3	12494793	12494794	rs2249407	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	3p25.2	NR	rs2249407-A		7E-6				Illumina [458865]	N
680	chr3	12496460	12496461	rs9872031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs9872031-A	NR	4E-44		0.039695	[0.034-0.045] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12496460	12496461	rs9872031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs9872031-A	NR	1E-44		0.0399884	[0.034-0.046] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12496460	12496461	rs9872031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p25.2		rs9872031-?	NR	1E-34				NR [~ 8900000] (imputed)	N
680	chr3	12496886	12496887	rs13067911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs13067911-C	NR	8E-11		0.0211404	[0.015-0.028] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12496886	12496887	rs13067911	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs13067911-C	NR	2E-9		0.0186688	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12497593	12497594	rs58691354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs58691354-T	NR	3E-9		0.0232021	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12497593	12497594	rs58691354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs58691354-T	NR	2E-9		0.0234879	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12497593	12497594	rs58691354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs58691354-T	NR	4E-13		0.0294801	[0.022-0.037] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12497593	12497594	rs58691354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs58691354-T	NR	7E-10		0.0241399	[0.016-0.032] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12498400	12498401	rs4684859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684859-A	NR	2E-15		0.0229172	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
680	chr3	12498400	12498401	rs4684859	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	PPARG	rs4684859-A	NR	2E-16		0.0236964	[0.018-0.029] unit increase	Affymetrix [321169] (imputed)	N
680	chr3	12500064	12500065	rs28595399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs28595399-C	NR	2E-23		0.0306794	[0.025-0.037] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12500064	12500065	rs28595399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs28595399-C	NR	1E-23		0.0308994	[0.025-0.037] unit increase	Affymetrix [319769] (imputed)	N
680	chr3	12500064	12500065	rs28595399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs28595399-C	NR	2E-24		0.0326886	[0.026-0.039] unit decrease	Affymetrix [321788] (imputed)	N
680	chr3	12500064	12500065	rs28595399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs28595399-C	NR	3E-18		0.0267216	[0.021-0.033] unit decrease	Affymetrix [321016] (imputed)	N
680	chr3	12500241	12500242	rs13059198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	PPARG	rs13059198-A	NR	2E-8		0.0177434	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12500241	12500242	rs13059198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	PPARG	rs13059198-A	NR	3E-8		0.0177082	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12500650	12500651	rs9809905	31135556	Wyles CC	2019-05-13	Clin Orthop Relat Res	CORR(R) ORS Richard A. Brand Award: Disruption in Peroxisome Proliferator-Activated Receptor-? (PPARG) Increases Osteonecrosis Risk Through Genetic Variance and Pharmacologic Modulation.	Idiopathic osteonecrosis of the femoral head	3 African American cases, 1 Asian ancestry case, 98 European ancestry cases, 6 African American controls, 1 Asian ancestry control, 4,118 European ancestry controls	1 African American case, 1 Asian ancestry case, 36 European ancestry cases, 1 African American control, 2 Asian ancestry controls, 461 European ancestry controls	3p25.2	PPARG	rs9809905-G	0.3895	6E-6		1.94	[1.46-2.59]	Illumina [NR] (imputed)	N
680	chr3	12501092	12501093	rs73029213	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs73029213-?	NR	2E-8		0.00768288	[0.005-0.0104] unit decrease	NR [NR]	N
680	chr3	12501092	12501093	rs73029213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p25.2	NR	rs73029213-G	NR	3E-9		0.0224	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
680	chr3	12501092	12501093	rs73029213	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p25.2	NR	rs73029213-G	NR	2E-9		0.0227	[0.015-0.03] unit increase	Affymetrix [9000000] (imputed)	N
680	chr3	12503892	12503893	rs2655268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs2655268-T	NR	6E-24		0.0357225	[0.029-0.043] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12503892	12503893	rs2655268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs2655268-T	NR	1E-24		0.0363626	[0.029-0.043] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12503892	12503893	rs2655268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs2655268-T	NR	4E-13		0.0259276	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12503892	12503893	rs2655268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs2655268-T	NR	1E-15		0.0295448	[0.022-0.037] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12503892	12503893	rs2655268	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs2655268-T	NR	2E-11		0.0241531	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
680	chr3	12503892	12503893	rs2655268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs2655268-?	NR	8E-26				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12503892	12503893	rs2655268	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs2655268-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
680	chr3	12504289	12504290	rs1619599	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.2	Intergenic	rs1619599-A	0.601	4E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
680	chr3	12504294	12504295	rs1699346	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.2	Intergenic	rs1699346-A	0.601	4E-6		0.008	unit decrease	Illumina [NR] (imputed)	N
680	chr3	12504774	12504775	rs1699347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs1699347-G	NR	4E-11		0.0285829	[0.02-0.037] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12504774	12504775	rs1699347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs1699347-G	NR	1E-11		0.0291804	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12504774	12504775	rs1699347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs1699347-G	NR	4E-8		0.024008	[0.015-0.033] unit decrease	Affymetrix [321114] (imputed)	N
680	chr3	12511511	12511512	rs1151988	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p25.2	PPARG, TSEN2	rs1151988-?	NR	9E-6		1.1111112	[1.05-1.16]	Illumina [at least 5000000] (imputed)	N
680	chr3	12512275	12512276	rs113678169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs113678169-T	NR	2E-13		0.0400285	[0.029-0.051] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12512275	12512276	rs113678169	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs113678169-T	NR	1E-13		0.0403992	[0.03-0.051] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12513530	12513531	rs77747822	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs77747822-A	NR	5E-14		0.0412324	[0.031-0.052] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12513530	12513531	rs77747822	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs77747822-A	NR	4E-11		0.0346684	[0.024-0.045] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12515601	12515602	rs6763925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs6763925-C	NR	2E-14		0.0237536	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12515601	12515602	rs6763925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs6763925-C	NR	3E-15		0.0244082	[0.018-0.03] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12515601	12515602	rs6763925	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs6763925-C	NR	9E-9		0.0177376	[0.012-0.024] unit increase	Affymetrix [321016] (imputed)	N
680	chr3	12515601	12515602	rs6763925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p25.2		rs6763925-C	0.294181	8E-15		0.019129174	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr3	12515601	12515602	rs6763925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p25.2		rs6763925-C	0.294262	3E-15		0.019505596	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr3	12515601	12515602	rs6763925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p25.2		rs6763925-C	0.294256	1E-10		0.015814882	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
680	chr3	12517102	12517103	rs1797885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3p25.2	intergenic	rs1797885-A	0.5837	3E-10		0.02266061	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
680	chr3	12520561	12520562	rs808791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p25.2		rs808791-T	0.552555	2E-10		0.014643051	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
680	chr3	12537628	12537629	rs115415354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2	rs115415354-A	NR	4E-8		0.0639008	[0.041-0.087] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12537628	12537629	rs115415354	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2	rs115415354-A	NR	5E-8		0.0638305	[0.041-0.087] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12546171	12546172	rs2596827	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gastric polyp	6,155 European ancestry cases, 341,871 European ancestry controls, 1,337 East Asian ancestry cases, 158,249 East Asian ancestry controls	NA	3p25.2		rs2596827-G	NR	1E-8		0.1019	[0.067-0.137] unit increase	Affymetrix, Illumina [20456140] (imputed)	N
680	chr3	12572704	12572704	rs150049107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2, C3orf83	rs150049107-ACAATT	NR	2E-10		0.0180729	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12572704	12572704	rs150049107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TSEN2, C3orf83	rs150049107-ACAATT	NR	2E-11		0.0189817	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
680	chr3	12572704	12572704	rs150049107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	TSEN2, C3orf83	rs150049107-ACAATT	NR	2E-12		0.0207473	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
680	chr3	12580636	12580636	rs766604880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TSEN2, C3orf83	rs766604880-C	NR	1E-8		0.027921	[0.018-0.038] unit increase	Affymetrix [321016] (imputed)	N
681	chr3	12601940	12601941	rs2596820	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p25.2		rs2596820-?	NR	3E-18				NR [~ 8900000] (imputed)	N
681	chr3	12610731	12610732	rs1986068	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3p25.2	NR	rs1986068-C	NR	4E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix [9000000] (imputed)	N
681	chr3	12611268	12611269	rs1962515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	MKRN2	rs1962515-T	NR	4E-11		0.0197309	[0.014-0.026] unit decrease	Affymetrix [321788] (imputed)	N
681	chr3	12614615	12614616	rs113105671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	MKRN2	rs113105671-G	NR	1E-11		0.0334254	[0.024-0.043] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12614615	12614616	rs113105671	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	MKRN2	rs113105671-G	NR	2E-10		0.0328757	[0.023-0.043] unit increase	Affymetrix [321788] (imputed)	N
681	chr3	12614615	12614616	rs113105671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs113105671-G	NR	5E-10		0.0264	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12614615	12614616	rs113105671	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p25.2	NR	rs113105671-G	NR	4E-12		0.0301	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12619082	12619083	rs2344825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p25.2		rs2344825-?	NR	2E-11				NR [~ 8900000] (imputed)	N
681	chr3	12621074	12621075	rs73130305	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p25.2	MKRN2	rs73130305-T	0.218776	5E-12		0.018509356	[0.013-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
681	chr3	12622622	12622623	rs9849171	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p25.2	NR	rs9849171-C	0.36	2E-10		0.0121	[0.0083-0.0159] unit decrease	NR [NR]	N
681	chr3	12622622	12622623	rs9849171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p25.2		rs9849171-?	NR	5E-8				NR [~ 8900000] (imputed)	N
681	chr3	12624069	12624070	rs15997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	MKRN2	rs15997-C	NR	4E-10		0.0178475	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
681	chr3	12624069	12624070	rs15997	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	MKRN2	rs15997-C	NR	9E-11		0.0184968	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
681	chr3	12624320	12624321	rs5746255	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	MKRN2	rs5746255-G	NR	3E-15		0.0276555	[0.021-0.035] unit increase	Affymetrix [321788] (imputed)	N
681	chr3	12626515	12626516	rs3729931	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	RAF1	rs3729931-A	NR	2E-12		0.0213226	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
681	chr3	12626515	12626516	rs3729931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p25.2	NR	rs3729931-A	NR	6E-15		0.0193	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12626515	12626516	rs3729931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p25.2	NR	rs3729931-A	NR	3E-12		0.0182	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
681	chr3	12626515	12626516	rs3729931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3p25.2	NR	rs3729931-A	NR	3E-12		0.0173	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12626515	12626516	rs3729931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p25.2	NR	rs3729931-A	NR	3E-20		0.0234	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12626515	12626516	rs3729931	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3p25.2	NR	rs3729931-A	NR	6E-12		0.0171	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
681	chr3	12626515	12626516	rs3729931	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	3p25.2	RAF1	rs3729931-?	NR	7E-7	(dominant)			Affymetrix [361034]	N
681	chr3	12628919	12628920	rs2290159	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p25.2	RAF1	rs2290159-C	0.23	2E-9		0.037	[NR] unit decrease	NR [NR] (imputed)	N
681	chr3	12628919	12628920	rs2290159	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Cholesterol, total	100,184 European ancestry individuals	NA	3p25.2	RAF1	rs2290159-C	0.22	4E-9		1.42	[0.97-1.87] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
681	chr3	12635299	12635299	rs534708213	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	RAF1	rs534708213-TTTC	NR	2E-11		0.0348133	[0.025-0.045] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12635622	12635623	rs9852128	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p25.2		rs9852128-?	NR	2E-9		0.00653577	[0.0044-0.0087] unit increase	NR [NR]	N
681	chr3	12641348	12641349	rs5746226	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p25.2		rs5746226-?	NR	3E-6		0.7972535	[0.46-1.13] unit increase	Illumina [9875426] (imputed)	N
681	chr3	12658600	12658601	rs5746193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p25.2		rs5746193-?	NR	8E-10				NR [~ 8900000] (imputed)	N
681	chr3	12659113	12659114	rs139301022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	RAF1	rs139301022-A	NR	8E-17		0.109992	[0.084-0.136] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12659113	12659114	rs139301022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	RAF1	rs139301022-A	NR	5E-17		0.110837	[0.085-0.137] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12659113	12659114	rs139301022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	RAF1	rs139301022-A	NR	2E-14		0.102264	[0.076-0.128] unit decrease	Affymetrix [321114] (imputed)	N
681	chr3	12659113	12659114	rs139301022	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p25.2	RAF1	rs139301022-A	NR	7E-14		0.0998571	[0.074-0.126] unit decrease	Affymetrix [321169] (imputed)	N
681	chr3	12662116	12662117	rs11713601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.2		rs11713601-?	NR	2E-21				NR [~ 8900000] (imputed)	N
681	chr3	12673823	12673823	rs34396520	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p25.2	NR	rs34396520-CA	0.36231599999999997	4E-11		0.0206815	[0.014-0.027] unit increase	Affymetrix [16577313] (imputed)	N
681	chr3	12677157	12677158	rs7610956	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p25.2	RAF1	rs7610956-G	NR	1E-8		0.0207988	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
681	chr3	12688283	12688284	rs73132351	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	RAF1	rs73132351-G	NR	1E-16		0.0298875	[0.023-0.037] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12688283	12688284	rs73132351	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	RAF1	rs73132351-G	NR	3E-17		0.0305599	[0.023-0.038] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12689450	12689451	rs55762590	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs55762590-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
681	chr3	12690342	12690343	rs1874942	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p25.2		rs1874942-?	NR	7E-10				NR [~ 8900000] (imputed)	N
681	chr3	12699360	12699361	rs13101202	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3p25.2	RAF1	rs13101202-C	0.17407799999999995	2E-9		1.049118	[1.03277851151015-1.06571614202824]	NR [9572556] (imputed)	N
681	chr3	12701069	12701069	rs142536918	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	RAF1	rs142536918-C	0.68092	8E-11	(-16 ms)	0.0394288	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
681	chr3	12701069	12701069	rs142536918	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	RAF1	rs142536918-C	0.68092	4E-11	(-14 ms)	0.040324	[0.029-0.052] unit increase	Affymetrix [10000000] (imputed)	N
681	chr3	12701069	12701069	rs142536918	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	RAF1	rs142536918-C	0.68092	3E-9	(-18 ms)	0.0361019	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
681	chr3	12707937	12707937	rs35212888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	RAF1	rs35212888-CA	NR	4E-14		0.0228662	[0.017-0.029] unit decrease	Affymetrix [319769] (imputed)	N
681	chr3	12709484	12709485	rs7639513	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3p25.2	Intergenic	rs7639513-T	NR	2E-6		0.0183828	[0.011-0.026] unit decrease	Illumina [13520550] (imputed)	N
682	chr3	12728044	12728045	rs7619102	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	3p25.2	RAF1, TMEM40	rs7619102-G	NR	8E-6		4.474	NR z score increase	Illumina [7839440] (imputed)	N
682	chr3	12737066	12737069	rs867606797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p25.2		rs867606797-G	0.46949	2E-12		0.01630417	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr3	12737066	12737069	rs867606797	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.2		rs867606797-G	0.469482	4E-12		0.016151803	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr3	12737230	12737231	rs13323506	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p25.2	RAF1	rs13323506-A	0.311266	2E-10		0.0131152	[0.0091-0.0171] unit decrease	Affymetrix [NR] (imputed)	N
682	chr3	12739168	12739169	rs148753885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p25.2		rs148753885-G	0.083701	2E-16		0.033444002	[0.025-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
682	chr3	12743952	12743953	rs112126248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	CRIP1P1	rs112126248-A	NR	3E-10		0.0387606	[0.027-0.051] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12743952	12743953	rs112126248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	CRIP1P1	rs112126248-A	NR	5E-10		0.0384508	[0.026-0.051] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12743952	12743953	rs112126248	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p25.2	CRIP1P1	rs112126248-A	NR	2E-8		0.0360628	[0.024-0.049] unit increase	Affymetrix [321788] (imputed)	N
682	chr3	12743952	12743953	rs112126248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs112126248-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
682	chr3	12753130	12753131	rs13064447	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	3p25.2	intergenic	rs13064447-C	0.454	4E-6	(AA)	0.437	unit decrease	Illumina [at least 5086170] (imputed)	N
682	chr3	12795626	12795627	rs57205460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TMEM40	rs57205460-T	NR	8E-10		0.0246216	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12795626	12795627	rs57205460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TMEM40	rs57205460-T	NR	3E-10		0.0251549	[0.017-0.033] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12795798	12795799	rs539004649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TMEM40	rs539004649-A	NR	8E-9		0.0262544	[0.017-0.035] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12795798	12795799	rs539004649	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TMEM40	rs539004649-A	NR	7E-9		0.0263841	[0.017-0.035] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12803104	12803104	rs573704659	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TMEM40	rs573704659-C	NR	4E-8		0.0161016	[0.01-0.022] unit increase	Affymetrix [319769] (imputed)	N
682	chr3	12803312	12803313	rs11719526	32605384	Choquet H	2020-06-30	Circ Genom Precis Med	Meta-analysis of 26,638 Individuals Identifies Two Genetic Loci Associated with Left Ventricular Ejection Fraction.	Left ventricular ejection fraction	23,153 European ancestry individuals, 1,207 East Asian ancestry individuals, 1,514 Hispanic/Latino individuals, 764 African American individuals	NA	3p25.2	TMEM40	rs11719526-?	NR	3E-8		0.47	[0.31-0.63] unit increase	Affymetrix [10432573] (imputed)	N
682	chr3	12806122	12806123	rs7626624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	TMEM40	rs7626624-A	NR	2E-9		0.0284887	[0.019-0.038] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12806122	12806123	rs7626624	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	TMEM40	rs7626624-A	NR	1E-9		0.0289821	[0.02-0.038] unit decrease	Affymetrix [319769] (imputed)	N
682	chr3	12811627	12811628	rs1003080	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs1003080-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
682	chr3	12815368	12815369	rs34871776	35245370	Roselli C	2022-03-04	Eur Heart J	Genome-wide association study reveals novel genetic loci: a new polygenic risk score for mitral valve prolapse.	Mitral valve prolapse	4,884 European ancestry cases, 434,649 European ancestry controls	NA	3p25.2		rs34871776-T	0.48	1E-9		1.15		NR [NR] (imputed)	N
682	chr3	12819788	12819789	rs28731356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p25.2	NR	rs28731356-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
682	chr3	12830774	12830775	rs1467026	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	3p25.2	CAND2	rs1467026-G	0.39	2E-8		0.51	[0.33-0.69] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
682	chr3	12840933	12840934	rs6810325	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p25.2	CAND2	rs6810325-C	0.63	5E-23		1.08	[1.06-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
682	chr3	12840933	12840934	rs6810325	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatine kinase levels	106,080 Japanese ancestry individuals	NA	3p25.2	CAND2	rs6810325-?	NR	8E-11		0.02931	[0.02-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
682	chr3	12841803	12841804	rs7650482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3p25.2		rs7650482-G	NR	5E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
682	chr3	12841803	12841804	rs7650482	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p25.2		rs7650482-G	NR	9E-17		0.0812	[0.062-0.1] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
682	chr3	12841803	12841804	rs7650482	33961016	Moksnes MR	2021-05-07	Hum Mol Genet	Genome-wide association study of cardiac troponin I in the general population.	High-sensitivity cardiac troponin I concentration	48,115 European ancestry individuals	NA	3p25.2		rs7650482-G	0.6418	4E-10		0.04	[0.02-0.06] unit increase	Illumina [26711992] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	9E-10	(6 ms)	0.0354282	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	5E-9	(-140 ms)	0.0346275	[0.023-0.046] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	5E-10	(-36 ms)	0.0367449	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	4E-9	(-144 ms)	0.0349847	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	4E-9	(-142 ms)	0.0349186	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	4E-8	(-138 ms)	0.0326286	[0.021-0.044] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	4E-10	(-2 ms)	0.037303	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	3E-13	(-158 ms)	0.0428026	[0.031-0.054] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	3E-10	(4 ms)	0.0368832	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	2E-13	(-168 ms)	0.0430801	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	2E-12	(-170 ms)	0.0412865	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	1E-9	(-30 ms)	0.0357693	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	1E-9	(-146 ms)	0.0359735	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.2	CAND2	rs7650482-A	0.350281	1E-13	(-166 ms)	0.0432486	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
682	chr3	12841803	12841804	rs7650482	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p25.2	CAND2	rs7650482-G	0.64	2E-24		1.07	[1.06-1.09]	Illumina [34740186] (imputed)	N
682	chr3	12841803	12841804	rs7650482	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p25.2	CAND2	rs7650482-G	0.65	4E-22	(EA)	1.08	[1.06-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
682	chr3	12842222	12842223	rs4642101	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p25.2		rs4642101-?	NR	1E-10				NR [~ 8900000] (imputed)	N
682	chr3	12842222	12842223	rs4642101	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p25.2	NR	rs4642101-?	NR	7E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
682	chr3	12844071	12844072	rs3889514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p25.2		rs3889514-C	NR	1E-14		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
683	chr3	12846806	12846807	rs4034944	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	3p25.2	CAND2	rs4034944-A	0.3335	3E-6		0.0345	[0.02-0.049] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
683	chr3	12848821	12848822	rs11718898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p25.2	CAND2	rs11718898-T	NR	1E-8		0.0171071	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
683	chr3	12848821	12848822	rs11718898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p25.2	CAND2	rs11718898-T	NR	3E-9		0.0177687	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
683	chr3	12848821	12848822	rs11718898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p25.2		rs11718898-?	NR	2E-15				NR [~ 8900000] (imputed)	N
683	chr3	12852545	12852546	rs11721082	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3p25.2	NR	rs11721082-A	0.9798	8E-6		0.04826716	[0.027-0.069] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
683	chr3	12859003	12859004	rs3732678	30369944	Balakrishnan P	2018-10-12	Front Genet	Genetic Variants Related to Cardiometabolic Traits Are Associated to B Cell Function, Insulin Resistance, and Diabetes Among AmeriCan Indians: The Strong Heart Family Study.	HOMA-B (corrected for HOMA-IR)	1,892 American Indian ancestry individuals	NA	3p25.2	CAND2	rs3732678-?	0.25	1E-7		20.22	unit increase	Illumina [120975] (imputed)	N
683	chr3	12895195	12895196	rs73027016	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.2	NR	rs73027016-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
683	chr3	12923196	12923197	rs2569991	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p25.2	IQSEC1	rs2569991-C	0.22	1E-6	(Age 20-81 years)	0.2	[0.12-0.28] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
683	chr3	12926095	12926096	rs2569993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.2		rs2569993-?	NR	1E-9				NR [~ 8900000] (imputed)	N
683	chr3	12934931	12934932	rs2600223	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.2	NR	rs2600223-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
683	chr3	12955981	12955982	rs2596902	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.2	NA	rs2596902-A	0.6517	2E-10		0.0114	[0.0079-0.0149] unit decrease	NR [~ 27400000] (imputed)	N
683	chr3	12962913	12962914	rs56217149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p25.2	NR	rs56217149-A	0.150714	4E-10		0.017409	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
684	chr3	12989846	12989847	rs892285	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Systolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	3p25.2	IQSEC1	rs892285-?	NR	1E-7		5.29	NR unit decrease	Illumina [up to 1520000] (imputed)	N
684	chr3	13042981	13042982	rs428862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p25.2		rs428862-?	NR	5E-8				NR [~ 8900000] (imputed)	N
684	chr3	13070798	13070799	rs361052	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	3p25.2	intergenic	rs361052-A	NR	8E-7		1.44	[1.25-1.67]	NR [7738399] (imputed)	N
684	chr3	13085917	13085918	rs62239866	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	3p25.2	IQSEC1	rs62239866-A	NR	4E-6		1.079	[1.045- 1.115]	Illumina [6740241] (imputed)	N
684	chr3	13091427	13091428	rs9815898	34177493	Mountford HS	2021-06-09	Front Hum Neurosci	Genome-Wide Association Study of Motor Coordination.	Motor coordination	4,542 European ancestry children	NA	3p25.2	IQSEC1	rs9815898-C	NR	3E-6		0.8142	[0.47-1.16] unit decrease	Illumina [4774020] (imputed)	N
685	chr3	13119066	13119067	rs73020545	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	3p25.2	NR	rs73020545-?	NR	2E-8	(Anaerofilum)	0.204335	[0.13-0.27] unit increase	Illumina [5293637] (imputed)	N
685	chr3	13226944	13226945	rs17037831	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3p25.2	NR	rs17037831-?	NR	7E-6	(AA)	4.72	[3.82-5.62]	Illumina [905956]	N
686	chr3	13250159	13250160	rs573894120	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p25.1		rs573894120-A	0.0029281	8E-6		0.27679	[0.16-0.4] unit decrease	Affymetrix [15580782] (imputed)	N
686	chr3	13252969	13252970	rs77016918	34265127	Inoue Y	2021-07-15	Exp Dermatol	Search for genetic loci involved in the constitution and skin type of a Japanese women using a genome-wide association study.	Response to cosmetics (uncomfortable frequency)	1,108 Japanese ancestry individuals	NA	3p25.1		rs77016918-C	0.065	2E-9		0.224	[0.15-0.3] unit increase	Illumina [6258233] (imputed)	N
686	chr3	13326641	13326642	rs77901643	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p25.1	Intergenic	rs77901643-C	0.8479	4E-9	(MTAG)	0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
686	chr3	13330621	13330622	rs749573	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (inherited effects)	483 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 355 European and other ancestry trios, 187 non-European ancestry trios.	NA	3p25.1	intergenic	rs749573-?	NR	6E-6		1.391275	[1.205543-1.605622]	Illumina [at least 4756722] (imputed)	N
686	chr3	13334142	13334143	rs7648308	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p25.1	Intergenic	rs7648308-T	0.761	3E-9	(MTAG)	0.0091	[0.0062-0.012] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
686	chr3	13345449	13345450	rs580438	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	3p25.1	NR	rs580438-?	NR	2E-6		0.1141	[0.067-0.161] unit increase	Illumina [at least 560000] (imputed)	N
686	chr3	13358129	13358130	rs1048620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.1		rs1048620-?	NR	9E-8				NR [~ 8900000] (imputed)	N
687	chr3	13370673	13370674	rs73018809	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	3p25.1	NUP210	rs73018809-T	0.024	2E-7	(EA)	3.5	[NR]	Illumina [6728637] (imputed)	N
687	chr3	13418382	13418383	rs3796320	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p25.1	Intergenic	rs3796320-A	0.167	2E-8	(MTAG)	0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
687	chr3	13427288	13427300	rs113937631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p25.1		rs113937631-G	NR	9E-10		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
687	chr3	13432580	13432581	rs6442382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p25.1	NR	rs6442382-A	0.43262	5E-10		0.011966	[0.0082-0.0157] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
687	chr3	13433157	13433158	rs9845966	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p25.1	IQSEC1, HDAC11, FBLN2, LINC00620, WNT7A	rs9845966-T	0.442266401968662	5E-8		0.015592072	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
687	chr3	13471500	13471501	rs116554817	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.1	Intergenic	rs116554817-A	0.998	4E-6	(AA)	0.246	unit increase	Illumina [NR] (imputed)	N
687	chr3	13472817	13472818	rs189158807	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.1	Intergenic	rs189158807-T	0.998	4E-6	(AA)	0.246	unit increase	Illumina [NR] (imputed)	N
687	chr3	13481033	13481034	rs116126197	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p25.1	Intergenic	rs116126197-A	0.997	4E-6	(AA)	0.246	unit increase	Illumina [NR] (imputed)	N
687	chr3	13493230	13493231	rs2655211	26278503	Huang C	2015-11-01	Gastroenterology	Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans.	Ulcerative colitis	361 African American cases, 1,797 African American controls	NA	3p25.1	HDAC11	rs2655211-G	NR	7E-6		1.6155089	[1.31-1.99]	Illumina [130241]	N
687	chr3	13496302	13496303	rs385592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p25.1		rs385592-?	NR	1E-7				NR [~ 8900000] (imputed)	N
688	chr3	13540333	13540334	rs2675231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.1	HDAC11	rs2675231-G	NR	2E-11		0.0274943	[0.019-0.036] unit increase	Affymetrix [321016] (imputed)	N
688	chr3	13554850	13554851	rs2597512	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.1	HDAC11	rs2597512-C	NR	4E-8		0.0156536	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
688	chr3	13554885	13554886	rs2630445	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3p25.1		rs2630445-T	0.102033	4E-11		0.0937113	[0.064-0.123] decrease	Affymetrix [11014269] (imputed)	N
688	chr3	13554885	13554886	rs2630445	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	8,620 individuals (<25 years old)	NA	3p25.1		rs2630445-T	NR	3E-6		0.0349	[0.021-0.049] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
688	chr3	13554885	13554886	rs2630445	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	3p25.1		rs2630445-T	NR	4E-12		0.0291	[0.021-0.037] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
688	chr3	13555835	13555836	rs2597513	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p25.1	HDAC11	rs2597513-C	NR	1E-8		0.0288486	[0.019-0.039] unit increase	Affymetrix [321114] (imputed)	N
688	chr3	13555835	13555836	rs2597513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs2597513-?	NR	5E-48				NR [~ 8900000] (imputed)	N
688	chr3	13555835	13555836	rs2597513	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.1	HDAC11	rs2597513-T	0.8966	2E-8	(EA)	0.0329	[0.021-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
688	chr3	13555835	13555836	rs2597513	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p25.1	HDAC11	rs2597513-T	0.8966	2E-6	(EA, women)	0.0361	[0.021-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
688	chr3	13555835	13555836	rs2597513	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p25.1	HDAC11	rs2597513-T	0.9	7E-10		0.036	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
688	chr3	13556080	13556081	rs398091298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p25.1		rs398091298-C	NR	2E-27		0.0297	[0.024-0.035] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
688	chr3	13559199	13559200	rs2731339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.1	HDAC11	rs2731339-C	NR	1E-9		0.0188111	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
688	chr3	13559828	13559829	rs2731340	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p25.1	NR	rs2731340-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
688	chr3	13562574	13562575	rs2731341	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p25.1	FBLN2	rs2731341-C	NR	1E-9		0.0306335	[0.021-0.041] unit increase	Affymetrix [323123] (imputed)	N
688	chr3	13563123	13563124	rs9310427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.1	FBLN2	rs9310427-G	NR	2E-12		0.0336342	[0.024-0.043] unit increase	Affymetrix [321016] (imputed)	N
688	chr3	13571963	13571964	rs59692692	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p25.1	Intergenic	rs59692692-?		6E-6		1.06	[1.03-1.09]	Illumina [7645193] (imputed)	N
688	chr3	13611849	13611850	rs3732668	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3p25.1	NR	rs3732668-C	0.15	4E-6		1.11	[1.07-1.15]	Illumina [8468885] (imputed)	N
688	chr3	13629074	13629075	rs149086677	34404834	Sin S	2021-08-17	Sci Rep	A genome-wide association study of quantitative computed tomographic emphysema in Korean populations.	Emphysema	514 Korean ancestry COPD individuals, 34 Korean ancestry non COPD individuals	NA	3p25.1		rs149086677-?	NR	2E-6		0.9	[0.53-1.27] unit decrease	NR [599248] (imputed)	N
689	chr3	13679854	13679855	rs7596	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p25.1	NR	rs7596-A	0.278493	4E-9		0.0430663	[0.028-0.058] unit decrease	Affymetrix [17914406] (imputed)	N
689	chr3	13719530	13719531	rs6774970	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.1	LINC00620	rs6774970-T	0.531444	1E-10		0.014586405	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
689	chr3	13720096	13720097	rs6775581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p25.1	NR	rs6775581-T	0.551777	2E-12		0.013256	[0.0096-0.0169] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
689	chr3	13726683	13726684	rs6781248	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p25.1		rs6781248-A	NR	2E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
689	chr3	13726839	13726840	rs6781368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs6781368-A	0.578551	1E-10				Affymetrix, Illumina [24653286] (imputed)	N
689	chr3	13726839	13726840	rs6781368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p25.1	NR	rs6781368-A	0.5477	5E-11		0.012195	[0.0086-0.0158] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
689	chr3	13726839	13726840	rs6781368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs6781368-A	0.577598	9E-13				Affymetrix, Illumina [24558453] (imputed)	N
689	chr3	13736999	13737000	rs4450798	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	3p25.1	FBLN2	rs4450798-T	NR	2E-6		1.26	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
689	chr3	13743131	13743132	rs9846232	21368711	Alliey-Rodriguez N	2011-03-02	Psychiatr Genet	Genome-wide association study of personality traits in bipolar patients.	Personality traits in bipolar disorder	1,951 European ancestry cases	NA	3p25.1	BC039529	rs9846232-?	NR	1E-8	(TCI-C3)			Affymetrix [702866]	N
690	chr3	13772753	13772753	rs150673501	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	3p25.1	NR	rs150673501-?	NR	6E-6		0.1156	[0.066-0.166] unit decrease	Illumina [at least 560000] (imputed)	N
690	chr3	13787640	13787641	rs2974389	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3p25.1	LINC00620	rs2974389-A	0.4265	6E-6		0.0116	[0.0067-0.0165] unit increase	Affymetrix [19819130] (imputed)	N
690	chr3	13787640	13787641	rs2974389	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p25.1	LINC00620	rs2974389-A	0.4265	5E-11		0.0155	[0.011-0.02] unit increase	Affymetrix [19819130] (imputed)	N
690	chr3	13787640	13787641	rs2974389	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p25.1	LINC00620	rs2974389-A	0.4265	2E-12		0.0165	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
690	chr3	13792990	13792991	rs6791117	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs6791117-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
690	chr3	13794437	13794438	rs9875578	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	3p25.1	FBLN2, WNT7A	rs9875578-?	0.424	1E-6	(6-month follow-up)			Illumina [3017604] (imputed)	N
690	chr3	13803505	13803506	rs7631252	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Lawsonibacter sp002161175 abundance in stool	5,959 Finnish ancestry individuals	NA	3p25.1		rs7631252-A	0.147868	2E-8		0.0537349	[0.035-0.073] unit decrease	Illumina [7980478] (imputed)	N
690	chr3	13803505	13803506	rs7631252	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Flavonifractor sp002159265 abundance in stool	5,959 Finnish ancestry individuals	NA	3p25.1		rs7631252-A	0.147868	4E-8		0.0557854	[0.036-0.076] unit decrease	Illumina [7980478] (imputed)	N
690	chr3	13805577	13805578	rs7615332	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p25.1	intergenic	rs7615332-A	0.4221	2E-26		0.0203	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
690	chr3	13806134	13806135	rs7638143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p25.1		rs7638143-?	NR	1E-10				NR [~ 8900000] (imputed)	N
690	chr3	13806711	13806712	rs34172992	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs34172992-?		1E-8	(Average across all tracts)			NR [8955960] (imputed)	N
690	chr3	13806711	13806712	rs34172992	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs34172992-?		9E-9	(Average across all tracts)			NR [8955960] (imputed)	N
690	chr3	13809900	13809901	rs4684158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs4684158-?	NR	4E-19				NR [~ 8900000] (imputed)	N
690	chr3	13823341	13823342	rs6793656	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.1	LOC285375	rs6793656-G	0.8567	1E-8		0.2657	[0.17-0.36] mmHg decrease	Affymetrix [NR] (imputed)	N
690	chr3	13823341	13823342	rs6793656	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.1	LINC00620, WNT7A	rs6793656-A		6E-10		0.224	unit decrease	Affymetrix [at least 2696785] (imputed)	N
690	chr3	13823827	13823828	rs6782697	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs6782697-?		2E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
690	chr3	13824477	13824478	rs6797277	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs6797277-?		4E-8	(Average across all tracts)			NR [8955960] (imputed)	N
690	chr3	13826884	13826885	rs59776826	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.1	WNT7A	rs59776826-T	0.1634	8E-10		0.2076	[0.14-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
690	chr3	13832610	13832611	rs4685022	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p25.1	NR	rs4685022-A	0.344	2E-9				NR [9056863] (imputed)	N
690	chr3	13833083	13833084	rs11128657	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p25.1		rs11128657-C	0.42	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
690	chr3	13835086	13835087	rs6442409	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs6442409-?		5E-8	(Body of corpus callosum)			NR [8955960] (imputed)	N
690	chr3	13836295	13836296	rs6442411	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p25.1	NR	rs6442411-?		6E-9	(Average across all tracts)			NR [8955960] (imputed)	N
690	chr3	13848485	13848486	rs7617314	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	3p25.1	NR	rs7617314-?	NR	7E-6		1.5733167	[1.3-1.92]	Illumina [13976150] (imputed)	N
690	chr3	13857968	13857969	rs1124480	23144326	Kim DK	2012-11-09	Am J Respir Crit Care Med	Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.	Chronic obstructive pulmonary disease-related biomarkers	Up to 1,951 European ancestry smokers	NA	3p25.1	WNT7A	rs1124480-C	0.46	9E-6	(IL6)			Illumina [588352]	N
690	chr3	13890484	13890485	rs12492784	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.1	WNT7A	rs12492784-A	0.355934	2E-9		0.013955108	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
690	chr3	13892340	13892341	rs56300905	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p25.1	NR	rs56300905-A	0.282096	2E-12		0.014533	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
691	chr3	13896128	13896129	rs199592697	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	3p25.1	WNT7A	rs199592697-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
691	chr3	13896128	13896129	rs199592697	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	3p25.1	WNT7A	rs199592697-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
691	chr3	13896128	13896129	rs199592697	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	3p25.1	WNT7A	rs199592697-?	9.65997E-5	3E-13				Illumina [~ 244000]	N
691	chr3	13906849	13906850	rs6795744	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	3p25.1	WNT7A	rs6795744-A	0.15	3E-8	(EA)	0.006	[0.0038-0.0082] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
691	chr3	13908070	13908071	rs9864031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p25.1		rs9864031-?	NR	2E-12				NR [~ 8900000] (imputed)	N
691	chr3	13908070	13908071	rs9864031	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p25.1		rs9864031-?	NR	5E-17				NR [~ 8900000] (imputed)	N
691	chr3	13919309	13919310	rs114106861	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs114106861-?	NR	3E-9				NR [~ 8900000] (imputed)	N
691	chr3	13947503	13947504	rs6778731	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p25.1	WNT7A	rs6778731-T	0.589	9E-11		0.0017	[0.0011-0.0023] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
691	chr3	13961156	13961157	rs9875589	22116950	Schuh-Huerta SM	2011-11-24	Hum Reprod	Genetic variants and environmental factors associated with hormonal markers of ovarian reserve in Caucasian and African American women.	Ovarian reserve	232 European ancestry female individuals, 200 African American female individuals	NA	3p25.1	TPRXL	rs9875589-?		4E-6	(AMH levels - AA)			Affymetrix [677261]	N
692	chr3	14108145	14108146	rs114176875	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p25.1	NR	rs114176875-G	0.02439	1E-10	(HIST1H1C)	0.02494	NR unit increase	Illumina [1671387] (imputed)	N
692	chr3	14116409	14116410	rs9681156	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs9681156-A	0.338181	4E-12				Affymetrix, Illumina [24332387] (imputed)	N
692	chr3	14144633	14144634	rs2607733	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p25.1	intergenic	rs2607733-T	0.417801	2E-7		0.007537	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
693	chr3	14158724	14158725	rs2607748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p25.1	NR	rs2607748-C	NR	4E-11		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
693	chr3	14158724	14158725	rs2607748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p25.1		rs2607748-?	NR	3E-8				NR [~ 8900000] (imputed)	N
693	chr3	14169078	14169079	rs7632937	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p25.1	TMEM43	rs7632937-T	0.963008	4E-9		0.0285807	[0.019-0.038] unit decrease	NR [13737936] (imputed)	N
693	chr3	14183409	14183410	rs1043943	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	3p25.1	TMEM43	rs1043943-T	NR	4E-8		0.1464	[0.09-0.203] unit increase	Affymetrix, Illumina [NR] (imputed)	N
693	chr3	14207524	14207525	rs113043636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p25.1	XPC	rs113043636-T	NR	2E-8		0.0561712	[0.037-0.076] unit decrease	Affymetrix [321016] (imputed)	N
693	chr3	14207524	14207525	rs113043636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs113043636-?	NR	5E-20				NR [~ 8900000] (imputed)	N
693	chr3	14215156	14215157	rs1902658	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs1902658-G	NR	5E-6		4.5645804	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
693	chr3	14226871	14226871	rs138222355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p25.1	LSM3	rs138222355-CA	0.252124	4E-9		0.01499582	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
693	chr3	14241980	14241981	rs11925757	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	3p25.1	NR	rs11925757-G	NR	3E-6		0.1324	[0.077-0.188] unit increase	Affymetrix, Illumina [NR] (imputed)	N
693	chr3	14253946	14253947	rs4685080	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs4685080-C	NR	2E-6		4.8103285	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
693	chr3	14253946	14253947	rs4685080	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs4685080-C	NR	2E-6		4.769674	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
693	chr3	14255766	14255767	rs4575884	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p25.1		rs4575884-C	0.295007	2E-8		0.0123314	[0.008-0.0166] unit decrease	Illumina [13479295] (imputed)	N
693	chr3	14255766	14255767	rs4575884	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p25.1	LSM3, LINC01267	rs4575884-?	NR	2E-9		0.018682629	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
693	chr3	14257708	14257709	rs62232870	33677556	Garnier S	2021-03-03	Eur Heart J	Genome-wide association analysis in dilated cardiomyopathy reveals two new players in systolic heart failure on chromosomes 3p25.1 and 22q11.23.	Dilated cardiomyopathy	2,651 European ancestry cases, 4,329 European ancestry controls	584 European ancestry cases, 963 European ancestry controls	3p25.1	LSM3	rs62232870-A	0.23	5E-13		1.36	[1.25-1.48]	Illumina [9152885] (imputed)	N
693	chr3	14260416	14260417	rs11721007	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p25.1		rs11721007-A	0.335499	3E-16		0.019261207	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
693	chr3	14272759	14272760	rs73028848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p25.1		rs73028848-?	NR	4E-11				NR [~ 8900000] (imputed)	N
693	chr3	14272913	14272914	rs4684185	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p25.1	NR	rs4684185-T	0.340437	5E-10		0.012671	[0.0087-0.0167] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
693	chr3	14274450	14274451	rs6807275	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Dilated cardiomyopathy (MTAG)	5,521 cases, 397,323 controls	NA	3p25.1	LSM3	rs6807275-G	0.659	9E-9		1.0828938	1.05-1.11	Affymetrix, Illumina [up to 7736182] (imputed)	N
693	chr3	14275758	14275759	rs6442433	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p25.1	LSM3	rs6442433-C	0.79	2E-19		0.71	[0.55-0.87] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.777353	7E-10	(-24 ms)	0.0394431	[0.026-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.777353	6E-12	(-22 ms)	0.0453128	[0.032-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.777353	3E-15	(-16 ms)	0.0532218	[0.04-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.777353	2E-15	(-18 ms)	0.053023	[0.04-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.777353	1E-13	(-20 ms)	0.0492067	[0.036-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
693	chr3	14280869	14280870	rs4685090	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3p25.1	LSM3	rs4685090-G	0.7817	2E-17		0.684	[0.53-0.84] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
694	chr3	14287149	14287150	rs9855896	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3p25.1	LSM3	rs9855896-G	0.22158599999999995	2E-10		0.023247	[0.016-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
694	chr3	14297303	14297304	rs9843704	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	3p25.1	SLC6A6	rs9843704-C	0.783416	1E-9		0.320659	[0.22-0.42] unit increase	Affymetrix [8590397] (imputed)	N
694	chr3	14306948	14306949	rs9864379	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (unknown genus id.1000001215)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs9864379-T	NR	5E-8		5.4638667	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
694	chr3	14306948	14306949	rs9864379	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (unknown family id.1000001214)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs9864379-T	NR	5E-8		5.4638667	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
694	chr3	14306948	14306949	rs9864379	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (order Gastranaerophilales id.1591)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p25.1		rs9864379-T	NR	5E-8		5.4638667	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
694	chr3	14324588	14324589	rs35061271	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p25.1	intergenic	rs35061271-?	NR	9E-6		0.181	[0.1-0.26] unit decrease	Illumina [at least 13000000] (imputed)	N
694	chr3	14383631	14383632	rs6794796	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p25.1	LSM3, SLC6A6	rs6794796-A	0.2897	3E-10		1.0256227		Affymetrix [11880941] (imputed)	N
694	chr3	14385115	14385116	rs12163644	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma	590 European ancestry cases, 5,199 European ancestry controls	NA	3p25.1		rs12163644-A	0.13	2E-6		1.45	[1.24-1.7]	Illumina [10258281] (imputed)	N
694	chr3	14385115	14385116	rs12163644	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Choroidal melanoma	438 European ancestry cases, 5,199 European ancestry controls	NA	3p25.1		rs12163644-A	0.13	1E-6		1.55		Illumina [10258281] (imputed)	N
694	chr3	14400609	14400610	rs4685141	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs4685141-?	NR	6E-14				NR [~ 8900000] (imputed)	N
694	chr3	14400649	14400650	rs57515741	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p25.1	LINC01267, SLC6A6	rs57515741-?	NR	9E-8		0.015274796	[0.0097-0.0209] unit decrease	Illumina [27896057] (imputed)	N
695	chr3	14420874	14420881	rs201111036	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3p25.1	NR	rs201111036-C	0.909892	1E-13		0.0167191	[0.012-0.021] unit increase	Affymetrix [16578495] (imputed)	N
695	chr3	14423059	14423060	rs62231822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p25.1	NR	rs62231822-C	0.901557	6E-26		0.0489104	[0.04-0.058] unit increase	Affymetrix [16580851] (imputed)	N
695	chr3	14423059	14423060	rs62231822	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p25.1	NR	rs62231822-C	0.901312	8E-12		0.0288713	[0.021-0.037] unit increase	Affymetrix [16585745] (imputed)	N
695	chr3	14446889	14446890	rs1156567	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p25.1	NR	rs1156567-G	0.126634	2E-10		0.01841	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
695	chr3	14467262	14467263	rs2341967	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	3p25.1	NR	rs2341967-A	0.27	5E-7		0.006	[0.004-0.008] unit decrease	Affymetrix [NR] (imputed)	N
695	chr3	14480777	14480778	rs6790433	23006423	Niu N	2012-09-24	BMC Cancer	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.	Response to taxane treatment (docetaxel)	96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines	NA	3p25.1	SLC6A6	rs6790433-?	NR	1E-6				Affymetrix, Illumina [~ 1300000]	N
695	chr3	14482676	14482677	rs6442457	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p25.1		rs6442457-?	NR	5E-8				NR [~ 8900000] (imputed)	N
695	chr3	14506797	14506798	rs7632925	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	3p25.1	SLC6A6	rs7632925-A	0.7881	9E-6		0.1455	[0.081-0.21] unit increase	NR [NR] (imputed)	N
695	chr3	14530720	14530721	rs9036	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p25.1	GRIP2	rs9036-?	0.187	3E-6	(PAL6)			Illumina [475971]	N
696	chr3	14558454	14558455	rs150652797	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UCG-010 sp003150215 abundance in stool	5,959 Finnish ancestry individuals	NA	3p25.1		rs150652797-A	0.0264052	2E-8		0.22411	[0.15-0.3] unit increase	Illumina [7980478] (imputed)	N
696	chr3	14562126	14562127	rs1106333	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (ER negative treated with chemotherapy)	6,852 European ancestry individuals	NA	3p25.1		rs1106333-?	NR	6E-8		1.68	[1.39-2.03]	NR [10000000] (imputed)	N
696	chr3	14607606	14607607	rs11709369	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p25.1	NR	rs11709369-?	NR	5E-8				Affymetrix [NR]	N
696	chr3	14678298	14678299	rs3846121	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	3p25.1	NR	rs3846121-?	0.2152	2E-6		0.042923	[0.025-0.061] unit increase	Affymetrix, Illumina [4840740] (imputed)	N
696	chr3	14678298	14678299	rs3846121	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	3p25.1	NR	rs3846121-?	0.2152	8E-6		0.059753	NR unit increase	Affymetrix, Illumina [4840740] (imputed)	N
697	chr3	14714637	14714638	rs79407237	28076899	Taylor KE	2017-01-11	Arthritis Rheumatol	Genome-Wide Association Analysis Reveals Genetic Heterogeneity of Sjogren's Syndrome According to Ancestry.	Sjogren's syndrome	585 European ancestry cases, 1,546 European ancestry controls	NA	3p25.1	GRIP2, CCDC174	rs79407237-?		5E-6		1.6393442	[1.33-2.04]	Illumina [1444884]	N
697	chr3	14725667	14725668	rs12488352	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled tooth surfaces)	109 African American adults	NA	3p25.1	NR	rs12488352-?		3E-6		12.68	[7.63-17.73] unit increase	Illumina [~ 4900000] (imputed)	N
697	chr3	14725667	14725668	rs12488352	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	3p25.1	NR	rs12488352-?		3E-6		3.736	[2.24-5.23] unit increase	Illumina [~ 4900000] (imputed)	N
697	chr3	14728816	14728817	rs188945687	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	3p25.1		rs188945687-T	0.0212443	2E-9		0.0762102	[0.051-0.101] unit increase	Illumina [7980478] (imputed)	N
697	chr3	14728816	14728817	rs188945687	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	3p25.1		rs188945687-T	0.0212443	7E-9		0.0900573	[0.06-0.121] unit increase	Illumina [7980478] (imputed)	N
697	chr3	14801741	14801742	rs76226780	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/3-day periodicity)	90,515 individuals	NA	3p25.1	C3orf20	rs76226780-C	NR	4E-10		0.521	[0.36-0.69] unit increase	NR [11024754] (imputed)	N
697	chr3	14803108	14803109	rs141708090	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	3p25.1	C3orf20	rs141708090-T	2.0E-4	6E-7		3.6		Affymetrix [at least 751455]	N
698	chr3	14832505	14832506	rs79726092	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3p25.1	RP11-95M5.1	rs79726092-A	0.9694	3E-6		0.1889	[0.11-0.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
698	chr3	14837472	14837473	rs1689549	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3p25.1	FGD5	rs1689549-?	0.10709999999999997	4E-9		0.96	[0.95-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
698	chr3	14855156	14855157	rs60155001	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3p25.1		rs60155001-A	0.898031	3E-13		0.0818944	[0.059-0.105] increase	Affymetrix [NR]	N
698	chr3	14855156	14855157	rs60155001	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3p25.1		rs60155001-A	0.898434	1E-10		0.0774218	[0.053-0.102] increase	Affymetrix [NR]	N
698	chr3	14856837	14856838	rs731580	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p25.1	NR	rs731580-?		2E-6	(EA)			Illumina [~ 5140000] (imputed)	N
698	chr3	14856837	14856838	rs731580	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p25.1	NR	rs731580-?		1E-6	(EA)			Illumina [~ 5140000] (imputed)	N
698	chr3	14873213	14873214	rs13070730	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	3p25.1	FGD5	rs13070730-?	NR	5E-6				Illumina [up to 10421983] (imputed)	N
698	chr3	14877573	14877574	rs1077534	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3p25.1	FGD5	rs1077534-A	0.866	3E-10		0.059	[0.041-0.077] unit decrease	Affymetrix [7947838] (imputed)	N
698	chr3	14878829	14878830	rs6766170	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.1	FGD5	rs6766170-A	0.4843	2E-8		0.1423	[0.093-0.192] mmHg decrease	Affymetrix [NR] (imputed)	N
698	chr3	14884408	14884409	rs60573957	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3p25.1	FGD5	rs60573957-T	0.507223	1E-8		0.017993	[0.012-0.024] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
698	chr3	14886686	14886687	rs4395384	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	3p25.1	FGD5	rs4395384-?	NR	2E-9		0.0741962	[0.05-0.098] unit decrease	Illumina [19707525] (imputed)	N
698	chr3	14891754	14891755	rs12108073	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p25.1	NR	rs12108073-A	0.01568	1E-8	(AKR1D1)	0.611	NR unit increase	Illumina [1671387] (imputed)	N
698	chr3	14895104	14895105	rs4684242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	3p25.1		rs4684242-C	0.353439	1E-11		0.0236988	[0.017-0.031] unit increase	Illumina [13477770] (imputed)	N
698	chr3	14895104	14895105	rs4684242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	3p25.1		rs4684242-C	NR	3E-8		0.0437	[0.028-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
698	chr3	14895104	14895105	rs4684242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p25.1		rs4684242-C	NR	2E-8		0.0331	[0.022-0.045] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
698	chr3	14895104	14895105	rs4684242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	3p25.1		rs4684242-C	0.35344	1E-12		0.0253358	[0.018-0.032] unit increase	Illumina [13477767] (imputed)	N
698	chr3	14895104	14895105	rs4684242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	3p25.1		rs4684242-C	0.353439	5E-10		0.0226488	[0.016-0.03] unit increase	Illumina [13477770] (imputed)	N
698	chr3	14895104	14895105	rs4684242	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs4684242-C	0.35	3E-11	(Japanese)	0.5196	[0.37-0.67] unit increase	Illumina [6200000] (imputed)	N
698	chr3	14895104	14895105	rs4684242	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs4684242-C	0.3541	2E-12	(Japanese)	0.39	[0.28-0.5] unit increase	Illumina [6200000] (imputed)	N
698	chr3	14895104	14895105	rs4684242	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p25.1	FGD5	rs4684242-C	0.3541	2E-11	(Japanese)	0.0935	[0.066-0.121] unit increase	Illumina [6200000] (imputed)	N
698	chr3	14895104	14895105	rs4684242	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs4684242-C	0.3541	8E-11	(Japanese)	0.3241	[0.23-0.42] unit increase	Illumina [6200000] (imputed)	N
698	chr3	14895104	14895105	rs4684242	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	3p25.1	FGD5	rs4684242-?	NR	1E-10		0.02556	[0.018-0.033] unit increase	Illumina [6108953] (imputed)	N
698	chr3	14895104	14895105	rs4684242	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	3p25.1	FGD5	rs4684242-?	NR	6E-12		0.02744	[0.02-0.035] unit increase novel	Illumina [6108953] (imputed)	N
698	chr3	14895104	14895105	rs4684242	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	3p25.1	FGD5	rs4684242-?	NR	6E-10		0.02449	[0.017-0.032] unit increase	Illumina [6108953] (imputed)	N
698	chr3	14899393	14899394	rs35462537	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3p25.1	FGD5	rs35462537-?	NR	3E-17		0.0428552	[0.033-0.053] unit decrease	Illumina [4804024] (imputed)	N
698	chr3	14901524	14901525	rs13079221	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3p25.1	FGD5	rs13079221-C	0.4336	2E-10		0.0405	[0.028-0.053] unit increase	NR [8041861] (imputed)	N
698	chr3	14905721	14905727	rs549156584	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 142,336 Japanese ancestry controls	NA	3p25.1	FGD5	rs549156584-?	NR	6E-6		0.236974	[0.13-0.34] unit increase	Illumina [19707525] (imputed)	N
698	chr3	14906733	14906734	rs2131570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p25.1		rs2131570-?	NR	5E-9				NR [~ 8900000] (imputed)	N
698	chr3	14910519	14910520	rs2342883	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Hypertension	11,863 African American cases, 8,663 Hispanic/Latino cases, 3,102 Asian ancestry cases, 2,645 Native Hawaiian ancestry cases, 342 Native American ancestry cases, 508 cases, 5,289 African American controls, 13,273 Hispanic/Latino controls, 1,561 Asian ancestry controls, 1,060 Native Hawaiian ancestry controls, 293 Native American ancestry controls, 542 controls	NA	3p25.1	FGD5	rs2342883-?	NR	2E-8		0.093572	[0.061-0.126] unit decrease	Illumina [28263875] (imputed)	N
698	chr3	14911652	14911671	rs59055982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p25.1		rs59055982-G	NR	6E-15		0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
698	chr3	14911652	14911671	rs59055982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p25.1		rs59055982-G	NR	1E-13		0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
698	chr3	14911652	14911671	rs59055982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p25.1		rs59055982-G	NR	1E-13		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
698	chr3	14923229	14923230	rs13062241	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	3p25.1	FGD539	rs13062241-?	NR	5E-9				NR [~ 24000000] (imputed)	N
698	chr3	14926228	14926229	rs13080281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs13080281-T	0.704828	2E-12				Affymetrix, Illumina [24332387] (imputed)	N
698	chr3	14926228	14926229	rs13080281	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p25.1	NR	rs13080281-T	0.753437	9E-15		0.016738	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
698	chr3	14926228	14926229	rs13080281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p25.1		rs13080281-?	NR	2E-13				NR [~ 8900000] (imputed)	N
698	chr3	14926350	14926351	rs34991912	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p25.1		rs34991912-C	NR	3E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
698	chr3	14926350	14926351	rs34991912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p25.1		rs34991912-?	NR	6E-19				NR [~ 8900000] (imputed)	N
698	chr3	14926350	14926351	rs34991912	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3p25.1	FGD5	rs34991912-T	0.4344	3E-11		0.0379	[0.027-0.049] unit increase	Affymetrix [at least 7947838] (imputed)	N
698	chr3	14928076	14928077	rs748431	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3p25.1	FGD5	rs748431-G	0.398231	4E-8		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
698	chr3	14928076	14928077	rs748431	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	3p25.1	FGD5	rs748431-G	0.36	3E-8		1.05	[1.03-1.07]	Affymetrix [9061845] (imputed)	N
698	chr3	14929509	14929509	rs5846851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p25.1	FGD5	rs5846851-CA	0.65509	7E-11		0.015206958	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr3	14929509	14929509	rs5846851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p25.1	FGD5	rs5846851-CA	0.655083	1E-15		0.018688243	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr3	14929509	14929509	rs5846851	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p25.1	FGD5	rs5846851-CA	0.655111	2E-13		0.017126868	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
698	chr3	14929520	14929520	rs397732825	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p25.1		rs397732825-CA	NR	5E-10		0.0125	[0.0086-0.0164] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
698	chr3	14934800	14934801	rs4234532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs4234532-A	0.485328	9E-18				Affymetrix, Illumina [24653286] (imputed)	N
698	chr3	14934800	14934801	rs4234532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p25.1	NR	rs4234532-A	0.562242	5E-20		0.017315	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
698	chr3	14934800	14934801	rs4234532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs4234532-A	0.4869	1E-14				Affymetrix, Illumina [24558453] (imputed)	N
698	chr3	14934800	14934801	rs4234532	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p25.1	NR	rs4234532-A	0.562318	3E-17		0.015987	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
698	chr3	14939336	14939337	rs58244401	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p25.1	NR	rs58244401-A	0.337	3E-13	(East Asian)	0.0902	[0.066-0.115] unit increase	Illumina [6200000] (imputed)	N
699	chr3	14943964	14943965	rs11925504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	3p25.1		rs11925504-A	NR	2E-9		0.0569	[0.038-0.076] unit decrease	Affymetrix, Illumina [25841367] (imputed)	N
699	chr3	14943964	14943965	rs11925504	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	3p25.1		rs11925504-A	0.213189411	2E-8		0.09491761	[0.062-0.128] unit decrease	Illumina [13427135] (imputed)	N
699	chr3	14947132	14947133	rs293914	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	3p25.1	FGD5	rs293914-G	0.13	4E-8		1.07	[1.06-1.08]	Illumina [5167567] (imputed)	N
699	chr3	14947423	14947424	rs78793397	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	NR	rs78793397-A	0.6811	1E-16	(East Asian)	0.6088	[0.46-0.75] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14947423	14947424	rs78793397	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	NR	rs78793397-A	0.6811	3E-17	(East Asian)	0.4391	[0.34-0.54] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14947423	14947424	rs78793397	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	NR	rs78793397-A	0.6811	1E-14	(East Asian)	0.3599	[0.27-0.45] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14954410	14954411	rs12630213	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs12630213-T	0.51	3E-6	(Japanese)	0.3911	[0.23-0.56] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14954410	14954411	rs12630213	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs12630213-T	0.505	1E-6	(Japanese)	0.29	[0.17-0.41] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14954410	14954411	rs12630213	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p25.1	FGD5	rs12630213-T	0.505	2E-7	(Japanese)	0.0767	[0.048-0.106] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14954410	14954411	rs12630213	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p25.1	FGD5	rs12630213-T	0.505	9E-6	(Japanese)	0.2383	[0.13-0.34] unit decrease	Illumina [6200000] (imputed)	N
699	chr3	14954410	14954411	rs12630213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p25.1	FGD5	rs12630213-C		1E-6		0.276	unit increase	Affymetrix [at least 2696785] (imputed)	N
699	chr3	14954410	14954411	rs12630213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.1	FGD5	rs12630213-C		6E-12		0.276	unit increase	Affymetrix [at least 2696785] (imputed)	N
699	chr3	14954410	14954411	rs12630213	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p25.1	FGD5	rs12630213-C		5E-10		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
699	chr3	14954548	14954549	rs12635574	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p25.1	FGD5	rs12635574-A	0.249	4E-13		0.282	[0.21-0.36] mmHg increase	Affymetrix [NR] (imputed)	N
699	chr3	14958125	14958126	rs11128722	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p25.1	FGD5	rs11128722-A	0.563	4E-11		0.3103	[0.22-0.4] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
699	chr3	14958125	14958126	rs11128722	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p25.1	FGD5	rs11128722-A	0.563	4E-11		0.1732	[0.12-0.23] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
699	chr3	14959823	14959824	rs13099220	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3p25.1	FGD5	rs13099220-T	0.218188697	5E-6		0.1505	[0.086-0.215] unit decrease	Affymetrix [~ 9800000] (imputed)	N
699	chr3	14960169	14960170	rs293916	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p25.1		rs293916-?	NR	1E-11				NR [~ 8900000] (imputed)	N
699	chr3	14964636	14964637	rs148880716	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3p25.1	FGD5	rs148880716-A	0.001	4E-8		0.503	[0.32-0.68] unit increase	Affymetrix [7947838] (imputed)	N
699	chr3	15016270	15016271	rs113362793	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NR2C2	rs113362793-?	NR	3E-9	(female)	2.54684	[NR] unit decrease	Affymetrix [NR] (imputed)	N
700	chr3	15104941	15104942	rs76926871	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MRPS25	rs76926871-?	NR	6E-9	(female)	2.50421	[NR] unit decrease	Affymetrix [NR] (imputed)	N
700	chr3	15172434	15172435	rs13078239	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p25.1		rs13078239-?	NR	2E-8				Affymetrix [NR] (imputed)	N
700	chr3	15173477	15173478	rs17081778	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p25.1		rs17081778-?	NR	1E-8				Affymetrix [NR] (imputed)	N
701	chr3	15210775	15210776	rs56164115	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p25.1	NR	rs56164115-T	0.01394	3E-8	(SDHB)	0.1597	NR unit increase	Illumina [1671387] (imputed)	N
701	chr3	15295363	15295364	rs1318937	22488850	Zuo L	2012-04-04	Am J Med Genet B Neuropsychiatr Genet	Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.	Alcohol and nicotine co-dependence	818 European ancestry cases, 1,396 European ancestry controls, 449 African American cases, 480 African American controls	NA	3p25.1	SH3BP5, NR2C2, ZFYVE20	rs1318937-?	NR	4E-7				Illumina [805814]	N
701	chr3	15295363	15295364	rs1318937	21956439	Zuo L	2011-09-28	Neuropsychopharmacology	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Alcohol dependence	1,409 European ancestry cases, 1,518 European ancestry controls, 681 African American cases, 508 African American controls	NA	3p25.1	SH3BP5	rs1318937-?	NR	3E-6	(EA + AA)			Illumina [805814]	N
701	chr3	15317254	15317255	rs9837576	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p25.1	CAPN7	rs9837576-?	NR	2E-6	(guanosine monophosphate)	3.123539	[1.85-4.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
702	chr3	15362621	15362622	rs139690209	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	3p25.1	SH3BP5	rs139690209-?		1E-6				Illumina [2668805]	N
702	chr3	15404202	15404203	rs13085837	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	3p25.1	SH3BP5	rs13085837-A	0.12	1E-6	(Right HG area)	7.41	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
702	chr3	15440555	15440556	rs6442522	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	3p25.1	NR	rs6442522-?	NR	5E-6		0.05	[NR] mg/dl increase in uric acid levels	Affymetrix [361034]	N
703	chr3	15495405	15495406	rs139574075	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Pancreatic cancer	768 White British ancestry cases, 264,559 White British ancestry controls	NA	3p25.1		rs139574075-?	NR	2E-7		14.9472	[13.92-15.97]	NR [663102]	N
703	chr3	15502680	15502681	rs7609897	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p25.1	COLQ, METTL6	rs7609897-T	0.214190295958241	3E-18		0.0059783	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
703	chr3	15502680	15502681	rs7609897	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticulitis	2,764 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	3p25.1	COLQ	rs7609897-G	0.753	2E-9		1.25	[1.16-1.35]	Illumina [32463443] (imputed)	N
703	chr3	15502680	15502681	rs7609897	28585551	Sigurdsson S	2017-06-06	Nat Commun	Sequence variants in ARHGAP15, COLQ and FAM155A associate with diverticular disease and diverticulitis.	Diverticular disease	5,426 Icelandic ancestry cases, 245,951 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	5,970 Danish ancestry cases, 3,020 Danish ancestry controls	3p25.1	COLQ	rs7609897-G	0.753	2E-10		1.1494253	[1.1-1.2]	Illumina [32463443] (imputed)	N
703	chr3	15549966	15549967	rs13100619	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p25.1	BTD	rs13100619-A	0.96171875	4E-122	(BTD, 9269_7_3)	1.4308988	[1.32-1.55] unit increase	Illumina [> 1000000] (imputed)	N
703	chr3	15576103	15576104	rs148909372	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	3p25.1	NR	rs148909372-?	NR	7E-6		0.076213	[0.043-0.109] unit increase	Affymetrix [9658292] (imputed)	N
703	chr3	15592560	15592561	rs28818616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium HDL	115,082 European ancestry individuals	NA	3p25.1		rs28818616-T	0.650232	5E-8		0.0220507	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
703	chr3	15592560	15592561	rs28818616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in HDL	115,082 European ancestry individuals	NA	3p25.1		rs28818616-T	0.650232	4E-8		0.0215481	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
703	chr3	15592560	15592561	rs28818616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in HDL	115,082 European ancestry individuals	NA	3p25.1		rs28818616-T	0.650232	3E-8		0.0217586	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
703	chr3	15592560	15592561	rs28818616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium HDL particles	115,082 European ancestry individuals	NA	3p25.1		rs28818616-T	0.650232	3E-8		0.0221908	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
703	chr3	15592560	15592561	rs28818616	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	3p25.1		rs28818616-T	0.650232	5E-8		0.0218617	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
704	chr3	15628448	15628449	rs2068906	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p25.1	BTD	rs2068906-?	NR	5E-6	(asymmetric dimethylarginine)	4.6671824	[2.67-6.67] unit decrease	Affymetrix [at least 2500000] (imputed)	N
704	chr3	15635115	15635116	rs73148185	29878111	Kocarnik JM	2018-08-01	Hum Mol Genet	Discovery, fine-mapping, and conditional analyses of genetic variants associated with C-reactive protein in multiethnic populations using the Metabochip in the Population Architecture using Genomics and Epidemiology (PAGE) study.	C-reactive protein levels	15,895 Hispanic individuals, 12,817 African American individuals, 1,252 Asian or Oceanian ancestry individuals, 539 Native American ancestry individuals	NA	3p25.1	HACL1	rs73148185-A	0.0052	1E-31		0.3286	[0.27-0.38] unit increase	Illumina [~ 200000]	N
704	chr3	15648003	15648004	rs7651039	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	3p25.1	intergenic	rs7651039-C	0.54	2E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
704	chr3	15656463	15656464	rs71627145	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTD	5,367 Icelandic ancestry individuals	NA	3p25.1		rs71627145-G	0.02847	3E-126		1.28287	[1.18-1.39] unit decrease	Illumina [7506463] (imputed)	N
704	chr3	15663059	15663060	rs2455826	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	3p25.1	BTD	rs2455826-?	NR	6E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
704	chr3	15675161	15675162	rs11915606	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Moderate or severe diarrhoea in darapladib-treated cardiovascular disease (time to event)	212 European ancestry cases	NA	3p25.1	BTD	rs11915606-G	0.0071	4E-8		7.23	[3.58-14.62]	Affymetrix, Illumina [9334585] (imputed)	N
704	chr3	15681939	15681940	rs2455821	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p25.1	BTD	rs2455821-C	0.72945	2E-9		0.0134157	[0.009-0.0178] unit decrease	Affymetrix [NR] (imputed)	N
704	chr3	15687897	15687898	rs57114474	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p25.1	BTD	rs57114474-A	0.0834136399193333	2E-7		0.0051055	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
704	chr3	15697282	15697283	rs13092272	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p25.1	BTD	rs13092272-T	0.959392	3E-8	(-32 ms)	0.0746297	[0.047-0.102] unit increase	Affymetrix [10000000] (imputed)	N
704	chr3	15701183	15701184	rs2455799	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p25.1	NR	rs2455799-T	0.6696	4E-11		0.0119	[0.0084-0.0154] unit decrease	NR [~ 27400000] (imputed)	N
704	chr3	15701183	15701184	rs2455799	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p25.1	intergenic	rs2455799-T	0.6694	4E-13		0.02783384	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
704	chr3	15702310	15702311	rs79998276	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BTD	5,367 Icelandic ancestry individuals	NA	3p25.1		rs79998276-A	0.1115	1E-7		0.157198	[0.099-0.216] unit decrease	Illumina [7506463] (imputed)	N
704	chr3	15702640	15702641	rs6772763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p25.1		rs6772763-C	NR	5E-8		0.0095	[0.0062-0.0128] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
704	chr3	15702640	15702641	rs6772763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p25.1		rs6772763-C	NR	2E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
704	chr3	15706123	15706124	rs924753	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p25.1	NR	rs924753-G	0.4649	1E-11		0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
704	chr3	15720121	15720122	rs7612295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs7612295-G	0.18063	1E-15				Affymetrix, Illumina [24588908] (imputed)	N
705	chr3	15737688	15737689	rs2470548	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p25.1	ANKRD28	rs2470548-A	0.598998	4E-12		0.02851491	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
705	chr3	15741388	15741389	rs4465929	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p25.1	NR	rs4465929-C	0.5956	5E-11		0.0304	[0.021-0.039] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
705	chr3	15743843	15743844	rs2455793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p25.1	NR	rs2455793-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
705	chr3	15743843	15743844	rs2455793	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p25.1	NA	rs2455793-A	0.4165	1E-9		0.01	[0.0069-0.0131] unit increase	NR [~ 27400000] (imputed)	N
705	chr3	15771371	15771372	rs2455848	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p25.1	NA	rs2455848-T	0.3137	2E-12		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
705	chr3	15784890	15784891	rs2700010	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p25.1	NR	rs2700010-A	0.332996	3E-42				Affymetrix, Illumina [17210439] (imputed)	N
705	chr3	15819504	15819505	rs75169866	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	3p25.1	NR	rs75169866-?	NR	2E-6		0.080943	[0.048-0.114] unit increase	Affymetrix [9658292] (imputed)	N
705	chr3	15826108	15826108	rs146712725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p25.1		rs146712725-GACCAATAGGAACAAAA	NR	4E-11		0.0139	[0.0098-0.018] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
705	chr3	15832416	15832417	rs4685260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p25.1		rs4685260-?	NR	4E-9				NR [~ 8900000] (imputed)	N
705	chr3	15833652	15833653	rs1584324	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p25.1	ANKRD28	rs1584324-T	0.678198	1E-34		0.05289541	[0.044-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
705	chr3	15846010	15846011	rs13097947	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p25.1	ANKRD28	rs13097947-T	0.350689	4E-15		0.0159709	[0.012-0.02] unit decrease	Affymetrix [NR] (imputed)	N
705	chr3	15846010	15846011	rs13097947	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p25.1	ANKRD28	rs13097947-T	0.350757	3E-11		0.013955	[0.0099-0.0181] unit decrease	Affymetrix [NR] (imputed)	N
705	chr3	15846010	15846011	rs13097947	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3p25.1	ANKRD28	rs13097947-C	0.6567	1E-12		0.02712833	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
705	chr3	15846065	15846066	rs13075443	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p25.1	NR	rs13075443-A	0.66	1E-8		0.0111	[0.0072-0.015] unit decrease	NR [NR]	N
705	chr3	15853660	15853661	rs4685262	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p25.1		rs4685262-A	NR	3E-13		0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
705	chr3	15853672	15853682	rs142876410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p25.1		rs142876410-A	NR	5E-10		0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
706	chr3	15865450	15865451	rs141410014	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p25.1	ANKRD28	rs141410014-G	0.079519	1E-9		0.025097096	[0.017-0.033] unit increase	Affymetrix [93095623] (imputed)	N
706	chr3	15869856	15869857	rs6807029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p25.1	ANKRD28	rs6807029-C	0.678463	2E-20		0.022326976	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
706	chr3	15874481	15874482	rs11128761	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p25.1	NR	rs11128761-T	0.080798	3E-15		0.026362	[0.02-0.033] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
706	chr3	15882244	15882245	rs6773547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p25.1	NR	rs6773547-C	0.321157	4E-43		0.027988	[0.024-0.032] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
706	chr3	15937126	15937127	rs73030679	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	3p25.1	NR	rs73030679-?	NR	7E-6		0.075113	[0.042-0.108] unit increase	Affymetrix [9658292] (imputed)	N
706	chr3	15962610	15962611	rs1466245	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p25.1	NR	rs1466245-T	0.07317	4E-14	(HACL1)	0.005083	NR unit decrease	Illumina [1671387] (imputed)	N
707	chr3	15998834	15998835	rs4685282	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p25.1	NR	rs4685282-G		4E-8		0.06	[0.04-0.08] unit increase	NR [NR]	N
707	chr3	16007824	16007825	rs13073161	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p25.1	ANKRD28, GALNT15	rs13073161-?		1E-17				Affymetrix, Illumina [NR] (imputed)	N
707	chr3	16009043	16009044	rs1454776	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3p25.1	GALNT15	rs1454776-T	0.4939	3E-11		6.65	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
707	chr3	16077824	16077825	rs148840717	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	13,137 European ancestry individuals	2,451 European ancestry individuals	3p25.1	NR	rs148840717-T	0.9757	5E-7		1.5813	[0.96-2.2] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
707	chr3	16112434	16112435	rs142101524	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p25.1	NR	rs142101524-T	0.02439	2E-8	(ASAH1)	0.02328	NR unit increase	Illumina [1671387] (imputed)	N
708	chr3	16162532	16162533	rs4234535	31620175	Kornilov SA	2019-09-18	Front Genet	Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi Arabia.	Numerical cognitive ability	354 Saudi Arabian ancestry children	NA	3p25.1	GALNT15	rs4234535-?	NR	9E-6		5.24	[2.97-7.51] unit decrease	Illumina [285340]	N
708	chr3	16192142	16192143	rs6771632	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	3p25.1	NR	rs6771632-?		9E-6	(EA)			Illumina [up to 524000]	N
709	chr3	16363528	16363529	rs61129840	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Thoracic aortic aneurysms	435 European, Indian, Caribbean, African ancestry cases, 8,700 European, Indian, Caribbean, African ancestry ancestry controls	NA	3p24.3		rs61129840-?	NR	8E-7		2.60224		NR [NR] (imputed)	N
710	chr3	16388389	16388390	rs7622858	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral orbital frontal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p24.3	RFTN1	rs7622858-?		4E-6				Illumina [4322238] (imputed)	N
710	chr3	16395667	16395668	rs690037	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup-to-disc ratio)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	3p24.3	RFTN1	rs690037-C	NR	6E-7		0.198	[0.11-0.28] unit increase	Illumina [~ 2740000] (imputed)	N
710	chr3	16395667	16395668	rs690037	20395239	Macgregor S	2010-04-15	Hum Mol Genet	Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.	Optic nerve measurement (cup area)	1,368 European ancestry twins from 666 families	848 European ancestry twins from 531 families	3p24.3	RFTN1	rs690037-C	NR	2E-7		0.208	[0.12-0.29] unit increase	Illumina [~ 2740000] (imputed)	N
710	chr3	16408488	16408489	rs12635698	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	3p24.3	RAFTLIN	rs12635698-C	0.15	5E-6		1.41	[1.21-1.63]	Illumina [457251]	N
710	chr3	16417554	16417555	rs493733	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels (BMI interaction)	up to 15,007 European ancestry male individuals, up to 16,943 European ancestry female individuals	NA	3p24.3	RFTN1	rs493733-G	0.46	6E-6	(Men)	0.013144915	[0.0074-0.0189] unit increase	Affymetrix, Illumina [at least 188473] (imputed)	N
711	chr3	16625047	16625048	rs10510452	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	3p24.3	DAZL	rs10510452-G	0.3	3E-10		1.2195122	[1.15-1.30]	Illumina [9210350] (imputed)	N
711	chr3	16625047	16625048	rs10510452	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	3p24.3	DAZL	rs10510452-A	0.7	1E-9		1.18	[1.13-1.23]	Illumina [at least 371504] (imputed)	N
711	chr3	16625047	16625048	rs10510452	25877299	Kristiansen W	2015-04-15	Hum Mol Genet	Two new loci and gene sets related to sex determination and cancer progression are associated with susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	1,326 European ancestry cases, 6,687 European ancestry controls	710 European ancestry case-parent triads, 289 European ancestry cases, 290 European ancestry controls	3p24.3	DAZL	rs10510452-A	0.729	3E-9		1.32	[NR]	Illumina [610240]	N
711	chr3	16625047	16625048	rs10510452	23666240	Ruark E	2013-05-12	Nat Genet	Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 10,082 European ancestry controls	3p24.3	DAZL	rs10510452-A	0.69	1E-8		1.24	[1.12-1.37]	Illumina [307291]	N
711	chr3	16636464	16636465	rs6787063	31675503	Gurdasani D	2019-10-01	Cell	Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.	Height	14,126 African ancestry individuals	NA	3p24.3		rs6787063-C	0.41	2E-20		0.09	unit decrease	Affymetrix, Illumina [at least 24423923] (imputed)	N
711	chr3	16640074	16640075	rs11710967	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p24.3	NA	rs11710967-T		3E-31		0.0309726	[0.026-0.036] unit decrease	Illumina [13288253] (imputed)	N
712	chr3	16671820	16671821	rs9869622	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	3p24.3	DAZL, PLCL2	rs9869622-C	0.81921203	2E-6		1.0753014	[1.04-1.11]	Illumina [10439017] (imputed)	N
712	chr3	16700333	16700334	rs12494691	30277654	Yokoshima Y	2018-09-14	Neuropsychopharmacol Rep	Gamma-aminobutyric acid transaminase genetic polymorphism is a candidate locus for responsiveness to opioid analgesics in patients with cancer pain: An exploratory study.	Response to opioid analgesics in cancer (pain decrease)	71 Japanese ancestry individuals	NA	3p24.3	intergenic	rs12494691-A	0.2	4E-8		0.01	[NR] unit increase	Illumina [771433]	N
712	chr3	16759283	16759284	rs6779928	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p24.3	NR	rs6779928-?	NR	5E-10		0.01827	[0.013-0.024] unit increase	Affymetrix [10847151] (imputed)	N
712	chr3	16761855	16761856	rs78052952	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	3p24.3		rs78052952-T	0.01494	5E-15		0.606757	[0.45-0.76] unit decrease	Illumina [7506463] (imputed)	N
713	chr3	16778866	16778867	rs1375631	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	3p24.3	NR	rs1375631-G	0.5	7E-9		1.0309278	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
713	chr3	16778866	16778867	rs1375631	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.3	NR	rs1375631-G	0.4975	2E-7	(EA)	0.0321	[0.02-0.044] unit increase	Illumina [~ 11800000] (imputed)	N
713	chr3	16784388	16784389	rs9833158	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine-induced hyponatremia in epilepsy	331 European ancestry cases, 700 European ancestry controls	NA	3p24.3	NR	rs9833158-?		1E-6		1.6393442	[1.35-2.04]	Illumina [NR]	N
713	chr3	16784388	16784389	rs9833158	30868120	Berghuis B	2019-01-17	Epilepsia Open	A genome-wide association study of sodium levels and drug metabolism in an epilepsy cohort treated with carbamazepine and oxcarbazepine.	Carbamazepine- or oxcarbazepine-induced hyponatremia in epilepsy	448 European ancestry cases, 804 European ancestry controls	NA	3p24.3	NR	rs9833158-?		1E-6		1.56	[1.32-1.89]	Illumina [NR]	N
713	chr3	16843736	16843737	rs4684303	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	DAZL	rs4684303-?	NR	1E-6	(symmetric dimethylarginine)	0.23778309	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
713	chr3	16845143	16845144	rs9857592	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	3p24.3	PLCL2	rs9857592-?	NR	1E-8		0.00724277	[0.0048-0.0097] unit decrease	Affymetrix [NR] (imputed)	N
713	chr3	16845143	16845144	rs9857592	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p24.3	NR	rs9857592-A	0.288176654877006	6E-10		0.013563293	[0.0093-0.0179] unit increase	NR [NR]	N
713	chr3	16845143	16845144	rs9857592	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3p24.3	intergenic	rs9857592-A	0.29212	4E-11		6.613	z score increase	Illumina [18485882] (imputed)	N
713	chr3	16845405	16845406	rs9858071	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p24.3	NR	rs9858071-C	NR	3E-10		0.01607	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
713	chr3	16846966	16846967	rs9881798	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p24.3	NR	rs9881798-A	NR	9E-10		6.123	z score decrease	Affymetrix [10847151] (imputed)	N
713	chr3	16846966	16846967	rs9881798	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.3	NR	rs9881798-C	NR	7E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
713	chr3	16850763	16850764	rs55855024	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p24.3		rs55855024-C	0.701	6E-13		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
713	chr3	16850943	16850944	rs7625399	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	3p24.3	NR	rs7625399-C	0.0939	9E-10		0.0160711	[0.011-0.021] unit increase	NR [9732723] (imputed)	N
713	chr3	16851201	16851202	rs748832	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p24.3	DAZL, PLCL2	rs748832-G		1E-8		1.021	[NR]	Affymetrix [up to 79000000] (imputed)	N
713	chr3	16851201	16851202	rs748832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.3	NR	rs748832-G	0.371	2E-15		0.00887082	[0.0067-0.0111] unit increase	NR [9732723] (imputed)	N
713	chr3	16851201	16851202	rs748832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p24.3	NR	rs748832-G	0.371	7E-11		0.017214172	[0.012-0.022] unit increase	NR [~ 10000000] (imputed)	N
713	chr3	16851201	16851202	rs748832	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p24.3	NR	rs748832-G	0.378	4E-8		0.00823471	[0.0053-0.0112] unit decrease	NR [9732723] (imputed)	N
713	chr3	16851201	16851202	rs748832	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.3	NR	rs748832-A	NR	2E-10		0.019265153	[0.013-0.025] unit increase	Affymetrix [NR]	N
713	chr3	16851201	16851202	rs748832	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p24.3	ENSG00000229271, PLCL2	rs748832-?	NR	6E-11		6.551	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
713	chr3	16851201	16851202	rs748832	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	3p24.3	ENSG00000229271	rs748832-?	NR	1E-7		5.288	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
713	chr3	16856681	16856682	rs9813513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.3	Intergenic	rs9813513-T	0.6251	1E-14	(MTAG)	0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
713	chr3	16856681	16856682	rs9813513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p24.3	Intergenic	rs9813513-T	0.6251	2E-8		0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
713	chr3	16856681	16856682	rs9813513	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p24.3	Intergenic	rs9813513-T	0.6311	9E-13	(MTAG)	0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
713	chr3	16858467	16858468	rs73139272	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.3	NR	rs73139272-T	NR	9E-10		6.122	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
713	chr3	16858467	16858468	rs73139272	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.3	NR	rs73139272-?	NR	5E-8		5.439	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
713	chr3	16858521	16858522	rs73139274	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	3p24.3		rs73139274-?	NR	3E-8				NR [7857346] (imputed)	N
713	chr3	16858521	16858522	rs73139274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p24.3		rs73139274-?	NR	3E-8				NR [~ 8900000] (imputed)	N
713	chr3	16858521	16858522	rs73139274	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.3	NR	rs73139274-C	NR	3E-10		0.027791752	[0.019-0.036] unit increase	Affymetrix [NR]	N
713	chr3	16859709	16859710	rs6779302	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3p24.3		rs6779302-G	0.633	1E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
713	chr3	16859709	16859710	rs6779302	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p24.3		rs6779302-?	NR	6E-8				NR [~ 8900000] (imputed)	N
713	chr3	16859709	16859710	rs6779302	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	3p24.3	DAZL, PLCL2	rs6779302-T	0.368	5E-8	(Adults)	5.452	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
713	chr3	16859709	16859710	rs6779302	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	3p24.3	DAZL, PLCL2	rs6779302-T	0.368	5E-8		5.452	z score decrease	Affymetrix, Illumina [12104294] (imputed)	N
713	chr3	16862872	16862873	rs9846711	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p24.3	intergenic	rs9846711-?	NR	4E-12		0.014301584	[0.01-0.018] unit decrease	NR [7306098]	N
713	chr3	16865844	16865845	rs9882532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs9882532-T	0.6368	2E-17		0.0124	[0.0095-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
713	chr3	16865844	16865845	rs9882532	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs9882532-T	0.6368	6E-21	(MTAG)	0.0128	[0.01-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
713	chr3	16866252	16866253	rs9867227	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p24.3	NR	rs9867227-A	NR	5E-10		6.225	z score increase	Affymetrix [10847151] (imputed)	N
713	chr3	16866252	16866253	rs9867227	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p24.3	DAZL	rs9867227-A	0.28261	5E-8		5.47	z score increase	NR [10847151] (imputed)	N
713	chr3	16868615	16868616	rs1866862	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	3p24.3		rs1866862-A	0.37	3E-6				Illumina [6724284] (imputed)	N
713	chr3	16870339	16870340	rs6773869	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	3p24.3	PLCL2	rs6773869-A	0.3519	2E-14		0.018303616	[0.013-0.024] unit decrease	NR [9417325] (imputed)	N
713	chr3	16870339	16870340	rs6773869	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3p24.3	NR	rs6773869-A	NR	3E-9		0.010319	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
713	chr3	16870339	16870340	rs6773869	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p24.3	NR	rs6773869-G	0.353408990639354	2E-9		0.0057391976	[0.0039-0.0076] unit increase	NR [NR]	N
713	chr3	16870339	16870340	rs6773869	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs6773869-A	0.6344	5E-17	(conditional-joint)	0.0122	[0.0093-0.0151] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
713	chr3	16870339	16870340	rs6773869	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3p24.3	PLCL2	rs6773869-A	0.358546	4E-12		6.93	z score decrease	NR [10847151] (imputed)	N
713	chr3	16872540	16872541	rs6442647	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p24.3	NR	rs6442647-A	0.290903082649891	5E-8		0.0070368894	[0.0045-0.0096] unit increase	NR [NR]	N
713	chr3	16872540	16872541	rs6442647	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p24.3	NR	rs6442647-A	0.290903082649891	4E-8		0.005835455	[0.0037-0.0079] unit increase	NR [NR]	N
713	chr3	16872928	16872929	rs2084533	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	3p24.3	NR	rs2084533-T	0.321	7E-10		0.016117558	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
713	chr3	16872928	16872929	rs2084533	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3p24.3	NR	rs2084533-T	0.321	5E-13		0.0168791	[0.012-0.021] unit increase	NR [9732723] (imputed)	N
713	chr3	16875450	16875451	rs6804663	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p24.3	NR	rs6804663-?	NR	3E-8		0.01349	[0.0087-0.0182] unit increase	Affymetrix [10847151] (imputed)	N
713	chr3	16888996	16888997	rs2060597	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.3	PLCL2	rs2060597-T	NR	9E-11		0.005	[0.003-0.007] unit increase	NR [2500000] (imputed)	N
713	chr3	16888996	16888997	rs2060597	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.3	PLCL2	rs2060597-T	NR	1E-6	(Asian)	0.0061	[0.0037-0.0085] unit increase	NR [2500000] (imputed)	N
713	chr3	16897912	16897913	rs6442652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	PLCL2	rs6442652-T	0.404599	4E-12		0.017919688	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
713	chr3	16897912	16897913	rs6442652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.3	PLCL2	rs6442652-T	0.404653	7E-12		0.018085042	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr3	16897912	16897913	rs6442652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs6442652-T	0.404571	6E-11		0.0178238	[0.014-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr3	16897912	16897913	rs6442652	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.3	PLCL2	rs6442652-T	0.404573	9E-12		0.017588444	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr3	16898861	16898862	rs58310839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs58310839-C	0.089028	4E-9		0.024443178	[0.016-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr3	16908185	16908186	rs6766037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p24.3		rs6766037-G	NR	1E-8		0.0154	[0.01-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
713	chr3	16908185	16908186	rs6766037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p24.3		rs6766037-G	NR	3E-18		0.0182	[0.014-0.022] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
713	chr3	16908185	16908186	rs6766037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3p24.3	PLCL2	rs6766037-G	0.218113	7E-49		0.039579988	[0.034-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
713	chr3	16908185	16908186	rs6766037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p24.3	PLCL2	rs6766037-G	0.2181	2E-50		0.04020344	[0.035-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16908341	16908342	rs116249776	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs116249776-G	0.02091	1E-8	(IGHM)	0.1925	NR unit increase	Illumina [1671387] (imputed)	N
714	chr3	16908517	16908518	rs7613595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7613595-C	0.192235	2E-19				Affymetrix, Illumina [19872809] (imputed)	N
714	chr3	16908517	16908518	rs7613595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p24.3	NR	rs7613595-C	0.217648	3E-22		0.023265	[0.019-0.028] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
714	chr3	16908517	16908518	rs7613595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7613595-C	0.19357	2E-45				Affymetrix, Illumina [19905671] (imputed)	N
714	chr3	16908517	16908518	rs7613595	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3p24.3	NR	rs7613595-C	0.217603	2E-48		0.036371	[0.032-0.041] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
714	chr3	16908517	16908518	rs7613595	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p24.3	PLCL2	rs7613595-C	0.2168	3E-10		0.02728228	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16911329	16911330	rs9852648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p24.3	PLCL2	rs9852648-G	0.218439	2E-19		0.024108749	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16911329	16911330	rs9852648	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p24.3	PLCL2	rs9852648-G	0.21842	2E-21		0.025484255	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16911329	16911330	rs9852648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p24.3		rs9852648-?	NR	2E-25				NR [~ 8900000] (imputed)	N
714	chr3	16911950	16911950	rs397943924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	3p24.3		rs397943924-GT	NR	8E-12		0.0195	[0.014-0.025] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
714	chr3	16920804	16920805	rs77533969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs77533969-T	0.0415012	6E-11				Affymetrix, Illumina [24653286] (imputed)	N
714	chr3	16920804	16920805	rs77533969	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs77533969-T	0.0412433	4E-14				Affymetrix, Illumina [24558453] (imputed)	N
714	chr3	16924439	16924440	rs2278609	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3p24.3		rs2278609-T	0.782	1E-11				Affymetrix [10369434] (imputed)	N
714	chr3	16924439	16924440	rs2278609	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	3p24.3	NR	rs2278609-C	0.216	6E-10		0.01191	[0.0081-0.0157] unit increase	NR [8968716] (imputed)	N
714	chr3	16924439	16924440	rs2278609	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3p24.3	PLCL2	rs2278609-T	NR	2E-8		0.0097604	[0.0064-0.0132] unit increase	Affymetrix [18485882] (imputed)	N
714	chr3	16924439	16924440	rs2278609	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p24.3		rs2278609-?	NR	2E-10				NR [~ 8900000] (imputed)	N
714	chr3	16924439	16924440	rs2278609	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p24.3	NR	rs2278609-T	NR	5E-9		5.838	z score decrease	Affymetrix [10847151] (imputed)	N
714	chr3	16924439	16924440	rs2278609	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p24.3	NR	rs2278609-?	NR	9E-9		0.01622	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
714	chr3	16926059	16926060	rs143759545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.3		rs143759545-?	NR	2E-47				NR [~ 8900000] (imputed)	N
714	chr3	16926765	16926766	rs148153072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs148153072-T	0.039683	3E-81				Affymetrix, Illumina [24246363] (imputed)	N
714	chr3	16926765	16926766	rs148153072	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs148153072-T	0.03984	8E-63				Affymetrix, Illumina [20825802] (imputed)	N
714	chr3	16928026	16928027	rs114766804	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p24.3	NR	rs114766804-T	0.968847	4E-15		0.042909	[0.032-0.054] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
714	chr3	16928065	16928066	rs1992381	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p24.3		rs1992381-A	NR	9E-9		0.0177	[0.012-0.024] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
714	chr3	16928065	16928066	rs1992381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.3		rs1992381-?	NR	7E-42				NR [~ 8900000] (imputed)	N
714	chr3	16928091	16928092	rs1992382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs1992382-A	0.0783602	1E-69				Affymetrix, Illumina [24332387] (imputed)	N
714	chr3	16928091	16928092	rs1992382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p24.3	NR	rs1992382-A	0.073067	5E-49		0.052428	[0.045-0.059] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
714	chr3	16928091	16928092	rs1992382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p24.3	NR	rs1992382-A	0.073184	2E-11		0.023889	[0.017-0.031] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
714	chr3	16928136	16928137	rs1992383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs1992383-C	0.080678	4E-19		0.0555196	[0.048-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16928136	16928137	rs1992383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.3	PLCL2	rs1992383-C	0.080673	8E-15		0.034719225	[0.026-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16928136	16928137	rs1992383	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p24.3	NR	rs1992383-C	0.081249	7E-57		0.052911	[0.046-0.059] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
714	chr3	16928620	16928621	rs116480867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p24.3		rs116480867-T	NR	4E-59		0.0786	[0.069-0.088] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
714	chr3	16929108	16929109	rs6788010	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3p24.3		rs6788010-T	0.92	9E-30		0.23	[0.19-0.27] % increase	Affymetrix [NR] (imputed)	N
714	chr3	16929592	16929593	rs6777965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs6777965-T	0.080683	4E-21		0.04079713	[0.032-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16929592	16929593	rs6777965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.3	PLCL2	rs6777965-T	0.080739	4E-13		0.033250675	[0.024-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16931559	16931560	rs79638618	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3p24.3	PLCL2	rs79638618-?	NR	5E-26		0.08428	[0.069-0.1] unit decrease novel	Illumina [6108953] (imputed)	N
714	chr3	16932365	16932366	rs79843017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3p24.3		rs79843017-G	0.076202	2E-21		0.0559937	[0.044-0.068] unit increase	Illumina [13479135] (imputed)	N
714	chr3	16932365	16932366	rs79843017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p24.3		rs79843017-G	NR	9E-63		0.0809	[0.071-0.09] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
714	chr3	16932365	16932366	rs79843017	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3p24.3		rs79843017-G	0.076455	1E-35		0.084253	[0.071-0.097] unit decrease	Illumina [13476266] (imputed)	N
714	chr3	16932365	16932366	rs79843017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3p24.3	NR	rs79843017-A	0.923931	6E-30		0.087551	[0.072-0.103] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
714	chr3	16932709	16932710	rs114893614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p24.3		rs114893614-T	NR	2E-46		0.0594	[0.051-0.067] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
714	chr3	16932709	16932710	rs114893614	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p24.3	PLCL2	rs114893614-T	0.031947	6E-13		0.045589034	[0.033-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16932709	16932710	rs114893614	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs114893614-C	0.966194	5E-13				Affymetrix, Illumina [22063850] (imputed)	N
714	chr3	16932709	16932710	rs114893614	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p24.3		rs114893614-?	NR	9E-16				NR [~ 8900000] (imputed)	N
714	chr3	16932988	16932989	rs73146904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	PLCL2	rs73146904-A	0.073152	4E-12		0.032787975	[0.024-0.042] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16932988	16932989	rs73146904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p24.3	PLCL2	rs73146904-A	0.0737	1E-12		0.04857125	[0.035-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16932988	16932989	rs73146904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p24.3	PLCL2	rs73146904-A	0.0737	5E-19		0.06045652	[0.047-0.074] unit decrease	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16932988	16932989	rs73146904	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p24.3	PLCL2	rs73146904-A	0.0736	4E-17		0.05733242	[0.044-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16940156	16940157	rs115792481	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3p24.3		rs115792481-T	0.077788	5E-34		0.0828903	[0.07-0.096] unit decrease	Illumina [13476299] (imputed)	N
714	chr3	16940156	16940157	rs115792481	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	3p24.3	NR	rs115792481-G	0.925077	5E-25		0.072626	[0.059-0.086] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
714	chr3	16940156	16940157	rs115792481	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3p24.3	PLCL2	rs115792481-?	NR	2E-23		0.07971	[0.064-0.095] unit decrease novel	Illumina [6108953] (imputed)	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	9E-21	(CCL17)	0.53	[0.43-0.63] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	9E-10	(CXCL13)	0.17	[0.11-0.23] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	8E-13	(CCL7)	0.23	[0.17-0.29] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	5E-12	(IFN-gamma)	0.24	[0.18-0.3] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	4E-10	(IL-1beta)	0.22	[0.16-0.28] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	3E-20	(CCL19)	0.48	[0.38-0.58] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	3E-19	(CXCL9)	0.36	[0.28-0.44] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	2E-8	(CX3CL1)	0.16	[0.1-0.22] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	2E-12	(IL-2)	0.27	[0.19-0.35] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	2E-11	(IL-6)	0.26	[0.18-0.34] unit decrease	Affymetrix [622716]	N
714	chr3	16942513	16942514	rs75885714	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.3	PLCL2	rs75885714-C	0.08	2E-11	(IL-10)	0.2	[0.14-0.26] unit decrease	Affymetrix [622716]	N
714	chr3	16950358	16950359	rs115952894	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	3p24.3		rs115952894-G	0.07382	3E-76		0.652145	[0.58-0.72] unit decrease	Illumina [7506463] (imputed)	N
714	chr3	16950358	16950359	rs115952894	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Thymus and reactivation regulated chemokine levels	8,318 European ancestry individuals	NA	3p24.3	PLCL2	rs115952894-A	0.05	1E-104		0.54	[0.49-0.59] unit increase	Illumina [~ 9000000] (imputed)	N
714	chr3	16954644	16954645	rs115910097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3p24.3	NR	rs115910097-C	0.925138	1E-25		0.081869	[0.067-0.097] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
714	chr3	16955258	16955259	rs1372072	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	3p24.3	PLCL2	rs1372072-A	0.38	4E-8		1.2	NR	Illumina [1143634] (imputed)	N
714	chr3	16955258	16955259	rs1372072	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3p24.3	PLCL2	rs1372072-A	0.37	2E-8		1.2	[1.12-1.27]	Illumina [507467]	N
714	chr3	16959651	16959652	rs983545	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p24.3	PLCL2, MIR3714	rs983545-A	0.3482412	2E-12	(EA, C-C motif chemokine 17)	0.3198	[0.23-0.41] unit increase	Affymetrix [509946]	N
714	chr3	16961264	16961265	rs9876137	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	3p24.3		rs9876137-G	NR	8E-11		0.143579	[0.1-0.19] unit increase	NR [5054572] (imputed)	N
714	chr3	16966680	16966681	rs144614991	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	3p24.3	PLCL2	rs144614991-?	NR	4E-14		0.06019	[0.045-0.076] unit increase novel	Illumina [6108953] (imputed)	N
714	chr3	16967220	16967221	rs1156336	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3p24.3		rs1156336-A	NR	7E-12		0.136385	[0.097-0.175] unit decrease	NR [2787054] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	PLCL2	rs9821630-G	0.275009	2E-21		0.025685774	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs9821630-G	0.274986	2E-25		0.026482742	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.3	PLCL2	rs9821630-G	0.275035	5E-37		0.034540188	[0.029-0.04] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs9821630-G	0.274987	3E-39		0.0309973	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.3	PLCL2	rs9821630-G	0.274984	4E-35		0.03289886	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16970937	16970938	rs9821630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p24.3	NR	rs9821630-G	0.27538	5E-44		0.029865	[0.026-0.034] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
714	chr3	16970937	16970938	rs9821630	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.3	PLCL2	rs9821630-A	NR	5E-8		0.002	[0.0012-0.0028] unit decrease	NR [2500000] (imputed)	N
714	chr3	16970937	16970938	rs9821630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p24.3	PLCL2	rs9821630-G	0.2748	1E-15		0.03143501	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16970937	16970938	rs9821630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p24.3	PLCL2	rs9821630-G	0.2748	6E-14		0.02965033	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
714	chr3	16970937	16970938	rs9821630	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	3p24.3	PLCL2	rs9821630-?	NR	8E-6			[0.8628-0.9484]	NR [2492237]	N
714	chr3	16970937	16970938	rs9821630	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.3	PLCL2	rs9821630-G	NR	4E-6		1.08	[1.07-1.1]	Illumina [465434]	N
714	chr3	16972210	16972211	rs2014490	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p24.3	PLCL2	rs2014490-G	0.65	8E-10				NR [> 9500000] (imputed)	N
714	chr3	16972210	16972211	rs2014490	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3p24.3	PLCL2	rs2014490-G	0.65256	9E-10		1.0392638	[1.02653101253782-1.05215464668184]	NR [9572556] (imputed)	N
714	chr3	16973761	16973762	rs17200543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p24.3	PLCL2	rs17200543-A	0.205849	2E-9		0.01632597	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	16981682	16981683	rs4685405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs4685405-T	0.1824	9E-10		0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
714	chr3	16996034	16996035	rs4685408	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	3p24.3	PLCL2	rs4685408-G	NR	2E-7		1.12	NR	Illumina [up to 11532644] (imputed)	N
714	chr3	16996034	16996035	rs4685408	25939698	Tsoi LC	2015-05-05	Nat Commun	Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.	Psoriasis	3,994 European ancestry cases, 7,699 European ancestry controls	6,268 European ancestry cases,  14,172 European ancestry controls, 5,033 cases, 5,707 controls	3p24.3	PLCL2	rs4685408-G	0.48	7E-14		1.12	[NR]	Illumina [696365] (imputed)	N
714	chr3	17011473	17011474	rs3906814	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs3906814-C		5E-10		1.07		NR [8016731] (imputed)	N
714	chr3	17011473	17011474	rs3906814	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs3906814-C	NR	3E-8		1.06	NR	NR [8016731] (imputed)	N
714	chr3	17033983	17033983	rs200726463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p24.3	PLCL2	rs200726463-CAG	0.011292	2E-9		0.07187166	[0.048-0.095] unit increase	Affymetrix [93095623] (imputed)	N
714	chr3	17033983	17033983	rs200726463	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p24.3	PLCL2	rs200726463-CAG	0.0126	2E-11		0.1215533	[0.086-0.157] unit increase	Affymetrix [~ 2500000] (imputed)	N
714	chr3	17036386	17036387	rs73039077	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs73039077-C	0.2471	2E-8		0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
715	chr3	17047031	17047032	rs4452313	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3p24.3	PLCL2	rs4452313-A	NR	8E-10		0.0782946	[0.012-0.145] unit decrease	Illumina [8380626] (imputed)	N
715	chr3	17047031	17047032	rs4452313	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3p24.3	PLCL2	rs4452313-A	0.71	3E-10	(EA)	0.10995	[0.076-0.144] unit decrease	Illumina [8380626] (imputed)	N
715	chr3	17047031	17047032	rs4452313	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.3	PLCL2	rs4452313-T	0.35	2E-10		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
715	chr3	17047031	17047032	rs4452313	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.3	PLCL2	rs4452313-T	0.29	5E-11	(EA)	1.11	[1.08-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
715	chr3	17051327	17051328	rs7653834	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.3	NR	rs7653834-?	NR	1E-9				Affymetrix [NR]	N
715	chr3	17053498	17053499	rs4602367	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	3p24.3		rs4602367-A	NR	2E-10		0.93	[0.91-0.95]	NR [13810676] (imputed)	N
715	chr3	17060202	17060203	rs13083189	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	3p24.3		rs13083189-A	0.2873	4E-8		0.117385	[0.075-0.159] unit increase	Illumina [7506463] (imputed)	N
715	chr3	17064892	17064893	rs6776032	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs6776032-A	0.5146	5E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
715	chr3	17098398	17098399	rs116577908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	PLCL2	rs116577908-G	0.010929	2E-20		0.10983117	[0.087-0.133] unit decrease	Affymetrix [93095623] (imputed)	N
715	chr3	17098398	17098399	rs116577908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs116577908-G	0.010935	3E-25		0.124177925	[0.1-0.15] unit increase	Affymetrix [93095623] (imputed)	N
715	chr3	17098398	17098399	rs116577908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.3	PLCL2	rs116577908-G	0.010925	6E-27		0.12992105	[0.11-0.15] unit increase	Affymetrix [93095623] (imputed)	N
715	chr3	17098398	17098399	rs116577908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.3	PLCL2	rs116577908-G	0.010934	9E-28		0.125877	[0.1-0.15] unit increase	Affymetrix [93095623] (imputed)	N
715	chr3	17098398	17098399	rs116577908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.3	PLCL2	rs116577908-G	0.01093	5E-20		0.108376645	[0.085-0.132] unit increase	Affymetrix [93095623] (imputed)	N
715	chr3	17098398	17098399	rs116577908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p24.3		rs116577908-?	NR	5E-9				NR [~ 8900000] (imputed)	N
715	chr3	17098398	17098399	rs116577908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.3		rs116577908-?	NR	3E-23				NR [~ 8900000] (imputed)	N
715	chr3	17098398	17098399	rs116577908	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.3		rs116577908-?	NR	6E-26				NR [~ 8900000] (imputed)	N
715	chr3	17124383	17124384	rs4618210	24916648	Hirokawa M	2014-06-11	Eur J Hum Genet	A genome-wide association study identifies PLCL2 and AP3D1-DOT1L-SF3A2 as new susceptibility loci for myocardial infarction in Japanese.	Myocardial infarction	1,666 Japanese ancestry cases, 3,198 Japanese ancestry controls	11,412 Japanese ancestry cases, 28,397 Japanese ancestry controls	3p24.3	PLCL2	rs4618210-G	0.44	3E-9		1.1	[1.06-1.14]	Illumina [455781]	N
716	chr3	17180724	17180725	rs4342095	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3p24.3		rs4342095-?	NR	1E-6		0.3098693	[0.19-0.43] unit increase	Illumina [9901720] (imputed)	N
716	chr3	17203328	17203329	rs74796791	29703844	van Zuydam NR	2018-04-27	Diabetes	A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes.	Late diabetic kidney disease in type 2 diabetes	1,339 European ancestry cases, 2,372 European ancestry controls	2,891 European ancestry cases, 6,962 European ancestry controls, 3,755 Asian cases, 10,160 Asian controls, 178 Chinese ancestry cases, 154 Chinese ancestry controls, 39 Indian ancestry cases, 64 Indian ancestry controls	3p24.3	NR	rs74796791-?		5E-6	(EA)	2.04	[1.13-3.70]	Affymetrix, Illumina [up to 9343778] (imputed)	N
716	chr3	17244667	17244668	rs2470581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.3		rs2470581-?	NR	1E-10				NR [~ 8900000] (imputed)	N
717	chr3	17315757	17315758	rs2084572	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p24.3	TBC1D5	rs2084572-A	0.549248	4E-11		0.0139825	[0.0099-0.018] unit decrease	NR [16516521] (imputed)	N
717	chr3	17330091	17330092	rs2470578	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.3	NR	rs2470578-G	NR	3E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
717	chr3	17330648	17330649	rs283914	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	3p24.3	TBC1D5	rs283914-T	0.53	5E-9		1.024	[1.016-1.032]	Affymetrix [7736308] (imputed)	N
717	chr3	17330648	17330649	rs283914	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3p24.3	NR	rs283914-T	0.54	4E-8		0.029	[0.019-0.039] unit increase	Affymetrix [NR] (imputed)	N
717	chr3	17330648	17330649	rs283914	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3p24.3	NR	rs283914-T	0.54	4E-25		0.056	[0.046-0.066] unit decrease	Affymetrix [NR] (imputed)	N
717	chr3	17344114	17344115	rs41384544	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.3	NR	rs41384544-?	NR	3E-39				Affymetrix [NR]	N
717	chr3	17394614	17394615	rs1374197	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p24.3	TBC1D5	rs1374197-A	0.525	5E-8		0.0065	[0.0041-0.0089] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
717	chr3	17403544	17403545	rs75330476	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p24.3		rs75330476-A	NR	1E-6		4.8937173	z score increase	Affymetrix, Illumina [NR] (imputed)	N
717	chr3	17407929	17407930	rs9870741	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	3p24.3		rs9870741-G	0.29	7E-7				NR [13131314] (imputed)	N
717	chr3	17407929	17407930	rs9870741	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p24.3		rs9870741-G	0.29	3E-31		11.63	z score increase	Affymetrix [9061022] (imputed)	N
717	chr3	17407929	17407930	rs9870741	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p24.3	NR	rs9870741-G	0.3143	1E-17				NR [9056863] (imputed)	N
717	chr3	17407929	17407930	rs9870741	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3p24.3	DAB1	rs9870741-?		6E-10				NR [7428630] (imputed)	N
717	chr3	17407929	17407930	rs9870741	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p24.3	TBC1D5	rs9870741-?		8E-13				NR [7428630] (imputed)	N
717	chr3	17414231	17414232	rs144768790	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs144768790-G	0.02265	1E-8	(GPNMB)	0.03866	NR unit increase	Illumina [1671387] (imputed)	N
717	chr3	17414886	17414887	rs17273013	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	3p24.3	NR	rs17273013-?	NR	7E-7		0.2032	[0.12-0.28] unit increase	Illumina [at least 560000] (imputed)	N
718	chr3	17439509	17439510	rs11720653	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p24.3		rs11720653-C	0.29	1E-53		15.41	z score increase	Affymetrix [9061022] (imputed)	N
718	chr3	17439509	17439510	rs11720653	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p24.3		rs11720653-C	0.29	3E-18		8.72	z score increase	Affymetrix [9061022] (imputed)	N
718	chr3	17439509	17439510	rs11720653	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p24.3	NR	rs11720653-C	0.3146	1E-17				NR [9056863] (imputed)	N
718	chr3	17439509	17439510	rs11720653	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p24.3		rs11720653-?	NR	6E-29				NR [9705931] (imputed)	N
718	chr3	17509262	17509263	rs56249239	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p24.3		rs56249239-C	NR	6E-8		5.416825	z score increase	Affymetrix, Illumina [NR] (imputed)	N
718	chr3	17525504	17525505	rs9812906	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p24.3		rs9812906-G	0.559	3E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
718	chr3	17554859	17554860	rs67851870	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	3p24.3	TBC1D5	rs67851870-A	0.322	7E-16		8.07819	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
719	chr3	17623861	17623862	rs73028303	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	3p24.3	NR	rs73028303-?	NR	4E-7		0.2121	[0.13-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
719	chr3	17650372	17650373	rs557114227	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p24.3	TBC1D5	rs557114227-A	0.0016	2E-6		0.7111	[0.42-1.01] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
719	chr3	17655994	17655995	rs114500003	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p24.3		rs114500003-C	NR	1E-7		5.2764845	z score increase	Affymetrix, Illumina [NR] (imputed)	N
719	chr3	17694540	17694541	rs73028353	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs73028353-T	0.02439	1E-8	(LGALS1)	0.2262	NR unit increase	Illumina [1671387] (imputed)	N
720	chr3	17791026	17791027	rs11708664	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	3p24.3	NR	rs11708664-A	0.711729	1E-6		1.1520737	[1.09-1.21]	Affymetrix [7791636] (imputed)	N
720	chr3	17793503	17793504	rs75754569	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Peptococcus id.2037)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p24.3		rs75754569-C	NR	1E-8		5.7147217	z score increase	Affymetrix, Illumina [NR] (imputed)	N
720	chr3	17796191	17796192	rs4908972	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3p24.3	NR	rs4908972-?	NR	8E-9				Illumina [up to 5582932] (imputed)	N
721	chr3	17832828	17832829	rs6577596	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p24.3	TBC1D5, SATB1	rs6577596-C	0.4	1E-8		5.69	z-score increase	Affymetrix [4314223] (imputed)	N
721	chr3	17840227	17840228	rs138785378	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	3p24.3	NR	rs138785378-?	NR	9E-8		0.2038	[0.13-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
721	chr3	17854597	17854598	rs114147886	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	3p24.3	TBC1D5	rs114147886-?		8E-8	(BB-153)	0.82	[0.53-1.11] unit increase	Affymetrix [629686]	N
721	chr3	17859365	17859366	rs4330281	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p24.3	PP1P	rs4330281-C	NR	3E-8		1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
721	chr3	17859365	17859366	rs4330281	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p24.3	PP1P	rs4330281-C	NR	1E-7	(EA)	1.0594343	[1.04-1.08]	Illumina [6627481] (imputed)	N
721	chr3	17859365	17859366	rs4330281	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p24.3	TBC1D5	rs4330281-C	NR	3E-8		1.0615711	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
721	chr3	17859365	17859366	rs4330281	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.3	NR	rs4330281-C	NR	3E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
721	chr3	17859365	17859366	rs4330281	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3p24.3	TBC1D5	rs4330281-C	0.52	5E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
721	chr3	17886677	17886678	rs7632834	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	40,675 schizophrenia cases, 4,819 Tourette's syndrome cases	NA	3p24.3		rs7632834-?	NR	2E-8		0.0206	NR unit increase	NR [4502103] (imputed)	N
721	chr3	17887635	17887635	rs11409090	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3p24.3	TBC1D5	rs11409090-?	NR	2E-9		1.0615711	[1.04-1.08]	Illumina [8000000] (imputed)	N
722	chr3	18007267	18007268	rs7640342	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.3	NR	rs7640342-T	0.468	4E-12		0.00761115	[0.0055-0.0098] unit decrease	NR [9732723] (imputed)	N
722	chr3	18007267	18007268	rs7640342	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p24.3	NR	rs7640342-T	0.465	6E-11		0.00968691	[0.0068-0.0126] unit increase	NR [9732723] (imputed)	N
722	chr3	18014303	18014304	rs13061596	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs13061596-A	0.0442	2E-8	(MTAG)	0.0179	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
723	chr3	18108123	18108124	rs13095954	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	3p24.3	NR	rs13095954-?	NR	1E-7		0.09319695	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
723	chr3	18127660	18127661	rs12637607	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p24.3		rs12637607-?	NR	5E-8				NR [~ 8900000] (imputed)	N
723	chr3	18145063	18145064	rs7624278	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	3p24.3		rs7624278-G	0.01	2E-7		2.5	unit increase	Affymetrix [NR] (imputed)	N
723	chr3	18154518	18154519	rs9853258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p24.3		rs9853258-?	NR	8E-11				NR [~ 8900000] (imputed)	N
723	chr3	18167161	18167162	rs1398651	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	3p24.3	SATB1	rs1398651-A	0.5633	4E-8		1.0194204	[NR]	Illumina [12493444] (imputed)	N
723	chr3	18167161	18167162	rs1398651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p24.3	Intergenic	rs1398651-A	0.5696	5E-9	(MTAG)	0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
723	chr3	18186604	18186605	rs76412624	32492107	Huang XF	2020-06-01	Invest Ophthalmol Vis Sci	Genomewide Association Study of Acute Anterior Uveitis Identifies New Susceptibility Loci.	Acute anterior uveitis in ankylosing spondylitis	2,752 European ancestry cases, 3,836 European ancestry controls	NA	3p24.3	intergenic	rs76412624-?	NR	2E-6		1.4925373	[1.27-1.75]	Illumina [7436415] (imputed)	N
724	chr3	18223441	18223442	rs13078687	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3p24.3	TBC1D5	rs13078687-A		9E-9		0.1206	[0.079-0.162] unit increase	Illumina [NR]	N
724	chr3	18246869	18246870	rs9817910	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p24.3	LOC339862	rs9817910-G	0.4424	2E-10		1.021835		Affymetrix [11880941] (imputed)	N
724	chr3	18250508	18250509	rs7618405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p24.3		rs7618405-A	NR	7E-51		0.0412	[0.036-0.046] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
724	chr3	18250508	18250509	rs7618405	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p24.3		rs7618405-C	0.79	2E-24				Affymetrix [10369434] (imputed)	N
724	chr3	18250508	18250509	rs7618405	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p24.3		rs7618405-C	0.79	9E-29				Affymetrix [10369434] (imputed)	N
724	chr3	18250508	18250509	rs7618405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p24.3	TBC1D5	rs7618405-A	0.209308	2E-31		0.032291193	[0.027-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr3	18250508	18250509	rs7618405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p24.3	TBC1D5	rs7618405-A	0.209915	3E-16		0.02224339	[0.017-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr3	18250508	18250509	rs7618405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p24.3	TBC1D5	rs7618405-A	0.20992	3E-12		0.01895763	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr3	18250508	18250509	rs7618405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7618405-C	0.792795	5E-48				Affymetrix, Illumina [17210439] (imputed)	N
724	chr3	18250508	18250509	rs7618405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p24.3	NR	rs7618405-C	0.7891	2E-49		0.034753	[0.03-0.039] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
724	chr3	18250508	18250509	rs7618405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p24.3		rs7618405-?	NR	2E-8				NR [~ 8900000] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in IDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	3E-8		0.156298	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in IDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	1E-8		0.160438	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large LDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	4E-8		0.156634	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in IDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	2E-8		0.158574	[0.1-0.21] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	4E-8		0.154215	[0.099-0.209] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium VLDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	2E-8		0.163122	[0.11-0.22] unit decrease	NR [11722792] (imputed)	N
724	chr3	18264055	18264056	rs187814248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in IDL	115,082 European ancestry individuals	NA	3p24.3		rs187814248-T	0.994129	4E-8		0.154255	[0.099-0.209] unit decrease	NR [11722792] (imputed)	N
724	chr3	18277487	18277488	rs4073221	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	3p24.3	SATB1	rs4073221-G	0.132	2E-8		1.1	[1.06-1.13]	Illumina [11933700] (imputed)	N
724	chr3	18280997	18280998	rs4129798	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	3p24.3	NR	rs4129798-?	NR	2E-6	(AA)	1.8181818	[NR]	Affymetrix, Illumina [NR] (imputed)	N
724	chr3	18282573	18282574	rs62238493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p24.3	NR	rs62238493-A	0.246273	7E-12		0.015813	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
724	chr3	18290532	18290533	rs9828823	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs9828823-T	0.4793	1E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
724	chr3	18311411	18311412	rs7641175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p24.3	TBC1D5	rs7641175-A	0.782761	7E-55		0.04232218	[0.037-0.048] unit increase	Affymetrix [93095623] (imputed)	N
724	chr3	18311411	18311412	rs7641175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p24.3	TBC1D5	rs7641175-A	0.78273	1E-30		0.03095804	[0.026-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
724	chr3	18311411	18311412	rs7641175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7641175-A	0.819224	2E-76				Affymetrix, Illumina [24588908] (imputed)	N
724	chr3	18311411	18311412	rs7641175	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p24.3	NR	rs7641175-A	0.779156	4E-78		0.041302	[0.037-0.046] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
724	chr3	18311411	18311412	rs7641175	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3p24.3	TBC1D5	rs7641175-A	0.7811	5E-10		0.02708684	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
724	chr3	18311411	18311412	rs7641175	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p24.3	TBC1D5	rs7641175-A	0.7809	2E-25		0.04580118	[0.037-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
724	chr3	18311411	18311412	rs7641175	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p24.3	TBC1D5	rs7641175-A	0.7811	4E-18		0.03792251	[0.029-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
724	chr3	18311411	18311412	rs7641175	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	3p24.3	SATB1	rs7641175-A	NR	3E-11		2.757	[1.94-3.57] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
724	chr3	18318128	18318129	rs7427439	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3p24.3	TBC1D5	rs7427439-G	0.7431	5E-13		0.03032733	[0.022-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
725	chr3	18352585	18352586	rs34553248	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine withdrawal	540 Finnish ancestry cases and 1,163 Finnish ancestry controls from up to 739 families	NA	3p24.3	NR	rs34553248-A	0.13572	4E-6		0.1086218	[0.063-0.154] unit increase	Illumina [9469131] (imputed)	N
725	chr3	18361758	18361759	rs73038319	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3p24.3	SATB1	rs73038319-A	0.9592	6E-13		0.1693	[0.12-0.22] unit decrease	NR [7784415] (imputed)	N
725	chr3	18397848	18397849	rs6577641	24714607	Dijkstra AE	2014-04-08	PLoS One	Susceptibility to chronic mucus hypersecretion, a genome wide association study.	Chronic mucus hypersecretion	717 European ancestry cases, 2,385 European ancestry controls	1,963 European ancestry cases, 5,801 European ancestry controls, 24 Erasmus Rucphen cases, 28 Erasmus Rucphen controls	3p24.3	SATB1	rs6577641-G	0.40	4E-6		1.17	[NR]	Illumina [492700]	N
725	chr3	18411407	18411408	rs78864163	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	3p24.3	NR	rs78864163-?	NR	6E-6				Illumina [1735619]	N
725	chr3	18427476	18427477	rs9756797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p24.3		rs9756797-?	NR	4E-10				NR [~ 8900000] (imputed)	N
725	chr3	18429361	18429362	rs186065237	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p24.3	SATB1	rs186065237-G	0.006	6E-6		5.52	[2.64-11.54]	Illumina [8672852] (imputed)	N
725	chr3	18463733	18463734	rs141634179	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.3	NR	rs141634179-C	0.0235	6E-6	(EA)	0.1019	[0.058-0.146] unit decrease	Illumina [~ 11800000] (imputed)	N
725	chr3	18465749	18465750	rs115865014	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	3p24.3	NR	rs115865014-?	NR	8E-7		0.604	[0.36-0.84] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
726	chr3	18502615	18502616	rs6550775	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3p24.3	NR	rs6550775-G	0.366	5E-9		0.0140855	[0.0094-0.0188] unit increase	NR [9732723] (imputed)	N
726	chr3	18581847	18581848	rs7633075	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	3p24.3	NR	rs7633075-T	0.134	6E-6		0.133	[0.076-0.19] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
726	chr3	18596610	18596611	rs62241022	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3p24.3		rs62241022-T	NR	7E-9		0.319	[0.21-0.43] unit decrease	Affymetrix [509886] (imputed)	N
727	chr3	18621036	18621037	rs9883788	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p24.3	NR	rs9883788-A	0.367368140175105	4E-8		0.0052319723	[0.0034-0.0071] unit increase	NR [NR]	N
727	chr3	18621037	18621038	rs9828082	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	3p24.3	NR	rs9828082-A	0.324	6E-6		0.0165609	[0.0094-0.0237] unit increase	Affymetrix [up to 6544775] (imputed)	N
727	chr3	18623289	18623290	rs2102649	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p24.3	NR	rs2102649-G	0.373191496946233	3E-8		0.0084360875	[0.0055-0.0114] unit increase	NR [NR]	N
727	chr3	18623289	18623290	rs2102649	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p24.3	NR	rs2102649-G	0.373191496946233	3E-8		0.005380599	[0.0035-0.0073] unit increase	NR [NR]	N
727	chr3	18641844	18641845	rs6787782	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	3p24.3	NR	rs6787782-T	0.141	2E-8		0.0149	[0.0098-0.02] unit decrease	Illumina [NR] (imputed)	N
727	chr3	18645514	18645515	rs6769912	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being	388,538 European ancestry individuals	NA	3p24.3	NR	rs6769912-C	0.141	3E-8		0.018	[0.012-0.024] unit decrease	Illumina [NR] (imputed)	N
727	chr3	18662987	18662988	rs11915281	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	1,541 European ancestry cases, 2,634 European ancestry controls	NA	3p24.3	SATB1	rs11915281-T	0.02	5E-6		2.09	[1.52-2.87]	Illumina [102585]	N
727	chr3	18672043	18672044	rs77744158	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs77744158-T	0.01916	6E-9	(AMBP)	0.02873	NR unit increase	Illumina [1671387] (imputed)	N
727	chr3	18673504	18673505	rs13097863	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p24.3		rs13097863-A	NR	3E-8		0.0136	[0.0089-0.0183] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
727	chr3	18674097	18674098	rs4395418	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	3p24.3		rs4395418-A	0.2488	4E-10		0.92		Affymetrix, Illumina [9397031] (imputed)	N
727	chr3	18674643	18674644	rs4619804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p24.3		rs4619804-?	NR	1E-8				NR [~ 8900000] (imputed)	N
727	chr3	18684618	18684619	rs10865753	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs10865753-A	0.473018	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
727	chr3	18698927	18698928	rs9845443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p24.3		rs9845443-?	NR	8E-8				NR [~ 8900000] (imputed)	N
727	chr3	18702035	18702036	rs13090941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p24.3	AC144521.1	rs13090941-A	0.502232	4E-11		0.014539403	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
727	chr3	18702035	18702036	rs13090941	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p24.3	SATB1	rs13090941-A	0.4953	3E-21		0.018347727	[0.015-0.022] unit decrease	Illumina [9339358] (imputed)	N
727	chr3	18702035	18702036	rs13090941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p24.3		rs13090941-?	NR	2E-9				NR [~ 8900000] (imputed)	N
727	chr3	18706336	18706337	rs11128901	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p24.3	NR	rs11128901-G	0.378335	3E-8		0.011155	[0.0072-0.0151] unit decrease	NR [NR]	N
727	chr3	18706505	18706506	rs68080462	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	3p24.3	AC144521.1	rs68080462-?	NR	3E-8	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
727	chr3	18706857	18706858	rs13073817	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	3p24.3	intergenic	rs13073817-A	0.322	7E-9		1.08	[1.03-1.13]	Affymetrix, Illumina [953241] (imputed)	N
727	chr3	18718054	18718055	rs7615602	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p24.3	NR	rs7615602-G	0.7285	3E-9		1.0405828	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
727	chr3	18721735	18721736	rs76942353	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3p24.3	NR	rs76942353-?		6E-7	(PCB153)	1.02	[0.63-1.41] unit decrease	Illumina [8736858] (imputed)	N
727	chr3	18721735	18721736	rs76942353	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3p24.3	NR	rs76942353-?		5E-8	(PCB74)	1.18	[0.75-1.61] unit decrease	Illumina [8736858] (imputed)	N
727	chr3	18721735	18721736	rs76942353	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3p24.3	NR	rs76942353-?		2E-7	(PCB138)	1.11	[0.7-1.52] unit decrease	Illumina [8736858] (imputed)	N
727	chr3	18729359	18729360	rs4473575	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p24.3	SATB1	rs4473575-T	0.9281	6E-9		0.021895241	[0.015-0.029] unit decrease	Illumina [9339358] (imputed)	N
727	chr3	18730251	18730252	rs13078720	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p24.3	AC144521.1	rs13078720-T	0.16432	1E-10		0.019716129	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
727	chr3	18730551	18730552	rs4597738	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p24.3	NA	rs4597738-T		2E-8		0.0110819	[0.0072-0.015] unit increase	Illumina [13288253] (imputed)	N
727	chr3	18735205	18735206	rs4603973	31906708	Levey DF	2020-01-07	Am J Psychiatry	Reproducible Genetic Risk Loci for Anxiety: Results From ~200,000 Participants in the Million Veteran Program.	Anxiety	175,163 European ancestry individuals, 24,448 African American individuals	NA	3p24.3	SATB1-AS1	rs4603973-G	NR	6E-11	(EA)			Affymetrix [at least 723305] (imputed)	N
727	chr3	18738939	18738940	rs6550597	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p24.3	NR	rs6550597-A	NR	8E-10		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
727	chr3	18738939	18738940	rs6550597	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p24.3	NA	rs6550597-A	0.7193	3E-9		0.0117	[0.0078-0.0156] unit increase	NR [~ 27400000] (imputed)	N
727	chr3	18738939	18738940	rs6550597	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	3p24.3	NR	rs6550597-A	0.7193	3E-9		0.0117	[0.0078-0.0156] unit increase	NR [~ 27400000] (imputed)	N
727	chr3	18741801	18741802	rs11708026	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p24.3	NR	rs11708026-?	NR	8E-11	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
728	chr3	18745499	18745500	rs13095117	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p24.3	SATB1	rs13095117-A	0.392	3E-22		0.0117	[0.0093-0.0141] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
728	chr3	18751610	18751611	rs35963943	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs35963943-A	0.176278	7E-44				Affymetrix, Illumina [23472807] (imputed)	N
728	chr3	18751610	18751611	rs35963943	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p24.3	AC144521.1	rs35963943-A	0.178	2E-13		0.03451656	[0.025-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
728	chr3	18752030	18752031	rs55845060	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3p24.3	Intergenic	rs55845060-T	NR	2E-6		0.031681	[0.019-0.045] unit decrease	Illumina [13520550] (imputed)	N
728	chr3	18752910	18752911	rs28694217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p24.3		rs28694217-?	NR	4E-13				NR [~ 8900000] (imputed)	N
728	chr3	18756229	18756230	rs13086597	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p24.3		rs13086597-A	NR	8E-25		0.0283	[0.023-0.034] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
728	chr3	18758500	18758501	rs6775319	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Physical activity (overall physical activity time)	91,105 European ancestry individuals	NA	3p24.3	SATB1-AS1	rs6775319-A	0.271	4E-8		0.027428398	[0.018-0.037] SD units increase	NR [9926106] (imputed)	N
728	chr3	18760057	18760058	rs113261052	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p24.3		rs113261052-A	0.828	4E-16				Affymetrix [10369434] (imputed)	N
728	chr3	18760093	18760094	rs11707962	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p24.3	NR	rs11707962-C	0.176285	3E-43		0.034123	[0.029-0.039] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
728	chr3	18761623	18761623	rs35961074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p24.3	AC144521.1	rs35961074-CT	0.173795	2E-13		0.021616695	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
728	chr3	18761623	18761623	rs35961074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p24.3	AC144521.1	rs35961074-CT	0.173848	2E-13		0.021698039	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
728	chr3	18761623	18761623	rs35961074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.3	AC144521.1	rs35961074-CT	0.173852	4E-35		0.036304522	[0.031-0.042] unit increase	Affymetrix [93095623] (imputed)	N
728	chr3	18761623	18761623	rs35961074	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p24.3	NR	rs35961074-I	0.17419	1E-14		0.02098	[0.016-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
728	chr3	18762788	18762789	rs36022132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p24.3	AC144521.1	rs36022132-G	0.177355	2E-9		0.017347557	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
728	chr3	18764274	18764275	rs4487258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs4487258-G	0.174075	2E-13				Affymetrix, Illumina [24649327] (imputed)	N
728	chr3	18764303	18764304	rs4261897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p24.3		rs4261897-?	NR	2E-14				NR [~ 8900000] (imputed)	N
728	chr3	18767403	18767404	rs4256159	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p24.3	NR	rs4256159-A	0.1459	7E-14	(EA)	1.1343944	[1.1-1.17]	Affymetrix, Illumina [~ 9000000] (imputed)	N
728	chr3	18767403	18767404	rs4256159	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	3p24.3	intergenic	rs4256159-T	0.14	9E-15		1.107	[1.063-1.152]	Affymetrix, Illumina [1230000] (imputed)	N
728	chr3	18773708	18773709	rs556720198	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p24.3	SATB1-AS1	rs556720198-A	0.0015	3E-6		1.2507	[0.72-1.78] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
728	chr3	18776061	18776062	rs62240924	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p24.3		rs62240924-A	NR	1E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
728	chr3	18784422	18784423	rs6809854	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3p24.3	SATB1, KCNH8	rs6809854-G	0.197	1E-9		0.0280832	[0.019-0.037] unit decrease	Illumina [13520550] (imputed)	N
728	chr3	18784422	18784423	rs6809854	20953190	Strange A	2010-10-17	Nat Genet	A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.	Psoriasis	2,178 European ancestry cases, 5,175 European ancestry controls	3,174 European ancestry cases, 5,464 European ancestry controls	3p24.3	intergenic	rs6809854-G	0.19	1E-7		1.14	[1.04-1.26]	Illumina [535475]	N
728	chr3	18785584	18785585	rs11719975	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3p24.3	intergenic	rs11719975-C	0.28	1E-8		1.08		Illumina [161311]	N
728	chr3	18790269	18790270	rs9837347	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p24.3	Intergenic	rs9837347-G	NR	6E-6		0.0167513	[0.0095-0.024] unit decrease	Illumina [13520550] (imputed)	N
728	chr3	18798847	18798848	rs9863496	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p24.3	SATB1-AS1	rs9863496-C	NR	3E-14		1.0755001	NR	Affymetrix, Illumina [8278136] (imputed)	N
728	chr3	18804654	18804655	rs9847248	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3p24.3		rs9847248-?	NR	4E-8		0.0123077	[0.0079-0.0167] unit increase	NR [6912294] (imputed)	N
728	chr3	18805210	18805211	rs73178598	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3p24.3	AC144521.1	rs73178598-?	NR	3E-13	(subset analysis)			Illumina [130052]	N
728	chr3	18812735	18812736	rs6550653	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p24.3	AC144521.1	rs6550653-G	0.451442	4E-10		0.013862796	[0.0095-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
728	chr3	18824297	18824298	rs7428918	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p24.3	NA	rs7428918-G	0.7143	9E-9	(Female)	1.048218	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
728	chr3	18852696	18852697	rs9831002	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	3p24.3	KCNH8	rs9831002-T	0.49	9E-10		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
728	chr3	18852696	18852697	rs9831002	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	3p24.3	KCNH8	rs9831002-T	0.49	2E-9		0.033	[0.022-0.044] unit decrease	Affymetrix [at least 8900000] (imputed)	N
729	chr3	18883862	18883863	rs73043051	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (50 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	3p24.3	KCNH8	rs73043051-T	0.777384	8E-9		0.040635	[0.027-0.054] unit decrease	Affymetrix [509255] (imputed)	N
729	chr3	18887984	18887985	rs7617937	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.3	NR	rs7617937-A	NR	7E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
729	chr3	18930124	18930125	rs4401379	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	3p24.3	AC144521.1	rs4401379-T	0.128	4E-6				Illumina [331281]	N
729	chr3	18984746	18984747	rs148512905	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	3p24.3		rs148512905-C	0.010386	1E-7		2.6845636	NR	Affymetrix [7846216] (imputed)	N
730	chr3	19059864	19059865	rs1349287	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3p24.3	KCNH8	rs1349287-A	NR	1E-6		0.20793237	[0.12-0.29] unit increase	Affymetrix [9576485] (imputed)	N
730	chr3	19097389	19097390	rs115990514	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3p24.3	intergenic	rs115990514-?	NR	5E-7	(AA)	0.065	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
730	chr3	19115330	19115331	rs6550942	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p24.3	KCNH8	rs6550942-C	0.7846	3E-8		0.0137425	[0.0088-0.0187] unit decrease	NR [16516521] (imputed)	N
732	chr3	19329051	19329052	rs149729355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	3p24.3		rs149729355-T	3.8579E-4	2E-8		1.8435012	[1.2-2.49] unit increase	Illumina [13427711] (imputed)	N
732	chr3	19329051	19329052	rs149729355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Stable angina pectoris	17,894 European ancestry cases, 325,132 European ancestry controls, 18,833 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	3p24.3		rs149729355-T	NR	2E-8		1.8435	[1.2-2.49] unit increase	Affymetrix, Illumina [20456336] (imputed)	N
732	chr3	19334694	19334695	rs727139	28374850	Ellinghaus E	2017-04-04	Sci Rep	Genome-wide association analysis for chronic venous disease identifies EFEMP1 and KCNH8 as susceptibility loci.	Chronic venous disease	323 German ancestry cases and 4,619 German ancestry controls	1,946 German ancestry cases and 3,146 German ancestry controls	3p24.3	KCNH8	rs727139-A	0.79	5E-11		1.37	[1.25-1.52]	Affymetrix [1934349] (imputed)	N
732	chr3	19363515	19363516	rs116215823	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	3p24.3	NR	rs116215823-T	0.0105559	7E-6		1.068	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
732	chr3	19375790	19375791	rs2053506	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p24.3	KCNH8	rs2053506-?	NR	4E-6	(NeckZ1)			Affymetrix [70897]	N
732	chr3	19377310	19377311	rs77154532	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3p24.3	KCNH8	rs77154532-A		5E-12		0.0062	[0.0044-0.008] unit increase	Affymetrix [13304133] (imputed)	N
734	chr3	19539243	19539244	rs74616384	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs74616384-G	0.09408	9E-9	(LAP3)	0.4075	NR unit increase	Illumina [1671387] (imputed)	N
734	chr3	19542224	19542225	rs150121445	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3p24.3		rs150121445-A	0.238778	2E-8		0.0208652	[0.014-0.028] unit decrease	Illumina [13479178] (imputed)	N
734	chr3	19659616	19659617	rs77377847	34020725	Reddy JS	2021-05-21	Acta Neuropathol Commun	Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease.	Cerebral amyloid angiopathy x sex interaction in Alzheimer's disease	370 European ancestry men, 451 European ancestry women	NA		KCNH8	rs77377847-A	0.03	1E-6				Illumina [1679420] (imputed)	N
735	chr3	19786376	19786377	rs112716940	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs112716940-T	0.01742	3E-10	(AADAC)	0.03379	NR unit increase	Illumina [1671387] (imputed)	N
735	chr3	19786376	19786377	rs112716940	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs112716940-T	0.01742	2E-8	(CYP4A11)	0.2322	NR unit increase	Illumina [1671387] (imputed)	N
737	chr3	19998855	19998856	rs146206942	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.3		rs146206942-?	NR	2E-16		0.076553	[0.058-0.095] unit increase	Affymetrix [20259828] (imputed)	N
737	chr3	19999528	19999529	rs147723444	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		3p24.3	RAB5A	rs147723444-G	0.0103365	5E-6		1.95522	[1.13-2.78] unit decrease	Illumina [640625] (imputed)	N
737	chr3	20023858	20023859	rs115814778	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.3	RAB5A	rs115814778-G	0.98768	9E-11		0.0541169	[0.038-0.07] unit increase	NR [13737936] (imputed)	N
738	chr3	20059748	20059749	rs2948098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p24.3		rs2948098-A	NR	2E-8		0.0124	[0.0081-0.0167] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
738	chr3	20073192	20073193	rs189267552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p24.3		rs189267552-A	NR	4E-9		0.0512	[0.034-0.068] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
738	chr3	20073192	20073193	rs189267552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p24.3		rs189267552-?	NR	7E-10				NR [~ 8900000] (imputed)	N
738	chr3	20073192	20073193	rs189267552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.3		rs189267552-?	NR	9E-13				NR [~ 8900000] (imputed)	N
738	chr3	20073192	20073193	rs189267552	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p24.3	KAT2B	rs189267552-A	0.0128	1E-11		0.783	[0.56-1.01] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
738	chr3	20083880	20083881	rs1915919	24677629	Wolf EJ	2014-03-27	Depress Anxiety	A genome-wide association study of clinical symptoms of dissociation in a trauma-exposed sample.	Post-traumatic stress disorder	484 European ancestry trauma-exposed individuals	NA	3p24.3	KAT2B	rs1915919-?		8E-6		0.74	[0.43-1.05] unit increase	Illumina [1197702]	N
738	chr3	20095377	20095378	rs7620608	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p24.3	KAT2B	rs7620608-T	0.61	1E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
738	chr3	20101562	20101563	rs9874923	24376456	Simino J	2013-12-12	Front Genet	Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.	Mean arterial pressure (alcohol consumption interaction)	up to 6,882 individuals	NA	3p24.3	KAT2B	rs9874923-T	0.43	4E-7	(drinks/week)	0.104	[0.063-0.145] unit increase	Affymetrix [2500000] (imputed)	N
738	chr3	20103324	20103326	rs373244060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p24.3	NR	rs373244060-I	0.672906	2E-15		0.017431	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
738	chr3	20105425	20105426	rs2948097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3p24.3		rs2948097-G	0.455596	2E-14		0.0276726	[0.021-0.035] unit decrease	Illumina [13476266] (imputed)	N
738	chr3	20105425	20105426	rs2948097	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3p24.3		rs2948097-G	0.455822	3E-9		0.0216608	[0.015-0.029] unit decrease	Illumina [13476299] (imputed)	N
738	chr3	20105425	20105426	rs2948097	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3p24.3	NR	rs2948097-A	0.534948	4E-16		0.033267	[0.025-0.041] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
738	chr3	20105425	20105426	rs2948097	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3p24.3	KAT2B	rs2948097-?	NR	1E-10		0.02759	[0.019-0.036] unit decrease novel	Illumina [6108953] (imputed)	N
738	chr3	20105672	20105673	rs12636078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p24.3		rs12636078-G	NR	5E-13		0.0131	[0.0096-0.0166] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
738	chr3	20105672	20105673	rs12636078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p24.3		rs12636078-G	NR	8E-43		0.0288	[0.025-0.033] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
738	chr3	20105672	20105673	rs12636078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p24.3		rs12636078-G	NR	6E-34		0.0255	[0.021-0.03] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688272	1E-13		0.017889872	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688264	4E-18		0.021024257	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.68814	7E-12		0.0163215	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688299	2E-70		0.04278302	[0.038-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.68825	9E-68		0.04223371	[0.037-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688137	8E-46		0.0327796	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688126	1E-31		0.027836597	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p24.3	KAT2B	rs12636078-G	0.688312	2E-15		0.019078687	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs12636078-G	0.62007	7E-13				Affymetrix, Illumina [24332387] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs12636078-G	0.628441	2E-67				Affymetrix, Illumina [24246363] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p24.3	NR	rs12636078-G	0.686012	3E-58		0.031557	[0.028-0.035] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs12636078-G	0.625443	6E-44				Affymetrix, Illumina [20825802] (imputed)	N
738	chr3	20105672	20105673	rs12636078	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p24.3	NR	rs12636078-G	0.687196	2E-39		0.027378	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
738	chr3	20105672	20105673	rs12636078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.3		rs12636078-?	NR	1E-13				NR [~ 8900000] (imputed)	N
738	chr3	20105672	20105673	rs12636078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.3		rs12636078-?	NR	4E-40				NR [~ 8900000] (imputed)	N
738	chr3	20105672	20105673	rs12636078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p24.3	KAT2B	rs12636078-G	0.6875	9E-15		0.0297035	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
738	chr3	20105672	20105673	rs12636078	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p24.3	KAT2B	rs12636078-G	0.6875	3E-12		0.02681431	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
738	chr3	20108545	20108546	rs1124376	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.3	NR	rs1124376-?	NR	5E-6		1.2753	[NR]	Affymetrix [722112]	N
738	chr3	20110070	20110071	rs2929392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p24.3		rs2929392-?	NR	3E-11				NR [~ 8900000] (imputed)	N
738	chr3	20111444	20111445	rs2623079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p24.3		rs2623079-?	NR	1E-8				NR [~ 8900000] (imputed)	N
738	chr3	20111545	20111546	rs61440199	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	3p24.3	KAT2B, SGOL1, PP2D1, SGOL1-AS1, MIR3135A	rs61440199-A	0.03	9E-9		8.68	[4.16-18.13]	Affymetrix, Illumina [at least 603042] (imputed)	N
738	chr3	20111607	20111608	rs2948094	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.3	Intergenic	rs2948094-A	0.3733	2E-10	(MTAG)	0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
738	chr3	20113988	20113989	rs3749180	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p24.3	NR	rs3749180-A	0.391038	5E-13		0.0228662	[0.017-0.029] unit increase	NR [19129689] (imputed)	N
738	chr3	20117038	20117039	rs4858757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p24.3	Intergenic	rs4858757-T	0.5879	5E-10		0.0143	[0.0098-0.0188] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
738	chr3	20117232	20117233	rs4858758	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.3	KAT2B	rs4858758-T	0.3923	7E-18		0.2318	[0.18-0.28] mmHg decrease	Affymetrix [NR] (imputed)	N
738	chr3	20136958	20136959	rs12636856	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (rapamycin)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	3p24.3	PCAF	rs12636856-?	NR	7E-6		0.28	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
738	chr3	20163555	20163556	rs13072623	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p24.3	NR	rs13072623-G	0.43266800000000005	5E-9		0.0153889	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
738	chr3	20177471	20177472	rs9829896	26202629	Johnson EO	2016-07-23	Addict Biol	KAT2B polymorphism identified for drug abuse in African Americans with regulatory links to drug abuse pathways in human prefrontal cortex.	Drug abuse	2,017 African American ancestry cases, 1,142 European ancestry cases,1,725 African American ancestry controls,  5,703 European ancestry controls	259 African American ancestry cases, 273 European ancestry cases, 496 African American ancestry controls, 858 European ancestry controls	3p24.3	KAT2B	rs9829896-?	0.78	4E-10	(AA)	1.47	[1.27-2.86]	Illumina [at least 6727359] (imputed)	N
739	chr3	20186296	20186297	rs6808694	27997041	Traylor M	2016-12-20	Ann Neurol	Genetic variation at 16q24.2 is associated with small vessel stroke.	Ischemic stroke	10,210 European ancestry cases, 12,285 European ancestry controls	7,743 European ancestry cases, 17,970 European ancestry controls	3p24.3	NR	rs6808694-?	NR	8E-6		4.458	z score increase	Affymetrix, Illumina [NR] (imputed)	N
739	chr3	20208105	20208106	rs55794899	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p24.3	SGOL1	rs55794899-G	0.114351	4E-12		0.024303632	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
739	chr3	20220711	20220712	rs6767049	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	3p24.3	SGOL1	rs6767049-?	NR	2E-6	(Dysthymic)	0.77	[NR] unit decrease	Affymetrix [703012]	N
739	chr3	20278274	20278275	rs9833147	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	3p24.3		rs9833147-T	0.227726827	6E-6		0.014385267	[0.0082-0.0206] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
739	chr3	20295099	20295100	rs139992073	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Systolic blood pressure	815 African ancestry early adolescents	NA	3p24.3	SGOL1, SGOL-ASI	rs139992073-C	0.14	1E-6		2.83	[-8.4204-14.0804] unit increase	Illumina [20074711] (imputed)	N
739	chr3	20298060	20298061	rs141428560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p24.3	NR	rs141428560-A	NR	4E-9		0.0654	[0.043-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
739	chr3	20298060	20298061	rs141428560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p24.3	NR	rs141428560-A	NR	3E-9		0.0662	[0.044-0.088] unit increase	Affymetrix [9000000] (imputed)	N
740	chr3	20342263	20342264	rs9846056	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to wear a physical activity monitor	96,035 European ancestry cases, 119,092 European ancestry controls	NA	3p24.3	NR	rs9846056-T	0.37	3E-8		0.93	[0.91, 0.96]	Affymetrix [39302896] (imputed)	N
740	chr3	20352765	20352766	rs9871864	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	3p24.3	NR	rs9871864-G	0.464	6E-6	(Alcohol dependence)			Illumina [527829]	N
740	chr3	20357926	20357927	rs4588384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p24.3	Intergenic	rs4588384-G	0.1578	2E-10		0.0197	[0.014-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
740	chr3	20359580	20359581	rs4241505	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.3	Intergenic	rs4241505-C	0.8419	3E-8	(MTAG)	0.0125	[0.008-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
740	chr3	20398641	20398642	rs12488353	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p24.3		rs12488353-C	NR	5E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
740	chr3	20428078	20428079	rs1829494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p24.3		rs1829494-A	NR	7E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
740	chr3	20432032	20432033	rs34373881	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p24.3	SGOL1	rs34373881-G	0.724699	9E-9		0.00883268	[0.0058-0.0118] unit increase	Affymetrix [12370749]	N
740	chr3	20432032	20432033	rs34373881	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p24.3		rs34373881-?	NR	1E-10				NR [~ 8900000] (imputed)	N
741	chr3	20487699	20487700	rs4858204	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls, 686 East Asian ancestry schizophrenia female cases, 1,907 East Asian ancestry female controls, 1,150 East Asian ancestry schizophrenia male cases, 1,476 East Asian ancestry male controls	NA	3p24.3	LOC101927829, VENTXP7	rs4858204-A	0.4085	2E-6	(female)	0.0532	[0.031-0.075] unit decrease	NR [NR] (imputed)	N
741	chr3	20487699	20487700	rs4858204	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder	11,361 European ancestry schizophrenia female cases, 20,206 European ancestry schizophrenia male cases, 11,897 European ancestry bipolar disorder female cases, 8,027 European ancestry bipolar disorder male cases, 10,865 European ancestry major depressive disorder female cases, 5,105 major depressive disorder male cases, 46,410 European ancestry female controls, 46,615 European ancestry male controls	NA	3p24.3	LOC101927829, VENTXP7	rs4858204-A	NR	4E-6	(female)	0.0518	[0.03-0.074] unit decrease	NR [NR] (imputed)	N
741	chr3	20506228	20506229	rs4858207	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p24.3	NR	rs4858207-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
741	chr3	20512960	20512961	rs6769567	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs6769567-T	0.5313	2E-9	(conditional-joint)	0.0085	[0.0058-0.0112] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
741	chr3	20512960	20512961	rs6769567	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs6769567-T	0.5313	3E-12	(MTAG)	0.0091	[0.0066-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
741	chr3	20516529	20516530	rs595551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p24.3	Intergenic	rs595551-A	0.369	1E-11		0.0159	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
741	chr3	20518907	20518908	rs1520042	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	3p24.3	Intergenic	rs1520042-C	NR	5E-6		3.38		Illumina [2711511] (imputed)	N
741	chr3	20519543	20519544	rs77075415	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	3p24.3	Intergenic	rs77075415-G	NR	5E-6		3.38		Illumina [2711511] (imputed)	N
741	chr3	20527629	20527630	rs582714	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.3	Intergenic	rs582714-A	0.6285	5E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
741	chr3	20573467	20573468	rs1021938	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	3p24.3	NR	rs1021938-?		2E-8				NR [520857]	N
741	chr3	20574234	20574235	rs1403649	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	3p24.3	LOC101927829, VENTXP7	rs1403649-C	0.34	9E-7		0.21	unit decrease	Illumina [5600000] (imputed)	N
742	chr3	20578997	20578998	rs10440098	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p24.3	NA	rs10440098-T	0.6035	1E-8		0.01	[0.0065-0.0135] unit increase	NR [~ 27400000] (imputed)	N
742	chr3	20590250	20590251	rs12489876	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	3p24.3	NR	rs12489876-A	NR	7E-6		1.6235		Affymetrix [8183964] (imputed)	N
742	chr3	20615272	20615273	rs1395103	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.3	NR	rs1395103-?	NR	9E-6		1.2382	[NR]	Affymetrix [722112]	N
742	chr3	20630394	20630395	rs62242105	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis	175,803 European ancestry cases, 644,862 European ancestry controls, 1,265 Japanese ancestry cases, 449 Southern Chinese ancestry cases, 3,330 Japanese ancestry controls, 981 Southern Chinese ancestry controls	NA	3p24.3		rs62242105-A	0.3312	3E-9		0.9715136	[0.962228026-0.980888803]	Affymetrix, Illumina [NR] (imputed)	N
742	chr3	20631297	20631298	rs9866123	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs9866123-A	0.4804	1E-9		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
742	chr3	20641965	20641966	rs148587110	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	3p24.3	Intergenic	rs148587110-C	0.011	1E-6		1.3927578	[NR]	Illumina [9112387] (imputed)	N
742	chr3	20669070	20669071	rs4858241	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	3p24.3	NR	rs4858241-?		2E-8				NR [8028859]	N
742	chr3	20669070	20669071	rs4858241	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	3p24.3	NR	rs4858241-T	NR	5E-7		1.08	[1.05-1.12]	Illumina [~ 1092418] (imputed)	N
742	chr3	20669070	20669071	rs4858241	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	3p24.3	SGO1-AS1	rs4858241-T	NR	1E-6		1.017294	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
743	chr3	20712593	20712594	rs56168640	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p24.3		rs56168640-G	0.723	2E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
743	chr3	20712593	20712594	rs56168640	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.3	NR	rs56168640-T	0.276	2E-8		0.00679051	[0.0044-0.0092] unit decrease	NR [9732723] (imputed)	N
743	chr3	20714579	20714580	rs4857968	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p24.3	NA	rs4857968-A	0.2933	7E-12		0.0125	[0.009-0.016] unit decrease	NR [~ 27400000] (imputed)	N
743	chr3	20714579	20714580	rs4857968	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p24.3	NR	rs4857968-G	NR	1E-16		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
743	chr3	20717928	20717929	rs75430906	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	3p24.3	SGOL1	rs75430906-A	0.001	1E-7		3.46	[1.51-7.96]	Illumina [7300000] (imputed)	N
743	chr3	20725015	20725016	rs56135409	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Attention deficit hyperactivity disorder or amygdala volume (pleiotropy)	19,099 European ancestry ADHD cases, 1,084 ADHD cases, 34,194 European ancestry controls, 997 controls, 11,757 European ancestry individuals	NA	3p24.3	intergenic	rs56135409-A	NR	2E-9		6.01	NR z score decrease	NR [up to 8601199] (imputed)	N
743	chr3	20725015	20725016	rs56135409	30478444	Demontis D	2018-11-26	Nat Genet	Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	19,099 European ancestry cases, 72 non-European ancestry cases, 1,012 Han Chinese ancestry cases, 34,194 European ancestry controls, 72 non-European ancestry controls, 925 Han Chinese ancestry controls	5,085 Icelandic ancestry cases, 5,857 cases, 131,122 Icelandic ancestry controls, 70,393 controls	3p24.3	SGO1-AS1	rs56135409-C	NR	5E-8		1.0309278	NR	Affymetrix, Illumina, Perlegen [8047421] (imputed)	N
743	chr3	20725015	20725016	rs56135409	29325848	Martin J	2017-12-02	Biol Psychiatry	A Genetic Investigation of Sex Bias in the Prevalence of Attention-Deficit/Hyperactivity Disorder.	Attention deficit hyperactivity disorder	14,154 European ancestry male cases, 17,948 European ancestry male controls	NA	3p24.3	intergenic	rs56135409-A	NR	6E-7	(males)	0.087	[0.054-0.12] unit decrease	Illumina [7531543] (imputed)	N
743	chr3	20729090	20729091	rs4858253	30610198	Soler Artigas M	2019-01-04	Mol Psychiatry	Attention-deficit/hyperactivity disorder and lifetime cannabis use: genetic overlap and causality.	Attention deficit hyperactivity disorder or cannabis use	18,345 European ancestry ADHD cases, 14,374 European ancestry cannabis use cases, 50,410 European ancestry controls	NA	3p24.3	intergenic	rs4858253-C	NR	2E-8		1.0638298	[1.04-1.09]	NR [5009020] (imputed)	N
743	chr3	20754809	20754810	rs78452735	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p24.3	NR	rs78452735-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
743	chr3	20766559	20766560	rs17810229	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.3	NR	rs17810229-?	NR	9E-9				Affymetrix [NR]	N
743	chr3	20776393	20776394	rs74696548	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis (pre-diagnosis)	27 European ancestry cases, 1,180 European ancestry controls	NA	3p24.3	LOC101927829	rs74696548-G	NR	3E-6		5.1	NR	Illumina [602644]	N
743	chr3	20809317	20809318	rs116105909	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3p24.3	SGO1-AS1	rs116105909-A	0.0349	2E-6		0.1887	[0.11-0.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
744	chr3	20844884	20844885	rs955901	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	ZNF659	rs955901-?	NR	7E-6	(xanthine)	0.29696	[0.17-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
744	chr3	20915513	20915514	rs11718323	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	3p24.3	NR	rs11718323-?		2E-6		9.527	[6.66-12.39] unit increase	Illumina [~ 4900000] (imputed)	N
744	chr3	20940842	20940843	rs11720887	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Proteinuria and chronic kidney disease	294 European ancestry child cases, 1,347 European ancestry child controls	NA	3p24.3	VENTXP7	rs11720887-A	0.13	4E-6		1.87	[1.44-2.43]	Illumina [~ 10500000] (imputed)	N
744	chr3	20957809	20957810	rs6787231	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p24.3	NR	rs6787231-C	0.900662045838896	5E-6	(IGP8)	0.261	[0.15-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
744	chr3	20957809	20957810	rs6787231	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p24.3	NR	rs6787231-C	0.900662045838896	5E-6	(IGP48)	0.2602	[0.15-0.37] unit decrease	Illumina [~ 2500000] (imputed)	N
745	chr3	21000124	21000125	rs17812823	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.3	NR	rs17812823-?	NR	1E-22				Affymetrix [NR]	N
745	chr3	21025951	21025952	rs73188336	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	3p24.3	VENTXP7	rs73188336-T		2E-6	(EA)	4.23	[1.16-15.4]	Affymetrix, Illumina [NR] (imputed)	N
746	chr3	21220364	21220365	rs113999746	34563919	Chiba Y	2021-09-20	J Neurol Sci	Genetic and demographic predisposing factors associated with pediatric sleepwalking in the Philadelphia Neurodevelopmental Cohort.	Sleepwalking	155 African American cases, 2,598 African American controls	NA	3p24.3		rs113999746-?	NR	8E-7		4.458		Illumina [NR] (imputed)	N
747	chr3	21248641	21248642	rs11720452	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p24.3	NR	rs11720452-?	0.58	5E-6		1.15	[NR]	Affymetrix [1769948] (imputed)	N
747	chr3	21265539	21265540	rs9831928	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Atorvastatin-induced myopathy	28 European ancestry cases, 2,501 controls	NA	3p24.3	intergenic	rs9831928-?	NR	3E-6		4.7619047	[2.17-11.11]	Illumina [654642] (imputed)	N
747	chr3	21339375	21339376	rs1436846	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.3	NR	rs1436846-?	NR	2E-6				Affymetrix [NR]	N
748	chr3	21380090	21380091	rs17548918	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	3p24.3	intergenic	rs17548918-C		9E-6	(AA, factor score analysis)	0.26	[NR] unit increase	Affymetrix [up to 730090]	N
748	chr3	21391397	21391398	rs6802896	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	3p24.3	ZNF385D	rs6802896-T	NR	7E-9	(CER(40:1;2))	0.3318	[0.22-0.44] unit increase	Illumina [~ 9300000] (imputed)	N
748	chr3	21393247	21393248	rs13070110	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	3p24.3	ZNF385D	rs13070110-C	NR	5E-9	(CER(42:1;2))	0.3321	[0.22-0.44] unit increase	Illumina [~ 9300000] (imputed)	N
748	chr3	21393247	21393248	rs13070110	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Ceramide levels	2,045 European ancestry individuals	NA	3p24.3	ZNF385D	rs13070110-C	NR	4E-9	(Total_CER)	0.3302	[0.22-0.44] unit increase	Illumina [~ 9300000] (imputed)	N
748	chr3	21447335	21447336	rs409974	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.3	NR	rs409974-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
748	chr3	21456185	21456186	rs7637427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.3	Intergenic	rs7637427-T	0.7349	2E-9	(MTAG)	0.0112	[0.0075-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
748	chr3	21474943	21474944	rs74584681	31792241	Gouveia MH	2019-12-02	Sci Rep	Genetics of cognitive trajectory in Brazilians: 15 years of follow-up from the Bambui-Epigen Cohort Study of Aging.	Cognitive decline (age-related)	1,407 Brazilian ancestry individuals	NA	3p24.3		rs74584681-?	NR	2E-7		0.04385	unit decrease	Illumina [at least 2500000] (imputed)	N
749	chr3	21500323	21500324	rs399821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.3		rs399821-A	0.5321	2E-8		0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
749	chr3	21500323	21500324	rs399821	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.3	Intergenic	rs399821-A	0.5321	2E-9	(MTAG)	0.0079	[0.0054-0.0104] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
749	chr3	21605275	21605276	rs17009032	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	SGOL1	rs17009032-?	NR	8E-6	(serine)	0.4651881	[0.26-0.67] unit increase	Affymetrix [at least 2500000] (imputed)	N
749	chr3	21615438	21615439	rs1841915	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Treatment resistant depression	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	3p24.3	ZNF385D-AS1	rs1841915-?	0.61	1E-6		1.8518518	[1.45-2.33]	Affymetrix, Illumina [7000000] (imputed)	N
750	chr3	21636542	21636543	rs1382167	25517131	Dijkstra AE	2015-02-27	Am J Respir Crit Care Med	Novel genes for airway wall thickness identified with combined genome-wide association and expression analyses.	Airway wall thickness	2,640 individuals	up to 714 individuals	3p24.3	ZNF385D	rs1382167-?	NR	8E-6	(Males only)	0.045	[NR] unit increase	Illumina [522636]	N
750	chr3	21636877	21636878	rs58466369	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p24.3	ZNF385D	rs58466369-?		1E-6				Illumina [4322238] (imputed)	N
750	chr3	21706368	21706369	rs3821396	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Bipolar disorder	4,387 European and unknown ancestry cases, 6,209 European and unknown ancestry controls	NA	3p24.3	ZNF385D	rs3821396-?	NR	5E-6				Affymetrix [1769948] (imputed)	N
750	chr3	21706368	21706369	rs3821396	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p24.3	NR	rs3821396-A	0.11	5E-6		1.23	[NR]	Affymetrix [1769948] (imputed)	N
750	chr3	21718840	21718841	rs9816269	23362303	Wu JH	2013-01-29	Circ Cardiovasc Genet	Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	Palmitic acid (16:0) levels	8,961 European ancestry individuals		3p24.3	ZNF659	rs9816269-T	NR	5E-6		0.3667	unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
750	chr3	21719245	21719246	rs1490157	20522523	Kasperaviciute D	2010-06-03	Brain	Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study.	Partial epilepsies	Up to 3,445 European ancestry cases, 6,935 European ancestry controls	NA	3p24.3	ZNF385D	rs1490157-?	0.739	5E-6		1.2	[1.11-1.32]	Illumina [528745]	N
750	chr3	21730245	21730246	rs7615960	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p24.3	ZNF385D	rs7615960-A	0.93	2E-8		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
750	chr3	21732443	21732444	rs11706806	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	3p24.3	NR	rs11706806-G	0.2763	4E-6		16.612	[16.4-16.83]	Illumina [10000612] (imputed)	N
751	chr3	21759603	21759604	rs73046248	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	3p24.3	NR	rs73046248-?	0.04	4E-7		2.4	[1.71-3.36]	Affymetrix, Illumina [~ 6000000] (imputed)	N
751	chr3	21794731	21794732	rs138978150	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Raoultella abundance in stool	5,959 Finnish ancestry individuals	NA	3p24.3		rs138978150-T	0.0101886	3E-8		0.195659	[0.13-0.26] unit increase	Illumina [7980478] (imputed)	N
751	chr3	21820099	21820100	rs75853460	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p24.3	Intergenic	rs75853460-A	0.1119	9E-9	(MTAG)	0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	1E-5				Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	3E-6				Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	3E-6		0.0345	[0.02-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	1E-6		0.0357	[0.021-0.05] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	1E-6		0.0353	[0.021-0.049] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21831939	21831940	rs55794313	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	3p24.3	ZNF385D	rs55794313-T	0.1902	4E-6		0.0336	[0.019-0.048] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
751	chr3	21875125	21875126	rs2630788	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	3p24.3	NR	rs2630788-?	NR	8E-7	(genus_Anaerostipes)	1.019148	[0.64-1.4] unit increase	Affymetrix [210924]	N
751	chr3	21875125	21875126	rs2630788	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	3p24.3	NR	rs2630788-?		4E-8	(genus_Anaerostipes)	0.9837498	[0.65-1.32] unit increase	Affymetrix [212153]	N
751	chr3	21888170	21888171	rs1515451	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	3p24.3	Intergenic	rs1515451-G	0.46	2E-6	(recessive)	0.12	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
751	chr3	21888476	21888477	rs1356100	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	3p24.3	Intergenic	rs1356100-A	0.49	2E-6	(dominant)	0.11	[NR] unit increase	Illumina [at least 2149245] (imputed)	N
752	chr3	21889994	21889995	rs12489919	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Word spelling	3,399 European ancestry individuals	NA	3p24.3	ZNF385D	rs12489919-A	0.720347143	2E-6		0.141854	[0.083-0.201] unit decrease	Illumina [6969139] (imputed)	N
752	chr3	21935110	21935111	rs9826135	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3p24.3	ZNF385D-AS2	rs9826135-T	0.2306	2E-6		0.0057	[0.0033-0.0081] unit increase	Affymetrix [~ 7740000] (imputed)	N
752	chr3	21954838	21954839	rs541594711	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime nap	113,054 European ancestry cases and controls	NA	3p24.3	NR	rs541594711-A	0.0017	2E-8		0.3	[0.2-0.4] unit increase	Affymetrix [at least 12428592] (imputed)	N
752	chr3	21955197	21955198	rs11719664	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p24.3	intergenic	rs11719664-?	NR	2E-6	(count)			Perlegen [429981]	N
753	chr3	22022600	22022601	rs13095800	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	UBE2E2	rs13095800-?	NR	2E-6	(dimethylglycine)	0.17563671	[0.1-0.25] unit decrease	Affymetrix [at least 2500000] (imputed)	N
753	chr3	22023519	22023520	rs2336522	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	3p24.3	ZNF385D-AS2	rs2336522-?	NR	5E-6				Affymetrix, Illumina [15642250] (imputed)	N
753	chr3	22117735	22117736	rs1383086	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	3p24.3	ZNF385D	rs1383086-T		2E-6		0.853	[0.794-0.916]	Illumina [4498586] (imputed)	N
753	chr3	22122395	22122396	rs2593321	20205591	Pelak K	2010-04-15	J Infect Dis	Host determinants of HIV-1 control in African Americans.	HIV-1 viral setpoint	515 African American cases	NA	3p24.3	AC023798.16	rs2593321-?	0.23	8E-6				Illumina [1212217]	N
754	chr3	22171296	22171297	rs6797769	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p24.3	NR	rs6797769-T	0.548041472743521	3E-6	(IGP74)	0.1661	[0.097-0.235] unit decrease	Illumina [~ 2500000] (imputed)	N
754	chr3	22196320	22196321	rs116317518	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p24.3	ZNF385D	rs116317518-T	0.959	2E-6		0.14	NR unit decrease	Illumina [NR] (imputed)	N
754	chr3	22271256	22271257	rs73145075	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p24.3	NR	rs73145075-?	NR	4E-6		10662.367	NR unit decrease	Illumina [2379855]	N
754	chr3	22281577	22281578	rs2638163	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3p24.3	ZNF385D	rs2638163-G	NR	4E-6		0.15316685	[0.088-0.219] unit increase	Affymetrix [9576485] (imputed)	N
755	chr3	22292570	22292571	rs1388551	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (recreational physical activity interaction)	8,203 African American females, 3,484 Hispanic females	NA	3p24.3	LOC728516, ZNF385D	rs1388551-A	0.17	2E-6	(AA)	0.07	[0.04-0.10] unit decrease	Affymetrix [706791]	N
755	chr3	22343570	22343571	rs1874088	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	3p24.3	NR	rs1874088-C	NR	2E-6		0.00989	[0.0058-0.014] unit increase	Illumina [~ 540852]	N
755	chr3	22356929	22356930	rs1389663	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (recipient effect)	291 European ancestry recipients with acute graft versus host disease, 288 European ancestry recipients without acute graft versus host disease	NA	3p24.3	ZNF385D	rs1389663-?	NR	7E-10				Affymetrix [905761]	N
755	chr3	22405306	22405307	rs150765348	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.3	ZNF385D	rs150765348-C	1.0	2E-6	(AA)	0.426	unit increase	Illumina [NR] (imputed)	N
756	chr3	22423337	22423338	rs4472062	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	3p24.3	ZNF385D-AS2, UBE2E2	rs4472062-G	0.29	6E-6		0.23	unit decrease	Illumina [5600000] (imputed)	N
756	chr3	22430821	22430822	rs181391108	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.3	Intergenic	rs181391108-C	1.0	3E-6	(AA)	0.425	unit increase	Illumina [NR] (imputed)	N
756	chr3	22438595	22438596	rs7617696	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	3p24.3	NR	rs7617696-A	0.4647	2E-6		0.1467	[0.086-0.207] unit decrease	Illumina [10677593] (imputed)	N
756	chr3	22457662	22457663	rs1548137	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p24.3	NR	rs1548137-?		9E-7				Illumina [4322238] (imputed)	N
756	chr3	22473728	22473729	rs17011371	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	3p24.3	ZNF385D	rs17011371-A	0.95	6E-6	(Age 20-81 years)	2.09	[1.52-2.88]	Affymetrix, Illumina [up to 17585496] (imputed)	N
756	chr3	22512152	22512153	rs9861382	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	UBE2E2	rs9861382-?	NR	2E-6	(3-methyladipate; pimelate)	0.18218146	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
757	chr3	22592320	22592321	rs11129078	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	3p24.3	UBE2E2	rs11129078-G	0.751	3E-21		0.057	[0.045-0.069] unit increase	Illumina [7428049] (imputed)	N
757	chr3	22604456	22604457	rs4858419	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p24.3	HMGB1P5, ZNF385D	rs4858419-T	NR	2E-7	(daytime napping duration)	0.09356	[0.058-0.129] unit decrease	Affymetrix [7141204] (imputed)	N
757	chr3	22633760	22633761	rs6550704	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p24.3	HMGB1P5, ZNF385D	rs6550704-A	NR	5E-8	(daytime napping duration, weekdays)	0.0943	[0.06-0.128] unit decrease	Affymetrix [7141204] (imputed)	N
757	chr3	22669625	22669626	rs190853916	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.3	NR	rs190853916-?	NR	3E-9				Illumina [7760689] (imputed)	N
758	chr3	22803518	22803519	rs76924951	29868124	Wu Y	2018-05-16	Front Genet	Genetics of Obesity Traits: A Bivariate Genome-Wide Association Analysis.	Body mass index and waist-hip ratio (pleiotropy)	139 Han Chinese ancestry dizygotic twin pairs	NA	3p24.3	LOC100421669	rs76924951-?	NR	9E-6		0.04	[NR] unit decrease	Illumina [1365181]	N
759	chr3	22841825	22841826	rs33117	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar height	665 European ancestry individuals	NA	3p24.3	intergenic	rs33117-C	0.43	3E-6		0.2543	[0.15-0.36] unit decrease	Illumina [298150]	N
759	chr3	22869355	22869356	rs582066	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	3p24.3	ZNF385D-AS2, UBE2E2	rs582066-A		6E-6		0.328	[0.19-0.47] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
759	chr3	22876754	22876755	rs749519604	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p24.3	RP11-1037D22.1	rs749519604-A	0.0019	7E-6		0.6775	[0.38-0.97] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
760	chr3	22946171	22946172	rs698224	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	UBE2E2	rs698224-?	NR	2E-6	(indoxyl sulfate)	0.21782635	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
760	chr3	22975185	22975186	rs148471206	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p24.3	Intergenic	rs148471206-T	NR	5E-7	(between families)	5.023	unit increase	Affymetrix [up to 15107142] (imputed)	N
760	chr3	23013957	23013958	rs822203	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p24.3	NR	rs822203-?	NR	3E-6	(Japanese)	0.1429	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
760	chr3	23034967	23034968	rs520417	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	UBE2E1	rs520417-?	NR	3E-6	(glucuronate)	0.33715442	[0.2-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
761	chr3	23077760	23077761	rs2688419	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3p24.3	SALL4P5	rs2688419-T	0.652	5E-6	(Japanese)	1.07	[1.04-1.1]	Illumina [7521072] (imputed)	N
761	chr3	23093573	23093574	rs9310709	20686651	Gudbjartsson DF	2010-07-29	PLoS Genet	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	3p24.3	NR	rs9310709-C	0.41	2E-6	(CKD)	1.15	[1.09-1.22]	Illumina [~ 2500000] (imputed)	N
761	chr3	23113976	23113977	rs7633787	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 7, width of cartilaginous portion of nose)	2,187 European ancestry individuals	NA	3p24.3	NR	rs7633787-G	0.4516	5E-6		0.1359	[0.078-0.194] unit decrease	Illumina [10677593] (imputed)	N
761	chr3	23124053	23124054	rs73821158	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs73821158-C	0.01916	3E-8	(SERPING1)	0.08191	NR unit increase	Illumina [1671387] (imputed)	N
761	chr3	23125988	23125989	rs79143957	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3p24.3	intergenic	rs79143957-A	0.012	4E-6		5.54	[2.46-12.47]	Illumina [1556551]	N
761	chr3	23131702	23131703	rs6550722	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p24.3		rs6550722-A	NR	2E-9		0.0131	[0.0088-0.0174] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
761	chr3	23153061	23153062	rs7618603	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p24.3	NR	rs7618603-A	NR	4E-12		1.06	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
761	chr3	23156819	23156820	rs3884629	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.3	UBE2E2	rs3884629-?	NR	1E-7	(indoxyl sulfate)	0.21298784	[0.13-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
761	chr3	23161677	23161678	rs73040019	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p24.3	intergenic	rs73040019-T	0.8419	2E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix [18391927] (imputed)	N
761	chr3	23163748	23163749	rs4634143	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p24.3	UBE2E2	rs4634143-T	0.2975	9E-12		0.1129	[0.08-0.145] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
761	chr3	23165700	23165701	rs116806118	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		3p24.3	NR	rs116806118-T	0.005	5E-6		3.34	[1.99-5.61]	Illumina [~ 8000000] (imputed)	N
761	chr3	23177933	23177934	rs73040036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p24.3		rs73040036-?	NR	2E-8				NR [~ 8900000] (imputed)	N
761	chr3	23180572	23180573	rs9876201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.3		rs9876201-?	NR	3E-13				NR [~ 8900000] (imputed)	N
761	chr3	23193559	23193560	rs4331690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p24.3		rs4331690-C	NR	9E-11		0.0097	[0.0068-0.0126] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
761	chr3	23193927	23193928	rs4619807	24132900	Kanazawa T	2013-10-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of atypical psychosis.	Psychosis (atypical)	47 Japanese ancestry cases, 882 Japanese ancestry controls	NA	3p24.3	UBE2E2, RPL24P7	rs4619807-?		2E-6				Affymetrix [545513]	N
761	chr3	23197963	23197964	rs12152551	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p24.3	NR	rs12152551-A	NR	4E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix [9000000] (imputed)	N
761	chr3	23198483	23198484	rs6780569	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	3p24.3	UBE2E2	rs6780569-G	0.83	4E-7		1.17	[1.10-1.24]	Illumina [6209637] (imputed)	N
762	chr3	23203453	23203454	rs7374732	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio adjusted for BMI	7,618 European ancestry women, 7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	3p24.3	UBE2E2	rs7374732-T	0.69	2E-8		5.64	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
762	chr3	23203453	23203454	rs7374732	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio	7,618 European ancestry women,  7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	3p24.3	UBE2E2	rs7374732-T	0.69	3E-10		6.29	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
762	chr3	23203453	23203454	rs7374732	27918534	Chu AY	2016-12-05	Nat Genet	Multiethnic genome-wide meta-analysis of ectopic fat depots identifies loci associated with adipocyte development and differentiation.	Visceral adipose tissue/subcutaneous adipose tissue ratio	7,618 European ancestry women,  7,050 European ancestry men, 2,205 African American women, 1,324 African American men.	NA	3p24.3	UBE2E2	rs7374732-T	0.63	3E-7	(EA)	5.1	z-score decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
762	chr3	23208341	23208342	rs7640945	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p24.3	NR	rs7640945-C	0.276	5E-7	(IFNGR1_of_CD20p)			Illumina [5084123] (imputed)	N
762	chr3	23224683	23224684	rs73050286	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p24.3	UBE2E2	rs73050286-T	0.7817	4E-11		1.0301454		Affymetrix [11880941] (imputed)	N
762	chr3	23235391	23235392	rs114476339	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs114476339-C	0.0122	8E-9	(EHHADH)	1.738	NR unit increase	Illumina [1671387] (imputed)	N
762	chr3	23240670	23240671	rs1032501	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Reaction time	330,024 British ancestry individuals	NA	3p24.3		rs1032501-?	NR	1E-8				NR [7857346] (imputed)	N
762	chr3	23240670	23240671	rs1032501	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p24.3	UBE2E2-AS1	rs1032501-?	NR	1E-8		0.010036	[0.0066-0.0135] unit increase	Affymetrix [805426] (imputed)	N
762	chr3	23258613	23258614	rs11926494	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3p24.3	UBE2E2	rs11926494-G	0.82	3E-37		1.12	[1.10-1.14]	Affymetrix, Illumina [11800000] (imputed)	N
762	chr3	23265406	23265407	rs57055494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p24.3		rs57055494-C	NR	1E-11		0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
762	chr3	23280695	23280696	rs73033558	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p24.3	NR	rs73033558-T	0.059	6E-6	(IFNgamma_ABC_of_monocytes)			Illumina [5084123] (imputed)	N
762	chr3	23280825	23280826	rs2359637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p24.3		rs2359637-C	NR	3E-11		0.0116	[0.0083-0.0149] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
762	chr3	23284302	23284303	rs114460169	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3p24.3	UBE2E2	rs114460169-?		2E-9				Illumina [5041948] (imputed)	N
762	chr3	23330100	23330101	rs7428484	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p24.3		rs7428484-A	0.6734	2E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
762	chr3	23330100	23330101	rs7428484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p24.3		rs7428484-?	NR	1E-8				NR [~ 8900000] (imputed)	N
763	chr3	23336449	23336450	rs7612463	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3p24.3	UBE2E2	rs7612463-A	0.1322	4E-14		0.098	[0.073-0.123] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
763	chr3	23336449	23336450	rs7612463	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3p24.3	UBE2E2	rs7612463-C	0.87	7E-9		1.1	[1.04-1.16]	Affymetrix, Illumina [2500000] (imputed)	N
763	chr3	23349495	23349496	rs4858496	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p24.3	NR	rs4858496-?	NR	5E-7		0.0087329	[0.0053-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
763	chr3	23388881	23388882	rs140198067	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs140198067-T	0.273473	4E-12				Affymetrix, Illumina [24653286] (imputed)	N
763	chr3	23390487	23390488	rs12630883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p24.3		rs12630883-A	0.336721579	3E-23		0.09680092	[0.078-0.116] unit decrease	Illumina [13429769] (imputed)	N
763	chr3	23390487	23390488	rs12630883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3p24.3		rs12630883-A	0.33210953	1E-16		0.08622745	[0.066-0.107] unit decrease	Illumina [13134967] (imputed)	N
763	chr3	23390506	23390507	rs12633613	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3p24.3		rs12633613-C	0.333956966	5E-25		0.91351265	[0.897966557-0.929327822]	Illumina [8919992] (imputed)	N
763	chr3	23390506	23390507	rs12633613	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3p24.3	UBE2E2	rs12633613-T	0.67	3E-23		1.1	1.08-1.12	Illumina [12557761] (imputed)	N
763	chr3	23394438	23394439	rs7634699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7634699-G	0.27624	1E-12				Affymetrix, Illumina [24332387] (imputed)	N
763	chr3	23394438	23394439	rs7634699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.3	NR	rs7634699-G	0.275302	1E-13				Affymetrix, Illumina [24558453] (imputed)	N
763	chr3	23394438	23394439	rs7634699	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p24.3	NR	rs7634699-G	0.257284	7E-15		0.017255	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
763	chr3	23395310	23395312	rs145886884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.3	UBE2E2	rs145886884-A	0.250594	1E-12		0.018271029	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
763	chr3	23395310	23395312	rs145886884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p24.3	UBE2E2	rs145886884-A	0.250629	1E-11		0.017420277	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
763	chr3	23395310	23395312	rs145886884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p24.3	UBE2E2	rs145886884-A	0.250613	3E-12		0.017974503	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
763	chr3	23396319	23396320	rs148462165	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	3p24.3	NR	rs148462165-C	0.6674	1E-22		0.0911	[0.073-0.109] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
763	chr3	23434533	23434534	rs778486	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	3p24.3	NR	rs778486-A	0.41	2E-8		1.03	[1.02, 1.03]	Affymetrix [39302896] (imputed)	N
763	chr3	23454564	23454565	rs1845900	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3p24.3	UBE2E2	rs1845900-A	NR	2E-14	(Japanese)	1.17954	[1.13074-1.23045]	Illumina [7521072] (imputed)	N
763	chr3	23454789	23454790	rs1496653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p24.3		rs1496653-G	NR	4E-14		0.0194	[0.014-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
763	chr3	23454789	23454790	rs1496653	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	3p24.3	UBE2E2	rs1496653-G	0.20471	7E-16		0.11598747	[0.088-0.144] unit decrease	Affymetrix [7288503] (imputed)	N
763	chr3	23454789	23454790	rs1496653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3p24.3		rs1496653-?	NR	2E-11				NR [~ 8900000] (imputed)	N
763	chr3	23454789	23454790	rs1496653	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3p24.3	UBE2E2	rs1496653-G	0.204781842750379	3E-18		0.0769	[0.06-0.094] unit decrease	NR [5035015] (imputed)	N
763	chr3	23454789	23454790	rs1496653	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p24.3	UBE2E2	rs1496653-A	NR	4E-7	(men)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
763	chr3	23454789	23454790	rs1496653	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p24.3	UBE2E2	rs1496653-A	0.750927055549185	4E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
763	chr3	23455581	23455582	rs35352848	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p24.3		rs35352848-C	NR	1E-29		0.0881	[0.073-0.103] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
763	chr3	23455581	23455582	rs35352848	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p24.3	NR	rs35352848-C	0.2069	7E-28		0.0623	[0.051-0.073] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
763	chr3	23455581	23455582	rs35352848	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p24.3	UBE2E2	rs35352848-T	0.7878	1E-17		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
763	chr3	23457079	23457080	rs13094957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3p24.3		rs13094957-C	NR	1E-29		0.1118	[0.092-0.131] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
763	chr3	23457079	23457080	rs13094957	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p24.3	NR	rs13094957-C	NR	2E-12		0.0212	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
763	chr3	23457079	23457080	rs13094957	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p24.3	NR	rs13094957-C	0.2196	2E-42		0.0637	[0.054-0.073] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
764	chr3	23478055	23478055	rs534141419	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA		NR	rs534141419-A	0.624671	5E-10		0.0180941	[0.012-0.024] unit increase	Affymetrix [16580851] (imputed)	N
764	chr3	23482811	23482812	rs7611684	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	3p24.3	UBE2E2	rs7611684-A	0.1	3E-6		3.26	[1.98-5.35]	Affymetrix, Illumina [at least 603042] (imputed)	N
764	chr3	23510043	23510044	rs17013314	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p24.3	UBE2E2	rs17013314-G	0.0313	8E-9		1.11	[1.07-1.15]	Affymetrix, Illumina [~ 27000000] (imputed)	N
764	chr3	23512312	23512313	rs35161626	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	3p24.3	UBE2E2	rs35161626-?	NR	3E-8		1.1436414	[1.09-1.2]	Illumina [8966411] (imputed)	N
764	chr3	23521060	23521061	rs9862557	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p24.3	NR	rs9862557-?	NR	1E-7		0.0092597	[0.0058-0.0127] unit increase	Affymetrix [805426] (imputed)	N
764	chr3	23559546	23559547	rs9830388	28039329	Noordam R	2016-12-30	J Med Genet	A genome-wide interaction analysis of tricyclic/tetracyclic antidepressants and RR and QT intervals: a pharmacogenomics study from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortium.	RR interval (tricyclic/tetracyclic antidepressant use interaction)	1,417 European ancestry users, 295 African American users, 174 Hispanic or Latino ancestry users, 44,289  European ancestry non-users, 9,940 African American non-users, 13,634 Hispanic or Latino ancestry non-users	NA	3p24.3	UBE2E2	rs9830388-A	0.51	2E-8	(EA)	25.2	[16.38-34.02] unit increase	Affymetrix, Illumina [NR] (imputed)	N
764	chr3	23567979	23567980	rs11916411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3p24.3		rs11916411-?	NR	1E-10				NR [~ 8900000] (imputed)	N
764	chr3	23570653	23570654	rs11713090	32235003	Arbeev KG	2020-04-01	Aging (Albany NY)	Genetics of physiological dysregulation: findings from the long life family study using joint models.	Physiological dysregulation (Mahalanobis distance)	4,608 European ancestry individuals	NA	3p24.3	UBE2E2	rs11713090-?	NR	3E-6				Illumina [1464300]	N
764	chr3	23586127	23586128	rs56964757	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p24.3		rs56964757-G	NR	3E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
765	chr3	23597985	23597986	rs2036226	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p24.3	UBE2E2	rs2036226-T	0.59	1E-10				NR [> 9500000] (imputed)	N
765	chr3	23602702	23602703	rs201174461	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p24.3		rs201174461-A	NR	3E-9		0.0139	[0.0094-0.0184] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
765	chr3	23606403	23606404	rs55732421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.3		rs55732421-?	NR	5E-12				NR [~ 8900000] (imputed)	N
765	chr3	23614389	23614390	rs71322200	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p24.3	NR	rs71322200-C	0.905677	3E-9		0.0200554	[0.013-0.027] unit decrease	NR [NR]	N
765	chr3	23625666	23625667	rs7634494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p24.3		rs7634494-A	0.160686	2E-9		0.023534	[0.016-0.031] unit increase	Illumina [13479924] (imputed)	N
765	chr3	23629918	23629918	rs112332300	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3p24.3		rs112332300-CT	NR	3E-12	(conditional)	1.0836402	[1.05942295171475-1.10841107245715]	Illumina [8919992] (imputed)	N
765	chr3	23629918	23629918	rs112332300	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3p24.3	UBE2E2	rs112332300-CT	0.46	1E-11	(Conditioned)			Illumina [12557761] (imputed)	N
765	chr3	23638951	23638952	rs113592754	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p24.3		rs113592754-A	NR	3E-9		0.0133	[0.009-0.0176] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
765	chr3	23676012	23676013	rs77685443	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	3p24.3	NR	rs77685443-T	0.0363	7E-7		0.018	[0.011-0.025] unit increase	NR [7666894] (imputed)	N
765	chr3	23688341	23688342	rs148655837	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.3	NR	rs148655837-?	NR	5E-8				Illumina [7760689] (imputed)	N
765	chr3	23709762	23709763	rs55743416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.3	NR	rs55743416-A	0.01568	2E-9	(PRDX3)	2.006	NR unit increase	Illumina [1671387] (imputed)	N
766	chr3	23750520	23750521	rs1037633	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p24.3		rs1037633-G	0.12401	1E-9		0.234	[0.16-0.31] unit increase	Illumina [18238311] (imputed)	N
766	chr3	23755669	23755670	rs145287362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.3	Intergenic	rs145287362-G	0.995	3E-8	(AA)	0.149	unit increase	Illumina [NR] (imputed)	N
766	chr3	23755669	23755670	rs145287362	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.3	Intergenic	rs145287362-G	0.995	3E-6	(AA)	0.632	NR unit increase	Illumina [NR] (imputed)	N
766	chr3	23810373	23810374	rs13080016	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p24.3	AC020626.1	rs13080016-T	0.056	2E-6		1.73	[1.38-2.16]	Illumina [8672852] (imputed)	N
766	chr3	23839883	23839884	rs9851068	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.3	NR	rs9851068-A	NR	4E-9		5.874	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
766	chr3	23839883	23839884	rs9851068	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.3	NR	rs9851068-?	NR	1E-6		4.853	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
766	chr3	23847210	23847211	rs3762767	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	UBE2E1-AS1	rs3762767-A	NR	1E-9		0.02068929	[0.014-0.027] unit decrease	Affymetrix [NR]	N
767	chr3	23862462	23862463	rs6767406	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	3p24.2	UBE2E1	rs6767406-T	NR	7E-6		0.088	[0.051-0.125] unit decrease	Illumina [6319684] (imputed)	N
767	chr3	23878816	23878817	rs13099267	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p24.2		rs13099267-G	0.301	8E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
767	chr3	23878816	23878817	rs13099267	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.2	NR	rs13099267-C	0.698	4E-8		0.00643374	[0.0041-0.0087] unit increase	NR [9732723] (imputed)	N
767	chr3	23901027	23901028	rs6779537	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	3p24.2	UBE2E1	rs6779537-T	NR	2E-6		0.096	[0.055-0.137] unit decrease	Illumina [6319684] (imputed)	N
767	chr3	23904761	23904762	rs28405582	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	3p24.2	LINC00691, NKIRAS1, NR1D2, RPL15, THRB, UBE2E1, UBE2E2	rs28405582-C	0.0002	1E-6		11.67	[2.53-53.75]	Illumina [7300000] (imputed)	N
767	chr3	23907774	23907775	rs17787217	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p24.2	NR	rs17787217-?	NR	5E-6		0.0079376	[0.0045-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
767	chr3	23911938	23911939	rs13085379	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p24.2	Intergenic	rs13085379-G	0.5518	2E-8		0.0111	[0.0072-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
767	chr3	23914942	23914942	rs397988940	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p24.2		rs397988940-AT	NR	2E-8		0.0129	[0.0084-0.0174] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
767	chr3	23933173	23933174	rs2885034	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs2885034-T	NR	9E-9		5.742	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
767	chr3	23943405	23943406	rs11129127	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	NKIRAS1	rs11129127-A	NR	4E-8		0.016971255	[0.011-0.023] unit decrease	Affymetrix [NR]	N
767	chr3	23943598	23943599	rs34476593	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	NKIRAS1	rs34476593-A	NR	2E-11		0.025630234	[0.018-0.033] unit decrease	Affymetrix [NR]	N
767	chr3	23945585	23945586	rs9815334	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs9815334-A	NR	1E-12		7.107	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
767	chr3	23949838	23949839	rs9836970	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.2	NKIRAS1	rs9836970-A	NR	7E-12		6.856	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
767	chr3	23961761	23961762	rs1133926	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	RPL15	rs1133926-A	NR	1E-11		0.025928907	[0.018-0.033] unit increase	Affymetrix [NR]	N
767	chr3	23962645	23962646	rs2001209	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	NKIRAS1, RPL15	rs2001209-A	NR	2E-15		0.025788903	[0.019-0.032] unit increase	Affymetrix [NR]	N
767	chr3	23963182	23963183	rs9755750	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	3p24.2		rs9755750-?	NR	5E-16				NR [7857346] (imputed)	N
767	chr3	23963182	23963183	rs9755750	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	3p24.2		rs9755750-?	NR	6E-9				NR [7857346] (imputed)	N
767	chr3	23966424	23966425	rs7633520	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p24.2	Intergenic	rs7633520-T	0.2734	3E-17	(MTAG)	0.0217	[0.017-0.027] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
767	chr3	23966424	23966425	rs7633520	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.2	NKIRAS1	rs7633520-T	NR	1E-13		7.43	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
768	chr3	23986465	23986466	rs28510558	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	3p24.2	NKIRAS1	rs28510558-G	0.06	2E-6		1.7	[0.99-2.41] g/day increase	Affymetrix [10353649] (imputed)	N
768	chr3	23987841	23987842	rs9862416	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.2	Intergenic	rs9862416-A	0.6723	1E-10	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
768	chr3	23990585	23990586	rs7631394	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	NR1D2	rs7631394-A	NR	2E-8		0.019680243	[0.013-0.027] unit decrease	Affymetrix [NR]	N
768	chr3	23991716	23991717	rs5001573	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.2	Intergenic	rs5001573-C	0.6682	9E-13	(MTAG)	0.0125	[0.009-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
768	chr3	23992804	23992805	rs113730632	33111402	Tan MMX	2020-10-28	Mov Disord	Genome-Wide Association Studies of Cognitive and Motor Progression in Parkinson's Disease.	Parkinson's disease progression (cognitive)	2,788 individuals	NA	3p24.2	NR1D2	rs113730632-G	0.05	2E-6		0.41	[0.23-0.59] unit increase	Illumina [5918868] (imputed)	N
768	chr3	23998649	23998650	rs62253383	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p24.2	Intergenic	rs62253383-T	0.7147	4E-12	(MTAG)	0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
768	chr3	24015139	24015140	rs28522849	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs28522849-A	NR	4E-14		7.554	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
768	chr3	24023482	24023483	rs182162170	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Hepatocyte growth factor levels	21,758 European ancestry individuals	9,173 individuals	3p24.2		rs182162170-A	0.015	7E-7		0.4466	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
768	chr3	24032187	24032187	rs34065125	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p24.2	intergenic	rs34065125-CA	0.456212	3E-6		0.006182	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
768	chr3	24052405	24052406	rs186513784	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.2	NR	rs186513784-?	NR	2E-8				Illumina [7760689] (imputed)	N
768	chr3	24055653	24055654	rs954734	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.2	NR1D2	rs954734-A	NR	1E-12		7.106	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
768	chr3	24062660	24062661	rs6550835	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p24.2	NR	rs6550835-G	0.302187	8E-16		0.055337004	[0.042-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
768	chr3	24062660	24062661	rs6550835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p24.2	Intergenic	rs6550835-A	0.3249	4E-16		0.0248	[0.019-0.031] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
768	chr3	24062660	24062661	rs6550835	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs6550835-A	NR	2E-17		8.471	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
768	chr3	24070054	24070055	rs7431278	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	NR1D2	rs7431278-T	NR	2E-15		0.02483197	[0.019-0.031] unit increase	Affymetrix [NR]	N
768	chr3	24079290	24079291	rs7646501	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	3p24.2	NKIRAS1, NR1D2, RPL15, THRB, UBE2E1	rs7646501-A	0.749	3E-11		6.67	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
768	chr3	24079290	24079291	rs7646501	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	3p24.2	NR1D2	rs7646501-?	NR	2E-8		5.579	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
768	chr3	24079290	24079291	rs7646501	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	3p24.2	NR1D2, LINC00691	rs7646501-A	0.7411	2E-9		6.016	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
768	chr3	24079290	24079291	rs7646501	28530673	Sniekers S	2017-05-22	Nat Genet	Genome-wide association meta-analysis of 78,308 individuals identifies new loci and genes influencing human intelligence.	Intelligence	up to 58,799 European ancestry adults, up to 19,509 European ancestry children	NA	3p24.2	NR1D2, LINC00691	rs7646501-A	0.7411	2E-8	(Adults)	5.634	z score increase	Affymetrix, Illumina [12104294] (imputed)	N
768	chr3	24085165	24085166	rs1112195	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p24.2	NR	rs1112195-G	0.49541900000000005	5E-10		0.0182475	[0.012-0.024] unit increase	Affymetrix [16577424] (imputed)	N
768	chr3	24106646	24106647	rs2089848	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.2		rs2089848-?	NR	6E-15				NR [~ 8900000] (imputed)	N
768	chr3	24113251	24113252	rs6800768	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.2	NR	rs6800768-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
768	chr3	24113696	24113697	rs6801153	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p24.2	LINC00691	rs6801153-?	NR	6E-12		0.016061356	[0.011-0.021] unit decrease	NR [7306098]	N
768	chr3	24113696	24113697	rs6801153	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.2	LINC00691	rs6801153-T	NR	3E-8		5.56	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
768	chr3	24113696	24113697	rs6801153	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p24.2	LINC00691	rs6801153-T	NR	2E-12		0.023696199	[0.017-0.03] unit decrease	Affymetrix [NR]	N
768	chr3	24113696	24113697	rs6801153	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p24.2	LINC00691	rs6801153-?	NR	1E-8		5.71	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
768	chr3	24113696	24113697	rs6801153	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	3p24.2	LINC00691	rs6801153-?	NR	5E-8		5.441	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
769	chr3	24139508	24139509	rs6550846	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p24.2	LINC00691	rs6550846-T	0.7895	2E-15		0.0183	[0.014-0.023] unit increase	Affymetrix [18391927] (imputed)	N
769	chr3	24143217	24143218	rs4561770	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs4561770-C	NR	6E-9		5.816	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
769	chr3	24158396	24158397	rs7428850	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	3p24.2	THRB	rs7428850-T	NR	2E-6	(CPZe)	0.5773	[NR] unit decrease	Illumina [1190033]	N
769	chr3	24159386	24159387	rs1349265	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.2		rs1349265-?	NR	8E-9				NR [~ 8900000] (imputed)	N
769	chr3	24159386	24159387	rs1349265	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p24.2	NR	rs1349265-A	NR	2E-13		7.354	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
769	chr3	24190458	24190459	rs7652234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p24.2		rs7652234-?	NR	5E-13				NR [~ 8900000] (imputed)	N
769	chr3	24202442	24202443	rs13097316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p24.2	THRB	rs13097316-G	0.199864	3E-12		0.019601334	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr3	24202442	24202443	rs13097316	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p24.2	THRB	rs13097316-G	0.199866	8E-13		0.020168064	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
769	chr3	24215556	24215557	rs9310732	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.2	NR	rs9310732-A	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
769	chr3	24219520	24219521	rs4858582	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p24.2	NR	rs4858582-A		3E-10		0.07	[0.05-0.09] unit increase	NR [NR]	N
769	chr3	24219520	24219521	rs4858582	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p24.2	NR	rs4858582-?	NR	9E-6		4.431	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
769	chr3	24231029	24231030	rs1700943	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p24.2	NR1D2, THRB, RARB	rs1700943-?		4E-34				Affymetrix, Illumina [NR] (imputed)	N
769	chr3	24232034	24232035	rs13096529	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p24.2		rs13096529-T	NR	6E-10		0.0183	[0.012-0.024] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
769	chr3	24232034	24232035	rs13096529	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.2	THRB	rs13096529-T	0.191063	2E-13		0.020610474	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
769	chr3	24234231	24234232	rs13065854	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p24.2	NR	rs13065854-T	0.190836	7E-11		0.014	[0.0098-0.0182] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
770	chr3	24256697	24256698	rs4260345	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3p24.2	THRB	rs4260345-T	0.6208	2E-8		5.662	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
770	chr3	24260362	24260363	rs4858590	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	3p24.2		rs4858590-T	NR	1E-10		0.0553	[0.038-0.072] unit increase	Affymetrix, Illumina [25795146] (imputed)	N
770	chr3	24267294	24267295	rs826222	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	3p24.2	NR	rs826222-T	0.6042	3E-8		0.0395	[0.025-0.054] unit increase	Illumina [~ 10600000] (imputed)	N
770	chr3	24268435	24268436	rs826221	24058526	Bhatnagar P	2013-09-13	PLoS One	Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.	Systolic blood pressure in sickle cell anemia	1617 African American cases	NA	3p24.2	THRB	rs826221-A	0.93	7E-6		2.66	[1.50-3.82] mmHg decrease	Illumina [1019297] (imputed)	N
770	chr3	24268676	24268677	rs826220	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	3p24.2	THRB	rs826220-?	NR	2E-12		1.0537407	[1.04-1.07]	Illumina [13762925] (imputed)	N
770	chr3	24282431	24282432	rs12634582	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	3p24.2	THRB, NR1D2, RARB	rs12634582-C	0.38	9E-6	(African)	1.26	[1.14-1.40]	Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
770	chr3	24293000	24293001	rs2044753	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p24.2	THRB	rs2044753-T	0.8682	9E-9		0.0208	[0.014-0.028] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
770	chr3	24298026	24298027	rs138272922	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	3p24.2	NR	rs138272922-C	0.0107319	5E-8		1.16	[1.11-1.21]	Affymetrix [7791636] (imputed)	N
770	chr3	24299610	24299611	rs1667747	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.2	THRB	rs1667747-G	0.238183	2E-9		0.0130243	[0.0088-0.0173] unit increase	NR [13737936] (imputed)	N
770	chr3	24334511	24334511	rs113700287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3p24.2		rs113700287-TTTTG	0.746109	9E-19		0.0326374	[0.025-0.04] unit decrease	Illumina [13479135] (imputed)	N
770	chr3	24334511	24334511	rs113700287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p24.2		rs113700287-TTTTG	NR	6E-164		0.0597	[0.055-0.064] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
770	chr3	24334511	24334511	rs113700287	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p24.2		rs113700287-TTTTG	NR	9E-168		0.0605	[0.056-0.065] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
770	chr3	24334511	24334511	rs113700287	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3p24.2		rs113700287-T	0.326	1E-107		0.26	[-0.28--0.24] % decrease	Affymetrix [NR] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672468	8E-49		0.03546197	[0.031-0.04] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672498	3E-15		0.01879315	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672491	7E-48		0.035241112	[0.03-0.04] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672411	2E-178		0.0664917	[0.062-0.071] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672418	2E-175		0.06698308	[0.062-0.072] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672491	7E-15		0.018820243	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672499	4E-45		0.033806354	[0.029-0.039] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.672519	1E-29		0.027174577	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24334511	24334511	rs113700287	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p24.2	NR	rs113700287-I	0.672443	7E-19		0.019202	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6712	1E-17		0.03296851	[0.025-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6712	2E-30		0.04382223	[0.036-0.051] unit decrease	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6713	6E-75		0.06954615	[0.062-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6712	7E-77		0.07063703	[0.063-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6712	6E-18		0.03329483	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24334511	24334511	rs113700287	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	3p24.2	THRB	rs113700287-TTTTG	0.6712	4E-12		0.0267306	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24339059	24339060	rs1505305	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	3p24.2	THRB	rs1505305-T	0.013	4E-6		3.68	[2.11-6.41]	Illumina [7959153] (imputed)	N
770	chr3	24339733	24339734	rs2167115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p24.2	THRB	rs2167115-G	0.396104	8E-10		0.014225695	[0.0097-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24341263	24341264	rs2361017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs2361017-T	0.693377	5E-12				Affymetrix, Illumina [21126107] (imputed)	N
770	chr3	24341263	24341264	rs2361017	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3p24.2	NR	rs2361017-T	0.678136	9E-14		0.017169	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
770	chr3	24341267	24341268	rs2361016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	3p24.2		rs2361016-?	0.7191	3E-9		0.2602	[0.17-0.35] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
770	chr3	24341267	24341268	rs2361016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	14,483 European ancestry individuals	NA	3p24.2		rs2361016-?	0.6808	1E-6		0.2767	[0.17-0.39] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
770	chr3	24341267	24341268	rs2361016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	3p24.2		rs2361016-?	0.7191	3E-10		0.106	[0.073-0.139] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
770	chr3	24341267	24341268	rs2361016	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	14,693 European ancestry individuals	NA	3p24.2		rs2361016-?	0.6808	9E-7		0.1096	[0.066-0.153] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
770	chr3	24341271	24341272	rs377257008	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3p24.2	THRB	rs377257008-A	0.680456	4E-13		0.017148	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24341271	24341272	rs377257008	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3p24.2	NR	rs377257008-A	0.259489	3E-33		0.060875	[0.051-0.071] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
770	chr3	24343329	24343330	rs1505307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p24.2		rs1505307-C	NR	3E-57		0.0294	[0.026-0.033] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
770	chr3	24343329	24343330	rs1505307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3p24.2		rs1505307-C	0.748427	9E-46		0.0593892	[0.051-0.068] unit increase	Illumina [13476266] (imputed)	N
770	chr3	24343329	24343330	rs1505307	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3p24.2		rs1505307-C	0.748578	4E-39		0.0552846	[0.047-0.064] unit increase	Illumina [13476299] (imputed)	N
770	chr3	24343329	24343330	rs1505307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p24.2	THRB	rs1505307-C	0.650721	2E-28		0.025937125	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24343329	24343330	rs1505307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p24.2	THRB	rs1505307-C	0.650673	3E-22		0.022512188	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr3	24343329	24343330	rs1505307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs1505307-T	0.353575	9E-24				Affymetrix, Illumina [22063850] (imputed)	N
770	chr3	24343329	24343330	rs1505307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p24.2	NR	rs1505307-T	0.350061	8E-27		0.021112	[0.017-0.025] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
770	chr3	24343329	24343330	rs1505307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3p24.2	NR	rs1505307-T	0.249562	3E-38		0.062543	[0.053-0.072] SD units decrease	Affymetrix, Illumina [16286195] (imputed)	N
770	chr3	24343329	24343330	rs1505307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p24.2		rs1505307-?	NR	4E-18				NR [~ 8900000] (imputed)	N
770	chr3	24343329	24343330	rs1505307	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	3p24.2	THRB	rs1505307-?	NR	2E-11		0.03347	[0.024-0.043] unit decrease novel	Illumina [6108953] (imputed)	N
770	chr3	24343329	24343330	rs1505307	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3p24.2	THRB	rs1505307-?	NR	8E-31		0.05772	[0.048-0.068] unit increase novel	Illumina [6108953] (imputed)	N
770	chr3	24343329	24343330	rs1505307	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3p24.2	THRB	rs1505307-?	NR	5E-23		0.04941	[0.04-0.059] unit increase novel	Illumina [6108953] (imputed)	N
770	chr3	24343329	24343330	rs1505307	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.2	THRB	rs1505307-T	NR	1E-8	(Asian)	0.0039	[0.0025-0.0053] unit decrease	NR [2500000] (imputed)	N
770	chr3	24343329	24343330	rs1505307	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.2	THRB	rs1505307-T	NR	9E-11	(Asian)	0.005	[0.0034-0.0066] unit decrease	NR [2500000] (imputed)	N
770	chr3	24343329	24343330	rs1505307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p24.2	THRB	rs1505307-C	0.6497	4E-9		0.02201832	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24343329	24343330	rs1505307	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3p24.2	THRB	rs1505307-C	0.6496	4E-14		0.02794969	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24345536	24345536	rs544728653	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p24.2		rs544728653-AT	NR	6E-13		0.0169	[0.012-0.021] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p24.2	THRB	rs869785-C	0.670695	3E-61		0.038758263	[0.034-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p24.2	THRB	rs869785-T	0.329292	9E-17		0.019545041	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.2	THRB	rs869785-C	0.670732	3E-48		0.034635097	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs869785-C	0.695955	7E-100				Affymetrix, Illumina [24332387] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p24.2	NR	rs869785-C	0.669384	1E-91		0.039805	[0.036-0.044] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs869785-C	0.687713	3E-15				Affymetrix, Illumina [23467995] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs869785-C	0.691744	1E-271				Affymetrix, Illumina [24246363] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p24.2	NR	rs869785-C	0.669379	4E-243		0.064014	[0.06-0.068] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs869785-C	0.693971	7E-235				Affymetrix, Illumina [20825802] (imputed)	N
770	chr3	24347799	24347800	rs869785	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p24.2	NR	rs869785-C	0.670336	2E-211		0.063355	[0.059-0.067] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
770	chr3	24347799	24347800	rs869785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p24.2	THRB	rs869785-C	0.6701	3E-10		0.02394214	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24348007	24348008	rs869784	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3p24.2		rs869784-C	NR	6E-10		0.1	[0.061-0.139] unit increase	Illumina [94681438]	N
770	chr3	24348007	24348008	rs869784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	3p24.2	NR	rs869784-T	0.209702	6E-15		0.035252	[0.026-0.044] SD units increase	Affymetrix, Illumina [16709798] (imputed)	N
770	chr3	24348007	24348008	rs869784	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	3p24.2	THRB	rs869784-T	NR	7E-6		4.507	NR z score increase	Illumina [7839440] (imputed)	N
770	chr3	24348007	24348008	rs869784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.2		rs869784-?	NR	1E-67				NR [~ 8900000] (imputed)	N
770	chr3	24348007	24348008	rs869784	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.2		rs869784-?	NR	9E-187				NR [~ 8900000] (imputed)	N
770	chr3	24348007	24348008	rs869784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3p24.2	THRB	rs869784-C	0.6687	1E-9		0.02252218	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
770	chr3	24350810	24350811	rs9310736	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3p24.2	NR	rs9310736-?	NR	8E-10				NR [2500000] (imputed)	N
770	chr3	24350810	24350811	rs9310736	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3p24.2	THRB	rs9310736-A	0.35	6E-16	(EA, MCV)	0.21	[0.16-0.26] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
770	chr3	24350810	24350811	rs9310736	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	3p24.2	THRB	rs9310736-A	0.26	3E-8		0.074	[0.049-0.099] unit decrease	Illumina [561583]	N
770	chr3	24350810	24350811	rs9310736	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	3p24.2	THRB	rs9310736-A	0.26	4E-10		0.084	[0.059-0.109] unit decrease	Illumina [561583]	N
770	chr3	24357242	24357243	rs7640580	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3p24.2		rs7640580-A	NR	3E-11		0.0142	[0.01-0.018] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
770	chr3	24364509	24364510	rs4858605	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p24.2	THRB	rs4858605-T	0.1848	5E-11		0.0158	[0.011-0.021] unit increase	Affymetrix [18391927] (imputed)	N
771	chr3	24385332	24385333	rs62255383	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p24.2	THRB	rs62255383-T	0.2364	7E-6		0.0337	[0.019-0.048] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
771	chr3	24387021	24387022	rs35601156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.2		rs35601156-?	NR	2E-10				NR [~ 8900000] (imputed)	N
771	chr3	24389618	24389619	rs9809320	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.2	NR1D2	rs9809320-?	NR	4E-6	(fructose; glucose; galactose)	0.22787093	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
771	chr3	24404958	24404959	rs62255389	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p24.2		rs62255389-?	NR	6E-9				NR [~ 8900000] (imputed)	N
771	chr3	24416893	24416895	rs145425144	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	3p24.2	NR	rs145425144-?	NR	7E-6		0.1072	[0.061-0.154] unit decrease	Illumina [at least 560000] (imputed)	N
771	chr3	24454970	24454971	rs76589483	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p24.2	THRB	rs76589483-A	0.0427768741580907	1E-6	(F_Sutterellaceae_RNT)	0.26884	[0.16-0.38] unit decrease	Illumina [7711310] (imputed)	N
771	chr3	24463234	24463235	rs73041705	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p24.2		rs73041705-C	NR	2E-8		0.0576	[0.037-0.078] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
771	chr3	24463234	24463235	rs73041705	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p24.2	THRB	rs73041705-T	0.702	2E-9		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
771	chr3	24464954	24464955	rs59212267	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3p24.2	THRB	rs59212267-G	0.7027	4E-27		0.7813	[0.64-0.92] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
771	chr3	24465079	24465080	rs60325252	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p24.2	THRB	rs60325252-C	0.71	9E-27		0.75	[0.61-0.89] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
771	chr3	24467201	24467202	rs2217884	31407531	Do AN	2019-08-13	Mol Genet Genomic Med	Genome-wide meta-analysis of SNP and antihypertensive medication interactions on left ventricular traits in African Americans.	Relative wall thickness x antihypertensive treatment interaction	up to 2,068 African American individuals	up to 613 European ancestry individuals	3p24.2	THRB	rs2217884-?	NR	1E-7	(dCCB versus ACE, AA)	0.09	[0.057-0.123] unit increase	Affymetrix, Illumina [up to 2191661] (imputed)	N
771	chr3	24472865	24472866	rs73032363	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p24.2	THRB	rs73032363-A	0.7	4E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	9E-10	(200 ms)	0.0348672	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	8E-9	(214 ms)	0.0327042	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	8E-9	(196 ms)	0.0334341	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	6E-9	(212 ms)	0.0332005	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	6E-9	(194 ms)	0.0338155	[0.022-0.046] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	5E-9	(210 ms)	0.0331959	[0.021-0.045] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	4E-8	(308 ms)	0.03247	[0.02-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	4E-10	(178 ms)	0.0362704	[0.024-0.048] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	2E-9	(198 ms)	0.0346195	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	2E-8	(220 ms)	0.0317621	[0.02-0.044] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	2E-8	(218 ms)	0.0315721	[0.02-0.044] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24475505	24475505	rs760390566	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.2	THRB	rs760390566-CT	0.707417	1E-9	(180 ms)	0.0352929	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
771	chr3	24482317	24482318	rs13077437	27005419	Borne Y	2016-03-22	Hum Mol Genet	Genome wide association study identifies two loci associated with cadmium in erythrocytes among never-smokers.	Erythrocyte cadmium concentration	2,704 ever-smoker individuals, 1,728 never-smoker individuals	NA	3p24.2	THRB	rs13077437-A	0.3182	7E-6		0.08473	[NR] unit decrease	Illumina [658884]	N
771	chr3	24490425	24490426	rs11712061	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.2	THRB	rs11712061-C	0.428424	6E-13		0.013671	[0.0099-0.0174] unit decrease	NR [13737936] (imputed)	N
771	chr3	24491743	24491744	rs2043581	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.2		rs2043581-?	NR	2E-9				NR [~ 8900000] (imputed)	N
771	chr3	24491743	24491744	rs2043581	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.2		rs2043581-?	NR	4E-10		0.0135843	[0.0094-0.0178] unit decrease	Affymetrix [20259828] (imputed)	N
771	chr3	24506838	24506839	rs76247835	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	3p24.2	THRB	rs76247835-C	0.004	4E-7		13.48	[4.90-37.06]	Illumina [7959153] (imputed)	N
772	chr3	24520282	24520283	rs6792725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	3p24.2		rs6792725-A	0.306895	2E-8		0.0250476	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
772	chr3	24520282	24520283	rs6792725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p24.2		rs6792725-G	NR	1E-12		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
772	chr3	24520282	24520283	rs6792725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p24.2		rs6792725-G	NR	8E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
772	chr3	24520282	24520283	rs6792725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p24.2		rs6792725-G	NR	2E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
772	chr3	24520282	24520283	rs6792725	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3p24.2		rs6792725-G	NR	6E-11		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
772	chr3	24520282	24520283	rs6792725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p24.2	NR	rs6792725-G	NR	4E-10		0.0168	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr3	24520282	24520283	rs6792725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p24.2	NR	rs6792725-G	NR	2E-9		0.0168	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr3	24520282	24520283	rs6792725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	3p24.2	NR	rs6792725-G	NR	5E-13		0.0195	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p24.2	THRB	rs6792725-A	0.307593	4E-12		0.0154612	[0.011-0.02] unit increase	Affymetrix [NR] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3p24.2	THRB	rs6792725-?	NR	1E-9		0.0178	[0.013-0.023] unit increase	Affymetrix [5701386] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p24.2	NR	rs6792725-G	0.693703	3E-9		0.0189371	[0.012-0.026] unit increase	Affymetrix [16577313] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p24.2	NR	rs6792725-G	0.692987	1E-63		0.0148285	[0.013-0.017] unit increase	Affymetrix [16582909] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p24.2	NR	rs6792725-G	0.692002	5E-43		0.0176503	[0.015-0.02] unit increase	Affymetrix [16585854] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3p24.2	NR	rs6792725-G	0.694028	4E-26		0.0125964	[0.01-0.015] unit increase	Affymetrix [16582621] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p24.2	NR	rs6792725-G	0.692987	2E-46		0.0141084	[0.012-0.016] unit increase	Affymetrix [16582965] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p24.2	NR	rs6792725-G	0.692002	4E-29		0.0168669	[0.014-0.02] unit increase	Affymetrix [16585866] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3p24.2	NR	rs6792725-G	0.694028	2E-21		0.0120526	[0.0094-0.0147] unit increase	Affymetrix [16582614] (imputed)	N
772	chr3	24520282	24520283	rs6792725	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p24.2	NR	rs6792725-A	0.308073	5E-10		0.0172911	[0.012-0.023] unit increase	Affymetrix [16585745] (imputed)	N
772	chr3	24520282	24520283	rs6792725	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p24.2	NR	rs6792725-A	0.306899	1E-13		0.0171704	[0.013-0.022] unit increase	NR [NR]	N
772	chr3	24520282	24520283	rs6792725	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p24.2		rs6792725-A	NR	7E-6		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
772	chr3	24520282	24520283	rs6792725	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p24.2	NR	rs6792725-A	NR	4E-8		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
772	chr3	24527580	24527581	rs57751578	34062886	Nazarian A	2021-05-01	Genes (Basel)	Genome-Wide Analysis of Sex Disparities in the Genetic Architecture of Lung and Colorectal Cancers.	Colorectal cancer	211 European ancestry female cases, 186 European ancestry male cases, 8,382 European ancestry female controls, 6,312 European ancestry male controls	NA	3p24.2	THRB	rs57751578-T	0.911	2E-6	(Male)	0.483	[0.36-0.61]	NR [up to 1668415] (imputed)	N
772	chr3	24538266	24538267	rs3749376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.2	THRB-AS1, RP11-317L10.1	rs3749376-T	0.111904	1E-9		0.0222424	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
772	chr3	24538266	24538267	rs3749376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.2	THRB-AS1, RP11-317L10.1	rs3749376-T	0.111894	6E-10		0.021796426	[0.015-0.029] unit increase	Affymetrix [93095623] (imputed)	N
772	chr3	24538266	24538267	rs3749376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.2		rs3749376-?	NR	1E-8				NR [~ 8900000] (imputed)	N
772	chr3	24546135	24546136	rs2077217	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	3p24.2	NR	rs2077217-?	NR	2E-6		0.1495	[0.089-0.21] unit increase	Illumina [~ 7800000] (imputed)	N
772	chr3	24547816	24547817	rs2060529	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p24.2		rs2060529-?	NR	4E-13				Illumina [1128286]	N
772	chr3	24554703	24554704	rs10490840	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p24.2	Intergenic	rs10490840-A	0.4751	4E-8	(MTAG)	0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
772	chr3	24623321	24623322	rs6794846	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p24.2		rs6794846-?	NR	4E-8				NR [~ 8900000] (imputed)	N
773	chr3	24647527	24647528	rs17014925	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p24.2	intergenic	rs17014925-?	NR	7E-6		0.0621	[0.035-0.089] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
773	chr3	24649542	24649543	rs747312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p24.2	NR	rs747312-C	NR	1E-9		0.0147	[0.01-0.0194] unit increase	Affymetrix [9000000] (imputed)	N
773	chr3	24673157	24673158	rs114456303	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p24.2	MIR4792	rs114456303-C	0.980317	1E-8		0.0440546	[0.029-0.059] unit decrease	NR [16516521] (imputed)	N
773	chr3	24711012	24711013	rs6770162	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3p24.2	THRB	rs6770162-A	0.51	2E-12		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
773	chr3	24715134	24715135	rs1984870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p24.2		rs1984870-?	NR	2E-15				NR [~ 8900000] (imputed)	N
773	chr3	24765404	24765405	rs73048344	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 15)	3,566 European ancestry individuals	4,680 European ancestry individuals	3p24.2		rs73048344-G	0.129931389	3E-8				Illumina [7417619] (imputed)	N
773	chr3	24768864	24768865	rs74574927	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	3p24.2	RARB	rs74574927-?		2E-6		16.13	[11.72-20.54] unit increase	Illumina [~ 4900000] (imputed)	N
774	chr3	24773282	24773283	rs4608636	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3p24.2	NR	rs4608636-?	NR	3E-6		4.32	[3.36-5.54]	Illumina [539000] (imputed)	N
774	chr3	24790931	24790932	rs75516811	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.2	NR	rs75516811-T	0.04007	5E-9	(DPP7)	0.09071	NR unit increase	Illumina [1671387] (imputed)	N
774	chr3	24793810	24793811	rs4241533	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p24.2	NR	rs4241533-?		8E-6				Illumina [4322238] (imputed)	N
774	chr3	24821054	24821055	rs78777602	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	3p24.2	RARB	rs78777602-?		1E-6		9.482	[6.66-12.3] unit increase	Illumina [~ 4900000] (imputed)	N
775	chr3	24905459	24905460	rs112512729	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p24.2	RARB	rs112512729-T	0.9114	4E-8		0.0965	[0.062-0.131] unit decrease	NR [9744772] (imputed)	N
775	chr3	24905459	24905460	rs112512729	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.2		rs112512729-T	0.9282	1E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
775	chr3	24924420	24924421	rs2362775	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p24.2	THRB, RARB	rs2362775-C	0.4658	6E-9		1.0220394		Affymetrix [11880941] (imputed)	N
775	chr3	24925069	24925070	rs115463265	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Midgestational cytokine/chemokine levels (maternal genetic effect)	790 Hispanic, European, Asian, South Asian or African American individuals	NA	3p24.2	THRB, RARB	rs115463265-T	0.02	2E-9	(CCL11)	1.5	[1.03-1.97] unit decrease	Affymetrix [629686]	N
775	chr3	24935789	24935790	rs13059636	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p24.2	THRB, RARB	rs13059636-A	0.5356	6E-9		0.00987093	[0.0065-0.0132] unit decrease	Affymetrix [11880941] (imputed)	N
775	chr3	24935789	24935790	rs13059636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p24.2		rs13059636-?	NR	4E-12				NR [~ 8900000] (imputed)	N
775	chr3	24950386	24950387	rs13085461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.2	Intergenic	rs13085461-C	0.478	1E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
775	chr3	24950386	24950387	rs13085461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.2		rs13085461-C	0.474	2E-13		0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
775	chr3	24950386	24950387	rs13085461	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.2	Intergenic	rs13085461-C	0.474	1E-13	(MTAG)	0.0098	[0.0073-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
775	chr3	24963066	24963067	rs9846880	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p24.2		rs9846880-G	0.43	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
775	chr3	24964349	24964350	rs6782972	29608257	Painter JN	2018-04-02	Cancer Med	Genetic overlap between endometriosis and endometrial cancer: evidence from cross-disease genetic correlation and GWAS meta-analyses.	Endometriosis or endometrial cancer (pleiotropy)	3,194 endometriosis cases, 5,330 non-endometriosis controls, 2,057 endometrial cancer cases, 3,866 non-endometrial cancer controls	NA	3p24.2	NR	rs6782972-G	NR	3E-9		1.2048193	[1.15-1.26]	Illumina [462430]	N
776	chr3	25043828	25043829	rs12487626	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p24.2	RARB	rs12487626-?	NR	7E-9		0.439	[0.29-0.59] unit decrease	Affymetrix [11100000] (imputed)	N
776	chr3	25047445	25047446	rs4858678	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p24.2	RARB	rs4858678-A	0.72	1E-15		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
776	chr3	25049095	25049096	rs9853280	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p24.2		rs9853280-A	0.558	9E-6		0.029902	[0.017-0.043] unit decrease	Affymetrix [15580782] (imputed)	N
776	chr3	25049309	25049310	rs11129176	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic nerve head parameters (multi-trait analysis)	up to 25,180 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	3p24.2	RARB	rs11129176-A	0.29	4E-8	(EA)			Affymetrix, Illumina [up to 11901698] (imputed)	N
776	chr3	25049309	25049310	rs11129176	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	3p24.2	RARB	rs11129176-A	0.29	9E-6		0.0191	NR mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
776	chr3	25049309	25049310	rs11129176	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3p24.2	RARB	rs11129176-A		2E-7	(EA)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
776	chr3	25049309	25049310	rs11129176	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3p24.2	RARB	rs11129176-A		1E-8		0.023	[0.015-0.031] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
776	chr3	25049309	25049310	rs11129176	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	3p24.2	RARB	rs11129176-A	0.29	3E-7	(EA)	0.028	[0.018-0.038] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
776	chr3	25049309	25049310	rs11129176	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	3p24.2	RARB	rs11129176-A	0.29	2E-8		0.026	[0.016-0.036] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
776	chr3	25053042	25053043	rs4482636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p24.2	NR	rs4482636-T	0.653136	5E-11		0.012709	[0.0089-0.0165] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
776	chr3	25053481	25053482	rs4280597	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p24.2	AC133680.1	rs4280597-A	0.651507	2E-9		0.013857324	[0.0093-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
776	chr3	25066224	25066225	rs4858682	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3p24.2	MIR4792, RARB	rs4858682-C	0.47	7E-10		0.0053	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
776	chr3	25066224	25066225	rs4858682	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3p24.2	RARB	rs4858682-C	0.47	4E-9		0.00526	[0.0035-0.007] unit decrease	Affymetrix [at least 8002429] (imputed)	N
776	chr3	25079849	25079850	rs547923003	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	3p24.2	AC133680.1	rs547923003-C	0.004353	1E-6		28.59	[9.28-88.29]	Affymetrix [7675561] (imputed)	N
776	chr3	25079877	25079877	rs10628337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p24.2		rs10628337-CTT	NR	9E-14		0.0145	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
776	chr3	25090476	25090477	rs35779991	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	3p24.2	intergenic	rs35779991-?	NR	4E-13		0.017924	[0.013-0.023] unit decrease	Affymetrix [25921788] (imputed)	N
776	chr3	25095910	25095911	rs1609783	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3p24.2	RARB	rs1609783-A	0.5364	3E-13		0.0052	[0.0038-0.0066] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
776	chr3	25099775	25099776	rs10510554	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative carbohydrate intake	175,253 European ancestry individuals	93,179 European ancestry individuals	3p24.2	AC133680.1	rs10510554-?		2E-12		0.019	[0.013-0.025] unit increase	Affymetrix [NR]	N
776	chr3	25099775	25099776	rs10510554	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p24.2	intergenic	rs10510554-?	NR	8E-11		0.0159892	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p24.2	MIR4792, RARB	rs10510554-C	0.56	3E-12		0.016	[0.012-0.02] unit increase	Illumina [6108953] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-C	0.5498000000000001	5E-7		0.037	[0.023-0.051] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-C	0.5714	4E-6	(EA)	0.0192	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-C	0.5608	2E-6		0.0193	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-?	NR	2E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-C	0.5714	2E-9	(EA)	0.0228	[0.015-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs10510554-C	0.5608	6E-11		0.0233	[0.016-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25099775	25099776	rs10510554	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p24.2	NR	rs10510554-T	0.423951113491922	8E-11		0.017831419	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr3	25105287	25105288	rs12715065	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative protein intake	175,253 European ancestry individuals	93,179 European ancestry individuals	3p24.2	NR	rs12715065-?		5E-10		0.018	[0.012-0.024] unit increase	Affymetrix [NR]	N
776	chr3	25106436	25106437	rs6804842	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p24.2	NA	rs6804842-A	0.4301	8E-18		0.0141	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p24.2	NA	rs6804842-A	0.4301	8E-18		0.0141	[0.011-0.017] unit decrease	NR [~ 27400000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p24.2	NR	rs6804842-A	NR	6E-12		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3p24.2	LOC100129045, RARB	rs6804842-G	0.579	6E-6	(EA)	0.0363	[0.021-0.052] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs6804842-?	NR	1E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs6804842-G	0.5751	3E-9	(EA, men)	0.0333	[0.022-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p24.2	RARB	rs6804842-A	0.4416	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3p24.2	RARB	rs6804842-A	0.4416	9E-6		0.0303	[0.017-0.044] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p24.2	RARB	rs6804842-A	0.4416	1E-7		0.0173	[0.011-0.024] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
776	chr3	25106436	25106437	rs6804842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p24.2	RARB	rs6804842-G	0.575	2E-9	(EA)	0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr3	25106436	25106437	rs6804842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p24.2	RARB	rs6804842-G	0.572	8E-7	(EA, men)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr3	25106436	25106437	rs6804842	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p24.2	RARB	rs6804842-G	0.569	8E-10		0.018	[0.012-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
776	chr3	25110414	25110415	rs7619139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p24.2		rs7619139-A	NR	1E-23		0.0167	[0.013-0.02] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
776	chr3	25110414	25110415	rs7619139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p24.2		rs7619139-A	0.602501	3E-10		0.0174922	[0.012-0.023] unit increase	Illumina [13479924] (imputed)	N
776	chr3	25110414	25110415	rs7619139	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p24.2		rs7619139-A	NR	5E-25		0.0199	[0.016-0.024] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
776	chr3	25110414	25110415	rs7619139	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary sodium excretion	332,397 European ancestry individuals, 5,781 African ancestry individuals, 6,993 South Asian ancestry individuals	NA	3p24.2	NR	rs7619139-A	NR	1E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	32393786	Meddens SFW	2020-05-11	Mol Psychiatry	Genomic analysis of diet composition finds novel loci and associations with health and lifestyle.	Relative sugar intake	175,253 European ancestry individuals	59,454 European ancestry individuals	3p24.2	AC092422.1	rs7619139-?		4E-16		0.024	[0.018-0.03] unit decrease	Affymetrix [NR]	N
776	chr3	25110414	25110415	rs7619139	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p24.2	RARB	rs7619139-T	0.411293	7E-12		0.00979985	[0.007-0.0126] unit decrease	Affymetrix [12370749]	N
776	chr3	25110414	25110415	rs7619139	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p24.2	RARB	rs7619139-T	0.411293	2E-10		0.00884007	[0.0061-0.0116] unit decrease	Affymetrix [12370749]	N
776	chr3	25110414	25110415	rs7619139	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p24.2	NR	rs7619139-?	NR	9E-14				Affymetrix [~ 8270000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	3p24.2	TMEM161B-AS1	rs7619139-T	0.41119	1E-10	(EA)	0.00815329	[0.0057-0.0106] unit decrease	Affymetrix [~ 8800000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p24.2		rs7619139-?	NR	3E-14				NR [~ 8900000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	29988085	Merino J	2018-07-09	Mol Psychiatry	Genome-wide meta-analysis of macronutrient intake of 91,114 European ancestry participants from the cohorts for heart and aging research in genomic epidemiology consortium.	Dietary macronutrient intake	91,114 European ancestry individuals	177,315 European ancestry individuals	3p24.2	RARB	rs7619139-T	0.41	6E-20	(Carbohydrate)	0.159	[0.13-0.19] % increase	Affymetrix, Illumina [1180000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p24.2	LOC100129045, RARB	rs7619139-A	0.5881	6E-7	(EA, men)	0.0438	[0.027-0.061] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25110414	25110415	rs7619139	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs7619139-?	NR	3E-8	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25112170	25112171	rs993804	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p24.2	NR	rs993804-?	NR	1E-6		1.2846	[NR]	Affymetrix [722112]	N
776	chr3	25114477	25114478	rs112366692	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p24.2		rs112366692-?	NR	4E-10				Illumina [1128286]	N
776	chr3	25114477	25114478	rs112366692	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Cooked vegetable consumption	335,576 European ancestry individuals	NA	3p24.2	intergenic	rs112366692-?	NR	3E-8		0.0204918	[0.013-0.028] unit increase	Affymetrix [25921788] (imputed)	N
776	chr3	25116581	25116582	rs4858697	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p24.2	AC092422.1	rs4858697-A	0.4184	3E-14		0.0145	[0.011-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
776	chr3	25116581	25116582	rs4858697	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p24.2	LOC100129045, RARB	rs4858697-G	0.5730999999999999	1E-6	(men)	0.0339	[0.02-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25116581	25116582	rs4858697	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs4858697-?	NR	4E-9	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25116581	25116582	rs4858697	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p24.2	LOC100129045, RARB	rs4858697-G	0.5791	1E-9	(men)	0.037	[0.025-0.049] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
776	chr3	25118636	25118637	rs7429279	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	3p24.2	RARB	rs7429279-A	0.41	1E-9		0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
776	chr3	25118636	25118637	rs7429279	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	3p24.2	RARB	rs7429279-A	0.41	5E-10		0.035	[0.024-0.046] unit increase	Affymetrix [at least 8900000] (imputed)	N
776	chr3	25125529	25125530	rs12486699	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	3p24.2	RARB	rs12486699-?	NR	5E-8		0.00732334	[0.0047-0.01] unit decrease	Affymetrix [NR] (imputed)	N
776	chr3	25154111	25154112	rs4858708	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p24.2	NR	rs4858708-T	0.4695	1E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
776	chr3	25154111	25154112	rs4858708	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p24.2	RARB	rs4858708-A	0.5161	4E-8		0.010681061	[0.0069-0.0145] unit decrease	Illumina [9339358] (imputed)	N
776	chr3	25155623	25155624	rs1909527	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p24.2	RARB	rs1909527-A	0.478	6E-11		0.0077	[0.0053-0.0101] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
777	chr3	25174062	25174063	rs7643392	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p24.2		rs7643392-?	NR	9E-9				NR [~ 8900000] (imputed)	N
777	chr3	25179532	25179533	rs73048404	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p24.2	RARB	rs73048404-T	0.8529	2E-10		0.0209	[0.014-0.027] unit increase	Affymetrix [19819130] (imputed)	N
777	chr3	25179532	25179533	rs73048404	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p24.2	RARB	rs73048404-T	0.8529	2E-8		0.0183	[0.012-0.025] unit increase	Affymetrix [19819130] (imputed)	N
777	chr3	25181029	25181030	rs9840225	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p24.2	NR	rs9840225-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
777	chr3	25181562	25181563	rs4426644	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.2	NR	rs4426644-C	0.473	2E-8		0.00613536	[0.004-0.0083] unit increase	NR [9732723] (imputed)	N
777	chr3	25184955	25184956	rs1603981	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p24.2		rs1603981-A	0.1828	1E-6		33.11184	z score increase	NR [6814003]	N
777	chr3	25193101	25193102	rs904592	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p24.2		rs904592-C	0.514	2E-10		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
777	chr3	25193101	25193102	rs904592	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p24.2	RARB	rs904592-T	0.482	4E-8		0.0126	[0.0081-0.0171] unit increase	Illumina [~ 250000] (imputed)	N
777	chr3	25209800	25209801	rs7645872	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p24.2	RARB	rs7645872-T	0.4827	3E-8		0.012088328	[0.0078-0.0163] unit increase	Affymetrix [11514654] (imputed)	N
777	chr3	25225162	25225163	rs11711099	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3p24.2	NR	rs11711099-C	0.4839	2E-8		1.029	[1.02-1.04]	NR [8968716] (imputed)	N
777	chr3	25256995	25256996	rs34296249	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.2		rs34296249-?	NR	4E-11				NR [~ 8900000] (imputed)	N
777	chr3	25269024	25269025	rs144217733	31206233	Real LM	2019-06-17	Liver Int	A genome-wide association study in low susceptibility to hepatitis C virus infection (GEHEP012 Study).	Low susceptibility to hepatitis C infection	27 Spanish ancestry uninfected high-risk individuals, 804 Spanish ancestry infected individuals	NA	3p24.2	RARB	rs144217733-C	0.003731	7E-7		33.38	[10.39-107.3]	Affymetrix [7675561] (imputed)	N
777	chr3	25292965	25292966	rs6778300	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA	3p24.2	NR	rs6778300-C	0.0119647	5E-6				Illumina [5378266] (imputed)	N
778	chr3	25320732	25320733	rs1825370	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	3p24.2	Intergenic	rs1825370-?	NR	1E-6		1.22	[1.13-1.32]	Affymetrix, Illumina [39235000] (imputed)	N
778	chr3	25336239	25336240	rs1656878	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p24.2		rs1656878-C	NR	6E-9		0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
778	chr3	25337482	25337483	rs977226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p24.2		rs977226-T	NR	1E-8		0.0168	[0.011-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
778	chr3	25343614	25343615	rs322668	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p24.2	NR	rs322668-G	0.285734488487585	4E-6	(IGP19)	0.159	[0.092-0.226] unit decrease	Illumina [~ 2500000] (imputed)	N
778	chr3	25348619	25348620	rs322692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.2	NR	rs322692-A	0.320666	9E-15				Affymetrix, Illumina [19872809] (imputed)	N
778	chr3	25348619	25348620	rs322692	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p24.2	NR	rs322692-A	0.345083	1E-14		0.016125	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
778	chr3	25354512	25354513	rs322699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p24.2	RARB	rs322699-T	NR	4E-8		0.0169278	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
778	chr3	25356872	25356873	rs322662	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	3p24.2	RARB	rs322662-A	0.107	4E-6		0.00288	[0.0017-0.0041] unit increase	Affymetrix [1219546] (imputed)	N
778	chr3	25363080	25363081	rs11711833	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3p24.2	RARB	rs11711833-A	0.473	7E-6	(African)			Illumina [4404269] (imputed)	N
778	chr3	25363162	25363163	rs11711864	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p24.2	NR	rs11711864-A	0.444567	1E-9		0.0122741	[0.0083-0.0162] unit increase	NR [NR]	N
778	chr3	25363942	25363943	rs9822411	26184070	Aebi M	2015-07-16	Am J Med Genet B Neuropsychiatr Genet	Gene-set and multivariate genome-wide association analysis of oppositional defiant behavior subtypes in attention-deficit/hyperactivity disorder.	Oppositional defiant disorder dimensions in attention-deficit hyperactivity disorder	750 European ancestry child and adolescent cases	NA	3p24.2	RARB	rs9822411-?	NR	5E-6	(multivariate)			Perlegen [1871025] (imputed)	N
778	chr3	25370971	25370972	rs146881812	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	3p24.2	RARB	rs146881812-G	0.0021	2E-6		4.93721	NR	Affymetrix, Illumina [30341632] (imputed)	N
778	chr3	25381635	25381636	rs9861454	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p24.2		rs9861454-?	NR	2E-11				NR [~ 8900000] (imputed)	N
778	chr3	25381955	25381956	rs10510562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p24.2		rs10510562-?	NR	1E-9				NR [~ 8900000] (imputed)	N
778	chr3	25383586	25383587	rs6550965	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3p24.2		rs6550965-A	NR	1E-14		0.151734	[0.11-0.19] unit increase	NR [2787054] (imputed)	N
778	chr3	25383586	25383587	rs6550965	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	3p24.2		rs6550965-A	NR	4E-14		0.163094	[0.12-0.21] unit increase	NR [5054572] (imputed)	N
778	chr3	25388568	25388569	rs6787363	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p24.2	RARB	rs6787363-A	0.38	2E-31		0.02	unit increase	Affymetrix [8928767] (imputed)	N
778	chr3	25393836	25393837	rs13073683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p24.2	RNA5SP126	rs13073683-C	0.398869	8E-12		0.015424185	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
778	chr3	25393836	25393837	rs13073683	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p24.2	RNA5SP126	rs13073683-C	0.398876	1E-12		0.015959898	[0.012-0.02] unit increase	Affymetrix [93095623] (imputed)	N
778	chr3	25393859	25393860	rs11712065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.2		rs11712065-?	NR	4E-16				NR [~ 8900000] (imputed)	N
778	chr3	25396312	25396313	rs4681049	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p24.2		rs4681049-T	NR	1E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
778	chr3	25398609	25398610	rs7637258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p24.2		rs7637258-T	NR	1E-11		0.0098	[0.0071-0.0125] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
778	chr3	25404135	25404136	rs13325064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3p24.2	NR	rs13325064-G	NR	5E-13		0.018	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr3	25411022	25411023	rs9836368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p24.2	RARB	rs9836368-T	0.780993	8E-10		0.016343385	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
778	chr3	25414587	25414588	rs13070614	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p24.2	RARB	rs13070614-C	0.78	2E-22		0.02	unit increase	Affymetrix [8928767] (imputed)	N
778	chr3	25424928	25424929	rs2306623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p24.2		rs2306623-C	NR	6E-14		0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
779	chr3	25430068	25430069	rs7653107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p24.2		rs7653107-T	NR	3E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
779	chr3	25437647	25437648	rs62237590	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls		RARB	rs62237590-C	NR	5E-7		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
779	chr3	25448878	25448879	rs140263003	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	3p24.2	NR	rs140263003-?	NR	7E-7		0.2051	[0.12-0.29] unit increase	Illumina [at least 560000] (imputed)	N
779	chr3	25449003	25449004	rs116819086	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	3p24.2		rs116819086-?	NR	9E-7		0.24	[0.15-0.33] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
779	chr3	25449003	25449004	rs116819086	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals, 3,806 African American individuals, 774 Chinese ancestry individuals, 1,446 Hispanics ancestry individuals	NA	3p24.2		rs116819086-?	NR	9E-7		0.24	[0.15-0.33] unit decrease	Affymetrix, Illumina [10661418] (imputed)	N
779	chr3	25451460	25451461	rs2364118	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	3p24.2	intergenic	rs2364118-?	NR	2E-6		0.0099	[0.0058-0.014] m/sec decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
779	chr3	25493177	25493178	rs13070407	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	3p24.2	NR	rs13070407-?	NR	1E-6		0.004701	[0.0028-0.0066] unit increase	Affymetrix [9658292] (imputed)	N
779	chr3	25516820	25516821	rs9866679	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p24.2	RARB	rs9866679-G	0.235712	3E-8		0.0127699	[0.0082-0.0173] unit decrease	Affymetrix [NR] (imputed)	N
779	chr3	25520581	25520582	rs1529672	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	3p24.2		rs1529672-A	0.342662468	1E-9		0.14939864	[0.1-0.2] unit decrease	Illumina [13427899] (imputed)	N
779	chr3	25520581	25520582	rs1529672	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Chronic obstructive pulmonary disease	3,315 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	3p24.2		rs1529672-A	0.342219456	8E-9		0.85808474	[0.814642985-0.903843096]	Illumina [8919992] (imputed)	N
779	chr3	25520581	25520582	rs1529672	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p24.2	RARB	rs1529672-C	0.83	3E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [6224355] (imputed)	N
779	chr3	25520581	25520582	rs1529672	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3p24.2	RARB	rs1529672-A	0.1736	9E-11		0.0216	[0.015-0.028] unit increase	Affymetrix [19819130] (imputed)	N
779	chr3	25520581	25520582	rs1529672	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p24.2	RARB	rs1529672-A	0.1736	2E-41		0.0423	[0.036-0.048] unit increase	Affymetrix [19819130] (imputed)	N
779	chr3	25520581	25520582	rs1529672	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p24.2	RARB	rs1529672-A	0.1736	2E-7		0.016	[0.0099-0.0221] unit increase	Affymetrix [19819130] (imputed)	N
779	chr3	25520581	25520582	rs1529672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p24.2		rs1529672-?	NR	4E-63				NR [~ 8900000] (imputed)	N
779	chr3	25520581	25520582	rs1529672	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	3p24.2	RARB	rs1529672-C	0.83	2E-8		1.11	[1.07-1.15]	Affymetrix, Illumina [NR] (imputed)	N
779	chr3	25520581	25520582	rs1529672	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	3p24.2	RARB	rs1529672-?	NR	7E-11	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
779	chr3	25520581	25520582	rs1529672	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3p24.2	RARB	rs1529672-C	0.83	4E-14	(FEV1/FVC)	0.048	[0.036-0.060] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
779	chr3	25528375	25528376	rs1286662	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.2	RARB	rs1286662-A	0.815424	1E-20		0.0221678	[0.018-0.027] unit increase	NR [13737936] (imputed)	N
779	chr3	25528375	25528376	rs1286662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.2		rs1286662-?	NR	6E-20				NR [~ 8900000] (imputed)	N
779	chr3	25528375	25528376	rs1286662	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.2		rs1286662-?	NR	4E-17		0.0232879	[0.018-0.029] unit increase	Affymetrix [20259828] (imputed)	N
779	chr3	25529279	25529280	rs1286664	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.2	RARB	rs1286664-T	0.649	4E-6		0.01	unit increase	Illumina [NR] (imputed)	N
779	chr3	25538316	25538317	rs1997352	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3p24.2	RARB	rs1997352-?	0.74	9E-7	(All)	1.1905	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
779	chr3	25545499	25545500	rs1303630	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.2		rs1303630-?	NR	6E-8				NR [~ 8900000] (imputed)	N
779	chr3	25546309	25546310	rs112385750	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p24.2	RARB	rs112385750-A	0.085549	3E-9		0.023740875	[0.016-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
779	chr3	25546375	25546376	rs1298216	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Intestinimonas massiliensis abundance in stool	5,959 Finnish ancestry individuals	NA	3p24.2		rs1298216-A	0.358604	5E-8		0.0411852	[0.026-0.056] unit increase	Illumina [7980478] (imputed)	N
779	chr3	25548554	25548555	rs1560633	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.2		rs1560633-?	NR	7E-13		0.0160679	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
779	chr3	25548554	25548555	rs1560633	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p24.2	RARB	rs1560633-T	0.363032	4E-7	(women)	0.0245346	[0.015-0.034] unit decrease	NR [17166351] (imputed)	N
779	chr3	25548554	25548555	rs1560633	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p24.2	RARB	rs1560633-T	0.362556	7E-10		0.022117	[0.015-0.029] unit decrease	NR [17166351] (imputed)	N
780	chr3	25560230	25560231	rs1435703	19553259	Cotsapas C	2009-06-24	Hum Mol Genet	Common body mass index-associated variants confer risk of extreme obesity.	Obesity (extreme)	775 European ancestry cases, 3,197 European ancestry controls	NA	3p24.2	RARB	rs1435703-T	0.06	4E-6		1.66	[1.34-2.06]	Illumina [457251]	N
780	chr3	25569042	25569043	rs1153598	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	3p24.2	RARB	rs1153598-G	0.1348	2E-6		0.0103	[0.006-0.0146] unit increase	Affymetrix [~ 7740000] (imputed)	N
780	chr3	25574185	25574186	rs1153606	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	3p24.2	RARB	rs1153606-A	NR	3E-8		1.1	1.06-1.14	Affymetrix [at least 665500] (imputed)	N
780	chr3	25580775	25580776	rs1286772	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	3p24.2	RARB	rs1286772-?		1E-7				Illumina [479403]	N
780	chr3	25581511	25581512	rs1286771	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3p24.2	RARB	rs1286771-T	0.87	8E-8				Affymetrix, Illumina [8002429] (imputed)	N
780	chr3	25581511	25581512	rs1286771	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3p24.2	RARB	rs1286771-T	0.873	5E-9		0.112	[0.075-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
780	chr3	25581797	25581798	rs1286770	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3p24.2	RARB	rs1286770-T	NR	6E-10		0.0669	unit decrease	Illumina [15409056] (imputed)	N
780	chr3	25597498	25597498	rs35199932	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	3p24.2	NR	rs35199932-AT	0.4318	5E-7		0.6837	[0.36-1] unit increase	Illumina [at least 567677] (imputed)	N
780	chr3	25612435	25612436	rs111980473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p24.2	RARB	rs111980473-G	0.296795	2E-9		0.0138941	[0.0094-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
780	chr3	25612564	25612565	rs3773445	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	3p24.2	RARB	rs3773445-?	0.549	3E-6	(Dichotomous PC20)	1.2658228	[NR]	Illumina [546355]	N
780	chr3	25632112	25632113	rs60609026	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p24.2	RARB	rs60609026-C	0.206407	3E-9		0.016582321	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
780	chr3	25632893	25632894	rs2164360	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p24.2	NR	rs2164360-T	0.203	3E-13		0.00980264	[0.0072-0.0124] unit decrease	NR [9732723] (imputed)	N
780	chr3	25635742	25635743	rs2278480	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p24.2	RARB	rs2278480-T	0.712413	3E-8		0.0125317	[0.008-0.017] unit decrease	NR [16516521] (imputed)	N
780	chr3	25638354	25638355	rs116199914	30251476	Lopez-Mejias R	2018-09-24	Arthritis Rheumatol	A genome-wide association study identifies a 3'UTR genetic variant of RARB associated with carotid intima-media thickness in rheumatoid arthritis.	Carotid intima media thickness in rheumatoid arthritis	1,355 Spanish ancestry individuals	NA	3p24.2	RARB	rs116199914-G	0.012	2E-8		0.142	[0.093-0.191] unit increase	Illumina [63089444] (imputed)	N
780	chr3	25644971	25644972	rs6786418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p24.2		rs6786418-?	NR	3E-11				NR [~ 8900000] (imputed)	N
780	chr3	25670165	25670166	rs11712723	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p24.2	TOP2B	rs11712723-A	0.72	1E-6	(conditional on rs1529672)	1.06	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
781	chr3	25725500	25725501	rs10446419	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p24.2	NR	rs10446419-G	0.207	5E-10		0.019562634	[0.013-0.026] unit decrease	NR [~ 10000000] (imputed)	N
782	chr3	25922284	25922285	rs7644516	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (variation)	256 European ancestry individuals	384 European ancestry individuals	3p24.2	AC103588.1	rs7644516-G	0.12	4E-6	(KvDMR)			Illumina [515966]	N
782	chr3	25937906	25937907	rs11712170	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p24.2		rs11712170-?	NR	9E-10				Affymetrix [NR] (imputed)	N
783	chr3	26007867	26007868	rs2364754	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.2	NR	rs2364754-?	NR	9E-9				Illumina [7760689] (imputed)	N
784	chr3	26125783	26125784	rs571443469	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p24.2	RPEP2	rs571443469-T	0.0022	7E-6		0.8237	[0.47-1.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr3	26125783	26125784	rs571443469	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p24.2	RPEP2	rs571443469-T	0.0022	7E-6		0.8237	[0.47-1.18] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
784	chr3	26176947	26176948	rs185758311	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	3p24.2	HMGB3P12	rs185758311-T	0.0017	6E-6		0.8626	[0.49-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
785	chr3	26223734	26223735	rs2188645	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	3p24.2		rs2188645-?	NR	7E-6		0.930187	[0.9-0.96]	NR [688737]	N
785	chr3	26246574	26246575	rs7374058	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p24.2	LINC00692	rs7374058-T	NR	3E-7	(between families)	5.137	unit increase	Affymetrix [up to 15107142] (imputed)	N
786	chr3	26368499	26368500	rs78043944	33948810	Gurinovich A	2021-05-04	Geroscience	Effect of longevity genetic variants on the molecular aging rate.	Longevity (100 years and older)	1,320 European ancestry cases, 2,899 European ancestry controls	312 Ashkenazi Jewish ancestry cases, 638 Ashkenazi Jewish ancestry controls	3p24.1	LINC00692, LRRC3B	rs78043944-A	0.0065	4E-9	(EA)	5.8755207	[NR] unit increase	Illumina [9039731] (imputed)	N
786	chr3	26397293	26397294	rs4973780	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Sub-cortical grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p24.1	NR	rs4973780-?		6E-6				Illumina [4322238] (imputed)	N
786	chr3	26420134	26420135	rs116248825	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	3p24.1	NR	rs116248825-A	0.04	3E-6		4.68	[NR] z score decrease	Illumina [9009554] (imputed)	N
787	chr3	26543419	26543420	rs2202157	24057671	Chimusa ER	2013-09-18	Hum Mol Genet	Genome-wide association study of ancestry-specific TB risk in the South African Coloured population.	Tuberculosis	642 South African coloured cases, 91 South African coloured controls	NA	3p24.1	intergenic	rs2202157-T	0.84	8E-7		4.0	[NR]	Affymetrix [up to 4467279] (imputed)	N
787	chr3	26548946	26548947	rs149927798	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	3p24.1	NR	rs149927798-?	0.02	2E-7		3.98	[2.36-6.71]	Affymetrix, Illumina [~ 6000000] (imputed)	N
787	chr3	26565682	26565683	rs35524753	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p24.1	NR	rs35524753-?		4E-6				Illumina [~ 5140000] (imputed)	N
787	chr3	26568075	26568076	rs10510578	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p24.1	NR	rs10510578-?		3E-6				Illumina [~ 5140000] (imputed)	N
787	chr3	26576783	26576784	rs13072945	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p24.1	NR	rs13072945-?		3E-6				Illumina [~ 5140000] (imputed)	N
787	chr3	26579177	26579178	rs62249990	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p24.1	NR	rs62249990-?		3E-6				Illumina [~ 5140000] (imputed)	N
787	chr3	26589419	26589420	rs13076411	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p24.1	NR	rs13076411-?		3E-6				Illumina [~ 5140000] (imputed)	N
788	chr3	26721307	26721308	rs373246097	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	3p24.1	LRRC3B	rs373246097-T	0.0143	8E-6		0.1859	[0.1-0.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
789	chr3	26753102	26753103	rs4246664	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p24.1	LRRC3B	rs4246664-G	NR	3E-6		3.3646677	[2.03-4.7] unit decrease	Illumina [> 6200000] (imputed)	N
789	chr3	26829373	26829374	rs185335029	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3p24.1		rs185335029-?	NR	8E-6	(overall)	1.18		Illumina [11595112] (imputed)	N
789	chr3	26845522	26845523	rs9836823	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	4,284 Japanese ancestry female cases, 98,503 Japanese ancestry female controls	NA	3p24.1		rs9836823-G	0.273759927	5E-9		0.86310494	[0.821504381-0.906812182]	Illumina [8919992] (imputed)	N
790	chr3	26910494	26910495	rs13059218	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	3p24.1	intergenic	rs13059218-?	NR	5E-7		0.62	unit increase	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
791	chr3	27024451	27024452	rs2166811	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3p24.1	NEK10	rs2166811-G	NR	4E-8	(GO:0016706|MF|04|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors)	5.5117273	NR Z-score decrease	Illumina [8100000] (imputed)	N
791	chr3	27040450	27040451	rs67605425	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.1	intergenic	rs67605425-A	0.3838	4E-9		0.2231	[0.15-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
791	chr3	27056850	27056851	rs1402989	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p24.1	NEK10	rs1402989-C	0.514974	3E-8		0.00779167	[0.005-0.0105] unit decrease	Affymetrix [12370749]	N
791	chr3	27076709	27076710	rs939834	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (carotid-femoral pulse wave velocity)	6,430 European ancestry individuals	NA	3p24.1	NEK10, MINOS1P3, RNU6-342P	rs939834-T	0.04	2E-8		0.058	[0.038-0.078] unit increase	Affymetrix [11342744] (imputed)	N
792	chr3	27165173	27165174	rs1522151	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	3p24.1		rs1522151-?	NR	1E-9		0.916751	[0.89-0.94]	NR [682398]	N
792	chr3	27186601	27186602	rs1357245	19330027	Ahmed S	2009-05-01	Nat Genet	Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	11,645 European ancestry cases, 12,015 European ancestry controls	3p24.1	SLC4A7, NEK10	rs1357245-G	0.54	2E-7		1.06	NR	Perlegen [up to 206586]	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	7E-10	(-492 ms)	0.20131	[0.14-0.27] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	4E-9	(-488 ms)	0.19304	[0.13-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	4E-11	(-500 ms)	0.216604	[0.15-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	4E-11	(-498 ms)	0.21574	[0.15-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	3E-10	(-494 ms)	0.206246	[0.14-0.27] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	2E-9	(-490 ms)	0.197556	[0.13-0.26] unit decrease	Affymetrix [10000000] (imputed)	N
792	chr3	27195704	27195705	rs55644439	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p24.1	NEK10	rs55644439-A	0.988544	1E-10	(-496 ms)	0.211403	[0.15-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
793	chr3	27278465	27278466	rs148587130	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3p24.1	NEK10	rs148587130-T	0.013	7E-6	(liability model)	0.36	[0.2-0.52] unit increase	NR [19725427] (imputed)	N
793	chr3	27294654	27294655	rs116303454	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p24.1	NR	rs116303454-G	NR	3E-6		0.383	[0.22-0.54] SD units decrease	NR [10700000] (imputed)	N
793	chr3	27321726	27321727	rs9868937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p24.1		rs9868937-C	NR	1E-10		0.0266	[0.019-0.035] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
793	chr3	27327213	27327214	rs481519	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer (pleiotropy)	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	3p24.1	NEK10	rs481519-T	NR	2E-9	(subset analysis)			Affymetrix, Illumina [9916564] (imputed)	N
793	chr3	27332409	27332417	rs60936670	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	NR	rs60936670-C	0.5245	8E-64	(EA)	0.1056	[0.093-0.118] unit increase	Illumina [~ 11800000] (imputed)	N
793	chr3	27343643	27343644	rs653465	24493630	Ahsan H	2014-02-03	Cancer Epidemiol Biomarkers Prev	A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.	Breast cancer (early onset)	3,523 European ancestry young female cases, 2,702 European ancestry young female controls	3,470 European ancestry young female cases, 5,475 European ancestry young female controls	3p24.1	SLC4A7	rs653465-?	0.54	5E-12		1.18	[1.12-1.23]	Illumina [1265548] (imputed)	N
793	chr3	27352142	27352143	rs646157	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3p24.1		rs646157-A	NR	5E-16		1.0905125	[1.07-1.11]	Affymetrix [7846216] (imputed)	N
793	chr3	27353715	27353716	rs552647	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	3p24.1		rs552647-A	NR	3E-20		0.094	[0.074-0.114] unit increase	Affymetrix, Illumina [25794640] (imputed)	N
793	chr3	27363063	27363064	rs479404	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	3p24.1	NEK10	rs479404-C	0.32175	9E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [43421991] (imputed)	N
793	chr3	27363936	27363937	rs640065	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3p24.1	NEK10	rs640065-A	0.27	3E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr3	27363936	27363937	rs640065	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3p24.1	NEK10	rs640065-A	0.25	1E-21	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr3	27363936	27363937	rs640065	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p24.1	NEK10	rs640065-A	0.25	8E-13	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr3	27363936	27363937	rs640065	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p24.1	NEK10	rs640065-A	0.26	1E-11	(Asian, EA, Hispanic)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr3	27363936	27363937	rs640065	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p24.1	NEK10	rs640065-A	0.27	5E-14	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
793	chr3	27368883	27368884	rs3920005	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	3p24.1		rs3920005-?	NR	8E-14		0.898155	[0.87-0.93]	NR [682398]	N
793	chr3	27370202	27370203	rs1844983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.1		rs1844983-?	NR	3E-11				NR [~ 8900000] (imputed)	N
793	chr3	27371842	27371843	rs1388785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p24.1		rs1388785-?	NR	7E-12				NR [~ 8900000] (imputed)	N
793	chr3	27372221	27372222	rs1388786	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p24.1	NR	rs1388786-A	0.734295	2E-8		0.0434466	[0.028-0.059] unit decrease	Affymetrix [17914406] (imputed)	N
793	chr3	27388819	27388820	rs112238765	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	3p24.1		rs112238765-C	NR	1E-18		1.1053	NR	Affymetrix [7846216] (imputed)	N
794	chr3	27401246	27401247	rs11715126	32808324	Hu J	2020-08-17	Genet Epidemiol	Supervariants identification for breast cancer.	Breast cancer	5,653 cases, 28,241 controls	NA	3p24.1	NR	rs11715126-?		2E-12		0.89	[NR]	NR [41502298] (imputed)	N
794	chr3	27413565	27413566	rs4973766	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	3p24.1	SLC4A7	rs4973766-C	0.542639	4E-12	(EA)	0.00836621	[0.006-0.0107] unit increase	Affymetrix [~ 8800000] (imputed)	N
794	chr3	27413565	27413566	rs4973766	30910378	Zanetti D	2019-03-12	Kidney Int	Identification of 22 novel loci associated with urinary biomarkers of albumin, sodium, and potassium excretion.	Urinary potassium to creatinine ratio	218,435 European ancestry individuals	109,178 European ancestry individuals	3p24.1	SLC4A7	rs4973766-T	0.4558	6E-14		0.021	[0.015-0.027] unit decrease	Affymetrix [19420026] (imputed)	N
794	chr3	27416012	27416013	rs4973768	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p24.1		rs4973768-T	NR	5E-62		1.1	[1.09-1.11]	Affymetrix, Illumina [NR] (imputed)	N
794	chr3	27416012	27416013	rs4973768	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	SLC4A7	rs4973768-T	0.47	5E-57	(EA)	1.11	[1.09-1.13] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
794	chr3	27416012	27416013	rs4973768	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	3p24.1	NR	rs4973768-T	0.47	5E-22		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 14000000] (imputed)	N
794	chr3	27416012	27416013	rs4973768	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	3p24.1	NR	rs4973768-T	0.47	3E-30		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
794	chr3	27416012	27416013	rs4973768	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p24.1	SLC4A7	rs4973768-T	0.47	2E-30		1.1	[1.08-1.12]	Affymetrix, Illumina [~ 2600000] (imputed)	N
794	chr3	27416012	27416013	rs4973768	21263130	Fletcher O	2011-01-24	J Natl Cancer Inst	Novel breast cancer susceptibility locus at 9q31.2: results of a genome-wide association study.	Breast cancer	2,839 European ancestry cases, 3,507 European ancestry controls	9,041 European ancestry cases, 8,980 European ancestry controls	3p24.1	SLC4A7	rs4973768-C	0.49	2E-8		1.14	[1.09-1.19]	Illumina [~ 296114]	N
794	chr3	27416012	27416013	rs4973768	20453838	Turnbull C	2010-05-09	Nat Genet	Genome-wide association study identifies five new breast cancer susceptibility loci.	Breast cancer	3,659 European ancestry cases, 4,897 European ancestry controls	12,576 European ancestry cases, 12,223 European ancestry controls	3p24.1	SLC4A7	rs4973768-T	0.47	6E-7		1.16	[1.10-1.24]	Illumina [582886]	N
794	chr3	27416012	27416013	rs4973768	19330027	Ahmed S	2009-05-01	Nat Genet	Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.	Breast cancer	390 European ancestry cases, 364 European ancestry controls	38,430 European ancestry cases, 2,572 East Asian ancestry cases, 41,926 European ancestry controls, 2,059 East Asian ancestry controls	3p24.1	SLC4A7, NEK10	rs4973768-T	0.46	4E-23		1.11	[1.08-1.13]	Illumina, Perlegen [up to 206586]	N
794	chr3	27423153	27423153	rs34829163	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p24.1	SLC4A7	rs34829163-TA	0.272066	7E-21		0.023841226	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
794	chr3	27425707	27425708	rs116529431	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p24.1	NR	rs116529431-G	NR	7E-6		0.3659	[0.21-0.52] SD units decrease	NR [10700000] (imputed)	N
794	chr3	27425745	27425746	rs4973769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p24.1	SLC4A7	rs4973769-C	0.268305	2E-14		0.019394506	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr3	27427821	27427825	rs72375069	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hypertension	28,391 European ancestry cases, 28,246 European ancestry controls	NA	3p24.1		rs72375069-C	0.3540246	1E-7		0.93		Affymetrix [15650645] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3p24.1	SLC4A7	rs13063291-?	NR	5E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3p24.1	SLC4A7	rs13063291-?	NR	1E-10				Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3p24.1	SLC4A7	rs13063291-?	NR	5E-10				Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3p24.1	SLC4A7	rs13063291-?		3E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3p24.1	SLC4A7	rs13063291-?	NR	2E-11				Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3p24.1	SLC4A7	rs13063291-?	NR	1E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3p24.1	SLC4A7	rs13063291-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27446284	27446285	rs13063291	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3p24.1	SLC4A7	rs13063291-?	NR	2E-8	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
794	chr3	27454215	27454219	rs202170712	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p24.1		rs202170712-T	NR	2E-11		0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
794	chr3	27454215	27454219	rs202170712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p24.1	SLC4A7	rs202170712-T	0.266265	3E-16		0.020876292	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
794	chr3	27457207	27457208	rs11716531	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p24.1	intergenic	rs11716531-A	0.237	6E-14		0.213	[0.16-0.27] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
794	chr3	27457207	27457208	rs11716531	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p24.1	intergenic	rs11716531-A	0.237	2E-11	(EA, initial)	0.347	[0.25-0.45] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
794	chr3	27470733	27470734	rs9848210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p24.1		rs9848210-T	NR	1E-13		0.0308	[0.023-0.039] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
794	chr3	27472935	27472936	rs3755652	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	3p24.1	NEK10, SLC4A7	rs3755652-T	0.224785446963214	3E-8		0.30749527	[0.2-0.42] unit increase	Illumina [247039]	N
794	chr3	27472935	27472936	rs3755652	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3p24.1	SLC4A7	rs3755652-T	0.2361	5E-6		0.0175	unit increase	Illumina [242296]	N
794	chr3	27473065	27473066	rs13077400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs13077400-G	0.221127	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
794	chr3	27473065	27473066	rs13077400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p24.1	NR	rs13077400-G	0.265177	6E-22		0.019911	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
794	chr3	27481040	27481041	rs60605842	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p24.1	SLC4A7	rs60605842-A	0.55	4E-8	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
794	chr3	27483163	27483164	rs55988870	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	3p24.1	SLC4A7	rs55988870-C	0.367162	3E-10		0.053607434	[0.037-0.07] unit decrease	Affymetrix [7288503] (imputed)	N
794	chr3	27490539	27490539	rs571893049	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.1	SLC4A4	rs571893049-CTT	0.6586	2E-11		0.2078	[0.15-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
794	chr3	27506781	27506782	rs749067572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.1	SLC4A7	rs749067572-C	0.558105	2E-9		0.013608051	[0.0092-0.018] unit increase	Affymetrix [93095623] (imputed)	N
794	chr3	27509713	27509714	rs7619833	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	NR	rs7619833-C	0.5251	3E-45	(EA)	0.0874	[0.075-0.1] unit increase	Illumina [~ 11800000] (imputed)	N
794	chr3	27522699	27522700	rs450189	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3p24.1	SLC4A7	rs450189-T	0.56	6E-23	(AA, Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
794	chr3	27522699	27522700	rs450189	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p24.1	SLC4A7	rs450189-T	0.54	3E-20	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27526515	27526516	rs6771541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p24.1		rs6771541-T	NR	5E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
795	chr3	27526515	27526516	rs6771541	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	3p24.1	SLC4A7	rs6771541-T	0.38564	3E-9		1.08	[1.05-1.1]	Affymetrix, Illumina [43421991] (imputed)	N
795	chr3	27534043	27534044	rs118022058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	3p24.1		rs118022058-A	0.082226	1E-8		0.0356594	[0.023-0.048] unit increase	Illumina [13477767] (imputed)	N
795	chr3	27535930	27535931	rs591668	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p24.1	intergenic	rs591668-A	0.396	2E-19		0.0174	[0.014-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
795	chr3	27535930	27535931	rs591668	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	3p24.1	SLC4A7	rs591668-A	0.396391	8E-21		0.07524216	[0.059-0.091] unit decrease	Affymetrix [7288503] (imputed)	N
795	chr3	27537908	27537909	rs13082711	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	3p24.1	SLC4A7	rs13082711-?	NR	3E-11				Affymetrix, Illumina [18800000] (imputed)	N
795	chr3	27537908	27537909	rs13082711	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	3p24.1	SLC4A7	rs13082711-?		7E-12				Affymetrix, Illumina [18800000] (imputed)	N
795	chr3	27537908	27537909	rs13082711	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p24.1	SLC4A7	rs13082711-C	0.227	3E-6	(EA, initial)	0.399	[0.23-0.57] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
795	chr3	27537908	27537909	rs13082711	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p24.1	SLC4A7	rs13082711-C	0.227	3E-10	(EA, initial)	0.331	[0.23-0.43] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
795	chr3	27537908	27537909	rs13082711	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p24.1	SLC4A7, EOMES	rs13082711-T		7E-9		0.161	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27537908	27537909	rs13082711	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3p24.1	SLC4A7	rs13082711-T	0.78	2E-6		0.315	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
795	chr3	27537908	27537909	rs13082711	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3p24.1	SLC4A7	rs13082711-T	0.78	4E-9		0.238	[NR] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
795	chr3	27537908	27537909	rs13082711	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p24.1	SLC4A7	rs13082711-T	0.80	5E-9	(Mean Arterial Pressure)	0.336	[0.22-0.45] mmHg decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
795	chr3	27543654	27543655	rs711737	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p24.1	SLC4A7	rs711737-A	0.604	1E-8		0.334	[0.22-0.45] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
795	chr3	27543654	27543655	rs711737	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p24.1	SLC4A7	rs711737-A	0.604	2E-6		0.17	[0.099-0.241] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
795	chr3	27545137	27545138	rs664223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	3p24.1		rs664223-T	NR	1E-20		0.0749	[0.059-0.091] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
795	chr3	27545137	27545138	rs664223	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	NR	rs664223-T	0.6386	1E-14	(East Asian)	0.5181	[0.39-0.65] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27545137	27545138	rs664223	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	NR	rs664223-T	0.6386	3E-11	(East Asian)	0.3124	[0.22-0.4] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27547082	27547083	rs602543	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p24.1	NR	rs602543-T	0.395549	1E-8		0.0393084	[0.026-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
795	chr3	27548039	27548040	rs2055120	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	3p24.1	SLC4A7	rs2055120-G	0.020410769	5E-7		0.8085	[0.49-1.12] unit increase	Affymetrix [~ 9800000] (imputed)	N
795	chr3	27548899	27548900	rs820430	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	UBA52P4-LOC105377005	rs820430-A	0.36	4E-10	(Japanese)	0.488	[0.34-0.64] unit increase	Illumina [6200000] (imputed)	N
795	chr3	27548899	27548900	rs820430	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p24.1	UBA52P4, LOC105377005	rs820430-A	0.3614	6E-8	(Japanese)	0.2918	[0.19-0.4] unit increase	Illumina [6200000] (imputed)	N
795	chr3	27548899	27548900	rs820430	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	UBA52P4, LOC105377005	rs820430-A	0.3614	2E-7	(Japanese)	0.2894	[0.18-0.4] unit increase	Illumina [6200000] (imputed)	N
795	chr3	27548899	27548900	rs820430	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p24.1	UBA52P4, LOC105377005	rs820430-A	0.3614	4E-7	(Japanese)	0.0702	[0.043-0.097] unit increase	Illumina [6200000] (imputed)	N
795	chr3	27548899	27548900	rs820430	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	3p24.1	SLC4A7	rs820430-A	0.32	1E-12		0.76	[0.54-0.98] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
795	chr3	27548899	27548900	rs820430	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	3p24.1	SLC4A7	rs820430-A	0.32	1E-6				Affymetrix, Illumina [2485448] (imputed)	N
795	chr3	27548899	27548900	rs820430	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	3p24.1	SLC4A7	rs820430-A	0.32	8E-6		0.27	[0.15-0.39] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
795	chr3	27550300	27550301	rs648103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	3p24.1		rs648103-C	NR	2E-22		0.0665	[0.053-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
795	chr3	27550300	27550301	rs648103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	3p24.1		rs648103-C	NR	2E-11		0.0506	[0.036-0.065] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
795	chr3	27562987	27562988	rs2643826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p24.1		rs2643826-T	NR	2E-21		0.0186	[0.015-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
795	chr3	27562987	27562988	rs2643826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p24.1		rs2643826-T	NR	3E-24		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
795	chr3	27562987	27562988	rs2643826	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p24.1		rs2643826-T	NR	4E-18		0.0445	[0.035-0.054] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
795	chr3	27562987	27562988	rs2643826	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	3p24.1	SLC4A7	rs2643826-C	0.5533	4E-8				NR [7320282]	N
795	chr3	27562987	27562988	rs2643826	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3p24.1	U1	rs2643826-T	0.452509	1E-20		0.075560756	[0.06-0.091] unit increase	Affymetrix [7288503] (imputed)	N
795	chr3	27562987	27562988	rs2643826	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p24.1	U1	rs2643826-T	0.453083	7E-19		0.05394899	[0.042-0.066] unit increase	Affymetrix [7288503] (imputed)	N
795	chr3	27562987	27562988	rs2643826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p24.1		rs2643826-?	NR	2E-40				NR [~ 8900000] (imputed)	N
795	chr3	27562987	27562988	rs2643826	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p24.1		rs2643826-?	NR	1E-18				NR [~ 8900000] (imputed)	N
795	chr3	27562987	27562988	rs2643826	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.1	SLC4A7	rs2643826-C	0.4571	3E-29		0.4106	[0.34-0.48] mmHg increase	Affymetrix [NR] (imputed)	N
795	chr3	27562987	27562988	rs2643826	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.1	SLC4A7	rs2643826-C	0.457	6E-18		0.2353	[0.18-0.29] mmHg increase	Affymetrix [NR] (imputed)	N
795	chr3	27562987	27562988	rs2643826	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p24.1	NR	rs2643826-T	0.374	3E-11	(East Asian)	0.0906	[0.064-0.117] unit increase	Illumina [6200000] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.45	3E-23	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.42	6E-32	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.43	3E-15	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.45	2E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.45	6E-14	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p24.1	LOC105377005, SLC4A7	rs2643826-T	0.42	2E-16	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p24.1	NR	rs2643826-C		3E-10		0.349	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p24.1	NR	rs2643826-C		1E-7	(EA)	0.321	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p24.1	NR	rs2643826-C		3E-22		0.376	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p24.1	NR	rs2643826-C		2E-6		0.176	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p24.1	NR	rs2643826-C		2E-15		0.206	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p24.1	NR	rs2643826-C		2E-6		0.171	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27562987	27562988	rs2643826	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p24.1	NR	rs2643826-C		1E-10		0.152	unit decrease	Affymetrix [at least 2696785] (imputed)	N
795	chr3	27583316	27583317	rs12485763	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	3p24.1		rs12485763-A	NR	4E-8		0.2321	[0.15-0.32] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
795	chr3	27592859	27592860	rs4462906	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	LOC105377005	rs4462906-T	0.71	1E-10	(Japanese)	0.6255	[0.44-0.82] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27592859	27592860	rs4462906	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p24.1	LOC105377005	rs4462906-T	0.7078	1E-9	(Japanese)	0.4045	[0.27-0.54] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27592859	27592860	rs4462906	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p24.1	LOC105377005	rs4462906-T	0.7078	3E-7	(Japanese)	0.3519	[0.22-0.49] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27592859	27592860	rs4462906	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p24.1	LOC105377005	rs4462906-T	0.7078	1E-7	(Japanese)	0.0881	[0.055-0.121] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27592859	27592860	rs4462906	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	3p24.1	SLC4A7, EOMES	rs4462906-?	NR	1E-12		0.03521	[0.026-0.045] unit increase	Illumina [6108953] (imputed)	N
795	chr3	27592859	27592860	rs4462906	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Pulse pressure	136,249 Japanese ancestry individuals	NA	3p24.1	SLC4A7, EOMES	rs4462906-?	NR	5E-11		0.03239	[0.023-0.042] unit increase	Illumina [6108953] (imputed)	N
795	chr3	27592859	27592860	rs4462906	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	3p24.1	SLC4A7, EOMES	rs4462906-?	NR	6E-9		0.02899	[0.019-0.039] unit increase novel	Illumina [6108953] (imputed)	N
795	chr3	27593063	27593064	rs35225531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	3p24.1		rs35225531-T	0.290471	3E-12		0.0282144	[0.02-0.036] unit increase	Illumina [13477770] (imputed)	N
795	chr3	27593063	27593064	rs35225531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	145,445 East Asian ancestry individuals	NA	3p24.1		rs35225531-T	0.290502	7E-11		0.02674	[0.019-0.035] unit increase	Illumina [13477769] (imputed)	N
795	chr3	27598648	27598649	rs12498098	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p24.1	NR	rs12498098-T	0.7601	7E-15	(East Asian)	0.4505	[0.34-0.56] unit decrease	Illumina [6200000] (imputed)	N
795	chr3	27614315	27614316	rs9854207	35215271	Almandil NB	2022-01-27	Pharmaceuticals (Basel)	Integration of Transcriptome and Exome Genotyping Identifies Significant Variants with Autism Spectrum Disorder.	Autism spectrum disorder	70 Arab ancestry cases, 132 Arab ancestry controls	NA	3p24.1	NA	rs9854207-C	0.25	6E-6		3.0	[1.848-4.869]	Illumina [243345]	N
795	chr3	27649947	27649948	rs56138756	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	NR	rs56138756-G	0.1527	7E-9	(EA)	0.0508	[0.034-0.068] unit decrease	Illumina [~ 11800000] (imputed)	N
796	chr3	27706297	27706298	rs9820465	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	3p24.1	SLC4A7, EOMES	rs9820465-C	0.205	2E-7			NR	Illumina [7289516] (imputed)	N
796	chr3	27706297	27706298	rs9820465	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	3p24.1	SLC4A7, EOMES	rs9820465-C	0.205	6E-9		0.66	[0.57-0.76]	Illumina [7289516] (imputed)	N
796	chr3	27720362	27720363	rs1494836	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p24.1	SLC4A7, EOMES	rs1494836-?	NR	7E-14		0.732	[0.54-0.92] unit decrease	Affymetrix [11100000] (imputed)	N
796	chr3	27757017	27757018	rs2371108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p24.1		rs2371108-T	NR	7E-18		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
796	chr3	27757017	27757018	rs2371108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p24.1		rs2371108-T	NR	3E-10		0.0147	[0.01-0.019] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
796	chr3	27757017	27757018	rs2371108	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p24.1		rs2371108-G	0.613	2E-18				Affymetrix [10369434] (imputed)	N
796	chr3	27757017	27757018	rs2371108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p24.1	EOMES, RP11-222K16.2	rs2371108-T	0.387146	7E-20		0.020698974	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27757017	27757018	rs2371108	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.1	EOMES, RP11-222K16.2	rs2371108-T	0.387153	2E-30		0.025960956	[0.022-0.03] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27757017	27757018	rs2371108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs2371108-T	0.486269	2E-25				Affymetrix, Illumina [24649327] (imputed)	N
796	chr3	27757017	27757018	rs2371108	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p24.1	NR	rs2371108-T	0.388965	3E-24		0.019217	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
796	chr3	27757017	27757018	rs2371108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p24.1		rs2371108-?	NR	5E-22				NR [~ 8900000] (imputed)	N
796	chr3	27757017	27757018	rs2371108	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3p24.1	EOMES	rs2371108-A	0.39	2E-15		1.1		Illumina [161311]	N
796	chr3	27758274	27758275	rs2887944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p24.1	NR	rs2887944-T	NR	2E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix [9000000] (imputed)	N
796	chr3	27764622	27764623	rs3806624	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	3p24.1		rs3806624-A	NR	4E-11		0.92	[0.89-0.94]	NR [13810676] (imputed)	N
796	chr3	27764622	27764623	rs3806624	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3p24.1		rs3806624-G	NR	1E-7		1.1415524	[1.09-1.2]	Affymetrix [7846216] (imputed)	N
796	chr3	27764622	27764623	rs3806624	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3p24.1	EOMES	rs3806624-A	NR	5E-8		0.078492	[0.049-0.108] unit decrease	Illumina [8380626] (imputed)	N
796	chr3	27764622	27764623	rs3806624	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3p24.1	EOMES	rs3806624-A	0.54	6E-8	(EA)	0.08539	[0.054-0.116] unit decrease	Illumina [8380626] (imputed)	N
796	chr3	27764622	27764623	rs3806624	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.1	EOMES	rs3806624-G	0.56	9E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [up to 9739303] (imputed)	N
796	chr3	27764622	27764623	rs3806624	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p24.1	EOMES	rs3806624-G	0.46	3E-8	(EA)	1.08	[1.05-1.12]	Affymetrix, Illumina [up to 9739303] (imputed)	N
796	chr3	27764622	27764623	rs3806624	24149102	Frampton M	2013-10-22	Nat Commun	Variation at 3p24.1 and 6q23.3 influences the risk of Hodgkin's lymphoma.	Hodgkin's lymphoma	1,465 European ancestry cases, 6,417 European ancestry controls	1,071 European ancestry cases, 953 cases, 1,853 controls	3p24.1	EOMES	rs3806624-G	0.45	1E-12		1.26	[1.18-1.34]	Illumina [296129]	N
796	chr3	27772013	27772014	rs1353286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p24.1		rs1353286-G	0.453004	2E-20		0.020631757	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27772013	27772014	rs1353286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs1353286-G	0.517829	3E-21				Affymetrix, Illumina [19872809] (imputed)	N
796	chr3	27772013	27772014	rs1353286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p24.1	NR	rs1353286-G	0.453022	3E-24		0.020226	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
796	chr3	27772013	27772014	rs1353286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p24.1		rs1353286-?	NR	1E-20				NR [~ 8900000] (imputed)	N
796	chr3	27774051	27774053	rs10572535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p24.1		rs10572535-A	0.407872	2E-21		0.021918204	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27774051	27774053	rs10572535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p24.1		rs10572535-A	0.407865	6E-13		0.016555188	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27774051	27774053	rs10572535	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p24.1		rs10572535-A	0.408079	3E-12		0.015819471	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
796	chr3	27774051	27774053	rs10572535	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3p24.1	NR	rs10572535-I	0.591921	2E-12		0.015893	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
796	chr3	27774244	27774245	rs6801231	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p24.1	intergenic	rs6801231-A	0.3663	7E-13		0.02684719	[0.02-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
796	chr3	27777778	27777779	rs9880772	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	3p24.1	EOMES	rs9880772-A	NR	2E-9		1.16	[1.11-1.22]	Affymetrix, Illumina [> 10000000] (imputed)	N
796	chr3	27777778	27777779	rs9880772	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	3p24.1	EOMES	rs9880772-A	NR	7E-9				Illumina [10806625] (imputed)	N
796	chr3	27777778	27777779	rs9880772	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	3p24.1	EOMES	rs9880772-T	0.465	3E-11		1.19	[1.13-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
796	chr3	27777778	27777779	rs9880772	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	3p24.1	EOMES	rs9880772-A	0.53	3E-8		1.098901	[1.06-1.14]	Illumina [133816] (imputed)	N
796	chr3	27783014	27783015	rs13327021	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p24.1	EOMES	rs13327021-T	NR	2E-16		1.0831889	NR	Affymetrix, Illumina [8278136] (imputed)	N
796	chr3	27783475	27783476	rs4680838	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3p24.1		rs4680838-A	0.548	2E-12				Affymetrix [10369434] (imputed)	N
796	chr3	27784996	27784997	rs9310852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs9310852-G	0.513123	2E-10				Affymetrix, Illumina [19905671] (imputed)	N
796	chr3	27786022	27786022	rs145548114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p24.1		rs145548114-AAAAC	NR	2E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
797	chr3	27788779	27788780	rs11129295	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.1	EOMES	rs11129295-A	NR	1E-9	(Conditioned on rs669607)	1.11	[1.09-1.12]	Illumina [465434]	N
797	chr3	27794906	27794907	rs13093489	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	3p24.1	EOMES	rs13093489-A	0.334	9E-8		1.1		Illumina [128935]	N
797	chr3	27794906	27794907	rs13093489	23749187	Cortes A	2013-07-01	Nat Genet	Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci.	Ankylosing spondylitis	9,069 European ancestry cases, 1,550 East Asian ancestry cases, 13,578 European ancestry controls, 1,567 East Asian ancestry controls	NA	3p24.1	EOMES	rs13093489-A	0.334	1E-7	(EA)	1.12		Illumina [128935]	N
797	chr3	27800733	27800734	rs6795177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p24.1		rs6795177-G	0.479382	9E-13		0.015803702	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
797	chr3	27831977	27831978	rs6551229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p24.1		rs6551229-A	NR	3E-14		0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
797	chr3	27834746	27834747	rs9826413	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3p24.1	EOMES	rs9826413-T	0.06	2E-8		2.0	[1.29-2.71] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
798	chr3	27924504	27924505	rs2618101	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p24.1	EOMES	rs2618101-G	NR	9E-8		1.0674636	NR	Affymetrix, Illumina [8278136] (imputed)	N
798	chr3	27978572	27978573	rs73053542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p24.1	Intergenic	rs73053542-G	0.9706	2E-8		0.0374	[0.024-0.051] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr3	27989384	27989385	rs12632898	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p24.1	Intergenic	rs12632898-G	0.7881	2E-8		0.0134	[0.0087-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr3	27994768	27994769	rs73053559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p24.1	Intergenic	rs73053559-A	0.2129	4E-10	(MTAG)	0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
798	chr3	27997658	27997659	rs75468549	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01967	rs75468549-?	NR	3E-8		1.5174	[NR] unit decrease	Affymetrix [NR] (imputed)	N
798	chr3	28007314	28007315	rs12630663	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3p24.1	NR	rs12630663-T	0.5885	1E-8	(total)	455.4403	[298.47-612.41] unit decrease	Affymetrix, Illumina [NR]	N
798	chr3	28018077	28018078	rs899269	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p24.1	Intergenic	rs899269-?		8E-6		1.3333333	[1.18-1.54]	Illumina [7645193] (imputed)	N
798	chr3	28027537	28027538	rs73055556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p24.1	Intergenic	rs73055556-A	0.1379	2E-11	(MTAG)	0.016	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
798	chr3	28027537	28027538	rs73055556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p24.1		rs73055556-A	0.1385	5E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
798	chr3	28027537	28027538	rs73055556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p24.1	Intergenic	rs73055556-A	0.1385	1E-9	(MTAG)	0.0116	[0.0079-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
799	chr3	28057904	28057905	rs1532244	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Liver transplant-free survival in primary sclerosing cholangitis (time to event)	874 European ancestry liver transplantation cases , 2,444 European ancestry liver transplant-free cases	NA	3p24.1	CMC1	rs1532244-G	NR	9E-7				Illumina [130422]	N
799	chr3	28061691	28061692	rs383083	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	3p24.1	AC092415.1	rs383083-A	0.343	9E-6		0.0269	[0.015-0.039] unit increase	Affymetrix, Illumina [NR] (imputed)	N
799	chr3	28071443	28071444	rs669607	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels or multiple sclerosis	3,599 individuals, 1,956 Mexican American individuals, 5,545 European ancestry multiple sclerosis cases, 12,153 European ancestry non-multiple sclerosis controls		3p24.1	EOMES	rs669607-A	NR	4E-9				Illumina [up to 2529394] (imputed)	N
799	chr3	28071443	28071444	rs669607	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3p24.1	intergenic	rs669607-C	NR	2E-15		1.13	[1.12-1.15]	Illumina [465434]	N
799	chr3	28072085	28072086	rs438613	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	3p24.1	LINC01980, CMC1	rs438613-C	NR	1E-8		1.1	[1.07-1.13]	Illumina [NR] (imputed)	N
799	chr3	28072085	28072086	rs438613	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls	NA	3p24.1	LINC01980, CMC1	rs438613-C	NR	6E-8		1.125	[1.08-1.17]	Illumina [5719137] (imputed)	N
799	chr3	28072085	28072086	rs438613	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	3p24.1	CMC1	rs438613-T	0.588	8E-9		0.92	[0.89-0.95]	Illumina [11270530] (imputed)	N
799	chr3	28072085	28072086	rs438613	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p24.1	EOMES	rs438613-C	NR	2E-49		1.1504	NR	Affymetrix, Illumina [8278136] (imputed)	N
799	chr3	28075984	28075985	rs427221	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3p24.1	EOMES, CMC1	rs427221-C	0.479	5E-6		1.08	[NR]	NR [6344733] (imputed)	N
799	chr3	28076282	28076283	rs376072	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p24.1	intergenic	rs376072-?	NR	5E-6		1.1235955	[1.06-1.18]	Illumina [at least 5000000] (imputed)	N
799	chr3	28078570	28078571	rs1813375	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3p24.1	Intergenic	rs1813375-A	0.49	2E-32		1.15		Illumina [161311]	N
799	chr3	28079084	28079085	rs170934	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	3p24.1	EOMES	rs170934-T	0.48	2E-8		1.17	[NR]	Affymetrix, Illumina [2529394]	N
799	chr3	28081441	28081442	rs338610	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	3p24.1	CMC1	rs338610-?	NR	3E-7			[0.8376-0.9303]	NR [2492237]	N
799	chr3	28133396	28133397	rs1506686	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	3p24.1	NR	rs1506686-C	0.987658	2E-6		0.314	[0.18-0.44] unit decrease	NR [9260588] (imputed)	N
799	chr3	28163156	28163157	rs7427073	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p24.1	CMC1	rs7427073-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
800	chr3	28192632	28192633	rs75233056	29563342	Li XS	2018-03-22	JCI Insight	Untargeted metabolomics identifies trimethyllysine, a TMAO-producing nutrient precursor, as a predictor of incident cardiovascular disease risk.	Plasma trimethyllysine levels	1,297 European ancestry individuals	NA	3p24.1	NR	rs75233056-A	0.06	1E-7		0.158	[0.099-0.217] unit increase	Affymetrix [9012028] (imputed)	N
800	chr3	28199987	28199988	rs144699095	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3p24.1	Intergenic	rs144699095-T	NR	9E-6		0.144074	[0.08-0.208] unit decrease	Illumina [13519193] (imputed)	N
800	chr3	28199987	28199988	rs144699095	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p24.1	Intergenic	rs144699095-T	NR	8E-6		0.133001	[0.075-0.191] unit decrease	Illumina [13520550] (imputed)	N
800	chr3	28206876	28206877	rs9310862	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Behavioural disinhibition (generation interaction)	3,852 European ancestry parents, 3,336 European ancestry offspring	NA	3p24.1	NR	rs9310862-G	0.496	4E-6	(Illicit drug use)			Illumina [527829]	N
800	chr3	28272477	28272478	rs56365817	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Lymphocyte counts	62,076 Japanese ancestry individuals	NA	3p24.1	LOC100996624, CMC1	rs56365817-?	NR	2E-8		0.03205	[0.021-0.043] unit increase novel	Illumina [6108953] (imputed)	N
800	chr3	28284621	28284622	rs75831154	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs75831154-G	0.216888	2E-44				Affymetrix, Illumina [23472807] (imputed)	N
800	chr3	28285443	28285444	rs77661738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p24.1		rs77661738-C	NR	4E-34		0.0312	[0.026-0.036] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
800	chr3	28285443	28285444	rs77661738	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p24.1	CMC1	rs77661738-C	0.175287	2E-28		0.032320656	[0.027-0.038] unit increase	Affymetrix [93095623] (imputed)	N
800	chr3	28286260	28286261	rs10510607	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p24.1		rs10510607-C	0.826	4E-20				Affymetrix [10369434] (imputed)	N
800	chr3	28286260	28286261	rs10510607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p24.1	CMC1	rs10510607-T	0.174091	1E-9		0.017836364	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
800	chr3	28286260	28286261	rs10510607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	89,266 East Asian ancestry individuals	NA	3p24.1	NR	rs10510607-C	0.531117	8E-10		0.029272	[0.02-0.039] SD units decrease	Affymetrix, Illumina [16289068] (imputed)	N
800	chr3	28286260	28286261	rs10510607	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3p24.1	CMC1	rs10510607-?	NR	4E-7	(subset analysis)			Illumina [130052]	N
800	chr3	28286677	28286678	rs77259676	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.1	NR	rs77259676-?	NR	2E-8				Illumina [7760689] (imputed)	N
800	chr3	28287734	28287735	rs74280151	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p24.1		rs74280151-C	0.825	9E-28				Affymetrix [10369434] (imputed)	N
800	chr3	28287734	28287735	rs74280151	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p24.1	NR	rs74280151-T	0.174782	2E-38		0.028848	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
800	chr3	28290463	28290464	rs56029590	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3p24.1		rs56029590-G	0.825	7E-17				Affymetrix [10369434] (imputed)	N
800	chr3	28293359	28293360	rs4680748	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p24.1	Intergenic	rs4680748-?	NR	2E-6		1.3867704	[NR]	Affymetrix [492217] (imputed)	N
800	chr3	28295652	28295653	rs75033378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.1	CMC1	rs75033378-T	0.175387	1E-20		0.029459313	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
800	chr3	28299991	28299992	rs13092618	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	3p24.1		rs13092618-?	NR	8E-7		4.95	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
800	chr3	28299991	28299992	rs13092618	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	3p24.1		rs13092618-?	NR	2E-6		0.05	[0.03-0.07] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
800	chr3	28299991	28299992	rs13092618	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	3p24.1		rs13092618-?	NR	8E-7		4.93	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
800	chr3	28302787	28302788	rs11921493	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.1	NR	rs11921493-?	NR	4E-11				Affymetrix [NR]	N
800	chr3	28303029	28303030	rs4502545	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p24.1		rs4502545-G	0.825	5E-22				Affymetrix [10369434] (imputed)	N
800	chr3	28303029	28303030	rs4502545	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3p24.1	CMC1	rs4502545-A	0.1762	4E-12		0.03256658	[0.023-0.042] unit increase	Affymetrix [~ 2500000] (imputed)	N
800	chr3	28303029	28303030	rs4502545	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p24.1	CMC1	rs4502545-A	0.1761	2E-14		0.03631929	[0.027-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
801	chr3	28321585	28321586	rs4585155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p24.1	NR	rs4585155-G	0.483283	8E-11		0.012249	[0.0086-0.0159] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
801	chr3	28321585	28321586	rs4585155	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p24.1		rs4585155-?	NR	6E-9				NR [~ 8900000] (imputed)	N
801	chr3	28332234	28332235	rs73822569	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	NR	rs73822569-G	0.0054	1E-6	(EA)	0.2565	[0.15-0.36] unit increase	Illumina [~ 11800000] (imputed)	N
801	chr3	28334650	28334651	rs12107556	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p24.1		rs12107556-?	NR	5E-8				Affymetrix [NR] (imputed)	N
801	chr3	28412965	28412966	rs6551253	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	3p24.1	ZCWPW2	rs6551253-C	0.22	3E-6		0.518	[0.3-0.73] unit decrease	Illumina [6380737] (imputed)	N
802	chr3	28513402	28513403	rs139372065	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Colon cancer	3,793 European ancestry cases, 410,350 European ancestry controls	NA	3p24.1		rs139372065-G	0.012974	8E-7		1.5422578	NR	Affymetrix [7846216] (imputed)	N
802	chr3	28513402	28513403	rs139372065	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3p24.1		rs139372065-G	0.012974	8E-7		1.5360984	[1.3-1.82]	Affymetrix [7846216] (imputed)	N
802	chr3	28520575	28520576	rs60690028	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p24.1	ZCWPW2	rs60690028-C	0.414973	3E-14		0.017054437	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
802	chr3	28543188	28543189	rs1457908	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p24.1	ZCWPW2	rs1457908-T	0.411683	6E-9		0.014182605	[0.0094-0.019] unit increase	Affymetrix [93095623] (imputed)	N
802	chr3	28563703	28563704	rs7631793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	3p24.1		rs7631793-C	0.458901	2E-9		0.0266438	[0.018-0.035] unit increase	Illumina [13471431] (imputed)	N
803	chr3	28575931	28575932	rs4342066	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p24.1	Intergenic	rs4342066-?	NR	3E-6		1.408054	[NR]	Affymetrix [492217] (imputed)	N
803	chr3	28620642	28620643	rs150867049	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3p24.1	LINC00693	rs150867049-G	NR	2E-6		0.119637	[0.07-0.169] unit increase	Illumina [13519193] (imputed)	N
803	chr3	28620642	28620643	rs150867049	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p24.1	LINC00693	rs150867049-G	NR	1E-6		0.111736	[0.067-0.157] unit increase	Illumina [13520550] (imputed)	N
803	chr3	28633411	28633412	rs112779669	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p24.1	NR	rs112779669-?	NR	5E-9				Illumina [7760689] (imputed)	N
803	chr3	28681919	28681920	rs150200887	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	3p24.1		rs150200887-?	NR	2E-8		2.2039	[1.43-2.97] unit decrease	Affymetrix [NR] (imputed)	N
803	chr3	28692135	28692136	rs115249766	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	3p24.1	NR	rs115249766-C	NR	1E-6		1.4912	[1.33-1.65]	Illumina [11600722] (imputed)	N
804	chr3	28705689	28705690	rs6808178	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3p24.1	LINC00693	rs6808178-T	0.3794	8E-12		0.0658	[0.047-0.085] unit increase	NR [7784415] (imputed)	N
804	chr3	28705763	28705764	rs7617877	21044948	Spencer CC	2010-11-02	Hum Mol Genet	Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21.	Parkinson's disease	1,705 European ancestry cases, 5,175 European ancestry controls	1,039 European ancestry cases, 1,984 European ancestry controls		NR	rs7617877-A	0.36	3E-6		1.23	[1.13-1.33]	Illumina [532616]	N
804	chr3	28731809	28731810	rs9869477	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p24.1	NR	rs9869477-G	0.562	4E-9		0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
804	chr3	28785225	28785226	rs4680707	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p24.1		rs4680707-?	NR	3E-6		0.4522634	[0.26-0.64] unit increase	Illumina [9875426] (imputed)	N
804	chr3	28793457	28793458	rs2126316	33213513	Ibanez L	2020-11-19	Acta Neuropathol Commun	Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease.	Alpha synuclein levels (MTAG)	1744 European ancestry individuals	NA	3p24.1	NR	rs2126316-G	NR	1E-6		0.019641895	[0.012-0.028] unit decrease	Illumina [NR] (imputed)	N
804	chr3	28796676	28796677	rs1011416	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.1		rs1011416-?	NR	9E-10				NR [~ 8900000] (imputed)	N
804	chr3	28807440	28807441	rs9824196	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p24.1	NR	rs9824196-T	0.720896	4E-16		0.025986	[0.019-0.033] unit increase	Affymetrix [16577424] (imputed)	N
804	chr3	28810587	28810588	rs7610366	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p24.1	NR	rs7610366-T	0.725738	2E-11		0.0211166	[0.014-0.028] unit increase	Affymetrix [16577313] (imputed)	N
805	chr3	28878687	28878688	rs17022021	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3p24.1	Intergenic	rs17022021-T	0.843	8E-6	(liability model)	0.09	[0.051-0.129] unit decrease	NR [19725427] (imputed)	N
805	chr3	28928859	28928860	rs2221154	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	3p24.1	intergenic	rs2221154-?	NR	3E-6		1.75	[1.39-2.22]	Illumina [2505093] (imputed)	N
805	chr3	28929229	28929230	rs4680793	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p24.1	NR	rs4680793-A	NR	2E-6		0.123	[0.073-0.173] unit decrease	Illumina [11133794] (imputed)	N
805	chr3	28964800	28964801	rs4016429	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	3p24.1	LINC00693	rs4016429-C	0.0157	2E-6		4.564	[NR] unit decrease	Illumina [1216189] (imputed)	N
806	chr3	28994182	28994183	rs1874256	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p24.1	intergenic	rs1874256-A	NR	9E-6		0.07	[0.031-0.109] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
806	chr3	28994182	28994183	rs1874256	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p24.1	RBMS3	rs1874256-A	NR	4E-6	(females)	0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
806	chr3	29001594	29001595	rs4680797	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3p24.1	NR	rs4680797-T	NR	1E-6	(male)	0.2589	[0.15-0.36] unit decrease	Illumina [11133794] (imputed)	N
806	chr3	29024236	29024237	rs7630386	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	3p24.1	RBMS3	rs7630386-?		1E-6		22.38	[16.88-27.88] unit increase	Illumina [~ 4900000] (imputed)	N
806	chr3	29047443	29047444	rs6790709	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	3p24.1	intergenic	rs6790709-?	NR	3E-6	(Additive model)	0.36	unit decrease	Illumina [542562]	N
806	chr3	29055144	29055145	rs17718700	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease-related phenotype (Socransky)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	3p24.1	RBMS3	rs17718700-?	NR	5E-8		1.22	[0.79-1.65] unit increase	Affymetrix [2135235] (imputed)	N
806	chr3	29081261	29081262	rs187206368	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.1	Intergenic	rs187206368-A	0.997	1E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
806	chr3	29081261	29081262	rs187206368	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p24.1	Intergenic	rs187206368-A	0.997	4E-6	(AA)	0.943	NR unit increase	Illumina [NR] (imputed)	N
807	chr3	29143587	29143588	rs606475	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p24.1	intergenic	rs606475-G	0.84524213534126	2E-6	(G_Collinsella_RNT)	0.154363	[0.091-0.217] unit increase	Illumina [7711310] (imputed)	N
807	chr3	29200397	29200398	rs139260327	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	3p24.1	NR	rs139260327-?	NR	4E-6		0.1087	[0.062-0.155] unit increase	Illumina [at least 560000] (imputed)	N
807	chr3	29209150	29209151	rs6549915	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	3p24.1	MESTP4, RBMS3	rs6549915-T	0.444	9E-6		0.078	[0.043-0.113] cup size decrease	Illumina [7422970] (imputed)	N
808	chr3	29246180	29246181	rs58383906	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	3p24.1	LINC00693, RBMS3-AS3	rs58383906-?	NR	3E-6	(Slavic)			Affymetrix [5045527] (imputed)	N
808	chr3	29275645	29275646	rs4680719	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA)	up to 398 European ancestry individuals	NA	3p24.1	intergenic	rs4680719-A	NR	3E-6		0.2301	unit increase	Illumina [5767231] (imputed)	N
808	chr3	29298403	29298404	rs2371605	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	3p24.1	NR	rs2371605-?	NR	6E-7		0.1546	[0.094-0.215] unit increase	Illumina [~ 7800000] (imputed)	N
808	chr3	29304319	29304320	rs17023089	29535761	Haaland OA	2018-02-26	Front Genet	A Genome-Wide Search for Gene-Environment Effects in Isolated Cleft Lip with or without Cleft Palate Triads Points to an Interaction between Maternal Periconceptional Vitamin Use and Variants in ESRRG.	Cleft lip with or without cleft palate (maternal periconceptional alcohol intake interaction)	up to 825 European ancestry case-parent trios, up to 1,024 Asian ancestry case-parent trios, up to 59 case-parent trios	NA	3p24.1	RBMS3	rs17023089-?		7E-6		3.125	[1.89-5.26]	Illumina [341191]	N
808	chr3	29329019	29329020	rs9832625	24785509	Barnett GC	2014-04-28	Radiother Oncol	A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity.	Response to radiotherapy in cancer (late toxicity)	579 European ancestry prostate cancer cases, 1,194 European ancestry breast cancer cases	516 European ancestry prostate cancer cases, 862 prostate cancer cases, 355 breast cancer cases	3p24.1	RBMS3	rs9832625-?	0.08	3E-6	(Prostate cancer, rectal incontinence, univariable analysis)	0.07	[NR] unit increase	Illumina [2417493] (imputed)	N
808	chr3	29335844	29335845	rs115182009	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	3p24.1		rs115182009-?	NR	9E-7		1.1320451	[1.07736232464059-1.18950359290152]	Illumina [up to 7827597] (imputed)	N
808	chr3	29338494	29338495	rs6799108	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	3p24.1	RBMS3	rs6799108-C	NR	3E-6		0.14	[0.081-0.199] unit increase	Illumina [NR] (imputed)	N
808	chr3	29359951	29359952	rs57440162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p24.1		rs57440162-C	NR	2E-17		0.0197	[0.015-0.024] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
808	chr3	29359951	29359952	rs57440162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p24.1		rs57440162-C	NR	7E-10		0.0143	[0.0098-0.0188] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
809	chr3	29374218	29374219	rs72851229	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	3p24.1	RBMS3	rs72851229-G	0.8255	4E-9		0.1364	[0.091-0.182] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
809	chr3	29393643	29393644	rs11129361	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11129361-A	0.657353	3E-15		0.0730027	[0.054-0.092] decrease	Affymetrix [11014269] (imputed)	N
809	chr3	29393867	29393868	rs11917483	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3p24.1	RBMS3	rs11917483-?	NA	1E-10		1.66	[1.15-2.17] unit decrease	Affymetrix [5541230] (imputed)	N
809	chr3	29396974	29396975	rs77047582	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Antisaccade task score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p24.1	RBMS3	rs77047582-C	NR	1E-6		0.09777641	[0.061-0.134] unit decrease	Illumina [> 6200000] (imputed)	N
809	chr3	29398713	29398714	rs142836448	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	3p24.1	RBMS3	rs142836448-?		2E-6	(French Canadians)	2.66475		Illumina [7614484] (imputed)	N
809	chr3	29408655	29408656	rs7428320	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	3p24.1	RBMS3	rs7428320-G	0.689798468	1E-6		1.0849946	[1.05-1.12]	Illumina [10439017] (imputed)	N
809	chr3	29431564	29431565	rs28723417	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p24.1	RBMS3	rs28723417-A	0.74	2E-8		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
809	chr3	29431564	29431565	rs28723417	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p24.1	RBMS3	rs28723417-A	0.72	5E-8	(EA)	0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
809	chr3	29443962	29443963	rs4130686	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p24.1	RBMS3	rs4130686-?		3E-12				Affymetrix, Illumina [NR] (imputed)	N
809	chr3	29453866	29453867	rs75859393	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p24.1	NR	rs75859393-A	0.05	3E-6		0.327336	[0.19-0.46] unit increase	Illumina [~ 6600000] (imputed)	N
809	chr3	29456156	29456157	rs17023449	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p24.1	RBMS3, RPS12P5, RBMS3-AS3, RBMS3-AS2	rs17023449-G	NR	8E-6	(number of awakenings after sleep onset, weekdays)	0.3081	[0.17-0.44] unit decrease	Affymetrix [7141204] (imputed)	N
809	chr3	29459966	29459967	rs28373428	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.1	RBMS3	rs28373428-G	0.856296	4E-20		0.0241807	[0.019-0.029] unit decrease	NR [13737936] (imputed)	N
809	chr3	29459966	29459967	rs28373428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.1		rs28373428-?	NR	2E-14				NR [~ 8900000] (imputed)	N
809	chr3	29459966	29459967	rs28373428	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.1		rs28373428-?	NR	2E-14		0.0220506	[0.016-0.028] unit decrease	Affymetrix [20259828] (imputed)	N
809	chr3	29469674	29469675	rs17666332	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p24.1	RBMS3	rs17666332-T	0.7235	9E-24		0.0267	[0.021-0.032] unit increase	Affymetrix [19819130] (imputed)	N
809	chr3	29469674	29469675	rs17666332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p24.1		rs17666332-?	NR	3E-30				NR [~ 8900000] (imputed)	N
809	chr3	29469674	29469675	rs17666332	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p24.1	RBMS3	rs17666332-T	0.72	5E-8	(EA)	0.003	[0.002-0.004] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
809	chr3	29470188	29470189	rs187420482	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3p24.1	NR	rs187420482-G	0.01	7E-6		1.6	[1.38-1.82]	Illumina [8468885] (imputed)	N
809	chr3	29472269	29472269	rs6147748	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p24.1	RBMS3	rs6147748-?	NR	1E-9		0.4384	[0.3-0.58] unit increase	Affymetrix [11100000] (imputed)	N
809	chr3	29472411	29472412	rs13073544	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p24.1	RBMS3	rs13073544-C	0.28	2E-8		1.06	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
809	chr3	29486585	29486586	rs9830575	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	3p24.1		rs9830575-A	0.972748	6E-7		0.0407507	[0.025-0.057] unit decrease	Illumina [13900000] (imputed)	N
810	chr3	29514224	29514224	rs35448836	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3p24.1	NR	rs35448836-?	NR	5E-6		0.138603	[0.079-0.198] unit decrease	NR [13958389] (imputed)	N
810	chr3	29556124	29556125	rs76632561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls, 10,163 East Asian ancestry cases, 168,563 East Asian ancestry controls	NA	3p24.1		rs76632561-G	NR	6E-9		0.1581	[0.1-0.21] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
810	chr3	29571563	29571564	rs116753621	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	3p24.1	NR	rs116753621-A	0.01582	2E-6		0.5859	[0.35-0.82] unit increase	Illumina [10677593] (imputed)	N
810	chr3	29575262	29575263	rs1968514	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antihistamines for systemic use)	13,984 European ancestry cases, 137,652 European ancestry controls	NA	3p24.1	RBMS3	rs1968514-A	0.0571983	8E-10		0.16540274	[0.11-0.22] unit decrease	Affymetrix [7288503] (imputed)	N
810	chr3	29575462	29575463	rs1530057	19654303	Broderick P	2009-08-04	Cancer Res	Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.	Lung cancer	1,952 European ancestry cases, 1,438 European ancestry controls	2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals	3p24.1	NR	rs1530057-?	NR	3E-6		1.26	[NR]	Illumina [511919]	N
811	chr3	29625115	29625116	rs75412999	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p24.1		rs75412999-?	NR	3E-8				NR [~ 8900000] (imputed)	N
811	chr3	29626413	29626414	rs9835863	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p24.1	RBMS3-AS2, RP11-9J18.1, RBMS3	rs9835863-T	0.9684	1E-6		0.1009	[0.061-0.141] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
811	chr3	29749357	29749358	rs1440518	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Bipolar disorder	24,267 European ancestry cases, 3,027 African American cases, 1,032 Latino cases, 79,492 European ancestry controls, 8,097 African American controls, 3,090 Latino controls	NA	3p24.1	RBMS3	rs1440518-A	NR	3E-8		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
812	chr3	29756377	29756378	rs9834021	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3p24.1	AC073626.2, FOXP2	rs9834021-T	0.4915	3E-8		0.02283833	[0.015-0.031] unit decrease	NR [NR]	N
812	chr3	29764314	29764315	rs12374076	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p24.1	NR	rs12374076-G	0.505942741704811	2E-9		0.0055484707	[0.0037-0.0073] unit increase	NR [NR]	N
812	chr3	29764314	29764315	rs12374076	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p24.1	NR	rs12374076-G	0.505942741704811	3E-9		0.008748686	[0.0059-0.0116] unit increase	NR [NR]	N
812	chr3	29764314	29764315	rs12374076	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p24.1	NR	rs12374076-G	0.505942741704811	3E-9		0.005621972	[0.0038-0.0075] unit increase	NR [NR]	N
812	chr3	29780038	29780039	rs1348049	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p24.1	NR	rs1348049-G	0.512632576496172	4E-9		0.0067203827	[0.0045-0.009] unit increase	NR [NR]	N
812	chr3	29784900	29784901	rs6771444	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p24.1	NR	rs6771444-A	0.502741126237515	3E-8		0.0069708754	[0.0045-0.0094] unit increase	NR [NR]	N
812	chr3	29795069	29795070	rs11709462	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.1	TGFBR2	rs11709462-?	NR	4E-6	(LPE 18:0)	0.39709133	[0.23-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
812	chr3	29805344	29805345	rs9852393	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p24.1	NR	rs9852393-?	NR	2E-6				Affymetrix [NR]	N
812	chr3	29822597	29822598	rs2371824	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p24.1	RBMS3	rs2371824-T	0.832	4E-6	(AA)	0.162	NR unit increase	Illumina [NR] (imputed)	N
812	chr3	29824764	29824765	rs6762867	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p24.1	RBMS3	rs6762867-C	0.832	4E-6	(AA)	0.162	NR unit increase	Illumina [NR] (imputed)	N
812	chr3	29825158	29825159	rs6765707	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p24.1	RBMS3	rs6765707-T	0.832	4E-6	(AA)	0.162	NR unit increase	Illumina [NR] (imputed)	N
812	chr3	29846392	29846393	rs41402044	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females, 4,182 Korean ancestry males	NA	3p24.1		rs41402044-A	0.04	5E-7		0.94	unit increase	Affymetrix [NR] (imputed)	N
812	chr3	29846392	29846393	rs41402044	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	3p24.1		rs41402044-A	0.04	4E-7		1.38	unit increase	Affymetrix [NR] (imputed)	N
812	chr3	29853402	29853403	rs10510628	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	3p24.1	RBMS3	rs10510628-?	NR	3E-6	(TRBMDm)			Affymetrix [70897]	N
813	chr3	29891800	29891801	rs7633961	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	Basal ganglia growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals, 15 admixed individuals, 80 other ancestries individuals	NA	3p24.1	RBMS3	rs7633961-?	NR	3E-6				Illumina [at least 653030]	N
813	chr3	29896737	29896738	rs76367986	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs76367986-A	0.01045	4E-12	(ACADVL)	1.31	NR unit increase	Illumina [1671387] (imputed)	N
813	chr3	29902503	29902504	rs376453164	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p24.1	RBMS3	rs376453164-A	0.0171523371620309	3E-7	(F_Sutterellaceae_HB)	1.40348	[0.87-1.94] unit decrease	Illumina [7711310] (imputed)	N
813	chr3	29941912	29941913	rs116490684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs116490684-G	0.0122	2E-8	(SLC25A5)	0.09168	NR unit increase	Illumina [1671387] (imputed)	N
813	chr3	29941912	29941913	rs116490684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs116490684-G	0.0122	1E-8	(SDHA)	0.2385	NR unit increase	Illumina [1671387] (imputed)	N
813	chr3	29956942	29956943	rs6778759	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	3p24.1		rs6778759-T	NR	2E-10	(additive)	1.039	[0.719-1.359] unit increase	Illumina [5894709] (imputed)	N
813	chr3	29959622	29959623	rs72848076	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs72848076-C	0.01045	2E-10	(COL14A1)	0.1848	NR unit increase	Illumina [1671387] (imputed)	N
813	chr3	29991046	29991047	rs58260726	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs58260726-A	0.01568	2E-8	(ABAT)	1.727	NR unit increase	Illumina [1671387] (imputed)	N
814	chr3	30029026	30029027	rs6549962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.1		rs6549962-?	NR	3E-8				NR [~ 8900000] (imputed)	N
814	chr3	30029026	30029027	rs6549962	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p24.1		rs6549962-?	NR	2E-9		0.015053	[0.01-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
814	chr3	30061670	30061671	rs7432244	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.1	TGFBR2	rs7432244-?	NR	7E-6	(citrulline)	0.5898453	[0.33-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
814	chr3	30067884	30067884	rs34172563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p24.1		rs34172563-CTT	NR	3E-9		0.0098	[0.0067-0.0129] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
814	chr3	30072306	30072307	rs1506297	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p24.1	RBMS3	rs1506297-T	NR	3E-7		1.06	[1.04-1.08]	Illumina [6627481] (imputed)	N
814	chr3	30072306	30072307	rs1506297	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p24.1	RBMS3	rs1506297-T	NR	2E-7	(EA)	1.0625	[1.04-1.09]	Illumina [6627481] (imputed)	N
814	chr3	30072306	30072307	rs1506297	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p24.1	intergenic	rs1506297-T	NR	8E-7		1.058	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
814	chr3	30072306	30072307	rs1506297	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p24.1	NR	rs1506297-T	NR	7E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
814	chr3	30078270	30078271	rs9873478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.1		rs9873478-?	NR	6E-13				NR [~ 8900000] (imputed)	N
814	chr3	30081784	30081785	rs34170044	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p24.1		rs34170044-C	NR	1E-11		0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
814	chr3	30085221	30085222	rs7427882	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	3p24.1	Intergenic	rs7427882-?	0.752	5E-6		1.2987013	[NR]	Illumina [2483385] (imputed)	N
814	chr3	30101253	30101254	rs11711327	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	3p24.1	NR	rs11711327-A	0.65	3E-6		4.65	[NR] z score increase	Illumina [9009554] (imputed)	N
814	chr3	30118478	30118479	rs35623800	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	3p24.1	NR	rs35623800-?	NR	8E-6		0.03841	[0.022-0.055] unit decrease	Affymetrix [9658292] (imputed)	N
814	chr3	30122692	30122693	rs561883889	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs561883889-A	0.05401	9E-9	(S100A4)	0.04835	NR unit increase	Illumina [1671387] (imputed)	N
814	chr3	30122692	30122693	rs561883889	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p24.1	NR	rs561883889-A	0.05401	3E-8	(ARHGDIB)	0.03743	NR unit increase	Illumina [1671387] (imputed)	N
814	chr3	30134492	30134493	rs7611558	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum omega-6 to omega-3 polyunsaturated fatty acid ratio in metabolic syndrome	426 Mediterranean individuals	NA	3p24.1	intergenic	rs7611558-T	0.38	8E-7		0.025	[0.015-0.035] unit decrease	Illumina [621723]	N
815	chr3	30178162	30178163	rs79190537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs79190537-A	0.355096	3E-11				Affymetrix, Illumina [24653286] (imputed)	N
815	chr3	30178162	30178163	rs79190537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p24.1	NR	rs79190537-A	0.354135	2E-12				Affymetrix, Illumina [24558453] (imputed)	N
815	chr3	30181399	30181399	rs56388355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p24.1		rs56388355-AG	NR	1E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
815	chr3	30181399	30181399	rs56388355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p24.1		rs56388355-AG	NR	7E-11		0.0135	[0.0094-0.0176] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
815	chr3	30181399	30181399	rs56388355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p24.1	AC137674.2	rs56388355-AG	0.40279	4E-10		0.014768682	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
815	chr3	30181399	30181399	rs56388355	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p24.1	AC137674.2	rs56388355-AG	0.402766	2E-11		0.015755853	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
815	chr3	30181399	30181399	rs56388355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p24.1	NR	rs56388355-I	0.402696	3E-13		0.015997	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
815	chr3	30181399	30181399	rs56388355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p24.1	NR	rs56388355-I	0.402673	2E-14		0.016695	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
815	chr3	30197752	30197753	rs12636518	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p24.1		rs12636518-?	NR	1E-9				NR [~ 8900000] (imputed)	N
815	chr3	30199215	30199216	rs12635066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p24.1	NR	rs12635066-A	0.341065	3E-11		0.013323	[0.0094-0.0173] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
815	chr3	30221062	30221063	rs11129387	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	3p24.1		rs11129387-A	0.364	4E-6		0.5		Illumina [5411261] (imputed)	N
815	chr3	30251855	30251856	rs116511917	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	3p24.1		rs116511917-T	NR	2E-6		4.2754	[2.56-5.99] unit increase	Illumina [NR] (imputed)	N
816	chr3	30284319	30284320	rs9818220	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p24.1	intergenic	rs9818220-T	0.7293	6E-11		0.2034	[0.14-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
816	chr3	30299264	30299265	rs7428377	32757270	Ruiz-Pinto S	2020-08-05	Clin Pharmacol Ther	Regulatory CDH4 genetic variants associate with risk to develop capecitabine-induced hand-foot syndrome.	Capecitabine-induced hand-foot syndrome in breast or colorectal cancer	88 cases, 78 controls	24 cases, 61 controls	3p24.1	NR	rs7428377-?	0.09	3E-6		2.47	[1.61-3.78]	Illumina [520052]	N
816	chr3	30300314	30300315	rs2888238	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3p24.1	RBMS3	rs2888238-A	0.1794	5E-6	(EA)			Illumina [4404269] (imputed)	N
816	chr3	30304205	30304206	rs6797774	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p24.1	NR	rs6797774-?	NR	3E-8		1.0519	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
816	chr3	30346967	30346968	rs10510634	17903298	Meigs JB	2007-09-19	BMC Med Genet	Genome-wide association with diabetes-related traits in the Framingham Heart Study.	Fasting plasma glucose	1,027 individuals	NA	3p24.1	intergenic	rs10510634-?	NR	5E-6	(tFPG)			Affymetrix [70897]	N
816	chr3	30372052	30372053	rs7634533	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	3p24.1	RBMS3	rs7634533-?	NR	5E-6				Affymetrix, Illumina [~ 1400000] (imputed)	N
816	chr3	30405935	30405936	rs12638085	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p24.1	TGFBR2	rs12638085-A	0.3504	8E-16		0.2132	[0.16-0.27] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
817	chr3	30422562	30422563	rs56401299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p24.1		rs56401299-?	NR	2E-8				NR [~ 8900000] (imputed)	N
817	chr3	30443868	30443869	rs7653262	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Salty taste perception in obesity with metabolic syndrome	378 individuals	NA	3p24.1	LOC101927995	rs7653262-G	0.405	2E-6		0.516	[0.3-0.73] unit decrease	Illumina [622468]	N
817	chr3	30462402	30462403	rs7640543	22683712	Freilinger T	2012-06-10	Nat Genet	Genome-wide association analysis identifies susceptibility loci for migraine without aura.	Migraine	2,326 European ancestry cases, 4,580 European ancestry controls	2,508 European ancestry cases, 2,652 European ancestry controls	3p24.1	TGFBR2	rs7640543-A	0.32	1E-9		1.19	[1.13-1.26]	Illumina [1246388] (imputed)	N
817	chr3	30480084	30480085	rs6790925	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	3p24.1	TGFBR2	rs6790925-T	0.38	2E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [~ 2300000] (imputed)	N
817	chr3	30480558	30480559	rs6791480	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	3p24.1	TGFBR2	rs6791480-T	0.31	8E-9		1.04	[1.03-1.06]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
817	chr3	30495331	30495332	rs9862857	25944848	Athanasiu L	2015-05-05	J Psychopharmacol	Genome-wide association study identifies common variants associated with pharmacokinetics of psychotropic drugs.	Pharmacokinetics of olanzapine in severe mental disorder (concentration dose ratio)	Up to 290 European ancestry cases	NA	3p24.1	intergenic	rs9862857-C	NR	6E-8		0.7386	[NR] unit decrease	Affymetrix [686595]	N
817	chr3	30518432	30518433	rs62244773	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p24.1	NR	rs62244773-T	0.302963	8E-16		0.0270583	[0.02-0.034] unit decrease	NR [19129689] (imputed)	N
818	chr3	30545946	30545947	rs72847487	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3p24.1	intergenic	rs72847487-T	0.095	7E-17		0.33	[0.26-0.41] unit decrease	Affymetrix [339439]	N
818	chr3	30588305	30588306	rs79134551	32603185	Ibi D	2020-06-30	Circ Genom Precis Med	Genome-wide Association Study of the Postprandial Triglyceride Response Yields Common Genetic Variation in Hepatic Lipase (LIPC).	Postprandial triglyceride response	5,630 individuals	NA	3p24.1	TGFBR2	rs79134551-A	0.07	2E-6		0.22	[0.12-0.32] unit increase	Illumina [NR] (imputed)	N
818	chr3	30591943	30591944	rs4955158	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p24.1	TGFBR2, GADL1	rs4955158-T	NR	5E-6	(sleep duration, weekdays)	0.6493	[0.37-0.93] unit decrease	Affymetrix [7141204] (imputed)	N
818	chr3	30663913	30663914	rs6773330	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	3p24.1	NR	rs6773330-G		9E-6		0.1814	[0.09-0.273] SD units increase	NR [10700000] (imputed)	N
818	chr3	30669402	30669403	rs76495833	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p24.1	TGFBR2	rs76495833-C	0.04	8E-8	(EA)	0.4484	[0.29-0.61] unit increase	Illumina [~ 9000000] (imputed)	N
818	chr3	30669402	30669403	rs76495833	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p24.1	TGFBR2	rs76495833-C	0.04	1E-6		0.3689	[0.22-0.52] unit increase	Illumina [~ 9000000] (imputed)	N
819	chr3	30682938	30682939	rs12493607	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p24.1		rs12493607-C	NR	3E-16		1.05	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
819	chr3	30682938	30682939	rs12493607	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	TGFBR2	rs12493607-C	0.34	7E-14	(EA)	1.05	[1.03-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
819	chr3	30682938	30682939	rs12493607	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	3p24.1	NR	rs12493607-C	0.34	7E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 14000000] (imputed)	N
819	chr3	30682938	30682939	rs12493607	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	3p24.1	NR	rs12493607-C	0.34	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 11600000] (imputed)	N
819	chr3	30682938	30682939	rs12493607	23535729	Michailidou K	2013-04-01	Nat Genet	Large-scale genotyping identifies 41 new loci associated with breast cancer risk.	Breast cancer	10,052 European ancestry cases, 12,575 European ancestry controls	45,290 European ancestry cases, 41,880 European ancestry controls	3p24.1	TGFBR2	rs12493607-C	0.35	2E-8		1.06	[1.03-1.08]	Affymetrix, Illumina [~ 2600000] (imputed)	N
819	chr3	30684906	30684907	rs17838698	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p24.1	NR	rs17838698-T	0.2978	2E-14	(EA)	0.0517	[0.039-0.065] unit increase	Illumina [~ 11800000] (imputed)	N
819	chr3	30710242	30710243	rs3773643	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	3p24.1	TGFBR2	rs3773643-?	NR	2E-7	(MAPLTA)			Affymetrix [70897]	N
819	chr3	30718531	30718532	rs3773651	25117820	Schneider BP	2014-08-12	Br J Cancer	Genetic variant predicts bevacizumab-induced hypertension in ECOG-5103 and ECOG-2100.	Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)	255 European ancestry cases, 387 European ancestry controls		3p24.1	TGFBR2	rs3773651-?	NR	7E-6		2.15	[NR]	Illumina [up to 810372] (imputed)	N
819	chr3	30734899	30734900	rs6550008	30767168	Shin JH	2019-02-14	Genes Genomics	Genetic risk score combining six genetic variants associated with the cellular NRF2 expression levels correlates with Type 2 diabetes in the human population.	Cellular nuclear factor (erythroid-derived 2)-like 2 levels	74 East Asian ancestry lymphoblastoid cell lines	NA	3p24.1	TGFBR2	rs6550008-T	0.99	2E-7		1.64	NR unit decrease	Affymetrix [352228] (imputed)	N
819	chr3	30736168	30736169	rs731465	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p24.1		rs731465-?	NR	1E-15				NR [~ 8900000] (imputed)	N
819	chr3	30736572	30736573	rs7633119	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p24.1	TGFBR2	rs7633119-T	0.665791	1E-13		0.0145184	[0.011-0.018] unit increase	NR [13737936] (imputed)	N
819	chr3	30741505	30741506	rs1461070	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		3p24.1	NR	rs1461070-A	0.017	2E-6		2.16	[1.57-2.96]	Illumina [~ 8000000] (imputed)	N
819	chr3	30746254	30746255	rs905456	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3p24.1	NR	rs905456-A	0.4527	1E-6		0.0171	[0.01-0.024] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
819	chr3	30749964	30749965	rs6779998	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p24.1	TGFBR2	rs6779998-A	0.5174	1E-10		0.0017	[0.0011-0.0023] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
819	chr3	30750403	30750404	rs6780429	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p24.1	TGFBR2	rs6780429-A	0.5331	2E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
819	chr3	30753572	30753573	rs6804368	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3p24.1	GADL1	rs6804368-A	0.57	8E-21	(X-12244--N-acetylcarnosine)	0.022	[0.018-0.026] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
819	chr3	30768667	30768667	rs147693330	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3p24.1	GADL1	rs147693330-T	0.654596	4E-18	(N-acetylcarnosine)	0.215	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
819	chr3	30775778	30775779	rs17026459	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p24.1	TGFBR2	rs17026459-?	NR	6E-6	(SM 22:0)	0.82435805	[0.47-1.18] unit increase	Affymetrix [at least 2500000] (imputed)	N
819	chr3	30777943	30777944	rs7648352	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p24.1		rs7648352-?	NR	4E-8				NR [~ 8900000] (imputed)	N
820	chr3	30923243	30923244	rs113663979	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on CD20- B cell	3,648 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p23		rs113663979-G	0.09247	2E-9		0.2562	[0.17-0.34] unit decrease	Illumina [18233862] (imputed)	N
821	chr3	31040502	31040503	rs1506203	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	3p23	GADL1	rs1506203-G	0.849	8E-6		0.083	[0.048-0.118] unit decrease	Illumina [6150213] (imputed)	N
822	chr3	31113391	31113392	rs74712413	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls	NA	3p23	NR	rs74712413-A	0.02812	1E-5		5.07	[2.47-10.4]	Illumina [3403929] (imputed)	N
822	chr3	31113391	31113392	rs74712413	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	3p23	NR	rs74712413-A	NR	1E-5		5.069	NR	Illumina [up to 4495750] (imputed)	N
822	chr3	31176874	31176875	rs1625526	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	up to 12,543 European ancestry cases, up to 66,458 European ancestry controls	3p23	NR	rs1625526-A	0.7496	5E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [at least 11579618] (imputed)	N
822	chr3	31188132	31188133	rs145933237	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	14,007 European ancestry male cases, 107,048 European ancestry male controls	NA	3p23	hsa-mir-466	rs145933237-C	0.02	2E-8		0.2688	unit increase	Affymetrix, Illumina [9464541] (imputed)	N
823	chr3	31220798	31220799	rs6764127	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p23	NR	rs6764127-C	0.208	2E-6	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
823	chr3	31296042	31296043	rs73056108	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	3p23	MIR466-STT3B	rs73056108-A	0.091	5E-6		1.26	[1.16-1.36]	Affymetrix, Illumina [8000000] (imputed)	N
823	chr3	31298928	31298929	rs79004933	32918390	Lin GY	2020-09-12	Ann Clin Transl Neurol	Association of genetic variants in migraineurs with and without restless legs syndrome.	Restless legs syndrome in migraine	53 Taiwanese ancestry cases, 180 Taiwanese ancestry controls	NA	3p23	intergenic	rs79004933-T	0.04469	3E-7		5.281	NR	Affymetrix [710525]	N
824	chr3	31445579	31445580	rs17027625	20041166	Fellay J	2009-12-24	PLoS Genet	Common genetic variation and the control of HIV-1 in humans.	HIV-1 control	2,362 European ancestry cases	NA	3p23	intergenic	rs17027625-?	NR	4E-6	(progression)			Illumina [NR]	N
825	chr3	31501118	31501119	rs12630354	33607655	Imamura M	2021-02-19	Hum Mol Genet	Genome-Wide Association Studies Identify Two Novel Loci Conferring Susceptibility to Diabetic Retinopathy in Japanese Patients with Type 2 Diabetes.	Diabetic retinopathy in type 2 diabetes	5,532 Japanese ancestry cases, 5,565 Japanese ancestry controls	3,010 Japanese ancestry cases, 1,562 Japanese ancestry controls	3p23	STT3B, GADL1, OSBPL10, ZNF860, CMTM8, CNOT10	rs12630354-T	0.411	7E-10		1.16	[1.11-1.22]	Illumina [5790508] (imputed)	N
825	chr3	31502959	31502960	rs1353327	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Urinary uric acid to urinary creatinine ratio	768 Hispanic children from 260 families		3p23	intergenic	rs1353327-A	0.1	7E-7		0.49	[0.29-0.69] unit decrease	Illumina [899892]	N
825	chr3	31509234	31509235	rs9874872	28095793	Chittoor G	2017-01-17	BMC Med Genet	Genetic variation underlying renal uric acid excretion in Hispanic children: the Viva La Familia Study.	Urinary uric acid to urinary creatinine ratio	768 Hispanic children from 260 families		3p23	intergenic	rs9874872-A	0.18	2E-7		0.38	[0.24-0.52] unit decrease	Illumina [899892]	N
825	chr3	31528127	31528128	rs73058028	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3p23	STT3B	rs73058028-C	0.6443	2E-8		0.0183	[0.012-0.025] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
825	chr3	31528127	31528128	rs73058028	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3p23	STT3B	rs73058028-C	0.6413	7E-6		0.01791	[0.01-0.026] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
825	chr3	31538325	31538326	rs59665378	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	3,830 European and unknown ancestry modified Rankin score 0-2 cases, 2,335 European and unknown ancestry modified Rankin score 3-6 cases	NA	3p23	STT3B	rs59665378-C	0.53	3E-6	(adjusted for severity)	1.2658228	[1.17-1.36]	Affymetrix, Illumina [~ 8500000] (imputed)	N
825	chr3	31541299	31541300	rs12485487	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p23	NR	rs12485487-?		5E-6				Illumina [4322238] (imputed)	N
826	chr3	31661753	31661754	rs9859349	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD62L- monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p23		rs9859349-A	0.1208	5E-8		0.227	[0.15-0.31] unit increase	Illumina [18132558] (imputed)	N
826	chr3	31717018	31717019	rs1107643	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p23	NR	rs1107643-?	NR	4E-30				Affymetrix [NR]	N
827	chr3	31726124	31726125	rs17027964	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p23	NR	rs17027964-G	0.23	6E-9	(FGG)	0.1439	NR unit increase	Illumina [1671387] (imputed)	N
827	chr3	31795569	31795570	rs1902341	20610895	Koriyama H	2010-07-02	J Atheroscler Thromb	Identification of evidence suggestive of an association with peripheral arterial disease at the OSBPL10 locus by genome-wide investigation in the Japanese population.	Peripheral artery disease	195 Japanese ancestry cases, 1,358 Japanese ancestry controls	699 Japanese ancestry cases, 1,540 Japanese ancestry controls	3p23	OSBPL10	rs1902341-G	0.397	5E-7		1.31	[1.18-1.46]	Perlegen [222285]	N
827	chr3	31797200	31797201	rs6550067	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	3p23	OSBPL10	rs6550067-?	NR	8E-10		0.006038	[0.0018-0.0103] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
828	chr3	31920352	31920353	rs74388374	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	3p23	NR	rs74388374-G	0.1156	5E-7		24.0	[23.65-24.35]	Illumina [10000612] (imputed)	N
828	chr3	31930422	31930428	rs541130915	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Acute glomerulonephritis	274 European ancestry cases, 475,255 European ancestry controls, 443 East Asian ancestry cases, 174,345 East Asian ancestry controls	NA	3p23		rs541130915-A	NR	3E-8		2.1691	[1.4-2.94] unit increase	Affymetrix, Illumina [25844004] (imputed)	N
828	chr3	31967966	31967967	rs6810295	24281739	Boardman JD	2013-11-27	Demography	Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index.	Body mass index (education interaction)	816 non-college graduate individuals, 1,061 college graduate individuals	NA		NR	rs6810295-?	NR	7E-6				Affymetrix [260402]	N
829	chr3	31981766	31981767	rs12630931	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	3p23	ZNF860, STT3B, OSBPL10, GPD1L, CMTM8	rs12630931-?	0.3	6E-6	(PD2)	1.89	[NR]	Illumina [~ 1400000] (imputed)	N
829	chr3	32058558	32058559	rs10510653	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p22.3	RPL21P40	rs10510653-A	NR	7E-7		1.068	[1.04-1.09]	Illumina [6627481] (imputed)	N
829	chr3	32058558	32058559	rs10510653	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p22.3	GPD1L, ZNF860	rs10510653-A	NR	3E-8		1.074	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
829	chr3	32062640	32062641	rs4955124	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p22.3	NR	rs4955124-T	NR	8E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
829	chr3	32063448	32063449	rs59721702	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p22.3	NR	rs59721702-?	NR	9E-9		1.07616	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
830	chr3	32130941	32130942	rs2341419	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p22.3	NR	rs2341419-T	0.091	9E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
830	chr3	32240118	32240119	rs9825310	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	3p22.3	GPD1L	rs9825310-?	NR	8E-6		1.25	[1.14-1.38]	Illumina [463044]	N
831	chr3	32248961	32248962	rs4955138	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	3p22.3	NR	rs4955138-G	NR	6E-6		1.65	[1.33-2.05]	Illumina [510856]	N
831	chr3	32262433	32262434	rs145972737	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Gynoid lean mass	2,294 White British ancestry female individuals, 2,109 White British ancestry male individuals	NA	3p22.3		rs145972737-A	NR	3E-8		510.27	g increase	NR [6137607] (imputed)	N
831	chr3	32262433	32262434	rs145972737	34239500	Livingstone KM	2021-06-22	Front Endocrinol (Lausanne)	Discovery Genome-Wide Association Study of Body Composition in 4,386 Adults From the UK Biobank's Pilot Imaging Enhancement Study.	Gynoid lean mass	2,109 White British ancestry male individuals	NA	3p22.3		rs145972737-A	NR	5E-9		910.02	g increase	NR [6137607] (imputed)	N
831	chr3	32264363	32264364	rs4955263	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3p22.3	NR	rs4955263-C	NR	9E-6	(random effect)	1.12	NR	NR [6904914] (imputed)	N
831	chr3	32264990	32264991	rs4376071	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p22.3	NR	rs4376071-C	0.313983692931112	8E-6	(IGP16)	0.1605	[0.09-0.231] unit decrease	Illumina [~ 2500000] (imputed)	N
831	chr3	32329496	32329497	rs4380451	18711365	Ferreira MA	2008-08-17	Nat Genet	Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.	Bipolar disorder	4,387 European ancestry cases, 6,209 European ancestry controls	NA	3p22.3	NR	rs4380451-?	0.73	4E-6		1.18	[NR]	Affymetrix [1769948] (imputed)	N
831	chr3	32347703	32347704	rs6765866	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	3p22.3	CMTM8	rs6765866-G	7.0E-4	2E-8		0.09250363	[0.06-0.125] m increase	Illumina [24111857] (imputed)	N
831	chr3	32347823	32347824	rs4627791	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	3p22.3	NR	rs4627791-?	NR	2E-6	(addtive)			Affymetrix [NR]	N
832	chr3	32378092	32378093	rs17029231	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	CMTM7	rs17029231-?	NR	4E-6	(allantoin)	0.22915816	[0.13-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
832	chr3	32378270	32378271	rs6776297	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 viral setpoint	496 African ancestry cases	NA	3p22.3	CMTM8	rs6776297-?	NR	5E-6				Illumina [990115]	N
832	chr3	32408915	32408916	rs2278540	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary magnesium excretion	6,462 European ancestry individuals	NA	3p22.3	CMTM8	rs2278540-A	0.65	1E-6		3.65	NR mg decrease	NR [NR] (imputed)	N
832	chr3	32426610	32426611	rs6801981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p22.3		rs6801981-?	NR	7E-8				NR [~ 8900000] (imputed)	N
832	chr3	32442672	32442673	rs347133	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	609 European ancestry male cases, 1,666 European ancestry male controls	NA	3p22.3	CMTM7	rs347133-G	0.26	4E-6		1.4492754	[1.23-1.69]	Affymetrix, Illumina [up to 7729175] (imputed)	N
832	chr3	32451329	32451330	rs188198692	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	3p22.3	CMTM7	rs188198692-C	0.0208	3E-6		2.704	[1.778-4.114]	Affymetrix, Illumina [14074516] (imputed)	N
832	chr3	32455766	32455767	rs617119	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	3p22.3	CMTM7	rs617119-C	0.4704	1E-14		0.09	NR SD units decrease	Illumina [21568490] (imputed)	N
832	chr3	32463160	32463161	rs17029445	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.3	NR	rs17029445-?	NR	3E-8				Affymetrix [NR]	N
832	chr3	32488533	32488534	rs12638540	27149122	Smith JG	2016-05-05	PLoS Genet	Discovery of Genetic Variation on Chromosome 5q22 Associated with Mortality in Heart Failure.	Mortality in heart failure	1798 European ancestry cases, 1030 European ancestry controls	889 European ancestry cases, 981 European ancestry controls	3p22.3	Intergenic	rs12638540-G	0.04	3E-6		1.35	[1.19-1.54]	Affymetrix, Illumina [2500000] (imputed)	N
832	chr3	32488533	32488534	rs12638540	20400778	Morrison AC	2010-04-17	Circ Cardiovasc Genet	Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium.	Mortality in heart failure	1,645 European ancestry cases, 881 European ancestry controls, 281 African ancestry cases, 185 African ancestry controls	NA	3p22.3	CMTM7	rs12638540-G	0.043	3E-7	(EA)	1.53	[1.01-2.31]	Affymetrix [up to 2366858] (imputed)	N
832	chr3	32499726	32499727	rs342738	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	3p22.3	NR	rs342738-?	NR	5E-6		0.0556	[0.032-0.08] unit increase	Illumina [at least 560000] (imputed)	N
833	chr3	32526152	32526153	rs367841	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		3p22.3	CMTM6	rs367841-?		5E-6				Affymetrix [7000000] (imputed)	N
833	chr3	32533009	32533010	rs7640978	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p22.3	CMTM6	rs7640978-T	0.1604	2E-16		0.033	[0.025-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
833	chr3	32533009	32533010	rs7640978	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p22.3	CMTM6	rs7640978-T	0.09	1E-8		0.039	[NR] unit decrease	NR [NR] (imputed)	N
833	chr3	32533009	32533010	rs7640978	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p22.3	CMTM6	rs7640978-T	0.09	2E-8		0.038	[NR] unit decrease	NR [NR] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05616	2E-8		0.3044	[0.2-0.41] unit decrease	Illumina [18238287] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD- CD27- B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	6E-11		0.3526	[0.25-0.46] unit decrease	Illumina [18238311] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on unswitched memory B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05603	8E-44		0.7465	[0.64-0.85] unit increase	Illumina [18238284] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on switched memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	1E-38		0.6995	[0.6-0.8] unit increase	Illumina [18238311] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on memory B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	1E-35		0.6708	[0.57-0.78] unit increase	Illumina [18238311] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	3E-35		0.6579	[0.55-0.76] unit increase	Illumina [18238311] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD- CD38- B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	3E-29		0.6071	[0.5-0.71] unit increase	Illumina [18238311] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on IgD+ CD24+ B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05603	2E-43		0.7463	[0.64-0.85] unit increase	Illumina [18238284] (imputed)	N
833	chr3	32533245	32533246	rs35574803	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on CD24+ CD27+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.3		rs35574803-C	0.05615	4E-46		0.7589	[0.66-0.86] unit increase	Illumina [18238311] (imputed)	N
833	chr3	32535381	32535382	rs9834932	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3p22.3	CMTM6	rs9834932-A	0.911172	1E-18		0.0323458	[0.025-0.04] unit increase	Affymetrix [NR] (imputed)	N
833	chr3	32535381	32535382	rs9834932	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3p22.3	CMTM6	rs9834932-A	0.911146	3E-18		0.0318788	[0.025-0.039] unit increase	Affymetrix [NR] (imputed)	N
833	chr3	32538246	32538247	rs3773777	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	3p22.3	CMTM6	rs3773777-T	0.0937	4E-8	(Trans-ethnic initial)	0.0394	[0.026-0.053] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
833	chr3	32538246	32538247	rs3773777	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	3p22.3	CMTM6	rs3773777-T	0.0937	7E-8	(Trans-ethnic initial)	0.0402	[0.026-0.054] unit decrease (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
833	chr3	32541325	32541328	rs150605723	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3p22.3	CMTM6	rs150605723-?	NR	2E-19		0.0406	[0.033-0.048] unit decrease	Affymetrix [5701386] (imputed)	N
833	chr3	32541328	32541329	rs67510214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3p22.3		rs67510214-T	NR	6E-15		0.0292	[0.022-0.036] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
833	chr3	32541328	32541329	rs67510214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3p22.3		rs67510214-T	NR	9E-18		0.0339	[0.026-0.042] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
833	chr3	32541552	32541553	rs17029617	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p22.3	CMTM6	rs17029617-A	0.1606	4E-16		0.0331	[0.025-0.041] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
833	chr3	32568631	32568632	rs62252794	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Low density lipoprotein cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3p22.3	DYNC1LI1	rs62252794-?		3E-8		0.037	[0.024-0.05] unit increase	Illumina [31500000] (imputed)	N
833	chr3	32569095	32569096	rs6782149	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	3p22.3	DYNC1LI1	rs6782149-T	0.316	3E-6		0.504	[0.3-0.71] unit increase	Illumina [622468]	N
833	chr3	32578504	32578505	rs2303857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p22.3	NR	rs2303857-C	NR	2E-18		0.0386	[0.03-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
833	chr3	32578504	32578505	rs2303857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3p22.3	NR	rs2303857-C	NR	5E-21		0.0414	[0.033-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
833	chr3	32578504	32578505	rs2303857	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3p22.3	NR	rs2303857-C	NR	2E-18		0.0385	[0.03-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
833	chr3	32598945	32598946	rs140403544	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p22.3	DYNC1LI1	rs140403544-A	0.0140158986870577	2E-6	(G_Ruminococcus_HB)	1.3929	[0.82-1.96] unit decrease	Illumina [7711310] (imputed)	N
834	chr3	32652183	32652184	rs62250779	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Varicose veins	2,483 European ancestry cases, 54,154 European ancestry controls	NA	3p22.3		rs62250779-A	0.0725675	2E-8		3.61		Affymetrix [12017028] (imputed)	N
834	chr3	32696508	32696509	rs146512140	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p22.3	CNOT10	rs146512140-A	0.0253539598168996	3E-6	(G_Ruminococcus_HB)	1.12874	[0.65-1.6] unit decrease	Illumina [7711310] (imputed)	N
834	chr3	32713538	32713539	rs146580188	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p22.3	CNOT10	rs146580188-C	NR	9E-6		0.36351025	[0.19-0.54] unit decrease	Illumina [> 6200000] (imputed)	N
835	chr3	32835959	32835960	rs11129533	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	TRIM71	rs11129533-?	NR	7E-6	(thyroxine)	0.18960705	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
835	chr3	32842100	32842101	rs9845475	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	3p22.3	intergenic	rs9845475-G	NR	4E-6	(later onset)			Perlegen [429981]	N
835	chr3	32878681	32878682	rs34010125	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3p22.3	TRIM71	rs34010125-T	0.68	3E-10		0.00599	[0.0041-0.0079] unit increase	Affymetrix [at least 8002429] (imputed)	N
835	chr3	32879662	32879663	rs9832642	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	3p22.3	NR	rs9832642-G	NR	2E-6		0.01367	[0.0081-0.0193] unit decrease	Illumina [541614]	N
835	chr3	32879822	32879823	rs56131903	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3p22.3	TRIM71	rs56131903-A	0.68	6E-14		0.0069	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
836	chr3	32929114	32929115	rs9310995	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p22.3	TRIM71	rs9310995-T	0.55679	5E-19		0.0165522	[0.013-0.02] unit decrease	NR [13737936] (imputed)	N
836	chr3	32929114	32929115	rs9310995	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3p22.3	TRIM71	rs9310995-T	NR	4E-6	(FEV1)	0.023	[0.013-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
836	chr3	32935514	32935515	rs62253764	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p22.3		rs62253764-C	0.42	2E-9		5.99	z score increase	Affymetrix [9061022] (imputed)	N
836	chr3	32935514	32935515	rs62253764	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p22.3		rs62253764-?	NR	2E-22				NR [~ 8900000] (imputed)	N
836	chr3	32937595	32937596	rs4909017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p22.3		rs4909017-?	NR	2E-20				NR [~ 8900000] (imputed)	N
836	chr3	32937595	32937596	rs4909017	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.3		rs4909017-?	NR	1E-16		0.0170336	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
836	chr3	32962050	32962051	rs11919880	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p22.3		rs11919880-G	0.43	4E-12		6.95	z score increase	Affymetrix [9061022] (imputed)	N
836	chr3	32962050	32962051	rs11919880	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p22.3	NR	rs11919880-G	0.4407	7E-10				NR [9056863] (imputed)	N
836	chr3	32962050	32962051	rs11919880	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p22.3	TRIM71	rs11919880-A	NR	8E-10		1.0603	NR	Affymetrix, Illumina [8278136] (imputed)	N
836	chr3	32962050	32962051	rs11919880	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	3p22.3	intergenic	rs11919880-G	0.313	6E-6	(AA)	0.509	unit decrease	Illumina [at least 5086170] (imputed)	N
836	chr3	32962050	32962051	rs11919880	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (revised social anhedonia scale)	4,025 Finnish ancestry individuals	NA	3p22.3	CCR4	rs11919880-?		7E-7				Illumina [~ 9600000] (imputed)	N
836	chr3	32962050	32962051	rs11919880	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (revised physical anhedonia scale and revised social anhedonia scale)	3,820 Finnish ancestry individuals	NA	3p22.3	CCR4	rs11919880-?		4E-6				Illumina [~ 9600000] (imputed)	N
836	chr3	32962050	32962051	rs11919880	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (perceptual aberration scale and revised social anhedonia scale)	3,868 Finnish ancestry individuals	NA	3p22.3	CCR4	rs11919880-?		6E-7				Illumina [~ 9600000] (imputed)	N
836	chr3	32962050	32962051	rs11919880	28525603	Ortega-Alonso A	2017-05-19	Schizophr Bull	Genome-Wide Association Study of Psychosis Proneness in the Finnish Population.	Psychosis proneness (hypomanic personality scale and revised social anhedonia scale)	3,837 Finnish ancestry individuals	NA	3p22.3	CCR4	rs11919880-?		2E-6				Illumina [~ 9600000] (imputed)	N
836	chr3	33013482	33013483	rs4679081	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3p22.3	CCR4	rs4679081-G	0.55	2E-9		1.07		Illumina [161311]	N
836	chr3	33015468	33015469	rs13314993	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p22.3	CCR4	rs13314993-C	0.46	3E-9		1.13	[1.08-1.17]	Illumina [292387]	N
836	chr3	33020034	33020035	rs4678680	21105107	Clifford RJ	2010-12-01	Hepatology	Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.	Hepatocellular carcinoma	180 Korean ancestry cases, 271 Korean ancestry controls	206 Korean ancestry cases, 416 East Asian ancestry controls,		GLB1	rs4678680-?	0.07	2E-7		2.27	[1.68-3.08]	Affymetrix [658897]	N
836	chr3	33022252	33022253	rs142336883	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p22.3	GLB1	rs142336883-G	0.0153012153761537	4E-6	(G_unclassified_K_Bacteria_HB)	1.02248	[0.59-1.45] unit decrease	Illumina [7711310] (imputed)	N
837	chr3	33037720	33037721	rs4678523	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3p22.3	CCR4, GLB1	rs4678523-C	0.313	2E-7		1.11		Illumina [139553]	N
837	chr3	33044338	33044339	rs9828592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	3p22.3		rs9828592-C	NR	2E-8		0.0522	[0.034-0.07] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
837	chr3	33044338	33044339	rs9828592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3p22.3	NR	rs9828592-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
837	chr3	33044338	33044339	rs9828592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3p22.3	NR	rs9828592-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
837	chr3	33044338	33044339	rs9828592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3p22.3		rs9828592-?	NR	6E-16				NR [~ 8900000] (imputed)	N
837	chr3	33046479	33046480	rs7646283	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3p22.3		rs7646283-C	0.633	3E-18				Affymetrix [10369434] (imputed)	N
837	chr3	33046479	33046480	rs7646283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p22.3	GLB1	rs7646283-T	0.366655	4E-29		0.02590581	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
837	chr3	33046479	33046480	rs7646283	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p22.3	GLB1	rs7646283-T	0.366666	4E-31		0.026675893	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
837	chr3	33046479	33046480	rs7646283	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p22.3	NR	rs7646283-T	0.367733	2E-36		0.025996	[0.022-0.03] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
837	chr3	33046479	33046480	rs7646283	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3p22.3	NR	rs7646283-T	0.3656	4E-12		1.044	[1.032-1.056]	Affymetrix [15688218] (imputed)	N
837	chr3	33046479	33046480	rs7646283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p22.3		rs7646283-?	NR	5E-28				NR [~ 8900000] (imputed)	N
837	chr3	33047282	33047283	rs34064757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p22.3	GLB1	rs34064757-A	0.367	2E-14		0.02874349	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr3	33047282	33047283	rs34064757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3p22.3	GLB1	rs34064757-A	0.3672	3E-15		0.02975007	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
837	chr3	33047282	33047283	rs34064757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p22.3	GLB1	rs34064757-A	0.3671	6E-14		0.02810894	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr3	33047282	33047283	rs34064757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p22.3	GLB1	rs34064757-A	0.3672	6E-14		0.02823211	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr3	33047282	33047283	rs34064757	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p22.3	GLB1	rs34064757-A	0.367	3E-13		0.02730865	[0.02-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
837	chr3	33047661	33047662	rs35570272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	3p22.3		rs35570272-T	NR	2E-10		0.0537	[0.037-0.07] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
837	chr3	33047661	33047662	rs35570272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p22.3		rs35570272-T	NR	6E-29		0.0187	[0.015-0.022] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
837	chr3	33047661	33047662	rs35570272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3p22.3		rs35570272-T	NR	2E-14		0.0542	[0.04-0.068] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
837	chr3	33047661	33047662	rs35570272	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	3p22.3	GLB1	rs35570272-T	0.396276693243391	3E-14		0.050944738	[0.038-0.064] unit increase	Affymetrix [35186738] (imputed)	N
837	chr3	33047661	33047662	rs35570272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.3	NR	rs35570272-T	0.409834	2E-52				Affymetrix, Illumina [19872809] (imputed)	N
837	chr3	33047661	33047662	rs35570272	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p22.3	GLB1	rs35570272-T	0.4	3E-22				NR [> 9500000] (imputed)	N
837	chr3	33047661	33047662	rs35570272	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3p22.3	GLB1	rs35570272-T	0.39590000000000003	2E-21		1.0605001	[1.04777297868662-1.07338199118561]	NR [9572556] (imputed)	N
837	chr3	33047661	33047662	rs35570272	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3p22.3	GLB1, CCR4, TMPPE, CRTAP, TRIM71, SUSD5	rs35570272-T	0.39628	3E-12		1.04604	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
837	chr3	33047661	33047662	rs35570272	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3p22.3	GLB1	rs35570272-T	0.396243	3E-15		1.0522484	[1.04-1.06]	Affymetrix [8274727] (imputed)	N
837	chr3	33047661	33047662	rs35570272	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3p22.3	GLB1	rs35570272-T	0.3954	1E-15				Affymetrix [15688218] (imputed)	N
837	chr3	33047661	33047662	rs35570272	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	3p22.3	GLB1, TRIM71, TMPPE	rs35570272-T	0.396	3E-10		1.1	[1.068-1.133]	Affymetrix [10894596] (imputed)	N
837	chr3	33047661	33047662	rs35570272	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3p22.3	GLB1	rs35570272-T	0.395575	3E-9		0.05510699	[0.037-0.073] unit increase	Affymetrix [7288503] (imputed)	N
837	chr3	33047661	33047662	rs35570272	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3p22.3	GLB1	rs35570272-?	NR	4E-14		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
837	chr3	33047661	33047662	rs35570272	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3p22.3	GLB1	rs35570272-T	NR	3E-20		1.066	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
837	chr3	33053753	33053754	rs13081593	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	3p22.3		rs13081593-T	0.451174	9E-19		0.039617	[0.031-0.048] unit increase	Illumina [13470073] (imputed)	N
837	chr3	33057575	33057576	rs4328758	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p22.3	NR	rs4328758-A	NR	3E-10		0.0225	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
837	chr3	33065338	33065339	rs7613051	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	3p22.3	GLB1	rs7613051-A	0.453	6E-21		1.29	[1.22-1.36]	Illumina [606164]	N
837	chr3	33068054	33068055	rs10154834	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls	NA	3p22.3	GLB1	rs10154834-C	0.494958	1E-9		0.06790519	[0.046-0.09] unit decrease	Affymetrix [7288503] (imputed)	N
837	chr3	33068267	33068268	rs73057087	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3p22.3		rs73057087-?	NR	2E-15				NR [~ 8900000] (imputed)	N
837	chr3	33068726	33068727	rs59706531	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	3p22.3		rs59706531-C	NR	1E-11		0.1629	[0.12-0.21] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
837	chr3	33069090	33069091	rs6776757	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3p22.3	GLB1	rs6776757-G	0.47	3E-10		1.033	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
837	chr3	33083984	33083985	rs4491851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (glucocorticoids)	17,352 European ancestry cases, 188,348 European ancestry controls, 13,102 East Asian ancestry cases, 165,624 East Asian ancestry controls	NA	3p22.3		rs4491851-A	NR	2E-9		0.0598	[0.04-0.079] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
837	chr3	33083984	33083985	rs4491851	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	3p22.3	NR	rs4491851-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
837	chr3	33083984	33083985	rs4491851	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3p22.3	NR	rs4491851-A	0.5336	1E-13		1.0417751	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
837	chr3	33083984	33083985	rs4491851	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	3p22.3	GLB1	rs4491851-?	NR	4E-13		1.05	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
837	chr3	33083984	33083985	rs4491851	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3p22.3	GLB1	rs4491851-A	NR	3E-19		1.063	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
837	chr3	33084910	33084911	rs79497729	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	3p22.3		rs79497729-?	NR	4E-12		1.21	[1.15-1.28]	Illumina [5170515] (imputed)	N
837	chr3	33084910	33084911	rs79497729	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	3p22.3		rs79497729-?	NR	1E-12		1.23	[1.16-1.3]	Illumina [9900441] (imputed)	N
837	chr3	33084910	33084911	rs79497729	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	3p22.3		rs79497729-G	0.446180104	2E-11		1.2465895	[1.169118136-1.329194619]	Illumina [8919992] (imputed)	N
837	chr3	33087199	33087200	rs6780220	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	3p22.3		rs6780220-C	0.530443886	3E-11		0.16698192	[0.12-0.22] unit increase	Illumina [13428180] (imputed)	N
837	chr3	33087394	33087395	rs35480293	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	3p22.3	GLB1	rs35480293-?	NR	4E-12		0.03956	[0.028-0.051] unit increase novel	Illumina [6108953] (imputed)	N
837	chr3	33088784	33088785	rs79337446	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3p22.3	NR	rs79337446-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
837	chr3	33088784	33088785	rs79337446	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3p22.3	CRTAP, GLB1, SUSD5, TMPPE	rs79337446-C	0.930888	5E-9		1.0744816	[1.05-1.1]	Affymetrix [8274727] (imputed)	N
837	chr3	33092627	33092628	rs149944146	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	3p22.3	NR	rs149944146-G	0.624261	1E-26		0.05553	[0.045-0.066] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
837	chr3	33098054	33098055	rs11706136	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p22.3		rs11706136-A	NR	2E-17		0.0174	[0.013-0.021] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
837	chr3	33098054	33098055	rs11706136	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p22.3	GLB1	rs11706136-A	0.69	8E-12		6.83	z-score increase	Affymetrix [4314223] (imputed)	N
837	chr3	33104712	33104713	rs6802807	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.3	NR	rs6802807-?	NR	2E-8				Affymetrix [NR]	N
837	chr3	33146255	33146256	rs4491847	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p22.3	RN7SL296P	rs4491847-T	0.12141	3E-9		0.021151157	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
837	chr3	33160406	33160407	rs4478037	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p22.3	CRTAP	rs4478037-A	0.08	2E-8	(males)	0.29	[0.19-0.39] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
838	chr3	33164650	33164651	rs79761396	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3p22.3	NR	rs79761396-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
838	chr3	33171658	33171659	rs4392367	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p22.3	CRTAP	rs4392367-G	NR	1E-7		1.0701	NR	Affymetrix, Illumina [8278136] (imputed)	N
838	chr3	33174155	33174156	rs1135127	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	3p22.3	CRTAP	rs1135127-?	0.42600000000000005	4E-6		1.1107519	[1.06-1.16]	Affymetrix, Illumina [7701827] (imputed)	N
838	chr3	33186413	33186414	rs78745278	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CRTAP	rs78745278-?	NR	3E-9		2.11699	[NR] unit decrease	Affymetrix [NR] (imputed)	N
838	chr3	33187182	33187183	rs114378448	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	3p22.3	NR	rs114378448-?	NR	3E-7		2.0617	[1.44-2.68] unit increase	Illumina [at least 560000] (imputed)	N
838	chr3	33194989	33194990	rs6810039	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p22.3	SUSD5	rs6810039-A	NR	3E-8		0.0159083	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
838	chr3	33194989	33194990	rs6810039	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p22.3	CRTAP, SUSD5	rs6810039-?		2E-15				Affymetrix, Illumina [NR] (imputed)	N
838	chr3	33195263	33195264	rs75287757	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	3p22.3	SUSD5	rs75287757-T	0.0	1E-15				Illumina [239042]	N
838	chr3	33204308	33204309	rs4482622	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p22.3		rs4482622-C	NR	5E-10		0.0208	[0.014-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
838	chr3	33204538	33204539	rs7635223	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	3p22.3	SUSD5	rs7635223-T	0.151	8E-6		0.025	[0.013-0.037] unit increase	Affymetrix [~ 10446505] (imputed)	N
838	chr3	33261434	33261435	rs4678506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p22.3		rs4678506-?	NR	6E-10				NR [~ 8900000] (imputed)	N
838	chr3	33262076	33262077	rs9829746	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p22.3	NR	rs9829746-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
838	chr3	33262128	33262129	rs9830029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.3		rs9830029-?	NR	6E-21				NR [~ 8900000] (imputed)	N
838	chr3	33263148	33263149	rs77156651	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p22.3	SUSD5	rs77156651-A	0.0537	7E-16		0.0338	[0.026-0.042] unit decrease	Affymetrix [18391927] (imputed)	N
838	chr3	33289629	33289630	rs142515962	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.3		rs142515962-?	NR	7E-14		0.0738704	[0.054-0.094] unit increase	Affymetrix [20259828] (imputed)	N
838	chr3	33289629	33289630	rs142515962	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p22.3	SUSD5	rs142515962-A	0.988125	2E-9		0.0984141	[0.067-0.13] unit increase	NR [17166351] (imputed)	N
839	chr3	33408868	33408869	rs146447986	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p22.3	FBXL2	rs146447986-C	0.992996	6E-20		0.0858988	[0.067-0.104] unit increase	NR [13737936] (imputed)	N
839	chr3	33408868	33408869	rs146447986	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p22.3		rs146447986-?	NR	4E-17				NR [~ 8900000] (imputed)	N
840	chr3	33424752	33424753	rs13078580	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Rostral anterior cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p22.3	FBXL2	rs13078580-?		3E-6				Illumina [4322238] (imputed)	N
840	chr3	33457492	33457493	rs11928797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p22.3		rs11928797-A	NR	2E-13		0.028	[0.021-0.035] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
840	chr3	33457492	33457493	rs11928797	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p22.3	FBXL2	rs11928797-C	0.883562	2E-10		0.00222094	[0.0015-0.0029] unit decrease	Affymetrix [13995440] (imputed)	N
840	chr3	33457492	33457493	rs11928797	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p22.3	NR	rs11928797-C	0.882698	2E-9		0.0200831	[0.013-0.027] unit increase	NR [NR]	N
840	chr3	33467111	33467112	rs61751640	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p22.3	UBP1	rs61751640-A	NR	1E-8		0.0732525	[0.048-0.099] unit increase	Affymetrix [321114] (imputed)	N
840	chr3	33494990	33494991	rs150059308	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.3		rs150059308-?	NR	3E-14		0.0708874	[0.052-0.09] unit increase	Affymetrix [20259828] (imputed)	N
840	chr3	33520695	33520696	rs113664481	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p22.3	RNA5SP128	rs113664481-G	NR	2E-8		0.0443603	[0.029-0.06] unit increase	Affymetrix [321114] (imputed)	N
840	chr3	33520695	33520696	rs113664481	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p22.3	NR	rs113664481-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
841	chr3	33582873	33582874	rs9815692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p22.3		rs9815692-T	NR	6E-18		0.0418	[0.032-0.051] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
841	chr3	33611490	33611491	rs111401421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.3		rs111401421-?	NR	5E-28				NR [~ 8900000] (imputed)	N
841	chr3	33640317	33640318	rs79819185	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CLASP2	rs79819185-?	NR	9E-10	(male)	2.16762	[NR] unit decrease	Affymetrix [NR] (imputed)	N
842	chr3	33773368	33773369	rs72858391	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p22.3	AC112220.1	rs72858391-A	0.0271	1E-14		0.0449	[0.034-0.056] unit increase	Affymetrix [18391927] (imputed)	N
842	chr3	33789063	33789064	rs115836059	31926482	Shen H	2020-01-11	Neuropsychopharmacology	Polygenic prediction and GWAS of depression, PTSD, and suicidal ideation/self-harm in a Peruvian cohort.	Suicidal or self-harm ideation	522 Peruvian cases, 2,882 Peruvian controls	NA	3p22.3	NR	rs115836059-C		5E-6		1.523	[NR]	NR [NR]	N
843	chr3	33841064	33841065	rs9876986	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p22.3		rs9876986-G	0.23	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
843	chr3	33846862	33846863	rs556301564	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Kidney cancer	1,338 European ancestry cases, 410,350 European ancestry controls	NA	3p22.3		rs556301564-A	0.03237	7E-7		1.6479894	NR	Affymetrix [7846216] (imputed)	N
843	chr3	33872786	33872787	rs12631066	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p22.3	NR	rs12631066-C	0.22	5E-9		0.013	[0.0089-0.0171] unit increase	Affymetrix [2446094] (imputed)	N
843	chr3	33872786	33872787	rs12631066	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p22.3	NR	rs12631066-C	0.22	5E-8				Affymetrix [2446094] (imputed)	N
843	chr3	33872786	33872787	rs12631066	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p22.3	NA	rs12631066-C	0.2247	2E-9		0.0124	[0.0083-0.0165] unit increase	NR [~ 27400000] (imputed)	N
844	chr3	33986164	33986165	rs7613581	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	CLASP2	rs7613581-?	NR	5E-6	(CE 18:1)	0.23465529	[0.13-0.34] unit increase	Affymetrix [at least 2500000] (imputed)	N
844	chr3	34013204	34013205	rs7620363	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Non-substance related behavioral disinhibition	7,188 European ancestry individuals	NA	3p22.3	NR	rs7620363-A	0.35	9E-6		1.662	[NR] unit decrease	Illumina [527829]	N
844	chr3	34014291	34014292	rs11129574	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	3p22.3	intergenic	rs11129574-C	0.936	4E-6	(AA)	1.079	unit increase	Illumina [at least 5086170] (imputed)	N
844	chr3	34059328	34059329	rs12715234	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p22.3	intergenic	rs12715234-?	NR	9E-6		0.211	[0.12-0.3] unit decrease	Illumina [at least 13000000] (imputed)	N
845	chr3	34083519	34083520	rs148642995	34014839	Page GP	2021-05-20	J Clin Invest	Multi-ancestry genome-wide association study identifies 27 loci associated with measures of hemolysis following blood storage.	hemolysis of donated blood (osmotic)	Up to 1,046 African Americans individuals	NA	3p22.3	NR	rs148642995-?	NR	1E-8		11.2	unit decrease	NR [14100000] (imputed)	N
845	chr3	34151801	34151802	rs17031323	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	3p22.3	PDCD6IP, ARPP21	rs17031323-?	0.01019	2E-8		9.859	[3.706-26.23]	Affymetrix [547296]	N
845	chr3	34191230	34191231	rs6550253	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	3p22.3	PDCD6IP	rs6550253-A		9E-7	(AA)	2.95	[1.17-7.45]	Affymetrix, Illumina [NR] (imputed)	N
846	chr3	34212165	34212166	rs6781182	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p22.3	PDCD6IP	rs6781182-T	0.29	3E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
846	chr3	34223077	34223078	rs114018984	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p22.3	NR	rs114018984-?	NR	1E-6		5026.7144	NR unit decrease	Illumina [2379855]	N
846	chr3	34241685	34241686	rs2053425	31044621	Rimpela JM	2019-05-02	Blood Press	Genome-wide association study of white-coat effect in hypertensive patients.	White coat effect (clinic diastolic blood pressure minus ambulatory diastolic blood pressure)	206 Finnish ancestry individuals	NA	3p22.3	PDCD6IP	rs2053425-A	0.23	8E-6		2.3	[1.32-3.28] unit increase	Illumina [629414]	N
846	chr3	34255371	34255372	rs6550259	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p22.3	Intergenic	rs6550259-A	0.2811	2E-9	(MTAG)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
846	chr3	34260091	34260092	rs145744974	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p22.3	PDCD6IP	rs145744974-A	0.99	4E-6	(Age 20-60 years)	0.2942	[0.17-0.42] unit increase	Affymetrix, Illumina [up to 17585496] (imputed)	N
846	chr3	34261746	34261747	rs13061194	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	CLASP2	rs13061194-?	NR	1E-6	(UDP glucose; UDP galactose)	0.26880735	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
846	chr3	34271041	34271042	rs1518890	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p22.3		rs1518890-T	0.2542	3E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
846	chr3	34310235	34310236	rs78529895	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	3p22.3	PDCD6IP	rs78529895-G	NR	3E-6		0.425837	[0.25-0.61] unit increase	Illumina [at least 950000] (imputed)	N
846	chr3	34314022	34314023	rs7640172	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.3	NR	rs7640172-?	NR	9E-6				Affymetrix [NR]	N
847	chr3	34400890	34400891	rs146266213	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	3p22.3	NR	rs146266213-T	0.99	1E-6		1.84	[NR]	Affymetrix [87696888] (imputed)	N
847	chr3	34421744	34421745	rs1919621	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p22.3	PDCD6IP	rs1919621-A	0.5283	4E-12		0.013966235	[0.01-0.018] unit increase	Affymetrix [11514654] (imputed)	N
847	chr3	34422169	34422170	rs12487411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p22.3		rs12487411-?	NR	3E-9				NR [~ 8900000] (imputed)	N
847	chr3	34467076	34467077	rs76659101	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	3p22.3	NR	rs76659101-T	0.946	3E-7		0.04921867	[0.03-0.068] unit increase	Affymetrix [up to 6544775] (imputed)	N
848	chr3	34477169	34477170	rs10510659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p22.3		rs10510659-?	NR	4E-8				NR [~ 8900000] (imputed)	N
848	chr3	34481763	34481764	rs116361370	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p22.3	NR	rs116361370-?	NR	5E-7		4383.571	NR unit decrease	Illumina [2379855]	N
848	chr3	34547164	34547165	rs13353396	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	3p22.3		rs13353396-?	NR	3E-7				Illumina [3311160] (imputed)	N
848	chr3	34547164	34547165	rs13353396	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	3p22.3		rs13353396-?	NR	3E-6				Affymetrix, Illumina [3311160] (imputed)	N
848	chr3	34575248	34575249	rs7611151	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs7611151-?	NR	7E-9				NR [NR]	N
848	chr3	34579542	34579543	rs75715841	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs75715841-?	NR	2E-10				NR [NR]	N
848	chr3	34579542	34579543	rs75715841	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs75715841-?	NR	6E-11				NR [NR]	N
848	chr3	34579542	34579543	rs75715841	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs75715841-?	NR	1E-11				NR [NR]	N
848	chr3	34579542	34579543	rs75715841	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs75715841-?	NR	8E-11				NR [NR]	N
848	chr3	34579542	34579543	rs75715841	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p22.3		rs75715841-?	NR	8E-11				NR [NR]	N
848	chr3	34582992	34582993	rs35688236	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	3p22.3	PDCD6IP	rs35688236-A	0.694	2E-8		0.021311838	[0.014-0.029] unit increase	Affymetrix [up to 6544775] (imputed)	N
849	chr3	34608875	34608876	rs1520625	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p22.3		rs1520625-G	0.633	2E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
849	chr3	34653929	34653930	rs116411159	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p22.3	NR	rs116411159-?	NR	5E-7		4383.571	NR unit decrease	Illumina [2379855]	N
849	chr3	34655836	34655837	rs2358597	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels (without 22q.11.2 deletion syndrome)	294 European ancestry cases, 2,976 European ancestry controls, 641 trios	NA	3p22.3		rs2358597-?	NR	4E-6				Illumina [3311160] (imputed)	N
850	chr3	34838690	34838691	rs589491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p22.3	FECHP1	rs589491-A	0.9781	3E-6		0.1137	[0.066-0.161] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
850	chr3	34838690	34838691	rs589491	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p22.3	FECHP1	rs589491-A	0.9781	3E-6		0.1137	[0.066-0.161] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
851	chr3	34865596	34865597	rs559356	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	3p22.3	FECHP1	rs559356-C	0.473	3E-6	(Semantic Fluency)	2.0925	[1.22-2.96] unit increase	Affymetrix [> 371951] (imputed)	N
851	chr3	34879268	34879269	rs55863623	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	3p22.3	intergenic	rs55863623-A	0.027	6E-6		3.08	[1.90-5.01]	Illumina [3905175] (imputed)	N
851	chr3	34925024	34925025	rs73070160	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	3p22.3	FECHP	rs73070160-T	0.14	3E-6		1.24	[NR]	Illumina [7659573] (imputed)	N
851	chr3	34928272	34928273	rs1522976	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	3p22.3	LOC101928135	rs1522976-A	0.0218199	6E-6		0.582261	[0.33-0.83] unit increase	NR [7263501] (imputed)	N
851	chr3	34961679	34961680	rs6809132	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p22.3	FECHP1	rs6809132-C	NR	5E-6	(wake after sleep onset, weekdays)	0.06835	[0.039-0.098] unit increase	Affymetrix [7141204] (imputed)	N
851	chr3	34962668	34962669	rs10514688	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	3p22.3	intergenic	rs10514688-?	NR	6E-6	(CB-PWV)			Affymetrix [70897]	N
851	chr3	34974238	34974239	rs4678493	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p22.3	FECHP1	rs4678493-C	NR	8E-6	(wake after sleep onset)	0.06482	[0.036-0.093] unit decrease	Affymetrix [7141204] (imputed)	N
851	chr3	34980351	34980352	rs6789440	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p22.3	NR	rs6789440-A	0.1495	3E-6	(EA)	0.0403	[0.023-0.057] unit increase	Illumina [~ 11800000] (imputed)	N
852	chr3	35028298	35028299	rs9818707	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p22.3	Intergenic	rs9818707-T	0.7613	3E-8	(MTAG)	0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
852	chr3	35038081	35038082	rs187099436	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	3p22.3	LOC101928135	rs187099436-A	0.0194986	2E-6		0.649916	[0.38-0.92] unit increase	NR [7263501] (imputed)	N
852	chr3	35117775	35117776	rs11921432	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.3	NR	rs11921432-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
853	chr3	35142510	35142511	rs11129640	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Entorhinal cortical thickness	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	3p22.3	ARPP-21	rs11129640-?	NR	6E-8		0.123	[NR] unit decrease	Illumina [478011]	N
853	chr3	35195310	35195311	rs80082536	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p22.3	ARPP21	rs80082536-A	0.87952	1E-9		0.0128944	[0.0087-0.0171] unit decrease	Affymetrix [12370749]	N
853	chr3	35197522	35197523	rs190051860	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p22.3	KRT8P18	rs190051860-A	0.0023	1E-6		0.4037	[0.24-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
853	chr3	35197522	35197523	rs190051860	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p22.3	KRT8P18	rs190051860-A	0.0023	1E-6		0.4037	[0.24-0.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
853	chr3	35236520	35236521	rs201271503	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p22.3	NR	rs201271503-TG	NR	3E-6		0.1524	[0.089-0.216] SD units decrease	NR [10700000] (imputed)	N
853	chr3	35240631	35240632	rs114306779	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	3p22.3	NR	rs114306779-T	0.0454641	4E-8		5.51	z score increase	NR [10847151] (imputed)	N
853	chr3	35248520	35248521	rs142566675	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		3p22.3	LOC101928135	rs142566675-A	NR	2E-6		0.077	[0.046-0.108] dioptres increase	NR [5901671] (imputed)	N
855	chr3	35439992	35439993	rs1916257	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.3	NR	rs1916257-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
856	chr3	35526724	35526729	rs150338049	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	3p22.3	ARPP21, LOC101928135, MIR128-2	rs150338049-A	0.092	9E-7		0.11	[0.065-0.155] unit increase	Illumina [10000000] (imputed)	N
856	chr3	35527408	35527409	rs1523048	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p22.3	NR	rs1523048-T	0.388668	3E-9		0.038360424	[0.026-0.051] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
856	chr3	35527408	35527409	rs1523048	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p22.3	Intergenic	rs1523048-T	0.3618	2E-9		0.0178	[0.012-0.024] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
856	chr3	35528165	35528166	rs13062354	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p22.3	ARPP21	rs13062354-A	NR	3E-8		5.537	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
856	chr3	35531549	35531550	rs12635118	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p22.3	NR	rs12635118-G	0.377610254384661	1E-8		0.010947717	[0.0072-0.0147] unit increase	NR [NR]	N
856	chr3	35537332	35537333	rs1523041	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p22.3	NR	rs1523041-C	NR	4E-8		5.504	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
856	chr3	35538451	35538452	rs1589652	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p22.3	NR	rs1589652-A	NR	6E-10		6.195	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
856	chr3	35552226	35552227	rs17033321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.3	NR	rs17033321-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
856	chr3	35635144	35635145	rs10490869	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p22.3	NA	rs10490869-A	0.7964	9E-17		0.0183	[0.014-0.023] unit decrease	NR [~ 27400000] (imputed)	N
856	chr3	35636708	35636709	rs11129657	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p22.3	NR	rs11129657-T	0.7925	2E-11		0.0147	[0.01-0.019] unit decrease	NR [~ 27400000] (imputed)	N
856	chr3	35639825	35639826	rs17033506	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3p22.3	intergenic	rs17033506-?	NR	4E-7				Affymetrix [786195]	N
856	chr3	35644566	35644566	rs34461418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3p22.3		rs34461418-GTGTT	NR	6E-9		0.0147	[0.0098-0.0196] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
856	chr3	35644566	35644566	rs34461418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p22.3		rs34461418-GTGTT	NR	2E-10		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
857	chr3	35667056	35667057	rs13062093	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p22.3	NR	rs13062093-G	0.3664	2E-14		0.019749243	[0.015-0.025] unit increase	Affymetrix [10549349] (imputed)	N
857	chr3	35667056	35667057	rs13062093	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p22.3	NA	rs13062093-T	0.6319	3E-12		0.0122	[0.0089-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
857	chr3	35667760	35667761	rs10490871	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p22.3	NR	rs10490871-G	0.3694	7E-9		0.0272	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
857	chr3	35667760	35667761	rs10490871	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p22.3	NR	rs10490871-A	0.633675	1E-8		0.0124714	[0.0082-0.0168] unit decrease	NR [NR]	N
857	chr3	35670149	35670150	rs1470560	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p22.3	NR	rs1470560-G	0.6433	1E-9		0.0245	[0.017-0.032] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
857	chr3	35671944	35671945	rs9818103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p22.3		rs9818103-?	NR	5E-8				NR [~ 8900000] (imputed)	N
857	chr3	35674247	35674248	rs9867068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p22.3	ARPP21	rs9867068-G	NR	5E-11		0.0214734	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
857	chr3	35674247	35674248	rs9867068	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p22.3	ARPP21	rs9867068-G	NR	8E-11		0.0211929	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
857	chr3	35674247	35674248	rs9867068	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p22.3	NR	rs9867068-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
857	chr3	35678336	35678337	rs7612999	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p22.3	NR	rs7612999-A	0.25	4E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix [2446094] (imputed)	N
857	chr3	35678336	35678337	rs7612999	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p22.3	NR	rs7612999-A	0.25	5E-8				Affymetrix [2446094] (imputed)	N
857	chr3	35678336	35678337	rs7612999	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p22.3	NR	rs7612999-A	0.2469	5E-16		0.0168	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
857	chr3	35683103	35683104	rs9860326	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.3	NR	rs9860326-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
857	chr3	35683103	35683104	rs9860326	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p22.3		rs9860326-?	NR	1E-11				NR [~ 8900000] (imputed)	N
857	chr3	35683934	35683935	rs1542212	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	3p22.3	NR	rs1542212-G	0.3917	4E-10		0.01205	[0.0083-0.0158] unit increase	NR [8968716] (imputed)	N
857	chr3	35683934	35683935	rs1542212	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3p22.3	ARPP21	rs1542212-T	NR	1E-10		0.011229	[0.0078-0.0146] unit increase	Affymetrix [18485882] (imputed)	N
857	chr3	35683934	35683935	rs1542212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p22.3		rs1542212-?	NR	3E-12				NR [~ 8900000] (imputed)	N
857	chr3	35683934	35683935	rs1542212	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p22.3	NR	rs1542212-T	NR	5E-10		6.226	z score decrease	Affymetrix [10847151] (imputed)	N
857	chr3	35683934	35683935	rs1542212	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p22.3	NR	rs1542212-G	NR	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix [10847151] (imputed)	N
857	chr3	35683934	35683935	rs1542212	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3p22.3	ARPP21	rs1542212-T	0.39305	1E-11		6.75	z score decrease	NR [10847151] (imputed)	N
857	chr3	35683934	35683935	rs1542212	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3p22.3	ARPP21	rs1542212-T	0.39305	2E-8		5.62	z score decrease	NR [~ 10847151] (imputed)	N
857	chr3	35683934	35683935	rs1542212	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p22.3	ARPP21	rs1542212-T	0.39305	7E-9		5.786	unit decrease	NR [10847151] (imputed)	N
857	chr3	35693166	35693167	rs9810464	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3p22.3	intergenic	rs9810464-A	0.39291	7E-10		6.162	z score increase	Illumina [18485882] (imputed)	N
857	chr3	35701620	35701621	rs6784162	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p22.3	NR	rs6784162-A	NR	1E-9		6.052	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
857	chr3	35707817	35707818	rs17280180	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.3	NR	rs17280180-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
857	chr3	35707817	35707818	rs17280180	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	3p22.3	ARPP21	rs17280180-G	0.4113	5E-6		0.0071	[0.0042-0.01] unit increase	Affymetrix [~ 7740000] (imputed)	N
857	chr3	35724255	35724256	rs1513475	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p22.3	ARPP21	rs1513475-T	0.6516	2E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
857	chr3	35724595	35724596	rs9811585	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3p22.3	NR	rs9811585-G	NR	4E-9		0.01418	NR unit increase	NR [7259579]	N
857	chr3	35724595	35724596	rs9811585	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3p22.3	ARPP21	rs9811585-T	0.384784	1E-12		7.12	z score decrease	NR [10847151] (imputed)	N
857	chr3	35733263	35733264	rs6776685	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p22.3	ARPP21	rs6776685-T	0.591	2E-10		0.0076	[0.0052-0.01] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
857	chr3	35775114	35775115	rs67723420	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p22.3		rs67723420-T	0.631	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
857	chr3	35775114	35775115	rs67723420	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p22.3	ARPP21	rs67723420-T	0.624313	1E-11		0.0145915	[0.01-0.019] unit decrease	NR [16516521] (imputed)	N
857	chr3	35777792	35777793	rs13084607	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	3p22.3	NR	rs13084607-?	NR	1E-6		0.0211	[0.013-0.03] unit decrease	Illumina [~ 7800000] (imputed)	N
858	chr3	35783534	35783535	rs1513481	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary sodium excretion	446,237 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	3p22.3	MIR128-2	rs1513481-C	0.689494	3E-12	(EA)	0.00933683	[0.0067-0.012] unit decrease	Affymetrix [~ 8800000] (imputed)	N
858	chr3	35784580	35784581	rs13094224	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death)	270,548 European ancestry individuals	NA	3p22.3	NR	rs13094224-G	NR	4E-6		0.01364	[0.0079-0.0194] unit decrease	Illumina [541493]	N
858	chr3	35824911	35824912	rs374070607	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3p22.3		rs374070607-G	NR	6E-6		1.84578		Affymetrix, Illumina [62056310] (imputed)	N
858	chr3	35836738	35836739	rs1184523	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3p22.3	ARPP21	rs1184523-T	0.353951	1E-8		5.72	z score decrease	NR [10847151] (imputed)	N
858	chr3	35907973	35907974	rs9829850	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p22.3	NR	rs9829850-?	NR	8E-6		4.466	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
859	chr3	35940489	35940490	rs9882519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.3	NR	rs9882519-G	0.03833	2E-8	(ME1)	0.07673	NR unit decrease	Illumina [1671387] (imputed)	N
859	chr3	35970882	35970883	rs9845811	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	STAC	rs9845811-?	NR	8E-6	(TAG 48:0)	0.2705929	[0.15-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
859	chr3	35970882	35970883	rs9845811	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p22.3	STAC	rs9845811-?	NR	5E-6	(PC 32:1)	0.27450907	[0.16-0.39] unit decrease	Affymetrix [at least 2500000] (imputed)	N
859	chr3	35982129	35982130	rs6799705	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p22.3	ARPP-21	rs6799705-?	0.04563	2E-7	(PAL8)			Illumina [475971]	N
860	chr3	36077961	36077962	rs2359962	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebral white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p22.3	NR	rs2359962-?		4E-6				Illumina [4322238] (imputed)	N
860	chr3	36112096	36112097	rs2218907	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (global cognition) (slope of z-scores)	1,145 European ancestry individuals	NA	3p22.3	ARPP21, STAC	rs2218907-T	0.48	1E-6				Illumina [5600000] (imputed)	N
861	chr3	36211342	36211343	rs7623430	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	3p22.3	NR	rs7623430-G	NR	7E-6	(phenotype 1)	3.03	[NR]	Illumina [> 8000000] (imputed)	N
861	chr3	36238680	36238681	rs73064179	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Smoking behaviour (maximum cigarettes in a 24 hour period)	1,711 Finnish ancestry ever smoker individuals from up to 739 families	NA	3p22.3	STAC	rs73064179-G	0.010145	3E-8		12.49247	[8.09-16.89] unit increase	Illumina [9469131] (imputed)	N
861	chr3	36239405	36239406	rs9870718	29273806	Demenais F	2017-12-22	Nat Genet	Multiancestry association study identifies new asthma risk loci that colocalize with immune-cell enhancer marks.	Asthma	19,954 European ancestry cases, 107,715 European ancestry controls, 2,149 African ancestry cases, 6,055 African ancestry controls, 1,239 Japanese ancestry cases, 3,976 Japanese ancestry controls, 606 Latino cases, 792 Latino controls	NA	3p22.3	ARPP21, STAC	rs9870718-C	0.64	9E-6	(African)	1.2345679		Affymetrix, Illumina, Perlegen [2831075] (imputed)	N
861	chr3	36244695	36244696	rs141203061	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	3p22.3	NR	rs141203061-?	0.03	4E-7		2.71	[1.84-4.00]	Affymetrix, Illumina [~ 6000000] (imputed)	N
861	chr3	36251975	36251976	rs116705787	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	3p22.3	NR	rs116705787-A	NR	3E-6	(African)	1.1412	[0.66-1.62] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
861	chr3	36271869	36271870	rs76767803	28696415	Maciukiewicz M	2017-07-11	Pharmacogenomics J	Genome-wide association studies of placebo and duloxetine response in major depressive disorder.	Placebo response in major depressive disorder (% change in symptom score)	205 European ancestry individuals	NA	3p22.3	STAC1	rs76767803-?		1E-8		0.69	[NR] unit increase	Illumina [1924595] (imputed)	N
862	chr3	36315200	36315201	rs17838730	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.3	NR	rs17838730-?	NR	6E-11				Affymetrix [NR]	N
862	chr3	36336074	36336075	rs56795768	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (a* coordinate)	329 South Asian ancestry individuals		3p22.3	intergenic	rs56795768-C	0.0163462	4E-6		1.46609	[0.85-2.08] unit decrease	Illumina [640625] (imputed)	N
862	chr3	36336469	36336470	rs141397708	32790701	Rode M	2020-08-13	PLoS One	Genome-wide association analysis of pulse wave velocity traits provide new insights into the causal relationship between arterial stiffness and blood pressure.	Arterial stiffness (brachial-femoral pulse wave velocity)	3,643 European ancestry individuals	NA	3p22.3	RFC3P1, STAC	rs141397708-G	0.03	3E-7		0.102	[0.063-0.141] unit increase	Affymetrix [11342744] (imputed)	N
862	chr3	36409600	36409601	rs2605393	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	3p22.3	STAC	rs2605393-G		6E-6				Illumina [944512] (imputed)	N
862	chr3	36422134	36422135	rs112766131	30886212	Eszlari N	2019-03-18	Transl Psychiatry	Genome-wide association analysis reveals KCTD12 and miR-383-binding genes in the background of rumination.	Brooding (response to stress)	1,758 European ancestry individuals	NA	3p22.3	STAC	rs112766131-A	NR	3E-6		0.1107	unit decrease	Illumina [3474641] (imputed)	N
863	chr3	36495513	36495514	rs149297088	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p22.2	STAC	rs149297088-T	NR	3E-6		0.0271505	[0.016-0.039] unit increase	Illumina [13520550] (imputed)	N
863	chr3	36524404	36524405	rs2290530	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p22.2	STAC	rs2290530-T	NR	1E-6	(men)	0.0382833	[0.023-0.054] unit decrease	Illumina [13520550] (imputed)	N
863	chr3	36566311	36566312	rs116216059	31537649	Salem RM	2019-09-19	J Am Soc Nephrol	Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen.	Kidney disease (end stage renal disease vs non-end stage renal disease) in type 1 diabetes	2,187 European ancestry cases, 17,219 European ancestry controls	NA	3p22.2	STAC	rs116216059-A	0.016	1E-8		8.73	[NR]	Illumina [up to 49000000] (imputed)	N
864	chr3	36647460	36647461	rs17248901	31513605	Jeon S	2019-09-12	PLoS One	Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes.	Subscapular skin fold thickness	8,842 Korean ancestry individuals	NA	3p22.2	NBPF21P	rs17248901-?		2E-7				NR [327872]	N
864	chr3	36680098	36680099	rs950146	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	3p22.2	STAC	rs950146-C	0.491	4E-6				Illumina [840354]	N
865	chr3	36711296	36711297	rs9869380	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Accrued duration of remission in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	3p22.2	NR	rs9869380-?	NR	4E-6		0.9182	[0.57-1.27] unit increase	Affymetrix [7154205] (imputed)	N
865	chr3	36776412	36776413	rs9882438	33590662	Heilbronner U	2021-02-15	Am J Med Genet B Neuropsychiatr Genet	"The Heidelberg Five" personality dimensions: Genome-wide associations, polygenic risk for neuroticism, and psychopathology 20 years after assessment.	Psychoticism	3,268 European ancestry individuals	NA	3p22.2	NR	rs9882438-A	0.0225	2E-8		0.4916	[0.32-0.66] unit increase	Illumina [8348463] (imputed)	N
865	chr3	36796646	36796647	rs9820240	32062564	Guo Y	2020-02-06	Neuroimage Clin	Genome-wide association study of white matter hyperintensity volume in elderly persons without dementia.	White matter hyperintensity volume	350 European ancestry elderly individuals	NA	3p22.2	DCLK3	rs9820240-A	0.2145	2E-7				Illumina [695203] (imputed)	N
866	chr3	36834667	36834668	rs115774037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p22.2		rs115774037-?	NR	2E-8				NR [~ 8900000] (imputed)	N
866	chr3	36842622	36842623	rs13072940	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Psychiatric diseases (pleiotropy) (HIPO component 1)	4,949 autism cases, 2787 ADHD cases, 6,990 bipolar disorder cases, 9,227 depression cases, 9,379 schizophrenia cases, 27,888 controls	NA	3p22.2	NR	rs13072940-?	NR	2E-8				NR [1050000]	N
866	chr3	36842622	36842623	rs13072940	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	3p22.2	NR	rs13072940-A		9E-6	(Modelling analysis)	1.06	[1.03-1.08]	NR [1252901] (imputed)	N
866	chr3	36844070	36844071	rs9882879	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	3p22.2		rs9882879-?	NR	1E-9		0.0208	NR unit increase	NR [4428082] (imputed)	N
866	chr3	36844521	36844522	rs4678552	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p22.2	HSPD1P6	rs4678552-?	NR	2E-13		0.015579467	[0.011-0.02] unit decrease	NR [7306098]	N
866	chr3	36848315	36848316	rs9876421	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	3p22.2		rs9876421-?	NR	2E-8		0.0168	NR unit increase	NR [4484088] (imputed)	N
866	chr3	36856029	36856030	rs9834970	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA	3p22.2		rs9834970-?	NR	5E-13				NR [2625067]	N
866	chr3	36856029	36856030	rs9834970	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA	3p22.2		rs9834970-?	NR	3E-16				NR [2625067]	N
866	chr3	36856029	36856030	rs9834970	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	3p22.2	TRANK1	rs9834970-T	0.519	7E-19		0.92035	[0.9-0.94]	Affymetrix, Illumina [7549318] (imputed)	N
866	chr3	36856029	36856030	rs9834970	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	3p22.2	NR	rs9834970-T	0.523	1E-21		0.89565	[0.87-0.92]	Affymetrix, Illumina [7549318] (imputed)	N
866	chr3	36856029	36856030	rs9834970	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs major depressive disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 170,756 major depressive disorder cases	NA	3p22.2		rs9834970-?	NR	2E-12		0.0194	NR unit increase	NR [6265453] (imputed)	N
866	chr3	36856029	36856030	rs9834970	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs autism spectrum disorder (ordinary least squares (OLS))	20,352 bipolar disorder cases, 18,381 autism spectrum disorder cases	NA	3p22.2		rs9834970-?	NR	2E-11		0.0217	NR unit increase	NR [6135876] (imputed)	N
866	chr3	36856029	36856030	rs9834970	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs ADHD (ordinary least squares (OLS))	20,352 bipolar disorder cases, 19,099 ADHD cases	NA	3p22.2		rs9834970-?	NR	6E-12		0.0242	NR unit increase	NR [5637374] (imputed)	N
866	chr3	36856029	36856030	rs9834970	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	3p22.2	NR	rs9834970-T	0.4891	3E-15		0.085021734	[0.064-0.106] unit decrease	NR [NR]	N
866	chr3	36856029	36856030	rs9834970	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	3p22.2	TRANK1	rs9834970-T	NR	4E-12		0.928	[0.909-0.948]	Illumina [3742365] (imputed)	N
866	chr3	36856029	36856030	rs9834970	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3p22.2	NR	rs9834970-?		4E-14				NR [8377093]	N
866	chr3	36856029	36856030	rs9834970	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA	3p22.2	NR	rs9834970-?		6E-16				NR [520857]	N
866	chr3	36856029	36856030	rs9834970	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder	41,653 individuals	NA	3p22.2	NR	rs9834970-?		4E-12				NR [8956949]	N
866	chr3	36856029	36856030	rs9834970	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p22.2	NR	rs9834970-?		3E-9		0.0127684	[0.0085-0.017] unit increase	Affymetrix [19400418] (imputed)	N
866	chr3	36856029	36856030	rs9834970	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3p22.2	TRANK1, DCLK3	rs9834970-?		2E-17				NR [6786993] (imputed)	N
866	chr3	36856029	36856030	rs9834970	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3p22.2	TRANK1	rs9834970-C	0.491	6E-12		1.0803686		NR [9372253] (imputed)	N
866	chr3	36856029	36856030	rs9834970	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	3p22.2	TRANK1	rs9834970-C	0.491	4E-14		1.1213151	[NR]	NR [9372253] (imputed)	N
866	chr3	36856029	36856030	rs9834970	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	3p22.2	TRANK1	rs9834970-C	NR	2E-9		1.11554	[1.07634-1.15616]	Illumina [at least 6195093] (imputed)	N
866	chr3	36856029	36856030	rs9834970	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	3p22.2	TRANK1	rs9834970-?	NR	2E-10		1.11		Affymetrix, Illumina [8837380] (imputed)	N
866	chr3	36856029	36856030	rs9834970	27329760	Hou L	2016-06-21	Hum Mol Genet	Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder.	Bipolar disorder	7,647 European ancestry cases, 27,303 European ancestry controls	2,137 European ancestry cases, 3,168 European ancestry controls	3p22.2	TRANK1	rs9834970-T	0.5	5E-10		1.14	[1.09-1.18]	Affymetrix, Illumina [9692718] (imputed)	N
866	chr3	36856029	36856030	rs9834970	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment	1,639  European ancestry bipolar disorder responder cases, 8,899 European ancestry controls	NA	3p22.2	TRANK1, MLH1, MIR4273, LRRFIP2, GOLGA4, FRG2C, EPM2AIP1	rs9834970-C	0.5	8E-7		1.22	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
866	chr3	36856029	36856030	rs9834970	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	3p22.2	TRANK1	rs9834970-?	NR	4E-7	(BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
866	chr3	36856029	36856030	rs9834970	24280982	Ruderfer DM	2013-11-26	Mol Psychiatry	Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.	Schizophrenia or bipolar disorder	Up to 4,528 European ancestry schizophrenia cases, up to 4,841 schizophrenia cases, up to 7,362 European ancestry bipolar disorder cases, up to 3,048 bipolar disorder cases, up to 11,637 European ancestry controls, up to 7,786 controls	NA	3p22.2	TRANK1	rs9834970-?		1E-10	(SCZ or BP vs. controls)			Affymetrix, Illumina [~ 1100000] (imputed)	N
866	chr3	36856029	36856030	rs9834970	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	3p22.2	NR	rs9834970-C	NR	2E-6	(5 degree of freedom test)	1.051	[1.03-1.07]	NR [1252901] (imputed)	N
866	chr3	36856029	36856030	rs9834970	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	3p22.2	TRANK1, LBA	rs9834970-?	NR	1E-7		1.22	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
866	chr3	36856029	36856030	rs9834970	22182935	Chen DT	2011-12-20	Mol Psychiatry	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese ancestry cases, 1,000 Taiwanese ancestry controls	1,115 European ancestry cases, 2,728 European ancestry controls	3p22.2	TRANK1	rs9834970-C	NR	1E-12				Affymetrix, Illumina [748555]	N
866	chr3	36858582	36858583	rs75968099	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3p22.2	NR	rs75968099-?		2E-10				NR [8377093]	N
866	chr3	36858582	36858583	rs75968099	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3p22.2	NR	rs75968099-?	NR	2E-13				Illumina [up to 5582932] (imputed)	N
866	chr3	36858582	36858583	rs75968099	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p22.2	TRANK1	rs75968099-T	NR	2E-12	(EA)	1.0834236	[1.06-1.11]	Illumina [6627481] (imputed)	N
866	chr3	36858582	36858583	rs75968099	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3p22.2	TRANK1	rs75968099-?	NR	9E-11		1.0683761	[1.05-1.09]	Illumina [8000000] (imputed)	N
866	chr3	36858582	36858583	rs75968099	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p22.2	EPM2AIP1, GOLGA4, LRRFIP2, MLH1, TRANK1	rs75968099-T		1E-11		1.07	[1.05-1.09]	Affymetrix, Illumina [NR]	N
866	chr3	36858582	36858583	rs75968099	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p22.2	NR	rs75968099-T	NR	2E-12		1.08	[NR]	Illumina [7158791] (imputed)	N
866	chr3	36858582	36858583	rs75968099	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3p22.2	TRANK1	rs75968099-T	0.324	1E-13		1.085	[1.062-1.109]	Affymetrix, Illumina [9005918] (imputed)	N
866	chr3	36859493	36859494	rs114848860	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p22.2	DCLK3, TRANK1	rs114848860-T	0.02629999999999999	1E-13		1.0876659		Affymetrix [11880941] (imputed)	N
866	chr3	36859493	36859494	rs114848860	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p22.2	DCLK3, TRANK1	rs114848860-T	0.02629999999999999	1E-13		1.0798261		Affymetrix [11880941] (imputed)	N
866	chr3	36862979	36862980	rs4624519	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p22.2	NR	rs4624519-?	NR	2E-7		1.09	[1.05-1.12]	Affymetrix, Illumina [1252901] (imputed)	N
866	chr3	36864159	36864160	rs9917659	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	3p22.2	DCLK3, LBA1	rs9917659-?	0.64	5E-6	(Turkish)	1.5625	[1.3-1.89]	Illumina [up to 547389]	N
866	chr3	36864488	36864489	rs6550435	24618891	Muhleisen TW	2014-03-11	Nat Commun	Genome-wide association study reveals two new risk loci for bipolar disorder.	Bipolar disorder	9,747 European ancestry cases, 14,278 European ancestry controls	NA	3p22.2	TRANK1	rs6550435-G	NR	2E-8		1.13	[NR]	Illumina [2267487] (imputed)	N
866	chr3	36864488	36864489	rs6550435	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	3p22.2	intergenic	rs6550435-G	0.344	6E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [9871789]	N
866	chr3	36864488	36864489	rs6550435	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	3p22.2	LBA1	rs6550435-G	NR	9E-6		1.09	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
866	chr3	36870229	36870230	rs11129735	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p22.2	NR	rs11129735-G	0.5383	2E-8		0.026	[0.017-0.035] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
866	chr3	36871506	36871507	rs7652637	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	3p22.2	NR	rs7652637-T	0.6262	7E-13		0.08114434	[0.059-0.103] unit decrease	NR [NR]	N
866	chr3	36871992	36871993	rs3732386	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p22.2	NR	rs3732386-?	NR	3E-11		1.07326	[1.05-1.09]	Affymetrix, Illumina [12447948] (imputed)	N
866	chr3	36871992	36871993	rs3732386	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p22.2	TRANK1	rs3732386-T	NR	4E-11		1.074	[1.05-1.1]	Illumina [6627481] (imputed)	N
866	chr3	36871992	36871993	rs3732386	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p22.2	DCLK3, MLH1, TRANK1	rs3732386-T	NR	3E-11		1.075	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
866	chr3	36877798	36877805	rs71947865	33737391	Ambati A	2021-03-01	Proc Natl Acad Sci U S A	Kleine-Levin syndrome is associated with birth difficulties and genetic variants in the <i>TRANK1</i> gene loci.	Kleine-Levin syndrome	136 Asian ancestry cases, 3,123 Asian ancestry controls, 299 European ancestry cases, 9,373 European ancestry controls, 16 Latino cases, 1,980 Latino controls, 41 Ashkenazi Jewish ancestry cases, 183 Ashkenazi Jewish ancestry controls, 181 non-Ashkenazi Jewish ancestry cases, 680 non-Ashkenazi Jewish ancestry controls	171 cases, 1,956 controls	3p22.2	TRANK1	rs71947865-G	0.294004	4E-8		1.4001775	NR	Affymetrix [104626] (imputed)	N
866	chr3	36892716	36892717	rs4441609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p22.2	TRANK1	rs4441609-T	0.374426	4E-8		0.0111193	[0.0071-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
866	chr3	36892716	36892717	rs4441609	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	3p22.2	NR	rs4441609-C		8E-6		0.1039	[0.058-0.149] SD units decrease	NR [10700000] (imputed)	N
866	chr3	36918400	36918401	rs73068042	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3p22.2	TRANK1	rs73068042-G	0.9396	8E-6		1.1203101		NR [9372253] (imputed)	N
866	chr3	36938179	36938180	rs4328757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p22.2		rs4328757-T	0.6119	3E-11		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
866	chr3	36938179	36938180	rs4328757	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p22.2	Intergenic	rs4328757-T	0.6119	1E-10	(MTAG)	0.0086	[0.0061-0.0111] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
866	chr3	36951897	36951898	rs4425211	29109912	Rawofi L	2017-11-02	PeerJ	Genome-wide association study of pigmentary traits (skin and iris color) in individuals of East Asian ancestry.	Iris color (L* coordinate)	377 East Asian ancestry individuals	NA	3p22.2	TRANK1	rs4425211-G	0.0715643	7E-6		0.676012	[0.39-0.97] unit decrease	Illumina [at least 520076] (imputed)	N
866	chr3	36952931	36952932	rs6779665	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3p22.2		rs6779665-C	NR	2E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
866	chr3	36954361	36954368	rs147270945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p22.2		rs147270945-A	NR	3E-10		0.0135	[0.0092-0.0178] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
866	chr3	36959791	36959792	rs6772646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	TRANK1	rs6772646-G	0.569301	4E-8	(-184 ms)	0.0305983	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr3	36959791	36959792	rs6772646	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	TRANK1	rs6772646-G	0.569301	3E-8	(-186 ms)	0.0307949	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
866	chr3	36960659	36960660	rs7622114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p22.2		rs7622114-A	NR	3E-10		0.0133	[0.0092-0.0174] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
866	chr3	36960659	36960660	rs7622114	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p22.2	TRANK1	rs7622114-C	0.418986	3E-9		0.0115403	[0.0077-0.0153] unit decrease	Affymetrix [NR] (imputed)	N
867	chr3	36962587	36962588	rs11714248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p22.2	TRANK1	rs11714248-A	0.418472	6E-9		0.013154226	[0.0087-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr3	36963419	36963420	rs11129743	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p22.2	NR	rs11129743-C	0.582408	1E-11		0.013191	[0.0094-0.017] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
867	chr3	36964582	36964583	rs4678915	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p22.2	TRANK1	rs4678915-A	0.4328	6E-15		0.1386	[0.1-0.17] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
867	chr3	36964853	36964854	rs6789885	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3p22.2	TRANK1	rs6789885-T	0.2778	2E-10		0.02626019	[0.018-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
867	chr3	36968346	36968347	rs11926768	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3p22.2		rs11926768-?	NR	8E-9				NR [~ 8900000] (imputed)	N
867	chr3	36979041	36979042	rs6777217	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs6777217-A	0.4449	2E-11		0.10526945	[0.074-0.136] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
867	chr3	36979041	36979042	rs6777217	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p22.2	TRANK1	rs6777217-A	0.4742	5E-8		0.0101	[0.0066-0.0136] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
867	chr3	36979041	36979042	rs6777217	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p22.2	TRANK1	rs6777217-A	0.4746	3E-12		0.0129	[0.0092-0.0166] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
867	chr3	36992404	36992405	rs4431051	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p22.2	NR	rs4431051-C	0.550398	1E-10		0.0126746	[0.0088-0.0165] unit increase	NR [NR]	N
867	chr3	37004907	37004908	rs7633998	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p22.2		rs7633998-T	NR	1E-41		0.0274	[0.023-0.031] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
867	chr3	37006261	37006262	rs7615363	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p22.2		rs7615363-G	NR	3E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
867	chr3	37007395	37007396	rs4678556	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3p22.2	EPM2AIP1	rs4678556-C	0.543097	1E-49		0.00755034	[0.0065-0.0086] unit increase	Affymetrix [13995440] (imputed)	N
867	chr3	37007861	37007862	rs9847384	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p22.2		rs9847384-G	0.47	1E-13		7.42	z score increase	Affymetrix [9061022] (imputed)	N
867	chr3	37025660	37025661	rs9831084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p22.2		rs9831084-C	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
867	chr3	37025660	37025661	rs9831084	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p22.2	EPM2AIP1	rs9831084-T	0.538079	6E-9		0.0116305	[0.0077-0.0156] unit increase	Affymetrix [NR] (imputed)	N
867	chr3	37034945	37034946	rs1800734	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Proximal colorectal cancer	15,706 European ancestry cases, 64,159 European ancestry controls	NA	3p22.2	MLH1	rs1800734-A	0.247	4E-18		1.15	[1.11-1.19]	Affymetrix, Illumina [11437803] (imputed)	N
867	chr3	37034945	37034946	rs1800734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p22.2	NR	rs1800734-A	NR	1E-9		0.0178	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
867	chr3	37042959	37042960	rs4647222	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3p22.2	MLH1	rs4647222-A	0.542862	4E-15		0.00299979	[0.0022-0.0038] unit increase	Affymetrix [13995440] (imputed)	N
867	chr3	37055712	37055712	rs138898092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p22.2	MLH1	rs138898092-TGGGA	0.446089	2E-18		0.02003284	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
867	chr3	37083739	37083740	rs9876116	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3p22.2	MLH1	rs9876116-A	0.54	2E-8		5.61	z-score increase	Affymetrix [4312306] (imputed)	N
867	chr3	37088101	37088102	rs11926842	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p22.2		rs11926842-A	0.41	1E-10		6.44	z score increase	Affymetrix [9061022] (imputed)	N
867	chr3	37088101	37088102	rs11926842	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p22.2	NR	rs11926842-A	0.3994	5E-10				NR [9056863] (imputed)	N
867	chr3	37089505	37089505	rs796467635	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3p22.2		rs796467635-CA	0.486745	7E-11		0.0433015	[0.029-0.057] decrease	Affymetrix [NR]	N
867	chr3	37091324	37091325	rs1860968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p22.2	NR	rs1860968-A	NR	9E-37		0.0304	[0.026-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
867	chr3	37091324	37091325	rs1860968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3p22.2	NR	rs1860968-A	NR	4E-11		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
867	chr3	37091324	37091325	rs1860968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3p22.2	NR	rs1860968-A	NR	1E-10		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
868	chr3	37181014	37181015	rs4678938	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.2		rs4678938-?	NR	2E-12				NR [~ 8900000] (imputed)	N
868	chr3	37187898	37187899	rs111853528	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LRRFIP2	rs111853528-?	NR	8E-10	(male)	3.27433	[NR] unit increase	Affymetrix [NR] (imputed)	N
868	chr3	37195392	37195393	rs114113385	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3p22.2		rs114113385-?	NR	5E-6		0.18256626	[0.1-0.26] unit decrease	Illumina [9939936] (imputed)	N
868	chr3	37205014	37205015	rs6786857	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.2	NR	rs6786857-?	NR	5E-6				Affymetrix [NR]	N
869	chr3	37234588	37234589	rs7631605	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs7631605-T	0.4838	6E-20		0.14368442	[0.11-0.17] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
869	chr3	37234588	37234589	rs7631605	20932310	Han MR	2010-10-08	BMC Neurol	Genome-wide association reveals genetic effects on human A?42 and ? protein levels in cerebrospinal fluids: a case control study.	Cerebrospinal P-tau181p levels	172 European ancestry Alzheimer's disease cases, 109 European ancestry mild cognitive impairment cases, 109 European ancestry controls	NA	3p22.2	intergenic	rs7631605-T	NR	1E-6	(MCI)			Illumina [498205]	N
869	chr3	37253944	37253945	rs4678561	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3p22.2		rs4678561-A	NR	4E-8		0.0487	[0.031-0.066] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
869	chr3	37258062	37258063	rs7632108	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.2	GOLGA4	rs7632108-A	0.4674	1E-11		0.1326	[0.094-0.171] mmHg increase	Affymetrix [NR] (imputed)	N
869	chr3	37266677	37266678	rs9874437	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p22.2		rs9874437-T	0.48	4E-10		6.24	z score increase	Affymetrix [9061022] (imputed)	N
869	chr3	37266677	37266678	rs9874437	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p22.2	NR	rs9874437-T	0.4941	3E-9				NR [9056863] (imputed)	N
869	chr3	37333708	37333709	rs62244338	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p22.2	NR	rs62244338-A	NR	2E-9		0.0229	[0.015-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
870	chr3	37366458	37366459	rs11718848	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs11718848-A	0.3933	1E-18		0.13875072	[0.11-0.17] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
870	chr3	37410703	37410704	rs6799780	32439431	Simard M	2020-05-19	J Allergy Clin Immunol	Polygenic risk score for atopic dermatitis in the Canadian population.	Atopic dermatitis (moderate to severe)	222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis	NA	3p22.2		rs6799780-G	NR	7E-24	(additive)	1.188	[0.957-1.42] unit increase	Illumina [5894709] (imputed)	N
870	chr3	37423134	37423135	rs7653557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p22.2		rs7653557-T	NR	4E-8		0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
870	chr3	37428860	37428861	rs78131239	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	3p22.2	NR	rs78131239-C	0.9611	2E-21		2.2971	[1.82-2.77] unit decrease	Affymetrix, Illumina [12989440] (imputed)	N
870	chr3	37444610	37444611	rs78784579	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	34,467 European ancestry individuals, 6,148 African American individuals	NA	3p22.2	NR	rs78784579-?	NR	2E-10				Affymetrix, Illumina [6210740] (imputed)	N
870	chr3	37466034	37466035	rs112026459	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		C3orf35	rs112026459-?	NR	5E-8		2.42389	[NR] unit decrease	Affymetrix [NR] (imputed)	N
870	chr3	37485746	37485747	rs9814320	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p22.2	NR	rs9814320-T	NR	8E-15		0.019	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
871	chr3	37504864	37504865	rs197722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p22.2		rs197722-?	NR	3E-10				NR [~ 8900000] (imputed)	N
871	chr3	37507614	37507615	rs199281	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p22.2	ITGA9	rs199281-T	0.152335	2E-10		0.0163183	[0.011-0.021] unit decrease	NR [13737936] (imputed)	N
871	chr3	37507614	37507615	rs199281	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.2		rs199281-?	NR	1E-9		0.017885	[0.012-0.024] unit decrease	Affymetrix [20259828] (imputed)	N
871	chr3	37515826	37515827	rs197770	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	3p22.2	ITGA9	rs197770-?	NR	2E-8	(levels)	0.8	[NR] % increase	Illumina [NR] (imputed)	N
871	chr3	37518544	37518545	rs189897	19478819	Ng CC	2009-05-29	J Hum Genet	A genome-wide association study identifies ITGA9 conferring risk of nasopharyngeal carcinoma.	Nasopharyngeal carcinoma	111 Malaysian Chinese ancestry cases, 260 Malaysian Chinese ancestry controls	168 Malaysian Chinese ancestry cases, 252 Malaysian Chinese ancestry controls	3p22.2	ITGA9	rs189897-A	0.09	7E-8		3.18	[1.94-5.21]	Illumina [533048]	N
871	chr3	37535576	37535577	rs174829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p22.2	NR	rs174829-G	0.65	1E-11		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
871	chr3	37535576	37535577	rs174829	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p22.2	NR	rs174829-G	0.65	5E-8				Affymetrix [2446094] (imputed)	N
871	chr3	37535576	37535577	rs174829	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p22.2	NR	rs174829-A	0.3523	6E-13		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
871	chr3	37535865	37535866	rs539108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p22.2		rs539108-?	NR	2E-11				NR [~ 8900000] (imputed)	N
871	chr3	37536711	37536712	rs267519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p22.2		rs267519-?	NR	1E-7				NR [~ 8900000] (imputed)	N
871	chr3	37539089	37539090	rs267517	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p22.2	ITGA9	rs267517-A	0.5891	8E-15		0.1376	[0.1-0.17] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
871	chr3	37540481	37540482	rs116692768	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	3p22.2	ITGA9	rs116692768-?	NR	2E-6		0.1261	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
871	chr3	37562140	37562141	rs155524	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p22.2	NA	rs155524-A	0.5905	1E-13		0.0134	[0.0099-0.0169] unit increase	NR [~ 27400000] (imputed)	N
871	chr3	37570379	37570380	rs267513	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p22.2		rs267513-T	NR	1E-9		0.0121	[0.0082-0.016] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
871	chr3	37574023	37574024	rs267567	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	3p22.2	ITGA9	rs267567-A	0.18	4E-11		2.73	[1.93-3.53] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
871	chr3	37574950	37574951	rs267561	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs267561-A	0.5869	1E-13		0.1641385	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
871	chr3	37574950	37574951	rs267561	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs267561-A	0.587	1E-10		0.10529189	[0.074-0.137] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
871	chr3	37575269	37575270	rs267559	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p22.2	ITGA9	rs267559-C	NR	3E-8		0.01656	[0.011-0.022] unit increase	Affymetrix [321788] (imputed)	N
871	chr3	37579487	37579488	rs267543	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p22.2	NR	rs267543-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
871	chr3	37581842	37581843	rs267540	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.2	ITGA9	rs267540-A	0.6007	6E-11		0.1274	[0.089-0.166] mmHg decrease	Affymetrix [NR] (imputed)	N
871	chr3	37582251	37582252	rs267539	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.2	ITGA9	rs267539-A	0.4635	1E-11		0.1784	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
871	chr3	37589243	37589244	rs174831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p22.2	ITGA9	rs174831-A	NR	5E-10		0.0175782	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
871	chr3	37596804	37596805	rs7640747	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p22.2		rs7640747-G	NR	2E-8		0.0119	[0.0078-0.016] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
871	chr3	37596804	37596805	rs7640747	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p22.2	ITGA9	rs7640747-G	0.37375	4E-11		0.015438396	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
871	chr3	37596804	37596805	rs7640747	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p22.2	NR	rs7640747-G	0.378149	2E-10		0.012176	[0.0084-0.0159] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
871	chr3	37600469	37600470	rs919113	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p22.2	NR	rs919113-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
871	chr3	37604011	37604012	rs9825420	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3p22.2	ITGA9	rs9825420-?	0.33	3E-8		3.0335	[2.272478-4.049382]	Illumina [859311]	N
872	chr3	37668945	37668946	rs71614157	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	3p22.2	NR	rs71614157-?	NR	4E-6		0.0426	[0.025-0.061] unit increase	Illumina [~ 7800000] (imputed)	N
872	chr3	37731759	37731760	rs981057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.2		rs981057-?	NR	1E-14				NR [~ 8900000] (imputed)	N
873	chr3	37806926	37806927	rs13079586	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-human herpes virus 6 IE1A IgG seropositivity	8,735 White British ancestry individuals	NA	3p22.2	ITGA9	rs13079586-C	0.674	5E-8		0.01	[-0.02528-0.04528] unit decrease	NR [25472218] (imputed)	N
873	chr3	37832171	37832172	rs2507948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p22.2	NR	rs2507948-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
873	chr3	37832171	37832172	rs2507948	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p22.2	NR	rs2507948-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
873	chr3	37832171	37832172	rs2507948	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p22.2		rs2507948-?	NR	2E-11				NR [~ 8900000] (imputed)	N
873	chr3	37837104	37837105	rs62241534	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p22.2	ITGA9	rs62241534-C	0.0145173348309988	1E-6	(G_Streptococcus_RNT)	0.517823	[0.31-0.73] unit increase	Illumina [7711310] (imputed)	N
873	chr3	37839424	37839425	rs111854254	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p22.2		rs111854254-?	NR	2E-6		0.4893659	[0.29-0.69] unit increase	Illumina [9875426] (imputed)	N
873	chr3	37850076	37850077	rs1124374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p22.2	Intergenic	rs1124374-A	0.957	1E-8		0.0273	[0.018-0.037] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
873	chr3	37853058	37853059	rs72862231	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	3p22.2	ITGA9, ITGA9-AS1	rs72862231-A	0.05	2E-6	(European)	4.4		Illumina [7993459] (imputed)	N
873	chr3	37855113	37855114	rs11129773	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	3p22.2	NR	rs11129773-A	0.061	8E-6		17.899	[NR] unit increase	Illumina [527829]	N
874	chr3	37919761	37919762	rs78192244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p22.2		rs78192244-G	NR	7E-14		0.0243	[0.018-0.031] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
874	chr3	37919761	37919762	rs78192244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p22.2	CTDSPL	rs78192244-G	0.09185	1E-20		0.03562461	[0.028-0.043] unit increase	Affymetrix [93095623] (imputed)	N
874	chr3	37919761	37919762	rs78192244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs78192244-G	0.0784249	2E-27				Affymetrix, Illumina [24332387] (imputed)	N
874	chr3	37919761	37919762	rs78192244	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p22.2	NR	rs78192244-G	0.091421	3E-29		0.036022	[0.03-0.042] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
874	chr3	37919761	37919762	rs78192244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p22.2		rs78192244-?	NR	2E-19				NR [~ 8900000] (imputed)	N
874	chr3	37962471	37962472	rs77388365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p22.2		rs77388365-C	NR	2E-15		0.0239	[0.018-0.03] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
874	chr3	37962471	37962472	rs77388365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs77388365-C	0.0831957	5E-10				Affymetrix, Illumina [23472807] (imputed)	N
874	chr3	37962471	37962472	rs77388365	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p22.2	NR	rs77388365-C	0.092926	3E-11		0.021559	[0.015-0.028] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
874	chr3	37987591	37987592	rs6550512	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p22.2	CTDSPL	rs6550512-A	0.166611	4E-11		0.019660035	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
874	chr3	37987855	37987856	rs9816588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p22.2		rs9816588-A	NR	8E-15		0.0236	[0.018-0.029] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p22.2	CTDSPL	rs9816588-A	0.098761	3E-22		0.03601715	[0.029-0.043] unit increase	Affymetrix [93095623] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p22.2	CTDSPL	rs9816588-A	0.098747	7E-24		0.03737323	[0.03-0.045] unit increase	Affymetrix [93095623] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.0907867	3E-12				Affymetrix, Illumina [23467995] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.098713	2E-13		0.022994	[0.017-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.0869673	1E-28				Affymetrix, Illumina [24653286] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.098359	4E-31		0.035841	[0.03-0.042] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.0871802	9E-29				Affymetrix, Illumina [24558453] (imputed)	N
874	chr3	37987855	37987856	rs9816588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p22.2	NR	rs9816588-A	0.098402	3E-31		0.035976	[0.03-0.042] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
874	chr3	37993375	37993376	rs6791946	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p22.2	CTDSPL	rs6791946-G	0.135038	1E-10		0.020713992	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
874	chr3	37996476	37996477	rs9311171	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	3p22.2	CTDSPL	rs9311171-?	NR	2E-6				Affymetrix [70897]	N
875	chr3	38015001	38015002	rs76562038	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs76562038-G	0.0454998	3E-16				Affymetrix, Illumina [24246363] (imputed)	N
875	chr3	38019427	38019428	rs9826470	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p22.2		rs9826470-T	NR	4E-27		0.0189	[0.015-0.022] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
875	chr3	38019427	38019428	rs9826470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p22.2	CTDSPL	rs9826470-T	NR	3E-8		0.0181226	[0.012-0.025] unit increase	Affymetrix [321016] (imputed)	N
875	chr3	38019427	38019428	rs9826470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.2		rs9826470-?	NR	1E-33				NR [~ 8900000] (imputed)	N
875	chr3	38080951	38080952	rs7625806	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	3p22.2	DLEC1	rs7625806-?	NR	7E-6	(Multiple-adjusted)			Illumina [32817]	N
875	chr3	38103775	38103776	rs116202356	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	3p22.2	DLEC1	rs116202356-A	0.014039	4E-29		1.545066	[1.28-1.81] ms decrease	Illumina [162199]	N
875	chr3	38103775	38103776	rs116202356	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	3p22.2	DLEC1	rs116202356-A	0.0165154527738567	6E-20		1.617344	[1.27-1.96] ms decrease	Illumina [213295]	N
876	chr3	38158346	38158347	rs75614900	29206233	Shendre A	2017-12-04	PLoS One	Genome-wide admixture and association study of subclinical atherosclerosis in the Women's Interagency HIV Study (WIHS).	Common carotid intima-media thickness in HIV negative individuals	288 Black non-Hispanic HIV-negative women	NA	3p22.2	DLEC1	rs75614900-T	NR	6E-6		0.02512	[NR] unit increase	Illumina [1124301]	N
876	chr3	38187993	38187994	rs172111	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	3p22.2		rs172111-C	0.86395	2E-9		0.0318016	[0.021-0.042] unit increase	Illumina [13477028] (imputed)	N
876	chr3	38187993	38187994	rs172111	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	3p22.2	MYD88, OXSR1	rs172111-?	NR	2E-8		0.03488	[0.023-0.047] unit increase novel	Illumina [6108953] (imputed)	N
876	chr3	38207038	38207038	rs573682388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p22.2		rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	NR	6E-13		0.0503	[0.037-0.064] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
876	chr3	38207038	38207038	rs573682388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p22.2		rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	NR	7E-12		0.0464	[0.033-0.06] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
876	chr3	38207038	38207038	rs573682388	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p22.2	NR	rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	NR	1E-11		0.0492	[0.035-0.064] unit decrease	Affymetrix [9000000] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p22.2	OXSR1	rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	0.0349120000000001	3E-20		0.060446173	[0.048-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p22.2	OXSR1	rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	0.034915	3E-23		0.06570269	[0.053-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p22.2	OXSR1	rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	0.034934	8E-18		0.0505949	[0.039-0.062] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p22.2	OXSR1	rs573682388-TGGGGCTGGGGTGGAGGGCGGGACAGA	0.034936	3E-9		0.03906677	[0.026-0.052] unit decrease	Affymetrix [93095623] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p22.2	NR	rs573682388-I	0.035433	5E-19		0.051474	[0.04-0.063] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
876	chr3	38207038	38207038	rs573682388	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3p22.2	NR	rs573682388-I	0.035438	6E-12		0.042067	[0.03-0.054] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
876	chr3	38228408	38228409	rs117297673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p22.2		rs117297673-C	NR	1E-11		0.066	[0.047-0.085] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
876	chr3	38228408	38228409	rs117297673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	3p22.2		rs117297673-C	0.040062	1E-11		0.0660346	[0.047-0.085] unit decrease	Illumina [13475706] (imputed)	N
876	chr3	38259707	38259708	rs116034739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p22.2		rs116034739-?	NR	6E-9				NR [~ 8900000] (imputed)	N
876	chr3	38271880	38271881	rs6599079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs6599079-C	0.889821	4E-17				Affymetrix, Illumina [22063850] (imputed)	N
876	chr3	38271880	38271881	rs6599079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs6599079-T	0.0991418	2E-10				Affymetrix, Illumina [21126107] (imputed)	N
876	chr3	38271880	38271881	rs6599079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p22.2		rs6599079-?	NR	1E-13				NR [~ 8900000] (imputed)	N
877	chr3	38289250	38289251	rs3925158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p22.2	OXSR1	rs3925158-G	0.102796	1E-12		0.025953565	[0.019-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
877	chr3	38289250	38289251	rs3925158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p22.2	NR	rs3925158-C	0.896557	4E-19		0.027646	[0.022-0.034] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
877	chr3	38289250	38289251	rs3925158	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3p22.2	SLC22A13, MYD88, DLEC1, ACAA1, OXSR1	rs3925158-C	NR	6E-9	(OTU10032 unclassified Enterobacteriaceae Species-level OTU)	1.0	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
877	chr3	38382347	38382348	rs151629	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.2	NR	rs151629-C	0.4704	2E-8	(XYLB)	0.005186	NR unit decrease	Illumina [1671387] (imputed)	N
877	chr3	38395561	38395562	rs3132440	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	3p22.2	XYLB	rs3132440-C	0.35	3E-14	(glycolate)	0.0752	[NR] unit increase	Affymetrix [620456]	N
878	chr3	38404471	38404472	rs17118	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.2	NR	rs17118-A	0.3118	1E-11	(XYLB)	0.006307	NR unit decrease	Illumina [1671387] (imputed)	N
878	chr3	38421791	38421792	rs196376	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3p22.2	XYLB	rs196376-G	0.5768	1E-8		0.0059	[0.0039-0.0079] unit increase	Affymetrix [~ 7740000] (imputed)	N
878	chr3	38421791	38421792	rs196376	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Hippocampal volume	926 European ancestry individuals	NA	3p22.2	XYLB	rs196376-?		7E-7	(corrected for APOE4 status)	0.14	[NR] unit decrease	Illumina [5137218] (imputed)	N
878	chr3	38432384	38432385	rs17037644	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.2	NR	rs17037644-?	NR	7E-6				Affymetrix [NR]	N
878	chr3	38437470	38437471	rs1381798	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	3p22.2		rs1381798-G	0.707685	1E-8		0.0223964	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
878	chr3	38438181	38438182	rs2067082	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p22.2	NR	rs2067082-C	0.559023	7E-11		0.0453228	[0.032-0.059] unit increase	Affymetrix [17914406] (imputed)	N
878	chr3	38438181	38438182	rs2067082	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p22.2		rs2067082-?	NR	2E-7				NR [~ 8900000] (imputed)	N
878	chr3	38438371	38438372	rs1858740	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p22.2	NR	rs1858740-C	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
878	chr3	38439600	38439601	rs79834959	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs79834959-A	0.428169	6E-12		0.0602105	[0.042-0.078] decrease	Affymetrix [11014269] (imputed)	N
878	chr3	38442489	38442490	rs2070488	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	3p22.2	SCN5A	rs2070488-A	0.33	4E-6	(PR interval)	5.0	[2.84-7.16] ms decrease	Affymetrix [338049]	N
878	chr3	38462217	38462217	rs34716648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p22.2		rs34716648-CT	NR	6E-28		0.018	[0.015-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
878	chr3	38467248	38467249	rs73063271	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p22.2	XYLB	rs73063271-A	NR	6E-6		0.17	[0.092-0.248] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
878	chr3	38479474	38479475	rs7429308	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3p22.2	ACVR2B, XYLB	rs7429308-C	0.4951	5E-11		6.574	NR z score decrease	Illumina [26237160] (imputed)	N
878	chr3	38496192	38496193	rs3749387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p22.2		rs3749387-?	NR	2E-8				NR [~ 8900000] (imputed)	N
878	chr3	38498438	38498439	rs36070911	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3p22.2	XYLB	rs36070911-G	0.528	2E-11		0.296	[0.12-0.47] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
878	chr3	38514326	38514327	rs2268759	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	3p22.2	ACVR2B	rs2268759-A	0.5975	2E-6		0.0079	[0.0048-0.011] unit increase	Affymetrix [~ 7740000] (imputed)	N
878	chr3	38516074	38516075	rs2268762	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p22.2	ACVR2B	rs2268762-A	0.388067	3E-8		0.00799477	[0.0052-0.0108] unit decrease	Affymetrix [12370749]	N
878	chr3	38527214	38527215	rs11914389	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p22.2	ACVR2B	rs11914389-T	0.4815	8E-26		0.003	[0.0024-0.0036] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
879	chr3	38537670	38537671	rs9838614	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p22.2	EXOG	rs9838614-T	0.6119	1E-21		0.0185	[0.015-0.022] unit increase	Affymetrix [18391927] (imputed)	N
879	chr3	38540540	38540541	rs2300668	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p22.2	NR	rs2300668-G	0.433859	1E-9		0.0426799	[0.029-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
879	chr3	38541317	38541318	rs2300669	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3p22.2	NR	rs2300669-A	0.386	4E-8		0.00741178	[0.0048-0.0101] unit decrease	NR [~ 9732723] (imputed)	N
879	chr3	38546725	38546726	rs9838792	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p22.2	EXOG	rs9838792-A	0.386	7E-24		0.0031	[0.0023-0.0039] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	7E-10	(-86 ms)	0.0488566	[0.034-0.064] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	6E-11	(-112 ms)	0.0496573	[0.034-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	5E-8	(-80 ms)	0.0436063	[0.028-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	5E-11	(-92 ms)	0.0511439	[0.036-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	5E-10	(-114 ms)	0.0480233	[0.033-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	3E-9	(-116 ms)	0.0463133	[0.031-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	3E-11	(-106 ms)	0.0514629	[0.036-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	2E-8	(-84 ms)	0.045014	[0.03-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	2E-11	(-108 ms)	0.0521886	[0.037-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	1E-8	(-118 ms)	0.0448188	[0.03-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	1E-11	(-110 ms)	0.0519419	[0.037-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	1E-11	(-104 ms)	0.0517544	[0.037-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	1E-10	(-90 ms)	0.0500675	[0.035-0.065] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38551124	38551125	rs62241772	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	EXOG	rs62241772-A	0.84799	1E-10	(-88 ms)	0.0505803	[0.035-0.066] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38552249	38552250	rs7630012	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	3p22.2	EXOG	rs7630012-A	0.5665	7E-9		0.013055859	[0.0086-0.0175] unit increase	Affymetrix [11514936] (imputed)	N
879	chr3	38559214	38559215	rs17037804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p22.2	NR	rs17037804-G	NR	4E-12		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
879	chr3	38559214	38559215	rs17037804	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p22.2	NR	rs17037804-G	NR	1E-12		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
879	chr3	38559748	38559749	rs2051211	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs2051211-?	NR	1E-12	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
879	chr3	38559748	38559749	rs2051211	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p22.2	EXOG	rs2051211-G	0.26	3E-23	(European)	0.44	[0.28-0.6] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
879	chr3	38577361	38577362	rs10865879	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs10865879-?	NR	9E-14		0.8636133	[0.64-1.09] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38577361	38577362	rs10865879	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs10865879-?	NR	4E-27	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
879	chr3	38577361	38577362	rs10865879	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (Cornell)	up to 58,172 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs10865879-?	NR	8E-7	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
879	chr3	38577361	38577362	rs10865879	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs10865879-?	NR	5E-6	(EA)			Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
879	chr3	38582190	38582191	rs6762565	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	3p22.2	SCN5A	rs6762565-T	0.19	2E-8		1.65	[1.08-2.22] ms decrease	Affymetrix, Illumina [up to 17586686] (imputed)	N
879	chr3	38582570	38582571	rs6767797	32619740	Makarawate P	2020-06-30	Heart Rhythm	Common and rare susceptibility genetic variants predisposing to Brugada Syndrome in Thailand.	Brugada syndrome	154 Thai cases, 432 Thai controls	NA	3p22.2	SCN5A	rs6767797-G	0.56	3E-10	(conditioned on rs10428132)	2.3	[1.70-3.10]	Illumina [5310833] (imputed)	N
879	chr3	38589162	38589163	rs11129795	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs11129795-?	NR	3E-14		0.8833195	[0.66-1.11] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38589162	38589163	rs11129795	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	SCN5A	rs11129795-G	0.77	5E-10	(QRS complex)	8.24	[5.64-10.83] % s.d. decrease	Illumina [306060]	N
879	chr3	38589162	38589163	rs11129795	19305409	Pfeufer A	2009-03-22	Nat Genet	Common variants at ten loci modulate the QT interval duration in the QTSCD Study.	QT interval	15,842 European ancestry individuals	up to 13,602 individuals	3p22.2	SCN5A	rs11129795-A	0.23	5E-14		1.27	[0.82-1.72] ms decrease	Affymetrix, Illumina [2557000] (imputed)	N
879	chr3	38592405	38592406	rs1805126	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs1805126-?	NR	4E-10		0.579369	[0.4-0.76] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38592405	38592406	rs1805126	23463857	Ritchie MD	2013-03-05	Circulation	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	3p22.2	SCN5A	rs1805126-A	0.655	3E-20	(QRS duration - CHARGE)	0.6568	[NR] msec decrease	Illumina [528508]	N
879	chr3	38593392	38593393	rs12053903	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	SCN5A	rs12053903-T	0.72	1E-7	(PR interval)	6.59	[4.16-9.03] % s.d. decrease	Illumina [306060]	N
879	chr3	38593392	38593393	rs12053903	19305408	Newton-Cheh C	2009-03-22	Nat Genet	Common variants at ten loci influence QT interval duration in the QTGEN Study.	QT interval	13,685 European ancestry individuals	15,854 European ancestry individuals	3p22.2	SCN5A	rs12053903-C	0.34	1E-14		1.23	[0.88-1.57] msec decrease	Affymetrix, Illumina [up to 2543686] (imputed)	N
879	chr3	38594972	38594973	rs7638909	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs7638909-G	0.24	3E-8		1.28	[1.17 - 1.40]	Affymetrix, Illumina [6990521] (imputed)	N
879	chr3	38594972	38594973	rs7638909	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	3p22.2	SCN5A	rs7638909-G	0.40	2E-6	(PR interval)	4.8	[2.84-6.76] ms increase	Affymetrix [338049]	N
879	chr3	38599036	38599037	rs6793245	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs6793245-A	0.317	4E-27		1.12	[0.92-1.32] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38607467	38607468	rs62241190	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs62241190-G	0.03	9E-14		1.96	[1.63 - 2.32]	Affymetrix, Illumina [6990521] (imputed)	N
879	chr3	38607467	38607468	rs62241190	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	3p22.2	SCN5A	rs62241190-G	0.04	6E-20		2.46	[1.93-2.99] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	9E-28	(-122 ms)	0.0871831	[0.072-0.103] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	8E-31	(-80 ms)	0.0923036	[0.077-0.108] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	8E-14	(-66 ms)	0.060079	[0.044-0.076] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	7E-37	(-118 ms)	0.101511	[0.086-0.117] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	7E-24	(-76 ms)	0.0808152	[0.065-0.097] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	7E-15	(-40 ms)	0.0625417	[0.047-0.078] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	6E-46	(-104 ms)	0.11369	[0.098-0.129] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	6E-37	(-92 ms)	0.101965	[0.086-0.118] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	6E-20	(-196 ms)	0.0734278	[0.058-0.089] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-8	(32 ms)	0.043885	[0.028-0.059] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-43	(-112 ms)	0.109691	[0.094-0.125] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-39	(-116 ms)	0.10447	[0.089-0.12] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-32	(-120 ms)	0.0939546	[0.078-0.11] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-23	(-192 ms)	0.0795231	[0.064-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-23	(-190 ms)	0.0796049	[0.064-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	5E-21	(-126 ms)	0.0754944	[0.06-0.091] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-45	(-110 ms)	0.112176	[0.097-0.128] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-45	(-108 ms)	0.11206	[0.096-0.128] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-45	(-106 ms)	0.112424	[0.097-0.128] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-36	(-88 ms)	0.101375	[0.086-0.117] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-23	(-188 ms)	0.0797917	[0.064-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-22	(-74 ms)	0.0778148	[0.062-0.094] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	4E-17	(-128 ms)	0.0673488	[0.052-0.083] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-40	(-114 ms)	0.106	[0.09-0.122] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-36	(-90 ms)	0.101044	[0.085-0.117] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-33	(-82 ms)	0.0962519	[0.081-0.112] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-22	(-72 ms)	0.0778765	[0.062-0.094] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-22	(-194 ms)	0.0780964	[0.062-0.094] unit decrease	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-20	(-70 ms)	0.0740081	[0.058-0.09] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	3E-13	(-130 ms)	0.0586066	[0.043-0.074] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	2E-33	(-84 ms)	0.0971372	[0.081-0.113] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	2E-27	(-78 ms)	0.0868553	[0.071-0.103] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	2E-24	(-124 ms)	0.0817556	[0.066-0.097] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	2E-12	(-38 ms)	0.0563971	[0.041-0.072] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	1E-34	(-86 ms)	0.0988385	[0.083-0.115] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs41312411-C	0.854944	1E-16	(-68 ms)	0.0666188	[0.051-0.082] unit increase	Affymetrix [10000000] (imputed)	N
879	chr3	38621236	38621237	rs41312411	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	3p22.2	SCN5A	rs41312411-G	0.15	2E-40		1.9	[1.63-2.17] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
879	chr3	38621236	38621237	rs41312411	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	3p22.2	SCN5A	rs41312411-G	0.15	1E-39	(EA)	1.91	[1.62-2.2] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
879	chr3	38621236	38621237	rs41312411	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3p22.2	SCN5A	rs41312411-G	0.15	1E-11		0.32	[0.23-0.41] unit decrease	Affymetrix [19941912] (imputed)	N
879	chr3	38624252	38624253	rs3922844	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	3p22.2	SCN5A	rs3922844-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
879	chr3	38624252	38624253	rs3922844	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p22.2	SCN5A, SCN10A	rs3922844-C	0.4128	1E-34	(AA)	5.2151	[4.38-6.05] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
879	chr3	38624252	38624253	rs3922844	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	3p22.2	SCN5A	rs3922844-C	0.63	1E-24		1.03	[0.83-1.23] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
879	chr3	38624252	38624253	rs3922844	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	SCN5A	rs3922844-?	NR	5E-26	(Hispanic/Latino)	1.118869	[0.91-1.33] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38624252	38624253	rs3922844	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	SCN5A	rs3922844-?	NR	4E-6	(AA)	1.022938	[0.59-1.46] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38624252	38624253	rs3922844	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	SCN5A	rs3922844-?	NR	2E-31		1.098767	[0.91-1.28] unit increase	Illumina [26566045] (imputed)	N
879	chr3	38624252	38624253	rs3922844	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs3922844-?	NR	1E-48		3.43761	[2.98-3.9] unit increase	Illumina [26703325] (imputed)	N
879	chr3	38624252	38624253	rs3922844	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	3p22.2	SCN5A	rs3922844-T	NR	2E-7		1.18	[1.11-1.26]	Affymetrix, Illumina [NR] (imputed)	N
879	chr3	38624252	38624253	rs3922844	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	3p22.2	SCN5A	rs3922844-T	0.37	1E-15		1.77	[1.34-2.2] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
879	chr3	38624252	38624253	rs3922844	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	3p22.2	SCN5A	rs3922844-T	0.37	4E-41	(Hispanic)	3.39	[2.9-3.88] ms decrease	Affymetrix, Illumina [18828993] (imputed)	N
879	chr3	38624252	38624253	rs3922844	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	3p22.2	SCN5A	rs3922844-T	0.47	3E-14	(AA)	1.66	[1.23-2.09] ms decrease	Affymetrix, Illumina [at least 2402234] (imputed)	N
879	chr3	38624252	38624253	rs3922844	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p22.2	SCN5A	rs3922844-C	0.69	2E-13	(European)	0.56	[0.4-0.72] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
879	chr3	38624252	38624253	rs3922844	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p22.2	SCN5A	rs3922844-C	0.42	4E-14	(African American)	0.94	[0.7-1.18] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
879	chr3	38624252	38624253	rs3922844	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	3p22.2	SCN5A	rs3922844-T	0.58	5E-43		4.54	[3.89-5.19] unit decrease	Affymetrix, Illumina [2845108] (imputed)	N
879	chr3	38624252	38624253	rs3922844	21347284	Smith JG	2011-02-10	PLoS Genet	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	3p22.2	SCN5A	rs3922844-C	0.41	3E-23		5.11	[4.11-6.11] unit increase	Affymetrix [2801419] (imputed)	N
879	chr3	38625708	38625709	rs7374004	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	3p22.2	SCN5A	rs7374004-A	0.65	3E-19	(conditioned on rs3922844 and rs6801957)	2.66	[2.07-3.25] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
879	chr3	38628660	38628661	rs7432532	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	3p22.2	NR	rs7432532-C	0.1029	8E-7		0.2484	[0.15-0.35] unit increase	Illumina [10677593] (imputed)	N
879	chr3	38633922	38633923	rs11708996	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	3p22.2	NR	rs11708996-?	NR	4E-6		1.507803	[0.87-2.15] unit decrease	Illumina [26659972] (imputed)	N
879	chr3	38633922	38633923	rs11708996	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs11708996-?	NR	2E-25		3.747038	[3.04-4.45] unit increase	Illumina [26703325] (imputed)	N
879	chr3	38633922	38633923	rs11708996	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3p22.2	SCN5A	rs11708996-C	0.15	1E-68		3.1	[2.75-3.45] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
879	chr3	38633922	38633923	rs11708996	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs11708996-?	NR	6E-23	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
879	chr3	38633922	38633923	rs11708996	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs11708996-C	0.148	2E-11		0.92	[0.65-1.19] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38633922	38633923	rs11708996	23872634	Bezzina CR	2013-07-21	Nat Genet	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	3p22.2	SCN5A	rs11708996-C	0.15	1E-14		1.73	[1.51-1.99]	Affymetrix [360149]	N
879	chr3	38633922	38633923	rs11708996	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	SCN5A	rs11708996-C	0.16	1E-16		0.79	[0.59-0.99] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38633922	38633923	rs11708996	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	3p22.2	SCN5A	rs11708996-C	0.15	6E-26		3.04	[2.47-3.61] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38634141	38634142	rs7374540	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs7374540-C	0.39	4E-57		1.72	[1.61 - 1.81]	Affymetrix, Illumina [6990521] (imputed)	N
879	chr3	38634141	38634142	rs7374540	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p22.2	SCN10A, SCN5A	rs7374540-A	0.607	7E-12		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
879	chr3	38634141	38634142	rs7374540	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p22.2	SCN5A	rs7374540-A	0.61	2E-8	(EA)	1.04		Affymetrix, Illumina [up to 12149979] (imputed)	N
879	chr3	38648061	38648062	rs6599222	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs6599222-?	NR	1E-12		2.088418	[1.51-2.67] unit decrease	Illumina [26703325] (imputed)	N
879	chr3	38648061	38648062	rs6599222	21347284	Smith JG	2011-02-10	PLoS Genet	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	3p22.2	SCN5A	rs6599222-C	0.23	2E-8		3.4	[2.20-4.60] unit increase	Affymetrix [2801419] (imputed)	N
879	chr3	38657707	38657708	rs7433206	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs7433206-A	0.42	1E-23		1.48	[1.37 - 1.60]	Affymetrix, Illumina [6990521] (imputed)	N
879	chr3	38657898	38657899	rs11710077	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	3p22.2	NR	rs11710077-?	NR	1E-8		1.566325	[1.03-2.1] unit increase	Illumina [26659972] (imputed)	N
879	chr3	38657898	38657899	rs11710077	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs11710077-?	NR	4E-26	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
879	chr3	38657898	38657899	rs11710077	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs11710077-T	0.209	1E-13		0.92	[0.68-1.16] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38657898	38657899	rs11710077	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	SCN5A	rs11710077-T	0.21	6E-22		0.84	[0.66-1.02] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
879	chr3	38665822	38665823	rs7638275	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	3p22.2		rs7638275-A	0.019	2E-17		0.165	[0.13-0.20] bpm increase	Affymetrix [9800000] (imputed)	N
879	chr3	38665822	38665823	rs7638275	32527199	van Duijvenboden S	2020-06-11	Circ Genom Precis Med	Genetic Basis and Prognostic Value of Exercise QT Dynamics.	QT dynamics during exercise	28,449 European ancestry women, 24,412 European ancestry men	NA	3p22.2		rs7638275-A	0.0189236	5E-15	(male)	0.235092	[0.18-0.29] bpm increase	Affymetrix [9800000] (imputed)	N
879	chr3	38665822	38665823	rs7638275	29622589	Tereshchenko LG	2018-04-05	J Am Heart Assoc	Genome-Wide Associations of Global Electrical Heterogeneity ECG Phenotype: The ARIC (Atherosclerosis Risk in Communities) Study and CHS (Cardiovascular Health Study).	Global electrical heterogeneity phenotypes	3,057 Black individuals, 10,769 European ancestry individuals	NA	3p22.2	SCN5A	rs7638275-A	0.02	3E-11	(SAI QRST)	0.3	[0.21-0.39] unit decrease	Affymetrix, Illumina [at least 9117794] (imputed)	N
880	chr3	38671559	38671560	rs45567533	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	3p22.2	SCN5A	rs45567533-A	0.87	1E-11	(conditioned on rs3922844,  rs6801957 and rs7374004)	2.49	[1.76-3.22] ms decrease	Affymetrix, Illumina [18828993] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	7E-31	(-106 ms)	0.0820217	[0.068-0.096] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	6E-24	(-90 ms)	0.0707256	[0.057-0.085] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	5E-31	(-116 ms)	0.0813871	[0.067-0.096] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	5E-22	(-88 ms)	0.0681334	[0.054-0.082] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	5E-17	(-84 ms)	0.0598669	[0.046-0.074] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	4E-32	(-110 ms)	0.0828063	[0.069-0.097] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	4E-27	(-120 ms)	0.0762887	[0.062-0.09] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	4E-10	(-76 ms)	0.0450013	[0.031-0.059] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	2E-30	(-114 ms)	0.0803647	[0.066-0.095] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	2E-30	(-112 ms)	0.0802832	[0.066-0.094] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	2E-30	(-104 ms)	0.0804185	[0.066-0.095] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	2E-26	(-92 ms)	0.0736548	[0.059-0.088] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	1E-8	(-74 ms)	0.0416428	[0.027-0.056] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	1E-32	(-108 ms)	0.0847329	[0.071-0.099] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38676579	38676579	rs572474770	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs572474770-T	0.811413	1E-30	(-118 ms)	0.0810567	[0.067-0.095] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38681393	38681394	rs6763048	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	3p22.2	SCN5A	rs6763048-A	0.73	4E-12	(Conditional)	2.62	[1.88-3.36] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
880	chr3	38683017	38683018	rs34760424	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs34760424-G	0.94	3E-23		2.32	[1.96 - 2.70]	Affymetrix, Illumina [6990521] (imputed)	N
880	chr3	38687225	38687226	rs9856387	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	3p22.2	SCN5A	rs9856387-C	0.73	2E-12		0.76	[0.54-0.98] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
880	chr3	38689241	38689242	rs41310232	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs41310232-A	0.09	1E-15		1.56	[1.40 - 1.74]	Affymetrix, Illumina [6990521] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	9E-18	(242 ms)	0.0474737	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	9E-15	(208 ms)	0.0430586	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	8E-15	(250 ms)	0.0433111	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	7E-18	(214 ms)	0.0474565	[0.036-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	7E-13	(202 ms)	0.040887	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	7E-10	(194 ms)	0.0353097	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	6E-17	(212 ms)	0.0461351	[0.035-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	6E-10	(258 ms)	0.034985	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	5E-9	(260 ms)	0.0333478	[0.022-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	5E-15	(248 ms)	0.0436263	[0.032-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	5E-13	(204 ms)	0.0406457	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	4E-8	(186 ms)	0.0315762	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	4E-18	(234 ms)	0.0484116	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	4E-14	(252 ms)	0.0421757	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	4E-10	(192 ms)	0.0354173	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-8	(188 ms)	0.0311938	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-20	(230 ms)	0.0509205	[0.04-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-18	(240 ms)	0.048179	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-18	(238 ms)	0.0483576	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-18	(226 ms)	0.0485795	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-18	(222 ms)	0.0486868	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-18	(216 ms)	0.0482898	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-16	(244 ms)	0.0455242	[0.034-0.057] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-15	(246 ms)	0.0441026	[0.033-0.055] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-12	(254 ms)	0.0391889	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-11	(198 ms)	0.0386177	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	3E-10	(196 ms)	0.0361042	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-9	(190 ms)	0.0333184	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-8	(184 ms)	0.0319423	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-19	(232 ms)	0.0496523	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-18	(236 ms)	0.0485517	[0.037-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-18	(218 ms)	0.0488865	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-13	(206 ms)	0.0415373	[0.03-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	2E-12	(200 ms)	0.0405217	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	1E-19	(228 ms)	0.0505329	[0.039-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	1E-18	(220 ms)	0.0493843	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	1E-17	(224 ms)	0.0480391	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	1E-15	(210 ms)	0.0448343	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38693444	38693444	rs571037730	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs571037730-TTTTTG	0.562042	1E-10	(256 ms)	0.0363067	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38696552	38696553	rs6782237	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN5A	rs6782237-C	0.68	1E-47		1.74	[1.61 - 1.87]	Affymetrix, Illumina [6990521] (imputed)	N
880	chr3	38699265	38699265	rs76521806	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	3p22.2		rs76521806-A	0.02	7E-8		0.118	[0.075-0.161] unit increase	Affymetrix [NR]	N
880	chr3	38699265	38699265	rs76521806	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	3p22.2		rs76521806-A	0.02	1E-19		0.194	[0.15-0.24] unit increase	Affymetrix [NR]	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	9E-19	(-76 ms)	0.186853	[0.15-0.23] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	9E-12	(-64 ms)	0.144789	[0.1-0.19] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	8E-27	(-84 ms)	0.227306	[0.19-0.27] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	8E-10	(-62 ms)	0.130162	[0.089-0.172] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	7E-9	(-58 ms)	0.12302	[0.081-0.165] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	6E-40	(192 ms)	0.270979	[0.23-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	6E-30	(-88 ms)	0.236444	[0.2-0.28] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	6E-30	(-86 ms)	0.238238	[0.2-0.28] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	6E-26	(-82 ms)	0.222782	[0.18-0.26] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	5E-51	(206 ms)	0.307572	[0.27-0.35] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	5E-17	(-72 ms)	0.177733	[0.14-0.22] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	4E-44	(196 ms)	0.283539	[0.24-0.32] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	4E-24	(-80 ms)	0.21352	[0.17-0.25] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	4E-18	(-74 ms)	0.183895	[0.14-0.23] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	4E-15	(-70 ms)	0.166523	[0.12-0.21] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	3E-32	(-92 ms)	0.244473	[0.2-0.29] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	3E-31	(182 ms)	0.236586	[0.2-0.28] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	3E-29	(-90 ms)	0.23312	[0.19-0.27] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	2E-45	(198 ms)	0.286735	[0.25-0.33] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	2E-25	(174 ms)	0.213874	[0.17-0.25] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	2E-24	(172 ms)	0.208125	[0.17-0.25] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	2E-20	(-78 ms)	0.196102	[0.15-0.24] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	2E-14	(-66 ms)	0.162188	[0.12-0.2] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-9	(-60 ms)	0.128662	[0.087-0.17] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-52	(208 ms)	0.312578	[0.27-0.35] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-48	(204 ms)	0.29962	[0.26-0.34] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-41	(194 ms)	0.276336	[0.24-0.32] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-38	(190 ms)	0.266589	[0.23-0.31] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38699265	38699265	rs76521806	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN5A	rs76521806-A	0.0191355	1E-14	(-68 ms)	0.163238	[0.12-0.2] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38699759	38699760	rs6599232	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	SCN5A	rs6599232-?	NR	2E-13	(Hispanic/Latino)	2.11568	[1.55-2.68] unit increase	Illumina [26703325] (imputed)	N
880	chr3	38699759	38699760	rs6599232	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	SCN5A	rs6599232-?	NR	2E-12		1.927007	[1.39-2.46] unit increase	Illumina [26703325] (imputed)	N
880	chr3	38710314	38710315	rs7373065	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	3p22.2	SCN5A-SCN10A	rs7373065-T	0.019	4E-13		0.14	[0.1-0.18] unit decrease	Affymetrix [~ 9000000] (imputed)	N
880	chr3	38710314	38710315	rs7373065	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	3p22.2	SCN5A	rs7373065-T	0.019	8E-9	(women)	0.155	[0.1-0.21] unit decrease	Affymetrix [~ 9000000] (imputed)	N
880	chr3	38710314	38710315	rs7373065	32386560	Ramirez J	2020-04-29	Am J Hum Genet	Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval.	TPE interval (resting)	71,338 European ancestry individuals	NA	3p22.2	SCN5A	rs7373065-T	0.019	5E-6	(men)	0.126	[0.071-0.181] unit decrease	Affymetrix [~ 9000000] (imputed)	N
880	chr3	38710314	38710315	rs7373065	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	3p22.2	SCN5A, SCN10A	rs7373065-T	0.019	6E-13		0.165	[0.12-0.21] unit increase	NR [~ 9000000] (imputed)	N
880	chr3	38710314	38710315	rs7373065	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	3p22.2	SCN5A, SCN10A	rs7373065-T	0.019	2E-11		0.122	[0.087-0.157] unit increase	NR [~ 9000000] (imputed)	N
880	chr3	38710314	38710315	rs7373065	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p22.2	SCN10A, SCN5A	rs7373065-T	0.049	3E-16		1.23	[1.17-1.29]	Illumina [34740186] (imputed)	N
880	chr3	38710314	38710315	rs7373065	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p22.2	SCN5A, SCN10A	rs7373065-T	0.02	7E-14	(EA)	1.24		Affymetrix, Illumina [up to 12149979] (imputed)	N
880	chr3	38715299	38715300	rs6599234	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	3p22.2	NR	rs6599234-?	NR	2E-6		1.162587	[0.68-1.64] unit decrease	Illumina [26659972] (imputed)	N
880	chr3	38715299	38715300	rs6599234	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs6599234-A	0.324	2E-11		0.7	[0.5-0.9] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr3	38718234	38718235	rs66493370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p22.2	Intergenic	rs66493370-A	0.716	1E-8	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
880	chr3	38719900	38719901	rs9851710	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	QRS duration	2,177 Erasmus Rucphen Family (founder/genetic isolate) individuals, 23,332 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 30,760 European ancestry individuals, 2,048 African American individuals	3p22.2	SCN10A	rs9851710-A	0.654	3E-27		1.011	[0.83-1.19] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
880	chr3	38719934	38719935	rs9851724	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs9851724-?	NR	2E-12		0.7535496	[0.54-0.96] unit increase	Illumina [26566045] (imputed)	N
880	chr3	38719934	38719935	rs9851724	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs9851724-?	NR	7E-25	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
880	chr3	38719934	38719935	rs9851724	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs9851724-C	0.33	2E-20		0.66	[0.52-0.80] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr3	38723216	38723217	rs7633988	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs7633988-?	NR	5E-12		0.7489853	[0.54-0.96] unit increase	Illumina [26566045] (imputed)	N
880	chr3	38723216	38723217	rs7633988	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	QRS duration	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	3p22.2	EXOG, SCN5A, SCN10A	rs7633988-T	0.29	2E-6		0.86	[0.51-1.21] unit decrease	Affymetrix [2100000] (imputed)	N
880	chr3	38750459	38750460	rs112718371	33578652	Adjei AA	2021-02-10	Cancers (Basel)	Genetic Variations and Health-Related Quality of Life (HRQOL): A Genome-Wide Study Approach.	Physical health related quality of life	1,386 European ancestry individuals, 56 individuals	NA	3p22.2	SCN10A	rs112718371-T	0.011	5E-8		17.79	[11.42-24.16] unit decrease	Illumina [7254516] (imputed)	N
880	chr3	38756565	38756566	rs11924846	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p22.2		rs11924846-T	NR	4E-10		0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
880	chr3	38766674	38766675	rs6795970	33580673	Thorolfsdottir RB	2021-02-13	Eur Heart J	Genetic insight into sick sinus syndrome.	Sick sinus syndrome	6,189 European ancestry cases, 931,046 European ancestry controls	280 Norwegian ancestry cases, 69,141 Norwegian ancestry controls	3p22.2	SCN10A	rs6795970-A	0.3578	3E-8		1.12	[1.07-1.16]	Affymetrix, Illumina [NR] (imputed)	N
880	chr3	38766674	38766675	rs6795970	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p22.2		rs6795970-A	0.3961	1E-13		0.11961776	[0.088-0.151] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
880	chr3	38766674	38766675	rs6795970	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QRS duration	3,274 African American individuals, 13,420 Hispanic/Latino individuals, 126 Asian ancestry individuals, 226 Native American ancestry individuals	NA	3p22.2	NR	rs6795970-?	NR	1E-12		0.7424485	[0.54-0.95] unit decrease	Illumina [26566045] (imputed)	N
880	chr3	38766674	38766675	rs6795970	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs6795970-?	NR	1E-46		3.629563	[3.13-4.13] unit decrease	Illumina [26703325] (imputed)	N
880	chr3	38766674	38766675	rs6795970	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	3p22.2	SCN10A	rs6795970-A	0.37444	1E-110		0.752811	[0.69-0.82] ms increase	Illumina [162199]	N
880	chr3	38766674	38766675	rs6795970	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	3p22.2	SCN10A	rs6795970-A	0.398465936591775	9E-67		0.79333365	[0.7-0.88] ms increase	Illumina [213295]	N
880	chr3	38766674	38766675	rs6795970	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	3p22.2	SCN10A	rs6795970-A	0.404	3E-8		0.306	[0.2-0.41] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
880	chr3	38766674	38766675	rs6795970	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	NR	rs6795970-?	NR	9E-39	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
880	chr3	38766674	38766675	rs6795970	23463857	Ritchie MD	2013-03-05	Circulation	Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.	Electrocardiographic conduction measures	5,272 European ancestry indiviudals	40,407 European ancestry individuals	3p22.2	SCN10A	rs6795970-A	0.396	5E-27	(QRS duration - CHARGE)	0.7476	[NR] msec increase	Illumina [528508]	N
880	chr3	38766674	38766675	rs6795970	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	SCN10A	rs6795970-A	0.36	4E-9	(QRS duration)	5.17	[3.46-6.89] % s.d. increase	Illumina [306060]	N
880	chr3	38766674	38766675	rs6795970	20062063	Holm H	2010-01-10	Nat Genet	Several common variants modulate heart rate, PR interval and QRS duration.	Electrocardiographic traits	Up to 12,670 European ancestry individuals	Up to 10,352 European ancestry individuals	3p22.2	SCN10A	rs6795970-A	0.36	1E-58	(PR interval)	14.81	[13.01-16.60] % s.d. increase	Illumina [306060]	N
880	chr3	38766674	38766675	rs6795970	20062061	Chambers JC	2010-01-10	Nat Genet	Genetic variation in SCN10A influences cardiac conduction.	Electrocardiographic traits	6,543 Indian Asian ancestry individuals	6,243 Indian Asian ancestry individuals, 5,370 European ancestry individuals	3p22.2	SCN10A	rs6795970-A	0.36	3E-15	(PR interval)	3.33	[2.51-4.15] ms increase	Illumina [303309]	N
880	chr3	38767314	38767315	rs6801957	35210625	Barc J	2022-02-24	Nat Genet	Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility.	Brugada syndrome	2,820 European ancestry cases, 10,001 European ancestry controls	NA	3p22.2	SCN10A	rs6801957-T	0.42	1E-180		2.49	[2.34 - 2.65]	Affymetrix, Illumina [6990521] (imputed)	N
880	chr3	38767314	38767315	rs6801957	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	70,783 European ancestry individuals	NA	3p22.2		rs6801957-T	0.41	2E-10		0.03	[0.02-0.04] unit increase	Affymetrix [8918919] (imputed)	N
880	chr3	38767314	38767315	rs6801957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p22.2		rs6801957-C	NR	3E-11		0.0642	[0.045-0.083] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	9E-24	(-210 ms)	0.0576441	[0.046-0.069] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	9E-118	(-114 ms)	0.129563	[0.12-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	8E-92	(-178 ms)	0.113909	[0.1-0.13] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	8E-20	(38 ms)	0.0509467	[0.04-0.062] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	8E-129	(-108 ms)	0.135903	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	7E-9	(-18 ms)	0.0334234	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	7E-69	(-162 ms)	0.0982162	[0.087-0.109] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	7E-128	(-110 ms)	0.13453	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	7E-126	(-100 ms)	0.134793	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	7E-123	(-94 ms)	0.133218	[0.12-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-86	(-84 ms)	0.111912	[0.1-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-48	(-74 ms)	0.0833049	[0.072-0.095] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-35	(-70 ms)	0.0706042	[0.059-0.082] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-19	(32 ms)	0.0490503	[0.038-0.06] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-11	(-222 ms)	0.0376084	[0.026-0.049] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	6E-10	(-22 ms)	0.0359181	[0.025-0.047] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	5E-41	(-72 ms)	0.0767799	[0.066-0.088] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	5E-28	(-208 ms)	0.0628986	[0.052-0.074] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	5E-18	(28 ms)	0.0479346	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-96	(-86 ms)	0.117926	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-89	(-184 ms)	0.111434	[0.1-0.12] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-82	(-82 ms)	0.109288	[0.098-0.12] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-8	(-144 ms)	0.0314495	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-69	(-78 ms)	0.099877	[0.089-0.111] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-40	(-154 ms)	0.0758132	[0.065-0.087] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-37	(-204 ms)	0.0729091	[0.062-0.084] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-33	(-206 ms)	0.0687259	[0.057-0.08] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-26	(-66 ms)	0.0606149	[0.049-0.072] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-16	(44 ms)	0.0450835	[0.034-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-128	(-98 ms)	0.1349	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	4E-108	(-90 ms)	0.124972	[0.11-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-93	(-118 ms)	0.115601	[0.1-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-83	(-170 ms)	0.108096	[0.097-0.119] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-58	(-158 ms)	0.0903706	[0.079-0.102] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-42	(-202 ms)	0.0781024	[0.067-0.089] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-19	(40 ms)	0.0502089	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-19	(36 ms)	0.0503	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-18	(30 ms)	0.0480394	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-17	(42 ms)	0.0470347	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-133	(-104 ms)	0.137745	[0.13-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	3E-10	(-20 ms)	0.0373236	[0.026-0.048] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-83	(-186 ms)	0.107881	[0.097-0.119] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-74	(-164 ms)	0.1022	[0.091-0.113] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-62	(-194 ms)	0.0936128	[0.082-0.105] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-56	(-76 ms)	0.0899092	[0.079-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-29	(-68 ms)	0.0645879	[0.053-0.076] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-19	(34 ms)	0.0499437	[0.039-0.061] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-14	(46 ms)	0.0432698	[0.032-0.054] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-13	(-146 ms)	0.0419278	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-126	(-96 ms)	0.134422	[0.12-0.15] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	2E-116	(-92 ms)	0.130043	[0.12-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-80	(-166 ms)	0.106531	[0.095-0.118] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-8	(-224 ms)	0.0328851	[0.022-0.044] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-78	(-80 ms)	0.106744	[0.096-0.118] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-64	(-160 ms)	0.0950974	[0.084-0.106] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-54	(-196 ms)	0.0873077	[0.076-0.099] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-49	(-156 ms)	0.0834342	[0.072-0.095] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-17	(26 ms)	0.0472329	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-17	(-216 ms)	0.0490713	[0.038-0.06] unit increase	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-123	(-112 ms)	0.132648	[0.12-0.14] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-105	(-116 ms)	0.122808	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.39727	1E-101	(-88 ms)	0.12107	[0.11-0.13] unit decrease	Affymetrix [10000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	3p22.2	SCN10A	rs6801957-?	NR	1E-11				Affymetrix, Illumina [22000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p22.2	SCN5A, SCN10A	rs6801957-T	0.3991	6E-634		3.4865	[3.36-3.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p22.2	SCN5A, SCN10A	rs6801957-T	0.3767	6E-45	(Hispanic/Latino)	3.7658	[3.24-4.29] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
880	chr3	38767314	38767315	rs6801957	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p22.2	SCN5A, SCN10A	rs6801957-T	0.1608	5E-13	(AA)	4.1792	[3.04-5.31] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
880	chr3	38767314	38767315	rs6801957	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	QT interval	3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals	NA	3p22.2	NR	rs6801957-?	NR	2E-9		1.312338	[0.88-1.74] unit increase	Illumina [26659972] (imputed)	N
880	chr3	38767314	38767315	rs6801957	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs6801957-?	NR	1E-59		3.882729	[3.42-4.35] unit decrease	Illumina [26703325] (imputed)	N
880	chr3	38767314	38767315	rs6801957	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	3p22.2	SCN10A	rs6801957-C	0.584	5E-107		4.062	[3.7-4.42] unit decrease	Affymetrix, Illumina [at least 19000000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p22.2	SCN10A	rs6801957-T	0.4084	5E-14		0.1315	[0.097-0.166] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	29127183	Seyerle AA	2017-11-10	Heart	Genome-wide association study of PR interval in Hispanics/Latinos identifies novel locus at ID2.	PR interval	14,756 Hispanic individuals	4,296 European ancestry individuals, 3,763 African American individuals, 6,805 East Asian ancestry individuals	3p22.2	SCN10A	rs6801957-T	0.38	1E-55	(Hispanic)	3.9	[3.41-4.39] ms increase	Affymetrix, Illumina [18828993] (imputed)	N
880	chr3	38767314	38767315	rs6801957	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p22.2	SCN10A	rs6801957-?	NR	7E-40	(EA)	0.77	[0.65-0.89] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
880	chr3	38767314	38767315	rs6801957	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T	0.41	1E-28	(European)	0.77	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
880	chr3	38767314	38767315	rs6801957	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p22.2	SCN10A	rs6801957-T		2E-30		0.73	[0.61-0.85] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
880	chr3	38767314	38767315	rs6801957	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	3p22.2	SCN10A	rs6801957-T	0.218	3E-7	(PR)	3.012	[NR] unit increase	Illumina [~ 2500000]	N
880	chr3	38767314	38767315	rs6801957	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p22.2	SCN5A, SCN10A	rs6801957-T	0.403	1E-10		0.63	[0.43-0.83] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	PR segment duration	16,468 European ancestry individuals	NA	3p22.2	SCN5A, SCN10A	rs6801957-T	0.429	7E-41		2.935	[2.51-3.36] unit increase	Illumina [2300000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	24850809	Verweij N	2014-05-21	Circ Cardiovasc Genet	Genetic determinants of P wave duration and PR segment.	P wave duration	16,468 European ancestry individuals	NA	3p22.2	SCN5A, XYLB, SCN10A, ACVR2B, EXOG	rs6801957-T	0.43	8E-27		1.436	[1.17-1.70] unit increase	Illumina [2300000] (imputed)	N
880	chr3	38767314	38767315	rs6801957	23139255	Butler AM	2012-11-08	Circ Cardiovasc Genet	Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts.	PR interval	13,415 African American individuals	NA	3p22.2	SCN10A	rs6801957-T	0.27	9E-9	(Conditional)	3.36	[2.22-4.50] unit increase	Affymetrix, Illumina [2845108] (imputed)	N
880	chr3	38767314	38767315	rs6801957	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p22.2	SCN10A	rs6801957-T	0.41	1E-28		0.77	[0.63-0.91] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr3	38770638	38770639	rs7433306	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs7433306-?	NR	3E-47		3.639143	[3.14-4.13] unit decrease	Illumina [26703325] (imputed)	N
880	chr3	38770638	38770639	rs7433306	25035420	Hong KW	2014-07-17	Hum Mol Genet	Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.	PR interval	6,085 Korean ancestry individuals	7,295 Japanese ancestry individuals	3p22.2	EXOG, SCN5A, SCN10A	rs7433306-C	0.15	1E-14		4.33	[3.23-5.43] unit increase	Affymetrix [2100000] (imputed)	N
880	chr3	38771924	38771925	rs6790396	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p22.2	SCN10A, SCN5A	rs6790396-G	0.596	2E-20		1.06	[1.05-1.08]	Illumina [34740186] (imputed)	N
880	chr3	38771924	38771925	rs6790396	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p22.2	SCN10A	rs6790396-G	0.61	4E-18		1.07	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
880	chr3	38771924	38771925	rs6790396	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p22.2	SCN10A	rs6790396-G	0.59	6E-15	(EA)	1.06	[1.05-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
880	chr3	38771924	38771925	rs6790396	28794112	Christophersen IE	2017-08-01	Circ Cardiovasc Genet	Fifteen Genetic Loci Associated With the Electrocardiographic P Wave.	P wave duration	37,678 European ancestry individuals, 6,778 African ancestry individuals	NA	3p22.2	SCN10A	rs6790396-C	0.41	2E-39	(EA)	1.22	[1.04-1.4] ms increase	Affymetrix, Illumina [at least 2402234] (imputed)	N
880	chr3	38773804	38773805	rs9809798	34753499	Hanscombe KB	2021-11-09	Genome Med	The genetic case for cardiorespiratory fitness as a clinical vital sign and the routine prescription of physical activity in healthcare.	Cardiorespiratory fitness (vo2 max)	34,419 European ancestry men	NA	3p22.2		rs9809798-A	0.47	2E-8		0.04	[0.026-0.054] unit increase	Affymetrix [8918919] (imputed)	N
880	chr3	38774831	38774832	rs6800541	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs6800541-?	NR	1E-47		3.654998	[3.16-4.15] unit decrease	Illumina [26703325] (imputed)	N
880	chr3	38774831	38774832	rs6800541	21041692	Denny JC	2010-11-01	Circulation	Identification of genomic predictors of atrioventricular conduction: using electronic medical records as a tool for genome science.	Atrioventricular conduction	2,334 European ancestry individuals	NA	3p22.2	SCN10A	rs6800541-C	0.41	5E-7		2.6	[1.62-3.70] ms increase	Illumina [514999]	N
880	chr3	38774831	38774832	rs6800541	20062060	Pfeufer A	2010-01-10	Nat Genet	Genome-wide association study of PR interval.	PR interval	28,517 European ancestry individuals	NA	3p22.2	SCN10A	rs6800541-C	0.40	2E-74		3.77	[3.37-4.17] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
880	chr3	38777553	38777554	rs10428132	32619740	Makarawate P	2020-06-30	Heart Rhythm	Common and rare susceptibility genetic variants predisposing to Brugada Syndrome in Thailand.	Brugada syndrome	154 Thai cases, 432 Thai controls	NA	3p22.2	SCN5A, SCN10A	rs10428132-T	0.21	3E-10		2.4	[1.80-3.10]	Illumina [5310833] (imputed)	N
880	chr3	38777553	38777554	rs10428132	31251759	Swenson BR	2019-06-28	PLoS One	GWAS of QRS duration identifies new loci specific to Hispanic/Latino populations.	QRS duration	15,124 Hispanic or Latin American individuals	NA	3p22.2	SCN10A	rs10428132-T	0.38	1E-15		0.79	[0.59-0.99] ms increase	Affymetrix, Illumina [~ 21000000] (imputed)	N
880	chr3	38777553	38777554	rs10428132	23872634	Bezzina CR	2013-07-21	Nat Genet	Common variants at SCN5A-SCN10A and HEY2 are associated with Brugada syndrome, a rare disease with high risk of sudden cardiac death.	Brugada syndrome	312 European ancestry cases, 1,115 European ancestry controls	594 European ancestry cases, 806 European ancestry controls, 208 Japanese ancestry cases, 1,1016 Japanese controls	3p22.2	SCN10A	rs10428132-T	0.41	1E-68		2.55	[2.30-2.84]	Affymetrix [360149]	N
880	chr3	38778617	38778618	rs7428232	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise (MTAG)	51,574 European ancestry individuals	NA	3p22.2	SCN5A, SCN10A	rs7428232-T	0.416	2E-11		0.038	[0.026-0.05] unit decrease	NR [~ 9000000] (imputed)	N
880	chr3	38778617	38778618	rs7428232	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during exercise	51,574 European ancestry individuals	NA	3p22.2	SCN5A, SCN10A	rs7428232-T	0.416	4E-9		0.033	[0.021-0.045] unit decrease	NR [~ 9000000] (imputed)	N
880	chr3	38784028	38784029	rs6599250	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3p22.2	SCN10A	rs6599250-T	0.41	4E-242		3.8	[3.58-4.02] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
880	chr3	38784956	38784957	rs7433723	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	3p22.2	SCN10A	rs7433723-G	0.42	5E-8		0.335	[0.22-0.45] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
880	chr3	38785808	38785809	rs6599251	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.2	SCN10A	rs6599251-T	0.5548	1E-10		0.1241	[0.086-0.162] mmHg decrease	Affymetrix [NR] (imputed)	N
880	chr3	38796414	38796415	rs6599255	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3p22.2	NR	rs6599255-C	0.59	2E-10		0.27	[0.19-0.35] unit increase	Affymetrix [19941912] (imputed)	N
881	chr3	38798835	38798836	rs6798015	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	PR interval	3,360 African American individuals, 13,702 Hispanic/Latino individuals, 129 Asian ancestry individuals, 231 Native American ancestry individuals	NA	3p22.2	NR	rs6798015-?	NR	7E-49		3.589204	[3.11-4.07] unit decrease	Illumina [26703325] (imputed)	N
881	chr3	38798835	38798836	rs6798015	21347284	Smith JG	2011-02-10	PLoS Genet	Genome-wide association studies of the PR interval in African Americans.	PR interval	6,247 African American individuals	2,022 African American individuals	3p22.2	SCN10A	rs6798015-C	0.14	2E-12		4.98	[3.61-6.35] unit increase	Affymetrix [2801419] (imputed)	N
881	chr3	38843646	38843647	rs11717455	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	3p22.2	SCN10A	rs11717455-T	0.93	7E-6		1.4085		Illumina [2100739] (imputed)	N
881	chr3	38845380	38845381	rs9827945	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Supraventricular ectopy	1,618 European ancestry cases, 20,899 European ancestry controls, 652 African ancestry cases, 8,622 African ancestry controls, 354 Hispanic/Latino ancestry cases, 10,831 Hispanic/Latino ancestry controls	NA	3p22.2	intergenic	rs9827945-C	NR	9E-7		1.21	[1.12-1.31]	Affymetrix, Illumina [NR] (imputed)	N
881	chr3	38868352	38868353	rs13065560	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	3p22.2	NR	rs13065560-G		9E-6		0.1066	[0.06-0.154] SD units increase	NR [10700000] (imputed)	N
881	chr3	38882518	38882519	rs4453791	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	3p22.2	XIRP1, WDR48, GORASP1, TTC21A, CSRNP1, SCN11A	rs4453791-C	0.13	9E-9	(Age 17)	0.23	[0.15-0.31] unit increase	Illumina [2293137] (imputed)	N
881	chr3	38886412	38886413	rs3923518	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	3p22.2	intergenic	rs3923518-A	0.25	8E-6		1.06	[1.03-1.09]	Affymetrix, Illumina [~ 2300000] (imputed)	N
881	chr3	38923032	38923033	rs74833943	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	3p22.2	NR	rs74833943-?		3E-6		9.7351	[5.69-13.78] unit increase	NR [NR] (imputed)	N
882	chr3	39004161	39004162	rs114751725	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p22.2	SCN11A	rs114751725-A	NR	9E-6	(adjusted for subcutaneous fat)	0.208	[0.12-0.3] unit decrease	Illumina [8511049] (imputed)	N
882	chr3	39055316	39055317	rs883565	24065183	Armour JA	2013-09-25	Heredity (Edinb)	Genome-wide association study of handedness excludes simple genetic models.	Handedness	263 European ancestry left-handed individuals, 2,092 European ancestry right-handed individuals	NA	3p22.2	intergenic	rs883565-?	NR	3E-7				Illumina [2535688] (imputed)	N
883	chr3	39072288	39072289	rs184420639	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	3p22.2	NR	rs184420639-?	NR	3E-6		0.821694	[0.48-1.16] unit increase	NR [13958389] (imputed)	N
883	chr3	39076187	39076188	rs6796837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p22.2		rs6796837-T	0.305419	3E-19		0.021915322	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
883	chr3	39116679	39116681	rs143321598	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	3p22.2	WDR48	rs143321598-CT	0.488259	4E-8		0.0382859	[0.025-0.052] unit decrease	Affymetrix [9463307] (imputed)	N
883	chr3	39145185	39145186	rs7629643	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p22.2		rs7629643-?	NR	3E-8				NR [~ 8900000] (imputed)	N
883	chr3	39177401	39177402	rs111231532	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p22.2	TTC21A, XIRP1, CX3CR1, CSRNP1	rs111231532-C	0.03	5E-8	(EA)	0.2659	[0.17-0.36] unit increase	Illumina [~ 9000000] (imputed)	N
883	chr3	39177401	39177402	rs111231532	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p22.2	TTC21A, CSRNP1, XIRP1, CX3CR1	rs111231532-C	0.03	3E-7		0.2482	[0.15-0.34] unit increase	Illumina [~ 9000000] (imputed)	N
883	chr3	39187857	39187858	rs13084317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p22.2		rs13084317-A	NR	6E-11		0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
883	chr3	39187857	39187858	rs13084317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p22.2	CSRNP1	rs13084317-A	0.329765	3E-13		0.017445486	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
883	chr3	39187857	39187858	rs13084317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p22.2	CSRNP1	rs13084317-A	0.329748	2E-12		0.016756056	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
883	chr3	39187857	39187858	rs13084317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs13084317-A	0.279529	7E-16				Affymetrix, Illumina [24588908] (imputed)	N
883	chr3	39187857	39187858	rs13084317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p22.2	NR	rs13084317-A	0.328961	1E-17		0.016667	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
883	chr3	39188181	39188182	rs13084580	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	3p22.2	NR	rs13084580-T	0.117013	2E-13		0.0244	[0.018-0.031] unit increase	Affymetrix [23037915] (imputed)	N
883	chr3	39188181	39188182	rs13084580	33345186	Li S	2020-10-28	Brain Commun	The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages.	Brain-derived neurotrophic factor levels	11,785 European ancestry individuals	NA	3p22.2	CSRNP1	rs13084580-T	0.1122	6E-11		6.55	NR z score decrease	Affymetrix, Illumina [9950208] (imputed)	N
884	chr3	39191028	39191029	rs1274963	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	3p22.2	CSRNP1	rs1274963-T	0.208	2E-7		1.18	[1.11-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
884	chr3	39191334	39191335	rs1274961	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	3p22.2		rs1274961-T	0.21714	3E-9		0.0296721	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
884	chr3	39195259	39195260	rs784504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p22.2	NR	rs784504-C	0.811469	4E-14		0.00744633	[0.0054-0.0095] unit increase	Affymetrix [16582909] (imputed)	N
884	chr3	39195259	39195260	rs784504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p22.2	NR	rs784504-C	0.811877	2E-12		0.0104602	[0.0074-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
884	chr3	39195259	39195260	rs784504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p22.2	NR	rs784504-C	0.811469	2E-10		0.00703452	[0.0047-0.0094] unit increase	Affymetrix [16582965] (imputed)	N
884	chr3	39195259	39195260	rs784504	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p22.2	NR	rs784504-C	0.811877	2E-8		0.00950635	[0.0059-0.0131] unit increase	Affymetrix [16585866] (imputed)	N
884	chr3	39195963	39195964	rs2280630	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	3p22.2	AXUD1, TTC21A	rs2280630-T	0.32	3E-6	(PAR-dr, EA)			Affymetrix, Illumina [NR] (imputed)	N
884	chr3	39195963	39195964	rs2280630	25648963	Debette S	2014-11-25	Biol Psychiatry	Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.	Verbal declarative memory	Up to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals	Up to 10,617 European ancestry individuals, up to 3,811 African American individuals	3p22.2	AXUD1, TTC21A	rs2280630-T	0.32	2E-6	(PAR-dr)			Affymetrix, Illumina [NR] (imputed)	N
884	chr3	39214255	39214256	rs4676609	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p22.2	XIRP1	rs4676609-C	0.803551	1E-9		0.0150331	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
884	chr3	39237189	39237190	rs4676482	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p22.2	Intergenic	rs4676482-?	NR	3E-6		1.5151515	[NR]	Affymetrix [492217] (imputed)	N
884	chr3	39237474	39237475	rs9880479	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	3p22.2	NR	rs9880479-?	NR	4E-7		0.0751	[0.046-0.104] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
884	chr3	39270187	39270187	rs531407307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p22.2		rs531407307-AT	0.288488	2E-10		0.01608221	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39270187	39270187	rs531407307	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p22.2		rs531407307-AT	0.288532	1E-11		0.016993206	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39285191	39285192	rs4276125	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p22.2	CX3CR1, XIRP1, CCR8, CSRNP1	rs4276125-A	NR	8E-6	(daytime napping duration, weekdays)	0.1155	[0.065-0.166] unit decrease	Affymetrix [7141204] (imputed)	N
884	chr3	39293756	39293757	rs9823718	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.2		rs9823718-G	0.13188	8E-29		0.4083	[0.34-0.48] unit decrease	Illumina [18203344] (imputed)	N
884	chr3	39293756	39293757	rs9823718	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16-	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.2		rs9823718-G	0.13188	3E-9		0.2149	[0.14-0.29] unit decrease	Illumina [18203344] (imputed)	N
884	chr3	39293756	39293757	rs9823718	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14+ CD16- monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.2		rs9823718-G	0.13188	6E-29		0.4122	[0.34-0.48] unit decrease	Illumina [18203344] (imputed)	N
884	chr3	39293756	39293757	rs9823718	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14+ CD16+ monocyte	3,579 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.2		rs9823718-G	0.13201	5E-19		0.3271	[0.26-0.4] unit decrease	Illumina [18198165] (imputed)	N
884	chr3	39297237	39297238	rs184012084	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16+ monocyte	3,582 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.2		rs184012084-A	0.01808	2E-15		0.7112	[0.54-0.89] unit increase	Illumina [18196992] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p22.2		rs3732378-A	NR	2E-10		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p22.2		rs3732378-A	NR	2E-66		0.0504	[0.045-0.056] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p22.2		rs3732378-A	NR	1E-20		0.028	[0.022-0.034] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p22.2		rs3732378-G	0.827	1E-9				Affymetrix [10369434] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p22.2		rs3732378-G	0.827	8E-32				Affymetrix [10369434] (imputed)	N
884	chr3	39307161	39307162	rs3732378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p22.2		rs3732378-G	0.827	8E-14				Affymetrix [10369434] (imputed)	N
884	chr3	39307161	39307162	rs3732378	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	CX3CL1 levels	21,758 European ancestry individuals	9,173 individuals	3p22.2		rs3732378-A	0.17	8E-11		0.0864	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.173006	3E-14		0.022176242	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.172999	9E-20		0.026606126	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.17301	6E-53		0.045045283	[0.039-0.051] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.172989	8E-83		0.05658342	[0.051-0.062] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.173025	1E-11		0.019828863	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.173033	5E-33		0.034908507	[0.029-0.041] unit increase	Affymetrix [93095623] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.142533	6E-15				Affymetrix, Illumina [24649327] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.172487	8E-17		0.020274	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.150728	5E-108				Affymetrix, Illumina [23467995] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.172671	1E-108		0.054543	[0.05-0.059] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.150817	2E-41				Affymetrix, Illumina [23472807] (imputed)	N
884	chr3	39307161	39307162	rs3732378	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p22.2	NR	rs3732378-A	0.17271	3E-44		0.034802	[0.03-0.04] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
884	chr3	39307161	39307162	rs3732378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p22.2		rs3732378-?	NR	7E-14				NR [~ 8900000] (imputed)	N
884	chr3	39307161	39307162	rs3732378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.1737	1E-24		0.0479132	[0.039-0.057] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr3	39307161	39307162	rs3732378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.1738	6E-32		0.0552376	[0.046-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr3	39307161	39307162	rs3732378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.1738	5E-10		0.02942831	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
884	chr3	39307161	39307162	rs3732378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p22.2	CX3CR1	rs3732378-A	0.1736	2E-25		0.04903247	[0.04-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
884	chr3	39319999	39320000	rs11720041	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3p22.2	CX3CR1	rs11720041-T	0.166	1E-10		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
885	chr3	39336037	39336038	rs57938373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3p22.2		rs57938373-?	NR	5E-11				NR [~ 8900000] (imputed)	N
885	chr3	39343521	39343522	rs2853704	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	3p22.1	CX3CR1	rs2853704-?	NR	7E-10		0.0027	[0.0017-0.0037] unit increase	Affymetrix [21347608] (imputed)	N
885	chr3	39343521	39343522	rs2853704	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	3p22.1	CX3CR1	rs2853704-?	NR	1E-9		0.0047	[0.0031-0.0063] unit increase	Affymetrix [21347608] (imputed)	N
885	chr3	39357106	39357107	rs11714050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3p22.1		rs11714050-G	NR	3E-11		0.0848	[0.06-0.11] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
885	chr3	39357106	39357107	rs11714050	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3p22.1	CCR8	rs11714050-G	0.126095	4E-11		0.09051645	[0.064-0.117] unit increase	Affymetrix [7288503] (imputed)	N
885	chr3	39358756	39358757	rs2649748	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p22.1	NR	rs2649748-C	NR	3E-9		0.0272	[0.018-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
885	chr3	39360764	39360765	rs2649749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p22.1		rs2649749-A	NR	1E-8		0.0254	[0.017-0.034] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
885	chr3	39360764	39360765	rs2649749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p22.1		rs2649749-A	NR	2E-9		0.0262	[0.018-0.035] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
885	chr3	39361043	39361044	rs145032667	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (maths)	6,017 European ancestry adolescents	NA	3p22.1	NR	rs145032667-T	NR	9E-6		0.31	[0.17-0.45] unit increase	Illumina [6319684] (imputed)	N
886	chr3	39472628	39472629	rs56055643	31155012	Nakahara S	2019-06-03	Psychol Med	Dentate gyrus volume deficit in schizophrenia.	Dentate gyrus volume x schizophrenia interaction	88 European ancestry cases, 22 Black or African American cases, 18 Asian ancestry cases, 1 American Indian or Alaskan Native ancestry case, 1 Native Hawaiian or Pacific Islander ancestry case, 111 European ancestry controls, 18 Black or African American controls, 13 Asian ancestry controls, 2 American Indian or Alaskan Native ancestry controls, 1 Native Hawaiian or Pacific Islander ancestry control	NA	3p22.1	MOBP, RPSA	rs56055643-A	0.4	5E-8		10.75	[7.0-14.5] unit increase	Illumina [12049533] (imputed)	N
886	chr3	39475341	39475342	rs17038828	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p22.1	NR	rs17038828-C	0.979741981275078	8E-6	(IGP30)	0.56	[0.31-0.81] unit decrease	Illumina [~ 2500000] (imputed)	N
886	chr3	39479610	39479611	rs142003765	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	3p22.1	NR	rs142003765-?		5E-8	(Average across all tracts)			NR [8955960] (imputed)	N
886	chr3	39479610	39479611	rs142003765	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	3p22.1	NR	rs142003765-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
886	chr3	39489650	39489651	rs533577	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3p22.1	NR	rs533577-T	0.4947	2E-14	(average)	0.003811712	[0.0028-0.0048] unit decrease	Affymetrix, Illumina [NR]	N
886	chr3	39490095	39490096	rs2887901	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p22.1		rs2887901-G	0.48	3E-27		10.81	z score increase	Affymetrix [9061022] (imputed)	N
886	chr3	39492245	39492246	rs11706071	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p22.1	NR	rs11706071-A	0.4998	3E-9				NR [9056863] (imputed)	N
886	chr3	39492245	39492246	rs11706071	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p22.1	NR	rs11706071-?		2E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
886	chr3	39508967	39508968	rs631312	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls, 2,407 East Asian ancestry cases, 11,775 East Asian ancestry controls	NA			rs631312-G	NR	3E-12		0.08	[0.058-0.102] unit increase	Illumina [10461755] (imputed)	N
886	chr3	39508967	39508968	rs631312	34873335	van Rheenen W	2021-12-06	Nat Genet	Common and rare variant association analyses in amyotrophic lateral sclerosis identify 15 risk loci with distinct genetic architectures and neuron-specific biology.	Amyotrophic lateral sclerosis	27,205 European ancestry cases, 110,881 European ancestry controls	NA	3p22.1		rs631312-G	0.291	5E-11		0.079	[0.055-0.103] unit increase	Illumina [10461755] (imputed)	N
886	chr3	39510286	39510286	rs10675541	30089514	Chen JA	2018-08-08	Mol Neurodegener	Joint genome-wide association study of progressive supranuclear palsy identifies novel susceptibility loci and genetic correlation to neurodegenerative diseases.	Progressive supranuclear palsy	1,646 European ancestry cases, 10,662 European ancestry controls	NA	3p22.1	MOBP	rs10675541-?		7E-19				Illumina [6419662] (imputed)	N
886	chr3	39510516	39510517	rs13067055	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p22.1	MOBP	rs13067055-A	0.3506	2E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix [18391927] (imputed)	N
886	chr3	39510654	39510655	rs28810495	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p22.1	NR	rs28810495-G	0.2901	2E-12				NR [9056863] (imputed)	N
886	chr3	39512550	39512551	rs13079368	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p22.1	AL162431.1, STX6, MR1, IER5	rs13079368-?		6E-11				NR [7428630] (imputed)	N
886	chr3	39512550	39512551	rs13079368	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p22.1	MOBP	rs13079368-?		3E-11				NR [7428630] (imputed)	N
886	chr3	39512550	39512551	rs13079368	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3p22.1	NR	rs13079368-?		4E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
886	chr3	39513277	39513278	rs538867	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		3p22.1	MOBP	rs538867-?	0.03	1E-7		0.26	unit decrease	Illumina [NR] (imputed)	N
886	chr3	39523002	39523003	rs1768208	26077951	Kouri N	2015-06-16	Nat Commun	Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy.	Corticobasal degeneration	152 cases, 3,111 controls	67 cases, 457 controls	3p22.1	MOBP	rs1768208-?	NR	2E-7		1.71	[NR]	Illumina [533898] (imputed)	N
886	chr3	39523002	39523003	rs1768208	21685912	Hoglinger GU	2011-06-19	Nat Genet	Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy.	Progressive supranuclear palsy	1,069 European ancestry cases, 2,958 European ancestry controls, 45 cases, 329 controls	1,051 European ancestry cases, 3,560 European ancestry controls	3p22.1	MOBP	rs1768208-?	0.71	5E-17		1.37	[1.28-1.49]	Illumina [531451]	N
886	chr3	39534480	39534481	rs616147	28931804	Benyamin B	2017-09-20	Nat Commun	Cross-ethnic meta-analysis identifies association of the GPX3-TNIP1 locus with amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis (sporadic)	1,234 Chinese ancestry cases, 2,850 Chinese ancestry controls, 12,577 European ancestry cases, 23,475 European ancestry controls	576 cases, 683 controls	3p22.1	MOBP	rs616147-?	NR	2E-8		0.02	[0.013-0.027] unit increase	Illumina [at least 6613544] (imputed)	N
886	chr3	39534480	39534481	rs616147	27455348	van Rheenen W	2016-07-25	Nat Genet	Genome-wide association analyses identify new risk variants and the genetic architecture of amyotrophic lateral sclerosis.	Amyotrophic lateral sclerosis	12,577 European ancestry cases, 23,475 European ancestry controls	2,579 European ancestry cases, 2,767 European ancestry controls	3p22.1	MOBP	rs616147-?	0.28	4E-10		1.1	[1.07-1.14]	Illumina [8697640] (imputed)	N
886	chr3	39540913	39540914	rs9854526	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs9854526-T	0.01394	4E-9	(NNT)	0.4346	NR unit increase	Illumina [1671387] (imputed)	N
886	chr3	39553787	39553788	rs816488	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3p22.1	MOBP	rs816488-?	0.04479	4E-6	(IED)			Illumina [475971]	N
886	chr3	39555579	39555580	rs864643	18839057	Lesch KP	2008-10-07	J Neural Transm (Vienna)	Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.	Attention deficit hyperactivity disorder	343 European ancestry cases, 250 European ancestry controls, 54 controls	NA	3p22.1	MOBP	rs864643-?	NR	1E-8				Affymetrix [504219]	N
887	chr3	39630072	39630073	rs77121946	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	3p22.1		rs77121946-?	NR	7E-6		0.2008		Illumina [5932083] (imputed)	N
887	chr3	39697863	39697864	rs139034117	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p22.1	intergenic	rs139034117-?	NR	3E-6		0.178	[0.086-0.27] unit decrease	Illumina [at least 13000000] (imputed)	N
887	chr3	39707425	39707426	rs76968955	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	3p22.1		rs76968955-?	NR	9E-6		0.2063		Illumina [5932083] (imputed)	N
888	chr3	39749592	39749593	rs9832461	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	3p22.1	intergenic	rs9832461-A	0.24	4E-6		3785.6	[NR] unit increase	Illumina [546314]	N
888	chr3	39776887	39776888	rs191740612	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count	16,201 African American or Afro-Caribbean individuals	NA	3p22.1		rs191740612-A	0.0174	5E-6		0.2101	[0.12-0.3] unit increase	Affymetrix, Illumina [NR] (imputed)	N
888	chr3	39788890	39788891	rs6764132	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Thrombomodulin levels in ischemic stroke	up to 1,725 European ancestry cases, up to 258 African ancestry cases, up to 117 cases	NA	3p22.1	NR	rs6764132-?	NR	9E-7				Illumina [7500450] (imputed)	N
889	chr3	39847071	39847072	rs17079534	23007406	Yang JJ	2012-09-24	Blood	Genome-wide association study identifies germline polymorphisms associated with relapse of childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	1,268 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	1,267 European, South Asian, East Asian, African American/Afro-Caribbean, Hispanic and other ancestry cases	3p22.1	MYRIP	rs17079534-A	0.005	2E-7		4.07	[2.40-6.87]	Affymetrix [444044]	N
889	chr3	39879717	39879718	rs146100088	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p22.1		rs146100088-?	NR	7E-8		1.455542	[0.93-1.98] unit increase	Illumina [9875426] (imputed)	N
889	chr3	39948977	39948978	rs9862276	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3p22.1	MYRIP	rs9862276-C	0.915131429	8E-6		0.257963	[0.14-0.37] unit increase	Illumina [6952813] (imputed)	N
890	chr3	39977215	39977216	rs7648951	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p22.1	NR	rs7648951-?	NR	5E-8				Illumina [7760689] (imputed)	N
890	chr3	39992222	39992223	rs112364629	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p22.1	NR	rs112364629-?	NR	6E-7		0.4197	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
890	chr3	40001092	40001093	rs7637714	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	3p22.1	intergenic	rs7637714-A	0.3283	4E-6		0.0331	[0.019-0.047] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
890	chr3	40008633	40008634	rs9985399	21130836	Luciano M	2010-12-03	Biol Psychol	Whole genome association scan for genetic polymorphisms influencing information processing speed.	Information processing speed	Up to 4,039 European ancestry individuals	NA	3p22.1	MYRIP	rs9985399-T	0.05	9E-6	(simple RT)	0.26	[0.14-0.38] unit decrease	Illumina [~ 610000]	N
890	chr3	40074931	40074932	rs4420803	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	3p22.1	NR	rs4420803-?	NR	3E-6		0.2114	[0.12-0.3] unit decrease	Illumina [at least 560000] (imputed)	N
890	chr3	40096617	40096618	rs6599077	17903308	Gottlieb DJ	2007-09-19	BMC Med Genet	Genome-wide association of sleep and circadian phenotypes.	Sleep-related phenotypes	up to 738 individuals from 203 families	NA	3p22.1	MYRIP	rs6599077-?	NR	1E-7	(Sleep duration)			Affymetrix [70897]	N
891	chr3	40128423	40128424	rs17075541	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	3p22.1		rs17075541-T	0.2	6E-6		0.59	unit increase	Affymetrix [NR] (imputed)	N
891	chr3	40231882	40231883	rs1317317	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p22.1	NR	rs1317317-C	0.071	5E-6	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
892	chr3	40277152	40277153	rs17076962	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p22.1	MYRIP, EIF1B-AS1	rs17076962-?		7E-6				Illumina [4322238] (imputed)	N
893	chr3	40380155	40380156	rs189298483	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3p22.1	ENTPD3, RPL14, ZNF619, ZNF620, ZNF621	rs189298483-A	0.0033443	2E-8		5.611	z score increase	Illumina [18485882] (imputed)	N
893	chr3	40451934	40451934	rs11371152	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p22.1	ENTPD3-AS1, ENTPD3	rs11371152-GA	0.28369	2E-9		0.015394604	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
893	chr3	40457083	40457084	rs9822909	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.1	NR	rs9822909-?	NR	3E-6				Affymetrix [NR]	N
894	chr3	40513962	40513963	rs752476895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.1		rs752476895-C	0.012	1E-8		0.6747	[0.44-0.91] unit decrease	Illumina [18203344] (imputed)	N
894	chr3	40513962	40513963	rs752476895	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14+ CD16- monocyte	3,590 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.1		rs752476895-C	0.012	2E-8		0.6759	[0.44-0.91] unit decrease	Illumina [18203344] (imputed)	N
894	chr3	40533242	40533243	rs67311347	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	3p22.1	intergenic	rs67311347-G	0.69	3E-8		1.11		Illumina [7437091] (imputed)	N
896	chr3	40798911	40798912	rs115082929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	Intergenic	rs115082929-G	0.996	3E-6	(AA)	0.143	unit increase	Illumina [NR] (imputed)	N
896	chr3	40798911	40798912	rs115082929	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	Intergenic	rs115082929-G	0.996	2E-6	(AA)	0.735	NR unit increase	Illumina [NR] (imputed)	N
897	chr3	40914587	40914588	rs11707109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	3p22.1		rs11707109-G	NR	2E-10		0.0892	[0.062-0.117] unit increase	Affymetrix, Illumina [20457468] (imputed)	N
897	chr3	40915238	40915239	rs35470271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFA5	5,367 Icelandic ancestry individuals	NA	3p22.1		rs35470271-G	0.1593	3E-17		0.212731	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
897	chr3	40915238	40915239	rs35470271	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	3p22.1	NR	rs35470271-G	NR	2E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [> 10000000] (imputed)	N
897	chr3	40915238	40915239	rs35470271	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3p22.1	CTNNB1	rs35470271-G	0.154	1E-16		1.1	[1.08-1.13]	Affymetrix, Illumina [16900397] (imputed)	N
897	chr3	40924961	40924962	rs35360328	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	3p22.1	NR	rs35360328-A	0.156	6E-13	(EA)	1.13	[1.09-1.17]	Affymetrix, Illumina [12931465] (imputed)	N
897	chr3	40924961	40924962	rs35360328	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	3p22.1	CTNNB1	rs35360328-A	0.16	3E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
897	chr3	40924961	40924962	rs35360328	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	3p22.1	CTNNB1	rs3536032-A	0.16	2E-8	(EA)	1.14	[1.09-1.19]	Affymetrix, Illumina [~ 2500000] (imputed)	N
897	chr3	40930456	40930457	rs868274332	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CX3CR1 on CD14- CD16+ monocyte	3,582 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p22.1		rs868274332-T	0.00699	2E-8		0.8297	[0.54-1.12] unit increase	Illumina [18196992] (imputed)	N
897	chr3	40987920	40987921	rs9813107	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p22.1	CTNNB1	rs9813107-T	0.877573	1E-21		0.026796	[0.021-0.032] unit increase	NR [13737936] (imputed)	N
897	chr3	40999998	40999999	rs9829061	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.1		rs9829061-?	NR	5E-19		0.0270907	[0.021-0.033] unit increase	Affymetrix [20259828] (imputed)	N
898	chr3	41042248	41042249	rs74895481	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p22.1		rs74895481-?	NR	3E-24				NR [~ 8900000] (imputed)	N
898	chr3	41042248	41042249	rs74895481	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.1		rs74895481-?	NR	1E-23		0.0427879	[0.034-0.051] unit decrease	Affymetrix [20259828] (imputed)	N
898	chr3	41099747	41099753	rs148725943	27311723	Pei YF	2016-06-16	Osteoporos Int	Association of 3q13.32 variants with hip trochanter and intertrochanter bone mineral density identified by a genome-wide association study.	Bone mineral density (hip)	6,912 European ancestry individuals	845 African American individuals, 446 Hispanic individuals, 971 European ancestry individuals	3p22.1	CTNNB1	rs148725943-?	NR	9E-9	(trochanter)	0.09	[NR] unit increase	Affymetrix [6879267] (imputed)	N
898	chr3	41105588	41105589	rs17201704	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p22.1	NR	rs17201704-T	0.858666	3E-28		0.0433007	[0.035-0.051] unit increase	Affymetrix [16580851] (imputed)	N
898	chr3	41105946	41105947	rs73075656	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	3p22.1	NR	rs73075656-T	NR	1E-10		0.024	[0.017-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
898	chr3	41105946	41105947	rs73075656	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3p22.1	NR	rs73075656-G	0.867041	2E-15		0.0147509	[0.011-0.018] unit increase	Affymetrix [16578495] (imputed)	N
898	chr3	41107172	41107173	rs6788984	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p22.1	NR	rs6788984-A	0.856468	2E-8		0.0200685	[0.013-0.027] unit increase	Affymetrix [16585745] (imputed)	N
898	chr3	41107172	41107173	rs6788984	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p22.1	CTNNB1	rs6788984-A	0.8557	4E-13		0.2558	[0.19-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
898	chr3	41112655	41112656	rs62259232	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3p22.1	NR	rs62259232-?	NR	9E-7		0.101033	[0.061-0.141] unit decrease	NR [13958389] (imputed)	N
898	chr3	41112655	41112656	rs62259232	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 30-45)	10,062 European and unknown ancestry individuals	NA	3p22.1	NR	rs62259232-A	0.4885	1E-9		0.0899	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
898	chr3	41113075	41113076	rs416486	29883787	Gregson CL	2018-06-05	Bone	Genome-wide association study of extreme high bone mass: Contribution of common genetic variation to extreme BMD phenotypes and potential novel BMD-associated genes.	Bone mineral density (total hip)	232 European ancestry high BMD individuals, 1,026 European ancestry moderate high BMD individuals, 852 European ancestry low BMD individuals	NA	3p22.1	ZNF621, CTNNB1	rs416486-T	0.44	4E-7		0.157	[0.096-0.218] unit decrease	Illumina [6379332] (imputed)	N
898	chr3	41118449	41118450	rs442115	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls	NA	3p22.1	RP11-372H2.1	rs442115-T	0.438769	1E-9		0.09787396	[0.066-0.129] unit increase	Affymetrix [7288503] (imputed)	N
898	chr3	41123734	41123735	rs10490823	19079262	Styrkarsdottir U	2008-12-14	Nat Genet	New sequence variants associated with bone mineral density.	Bone mineral density (hip)	6,865 European ancestry individuals	8,510 European ancestry individuals	3p22.1	NR	rs10490823-G	0.46	9E-6		0.06	[0.03-0.09] s.d. decrease	Illumina [305051]	N
898	chr3	41123983	41123984	rs370387	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	3p22.1	NR	rs370387-?	0.478410542011261	1E-7		0.056135725	[0.035-0.077] SD units decrease	Illumina [11603265] (imputed)	N
898	chr3	41123983	41123984	rs370387	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p22.1	CTNNB1	rs370387-G	0.442796	7E-148		0.0481439	[0.045-0.052] unit decrease	NR [13737936] (imputed)	N
898	chr3	41123983	41123984	rs370387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p22.1		rs370387-?	NR	7E-138				NR [~ 8900000] (imputed)	N
898	chr3	41123983	41123984	rs370387	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.1		rs370387-?	NR	2E-126		0.0476057	[0.044-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
898	chr3	41123983	41123984	rs370387	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p22.1	CTNNB1	rs370387-G	0.445529	4E-26	(women)	0.0450941	[0.036-0.054] unit decrease	NR [17166351] (imputed)	N
898	chr3	41123983	41123984	rs370387	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p22.1	CTNNB1	rs370387-G	0.444877	1E-40		0.0425363	[0.036-0.049] unit decrease	NR [17166351] (imputed)	N
898	chr3	41123983	41123984	rs370387	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p22.1	CTNNB1	rs370387-G	0.444131	2E-17	(men)	0.0405199	[0.03-0.051] unit decrease	NR [17166351] (imputed)	N
898	chr3	41127045	41127046	rs447911	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3p22.1	NR	rs447911-C	0.5348	6E-36		0.0708	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
898	chr3	41127214	41127215	rs401349	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs affecting bone structure and mineralization)	7,870 European ancestry cases, 207,798 European ancestry controls, 6,143 East Asian ancestry cases, 172,583 East Asian ancestry controls	NA	3p22.1		rs401349-C	NR	5E-8		0.0881	[0.057-0.12] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
898	chr3	41127605	41127606	rs444561	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	3p22.1	NR	rs444561-C	0.5642	1E-14		0.0831	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
898	chr3	41128563	41128564	rs430727	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	3p22.1	CTNNB1	rs430727-T	0.45	5E-12		1.03	[1.02-1.04]	Affymetrix, Illumina [2539801] (imputed)	N
898	chr3	41128563	41128564	rs430727	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3p22.1	CTNNB1	rs430727-T	0.48	4E-25		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
898	chr3	41129296	41129297	rs415997	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3p22.1	NR	rs415997-A	0.5324	3E-28	(European)	0.0683	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
898	chr3	41137671	41137672	rs87938	19801982	Rivadeneira F	2009-10-04	Nat Genet	Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.	Bone mineral density (hip)	19,195 European ancestry individuals	NA	3p22.1	CTNNB1	rs87938-A	0.45	8E-10		0.07	[0.05-0.09] s.d. decrease	Affymetrix, Illumina [2543686] (imputed)	N
898	chr3	41146354	41146355	rs2024219	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Lumbar spine bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	3p22.1	CTNNB1	rs2024219-T	0.488576	3E-12		0.055	[0.04-0.07] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
898	chr3	41146354	41146355	rs2024219	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	3p22.1	CTNNB1	rs2024219-T	0.488576	1E-16		0.0574	[0.044-0.071] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
898	chr3	41153555	41153556	rs389264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	3p22.1		rs389264-T	NR	9E-9		0.0703	[0.046-0.094] unit increase	Affymetrix, Illumina [25844994] (imputed)	N
899	chr3	41168954	41168955	rs7632244	32929176	Feng GJ	2020-09-14	J Hum Genet	Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.	Bone mineral density or trunk lean mass (pleiotropy)	8,508 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	215,234 European ancestry individuals	3p22.1	NR	rs7632244-G	0.97	3E-46				Affymetrix [12061510] (imputed)	N
899	chr3	41168954	41168955	rs7632244	32929176	Feng GJ	2020-09-14	J Hum Genet	Identification of pleiotropic loci underlying hip bone mineral density and trunk lean mass.	Bone mineral density	8,508 European ancestry individuals, 1,539 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	215,234 European ancestry individuals	3p22.1	NR	rs7632244-G	0.97	1E-73		0.044	[0.038-0.05] unit decrease	Affymetrix [12061510] (imputed)	N
899	chr3	41170869	41170870	rs78046470	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p22.1		rs78046470-?	NR	7E-40		0.0566996	[0.048-0.066] unit increase	Affymetrix [20259828] (imputed)	N
899	chr3	41171176	41171177	rs2371447	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age over 60)	22,504 European ancestry and African American individuals	NA	3p22.1	NR	rs2371447-T	0.4846	7E-13		0.0711	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
899	chr3	41171318	41171319	rs4419359	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p22.1	NR	rs4419359-A		7E-12		0.08	[0.06-0.1] unit increase	NR [NR]	N
899	chr3	41187999	41188000	rs7648547	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p22.1	NR	rs7648547-?	NR	3E-14				Affymetrix [NR]	N
899	chr3	41189722	41189723	rs9836481	32126890	Ter Hark SE	2020-03-04	J Psychopharmacol	A new genetic locus for antipsychotic-induced weight gain: A genome-wide study of first-episode psychosis patients using amisulpride (from the OPTiMiSE cohort).	Weight gain in amisulpride-treated first-episode psychosis	184 European ancestry individuals, 9 African ancestry individuals, 6 Hispanic/Latin American individuals, 3 South Asian ancestry individuals, 2 East Asian ancestry individuals, 2 individuals	NA	3p22.1	NR	rs9836481-A	NR	8E-6		0.9768	NR unit increase	Illumina [4533042] (imputed)	N
899	chr3	41198049	41198050	rs1722850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p22.1		rs1722850-?	NR	6E-9				NR [~ 8900000] (imputed)	N
899	chr3	41199131	41199132	rs773929421	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	High myopia	2,737 British ancestry cases, 47,635 British ancestry controls	NA	3p22.1	CTNNB1	rs773929421-?	0.551	4E-8		1.170423	[1.11-1.24]	Affymetrix [NR] (imputed)	N
899	chr3	41204417	41204417	rs398105798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p22.1		rs398105798-TA	NR	4E-8		0.0128	[0.0083-0.0173] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
899	chr3	41231967	41231968	rs9872276	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p22.1	Intergenic	rs9872276-T	0.4617	8E-12	(MTAG)	0.0123	[0.0088-0.0158] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
899	chr3	41231967	41231968	rs9872276	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p22.1	Intergenic	rs9872276-T	0.4624	4E-10	(MTAG)	0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
899	chr3	41233888	41233889	rs1722846	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p22.1	Intergenic	rs1722846-T	0.4625	5E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
899	chr3	41242366	41242367	rs1722845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.1		rs1722845-?	NR	3E-27				NR [~ 8900000] (imputed)	N
899	chr3	41255077	41255078	rs113957558	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs113957558-G	0.02091	2E-8	(MYL6)	0.07353	NR unit increase	Illumina [1671387] (imputed)	N
899	chr3	41258047	41258048	rs9813198	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p22.1	NR	rs9813198-?	NR	2E-6	(female)	0.11458	[0.067-0.162] unit increase	Affymetrix [7794483] (imputed)	N
899	chr3	41258047	41258048	rs9813198	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p22.1	NR	rs9813198-?	NR	2E-6		0.10605	[0.063-0.149] unit increase	Affymetrix [7794483] (imputed)	N
899	chr3	41258047	41258048	rs9813198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p22.1	Intergenic	rs9813198-A	0.512	1E-10	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
899	chr3	41281600	41281600	rs16339	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p22.1		rs16339-CTAAT	0.47036	9E-10		0.040918	[0.028-0.054] unit decrease	Affymetrix [15580782] (imputed)	N
899	chr3	41281600	41281600	rs16339	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p22.1		rs16339-CTAAT	0.47036	2E-12		0.047884	[0.035-0.061] unit decrease	Affymetrix [15580782] (imputed)	N
900	chr3	41289030	41289031	rs12492279	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p22.1	EIF1B, ZNF621, CTNNB1, ULK4	rs12492279-?		3E-27				Affymetrix, Illumina [NR] (imputed)	N
900	chr3	41291080	41291081	rs2293304	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p22.1	NR	rs2293304-A	0.456383	4E-16		0.0252852	[0.019-0.031] unit increase	NR [19129689] (imputed)	N
900	chr3	41308347	41308348	rs11707955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p22.1		rs11707955-C	NR	8E-13		0.0138	[0.01-0.018] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
900	chr3	41308347	41308348	rs11707955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p22.1		rs11707955-C	NR	1E-13		0.0114	[0.0085-0.0143] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
900	chr3	41311361	41311362	rs9816029	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p22.1	NA	rs9816029-C	0.3443	3E-9		0.0107	[0.0072-0.0142] unit increase	NR [~ 27400000] (imputed)	N
900	chr3	41343554	41343555	rs9867802	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p22.1	NR	rs9867802-C	0.3417	3E-9		0.0155308265	[0.01-0.021] unit increase	Affymetrix [10549349] (imputed)	N
900	chr3	41364240	41364241	rs6770252	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p22.1		rs6770252-?	NR	2E-10				NR [~ 8900000] (imputed)	N
900	chr3	41395346	41395347	rs116837984	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	ULK4	rs116837984-A	0.994	2E-7	(AA)	0.121	unit increase	Illumina [NR] (imputed)	N
900	chr3	41417839	41417840	rs60257661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p22.1		rs60257661-?	NR	3E-8				NR [~ 8900000] (imputed)	N
901	chr3	41437630	41437631	rs188003336	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	ULK4	rs188003336-G	0.998	1E-6	(AA)	0.296	unit increase	Illumina [NR] (imputed)	N
901	chr3	41446589	41446590	rs148560677	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	ULK4	rs148560677-C	0.998	1E-7	(AA)	0.289	unit increase	Illumina [NR] (imputed)	N
901	chr3	41494604	41494605	rs6809441	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence	1,331 German ancestry cases, 1,934 German ancestry controls	NA	3p22.1	ULK4	rs6809441-?	0.6626	6E-6		1.29		Illumina [194024]	N
902	chr3	41568790	41568791	rs1353394	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3p22.1	ULK4	rs1353394-G	NR	1E-8	(PWY-7282_4-amino-2-methyl-5-phosphomethylpyrimidine_biosynthesis_(yeast))	5.66631	NR Z-score decrease	Illumina [8100000] (imputed)	N
902	chr3	41587091	41587092	rs139606157	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p22.1	ULK4	rs139606157-A	0.992	3E-6	(AA)	0.1	unit increase	Illumina [NR] (imputed)	N
902	chr3	41606691	41606692	rs3897976	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	3p22.1		rs3897976-A	0.05095	3E-8		2.162	[1.646-2.84]	Affymetrix [7975321] (imputed)	N
902	chr3	41622041	41622042	rs57429321	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (fucosyllacto-N-hexaose)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p22.1		rs57429321-?	NR	2E-9				Illumina [1128286]	N
903	chr3	41706416	41706417	rs75028357	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	3p22.1	NR	rs75028357-A	0.9321	7E-7		1.0905	[0.66-1.52] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
903	chr3	41750988	41750989	rs6763508	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	3p22.1	ULK4	rs6763508-C	NR	8E-12				Illumina [10806625] (imputed)	N
903	chr3	41751332	41751333	rs6781529	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p22.1	NR	rs6781529-T	0.7513	1E-11		0.6446	[0.46-0.83] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
903	chr3	41753646	41753647	rs9848754	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	3p22.1	ULK4	rs9848754-T		6E-7		1.44	[1.25-1.67]	Illumina [10258281] (imputed)	N
903	chr3	41756964	41756965	rs61744388	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p22.1	ULK4	rs61744388-T		2E-8		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
903	chr3	41765954	41765955	rs7651190	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	ULK4	rs7651190-A	0.8875	7E-6	(Japanese)	0.3645	[0.21-0.52] unit increase	Illumina [6200000] (imputed)	N
903	chr3	41765954	41765955	rs7651190	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	ULK4	rs7651190-G	NR	2E-9		0.4072	[0.27-0.54] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
903	chr3	41765954	41765955	rs7651190	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	ULK4	rs7651190-G	NR	1E-10	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
903	chr3	41770613	41770614	rs117149828	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	3p22.1		rs117149828-?	NR	3E-6		1.559	[1.294-1.878]	Affymetrix [7975321] (imputed)	N
903	chr3	41786008	41786009	rs6599175	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3p22.1	NR	rs6599175-G	0.16	1E-9	(HD vs. controls)	1.48	[1.30-1.68]	Illumina [414804]	N
903	chr3	41788491	41788492	rs6599176	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p22.1	ULK4	rs6599176-T	0.267	6E-12		0.5282	[0.38-0.68] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
904	chr3	41812031	41812032	rs9832037	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p22.1		rs9832037-?	NR	4E-10				NR [~ 8900000] (imputed)	N
904	chr3	41818107	41818108	rs7644787	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	3p22.1	NR	rs7644787-A	0.8844	1E-9		0.035976	[0.024-0.048] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
904	chr3	41825952	41825953	rs116333066	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	3p22.1	NR	rs116333066-A	0.9537	2E-7		1.4096	[0.88-1.94] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
904	chr3	41828299	41828300	rs73071352	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	3p22.1	ULK4	rs73071352-G	NR	3E-8		0.25	[NR] unit increase	Illumina [12100000] (imputed)	N
904	chr3	41828299	41828300	rs73071352	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma	2,194 European ancestry cases, 222,555 European ancestry controls	586 European ancestry cases, 2,111 European ancestry controls	3p22.1	ULK4	rs73071352-G	0.14	5E-7		0.24	[NR] unit increase	Illumina [12100000] (imputed)	N
904	chr3	41837976	41837977	rs13324552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	152,447 East Asian ancestry individuals	NA	3p22.1		rs13324552-A	0.119696	7E-9		0.027501	[0.018-0.037] unit increase	Illumina [13478948] (imputed)	N
904	chr3	41837976	41837977	rs13324552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	3p22.1		rs13324552-A	0.11941	9E-10		0.0296274	[0.02-0.039] unit increase	Illumina [13478961] (imputed)	N
904	chr3	41839218	41839219	rs2371627	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs2371627-G	0.166476	3E-18				Affymetrix, Illumina [24653286] (imputed)	N
904	chr3	41839369	41839370	rs4621303	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	7,338 European, African American, South Asian and Hispanic ancestry cases, 225,258 European, African American, South Asian and Hispanic ancestry controls	NA	3p22.1	ULK4	rs4621303-T	0.83	6E-9		1.16	[1.1-1.22]	Illumina [6922875] (imputed)	N
904	chr3	41839369	41839370	rs4621303	33773637	Traylor M	2021-03-25	Lancet Neurol	Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.	Lacunar stroke	6,030 European ancestry cases, 248,929 European ancestry controls	NA	3p22.1	ULK4	rs4621303-T	0.83	2E-7		1.15	[1.09-1.21]	Illumina [6932927] (imputed)	N
904	chr3	41846450	41846451	rs182151107	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 8, orbital inclination due to vertical and horizontal position of exocanthion)	2,187 European ancestry individuals	NA	3p22.1	NR	rs182151107-A	0.006909	3E-6		0.858	[0.5-1.22] unit decrease	Illumina [34985077] (imputed)	N
904	chr3	41847735	41847736	rs373288921	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3p22.1		rs373288921-G	0.857999	2E-19		0.0991173	[0.078-0.121] decrease	Affymetrix [NR]	N
904	chr3	41847735	41847736	rs373288921	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p22.1	NR	rs373288921-T	0.140312	3E-12		0.019811	[0.014-0.025] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
904	chr3	41865473	41865474	rs6768542	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p22.1		rs6768542-?	NR	2E-10				NR [~ 8900000] (imputed)	N
904	chr3	41865842	41865843	rs7649989	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs7649989-C	0.163193	2E-17				Affymetrix, Illumina [24332387] (imputed)	N
904	chr3	41867598	41867599	rs200308031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p22.1		rs200308031-G	NR	6E-15		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
904	chr3	41867598	41867599	rs200308031	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p22.1		rs200308031-G	NR	4E-17		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
904	chr3	41867642	41867643	rs35475272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p22.1		rs35475272-C	NR	3E-9		0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
904	chr3	41868720	41868721	rs147428270	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	NR	rs147428270-?	NR	4E-7		0.5273	[0.32-0.73] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
904	chr3	41868720	41868721	rs147428270	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	NR	rs147428270-?	NR	2E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
904	chr3	41871355	41871356	rs111634789	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p22.1		rs111634789-C	NR	2E-25		0.0296	[0.024-0.035] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
904	chr3	41871396	41871397	rs28581706	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p22.1	ULK4	rs28581706-A	0.85	9E-38	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
904	chr3	41871519	41871520	rs28652776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3p22.1		rs28652776-C	0.118015	4E-12		0.0338731	[0.024-0.043] unit increase	Illumina [13479135] (imputed)	N
904	chr3	41877413	41877414	rs3774372	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	ULK4	rs3774372-T	0.8847	3E-6	(Japanese)	0.3764	[0.22-0.54] unit increase	Illumina [6200000] (imputed)	N
904	chr3	41877413	41877414	rs3774372	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3p22.1	ULK4	rs3774372-T	0.8261	3E-9		0.0254	unit decrease	Illumina [242296]	N
904	chr3	41877413	41877414	rs3774372	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p22.1	ULK4	rs3774372-T	0.78	8E-7	(Pulse Pressure)	0.298	[0.18-0.42] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
904	chr3	41877473	41877473	rs754907260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p22.1	ULK4	rs754907260-CAAA	0.145278	9E-11		0.02089221	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
904	chr3	41877473	41877473	rs754907260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p22.1	ULK4	rs754907260-CAAA	0.14528	2E-10		0.020610822	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
904	chr3	41882696	41882697	rs190379045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p22.1	ULK4	rs190379045-A	0.118236	7E-11		0.023605732	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
904	chr3	41882697	41882698	rs144406819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs144406819-T	0.12058	8E-19				Affymetrix, Illumina [24558453] (imputed)	N
904	chr3	41882697	41882698	rs144406819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p22.1	NR	rs144406819-T	0.118737	1E-13		0.023572	[0.017-0.03] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	NR	rs114714860-G		4E-18		0.41	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	NR	rs114714860-G		1E-16	(EA)	0.44	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p22.1	NR	rs114714860-G		4E-46		0.474	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	NR	rs114714860-G		5E-17		0.388	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	NR	rs114714860-G		1E-12	(EA)	0.367	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41882904	41882905	rs114714860	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p22.1	NR	rs114714860-G		2E-30		0.352	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41883691	41883692	rs60248638	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3p22.1		rs60248638-G	0.863879	8E-16		0.0859416	[0.065-0.107] decrease	Affymetrix [NR]	N
904	chr3	41887776	41887777	rs6797165	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.1	ULK4	rs6797165-G	0.7233	2E-63		0.5241	[0.46-0.59] mmHg increase	Affymetrix [NR] (imputed)	N
904	chr3	41889773	41889773	rs10662179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p22.1		rs10662179-TCA	NR	1E-60		0.0419	[0.037-0.047] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
904	chr3	41912650	41912651	rs9815354	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	ULK4	rs9815354-A	0.1199	3E-6	(Japanese)	0.3808	[0.22-0.54] unit decrease	Illumina [6200000] (imputed)	N
904	chr3	41912650	41912651	rs9815354	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Pulse pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p22.1	ULK4	rs9815354-A	0.168	6E-10	(EA, initial)	0.406	[0.28-0.54] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
904	chr3	41912650	41912651	rs9815354	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p22.1	ULK4	rs9815354-A	0.168	7E-11	(EA, initial)	0.398	[0.28-0.52] unit increase	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		2E-19	(EA)	0.484	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		1E-19		0.437	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		6E-49		0.501	unit increase	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		3E-13		0.346	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		3E-11	(EA)	0.345	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p22.1	ULK4	rs9815354-G		1E-26		0.333	unit decrease	Affymetrix [at least 2696785] (imputed)	N
904	chr3	41912650	41912651	rs9815354	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Diastolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	3p22.1	ULK4	rs9815354-A	0.17	3E-9		0.49	[0.33-0.65] mm Hg increase	Affymetrix, Illumina [2533153] (imputed)	N
904	chr3	41913615	41913616	rs73081364	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p22.1	ULK4	rs73081364-C	0.15	6E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
904	chr3	41914897	41914898	rs2683696	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.1	ULK4	rs2683696-C	0.5807	1E-38		0.3962	[0.34-0.46] mmHg decrease	Affymetrix [NR] (imputed)	N
904	chr3	41921809	41921810	rs79211428	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p22.1	ULK4	rs79211428-T	0.14	3E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
904	chr3	41925397	41925398	rs1052501	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	3p22.1	ULK4	rs1052501-C	0.19	4E-9		1.2	[NR]	Illumina [33000000] (imputed)	N
904	chr3	41925397	41925398	rs1052501	22120009	Broderick P	2011-11-27	Nat Genet	Common variation at 3p22.1 and 7p15.3 influences multiple myeloma risk.	Multiple myeloma	1,675 European ancestry cases, 5,903 European ancestry controls	169 European ancestry cases, 927 European ancestry controls	3p22.1	ULK4	rs1052501-G	0.16	2E-8		1.32	[1.20-1.45]	Illumina [422839]	N
904	chr3	41932329	41932330	rs62258655	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p22.1	ULK4	rs62258655-A	0.76	2E-32	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	41954586	41954587	rs9822598	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p22.1		rs9822598-A	NR	8E-19		0.0216	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
905	chr3	41964127	41964128	rs1716983	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3p22.1	ULK4	rs1716983-A	0.8	6E-26	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	41968607	41968608	rs144971964	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals	6,500 African American individuals	3p22.1	NR	rs144971964-A	0.9578	3E-7		1.4162	[0.88-1.96] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
905	chr3	41970742	41970743	rs7622665	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p22.1	ULK4	rs7622665-T	0.2	4E-18	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	41972208	41972209	rs1716990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p22.1	NR	rs1716990-T	0.836676	4E-15		0.019566	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
905	chr3	41977463	41977464	rs73071203	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p22.1	NR	rs73071203-C	NR	7E-11		0.0232	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
905	chr3	41981489	41981490	rs1717020	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p22.1	NR	rs1717020-A	0.7253	2E-10		0.5839	[0.41-0.76] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
905	chr3	41987919	41987920	rs1717027	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Diastolic blood pressure	11,380 African American individuals, 21,549 Hispanic/Latino individuals, 1,086 Asian ancestry individuals, 636 Native American ancestry individuals, 782 individuals	NA	3p22.1	NR	rs1717027-?	NR	1E-7		0.5609989	[0.35-0.77] unit decrease	Illumina [32101933] (imputed)	N
905	chr3	41987919	41987920	rs1717027	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	ULK4	rs1717027-T	0.1152	2E-6	(Japanese)	0.3884	[0.23-0.55] unit decrease	Illumina [6200000] (imputed)	N
905	chr3	41987919	41987920	rs1717027	23972371	Franceschini N	2013-08-20	Am J Hum Genet	Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations.	Blood pressure	28,190 African American individuals, 1,188 Nigerian ancestry individuals	69,395 European ancestry individuals, 5,266 African American individuals, 6,497 African ancestry individuals, 19,601 East Asian ancestry individuals	3p22.1	ULK4	rs1717027-T	0.64	5E-13	(DBP)	0.49	[0.29-0.69] unit increase	Affymetrix, Illumina [~ 2420000] (imputed)	N
905	chr3	41990121	41990122	rs7372217	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	ULK4	rs7372217-A	0.8849	2E-6	(Japanese)	0.3883	[0.23-0.55] unit increase	Illumina [6200000] (imputed)	N
905	chr3	41990121	41990122	rs7372217	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	ULK4	rs7372217-G	NR	5E-12		0.4721	[0.34-0.61] unit decrease	Affymetrix, Illumina [at least 30072738] (imputed)	N
905	chr3	41990121	41990122	rs7372217	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p22.1	ULK4	rs7372217-G	NR	1E-11	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
905	chr3	41992407	41992408	rs6599192	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p22.1	NR	rs6599192-A	0.7362	1E-11		0.513	[0.36-0.66] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
905	chr3	41992407	41992408	rs6599192	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	3p22.1	NR	rs6599192-G		9E-18		1.26	[1.20-1.33]	Illumina [at least 7182761] (imputed)	N
905	chr3	41996135	41996136	rs2272007	27736895	Franceschini N	2016-10-13	PLoS One	Variant Discovery and Fine Mapping of Genetic Loci Associated with Blood Pressure Traits in Hispanics and African Americans.	Diastolic blood pressure	19,706 Hispanic individuals, 18,744 African American individuals	NA	3p22.1	ULK4	rs2272007-?	NR	2E-8				Illumina [up to 196725]	N
905	chr3	41996135	41996136	rs2272007	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p22.1	ULK4	rs2272007-T	0.18	4E-12		0.328	[0.24-0.42] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
905	chr3	41996135	41996136	rs2272007	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3p22.1	NR	rs2272007-A	0.16	2E-9	(HD vs. controls)	1.47	[1.30-1.67]	Illumina [414804]	N
905	chr3	41997748	41997749	rs75133830	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	3p22.1		rs75133830-?	NR	3E-6		1.565	[1.298-1.886]	Affymetrix [7975321] (imputed)	N
905	chr3	42012692	42012693	rs73073235	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p22.1		rs73073235-A	0.145417	1E-15		0.025156777	[0.019-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
905	chr3	42013849	42013850	rs9856633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p22.1		rs9856633-?	NR	4E-18				NR [~ 8900000] (imputed)	N
905	chr3	42028721	42028722	rs794899	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p22.1	ULK4, LOC100287063	rs794899-T	0.18	2E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	42034729	42034730	rs794905	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p22.1	TRAK1, LOC100287063	rs794905-T	0.85	2E-30	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	42034729	42034730	rs794905	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption interaction (2df test)	91,099 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	238,053 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,447 Hispanic ancestry drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic ancestry non-drinkers	3p22.1	TRAK1, LOC100287063	rs794905-T	0.82	5E-33	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	42034729	42034730	rs794905	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Pulse pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,079 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,756 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3p22.1	TRAK1, LOC100287063	rs794905-T	0.84	2E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
905	chr3	42043940	42043941	rs1589423	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p22.1	NR	rs1589423-T	0.1119	2E-8	(East Asian)	0.3648	[0.24-0.49] unit decrease	Illumina [6200000] (imputed)	N
905	chr3	42054909	42054910	rs112912733	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p22.1	ULK4	rs112912733-A	0.0955	1E-12		0.4206	[0.3-0.54] mmHg decrease	Affymetrix [NR] (imputed)	N
905	chr3	42069452	42069453	rs115012942	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p22.1	TRAK1	rs115012942-T	0.9544	8E-6		0.0765	[0.043-0.11] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
906	chr3	42093421	42093422	rs1498095	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p22.1	TRAK1	rs1498095-T	0.91	8E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.1	TRAK1	rs11921457-T	0.816347	4E-8	(-108 ms)	0.0412786	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.1	TRAK1	rs11921457-T	0.816347	3E-8	(-112 ms)	0.0412549	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.1	TRAK1	rs11921457-T	0.816347	3E-8	(-106 ms)	0.0411813	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p22.1	TRAK1	rs11921457-T	0.816347	2E-8	(-100 ms)	0.0414845	[0.027-0.056] unit decrease	Affymetrix [10000000] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p22.1	TRAK1	rs11921457-T	0.81	8E-16		0.69	[0.51-0.87] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
906	chr3	42103044	42103045	rs11921457	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3p22.1	TRAK1	rs11921457-T	0.8079	1E-16		0.7337	[0.56-0.91] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
906	chr3	42173100	42173101	rs576827745	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p22.1	NR	rs576827745-T	0.1565	9E-7		0.4916	[0.3-0.69] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
907	chr3	42257576	42257577	rs76416179	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-884 sp000433875 abundance in stool	5,959 Finnish ancestry individuals	NA	3p22.1		rs76416179-T	0.0187026	4E-9		0.256102	[0.17-0.34] unit increase	Illumina [7980478] (imputed)	N
907	chr3	42257576	42257577	rs76416179	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-884 abundance in stool	5,959 Finnish ancestry individuals	NA	3p22.1		rs76416179-T	0.0187026	2E-9		0.286299	[0.19-0.38] unit increase	Illumina [7980478] (imputed)	N
907	chr3	42257576	42257577	rs76416179	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-822 abundance in stool	5,959 Finnish ancestry individuals	NA	3p22.1		rs76416179-T	0.0187026	1E-8		0.248237	[0.16-0.33] unit increase	Illumina [7980478] (imputed)	N
907	chr3	42270680	42270681	rs7626019	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neurofibrillary tangles	up to 4,707 individuals	NA	3p22.1	intergenic	rs7626019-T	0.2287	8E-6	(Ordinal II)	0.2353	[0.13-0.34] unit increase	Affymetrix, Illumina [NR] (imputed)	N
907	chr3	42299398	42299399	rs8192473	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p22.1	CCK	rs8192473-T	0.097	4E-9	(Japanese)	0.035	[0.023-0.047] unit decrease	Illumina [6108953] (imputed)	N
907	chr3	42299869	42299870	rs8192472	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	3p22.1	CCK	rs8192472-A	0.37	1E-6		4.85	[NR] z score decrease	Affymetrix, Illumina [up to 583824] (imputed)	N
907	chr3	42303073	42303074	rs4377469	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	3p22.1	NR	rs4377469-?	NR	6E-6		0.03098841	[0.018-0.044] unit increase	Illumina [32062178] (imputed)	N
907	chr3	42303073	42303074	rs4377469	22344221	Okada Y	2012-02-19	Nat Genet	Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.	Body mass index (SNP x SNP interaction)	26,620 Japanese ancestry individuals	35,625 East Asian ancestry individuals	3p22.1	CCK	rs4377469-T	0.69	2E-7		0.039	[0.025-0.053] unit increase	Illumina [2178018] (imputed)	N
907	chr3	42305130	42305131	rs754635	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p22.1	CCK	rs754635-C	0.113398	6E-13		0.0159064	[0.012-0.02] unit decrease	Affymetrix [12370749]	N
907	chr3	42305130	42305131	rs754635	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	3p22.1	NR	rs754635-?	NR	2E-7		0.03738277	[0.023-0.051] unit increase	Illumina [32062178] (imputed)	N
907	chr3	42305130	42305131	rs754635	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p22.1	CCK	rs754635-G	0.8709	1E-8		0.0356	[0.023-0.048] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
907	chr3	42308734	42308735	rs10460960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3p22.1		rs10460960-A	0.704295	1E-8		0.0198403	[0.013-0.027] unit increase	Illumina [13479178] (imputed)	N
907	chr3	42308734	42308735	rs10460960	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p22.1	NR	rs10460960-G	NR	1E-10		0.025	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
907	chr3	42308734	42308735	rs10460960	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p22.1	CCK, LYZL4	rs10460960-A	0.89	3E-11		0.02	[0.014-0.026] unit increase	Illumina [6108953] (imputed)	N
907	chr3	42309704	42309705	rs74556234	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p22.1	NR	rs74556234-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
907	chr3	42314654	42314655	rs935111	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p22.1	CCK	rs935111-?	NR	6E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
907	chr3	42314654	42314655	rs935111	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p22.1	CCK	rs935111-?	NR	3E-7				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
907	chr3	42314654	42314655	rs935111	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p22.1	CCK	rs935111-G	0.8854	4E-8	(men)	0.0514	[0.033-0.07] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
907	chr3	42324696	42324697	rs75128851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p22.1		rs75128851-G	NR	5E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
907	chr3	42324696	42324697	rs75128851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p22.1		rs75128851-G	NR	5E-16		0.0205	[0.016-0.025] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
907	chr3	42329112	42329113	rs111768603	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p22.1	CCK	rs111768603-G	0.890178	4E-13		0.0159053	[0.012-0.02] unit increase	Affymetrix [12370749]	N
907	chr3	42329112	42329113	rs111768603	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.1	NR	rs111768603-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
907	chr3	42329112	42329113	rs111768603	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p22.1	NR	rs111768603-T	0.1111	2E-9		0.023621576	[0.016-0.031] unit decrease	Affymetrix [10549349] (imputed)	N
907	chr3	42329112	42329113	rs111768603	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p22.1		rs111768603-?	NR	2E-13				NR [~ 8900000] (imputed)	N
907	chr3	42329617	42329618	rs4682849	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p22.1	NR	rs4682849-A	0.102	5E-6	(IFNalpha_ABC_of_CD8p_T)			Illumina [5084123] (imputed)	N
907	chr3	42332623	42332624	rs9839267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p22.1	NA	rs9839267-T	0.8919	2E-17		0.0227	[0.017-0.028] unit increase	NR [~ 27400000] (imputed)	N
907	chr3	42332623	42332624	rs9839267	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p22.1	NA	rs9839267-T	0.8919	2E-17		0.0227	[0.017-0.028] unit increase	NR [~ 27400000] (imputed)	N
908	chr3	42400800	42400801	rs33449	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p22.1	EIF4BP4, SALL4P6, LYZL4, CCK	rs33449-C	NR	2E-6	(resting duration, weekdays)	0.6513	[0.38-0.92] unit decrease	Affymetrix [7141204] (imputed)	N
908	chr3	42417981	42417982	rs33485	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p22.1	NA	rs33485-T	0.7415	1E-14		0.015	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
908	chr3	42418445	42418446	rs28350	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.1	NR	rs28350-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
908	chr3	42418445	42418446	rs28350	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p22.1	NA	rs28350-A	0.1717	1E-14		0.0172	[0.013-0.022] unit increase	NR [~ 27400000] (imputed)	N
908	chr3	42435172	42435173	rs247420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.1	NR	rs247420-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
908	chr3	42448470	42448471	rs2286720	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (reasoning)	738 European ancestry, African American, and other ancestry cases	NA	3p22.1	LYZL4	rs2286720-?	0.07	1E-6	(olanzapine)			Affymetrix [492900]	N
908	chr3	42449250	42449251	rs149073437	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3p22.1	LYZL4	rs149073437-T	NR	1E-6		0.456188	[0.27-0.64] unit increase	Illumina [13519193] (imputed)	N
909	chr3	42474042	42474043	rs704967	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	3p22.1	NR	rs704967-T	NR	4E-6				NR [NR] (imputed)	N
909	chr3	42474042	42474043	rs704967	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	3p22.1	LYZL4, VIPR1	rs704967-T	NR	4E-6			[NR]	NR [NR] (imputed)	N
909	chr3	42490884	42490885	rs9876105	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.1	NR	rs9876105-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
909	chr3	42515121	42515122	rs11709009	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3p22.1	LYZL4, VIPR1	rs11709009-A	0.194	6E-7		1.0724	[1.04-1.1]	NR [9372253] (imputed)	N
909	chr3	42517546	42517547	rs78710621	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	3p22.1	NR	rs78710621-A	NR	7E-7	(African)	0.9478	[0.57-1.32] unit increase	Affymetrix, Illumina [up to 15123508] (imputed)	N
909	chr3	42529081	42529082	rs11718502	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Magnesium levels	2,317 European ancestry children, 1,283 African American ancestry children	NA	3p22.1	NR	rs11718502-T	NR	3E-6	(AA)	0.05767	(0.03365-0.08169) mg/dl increase	Illumina [up to 509150]	N
909	chr3	42564623	42564624	rs147922137	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3p22.1	VIPR1, VIPR1-AS1	rs147922137-T	0.9953	8E-6		1.7489	[0.98-2.52] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
909	chr3	42571545	42571546	rs417387	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Cerebrospinal fluid clusterin levels	300 Alzheimer's disease cases, 373 controls	NA	3p22.1	VIPR1	rs417387-?		3E-6		0.353	[NR] unit decrease	Illumina [5970354] (imputed)	N
909	chr3	42587864	42587865	rs78517245	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p22.1	SEC22C	rs78517245-T	0.985349	4E-9		0.0343879	[0.023-0.046] unit decrease	Affymetrix [12370749]	N
909	chr3	42591853	42591854	rs114202043	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs114202043-C	NR	2E-18		0.3392	[0.26-0.41] SD units decrease	NR [10700000] (imputed)	N
910	chr3	42630978	42630979	rs34801786	30319691	Liu C	2018-09-24	Front Genet	Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development.	Cognitive impairment test score	235 early mild cognitive impairment cases, 249 late mild cognitive impairment cases, 47 Alzheimer's disease cases, 281 controls.	NA	3p22.1	Intergenic	rs34801786-?		7E-6		2.644884	[NR] unit decrease	Illumina [575353]	N
910	chr3	42711974	42711975	rs78114600	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p22.1	NR	rs78114600-C		5E-9		0.215	[0.14-0.29] SD units decrease	NR [10700000] (imputed)	N
911	chr3	42733467	42733468	rs123509	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p22.1	KBTBD5	rs123509-T	0.240651	3E-8		0.01004	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
911	chr3	42733467	42733468	rs123509	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p22.1	KBTBD5	rs123509-T	0.240651	1E-6	(females)	0.01348	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
911	chr3	42733467	42733468	rs123509	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p22.1	KBTBD5	rs123509-T	0.240651	3E-6	(males)	0.001909	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
911	chr3	42733467	42733468	rs123509	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	3p22.1	KBTBD5	rs123509-T		5E-6	(EA)	1.3	[1.02-1.65]	Affymetrix, Illumina [NR] (imputed)	N
911	chr3	42740593	42740594	rs145311353	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Colorectal cancer	3,351 White British ancestry cases, 271,479 White British ancestry controls	NA	3p22.1		rs145311353-?	NR	2E-6		3.59801	[3.07-4.12]	NR [675173]	N
911	chr3	42769656	42769657	rs56978598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p22.1		rs56978598-?	NR	3E-9				NR [~ 8900000] (imputed)	N
911	chr3	42789081	42789082	rs115333627	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs115333627-G	NR	8E-25		0.4251	[0.34-0.51] SD units decrease	NR [10700000] (imputed)	N
911	chr3	42808070	42808071	rs339665	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3p22.1	CCDC13	rs339665-T	0.95	6E-6	(Age 20-81 years)	0.4063	[0.23-0.58] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
911	chr3	42812638	42812639	rs10865923	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	3p22.1		rs10865923-C	0.3	3E-11		0.0564	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
912	chr3	42872589	42872590	rs7433284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p22.1	RP11-141M3.5, KRBOX1, RP11-70C1.3, ACKR2	rs7433284-A	0.382991	1E-15		0.018616052	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42872589	42872590	rs7433284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p22.1	RP11-141M3.5, KRBOX1, RP11-70C1.3, ACKR2	rs7433284-A	0.382912	6E-15		0.018145844	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42875198	42875198	rs34052773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p22.1	RP11-141M3.5, KRBOX1, RP11-70C1.3, ACKR2	rs34052773-TA	0.383475	2E-23		0.022838213	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42877710	42877711	rs4682863	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5, RP11-70C1.3	rs4682863-G	0.4098	2E-14		0.02792974	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42881064	42881065	rs1007638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p22.1		rs1007638-A	NR	2E-25		0.0226	[0.018-0.027] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
912	chr3	42883001	42883002	rs11919717	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p22.1		rs11919717-A	NR	1E-34		0.0245	[0.021-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
912	chr3	42892960	42892961	rs4683346	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5, RP11-70C1.3	rs4683346-C	0.3245	5E-19		0.03385358	[0.026-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42894426	42894427	rs10865924	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	3p22.1	CCDC13, HIGD1A, CCBP2, CYP8B1, ZNF662, KRBOX1, FAM198A	rs10865924-G	0.3018	3E-6		1.84	[1.59-2.09]	Illumina [8809853] (imputed)	N
912	chr3	42896450	42896451	rs9872440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5	rs9872440-C	0.3856	6E-18		0.03183059	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42896450	42896451	rs9872440	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5	rs9872440-C	0.3857	4E-12		0.02552774	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42896514	42896515	rs9872570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5	rs9872570-A	0.3848	2E-11		0.02478297	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42896514	42896515	rs9872570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5	rs9872570-A	0.3847	4E-11		0.02424913	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42896514	42896515	rs9872570	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	3p22.1	KRBOX1, ACKR2, RP11-141M3.5	rs9872570-A	0.3849	1E-10		0.02356539	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42900999	42901000	rs2195224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p22.1	CYP8B1, KRBOX1, ACKR2, RP11-141M3.5	rs2195224-A	0.3865	4E-65		0.06222757	[0.055-0.069] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42905464	42905465	rs4682867	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDSN	5,366 Icelandic ancestry individuals	NA	3p22.1		rs4682867-T	0.3636	6E-19		0.17633	[0.14-0.22] unit decrease	Illumina [7506463] (imputed)	N
912	chr3	42905464	42905465	rs4682867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p22.1	RP11-141M3.5, CYP8B1, ACKR2, KRBOX1	rs4682867-T	0.383209	2E-24		0.0236692	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42905514	42905515	rs4682868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p22.1		rs4682868-?	NR	3E-26				NR [~ 8900000] (imputed)	N
912	chr3	42905514	42905515	rs4682868	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p22.1	CYP8B1, KRBOX1, ACKR2, RP11-141M3.5	rs4682868-T	0.3869	8E-38		0.04686022	[0.04-0.054] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDSN	5,366 Icelandic ancestry individuals	NA	3p22.1		rs2228467-C	0.05843	3E-18		0.350328	[0.27-0.43] unit increase	Illumina [7506463] (imputed)	N
912	chr3	42906115	42906116	rs2228467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL17	5,367 Icelandic ancestry individuals	NA	3p22.1		rs2228467-C	0.05843	5E-46		0.566851	[0.49-0.64] unit increase	Illumina [7506463] (imputed)	N
912	chr3	42906115	42906116	rs2228467	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL11	5,364 Icelandic ancestry individuals	NA	3p22.1		rs2228467-C	0.05843	1E-35		0.494248	[0.42-0.57] unit increase	Illumina [7506463] (imputed)	N
912	chr3	42906115	42906116	rs2228467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p22.1		rs2228467-C	NR	2E-211		0.1497	[0.14-0.16] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
912	chr3	42906115	42906116	rs2228467	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p22.1		rs2228467-C	NR	2E-31		0.0428	[0.036-0.05] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
912	chr3	42906115	42906116	rs2228467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p22.1		rs2228467-T	0.939	2E-106				Affymetrix [10369434] (imputed)	N
912	chr3	42906115	42906116	rs2228467	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p22.1		rs2228467-T	0.939	1E-102				Affymetrix [10369434] (imputed)	N
912	chr3	42906115	42906116	rs2228467	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Thymus and reactivation regulated chemokine levels	8,318 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-T	0.07	2E-82		0.41	[0.37-0.45] unit decrease	Illumina [~ 9000000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p22.1	NR	rs2228467-T	NR	9E-30		0.1055	[0.087-0.124] unit decrease	Illumina [~ 9000000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	3p22.1		rs2228467-T	0.93	6E-37		0.1837	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.06124	6E-11		0.030718034	[0.022-0.04] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.061292	4E-192		0.13905135	[0.13-0.15] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.06129	2E-218		0.14806888	[0.14-0.16] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.061257	6E-10		0.029053323	[0.02-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.061292	2E-26		0.048838403	[0.04-0.058] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p22.1	ACKR2	rs2228467-C	0.061291	9E-32		0.05497323	[0.046-0.064] unit increase	Affymetrix [93095623] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs2228467-C	0.059908	7E-361				Affymetrix, Illumina [23467995] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p22.1	NR	rs2228467-C	0.061974	4E-361		0.157057	[0.15-0.16] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs2228467-C	0.059513	3E-49				Affymetrix, Illumina [19872809] (imputed)	N
912	chr3	42906115	42906116	rs2228467	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p22.1	NR	rs2228467-C	0.061584	9E-52		0.062272	[0.054-0.07] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
912	chr3	42906115	42906116	rs2228467	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p22.1		rs2228467-?	NR	2E-40				NR [~ 8900000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p22.1	ACKR2	rs2228467-C	0.04	4E-9	(CCL19)	0.42	[0.28-0.56] unit increase	Affymetrix [622716]	N
912	chr3	42906115	42906116	rs2228467	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p22.1	ACKR2	rs2228467-C	0.04	3E-8	(CXCL9)	0.29	[0.19-0.39] unit increase	Affymetrix [622716]	N
912	chr3	42906115	42906116	rs2228467	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3p22.1	ACKR2	rs2228467-C	0.04	2E-10	(CCL17)	0.48	[0.34-0.62] unit increase	Affymetrix [622716]	N
912	chr3	42906115	42906116	rs2228467	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.067	7E-34	(C-C motif chemokine 17, CCL17.3519.3.2)	0.59	[0.49-0.69] unit increase	Affymetrix [10572788] (imputed)	N
912	chr3	42906115	42906116	rs2228467	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.067	5E-30	(Eotaxin, CCL11.5301.7.3)	0.56	[0.46-0.66] unit increase	Affymetrix [10572788] (imputed)	N
912	chr3	42906115	42906116	rs2228467	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p22.1	ACKR2, KRBOX1, CYP8B1, RP11-141M3.6, RP11-136C24.3	rs2228467-C	0.0718593	4E-11	(EA, C-C motif chemokine 17)	0.5514	[0.39-0.71] unit increase	Affymetrix [509946]	N
912	chr3	42906115	42906116	rs2228467	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C		9E-20		0.2637	[0.21-0.32] SD units increase	NR [10700000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	NR	2E-46		0.4163	[0.36-0.47] SD units increase	NR [10700000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	2E-19		0.0669722	[0.052-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	3E-11		0.04928954	[0.035-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	6E-13		0.05384845	[0.039-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0615	1E-97		0.1552617	[0.14-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0615	7E-121		0.1733861	[0.16-0.19] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	1E-65		0.1270537	[0.11-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	9E-14		0.05520398	[0.041-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	9E-14		0.05538429	[0.041-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p22.1	ACKR2	rs2228467-C	0.0616	5E-21		0.06971486	[0.055-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42906115	42906116	rs2228467	25340798	Kauwe JS	2014-10-23	PLoS Genet	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	Cerebrospinal fluid levels of Alzheimer's disease-related proteins	574 individuals	NA	3p22.1	CCBP2	rs2228467-G	NR	4E-18	(Monocyte chemotactic protein 1)			Illumina [5815690] (imputed)	N
912	chr3	42906115	42906116	rs2228467	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	3p22.1	CCBP2	rs2228467-G	0.06	2E-7		0.3	unit increase	Illumina [NR]	N
912	chr3	42907111	42907112	rs2228468	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p22.1	ACKR2	rs2228468-C	0.385332	4E-45		0.032684784	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42907111	42907112	rs2228468	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	3p22.1	ACKR2	rs2228468-?	NR	2E-14		0.04402	[0.033-0.055] unit decrease novel	Illumina [6108953] (imputed)	N
912	chr3	42907111	42907112	rs2228468	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (monocyte)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3p22.1	NR	rs2228468-C	0.47	1E-6		0.012	[0.0081-0.0159] unit decrease	Illumina [27887661] (imputed)	N
912	chr3	42907111	42907112	rs2228468	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	3p22.1	CCBP2	rs2228468-C	0.36	5E-7		0.14	unit decrease	Illumina [NR]	N
912	chr3	42907411	42907411	rs141413113	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3p22.1	ACKR2	rs141413113-TCTCC	0.3816	2E-9		0.02198668	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
912	chr3	42908774	42908775	rs1366046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3p22.1		rs1366046-A	0.614	1E-13				Affymetrix [10369434] (imputed)	N
912	chr3	42908774	42908775	rs1366046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p22.1		rs1366046-A	0.614	3E-65				Affymetrix [10369434] (imputed)	N
912	chr3	42908774	42908775	rs1366046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p22.1		rs1366046-A	0.614	8E-48				Affymetrix [10369434] (imputed)	N
912	chr3	42908774	42908775	rs1366046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p22.1	ACKR2	rs1366046-C	0.385304	1E-87		0.045984983	[0.041-0.051] unit decrease	Affymetrix [93095623] (imputed)	N
912	chr3	42909049	42909050	rs1366045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	3p22.1		rs1366045-C	0.597419	2E-20		0.0413471	[0.033-0.05] unit decrease	Illumina [13471440] (imputed)	N
912	chr3	42909049	42909050	rs1366045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs1366045-C	0.427321	8E-43				Affymetrix, Illumina [24649327] (imputed)	N
912	chr3	42909049	42909050	rs1366045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p22.1	NR	rs1366045-C	0.384323	5E-39		0.024654	[0.021-0.028] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
912	chr3	42909049	42909050	rs1366045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p22.1	NR	rs1366045-C	0.410286	1E-29				Affymetrix, Illumina [23114412] (imputed)	N
912	chr3	42909049	42909050	rs1366045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p22.1	NR	rs1366045-C	0.38497	1E-28		0.021881	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
912	chr3	42909049	42909050	rs1366045	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	3p22.1	NR	rs1366045-T	0.40244	1E-18		0.042555	[0.033-0.052] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
912	chr3	42909159	42909160	rs3919627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL11	5,364 Icelandic ancestry individuals	NA	3p22.1		rs3919627-A	0.366	2E-24		0.199872	[0.16-0.24] unit decrease	Illumina [7506463] (imputed)	N
912	chr3	42909159	42909160	rs3919627	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p22.1	NR	rs3919627-A	0.388	1E-24	(Eotaxin, CCL11.5301.7.3)	0.26	[0.2-0.32] unit decrease	Affymetrix [10572788] (imputed)	N
912	chr3	42909159	42909160	rs3919627	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	CCBP2, CCDC13, HIGD1A, FAM198A	rs3919627-G	0.353	2E-7	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
912	chr3	42914876	42914877	rs2888272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	3p22.1		rs2888272-G	0.592902	5E-8		0.0248856	[0.016-0.034] unit decrease	Illumina [13469940] (imputed)	N
912	chr3	42917046	42917047	rs9865715	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs9865715-A	0.0122	3E-8	(MCCC2)	0.1261	NR unit increase	Illumina [1671387] (imputed)	N
912	chr3	42918237	42918238	rs760194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	3p22.1		rs760194-C	0.579473	1E-11		0.0231702	[0.016-0.03] unit decrease	Illumina [13479091] (imputed)	N
912	chr3	42943215	42943216	rs34307719	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	3p22.1	intergenic	rs34307719-T	0.987	3E-9	(YKL-40)	45440.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
913	chr3	43020500	43020501	rs116826172	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p22.1	NR	rs116826172-T	NR	5E-14		0.1031	[0.076-0.13] unit decrease	Illumina [~ 9000000] (imputed)	N
913	chr3	43020500	43020501	rs116826172	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs116826172-C	NR	4E-27		0.4338	[0.35-0.51] SD units increase	NR [10700000] (imputed)	N
913	chr3	43027003	43027004	rs36132109	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p22.1	NR	rs36132109-G		3E-10		0.1027	[0.071-0.135] SD units decrease	NR [10700000] (imputed)	N
913	chr3	43066557	43066558	rs35110063	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p22.1	NR	rs35110063-A	0.4266	9E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
913	chr3	43066767	43066768	rs11711770	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p22.1	NR	rs11711770-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
913	chr3	43080949	43080950	rs62247124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p22.1		rs62247124-?	NR	2E-23				NR [~ 8900000] (imputed)	N
913	chr3	43091016	43091017	rs1523123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p22.1		rs1523123-A	NR	4E-16		0.0148	[0.011-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
913	chr3	43097764	43097765	rs3732858	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	3p22.1	NR	rs3732858-A	0.176143877281142	7E-7				NR [9276018] (imputed)	N
913	chr3	43119210	43119211	rs664197	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs664197-C	0.0122	3E-8	(MCCC2)	0.1261	NR unit increase	Illumina [1671387] (imputed)	N
914	chr3	43122965	43122966	rs2936818	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POMGNT2	5,366 Icelandic ancestry individuals	NA	3p22.1		rs2936818-A	0.4668	3E-50		0.274718	[0.24-0.31] unit decrease	Illumina [7506463] (imputed)	N
914	chr3	43131771	43131772	rs190198015	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs190198015-C	NR	6E-8		0.4281	[0.27-0.58] SD units decrease	NR [10700000] (imputed)	N
914	chr3	43136695	43136696	rs62247992	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	3p22.1	NR	rs62247992-A	0.1604	3E-6		0.1904	[0.11-0.27] unit increase	Illumina [10677593] (imputed)	N
914	chr3	43147651	43147652	rs729654	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p22.1	POMGNT2	rs729654-C	0.53375	4E-30	(POMGNT2, 6359_50_3)	0.2744433	[0.23-0.32] unit increase	Illumina [> 1000000] (imputed)	N
914	chr3	43147651	43147652	rs729654	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p22.1	POMGNT2	rs729654-T	0.473	9E-27	(Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2, POMGNT2.6359.50.3)	0.26	[0.22-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
914	chr3	43155438	43155439	rs112046403	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p22.1	NR	rs112046403-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
914	chr3	43155438	43155439	rs112046403	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p22.1		rs112046403-?	NR	1E-9				NR [~ 8900000] (imputed)	N
914	chr3	43219128	43219129	rs542717775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p22.1	AC104434.1	rs542717775-C	NR	4E-8		0.0563495	[0.036-0.076] unit decrease	Affymetrix [319769] (imputed)	N
914	chr3	43219128	43219129	rs542717775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p22.1	AC104434.1	rs542717775-C	NR	3E-8		0.0570356	[0.037-0.077] unit decrease	Affymetrix [319769] (imputed)	N
914	chr3	43230722	43230723	rs17075286	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	3p22.1	C3orf39	rs17075286-?	NR	8E-7				Affymetrix [302482]	N
914	chr3	43245850	43245851	rs12635407	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-5 levels	3,364 Finnish ancestry individuals	NA	3p22.1	NR	rs12635407-G		7E-6		0.3657	[0.21-0.52] SD units increase	NR [10700000] (imputed)	N
915	chr3	43256743	43256744	rs6791526	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	3p22.1	POMGNT2	rs6791526-T	0.073	2E-10		1.46	NR	Illumina [at least 870261] (imputed)	N
915	chr3	43297688	43297689	rs6767019	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	SNRK	rs6767019-C	0.085	9E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
915	chr3	43307534	43307535	rs73072941	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs73072941-T	NR	7E-7		0.1309	[0.079-0.183] SD units increase	NR [10700000] (imputed)	N
915	chr3	43309583	43309584	rs17405916	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p22.1	NR	rs17405916-G	0.136	2E-10		0.0100139	[0.0069-0.0131] unit increase	NR [9732723] (imputed)	N
915	chr3	43321413	43321414	rs76887862	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p22.1		rs76887862-G	0.863	3E-13		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
915	chr3	43323803	43323804	rs191103647	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p22.1	NR	rs191103647-T	NR	5E-7		0.2113	[0.13-0.29] SD units decrease	NR [10700000] (imputed)	N
915	chr3	43347211	43347212	rs192099504	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3p22.1	NR	rs192099504-C	NR	7E-7	(GEE model)	0.90541	[0.55-1.26] unit decrease	NR [NR] (imputed)	N
915	chr3	43380048	43380049	rs11926254	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	3p22.1		rs11926254-C	0.0354815	8E-6		0.05122989	[0.029-0.074] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
916	chr3	43417294	43417294	rs59290516	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p22.1	NR	rs59290516-AG	NR	5E-7		0.0907	[0.055-0.126] SD units increase	NR [10700000] (imputed)	N
916	chr3	43433361	43433362	rs11715896	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p22.1	NA	rs11715896-T		1E-9		0.0114147	[0.0077-0.0151] unit decrease	Illumina [13288253] (imputed)	N
916	chr3	43438063	43438064	rs149681500	34165540	Justice AE	2021-06-24	Hum Mol Genet	Genome-wide association study of body fat distribution traits in Hispanics/Latinos from the HCHS/SOL.	Hip circumference adjusted for BMI	5,200 Hispanic or Latin American males	up to 12,341 Hispanic or Latin American males, 758 African American males, 4,281 European ancestry males	3p22.1		rs149681500-T	0.013	5E-7		5.032	z score decrease	Illumina [NR] (imputed)	N
916	chr3	43443877	43443878	rs74652506	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	3p22.1	ANO10, SNRK	rs74652506-T	NR	3E-8		1.046551	[1.03-1.06]	Affymetrix, Illumina [up to 7600000] (imputed)	N
916	chr3	43450737	43450738	rs117331810	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p22.1	NR	rs117331810-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
916	chr3	43467894	43467895	rs7650267	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p22.1	CCDC13, CCBP2, HIGD1A, SNRK, FAM198A, ANO10	rs7650267-G	0.093	2E-7	(Eotaxin )	0.04	[NR] pg/mL increase	Illumina [899892]	N
916	chr3	43515831	43515832	rs147467673	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p22.1	NR	rs147467673-C	NR	7E-7		0.225	[0.14-0.31] SD units decrease	NR [10700000] (imputed)	N
917	chr3	43597224	43597227	rs147920165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs147920165-C	0.0122	9E-13	(CYP27A1)	0.09313	NR unit increase	Illumina [1671387] (imputed)	N
917	chr3	43597224	43597227	rs147920165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs147920165-C	0.0122	3E-8	(VDAC1)	0.3343	NR unit increase	Illumina [1671387] (imputed)	N
917	chr3	43597224	43597227	rs147920165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs147920165-C	0.0122	2E-8	(SLC25A13)	0.4077	NR unit increase	Illumina [1671387] (imputed)	N
917	chr3	43597224	43597227	rs147920165	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs147920165-C	0.0122	2E-14	(BDH1)	0.8552	NR unit increase	Illumina [1671387] (imputed)	N
917	chr3	43618557	43618558	rs41289586	31102405	Labreche K	2019-05-17	Neuro Oncol	A genome-wide association study identifies susceptibility loci for primary central nervous system lymphoma at 6p25.3 and 3p22.1: a LOC network study.	Primary central nervous system lymphoma	475 European ancestry cases, 1,134 European ancestry controls	NA	3p22.1	ANO10	rs41289586-T	0.017	2E-8		3.82	[2.39-6.09]	Illumina [> 10000000] (imputed)	N
917	chr3	43621500	43621501	rs115221402	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs115221402-C	0.0122	3E-8	(VDAC1)	0.3343	NR unit increase	Illumina [1671387] (imputed)	N
917	chr3	43621500	43621501	rs115221402	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p22.1	NR	rs115221402-C	0.0122	2E-8	(SLC25A13)	0.4077	NR unit increase	Illumina [1671387] (imputed)	N
918	chr3	43683303	43683304	rs142404191	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.33	NR	rs142404191-G	NR	7E-7		0.2079	[0.13-0.29] SD units increase	NR [10700000] (imputed)	N
918	chr3	43729287	43729288	rs73087085	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.33	NR	rs73087085-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
918	chr3	43732495	43732496	rs141365045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.33	ANO10, ABHD5	rs141365045-A	NR	7E-10		0.0559966	[0.038-0.074] unit decrease	Affymetrix [319769] (imputed)	N
918	chr3	43732495	43732496	rs141365045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.33	ANO10, ABHD5	rs141365045-A	NR	5E-10		0.0564633	[0.039-0.074] unit decrease	Affymetrix [319769] (imputed)	N
918	chr3	43732495	43732496	rs141365045	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.33	ANO10, ABHD5	rs141365045-A	NR	1E-9		0.0526977	[0.035-0.071] unit decrease	Affymetrix [321169] (imputed)	N
918	chr3	43732495	43732496	rs141365045	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.33	NR	rs141365045-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
918	chr3	43742733	43742734	rs1468602	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p21.33	NR	rs1468602-T	0.9757	7E-13		0.0401	[0.029-0.051] unit increase	NR [~ 27400000] (imputed)	N
918	chr3	43752186	43752187	rs17075898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.33	ABHD5	rs17075898-G	NR	2E-8		0.0512292	[0.033-0.069] unit decrease	Affymetrix [321114] (imputed)	N
918	chr3	43752186	43752187	rs17075898	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.33		rs17075898-?	NR	1E-11				NR [~ 8900000] (imputed)	N
919	chr3	43778708	43778709	rs115421670	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.33	NR	rs115421670-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
919	chr3	43785573	43785574	rs75594032	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	3p21.33	ABHD5	rs75594032-?	NR	4E-10	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
919	chr3	43815940	43815941	rs191867523	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.33	NR	rs191867523-G	NR	6E-7		0.2639	[0.16-0.37] SD units decrease	NR [10700000] (imputed)	N
919	chr3	43833222	43833223	rs182923613	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.33	Intergenic	rs182923613-T	0.998	1E-6	(AA)	0.89	NR unit increase	Illumina [NR] (imputed)	N
919	chr3	43841806	43841807	rs189710954	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p21.33		rs189710954-T	0.0030822	4E-6		0.28392	[0.16-0.4] unit decrease	Affymetrix [15580782] (imputed)	N
919	chr3	43854319	43854320	rs6772840	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3p21.33	NR	rs6772840-A	0.0861	4E-6		0.0216	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
919	chr3	43867669	43867670	rs192944990	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	3p21.33	intergenic	rs192944990-T	0.012	1E-8	(YKL-40)	40.733	NR unit increase	Affymetrix, Illumina [> 5000000] (imputed)	N
919	chr3	43893544	43893545	rs7619544	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.33		rs7619544-C	0.293	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
920	chr3	43932731	43932732	rs115881877	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p21.33	NR	rs115881877-?	NR	1E-8				Illumina [7760689] (imputed)	N
920	chr3	43950370	43950371	rs137933720	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.33	NR	rs137933720-C	NR	4E-8		0.2566	[0.16-0.35] SD units decrease	NR [10700000] (imputed)	N
920	chr3	43954460	43954461	rs75619216	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p21.33	ABHD5	rs75619216-T	0.052	4E-9		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
920	chr3	43959699	43959700	rs527789493	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3p21.33	NR	rs527789493-?	NR	4E-6		1.24498	[0.72-1.77] unit increase	NR [13958389] (imputed)	N
920	chr3	43966222	43966223	rs73076675	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in secretors	305 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p21.33		rs73076675-?	NR	8E-10				Illumina [1128286]	N
920	chr3	44006665	44006666	rs1404481	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p21.33	NR	rs1404481-T	0.422	6E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
920	chr3	44010143	44010144	rs1388479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p21.33	TOPAZ1	rs1388479-A	0.299	3E-10		0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
920	chr3	44010143	44010144	rs1388479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p21.33	TOPAZ1	rs1388479-A	0.2989	3E-11		0.014076608	[0.0099-0.0182] unit decrease	Illumina [9339358] (imputed)	N
920	chr3	44028763	44028764	rs4017425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p21.33		rs4017425-T	NR	7E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
920	chr3	44032327	44032328	rs35283240	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3p21.33		rs35283240-?	NR	2E-10				Illumina [1128286]	N
921	chr3	44044343	44044344	rs1554654	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.33	NR	rs1554654-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
921	chr3	44044343	44044344	rs1554654	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.33		rs1554654-?	NR	5E-11				NR [~ 8900000] (imputed)	N
921	chr3	44049113	44049114	rs6441814	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Gastroesophageal reflux disease	129,080 European ancestry cases, 473,524 European ancestry controls	462,753 cases, 1,127,474 controls	3p21.33	NR	rs6441814-G	0.53	4E-9		0.028	unit increase	NR [2324712] (imputed)	N
921	chr3	44056897	44056898	rs11718455	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3p21.33	intergenic	rs11718455-T	0.2559	4E-6		0.0296	[0.017-0.042] unit decrease	NR [8041861] (imputed)	N
921	chr3	44062560	44062561	rs7625896	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.33	NR	rs7625896-A	0.6545	5E-9		1.037	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
921	chr3	44077040	44077041	rs7619427	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.33	MIR138-1	rs7619427-G	NR	4E-7		1.0857763	[1.05-1.12]	Illumina [6627481] (imputed)	N
921	chr3	44077040	44077041	rs7619427	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.33	MIR138-1	rs7619427-G	NR	3E-6	(EA)	1.0833063	[1.05-1.12]	Illumina [6627481] (imputed)	N
921	chr3	44077040	44077041	rs7619427	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p21.33	intergenic	rs7619427-G	NR	2E-7		1.0857763	[1.05-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
921	chr3	44077040	44077041	rs7619427	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.33	NR	rs7619427-G	NR	9E-7		1.0869565	[NR]	Illumina [7158791] (imputed)	N
921	chr3	44159155	44159156	rs113706999	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.32	TOPAZ1	rs113706999-T	0.976639	1E-9		0.0288173	[0.02-0.038] unit decrease	Affymetrix [12370749]	N
921	chr3	44159155	44159156	rs113706999	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.32	NR	rs113706999-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
921	chr3	44159155	44159156	rs113706999	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p21.32	NA	rs113706999-A	0.0227	2E-10		0.0424	[0.029-0.056] unit increase	NR [~ 27400000] (imputed)	N
921	chr3	44164151	44164152	rs142242702	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.32	NR	rs142242702-T	NR	8E-9		0.2454	[0.16-0.33] SD units increase	NR [10700000] (imputed)	N
922	chr3	44177198	44177198	rs79644353	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p21.32	NR	rs79644353-?	NR	2E-15		7.925	NR z score decrease	Illumina [at least 830937] (imputed)	N
922	chr3	44224672	44224673	rs11707506	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	3p21.32	NR	rs11707506-?		4E-8				NR [520857]	N
922	chr3	44226331	44226332	rs4682718	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p21.32	NR	rs4682718-?	NR	5E-6		0.0080821	[0.0046-0.0116] unit increase	Affymetrix [805426] (imputed)	N
923	chr3	44323075	44323076	rs141512860	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs141512860-G	NR	9E-10		0.2612	[0.18-0.34] SD units increase	NR [10700000] (imputed)	N
923	chr3	44327147	44327148	rs184952719	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p21.31	NR	rs184952719-?	NR	7E-6	(Native Hawaiian)	1.2616	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
923	chr3	44333323	44333324	rs13323323	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p21.31	NR	rs13323323-G	0.732786566399287	4E-6	(IGP28)	0.1593	[0.091-0.227] unit increase	Illumina [~ 2500000] (imputed)	N
923	chr3	44385813	44385814	rs936944	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3p21.31	TCAIM	rs936944-G		1E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix [13304133] (imputed)	N
923	chr3	44393135	44393136	rs9869821	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	3p21.31	NR	rs9869821-?	NR	1E-7				NR [NR] (imputed)	N
923	chr3	44424838	44424839	rs4682973	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3p21.31	TCAIM, TOPAZ1	rs4682973-?		4E-8				NR [6786993] (imputed)	N
924	chr3	44456572	44456573	rs13076052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.31		rs13076052-?	NR	1E-10				NR [~ 8900000] (imputed)	N
924	chr3	44464534	44464535	rs12054057	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p21.31	NR	rs12054057-G	0.841824	5E-8		0.0153135	[0.0098-0.0208] unit decrease	NR [NR]	N
924	chr3	44526641	44526642	rs73072664	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs73072664-C	NR	5E-10		0.2603	[0.18-0.34] SD units decrease	NR [10700000] (imputed)	N
925	chr3	44602773	44602774	rs199821054	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs199821054-GA		7E-6		0.084	[0.047-0.121] SD units increase	NR [10700000] (imputed)	N
925	chr3	44640794	44640795	rs140824699	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs140824699-C	NR	7E-10		0.2607	[0.18-0.34] SD units decrease	NR [10700000] (imputed)	N
926	chr3	44699925	44699926	rs6790697	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs6790697-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
926	chr3	44712096	44712097	rs6809116	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	3p21.31	RP11-944L7.4	rs6809116-C	0.42	2E-6		0.17	[0.092-0.248] unit increase	Illumina [4381914] (imputed)	N
926	chr3	44736492	44736493	rs4346585	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3p21.31	NR	rs4346585-T	0.6938	4E-8		0.024762189	[0.016-0.034] unit decrease	NR [NR]	N
926	chr3	44736492	44736493	rs4346585	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	3p21.31	NR	rs4346585-C	0.304	5E-12		1.0162601	[1.01-1.02]	NR [8098588] (imputed)	N
926	chr3	44739782	44739783	rs62244186	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	3p21.31	NR	rs62244186-A	0.414	1E-8		0.0138	[0.0091-0.0185] unit decrease	Illumina [NR] (imputed)	N
926	chr3	44748515	44748516	rs6795322	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p21.31	NR	rs6795322-?		7E-6				Illumina [4322238] (imputed)	N
926	chr3	44762829	44762830	rs56084453	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals	up to 192,226 European ancestry individuals	3p21.31	ZNF502	rs56084453-A	0.7868	6E-8		0.0123	[0.0078-0.0168] unit increase	Illumina [246328]	N
926	chr3	44808715	44808716	rs113187813	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Sepsis (hospital admission)	4,403 European ancestry cases, 17,612 European ancestry controls	NA	3p21.31	KIF15	rs113187813-C	0.99	2E-8		0.14	[0.1-0.18] unit decrease	NR [NR]	N
927	chr3	44850101	44850102	rs59214248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs59214248-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
927	chr3	44857003	44857004	rs6792918	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.31	KIF15	rs6792918-A	0.9449	1E-11		0.2907	[0.21-0.37] mmHg increase	Affymetrix [NR] (imputed)	N
927	chr3	44857003	44857004	rs6792918	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	3p21.31	KIF15	rs6792918-?	NR	1E-6				Affymetrix [753382]	N
927	chr3	44858130	44858131	rs141979279	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p21.31	KIF15	rs141979279-T	0.9499	1E-11		0.2702	[0.19-0.35] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
927	chr3	44865981	44865982	rs73076581	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Face memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p21.31	KIF15	rs73076581-T	NR	4E-8		0.7224384	[0.45-1] unit decrease	Illumina [> 6200000] (imputed)	N
927	chr3	44874488	44874489	rs143612100	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs143612100-G	NR	1E-9		0.249	[0.17-0.33] SD units decrease	NR [10700000] (imputed)	N
927	chr3	44902385	44902386	rs78238620	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	3p21.31	KIF15	rs78238620-A	0.053	4E-14		1.54	[1.38-1.73]	Affymetrix, Illumina [10790934] (imputed)	N
927	chr3	44911096	44911097	rs2888422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p21.31		rs2888422-?	NR	8E-8				NR [~ 8900000] (imputed)	N
927	chr3	44922140	44922141	rs1532898	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	3p21.31	TGM4	rs1532898-A	0.57	3E-7		0.069	[0.044-0.094] unit decrease	Affymetrix [9740198] (imputed)	N
927	chr3	44948673	44948674	rs1395388	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	3p21.31	TGM4	rs1395388-?	0.063	8E-6				Illumina [308166]	N
927	chr3	44950025	44950026	rs138362018	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	3p21.31	TGM4	rs138362018-G	0.01	2E-6		0.31	[0.17-0.45] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
928	chr3	44966905	44966906	rs15205	30153862	Maxwell TJ	2018-08-28	Alzheimers Res Ther	Genome-wide association study for variants that modulate relationships between cerebrospinal fluid amyloid-beta 42, tau, and p-tau levels.	Cerebrospinal fluid t-tau:AB1-42 ratio	3,146 European ancestry individuals	NA	3p21.31	ZDHHC3, TGM4, EXOSC7	rs15205-T	0.028	5E-9				Illumina [5088365] (imputed)	N
928	chr3	44986573	44986574	rs3749187	34158603	Liu X	2021-06-22	Pharmacogenomics J	New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin.	Major adverse cardiovascular events in response to aspirin and clopidogrel treatment	51 Han Chinese ancestry cases, 117 Han Chinese ancestry controls	123 Han Chinese ancestry cases, 1,580 Han Chinese ancestry controls	3p21.31		rs3749187-A	0.027	5E-6		2.99	[1.26-4.14]	NR [127834]	N
928	chr3	44996137	44996138	rs79035215	30468137	Fabbri C	2018-11-23	Br J Psychiatry	Genome-wide association study of treatment-resistance in depression and meta-analysis of three independent samples.	Depressive symptom improvement	1,378 European ancestry treatment resistant cases, 934 European ancestry responders to first treatment	NA	3p21.31	ZDHHC3	rs79035215-T	0.01	7E-7		0.31	[0.19-0.43] unit decrease	Affymetrix, Illumina [7000000] (imputed)	N
928	chr3	45000625	45000626	rs35142429	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs35142429-G	NR	4E-9		0.2392	[0.16-0.32] SD units decrease	NR [10700000] (imputed)	N
928	chr3	45036799	45036800	rs10865936	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CLEC3B	5,342 Icelandic ancestry individuals	NA	3p21.31		rs10865936-A	0.2189	1E-29		0.214839	[0.18-0.25] unit decrease	Illumina [7506463] (imputed)	N
928	chr3	45036799	45036800	rs10865936	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	CLEC3B	rs10865936-G	0.77984375	3E-18	(CLEC3B, 5701_81_3)	0.25428733	[0.2-0.31] unit increase	Illumina [> 1000000] (imputed)	N
928	chr3	45077457	45077458	rs8318	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Tetranectin plasma levels	400 French ancestry individuals	NA	3p21.31		rs8318-G	NR	1E-34		0.225	[0.2-0.25] ug/mL decrease	Illumina [5201092] (imputed)	N
929	chr3	45097508	45097509	rs7618668	33654092	Shigemizu D	2021-03-03	Transl Psychiatry	Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer's disease risk.	Alzheimer's disease	3,962 Japanese ancestry cases, 4,074 Japanese ancestry controls, 21,982 European ancestry cases, 41,944 European ancestry controls	1,216 Japanese ancestry cases, 2,446 Japanese ancestry controls	3p21.31	CLEC3B	rs7618668-?	NR	5E-6				Affymetrix [2067592] (imputed)	N
929	chr3	45153050	45153051	rs35605067	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs35605067-T	0.07832	2E-8		0.2551	[0.17-0.34] unit decrease	Illumina [18218967] (imputed)	N
929	chr3	45155841	45155842	rs73089338	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Statin-induced myopathy (severe)	32 European ancestry cases, 2,501 controls	NA	3p21.31	CDCP1	rs73089338-?	NR	2E-7		4.63	[2.7-7.96]	Illumina [654642] (imputed)	N
929	chr3	45169490	45169491	rs62242542	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs62242542-C	NR	1E-28		0.4714	[0.39-0.55] SD units increase	NR [10700000] (imputed)	N
929	chr3	45181215	45181216	rs77743040	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs77743040-G		9E-6		0.2803	[0.16-0.4] SD units decrease	NR [10700000] (imputed)	N
929	chr3	45183413	45183414	rs73089379	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p21.31	CDCP1	rs73089379-?	NR	3E-30		1.5356	[1.27-1.8] unit increase	Affymetrix [11100000] (imputed)	N
929	chr3	45200127	45200128	rs80104686	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Epithelial ovarian cancer	1,112 White British ancestry cases, 147,944 White British ancestry controls	NA	3p21.31		rs80104686-?	NR	2E-6		2.50127	[2.12-2.88]	NR [666300]	N
929	chr3	45204987	45204988	rs4683074	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	TMEM158	rs4683074-?	NR	2E-6	(aspartate)	0.23032415	[0.14-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
929	chr3	45206483	45206484	rs7621542	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	CDCP1	rs7621542-C	0.8003125	6E-9	(CDCP1, 6565_68_3)	0.17974322	[0.12-0.24] unit increase	Illumina [> 1000000] (imputed)	N
929	chr3	45212303	45212304	rs115002541	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal AB1-42 levels in normal cognition	305 European ancestry cognitively normal individuals	NA	3p21.31	CDCP1, RPS24P8, TMEM158	rs115002541-A	0.02	5E-7		2.07	[1.27-2.87] unit increase	Illumina [8257341] (imputed)	N
929	chr3	45218604	45218605	rs62244506	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDCP1	5,366 Icelandic ancestry individuals	NA	3p21.31		rs62244506-A	0.1729	2E-17		0.210253	[0.16-0.26] unit decrease	Illumina [7506463] (imputed)	N
930	chr3	45220241	45220242	rs144454897	31996736	Elsheikh SSM	2020-01-29	Sci Rep	Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease.	Longitudinal brain connectivity change (Louvain modularity)	57 European ancestry individuals	NA	3p21.31	NR	rs144454897-G	NR	2E-7		5.2	z score decrease	NR [9015039] (imputed)	N
930	chr3	45222957	45222958	rs55676934	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs55676934-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
930	chr3	45222957	45222958	rs55676934	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p21.31	NA	rs55676934-A	0.672	5E-12		0.014	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
930	chr3	45227990	45227991	rs183364169	33606446	Kim SK	2021-02-18	Med Sci Sports Exerc	Identification of Three Loci Associated with Achilles Tendon Injury Risk from a Genome-wide Association Study.	Achilles tendon injury	12,354 European ancestry cases, 483,080 European ancestry controls	NA	3p21.31	CDCP1, TMEM158	rs183364169-T	0.0014	2E-8		2.02	[NR]	Affymetrix [10183576] (imputed)	N
930	chr3	45279522	45279523	rs118109628	32733355	Ryu HS	2020-07-07	Front Neurol	Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease.	Levodopa-induced dyskinesia in levodopa treated Parkinson's disease	172 Korean ancestry cases, 569 Korean ancestry controls	NA	3p21.31	TMEM158	rs118109628-A	0.03	4E-6		9.35	[2.96-29.55]	Affymetrix [583535] (imputed)	N
930	chr3	45300604	45300605	rs33794	25044411	Liao SY	2014-07-08	Genet Epidemiol	Genome-wide association and network analysis of lung function in the Framingham Heart Study.	Lung function (forced expiratory volume in 1 second)	2,698 European ancestry individuals	NA	3p21.31	intergenic	rs33794-A	0.4367	6E-6		55.9	[NR] unit decrease	Affymetrix [300895]	N
930	chr3	45304889	45304890	rs9822723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	CDCP1	rs9822723-?	NR	4E-7	(leucine)	0.3257336	[0.2-0.45] unit decrease	Affymetrix [at least 2500000] (imputed)	N
930	chr3	45304889	45304890	rs9822723	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	CDCP1	rs9822723-?	NR	4E-6	(phenylalanine)	0.29956588	[0.17-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
930	chr3	45306633	45306634	rs17635239	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.31	NR	rs17635239-?	NR	5E-8		1.07304	[1.05-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
930	chr3	45316088	45316089	rs33802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p21.31		rs33802-?	NR	6E-8				NR [~ 8900000] (imputed)	N
930	chr3	45320985	45320986	rs9842349	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p21.31	TMEM158	rs9842349-T	0.307085	1E-8		5.67	z score decrease	NR [10847151] (imputed)	N
930	chr3	45330050	45330051	rs112627313	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.31	NR	rs112627313-A	NR	4E-6		1.07	[NR]	Illumina [7158791] (imputed)	N
930	chr3	45331926	45331927	rs62242404	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs62242404-G	NR	5E-28		0.3802	[0.31-0.45] SD units increase	NR [10700000] (imputed)	N
930	chr3	45334691	45334692	rs33807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs33807-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
931	chr3	45373441	45373442	rs9852062	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.31	LARS2	rs9852062-T	0.44315	4E-9		0.00817197	[0.0055-0.0109] unit increase	Affymetrix [12370749]	N
931	chr3	45373441	45373442	rs9852062	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs9852062-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
931	chr3	45373441	45373442	rs9852062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.31		rs9852062-?	NR	2E-12				NR [~ 8900000] (imputed)	N
931	chr3	45379776	45379777	rs854216	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	3p21.31	TMEM158, LARS2	rs854216-?	NR	5E-7	(Psoriasis)			Affymetrix, Illumina [~ 5200000]	N
931	chr3	45384682	45384683	rs146692665	24927181	Navarini AA	2014-06-13	Nat Commun	Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.	Acne (severe)	1,893 European ancestry cases, 5,132 European ancestry controls	2,063 European ancestry cases, 1,970 European ancestry controls	3p21.31	EXOSC7, KIF15, LARS2, LARS2-AS1, LIMD1, LIMD1-AS1, LZTFL1, MIR564, Mir_720, SACM1L, SLC6A20, TGM4, TMEM158, TMEM42, TRNA_Arg, ZDHHC3, BC101287, CDCP1, CLEC3B	rs146692665-T	0.0053	3E-6		2.17	[1.45-3.24]	Illumina [7300000] (imputed)	N
931	chr3	45388150	45388151	rs190548655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	Intergenic	rs190548655-T	0.999	4E-6	(AA)	0.239	unit increase	Illumina [NR] (imputed)	N
931	chr3	45406591	45406592	rs13314784	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	3p21.31	LARS2	rs13314784-T		1E-6		0.08	[0.041-0.119] unit increase	Illumina [11789982] (imputed)	N
931	chr3	45422307	45422308	rs11713522	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	418,758 European ancestry individuals	NA	3p21.31	TGM4	rs11713522-A	0.3079	1E-9		0.0646	[0.044-0.085] unit increase	NR [10813835] (imputed)	N
932	chr3	45524937	45524938	rs62243190	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs62243190-C	NR	4E-29		0.4572	[0.38-0.54] SD units decrease	NR [10700000] (imputed)	N
932	chr3	45568373	45568374	rs1482465	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p21.31	NR	rs1482465-?	NR	5E-11				Affymetrix [NR]	N
932	chr3	45569141	45569142	rs2578673	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3p21.31	LARS2	rs2578673-T	0.927	4E-16		0.4	[0.3-0.49] unit increase	Affymetrix [339439]	N
932	chr3	45598702	45598703	rs116425179	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs116425179-G		6E-9		0.1476	[0.098-0.198] SD units increase	NR [10700000] (imputed)	N
933	chr3	45636212	45636213	rs267239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs267239-?	NR	1E-12				NR [~ 8900000] (imputed)	N
933	chr3	45642180	45642181	rs59285107	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs59285107-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
933	chr3	45643647	45643648	rs34877991	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.31	LIMD1	rs34877991-C	0.3978	1E-9		0.1731	[0.12-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
933	chr3	45655419	45655420	rs189219766	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs189219766-T	0.00755	3E-8		0.8693	[0.56-1.18] unit decrease	Illumina [17914520] (imputed)	N
933	chr3	45731450	45731451	rs2742417	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	3p21.31	SACM1L	rs2742417-T	0.49	5E-7	(Bupropion, Sexual side effects)			Affymetrix [421789]	N
934	chr3	45751992	45751993	rs71288019	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 5, width of mouth relative to central midface)	2,187 European ancestry individuals	NA	3p21.31	NR	rs71288019-CT	0.456	2E-7		0.158	[0.099-0.217] unit increase	Illumina [10677593] (imputed)	N
934	chr3	45751992	45751993	rs71288019	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lip morphology	2,447 European ancestry individuals	671 European ancestry individuals	3p21.31	Intergenic	rs71288019-C	0.4543	1E-7	(Labial fissure width)	0.5144	[0.32-0.71] unit increase	Illumina [34985077] (imputed)	N
934	chr3	45765131	45765132	rs73058498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p21.31		rs73058498-G	0.08	2E-29		11.26	z score increase	Affymetrix [9061022] (imputed)	N
934	chr3	45765131	45765132	rs73058498	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p21.31		rs73058498-G	0.08	2E-17		8.47	z score increase	Affymetrix [9061022] (imputed)	N
934	chr3	45765131	45765132	rs73058498	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p21.31	NR	rs73058498-G	0.0996	1E-17				NR [9056863] (imputed)	N
934	chr3	45765131	45765132	rs73058498	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p21.31	NR	rs73058498-G	0.0996	1E-17				NR [9056863] (imputed)	N
934	chr3	45765131	45765132	rs73058498	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3p21.31	SACM1L	rs73058498-T	0.955004	9E-11	(pyroglutamine*)	0.329	[0.23-0.43] unit decrease	Illumina [13039987] (imputed)	N
934	chr3	45765131	45765132	rs73058498	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3p21.31	ROR1	rs73058498-?		2E-9				NR [7428630] (imputed)	N
934	chr3	45765131	45765132	rs73058498	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p21.31	LARS2, LIMD1, SACM1L, SLC6A20	rs73058498-?		1E-12				NR [7428630] (imputed)	N
934	chr3	45809272	45809273	rs4299518	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	3p21.31	SLC6A20	rs4299518-?	NR	3E-6	(Conditioned on rs2435357, rs1800860, rs7078220 and rs16879552)	20.0	[2.78-100.00]	Illumina [757260]	N
934	chr3	45809328	45809329	rs4327428	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3p21.31	SLC6A20	rs4327428-A	0.11	3E-12	(X-11315)	0.031	[0.023-0.039] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
934	chr3	45814093	45814094	rs17279437	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p21.31		rs17279437-A	0.09	2E-20		9.26	z score increase	Affymetrix [9061022] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	3p21.31	NR	rs17279437-A	0.11	8E-24		0.77	[0.61-0.93] unit decrease	Affymetrix [9231066] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	3p21.31	NR	rs17279437-A	0.11	1E-7		0.31	[0.19-0.43] unit decrease	Affymetrix [9231066] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Ganglion cell inner plexiform layer (GCIPL) thickness	31,434 European ancestry individuals	NA	3p21.31	NR	rs17279437-A	0.11	8E-24		0.77	[0.61-0.93] unit decrease	Affymetrix [9231066] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 10)	19,670 European ancestry individuals	NA	3p21.31		rs17279437-?	NR	4E-10				NR [9705931] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	931 European ancestry cases, 3,745 European ancestry controls	NA	3p21.31	SLC6A20, SACM1L, LIMD1, LARS2	rs17279437-A	0.104	1E-9			NR	Illumina [7289516] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33654266	Bonelli R	2021-03-02	Commun Biol	Identification of genetic factors influencing metabolic dysregulation and retinal support for MacTel, a retinal disorder.	Macular telangiectasia type 2	1,067 European or unknown ancestry cases, 3,799 European or unknown ancestry controls	NA	3p21.31	SLC6A20, SACM1L, LIMD1, LARS2	rs17279437-A	0.104	6E-10		1.73	[1.45-2.06]	Illumina [7289516] (imputed)	N
934	chr3	45814093	45814094	rs17279437	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Betaine levels	291 European ancestry individuals	NA	3p21.31		rs17279437-A	0.1053	5E-15		0.1084	unit increase	Illumina [7049691] (imputed)	N
934	chr3	45814093	45814094	rs17279437	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p21.31	SLC6A20	rs17279437-?	NR	1E-71		1.9589	[1.74-2.18] unit increase	Affymetrix [11100000] (imputed)	N
934	chr3	45814093	45814094	rs17279437	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	3p21.31	SLC6A20	rs17279437-A	0.11	8E-60	(N,N-dimethylglycine/alanine)	0.2827	[NR] unit decrease	Affymetrix [620456]	N
934	chr3	45814093	45814094	rs17279437	26352407	Raffler J	2015-09-09	PLoS Genet	Genome-Wide Association Study with Targeted and Non-targeted NMR Metabolomics Identifies 15 Novel Loci of Urinary Human Metabolic Individuality.	Urinary metabolites	3,861 European ancestry individuals	1,691European ancestry individuals	3p21.31	SLC6A20	rs17279437-A	0.11	8E-22	(2.916 ppm)	0.2039	[NR] unit decrease	Affymetrix [620456]	N
934	chr3	45814093	45814094	rs17279437	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	3p21.31	SLC6A20	rs17279437-A	0.1	2E-35	(X-11315/pyroglutamine)	0.094	[0.078-0.11] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
934	chr3	45814093	45814094	rs17279437	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3p21.31	SLC6A20	rs17279437-A	0.1	1E-20	(pyroglutamine)	0.059	[0.047-0.071] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
934	chr3	45814093	45814094	rs17279437	21572414	Suhre K	2011-05-15	Nat Genet	A genome-wide association study of metabolic traits in human urine.	Urinary metabolites	862 European ancestry male individuals	1,862 European ancestry individuals	3p21.31	SLC6A20	rs17279437-A	0.115	3E-19	(Alanine/N,N-dimethylglycine ratio)			Affymetrix [645249]	N
934	chr3	45817417	45817418	rs758386	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted TNF-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3p21.31	SLC6A20	rs758386-A		2E-7	(AA)			Illumina [NR]	N
934	chr3	45822009	45822010	rs73062378	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	3p21.31	intergenic	rs73062378-T	0.81	2E-19		0.29	unit decrease	Illumina [5270624] (imputed)	N
934	chr3	45838012	45838013	rs2271616	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	3p21.31		rs2271616-T	0.1178	2E-34		1.1546069	[1.128340128519996-1.1814852813843186]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
934	chr3	45838299	45838300	rs2531743	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3p21.31		rs2531743-?	NR	8E-10		0.917	[0.892-0.942]	Illumina [9939936] (imputed)	N
934	chr3	45838299	45838300	rs2531743	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls	NA	3p21.31		rs2531743-?	NR	7E-8		0.918	[0.89-0.947]	Illumina [31704722] (imputed)	N
934	chr3	45845921	45845922	rs17712835	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs17712835-C	0.963447	1E-10		1.0780355	[1.05-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
934	chr3	45852375	45852376	rs4683142	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	3p21.31	LZTFL1	rs4683142-G	0.15877176241480037	3E-6	(EA)	0.2773	[0.16-0.39] unit decrease	Illumina [at least 988306] (imputed)	N
934	chr3	45861931	45861932	rs13078854	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3p21.31		rs13078854-G	NR	2E-18		0.592	[0.527-0.665]	Illumina [9906551] (imputed)	N
934	chr3	45861931	45861932	rs13078854	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls	NA	3p21.31		rs13078854-?	NR	4E-15		0.57	[0.5-0.649]	Illumina [2412076] (imputed)	N
934	chr3	45861931	45861932	rs13078854	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3p21.31		rs13078854-?	NR	6E-17		0.589	[0.521-0.667]	Illumina [9901720] (imputed)	N
934	chr3	45861931	45861932	rs13078854	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls	NA	3p21.31		rs13078854-?	NR	4E-15		0.57	[0.5-0.649]	Illumina [23640711] (imputed)	N
934	chr3	45862951	45862952	rs71325088	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	2,804 European ancestry cases, 2,415 European, South Asian and Hispanic or Latin American ancestry cases, 687,911 European ancestry controls, 477,741 European, South Asian and Hispanic or Latin American ancestry controls	NA	3p21.31		rs71325088-C	NR	3E-54		1.9	[1.73-2.0]	Illumina [NR] (imputed)	N
934	chr3	45864731	45864732	rs10490770	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	3p21.31		rs10490770-C	0.08514	1E-29		1.160116	[1.130679206664483-1.1903191685173657]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
934	chr3	45864731	45864732	rs10490770	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (hospitalized vs population)	790 African ancestry cases, 20,582 African ancestry controls, 60 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,414 East Asian ancestry cases, 15,499 East Asian ancestry controls, 9,986 European ancestry cases, 1,877,672 European ancestry controls, 186 South Asian ancestry cases, 43,280 South Asian ancestry controls, 1,678 Hispanic or Latin American cases, 100,316 Hispanic or Latin American controls	NA	3p21.31		rs10490770-C	0.08141	1E-73		1.648985	[1.5622524842496601-1.740532881367777]	Affymetrix, Illumina [NR] (imputed)	N
934	chr3	45864731	45864732	rs10490770	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	COVID-19 (critical illness vs population)	133 African ancestry cases, 2,610 African ancestry controls, 304 East Asian ancestry cases, 2,450 East Asian ancestry controls, 5,101 European ancestry cases, 1,383,241 European ancestry controls, 641 Hispanic or Latin American cases, 95,479 Hispanic or Latin American controls	NA	3p21.31		rs10490770-C	0.07517	2E-61		1.8848156	[1.7483625776346177-2.031918295499278]	Illumina [NR] (imputed)	N
934	chr3	45869971	45869972	rs1129183	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p21.31	LZTFL1	rs1129183-T	NR	4E-7		1.0765421	NR	Affymetrix, Illumina [8278136] (imputed)	N
935	chr3	45876459	45876459	rs11385942	33949668	Ma Y	2021-05-05	Hum Mol Genet	Integrative Genomics Analysis Reveals a 21q22.11 Locus Contributing Risk to COVID-19.	COVID-19	3,288 European ancestry cases, 676,840 European ancestry controls	NA		SLC6A20	rs11385942-?		3E-16		1.61	[1.43-1.80]	NR [8424883] (imputed)	N
935	chr3	45876459	45876459	rs11385942	32558485	Ellinghaus D	2020-06-17	N Engl J Med	Genomewide Association Study of Severe Covid-19 with Respiratory Failure.	Severe COVID-19 infection with respiratory failure (analysis II)	1,610 European ancestry cases, 2,180 European ancestry controls	NA		SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6, XCR1	rs11385942-GA	0.09	9E-12		2.11	[1.70-2.61]	Illumina [8582560] (imputed)	N
935	chr3	45876459	45876459	rs11385942	32558485	Ellinghaus D	2020-06-17	N Engl J Med	Genomewide Association Study of Severe Covid-19 with Respiratory Failure.	Severe COVID-19 infection with respiratory failure (analysis I)	1,610 European ancestry cases, 2,205 European ancestry controls	NA		SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6, XCR1	rs11385942-GA	0.09	1E-10		1.77	[1.48-2.11]	Illumina [8582968] (imputed)	N
935	chr3	45901088	45901089	rs73064425	33307546	Pairo-Castineira E	2020-12-11	Nature	Genetic mechanisms of critical illness in Covid-19.	COVID-19 (critical illness vs population)	1,676 European ancestry cases, 8,380 European ancestry controls	2,415 European, South Asian and Hispanic or Latin American ancestry cases, 477,741 European, South Asian and Hispanic or Latin American ancestry controls, 1,128 European ancestry cases, 679,531 European ancestry controls	3p21.31	LZTFL1	rs73064425-T	NR	2E-28		1.7	NR	Illumina [4700000] (imputed)	N
935	chr3	45904713	45904714	rs1029732	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs1029732-A	0.29	1E-14		0.0661	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
935	chr3	45909023	45909024	rs35044562	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p21.31		rs35044562-?	NR	4E-14		1.813	[1.555-2.114]	Illumina [9875426] (imputed)	N
935	chr3	45909023	45909024	rs35044562	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls	NA	3p21.31		rs35044562-?	NR	5E-10		1.87	[1.557-2.246]	Illumina [21433846] (imputed)	N
935	chr3	45909023	45909024	rs35044562	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls	NA	3p21.31		rs35044562-?	NR	5E-10		1.87	[1.557-2.246]	Illumina [20506675] (imputed)	N
935	chr3	45910945	45910946	rs2191030	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p21.31	CCR9	rs2191030-T	0.227359	6E-17		0.00216619	[0.0016-0.0027] unit increase	Affymetrix [13995440] (imputed)	N
935	chr3	45918214	45918215	rs17764831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.31		rs17764831-?	NR	2E-13				NR [~ 8900000] (imputed)	N
935	chr3	45922690	45922691	rs9842595	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Naive CD4+ T cell	2,910 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs9842595-T	0.17079	1E-10		0.2342	[0.16-0.31] unit increase	Illumina [17945511] (imputed)	N
935	chr3	45922690	45922691	rs9842595	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Central Memory CD4+ T cell	2,912 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs9842595-T	0.17084	3E-8		0.2031	[0.13-0.27] unit increase	Illumina [17945888] (imputed)	N
935	chr3	45926042	45926043	rs74586549	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.31	LZTFL1	rs74586549-T	0.110045	4E-9		0.02099637	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
935	chr3	45931004	45931005	rs80136777	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs80136777-?	NR	3E-14	(CCL4)	0.474608	[0.35-0.6] unit increase	Illumina [11901634] (imputed)	N
935	chr3	45943594	45943595	rs17765088	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs17765088-G	NR	6E-84		0.4577	[0.41-0.5] SD units increase	NR [10700000] (imputed)	N
935	chr3	45945131	45945132	rs17714228	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3p21.31		rs17714228-?	NR	2E-7		0.11538574	[0.072-0.159] unit increase	Illumina [9939936] (imputed)	N
935	chr3	45947065	45947066	rs79179998	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD45RA+ CD4+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs79179998-A	0.20933	1E-11		0.2304	[0.16-0.3] unit increase	Illumina [17954450] (imputed)	N
935	chr3	45949239	45949240	rs75192040	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p21.31	NR	rs75192040-T	NR	5E-15		0.0752	[0.056-0.094] unit increase	Affymetrix [9000000] (imputed)	N
935	chr3	45956059	45956060	rs4683148	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs4683148-T	0.41599600000000003	8E-13		1.0313327	[1.02-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
935	chr3	45995553	45995554	rs142055939	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	3p21.31	NR	rs142055939-C	0.02	2E-6		1.48	1.26-1.75	NR [at least 8482392] (imputed)	N
935	chr3	45995553	45995554	rs142055939	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder or bipolar disorder or schizophrenia	1,622 European ancestry attempters with major depressive disorder, 8,786 European ancestry nonattempters with major depressive disorder, 3,264 European ancestry attempters with bipolar disorder, 5,500 European ancestry nonattempters with bipolar disorder, 1,683 European ancestry attempters with schizophrenia, 2,946 European ancestry nonattempters with schizophrenia	NA	3p21.31	NR	rs142055939-C	0.02	2E-6		1.48	1.26-1.75	NR [at least 8482392] (imputed)	N
935	chr3	45995724	45995724	rs140221038	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3p21.31		rs140221038-?	NR	1E-13		0.5297379	[0.39-0.67] unit increase	Illumina [9906551] (imputed)	N
935	chr3	45995724	45995724	rs140221038	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3p21.31		rs140221038-?	NR	1E-12		0.5374411	[0.39-0.68] unit increase	Illumina [9901720] (imputed)	N
935	chr3	46003734	46003735	rs41289620	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p21.31		rs41289620-T	NR	3E-31		0.121	[0.1-0.14] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
935	chr3	46003734	46003735	rs41289620	31790847	Hou R	2019-11-29	Bone	Genetic variants affecting bone mineral density and bone mineral content at multiple skeletal sites in Hispanic children.	Bone mineral content	1,030 Hispanic or Latin American children	NA	3p21.31	FYCO1	rs41289620-T	0.02	4E-6	(lumbar spine)	0.8	[0.45-1.15] g increase	Illumina [> 1100000]	N
936	chr3	46008086	46008087	rs13079869	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3p21.31	NR	rs13079869-?		3E-10	(LTF)	0.3456	[NR] unit increase	Illumina [NR]	N
936	chr3	46026211	46026212	rs202063506	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs202063506-AT		1E-13		0.1215	[0.089-0.154] SD units increase	NR [10700000] (imputed)	N
936	chr3	46055715	46055716	rs13081151	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p21.31	NR	rs13081151-A	NR	6E-20		0.0716	[0.056-0.087] unit increase	Illumina [~ 9000000] (imputed)	N
936	chr3	46068680	46068681	rs58035200	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CXCL16	5,361 Icelandic ancestry individuals	NA	3p21.31		rs58035200-T	0.2354	3E-12		0.151833	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
936	chr3	46095103	46095104	rs35772789	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3p21.31		rs35772789-?	NR	3E-6		0.1030807	[0.06-0.146] unit increase	Illumina [9939936] (imputed)	N
936	chr3	46095221	46095222	rs183817891	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p21.31		rs183817891-?	NR	1E-11		0.5624724	[0.4-0.73] unit increase	Illumina [9875426] (imputed)	N
936	chr3	46095221	46095222	rs183817891	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	3p21.31		rs183817891-?	NR	5E-10		0.5780579	[0.4-0.76] unit increase	Illumina [9842460] (imputed)	N
936	chr3	46107692	46107692	rs201040623	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p21.31		rs201040623-TCCTC	0.099235	3E-6		0.051959	[0.03-0.074] unit increase	Affymetrix [15580782] (imputed)	N
936	chr3	46107692	46107692	rs201040623	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p21.31		rs201040623-TCCTC	0.099235	4E-6		0.052569	[0.03-0.075] unit increase	Affymetrix [15580782] (imputed)	N
936	chr3	46122880	46122881	rs1491958	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs1491958-T	0.06649899999999997	5E-21		1.0769322	[1.06-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
936	chr3	46123186	46123186	rs111793438	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3p21.31		rs111793438-?	NR	2E-11		0.379308	[0.27-0.49] unit decrease	Illumina [9906551] (imputed)	N
936	chr3	46123186	46123186	rs111793438	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3p21.31		rs111793438-?	NR	8E-11		0.3899282	[0.27-0.51] unit decrease	Illumina [9901720] (imputed)	N
936	chr3	46123332	46123333	rs9838450	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3p21.31	NR	rs9838450-?		4E-12	(LTF)	0.3232	[NR] unit increase	Illumina [NR]	N
937	chr3	46148114	46148115	rs75411903	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p21.31	NR	rs75411903-?	NR	5E-6		10509.731	NR unit decrease	Illumina [2379855]	N
937	chr3	46168313	46168314	rs1602580	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-X-C motif chemokine 16 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs1602580-T	0.2	1E-22		0.0931	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
937	chr3	46171822	46171823	rs75182702	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p21.31	XCR1, CCR1	rs75182702-A	0.063	3E-9		5.96	z-score increase	Affymetrix [4314223] (imputed)	N
937	chr3	46173071	46173072	rs13063635	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p21.31	intergenic	rs13063635-C	0.0996	4E-9		0.03536307	[0.024-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr3	46173209	46173210	rs71327027	32944759	Deshmukh HA	2020-09-18	J Clin Endocrinol Metab	Genome-Wide Association Analysis of Pancreatic Beta Cell Glucose Sensitivity.	Pancreatic beta-cell glucose sensitivity	3,017 European ancestry individuals	2,689 European ancestry individuals	3p21.31	CCR3	rs71327027-G	NR	7E-7		4.966	NR z score decrease	Illumina [8978282] (imputed)	N
937	chr3	46174935	46174936	rs7634822	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3p21.31		rs7634822-C	NR	3E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
937	chr3	46177095	46177096	rs13068572	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3p21.31		rs13068572-?	NR	5E-8				Affymetrix [NR] (imputed)	N
937	chr3	46177095	46177096	rs13068572	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p21.31		rs13068572-G	0.903	2E-22				Affymetrix [10369434] (imputed)	N
937	chr3	46177991	46177992	rs4493469	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p21.31	NR	rs4493469-T	NR	2E-24		0.0784	[0.063-0.093] unit decrease	Illumina [~ 9000000] (imputed)	N
937	chr3	46177991	46177992	rs4493469	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs4493469-C	0.907556	2E-43		1.1034003	[1.09-1.12]	Affymetrix, Illumina [9851866] (imputed)	N
937	chr3	46187521	46187522	rs7648466	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p21.31	NR	rs7648466-G	NR	9E-9		0.1056	[0.07-0.141] SD units decrease	NR [10700000] (imputed)	N
937	chr3	46187706	46187707	rs4683184	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs4683184-A	0.69041	7E-17		0.2224	[0.17-0.27] unit increase	Illumina [18218967] (imputed)	N
937	chr3	46187706	46187707	rs4683184	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs4683184-A	0.68842	3E-27		0.3253	[0.27-0.38] unit increase	Illumina [17914520] (imputed)	N
937	chr3	46187706	46187707	rs4683184	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14+ CD16- monocyte	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs4683184-A	0.69041	1E-20		0.2454	[0.19-0.3] unit increase	Illumina [18218967] (imputed)	N
937	chr3	46187706	46187707	rs4683184	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p21.31	CCR1	rs4683184-G	0.36172	1E-11		0.0130147	[0.0092-0.0168] unit decrease	NR [13737936] (imputed)	N
937	chr3	46193898	46193899	rs112720180	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3p21.31	CCR1	rs112720180-G	0.11112	2E-6		1.06	[1.04-1.09]	NR [8126035] (imputed)	N
937	chr3	46194637	46194638	rs6798398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31		rs6798398-T	0.527579	2E-9		0.015637126	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
937	chr3	46194637	46194638	rs6798398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31		rs6798398-C	0.472385	5E-17		0.023370204	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
937	chr3	46205685	46205686	rs7616215	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	3p21.31	CCR1, CCR3	rs7616215-C	0.654	4E-13		1.39	[1.27-1.52]	Illumina [779465] (imputed)	N
937	chr3	46205685	46205686	rs7616215	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3p21.31	CCR1	rs7616215-C	0.361	9E-9	(conditioned on rs2097282)	1.12		Illumina [139553]	N
937	chr3	46208309	46208310	rs2087726	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	3p21.31	CCR3	rs2087726-G	NR	9E-10		0.7893		Illumina [up to 1244428] (imputed)	N
937	chr3	46234466	46234467	rs13097666	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p21.31		rs13097666-T	NR	5E-9		0.0236	[0.016-0.031] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
937	chr3	46235200	46235201	rs13098911	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p21.31	CCRL2, CCR5, CCR9, CCR1, CCR2, CCR3	rs13098911-A	0.10	3E-17		1.3	[1.23-1.39]	Illumina [292387]	N
937	chr3	46240825	46240826	rs34611049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.31		rs34611049-?	NR	1E-8				NR [~ 8900000] (imputed)	N
937	chr3	46244279	46244280	rs3136668	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3p21.31		rs3136668-?	NR	8E-6		0.285105	[0.16-0.41] unit decrease	Illumina [9906551] (imputed)	N
937	chr3	46250373	46250374	rs41432345	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	3p21.31	CCR1	rs41432345-C		2E-19		1.3497887		Illumina [252970]	N
937	chr3	46250459	46250460	rs75526024	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.31		rs75526024-?	NR	4E-12				NR [~ 8900000] (imputed)	N
937	chr3	46250651	46250652	rs3181077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	3p21.31		rs3181077-T	NR	7E-19		0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [20529536] (imputed)	N
937	chr3	46250651	46250652	rs3181077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3p21.31	CCR3	rs3181077-T	0.717914	2E-66		0.04246708	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr3	46250651	46250652	rs3181077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p21.31	CCR3	rs3181077-T	0.717893	3E-72		0.04451119	[0.04-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
937	chr3	46250651	46250652	rs3181077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs3181077-T	0.745941	5E-57				Affymetrix, Illumina [19905671] (imputed)	N
937	chr3	46250651	46250652	rs3181077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3p21.31	NR	rs3181077-T	0.718492	2E-59		0.037064	[0.033-0.042] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
937	chr3	46250651	46250652	rs3181077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3p21.31	CCR3	rs3181077-T	0.7172	1E-19		0.03513781	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr3	46250651	46250652	rs3181077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3p21.31	CCR3	rs3181077-T	0.7171	4E-20		0.03534761	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr3	46250651	46250652	rs3181077	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3p21.31	CCR3	rs3181077-T	0.7171	2E-16		0.03183742	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
937	chr3	46250651	46250652	rs3181077	25986216	Toyoda H	2015-05-15	Brain Behav Immun	A polymorphism in CCR1/CCR3 is associated with narcolepsy.	Narcolepsy with cataplexy	409 Japanese ancestry cases, 1,562 Japanese ancestry controls	240 Japanese ancestry cases, 869 Japanese ancestry controls	3p21.31	CCR1, CCR3	rs3181077-T	0.870	6E-6		1.63	[1.32-2.02]	Affymetrix [525196]	N
937	chr3	46250750	46250751	rs74935550	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p21.31		rs74935550-?	NR	7E-6		1.28519	[1.18-1.39]	NR [685523]	N
937	chr3	46253649	46253650	rs79893749	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	3p21.31	CCR1, CCR3	rs79893749-?	0.85	2E-7	(additive model)	1.2820514	[1.16-1.39]	Illumina [123003]	N
937	chr3	46253811	46253812	rs13095946	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3p21.31		rs13095946-?	NR	6E-6		0.3042465	[0.17-0.44] unit decrease	Illumina [9901720] (imputed)	N
937	chr3	46255261	46255262	rs57115330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p21.31		rs57115330-C	NR	4E-8		0.022	[0.014-0.03] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
937	chr3	46258901	46258902	rs2201150	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p21.31		rs2201150-?	NR	4E-11				NR [~ 8900000] (imputed)	N
937	chr3	46264617	46264618	rs2007374	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3p21.31		rs2007374-G	0.519	2E-9				Affymetrix [10369434] (imputed)	N
938	chr3	46270325	46270326	rs114515123	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime nap	113,054 European ancestry cases and controls	NA	3p21.31	NR	rs114515123-T	0.0011	3E-8		0.35	[0.22-0.48] unit increase	Affymetrix [at least 12428592] (imputed)	N
938	chr3	46272161	46272162	rs1542756	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs1542756-T	0.087	5E-20		0.1203	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
938	chr3	46274258	46274259	rs67676925	26546613	Gutierrez-Achury J	2016-01-01	Hum Mol Genet	Functional implications of disease-specific variants in loci jointly associated with coeliac disease and rheumatoid arthritis.	Celiac disease and Rheumatoid arthritis	371 South Asian ancestry celiac disease cases, 3,138 European ancestry celiac disease cases,  4,418 European ancestry rheumatoid arthritis cases,  509 South Asian ancestry celiac disease controls, 2,473 European ancestry celiac disease controls, 3,300 European ancestry rheumatoid arthritis controls, 8,872 celiac disease cases, 9,401 rheumatoid arthritis cases, 4,845 celiac disease controls, 9,627 rheumatoid arthritis controls	NA	3p21.31	CCR1, CCR3	rs67676925-?	NR	2E-11		1.18		Illumina [109572]	N
938	chr3	46277576	46277577	rs79815064	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	3p21.31	CCR1, CCR3	rs79815064-A	NR	3E-11		1.25	[1.17-1.34]	Illumina [7461261] (imputed)	N
938	chr3	46277576	46277577	rs79815064	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs79815064-G	NR	3E-126		0.5505	[0.51-0.6] SD units increase	NR [10700000] (imputed)	N
938	chr3	46279951	46279956	rs145370168	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD62L+ myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs145370168-C	0.1513	3E-11		0.2651	[0.19-0.34] unit increase	Illumina [17919786] (imputed)	N
938	chr3	46281743	46281744	rs13096142	24999842	Garner C	2014-07-07	PLoS One	Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.	Celiac disease	1,550 European ancestry cases, 3,084 European ancestry controls	NA	3p21.31	CCR3, CCR2	rs13096142-?		4E-8		1.3	[1.18-1.43]	Illumina [517345]	N
938	chr3	46282390	46282391	rs12636651	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p21.31	CCR3, CCR2	rs12636651-G	0.403	7E-9	(MCP1 )	0.05	[NR] pg/mL increase	Illumina [899892]	N
938	chr3	46282390	46282391	rs12636651	23017229	Voruganti VS	2012-09-24	Cytokine	Genome-wide association replicates the association of Duffy antigen receptor for chemokines (DARC) polymorphisms with serum monocyte chemoattractant protein-1 (MCP-1) levels in Hispanic children.	Monocyte chemoattractant protein-1 levels	815 Hispanic children	NA	3p21.31	CCR3	rs12636651-?	NR	7E-9				Illumina [NR]	N
938	chr3	46298372	46298373	rs13325613	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p21.31	CCR3	rs13325613-T	0.0659	4E-25		0.0741414	[0.06-0.088] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr3	46303183	46303184	rs3091309	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p21.31	NR	rs3091309-G	NR	4E-10		0.1283	[0.089-0.168] SD units decrease	NR [10700000] (imputed)	N
938	chr3	46303183	46303184	rs3091309	27397699	Pei YF	2016-07-07	Bone	Genome-wide association meta-analyses identified 1q43 and 2q32.2 for hip Ward's triangle areal bone mineral density.	Bone mineral density (Ward's triangle area)	4,305 European ancestry individuals,1,579 Chinese Han ancestry individuals, 845 African-American individuals, 446 Hispanic individuals		3p21.31	CCR3	rs3091309-G	NR	3E-6		0.12	[NR] unit increase	Affymetrix, Illumina [at least 9551331] (imputed)	N
938	chr3	46307312	46307313	rs138346219	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p21.31		rs138346219-G	NR	9E-12		0.1788	[0.13-0.23] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
938	chr3	46307312	46307313	rs138346219	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Eosinophil counts	440,275 European ancestry individuals	NA	3p21.31		rs138346219-?	NR	2E-16		0.2388	[0.18-0.3] unit increase	NR [9800000] (imputed)	N
938	chr3	46307312	46307313	rs138346219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.31	CCR3	rs138346219-G	0.00112699999999999	3E-12		0.22897972	[0.16-0.29] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46307312	46307313	rs138346219	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p21.31	CCR3	rs138346219-G	0.00112699999999999	1E-13		0.2423528	[0.18-0.31] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46310920	46310921	rs4413345	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3p21.31	NR	rs4413345-?		4E-19	(LTF)	0.4074	[NR] unit increase	Illumina [NR]	N
938	chr3	46318975	46318976	rs6441950	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p21.31		rs6441950-T	0.228	2E-21				Affymetrix [10369434] (imputed)	N
938	chr3	46319892	46319892	rs35345998	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31		rs35345998-CA	0.300898	2E-50		0.053852748	[0.047-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46322170	46322171	rs28677778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p21.31		rs28677778-A	0.934	2E-22				Affymetrix [10369434] (imputed)	N
938	chr3	46322712	46322713	rs9872023	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31		rs9872023-T	0.06511	2E-53		0.081648484	[0.071-0.092] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46323651	46323652	rs35520592	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31		rs35520592-C	0.167706	3E-16		0.03951048	[0.03-0.049] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46326847	46326848	rs77116118	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p21.31		rs77116118-?	NR	3E-6		0.7037993	[0.41-1] unit decrease	Illumina [9875426] (imputed)	N
938	chr3	46334060	46334061	rs111227877	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	3p21.31	NR	rs111227877-G	NR	4E-6		1.7187	NR	Illumina [at least 560000] (imputed)	N
938	chr3	46334669	46334670	rs4683205	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs4683205-A	0.472469	5E-106		1.097006	[1.09-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
938	chr3	46339811	46339812	rs9990343	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	3p21.31	intergenic	rs9990343-?	0.48	4E-7				Illumina [448293]	N
938	chr3	46341914	46341916	rs71822640	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p21.31		rs71822640-A	0.0643010000000001	4E-10		0.028198576	[0.019-0.037] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46346024	46346025	rs10510751	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p21.31		rs10510751-T	0.927	7E-15				Affymetrix [10369434] (imputed)	N
938	chr3	46346024	46346025	rs10510751	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p21.31	NR	rs10510751-T	NR	2E-21		0.0794	[0.063-0.096] unit decrease	Illumina [~ 9000000] (imputed)	N
938	chr3	46346024	46346025	rs10510751	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31		rs10510751-G	0.073447	2E-44		0.063952886	[0.055-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46352383	46352384	rs6441961	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3p21.31	CCR1, CCR3	rs6441961-A	0.30	3E-7		1.21	[1.13-1.30]	Illumina [310605]	N
938	chr3	46354443	46354444	rs182089148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31	UQCRC2P1	rs182089148-T	0.00462899999999999	3E-18		0.15393674	[0.12-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46354443	46354444	rs182089148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31	UQCRC2P1	rs182089148-T	0.00462700000000005	8E-20		0.16121954	[0.13-0.2] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46354618	46354619	rs140058837	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3p21.31		rs140058837-?	NR	5E-8				Affymetrix [NR] (imputed)	N
938	chr3	46354618	46354619	rs140058837	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p21.31		rs140058837-A	0.965	3E-20				Affymetrix [10369434] (imputed)	N
938	chr3	46354618	46354619	rs140058837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31	UQCRC2P1	rs140058837-G	0.034463	1E-18		0.05739817	[0.045-0.07] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46354618	46354619	rs140058837	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31	UQCRC2P1	rs140058837-G	0.034453	8E-10		0.04563518	[0.031-0.06] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46354618	46354619	rs140058837	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p21.31	UQCRC2P1	rs140058837-G	0.0351	1E-24		0.1007789	[0.082-0.12] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr3	46354838	46354839	rs6441963	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31	UQCRC2P1	rs6441963-C	0.646685	2E-23		0.055261936	[0.044-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
938	chr3	46357583	46357584	rs139028709	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p21.31	UQCRC2P1	rs139028709-A	0.0355	4E-17		0.0824002	[0.063-0.102] unit decrease	Affymetrix [~ 2500000] (imputed)	N
938	chr3	46364859	46364860	rs112313229	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3p21.31		rs112313229-G	0.955	5E-11				Affymetrix [10369434] (imputed)	N
938	chr3	46364859	46364860	rs112313229	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31		rs112313229-A	0.045591	2E-21		0.055247083	[0.044-0.067] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46364859	46364860	rs112313229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p21.31	intergenic	rs112313229-A	0.0465	6E-12		0.05995081	[0.043-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr3	46366953	46366954	rs2187670	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	3p21.31	SCHIP1, IL12A	rs2187670-?	NR	4E-8		0.116	unit increase	Illumina [up to 143074]	N
938	chr3	46367009	46367010	rs62244840	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31		rs62244840-C	0.692374	9E-11		0.03754745	[0.026-0.049] unit increase	Affymetrix [93095623] (imputed)	N
938	chr3	46368901	46368901	rs199986244	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs199986244-AT	0.05313	2E-13		0.483	[0.35-0.61] unit decrease	Illumina [17919786] (imputed)	N
938	chr3	46368901	46368901	rs199986244	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD62L+ myeloid Dendritic Cell	2,870 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs199986244-AT	0.05313	9E-16		0.5334	[0.4-0.66] unit decrease	Illumina [17919786] (imputed)	N
938	chr3	46370802	46370803	rs2888526	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs2888526-T	0.094	3E-102		0.2727	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
938	chr3	46370802	46370803	rs2888526	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs2888526-?	NR	2E-9	(MCP-1)	0.556154	[0.37-0.74] unit increase	Illumina [11901634] (imputed)	N
938	chr3	46378024	46378025	rs2097282	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3p21.31	CCR3, CCR2	rs2097282-?	0.314	1E-20		1.2		Illumina [139553]	N
938	chr3	46378254	46378255	rs71619641	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p21.31	intergenic	rs71619641-G	0.079	2E-26		0.07150476	[0.058-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
938	chr3	46383921	46383922	rs62242983	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	3p21.31	CCR3, CCR2	rs62242983-?	NR	7E-14		0.05363	[0.04-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
938	chr3	46384203	46384204	rs113341849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL4L1	5,363 Icelandic ancestry individuals	NA	3p21.31		rs113341849-A	0.118	9E-102		0.591205	[0.54-0.65] unit increase	Illumina [7506463] (imputed)	N
938	chr3	46384203	46384204	rs113341849	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AXL	5,358 Icelandic ancestry individuals	NA	3p21.31		rs113341849-A	0.118	3E-88		0.558972	[0.5-0.61] unit increase	Illumina [7506463] (imputed)	N
938	chr3	46384203	46384204	rs113341849	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	3p21.31		rs113341849-?	NR	6E-8		0.046	NR unit increase	NR [5896510] (imputed)	N
938	chr3	46384203	46384204	rs113341849	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs113341849-G	NR	1E-139	(conditioned on rs138591554)	0.608	SD units decrease	NR [10700000] (imputed)	N
938	chr3	46384203	46384204	rs113341849	23696881	Wood AR	2013-05-16	PLoS One	Imputation of variants from the 1000 Genomes Project modestly improves known associations and can identify low-frequency variant-phenotype associations undetected by HapMap based imputation.	Blood protein levels	up to 1,209 European ancestry individuals	NA	3p21.31	CCR2	rs113341849-?	NR	2E-11	(Macrophage inflammatory protein-1b)			Illumina [up to 10879115] (imputed)	N
938	chr3	46396937	46396938	rs3092963	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs3092963-G	0.41856	1E-55		0.4405	[0.39-0.49] unit decrease	Illumina [17922630] (imputed)	N
938	chr3	46396937	46396938	rs3092963	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD62L+ plasmacytoid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs3092963-G	0.41856	2E-55		0.4395	[0.39-0.49] unit decrease	Illumina [17922630] (imputed)	N
938	chr3	46399207	46399208	rs1799864	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL2	5,365 Icelandic ancestry individuals	NA	3p21.31		rs1799864-A	0.09043	7E-12		0.223308	[0.16-0.29] unit increase	Illumina [7506463] (imputed)	N
938	chr3	46399207	46399208	rs1799864	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	3p21.31		rs1799864-A	0.280146	8E-22		0.0467821	[0.037-0.056] unit decrease	Illumina [13471440] (imputed)	N
938	chr3	46399207	46399208	rs1799864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p21.31	CCR2	rs1799864-A	0.0746	1E-11		0.04588159	[0.033-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46399763	46399764	rs200491743	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Monocyte count	443,529 European ancestry individuals	NA	3p21.31		rs200491743-?	NR	7E-11		0.241697	[0.17-0.32] unit decrease	NR [9800000] (imputed)	N
939	chr3	46399763	46399764	rs200491743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31	CCR2	rs200491743-A	6.77000000000039E-4	8E-12		0.33037895	[0.24-0.43] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr3	46399763	46399764	rs200491743	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31	CCR2	rs200491743-A	6.7600000000001E-4	5E-10		0.30054322	[0.21-0.4] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr3	46402626	46402627	rs762789	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CCR2 on CD14- CD16-	3,629 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs762789-A	0.44696	9E-14		0.1859	[0.14-0.23] unit decrease	Illumina [18218967] (imputed)	N
939	chr3	46404162	46404163	rs2373226	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3p21.31	Intergenic	rs2373226-T	NR	6E-8		0.0231235	[0.015-0.031] unit increase	Illumina [13520550] (imputed)	N
939	chr3	46404741	46404742	rs34030880	32868391	Leng RX	2020-08-31	Ann Rheum Dis	Identification of new susceptibility loci associated with rheumatoid arthritis.	Rheumatoid arthritis	5,900 East Asian cases, 20,521 East Asian controls, 14,361 European ancestry cases, 43,923 European ancestry controls	NA	3p21.31	CCR2	rs34030880-A		3E-8		1.08	[1.05-1.11]	Illumina [NR] (imputed)	N
939	chr3	46406366	46406367	rs2213290	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p21.31		rs2213290-C	0.591	7E-44				Affymetrix [10369434] (imputed)	N
939	chr3	46406366	46406367	rs2213290	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31	CCR2, RP11-24F11.2	rs2213290-T	0.409259	2E-13		0.035325073	[0.026-0.045] unit increase	Affymetrix [93095623] (imputed)	N
939	chr3	46406366	46406367	rs2213290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs2213290-T	0.405435	4E-78				Affymetrix, Illumina [23467995] (imputed)	N
939	chr3	46406366	46406367	rs2213290	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p21.31	NR	rs2213290-T	0.407826	1E-75		0.035585	[0.032-0.039] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
939	chr3	46406366	46406367	rs2213290	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p21.31	CCR2, RP11-24F11.2	rs2213290-T	0.4084	1E-33		0.04394357	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46406366	46406367	rs2213290	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p21.31	CCR2, RP11-24F11.2	rs2213290-T	0.4085	2E-25		0.03789086	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46412558	46412559	rs1800024	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p21.31	CCR5, RP11-24F11.2	rs1800024-T	0.0763	1E-9		0.04088544	[0.028-0.054] unit increase	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46414946	46414978	rs333	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs333-?	NR	3E-26	(CCL4)	0.634518	[0.52-0.75] unit increase	Illumina [11901634] (imputed)	N
939	chr3	46414974	46414975	rs62625034	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	3p21.31	CCR5	rs62625034-G	0.9	8E-83		0.55	unit decrease	Illumina [5270624] (imputed)	N
939	chr3	46418688	46418689	rs3087253	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.31		rs3087253-?	NR	4E-8				NR [~ 8900000] (imputed)	N
939	chr3	46423927	46423928	rs62246129	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs62246129-T		1E-19		0.2902	[0.23-0.35] SD units decrease	NR [10700000] (imputed)	N
939	chr3	46428189	46428190	rs6441975	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	3p21.31	CCRL2	rs6441975-?	0.31	5E-6		1.483	[NR]	Affymetrix [700022]	N
939	chr3	46428657	46428658	rs1001007	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3p21.31	RP11-24F11.2	rs1001007-?	NR	2E-8	(subset analysis)			Illumina [130052]	N
939	chr3	46444404	46444405	rs2187674	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31	RP11-24F11.2	rs2187674-T	0.39391	1E-11		0.0324931	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
939	chr3	46447971	46447972	rs11574435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p21.31		rs11574435-T	NR	9E-9		0.0203	[0.013-0.027] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
939	chr3	46449863	46449864	rs6808835	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	CCR3, CCRL2, CCR2, RP11-24F11.2, CCR5, LTF, UQCRC2P1	rs6808835-T	0.1384152	3E-11	(EA, C-C motif chemokine 4-like)	0.4302	[0.3-0.56] unit increase	Affymetrix [509946]	N
939	chr3	46449863	46449864	rs6808835	25340798	Kauwe JS	2014-10-23	PLoS Genet	Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.	Cerebrospinal fluid levels of Alzheimer's disease-related proteins	574 individuals	NA	3p21.31	CCRL2, CCR5, CCR2, LTF, CCR3	rs6808835-G	NR	2E-13	(Macrophage Inflammatory protein-1 beta)			Illumina [5815690] (imputed)	N
939	chr3	46449977	46449978	rs11266744	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p21.31	CCRL2	rs11266744-C	0.3957	3E-9		0.02164235	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46451679	46451680	rs1015164	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p21.31		rs1015164-?	NR	3E-8		1.06587	[1.04-1.09]	NR [685523]	N
939	chr3	46451679	46451680	rs1015164	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3p21.31	CCRL2	rs1015164-A	0.792	1E-15		0.23	[0.18-0.29] unit decrease	Affymetrix [339439]	N
939	chr3	46451679	46451680	rs1015164	26553974	McLaren PJ	2015-11-09	Proc Natl Acad Sci U S A	Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load.	Setpoint viral load in HIV-1 infection	6,315 European ancestry cases	NA	3p21.31	CCRL2	rs1015164-?	NR	2E-19				Affymetrix, Illumina [~ 8000000] (imputed)	N
939	chr3	46451679	46451680	rs1015164	21502085	Troyer JL	2011-05-01	J Infect Dis	Genome-wide association study implicates PARD3B-based AIDS restriction.	AIDS progression	755 European ancestry seroconverter cases	NA	3p21.31	LTF	rs1015164-?	0.31	9E-6		1.46	[NR]	Affymetrix [700022]	N
939	chr3	46453993	46453994	rs6441978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	3p21.31	NR	rs6441978-T	0.67237	6E-21		0.047724	[0.038-0.058] SD units increase	Affymetrix, Illumina [16289044] (imputed)	N
939	chr3	46457411	46457412	rs113010081	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p21.31		rs113010081-?	NR	5E-8				Affymetrix [NR] (imputed)	N
939	chr3	46457411	46457412	rs113010081	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	3p21.31		rs113010081-?	NR	5E-8				Affymetrix [NR] (imputed)	N
939	chr3	46457411	46457412	rs113010081	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	C-C motif chemokine 4 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs113010081-T	0.88	4E-352		0.5982	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
939	chr3	46457411	46457412	rs113010081	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p21.31	CCRL2	rs113010081-C	0.116672	1E-10		0.022963373	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
939	chr3	46457411	46457412	rs113010081	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p21.31	CCRL2, LTF	rs113010081-?	NR	4E-19		0.9206	[0.71-1.13] unit increase	Affymetrix [11100000] (imputed)	N
939	chr3	46457411	46457412	rs113010081	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	3p21.31	CCR1, CCRL2, CCR5, CCR3, CCR2	rs113010081-?		2E-6				Illumina [9578670] (imputed)	N
939	chr3	46457411	46457412	rs113010081	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	CCLR2	rs113010081-C	NR	4E-140		0.5954	[0.55-0.64] SD units increase	NR [10700000] (imputed)	N
939	chr3	46457411	46457412	rs113010081	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	FLJ78302, LTF, CCR1, CCR2, CCR3, CCR5	rs113010081-G	0.1073	9E-10	(EA)	1.1354866	[1.09-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
939	chr3	46457411	46457412	rs113010081	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	FLJ78302, LTF, CCR1, CCR2, CCR3, CCR5	rs113010081-G	0.1073	4E-8	(EA)	1.0966138	[1.06-1.13]	Affymetrix, Illumina [~ 9000000] (imputed)	N
939	chr3	46457411	46457412	rs113010081	25751624	Onengut-Gumuscu S	2015-04-01	Nat Genet	Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers.	Type 1 diabetes	6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios	NA	3p21.31	CCR5	rs113010081-T	0.89	5E-8		1.1764705		Illumina [135870]	N
939	chr3	46459039	46459040	rs188543105	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3p21.31	RP11-24F11.5	rs188543105-A	0.996	3E-7		0.4448	[0.27-0.62] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
939	chr3	46460793	46460794	rs2097276	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p21.31	NR	rs2097276-T	NR	2E-23		0.0643	[0.052-0.077] unit increase	Illumina [~ 9000000] (imputed)	N
939	chr3	46460887	46460888	rs112347425	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p21.31	NR	rs112347425-C	NR	9E-9		0.158	[0.1-0.21] SD units decrease	NR [10700000] (imputed)	N
939	chr3	46462903	46462904	rs35359910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p21.31		rs35359910-A	NR	4E-50		0.0422	[0.037-0.048] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
939	chr3	46462908	46462909	rs34042186	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p21.31	intergenic	rs34042186-A	0.1257	3E-23		0.05381013	[0.043-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
939	chr3	46464939	46464940	rs34390431	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs34390431-A	0.6591	3E-54		1.0724856	[1.06-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
939	chr3	46466547	46466548	rs547055536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs547055536-G	0.998724	1E-16				Affymetrix, Illumina [19872809] (imputed)	N
939	chr3	46466547	46466548	rs547055536	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p21.31	NR	rs547055536-G	0.998811	2E-17		0.254115	[0.2-0.31] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
939	chr3	46483535	46483536	rs12629300	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3p21.31		rs12629300-T	0.18443900000000002	1E-23		1.0581166	[1.04-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
939	chr3	46483959	46483960	rs113234727	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3p21.31		rs113234727-?	NR	5E-8				Affymetrix [NR] (imputed)	N
939	chr3	46484282	46484283	rs6441991	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDGFRL	5,367 Icelandic ancestry individuals	NA	3p21.31		rs6441991-A	0.08655	5E-32		0.397538	[0.33-0.46] unit increase	Illumina [7506463] (imputed)	N
939	chr3	46485368	46485369	rs7626288	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	3p21.31	LTF	rs7626288-A	0.44	2E-9		0.7962	[NR]	Illumina [4867007] (imputed)	N
939	chr3	46485772	46485773	rs72622926	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs72622926-C	0.192	1E-11	(Sperm acrosome membrane-associated protein 3, SPACA3.8076.4.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
939	chr3	46487774	46487775	rs4682816	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs4682816-G	0.452	5E-12	(Lactotransferrin, LTF.2795.23.3)	0.17	[0.11-0.23] unit decrease	Affymetrix [10572788] (imputed)	N
939	chr3	46489014	46489015	rs743659	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MYCT1	5,362 Icelandic ancestry individuals	NA	3p21.31		rs743659-G	0.3066	1E-46		0.276505	[0.24-0.31] unit increase	Illumina [7506463] (imputed)	N
939	chr3	46491984	46491985	rs61740470	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs61740470-T	0.011	4E-27	(Lactotransferrin, LTF.2780.35.2)	1.25	[1.01-1.49] unit decrease	Affymetrix [10572788] (imputed)	N
939	chr3	46491984	46491985	rs61740470	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs61740470-T	0.011	2E-26	(Lactotransferrin, LTF.2795.23.3)	1.23	[0.99-1.47] unit decrease	Affymetrix [10572788] (imputed)	N
939	chr3	46495232	46495233	rs6414426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPACA3	5,350 Icelandic ancestry individuals	NA	3p21.31		rs6414426-C	0.01954	6E-15		0.50916	[0.38-0.64] unit decrease	Illumina [7506463] (imputed)	N
939	chr3	46495232	46495233	rs6414426	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ALPL	5,366 Icelandic ancestry individuals	NA	3p21.31		rs6414426-C	0.01954	8E-13		0.494662	[0.36-0.63] unit increase	Illumina [7506463] (imputed)	N
939	chr3	46498864	46498865	rs11707471	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3p21.31	NR	rs11707471-?		3E-78	(LTF)	0.6176	[NR] unit increase	Illumina [NR]	N
939	chr3	46501212	46501213	rs1126478	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	LTF	rs1126478-C	0.298995	5E-26	(Alkaline phosphatase, tissue-nonspecific isozyme)	0.4979	[0.41-0.59] unit increase	Affymetrix [509946]	N
939	chr3	46501267	46501268	rs1126477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NME1	5,362 Icelandic ancestry individuals	NA	3p21.31		rs1126477-T	0.2279	1E-84		0.422795	[0.38-0.47] unit decrease	Illumina [7506463] (imputed)	N
939	chr3	46501267	46501268	rs1126477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LTF	5,367 Icelandic ancestry individuals	NA	3p21.31		rs1126477-T	0.2279	3E-126		0.517325	[0.47-0.56] unit decrease	Illumina [7506463] (imputed)	N
939	chr3	46501267	46501268	rs1126477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ASGR1	5,352 Icelandic ancestry individuals	NA	3p21.31		rs1126477-T	0.2279	2E-24		0.213574	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	7E-27	(TDGF1, 5810_25_3)	0.31718692	[0.26-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	7E-15	(ASGR1, 5452_71_3)	0.2297878	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	3E-466	(PDGFRL, 9713_67_3)	1.1813753	[1.14-1.22] unit decrease	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	3E-25	(MYCT1, 13541_1_3)	0.30234134	[0.25-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	1E-65	(LTF, 2780_35_2)	0.5053373	[0.45-0.56] unit increase	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs1126477-C	0.7809375	1E-49	(NME1, 5909_51_3)	0.43218753	[0.38-0.49] unit increase	Illumina [> 1000000] (imputed)	N
939	chr3	46501267	46501268	rs1126477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs1126477-T	0.239	2E-591	(Platelet-derived growth factor receptor-like protein, PDGFRL.9713.67.3)	1.12	[1.08-1.16] unit increase	Affymetrix [10572788] (imputed)	N
939	chr3	46501267	46501268	rs1126477	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs1126477-T	0.239	1E-61	(Myc target protein 1, MYCT1.13541.1.3)	0.46	[0.4-0.52] unit increase	Affymetrix [10572788] (imputed)	N
939	chr3	46501768	46501769	rs4683234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs4683234-G	0.315	4E-600	(Platelet-derived growth factor receptor-like protein, PDGFRL.9713.67.3)	1.04	[1-1.08] unit increase	Affymetrix [10572788] (imputed)	N
939	chr3	46505265	46505266	rs6441996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs6441996-C	0.238	2E-51	(Lactotransferrin, LTF.2780.35.2)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
939	chr3	46505265	46505266	rs6441996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	LTF	rs6441996-C	0.238	2E-30	(Nucleoside diphosphate kinase A, NME1.5909.51.3)	0.33	[0.27-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
939	chr3	46505314	46505315	rs36114837	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPLP2	5,361 Icelandic ancestry individuals	NA	3p21.31		rs36114837-C	0.08601	6E-24		0.324082	[0.26-0.39] unit increase	Illumina [7506463] (imputed)	N
939	chr3	46521297	46521298	rs6763280	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3p21.31	NR	rs6763280-?	NR	8E-6		0.037	[0.021-0.053] unit increase	Illumina [at least 560000] (imputed)	N
939	chr3	46521391	46521392	rs2139634	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	3p21.31	NR	rs2139634-?	NR	9E-35	(Alkaline phosphatase, tissue-nonspecific isozyme)			Illumina [514227]	N
939	chr3	46521391	46521392	rs2139634	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	3p21.31	NR	rs2139634-?	NR	5E-34	(Lactotransferrin)			Illumina [514227]	N
940	chr3	46559910	46559911	rs11720094	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs11720094-G		2E-11		0.1058	[0.075-0.137] SD units increase	NR [10700000] (imputed)	N
940	chr3	46565748	46565749	rs12639258	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p21.31	NR	rs12639258-G	NR	5E-6		0.09	[0.051-0.129] SD units increase	NR [10700000] (imputed)	N
940	chr3	46566728	46566729	rs6775724	33227023	Wang Y	2020-11-23	PLoS Genet	Genome-wide association study identifies 16 genomic regions associated with circulating cytokines at birth.	Monocyte chemoattractant protein-1 levels	8,318 European ancestry individuals	(see Ahola-Olli 2017)	3p21.31	NR	rs6775724-T	NR	2E-7		0.0246	[0.015-0.034] unit decrease	Illumina [~ 9000000] (imputed)	N
940	chr3	46566730	46566731	rs114127275	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs114127275-?	NR	1E-20	(CCL4)	0.536921	[0.42-0.65] unit increase	Illumina [11901634] (imputed)	N
940	chr3	46566730	46566731	rs114127275	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs114127275-T	NR	2E-93		0.4395	[0.4-0.48] SD units increase	NR [10700000] (imputed)	N
940	chr3	46576080	46576081	rs939421	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	LRRC2	rs939421-C	0.2625502	4E-13	(EA, Teratocarcinoma-derived growth factor 1)	0.3631	[0.27-0.46] unit decrease	Affymetrix [509946]	N
940	chr3	46576080	46576081	rs939421	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3p21.31	NR	rs939421-?		1E-9	(CCL4)	0.2064	[NR] unit increase	Illumina [NR]	N
940	chr3	46585021	46585022	rs112043140	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Coronary atherosclerosis (time to event)	19,079 British ancestry cases, 263,792 British ancestry controls	NA	3p21.31	LRRC2	rs112043140-?	NR	5E-8				NR [~ 24000000] (imputed)	N
940	chr3	46596132	46596132	rs34382739	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs34382739-TA	0.257	1E-112	(Teratocarcinoma-derived growth factor 1, TDGF1.5810.25.3)	0.63	[0.57-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr3	46599936	46599937	rs2280410	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	TDGF1	rs2280410-?	NR	3E-6	(TAG 56:8)	0.43471316	[0.25-0.62] unit decrease	Affymetrix [at least 2500000] (imputed)	N
940	chr3	46600519	46600520	rs6783573	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	3p21.31	NR	rs6783573-?	NR	1E-15	(Teratocarcinoma-derived growth factor 1)			Illumina [514227]	N
940	chr3	46617336	46617337	rs3806701	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	LRRC2, LRRC2-AS1, AC104304.1, TDGF1	rs3806701-A	0.2738215	4E-145	(Teratocarcinoma-derived growth factor 1)	1.106	[1.04-1.18] unit increase	Affymetrix [509946]	N
940	chr3	46617501	46617502	rs3806702	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3p21.31	NR	rs3806702-?	NR	2E-8	(Cripto)			Illumina [~ 4000000] (imputed)	N
940	chr3	46617501	46617502	rs3806702	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3p21.31	NR	rs3806702-?	NR	1E-13	(Cripto)	0.14	[0.1-0.18] unit increase	Illumina [4020654] (imputed)	N
940	chr3	46617718	46617719	rs6769392	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	TDGF1	rs6769392-A	0.248	5E-1296	(Teratocarcinoma-derived growth factor 1, TDGF1.5810.25.3)	1.32	[1.28-1.36] unit increase	Affymetrix [10572788] (imputed)	N
940	chr3	46635823	46635824	rs10514714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs10514714-?	NR	4E-11				NR [~ 8900000] (imputed)	N
940	chr3	46638507	46638509	rs533430670	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs533430670-A	0.894	4E-158	(Teratocarcinoma-derived growth factor 1, TDGF1.5810.25.3)	1.09	[1.01-1.17] unit decrease	Affymetrix [10572788] (imputed)	N
940	chr3	46642004	46642005	rs4682823	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs4682823-G	0.7134375	3E-905	(TDGF1, 5810_25_3)	1.3313205	[1.3-1.36] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr3	46642004	46642005	rs4682823	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs4682823-G	0.7134375	3E-27	(PDGFRL, 9713_67_3)	0.29743677	[0.24-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
940	chr3	46646027	46646028	rs7610301	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	TDGF1	rs7610301-A	0.2361809	6E-11	(EA, Teratocarcinoma-derived growth factor 1)	0.3454	[0.24-0.45] unit decrease	Affymetrix [509946]	N
940	chr3	46650992	46650993	rs2176862	24535457	Chouraki V	2014-02-18	Mol Psychiatry	A genome-wide association meta-analysis of plasma A? peptides concentrations in the elderly.	Plasma amyloid beta peptide concentrations (ABx-42)	3,528 European ancestry individuals	NA	3p21.31	LOC100132146	rs2176862-T	0.054	4E-6		0.15	[0.091-0.209] unit increase	Illumina [2316178] (imputed)	N
940	chr3	46650992	46650993	rs2176862	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	LRRC2	rs2176862-?	NR	5E-6	(TAG 58:10)	0.33932662	[0.19-0.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
940	chr3	46650992	46650993	rs2176862	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	LRRC2	rs2176862-?	NR	3E-6	(TAG 58:9)	0.346621	[0.2-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
941	chr3	46679830	46679831	rs142043796	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs142043796-G		8E-7		0.2414	[0.15-0.34] SD units increase	NR [10700000] (imputed)	N
941	chr3	46688561	46688562	rs7633770	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3p21.31	intergenic	rs7633770-A	0.4061	1E-8		0.0295	[0.019-0.04] unit increase	Affymetrix [at least 7947838] (imputed)	N
941	chr3	46736186	46736187	rs112579976	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs112579976-G	NR	3E-40		0.4271	[0.36-0.49] SD units increase	NR [10700000] (imputed)	N
941	chr3	46776251	46776252	rs74498795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	PRSS46	rs74498795-G	0.999	3E-7	(AA)	0.224	unit increase	Illumina [NR] (imputed)	N
941	chr3	46789834	46789835	rs55806728	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs55806728-?	NR	3E-9				NR [~ 8900000] (imputed)	N
942	chr3	46835249	46835250	rs7429588	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs7429588-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
942	chr3	46836071	46836072	rs148742710	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs148742710-?	NR	8E-17	(CCL4)	0.521895	[0.4-0.64] unit increase	Illumina [11901634] (imputed)	N
942	chr3	46861938	46861939	rs113134141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p21.31		rs113134141-G	NR	1E-9		0.0179	[0.012-0.024] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
942	chr3	46861938	46861939	rs113134141	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p21.31	PRSS50	rs113134141-A	0.8985	3E-10		0.1569	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
942	chr3	46866865	46866866	rs6796502	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p21.31		rs6796502-A	NR	7E-16		0.93	[0.91-0.95]	Affymetrix, Illumina [NR] (imputed)	N
942	chr3	46866865	46866866	rs6796502	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	intergenic	rs6796502-G	0.9	6E-15	(EA)	1.0869565	[1.05-1.12] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
942	chr3	46866865	46866866	rs6796502	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	3p21.31	intergenic	rs6796502-G	0.81	8E-7		1.0869565		Affymetrix, Illumina [~ 14000000] (imputed)	N
942	chr3	46866865	46866866	rs6796502	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	3p21.31	Intergenic	rs6796502-G	0.91	2E-8		1.0869565	[1.05-1.12]	Affymetrix, Illumina [~ 11600000] (imputed)	N
942	chr3	46880129	46880130	rs78629618	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs78629618-C		4E-6		0.1188	[0.068-0.17] SD units decrease	NR [10700000] (imputed)	N
942	chr3	46888197	46888198	rs56387622	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs56387622-C	0.1012	5E-19	(EA)	0.0942	[0.073-0.115] unit decrease	Illumina [~ 11800000] (imputed)	N
942	chr3	46889186	46889187	rs6787229	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs6787229-A	0.115667	3E-10				Affymetrix, Illumina [24332387] (imputed)	N
942	chr3	46892160	46892161	rs1077216	26631737	Teumer A	2015-12-02	Diabetes	Genome-wide Association Studies Identify Genetic Loci Associated With Albuminuria in Diabetes.	Microalbuminuria	up to 54,116 European ancestry cases	NA	3p21.31	MYL3, PRSS42, PTH1R, CCDC	rs1077216-T	0.07	5E-6		0.2	[0.11-0.29] unit increase	Affymetrix, Illumina [2191945] (imputed)	N
942	chr3	46894938	46894939	rs73065147	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	3p21.31	MYL3	rs73065147-T	NR	8E-12		0.0261	[0.019-0.034] unit decrease	Affymetrix, Illumina [8034757] (imputed)	N
942	chr3	46894938	46894939	rs73065147	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	3p21.31	MYL3	rs73065147-T	0.9306	2E-11		0.0264326	[0.019-0.034] unit decrease	Affymetrix, Illumina [8603712] (imputed)	N
942	chr3	46894938	46894939	rs73065147	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	3p21.31	MYL3	rs73065147-C	NR	1E-7		1.0707935	[1.05-1.10]	Affymetrix, Illumina [8326000] (imputed)	N
942	chr3	46895375	46895376	rs6768627	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	3p21.31	MYL3	rs6768627-T	0.069	8E-9	(EA)	0.023	[0.015-0.031] unit increase	NR [12082474] (imputed)	N
942	chr3	46895375	46895376	rs6768627	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	3p21.31	MYL3	rs6768627-T	0.069	2E-8		0.01852	[0.012-0.025] unit increase	Affymetrix [11709857] (imputed)	N
942	chr3	46896498	46896499	rs6772151	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.31	NR	rs6772151-A	0.2893	3E-6	(East Asian)	0.3541	[0.2-0.5] unit increase	Illumina [6200000] (imputed)	N
942	chr3	46896498	46896499	rs6772151	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.31	NR	rs6772151-A	0.2925	1E-8	(East Asian)	0.3047	[0.2-0.41] unit increase	Illumina [6200000] (imputed)	N
942	chr3	46896498	46896499	rs6772151	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.31	NR	rs6772151-A	0.2925	8E-9	(East Asian)	0.2785	[0.18-0.37] unit increase	Illumina [6200000] (imputed)	N
942	chr3	46897454	46897455	rs111289888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs111289888-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
942	chr3	46897454	46897455	rs111289888	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs111289888-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
942	chr3	46907917	46907918	rs76770574	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	Intergenic	rs76770574-T	0.998	1E-7	(AA)	0.237	unit increase	Illumina [NR] (imputed)	N
942	chr3	46909811	46909812	rs78595810	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.31	MYL3	rs78595810-G	0.986712	2E-10		0.0527925	[0.036-0.069] unit increase	Affymetrix [NR] (imputed)	N
942	chr3	46909811	46909812	rs78595810	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p21.31	MYL3	rs78595810-G	0.986694	7E-15		0.0666867	[0.05-0.083] unit increase	Affymetrix [NR] (imputed)	N
942	chr3	46910592	46910593	rs144261207	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	Intergenic	rs144261207-A	0.997	2E-6	(AA)	0.179	unit increase	Illumina [NR] (imputed)	N
943	chr3	46925538	46925539	rs11926707	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p21.31		rs11926707-C	NR	7E-12		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
943	chr3	46925538	46925539	rs11926707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	PTH1R	rs11926707-T	NR	9E-13		0.0208395	[0.015-0.027] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46925538	46925539	rs11926707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	PTH1R	rs11926707-T	NR	2E-12		0.0205721	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46925538	46925539	rs11926707	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p21.31	KIF9	rs11926707-C	0.6262	2E-8		1.27	[1.17-1.38]	Affymetrix, Illumina [~ 27000000] (imputed)	N
943	chr3	46925538	46925539	rs11926707	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3p21.31	PTH1R	rs11926707-T	0.374443928283118	2E-8		0.0463	[0.03-0.062] unit decrease	NR [5035015] (imputed)	N
943	chr3	46925538	46925539	rs11926707	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	MYL3	rs11926707-?	NR	2E-6	(glycocholate)	0.20068935	[0.12-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
943	chr3	46928729	46928729	rs547109252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p21.31	PTH1R, AC109583.1	rs547109252-GA	NR	2E-9		0.0485401	[0.033-0.064] unit increase	Affymetrix [321016] (imputed)	N
943	chr3	46931477	46931478	rs4683301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p21.31	PTH1R	rs4683301-A	NR	1E-10		0.0185428	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
943	chr3	46931477	46931478	rs4683301	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.31	PTHR1	rs4683301-T	0.5999490000000001	6E-8		1.02	[1.01-1.03]	Affymetrix [14661600] (imputed)	N
943	chr3	46932056	46932057	rs4539969	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs4539969-?	NR	6E-24				NR [~ 8900000] (imputed)	N
943	chr3	46934289	46934290	rs144645644	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs144645644-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
943	chr3	46935733	46935734	rs724448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs724448-C	NR	2E-10		0.0155	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
943	chr3	46935733	46935734	rs724448	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p21.31	NR	rs724448-C	NR	9E-13		0.0173	[0.013-0.022] unit increase	Affymetrix [9000000] (imputed)	N
943	chr3	46941115	46941116	rs2242116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	PTH1R	rs2242116-A	NR	1E-11		0.0196063	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46941115	46941116	rs2242116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	PTH1R	rs2242116-A	NR	3E-11		0.0192544	[0.014-0.025] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46941115	46941116	rs2242116	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3p21.31	PTH1R	rs2242116-A	0.386564	1E-8		0.01733	[0.011-0.023] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
943	chr3	46941115	46941116	rs2242116	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3p21.31	PTH1R	rs2242116-A	0.390574	1E-9		0.015275	[0.01-0.02] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
943	chr3	46941115	46941116	rs2242116	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	3p21.31	PTH1R	rs2242116-A	0.39	1E-8		0.0209	[0.014-0.028] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
943	chr3	46944273	46944274	rs1138518	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3p21.31		rs1138518-T	0.381	9E-18				Affymetrix [10369434] (imputed)	N
943	chr3	46947086	46947087	rs2168443	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3p21.31	PTH1R	rs2168443-T	0.380483	9E-7		0.015845	[0.0095-0.0222] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
943	chr3	46947086	46947087	rs2168443	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3p21.31	PTH1R	rs2168443-T	0.379229	4E-10		0.016595	[0.011-0.022] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
943	chr3	46949035	46949035	rs751048898	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p21.31	PTH1R	rs751048898-TTGTA	NR	2E-8		0.0175164	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
943	chr3	46949519	46949520	rs138662258	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs138662258-G	NR	3E-30		0.5178	[0.43-0.61] SD units decrease	NR [10700000] (imputed)	N
943	chr3	46951934	46951935	rs11719795	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p21.31	NR	rs11719795-?	NR	2E-7		0.0090456	[0.0056-0.0125] unit increase	Affymetrix [805426] (imputed)	N
943	chr3	46953720	46953721	rs13081778	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3p21.31		rs13081778-A	0.626	2E-54				Affymetrix [10369434] (imputed)	N
943	chr3	46953720	46953721	rs13081778	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p21.31		rs13081778-G	0.373967	7E-16		0.018719794	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
943	chr3	46953720	46953721	rs13081778	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p21.31	NR	rs13081778-A	0.624515	2E-12		0.0139316	[0.01-0.018] unit decrease	NR [NR]	N
943	chr3	46954613	46954614	rs79117855	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs79117855-?	NR	5E-15	(CCL4)	0.509344	[0.38-0.64] unit increase	Illumina [11901634] (imputed)	N
943	chr3	46960796	46960797	rs6442039	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FVC)	100,285 Chinese ancestry individuals	NA	3p21.31		rs6442039-C	0.52	2E-8		0.025	[0.0093-0.0407] L decrease	Affymetrix [NR] (imputed)	N
943	chr3	46977950	46977951	rs61509315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p21.31		rs61509315-T	0.165937	1E-16		0.0225783	[0.017-0.028] unit increase	Illumina [13479295] (imputed)	N
943	chr3	46977950	46977951	rs61509315	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p21.31	CCDC12	rs61509315-?	NR	2E-21		0.03670551	[0.029-0.044] unit increase	Illumina [27896057] (imputed)	N
943	chr3	46979012	46979013	rs4683294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p21.31	CCDC12	rs4683294-C	0.677232	8E-10		0.014837814	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
943	chr3	46979012	46979013	rs4683294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p21.31	CCDC12	rs4683294-C	0.67724	1E-10		0.015486342	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
943	chr3	46982736	46982737	rs4682844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	CCDC12	rs4682844-C	NR	2E-16		0.0236275	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46982736	46982737	rs4682844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	CCDC12	rs4682844-C	NR	7E-17		0.0238758	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
943	chr3	46982736	46982737	rs4682844	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	CCDC12	rs4682844-C	NR	3E-10		0.0182476	[0.013-0.024] unit decrease	Affymetrix [321169] (imputed)	N
943	chr3	46984502	46984503	rs189587938	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	3p21.31	NR	rs189587938-G	NR	2E-7		0.3374	[0.21-0.47] SD units decrease	NR [10700000] (imputed)	N
943	chr3	46986451	46986452	rs78580841	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p21.31	CCDC12	rs78580841-T	0.0694	3E-11		1.0433117		Affymetrix [11880941] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	95,717 East Asian ancestry individuals	NA	3p21.31		rs13092573-T	0.270527	4E-8		0.0272943	[0.018-0.037] unit increase	Illumina [13471431] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p21.31		rs13092573-C	0.65	2E-39				Affymetrix [10369434] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3p21.31		rs13092573-C	0.65	3E-28				Affymetrix [10369434] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	CCDC12	rs13092573-T	NR	1E-13		0.0219829	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	CCDC12	rs13092573-T	NR	1E-13		0.0219672	[0.016-0.028] unit increase	Affymetrix [319769] (imputed)	N
943	chr3	46988560	46988561	rs13092573	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p21.31	CCDC12	rs13092573-T	NR	2E-11		0.0205523	[0.015-0.027] unit decrease	Affymetrix [321788] (imputed)	N
943	chr3	46988560	46988561	rs13092573	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p21.31	NR	rs13092573-T	0.350568	3E-9		0.0155943	[0.01-0.021] unit increase	Affymetrix [16585745] (imputed)	N
943	chr3	46988560	46988561	rs13092573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.31		rs13092573-?	NR	6E-40				NR [~ 8900000] (imputed)	N
943	chr3	46988560	46988561	rs13092573	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p21.31	NR	rs13092573-T	0.3339	3E-13		0.0138	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
943	chr3	46991240	46991241	rs6774733	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3p21.31		rs6774733-G	0.421	1E-12				Affymetrix [10369434] (imputed)	N
943	chr3	46995241	46995242	rs10461018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p21.31	NR	rs10461018-T	0.419984	3E-19		0.0105786	[0.0081-0.013] unit increase	Affymetrix [16585854] (imputed)	N
943	chr3	46995241	46995242	rs10461018	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p21.31	NR	rs10461018-T	0.419984	1E-12		0.00998913	[0.0072-0.0128] unit increase	Affymetrix [16585866] (imputed)	N
943	chr3	47001989	47001990	rs7628747	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count	107,964 Japanese ancestry individuals	NA	3p21.31	CCDC12	rs7628747-?	NR	1E-9		0.02648	[0.018-0.035] unit increase novel	Illumina [6108953] (imputed)	N
943	chr3	47024494	47024495	rs11130112	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs11130112-T	0.56402	5E-10				Affymetrix, Illumina [24653286] (imputed)	N
943	chr3	47030229	47030230	rs61734084	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	NBEAL2	rs61734084-G	0.998	5E-6	(AA)	0.224	unit increase	Illumina [NR] (imputed)	N
943	chr3	47033936	47033937	rs13066214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	3p21.31		rs13066214-T	0.59346	6E-10		0.0215523	[0.015-0.028] unit increase	Illumina [13479091] (imputed)	N
943	chr3	47035734	47035735	rs749511	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3p21.31	NBEAL2	rs749511-T	0.594199	4E-27		0.00563954	[0.0046-0.0067] unit increase	Affymetrix [13995440] (imputed)	N
943	chr3	47046841	47046842	rs2305638	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p21.31		rs2305638-C	NR	2E-12		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
943	chr3	47048974	47048975	rs114496665	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	NBEAL2	rs114496665-C	0.999	2E-6	(AA)	0.246	unit increase	Illumina [NR] (imputed)	N
944	chr3	47061182	47061183	rs2290547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p21.31	SETD2	rs2290547-A	0.174943	1E-14		0.024277072	[0.018-0.03] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47061182	47061183	rs2290547	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3p21.31	SETD2	rs2290547-A	0.211	1E-8	(Trans-ethnic initial)	0.0297	[0.021-0.039] unit decrease (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
944	chr3	47061182	47061183	rs2290547	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.31	SETD2	rs2290547-A	0.2	4E-9		0.03	[NR] unit decrease	NR [NR] (imputed)	N
944	chr3	47061699	47061700	rs17784127	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs17784127-T	0.5887	7E-10	(MTAG)	0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
944	chr3	47063909	47063910	rs34850939	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3p21.31		rs34850939-G	0.651	2E-23				Affymetrix [10369434] (imputed)	N
944	chr3	47063909	47063910	rs34850939	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	3p21.31	SETD2	rs34850939-A	0.349518	2E-8		0.032981403	[0.021-0.044] unit increase	Affymetrix [7288503] (imputed)	N
944	chr3	47070973	47070973	rs543811905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3p21.31	SETD2	rs543811905-CA	0.1782	6E-20		0.04532362	[0.036-0.055] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47070973	47070973	rs543811905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p21.31	SETD2	rs543811905-CA	0.1786	6E-10		0.0304442	[0.021-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47070973	47070973	rs543811905	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p21.31	SETD2	rs543811905-CA	0.1786	2E-16		0.04058472	[0.031-0.05] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47076467	47076468	rs151074357	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p21.31	SETD2	rs151074357-C	0.999	3E-6	(AA)	0.24	unit increase	Illumina [NR] (imputed)	N
944	chr3	47087269	47087270	rs199527736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.31	SETD2	rs199527736-A	0.203655	1E-11		0.01941844	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087269	47087270	rs199527736	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p21.31	SETD2	rs199527736-A	0.203648	2E-9		0.017211335	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p21.31		rs13063578-A	NR	1E-11		0.0174	[0.012-0.022] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
944	chr3	47087836	47087837	rs13063578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p21.31		rs13063578-A	NR	6E-102		0.0519	[0.047-0.057] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
944	chr3	47087836	47087837	rs13063578	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p21.31		rs13063578-A	NR	7E-18		0.0202	[0.016-0.025] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p21.31	SETD2	rs13063578-A	0.400589	1E-29		0.025506562	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p21.31	SETD2	rs13063578-A	0.400649	4E-17		0.020501934	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p21.31	SETD2	rs13063578-A	0.40061	2E-21		0.023702715	[0.019-0.029] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p21.31	SETD2	rs13063578-A	0.400603	1E-116		0.051889572	[0.047-0.056] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p21.31	SETD2	rs13063578-A	0.400504	3E-17		0.019212529	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs13063578-A	0.401584	2E-48				Affymetrix, Illumina [24649327] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p21.31	NR	rs13063578-A	0.400794	1E-44		0.028985	[0.025-0.033] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs13063578-A	0.404048	2E-151				Affymetrix, Illumina [23472807] (imputed)	N
944	chr3	47087836	47087837	rs13063578	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p21.31	NR	rs13063578-A	0.40077	1E-142		0.0529	[0.049-0.057] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
944	chr3	47087836	47087837	rs13063578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3p21.31	SETD2	rs13063578-A	0.4018	3E-9		0.02122998	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47087836	47087837	rs13063578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3p21.31	SETD2	rs13063578-A	0.4018	3E-19		0.032872	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47087836	47087837	rs13063578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p21.31	SETD2	rs13063578-A	0.4016	1E-12		0.02587866	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47087836	47087837	rs13063578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3p21.31	SETD2	rs13063578-A	0.4017	3E-18		0.03160705	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47087836	47087837	rs13063578	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p21.31	SETD2	rs13063578-A	0.4018	3E-50		0.0547414	[0.048-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
944	chr3	47093205	47093206	rs113569731	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.31	SETD2	rs113569731-C	0.90585	3E-10		0.0151686	[0.01-0.02] unit decrease	Affymetrix [12370749]	N
944	chr3	47093205	47093206	rs113569731	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs113569731-?	NR	7E-12	(CCL4)	0.446389	[0.32-0.57] unit increase	Illumina [11901634] (imputed)	N
944	chr3	47096522	47096523	rs12485875	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p21.31	SETD2	rs12485875-T	0.174451	2E-14		0.022387998	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47097984	47097985	rs62246406	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p21.31	SETD2	rs62246406-A	0.1629	5E-10		0.0237	[0.016-0.031] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
944	chr3	47124760	47124761	rs35053471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p21.31		rs35053471-A	NR	5E-32		0.0239	[0.02-0.028] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
944	chr3	47125384	47125385	rs4082155	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3p21.31	SETD2	rs4082155-A	0.5563	9E-6		0.0158	[0.0089-0.0227] unit increase	Affymetrix, Illumina [at least 228985]	N
944	chr3	47125384	47125385	rs4082155	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3p21.31	SETD2	rs4082155-A	0.5588	5E-7		0.0128	[0.0079-0.0177] unit increase	Affymetrix, Illumina [at least 228985]	N
944	chr3	47125916	47125916	rs762450647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3p21.31	NR	rs762450647-CT	0.465703	7E-9		0.00684993	[0.0044-0.0093] unit increase	Affymetrix [16582621] (imputed)	N
944	chr3	47125916	47125916	rs762450647	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3p21.31	NR	rs762450647-CT	0.465703	6E-8		0.00691166	[0.0043-0.0095] unit increase	Affymetrix [16582614] (imputed)	N
944	chr3	47129902	47129903	rs12631730	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p21.31	NR	rs12631730-?	NR	2E-6		0.0083757	[0.0049-0.0118] unit increase	Affymetrix [805426] (imputed)	N
944	chr3	47153605	47153606	rs11319249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p21.31		rs11319249-C	NR	1E-20		0.0218	[0.017-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
944	chr3	47159936	47159937	rs111675602	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs111675602-C	NR	6E-18		0.2548	[0.2-0.31] SD units decrease	NR [10700000] (imputed)	N
944	chr3	47162885	47162886	rs76208147	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3p21.31	NR	rs76208147-?	NR	5E-6		0.05193771	[0.03-0.074] unit increase	Illumina [34656550] (imputed)	N
944	chr3	47166832	47166833	rs11308076	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p21.31	SETD2	rs11308076-T	0.59746	8E-11		0.014704056	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
944	chr3	47172406	47172407	rs62246443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs62246443-T	0.829793	1E-17				Affymetrix, Illumina [17210439] (imputed)	N
944	chr3	47172406	47172407	rs62246443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p21.31	NR	rs62246443-T	0.825468	1E-19		0.022737	[0.018-0.028] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
944	chr3	47175193	47175194	rs62246445	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p21.31	SETD2	rs62246445-A	0.174406	1E-13		0.021781022	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
944	chr3	47183765	47183766	rs4683318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p21.31		rs4683318-A	0.149742	2E-9		0.022774	[0.015-0.03] unit increase	Illumina [13479924] (imputed)	N
944	chr3	47184054	47184055	rs114151323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.31		rs114151323-?	NR	4E-10				NR [~ 8900000] (imputed)	N
944	chr3	47185649	47185650	rs62246446	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p21.31	SETD2	rs62246446-G	0.17418	2E-32		0.03805803	[0.032-0.044] unit increase	Affymetrix [93095623] (imputed)	N
945	chr3	47203782	47203783	rs6442061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs6442061-T	0.61808	7E-15				Affymetrix, Illumina [23114412] (imputed)	N
945	chr3	47203782	47203783	rs6442061	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p21.31	NR	rs6442061-T	0.596124	4E-17		0.0173	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
945	chr3	47211346	47211347	rs75271464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs75271464-G	0.0251365	2E-14				Affymetrix, Illumina [24588908] (imputed)	N
945	chr3	47211346	47211347	rs75271464	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p21.31	NR	rs75271464-G	0.026001	4E-16		0.047974	[0.036-0.06] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
945	chr3	47220340	47220341	rs12497115	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	3p21.31		rs12497115-T	0.18	3E-10		0.0786	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
945	chr3	47242922	47242923	rs75423501	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p21.31	KIF9	rs75423501-G	0.1007	8E-6		1.05	[1.03-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
945	chr3	47242922	47242923	rs75423501	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.31	NR	rs75423501-?	NR	3E-13	(CCL4)	0.503107	[0.37-0.64] unit increase	Illumina [11901634] (imputed)	N
945	chr3	47249075	47249075	rs57383920	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p21.31	KIF9-AS1	rs57383920-TA	0.189372	1E-12		0.021877743	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr3	47249075	47249075	rs57383920	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	3p21.31	KIF9-AS1	rs57383920-TA	0.1905	1E-17		0.03898093	[0.03-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
945	chr3	47251390	47251391	rs115141604	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal fluid AB1-42 levels	3,146 individuals	NA	3p21.31	KIF9-AS1	rs115141604-G	0.03	4E-6		0.055	[0.031-0.079] unit increase	Illumina [7358575] (imputed)	N
945	chr3	47251819	47251820	rs535620250	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p21.31		rs535620250-G	NR	5E-8		0.0253	[0.016-0.034] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
945	chr3	47262245	47262246	rs11920354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3p21.31	KIF9-AS1	rs11920354-A	0.3861	5E-9		0.02146789	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
945	chr3	47262245	47262246	rs11920354	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3p21.31	KIF9-AS1	rs11920354-A	0.3862	5E-9		0.02145963	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
945	chr3	47265877	47265877	rs55664914	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p21.31		rs55664914-AG	NR	1E-8		0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
945	chr3	47265877	47265877	rs55664914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	KIF9-AS1	rs55664914-AG	0.373591	3E-11		0.015908174	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr3	47265877	47265877	rs55664914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	KIF9-AS1	rs55664914-AG	0.373492	1E-10		0.015228394	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr3	47265877	47265877	rs55664914	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3p21.31	FLJ39534, KIF9-AS1	rs55664914-?	NR	5E-8		0.0151	[0.01-0.02] unit decrease	Affymetrix [5701386] (imputed)	N
945	chr3	47276967	47276968	rs2276854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p21.31	KIF9-AS1, KIF9	rs2276854-T	0.595527	1E-12		0.017654106	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
945	chr3	47282302	47282303	rs2276853	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	3p21.31	KIF9	rs2276853-A	0.59433962305319	2E-7		0.030591113	unit decrease	Illumina [265780]	N
945	chr3	47282302	47282303	rs2276853	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3p21.31	KIF9	rs2276853-A	0.5899	3E-7		0.0131	[0.0082-0.018] unit increase	Affymetrix, Illumina [at least 228985]	N
945	chr3	47282302	47282303	rs2276853	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	3p21.31	KIF9, PTPN23	rs2276853-A	0.588	5E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
945	chr3	47283354	47283355	rs9867461	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs9867461-T	0.0312	2E-6	(EA)	0.0964	[0.057-0.136] unit decrease	Illumina [~ 11800000] (imputed)	N
945	chr3	47290639	47290639	rs36111901	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3p21.31		rs36111901-ATT	NR	1E-12		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
945	chr3	47293999	47294000	rs11921117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	KIF9	rs11921117-C	NR	6E-12		0.020029	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
945	chr3	47293999	47294000	rs11921117	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs11921117-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
945	chr3	47296898	47296899	rs6768221	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs6768221-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
945	chr3	47296898	47296899	rs6768221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.31		rs6768221-?	NR	1E-13				NR [~ 8900000] (imputed)	N
945	chr3	47298233	47298234	rs13065991	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p21.31	SNORD13J	rs13065991-A	0.403422	2E-17		0.00197166	[0.0015-0.0024] unit decrease	Affymetrix [13995440] (imputed)	N
945	chr3	47305728	47305729	rs79062474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p21.31		rs79062474-T	NR	3E-12		0.0512	[0.037-0.066] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
945	chr3	47305728	47305729	rs79062474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p21.31	KIF9	rs79062474-T	0.02563	3E-13		0.052297376	[0.038-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
945	chr3	47305728	47305729	rs79062474	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs79062474-C	NR	2E-17		0.2364	[0.18-0.29] SD units decrease	NR [10700000] (imputed)	N
945	chr3	47314495	47314496	rs56273245	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs56273245-?	NR	5E-49				NR [~ 8900000] (imputed)	N
945	chr3	47315537	47315538	rs114688092	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	3p21.31	CCDC12, KIF9, KIF9-AS1, KLHL18, NBEAL2, NRADDP, SETD2	rs114688092-?	NR	2E-6				Illumina [9650000] (imputed)	N
946	chr3	47317664	47317665	rs1024036	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p21.31	NR	rs1024036-?	NR	1E-6				Affymetrix [NR]	N
946	chr3	47331135	47331136	rs11710322	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p21.31	NR	rs11710322-T	0.3991	1E-10				NR [9056863] (imputed)	N
946	chr3	47351500	47351501	rs11710121	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p21.31		rs11710121-G	0.35	8E-9		5.78	z score increase	Affymetrix [9061022] (imputed)	N
946	chr3	47388946	47388947	rs8180040	23350875	Fernandez-Rozadilla C	2013-01-26	BMC Genomics	A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.	Colorectal cancer	882 European ancestry cases, 473 European ancestry controls	1,436 European ancestry cases, 1,780 European ancestry controls	3p21.31	NR	rs8180040-?	NR	2E-6		1.28	[1.15-1.41]	Affymetrix [674718]	N
946	chr3	47405678	47405679	rs146331761	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs146331761-A	0.0367	5E-7	(EA)	0.0875	[0.053-0.122] unit decrease	Illumina [~ 11800000] (imputed)	N
946	chr3	47421298	47421299	rs75511849	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.31	NR	rs75511849-C	NR	3E-12		0.0236	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
946	chr3	47421298	47421299	rs75511849	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3p21.31	NR	rs75511849-C	NR	3E-11		0.0214	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
947	chr3	47452117	47452118	rs6780013	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	3p21.31	PTPN23	rs6780013-G	0.616	2E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
947	chr3	47459678	47459679	rs12487736	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	3p21.31	NR	rs12487736-C	0.49	1E-5				Illumina [4877242] (imputed)	N
947	chr3	47459678	47459679	rs12487736	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p21.31	NR	rs12487736-C	0.423758	4E-27		0.00866661	[0.007-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
947	chr3	47459678	47459679	rs12487736	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p21.31	NR	rs12487736-C	0.423758	2E-20		0.0083278	[0.0065-0.0102] unit increase	Affymetrix [16582965] (imputed)	N
947	chr3	47461463	47461464	rs77215549	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs77215549-C	NR	2E-24		0.2644	[0.21-0.32] SD units decrease	NR [10700000] (imputed)	N
947	chr3	47484952	47484953	rs4858894	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p21.31	SCAP	rs4858894-C	0.3754	3E-8		0.0115689	[0.0075-0.0156] unit decrease	Affymetrix [NR] (imputed)	N
947	chr3	47484952	47484953	rs4858894	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.31		rs4858894-?	NR	5E-9		0.0134182	[0.0091-0.0177] unit decrease	Affymetrix [20259828] (imputed)	N
947	chr3	47506229	47506230	rs77481436	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs77481436-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
947	chr3	47530594	47530595	rs112471280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.31		rs112471280-?	NR	8E-9				NR [~ 8900000] (imputed)	N
947	chr3	47534108	47534109	rs13098603	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3p21.31		rs13098603-A	NR	5E-9		0.0124	[0.0083-0.0165] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
947	chr3	47534920	47534921	rs13094615	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.31	C3orf75	rs13094615-T	0.409	6E-10		0.4073	[0.28-0.54] mmHg increase	Affymetrix [NR] (imputed)	N
947	chr3	47539968	47539969	rs13059519	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p21.31	NR	rs13059519-?	NR	2E-6		0.0084444	[0.005-0.0119] unit increase	Affymetrix [805426] (imputed)	N
947	chr3	47544002	47544003	rs17784882	24952745	Arking DE	2014-06-22	Nat Genet	Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.	QT interval	Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals	Up to 33,316 European ancestry individuals	3p21.31	C3ORF75	rs17784882-A	0.396	3E-8		0.54	[0.34-0.74] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
947	chr3	47561702	47561703	rs143283473	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs143283473-C	NR	2E-30		0.3606	[0.3-0.42] SD units decrease	NR [10700000] (imputed)	N
948	chr3	47582723	47582724	rs1564760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	AC099778.1	rs1564760-C	NR	2E-8		0.0171066	[0.011-0.023] unit decrease	Affymetrix [319769] (imputed)	N
948	chr3	47582723	47582724	rs1564760	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	AC099778.1	rs1564760-C	NR	6E-9		0.0176576	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
948	chr3	47588648	47588649	rs111499603	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.31	AK094639	rs111499603-T	0.2456	1E-11		0.2714	[0.19-0.35] mmHg decrease	Affymetrix [NR] (imputed)	N
948	chr3	47597244	47597245	rs143829871	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	3p21.31	NR	rs143829871-C		2E-6		0.1902	[0.11-0.27] SD units increase	NR [10700000] (imputed)	N
948	chr3	47606214	47606215	rs11716779	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p21.31	CSPG5	rs11716779-G		3E-8		1.022	[NR]	Affymetrix [up to 79000000] (imputed)	N
948	chr3	47606214	47606215	rs11716779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p21.31	NR	rs11716779-G	0.262	8E-14		0.00922538	[0.0068-0.0116] unit increase	NR [9732723] (imputed)	N
948	chr3	47618952	47618953	rs3732530	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3p21.31	CSPG5	rs3732530-C	0.34619999999999995	2E-8	(recessive model)	0.0151	[0.0098-0.0204] unit increase	Illumina [246328]	N
948	chr3	47641010	47641011	rs4858802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.31		rs4858802-?	NR	1E-11				NR [~ 8900000] (imputed)	N
948	chr3	47653821	47653822	rs62262084	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p21.31	SMARCC1	rs62262084-T	0.2551	7E-11		0.0699	[0.049-0.091] unit decrease	NR [9744772] (imputed)	N
948	chr3	47653821	47653822	rs62262084	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	SMARCC1	rs62262084-T	0.2529	9E-9		0.013385643	[0.0088-0.018] unit decrease	Affymetrix [up to 18485882] (imputed)	N
948	chr3	47653821	47653822	rs62262084	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs62262084-T	0.2487	2E-14	(conditional-joint)	0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
948	chr3	47666709	47666710	rs74801519	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	3p21.31	SMARCC1	rs74801519-A	0.097141	9E-7		0.401823	[0.24-0.56] unit increase	Affymetrix [9463307] (imputed)	N
948	chr3	47672914	47672915	rs17785248	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs17785248-A	0.7463	2E-6		32.003765	z score increase	NR [6814003]	N
948	chr3	47693663	47693664	rs62262091	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p21.31		rs62262091-T	NR	3E-9		0.0876	[0.059-0.117] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
948	chr3	47693663	47693664	rs62262091	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p21.31	NR	rs62262091-C	0.9106	1E-10		0.0557	[0.039-0.073] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
948	chr3	47693663	47693664	rs62262091	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p21.31	NR	rs62262091-C	0.9134	2E-10		0.0538	[0.037-0.07] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
949	chr3	47715544	47715545	rs79111787	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	3p21.31	NR	rs79111787-C	0.0322	1E-10		0.9076	[0.63-1.18] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
949	chr3	47715544	47715545	rs79111787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.31	NR	rs79111787-C	NR	1E-14		0.0817	[0.061-0.102] unit increase	Affymetrix [9000000] (imputed)	N
949	chr3	47715544	47715545	rs79111787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.31	NR	rs79111787-C	NR	2E-9		0.064	[0.043-0.085] unit decrease	Affymetrix [9000000] (imputed)	N
949	chr3	47715544	47715545	rs79111787	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.31	NR	rs79111787-C	NR	3E-12		0.0744	[0.054-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
949	chr3	47764054	47764055	rs142840709	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	3p21.31	SMARCC1	rs142840709-C	0.018	2E-7		2.72	[1.86-3.97]	Illumina [7206774] (imputed)	N
949	chr3	47769925	47769926	rs76060013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	SMARCC1	rs76060013-A	NR	6E-9		0.0235933	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
949	chr3	47769925	47769926	rs76060013	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	SMARCC1	rs76060013-A	NR	7E-9		0.0235478	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
949	chr3	47769925	47769926	rs76060013	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs76060013-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
949	chr3	47800215	47800216	rs13319205	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p21.31	NR	rs13319205-A	0.29	4E-9	(Conditioned on chr3:48731487, chr3:50192760)	0.016539797	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
949	chr3	47817006	47817007	rs72906474	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs72906474-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
950	chr3	47901802	47901803	rs7429990	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p21.31	MAP4	rs7429990-?	NR	3E-9		0.01354075	[0.0091-0.018] unit decrease	NR [7306098]	N
950	chr3	47901802	47901803	rs7429990	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs7429990-A	0.2693	8E-9		0.014693202	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
950	chr3	47905078	47905079	rs1665982	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs1665982-A	0.2705	3E-7		36.200638	z score increase	NR [6814003]	N
950	chr3	47914973	47914974	rs7638388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p21.31		rs7638388-T	NR	4E-11		0.0254	[0.018-0.033] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
950	chr3	47927483	47927484	rs319690	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p21.31	MAP4	rs319690-C	0.297	2E-6	(EA, initial)	0.368	[0.22-0.52] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
950	chr3	47927483	47927484	rs319690	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3p21.31	MAP4	rs319690-C	0.297	9E-7	(EA, initial)	0.233	[0.14-0.33] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
950	chr3	47927483	47927484	rs319690	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	MAP4	rs319690-T		1E-12		0.291	unit increase	Affymetrix [at least 2696785] (imputed)	N
950	chr3	47927483	47927484	rs319690	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	MAP4	rs319690-T		1E-16		0.208	unit increase	Affymetrix [at least 2696785] (imputed)	N
950	chr3	47927483	47927484	rs319690	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3p21.31	MAP4	rs319690-T	0.51	3E-8	(Mean Arterial Pressure)	0.297	[0.20-0.40] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
950	chr3	47935008	47935009	rs75485436	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs75485436-G	NR	1E-33		0.3426	[0.29-0.4] SD units decrease	NR [10700000] (imputed)	N
950	chr3	47948474	47948475	rs13072917	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p21.31	MAP4	rs13072917-A	0.0811354	1E-12		0.00298776	[0.0021-0.0038] unit decrease	Affymetrix [13995440] (imputed)	N
950	chr3	47958036	47958037	rs1060407	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	3p21.31	MAP4, ZNF589	rs1060407-T	0.27888184993325	1E-6		0.25045192	[0.15-0.35] unit decrease	Illumina [247039]	N
951	chr3	47981734	47981735	rs62260762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs62260762-T	NR	1E-9		0.0286	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
951	chr3	47981734	47981735	rs62260762	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs62260762-T	NR	3E-12		0.0343	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs62260764-C	0.255	2E-11	(MTAG)	0.0137	[0.0096-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs62260764-C	0.2548	4E-21	(MTAG)	0.0178	[0.014-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p21.31	Intergenic	rs62260764-G	0.7452	6E-15		0.0203	[0.015-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs62260764-C	0.2559	3E-16		0.0132	[0.01-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs62260764-C	0.2559	8E-21	(MTAG)	0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
951	chr3	47990499	47990500	rs62260764	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs62260764-C	0.2617	1E-8	(MTAG)	0.0148	[0.0097-0.0199] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
951	chr3	47995269	47995270	rs112427907	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	3p21.31	NR	rs112427907-G		3E-6		0.1836	[0.11-0.26] SD units decrease	NR [10700000] (imputed)	N
951	chr3	48011328	48011329	rs188643386	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p21.31	MAP4	rs188643386-A	0.0121282901062109	2E-6	(G_Coprococcus_HB)	1.36526	[0.8-1.93] unit decrease	Illumina [7711310] (imputed)	N
951	chr3	48021281	48021282	rs34170328	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NR	rs34170328-?	NR	4E-6		4.613	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
951	chr3	48065827	48065828	rs145407011	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs145407011-T	0.0268	1E-6	(EA)	0.0978	[0.059-0.137] unit decrease	Illumina [~ 11800000] (imputed)	N
951	chr3	48068265	48068267	rs199779881	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs199779881-TTC	NR	3E-30		0.3626	[0.3-0.42] SD units decrease	NR [10700000] (imputed)	N
951	chr3	48068609	48068610	rs62260788	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs62260788-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
951	chr3	48077700	48077701	rs4392441	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and systole blood pressure (pairwise)	472,402 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3p21.31	MAP4	rs4392441-T	0.6849	1E-8				Affymetrix, Illumina [2331072] (imputed)	N
951	chr3	48092334	48092335	rs35979968	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.31	MAP4	rs35979968-T	0.256	3E-16		0.3319	[0.25-0.41] mmHg decrease	Affymetrix [NR] (imputed)	N
952	chr3	48108441	48108442	rs6771917	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3p21.31	MAP4	rs6771917-T	0.240852	1E-8		0.053709045	[0.035-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
952	chr3	48130892	48130893	rs6442101	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p21.31	MAP4	rs6442101-T	0.692	2E-10		0.396	[0.27-0.52] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
952	chr3	48130892	48130893	rs6442101	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p21.31	MAP4	rs6442101-T	0.692	2E-15		0.303	[0.23-0.38] mm Hg increase	Affymetrix, Illumina, Perlegen [128272]	N
952	chr3	48137241	48137242	rs143928419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs143928419-A	0.0539	2E-11	(MTAG)	0.0265	[0.019-0.034] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
952	chr3	48137241	48137242	rs143928419	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p21.31	Intergenic	rs143928419-G	0.9461	4E-8		0.0237	[0.015-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
952	chr3	48165088	48165089	rs73072330	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell growth factor beta levels	3,682 Finnish ancestry individuals	NA	3p21.31	NR	rs73072330-G		4E-6		0.18	[0.1-0.26] SD units decrease	NR [10700000] (imputed)	N
952	chr3	48170801	48170802	rs2034963	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p21.31	CDC25A	rs2034963-G	0.35132	7E-14		0.0110872	[0.0082-0.014] unit increase	Affymetrix [12370749]	N
952	chr3	48171452	48171453	rs75354213	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs75354213-?	NR	6E-26				NR [~ 8900000] (imputed)	N
952	chr3	48174209	48174210	rs6800730	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p21.31	CDC25A	rs6800730-A	0.332275	3E-13		0.04665812	[0.034-0.059] unit decrease	Affymetrix [7288503] (imputed)	N
952	chr3	48174209	48174210	rs6800730	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p21.31		rs6800730-?	NR	1E-15				NR [~ 8900000] (imputed)	N
952	chr3	48175410	48175411	rs34687996	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls, 20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	3p21.31		rs34687996-A	NR	1E-8		0.0498	[0.033-0.067] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
952	chr3	48178028	48178029	rs12494304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p21.31		rs12494304-?	NR	4E-23				NR [~ 8900000] (imputed)	N
952	chr3	48178292	48178293	rs12494396	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	3p21.31	CDC25A	rs12494396-G	0.334855	6E-9		0.050804816	[0.034-0.068] unit decrease	Affymetrix [7288503] (imputed)	N
952	chr3	48179177	48179178	rs12495221	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3p21.31	intergenic	rs12495221-T	0.656	2E-7		0.035	[0.021-0.049] unit increase	Affymetrix [7947838] (imputed)	N
952	chr3	48179875	48179876	rs138096147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs138096147-A	0.0323	2E-8		0.0234	[0.015-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
952	chr3	48179875	48179876	rs138096147	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs138096147-A	0.0323	1E-10	(MTAG)	0.0247	[0.017-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
952	chr3	48182325	48182326	rs6442105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	3p21.31		rs6442105-G	NR	5E-8		0.0456	[0.029-0.062] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
952	chr3	48182325	48182326	rs6442105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p21.31		rs6442105-G	NR	3E-13		0.0465	[0.034-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
952	chr3	48182325	48182326	rs6442105	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	3p21.31	CDC25A	rs6442105-A	0.332355	5E-8		0.04558892	[0.029-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
952	chr3	48189896	48189896	rs36047718	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p21.31		rs36047718-TAA	NR	2E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
952	chr3	48193514	48193515	rs7617773	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3p21.31	CDC25A	rs7617773-T	0.6693	3E-11		0.0355	[0.025-0.046] unit increase	Affymetrix [at least 7947838] (imputed)	N
952	chr3	48193514	48193515	rs7617773	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3p21.31	CDC25A	rs7617773-T	0.6703	2E-11		0.0393	[0.028-0.051] unit increase	NR [8041861] (imputed)	N
952	chr3	48193752	48193753	rs2100692	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.31	CDC25A	rs2100692-G	0.904028	6E-9		0.0189922	[0.013-0.025] unit decrease	Affymetrix [NR] (imputed)	N
952	chr3	48193752	48193753	rs2100692	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs2100692-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
952	chr3	48194645	48194646	rs116033001	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	CDC25A	rs116033001-A	0.04759	2E-8		0.025355833	[0.016-0.034] unit increase	Affymetrix [up to 18485882] (imputed)	N
952	chr3	48197613	48197614	rs6797587	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p21.31	MAP4, CDC25A	rs6797587-A		5E-7		0.289	unit decrease	Affymetrix [at least 2696785] (imputed)	N
952	chr3	48197613	48197614	rs6797587	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	MAP4, CDC25A	rs6797587-A		3E-16		0.331	unit decrease	Affymetrix [at least 2696785] (imputed)	N
952	chr3	48197613	48197614	rs6797587	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	MAP4, CDC25A	rs6797587-A		3E-6		0.126	unit decrease	Affymetrix [at least 2696785] (imputed)	N
952	chr3	48197613	48197614	rs6797587	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p21.31	MAP4, CDC25A	rs6797587-A		5E-6		0.17	unit decrease	Affymetrix [at least 2696785] (imputed)	N
952	chr3	48197613	48197614	rs6797587	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	MAP4, CDC25A	rs6797587-A		4E-17		0.208	unit decrease	Affymetrix [at least 2696785] (imputed)	N
952	chr3	48205624	48205625	rs41290676	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	3p21.31	CDC25A	rs41290676-?	NR	4E-6	(EA)			Illumina [7205781] (imputed)	N
952	chr3	48210679	48210680	rs73831556	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	3p21.31	NR	rs73831556-?	NR	1E-6		3.9373	[1.49-6.38] unit decrease	Illumina [at least 560000] (imputed)	N
952	chr3	48213497	48213498	rs3731529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	CDC25A	rs3731529-T	NR	3E-11		0.0230387	[0.016-0.03] unit decrease	Affymetrix [321114] (imputed)	N
952	chr3	48213497	48213498	rs3731529	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	CDC25A	rs3731529-T	NR	4E-10		0.0217108	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
952	chr3	48229365	48229366	rs146179438	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	3p21.31	NR	rs146179438-A	NR	3E-20		0.06564388	[0.052-0.08] unit decrease	Illumina [242289]	N
952	chr3	48229365	48229366	rs146179438	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	3p21.31	NR	rs146179438-A	0.024	5E-12		0.067	unit decrease	Illumina [242289]	N
952	chr3	48229365	48229366	rs146179438	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs146179438-C	NR	8E-28		0.2963	[0.24-0.35] SD units decrease	NR [10700000] (imputed)	N
952	chr3	48234491	48234492	rs9844505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	MIR4443	rs9844505-G	NR	8E-11		0.0238658	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
952	chr3	48234491	48234492	rs9844505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	MIR4443	rs9844505-G	NR	2E-11		0.0246826	[0.017-0.032] unit decrease	Affymetrix [319769] (imputed)	N
953	chr3	48235957	48235958	rs75281979	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs75281979-?		2E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48236794	48236795	rs138708216	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs138708216-?		2E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48258321	48258322	rs114356151	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs114356151-?		2E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48260303	48260304	rs62263023	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p21.31	NR	rs62263023-A	0.09148699999999999	7E-11		0.0281185	[0.019-0.037] unit increase	Affymetrix [16585745] (imputed)	N
953	chr3	48265968	48265969	rs7645101	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs7645101-?		2E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48273630	48273631	rs7645493	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs7645493-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48273630	48273631	rs7645493	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs7645493-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48276970	48276971	rs7618694	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs7618694-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48277904	48277905	rs79901854	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs79901854-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48278079	48278080	rs74358307	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs74358307-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48279937	48279938	rs6789249	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs6789249-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48282694	48282695	rs9847953	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3p21.31	CDC25A	rs9847953-A	0.716	6E-8		0.0198	unit increase	Illumina [242296]	N
953	chr3	48286166	48286167	rs76227692	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs76227692-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48286913	48286914	rs75899098	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs75899098-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48292077	48292078	rs138424282	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs138424282-?		3E-6	(African)			Illumina [~ 5190000] (imputed)	N
953	chr3	48316033	48316034	rs6442112	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		CDC25A, ZNF589, RNU7-128P, NDUFB1P1, CAMP	rs6442112-A	0.3427419	5E-14	(EA, Hepatocyte growth factor-like protein)	0.3507	[0.26-0.44] unit increase	Affymetrix [509946]	N
953	chr3	48333445	48333446	rs7614532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p21.31		rs7614532-A	0.129325	8E-12		0.0279344	[0.02-0.036] unit decrease	Illumina [13479924] (imputed)	N
953	chr3	48352578	48352578	rs71281886	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs71281886-CAA	0.0232	2E-6	(EA)	0.1168	[0.069-0.165] unit decrease	Illumina [~ 11800000] (imputed)	N
953	chr3	48357599	48357600	rs74735576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.31	NR	rs74735576-A	NR	2E-17		0.0853	[0.066-0.105] unit increase	Affymetrix [9000000] (imputed)	N
953	chr3	48357599	48357600	rs74735576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.31	NR	rs74735576-A	NR	1E-11		0.0685	[0.049-0.088] unit decrease	Affymetrix [9000000] (imputed)	N
953	chr3	48357599	48357600	rs74735576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.31	NR	rs74735576-A	NR	2E-15		0.0797	[0.06-0.099] unit decrease	Affymetrix [9000000] (imputed)	N
953	chr3	48357599	48357600	rs74735576	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.31	SPINK8	rs74735576-G	0.984308	7E-16		0.0618713	[0.047-0.077] unit increase	Affymetrix [NR] (imputed)	N
953	chr3	48357599	48357600	rs74735576	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs74735576-G	NR	3E-27		0.2926	[0.24-0.35] SD units decrease	NR [10700000] (imputed)	N
954	chr3	48370423	48370424	rs62263033	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs62263033-T	0.964	6E-9		0.03652165	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
954	chr3	48382281	48382282	rs2017858	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs2017858-G	0.6059375	2E-21	(MST1, 4407_10_1)	0.24597463	[0.2-0.3] unit increase	Illumina [> 1000000] (imputed)	N
954	chr3	48382281	48382282	rs2017858	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs2017858-G	0.6059375	1E-18	(TXNDC12, 4815_25_3)	0.22735146	[0.18-0.28] unit increase	Illumina [> 1000000] (imputed)	N
954	chr3	48382485	48382486	rs7640677	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs7640677-?		3E-7	(African)			Illumina [~ 5190000] (imputed)	N
954	chr3	48383892	48383893	rs139231591	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs139231591-?		3E-7	(African)			Illumina [~ 5190000] (imputed)	N
954	chr3	48387228	48387229	rs75158213	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	3p21.31	NR	rs75158213-?		3E-7	(African)			Illumina [~ 5190000] (imputed)	N
954	chr3	48388169	48388170	rs115854006	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	3p21.31	TREX1, PLXNB1	rs115854006-?	NR	5E-8				NR [NR]	N
954	chr3	48388169	48388170	rs115854006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.31		rs115854006-?	NR	9E-11				NR [~ 8900000] (imputed)	N
954	chr3	48388169	48388170	rs115854006	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	3p21.31	NR	rs115854006-C	0.96	5E-8		0.006	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
954	chr3	48414273	48414274	rs17080138	28641744	Guo W	2017-07-01	Eur Neuropsychopharmacol	Polygenic risk score and heritability estimates reveals a genetic relationship between ASD and OCD.	Obsessive-compulsive disorder or autism spectrum disorder	2,998 European ancestry obsessive-compulsive disorder cases, 6,898 European ancestry autism spectrum disorder cases	NA	3p21.31	intergenic	rs17080138-T	NR	7E-6		22.0	[12.41-31.59] unit increase	Illumina [6995140] (imputed)	N
954	chr3	48428471	48428472	rs73831575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs73831575-A	0.9408	8E-12	(MTAG)	0.0259	[0.018-0.033] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
954	chr3	48428471	48428472	rs73831575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs73831575-A	0.9406	4E-18	(MTAG)	0.0305	[0.024-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
954	chr3	48428471	48428472	rs73831575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p21.31	Intergenic	rs73831575-A	0.9406	2E-9		0.0286	[0.019-0.038] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
954	chr3	48428471	48428472	rs73831575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs73831575-A	0.9403	3E-11	(MTAG)	0.0323	[0.023-0.042] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
954	chr3	48443815	48443816	rs7651407	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p21.31	PLXNB1	rs7651407-T	0.4445	3E-13		0.0025	[0.0017-0.0033] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
954	chr3	48443815	48443816	rs7651407	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p21.31	PLXNB1	rs7651407-T	0.4544	1E-13		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
954	chr3	48468797	48468798	rs149130226	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p21.31		rs149130226-C	NR	6E-12		0.0423	[0.03-0.054] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
954	chr3	48468797	48468798	rs149130226	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p21.31	NR	rs149130226-C	0.040396	6E-12		0.033573	[0.024-0.043] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
954	chr3	48469440	48469441	rs140711597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs140711597-C	0.9818	2E-11		0.0366	[0.026-0.047] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
954	chr3	48469440	48469441	rs140711597	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs140711597-C	0.9812	2E-8		0.05150889	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
954	chr3	48477251	48477252	rs146948889	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs146948889-G	NR	5E-22		0.2944	[0.23-0.35] SD units decrease	NR [10700000] (imputed)	N
954	chr3	48478087	48478088	rs4858819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p21.31	CCDC51	rs4858819-T	0.264189	1E-13		0.018924216	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
954	chr3	48487047	48487048	rs730566	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	RP11-24C3.2	rs730566-A	NR	2E-13		0.0234497	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
954	chr3	48487047	48487048	rs730566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p21.31	NR	rs730566-A	NR	4E-9		0.016	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
954	chr3	48487047	48487048	rs730566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3p21.31	NR	rs730566-A	NR	4E-9		0.016	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
954	chr3	48487047	48487048	rs730566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs730566-A	NR	4E-10		0.0174	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
954	chr3	48487047	48487048	rs730566	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	3p21.31	NR	rs730566-?	NR	7E-6		1.27	[NR]	Illumina [NR] (imputed)	N
954	chr3	48487337	48487338	rs9876781	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	3p21.31	RP11-24C3.2	rs9876781-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
955	chr3	48507574	48507575	rs3135940	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p21.31	TREX1	rs3135940-A	0.045	6E-6	(IGFBP-3 )	0.03	[NR] ng/mL increase	Illumina [899892]	N
955	chr3	48517348	48517349	rs114582462	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p21.31		rs114582462-?	NR	2E-10				NR [~ 8900000] (imputed)	N
955	chr3	48525954	48525955	rs6442126	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	SHISA5	rs6442126-T	NR	4E-8		0.0165145	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
955	chr3	48525954	48525955	rs6442126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs6442126-A	0.6593	5E-16		0.0121	[0.0092-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
955	chr3	48525954	48525955	rs6442126	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs6442126-A	0.6593	2E-18	(MTAG)	0.0122	[0.0095-0.0149] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
955	chr3	48532672	48532673	rs62264271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	SHISA5	rs62264271-T	NR	1E-17		0.028438	[0.022-0.035] unit decrease	Affymetrix [321114] (imputed)	N
955	chr3	48532672	48532673	rs62264271	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	SHISA5	rs62264271-T	NR	4E-14		0.0251862	[0.019-0.032] unit decrease	Affymetrix [321169] (imputed)	N
955	chr3	48550195	48550196	rs62261464	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	3p21.31	PFKFB4	rs62261464-A	0.0341	8E-6		0.0202	[0.011-0.029] unit increase	Affymetrix [~ 7740000] (imputed)	N
955	chr3	48556338	48556339	rs2267846	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	PFKFB4	rs2267846-A	NR	2E-14		0.0243593	[0.018-0.031] unit decrease	Affymetrix [319769] (imputed)	N
955	chr3	48556338	48556339	rs2267846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs2267846-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
955	chr3	48556338	48556339	rs2267846	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs2267846-?	NR	7E-24				Affymetrix [~ 8270000] (imputed)	N
955	chr3	48556338	48556339	rs2267846	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	3p21.31	NR	rs2267846-A	0.29	1E-22		0.0189	[0.015-0.023] unit decrease	NR [~ 27400000] (imputed)	N
955	chr3	48569707	48569708	rs142876825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs142876825-C	0.977899	5E-10				Affymetrix, Illumina [17210439] (imputed)	N
955	chr3	48569707	48569708	rs142876825	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p21.31	NR	rs142876825-C	0.97713	4E-12		0.045951	[0.033-0.059] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
955	chr3	48570685	48570686	rs11710798	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs11710798-C		3E-6		0.0924	[0.054-0.131] SD units decrease	NR [10700000] (imputed)	N
955	chr3	48578052	48578053	rs191903670	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs191903670-?	NR	2E-9				NR [~ 8900000] (imputed)	N
955	chr3	48578052	48578053	rs191903670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs191903670-A	0.9792	2E-10	(MTAG)	0.0374	[0.026-0.049] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
955	chr3	48578052	48578053	rs191903670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs191903670-A	0.9836	4E-8		0.0335	[0.022-0.045] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
955	chr3	48579408	48579409	rs73078304	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs73078304-A	0.875	3E-8		41.0413	z score increase	NR [6814003]	N
955	chr3	48579761	48579762	rs13079292	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs13079292-G	0.9798	8E-6	(EA)	0.1064	[0.06-0.153] unit increase	Illumina [~ 11800000] (imputed)	N
955	chr3	48581512	48581513	rs9917656	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs9917656-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
955	chr3	48581512	48581513	rs9917656	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	3p21.31	PFKFB4	rs9917656-C	0.3	3E-8		0.0066081	[0.0043-0.0089] unit increase	NR [16367095] (imputed)	N
955	chr3	48584812	48584813	rs73078305	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs73078305-C	0.117296	4E-9		0.057363678	[0.038-0.076] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
955	chr3	48586194	48586195	rs62261468	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs62261468-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
955	chr3	48586194	48586195	rs62261468	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	PFKFB4	rs62261468-T	0.0715	5E-14		1.0547		Affymetrix [11880941] (imputed)	N
955	chr3	48601773	48601774	rs74780677	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	3p21.31		rs74780677-A	0.984778	2E-8		0.0952439	[0.062-0.129] unit increase	NR [11722792] (imputed)	N
955	chr3	48601773	48601774	rs74780677	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p21.31		rs74780677-G	NR	3E-20		0.093	[0.073-0.113] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
955	chr3	48601773	48601774	rs74780677	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	COL7A1	rs74780677-G	0.016	1E-12	(Procollagen galactosyltransferase 1, COLGALT1.5638.23.3)	0.7	[0.5-0.9] unit increase	Affymetrix [10572788] (imputed)	N
955	chr3	48609040	48609041	rs76061303	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs76061303-C	NR	1E-18		0.276	[0.21-0.34] SD units decrease	NR [10700000] (imputed)	N
955	chr3	48624610	48624611	rs2255532	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	UQCRC1	rs2255532-?	NR	8E-7	(glycocholate)	0.22362113	[0.13-0.31] unit increase	Affymetrix [at least 2500000] (imputed)	N
955	chr3	48624610	48624611	rs2255532	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	UQCRC1	rs2255532-?	NR	6E-6	(glycodeoxycholate)	0.20687822	[0.12-0.3] unit increase	Affymetrix [at least 2500000] (imputed)	N
955	chr3	48625265	48625266	rs1264194	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p21.31	COL7A1	rs1264194-C	0.711754	5E-9		0.0254099	[0.017-0.034] unit increase	Affymetrix [641018] (imputed)	N
956	chr3	48628013	48628014	rs2228561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs2228561-A	NR	8E-12		0.0233	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
956	chr3	48628013	48628014	rs2228561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs2228561-A	NR	4E-13		0.0259	[0.019-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr3	48632755	48632756	rs115744844	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p21.31	COL7A1	rs115744844-A	0.983992	3E-20		0.0767464	[0.06-0.093] unit increase	Affymetrix [NR] (imputed)	N
956	chr3	48638800	48638801	rs62618742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p21.31	UQCRC1	rs62618742-T	0.031402	9E-21		0.062023956	[0.049-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr3	48638800	48638801	rs62618742	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p21.31	UQCRC1	rs62618742-T	0.031398	1E-11		0.045165908	[0.032-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
956	chr3	48649456	48649457	rs1264191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	UQCRC1	rs1264191-T	NR	5E-10		0.0232281	[0.016-0.031] unit decrease	Affymetrix [319769] (imputed)	N
956	chr3	48649456	48649457	rs1264191	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	UQCRC1	rs1264191-T	NR	1E-10		0.0241418	[0.017-0.031] unit decrease	Affymetrix [319769] (imputed)	N
956	chr3	48649456	48649457	rs1264191	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs1264191-T	0.185	7E-9	(MTAG)	0.0133	[0.0088-0.0178] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr3	48652754	48652755	rs555591583	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.31		rs555591583-?	NR	9E-14		0.120552	[0.088-0.153] unit decrease	Affymetrix [20259828] (imputed)	N
956	chr3	48654937	48654938	rs6792156	28580392	Taylor KC	2016-08-27	Bone Rep	A genome-wide association study meta-analysis of clinical fracture in 10,012 African American women.	Bone fracture in osteoporosis	up to 10,305 African American women	NA	3p21.31	COL7A1	rs6792156-C	0.46	9E-6		1.34	[1.17-1.53] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
956	chr3	48658466	48658467	rs3895736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs3895736-A	0.1728	1E-14		0.0144	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
956	chr3	48658466	48658467	rs3895736	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs3895736-A	0.1728	8E-16	(MTAG)	0.014	[0.011-0.017] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
956	chr3	48661984	48661985	rs13063312	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	IP6K2, NCKIPSD, CELSR3, TMEM89, MIR6824, MIR4793, CELSR3-AS1, RP11-572O6.1, AC141002.1, SLC26A6	rs13063312-A	0.1048144	4E-30	(EA, Hepatocyte growth factor-like protein)	0.7897	[0.66-0.92] unit decrease	Affymetrix [509946]	N
956	chr3	48668169	48668170	rs114135552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs114135552-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
956	chr3	48675855	48675856	rs13096357	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs13096357-A	NR	5E-8		5.469	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
956	chr3	48675855	48675856	rs13096357	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p21.31	CELSR3	rs13096357-?	NR	3E-9		5.913	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
956	chr3	48681052	48681053	rs9868809	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs9868809-A	0.1036	3E-13	(EA)	1.1570203	[1.12-1.2]	Affymetrix, Illumina [~ 9000000] (imputed)	N
956	chr3	48681052	48681053	rs9868809	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs9868809-A	0.1036	8E-18	(EA)	1.14707	[1.12-1.18]	Affymetrix, Illumina [~ 9000000] (imputed)	N
956	chr3	48681052	48681053	rs9868809	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs9868809-A	0.1036	1E-9	(EA)	1.1240871	[1.09-1.16]	Affymetrix, Illumina [~ 9000000] (imputed)	N
956	chr3	48682657	48682658	rs34638686	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs34638686-T	0.1009	2E-9		0.022911318	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
956	chr3	48694980	48694981	rs11706153	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs11706153-T	NR	2E-9		0.0488	[0.033-0.065] unit decrease	Affymetrix [9000000] (imputed)	N
956	chr3	48695833	48695834	rs73078357	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.31	CELSR3	rs73078357-C	NR	1E-11		0.0321581	[0.023-0.041] unit increase	Affymetrix [321114] (imputed)	N
956	chr3	48695833	48695834	rs73078357	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	3p21.31	NR	rs73078357-T	0.879398	2E-9		1.008	[1.006, 1.011]	Affymetrix [39302896] (imputed)	N
956	chr3	48695833	48695834	rs73078357	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	3p21.31	CELSR3	rs73078357-C	0.12	4E-8		0.0090208	[0.0058-0.0123] unit increase	NR [16367095] (imputed)	N
956	chr3	48708346	48708347	rs73078367	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3p21.31	NCKIPSD	rs73078367-C	0.889069	5E-11		1.08	[1.06-1.11]	NR [8126035] (imputed)	N
956	chr3	48708346	48708347	rs73078367	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs73078367-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
956	chr3	48708346	48708347	rs73078367	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs73078367-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
956	chr3	48708346	48708347	rs73078367	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs73078367-T	NR	2E-9		6.014	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
956	chr3	48708346	48708347	rs73078367	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	NCKIPSD	rs73078367-T	NR	9E-12		0.032737307	[0.023-0.042] unit increase	Affymetrix [NR]	N
956	chr3	48708346	48708347	rs73078367	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p21.31	NR	rs73078367-C		8E-6		0.0833	[0.047-0.12] SD units increase	NR [10700000] (imputed)	N
956	chr3	48710738	48710739	rs75654367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs75654367-T	0.078	4E-17	(MTAG)	0.0262	[0.02-0.032] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr3	48710738	48710739	rs75654367	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs75654367-T	0.0814	3E-14	(MTAG)	0.0322	[0.024-0.04] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
956	chr3	48712366	48712367	rs9873726	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	3p21.31		rs9873726-?	NR	2E-13		0.0183	NR unit decrease	NR [5460735] (imputed)	N
956	chr3	48718252	48718253	rs9821797	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	3p21.31	NCKIPSD	rs9821797-A	0.12	7E-15		1.17	[1.13-1.21]	Affymetrix, Illumina [at least 8111819] (imputed)	N
956	chr3	48721039	48721040	rs990211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	NCKIPSD	rs990211-A	NR	5E-19		0.0323129	[0.025-0.039] unit decrease	Affymetrix [321114] (imputed)	N
956	chr3	48721039	48721040	rs990211	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	NCKIPSD	rs990211-A	NR	2E-14		0.027818	[0.021-0.035] unit decrease	Affymetrix [321169] (imputed)	N
956	chr3	48721039	48721040	rs990211	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.31		rs990211-?	NR	2E-9				NR [~ 8900000] (imputed)	N
956	chr3	48723301	48723302	rs6792510	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	3p21.31	NR	rs6792510-C	0.754992	1E-8		0.0126	[0.0083-0.0169] unit decrease	Affymetrix [23037915] (imputed)	N
956	chr3	48723458	48723459	rs188551769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.31	NCKIPSD	rs188551769-T	NR	1E-8		0.0368253	[0.024-0.049] unit increase	Affymetrix [127266] (imputed)	N
956	chr3	48731449	48731450	rs76398786	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	IP6K2	rs76398786-C		2E-8		0.382	unit decrease	Affymetrix [at least 2696785] (imputed)	N
956	chr3	48731486	48731487	rs3172494	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs3172494-T	0.1157	2E-11		56.44458	z score increase	NR [6814003]	N
956	chr3	48731486	48731487	rs3172494	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p21.31	IP6K2	rs3172494-T	0.1161	9E-19		0.1341	[0.1-0.16] unit increase	NR [9744772] (imputed)	N
956	chr3	48731486	48731487	rs3172494	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	IP6K2	rs3172494-T	NR	1E-8		0.0263808	[0.017-0.035] unit increase	Affymetrix [321114] (imputed)	N
956	chr3	48731486	48731487	rs3172494	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Acceptance of an invitation to participate in a mental health questionnaire	146,074 European ancestry cases, 148,713 European ancestry controls	NA	3p21.31	NR	rs3172494-G	0.89	9E-9		0.96	[0.95, 0.97]	Affymetrix [39302896] (imputed)	N
956	chr3	48731486	48731487	rs3172494	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	IP6K2	rs3172494-T	0.1023	6E-13		0.023215912	[0.017-0.03] unit increase	Affymetrix [up to 18485882] (imputed)	N
956	chr3	48731486	48731487	rs3172494	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p21.31	NR	rs3172494-T	0.115	1E-16		0.0140486	[0.011-0.017] unit decrease	NR [9732723] (imputed)	N
956	chr3	48731486	48731487	rs3172494	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p21.31	NR	rs3172494-T	0.115	3E-13	(Conditioned on chr3:50192760)	0.029126683	[0.021-0.037] unit decrease	NR [~ 10000000] (imputed)	N
956	chr3	48731486	48731487	rs3172494	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs3172494-T	0.1168	9E-11		0.023141198	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
956	chr3	48731960	48731961	rs72929172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p21.31		rs72929172-?	NR	9E-10				NR [~ 8900000] (imputed)	N
956	chr3	48734470	48734471	rs6763557	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3p21.31		rs6763557-T	NR	7E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
956	chr3	48734860	48734861	rs80026423	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs80026423-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
956	chr3	48735705	48735706	rs11719291	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p21.31	IP6K2	rs11719291-?	NR	3E-6		0.04	[0.023-0.057] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
956	chr3	48736215	48736216	rs28657585	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	IP6K2	rs28657585-A	NR	9E-9		5.757	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
956	chr3	48748988	48748989	rs12497850	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3p21.31	IP6K2	rs12497850-T	0.6476	1E-10		0.0636	[0.044-0.083] unit increase	NR [7784415] (imputed)	N
956	chr3	48748988	48748989	rs12497850	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	3p21.31	NCKIPSD, CDC71	rs12497850-T	0.653	9E-9		1.0752687	[1.04-1.1]	Illumina [11933700] (imputed)	N
956	chr3	48751819	48751820	rs6786055	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p21.31	NR	rs6786055-G	0.370695	1E-17		0.0178545	[0.014-0.022] unit decrease	NR [NR]	N
956	chr3	48751927	48751928	rs148532090	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Mental disorder (without autoimmune disease)	42,866 Danish ancestry cases, 19,790 Danish ancestry controls	NA	3p21.31	NR	rs148532090-?	NR	1E-6				NR [7721839] (imputed)	N
956	chr3	48753148	48753149	rs9848203	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs9848203-C	0.102	3E-139	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	0.98	[0.9-1.06] unit increase	Affymetrix [10572788] (imputed)	N
957	chr3	48765167	48765168	rs56735597	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs56735597-A	0.119284	2E-10		0.06154062	[0.043-0.081] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
957	chr3	48766110	48766111	rs73080339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.31	IP6K2	rs73080339-G	NR	3E-12		0.0443132	[0.032-0.057] unit increase	Affymetrix [321114] (imputed)	N
957	chr3	48766110	48766111	rs73080339	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	IP6K2	rs73080339-G	0.06257	4E-9		0.024337977	[0.016-0.032] unit increase	Affymetrix [up to 18485882] (imputed)	N
957	chr3	48766110	48766111	rs73080339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs73080339-?	NR	4E-39				NR [~ 8900000] (imputed)	N
957	chr3	48767876	48767877	rs6808104	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.31	IP6K2	rs6808104-G	NR	8E-9		0.0178678	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
957	chr3	48767876	48767877	rs6808104	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p21.31	IP6K2	rs6808104-G	0.498281	1E-13		0.016903609	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
957	chr3	48767876	48767877	rs6808104	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p21.31	IP6K2	rs6808104-A	0.534	7E-9		0.0158	[0.011-0.021] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
957	chr3	48768585	48768586	rs62261476	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs62261476-C	NR	1E-17		0.1943	[0.15-0.24] SD units decrease	NR [10700000] (imputed)	N
957	chr3	48768679	48768680	rs6799186	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p21.31	CDC25A, ZNF589, NME6, SPINK8, FBXW12, PLXNB1, CCDC51, TMA7, ATRIP, TREX1, SHISA5, PFKFB4, UCN2, COL7A1, UQCRC1, TMEM89, SLC26A6, CELSR3, NCKIPSD, IP6K2, PRKAR2A, SLC25A20, ARIH2OS, ARIH2, P4HTM, WDR6, DALRD3, NDUFAF3, IMPDH2, QRICH1, QARS, USP19, LAMB2, CCDC71, KLHDC8B, C3orf84, CCDC36, RP11-3B7.1, C3orf62, USP4, GPX1, RHOA, TCTA, AMT, NICN1, DAG1, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, TRAIP, CAMKV, MST1R, CTD-2330K9.3, MON1A, RBM6, RBM5, SEMA3F, GNAT1, GNAI2, LSMEM2, IFRD2, HYAL2, TUSC2, RASSF1, ZMYND10, NPRL2, CYB561D2, XXcos-LUCA11.5, TMEM115, CACNA2D2, CISH, MAPKAPK3, DOCK3	rs6799186-?		2E-13				NR [7428630] (imputed)	N
957	chr3	48769854	48769855	rs56411893	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p21.31		rs56411893-A	0.8413	2E-12		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
957	chr3	48769854	48769855	rs56411893	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	IP6K2, PRKAR2A	rs56411893-G	0.15859999999999996	6E-17		1.0441684		Affymetrix [11880941] (imputed)	N
957	chr3	48770731	48770732	rs11715835	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	IP6K2, CELSR3, NCKIPSD, ARIH2, WDR6, KLHDC8B, CCDC36, USP19, PRKAR2A, P4HTM, DALRD3, IMPDH2, QARS, CCDC71, QRICH1, AC141002.1, PRKAR2A-AS1, SLC25A20, ARIH2OS, RP13-131K19.1, RP13-131K19.2, RP13-131K19.6, NDUFAF3, RN7SL182P, MIR6890, LAMB2, RP11-694I15.7, C3orf84	rs11715835-T	0.09688755	2E-40	(Thioredoxin domain-containing protein 12)	0.9432	[0.81-1.08] unit increase	Affymetrix [509946]	N
957	chr3	48778026	48778027	rs6442130	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p21.31		rs6442130-A	0.33	4E-22		9.66	z score increase	Affymetrix [9061022] (imputed)	N
957	chr3	48778026	48778027	rs6442130	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p21.31	NR	rs6442130-A	0.3408	1E-17				NR [9056863] (imputed)	N
957	chr3	48778918	48778919	rs115562858	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		3p21.31	IP6K2, PRKAR2A	rs115562858-G	NR	5E-9		0.039192	[0.023-0.056] nmol/l increase	NR [19000000] (imputed)	N
957	chr3	48779420	48779421	rs62261477	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.31	IP6K2	rs62261477-G	0.917922	7E-14		0.0187472	[0.014-0.024] unit decrease	Affymetrix [12370749]	N
957	chr3	48780080	48780081	rs7630742	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p21.31	NR	rs7630742-A	0.3426	1E-17				NR [9056863] (imputed)	N
957	chr3	48800734	48800735	rs140154767	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PRKAR2A	rs140154767-?	NR	1E-8		1.4745	[NR] unit decrease	Affymetrix [NR] (imputed)	N
957	chr3	48801839	48801840	rs3774628	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p21.31		rs3774628-C	0.34	7E-30		11.35	z score increase	Affymetrix [9061022] (imputed)	N
957	chr3	48808530	48808531	rs7429596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	PRKAR2A	rs7429596-T	NR	2E-15		0.0264386	[0.02-0.033] unit decrease	Affymetrix [319769] (imputed)	N
957	chr3	48808530	48808531	rs7429596	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	PRKAR2A	rs7429596-T	NR	2E-16		0.0273208	[0.021-0.034] unit decrease	Affymetrix [319769] (imputed)	N
957	chr3	48817137	48817138	rs62261502	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p21.31	PRKAR2A	rs62261502-G	0.926716	3E-37		0.0470703	[0.04-0.054] unit decrease	NR [13737936] (imputed)	N
957	chr3	48824936	48824937	rs137997194	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (depressed mood) (ordinal trait)	148,752 European ancestry individuals	NA	3p21.31	PRKAR2A	rs137997194-A	0.955	4E-10		0.032	[0.022-0.042] unit decrease	NR [9413637] (imputed)	N
957	chr3	48824936	48824937	rs137997194	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (depressed mood) (binary trait)	32,263 European ancestry cases, 116,489 European ancestry controls	NA	3p21.31	KLHDC8B, PRKAR2A, AMT	rs137997194-A	0.9555	8E-10		0.023	[0.015-0.031] unit decrease	NR [9413637] (imputed)	N
957	chr3	48837731	48837732	rs13094900	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NR	rs13094900-?	NR	5E-8		5.441	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
957	chr3	48867048	48867050	rs56027700	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p21.31	PRKAR2A	rs56027700-?	NR	1E-7		0.021510761	[0.014-0.029] unit decrease	Illumina [27896057] (imputed)	N
957	chr3	48884146	48884147	rs9311434	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p21.31		rs9311434-T	0.34	8E-29		11.14	z score increase	Affymetrix [9061022] (imputed)	N
958	chr3	48893779	48893780	rs9840684	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3p21.31	KCNK2	rs9840684-?		3E-11				NR [7428630] (imputed)	N
958	chr3	48901369	48901370	rs62259531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p21.31		rs62259531-?	NR	5E-29				NR [~ 8900000] (imputed)	N
958	chr3	48908247	48908248	rs559788767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	SLC25A20	rs559788767-A	0.591468	3E-16		0.021801582	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr3	48908247	48908248	rs559788767	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	SLC25A20	rs559788767-A	0.591479	2E-13		0.01933118	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr3	48912496	48912496	rs535612879	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	SLC25A20	rs535612879-GA	0.515607	1E-16		0.020487217	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
958	chr3	48918007	48918008	rs562825263	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.31	SLC25A20	rs562825263-C	0.582948	1E-14		0.018440628	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
958	chr3	48935582	48935583	rs7431710	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	3p21.31	NR	rs7431710-A	0.654	1E-12		0.018289817	[0.013-0.023] unit decrease	NR [~ 10000000] (imputed)	N
958	chr3	48938761	48938762	rs11712982	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs11712982-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
958	chr3	48941550	48941551	rs7432782	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NR	rs7432782-C	0.0442	7E-9		1.0869565	[1.06-1.11]	Affymetrix, Illumina [NR] (imputed)	N
958	chr3	48956256	48956257	rs150858838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p21.31	ARIH2OS	rs150858838-G	0.034266	9E-12		0.04284343	[0.031-0.055] unit increase	Affymetrix [93095623] (imputed)	N
958	chr3	48961018	48961019	rs62262463	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC12	5,356 Icelandic ancestry individuals	NA	3p21.31		rs62262463-G	0.07664	4E-33		0.411645	[0.34-0.48] unit increase	Illumina [7506463] (imputed)	N
958	chr3	48961018	48961019	rs62262463	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs62262463-G	NR	9E-17		0.1936	[0.15-0.24] SD units increase	NR [10700000] (imputed)	N
958	chr3	48964298	48964299	rs114001974	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ARIH2	rs114001974-?	NR	8E-10		2.3081	[NR] unit decrease	Affymetrix [NR] (imputed)	N
958	chr3	48965077	48965078	rs34221642	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs34221642-A	0.0407555	3E-8		0.09808036	[0.063-0.133] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
958	chr3	48966271	48966272	rs9852448	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	SLC25A20	rs9852448-?	NR	7E-6	(LPE 18:0)	0.6953018	[0.39-1] unit decrease	Affymetrix [at least 2500000] (imputed)	N
958	chr3	48978621	48978622	rs11353326	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p21.31	ARIH2	rs11353326-C	0.6376	2E-10		0.0260616	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
958	chr3	48979631	48979632	rs114970491	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs114970491-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
958	chr3	48981023	48981024	rs73082325	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs73082325-C	0.9701	1E-8		0.0252	[0.017-0.034] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
958	chr3	48982334	48982335	rs55786114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs55786114-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
958	chr3	48982334	48982335	rs55786114	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p21.31	Intergenic	rs55786114-C	0.9272	1E-11		0.0297	[0.021-0.038] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
958	chr3	48982334	48982335	rs55786114	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs55786114-T	0.0727	4E-11		0.029664775	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
958	chr3	48989643	48989644	rs62262466	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	ARIH2	rs62262466-A	0.0794	1E-16		1.0555		Affymetrix [11880941] (imputed)	N
958	chr3	48992581	48992582	rs7636057	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3p21.31	NR	rs7636057-T	0.657	3E-17		0.0194149	[0.015-0.024] unit decrease	NR [9732723] (imputed)	N
958	chr3	49009569	49009570	rs73082337	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs73082337-C	0.8862	4E-9		45.165413	z score increase	NR [6814003]	N
958	chr3	49019962	49019963	rs188956527	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p21.31	ARIH2, RP13-131K19.1	rs188956527-T	0.0018	2E-6		0.6471	[0.38-0.91] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
959	chr3	49034878	49034879	rs6446204	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p21.31	NR	rs6446204-C	0.75	9E-23		0.02	[0.016-0.024] unit increase	Affymetrix [2446094] (imputed)	N
959	chr3	49034878	49034879	rs6446204	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p21.31	NR	rs6446204-C	0.75	5E-8				Affymetrix [2446094] (imputed)	N
959	chr3	49045354	49045355	rs13316620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs13316620-C	0.704785	2E-31				Affymetrix, Illumina [19872809] (imputed)	N
959	chr3	49045354	49045355	rs13316620	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p21.31	NR	rs13316620-C	0.658556	1E-33		0.026654	[0.022-0.031] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
959	chr3	49054691	49054692	rs3087866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3p21.31	NR	rs3087866-C	NR	2E-9		0.017	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
959	chr3	49054691	49054692	rs3087866	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs3087866-C	NR	2E-21		0.0277	[0.022-0.033] unit increase	Affymetrix [9000000] (imputed)	N
959	chr3	49054691	49054692	rs3087866	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	3p21.31	DALRD3	rs3087866-C	0.785885912015235	5E-7		0.035	unit decrease	Illumina [265780]	N
959	chr3	49064109	49064110	rs11706052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs11706052-G	NR	3E-17		0.0335	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
959	chr3	49064109	49064110	rs11706052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs11706052-G	NR	4E-13		0.028	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
959	chr3	49064109	49064110	rs11706052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs11706052-G	NR	2E-13		0.0285	[0.021-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
959	chr3	49064575	49064576	rs72624911	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs72624911-T	0.0475	6E-17		0.0282	[0.022-0.035] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
959	chr3	49069790	49069790	rs777897791	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		QRICH1	rs777897791-?	NR	1E-8		1.8522	[NR] unit decrease	Affymetrix [NR] (imputed)	N
959	chr3	49083565	49083566	rs73082357	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	3p21.31	QARS, LAMB2, BSN, AMIGO3, CCDC36, GPX1, RHOA, NICN1, DAG1, NDUFAF3	rs73082357-?	NR	4E-11		0.0117235	[0.0082-0.0152] unit increase	Affymetrix [NR] (imputed)	N
959	chr3	49083695	49083695	rs11374545	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs11374545-TA	0.288	3E-81	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
959	chr3	49089063	49089064	rs114353727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	QRICH1	rs114353727-G	NR	3E-8		0.0392182	[0.025-0.053] unit increase	Affymetrix [321114] (imputed)	N
959	chr3	49089063	49089064	rs114353727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p21.31	NR	rs114353727-G	0.041957	1E-10		0.030066	[0.021-0.039] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
959	chr3	49109918	49109919	rs11130181	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs11130181-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
959	chr3	49130377	49130378	rs73082363	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3p21.31	QRICH1	rs73082363-T	NR	4E-8		0.0095769	[0.0062-0.013] unit decrease	Affymetrix [18485882] (imputed)	N
959	chr3	49130377	49130378	rs73082363	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3p21.31	MIR6890, QARS, QRICH1	rs73082363-T	0.89	6E-9		0.061	[0.039-0.083] unit increase	Affymetrix [7947838] (imputed)	N
959	chr3	49131873	49131874	rs77440492	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs77440492-C	NR	7E-15		0.2419	[0.18-0.3] SD units decrease	NR [10700000] (imputed)	N
959	chr3	49132553	49132554	rs11718982	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs11718982-C	0.111332	1E-10		0.064409815	[0.045-0.084] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	9E-6	(males)	0.01688	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	3E-15	(females)	0.0245	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	1E-18		0.021	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	8E-6	(males)	0.01626	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	1E-14		0.01793	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49137903	49137904	rs4521268	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	ARIH2, C3orf60, C3orf71, DALRD3, IMPDH2, PH-4, QARS, QRICH1, WDR6	rs4521268-G	0.325548	1E-10	(females)	0.01938	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
959	chr3	49138809	49138810	rs11539148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs11539148-C	NR	3E-17		0.0406	[0.031-0.05] unit increase	Affymetrix [9000000] (imputed)	N
959	chr3	49138809	49138810	rs11539148	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs11539148-C	NR	7E-16		0.0407	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
959	chr3	49138809	49138810	rs11539148	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	QARS	rs11539148-C	0.0665	4E-17		1.0623606		Affymetrix [11880941] (imputed)	N
959	chr3	49143437	49143438	rs4955426	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3p21.31		rs4955426-C	0.222	4E-21		0.12	[0.1-0.15] % increase	Affymetrix [NR] (imputed)	N
959	chr3	49145303	49145304	rs4955411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p21.31		rs4955411-G	NR	9E-24		0.0286	[0.023-0.034] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
959	chr3	49145303	49145304	rs4955411	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	3p21.31	USP19	rs4955411-G		1E-10		0.965	[NR]	Affymetrix [up to 79000000] (imputed)	N
960	chr3	49161659	49161660	rs34290943	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3p21.31	LAMB2	rs34290943-T	0.893367	8E-10		1.08	[1.05-1.10]	NR [8126035] (imputed)	N
960	chr3	49162283	49162284	rs34759087	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs34759087-T	0.1119	1E-9		47.77462	z score increase	NR [6814003]	N
960	chr3	49162283	49162284	rs34759087	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	3p21.31	NR	rs34759087-G		7E-6				Illumina [458865]	N
960	chr3	49162283	49162284	rs34759087	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	3p21.31	IP6K2	rs34759087-T	0.117824	4E-9		5.91	z score decrease	NR [10847151] (imputed)	N
960	chr3	49166068	49166069	rs9865051	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p21.31	LAMB2	rs9865051-T	0.78	4E-10		0.49	[0.33-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
960	chr3	49166068	49166069	rs9865051	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs9865051-?	NR	2E-26				Affymetrix [~ 8270000] (imputed)	N
960	chr3	49166459	49166460	rs61729152	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p21.31	NR	rs61729152-T	0.0203	6E-6	(EA)	0.1081	[0.061-0.155] unit decrease	Illumina [~ 11800000] (imputed)	N
960	chr3	49173196	49173197	rs62262521	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	LAMB2	rs62262521-T	NR	1E-10		0.036716	[0.026-0.048] unit decrease	Affymetrix [321114] (imputed)	N
960	chr3	49193968	49193969	rs149534615	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs149534615-?	NR	7E-15				Affymetrix [~ 8270000] (imputed)	N
960	chr3	49200136	49200137	rs1134043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	CCDC71	rs1134043-T	NR	9E-9		0.0222708	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
960	chr3	49200136	49200137	rs1134043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	CCDC71	rs1134043-T	NR	5E-12		0.0269737	[0.019-0.035] unit increase	Affymetrix [321114] (imputed)	N
960	chr3	49200136	49200137	rs1134043	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	CCDC71	rs1134043-T	NR	4E-8		0.0215601	[0.014-0.029] unit increase	Affymetrix [321169] (imputed)	N
960	chr3	49202781	49202782	rs4499638	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3p21.31	NR	rs4499638-C	0.370376	2E-9		6.0	z score increase	NR [~ 10847151] (imputed)	N
960	chr3	49206317	49206318	rs6790914	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	3p21.31	CCDC71	rs6790914-G	NR	3E-7		1.2072	NR	Illumina [up to 1244428] (imputed)	N
960	chr3	49206919	49206920	rs543158428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	KLHDC8B	rs543158428-CA	NR	2E-8		0.0196961	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
960	chr3	49210731	49210732	rs7617480	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	3p21.31		rs7617480-?	NR	9E-15		0.0269	unit increase	NR [NR]	N
960	chr3	49210731	49210732	rs7617480	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation	up to 547,219 European ancestry individuals	NA	3p21.31	NR	rs7617480-C	0.773	2E-12		0.03287084	[0.024-0.042] unit decrease	NR [~ 10000000] (imputed)	N
960	chr3	49210731	49210732	rs7617480	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	3p21.31	NR	rs7617480-C	0.7706	9E-9		0.0128	[0.0085-0.0171] unit increase	Illumina [NR] (imputed)	N
960	chr3	49210731	49210732	rs7617480	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3p21.31	KLHDC8B	rs7617480-A	0.22	3E-8		2.4	[1.62-3.18] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
960	chr3	49211988	49211989	rs10865954	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.31	KLHDC8B	rs10865954-T	0.333944	2E-9		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
960	chr3	49211988	49211989	rs10865954	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.31	KLHDC8B	rs10865954-T	0.333944	5E-9		1.02	[1.01-1.04]	Affymetrix [14661600] (imputed)	N
960	chr3	49211988	49211989	rs10865954	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NR	rs10865954-T	0.3344	2E-11		1.043	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
960	chr3	49211988	49211989	rs10865954	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NA	rs10865954-T	0.3326	4E-9	(Female)	1.047	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
960	chr3	49213029	49213030	rs11713297	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NR	rs11713297-?	NR	5E-8		5.45	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
960	chr3	49213636	49213637	rs9586	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	3p21.31	NR	rs9586-T		2E-10		0.0313868	[0.022-0.041] unit decrease	NR [6694342]	N
960	chr3	49213636	49213637	rs9586	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p21.31	NR	rs9586-?	NR	4E-9		0.01634	[0.011-0.022] unit increase	Affymetrix [10847151] (imputed)	N
960	chr3	49213636	49213637	rs9586	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	3p21.31	TMA7	rs9586-T	0.219964	2E-8		5.65	z score decrease	NR [10847151] (imputed)	N
960	chr3	49214065	49214066	rs13084037	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	3p21.31	NR	rs13084037-G	0.226	2E-17		1.0214505	[1.02-1.03]	NR [8098588] (imputed)	N
960	chr3	49228500	49228501	rs4541435	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs4541435-A	0.01341	9E-6	(EA)	1.2494621	[1.15-1.35]	Affymetrix, Illumina [~ 9000000] (imputed)	N
960	chr3	49238717	49238718	rs13091206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p21.31	CCDC36	rs13091206-G	0.7785	1E-11		0.02874472	[0.02-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
960	chr3	49238717	49238718	rs13091206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p21.31	CCDC36	rs13091206-G	0.7785	8E-12		0.02915616	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
960	chr3	49244656	49244657	rs6769821	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.31	NR	rs6769821-A	0.738632457857146	2E-10		0.008440527	[0.0059-0.011] unit decrease	NR [NR]	N
960	chr3	49244656	49244657	rs6769821	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.31	NR	rs6769821-A	0.738632457857146	3E-10		0.009017135	[0.0062-0.0118] unit decrease	NR [NR]	N
960	chr3	49250006	49250007	rs113011189	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs113011189-C	0.0795229	2E-8		0.07248526	[0.047-0.098] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
960	chr3	49250006	49250007	rs113011189	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs113011189-T	0.0855	3E-8		0.024694242	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
960	chr3	49255171	49255172	rs2082923	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p21.31	NR	rs2082923-C	0.735591404889129	1E-10		0.006986368	[0.0049-0.0091] unit decrease	NR [NR]	N
960	chr3	49263637	49263638	rs202238847	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p21.31	CCDC36	rs202238847-CT	0.9787	3E-6		0.1091	[0.063-0.155] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
960	chr3	49267434	49267435	rs140195698	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.31		rs140195698-?	NR	3E-12				NR [~ 8900000] (imputed)	N
960	chr3	49274825	49274826	rs13064780	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	3p21.31	CCDC36	rs13064780-G	0.623	2E-6		0.0072	[0.0043-0.0101] unit increase	Affymetrix [~ 7740000] (imputed)	N
960	chr3	49280205	49280206	rs114953223	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC12	5,356 Icelandic ancestry individuals	NA	3p21.31		rs114953223-G	0.03916	3E-14		0.360028	[0.27-0.45] unit increase	Illumina [7506463] (imputed)	N
961	chr3	49296233	49296234	rs150252215	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs150252215-A	0.0437	4E-9		0.0204	[0.014-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
961	chr3	49298204	49298205	rs4955417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p21.31	NR	rs4955417-C	0.73668659950621	5E-11		0.0068413885	[0.0048-0.0089] unit decrease	NR [NR]	N
961	chr3	49298204	49298205	rs4955417	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p21.31	NR	rs4955417-C	0.73668659950621	1E-10		0.010945298	[0.0076-0.0143] unit decrease	NR [NR]	N
961	chr3	49298204	49298205	rs4955417	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	3p21.31	NR	rs4955417-T	0.2653	5E-8		0.0132	[0.0085-0.0179] unit increase	Illumina [NR] (imputed)	N
961	chr3	49305139	49305140	rs58936320	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Depression	at least 5,919 European ancestry cases, at least 130,691 European ancestry controls	634,037 European ancestry cases, 1,308,690 European ancestry controls	3p21.31	C3orf62	rs58936320-T	0.4324	2E-14		0.018100373	[0.013-0.023] unit increase	NR [9417325] (imputed)	N
961	chr3	49311130	49311131	rs7614738	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3p21.31	C3orf62	rs7614738-G	0.5027	9E-10		0.02176757	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
961	chr3	49312247	49312248	rs143756010	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (binary sum-score)	148,752 European ancestry individuals	NA	3p21.31	NICN1, AMT, RNF123	rs143756010-C	0.956	7E-9		0.053	[0.035-0.071] unit decrease	NR [9413637] (imputed)	N
961	chr3	49313977	49313978	rs13077498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs13077498-T	NR	2E-17		0.0334	[0.026-0.041] unit increase	Affymetrix [9000000] (imputed)	N
961	chr3	49313977	49313978	rs13077498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs13077498-T	NR	6E-13		0.0277	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
961	chr3	49313977	49313978	rs13077498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs13077498-T	NR	2E-13		0.0283	[0.021-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
961	chr3	49314959	49314960	rs56306491	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs56306491-A	NR	2E-12		7.027	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
961	chr3	49317337	49317338	rs6778080	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	3p21.31	NR	rs6778080-T		3E-9		0.0271179	[0.018-0.036] unit increase	NR [6694342]	N
961	chr3	49317337	49317338	rs6778080	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3p21.31		rs6778080-T	0.267	1E-12		0.016	[0.012-0.02] unit increase	Affymetrix [up to 90000000] (imputed)	N
961	chr3	49318905	49318905	rs200550939	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p21.31	USP4	rs200550939-ATG	0.309069	3E-12		0.019769361	[0.014-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr3	49318905	49318905	rs200550939	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p21.31	NR	rs200550939-I	0.309438	7E-12		0.018466	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
961	chr3	49320182	49320183	rs9833388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p21.31		rs9833388-C	NR	2E-26		0.0303	[0.025-0.036] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
961	chr3	49320182	49320183	rs9833388	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p21.31	USP4	rs9833388-C	0.778522	5E-17		0.022252932	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr3	49320182	49320183	rs9833388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.31		rs9833388-?	NR	3E-39				NR [~ 8900000] (imputed)	N
961	chr3	49322026	49322027	rs2304442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p21.31		rs2304442-A	NR	8E-36		0.0365	[0.031-0.042] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
961	chr3	49328832	49328833	rs9811047	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p21.31	NR	rs9811047-C	0.742	6E-10		0.0103184	[0.0071-0.0136] unit increase	NR [9732723] (imputed)	N
961	chr3	49333078	49333079	rs75394422	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs75394422-C	NR	2E-18		0.3582	[0.28-0.44] SD units increase	NR [10700000] (imputed)	N
961	chr3	49334767	49334768	rs3774800	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3p21.31	ZNF589	rs3774800-A	0.354029	1E-9		6.06	z score decrease	NR [~ 10847151] (imputed)	N
961	chr3	49334796	49334797	rs35395347	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	CCDC36, USP4	rs35395347-G	0.07178715	8E-55	(EA, Thioredoxin domain-containing protein 12)	1.287	[1.14-1.44] unit decrease	Affymetrix [509946]	N
961	chr3	49338464	49338465	rs7640903	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	3p21.31		rs7640903-A	NR	6E-10		0.0339	[0.023-0.045] unit increase	Affymetrix [6193476] (imputed)	N
961	chr3	49340006	49340007	rs11713251	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs11713251-T	0.018	2E-54	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	1.41	[1.23-1.59] unit decrease	Affymetrix [10572788] (imputed)	N
961	chr3	49340006	49340007	rs11713251	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs11713251-T	0.018	2E-19	(PR domain zinc finger protein 1, PRDM1.14197.2.3)	0.84	[0.66-1.02] unit decrease	Affymetrix [10572788] (imputed)	N
961	chr3	49361790	49361791	rs13078949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p21.31	USP4	rs13078949-G	0.447187	3E-19		0.019965347	[0.016-0.024] unit increase	Affymetrix [93095623] (imputed)	N
961	chr3	49361790	49361791	rs13078949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs13078949-A	0.556755	3E-26				Affymetrix, Illumina [22063850] (imputed)	N
961	chr3	49361790	49361791	rs13078949	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p21.31	NR	rs13078949-A	0.556103	2E-29		0.022112	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
961	chr3	49367604	49367604	rs112008342	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p21.31	USP4	rs112008342-AAAAC	0.730238	9E-17		0.0241292	[0.019-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr3	49370543	49370544	rs9883813	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p21.31	Intergenic	rs9883813-C	0.1778	6E-9		0.0149	[0.01-0.0198] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
961	chr3	49373973	49373974	rs397989542	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p21.31		rs397989542-C	NR	1E-9		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
961	chr3	49374249	49374250	rs141260127	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	USP4	rs141260127-T	0.02729	3E-8		0.027245825	[0.018-0.037] unit increase	Affymetrix [up to 18485882] (imputed)	N
961	chr3	49381897	49381898	rs6774721	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p21.31	ARIH2	rs6774721-C	0.8782	3E-10		0.2457	[0.17-0.32] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
961	chr3	49381897	49381898	rs6774721	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs6774721-A	NR	1E-12		7.124	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
961	chr3	49381897	49381898	rs6774721	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p21.31	NR	rs6774721-?	NR	4E-8		0.01855	[0.012-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
961	chr3	49381897	49381898	rs6774721	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	USP4	rs6774721-A	NR	6E-11		0.028875554	[0.02-0.038] unit increase	Affymetrix [NR]	N
961	chr3	49382924	49382925	rs9818758	35043453	Qi G	2022-01-18	Genet Epidemiol	Genome-wide association studies of 27 accelerometry-derived physical activity measurements identified novel loci and genetic mechanisms.	Physical activity (Relative amplitude)	88,411 European ancestry individuals	NA	3p21.31		rs9818758-A	0.171	2E-9		0.036	unit decrease	Affymetrix [8951705] (imputed)	N
961	chr3	49382924	49382925	rs9818758	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3p21.31	USP4	rs9818758-A	0.1814	1E-13		0.0131	[0.0098-0.0164] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
961	chr3	49382924	49382925	rs9818758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	USP4	rs9818758-A	0.170036	2E-28		0.035832245	[0.029-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
961	chr3	49382924	49382925	rs9818758	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	3p21.31	USP4	rs9818758-A	0.2028	8E-10		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
961	chr3	49382924	49382925	rs9818758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3p21.31	USP4	rs9818758-A	0.1712	2E-49		0.07038824	[0.061-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
961	chr3	49382924	49382925	rs9818758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p21.31	USP4	rs9818758-A	0.1712	3E-46		0.06799804	[0.059-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
961	chr3	49382924	49382925	rs9818758	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	3p21.31	USP4	rs9818758-A	0.1712	6E-46		0.06757441	[0.058-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
961	chr3	49385416	49385417	rs13086611	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	3p21.31	Intergenic	rs13086611-?	NR	2E-14		0.0354476	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
961	chr3	49390249	49390250	rs17650792	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs17650792-A	NR	4E-10		6.243	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
961	chr3	49391081	49391082	rs13090388	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs13090388-C	0.335984	2E-11		0.050152812	[0.035-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
961	chr3	49391081	49391082	rs13090388	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	GPX1	rs13090388-T	0.2965	5E-22		0.02118857	[0.017-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
961	chr3	49391081	49391082	rs13090388	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	GPX1	rs13090388-T	NR	5E-24		0.03375395	[0.027-0.04] unit increase	Affymetrix [NR]	N
961	chr3	49391081	49391082	rs13090388	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs13090388-T	0.3104	3E-26		0.025552776	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
961	chr3	49393408	49393409	rs6790105	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3p21.31	NR	rs6790105-?	NR	2E-6		0.0489	[0.029-0.069] unit decrease	Illumina [at least 560000] (imputed)	N
961	chr3	49394833	49394834	rs1050450	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.31	GPX1	rs1050450-A		6E-11		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
961	chr3	49399258	49399259	rs1987628	29520040	Coleman JRI	2018-03-08	Mol Psychiatry	Biological annotation of genetic loci associated with intelligence in a meta-analysis of 87,740 individuals.	Extremely high intelligence	1,247 European ancestry cases, 86,493 European ancestry controls	NA	3p21.31	AMIGO3, AMT, APEH, BSN, CAMKV, CDHR4, DAG1, FAM212A, GMPPB, GNAT1, GPX1, IP6K1, MON1A, MST1, MST1R, NICN1, RBM5, RBM6, RHOA, RNF123, SEMA3F, TCTA, TRAIP, UBA7	rs1987628-A	0.319	4E-8		5.49	NR z score increase increase	Illumina [up to 12595966] (imputed)	N
961	chr3	49406707	49406708	rs148734725	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs148734725-A	0.3078	5E-22		106.19772	z score increase	NR [6814003]	N
961	chr3	49406707	49406708	rs148734725	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	3p21.31	NR	rs148734725-A	0.3236	5E-12		1.0450085	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
961	chr3	49413265	49413266	rs116656374	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs116656374-T	0.0373	3E-10		0.0242	[0.017-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
962	chr3	49414790	49414791	rs7623659	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs7623659-C	0.335984	9E-23		0.06596383	[0.053-0.079] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
962	chr3	49414790	49414791	rs7623659	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs7623659-T	0.3076	4E-57	(MTAG)	0.0395	[0.035-0.044] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
962	chr3	49414790	49414791	rs7623659	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs7623659-T	NR	1E-27		10.887	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
962	chr3	49415300	49415301	rs62259941	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	RHOA	rs62259941-A	0.076	1E-17		1.0594		Affymetrix [11880941] (imputed)	N
962	chr3	49418838	49418838	rs71627383	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	3p21.31		rs71627383-C,rs71627383-C	0.722529	4E-9		0.0254202	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
962	chr3	49418838	49418838	rs71627383	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	3p21.31		rs71627383-C,rs71627383-C	0.722529	4E-9		0.0254202	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
962	chr3	49421025	49421026	rs114870878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs114870878-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
962	chr3	49421025	49421026	rs114870878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs114870878-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
962	chr3	49424230	49424231	rs74433784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs74433784-G	NR	5E-17		0.04	[0.031-0.049] unit increase	Affymetrix [9000000] (imputed)	N
962	chr3	49424230	49424231	rs74433784	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs74433784-G	NR	5E-16		0.0407	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
962	chr3	49424236	49424237	rs77629332	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.31	NR	rs77629332-T	NR	2E-13		0.0722	[0.053-0.092] unit increase	Affymetrix [9000000] (imputed)	N
962	chr3	49425003	49425004	rs34071734	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3p21.31	NR	rs34071734-?	NR	3E-35	(TXD12)			Illumina [~ 4000000] (imputed)	N
962	chr3	49431159	49431160	rs7650253	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p21.31		rs7650253-A	NR	5E-17		0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
962	chr3	49431159	49431160	rs7650253	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	3p21.31	NR	rs7650253-T	0.310231	2E-10		0.994	[0.992, 0.996]	Affymetrix [39302896] (imputed)	N
962	chr3	49431159	49431160	rs7650253	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	3p21.31		rs7650253-?	NR	1E-9				NR [7857346] (imputed)	N
962	chr3	49431159	49431160	rs7650253	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	3p21.31		rs7650253-?	NR	5E-10				NR [7857346] (imputed)	N
962	chr3	49431159	49431160	rs7650253	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	3p21.31	NR	rs7650253-A	0.689684	2E-10		0.014562	[0.01-0.019] unit increase	Affymetrix [16668957] (imputed)	N
962	chr3	49431902	49431903	rs11716948	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RHOA	rs11716948-T	0.2886	1E-10		0.0145649975	[0.01-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
962	chr3	49431902	49431903	rs11716948	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	RHOA	rs11716948-T	NR	5E-9		5.837	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
962	chr3	49436487	49436487	rs562462868	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p21.31	RHOA	rs562462868-C	0.11437	7E-21		0.0316425	[0.025-0.038] unit increase	NR [16516521] (imputed)	N
962	chr3	49443080	49443081	rs13096474	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3p21.31	RHOA	rs13096474-T	0.259955	2E-9		1.0302483	NR	Affymetrix [~ 9600000] (imputed)	N
962	chr3	49448565	49448566	rs7623687	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3p21.31	AMT, RHOA, TCTA	rs7623687-A	0.8581	1E-8		0.0529	[0.035-0.071] unit increase	NR [8041861] (imputed)	N
962	chr3	49448565	49448566	rs7623687	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	3p21.31	RHOA	rs7623687-A	0.859	4E-10		1.076	[1.052-1.101]	Affymetrix [9149595] (imputed)	N
962	chr3	49448565	49448566	rs7623687	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	3p21.31	RHOA	rs7623687-A	0.86	2E-8		1.08	[1.05-1.10]	Affymetrix [9061845] (imputed)	N
962	chr3	49450863	49450864	rs6784820	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	TCTA	rs6784820-G	0.4403	1E-13		0.015084348	[0.011-0.019] unit decrease	Affymetrix [up to 18485882] (imputed)	N
962	chr3	49452956	49452957	rs7638750	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	3p21.31	NR	rs7638750-T	0.26	2E-17		0.0149421	[0.012-0.018] unit increase	NR [9732723] (imputed)	N
962	chr3	49453833	49453834	rs6997	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p21.31	TCTA, AMT, RHOA, NICN1	rs6997-?	NR	8E-6		0.0267	[0.015-0.038] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
962	chr3	49455329	49455330	rs11715915	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	3p21.31	AMT	rs11715915-C	0.668017	3E-7		0.011126	[0.0069-0.0154] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
962	chr3	49455329	49455330	rs11715915	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3p21.31	AMT, RHOA, DAG1, BSN	rs11715915-T	NR	4E-6	(GO:0009253|BP|07|peptidoglycan catabolic process)	4.633576	Z-score decrease	Illumina [8100000] (imputed)	N
962	chr3	49455329	49455330	rs11715915	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.31	TCTA	rs11715915-?	NR	5E-6	(CE 16:0)	0.17103979	[0.098-0.244] unit increase	Affymetrix [at least 2500000] (imputed)	N
962	chr3	49455985	49455986	rs9859556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs9859556-T	0.3132	5E-82		0.029	[0.026-0.032] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
962	chr3	49468688	49468689	rs80033912	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	NICN1	rs80033912-A	NR	3E-11		0.022916261	[0.016-0.03] unit increase	Affymetrix [NR]	N
962	chr3	49469962	49469962	rs150803770	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3p21.31	NICN1	rs150803770-TTTTATTTATTTA	NR	2E-8		0.0214748	[0.013-0.03] unit decrease	Affymetrix [16832071] (imputed)	N
962	chr3	49470667	49470668	rs7646366	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NICN1	rs7646366-A	NR	2E-19		9.04	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
962	chr3	49475688	49475689	rs11130194	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NICN1	rs11130194-A	NR	1E-11		6.764	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
962	chr3	49476805	49476806	rs13096760	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	NICN1	rs13096760-T	NR	9E-13		0.022073772	[0.016-0.028] unit increase	Affymetrix [NR]	N
962	chr3	49483073	49483074	rs57273516	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	3p21.31	NR	rs57273516-A		5E-8		0.0255575	[0.016-0.035] unit increase	NR [6694342]	N
962	chr3	49490487	49490488	rs114302200	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs114302200-T	NR	2E-11		0.047	[0.033-0.061] unit increase	Affymetrix [9000000] (imputed)	N
962	chr3	49492480	49492481	rs9841110	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioma	4,831 European ancestry male cases, 3,206 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	3p21.31	NR	rs9841110-C	NR	6E-8	(females)	1.22	[1.14-1.32]	Affymetrix, Illumina [NR] (imputed)	N
962	chr3	49492480	49492481	rs9841110	29743610	Ostrom QT	2018-05-09	Sci Rep	Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.	Glioblastoma	2,835 European ancestry male cases, 1,682 European ancestry female cases, 5,216 European ancestry male controls, 5,470 European ancestry female controls	NA	3p21.31	NR	rs9841110-C	NR	1E-7	(females)	1.27	[1.16-1.38]	Affymetrix, Illumina [NR] (imputed)	N
962	chr3	49495681	49495682	rs112978264	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.31		rs112978264-?	NR	2E-10				NR [~ 8900000] (imputed)	N
962	chr3	49496058	49496059	rs73073007	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs73073007-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
962	chr3	49502778	49502779	rs111599092	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	RNA5SP130	rs111599092-A	NR	9E-9		5.755	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
962	chr3	49504088	49504090	rs34240317	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Osteoporosis	8,520 European ancestry cases, 479,981 European ancestry controls, 9,794 East Asian ancestry cases, 168,932 East Asian ancestry controls	NA	3p21.31		rs34240317-A	NR	9E-12		0.1347	[0.096-0.173] unit decrease	Affymetrix, Illumina [25844994] (imputed)	N
962	chr3	49510930	49510931	rs7647973	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3p21.31	WDR6, UBA7	rs7647973-A	0.26	1E-16		0.05	[0.038-0.062] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
962	chr3	49511262	49511263	rs138484388	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs138484388-T	0.0224	1E-9		0.0306	[0.021-0.041] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
962	chr3	49513318	49513319	rs142316462	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p21.31	NR	rs142316462-?	NR	3E-6	(EA)	0.6756	[0.4-0.96] unit increase	Illumina [up to 11892802] (imputed)	N
962	chr3	49522542	49522543	rs7630869	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs7630869-T	0.3004	3E-21		102.75902	z score increase	NR [6814003]	N
962	chr3	49525217	49525218	rs111327216	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	DAG1	rs111327216-T	NR	4E-11		0.029683312	[0.021-0.038] unit increase	Affymetrix [NR]	N
962	chr3	49528748	49528748	rs563306865	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p21.31	NR	rs563306865-GT	0.37695500000000004	1E-11		0.0185953	[0.013-0.024] unit increase	Affymetrix [16585745] (imputed)	N
962	chr3	49533093	49533094	rs7374731	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.31	NR	rs7374731-G	0.746758451814017	9E-9		0.0076731513	[0.0051-0.0103] unit decrease	NR [NR]	N
962	chr3	49533093	49533094	rs7374731	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.31	NR	rs7374731-G	0.746758451814017	1E-8		0.0082107205	[0.0054-0.011] unit decrease	NR [NR]	N
962	chr3	49533093	49533094	rs7374731	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p21.31	NR	rs7374731-G	0.746758451814017	6E-9		0.006455743	[0.0043-0.0086] unit decrease	NR [NR]	N
962	chr3	49540113	49540114	rs11708955	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p21.31	NR	rs11708955-?		5E-24		0.0236991	[0.019-0.028] unit increase	Affymetrix [19400418] (imputed)	N
962	chr3	49540113	49540114	rs11708955	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	3p21.31	NR	rs11708955-?		4E-11		0.0157497	[0.011-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
962	chr3	49540113	49540114	rs11708955	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	DAG1	rs11708955-C	0.314	8E-12	(Killer cell lectin-like receptor subfamily F member 1, KLRF1.7756.37.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
962	chr3	49541700	49541700	rs536819065	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3p21.31	NR	rs536819065-?		3E-8	(Cingulate gyrus)			NR [8955960] (imputed)	N
962	chr3	49543514	49543515	rs149273410	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p21.31	NR	rs149273410-T	0.257723	2E-25		0.023757	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
962	chr3	49544228	49544229	rs56324858	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3p21.31	LAMB2	rs56324858-A	0.7746	3E-9		0.4756	[0.32-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
962	chr3	49544422	49544423	rs115970881	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs115970881-G	NR	7E-15		0.2509	[0.19-0.31] SD units decrease	NR [10700000] (imputed)	N
963	chr3	49545627	49545628	rs11344604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p21.31	DAG1	rs11344604-C	0.9297147	9E-11		0.03656722	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr3	49552703	49552704	rs759629469	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3p21.31		rs759629469-AT	0.689238	3E-10		0.028606	[0.02-0.038] unit decrease	NR [11722792] (imputed)	N
963	chr3	49553530	49553531	rs73074811	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.31		rs73074811-?	NR	6E-10				NR [~ 8900000] (imputed)	N
963	chr3	49565504	49565505	rs55935606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	DAG1	rs55935606-G	NR	1E-13		0.0267842	[0.02-0.034] unit decrease	Affymetrix [321114] (imputed)	N
963	chr3	49565504	49565505	rs55935606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	DAG1	rs55935606-G	NR	2E-9		0.0218165	[0.015-0.029] unit decrease	Affymetrix [321169] (imputed)	N
963	chr3	49568180	49568181	rs115435316	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs115435316-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
963	chr3	49572139	49572140	rs4625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p21.31	DAG1	rs4625-A	0.6992	1E-12		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
963	chr3	49572139	49572140	rs4625	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p21.31	DAG1	rs4625-A	0.679	1E-12		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
963	chr3	49572139	49572140	rs4625	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p21.31	NR	rs4625-G	NR	4E-10		0.01564	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
963	chr3	49572139	49572140	rs4625	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p21.31	IP6K2	rs4625-A	0.303255	1E-10		6.43	z score increase	NR [10847151] (imputed)	N
963	chr3	49572139	49572140	rs4625	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	3p21.31	DAG1	rs4625-G	0.31	8E-11				Illumina [7347414] (imputed)	N
963	chr3	49575913	49575913	rs34559126	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p21.31		rs34559126-?	NR	1E-8				NR [9705931] (imputed)	N
963	chr3	49577016	49577017	rs73074830	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p21.31		rs73074830-?	NR	2E-8				NR [~ 8900000] (imputed)	N
963	chr3	49579875	49579876	rs4855838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs4855838-G	0.791751	4E-24				Affymetrix, Illumina [20825802] (imputed)	N
963	chr3	49582123	49582123	rs145933528	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.31	BSN-AS2	rs145933528-CA	NR	9E-9		0.0213549	[0.014-0.029] unit decrease	Affymetrix [321114] (imputed)	N
963	chr3	49584744	49584745	rs3870341	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p21.31	NR	rs3870341-G	0.746119030860363	7E-9		0.009939011	[0.0066-0.0133] unit decrease	NR [NR]	N
963	chr3	49585242	49585243	rs56049603	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs56049603-G	NR	2E-22		0.029	[0.023-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
963	chr3	49596592	49596593	rs11130206	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	3p21.31	BSN	rs11130206-C	0.6	4E-10	(BMI-adjusted)	0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
963	chr3	49597054	49597055	rs55873331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs55873331-T	NR	1E-17		0.0348	[0.027-0.043] unit increase	Affymetrix [9000000] (imputed)	N
963	chr3	49597054	49597055	rs55873331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs55873331-T	NR	5E-13		0.0286	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
963	chr3	49597054	49597055	rs55873331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3p21.31	NR	rs55873331-T	NR	5E-9		0.0232	[0.015-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
963	chr3	49597054	49597055	rs55873331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs55873331-T	NR	3E-13		0.029	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
963	chr3	49597229	49597230	rs35999162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p21.31		rs35999162-?	NR	6E-13				NR [~ 8900000] (imputed)	N
963	chr3	49597229	49597230	rs35999162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.31		rs35999162-?	NR	6E-39				NR [~ 8900000] (imputed)	N
963	chr3	49606187	49606188	rs56116382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	BSN	rs56116382-C	0.177791	4E-35		0.037208308	[0.031-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr3	49606187	49606188	rs56116382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	BSN	rs56116382-C	0.177787	4E-18		0.026802246	[0.021-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
963	chr3	49606187	49606188	rs56116382	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	3p21.31	NR	rs56116382-?	NR	3E-22	(MSP)			Illumina [~ 4000000] (imputed)	N
963	chr3	49606187	49606188	rs56116382	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	BSN	rs56116382-C	0.1722	3E-11		0.017581249	[0.012-0.023] unit increase	Affymetrix [up to 18485882] (imputed)	N
963	chr3	49606187	49606188	rs56116382	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs56116382-A	NR	1E-13		7.416	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
963	chr3	49606187	49606188	rs56116382	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	BSN	rs56116382-A	NR	2E-10		6.379	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
963	chr3	49606187	49606188	rs56116382	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	BSN	rs56116382-A	NR	6E-13		0.028891288	[0.021-0.037] unit decrease	Affymetrix [NR]	N
963	chr3	49606187	49606188	rs56116382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte count	170,761 European ancestry individuals	NA	3p21.31	BSN	rs56116382-C	0.1783	5E-50		0.06945026	[0.06-0.079] unit decrease	Affymetrix [~ 2500000] (imputed)	N
963	chr3	49619492	49619493	rs34890793	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs34890793-C	0.147117	3E-8		0.048876308	[0.032-0.066] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
963	chr3	49621718	49621718	rs34680713	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p21.31	NR	rs34680713-A	NR	2E-10		1.061	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
963	chr3	49625932	49625933	rs150350500	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p21.31		rs150350500-C	NR	9E-16		0.088	[0.067-0.109] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
963	chr3	49631220	49631221	rs7632342	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3p21.31	BSN	rs7632342-T	0.2752	1E-20		0.03820068	[0.03-0.046] unit decrease	Affymetrix [~ 2500000] (imputed)	N
963	chr3	49634695	49634696	rs9875617	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3p21.31	NR	rs9875617-?	NR	9E-96	(MSP)			Illumina [~ 4000000] (imputed)	N
963	chr3	49638084	49638089	rs147141470	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	3p21.31	BSN	rs147141470-?	NR	4E-8		0.026	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
963	chr3	49642429	49642430	rs13064576	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p21.31		rs13064576-T	NR	2E-10		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
963	chr3	49642429	49642430	rs13064576	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3p21.31	BSN	rs13064576-T	0.3183	6E-8		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
963	chr3	49642946	49642948	rs368926536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3p21.31		rs368926536-A	NR	2E-22		0.0244	[0.02-0.029] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
963	chr3	49643173	49643177	rs369849874	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	BSN	rs369849874-A	0.374	8E-21	(C-C motif chemokine 19, CCL19.4922.13.1)	0.24	[0.18-0.3] unit decrease	Affymetrix [10572788] (imputed)	N
963	chr3	49644011	49644012	rs11917431	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs11917431-C	0.331014	2E-12		0.05283116	[0.038-0.068] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
963	chr3	49644011	49644012	rs11917431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs11917431-T	0.3079	9E-51	(MTAG)	0.0291	[0.025-0.033] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
963	chr3	49644011	49644012	rs11917431	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs11917431-T	0.3084	4E-82	(MTAG)	0.0343	[0.031-0.038] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
963	chr3	49644192	49644193	rs11921590	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p21.31	Intergenic	rs11921590-T	0.692	9E-32		0.0248	[0.021-0.029] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
963	chr3	49646205	49646206	rs62262670	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1	5,368 Icelandic ancestry individuals	NA	3p21.31		rs62262670-T	0.06002	1E-8		0.230736	[0.15-0.31] unit increase	Illumina [7506463] (imputed)	N
963	chr3	49646205	49646206	rs62262670	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	BSN	rs62262670-T	0.07769999999999999	1E-17		1.0590976		Affymetrix [11880941] (imputed)	N
963	chr3	49646980	49646981	rs2029591	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3p21.31	NR	rs2029591-T	0.1601	1E-9		0.03380248	[0.023-0.045] unit increase	NR [NR]	N
963	chr3	49649872	49649873	rs62262671	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3p21.31	BSN	rs62262671-G	NR	4E-8		1.12	1.07-1.16	Affymetrix [at least 232408] (imputed)	N
963	chr3	49649872	49649873	rs62262671	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking cessation	450,129 European ancestry individuals	NA	3p21.31	BSN	rs62262671-A		4E-8		0.964	[NR]	Affymetrix [up to 79000000] (imputed)	N
963	chr3	49649872	49649873	rs62262671	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs62262671-A	0.8634	2E-25		0.0213	[0.017-0.025] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
963	chr3	49650394	49650395	rs7614725	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs7614725-A	0.3041	2E-20		98.88907	z score increase	NR [6814003]	N
963	chr3	49650934	49650935	rs9866749	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3p21.31		rs9866749-A	0.296	5E-18		0.11	[0.08-0.13] % increase	Affymetrix [NR] (imputed)	N
963	chr3	49651602	49651603	rs146231194	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs146231194-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
963	chr3	49652155	49652156	rs1352890	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	BSN	rs1352890-T	0.4715	1E-11		0.013653504	[0.0097-0.0176] unit decrease	Affymetrix [up to 18485882] (imputed)	N
963	chr3	49654710	49654731	rs11272058	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p21.31		rs11272058-A	NR	1E-12		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
963	chr3	49655926	49655927	rs62262672	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	3p21.31		rs62262672-A	0.17595	2E-7		1.1014429	NR	Affymetrix [7846216] (imputed)	N
963	chr3	49656147	49656148	rs116046827	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3p21.31	BSN	rs116046827-?	NR	8E-11	(subset analysis)			Illumina [130052]	N
963	chr3	49656530	49656534	rs67035515	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3p21.31	BSN	rs67035515-?	0.18	2E-8		1.07	[1.05-1.08]	Illumina [at least 560000] (imputed)	N
963	chr3	49656530	49656534	rs67035515	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3p21.31	BSN	rs67035515-?	NR	2E-8		1.067	[1.043-1.091]	Illumina [13754664] (imputed)	N
963	chr3	49658083	49658084	rs13096480	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	BSN	rs13096480-A	NR	2E-11		0.0256482	[0.018-0.033] unit decrease	Affymetrix [NR]	N
963	chr3	49666963	49666964	rs1873625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p21.31	Intergenic	rs1873625-C	0.6895	5E-30		0.0279	[0.023-0.033] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
963	chr3	49666963	49666964	rs1873625	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs1873625-A	0.3056	2E-95	(MTAG)	0.0295	[0.027-0.032] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
963	chr3	49671036	49671037	rs73077107	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.31	BSN	rs73077107-A	NR	5E-10		0.0290821	[0.02-0.038] unit increase	Affymetrix [321114] (imputed)	N
963	chr3	49671653	49671654	rs1826347	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs1826347-A	NR	8E-9		5.765	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
963	chr3	49675333	49675334	rs11710037	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs11710037-?	NR	5E-21				Affymetrix [~ 8270000] (imputed)	N
964	chr3	49678306	49678307	rs2172252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PRDM1	5,354 Icelandic ancestry individuals	NA	3p21.31		rs2172252-T	0.3148	8E-63		0.318589	[0.28-0.36] unit decrease	Illumina [7506463] (imputed)	N
964	chr3	49678306	49678307	rs2172252	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p21.31	BSN-AS1	rs2172252-?	NR	2E-16		8.22	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
964	chr3	49678650	49678651	rs4283605	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	3p21.31	NR	rs4283605-A		6E-7				Illumina [458865]	N
964	chr3	49678650	49678651	rs4283605	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p21.31	BSN	rs4283605-?	NR	5E-6		0.0296	[0.017-0.042] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
964	chr3	49686681	49686682	rs6770670	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FASLG	5,366 Icelandic ancestry individuals	NA	3p21.31		rs6770670-C	0.3145	7E-89		0.392266	[0.35-0.43] unit increase	Illumina [7506463] (imputed)	N
964	chr3	49686681	49686682	rs6770670	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	BSN	rs6770670-C	0.294	8E-77	(Erythrocyte band 7 integral membrane protein, STOM.8261.51.3)	0.47	[0.41-0.53] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49687485	49687486	rs55754265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	BSN	rs55754265-T	NR	9E-14		0.0305733	[0.023-0.039] unit decrease	Affymetrix [321114] (imputed)	N
964	chr3	49687485	49687486	rs55754265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.31	BSN	rs55754265-T	NR	6E-11		0.026917	[0.019-0.035] unit decrease	Affymetrix [321169] (imputed)	N
964	chr3	49687485	49687486	rs55754265	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs55754265-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
964	chr3	49690495	49690496	rs11709525	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	MSP plasma levels	400 French ancestry individuals	NA	3p21.31		rs11709525-C	NR	5E-29		0.706	[0.63-0.78] ng/mL decrease	Illumina [5201092] (imputed)	N
964	chr3	49696150	49696151	rs115548824	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.31		rs115548824-?	NR	3E-8				NR [~ 8900000] (imputed)	N
964	chr3	49696796	49696797	rs11718165	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3p21.31	BSN	rs11718165-?	NR	6E-8		0.0327978	[0.021-0.045] unit decrease	Illumina [4804024] (imputed)	N
964	chr3	49697458	49697459	rs9836291	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Crohn's disease vs rheumatoid arthritis (ordinary least squares (OLS))	5,956 Crohn's disease cases, 8,875 rheumatoid arthritis cases	14,594 Crohn's disease cases, 5,486 rheumatoid arthritis cases	3p21.31		rs9836291-?	NR	6E-6		0.038	NR unit increase	NR [5890016] (imputed)	N
964	chr3	49697458	49697459	rs9836291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	BSN	rs9836291-A	0.291526	2E-33		0.034024157	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
964	chr3	49697458	49697459	rs9836291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	BSN	rs9836291-A	0.291536	3E-57		0.04110019	[0.036-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
964	chr3	49697458	49697459	rs9836291	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs9836291-?	NR	1E-52	(EA)			Affymetrix, Illumina [~ 9000000] (imputed)	N
964	chr3	49701982	49701983	rs9858542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p21.31	BSN	rs9858542-A	0.291368	2E-12		0.017357592	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
964	chr3	49701982	49701983	rs9858542	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	MST1, AMT, APEH, BSN, GPX1, NICN1, DAG1, RNF123, RHOA, RHOA-IT1, TCTA, RNA5SP130, BSN-AS2, BSN-AS1, AC099668.1, AC099668.5	rs9858542-A	0.278169	1E-242	(Hepatocyte growth factor-like protein)	1.299	[1.24-1.36] unit decrease	Affymetrix [509946]	N
964	chr3	49701982	49701983	rs9858542	19915572	Barrett JC	2009-11-15	Nat Genet	Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.	Ulcerative colitis	2,361 European ancestry cases, 5,417 European ancestry controls	2,321 European ancestry cases, 4,818 European ancestry controls	3p21.31	MST1	rs9858542-?	NR	7E-9				Affymetrix [NR]	N
964	chr3	49701982	49701983	rs9858542	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Crohn's disease	1,748 European ancestry cases, 2,938 European ancestry controls	(see Parkes 2007)	3p21.31	MST1, BSN	rs9858542-A	0.28	4E-8		1.09	[0.96-1.24]	Affymetrix [469557]	N
964	chr3	49701982	49701983	rs9858542	17554261	Parkes M	2007-06-06	Nat Genet	Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility.	Crohn's disease	1,748 cases, 2,938 controls	1,182 European ancestry cases, 2,024 European ancestry controls	3p21.31	MST1	rs9858542-?	0.29	5E-8		1.17	[1.14-1.31]	Affymetrix [see WTCCC]	N
964	chr3	49706698	49706699	rs36116071	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LHCGR	5,361 Icelandic ancestry individuals	NA	3p21.31		rs36116071-G	0.1009	7E-11		0.200777	[0.14-0.26] unit decrease	Illumina [7506463] (imputed)	N
964	chr3	49706735	49706736	rs56176327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.31	BSN	rs56176327-C	NR	1E-8		0.0259619	[0.017-0.035] unit decrease	Affymetrix [319769] (imputed)	N
964	chr3	49706735	49706736	rs56176327	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	BSN	rs56176327-C	NR	2E-9		0.0272851	[0.018-0.036] unit decrease	Affymetrix [319769] (imputed)	N
964	chr3	49706735	49706736	rs56176327	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs56176327-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
964	chr3	49706735	49706736	rs56176327	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	BSN	rs56176327-C	NR	2E-9		0.03019527	[0.02-0.04] unit decrease	Affymetrix [NR]	N
964	chr3	49709912	49709912	rs371314787	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	APEH	rs371314787-CT	0.29	9E-17	(Tumor necrosis factor ligand superfamily member 6, soluble form, FASLG.3052.8.2)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
964	chr3	49710478	49710479	rs13093385	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	APEH	rs13093385-T	0.295	1E-153	(PR domain zinc finger protein 1, PRDM1.14197.2.3)	0.64	[0.6-0.68] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49712296	49712297	rs11130213	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Ulcerative colitis vs rheumatoid arthritis (ordinary least squares (OLS))	6,968 ulcerative colitis cases, 8,875 rheumatoid arthritis cases	10,679 ulcerative colitis cases, 5,486 rheumatoid arthritis cases	3p21.31		rs11130213-?	NR	5E-7		0.043	NR unit increase	NR [5896510] (imputed)	N
964	chr3	49713545	49713546	rs754051626	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	3p21.31		rs754051626-?	NR	1E-9		0.90701	[0.62-1.2] unit decrease	NR [9800000] (imputed)	N
964	chr3	49713545	49713546	rs754051626	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	3p21.31		rs754051626-?	NR	4E-10		0.93008	[0.65-1.21] unit decrease	NR [9800000] (imputed)	N
964	chr3	49713545	49713546	rs754051626	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin levels	445,373 European ancestry individuals	NA	3p21.31		rs754051626-?	NR	8E-9		0.865285	[0.57-1.16] unit decrease	NR [9800000] (imputed)	N
964	chr3	49717794	49717795	rs41290716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs41290716-A	NR	2E-18		0.0416	[0.032-0.051] unit increase	Affymetrix [9000000] (imputed)	N
964	chr3	49717794	49717795	rs41290716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs41290716-A	NR	8E-16		0.0403	[0.031-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
964	chr3	49719728	49719729	rs9822268	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	3p21.31	APEH	rs9822268-A	NR	7E-11		0.013162	[0.0092-0.0171] unit increase	Affymetrix [18485882] (imputed)	N
964	chr3	49719728	49719729	rs9822268	21297633	Anderson CA	2011-02-06	Nat Genet	Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.	Ulcerative colitis	6,687 European ancestry cases, 19,718 European ancestry controls	9,628 European ancestry cases, 12,917 European ancestry controls	3p21.31	UBA7, MST1, APEH, AMIGO3, GMPPB, BSN	rs9822268-A	0.30	2E-17		1.21	[1.16-1.26]	Affymetrix, Illumina [~ 1100000] (imputed)	N
964	chr3	49721531	49721532	rs3197999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC12	5,356 Icelandic ancestry individuals	NA	3p21.31		rs3197999-A	0.3101	2E-11		0.132475	[0.094-0.171] unit increase	Illumina [7506463] (imputed)	N
964	chr3	49721531	49721532	rs3197999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMPRSS11D	5,357 Icelandic ancestry individuals	NA	3p21.31		rs3197999-A	0.3101	2E-61		0.313295	[0.28-0.35] unit decrease	Illumina [7506463] (imputed)	N
964	chr3	49721531	49721532	rs3197999	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LHCGR	5,361 Icelandic ancestry individuals	NA	3p21.31		rs3197999-A	0.3101	1E-258		0.618167	[0.58-0.65] unit increase	Illumina [7506463] (imputed)	N
964	chr3	49721531	49721532	rs3197999	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	MST1	rs3197999-A	0.288	4E-48	(Tensin-2, TNS2.11667.29.3)	0.38	[0.32-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49721531	49721532	rs3197999	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	MST1	rs3197999-A	0.288	3E-96	(Transmembrane protease serine 11D, TMPRSS11D.6547.83.3)	0.53	[0.47-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49721531	49721532	rs3197999	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	MST1	rs3197999-A	0.288	2E-13	(Beta-crystallin B2, CRYBB2.10000.28.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49721531	49721532	rs3197999	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	MST1	rs3197999-A	0.288	1E-28	(Dedicator of cytokinesis protein 9, DOCK9.14002.18.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49721531	49721532	rs3197999	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Ulcerative colitis	12,366 European and unknown ancestry cases, 33,609 European and unknown ancestry controls	NA	3p21.31	TMA7, TREX1, UCN2, TMEM89, SLC26A6, WDR6, NDUFAF3, IMPDH2, KLHDC8B, RP11-3B7.1, C3orf62, GPX1, TCTA, AMT, APEH, PLXNB1, CCDC51, SHISA5, PFKFB4, UQCRC1, CELSR3, NCKIPSD, PRKAR2A, SLC25A20, ARIH2OS, P4HTM, DALRD3, QRICH1, QARS, LAMB2, CCDC71, C3orf84, USP4, NICN1, MST1, RNF123, ATRIP, COL7A1, IP6K2, ARIH2, USP19, RHOA, DAG1, BSN, CCDC36	rs3197999-?		8E-20				Illumina [9578670] (imputed)	N
964	chr3	49721531	49721532	rs3197999	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	3p21.31	TMA7, TREX1, UCN2, TMEM89, SLC26A6, WDR6, NDUFAF3, IMPDH2, KLHDC8B, RP11-3B7.1, C3orf62, GPX1, TCTA, AMT, APEH, PLXNB1, CCDC51, SHISA5, PFKFB4, UQCRC1, CELSR3, NCKIPSD, PRKAR2A, SLC25A20, ARIH2OS, P4HTM, DALRD3, QRICH1, QARS, LAMB2, CCDC71, C3orf84, USP4, NICN1, MST1, RNF123, ATRIP, COL7A1, IP6K2, ARIH2, USP19, RHOA, DAG1, BSN, CCDC36	rs3197999-?		1E-33				Illumina [9725440] (imputed)	N
964	chr3	49721531	49721532	rs3197999	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3p21.31	TMA7, TREX1, UCN2, TMEM89, SLC26A6, WDR6, NDUFAF3, IMPDH2, KLHDC8B, RP11-3B7.1, C3orf62, GPX1, TCTA, AMT, APEH, PLXNB1, CCDC51, SHISA5, PFKFB4, UQCRC1, CELSR3, NCKIPSD, PRKAR2A, SLC25A20, ARIH2OS, P4HTM, DALRD3, QRICH1, QARS, LAMB2, CCDC71, C3orf84, USP4, NICN1, MST1, RNF123, ATRIP, COL7A1, IP6K2, ARIH2, USP19, RHOA, DAG1, BSN, CCDC36	rs3197999-?		3E-23				Illumina [9560910] (imputed)	N
964	chr3	49721531	49721532	rs3197999	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	3p21.31	MST1	rs3197999-A	0.3	5E-26		1.33	[1.26-1.40]	Affymetrix, Illumina [7891602] (imputed)	N
964	chr3	49721531	49721532	rs3197999	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3p21.31	MST1	rs3197999-?	NR	7E-55	(subset analysis)			Illumina [130052]	N
964	chr3	49721531	49721532	rs3197999	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs3197999-A	0.2812	2E-37	(EA)	1.1865767	[1.16-1.21]	Affymetrix, Illumina [~ 9000000] (imputed)	N
964	chr3	49721531	49721532	rs3197999	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.31	NR	rs3197999-A	0.2812	2E-33	(EA)	1.1677914	[1.14-1.19]	Affymetrix, Illumina [~ 9000000] (imputed)	N
964	chr3	49721531	49721532	rs3197999	25082827	Julia A	2014-07-31	Hum Mol Genet	A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.	Ulcerative colitis	up to 7,483 European ancestry cases, up to 21,211 European ancestry controls	1,073 European ancestry cases, 1,279 European ancestry controls	3p21.31	PFKFB4, MST1R, UCN2, GPX1, IP6K2, BSN, IP6K1, USP4, MST1	rs3197999-?	NR	8E-7	(Southern European)	1.38	[1.21-1.56]	Illumina [546271]	N
964	chr3	49721531	49721532	rs3197999	23603763	Liu JZ	2013-06-01	Nat Genet	Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.	Primary sclerosing cholangitis	3,789 European ancestry cases, 25,079 European ancestry controls	NA	3p21.31	MST1	rs3197999-A	0.285	2E-26		1.33	[1.26-1.40]	Illumina [140322] (imputed)	N
964	chr3	49721531	49721532	rs3197999	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Inflammatory bowel disease	12,924 European ancestry cases, 21,442 European ancestry controls	25,683 European ancestry cases, 17,015 European ancestry controls	3p21.31	PFKFB4, MST1R, UCN2, IP6K2, MST1, IP6K1, GPX1, USP4, BSN	rs3197999-A	0.296	1E-47		1.18	[1.144-1.216]	Affymetrix, Illumina [1230000] (imputed)	N
964	chr3	49721531	49721532	rs3197999	21151127	Melum E	2010-12-12	Nat Genet	Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci.	Primary sclerosing cholangitis	715 European ancestry cases, 2,962 European ancestry controls	1,025 European ancestry cases, 2,174 European ancestry controls	3p21.31	MST1	rs3197999-?	0.28	1E-16		1.39	[1.24-1.56]	Affymetrix [2466182] (imputed)	N
964	chr3	49721531	49721532	rs3197999	21102463	Franke A	2010-11-21	Nat Genet	Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.	Crohn's disease	6,333 European ancestry cases, 15,056 European ancestry controls	15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios	3p21.31	MST1, GPX1, BSN	rs3197999-A	0.297	6E-17		1.22	[1.16-1.27]	Affymetrix, Illumina [953241] (imputed)	N
964	chr3	49721531	49721532	rs3197999	20228799	McGovern DP	2010-03-14	Nat Genet	Genome-wide association identifies multiple ulcerative colitis susceptibility loci.	Ulcerative colitis	2,693 European ancestry cases, 6,791 European ancestry controls	2,009 European ancestry cases, 1,580 European ancestry controls	3p21.31	MST1	rs3197999-T	NR	4E-9		1.21	[NR]	Illumina [266047]	N
964	chr3	49721531	49721532	rs3197999	18587394	Barrett JC	2008-06-29	Nat Genet	Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease.	Crohn's disease	3,230 European ancestry cases, 4,829 European ancestry controls	1,339 European ancestry trios, 2,325 European ancestry cases, 1,809 European ancestry controls	3p21.31	MST1	rs3197999-A	0.27	1E-12		1.2	[NR]	Affymetrix, Illumina [635547] (imputed)	N
964	chr3	49721797	49721798	rs13085791	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	MST1	rs13085791-A	0.295	3E-59	(Alcohol dehydrogenase 1B, ADH1B.9834.62.3)	0.42	[0.36-0.48] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49721811	49721812	rs142690032	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MST1	5,368 Icelandic ancestry individuals	NA	3p21.31		rs142690032-A	0.0137	1E-30		0.938408	[0.78-1.1] unit decrease	Illumina [7506463] (imputed)	N
964	chr3	49722355	49722356	rs9837520	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	3p21.31	RHOA, TCTA, AMT, NICN1, DAG1, BSN-AS2, BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, MIR5193, TRAIP, CAMKV, MST1R, MON1A, RBM6	rs9837520-G	0.721597	3E-8		0.00461661	[0.003-0.0062] unit decrease	NR [NR] (imputed)	N
964	chr3	49726177	49726178	rs147997200	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs147997200-A	0.087	7E-38	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	0.55	[0.47-0.63] unit increase	Affymetrix [10572788] (imputed)	N
964	chr3	49730624	49730625	rs9852529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs9852529-G	0.68796875	9E-126	(LHCGR, 14634_13_3)	0.60653615	[0.56-0.65] unit decrease	Illumina [> 1000000] (imputed)	N
964	chr3	49730624	49730625	rs9852529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs9852529-G	0.68796875	6E-996	(MST1, 4407_10_1)	1.3350978	[1.31-1.36] unit increase	Illumina [> 1000000] (imputed)	N
964	chr3	49730624	49730625	rs9852529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs9852529-G	0.68796875	2E-34	(TMPRSS11D, 6547_83_3)	0.3258922	[0.27-0.38] unit increase	Illumina [> 1000000] (imputed)	N
964	chr3	49730624	49730625	rs9852529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs9852529-G	0.68796875	1E-43	(FASLG, 3052_8_2)	0.3647245	[0.31-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
964	chr3	49730624	49730625	rs9852529	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs9852529-G	0.68796875	1E-39	(PRDM1, 14197_2_3)	0.34375605	[0.29-0.39] unit increase	Illumina [> 1000000] (imputed)	N
964	chr3	49730624	49730625	rs9852529	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p21.31	NR	rs9852529-A	0.288666	1E-9		6.12	z score decrease	NR [10847151] (imputed)	N
964	chr3	49731860	49731861	rs9858213	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	3p21.31	intergenic	rs9858213-T	0.288	5E-9		0.028	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
964	chr3	49737953	49737954	rs35620248	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs35620248-A	0.061	8E-184	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	1.34	[1.24-1.44] unit decrease	Affymetrix [10572788] (imputed)	N
964	chr3	49740894	49740895	rs35726701	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs35726701-G	NR	1E-21		0.0817	[0.065-0.098] unit increase	Affymetrix [9000000] (imputed)	N
964	chr3	49746569	49746570	rs112017743	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	RNF123	rs112017743-C	0.07469999999999999	3E-18		1.0608954		Affymetrix [11880941] (imputed)	N
964	chr3	49749648	49749648	rs549664712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p21.31	NR	rs549664712-C	0.670806	3E-15		0.0109311	[0.0082-0.0137] unit increase	Affymetrix [16585854] (imputed)	N
964	chr3	49749648	49749648	rs549664712	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p21.31	NR	rs549664712-C	0.670806	1E-16		0.0133517	[0.01-0.016] unit increase	Affymetrix [16585866] (imputed)	N
964	chr3	49749704	49749705	rs73077157	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RNF123	rs73077157-C	0.1256	1E-14		0.023429086	[0.017-0.029] unit increase	Affymetrix [up to 18485882] (imputed)	N
964	chr3	49749704	49749705	rs73077157	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	3p21.31	RNF123	rs73077157-C	NR	1E-8		0.011457	[0.0075-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
964	chr3	49749704	49749705	rs73077157	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p21.31		rs73077157-?	NR	4E-26				NR [~ 8900000] (imputed)	N
964	chr3	49749975	49749976	rs34823813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs34823813-A	NR	2E-17		0.0345	[0.026-0.043] unit increase	Affymetrix [9000000] (imputed)	N
964	chr3	49749975	49749976	rs34823813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs34823813-A	NR	4E-13		0.0288	[0.021-0.037] unit increase	Affymetrix [9000000] (imputed)	N
964	chr3	49749975	49749976	rs34823813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3p21.31	NR	rs34823813-A	NR	4E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
964	chr3	49749975	49749976	rs34823813	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs34823813-A	NR	2E-13		0.0292	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
964	chr3	49751584	49751585	rs2291542	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p21.31	NA	rs2291542-T	0.3272	2E-20		0.0168	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
964	chr3	49753002	49753003	rs34614773	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.31	RNF123	rs34614773-T		6E-12		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
964	chr3	49754969	49754970	rs7628207	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3p21.31	RNF123, AMIGO3, GMPPB	rs7628207-T	0.1766	8E-10		0.0195	[0.013-0.026] unit increase	NR [NR]	N
964	chr3	49760430	49760431	rs34345884	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.31	RNF123	rs34345884-C	0.0214	6E-10		0.0406	[0.028-0.054] unit decrease	Affymetrix [18391927] (imputed)	N
964	chr3	49761612	49761613	rs3811695	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs3811695-T	0.5019	2E-15		74.746284	z score increase	NR [6814003]	N
964	chr3	49762778	49762779	rs11716895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TXNDC12	5,356 Icelandic ancestry individuals	NA	3p21.31		rs11716895-A	0.0137	5E-65		1.31738	[1.17-1.47] unit decrease	Illumina [7506463] (imputed)	N
964	chr3	49768926	49768927	rs62262721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs62262721-T	0.9646	4E-9	(MTAG)	0.0367	[0.025-0.049] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
964	chr3	49768926	49768927	rs62262721	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs62262721-T	0.9624	3E-9		0.042268492	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
964	chr3	49770031	49770032	rs3749237	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p21.31	NR	rs3749237-?	NR	8E-10		0.13837	[0.094-0.183] unit increase	Affymetrix [7794483] (imputed)	N
964	chr3	49770031	49770032	rs3749237	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p21.31	NR	rs3749237-?	NR	2E-6	(female)	0.17486	[0.1-0.25] unit increase	Affymetrix [7794483] (imputed)	N
964	chr3	49770031	49770032	rs3749237	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	3p21.31	IP6K1	rs3749237-G	0.677902	4E-7		0.347552	[0.21-0.48] unit decrease	Affymetrix [~ 7800000] (imputed)	N
964	chr3	49770031	49770032	rs3749237	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	IP6K1	rs3749237-G		4E-7		0.208	unit decrease	Affymetrix [at least 2696785] (imputed)	N
964	chr3	49770031	49770032	rs3749237	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	IP6K1	rs3749237-G		4E-11		0.165	unit decrease	Affymetrix [at least 2696785] (imputed)	N
964	chr3	49770031	49770032	rs3749237	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3p21.31	IP6K1, GMPPB, FAM212A, DAG1, KLHDC8B, LAMB2, PRKAR2A, QRICH1	rs3749237-A	0.32	3E-13		0.2583	[0.19-0.33] unit increase	Affymetrix [19941912] (imputed)	N
964	chr3	49771819	49771820	rs181404049	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.31		rs181404049-?	NR	3E-23		0.0773966	[0.061-0.094] unit decrease	Affymetrix [20259828] (imputed)	N
964	chr3	49771942	49771943	rs3206653	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs3206653-T	NR	3E-13		0.0384	[0.028-0.049] unit increase	Affymetrix [9000000] (imputed)	N
964	chr3	49772646	49772647	rs7618501	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	IP6K1	rs7618501-G	0.4914	5E-26		0.02131989	[0.017-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
964	chr3	49772646	49772647	rs7618501	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	IP6K1	rs7618501-A	NR	1E-31		0.035924464	[0.03-0.042] unit decrease	Affymetrix [NR]	N
964	chr3	49772707	49772708	rs7618519	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	IP6K1	rs7618519-A	NR	9E-22		9.587	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
964	chr3	49774657	49774658	rs73077175	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p21.31	IP6K1	rs73077175-A	NR	2E-8		0.017546	[0.011-0.024] unit increase	Affymetrix [321788] (imputed)	N
964	chr3	49774657	49774658	rs73077175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	IP6K1	rs73077175-A	0.334586	3E-14		0.020300806	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
964	chr3	49774657	49774658	rs73077175	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	IP6K1	rs73077175-A	0.33458	5E-10		0.01661502	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
964	chr3	49774657	49774658	rs73077175	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p21.31	IP6K1	rs73077175-A	0.3329	3E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
964	chr3	49786126	49786127	rs113016568	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs113016568-A	0.0109	1E-8	(MTAG)	0.0462	[0.03-0.062] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
964	chr3	49789933	49789933	rs200144259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p21.31		rs200144259-CA	NR	3E-12		0.0163	[0.012-0.021] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
964	chr3	49792022	49792023	rs9872864	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	3p21.31	IP6K1	rs9872864-G		7E-10				Illumina [458525]	N
964	chr3	49794347	49794347	rs35365539	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	Intergenic	rs35365539-?	0.4769076	1E-13	(EA, Thioredoxin domain-containing protein 12)	0.3196	[0.24-0.4] unit decrease	Affymetrix [509946]	N
964	chr3	49797768	49797769	rs9835157	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	3p21.31	NR	rs9835157-A		4E-10		0.0334667	[0.023-0.044] unit increase	NR [6694342]	N
964	chr3	49798125	49798126	rs146601862	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	IP6K1	rs146601862-C	0.02226	2E-8		0.03781894	[0.025-0.051] unit increase	Affymetrix [up to 18485882] (imputed)	N
965	chr3	49808006	49808007	rs115506546	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs115506546-A	0.0377734	2E-10		0.11653294	[0.08-0.153] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
965	chr3	49808617	49808618	rs7652179	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p21.31	NA	rs7652179-T		3E-12		0.0167056	[0.012-0.021] unit decrease	Illumina [13288253] (imputed)	N
965	chr3	49811413	49811415	rs10575617	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p21.31		rs10575617-A	NR	5E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
965	chr3	49819664	49819665	rs59906301	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p21.31	NR	rs59906301-G	0.67899	3E-23		0.00902038	[0.0073-0.0108] unit increase	Affymetrix [16582909] (imputed)	N
965	chr3	49819664	49819665	rs59906301	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p21.31	NR	rs59906301-G	0.67899	4E-30		0.0112574	[0.0093-0.0132] unit increase	Affymetrix [16582965] (imputed)	N
965	chr3	49820444	49820445	rs147026698	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p21.31	Intergenic	rs147026698-C	0.9743	5E-9		0.0361	[0.024-0.048] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
965	chr3	49821361	49821362	rs116238056	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs116238056-G	NR	5E-14		0.2525	[0.19-0.32] SD units decrease	NR [10700000] (imputed)	N
965	chr3	49824755	49824756	rs77448841	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.31	NR	rs77448841-A	NR	9E-14		0.0744	[0.055-0.094] unit increase	Affymetrix [9000000] (imputed)	N
965	chr3	49832787	49832788	rs73079003	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3p21.31		rs73079003-A	NR	3E-8		0.0208	[0.014-0.028] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
965	chr3	49832787	49832788	rs73079003	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	NR	rs73079003-A	0.121	7E-113	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	0.79	[0.73-0.85] unit increase	Affymetrix [10572788] (imputed)	N
965	chr3	49833028	49833029	rs62260717	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs62260717-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
965	chr3	49833903	49833904	rs73079004	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs73079004-C	NR	5E-9		5.847	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
965	chr3	49834766	49834767	rs71324996	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	CDHR4	rs71324996-A	NR	2E-13		7.355	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
965	chr3	49835449	49835450	rs6790568	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p21.31		rs6790568-?	NR	8E-9				NR [~ 8900000] (imputed)	N
965	chr3	49835648	49835648	rs528118788	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p21.31		rs528118788-GT	NR	2E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
965	chr3	49839624	49839624	rs148427552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p21.31		rs148427552-CT	NR	5E-14		0.0192	[0.014-0.024] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
965	chr3	49843722	49843723	rs3819325	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p21.31	NR	rs3819325-?	NR	3E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix [10847151] (imputed)	N
965	chr3	49860853	49860854	rs6446298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3p21.31		rs6446298-?	NR	2E-9				NR [~ 8900000] (imputed)	N
965	chr3	49860853	49860854	rs6446298	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	ENSG00000263651	rs6446298-T	NR	4E-10		0.019206112	[0.013-0.025] unit increase	Affymetrix [NR]	N
965	chr3	49863482	49863483	rs73079014	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.31		rs73079014-C	0.875	7E-18		0.015	[0.011-0.019] unit increase	NR [NR] (imputed)	N
965	chr3	49863482	49863483	rs73079014	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NR	rs73079014-C	0.874	4E-8		1.0504202	[1.03-1.07]	Affymetrix, Illumina [NR] (imputed)	N
965	chr3	49864924	49864924	rs111488606	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	3p21.31		rs111488606-C	0.559627	3E-8		0.0222357	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
965	chr3	49864924	49864924	rs111488606	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (provided email address)	224,321 British ancestry cases, 147,096 British ancestry controls	NA	3p21.31	TRAIP	rs111488606-CA	0.44	2E-8		0.0065551	[0.0043-0.0089] unit decrease	NR [16367095] (imputed)	N
965	chr3	49865628	49865628	rs112908707	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3p21.31	TRAIP	rs112908707-?	NR	4E-10			[NR]	NR [NR] (imputed)	N
965	chr3	49866391	49866392	rs1128535	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3p21.31		rs1128535-?	NR	6E-16		0.0164131	[0.012-0.02] unit decrease	NR [6912294] (imputed)	N
965	chr3	49868803	49868804	rs7636294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.31	NR	rs7636294-C	NR	2E-9		0.023	[0.016-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
965	chr3	49868803	49868804	rs7636294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs7636294-C	NR	3E-13		0.0274	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
965	chr3	49868803	49868804	rs7636294	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.31	NR	rs7636294-C	NR	1E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
965	chr3	49873187	49873188	rs4519692	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.31		rs4519692-C	0.677761	3E-8		0.0233071	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
965	chr3	49873187	49873188	rs4519692	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.31		rs4519692-C	0.677761	4E-9		0.0243251	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
965	chr3	49877584	49877585	rs9858428	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.31	TRAIP	rs9858428-T	0.11	1E-208	(Thioredoxin domain-containing protein 12, TXNDC12.4815.25.3)	1.08	[1.02-1.14] unit increase	Affymetrix [10572788] (imputed)	N
965	chr3	49878112	49878113	rs2271961	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	3p21.31	TRAIP	rs2271961-C	0.4957	9E-8		0.0081	[0.0052-0.011] unit increase	Affymetrix [~ 7740000] (imputed)	N
965	chr3	49878651	49878652	rs1317140	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p21.31	NR	rs1317140-A	0.32	2E-15		0.0155	[0.012-0.019] unit increase	NR [NR]	N
965	chr3	49878651	49878652	rs1317140	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs1317140-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
965	chr3	49880398	49880399	rs34484573	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p21.31	TRAIP	rs34484573-G	NR	3E-10		0.0118321	[0.0082-0.0155] unit decrease	Affymetrix [10061374] (imputed)	N
965	chr3	49881133	49881134	rs2246832	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.31	RNF123	rs2246832-T		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
965	chr3	49884260	49884261	rs9819511	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.31		rs9819511-C	0.680179	1E-10		0.0276607	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
965	chr3	49884260	49884261	rs9819511	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	3p21.31	TRAIP	rs9819511-T	0.2962	2E-8		0.0137	[0.0094-0.018] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
965	chr3	49887277	49887277	rs200837337	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3p21.31	NR	rs200837337-?	NR	3E-8		0.0656	[0.042-0.089] unit increase	Illumina [at least 560000] (imputed)	N
965	chr3	49887363	49887364	rs573485512	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs573485512-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
965	chr3	49889918	49889919	rs62260729	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3p21.31	NR	rs62260729-C	0.32444700000000004	3E-10		0.0136548	[0.0095-0.0178] unit increase	Affymetrix [16583148] (imputed)	N
965	chr3	49889918	49889919	rs62260729	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	TRAIP	rs62260729-C	0.3231	4E-10		0.0135868015	[0.0093-0.0178] unit decrease	Affymetrix [up to 18485882] (imputed)	N
965	chr3	49890612	49890613	rs2352974	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs2352974-C	0.466203	6E-28		0.06997704	[0.057-0.082] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
965	chr3	49890612	49890613	rs2352974	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	3p21.31		rs2352974-?	NR	8E-19				NR [7857346] (imputed)	N
965	chr3	49890612	49890613	rs2352974	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	3p21.31	NR	rs2352974-T	0.4991	6E-18		0.0154	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
965	chr3	49890612	49890613	rs2352974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p21.31	Intergenic	rs2352974-T	0.4875	5E-29		0.0319	[0.026-0.038] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
965	chr3	49890612	49890613	rs2352974	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs2352974-T	NR	4E-29		11.209	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
965	chr3	49890966	49890967	rs59357103	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs59357103-A	NR	3E-8		5.567	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
965	chr3	49891001	49891002	rs10865959	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs10865959-C	NR	8E-14		7.466	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
965	chr3	49891001	49891002	rs10865959	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	TRAIP	rs10865959-C	NR	2E-11		0.02149765	[0.015-0.028] unit decrease	Affymetrix [NR]	N
965	chr3	49891884	49891885	rs2352975	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	up to 92,771 European ancestry males, up to 113,387 European ancestry females	NA	3p21.31	TRAIP	rs2352975-C	0.3	6E-10		0.025	[0.017-0.033] unit increase	Affymetrix, Illumina, Perlegen [2437193] (imputed)	N
965	chr3	49892895	49892896	rs10049413	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p21.31		rs10049413-G	NR	3E-17		0.0185	[0.014-0.023] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
965	chr3	49892895	49892896	rs10049413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p21.31		rs10049413-?	NR	1E-20				NR [~ 8900000] (imputed)	N
965	chr3	49895051	49895052	rs2280405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	C-reactive protein levels	341,805 European ancestry individuals, 6,006 African ancestry individuals, 7,316 South Asian ancestry individuals	NA	3p21.31	NR	rs2280405-C	NR	1E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
965	chr3	49895051	49895052	rs2280405	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	CAMKV	rs2280405-C	NR	8E-10		6.141	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
965	chr3	49895051	49895052	rs2280405	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	CAMKV	rs2280405-C	NR	6E-12		0.020577328	[0.015-0.026] unit increase	Affymetrix [NR]	N
965	chr3	49896617	49896618	rs6797500	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	CAMKV	rs6797500-A	0.082	3E-18		1.0577		Affymetrix [11880941] (imputed)	N
965	chr3	49897829	49897830	rs2681780	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p21.31	NR	rs2681780-C	0.48661	2E-23		0.0200158	[0.016-0.024] unit decrease	NR [NR]	N
965	chr3	49897999	49898000	rs2777888	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	48,408 European ancestry men		3p21.31	CAMKV, HYAL3, RBM6, RNF123, RBM5, MON1A, U73166.2, MST1R	rs2777888-A	0.507	2E-6		0.155	NR unit increase	Illumina [2400000] (imputed)	N
965	chr3	49897999	49898000	rs2777888	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women, 48,408 European ancestry men		3p21.31	CAMKV, HYAL3, RBM6, RNF123, RBM5, MON1A, U73166.2, MST1R	rs2777888-A	0.507	5E-15		0.106	NR unit increase	Illumina [2400000] (imputed)	N
965	chr3	49897999	49898000	rs2777888	27798627	Barban N	2016-10-31	Nat Genet	Genome-wide analysis identifies 12 loci influencing human reproductive behavior.	Age at first birth	189,656 European ancestry women		3p21.31	CAMKV, HYAL3, RBM6, RNF123, RBM5, MON1A, U73166.2, MST1R	rs2777888-A	0.507	6E-10		0.095	NR unit increase	Illumina [2400000] (imputed)	N
965	chr3	49898317	49898318	rs62260755	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3p21.31	CAMKV	rs62260755-?	NR	5E-9			[NR]	NR [NR] (imputed)	N
965	chr3	49898317	49898318	rs62260755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs62260755-G	0.216649	9E-25				Affymetrix, Illumina [24246363] (imputed)	N
965	chr3	49898317	49898318	rs62260755	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p21.31	NR	rs62260755-G	0.220657	2E-27		0.025003	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
965	chr3	49898317	49898318	rs62260755	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs62260755-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
965	chr3	49898317	49898318	rs62260755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p21.31		rs62260755-?	NR	1E-9				NR [~ 8900000] (imputed)	N
965	chr3	49899794	49899795	rs3796386	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p21.31	NR	rs3796386-?		3E-33		0.0261712	[0.022-0.03] unit decrease	Affymetrix [19400418] (imputed)	N
965	chr3	49901059	49901060	rs11130222	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs11130222-A	0.5765	1E-23		113.87008	z score increase	NR [6814003]	N
965	chr3	49901059	49901060	rs11130222	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs11130222-A	0.5853	4E-28		0.024812652	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
965	chr3	49901059	49901060	rs11130222	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	3p21.31	CAMKV	rs11130222-?	NR	4E-14		0.0324711	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
965	chr3	49907110	49907111	rs6446187	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	CAMKV	rs6446187-A	NR	6E-29		0.03425905	[0.028-0.04] unit decrease	Affymetrix [NR]	N
965	chr3	49908022	49908023	rs952594	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	CAMKV	rs952594-A	0.4367	1E-31		0.023967411	[0.02-0.028] unit decrease	Affymetrix [up to 18485882] (imputed)	N
965	chr3	49910656	49910657	rs1317571	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p21.31	ACTBP13	rs1317571-T	NR	1E-9		0.0232596	[0.016-0.031] unit increase	Affymetrix [321788] (imputed)	N
965	chr3	49911154	49911155	rs55692411	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	ACTBP13	rs55692411-A	NR	6E-26		0.03273728	[0.027-0.039] unit decrease	Affymetrix [NR]	N
965	chr3	49913704	49913705	rs36022378	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	ACTBP13	rs36022378-C	0.2056	3E-9		0.015006389	[0.01-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
965	chr3	49913704	49913705	rs36022378	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p21.31		rs36022378-?	NR	1E-9				NR [~ 8900000] (imputed)	N
965	chr3	49913704	49913705	rs36022378	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3p21.31	CAMKV, ACTBP13	rs36022378-T	0.8	5E-9		0.202	[0.14-0.26] unit decrease	Affymetrix [~ 9800000] (imputed)	N
965	chr3	49914396	49914397	rs11712056	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p21.31		rs11712056-?	NR	7E-12				NR [~ 8900000] (imputed)	N
965	chr3	49914396	49914397	rs11712056	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs11712056-T	0.5638	2E-26	(conditional-joint)	0.0169	[0.014-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
965	chr3	49914396	49914397	rs11712056	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	3p21.31	BSN, APEH, MST1, RNF123, AMIGO3, GMPPB, IP6K1, CDHR4, FAM212A, UBA7, MIR5193, TRAIP, CAMKV, MST1R, MON1A, RBM6, RBM5, LUST, SEMA3F	rs11712056-T	0.556397	6E-10		0.00595134	[0.0041-0.0078] unit increase	NR [NR] (imputed)	N
965	chr3	49914396	49914397	rs11712056	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (college completion)	280,007 European ancestry individuals	NA	3p21.31	NR	rs11712056-T	0.5717	2E-16		1.0500073	[NR]	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
965	chr3	49915505	49915506	rs9862795	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p21.31	NA	rs9862795-A	0.4762	4E-44		0.0264	[0.023-0.03] unit decrease	NR [~ 27400000] (imputed)	N
965	chr3	49915505	49915506	rs9862795	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p21.31	NA	rs9862795-A	0.4762	4E-44		0.0264	[0.023-0.03] unit decrease	NR [~ 27400000] (imputed)	N
965	chr3	49916043	49916044	rs9838987	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p21.31	CAMKV	rs9838987-A	0.5039	6E-33		0.1175	[0.098-0.137] unit increase	NR [9744772] (imputed)	N
965	chr3	49916709	49916710	rs7613360	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs7613360-C	0.383698	3E-14		0.055265676	[0.041-0.069] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
965	chr3	49916709	49916710	rs7613360	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs7613360-T	NR	7E-16		8.072	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
965	chr3	49916709	49916710	rs7613360	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p21.31	NR	rs7613360-?	NR	2E-8		0.01326	[0.0086-0.0179] unit increase	Affymetrix [10847151] (imputed)	N
965	chr3	49916709	49916710	rs7613360	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	ACTBP13	rs7613360-T	NR	7E-11		6.517	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
965	chr3	49916709	49916710	rs7613360	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	3p21.31	MST1	rs7613360-T	0.386537	2E-8		5.61	z score increase	NR [10847151] (imputed)	N
965	chr3	49917020	49917021	rs77719387	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs77719387-A	0.0174	4E-12		0.0403	[0.029-0.052] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
965	chr3	49920554	49920555	rs150399044	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs150399044-A	0.0335	3E-11	(MTAG)	0.0425	[0.03-0.055] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
965	chr3	49920570	49920571	rs9843653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3p21.31		rs9843653-C	0.51	1E-20		0.017	nmol/L decrease	NR [NR] (imputed)	N
965	chr3	49920570	49920571	rs9843653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p21.31		rs9843653-C	0.51	4E-29				NR [NR] (imputed)	N
965	chr3	49920570	49920571	rs9843653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3p21.31		rs9843653-C	0.51	1E-27		0.019	mmol/L decrease	NR [NR] (imputed)	N
965	chr3	49920570	49920571	rs9843653	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p21.31		rs9843653-C	0.51	4E-26		0.016	% increase	NR [NR] (imputed)	N
965	chr3	49920570	49920571	rs9843653	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.31	MST1R	rs9843653-T	0.488186	2E-37		0.0175503	[0.015-0.02] unit decrease	Affymetrix [12370749]	N
965	chr3	49920570	49920571	rs9843653	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.31		rs9843653-?	NR	3E-47				NR [~ 8900000] (imputed)	N
965	chr3	49920570	49920571	rs9843653	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p21.31	NR	rs9843653-?	NR	1E-9		0.13387	[0.091-0.177] unit increase	Affymetrix [7794483] (imputed)	N
965	chr3	49920570	49920571	rs9843653	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p21.31	NR	rs9843653-?	NR	1E-6	(male)	0.17044	[0.1-0.24] unit increase	Affymetrix [7794483] (imputed)	N
965	chr3	49924423	49924424	rs11713193	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	3p21.31	NR	rs11713193-A		2E-7				Illumina [458525]	N
965	chr3	49930101	49930102	rs34713786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p21.31		rs34713786-T	NR	2E-14		0.0197	[0.015-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
965	chr3	49931342	49931343	rs9815930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p21.31		rs9815930-T	NR	1E-16		0.0199	[0.015-0.025] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
965	chr3	49931342	49931343	rs9815930	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	3p21.31	NR	rs9815930-A	0.480513	4E-10		0.994	[0.993, 0.996]	Affymetrix [39302896] (imputed)	N
965	chr3	49931759	49931760	rs111226181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs111226181-T	0.1773	1E-27		0.0201	[0.017-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
965	chr3	49931759	49931760	rs111226181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs111226181-T	0.1773	1E-27	(MTAG)	0.0188	[0.015-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
965	chr3	49936101	49936102	rs2230590	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3p21.31	MST1R, MON1A, SEMA3F, HYAL3	rs2230590-C	0.49160000000000004	9E-26		0.019	[0.015-0.023] unit increase	Illumina [246328]	N
966	chr3	49941435	49941436	rs2280406	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p21.31		rs2280406-A	NR	1E-9		0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
966	chr3	49941435	49941436	rs2280406	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p21.31	MST1R	rs2280406-G	NR	6E-16		0.0101301	[0.0077-0.0126] unit increase	Affymetrix [10061374] (imputed)	N
966	chr3	49941435	49941436	rs2280406	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	3p21.31	CTD-2330K9.3	rs2280406-A	NR	3E-10		0.01274	[0.0088-0.0167] unit decrease	Affymetrix [18485882] (imputed)	N
966	chr3	49943755	49943756	rs2293018	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.31	NR	rs2293018-?	NR	4E-9		1.13553	[1.09-1.18]	Affymetrix, Illumina [12447948] (imputed)	N
966	chr3	49945861	49945862	rs140867372	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs140867372-G	NR	4E-11		0.2173	[0.15-0.28] SD units decrease	NR [10700000] (imputed)	N
966	chr3	49949833	49949834	rs7634084	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p21.31		rs7634084-T	NR	9E-40		0.0271	[0.023-0.031] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
966	chr3	49949833	49949834	rs7634084	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p21.31	LRRC2, TDGF1, PTH1R, CCDC12, NBEAL2, SETD2, KIF9, KLHL18, PTPN23, SCAP, ELP6, PFKFB4, CELSR3, IP6K2, ARIH2, QRICH1, USP4, RHOA, NICN1, DAG1, BSN, MST1, RNF123, IP6K1, CDHR4, UBA7, FAM212A, TRAIP, CAMKV, MST1R, MON1A, RBM6, RBM5, SEMA3F	rs7634084-?		4E-14				Affymetrix, Illumina [NR] (imputed)	N
966	chr3	49956035	49956036	rs142344547	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs142344547-A	0.062	1E-11	(MTAG)	0.0232	[0.017-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
966	chr3	49959570	49959571	rs371233900	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p21.31		rs371233900-C	NR	5E-33		0.025	[0.021-0.029] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
966	chr3	49960387	49960388	rs62262093	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p21.31	NR	rs62262093-T	0.4824	1E-33		0.02992574	[0.025-0.035] unit decrease	Affymetrix [10549349] (imputed)	N
966	chr3	49965608	49965609	rs35917071	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs35917071-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
966	chr3	49970126	49970127	rs150478785	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p21.31		rs150478785-?	NR	4E-8				NR [~ 8900000] (imputed)	N
966	chr3	49970309	49970310	rs62262097	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	MON1A	rs62262097-A	NR	3E-10		0.027602	[0.019-0.036] unit decrease	Affymetrix [321114] (imputed)	N
966	chr3	49970309	49970310	rs62262097	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p21.31	MON1A	rs62262097-A	0.120586	5E-13		0.025141114	[0.018-0.032] unit increase	Affymetrix [93095623] (imputed)	N
966	chr3	49970309	49970310	rs62262097	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	MON1A	rs62262097-A	0.1129	2E-8		0.017799895	[0.012-0.024] unit decrease	Affymetrix [up to 18485882] (imputed)	N
966	chr3	49970309	49970310	rs62262097	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	MON1A	rs62262097-A	NR	3E-8		0.02653357	[0.017-0.036] unit decrease	Affymetrix [NR]	N
966	chr3	49971513	49971514	rs7613875	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	3p21.31	RBM6, MON1A	rs7613875-A	NR	3E-8		1.0316918	[1.02-1.04]	Affymetrix, Illumina [up to 7600000] (imputed)	N
966	chr3	49971513	49971514	rs7613875	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p21.31	NR	rs7613875-C	NR	7E-14		0.02	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
966	chr3	49971513	49971514	rs7613875	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p21.31	MON1A, RBM6	rs7613875-A	0.52	4E-9		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
966	chr3	49971513	49971514	rs7613875	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p21.31	DAG1, BSN, IP6K1, RAIP, RBM6, SEMA3F, C3orf45, BSN-AS2, APEH, CDHR4, MST1R, RBM5, GNAT1, IFRD2, MST1, FAM212A, LUST, SLC38A3, HYAL2, RNF123, UBA7, GNAI2, NPRL2	rs7613875-A	0.528960866679462	1E-8		0.015881946	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
966	chr3	49971513	49971514	rs7613875	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p21.31	MON1A	rs7613875-A	0.531	5E-7		0.016	[0.0095-0.0217] kg/m2 increase	Affymetrix, Illumina [2550021]	N
966	chr3	49971513	49971514	rs7613875	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p21.31	MON1A	rs7613875-A	0.53	7E-7	(EA)	0.016	[0.0095-0.0221] kg/m2 increase	Affymetrix, Illumina [2550021]	N
966	chr3	49971513	49971514	rs7613875	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p21.31	MON1A	rs7613875-A	0.53	1E-6	(EA, men)	0.021	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
966	chr3	49980595	49980596	rs4688760	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p21.31	NR	rs4688760-C	0.326	1E-11		0.034	[0.024-0.044] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
966	chr3	49980595	49980596	rs4688760	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.31	RBM6	rs4688760-T	0.690062	2E-13		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
966	chr3	49980595	49980596	rs4688760	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.31	RBM6	rs4688760-T	0.690062	4E-12		1.03	[1.02-1.05]	Affymetrix [14661600] (imputed)	N
966	chr3	49980595	49980596	rs4688760	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p21.31	RBM6	rs4688760-T	0.6842	4E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
966	chr3	49993190	49993191	rs11130226	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	RBM6	rs11130226-T	NR	3E-13		7.287	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
966	chr3	49995517	49995518	rs6792892	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p21.31		rs6792892-C	NR	4E-28		0.0236	[0.019-0.028] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
966	chr3	49995517	49995518	rs6792892	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p21.31	NR	rs6792892-C	0.4822	1E-14		0.0306	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
966	chr3	50003322	50003323	rs12636669	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	RBM6	rs12636669-T	0.0801	5E-19		1.0596		Affymetrix [11880941] (imputed)	N
966	chr3	50003322	50003323	rs12636669	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p21.31	RBM6	rs12636669-T	0.0801	5E-19		1.0586559		Affymetrix [11880941] (imputed)	N
966	chr3	50008117	50008118	rs4688759	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.31	RBM6, RNF123, BSN, AMIGO3, GMPPB, IP6K1, RP13-1056D16.2, TRAIP, RN7SL217P, CAMKV, AC139451.2, ACTBP13, RBM5	rs4688759-C	0.1023069	2E-42	(Thioredoxin domain-containing protein 12)	0.9591	[0.83-1.09] unit increase	Affymetrix [509946]	N
966	chr3	50014495	50014496	rs11916261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.31	NR	rs11916261-A	NR	1E-20		0.0401	[0.032-0.049] unit increase	Affymetrix [9000000] (imputed)	N
966	chr3	50014495	50014496	rs11916261	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.31	NR	rs11916261-A	NR	3E-14		0.0344	[0.026-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
966	chr3	50022048	50022049	rs62262139	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	3p21.31	NR	rs62262139-A	0.54	9E-11		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
966	chr3	50022053	50022054	rs62262140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p21.31	RBM6	rs62262140-A	0.538109	1E-13		0.0175369	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
966	chr3	50022053	50022054	rs62262140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p21.31	RBM6	rs62262140-A	0.538083	5E-13		0.016243495	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
966	chr3	50024037	50024038	rs111439884	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p21.31	RBM6	rs111439884-A	0.5043	3E-16		0.0221	[0.017-0.027] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
966	chr3	50031839	50031840	rs35012435	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs35012435-T	NR	1E-11		6.76	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
966	chr3	50034636	50034637	rs1986599	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.31	RBM6	rs1986599-T	0.884603	2E-8	(448 ms)	0.0499449	[0.033-0.067] unit increase	Affymetrix [10000000] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	4E-7	(females)	0.01826	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	2E-12		0.0212	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	1E-6	(males)	0.02446	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	6E-6		0.01158	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	4E-9	(females)	0.02692	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50034636	50034637	rs1986599	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.31	RBM6	rs1986599-G	0.117827	2E-9		0.02323	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
966	chr3	50035014	50035015	rs571930760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p21.31	RBM6	rs571930760-C	3.34999999999974E-4	2E-10		0.5712905	[0.4-0.75] unit decrease	Affymetrix [93095623] (imputed)	N
966	chr3	50037202	50037202	rs796623870	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3p21.31		rs796623870-GA,rs796623870-GA	0.459414	4E-10		0.024156	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
966	chr3	50037202	50037202	rs796623870	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3p21.31		rs796623870-GA,rs796623870-GA	0.459414	4E-10		0.024156	[0.017-0.032] unit decrease	NR [11722792] (imputed)	N
966	chr3	50040193	50040194	rs4688756	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p21.31	RBM6	rs4688756-?	NR	2E-17		0.017151818	[0.013-0.021] unit decrease	NR [7306098]	N
966	chr3	50041312	50041313	rs6765484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.31	RBM6	rs6765484-C	0.527174	7E-32		0.0224418	[0.019-0.026] unit decrease	Affymetrix [NR] (imputed)	N
966	chr3	50041312	50041313	rs6765484	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p21.31	RBM6	rs6765484-C	0.527299	4E-25		0.0203492	[0.016-0.024] unit decrease	Affymetrix [NR] (imputed)	N
966	chr3	50052866	50052867	rs6800913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3p21.31		rs6800913-T	0.250902	1E-8		0.0268123	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
966	chr3	50052866	50052867	rs6800913	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.31		rs6800913-?	NR	8E-33		0.0285482	[0.024-0.033] unit increase	Affymetrix [20259828] (imputed)	N
966	chr3	50052872	50052873	rs6800916	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs6800916-A	0.0848	2E-8		0.024491152	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
966	chr3	50056264	50056265	rs2624818	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs2624818-A	0.105	9E-9		0.021383287	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
966	chr3	50058609	50058610	rs2526752	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.31	NR	rs2526752-T	NR	4E-9		0.031	[0.021-0.041] unit increase	Affymetrix [9000000] (imputed)	N
966	chr3	50067349	50067350	rs35849525	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RBM6	rs35849525-C	0.2735	2E-11		0.015527495	[0.011-0.02] unit decrease	Affymetrix [up to 18485882] (imputed)	N
966	chr3	50067349	50067350	rs35849525	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	RBM6	rs35849525-T	NR	1E-16		0.029065153	[0.022-0.036] unit increase	Affymetrix [NR]	N
967	chr3	50070842	50070843	rs138014720	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NR	rs138014720-A	0.9406	3E-8		1.072	[1.05-1.1]	Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50075493	50075494	rs112634398	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs112634398-A	0.0367793	2E-10		0.118084	[0.082-0.155] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
967	chr3	50075493	50075494	rs112634398	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RBM6	rs112634398-G	0.02636	2E-8		0.02719169	[0.018-0.037] unit decrease	Affymetrix [up to 18485882] (imputed)	N
967	chr3	50075493	50075494	rs112634398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs112634398-A	0.9514	1E-10	(conditional-joint)	0.0223	[0.015-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
967	chr3	50075493	50075494	rs112634398	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs112634398-A	0.9491	3E-12		0.038380705	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
967	chr3	50085152	50085153	rs17304079	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs17304079-A	0.7351	1E-32	(MTAG)	0.0309	[0.026-0.036] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
967	chr3	50086304	50086305	rs540281247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	RBM6	rs540281247-T	4.06000000000017E-4	2E-15		0.46755114	[0.35-0.58] unit increase	Affymetrix [93095623] (imputed)	N
967	chr3	50091941	50091942	rs184156467	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		RBM6	rs184156467-?	NR	2E-10	(male)	2.64399	[NR] unit decrease	Affymetrix [NR] (imputed)	N
967	chr3	50093208	50093209	rs6762477	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3p21.31	WDR6, UBA7	rs6762477-G	0.44	8E-12		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
967	chr3	50093208	50093209	rs6762477	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3p21.31	RBM6	rs6762477-G	0.44	2E-8		2.5	[1.72-3.28] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
967	chr3	50112055	50112056	rs149787889	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs149787889-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
967	chr3	50112055	50112056	rs149787889	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p21.31	RBM6	rs149787889-A	0.0222	8E-7		0.1138	[0.069-0.159] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
967	chr3	50113003	50113004	rs2240328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3p21.31		rs2240328-C	NR	3E-9		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
967	chr3	50113003	50113004	rs2240328	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p21.31	NR	rs2240328-T	0.17	2E-8		0.014	[0.0093-0.0187] unit increase	Affymetrix [2446094] (imputed)	N
967	chr3	50113003	50113004	rs2240328	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p21.31	NR	rs2240328-T	0.17	5E-8				Affymetrix [2446094] (imputed)	N
967	chr3	50117311	50117312	rs2624816	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	RBM6	rs2624816-T	NR	1E-25		0.032145794	[0.026-0.038] unit decrease	Affymetrix [NR]	N
967	chr3	50117519	50117520	rs2624817	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3p21.31	RBM6, RBM5	rs2624817-A	0.17	7E-9		5.8	z-score increase	Affymetrix [4312306] (imputed)	N
967	chr3	50119387	50119387	rs537069642	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	3p21.31	RBM6	rs537069642-CTT	0.423828	1E-9		0.0418519	[0.028-0.055] unit decrease	Affymetrix [9463307] (imputed)	N
967	chr3	50119388	50119388	rs34234656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p21.31	RBM6	rs34234656-CTT	0.425953	6E-12		0.016350063	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3p21.31	RBM5	rs2013208-T	NR	3E-17				Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3p21.31	RBM5	rs2013208-T	NR	3E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3p21.31	RBM5	rs2013208-T	NR	5E-17				Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3p21.31	RBM5	rs2013208-T	NR	4E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3p21.31	RBM5	rs2013208-T	NR	5E-10		0.005	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	3p21.31	RBM5	rs2013208-T	NR	3E-9		0.006516	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50129398	50129399	rs2013208	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	HDL cholesterol x physical activity interaction (2df test)	7,395 African American inactive individuals, 13,092 African American active individuals, 2,753 Asian ancestry inactive individuals, 3,650 Asian ancestry active individuals, 22,963 European ancestry inactive individuals, 61,939 European ancestry active individuals, 2,829 Hispanic or Latin American inactive individuals, 6,358 Hispanic or Latin American active individuals	1,886 African American inactive individuals, 1,892 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 2,494 East Asian ancestry inactive individuals, 1,947 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,425 South Asian ancestry active individuals, 41,042 European ancestry inactive individuals, 66,575 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,802 Hispanic active individuals	3p21.31	NR	rs2013208-T	0.532	1E-10				Affymetrix, Illumina [at least 2500000] (imputed)	N
967	chr3	50129398	50129399	rs2013208	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs2013208-T	NR	1E-22		9.775	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
967	chr3	50129398	50129399	rs2013208	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3p21.31	RBM5	rs2013208-T	0.505	1E-12	(Trans-ethnic initial)	0.0254	[0.018-0.032] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
967	chr3	50129398	50129399	rs2013208	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.31	RBM5	rs2013208-T	0.5	9E-12		0.025	[NR] unit increase	NR [NR] (imputed)	N
967	chr3	50131690	50131691	rs62263597	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p21.31		rs62263597-A	0.08451	5E-13		0.028	[0.02-0.036] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
967	chr3	50132130	50132131	rs2624834	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p21.31	RBM5	rs2624834-G	0.186077	3E-13		0.0175388	[0.013-0.022] unit increase	NR [13737936] (imputed)	N
967	chr3	50153355	50153356	rs1138536	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.31		rs1138536-T	0.4366	2E-19		94.14867	z score increase	NR [6814003]	N
967	chr3	50154988	50154989	rs2624825	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs2624825-G	0.479125	6E-24		0.06411052	[0.052-0.077] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
967	chr3	50159678	50159679	rs2071208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.31	NR	rs2071208-A	NR	8E-18		0.0279	[0.022-0.034] unit increase	Affymetrix [9000000] (imputed)	N
967	chr3	50159678	50159679	rs2071208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs2071208-A	NR	4E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
967	chr3	50159678	50159679	rs2071208	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.31	NR	rs2071208-A	NR	2E-17		0.0277	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
967	chr3	50159843	50159844	rs2071207	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	3p21.31	SEMA3F-AS1	rs2071207-T	0.522	1E-8		0.0187	[0.012-0.025] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
967	chr3	50160108	50160109	rs2071206	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.31		rs2071206-?	NR	2E-18				NR [~ 8900000] (imputed)	N
967	chr3	50163407	50163408	rs115192074	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs115192074-G	NR	3E-12		0.2359	[0.17-0.3] SD units decrease	NR [10700000] (imputed)	N
967	chr3	50165562	50165563	rs62260771	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	RBM5, SEMA3F	rs62260771-C	0.0821	7E-19		1.0585		Affymetrix [11880941] (imputed)	N
967	chr3	50169714	50169715	rs4688686	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p21.31	RP11-493K19.3	rs4688686-T	NR	5E-11		0.0192687	[0.014-0.025] unit increase	Affymetrix [321788] (imputed)	N
967	chr3	50172396	50172397	rs2014830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p21.31	RP11-493K19.3	rs2014830-T	NR	8E-11		0.0208274	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
967	chr3	50172396	50172397	rs2014830	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p21.31	RP11-493K19.3	rs2014830-T	NR	4E-8		0.0169548	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
967	chr3	50172396	50172397	rs2014830	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p21.31	CRB1, DENND1B	rs2014830-?		5E-12				NR [7428630] (imputed)	N
967	chr3	50172396	50172397	rs2014830	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration (short sleep)	106,192  European ancestry cases, 305,742 European ancestry controls	47,180  adults, 10,554 children or adolescents	3p21.31	AMT, APEH, RHOA, DAG1, GNAI2, GNAT1, GPX1, HYAL1, MST1, MST1R, SEMA3F, TCTA, IFRD2, SEMA3B, BSN, CACNA2D2, IP6K1, RBM6, RBM5, TRAIP, NPRL2, SLC38A3, CYB561D2, TMEM115, RASSF1, TUSC2, NAT6, GMPPB, ZMYND10, RNF123, CAMKV, NICN1, MON1A, LSMEM2, ACTBP13, UBA7, USP4, HYAL3, HYAL2, AMIGO3, FAM212A	rs2014830-C	NR	3E-8		1.03		NR [14661600] (imputed)	N
967	chr3	50172396	50172397	rs2014830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs2014830-T	0.3139	5E-13		0.011	[0.0081-0.0139] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
967	chr3	50174183	50174184	rs7428430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (opioids)	22,982 European ancestry cases, 55,826 European ancestry controls, 3,566 East Asian ancestry cases, 175,160 East Asian ancestry controls	NA	3p21.31		rs7428430-T	NR	3E-9		0.0605	[0.041-0.08] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
967	chr3	50174183	50174184	rs7428430	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	3p21.31		rs7428430-T	NR	1E-10		0.055	[0.038-0.072] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
967	chr3	50174183	50174184	rs7428430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p21.31	RP11-493K19.3	rs7428430-T	NR	3E-9		0.0166222	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
967	chr3	50174183	50174184	rs7428430	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (opioids)	22,982 European ancestry cases, 55,826 European ancestry controls	NA	3p21.31	RP11-493K19.3	rs7428430-T	0.482569	1E-9		0.06519141	[0.044-0.086] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr3	50174183	50174184	rs7428430	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3p21.31	RP11-493K19.3	rs7428430-T	0.485019	2E-9		0.053877503	[0.036-0.072] unit decrease	Affymetrix [7288503] (imputed)	N
967	chr3	50174183	50174184	rs7428430	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	3p21.31		rs7428430-?	NR	1E-8				NR [~ 8900000] (imputed)	N
967	chr3	50174196	50174197	rs2624847	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3p21.31		rs2624847-T	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
967	chr3	50174196	50174197	rs2624847	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	3p21.31		rs2624847-?	NR	7E-8				NR [~ 8900000] (imputed)	N
967	chr3	50174196	50174197	rs2624847	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.31		rs2624847-?	NR	3E-31		0.026472	[0.022-0.031] unit increase	Affymetrix [20259828] (imputed)	N
967	chr3	50174196	50174197	rs2624847	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p21.31	SEMA3F-AS1	rs2624847-G	0.259157	2E-11		0.0243939	[0.017-0.032] unit increase	NR [17166351] (imputed)	N
967	chr3	50174196	50174197	rs2624847	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p21.31	SEMA3F-AS1	rs2624847-G	0.258535	1E-6	(women)	0.0255496	[0.015-0.036] unit increase	NR [17166351] (imputed)	N
967	chr3	50174571	50174572	rs13100903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p21.31		rs13100903-T	NR	8E-11		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
967	chr3	50174571	50174572	rs13100903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs13100903-C	0.647274	4E-10				Affymetrix, Illumina [17210439] (imputed)	N
967	chr3	50174571	50174572	rs13100903	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p21.31	NR	rs13100903-C	0.645025	2E-12		0.014032	[0.01-0.018] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
967	chr3	50174571	50174572	rs13100903	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p21.31	SEMA3F	rs13100903-T	0.346	6E-10		0.0077	[0.0053-0.0101] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
967	chr3	50174571	50174572	rs13100903	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs13100903-T	NR	5E-18		8.651	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
967	chr3	50174571	50174572	rs13100903	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	RP11-493K19.3	rs13100903-T	NR	1E-15		0.024482608	[0.018-0.03] unit decrease	Affymetrix [NR]	N
967	chr3	50174843	50174844	rs71326918	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RP11-493K19.3	rs71326918-A	0.1044	1E-8		0.018328328	[0.012-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
967	chr3	50174843	50174844	rs71326918	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs71326918-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
967	chr3	50174843	50174844	rs71326918	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.31	NR	rs71326918-A	0.1033	1E-8		0.02209247	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
967	chr3	50174885	50174886	rs2526388	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	RP11-493K19.3	rs2526388-C	0.2786	1E-13		0.016969513	[0.012-0.021] unit increase	Affymetrix [up to 18485882] (imputed)	N
967	chr3	50174885	50174886	rs2526388	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	RP11-493K19.3	rs2526388-T	NR	1E-8		0.0192318	[0.013-0.026] unit decrease	Affymetrix [NR]	N
967	chr3	50175939	50175940	rs2014004	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p21.31	RP11-493K19.3	rs2014004-?	NR	4E-13		7.241	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
967	chr3	50176588	50176589	rs2003485	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	RP11-493K19.3	rs2003485-T	NR	6E-13		0.023301834	[0.017-0.03] unit decrease	Affymetrix [NR]	N
967	chr3	50181134	50181135	rs2526385	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3p21.31	SEMA3F	rs2526385-T	0.2	2E-7				Affymetrix, Illumina [8002429] (imputed)	N
967	chr3	50181134	50181135	rs2526385	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	3p21.31	SEMA3F	rs2526385-T	0.2	8E-8		1.12	NR	Affymetrix [at least 8002429] (imputed)	N
967	chr3	50181134	50181135	rs2526385	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3p21.31	SEMA3F-AS1	rs2526385-T	0.193	3E-9		0.096	[0.065-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
967	chr3	50181134	50181135	rs2526385	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p21.31	SEMA3F-AS1	rs2526385-T	0.1932	5E-8		0.0976	[0.063-0.132] unit increase	Affymetrix [~ 11900000] (imputed)	N
967	chr3	50181135	50181136	rs2526384	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.31		rs2526384-C	0.656	8E-23		0.013	[0.011-0.015] unit decrease	NR [NR] (imputed)	N
967	chr3	50185507	50185508	rs11714286	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p21.31		rs11714286-A	0.5372	9E-11		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
967	chr3	50187079	50187080	rs2526399	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.31	RP11-493K19.3	rs2526399-T	NR	3E-8		0.0443872	[0.029-0.06] unit increase	Affymetrix [319769] (imputed)	N
967	chr3	50187079	50187080	rs2526399	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs2526399-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
967	chr3	50187079	50187080	rs2526399	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs2526399-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
967	chr3	50187595	50187596	rs2526398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.31	Intergenic	rs2526398-C	0.3532	5E-24	(MTAG)	0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
967	chr3	50187595	50187596	rs2526398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs2526398-C	0.3534	6E-47	(MTAG)	0.0248	[0.021-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
967	chr3	50187595	50187596	rs2526398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p21.31	Intergenic	rs2526398-G	0.6466	2E-20		0.0219	[0.017-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
967	chr3	50187595	50187596	rs2526398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs2526398-C	0.3468	2E-51		0.0222	[0.019-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
967	chr3	50187595	50187596	rs2526398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs2526398-C	0.3468	1E-59	(MTAG)	0.0224	[0.02-0.025] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
967	chr3	50187789	50187790	rs2526397	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p21.31		rs2526397-?	NR	7E-6		0.950002	[0.93-0.97]	NR [685523]	N
967	chr3	50189530	50189531	rs73080977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs73080977-T	NR	9E-14		0.0328	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
967	chr3	50189530	50189531	rs73080977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs73080977-T	NR	1E-12		0.0304	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
967	chr3	50189530	50189531	rs73080977	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.31	NR	rs73080977-T	NR	1E-12		0.0305	[0.022-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
967	chr3	50192759	50192760	rs2526390	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	3p21.31	NR	rs2526390-T	0.340332	3E-8		0.0579193	[0.038-0.078] unit increase	Affymetrix [21375087] (imputed)	N
967	chr3	50192759	50192760	rs2526390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p21.31	NR	rs2526390-T	0.334	3E-18		0.0100031	[0.0078-0.0123] unit increase	NR [9732723] (imputed)	N
967	chr3	50192759	50192760	rs2526390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p21.31	NR	rs2526390-T	0.334	4E-14		0.020466294	[0.015-0.026] unit increase	NR [~ 10000000] (imputed)	N
967	chr3	50196417	50196418	rs2624842	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p21.31	SEMA3F	rs2624842-A	0.870483	6E-9		0.0193107	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr3	50197096	50197097	rs1046953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs1046953-?	NR	2E-37				Affymetrix [~ 8270000] (imputed)	N
967	chr3	50197096	50197097	rs1046953	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p21.31	NA	rs1046953-T	0.4162	9E-38		0.0248	[0.021-0.029] unit decrease	NR [~ 27400000] (imputed)	N
967	chr3	50197096	50197097	rs1046953	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	SEMA3F	rs1046953-T	NR	3E-9		5.922	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
967	chr3	50198135	50198136	rs576886612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	SEMA3F	rs576886612-T	5.42000000000042E-4	7E-14		0.41931504	[0.31-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr3	50198135	50198136	rs576886612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	SEMA3F	rs576886612-T	5.42000000000042E-4	5E-14		0.4217553	[0.31-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr3	50198135	50198136	rs576886612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	SEMA3F	rs576886612-T	5.4299999999996E-4	1E-15		0.44550452	[0.34-0.55] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr3	50198135	50198136	rs576886612	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	SEMA3F	rs576886612-T	5.4299999999996E-4	2E-16		0.45880726	[0.35-0.57] unit decrease	Affymetrix [93095623] (imputed)	N
967	chr3	50198536	50198537	rs12631337	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	3p21.31	NR	rs12631337-A	0.45	2E-10		1.03		NR [8546065] (imputed)	N
967	chr3	50199329	50199330	rs35124980	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	SEMA3F	rs35124980-A	0.06854	3E-8		0.021994779	[0.014-0.03] unit increase	Affymetrix [up to 18485882] (imputed)	N
967	chr3	50199746	50199747	rs11710277	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			SEMA3F	rs11710277-G	0.0776	2E-14		0.116543	[0.087-0.146] unit decrease	Affymetrix [8165723] (imputed)	N
967	chr3	50199746	50199747	rs11710277	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA		SEMA3F	rs11710277-A	0.923	5E-7		0.12	[0.073-0.167] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
968	chr3	50201923	50201924	rs2188151	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p21.31	SEMA3F	rs2188151-G	0.574522	2E-24		0.0209994	[0.017-0.025] unit increase	NR [16516521] (imputed)	N
968	chr3	50201923	50201924	rs2188151	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	SEMA3F	rs2188151-T	NR	1E-14		0.022884054	[0.017-0.029] unit decrease	Affymetrix [NR]	N
968	chr3	50201923	50201924	rs2188151	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p21.31	SEMA3F	rs2188151-G	0.57178	3E-11		0.0257153	[0.018-0.033] unit increase	Affymetrix [641018] (imputed)	N
968	chr3	50201923	50201924	rs2188151	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first birth	66,310 British ancestry females	117,626 European ancestry males, 144,471 European ancestry females	3p21.31	RBM6, SEMA3F	rs2188151-T	0.43	9E-15		0.0132	[-0.02012-0.04652] unit decrease	Affymetrix [641018] (imputed)	N
968	chr3	50201923	50201924	rs2188151	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first birth	66,310 British ancestry females	117,626 European ancestry males, 144,471 European ancestry females	3p21.31	RBM6, SEMA3F	rs2188151-T	0.43	1E-12	(females)	0.129	[0.094-0.164] unit decrease	Affymetrix [641018] (imputed)	N
968	chr3	50202230	50202231	rs2624839	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs2624839-T	NR	6E-17		8.365	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
968	chr3	50202230	50202231	rs2624839	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	SEMA3F	rs2624839-T	NR	7E-9		5.801	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
968	chr3	50202230	50202231	rs2624839	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	SEMA3F	rs2624839-T	NR	6E-15		0.023023382	[0.017-0.029] unit increase	Affymetrix [NR]	N
968	chr3	50204744	50204745	rs3774745	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	SEMA3F	rs3774745-T	0.4545	1E-19		0.018403875	[0.014-0.022] unit increase	Affymetrix [up to 18485882] (imputed)	N
968	chr3	50207226	50207227	rs3774749	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	SEMA3F	rs3774749-T	NR	2E-22		0.029965477	[0.024-0.036] unit increase	Affymetrix [NR]	N
968	chr3	50209052	50209053	rs3774751	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NR	rs3774751-G	0.5379	7E-12		1.0416667	[1.03-1.05]	Affymetrix, Illumina [NR] (imputed)	N
968	chr3	50209052	50209053	rs3774751	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p21.31	NA	rs3774751-G	0.5375	1E-10	(Female)	1.049318	[1.04-1.06]	Affymetrix, Illumina [NR] (imputed)	N
968	chr3	50210288	50210289	rs1005678	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	3p21.31	NR	rs1005678-C		4E-6				Illumina [458525]	N
968	chr3	50216420	50216421	rs13059311	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.31	NR	rs13059311-T	0.326044	2E-10		0.04770675	[0.033-0.062] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
968	chr3	50217557	50217558	rs9832454	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	SEMA3F	rs9832454-T	NR	2E-9		0.032581236	[0.022-0.043] unit increase	Affymetrix [NR]	N
968	chr3	50218878	50218879	rs9858297	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p21.31	SEMA3F	rs9858297-C	0.3442	6E-9		0.01242226	[0.0082-0.0166] unit increase	Affymetrix [up to 18485882] (imputed)	N
968	chr3	50221714	50221715	rs13067082	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3p21.31	SEMA3F	rs13067082-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
968	chr3	50222925	50222926	rs1046956	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p21.31	NR	rs1046956-T	NR	2E-8		0.017	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
968	chr3	50224224	50224225	rs12632110	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p21.31	SEMA3F	rs12632110-A		1E-10		1.024	[NR]	Affymetrix [up to 79000000] (imputed)	N
968	chr3	50227870	50227871	rs9858059	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs9858059-T	NR	2E-11		6.707	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
968	chr3	50228315	50228316	rs11716820	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	GNAT1	rs11716820-T	NR	3E-8		5.518	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
968	chr3	50237544	50237545	rs9882618	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.31	GNAT1	rs9882618-T	NR	2E-6		1.097	[1.06-1.14]	Illumina [6627481] (imputed)	N
968	chr3	50237544	50237545	rs9882618	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p21.31	intergenic	rs9882618-T	NR	1E-6		1.095	[1.06-1.13]	Affymetrix, Illumina [up to 5107227] (imputed)	N
968	chr3	50239802	50239803	rs57462170	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.31	APEH	rs57462170-A	0.107943	2E-9		6.028	unit increase	NR [10847151] (imputed)	N
968	chr3	50240376	50240377	rs141150840	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p21.31	SLC38A3	rs141150840-A	NR	1E-12		0.0752124	[0.055-0.096] unit increase	Affymetrix [323123] (imputed)	N
968	chr3	50241934	50241935	rs184962666	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	SLC38A3	rs184962666-A	7.6200000000004E-4	2E-9		0.24826872	[0.17-0.33] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50242801	50242802	rs34370846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	SLC38A3	rs34370846-T	0.332329	7E-9		0.016719192	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50242801	50242802	rs34370846	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	SLC38A3	rs34370846-T	0.332319	3E-12		0.020650733	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50243509	50243510	rs2236939	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.31	NR	rs2236939-T	NR	2E-11		0.02592	[0.018-0.033] unit increase	Affymetrix [10847151] (imputed)	N
968	chr3	50247823	50247824	rs2236941	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p21.31	SLC38A3	rs2236941-T	0.3344	8E-9		0.0122805	[0.0081-0.0165] unit increase	Affymetrix [11514654] (imputed)	N
968	chr3	50250746	50250747	rs74461473	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.31		rs74461473-?	NR	7E-9				NR [~ 8900000] (imputed)	N
968	chr3	50250746	50250747	rs74461473	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	3p21.31	SLC38A3	rs74461473-?	NR	4E-7		1.2547698	[1.15-1.37]	Illumina [at least 4756722] (imputed)	N
968	chr3	50254188	50254188	rs145755097	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	3p21.31	GNAI2, RBM5	rs145755097-C	0.852979	1E-8		0.01849	[0.012-0.025] unit decrease	Affymetrix [19400838] (imputed)	N
968	chr3	50255662	50255663	rs35926495	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p21.31	GNAI2	rs35926495-C	0.623257	4E-10		0.00907724	[0.0062-0.0119] unit decrease	Affymetrix [12370749]	N
968	chr3	50274277	50274278	rs62260798	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	GNAI2	rs62260798-T	0.0813	2E-16		1.0527		Affymetrix [11880941] (imputed)	N
968	chr3	50279696	50279697	rs114670061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p21.31	GNAI2	rs114670061-T	0.00797400000000004	1E-12		0.089583695	[0.065-0.114] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50285632	50285633	rs114032302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p21.31	GNAI2	rs114032302-T	0.00796200000000003	7E-10		0.07752232	[0.053-0.102] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50286952	50286953	rs2298952	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p21.31	Intergenic	rs2298952-A	0.8973	2E-9		0.0283	[0.019-0.038] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
968	chr3	50290754	50290755	rs71583822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs71583822-?	NR	3E-13				NR [~ 8900000] (imputed)	N
968	chr3	50290901	50290902	rs2097247	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	3p21.31	APEH	rs2097247-T	0.0958248	3E-9		5.94	z score increase	NR [10847151] (imputed)	N
968	chr3	50293391	50293392	rs181394846	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs181394846-C	NR	5E-10		0.2059	[0.14-0.27] SD units decrease	NR [10700000] (imputed)	N
968	chr3	50301583	50301584	rs9839427	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p21.31		rs9839427-?	NR	1E-7				NR [~ 8900000] (imputed)	N
968	chr3	50308039	50308040	rs55689339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	SEMA3B	rs55689339-G	NR	6E-9		0.0349083	[0.023-0.047] unit decrease	Affymetrix [321114] (imputed)	N
968	chr3	50310286	50310286	rs375252497	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obese vs. thin	1,456 British ancestry obese children, 1,471 European ancestry thin adults	up to 7,526 British ancestry obese individuals, 7,962 obese individuals, up to 3,532 British ancestry thin individuals, 8,106 thin individuals	3p21.31	SEMA3B	rs375252497-AAATAATAATAAT	0.317822	1E-6		1.22	[1.13-1.32]	Illumina [41266535] (imputed)	N
968	chr3	50313526	50313527	rs762705	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.31	NR	rs762705-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
968	chr3	50313526	50313527	rs762705	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs762705-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
968	chr3	50313526	50313527	rs762705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.31		rs762705-?	NR	1E-12				NR [~ 8900000] (imputed)	N
968	chr3	50313526	50313527	rs762705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.31		rs762705-?	NR	1E-7				NR [~ 8900000] (imputed)	N
968	chr3	50316118	50316119	rs6776145	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals		NR	rs6776145-C	0.120796384876891	5E-11		0.009263507	[0.0065-0.012] unit increase	NR [NR]	N
968	chr3	50316118	50316119	rs6776145	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA		NR	rs6776145-C	0.120796384876891	1E-10		0.011308543	[0.0079-0.0147] unit increase	NR [NR]	N
968	chr3	50316118	50316119	rs6776145	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals		NR	rs6776145-C	0.120796384876891	5E-11		0.014766218	[0.01-0.019] unit increase	NR [NR]	N
968	chr3	50316118	50316119	rs6776145	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA		NR	rs6776145-C	0.120796384876891	2E-10		0.012023064	[0.0083-0.0157] unit increase	NR [NR]	N
968	chr3	50316118	50316119	rs6776145	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals		NR	rs6776145-C	0.120796384876891	5E-11		0.009422321	[0.0066-0.0122] unit increase	NR [NR]	N
968	chr3	50316118	50316119	rs6776145	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA		NR	rs6776145-T	NR	2E-8		5.635	z score decrease	Affymetrix [10847151] (imputed)	N
968	chr3	50326253	50326254	rs200622087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	IFRD2	rs200622087-A	7.03000000000009E-4	4E-30		0.48125616	[0.4-0.56] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50326253	50326254	rs200622087	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs200622087-A	7.07000000000013E-4	9E-45		0.5865906	[0.5-0.67] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50326728	50326729	rs200964278	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Reticulocyte count	437,291 European ancestry individuals	NA	3p21.31		rs200964278-?	NR	2E-25		0.479437	[0.39-0.57] unit increase	NR [9800000] (imputed)	N
968	chr3	50326728	50326729	rs200964278	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Immature fraction of reticulocytes	438,154 European ancestry individuals	NA	3p21.31		rs200964278-?	NR	2E-32		0.586337	[0.49-0.68] unit increase	NR [9800000] (imputed)	N
968	chr3	50326728	50326729	rs200964278	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	High light scatter reticulocyte count	437,723 European ancestry individuals	NA	3p21.31		rs200964278-?	NR	8E-42		0.627668	[0.54-0.72] unit increase	NR [9800000] (imputed)	N
968	chr3	50326728	50326729	rs200964278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs200964278-T	5.22000000000022E-4	6E-18		0.44738317	[0.35-0.55] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50326728	50326729	rs200964278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs200964278-T	5.22000000000022E-4	7E-17		0.4333486	[0.33-0.54] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50326728	50326729	rs200964278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs200964278-T	5.19999999999965E-4	5E-24		0.5222423	[0.42-0.62] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50326728	50326729	rs200964278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs200964278-T	5.19999999999965E-4	1E-23		0.51931226	[0.42-0.62] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50328059	50328060	rs201335410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs201335410-A	0.00137900000000002	4E-16		0.26618204	[0.2-0.33] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50328059	50328060	rs201335410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs201335410-A	0.00138000000000005	9E-16		0.26248702	[0.2-0.33] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50328059	50328060	rs201335410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	IFRD2	rs201335410-A	0.00137900000000002	4E-17		0.27482608	[0.21-0.34] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50328059	50328060	rs201335410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs201335410-A	0.00138000000000005	1E-19		0.294315	[0.23-0.36] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50328059	50328060	rs201335410	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs201335410-A	0.00138000000000005	3E-20		0.2995363	[0.24-0.36] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684149	3E-191		0.087263554	[0.081-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684154	5E-209		0.07777934	[0.073-0.083] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684099	1E-56		0.038306184	[0.034-0.043] unit increase	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684136	1E-244		0.08286424	[0.078-0.088] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684035	7E-214		0.098165035	[0.092-0.104] unit decrease	Affymetrix [93095623] (imputed)	N
968	chr3	50329825	50329826	rs1076872	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	IFRD2	rs1076872-G	0.684043	3E-228		0.08826602	[0.083-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr3	50332696	50332697	rs13100173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3p21.31	HYAL3	rs13100173-A	0.47898	1E-9		0.013527442	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr3	50332696	50332697	rs13100173	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3p21.31	NR	rs13100173-A	0.479068	2E-10		0.01338	[0.0093-0.0175] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
969	chr3	50337031	50337032	rs34136796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.31		rs34136796-?	NR	7E-15				NR [~ 8900000] (imputed)	N
969	chr3	50341479	50341480	rs62260803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs62260803-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
969	chr3	50349131	50349132	rs188810024	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p21.31	NR	rs188810024-?	NR	4E-8				Illumina [7760689] (imputed)	N
969	chr3	50350375	50350376	rs374528934	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.31	NR	rs374528934-?	NR	4E-11		1.130544	[1.09-1.17]	Affymetrix, Illumina [12447948] (imputed)	N
969	chr3	50352199	50352200	rs11130248	20711176	Nakashima M	2010-08-15	Nat Genet	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	3p21.31	NR	rs11130248-?	0.52	5E-7		1.34	[1.19-1.49]	Illumina [452038]	N
969	chr3	50366286	50366287	rs112831634	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p21.31	NR	rs112831634-G	0.01916	2E-8	(UCHL3)	0.01418	NR unit decrease	Illumina [1671387] (imputed)	N
969	chr3	50369545	50369546	rs2073498	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.31	NR	rs2073498-A	0.110814	6E-9		5.813	unit increase	NR [10847151] (imputed)	N
969	chr3	50371431	50371432	rs2236947	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	SSC-A on granulocyte	3,112 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.31		rs2236947-A	0.61736	2E-10		0.1811	[0.13-0.24] unit increase	Illumina [18030748] (imputed)	N
969	chr3	50371431	50371432	rs2236947	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3p21.31	RASSF1	rs2236947-A	0.479167	3E-11		0.014740114	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
969	chr3	50374292	50374293	rs2073499	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	3p21.31	NR	rs2073499-?	NR	1E-13		1.1111112		Affymetrix, Illumina [9938587] (imputed)	N
969	chr3	50374292	50374293	rs2073499	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.31	RASSF1	rs2073499-G	NR	3E-8	(East Asian)	1.098901	[1.07-1.13]	Illumina [6627481] (imputed)	N
969	chr3	50374292	50374293	rs2073499	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p21.31	HYAL3, RASSF1	rs2073499-A	NR	3E-8	(Chinese)	1.112347	[1.08-1.15]	Affymetrix, Illumina [up to 5107227] (imputed)	N
969	chr3	50374567	50374568	rs57838764	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	3p21.31	NR	rs57838764-C	0.1142	3E-8		0.01062	[0.0069-0.0144] unit increase	NR [8968716] (imputed)	N
969	chr3	50376473	50376474	rs193141147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.31	RASSF1	rs193141147-T	7.51999999999975E-4	4E-39		0.6090282	[0.52-0.7] unit increase	Affymetrix [93095623] (imputed)	N
969	chr3	50376473	50376474	rs193141147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.31	RASSF1	rs193141147-T	7.50999999999946E-4	1E-42		0.63780487	[0.55-0.73] unit increase	Affymetrix [93095623] (imputed)	N
969	chr3	50376473	50376474	rs193141147	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.31	RASSF1	rs193141147-T	7.54000000000032E-4	2E-48		0.6758593	[0.59-0.77] unit increase	Affymetrix [93095623] (imputed)	N
969	chr3	50378801	50378802	rs78166579	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs78166579-T	0.0391	1E-8	(MTAG)	0.0246	[0.016-0.033] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
969	chr3	50384350	50384351	rs587668346	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.31	NR	rs587668346-T	0.00806717	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
969	chr3	50399644	50399645	rs183139656	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs183139656-C	NR	3E-14		0.3095	[0.23-0.39] SD units decrease	NR [10700000] (imputed)	N
969	chr3	50412944	50412945	rs2071802	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	3p21.31	NR	rs2071802-A	0.110565	4E-8		5.5	z score decrease	NR [10847151] (imputed)	N
969	chr3	50420553	50420554	rs2236950	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	CACNA2D2	rs2236950-C	0.8258	2E-16		1.0407994		Affymetrix [11880941] (imputed)	N
969	chr3	50420553	50420554	rs2236950	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p21.31	CACNA2D2	rs2236950-A	0.1742	2E-16		0.0184224	[0.014-0.023] unit decrease	Affymetrix [11880941] (imputed)	N
969	chr3	50421080	50421081	rs2236951	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	3p21.31	NR	rs2236951-C	0.2	2E-8		0.017190572	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
969	chr3	50422717	50422718	rs2236952	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs2236952-?	NR	8E-12				Affymetrix [~ 8270000] (imputed)	N
969	chr3	50433966	50433967	rs2282752	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Age at voice drop	55,871 European ancestry individuals	NA	3p21.31	CACNA2D2	rs2282752-?	NR	4E-7		0.038	[-0.053-0.024] unit decrease	Illumina [12039491]	N
969	chr3	50438792	50438793	rs7613681	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.31	CACNA2D2	rs7613681-T	NR	3E-8		0.017335186	[0.011-0.023] unit increase	Affymetrix [NR]	N
969	chr3	50440551	50440552	rs17606778	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.31	CACNA2D2	rs17606778-A	0.1959	3E-12		0.0166	[0.012-0.021] unit increase	Affymetrix [18391927] (imputed)	N
969	chr3	50449823	50449824	rs9839996	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p21.31	NR	rs9839996-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
969	chr3	50450303	50450304	rs80094684	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs80094684-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
969	chr3	50457736	50457737	rs77495508	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs77495508-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
969	chr3	50457736	50457737	rs77495508	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p21.31	CACNA2D2	rs77495508-A	0.9379	4E-7		0.0044	[0.0028-0.006] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
970	chr3	50463934	50463935	rs1540293	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.31	NR	rs1540293-T	NR	2E-9		5.964	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
970	chr3	50463934	50463935	rs1540293	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.31	NR	rs1540293-?	NR	7E-7		4.95	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
970	chr3	50471407	50471408	rs11917680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p21.31		rs11917680-T	NR	3E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
970	chr3	50473348	50473349	rs2236971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p21.31		rs2236971-?	NR	2E-10				NR [~ 8900000] (imputed)	N
970	chr3	50474283	50474284	rs2236973	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	CACNA2D2	rs2236973-T		3E-6		0.255	unit decrease	Affymetrix [at least 2696785] (imputed)	N
970	chr3	50474283	50474284	rs2236973	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.31	CACNA2D2	rs2236973-T		5E-8		0.182	unit decrease	Affymetrix [at least 2696785] (imputed)	N
970	chr3	50474573	50474574	rs2236974	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.31	NR	rs2236974-G	0.110338	7E-9		0.05804553	[0.038-0.078] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
970	chr3	50476377	50476378	rs743757	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3p21.31	CACNA2D2	rs743757-C	0.14	2E-10		0.245	[0.17-0.32] unit increase	Affymetrix [~ 9800000] (imputed)	N
970	chr3	50481034	50481035	rs11917269	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	3p21.31	NR	rs11917269-G	0.738	9E-7		1.0916554	[NR]	NR [9372253] (imputed)	N
970	chr3	50505394	50505395	rs2236989	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.31	NR	rs2236989-?	NR	9E-9		1.0611993	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
970	chr3	50506056	50506057	rs113044297	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus velezensis abundance in stool	5,959 Finnish ancestry individuals	NA	3p21.31		rs113044297-T	0.0169834	3E-8		0.120529	[0.078-0.163] unit increase	Illumina [7980478] (imputed)	N
970	chr3	50513830	50513831	rs78431498	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs78431498-C	0.985	2E-18	(MST1, 4407_10_1)	0.88659537	[0.69-1.08] unit increase	Illumina [> 1000000] (imputed)	N
970	chr3	50513830	50513831	rs78431498	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs78431498-C	0.985	2E-17	(LHCGR, 14634_13_3)	0.84472454	[0.65-1.04] unit decrease	Illumina [> 1000000] (imputed)	N
970	chr3	50513830	50513831	rs78431498	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.31	NR	rs78431498-C	0.985	1E-19	(TXNDC12, 4815_25_3)	0.9135099	[0.72-1.11] unit decrease	Illumina [> 1000000] (imputed)	N
970	chr3	50519391	50519392	rs736471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.31	Intergenic	rs736471-T	0.4678	1E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
970	chr3	50519391	50519392	rs736471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs736471-T	0.4653	5E-9		0.0083	[0.0056-0.011] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
970	chr3	50519391	50519392	rs736471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.31	Intergenic	rs736471-T	0.4653	4E-11	(MTAG)	0.0087	[0.0062-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
970	chr3	50519391	50519392	rs736471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.31	Intergenic	rs736471-T	0.4622	5E-9	(MTAG)	0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
970	chr3	50521401	50521402	rs12492113	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (sum-score)	148,752 European ancestry individuals	NA	3p21.31	C3orf18, CACNA2D2, CYB561D2, DOCK3, HEMK1, HYAL1, LSMEM2, RBM6, MANF, MAPKAPK3	rs12492113-G	0.875	1E-9		0.124	[0.085-0.163] unit decrease	NR [9413637] (imputed)	N
970	chr3	50521401	50521402	rs12492113	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptoms (binary sum-score)	148,752 European ancestry individuals	NA	3p21.31	C3orf18, CACNA2D2, CYB561D2, DOCK3, HEMK1, HYAL1, LSMEM2, RBM6, MANF, MAPKAPK3	rs12492113-G	0.875	1E-10		0.037	[0.025-0.049] unit decrease	NR [9413637] (imputed)	N
970	chr3	50521401	50521402	rs12492113	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (fatigue) (ordinal trait)	148,752 European ancestry individuals	NA	3p21.31	CACNA2D2	rs12492113-G	0.875	2E-10		0.03	[0.02-0.04] unit decrease	NR [9413637] (imputed)	N
970	chr3	50521401	50521402	rs12492113	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (appetite changes) (binary trait)	26,757 European ancestry cases, 121,995 European ancestry controls	NA	3p21.31	C3orf18, CACNA2D2, CYB561D2, DOCK3, HEMK1, HYAL1, LSMEM2, RBM6, MANF, MAPKAPK3	rs12492113-G	0.875	9E-9		0.013	[0.0091-0.0169] unit decrease	NR [9413637] (imputed)	N
970	chr3	50531200	50531201	rs6792502	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	3p21.31	CACNA2D2	rs6792502-C	0.8548	2E-6		0.01	[0.0059-0.0141] unit increase	Affymetrix [~ 7740000] (imputed)	N
970	chr3	50531834	50531835	rs79821347	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.31	CACNA2D2	rs79821347-A	0.0677	4E-14		1.0539		Affymetrix [11880941] (imputed)	N
970	chr3	50534040	50534041	rs78342753	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.31	NR	rs78342753-G	NR	6E-11		0.2255	[0.16-0.29] SD units increase	NR [10700000] (imputed)	N
970	chr3	50536091	50536092	rs35198275	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee	373,522 European ancestry individuals	NA	3p21.31	CACNA2D2	rs35198275-A	0.865693	8E-10		0.020797	[0.014-0.027] unit increase	Affymetrix [19400838] (imputed)	N
970	chr3	50544416	50544417	rs73082948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.31	CACNA2D2	rs73082948-G	NR	2E-8		0.0230817	[0.015-0.031] unit increase	Affymetrix [321114] (imputed)	N
970	chr3	50552367	50552368	rs148828648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.31		rs148828648-?	NR	2E-8				NR [~ 8900000] (imputed)	N
970	chr3	50552865	50552866	rs11715134	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p21.31	NR	rs11715134-A	NR	3E-9		0.0251	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
970	chr3	50562041	50562042	rs11720093	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.31		rs11720093-T	0.0809	6E-9		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
970	chr3	50571584	50571585	rs7652260	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p21.31		rs7652260-C	0.8411	2E-8		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
970	chr3	50577414	50577415	rs13091933	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs13091933-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
970	chr3	50579085	50579086	rs78393402	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p21.31	NR	rs78393402-A	0.017959	2E-10		0.044208	[0.031-0.058] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
971	chr3	50597091	50597092	rs1034405	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3p21.31	C3orf18	rs1034405-G	0.1348	2E-7		0.0163	[0.01-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
971	chr3	50597091	50597092	rs1034405	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3p21.31	C3orf18	rs1034405-G	0.1302	6E-7		0.0165	[0.01-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
971	chr3	50615538	50615539	rs388483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3p21.31		rs388483-A	0.427431	3E-8		0.0150753	[0.0097-0.0204] unit increase	Illumina [13479924] (imputed)	N
971	chr3	50632473	50632474	rs146753195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.31	NR	rs146753195-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
971	chr3	50632473	50632474	rs146753195	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p21.31	HEMK1	rs146753195-T	0.9763	5E-7		0.1137	[0.069-0.158] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
971	chr3	50632594	50632595	rs140440099	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.31	HEMK1	rs140440099-A	0.0234	1E-22		0.0613	[0.049-0.074] unit increase	Affymetrix [18391927] (imputed)	N
971	chr3	50636110	50636111	rs201198	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.31	NR	rs201198-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr3	50643304	50643305	rs201193	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.2		rs201193-?	NR	6E-15				NR [~ 8900000] (imputed)	N
971	chr3	50645080	50645081	rs138916184	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.2	CISH	rs138916184-T	0.00319700000000001	8E-10		0.11995878	[0.082-0.158] unit increase	Affymetrix [93095623] (imputed)	N
971	chr3	50670824	50670825	rs185827463	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.2	MAPKAPK3	rs185827463-T	0.00522299999999998	8E-9		0.09468842	[0.063-0.127] unit decrease	Affymetrix [93095623] (imputed)	N
971	chr3	50671765	50671766	rs112256201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.2	NR	rs112256201-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr3	50671765	50671766	rs112256201	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs112256201-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
971	chr3	50673525	50673526	rs138636117	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.2	NR	rs138636117-?	NR	3E-8		1.134623	[1.09-1.18]	Affymetrix, Illumina [12447948] (imputed)	N
971	chr3	50690448	50690449	rs551831489	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.2	NR	rs551831489-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
971	chr3	50699714	50699715	rs11716398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.2		rs11716398-A	0.8663	2E-14		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
971	chr3	50699714	50699715	rs11716398	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.2	Intergenic	rs11716398-A	0.8663	2E-15	(MTAG)	0.0153	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
971	chr3	50711000	50711001	rs34985176	28779025	Alberts R	2017-08-04	Gut	Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.	Cholangiocarcinoma in primary sclerosing cholangitis (time to event)	188 European ancestry cholangiocarcinoma cases, 3,147 European ancestry cholangiocarcinoma-free cases	NA	3p21.2	CACNA2D2, C3orf18, HEMK1, CISH, MAPKAPK3, MIR4787, DOCK3	rs34985176-?	NR	4E-6				Illumina [130422]	N
972	chr3	50726193	50726194	rs62260125	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p21.2	DOCK3	rs62260125-T	0.0617	1E-13		1.0572		Affymetrix [11880941] (imputed)	N
972	chr3	50741270	50741270	rs34223701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p21.2	DOCK3	rs34223701-AT	0.871185	1E-13		0.025212891	[0.019-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr3	50751148	50751149	rs17659990	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	3p21.2	DOCK3	rs17659990-?		5E-9		1.875	[NR]	Affymetrix [492217] (imputed)	N
972	chr3	50751148	50751149	rs17659990	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	3p21.2	DOCK3	rs17659990-?		1E-7		1.925	[NR]	Affymetrix [492217] (imputed)	N
972	chr3	50771623	50771624	rs73072483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p21.2		rs73072483-A	NR	5E-24		0.0243	[0.02-0.029] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
972	chr3	50771623	50771624	rs73072483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.2	DOCK3	rs73072483-A	0.126673	2E-18		0.029660126	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr3	50771623	50771624	rs73072483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p21.2	DOCK3	rs73072483-A	0.126689	3E-17		0.0285637	[0.022-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
972	chr3	50771623	50771624	rs73072483	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p21.2	DOCK3	rs73072483-G	0.87	1E-8				NR [> 9500000] (imputed)	N
972	chr3	50771623	50771624	rs73072483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.2		rs73072483-?	NR	3E-33				NR [~ 8900000] (imputed)	N
972	chr3	50771623	50771624	rs73072483	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3p21.2	DOCK3	rs73072483-A	0.1279	4E-9		0.03137277	[0.021-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
972	chr3	50798651	50798652	rs148179194	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	3p21.2	C3orf18, HEMK1, DOCK3	rs148179194-T	NR	7E-6		0.8813	[0.5-1.27] unit increase	Illumina [9290362] (imputed)	N
973	chr3	50856220	50856224	rs138730454	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs138730454-ATTGT	NR	1E-10		0.2274	[0.16-0.3] SD units decrease	NR [10700000] (imputed)	N
973	chr3	50902212	50902213	rs77031559	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p21.2	NR	rs77031559-G	0.06595700000000004	9E-9		0.0273345	[0.017-0.037] unit increase	Affymetrix [16585745] (imputed)	N
973	chr3	50904641	50904642	rs1598927	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p21.2	DOCK3	rs1598927-A	0.127855	8E-12		0.023193173	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
973	chr3	50919625	50919626	rs7633959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.2	Intergenic	rs7633959-T	0.8715	5E-9	(MTAG)	0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
973	chr3	50919625	50919626	rs7633959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.2	Intergenic	rs7633959-T	0.8726	2E-8	(MTAG)	0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
973	chr3	50920456	50920457	rs182355396	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p21.2	NR	rs182355396-?		2E-10		0.0802623	[0.055-0.105] unit decrease	Affymetrix [19400418] (imputed)	N
973	chr3	50920456	50920457	rs182355396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.2		rs182355396-A	0.0084	4E-10		0.0525	[0.036-0.069] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
973	chr3	50929872	50929873	rs62257807	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p21.2	DOCK3	rs62257807-T	0.0602	4E-7		0.0046	[0.003-0.0062] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
973	chr3	50974242	50974243	rs560920364	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.2		rs560920364-?	NR	1E-15		0.135998	[0.1-0.17] unit decrease	Affymetrix [20259828] (imputed)	N
974	chr3	50998815	50998816	rs9869826	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals		MAPKAPK3, DOCK3, ST13P14	rs9869826-C	0.09219858	2E-12	(EA, Hepatocyte growth factor-like protein)	0.5418	[0.39-0.69] unit decrease	Affymetrix [509946]	N
974	chr3	50998815	50998816	rs9869826	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls		DOCK3	rs9869826-?	NR	4E-6		1.2658228	[NR]	Affymetrix [up to 10996499] (imputed)	N
974	chr3	51016958	51016959	rs13069365	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.2	DOCK3	rs13069365-T	0.124267	8E-9		0.01897	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
974	chr3	51016958	51016959	rs13069365	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.2	DOCK3	rs13069365-T	0.124267	3E-8	(females)	0.02343	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
974	chr3	51016958	51016959	rs13069365	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.2	DOCK3	rs13069365-T	0.124267	8E-8	(males)	0.01542	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
974	chr3	51016958	51016959	rs13069365	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.2	DOCK3	rs13069365-T	0.124267	3E-11		0.01842	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
974	chr3	51016958	51016959	rs13069365	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.2	DOCK3	rs13069365-T	0.124267	1E-6	(females)	0.02069	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
974	chr3	51043598	51043599	rs76442143	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.2	NR	rs76442143-?	NR	6E-10		1.1184	[1.08-1.15]	Affymetrix, Illumina [12447948] (imputed)	N
974	chr3	51043598	51043599	rs76442143	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	3p21.2	NR	rs76442143-?	NR	6E-10		1.12		Affymetrix, Illumina [9938587] (imputed)	N
974	chr3	51047620	51047621	rs150421637	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs150421637-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
974	chr3	51047620	51047621	rs150421637	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.2		rs150421637-A	0.0169	1E-8		0.0349	[0.023-0.047] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
974	chr3	51071712	51071713	rs13088462	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3p21.2	DOCK3	rs13088462-T	0.941	8E-18		0.059	[0.045-0.073] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
974	chr3	51071712	51071713	rs13088462	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p21.2	DOCK3	rs13088462-T	0.94	4E-10		0.052	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
974	chr3	51080039	51080040	rs55966607	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.2	NR	rs55966607-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
974	chr3	51095201	51095202	rs76761409	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.2	NR	rs76761409-A	NR	3E-10		0.0617	[0.042-0.081] unit increase	Affymetrix [9000000] (imputed)	N
974	chr3	51095201	51095202	rs76761409	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs76761409-G	NR	1E-8		0.2437	[0.16-0.33] SD units decrease	NR [10700000] (imputed)	N
974	chr3	51100019	51100020	rs11920441	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs11920441-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
974	chr3	51100019	51100020	rs11920441	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p21.2	MANF	rs11920441-C	0.343474198293528	8E-7		0.0027808	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
974	chr3	51101184	51101185	rs78909740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.2	NR	rs78909740-C	NR	3E-14		0.0369	[0.027-0.047] unit increase	Affymetrix [9000000] (imputed)	N
974	chr3	51101184	51101185	rs78909740	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3p21.2	NR	rs78909740-C	NR	1E-9		0.0309	[0.021-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
974	chr3	51112172	51112173	rs551736560	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3p21.2	DOCK3	rs551736560-T	0.0019	4E-6		1.143	[0.66-1.63] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
974	chr3	51112172	51112173	rs551736560	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	3p21.2	DOCK3	rs551736560-T	0.0019	5E-6		1.1003	[0.63-1.57] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
975	chr3	51120112	51120113	rs76089552	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p21.2	NR	rs76089552-?	NR	5E-6		10514.731	NR unit decrease	Illumina [2379855]	N
975	chr3	51123590	51123591	rs10212257	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p21.2	NR	rs10212257-C	0.851111	1E-8		0.0568963	[0.037-0.077] unit increase	Affymetrix [17914406] (imputed)	N
975	chr3	51180778	51180779	rs4289378	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.2	DOCK3	rs4289378-T	NR	7E-11		0.0343694	[0.024-0.045] unit increase	Affymetrix [321114] (imputed)	N
975	chr3	51180778	51180779	rs4289378	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs4289378-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
975	chr3	51180790	51180791	rs144965316	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p21.2		rs144965316-?	NR	4E-8				NR [NR]	N
975	chr3	51191465	51191466	rs114142815	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p21.2	DOCK3	rs114142815-T	0.0936	4E-9		0.1077	[0.072-0.143] unit increase	NR [9744772] (imputed)	N
975	chr3	51192125	51192126	rs4256170	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p21.2	NR	rs4256170-A	NR	5E-9		0.0462	[0.031-0.062] unit increase	Affymetrix [9000000] (imputed)	N
975	chr3	51192197	51192198	rs6445393	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p21.2	NR	rs6445393-C	0.107871	9E-9		0.0196186	[0.013-0.026] unit increase	NR [NR]	N
975	chr3	51208645	51208646	rs4378999	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p21.2	DOCK3	rs4378999-T	0.12	9E-9		0.029	[0.019-0.039] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
975	chr3	51208645	51208646	rs4378999	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.2	DOCK3	rs4378999-T	NR	3E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
975	chr3	51208645	51208646	rs4378999	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.2	DOCK3	rs4378999-T	0.119	8E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
975	chr3	51209730	51209731	rs150678371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3p21.2	DOCK3	rs150678371-T	0.0735	3E-13		0.05025638	[0.037-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
976	chr3	51276085	51276086	rs4714901	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p21.2	NR	rs4714901-?	NR	5E-8		5.465	NR z score increase	Illumina [at least 830937] (imputed)	N
976	chr3	51293954	51293955	rs10446472	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p21.2		rs10446472-A	0.1623	1E-6		33.14677	z score increase	NR [6814003]	N
976	chr3	51301418	51301419	rs117465168	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.2	NR	rs117465168-?	NR	3E-8		1.1345072	[1.09-1.18]	Affymetrix, Illumina [12447948] (imputed)	N
976	chr3	51311573	51311574	rs10433609	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.2	NR	rs10433609-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
976	chr3	51333958	51333959	rs138625771	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p21.2	DOCK3	rs138625771-C	NR	1E-14		0.0788121	[0.059-0.099] unit increase	Affymetrix [323123] (imputed)	N
976	chr3	51333958	51333959	rs138625771	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	3p21.2		rs138625771-C	NR	7E-9		0.0208335	[0.014-0.028] years increase	NR [7400000] (imputed)	N
976	chr3	51333958	51333959	rs138625771	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	3p21.2		rs138625771-C	NR	9E-13		0.084535	[0.061-0.108] years increase	NR [7400000] (imputed)	N
976	chr3	51335220	51335225	rs776310505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.2	DOCK3	rs776310505-A	NR	8E-9		0.0286758	[0.019-0.038] unit increase	Affymetrix [321114] (imputed)	N
976	chr3	51350595	51350595	rs150096123	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.2	DOCK3	rs150096123-AT	NR	5E-8		0.0551548	[0.035-0.075] unit increase	Affymetrix [321114] (imputed)	N
976	chr3	51351540	51351541	rs543226695	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p21.2		rs543226695-?	NR	5E-13		0.0900384	[0.066-0.115] unit decrease	Affymetrix [20259828] (imputed)	N
976	chr3	51353512	51353512	rs200426909	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs200426909-TA	NR	4E-10		0.2384	[0.16-0.31] SD units increase	NR [10700000] (imputed)	N
976	chr3	51371322	51371323	rs73078622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3p21.2	DOCK3	rs73078622-G	0.0707	2E-13		0.05179159	[0.038-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
976	chr3	51371322	51371323	rs73078622	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3p21.2	DOCK3	rs73078622-G	0.0707	4E-13		0.05124336	[0.037-0.065] unit decrease	Affymetrix [~ 2500000] (imputed)	N
976	chr3	51379273	51379274	rs1031925	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	3p21.2	DOCK3	rs1031925-?		8E-6		1.15	[1.08-1.22]	Affymetrix, Illumina [1579307] (imputed)	N
977	chr3	51388393	51388394	rs78486117	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p21.2	DOCK3, IQCF1	rs78486117-?		8E-9				Affymetrix, Illumina [NR] (imputed)	N
977	chr3	51408050	51408051	rs1552074	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	3p21.2		rs1552074-C	0.1399	5E-39		0.354529	[0.3-0.41] unit decrease	Illumina [7506463] (imputed)	N
977	chr3	51408050	51408051	rs1552074	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.2	NR	rs1552074-T	0.859375	4E-15	(TXNDC12, 4815_25_3)	0.2830689	[0.21-0.35] unit increase	Illumina [> 1000000] (imputed)	N
977	chr3	51408050	51408051	rs1552074	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.2	NR	rs1552074-T	0.859375	3E-28	(MANF, 9223_11_3)	0.39118403	[0.32-0.46] unit increase	Illumina [> 1000000] (imputed)	N
977	chr3	51410063	51410064	rs10510757	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.2		rs10510757-?	NR	2E-8				NR [~ 8900000] (imputed)	N
977	chr3	51437027	51437028	rs77601270	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		3p21.2	RBM15B, VPRBP	rs77601270-G	NR	3E-10		0.040224	[0.024-0.056] nmol/l increase	NR [19000000] (imputed)	N
977	chr3	51441306	51441307	rs73078636	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3p21.2	DCAF1	rs73078636-G	0.869747	5E-8		1.0499036	[1.03171119079686-1.06841682979067]	NR [9572556] (imputed)	N
977	chr3	51441306	51441307	rs73078636	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3p21.2	VPRBP	rs73078636-A	0.1291	2E-9				Affymetrix [15688218] (imputed)	N
977	chr3	51441306	51441307	rs73078636	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3p21.2		rs73078636-?	NR	2E-8				NR [~ 8900000] (imputed)	N
977	chr3	51441306	51441307	rs73078636	29679657	Ferreira MA	2018-04-18	J Allergy Clin Immunol	Eleven loci with new reproducible genetic associations with allergic disease risk.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3p21.2	RBM15B, VPRBP	rs73078636-A	0.148	1E-7	(conditional)	0.0403	NR unit decrease	NR [NR]	N
977	chr3	51455191	51455196	rs782765221	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p21.2		rs782765221-G	NR	7E-9		0.0361	[0.024-0.048] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
977	chr3	51458278	51458279	rs112510197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACY1	5,365 Icelandic ancestry individuals	NA	3p21.2		rs112510197-G	0.01918	7E-23		0.660343	[0.53-0.79] unit decrease	Illumina [7506463] (imputed)	N
977	chr3	51460030	51460031	rs55798953	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs55798953-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
977	chr3	51463176	51463177	rs146381464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.2		rs146381464-?	NR	9E-86				NR [~ 8900000] (imputed)	N
977	chr3	51469247	51469248	rs35971989	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p21.2	VPRBP	rs35971989-?	NR	3E-8		0.014847553	[0.0096-0.0201] unit increase	NR [7306098]	N
977	chr3	51469247	51469248	rs35971989	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p21.2	NR	rs35971989-A	0.8444	3E-8		0.017542955	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
978	chr3	51522675	51522676	rs62257549	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	3p21.2	VPRBP	rs62257549-G	0.7989	2E-13		1.0526316	[1.03-1.06]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
978	chr3	51528279	51528280	rs56224965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.2	Intergenic	rs56224965-A	0.1175	7E-11	(MTAG)	0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
978	chr3	51528279	51528280	rs56224965	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.2	Intergenic	rs56224965-A	0.1109	1E-9	(MTAG)	0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
978	chr3	51548532	51548532	rs201045437	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs201045437-TATTG	NR	4E-8		0.2228	[0.14-0.3] SD units increase	NR [10700000] (imputed)	N
978	chr3	51593112	51593113	rs62257555	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p21.2	RAD54L2	rs62257555-A	0.9418	4E-7		0.0048	[0.003-0.0066] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
978	chr3	51593112	51593113	rs62257555	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p21.2	RAD54L2	rs62257555-A	0.9414	2E-7		0.0048	[0.003-0.0066] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
979	chr3	51702480	51702481	rs1127553	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs1127553-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
979	chr3	51706178	51706179	rs4355273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs4355273-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
979	chr3	51738255	51738256	rs4067	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p21.2	NR	rs4067-G	0.854622	2E-10		0.0242583	[0.016-0.032] unit increase	Affymetrix [16580851] (imputed)	N
979	chr3	51738967	51738968	rs114746017	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs114746017-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
979	chr3	51747287	51747288	rs116567227	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs116567227-G	NR	5E-10		0.2077	[0.14-0.27] SD units decrease	NR [10700000] (imputed)	N
980	chr3	51776103	51776104	rs141829833	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p21.2		rs141829833-?	NR	6E-25				NR [~ 8900000] (imputed)	N
980	chr3	51797113	51797114	rs62259687	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.2	NR	rs62259687-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
980	chr3	51847708	51847709	rs62259692	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.2	IQCF3	rs62259692-G	0.9386	1E-9		0.0177511	[0.012-0.023] unit decrease	Affymetrix [12370749]	N
981	chr3	51917014	51917015	rs1605070	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3p21.2	IQCF5	rs1605070-?	0.14	2E-9		3.9462	[2.78601-5.589479]	Illumina [859311]	N
981	chr3	51926816	51926817	rs73082723	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.2	IQCF1	rs73082723-C	0.780223	9E-11		0.0155127	[0.011-0.02] unit decrease	Affymetrix [NR] (imputed)	N
981	chr3	51926816	51926817	rs73082723	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p21.2	IQCF1	rs73082723-C	0.780259	9E-10		0.0151008	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
981	chr3	51963903	51963904	rs11921171	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.2	NR	rs11921171-C	NR	6E-12		0.0341	[0.024-0.044] unit increase	Affymetrix [9000000] (imputed)	N
981	chr3	51999462	51999463	rs323877	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs323877-G	NR	2E-9		0.1034	[0.07-0.137] SD units increase	NR [10700000] (imputed)	N
981	chr3	52018508	52018509	rs62259756	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.2		rs62259756-?	NR	2E-12				NR [~ 8900000] (imputed)	N
981	chr3	52022836	52022837	rs121912698	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Vitamin D levels	418,691 European ancestry individuals	NA	3p21.2		rs121912698-?	NR	1E-8		0.0985172	[0.064-0.133] unit increase	NR [9800000] (imputed)	N
981	chr3	52022836	52022837	rs121912698	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	3p21.2		rs121912698-?	NR	3E-23		0.162013	[0.13-0.19] unit increase	NR [9800000] (imputed)	N
981	chr3	52022836	52022837	rs121912698	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p21.2	NR	rs121912698-T	NR	6E-18		0.1634	[0.13-0.2] unit increase	Affymetrix [9000000] (imputed)	N
981	chr3	52023019	52023020	rs2229152	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	3p21.2	POC1A, ACY1, ABHD14A-ACY1	rs2229152-?	NR	2E-12	(N-acetylalanine)	1.26	[NR] unit increase	Illumina [14760605] (imputed)	N
981	chr3	52029990	52029991	rs62259757	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p21.2	intergenic	rs62259757-A	0.0681	4E-9		0.0388	[0.026-0.052] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
982	chr3	52046706	52046707	rs74453875	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.2		rs74453875-A	0.0392	6E-9		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
982	chr3	52046706	52046707	rs74453875	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.2	Intergenic	rs74453875-A	0.0392	1E-8	(MTAG)	0.0194	[0.013-0.026] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
982	chr3	52059635	52059636	rs9873175	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p21.2		rs9873175-?	NR	2E-9				NR [~ 8900000] (imputed)	N
982	chr3	52075943	52075944	rs7642787	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.2	NR	rs7642787-?	NR	8E-6		4.464	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
982	chr3	52076177	52076178	rs146311338	31560688	Geidenstam N	2019-09-27	PLoS One	Using metabolite profiling to construct and validate a metabolite risk score for predicting future weight gain.	Tyrosine levels	1,937 individuals	NA	3p21.2	intergenic	rs146311338-T	0.07	3E-7		0.4004	[0.25-0.55] unit increase	Affymetrix, Illumina [up to 22000000] (imputed)	N
982	chr3	52115751	52115752	rs77861329	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p21.2	NR	rs77861329-G	NR	2E-9		0.1356	[0.091-0.18] SD units decrease	NR [10700000] (imputed)	N
982	chr3	52154887	52154888	rs73835707	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	3p21.2	POC1A, ACY1, ABHD14A-ACY1	rs73835707-?	NR	6E-13	(N-acetylmethionine sulfoxide)	1.24	[NR] unit increase	Illumina [14760605] (imputed)	N
982	chr3	52154887	52154888	rs73835707	33838163	Luo S	2021-04-07	Kidney Int	Genome-wide association study of serum metabolites in the African American Study of Kidney Disease and Hypertension.	Serum metabolite concentrations in chronic kidney disease	619 African American individuals	NA	3p21.2	POC1A, ACY1, ABHD14A-ACY1	rs73835707-?	NR	5E-13	(N-acetylmethionine)	1.38	[NR] unit increase	Illumina [14760605] (imputed)	N
983	chr3	52170861	52170862	rs6809294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.2	POC1A	rs6809294-C	NR	1E-11		0.0243335	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
983	chr3	52170861	52170862	rs6809294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.2	POC1A	rs6809294-C	NR	2E-8		0.0202778	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
983	chr3	52170861	52170862	rs6809294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.2	NR	rs6809294-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
983	chr3	52170861	52170862	rs6809294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs6809294-?	NR	6E-16				Affymetrix [~ 8270000] (imputed)	N
983	chr3	52210981	52210982	rs79957430	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.2	ALDOAP1	rs79957430-A	NR	3E-10		0.0695586	[0.048-0.091] unit decrease	Affymetrix [321114] (imputed)	N
983	chr3	52210981	52210982	rs79957430	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs79957430-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
983	chr3	52220202	52220203	rs614288	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or type 2 diabetes	20,352 European ancestry bipolar disorder cases, 26,676 European ancestry type 2 diabetes cases, 163,890 European ancestry controls	NA	3p21.2	intergenic	rs614288-T	NR	2E-8		0.05	[0.030-0.070] unit increase	NR [2013566] (imputed)	N
983	chr3	52220482	52220483	rs352159	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.2	NR	rs352159-C	NR	4E-9		0.0331	[0.022-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
983	chr3	52227701	52227702	rs114431834	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.2	NR	rs114431834-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
983	chr3	52241228	52241229	rs164641	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	3p21.2		rs164641-T	0.950973	5E-9		0.0553874	[0.037-0.074] unit increase	NR [11722792] (imputed)	N
983	chr3	52247313	52247314	rs164640	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p21.2	NR	rs164640-T	0.529722021411205	1E-10		0.0059197964	[0.0041-0.0077] unit decrease	NR [NR]	N
983	chr3	52247313	52247314	rs164640	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.2	NR	rs164640-T	0.529722021411205	2E-10		0.0072011882	[0.005-0.0094] unit decrease	NR [NR]	N
983	chr3	52247313	52247314	rs164640	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p21.2	NR	rs164640-T	0.529722021411205	2E-10		0.009364295	[0.0065-0.0122] unit decrease	NR [NR]	N
983	chr3	52247313	52247314	rs164640	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.2	NR	rs164640-T	0.529722021411205	4E-10		0.0076479972	[0.0052-0.01] unit decrease	NR [NR]	N
983	chr3	52247313	52247314	rs164640	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p21.2	NR	rs164640-T	0.529722021411205	2E-10		0.005979414	[0.0041-0.0078] unit decrease	NR [NR]	N
983	chr3	52256696	52256697	rs352140	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.2	NR	rs352140-C	NR	3E-11		0.01598	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.2	TLR9	rs187084-G	NR	1E-13		0.0215131	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.2	TLR9	rs187084-G	NR	3E-14		0.0220801	[0.016-0.028] unit decrease	Affymetrix [319769] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.2	TLR9	rs187084-G	NR	7E-9		0.0185985	[0.012-0.025] unit decrease	Affymetrix [127266] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.2	TLR9	rs187084-G	NR	2E-14		0.0223081	[0.017-0.028] unit decrease	Affymetrix [321114] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.2	TLR9	rs187084-G	NR	2E-9		0.0190344	[0.013-0.025] unit decrease	Affymetrix [321114] (imputed)	N
983	chr3	52261030	52261031	rs187084	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.2	TLR9	rs187084-G	NR	2E-12		0.0206942	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
983	chr3	52261030	52261031	rs187084	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.2	TLR9	rs187084-A	NR	1E-9		6.048	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
983	chr3	52267117	52267118	rs352141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	3p21.2		rs352141-G	0.950782	1E-8		0.0540878	[0.035-0.073] unit increase	NR [11722792] (imputed)	N
983	chr3	52267117	52267118	rs352141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	3p21.2		rs352141-G	0.950782	2E-8		0.053292	[0.035-0.072] unit increase	NR [11722792] (imputed)	N
983	chr3	52268865	52268866	rs353547	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.2	NR	rs353547-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
983	chr3	52268865	52268866	rs353547	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.2	NR	rs353547-T	NR	5E-12		0.01697	[0.012-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
983	chr3	52268865	52268866	rs353547	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.2	TNNC1	rs353547-T	0.372763	2E-9		6.015	unit decrease	NR [10847151] (imputed)	N
983	chr3	52268865	52268866	rs353547	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p21.2	TLR9	rs353547-T	0.372763	2E-9		6.0	z score decrease	NR [10847151] (imputed)	N
983	chr3	52268865	52268866	rs353547	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p21.2	ALAS1, BAP1, DNAH1, GLT8D1, GLYCTK, GLYCTK-AS1, GNL3, ITIH1, ITIH3, ITIH4, MIR135A1, MIRLET7G, NEK4, NISCH, NT5DC2, PBRM1, PHF7, PPM1M, SEMA3G, SMIM4, SNORD136, SNORD19, SNORD19B, SNORD69, SPCS1, STAB1, TLR9, TNNC1, TWF2, WDR82	rs353547-?		4E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [NR]	N
983	chr3	52269490	52269491	rs353548	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Distal colorectal cancer	14,376 European ancestry cases, 64,159 European ancestry controls	NA	3p21.2	STAB1, TLR9, NISCH	rs353548-G	0.9533	5E-7		1.18	[1.11-1.27]	Affymetrix, Illumina [11353757] (imputed)	N
983	chr3	52269490	52269491	rs353548	33632709	Huyghe JR	2021-02-25	Gut	Genetic architectures of proximal and distal colorectal cancer are partly distinct.	Colon cancer	32,002 European ancestry cases, 64,159 European ancestry controls	NA	3p21.2	STAB1, TLR9, NISCH	rs353548-G	0.953	1E-8		1.15	[1.10-1.21]	Affymetrix, Illumina [11928745] (imputed)	N
983	chr3	52279593	52279594	rs7618915	22182935	Chen DT	2011-12-20	Mol Psychiatry	Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder.	Bipolar disorder	5,568 European ancestry cases, 7,187 European ancestry controls, 1,000 Taiwanese ancestry cases, 1,000 Taiwanese ancestry controls	1,115 European ancestry cases, 2,728 European ancestry controls	3p21.2	intergenic	rs7618915-G	NR	3E-10				Affymetrix, Illumina [748555]	N
983	chr3	52287467	52287468	rs11717383	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.2	WDR82	rs11717383-T	NR	1E-8		5.737	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
983	chr3	52287467	52287468	rs11717383	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.2	NR	rs11717383-G	NR	3E-9		1.0638298	[NR]	Illumina [7158791] (imputed)	N
983	chr3	52288944	52288945	rs1060330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.2	WDR82	rs1060330-C	NR	1E-9		0.0188928	[0.013-0.025] unit decrease	Affymetrix [323858] (imputed)	N
983	chr3	52288944	52288945	rs1060330	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.2	WDR82	rs1060330-C	NR	2E-8		0.0173287	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
983	chr3	52288944	52288945	rs1060330	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p21.2	NR	rs1060330-T	0.494155726283807	2E-6				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
983	chr3	52288944	52288945	rs1060330	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p21.2	NR	rs1060330-T	0.494155726283807	3E-8		0.018098544	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
984	chr3	52299520	52299521	rs59612757	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3p21.2		rs59612757-T	0.819431	4E-8		0.0282519	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
984	chr3	52305632	52305633	rs7629072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.2	WDR82	rs7629072-T	NR	3E-10		0.0197281	[0.014-0.026] unit decrease	Affymetrix [127266] (imputed)	N
984	chr3	52310441	52310442	rs699465	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3p21.2	WDR82	rs699465-A	0.1484	5E-13		0.033	[0.024-0.042] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
984	chr3	52310441	52310442	rs699465	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3p21.2	NR	rs699465-A	0.148	3E-7	(women)	0.0342	[0.021-0.047] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
984	chr3	52313431	52313432	rs34135146	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.2	NR	rs34135146-C	NR	1E-9		0.02174	[0.015-0.029] unit decrease	Affymetrix [10847151] (imputed)	N
984	chr3	52322416	52322417	rs57615517	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3p21.2	NR	rs57615517-G	0.684987	5E-10		0.00804383	[0.0053-0.0108] unit increase	Affymetrix [16578495] (imputed)	N
984	chr3	52325758	52325759	rs2276834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.2	NR	rs2276834-G	0.500956	2E-10				Affymetrix, Illumina [24588908] (imputed)	N
984	chr3	52325758	52325759	rs2276834	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.2	GLYCTK	rs2276834-A		1E-9		0.013	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
984	chr3	52333670	52333671	rs7622851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.2	GLYCTK-AS1	rs7622851-G	NR	4E-18		0.0244135	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
984	chr3	52333670	52333671	rs7622851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.2	GLYCTK-AS1	rs7622851-G	NR	8E-19		0.0249104	[0.019-0.03] unit decrease	Affymetrix [319769] (imputed)	N
984	chr3	52333670	52333671	rs7622851	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.2	GLYCTK-AS1	rs7622851-G	NR	9E-16		0.022844	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
984	chr3	52338851	52338852	rs9311474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	GLYCTK-AS1	rs9311474-C	NR	4E-18		0.0246465	[0.019-0.03] unit decrease	Affymetrix [321114] (imputed)	N
984	chr3	52338851	52338852	rs9311474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs9311474-C	NR	1E-16		0.0198	[0.015-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
984	chr3	52338851	52338852	rs9311474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.1	NR	rs9311474-C	NR	2E-13		0.0175	[0.013-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
984	chr3	52338851	52338852	rs9311474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p21.1	NR	rs9311474-C	NR	2E-9		0.015	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
984	chr3	52338851	52338852	rs9311474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3p21.1	NR	rs9311474-C	NR	2E-9		0.0143	[0.0096-0.019] unit decrease	Affymetrix [9000000] (imputed)	N
984	chr3	52338851	52338852	rs9311474	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p21.1	NR	rs9311474-C	0.49938	2E-11		0.013052	[0.0092-0.0169] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
984	chr3	52338851	52338852	rs9311474	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	3p21.1	DNAH1	rs9311474-?	NR	9E-6	(Alpha power, Cz)	0.094	[0.053-0.135] unit increase	Illumina [527829]	N
984	chr3	52344679	52344680	rs17052058	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.1		rs17052058-A	0.819169	3E-8		0.0280193	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
984	chr3	52344679	52344680	rs17052058	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3p21.1	PHF7	rs17052058-?	NR	5E-22		0.0328	[0.027-0.039] unit decrease	Affymetrix [5701386] (imputed)	N
984	chr3	52346239	52346240	rs17052061	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p21.1		rs17052061-G	NR	2E-26		0.0312	[0.026-0.037] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
984	chr3	52346729	52346730	rs111593386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs111593386-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819113	4E-8		0.0276505	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	1E-9		0.0309181	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	8E-9		0.0296012	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	4E-8		0.0276267	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	9E-10		0.0316629	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	1E-8		0.0296036	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	8E-9		0.029773	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	3p21.1		rs6796333-T	0.8191	3E-10		0.0313875	[0.022-0.041] unit increase	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	4E-8		0.0280909	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	1E-9		0.030787	[0.021-0.041] unit decrease	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	2E-8		0.0291612	[0.019-0.039] unit decrease	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	4E-8		0.0280055	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
984	chr3	52359677	52359678	rs6796333	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3p21.1		rs6796333-T	0.819102	5E-9		0.0297231	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
984	chr3	52367931	52367932	rs4687612	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs4687612-G	NR	4E-27		0.0369	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
984	chr3	52367931	52367932	rs4687612	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NR	rs4687612-?	NR	7E-8		5.383	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
984	chr3	52368318	52368319	rs62257590	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 15, philtrum width)	2,187 European ancestry individuals	NA	3p21.1	NR	rs62257590-G	0.03486	4E-6		0.3817	[0.22-0.54] unit increase	Illumina [10677593] (imputed)	N
984	chr3	52372365	52372366	rs11706108	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p21.1	DNAH1	rs11706108-T	0.7059	2E-14		0.026	[0.019-0.033] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
984	chr3	52374515	52374516	rs56357549	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p21.1	DNAH1	rs56357549-T	0.8224	3E-12		0.0154127	[0.011-0.02] unit increase	Affymetrix [11880941] (imputed)	N
984	chr3	52383842	52383843	rs61734645	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs61734645-G	NR	2E-8		0.02945	[0.019-0.04] unit decrease	Affymetrix [10847151] (imputed)	N
984	chr3	52393441	52393442	rs2306864	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.1	NR	rs2306864-G	NR	1E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
984	chr3	52407411	52407412	rs34365302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	DNAH1	rs34365302-G	NR	2E-8		0.0254661	[0.017-0.034] unit decrease	Affymetrix [319769] (imputed)	N
984	chr3	52407411	52407412	rs34365302	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	DNAH1	rs34365302-G	NR	1E-8		0.0260869	[0.017-0.035] unit decrease	Affymetrix [319769] (imputed)	N
984	chr3	52411772	52411772	rs3066857	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p21.1		rs3066857-CGT	NR	4E-11		0.0139	[0.0098-0.018] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
985	chr3	52434094	52434095	rs73072980	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		DNAH1	rs73072980-?	NR	9E-10	(female)	2.49487	[NR] unit decrease	Affymetrix [NR] (imputed)	N
985	chr3	52450042	52450043	rs13094687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs13094687-G	NR	8E-16		0.0209	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52450042	52450043	rs13094687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.1	NR	rs13094687-G	NR	2E-10		0.0164	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
985	chr3	52450042	52450043	rs13094687	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3p21.1	NR	rs13094687-G	NR	4E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52453892	52453893	rs498778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.1	NR	rs498778-T	NR	8E-10		0.0339	[0.023-0.045] unit increase	Affymetrix [9000000] (imputed)	N
985	chr3	52453892	52453893	rs498778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.1	NR	rs498778-T	NR	3E-10		0.0362	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52453892	52453893	rs498778	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.1	NR	rs498778-T	NR	2E-9		0.0346	[0.023-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52464826	52464827	rs62257614	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	SEMA3G	rs62257614-C	NR	2E-10		0.0234644	[0.016-0.031] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52464826	52464827	rs62257614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs62257614-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52464826	52464827	rs62257614	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs62257614-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52467262	52467263	rs648514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3p21.1		rs648514-A	NR	1E-10		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
985	chr3	52467323	52467324	rs13091025	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3G	5,364 Icelandic ancestry individuals	NA	3p21.1		rs13091025-C	0.1144	9E-20		0.268891	[0.21-0.33] unit decrease	Illumina [7506463] (imputed)	N
985	chr3	52477079	52477080	rs2016575	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	SEMA3G	rs2016575-C	0.816	2E-17	(Semaphorin-3G, SEMA3G.5628.21.3)	0.27	[0.21-0.33] unit decrease	Affymetrix [10572788] (imputed)	N
985	chr3	52486901	52486902	rs115716895	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	TNNC1	rs115716895-A	NR	1E-9		0.0376482	[0.025-0.05] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52488745	52488745	rs763607523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	3p21.1		rs763607523-TCA	0.0576677	2E-8		0.0437875	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
985	chr3	52488745	52488745	rs763607523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3p21.1		rs763607523-TCA	0.0576677	5E-8		0.0426781	[0.027-0.058] unit increase	NR [11722792] (imputed)	N
985	chr3	52488745	52488745	rs763607523	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	3p21.1		rs763607523-TCA	0.0576677	3E-8		0.0436326	[0.028-0.059] unit increase	NR [11722792] (imputed)	N
985	chr3	52488745	52488745	rs763607523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	NISCH	rs763607523-TCA	NR	5E-17		0.050604	[0.039-0.062] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52488745	52488745	rs763607523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	NISCH	rs763607523-TCA	NR	7E-17		0.0503612	[0.039-0.062] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52488745	52488745	rs763607523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	NISCH	rs763607523-TCA	NR	4E-15		0.0480145	[0.036-0.06] unit decrease	Affymetrix [321169] (imputed)	N
985	chr3	52489048	52489049	rs3821838	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3p21.1	NISCH	rs3821838-T	0.0529349	3E-9		0.0275669	[0.018-0.037] unit decrease	Affymetrix [NR] (imputed)	N
985	chr3	52492706	52492707	rs1541495	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	NISCH	rs1541495-T	NR	4E-12		0.0416388	[0.03-0.053] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52492706	52492707	rs1541495	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs1541495-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52497777	52497778	rs6772177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	NISCH	rs6772177-T	NR	4E-10		0.023444	[0.016-0.031] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52497777	52497778	rs6772177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	NISCH	rs6772177-T	NR	8E-10		0.0230832	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52497777	52497778	rs6772177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p21.1	NR	rs6772177-C	0.828337	2E-12		0.0106604	[0.0074-0.0139] unit increase	Affymetrix [16585854] (imputed)	N
985	chr3	52497777	52497778	rs6772177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p21.1	NR	rs6772177-C	0.828337	9E-11		0.0117404	[0.008-0.0155] unit increase	Affymetrix [16585866] (imputed)	N
985	chr3	52497777	52497778	rs6772177	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3p21.1	NR	rs6772177-T	0.17159899999999995	2E-10		0.0203877	[0.014-0.027] unit increase	Affymetrix [16585745] (imputed)	N
985	chr3	52497777	52497778	rs6772177	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NISCH	rs6772177-T	NR	9E-9		5.752	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
985	chr3	52501450	52501451	rs2159607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p21.1		rs2159607-T	NR	1E-16		0.0237	[0.018-0.029] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
985	chr3	52501450	52501451	rs2159607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	NISCH	rs2159607-G	NR	1E-12		0.0255747	[0.019-0.033] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52501450	52501451	rs2159607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	NISCH	rs2159607-G	NR	2E-12		0.0252422	[0.018-0.032] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52501450	52501451	rs2159607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	NISCH	rs2159607-G	NR	4E-8		0.0198211	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52501450	52501451	rs2159607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	NISCH	rs2159607-G	NR	6E-10		0.0224785	[0.015-0.03] unit decrease	Affymetrix [321169] (imputed)	N
985	chr3	52501450	52501451	rs2159607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p21.1	NISCH	rs2159607-T	0.810599	7E-9		0.016508851	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
985	chr3	52501450	52501451	rs2159607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p21.1	NISCH	rs2159607-T	0.810591	2E-9		0.01716118	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
985	chr3	52501450	52501451	rs2159607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p21.1	NISCH	rs2159607-T	0.810669	3E-9		0.016791226	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
985	chr3	52501450	52501451	rs2159607	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p21.1	NISCH	rs2159607-T	0.810666	8E-9		0.016423136	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
985	chr3	52501450	52501451	rs2159607	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p21.1	NISCH	rs2159607-G	0.189129	9E-23		0.0238894	[0.019-0.029] unit increase	Affymetrix [NR] (imputed)	N
985	chr3	52501450	52501451	rs2159607	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p21.1	NR	rs2159607-T	0.8166	2E-15		0.0175	[0.013-0.022] unit increase	NR [~ 27400000] (imputed)	N
985	chr3	52503799	52503800	rs6445484	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on CD62L+ myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.1		rs6445484-G	0.89632	2E-24		0.4659	[0.38-0.55] unit increase	Illumina [17926466] (imputed)	N
985	chr3	52506425	52506426	rs6784615	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	3p21.1	NISCH, STAB1	rs6784615-T	0.94	4E-10		0.04	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
985	chr3	52506847	52506848	rs1011063	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEMA3G	5,364 Icelandic ancestry individuals	NA	3p21.1		rs1011063-C	0.17	2E-21		0.238419	[0.19-0.29] unit increase	Illumina [7506463] (imputed)	N
985	chr3	52506847	52506848	rs1011063	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	SEMA3G	rs1011063-T	0.83265625	2E-14	(SEMA3G, 5628_21_3)	0.24947171	[0.19-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
985	chr3	52507472	52507473	rs142281710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	NISCH	rs142281710-G	NR	2E-8		0.0627467	[0.041-0.085] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52507718	52507719	rs13094915	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p21.1	NR	rs13094915-G	0.631648	2E-9		0.0163011	[0.011-0.022] unit increase	Affymetrix [16580851] (imputed)	N
985	chr3	52507718	52507719	rs13094915	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs13094915-C	NR	7E-9		0.01446	[0.0096-0.0194] unit decrease	Affymetrix [10847151] (imputed)	N
985	chr3	52507781	52507782	rs56114678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	NISCH	rs56114678-A	NR	7E-9		0.0356409	[0.024-0.048] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52507781	52507782	rs56114678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	NISCH	rs56114678-A	NR	2E-8		0.0348149	[0.023-0.047] unit increase	Affymetrix [321169] (imputed)	N
985	chr3	52507781	52507782	rs56114678	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs56114678-A	NR	2E-10		0.0337	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
985	chr3	52507781	52507782	rs56114678	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs56114678-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52509276	52509277	rs4687617	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs4687617-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52516292	52516293	rs6800707	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p21.1	NISCH	rs6800707-C	0.18946	1E-31		0.0297573	[0.025-0.035] unit decrease	Affymetrix [NR] (imputed)	N
985	chr3	52516292	52516293	rs6800707	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p21.1	STAB1	rs6800707-G	0.809876808786122	3E-7		0.0035131	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
985	chr3	52520866	52520867	rs143380194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	NISCH	rs143380194-T	NR	9E-12		0.0754483	[0.054-0.097] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52520866	52520867	rs143380194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	NISCH	rs143380194-T	NR	2E-11		0.0738537	[0.052-0.096] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52520866	52520867	rs143380194	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	NISCH	rs143380194-T	NR	3E-9		0.0665112	[0.045-0.088] unit decrease	Affymetrix [321169] (imputed)	N
985	chr3	52527999	52528000	rs6787493	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on myeloid Dendritic Cell	2,871 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.1		rs6787493-C	0.89551	5E-19		0.4055	[0.32-0.49] unit increase	Illumina [17926466] (imputed)	N
985	chr3	52529265	52529266	rs758800	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.1		rs758800-C	0.89561	5E-48		0.6619	[0.57-0.75] unit increase	Illumina [17914520] (imputed)	N
985	chr3	52529898	52529899	rs9863753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs9863753-A	NR	1E-6		0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52529898	52529899	rs9863753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs9863753-A	0.06	7E-6	(EA)	0.042	unit decrease	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52529898	52529899	rs9863753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs9863753-A	NR	2E-11		0.054	unit increase	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52529898	52529899	rs9863753	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs9863753-A	0.06	6E-14	(EA)	0.064	unit increase	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52532117	52532118	rs13326165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	STAB1	rs13326165-A	NR	1E-11		0.0235626	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52532117	52532118	rs13326165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	STAB1	rs13326165-A	NR	2E-11		0.0233588	[0.017-0.03] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52532117	52532118	rs13326165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	STAB1	rs13326165-A	NR	5E-8		0.0191789	[0.012-0.026] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52532117	52532118	rs13326165	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	STAB1	rs13326165-A	NR	1E-11		0.0239145	[0.017-0.031] unit decrease	Affymetrix [321169] (imputed)	N
985	chr3	52532117	52532118	rs13326165	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p21.1	STAB1	rs13326165-A	0.204628	1E-15		0.0194797	[0.015-0.024] unit increase	Affymetrix [NR] (imputed)	N
985	chr3	52532117	52532118	rs13326165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs13326165-A	NR	1E-6		0.026	unit decrease	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52532117	52532118	rs13326165	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p21.1	NR	rs13326165-A	0.194	9E-6	(EA)	0.025	unit decrease	Affymetrix [at least 7091467] (imputed)	N
985	chr3	52532117	52532118	rs13326165	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3p21.1	STAB1	rs13326165-A	0.187	1E-10	(Trans-ethnic initial)	0.0289	[0.02-0.037] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
985	chr3	52532117	52532118	rs13326165	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3p21.1	STAB1	rs13326165-A	0.21	9E-11		0.029	[NR] unit increase	NR [NR] (imputed)	N
985	chr3	52536307	52536308	rs758801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	STAB1	rs758801-A	NR	1E-8		0.0228142	[0.015-0.031] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52536307	52536308	rs758801	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	STAB1	rs758801-A	NR	2E-8		0.0225091	[0.015-0.03] unit decrease	Affymetrix [319769] (imputed)	N
985	chr3	52536307	52536308	rs758801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.1	NR	rs758801-C	NR	1E-16		0.0278	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
985	chr3	52536307	52536308	rs758801	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.1	NR	rs758801-C	NR	3E-9		0.0208	[0.014-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52536307	52536308	rs758801	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.1		rs758801-?	NR	1E-12				NR [~ 8900000] (imputed)	N
985	chr3	52536513	52536514	rs731831	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.1	STAB1	rs731831-A	NR	1E-9		0.0201288	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
985	chr3	52536513	52536514	rs731831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p21.1		rs731831-?	NR	4E-8				NR [~ 8900000] (imputed)	N
985	chr3	52536513	52536514	rs731831	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs731831-A	NR	6E-10		6.185	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
985	chr3	52538299	52538300	rs7613444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	STAB1	rs7613444-C	NR	5E-9		0.0220997	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52538299	52538300	rs7613444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	STAB1	rs7613444-C	NR	3E-9		0.0225022	[0.015-0.03] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52538299	52538300	rs7613444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	STAB1	rs7613444-C	NR	1E-8		0.0218914	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
985	chr3	52538299	52538300	rs7613444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	STAB1	rs7613444-C	NR	3E-8		0.0212838	[0.014-0.029] unit increase	Affymetrix [321169] (imputed)	N
985	chr3	52538299	52538300	rs7613444	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs7613444-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
985	chr3	52539394	52539395	rs745795585	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	3p21.1	STAB1	rs745795585-A	0.0047	3E-19		0.29	[0.23-0.35] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
985	chr3	52540772	52540773	rs1010553	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	3p21.1	STAB1	rs1010553-T	NR	4E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
985	chr3	52540772	52540773	rs1010553	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	3p21.1	STAB1	rs1010553-T	0.5176	2E-8		0.0112182	[0.0073-0.0151] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
985	chr3	52540772	52540773	rs1010553	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3p21.1	STAB1	rs1010553-C	0.4846	1E-9		0.02148781	[0.015-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
985	chr3	52541252	52541253	rs11130306	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.1	SPCS1	rs11130306-A	0.496624	4E-11		6.593	unit decrease	NR [10847151] (imputed)	N
985	chr3	52542918	52542919	rs1010554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p21.1		rs1010554-C	NR	2E-19		0.015	[0.012-0.018] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
985	chr3	52542918	52542919	rs1010554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3p21.1		rs1010554-C	NR	3E-14		0.0143	[0.011-0.018] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
985	chr3	52546819	52546820	rs2015971	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUN3	5,364 Icelandic ancestry individuals	NA	3p21.1		rs2015971-T	0.4871	2E-12		0.135036	[0.098-0.172] unit increase	Illumina [7506463] (imputed)	N
985	chr3	52546819	52546820	rs2015971	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.1	NR	rs2015971-T	0.448578302436026	3E-10		0.0071475133	[0.0049-0.0094] unit decrease	NR [NR]	N
985	chr3	52546819	52546820	rs2015971	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p21.1	NR	rs2015971-T	0.448578302436026	2E-10		0.0093031665	[0.0064-0.0122] unit decrease	NR [NR]	N
985	chr3	52546819	52546820	rs2015971	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.1	NR	rs2015971-T	0.448578302436026	1E-9		0.0075768563	[0.0051-0.01] unit decrease	NR [NR]	N
985	chr3	52546819	52546820	rs2015971	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p21.1	NR	rs2015971-T	0.448578302436026	3E-10		0.0059366147	[0.0041-0.0078] unit decrease	NR [NR]	N
985	chr3	52546819	52546820	rs2015971	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p21.1		rs2015971-?	NR	2E-8				NR [~ 8900000] (imputed)	N
985	chr3	52546819	52546820	rs2015971	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p21.1	NR	rs2015971-T	NR	1E-8		5.704	z score decrease	Affymetrix [10847151] (imputed)	N
985	chr3	52551264	52551265	rs66824127	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Executive function (trail making test B)	78,547 British ancestry individuals	NA	3p21.1		rs66824127-?	NR	2E-9				NR [7857346] (imputed)	N
985	chr3	52551264	52551265	rs66824127	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Cognitive traits (MTAG)	331,679 British ancestry individuals	NA	3p21.1		rs66824127-?	NR	5E-11				NR [7857346] (imputed)	N
985	chr3	52551283	52551284	rs67409736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	STAB1	rs67409736-G	NR	3E-19		0.025403	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52551283	52551284	rs67409736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	STAB1	rs67409736-G	NR	6E-20		0.0259418	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
985	chr3	52551565	52551566	rs150956780	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels in off-statin users	6,877 Icelandic ancestry individuals	NA	3p21.1		rs150956780-?	NR	1E-11		2.6	unit decrease	Illumina [28300000] (imputed)	N
985	chr3	52551565	52551566	rs150956780	26838040	Kristjansson RP	2016-02-03	Nat Commun	Common and rare variants associating with serum levels of creatine kinase and lactate dehydrogenase.	Lactate dehydrogenase levels	98,585 Icelandic ancestry individuals	NA	3p21.1		rs150956780-C	7.8E-4	1E-61		1.526	unit decrease	Illumina [28300000] (imputed)	N
985	chr3	52553550	52553551	rs143894786	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	3p21.1	STAB1	rs143894786-C	0.433	2E-12		0.025		Illumina [243345]	N
985	chr3	52554303	52554304	rs7630214	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs7630214-C	NR	2E-13		0.035	[0.026-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
985	chr3	52555956	52555957	rs9853056	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p21.1	NR	rs9853056-T	0.4415	1E-17				NR [9056863] (imputed)	N
985	chr3	52556889	52556890	rs4434138	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.1	NR	rs4434138-A	0.473161	2E-10		0.040188894	[0.028-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
985	chr3	52556889	52556890	rs4434138	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p21.1	Intergenic	rs4434138-A	0.5385	1E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
985	chr3	52556889	52556890	rs4434138	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs4434138-G	NR	2E-9		0.01441	[0.0097-0.0191] unit decrease	Affymetrix [10847151] (imputed)	N
985	chr3	52556889	52556890	rs4434138	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	STAB1	rs4434138-A	NR	4E-10		0.019317327	[0.013-0.025] unit decrease	Affymetrix [NR]	N
985	chr3	52557037	52557038	rs4234633	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p21.1	STAB1	rs4234633-?	NR	9E-13		0.02065012	[0.015-0.026] unit decrease	Illumina [27896057] (imputed)	N
985	chr3	52558007	52558008	rs13303	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p21.1		rs13303-T	0.43	9E-28		10.93	z score increase	Affymetrix [9061022] (imputed)	N
985	chr3	52558007	52558008	rs13303	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3p21.1		rs13303-C	0.538723	2E-10		0.0203098	[0.014-0.027] unit increase	Illumina [13479178] (imputed)	N
985	chr3	52558007	52558008	rs13303	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p21.1		rs13303-?	NR	7E-15				NR [9705931] (imputed)	N
985	chr3	52558007	52558008	rs13303	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	3p21.1	STAB1	rs13303-C	0.568688714615711	3E-21		0.057242386	unit increase	Illumina [265780]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3p21.1	STAB1	rs13303-T	0.4365	5E-14		0.0228	[0.017-0.029] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	3p21.1	STAB1	rs13303-T	0.4338	2E-14		0.0242	[0.018-0.03] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	3p21.1	STAB1	rs13303-T	0.4554	7E-7		0.0151	[0.0092-0.021] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	3p21.1	STAB1	rs13303-T	0.4337	2E-7		0.017	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3p21.1	STAB1	rs13303-T	0.4454	5E-18		0.0187	[0.014-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52558007	52558008	rs13303	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3p21.1	STAB1	rs13303-T	0.4338	2E-19		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
985	chr3	52559704	52559705	rs11709284	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3p21.1	NR	rs11709284-A	0.5551	4E-10		0.001386	[0.00094-0.00183] unit increase	Affymetrix [NR] (imputed)	N
986	chr3	52561778	52561779	rs11711421	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs11711421-T	NR	1E-8		0.9605		Affymetrix [9869154] (imputed)	N
986	chr3	52563717	52563718	rs4687625	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs4687625-T	NR	2E-12		7.04	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
986	chr3	52565099	52565100	rs6778735	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	3p21.1		rs6778735-?	NR	6E-11				NR [7857346] (imputed)	N
986	chr3	52565099	52565100	rs6778735	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NT5DC2	rs6778735-T	NR	3E-15		7.894	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
986	chr3	52566064	52566065	rs4282054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.1	NT5DC2	rs4282054-T	NR	4E-11		0.0207245	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
986	chr3	52566064	52566065	rs4282054	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	NT5DC2	rs4282054-T	NR	7E-12		0.0215377	[0.015-0.028] unit increase	Affymetrix [127266] (imputed)	N
986	chr3	52566064	52566065	rs4282054	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p21.1	NT5DC2, STAB1	rs4282054-?	NR	5E-6		0.0255	[0.015-0.036] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
986	chr3	52566819	52566820	rs12489732	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NT5DC2	rs12489732-A	NR	2E-11		6.688	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
986	chr3	52566913	52566914	rs7614981	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p21.1		rs7614981-C	0.45	1E-19		9.09	z score increase	Affymetrix [9061022] (imputed)	N
986	chr3	52566913	52566914	rs7614981	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p21.1	NR	rs7614981-C	0.4691	1E-17				NR [9056863] (imputed)	N
986	chr3	52567013	52567014	rs12489828	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	NT5DC2	rs12489828-T	NR	8E-11		0.019687362	[0.014-0.026] unit increase	Affymetrix [NR]	N
986	chr3	52567013	52567014	rs12489828	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	NT5DC2	rs12489828-T	0.54	2E-6		0.0173	[0.01-0.024] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	NT5DC2	rs12489828-T	0.5401	3E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	NT5DC2	rs12489828-T	0.5401	1E-6	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	NT5DC2	rs12489828-T	0.5401	7E-7		0.0179	[0.011-0.025] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	NT5DC2	rs12489828-T	0.5401	4E-7	(women)	0.0229	[0.014-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p21.1	NT5DC2	rs12489828-T	0.5323	2E-15		0.02848597	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p21.1	NR	rs12489828-T	0.549420159198893	4E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p21.1	NR	rs12489828-T	0.549420159198893	2E-11		0.022019453	units decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5488	7E-11	(EA)	0.0227	[0.016-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5486	3E-10	(EA, women)	0.0294	[0.02-0.038] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5425	1E-9	(women)	0.0277	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5409	3E-10		0.0215	[0.015-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5485	6E-10	(EA,women)	0.0273	[0.019-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567013	52567014	rs12489828	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	NT5DC2	rs12489828-T	0.5485	1E-8	(EA)	0.0197	[0.013-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52567187	52567188	rs28661185	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p21.1		rs28661185-T	0.46	3E-21		9.47	z score increase	Affymetrix [9061022] (imputed)	N
986	chr3	52567294	52567295	rs112873973	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p21.1	NR	rs112873973-G	NR	4E-6		0.731	[0.42-1.05] SD units increase	NR [10700000] (imputed)	N
986	chr3	52567616	52567617	rs66782572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p21.1		rs66782572-G	NR	2E-21		0.0153	[0.012-0.018] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p21.1	NT5DC2	rs66782572-G	0.536639	2E-18		0.0194943	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p21.1	NT5DC2	rs66782572-G	0.53661	9E-18		0.019079676	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.1	NR	rs66782572-G	0.532687	7E-28				Affymetrix, Illumina [24653286] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p21.1	NR	rs66782572-G	0.53812	7E-26		0.020881	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.1	NR	rs66782572-G	0.533408	5E-27				Affymetrix, Illumina [24558453] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p21.1	NR	rs66782572-G	0.538025	4E-25		0.020609	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
986	chr3	52567616	52567617	rs66782572	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.1	NT5DC2	rs66782572-A		2E-14		0.017	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
986	chr3	52567616	52567617	rs66782572	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3p21.1	NT5DC2	rs66782572-G	0.5386	6E-9		0.02063169	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
986	chr3	52567967	52567968	rs541612392	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	3p21.1	NR	rs541612392-A	0.87372	7E-7		1.2233913	[1.13-1.32]	Affymetrix [16309199] (imputed)	N
986	chr3	52568804	52568805	rs7639267	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs7639267-?	NR	6E-27				Affymetrix [~ 8270000] (imputed)	N
986	chr3	52568804	52568805	rs7639267	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p21.1		rs7639267-?	NR	6E-15				NR [~ 8900000] (imputed)	N
986	chr3	52569479	52569480	rs6774097	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p21.1		rs6774097-?	NR	2E-10				NR [~ 8900000] (imputed)	N
986	chr3	52575830	52575831	rs1133415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.1		rs1133415-?	NR	1E-29				NR [~ 8900000] (imputed)	N
986	chr3	52584714	52584715	rs2878628	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	SMIM4, PBRM1	rs2878628-A	NR	1E-8		0.016829833	[0.011-0.023] unit decrease	Affymetrix [NR]	N
986	chr3	52584786	52584787	rs2251219	20081856	McMahon FJ	2010-01-17	Nat Genet	Meta-analysis of genome-wide association data identifies a risk locus for major mood disorders on 3p21.1.	Major mood disorders	6,686 European ancestry cases, 9,068 European ancestry controls	1,930 European ancestry cases, 2,747 European ancestry controls	3p21.1	PBRM1	rs2251219-?	0.59	2E-9		1.14	[1.09-1.18]	Affymetrix, Illumina, Perlegen [~ 2100000] (imputed)	N
986	chr3	52599791	52599792	rs55946513	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBL2	5,363 Icelandic ancestry individuals	NA	3p21.1		rs55946513-T	0.08124	1E-29		0.375557	[0.31-0.44] unit decrease	Illumina [7506463] (imputed)	N
986	chr3	52599791	52599792	rs55946513	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3p21.1	PBRM1	rs55946513-C	0.93413	3E-8		1.04	[1.01-1.06]	Affymetrix [14661600] (imputed)	N
986	chr3	52607510	52607511	rs35240333	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.1	NR	rs35240333-T	0.120978	3E-12				Affymetrix, Illumina [19872809] (imputed)	N
986	chr3	52609242	52609242	rs140838723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	SMIM4, PBRM1	rs140838723-CCAAA	NR	5E-13		0.0208368	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
986	chr3	52609242	52609242	rs140838723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.1	SMIM4, PBRM1	rs140838723-CCAAA	NR	6E-10		0.019801	[0.014-0.026] unit decrease	Affymetrix [323858] (imputed)	N
986	chr3	52609242	52609242	rs140838723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	SMIM4, PBRM1	rs140838723-CCAAA	NR	1E-13		0.0214569	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
986	chr3	52609242	52609242	rs140838723	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	SMIM4, PBRM1	rs140838723-CCAAA	NR	5E-11		0.021033	[0.015-0.027] unit decrease	Affymetrix [127266] (imputed)	N
986	chr3	52618940	52618941	rs7614498	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	3p21.1	NR	rs7614498-A	0.568	2E-9		1.07229	[1.05-1.1]	Affymetrix, Illumina [7549318] (imputed)	N
986	chr3	52620762	52620763	rs553016583	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p21.1	PBRM1	rs553016583-A	0.778967	2E-9		0.01860167	[0.013-0.025] unit increase	Affymetrix [93095623] (imputed)	N
986	chr3	52622085	52622086	rs2590838	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p21.1	NR	rs2590838-G	NR	1E-6		0.012	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs2590838-G	0.48850000000000005	6E-8	(EA, women)	0.0276	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs2590838-G	0.48850000000000005	2E-9	(EA)	0.0235	[0.016-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	PBRM1	rs2590838-G	0.48960000000000004	5E-6	(EA, women)	0.0264	[0.015-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	PBRM1	rs2590838-G	0.48850000000000005	5E-8	(EA)	0.0242	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs2590838-?	0.48850000000000005	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs2590838-?	0.48850000000000005	1E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52622085	52622086	rs2590838	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	3p21.1	GNL3	rs2590838-G	0.51	2E-13		0.03	[0.022-0.038] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
986	chr3	52624386	52624387	rs73078824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs73078824-T	NR	3E-10		0.0202707	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
986	chr3	52624386	52624387	rs73078824	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs73078824-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
986	chr3	52626442	52626443	rs2336147	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	3p21.1	ITIH1	rs2336147-T	0.498	4E-13		1.07004	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
986	chr3	52628055	52628056	rs2577831	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3p21.1	PBRM1	rs2577831-C	0.522457	4E-15		0.00415017	[0.0031-0.0052] unit increase	Affymetrix [13995440] (imputed)	N
986	chr3	52628055	52628056	rs2577831	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p21.1	STAB1, NT5DC2, SMIM4, PBRM1, GNL3, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, RP5-966M1.6	rs2577831-?		1E-10				NR [7428630] (imputed)	N
986	chr3	52628055	52628056	rs2577831	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3p21.1	NR	rs2577831-A	0.478995	1E-8		0.0375766	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
986	chr3	52628055	52628056	rs2577831	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.1	NR	rs2577831-?	NR	3E-14		1.0662004	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
986	chr3	52628055	52628056	rs2577831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p21.1		rs2577831-?	NR	2E-25				NR [~ 8900000] (imputed)	N
986	chr3	52628055	52628056	rs2577831	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.1	PBRM1	rs2577831-C	NR	2E-13		1.0695187	[1.05-1.09]	Illumina [6627481] (imputed)	N
986	chr3	52628055	52628056	rs2577831	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.1	PBRM1	rs2577831-A	NR	9E-10	(EA)	1.0689	[1.05-1.09]	Illumina [6627481] (imputed)	N
986	chr3	52628055	52628056	rs2577831	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p21.1	GLT8D1, GLYCTK, GNL3, NEK4, PBRM1, SFMBT1, SPCS1	rs2577831-C	NR	5E-13		1.0683761	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
986	chr3	52637485	52637486	rs2276824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	PBRM1	rs2276824-C	NR	3E-19		0.0254101	[0.02-0.031] unit increase	Affymetrix [319769] (imputed)	N
986	chr3	52637485	52637486	rs2276824	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs2276824-C	NR	3E-20		0.0260331	[0.02-0.032] unit increase	Affymetrix [319769] (imputed)	N
986	chr3	52637485	52637486	rs2276824	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3p21.1		rs2276824-G	0.43	4E-8		0.085	[0.056-0.114] unit increase	Illumina [16607452] (imputed)	N
986	chr3	52637485	52637486	rs2276824	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p21.1	NR	rs2276824-C	0.46	1E-41		0.024	[0.02-0.028] unit increase	Affymetrix [2446094] (imputed)	N
986	chr3	52637485	52637486	rs2276824	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p21.1	NR	rs2276824-C	0.46	5E-8				Affymetrix [2446094] (imputed)	N
986	chr3	52637485	52637486	rs2276824	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	PBRM1	rs2276824-C	0.4352	9E-6	(women)	0.0215	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52637485	52637486	rs2276824	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	PBRM1	rs2276824-C	0.4352	2E-7		0.0193	[0.012-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52637485	52637486	rs2276824	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PBRM1	rs2276824-C	0.4342	3E-11	(EA)	0.0236	[0.017-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52637485	52637486	rs2276824	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PBRM1	rs2276824-C	0.4332	7E-11		0.0224	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52637485	52637486	rs2276824	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PBRM1	rs2276824-C	0.4322	4E-9	(EA, women)	0.028	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52637485	52637486	rs2276824	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PBRM1	rs2276824-C	0.4283	1E-8	(women)	0.0265	[0.017-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52637630	52637631	rs34341044	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs34341044-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
986	chr3	52648264	52648265	rs9879090	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p21.1		rs9879090-C	NR	5E-19		0.0153	[0.012-0.019] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
986	chr3	52648264	52648265	rs9879090	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p21.1	PBRM1	rs9879090-C	0.546466	6E-19		0.019733138	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
986	chr3	52648264	52648265	rs9879090	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	PBRM1	rs9879090-T	NR	2E-12		7.075	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
986	chr3	52648264	52648265	rs9879090	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p21.1	NEK4	rs9879090-T	0.45416	2E-9		6.03	z score increase	NR [10847151] (imputed)	N
986	chr3	52649747	52649748	rs13083798	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p21.1	NR	rs13083798-G	0.488944	3E-20		0.018297	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
986	chr3	52649747	52649748	rs13083798	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p21.1	C1orf106, KIF21B, CACNA1S	rs13083798-?		2E-8				NR [7428630] (imputed)	N
986	chr3	52649747	52649748	rs13083798	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p21.1	GNL3	rs13083798-A	0.5137	5E-8		0.012325772	[0.0079-0.0167] unit decrease	Affymetrix [11514463] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4938	6E-10		0.0216	[0.015-0.028] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4905	4E-11	(EA)	0.0242	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4905	2E-11	(EA, women)	0.0325	[0.023-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4938	1E-8		0.0229	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4909	5E-10	(EA,women)	0.0335	[0.023-0.044] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	PBRM1	rs13083798-A	0.4905	3E-9	(EA)	0.0252	[0.017-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-?	0.4938	4E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-?	0.4905	5E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	PBRM1	rs13083798-?	0.4905	1E-10	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	PRBM1	rs13083798-A	0.4986	7E-6	(women)	0.0204	[0.012-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p21.1	PRBM1	rs13083798-A	0.4986	1E-8		0.0198	[0.013-0.027] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
986	chr3	52649747	52649748	rs13083798	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PRBM1	rs13083798-A	0.4929	7E-11		0.0218	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52649747	52649748	rs13083798	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PRBM1	rs13083798-A	0.4903	4E-11	(EA)	0.0227	[0.016-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52649747	52649748	rs13083798	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PRBM1	rs13083798-A	0.4899	2E-9	(women)	0.0268	[0.018-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52649747	52649748	rs13083798	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	PRBM1	rs13083798-A	0.4894	5E-10	(EA, women)	0.0283	[0.019-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
986	chr3	52662490	52662490	rs36059845	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	3p21.1		rs36059845-A	0.62591	2E-9		0.0263561	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
986	chr3	52668118	52668119	rs2083180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs2083180-T	NR	6E-13		0.0208524	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
986	chr3	52668118	52668119	rs2083180	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs2083180-T	NR	1E-8		0.0165792	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
986	chr3	52670773	52670773	rs567776784	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p21.1		rs567776784-CAAAAA	NR	2E-10		0.0139	[0.0096-0.0182] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
986	chr3	52670773	52670773	rs567776784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	PBRM1	rs567776784-CAAAAA	NR	9E-10		0.0175718	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
986	chr3	52670773	52670773	rs567776784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.1	PBRM1	rs567776784-CAAAAA	NR	2E-8		0.0180055	[0.012-0.024] unit decrease	Affymetrix [323858] (imputed)	N
986	chr3	52670773	52670773	rs567776784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs567776784-CAAAAA	NR	1E-10		0.0185841	[0.013-0.024] unit decrease	Affymetrix [319769] (imputed)	N
986	chr3	52670773	52670773	rs567776784	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	PBRM1	rs567776784-CAAAAA	NR	2E-9		0.0191688	[0.013-0.025] unit decrease	Affymetrix [127266] (imputed)	N
986	chr3	52671069	52671070	rs60311166	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p21.1	NR	rs60311166-G	NR	5E-6		0.7233	[0.41-1.04] SD units increase	NR [10700000] (imputed)	N
986	chr3	52676064	52676065	rs11719685	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.1	PBRM1	rs11719685-T		2E-10		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
986	chr3	52684364	52684365	rs9864989	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Systolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p21.1	NR	rs9864989-?	NR	3E-6		2.77	[1.62-3.92] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
986	chr3	52684364	52684365	rs9864989	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Hypertension	18,440 African individuals	2,375 African individuals, 3,718 Korean ancestry individuals, 9,348 European ancestry individuals, 3,445 Hispanic individuals	3p21.1	NR	rs9864989-?	NR	5E-6		0.3463	[0.20-0.50] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
986	chr3	52684364	52684365	rs9864989	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Diastolic blood pressure	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	3p21.1	NR	rs9864989-?	NR	4E-6		1.6431	[1.64-1.64] unit increase	Affymetrix, Illumina [at least 30072738] (imputed)	N
986	chr3	52687565	52687566	rs7612511	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs7612511-?	NR	1E-32				Affymetrix [~ 8270000] (imputed)	N
987	chr3	52693365	52693366	rs35198201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	PBRM1	rs35198201-C	NR	2E-11		0.0325372	[0.023-0.042] unit decrease	Affymetrix [319769] (imputed)	N
987	chr3	52693365	52693366	rs35198201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs35198201-C	NR	5E-11		0.0319616	[0.022-0.042] unit decrease	Affymetrix [319769] (imputed)	N
987	chr3	52693365	52693366	rs35198201	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	PBRM1	rs35198201-C	NR	6E-12		0.0338678	[0.024-0.044] unit decrease	Affymetrix [321169] (imputed)	N
987	chr3	52700906	52700907	rs34218707	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	NR	rs34218707-C	0.423	2E-48	(Inter-alpha-trypsin inhibitor heavy chain H1, ITIH1.7955.195.3)	0.41	[0.35-0.47] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52706723	52706724	rs12493107	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	PBRM1	rs12493107-T	0.386	8E-13	(AP-4 complex subunit mu-1, AP4M1.10076.1.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
987	chr3	52718183	52718188	rs565817433	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.1	PBRM1	rs565817433-C	0.431153	6E-11	(females)	0.02074	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
987	chr3	52718183	52718188	rs565817433	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.1	PBRM1	rs565817433-C	0.431153	1E-11		0.01312	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
987	chr3	52718183	52718188	rs565817433	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.1	PBRM1	rs565817433-C	0.431153	9E-8		0.01066	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
987	chr3	52718183	52718188	rs565817433	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p21.1	PBRM1	rs565817433-C	0.431153	5E-7	(females)	0.01704	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
987	chr3	52718279	52718280	rs10865974	23092984	Goes FS	2012-10-23	Transl Psychiatry	Genome-wide association of mood-incongruent psychotic bipolar disorder.	Bipolar disorder with mood-incongruent psychosis	2,196 European and other ancestry cases, 8,148 European and other ancestry controls	NA	3p21.1	GNL3, PBRM1	rs10865974-?	NR	2E-6		1.19	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
987	chr3	52719815	52719816	rs10933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.1	NR	rs10933-C	0.549804	2E-20				Affymetrix, Illumina [22063850] (imputed)	N
987	chr3	52719815	52719816	rs10933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p21.1	NR	rs10933-C	0.547934	2E-22		0.020045	[0.016-0.024] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
987	chr3	52719815	52719816	rs10933	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p21.1		rs10933-?	NR	4E-29				NR [~ 8900000] (imputed)	N
987	chr3	52720079	52720080	rs1108842	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	GNL3	rs1108842-A	NR	8E-9		0.016819207	[0.011-0.023] unit decrease	Affymetrix [NR]	N
987	chr3	52720079	52720080	rs1108842	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3p21.1	GNL3	rs1108842-C	0.50	1E-13		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina [NR] (imputed)	N
987	chr3	52721304	52721305	rs11177	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	3p21.1	NR	rs11177-A	0.38	7E-8		1.0684	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
987	chr3	52721304	52721305	rs11177	22763110	Zeggini E	2012-07-03	Lancet	Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.	Osteoarthritis	7,410 European ancestry cases, 11,009 European ancestry controls	7,473 European ancestry cases, 42,938 European ancestry controls	3p21.1	GNL3, GLT8D1	rs11177-A	0.38	5E-9		1.09	[1.06-1.12]	Illumina [485491]	N
987	chr3	52727674	52727675	rs34216132	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	3p21.1	GNL3	rs34216132-C	0.00333	4E-9		0.17	[0.11-0.22] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
987	chr3	52728803	52728804	rs6976	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	3p21.1	GLT8D1	rs6976-T	0.37	2E-10		1.0509558	[1.035010943-1.067146219]	Affymetrix, Illumina [up to 17000000] (imputed)	N
987	chr3	52728803	52728804	rs6976	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	3p21.1	NR	rs6976-T	0.37	4E-8		1.06922	[NR]	Affymetrix, Illumina [11554240] (imputed)	N
987	chr3	52729780	52729780	rs528266117	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.1	GLT8D1	rs528266117-C		7E-9		24.445	unit decrease	Affymetrix [at least 2696785] (imputed)	N
987	chr3	52729780	52729780	rs528266117	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.1	GLT8D1	rs528266117-C		1E-8		15.799	unit decrease	Affymetrix [at least 2696785] (imputed)	N
987	chr3	52733105	52733106	rs6765687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	GLT8D1	rs6765687-T	NR	8E-10		0.0197112	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
987	chr3	52733105	52733106	rs6765687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	GLT8D1	rs6765687-T	NR	5E-10		0.0199918	[0.014-0.026] unit increase	Affymetrix [319769] (imputed)	N
987	chr3	52733105	52733106	rs6765687	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	GLT8D1	rs6765687-T	NR	6E-11		0.0212169	[0.015-0.028] unit increase	Affymetrix [321169] (imputed)	N
987	chr3	52733105	52733106	rs6765687	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	3p21.1	NR	rs6765687-T		5E-6	(Modelling analysis)	1.07	[1.04-1.11]	NR [1252901] (imputed)	N
987	chr3	52737324	52737325	rs145385663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.1	GLT8D1	rs145385663-C	NR	2E-9		0.0468961	[0.032-0.062] unit increase	Affymetrix [323858] (imputed)	N
987	chr3	52737324	52737325	rs145385663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	GLT8D1	rs145385663-C	NR	1E-9		0.0479389	[0.033-0.063] unit increase	Affymetrix [127266] (imputed)	N
987	chr3	52737324	52737325	rs145385663	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	GLT8D1	rs145385663-C	NR	2E-10		0.045535	[0.032-0.06] unit increase	Affymetrix [321114] (imputed)	N
987	chr3	52745086	52745087	rs11235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	3p21.1		rs11235-T	0.544437	2E-8		0.0221257	[0.014-0.03] unit increase	NR [11722792] (imputed)	N
987	chr3	52745086	52745087	rs11235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	3p21.1		rs11235-T	0.544437	2E-9		0.0236933	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
987	chr3	52745086	52745087	rs11235	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3p21.1		rs11235-T	0.544451	1E-8		0.0224151	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
987	chr3	52745086	52745087	rs11235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3p21.1	NEK4	rs11235-C	NR	2E-14		0.0239983	[0.018-0.03] unit increase	Affymetrix [323858] (imputed)	N
987	chr3	52745086	52745087	rs11235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	NEK4	rs11235-C	NR	3E-15		0.0247348	[0.019-0.031] unit increase	Affymetrix [127266] (imputed)	N
987	chr3	52745086	52745087	rs11235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p21.1	NR	rs11235-T	0.5396	1E-36		0.0222	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
987	chr3	52745086	52745087	rs11235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	3p21.1	NR	rs11235-T	0.5396	1E-36		0.0222	[0.019-0.026] unit decrease	NR [~ 27400000] (imputed)	N
987	chr3	52745086	52745087	rs11235	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs11235-T	NR	4E-10		6.246	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
987	chr3	52745086	52745087	rs11235	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	NEK4	rs11235-T	NR	2E-8		0.016822126	[0.011-0.023] unit increase	Affymetrix [NR]	N
987	chr3	52747020	52747021	rs138492110	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs138492110-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
987	chr3	52755591	52755592	rs11130319	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	3p21.1		rs11130319-A	0.59	7E-9		0.0612	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
987	chr3	52755591	52755592	rs11130319	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p21.1	NEK4	rs11130319-T	0.534	4E-11	(Japanese)	0.023	[0.017-0.029] unit increase	Illumina [6108953] (imputed)	N
987	chr3	52757045	52757046	rs114796738	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.1	NEK4	rs114796738-T	NR	8E-11		0.044783	[0.031-0.058] unit increase	Affymetrix [321114] (imputed)	N
987	chr3	52757045	52757046	rs114796738	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs114796738-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
987	chr3	52760984	52760985	rs530829730	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	NR	rs530829730-C	0.475	6E-106	(Janus kinase and microtubule-interacting protein 3, JAKMIP3.9068.17.3)	0.56	[0.5-0.62] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52769152	52769153	rs77464914	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD80 on monocyte	2,850 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p21.1		rs77464914-C	0.01545	5E-9		0.6985	[0.46-0.93] unit decrease	Illumina [17914520] (imputed)	N
987	chr3	52770309	52770310	rs11130324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.1	NEK4	rs11130324-G	NR	6E-12		0.0212007	[0.015-0.027] unit decrease	Affymetrix [321114] (imputed)	N
987	chr3	52770309	52770310	rs11130324	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3p21.1	NEK4	rs11130324-G	NR	2E-11		0.0208491	[0.015-0.027] unit decrease	Affymetrix [323858] (imputed)	N
987	chr3	52797667	52797668	rs80176849	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p21.1	NR	rs80176849-C	0.008291	5E-11		0.07281	[0.051-0.095] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
987	chr3	52797667	52797668	rs80176849	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p21.1		rs80176849-?	NR	9E-11				NR [~ 8900000] (imputed)	N
987	chr3	52807585	52807586	rs57789542	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p21.1	NR	rs57789542-C	NR	6E-6		0.7447	[0.42-1.07] SD units increase	NR [10700000] (imputed)	N
987	chr3	52807735	52807736	rs11717836	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.1	NR	rs11717836-A	0.416501	1E-9		0.03889731	[0.026-0.051] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
987	chr3	52809192	52809193	rs3755799	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	ITIH1	rs3755799-A	NR	1E-8		5.732	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
987	chr3	52809524	52809525	rs2019065	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	NEK4	rs2019065-C	0.392	2E-16	(Gap junction alpha-1 protein, GJA1.9937.7.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52814255	52814256	rs2302417	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	3p21.1	ITIH1	rs2302417-A	NR	6E-11		0.932	[0.913-0.952]	Illumina [3742365] (imputed)	N
987	chr3	52814255	52814256	rs2302417	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs2302417-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
987	chr3	52814255	52814256	rs2302417	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3p21.1	NISCH, STAB1, NT5DC2, SMIM4, PBRM1, GNL3, SNORD19, SNORD19B, SNORD69, GLT8D1, SPCS1, NEK4, ITIH1, ITIH3, ITIH4, MUSTN1, TMEM110-MUSTN1, TMEM110	rs2302417-T	0.51	7E-11		1.07616		NR [9372253] (imputed)	N
987	chr3	52814255	52814256	rs2302417	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.1	ITIH1	rs2302417-A	0.4666	2E-8		0.14	[0.091-0.189] mmHg increase	Affymetrix [NR] (imputed)	N
987	chr3	52814255	52814256	rs2302417	28072414	Charney AW	2017-01-10	Transl Psychiatry	Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder.	Bipolar disorder	13,903 European ancestry cases, 19,279 European ancestry controls.	NA	3p21.1	NR	rs2302417-?	NR	3E-9		1.11		Affymetrix, Illumina [8837380] (imputed)	N
987	chr3	52815904	52815905	rs2710323	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs2710323-?	NR	7E-13				NR [2625067]	N
987	chr3	52815904	52815905	rs2710323	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Bipolar disorder (MTAG)	1,450,972 European ancestry individuals	NA			rs2710323-?	NR	3E-13				NR [2625067]	N
987	chr3	52815904	52815905	rs2710323	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Bipolar disorder (MTAG)	65,682 individuals	NA		NR	rs2710323-?		4E-12				NR [520857]	N
987	chr3	52815904	52815905	rs2710323	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA		NR	rs2710323-C	0.473076	2E-8		0.0369706	[0.024-0.05] unit increase	Affymetrix [17914406] (imputed)	N
987	chr3	52815904	52815905	rs2710323	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA		ITIH1	rs2710323-?	NR	9E-10		0.012100469	[0.0082-0.016] unit decrease	NR [7306098]	N
987	chr3	52815904	52815905	rs2710323	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals		NR	rs2710323-T	NR	2E-7		0.013	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
987	chr3	52815904	52815905	rs2710323	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA		NR	rs2710323-C	NR	4E-11		0.01585	[0.011-0.021] unit decrease	Affymetrix [10847151] (imputed)	N
987	chr3	52815904	52815905	rs2710323	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA		NR	rs2710323-T	0.472032	3E-9		5.95	z score increase	NR [10847151] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men		PBRM1	rs2710323-T	0.5112	5E-8	(EA, women)	0.0276	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men		ITIH1	rs2710323-T	0.5112	4E-9	(EA)	0.0235	[0.016-0.031] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men		PBRM1	rs2710323-T	0.5122	8E-7	(EA, women)	0.0284	[0.017-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men		PBRM1	rs2710323-T	0.5112	2E-7	(EA)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men		PBRM1	rs2710323-?	0.5112	6E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men		ITIH1	rs2710323-?	0.5112	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA		NR	rs2710323-T	0.508618171719219	6E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA		NR	rs2710323-T	0.508618171719219	7E-12		0.022739816	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
987	chr3	52815904	52815905	rs2710323	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals		ITIH1	rs2710323-C	0.491	9E-6		0.013	[0.0073-0.0187] kg/m2 increase	Affymetrix, Illumina [2550021]	N
987	chr3	52815904	52815905	rs2710323	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls		ITIH1	rs2710323-T	0.42	5E-6		1.14	[NR]	Illumina [7594768] (imputed)	N
987	chr3	52815904	52815905	rs2710323	24166486	Sleiman P	2013-10-29	Sci Rep	GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.	Schizophrenia, schizoaffective disorder or bipolar disorder	11,985 European, African American, Asian, other and unknown ancestry schizophrenia cases, 377 European, African American, Asian, other and unknown ancestry schizoaffective disorder cases, 1,032 bipolar disorder cases, 34,676 European, African American, Asian, other and unknown ancestry controls	2652 individuals		ITIH1	rs2710323-?	0.466	3E-8				Affymetrix, Illumina [NR] (imputed)	N
987	chr3	52816839	52816840	rs143918452	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	3p21.1	ALAS1, TLR9, DNAH1, BAP1, PHF7, NISCH, STAB1, ITIH3, ITIH4	rs143918452-A	0.004	3E-8		1.4705882	[1.28-1.67]	Illumina [11933700] (imputed)	N
987	chr3	52817149	52817149	rs756102064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p21.1	NR	rs756102064-T	0.09149499999999999	2E-14		0.0106323	[0.0078-0.0135] unit increase	Affymetrix [16582909] (imputed)	N
987	chr3	52817149	52817149	rs756102064	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p21.1	NR	rs756102064-T	0.09149499999999999	8E-8		0.00847457	[0.0053-0.0116] unit increase	Affymetrix [16582965] (imputed)	N
987	chr3	52817164	52817164	rs199729098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.1	NR	rs199729098-AC	NR	2E-10		0.0266	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
987	chr3	52817164	52817164	rs199729098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.1	NR	rs199729098-AC	NR	6E-11		0.0286	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
987	chr3	52817164	52817164	rs199729098	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.1	NR	rs199729098-AC	NR	2E-10		0.028	[0.019-0.037] unit increase	Affymetrix [9000000] (imputed)	N
987	chr3	52817674	52817675	rs3774354	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	3p21.1		rs3774354-A	0.3712	1E-16		1.0976813	[1.07363749-1.122263461]	Affymetrix, Illumina [NR] (imputed)	N
987	chr3	52817674	52817675	rs3774354	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	3p21.1	NR	rs3774354-A	0.36	1E-11		1.06	[1.04-1.07]	Affymetrix, Illumina [up to 17000000] (imputed)	N
987	chr3	52817777	52817778	rs3774355	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	3p21.1	NR	rs3774355-A	0.36	8E-14		1.09	[1.07-1.12]	Affymetrix, Illumina [up to 17000000] (imputed)	N
987	chr3	52820980	52820981	rs678	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CDHR3	5,363 Icelandic ancestry individuals	NA	3p21.1		rs678-T	0.385	2E-12		0.1351	[0.098-0.173] unit decrease	Illumina [7506463] (imputed)	N
987	chr3	52820980	52820981	rs678	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C15orf48	5,347 Icelandic ancestry individuals	NA	3p21.1		rs678-T	0.385	9E-48		0.252253	[0.22-0.29] unit increase	Illumina [7506463] (imputed)	N
987	chr3	52820980	52820981	rs678	30374069	Styrkarsdottir U	2018-10-29	Nat Genet	Meta-analysis of Icelandic and UK data sets identifies missense variants in SMO, IL11, COL11A1 and 13 more new loci associated with osteoarthritis.	Osteoarthritis (hip)	17,151 European ancestry cases, 596,639 European ancestry controls	NA	3p21.1	ITIH1	rs678-T	NR	2E-9	(additive)	1.08	[1.05-1.11]	Affymetrix, Illumina [11554240] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	7E-9	(LHCGR, 14634_13_3)	0.14677097	[0.097-0.196] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	7E-39	(ITIH3, 7145_1_3)	0.31147063	[0.27-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	5E-160	(ITIH1, 7955_195_3)	0.649183	[0.6-0.69] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	5E-14	(ICT1, 6380_23_3)	0.18893638	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	3E-9	(TXNDC12, 4815_25_3)	0.15233305	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	3E-321	(SIGIRR, 8326_63_3)	0.8818632	[0.84-0.92] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	3E-29	(NMES1, 6406_3_3)	0.27021828	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	2E-9	(SEMA3G, 5628_21_3)	0.1487845	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	2E-42	(RBL2, 13565_2_3)	0.3290182	[0.28-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	2E-25	(JAKMIP3, 9068_17_3)	0.2545946	[0.21-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	1E-9	(NPPB, 10387_1_3)	0.15123193	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	1E-11	(ZNF334, 12763_69_3)	0.17418677	[0.12-0.22] unit increase	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs678-A	0.61390625	1E-11	(MST1, 4407_10_1)	0.17437157	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
987	chr3	52820980	52820981	rs678	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs678-T	0.359	2E-16	(SUN domain-containing protein 3, SUN3.8852.10.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52820980	52820981	rs678	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs678-T	0.359	1E-40	(Arylamine N-acetyltransferase 1, NAT1.12632.14.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
987	chr3	52821010	52821011	rs1042779	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs1042779-G	0.369	3E-285	(Janus kinase and microtubule-interacting protein 3, JAKMIP3.9068.17.3)	0.79	[0.75-0.83] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52821010	52821011	rs1042779	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs1042779-G	0.369	2E-312	(Single Ig IL-1-related receptor, SIGIRR.8326.63.3)	0.81	[0.77-0.85] unit increase	Affymetrix [10572788] (imputed)	N
987	chr3	52821010	52821011	rs1042779	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs1042779-G	0.369	2E-171	(Inter-alpha-trypsin inhibitor heavy chain H1, ITIH1.7955.195.3)	0.65	[0.61-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
987	chr3	52821010	52821011	rs1042779	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	3p21.1	ITIH1, NEK4	rs1042779-A	0.63	2E-7		1.19	[1.11-1.27]	Affymetrix, Illumina [2366197] (imputed)	N
987	chr3	52821176	52821177	rs2286798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPB	5,360 Icelandic ancestry individuals	NA	3p21.1		rs2286798-C	0.3849	5E-12		0.133352	[0.096-0.171] unit decrease	Illumina [7506463] (imputed)	N
987	chr3	52821176	52821177	rs2286798	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH1	5,363 Icelandic ancestry individuals	NA	3p21.1		rs2286798-C	0.3849	4E-277		0.625022	[0.59-0.66] unit decrease	Illumina [7506463] (imputed)	N
987	chr3	52821176	52821177	rs2286798	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	ITIH1	rs2286798-C	0.362	1E-27	(Normal mucosa of esophagus-specific gene 1 protein, NMES1.6406.3.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
988	chr3	52822508	52822509	rs2239550	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ZNF334	5,362 Icelandic ancestry individuals	NA	3p21.1		rs2239550-C	0.3984	5E-17		0.159015	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
988	chr3	52822508	52822509	rs2239550	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein JAKMIP3	5,342 Icelandic ancestry individuals	NA	3p21.1		rs2239550-C	0.3984	3E-33		0.212071	[0.18-0.25] unit increase	Illumina [7506463] (imputed)	N
988	chr3	52822920	52822921	rs2300149	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	ITIH1	rs2300149-C	0.6133	3E-10		0.0231	[0.016-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
988	chr3	52822920	52822921	rs2300149	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p21.1	ITIH1	rs2300149-C	0.6133	1E-6		0.0208	[0.012-0.029] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
988	chr3	52822920	52822921	rs2300149	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p21.1	ITIH1	rs2300149-?	0.6133	1E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
988	chr3	52823125	52823126	rs2239549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.1	NR	rs2239549-A	0.379189978686569	2E-9		0.007222258	[0.0049-0.0096] unit decrease	NR [NR]	N
988	chr3	52823125	52823126	rs2239549	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.1	NR	rs2239549-A	0.379189978686569	3E-9		0.007630516	[0.0051-0.0102] unit decrease	NR [NR]	N
988	chr3	52823179	52823179	rs3216517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	ITIH1	rs3216517-CT	NR	7E-22		0.0274633	[0.022-0.033] unit decrease	Affymetrix [321114] (imputed)	N
988	chr3	52823179	52823179	rs3216517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	ITIH1	rs3216517-CT	NR	6E-21		0.0268673	[0.021-0.032] unit decrease	Affymetrix [321169] (imputed)	N
988	chr3	52830763	52830764	rs2240921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	ITIH3	rs2240921-T	NR	1E-11		0.029346	[0.021-0.038] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52830763	52830764	rs2240921	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	ITIH3	rs2240921-T	NR	3E-11		0.0287206	[0.02-0.037] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52831008	52831009	rs2240920	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p21.1	ITIH3	rs2240920-T	0.38	2E-12		0.017	[0.013-0.021] unit increase	Illumina [6108953] (imputed)	N
988	chr3	52831700	52831701	rs2240919	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	ITIH3	rs2240919-G	NR	3E-8		0.0170452	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
988	chr3	52831700	52831701	rs2240919	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3p21.1	ITIH3	rs2240919-C	0.658	5E-17		0.027	[0.021-0.033] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
988	chr3	52833218	52833219	rs2535629	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	3p21.1	ITIH3	rs2535629-A	0.33	2E-11				Affymetrix, Illumina [at least 918921] (imputed)	N
988	chr3	52833218	52833219	rs2535629	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or bipolar disorder	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 7,481 European ancestry bipolar disorder cases, 9,250 European ancestry bipolar disorder controls	322,580 individuals	3p21.1	ITIH3	rs2535629-A	0.33	1E-9				Affymetrix, Illumina [at least 918921] (imputed)	N
988	chr3	52833218	52833219	rs2535629	23453885	Smoller JW	2013-02-27	Lancet	Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.	Autism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)	6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder trio cases, 840 European ancestry Attention deficit-hyperactivity disorder cases, 1,947 European ancestry Attention defcit-hyperactivity disorder trio cases, 27,888 European ancestry controls	NA	3p21.1	ITIH3	rs2535629-?	0.651	3E-12		1.1	[1.07-1.12]	NR [1252901] (imputed)	N
988	chr3	52833804	52833805	rs3617	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p21.1	ITIH3	rs3617-A		3E-11		0.014	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3p21.1	ITIH3	rs3617-C	0.5342	2E-8		0.0175	[0.011-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	3p21.1	ITIH3	rs3617-C	0.5417	1E-8		0.0185	[0.012-0.025] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men, up to 164,238  African American, South Asian, East Asian and Hispanic ancestry men	up to 62,500 European ancestry men	3p21.1	ITIH3	rs3617-C	0.5472	3E-6		0.0139	[0.008-0.0198] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 130,976 European ancestry men	up to 62,500 European ancestry men	3p21.1	ITIH3	rs3617-C	0.5421	7E-8		0.0172	[0.011-0.023] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3p21.1	ITIH3	rs3617-C	0.5407	2E-12		0.0152	[0.011-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3p21.1	ITIH3	rs3617-C	0.542	5E-14		0.0175	[0.013-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
988	chr3	52833804	52833805	rs3617	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.1	ITIH3	rs3617-C	NR	1E-10	(EA)	1.073	[1.05-1.09]	Illumina [6627481] (imputed)	N
988	chr3	52833804	52833805	rs3617	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3p21.1	NT5DC2, PBRM1, GLT8D1, GNL3, ITIH1, ITIH3, ITIH4, MUSTN1, NEK4, NISCH, SMIM4, SPCS1, STAB1, TMEM110, TMEM110-MUSTN1	rs3617-?	NR	1E-11				Illumina [8000000] (imputed)	N
988	chr3	52833804	52833805	rs3617	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p21.1	BAP1, DNAH1, GLT8D1, GLYCTK, GLYCTK-AS1, GNL3, ITIH1, ITIH3, ITIH4, ITIH4-AS1, MIR135A1, MIR8064, MIRLET7G, MUSTN1, NEK4, NISCH, NT5DC2, PBRM1, PHF7, PPM1M, SEMA3G, SFMBT1, SMIM4, SNORD136, SNORD19, SNORD19B, SNORD69, SPCS1, STAB1, TLR9, TMEM110, TMEM110-MUSTN1, TNNC1, TWF2, WDR82	rs3617-?		3E-12		1.0752687	[1.05-1.09]	Affymetrix, Illumina [NR]	N
988	chr3	52833804	52833805	rs3617	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p21.1	ITIH3	rs3617-A	0.4523	2E-9		0.02130175	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
988	chr3	52833804	52833805	rs3617	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3p21.1	NR	rs3617-A	0.443	3E-6		0.145	mmHg increase	Illumina [242296]	N
988	chr3	52835353	52835354	rs736408	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBL2	5,363 Icelandic ancestry individuals	NA	3p21.1		rs736408-T	0.3754	1E-82		0.350603	[0.31-0.39] unit increase	Illumina [7506463] (imputed)	N
988	chr3	52835353	52835354	rs736408	21926972	Sklar P	2011-09-18	Nat Genet	Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.	Bipolar disorder	7,481 European ancestry cases, 9,250 European ancestry controls	4,496 European ancestry cases, 42,422 European ancestry controls	3p21.1	PHF7, NT5DC2, MUSTN1, LOC440957, GNL3, GLYCTK, GLT8D1, DNAH1, BAP1, ALAS1, ITIH3, ITIH4, PRKCD, ITIH1, NEK4, PBRM1, WDR82, TWF2, TNNC1, TMEM110, TLR9, SPCS1, SNORD69, NISCH, STAB1, SNORD19, SNORD19B, SFMBT1, SEMA3G, RFT1, PPM1M	rs736408-C	NR	2E-6		1.1	[NR]	Affymetrix, Illumina [2415422] (imputed)	N
988	chr3	52837282	52837286	rs146326248	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p21.1	ITIH3	rs146326248-T	0.542328	5E-11		0.014734072	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
988	chr3	52837792	52837793	rs4481150	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	3p21.1	NR	rs4481150-T	0.499	1E-13		0.08074938	[0.059-0.102] unit increase	NR [NR]	N
988	chr3	52837792	52837793	rs4481150	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Neuropsychiatric disorders	19,099 European ancestry attention deficit hyperactivity disorder cases, 18,381 European ancestry autism spectrum disorder cases, 20,352 European ancestry bipolar disorder cases, 170,756 European ancestry major depressive disorder cases, 33,640 European ancestry schizophrenia cases, 466,420 European ancestry controls	NA	3p21.1	NR	rs4481150-T	NR	4E-9		5.901	NR z score increase	NR [NR]	N
988	chr3	52837792	52837793	rs4481150	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Bipolar disorder (MTAG)	at least 20,352 European ancestry cases, at least 31,358 European ancestry controls	NA	3p21.1	NR	rs4481150-T	0.499	5E-14		0.0816702	[0.06-0.103] unit increase	NR [NR]	N
988	chr3	52837792	52837793	rs4481150	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Autism spectrum disorder (MTAG)	at least 18,381 European ancestry cases, at least 27,969 European ancestry controls	NA	3p21.1	NR	rs4481150-T	0.499	9E-9		0.06941006	[0.046-0.093] unit increase	NR [NR]	N
988	chr3	52837792	52837793	rs4481150	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p21.1	NR	rs4481150-C	0.478493	1E-20				Affymetrix, Illumina [24332387] (imputed)	N
988	chr3	52837792	52837793	rs4481150	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3p21.1	NR	rs4481150-?		2E-12				NR [8377093]	N
988	chr3	52837792	52837793	rs4481150	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3p21.1		rs4481150-?	NR	2E-11		0.0137404	[0.0097-0.0177] unit increase	NR [6912294] (imputed)	N
988	chr3	52837792	52837793	rs4481150	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3p21.1	ITIH3, ITIH4	rs4481150-?		5E-17				NR [6786993] (imputed)	N
988	chr3	52837854	52837855	rs2710331	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p21.1	ITIH3	rs2710331-C		3E-9		1.022	[NR]	Affymetrix [up to 79000000] (imputed)	N
988	chr3	52838401	52838402	rs4687552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p21.1	ITIH4	rs4687552-T	0.6593	2E-9		0.016208822	[0.011-0.022] unit decrease	Affymetrix [~ 11515000] (imputed)	N
988	chr3	52838401	52838402	rs4687552	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs4687552-C	NR	5E-11		0.01658	[0.012-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
988	chr3	52838401	52838402	rs4687552	23974872	Ripke S	2013-08-25	Nat Genet	Genome-wide association analysis identifies 13 new risk loci for schizophrenia.	Schizophrenia	5,001 European ancestry cases, 6,243 European ancestry controls, 8,832 cases, 12,067 controls	4,801 European ancestry cases, 4,741 European ancestry controls, 2,612 European and unknown ancestry cases, 15,021 European and unknown ancestry controls, 581 trios	3p21.1	PHF7, NT5DC2, MUSTN1, GNL3, GLYCTK, GLT8D1, DNAH1, BAP1, ALAS1, ITIH3, ITIH4, ALDOAP1, C3orf78, ITIH1, MIR135A1, MIRLET7G, NEK4, PBRM1, WDR82, TWF2, TNNC1, TMEM110, TLR9, SPCS1, NISCH, STAB1, SFMBT1, SEMA3G, RFT1, PPM1M	rs4687552-T	0.641	1E-8		1.086	[1.06-1.11]	Affymetrix, Illumina [9871789]	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0361312	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	9E-11		0.0397937	[0.028-0.052] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	1E-10		0.039306	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0367552	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0366885	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-10		0.0390033	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0371702	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0365803	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	6E-10		0.0378348	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0366552	[0.025-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	4E-10		0.0382579	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	2E-9		0.0363682	[0.024-0.048] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	6E-10		0.0378032	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	4E-8		0.0346524	[0.022-0.047] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	1E-9		0.0376111	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	6E-10		0.0382706	[0.026-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52838653	52838654	rs9968117	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs9968117-C	0.879065	7E-9		0.0341736	[0.023-0.046] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	4E-8		0.0357342	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	5E-9		0.037581	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	3E-10		0.04085	[0.028-0.054] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	8E-9		0.0373833	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	4E-9		0.0382398	[0.026-0.051] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	5E-9		0.0376265	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	2E-8		0.0365131	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	4E-9		0.0380093	[0.025-0.051] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	7E-9		0.0371239	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	2E-9		0.0391067	[0.026-0.052] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	2E-8		0.0361626	[0.024-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	1E-9		0.0391435	[0.027-0.052] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	4E-8		0.0356651	[0.023-0.048] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	3E-8		0.0362046	[0.023-0.049] unit increase	NR [11722792] (imputed)	N
988	chr3	52841219	52841220	rs13059141	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	3p21.1		rs13059141-G	0.88682	9E-10		0.0393402	[0.027-0.052] unit increase	NR [11722792] (imputed)	N
988	chr3	52842506	52842507	rs138014257	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.1		rs138014257-?	NR	6E-13				NR [~ 8900000] (imputed)	N
988	chr3	52844533	52844534	rs17331151	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	3p21.1	ITIH3	rs17331151-T	0.1084	2E-8		0.0162	[0.01-0.022] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
988	chr3	52844533	52844534	rs17331151	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3p21.1	ITIH3, ITIH4	rs17331151-A		2E-9	(AA)			Illumina [NR]	N
988	chr3	52844732	52844733	rs11717749	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.1	AC006254.1	rs11717749-T	0.1147	5E-24		0.0298	[0.024-0.036] unit increase	Affymetrix [18391927] (imputed)	N
988	chr3	52845104	52845105	rs2535627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH3	5,366 Icelandic ancestry individuals	NA	3p21.1		rs2535627-C	0.472	2E-89		0.360264	[0.33-0.4] unit increase	Illumina [7506463] (imputed)	N
988	chr3	52845104	52845105	rs2535627	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3p21.1	ITIH4	rs2535627-T	0.536866	3E-12		0.00172445	[0.0013-0.0022] unit increase	Affymetrix [13995440] (imputed)	N
988	chr3	52845104	52845105	rs2535627	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3p21.1	NR	rs2535627-?		4E-8				NR [8377093]	N
988	chr3	52845104	52845105	rs2535627	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3p21.1	NR	rs2535627-?	NR	8E-11				Illumina [up to 5582932] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and schizophrenia (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 34,129 schizophrenia cases, 45,512 controls	NA	3p21.1		rs2535627-T	0.516	3E-7		0.047	unit increase	Illumina [NR] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	9E-45	(RBL2, 13565_2_3)	0.33331078	[0.29-0.38] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	8E-22	(TXNDC12, 4815_25_3)	0.24289267	[0.19-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	7E-55	(ITIH3, 7145_1_3)	0.3655158	[0.32-0.41] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	6E-16	(NMES1, 6406_3_3)	0.19322686	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	6E-12	(LHCGR, 14634_13_3)	0.17172082	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	1E-99	(ITIH1, 7955_195_3)	0.51395583	[0.47-0.56] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	1E-195	(SIGIRR, 8326_63_3)	0.70688015	[0.66-0.75] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2535627-C	0.47203125	1E-16	(JAKMIP3, 9068_17_3)	0.2003897	[0.15-0.25] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52845104	52845105	rs2535627	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.1	NR	rs2535627-T	NR	2E-11		1.07	[NR]	Illumina [7158791] (imputed)	N
988	chr3	52845104	52845105	rs2535627	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3p21.1	GLT8D1, GNL3, ITIH1, ITIH3, ITIH4, MUSTN1, NEK4, NISCH, NT5DC2, PBRM1, SMIM4, SPCS1, STAB1, TMEM110, TMEM110-MUSTN1	rs2535627-T	0.529	4E-11		1.071	[1.049-1.092]	Affymetrix, Illumina [9005918] (imputed)	N
988	chr3	52847600	52847601	rs2071044	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p21.1	ITIH4, ENSG00000243696	rs2071044-C	NR	4E-8		0.0083641	[0.0054-0.0114] unit decrease	Affymetrix [18485882] (imputed)	N
988	chr3	52848206	52848207	rs77347777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p21.1	ITIH4, RP5-966M1.6	rs77347777-T	NR	2E-9		0.0294574	[0.02-0.039] unit increase	Affymetrix [321114] (imputed)	N
988	chr3	52849548	52849549	rs7617468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	ITIH4, RP5-966M1.6	rs7617468-C	NR	6E-12		0.0199865	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52849548	52849549	rs7617468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	ITIH4, RP5-966M1.6	rs7617468-C	NR	2E-12		0.0204649	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52851136	52851137	rs2240917	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	3p21.1	NR	rs2240917-T	0.613	5E-8		1.08872		NR [9372253] (imputed)	N
988	chr3	52852409	52852410	rs41292864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs41292864-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
988	chr3	52852409	52852410	rs41292864	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p21.1	ITIH4, RP5-966M1.6	rs41292864-A	0.1248	2E-6		0.0486	[0.029-0.069] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
988	chr3	52852896	52852897	rs35004449	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3p21.1	ITIH4, RP5-966M1.6	rs35004449-T	0.2539	2E-19	(NEP)	0.5304	[0.41-0.65] unit increase	Illumina [8683751] (imputed)	N
988	chr3	52852896	52852897	rs35004449	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p21.1	ITIH4	rs35004449-T	0.2724	2E-15		0.0027	[0.0019-0.0035] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
988	chr3	52852896	52852897	rs35004449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p21.1		rs35004449-?	NR	2E-13				NR [~ 8900000] (imputed)	N
988	chr3	52853746	52853747	rs2276815	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MRPL58	5,353 Icelandic ancestry individuals	NA	3p21.1		rs2276815-G	0.2748	1E-46		0.28968	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
988	chr3	52853746	52853747	rs2276815	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETHE1	5,354 Icelandic ancestry individuals	NA	3p21.1		rs2276815-G	0.2748	3E-15		0.161003	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
988	chr3	52853746	52853747	rs2276815	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ATP13A1	5,352 Icelandic ancestry individuals	NA	3p21.1		rs2276815-G	0.2748	2E-12		0.140085	[0.1-0.18] unit decrease	Illumina [7506463] (imputed)	N
988	chr3	52853746	52853747	rs2276815	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p21.1	NR	rs2276815-C	0.302187	2E-9		0.046517678	[0.031-0.062] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	6E-131	(SIGIRR, 8326_63_3)	0.6477686	[0.6-0.7] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	5E-17	(JAKMIP3, 9068_17_3)	0.22292821	[0.17-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	4E-109	(ITIH1, 7955_195_3)	0.5893577	[0.54-0.64] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	3E-33	(ICT1, 6380_23_3)	0.3241387	[0.27-0.38] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	3E-12	(ETHE1, 3847_56_2)	0.18960093	[0.14-0.24] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	3E-10	(NMES1, 6406_3_3)	0.16564696	[0.11-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	2E-11	(SEMA3G, 5628_21_3)	0.18069081	[0.13-0.23] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	1E-25	(RBL2, 13565_2_3)	0.27433893	[0.22-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	NR	rs2239547-T	0.72015625	1E-24	(ITIH3, 7145_1_3)	0.26649597	[0.22-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	ITIH4	rs2239547-T	0.72015625	2E-7	(ITIH4, 4811_33_3)	0.14120965	[0.089-0.194] unit increase	Illumina [> 1000000] (imputed)	N
988	chr3	52855228	52855229	rs2239547	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p21.1	ITIH3, ITIH4	rs2239547-?	NR	6E-8		1.1	[1.06-1.14]	Affymetrix, Illumina [1252901] (imputed)	N
988	chr3	52855864	52855865	rs2256332	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.1		rs2256332-?	NR	5E-17				NR [~ 8900000] (imputed)	N
988	chr3	52859629	52859630	rs2535633	24861553	Wen W	2014-05-26	Hum Mol Genet	Meta-analysis of genome-wide association studies in East Asian-ancestry populations identifies four new loci for body mass index.	Body mass index	82,438 East Asian ancestry individuals, 4,301 South East Asian ancestry individuals	Up to 47,352 East Asian ancestry individuals	3p21.1	ITIH4	rs2535633-G	0.42	2E-10		0.0288	[0.02-0.038] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
988	chr3	52860875	52860876	rs143427404	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p21.1	MUSTN1	rs143427404-A	0.0111	4E-8		0.056930363	[0.037-0.077] unit increase	Affymetrix [11514654] (imputed)	N
988	chr3	52861210	52861211	rs13072536	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p21.1	NR	rs13072536-T	0.233919746219077	6E-12		0.012002205	[0.0086-0.0154] unit decrease	NR [NR]	N
988	chr3	52861210	52861211	rs13072536	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p21.1	NR	rs13072536-T	0.233919746219077	6E-12		0.0076678004	[0.0055-0.0099] unit decrease	NR [NR]	N
988	chr3	52861210	52861211	rs13072536	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p21.1	ITIH4	rs13072536-A	0.77644	2E-15		0.0185976	[0.014-0.023] unit decrease	NR [13737936] (imputed)	N
988	chr3	52865124	52865125	rs77223362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	ITIH4, RP5-966M1.6	rs77223362-A	NR	1E-9		0.0240299	[0.016-0.032] unit decrease	Affymetrix [321114] (imputed)	N
988	chr3	52869262	52869263	rs2276823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p21.1		rs2276823-?	NR	8E-20				NR [~ 8900000] (imputed)	N
988	chr3	52870323	52870324	rs4687662	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	153,015 East Asian ancestry individuals	NA	3p21.1		rs4687662-C	0.489237	3E-9		0.0186298	[0.013-0.025] unit increase	Illumina [13478961] (imputed)	N
988	chr3	52870323	52870324	rs4687662	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	142,940 East Asian ancestry individuals	NA	3p21.1	NR	rs4687662-T	0.514544	7E-10		0.023182	[0.016-0.031] SD units decrease	Affymetrix, Illumina [16289021] (imputed)	N
988	chr3	52870323	52870324	rs4687662	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p21.1		rs4687662-?	NR	1E-7				NR [~ 8900000] (imputed)	N
988	chr3	52870323	52870324	rs4687662	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	TMEM110	rs4687662-T	NR	4E-10		6.261	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
988	chr3	52873983	52873984	rs11626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p21.1		rs11626-?	NR	2E-8				NR [~ 8900000] (imputed)	N
988	chr3	52874287	52874288	rs6445538	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.1		rs6445538-T	0.776	1E-11		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
988	chr3	52874287	52874288	rs6445538	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p21.1	TMEM110	rs6445538-C	0.233	8E-11		0.0165	[0.012-0.021] unit increase	Illumina [~ 250000] (imputed)	N
988	chr3	52874860	52874861	rs7638524	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs7638524-A	NR	2E-8		5.625	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
988	chr3	52875771	52875772	rs62253561	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs62253561-A	NR	4E-13		0.0353	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
988	chr3	52880127	52880128	rs6445541	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs6445541-T	NR	7E-10		0.01511	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
988	chr3	52880739	52880740	rs2001732	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs2001732-T	NR	1E-13		0.0300041	[0.022-0.038] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52880739	52880740	rs2001732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3p21.1	NR	rs2001732-T	0.140523	7E-10		0.017864	[0.012-0.024] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
988	chr3	52886604	52886605	rs2276825	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p21.1	NR	rs2276825-C	0.251021200023886	1E-12		0.0075253374	[0.0054-0.0096] unit decrease	NR [NR]	N
988	chr3	52886604	52886605	rs2276825	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p21.1	NR	rs2276825-C	0.245	5E-12		0.00864869	[0.0062-0.0111] unit increase	NR [9732723] (imputed)	N
988	chr3	52886604	52886605	rs2276825	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p21.1	NR	rs2276825-C	0.245	2E-10		0.018875571	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
988	chr3	52890474	52890475	rs4687556	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs4687556-T	NR	2E-15		0.0316845	[0.024-0.04] unit decrease	Affymetrix [321169] (imputed)	N
988	chr3	52891569	52891570	rs7630552	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs7630552-G	NR	5E-15		0.022887	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
988	chr3	52891706	52891707	rs7620690	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs7620690-A	NR	1E-14		0.0226491	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
988	chr3	52893186	52893187	rs4687677	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	3p21.1	NR	rs4687677-T	0.09086	6E-8		1.401	[0.85-1.96] unit decrease	Illumina [at least 567677] (imputed)	N
988	chr3	52893464	52893465	rs6798941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p21.1		rs6798941-T	NR	1E-16		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
988	chr3	52893464	52893465	rs6798941	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p21.1	MUSTN1, TMEM110	rs6798941-C	NR	3E-10		0.0086139	[0.0059-0.0113] unit increase	Affymetrix [10061374] (imputed)	N
988	chr3	52893464	52893465	rs6798941	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p21.1	TMEM110	rs6798941-C	0.704403	3E-13		0.0109993	[0.008-0.0139] unit decrease	Affymetrix [12370749]	N
988	chr3	52893464	52893465	rs6798941	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.1	RFT1	rs6798941-T	0.291124	3E-14		7.605	unit decrease	NR [10847151] (imputed)	N
988	chr3	52894142	52894142	rs34428389	28060188	Hamet P	2017-01-16	J Hypertens	PROX1 gene CC genotype as a major determinant of early onset of type 2 diabetes in slavic study participants from Action in Diabetes and Vascular Disease: Preterax and Diamicron MR Controlled Evaluation study.	Type 2 diabetes (age of onset)	2,307 Celtic ancestry individuals, 1,102 Slavic ancestry individuals	NA	3p21.1	TMEM110, MIR8064, SFMBT1	rs34428389-?	NR	8E-6				Affymetrix [5045527] (imputed)	N
988	chr3	52896408	52896409	rs11708390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	TMEM110-MUSTN1, TMEM110	rs11708390-A	NR	1E-13		0.0299355	[0.022-0.038] unit decrease	Affymetrix [319769] (imputed)	N
988	chr3	52896854	52896855	rs11130329	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	3p21.1		rs11130329-C	NR	3E-9		7.65	[3.91-14.99]	Affymetrix [NR] (imputed)	N
988	chr3	52903445	52903446	rs10865977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p21.1		rs10865977-T	NR	3E-10		0.0149	[0.01-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
988	chr3	52905212	52905213	rs2336664	32047095	Traglia M	2020-02-11	Genetics	Genetic Contributions to Maternal and Neonatal Vitamin D Levels.	Midgestational total 25-hydroxyvitamin D levels (fetal genetic effect)	269 European ancestry individuals, 323 Hispanic individuals, 115 East Asian ancestry individuals, 23 African American individuals, 23 South Asian ancestry individuals, 23 individuals	NA	3p21.1	STIMATE, TMEM110	rs2336664-?	NR	2E-6		0.42	[0.24-0.6] unit increase	Affymetrix [622716]	N
988	chr3	52913278	52913279	rs3796352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p21.1	NR	rs3796352-T	NR	5E-15		0.0314	[0.024-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
988	chr3	52913278	52913279	rs3796352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3p21.1	NR	rs3796352-T	NR	2E-11		0.0283	[0.02-0.037] unit increase	Affymetrix [9000000] (imputed)	N
988	chr3	52913278	52913279	rs3796352	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3p21.1	NR	rs3796352-T	NR	3E-9		0.025	[0.017-0.033] unit increase	Affymetrix [9000000] (imputed)	N
988	chr3	52913278	52913279	rs3796352	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3p21.1	TMEM110	rs3796352-A		5E-7	(AA)			Illumina [NR]	N
988	chr3	52913402	52913403	rs1986656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3p21.1	TMEM110, TMEM110-MUSTN1	rs1986656-T	0.128961	2E-9		0.0203555	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
988	chr3	52925402	52925403	rs9836178	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p21.1	NR	rs9836178-T	NR	2E-11		0.01928	[0.014-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
988	chr3	52934597	52934598	rs74576993	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3p21.1	TMEM110	rs74576993-G	NR	4E-8		0.0407902	[0.026-0.055] unit increase	Affymetrix [127266] (imputed)	N
988	chr3	52941098	52941099	rs186459505	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	3p21.1	SFMBT1	rs186459505-?	1.99561E-4	2E-16				Illumina [~ 244000]	N
988	chr3	52941098	52941099	rs186459505	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	3p21.1	SFMBT1	rs186459505-?	1.99561E-4	2E-16				Illumina [~ 244000]	N
988	chr3	52941098	52941099	rs186459505	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	3p21.1	SFMBT1	rs186459505-?	1.93237E-4	2E-16				Illumina [~ 244000]	N
988	chr3	52941098	52941099	rs186459505	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	3p21.1	SFMBT1	rs186459505-?	1.93237E-4	2E-16				Illumina [~ 244000]	N
988	chr3	52941098	52941099	rs186459505	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	3p21.1	SFMBT1	rs186459505-?	1.93237E-4	2E-16				Illumina [~ 244000]	N
988	chr3	52949253	52949254	rs11708337	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs11708337-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
989	chr3	52962680	52962681	rs13082026	31263887	Adams MJ	2019-07-01	Int J Epidemiol	Factors associated with sharing e-mail information and mental health survey participation in large population cohorts.	Mental health study participation (completed survey)	122,647 British ancestry cases, 248,781 British ancestry controls	NA	3p21.1	SFMBT1	rs13082026-T	0.44	2E-8		0.0062883	[0.0041-0.0085] unit decrease	NR [16367095] (imputed)	N
989	chr3	52986011	52986012	rs36051354	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs36051354-T	0.6785	1E-9	(conditional-joint)	0.0093	[0.0064-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
989	chr3	52986011	52986012	rs36051354	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.1	Intergenic	rs36051354-T	0.6809	1E-10	(MTAG)	0.0157	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
989	chr3	52986011	52986012	rs36051354	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	SFMBT1	rs36051354-T	NR	4E-12		6.927	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
989	chr3	52986011	52986012	rs36051354	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p21.1	SFMBT1	rs36051354-T	NR	1E-8		0.018684454	[0.012-0.025] unit increase	Affymetrix [NR]	N
989	chr3	52989382	52989383	rs62253608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.1		rs62253608-?	NR	1E-9				NR [~ 8900000] (imputed)	N
989	chr3	52998503	52998504	rs2336670	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	SFMBT1	rs2336670-T	NR	2E-12		7.017	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	9E-9	(216 ms)	0.0520645	[0.034-0.07] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	4E-8	(210 ms)	0.0502334	[0.032-0.069] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	3E-9	(224 ms)	0.05429	[0.036-0.073] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	3E-9	(220 ms)	0.0538809	[0.036-0.072] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	1E-9	(218 ms)	0.0550241	[0.037-0.073] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	52999223	52999223	rs113855341	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	SFMBT1	rs113855341-T	0.902688	1E-8	(222 ms)	0.0526359	[0.034-0.071] unit increase	Affymetrix [10000000] (imputed)	N
989	chr3	53008768	53008769	rs35384050	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p21.1	SFMBT1, RP11-894J14.5	rs35384050-T	0.1016	4E-6		0.0489	[0.028-0.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
989	chr3	53013266	53013267	rs62253653	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p21.1	SFMBT1	rs62253653-A	0.7036	1E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
989	chr3	53014656	53014657	rs2581816	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p21.1	SFMBT1, RP11-894J14.5	rs2581816-T	0.3412	1E-6		0.0413	[0.025-0.058] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
989	chr3	53019963	53019964	rs34561018	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	SFMBT1, RP11-894J14.5	rs34561018-T	NR	2E-11		0.032356	[0.023-0.042] unit decrease	Affymetrix [319769] (imputed)	N
989	chr3	53019963	53019964	rs34561018	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	SFMBT1, RP11-894J14.5	rs34561018-T	NR	5E-11		0.0315898	[0.022-0.041] unit decrease	Affymetrix [319769] (imputed)	N
989	chr3	53020543	53020544	rs2581820	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p21.1	SFMBT1	rs2581820-A	0.2864	7E-11		0.0021	[0.0015-0.0027] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
989	chr3	53022407	53022408	rs2581824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p21.1		rs2581824-A	NR	5E-64		0.03	[0.026-0.034] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
989	chr3	53022407	53022408	rs2581824	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	3p21.1		rs2581824-A	0.504919	2E-10		0.0224362	[0.016-0.029] unit increase	Illumina [13475706] (imputed)	N
989	chr3	53028374	53028375	rs2336721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs2336721-T	0.3778	1E-10		0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
989	chr3	53028374	53028375	rs2336721	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.1	Intergenic	rs2336721-T	0.3778	5E-10	(MTAG)	0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
989	chr3	53036205	53036206	rs2581794	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.1	NR	rs2581794-A	NR	3E-7		1.06	[NR]	Illumina [7158791] (imputed)	N
989	chr3	53040458	53040459	rs11715894	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	3p21.1	SFMBT1	rs11715894-A	NR	1E-6		0.138	unit increase	Affymetrix [7969123] (imputed)	N
989	chr3	53055310	53055311	rs2581778	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	3p21.1	SFMBT1	rs2581778-A	0.42	4E-14		1.16	[1.12-1.20]	Affymetrix [710030]	N
989	chr3	53055521	53055522	rs2244552	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3p21.1	SFMBT1	rs2244552-A	0.5468	1E-43		0.0427	[0.037-0.049] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
989	chr3	53055521	53055522	rs2244552	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3p21.1	SFMBT1	rs2244552-A	0.4891	5E-7	(East Asian)	0.029	[0.018-0.04] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
989	chr3	53055521	53055522	rs2244552	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3p21.1	NR	rs2244552-A	0.4649	8E-20	(men)	0.0449	[0.035-0.055] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
989	chr3	53055521	53055522	rs2244552	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3p21.1	NR	rs2244552-A	0.4527	4E-15	(women)	0.0352	[0.026-0.044] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
989	chr3	53055841	53055842	rs2244461	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs2244461-A	NR	3E-8		5.569	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
989	chr3	53059494	53059495	rs77058023	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs77058023-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
989	chr3	53060448	53060449	rs2564951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	SFMBT1, RP11-894J14.5	rs2564951-T	NR	7E-9		0.0178769	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
989	chr3	53060448	53060449	rs2564951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	SFMBT1, RP11-894J14.5	rs2564951-T	NR	2E-8		0.0173515	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
989	chr3	53060448	53060449	rs2564951	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	SFMBT1, RP11-894J14.5	rs2564951-T	NR	4E-9		0.0184336	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
989	chr3	53062660	53062661	rs9847710	34719683	Park JS	2021-11-01	J Hum Genet	Genome-wide meta-analysis revealed several genetic loci associated with serum uric acid levels in Korean population: an analysis of Korea Biobank data.	Serum uric acid levels	60,585 Korean ancestry individuals	NA	3p21.1		rs9847710-T	0.43	2E-11				NR [7104359] (imputed)	N
989	chr3	53062660	53062661	rs9847710	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3p21.1	SFMBT1	rs9847710-T	0.41490000000000005	1E-23		1.04	[1.03-1.05]	Affymetrix, Illumina [8494288] (imputed)	N
989	chr3	53062660	53062661	rs9847710	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p21.1	NR	rs9847710-T	0.58	3E-72		0.0333	[0.03-0.037] unit decrease	NR [NR]	N
989	chr3	53062660	53062661	rs9847710	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	3p21.1	NR	rs9847710-G	0.4118	3E-7	(EA)	1.067568	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
989	chr3	53062660	53062661	rs9847710	23128233	Jostins L	2012-11-01	Nature	Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.	Ulcerative colitis	Up to 12,924 European ancestry cases, up to 21,442 European ancestry controls	Up to 25,683 European ancestry cases, up to 17,015 European ancestry controls	3p21.1	PRKCD, ITIH4	rs9847710-C	0.416	1E-8		1.064	[1.027-1.102]	Affymetrix, Illumina [1230000] (imputed)	N
989	chr3	53063830	53063831	rs74683485	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH3	5,366 Icelandic ancestry individuals	NA	3p21.1		rs74683485-A	0.01742	4E-41		0.939884	[0.8-1.08] unit decrease	Illumina [7506463] (imputed)	N
989	chr3	53064021	53064022	rs12489490	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p21.1	NR	rs12489490-A	0.228353	8E-14		7.467	unit decrease	NR [10847151] (imputed)	N
989	chr3	53068041	53068042	rs11709427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3p21.1		rs11709427-T	0.539521	5E-8		0.0170685	[0.011-0.023] unit increase	Illumina [13479135] (imputed)	N
989	chr3	53071796	53071797	rs2581817	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3p21.1	SFMBT1	rs2581817-C	0.4198	5E-35		0.047911	[0.04-0.056] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
989	chr3	53071796	53071797	rs2581817	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Gout	13,179 European, African American and unknown ancestry cases, 750,634 European, African American and unknown ancestry controls	NA	3p21.1	SFMBT1	rs2581817-?	NR	2E-9	(EA)			Affymetrix, Illumina [8249849] (imputed)	N
989	chr3	53073313	53073314	rs71301804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p21.1		rs71301804-A	NR	3E-8		0.016	[0.01-0.022] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
989	chr3	53082637	53082638	rs2581825	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3p21.1	SFMBT1	rs2581825-?	NR	2E-8		0.04	[0.026-0.054] unit decrease	Illumina [34656550] (imputed)	N
990	chr3	53085474	53085475	rs71301807	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p21.1	NR	rs71301807-G	0.242045944770752	6E-10		0.008983689	[0.0061-0.0118] unit decrease	NR [NR]	N
990	chr3	53085474	53085475	rs71301807	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p21.1	NR	rs71301807-G	0.242045944770752	1E-10		0.009457928	[0.0066-0.0124] unit decrease	NR [NR]	N
990	chr3	53086613	53086614	rs187548445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	RP11-894J14.5	rs187548445-G	NR	8E-11		0.0790959	[0.055-0.103] unit decrease	Affymetrix [319769] (imputed)	N
990	chr3	53086613	53086614	rs187548445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	RP11-894J14.5	rs187548445-G	NR	2E-10		0.0773563	[0.054-0.101] unit decrease	Affymetrix [319769] (imputed)	N
990	chr3	53086613	53086614	rs187548445	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	RP11-894J14.5	rs187548445-G	NR	1E-8		0.0699928	[0.046-0.094] unit decrease	Affymetrix [321169] (imputed)	N
990	chr3	53086613	53086614	rs187548445	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs187548445-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
990	chr3	53088284	53088285	rs9831861	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	3p21.1	NR	rs9831861-G	0.59	4E-10		1.07	[1.05-1.09]	Affymetrix, Illumina [> 10000000] (imputed)	N
990	chr3	53091077	53091078	rs7647313	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p21.1	NR	rs7647313-G	0.336978	1E-8		0.038069002	[0.025-0.051] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
990	chr3	53096046	53096047	rs11915851	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs11915851-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
990	chr3	53099465	53099466	rs6445559	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	3p21.1	SFMBT1, RFT1	rs6445559-A	0.561	3E-12	(Japanese)	0.029	[0.021-0.037] unit increase	Illumina [5864938] (imputed)	N
990	chr3	53099465	53099466	rs6445559	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	3p21.1	SFMBT1, RFT1	rs6445559-?	NR	4E-9		0.02594	[0.017-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
990	chr3	53099660	53099661	rs7637082	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	3p21.1	RP11, 894J14.5	rs7637082-C	0.2535	2E-18		0.023396907	[0.017-0.029] unit increase	NR [9417325] (imputed)	N
990	chr3	53100213	53100214	rs6770152	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	3p21.1	SFMBT1	rs6770152-G		2E-17		0.045	[0.035-0.055] mg/dl increase	NR [NR] (imputed)	N
990	chr3	53100213	53100214	rs6770152	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	3p21.1	SFMBT1, RFT1	rs6770152-T	0.542	5E-18	(EA)	0.034285713	[0.026-0.042] unit decrease	Illumina [1986983] (imputed)	N
990	chr3	53100213	53100214	rs6770152	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	3p21.1	SFMBT1, RFT1	rs6770152-T	0.4599	9E-12	(Japanese)	0.0273	[0.019-0.035] unit decrease	Illumina [1986983] (imputed)	N
990	chr3	53100213	53100214	rs6770152	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	3p21.1	MUSTN1, SFMBT1	rs6770152-T	0.58	3E-16		0.044	[0.034-0.054] mg/dl decrease	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
990	chr3	53103261	53103262	rs2564923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3p21.1	NR	rs2564923-A	0.442795	8E-11		0.00639104	[0.0041-0.0087] unit increase	Affymetrix [16582621] (imputed)	N
990	chr3	53103261	53103262	rs2564923	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3p21.1	NR	rs2564923-A	0.442795	8E-12		0.00790291	[0.0055-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
990	chr3	53103261	53103262	rs2564923	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p21.1	SFMBT1, RFT1	rs2564923-?	NR	1E-16		0.028924596	[0.022-0.036] unit decrease	Illumina [27896057] (imputed)	N
990	chr3	53104638	53104639	rs13084937	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	RP11-894J14.5	rs13084937-A	NR	4E-13		0.034101	[0.025-0.043] unit decrease	Affymetrix [321169] (imputed)	N
990	chr3	53118738	53118739	rs2336725	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p21.1	RTF1	rs2336725-T	0.55	1E-12		0.027	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
990	chr3	53119533	53119534	rs2253675	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p21.1	SFMBT1	rs2253675-C	NR	6E-6		1.046	NR	Affymetrix, Illumina [8278136] (imputed)	N
990	chr3	53125428	53125429	rs62255926	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p21.1	NR	rs62255926-T	0.2629	4E-8		0.0252	[0.016-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
990	chr3	53125468	53125469	rs2564922	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Diastolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	3p21.1	RFT1	rs2564922-?	NR	3E-7		5.118	NR unit increase	Illumina [up to 1520000] (imputed)	N
990	chr3	53125584	53125585	rs2564921	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3p21.1	RFT1	rs2564921-T	0.43	2E-12		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
990	chr3	53125921	53125922	rs11242	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	RFT1	rs11242-T	0.4339	6E-14	(EA)	0.0269	[0.02-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
990	chr3	53125921	53125922	rs11242	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	RFT1	rs11242-T	0.4339	4E-6	(EA, women)	0.0211	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
990	chr3	53125921	53125922	rs11242	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p21.1	RFT1	rs11242-T	0.4339	1E-11	(EA,men)	0.035	[0.025-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
990	chr3	53127676	53127677	rs2581787	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p21.1	NR	rs2581787-G	0.4421	3E-8		0.0254	[0.016-0.034] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
990	chr3	53127676	53127677	rs2581787	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p21.1	RFT1	rs2581787-T	0.5634	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
990	chr3	53131276	53131277	rs62255930	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NR	rs62255930-?	NR	6E-8		5.407	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
990	chr3	53131771	53131772	rs2163167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p21.1		rs2163167-?	NR	4E-10				NR [~ 8900000] (imputed)	N
990	chr3	53133148	53133149	rs2581828	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p21.1	RP11-894J14.5, RFT1	rs2581828-C	NR	5E-15		0.0223544	[0.017-0.028] unit increase	Affymetrix [321016] (imputed)	N
990	chr3	53133148	53133149	rs2581828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.1		rs2581828-?	NR	1E-78				NR [~ 8900000] (imputed)	N
990	chr3	53133148	53133149	rs2581828	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3p21.1	intergenic	rs2581828-C	0.597	6E-9		1.1	[1.07-1.13]	Illumina [9560910] (imputed)	N
990	chr3	53133148	53133149	rs2581828	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3p21.1	RFT1, RP11-894J14.5	rs2581828-?		7E-9				Illumina [9560910] (imputed)	N
990	chr3	53138253	53138254	rs1560333	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	RFT1	rs1560333-T	NR	2E-13		0.0336855	[0.025-0.043] unit decrease	Affymetrix [319769] (imputed)	N
990	chr3	53139505	53139506	rs2564942	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	3p21.1	RFT1	rs2564942-C	0.40582901	1E-8		0.00530751	[0.0035-0.0071] unit increase	Affymetrix [9463307] (imputed)	N
990	chr3	53139506	53139507	rs2581774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p21.1		rs2581774-G	NR	6E-61		0.023	[0.02-0.026] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
990	chr3	53140602	53140603	rs1004807	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs1004807-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
990	chr3	53142979	53142980	rs2115780	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p21.1	ITIH4, ITIH4-AS1, MIR8064, MUSTN1, RFT1, SFMBT1, TMEM110, TMEM110-MUSTN1	rs2115780-A		4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
990	chr3	53144362	53144363	rs9838517	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs9838517-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
990	chr3	53147575	53147576	rs13088281	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3p21.1	RFT1	rs13088281-A		3E-11	(AA)			Illumina [NR]	N
990	chr3	53160242	53160243	rs6769944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs6769944-A	NR	2E-19		0.0231	[0.018-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
990	chr3	53160359	53160360	rs11713763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	RFT1	rs11713763-A	NR	5E-8		0.0160118	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
990	chr3	53160359	53160360	rs11713763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	RFT1	rs11713763-A	NR	2E-8		0.0165865	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
990	chr3	53160359	53160360	rs11713763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	RFT1	rs11713763-A	NR	6E-10		0.0183373	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
990	chr3	53160359	53160360	rs11713763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	RFT1	rs11713763-A	NR	3E-10		0.0187606	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
990	chr3	53175016	53175017	rs1080500	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	3p21.1		rs1080500-?	NR	2E-8		0.0193	NR unit decrease	NR [4428082] (imputed)	N
990	chr3	53175016	53175017	rs1080500	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p21.1	GLT8D1, GNL3, ITIH1, ITIH3, ITIH4, ITIH4-AS1, MIR8064, MUSTN1, NEK4, NT5DC2, PBRM1, RFT1, SFMBT1, SMIM4, SNORD136, SNORD19, SNORD19B, SNORD69, SPCS1, STAB1, TMEM110, TMEM110-MUSTN1	rs1080500-?		6E-9		1.0638298	[1.04-1.09]	Affymetrix, Illumina [NR]	N
990	chr3	53194320	53194321	rs151079563	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	3p21.1	PRKCD	rs151079563-T	NR	4E-7		0.145	unit increase	Affymetrix [7969123] (imputed)	N
990	chr3	53199079	53199080	rs1483186	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p21.1	NR	rs1483186-?	NR	1E-34				Affymetrix [NR]	N
990	chr3	53204863	53204864	rs78153065	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	3p21.1	PRKCD	rs78153065-A	0.018	8E-7		0.133	[0.08-0.186] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
991	chr3	53215798	53215799	rs7630325	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs7630325-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
991	chr3	53218638	53218639	rs112611929	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	PRKCD	rs112611929-T	NR	4E-8		0.0333179	[0.021-0.045] unit increase	Affymetrix [321114] (imputed)	N
991	chr3	53220374	53220375	rs41275531	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3p21.1		rs41275531-?	NR	5E-8		0.0106133	[0.0068-0.0144] unit decrease	NR [NR]	N
991	chr3	53225192	53225193	rs7634447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	PRKCD	rs7634447-A	NR	2E-8		0.0183662	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53225192	53225193	rs7634447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	PRKCD	rs7634447-A	NR	2E-8		0.0184307	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53225192	53225193	rs7634447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	PRKCD	rs7634447-A	NR	6E-10		0.020433	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
991	chr3	53225192	53225193	rs7634447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	PRKCD	rs7634447-A	NR	5E-10		0.0205454	[0.014-0.027] unit increase	Affymetrix [321169] (imputed)	N
991	chr3	53227790	53227791	rs114058530	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3p21.1	NR	rs114058530-T	NR	2E-10		0.0346	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
991	chr3	53239937	53239938	rs4515042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs4515042-C	NR	1E-13		0.0213342	[0.016-0.027] unit increase	Affymetrix [321169] (imputed)	N
991	chr3	53245901	53245902	rs7620260	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs7620260-G	NR	3E-14		0.0216961	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53245901	53245902	rs7620260	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs7620260-?	NR	2E-19				Affymetrix [~ 8270000] (imputed)	N
991	chr3	53248422	53248422	rs534046245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs534046245-AAAG	NR	4E-8		0.0191347	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53248422	53248422	rs534046245	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs534046245-AAAG	NR	2E-8		0.0194758	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53249358	53249359	rs12374008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs12374008-C	NR	2E-14		0.0216729	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53249358	53249359	rs12374008	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	AC097015.1	rs12374008-C	NR	2E-13		0.02097	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
991	chr3	53251806	53251807	rs7641212	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs7641212-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
991	chr3	53252756	53252757	rs73840240	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs73840240-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
991	chr3	53253052	53253053	rs11130360	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	6,431 European ancestry cases, 145,949 European ancestry controls, 5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	3p21.1		rs11130360-T	NR	5E-9		0.1131	[0.075-0.151] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
991	chr3	53259995	53259996	rs3816767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.1		rs3816767-?	NR	3E-8				NR [~ 8900000] (imputed)	N
991	chr3	53265765	53265766	rs11130362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	TKT	rs11130362-T	NR	1E-8		0.0183425	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53265765	53265766	rs11130362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	TKT	rs11130362-T	NR	5E-9		0.0186845	[0.012-0.025] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53265765	53265766	rs11130362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	TKT	rs11130362-T	NR	7E-9		0.0186881	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
991	chr3	53265765	53265766	rs11130362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	TKT	rs11130362-T	NR	1E-8		0.0183652	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
991	chr3	53278240	53278241	rs12493802	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p21.1	TKT	rs12493802-C	NR	3E-10		0.0181181	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53280097	53280098	rs7617474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antihypertensives)	5,688 East Asian ancestry cases, 173,038 East Asian ancestry controls	NA	3p21.1		rs7617474-G	0.509073161	4E-10		0.11928595	[0.082-0.157] unit increase	Illumina [13134967] (imputed)	N
991	chr3	53281182	53281183	rs7630632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p21.1	TKT	rs7630632-G	NR	4E-10		0.0179257	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
991	chr3	53281182	53281183	rs7630632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	TKT	rs7630632-G	NR	2E-11		0.0193838	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
991	chr3	53281182	53281183	rs7630632	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	TKT	rs7630632-G	NR	9E-12		0.0197053	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
991	chr3	53281264	53281265	rs7625237	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	3p21.1		rs7625237-T	0.499	1E-6		1.15	[1.09-1.22]	Illumina [7199488] (imputed)	N
991	chr3	53282187	53282188	rs4687717	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3p21.1	TKT	rs4687717-T	0.487137	5E-13	(erythronate*)	0.159	[0.12-0.2] unit increase	Illumina [13039987] (imputed)	N
991	chr3	53282187	53282188	rs4687717	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	3p21.1	TKT	rs4687717-T	0.42	9E-23	(phosphate/erythronate)	0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
991	chr3	53282187	53282188	rs4687717	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3p21.1	TKT	rs4687717-T	0.42	1E-13	(erythronate)	0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
991	chr3	53282302	53282303	rs4687718	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3p21.1	TKT	rs4687718-A	0.169002	1E-16	(erythronate*)	0.252	[0.19-0.31] unit decrease	Illumina [13039987] (imputed)	N
991	chr3	53282302	53282303	rs4687718	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	3p21.1	TKT	rs4687718-A	0.140904	4E-23		0.474344	[0.38-0.57] ms decrease	Illumina [162199]	N
991	chr3	53282302	53282303	rs4687718	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	3p21.1	TKT	rs4687718-A	0.126618739997286	2E-8		0.38900328	[0.25-0.52] ms decrease	Illumina [213295]	N
991	chr3	53282302	53282303	rs4687718	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p21.1	TKT	rs4687718-?	NR	7E-10	(EA)	0.57	[0.39-0.75] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
991	chr3	53282302	53282303	rs4687718	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p21.1	NR	rs4687718-?	NR	7E-10	(EA)			Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
991	chr3	53282302	53282303	rs4687718	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p21.1	TKT	rs4687718-A	0.14	6E-9	(European)	0.63	[NR] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
991	chr3	53282302	53282303	rs4687718	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p21.1	TKT	rs4687718-A		3E-6		0.38	[0.22-0.54] millisecond decrease	Affymetrix, Illumina [2955816] (imputed)	N
991	chr3	53282989	53282990	rs62256002	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	TKT	rs62256002-T	0.878588	7E-22	(-28 ms)	0.0795393	[0.063-0.096] unit decrease	Affymetrix [10000000] (imputed)	N
991	chr3	53282989	53282990	rs62256002	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	TKT	rs62256002-T	0.878588	7E-14	(-32 ms)	0.0627054	[0.046-0.079] unit decrease	Affymetrix [10000000] (imputed)	N
991	chr3	53282989	53282990	rs62256002	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p21.1	TKT	rs62256002-T	0.878588	1E-18	(-30 ms)	0.0731659	[0.056-0.09] unit decrease	Affymetrix [10000000] (imputed)	N
991	chr3	53283951	53283952	rs62256003	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p21.1	NR	rs62256003-T	0.211034	4E-11		0.015317	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
991	chr3	53288150	53288151	rs115942480	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p21.1	NR	rs115942480-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
991	chr3	53288474	53288475	rs13059189	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	3p21.1	NR	rs13059189-A	NR	1E-6	(AA)	0.146423	[0.087-0.206] unit increase	Affymetrix [up to 6007810] (imputed)	N
991	chr3	53301968	53301969	rs9854669	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.1	Intergenic	rs9854669-A	0.4049	2E-9	(MTAG)	0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
991	chr3	53325248	53325249	rs189767158	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	3p21.1	DCP1A	rs189767158-?	NR	4E-8	(male)	4.9	[2.29-10.42]	Illumina [NR] (imputed)	N
992	chr3	53378244	53378245	rs2029213	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3p21.1	DCP1A	rs2029213-C	0.639	7E-6				Affymetrix, Illumina [2516789] (imputed)	N
992	chr3	53388949	53388950	rs35536048	31151762	Gelernter J	2019-04-08	Biol Psychiatry	Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.	Maximum habitual alcohol consumption	126,936 European ancestry individuals, 17,029 African American individuals	NA	3p21.1	NR	rs35536048-G	NR	1E-6	(AA)	0.166266	[0.099-0.234] unit increase	Affymetrix [up to 6007810] (imputed)	N
992	chr3	53418797	53418798	rs17053026	25599974	Zhang H	2015-01-19	Genet Epidemiol	A genome-wide association study of early spontaneous preterm delivery.	Spontaneous preterm birth (preterm delivery)	935 pre-term delivery mothers, 946 term delivery mothers	66 European ancestry pre-term delivery mothers, 110 African American pre-term delivery mothers, 110 Hispanic pre-term delivery mothers, 7 pre-term delivery mothers,  37 European ancestry term delivery mothers, 84 African American term delivery mothers, 74 Hispanic term delivery mothers, 5 term delivery mothers	3p21.1	DCP1A	rs17053026-?	0.95	5E-6		1.89	[NR]	Affymetrix [779326]	N
992	chr3	53440127	53440128	rs62252819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs62252819-A	0.7522	1E-8		0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
992	chr3	53440127	53440128	rs62252819	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.1	Intergenic	rs62252819-A	0.7522	2E-9	(MTAG)	0.0092	[0.0063-0.0121] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
992	chr3	53441375	53441376	rs10452033	25055868	Sano M	2014-07-23	Hum Mol Genet	Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.	Electrocardiographic traits	2,994 Japanese ancestry individuals	6,805 Korean ancestry individuals	3p21.1	CACNA1D, DCP1A	rs10452033-A	0.136	4E-7	(PR)	2.122	[NR] unit decrease	Illumina [~ 2500000]	N
992	chr3	53453262	53453263	rs552345	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NR	rs552345-?	NR	1E-6		4.856	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
992	chr3	53455299	53455300	rs116511141	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs116511141-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
992	chr3	53455568	53455569	rs2358740	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p21.1	NR	rs2358740-?	NR	4E-8		1.0510604	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
992	chr3	53455568	53455569	rs2358740	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.1	RPS25P4	rs2358740-G	NR	3E-7		1.0515248	[1.03-1.07]	Illumina [6627481] (imputed)	N
992	chr3	53455568	53455569	rs2358740	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p21.1	RPS25P4	rs2358740-G	NR	1E-6	(EA)	1.0577533	[1.04-1.08]	Illumina [6627481] (imputed)	N
992	chr3	53455568	53455569	rs2358740	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p21.1	intergenic	rs2358740-G	NR	7E-8		1.0537407	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
992	chr3	53455568	53455569	rs2358740	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3p21.1	CACNA1D	rs2358740-T	0.32	4E-9		0.2079	[0.14-0.28] unit decrease	Affymetrix [19941912] (imputed)	N
992	chr3	53455568	53455569	rs2358740	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p21.1	NR	rs2358740-G	NR	5E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
992	chr3	53457578	53457579	rs1531876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p21.1	SNORA26	rs1531876-A	NR	6E-10		0.0186388	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
992	chr3	53457578	53457579	rs1531876	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p21.1	SNORA26	rs1531876-A	NR	6E-10		0.0186921	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
992	chr3	53464054	53464055	rs114718455	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.1	CACNA1D	rs114718455-A	0.9651	4E-12		0.0354	[0.025-0.045] unit decrease	Affymetrix [18391927] (imputed)	N
992	chr3	53470600	53470601	rs188274086	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3p21.1	NR	rs188274086-G	0.007	3E-8	(Unifrac metric)	5.4242687	NR z-score increase	Illumina [5293637] (imputed)	N
993	chr3	53487278	53487279	rs2930176	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue/subcutaneous adipose tissue ratio	1,152 European ancestry males, 1,361 European ancestry females	NA	3p21.1	CACNA1D	rs2930176-A	0.52	6E-7		0.04	[NR] unit decrease	Affymetrix, Illumina [2473256] (imputed)	N
993	chr3	53511647	53511648	rs793202	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.1		rs793202-?	NR	5E-14				NR [~ 8900000] (imputed)	N
993	chr3	53512316	53512317	rs369306257	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	3p21.1	intergenic	rs369306257-C	5.0E-4	4E-20		14.3353	[11.27-17.4] mmHg increase	Affymetrix [NR] (imputed)	N
993	chr3	53525630	53525631	rs36078442	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p21.1	CACNA1D	rs36078442-A	0.4564	7E-6		0.0288	[0.016-0.041] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
993	chr3	53529139	53529140	rs312480	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.1		rs312480-T	0.102	2E-10		0.013	[0.0091-0.0169] unit decrease	NR [NR] (imputed)	N
993	chr3	53537878	53537879	rs6763768	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA		NR	rs6763768-?	NR	5E-6		0.2299	[0.13-0.33] unit decrease	Illumina [at least 560000] (imputed)	N
993	chr3	53553922	53553923	rs35593046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	3p21.1		rs35593046-T	NR	7E-21		0.0581	[0.046-0.07] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
993	chr3	53553922	53553923	rs35593046	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p21.1		rs35593046-T	NR	1E-18		0.0473	[0.037-0.058] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
993	chr3	53553922	53553923	rs35593046	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p21.1	NR	rs35593046-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
993	chr3	53553922	53553923	rs35593046	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3p21.1	CACNA1D	rs35593046-T	0.263655	5E-9		0.054404005	[0.036-0.073] unit decrease	Affymetrix [7288503] (imputed)	N
993	chr3	53553922	53553923	rs35593046	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p21.1	CACNA1D	rs35593046-T	0.262947	4E-11		0.046147037	[0.032-0.06] unit decrease	Affymetrix [7288503] (imputed)	N
993	chr3	53558011	53558012	rs3821843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3p21.1		rs3821843-A	NR	9E-21		0.0186	[0.015-0.023] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
993	chr3	53558011	53558012	rs3821843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	3p21.1		rs3821843-A	0.451749704	3E-18		0.0728989	[0.057-0.089] unit increase	Illumina [13134967] (imputed)	N
993	chr3	53558011	53558012	rs3821843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3p21.1		rs3821843-A	0.451749704	2E-14		0.06479806	[0.048-0.081] unit increase	Illumina [13134967] (imputed)	N
993	chr3	53558011	53558012	rs3821843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p21.1		rs3821843-A	NR	7E-21		0.019	[0.015-0.023] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
993	chr3	53558011	53558012	rs3821843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p21.1		rs3821843-A	NR	1E-15		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
993	chr3	53558011	53558012	rs3821843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p21.1		rs3821843-?	NR	3E-16				NR [~ 8900000] (imputed)	N
993	chr3	53558011	53558012	rs3821843	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p21.1		rs3821843-?	NR	7E-13				NR [~ 8900000] (imputed)	N
993	chr3	53558011	53558012	rs3821843	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.1	CACNA1D	rs3821843-G	0.6923	9E-19		0.3337	[0.26-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
993	chr3	53558011	53558012	rs3821843	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p21.1	NR	rs3821843-G		2E-8		0.332	unit decrease	Affymetrix [at least 2696785] (imputed)	N
993	chr3	53558011	53558012	rs3821843	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.1	NR	rs3821843-G		3E-12		0.291	unit decrease	Affymetrix [at least 2696785] (imputed)	N
993	chr3	53558011	53558012	rs3821843	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p21.1	NR	rs3821843-G		5E-6		0.18	unit decrease	Affymetrix [at least 2696785] (imputed)	N
993	chr3	53558011	53558012	rs3821843	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.1	NR	rs3821843-G		5E-8		0.151	unit decrease	Affymetrix [at least 2696785] (imputed)	N
993	chr3	53558011	53558012	rs3821843	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p21.1	NR	rs3821843-G		6E-8		0.139	unit decrease	Affymetrix [at least 2696785] (imputed)	N
993	chr3	53565627	53565628	rs3774427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	145,502 East Asian ancestry individuals	NA	3p21.1		rs3774427-G	0.121026	2E-16		0.043081	[0.033-0.053] unit increase	Illumina [13477767] (imputed)	N
993	chr3	53565627	53565628	rs3774427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	145,515 East Asian ancestry individuals	NA	3p21.1		rs3774427-G	0.121016	1E-13		0.0396597	[0.029-0.05] unit increase	Illumina [13477770] (imputed)	N
993	chr3	53565627	53565628	rs3774427	34593835	Takahashi Y	2021-09-30	Sci Rep	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.	Resistant hypertension	2,705 Japanese ancestry cases, 21,296 Japanese ancestry controls	NA	3p21.1		rs3774427-C	0.12	6E-6		1.21	[1.11-1.31]	Illumina [7199488] (imputed)	N
993	chr3	53565627	53565628	rs3774427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs3774427-C	0.88	2E-14	(Japanese)	0.8795	[0.65-1.1] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53565627	53565628	rs3774427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs3774427-C	0.8785	1E-13	(Japanese)	0.1478	[0.11-0.19] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53565627	53565628	rs3774427	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs3774427-C	0.8785	7E-14	(Japanese)	0.5492	[0.41-0.69] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53565627	53565628	rs3774427	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean arterial pressure	136,482 Japanese ancestry individuals	NA	3p21.1	CACNA1D	rs3774427-?	NR	3E-15		0.04642	[0.035-0.058] unit increase novel	Illumina [6108953] (imputed)	N
993	chr3	53565627	53565628	rs3774427	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Diastolic blood pressure	136,615 Japanese ancestry individuals	NA	3p21.1	CACNA1D	rs3774427-?	NR	1E-12		0.04141	[0.03-0.053] unit increase	Illumina [6108953] (imputed)	N
993	chr3	53575727	53575728	rs9821489	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p21.1	CACNA1D	rs9821489-A	0.4813	1E-13		0.4962	[0.36-0.63] mmHg increase	Affymetrix [NR] (imputed)	N
993	chr3	53578882	53578883	rs12715461	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p21.1	NR	rs12715461-A	0.5486	3E-14	(East Asian)	0.0858	[0.064-0.108] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53587058	53587059	rs3774442	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	NR	rs3774442-A	0.9143	8E-14	(East Asian)	0.8601	[0.63-1.09] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	145,505 East Asian ancestry individuals	NA	3p21.1		rs9814480-T	0.123892	2E-14		0.0387302	[0.029-0.049] unit increase	Illumina [13477770] (imputed)	N
993	chr3	53590464	53590465	rs9814480	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9814480-T	0.12	2E-14	(Japanese)	0.8742	[0.65-1.1] unit increase	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Pulse pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 Japanese ancestry individuals	3p21.1	CACNA1D	rs9814480-T	0.1239	8E-6	(Japanese)	0.3522	[0.2-0.51] unit increase	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9814480-T	0.1239	1E-15	(Japanese)	0.6426	[0.48-0.8] unit increase	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Hypertension	22,566 Japanese ancestry cases, 28,226 Japanese ancestry controls	8,809 East Asian ancestry cases, 13,663 East Asian ancestry controls, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9814480-T	0.1239	2E-13	(Japanese)	0.1465	[0.11-0.19] unit increase	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9814480-T	0.1239	6E-13	(Japanese)	0.5243	[0.38-0.67] unit increase	Illumina [6200000] (imputed)	N
993	chr3	53590464	53590465	rs9814480	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Systolic blood pressure	136,597 Japanese ancestry individuals	NA	3p21.1	CACNA1D	rs9814480-?	NR	3E-13		0.04209	[0.031-0.053] unit increase	Illumina [6108953] (imputed)	N
993	chr3	53595711	53595712	rs3774447	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs3774447-T	0.913	1E-15	(East Asian)	0.6595	[0.5-0.82] unit decrease	Illumina [6200000] (imputed)	N
993	chr3	53595711	53595712	rs3774447	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	NR	rs3774447-T	0.913	3E-15	(East Asian)	0.5832	[0.44-0.73] unit decrease	Illumina [6200000] (imputed)	N
994	chr3	53618356	53618357	rs9311507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.1	Intergenic	rs9311507-T	0.0689	3E-10	(MTAG)	0.0286	[0.02-0.037] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
994	chr3	53618356	53618357	rs9311507	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NR	rs9311507-?	NR	2E-6		4.77	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
994	chr3	53635594	53635595	rs9810888	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9810888-T	0.61	1E-7	(Japanese)	0.4101	[0.26-0.56] unit decrease	Illumina [6200000] (imputed)	N
994	chr3	53635594	53635595	rs9810888	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9810888-T	0.6074	8E-9	(Japanese)	0.3176	[0.21-0.43] unit decrease	Illumina [6200000] (imputed)	N
994	chr3	53635594	53635595	rs9810888	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3p21.1	CACNA1D	rs9810888-T	0.6074	5E-8	(Japanese)	0.271	[0.17-0.37] unit decrease	Illumina [6200000] (imputed)	N
994	chr3	53635594	53635595	rs9810888	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Systolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	3p21.1	CACNA1D	rs9810888-G	0.39	5E-8		0.53	[0.33-0.73] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
994	chr3	53635594	53635595	rs9810888	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Hypertension	5,065 Han Chinese ancestry cases, 4,404 Han Chinese ancestry controls	29,799 Han Chinese ancestry cases, 39,347 Han Chinese ancestry controls	3p21.1	CACNA1D	rs9810888-G	0.39	4E-6				Affymetrix, Illumina [2485448] (imputed)	N
994	chr3	53635594	53635595	rs9810888	25249183	Lu X	2014-09-23	Hum Mol Genet	Genome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.	Diastolic blood pressure	11,816 Han Chinese ancestry individuals	69,146 Han Chinese ancestry individuals	3p21.1	CACNA1D	rs9810888-G	0.39	4E-12		0.39	[0.27-0.51] unit increase	Affymetrix, Illumina [2485448] (imputed)	N
994	chr3	53650482	53650483	rs3774475	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	3p21.1		rs3774475-A	NR	8E-9		0.0376	[0.025-0.05] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
994	chr3	53662335	53662336	rs17237537	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p21.1		rs17237537-?	NR	2E-8				NR [~ 8900000] (imputed)	N
994	chr3	53675022	53675022	rs148306862	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p21.1	CACNA1D	rs148306862-T	0.7939	3E-9		0.0132	[0.0089-0.0175] unit decrease	Affymetrix [18391927] (imputed)	N
994	chr3	53680123	53680124	rs1401492	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	3p21.1	CACNA1D	rs1401492-C	0.07	5E-6	(HOMA-IR)	16.0	[9.00 - 22.00] % decrease	Affymetrix [872243]	N
994	chr3	53680123	53680124	rs1401492	21901158	Irvin MR	2011-08-25	PLoS One	Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.	Insulin resistance/response	1,040 African American individuals	NA	3p21.1	CACNA1D	rs1401492-C	0.07	3E-6	(Insulin)	15.0	[9.00 - 21.00] % decrease	Affymetrix [872243]	N
994	chr3	53684370	53684371	rs4687735	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs4687735-T	0.0475	2E-9		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
994	chr3	53712909	53712910	rs6809164	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p21.1		rs6809164-?	NR	6E-19				NR [~ 8900000] (imputed)	N
994	chr3	53730734	53730735	rs9841978	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3p21.1	CACNA1D	rs9841978-A	0.322134	2E-13		0.063494086	[0.047-0.08] unit increase	Affymetrix [7288503] (imputed)	N
994	chr3	53734194	53734195	rs76798021	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	3p21.1	NR	rs76798021-T	0.21	2E-6		0.023	[0.013-0.033] unit decrease	Affymetrix [27624732] (imputed)	N
994	chr3	53734442	53734443	rs7340705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p21.1		rs7340705-?	NR	3E-12				NR [~ 8900000] (imputed)	N
994	chr3	53734530	53734531	rs6445597	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p21.1	CACNA1D	rs6445597-A	0.321786	1E-10		0.04190085	[0.029-0.055] unit increase	Affymetrix [7288503] (imputed)	N
994	chr3	53734530	53734531	rs6445597	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p21.1		rs6445597-?	NR	2E-10				NR [~ 8900000] (imputed)	N
994	chr3	53738416	53738417	rs3774534	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3p21.1	CACNA1D	rs3774534-A	0.411	8E-6				Illumina [4404269] (imputed)	N
995	chr3	53745145	53745146	rs143955190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs143955190-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
995	chr3	53745624	53745625	rs2612012	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p21.1	CACNA1D	rs2612012-A	0.758	5E-6	(EA)	0.02	[0.011-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr3	53745624	53745625	rs2612012	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p21.1	CACNA1D	rs2612012-A	0.758	2E-6		0.02	[0.012-0.029] kg/m2 increase	Affymetrix, Illumina [2550021]	N
995	chr3	53746088	53746089	rs2633727	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs2633727-A	0.1534	4E-6	(Trans/trans-18:2, EA)	0.0016	[0.00082-0.00238] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53747373	53747374	rs13076366	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p21.1	NR	rs13076366-C	NR	2E-8		0.019	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
995	chr3	53747373	53747374	rs13076366	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p21.1	TKT, DCP1A, ACTR8, CHDH, IL17RB, SELK, CACNA2D3	rs13076366-A	0.223716820519931	5E-11		0.023565264	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
995	chr3	53749879	53749880	rs1020821	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs1020821-A	0.1532	5E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53750083	53750084	rs4453827	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.1	CACNA1D	rs4453827-C	0.238191	6E-11	(EA, interleukin-17 receptor B)	0.3326	[0.23-0.43] unit increase	Affymetrix [509946]	N
995	chr3	53750680	53750681	rs2169143	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs2169143-C	0.1522	5E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53751741	53751742	rs2633725	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p21.1	CHDH	rs2633725-T	0.1529	4E-8		0.015322577	[0.0099-0.0208] unit increase	Affymetrix [11514654] (imputed)	N
995	chr3	53758702	53758703	rs7649275	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.1		rs7649275-G	0.145	3E-12		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
995	chr3	53758702	53758703	rs7649275	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs7649275-A	0.8491	4E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53758949	53758950	rs11130380	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs11130380-T	0.6135	4E-10		0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
995	chr3	53760050	53760051	rs2612034	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs2612034-T	0.151	4E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53760480	53760480	rs34337122	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p21.1	CACNA1D	rs34337122-CG	0.849737	9E-9		0.0307824	[0.02-0.041] unit increase	Affymetrix [641018] (imputed)	N
995	chr3	53762568	53762569	rs1020820	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs1020820-A	0.8504	4E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53765662	53765663	rs2680664	25646338	Mozaffarian D	2014-12-10	Am J Clin Nutr	Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Trans fatty acid levels	8,013 European ancestry individuals	1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals	3p21.1	NR	rs2680664-A	0.1501	4E-6	(Trans/trans-18:2, EA)	0.0016	[0.001-0.0022] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
995	chr3	53766211	53766212	rs2306866	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p21.1	NR	rs2306866-T	0.614	2E-10	(Conditioned on chr3:52886605)	0.016675496	[0.012-0.022] unit decrease	NR [~ 10000000] (imputed)	N
995	chr3	53766211	53766212	rs2306866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.1	Intergenic	rs2306866-A	0.3872	1E-11	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
995	chr3	53766211	53766212	rs2306866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.1	Intergenic	rs2306866-A	0.386	2E-11	(MTAG)	0.009	[0.0065-0.0115] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
995	chr3	53767888	53767889	rs185334926	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	3p21.1	CACNA1D	rs185334926-T	NR	5E-7	(AA)	4.38		Illumina [at least 360704] (imputed)	N
995	chr3	53770587	53770588	rs6800641	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p21.1	DCP1A, CACNA1D	rs6800641-G	0.2455	3E-8		0.4116	[0.27-0.56] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
995	chr3	53773491	53773492	rs2612029	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p21.1	CACNA1D	rs2612029-T	0.162144	1E-17		0.0239229	[0.018-0.029] unit decrease	NR [16516521] (imputed)	N
995	chr3	53780081	53780082	rs2577326	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p21.1	CACNA1D	rs2577326-A	0.184	4E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
995	chr3	53789171	53789172	rs719260	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p21.1		rs719260-?	NR	3E-11				NR [~ 8900000] (imputed)	N
995	chr3	53799959	53799960	rs3774573	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p21.1	NR	rs3774573-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
995	chr3	53799959	53799960	rs3774573	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p21.1	NA	rs3774573-T	0.7448	3E-14		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
995	chr3	53799959	53799960	rs3774573	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p21.1	NA	rs3774573-T	0.7448	3E-14		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
995	chr3	53805405	53805406	rs3774585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (beta blocking agents)	20,367 East Asian ancestry cases, 158,359 East Asian ancestry controls	NA	3p21.1		rs3774585-C	0.59033926	3E-8		0.062426776	[0.04-0.084] unit increase	Illumina [13134967] (imputed)	N
995	chr3	53805576	53805577	rs3821866	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p21.1	NR	rs3821866-G	0.62174	4E-14		0.0221282	[0.016-0.028] unit increase	Affymetrix [16577424] (imputed)	N
995	chr3	53815864	53815865	rs11707420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3p21.1	NR	rs11707420-G	0.316807	3E-8		0.0116799	[0.0075-0.0159] unit increase	Affymetrix [16583148] (imputed)	N
995	chr3	53817357	53817358	rs3774589	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p21.1		rs3774589-?	NR	4E-11				NR [~ 8900000] (imputed)	N
995	chr3	53824135	53824136	rs3774604	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p21.1	CACNA1D	rs3774604-C	0.631085	5E-8		0.00793521	[0.0051-0.0108] unit increase	Affymetrix [12370749]	N
995	chr3	53830766	53830767	rs3774605	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs3774605-A	0.351	1E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
995	chr3	53837970	53837971	rs4687586	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3p21.1	CACNA1D	rs4687586-C	0.6905	6E-11		6.547	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
995	chr3	53842692	53842695	rs72556363	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	3p21.1		rs72556363-?	NR	9E-16		0.108037	[0.082-0.134] unit increase	NR [9800000] (imputed)	N
995	chr3	53842692	53842695	rs72556363	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	3p21.1		rs72556363-?	NR	2E-12		0.0917215	[0.065-0.118] unit increase	NR [9800000] (imputed)	N
995	chr3	53846740	53846741	rs877483	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p21.1	NR	rs877483-C	0.57	5E-10		0.00678982	[0.0047-0.0089] unit decrease	NR [9732723] (imputed)	N
995	chr3	53847061	53847062	rs893363	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p21.1	NR	rs893363-G		4E-9		0.07	[0.05-0.09] unit increase	NR [NR]	N
995	chr3	53847061	53847062	rs893363	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3p21.1	SELK, IL17RB, CACNA1D, CHDH, ACTR8	rs893363-A	0.6514	8E-6		0.0513	[0.029-0.074] unit increase	Illumina [2500000] (imputed)	N
995	chr3	53847407	53847408	rs14165	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p21.1	TKT, DCP1A, CACNA1D, CHDH, IL17RB	rs14165-?		9E-24				Affymetrix, Illumina [NR] (imputed)	N
995	chr3	53847407	53847408	rs14165	23396134	Verhoeven VJ	2013-02-10	Nat Genet	Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.	Refractive error	37,382 European ancestry individuals, 3,995 Chinese ancestry individuals, 2,273 Malay ancestry individuals, 2,108 Indian ancestry individuals	NA	3p21.1	CACNA1D	rs14165-A	0.32	2E-8		0.096	[0.063-0.129] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
995	chr3	53850004	53850005	rs11130381	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3p21.1		rs11130381-?	NR	2E-13				NR [~ 8900000] (imputed)	N
995	chr3	53851504	53851505	rs145601829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p21.1		rs145601829-?	NR	3E-9				NR [~ 8900000] (imputed)	N
995	chr3	53857054	53857055	rs76920163	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - amlodipine (UKB data field 20003_1140879802)	18,435 European ancestry cases, 437,841 European ancestry controls	NA	3p21.1		rs76920163-G	0.005334	2E-9		0.46	[0.31-0.61] unit increase	NR [11842647] (imputed)	N
995	chr3	53858163	53858164	rs2276838	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3p21.1	CHDH	rs2276838-C	0.460738	1E-8		0.046080083	[0.03-0.062] unit decrease	Affymetrix [7288503] (imputed)	N
996	chr3	53872549	53872550	rs114628701	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p21.1	NR	rs114628701-?	NR	8E-6		4.461	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
996	chr3	53876217	53876218	rs6801605	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p21.1	NR	rs6801605-?	NR	7E-19	(EA, interleukin-17 receptor B)			Affymetrix [509946]	N
996	chr3	53876217	53876218	rs6801605	25147954	Enroth S	2014-08-22	Nat Commun	Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs.	interleukin 17 receptor B levels	up to 653 individuals	up to 317 individuals	3p21.1	CHDH, IL17RB	rs6801605-A	0.34571	2E-18		0.56	[0.43-0.69] unit decrease	Illumina [4840842] (imputed)	N
996	chr3	53877148	53877149	rs6445607	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	NR	rs6445607-T	0.615	7E-58	(Interleukin-17 receptor B, IL17RB.5084.154.3)	0.4	[0.36-0.44] unit decrease	Affymetrix [10572788] (imputed)	N
996	chr3	53877148	53877149	rs6445607	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.1	NR	rs6445607-?	NR	6E-22	(IL17RB)	0.626333	[0.5-0.75] unit decrease	Illumina [11901634] (imputed)	N
996	chr3	53884913	53884914	rs55754695	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	3p21.1	NR	rs55754695-C	0.328	2E-7	(dominant, male)	1.852248	[1.46547584704614-2.34109788274726]	Affymetrix, Illumina [6131010] (imputed)	N
996	chr3	53892829	53892830	rs2232346	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	IL17RB	rs2232346-C	0.037	4E-77	(Interleukin-17 receptor B, IL17RB.5084.154.3)	1.18	[1.06-1.3] unit increase	Affymetrix [10572788] (imputed)	N
996	chr3	53975783	53975784	rs143479101	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXDC1	5,357 Icelandic ancestry individuals	NA	3p21.1		rs143479101-C	0.01574	3E-16		0.600388	[0.46-0.74] unit decrease	Illumina [7506463] (imputed)	N
996	chr3	53979133	53979134	rs142275326	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP2	5,359 Icelandic ancestry individuals	NA	3p21.1		rs142275326-C	0.01582	3E-24		0.746749	[0.6-0.89] unit increase	Illumina [7506463] (imputed)	N
997	chr3	54025319	54025321	rs1263106470	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	3p21.1		rs1263106470-C	0.1504	6E-8		3.346		Illumina [7608150]	N
997	chr3	54037535	54037536	rs78020898	28915241	Ahsan M	2017-09-15	PLoS Genet	The relative contribution of DNA methylation and genetic variants on protein biomarkers for human diseases.	Blood protein levels	up to 961 individuals	NA	3p21.1	NR	rs78020898-?	NR	6E-10	(IL17RB)	1.49511	[1.02-1.97] unit increase	Illumina [11901634] (imputed)	N
997	chr3	54081806	54081807	rs77191500	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Chronotype (sMEQ score)	7,436 Finnish ancestry individuals	NA	3p21.1	CABYRP1	rs77191500-G	NR	1E-6		0.689274	[0.41-0.97] unit decrease	Illumina [5842835] (imputed)	N
997	chr3	54093418	54093419	rs17744447	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	3p21.1	CACNA2D3	rs17744447-A	0.3458	8E-6	(EA)			Illumina [NR] (imputed)	N
997	chr3	54118563	54118564	rs6800181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p21.1		rs6800181-?	NR	8E-9				NR [~ 8900000] (imputed)	N
997	chr3	54118713	54118714	rs58861611	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)(time to event)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	3p21.1	IL17RB	rs58861611-?		3E-7	(East Asian)	3.4	[2.95-3.85]	Illumina [up to 8000000] (imputed)	N
997	chr3	54118713	54118714	rs58861611	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment in rheumatoid arthritis (herpes zoster)	165 European ancestry cases, 2,023 European ancestry controls, 56 East Asian ancestry cases, 237 East Asian ancestry controls, 23 Hispanic cases, 399 Hispanic controls	NA	3p21.1	IL17RB	rs58861611-?		2E-6	(East Asian)	5.06	[4.37-5.75]	Illumina [up to 8000000] (imputed)	N
997	chr3	54118713	54118714	rs58861611	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)(time to event)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	3p21.1	IL17RB	rs58861611-?		8E-10		3.6	[2.40-5.44]	Illumina [up to 8000000] (imputed)	N
997	chr3	54118713	54118714	rs58861611	33455090	Bing N	2021-01-17	Arthritis Rheumatol	Contribution of a European-Prevalent Variant near CD83 and an East Asian-Prevalent Variant near IL17RB to Herpes Zoster Risk in Tofacitinib Treatment: Results of Genome-Wide Association Study Meta-Analyses.	Response to tofacitinib treatment (herpes zoster)	165 European ancestry rheumatoid arthritis cases, 56 East Asian ancestry rheumatoid arthritis cases, 23 Hispanic rheumatoid arthritis cases, 56 European ancestry psoriasis cases, 10 East Asian ancestry psoriasis cases, 4 Hispanic psoriasis cases, 3,566 European ancestry controls, 317 East Asian ancestry controls, 644 Hispanic controls	NA	3p21.1	IL17RB	rs58861611-?		3E-6		3.8	[2.17-6.67]	Illumina [up to 8000000] (imputed)	N
998	chr3	54148769	54148770	rs2029118	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p21.1	SELK	rs2029118-?	NR	7E-7	(oxalate)	0.40320298	[0.24-0.56] unit increase	Affymetrix [at least 2500000] (imputed)	N
998	chr3	54153516	54153517	rs34084772	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p21.1	CACNA2D3	rs34084772-A	0.184	5E-13	(Voltage-dependent calcium channel subunit alpha-2/delta-3, CACNA2D3.8885.6.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
998	chr3	54154353	54154354	rs6802227	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CACNA2D3	5,360 Icelandic ancestry individuals	NA	3p21.1		rs6802227-C	0.4322	2E-17		0.160153	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
998	chr3	54156597	54156598	rs186723454	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p21.1	CACNA2D3	rs186723454-A	0.848307	5E-11		0.0183308	[0.013-0.024] unit increase	NR [16516521] (imputed)	N
998	chr3	54160325	54160326	rs61578424	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p21.1		rs61578424-G	0.852	1E-12		0.012	[0.0081-0.0159] unit decrease	NR [NR] (imputed)	N
998	chr3	54164522	54164523	rs1868513	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p21.1	CACNA2D3	rs1868513-G	0.54671875	1E-8	(CACNA2D3, 8885_6_3)	0.14054663	[0.093-0.189] unit decrease	Illumina [> 1000000] (imputed)	N
998	chr3	54166319	54166320	rs1562686	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p21.1	Intergenic	rs1562686-C	0.8548	2E-9	(MTAG)	0.0152	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
998	chr3	54166319	54166320	rs1562686	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p21.1	Intergenic	rs1562686-C	0.8548	1E-8		0.0157	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
998	chr3	54174236	54174237	rs7623444	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p21.1	Intergenic	rs7623444-A	0.5615	2E-11	(MTAG)	0.0112	[0.0079-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
998	chr3	54216116	54216117	rs9809064	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (total eye scanning length)	128 Han Chinese ancestry cases	NA	3p21.1	NR	rs9809064-?		2E-6		81.56	[42.3-120.82] unit decrease	Illumina [498648]	N
998	chr3	54230637	54230638	rs6445633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p21.1		rs6445633-A	0.3127	6E-9		0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
998	chr3	54230637	54230638	rs6445633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p21.1	Intergenic	rs6445633-A	0.3127	9E-11	(MTAG)	0.0092	[0.0065-0.0119] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
998	chr3	54230637	54230638	rs6445633	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p21.1	Intergenic	rs6445633-A	0.3201	1E-8	(MTAG)	0.0141	[0.0092-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
998	chr3	54233475	54233476	rs11917871	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p21.1	NR	rs11917871-?		5E-14		0.0166474	[0.012-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
998	chr3	54234721	54234722	rs4485754	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs4485754-A	NR	2E-8		5.652	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
998	chr3	54238057	54238058	rs13319916	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p21.1	NR	rs13319916-A	NR	4E-8		5.491	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
998	chr3	54242864	54242865	rs12495373	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	3p21.1	NR	rs12495373-?		1E-5		0.011	[0.0061-0.0159] unit increase	Illumina [7533529] (imputed)	N
998	chr3	54258937	54258938	rs11924650	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsessive compulsive disorder severity	376 Spanish ancestry individuals	NA	3p21.1	CACNA2D3	rs11924650-?	NR	6E-6		1.979962	NR unit increase	Illumina [338357]	N
999	chr3	54270540	54270541	rs12492780	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	3p21.1	CACNA2D3	rs12492780-T	NR	5E-6		2.8085	NR	Illumina [up to 4495750] (imputed)	N
999	chr3	54342587	54342588	rs55890718	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	RANTES levels	3,421 Finnish ancestry individuals	NA	3p21.1	NR	rs55890718-G		9E-6		0.1451	[0.081-0.209] SD units decrease	NR [10700000] (imputed)	N
999	chr3	54353239	54353240	rs7431992	26339675	Tosto G	2015-06-18	Ann Clin Transl Neurol	F-box/LRR-repeat protein 7 is genetically associated with Alzheimer's disease.	Alzheimer's disease (late onset)	2,451 Caribbean Hispanic cases, 2,063 Caribbean Hispanic controls	550 Caribbean Hispanic cases, 236 Caribbean Hispanic controls	3p21.1	CACNA2D3	rs7431992-A	0.1	2E-6	(adjusted for APOE)	1.46	[1.25-1.71]	Affymetrix, Illumina [8837542] (imputed)	N
999	chr3	54368361	54368362	rs144236963	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3p21.1	NR	rs144236963-?	NR	1E-6		0.813373	[0.49-1.14] unit decrease	NR [13958389] (imputed)	N
999	chr3	54371144	54371145	rs9818348	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	3p21.1	NR	rs9818348-G		6E-6				NR [525577]	N
999	chr3	54373418	54373419	rs78970585	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDILT	5,356 Icelandic ancestry individuals	NA	3p21.1		rs78970585-G	0.01423	2E-15		0.0988212	[0.074-0.123] unit increase	Illumina [7506463] (imputed)	N
999	chr3	54376989	54376990	rs7618327	30279531	Baselmans BML	2018-10-02	Sci Rep	A genetic perspective on the relationship between eudaimonic -and hedonic well-being.	Eudaimonic well-being	108,154 British ancestry individuals	NA	3p21.1	NR	rs7618327-G	0.12	3E-9		5.961	[NR] z score decrease	Affymetrix [~ 8600000] (imputed)	N
999	chr3	54378599	54378600	rs11711956	24375517	Lohmann K	2013-12-26	Mov Disord	Genome-wide association study in musician's dystonia: a risk variant at the arylsulfatase G locus?	Musician's dystonia	127 European ancestry cases, 984 European ancestry controls	116 European ancestry cases, 125 European ancestry controls	3p21.1	NR	rs11711956-?	0.24	2E-6		1.73	[1.38-2.18]	Affymetrix [557620]	N
1000	chr3	54484099	54484100	rs6445664	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary uric acid excretion	6,462 European ancestry individuals	NA	3p14.3	CACNA2D3	rs6445664-A	0.16	4E-7		15.85	NR unit decrease	NR [NR] (imputed)	N
1000	chr3	54494850	54494851	rs138753803	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	3p14.3	NR	rs138753803-?	NR	8E-6		1.2097	[0.75-1.67] unit decrease	Illumina [at least 560000] (imputed)	N
1000	chr3	54497773	54497774	rs149422347	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p14.3	NR	rs149422347-?	NR	2E-6	(Native Hawaiian)	1.482	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1001	chr3	54584586	54584587	rs75337321	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	3p14.3	NR	rs75337321-T	0.06	5E-6		2.21	[1.88-2.54]	NR [up to 6398204] (imputed)	N
1001	chr3	54608743	54608744	rs184899916	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p14.3	NR	rs184899916-C		8E-6		0.4056	[0.23-0.59] SD units decrease	NR [10700000] (imputed)	N
1001	chr3	54625016	54625017	rs35633152	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DPEP2	5,359 Icelandic ancestry individuals	NA	3p14.3		rs35633152-A	0.01609	2E-18		0.636576	[0.49-0.78] unit increase	Illumina [7506463] (imputed)	N
1001	chr3	54632546	54632547	rs13064588	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3p14.3	NR	rs13064588-?	NR	4E-6		1.2367	[NR]	Affymetrix [722112]	N
1001	chr3	54642227	54642228	rs56247223	28440896	Yin X	2017-04-25	Am J Med Genet B Neuropsychiatr Genet	Genome-wide meta-analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence.	Nicotine dependence	7,297 European ancestry cases, 5,577 European ancestry controls, 918 European ancestry whole genome sequenced cases, 921 European ancestry whole genome sequenced controls, African American cases, 1,500 African American controls	NA	3p14.3	CACNA2D3	rs56247223-A		4E-8	(AA)	0.07	[0.05-0.09] unit decrease	Illumina [at least 3251541] (imputed)	N
1002	chr3	54724559	54724560	rs17054293	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	3p14.3	NR	rs17054293-?	NR	4E-10	(Quadrant I (Philtrum), Segment 33)	0.042391453	NR unit decrease	NR [7417619] (imputed)	N
1002	chr3	54724559	54724560	rs17054293	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	3p14.3	NR	rs17054293-?	NR	3E-9	(Quadrant I (Philtrum), Segment 8)	0.027003255	NR unit decrease	NR [7417619] (imputed)	N
1002	chr3	54724559	54724560	rs17054293	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	3,566 European ancestry individuals	4,680 European ancestry individuals	3p14.3		rs17054293-A	0.268058691	3E-24				Illumina [7417619] (imputed)	N
1002	chr3	54729911	54729912	rs139882217	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	3p14.3	NR	rs139882217-?	0.04	7E-8	(EA)	4.78	[2.71-8.44]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1002	chr3	54731373	54731374	rs56063440	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 52)	2,595 Tanzanian ancestry individuals	NA	3p14.3		rs56063440-?	NR	1E-8				Illumina [NR] (imputed)	N
1002	chr3	54731373	54731374	rs56063440	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	3p14.3	CACNA2D3	rs56063440-?	NR	6E-11		0.03	[0.021-0.039] unit increase	Illumina [12039491] (imputed)	N
1002	chr3	54739909	54739910	rs551114	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p14.3		rs551114-A	NR	3E-6		4.6759486	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1002	chr3	54754789	54754790	rs35262746	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p14.3	NR	rs35262746-?	NR	5E-8				Illumina [7760689] (imputed)	N
1002	chr3	54774835	54774836	rs4955890	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3p14.3	NR	rs4955890-?		3E-8	(Corticospinal tract )			NR [8955960] (imputed)	N
1003	chr3	54800315	54800316	rs1820616	24315451	van der Valk RJ	2013-12-05	J Allergy Clin Immunol	Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.	Fractional exhaled nitric oxide (childhood)	5,131 European ancestry individuals, 1,155 Hispanic individuals, 2,572 individuals	NA	3p14.3	LRTM1	rs1820616-T	0.06	3E-6		0.113	[0.066-0.16] unit increase	Affymetrix, Illumina [2253077] (imputed)	N
1003	chr3	54828826	54828827	rs76263492	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p14.3	NR	rs76263492-G	0.9569	2E-8		0.0675	[0.044-0.091] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1003	chr3	54828826	54828827	rs76263492	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p14.3	NR	rs76263492-G	0.9579	3E-9		0.0675	[0.045-0.09] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1003	chr3	54828826	54828827	rs76263492	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p14.3	CACNA2D3	rs76263492-T	0.0452	6E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1003	chr3	54889779	54889780	rs1168696	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p14.3	CACNA2D3, CACNA2D3-AS1, LRTM1, ESRG	rs1168696-C	NR	6E-6	(sleep offset, weekdays)	0.2448	[0.14-0.35] unit increase	Affymetrix [7141204] (imputed)	N
1003	chr3	54900854	54900855	rs1880828	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	3p14.3	CACNA2D3	rs1880828-A	0.128216119	8E-6		1.1144239	[1.06271046-1.168653746]	Illumina [10439017] (imputed)	N
1004	chr3	54952553	54952554	rs144150699	29185836	Chen MH	2017-11-29	Platelets	Exome-chip meta-analysis identifies association between variation in ANKRD26 and platelet aggregation.	Platelet aggregation	3,664 European ancestry individuals, 549 Old Order Amish (founder/genetic isolate) individuals	1,184 European ancestry individuals, 613 African American individuals	3p14.3	LRTM1	rs144150699-C	0.001	5E-6	(ephinephrine low 1)	2.073	[1.18-2.96] unit increase	Illumina [129094]	N
1004	chr3	54996447	54996448	rs4955912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs4955912-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1004	chr3	55017748	55017749	rs3773582	24096698	De Vivo I	2013-10-06	Hum Genet	Genome-wide association study of endometrial cancer in E2C2.	Endometrial cancer	up to 2,695 European ancestry cases, up to 2,777 European ancestry controls	up to 3,235 cases, up to 12,059 controls	3p14.3	CACNA2D3	rs3773582-?	NR	8E-6	(European, Endometroid subtype)			Illumina [873935]	N
1004	chr3	55035873	55035874	rs4955826	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	3p14.3	CACNA2D3	rs4955826-?		5E-6	(EA)			Illumina [NR]	N
1005	chr3	55068254	55068255	rs4955920	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical thickness	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3p14.3	NR	rs4955920-T	0.7132	3E-6	(Rostral Middle Frontal)	0.003349959	[0.0019-0.0048] unit decrease	Affymetrix, Illumina [NR]	N
1005	chr3	55072690	55072691	rs9853714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p14.3		rs9853714-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1005	chr3	55110306	55110307	rs358079	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	3p14.3	CACNA2D3	rs358079-?		1E-7				Illumina [479403]	N
1005	chr3	55124566	55124567	rs62256214	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BST2	5,355 Icelandic ancestry individuals	NA	3p14.3		rs62256214-A	0.01238	2E-13		0.134041	[0.098-0.17] unit increase	Illumina [7506463] (imputed)	N
1005	chr3	55125136	55125137	rs193058367	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.3	Intergenic	rs193058367-A	0.998	2E-6	(AA)	0.199	unit increase	Illumina [NR] (imputed)	N
1005	chr3	55150676	55150677	rs1458979	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	3p14.3	CACNA2D3, WNT5A	rs1458979-G	0.5	4E-10		0.025	[0.017-0.033] unit decrease	Affymetrix [27624732] (imputed)	N
1005	chr3	55152318	55152319	rs12715478	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3p14.3	CACNA2D3	rs12715478-A	0.5941	6E-10		0.0159	[0.011-0.021] unit increase	Affymetrix [19819130] (imputed)	N
1005	chr3	55152318	55152319	rs12715478	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.3	CACNA2D3	rs12715478-A	0.5941	1E-24		0.025	[0.02-0.03] unit increase	Affymetrix [19819130] (imputed)	N
1005	chr3	55152318	55152319	rs12715478	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.3	CACNA2D3	rs12715478-A	0.5941	5E-8		0.0131	[0.0084-0.0178] unit increase	Affymetrix [19819130] (imputed)	N
1005	chr3	55158223	55158224	rs17759204	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p14.3	CACNA2D3	rs17759204-G	0.27	9E-11		1.07	[1.05-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
1005	chr3	55158223	55158224	rs17759204	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs17759204-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1006	chr3	55184212	55184213	rs6782380	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3p14.3	CACNA2D3	rs6782380-C	0.8	8E-6	(AA)	0.18	[0.1-0.26] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1006	chr3	55188272	55188273	rs11706236	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	3p14.3	RP11-889D3.1	rs11706236-?	0.86	4E-6		1.59	[1.32-1.96]	Illumina [2380486] (imputed)	N
1006	chr3	55268461	55268462	rs59457600	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	3p14.3	WNT5A, CACNA2D3	rs59457600-T	0.3883	8E-7		4.838		Affymetrix [757439]	N
1006	chr3	55300041	55300042	rs7614002	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p14.3		rs7614002-T	0.511133	2E-8		0.0113501	[0.0074-0.0153] unit decrease	Illumina [13479295] (imputed)	N
1007	chr3	55313399	55313400	rs358806	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	(see Zeggini 2007)	3p14.3	NR	rs358806-?	0.80	3E-6		1.16	[1.03-1.33]	Affymetrix [469557]	N
1007	chr3	55396571	55396572	rs1444868	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.3	NR	rs1444868-?	NR	3E-7				Affymetrix [NR]	N
1007	chr3	55411010	55411011	rs11130471	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	3p14.3	CACNA2D3, WNT5A	rs11130471-?	NR	9E-6		1.641	unit decrease (EA)	Illumina [610255]	N
1008	chr3	55473082	55473083	rs13059018	33904754	Cartwright R	2021-04-27	J Urol	Genome Wide Association Study Identifies Two Novel Loci Associated with Female Stress and Urgency Urinary Incontinence.	Stress urinary incontinence	2,072 European ancestry cases, 6,907 European ancestry controls	1,321 European ancestry cases, 2,748 European ancestry controls	3p14.3		rs13059018-C	NR	1E-6		0.7	[0.61-0.81]	Illumina [9700000] (imputed)	N
1008	chr3	55489834	55489835	rs11130474	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p14.3	intergenic	rs11130474-C	0.4618	2E-19		0.0172	[0.013-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1008	chr3	55491435	55491436	rs503022	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	3p14.3	NR	rs503022-A	0.1337	1E-7	(additive, male)	1.8054322	[1.45072582477492-2.24686519931603]	Affymetrix, Illumina [6131010] (imputed)	N
1008	chr3	55491809	55491810	rs13059073	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p14.3	WNT5A	rs13059073-T	0.5474	7E-6		0.0288	[0.016-0.041] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1008	chr3	55497952	55497953	rs11710229	24483146	Li L	2014-02-01	BMC Genomics	Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.	Response to cytadine analogues (cytosine arabinoside)	60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines	NA	3p14.3	NR	rs11710229-?		6E-6				Affymetrix, Illumina [1348798]	N
1008	chr3	55517046	55517047	rs815540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs815540-?	NR	5E-29				NR [~ 8900000] (imputed)	N
1008	chr3	55545913	55545914	rs73075478	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			ERC2	rs73075478-C	0.2362	2E-10		0.061261	[0.042-0.08] unit increase	Affymetrix [8165723] (imputed)	N
1008	chr3	55553804	55553805	rs73075492	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.3		rs73075492-C	0.22	3E-10		6.29	z score increase	Affymetrix [9061022] (imputed)	N
1008	chr3	55553804	55553805	rs73075492	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p14.3	CNTN2, TMEM81, RBBP5, DSTYK, TMCC2, NUAK2	rs73075492-?		3E-8				NR [7428630] (imputed)	N
1008	chr3	55553804	55553805	rs73075492	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p14.3	ERC2	rs73075492-?		4E-9				NR [7428630] (imputed)	N
1008	chr3	55555384	55555385	rs11720739	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p14.3	NR	rs11720739-?	NR	2E-23				Illumina [at least 7383741] (imputed)	N
1008	chr3	55563343	55563344	rs1875110	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p14.3	ERC2	rs1875110-T	0.95	4E-6	(Age 20-60 years)	0.1283	[0.074-0.183] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1008	chr3	55571759	55571760	rs1795648	21057379	Curtis D	2010-11-04	Psychiatr Genet	Case-case genome-wide association analysis shows markers differentially associated with schizophrenia and bipolar disorder and implicates calcium channel genes.	Bipolar disorder and schizophrenia	506 European ancestry bipolar 1 disorder cases, 523 European ancestry schizophrenia cases, 505 European ancestry controls	NA	3p14.3	ERC2	rs1795648-?	NR	6E-6				Affymetrix [302482]	N
1009	chr3	55585152	55585153	rs62251475	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs62251475-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1009	chr3	55585395	55585396	rs4271886	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	3p14.3		rs4271886-T	NR	5E-12		0.0837	[0.06-0.107] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
1009	chr3	55589803	55589804	rs1846593	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.3		rs1846593-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1009	chr3	55591994	55591995	rs11716980	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.3	ERC2	rs11716980-T	NR	1E-8		0.0163043	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1009	chr3	55600481	55600482	rs66620549	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	ERC2	rs66620549-G	0.758121	2E-9		0.0130234	[0.0088-0.0173] unit increase	NR [13737936] (imputed)	N
1009	chr3	55626914	55626915	rs1875108	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	3p14.3	NR	rs1875108-T		5E-6		0.1342	[0.076-0.192] unit increase	Illumina [12770451] (imputed)	N
1010	chr3	55718489	55718490	rs71309924	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.3		rs71309924-A	0.17	4E-16		8.15	z score increase	Affymetrix [9061022] (imputed)	N
1010	chr3	55718489	55718490	rs71309924	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.3		rs71309924-A	0.17	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
1010	chr3	55718489	55718490	rs71309924	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 280)	19,670 European ancestry individuals	NA	3p14.3		rs71309924-?	NR	4E-10				NR [9705931] (imputed)	N
1010	chr3	55780165	55780166	rs6801405	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs6801405-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1010	chr3	55782940	55782941	rs73075135	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.3	ERC2	rs73075135-T	1.0	3E-7	(AA)	0.671	unit increase	Illumina [NR] (imputed)	N
1010	chr3	55807254	55807255	rs6445754	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	3p14.3	ERC2	rs6445754-C	0.22	5E-6	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
1010	chr3	55818248	55818249	rs4955883	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p14.3		rs4955883-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1011	chr3	55840355	55840356	rs757200782	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p14.3		rs757200782-?	NR	7E-12		0.0259832	[0.019-0.033] unit decrease	Affymetrix [20259828] (imputed)	N
1011	chr3	55879268	55879269	rs112230981	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	3p14.3		rs112230981-G	0.04851	5E-8		0.03115	[0.02-0.042] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1011	chr3	55883600	55883601	rs563519250	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p14.3		rs563519250-A	0.0012971	8E-6		0.41411	[0.23-0.6] unit decrease	Affymetrix [15580782] (imputed)	N
1011	chr3	55934938	55934939	rs11708779	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Morning vs. evening chronotype	8,724 European ancestry evening chronotype individuals, 26,948 European ancestry morning chronotype individuals	NA	3p14.3	ERC2	rs11708779-G	0.65	1E-6		1.09	[1.06-1.13]	Affymetrix [73355677] (imputed)	N
1011	chr3	55934938	55934939	rs11708779	26955885	Lane JM	2016-03-09	Nat Commun	Genome-wide association analysis identifies novel loci for chronotype in 100,420 individuals from the UK Biobank.	Chronotype	100,420 European ancestry individuals	NA	3p14.3	ERC2	rs11708779-G	0.65	3E-8		0.026	[0.016-0.036] unit increase	Affymetrix [~ 73355677] (imputed)	N
1011	chr3	55935469	55935470	rs6774470	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.3	ERC2	rs6774470-A	0.305169	8E-9	(-32 ms)	0.0355554	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1011	chr3	55935469	55935470	rs6774470	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.3	ERC2	rs6774470-A	0.305169	6E-9	(-30 ms)	0.0357047	[0.024-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1011	chr3	55935469	55935470	rs6774470	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.3	ERC2	rs6774470-A	0.305169	2E-8	(-34 ms)	0.0348142	[0.023-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1011	chr3	55950128	55950129	rs11705830	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3p14.3	NR	rs11705830-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
1011	chr3	55954214	55954215	rs4111	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	3p14.3	ERC2	rs4111-A	0.15	1E-6		0.03	[0.01-0.05] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
1012	chr3	55982415	55982416	rs12635074	27494321	Jones SE	2016-08-05	PLoS Genet	Genome-Wide Association Analyses in 128,266 Individuals Identifies New Morningness and Sleep Duration Loci.	Morning vs. evening chronotype	114,765 British individuals	NA	3p14.3	ERC2	rs12635074-G	0.32	2E-6		1.0416667	[1.02-1.06]	NR [16760980] (imputed)	N
1012	chr3	55988393	55988394	rs73831818	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p14.3	NR	rs73831818-G	0.057	1E-10		0.014912	[0.01-0.019] unit increase	NR [9732723] (imputed)	N
1012	chr3	55988393	55988394	rs73831818	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p14.3	NR	rs73831818-G	0.057	5E-9		0.032043487	[0.021-0.043] unit increase	NR [~ 10000000] (imputed)	N
1012	chr3	56012811	56012812	rs1458065	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p14.3	ERC2, MIR3938, RNA5SP133	rs1458065-A	NR	2E-6	(daytime napping duration)	0.1346	[0.079-0.191] unit increase	Affymetrix [7141204] (imputed)	N
1012	chr3	56040979	56040980	rs1379716	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	WNT5A	rs1379716-?	NR	5E-6	(CE 14:0)	0.45300555	[0.26-0.65] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1012	chr3	56092897	56092898	rs6445765	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	3p14.3	ERC2	rs6445765-C	0.6279	3E-6		1.1271586		Illumina [8265319] (imputed)	N
1012	chr3	56093131	56093132	rs201383881	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.3	NR	rs201383881-A	0.154	3E-10				NR [9056863] (imputed)	N
1013	chr3	56114860	56114861	rs12488237	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p14.3		rs12488237-T	0.943	6E-9		0.016	[0.01-0.022] unit decrease	NR [NR] (imputed)	N
1013	chr3	56114860	56114861	rs12488237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p14.3	NA	rs12488237-T	0.9391	3E-10		0.0225	[0.015-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1013	chr3	56114860	56114861	rs12488237	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p14.3	NA	rs12488237-T	0.9391	3E-10		0.0225	[0.015-0.03] unit decrease	NR [~ 27400000] (imputed)	N
1013	chr3	56156416	56156417	rs73091252	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	ERC2	rs73091252-T	0.983892	9E-12		0.0491509	[0.035-0.063] unit decrease	NR [13737936] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	ERC2	rs11915970-A	0.883242	4E-44		0.0404805	[0.035-0.046] unit decrease	NR [13737936] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.3		rs11915970-?	NR	3E-51				NR [~ 8900000] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p14.3		rs11915970-?	NR	4E-44		0.0453374	[0.039-0.052] unit decrease	Affymetrix [20259828] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs11915970-A	0.882408	1E-6	(men)	0.0353747	[0.02-0.051] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs11915970-A	0.881378	4E-14		0.0383746	[0.028-0.049] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56169964	56169965	rs11915970	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs11915970-A	0.880479	5E-9	(women)	0.0417815	[0.028-0.056] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56186235	56186236	rs1352010	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	4,629 African American individuals, 5,131 European ancestry individuals	801 African American individuals, 1,746 European ancestry individuals	3p14.3	ERC2	rs1352010-?	NR	9E-6				Illumina [up to 10421983] (imputed)	N
1013	chr3	56192883	56192884	rs1352014	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p14.3		rs1352014-?	NR	3E-38		0.0255617	[0.021-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1013	chr3	56192883	56192884	rs1352014	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs1352014-A	0.452513	6E-8	(men)	0.0284193	[0.018-0.038] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56192883	56192884	rs1352014	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs1352014-A	0.451968	5E-16		0.0262679	[0.02-0.033] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56192883	56192884	rs1352014	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3p14.3	ERC2	rs1352014-A	0.451492	6E-8	(women)	0.023137	[0.014-0.032] unit decrease	NR [17166351] (imputed)	N
1013	chr3	56225328	56225329	rs9830173	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Trochanter size	28,944 European ancestry individuals	8,065 European ancestry individuals, 5,711 East Asian ancestry individuals	3p14.3	ERC2	rs9830173-C	0.38353	1E-7		0.042	NR unit increase	Illumina [33400000] (imputed)	N
1013	chr3	56225328	56225329	rs9830173	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Intertrochanteric region size	28,936 European ancestry individuals	7,912 European ancestry individuals, 5,696 East Asian ancestry individuals	3p14.3	ERC2	rs9830173-C	0.384	3E-11		0.053	[0.037-0.069] unit increase	Illumina [33400000] (imputed)	N
1013	chr3	56225328	56225329	rs9830173	31053729	Styrkarsdottir U	2019-05-03	Nat Commun	GWAS of bone size yields twelve loci that also affect height, BMD, osteoarthritis or fractures.	Hip bone size	28,900 European ancestry individuals	7,912 European ancestry individuals, 5,699 East Asian ancestry individuals	3p14.3	ERC2	rs9830173-C	0.384	8E-14		0.055	[0.041-0.07] unit increase	Illumina [33400000] (imputed)	N
1013	chr3	56226040	56226041	rs7635184	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	3p14.3	NR	rs7635184-A	0.6015	2E-7		0.0063	[0.0039-0.0087] unit decrease	NR [7666894] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	9E-6	(TAG 46:1)	0.24419363	[0.14-0.35] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	5E-6	(TAG 50:3)	0.2507233	[0.14-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	4E-6	(TAG 48:1)	0.2543479	[0.15-0.36] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	3E-6	(TAG 48:2)	0.25772288	[0.15-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	2E-7	(TAG 46:0)	0.3007619	[0.19-0.41] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	1E-6	(TAG 50:2)	0.26659393	[0.16-0.37] unit increase	Affymetrix [at least 2500000] (imputed)	N
1013	chr3	56227921	56227922	rs9817254	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	CCDC66	rs9817254-?	NR	1E-6	(TAG 48:0)	0.2684079	[0.16-0.38] unit increase	Affymetrix [at least 2500000] (imputed)	N
1014	chr3	56247262	56247263	rs62253567	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p14.3		rs62253567-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1014	chr3	56249397	56249398	rs4425224	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p14.3	ERC2	rs4425224-C	0.105039	3E-8		0.0124424	[0.0081-0.0168] unit increase	Affymetrix [12370749]	N
1014	chr3	56255919	56255920	rs111674193	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs111674193-G	0.962	1E-11				Affymetrix [10369434] (imputed)	N
1014	chr3	56263533	56263534	rs4974186	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	ERC2	rs4974186-G	0.446864	2E-29		0.0213513	[0.018-0.025] unit decrease	NR [13737936] (imputed)	N
1014	chr3	56263533	56263534	rs4974186	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p14.3		rs4974186-?	NR	5E-39		0.0259077	[0.022-0.03] unit decrease	Affymetrix [20259828] (imputed)	N
1014	chr3	56276212	56276213	rs12634374	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs12634374-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1014	chr3	56280162	56280163	rs11130504	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 206)	19,670 European ancestry individuals	NA	3p14.3		rs11130504-?	NR	2E-8				NR [9705931] (imputed)	N
1014	chr3	56282977	56282978	rs17216573	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs17216573-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1015	chr3	56383403	56383404	rs6445782	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	3p14.3	NR	rs6445782-G		9E-6				Illumina [458865]	N
1015	chr3	56408257	56408258	rs2316897	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs2316897-G	0.532	4E-18				Affymetrix [10369434] (imputed)	N
1015	chr3	56435394	56435395	rs1546060	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p14.3	ERC2, CCDC66, RNA5SP133, FAM208A	rs1546060-C	NR	5E-6	(resting duration)	0.1922	[0.11-0.27] unit increase	Affymetrix [7141204] (imputed)	N
1016	chr3	56508225	56508226	rs7611444	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.3	NR	rs7611444-?	NR	1E-12				Affymetrix [NR]	N
1016	chr3	56530708	56530709	rs2054989	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p14.3	ERC2	rs2054989-?	NR	6E-7	(NeckW1rf)			Affymetrix [70897]	N
1016	chr3	56532905	56532906	rs77005134	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1b levels	8,243 Finnish ancestry individuals	NA	3p14.3	NR	rs77005134-C	NR	5E-6		0.3845	[0.22-0.55] SD units increase	NR [10700000] (imputed)	N
1016	chr3	56534433	56534434	rs1907462	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p14.3	ERC2, CCDC66, FAM208A, ARHGEF3	rs1907462-?		2E-10				Affymetrix, Illumina [NR] (imputed)	N
1016	chr3	56541634	56541635	rs11715144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p14.3	ERC2	rs11715144-G	NR	1E-11		0.0220674	[0.016-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1016	chr3	56559243	56559244	rs1388251	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.3	CCDC66	rs1388251-A	0.7372	4E-7	(EA,men)	0.0289	[0.018-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr3	56559243	56559244	rs1388251	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.3	CCDC66	rs1388251-A	0.7372	2E-8	(EA)	0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1016	chr3	56563339	56563340	rs6445797	25317112	Oh S	2014-09-30	Genomics Inform	Epidemiological and genome-wide association study of gastritis or gastric ulcer in korean populations.	Gastritis	977 Korean ancestry female cases, 3,622 Korean ancestry female controls, 804 Korean ancestry male cases, 3,335 Korean ancestry male controls	NA	3p14.3	intergenic	rs6445797-C	NR	2E-6	(Females)	1.402	[NR]	NR [349184]	N
1016	chr3	56570906	56570907	rs7625428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.3		rs7625428-T	0.6036	1E-11		0.0098	[0.0071-0.0125] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1016	chr3	56570906	56570907	rs7625428	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.3	Intergenic	rs7625428-T	0.6036	5E-14	(MTAG)	0.0101	[0.0076-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr3	56577609	56577609	rs376015565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p14.3	CCDC66	rs376015565-C	NR	1E-8		0.0175874	[0.012-0.024] unit decrease	Affymetrix [323123] (imputed)	N
1016	chr3	56586370	56586371	rs7653344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p14.3	Intergenic	rs7653344-A	0.4628	6E-13	(MTAG)	0.0129	[0.0094-0.0164] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr3	56586370	56586371	rs7653344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p14.3	Intergenic	rs7653344-A	0.4628	1E-9		0.0119	[0.008-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1016	chr3	56586370	56586371	rs7653344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p14.3	Intergenic	rs7653344-A	0.4629	5E-14	(MTAG)	0.0124	[0.0091-0.0157] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr3	56586370	56586371	rs7653344	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p14.3	Intergenic	rs7653344-A	0.4664	3E-12	(MTAG)	0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1016	chr3	56588373	56588374	rs34869541	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs34869541-A	0.892	4E-13				Affymetrix [10369434] (imputed)	N
1016	chr3	56607948	56607952	rs150280972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p14.3	CCDC66	rs150280972-A	0.470852	1E-12		0.015772793	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1016	chr3	56620556	56620557	rs767602469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.3	CCDC66	rs767602469-CA	NR	5E-9		0.016677	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1017	chr3	56655201	56655202	rs9823108	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs9823108-C	0.638	6E-20				Affymetrix [10369434] (imputed)	N
1017	chr3	56664851	56664852	rs6445804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3p14.3		rs6445804-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1017	chr3	56665014	56665015	rs57800049	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.3	FAM208A	rs57800049-T	NR	8E-9		0.0192325	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1017	chr3	56667681	56667682	rs9835332	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3p14.3	C3orf63	rs9835332-C	0.46	4E-22		0.028	[0.022-0.034] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1017	chr3	56667681	56667682	rs9835332	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p14.3	C3orf63	rs9835332-C	0.46	5E-13		0.026	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1017	chr3	56669147	56669148	rs10212341	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.3	C3orf63	rs10212341-?	NR	5E-6	(TAG 52:4)	0.1665892	[0.095-0.238] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1017	chr3	56678368	56678369	rs114441046	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs114441046-T	0.963	1E-19				Affymetrix [10369434] (imputed)	N
1017	chr3	56686328	56686329	rs6762851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p14.3		rs6762851-C	NR	3E-35		0.0174	[0.015-0.02] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1017	chr3	56686328	56686329	rs6762851	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p14.3	TASOR	rs6762851-T	0.6427	1E-28		0.0218	[0.018-0.026] unit increase	Affymetrix [18391927] (imputed)	N
1017	chr3	56686328	56686329	rs6762851	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs6762851-?	NR	8E-47				NR [~ 8900000] (imputed)	N
1017	chr3	56686328	56686329	rs6762851	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p14.3	NR	rs6762851-?	NR	2E-7	(male)	0.19057	[0.12-0.26] unit decrease	Affymetrix [7794483] (imputed)	N
1017	chr3	56686328	56686329	rs6762851	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p14.3	NR	rs6762851-?	NR	1E-10		0.1488	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
1017	chr3	56692320	56692321	rs4681725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of lipoprotein particles	115,082 European ancestry individuals	NA	3p14.3		rs4681725-T	0.584518	3E-8		0.0218547	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1017	chr3	56692320	56692321	rs4681725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3p14.3		rs4681725-T	0.584518	2E-8		0.02315	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1017	chr3	56692320	56692321	rs4681725	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3p14.3	FAM208A	rs4681725-T	0.224	4E-9	(AA)	0.046	[0.03-0.062] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1017	chr3	56692320	56692321	rs4681725	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3p14.3	FAM208A	rs4681725-T		2E-26				Affymetrix, Illumina [17972582] (imputed)	N
1017	chr3	56692320	56692321	rs4681725	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	3p14.3	FAM208A	rs4681725-T	0.227	2E-9	(AA)	0.077	[0.052-0.102] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
1017	chr3	56695059	56695060	rs7619465	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.3	FAM208A	rs7619465-A	NR	5E-13		0.0223482	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1017	chr3	56701327	56701328	rs9845655	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.3	FAM208A	rs9845655-T		3E-7		0.215	unit increase	Affymetrix [at least 2696785] (imputed)	N
1017	chr3	56701327	56701328	rs9845655	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.3	FAM208A	rs9845655-T		5E-10		0.161	unit increase	Affymetrix [at least 2696785] (imputed)	N
1017	chr3	56715362	56715363	rs4681994	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p14.3	NR	rs4681994-?	NR	1E-6		4.864	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1017	chr3	56726645	56726646	rs9827472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.3		rs9827472-T	0.3601	2E-9	(conditional-joint)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1017	chr3	56726645	56726646	rs9827472	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3p14.3	FAM208A	rs9827472-T	0.37	4E-10		0.177	[0.12-0.24] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1017	chr3	56735179	56735180	rs6773931	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	3p14.3	intergenic	rs6773931-A	0.80	8E-8		0.053	[0.033-0.073] unit decrease	Affymetrix, Illumina [3310998] (imputed)	N
1017	chr3	56736941	56736942	rs11130543	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p14.3		rs11130543-T	NR	8E-38		0.0231	[0.02-0.027] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1017	chr3	56736941	56736942	rs11130543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p14.3		rs11130543-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1017	chr3	56737256	56737257	rs7628922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.3	FAM208A	rs7628922-T	NR	4E-8		0.0171228	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1017	chr3	56739922	56739923	rs6805910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p14.3	intergenic	rs6805910-C	0.4161	7E-14		0.02737719	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1017	chr3	56741584	56741585	rs9813229	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p14.3	ARHGEF3	rs9813229-A	0.62	3E-9				NR [> 9500000] (imputed)	N
1017	chr3	56742849	56742850	rs35773782	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p14.3	ARHGEF3	rs35773782-G	0.3601	5E-6		0.0302	[0.017-0.043] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1017	chr3	56744261	56744261	rs149804345	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p14.3		rs149804345-AAAAAAC	0.311477	6E-41		0.032371357	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1017	chr3	56744261	56744261	rs149804345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p14.3	intergenic	rs149804345-AAAAAAC	0.3097	1E-20		0.03618318	[0.029-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1017	chr3	56744261	56744261	rs149804345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3p14.3	intergenic	rs149804345-AAAAAAC	0.3097	3E-16		0.03165101	[0.024-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1017	chr3	56744261	56744261	rs149804345	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3p14.3	intergenic	rs149804345-AAAAAAC	0.3097	3E-18		0.0336944	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1017	chr3	56744659	56744660	rs11927033	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.3	ARHGEF3	rs11927033-G	NR	2E-8		0.0161027	[0.01-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1017	chr3	56748185	56748186	rs6445817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p14.3		rs6445817-A	NR	9E-33		0.0208	[0.017-0.024] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1017	chr3	56748185	56748186	rs6445817	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p14.3	NR	rs6445817-A	0.319396	5E-52		0.030071	[0.026-0.034] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1017	chr3	56748226	56748227	rs6445818	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p14.3		rs6445818-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1018	chr3	56754232	56754233	rs6445821	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3p14.3	ARHGEF3	rs6445821-A	0.321349	9E-9		0.037174966	[0.025-0.05] unit decrease	Affymetrix [7288503] (imputed)	N
1018	chr3	56759691	56759692	rs4681767	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	3p14.3	ARHGEF3	rs4681767-T	0.429	8E-6	(IIV)	0.18	[0.1-0.26] unit decrease	Illumina [799713]	N
1018	chr3	56768999	56769000	rs7631008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p14.3		rs7631008-?	NR	3E-43				NR [~ 8900000] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs3772219-C	0.341577	1E-47				Affymetrix, Illumina [24653286] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p14.3	NR	rs3772219-C	0.32169	3E-43		0.027079	[0.023-0.031] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs3772219-C	0.341197	1E-50				Affymetrix, Illumina [24558453] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p14.3	NR	rs3772219-C	0.321825	1E-45		0.027984	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p14.3	ARHGEF3	rs3772219-C		2E-28		0.026	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1018	chr3	56771250	56771251	rs3772219	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	3p14.3	ARHGEF3	rs3772219-C	0.342664209637181	7E-6		0.21736716	[0.12-0.31] unit decrease	Illumina [247039]	N
1018	chr3	56774215	56774215	rs11459029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p14.3	ARHGEF3	rs11459029-CA	0.329175	2E-36		0.03024882	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56774215	56774215	rs11459029	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p14.3	ARHGEF3	rs11459029-CA	0.3276	7E-42		0.0521714	[0.045-0.06] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56776907	56776908	rs4681794	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p14.3	ARHGEF3	rs4681794-C	0.6394	1E-9		0.2105	[0.14-0.28] mmHg increase	Affymetrix [NR] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p14.3		rs2029466-T	NR	6E-31		0.0199	[0.017-0.023] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p14.3		rs2029466-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p14.3		rs2029466-C	0.692	2E-28				Affymetrix [10369434] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p14.3	ARHGEF3	rs2029466-T	0.307599	6E-36		0.030081673	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p14.3	ARHGEF3	rs2029466-T	0.307612	2E-41		0.03236668	[0.028-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56780002	56780003	rs2029466	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs2029466-T	0.326304	1E-56				Affymetrix, Illumina [24332387] (imputed)	N
1018	chr3	56797767	56797768	rs7627580	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	3p14.3	ARHGEF3	rs7627580-G	0.622	3E-6		1.39	[1.21-1.61]	Affymetrix [up to 27494467] (imputed)	N
1018	chr3	56798494	56798495	rs13100723	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p14.3	ARHGEF3	rs13100723-A	0.119	1E-6	(GLU )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1018	chr3	56802711	56802712	rs12054026	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p14.3		rs12054026-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1018	chr3	56806186	56806187	rs139360359	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p14.3		rs139360359-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1018	chr3	56809819	56809820	rs9880418	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3	ARHGEF3	rs9880418-G	0.549148	1E-11		0.024548214	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56812158	56812159	rs902226	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.3	NR	rs902226-?	NR	1E-8				Affymetrix [NR]	N
1018	chr3	56812449	56812450	rs2317250	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs2317250-T	0.573	2E-38				Affymetrix [10369434] (imputed)	N
1018	chr3	56834798	56834799	rs13098914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p14.3	ARHGEF3	rs13098914-T	0.5775	2E-32		0.04328911	[0.036-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56835760	56835761	rs3732508	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3	ARHGEF3	rs3732508-A	0.576976	5E-15		0.018846098	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56848998	56848999	rs6445826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs6445826-C	0.459288	4E-10				Affymetrix, Illumina [24649327] (imputed)	N
1018	chr3	56848998	56848999	rs6445826	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p14.3	NR	rs6445826-C	0.498475	4E-11		0.01247	[0.0088-0.0162] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Pyruvate levels	114,749 European ancestry individuals	NA	3p14.3		rs1354034-T	0.399315	1E-20		0.0392876	[0.031-0.048] unit decrease	NR [11722792] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BMP7	5,356 Icelandic ancestry individuals	NA	3p14.3		rs1354034-T	0.383	3E-28		0.204836	[0.17-0.24] unit increase	Illumina [7506463] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	3p14.3	NR	rs1354034-C	0.444089	2E-35		0.0268	[0.022-0.031] unit decrease	Affymetrix [23037915] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p14.3		rs1354034-C	NR	5E-670		0.1061	[0.1-0.11] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	3p14.3		rs1354034-C	0.54246	9E-40		0.0437015	[0.037-0.05] unit increase	Illumina [13478928] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p14.3		rs1354034-C	NR	2E-14		0.0162	[0.012-0.02] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3p14.3		rs1354034-C	NR	7E-13		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	3p14.3		rs1354034-C	0.474812	6E-76		7.2384076	[6.47-8.01] unit increase	NR [NR]	N
1018	chr3	56849748	56849749	rs1354034	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Mean platelet volume	7,440 African American individuals, 5,466 Hispanic or Latin American individuals, 10,120 European ancestry individuals, 447 East Asian ancestry individuals, 12 individuals	7,857 African ancestry individuals	3p14.3		rs1354034-C	0.437173	2E-66		0.167145	[0.15-0.19] unit decrease	NR [NR]	N
1018	chr3	56849748	56849749	rs1354034	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p14.3		rs1354034-T	0.4	5E-155				Affymetrix [10369434] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs1354034-T	0.4	2E-320				Affymetrix [10369434] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	27,236 European ancestry individuals	NA	3p14.3		rs1354034-T	0.4307	8E-24		0.0973	[0.078-0.116] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	21,347 Hispanic or Latin American individuals	NA	3p14.3		rs1354034-T	0.5932	1E-10		0.0574	[0.04-0.075] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	3p14.3		rs1354034-T	0.2623	2E-6		0.066	[0.039-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	27,236 European ancestry individuals	NA	3p14.3		rs1354034-T	0.5933	4E-12		0.1123	[0.081-0.144] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	21,347 Hispanic or Latin American individuals	NA	3p14.3		rs1354034-T	0.4187	9E-13		0.1345	[0.098-0.171] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Mean platelet volume	16,201 African American or Afro-Caribbean individuals	NA	3p14.3		rs1354034-T	0.2583	6E-6		0.0973	[0.055-0.139] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Proheparin-binding EGF-like growth factor levels	21,758 European ancestry individuals	9,173 individuals	3p14.3		rs1354034-T	0.39	2E-8		0.0502	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600378	5E-23		0.022512268	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600375	8E-23		0.02240652	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.604517	2E-25		0.024007946	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.604519	9E-692		0.12918106	[0.12-0.13] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.604481	2E-1592		0.23499349	[0.23-0.24] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600304	7E-12		0.015471136	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600297	6E-22		0.021672897	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600354	3E-14		0.017266031	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.600348	8E-15		0.017626256	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	8,188 South Asian ancestry individuals	NA	3p14.3	NR	rs1354034-T	0.469468	1E-18		0.136096	[0.11-0.17] SD units decrease	Affymetrix, Illumina [28492373] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	3p14.3	NR	rs1354034-T	0.734269	9E-15		0.10491	[0.078-0.131] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	3p14.3	NR	rs1354034-T	0.457109	2E-36		0.046767	[0.039-0.054] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	8,189 South Asian ancestry individuals	NA	3p14.3	NR	rs1354034-T	0.469471	9E-49		0.225821	[0.2-0.26] SD units increase	Affymetrix, Illumina [28493265] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	10,737 African American or Afro-Caribbean and African ancestry individuals	NA	3p14.3	NR	rs1354034-T	0.761034	1E-21		0.155809	[0.12-0.19] SD units increase	Affymetrix, Illumina [36042313] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs1354034-C	0.582467	2E-31				Affymetrix, Illumina [23472807] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p14.3	NR	rs1354034-C	0.600214	6E-32		0.022666	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Platelet count	8,850 African American individuals, 18,949 Hispanic/Latino individuals, 541 Asian ancestry individuals, 603 Native American ancestry individuals, 385 individuals	NA	3p14.3	NR	rs1354034-?	NR	2E-23		5.314807	[4.27-6.36] unit increase	Illumina [30743395] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	31194788	Read RW	2019-06-13	PLoS One	GWAS and PheWAS of red blood cell components in a Northern Nevadan cohort.	Mean platelet volume	Up to 53 African American individuals, 100 Asian ancestry individuals, 4,175 European ancestry individuals, 138 Hispanic or Latin American individuals, 30 Native American individuals, 11 Pacific Islander ancestry individuals, 168 unknown ancestry individuals	NA	3p14.3	Intergenic	rs1354034-T	0.4114	2E-13		0.1546	[0.11-0.2] fL increase	Illumina [498916]	N
1018	chr3	56849748	56849749	rs1354034	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-?	NR	5E-27		0.04552	[0.037-0.054] unit increase novel	Illumina [6108953] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	29066854	Lin BD	2017-11-01	J Hum Genet	2SNP heritability and effects of genetic variants for neutrophil-to-lymphocyte and platelet-to-lymphocyte ratio.	Platelet count	5,901 Dutch ancestry individuals	2,538 individuals	3p14.3	ARHGEF3	rs1354034-?	NR	3E-13				Affymetrix, Illumina, Perlegen [6010458] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p14.3	ARHGEF3	rs1354034-T	0.3798995	6E-11	(EA, Dynein light chain roadblock-type 1)	0.2938	[0.21-0.38] unit decrease	Affymetrix [509946]	N
1018	chr3	56849748	56849749	rs1354034	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p14.3	ARHGEF3	rs1354034-T	0.3798995	5E-13	(EA, Inosine-5'-monophosphate dehydrogenase 1)	0.3282	[0.24-0.42] unit decrease	Affymetrix [509946]	N
1018	chr3	56849748	56849749	rs1354034	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p14.3	ARHGEF3	rs1354034-T	0.3798995	1E-9	(EA, Methionine aminopeptidase 2)	0.2766	[0.19-0.36] unit decrease	Affymetrix [509946]	N
1018	chr3	56849748	56849749	rs1354034	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Platelet count	2,083 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-?	0.319	4E-9		2.6	[NR] 1,000/?L increase	NR [16536512] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Mean platelet volume	6,228 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-?	0.317	1E-14		0.033	[NR] fL decrease	NR [16536512] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.5988	4E-10		0.02278417	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.5988	4E-10		0.02286776	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.6034	2E-21		0.03542415	[0.028-0.043] unit increase	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.6023	9E-301		0.137851	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.6033	1E-833		0.2283055	[0.22-0.24] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.5989	3E-12		0.02554402	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	26805783	Schick UM	2016-01-21	Am J Hum Genet	Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans.	Platelet count	12,491 Hispanic/Latin American individuals	7,170 Hispanic/Latin American individuals	3p14.3	ARHGEF3	rs1354034-T	0.57	2E-13		5.87	[4.3-7.44] unit decrease	Illumina [2232944] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Platelet count	13,582 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-T	0.61	6E-24		7.97	[NR] unit increase	Illumina [476395]	N
1018	chr3	56849748	56849749	rs1354034	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	3p14.3	ARHGEF3	rs1354034-C	0.61	9E-34		0.19	[NR] unit decrease	Illumina [476395]	N
1018	chr3	56849748	56849749	rs1354034	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	3p14.3	ARHGEF3	rs1354034-T	NR	1E-19		10.4352	[8.18-12.69] unit decrease	Illumina [544917]	N
1018	chr3	56849748	56849749	rs1354034	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	3p14.3	ARHGEF3	rs1354034-T	0.4092	4E-9	(EA)	9.443	[6.3-12.59] unit decrease	Illumina [544917]	N
1018	chr3	56849748	56849749	rs1354034	23263863	Li J	2012-12-20	Hum Mol Genet	GWAS of blood cell traits identifies novel associated loci and epistatic interactions in Caucasian and African-American children.	Platelet count	7,943 African American children, 6,234 European ancestry children	NA	3p14.3	ARHGEF3	rs1354034-C	0.27	9E-13	(AA)	11.44	[8.31-14.57] unit increase	Illumina [544917]	N
1018	chr3	56849748	56849749	rs1354034	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	3p14.3	ARHGEF3	rs1354034-C	NR	3E-54		6.848	[5.98-7.71] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1018	chr3	56849748	56849749	rs1354034	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	3p14.3	ARHGEF3	rs1354034-T	NR	3E-69		0.023	[0.021-0.025] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1018	chr3	56856538	56856539	rs115602049	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs115602049-T	0.972	3E-29				Affymetrix [10369434] (imputed)	N
1018	chr3	56856747	56856748	rs2173795	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs2173795-G	0.971	1E-20				Affymetrix [10369434] (imputed)	N
1018	chr3	56858889	56858890	rs13062635	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p14.3	NR	rs13062635-G	0.5503	2E-551		0.092115	[0.089-0.096] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1018	chr3	56860711	56860712	rs77052938	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs77052938-T	0.956	1E-18				Affymetrix [10369434] (imputed)	N
1018	chr3	56861221	56861222	rs9861033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs9861033-G	0.514764	2E-583				Affymetrix, Illumina [24588908] (imputed)	N
1018	chr3	56861221	56861222	rs9861033	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3p14.3	NR	rs9861033-A	0.436181	4E-1674		0.168708	[0.16-0.17] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1018	chr3	56862005	56862006	rs7640115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs7640115-T	0.119357	8E-364				Affymetrix, Illumina [17210439] (imputed)	N
1018	chr3	56865444	56865445	rs11925835	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Forns index in high alcohol intake	33,437 British ancestry individuals	NA	3p14.3		rs11925835-?	0.4238	6E-22		0.00462	unit increase	NR [6200000] (imputed)	N
1018	chr3	56865444	56865445	rs11925835	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	3p14.3		rs11925835-?	0.4238	4E-26		0.01191	unit increase	NR [6200000] (imputed)	N
1018	chr3	56865444	56865445	rs11925835	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	3p14.3		rs11925835-?	0.4238	1E-14		0.01074	unit increase	NR [6200000] (imputed)	N
1018	chr3	56865775	56865776	rs12485738	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3p14.3	NR	rs12485738-G	0.629	3E-13		0.001704	[0.0012-0.0022] unit decrease	Affymetrix [NR] (imputed)	N
1018	chr3	56865775	56865776	rs12485738	19820697	Soranzo N	2009-10-11	Nat Genet	A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.	Mean platelet volume	4,627 European ancestry individuals	9,316 European ancestry individuals	3p14.3	ARHGEF3	rs12485738-A	NR	6E-31		0.02	[0.013-0.017] fl increase	Affymetrix, Illumina [~ 2110000] (imputed)	N
1018	chr3	56865775	56865776	rs12485738	19110211	Meisinger C	2008-12-24	Am J Hum Genet	A genome-wide association study identifies three loci associated with mean platelet volume.	Mean platelet volume	1,606 European ancestry individuals	8,617 European ancestry individuals	3p14.3	ARHGEF3	rs12485738-A	0.30	4E-27		0.02	[0.01-0.02] per log fl increase	Affymetrix [335152]	N
1018	chr3	56867340	56867341	rs75563337	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs75563337-T	0.987	2E-15				Affymetrix [10369434] (imputed)	N
1018	chr3	56871065	56871066	rs9311623	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3	ARHGEF3	rs9311623-T	0.765813	4E-12		0.022107378	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1018	chr3	56872765	56872766	rs74909386	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs74909386-G	0.986	1E-9				Affymetrix [10369434] (imputed)	N
1018	chr3	56876595	56876596	rs1500708	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3p14.3	ARHGEF3	rs1500708-T	NR	2E-6		0.0401	unit decrease	Illumina [15409056] (imputed)	N
1018	chr3	56879101	56879102	rs77502174	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p14.3		rs77502174-G	0.973	1E-10				Affymetrix [10369434] (imputed)	N
1018	chr3	56879101	56879102	rs77502174	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs77502174-G	0.973	3E-30				Affymetrix [10369434] (imputed)	N
1018	chr3	56882654	56882655	rs78463215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p14.3		rs78463215-G	0.923	3E-11				Affymetrix [10369434] (imputed)	N
1018	chr3	56882654	56882655	rs78463215	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs78463215-G	0.923	2E-27				Affymetrix [10369434] (imputed)	N
1019	chr3	56894584	56894585	rs77535308	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs77535308-C	0.967	3E-19				Affymetrix [10369434] (imputed)	N
1019	chr3	56902937	56902938	rs11714628	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3p14.3		rs11714628-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1019	chr3	56914064	56914065	rs1500710	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	3p14.3	ARHGEF3	rs1500710-?	NR	6E-6			[0.8841-0.9526]	NR [2487152]	N
1019	chr3	56920373	56920374	rs7620766	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p14.3	ARHGEF3	rs7620766-?	NR	8E-6		0.128	[0.057-0.199] unit increase	Illumina [at least 13000000] (imputed)	N
1019	chr3	56935380	56935381	rs10866004	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p14.3		rs10866004-C	0.605	1E-37				Affymetrix [10369434] (imputed)	N
1019	chr3	56935380	56935381	rs10866004	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs10866004-C	0.605	4E-85				Affymetrix [10369434] (imputed)	N
1019	chr3	56938398	56938399	rs2317440	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.3	NR	rs2317440-?	NR	8E-20				Affymetrix [NR]	N
1019	chr3	56941974	56941975	rs62251088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p14.3	ARHGEF3	rs62251088-T	0.365425	5E-17		0.019677233	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr3	56950054	56950055	rs17825630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p14.3	ARHGEF3	rs17825630-A	0.144155	4E-13		0.024139326	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr3	56950054	56950055	rs17825630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p14.3	ARHGEF3	rs17825630-A	0.144167	9E-29		0.037087984	[0.031-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1019	chr3	56950054	56950055	rs17825630	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3	ARHGEF3	rs17825630-A	0.144166	2E-35		0.041140385	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1019	chr3	56950054	56950055	rs17825630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p14.3	ARHGEF3	rs17825630-A	0.1467	1E-19		0.04997497	[0.039-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1019	chr3	56950054	56950055	rs17825630	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3p14.3	ARHGEF3	rs17825630-A	0.1467	1E-29		0.06169363	[0.051-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1019	chr3	56953173	56953174	rs9844930	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls		ARHGEF3	rs9844930-A	NR	8E-7		1.0587612	NR	Affymetrix, Illumina [8278136] (imputed)	N
1019	chr3	56966245	56966246	rs2062583	21452313	Freudenberg J	2011-04-01	Arthritis Rheum	Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.	Rheumatoid arthritis	801 Korean ancestry cases, 757 Korean ancestry controls	718 Korean ancestry cases, 719 Korean ancestry controls	3p14.3	ARHGEF3	rs2062583-?		2E-6		1.59	[1.30-1.92]	Illumina [441398]	N
1019	chr3	56999967	56999968	rs114939697	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs114939697-G	0.872	3E-19				Affymetrix [10369434] (imputed)	N
1020	chr3	57024742	57024743	rs73088024	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p14.3	NR	rs73088024-?	NR	6E-6		4.529	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1020	chr3	57034732	57034733	rs56148802	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs56148802-G	0.916	8E-16				Affymetrix [10369434] (imputed)	N
1020	chr3	57122779	57122780	rs59527464	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p14.3	IL17RD	rs59527464-C	0.8228125	9E-37	(IL17RD, 3376_49_2)	0.40437016	[0.34-0.47] unit decrease	Illumina [> 1000000] (imputed)	N
1020	chr3	57125100	57125101	rs2035656	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RD	5,328 Icelandic ancestry individuals	NA	3p14.3		rs2035656-C	0.1431	4E-74		0.408474	[0.36-0.45] unit increase	Illumina [7506463] (imputed)	N
1020	chr3	57131032	57131033	rs200974175	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p14.3	NR	rs200974175-C	0.18	2E-54	(Interleukin-17 receptor D, IL17RD.3376.49.2)	0.52	[0.46-0.58] unit increase	Affymetrix [10572788] (imputed)	N
1020	chr3	57132199	57132200	rs2291462	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL17RD	5,328 Icelandic ancestry individuals	NA	3p14.3		rs2291462-A	0.1266	3E-6		0.11168	[0.065-0.159] unit increase	Illumina [7506463] (imputed)	N
1020	chr3	57136584	57136585	rs17057718	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	3p14.3	NR	rs17057718-?	NR	1E-11	(Interleukin-17 receptor D)			Illumina [514227]	N
1020	chr3	57137460	57137461	rs1463657	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3p14.3	IL17RD	rs1463657-C	0.3338353	1E-42	(Interleukin-17 receptor D)	0.6169	[0.53-0.7] unit increase	Affymetrix [509946]	N
1020	chr3	57142658	57142659	rs6776722	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p14.3	IL17RD	rs6776722-A	0.695	3E-74	(Interleukin-17 receptor D, IL17RD.3376.49.2)	0.46	[0.4-0.52] unit decrease	Affymetrix [10572788] (imputed)	N
1020	chr3	57147128	57147129	rs6445857	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p14.3	IL17RD	rs6445857-?	NR	8E-10		0.017489595	[0.012-0.023] unit increase	Illumina [27896057] (imputed)	N
1021	chr3	57163764	57163765	rs6772089	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.3	NR	rs6772089-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1021	chr3	57164407	57164408	rs6787775	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p14.3		rs6787775-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1021	chr3	57186579	57186580	rs17235841	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.3		rs17235841-C	0.23	2E-15		7.92	z score increase	Affymetrix [9061022] (imputed)	N
1021	chr3	57186579	57186580	rs17235841	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.3	NR	rs17235841-C	0.2121	2E-16				NR [9056863] (imputed)	N
1021	chr3	57220157	57220158	rs34504438	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3p14.3	NR	rs34504438-C	NR	1E-9		0.0185	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1021	chr3	57226149	57226150	rs184384746	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	3p14.3	HESX1	rs184384746-T	NR	1E-8		5.695	NR z-score increase	Affymetrix [10847151] (imputed)	N
1021	chr3	57226149	57226150	rs184384746	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	3p14.3	HESX1	rs184384746-T	0.002	1E-8		5.69	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
1022	chr3	57341608	57341609	rs550944	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p14.3	DNAH12	rs550944-A	0.6772	3E-9		0.012	[0.0081-0.0159] unit decrease	Affymetrix [18391927] (imputed)	N
1022	chr3	57395018	57395019	rs114144395	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	3p14.3	DNAH12	rs114144395-?	NR	1E-6		0.483	[0.29-0.68] unit decrease	Illumina [6319684] (imputed)	N
1022	chr3	57397737	57397738	rs9853113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p14.3	DNAH12	rs9853113-A	0.461869	3E-11		0.014752974	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1023	chr3	57494432	57494433	rs79294353	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p14.3	DNAH12	rs79294353-A	0.92	5E-9		29.56	[19.66-39.46] ml decrease	Affymetrix, Illumina [10900000] (imputed)	N
1023	chr3	57494432	57494433	rs79294353	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p14.3	DNAH12	rs79294353-A	0.91	8E-7	(EA)	28.45	[17.14-39.76] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1023	chr3	57509365	57509366	rs146095437	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs146095437-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1023	chr3	57525161	57525162	rs7619066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p14.3		rs7619066-T	NR	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1024	chr3	57545992	57545993	rs7618684	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p14.3	NR	rs7618684-?	NR	6E-7		0.0087343	[0.0053-0.0122] unit decrease	Affymetrix [805426] (imputed)	N
1024	chr3	57557123	57557124	rs6908	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDELC2	5,354 Icelandic ancestry individuals	NA	3p14.3		rs6908-G	0.1795	8E-14		0.181721	[0.13-0.23] unit increase	Illumina [7506463] (imputed)	N
1024	chr3	57619467	57619468	rs151014938	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p14.3	NR	rs151014938-?	NR	2E-8	(left hippocampus)			NR [9227495] (imputed)	N
1024	chr3	57623321	57623322	rs6790873	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs6790873-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1025	chr3	57690134	57690135	rs113146055	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p14.3	NR	rs113146055-?	NR	2E-8				Illumina [7760689] (imputed)	N
1025	chr3	57703709	57703710	rs6795439	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p14.3	NR	rs6795439-?	NR	4E-6		0.0079976	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1025	chr3	57708021	57708022	rs9873544	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	LOC101929159	rs9873544-T	0.376471	9E-15		0.0147585	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
1025	chr3	57708021	57708022	rs9873544	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.3		rs9873544-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1025	chr3	57741345	57741346	rs6445927	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p14.3		rs6445927-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1025	chr3	57743245	57743246	rs1053711	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.3	SLMAP	rs1053711-G		2E-9		0.153	unit increase	Affymetrix [at least 2696785] (imputed)	N
1025	chr3	57745037	57745038	rs4269057	33766948	Zhu Z	2021-03-25	Eur Respir J	A large-scale genome-wide association analysis of lung function in the Chinese population identifies novel loci and highlights shared genetic etiology with obesity.	Lung function (FEV1)	100,285 Chinese ancestry individuals	NA	3p14.3		rs4269057-C	0.53	4E-8		0.024	L decrease	Affymetrix [NR] (imputed)	N
1025	chr3	57746473	57746474	rs28495214	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p14.3		rs28495214-C	NR	2E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1025	chr3	57746514	57746515	rs62259026	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3p14.3	SLMAP	rs62259026-C	0.75	2E-8		1.07	[1.04-1.09]	Affymetrix, Illumina [6224355] (imputed)	N
1025	chr3	57746514	57746515	rs62259026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p14.3		rs62259026-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1025	chr3	57746514	57746515	rs62259026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.3		rs62259026-?	NR	9E-27				NR [~ 8900000] (imputed)	N
1025	chr3	57779835	57779836	rs6768930	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p14.3	SLMAP	rs6768930-G	0.396	5E-6	(Gestational age )	0.05	[NR] wk increase	Illumina [899892]	N
1026	chr3	57815941	57815942	rs115317194	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3p14.3	SLMAP	rs115317194-T	0.067	2E-6	(liability model)	0.15	[0.091-0.209] unit decrease	NR [19725427] (imputed)	N
1026	chr3	57839795	57839795	rs10656429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p14.3		rs10656429-TTA	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1026	chr3	57839795	57839795	rs10656429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3p14.3		rs10656429-TTA	NR	2E-13		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1026	chr3	57869098	57869099	rs114191463	33407712	Liang X	2021-01-06	Mol Brain	Evaluating the genetic effects of sex hormone traits on the development of mental traits: a polygenic score analysis and gene-environment-wide interaction study in UK Biobank cohort.	Testosterone levels x alcohol consumption (drinks per week) interaction	388,571 British ancestry individuals	NA	3p14.3	NR	rs114191463-?	NR	7E-8				Affymetrix [NR] (imputed)	N
1026	chr3	57869962	57869963	rs7644486	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3p14.3	NR	rs7644486-C	0.2766	5E-8		1.19	[1.13-1.26]	Illumina [6576307] (imputed)	N
1026	chr3	57869962	57869963	rs7644486	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3p14.3	NR	rs7644486-C	0.26807572923272033	2E-7	(EA)	1.2	[1.13-1.27]	Illumina [6576307] (imputed)	N
1026	chr3	57869989	57869990	rs7652294	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1)	19,493 European ancestry individuals with low FEV1 measurements, 9,808 European ancestry individuals with high FEV1 measurements	NA	3p14.3	SLMAP	rs7652294-T	NR	3E-8		0.124	[0.081-0.167] unit decrease	Affymetrix [28509962] (imputed)	N
1026	chr3	57877304	57877304	rs36079233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p14.3	SLMAP	rs36079233-CT	0.312379	1E-11		0.016379116	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1026	chr3	57879610	57879611	rs6445932	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3p14.3	SLMAP	rs6445932-T	0.7519	3E-10		0.0184	[0.013-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1026	chr3	57879610	57879611	rs6445932	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.3	SLMAP	rs6445932-T	0.7519	1E-11		0.0184	[0.013-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1026	chr3	57879610	57879611	rs6445932	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.3	SLMAP	rs6445932-T	0.7519	2E-19		0.0248	[0.019-0.03] unit decrease	Affymetrix [19819130] (imputed)	N
1026	chr3	57879610	57879611	rs6445932	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.3	SLMAP	rs6445932-T	0.7519	4E-26		0.0287	[0.023-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1027	chr3	57934625	57934626	rs268775	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 58)	19,670 European ancestry individuals	NA	3p14.3		rs268775-?	NR	3E-8				NR [9705931] (imputed)	N
1027	chr3	57934651	57934652	rs268774	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.3		rs268774-T	0.47	4E-24		10.12	z score increase	Affymetrix [9061022] (imputed)	N
1027	chr3	57934651	57934652	rs268774	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.3		rs268774-T	0.47	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1027	chr3	57934651	57934652	rs268774	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.3	NR	rs268774-T	0.4423	4E-11				NR [9056863] (imputed)	N
1027	chr3	57937991	57937992	rs268771	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.3		rs268771-T	0.46	3E-8		5.54	z score increase	Affymetrix [9061022] (imputed)	N
1027	chr3	57937991	57937992	rs268771	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p14.3	SLMAP	rs268771-C	0.5043	3E-8		0.1344	[0.087-0.182] mmHg increase	Affymetrix [NR] (imputed)	N
1027	chr3	57945242	57945243	rs1675382	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p14.3	FLNB	rs1675382-A	0.5186	5E-8		0.1325	[0.085-0.18] mmHg increase	Affymetrix [NR] (imputed)	N
1027	chr3	57953781	57953782	rs9831340	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.3	NR	rs9831340-C	0.4503	2E-8				NR [9056863] (imputed)	N
1027	chr3	57954434	57954435	rs11710567	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p14.3	intergenic	rs11710567-T	0.3026	3E-9		0.02345895	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1027	chr3	57971522	57971523	rs1866164	32152699	Nudel R	2020-03-09	Hum Genet	A large population-based investigation into the genetics of susceptibility to gastrointestinal infections and the link between gastrointestinal infections and mental illness.	Gastrointestinal infection	7,197 Danish ancestry cases, 37,062 Danish ancestry controls	NA	3p14.3	NR	rs1866164-T	NR	2E-6		1.3466	[1.22-1.47]	Illumina [11600722] (imputed)	N
1027	chr3	57974579	57974580	rs839255	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs839255-?	NR	3E-31				NR [~ 8900000] (imputed)	N
1027	chr3	57993334	57993335	rs11709228	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	3p14.3	NR	rs11709228-G		7E-6		0.3027	[0.17-0.44] SD units decrease	NR [10700000] (imputed)	N
1027	chr3	57994397	57994398	rs142568031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3p14.3	FLNB	rs142568031-?	NR	5E-11		0.254	[0.18-0.33] unit decrease	Illumina [34656550] (imputed)	N
1027	chr3	57994397	57994398	rs142568031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3p14.3	FLNB	rs142568031-?	NR	1E-6	(Hispanic/Latino)	0.3840673	[0.23-0.54] unit decrease	Illumina [34656550] (imputed)	N
1027	chr3	57994397	57994398	rs142568031	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3p14.3	FLNB	rs142568031-?	NR	1E-6	(AA)	0.218223	[0.13-0.31] unit decrease	Illumina [34656550] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3p14.3	FLNB	rs6764184-G	0.76	2E-11		0.0067	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3p14.3	FLNB	rs6764184-G	0.76	2E-7		0.0053	NR unit decrease	Affymetrix [at least 8002429] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	3p14.3	FLNB	rs6764184-T	NR	5E-6	(EA)	0.007	[0.0031-0.0109] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	3p14.3	FLNB	rs6764184-T	NR	2E-8		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	3p14.3	FLNB	rs6764184-T	0.46	7E-6	(Aisan)	0.021	[0.011-0.031] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1027	chr3	58006265	58006266	rs6764184	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	NA	3p14.3	FLNB	rs6764184-T	0.24	1E-8		0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1027	chr3	58014818	58014820	rs34764015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p14.3	FLNB	rs34764015-A	0.307758	1E-29		0.027535979	[0.023-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58014818	58014820	rs34764015	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p14.3	FLNB	rs34764015-A	0.30777	2E-27		0.026414905	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58027196	58027197	rs1623879	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	3p14.3	FLNB	rs1623879-G	0.321	4E-6	(Recessive model)	1.669	[1.297-2.148]	Illumina [733202]	N
1027	chr3	58029015	58029016	rs11130612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p14.3	NR	rs11130612-T	0.334436	5E-10		0.012373	[0.0085-0.0163] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1027	chr3	58031200	58031201	rs200396883	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3p14.3	FLNB	rs200396883-?	0.83	4E-8	(AA)	0.056	[0.036-0.076] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1027	chr3	58031200	58031201	rs200396883	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	3p14.3	FLNB	rs200396883-?	0.831	4E-6	(AA)	0.059	[0.034-0.084] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1027	chr3	58032182	58032182	rs34935660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p14.3	FLNB	rs34935660-GT	0.341015	2E-21		0.022901604	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58032182	58032182	rs34935660	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p14.3	FLNB	rs34935660-GT	0.341026	5E-19		0.021459145	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58033700	58033701	rs6779340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs6779340-G	0.265086	6E-17				Affymetrix, Illumina [24649327] (imputed)	N
1027	chr3	58033700	58033701	rs6779340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p14.3	NR	rs6779340-G	0.336941	5E-19		0.017511	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1027	chr3	58033700	58033701	rs6779340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs6779340-G	0.290385	1E-11				Affymetrix, Illumina [23114412] (imputed)	N
1027	chr3	58033700	58033701	rs6779340	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p14.3	NR	rs6779340-G	0.336877	9E-14		0.015247	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1027	chr3	58033833	58033834	rs11707429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.3		rs11707429-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1027	chr3	58035496	58035497	rs12494328	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (low intraocular pressure)	1,886 European ancestry cases, 15,151 European ancestry controls, 1,315 East Asian ancestry cases, 32,649 East Asian ancestry controls, 46 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	3p14.3	FLNB	rs12494328-A	NR	2E-8		1.18566	[1.13-1.24]	Illumina [NR] (imputed)	N
1027	chr3	58035496	58035497	rs12494328	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	3p14.3	FLNB	rs12494328-A	0.223	1E-8		0.015	[0.0091-0.0209] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1027	chr3	58035496	58035497	rs12494328	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	3p14.3	FLNB	rs12494328-A	NR	6E-11		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1027	chr3	58035496	58035497	rs12494328	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	3p14.3	FLNB	rs12494328-A	NR	5E-6	(EA)	0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1027	chr3	58036810	58036811	rs858215	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p14.3		rs858215-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1027	chr3	58036934	58036935	rs732527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3p14.3	FLNB	rs732527-C	0.3585	1E-16		0.03087325	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1027	chr3	58036934	58036935	rs732527	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	3p14.3	FLNB	rs732527-C	0.3585	9E-19		0.0333776	[0.026-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1027	chr3	58036961	58036962	rs732526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p14.3	FLNB	rs732526-T	0.358557	6E-10		0.014304192	[0.0098-0.0188] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58036961	58036962	rs732526	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p14.3	FLNB	rs732526-T	0.358563	8E-26		0.024652362	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58036961	58036962	rs732526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3p14.3	FLNB	rs732526-T	0.3584	2E-13		0.02786042	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1027	chr3	58036961	58036962	rs732526	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p14.3	FLNB	rs732526-T	0.3584	5E-12		0.02611795	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1027	chr3	58037410	58037411	rs56388610	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p14.3		rs56388610-T	NR	2E-8		0.0141	[0.0092-0.019] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1027	chr3	58038604	58038605	rs839228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p14.3	FLNB	rs839228-T	0.369608	1E-19		0.020847887	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58038604	58038605	rs839228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p14.3	FLNB	rs839228-T	0.369569	1E-14		0.017870612	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1027	chr3	58049638	58049639	rs13096731	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3p14.3	FLNB	rs13096731-A	NR	3E-8	(EscherichiaShigella)	0.43	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1028	chr3	58091860	58091861	rs2686630	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3p14.3		rs2686630-G	0.637585	4E-13		0.0498461	[0.036-0.064] increase	Affymetrix [NR]	N
1028	chr3	58091860	58091861	rs2686630	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3p14.3		rs2686630-G	0.637504	1E-13		0.0540392	[0.039-0.069] increase	Affymetrix [NR]	N
1028	chr3	58092207	58092208	rs2686631	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p14.3	NR	rs2686631-T	0.391068	7E-11		0.013251	[0.0093-0.0172] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1028	chr3	58095465	58095466	rs2708318	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.3	FLNB	rs2708318-T	NR	3E-10		0.0189996	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1028	chr3	58095499	58095500	rs2686635	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.3	FLNB	rs2686635-T	NR	2E-9		0.0180751	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1028	chr3	58105775	58105776	rs13077017	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	3p14.3	DNASE1L3, FLNB	rs13077017-C	0.71	1E-6		0.073	[0.044-0.102] unit decrease	Illumina [6150213] (imputed)	N
1028	chr3	58154326	58154327	rs8640	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs8640-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1028	chr3	58161945	58161946	rs34327759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs34327759-C	NR	3E-12		0.0383	[0.028-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1028	chr3	58164535	58164536	rs7632986	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.3	NR	rs7632986-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1028	chr3	58173155	58173156	rs12715526	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs12715526-T	NR	2E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LST1	5,341 Icelandic ancestry individuals	NA	3p14.3		rs35677470-A	0.07417	8E-17		0.276796	[0.21-0.34] unit decrease	Illumina [7506463] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HIST2H2BE	5,362 Icelandic ancestry individuals	NA	3p14.3		rs35677470-A	0.07417	1E-29		0.394388	[0.33-0.46] unit decrease	Illumina [7506463] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H2AFZ	5,362 Icelandic ancestry individuals	NA	3p14.3		rs35677470-A	0.07417	5E-17		0.29691	[0.23-0.37] unit decrease	Illumina [7506463] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3p14.3	DNASE1L3	rs35677470-A	0.078	9E-9		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	3p14.3	DNASE1L3	rs35677470-A	NR	5E-9		1.22	[1.14-1.30]	Illumina [6450125] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Systemic sclerosis	3,477 European ancestry cases, 22,308 European ancestry controls	NA	3p14.3	DNASE1L3	rs35677470-A	0.08	1E-12		1.6029233		Illumina [252970]	N
1028	chr3	58183635	58183636	rs35677470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	3p14.3	DNASE1L3	rs35677470-A	0.074	2E-8		1.1960124		Illumina [252970]	N
1028	chr3	58183635	58183636	rs35677470	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	3p14.3	DNASE1L3	rs35677470-A	NA	1E-11				Illumina [252970]	N
1028	chr3	58183635	58183636	rs35677470	28314753	Terao C	2017-03-17	Ann Rheum Dis	Transethnic meta-analysis identifies GSDMA and PRDM1 as susceptibility genes to systemic sclerosis.	Systemic sclerosis	700 Japanese ancestry cases, 1,797 Japanese ancestry controls, 564 European ancestry cases, 1,776 European ancestry controls	564 Japanese ancestry cases, 1,863 Japanese ancestry controls, 2,592 European ancestry cases, 9,315 European ancestry controls	3p14.3	DNASE1L3	rs35677470-A		9E-7	(EA)	0.654	[0.4-0.91] unit increase	Illumina [3610917] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3p14.3	DNASE1L3	rs35677470-A	0.05949	4E-31	(ACA positive)	2.0283		Illumina [126270]	N
1028	chr3	58183635	58183636	rs35677470	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3p14.3	DNASE1L3	rs35677470-A	0.05949	3E-16		1.4677		Illumina [126270]	N
1028	chr3	58183635	58183636	rs35677470	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Limited cutaneous systemic scleroderma	1,127 European ancestry cases, 3,466 European ancestry controls	2,507 European ancestry cases, 5,935 European ancestry controls	3p14.3	DNASE1L3	rs35677470-A	0.05949	1E-20		1.6241		Illumina [126270]	N
1028	chr3	58183635	58183636	rs35677470	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	3p14.3	DNASE1L3, PXK	rs35677470-A	0.08	1E-6		1.2095		Illumina [129464] (imputed)	N
1028	chr3	58183635	58183636	rs35677470	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	3p14.3	DNASE1L3, PXK	rs35677470-A	0.08	2E-7		1.1946		Illumina [129464] (imputed)	N
1028	chr3	58195799	58195800	rs755825250	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p14.3	DNASE1L3	rs755825250-A	0.9987	5E-6		0.7949	[0.45-1.14] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1029	chr3	58196842	58196843	rs6807301	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p14.3		rs6807301-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1029	chr3	58196961	58196962	rs4681821	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.3	NR	rs4681821-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1029	chr3	58232658	58232659	rs6445961	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	3p14.3	NR	rs6445961-A	0.274879	1E-7		1.077	[1.05-1.11]	Affymetrix [7791636] (imputed)	N
1029	chr3	58263846	58263847	rs7431936	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p14.3	ABHD6, RPP14, PXK, PDHB, KCTD6	rs7431936-?		5E-14				Affymetrix, Illumina [NR] (imputed)	N
1029	chr3	58263893	58263894	rs7431952	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p14.3	ABHD6, PXK, RPP14	rs7431952-A		1E-12		0.017	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1029	chr3	58268792	58268793	rs1554123	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	12,721 European ancestry individuals	NA	3p14.3		rs1554123-G	0.449239255954721	1E-6		0.0211098	[0.013-0.03] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1029	chr3	58268792	58268793	rs1554123	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	3p14.3		rs1554123-G	0.449239255954721	5E-6	(EA)	0.0223934	[0.013-0.032] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1029	chr3	58280689	58280690	rs9857570	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p14.3		rs9857570-G	NR	1E-8		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1029	chr3	58282575	58282576	rs6445967	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p14.3	ABHD6	rs6445967-C	0.3232	5E-15		0.03046284	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1029	chr3	58283495	58283496	rs59760856	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.3		rs59760856-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1029	chr3	58301186	58301187	rs116035134	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p14.3	RPP14, RP11-80H18.3	rs116035134-A	0.0128	9E-6		0.157	[0.088-0.226] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1029	chr3	58301335	58301336	rs6445969	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3p14.3		rs6445969-?	NR	1E-8		0.012587	[0.0082-0.0169] unit increase	NR [6912294] (imputed)	N
1029	chr3	58301459	58301460	rs9985315	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p14.3	RPP14	rs9985315-A	0.9179	9E-9		0.0272	[0.018-0.036] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1029	chr3	58302934	58302935	rs73081554	33731350	Nandakumar P	2021-03-17	Sci Adv	Nuclear genome-wide associations with mitochondrial heteroplasmy.	Mitochondrial heteroplasmy measurement	982,072 European ancestry individuals	NA	3p14.3	RPP14	rs73081554-T	0.068	3E-14		0.014	[0.010-0.018] unit decrease	NR [57525634] (imputed)	N
1029	chr3	58302934	58302935	rs73081554	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3p14.3	DNASE1L3, ABHD6, PXK	rs73081554-T	0.07	5E-8	(EA)	0.16616	[0.11-0.23] unit increase	Illumina [8380626] (imputed)	N
1029	chr3	58302934	58302935	rs73081554	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	3p14.3	RPP14	rs73081554-A	0.07	1E-8		1.21	[1.13-1.29]	Illumina [133816] (imputed)	N
1029	chr3	58302934	58302935	rs73081554	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3p14.3	ABHD6, PXK, DNASE1L3	rs73081554-T	0.07	5E-8	(EA)	1.18	[1.11-1.25]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1029	chr3	58308959	58308960	rs1055973	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3p14.3	RPP14	rs1055973-C	0.32247	5E-9		0.014148349	[0.0094-0.0189] unit increase	Affymetrix [93095623] (imputed)	N
1029	chr3	58312296	58312297	rs7622074	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p14.3		rs7622074-A	0.678	7E-24				Affymetrix [10369434] (imputed)	N
1029	chr3	58312296	58312297	rs7622074	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p14.3	RP11-80H18.4	rs7622074-G	0.322374	5E-29		0.026794624	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1029	chr3	58315074	58315075	rs6786088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p14.3	PXK, RP11-80H18.4	rs6786088-C	0.32283	1E-21		0.02304594	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1029	chr3	58318463	58318464	rs180977001	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	3p14.3	PXK	rs180977001-?	NR	2E-8		1.27	[1.17-1.39]	Illumina [at least 5000000] (imputed)	N
1030	chr3	58331185	58331186	rs2176082	23740937	Martin JE	2013-06-10	Hum Mol Genet	A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.	Systemic lupus erythematosus and Systemic sclerosis	up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls	up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls	3p14.3	PXK	rs2176082-?		5E-11	(ACA)	1.21	[NR]	Illumina [NR]	N
1030	chr3	58334537	58334538	rs146317210	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3p14.3	PXK	rs146317210-G	0.992127	4E-10		0.060833	[0.042-0.08] unit decrease	NR [13737936] (imputed)	N
1030	chr3	58334537	58334538	rs146317210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.3		rs146317210-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1030	chr3	58358957	58358958	rs6764532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p14.3		rs6764532-G	NR	2E-14		0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1030	chr3	58358966	58358967	rs6775517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p14.3		rs6775517-T	NR	1E-17		0.0173	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1030	chr3	58360326	58360327	rs57700771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p14.3		rs57700771-?	NR	9E-21				NR [~ 8900000] (imputed)	N
1030	chr3	58366016	58366017	rs116165318	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p14.3	PXK	rs116165318-?	NR	2E-6	(Hispanic)	1.5625	[1.3-1.89]	Illumina [at least 5000000] (imputed)	N
1030	chr3	58370176	58370177	rs6445975	18204446	Harley JB	2008-01-20	Nat Genet	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci.	Systemic lupus erythematosus	720 European ancestry female cases, 2,337 European ancestry female controls	1,846 European ancestry female cases, 1,825 European ancestry female controls	3p14.3	PXK	rs6445975-C	0.28	7E-9		1.25	[1.16-1.35]	Illumina [317501]	N
1030	chr3	58371331	58371332	rs13071861	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.3		rs13071861-G	0.13	4E-10		6.26	z score increase	Affymetrix [9061022] (imputed)	N
1030	chr3	58374028	58374029	rs7610312	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p14.3	PXK	rs7610312-G	0.3704	5E-9		0.02158849	[0.014-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1030	chr3	58375285	58375286	rs4076852	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	3p14.3	FLNB, DNASE1L3, PXK	rs4076852-G	0.26	1E-10		1.16		Illumina [4723365]	N
1030	chr3	58375405	58375406	rs55704295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p14.3		rs55704295-C	NR	2E-29		0.0294	[0.024-0.034] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1030	chr3	58375405	58375406	rs55704295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs55704295-C	0.359722	5E-23				Affymetrix, Illumina [24332387] (imputed)	N
1030	chr3	58375405	58375406	rs55704295	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p14.3	NR	rs55704295-C	0.368234	8E-26		0.02093	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1030	chr3	58380464	58380465	rs11714574	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3p14.3	PXK	rs11714574-A	0.59	4E-40		13.3	z-score increase	Affymetrix [4314223] (imputed)	N
1030	chr3	58380464	58380465	rs11714574	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	3p14.3	NR	rs11714574-T	NR	9E-6	(phenotype 1)	2.38	[NR]	Illumina [> 8000000] (imputed)	N
1030	chr3	58381286	58381287	rs13315871	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs13315871-G	NR	2E-8		0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58381286	58381287	rs13315871	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs13315871-G	0.908	3E-7	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58381286	58381287	rs13315871	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs13315871-G	NR	1E-8		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58381286	58381287	rs13315871	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs13315871-G	0.908	6E-7	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58381286	58381287	rs13315871	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	3p14.3	PXK	rs13315871-A	0.1	4E-8		0.036	[NR] unit decrease	NR [NR] (imputed)	N
1030	chr3	58383173	58383174	rs55692656	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	3p14.3	PXK, KCTD6, PDHB	rs55692656-?	NR	6E-9	(EA)			Affymetrix, Illumina [10537485] (imputed)	N
1030	chr3	58383173	58383174	rs55692656	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	3p14.3	PXK, KCTD6, PDHB	rs55692656-?	NR	3E-8				Affymetrix, Illumina [10537485] (imputed)	N
1030	chr3	58386273	58386274	rs4560319	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p14.3	PXK	rs4560319-T	0.0817	4E-8		0.0266	[0.017-0.036] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1030	chr3	58388735	58388735	rs748959644	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p14.3	NR	rs748959644-C	0.917459	2E-8		0.0086637	[0.0056-0.0117] unit increase	Affymetrix [16582909] (imputed)	N
1030	chr3	58391292	58391293	rs9844432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3p14.3		rs9844432-G	NR	3E-13		0.0313	[0.023-0.04] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1030	chr3	58392009	58392009	rs555554144	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p14.3		rs555554144-AT	NR	7E-16		0.0163	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1030	chr3	58395862	58395863	rs56384862	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p14.3	PXK	rs56384862-G		1E-16		0.019	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1030	chr3	58395862	58395863	rs56384862	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p14.3	NR	rs56384862-A	NR	3E-6		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1030	chr3	58395862	58395863	rs56384862	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3p14.3	PXK	rs56384862-G	0.33819999999999995	8E-12		0.0128	[0.0091-0.0165] unit increase	Illumina [246328]	N
1030	chr3	58395890	58395891	rs4681851	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3p14.3	PXK	rs4681851-?		4E-8	(ACA positive)	1.58		Illumina [126270]	N
1030	chr3	58399886	58399887	rs143985986	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3p14.3	PXK	rs143985986-T	0.3708	2E-10		0.02325868	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1030	chr3	58400413	58400414	rs11705721	29310926	Sharma A	2018-01-05	J Autoimmun	Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort.	Type 1 diabetes autoantibodies in high risk HLA genotype individuals (time to event)	5,806 European ancestry children	NA	3p14.3	PXK, PDHB	rs11705721-G	0.321	9E-6	(multiple-IA)	1.41		Illumina [131847]	N
1030	chr3	58403041	58403042	rs11708895	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p14.3	PXK	rs11708895-C	0.370517	1E-20		0.02122374	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1030	chr3	58405199	58405200	rs28709068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs28709068-G	NR	1E-8		0.044	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58405199	58405200	rs28709068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs28709068-G	0.913	4E-7	(EA)	0.041	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58405199	58405200	rs28709068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs28709068-G	NR	7E-9		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58405199	58405200	rs28709068	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3p14.3	NR	rs28709068-G	0.913	6E-7	(EA)	0.042	unit increase	Affymetrix [at least 7091467] (imputed)	N
1030	chr3	58405636	58405640	rs66520518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p14.3	PXK	rs66520518-T	0.372948	7E-22		0.022031115	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1030	chr3	58405636	58405640	rs66520518	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p14.3	PXK	rs66520518-T	0.372936	2E-24		0.023410032	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1030	chr3	58405946	58405947	rs11130638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs11130638-G	0.36074	2E-23				Affymetrix, Illumina [24653286] (imputed)	N
1030	chr3	58406693	58406694	rs9825431	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3p14.3	PXK	rs9825431-?	NR	4E-18		0.0404	[0.032-0.049] unit decrease	Affymetrix [5701386] (imputed)	N
1030	chr3	58410553	58410554	rs34579268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p14.3	NR	rs34579268-T	0.372458	5E-26		0.020054	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1030	chr3	58410553	58410554	rs34579268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.3	NR	rs34579268-T	0.364865	2E-27				Affymetrix, Illumina [24558453] (imputed)	N
1030	chr3	58410553	58410554	rs34579268	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p14.3	NR	rs34579268-T	0.372602	5E-30		0.021707	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1030	chr3	58420612	58420613	rs71311871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3p14.3		rs71311871-G	NR	2E-13		0.0312	[0.023-0.039] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1030	chr3	58420612	58420613	rs71311871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3p14.3	PDHB	rs71311871-A	0.91695	7E-14		0.0283771	[0.021-0.036] unit increase	Affymetrix [NR] (imputed)	N
1030	chr3	58420612	58420613	rs71311871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3p14.3	PDHB	rs71311871-A	0.916932	3E-12		0.0264323	[0.019-0.034] unit increase	Affymetrix [NR] (imputed)	N
1030	chr3	58423497	58423498	rs6794695	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Fibrosis-4 index in high alcohol intake	33,324 British ancestry individuals	NA	3p14.3		rs6794695-?	0.1736	1E-6		0.007057	unit decrease	NR [6200000] (imputed)	N
1030	chr3	58423497	58423498	rs6794695	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate transaminase levels in high alcohol intake	34,101 British ancestry individuals	NA	3p14.3		rs6794695-?	0.1736	7E-10		0.008256	unit decrease	NR [6200000] (imputed)	N
1030	chr3	58423497	58423498	rs6794695	32561361	Innes H	2020-06-16	Gastroenterology	Genome-wide Association Study for Alcohol-related Cirrhosis Identifies Risk Loci in MARC1 and HNRNPUL1.	Aspartate aminotransferase platelet ratio index in high alcohol intake	33,330 British ancestry individuals	NA	3p14.3		rs6794695-?	0.1736	1E-7		0.009514	unit decrease	NR [6200000] (imputed)	N
1030	chr3	58423497	58423498	rs6794695	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgG levels	15,536 Icelandic ancestry individuals	2,158 Swedish ancestry individuals	3p14.3	PDHB	rs6794695-C	0.182	7E-7		0.07	NR SD units increase	Illumina [21568490] (imputed)	N
1030	chr3	58423497	58423498	rs6794695	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	Composite immunoglobulin trait (IgA x IgG/IgM)	14,183 Icelandic ancestry individuals	2,146 Swedish ancestry individuals	3p14.3	PDHB	rs6794695-C	0.182	3E-8		0.09	NR SD units increase	Illumina [21568490] (imputed)	N
1030	chr3	58436475	58436476	rs55954186	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	3p14.3	PXK, KCTD6, PDHB	rs55954186-A	0.37	9E-9	(EA)	0.0149	[0.0098-0.02] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1030	chr3	58436475	58436476	rs55954186	30586737	Sabater-Lleal M	2018-11-20	Circulation	Genome-Wide Association Trans-Ethnic Meta-Analyses Identifies Novel Associations Regulating Coagulation Factor VIII and von Willebrand Factor Plasma Levels.	vWF levels	42,379 European ancestry individuals, 3,700 African American individuals, 275 Hispanic individuals	NA	3p14.3	PDHB, PXK, KCTD6	rs55954186-A	0.37	5E-9		0.015	[0.0099-0.0201] unit increase	Affymetrix, Illumina [10537485] (imputed)	N
1030	chr3	58440235	58440236	rs7633553	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.3	NR	rs7633553-T	0.2998	5E-8				NR [9056863] (imputed)	N
1030	chr3	58454016	58454019	rs35336081	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3p14.3		rs35336081-A	NR	2E-98		0.0499	[0.045-0.055] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1030	chr3	58455202	58455203	rs188588308	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/transferrin saturation ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	3p14.3	KCTD6	rs188588308-A	0.989	7E-7	(Subset)	0.9656	[0.58-1.35] unit increase	Illumina [up to 38043574] (imputed)	N
1030	chr3	58455996	58455997	rs112208829	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p14.3	NR	rs112208829-?	NR	3E-6	(Latino)	1.0368	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1030	chr3	58456810	58456811	rs11719450	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p14.3	PXK	rs11719450-T		2E-16		0.02	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1030	chr3	58456810	58456811	rs11719450	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3p14.3	intergenic	rs11719450-T	0.3716	2E-9		0.02204239	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1031	chr3	58465182	58465183	rs9852465	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p14.3	PXK, PDHB, KCTD6	rs9852465-?	NR	2E-8		1.1	[1.06-1.15]	Illumina [at least 5000000] (imputed)	N
1031	chr3	58469163	58469164	rs7612773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3p14.3		rs7612773-G	0.231444	6E-11		0.017319659	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1031	chr3	58470350	58470351	rs9311676	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.3	RP11-359I18.5	rs9311676-T	NR	3E-8		0.0173583	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1031	chr3	58470350	58470351	rs9311676	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3p14.3	ABHD6, PXK	rs9311676-?	0.424	5E-6	(EA)	1.14	[NR]	NR [6344733] (imputed)	N
1031	chr3	58470350	58470351	rs9311676	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	3p14.3	ABHD6, PXK, PDHB	rs9311676-C		3E-14		1.17	[1.13-1.22]	Illumina [644674]	N
1031	chr3	58497778	58497779	rs6795193	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs6795193-T	NR	2E-31		0.0297	[0.025-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr3	58503983	58503984	rs77781968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3p14.3	NR	rs77781968-T	NR	1E-9		0.0451	[0.031-0.06] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr3	58503983	58503984	rs77781968	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs77781968-T	NR	5E-19		0.0656	[0.051-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr3	58512236	58512237	rs1127745	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p14.3	ACOX2	rs1127745-?	NR	6E-6	(AA)	1.29	[1.16-1.44]	Illumina [at least 5000000] (imputed)	N
1031	chr3	58512899	58512900	rs13434020	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs13434020-G	NR	2E-15		0.033	[0.025-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr3	58515565	58515566	rs4681690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p14.3	NR	rs4681690-T	NR	3E-10		0.021	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr3	58515565	58515566	rs4681690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p14.3	NR	rs4681690-T	NR	4E-11		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1031	chr3	58515565	58515566	rs4681690	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3p14.3	NR	rs4681690-T	NR	3E-16		0.0262	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1031	chr3	58552328	58552329	rs11539086	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	3p14.3	Intergenic	rs11539086-?		9E-6		1.522	[NR]	Affymetrix [492217] (imputed)	N
1031	chr3	58556840	58556841	rs13315591	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	3p14.3	PXK	rs13315591-C	0.09	5E-8		1.29	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
1031	chr3	58574716	58574717	rs4681693	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p14.3	FAM107A	rs4681693-G	0.5034375	7E-6	(FAM107A, 2760_2_2)	0.11038605	[0.062-0.159] unit decrease	Illumina [> 1000000] (imputed)	N
1032	chr3	58639417	58639418	rs13097314	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p14.2	NR	rs13097314-T	0.009	1E-21	(Protein FAM3D, FAM3D.13102.1.3)	1.23	[0.98-1.48] unit decrease	Affymetrix [10572788] (imputed)	N
1032	chr3	58647574	58647575	rs77510899	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p14.2	FAM3D, FAM107A, C3orf67, ACOX2	rs77510899-T	NR	4E-6	(sleep duration, weekdays)	0.7111	[0.41-1.01] unit decrease	Affymetrix [7141204] (imputed)	N
1032	chr3	58649334	58649335	rs6807381	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p14.2	FAM3D	rs6807381-G	0.92453125	3E-18	(FAM3D, 13102_1_3)	0.39566928	[0.31-0.48] unit increase	Illumina [> 1000000] (imputed)	N
1032	chr3	58650235	58650236	rs56292712	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM3D	5,367 Icelandic ancestry individuals	NA	3p14.2		rs56292712-T	0.07558	3E-28		0.390339	[0.32-0.46] unit decrease	Illumina [7506463] (imputed)	N
1032	chr3	58652291	58652292	rs3749290	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3p14.2	FAM3D	rs3749290-T	0.096	2E-31	(Protein FAM3D, FAM3D.13102.1.3)	0.48	[0.4-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
1032	chr3	58701719	58701720	rs111423440	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p14.2	C3orf67	rs111423440-A	0.0213537250382412	2E-6	(G_Lactococcus_HB)	1.01654	[0.6-1.43] unit increase	Illumina [7711310] (imputed)	N
1033	chr3	58793056	58793057	rs181319480	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p14.2	Intergenic	rs181319480-T	NR	4E-7	(between families)	5.086	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1033	chr3	58849589	58849590	rs35778488	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs35778488-T	0.02265	3E-8	(FXN)	0.004097	NR unit increase	Illumina [1671387] (imputed)	N
1033	chr3	58849589	58849590	rs35778488	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs35778488-T	0.02265	1E-8	(ABHD10)	0.05109	NR unit increase	Illumina [1671387] (imputed)	N
1034	chr3	58892820	58892824	rs35001935	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	3p14.2	C3orf67, RP11-147N17.1	rs35001935-CGTGT		8E-7		0.251	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1034	chr3	58892820	58892824	rs35001935	29077507	Chen H	2017-10-27	Am J Respir Cell Mol Biol	Multi-ethnic Meta-analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea Related Quantitative Trait Locus in Men.	Obstructive sleep apnea trait (apnea hypopnea index)	677 African American women, 544 African American men, 115 Asian women, 113 Asian men, 1,825 European ancestry women, 3,902 European ancestry men,  7,492 Hispanic women, 5,065 Hispanic men	NA	3p14.2	C3orf67, RP11-147N17.1	rs35001935-CGTGT		1E-6	(men)	0.339	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1034	chr3	58982074	58982075	rs11915402	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	3p14.2	C3orf67	rs11915402-G	0.956	8E-13				NR [509413]	N
1035	chr3	58983178	58983179	rs72883322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs72883322-A	0.02091	2E-8	(PCCB)	0.3279	NR unit increase	Illumina [1671387] (imputed)	N
1035	chr3	58983178	58983179	rs72883322	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs72883322-A	0.02091	2E-8	(PCCA)	0.305	NR unit increase	Illumina [1671387] (imputed)	N
1035	chr3	59004270	59004271	rs1491631	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.2	NR	rs1491631-?	NR	7E-6				Affymetrix [NR]	N
1036	chr3	59137523	59137524	rs143438401	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	3p14.2		rs143438401-G	0.971638	2E-6		0.0368528	[0.022-0.052] unit decrease	Illumina [13900000] (imputed)	N
1037	chr3	59262686	59262687	rs11917972	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.2	C3orf67	rs11917972-G	0.927	9E-6	(EA, women)	0.035	[0.02-0.051] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1037	chr3	59280503	59280504	rs73090154	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3p14.2	C3orf67	rs73090154-A	NR	8E-6	(daytime resting duration, weekdays)	0.2732	[0.15-0.39] unit increase	Affymetrix [7141204] (imputed)	N
1037	chr3	59336255	59336256	rs191663403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p14.2	Intergenic	rs191663403-C	0.998	5E-6	(AA)	0.43	NR unit increase	Illumina [NR] (imputed)	N
1037	chr3	59336255	59336256	rs191663403	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.2	Intergenic	rs191663403-C	0.999	3E-7	(AA)	0.425	unit increase	Illumina [NR] (imputed)	N
1037	chr3	59354157	59354158	rs6771019	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	3p14.2	intergenic	rs6771019-?	NR	2E-6				NR [~ 2000000]	N
1037	chr3	59359678	59359679	rs185231391	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	3p14.2	NR	rs185231391-C		1E-6		0.8503	[0.5-1.2] SD units decrease	NR [10700000] (imputed)	N
1037	chr3	59373744	59373745	rs2886671	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	3p14.2	NR	rs2886671-C	0.57	4E-8		1.0309278	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1038	chr3	59410167	59410168	rs182544594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.2	Intergenic	rs182544594-G	0.996	6E-7	(AA)	0.15	unit increase	Illumina [NR] (imputed)	N
1038	chr3	59410167	59410168	rs182544594	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.2	Intergenic	rs182544594-G	0.996	4E-6	(AA)	0.694	NR unit increase	Illumina [NR] (imputed)	N
1038	chr3	59417346	59417347	rs182242981	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.2	Intergenic	rs182242981-T	0.996	5E-7	(AA)	0.149	unit increase	Illumina [NR] (imputed)	N
1038	chr3	59417346	59417347	rs182242981	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.2	Intergenic	rs182242981-T	0.996	4E-6	(AA)	0.687	NR unit increase	Illumina [NR] (imputed)	N
1038	chr3	59418532	59418533	rs9847987	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Neuritic plaque	up to 4,232 individuals	NA	3p14.2	intergenic	rs9847987-T	0.2012	8E-6	(Ordinal)	0.2696	[0.15-0.39] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1038	chr3	59427796	59427797	rs6783485	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3p14.2	C3orf67, LOC339902	rs6783485-?	NR	1E-6		5.0	[2.86-8.33]	Illumina [862198]	N
1038	chr3	59434419	59434420	rs1910236	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p14.2	NR	rs1910236-A	0.469	4E-10		0.00679188	[0.0047-0.0089] unit increase	NR [9732723] (imputed)	N
1038	chr3	59434419	59434420	rs1910236	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p14.2	NR	rs1910236-A	0.469	1E-8		0.014643938	[0.0096-0.0196] unit increase	NR [~ 10000000] (imputed)	N
1039	chr3	59545329	59545330	rs9858271	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Papillary thyroid cancer	410 Korean ancestry cases, 8,279 Korean ancestry controls	587 Korean ancestry cases, 605 Korean ancestry controls	3p14.2	FHIT	rs9858271-G	0.43	3E-8		1.3	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1039	chr3	59545329	59545330	rs9858271	28703219	Son HY	2017-07-13	Nat Commun	Genome-wide association and expression quantitative trait loci studies identify multiple susceptibility loci for thyroid cancer.	Differentiated thyroid cancer	470 Korean ancestry cases, 8,279 Korean ancestry controls	615 Korean ancestry cases, 605 Korean ancestry controls	3p14.2	FHIT	rs9858271-G	0.43	7E-7		1.26	[NR]	Affymetrix, Illumina [3593389] (imputed)	N
1039	chr3	59570053	59570054	rs2198771	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3p14.2	intergenic	rs2198771-G	NR	3E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1039	chr3	59588995	59588996	rs12634709	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Urinary metabolite levels in chronic kidney disease	1,143 European ancestry cases	NA	3p14.2	C3orf67, FHIT	rs12634709-T	NR	4E-8	(Decanoylcarnitine)	0.297105	[0.19-0.4] unit increase	Illumina [up to 9281895] (imputed)	N
1040	chr3	59649520	59649521	rs6763159	24800985	Agopian AJ	2014-05-06	PLoS One	Genome-wide association study of maternal and inherited loci for conotruncal heart defects.	Conotruncal heart defects	537 European ancestry case-parent trios, 213 case-parent trios	348 European ancestry case-parent trios, 10 case-parent trios	3p14.2	FHIT	rs6763159-?		1E-6	(Maternal)	1.47	[1.25-1.72]	Illumina [2421290] (imputed)	N
1040	chr3	59664686	59664687	rs1281465	34075027	Gonda X	2021-06-01	Transl Psychiatry	Genetic underpinnings of affective temperaments: a pilot GWAS investigation identifies a new genome-wide significant SNP for anxious temperament in ADGRB3 gene.	Anxious temperament	775 European ancestry individuals	NA	3p14.2		rs1281465-G	NR	4E-6		0.03152	unit increase	Illumina [2550710] (imputed)	N
1040	chr3	59705893	59705894	rs2366846	29673008	Bonfiglio F	2018-04-19	Neurogastroenterol Motil	A GWAS meta-analysis from 5 population-based cohorts implicates ion channel genes in the pathogenesis of irritable bowel syndrome.	Irritable bowel syndrome	1,335 European ancestry cases, 9,768 European ancestry controls	NA	3p14.2	FHIT	rs2366846-A	0.177	5E-6		1.4	[NR]	Illumina [2483385] (imputed)	N
1040	chr3	59757483	59757484	rs49413	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p14.2	Intergenic	rs49413-?	NR	8E-6		1.405	[NR]	Affymetrix [492217] (imputed)	N
1040	chr3	59757574	59757575	rs49411	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p14.2	NR	rs49411-T	0.487	2E-6	(IFNAR2_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1041	chr3	59777684	59777685	rs2629879	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p14.2	FHIT	rs2629879-A	0.7851	9E-6		0.0373	[0.021-0.054] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1041	chr3	59778270	59778271	rs2629881	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p14.2	FHIT	rs2629881-C	0.22119	4E-10		0.0105954	[0.0073-0.0139] unit decrease	Affymetrix [12370749]	N
1041	chr3	59819759	59819760	rs113935943	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	3p14.2	FHIT	rs113935943-T	0.9261	7E-6		0.1869	[0.11-0.27] unit decrease	NR [NR] (imputed)	N
1041	chr3	59819759	59819760	rs113935943	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	3p14.2	FHIT	rs113935943-T	0.9261	7E-6		0.1869	[0.11-0.27] unit decrease	NR [NR] (imputed)	N
1041	chr3	59861870	59861871	rs633798	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	3p14.2	FHIT	rs633798-?	NR	2E-36		1.147	[1.123-1.172]	Illumina [13729857] (imputed)	N
1042	chr3	59900026	59900027	rs294455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p14.2		rs294455-C	NR	1E-9		0.0122	[0.0083-0.0161] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1042	chr3	59900026	59900027	rs294455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p14.2		rs294455-C	NR	3E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1042	chr3	59902800	59902801	rs1825630	21223598	Wineinger NE	2011-01-11	BMC Med Genomics	Genome-wide joint SNP and CNV analysis of aortic root diameter in African Americans: the HyperGEN study.	Aortic root size	1,086 African American individuals	NA	3p14.2	FHIT	rs1825630-?	0.44	8E-6		0.0946	[0.053-0.136] cm increase	Affymetrix [NR]	N
1042	chr3	59904328	59904329	rs139239158	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	3p14.2	NR	rs139239158-?	0.02	3E-8		3.69	[2.32-5.87]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1042	chr3	59921019	59921020	rs4502542	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	3p14.2	FHIT	rs4502542-T	0.017	2E-6	(EA + AA - GSE)			Affymetrix [421789]	N
1042	chr3	59928850	59928851	rs931317	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3p14.2	FHIT	rs931317-?	0.786	3E-6			[NR]	Affymetrix, Illumina [152234]	N
1042	chr3	59930671	59930672	rs2366964	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	3p14.2	NR	rs2366964-C	NR	5E-9	(Cox proportional hazards regression model)	41.19	[11.81-143.66]	Illumina [810622]	N
1042	chr3	59939372	59939373	rs3772458	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p14.2	NR	rs3772458-T	0.43	2E-9		0.00651948	[0.0044-0.0087] unit decrease	NR [9732723] (imputed)	N
1042	chr3	59948569	59948570	rs11920657	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.2	NR	rs11920657-?	NR	2E-9				Affymetrix [NR]	N
1042	chr3	59966155	59966156	rs7640107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p14.2	NR	rs7640107-T	0.430789	3E-8	(Conditioned on chr3:60459291)	0.014186049	[0.0091-0.0192] unit decrease	NR [~ 10000000] (imputed)	N
1042	chr3	59971867	59971868	rs2630192	34590679	Pott J	2021-09-30	Hum Mol Genet	Meta-GWAS of PCSK9 levels detects two novel loci at APOB and TM6SF2.	PCSK9 levels	10,186 European ancestry statin-free individuals	300 African American statin-free individuals	3p14.2		rs2630192-C	0.932315016218339	5E-7	(EA)	0.0483613	[0.03-0.067] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
1042	chr3	59981524	59981525	rs212016	22419666	Shi M	2012-03-14	Am J Med Genet A	Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.	Orofacial clefts	1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads	NA	3p14.2	FHIT	rs212016-?	0.69	7E-6	(CL)	1.54	[1.89-1.27]	Illumina [NR]	N
1042	chr3	60001824	60001825	rs9311745	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		3p14.2	NR	rs9311745-C	0.0466	5E-6		2.9914	[NR] unit increase	Illumina [1200000] (imputed)	N
1042	chr3	60003908	60003909	rs113436108	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	CTACK levels	3,631 Finnish ancestry individuals	NA	3p14.2	NR	rs113436108-G	NR	3E-6		0.5249	[0.31-0.74] SD units increase	NR [10700000] (imputed)	N
1043	chr3	60062024	60062025	rs13100563	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p14.2	FHIT	rs13100563-?	NR	6E-6		0.0393	[0.022-0.056] unit decrease	Affymetrix, Illumina [2478500] (imputed)	N
1043	chr3	60069860	60069861	rs114160887	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs114160887-C	0.01394	1E-9	(NPC2)	0.07143	NR unit increase	Illumina [1671387] (imputed)	N
1043	chr3	60077039	60077040	rs12636241	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-448 sp003150135 abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.2		rs12636241-C	0.0756888	1E-8		0.169379	[0.11-0.23] unit increase	Illumina [7980478] (imputed)	N
1043	chr3	60090012	60090013	rs6766789	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-448 abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.2		rs6766789-A	0.0830116	9E-9		0.157922	[0.1-0.21] unit increase	Illumina [7980478] (imputed)	N
1043	chr3	60091686	60091687	rs149826402	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs149826402-G	0.01045	3E-11	(NPC2)	0.08881	NR unit increase	Illumina [1671387] (imputed)	N
1043	chr3	60104027	60104028	rs56334439	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	3p14.2	NR	rs56334439-?	NR	5E-7		0.1601	[0.098-0.222] unit increase	Illumina [at least 560000] (imputed)	N
1043	chr3	60123521	60123522	rs10510829	22379998	McCormack M	2012-03-01	Pharmacogenomics	Genome-wide mapping for clinically relevant predictors of lamotrigine- and phenytoin-induced hypersensitivity reactions.	Adverse response to lamotrigine and phenytoin	34 European ancestry lamotrigine-induced hypersensitivity cases, 42 European ancestry phenytoin-induced hypersensitivity cases, 1,296 European ancestry controls	NA	3p14.2	FHIT	rs10510829-?	NR	7E-7	(LTG)			Illumina [NR]	N
1043	chr3	60138225	60138226	rs7616516	32999390	Trajanoska K	2020-09-30	Commun Biol	Genetic basis of falling risk susceptibility in the UK Biobank Study.	Falling risk	89,076 European ancestry cases, 362,103 European ancestry controls	2,215 cases, 6289 controls	3p14.2	FHIT	rs7616516-A	0.07	3E-7		1.04	[1.03-1.06]	Affymetrix [7745390] (imputed)	N
1044	chr3	60165889	60165890	rs12493585	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p14.2	NR	rs12493585-?	NR	2E-8				Illumina [7760689] (imputed)	N
1044	chr3	60187575	60187576	rs558048830	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		FHIT	rs558048830-?	NR	2E-6		0.92	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1044	chr3	60201713	60201714	rs734156	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA3792 abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.2		rs734156-T	0.334211	2E-8		0.0384595	[0.025-0.052] unit decrease	Illumina [7980478] (imputed)	N
1044	chr3	60287844	60287845	rs1353545	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p14.2	FHIT	rs1353545-C	NR	7E-8	(EA)	1.064	[1.04-1.09]	Illumina [6627481] (imputed)	N
1044	chr3	60287844	60287845	rs1353545	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p14.2	FHIT	rs1353545-C	NR	2E-8		1.062	[1.04-1.08]	Illumina [6627481] (imputed)	N
1044	chr3	60287844	60287845	rs1353545	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p14.2	intergenic	rs1353545-C	NR	2E-7		1.057	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1044	chr3	60287844	60287845	rs1353545	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p14.2	FHIT	rs1353545-C		1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1044	chr3	60287844	60287845	rs1353545	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p14.2	NR	rs1353545-C	NR	5E-8		1.06	[NR]	Illumina [7158791] (imputed)	N
1044	chr3	60289841	60289842	rs10510837	21182207	Salyakina D	2010-12-01	Autism Res	Variants in several genomic regions associated with asperger disorder.	Asperger disorder	848 individuals from 232 families	NA	3p14.2	FHIT	rs10510837-?	0.12	4E-6				Illumina [439282] (imputed)	N
1044	chr3	60290349	60290350	rs741898	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p14.2	NA	rs741898-G		5E-9		0.0139204	[0.0093-0.0186] unit increase	Illumina [13288253] (imputed)	N
1045	chr3	60300459	60300460	rs145467611	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3p14.2	NR	rs145467611-A	0.01	7E-6		2.15	[1.82-2.48]	Illumina [8468885] (imputed)	N
1045	chr3	60316416	60316417	rs727476	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative myocardial infarction after cardiac surgery	87 cases, 939 controls	NA	3p14.2	FHIT	rs727476-?	NR	2E-6	(adjusted for atrial fibrillation, delirium, renal failure and stroke)	2.173913	[1.59-3.03]	Illumina [9007469] (imputed)	N
1045	chr3	60321081	60321082	rs13074132	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p14.2	intergenic	rs13074132-T	NR	2E-6		1.052	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1045	chr3	60338137	60338138	rs115227607	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	3p14.2		rs115227607-?	NR	3E-6		4.64	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1045	chr3	60338137	60338138	rs115227607	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	3p14.2		rs115227607-?	NR	4E-6		4.64	Z score increase	Affymetrix, Illumina [NR] (imputed)	N
1045	chr3	60360650	60360651	rs146752463	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		3p14.2	FHIT	rs146752463-A	0.0357372	5E-6		1.24191	[0.72-1.77] unit increase	Illumina [640625] (imputed)	N
1046	chr3	60438682	60438683	rs412104	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p14.2	NR	rs412104-G	0.373	1E-11		0.00755044	[0.0054-0.0097] unit increase	NR [9732723] (imputed)	N
1046	chr3	60459290	60459291	rs2734390	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p14.2	NR	rs2734390-G	0.372	2E-8		0.014770906	[0.0096-0.0199] unit increase	NR [~ 10000000] (imputed)	N
1046	chr3	60467588	60467589	rs144504132	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FHIT	rs144504132-?	NR	2E-8	(female)	1.88442	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1046	chr3	60508339	60508340	rs80171647	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3p14.2	FHIT	rs80171647-?	NR	2E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1047	chr3	60568252	60568253	rs9833533	29095316	Suh Y	2017-11-01	Medicine (Baltimore)	Genome-wide association study for genetic variants related with maximal voluntary ventilation reveals two novel genomic signals associated with lung function.	Lung function (maximal voluntary ventilation)	8,842 Korean ancestry individuals	NA	3p14.2	FHIT	rs9833533-?	NR	3E-8		6.68	unit increase	Affymetrix [2476376] (imputed)	N
1048	chr3	60712139	60712140	rs1623349	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	3p14.2		rs1623349-A	NR	6E-6		0.3154	unit increase	Illumina [8524982] (imputed)	N
1048	chr3	60763255	60763256	rs11919041	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	3p14.2	NPCDR1, PTPRG	rs11919041-T	0.287	2E-6		0.082	[0.049-0.115] cup size decrease	Illumina [7422970] (imputed)	N
1048	chr3	60771107	60771108	rs6791644	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p14.2	FHIT	rs6791644-?	NR	8E-6	(count)			Perlegen [429981]	N
1048	chr3	60802579	60802580	rs56290432	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Caudal anterior-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p14.2	FHIT	rs56290432-?		2E-6				Illumina [4322238] (imputed)	N
1048	chr3	60809239	60809240	rs1839069	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	3p14.2	FHIT	rs1839069-?	NR	3E-11	(EA)	0.004473	[0.0019-0.0071] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1048	chr3	60812146	60812147	rs2594136	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	3p14.2	FHIT	rs2594136-?	NR	9E-10		0.003723	[0.0013-0.0062] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1048	chr3	60816907	60816908	rs2736750	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.2		rs2736750-A	0.7878	2E-8	(conditional-joint)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr3	60817321	60817322	rs2736752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.2		rs2736752-T	0.7869	3E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1048	chr3	60817321	60817322	rs2736752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.2	Intergenic	rs2736752-T	0.7869	1E-8	(MTAG)	0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1049	chr3	60837615	60837616	rs114685959	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	3p14.2	FHIT	rs114685959-A	0.058703394255874675	6E-6	(AA)	0.7616	[0.43-1.09] unit increase	Illumina [at least 988306] (imputed)	N
1049	chr3	60868237	60868238	rs11922368	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p14.2	FHIT	rs11922368-C	0.70421875	3E-9	(FHIT, 9826_135_3)	0.15802951	[0.11-0.21] unit decrease	Illumina [> 1000000] (imputed)	N
1049	chr3	60879537	60879538	rs6764919	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p14.2	FHIT	rs6764919-G	0.736662	2E-9		0.0135312	[0.0089-0.0181] unit increase	NR [16516521] (imputed)	N
1049	chr3	60884658	60884659	rs11130793	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p14.2	NR	rs11130793-?		5E-9		0.0129223	[0.0086-0.0173] unit increase	Affymetrix [19400418] (imputed)	N
1049	chr3	60921745	60921746	rs78693890	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p14.2	FHIT	rs78693890-?		2E-6				Illumina [4322238] (imputed)	N
1049	chr3	60927832	60927833	rs138741635	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in placebo-treated cardiovascular disease (time to event)	1,440 European, African American, Asian and other ancestry cases	NA	3p14.2	FHIT	rs138741635-A	0.019	3E-8		2.02	[1.59-2.56]	Affymetrix, Illumina [9334585] (imputed)	N
1049	chr3	60927832	60927833	rs138741635	28753643	Yeo A	2017-07-28	PLoS One	Pharmacogenetic meta-analysis of baseline risk factors, pharmacodynamic, efficacy and tolerability endpoints from two large global cardiovascular outcomes trials for darapladib.	Major coronary event in cardiovascular disease (time to event) (darapladib treatment interaction)	1,318 European, African American, Asian and other ancestry darapladib-treated cases, 1,440 European, African American, Asian and other ancestry placebo-treated cases	NA	3p14.2	FHIT	rs138741635-A	0.019	2E-6				Affymetrix, Illumina [9334585] (imputed)	N
1049	chr3	60933801	60933802	rs1562523	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p14.2		rs1562523-G	0.55531	5E-6		0.030592	[0.017-0.044] unit decrease	Affymetrix [15580782] (imputed)	N
1049	chr3	60933801	60933802	rs1562523	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p14.2	FHIT	rs1562523-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
1049	chr3	60937048	60937049	rs9849262	27114598	Liu C	2016-04-25	J Clin Oncol	Clinical and Genetic Risk Factors for Acute Pancreatitis in Patients With Acute Lymphoblastic Leukemia.	Asparaginase-induced acute pancreatitis in acute lymphoblastic leukemia (onset time)	46 European ancestry cases with pancreatitis, 3,023 European ancestry cases without pancreatitis, 11 Black cases with pancreatitis, 339 Black cases without pancreatitis, 46 Hispanic cases with pancreatitis, 1,131 Hispanic cases without pancreatitis, 1 Asian ancestry case with pancreatitis, 98 Asian ancestry cases without pancreatitis, 13 cases with with pancreatitis, 477 cases without pancreatitis	NA	3p14.2	FHIT	rs9849262-T	0.01	8E-6		1.4	[0.81-1.99]	Affymetrix [at least 751455]	N
1050	chr3	60987814	60987815	rs6446175	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.2	PTPRG	rs6446175-?	NR	8E-6	(CE 16:1)	0.17818528	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1050	chr3	60995599	60995600	rs6782531	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	3p14.2	FHIT	rs6782531-G		8E-7	(EA, SBP, Age 40-49)	0.97	[0.58-1.36] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1051	chr3	61082152	61082153	rs9825823	28049566	Direk N	2016-12-08	Biol Psychiatry	An Analysis of Two Genome-wide Association Meta-analyses Identifies a New Locus for Broad Depression Phenotype.	Depressive symptom measurement or major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls, 51,150 European ancestry individuals with depressive symptom measurement	6,879 European ancestry cases, 13,453 European ancestry controls, 5,303 Chinese ancestry cases, 5,337 Chinese ancestry controls, 8,157 European American individuals with depressive symptom measurement	3p14.2	FHIT	rs9825823-?	NR	7E-10		6.2	Z score increase	Affymetrix, Illumina, Perlegen [918921] (imputed)	N
1051	chr3	61111925	61111926	rs61703631	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD19 on IgD+ CD38+ B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p14.2		rs61703631-T	0.17238	7E-9		0.1956	[0.13-0.26] unit increase	Illumina [18238311] (imputed)	N
1051	chr3	61116008	61116009	rs1821942	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.2	PTPRG	rs1821942-?	NR	6E-6	(SM 22:1)	0.2054238	[0.12-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1051	chr3	61127204	61127205	rs9877396	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	3p14.2	FHIT	rs9877396-?	0.28	3E-6	(EA)	2.0	[NR]	Illumina [1795103]	N
1051	chr3	61130524	61130525	rs112765699	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p14.2	NR	rs112765699-A	0.014544000000000001	2E-8		0.0747999	[0.049-0.1] unit increase	Affymetrix [16577313] (imputed)	N
1051	chr3	61143921	61143922	rs11130820	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3p14.2	NR	rs11130820-T	0.3584	8E-9		0.024904804	[0.016-0.033] unit increase	NR [NR]	N
1051	chr3	61153577	61153578	rs1966136	30626913	Amare AT	2019-01-09	Mol Psychiatry	Bivariate genome-wide association analyses of the broad depression phenotype combined with major depressive disorder, bipolar disorder or schizophrenia reveal eight novel genetic loci for depression.	Broad depression or schizophrenia	9,240 European ancestry broad depression cases, 9,519 European ancestry broad depression controls, 51,258 European ancestry individuals, 36,989 European and East Asian ancestry schizophrenia cases, 113,075 European and East Asian ancestry schizophrenia controls	322,580 individuals	3p14.2	FHIT	rs1966136-A	0.41	6E-11				Affymetrix, Illumina [at least 918921] (imputed)	N
1051	chr3	61157773	61157774	rs1554600	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	3p14.2	FHIT	rs1554600-?		5E-9	(French Canadians)	3.8619583		Illumina [7614484] (imputed)	N
1051	chr3	61160225	61160226	rs13320646	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs13320646-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1051	chr3	61181317	61181318	rs11707813	27560520	Shaffer JR	2016-08-25	PLoS Genet	Genome-Wide Association Study Reveals Multiple Loci Influencing Normal Human Facial Morphology.	Lip morphology	2,447 European ancestry individuals	671 European ancestry individuals	3p14.2	Intergenic	rs11707813-C	0.1621	1E-7	(Philtrum length)	0.3952	[0.23-0.56] unit increase	Illumina [34985077] (imputed)	N
1051	chr3	61187045	61187046	rs1916801	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p14.2	NA	rs1916801-A	0.616	2E-24		0.0169	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
1051	chr3	61187045	61187046	rs1916801	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p14.2	NA	rs1916801-A	0.616	2E-24		0.0169	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
1051	chr3	61187045	61187046	rs1916801	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p14.2	NA	rs1916801-A	0.616	2E-24		0.0169	[0.014-0.02] unit increase	NR [~ 27400000] (imputed)	N
1051	chr3	61192910	61192911	rs141954845	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	3p14.2	NR	rs141954845-A	0.388	1E-15		1.018	[1.014-1.022]	NR [8098588] (imputed)	N
1051	chr3	61193646	61193647	rs7432943	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	3p14.2		rs7432943-?	NR	1E-9		0.0165	unit decrease	NR [NR]	N
1051	chr3	61198879	61198880	rs4688359	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p14.2	FHIT	rs4688359-C	0.626072	2E-19		0.0130482	[0.01-0.016] unit increase	Affymetrix [12370749]	N
1051	chr3	61204911	61204912	rs3915074	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p14.2	NR	rs3915074-?	NR	6E-8		0.14369	[0.092-0.196] unit decrease	Affymetrix [7794483] (imputed)	N
1051	chr3	61208618	61208619	rs17668356	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs17668356-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1052	chr3	61219864	61219865	rs6445198	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p14.2	FHIT	rs6445198-G	0.584018	4E-15		0.0109609	[0.0082-0.0137] unit increase	Affymetrix [12370749]	N
1052	chr3	61232974	61232975	rs1916799	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p14.2	FHIT	rs1916799-A	0.1501	3E-7		0.0477	[0.029-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr3	61232974	61232975	rs1916799	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p14.2	FHIT	rs1916799-A	0.1498	6E-7		0.0488	[0.03-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr3	61232974	61232975	rs1916799	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p14.2	FHIT	rs1916799-A	0.1498	6E-7		0.0488	[0.03-0.068] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr3	61232974	61232975	rs1916799	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p14.2	FHIT	rs1916799-A	0.1501	2E-8		0.0522	[0.034-0.07] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p14.2	NR	rs2365389-C	NR	3E-15		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p14.2	FHIT	rs2365389-T	0.4	9E-14		0.021	[0.015-0.027] unit decrease	Illumina [6108953] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5865	2E-6	(EA,women)	0.0256	[0.015-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5858	5E-12	(EA)	0.0291	[0.021-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5842	2E-7	(men)	0.0323	[0.02-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5738	3E-12		0.0288	[0.021-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5668	6E-7	(women)	0.0258	[0.016-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	8E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	6E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	5E-10	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	4E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	2E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-?	NR	1E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5858	7E-14	(EA)	0.0284	[0.021-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5858	4E-6	(EA, women)	0.0225	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5858	3E-10	(EA, men)	0.0349	[0.024-0.046] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5738	2E-14		0.0283	[0.021-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5738	2E-10	(men)	0.0346	[0.024-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.2	FHIT	rs2365389-C	0.5738	1E-6	(women)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	3E-8	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	2E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	1E-11	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	3E-8		0.0396	[0.026-0.054] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	3E-6	(women)	0.0453	[0.026-0.064] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	7E-11		0.0252	[0.018-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	3E-10	(men)	0.0359	[0.025-0.047] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	4E-15		0.0266	[0.02-0.033] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	3E-7	(women)	0.0225	[0.014-0.031] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.2	FHIT	rs2365389-T	0.4348	2E-10	(men)	0.0319	[0.022-0.042] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	3p14.2	FHIT	rs2365389-C	NR	4E-12	(additive model)	0.029	[0.021-0.037] unit increase	NR [9288881] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p14.2	NR	rs2365389-T	0.420043313355259	4E-13		0.019783955	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1052	chr3	61236461	61236462	rs2365389	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.2	FHIT	rs2365389-C	0.582	3E-6	(EA, men)	0.019	[0.011-0.027] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1052	chr3	61236461	61236462	rs2365389	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.2	FHIT	rs2365389-C	0.582	2E-10	(EA)	0.02	[0.014-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1052	chr3	61236461	61236462	rs2365389	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.2	FHIT	rs2365389-C	0.581	3E-7	(EA, women)	0.02	[0.012-0.028] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1052	chr3	61236461	61236462	rs2365389	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.2	FHIT	rs2365389-C	0.572	1E-10		0.02	[0.014-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1052	chr3	61242471	61242472	rs11917500	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs11917500-G	0.01045	6E-9	(LAMP2)	0.01796	NR unit increase	Illumina [1671387] (imputed)	N
1052	chr3	61242471	61242472	rs11917500	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs11917500-G	0.01045	2E-11	(LAMP1)	0.0153	NR unit increase	Illumina [1671387] (imputed)	N
1052	chr3	61245469	61245470	rs9631502	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p14.2		rs9631502-C	NR	2E-12		0.0135	[0.0098-0.0172] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1052	chr3	61262148	61262149	rs815710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p14.2	NR	rs815710-G	0.407192679055767	2E-9		0.005638919	[0.0038-0.0075] unit increase	NR [NR]	N
1052	chr3	61262148	61262149	rs815710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p14.2	NR	rs815710-G	0.407192679055767	3E-9		0.006895087	[0.0046-0.0092] unit increase	NR [NR]	N
1052	chr3	61262148	61262149	rs815710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p14.2	NR	rs815710-G	0.407192679055767	3E-9		0.008933663	[0.006-0.0119] unit increase	NR [NR]	N
1052	chr3	61262148	61262149	rs815710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Life satisfaction	80,852 European ancestry individuals	NA	3p14.2	NR	rs815710-G	0.407192679055767	8E-9		0.0073321597	[0.0048-0.0098] unit increase	NR [NR]	N
1052	chr3	61262148	61262149	rs815710	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p14.2	NR	rs815710-G	0.407192679055767	2E-9		0.0057394486	[0.0039-0.0076] unit increase	NR [NR]	N
1052	chr3	61264083	61264084	rs815715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p14.2		rs815715-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1052	chr3	61264083	61264084	rs815715	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.2		rs815715-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1052	chr3	61264379	61264379	rs5849410	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p14.2		rs5849410-C	0.59	2E-9				NR [NR] (imputed)	N
1052	chr3	61264379	61264379	rs5849410	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p14.2		rs5849410-C	0.59	1E-12		0.011	% increase	NR [NR] (imputed)	N
1052	chr3	61264543	61264543	rs148535477	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p14.2		rs148535477-TG	NR	6E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1052	chr3	61264543	61264543	rs148535477	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p14.2	NR	rs148535477-TG	0.1637	3E-11		0.02226436	[0.016-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1052	chr3	61269667	61269668	rs17639996	31504550	Bradfield JP	2019-07-05	Hum Mol Genet	A Trans-ancestral Meta-Analysis of Genome-Wide Association Studies Reveals Loci Associated with Childhood Obesity.	Childhood obesity	8,613 European ancestry cases, 3,213 African American cases, 69 Moroccan ancestry cases, 986 Hispanic/Latino cases, 124 East Asian ancestry cases, 12,696 European ancestry controls, 1,392 African American controls, 64 Moroccan ancestry controls, 993 Hispanic/Latino controls, 454 East Asian ancestry controls	NA	3p14.2	NR	rs17639996-A	NR	8E-7	(EA)	0.1301	[0.078-0.182] unit decrease	Affymetrix, Illumina [up to 15123508] (imputed)	N
1052	chr3	61271328	61271329	rs9818550	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p14.2	NR	rs9818550-?	NR	3E-8		0.13132	[0.085-0.178] unit decrease	Affymetrix [7794483] (imputed)	N
1052	chr3	61271328	61271329	rs9818550	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p14.2	FHIT	rs9818550-T	0.7184	6E-9		0.0578	[0.038-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1052	chr3	61279725	61279726	rs66956368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p14.2	NR	rs66956368-T	0.702714	2E-19		0.0304555	[0.024-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1052	chr3	61279725	61279726	rs66956368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3p14.2	NR	rs66956368-T	0.70316	2E-13		0.0167712	[0.012-0.021] unit increase	Affymetrix [16583148] (imputed)	N
1052	chr3	61279725	61279726	rs66956368	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p14.2	NR	rs66956368-T	0.702703	8E-23		0.0335677	[0.027-0.04] unit increase	Affymetrix [16577424] (imputed)	N
1052	chr3	61298954	61298955	rs1453750	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p14.2	intergenic	rs1453750-G	0.335947	9E-6	(females)	0.00856	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1052	chr3	61298954	61298955	rs1453750	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3p14.2	intergenic	rs1453750-G	0.335947	6E-8	(females)	0.01153	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1052	chr3	61337305	61337306	rs73102900	34859065	Zhang F	2021-11-11	Front Cardiovasc Med	Shared Genetic Liability and Causal Associations Between Major Depressive Disorder and Cardiovascular Diseases.	Major depressive disorder or stroke (pleiotropy)	135,458 European ancestry MDD cases, 40,585 European ancestry stroke cases, 751,012 European ancestry controls	NA	3p14.2		rs73102900-?	NR	9E-9				NR [8243736]	N
1053	chr3	61413813	61413814	rs10514718	20125088	Shi J	2010-02-02	Mol Psychiatry	Genome-wide association study of recurrent early-onset major depressive disorder.	Major depressive disorder	1,020 European ancestry cases, 1,636 European ancestry controls	NA	3p14.2	FHIT, PTPRG	rs10514718-C	0.94	4E-6		2.12		Affymetrix [671424]	N
1054	chr3	61499608	61499609	rs2001841	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3p14.2	LOC105377114, PTPRG	rs2001841-?	NR	6E-7		2.5		Illumina [6778521] (imputed)	N
1054	chr3	61511077	61511078	rs73111541	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.2	NR	rs73111541-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
1054	chr3	61518115	61518116	rs1320173	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.2	PTPRG	rs1320173-G	NR	1E-8		0.016192	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1054	chr3	61544964	61544965	rs56358876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p14.2		rs56358876-G	NR	3E-28		0.0247	[0.02-0.029] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1054	chr3	61545020	61545021	rs9851992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.2	PTPRG	rs9851992-G	NR	3E-11		0.0195023	[0.014-0.025] unit increase	Affymetrix [321114] (imputed)	N
1054	chr3	61547273	61547274	rs73093079	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.2	PTPRG	rs73093079-A	NR	4E-9		0.0294683	[0.02-0.039] unit decrease	Affymetrix [321114] (imputed)	N
1054	chr3	61554409	61554410	rs28444975	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.2	NR	rs28444975-?	NR	6E-18				Affymetrix [~ 8270000] (imputed)	N
1054	chr3	61557717	61557718	rs7621604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.2	PTPRG	rs7621604-G	NR	2E-13		0.0211026	[0.016-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1054	chr3	61557717	61557718	rs7621604	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3p14.2	PTPRG	rs7621604-G	NR	3E-13		0.0225859	[0.017-0.029] unit decrease	Affymetrix [321114] (imputed)	N
1054	chr3	61557717	61557718	rs7621604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p14.2		rs7621604-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1054	chr3	61557717	61557718	rs7621604	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.2		rs7621604-?	NR	4E-55				NR [~ 8900000] (imputed)	N
1054	chr3	61557774	61557775	rs73094710	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.2	PTPRG	rs73094710-G	NR	1E-12		0.0330085	[0.024-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1054	chr3	61557774	61557775	rs73094710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.2	NR	rs73094710-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1054	chr3	61557774	61557775	rs73094710	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.2	NR	rs73094710-?	NR	1E-20				Affymetrix [~ 8270000] (imputed)	N
1054	chr3	61559770	61559771	rs938959	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.2	PTPRG	rs938959-A	NR	3E-8		0.01601	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
1054	chr3	61568200	61568201	rs78288380	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PTPRG	rs78288380-?	NR	1E-11	(female)	1.89404	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1055	chr3	61620233	61620234	rs13061878	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	3p14.2	PTPRG	rs13061878-?	NR	8E-7				Affymetrix, Illumina [NR] (imputed)	N
1055	chr3	61634436	61634437	rs75577896	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3p14.2		rs75577896-T	0.043909	3E-8		0.0438189	[0.028-0.059] unit increase	Illumina [13479178] (imputed)	N
1055	chr3	61636155	61636156	rs7609954	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p14.2	PTPRG	rs7609954-T	NR	4E-8	(between families)	5.492	unit increase	Affymetrix [up to 15107142] (imputed)	N
1055	chr3	61637068	61637069	rs4688651	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		3p14.2	NR	rs4688651-A	0.14188	6E-6		1.0981276	[1.14-1.1]	Affymetrix [16499239] (imputed)	N
1055	chr3	61645622	61645623	rs4688652	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 122)	19,670 European ancestry individuals	NA	3p14.2		rs4688652-?	NR	3E-10				NR [9705931] (imputed)	N
1055	chr3	61656511	61656512	rs55869022	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p14.2	NR	rs55869022-C	0.867573	2E-9		0.0267278	[0.018-0.036] unit increase	Affymetrix [16577313] (imputed)	N
1055	chr3	61662995	61662996	rs13065463	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p14.2	NR	rs13065463-G	0.869148	9E-13		0.0320519	[0.023-0.041] unit increase	Affymetrix [16577424] (imputed)	N
1055	chr3	61711155	61711156	rs1608147	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	3p14.2	PTPRG	rs1608147-?	NR	2E-6		1.2305315	[1.13-1.34]	Illumina [5842835] (imputed)	N
1056	chr3	61762629	61762630	rs660323	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3p14.2	NR	rs660323-?	NR	5E-6	(AA)	5.58	[4.72-6.44]	Illumina [905956]	N
1056	chr3	61781404	61781405	rs78818696	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PTPRG	rs78818696-?	NR	2E-9		1.88212	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1056	chr3	61789996	61789997	rs73084089	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.2	NR	rs73084089-A	0.01045	6E-9	(GGT5)	0.097	NR unit increase	Illumina [1671387] (imputed)	N
1056	chr3	61794053	61794054	rs652889	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3p14.2	PTPRG	rs652889-A	0.36	8E-7		0.15	[0.09-0.21] unit decrease	Illumina [~ 318327]	N
1056	chr3	61803427	61803428	rs615854	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	3p14.2	PTPRG	rs615854-C	0.297872	2E-6		0.833501	[0.5-1.17] unit increase	NR [7263501] (imputed)	N
1056	chr3	61819534	61819535	rs35995169	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p14.2	PTPRG	rs35995169-G	0.402	8E-9		0.0134	[0.0088-0.018] unit increase	Illumina [~ 250000] (imputed)	N
1056	chr3	61847694	61847695	rs591988	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3p14.2	NR	rs591988-T	0.2663	4E-8		1.032	[1.02-1.04]	NR [8968716] (imputed)	N
1057	chr3	61948735	61948736	rs704341	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	3p14.2	PTPRG	rs704341-A	0.07	6E-7	(cohort study)	1.73	[1.40-2.14]	Affymetrix, Illumina [up to 2600000] (imputed)	N
1057	chr3	61948735	61948736	rs704341	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Stroke	up to 1,592 African American cases, up to 13,154 African American controls	NA	3p14.2	PTPRG	rs704341-A	0.07	6E-7		0.55	[0.33-0.77] unit increase	Affymetrix, Illumina [up to 2600000] (imputed)	N
1057	chr3	61948735	61948736	rs704341	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	3p14.2	PTPRG	rs704341-A	0.07	7E-7	(cohort study, AA)	1.85	[1.45-2.36]	Affymetrix, Illumina [~ 2600000] (imputed)	N
1057	chr3	61948735	61948736	rs704341	26089329	Carty CL	2015-06-18	Stroke	Meta-Analysis of Genome-Wide Association Studies Identifies Genetic Risk Factors for Stroke in African Americans.	Ischemic stroke	up to 1,365 African American cases, up to 13,154 African American controls	European ancestry individuals (see Traylor, 2012)	3p14.2	PTPRG	rs704341-A	0.07	7E-7	(AA)	0.62	[0.38-0.86] unit increase	Affymetrix, Illumina [~ 2600000] (imputed)	N
1057	chr3	61974948	61974949	rs40493	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p14.2	PTPRG	rs40493-C	NR	4E-6	(males)	0.13	[0.071-0.189] unit increase	Affymetrix, Illumina [7105178] (imputed)	N
1057	chr3	61977910	61977911	rs40409	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3p14.2		rs40409-?	NR	2E-6	(clearcell)	1.57		Illumina [11595112] (imputed)	N
1057	chr3	61993703	61993704	rs9825906	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.2		rs9825906-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1058	chr3	62036723	62036724	rs10490775	20825314	Baratz KH	2010-09-09	N Engl J Med	E2-2 protein and Fuchs's corneal dystrophy.	Fuchs's corneal dystrophy	130 European ancestry cases, 260 European ancestry controls	150 cases, 150 controls	3p14.2	PTPRG	rs10490775-A	0.10	1E-6		2.3	[1.64-3.22]	Illumina [~ 370000]	N
1058	chr3	62064768	62064769	rs11130874	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3p14.2	NR	rs11130874-?	NR	2E-6		1.1	[1.06-1.14]	Affymetrix, Illumina [1252901] (imputed)	N
1058	chr3	62100839	62100840	rs1911746	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p14.2	NA	rs1911746-T	0.2095	4E-9		0.0113	[0.0076-0.015] unit increase	NR [~ 27400000] (imputed)	N
1058	chr3	62112140	62112141	rs35593266	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	3p14.2	PTPRG, ID2B	rs35593266-A		5E-6		0.2196	unit increase	Illumina [5767231] (imputed)	N
1058	chr3	62112197	62112198	rs6445258	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p14.2	PTPRG	rs6445258-T	0.207559	9E-9		0.00971073	[0.0064-0.013] unit increase	Affymetrix [12370749]	N
1058	chr3	62112197	62112198	rs6445258	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs6445258-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1058	chr3	62112197	62112198	rs6445258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.2		rs6445258-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1059	chr3	62138953	62138954	rs7633054	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Bacteremia	1,536 African ancestry cases, 2,677 African ancestry controls	434 African ancestry cases, 1,336 African ancestry controls	3p14.2	PTPRG	rs7633054-?	NR	1E-7		1.36	[NR]	Affymetrix [up to 10996499] (imputed)	N
1059	chr3	62146071	62146072	rs73096591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.2		rs73096591-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1060	chr3	62290010	62290011	rs73087860	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	3p14.2	NR	rs73087860-T	NR	9E-6		0.7249	NR	Illumina [at least 560000] (imputed)	N
1060	chr3	62354424	62354425	rs6445264	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p14.2		rs6445264-A	NR	1E-9		0.0123	[0.0084-0.0162] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1060	chr3	62354424	62354425	rs6445264	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p14.2	FEZF2	rs6445264-G	0.330651	5E-8		0.0125547	[0.0081-0.0171] unit increase	NR [16516521] (imputed)	N
1060	chr3	62354424	62354425	rs6445264	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs6445264-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1060	chr3	62371836	62371837	rs71296770	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p14.2	CADPS	rs71296770-A	0.9	8E-11		0.02	unit decrease	Affymetrix [8928767] (imputed)	N
1060	chr3	62376644	62376645	rs6777784	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs6777784-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1060	chr3	62386074	62386075	rs13095889	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p14.2	NR	rs13095889-?	NR	3E-9	(left amygdala)			NR [9227495] (imputed)	N
1060	chr3	62386349	62386350	rs111793843	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3p14.2	CADPS	rs111793843-T	0.01	2E-8	(African)	0.05	[0.034-0.066] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1061	chr3	62390588	62390589	rs10866054	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p14.2	CADPS	rs10866054-T	0.2975	7E-10		0.017356327	[0.012-0.023] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1061	chr3	62411197	62411198	rs11706981	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs11706981-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1061	chr3	62428322	62428323	rs75189942	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p14.2	NA	rs75189942-T		4E-8		0.023185	[0.015-0.031] unit decrease	Illumina [13288253] (imputed)	N
1061	chr3	62432707	62432708	rs17066404	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (family Peptococcaceae id.2024)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3p14.2		rs17066404-G	NR	3E-8		5.5427814	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1061	chr3	62433039	62433040	rs7611540	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3p14.2	CADPS	rs7611540-T	0.3082	8E-6		0.0653	[0.037-0.094] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1061	chr3	62433910	62433911	rs13097150	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p14.2	NR	rs13097150-T	0.377	2E-9		0.015351431	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
1061	chr3	62442806	62442807	rs79158673	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p14.2	CADPS	rs79158673-G	0.01	3E-10		0.4954	[0.34-0.65] unit increase	Illumina [~ 9000000] (imputed)	N
1061	chr3	62442806	62442807	rs79158673	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3p14.2	CADPS	rs79158673-G	0.01	2E-10	(EA)	0.4992	[0.35-0.65] unit increase	Illumina [~ 9000000] (imputed)	N
1061	chr3	62459818	62459819	rs76824303	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3p14.2	CADPS	rs76824303-A		4E-8		0.0081	[0.0052-0.011] unit increase	Affymetrix [13304133] (imputed)	N
1061	chr3	62459818	62459819	rs76824303	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p14.2	CADPS	rs76824303-A	0.900098	9E-11		0.0151797	[0.011-0.02] unit increase	Affymetrix [12370749]	N
1061	chr3	62459818	62459819	rs76824303	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs76824303-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1061	chr3	62459818	62459819	rs76824303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.2		rs76824303-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1061	chr3	62462817	62462818	rs9874646	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p14.2	Intergenic	rs9874646-T	0.6729	6E-9	(MTAG)	0.0111	[0.0074-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr3	62471085	62471086	rs6774533	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (computer use)	408,815 European ancestry individuals	NA	3p14.2	NR	rs6774533-?		1E-9		0.0149436	[0.01-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1061	chr3	62471085	62471086	rs6774533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p14.2		rs6774533-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1061	chr3	62471085	62471086	rs6774533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p14.2	Intergenic	rs6774533-T	0.6952	6E-11	(MTAG)	0.0118	[0.0083-0.0153] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr3	62471085	62471086	rs6774533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.2		rs6774533-T	0.6985	4E-9		0.009	[0.0061-0.0119] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1061	chr3	62471085	62471086	rs6774533	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.2	Intergenic	rs6774533-T	0.6985	3E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1061	chr3	62471281	62471282	rs9968060	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p14.2	CADPS	rs9968060-T	0.6456	5E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1061	chr3	62478193	62478194	rs13325751	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3p14.2	CADPS	rs13325751-T	NR	6E-6		0.132	[0.075-0.189] unit increase	Illumina [628922]	N
1061	chr3	62481062	62481063	rs1452075	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	3p14.2	CADPS	rs1452075-T	0.721	6E-7		1.074	[NR]	Illumina [9112387] (imputed)	N
1061	chr3	62481062	62481063	rs1452075	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism and educational attainment (MTAG)	18,381 European ancestry autism cases, 27,969 European ancestry controls, 328,917 individuals with educational attainment data	NA	3p14.2		rs1452075-T	0.721	3E-9		0.061	[0.041-0.081] unit increase	Illumina [NR] (imputed)	N
1061	chr3	62481062	62481063	rs1452075	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p14.2	NA	rs1452075-T	0.7316	1E-10		0.0123	[0.0086-0.016] unit increase	NR [~ 27400000] (imputed)	N
1061	chr3	62481062	62481063	rs1452075	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p14.2	NA	rs1452075-T	0.7314	3E-12		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1061	chr3	62481062	62481063	rs1452075	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p14.2	NA	rs1452075-T	0.7314	3E-12		0.0128	[0.0093-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1061	chr3	62492171	62492172	rs57384528	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs57384528-?	NR	8E-10				Affymetrix [~ 8270000] (imputed)	N
1061	chr3	62514060	62514061	rs141962517	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Systolic blood pressure x educational attainment (graduated college) interaction (2df)	27,367 European ancestry college graduated individuals, 51,673 European ancestry non-college graduated individuals, 3,605 African ancestry college graduated individuals, 13,060 African ancestry non-college graduated individuals, 291 Asian ancestry college graduated individuals, 457 Asian ancestry non-college graduated individuals, 786 Hispanic/Latin American college graduated individuals, 4,359 Hispanic/Latin American non-college graduated individuals	67,506 European ancestry college graduated individuals, 189,531 European ancestry non-college graduated individuals, 781 African ancestry college graduated individuals, 6,417 African ancestry non-college graduated individuals, 651 Asian ancestry college graduated individuals, 5,296 Asian ancestry non-college graduated individuals, 1,703 Hispanic college graduated individuals, 9,928 Hispanic non-college graduated individuals	3p14.2	CADPS	rs141962517-T		3E-10		12.85	unit increase	Affymetrix, Illumina [~ 18800000] (imputed)	N
1062	chr3	62528122	62528123	rs1349596	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3p14.2	CADPS	rs1349596-T	0.075	6E-18		0.38	[0.3-0.47] unit decrease	Affymetrix [339439]	N
1062	chr3	62534434	62534435	rs17639063	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	3p14.2	CADPS	rs17639063-?	NR	3E-7	(Hispanic/Latino)	9.7	[5.98-13.42] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1062	chr3	62553027	62553028	rs75645041	31073882	Plotnikov D	2019-05-09	Hum Genet	A commonly occurring genetic variant within the NPLOC4-TSPAN10-PDE6G gene cluster is associated with the risk of strabismus.	Strabismus	1,345 British ancestry cases, 65,349 British ancestry controls	116 cases, 5,084 controls	3p14.2	NR	rs75645041-G	0.15	9E-6	(EA)	1.26	[1.14-1.40]	Affymetrix [7469170] (imputed)	N
1062	chr3	62553027	62553028	rs75645041	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.2		rs75645041-C	0.8429	2E-8	(conditional-joint)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1062	chr3	62556621	62556622	rs833663	33691233	Peterson RE	2021-02-18	J Psychiatr Res	Genome-wide analyses of smoking behaviors in schizophrenia: Findings from the Psychiatric Genomics Consortium.	Cigarettes smoked per day in Schizophrenia	3,370 European ancestry individuals	1,802 East Asian individuals	3p14.2	CADPS	rs833663-?	NR	5E-7				NR [9500000] (imputed)	N
1062	chr3	62560522	62560523	rs6786550	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.2	NR	rs6786550-T	0.361	1E-17				NR [9056863] (imputed)	N
1062	chr3	62560522	62560523	rs6786550	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	3p14.2	CADPS	rs6786550-?	NR	3E-9		0.0150617	[0.01-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1062	chr3	62560522	62560523	rs6786550	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p14.2	CADPS	rs6786550-?	NR	7E-9		0.014587	[0.0096-0.0195] unit decrease	Affymetrix [25921788] (imputed)	N
1062	chr3	62560812	62560813	rs833653	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.2		rs833653-T	0.38	7E-18		8.62	z score increase	Affymetrix [9061022] (imputed)	N
1062	chr3	62560812	62560813	rs833653	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p14.2	CADPS	rs833653-?		1E-8				NR [7428630] (imputed)	N
1062	chr3	62561214	62561215	rs2924116	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.2		rs2924116-C	0.4	2E-11		6.7	z score increase	Affymetrix [9061022] (imputed)	N
1062	chr3	62561214	62561215	rs2924116	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.2	NR	rs2924116-C	0.3919	2E-10				NR [9056863] (imputed)	N
1062	chr3	62579630	62579631	rs866247	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.2		rs866247-G	0.32	7E-21		9.37	z score increase	Affymetrix [9061022] (imputed)	N
1062	chr3	62601365	62601366	rs1231831	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels  (X-11787)	1,260 African American individuals	NA	3p14.2	CADPS	rs1231831-C		2E-6		0.05	[0.03-0.07] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1062	chr3	62602013	62602014	rs540235500	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3p14.2		rs540235500-A	NR	7E-6		3.35181		Affymetrix, Illumina [62056310] (imputed)	N
1063	chr3	62711673	62711674	rs538579	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p14.2	CADPS	rs538579-G	0.685061	2E-8		0.0084219	[0.0055-0.0114] unit decrease	Affymetrix [12370749]	N
1063	chr3	62713142	62713143	rs925018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p14.2		rs925018-G	NR	2E-9		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1063	chr3	62713262	62713263	rs557951	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p14.2	CADPS	rs557951-T	0.687123	4E-8		0.00813953	[0.0052-0.011] unit decrease	Affymetrix [12370749]	N
1063	chr3	62713262	62713263	rs557951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.2		rs557951-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1063	chr3	62714916	62714917	rs539100	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs539100-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1063	chr3	62714916	62714917	rs539100	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p14.2	NA	rs539100-A	0.2189	3E-10		0.0131	[0.009-0.0172] unit increase	NR [~ 27400000] (imputed)	N
1063	chr3	62733365	62733366	rs580384	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Breast size	33,790 European ancestry individuals	NA	3p14.2	CADPS	rs580384-?	NR	2E-6				Illumina [12039487] (imputed)	N
1063	chr3	62733365	62733366	rs580384	22747683	Eriksson N	2012-06-30	BMC Med Genet	Genetic variants associated with breast size also influence breast cancer risk.	Breast size	16,175 European ancestry female individuals	NA	3p14.2	CADPS	rs580384-C	0.089	4E-6		0.124	[0.071-0.177] cup size decrease	Illumina [7422970] (imputed)	N
1063	chr3	62782467	62782468	rs304172	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p14.2	NR	rs304172-G	0.956126387053571	8E-6	(IGP36)	0.3337	[0.19-0.48] unit decrease	Illumina [~ 2500000] (imputed)	N
1064	chr3	62790622	62790623	rs487321	31932636	Hebbar P	2020-01-13	Sci Rep	Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population.	Fasting plasma glucose	1,353 Arab ancestry individuals	1,176 Arab ancestry individuals	3p14.2	CADPS	rs487321-A	NR	2E-12		7.047	[NR] unit increase	Illumina [632375]	N
1064	chr3	62830114	62830115	rs581043	26859814	den Braber A	2016-02-09	Transl Psychiatry	Obsessive-compulsive symptoms in a large population-based twin-family sample are predicted by clinically based polygenic scores and by genome-wide SNPs.	Obsessive-compulsive symptoms	6,931 individuals	NA	3p14.2	CADPS	rs581043-C	NR	5E-6		0.4358	unit increase	Affymetrix, Illumina, Perlegen [31265038] (imputed)	N
1064	chr3	62849212	62849213	rs2577814	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.2	FEZF2	rs2577814-?	NR	7E-6	(CE 20:5)	4.8920774	[2.76-7.03] unit increase	Affymetrix [at least 2500000] (imputed)	N
1064	chr3	62863468	62863469	rs304234	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Lead levels	587 Han Chinese ancestry individuals	NA	3p14.2		rs304234-?	NR	2E-6		0.12	[-0.80316-1.04316] unit increase	Affymetrix [6423076] (imputed)	N
1064	chr3	62871907	62871908	rs117829974	29923122	Kakuta Y	2018-06-19	J Gastroenterol	NUDT15 codon 139 is the best pharmacogenetic marker for predicting thiopurine-induced severe adverse events in Japanese patients with inflammatory bowel disease: a multicenter study.	Thiopurine-induced leukopenia in inflammatory bowel disease	196 Japanese ancestry cases, 1,024 Japanese ancestry controls	NA	3p14.2	CADPS	rs117829974-?	NR	2E-7		2.1	[1.6-2.7]	Affymetrix [> 5000000] (imputed)	N
1066	chr3	63050226	63050227	rs7644552	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.2	NR	rs7644552-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1066	chr3	63050226	63050227	rs7644552	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.2		rs7644552-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1066	chr3	63074218	63074219	rs4688370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p14.2	Intergenic	rs4688370-T	0.1501	1E-8	(MTAG)	0.0132	[0.0087-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1066	chr3	63074218	63074219	rs4688370	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p14.2	Intergenic	rs4688370-C	0.8499	5E-9		0.0186	[0.012-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1066	chr3	63133848	63133849	rs72874541	28115744	Ikeda M	2017-01-24	Mol Psychiatry	A genome-wide association study identifies two novel susceptibility loci and trans population polygenicity associated with bipolar disorder.	Bipolar disorder	2,964 Japanese ancestry case, 61,887 Japanese ancestry controls, 7,481 European ancestry cases, 9,250 European ancestry controls	NA	3p14.2	LOC285401	rs72874541-G	NR	2E-7	(Japanese)	1.23368	[1.13997-1.33509]	Illumina [at least 6195093] (imputed)	N
1067	chr3	63236809	63236810	rs13098482	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p14.2	NR	rs13098482-?	NR	4E-7	(Japanese)	0.683	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1067	chr3	63268488	63268489	rs6794810	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p14.2	NR	rs6794810-?	NR	9E-6		4.443	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1068	chr3	63325579	63325580	rs73108923	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Major depressive disorder	6,997 European ancestry female cases, 16,172 European ancestry female controls, 3,852 European ancestry male cases, 16,034 European ancestry male controls	NA	3p14.2	SYNPR	rs73108923-A	NR	6E-6	(males)	0.3	[0.16-0.44] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1068	chr3	63326346	63326347	rs11706534	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7177 sp002491225 abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.2		rs11706534-A	0.105183	1E-9		0.0537092	[0.036-0.071] unit increase	Illumina [7980478] (imputed)	N
1068	chr3	63326346	63326347	rs11706534	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA7177 abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.2		rs11706534-A	0.105183	3E-10		0.0598802	[0.041-0.078] unit increase	Illumina [7980478] (imputed)	N
1068	chr3	63412568	63412569	rs17031729	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.2	NR	rs17031729-?	NR	8E-8				Affymetrix [NR]	N
1069	chr3	63438885	63438886	rs1975649	25138779	Mitchell LE	2014-08-18	Hum Mol Genet	Genome-wide association study of maternal and inherited effects on left-sided cardiac malformations.	Congenital left-sided heart lesions	284 European ancestry case-parent trios, up to 93 case-parent trios	216 European ancestry case-parent trios, 8 case-parent trios	3p14.2	SYNPR	rs1975649-?	0.33	3E-7		1.65	[1.36-2.01]	Illumina [1712604] (imputed)	N
1069	chr3	63439333	63439334	rs9823776	30675382	Leblond CS	2019-01-21	NPJ Genom Med	Both rare and common genetic variants contribute to autism in the Faroe Islands.	Autism	36 European ancestry, 176 European ancestry controls	NA	3p14.2	SYNPR	rs9823776-A		5E-6				Illumina [1690491] (imputed)	N
1069	chr3	63481393	63481394	rs4688406	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	3p14.2	SYNPR-AS1, SYNPR	rs4688406-?	NR	4E-6		1.2928599	[1.16-1.44]	Illumina [at least 4756772] (imputed)	N
1069	chr3	63537359	63537360	rs773204082	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	3p14.2	SYNPR	rs773204082-T	0.0015	9E-6		0.942	[0.53-1.36] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1069	chr3	63544530	63544531	rs34796321	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	3p14.2	NR	rs34796321-?	NR	5E-6		0.08680888	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
1070	chr3	63595460	63595461	rs113612577	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	3p14.2	SYNPR	rs113612577-T	0.014	9E-6		6.38	[2.81-14.5]	Illumina [7759885] (imputed)	N
1070	chr3	63628448	63628449	rs140642874	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	3p14.2	NR	rs140642874-G		7E-6		0.6694	[0.36-0.98] SD units decrease	NR [10700000] (imputed)	N
1070	chr3	63644693	63644694	rs924067	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3p14.2	SNTN	rs924067-T	NR	1E-8	(PWY-6215_4-chlorobenzoate_degradation)	5.6681013	NR Z-score decrease	Illumina [8100000] (imputed)	N
1070	chr3	63645409	63645410	rs73111385	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Bisphosphonate-associated atypical femoral fracture	50 European ancestry cases, 1 Chilean ancestry case, 4,891 European ancestry controls	NA	3p14.2	SNTN	rs73111385-G	0.031	6E-8		5.042	[2.811-9.045]	Illumina [7585874] (imputed)	N
1070	chr3	63665056	63665057	rs78591196	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	3p14.2	SNTN	rs78591196-C	0.916	2E-6	(Mean vigilance)	0.2537	[0.15-0.36] unit decrease	Affymetrix [8042262] (imputed)	N
1070	chr3	63673794	63673795	rs12108177	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	3p14.2	SNTN	rs12108177-G	NR	8E-6		0.21682	NR unit increase	NR [560698] (imputed)	N
1071	chr3	63703984	63703985	rs7623146	22205395	Tekola Ayele F	2011-12-29	Immunogenetics	Genome-wide associated loci influencing interleukin (IL)-10, IL-1Ra, and IL-6 levels in African Americans.	Interleukin-6 levels	697 African American individuals	NA	3p14.2	AC136289.1	rs7623146-A	0.1	7E-7		0.14	unit decrease	Affymetrix [5396780] (imputed)	N
1071	chr3	63719238	63719239	rs13097862	29478698	Cheng Z	2018-01-11	Biol Psychiatry	Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.	Opioid dependence	3,058 European ancestry individuals	2,014 African American individuals	3p14.2	NR	rs13097862-?	NR	9E-7	(EA)	0.68	unit decrease	Illumina [at least 4700000] (imputed)	N
1071	chr3	63749404	63749405	rs13098181	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	3p14.2	THOC7	rs13098181-A	NR	7E-6		0.22507	NR unit increase	NR [560698] (imputed)	N
1071	chr3	63762993	63762994	rs10510908	30571770	Arnau-Soler A	2018-12-20	PLoS One	Genome-wide interaction study of a proxy for stress-sensitivity and its prediction of major depressive disorder.	Stress sensitivity (neuroticism score x major depressive disorder status interaction)	2,010 European ancestry cases, 5,145 European ancestry controls	NA	3p14.2	THOC7	rs10510908-A	NR	2E-6		0.23672	NR unit increase	NR [560698] (imputed)	N
1071	chr3	63813653	63813654	rs7614311	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FVC)	1,015 European ancestry individuals, 541 African American individuals	NA	3p14.1	NR	rs7614311-?		1E-6	(AA)			Illumina [up to 524000]	N
1071	chr3	63813653	63813654	rs7614311	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (FEV1)	1,015 European ancestry individuals, 541 African American individuals	NA	3p14.1	NR	rs7614311-?		6E-6	(AA)			Illumina [up to 524000]	N
1071	chr3	63823014	63823014	rs35256080	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p14.1		rs35256080-AT	NR	2E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA	3p14.1	NR	rs35256080-AT	NR	7E-10		1.0459		Affymetrix [9869154] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	3p14.1	ATXN7	rs35256080-AT	NR	3E-8		1.02	[1.01-1.03]	Affymetrix [9869154] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p14.1	THOC7, C3orf49	rs35256080-AT	0.646029	5E-11		0.015279718	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p14.1	THOC7, C3orf49	rs35256080-AT	0.646084	2E-9		0.014041285	[0.0095-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p14.1	NR	rs35256080-I	0.645896	7E-13		0.015395	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1071	chr3	63823014	63823014	rs35256080	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p14.1	NR	rs35256080-I	0.64591	5E-12		0.014978	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1072	chr3	63833049	63833050	rs832187	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	3p14.1	NR	rs832187-T	0.5984	1E-8		0.06439985	[0.042-0.086] unit decrease	NR [NR]	N
1072	chr3	63833049	63833050	rs832187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs832187-T	0.60147	4E-14				Affymetrix, Illumina [24649327] (imputed)	N
1072	chr3	63833049	63833050	rs832187	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3p14.1	NR	rs832187-?		5E-9				NR [8377093]	N
1072	chr3	63833049	63833050	rs832187	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p14.1	THOC7, C3orf49	rs832187-?	NR	2E-8		0.011610742	[0.0076-0.0156] unit increase	NR [7306098]	N
1072	chr3	63833049	63833050	rs832187	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3p14.1	ATXN7, C3orf49, PSMD6, THOC7	rs832187-C	0.385	1E-8		1.0626993	[1.04-1.08]	Affymetrix, Illumina [9005918] (imputed)	N
1072	chr3	63833387	63833388	rs34196118	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	3p14.1		rs34196118-T	NR	2E-11		0.0417	[0.03-0.054] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1072	chr3	63842628	63842629	rs832190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs832190-T	0.616525	3E-11				Affymetrix, Illumina [23114412] (imputed)	N
1072	chr3	63842628	63842629	rs832190	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3p14.1	NR	rs832190-?		3E-9				NR [8377093]	N
1072	chr3	63842628	63842629	rs832190	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3p14.1	THOC7, ATXN7	rs832190-?		4E-9				NR [6786993] (imputed)	N
1072	chr3	63842628	63842629	rs832190	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p14.1	NR	rs832190-?	NR	4E-8		1.0499018	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1072	chr3	63842628	63842629	rs832190	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p14.1	THOC7	rs832190-C	NR	6E-10	(EA)	1.072	[1.05-1.09]	Illumina [6627481] (imputed)	N
1072	chr3	63842628	63842629	rs832190	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p14.1	THOC7	rs832190-C	NR	5E-9		1.059322	[1.04-1.08]	Illumina [6627481] (imputed)	N
1072	chr3	63842628	63842629	rs832190	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p14.1	ATXN7, THOC7	rs832190-C	NR	4E-8		1.0548522	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1072	chr3	63842628	63842629	rs832190	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p14.1	NR	rs832190-C	NR	3E-8		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1072	chr3	63850297	63850298	rs6779372	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p14.1		rs6779372-G	NR	6E-10		0.0157	[0.011-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1072	chr3	63856869	63856870	rs3774702	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	3p14.1	ATXN7	rs3774702-G	0.8231999999999999	1E-10		0.147	[0.1-0.19] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1072	chr3	63867354	63867355	rs704373	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3p14.1	ATXN7, C3orf49, PSMD6, PSMD6-AS2, THOC7, THOC7-AS1	rs704373-?	NR	1E-10		1.067	[1.05-1.09]	Illumina [8000000] (imputed)	N
1072	chr3	63869216	63869217	rs3836523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p14.1		rs3836523-T	NR	4E-12		0.0198	[0.014-0.025] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1072	chr3	63874733	63874734	rs704364	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs704364-?	NR	3E-9				NR [2625067]	N
1072	chr3	63874733	63874734	rs704364	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA		NR	rs704364-?	NR	7E-8				Illumina [up to 5582932] (imputed)	N
1072	chr3	63882475	63882476	rs3774709	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.1		rs3774709-C	0.16	8E-10		6.15	z score increase	Affymetrix [9061022] (imputed)	N
1072	chr3	63882475	63882476	rs3774709	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	C3orf49, THOC7, ATXN7, PSMD6	rs3774709-?		3E-8				NR [7428630] (imputed)	N
1072	chr3	63897214	63897215	rs2292662	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p14.1	NR	rs2292662-C	0.8436	8E-18		0.0556	[0.043-0.068] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1072	chr3	63897214	63897215	rs2292662	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3p14.1	ATXN7	rs2292662-T	0.151271963500907	1E-8		0.0629	[0.041-0.085] unit decrease	NR [5035015] (imputed)	N
1072	chr3	63904715	63904717	rs67114627	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3p14.1	PSMD6	rs67114627-AAG	0.646	9E-32		1.09	[1.07-1.10]	Affymetrix, Illumina [11800000] (imputed)	N
1072	chr3	63941696	63941697	rs3821902	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p14.1	NR	rs3821902-G	0.1358	3E-12	(EA)	0.0623	[0.045-0.08] unit increase	Illumina [~ 11800000] (imputed)	N
1072	chr3	63948565	63948566	rs13434089	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p14.1	NR	rs13434089-C	0.2034	4E-31		0.0607	[0.051-0.071] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1072	chr3	63962338	63962339	rs3774723	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p14.1	PSMD6	rs3774723-G	0.8442	2E-13		1.07	[1.05-1.09]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1073	chr3	63967899	63967900	rs1053338	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p14.1		rs1053338-A	NR	7E-10		0.95	[0.94-0.97]	Affymetrix, Illumina [NR] (imputed)	N
1073	chr3	63967899	63967900	rs1053338	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p14.1	ATNX7	rs1053338-G	0.14	5E-11	(EA)	1.05	[1.02-1.07] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1073	chr3	63967899	63967900	rs1053338	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	46,785 European ancestry cases, 42,892 European ancestry controls	NA	3p14.1	NR	rs1053338-G	0.13	2E-7		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 14000000] (imputed)	N
1073	chr3	63967899	63967900	rs1053338	25751625	Michailidou K	2015-04-01	Nat Genet	Genome-wide association analysis of more than 120,000 individuals identifies 15 new susceptibility loci for breast cancer.	Breast cancer	15,748 European ancestry cases, 18,084 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls	3p14.1	NR	rs1053338-G	0.13	9E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 11600000] (imputed)	N
1073	chr3	63974476	63974477	rs3774726	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3p14.1	ATXN7	rs3774726-T	0.363	5E-16		0.0021	[0.0015-0.0027] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1073	chr3	63981634	63981635	rs3733125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p14.1	ATXN7	rs3733125-T	0.101557	3E-11		0.024461646	[0.017-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1073	chr3	63981634	63981635	rs3733125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p14.1		rs3733125-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1073	chr3	63982081	63982082	rs3774729	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p14.1		rs3774729-A	0.3078	5E-10		0.099896744	[0.067-0.133] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1073	chr3	63982081	63982082	rs3774729	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p14.1		rs3774729-A	0.3079	4E-10		0.09751647	[0.068-0.127] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1073	chr3	63982669	63982670	rs112674299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3p14.1		rs112674299-T	NR	9E-16		0.0717	[0.054-0.089] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1073	chr3	63982669	63982670	rs112674299	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3p14.1		rs112674299-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1073	chr3	63989455	63989456	rs4688181	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	3p14.1	NR	rs4688181-?	0.04	1E-7	(EA)	3.22	[2.09-4.98]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1073	chr3	63995693	63995697	rs10576623	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3p14.1		rs10576623-T	0.329018864	2E-10		0.0662122	[0.046-0.087] unit decrease	Illumina [13134967] (imputed)	N
1073	chr3	63996261	63996262	rs1046025	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	WLS	rs1046025-?		2E-9				NR [7428630] (imputed)	N
1073	chr3	63999321	63999322	rs3816157	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	3p14.1	NR	rs3816157-G	0.6788	7E-15		0.0735	[0.055-0.092] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
1073	chr3	63999321	63999322	rs3816157	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3p14.1		rs3816157-A	0.324482853	3E-19		0.92405266	[0.908228207-0.940152838]	Illumina [8919992] (imputed)	N
1073	chr3	63999321	63999322	rs3816157	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3p14.1	PSMD6	rs3816157-G	0.68	3E-15		1.08	1.06-1.10	Illumina [12557761] (imputed)	N
1073	chr3	64000463	64000464	rs66473811	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3p14.1	PSMD6	rs66473811-T	0.8379	2E-14		0.0031	[0.0021-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1073	chr3	64002896	64002897	rs9828933	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3p14.1	PSMD6	rs9828933-T	NR	1E-7	(Japanese)	1.09155	[1.05659-1.12766]	Illumina [7521072] (imputed)	N
1073	chr3	64004818	64004819	rs2578011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p14.1		rs2578011-T	0.325361157	1E-17		0.08470366	[0.065-0.104] unit decrease	Illumina [13429769] (imputed)	N
1073	chr3	64004818	64004819	rs2578011	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3p14.1		rs2578011-T	NR	1E-20		0.0693	[0.055-0.084] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1073	chr3	64029382	64029383	rs831574	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Dihydroxy docosatrienoic acid)	1,260 African American individuals	NA	3p14.1	PSMD6	rs831574-A		8E-6		0.16	[0.09-0.23] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1073	chr3	64037784	64037785	rs11921666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p14.1		rs11921666-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1073	chr3	64038980	64038981	rs138930166	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	3p14.1	NR	rs138930166-?	NR	2E-6		0.1402	[0.082-0.198] unit decrease	Illumina [at least 560000] (imputed)	N
1073	chr3	64048296	64048297	rs831571	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	3p14.1	PSMD6	rs831571-c	0.61	8E-11		1.09	[1.06-1.12]	Affymetrix, Illumina [2626356] (imputed)	N
1073	chr3	64060127	64060128	rs1450985	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p14.1	NR	rs1450985-A	0.4155	6E-8	(EA)	0.035	[0.022-0.048] unit increase	Illumina [~ 11800000] (imputed)	N
1073	chr3	64060933	64060934	rs80336398	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	3p14.1	NR	rs80336398-C		3E-6		0.4001	[0.23-0.57] SD units decrease	NR [10700000] (imputed)	N
1073	chr3	64078008	64078009	rs153734	19303062	Tanaka T	2009-03-18	Am J Hum Genet	Genome-wide association study of vitamin B6, vitamin B12, folate, and homocysteine blood concentrations.	Folate pathway vitamin levels	2,934 European ancestry individuals	686 European ancestry individuals	3p14.1	PRICKLE2	rs153734-T	0.84	7E-6	(folate)	0.29	[0.13-0.45] ng/ml increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1074	chr3	64094823	64094824	rs7628583	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	3p14.1	NR	rs7628583-?	NR	7E-6		0.00502	[0.0028-0.0072] unit increase	Affymetrix [9658292] (imputed)	N
1074	chr3	64110134	64110135	rs1069977	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	3p14.1	NR	rs1069977-?	NR	9E-6		0.107859	[0.06-0.156] unit decrease	NR [13958389] (imputed)	N
1074	chr3	64116040	64116041	rs161660	33907183	Guo S	2021-04-27	Transl Psychiatry	Genome wide association study identifies four loci for early onset schizophrenia.	Early-onset schizophrenia	1,256 Han Chinese ancestry cases, 2,661 Han Chinese ancestry controls	903 Han Chinese ancestry cases, 3,900 Han Chinese ancestry controls	3p14.1	NR	rs161660-G	NR	7E-6		1.2303	[NR]	Illumina [4867007] (imputed)	N
1074	chr3	64140684	64140685	rs11130959	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 63)	19,670 European ancestry individuals	NA	3p14.1		rs11130959-?	NR	1E-8				NR [9705931] (imputed)	N
1074	chr3	64149166	64149167	rs27387	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3p14.1	PRICKLE2, PSMD6, ADAMTS9	rs27387-A	0.021	1E-6		4.44	[2.29-8.59]	Illumina [1556551]	N
1074	chr3	64173900	64173901	rs1035275	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p14.1	NR	rs1035275-C	0.444727228304406	9E-6	(IGP8)	0.1416	[0.079-0.204] unit decrease	Illumina [~ 2500000] (imputed)	N
1074	chr3	64193561	64193562	rs696021	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.1	NR	rs696021-?	NR	7E-7				Affymetrix [NR]	N
1074	chr3	64201701	64201702	rs888405	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in premature rupture of membrane-initiated deliveries (child effect)	225 Norwegian ancestry children	NA	3p14.1	NR	rs888405-A		8E-6				NR [525577]	N
1075	chr3	64234306	64234307	rs221988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p14.1	NR	rs221988-C	0.384	2E-10		0.00712105	[0.0049-0.0093] unit decrease	NR [9732723] (imputed)	N
1075	chr3	64234306	64234307	rs221988	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p14.1	NR	rs221988-C	0.384	1E-8		0.014865023	[0.0097-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1075	chr3	64244117	64244118	rs864089	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	3p14.1	PRICKLE2	rs864089-?		1E-6	(Dominant)	1.6666665	[1.25-2]	Illumina [5600610] (imputed)	N
1075	chr3	64252423	64252424	rs704417	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	3p14.1	PRICKLE2	rs704417-?	NR	4E-6				Illumina [9008729] (imputed)	N
1075	chr3	64285501	64285502	rs853286	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs853286-T	0.8921	4E-8		0.0124	[0.0079-0.0169] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1075	chr3	64292636	64292637	rs741013	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3p14.1	PRICKLE2	rs741013-A	0.98	5E-7	(AA)	0.97	[0.6-1.34] unit decrease	Affymetrix, Illumina [up to 2727966] (imputed)	N
1075	chr3	64340526	64340527	rs17070488	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	prednisolone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	3p14.1	PRICKLE2	rs17070488-G	0.433	2E-6				Illumina [331281]	N
1076	chr3	64428491	64428492	rs930530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs930530-T	0.5016	2E-10	(conditional-joint)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1076	chr3	64430550	64430551	rs62247449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p14.1		rs62247449-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1076	chr3	64430550	64430551	rs62247449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs62247449-C	0.4357	9E-16		0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1076	chr3	64430550	64430551	rs62247449	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.1	Intergenic	rs62247449-C	0.4357	2E-15	(MTAG)	0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1076	chr3	64431729	64431730	rs6803651	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p14.1		rs6803651-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1076	chr3	64434480	64434481	rs59110590	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.1		rs59110590-G	0.42	3E-15		7.88	z score increase	Affymetrix [9061022] (imputed)	N
1076	chr3	64446111	64446112	rs9841975	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p14.1	NR	rs9841975-A	0.439364	8E-10		0.04343015	[0.03-0.057] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1076	chr3	64460693	64460694	rs74368513	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p14.1	PSMD6	rs74368513-G	0.9956	7E-6		1.31	[1.16-1.47]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1077	chr3	64526566	64526567	rs9866261	26620591	Barreto-Luis A	2015-11-24	J Allergy Clin Immunol	Genome-wide association study in Spanish identifies ADAM metallopeptidase with thrombospondin type 1 motif, 9 (ADAMTS9), as a novel asthma susceptibility gene.	Asthma	352 European ancestry cases, 537 European ancestry controls	828 European ancestry cases, 1,378 European ancestry controls	3p14.1	ADAMTS9	rs9866261-G	0.125	1E-7		1.45	[1.26-1.66]	Affymetrix [6467565] (imputed)	N
1077	chr3	64536647	64536648	rs80311637	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	3p14.1	ADAMTS9	rs80311637-A	0.029	2E-6		0.078	[0.047-0.109] unit increase	Illumina [747076]	N
1077	chr3	64536647	64536648	rs80311637	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (alanine transaminase)	484 Korean ancestry children	NA	3p14.1	ADAMTS9	rs80311637-A	0.029	7E-6		0.137	[0.078-0.196] unit increase	Illumina [747076]	N
1077	chr3	64547476	64547477	rs35667547	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p14.1	THOC7, ATXN7, ADAMTS9, MAGI1, LRIG1, KBTBD8	rs35667547-?		5E-11				Affymetrix, Illumina [NR] (imputed)	N
1077	chr3	64547476	64547477	rs35667547	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3p14.1	ADAMTS9-AS1	rs35667547-?	NR	1E-9		0.61	[0.41-0.81] unit decrease	Affymetrix [11100000] (imputed)	N
1077	chr3	64567781	64567782	rs13088399	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	SDCCAG8, AKT3	rs13088399-?		9E-11				NR [7428630] (imputed)	N
1077	chr3	64570687	64570688	rs4530517	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	ADAMTS9	rs4530517-?		2E-11				NR [7428630] (imputed)	N
1077	chr3	64584861	64584862	rs11718560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs11718560-T	NR	2E-11		0.021481	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1077	chr3	64584861	64584862	rs11718560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs11718560-T	NR	2E-11		0.021313	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1077	chr3	64584861	64584862	rs11718560	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs11718560-T	NR	8E-9		0.0186121	[0.012-0.025] unit increase	Affymetrix [321169] (imputed)	N
1077	chr3	64584861	64584862	rs11718560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p14.1		rs11718560-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1077	chr3	64588354	64588355	rs11720408	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs11720408-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1077	chr3	64597346	64597347	rs7432600	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.1		rs7432600-C	0.46	3E-24		10.18	z score increase	Affymetrix [9061022] (imputed)	N
1077	chr3	64597346	64597347	rs7432600	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.1	NR	rs7432600-C	0.4262	1E-17				NR [9056863] (imputed)	N
1077	chr3	64608665	64608666	rs6782866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs6782866-G	NR	6E-9		0.0185054	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1077	chr3	64611331	64611332	rs6768530	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p14.1		rs6768530-?	NR	3E-12				NR [9705931] (imputed)	N
1077	chr3	64613443	64613444	rs6445419	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.1		rs6445419-G	0.45	3E-45		14.12	z score increase	Affymetrix [9061022] (imputed)	N
1077	chr3	64614822	64614823	rs11707060	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.1	NR	rs11707060-C	0.4255	2E-15				NR [9056863] (imputed)	N
1078	chr3	64631273	64631274	rs58297050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs58297050-C	NR	6E-10		0.0191014	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64631273	64631274	rs58297050	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs58297050-C	NR	8E-10		0.0189494	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64652329	64652329	rs769072678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs769072678-AT	NR	4E-13		0.0206056	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64652329	64652329	rs769072678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs769072678-AT	NR	4E-13		0.0206914	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64652329	64652329	rs769072678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs769072678-AT	NR	1E-8		0.0163519	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64652329	64652329	rs769072678	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs769072678-AT	NR	5E-9		0.0168368	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64653745	64653746	rs4579012	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs4579012-?	NR	9E-10				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64670231	64670232	rs116703588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs116703588-T	NR	4E-9		0.0625122	[0.042-0.083] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64670231	64670232	rs116703588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9	rs116703588-T	NR	3E-9		0.0626167	[0.042-0.083] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64670231	64670232	rs116703588	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs116703588-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64674271	64674272	rs4468968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4468968-A	NR	3E-18		0.0266366	[0.021-0.033] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64674271	64674272	rs4468968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4468968-A	NR	4E-18		0.0265	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64674271	64674272	rs4468968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4468968-A	NR	6E-10		0.0190235	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1078	chr3	64674271	64674272	rs4468968	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4468968-A	NR	2E-12		0.0217634	[0.016-0.028] unit increase	Affymetrix [321169] (imputed)	N
1078	chr3	64680588	64680589	rs4074629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4074629-A	NR	2E-30		0.0325067	[0.027-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64680588	64680589	rs4074629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4074629-A	NR	8E-31		0.0327783	[0.027-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64680588	64680589	rs4074629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4074629-A	NR	7E-19		0.0254376	[0.02-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64680588	64680589	rs4074629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4074629-A	NR	6E-23		0.0283174	[0.023-0.034] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64681209	64681210	rs4688502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688502-T	NR	4E-21		0.0284611	[0.023-0.034] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64681209	64681210	rs4688502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688502-T	NR	2E-21		0.0287183	[0.023-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64681209	64681210	rs4688502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688502-T	NR	5E-15		0.0237786	[0.018-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64681209	64681210	rs4688502	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688502-T	NR	8E-16		0.0245577	[0.019-0.031] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64681766	64681767	rs11130981	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs11130981-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64684682	64684683	rs13084009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs13084009-G	NR	1E-9		0.0215323	[0.015-0.028] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64684682	64684683	rs13084009	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs13084009-G	NR	2E-9		0.0213557	[0.014-0.028] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64684918	64684919	rs28546794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs28546794-A	NR	6E-11		0.0327833	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64684918	64684919	rs28546794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs28546794-A	NR	5E-11		0.0329079	[0.023-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64684940	64684941	rs4688504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688504-T	NR	8E-15		0.0218973	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64684940	64684941	rs4688504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688504-T	NR	5E-15		0.0220661	[0.017-0.028] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64684940	64684941	rs4688504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688504-T	NR	8E-11		0.0184893	[0.013-0.024] unit increase	Affymetrix [321114] (imputed)	N
1078	chr3	64684940	64684941	rs4688504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688504-T	NR	9E-12		0.0194312	[0.014-0.025] unit increase	Affymetrix [321169] (imputed)	N
1078	chr3	64684940	64684941	rs4688504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs4688504-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64687357	64687358	rs114327865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114327865-G	NR	9E-13		0.0594256	[0.043-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64687357	64687358	rs114327865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114327865-G	NR	5E-13		0.0601787	[0.044-0.076] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64687357	64687358	rs114327865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114327865-G	NR	3E-9		0.0499478	[0.034-0.066] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64687357	64687358	rs114327865	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114327865-G	NR	2E-11		0.0563107	[0.04-0.073] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs77815064-A	NR	9E-28		0.0437273	[0.036-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs77815064-A	NR	5E-28		0.0439353	[0.036-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs77815064-A	NR	3E-20		0.0372606	[0.029-0.045] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs77815064-A	NR	6E-22		0.0389611	[0.031-0.047] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs77815064-?	NR	2E-25				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64688756	64688757	rs77815064	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.1	NR	rs77815064-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64690101	64690101	rs113925880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs113925880-AAAAAC	NR	2E-10		0.0425302	[0.029-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64690101	64690101	rs113925880	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs113925880-AAAAAC	NR	2E-10		0.0424959	[0.029-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64693735	64693736	rs114306866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs114306866-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64695013	64695014	rs76329608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs76329608-G	NR	4E-16		0.0323133	[0.025-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64695013	64695014	rs76329608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs76329608-G	NR	2E-16		0.0326323	[0.025-0.04] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64695013	64695014	rs76329608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs76329608-G	NR	8E-12		0.0274658	[0.02-0.035] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64695013	64695014	rs76329608	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs76329608-G	NR	9E-14		0.0299811	[0.022-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64695625	64695626	rs80028515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs80028515-T	NR	8E-9		0.0513237	[0.034-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64695625	64695626	rs80028515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs80028515-T	NR	2E-8		0.0503602	[0.033-0.068] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64695625	64695626	rs80028515	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs80028515-T	NR	3E-9		0.0531899	[0.036-0.071] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs72877579-T	NR	8E-20		0.0464002	[0.036-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs72877579-T	NR	7E-19		0.0452081	[0.035-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs72877579-T	NR	5E-13		0.0371282	[0.027-0.047] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs72877579-T	NR	2E-14		0.0395166	[0.029-0.05] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs72877579-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64697470	64697471	rs72877579	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.1	NR	rs72877579-?	NR	7E-12				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64698385	64698386	rs116643532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs116643532-A	NR	3E-8		0.0509994	[0.033-0.069] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64698712	64698713	rs567715647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs567715647-C	NR	2E-24		0.0597924	[0.048-0.071] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64698712	64698713	rs567715647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs567715647-C	NR	2E-23		0.0585682	[0.047-0.07] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64698712	64698713	rs567715647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs567715647-C	NR	7E-19		0.0524736	[0.041-0.064] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64698712	64698713	rs567715647	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs567715647-C	NR	6E-18		0.051199	[0.04-0.063] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	2E-38		0.0488574	[0.041-0.056] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	8E-39		0.0491806	[0.042-0.057] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	1E-19		0.034506	[0.027-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	1E-13		0.0289669	[0.021-0.037] unit increase	Affymetrix [321788] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	8E-13		0.0269731	[0.02-0.034] unit increase	Affymetrix [321016] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	NR	4E-24		0.0386888	[0.031-0.046] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64698713	64698714	rs4490355	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs4490355-C	0.188487	9E-6		0.210668	[0.12-0.3] unit decrease	NR [7263501] (imputed)	N
1078	chr3	64699444	64699445	rs4611812	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p14.1	ADAMTS9	rs4611812-C	NR	3E-7	(female)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1078	chr3	64699444	64699445	rs4611812	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p14.1	ADAMTS9	rs4611812-C	NR	1E-6	(men)	1.08	[1.05-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p14.1	ADAMTS9	rs9860730-A	0.7036	5E-15		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs9860730-A	0.6495	2E-9	(women)	0.0321	[0.022-0.043] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs9860730-A	0.6495	1E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs9860730-A	0.6495	5E-13	(women)	0.0344	[0.025-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p14.1	NR	rs9860730-A	0.703136389587407	4E-22				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	NR	rs9860730-A	0.703136389587407	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs9860730-A	0.7028	4E-18	(EA, women)	0.0419	[0.032-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs9860730-A	0.7028	3E-10	(EA)	0.0229	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs9860730-A	0.7026	8E-17	(EA,women)	0.0396	[0.03-0.049] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64701145	64701146	rs9860730	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs9860730-A	0.7026	2E-9	(EA)	0.0219	[0.015-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64701534	64701535	rs76699125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs76699125-?	NR	1E-23				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64701534	64701535	rs76699125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.1	NR	rs76699125-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64701534	64701535	rs76699125	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p14.1	NA	rs76699125-T	0.9368	5E-15		0.032	[0.024-0.04] unit increase	NR [~ 27400000] (imputed)	N
1078	chr3	64701889	64701890	rs4504165	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs4504165-T	0.6995	7E-17	(EA)	0.0361	[0.028-0.045] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64701889	64701890	rs4504165	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 18,865 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,309 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3p14.1	ADAMTS9	rs4504165-T	0.7031	2E-6	(EA)	0.0422	[0.025-0.06] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64701889	64701890	rs4504165	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs4504165-?	0.6995	3E-17	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64701889	64701890	rs4504165	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	NR	rs4504165-T	0.703113195665242	8E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64701889	64701890	rs4504165	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	NR	rs4504165-T	0.703113195665242	5E-18		0.032882467	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs4616635-G	0.2664	2E-12				Affymetrix, Illumina [2331072] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3p14.1	ADAMTS9, ADAMTS9 -AS2, MIR548A2, PRICKLE2	rs4616635-C	0.7205	6E-21				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	ADAMTS9	rs4616635-C	0.72	8E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	3p14.1	ADAMTS9, ADAMTS9-AS2, MIR548A2, PRICKLE2	rs4616635-C	0.720489738488708	2E-15	(women)	0.0503	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age <50)	up to 43,776 European ancestry men, up to 50,526 European ancestry women	NA	3p14.1	ADAMTS9, ADAMTS9-AS2, MIR548A2, PRICKLE2	rs4616635-C	0.72	3E-9	(women)	0.048	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64702274	64702275	rs4616635	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	ADAMTS9, MIR548A2, PRICKLE2, ADAMTS9-AS2	rs4616635-C	0.72049	1E-16		0.0503	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64703393	64703394	rs66815886	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p14.1	NR	rs66815886-G	0.6877	1E-21		0.04	[0.032-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1078	chr3	64703393	64703394	rs66815886	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p14.1		rs66815886-?	NR	2E-76				NR [~ 8900000] (imputed)	N
1078	chr3	64703393	64703394	rs66815886	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	3p14.1	ADAMTS9-AS2	rs66815886-G	0.456	9E-27		0.064	[0.044-0.084] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1078	chr3	64703393	64703394	rs66815886	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	3p14.1	ADAMTS9-AS2	rs66815886-G	0.456	2E-11	(AA)	0.064	[0.044-0.084] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1078	chr3	64703393	64703394	rs66815886	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Waist-to-hip ratio adjusted for body mass index	4,783 African American men, 15,601 African American women	981 African American men, 1,730 African American women, 104,079 European ancestry men, 116,742 European ancestry women	3p14.1	ADAMTS9-AS2	rs66815886-G	0.455	3E-12	(AA, Women)	0.078	[0.056-0.1] unit increase	Affymetrix, Illumina [20502658] (imputed)	N
1078	chr3	64703664	64703665	rs4411878	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3p14.1	ADAMTS9-AS2, MIR548A2	rs4411878-T	0.2576	6E-6		0.0287	[0.016-0.041] unit increase	NR [8041861] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p14.1		rs6795735-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3p14.1	ADAMTS9-AS2	rs6795735-T	0.410911492715474	2E-14		0.0558	[0.041-0.07] unit decrease	NR [5035015] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs6795735-C		3E-8	(EA)	0.329	unit increase	Affymetrix [at least 2696785] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p14.1	ADAMTS9, AS2	rs6795735-C		5E-7		0.274	unit increase	Affymetrix [at least 2696785] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs6795735-C		4E-6	(EA)	0.177	unit increase	Affymetrix [at least 2696785] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs6795735-C		1E-11		0.159	unit increase	Affymetrix [at least 2696785] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	3p14.1	ADAMTS9	rs6795735-T	0.46	5E-9		1.1	[1.07-1.14]	Affymetrix, Illumina [2442884] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3p14.1	ADAMTS9	rs6795735-C	0.589987598823279	7E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1078	chr3	64705364	64705365	rs6795735	20935629	Heid IM	2010-10-10	Nat Genet	Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.	Waist-hip ratio	Up to 77,167 European ancestry individuals	Up to 113,636 European ancestry individuals	3p14.1	ADAMTS9	rs6795735-C	0.59	1E-13		0.03	[NR] unit increase	Affymetrix, Illumina, Perlegen [up to 2850269] (imputed)	N
1078	chr3	64706498	64706499	rs9870322	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3p14.1	ADAMTS9-AS2	rs9870322-T	0.5997	4E-8		0.0141	[0.009-0.0192] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1078	chr3	64708113	64708114	rs4132228	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Percent mammographic density	24,192 European ancestry individuals	NA	3p14.1		rs4132228-?	NR	1E-7		0.041	[0.025-0.057] unit increase	Affymetrix [9906178] (imputed)	N
1078	chr3	64708113	64708114	rs4132228	33037222	Sieh W	2020-10-09	Nat Commun	Identification of 31 loci for mammographic density phenotypes and their associations with breast cancer risk.	Mammographic density (non-dense area)	24,192 European ancestry individuals	NA	3p14.1		rs4132228-?	NR	2E-13		0.048	[0.034-0.062] unit decrease	Affymetrix [9906178] (imputed)	N
1078	chr3	64708113	64708114	rs4132228	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p14.1	NR	rs4132228-C	0.7026	6E-21		0.0471	[0.037-0.057] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1078	chr3	64708113	64708114	rs4132228	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs4132228-T	0.2903	3E-8	(EA)	0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64708113	64708114	rs4132228	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs4132228-T	0.2903	2E-6	(EA, men)	0.0255	[0.015-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64710252	64710253	rs918466	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3p14.1	ADAMTS9	rs918466-A	0.406	2E-11		0.1819	[0.13-0.23] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1078	chr3	64711903	64711904	rs4607103	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	3p14.1	ADAMTS9	rs4607103-C	NR	1E-7		1.1014197		Affymetrix, Illumina [~ 13000000] (imputed)	N
1078	chr3	64711903	64711904	rs4607103	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3p14.1	intergenic	rs4607103-T	0.2326	2E-8	(EA)	0.0648	[0.042-0.088] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1078	chr3	64711903	64711904	rs4607103	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3p14.1	ADAMTS9	rs4607103-C	0.76	1E-8		1.09	[1.06-1.12]	Affymetrix, Illumina [2202892] (imputed)	N
1078	chr3	64712943	64712944	rs1862304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1862304-A	NR	4E-8		0.049387	[0.032-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	2E-27		0.0515787	[0.042-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	7E-28		0.0519493	[0.043-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	2E-15		0.0380496	[0.029-0.047] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	2E-9		0.0297713	[0.02-0.039] unit increase	Affymetrix [321788] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	2E-8		0.0265959	[0.017-0.036] unit increase	Affymetrix [321016] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7372321-T	NR	2E-18		0.0419517	[0.033-0.051] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs7372321-?	NR	5E-22				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p14.1	NR	rs7372321-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p14.1	NR	rs7372321-T	0.0999	9E-26		0.0314	[0.026-0.037] unit decrease	NR [~ 27400000] (imputed)	N
1078	chr3	64713814	64713815	rs7372321	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3p14.1	NR	rs7372321-T	0.0999	2E-13		0.0217	[0.016-0.028] unit decrease	NR [~ 27400000] (imputed)	N
1078	chr3	64715154	64715155	rs62247658	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	3p14.1	ADAMTS9-AS2, MIR548A2	rs62247658-?	NR	2E-14	(EA)	1.14		Illumina [12023830] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	1E-26		0.0320545	[0.026-0.038] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	4E-27		0.0323343	[0.026-0.038] unit increase	Affymetrix [319769] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	2E-15		0.0239896	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	4E-8		0.0171844	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	4E-8		0.0165102	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1078	chr3	64715466	64715467	rs17676096	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs17676096-A	NR	9E-19		0.0268407	[0.021-0.033] unit increase	Affymetrix [321169] (imputed)	N
1078	chr3	64717574	64717575	rs6445424	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p14.1	ADAMTS9-AS2	rs6445424-A	0.237621	9E-11		0.016830407	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	9E-85		0.0616541	[0.055-0.068] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	2E-84		0.0615943	[0.055-0.068] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	3E-49		0.0470601	[0.041-0.053] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	6E-23		0.0323621	[0.026-0.039] unit increase	Affymetrix [321788] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	8E-14		0.026781	[0.02-0.034] unit increase	Affymetrix [323858] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	8E-22		0.0302923	[0.024-0.036] unit increase	Affymetrix [321016] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	2E-12		0.0241544	[0.017-0.031] unit increase	Affymetrix [323123] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs2371767-C	NR	3E-56		0.0505183	[0.044-0.057] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p14.1		rs2371767-C	0.27	3E-16				NR [NR] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p14.1		rs2371767-C	0.27	2E-12		0.012	% increase	NR [NR] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	9,140 African American females, 11,555 Hispanic/Latino females, 1,843 Asian ancestry females, 1,715 Native Hawaiian ancestry females, 585 Native American ancestry females	NA	3p14.1	NR	rs2371767-?	NR	1E-11		0.06214778	[0.044-0.08] unit decrease	Illumina [30305130] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Waist-hip ratio	10,286 African American individuals, 16,472 Hispanic/Latino individuals, 3,500 Asian ancestry individuals, 3,061 Native Hawaiian ancestry individuals, 585 Native American ancestry individuals	NA	3p14.1	NR	rs2371767-?	NR	1E-7		0.04322555	[0.027-0.059] unit decrease	Illumina [at least 21894105] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p14.1	NR	rs2371767-G	0.74	6E-92		0.04	[0.036-0.044] unit increase	Affymetrix [2446094] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p14.1	NR	rs2371767-G	0.74	5E-8				Affymetrix [2446094] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p14.1	NR	rs2371767-G	NR	3E-8		0.016	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs2371767-G	0.7188	3E-22	(EA, women)	0.0558	[0.044-0.067] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.1	ADAMTS9	rs2371767-G	0.7191000000000001	3E-21	(EA, women)	0.0617	[0.049-0.074] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.1	ADAMTS9	rs2371767-G	0.7188	3E-14	(EA)	0.0384	[0.029-0.048] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs2371767-?	0.7188	1E-22	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in smokers	18,972 European ancestry women, 16,109 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	5E-6	(women)	0.0307	[0.018-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	5E-12	(women)	0.0256	[0.018-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI in non-smokers	75,379 European ancestry women, 45,811 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	1E-10		0.0203	[0.014-0.026] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	6E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (joint analysis main effects and smoking interaction)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	1E-15	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	5E-18		0.035	[0.027-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p14.1	ADAMTS9	rs2371767-C	0.3027	1E-22	(women)	0.0515	[0.041-0.062] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3p14.1	NR	rs2371767-C	0.278562748580316	1E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.1	MIR548AN	rs2371767-C	0.288	2E-7		0.018	[0.011-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1078	chr3	64718257	64718258	rs2371767	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p14.1	MIR548AN	rs2371767-C	0.275	5E-7	(EA)	0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1078	chr3	64718257	64718258	rs2371767	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs2371767-G	0.7247	2E-20	(EA)	0.0363	[0.029-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs2371767-G	0.7235	1E-26	(EA, women)	0.0555	[0.045-0.066] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs2371767-G	0.7073	1E-22		0.0374	[0.03-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p14.1	ADAMTS9	rs2371767-G	0.7065	2E-29	(women)	0.057	[0.047-0.067] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1078	chr3	64718257	64718258	rs2371767	23754948	Randall JC	2013-06-06	PLoS Genet	Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.	Sexual dimorphism in anthropometric traits	up to 60,586 European ancestry males, up to 73,137 European ancestry females	up to 62,395 European ancestry males, up to 74,657 European ancestry females	3p14.1	ADAMTS9, ADAMTS9-AS2, MIR548AN	rs2371767-G		2E-6	(WHRadjBMI, women)			Affymetrix, Illumina [2846694] (imputed)	N
1078	chr3	64719090	64719091	rs6445425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p14.1		rs6445425-C	NR	2E-8		0.011	[0.0071-0.0149] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1078	chr3	64719090	64719091	rs6445425	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs6445425-C	NR	2E-16		0.0244221	[0.019-0.03] unit increase	Affymetrix [321788] (imputed)	N
1078	chr3	64723071	64723072	rs7638565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7638565-A	NR	1E-54		0.0447389	[0.039-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64723071	64723072	rs7638565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7638565-A	NR	1E-54		0.0447741	[0.039-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64723071	64723072	rs7638565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7638565-A	NR	1E-28		0.0322764	[0.027-0.038] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64723071	64723072	rs7638565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7638565-A	NR	1E-17		0.0245196	[0.019-0.03] unit increase	Affymetrix [321016] (imputed)	N
1078	chr3	64723071	64723072	rs7638565	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs7638565-A	NR	1E-35		0.0362711	[0.031-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1078	chr3	64724552	64724553	rs9834510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834510-C	NR	4E-11		0.0472649	[0.033-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64724552	64724553	rs9834510	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834510-C	NR	2E-11		0.0477037	[0.034-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64727085	64727086	rs7433808	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p14.1	ADAMTS9	rs7433808-A	0.74	2E-7	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1078	chr3	64727085	64727086	rs7433808	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p14.1	ADAMTS9	rs7433808-A	0.74	2E-7	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1078	chr3	64728311	64728312	rs11130982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p14.1		rs11130982-G	NR	2E-10		0.0163	[0.011-0.021] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1078	chr3	64728311	64728312	rs11130982	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p14.1	NR	rs11130982-T	0.292996	4E-11		0.00873982	[0.0061-0.0114] unit increase	Affymetrix [16585854] (imputed)	N
1078	chr3	64728311	64728312	rs11130982	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p14.1	NR	rs11130982-T	0.292996	5E-6		0.00690833	[0.0038-0.01] unit increase	Affymetrix [16585866] (imputed)	N
1078	chr3	64729891	64729892	rs7638389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs7638389-A	0.7481	6E-13	(EA, women)	0.0407	[0.03-0.052] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64729891	64729892	rs7638389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p14.1	ADAMTS9	rs7638389-A	0.7478	3E-11	(EA,women)	0.0422	[0.03-0.055] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64729891	64729892	rs7638389	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p14.1	ADAMTS9	rs7638389-?	0.7481	2E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1078	chr3	64729891	64729892	rs7638389	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p14.1	ADAMTS9	rs7638389-A	0.74	8E-6	(Women)			Affymetrix, Illumina [2500000] (imputed)	N
1078	chr3	64730120	64730121	rs17676309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3p14.1	ADAMTS9-AS2	rs17676309-T	NR	2E-10		0.0209606	[0.015-0.027] unit increase	Affymetrix [323858] (imputed)	N
1078	chr3	64730120	64730121	rs17676309	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p14.1	ADAMTS9-AS2	rs17676309-T	NR	1E-9		0.0189677	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
1078	chr3	64733406	64733407	rs9834369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834369-G	NR	2E-16		0.0232588	[0.018-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64733406	64733407	rs9834369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834369-G	NR	1E-15		0.0227772	[0.017-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1078	chr3	64733406	64733407	rs9834369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834369-G	NR	8E-10		0.0175799	[0.012-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1078	chr3	64733406	64733407	rs9834369	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9834369-G	NR	7E-10		0.0176827	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1079	chr3	64749670	64749671	rs111558778	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	3p14.1	ADAMTS9	rs111558778-G	0.986	8E-7		2.7777777	[1.85-4.17]	Affymetrix, Illumina [12148595] (imputed)	N
1079	chr3	64751448	64751449	rs114483957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114483957-A	NR	1E-8		0.0444435	[0.029-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64751448	64751449	rs114483957	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs114483957-A	NR	1E-8		0.0448514	[0.03-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64760834	64760835	rs318735	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs318735-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1079	chr3	64776932	64776933	rs318770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs318770-A	NR	4E-20		0.0263174	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1079	chr3	64776932	64776933	rs318770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs318770-A	NR	6E-20		0.0261811	[0.021-0.032] unit increase	Affymetrix [319769] (imputed)	N
1079	chr3	64776932	64776933	rs318770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs318770-A	NR	4E-12		0.0199945	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1079	chr3	64776932	64776933	rs318770	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs318770-A	NR	2E-12		0.0203581	[0.015-0.026] unit increase	Affymetrix [321169] (imputed)	N
1079	chr3	64793540	64793541	rs384441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs384441-A	NR	4E-9		0.0166241	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64793540	64793541	rs384441	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs384441-A	NR	7E-9		0.0163092	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64798872	64798873	rs9830405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p14.1		rs9830405-G	NR	8E-40		0.0282	[0.024-0.032] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1079	chr3	64801186	64801187	rs998394	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs998394-A	0.4015	5E-36		0.0095	[0.0079-0.0111] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1079	chr3	64801186	64801187	rs998394	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	3p14.1	ADAMTS9-AS2	rs998394-A	0.458	4E-7		0.058	[0.036-0.08] mmol/L decrease	Illumina [1990000] (imputed)	N
1079	chr3	64834826	64834827	rs877523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs877523-G	NR	6E-9		0.0165356	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64834826	64834827	rs877523	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs877523-G	NR	4E-9		0.0167494	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64835495	64835496	rs73119726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs73119726-T	NR	3E-16		0.0420354	[0.032-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64835495	64835496	rs73119726	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs73119726-T	NR	8E-17		0.0429345	[0.033-0.053] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64839736	64839737	rs704426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704426-C	NR	1E-19		0.0261407	[0.02-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64839736	64839737	rs704426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704426-C	NR	4E-20		0.0264562	[0.021-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64839736	64839737	rs704426	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704426-C	NR	2E-12		0.0205564	[0.015-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1079	chr3	64839736	64839737	rs704426	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs704426-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1079	chr3	64839894	64839895	rs704427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704427-C	NR	9E-10		0.0316931	[0.022-0.042] unit decrease	Affymetrix [321114] (imputed)	N
1079	chr3	64839894	64839895	rs704427	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704427-C	NR	2E-11		0.0350255	[0.025-0.045] unit decrease	Affymetrix [321169] (imputed)	N
1079	chr3	64849373	64849373	rs34475193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs34475193-TA	NR	1E-12		0.0207774	[0.015-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1079	chr3	64851142	64851143	rs112470832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs112470832-A	NR	2E-11		0.0382028	[0.027-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64851142	64851143	rs112470832	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs112470832-A	NR	1E-11		0.0387397	[0.028-0.05] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64854948	64854949	rs12630174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p14.1		rs12630174-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1079	chr3	64857302	64857303	rs704433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704433-A	NR	2E-8		0.0207714	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64857302	64857303	rs704433	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704433-A	NR	8E-9		0.0212174	[0.014-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1079	chr3	64878443	64878444	rs704442	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	3p14.1		rs704442-?	NR	3E-12				NR [9705931] (imputed)	N
1079	chr3	64879208	64879209	rs704443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704443-G	NR	1E-10		0.0182078	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
1079	chr3	64879208	64879209	rs704443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704443-G	NR	3E-10		0.0178116	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1079	chr3	64880376	64880377	rs704444	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704444-G	NR	2E-9		0.0169312	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
1079	chr3	64880376	64880377	rs704444	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p14.1	ADAMTS9-AS2	rs704444-A	NR	3E-8		5.572	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1080	chr3	64886109	64886110	rs1036797	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	3p14.1	ADAMTS9, MIR548A2, AS2	rs1036797-?	0.26	2E-6				Illumina [565404]	N
1080	chr3	64891098	64891099	rs704447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704447-G	NR	4E-14		0.0217644	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64891098	64891099	rs704447	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs704447-G	NR	1E-13		0.0213216	[0.016-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64891098	64891099	rs704447	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs704447-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1080	chr3	64898093	64898094	rs1442029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1442029-T	NR	2E-11		0.0227194	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64898093	64898094	rs1442029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1442029-T	NR	2E-11		0.0228317	[0.016-0.029] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64898093	64898094	rs1442029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1442029-T	NR	8E-9		0.0198145	[0.013-0.027] unit decrease	Affymetrix [321169] (imputed)	N
1080	chr3	64898093	64898094	rs1442029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p14.1	NR	rs1442029-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1080	chr3	64907374	64907375	rs6800340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs6800340-T	NR	4E-15		0.0327336	[0.025-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64907374	64907375	rs6800340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs6800340-T	NR	5E-15		0.032556	[0.024-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64907374	64907375	rs6800340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs6800340-T	NR	6E-10		0.0260252	[0.018-0.034] unit decrease	Affymetrix [321114] (imputed)	N
1080	chr3	64907374	64907375	rs6800340	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs6800340-T	NR	1E-11		0.0285465	[0.02-0.037] unit decrease	Affymetrix [321169] (imputed)	N
1080	chr3	64912150	64912151	rs10510921	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	3p14.1	ADAMTS9-AS2, MIR548A2	rs10510921-G	0.02	7E-6		3.52	[2.97-4.07]	Illumina [8809853] (imputed)	N
1080	chr3	64917701	64917702	rs73115620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs73115620-A	NR	5E-13		0.0376452	[0.027-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64917701	64917702	rs73115620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs73115620-A	NR	2E-13		0.038439	[0.028-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64917701	64917702	rs73115620	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs73115620-A	NR	9E-9		0.0303283	[0.02-0.041] unit decrease	Affymetrix [321169] (imputed)	N
1080	chr3	64924859	64924860	rs9815385	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3p14.1		rs9815385-A	NR	5E-10		0.0203	[0.014-0.027] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1080	chr3	64927024	64927025	rs704454	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	3p14.1	ADAMTS9	rs704454-?	NR	3E-6		0.5038	unit increase	Illumina [2543888] (imputed)	N
1080	chr3	64938529	64938530	rs55680296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs55680296-A	NR	3E-9		0.0241798	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64938529	64938530	rs55680296	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs55680296-A	NR	2E-9		0.0244565	[0.016-0.032] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64944032	64944033	rs4688219	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs4688219-C	NR	4E-8		0.0156582	[0.01-0.021] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64945870	64945871	rs2244503	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p14.1	NR	rs2244503-?	NR	7E-13				Illumina [at least 7383741] (imputed)	N
1080	chr3	64952909	64952910	rs1720543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1720543-T	NR	1E-9		0.0200931	[0.014-0.027] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64958063	64958064	rs12487786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs12487786-T	NR	1E-9		0.0200085	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64958160	64958161	rs1720525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1720525-C	NR	2E-8		0.0206898	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64958160	64958161	rs1720525	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs1720525-C	NR	3E-8		0.0205861	[0.013-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	64993762	64993763	rs2030217	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	3p14.1	NR	rs2030217-?	NR	2E-6		0.9116632	[0.88-0.95]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1080	chr3	65004204	65004205	rs17072075	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	3p14.1	NR	rs17072075-C	0.1286	6E-7		0.2235	[0.14-0.31] unit decrease	Illumina [10677593] (imputed)	N
1080	chr3	65004553	65004554	rs9854642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9854642-C	NR	2E-8		0.035675	[0.023-0.048] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	65004553	65004554	rs9854642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9854642-C	NR	1E-8		0.0362332	[0.024-0.049] unit decrease	Affymetrix [319769] (imputed)	N
1080	chr3	65004553	65004554	rs9854642	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3p14.1	ADAMTS9-AS2	rs9854642-C	NR	4E-8		0.0353412	[0.023-0.048] unit decrease	Affymetrix [321169] (imputed)	N
1081	chr3	65038538	65038539	rs7432993	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p14.1	NR	rs7432993-C	0.169936	8E-15		0.0317638	[0.024-0.04] unit increase	NR [19129689] (imputed)	N
1081	chr3	65055724	65055725	rs143346524	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponemataceae abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.1		rs143346524-C	0.0110831	6E-9		0.102372	[0.068-0.137] unit increase	Illumina [7980478] (imputed)	N
1081	chr3	65055724	65055725	rs143346524	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Treponema D abundance in stool	5,959 Finnish ancestry individuals	NA	3p14.1		rs143346524-C	0.0110831	2E-8		0.121854	[0.079-0.164] unit increase	Illumina [7980478] (imputed)	N
1081	chr3	65098301	65098302	rs11711517	33409738	Abdel-Wahab N	2021-01-07	Cancer Immunol Immunother	Genetic determinants of immune-related adverse events in patients with melanoma receiving immune checkpoint inhibitors.	Response to immune checkpoint inhibitors in melanoma (immune-related adverse events)	43 European ancestry cases, 1 case, 42 European ancestry controls, 1 African ancestry control, 2 controls	NA	3p14.1	LOC105377125	rs11711517-G	NR	2E-6		0.1632	[0.07279-0.3658]	Illumina [599931]	N
1081	chr3	65137328	65137329	rs1482588	32853455	Schwantes-An TH	2020-08-27	Hepatology	Genome-wide association study and meta-analysis on alcohol-related liver cirrhosis identifies novel genetic risk factors.	Cirrhosis (alcohol related)	1,128 European ancestry cases, 849 European ancestry heavy-drinking controls	up to 2,369 European ancestry cases, up to 10,434 European ancestry heavy-drinking controls	3p14.1	ADAMTS9-AS2, MAGI1	rs1482588-A	NR	2E-6		0.5164	[0.3-0.73] unit decrease	Illumina [9377111] (imputed)	N
1082	chr3	65153147	65153148	rs931234	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p14.1	NR	rs931234-?	NR	2E-7				Illumina [at least 7383741] (imputed)	N
1082	chr3	65155559	65155560	rs931235	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p14.1		rs931235-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1082	chr3	65161153	65161154	rs9852417	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p14.1	NR	rs9852417-A	NR	2E-8		5.622	z score decrease	Affymetrix [10847151] (imputed)	N
1082	chr3	65161153	65161154	rs9852417	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3p14.1	NR	rs9852417-C	NR	3E-8		0.0131	[0.0085-0.0177] unit increase	Affymetrix [10847151] (imputed)	N
1082	chr3	65161153	65161154	rs9852417	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	3p14.1	NR	rs9852417-A	0.401464	2E-8		5.58	z score decrease	NR [10847151] (imputed)	N
1082	chr3	65173883	65173884	rs6771469	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p14.1	NR	rs6771469-C	0.401779775023318	3E-8		0.005194742	[0.0034-0.007] unit decrease	NR [NR]	N
1082	chr3	65173883	65173884	rs6771469	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3p14.1	NR	rs6771469-C	0.401779775023318	4E-8		0.006340173	[0.0041-0.0086] unit decrease	NR [NR]	N
1082	chr3	65173883	65173884	rs6771469	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p14.1	NR	rs6771469-C	0.401779775023318	3E-8		0.008258692	[0.0053-0.0112] unit decrease	NR [NR]	N
1082	chr3	65173883	65173884	rs6771469	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3p14.1	NR	rs6771469-C	0.401779775023318	3E-8		0.00526855	[0.0034-0.0071] unit decrease	NR [NR]	N
1082	chr3	65184411	65184412	rs56309511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p14.1		rs56309511-G	NR	2E-8		0.0123	[0.008-0.0166] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1082	chr3	65216596	65216597	rs115088345	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.1	NR	rs115088345-T	0.04704	2E-9	(DDB1)	0.1091	NR unit increase	Illumina [1671387] (imputed)	N
1082	chr3	65268671	65268672	rs34844492	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p14.1	NR	rs34844492-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1083	chr3	65326881	65326882	rs6764388	23322567	Lopes MC	2013-01-15	Invest Ophthalmol Vis Sci	Identification of a candidate gene for astigmatism.	Corneal astigmatism	22,100 European ancestry individuals		3p14.1	NR	rs6764388-T		6E-6		0.046	[NR] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1083	chr3	65379293	65379294	rs1016553	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	3p14.1	MAGI1	rs1016553-A	0.058	6E-6	(n-6 PUFA)			Affymetrix [590000]	N
1083	chr3	65398897	65398898	rs7649739	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p14.1	NR	rs7649739-G	0.358836830440587	6E-6	(IGP57)	0.1501	[0.085-0.215] unit decrease	Illumina [~ 2500000] (imputed)	N
1084	chr3	65412746	65412747	rs34388743	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	3p14.1	NR	rs34388743-?	NR	9E-6		0.324	[0.17-0.47] unit increase	Illumina [at least 560000] (imputed)	N
1084	chr3	65445526	65445527	rs4405857	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p14.1	NR	rs4405857-G	NR	5E-8		0.0133	[0.0085-0.0181] unit decrease	Affymetrix [10847151] (imputed)	N
1084	chr3	65445526	65445527	rs4405857	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3p14.1	MAGI1	rs4405857-C	0.401596	1E-8		5.7	z score increase	NR [10847151] (imputed)	N
1084	chr3	65454922	65454923	rs1404549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs1404549-A	0.3278	2E-9		0.0089	[0.006-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1084	chr3	65454922	65454923	rs1404549	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.1	Intergenic	rs1404549-A	0.3278	6E-9	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1084	chr3	65482744	65482745	rs56841534	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs56841534-A	0.6359	3E-9	(conditional-joint)	0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1084	chr3	65486387	65486388	rs1524976	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	3p14.1	MAGI1	rs1524976-A		8E-6		8.0	[NR] ms increase	Illumina [> 930000]	N
1084	chr3	65507160	65507161	rs188500549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.1	MAGI1	rs188500549-A	1.0	1E-6	(AA)	0.573	unit increase	Illumina [NR] (imputed)	N
1084	chr3	65507807	65507808	rs10510939	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3p14.1	NR	rs10510939-C	0.37455700000000003	2E-8		0.0173999	[0.011-0.024] unit increase	Affymetrix [16577424] (imputed)	N
1085	chr3	65542855	65542856	rs35855737	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	3p14.1	NR	rs35855737-T	0.822	7E-7		0.022219252	[0.013-0.031] unit increase	Affymetrix [up to 6544775] (imputed)	N
1085	chr3	65542855	65542856	rs35855737	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	3p14.1	MAGI1	rs35855737-C	0.18	2E-8		0.04	[NR] unit decrease	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
1085	chr3	65545566	65545567	rs114381917	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	3p14.1	MAGI1	rs114381917-?	NR	2E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1085	chr3	65545566	65545567	rs114381917	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	3p14.1	MAGI1	rs114381917-?		2E-6	(EA)	0.507	[0.3-0.72] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1085	chr3	65584680	65584681	rs1524962	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p14.1	NR	rs1524962-T	0.248	7E-8		0.222646	[0.14-0.3] unit decrease	Illumina [~ 6600000] (imputed)	N
1085	chr3	65592162	65592163	rs6445487	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p14.1	Intergenic	rs6445487-A	0.2533	2E-8	(MTAG)	0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1085	chr3	65625664	65625664	rs557511691	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	3p14.1	MAGI1	rs557511691-C	0.67	1E-6		0.065	[0.04-0.09] unit increase	Affymetrix [9740198] (imputed)	N
1085	chr3	65636484	65636485	rs7633294	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	3p14.1	MAGI1	rs7633294-G	0.326	2E-12		1.2	1.09-1.32	Affymetrix [435183]	N
1085	chr3	65654479	65654480	rs12638072	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs12638072-A	0.2992	3E-12		0.0107	[0.0078-0.0136] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1086	chr3	65690975	65690975	rs59337986	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	3p14.1	MAGI1	rs59337986-?	NR	1E-8		1.977066	[1.56-2.5]	Illumina [13976150] (imputed)	N
1086	chr3	65692062	65692063	rs1499508	33491795	Timmer T	2021-01-25	Vox Sang	Genetic determinants of ferritin, haemoglobin levels and haemoglobin trajectories: results from Donor InSight.	Declining hemoglobin trajectory in blood donors	1,044 European ancestry cases, 783 European ancestry controls	NA	3p14.1	MAGI1	rs1499508-A	0.179	2E-6		1.6	[1.32-1.94]	Affymetrix [7435577] (imputed)	N
1086	chr3	65692373	65692374	rs17073533	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis in sarcoidosis	260 African American cases, 513 African American controls	NA	3p14.1	MAGI1	rs17073533-?	NR	8E-8		2.0	[1.56-2.56]	Illumina [13976150] (imputed)	N
1086	chr3	65711934	65711935	rs77554090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p14.1		rs77554090-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1086	chr3	65711934	65711935	rs77554090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p14.1	Intergenic	rs77554090-T	0.0708	2E-8	(MTAG)	0.0181	[0.012-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1086	chr3	65711934	65711935	rs77554090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs77554090-T	0.0731	7E-12		0.0186	[0.013-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1086	chr3	65711934	65711935	rs77554090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.1	Intergenic	rs77554090-T	0.0731	3E-12	(MTAG)	0.0177	[0.013-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1086	chr3	65760341	65760342	rs11924265	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	3p14.1	MAGI1	rs11924265-C	0.06	5E-7	(B2)	2.03	[1.52-2.73]	Illumina [539846]	N
1086	chr3	65760341	65760342	rs11924265	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	3p14.1	MAGI1	rs11924265-C	0.06	2E-8	(CDC stricturing)	2.27	[1.68-3.09]	Illumina [539846]	N
1086	chr3	65761317	65761318	rs264118	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Disease severity in uveal melanoma (TNM stage 3 or 4 vs TNM stage 1 or 2)	330 European ancestry stage 3 or 4 cases, 255 European ancestry stage 1 or 2 cases	NA	3p14.1		rs264118-C	0.12	9E-6		2.23		Illumina [10258281] (imputed)	N
1086	chr3	65763475	65763476	rs17073759	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.1	NR	rs17073759-?	NR	4E-11				Affymetrix [NR]	N
1086	chr3	65778950	65778951	rs73135034	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	3p14.1	NR	rs73135034-?	NR	3E-6		0.0341	[0.02-0.048] unit decrease	Illumina [~ 7800000] (imputed)	N
1086	chr3	65798142	65798143	rs145965284	28916551	Liu Y	2017-09-15	J Rheumatol	Genetic Determinants of Radiographic Knee Osteoarthritis in African Americans.	Knee osteoarthritis	742 African American cases, 475 African American controls	NA	3p14.1	MAGI1	rs145965284-A	0.27	3E-7		1.96	[1.51-2.54]	Illumina [8300000] (imputed)	N
1087	chr3	65837867	65837868	rs77700841	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3p14.1	MAGI1	rs77700841-C	0.086	4E-16		0.34	[0.26-0.42] unit decrease	Affymetrix [339439]	N
1087	chr3	65850670	65850671	rs112730634	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3p14.1	MAGI1	rs112730634-T	NR	2E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1087	chr3	65850670	65850671	rs112730634	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3p14.1	MAGI1	rs112730634-T	NR	2E-6				Illumina [up to 11995908] (imputed)	N
1088	chr3	65958584	65958585	rs17074200	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	3p14.1	NR	rs17074200-?	NR	7E-7			[NR]	Illumina [5432814] (imputed)	N
1088	chr3	65972903	65972904	rs6807782	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p14.1	Intergenic	rs6807782-T	0.3066	2E-8	(MTAG)	0.0109	[0.0072-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1088	chr3	65993103	65993104	rs6445525	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	3p14.1	MAGI1	rs6445525-?	NR	9E-6		0.618	[0.23-1] unit decrease	Illumina [at least 13000000] (imputed)	N
1088	chr3	66009528	66009529	rs115903965	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p14.1	MAGI1	rs115903965-G	0.975613	2E-8		0.0255086	[0.017-0.034] unit decrease	Affymetrix [12370749]	N
1088	chr3	66041381	66041382	rs56127631	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	3p14.1		rs56127631-T	0.28	1E-8				NR [13131314] (imputed)	N
1088	chr3	66041381	66041382	rs56127631	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	3p14.1		rs56127631-T	0.28	7E-9				Affymetrix [9061022] (imputed)	N
1088	chr3	66041381	66041382	rs56127631	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.1		rs56127631-T	0.28	6E-107		21.97	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr3	66041381	66041382	rs56127631	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.1		rs56127631-T	0.28	1E-19		9.08	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr3	66042246	66042247	rs28848789	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.1		rs28848789-C	0.28	3E-41		13.44	z score increase	Affymetrix [9061022] (imputed)	N
1088	chr3	66042246	66042247	rs28848789	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.1	NR	rs28848789-C	0.3062	1E-17				NR [9056863] (imputed)	N
1088	chr3	66043101	66043102	rs28472955	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p14.1		rs28472955-?	NR	9E-23				NR [9705931] (imputed)	N
1088	chr3	66043101	66043102	rs28472955	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	KIF26B	rs28472955-?		4E-11				NR [7428630] (imputed)	N
1088	chr3	66043101	66043102	rs28472955	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p14.1	MAGI1	rs28472955-?		7E-12				NR [7428630] (imputed)	N
1088	chr3	66048911	66048912	rs28635932	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.1	NR	rs28635932-C	0.305	1E-17				NR [9056863] (imputed)	N
1088	chr3	66059245	66059246	rs116791075	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3p14.1	NR	rs116791075-A	0.069	2E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1089	chr3	66075970	66075971	rs56195029	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (neutrophil)	27,236 European ancestry individuals	NA	3p14.1		rs56195029-A	0.4825	3E-8		0.0851	[0.055-0.115] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1089	chr3	66159152	66159153	rs145763646	29391396	McElroy SL	2018-02-02	Transl Psychiatry	Bipolar disorder with binge eating behavior: a genome-wide association study implicates PRR5-ARHGAP8.	Binge eating behaviour and bipolar disorder	398 European ancestry cases, 1,811 European ancestry controls	NA	3p14.1	SLC25A26	rs145763646-A	0.1	3E-7		2.0833335	[NR]	Affymetrix, Illumina [8000000] (imputed)	N
1091	chr3	66325073	66325074	rs782725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p14.1	NR	rs782725-T	0.327465	1E-22		0.019933	[0.016-0.024] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1091	chr3	66325073	66325074	rs782725	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p14.1	NR	rs782725-T	0.328073	1E-27		0.023525	[0.019-0.028] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1091	chr3	66326784	66326785	rs73129917	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.1	NR	rs73129917-C	0.01045	1E-11	(IGLL5)	0.1251	NR unit increase	Illumina [1671387] (imputed)	N
1091	chr3	66362205	66362206	rs1084537	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p14.1	SLC25A26	rs1084537-T	0.3925	1E-17		0.5648	[0.44-0.69] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1091	chr3	66363088	66363089	rs139440276	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	3p14.1		rs139440276-T	NR	9E-8		5.107252	NR	Affymetrix [7846216] (imputed)	N
1091	chr3	66365162	66365163	rs6781752	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3p14.1	LRIG1	rs6781752-A	0.205	7E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1091	chr3	66411213	66411214	rs332389	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p14.1		rs332389-A	NR	7E-18		0.0176	[0.014-0.022] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1091	chr3	66411213	66411214	rs332389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs332389-G	0.596009	2E-16				Affymetrix, Illumina [22063850] (imputed)	N
1091	chr3	66411213	66411214	rs332389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs332389-A	0.445688	4E-21				Affymetrix, Illumina [24246363] (imputed)	N
1091	chr3	66411213	66411214	rs332389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs332389-A	0.450599	3E-11				Affymetrix, Illumina [21126107] (imputed)	N
1091	chr3	66411213	66411214	rs332389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs332389-A	0.448647	7E-29				Affymetrix, Illumina [20825802] (imputed)	N
1091	chr3	66411213	66411214	rs332389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p14.1	NR	rs332389-A	0.39215	2E-13		0.013857	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1091	chr3	66411854	66411855	rs332388	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p14.1		rs332388-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1091	chr3	66411854	66411855	rs332388	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p14.1	SLC25A26	rs332388-C	0.4	8E-10	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1091	chr3	66427028	66427029	rs7630745	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	3p14.1	LRIG1	rs7630745-C	0.358	2E-9		0.025	[0.017-0.033] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1091	chr3	66427028	66427029	rs7630745	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3p14.1	SLC25A26	rs7630745-C	0.342502	9E-10		0.0141276	[0.0096-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr3	66427028	66427029	rs7630745	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3p14.1	NR	rs7630745-C	0.341952	3E-11		0.014002	[0.0099-0.0181] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1091	chr3	66427258	66427259	rs7626079	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p14.1	NR	rs7626079-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1091	chr3	66427258	66427259	rs7626079	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p14.1		rs7626079-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1091	chr3	66431601	66431602	rs2242285	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p14.1	LRIG1, SLC25A26	rs2242285-?	NR	6E-9	(EA)	0.34	[0.22-0.46] unit increase	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
1091	chr3	66431601	66431602	rs2242285	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p14.1	LRIG1	rs2242285-A	0.42	5E-8	(European)	0.37	[NR] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1091	chr3	66431601	66431602	rs2242285	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3p14.1	LRIG1	rs2242285-A		1E-7		0.32	[0.2-0.44] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1091	chr3	66431601	66431602	rs2242285	21076409	Sotoodehnia N	2010-11-14	Nat Genet	Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction.	QRS duration	39,717 European ancestry individuals, 690 Orcadian individuals	7,170 European ancestry individuals	3p14.1	SLC25A26, LRIG1	rs2242285-A	0.42	1E-8		0.37	[0.23-0.51] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1091	chr3	66432679	66432680	rs332371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.1	SLC25A26, LRIG1	rs332371-A	0.379305	3E-9	(26 ms)	0.0338572	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1091	chr3	66432679	66432680	rs332371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.1	SLC25A26, LRIG1	rs332371-A	0.379305	2E-8	(30 ms)	0.0315663	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1091	chr3	66432679	66432680	rs332371	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p14.1	SLC25A26, LRIG1	rs332371-A	0.379305	2E-8	(24 ms)	0.031771	[0.02-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1091	chr3	66433521	66433522	rs202007714	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	3p14.1	LRIG1	rs202007714-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
1091	chr3	66433521	66433522	rs202007714	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	3p14.1	LRIG1	rs202007714-?	9.97606E-5	3E-16				Illumina [~ 244000]	N
1091	chr3	66433521	66433522	rs202007714	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	3p14.1	LRIG1	rs202007714-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1091	chr3	66433521	66433522	rs202007714	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	3p14.1	LRIG1	rs202007714-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
1091	chr3	66434642	66434643	rs2306272	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.1		rs2306272-C	0.29	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1091	chr3	66434642	66434643	rs2306272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p14.1		rs2306272-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1091	chr3	66434642	66434643	rs2306272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.1		rs2306272-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1091	chr3	66434642	66434643	rs2306272	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3p14.1		rs2306272-?	NR	4E-9		0.0142085	[0.0097-0.0187] unit decrease	Affymetrix [20259828] (imputed)	N
1091	chr3	66434642	66434643	rs2306272	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p14.1	LRIG1	rs2306272-C	0.32	5E-11		1.05	[1.04-1.07]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1091	chr3	66436473	66436474	rs147372871	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	3p14.1	LRIG1	rs147372871-?	1.93199E-4	2E-16				Illumina [~ 244000]	N
1091	chr3	66437085	66437086	rs17831815	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.1	LRIG1	rs17831815-T		4E-7		0.203	unit increase	Affymetrix [at least 2696785] (imputed)	N
1091	chr3	66437085	66437086	rs17831815	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p14.1	LRIG1	rs17831815-T		5E-11		0.176	unit increase	Affymetrix [at least 2696785] (imputed)	N
1091	chr3	66442179	66442180	rs4856886	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3p14.1		rs4856886-T	0.805366	6E-9		0.0518009	[0.034-0.069] decrease	Affymetrix [NR]	N
1091	chr3	66442434	66442435	rs812481	29917119	Schmit SL	2018-06-16	J Natl Cancer Inst	Novel Common Genetic Susceptibility Loci for Colorectal Cancer.	Colorectal cancer	36,948 European ancestry cases, 30,864 European ancestry controls	12,952 European ancestry cases, 48,383 European ancestry controls, 8,580 East Asian ancestry cases, 13,050 East Asian ancestry controls, 1,611 Hispanic cases, 4,330 Hispanic controls, 1,894 African American cases, 4,703 African American controls	3p14.1	NR	rs812481-G	0.559	1E-6	(EA)	1.0638298	[1.03-1.09]	Affymetrix, Illumina [12931465] (imputed)	N
1091	chr3	66442434	66442435	rs812481	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	3p14.1	SLC25A26, LRIG1	rs812481-G	0.58	3E-8	(EA)	1.09	[1.05-1.12]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1091	chr3	66442434	66442435	rs812481	26151821	Schumacher FR	2015-07-07	Nat Commun	Genome-wide association study of colorectal cancer identifies six new susceptibility loci.	Colorectal cancer	18,299 European ancestry cases, 19,656 European ancestry controls	4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls	3p14.1	SLC25A26, LRIG1	rs812481-G	0.58	2E-8		1.09	[1.05-1.11]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1091	chr3	66442544	66442545	rs9840088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p14.1		rs9840088-C	NR	3E-10		0.0136	[0.0095-0.0177] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1091	chr3	66442544	66442545	rs9840088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3p14.1		rs9840088-C	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1091	chr3	66445600	66445601	rs9827908	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)	8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	3p14.1	LRIG1	rs9827908-?		6E-8	(AA)	48.5	[NR]	Illumina [936149]	N
1091	chr3	66452973	66452996	rs6147862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3p14.1	NR	rs6147862-T	NR	1E-9		0.0154	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
1091	chr3	66452973	66452996	rs6147862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p14.1	LRIG1	rs6147862-T	0.617595	3E-17		0.01938994	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1091	chr3	66452973	66452996	rs6147862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p14.1	LRIG1	rs6147862-T	0.617637	5E-19		0.0197807	[0.016-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr3	66452973	66452996	rs6147862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p14.1	LRIG1	rs6147862-T	0.617625	2E-24		0.023254806	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1091	chr3	66452973	66452996	rs6147862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p14.1	LRIG1	rs6147862-T	0.6182	1E-9		0.02221619	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1091	chr3	66452973	66452996	rs6147862	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p14.1	LRIG1	rs6147862-T	0.6181	7E-14		0.02749937	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1091	chr3	66452973	66452973	rs763232871	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3p14.1	NR	rs763232871-D	0.617865	3E-19		0.019016	[0.015-0.023] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1091	chr3	66452974	66452997	rs375741259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p14.1		rs375741259-T	NR	3E-13		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1092	chr3	66454190	66454191	rs34080181	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p14.1		rs34080181-A	NR	2E-8		0.0555	[0.036-0.075] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1092	chr3	66454190	66454191	rs34080181	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p14.1	LRIG1, SLC25A26	rs34080181-G	0.621	1E-10		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1092	chr3	66479486	66479487	rs13078828	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p14.1	LRIG1	rs13078828-?	NR	4E-7				Affymetrix [5486770] (imputed)	N
1092	chr3	66484955	66484956	rs3965156	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3p14.1	LRIG1	rs3965156-A	0.475542	1E-8		0.014749	[0.0096-0.0198] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1092	chr3	66492603	66492604	rs3856595	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p14.1		rs3856595-G	0.55	1E-9				NR [NR] (imputed)	N
1092	chr3	66492603	66492604	rs3856595	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p14.1		rs3856595-G	0.55	4E-9		0.009	% increase	NR [NR] (imputed)	N
1092	chr3	66502980	66502981	rs11706832	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Non-glioblastoma glioma	5,819 European ancestry cases, 18,190 European ancestry controls.	NA	3p14.1	LRIG1	rs11706832-C	0.456	8E-9		1.15	1.09-1.20	Illumina [at least 6769856] (imputed)	N
1092	chr3	66507441	66507442	rs6549120	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p14.1		rs6549120-?	NR	3E-25				NR [~ 8900000] (imputed)	N
1092	chr3	66517669	66517670	rs3845903	33137956	Yang Y	2020-10-29	Genes (Basel)	Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.	Orofacial clefts	160 African ancestry cases, 584 Asian ancestry cases, 1,068 European ancestry cases, 37 Native American ancestry cases, 849 admixed ancestry cases, 5 cases, 219 African ancestry controls, 1,433 Asian ancestry controls, 3,563 European ancestry controls, 152 Native American ancestry controls, 2,420 admixed ancestry controls, 52 controls	NA	3p14.1	LRIG1	rs3845903-?	NR	3E-6	(conditional on rs72728755, rs7552, rs2235370, rs16957821, rs12600562 and rs12543318)	0.1	[0.061-0.139] unit decrease	Illumina [at least 589945] (imputed)	N
1092	chr3	66525962	66525963	rs3845905	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (carboplatin)	261 Japanese ancestry cases, 262 Japanese ancestry controls	NA	3p14.1	LRIG1	rs3845905-G	0.828	6E-6	(Allelic model)	2.433	[1.645-3.598]	Illumina [733202]	N
1092	chr3	66525962	66525963	rs3845905	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs)	428 Japanese ancestry cases, 743 Japanese ancestry controls	NA	3p14.1	LRIG1	rs3845905-G	0.85	4E-6	(Allelic model)	1.894	[1.433-2.503]	Illumina [733202]	N
1092	chr3	66542862	66542863	rs2280575	34151794	Kang S	2021-06-18	J Alzheimers Dis	Potential Novel Genes for Late-Onset Alzheimer's Disease in East-Asian Descent Identified by APOE-Stratified Genome-Wide Association Study.	Late-onset Alzheimer's disease in APOEe4 non-carriers	621 Korean ancestry cases, 976 Korean ancestry controls	435 Japanese ancestry cases, 815 Japanese ancestry controls	3p14.1		rs2280575-?	NR	2E-8		0.544		NR [NR] (imputed)	N
1092	chr3	66558459	66558460	rs111279397	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	3p14.1		rs111279397-A	NR	2E-7		4.484305	NR	Affymetrix [7846216] (imputed)	N
1093	chr3	66710032	66710033	rs114019667	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in dyslipidemia	295 Korean ancestry cases, 20,474 Korean ancestry controls	NA	3p14.1		rs114019667-T	0.06764	1E-6		1.894	[1.464-2.451]	Affymetrix [7975321] (imputed)	N
1094	chr3	66755782	66755783	rs17045020	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.1	KBTBD8	rs17045020-?	NR	8E-7	(aminoadipic acid)	0.71686244	[0.43-1] unit increase	Affymetrix [at least 2500000] (imputed)	N
1094	chr3	66768363	66768364	rs17045031	21909108	Bis JC	2011-09-11	Nat Genet	Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.	Carotid intima media thickness	Up to 31,211 European ancestry individuals	10,553 European ancestry individuals, 687 Orcadian individuals	3p14.1	LRIG1	rs17045031-A	NR	4E-7	(Plaque)	0.2986	[0.18-0.42] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1094	chr3	66769883	66769884	rs6549373	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	3p14.1	RP11-814M22.1	rs6549373-T	0.06	2E-6		0.349	[0.21-0.49] unit decrease	Affymetrix [2366856] (imputed)	N
1094	chr3	66789000	66789001	rs754821	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p14.1		rs754821-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1094	chr3	66794148	66794149	rs1379192	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.1		rs1379192-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1094	chr3	66798949	66798950	rs13069000	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3p14.1	LRIG1, KBTBD8	rs13069000-G	0.17	1E-19		0.0093	[0.0073-0.0113] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1094	chr3	66804199	66804200	rs13080378	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p14.1		rs13080378-G	NR	4E-61		0.0401	[0.035-0.045] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1094	chr3	66806827	66806828	rs11720938	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3p14.1	LOC105377143	rs11720938-T	0.8185	1E-40		0.0118	[0.01-0.014] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1094	chr3	66809941	66809942	rs13069049	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	3p14.1	intergenic	rs13069049-T	0.17	3E-18	(BUN)	0.0182	[0.014-0.022] mg/dL increase	Affymetrix [~ 2200000] (imputed)	N
1094	chr3	66815074	66815075	rs13059418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	3p14.1		rs13059418-T	0.164495	1E-29		0.0512253	[0.042-0.06] unit increase	Illumina [13478792] (imputed)	N
1094	chr3	66823156	66823157	rs11709625	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	3p14.1	intergenic	rs11709625-A	0.17	1E-10	(BUN)	0.102	[0.071-0.133] unit increase	Illumina [561583]	N
1094	chr3	66829907	66829908	rs12496230	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3p14.1		rs12496230-C	0.192391	1E-12		0.019991694	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1094	chr3	66829907	66829908	rs12496230	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	3p14.1	LRIG1, KBTBD8	rs12496230-?	NR	4E-6		0.54	[0.30-0.78] unit increase	Illumina [1075436] (imputed)	N
1094	chr3	66831641	66831642	rs13100186	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3p14.1		rs13100186-?	NR	8E-16				NR [~ 8900000] (imputed)	N
1095	chr3	66849733	66849734	rs9847377	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3p14.1	LRIG1, KBTBD8	rs9847377-T	0.52	2E-8		0.0049	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1095	chr3	66852900	66852901	rs13078081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p14.1		rs13078081-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1095	chr3	66858049	66858050	rs6781336	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	3p14.1	LRIG1	rs6781336-?	NR	4E-14		0.1054	[0.078-0.133] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1095	chr3	66858049	66858050	rs6781336	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3p14.1	KBTBD8, LRIGI	rs6781336-A	0.701	3E-18		0.121	[0.094-0.148] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1095	chr3	66858339	66858340	rs4856961	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	3p14.1	NR	rs4856961-C		3E-13		0.11	[0.071-0.149] unit increase	NR [NR]	N
1095	chr3	66858339	66858340	rs4856961	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p14.1	LOC105377143, KBTBD8	rs4856961-C	0.6355	2E-10		0.0931	[0.064-0.123] unit increase	Affymetrix [~ 11900000] (imputed)	N
1095	chr3	66860177	66860178	rs1867409	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3p14.1	KBTBD8	rs1867409-G	0.7	9E-15				Affymetrix, Illumina [8002429] (imputed)	N
1095	chr3	66881401	66881402	rs12631955	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p14.1		rs12631955-C	NR	8E-9		0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1095	chr3	66881401	66881402	rs12631955	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p14.1		rs12631955-C	0.11435	1E-11		0.023611566	[0.017-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr3	66884694	66884695	rs78459863	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	3p14.1		rs78459863-?	NR	9E-6		0.7152704	[0.4-1.03] unit increase	Illumina [9875426] (imputed)	N
1095	chr3	66890148	66890149	rs6549447	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p14.1		rs6549447-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1095	chr3	66896444	66896445	rs7609579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p14.1	NR	rs7609579-A	0.255557	1E-11		0.017402437	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr3	66896444	66896445	rs7609579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p14.1	NR	rs7609579-A	0.255583	2E-12		0.018116709	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr3	66896444	66896445	rs7609579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p14.1		rs7609579-A	0.255586	9E-13		0.018307662	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr3	66896444	66896445	rs7609579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p14.1		rs7609579-A	0.255593	5E-14		0.019309646	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1095	chr3	66903365	66903366	rs34430548	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs34430548-T	0.201854	1E-13				Affymetrix, Illumina [24653286] (imputed)	N
1095	chr3	66905774	66905775	rs9862849	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	3p14.1	KBTBD8	rs9862849-?	NR	3E-6	(males)	1.6597484		Affymetrix, Illumina [2928658] (imputed)	N
1096	chr3	66994701	66994702	rs11128322	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	3p14.1	LRIG1, KBTBD8	rs11128322-?	0.2290000000000001	9E-7		1.1379055	[1.08-1.2]	Affymetrix, Illumina [7701827] (imputed)	N
1096	chr3	66994954	66994955	rs75731687	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3p14.1	NR	rs75731687-?	NR	5E-6		1.0569	[0.6-1.51] unit decrease	Illumina [at least 560000] (imputed)	N
1096	chr3	67075857	67075858	rs9810816	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.1	SUCLG2	rs9810816-?	NR	2E-6	(LPC 14:0)	0.5131587	[0.3-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1097	chr3	67143837	67143838	rs4392363	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	3p14.1	intergenic	rs4392363-?	0.74	1E-6		1.15	[1.09-1.22]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1097	chr3	67204684	67204685	rs140102162	29378355	Stanne TM	2018-02-01	Thromb Haemost	A Genome-wide Study of Common and Rare Genetic Variants Associated with Circulating Thrombin Activatable Fibrinolysis Inhibitor.	Thrombin-activatable fibrinolysis inhibitor activation peptide	3,124 European ancestry individuals	NA	3p14.1	MIR4272, KBTBD8, SUCLG2	rs140102162-G	0.011	1E-8		0.39	[0.25-0.53] unit decrease	Illumina [10000000] (imputed)	N
1098	chr3	67366907	67366908	rs79075676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs79075676-T	0.0915964	3E-14				Affymetrix, Illumina [24246363] (imputed)	N
1098	chr3	67366907	67366908	rs79075676	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs79075676-T	0.0892525	7E-15				Affymetrix, Illumina [20825802] (imputed)	N
1099	chr3	67373976	67373977	rs977102	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3p14.1	intergenic	rs977102-?	NR	2E-6	(SF7)			Affymetrix [5476100] (imputed)	N
1099	chr3	67384669	67384670	rs6780414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs6780414-T	0.8176	7E-9		0.0105	[0.007-0.014] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1099	chr3	67384669	67384670	rs6780414	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.1	Intergenic	rs6780414-T	0.8176	5E-9	(MTAG)	0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1099	chr3	67410579	67410580	rs543963862	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p14.1	SUCLG2	rs543963862-A	0.0018	6E-6		0.6776	[0.38-0.97] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr3	67410579	67410580	rs543963862	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p14.1	SUCLG2	rs543963862-A	0.0018	9E-6		0.6574	[0.37-0.95] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1099	chr3	67416321	67416322	rs17806888	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA		SUCLG2	rs17806888-T	0.88	7E-11	(succinylcarnitine)	0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
1099	chr3	67416321	67416322	rs17806888	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals		SUCLG2	rs17806888-T	0.88	2E-9		0.036	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1099	chr3	67417104	67417105	rs2363709	23146381	Levin AM	2012-11-10	J Allergy Clin Immunol	A meta-analysis of genome-wide association studies for serum total IgE in diverse study populations.	IgE levels	2,469 African American individuals, 259 Latino individuals, 1,564 European ancestry individuals	2,961 African American individuals, 1,477 Latino individuals, 649 European ancestry individuals, 680 Hutterite individuals	3p14.1	SUCLG2	rs2363709-G	NR	5E-6		0.12	[0.07-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1099	chr3	67417464	67417465	rs9864384	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.1	KBTBD8	rs9864384-?	NR	3E-6	(CE 18:3)	0.16084549	[0.094-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
1099	chr3	67423509	67423510	rs75017517	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs75017517-A	0.1361	4E-9	(conditional-joint)	0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p14.1		rs115560420-T	NR	3E-15		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p14.1	SUCLG2	rs115560420-T	0.113188	2E-10		0.022528036	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p14.1	SUCLG2	rs115560420-T	0.113158	1E-15		0.0288649	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p14.1	SUCLG2	rs115560420-T	0.113171	4E-12		0.02407572	[0.017-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	3p14.1	SUCLG2	rs115560420-T	0.13	7E-15	(succinylcarnitine (C4-DC))	0.176	[0.13-0.22] unit increase	Illumina [7750367] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p14.1		rs115560420-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1099	chr3	67425962	67425963	rs115560420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p14.1		rs115560420-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1099	chr3	67426280	67426281	rs35494829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p14.1	NR	rs35494829-C	0.114195	7E-17		0.023893	[0.018-0.029] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1099	chr3	67430870	67430871	rs73098354	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Spontaneous adipocyte lipolysis	856 European ancestry individuals	NA	3p14.1	NR	rs73098354-A	0.978421	9E-6		0.266	[0.15-0.38] unit decrease	NR [9260588] (imputed)	N
1099	chr3	67442641	67442642	rs76010824	26307654	Szulkin R	2015-08-25	Cancer Epidemiol Biomarkers Prev	Genome-wide association study of prostate cancer-specific survival.	Prostate cancer (survival)	7,322 cases	18,197 European ancestry cases	3p14.1	NR	rs76010824-A	0.07	1E-7		1.26	[1.16-1.38]	Affymetrix, Illumina [up to 9536409] (imputed)	N
1099	chr3	67452042	67452043	rs1490265	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	3p14.1	SUCLG2	rs1490265-A	0.7079	2E-9		0.026	[0.018-0.034] unit increase	Affymetrix [27624732] (imputed)	N
1099	chr3	67455802	67455803	rs4132748	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.1	SUCLG2	rs4132748-T	0.3068	7E-15		0.02	[0.015-0.025] unit decrease	Affymetrix [19819130] (imputed)	N
1099	chr3	67455802	67455803	rs4132748	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p14.1	SUCLG2	rs4132748-T	0.3068	1E-15		0.0205	[0.015-0.026] unit decrease	Affymetrix [19819130] (imputed)	N
1099	chr3	67455802	67455803	rs4132748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p14.1		rs4132748-?	NR	9E-16				NR [~ 8900000] (imputed)	N
1099	chr3	67457032	67457033	rs62256378	25027320	Ramirez A	2014-07-15	Hum Mol Genet	SUCLG2 identified as both a determinator of CSF A?1-42 levels and an attenuator of cognitive decline in Alzheimer's disease.	Cerebrospinal AB1-42 levels in Alzheimer's disease dementia	363 European ancestry individuals	515 individuals	3p14.1	SUCLG2	rs62256378-A	0.061	3E-12		0.71	[0.51-0.91] unit increase	Illumina [6812394] (imputed)	N
1099	chr3	67457497	67457498	rs4453858	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	3p14.1	SUCLG2	rs4453858-?	0.41	2E-6	(American Indian, additive )	1.4084507		Affymetrix [NR]	N
1100	chr3	67531387	67531388	rs6792584	22144915	Fan Q	2011-12-01	PLoS Genet	Genome-wide meta-analysis of five Asian cohorts identifies PDGFRA as a susceptibility locus for corneal astigmatism.	Corneal astigmatism	1,231 Chinese ancestry cases, 785 Chinese ancestry controls, 1,018 Malay ancestry cases, 1,220 Malay ancestry controls	825 Indian ancestry cases, 1,314 Indian ancestry controls, 760 Chinese ancestry child cases, 169 Chinese ancestry child controls, 397 Chinese ancestry trios		SUCLG2	rs6792584-G	NR	5E-6		1.24	[1.14-1.34]	Illumina [460528]	N
1104	chr3	68142350	68142351	rs11920869	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.1	NR	rs11920869-C	0.01045	5E-9	(AGT)	0.08093	NR unit increase	Illumina [1671387] (imputed)	N
1104	chr3	68142350	68142351	rs11920869	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p14.1	NR	rs11920869-C	0.01045	2E-8	(DUSP3)	0.05757	NR unit decrease	Illumina [1671387] (imputed)	N
1105	chr3	68233946	68233947	rs11716986	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric areal bone mineral density (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p14.1	NR	rs11716986-G	0.192	2E-6	(Females)	0.291595	[0.17-0.41] unit increase	Illumina [~ 6600000] (imputed)	N
1106	chr3	68328839	68328840	rs11708835	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p14.1		rs11708835-G	0.12433	4E-6		0.046659	[0.027-0.067] unit increase	Affymetrix [15580782] (imputed)	N
1106	chr3	68330051	68330052	rs1027238	30294719	Zeng Y	2018-08-24	JAMA Netw Open	Sex Differences in Genetic Associations With Longevity.	Longevity	564 Han Chinese ancestry male centenarian cases, 1,614 Han Chinese ancestry female centenarian cases, 773 Han Chinese ancestry male middle-aged controls, 1,526 Han Chinese ancestry female middle-aged controls	NA	3p14.1	FAM19A1	rs1027238-?	0.93	3E-6	(female)	1.5337424	[1.28-1.82]	Illumina [5595657] (imputed)	N
1106	chr3	68368091	68368091	rs569285132	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM19A1	rs569285132-?	NR	3E-9		1.64529	[NR] unit increase	Affymetrix [NR] (imputed)	N
1106	chr3	68377809	68377810	rs1491744	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.1	NR	rs1491744-?	NR	8E-14				Affymetrix [NR]	N
1107	chr3	68476073	68476074	rs6549126	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Superior temporal sulcus banks volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p14.1	FAM19A1	rs6549126-?		5E-6				Illumina [4322238] (imputed)	N
1107	chr3	68488922	68488923	rs77468963	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		FAM19A1	rs77468963-?	NR	2E-10	(female)	1.45595	[NR] unit increase	Affymetrix [NR] (imputed)	N
1107	chr3	68497839	68497840	rs6766498	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.1	FAM19A4	rs6766498-?	NR	3E-6	(ornithine)	0.18861154	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1107	chr3	68527134	68527135	rs1858242	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sedentary behaviour duration	91,105 European ancestry individuals	NA	3p14.1	LOC105377146	rs1858242-A	0.259	3E-9		0.031	[0.021-0.041] SD units increase	NR [9926106] (imputed)	N
1108	chr3	68585663	68585664	rs149577176	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FAM19A1	rs149577176-?	NR	1E-12	(female)	0.732598	[NR] unit increase	Affymetrix [NR] (imputed)	N
1108	chr3	68587305	68587306	rs56118025	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	3p14.1		rs56118025-G	0.029	4E-6		0.119	[0.068-0.17] unit increase	Illumina [6361597] (imputed)	N
1108	chr3	68595004	68595005	rs78655006	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3p14.1	FAM19A1	rs78655006-A	NR	7E-6		0.35665923	[0.2-0.51] unit decrease	Illumina [> 6200000] (imputed)	N
1108	chr3	68650693	68650694	rs13073959	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3p14.1	NR	rs13073959-T	0.02	9E-6		1.35	[1.21-1.49]	Illumina [8468885] (imputed)	N
1109	chr3	68712547	68712548	rs146646693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p14.1	Intergenic	rs146646693-T	0.999	2E-6	(AA)	0.303	unit increase	Illumina [NR] (imputed)	N
1109	chr3	68781235	68781236	rs1156293	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	3p14.1	FAM19A4	rs1156293-G	0.07132	1E-6	(height)	0.02157	NR unit decrease	Affymetrix [305158]	N
1109	chr3	68796155	68796156	rs11708245	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p14.1	NR	rs11708245-?	NR	1E-7	(EA)	0.1938	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1110	chr3	68868351	68868352	rs567532971	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3p14.1		rs567532971-T	NR	8E-6		0.60811		Affymetrix, Illumina [62056310] (imputed)	N
1110	chr3	68869922	68869923	rs9849884	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p14.1		rs9849884-A	0.5836	3E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1110	chr3	68910802	68910803	rs4855530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p14.1	Intergenic	rs4855530-T	0.1966	2E-9	(MTAG)	0.01	[0.0069-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1110	chr3	68912530	68912531	rs923512	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p14.1	FAM19A4	rs923512-G	0.151	3E-8		0.015308273	[0.0099-0.0207] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1110	chr3	68925777	68925778	rs17048091	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	3p14.1	FAM19A4	rs17048091-G	0.1427	3E-6	(waist)	0.07844	NR unit increase	Affymetrix [305158]	N
1110	chr3	68926300	68926301	rs13070517	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3p14.1	NR	rs13070517-T	NR	2E-8		0.01362	NR unit decrease	NR [7259579]	N
1111	chr3	68945152	68945153	rs60743220	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3p14.1	NR	rs60743220-T		2E-8		0.08	[0.06-0.1] unit increase	NR [NR]	N
1111	chr3	68945152	68945153	rs60743220	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p14.1	FAM19A4	rs60743220-?		7E-24				Affymetrix, Illumina [NR] (imputed)	N
1111	chr3	68955483	68955484	rs4855537	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QRS interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	3p14.1	FAM19A4	rs4855537-?	NR	1E-6	(AA)	4.6	[2.84-6.36] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1111	chr3	68959904	68959905	rs34539210	31738830	McGraw KL	2019-11-01	Blood Adv	Non-del(5q) myelodysplastic syndromes-associated loci detected by SNP-array genome-wide association meta-analysis.	Non-del(5q) myelodysplastic syndromes	907 European ancestry cases, 5,605 European ancestry controls	NA	3p14.1	FAM19A4	rs34539210-T	0.76	4E-6		1.3888888	[1.2-1.59]	Affymetrix [7515136] (imputed)	N
1111	chr3	69032483	69032484	rs9813487	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p14.1	TMF1	rs9813487-?	NR	2E-6	(UDP glucose; UDP galactose)	0.22944103	[0.14-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1111	chr3	69035123	69035124	rs139497601	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p14.1		rs139497601-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1111	chr3	69040600	69040601	rs7644667	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p14.1	EOGT, TMF1, UBA3	rs7644667-?	NR	5E-9		0.0142657	[0.0095-0.019] unit decrease	Affymetrix [25921788] (imputed)	N
1111	chr3	69073419	69073421	rs201235194	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p14.1		rs201235194-G	NR	2E-9		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1112	chr3	69082656	69082657	rs937859	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3p14.1	NR	rs937859-T	0.65	6E-15		0.015	[0.011-0.019] unit increase	NR [NR]	N
1112	chr3	69083226	69083227	rs139801478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p14.1		rs139801478-A	NR	1E-8		0.0922	[0.061-0.124] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1112	chr3	69087411	69087412	rs9809889	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	3p14.1	NR	rs9809889-A	NR	4E-6		0.01175	[0.0067-0.0168] unit decrease	Illumina [541614]	N
1112	chr3	69142923	69142923	rs71115649	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3p14.1	NR	rs71115649-A	0.345839	9E-11		0.00768124	[0.0053-0.0101] unit increase	Affymetrix [16582621] (imputed)	N
1112	chr3	69142923	69142923	rs71115649	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3p14.1	NR	rs71115649-A	0.345839	2E-9		0.00763296	[0.005-0.0102] unit increase	Affymetrix [16582614] (imputed)	N
1112	chr3	69145631	69145632	rs11128111	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3p14.1	ARL6IP5	rs11128111-T	0.48	5E-8		0.020891	[0.013-0.028] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1112	chr3	69147518	69147519	rs1965132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p14.1	NR	rs1965132-C	0.505178	2E-10		0.00545868	[0.0038-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1112	chr3	69147518	69147519	rs1965132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p14.1	NR	rs1965132-C	0.505178	9E-8		0.00508877	[0.0032-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1112	chr3	69152592	69152593	rs7650936	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p14.1	NR	rs7650936-?	NR	8E-7		0.008589	[0.0052-0.012] unit decrease	Affymetrix [805426] (imputed)	N
1112	chr3	69154342	69154343	rs7039	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3p14.1		rs7039-G	NR	2E-16		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1112	chr3	69154342	69154343	rs7039	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3p14.1	ARL6IP5	rs7039-C	0.4464	5E-11		0.0205	[0.014-0.027] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1112	chr3	69173374	69173375	rs7638995	22881374	Cummings AC	2012-09-01	Ann Hum Genet	Genome-wide association and linkage study in the Amish detects a novel candidate late-onset Alzheimer disease gene.	Alzheimer's disease (late onset)	109 Amish cases, 689 Amish controls	NA	3p14.1	intergenic	rs7638995-A	0.11	2E-6				Affymetrix [614963]	N
1112	chr3	69183403	69183404	rs3968927	33669428	Franco LAM	2021-02-16	Int J Mol Sci	Pharmacogenomic Profile and Adverse Drug Reactions in a Prospective Therapeutic Cohort of Chagas Disease Patients Treated with Benznidazole.	Adverse response to benznidazole in Chagas disease	61 Hispanic/Latino or unknown ancestry cases, 29 Hispanic/Latino or unknown ancestry controls	NA	3p14.1	NR	rs3968927-T	NR	3E-7				Affymetrix [at least 811691] (imputed)	N
1112	chr3	69197500	69197501	rs534455553	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p14.1		rs534455553-T	0.00568500000000005	2E-10		0.09636414	[0.067-0.126] unit increase	Affymetrix [93095623] (imputed)	N
1112	chr3	69197500	69197501	rs534455553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p14.1	NR	rs534455553-C	0.994369	6E-11				Affymetrix, Illumina [20825802] (imputed)	N
1112	chr3	69197500	69197501	rs534455553	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p14.1	NR	rs534455553-C	0.994224	6E-13		0.095179	[0.069-0.121] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1113	chr3	69219287	69219288	rs79274490	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	3p14.1	NR	rs79274490-?	NR	6E-6		0.8432	[0.5-1.19] unit decrease	Illumina [at least 560000] (imputed)	N
1113	chr3	69252898	69252899	rs6806528	31591516	Ricano-Ponce I	2019-10-07	Eur J Hum Genet	Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease.	Celiac disease	12,567 European ancestry cases, 381 Hispanic cases, 14,013 European ancestry controls, 813 Hispanic controls	NA	3p14.1	FRMD4B	rs6806528-T	0.13	9E-9		1.19		Illumina [127855]	N
1113	chr3	69252898	69252899	rs6806528	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3p14.1	FRMD4B	rs6806528-A	0.10	2E-7		1.19	[1.12-1.27]	Illumina [292387]	N
1113	chr3	69264795	69264796	rs7640502	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs7640502-?	NR	7E-10				Affymetrix [NR] (imputed)	N
1113	chr3	69266651	69266652	rs34416281	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs34416281-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69267239	69267240	rs73097725	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs73097725-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69267326	69267327	rs73097726	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs73097726-?	NR	1E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69268493	69268493	rs35987403	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs35987403-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69268534	69268535	rs35860408	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs35860408-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69269710	69269711	rs35530977	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs35530977-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1113	chr3	69270099	69270100	rs73097738	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs73097738-?	NR	1E-8				Affymetrix [NR] (imputed)	N
1113	chr3	69271202	69271203	rs73097740	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs73097740-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69271455	69271456	rs4621334	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs4621334-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69271750	69271751	rs4582065	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs4582065-?	NR	2E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69271905	69271906	rs35423263	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs35423263-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69272076	69272077	rs36022055	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs36022055-?	NR	3E-9				Affymetrix [NR] (imputed)	N
1113	chr3	69273131	69273132	rs13073189	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p14.1		rs13073189-?	NR	2E-8				Affymetrix [NR] (imputed)	N
1113	chr3	69278897	69278898	rs74633073	32428537	Meguro A	2020-05-16	Ophthalmology	Genome-wide association study in Asians identifies novel loci for high myopia and highlights a nervous system role in its pathogenesis.	High myopia	1,632 Japanese ancestry cases, 1,586 Japanese ancestry controls	800 East Asian ancestry cases, 81 Singaporean ancestry cases, 5,169 East Asian ancestry controls, 4,777 Singaporean ancestry controls	3p14.1	FRMD4B	rs74633073-T	0.026	2E-8		1.55	NR	Affymetrix, Illumina [4996193] (imputed)	N
1113	chr3	69307385	69307386	rs189712080	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3p14.1	FRMD4B	rs189712080-A	0.0096	3E-7		0.4132	[0.25-0.57] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1113	chr3	69325523	69325524	rs35233461	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p14.1		rs35233461-C	0.2	2E-9		6.01	z score increase	Affymetrix [9061022] (imputed)	N
1114	chr3	69337497	69337498	rs7623492	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 188)	19,670 European ancestry individuals	NA	3p14.1		rs7623492-?	NR	9E-10				NR [9705931] (imputed)	N
1114	chr3	69347166	69347167	rs73838341	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	3p14.1		rs73838341-T	0.978956	2E-6		0.0472954	[0.028-0.067] unit decrease	Illumina [13900000] (imputed)	N
1114	chr3	69399722	69399723	rs9310148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p14.1		rs9310148-C	NR	5E-9		0.0576	[0.038-0.077] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1114	chr3	69402800	69402801	rs6795775	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p14.1	FRMD4B	rs6795775-T	0.2852	1E-19		0.6572	[0.52-0.8] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1114	chr3	69406180	69406181	rs17005647	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p14.1	FRMD4B	rs17005647-T	0.364	3E-9		1.04	[1.03-1.06]	Illumina [34740186] (imputed)	N
1114	chr3	69406801	69406802	rs900669	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3p14.1	FRMD4B	rs900669-A	0.25	6E-9		0.8	[0.55-1.05] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1114	chr3	69410724	69410725	rs1483890	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3p14.1	FRMD4B	rs1483890-G	0.3	3E-15		0.2836	[0.21-0.35] unit increase	Affymetrix [19941912] (imputed)	N
1114	chr3	69440850	69440851	rs7648449	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p14.1	NR	rs7648449-C	NR	8E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1114	chr3	69442636	69442637	rs922948	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3p14.1	intergenic	rs922948-?	NR	2E-6	(ShaftW1f)			Affymetrix [70897]	N
1115	chr3	69471551	69471552	rs73109466	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 77)	19,670 European ancestry individuals	NA	3p14.1		rs73109466-?	NR	7E-12				NR [9705931] (imputed)	N
1115	chr3	69473753	69473754	rs6781386	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p14.1	NR	rs6781386-C	0.3089	6E-12				NR [9056863] (imputed)	N
1115	chr3	69480787	69480788	rs58006784	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p14.1	NR	rs58006784-T	0.309	2E-9				NR [9056863] (imputed)	N
1115	chr3	69482014	69482015	rs59234490	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p14.1		rs59234490-C	0.31	9E-10		6.13	z score increase	Affymetrix [9061022] (imputed)	N
1115	chr3	69494577	69494578	rs9818394	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p14.1		rs9818394-C	0.31	2E-23		9.97	z score increase	Affymetrix [9061022] (imputed)	N
1115	chr3	69499802	69499803	rs112196420	28040410	Meyers JL	2016-12-28	Int J Psychophysiol	A genome wide association study of fast beta EEG in families of European ancestry.	Fast beta electroencephalogram	1,564 European ancestry individuals from 117 alcohol dependence affected families	NA	3p14.1	FRMD4B	rs112196420-T	0.03	2E-7		0.339	[0.21-0.47] unit decrease	Illumina [12973748] (imputed)	N
1115	chr3	69552203	69552204	rs9834968	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	3p14.1	FRMD4B, MITF	rs9834968-A	NR	7E-6		4.481	NR z score increase	Illumina [7839440] (imputed)	N
1115	chr3	69557770	69557771	rs904419	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	prednisolone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	3p14.1	FRMD4B	rs904419-A	0.395	4E-8				Illumina [331281]	N
1115	chr3	69557770	69557771	rs904419	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	dexamethasone sensitivity in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	3p14.1	FRMD4B	rs904419-A	0.395	3E-6				Illumina [331281]	N
1115	chr3	69572005	69572006	rs62252355	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	3p14.1	NR	rs62252355-C	0.2	2E-16		0.37	[0.27-0.47] unit decrease	Affymetrix [9231066] (imputed)	N
1115	chr3	69572005	69572006	rs62252355	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	3p14.1	NR	rs62252355-C	0.2	2E-16		0.37	[0.27-0.47] unit decrease	Affymetrix [9231066] (imputed)	N
1116	chr3	69610007	69610008	rs77327348	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	3p14.1	FRMD4B	rs77327348-G	0.934	8E-6	(Slope index)	0.2598	[0.15-0.37] unit increase	Affymetrix [8042262] (imputed)	N
1116	chr3	69623187	69623188	rs7647307	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	3p14.1	LOC642487	rs7647307-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
1116	chr3	69629216	69629217	rs78631015	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	3p14.1	OTOL1	rs78631015-A	0.0887	3E-6		0.1678	[0.097-0.239] unit increase	Illumina [up to 38043574] (imputed)	N
1116	chr3	69632182	69632183	rs142605903	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	3p14.1	FRMD4B, MITF	rs142605903-A	0.017	1E-7		2.6	[1.82-3.72]	Illumina [7206774] (imputed)	N
1116	chr3	69640801	69640802	rs7623679	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p14.1	NR	rs7623679-?	NR	2E-7				Affymetrix [NR]	N
1117	chr3	69764202	69764203	rs933992	30217807	Robinson-Cohen C	2018-09-14	J Am Soc Nephrol	Genetic Variants Associated with Circulating Fibroblast Growth Factor 23.	Circulating fibroblast growth factor 23 levels	16,624 European ancestry individuals	4,443 African ancestry individuals	3p13	RP11-444P10.1, MITF	rs933992-T	0.1535	3E-6	(EA)	0.0268	[0.015-0.039] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1117	chr3	69795051	69795052	rs13314892	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS complex (12-leadsum)	up to 47,942 European ancestry individuals, up to 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	3p13	MITF	rs13314892-?	NR	9E-9	(EA)	157.82	[104.02-211.62] unit increase	Affymetrix, Illumina, Perlegen [2766983] (imputed)	N
1117	chr3	69797325	69797326	rs1121878	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p13	MITF	rs1121878-A	NR	4E-8		0.0158263	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
1117	chr3	69797412	69797413	rs2014520	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3p13		rs2014520-A	NR	7E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1117	chr3	69805616	69805617	rs34858804	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p13	MITF	rs34858804-A	0.4259	1E-12		0.02584589	[0.019-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr3	69805616	69805617	rs34858804	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3p13	MITF	rs34858804-A	0.4258	2E-11		0.02426785	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3p13		rs55921103-T	NR	3E-9		0.0124	[0.0083-0.0165] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3p13		rs55921103-T	NR	1E-8		0.0129	[0.0084-0.0174] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p13	MITF	rs55921103-T	0.649619	4E-13		0.017206084	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3p13	MITF	rs55921103-G	0.351105	5E-10		0.0136729	[0.0094-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3p13	MITF	rs55921103-G	0.351143	2E-10		0.0140216	[0.0097-0.0183] unit decrease	Affymetrix [NR] (imputed)	N
1117	chr3	69810293	69810294	rs55921103	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3p13	MITF	rs55921103-?	NR	3E-12		0.0188	[0.014-0.024] unit decrease	Affymetrix [5701386] (imputed)	N
1117	chr3	69816116	69816117	rs17006419	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3p13	MITF	rs17006419-C	0.773607	8E-6		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1117	chr3	69820781	69820782	rs12714757	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3p13	MITF	rs12714757-?	NR	1E-10		0.0356587	[0.025-0.047] unit decrease	Illumina [4804024] (imputed)	N
1117	chr3	69824092	69824093	rs78356356	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Chagas cardiomyopathy in Tripanosoma cruzi seropositivity	207 Brazilian ancestry cases, 306 Brazilian ancestry controls	NA	3p13	NR	rs78356356-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1117	chr3	69830673	69830674	rs9825958	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3p13	MITF	rs9825958-T	0.4156	1E-13		1.059	NR	Affymetrix [9154080] (imputed)	N
1117	chr3	69832233	69832234	rs11716109	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p13		rs11716109-G	NR	1E-19		0.0174	[0.014-0.021] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1117	chr3	69832233	69832234	rs11716109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p13		rs11716109-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1117	chr3	69835404	69835405	rs62250976	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p13	NR	rs62250976-G	0.228571	2E-10		0.01458	[0.01-0.019] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1117	chr3	69837534	69837535	rs113374742	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs113374742-C	0.274424	2E-10				Affymetrix, Illumina [24246363] (imputed)	N
1117	chr3	69840864	69840865	rs12637754	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Acetobacterales abundance in stool	5,959 Finnish ancestry individuals	NA	3p13		rs12637754-G	0.174072	2E-8		0.0188591	[0.012-0.025] unit decrease	Illumina [7980478] (imputed)	N
1117	chr3	69840864	69840865	rs12637754	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Acetobacteraceae abundance in stool	5,959 Finnish ancestry individuals	NA	3p13		rs12637754-G	0.174072	4E-8		0.0203502	[0.013-0.028] unit decrease	Illumina [7980478] (imputed)	N
1117	chr3	69841879	69841880	rs17006441	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p13	MITF	rs17006441-A	0.419336	3E-25		0.023351038	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr3	69841879	69841880	rs17006441	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p13	MITF	rs17006441-A		2E-19		0.02	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1117	chr3	69841879	69841880	rs17006441	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3p13	MITF	rs17006441-A	0.4209	4E-10		0.02257725	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1117	chr3	69842644	69842644	rs541867052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p13	MITF	rs541867052-GATGCTCATAGCATGCACCCTCTCCCA	0.218693	2E-9		0.016250065	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1117	chr3	69843536	69843537	rs6785461	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs6785461-A	0.615691	4E-23				Affymetrix, Illumina [24588908] (imputed)	N
1117	chr3	69843970	69843971	rs6777363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs6777363-G	0.340446	4E-30				Affymetrix, Illumina [24653286] (imputed)	N
1117	chr3	69843970	69843971	rs6777363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p13	NR	rs6777363-G	0.424035	1E-32		0.022228	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1117	chr3	69845193	69845194	rs7626717	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p13	MITF	rs7626717-G	0.426986	3E-26		0.023793576	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1117	chr3	69849834	69849835	rs62251009	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3p13		rs62251009-C	NR	2E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1117	chr3	69853800	69853801	rs1430611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p13	NR	rs1430611-C	0.448739	1E-34		0.022794	[0.019-0.026] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1117	chr3	69854586	69854587	rs1430609	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p13	NR	rs1430609-C	0.643804	1E-24		0.019581	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1117	chr3	69856826	69856827	rs7611020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p13	MITF	rs7611020-A	0.646139	2E-17		0.019842423	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1118	chr3	69868804	69868805	rs115154932	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p13	NR	rs115154932-A	0.0626243	4E-8		0.0791249	[0.051-0.107] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1118	chr3	69870759	69870760	rs1529584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p13		rs1529584-T	NR	1E-24		0.0207	[0.017-0.025] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1118	chr3	69870759	69870760	rs1529584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p13		rs1529584-T	NR	1E-19		0.0175	[0.014-0.021] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1118	chr3	69870774	69870775	rs1529583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs1529583-A	0.343647	6E-33				Affymetrix, Illumina [24558453] (imputed)	N
1118	chr3	69878087	69878088	rs1156255	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p13		rs1156255-C	NR	6E-14		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1118	chr3	69878252	69878253	rs9825822	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs9825822-A	0.340139	3E-43				Affymetrix, Illumina [24332387] (imputed)	N
1118	chr3	69879322	69879323	rs6805563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p13	NR	rs6805563-A	0.43049	6E-45		0.026183	[0.023-0.03] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1118	chr3	69879669	69879670	rs6805924	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p13	MITF	rs6805924-G	0.569451	5E-8		0.0109683	[0.007-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1118	chr3	69879758	69879759	rs6805945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p13	MITF	rs6805945-A	0.431207	5E-33		0.026613021	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1118	chr3	69881905	69881906	rs62252216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p13		rs62252216-?	NR	2E-32				NR [~ 8900000] (imputed)	N
1118	chr3	69893970	69893971	rs62252239	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p13	SLC45A3, NUCKS1, AC119673.1, RAB7L1, SLC41A1, PM20D1	rs62252239-?		3E-9				NR [7428630] (imputed)	N
1118	chr3	69893970	69893971	rs62252239	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p13	MITF	rs62252239-?		9E-9				NR [7428630] (imputed)	N
1118	chr3	69897449	69897450	rs57788691	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p13	NR	rs57788691-?	NR	4E-10	(white matter)			NR [9227495] (imputed)	N
1118	chr3	69898413	69898414	rs62253174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p13		rs62253174-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1118	chr3	69906230	69906231	rs62253176	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p13		rs62253176-G	0.18	2E-14		7.64	z score increase	Affymetrix [9061022] (imputed)	N
1118	chr3	69906266	69906267	rs62253177	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p13	NR	rs62253177-C	0.1907	8E-10				NR [9056863] (imputed)	N
1118	chr3	69906571	69906572	rs62253180	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	3p13	MITF	rs62253180-A	0.816541	3E-7		0.254563	[0.16-0.35] unit decrease	Affymetrix [8590397] (imputed)	N
1118	chr3	69909093	69909094	rs7623486	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Low density lipoprotein cholesterol levels	6,545 European ancestry individuals	NA	3p13		rs7623486-A	0.19	9E-7		0.18	[0.13-0.30] unit increase	Illumina [19468843] (imputed)	N
1118	chr3	69916636	69916637	rs2320172	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	3p13	MITF	rs2320172-T	0.9360949	1E-9				Affymetrix, Illumina [NR] (imputed)	N
1118	chr3	69925127	69925128	rs56038322	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p13	NR	rs56038322-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1118	chr3	69925127	69925128	rs56038322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p13		rs56038322-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1118	chr3	69930624	69930625	rs115000530	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs115000530-A	0.9451	1E-15		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1118	chr3	69950450	69950451	rs183783391	34724200	Marley AR	2021-11-01	Int J Cancer	Citrus-Gene interaction and melanoma risk in the UK Biobank.	Melanoma x citrus consumption interaction (2df)	1,563 European ancestry cases, 193,296 European ancestry controls	NA	3p13		rs183783391-T	0.013	4E-8				Affymetrix [9981017] (imputed)	N
1118	chr3	69963334	69963335	rs11711047	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	3p13	MITF	rs11711047-?	0.0	2E-11				Affymetrix [547296]	N
1119	chr3	69993312	69993313	rs13072665	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p13		rs13072665-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1119	chr3	69993312	69993313	rs13072665	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p13	Intergenic	rs13072665-A	0.0794	3E-13	(MTAG)	0.0178	[0.013-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1119	chr3	70010219	70010220	rs12639523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p13	Intergenic	rs12639523-A	0.2615	9E-10	(MTAG)	0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p13		rs149617956-A	0.0032235	3E-6		0.27833	[0.16-0.39] unit decrease	Affymetrix [15580782] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3p13		rs149617956-A	0.0032235	9E-6		0.26648	[0.15-0.38] unit decrease	Affymetrix [15580782] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34724200	Marley AR	2021-11-01	Int J Cancer	Citrus-Gene interaction and melanoma risk in the UK Biobank.	Melanoma x citrus consumption interaction (2df)	1,563 European ancestry cases, 193,296 European ancestry controls	NA	3p13		rs149617956-?	0.0035	2E-8				Affymetrix [9981017] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	3p13		rs149617956-?	NR	4E-9		0.0855076	[0.056-0.115] unit decrease	NR [9800000] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Cystatin C levels	437,846 European ancestry individuals	NA	3p13		rs149617956-?	NR	1E-16		0.132257	[0.1-0.16] unit increase	NR [9800000] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Creatinine levels	437,660 European ancestry individuals	NA	3p13		rs149617956-?	NR	2E-11		0.111571	[0.081-0.143] unit increase	NR [9800000] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	3p13	MITF	rs149617956-A	0.002	5E-25		2.6295033	NR	Affymetrix, Illumina [NR] (imputed)	N
1119	chr3	70014090	70014091	rs149617956	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3p13	MITF	rs149617956-A		3E-9		0.101	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1119	chr3	70028316	70028317	rs7630455	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p13	MITF	rs7630455-G	NR	2E-8		0.0165892	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1119	chr3	70061376	70061377	rs190948281	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Melanomas of skin (PheCode 172.11)	2,824 European ancestry cases, 453,524 European ancestry controls	NA	3p13		rs190948281-C	0.003199	2E-14		2.21	[1.64-2.78] unit increase	NR [11842647] (imputed)	N
1119	chr3	70061376	70061377	rs190948281	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Hair colour (natural, before greying): Dark brown (UKB data field 1747_4)	171,614 European ancestry cases, 283,550 European ancestry controls	NA	3p13		rs190948281-C	0.003533	2E-10		0.25	[0.17-0.33] unit decrease	NR [11842647] (imputed)	N
1119	chr3	70061376	70061377	rs190948281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p13	RP11-460N16.1	rs190948281-C	0.00389700000000004	2E-11		0.122704126	[0.087-0.158] unit decrease	Affymetrix [93095623] (imputed)	N
1119	chr3	70061376	70061377	rs190948281	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p13	RP11-460N16.1	rs190948281-C	0.00390100000000004	1E-9		0.11060099	[0.075-0.146] unit decrease	Affymetrix [93095623] (imputed)	N
1119	chr3	70061376	70061377	rs190948281	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	3p13	RP11-460N16.1	rs190948281-G	0.997598	2E-32				Affymetrix, Illumina [NR] (imputed)	N
1119	chr3	70110388	70110389	rs73104091	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p13	NR	rs73104091-T	0.0531	2E-9				NR [9056863] (imputed)	N
1119	chr3	70110388	70110389	rs73104091	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3p13	intergenic	rs73104091-T	0.051	2E-6		0.07	[0.041-0.099] unit decrease	Affymetrix [7947838] (imputed)	N
1119	chr3	70120615	70120616	rs9818964	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p13	NR	rs9818964-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1120	chr3	70159203	70159204	rs146572601	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p13	Intergenic	rs146572601-?		5E-6		2.64	[1.74-4.02]	Illumina [7645193] (imputed)	N
1120	chr3	70165697	70165698	rs116374079	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	3p13	NR	rs116374079-?		5E-6		28.8083	[16.52-41.1] unit decrease	NR [NR] (imputed)	N
1120	chr3	70224888	70224889	rs4334612	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	3p13	NR	rs4334612-T	0.3363	1E-6		0.1647	[0.099-0.231] unit decrease	Illumina [NR] (imputed)	N
1120	chr3	70251994	70251995	rs9836145	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3p13	Intergenic	rs9836145-?	NR	4E-7		2.39	[NR]	Affymetrix [492217] (imputed)	N
1120	chr3	70253692	70253693	rs56306882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs56306882-A	0.2741	5E-8		0.0086	[0.0055-0.0117] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1121	chr3	70259701	70259702	rs17006842	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p13	NR	rs17006842-?	NR	4E-6	(AA)	0.9617	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1121	chr3	70274092	70274093	rs191223340	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p13	Intergenic	rs191223340-?		3E-6		2.74	[1.80-4.18]	Illumina [7645193] (imputed)	N
1121	chr3	70274176	70274177	rs73117911	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p13	NR	rs73117911-G	0.0725646	9E-9		0.07778582	[0.051-0.104] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1121	chr3	70331706	70331707	rs4498002	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		3p13	NR	rs4498002-G	0.390667	9E-6		1.06961	[1.03997-1.10008]	Affymetrix [16499239] (imputed)	N
1121	chr3	70344018	70344019	rs113498618	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Leptospirales abundance in stool	5,959 Finnish ancestry individuals	NA	3p13		rs113498618-C	0.045976	5E-8		0.0373925	[0.024-0.051] unit increase	Illumina [7980478] (imputed)	N
1121	chr3	70344018	70344019	rs113498618	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Leptospirae abundance in stool	5,959 Finnish ancestry individuals	NA	3p13		rs113498618-C	0.045976	2E-8		0.0355772	[0.023-0.048] unit increase	Illumina [7980478] (imputed)	N
1122	chr3	70456495	70456496	rs2193551	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p13	Intergenic	rs2193551-T	0.338	1E-10	(MTAG)	0.0122	[0.0085-0.0159] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1122	chr3	70463329	70463330	rs1024889	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	3p13		rs1024889-A	NR	7E-22		10.67	[6.59-17.28]	Affymetrix [NR] (imputed)	N
1122	chr3	70463329	70463330	rs1024889	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	3p13	NR	rs1024889-G	0.28	6E-6	(males)	0.12	[NR] kg increase	Illumina [318237]	N
1122	chr3	70470833	70470834	rs17732997	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	3p13	NR	rs17732997-C	NR	5E-7		0.636	unit increase	Affymetrix [14661600] (imputed)	N
1122	chr3	70481376	70481377	rs2111583	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	FOXP1	rs2111583-?	NR	1E-6	(dimethylglycine)	0.1624348	[0.096-0.228] unit increase	Affymetrix [at least 2500000] (imputed)	N
1122	chr3	70488787	70488788	rs115694474	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	3p13	MDFIC2	rs115694474-T	0.799	2E-8		1.06844	[1.05-1.09]	Affymetrix, Illumina [7549318] (imputed)	N
1122	chr3	70502182	70502183	rs7619082	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p13	Intergenic	rs7619082-C	0.3718	2E-11		0.0135	[0.0096-0.0174] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1122	chr3	70511918	70511919	rs4974291	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs4974291-T	0.7598	1E-10	(conditional-joint)	0.0106	[0.0075-0.0137] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1123	chr3	70520916	70520917	rs12494424	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p13	NR	rs12494424-G	0.9582	2E-8		0.0656	[0.043-0.089] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1123	chr3	70526304	70526305	rs62256284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs62256284-T	0.2093	1E-10		0.0111	[0.0078-0.0144] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1123	chr3	70526304	70526305	rs62256284	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p13	Intergenic	rs62256284-T	0.2093	1E-10	(MTAG)	0.0104	[0.0073-0.0135] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr3	70539558	70539559	rs11915371	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p13	NR	rs11915371-A	0.188867	7E-12		0.06183654	[0.044-0.08] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1123	chr3	70539558	70539559	rs11915371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p13	NA	rs11915371-A	0.8019	2E-13		0.0154	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1123	chr3	70539558	70539559	rs11915371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p13	NA	rs11915371-A	0.8019	2E-13		0.0154	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1123	chr3	70540346	70540347	rs76267866	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs76267866-A	0.7926	2E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1123	chr3	70540764	70540765	rs12487131	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p13		rs12487131-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1123	chr3	70558472	70558473	rs61604727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p13		rs61604727-C	NR	6E-9		0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1123	chr3	70574931	70574932	rs56322472	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p13	Intergenic	rs56322472-T	0.3295	5E-11	(MTAG)	0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr3	70593080	70593081	rs11708540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p13		rs11708540-A	NR	1E-9		0.0187	[0.013-0.025] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1123	chr3	70593080	70593081	rs11708540	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p13	FOXP1	rs11708540-G	0.84247	2E-8		0.0106156	[0.0069-0.0143] unit decrease	Affymetrix [12370749]	N
1123	chr3	70593080	70593081	rs11708540	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p13	NR	rs11708540-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1123	chr3	70594974	70594975	rs17007397	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p13	MITF, FOXP1	rs17007397-C	0.5801	5E-8		1.0233688		Affymetrix [11880941] (imputed)	N
1123	chr3	70612393	70612394	rs56217315	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p13	Intergenic	rs56217315-T	0.2251	2E-10	(MTAG)	0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1123	chr3	70626359	70626360	rs7628219	22754043	Byrne EM	2012-07-01	Sleep	A genome-wide association study of caffeine-related sleep disturbance: confirmation of a role for a common variant in the adenosine receptor.	Insomnia (caffeine-induced)	2,402 European ancestry individuals from 1,470 families	NA	3p13	RP11-430J3.1	rs7628219-T	0.18	2E-6		1.61	[1.33-1.96]	Illumina [2380486] (imputed)	N
1123	chr3	70631017	70631018	rs10511002	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p13	NR	rs10511002-A	0.290003	3E-9		0.00813403	[0.0055-0.0108] unit increase	Affymetrix [16585854] (imputed)	N
1123	chr3	70631017	70631018	rs10511002	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p13	NR	rs10511002-A	0.290003	4E-8		0.00833593	[0.0053-0.0114] unit increase	Affymetrix [16585866] (imputed)	N
1123	chr3	70631589	70631590	rs9877225	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs9877225-T	0.7617	4E-8		0.009	[0.0059-0.0121] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1124	chr3	70655367	70655368	rs7611165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p13	Intergenic	rs7611165-T	0.2044	2E-11		0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1124	chr3	70725901	70725902	rs147786325	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3p13	HMGB1P36	rs147786325-T	NR	2E-6	(sleep latency, weekdays)	0.9523	[0.56-1.34] unit increase	Affymetrix [7141204] (imputed)	N
1124	chr3	70764743	70764744	rs17737336	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p13	NR	rs17737336-C	0.237035	7E-11		0.01727003	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1124	chr3	70764743	70764744	rs17737336	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p13	NR	rs17737336-C	0.233505	3E-10		0.014039	[0.0097-0.0184] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1124	chr3	70764743	70764744	rs17737336	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p13		rs17737336-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1125	chr3	70796695	70796696	rs13091518	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p13	NR	rs13091518-T	NR	3E-8		1.039	[1.02-1.05]	Affymetrix, Illumina [29235255] (imputed)	N
1125	chr3	70807660	70807661	rs6763648	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p13	NR	rs6763648-T	0.519	1E-13		0.00804467	[0.0059-0.0102] unit decrease	NR [9732723] (imputed)	N
1125	chr3	70850460	70850461	rs2117760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p13		rs2117760-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1125	chr3	70852705	70852706	rs6549358	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p13	NR	rs6549358-G	NR	5E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1125	chr3	70871089	70871090	rs1002202	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p13		rs1002202-G	0.577	5E-17		0.01	[0.008-0.012] unit increase	NR [NR] (imputed)	N
1125	chr3	70873277	70873278	rs7618715	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p13	FOXP1	rs7618715-G	0.580823	2E-9		0.0125781	[0.0085-0.0167] unit decrease	NR [16516521] (imputed)	N
1125	chr3	70881428	70881429	rs13078509	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p13	NR	rs13078509-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1125	chr3	70881428	70881429	rs13078509	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p13		rs13078509-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1125	chr3	70890287	70890288	rs2196356	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p13	NR	rs2196356-C	0.288886	2E-11	(Conditioned on chr3:71064431)	0.018772762	[0.013-0.024] unit decrease	NR [~ 10000000] (imputed)	N
1125	chr3	70907065	70907066	rs78670122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p13		rs78670122-?	NR	5E-15				NR [~ 8900000] (imputed)	N
1125	chr3	70909493	70909494	rs2597301	34187846	Ong JS	2021-06-29	Gut	Multitrait genetic association analysis identifies 50 new risk loci for gastro-oesophageal reflux, seven new loci for Barrett's oesophagus and provides insights into clinical heterogeneity in reflux diagnosis.	Barrett's esophagus	13,358 European ancestry cases, 43,071 European ancestry controls	24,099 cases, 1,484,025 controls	3p13	NR	rs2597301-C	0.31	3E-13		0.119	unit increase	NR [2324712] (imputed)	N
1125	chr3	70909493	70909494	rs2597301	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3p13	FOXP1	rs2597301-?	0.321	6E-14		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1126	chr3	70911270	70911271	rs2077610	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	ENSG00000221382	rs2077610-A	NR	5E-8		5.462	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1126	chr3	70913292	70913293	rs1522554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p13		rs1522554-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1126	chr3	70917638	70917639	rs4676893	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Gastroesophageal reflux disease	80,265 European and unknown ancestry cases, 305,011 European and unknown ancestry controls	NA	3p13	FOXP1	rs4676893-A	NR	2E-10		1.0394586	[1.0272-1.0516]	Affymetrix, Illumina [up to 7600000] (imputed)	N
1126	chr3	70917638	70917639	rs4676893	31527586	An J	2019-09-16	Nat Commun	Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases.	Barrett's esophagus  or Esophageal adenocarcinoma	8,998 European and unknown ancestry Barrett's esophagus cases, 4,680 European and unknown ancestry esophageal adenocarcinoma cases, 19,247 European and unknown ancestry controls	NA	3p13	FOXP1	rs4676893-?	NR	8E-12		0.1139	[0.081-0.147] unit increase	Affymetrix [up to 7600000] (imputed)	N
1126	chr3	70922561	70922562	rs2597305	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p13	NR	rs2597305-G	0.45356	7E-10		0.00522057	[0.0036-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
1126	chr3	70928929	70928930	rs2687201	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Esophageal adenocarcinoma	1,516 European ancestry cases, 3,209 European ancestry controls	874 European ancestry cases, 6,911 European ancestry controls	3p13	FOXP1	rs2687201-T	0.303	6E-7		1.2	[1.12-1.29]	Illumina [922031]	N
1126	chr3	70928929	70928930	rs2687201	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	3p13	FOXP1	rs2687201-T	0.303	5E-9		1.18	[1.12-1.25]	Illumina [922031]	N
1126	chr3	70928929	70928930	rs2687201	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Barrett's esophagus	2,416 European ancestry cases, 3,206 European ancestry controls	759 European ancestry cases, 6,911 European ancestry controls	3p13	FOXP1	rs2687201-T	0.303	2E-6		1.18	[1.10-1.26]	Illumina [922031]	N
1126	chr3	70929982	70929983	rs2687202	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Barrett's esophagus  or Esophageal adenocarcinoma	6,167 European ancestry Barrett's oesophagus cases, 4,112 European ancestry esophageal adenocarcinoma cases, 17,159 European ancestry controls	NA	3p13	FOXP1	rs2687202-T		2E-9		1.13	[1.08-1.17]	Illumina [11951684] (imputed)	N
1126	chr3	70932701	70932702	rs143623119	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3p13	FOXP1	rs143623119-A	0.0128125614716781	9E-6	(O_Lactobacillales_HB)	1.30895	[0.73-1.89] unit decrease	Illumina [7711310] (imputed)	N
1126	chr3	70936711	70936712	rs1852922	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p13	FOXP1	rs1852922-G	0.309889	6E-9		0.0123805	[0.0082-0.0166] unit decrease	Affymetrix [NR] (imputed)	N
1126	chr3	70943142	70943143	rs13097265	33608531	Wu Y	2021-02-19	Nat Commun	GWAS of peptic ulcer disease implicates Helicobacter pylori infection, other gastrointestinal disorders and depression.	Gastroesophageal reflux disease, peptic ulcer disease and/or corresponding medications and treatment	90,175 European ancestry cases, 366,152 European ancestry controls	NA	3p13	NR	rs13097265-G	0.71	8E-9		0.97		NR [8546065] (imputed)	N
1126	chr3	70950690	70950691	rs34552401	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p13	SAMMSON, FOXP1	rs34552401-A	0.7005	9E-11		0.098	[0.068-0.128] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1126	chr3	70954272	70954273	rs11919835	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs11919835-C	0.3857	8E-10		0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1126	chr3	70954511	70954512	rs13093886	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3p13	NR	rs13093886-A	0.282	2E-8		0.010814633	[0.0071-0.0146] unit decrease	Affymetrix [NR] (imputed)	N
1126	chr3	70965043	70965044	rs13065564	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs13065564-T	0.694557	1E-15		0.0771326	[0.058-0.097] decrease	Affymetrix [11014269] (imputed)	N
1126	chr3	70965424	70965425	rs34942426	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	3p13	FOXP1	rs34942426-T	0.3034	2E-8	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1126	chr3	70965424	70965425	rs34942426	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	3p13	FOXP1	rs34942426-T	0.3034	4E-7		0.1423	NR mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1126	chr3	70967741	70967741	rs71621907	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p13	SAMMSON, FOXP1	rs71621907-C	0.7046	3E-12		0.108	[0.078-0.138] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1126	chr3	70968430	70968431	rs13094887	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3p13	NR	rs13094887-T	0.301	3E-15		0.0114029	[0.0086-0.0142] unit decrease	NR [~ 9732723] (imputed)	N
1126	chr3	70968430	70968431	rs13094887	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3p13	NR	rs13094887-T	0.301	9E-11		0.010309671	[0.0072-0.0134] unit decrease	NR [~ 10000000] (imputed)	N
1126	chr3	70972465	70972466	rs12636552	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p13	MITF, FOXP1	rs12636552-A		5E-9		0.241	unit increase	Affymetrix [at least 2696785] (imputed)	N
1126	chr3	70972465	70972466	rs12636552	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p13	MITF, FOXP1	rs12636552-A		1E-7		0.144	unit increase	Affymetrix [at least 2696785] (imputed)	N
1126	chr3	70985058	70985059	rs11928769	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p13	FOXP1	rs11928769-?		4E-8				Affymetrix, Illumina [NR] (imputed)	N
1126	chr3	70994005	70994006	rs9847154	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Anorexia nervosa vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	16,992 anorexia nervosa cases, 4,819 Tourette's syndrome cases	NA	3p13		rs9847154-?	NR	4E-9		0.0214	NR unit increase	NR [5508374] (imputed)	N
1126	chr3	71019749	71019750	rs9874207	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	3p13	FOXP1	rs9874207-C	0.49	2E-8		1.08	[1.06-1.1]	Affymetrix, Illumina [at least 8111819] (imputed)	N
1126	chr3	71020489	71020490	rs17651978	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Attention deficit hyperactivity disorder	930 European ancestry trios	NA	3p13	FOXP1	rs17651978-?	NR	6E-6	(count)			Perlegen [429981]	N
1126	chr3	71025075	71025076	rs6781897	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p13	NR	rs6781897-G	0.363	1E-13		0.0113644	[0.0084-0.0144] unit increase	NR [9732723] (imputed)	N
1126	chr3	71034747	71034748	rs4676964	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p13	NA	rs4676964-T		7E-14		0.013632	[0.01-0.017] unit increase	Illumina [13288253] (imputed)	N
1126	chr3	71034747	71034748	rs4676964	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Beef consumption	335,576 European ancestry individuals	NA	3p13	FOXP1	rs4676964-?	NR	2E-9		0.0150122	[0.01-0.02] unit decrease	Affymetrix [25921788] (imputed)	N
1126	chr3	71034747	71034748	rs4676964	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p13	FOXP1	rs4676964-T	0.5117	8E-18		0.022169843	[0.017-0.027] unit increase	Affymetrix [~ 11515000] (imputed)	N
1126	chr3	71034747	71034748	rs4676964	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p13		rs4676964-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1126	chr3	71036993	71036994	rs6802472	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p13	FOXP1	rs6802472-A	0.7825	4E-9		0.013801802	[0.0092-0.0184] unit increase	Illumina [9339358] (imputed)	N
1127	chr3	71055161	71055162	rs13093086	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3p13	FOXP1	rs13093086-A	0.5078	5E-12		0.016306782	[0.012-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1127	chr3	71055161	71055162	rs13093086	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p13	FOXP1	rs13093086-A	0.505	3E-12		0.0082	[0.0058-0.0106] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1127	chr3	71055161	71055162	rs13093086	24002674	Ozel AB	2013-09-04	Hum Genet	Genome-wide association study and meta-analysis of intraocular pressure.	Intraocular pressure	2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls	NA	3p13	FOXP1	rs13093086-A	0.49	5E-6		0.57	[0.30-0.84] mmHg decrease	Illumina [466573]	N
1127	chr3	71060639	71060640	rs11720703	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p13		rs11720703-C	0.471	3E-27		0.013	[0.011-0.015] unit decrease	NR [NR] (imputed)	N
1127	chr3	71060639	71060640	rs11720703	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p13	FOXP1	rs11720703-T		1E-8		1.02	[NR]	Affymetrix [up to 79000000] (imputed)	N
1127	chr3	71064430	71064431	rs11128203	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p13	FOXP1	rs11128203-A	0.5344	1E-13		0.016751751	[0.012-0.021] unit increase	Affymetrix [11514463] (imputed)	N
1127	chr3	71064430	71064431	rs11128203	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p13	NR	rs11128203-A	0.53	6E-22		0.010471	[0.0083-0.0126] unit increase	NR [9732723] (imputed)	N
1127	chr3	71064430	71064431	rs11128203	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p13	NR	rs11128203-A	0.53	1E-15		0.020405967	[0.015-0.025] unit increase	NR [~ 10000000] (imputed)	N
1127	chr3	71065946	71065947	rs3846030	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p13	NR	rs3846030-T	0.323062	1E-9		0.04571442	[0.031-0.06] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1127	chr3	71065946	71065947	rs3846030	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	NR	rs3846030-?	NR	7E-6		4.499	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1127	chr3	71072599	71072600	rs116036142	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p13	FOXP1	rs116036142-T	0.019	2E-6		3.04	[1.93-4.79]	Illumina [8672852] (imputed)	N
1127	chr3	71115750	71115751	rs7616330	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	3p13	NR	rs7616330-A	0.22	6E-6		1.72	[0.99-2.45] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1127	chr3	71129878	71129879	rs17008195	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p13	NR	rs17008195-?	NR	6E-7		0.0087606	[0.0053-0.0122] unit increase	Affymetrix [805426] (imputed)	N
1127	chr3	71134325	71134326	rs80190719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p13		rs80190719-T	NR	2E-13		0.0106	[0.0079-0.0133] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1127	chr3	71153889	71153890	rs80060485	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	3p13	FOXP1	rs80060485-C	0.07	3E-15		1.44	[1.32-1.58]	Affymetrix, Illumina [7891602] (imputed)	N
1127	chr3	71160360	71160361	rs58294838	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p13	FOXP1	rs58294838-C	0.8226	5E-12		0.020381948	[0.015-0.026] unit increase	Affymetrix [11514463] (imputed)	N
1128	chr3	71175494	71175495	rs2593855	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	3p13	FOXP1	rs2593855-C	0.663	3E-9		1.09	1.06-1.11	Illumina [9725440] (imputed)	N
1128	chr3	71175494	71175495	rs2593855	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3p13	FOXP1	rs2593855-?		7E-6				Illumina [9560910] (imputed)	N
1128	chr3	71182446	71182447	rs77877421	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3p13	FOXP1	rs77877421-A	0.94	1E-11		0.03	unit decrease	Affymetrix [8928767] (imputed)	N
1128	chr3	71193196	71193197	rs1568555	28644415	Guenard F	2017-06-23	Nutrients	Genome-Wide Association Study of Dietary Pattern Scores.	Prudent dietary pattern	141 individuals	NA	3p13	FOXP1	rs1568555-?		9E-6				Illumina [2668805]	N
1128	chr3	71200156	71200157	rs7647909	33106285	Lopez-Isac E	2020-10-26	Ann Rheum Dis	Combined genetic analysis of juvenile idiopathic arthritis clinical subtypes identifies novel risk loci, target genes and key regulatory mechanisms.	Arthritis (juvenile idiopathic)	3,305 European ancestry cases, 9,196 European ancestry controls	2,751 European ancestry cases, 15,886 European ancestry controls	3p13	FOXP1	rs7647909-G	NR	2E-9		1.17	[1.11-1.23]	Illumina [7461261] (imputed)	N
1128	chr3	71206974	71206975	rs2321503	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p13		rs2321503-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1128	chr3	71230513	71230514	rs4677030	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	3p13	NR	rs4677030-?	NR	2E-8	(Quadrant II (Nose), Segment 23)	0.024597496	NR unit decrease	NR [7417619] (imputed)	N
1128	chr3	71231743	71231744	rs9310211	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 23)	4,680 European ancestry individuals	3,566 European ancestry individuals	3p13		rs9310211-A	0.417900697	5E-22				Illumina [7417619] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p13		rs7372960-C	NR	9E-22		0.0256	[0.02-0.031] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p13		rs7372960-C	NR	2E-21		0.0253	[0.02-0.031] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3p13	FOXP1	rs7372960-T	0.75	4E-8				NR [> 9500000] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p13	FOXP1	rs7372960-T	NR	4E-7		1.065	[1.04-1.09]	Illumina [6627481] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p13	FOXP1	rs7372960-T	NR	2E-7	(EA)	1.0693	[1.04-1.09]	Illumina [6627481] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p13	intergenic	rs7372960-T	NR	3E-7		1.064	[1.04-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1128	chr3	71254750	71254751	rs7372960	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p13	NR	rs7372960-T	NR	7E-8		1.07	[NR]	Illumina [7158791] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p13		rs17699658-T	NR	3E-22		0.0234	[0.019-0.028] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p13	FOXP1	rs17699658-T	0.220082	4E-26		0.028396439	[0.023-0.034] unit increase	Affymetrix [93095623] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p13	FOXP1	rs17699658-T	0.220143	7E-30		0.030804388	[0.025-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p13	FOXP1	rs17699658-T	0.220117	2E-39		0.035929073	[0.031-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p13	FOXP1	rs17699658-T	0.220123	2E-30		0.0278611	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p13	FOXP1	rs17699658-T	0.220137	4E-27		0.028857611	[0.024-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs17699658-T	0.174553	3E-34				Affymetrix, Illumina [24332387] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p13	NR	rs17699658-T	0.219254	3E-36		0.028361	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs17699658-T	0.180537	5E-31				Affymetrix, Illumina [24246363] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p13	NR	rs17699658-T	0.219276	2E-32		0.026251	[0.022-0.031] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs17699658-T	0.179078	3E-26				Affymetrix, Illumina [20825802] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p13	NR	rs17699658-T	0.221152	4E-28		0.025756	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p13	NR	rs17699658-T	0.218947	2E-10		0.014228	[0.0098-0.0186] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p13		rs17699658-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p13		rs17699658-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3p13	FOXP1	rs17699658-T	0.223	7E-14		0.0325114	[0.024-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3p13	FOXP1	rs17699658-T	0.2231	6E-13		0.03105527	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1128	chr3	71256308	71256309	rs17699658	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p13	FOXP1	rs17699658-T	0.223	6E-12		0.02972727	[0.021-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1128	chr3	71258581	71258582	rs114564188	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	FOXP1	rs114564188-G	0.957468	4E-8	(20 ms)	0.0776494	[0.051-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1128	chr3	71258581	71258582	rs114564188	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	FOXP1	rs114564188-G	0.957468	2E-8	(18 ms)	0.0782279	[0.051-0.105] unit decrease	Affymetrix [10000000] (imputed)	N
1128	chr3	71261182	71261183	rs4677597	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs4677597-A	0.324999	4E-10				Affymetrix, Illumina [24558453] (imputed)	N
1128	chr3	71262822	71262823	rs192875327	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	NR	rs192875327-?	NR	3E-6		4.685	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1128	chr3	71263235	71263236	rs12492363	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p13	NR	rs12492363-A	0.404394	2E-11		0.012661	[0.009-0.0163] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1128	chr3	71300566	71300567	rs17008402	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p13	FOXP1	rs17008402-G	0.31	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1129	chr3	71330594	71330595	rs1288822	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3p13		rs1288822-G	0.575888	2E-8		0.0410198	[0.026-0.056] decrease	Affymetrix [NR]	N
1129	chr3	71331363	71331364	rs1653969	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3p13	FOXP1	rs1653969-?	NR	9E-7	(AA)	0.037	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1129	chr3	71352090	71352091	rs12374070	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	EIF4E3	rs12374070-?	NR	1E-6	(3-phosphoglyceric acid)	0.29134074	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1129	chr3	71352122	71352123	rs9841280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p13		rs9841280-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1129	chr3	71355239	71355240	rs35592432	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3p13		rs35592432-C	NR	2E-30		0.0882	[0.073-0.103] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1129	chr3	71355239	71355240	rs35592432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p13	FOXP1	rs35592432-C	0.027346	4E-46		0.10208176	[0.088-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1129	chr3	71355239	71355240	rs35592432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3p13	NR	rs35592432-C	0.027242	5E-11		0.039902	[0.028-0.052] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1129	chr3	71355239	71355240	rs35592432	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3p13	NR	rs35592432-C	0.027317	2E-68		0.108539	[0.096-0.121] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1129	chr3	71355239	71355240	rs35592432	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3p13	FOXP1	rs35592432-C	0.0279	4E-20		0.1099726	[0.087-0.133] unit increase	Affymetrix [~ 2500000] (imputed)	N
1129	chr3	71362231	71362232	rs142346759	32066696	Dalvie S	2020-01-27	Transl Psychiatry	Genomic influences on self-reported childhood maltreatment.	Childhood maltreatment	124,711 European ancestry individuals	26,290 European ancestry individuals	3p13	FOXP1	rs142346759-?	NR	1E-8		5.674	NR z score increase	Affymetrix, Illumina [at least 800000] (imputed)	N
1129	chr3	71365664	71365665	rs17655548	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p13	FOXP1, EIF4E3	rs17655548-A	0.2143	1E-8		0.0118261	[0.0078-0.0159] unit decrease	Affymetrix [11880941] (imputed)	N
1129	chr3	71380668	71380669	rs13061869	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p13	FOXP1	rs13061869-T	0.18108	2E-12		0.020351835	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3p13		rs71298382-A	0.973	5E-12				Affymetrix [10369434] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3p13		rs71298382-A	0.973	2E-18				Affymetrix [10369434] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3p13	FOXP1	rs71298382-G	0.027196	3E-29		0.08046209	[0.066-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3p13	FOXP1	rs71298382-G	0.027183	2E-35		0.08930639	[0.075-0.103] unit increase	Affymetrix [93095623] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs71298382-G	0.0267815	2E-64				Affymetrix, Illumina [23472807] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	3p13	FOXP1	rs71298382-G	0.0286	8E-11		0.07561602	[0.053-0.098] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1129	chr3	71382066	71382067	rs71298382	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3p13	FOXP1	rs71298382-G	0.0286	2E-16		0.09547253	[0.073-0.118] unit increase	Affymetrix [~ 2500000] (imputed)	N
1129	chr3	71383378	71383379	rs11128212	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p13	Intergenic	rs11128212-T	0.4283	4E-9	(MTAG)	0.0078	[0.0053-0.0103] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1129	chr3	71389141	71389142	rs1300170	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	3p13	NR	rs1300170-?	NR	4E-6		0.2017	[0.11-0.29] unit decrease	Illumina [at least 560000] (imputed)	N
1129	chr3	71407889	71407890	rs4677611	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p13	FOXP1	rs4677611-T	0.4877	3E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1129	chr3	71414044	71414045	rs13072512	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p13	NR	rs13072512-G	0.576619429209469	6E-6	(IGP23)	0.1484	[0.084-0.212] unit increase	Illumina [~ 2500000] (imputed)	N
1129	chr3	71418326	71418327	rs4452296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p13		rs4452296-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1129	chr3	71422211	71422212	rs11714777	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	EIF4E3	rs11714777-?	NR	9E-6	(taurocholate)	0.69637203	[0.39-1] unit increase	Affymetrix [at least 2500000] (imputed)	N
1129	chr3	71422229	71422230	rs181732329	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p13	FOXP1	rs181732329-A	0.00787599999999999	1E-11		0.08655545	[0.061-0.112] unit increase	Affymetrix [93095623] (imputed)	N
1129	chr3	71426418	71426419	rs831070	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3p13	FOXP1	rs831070-A	0.307255	5E-16		0.01989094	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1129	chr3	71432138	71432139	rs6549387	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3p13	NR	rs6549387-T	NR	2E-6	(random effect)	1.08	NR	NR [6904914] (imputed)	N
1130	chr3	71435954	71435955	rs1567084	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p13	NR	rs1567084-A	0.4981	2E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1130	chr3	71435954	71435955	rs1567084	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p13	NA	rs1567084-A	0.4981	5E-8	(Male)	1.055	[1.04-1.07]	Affymetrix, Illumina [NR] (imputed)	N
1130	chr3	71437130	71437131	rs66535358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p13		rs66535358-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1130	chr3	71438033	71438034	rs1288524	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	EIF4E3	rs1288524-?	NR	3E-6	(dimethylglycine)	0.7165881	[0.41-1.02] unit increase	Affymetrix [at least 2500000] (imputed)	N
1130	chr3	71439471	71439472	rs9815974	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p13	FOXP1	rs9815974-A	0.664524	2E-11		0.015795495	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1130	chr3	71461226	71461227	rs7647190	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p13	FOXP1	rs7647190-T	0.248	1E-9		0.0452	[0.031-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1130	chr3	71463898	71463899	rs35956082	29364747	Jonsson L	2018-01-01	J Dent Res	Rare and Common Variants Conferring Risk of Tooth Agenesis.	Tooth agenesis (maxillary lateral incisors)	600 Icelandic ancestry cases, 338,554 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	102 European ancestry cases, 204 European ancestry controls, 32 European and other ancestry cases, 2,696 European and other ancestry controls	3p13	FOXP1	rs35956082-A	0.748	1E-11		1.92	[1.59-2.32]	Illumina [NR] (imputed)	N
1130	chr3	71464334	71464335	rs13063872	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	3p13	intergenic	rs13063872-?	0.93	9E-6		1.25	[1.12-1.37]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1130	chr3	71469844	71469845	rs1864896	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p13		rs1864896-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1130	chr3	71472546	71472547	rs7630905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p13		rs7630905-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1130	chr3	71475571	71475572	rs7640269	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p13	FOXP1	rs7640269-A	0.721671	4E-9		0.014813918	[0.0099-0.0197] unit increase	Affymetrix [93095623] (imputed)	N
1130	chr3	71482839	71482840	rs56151722	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	FOXP1	rs56151722-A	NR	9E-10		6.126	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1130	chr3	71483083	71483084	rs62246017	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	3p13	FOXP1, EIF4E3	rs62246017-A	0.325	2E-9		0.07	[0.05-0.09] unit increase	NR [13607369] (imputed)	N
1130	chr3	71483083	71483084	rs62246017	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p13	NR	rs62246017-A	0.323	1E-10		0.00755484	[0.0053-0.0099] unit decrease	NR [9732723] (imputed)	N
1130	chr3	71483083	71483084	rs62246017	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p13	NR	rs62246017-A	0.322639	3E-9	(Conditioned on chr3:70890288, chr3:71064431)	0.016169492	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
1130	chr3	71483083	71483084	rs62246017	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p13	NR	rs62246017-A	0.315	1E-8		0.00904035	[0.0059-0.0121] unit increase	NR [9732723] (imputed)	N
1130	chr3	71483083	71483084	rs62246017	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	3p13	FOXP1	rs62246017-A	0.33	1E-8		1.11	[1.07-1.16]	Affymetrix [9610468] (imputed)	N
1130	chr3	71498560	71498561	rs55716899	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3p13		rs55716899-T	0.572881	7E-9		0.0563148	[0.038-0.074] increase	Affymetrix [11014269] (imputed)	N
1130	chr3	71498560	71498561	rs55716899	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	3p13	FOXP1	rs55716899-?	NR	1E-10		0.00202494	[-0.00283-0.00688] unit decrease	Affymetrix [25921788] (imputed)	N
1130	chr3	71498560	71498561	rs55716899	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	3p13	FOXP1	rs55716899-?	NR	1E-10		0.0159325	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1130	chr3	71498981	71498982	rs12492180	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs12492180-T	0.593955	1E-10				Affymetrix, Illumina [24649327] (imputed)	N
1130	chr3	71499400	71499401	rs17718444	30643255	Kristjansson RP	2019-01-14	Nat Genet	A loss-of-function variant in ALOX15 protects against nasal polyps and chronic rhinosinusitis.	Nasal polyps	86 European ancestry whole-genome sequenced cases, 4,280 European ancestry cases, 13,941 European ancestry whole-genome sequenced controls, 700,740 European ancestry controls	NA	3p13	FOXP1	rs17718444-C	0.7	1E-11		1.1764705	[1.12-1.23]	Affymetrix, Illumina [up to 37123566] (imputed)	N
1130	chr3	71503478	71503479	rs11707890	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p13	NR	rs11707890-?	NR	2E-11	(left superior parietal)			NR [9227495] (imputed)	N
1130	chr3	71503478	71503479	rs11707890	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	3p13	FOXP1	rs11707890-G	0.43453	3E-34		1.1111112	[1.09-1.12]	Affymetrix [7600000] (imputed)	N
1130	chr3	71503478	71503479	rs11707890	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		3p13	FOXP1	rs11707890-T	NR	1E-10		1.1235955	[1.09-1.18]	Affymetrix [5734850] (imputed)	N
1130	chr3	71509082	71509083	rs56146007	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	3p13	FOXP1	rs56146007-G		3E-6		1.2195122	[NR]	Illumina [up to 9464381] (imputed)	N
1130	chr3	71509777	71509778	rs55688819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3p13		rs55688819-T	NR	5E-9		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1130	chr3	71517526	71517527	rs11708920	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	3p13	FOXP1	rs11708920-T	0.478948	3E-29		0.12225858	[0.1-0.14] unit increase	Affymetrix [7260263] (imputed)	N
1130	chr3	71517749	71517750	rs13100114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3p13	FOXP1	rs13100114-C	0.20265	2E-9		0.01648612	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1130	chr3	71522177	71522178	rs35540156	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	3p13	FOXP1	rs35540156-G	0.464613	2E-37		1.1111112	[1.09-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1130	chr3	71523092	71523093	rs36023390	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	3p13	FOXP1	rs36023390-C	0.63	2E-8		1.16	[1.10-1.22]	Affymetrix, Illumina [7891602] (imputed)	N
1130	chr3	71528942	71528943	rs12487658	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3p13	FOXP1	rs12487658-T	0.802405	3E-11		0.018544544	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1130	chr3	71528942	71528943	rs12487658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs12487658-T	0.697022	8E-11				Affymetrix, Illumina [23114412] (imputed)	N
1130	chr3	71528942	71528943	rs12487658	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3p13	NR	rs12487658-T	0.801636	2E-12		0.017015	[0.012-0.022] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1130	chr3	71528942	71528943	rs12487658	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3p13	NR	rs12487658-?	NR	7E-6				Illumina [7427422] (imputed)	N
1130	chr3	71530345	71530346	rs9828629	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3p13	FOXP1	rs9828629-G	0.64	2E-10		1.08		Illumina [161311]	N
1130	chr3	71531466	71531467	rs35483362	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs35483362-T	0.5219	3E-22	(conditional-joint)	0.0137	[0.011-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1130	chr3	71532112	71532113	rs6805189	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3p13		rs6805189-T	NR	4E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1130	chr3	71532112	71532113	rs6805189	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p13	FOXP1	rs6805189-T	0.52	5E-8	(EA)	1.0309278	[1.01-1.05] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p13		rs62247166-T	0.5	3E-40		13.28	z score increase	Affymetrix [9061022] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p13		rs62247166-T	0.5	7E-25		10.3	z score increase	Affymetrix [9061022] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p13		rs62247166-T	0.5	5E-26		10.55	z score increase	Affymetrix [9061022] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p13	NR	rs62247166-T	0.4791	1E-17				NR [9056863] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p13	NR	rs62247166-T	0.4791	1E-17				NR [9056863] (imputed)	N
1130	chr3	71532737	71532738	rs62247166	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p13	FOXP1	rs62247166-?		9E-9				NR [7428630] (imputed)	N
1130	chr3	71535337	71535338	rs9878602	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3p13	FOXP1	rs9878602-T	NR	2E-18		1.1002	NR	Affymetrix, Illumina [8278136] (imputed)	N
1130	chr3	71542278	71542279	rs73093445	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p13		rs73093445-?	NR	2E-25		1.11982	[1.1-1.14]	NR [685523]	N
1130	chr3	71542278	71542279	rs73093445	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	3p13		rs73093445-?	NR	4E-7		1.03574	[1.02-1.05]	NR [688737]	N
1130	chr3	71544613	71544614	rs7623765	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p13		rs7623765-?	NR	3E-9				NR [9705931] (imputed)	N
1130	chr3	71545169	71545170	rs11720523	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p13	NR	rs11720523-C	0.436382	2E-8		0.035462912	[0.023-0.048] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1130	chr3	71545169	71545170	rs11720523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p13	Intergenic	rs11720523-A	0.4298	8E-16	(MTAG)	0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1130	chr3	71545169	71545170	rs11720523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p13	Intergenic	rs11720523-A	0.4298	2E-8		0.0162	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1130	chr3	71545169	71545170	rs11720523	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p13	NR	rs11720523-A	NR	4E-11		6.608	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1130	chr3	71545169	71545170	rs11720523	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	FOXP1	rs11720523-A	NR	2E-8		5.656	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1130	chr3	71545797	71545798	rs62247034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Nasal polyps	5,093 European ancestry cases, 444,966 European ancestry controls, 160 East Asian ancestry cases, 151,846 East Asian ancestry controls	NA	3p13		rs62247034-A	NR	8E-14		0.1652	[0.12-0.21] unit decrease	Affymetrix, Illumina [25837843] (imputed)	N
1130	chr3	71547038	71547039	rs6798507	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p13	Intergenic	rs6798507-A	0.6391	5E-9	(MTAG)	0.0109	[0.0072-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1130	chr3	71549638	71549639	rs6779258	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p13	FOXP1	rs6779258-?	NR	9E-10		0.012331557	[0.0084-0.0163] unit decrease	NR [7306098]	N
1130	chr3	71549638	71549639	rs6779258	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p13	FOXP1	rs6779258-T	NR	2E-10		0.01896019	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1130	chr3	71551869	71551870	rs2133627	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	3p13	NR	rs2133627-?		1E-5		2.9914	[2.51-3.48]	NR [NR] (imputed)	N
1130	chr3	71557580	71557581	rs67000219	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p13		rs67000219-T	0.1137	3E-8		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1130	chr3	71557864	71557865	rs17718831	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3p13	NR	rs17718831-A	0.6306	1E-9	(Superior Parietal)	18.133408	[12.32-23.95] unit decrease	Affymetrix, Illumina [NR]	N
1130	chr3	71557944	71557945	rs34346645	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	3p13	FOXP1	rs34346645-C	0.5803	8E-19		1.2462612	[1.19-1.32]	Illumina [8966411] (imputed)	N
1131	chr3	71569076	71569077	rs62244881	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p13	NR	rs62244881-?	NR	1E-8		1.0968	[1.07-1.13]	Affymetrix, Illumina [12447948] (imputed)	N
1131	chr3	71569076	71569077	rs62244881	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p13	NR	rs62244881-T	NR	3E-7		1.09	[NR]	Illumina [7158791] (imputed)	N
1131	chr3	71571344	71571345	rs6803008	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3p13	FOXP1, MIR1284	rs6803008-?		1E-8		1.0638298	[1.04-1.08]	Affymetrix, Illumina [NR]	N
1131	chr3	71571695	71571696	rs1499894	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p13	NR	rs1499894-?	NR	5E-8	(right superior parietal)			NR [9227495] (imputed)	N
1131	chr3	71575176	71575177	rs7626335	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p13	FOXP1, EIF4E3	rs7626335-C	0.6695	6E-12		1.0290129		Affymetrix [11880941] (imputed)	N
1131	chr3	71576057	71576058	rs111242991	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	3p13		rs111242991-T	NR	4E-21		0.0944	[0.075-0.114] unit increase	Affymetrix, Illumina [25845421] (imputed)	N
1131	chr3	71578736	71578737	rs7624274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p13	Intergenic	rs7624274-A	0.4371	1E-20	(MTAG)	0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr3	71578736	71578737	rs7624274	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p13	Intergenic	rs7624274-T	0.5629	5E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr3	71579021	71579022	rs7610856	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p13	NR	rs7610856-A	0.4267	3E-8		0.012479268	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1131	chr3	71582520	71582521	rs11714337	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p13	NR	rs11714337-?		5E-11		0.0144017	[0.01-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1131	chr3	71582520	71582521	rs11714337	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p13	FOXP1	rs11714337-A	0.4256	8E-11		0.01333042	[0.0093-0.0173] unit increase	Affymetrix [up to 18485882] (imputed)	N
1131	chr3	71583176	71583177	rs35480566	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p13	FOXP1	rs35480566-A	0.56	1E-20		0.0221	[0.017-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1131	chr3	71583176	71583177	rs35480566	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p13	FOXP1	rs35480566-A	0.56	2E-16		0.0195	[0.015-0.024] unit decrease	Affymetrix [19819130] (imputed)	N
1131	chr3	71586152	71586153	rs937519	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p13	FOXP1	rs937519-T	0.052	5E-8		0.0146	[0.0093-0.0199] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1131	chr3	71586292	71586293	rs55736314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs55736314-C	0.599	5E-27		0.0154	[0.013-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr3	71586292	71586293	rs55736314	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p13	Intergenic	rs55736314-C	0.599	4E-32	(MTAG)	0.0158	[0.013-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1131	chr3	71586292	71586293	rs55736314	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p13	FOXP1	rs55736314-?	NR	4E-9		5.906	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1131	chr3	71595257	71595258	rs11720121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p13		rs11720121-?	NR	9E-14				NR [~ 8900000] (imputed)	N
1131	chr3	71611629	71611630	rs62244890	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p13	NR	rs62244890-T	0.585	4E-8		0.0107503	[0.0069-0.0146] unit increase	NR [NR]	N
1131	chr3	71621668	71621669	rs2116709	27539887	Chahal HS	2016-08-19	Nat Commun	Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.	Basal cell carcinoma	12.945 European ancestry cases, 274,252 European ancestry controls	4,242 European ancestry cases, 12,802 European ancestry controls	3p13	FOXP1	rs2116709-A	0.6	2E-17		1.1111112	[NR]	Illumina [at least 560000] (imputed)	N
1131	chr3	71626261	71626262	rs830599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	FOXP1	rs830599-C	NR	2E-8		0.0185988	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1131	chr3	71627681	71627682	rs2322031	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		3p13	NR	rs2322031-T	NR	4E-6		1.0954486	[1.05-1.14]	Affymetrix [5734850] (imputed)	N
1131	chr3	71632265	71632266	rs6801781	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p13	FOXP1	rs6801781-A	0.31	1E-8		0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1131	chr3	71639293	71639294	rs59967356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs59967356-T	0.8698	2E-9		0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1131	chr3	71640775	71640776	rs1529675	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	3p13	NR	rs1529675-G	0.407	5E-11		0.0104344	[0.0073-0.0135] unit decrease	NR [9732723] (imputed)	N
1131	chr3	71640775	71640776	rs1529675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3p13		rs1529675-?	NR	4E-21				NR [~ 8900000] (imputed)	N
1131	chr3	71640775	71640776	rs1529675	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p13	NR	rs1529675-A	NR	5E-9		5.854	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1131	chr3	71647280	71647281	rs830652	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	3p13		rs830652-A	NR	2E-8		0.0787	[0.051-0.106] unit decrease	Affymetrix, Illumina [25842273] (imputed)	N
1131	chr3	71648867	71648868	rs853866	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p13	NR	rs853866-T	0.6109	3E-8		0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1131	chr3	71648867	71648868	rs853866	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3p13	NR	rs853866-A	0.408	1E-9		0.0144869	[0.0098-0.0191] unit decrease	NR [9732723] (imputed)	N
1131	chr3	71655371	71655372	rs35733869	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3p13		rs35733869-T	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1131	chr3	71656044	71656045	rs844215	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p13	NR	rs844215-C	0.5867	2E-8		0.0262	[0.017-0.035] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1131	chr3	71667062	71667063	rs830643	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p13	FOXP1	rs830643-A	0.4138	4E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1131	chr3	71675269	71675270	rs830627	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p13	FOXP1	rs830627-G	NR	3E-9		0.0075675	[0.0051-0.0101] unit decrease	Affymetrix [10061374] (imputed)	N
1131	chr3	71675422	71675423	rs862687	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p13	ENSG00000270562	rs862687-A	NR	5E-12		0.021585597	[0.015-0.028] unit increase	Affymetrix [NR]	N
1131	chr3	71677816	71677817	rs830622	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3p13		rs830622-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1131	chr3	71677980	71677981	rs17663165	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	3p13		rs17663165-?	NR	3E-8				NR [7857346] (imputed)	N
1131	chr3	71677980	71677981	rs17663165	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p13	ENSG00000270562	rs17663165-A	NR	2E-8		5.609	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1131	chr3	71679147	71679148	rs830620	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3p13		rs830620-?	NR	4E-12		1.0784	[1.06-1.1]	NR [685523]	N
1131	chr3	71679147	71679148	rs830620	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p13	EIF4E3	rs830620-C	0.584612	8E-15		0.0149922	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1131	chr3	71681486	71681487	rs7630228	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p13		rs7630228-T	0.56	7E-11				NR [NR] (imputed)	N
1131	chr3	71681486	71681487	rs7630228	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3p13		rs7630228-T	0.56	2E-12		0.013	mmol/L decrease	NR [NR] (imputed)	N
1131	chr3	71681486	71681487	rs7630228	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p13		rs7630228-T	0.56	4E-12		0.011	% increase	NR [NR] (imputed)	N
1132	chr3	71710268	71710269	rs704278	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p13		rs704278-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1132	chr3	71720565	71720566	rs704285	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3p13		rs704285-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1132	chr3	71744123	71744124	rs56981400	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	3p13	EIF4E3	rs56981400-G	0.979	5E-6		1.59	[1.23-2.05]	Affymetrix, Illumina [12148595] (imputed)	N
1132	chr3	71756271	71756272	rs17008972	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3p13	EIF4E3	rs17008972-G	0.875795	8E-11		0.0193784	[0.014-0.025] unit decrease	Affymetrix [NR] (imputed)	N
1132	chr3	71760040	71760041	rs12487980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p13		rs12487980-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	3p13	NR	rs34778241-TG	0.614617	2E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix [23037915] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3p13		rs34778241-TG	NR	8E-10		0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p13	EIF4E3	rs34778241-TG	0.619842	9E-24		0.024752462	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p13	EIF4E3	rs34778241-T	0.380158	3E-16		0.019947985	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p13	NR	rs34778241-I	0.619243	5E-16		0.018094	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	3p13	EIF4E3	rs34778241-TG	0.71	2E-9		0.03	NR unit decrease	Illumina [9591901] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	3p13	EIF4E3	rs34778241-TG	0.62	1E-24		0.013	unit increase	NR [NR]	N
1132	chr3	71771215	71771215	rs34778241	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3p13	EIF4E3	rs34778241-TG	0.6176	2E-14		0.03031825	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1132	chr3	71771215	71771215	rs34778241	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3p13	EIF4E3	rs34778241-TG	0.6176	1E-11		0.02692521	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1132	chr3	71774790	71774791	rs114113354	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3p13		rs114113354-G	NR	3E-13		0.0167	[0.012-0.021] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1132	chr3	71796493	71796494	rs75972158	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3p13	NR	rs75972158-T	NR	2E-9		0.0268	[0.018-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1132	chr3	71814430	71814431	rs116310555	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p13		rs116310555-?	NR	1E-8				NR [NR]	N
1132	chr3	71814430	71814431	rs116310555	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p13		rs116310555-?	NR	3E-8				NR [NR]	N
1132	chr3	71814430	71814431	rs116310555	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p13		rs116310555-?	NR	2E-8				NR [NR]	N
1132	chr3	71814430	71814431	rs116310555	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3p13		rs116310555-?	NR	5E-8				NR [NR]	N
1132	chr3	71823581	71823582	rs3796224	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs3796224-T	0.125093	5E-11				Affymetrix, Illumina [23467995] (imputed)	N
1132	chr3	71824684	71824685	rs13070279	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3p13	PROK2	rs13070279-A	0.1147	4E-9		0.03309436	[0.022-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1133	chr3	71829241	71829242	rs7644362	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3p13	PROK2	rs7644362-A	0.7975	3E-289	(PROK2, 10754_113_3)	1.000967	[0.95-1.05] unit decrease	Illumina [> 1000000] (imputed)	N
1133	chr3	71829466	71829467	rs7634474	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p13	PROK2	rs7634474-G	0.830024	6E-12		0.020422965	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1133	chr3	71854586	71854587	rs6777956	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PROK2	5,367 Icelandic ancestry individuals	NA	3p13		rs6777956-T	0.26	2E-97		0.440125	[0.4-0.48] unit decrease	Illumina [7506463] (imputed)	N
1133	chr3	71880577	71880578	rs7622817	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	3p13	PROK2	rs7622817-?	NR	3E-10	(Serum_C)	0.038993936	NR unit increase	Illumina [609262]	N
1133	chr3	71929247	71929248	rs192814509	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	3p13	NR	rs192814509-?	NR	3E-6		0.8561	[0.49-1.22] unit decrease	Illumina [at least 560000] (imputed)	N
1134	chr3	71981088	71981089	rs58920042	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p13	Intergenic	rs58920042-T	NR	8E-7	(between families)	4.931	unit increase	Affymetrix [up to 15107142] (imputed)	N
1134	chr3	72023699	72023700	rs2135319	22085899	Chen G	2011-11-16	Eur J Hum Genet	UGT1A1 is a major locus influencing bilirubin levels in African Americans.	Bilirubin levels	619 African American individuals	NA	3p13	RP11-648C16.1	rs2135319-A	0.081	4E-6		0.194	[0.112-0.276] unit increase	Affymetrix [808465]	N
1134	chr3	72036919	72036920	rs77673554	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3p13	NR	rs77673554-?	NR	8E-6	(Native Hawaiian)	0.9345	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1135	chr3	72109831	72109832	rs35688352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3p13	LINC00877	rs35688352-G	0.18116	1E-11		0.019540679	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr3	72109831	72109832	rs35688352	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3p13	LINC00877	rs35688352-G	0.181154	1E-10		0.01861957	[0.013-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1135	chr3	72161232	72161233	rs6549438	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine - clinic-based	5,175 European ancestry clinic-based cases, 13,972 European ancestry clinic-based controls	NA	3p13	intergenic	rs6549438-?	0.52	4E-6		1.12	[1.06-1.18]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1135	chr3	72171987	72171988	rs62245195	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs62245195-A	0.189972	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1135	chr3	72172180	72172181	rs7646695	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3p13	NR	rs7646695-T	0.17966	2E-11		0.017597	[0.012-0.023] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1135	chr3	72176524	72176525	rs1316386	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3p13		rs1316386-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1136	chr3	72225915	72225916	rs7637844	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	3p13	LINC00870	rs7637844-A	0.871	1E-8		0.877	[0.83-0.92]	Illumina [11270530] (imputed)	N
1136	chr3	72253587	72253588	rs72959604	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p13	NR	rs72959604-G	0.01394	3E-8	(DUSP3)	0.04499	NR unit decrease	Illumina [1671387] (imputed)	N
1136	chr3	72273360	72273361	rs143551942	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p13	NR	rs143551942-?	NR	8E-6		0.0079423	[0.0045-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1136	chr3	72286900	72286901	rs7432379	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3p13	LINC00877	rs7432379-C	0.6504	7E-10		0.02330406	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1136	chr3	72287270	72287272	rs10587701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3p13	LINC00877	rs10587701-A	0.694485	2E-21		0.023172503	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr3	72287270	72287272	rs10587701	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3p13	LINC00877	rs10587701-A	0.694413	1E-20		0.022547109	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr3	72287270	72287272	rs10587701	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3p13	LINC00877	rs10587701-A	0.6941	6E-10		0.02397208	[0.016-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1136	chr3	72288744	72288745	rs12632003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3p13	LINC00877	rs12632003-G	0.695776	6E-12		0.01671867	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr3	72288744	72288745	rs12632003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3p13	LINC00877	rs12632003-G	0.695757	6E-12		0.016735403	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr3	72288744	72288745	rs12632003	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3p13	LINC00877	rs12632003-G	0.695701	2E-20		0.022404693	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1136	chr3	72289169	72289170	rs4282028	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3p13	LINC00877	rs4282028-C	0.6962	2E-9		0.02370636	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1136	chr3	72289169	72289170	rs4282028	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	3p13	LINC00877	rs4282028-C	0.6961	2E-13		0.02886359	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1136	chr3	72338225	72338226	rs74439371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p13		rs74439371-C	NR	6E-10		0.0331	[0.023-0.043] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1136	chr3	72338225	72338226	rs74439371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3p13		rs74439371-C	0.133688	6E-10		0.0331226	[0.023-0.044] unit increase	Illumina [13476266] (imputed)	N
1136	chr3	72338225	72338226	rs74439371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p13		rs74439371-C	NR	6E-10		0.0335	[0.023-0.044] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1136	chr3	72338225	72338226	rs74439371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3p13		rs74439371-C	0.133771	6E-10		0.0334721	[0.023-0.044] unit increase	Illumina [13476299] (imputed)	N
1136	chr3	72344700	72344701	rs4677137	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	RYBP	rs4677137-G	0.564893	4E-8	(-48 ms)	0.0314712	[0.02-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1137	chr3	72353931	72353932	rs9809213	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3p13	ENSG00000260670	rs9809213-?	NR	1E-9		6.114	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1137	chr3	72353931	72353932	rs9809213	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	3p13	ENSG00000260670	rs9809213-?	NR	9E-9		5.753	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
1137	chr3	72363673	72363674	rs9820604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p13	Intergenic	rs9820604-T	0.8212	3E-10	(MTAG)	0.0136	[0.0093-0.0179] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr3	72363673	72363674	rs9820604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p13		rs9820604-T	0.8254	5E-10		0.0115	[0.008-0.015] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1137	chr3	72363673	72363674	rs9820604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p13	Intergenic	rs9820604-T	0.8254	1E-11	(MTAG)	0.0117	[0.0084-0.015] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr3	72363673	72363674	rs9820604	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p13	Intergenic	rs9820604-T	0.8242	2E-8	(MTAG)	0.0168	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1137	chr3	72386265	72386266	rs55890339	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RP11-447M4.1	rs55890339-T	NR	1E-11		0.0251415	[0.018-0.032] unit decrease	Affymetrix [323123] (imputed)	N
1137	chr3	72386265	72386266	rs55890339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3p13		rs55890339-T	0.221928	2E-18		0.023540972	[0.018-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72386265	72386266	rs55890339	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3p13		rs55890339-T	0.221938	1E-14		0.020791272	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72389386	72389387	rs9869961	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RP11-447M4.1	rs9869961-G	NR	5E-11		0.0207931	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1137	chr3	72392309	72392310	rs11128264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RP11-447M4.1	rs11128264-T	NR	6E-12		0.0210401	[0.015-0.027] unit decrease	Affymetrix [323123] (imputed)	N
1137	chr3	72392309	72392310	rs11128264	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p13	NR	rs11128264-?	NR	6E-9	(male)	0.20255	[0.13-0.27] unit decrease	Affymetrix [7794483] (imputed)	N
1137	chr3	72392309	72392310	rs11128264	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p13	NR	rs11128264-?	NR	3E-8		0.12198	[0.079-0.165] unit decrease	Affymetrix [7794483] (imputed)	N
1137	chr3	72392644	72392645	rs4677148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3p13		rs4677148-G	NR	3E-9		0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1137	chr3	72392644	72392645	rs4677148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3p13		rs4677148-G	NR	2E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1137	chr3	72392644	72392645	rs4677148	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RP11-447M4.1	rs4677148-G	NR	2E-13		0.0259404	[0.019-0.033] unit decrease	Affymetrix [323123] (imputed)	N
1137	chr3	72392644	72392645	rs4677148	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs4677148-G	0.295822	3E-11				Affymetrix, Illumina [24653286] (imputed)	N
1137	chr3	72393140	72393141	rs9832740	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3p13	RYBP	rs9832740-G	0.49	5E-13		1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1137	chr3	72394851	72394852	rs61192126	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3p13	RYBP	rs61192126-T	0.705604	7E-10		1.0416778	[1.02824880005505-1.05528233494582]	NR [9572556] (imputed)	N
1137	chr3	72394851	72394852	rs61192126	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3p13	NR	rs61192126-T	0.709	8E-9		1.0390689	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1137	chr3	72394851	72394852	rs61192126	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3p13	NR	rs61192126-T	0.709	9E-10		1.0379905	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1137	chr3	72394851	72394852	rs61192126	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3p13		rs61192126-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1137	chr3	72394851	72394852	rs61192126	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3p13	LINC00870, RYBP	rs61192126-T	0.69	9E-11		1.037	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1137	chr3	72395414	72395415	rs9815599	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	RYBP	rs9815599-?	NR	5E-8	(indoxyl sulfate)	0.21110077	[0.14-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1137	chr3	72395569	72395570	rs11720098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs11720098-C	0.284224	7E-12				Affymetrix, Illumina [24558453] (imputed)	N
1137	chr3	72396240	72396241	rs9859562	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p13	RP11-447M4.1	rs9859562-C	NR	2E-8		0.0160223	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
1137	chr3	72396240	72396241	rs9859562	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3p13	LINC00870, RYBP	rs9859562-?	NR	1E-22		0.028805098	[0.023-0.035] unit decrease	Illumina [27896057] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	3p13		rs11708187-A	0.474323	4E-8		0.0242701	[0.016-0.033] unit increase	Illumina [13471440] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3p13		rs11708187-A	0.241476	3E-10		0.016327696	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3p13		rs11708187-A	0.241486	3E-10		0.016391516	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3p13	NR	rs11708187-A	0.23909	3E-13		0.015748	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3p13	NR	rs11708187-A	0.239058	9E-14		0.0161	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1137	chr3	72396328	72396329	rs11708187	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p13		rs11708187-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1137	chr3	72396901	72396902	rs9821691	31711042	Li X	2019-11-11	Aging (Albany NY)	Genome-wide association study identifies SIAH3 locus influencing the rate of ventricular enlargement in non-demented elders.	Rate of ventricular enlargement	507 European ancestry individuals	NA	3p13	intergenic	rs9821691-G	0.43	2E-6		0.013	NR unit increase	Illumina [1231747]	N
1137	chr3	72397278	72397279	rs9809116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3p13		rs9809116-G	NR	3E-21		0.0184	[0.015-0.022] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3p13		rs9809116-G	NR	2E-23		0.021	[0.017-0.025] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p13		rs9809116-G	NR	1E-71		0.0235	[0.021-0.026] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3p13		rs9809116-G	0.619874	6E-18		0.0179028	[0.014-0.022] unit decrease	Illumina [13479295] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3p13		rs9809116-A	0.592	4E-14				Affymetrix [10369434] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p13	RYBP	rs9809116-G	NR	4E-11		0.0189813	[0.013-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RYBP	rs9809116-G	NR	9E-15		0.0243743	[0.018-0.031] unit decrease	Affymetrix [323123] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3p13	intergenic	rs9809116-A	0.5919	1E-16		0.016	[0.012-0.02] unit increase	Affymetrix [18391927] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3p13		rs9809116-G	0.408144	2E-13		0.016855467	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3p13		rs9809116-G	0.408143	1E-18		0.020237138	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs9809116-G	0.459221	2E-27				Affymetrix, Illumina [24588908] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3p13	NR	rs9809116-G	0.409006	2E-25		0.019469	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p13	NR	rs9809116-G	0.445649	8E-22				Affymetrix, Illumina [23467995] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p13	NR	rs9809116-G	0.408841	8E-20		0.01741	[0.014-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p13		rs9809116-?	NR	4E-92				NR [~ 8900000] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p13		rs9809116-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1137	chr3	72397278	72397279	rs9809116	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3p13	intergenic	rs9809116-G	0.4076	1E-12		0.02649979	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1137	chr3	72398978	72398979	rs9832502	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p13	NR	rs9832502-A	0.248629	4E-9		0.017474	[0.011-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1137	chr3	72400380	72400381	rs6792408	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3p13	RYBP	rs6792408-A	NR	4E-8		0.0178261	[0.011-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1137	chr3	72400380	72400381	rs6792408	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p13	NR	rs6792408-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
1137	chr3	72400694	72400695	rs12497693	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3p13	RYBP	rs12497693-T	NR	3E-10		0.0195977	[0.014-0.026] unit increase	Affymetrix [323123] (imputed)	N
1137	chr3	72400694	72400695	rs12497693	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p13	RYBP	rs12497693-T	0.4193	2E-6		0.0311	[0.018-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1137	chr3	72400712	72400713	rs79362307	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p13	NR	rs79362307-A	0.01045	3E-9	(AKR1C3)	0.5912	NR unit increase	Illumina [1671387] (imputed)	N
1137	chr3	72413686	72413687	rs4677155	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	SHQ1	rs4677155-?	NR	5E-6	(quinolinic acid)	0.30883288	[0.18-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1137	chr3	72413737	72413738	rs9840391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p13	NR	rs9840391-G	0.434657	3E-10		0.01237	[0.0085-0.0162] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1137	chr3	72416161	72416162	rs28563888	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3p13	RYBP	rs28563888-T	NR	6E-10		0.0207853	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1137	chr3	72417371	72417372	rs7652333	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (beta blocking agents)	31,700 European ancestry cases, 192,324 European ancestry controls	NA	3p13	RYBP	rs7652333-T	0.483816	2E-8		0.04740127	[0.031-0.064] unit increase	Affymetrix [7288503] (imputed)	N
1137	chr3	72417856	72417857	rs4677156	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p13	RYBP	rs4677156-A	0.230804	4E-8		0.00924646	[0.006-0.0125] unit increase	Affymetrix [12370749]	N
1137	chr3	72417856	72417857	rs4677156	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3p13	RYBP	rs4677156-A	0.2281	5E-6		0.0353	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1137	chr3	72418901	72418902	rs4392361	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p13	NR	rs4392361-T	0.02439	3E-9	(ACSM2B)	1.13	NR unit increase	Illumina [1671387] (imputed)	N
1137	chr3	72419225	72419226	rs5018014	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	920 child cases	NA	3p13	LINC00870, RYBP	rs5018014-T	0.15	7E-6		0.58	[0.33-0.83] unit decrease	Illumina [at least 4710000] (imputed)	N
1137	chr3	72424470	72424471	rs12956	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p13		rs12956-G	NR	2E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1137	chr3	72424928	72424929	rs115769518	33536081	Hu J	2021-02-03	Hum Genomics	Genetic variants are identified to increase risk of COVID-19 related mortality from UK Biobank data.	Mortality in COVID-19	292 European ancestry cases, 804 European ancestry controls	NA	3p13	NR	rs115769518-?	NR	1E-5				NR [18617478] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-A	0.6441	8E-7	(men)	0.032	[0.019-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-A	0.6441	1E-8		0.0243	[0.016-0.033] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-A	0.6441	1E-6	(women)	0.0322	[0.019-0.045] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p13	RYBP	rs7628338-A	0.6499	2E-6	(men)	0.0348	[0.02-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p13	RYBP	rs7628338-A	0.6443	5E-6	(women)	0.034	[0.019-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p13	RYBP	rs7628338-A	0.6441	1E-7		0.0253	[0.016-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-?	0.6441	7E-8				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-?	0.6441	3E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72432887	72432888	rs7628338	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs7628338-?	0.6441	1E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72437412	72437413	rs9863706	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3p13	RYBP	rs9863706-T	0.22	4E-13		0.031	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs12330322-C	0.7823	7E-8	(EA, men)	0.0369	[0.024-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs12330322-C	0.7823	2E-9	(EA)	0.0273	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs12330322-?	0.7823	4E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p13	RYBP	rs12330322-T	0.2274	2E-6		0.0201	[0.012-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p13	RYBP	rs12330322-T	0.2149	4E-7	(EA, men)	0.0295	[0.018-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p13	RYBP	rs12330322-T	0.2149	3E-8	(EA)	0.0223	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1137	chr3	72455354	72455355	rs12330322	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3p13	RYBP	rs12330322-T	0.218	3E-22		0.034	[0.026-0.042] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1137	chr3	72457220	72457221	rs6549455	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p13	RYBP	rs6549455-G	0.6578999999999999	5E-7	(EA, men)	0.038	[0.023-0.053] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72457220	72457221	rs6549455	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p13	RYBP	rs6549455-G	0.6577999999999999	9E-9	(EA)	0.0289	[0.019-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1137	chr3	72457220	72457221	rs6549455	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p13	RYBP	rs6549455-?	0.6577999999999999	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1138	chr3	72509270	72509271	rs11128271	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p13	NR	rs11128271-C	0.93627697952826	6E-7	(IGP67)	0.338	[0.21-0.47] unit increase	Illumina [~ 2500000] (imputed)	N
1138	chr3	72509270	72509271	rs11128271	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p13	NR	rs11128271-C	0.936242533184855	6E-6	(IGP63)	0.3063	[0.17-0.44] unit decrease	Illumina [~ 2500000] (imputed)	N
1138	chr3	72509636	72509637	rs13072744	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3p13	RYBP	rs13072744-T	0.48	5E-10		0.029	[0.015-0.043] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1138	chr3	72518039	72518040	rs9832314	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p13	NR	rs9832314-G	0.055934898976413	9E-6	(IGP66)	0.2992	[0.17-0.43] unit decrease	Illumina [~ 2500000] (imputed)	N
1138	chr3	72520242	72520243	rs893468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	SHQ1	rs893468-?	NR	2E-9	(quinolinic acid)	0.32102206	[0.22-0.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1138	chr3	72520242	72520243	rs893468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	SHQ1	rs893468-?	NR	2E-8	(kynurenine)	0.29983273	[0.2-0.4] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1138	chr3	72523053	72523054	rs76411082	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p13	NR	rs76411082-G	0.01045	3E-8	(FERMT2)	0.1139	NR unit increase	Illumina [1671387] (imputed)	N
1138	chr3	72589130	72589131	rs115842101	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	3p13	RYBP	rs115842101-C	0.973	2E-7	(Stability score)	2.0346	[1.27-2.8] unit increase	Affymetrix [8042262] (imputed)	N
1139	chr3	72677090	72677091	rs923576	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Cold sores	25,108 European ancestry cases, 63,332 European ancestry controls	NA	3p13	NR	rs923576-?	NR	6E-6		0.0692	[0.039-0.099] unit increase	Illumina [at least 560000] (imputed)	N
1139	chr3	72678228	72678229	rs9847523	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3p13	Intergenic	rs9847523-G	0.701864286	8E-6		0.157958	[0.089-0.227] unit increase	Illumina [6952813] (imputed)	N
1139	chr3	72700605	72700606	rs142486331	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p13	NR	rs142486331-A	0.01394	2E-10	(DCN)	0.05494	NR unit increase	Illumina [1671387] (imputed)	N
1140	chr3	72781074	72781075	rs2046867	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p13	intergenic	rs2046867-?	NR	5E-6		0.328	[0.19-0.47] unit increase	Illumina [at least 13000000] (imputed)	N
1140	chr3	72803589	72803590	rs9814945	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p13	NR	rs9814945-C	0.7128	3E-11		0.0316	[0.022-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1140	chr3	72813581	72813582	rs11922794	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p13	NR	rs11922794-G	0.7494	1E-8		0.0301	[0.02-0.04] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1140	chr3	72865182	72865183	rs13085136	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p13	SHQ1	rs13085136-C	0.9283	2E-8		1.08	[1.05-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1140	chr3	72875021	72875022	rs115077075	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3p13	NR	rs115077075-C		8E-6		0.7289	[0.38-1.08] SD units decrease	NR [10700000] (imputed)	N
1141	chr3	72934370	72934371	rs1847202	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	3p13	GXYLT2	rs1847202-T	0.644	3E-8		0.031	[0.02-0.042] unit increase	Illumina [7428049] (imputed)	N
1141	chr3	72970167	72970168	rs184854233	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GXYLT2	rs184854233-?	NR	9E-9	(female)	1.74306	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1142	chr3	73046507	73046508	rs9834246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3p13	NR	rs9834246-C	0.530524	3E-10		0.011886	[0.0082-0.0156] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1142	chr3	73102724	73102725	rs9824246	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3p13	NR	rs9824246-?	NR	6E-7	(AA)	6.2	[5.18-7.22]	Illumina [905956]	N
1142	chr3	73113527	73113528	rs4676901	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p13		rs4676901-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1142	chr3	73117834	73117835	rs1045960	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p13	PPP4R2, EBLN2	rs1045960-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
1142	chr3	73133414	73133415	rs111598816	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 4 levels	252 European ancestry individuals	NA	3p13		rs111598816-G	NR	5E-6		4.6214	[2.67-6.57] unit increase	Illumina [NR] (imputed)	N
1142	chr3	73137480	73137481	rs140006825	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3p13	Intergenic	rs140006825-C	0.016	4E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1143	chr3	73157287	73157288	rs6766673	29618737	Napier MD	2018-04-04	Sci Rep	Genome-wide association study and meta-analysis identify loci associated with ventricular and supraventricular ectopy.	Ventricular ectopy	2,468 European ancestry cases, 21,204 European ancestry controls, 481 African ancestry cases, 8,793 African ancestry controls, 168 Hispanic/Latino ancestry cases, 11,017 Hispanic/Latino ancestry controls	NA	3p13	intergenic	rs6766673-C	NR	2E-6		1.1363636	[1.08-1.2]	Affymetrix, Illumina [NR] (imputed)	N
1143	chr3	73221262	73221263	rs62249739	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3p13	NR	rs62249739-?		3E-8	(Posterior corona radiata )			NR [8955960] (imputed)	N
1143	chr3	73238692	73238693	rs11719409	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	3p13	NR	rs11719409-?	NR	7E-6				Illumina [8270200] (imputed)	N
1143	chr3	73246336	73246337	rs13083406	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p13	PPP4R2	rs13083406-A	0.4304	7E-9		0.1142	[0.075-0.153] mmHg increase	Affymetrix [NR] (imputed)	N
1143	chr3	73259145	73259146	rs1486286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p13		rs1486286-C	NR	4E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1143	chr3	73260544	73260545	rs729448	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	3p13	PPP4R2	rs729448-G	0.45289999999999997	3E-10		0.1303	[0.09-0.171] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1144	chr3	73274288	73274289	rs13100165	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	3p13	Intergenic	rs13100165-?		9E-7		0.2282	[NR] unit increase	Affymetrix [NR] (imputed)	N
1144	chr3	73276951	73276952	rs12486903	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	3p13	Intergenic	rs12486903-?		6E-6	(EA)	0.2336	[0.13-0.33] unit decrease	Affymetrix [NR] (imputed)	N
1144	chr3	73309902	73309903	rs13070764	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number (white blood cells)	1,333 males	NA	3p13	PPP4R2, PDZRN3	rs13070764-A	NR	6E-7		0.497	[0.3-0.69] unit decrease	Illumina [7369986] (imputed)	N
1144	chr3	73320944	73320945	rs13064098	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p13		rs13064098-C	0.826	3E-8		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1144	chr3	73345162	73345163	rs6764757	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p13		rs6764757-T	0.47	6E-20		9.14	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr3	73345518	73345519	rs62249762	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p13		rs62249762-A	0.46	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1144	chr3	73345518	73345519	rs62249762	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p13	NR	rs62249762-A	0.4687	2E-12				NR [9056863] (imputed)	N
1144	chr3	73348874	73348875	rs17752319	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 204)	19,670 European ancestry individuals	NA	3p13		rs17752319-?	NR	7E-9				NR [9705931] (imputed)	N
1144	chr3	73375370	73375371	rs6764873	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to antidepressants (non-treatment-resistant vs treatment-resistant depression)	21,649 European ancestry individuals with non-treatment-resistant depression, 3,857 European ancestry individuals with treatment-resistant depression	NA	3p13	NR	rs6764873-T	NR	2E-7		1.1591	NR	Illumina [at least 560000] (imputed)	N
1146	chr3	73540617	73540618	rs4557101	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	3p13	NR	rs4557101-C	0.22	4E-6		1.72	[0.99-2.45] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
1146	chr3	73547755	73547756	rs13082924	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p13		rs13082924-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1146	chr3	73551227	73551228	rs13087058	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference (BMI adjusted)	13,625 European ancestry individuals, 1,465 African American individuals	3,297 European ancestry individuals	3p13	NR	rs13087058-?	NR	5E-8		0.1288	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
1146	chr3	73551227	73551228	rs13087058	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3p13	PDZRN3	rs13087058-C	0.37	6E-17		1.0	[0.76-1.24] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1146	chr3	73553959	73553960	rs11917619	32602732	Baldassari AR	2020-06-30	Circ Genom Precis Med	Multi-ethnic Genome-wide Association Study of Decomposed Cardioelectric Phenotypes Illustrates Strategies to Identify and Characterize Evidence of Shared Genetic Effects for Complex Traits.	Electrocardiographic traits (multivariate)	17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals	NA	3p13	PDZRN3	rs11917619-?	NR	8E-7				Affymetrix, Illumina [22000000] (imputed)	N
1146	chr3	73554921	73554922	rs4677294	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 3)	18,096 European individuals		3p13	NR	rs4677294-A	0.35979	3E-14		0.084387	[0.063-0.106] unit increase	Affymetrix [14134301] (imputed)	N
1146	chr3	73554921	73554922	rs4677294	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 2)	18,096 European individuals		3p13	NR	rs4677294-A	0.35979	1E-17		0.094829	unit increase	Affymetrix [14134301] (imputed)	N
1146	chr3	73554921	73554922	rs4677294	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3p13	PDZRN3	rs4677294-T	0.6656	5E-34		0.8306	[0.7-0.96] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1146	chr3	73565182	73565183	rs7647178	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	8,732 European American and African American ancestry men	NA	3p13	NR	rs7647178-?	NR	2E-7		0.2208	NR unit decrease	Affymetrix, Illumina [7784259] (imputed)	N
1146	chr3	73565182	73565183	rs7647178	33907307	Liu Y	2021-04-27	Int J Obes (Lond)	Genome-wide association study of neck circumference identifies sex-specific loci independent of generalized adiposity.	Neck circumference	13,625 European ancestry individuals, 1,465 African American individuals	NA	3p13	NR	rs7647178-?	NR	8E-6		0.154	NR unit decrease	Affymetrix, Illumina [8865513] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	5E-14	(-34 ms)	0.043999	[0.032-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	5E-13	(-30 ms)	0.0430125	[0.031-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	2E-12	(-36 ms)	0.0415657	[0.03-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	2E-11	(-28 ms)	0.0392649	[0.028-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	1E-9	(-38 ms)	0.0357189	[0.024-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	1E-8	(-26 ms)	0.03311	[0.022-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73565946	73565946	rs766206762	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3p13	PDZRN3	rs766206762-ACAGGACACGGAGTC	0.652298	1E-13	(-32 ms)	0.0436725	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1146	chr3	73599304	73599305	rs4461368	30679814	van Setten J	2019-01-24	Eur J Hum Genet	Genome-wide association meta-analysis of 30,000 samples identifies seven novel loci for quantitative ECG traits.	PR interval	2,370 Erasmus Rucphen Family (founder/genetic isolate) individuals, 29,325 European ancestry individuals	391 Carlantino (founder/genetic isolate) individuals, 981 Friuli Venezia Giulia (founder/genetic isolate) individuals, 31,033 European ancestry individuals, 2,070 African American individuals	3p13	PDZRN3	rs4461368-T	0.626	2E-8		1.102	[0.72-1.48] unit increase	Affymetrix, Illumina [at least 19000000] (imputed)	N
1146	chr3	73619560	73619561	rs11128347	21546767	Murea M	2011-05-05	Am J Nephrol	Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes.	Dialysis-related mortality	610 African American type 2 diabetes cases	NA	3p13	PDZRN3	rs11128347-?	0.89	6E-7		1.85	[1.45-2.33]	Affymetrix [832357]	N
1147	chr3	73718135	73718136	rs9828758	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Systemic mastocytosis	93 European ancestry cases, 5,606 European ancestry controls	NA	3p13	RP11	rs9828758-T	0.293	2E-8		0.1495	[-0.61510-0.91410]	Illumina [281811]	N
1147	chr3	73718135	73718136	rs9828758	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	3p13	RP11	rs9828758-T	0.29300000000000004	9E-24		0.1467	[-0.28568-0.57908]	Illumina [281811]	N
1147	chr3	73718135	73718136	rs9828758	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	3p13	RP11	rs9828758-T	0.293	7E-14		0.04732	[-1.09614-1.19078]	Illumina [281811]	N
1147	chr3	73718135	73718136	rs9828758	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis	141 European ancestry cases, 5,606 European ancestry controls	NA	3p13	RP11	rs9828758-T	0.293	5E-17		0.1454	[-0.37733-0.66813]	Illumina [281811]	N
1147	chr3	73743435	73743436	rs907341	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p13	CNTN3	rs907341-?	NR	9E-6	(adenosine monophosphate)	0.1936894	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1148	chr3	73811568	73811569	rs291482	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p13	intergenic	rs291482-?	NR	2E-6		0.0285	[0.017-0.040] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1148	chr3	73844551	73844552	rs77373510	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	3p13	PDZRN3-AS1, CNTN3	rs77373510-T	0.07	6E-6		113.719	[64.55-162.89] kcal/day decrease	Affymetrix [491265]	N
1148	chr3	73846134	73846135	rs2874979	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p13	Intergenic	rs2874979-G	NR	7E-6	(adjusted for total body fat)	0.0942	[0.053-0.135] unit increase	Illumina [8511049] (imputed)	N
1148	chr3	73862615	73862616	rs586936	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3p13	PDZRN3-AS1	rs586936-A	0.4022	2E-13		0.018	[0.013-0.023] unit decrease	Affymetrix [19819130] (imputed)	N
1148	chr3	73862615	73862616	rs586936	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3p13	PDZRN3-AS1	rs586936-A	0.4022	3E-6		0.0113	[0.0066-0.016] unit decrease	Affymetrix [19819130] (imputed)	N
1148	chr3	73862615	73862616	rs586936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3p13		rs586936-?	NR	6E-17				NR [~ 8900000] (imputed)	N
1148	chr3	73862615	73862616	rs586936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3p13		rs586936-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1148	chr3	73874698	73874699	rs167096	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3p13	NR	rs167096-T	0.25961999999999996	4E-10		0.017315	[0.011-0.024] unit increase	Affymetrix [16580851] (imputed)	N
1150	chr3	74073181	74073182	rs1949931	30113228	Torgerson DG	2018-08-16	Am J Physiol Lung Cell Mol Physiol	Ancestry and Genetic Associations with Bronchopulmonary Dysplasia in Preterm Infants.	Bronchopulmonary dysplasia in preterm infants	136 European ancestry cases, 82 African American cases, 28 Hispanic cases, 41 European ancestry controls, 51 African American controls, 14 Hispanic controls	NA	3p13	Intergenic	rs1949931-?	NR	9E-6		2.564103		Affymetrix [8800000] (imputed)	N
1150	chr3	74095313	74095314	rs1526727	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p13	Intergenic	rs1526727-T	NR	2E-6	(men)	0.0213562	[0.013-0.03] unit increase	Illumina [13520550] (imputed)	N
1150	chr3	74128101	74128102	rs6549582	29682794	Szekely E	2018-04-22	Genet Epidemiol	Genetic associations with childhood brain growth, defined in two longitudinal cohorts.	White matter growth	581 European ancestry individuals, 31 African American individuals, 8 Asian American individuals 15 admixed individuals, 80 other ancestries individuals	NA	3p13	LINC02005, CNTN3	rs6549582-?	NR	3E-6				Illumina [at least 653030]	N
1150	chr3	74166175	74166176	rs146125378	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	T cell %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p12.3		rs146125378-A	0.0154	2E-9		0.5846	[0.39-0.77] unit increase	Illumina [18430820] (imputed)	N
1150	chr3	74166175	74166176	rs146125378	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Lymphocyte %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p12.3		rs146125378-A	0.0154	2E-8		0.5598	[0.36-0.76] unit increase	Illumina [18430820] (imputed)	N
1150	chr3	74166175	74166176	rs146125378	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Granulocyte %leukocyte	3,669 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p12.3		rs146125378-A	0.0154	4E-8		0.5557	[0.36-0.75] unit decrease	Illumina [18430820] (imputed)	N
1150	chr3	74182479	74182480	rs138498518	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p12.3	NR	rs138498518-?	NR	5E-8				Illumina [7760689] (imputed)	N
1151	chr3	74246260	74246260	rs201072423	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	3p12.3	CNTN3	rs201072423-D	0.508	3E-8		1.0224063	[NR]	Illumina [12493444] (imputed)	N
1152	chr3	74371935	74371936	rs677171	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3p12.3	NR	rs677171-C	0.071	3E-7	(Females)	0.434985	[0.27-0.6] unit decrease	Illumina [~ 6600000] (imputed)	N
1153	chr3	74460246	74460247	rs75462778	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	3p12.3	NR	rs75462778-T	0.9617	4E-10		1.5292	[1.05-2.01] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
1153	chr3	74460246	74460247	rs75462778	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	3p12.3	NR	rs75462778-?	NR	2E-8				Affymetrix, Illumina [6211246] (imputed)	N
1153	chr3	74464790	74464791	rs114108912	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		3p12.3	NR	rs114108912-C	0.01	8E-6		2.49	[1.67-3.72]	Illumina [~ 8000000] (imputed)	N
1153	chr3	74534527	74534528	rs10428206	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3p12.3	NR	rs10428206-?	NR	1E-6	(AA)	29.8	[27.35-32.25]	Illumina [905956]	N
1154	chr3	74627702	74627703	rs13073838	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	3p12.3	intergenic	rs13073838-T	NR	3E-6	(Economic policy)	0.116	[0.067-0.165] unit decrease	Illumina [628922]	N
1154	chr3	74635096	74635097	rs1374879	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	3p12.3	NR	rs1374879-?		8E-6				Illumina [1211988] (imputed)	N
1154	chr3	74710461	74710462	rs9857362	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3p12.3	CNTN3	rs9857362-A	0.5308	1E-9		0.151	[0.1-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1155	chr3	74783407	74783408	rs34310778	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (30 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	3p12.3	CNTN3	rs34310778-T	0.571703	1E-9		0.0357738	[0.024-0.047] unit decrease	Affymetrix [509255] (imputed)	N
1155	chr3	74786490	74786491	rs6549649	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Heart rate response to recovery post exercise	up to 35,455 European ancestry females, up to 31,802 European ancestry males	NA	3p12.3	CNTN3	rs6549649-G	0.559	1E-9		0.328	[0.22-0.43] bpm decrease	Affymetrix [~ 7800000] (imputed)	N
1155	chr3	74791016	74791017	rs6549653	29497042	Verweij N	2018-03-01	Nat Commun	Genetic study links components of the autonomous nervous system to heart-rate profile during exercise.	Heart rate response to recovery post exercise (20 sec)	5,4137 European ancestry individuals, 1,744 Asian individuals, 1,445 African individuals, 468 admixed individuals, 1,024 individuals	NA	3p12.3	CNTN3	rs6549653-C	0.518289	8E-9		0.0334569	[0.022-0.045] unit decrease	Affymetrix [509255] (imputed)	N
1156	chr3	74883068	74883069	rs11915934	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p12.3	intergenic	rs11915934-A	0.1828	2E-9		0.073	[0.049-0.097] unit increase	NR [9744772] (imputed)	N
1156	chr3	74900209	74900210	rs6549665	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p12.3	CNTN3	rs6549665-G	0.177988	5E-8		0.027304	[0.017-0.037] unit increase	Affymetrix [641018] (imputed)	N
1156	chr3	74903903	74903904	rs1918394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.3		rs1918394-T	0.1658	3E-10		0.0119	[0.0082-0.0156] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1156	chr3	74903903	74903904	rs1918394	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.3	Intergenic	rs1918394-T	0.1658	2E-10	(MTAG)	0.0112	[0.0077-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1156	chr3	74949455	74949456	rs4334682	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p12.3	intergenic	rs4334682-T	0.155918	1E-10		0.0185368	[0.013-0.024] unit increase	NR [16516521] (imputed)	N
1156	chr3	74954559	74954560	rs4543050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.3	NR	rs4543050-T	0.816	1E-11		0.022203531	[0.016-0.029] unit increase	NR [~ 10000000] (imputed)	N
1157	chr3	75009018	75009019	rs11712680	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.3	NR	rs11712680-C	0.185	4E-14		0.0104937	[0.0078-0.0132] unit decrease	NR [9732723] (imputed)	N
1157	chr3	75040338	75040339	rs62266828	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.3		rs62266828-G	0.814	4E-14		0.012	[0.0081-0.0159] unit increase	NR [NR] (imputed)	N
1158	chr3	75146491	75146492	rs551879660	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	3p12.3	NIPA2P2	rs551879660-?	NR	5E-8				Illumina [10215072] (imputed)	N
1158	chr3	75146491	75146492	rs551879660	31591132	Wu W	2019-10-07	Genetics	Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use.	Longitudinal cocaine use	1,682 mostly never users, 296 moderate decrease users, 86 elevated chronic users, 167 mostly frequent users	NA	3p12.3	NIPA2P2	rs551879660-?	NR	4E-7	(AA)			Illumina [10215072] (imputed)	N
1158	chr3	75147812	75147813	rs72628656	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.3	Intergenic	rs72628656-A	0.2186	8E-9	(MTAG)	0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1160	chr3	75377276	75377277	rs6796799	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3p12.3	NR	rs6796799-?	NR	8E-32		0.38	[0.3-0.46] unit decrease	Illumina [at least 830937] (imputed)	N
1160	chr3	75394092	75394093	rs141706116	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	3p12.3	FAM86DP	rs141706116-A	0.01	3E-6		6.43	[3.73-9.13] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1160	chr3	75408038	75408039	rs141895192	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p12.3	Intergenic	rs141895192-T	NR	3E-6	(adjusted for total body fat)	0.279	[0.16-0.4] unit decrease	Illumina [8511049] (imputed)	N
1160	chr3	75436678	75436679	rs6776354	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3p12.3	NR	rs6776354-?	NR	1E-6		0.55	[0.35-0.89]	Illumina [539000] (imputed)	N
1160	chr3	75446660	75446661	rs113942635	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	3p12.3	FAM86DP	rs113942635-T	0.01	8E-6		0.81	[0.46-1.16] unit increase	Illumina [14638245] (imputed)	N
1161	chr3	75521354	75521355	rs116419656	34993496	Jiang Y	2021-11-19	HGG Adv	Genetic Factors Associated with Prostate Cancer Conversion from Active Surveillance to Treatment.	Conversion from active surveillance to active treatment in prostate cancer	1,609 European ancestry cases, 3,613 European ancestry controls	77 European ancestry cases, 348 European ancestry controls, 123 African ancestry cases, 273 African ancestry controls, 88 Asian ancestry cases, 149 Asian ancestry controls, 21 Latin American cases, 60 Latin American controls	3p12.3		rs116419656-G	0.01	2E-8		3.45	[2.24-5.32]	Illumina [9962324] (imputed)	N
1161	chr3	75562195	75562196	rs181986572	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p12.3		rs181986572-A	0.0039298	8E-6		0.23783	[0.13-0.34] unit decrease	Affymetrix [15580782] (imputed)	N
1166	chr3	76172231	76172232	rs1400237	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	3p12.3	ROBO2	rs1400237-T	0.0778	2E-6		21.4345	[13.27-29.6] unit increase	Illumina [~ 6000000] (imputed)	N
1166	chr3	76214197	76214198	rs62268951	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3p12.3	ROBO2	rs62268951-C	0.026	3E-6		2.21	[1.58-3.09]	Illumina [8672852] (imputed)	N
1166	chr3	76221678	76221679	rs7636341	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3p12.3	NR	rs7636341-?		2E-8				NR [8377093]	N
1166	chr3	76230060	76230061	rs112379405	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.3		rs112379405-C	0.5502	7E-9		0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1166	chr3	76261819	76261820	rs1516459	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Eating disorders (purging via substances)	600 European ancestry female cases, 1,921 European ancestry female controls	NA	3p12.3	intergenic	rs1516459-C	0.968	3E-6		0.27	[0.16-0.38] unit decrease	Illumina [6150213] (imputed)	N
1166	chr3	76264741	76264742	rs4856019	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	3p12.3	NR	rs4856019-?		2E-9				NR [520857]	N
1166	chr3	76267367	76267368	rs4855976	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	3p12.3	ROBO2	rs4855976-A	0.0702	8E-6		23.7477	[14.02-33.48] unit increase	Illumina [~ 6000000] (imputed)	N
1166	chr3	76269885	76269886	rs35261864	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p12.3	NR	rs35261864-C	NR	6E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1167	chr3	76297173	76297174	rs9713737	30552317	Guo W	2018-12-14	Transl Psychiatry	Exploratory genome-wide association analysis of response to ketamine and a polygenic analysis of response to scopolamine in depression.	Response to ketamine in bipolar disorder or major depression (dissociation effects)	90 European ancestry individuals	NA	3p12.3	ROBO2	rs9713737-A	0.244	5E-6		13.5351	[8.15-18.92] unit increase	Illumina [~ 6000000] (imputed)	N
1167	chr3	76380856	76380857	rs6789770	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	3p12.3	ROBO2	rs6789770-G	0.8505	2E-6		1.14465	NR	Affymetrix, Illumina [30341632] (imputed)	N
1167	chr3	76407919	76407920	rs182526918	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.3	NR	rs182526918-A	0.01045	1E-8	(C5)	0.05106	NR unit increase	Illumina [1671387] (imputed)	N
1167	chr3	76413819	76413820	rs7611506	31005965	Coltell O	2019-04-21	Am J Clin Nutr	Association between taste perception and adiposity in overweight or obese older subjects with metabolic syndrome and identification of novel taste-related genes.	Bitter taste perception (6-n-propylthiouracil) in obesity with metabolic syndrome	368 individuals	NA	3p12.3	ROBO2	rs7611506-C	0.152	7E-6		1.624	[0.93-2.32] unit increase	Illumina [622468]	N
1168	chr3	76463988	76463988	rs200154456	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	3p12.3	NR	rs200154456-?	NR	8E-6		0.6147	[0.36-0.87] unit increase	Illumina [at least 560000] (imputed)	N
1168	chr3	76469373	76469374	rs3849490	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3p12.3	NR	rs3849490-?	NR	2E-8		1.049274	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1168	chr3	76472108	76472109	rs150774831	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	3p12.3	NR	rs150774831-G		6E-6		0.5046	[0.3-0.71] SD units increase	NR [10700000] (imputed)	N
1168	chr3	76484182	76484183	rs3849491	22675492	Prescott J	2012-06-04	PLoS One	Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.	Sex hormone-binding globulin levels	1,598 European ancestry female individuals	NA	3p12.3	intergenic	rs3849491-T	0.48	6E-6		0.073	[NR] unit decrease	Illumina [~ 2500000] (imputed)	N
1168	chr3	76534877	76534878	rs74801337	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	3p12.3	NR	rs74801337-A		2E-6		0.4268	[0.25-0.6] unit increase	Illumina [12759548] (imputed)	N
1168	chr3	76541853	76541854	rs143943961	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3p12.3	NR	rs143943961-C	NR	2E-6	(random effect)	1.17	NR	NR [6904914] (imputed)	N
1169	chr3	76569034	76569035	rs35750876	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	3p12.3	NR	rs35750876-?	NR	8E-6		0.00636	[0.0036-0.0091] unit decrease	Affymetrix [9658292] (imputed)	N
1169	chr3	76645852	76645853	rs79354274	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.3	NR	rs79354274-C	0.03659	2E-8	(NPC2)	0.04002	NR unit increase	Illumina [1671387] (imputed)	N
1169	chr3	76651172	76651173	rs190591447	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-16 levels	3,483 Finnish ancestry individuals	NA	3p12.3	NR	rs190591447-G		1E-6		0.5403	[0.33-0.75] SD units increase	NR [10700000] (imputed)	N
1169	chr3	76674407	76674408	rs5850274	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD25++ CD8+ T cell Absolute Count	3,130 Sardinian (founder/genetic isolate) ancestry individuals	NA	3p12.3		rs5850274-G	0.65145	2E-8		0.157	[0.1-0.21] unit decrease	Illumina [18189521] (imputed)	N
1170	chr3	76716793	76716794	rs12497518	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	3p12.3	intergenic	rs12497518-?	0.53	1E-6		1.6666665	[1.35-2.08]	NR [~ 38000000] (imputed)	N
1170	chr3	76722765	76722766	rs264537	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (PAL4Q3)	up to 2,969 European ancestry individuals	NA	3p12.3	ROBO2	rs264537-C	0.43	3E-6	(Age 20-60 years)	1.35	[1.19-1.54]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1170	chr3	76725902	76725903	rs10511052	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3p12.3	NR	rs10511052-G	0.950688225100133	6E-6	(IGP7)	0.3598	[0.2-0.52] unit increase	Illumina [~ 2500000] (imputed)	N
1170	chr3	76770689	76770690	rs187318872	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p12.3	ROBO2	rs187318872-T	0.9958	4E-6		0.4058	[0.23-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1171	chr3	76853327	76853328	rs17014723	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (PD_whole_tree index)	1,068 Japanese ancestry individuals	NA	3p12.3	ROBO2	rs17014723-T	0.22	8E-6	(male)	1.28	[0.73-1.83] unit increase	Illumina [6380737] (imputed)	N
1171	chr3	76853327	76853328	rs17014723	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota alpha diversity (Chao1 index)	1,068 Japanese ancestry individuals	NA	3p12.3	ROBO2	rs17014723-T	0.22	4E-6	(male)	55.5	[32.37-78.63] unit increase	Illumina [6380737] (imputed)	N
1171	chr3	76857313	76857314	rs1082422	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	3p12.3	NR	rs1082422-A		2E-6		0.6159	[0.36-0.87] unit increase	Illumina [12764477] (imputed)	N
1171	chr3	76870854	76870855	rs13070294	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p12.3	Intergenic	rs13070294-T	NR	4E-6	(adjusted for total body fat)	0.287	[0.17-0.41] unit decrease	Illumina [8511049] (imputed)	N
1171	chr3	76881603	76881604	rs3911520	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.3	ROBO1	rs3911520-?	NR	3E-6	(LPE 18:1)	0.2781314	[0.16-0.4] unit increase	Affymetrix [at least 2500000] (imputed)	N
1172	chr3	77000899	77000900	rs183369465	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.3	ROBO2	rs183369465-T	1.0	2E-6	(AA)	4.98	NR unit increase	Illumina [NR] (imputed)	N
1172	chr3	77041837	77041838	rs6793699	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p12.3		rs6793699-?	NR	6E-11				NR [9705931] (imputed)	N
1172	chr3	77060528	77060529	rs115093658	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	3p12.3	NR	rs115093658-?	NR	9E-6		0.2082	[0.11-0.3] unit increase	Illumina [at least 560000] (imputed)	N
1173	chr3	77076417	77076418	rs4312693	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3p12.3	NR	rs4312693-?	NR	3E-7		1.86	[1.72-2.01]	Illumina [539000] (imputed)	N
1173	chr3	77176031	77176032	rs6782116	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.3	NR	rs6782116-T	0.415	1E-8		0.01465022	[0.0096-0.0197] unit decrease	NR [~ 10000000] (imputed)	N
1173	chr3	77192590	77192591	rs149831820	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer thickness or ganglion cell inner plexiform layer thickness (MTAG)	31,434 European ancestry individuals	NA	3p12.3	NR	rs149831820-C	0.06	3E-8		0.42	[0.28-0.56] unit decrease	Affymetrix [9231066] (imputed)	N
1173	chr3	77192590	77192591	rs149831820	33979322	Currant H	2021-05-12	PLoS Genet	Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.	Retinal nerve fibre layer (RNFL) thickness	31,434 European ancestry individuals	NA	3p12.3	NR	rs149831820-C	0.06	3E-8		0.42	[0.28-0.56] unit decrease	Affymetrix [9231066] (imputed)	N
1174	chr3	77205437	77205438	rs7429614	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p12.3	ROBO2	rs7429614-T	0.416	2E-19		1.0337		Affymetrix [11880941] (imputed)	N
1174	chr3	77205437	77205438	rs7429614	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.3	ROBO2	rs7429614-T	0.416	2E-19		1.0355161		Affymetrix [11880941] (imputed)	N
1174	chr3	77208015	77208016	rs73095857	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.3	Intergenic	rs73095857-G	0.5961	2E-8		0.013	[0.0085-0.0175] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1174	chr3	77208520	77208521	rs9876864	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p12.3		rs9876864-A	0.4128	9E-14		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1174	chr3	77224210	77224211	rs4683992	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p12.3	ROBO2	rs4683992-?		2E-11				NR [7428630] (imputed)	N
1174	chr3	77240829	77240830	rs7426688	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.3		rs7426688-C	0.742	6E-12		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1174	chr3	77240829	77240830	rs7426688	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.3	NR	rs7426688-T	0.239	9E-11		0.00821895	[0.0057-0.0107] unit decrease	NR [9732723] (imputed)	N
1174	chr3	77243604	77243605	rs11709706	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3p12.3	NR	rs11709706-?	NR	1E-7				Illumina [7427422] (imputed)	N
1174	chr3	77260880	77260881	rs9682036	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	3p12.3	NR	rs9682036-?		2E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1174	chr3	77288468	77288469	rs61419856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.3	Intergenic	rs61419856-T	0.7395	4E-8	(MTAG)	0.0082	[0.0053-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1174	chr3	77293136	77293137	rs11927597	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.3	Intergenic	rs11927597-T	0.7379	2E-8	(MTAG)	0.0105	[0.0068-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1174	chr3	77301120	77301121	rs60194061	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p12.3		rs60194061-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1174	chr3	77312066	77312067	rs66799104	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Triglycerides levels in medium HDL meal response (LMM)	11,410 individuals	NA	3p12.3		rs66799104-G	0.109672	5E-8		0.0874972	[0.064-0.111] unit decrease	Illumina [7568622] (imputed)	N
1174	chr3	77321569	77321570	rs11924337	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3p12.3	ROBO2	rs11924337-C	0.2707	3E-16		1.0353		Affymetrix [11880941] (imputed)	N
1175	chr3	77336335	77336336	rs17771441	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p12.3	NR	rs17771441-T	0.4126	1E-17				NR [9056863] (imputed)	N
1175	chr3	77336681	77336682	rs12497639	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p12.3		rs12497639-A	0.4	2E-23		9.97	z score increase	Affymetrix [9061022] (imputed)	N
1175	chr3	77338587	77338588	rs28604332	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p12.3		rs28604332-C	0.4	3E-33		12.0	z score increase	Affymetrix [9061022] (imputed)	N
1175	chr3	77338587	77338588	rs28604332	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p12.3	NR	rs28604332-C	0.4171	1E-17				NR [9056863] (imputed)	N
1175	chr3	77356733	77356734	rs35750090	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p12.3		rs35750090-C	0.4	9E-57		15.88	z score increase	Affymetrix [9061022] (imputed)	N
1175	chr3	77356733	77356734	rs35750090	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p12.3		rs35750090-?	NR	2E-16				NR [9705931] (imputed)	N
1175	chr3	77441825	77441826	rs116291712	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.3	ROBO2	rs116291712-A	0.0127	6E-6		0.034198	[0.019-0.049] unit decrease	Affymetrix [11880941] (imputed)	N
1176	chr3	77560016	77560017	rs935526	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3p12.3	NR	rs935526-T	NR	5E-8		5.452	z score decrease	Affymetrix [10847151] (imputed)	N
1176	chr3	77574554	77574555	rs62251113	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	3p12.3	ROBO2	rs62251113-A	0.3665	5E-8		1.0236204	[NR]	Illumina [12493444] (imputed)	N
1176	chr3	77580214	77580215	rs796529	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.3		rs796529-A	0.29	2E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1176	chr3	77581256	77581257	rs775756	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	3p12.3	NR	rs775756-?		5E-8				NR [520857]	N
1176	chr3	77582004	77582005	rs775758	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3p12.3		rs775758-A	0.433	1E-8		0.012	[0.0081-0.0159] unit increase	Affymetrix [up to 90000000] (imputed)	N
1176	chr3	77591191	77591192	rs775766	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	3p12.3	NR	rs775766-?		2E-8				NR [11140414]	N
1176	chr3	77591191	77591192	rs775766	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3p12.3	NR	rs775766-A	NR	2E-8		5.659	z score increase	Affymetrix [10847151] (imputed)	N
1176	chr3	77593063	77593064	rs9309771	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	3p12.3	NR	rs9309771-A	0.4521	6E-9		1.03	[1.02-1.04]	Affymetrix, Illumina [10862568] (imputed)	N
1177	chr3	77599165	77599166	rs74936745	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	90,806 British ancestry male cases, 99,165 British ancestry male controls	NA	3p12.3	NR	rs74936745-AC	NR	3E-7		0.008362	[0.0052-0.0115] unit increase	NR [11010159] (imputed)	N
1177	chr3	77599165	77599166	rs74936745	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	3p12.3	NR	rs74936745-AC	NR	4E-10		0.00649012	[0.0044-0.0085] unit increase	NR [11010159] (imputed)	N
1177	chr3	77599165	77599166	rs74936745	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	3p12.3	NR	rs74936745-AC	NR	2E-8	(adjusted for BMI)	0.005773	[0.0037-0.0078] unit increase	NR [11010159] (imputed)	N
1177	chr3	77609775	77609776	rs808966	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.3		rs808966-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1177	chr3	77610206	77610207	rs143902882	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.3	ROBO2	rs143902882-T	0.993	3E-6	(AA)	0.106	unit increase	Illumina [NR] (imputed)	N
1177	chr3	77625448	77625449	rs142772618	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.3	ROBO2	rs142772618-C	0.992	3E-6	(AA)	0.102	unit increase	Illumina [NR] (imputed)	N
1177	chr3	77636879	77636880	rs775736	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.3	NR	rs775736-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1177	chr3	77646862	77646863	rs200870675	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p12.3	NR	rs200870675-TG	NR	7E-16		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1177	chr3	77649189	77649190	rs1666132	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p12.3	ROBO2	rs1666132-C	0.422104	7E-9		0.00827303	[0.0055-0.0111] unit increase	Affymetrix [12370749]	N
1177	chr3	77652741	77652742	rs73114594	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (5-HIAA/ MHPG Ratio)	up to 398 European ancestry individuals	NA	3p12.3	ROBO2	rs73114594-A		7E-6		0.272	unit increase	Illumina [5767231] (imputed)	N
1177	chr3	77667043	77667044	rs1523768	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p12.3	NA	rs1523768-A	0.6721	4E-13		0.0126	[0.0093-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1177	chr3	77670447	77670448	rs1523766	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p12.3	ROBO2	rs1523766-A	0.4979	1E-8		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1177	chr3	77671720	77671721	rs2272163	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p12.3	NR	rs2272163-C	0.6367	4E-9		0.0235	[0.016-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1177	chr3	77671720	77671721	rs2272163	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3p12.3	ROBO2	rs2272163-C	0.6184	1E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1177	chr3	77688510	77688511	rs35723777	29898447	Alaraudanjoki VK	2018-06-13	Caries Res	Genome-Wide Association Study of Erosive Tooth Wear in a Finnish Cohort.	Erosive tooth wear (severe vs non-severe)	86 Finnish ancestry male severe erosion cases, 50 Finnish ancestry female severe erosion cases, 817 Finnish ancestry male non-severe erosion controls, 991 Finnish ancestry female non-severe erosion controls	NA	3p12.3	NR	rs35723777-?	NR	4E-6				Illumina [NR] (imputed)	N
1177	chr3	77717755	77717756	rs7642482	25226531	St Pourcain B	2014-09-16	Nat Commun	Common variation near ROBO2 is associated with expressive vocabulary in infancy.	Expressive vocabulary in infants	6,851 European ancestry 15-18-month-old children, 6,299 European ancestry 24-30-month-old children	2,038 European ancestry 15-18-month-old children, 4,520 European ancestry 24-30-month-old children	3p12.3	ROBO2	rs7642482-G	0.19	1E-8	(15-18 months)	0.11	[0.073-0.147] unit decrease	Illumina [2449665] (imputed)	N
1178	chr3	77756561	77756562	rs62254472	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (30 minutes)	553 European ancestry individuals, 1,346 individuals	NA	3p12.3	NR	rs62254472-A	0.9893	1E-6		0.9109	[0.54-1.28] unit increase	Illumina [NR] (imputed)	N
1178	chr3	77764923	77764924	rs12630112	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	3p12.3	NR	rs12630112-G	NR	1E-6		1.4352	NR	Illumina [at least 560000] (imputed)	N
1178	chr3	77856622	77856623	rs3852018	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p12.3	NR	rs3852018-?		4E-8				Illumina [4322238] (imputed)	N
1178	chr3	77856622	77856623	rs3852018	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p12.3	NR	rs3852018-?		2E-6				Illumina [4322238] (imputed)	N
1179	chr3	77956327	77956328	rs6548531	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	3p12.3	NR	rs6548531-G	NR	2E-6		0.7019	NR	Illumina [at least 560000] (imputed)	N
1180	chr3	78018367	78018368	rs114756276	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.3	NR	rs114756276-C	0.01916	1E-8	(PREP)	0.03317	NR unit increase	Illumina [1671387] (imputed)	N
1180	chr3	78044688	78044689	rs9836484	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	3p12.3	ROBO1, ROBO2	rs9836484-?	0.32	4E-6				Illumina [302783]	N
1180	chr3	78105224	78105225	rs13434277	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3p12.3	NR	rs13434277-G	0.385283	4E-9		0.018745	[0.013-0.025] unit increase	NR [19129689] (imputed)	N
1182	chr3	78279460	78279461	rs7645322	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	3p12.3	Intergenic	rs7645322-T	0.57742	9E-6		0.189254	[0.11-0.27] unit increase	Illumina [6969139] (imputed)	N
1182	chr3	78305321	78305322	rs115723230	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3p12.3		rs115723230-?	NR	9E-6		3.33	[1.70-6.54]	Illumina [6778521] (imputed)	N
1182	chr3	78305321	78305322	rs115723230	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3p12.3	LOC105377173, ROBO1	rs115723230-?	NR	2E-6		4.88		Illumina [6778521] (imputed)	N
1182	chr3	78316214	78316215	rs59431802	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 62)	19,670 European ancestry individuals	NA	3p12.3		rs59431802-?	NR	2E-15				NR [9705931] (imputed)	N
1182	chr3	78327208	78327209	rs73106254	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p12.3	Intergenic	rs73106254-G	NR	9E-6	(adjusted for total body fat)	0.278	[0.16-0.4] unit decrease	Illumina [8511049] (imputed)	N
1182	chr3	78330701	78330702	rs73106273	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3p12.3	Intergenic	rs73106273-G	NR	9E-6	(adjusted for subcutaneous fat)	0.256	[0.14-0.37] unit decrease	Illumina [8511049] (imputed)	N
1182	chr3	78353590	78353591	rs9831754	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	3p12.3	intergenic	rs9831754-T	NR	8E-6		0.02	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1182	chr3	78357271	78357272	rs1355625	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	3p12.3		rs1355625-A	NR	4E-6		2.5	[1.6-3.93]	Illumina [NR] (imputed)	N
1183	chr3	78440563	78440564	rs9844755	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p12.3		rs9844755-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1183	chr3	78440563	78440564	rs9844755	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.3		rs9844755-A	0.3354	5E-8		0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1183	chr3	78440563	78440564	rs9844755	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.3	Intergenic	rs9844755-A	0.3354	1E-10	(MTAG)	0.0091	[0.0064-0.0118] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1183	chr3	78449776	78449777	rs6419733	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p12.3		rs6419733-C	NR	7E-9		0.0118	[0.0079-0.0157] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1183	chr3	78458927	78458928	rs6419734	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.3	NR	rs6419734-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1183	chr3	78458927	78458928	rs6419734	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.3		rs6419734-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1183	chr3	78458927	78458928	rs6419734	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p12.3	NA	rs6419734-T	0.1448	4E-11		0.0161	[0.011-0.021] unit increase	NR [~ 27400000] (imputed)	N
1183	chr3	78475603	78475604	rs1398333	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p12.3		rs1398333-A	NR	4E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1183	chr3	78483401	78483402	rs114728753	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p12.3	ROBO1	rs114728753-A	0.674753	1E-9		0.00895145	[0.0061-0.0118] unit decrease	Affymetrix [12370749]	N
1183	chr3	78491784	78491785	rs6548565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.3	Intergenic	rs6548565-A	0.6446	2E-12	(MTAG)	0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1183	chr3	78491785	78491786	rs6548566	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.3	Intergenic	rs6548566-G	0.3559	3E-10		0.0149	[0.01-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1183	chr3	78498996	78498997	rs9834373	18464913	Melzer D	2008-05-09	PLoS Genet	A genome-wide association study identifies protein quantitative trait loci (pQTLs).	Protein quantitative trait loci	1,200 European ancestry individuals	up to 4,590 European ancestry individuals	3p12.3	ROBO1	rs9834373-?	0.17	4E-6	(GP130)			Illumina [496032]	N
1184	chr3	78538430	78538431	rs182765975	27992416	Lane JM	2016-12-19	Nat Genet	Genome-wide association analyses of sleep disturbance traits identify new loci and highlight shared genetics with neuropsychiatric and metabolic traits.	Excessive daytime sleepiness	111,648 European ancestry individuals	NA	3p12.3	ROBO1	rs182765975-T	0.003	3E-8	(adjusted for depression)	0.099	[0.064-0.134] unit increase	Affymetrix [up to 73355677] (imputed)	N
1184	chr3	78551906	78551907	rs17016200	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition	4,097 European ancestry individuals	NA	3p12.3	ROBO1	rs17016200-G	0.855	2E-6		4.79	z score increase	Illumina [2487351] (imputed)	N
1184	chr3	78552231	78552232	rs13089920	26853712	Zhang YB	2016-02-08	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for craniofacial microsomia.	Craniofacial microsomia	330 Chinese ancestry left-side-affected cases, 609 Chinese ancestry right-side-affected cases, 2,012 Chinese ancestry controls	151 Chinese ancestry left-side-affected cases, 292 Chinese ancestry right-side-affected cases, 1,669 Chinese ancestry controls	3p12.3	ROBO1	rs13089920-A	0.06	2E-120		5.18	[4.51-5.95]	Illumina [792342]	N
1184	chr3	78571588	78571589	rs56323848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p12.3	Intergenic	rs56323848-A	0.514	1E-9	(MTAG)	0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1184	chr3	78571588	78571589	rs56323848	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p12.3	Intergenic	rs56323848-T	0.486	6E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1184	chr3	78593912	78593913	rs73117594	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	3p12.3	NR	rs73117594-?		2E-8				NR [11140414]	N
1184	chr3	78593912	78593913	rs73117594	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p12.3	ROBO1	rs73117594-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1184	chr3	78593912	78593913	rs73117594	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3p12.3	NR	rs73117594-T	NR	2E-8		5.659	z score increase	Affymetrix [10847151] (imputed)	N
1184	chr3	78600897	78600898	rs1444472	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3p12.3		rs1444472-?	NR	9E-6		0.10784259	[0.061-0.155] unit decrease	Illumina [9939936] (imputed)	N
1184	chr3	78609598	78609599	rs17016312	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3p12.3		rs17016312-C	NR	9E-9		0.0128	[0.0085-0.0171] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1184	chr3	78610830	78610831	rs1507413	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	3p12.3	ROBO1	rs1507413-?	NR	2E-6				Illumina [7401356] (imputed)	N
1185	chr3	78661128	78661129	rs1027829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p12.3		rs1027829-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1185	chr3	78687770	78687771	rs149420276	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	3p12.3	NR	rs149420276-G		2E-6		0.4235	[0.25-0.6] SD units increase	NR [10700000] (imputed)	N
1185	chr3	78693839	78693840	rs2660739	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	3p12.3	ROBO1	rs2660739-A	0.06	7E-6	(EA)	2.46	[1.64-3.69]	Illumina [up to 547389]	N
1186	chr3	78783083	78783084	rs3773240	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3p12.3	NR	rs3773240-T	0.2328	1E-10		0.0137	[0.0096-0.0178] unit increase	NR [~ 27400000] (imputed)	N
1186	chr3	78787868	78787869	rs11927671	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p12.3		rs11927671-G	0.49	8E-9		5.77	z score increase	Affymetrix [9061022] (imputed)	N
1186	chr3	78790554	78790555	rs73111654	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3p12.3	ROBO1	rs73111654-?		3E-8		0.2141	[0.14-0.29] unit increase	Illumina [31500000] (imputed)	N
1186	chr3	78796077	78796078	rs2304503	28608620	Coleman JRI	2017-06-13	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of facial emotion recognition in children and association with polygenic risk for mental health disorders.	Facial emotion recognition (fearful faces)	4,097 European ancestry individuals	NA	3p12.3	ROBO1	rs2304503-A	0.522	4E-6		4.64	z score decrease	Illumina [2487351] (imputed)	N
1186	chr3	78803169	78803170	rs151187999	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	3p12.3	NR	rs151187999-?	NR	1E-6		2.532	[1.51-3.56] unit increase	Illumina [at least 560000] (imputed)	N
1186	chr3	78815905	78815906	rs424737	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	3p12.3	ROBO1	rs424737-?	NR	5E-8		0.025	[0.033-0.016] unit decrease	Illumina [12039491] (imputed)	N
1186	chr3	78830839	78830840	rs1840969	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p12.3	Intergenic	rs1840969-A	0.579386545895436	5E-10		0.019002179	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1186	chr3	78830855	78830859	rs148663950	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p12.3	NR	rs148663950-?	NR	7E-21				Illumina [at least 7383741] (imputed)	N
1186	chr3	78835737	78835738	rs4681011	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3p12.3	ROBO1	rs4681011-A	NR	3E-8		0.0162564	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1186	chr3	78835737	78835738	rs4681011	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3p12.3	NR	rs4681011-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1186	chr3	78835737	78835738	rs4681011	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p12.3		rs4681011-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1186	chr3	78850107	78850108	rs6548600	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3p12.3	NR	rs6548600-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1186	chr3	78896234	78896235	rs17377726	26480920	Sung YJ	2015-10-20	Int J Obes (Lond)	Genome-wide association studies suggest sex-specific loci associated with abdominal and visceral fat.	Visceral adipose tissue	1,152 European ancestry males, 1,361 European ancestry females	NA	3p12.3	ROBO1	rs17377726-A	0.06	8E-7	(men)	0.11	[NR] unit increase	Affymetrix, Illumina [2473256] (imputed)	N
1187	chr3	79013877	79013878	rs17313732	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p12.3	NR	rs17313732-?	NR	3E-13				Illumina [at least 7383741] (imputed)	N
1187	chr3	79024540	79024541	rs17379690	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.3	ROBO2	rs17379690-?	NR	5E-6	(lysine)	0.3649121	[0.21-0.52] unit increase	Affymetrix [at least 2500000] (imputed)	N
1190	chr3	79359632	79359633	rs73122578	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (anti-tuberculosis drugs)	67 European ancestry cases, 10,588 European ancestry controls	NA	3p12.3	NR	rs73122578-?	NR	5E-7		2.42	1.71-3.40	Illumina [505740] (imputed)	N
1190	chr3	79413349	79413350	rs2871632	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.3	Intergenic	rs2871632-A	0.5506	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1190	chr3	79423486	79423487	rs12714476	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p12.3	NR	rs12714476-A	0.3853	2E-8				NR [9056863] (imputed)	N
1191	chr3	79445638	79445639	rs36118723	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.3	Intergenic	rs36118723-A	0.4042	2E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1191	chr3	79448491	79448492	rs114216628	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	3p12.3		rs114216628-T	0.01	1E-8				NR [NR] (imputed)	N
1191	chr3	79448491	79448492	rs114216628	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (1df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	3p12.3		rs114216628-T	0.01	2E-7		0.47	[0.16-0.78] unit increase	NR [NR] (imputed)	N
1192	chr3	79571480	79571481	rs11293842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3p12.3		rs11293842-C	NR	2E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1192	chr3	79590509	79590510	rs35552746	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p12.3		rs35552746-C	0.46	5E-9		5.86	z score increase	Affymetrix [9061022] (imputed)	N
1192	chr3	79604063	79604064	rs7617400	24124411	Park TJ	2013-09-30	Genomics Inform	Genome-wide association study of liver enzymes in korean children.	Liver enzyme levels (aspartate transaminase)	484 Korean ancestry children	NA	3p12.3	ROBO1	rs7617400-A	0.161	6E-6		0.034	[0.02-0.048] unit increase	Illumina [747076]	N
1192	chr3	79625318	79625319	rs67650421	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p12.3	NR	rs67650421-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1193	chr3	79709176	79709177	rs116196359	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		ROBO1	rs116196359-?	NR	4E-9	(male)	3.02951	[NR] unit increase	Affymetrix [NR] (imputed)	N
1193	chr3	79712953	79712954	rs11710563	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3p12.3	ROBO1	rs11710563-T	NR	2E-6		0.32389155	[0.19-0.46] unit decrease	Affymetrix [9576485] (imputed)	N
1193	chr3	79715199	79715200	rs9825870	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p12.3		rs9825870-T	0.44	1E-14		7.73	z score increase	Affymetrix [9061022] (imputed)	N
1193	chr3	79716390	79716391	rs183318239	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3p12.3	ROBO1	rs183318239-T	0.0168915435816256	9E-6		0.0098232	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
1193	chr3	79726647	79726648	rs115809124	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		ROBO1	rs115809124-?	NR	3E-6		0.87	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1193	chr3	79738223	79738224	rs12107379	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3p12.3	SSBP3	rs12107379-?		8E-9				NR [7428630] (imputed)	N
1193	chr3	79738223	79738224	rs12107379	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3p12.3	CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, RPRD2, TARS2, ECM1, ADAMTSL4, AL356356.1	rs12107379-?		3E-8				NR [7428630] (imputed)	N
1193	chr3	79739699	79739700	rs11127656	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3p12.3		rs11127656-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1193	chr3	79771986	79771987	rs11127662	26569114	Brown EL	2015-11-16	PLoS One	Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.	Staphylococcus aureus nasal carriage (intermittent)	97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals	NA	3p12.3	ROBO1	rs11127662-G	0.06	2E-6		4.32	[2.37-7.87]	Affymetrix, Illumina [at least 603042] (imputed)	N
1193	chr3	79803718	79803719	rs75949156	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	3p12.3		rs75949156-?	NR	5E-7		1.7	[1.382-2.091]	Affymetrix [7975321] (imputed)	N
1194	chr3	79861900	79861901	rs1393374	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p12.2		rs1393374-G	0.28	2E-10		6.38	z score increase	Affymetrix [9061022] (imputed)	N
1194	chr3	79861900	79861901	rs1393374	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p12.2	NR	rs1393374-G	0.2755	2E-10				NR [9056863] (imputed)	N
1194	chr3	79915769	79915770	rs11127668	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3p12.2	ROBO1	rs11127668-C	NR	8E-7		1.0504202	[1.03-1.07]	Illumina [6627481] (imputed)	N
1194	chr3	79915769	79915770	rs11127668	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3p12.2	intergenic	rs11127668-C	NR	5E-7		1.0504202	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1197	chr3	80269035	80269036	rs11920819	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference (90 days post influenza vaccination)	298 individuals	NA	3p12.2	NR	rs11920819-?	NR	5E-8			[NR]	NR [1665663]	N
1197	chr3	80294040	80294041	rs6795725	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Lachnospiraceae)	1,068 Japanese ancestry individuals	NA	3p12.2	intergenic	rs6795725-A	0.29	6E-6	(female)	0.0611	[0.035-0.087] unit increase	Illumina [6380737] (imputed)	N
1197	chr3	80308260	80308261	rs12714497	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3p12.2	NR	rs12714497-G	NR	5E-6	(random effect)	1.07	NR	NR [6904914] (imputed)	N
1198	chr3	80368462	80368463	rs10511112	23793025	Anttila V	2013-06-23	Nat Genet	Genome-wide meta-analysis identifies new susceptibility loci for migraine.	Migraine	23,285 European ancestry cases, 95,425 European ancestry controls	NA	3p12.2	intergenic	rs10511112-C	0.07	5E-6		1.11	[1.06-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1198	chr3	80435789	80435790	rs12635820	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	3p12.2	ROBO1	rs12635820-T	0.33	2E-6	(Turkish ancestry)	0.14	[0.081-0.199] unit increase	Illumina [~ 8300000] (imputed)	N
1198	chr3	80469508	80469509	rs9990395	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p12.2	NR	rs9990395-G	NR	8E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1198	chr3	80471338	80471339	rs9309861	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Height	2,732 Kuwaiti ancestry individuals	NA	3p12.2	HNRNPA3P8, LOC105377177	rs9309861-?	NR	3E-7		5.145	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1199	chr3	80555463	80555464	rs9849438	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	37,759 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 22,778 East Asian ancestry cases, 91,590 European ancestry controls, 8,337 African American controls, 3,090 Latino controls, 35,362 East Asian ancestry controls	NA	3p12.2	ROBO1	rs9849438-A	NR	2E-9		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
1200	chr3	80649138	80649139	rs6781254	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p12.2	NA	rs6781254-T	0.3034	5E-9		0.0105	[0.007-0.014] unit increase	NR [~ 27400000] (imputed)	N
1200	chr3	80660049	80660050	rs59888335	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p12.2	NR	rs59888335-T	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1201	chr3	80865763	80865764	rs9850225	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	3p12.2	SLC25A36	rs9850224-A	0.010	5E-6				Illumina [840354]	N
1202	chr3	80875908	80875909	rs34533962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.2	Intergenic	rs34533962-A	0.7265	1E-9	(MTAG)	0.0112	[0.0077-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1202	chr3	80875908	80875909	rs34533962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.2	Intergenic	rs34533962-A	0.7016	1E-8	(MTAG)	0.0082	[0.0055-0.0109] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1202	chr3	80914408	80914409	rs12487279	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3p12.2	NR	rs12487279-C	NR	8E-6		1.11	[NR]	Illumina [7158791] (imputed)	N
1202	chr3	80960556	80960557	rs74844436	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure and central corneal thickness (multi-trait analysis)	up to 31,269 European ancestry individuals	up to 7,792 Chinese ancestry individuals, 3,280 Malay ancestry individuals, 3,400 Indian ancestry individuals	3p12.2	GBE1	rs74844436-G	0.0286	8E-8	(EA)			Affymetrix, Illumina [up to 12426120] (imputed)	N
1202	chr3	80960556	80960557	rs74844436	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	3p12.2	GBE1	rs74844436-G	0.0286	5E-7		0.4121	NR mmHg increase	Affymetrix, Illumina [12426120] (imputed)	N
1203	chr3	81129943	81129944	rs17018482	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p12.2	NR	rs17018482-A	0.191739	8E-11		6.5	z score increase	NR [10847151] (imputed)	N
1204	chr3	81241726	81241727	rs67102420	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p12.2		rs67102420-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1204	chr3	81244365	81244366	rs55756441	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.2		rs55756441-A	0.81	7E-10		0.009	[0.0051-0.0129] unit decrease	NR [NR] (imputed)	N
1205	chr3	81321113	81321114	rs13068318	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3p12.2	NR	rs13068318-T	0.207	2E-9		0.00975306	[0.0066-0.0129] unit increase	NR [~ 9732723] (imputed)	N
1205	chr3	81325860	81325861	rs13066050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.2	NR	rs13066050-T	0.208	1E-13		0.00982435	[0.0072-0.0124] unit increase	NR [9732723] (imputed)	N
1205	chr3	81325860	81325861	rs13066050	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.2	NR	rs13066050-T	0.208	2E-9		0.018834349	[0.013-0.025] unit increase	NR [~ 10000000] (imputed)	N
1206	chr3	81420195	81420196	rs1461616	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	3p12.2	NR	rs1461616-?	NR	6E-7		0.1513	NR	Illumina [802276]	N
1206	chr3	81450346	81450347	rs9814179	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.2	NR	rs9814179-T	0.02091	2E-8	(SERPINA1)	2.048	NR unit increase	Illumina [1671387] (imputed)	N
1206	chr3	81461154	81461155	rs4856345	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length or spherical error (univariate decomposition analysis)	1,055 individuals	NA	3p12.2	NR	rs4856345-?	NR	6E-6				NR [500025]	N
1206	chr3	81461154	81461155	rs4856345	29781551	Guo X	2018-05-21	Genet Epidemiol	A univariate perspective of multivariate genome-wide association analysis.	Axial length	1,055 individuals	NA	3p12.2	NR	rs4856345-?	NR	5E-7		0.26	[0.16-0.36] unit decrease	NR [500025]	N
1206	chr3	81488557	81488558	rs276125	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.2	ROBO1	rs276125-?	NR	6E-6	(kynurenine)	0.17014462	[0.097-0.244] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1207	chr3	81537505	81537506	rs820277	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.2	NR	rs820277-?	NR	7E-6		4.48	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1207	chr3	81615426	81615427	rs142713518	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3p12.2		rs142713518-T	0.0047389	7E-6		0.21817	[0.12-0.31] unit decrease	Affymetrix [15580782] (imputed)	N
1207	chr3	81650487	81650488	rs6800135	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p12.2	NR	rs6800135-?	NR	5E-10				Affymetrix [NR]	N
1208	chr3	81698004	81698005	rs192044702	34626176	Malik R	2021-10-01	Brain	Whole-exome sequencing reveals a role of HTRA1 and EGFL8 in brain white matter hyperintensities.	White matter hyperintensity volume	17,830 individuals	NA	3p12.2		rs192044702-?	NR	1E-8		0.74	[0.49-0.99] unit decrease	NR [NR]	N
1208	chr3	81698480	81698481	rs3772912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p12.2		rs3772912-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1208	chr3	81728955	81728956	rs75776049	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GBE1	rs75776049-?	NR	8E-16		2.63139	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1208	chr3	81728955	81728956	rs75776049	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GBE1	rs75776049-?	NR	3E-12	(male)	2.34332	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1208	chr3	81747218	81747219	rs78242412	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.2	NR	rs78242412-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1208	chr3	81776034	81776035	rs13095389	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.2	NR	rs13095389-?	NR	9E-6		0.0076379	[0.0043-0.011] unit increase	Affymetrix [805426] (imputed)	N
1209	chr3	81790969	81790970	rs13340130	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Meat-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p12.2	GBE1	rs13340130-?	NR	1E-8		0.0146033	[0.0096-0.0196] unit decrease	Affymetrix [25921788] (imputed)	N
1209	chr3	81792111	81792112	rs3849570	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p12.2	NA	rs3849570-A	0.3541	7E-15		0.0134	[0.01-0.017] unit increase	NR [~ 27400000] (imputed)	N
1209	chr3	81792111	81792112	rs3849570	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.2	GBE1	rs3849570-A	0.362	2E-8		0.018	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1209	chr3	81792111	81792112	rs3849570	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.2	GBE1	rs3849570-A	0.361	2E-7	(EA, men)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1209	chr3	81792111	81792112	rs3849570	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.2	GBE1	rs3849570-A	0.359	3E-8	(EA)	0.019	[0.012-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1209	chr3	81792111	81792112	rs3849570	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.2	GBE1	rs3849570-A	0.3599	2E-8	(EA)	0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1209	chr3	81808601	81808602	rs3772882	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3p12.2	NR	rs3772882-A	NR	1E-9		0.01465	NR unit decrease	NR [7259579]	N
1209	chr3	81808601	81808602	rs3772882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.2		rs3772882-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1209	chr3	81826248	81826249	rs7638516	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Processed meat consumption	335,576 European ancestry individuals	NA	3p12.2	GBE1	rs7638516-?	NR	5E-9		0.0146618	[0.0097-0.0196] unit decrease	Affymetrix [25921788] (imputed)	N
1209	chr3	81832063	81832064	rs76537691	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3p12.2	Intergenic	rs76537691-?		8E-6		2.81	[1.78-4.43]	Illumina [7645193] (imputed)	N
1209	chr3	81874008	81874009	rs6792696	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p12.2	NR	rs6792696-G	NR	1E-7		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1209	chr3	81874008	81874009	rs6792696	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p12.2	NR	rs6792696-A	0.363744627082903	7E-11		0.018291831	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1210	chr3	81923226	81923227	rs34671460	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.2	NR	rs34671460-?	NR	3E-6		0.008004	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1210	chr3	81933747	81933748	rs75343051	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC129807.1	rs75343051-?	NR	2E-10	(male)	3.16267	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1210	chr3	81974557	81974558	rs9877408	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p12.2	GBE1	rs9877408-A	0.5984	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1210	chr3	81992048	81992049	rs4324483	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.2	GBE1	rs4324483-T	0.559	2E-8		0.00950261	[0.0062-0.0128] unit decrease	Affymetrix [11880941] (imputed)	N
1210	chr3	82000679	82000680	rs7626596	31518406	Abdellaoui A	2019-09-13	Hum Mol Genet	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.	Loneliness	511,280 European ancestry individuals	NA	3p12.2	intergenic	rs7626596-?	NR	3E-9		0.02	[0.014-0.026] unit increase	Affymetrix, Illumina [up to 14113458] (imputed)	N
1210	chr3	82001711	82001712	rs57590327	27918536	Lo MT	2016-12-05	Nat Genet	Genome-wide analyses for personality traits identify six genomic loci and show correlations with psychiatric disorders.	Extraversion	122,886 European ancestry individuals	46,621 European ancestry individuals	3p12.2	GBE1	rs57590327-T	0.026	1E-9		0.026	[0.014-0.038] unit increase GPC-2 Discovery cohort	Affymetrix, Illumina [6343667] (imputed)	N
1210	chr3	82001952	82001953	rs73140800	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3p12.2		rs73140800-T	NR	8E-6		2.7822	[1.59-3.98] unit increase	Illumina [NR] (imputed)	N
1210	chr3	82003206	82003207	rs4266214	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Sociability score	342,461 European ancestry individuals	NA	3p12.2	RP11-359D24.1	rs4266214-G	NR	2E-9		0.01295	unit decrease	Affymetrix [9327396] (imputed)	N
1210	chr3	82003206	82003207	rs4266214	34054130	Bralten J	2021-05-30	Neuropsychopharmacology	Genetic underpinnings of sociability in the general population.	Loneliness	342,461 European ancestry individuals	NA	3p12.2	RP11-359D24.1	rs4266214-?	NR	3E-7				Affymetrix [up to 9327396] (imputed)	N
1210	chr3	82009702	82009703	rs4465966	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness (MTAG)	487,647 European ancestry individuals	NA	3p12.2	GBE1	rs4465966-A	0.429291	3E-9		0.012251281	[0.0082-0.0163] unit increase	NR [NR] (imputed)	N
1210	chr3	82009702	82009703	rs4465966	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Loneliness	80,134 European ancestry cases, 364,890 European ancestry controls	NA	3p12.2	GBE1	rs4465966-A	0.429	2E-8		0.0046	[0.003-0.0062] unit increase	NR [NR] (imputed)	N
1210	chr3	82019388	82019389	rs13090139	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.2	NR	rs13090139-?	NR	6E-7		4.999	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1210	chr3	82043061	82043062	rs11127757	34698592	Yang J	2021-10-26	Stress	Genome-wide association studies of stress score in a Korean Cohort.	High general stress	8,104 Korean ancestry individuals	NA	3p12.2		rs11127757-G	NR	9E-6		0.78	[0.7-0.87]	Affymetrix [320700]	N
1211	chr3	82061186	82061187	rs142710255	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3p12.2	Intergenic	rs142710255-A	NR	3E-7	(between families)	5.135	unit decrease	Affymetrix [up to 15107142] (imputed)	N
1211	chr3	82090983	82090984	rs184908836	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	3p12.2	GBE1, NONE	rs184908836-A	NR	5E-7		0.333	[0.2-0.46] unit decrease	Illumina [27700000] (imputed)	N
1211	chr3	82105939	82105940	rs143802920	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3p12.2		rs143802920-A	NR	1E-5		2.7816	[1.58-3.99] unit increase	Illumina [NR] (imputed)	N
1211	chr3	82138008	82138009	rs2141491	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.2	NR	rs2141491-?	NR	5E-6		4.545	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1212	chr3	82196527	82196528	rs61672954	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Side of face morphology (partial least square model)	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	3p12.2	intergenic	rs61672954-?	NR	3E-7	(Uyghur)	0.101	[NR] unit increase	Illumina [8100752] (imputed)	N
1212	chr3	82212401	82212402	rs1406549	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	3p12.2	NR	rs1406549-G	NR	9E-8		0.0111	[0.007-0.0152] unit decrease	Illumina [~ 540852]	N
1212	chr3	82219972	82219973	rs4571256	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	3p12.2	NR	rs4571256-A	NR	5E-7		1.77	[NR]	Illumina [NR] (imputed)	N
1212	chr3	82268194	82268195	rs76999496	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.2	NR	rs76999496-?	NR	6E-6		4.533	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1212	chr3	82275580	82275581	rs4317127	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	798 Native American individuals	NA	3p12.2	NR	rs4317127-T	NR	4E-7		0.43	[NR]	Illumina [NR] (imputed)	N
1214	chr3	82477804	82477805	rs9875783	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	3p12.2		rs9875783-?	NR	4E-6				Illumina [7401356] (imputed)	N
1214	chr3	82477804	82477805	rs9875783	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Systolic blood pressure and diastolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	3p12.2	LINC02008	rs9875783-?	NR	4E-6				Illumina [7401356] (imputed)	N
1214	chr3	82495987	82495988	rs7644123	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Frontal pole volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p12.2	NR	rs7644123-?		6E-6				Illumina [4322238] (imputed)	N
1214	chr3	82514911	82514912	rs11914869	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.2	Intergenic	rs11914869-T	0.839	1E-16		0.0256	[0.02-0.032] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1214	chr3	82533638	82533639	rs13318986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.2		rs13318986-A	0.3311	1E-16		0.0124	[0.0095-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1214	chr3	82533638	82533639	rs13318986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.2	Intergenic	rs13318986-A	0.3311	1E-17	(MTAG)	0.0119	[0.0092-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1214	chr3	82539877	82539878	rs6794584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p12.2		rs6794584-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1214	chr3	82563961	82563962	rs9836431	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.2	NR	rs9836431-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1215	chr3	82577274	82577275	rs9869493	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.2	Intergenic	rs9869493-A	0.1703	6E-17	(MTAG)	0.0183	[0.014-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1215	chr3	82579608	82579609	rs1454256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p12.2	Intergenic	rs1454256-T	0.1697	3E-10	(MTAG)	0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1215	chr3	82581830	82581831	rs56242353	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.2	GBE1	rs56242353-T	0.1167	4E-10		0.0164642	[0.011-0.022] unit increase	Affymetrix [11880941] (imputed)	N
1215	chr3	82591378	82591379	rs112201801	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.2	GBE1	rs112201801-C	0.07089999999999996	1E-10		1.0889279		Affymetrix [11880941] (imputed)	N
1215	chr3	82623940	82623941	rs192784693	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.2	Intergenic	rs192784693-T	1.0	4E-6	(AA)	0.542	unit increase	Illumina [NR] (imputed)	N
1215	chr3	82629522	82629523	rs4123668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.2		rs4123668-?	NR	6E-13				NR [~ 8900000] (imputed)	N
1215	chr3	82672206	82672207	rs67338294	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.2	NR	rs67338294-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1215	chr3	82694709	82694710	rs1598121	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p12.2	GBE1	rs1598121-A	0.637079	3E-10		0.00896415	[0.0062-0.0118] unit decrease	Affymetrix [12370749]	N
1215	chr3	82704752	82704753	rs6548834	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p12.2	NA	rs6548834-A	0.3632	2E-10		0.0118	[0.0083-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1216	chr3	82709446	82709447	rs34234711	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.2	NR	rs34234711-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1216	chr3	82710897	82710898	rs62259475	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p12.2	NR	rs62259475-A	0.3654	6E-10		0.01601685	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1216	chr3	82732582	82732583	rs66879815	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.2	GBE1	rs66879815-T	0.7943	1E-9		0.019282361	[0.013-0.026] unit increase	Affymetrix [~ 11515000] (imputed)	N
1216	chr3	82737772	82737773	rs2169642	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.2	Intergenic	rs2169642-A	0.6357	1E-8	(MTAG)	0.0098	[0.0065-0.0131] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1216	chr3	82774830	82774831	rs9883093	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3p12.2	GBE1	rs9883093-G		3E-14		0.0069	[0.0051-0.0087] unit increase	Affymetrix [13304133] (imputed)	N
1218	chr3	82985313	82985314	rs9309922	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.2	Intergenic	rs9309922-T	0.8023	6E-14		0.0214	[0.016-0.027] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1218	chr3	82988926	82988927	rs7617181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.2	Intergenic	rs7617181-A	0.2018	1E-9	(MTAG)	0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1218	chr3	83007016	83007017	rs9816054	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.2	Intergenic	rs9816054-T	0.7106	2E-8	(MTAG)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1218	chr3	83077282	83077283	rs1032021	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.2	CADM2	rs1032021-?	NR	1E-6	(taurocholate)	0.5469097	[0.32-0.77] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1218	chr3	83099302	83099303	rs2317603	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p12.2	intergenic	rs2317603-A	0.570767	7E-10		0.0147352	[0.01-0.019] unit decrease	NR [16516521] (imputed)	N
1219	chr3	83099985	83099986	rs9831410	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p12.2		rs9831410-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1219	chr3	83154012	83154013	rs73121433	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3p12.2	NR	rs73121433-A	0.1632	2E-8		1.039	[1.03-1.05]	NR [8968716] (imputed)	N
1219	chr3	83204939	83204940	rs11924138	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.2	CADM2	rs11924138-?	NR	1E-6	(taurocholate)	0.6022099	[0.36-0.85] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1220	chr3	83241364	83241365	rs12633090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.2	NR	rs12633090-C	0.182	6E-15		0.0109881	[0.0082-0.0137] unit decrease	NR [9732723] (imputed)	N
1220	chr3	83241364	83241365	rs12633090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.2	NR	rs12633090-C	0.182	3E-12	(Conditioned on chr3:85902536, chr3:85475292, chr3:85460131)	0.023019686	[0.017-0.029] unit decrease	NR [~ 10000000] (imputed)	N
1220	chr3	83245535	83245536	rs187255435	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.2	NR	rs187255435-G	0.0122	7E-15	(DIABLO)	0.01465	NR unit increase	Illumina [1671387] (imputed)	N
1220	chr3	83334024	83334025	rs75415431	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.2		rs75415431-G	0.802	4E-18		0.013	[0.011-0.015] unit increase	NR [NR] (imputed)	N
1221	chr3	83445571	83445572	rs76162423	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.2		rs76162423-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1221	chr3	83468918	83468919	rs115700790	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.2	NR	rs115700790-?	NR	7E-14				Affymetrix [~ 8270000] (imputed)	N
1222	chr3	83504684	83504684	rs34361026	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p12.2	intergenic	rs34361026-C	0.1877	3E-8		0.0673	[0.043-0.091] unit decrease	NR [9744772] (imputed)	N
1222	chr3	83533763	83533764	rs62257872	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.2	CADM2	rs62257872-T	0.613	3E-8		0.0068	[0.0044-0.0092] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1223	chr3	83638567	83638568	rs4856463	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p12.1	CADM2	rs4856463-T	0.2175	7E-10		0.016243614	[0.011-0.021] unit decrease	Affymetrix [11514654] (imputed)	N
1223	chr3	83638567	83638568	rs4856463	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	CADM2	rs4856463-T	0.2172	6E-9		0.018146195	[0.012-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1223	chr3	83651597	83651598	rs73117799	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate change in renal transplantation (recipient effect)	Up to 2,298 European ancestry individuals	NA	3p12.1	intergenic	rs73117799-T	NR	3E-6	(adjusted for clinical variables)			Illumina [up to 3923932] (imputed)	N
1224	chr3	83780582	83780583	rs1357798	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p12.1	CADM2	rs1357798-C	0.213947	4E-8		0.00938759	[0.006-0.0127] unit decrease	Affymetrix [12370749]	N
1224	chr3	83804560	83804561	rs12631477	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.1	intergenic	rs12631477-T	0.7982	3E-9		1.0280873		Affymetrix [11880941] (imputed)	N
1224	chr3	83808308	83808309	rs768171976	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3p12.1	SRRM1P2	rs768171976-T	0.9973	2E-6		2.2011	[1.3-3.1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1224	chr3	83808308	83808309	rs768171976	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	3p12.1	SRRM1P2	rs768171976-T	0.9974	2E-6		2.1751	[1.28-3.07] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1224	chr3	83841916	83841917	rs73125921	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	3p12.1	NR	rs73125921-?	0.084	9E-6		22.98	[12.95-33.01] unit decrease	Illumina [7663546] (imputed)	N
1224	chr3	83869452	83869453	rs4552369	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	CADM2	rs4552369-A	0.3218	7E-10		0.016976219	[0.012-0.022] unit increase	Affymetrix [~ 11515000] (imputed)	N
1224	chr3	83871182	83871183	rs7653193	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs7653193-A	0.317	3E-9		0.012405706	[0.0083-0.0165] unit increase	Illumina [9339358] (imputed)	N
1225	chr3	83916966	83916967	rs11929291	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs11929291-T	0.412	2E-9		0.0072	[0.0048-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1225	chr3	83923254	83923255	rs9856718	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3p12.1	CADM2	rs9856718-A	0.838	3E-8		0.017850505	[0.012-0.024] unit increase	Affymetrix [11515109] (imputed)	N
1226	chr3	84030817	84030818	rs75504236	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p12.1		rs75504236-?	NR	6E-9				Affymetrix [NR] (imputed)	N
1226	chr3	84072533	84072534	rs17793314	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	3p12.1	intergenic	rs17793314-G	0.35	8E-6		0.0346	[0.02-0.05] unit decrease	Illumina [6380737] (imputed)	N
1226	chr3	84072533	84072534	rs17793314	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Coprococcus)	1,068 Japanese ancestry individuals	NA	3p12.1	intergenic	rs17793314-G	0.35	4E-6	(male)	0.0506	[0.029-0.072] unit decrease	Illumina [6380737] (imputed)	N
1226	chr3	84113490	84113491	rs114593013	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p12.1	CADM2	rs114593013-A	0.941951	2E-11		0.0197179	[0.014-0.025] unit increase	Affymetrix [12370749]	N
1226	chr3	84113490	84113491	rs114593013	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs114593013-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
1226	chr3	84113490	84113491	rs114593013	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p12.1	NR	rs114593013-G	0.05772	4E-12		0.03690636	[0.026-0.047] unit decrease	Affymetrix [10549349] (imputed)	N
1226	chr3	84147442	84147443	rs9863067	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	3p12.1	GBE1, CADM2	rs9863067-C	0.904	1E-6		0.194	[0.11-0.28] unit increase	Illumina [6391392] (imputed)	N
1227	chr3	84196347	84196348	rs62258408	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs62258408-T	0.962	7E-10		0.019	[0.013-0.025] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1227	chr3	84202202	84202203	rs4522784	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p12.1	intergenic	rs4522784-C	0.01	7E-6	(IGF1 free )	0.04	[NR] ng/mL increase	Illumina [899892]	N
1227	chr3	84208360	84208361	rs34488866	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p12.1	NR	rs34488866-?	NR	3E-6		737.8666	NR unit decrease	Illumina [2379855]	N
1227	chr3	84243838	84243839	rs66852417	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.1		rs66852417-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1227	chr3	84272986	84272987	rs117898875	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p12.1	CADM2	rs117898875-T	0.9616	2E-8		0.031903576	[0.021-0.043] unit decrease	Affymetrix [11514654] (imputed)	N
1228	chr3	84333132	84333133	rs75305337	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in schizophrenia	1,683 European ancestry attempters, 2,946 European ancestry nonattempters	NA	3p12.1	NR	rs75305337-A	0.09	6E-6		1.39	1.20-1.60	NR [8814543] (imputed)	N
1228	chr3	84387949	84387950	rs12714592	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.1		rs12714592-A	0.722	2E-21		0.012	[0.01-0.014] unit decrease	NR [NR] (imputed)	N
1228	chr3	84387949	84387950	rs12714592	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p12.1	LINC00971	rs12714592-A	0.725223	1E-20		0.0217159	[0.017-0.026] unit increase	NR [16516521] (imputed)	N
1228	chr3	84387949	84387950	rs12714592	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3p12.1	NR	rs12714592-C	0.2734	5E-11		1.038	[1.03-1.05]	NR [8968716] (imputed)	N
1228	chr3	84387949	84387950	rs12714592	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p12.1	LOC440970	rs12714592-A	0.727702	2E-10		0.0273635	[0.019-0.036] unit increase	Affymetrix [641018] (imputed)	N
1229	chr3	84440526	84440527	rs13060130	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	3p12.1		rs13060130-C	0.860311	10E-7		0.014	[0.0081-0.0199] unit decrease	NR [7250403] (imputed)	N
1229	chr3	84451511	84451512	rs6794880	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	SRRM1P2	rs6794880-A	0.847	1E-7				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr3	84451511	84451512	rs6794880	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p12.1	SRRM1P2	rs6794880-A	0.847	5E-8		0.023	[0.015-0.031] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr3	84451511	84451512	rs6794880	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	SRRM1P2	rs6794880-A	0.847	5E-9		0.022	[0.014-0.03] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1229	chr3	84481067	84481068	rs10511089	20171287	Stein JL	2010-02-17	Neuroimage	Voxelwise genome-wide association study (vGWAS).	Brain structure	740 European ancestry individuals	NA	3p12.1	intergenic	rs10511089-?	0.11	7E-7				Illumina [448293]	N
1230	chr3	84591507	84591507	rs144433312	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3p12.1	AC107025.1, LINC00971	rs144433312-?	NR	1E-8			[NR]	NR [NR] (imputed)	N
1230	chr3	84628710	84628711	rs116032709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs116032709-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1230	chr3	84646347	84646348	rs113091167	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	3p12.1	LINC00971	rs113091167-A	0.869	7E-6		0.527	[0.3-0.75] unit increase	Illumina [6007542] (imputed)	N
1230	chr3	84669052	84669052	rs763481319	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p12.1	LINC00971	rs763481319-C	0.4264	5E-9		0.0583	[0.039-0.078] unit increase	NR [9744772] (imputed)	N
1231	chr3	84681957	84681958	rs72907315	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3p12.1		rs72907315-?	NR	4E-8				Affymetrix [NR] (imputed)	N
1231	chr3	84712076	84712077	rs9831119	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	3p12.1	LINC00971	rs9831119-C	0.14	3E-6		0.08	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
1231	chr3	84740986	84740987	rs73845547	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p12.1	NR	rs73845547-?	NR	7E-6		4224.4443	NR unit decrease	Illumina [2379855]	N
1231	chr3	84757198	84757199	rs73130838	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	NR	rs73130838-?	NR	1E-6		4.884	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1231	chr3	84769087	84769088	rs113639185	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs113639185-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1231	chr3	84778739	84778740	rs188320251	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Hepatitis A	2,442 European ancestry cases, 217,137 European ancestry controls	NA	3p12.1	NR	rs188320251-?	NR	9E-6		4.3401	[0.99-7.69] unit increase	Illumina [at least 560000] (imputed)	N
1231	chr3	84786978	84786979	rs2034718	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.1	NR	rs2034718-?	NR	2E-7		0.0090619	[0.0056-0.0125] unit decrease	Affymetrix [805426] (imputed)	N
1231	chr3	84791850	84791851	rs6783281	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p12.1	CADM2	rs6783281-A	0.708451	6E-10		0.00955864	[0.0065-0.0126] unit decrease	Affymetrix [12370749]	N
1232	chr3	84836961	84836962	rs7621959	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs7621959-A	0.098	2E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1232	chr3	84843593	84843594	rs111650759	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs111650759-T	0.059	2E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1232	chr3	84862870	84862871	rs139629585	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs139629585-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1232	chr3	84889596	84889597	rs1146751	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	3p12.1	CADM2	rs1146751-?	NR	9E-59		1.179	[1.155-1.202]	Illumina [13729857] (imputed)	N
1232	chr3	84892865	84892866	rs421983	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3p12.1		rs421983-T	0.519	3E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
1232	chr3	84893888	84893889	rs73132094	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p12.1	intergenic	rs73132094-?	NR	3E-8	(male)	0.0283924	[0.018-0.038] unit increase	Affymetrix [25921788] (imputed)	N
1232	chr3	84900876	84900877	rs62122	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.1	NR	rs62122-?	NR	5E-7		0.0088325	[0.0054-0.0123] unit increase	Affymetrix [805426] (imputed)	N
1232	chr3	84902945	84902946	rs1146748	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	NR	rs1146748-?	NR	1E-7		5.293	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1232	chr3	84903244	84903245	rs9654015	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs9654015-?	NR	5E-12				Affymetrix [~ 8270000] (imputed)	N
1232	chr3	84911290	84911291	rs1032507	30899065	Wang M	2019-03-21	Sci Rep	A genome-wide association study on photic sneeze reflex in the Chinese population.	Photic sneeze reflex	874 Chinese ancestry cases, 2,543 Chinese ancestry controls	NA	3p12.1	GBE1, CADM2	rs1032507-G	0.5	6E-14		1.5384616	[1.39-1.72]	Affymetrix [419093]	N
1232	chr3	84920367	84920368	rs7642644	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	3p12.1	LOC440970	rs7642644-T	0.144	6E-6	(Commissions)	3.15	[1.78-4.52] unit decrease	Illumina [799713]	N
1232	chr3	84922884	84922885	rs142356570	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	3p12.1	NR	rs142356570-C	0.184137	3E-6		1.067	[1.04-1.09]	Affymetrix [7791636] (imputed)	N
1233	chr3	84945569	84945570	rs200301386	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3p12.1	NR	rs200301386-?	NR	2E-6		0.2265	[0.13-0.32] unit increase	Illumina [at least 560000] (imputed)	N
1233	chr3	84951715	84951716	rs1694933	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs1694933-A	0.484	2E-16		0.0097	[0.0073-0.0121] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1233	chr3	84951715	84951716	rs1694933	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs1694933-A	0.4857	8E-15		0.015085031	[0.011-0.019] unit decrease	Illumina [9339358] (imputed)	N
1233	chr3	84954202	84954203	rs1691483	29559738	Sasayama D	2018-03-20	J Hum Genet	A genome-wide association study on photic sneeze syndrome in a Japanese population.	Photic sneeze reflex	360 Japanese ancestry cases, 11,049 Japanese ancestry controls	NA	3p12.1		rs1691483-A	NR	3E-8		1.83	[1.48-2.26]	Illumina [210086]	N
1233	chr3	84966017	84966018	rs382210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p12.1	Intergenic	rs382210-A	0.6561	2E-14	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr3	84966017	84966018	rs382210	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p12.1	Intergenic	rs382210-G	0.3439	2E-14		0.0157	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1233	chr3	84971745	84971746	rs9826959	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs9826959-A	0.081	1E-9		0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1233	chr3	84972675	84972676	rs9832119	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	3p12.1	CADM2	rs9832119-A	0.7025	9E-11		0.015824541	[0.011-0.021] unit increase	Affymetrix [11514936] (imputed)	N
1233	chr3	84986087	84986088	rs6803322	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p12.1	LOC440970, MIR5688	rs6803322-C		5E-8		0.228	unit increase	Affymetrix [at least 2696785] (imputed)	N
1233	chr3	84986087	84986088	rs6803322	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p12.1	LOC440970, MIR5688	rs6803322-C		3E-6		0.13	unit increase	Affymetrix [at least 2696785] (imputed)	N
1233	chr3	84993410	84993411	rs1248825	34741163	Eijsbouts C	2021-11-05	Nat Genet	Genome-wide analysis of 53,400 people with irritable bowel syndrome highlights shared genetic pathways with mood and anxiety disorders.	Irritable bowel syndrome	53,400 European ancestry cases, 433,201 European ancestry controls	205,252 European ancestry cases, 1,384,055 European ancestry controls	3p12.1	NR	rs1248825-A	0.3253	7E-15		0.026560178	[0.02-0.033] unit increase	Illumina [9885498] (imputed)	N
1233	chr3	84993410	84993411	rs1248825	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Raw vegetable consumption	335,576 European ancestry individuals	NA	3p12.1	CADM2	rs1248825-?	NR	2E-10		0.0166264	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1233	chr3	84993410	84993411	rs1248825	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3p12.1	CADM2	rs1248825-?	NR	4E-14		0.0196439	[0.015-0.025] unit decrease	Affymetrix [25921788] (imputed)	N
1233	chr3	84997897	84997898	rs1472302	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs1472302-T	0.4765	2E-10		0.012418366	[0.0086-0.0162] unit increase	Illumina [9339358] (imputed)	N
1233	chr3	85006020	85006021	rs450495	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3p12.1	intergenic	rs450495-?	NR	3E-6		0.167	[0.083-0.251] unit increase	Illumina [at least 13000000] (imputed)	N
1233	chr3	85006864	85006865	rs73137637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	Intergenic	rs73137637-T	0.018	1E-6		0.045	unit increase	Illumina [NR] (imputed)	N
1233	chr3	85006864	85006865	rs73137637	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	Intergenic	rs73137637-T	0.018	2E-6		0.211	NR unit increase	Illumina [NR] (imputed)	N
1233	chr3	85009816	85009817	rs9870384	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9870384-T	NR	2E-9		0.01485	[0.01-0.0197] unit decrease	Affymetrix [10847151] (imputed)	N
1233	chr3	85010038	85010039	rs424029	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.1	NR	rs424029-?	NR	5E-6		0.0079726	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
1233	chr3	85010038	85010039	rs424029	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	CADM2	rs424029-A	NR	1E-9		6.062	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1233	chr3	85013160	85013161	rs17733561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs17733561-A	0.981	2E-6		0.043	unit decrease	Illumina [NR] (imputed)	N
1233	chr3	85013160	85013161	rs17733561	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs17733561-A	0.981	3E-6		0.205	NR unit decrease	Illumina [NR] (imputed)	N
1233	chr3	85015778	85015779	rs1248860	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs1248860-G	NR	4E-9		0.01404	[0.0094-0.0187] unit increase	Affymetrix [10847151] (imputed)	N
1233	chr3	85015778	85015779	rs1248860	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Vigorous physical activity	98,060 European ancestry active cases, 162,995 European ancestry inactive controls	NA	3p12.1	CADM2	rs1248860-?	0.52	1E-13		1.0416667		Affymetrix [11800000] (imputed)	N
1233	chr3	85019754	85019755	rs1248856	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p12.1	Intergenic	rs1248856-A	0.0387	2E-9	(MTAG)	0.0356	[0.024-0.047] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1233	chr3	85019808	85019809	rs1248855	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p12.1	NR	rs1248855-C	0.0487078	1E-8		0.08287344	[0.054-0.111] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1233	chr3	85019808	85019809	rs1248855	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p12.1	NR	rs1248855-T	NR	6E-9		5.831	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1233	chr3	85036751	85036752	rs1694977	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3p12.1	NA	rs1694977-T		4E-12		0.0135031	[0.0097-0.0173] unit increase	Illumina [13288253] (imputed)	N
1233	chr3	85037879	85037880	rs116275905	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs116275905-A	0.0489	4E-17		0.03783505	[0.029-0.047] unit increase	Illumina [9339358] (imputed)	N
1233	chr3	85040648	85040649	rs6768455	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	3p12.1	CADM2	rs6768455-T	0.43	2E-6	(EA)	0.1	0.06-0.14 unit increase	Illumina [NR] (imputed)	N
1233	chr3	85044735	85044736	rs6549007	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	3p12.1	CADM2	rs6549007-?	NR	9E-9		0.0165949	[0.011-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1233	chr3	85044735	85044736	rs6549007	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs6549007-A	0.768	8E-10		0.0086	[0.0059-0.0113] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1233	chr3	85049087	85049088	rs1872552	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	3p12.1	CADM2	rs1872552-A	0.399	3E-11		0.0172	[0.012-0.022] unit increase	Illumina [~ 250000] (imputed)	N
1233	chr3	85052149	85052150	rs9831123	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar I disorder	25,060 European ancestry cases, 449,978 European ancestry controls	NA	3p12.1	NR	rs9831123-C	0.504	2E-9		0.93351	[0.91-0.96]	Affymetrix, Illumina [7549318] (imputed)	N
1233	chr3	85056520	85056521	rs2035562	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	3p12.1	CADM2	rs2035562-A	0.33	4E-9		0.014	unit decrease	Affymetrix [11800000] (imputed)	N
1233	chr3	85057280	85057281	rs4301023	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls		CADM2	rs4301023-T	0.474	2E-7		1.05929	[1.04-1.08]	NR [9372253] (imputed)	N
1233	chr3	85057280	85057281	rs4301023	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA		CADM2	rs4301023-T	0.474	4E-7		1.0795		NR [9372253] (imputed)	N
1233	chr3	85057348	85057349	rs7651996	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA		CADM2	rs7651996-T	0.477	2E-9		0.049	[0.033-0.065] unit increase	Affymetrix, Illumina [11733371] (imputed)	N
1233	chr3	85065228	85065229	rs1872556	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.1	Intergenic	rs1872556-A	0.3261	5E-9	(MTAG)	0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1234	chr3	85067017	85067018	rs9816652	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p12.1	CADM2	rs9816652-A	0.477742	2E-8		5.6	z score increase	NR [10847151] (imputed)	N
1234	chr3	85080897	85080898	rs2326124	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs2326124-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1234	chr3	85082587	85082588	rs1016306	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3p12.1	NR	rs1016306-T	0.527986070542641	5E-8		0.005018757	[0.0032-0.0068] unit decrease	NR [NR]	N
1234	chr3	85085713	85085714	rs7645787	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs7645787-T	0.0029	5E-12		0.12461655	[0.089-0.16] unit increase	Illumina [9339358] (imputed)	N
1234	chr3	85095765	85095766	rs9284802	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	3p12.1	CADM2	rs9284802-A	NR	2E-12		1.1111112	[1.08-1.16]	Affymetrix [up to 40000000] (imputed)	N
1234	chr3	85110970	85110971	rs73125111	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73125111-C	0.981	9E-7		0.045	unit decrease	Illumina [NR] (imputed)	N
1234	chr3	85110970	85110971	rs73125111	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73125111-C	0.98	1E-6		0.216	NR unit decrease	Illumina [NR] (imputed)	N
1234	chr3	85111107	85111108	rs7630382	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.1		rs7630382-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1234	chr3	85118034	85118035	rs17791975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs17791975-A	0.981	9E-7		0.045	unit decrease	Illumina [NR] (imputed)	N
1234	chr3	85118034	85118035	rs17791975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs17791975-A	0.98	1E-6		0.216	NR unit decrease	Illumina [NR] (imputed)	N
1234	chr3	85122908	85122909	rs6791035	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	3p12.1	CADM2	rs6791035-C	0.406745	1E-10		0.13138619	[0.091-0.171] unit increase	Affymetrix [7288503] (imputed)	N
1234	chr3	85124696	85124697	rs11127876	34016946	Wu LS	2021-05-20	Transl Psychiatry	Genome-wide association study of early-onset bipolar I disorder in the Han Taiwanese population.	Bipolar disorder (early vs late onset)	516 Han Taiwanese ancestry cases, 790 Han Taiwanese ancestry controls	153 Han Taiwanese ancestry cases, 320 Han Taiwanese ancestry controls	3p12.1	CADM2	rs11127876-?	NR	5E-8		2.39	[1.73-3.31] unit increase	Illumina [4750978] (imputed)	N
1234	chr3	85134556	85134557	rs9309969	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	3p12.1	CADM2	rs9309969-G	0.405599	5E-11				Affymetrix [28000000] (imputed)	N
1234	chr3	85134556	85134557	rs9309969	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p12.1	CADM2	rs9309969-T	0.4052	3E-9		0.0799	[0.052-0.108] unit increase	Affymetrix [~ 11900000] (imputed)	N
1234	chr3	85134913	85134914	rs2220243	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.1	Intergenic	rs2220243-G	0.311	4E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1234	chr3	85137682	85137683	rs66500121	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	3p12.1	CADM2	rs66500121-A	0.41	2E-11		1.12	NR	Affymetrix [at least 8002429] (imputed)	N
1234	chr3	85138817	85138818	rs9883252	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	3p12.1	CADM2	rs9883252-T	NR	6E-14		1.11	1.08-1.14	Affymetrix [at least 665500] (imputed)	N
1234	chr3	85140185	85140186	rs7636138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	3p12.1		rs7636138-C	NR	1E-8		0.0863	[0.057-0.116] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1234	chr3	85144349	85144350	rs9819278	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	3p12.1	CADM2	rs9819278-A	NR	2E-14		0.90538	[0.88-0.93]	Affymetrix, Illumina [14822926] (imputed)	N
1234	chr3	85145835	85145836	rs73843290	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	CADM2	rs73843290-T	NR	2E-8		5.599	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1234	chr3	85151827	85151828	rs13061527	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3p12.1	CADM2	rs13061527-T	0.4002	2E-8		0.0754	[0.048-0.103] unit increase	Affymetrix [~ 11900000] (imputed)	N
1234	chr3	85158565	85158566	rs9837462	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9837462-A	NR	4E-8		0.01387	[0.0089-0.0188] unit decrease	Affymetrix [10847151] (imputed)	N
1234	chr3	85158732	85158733	rs9875381	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p12.1	CADM2	rs9875381-A	0.4	8E-9		0.013258126	[0.0088-0.0178] unit decrease	Affymetrix [11514463] (imputed)	N
1234	chr3	85167763	85167764	rs6775464	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs6775464-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1234	chr3	85171414	85171415	rs6770622	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p12.1	NR	rs6770622-A	NR	6E-11		6.55	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1234	chr3	85172363	85172364	rs13101042	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3p12.1		rs13101042-C	NR	3E-12		0.1058	[0.076-0.135] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1234	chr3	85180269	85180270	rs6549016	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3p12.1	NR	rs6549016-?	NR	2E-6		0.008369	[0.0049-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
1235	chr3	85202523	85202524	rs4856268	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p12.1	CADM2	rs4856268-T	0.377515	5E-9		5.86	z score increase	NR [10847151] (imputed)	N
1235	chr3	85219632	85219633	rs141697181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs141697181-T	0.02	3E-6		0.042	unit increase	Illumina [NR] (imputed)	N
1235	chr3	85219632	85219633	rs141697181	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs141697181-T	0.02	3E-6		0.208	NR unit increase	Illumina [NR] (imputed)	N
1235	chr3	85236424	85236425	rs1376935	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	3p12.1	CADM2	rs1376935-A	0.32	4E-10	(women)	0.026	[0.018-0.034] unit increase	Affymetrix [12489781] (imputed)	N
1235	chr3	85264265	85264266	rs13078384	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p12.1	NR	rs13078384-A	0.302914	2E-9		5.98	z score decrease	NR [10847151] (imputed)	N
1235	chr3	85264265	85264266	rs13078384	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption in current drinkers	108,309 European ancestry individuals	NA	3p12.1	CADM2	rs13078384-A	0.31	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix [12489781] (imputed)	N
1235	chr3	85287295	85287296	rs73130739	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs73130739-T	0.9835	2E-12		0.05381465	[0.039-0.069] unit decrease	Illumina [9339358] (imputed)	N
1235	chr3	85287295	85287296	rs73130739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73130739-T	0.98	3E-6		0.043	unit decrease	Illumina [NR] (imputed)	N
1235	chr3	85287295	85287296	rs73130739	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73130739-T	0.98	3E-6		0.208	NR unit decrease	Illumina [NR] (imputed)	N
1235	chr3	85289266	85289267	rs77036893	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p12.1	CADM2	rs77036893-C	0.1002	3E-8		0.01868188	[0.012-0.025] unit increase	Affymetrix [up to 18485882] (imputed)	N
1235	chr3	85303548	85303549	rs11710504	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs11710504-T	0.9311	1E-8		0.021710156	[0.014-0.029] unit decrease	Illumina [9339358] (imputed)	N
1235	chr3	85327517	85327518	rs73845427	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p12.1	NR	rs73845427-G	0.028827	9E-9		0.10768833	[0.071-0.144] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1235	chr3	85327517	85327518	rs73845427	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p12.1	Intergenic	rs73845427-A	0.0322	8E-9		0.0466	[0.031-0.062] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1235	chr3	85327517	85327518	rs73845427	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p12.1	NR	rs73845427-A	NR	2E-8		5.645	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1236	chr3	85362015	85362016	rs2290339	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.1	NR	rs2290339-C	0.08362	2E-8	(ME1)	0.04228	NR unit increase	Illumina [1671387] (imputed)	N
1236	chr3	85368818	85368819	rs116155186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs116155186-T	0.981	3E-6		0.045	unit decrease	Illumina [NR] (imputed)	N
1236	chr3	85368818	85368819	rs116155186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs116155186-T	0.981	1E-6		0.225	NR unit decrease	Illumina [NR] (imputed)	N
1236	chr3	85371399	85371400	rs818215	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	3p12.1	CADM2	rs818215-A	0.466745	5E-9		5.85	z score increase	NR [10847151] (imputed)	N
1236	chr3	85374588	85374589	rs818219	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs818219-C	NR	7E-10		0.01482	[0.01-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85382139	85382140	rs818225	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs818225-C	NR	5E-9		0.0102	[0.0068-0.0136] unit decrease	Affymetrix [18485882] (imputed)	N
1236	chr3	85388163	85388164	rs3943782	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3p12.1	CADM2	rs3943782-G		6E-9		0.0053	[0.0035-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
1236	chr3	85388163	85388164	rs3943782	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs3943782-A	0.635	3E-9		0.0073	[0.0049-0.0097] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1236	chr3	85391671	85391672	rs9811546	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9811546-A	NR	4E-13		0.0186	[0.014-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85391671	85391672	rs9811546	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling tense	371,318 European ancestry individuals	NA	3p12.1	CADM2	rs9811546-A	0.311971	6E-9		5.83	z score decrease	NR [10847151] (imputed)	N
1236	chr3	85393767	85393768	rs62253085	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs62253085-A	NR	4E-8		0.01337	[0.0086-0.0181] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85393814	85393815	rs62253086	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	CADM2	rs62253086-T	NR	2E-8		5.628	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1236	chr3	85393910	85393911	rs67379620	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs67379620-T	0.1549	1E-14		0.020626264	[0.015-0.026] unit decrease	Illumina [9339358] (imputed)	N
1236	chr3	85394771	85394772	rs67028245	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	3p12.1	CADM2	rs67028245-A	0.4	4E-8	(women)	0.023	[0.015-0.031] unit decrease	Affymetrix [12489781] (imputed)	N
1236	chr3	85395340	85395341	rs1368737	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs1368737-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1236	chr3	85396777	85396778	rs146071762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3p12.1		rs146071762-A	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1236	chr3	85397048	85397049	rs76508707	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs76508707-C	NR	5E-10		0.0095052	[0.0065-0.0125] unit increase	Affymetrix [18485882] (imputed)	N
1236	chr3	85397048	85397049	rs76508707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3p12.1		rs76508707-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1236	chr3	85397048	85397049	rs76508707	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs76508707-T	NR	1E-12		0.01716	[0.012-0.022] unit increase	Affymetrix [10847151] (imputed)	N
1236	chr3	85397117	85397118	rs9830359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.1	Intergenic	rs9830359-T	0.1099	3E-10	(MTAG)	0.0166	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1236	chr3	85397117	85397118	rs9830359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.1		rs9830359-T	0.1117	5E-11		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1236	chr3	85397117	85397118	rs9830359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.1	Intergenic	rs9830359-T	0.1117	2E-13	(MTAG)	0.0152	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1236	chr3	85397117	85397118	rs9830359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p12.1	Intergenic	rs9830359-T	0.1129	1E-10	(MTAG)	0.0232	[0.016-0.03] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1236	chr3	85397117	85397118	rs9830359	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p12.1	CADM2	rs9830359-T	NR	4E-8		0.026345104	[0.017-0.036] unit decrease	Affymetrix [NR]	N
1236	chr3	85400800	85400801	rs62253088	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Strenuous sports or other exercises	124,842 European ancestry active cases, 225,650 European ancestry inactive controls	NA	3p12.1	CADM2	rs62253088-T	0.33	1E-19		1.05		Affymetrix [11800000] (imputed)	N
1236	chr3	85402468	85402469	rs9861237	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9861237-C	NR	3E-8		0.01359	[0.0088-0.0184] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85405500	85405501	rs9822731	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	3p12.1	CADM2	rs9822731-T	0.7753	4E-15		0.021035347	[0.016-0.026] unit decrease	Affymetrix [11514936] (imputed)	N
1236	chr3	85405500	85405501	rs9822731	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3p12.1	NR	rs9822731-C	0.222516373434048	4E-9		0.012990439	[0.0087-0.0173] unit decrease	NR [NR]	N
1236	chr3	85412329	85412330	rs1368748	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs1368748-A	NR	1E-8		0.01429	[0.0094-0.0192] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85414290	85414291	rs7627971	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a gym or sports club	135,060 European ancestry cases, 317,242 European ancestry controls	NA	3p12.1	CADM2, MIR5688	rs7627971-T	0.272731	6E-10		0.00665275	[0.0045-0.0088] unit increase	NR [NR] (imputed)	N
1236	chr3	85415874	85415875	rs73134727	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73134727-T	0.02	4E-6		0.205	NR unit increase	Illumina [NR] (imputed)	N
1236	chr3	85416383	85416384	rs9870448	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p12.1	NR	rs9870448-A	NR	5E-11		6.557	z score increase	Affymetrix [10847151] (imputed)	N
1236	chr3	85416775	85416776	rs9853563	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	CADM2	rs9853563-T	0.9513	2E-8		0.03371559	[0.022-0.045] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1236	chr3	85416775	85416776	rs9853563	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p12.1	CADM2	rs9853563-T	0.9514	3E-8		0.028906472	[0.019-0.039] unit decrease	Affymetrix [11514463] (imputed)	N
1236	chr3	85420723	85420724	rs9854869	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9854869-A	NR	1E-16		0.02362	[0.018-0.029] unit decrease	Affymetrix [10847151] (imputed)	N
1236	chr3	85420723	85420724	rs9854869	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	3p12.1	CADM2	rs9854869-A	0.220189	1E-10		6.46	z score decrease	NR [10847151] (imputed)	N
1236	chr3	85421736	85421737	rs4279114	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3p12.1	CADM2	rs4279114-G	0.2471	2E-11		0.0078	[0.0054-0.0102] unit increase	Affymetrix [~ 7740000] (imputed)	N
1236	chr3	85428725	85428726	rs2163971	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Drug experimentation measurement	22,572 European ancestry individuals	NA	3p12.1	CADM2	rs2163971-T	0.4321	3E-7		0.048	[0.029-0.066] unit increase	Illumina [11434023] (imputed)	N
1236	chr3	85428725	85428726	rs2163971	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3p12.1	CADM2	rs2163971-T	0.4479	5E-14		0.017939975	[0.013-0.023] unit increase	Affymetrix [11515109] (imputed)	N
1236	chr3	85433073	85433074	rs73845475	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.1	NR	rs73845475-C	0.01045	2E-11	(IGHG2)	1.953	NR unit increase	Illumina [1671387] (imputed)	N
1236	chr3	85436058	85436059	rs76363701	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs76363701-T	0.951	6E-10		0.0169	[0.012-0.022] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1236	chr3	85436058	85436059	rs76363701	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs76363701-T	0.951	5E-10		0.027949879	[0.019-0.037] unit decrease	Illumina [9339358] (imputed)	N
1236	chr3	85437737	85437738	rs73134752	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73134752-A	0.02	4E-6		0.208	NR unit increase	Illumina [NR] (imputed)	N
1236	chr3	85449655	85449656	rs9849542	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	3p12.1	NR	rs9849542-?	NR	7E-6		0.1014	[0.057-0.146] unit decrease	Illumina [at least 560000] (imputed)	N
1236	chr3	85451193	85451194	rs62250661	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs62250661-A	NR	4E-12		0.01667	[0.012-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1236	chr3	85457239	85457240	rs62250685	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3p12.1	NR	rs62250685-G	0.614	1E-31		0.0158444	[0.013-0.019] unit decrease	NR [~ 9732723] (imputed)	N
1236	chr3	85457239	85457240	rs62250685	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3p12.1	NR	rs62250685-G	0.614	1E-21		0.014357061	[0.011-0.017] unit decrease	NR [~ 10000000] (imputed)	N
1237	chr3	85460130	85460131	rs1549979	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p12.1	CADM2	rs1549979-T	0.622	3E-17		0.0187	[0.014-0.023] unit decrease	Illumina [~ 250000] (imputed)	N
1237	chr3	85460130	85460131	rs1549979	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.1	NR	rs1549979-T	0.615	9E-21		0.024522314	[0.019-0.03] unit decrease	NR [~ 10000000] (imputed)	N
1237	chr3	85462758	85462759	rs77242693	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.1	NR	rs77242693-T	0.01045	2E-11	(IGHG2)	1.953	NR unit increase	Illumina [1671387] (imputed)	N
1237	chr3	85463442	85463443	rs6781515	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.1	VGLL3	rs6781515-?	NR	3E-6	(indole-3-propionate)	0.24037303	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1237	chr3	85464423	85464424	rs9825345	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.1	VGLL3	rs9825345-?	NR	3E-6	(indole-3-propionate)	0.24037303	[0.14-0.34] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1237	chr3	85470360	85470361	rs73138705	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73138705-T	0.02	4E-6		0.208	NR unit increase	Illumina [NR] (imputed)	N
1237	chr3	85474970	85474971	rs36041727	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs36041727-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1237	chr3	85475291	85475292	rs74664784	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.1	NR	rs74664784-C	0.376	9E-13	(Conditioned on chr3:85460131)	0.019910902	[0.014-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1237	chr3	85475291	85475292	rs74664784	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3p12.1	NR	rs74664784-C	0.359	2E-14	(Conditioned on chr3:85457240)	0.012656173	[0.0094-0.0159] unit decrease	NR [~ 10000000] (imputed)	N
1237	chr3	85478461	85478462	rs78841189	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs78841189-A	0.138	9E-15		0.0133	[0.01-0.0166] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1237	chr3	85478461	85478462	rs78841189	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs78841189-A	0.1336	5E-11		0.018749287	[0.013-0.024] unit decrease	Illumina [9339358] (imputed)	N
1237	chr3	85487469	85487470	rs9825494	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3p12.1	NR	rs9825494-C	0.01045	2E-11	(IGHG2)	1.953	NR unit increase	Illumina [1671387] (imputed)	N
1237	chr3	85497197	85497198	rs9828679	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs9828679-T	NR	4E-10		0.0094872	[0.0065-0.0125] unit decrease	Affymetrix [18485882] (imputed)	N
1237	chr3	85499034	85499035	rs993137	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.1		rs993137-C	0.383	5E-53		0.02	[0.018-0.022] unit increase	NR [NR] (imputed)	N
1237	chr3	85502844	85502845	rs13323436	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p12.1	CADM2	rs13323436-A	0.10	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1237	chr3	85505758	85505759	rs73140731	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p12.1	CADM2	rs73140731-A	0.02	4E-6		0.208	NR unit increase	Illumina [NR] (imputed)	N
1237	chr3	85509883	85509883	rs57401290	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3p12.1	CADM2	rs57401290-GGTGTGT	0.552065	8E-14		0.0304779	[0.022-0.038] unit increase	Affymetrix [641018] (imputed)	N
1237	chr3	85513114	85513115	rs6762267	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Smoking status (ever vs never smokers)	207,229 European ancestry ever smoker cases, 243,177 European ancestry never smoker controls	NA	3p12.1	NR	rs6762267-C	0.381262	3E-19		0.0094076	[0.0073-0.0115] unit increase	Affymetrix [7736308] (imputed)	N
1237	chr3	85513114	85513115	rs6762267	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	3p12.1	CADM2	rs6762267-C	0.38	7E-31		1.049	[1.041-1.058]	Affymetrix [7736308] (imputed)	N
1237	chr3	85513114	85513115	rs6762267	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Body mass index	772,825 individuals	NA	3p12.1	CADM2	rs6762267-?	NR	2E-15		0.02	[0.016-0.024] unit increase	Affymetrix [NR]	N
1237	chr3	85513114	85513115	rs6762267	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3p12.1	NR	rs6762267-A	0.61	7E-13		0.052	[0.038-0.066] unit decrease	Affymetrix [NR] (imputed)	N
1237	chr3	85513792	85513793	rs62250713	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use	435,563 European ancestry individuals	NA	3p12.1	CADM2	rs62250713-A	0.368	1E-9		6.049	[NR] z score increase	Affymetrix [14069427] (imputed)	N
1237	chr3	85513792	85513793	rs62250713	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p12.1	CADM2	rs62250713-A	0.375418	4E-17		8.411	unit decrease	NR [10847151] (imputed)	N
1237	chr3	85515775	85515776	rs62250714	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p12.1	CADM2	rs62250714-A	0.6008	3E-11		0.1309	[0.092-0.17] mmHg increase	Affymetrix [NR] (imputed)	N
1237	chr3	85516951	85516952	rs6800177	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3p12.1	NR	rs6800177-A	0.258966	5E-9		5.84	z score decrease	NR [~ 10847151] (imputed)	N
1237	chr3	85518579	85518580	rs2875907	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	3p12.1	CADM2	rs2875907-A	0.352	9E-17		0.071	[0.053-0.089] unit increase	Affymetrix, Illumina [11733371] (imputed)	N
1237	chr3	85524169	85524170	rs11127893	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	3p12.1	NR	rs11127893-T	0.6461	3E-17		0.01816653	[0.014-0.022] unit decrease	Affymetrix [10613246] (imputed)	N
1237	chr3	85524169	85524170	rs11127893	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3p12.1	NR	rs11127893-T	0.652	2E-18		0.01585235	[0.012-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1237	chr3	85525322	85525323	rs12637791	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs12637791-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1237	chr3	85531198	85531199	rs9841144	25199915	Broer L	2014-09-08	J Gerontol A Biol Sci Med Sci	GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy.	Longevity (90 years and older)	6,036 European ancestry cases, 3,757 European ancestry controls	NA	3p12.1	CADM2	rs9841144-?	0.21	9E-7		1.2345679	[1.14-1.35]	Affymetrix, Illumina [2500000] (imputed)	N
1237	chr3	85546181	85546185	rs139528938	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Sensation seeking	22,745 European ancestry individuals	NA	3p12.1	CADM2	rs139528938-?	0.4024	8E-9		0.053	[0.035-0.071] unit increase	Illumina [11434023] (imputed)	N
1237	chr3	85546181	85546181	rs201815280	32920024	Sanna M	2020-09-10	J Invest Dermatol	Looking for Sunshine: Genetic Predisposition to Sun-Seeking in 265,000 Individuals of European Ancestry.	Sun-seeking behavior	261,915 European ancestry individuals	NA	3p12.1	CADM2	rs201815280-A		9E-9				Affymetrix, Illumina [8385325] (imputed)	N
1237	chr3	85546797	85546798	rs10433500	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs10433500-A	0.6321	9E-84		0.03901553	[0.035-0.043] unit decrease	Illumina [9339358] (imputed)	N
1237	chr3	85546797	85546798	rs10433500	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p12.1	NR	rs10433500-?	NR	6E-8		0.12402	[0.079-0.169] unit decrease	Affymetrix [7794483] (imputed)	N
1237	chr3	85546797	85546798	rs10433500	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3p12.1	NR	rs10433500-?	NR	5E-7	(female)	0.12551	[0.077-0.174] unit decrease	Affymetrix [7794483] (imputed)	N
1237	chr3	85552786	85552787	rs4637303	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3p12.1		rs4637303-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1237	chr3	85552786	85552787	rs4637303	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3p12.1	NR	rs4637303-T	NR	2E-9		6.029	z score increase	Affymetrix [10847151] (imputed)	N
1237	chr3	85569025	85569026	rs62250759	29391395	Strawbridge RJ	2018-02-02	Transl Psychiatry	Genome-wide analysis of self-reported risk-taking behaviour and cross-disorder genetic correlations in the UK Biobank cohort.	Self-reported risk-taking behaviour	29,703 British ancestry cases, 86,552 British ancestry controls	35,210 British ancestry cases, 104,263 British ancestry controls	3p12.1	CADM2	rs62250759-G	NR	5E-12		0.064	[0.046-0.082] unit decrease	Affymetrix [8781003] (imputed)	N
1237	chr3	85569360	85569361	rs9841829	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	3p12.1	CADM2	rs9841829-T	0.7725	2E-17		0.0104	[0.008-0.0128] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1237	chr3	85569360	85569361	rs9841829	28937693	Clarke TK	2017-07-25	Mol Psychiatry	Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117).	Alcohol consumption	59,088 European ancestry females, 53,029 European ancestry males	NA	3p12.1	CADM2	rs9841829-G	0.23	3E-10		0.019	[0.013-0.025] unit increase	Affymetrix [12489781] (imputed)	N
1237	chr3	85580587	85580588	rs17516256	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3p12.1	CADM2	rs17516256-A	0.6269	1E-20		0.021747468	[0.017-0.026] unit decrease	Affymetrix [11514463] (imputed)	N
1237	chr3	85585551	85585552	rs66632973	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3p12.1	CADM2	rs66632973-A		5E-11		1.028	[NR]	Affymetrix [up to 79000000] (imputed)	N
1237	chr3	85588204	85588205	rs35438712	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking initiation	324,851 European ancestry individuals, 21,962 South Asian ancestry individuals	up to 275,596 European ancestry individuals	3p12.1	CADM2	rs35438712-T	0.25	2E-13		0.017	[0.011-0.023] unit increase (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
1238	chr3	85591466	85591467	rs1449403	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3p12.1	CADM2	rs1449403-A	0.1226	6E-13		1.0433117		Affymetrix [11880941] (imputed)	N
1238	chr3	85593583	85593584	rs6780346	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	3p12.1	CADM2	rs6780346-?	NR	4E-8		0.00463029	[-0.00031-0.00957] unit increase	Affymetrix [25921788] (imputed)	N
1238	chr3	85593583	85593584	rs6780346	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	3p12.1	CADM2	rs6780346-?	NR	4E-8		0.0138041	[0.0089-0.0187] unit increase	Affymetrix [25921788] (imputed)	N
1238	chr3	85593583	85593584	rs6780346	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Alcohol consumption (drinks per week)	up to 357,854 European ancestry individuals	NA	3p12.1	CADM2	rs6780346-T	0.621	1E-10		0.0168	[0.012-0.022] unit decrease	Illumina [~ 250000] (imputed)	N
1238	chr3	85594130	85594131	rs73132375	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs73132375-A	0.8743	1E-9		0.01787506	[0.012-0.024] unit increase	Illumina [9339358] (imputed)	N
1238	chr3	85594427	85594428	rs6807666	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs6807666-A	NR	1E-19		0.02257	[0.018-0.027] unit decrease	Affymetrix [10847151] (imputed)	N
1238	chr3	85599919	85599920	rs6783138	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs6783138-C	0.377	1E-90		0.0246	[0.022-0.027] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1238	chr3	85603642	85603643	rs7652808	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3p12.1		rs7652808-?	NR	1E-23		0.0212858	[0.017-0.025] unit increase	NR [6912294] (imputed)	N
1238	chr3	85603642	85603643	rs7652808	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs7652808-T	NR	2E-13		0.011235	[0.0083-0.0142] unit increase	Affymetrix [18485882] (imputed)	N
1238	chr3	85604922	85604923	rs17518584	25869804	Ibrahim-Verbaas CA	2015-04-14	Mol Psychiatry	GWAS for executive function and processing speed suggests involvement of the CADM2 gene.	Information processing speed	Up to 30,807 European ancestry individuals, up to 1,267 Erasmus Rucphen (founder/genetic isolated) individuals, up to 535 Korculan (founder/genetic isolated) individuals, up to 417 Orcadian (founder/genetic isolated) individuals, up to 311 Vis (founder/genetic isolated) individuals	Up to 8,436 European ancestry individuals, up to 1,444 African American individuals	3p12.1	CADM2	rs17518584-T	0.64	3E-9	(LDST/DSST- age, sex, and education adjusted)	5.92	[NR] unit increase	Affymetrix, Illumina [up to 2357391] (imputed)	N
1238	chr3	85604922	85604923	rs17518584	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3p12.1	CADM2	rs17518584-?	NR	1E-6		0.0282	[0.017-0.040] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1238	chr3	85610907	85610908	rs9864170	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	CADM2	rs9864170-A	NR	3E-8		5.563	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1238	chr3	85616008	85616009	rs62250491	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3p12.1	NR	rs62250491-G	0.3713	2E-15		1.042	[1.03-1.05]	NR [8968716] (imputed)	N
1238	chr3	85617377	85617378	rs542809491	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3p12.1	CADM2	rs542809491-A	0.39	4E-23		0.053	[0.043-0.063] unit increase	Affymetrix [NR] (imputed)	N
1238	chr3	85619078	85619079	rs1449386	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3p12.1	CADM2	rs1449386-T	0.3968	4E-14		0.2088	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
1238	chr3	85624188	85624189	rs6790699	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	CADM2	rs6790699-A	0.373	6E-27		0.0286348	[0.023-0.034] unit increase	Affymetrix [~ 11515000] (imputed)	N
1238	chr3	85630550	85630551	rs1551042	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3p12.1	NR	rs1551042-A	0.357305	3E-16		8.194	unit decrease	NR [10847151] (imputed)	N
1238	chr3	85631141	85631142	rs1972994	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	3p12.1	NR	rs1972994-T	0.64702	8E-18		0.017509	[0.014-0.021] unit decrease	Affymetrix [16668957] (imputed)	N
1238	chr3	85632125	85632126	rs6549043	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3p12.1	CADM2	rs6549043-?		4E-18				Affymetrix, Illumina [NR] (imputed)	N
1238	chr3	85633020	85633021	rs35344466	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	3p12.1	NR	rs35344466-A	0.221978	2E-10		6.37	z score increase	NR [10847151] (imputed)	N
1238	chr3	85639671	85639672	rs6782190	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	3p12.1		rs6782190-G	0.352488	2E-20		0.019	[0.015-0.023] unit increase	NR [7250403] (imputed)	N
1238	chr3	85644481	85644482	rs55753638	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3p12.1		rs55753638-T	0.8786	3E-11		0.022	[0.016-0.028] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1238	chr3	85648648	85648649	rs4856278	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs4856278-A	NR	4E-10		0.0094504	[0.0065-0.0124] unit increase	Affymetrix [18485882] (imputed)	N
1238	chr3	85648648	85648649	rs4856278	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs4856278-A	NR	1E-10		0.01835	[0.013-0.024] unit decrease	Affymetrix [10847151] (imputed)	N
1238	chr3	85650340	85650341	rs112523595	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p12.1	CADM2	rs112523595-T	0.371681	1E-28		0.0239595	[0.02-0.028] unit decrease	NR [16516521] (imputed)	N
1238	chr3	85651135	85651136	rs34495106	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p12.1	CADM2	rs34495106-A	0.3722	2E-20		0.020761883	[0.016-0.025] unit increase	Affymetrix [11514654] (imputed)	N
1238	chr3	85651135	85651136	rs34495106	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p12.1		rs34495106-?	NR	7E-19				NR [~ 8900000] (imputed)	N
1238	chr3	85653010	85653011	rs73141536	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	3p12.1	CADM2	rs73141536-?		5E-6		1.26	[1.13-1.39]	Illumina [5352724] (imputed)	N
1238	chr3	85656568	85656569	rs6797840	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p12.1	NR	rs6797840-?		2E-13		0.0161032	[0.012-0.02] unit decrease	Affymetrix [19400418] (imputed)	N
1238	chr3	85657124	85657125	rs73141547	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3p12.1	Intergenic	rs73141547-A	0.6531	1E-16		0.0197	[0.015-0.024] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1238	chr3	85658229	85658230	rs1375561	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p12.1	Intergenic	rs1375561-T	0.6538	2E-15	(MTAG)	0.0191	[0.014-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr3	85668495	85668496	rs10212294	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.1	VGLL3	rs10212294-?	NR	2E-6	(indole-3-propionate)	0.246579	[0.14-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1238	chr3	85671675	85671676	rs55686445	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	3p12.1	CADM2	rs55686445-?	NR	5E-12		0.0307938	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1238	chr3	85672017	85672018	rs66568921	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p12.1	NR	rs66568921-T	0.365805	5E-10		0.045365095	[0.031-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1238	chr3	85672017	85672018	rs66568921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.1	Intergenic	rs66568921-T	0.6442	1E-30	(MTAG)	0.0199	[0.017-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr3	85672017	85672018	rs66568921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.1		rs66568921-T	0.6441	8E-34		0.0181	[0.015-0.021] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1238	chr3	85672017	85672018	rs66568921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.1	Intergenic	rs66568921-T	0.6441	6E-39	(MTAG)	0.0181	[0.015-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr3	85674789	85674790	rs62263923	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3p12.1		rs62263923-A	0.6437	3E-8		41.11693	z score increase	NR [6814003]	N
1238	chr3	85674789	85674790	rs62263923	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p12.1	CADM2	rs62263923-G	0.3493	4E-8		0.011658943	[0.0075-0.0158] unit increase	Affymetrix [up to 18485882] (imputed)	N
1238	chr3	85674789	85674790	rs62263923	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3p12.1	CADM2	rs62263923-?	NR	9E-11		0.013731798	[0.0096-0.0179] unit decrease	NR [7306098]	N
1238	chr3	85674789	85674790	rs62263923	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.1	NR	rs62263923-G	0.357	9E-29		0.0125484	[0.01-0.015] unit decrease	NR [9732723] (imputed)	N
1238	chr3	85674789	85674790	rs62263923	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p12.1	NR	rs62263923-A	0.639	1E-13		0.017226076	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1238	chr3	85677792	85677793	rs5023755	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p12.1		rs5023755-G	NR	3E-17		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1238	chr3	85677792	85677793	rs5023755	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p12.1	Intergenic	rs5023755-A	0.6562	6E-9		0.012	[0.0079-0.0161] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1238	chr3	85682086	85682087	rs12493563	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p12.1		rs12493563-T	NR	9E-20		0.0184	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1238	chr3	85682086	85682087	rs12493563	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (age at first cigarette)	up to 146,117 European ancestry control	NA	3p12.1	CADM2	rs12493563-T	0.341	6E-11		0.0277	[0.019-0.036] unit increase	Illumina [~ 250000] (imputed)	N
1238	chr3	85683599	85683600	rs9829032	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	3p12.1	CADM2	rs9829032-A	NR	3E-8		0.0084133	[0.0054-0.0114] unit decrease	Affymetrix [18485882] (imputed)	N
1238	chr3	85683599	85683600	rs9829032	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9829032-G	NR	9E-13		0.01751	[0.013-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1238	chr3	85693490	85693491	rs114216342	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3p12.1	NR	rs114216342-?	NR	4E-6		10667.331	NR unit decrease	Illumina [2379855]	N
1238	chr3	85698576	85698577	rs62261676	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p12.1	NR	rs62261676-A	NR	9E-11		0.022	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1238	chr3	85699039	85699040	rs11915747	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p12.1	CADM2	rs11915747-C	0.647257	5E-14		0.010795	[0.008-0.0136] unit increase	Affymetrix [12370749]	N
1238	chr3	85699039	85699040	rs11915747	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3p12.1	NR	rs11915747-G	0.354	6E-22		0.0147128	[0.012-0.018] unit increase	NR [9732723] (imputed)	N
1238	chr3	85699039	85699040	rs11915747	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	3p12.1	NR	rs11915747-G	0.354	2E-15		0.02	[0.015-0.025] unit increase	NR [~ 10000000] (imputed)	N
1238	chr3	85699039	85699040	rs11915747	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3p12.1		rs11915747-?	NR	4E-17				NR [~ 8900000] (imputed)	N
1238	chr3	85699039	85699040	rs11915747	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p12.1	Intergenic	rs11915747-C	0.6481	2E-14	(MTAG)	0.0144	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1238	chr3	85716559	85716560	rs78532577	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3p12.1	CADM2	rs78532577-?		4E-6				Illumina [4322238] (imputed)	N
1239	chr3	85733204	85733205	rs6549048	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3p12.1	CADM2	rs6549048-A	0.292485	2E-9		5.98	z score increase	NR [~ 10847151] (imputed)	N
1239	chr3	85759557	85759558	rs7611991	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Suffering from nerves	369,499 European ancestry individuals	NA	3p12.1	NR	rs7611991-A	0.248899	3E-9		5.93	z score decrease	NR [10847151] (imputed)	N
1239	chr3	85759557	85759558	rs7611991	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p12.1	NR	rs7611991-A	0.248899	4E-11		6.59	z score decrease	NR [10847151] (imputed)	N
1239	chr3	85780453	85780454	rs1448602	30150663	Pasman JA	2018-08-27	Nat Neurosci	GWAS of lifetime cannabis use reveals new risk loci, genetic overlap with psychiatric traits, and a causal influence of schizophrenia.	Cannabis use	184,765 European ancestry individuals	NA	3p12.1	CADM2	rs1448602-A	0.7557	7E-11		0.0618	[0.043-0.08] unit decrease	Affymetrix, Illumina [11733371] (imputed)	N
1239	chr3	85787398	85787399	rs9858244	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	3p12.1		rs9858244-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1239	chr3	85791656	85791657	rs957501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3p12.1		rs957501-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1239	chr3	85792136	85792137	rs7355953	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p12.1	CADM2	rs7355953-T	0.784962	7E-19		0.015159	[0.012-0.019] unit decrease	Affymetrix [12370749]	N
1239	chr3	85792136	85792137	rs7355953	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs7355953-C	NR	2E-12		0.02062	[0.015-0.026] unit decrease	Affymetrix [10847151] (imputed)	N
1239	chr3	85793375	85793376	rs7624230	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs7624230-C	0.112	8E-16		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1239	chr3	85800076	85800077	rs10511071	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3p12.1	CADM2	rs10511071-T	NR	1E-8		0.02678592	[0.018-0.036] unit decrease	Affymetrix [NR]	N
1239	chr3	85800362	85800363	rs17023276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs17023276-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1239	chr3	85806312	85806313	rs9876664	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs9876664-?	NR	1E-19				Affymetrix [~ 8270000] (imputed)	N
1239	chr3	85806312	85806313	rs9876664	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.1		rs9876664-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3p12.1	NR	rs13078960-T	NR	4E-17		0.027	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	CADM2	rs13078960-T	0.8065	3E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	CADM2	rs13078960-T	0.8065	3E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p12.1	CADM2	rs13078960-T	0.8065	1E-6		0.0227	[0.013-0.032] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	CADM2	rs13078960-T	0.8065	7E-8	(women)	0.0293	[0.019-0.04] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p12.1	CADM2	rs13078960-T	0.8065	1E-10		0.0261	[0.018-0.034] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	3p12.1	CADM2	rs13078960-G	NR	4E-6	(additive model)	0.024	[0.014-0.034] unit increase	NR [9288881] (imputed)	N
1239	chr3	85807589	85807590	rs13078960	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.1	CADM2	rs13078960-G	0.197	1E-11	(EA, women)	0.034	[0.024-0.043] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1239	chr3	85807589	85807590	rs13078960	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.1	CADM2	rs13078960-G	0.196	2E-14	(EA)	0.03	[0.022-0.037] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1239	chr3	85807589	85807590	rs13078960	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.1	CADM2	rs13078960-G	0.194	4E-7	(EA, men)	0.026	[0.016-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1239	chr3	85807589	85807590	rs13078960	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3p12.1	CADM2	rs13078960-G	0.193	1E-14		0.029	[0.022-0.036] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1239	chr3	85809424	85809425	rs13068138	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3p12.1	NR	rs13068138-T	0.197352598573571	1E-16		0.027749745	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1239	chr3	85819411	85819412	rs2325036	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.1	CADM2	rs2325036-A	0.6036	9E-6	(EA, men)	0.0212	[0.012-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1239	chr3	85819411	85819412	rs2325036	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.1	CADM2	rs2325036-A	0.6036	6E-8	(EA, women)	0.0242	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1239	chr3	85819411	85819412	rs2325036	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.1	CADM2	rs2325036-A	0.6036	2E-11	(EA)	0.0232	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1239	chr3	85820180	85820181	rs13098327	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3p12.1	NA	rs13098327-A	0.1918	4E-29		0.0229	[0.019-0.027] unit increase	NR [~ 27400000] (imputed)	N
1239	chr3	85820180	85820181	rs13098327	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.1	CADM2	rs13098327-A	0.1955	1E-9	(EA)	0.0268	[0.018-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1239	chr3	85820180	85820181	rs13098327	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3p12.1	CADM2	rs13098327-A	0.1955	1E-7	(EA,women)	0.0305	[0.019-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1239	chr3	85826380	85826381	rs9813495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p12.1	CADM2	rs9813495-A	0.8113	2E-8		0.0476	[0.031-0.064] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1239	chr3	85826380	85826381	rs9813495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p12.1	CADM2	rs9813495-A	0.8115	1E-6		0.0463	[0.027-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1239	chr3	85826380	85826381	rs9813495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3p12.1	CADM2	rs9813495-A	0.8115	1E-6		0.0463	[0.027-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1239	chr3	85826380	85826381	rs9813495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3p12.1	CADM2	rs9813495-A	0.8151	5E-7		0.0611	[0.037-0.085] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1239	chr3	85826380	85826381	rs9813495	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3p12.1	CADM2	rs9813495-A	0.8114	5E-9		0.05	[0.033-0.067] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1239	chr3	85826735	85826736	rs9852127	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p12.1	CADM2	rs9852127-A	0.1865	1E-7	(EA)	0.0295	[0.019-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85826735	85826736	rs9852127	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852127-?	NR	7E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85826735	85826736	rs9852127	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852127-?	NR	2E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85826735	85826736	rs9852127	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852127-A	0.1865	8E-7	(EA, women)	0.0316	[0.019-0.044] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85826735	85826736	rs9852127	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852127-A	0.1865	2E-9	(EA)	0.0297	[0.02-0.039] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85842340	85842341	rs9852859	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852859-C	0.19130000000000003	5E-6	(women)	0.0267	[0.015-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85842340	85842341	rs9852859	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9852859-C	0.19130000000000003	2E-9		0.0272	[0.018-0.036] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1239	chr3	85849850	85849851	rs1988552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs1988552-A	0.087	2E-15		0.0166	[0.012-0.021] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1239	chr3	85849850	85849851	rs1988552	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	CADM2	rs1988552-A	0.0934	4E-12		0.0230817	[0.017-0.03] unit increase	Illumina [9339358] (imputed)	N
1240	chr3	85861063	85861064	rs9818122	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs9818122-?	NR	3E-19				Affymetrix [~ 8270000] (imputed)	N
1240	chr3	85861063	85861064	rs9818122	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3p12.1	NA	rs9818122-T	0.7933	4E-30		0.0228	[0.019-0.027] unit decrease	NR [~ 27400000] (imputed)	N
1240	chr3	85861063	85861064	rs9818122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3p12.1	CADM2	rs9818122-C	0.20320000000000005	9E-8		0.0268	[0.017-0.037] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1240	chr3	85861063	85861064	rs9818122	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3p12.1	CADM2	rs9818122-?	NR	5E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1240	chr3	85868528	85868529	rs10865612	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	CADM2	rs10865612-T	0.6449	3E-8		0.014908903	[0.0096-0.0202] unit increase	Affymetrix [~ 11515000] (imputed)	N
1240	chr3	85871106	85871107	rs9968137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p12.1	Intergenic	rs9968137-T	0.8651	7E-9	(MTAG)	0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1240	chr3	85874475	85874476	rs12494658	22832960	Service SK	2012-05-15	Transl Psychiatry	A genome-wide meta-analysis of association studies of Cloninger's Temperament Scales.	Temperament	Up to 12,433 European ancestry individuals	NA	3p12.1	CADM2	rs12494658-T	0.752	5E-6	(Persistence)	0.078	unit decrease	Affymetrix, Illumina [1252222] (imputed)	N
1240	chr3	85884149	85884150	rs13078807	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3p12.1		rs13078807-A	0.7998	2E-11		0.18608785	[0.13-0.24] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1240	chr3	85884149	85884150	rs13078807	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	3p12.1	CADM2	rs13078807-G	0.2	3E-11	(Overweight)	1.06	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1240	chr3	85884149	85884150	rs13078807	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	3p12.1	CADM2	rs13078807-G	0.20	4E-11		0.1	[0.06-0.14] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
1240	chr3	85886076	85886077	rs12495178	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p12.1	NA	rs12495178-T	0.6416	1E-12		0.0124	[0.0089-0.0159] unit increase	NR [~ 27400000] (imputed)	N
1240	chr3	85886076	85886077	rs12495178	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p12.1	NA	rs12495178-T	0.6414	2E-28		0.0185	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
1240	chr3	85886076	85886077	rs12495178	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3p12.1	CADM2	rs12495178-C	0.37	3E-9		0.014	[0.01-0.018] unit decrease	Illumina [6108953] (imputed)	N
1240	chr3	85893046	85893047	rs9828595	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3p12.1	NR	rs9828595-G	NR	3E-11		0.01936	[0.014-0.025] unit decrease	Affymetrix [10847151] (imputed)	N
1240	chr3	85893047	85893048	rs4473564	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3p12.1	CADM2	rs4473564-A	0.214509	4E-9		5.87	z score decrease	NR [10847151] (imputed)	N
1240	chr3	85896589	85896590	rs74433724	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3p12.1	CADM2	rs74433724-A	0.9377252	3E-6		0.398055	[0.23-0.57] unit increase	Illumina [6952813] (imputed)	N
1240	chr3	85898625	85898626	rs62261725	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p12.1	NR	rs62261725-G	0.3265	6E-16		0.021447962	[0.016-0.027] unit decrease	Affymetrix [10549349] (imputed)	N
1240	chr3	85902535	85902536	rs57153235	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3p12.1	NR	rs57153235-G	0.318	2E-12	(Conditioned on chr3:85475292, chr3:85460131)	0.01937996	[0.014-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1240	chr3	85905033	85905034	rs71316816	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	3p12.1	CADM2	rs71316816-C	0.92	9E-6		1.25	[1.14-1.37]	NR [NR]	N
1240	chr3	85906927	85906928	rs3911063	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p12.1		rs3911063-T	0.68	1E-8				NR [NR] (imputed)	N
1240	chr3	85906927	85906928	rs3911063	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p12.1		rs3911063-T	0.68	2E-14		0.012	% increase	NR [NR] (imputed)	N
1240	chr3	85906927	85906928	rs3911063	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3p12.1	CADM2	rs3911063-C	0.3202	5E-9		0.012653828	[0.0084-0.0169] unit increase	Affymetrix [up to 18485882] (imputed)	N
1240	chr3	85906927	85906928	rs3911063	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p12.1	CADM2	rs3911063-T	0.6738	5E-19		0.019096201	[0.015-0.023] unit increase	Affymetrix [11514654] (imputed)	N
1240	chr3	85907580	85907581	rs4856605	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p12.1		rs4856605-G	0.691	2E-30		0.014	[0.012-0.016] unit increase	NR [NR] (imputed)	N
1240	chr3	85927574	85927575	rs11719438	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p12.1	NR	rs11719438-C	0.173	1E-10		0.00925391	[0.0064-0.0121] unit increase	NR [9732723] (imputed)	N
1240	chr3	85941810	85941811	rs111246959	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3p12.1	NR	rs111246959-G	0.104374	3E-8		0.057074662	[0.037-0.077] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1240	chr3	85941810	85941811	rs111246959	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3p12.1	Intergenic	rs111246959-A	0.0951	2E-8		0.0272	[0.018-0.037] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1240	chr3	85946505	85946506	rs112374913	27046643	Davies G	2016-04-05	Mol Psychiatry	Genome-wide association study of cognitive functions and educational attainment in UK Biobank (N=112 151).	Educational attainment	111,114 European ancestry individuals	NA	3p12.1	CADM2	rs112374913-?	NR	3E-9		0.0257989	[NR] unit increase	Affymetrix [~ 17300000] (imputed)	N
1240	chr3	85958953	85958954	rs62261746	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3p12.1	CADM2	rs62261746-C	0.6917	3E-8		0.0576	[0.037-0.078] unit decrease	NR [9744772] (imputed)	N
1240	chr3	85958953	85958954	rs62261746	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	CADM2	rs62261746-C	0.702	1E-20		0.0121	[0.0096-0.0146] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1240	chr3	85962690	85962691	rs146282319	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	NR	rs146282319-?	NR	7E-7		4.949	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1240	chr3	85981080	85981081	rs9866543	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p12.1		rs9866543-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1241	chr3	85996561	85996562	rs7631735	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3p12.1		rs7631735-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1242	chr3	86145280	86145281	rs113919848	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	VGLL3	rs113919848-A	0.0626	2E-8		0.029819146	[0.019-0.04] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1242	chr3	86149108	86149109	rs73138150	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3p12.1	CADM2	rs73138150-T	0.324	4E-10		0.0152	[0.01-0.02] unit decrease	Illumina [~ 250000] (imputed)	N
1242	chr3	86158884	86158885	rs2324999	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3p12.1	VGLL3	rs2324999-T	0.2001	2E-9		0.0150866	[0.01-0.02] unit increase	Affymetrix [11514654] (imputed)	N
1242	chr3	86158884	86158885	rs2324999	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p12.1	CADM2	rs2324999-T	0.20	4E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1242	chr3	86158884	86158885	rs2324999	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3p12.1	CADM2	rs2324999-T	0.20	2E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1242	chr3	86171852	86171853	rs7651114	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs7651114-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1242	chr3	86173622	86173623	rs57437407	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.1		rs57437407-A	0.89	3E-10		0.0145	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1242	chr3	86181166	86181167	rs12491181	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3p12.1	Intergenic	rs12491181-T	0.4446	1E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1242	chr3	86183715	86183716	rs56262138	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3p12.1	NR	rs56262138-A	0.2983	2E-8		0.013925424	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1242	chr3	86189860	86189861	rs12494510	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3p12.1	VGLL3	rs12494510-T	0.6984	4E-11		0.01854883	[0.013-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1242	chr3	86190432	86190433	rs6763449	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3p12.1	VGLL3	rs6763449-C	0.8575	4E-9		0.019850375	[0.013-0.026] unit decrease	Affymetrix [11515109] (imputed)	N
1242	chr3	86196636	86196637	rs28628150	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	3p12.1	snoZ40	rs28628150-A	0.865	5E-6		0.0777	[0.044-0.111] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1242	chr3	86203808	86203809	rs9833726	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p12.1	NR	rs9833726-T	0.1358	6E-6	(EA)	0.0429	[0.024-0.062] unit decrease	Illumina [~ 11800000] (imputed)	N
1242	chr3	86203820	86203821	rs6790538	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	VGLL3	rs6790538-C	0.5503	1E-12		0.013833275	[0.01-0.018] unit decrease	Illumina [9339358] (imputed)	N
1242	chr3	86209080	86209081	rs7430852	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	3p12.1	NR	rs7430852-?	NR	3E-6		0.1014	[0.059-0.144] unit increase	Illumina [at least 560000] (imputed)	N
1243	chr3	86250044	86250045	rs9856337	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	VGLL3	rs9856337-A	0.273	7E-9		0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1243	chr3	86250423	86250424	rs35384579	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p12.1	NR	rs35384579-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1243	chr3	86250423	86250424	rs35384579	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3p12.1	VGLL3	rs35384579-C	0.6218	1E-9		0.014764999	[0.01-0.0195] unit decrease	Affymetrix [11515109] (imputed)	N
1243	chr3	86255671	86255672	rs7428796	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3p12.1	intergenic	rs7428796-?	.617	2E-18			[NR]	Affymetrix, Illumina [152234]	N
1243	chr3	86261799	86261800	rs4396896	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3p12.1	NR	rs4396896-A	0.39662	1E-10		0.046204437	[0.032-0.06] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1243	chr3	86261799	86261800	rs4396896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3p12.1		rs4396896-A	0.3916	1E-13		0.0107	[0.008-0.0134] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1243	chr3	86261799	86261800	rs4396896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3p12.1	Intergenic	rs4396896-A	0.3916	4E-13	(MTAG)	0.0097	[0.0072-0.0122] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1243	chr3	86304131	86304132	rs13085160	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3p12.1	VGLL3	rs13085160-?	NR	6E-7	(PC 36:5)	0.17981498	[0.11-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1243	chr3	86370172	86370173	rs139162753	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	VGLL3	rs139162753-T	0.9964	2E-10		0.1036072	[0.072-0.135] unit decrease	Illumina [9339358] (imputed)	N
1244	chr3	86497393	86497394	rs114456288	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in swollen 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	3p12.1	CADM2, VGLL3	rs114456288-?		5E-8	(Infliximab)	1.1	[0.71-1.49] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
1244	chr3	86503734	86503735	rs291958	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of fructose	1,757 European ancestry twins	NA	3p12.1	RP11-331K15.1	rs291958-A	0.05	9E-6		0.36	[0.2-0.52] unit increase	Illumina [4381914] (imputed)	N
1245	chr3	86544385	86544386	rs188655146	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3p12.1	NR	rs188655146-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
1246	chr3	86670463	86670464	rs4605551	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3p12.1	VGLL3	rs4605551-T	0.639	1E-16		0.0102	[0.0078-0.0126] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1246	chr3	86670463	86670464	rs4605551	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3p12.1	VGLL3	rs4605551-T	0.6366	3E-15		0.01588298	[0.012-0.02] unit decrease	Illumina [9339358] (imputed)	N
1246	chr3	86671514	86671515	rs6797231	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p12.1	LINC02070	rs6797231-G	0.687965	2E-13		0.0163398	[0.012-0.021] unit increase	NR [16516521] (imputed)	N
1246	chr3	86756870	86756871	rs6549112	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p12.1	NR	rs6549112-G	0.3328	2E-11		0.0268	[0.019-0.035] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1246	chr3	86762236	86762237	rs75481562	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	3p12.1	Intergenic	rs75481562-T	0.0283	9E-6		1.4454	[0.81-2.08] unit increase	Illumina [9520174] (imputed)	N
1246	chr3	86763101	86763106	rs3072056	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 2)	4,680 European ancestry individuals	3,566 European ancestry individuals	3p12.1		rs3072056-C	0.351175214	4E-11				Illumina [7417619] (imputed)	N
1247	chr3	86782581	86782582	rs11919691	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3p12.1	NR	rs11919691-A	0.620351	3E-10		0.0132684	[0.0092-0.0173] unit increase	Affymetrix [16583148] (imputed)	N
1247	chr3	86800084	86800085	rs4530527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3p12.1	NR	rs4530527-C	0.361086	2E-9		0.0079481	[0.0054-0.0105] unit increase	Affymetrix [16585854] (imputed)	N
1247	chr3	86800084	86800085	rs4530527	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3p12.1	NR	rs4530527-C	0.361086	4E-7		0.0077995	[0.0049-0.0107] unit increase	Affymetrix [16585866] (imputed)	N
1247	chr3	86831076	86831077	rs1437055	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p12.1	NR	rs1437055-C	0.3872	1E-8		0.0267	[0.017-0.036] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1247	chr3	86850617	86850618	rs7628864	23449627	Cousminer DL	2013-02-27	Hum Mol Genet	Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.	Pubertal anthropometrics	up to 5,043 European ancestry males, up to 5,756 European ancestry females	NA	3p12.1	VGLL3	rs7628864-G	0.38	3E-9	(Pubertal growth, females)	0.11	[0.073-0.147] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1247	chr3	86890845	86890846	rs12714668	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3p12.1	NR	rs12714668-C	0.6896	8E-6		0.0433	[0.024-0.062] unit decrease	Illumina [up to 1980188] (imputed)	N
1247	chr3	86892363	86892364	rs9681954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p12.1		rs9681954-?	NR	8E-25				NR [~ 8900000] (imputed)	N
1248	chr3	86916881	86916882	rs7642134	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3p12.1	POU1F1, PIT1	rs7642134-G	0.61	3E-16		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1248	chr3	86916881	86916882	rs7642134	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3p12.1	VGLL3	rs7642134-A	0.38	4E-10		2.4	[1.62-3.18] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1248	chr3	86934117	86934118	rs188428306	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p12.1	NR	rs188428306-?	NR	6E-7		4.996	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1248	chr3	86944937	86944938	rs13068899	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	3p12.1	CADM2, VGLL3	rs13068899-?	NR	1E-8		0.027	[0.018-0.036] unit increase	Illumina [12039492]	N
1248	chr3	86964321	86964322	rs13082048	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3p12.1	NR	rs13082048-A	0.360708	3E-10		0.00575917	[0.004-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
1248	chr3	86964321	86964322	rs13082048	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3p12.1	NR	rs13082048-A	0.360708	1E-8		0.00590015	[0.004-0.0078] unit increase	Affymetrix [16582965] (imputed)	N
1248	chr3	86968508	86968509	rs17023661	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3p12.1	VGLL3	rs17023661-A	0.221	2E-6	(IL6 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1248	chr3	86977274	86977275	rs13092422	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3p12.1	VGLL3	rs13092422-C	NR	3E-12		0.0212513	[0.015-0.027] unit increase	Affymetrix [321788] (imputed)	N
1248	chr3	86983961	86983962	rs12496631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3p12.1		rs12496631-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1249	chr3	87037542	87037543	rs13066793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3p12.1		rs13066793-G	NR	2E-8		0.0229	[0.015-0.031] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1249	chr3	87037542	87037543	rs13066793	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3p12.1	NR	rs13066793-G	NR	4E-9		0.0246	[0.016-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1249	chr3	87037542	87037543	rs13066793	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3p12.1	VGLL3	rs13066793-A	0.909903	1E-10		0.0224735	[0.016-0.029] unit increase	Affymetrix [NR] (imputed)	N
1249	chr3	87037542	87037543	rs13066793	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3p12.1	VGLL3	rs13066793-A	0.909883	3E-11		0.0220822	[0.016-0.029] unit decrease	Affymetrix [NR] (imputed)	N
1249	chr3	87037542	87037543	rs13066793	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3p12.1	VGLL3	rs13066793-A	0.91	1E-9	(EA)	1.0638298	[1.03-1.1] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1249	chr3	87110673	87110674	rs2660753	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3p12.1	NR	rs2660753-T	NR	5E-7		1.12	NR	Affymetrix [at least 232408] (imputed)	N
1249	chr3	87110673	87110674	rs2660753	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	3p12.1	VGLL3	rs2660753-T	0.259	1E-9		1.1778563	NR	Illumina [7742602] (imputed)	N
1249	chr3	87110673	87110674	rs2660753	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3p12.1	NR	rs2660753-T	0.1	6E-21		1.13	[1.10-1.16]	Illumina [20370935] (imputed)	N
1249	chr3	87110673	87110674	rs2660753	26443449	Wang M	2015-10-07	Nat Commun	Large-scale association analysis in Asians identifies new susceptibility loci for prostate cancer.	Prostate cancer	3,000 East Asian ancestry cases, 4,394 East Asian ancestry controls	3,605 East Asian ancestry cases, 3,919 East Asian ancestry controls	3p12.1	VGLL3	rs2660753-T	NR	6E-6		1.1904762	[NR]	Illumina [4550396] (imputed)	N
1249	chr3	87110673	87110674	rs2660753	18264097	Eeles RA	2008-02-10	Nat Genet	Multiple newly identified loci associated with prostate cancer susceptibility.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	3,268 European ancestry cases, 3,366 European ancestry controls	3p12.1	intergenic	rs2660753-T	0.11	3E-8		1.18	[1.06-1.31]	Illumina [541129]	N
1249	chr3	87134799	87134800	rs17023900	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	3p12.1	LINC00506, BC050344	rs17023900-G	0.07	1E-11		1.26	[1.18-1.34]	Illumina [1531807] (imputed)	N
1249	chr3	87134799	87134800	rs17023900	22923026	Cheng I	2012-08-24	Cancer Epidemiol Biomarkers Prev	Evaluating genetic risk for prostate cancer among Japanese and Latinos.	Prostate cancer	1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls	1,583 Japanese ancestry cases, 3,386 Japanese ancestry  controls, 1,854 European ancestry cases, 3,748 European ancestry controls	3p12.1	NR	rs17023900-G	NR	6E-8	(Japanese and Latin American)	1.41	NR	Illumina [528023]	N
1249	chr3	87144016	87144017	rs143745027	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p12.1	NR	rs143745027-G	NR	3E-38		1.169	[1.14-1.20]	Affymetrix, Illumina [29235255] (imputed)	N
1249	chr3	87144016	87144017	rs143745027	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	3p12.1	NR	rs143745027-G	0.131	3E-13		1.196	[1.14-1.26]	Affymetrix, Illumina [10186136] (imputed)	N
1249	chr3	87144039	87144040	rs370595232	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	3p12.1		rs370595232-C	0.151328929	2E-15		1.2559179	[1.187165162-1.328652302]	Illumina [8919992] (imputed)	N
1249	chr3	87152168	87152169	rs9284813	20676098	Takata R	2010-08-01	Nat Genet	Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.	Prostate cancer	1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls	3,001 Japanese ancestry cases, 5,415 Japanese ancestry controls	3p11.2	intergenic	rs9284813-?	NR	5E-9				Illumina [510687]	N
1249	chr3	87152680	87152681	rs9310048	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3p11.2		rs9310048-C	0.221135453	2E-15		0.19815528	[0.15-0.25] unit increase	Illumina [13406905] (imputed)	N
1250	chr3	87173323	87173324	rs17181170	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3p11.2		rs17181170-?	NR	1E-8		0.906564	[0.87-0.94]	NR [680312]	N
1250	chr3	87173323	87173324	rs17181170	19767753	Eeles RA	2009-09-20	Nat Genet	Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.	Prostate cancer	1,854 European ancestry cases, 1,894 European ancestry controls	19,879 cases and 18,761 controls of European, East Asian, African American, Latino, and Hawaiian ancestry	3p11.2	NR	rs17181170-?	NR	3E-8				Illumina [541129]	N
1250	chr3	87175983	87175984	rs7628934	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	3p11.2	NR	rs7628934-C	0.499565205	2E-6		1.0880475	[1.05-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
1250	chr3	87175983	87175984	rs7628934	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p11.2	NR	rs7628934-C	NR	2E-41		1.098	[1.08-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1250	chr3	87175983	87175984	rs7628934	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	3p11.2	NR	rs7628934-C	0.69	9E-7		1.103	[1.06-1.15]	Affymetrix, Illumina [10186136] (imputed)	N
1250	chr3	87192090	87192091	rs60086365	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3p11.2		rs60086365-A	NR	4E-25		0.1255	[0.1-0.15] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1250	chr3	87209148	87209149	rs6801665	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	3p11.2		rs6801665-T	NR	8E-14		1.1143	NR	Affymetrix [7846216] (imputed)	N
1250	chr3	87209148	87209149	rs6801665	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3p11.2		rs6801665-T	NR	2E-10		1.11	[1.075-1.147]	Affymetrix [7846216] (imputed)	N
1250	chr3	87241496	87241497	rs7629490	21743057	Schumacher FR	2011-07-08	Hum Mol Genet	Genome-wide association study identifies new prostate cancer susceptibility loci.	Prostate cancer	2,782 European ancestry cases, 4,458 European ancestry controls	7,358 European ancestry cases, 6,732 European ancestry controls	3p11.2	intergenic	rs7629490-T	NR	1E-7	(conditioned on rs2660753)	1.06	[1.04-1.09]	Illumina [571243]	N
1251	chr3	87313352	87313353	rs4988462	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	3p11.2	BC050344, POU1F1, MIR4795, CHMP2B	rs4988462-T	0.42	4E-7		1.18	[NR]	Illumina [7659573] (imputed)	N
1251	chr3	87315388	87315389	rs9823893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3p11.2		rs9823893-T	NR	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1251	chr3	87346734	87346735	rs34454426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p11.2		rs34454426-?	NR	4E-15				NR [~ 8900000] (imputed)	N
1251	chr3	87399361	87399362	rs114810266	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3p11.2	NR	rs114810266-A	NR	8E-11		1.165	[1.11-1.22]	Affymetrix, Illumina [29235255] (imputed)	N
1252	chr3	87467331	87467332	rs2055109	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	3p11.2	FOU1F1	rs2055109-C	0.107	9E-6		1.1947432	NR	Illumina [7742602] (imputed)	N
1252	chr3	87477885	87477886	rs150808852	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM9	5,349 Icelandic ancestry individuals	NA	3p11.2		rs150808852-A	0.01167	5E-20		0.766646	[0.6-0.93] unit decrease	Illumina [7506463] (imputed)	N
1252	chr3	87495549	87495550	rs9834692	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p11.2	intergenic	rs9834692-?	NR	3E-9	(Clustering coefficient - R-insula)			Illumina [428287]	N
1252	chr3	87495913	87495914	rs9835333	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	3p11.2	NR	rs9835333-?	NR	2E-6		1.9906	[1.17-2.81] unit increase	Illumina [at least 560000] (imputed)	N
1252	chr3	87525448	87525449	rs9883474	23471985	Jahanshad N	2013-03-05	Proc Natl Acad Sci U S A	Genome-wide scan of healthy human connectome discovers SPON1 gene variant influencing dementia severity.	Brain connectivity	331 European ancestry individuals		3p11.2	intergenic	rs9883474-?	NR	3E-9	(Clustering coefficient - R-insula)			Illumina [428287]	N
1252	chr3	87528099	87528100	rs112920706	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	3p11.2	APOOP2	rs112920706-C	NR	4E-7		0.02954	[0.018-0.041] unit increase	Illumina [NR] (imputed)	N
1254	chr3	87693858	87693859	rs182019417	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p11.2	Intergenic	rs182019417-G	1.0	2E-6	(AA)	4.972	NR unit increase	Illumina [NR] (imputed)	N
1254	chr3	87700890	87700891	rs544172318	27864402	Harris SE	2017-06-01	Int J Epidemiol	Molecular genetic contributions to self-rated health.	Self-rated health	111,749 British ancestry individuals	NA	3p11.2	Intergenic	rs544172318-?	NR	9E-9		0.23	[NR] unit decrease	Affymetrix [~ 17300000] (imputed)	N
1254	chr3	87751557	87751558	rs755291044	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Resting heart rate	19,920 British ancestry individuals from 6863 families.	NA	3p11.2	intergenic	rs755291044-A	0.0016536	2E-8		8.600103	[5.61-11.59] beats per minute increase	Illumina [24111857] (imputed)	N
1254	chr3	87752434	87752435	rs181585632	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p11.2	Intergenic	rs181585632-C	1.0	2E-6	(AA)	4.957	NR unit increase	Illumina [NR] (imputed)	N
1254	chr3	87783975	87783976	rs9860340	22554406	Kang SJ	2012-05-03	Genes Brain Behav	Family-based genome-wide association study of frontal ? oscillations identifies potassium channel gene KCNJ6.	Electroencephalographic traits in alcoholism	1,560 European ancestry individuals from 117 families	NA	3p11.2	intergenic	rs9860340-A	0.749	4E-6		0.122	[NR] unit decrease	Illumina [634583]	N
1255	chr3	87827196	87827197	rs185969863	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p11.2	Intergenic	rs185969863-A	0.999	2E-6	(AA)	1.808	NR unit increase	Illumina [NR] (imputed)	N
1255	chr3	87891214	87891215	rs182728150	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3p11.1	Intergenic	rs182728150-T	1.0	3E-6	(AA)	2.099	NR unit increase	Illumina [NR] (imputed)	N
1256	chr3	87995950	87995951	rs2915293	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3p11.1		rs2915293-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1256	chr3	88001712	88001713	rs17025198	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3p11.1	NR	rs17025198-A	0.2043	2E-8		1.042	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1256	chr3	88024985	88024986	rs56398417	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3p11.1	NR	rs56398417-?		6E-10		0.0144253	[0.0099-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1256	chr3	88024985	88024986	rs56398417	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p11.1	NR	rs56398417-T	0.3125	8E-10		0.01651318	[0.011-0.022] unit decrease	Affymetrix [10549349] (imputed)	N
1256	chr3	88024985	88024986	rs56398417	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3p11.1	NA	rs56398417-T	0.3041	1E-11		0.014	[0.0099-0.0181] unit decrease	NR [~ 27400000] (imputed)	N
1256	chr3	88051600	88051601	rs6804848	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3p11.1		rs6804848-C	0.338123	3E-11		0.015590188	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1256	chr3	88074095	88074096	rs55840331	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs55840331-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1257	chr3	88097699	88097702	rs55737161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p11.1		rs55737161-A	NR	5E-13		0.0226	[0.017-0.029] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1257	chr3	88097699	88097702	rs55737161	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3p11.1	CGGBP1	rs55737161-A	0.124934	6E-13		0.024540843	[0.018-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr3	88100209	88100210	rs114547690	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3p11.1	CGGBP1	rs114547690-A	NR	1E-8		0.011015	[0.0072-0.0148] unit increase	Affymetrix [10061374] (imputed)	N
1257	chr3	88105359	88105360	rs2735556	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3p11.1	CGGBP1	rs2735556-T	0.885665	5E-15		0.017187	[0.013-0.021] unit increase	Affymetrix [12370749]	N
1257	chr3	88105684	88105684	rs3841946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3p11.1		rs3841946-CA	NR	1E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1257	chr3	88105684	88105684	rs3841946	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3p11.1	NR	rs3841946-C	0.156753	9E-17		0.0333543	[0.025-0.042] unit increase	Affymetrix [16577313] (imputed)	N
1257	chr3	88123494	88123494	rs368382716	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	3p11.1	NR	rs368382716-CTT	NR	4E-9		0.0204	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1257	chr3	88130135	88130136	rs73146095	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3p11.1	NR	rs73146095-C	0.9016	8E-9		0.0406	[0.027-0.054] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1257	chr3	88132978	88132979	rs4378991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3p11.1	CGGBP1, RP11-159G9.5	rs4378991-G	0.833249	9E-22		0.0267351	[0.021-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr3	88132978	88132979	rs4378991	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3p11.1	CGGBP1, RP11-159G9.5	rs4378991-G	0.833218	4E-23		0.029250555	[0.023-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1257	chr3	88132978	88132979	rs4378991	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p11.1	NR	rs4378991-G	0.844787	2E-22				Affymetrix, Illumina [20825802] (imputed)	N
1257	chr3	88132978	88132979	rs4378991	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3p11.1	CGGBP1, RP11-159G9.5	rs4378991-G	0.8313	3E-10		0.02965346	[0.02-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1257	chr3	88165710	88165711	rs58223193	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3p11.1	NR	rs58223193-C	0.846559	5E-24		0.026241	[0.021-0.031] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1257	chr3	88179767	88179767	rs558725158	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3p11.1	NR	rs558725158-I	0.814573	3E-25		0.027118	[0.022-0.032] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1257	chr3	88179783	88179783	rs10674029	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3p11.1		rs10674029-ATTT	NR	2E-17		0.0264	[0.02-0.032] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1257	chr3	88182892	88182893	rs6767258	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3p11.1		rs6767258-G	0.153	4E-15		0.013	[0.0091-0.0169] unit decrease	NR [NR] (imputed)	N
1257	chr3	88196210	88196211	rs9861443	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3p11.1	CGGBP1	rs9861443-C	0.714634	3E-16		0.02009311	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1257	chr3	88196210	88196211	rs9861443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p11.1	NR	rs9861443-C	0.730262	5E-12				Affymetrix, Illumina [24332387] (imputed)	N
1257	chr3	88196210	88196211	rs9861443	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3p11.1	NR	rs9861443-C	0.714873	4E-14		0.015642	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1257	chr3	88196210	88196211	rs9861443	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3p11.1	NR	rs9861443-C	0.72	1E-9		0.00751109	[0.0051-0.0099] unit increase	NR [9732723] (imputed)	N
1257	chr3	88196210	88196211	rs9861443	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3p11.1		rs9861443-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1257	chr3	88204732	88204733	rs9815738	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (Multivariate)	1,390 European ancestry individuals	NA	3p11.1		rs9815738-?	NR	7E-7	(MLM)			Illumina [~ 9000000] (imputed)	N
1257	chr3	88206391	88206392	rs9826925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p11.1		rs9826925-T	NR	2E-9		0.0212	[0.014-0.028] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1258	chr3	88217876	88217876	rs11425772	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3p11.1	NR	rs11425772-C	0.229005	1E-8		0.0150199	[0.0098-0.0202] unit increase	Affymetrix [16583148] (imputed)	N
1258	chr3	88218786	88218787	rs7637431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3p11.1	NR	rs7637431-C	0.868561	4E-21				Affymetrix, Illumina [24246363] (imputed)	N
1258	chr3	88224303	88224304	rs4858934	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3p11.1	CGGBP1	rs4858934-T	0.1147	9E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix [15275733] (imputed)	N
1258	chr3	88237915	88237915	rs11447888	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3p11.1		rs11447888-AT	NR	1E-16		0.0269	[0.021-0.033] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1258	chr3	88241273	88241274	rs9849248	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3p11.1	ZNF654, HTR1P	rs9849248-C	0.15	2E-8		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1258	chr3	88249921	88249922	rs12714702	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3p11.1	C3orf38	rs12714702-A	0.159014	1E-17		0.0242193	[0.019-0.03] unit increase	NR [16516521] (imputed)	N
1258	chr3	88254819	88254820	rs4858940	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p11.1	C3orf38	rs4858940-T	0.114454	6E-10		0.013312	[0.0091-0.0175] unit decrease	Affymetrix [12370749]	N
1258	chr3	88254819	88254820	rs4858940	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs4858940-?	NR	1E-15				Affymetrix [~ 8270000] (imputed)	N
1258	chr3	88254819	88254820	rs4858940	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p11.1		rs4858940-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1258	chr3	88268380	88268381	rs9856990	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3p11.1		rs9856990-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1258	chr3	88270626	88270627	rs28672845	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3p11.1		rs28672845-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1258	chr3	88287718	88287719	rs6419870	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3p11.1	C3orf38, EPHA3	rs6419870-C	0.012	1E-7	(East Asian)	2.05	[0.89-3.21] unit increase	Illumina [up to 13042663] (imputed)	N
1258	chr3	88290281	88290282	rs6763938	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Poultry consumption	335,576 European ancestry individuals	NA	3p11.1	intergenic	rs6763938-?	NR	2E-8		0.023327	[0.015-0.032] unit increase	Affymetrix [25921788] (imputed)	N
1259	chr3	88347210	88347211	rs2219412	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	3p11.1	C3orf38, EPHA3	rs2219412-?	NR	7E-6	(EA)			Illumina [7205781] (imputed)	N
1259	chr3	88387795	88387796	rs9879264	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3p11.1	C3orf38, EPHA3	rs9879264-A	0.44	1E-13		0.0064	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1259	chr3	88445107	88445108	rs9828049	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3p11.1	RP11-249L12.1	rs9828049-A	0.8831	5E-6		0.0458	[0.026-0.066] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1260	chr3	88500872	88500873	rs56264696	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs56264696-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1260	chr3	88524174	88524175	rs2880961	21177773	Moyer AM	2010-12-22	Toxicol Sci	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.	Response to acetaminophen (hepatotoxicity)	60 European ancestry lymphoblastoid cell lines, 56 African American lymphoblastoid cell lines, 60 Han Chinese American lymphoblastoid cell lines	NA	3p11.1	C3orf38	rs2880961-?	0.34	2E-7				Affymetrix, Illumina [1348864]	N
1261	chr3	88619031	88619032	rs141110015	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3p11.1	Intergenic	rs141110015-T	NR	6E-6	(women)	0.118534	[0.067-0.17] unit increase	Illumina [13520550] (imputed)	N
1261	chr3	88640844	88640845	rs57977776	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Ventral thalamic nuclei volume	30,114 white British ancestry individuals			NDUFA5P5	rs57977776-T	0.1003	2E-9		0.0811753	[0.055-0.108] unit increase	Affymetrix [8165723] (imputed)	N
1261	chr3	88640844	88640845	rs57977776	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			NDUFA5P5	rs57977776-T	0.1003	9E-11		0.0874946	[0.061-0.114] unit decrease	Affymetrix [8165723] (imputed)	N
1261	chr3	88714963	88714964	rs112990863	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	3p11.1		rs112990863-T	0.007	9E-6		1.46	[1.24-1.72]	Affymetrix, Illumina [NR] (imputed)	N
1261	chr3	88726843	88726844	rs9830342	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs9830342-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1261	chr3	88731530	88731531	rs145943613	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	3p11.1	NR	rs145943613-?	NR	7E-6		1.9825	[0.92-3.04] unit increase	Illumina [at least 560000] (imputed)	N
1261	chr3	88733286	88733287	rs11128058	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p11.1		rs11128058-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1262	chr3	88738040	88738041	rs76217164	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p11.1	C3orf38, EPHA3	rs76217164-T		4E-6		2.214	unit increase	Affymetrix [at least 2696785] (imputed)	N
1262	chr3	88738040	88738041	rs76217164	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3p11.1	C3orf38, EPHA3	rs76217164-T		1E-8		2.038	unit increase	Affymetrix [at least 2696785] (imputed)	N
1262	chr3	88738040	88738041	rs76217164	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3p11.1	C3orf38, EPHA3	rs76217164-T		1E-7		1.629	unit increase	Affymetrix [at least 2696785] (imputed)	N
1262	chr3	88742702	88742702	rs67518031	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3p11.1		rs67518031-G	0.5	2E-8				NR [NR] (imputed)	N
1262	chr3	88742702	88742702	rs67518031	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3p11.1		rs67518031-G	0.5	6E-6		0.008	mmol/L decrease	NR [NR] (imputed)	N
1262	chr3	88742702	88742702	rs67518031	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3p11.1		rs67518031-G	0.5	1E-12		0.01	% increase	NR [NR] (imputed)	N
1262	chr3	88749698	88749699	rs2345404	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs2345404-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1262	chr3	88757830	88757831	rs11927424	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	3p11.1	C3orf38	rs11927424-?		1E-6		1.307	[NR]	Affymetrix [492217] (imputed)	N
1262	chr3	88768942	88768942	rs142415097	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3p11.1	NR	rs142415097-?		3E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1262	chr3	88770755	88770756	rs4855804	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p11.1	NR	rs4855804-C	0.4973	9E-11		0.016070029	[0.011-0.021] unit increase	Affymetrix [10549349] (imputed)	N
1263	chr3	88898572	88898573	rs11717038	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p11.1	NR	rs11717038-?	NR	2E-6				Illumina [at least 7383741] (imputed)	N
1263	chr3	88934930	88934931	rs6805161	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p11.1	NR	rs6805161-?		2E-8				NR [7428630] (imputed)	N
1263	chr3	88977896	88977897	rs12497795	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (Mean PAL)	up to 4,032 European ancestry individuals	NA	3p11.1	EPHA3	rs12497795-T	0.1	2E-6	(Age 20-81 years)	0.0778	[0.046-0.110] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1263	chr3	88994671	88994672	rs958144	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	3p11.1	NR	rs958144-T		5E-6	(EA)	1.28	unit decrease	Illumina [474792]	N
1264	chr3	89019409	89019410	rs111293219	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	3p11.1	LOC728432	rs111293219-T	0.0417	6E-6		2.119	[1.529-2.936]	Affymetrix, Illumina [14074516] (imputed)	N
1264	chr3	89026496	89026497	rs9824448	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p11.1		rs9824448-?	NR	3E-14				NR [9705931] (imputed)	N
1264	chr3	89047587	89047588	rs72913870	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	3p11.1	ICE2P2	rs72913870-A	0.1093	7E-6		0.085	[0.048-0.122] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1264	chr3	89047758	89047759	rs60942712	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	3p11.1	EPHA3	rs60942712-T	0.101	8E-7		1.211	[1.124- 1.306]	Illumina [at least 560000] (imputed)	N
1264	chr3	89066587	89066588	rs4571247	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	3p11.1	NR	rs4571247-G		6E-6	(EA)	1.25	unit decrease	Illumina [474792]	N
1264	chr3	89076895	89076896	rs13090972	31028280	Ierodiakonou D	2019-04-26	J Expo Sci Environ Epidemiol	Pathway analysis of a genome-wide gene by air pollution interaction study in asthmatic children.	Post-bronchodilator FEV1 x air pollution (NO2) interaction in childhood asthma	522 European ancestry children	88 African-American children	3p11.1	EPHA3	rs13090972-T		1E-6	(EA)	1.33	unit decrease	Illumina [474792]	N
1264	chr3	89081611	89081611	rs138754151	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	3p11.1	NR	rs138754151-?	NR	5E-6		1.2345	[0.75-1.71] unit decrease	Affymetrix [7154205] (imputed)	N
1264	chr3	89121920	89121921	rs9942009	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3p11.1	NA	rs9942009-T	0.3802	3E-12		0.0126	[0.0091-0.0161] unit increase	NR [~ 27400000] (imputed)	N
1265	chr3	89130816	89130817	rs1156979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3p11.1	NR	rs1156979-A	0.38	8E-9		0.011	[0.0073-0.0147] unit increase	Affymetrix [2446094] (imputed)	N
1265	chr3	89130816	89130817	rs1156979	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3p11.1	NR	rs1156979-A	0.38	5E-8				Affymetrix [2446094] (imputed)	N
1265	chr3	89142174	89142175	rs2173039	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs2173039-C	0.258	2E-7	(EA, women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89142174	89142175	rs2173039	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs2173039-C	0.257	4E-7	(EA, women)	0.023	[0.013-0.033] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89142174	89142175	rs2173039	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs2173039-C	0.258	2E-9	(EA, women)	0.024	[0.016-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89145339	89145340	rs12629427	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs12629427-C	0.258	3E-7	(AA, women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89145339	89145340	rs12629427	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs12629427-C	0.254	7E-7	(AA, women)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89145339	89145340	rs12629427	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3p11.1	EPHA3	rs12629427-C	0.258	8E-8	(AA, women)	0.021	[0.013-0.029] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1265	chr3	89147745	89147746	rs7430523	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3p11.1	NR	rs7430523-C	0.911009	1E-8		0.0208754	[0.014-0.028] unit decrease	NR [NR]	N
1265	chr3	89165249	89165250	rs7639401	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3p11.1	NR	rs7639401-?	NR	6E-7				Illumina [at least 7383741] (imputed)	N
1265	chr3	89210365	89210365	rs11432697	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	3p11.1	EPHA3	rs11432697-T	NR	2E-6	(adults)	0.027	[0.015-0.039] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1266	chr3	89346921	89346922	rs143886976	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer treated with carboplatin and paclitaxel	1,751 European ancestry individuals	NA	3p11.1	NR	rs143886976-T		4E-6		0.8991	[0.52-1.28] unit increase	Illumina [12759548] (imputed)	N
1267	chr3	89451097	89451098	rs114870811	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3p11.1	NR	rs114870811-?	NR	2E-8				Illumina [7760689] (imputed)	N
1267	chr3	89463289	89463290	rs73137384	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3p11.1	DAB1	rs73137384-?		4E-11				NR [7428630] (imputed)	N
1267	chr3	89463289	89463290	rs73137384	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3p11.1	INTS3, SLC27A3, GATAD2B, DENND4B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1	rs73137384-?		1E-10				NR [7428630] (imputed)	N
1267	chr3	89467356	89467357	rs11921985	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3p11.1	NR	rs11921985-?		3E-12				NR [7428630] (imputed)	N
1267	chr3	89469452	89469453	rs7632502	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p11.1	NR	rs7632502-?	NR	4E-9	(left inferior temporal)			NR [9227495] (imputed)	N
1267	chr3	89482778	89482779	rs73139257	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs73139257-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1267	chr3	89489528	89489529	rs6771054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3p11.1		rs6771054-C	NR	3E-9		0.0587	[0.039-0.078] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1267	chr3	89489528	89489529	rs6771054	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3p11.1	EPHA3	rs6771054-T	0.596	2E-11		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
1267	chr3	89496501	89496502	rs6551412	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p11.1	NR	rs6551412-A	NR	5E-9		5.838	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	3p11.1	EPHA3	rs35124509-T	0.401	9E-59		16.16467	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	3p11.1		rs35124509-C	0.4	6E-12				NR [13131314] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	3p11.1		rs35124509-C	0.4	1E-13				Affymetrix [9061022] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3p11.1		rs35124509-C	0.4	1E-311		37.74	z score increase	Affymetrix [9061022] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	8,072 individuals	NA	3p11.1		rs35124509-C	0.4	4E-7				NR [13131314] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	5,199 individuals	NA	3p11.1		rs35124509-C	0.4	2E-7				Affymetrix [9061022] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3p11.1		rs35124509-C	0.4	7E-136		24.81	z score increase	Affymetrix [9061022] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3p11.1	NR	rs35124509-C	0.3925	1E-17				NR [9056863] (imputed)	N
1267	chr3	89521692	89521693	rs35124509	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3p11.1	EPHA3	rs35124509-?		1E-42				NR [7428630] (imputed)	N
1268	chr3	89523037	89523038	rs12636275	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3p11.1	KCNK2	rs12636275-?		3E-18				NR [7428630] (imputed)	N
1268	chr3	89523037	89523038	rs12636275	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p11.1	NR	rs12636275-?	NR	2E-10	(right inferior temporal)			NR [9227495] (imputed)	N
1268	chr3	89525504	89525505	rs2117137	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from tea	395,866 European ancestry individuals	NA	3p11.1	EPHA3	rs2117137-A	0.594554	3E-9		0.01349	[0.009-0.0179] unit decrease	Affymetrix [19400838] (imputed)	N
1268	chr3	89525504	89525505	rs2117137	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3p11.1	NR	rs2117137-?		1E-19				NR [7428630] (imputed)	N
1268	chr3	89525504	89525505	rs2117137	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Tea consumption	336,898 European ancestry individuals	39,924 European ancestry individuals	3p11.1	EPHA3	rs2117137-G	0.4048	1E-9		0.0094	[0.0065-0.0123] unit increase	Affymetrix [~ 7740000] (imputed)	N
1268	chr3	89530056	89530057	rs7650184	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3p11.1		rs7650184-A	0.4	6E-77		18.57	z score increase	Affymetrix [9061022] (imputed)	N
1268	chr3	89530056	89530057	rs7650184	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3p11.1	NR	rs7650184-A	0.4001	1E-17				NR [9056863] (imputed)	N
1268	chr3	89530056	89530057	rs7650184	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3p11.1		rs7650184-?	NR	6E-102				NR [9705931] (imputed)	N
1268	chr3	89534376	89534377	rs7632427	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p11.1	EPHA3	rs7632427-T	0.61	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1268	chr3	89534376	89534377	rs7632427	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3p11.1	EPHA3	rs7632427-T	0.6	2E-9	(EA)	1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1268	chr3	89534376	89534377	rs7632427	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3p11.1	NR	rs7632427-?	NR	4E-8	(Meta-All, NSCL/P)			NR [497084]	N
1268	chr3	89534376	89534377	rs7632427	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3p11.1	EPHA3	rs7632427-T	NR	4E-8	(Meta-All, NSCL/P)	1.37	[1.20-1.55]	NR [497084]	N
1268	chr3	89550444	89550445	rs73146960	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Ventral thalamic nuclei volume	30,114 white British ancestry individuals			EPHA3	rs73146960-C	0.2817	7E-11		0.060184	[0.042-0.078] unit decrease	Affymetrix [8165723] (imputed)	N
1268	chr3	89552133	89552134	rs111618480	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p11.1	Intergenic	rs111618480-T	0.7666	1E-11	(MTAG)	0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1268	chr3	89560126	89560127	rs149336222	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3p11.1	NR	rs149336222-T	0.1051	2E-7		0.0775	[0.048-0.107] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1268	chr3	89578574	89578575	rs73145312	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			EPHA3	rs73145312-T	0.2818	7E-9		0.0532272	[0.035-0.071] unit increase	Affymetrix [8165723] (imputed)	N
1268	chr3	89587261	89587262	rs7652296	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p11.1	NR	rs7652296-A	NR	4E-9		5.906	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1268	chr3	89590901	89590902	rs1979837	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3p11.1	Intergenic	rs1979837-T	0.5503	3E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1269	chr3	89724216	89724217	rs7613412	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3p11.1	NR	rs7613412-?	NR	9E-9	(left lingual)			NR [9227495] (imputed)	N
1269	chr3	89736691	89736692	rs6551418	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3p11.1	NR	rs6551418-?	NR	3E-6				Affymetrix [NR]	N
1269	chr3	89753399	89753400	rs6773817	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3p11.1	NR	rs6773817-?	NR	3E-6		4.697	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1270	chr3	89891344	89891345	rs73846279	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3p11.1	EPHA3, PROS1	rs73846279-?	NR	5E-7	(Hispanic)	1.57	[1.32-1.88]	Illumina [at least 5000000] (imputed)	N
1271	chr3	89983402	89983403	rs13071002	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs13071002-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1271	chr3	89986279	89986280	rs11716527	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3p11.1	NR	rs11716527-C	0.0945	7E-9		0.0492	[0.033-0.066] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1272	chr3	90049320	90049321	rs145367119	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	3p11.1	NR	rs145367119-C	NR	4E-6		0.006397	[0.0037-0.0091] unit increase	NR [11010159] (imputed)	N
1272	chr3	90049320	90049321	rs145367119	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	3p11.1	NR	rs145367119-C	NR	1E-8		0.00604003	[0.0039-0.0081] unit increase	NR [11010159] (imputed)	N
1272	chr3	90049320	90049321	rs145367119	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	151,836 British ancestry cases, 255,230 British ancestry controls	NA	3p11.1	NR	rs145367119-C	NR	6E-6	(adjusted for BMI)	0.004741	[0.0027-0.0068] unit increase	NR [11010159] (imputed)	N
1272	chr3	90173432	90173433	rs62277680	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3p11.1	NR	rs62277680-G	0.04722	2E-9		0.03550449	[0.024-0.047] unit increase	Affymetrix [10549349] (imputed)	N
1273	chr3	90234501	90234502	rs7433076	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3p11.1	EPHA3	rs7433076-T	0.522565	5E-12		0.00951719	[0.0068-0.0122] unit increase	Affymetrix [12370749]	N
1273	chr3	90272432	90272433	rs28637895	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Posterior thalamic nuclei volume	30,114 white British ancestry individuals			PROSP	rs28637895-T	0.256	1E-14		0.067587	[0.049-0.086] unit decrease	Affymetrix [8165723] (imputed)	N
1273	chr3	90299369	90299370	rs7432427	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3p11.1	NR	rs7432427-A	NR	6E-9		5.825	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1274	chr3	90330553	90330554	rs9821024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3p11.1		rs9821024-A	NR	3E-10		0.0109	[0.0076-0.0142] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1274	chr3	90330553	90330554	rs9821024	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3p11.1		rs9821024-A	NR	6E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1274	chr3	90368236	90368237	rs9682919	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3p11.1	Intergenic	rs9682919-A	0.6536	5E-9	(MTAG)	0.0142	[0.0095-0.0189] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1274	chr3	90408447	90408448	rs149460172	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs149460172-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1275	chr3	90454394	90454395	rs189894228	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3p11.1	NR	rs189894228-?	NR	1E-6	(Native Hawaiian)	1.0929	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1275	chr3	90485150	90485151	rs35150875	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3p11.1	Intergenic	rs35150875-A	0.0917	2E-8	(MTAG)	0.0174	[0.011-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1275	chr3	90494515	90494516	rs73143793	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs73143793-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1275	chr3	90502282	90502283	rs138171634	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3p11.1	NR	rs138171634-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1275	chr3	90502282	90502283	rs138171634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3p11.1		rs138171634-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1298	chr3	93518028	93518029	rs9713501	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q11.1	NR	rs9713501-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1298	chr3	93529865	93529866	rs35714284	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q11.1	NR	rs35714284-?	NR	4E-6		4.623	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1298	chr3	93537922	93537923	rs62266110	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	3q11.1	RNU6, 488P	rs62266110-G	0.319	1E-9		6.0833607	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1298	chr3	93537922	93537923	rs62266110	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q11.1	NR	rs62266110-A	0.3176	1E-17				NR [9056863] (imputed)	N
1298	chr3	93537922	93537923	rs62266110	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q11.1	NR	rs62266110-A	0.3176	1E-17				NR [9056863] (imputed)	N
1298	chr3	93537922	93537923	rs62266110	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q11.1	NR	rs62266110-A	NR	1E-8		5.684	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1299	chr3	93690846	93690847	rs60136336	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q11.1	NR	rs60136336-?	NR	2E-6	(Native Hawaiian)	0.7505	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1300	chr3	93791389	93791390	rs6414259	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	3q11.2	NR	rs6414259-?		3E-6				Illumina [892589]	N
1301	chr3	93869429	93869430	rs73159600	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum white matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q11.2	NR	rs73159600-?		5E-6				Illumina [4322238] (imputed)	N
1301	chr3	93874453	93874454	rs10934957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	3q11.2		rs10934957-C	NR	1E-8		0.0543	[0.035-0.073] unit decrease	Affymetrix, Illumina [25832605] (imputed)	N
1301	chr3	93874453	93874454	rs10934957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3q11.2		rs10934957-C	NR	3E-8		0.0397	[0.026-0.054] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
1301	chr3	93903458	93903459	rs73161420	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q11.2	NR	rs73161420-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1301	chr3	93958904	93958905	rs376804862	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	3q11.2		rs376804862-?	NR	7E-6				Illumina [7401356] (imputed)	N
1302	chr3	93981059	93981060	rs978444	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q11.2	NR	rs978444-G	0.4136	4E-9		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1302	chr3	93985099	93985100	rs897186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q11.2	NR	rs897186-?	NR	3E-28				Affymetrix [~ 8270000] (imputed)	N
1302	chr3	93986370	93986371	rs2034768	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3q11.2	NR	rs2034768-?		9E-12		0.0147356	[0.011-0.019] unit increase	Affymetrix [19400418] (imputed)	N
1302	chr3	93994254	93994255	rs13066454	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q11.2	NR	rs13066454-T	0.398	3E-11		0.00895544	[0.0063-0.0116] unit decrease	NR [~ 9732723] (imputed)	N
1302	chr3	93994254	93994255	rs13066454	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3q11.2	NR	rs13066454-T	0.398	4E-9		0.008775946	[0.0059-0.0117] unit decrease	NR [~ 10000000] (imputed)	N
1302	chr3	94001405	94001406	rs62266986	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3q11.2		rs62266986-?	NR	6E-6		0.07076552	[0.04-0.101] unit increase	Illumina [9939936] (imputed)	N
1302	chr3	94003602	94003603	rs1580099	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q11.2	NA	rs1580099-A	0.5775	7E-27		0.0179	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr3	94003602	94003603	rs1580099	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q11.2	NA	rs1580099-A	0.5775	7E-27		0.0179	[0.015-0.021] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr3	94006242	94006243	rs9819555	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q11.2	NSUN3	rs9819555-G	0.434856	2E-9		0.0122903	[0.0082-0.0164] unit decrease	NR [16516521] (imputed)	N
1302	chr3	94018100	94018101	rs9855177	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q11.2	NR	rs9855177-?	NR	7E-6		4.483	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1302	chr3	94027330	94027330	rs202110996	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	3q11.2	NR	rs202110996-A	NR	1E-6		0.006814	[0.0041-0.0096] unit increase	NR [11010159] (imputed)	N
1302	chr3	94027330	94027330	rs202110996	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	3q11.2	NR	rs202110996-A	NR	5E-9		0.00623046	[0.0041-0.0084] unit increase	NR [11010159] (imputed)	N
1302	chr3	94031838	94031839	rs13073568	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q11.2		rs13073568-T	NR	1E-22		0.019	[0.015-0.023] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1302	chr3	94037498	94037499	rs4857330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q11.2		rs4857330-C	NR	2E-17		0.0146	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q11.2		rs1454687-G	NR	9E-10		0.0126	[0.0085-0.0167] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3q11.2		rs1454687-C	0.48	4E-7		0.01	mmol/L increase	NR [NR] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3q11.2		rs1454687-C	0.48	2E-6		0.009	nmol/L decrease	NR [NR] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q11.2		rs1454687-C	0.48	1E-14				NR [NR] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q11.2		rs1454687-C	0.48	6E-20		0.013	% increase	NR [NR] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3q11.2		rs1454687-C	0.48	6E-7		0.01	U/L increase	NR [NR] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q11.2	NSUN3	rs1454687-C	0.484614	3E-19		0.0122831	[0.0096-0.015] unit increase	Affymetrix [12370749]	N
1302	chr3	94038084	94038085	rs1454687	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q11.2	NR	rs1454687-C	0.4846	1E-20		0.023007117	[0.018-0.028] unit increase	Affymetrix [10549349] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q11.2		rs1454687-?	NR	1E-30				NR [~ 8900000] (imputed)	N
1302	chr3	94038084	94038085	rs1454687	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3q11.2	DHFRL1	rs1454687-C	0.4846	2E-10		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
1302	chr3	94039385	94039386	rs4857338	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q11.2	NR	rs4857338-T	0.56	3E-10		0.0116	[0.008-0.0152] unit decrease	NR [NR]	N
1302	chr3	94039385	94039386	rs4857338	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q11.2	NR	rs4857338-T	0.566	9E-11		0.00705121	[0.0049-0.0092] unit decrease	NR [9732723] (imputed)	N
1302	chr3	94042393	94042394	rs4000279	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q11.2	NR	rs4000279-?	NR	7E-9				Affymetrix [~ 8270000] (imputed)	N
1302	chr3	94047371	94047372	rs9877137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q11.2	Intergenic	rs9877137-T	0.437	4E-12	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr3	94047371	94047372	rs9877137	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q11.2	Intergenic	rs9877137-T	0.4343	1E-8	(MTAG)	0.0075	[0.005-0.01] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr3	94051718	94051722	rs4025786	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q11.2	NR	rs4025786-G	NR	4E-9		0.0142	[0.0095-0.0189] unit decrease	Affymetrix [9000000] (imputed)	N
1302	chr3	94051731	94051735	rs397990538	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q11.2		rs397990538-G	NR	5E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1302	chr3	94055819	94055820	rs6801125	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	3q11.2	LOC389137	rs6801125-C		2E-6		1.26	[1.15-1.39]	Illumina [569200]	N
1302	chr3	94071480	94071481	rs1492014	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q11.2	NA	rs1492014-T	0.5674	1E-23		0.0171	[0.014-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1302	chr3	94071480	94071481	rs1492014	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q11.2	Intergenic	rs1492014-T	0.5801	2E-12	(MTAG)	0.0128	[0.0093-0.0163] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1302	chr3	94075025	94075026	rs13066686	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q11.2	NR	rs13066686-C	0.591866	2E-11		0.0135334	[0.0096-0.0175] unit increase	NR [NR]	N
1302	chr3	94108662	94108663	rs7624041	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	3q11.2	NSUN3	rs7624041-G	0.08	5E-9		1.21	[1.13-1.28]	Affymetrix, Illumina [6192596] (imputed)	N
1303	chr3	94145115	94145116	rs73166548	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q11.2	NSUN3	rs73166548-T	0.2831	1E-9		0.015927657	[0.011-0.021] unit decrease	Affymetrix [11515109] (imputed)	N
1303	chr3	94173894	94173895	rs17749394	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	3q11.2	intergenic	rs17749394-A	0.06	2E-6	(female)	0.475	[0.28-0.67] unit decrease	Illumina [6380737] (imputed)	N
1303	chr3	94195543	94195544	rs139030286	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	3q11.2	NR	rs139030286-?	NR	6E-6		0.8962	[0.45-1.34] unit increase	Illumina [at least 560000] (imputed)	N
1303	chr3	94196194	94196195	rs9817394	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q11.2	NSUN3	rs9817394-A	0.557	1E-9		0.0072	[0.0048-0.0096] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1303	chr3	94206939	94206940	rs9835892	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q11.2		rs9835892-C	0.573	2E-15		0.01	[0.008-0.012] unit decrease	NR [NR] (imputed)	N
1303	chr3	94209590	94209591	rs34199564	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 30)	4,680 European ancestry individuals	3,566 European ancestry individuals	3q11.2		rs34199564-A	0.196408901	2E-8				Illumina [7417619] (imputed)	N
1304	chr3	94243712	94243713	rs13067306	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	3q11.2	NSUN3	rs13067306-A	0.01	5E-6	(MAP, during intervention)	4.51	[2.57-6.45] mmHg increase	Affymetrix [2216774] (imputed)	N
1304	chr3	94243712	94243713	rs13067306	24165912	He J	2013-10-28	Circ Cardiovasc Genet	Genome-wide association study identifies 8 novel loci associated with blood pressure responses to interventions in Han Chinese.	Blood pressure measurement (high sodium intervention)	1,840 Han Chinese ancestry individuals	659 Han Chinese ancestry individuals	3q11.2	NSUN3	rs13067306-A	0.01	4E-7	(DBP, during intervention)	4.86	[2.98-6.74] mmHg increase	Affymetrix [2216774] (imputed)	N
1304	chr3	94362045	94362046	rs112639195	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	3q11.2	NR	rs112639195-?	NR	8E-6		0.7554	[0.38-1.13] unit increase	Illumina [at least 560000] (imputed)	N
1305	chr3	94437766	94437767	rs148372345	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	3q11.2	MIR6730	rs148372345-C	0.9814	5E-6		0.0279	[0.016-0.04] unit increase	Affymetrix [~ 7740000] (imputed)	N
1306	chr3	94551178	94551179	rs9288782	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q11.2	NR	rs9288782-?	NR	2E-9				Affymetrix [NR]	N
1306	chr3	94581145	94581146	rs4629334	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Major depressive disorder vs anorexia nervosa (ordinary least squares (OLS))	170,756 MDD cases, 16,992 anorexia nervosa cases	NA	3q11.2		rs4629334-?	NR	2E-8		0.0139	NR unit increase	NR [5460735] (imputed)	N
1306	chr3	94605106	94605107	rs13100344	31308545	Watson HJ	2019-07-15	Nat Genet	Genome-wide association study identifies eight risk loci and implicates metabo-psychiatric origins for anorexia nervosa.	Anorexia nervosa	16,992 European ancestry cases, 55,525 European ancestry controls	NA	3q11.2	NSUN3	rs13100344-T	0.54	4E-8		1.08	[1.06-1.1]	Affymetrix, Illumina [at least 8111819] (imputed)	N
1307	chr3	94643906	94643907	rs11718065	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q11.2	NSUN3	rs11718065-A	0.2883	5E-8		0.0155458	[0.01-0.0211] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1308	chr3	94828189	94828190	rs9866687	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	3q11.2		rs9866687-?	NR	4E-8		0.013	NR unit increase	NR [4548414] (imputed)	N
1309	chr3	94952473	94952474	rs10511150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q11.2	DHFRL1	rs10511150-?	NR	6E-6	(LPE 22:6)	0.1940178	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1309	chr3	94952473	94952474	rs10511150	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q11.2	DHFRL1	rs10511150-?	NR	5E-6	(LPC 18:0)	0.1942524	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1310	chr3	95028065	95028066	rs13097088	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Herbidospora abundance in stool	5,959 Finnish ancestry individuals	NA	3q11.2		rs13097088-T	0.271817	5E-8		0.0305205	[0.02-0.041] unit decrease	Illumina [7980478] (imputed)	N
1310	chr3	95104239	95104240	rs9288898	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q11.2	NR	rs9288898-?	NR	6E-10				Affymetrix [NR]	N
1310	chr3	95109026	95109027	rs12486601	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q11.2	NSUN3	rs12486601-A	0.7146	1E-10		0.0167819	[0.012-0.022] unit decrease	Affymetrix [11515109] (imputed)	N
1310	chr3	95149731	95149732	rs112633395	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q11.2	NR	rs112633395-C	0.02787	2E-8	(DHRS4)	0.1171	NR unit decrease	Illumina [1671387] (imputed)	N
1310	chr3	95149988	95149989	rs9863884	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q11.2	NR	rs9863884-?	NR	1E-6				Affymetrix [NR]	N
1313	chr3	95522999	95523000	rs59042687	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3q11.2	LINC00879	rs59042687-T	NR	6E-9	(Lactobacillales order)	0.23	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1314	chr3	95624466	95624467	rs9825648	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	3q11.2	NR	rs9825648-?		3E-6				Illumina [892589]	N
1315	chr3	95688842	95688843	rs9814870	19478329	Aston KI	2009-05-28	J Androl	Genome-wide study of single-nucleotide polymorphisms associated with azoospermia and severe oligozoospermia.	Male infertility	52 European ancestry oligozoospermic cases, 40 European ancestry non-obstructive azoospermic cases, 80 European ancestry controls	NA	3q11.2	ARL6	rs9814870-?	0.15	7E-7	(oligozoospermia)			Illumina [314776]	N
1315	chr3	95769848	95769849	rs4462981	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in breast cancer	7,697 European ancestry cases, 88,964 European ancestry controls	NA	3q11.2	NR	rs4462981-?	NR	4E-6		1.1208384	[1.07-1.18]	Affymetrix, Illumina [~ 10400000] (imputed)	N
1315	chr3	95784305	95784306	rs5004949	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Subjective wellbeing conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	298,420 European ancestry individuals	NA	3q11.2		rs5004949-?	NR	5E-8				NR [NR]	N
1316	chr3	95853631	95853632	rs111325002	23958962	Gelernter J	2013-08-20	Mol Psychiatry	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Cocaine dependence	1,809 European ancestry cases, 570 European ancestry controls, 2,482 African American cases, 836 African American controls	4,498 European ancestry individuals, 2,114 African American individuals	3q11.2	intergenic	rs111325002-?	NR	4E-7	(AA)			Illumina [37426733] (imputed)	N
1318	chr3	96150159	96150160	rs10934524	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	3q11.2	EPHA6	rs10934524-T	NR	5E-7		1.266	[NR]	Illumina [5595657] (imputed)	N
1318	chr3	96165410	96165411	rs326251	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	3q11.2	intergenic	rs326251-C	0.333	4E-6			[NR]	Illumina [625127]	N
1319	chr3	96314014	96314015	rs35170539	33437055	Panyard DJ	2021-01-12	Commun Biol	Cerebrospinal fluid metabolomics identifies 19 brain-related phenotype associations.	Oxalate (ethanedioate) levels	291 European ancestry individuals	NA	3q11.2		rs35170539-A	0.1368	6E-11		0.0595	unit decrease	Illumina [7049691] (imputed)	N
1319	chr3	96328826	96328827	rs6796026	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q11.2	RPL18AP8	rs6796026-A	0.0080	8E-6	(IGF1 free )	0.03	[NR] ng/mL increase	Illumina [899892]	N
1320	chr3	96344399	96344400	rs4346561	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	3q11.2	EPHA6	rs4346561-T	0.2463	2E-6		0.0325	[0.019-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1320	chr3	96400598	96400599	rs6793516	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	3q11.2	EPHA6	rs6793516-?	NR	5E-6		2.372	[1.36-3.39] unit increase	Illumina [> 2500000] (imputed)	N
1322	chr3	96682261	96682262	rs7650621	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q11.2	EPHA6	rs7650621-C	0.0060	2E-6	(IGF1 free )	0.04	[NR] ng/mL increase	Illumina [899892]	N
1324	chr3	96910963	96910964	rs4857055	29208002	Kim M	2017-12-06	Lipids Health Dis	EPHA6 rs4857055 C > T polymorphism associates with hypertension through triglyceride and LDL particle size in the Korean population.	Systolic blood pressure	2146 East Asian ancestry individuals	NA	3q11.2	EPHA6	rs4857055-?		3E-8				Affymetrix [394222]	N
1326	chr3	97138467	97138469	rs113526453	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer treated with carboplatin and paclitaxel	2,352 European ancestry individuals	NA	3q11.2	NR	rs113526453-T		5E-6		1.1278	[0.65-1.61] unit increase	Illumina [12764477] (imputed)	N
1326	chr3	97168739	97168740	rs1458303	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Cu levels)	2,603 European ancestry individuals	NA	3q11.2	EPHA6	rs1458303-?	NR	3E-7		2.978	[1.84-4.12] unit increase	Illumina [> 2500000] (imputed)	N
1326	chr3	97202241	97202242	rs9871066	28701861	Randall CL	2017-06-15	Pain Res Manag	A Preliminary Genome-Wide Association Study of Pain-Related Fear: Implications for Orofacial Pain.	Fear of minor pain	Up to 1,367 European ancestry individuals, up to 159 African American individuals, up to 13 Hispanic individuals, up to 23 Asian, Native American and other ancestry individuals, up to 21 individuals	NA	3q11.2	NR	rs9871066-G	0.02	3E-7		2.56	unit decrease	Illumina [8591557] (imputed)	N
1326	chr3	97221893	97221894	rs116500148	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Myringotomy	4,138 European ancestry cases, 85,089 European ancestry controls	NA	3q11.2	NR	rs116500148-?	NR	7E-6		0.4772	[0.26-0.7] unit decrease	Illumina [at least 560000] (imputed)	N
1327	chr3	97367561	97367562	rs76038182	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		EPHA6	rs76038182-?	NR	4E-8	(female)	0.274363	[NR] unit increase	Affymetrix [NR] (imputed)	N
1328	chr3	97412360	97412361	rs183108678	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q11.2	EPHA6	rs183108678-T	0.0057	3E-6		0.2432	[0.14-0.34] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1330	chr3	97685328	97685329	rs9853899	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q11.2	NR	rs9853899-A	0.0122	2E-8	(B2M)	0.01554	NR unit decrease	Illumina [1671387] (imputed)	N
1330	chr3	97736803	97736804	rs6788085	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q11.2	NR	rs6788085-?	NR	1E-6		0.158515	[0.095-0.222] unit increase	NR [13958389] (imputed)	N
1331	chr3	97859693	97859694	rs35123024	29097388	Magvanjav O	2017-11-02	J Am Heart Assoc	Genetic Variants Associated With Uncontrolled Blood Pressure on Thiazide Diuretic/?-Blocker Combination Therapy in the PEAR (Pharmacogenomic Evaluation of Antihypertensive Responses) and INVEST (International Verapamil-SR Trandolapril Study) Trials.	Uncontrolled blood pressure in combination therapy (beta blocker and thiazide diuretic)	123 European ancestry cases, 191 European ancestry controls	85 European ancestry cases, 136 European ancestry controls, 81 Hispanic cases, 112 Hispanic controls	3q11.2	RP11-343D2.11, OR5H14	rs35123024-C	0.15	4E-6		2.57		Illumina [NR] (imputed)	N
1331	chr3	97868032	97868033	rs76151810	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine (responder status) in treatment resistant depression	255 European ancestry individuals	NA	3q11.2	NR	rs76151810-?		6E-6		6.8437	[6.01-7.67]	NR [NR] (imputed)	N
1332	chr3	97917644	97917645	rs75311156	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder (persistent)	6,532 European ancestry cases, 15,874 European ancestry controls	NA	3q11.2	NR	rs75311156-?	0.82	4E-6		1.1627907	[1.09-1.23]	Illumina [~ 1113287] (imputed)	N
1332	chr3	97954451	97954452	rs189602288	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM9	5,349 Icelandic ancestry individuals	NA	3q11.2		rs189602288-T	0.01043	2E-21		0.860552	[0.68-1.04] unit decrease	Illumina [7506463] (imputed)	N
1332	chr3	98034525	98034526	rs1497546	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	3q11.2	OR5H2	rs1497546-?	0.02	2E-7		6.57	[NR]	Illumina [866399]	N
1333	chr3	98061221	98061222	rs114140144	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Gramella abundance in stool	5,959 Finnish ancestry individuals	NA	3q11.2		rs114140144-G	0.0133816	1E-8		0.145914	[0.096-0.196] unit increase	Illumina [7980478] (imputed)	N
1333	chr3	98152333	98152334	rs79134578	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC117473.1	rs79134578-?	NR	1E-8	(male)	3.26118	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1333	chr3	98169441	98169442	rs75457563	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q11.2	NR	rs75457563-?	NR	6E-6		2209.691	NR unit increase	Illumina [2379855]	N
1334	chr3	98188579	98188580	rs138585571	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	3q11.2		rs138585571-T	0.038192	3E-7		1.8076645	NR	Affymetrix [7846216] (imputed)	N
1334	chr3	98190826	98190827	rs78443530	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		OR5K1	rs78443530-?	NR	1E-8	(male)	2.51716	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1334	chr3	98237185	98237186	rs145583199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q11.2	CLDND1	rs145583199-C	0.999	3E-7	(AA)	0.41	unit increase	Illumina [NR] (imputed)	N
1334	chr3	98250214	98250215	rs4857399	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	3q11.2	GPR15	rs4857399-?	0.2	6E-6	(model 2)	0.209	NR unit decrease	Illumina [628376]	N
1334	chr3	98250214	98250215	rs4857399	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	3q11.2	GPR15	rs4857399-?	0.2	3E-6	(women)	0.27	NR unit decrease	Illumina [628376]	N
1334	chr3	98272997	98272998	rs75743867	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q11.2	NR	rs75743867-?	NR	2E-6		2878.8584	NR unit decrease	Illumina [2379855]	N
1335	chr3	98312580	98312581	rs4857406	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3q11.2		rs4857406-G	0.468494	1E-8		0.0220745	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1335	chr3	98354190	98354191	rs34070949	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Angiopoietin-1 receptor levels	21,758 European ancestry individuals	9,173 individuals	3q12.1		rs34070949-A	0.48	5E-13		0.0644	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1335	chr3	98354661	98354662	rs58475214	32358372	Ouyang H	2020-05-01	Medicine (Baltimore)	Constructing gene network for type 1 narcolepsy based on genome-wide association study and differential gene expression analysis (STROBE).	Narcolepsy with cataplexy	903 Chinese ancestry cases, 1,982 Chinese ancestry controls	NA	3q12.1	NR	rs58475214-?	NR	5E-6		1.393	[1.2090-1.6060]	Affymetrix [237955] (imputed)	N
1335	chr3	98368864	98368866	rs34336071	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	WWP1P1	rs34336071-C	0.485	4E-16	(Vascular endothelial growth factor receptor 2, KDR.3651.50.5)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1335	chr3	98380725	98380726	rs10804683	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	VEGFR 3 plasma levels	400 French ancestry individuals	NA	3q12.1		rs10804683-A	NR	7E-16		0.312	[0.24-0.38] ng/mL increase	Illumina [5201092] (imputed)	N
1335	chr3	98394870	98394871	rs1584335	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Third ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q12.1	NR	rs1584335-?		8E-6				Illumina [4322238] (imputed)	N
1335	chr3	98396349	98396350	rs13318932	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q12.1	Intergenic	rs13318932-T	0.09929789	8E-13	(EA, Vascular endothelial growth factor receptor 3)	0.5146	[0.38-0.65] unit increase	Affymetrix [509946]	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein UMOD	5,365 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	1E-91		0.372149	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TIE1	5,364 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	4E-29		0.210099	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PDCD1LG2	5,357 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	7E-22		0.174033	[0.14-0.21] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KDR	5,361 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	3E-23		0.184765	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1R1	5,362 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	2E-20		0.164692	[0.13-0.2] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FLT4	5,365 Icelandic ancestry individuals	NA	3q12.1		rs11927405-T	0.4344	3E-272		0.6077	[0.57-0.64] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q12.1		rs11927405-T	0.44048	4E-10		0.013983002	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1335	chr3	98402968	98402969	rs11927405	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.1	NR	rs11927405-T	0.444088	3E-14				Affymetrix, Illumina [23114412] (imputed)	N
1335	chr3	98406793	98406794	rs12493830	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD5	5,367 Icelandic ancestry individuals	NA	3q12.1		rs12493830-C	0.4318	8E-93		0.374942	[0.34-0.41] unit decrease	Illumina [7506463] (imputed)	N
1335	chr3	98406793	98406794	rs12493830	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q12.1		rs12493830-C	NR	5E-11		0.014	[0.0099-0.0181] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1335	chr3	98406793	98406794	rs12493830	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q12.1		rs12493830-C	0.440688	9E-12		0.015202626	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr3	98406793	98406794	rs12493830	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q12.1	ST3GAL6-AS1	rs12493830-C	0.427	1E-14	(CD200R1)	0.43061	[0.27-0.59] unit decrease	Illumina [8683751] (imputed)	N
1335	chr3	98406932	98406933	rs12496730	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q12.1	ST3GAL6-AS1	rs12496730-C	0.4306	1E-33	(Siglec-9)	0.67735	[0.57-0.79] unit decrease	Illumina [8683751] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	1E-10		0.0240551	[0.017-0.031] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	1E-8		0.02352	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	1E-11		0.0252662	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	3E-9		0.0229274	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	3E-8		0.0208142	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	3E-9		0.0221487	[0.015-0.029] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3q12.1		rs10935473-G	0.557568	2E-9		0.0224869	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	E-selectin levels	21,758 European ancestry individuals	9,173 individuals	3q12.1		rs10935473-T	0.45	6E-23		0.0799	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q12.1	NR	rs10935473-T	0.440183	8E-10		0.013647105	[0.0093-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.1	NR	rs10935473-T	0.449586	2E-13				Affymetrix, Illumina [24649327] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q12.1	NR	rs10935473-T	0.442233	3E-15		0.014641	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q12.1	NR	rs10935473-T	0.441514	2E-16		0.015957	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.1	NR	rs10935473-T	0.444664	2E-44				Affymetrix, Illumina [23467995] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q12.1	NR	rs10935473-T	0.441522	2E-40		0.025021	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q12.1	NR	rs10935473-?	NR	1E-35	(VEGF sR3)			Illumina [~ 4000000] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	31932740	Bonomi A	2020-01-14	Genes Immun	Analysis of the genetic variants associated with circulating levels of sgp130. Results from the IMPROVE study.	Soluble gp130 levels	3,439 European ancestry individuals	NA	3q12.1	intergenic	rs10935473-T		9E-6		0.014	[0.0081-0.0199] unit decrease	Illumina [360842]	N
1335	chr3	98416899	98416900	rs10935473	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	ST3GAL6-AS1	rs10935473-T	0.444	9E-29	(Tyrosine-protein kinase receptor Tie-1, soluble, TIE1.2844.53.2)	0.27	[0.23-0.31] unit decrease	Affymetrix [10572788] (imputed)	N
1335	chr3	98416899	98416900	rs10935473	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	ST3GAL6-AS1	rs10935473-T	0.444	1E-215	(Vascular endothelial growth factor receptor 3, FLT4.2358.19.2)	0.69	[0.65-0.73] unit decrease	Affymetrix [10572788] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555465	9E-13		0.0273025	[0.02-0.035] unit increase	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555465	4E-8		0.0202918	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555448	3E-11		0.0277352	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555448	4E-11		0.0276013	[0.019-0.036] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555465	2E-8		0.0221367	[0.014-0.03] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555448	3E-10		0.0262563	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	3q12.1		rs62276455-T	0.555448	7E-10		0.0227796	[0.016-0.03] unit increase	NR [11722792] (imputed)	N
1335	chr3	98417480	98417481	rs62276455	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q12.1		rs62276455-A	0.442504	4E-27		0.02404151	[0.02-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr3	98428154	98428155	rs10935478	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q12.1		rs10935478-T	NR	3E-20		0.0191	[0.015-0.023] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1335	chr3	98428154	98428155	rs10935478	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q12.1		rs10935478-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1335	chr3	98429218	98429219	rs73133996	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q12.1	ST3GAL6-AS1	rs73133996-C	0.439868	1E-11		0.015056034	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1335	chr3	98431985	98431986	rs10935480	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q12.1	ST3GAL6-AS1	rs10935480-T	0.458794	1E-69	(Vascular endothelial growth factor receptor 3)	0.7266	[0.65-0.8] unit decrease	Affymetrix [509946]	N
1335	chr3	98433966	98433967	rs73133999	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		3q12.1	NR	rs73133999-G	0.9644714	7E-6		1.1210762	[1.07-1.17]	Affymetrix [7791636] (imputed)	N
1335	chr3	98434492	98434493	rs13065271	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ICAM2	5,358 Icelandic ancestry individuals	NA	3q12.1		rs13065271-T	0.4442	2E-13		0.136243	[0.1-0.173] unit decrease	Illumina [7506463] (imputed)	N
1336	chr3	98436752	98436753	rs9858592	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q12.1		rs9858592-C	NR	4E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1336	chr3	98437139	98437140	rs9858954	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q12.1		rs9858954-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1336	chr3	98442050	98442051	rs75056698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q12.1	ST3GAL6-AS1	rs75056698-C	0.256115	1E-14		0.019429203	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr3	98442050	98442051	rs75056698	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q12.1	ST3GAL6-AS1	rs75056698-C	0.256118	3E-13		0.018379066	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1336	chr3	98442321	98442322	rs62276459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	3q12.1		rs62276459-A	NR	4E-8		0.0623	[0.04-0.084] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
1336	chr3	98442321	98442322	rs62276459	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.1	NR	rs62276459-A	0.2722	1E-12				Affymetrix, Illumina [19872809] (imputed)	N
1336	chr3	98447139	98447140	rs7620634	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	3q12.1	ST3GAL6	rs7620634-G	0.74532	2E-8		1.06	[1.04-1.08]	Affymetrix [7600000] (imputed)	N
1336	chr3	98447139	98447140	rs7620634	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	3q12.1	ST3GAL6	rs7620634-G	0.734309	9E-9		1.0526316	[1.04-1.08]	Affymetrix, Illumina [up to 9061544] (imputed)	N
1336	chr3	98449741	98449742	rs3755569	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3q12.1		rs3755569-?	NR	3E-7		0.937123	[0.91-0.96]	NR [685523]	N
1336	chr3	98456930	98456931	rs10470451	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q12.1		rs10470451-T	NR	2E-10		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1336	chr3	98459174	98459174	rs137867987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q12.1	NR	rs137867987-I	0.255401	2E-14		0.017862	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1336	chr3	98487205	98487206	rs3213958	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q12.1	ST3GAL6	rs3213958-G	0.1088265	4E-11	(EA, Vascular endothelial growth factor receptor 3)	0.4665	[0.33-0.6] unit decrease	Affymetrix [509946]	N
1336	chr3	98489914	98489915	rs1440152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q12.1		rs1440152-G	NR	2E-24		0.0219	[0.018-0.026] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1336	chr3	98492491	98492491	rs5851138	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	NR	rs5851138-CAT	0.92	7E-59	(Type 2 lactosamine alpha-2,3-sialyltransferase, ST3GAL6.6947.4.3)	0.72	[0.64-0.8] unit decrease	Affymetrix [10572788] (imputed)	N
1336	chr3	98498566	98498567	rs79935131	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q12.1	NR	rs79935131-G	0.9186	2E-10		0.022329	[0.015-0.029] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1336	chr3	98500099	98500100	rs9855175	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3q12.1	ST3GAL6	rs9855175-?	NA	5E-8		1.36	[0.87-1.85] unit decrease	Affymetrix [5541230] (imputed)	N
1336	chr3	98509704	98509705	rs72934623	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	ST3GAL6	rs72934623-A	0.053	3E-385	(Type 2 lactosamine alpha-2,3-sialyltransferase, ST3GAL6.6947.4.3)	1.88	[1.8-1.96] unit decrease	Affymetrix [10572788] (imputed)	N
1336	chr3	98517842	98517843	rs3796133	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q12.1	NR	rs3796133-G	0.94265625	5E-331	(ST3GAL6, 6947_4_3)	1.8496727	[1.77-1.93] unit increase	Illumina [> 1000000] (imputed)	N
1336	chr3	98517842	98517843	rs3796133	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q12.1	NR	rs3796133-G	0.94265625	1E-14	(DCBLD2, 9338_2_3)	0.3961911	[0.3-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1336	chr3	98539568	98539569	rs79590991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q12.1		rs79590991-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1336	chr3	98540930	98540931	rs9843214	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q12.1	DCBLD2	rs9843214-T	0.550688	4E-26		0.00240509	[0.0019-0.0029] unit increase	Affymetrix [13995440] (imputed)	N
1337	chr3	98576310	98576311	rs140620086	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	NR	rs140620086-T	0.049	2E-320	(Type 2 lactosamine alpha-2,3-sialyltransferase, ST3GAL6.6947.4.3)	1.88	[1.78-1.98] unit decrease	Affymetrix [10572788] (imputed)	N
1337	chr3	98586308	98586309	rs2454684	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHL1	5,364 Icelandic ancestry individuals	NA	3q12.1		rs2454684-C	0.4988	7E-13		0.134881	[0.098-0.172] unit decrease	Illumina [7506463] (imputed)	N
1337	chr3	98589036	98589037	rs9820384	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CHL1	5,357 Icelandic ancestry individuals	NA	3q12.1		rs9820384-T	0.4957	7E-13		0.133642	[0.097-0.17] unit increase	Illumina [7506463] (imputed)	N
1337	chr3	98605006	98605007	rs12487717	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCBLD2	5,364 Icelandic ancestry individuals	NA	3q12.1		rs12487717-A	0.01185	2E-27		0.932976	[0.76-1.1] unit decrease	Illumina [7506463] (imputed)	N
1337	chr3	98605006	98605007	rs12487717	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	NR	rs12487717-A	0.015	1E-23	(Discoidin, CUB and LCCL domain-containing protein 2, DCBLD2.9338.2.3)	1.04	[0.84-1.24] unit decrease	Affymetrix [10572788] (imputed)	N
1337	chr3	98624839	98624840	rs13074787	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ST3GAL6	5,364 Icelandic ancestry individuals	NA	3q12.1		rs13074787-G	0.07505	8E-82		0.675776	[0.61-0.74] unit increase	Illumina [7506463] (imputed)	N
1337	chr3	98676520	98676521	rs9289696	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DCBLD2	5,364 Icelandic ancestry individuals	NA	3q12.1		rs9289696-A	0.06542	3E-28		0.410289	[0.34-0.48] unit decrease	Illumina [7506463] (imputed)	N
1337	chr3	98677385	98677386	rs9859042	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q12.1	NR	rs9859042-G	0.93578125	9E-328	(ST3GAL6, 6947_4_3)	1.7495148	[1.67-1.83] unit increase	Illumina [> 1000000] (imputed)	N
1337	chr3	98677385	98677386	rs9859042	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q12.1	NR	rs9859042-G	0.93578125	4E-18	(DCBLD2, 9338_2_3)	0.42089927	[0.33-0.52] unit increase	Illumina [> 1000000] (imputed)	N
1337	chr3	98678172	98678173	rs9864010	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q12.1	DCBLD2	rs9864010-A	0.055	7E-31	(Discoidin, CUB and LCCL domain-containing protein 2, DCBLD2.9338.2.3)	0.62	[0.52-0.72] unit decrease	Affymetrix [10572788] (imputed)	N
1337	chr3	98688021	98688022	rs1481631	20351715	Liu Y	2010-03-30	Mol Psychiatry	Meta-analysis of genome-wide association data of bipolar disorder and major depressive disorder.	Major depressive disorder	1,695 cases, 1,761 controls	NA	3q12.1	intergenic	rs1481631-?	NR	2E-6				Perlegen [1893617] (imputed)	N
1337	chr3	98690591	98690592	rs2470750	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q12.1	DCBLD2, COL8A1	rs2470750-A	0.61	2E-11		6.7	z-score increase	Affymetrix [4311822] (imputed)	N
1338	chr3	98697388	98697389	rs2062059	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q12.1		rs2062059-G	0.38	1E-11		6.8	z score increase	Affymetrix [9061022] (imputed)	N
1338	chr3	98697388	98697389	rs2062059	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q12.1	NR	rs2062059-G	0.3941	3E-13				NR [9056863] (imputed)	N
1338	chr3	98715822	98715823	rs7633464	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q12.1	AC091212.1	rs7633464-A	0.4786	1E-20		0.0175	[0.014-0.021] unit increase	Affymetrix [18391927] (imputed)	N
1338	chr3	98736152	98736153	rs958650	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q12.1	NR	rs958650-G	0.769586	7E-9		0.0055406	[0.0036-0.0075] unit increase	Affymetrix [16582909] (imputed)	N
1338	chr3	98736152	98736153	rs958650	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q12.1	NR	rs958650-G	0.769586	3E-6		0.00486327	[0.0027-0.0071] unit increase	Affymetrix [16582965] (imputed)	N
1338	chr3	98764041	98764042	rs565219167	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q12.1	CTD-2021J15.1	rs565219167-T	0.9983	4E-6		1.709	[0.98-2.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1338	chr3	98790766	98790767	rs1404100	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3q12.1	intergenic	rs1404100-?	NR	2E-6		0.158	[0.087-0.229] unit decrease	Illumina [at least 13000000] (imputed)	N
1338	chr3	98806781	98806782	rs1404098	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1	DCBLD2, MIR548G	rs1404098-A	0.74	1E-7	(EA)	18.85	[11.87-25.83] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1338	chr3	98806781	98806782	rs1404098	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1	DCBLD2, MIR548G	rs1404098-A	0.71	5E-9		15.93	[10.58-21.28] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1338	chr3	98806781	98806782	rs1404098	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1		rs1404098-?	NR	6E-8		12.95	[8.29-17.61] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1338	chr3	98815639	98815640	rs6778584	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1		rs6778584-?	NR	7E-9		15.77	[10.44-21.1] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
1338	chr3	98815639	98815640	rs6778584	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1	DCBLD2, MIR548G	rs6778584-T	0.7	5E-8		12.98	[8.33-17.63] ml increase	Affymetrix, Illumina [10900000] (imputed)	N
1338	chr3	98822049	98822050	rs12497779	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q12.1	DCBLD2	rs12497779-T	0.2334	2E-30		0.0319	[0.026-0.037] unit decrease	Affymetrix [19819130] (imputed)	N
1338	chr3	98822049	98822050	rs12497779	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q12.1	DCBLD2	rs12497779-T	0.2334	4E-27		0.0298	[0.024-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1338	chr3	98822049	98822050	rs12497779	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q12.1		rs12497779-?	NR	3E-35				NR [~ 8900000] (imputed)	N
1339	chr3	98833074	98833075	rs72932726	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	3q12.1	DCBLD2	rs72932726-A	0.11	3E-7	(Right HG area)	13.74	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1339	chr3	98845869	98845870	rs146612591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q12.1		rs146612591-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1339	chr3	98857072	98857073	rs9880373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q12.1		rs9880373-A	0.25	5E-19		8.91	z score increase	Affymetrix [9061022] (imputed)	N
1339	chr3	98857072	98857073	rs9880373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q12.1	NR	rs9880373-A	0.2157	4E-10				NR [9056863] (imputed)	N
1339	chr3	98857072	98857073	rs9880373	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q12.1		rs9880373-?	NR	1E-10				NR [9705931] (imputed)	N
1339	chr3	98896241	98896242	rs9824877	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3q12.1	NR	rs9824877-G		1E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
1339	chr3	98896241	98896242	rs9824877	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q12.1	CPOX, ST3GAL6, DCBLD2, COL8A1, CMSS1, FILIP1L, TBC1D23, NIT2, TOMM70A, LNP1, TMEM45A, GPR128, TFG, ABI3BP	rs9824877-?		5E-25				Affymetrix, Illumina [NR] (imputed)	N
1339	chr3	98896241	98896242	rs9824877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q12.1		rs9824877-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1339	chr3	98924903	98924904	rs9831278	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3q12.1	LINC00973	rs9831278-C	NR	3E-8	(Unclassified Marinilabiliaceae)	1.16	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1339	chr3	98924903	98924904	rs9831278	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3q12.1	LINC00973	rs9831278-C	NR	3E-8	(Marinilabiliaceae family)	1.16	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1339	chr3	98943478	98943479	rs13076500	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3q12.1	DCBLD2, MIR548G	rs13076500-C	0.46	2E-17		0.0074	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1340	chr3	98972834	98972835	rs4928176	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3q12.1	MIR548G	rs4928176-G	0.41	5E-15		0.0072	[0.0054-0.009] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1340	chr3	98981049	98981050	rs2203949	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q12.1	DCBLD2, MIR548G	rs2203949-?	NR	1E-13		0.037613913	[0.028-0.048] unit increase	Illumina [27896057] (imputed)	N
1340	chr3	99023223	99023224	rs13081990	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs13081990-?	NR	3E-11				Affymetrix [~ 8270000] (imputed)	N
1340	chr3	99060453	99060454	rs7652907	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q12.1	DCBLD2	rs7652907-?	NR	5E-6	(glycerol-3-phosphate)	0.2964438	[0.17-0.42] unit increase	Affymetrix [at least 2500000] (imputed)	N
1340	chr3	99064219	99064220	rs2623384	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	3q12.1	COL8A1	rs2623384-G	0.39	9E-6	(Left superior frontal gyrus)	724.0	[NR] unit decrease	Affymetrix [517946]	N
1340	chr3	99073114	99073115	rs2929439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q12.1	AC078828.1	rs2929439-C	NR	4E-10		0.020344	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1340	chr3	99088010	99088011	rs10935768	31219225	Young KA	2019-06-20	Obesity (Silver Spring)	Genome-Wide Association Study Identifies Loci for Liver Enzyme Concentrations in Mexican Americans: The GUARDIAN Consortium.	Alanine aminotransferase levels	3,595 Mexican American ancestry individuals	NA	3q12.1	intergenic	rs10935768-?	NR	4E-6				Illumina [659211]	N
1341	chr3	99095895	99095896	rs2200019	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic cup area	24,493 European ancestry individuals	NA	3q12.1	COL8A1	rs2200019-T	0.307	7E-8		0.013	[0.0091-0.0169] mm2 increase	Affymetrix, Illumina [11830838] (imputed)	N
1341	chr3	99095895	99095896	rs2200019	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs2200019-?	NR	8E-13				Affymetrix [~ 8270000] (imputed)	N
1341	chr3	99117308	99117309	rs2700603	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Precuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q12.1	NR	rs2700603-?		4E-6				Illumina [4322238] (imputed)	N
1341	chr3	99120655	99120656	rs2623365	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Vertical cup-disc ratio	25,180 European ancestry individuals	NA	3q12.1	COL8A1	rs2623365-G	0.311	8E-10		0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [11901698] (imputed)	N
1341	chr3	99131754	99131755	rs2623325	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	3q12.1	COL8A1	rs2623325-A	0.11	4E-8		0.025	[0.015-0.035] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr3	99131754	99131755	rs2623325	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic cup area	15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals	2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals	3q12.1	COL8A1	rs2623325-A	0.11	2E-8	(EA)	0.039	[0.025-0.053] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr3	99131754	99131755	rs2623325	25241763	Springelkamp H	2014-09-22	Nat Commun	Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process.	Vertical cup-disc ratio	18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals	2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals	3q12.1	COL8A1	rs2623325-A	NR	7E-10		0.016	[0.010-0.022] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1341	chr3	99156868	99156869	rs2880364	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3q12.1	DCBLD2, MIR548G	rs2880364-G	0.64	8E-22		0.0086	NR unit decrease	Affymetrix, Illumina [8002429] (imputed)	N
1341	chr3	99156960	99156961	rs114825396	34338756	Ahlberg G	2021-07-29	Eur Heart J	Genome-wide association study identifies 18 novel loci associated with left atrial volume and function.	Left atrial minimum volume	35,658 British ancestry individuals	NA	3q12.1		rs114825396-?	NR	1E-8		1.17	[0.77-1.57] mL/m2 decrease	Affymetrix [10600000] (imputed)	N
1341	chr3	99159146	99159147	rs6804624	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3q12.1	MIR548G	rs6804624-T	0.69	9E-14		0.00735	[0.0054-0.0093] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1341	chr3	99159146	99159147	rs6804624	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	3q12.1	COL8A1	rs6804624-C	NR	9E-12		0.008	[0.006-0.01] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99159146	99159147	rs6804624	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Vertical cup-disc ratio	21,768 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	8,168 Asian ancestry individuals	3q12.1	COL8A1	rs6804624-C	NR	2E-9	(EA)	0.009	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99159146	99159147	rs6804624	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	3q12.1	COL8A1	rs6804624-C	NR	6E-6	(EA)	0.012	[0.0061-0.0179] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99159146	99159147	rs6804624	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic cup area	20,353 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,333 Asian ancestry individuals	3q12.1	COL8A1	rs6804624-C	NR	2E-8		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99159240	99159241	rs73138351	31832568	Gawrieh S	2019-11-03	Hepatol Commun	A Pilot Genome-Wide Analysis Study Identifies Loci Associated With Response to Obeticholic Acid in Patients With NASH.	Fibrosis improvement in nonalcoholic steatohepatitis	38 European ancestry cases, 103 European ancestry controls	NA	3q12.1	Intergenic	rs73138351-?	NR	5E-6				Illumina [5417859] (imputed)	N
1341	chr3	99161021	99161022	rs1997404	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3q12.1	COL8A1	rs1997404-G		9E-9		0.024	[0.016-0.032] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99161021	99161022	rs1997404	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3q12.1	COL8A1	rs1997404-G		4E-7	(EA)	0.024	[0.014-0.034] unit increase	Affymetrix, Illumina [~ 8000000] (imputed)	N
1341	chr3	99165972	99165973	rs6770131	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Optic disc area	24,509 European ancestry individuals	NA	3q12.1	COL8A1	rs6770131-C	0.292	4E-8		0.024	[0.016-0.032] mm2 increase	Affymetrix, Illumina [11764957] (imputed)	N
1341	chr3	99167106	99167107	rs2670321	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	RR interval (heart rate)	2,325 European ancestry individuals	NA	3q12.1	intergenic	rs2670321-C	0.27	2E-6		0.16	[0.10-0.22] unit decrease	Illumina [~ 318327]	N
1341	chr3	99171867	99171868	rs151208372	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3q12.1	NR	rs151208372-?	NR	5E-8		0.0901	[0.058-0.123] unit increase	Illumina [at least 560000] (imputed)	N
1341	chr3	99171867	99171868	rs151208372	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	3q12.1	DCBLD2, COL8A1	rs151208372-?	NR	5E-8		1.094	[1.059-1.130]	Illumina [13754664] (imputed)	N
1341	chr3	99180667	99180668	rs140647181	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	3q12.1	COL8A1	rs140647181-?	NR	1E-11	(EA)	1.59		Illumina [12023830] (imputed)	N
1341	chr3	99199551	99199552	rs10049046	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.1	rs10049046-T	NR	6E-9		0.0173125	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
1341	chr3	99219234	99219235	rs13101237	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs13101237-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1342	chr3	99224543	99224544	rs1877569	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q12.1	NR	rs1877569-A	0.1922	5E-8		0.012	[0.0077-0.0163] unit increase	NR [~ 27400000] (imputed)	N
1342	chr3	99229168	99229169	rs58717744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs58717744-A	NR	3E-8		0.0178628	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1342	chr3	99229168	99229169	rs58717744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs58717744-A	NR	3E-8		0.0179696	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1342	chr3	99230242	99230243	rs2700588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs2700588-G	NR	7E-14		0.0233597	[0.017-0.029] unit increase	Affymetrix [321114] (imputed)	N
1342	chr3	99230242	99230243	rs2700588	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs2700588-G	NR	9E-9		0.0179796	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
1342	chr3	99242096	99242097	rs12490079	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q12.1	NR	rs12490079-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1342	chr3	99242096	99242097	rs12490079	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs12490079-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1342	chr3	99258201	99258202	rs4928200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs4928200-G	NR	6E-13		0.026015	[0.019-0.033] unit increase	Affymetrix [321114] (imputed)	N
1342	chr3	99258201	99258202	rs4928200	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q12.1	RP11-779P15.2	rs4928200-G	NR	3E-8		0.0201672	[0.013-0.027] unit increase	Affymetrix [321169] (imputed)	N
1342	chr3	99266336	99266337	rs13070584	20686651	Gudbjartsson DF	2010-07-29	PLoS Genet	Association of variants at UMOD with chronic kidney disease and kidney stones-role of age and comorbid diseases.	Chronic kidney disease and serum creatinine levels	1,689 European ancestry cases, 37,076 European ancestry controls	1,972 European ancestry cases, 6,125 European ancestry controls	3q12.1	NR	rs13070584-T	0.05	2E-6	(CKD)	1.42	[1.23-1.65]	Illumina [~ 2500000] (imputed)	N
1342	chr3	99269749	99269750	rs1513304	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q12.1	RP11-779P15.2	rs1513304-C	NR	4E-8		0.018562	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1342	chr3	99271992	99271993	rs2089983	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q12.1		rs2089983-?	NR	5E-31				NR [~ 8900000] (imputed)	N
1342	chr3	99294990	99294991	rs3914294	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q12.1		rs3914294-T	NR	1E-33		0.0158	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1342	chr3	99299412	99299413	rs7625645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q12.1	RP11-201E8.1	rs7625645-G	NR	2E-10		0.0204467	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1342	chr3	99328144	99328145	rs1849496	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q12.1		rs1849496-?	NR	8E-15				NR [~ 8900000] (imputed)	N
1342	chr3	99347670	99347671	rs60550942	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q12.1		rs60550942-C	0.363491	7E-13		0.0149502	[0.011-0.019] unit increase	Illumina [13479295] (imputed)	N
1342	chr3	99347670	99347671	rs60550942	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q12.1	MIR548G	rs60550942-?	NR	2E-16		0.024245335	[0.018-0.03] unit increase	Illumina [27896057] (imputed)	N
1343	chr3	99359367	99359368	rs80217917	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1	DCBLD2, MIR548G	rs80217917-T	0.89	3E-6	(EA)	0.003	[0.0016-0.0044] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1343	chr3	99359367	99359368	rs80217917	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		3q12.1	DCBLD2, MIR548G	rs80217917-T	0.88	3E-8		0.003	[0.002-0.004] unit decrease	Affymetrix, Illumina [10900000] (imputed)	N
1343	chr3	99396271	99396272	rs13095226	20385826	Neale BM	2010-04-12	Proc Natl Acad Sci U S A	Genome-wide association study of advanced age-related macular degeneration identifies a role of the hepatic lipase gene (LIPC).	Age-related macular degeneration	979 cases, 1,709 controls	868 European ancestry cases, 410 European ancestry controls, 4,921 cases, 3,824 controls	3q12.1	COL8A1	rs13095226-C	0.12	3E-6		1.24	[1.13-1.35]	Affymetrix [632932]	N
1343	chr3	99401709	99401710	rs11298677	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q12.1	NR	rs11298677-T	0.6142	5E-9	(EA)	0.0373	[0.025-0.05] unit decrease	Illumina [~ 11800000] (imputed)	N
1343	chr3	99419852	99419853	rs55975637	26691988	Fritsche LG	2015-12-21	Nat Genet	A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.	Advanced age-related macular degeneration	16,144 European ancestry cases, 17,832 European ancestry controls	473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls	3q12.1	COL8A1	rs55975637-?	NR	1E-8	(EA)	1.15		Illumina [12023830] (imputed)	N
1343	chr3	99420191	99420192	rs1610265	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q12.1	MIR548G	rs1610265-T	0.0769	9E-18		0.0379	[0.029-0.047] unit decrease	Affymetrix [19819130] (imputed)	N
1343	chr3	99420191	99420192	rs1610265	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q12.1	MIR548G	rs1610265-T	0.0769	4E-12		0.0305	[0.022-0.039] unit decrease	Affymetrix [19819130] (imputed)	N
1343	chr3	99440555	99440556	rs73860416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.1	NR	rs73860416-A	0.01045	3E-9	(SERPINA1)	2.922	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr3	99440555	99440556	rs73860416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.1	NR	rs73860416-A	0.01045	2E-8	(ANP32A)	0.09296	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr3	99440555	99440556	rs73860416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.1	NR	rs73860416-A	0.01045	2E-12	(ORM2)	0.2116	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr3	99440555	99440556	rs73860416	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.1	NR	rs73860416-A	0.01045	1E-8	(SERPINF1)	0.02397	NR unit increase	Illumina [1671387] (imputed)	N
1343	chr3	99442779	99442780	rs4928143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q12.1	NR	rs4928143-?	NR	2E-12				Affymetrix [~ 8270000] (imputed)	N
1343	chr3	99442779	99442780	rs4928143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs4928143-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1343	chr3	99442779	99442780	rs4928143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q12.1		rs4928143-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1343	chr3	99471307	99471308	rs792841	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.1	COL8A1	rs792841-G	NR	2E-10		0.0186482	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1343	chr3	99481538	99481539	rs13081855	23455636	Fritsche LG	2013-03-03	Nat Genet	Seven new loci associated with age-related macular degeneration.	Age-related macular degeneration	6,713 European ancestry cases, 48,402 European ancestry contols, 110 Southern Indian ancestry cases, 119 Southern Indian ancestry controls, 827 Japanese ancestry cases, 3,323 Japanese ancestry controls	9,070 European ancestry cases, 7,683 European ancestry contols, 461 East Asian ancestry cases, 547 East Asian ancestry controls	3q12.1	FILIP1L, COL8A1	rs13081855-T	0.1	4E-13		1.23	[1.17-1.29]	Affymetrix, Illumina [2442884] (imputed)	N
1344	chr3	99493164	99493165	rs793486	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q12.1	COL8A1	rs793486-C	NR	2E-8		0.0160528	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
1344	chr3	99495421	99495422	rs793487	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	4,680 European ancestry individuals	3,566 European ancestry individuals	3q12.1		rs793487-A	0.420631488	2E-8				Illumina [7417619] (imputed)	N
1344	chr3	99503727	99503728	rs1038294	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	3q12.1	COL8A1	rs1038294-G	0.83	4E-7		1.2345679	[NR]	Illumina [803202]	N
1344	chr3	99515749	99515750	rs1287283	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.1	COL8A1	rs1287283-A	NR	8E-11		0.0201812	[0.014-0.026] unit increase	Affymetrix [321788] (imputed)	N
1344	chr3	99525630	99525631	rs793456	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q12.1	RP11-383I23.2	rs793456-G	NR	4E-9		0.0184018	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
1344	chr3	99525630	99525631	rs793456	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs793456-?	NR	3E-22				Affymetrix [~ 8270000] (imputed)	N
1344	chr3	99525630	99525631	rs793456	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q12.1	NA	rs793456-A	0.6045	4E-9		0.0106	[0.0071-0.0141] unit decrease	NR [~ 27400000] (imputed)	N
1344	chr3	99543763	99543764	rs793475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q12.1	CMSS1	rs793475-A	NR	2E-12		0.0202824	[0.015-0.026] unit increase	Affymetrix [321114] (imputed)	N
1344	chr3	99543763	99543764	rs793475	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q12.1	CMSS1	rs793475-A	NR	5E-12		0.0200262	[0.014-0.026] unit increase	Affymetrix [321169] (imputed)	N
1344	chr3	99556795	99556796	rs7635633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q12.1		rs7635633-?	NR	4E-19				NR [~ 8900000] (imputed)	N
1344	chr3	99573528	99573528	rs35225638	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q12.1	CMSS1	rs35225638-T	0.3382	5E-12		0.0138	[0.0099-0.0177] unit decrease	Affymetrix [18391927] (imputed)	N
1344	chr3	99592595	99592596	rs813218	22863734	Ludwig KU	2012-08-05	Nat Genet	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.	Orofacial clefts	Up to 666 European ancestry trios, 399 European ancestry cases, 1,318 European ancestry controls	up to 795 East Asian ancestry trios	3q12.1	NR	rs813218-?	NR	1E-6	(Meta-All, NSCL/P)			NR [497084]	N
1344	chr3	99595227	99595227	rs147852464	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs147852464-TGGTGGGCC	NR	3E-8		0.0338502	[0.022-0.046] unit increase	Affymetrix [127266] (imputed)	N
1345	chr3	99633623	99633624	rs55881709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q12.1		rs55881709-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1345	chr3	99637782	99637783	rs793439	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs793439-A	NR	1E-8		0.0176175	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1345	chr3	99647849	99647850	rs1688766	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	3q12.1	COL8A1	rs1688766-G	0.83	5E-7		1.2345679	[NR]	Illumina [803202]	N
1345	chr3	99657921	99657922	rs4577503	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q12.1		rs4577503-G	0.41	7E-11				NR [NR] (imputed)	N
1345	chr3	99657921	99657922	rs4577503	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q12.1		rs4577503-G	0.41	3E-9		0.009	% increase	NR [NR] (imputed)	N
1345	chr3	99688975	99688976	rs7650727	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs7650727-C	NR	5E-8		0.0169945	[0.011-0.023] unit increase	Affymetrix [323858] (imputed)	N
1345	chr3	99691521	99691522	rs68092024	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	3q12.1	COL8A1	rs68092024-?	NR	5E-8		1.3513513	[1.19-1.52] (GENEVA cohort)	Illumina [6090031] (imputed)	N
1345	chr3	99701133	99701134	rs7616988	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	3q12.1	NR	rs7616988-?	NR	3E-6	(Asian)	1.5625	[1.32-1.85]	Illumina [6090031] (imputed)	N
1345	chr3	99702229	99702235	rs201354184	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q12.1		rs201354184-A	NR	9E-10		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1345	chr3	99723579	99723580	rs9833888	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3q12.1		rs9833888-T	NR	3E-10		1.04	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1345	chr3	99723579	99723580	rs9833888	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q12.1	CMSS1, FILIP1L	rs9833888-T	0.22	5E-10	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1345	chr3	99732563	99732564	rs7610486	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3q12.1	FILIP1L	rs7610486-A	0.77	2E-8		0.01	unit increase	Affymetrix [8928767] (imputed)	N
1346	chr3	99791549	99791550	rs7431827	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	3q12.1	NR	rs7431827-C	0.1804	2E-7		0.0123	[0.0078-0.0168] unit increase	NR [~ 27400000] (imputed)	N
1346	chr3	99805726	99805727	rs4928152	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs4928152-T	NR	4E-8		0.032766	[0.021-0.044] unit increase	Affymetrix [323858] (imputed)	N
1346	chr3	99818095	99818096	rs73859922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs73859922-A	NR	5E-10		0.0253623	[0.017-0.033] unit increase	Affymetrix [323858] (imputed)	N
1346	chr3	99818095	99818096	rs73859922	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3q12.1	CMSS1, FILIP1L	rs73859922-A	NR	3E-10		0.0257794	[0.018-0.034] unit increase	Affymetrix [127266] (imputed)	N
1346	chr3	99821678	99821679	rs56233205	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q12.1	C3orf26	rs56233205-A	0.8232	6E-13		0.1876	[0.14-0.24] mmHg increase	Affymetrix [NR] (imputed)	N
1346	chr3	99824684	99824685	rs9837602	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q12.1	NR	rs9837602-A	0.2261	1E-9	(EA)	0.0448	[0.03-0.059] unit increase	Illumina [~ 11800000] (imputed)	N
1346	chr3	99836721	99836722	rs9832134	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3q12.1		rs9832134-C	NR	1E-7		1.0706638	[1.04-1.1]	Affymetrix [7846216] (imputed)	N
1346	chr3	99839105	99839106	rs9860290	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q12.1	CMSS1	rs9860290-A	0.2064	1E-13		0.159	[0.12-0.2] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1346	chr3	99844292	99844293	rs9811920	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q12.1	CMSS1	rs9811920-A	NR	3E-9		0.0169976	[0.011-0.023] unit increase	Affymetrix [321016] (imputed)	N
1346	chr3	99844292	99844293	rs9811920	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3q12.1	FILIP1L, MGC4308, LOC648640, DOC1, C3ORF26, TBC1D23, COL8A1	rs9811920-A	0.3975	5E-11		0.0803	[0.056-0.104] unit increase	Illumina [2500000] (imputed)	N
1346	chr3	99868103	99868104	rs9289981	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Breast cancer	17,881 European ancestry cases, 410,350 European ancestry controls	NA	3q12.1		rs9289981-T	NR	4E-10		1.0731916	NR	Affymetrix [7846216] (imputed)	N
1346	chr3	99870298	99870299	rs9865713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3q12.1	CMSS1	rs9865713-A	NR	4E-9		0.018861	[0.013-0.025] unit increase	Affymetrix [323858] (imputed)	N
1346	chr3	99870298	99870299	rs9865713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3q12.1	CMSS1	rs9865713-A	NR	3E-9		0.0191376	[0.013-0.025] unit increase	Affymetrix [127266] (imputed)	N
1346	chr3	99870298	99870299	rs9865713	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3q12.1	CMSS1	rs9865713-A	NR	3E-8		0.017761	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
1346	chr3	99870298	99870299	rs9865713	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q12.1	NR	rs9865713-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1347	chr3	99886661	99886662	rs11537816	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q12.1		rs11537816-A	0.1824	1E-16		0.16271847	[0.12-0.2] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1347	chr3	99904782	99904783	rs12629505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.1	TMEM30C	rs12629505-A	NR	2E-8		0.0167479	[0.011-0.023] unit decrease	Affymetrix [321788] (imputed)	N
1347	chr3	99906750	99906751	rs7623587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.1	TMEM30C	rs7623587-C	NR	2E-10		0.0186551	[0.013-0.024] unit increase	Affymetrix [321788] (imputed)	N
1347	chr3	99914828	99914829	rs80277094	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Retinal detachment or retinal break	3,977 British ancestry cases, 360,233 British ancestry controls	NA	3q12.1	TMEM30C	rs80277094-?	0.18700000000000006	2E-6		1.1430026	[1.08-1.21]	Affymetrix, Illumina [7701827] (imputed)	N
1347	chr3	99920260	99920261	rs6414385	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q12.1	TMEM30C	rs6414385-T	NR	2E-8		0.0179221	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1347	chr3	99920260	99920261	rs6414385	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q12.1	NR	rs6414385-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1347	chr3	99924001	99924002	rs113663609	31763980	Xiong Z	2019-11-25	Elife	Novel genetic loci affecting facial shape variation in humans.	Facial morphology	10,115 European ancestry individuals	NA	3q12.1	CMSS1	rs113663609-A	0.14	3E-8	(right endocanthion-right cheilion distance)	0.117	NR unit decrease	Illumina [7029494] (imputed)	N
1347	chr3	99956555	99956556	rs12486865	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q12.1	TBC1D23, C3orf26	rs12486865-G	0.72	7E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1348	chr3	100046611	100046612	rs6800780	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3q12.2	intergenic	rs6800780-?	NR	9E-6		0.119	[0.062-0.176] unit increase	Illumina [at least 13000000] (imputed)	N
1348	chr3	100056615	100056616	rs34745815	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3q12.2	NR	rs34745815-G		2E-8		0.12	[0.081-0.159] unit increase	NR [NR]	N
1348	chr3	100058465	100058466	rs10511179	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (language) (slope of z-scores)	1,145 European ancestry individuals	NA	3q12.2	NIT2	rs10511179-G	0.54	6E-7		0.19	unit increase	Illumina [5600000] (imputed)	N
1348	chr3	100064901	100064902	rs2289506	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with visuospatial domain impairment	Up to 497 European ancestry cases, 3,447 European ancestry controls	NA	3q12.2	NR	rs2289506-T	0.34	3E-7		1.61	[1.43-1.79]	NR [up to 6398204] (imputed)	N
1349	chr3	100220306	100220307	rs4132537	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q12.2	TMEM45A	rs4132537-A	0.5208	7E-8		0.0093	[0.0058-0.0128] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1349	chr3	100220306	100220307	rs4132537	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q12.2	NR	rs4132537-G	NR	3E-11		0.0167	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1350	chr3	100281435	100281436	rs145622189	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.2	NR	rs145622189-A	0.01568	2E-11	(SCARB2)	0.006682	NR unit increase	Illumina [1671387] (imputed)	N
1350	chr3	100346656	100346657	rs115566786	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	3q12.2	NR	rs115566786-G	0.99	2E-6		1.89	[NR]	Affymetrix [87696888] (imputed)	N
1351	chr3	100476712	100476713	rs9823506	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q12.2	ABI3BP	rs9823506-?	NR	6E-8				Affymetrix [786195]	N
1351	chr3	100478314	100478315	rs971230	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q12.2	Intergenic	rs971230-C	0.7475	4E-8	(MTAG)	0.0083	[0.0054-0.0112] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1352	chr3	100536283	100536284	rs12632235	26365420	Mbarek H	2015-09-14	Am J Med Genet B Neuropsychiatr Genet	The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.	Alcohol dependence	1,374 European ancestry cases and 6,468 European ancestry controls from 7,694 twin pairs	NA	3q12.2	ABI3BP	rs12632235-T	0.01	5E-6		2.173913	[1.86-2.49]	Affymetrix, Illumina, Perlegen [6464174] (imputed)	N
1352	chr3	100559958	100559959	rs9828061	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	3q12.2	ABI3BP	rs9828061-?	NR	7E-12		0.078	[0.056-0.101] unit increase	Illumina [12039492] (imputed)	N
1352	chr3	100590354	100590355	rs189757960	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3q12.2	ABI3BP	rs189757960-C	1.0	2E-6	(AA)	158.252	NR unit increase	Illumina [NR] (imputed)	N
1352	chr3	100590821	100590822	rs9848726	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	3q12.2	TMEM45A	rs9848726-A		1E-6		0.075	[NR] unit increase	Illumina [at least 233546] (imputed)	N
1352	chr3	100590924	100590925	rs9833094	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	3q12.2	ABI3BP	rs9833094-T	0.1683	5E-7	(East Asian)	2.95	[1.88-4.64]	Affymetrix [up to 644046]	N
1352	chr3	100590924	100590925	rs9833094	24236485	Cornejo-Garcia JA	2013-11-01	Pharmacogenomics	Genome-wide association study in NSAID-induced acute urticaria/angioedema in Spanish and Han Chinese populations.	Acute urticaria and angioedema (non-steroidal anti-inflammatory drug-induced)	112 European ancestry cases, 124 European ancestry controls, 120 Han Chinese ancestry cases, 101 Han Chinese ancestry controls	NA	3q12.2	ABI3BP	rs9833094-?		2E-6				Affymetrix [up to 644046]	N
1352	chr3	100599948	100599949	rs1836988	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3q12.2	ABI3BP	rs1836988-C	NR	3E-6		0.10417816	[0.06-0.148] unit increase	Affymetrix [9576485] (imputed)	N
1352	chr3	100613778	100613779	rs72928364	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3q12.2	ABI3BP	rs72928364-?	NR	1E-6		0.18	[0.11-0.25] unit decrease	Illumina [at least 13000000] (imputed)	N
1352	chr3	100625702	100625703	rs17398137	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (multi-trait analysis)	90,939 European ancestry individuals	NA	3q12.2	ABI3BP	rs17398137-G	0.82	9E-12		0.0076	NR unit increase	Affymetrix, Illumina [8002429] (imputed)	N
1352	chr3	100625702	100625703	rs17398137	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3q12.2	ABI3BP	rs17398137-A	0.18	4E-26		0.03	unit decrease	Affymetrix [8928767] (imputed)	N
1352	chr3	100637870	100637871	rs9860250	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	3q12.2	ABI3BP	rs9860250-G	0.18	5E-7	(EA)	0.033	[0.019-0.047] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1352	chr3	100637870	100637871	rs9860250	25631615	Springelkamp H	2015-01-28	Genet Epidemiol	Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology.	Optic disc area	15,117 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,405 Chinese ancestry individuals, 2,305 Malay ancestry individuals, 2,131 Indian ancestry individuals	NA	3q12.2	ABI3BP	rs9860250-G	0.18	2E-9		0.036	[0.024-0.048] unit decrease	Affymetrix, Illumina [2500000] (imputed)	N
1352	chr3	100648297	100648298	rs9827694	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3q12.2	ABI3BP	rs9827694-G	0.82	9E-10		0.00709	[0.0048-0.0094] unit increase	Affymetrix [at least 8002429] (imputed)	N
1352	chr3	100650928	100650929	rs9843102	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3q12.2	ABI3BP	rs9843102-A		5E-12		0.036	[0.026-0.046] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1352	chr3	100650928	100650929	rs9843102	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Optic disc area	20,373 European ancestry individuals, 2,131 Erasmus Rucphen (founder/genetic isolate) individuals	7,302 Asian ancestry individuals	3q12.2	ABI3BP	rs9843102-A		2E-9	(EA)	0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1352	chr3	100656638	100656639	rs115920108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.2	NR	rs115920108-A	0.01045	5E-10	(KRT2)	0.3703	NR unit increase	Illumina [1671387] (imputed)	N
1352	chr3	100656638	100656639	rs115920108	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.2	NR	rs115920108-A	0.01045	2E-11	(KRT10)	0.9259	NR unit increase	Illumina [1671387] (imputed)	N
1353	chr3	100682571	100682572	rs532797767	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q12.2	NR	rs532797767-C	0.983435	6E-10		0.0222402	[0.014-0.03] unit increase	Affymetrix [16582909] (imputed)	N
1353	chr3	100682571	100682572	rs532797767	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q12.2	NR	rs532797767-C	0.983435	8E-9		0.0242055	[0.015-0.033] unit increase	Affymetrix [16582965] (imputed)	N
1353	chr3	100703123	100703124	rs1449311	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Faecalibacterium)	1,068 Japanese ancestry individuals	NA	3q12.2	ABI3BP	rs1449311-T	0.48	3E-6	(female)	0.0739	[0.044-0.104] unit increase	Illumina [6380737] (imputed)	N
1353	chr3	100790866	100790867	rs1470632	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3q12.2	intergenic	rs1470632-C	NR	6E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1354	chr3	100797037	100797038	rs7646803	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals	NA	3q12.2	intergenic	rs7646803-?	NR	3E-6				Affymetrix, Illumina [2723488] (imputed)	N
1354	chr3	100893354	100893355	rs147711594	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3q12.2	NR	rs147711594-T	0.0212	3E-8		0.033799578	[0.022-0.046] unit decrease	Affymetrix [NR] (imputed)	N
1355	chr3	100930282	100930283	rs348872	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.3	snoU13	rs348872-C	NR	1E-9		0.0188145	[0.013-0.025] unit increase	Affymetrix [321788] (imputed)	N
1355	chr3	100938993	100938994	rs512553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.3	IMPG2	rs512553-G	NR	4E-8		0.019651	[0.013-0.027] unit increase	Affymetrix [321788] (imputed)	N
1355	chr3	100967919	100967920	rs546105	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q12.3		rs546105-G	NR	6E-12		0.0153	[0.011-0.02] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1355	chr3	101011009	101011010	rs13089552	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q12.3		rs13089552-C	NR	1E-12		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1355	chr3	101011009	101011010	rs13089552	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q12.3	IMPG2	rs13089552-C	NR	1E-8		0.0167346	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1355	chr3	101011009	101011010	rs13089552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.3	NR	rs13089552-C	0.417532	1E-16				Affymetrix, Illumina [20825802] (imputed)	N
1355	chr3	101023747	101023748	rs503734	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	3q12.3	IMPG2, SENP7	rs503734-A	0.513	3E-8		1.07	1.05-1.10	Illumina [9725440] (imputed)	N
1355	chr3	101023747	101023748	rs503734	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3q12.3	IMPG2, SENP7	rs503734-?		4E-7				Illumina [9560910] (imputed)	N
1355	chr3	101024520	101024521	rs522749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q12.3	IMPG2	rs522749-T	0.786849	8E-16		0.021612141	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr3	101040864	101040865	rs17487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q12.3	IMPG2	rs17487-G	0.785911	1E-14		0.0206492	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1355	chr3	101040864	101040865	rs17487	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q12.3	NR	rs17487-G	0.786188	6E-19		0.020805	[0.016-0.025] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q12.3		rs62280667-C	NR	4E-17		0.018	[0.014-0.022] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q12.3		rs62280667-C	NR	3E-9		0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q12.3	SENP7	rs62280667-C	NR	1E-8		0.0169997	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q12.3	SENP7	rs62280667-C	NR	5E-9		0.017401	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q12.3	SENP7	rs62280667-T	0.661291	2E-20		0.00227904	[0.0018-0.0028] unit increase	Affymetrix [13995440] (imputed)	N
1356	chr3	101084603	101084604	rs62280667	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q12.3	SENP7	rs62280667-T	0.66	2E-10		6.41	z-score increase	Affymetrix [4311822] (imputed)	N
1356	chr3	101109179	101109180	rs9861774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.3	NR	rs9861774-C	0.449254	9E-13				Affymetrix, Illumina [24588908] (imputed)	N
1356	chr3	101119940	101119941	rs36081020	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q12.3	SENP7	rs36081020-C	0.506742	2E-12		0.016852088	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr3	101122314	101122315	rs148396311	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q12.3	NR	rs148396311-G	0.01742	6E-9	(KRT2)	0.2479	NR unit increase	Illumina [1671387] (imputed)	N
1356	chr3	101134695	101134696	rs4683900	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	3q12.3	SENP7	rs4683900-T	0.73	8E-19		0.042	NR unit increase	Illumina [9591901] (imputed)	N
1356	chr3	101134695	101134696	rs4683900	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	3q12.3	SENP7	rs4683900-C	0.38	6E-44		0.016	unit increase	NR [NR]	N
1356	chr3	101136401	101136402	rs9859077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q12.3		rs9859077-C	NR	4E-10		0.0115	[0.008-0.015] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q12.3		rs9859077-G	0.66	5E-12				NR [NR] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q12.3		rs9859077-G	0.66	4E-11		0.01	% increase	NR [NR] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3q12.3		rs9859077-G	0.66	9E-6		0.009	U/L increase	NR [NR] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q12.3	SENP7	rs9859077-C	0.339502	5E-13		0.016838655	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.3	NR	rs9859077-C	0.316515	1E-15				Affymetrix, Illumina [24332387] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q12.3	NR	rs9859077-C	0.338704	3E-17		0.01652	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q12.3		rs9859077-?	NR	4E-13				NR [~ 8900000] (imputed)	N
1356	chr3	101136401	101136402	rs9859077	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q12.3		rs9859077-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1356	chr3	101139211	101139211	rs11379581	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q12.3	NR	rs11379581-I	0.400984	4E-15		0.016305	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1356	chr3	101161690	101161690	rs149727694	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q12.3	SENP7	rs149727694-CA	0.1359	2E-9		0.03102538	[0.021-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1356	chr3	101181249	101181250	rs145898511	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3q12.3	SENP7	rs145898511-T	0.9736	8E-6		0.0145	[0.008-0.021] unit increase	Affymetrix [~ 7740000] (imputed)	N
1356	chr3	101181249	101181250	rs145898511	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q12.3	TRMT10C	rs145898511-T	0.9742	4E-12		0.056338016	[0.04-0.072] unit increase	Affymetrix [~ 11515000] (imputed)	N
1357	chr3	101188397	101188398	rs6775091	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q12.3	NR	rs6775091-G	0.300797	5E-10		0.0495519	[0.034-0.065] unit decrease	Affymetrix [17914406] (imputed)	N
1357	chr3	101206162	101206163	rs142338804	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	3q12.3	TRMT10C	rs142338804-A	0.0229	1E-8		0.04241714	[0.028-0.057] unit decrease	Affymetrix [11514936] (imputed)	N
1357	chr3	101209970	101209970	rs199912447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q12.3		rs199912447-CT	NR	9E-12		0.0167	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1357	chr3	101215355	101215356	rs10936664	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q12.3	NR	rs10936664-C	0.62104	2E-20		0.017296	[0.014-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1357	chr3	101226951	101226952	rs10511190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q12.3	NR	rs10511190-G	NR	2E-9		0.0237	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1357	chr3	101227434	101227435	rs6806784	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	3q12.3	FAM172BP, SENP7	rs6806784-?	NR	4E-6		1.53	[1.28-1.83]	Affymetrix, Illumina [11480632] (imputed)	N
1357	chr3	101228364	101228365	rs56290975	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q12.3	SENP7	rs56290975-C	0.407	9E-13		0.1373	[0.1-0.175] mmHg increase	Affymetrix [NR] (imputed)	N
1357	chr3	101232092	101232093	rs55749605	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q12.3	SENP7	rs55749605-A	0.62	4E-8				NR [> 9500000] (imputed)	N
1357	chr3	101232092	101232093	rs55749605	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	3q12.3	SENP7	rs55749605-A	0.58	2E-8		0.037	[0.023-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1357	chr3	101233858	101233858	rs61482049	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q12.3	NR	rs61482049-ATTAC	NR	2E-9		0.0155	[0.01-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1357	chr3	101238258	101238259	rs16843947	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q12.3		rs16843947-A	0.5858	9E-15		0.1038524	[0.076-0.131] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q12.3		rs13088318-G	NR	8E-14		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q12.3		rs13088318-G	NR	9E-10		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q12.3	FAM172BP	rs13088318-A	0.6631	1E-17		0.0171	[0.013-0.021] unit decrease	Affymetrix [18391927] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.3	NR	rs13088318-G	0.300661	3E-21				Affymetrix, Illumina [24246363] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q12.3	NR	rs13088318-?	NR	9E-6		1.0204082	NR	Affymetrix [15688218] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q12.3	FAM172BP	rs13088318-A	0.66237	6E-15		0.0152577	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q12.3		rs13088318-?	NR	6E-16				NR [~ 8900000] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q12.3		rs13088318-?	NR	3E-17		0.0188206	[0.015-0.023] unit decrease	Affymetrix [20259828] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q12.3	FAM172BP, TRMT10C	rs13088318-A	0.62	9E-9		1.031	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1357	chr3	101242750	101242751	rs13088318	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	3q12.3	NR	rs13088318-G	0.34	3E-10		0.002	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1357	chr3	101246802	101246803	rs7610102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q12.3	FAM172BP	rs7610102-A	0.378181	3E-12		0.016566772	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1357	chr3	101267384	101267385	rs13062095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q12.3		rs13062095-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1357	chr3	101267384	101267385	rs13062095	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q12.3		rs13062095-?	NR	7E-20				NR [~ 8900000] (imputed)	N
1357	chr3	101267384	101267385	rs13062095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q12.3	intergenic	rs13062095-C	0.3362	5E-10		0.02361008	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1357	chr3	101267384	101267385	rs13062095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q12.3	intergenic	rs13062095-C	0.3362	6E-9		0.02197581	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr3	101267384	101267385	rs13062095	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q12.3	intergenic	rs13062095-C	0.3361	2E-9		0.02282836	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1357	chr3	101268079	101268080	rs11923667	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q12.3	TRMT10C	rs11923667-A	0.4097	2E-15		0.1222	[0.092-0.152] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1357	chr3	101274806	101274807	rs9825208	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q12.3		rs9825208-T	NR	1E-18		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1357	chr3	101281533	101281534	rs4618204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q12.3	TRMT10C	rs4618204-C	0.443552	2E-18		0.019424642	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr3	101281533	101281534	rs4618204	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q12.3	TRMT10C	rs4618204-C	0.443531	1E-17		0.019014962	[0.015-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1357	chr3	101281533	101281534	rs4618204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q12.3	NR	rs4618204-C	0.482631	2E-20				Affymetrix, Illumina [19872809] (imputed)	N
1357	chr3	101281533	101281534	rs4618204	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q12.3	NR	rs4618204-C	0.443836	1E-19		0.018183	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1357	chr3	101291956	101291956	rs552323817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q12.3		rs552323817-AACAC	NR	4E-8		0.0154	[0.0099-0.0209] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1357	chr3	101306098	101306098	rs531500623	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q12.3	NR	rs531500623-AAG	0.3262	9E-9		0.001398	[0.00092-0.00187] unit decrease	Affymetrix [NR] (imputed)	N
1357	chr3	101318317	101318318	rs17345786	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3q12.3	Intergenic	rs17345786-?	NR	9E-6		1.4318442	[NR]	Affymetrix [492217] (imputed)	N
1358	chr3	101331251	101331252	rs9843865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q12.3	NR	rs9843865-G	NR	3E-24		0.0368	[0.03-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1358	chr3	101349643	101349644	rs6441620	29739929	Visconti A	2018-05-08	Nat Commun	Genome-wide association study in 176,678 Europeans reveals genetic loci for tanning response to sun exposure.	Non-melanoma skin cancer	5,912 European ancestry cases, 181,740 European ancestry controls		3q12.3	NR	rs6441620-A	NR	5E-6		1.09089	[1.05094-1.13236]	Affymetrix [5734850] (imputed)	N
1358	chr3	101357105	101357106	rs78229644	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q12.3	PCNP, ZBTB11	rs78229644-?	NR	7E-10		0.030483777	[0.021-0.04] unit increase	Illumina [27896057] (imputed)	N
1358	chr3	101374225	101374226	rs34624546	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3q12.3		rs34624546-?	NR	4E-6		0.06775347	[0.039-0.096] unit increase	Illumina [9939936] (imputed)	N
1358	chr3	101404891	101404892	rs2303471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q12.3		rs2303471-A	0.183872	1E-9		0.0160927	[0.011-0.021] unit increase	Illumina [13479295] (imputed)	N
1358	chr3	101411977	101411978	rs112553552	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3q12.3	intergenic	rs112553552-?	NR	3E-6	(SF8)			Affymetrix [5476100] (imputed)	N
1358	chr3	101424457	101424458	rs11919389	34237774	COVID-19 Host Genetics Initiative	2021-07-08	Nature	Mapping the human genetic architecture of COVID-19.	SARS-CoV-2 infection	2,544 African ancestry cases, 31,176 African ancestry controls, 700 Middle Eastern ancestry cases, 13,360 Middle Eastern ancestry controls, 1,495 East Asian ancestry cases, 15,499 East Asian ancestry controls, 38,984 European ancestry cases, 1,644,784 European ancestry controls, 1,688 South Asian ancestry cases, 42,016 South Asian ancestry controls, 4,151 Hispanic or Latin American cases, 23,371 Hispanic or Latin American controls	NA	3q12.3		rs11919389-C	0.3515	3E-15		0.9413578	[0.9273018223094552-0.9556267949509863]	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1359	chr3	101474932	101474933	rs2318090	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3q12.3		rs2318090-?	NR	3E-7		0.07546429	[0.047-0.104] unit decrease	Illumina [9939936] (imputed)	N
1359	chr3	101476644	101476645	rs145072852	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q12.3		rs145072852-T	0.007	1E-13		0.8193044	[0.59-1.05] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1359	chr3	101564595	101564596	rs116265807	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	3q12.3		rs116265807-G	0.9226	7E-6	(East Asian)	1.14	[1.08-1.21]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1359	chr3	101569725	101569726	rs616597	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Ulcerative colitis	6,968 European ancestry cases, 20,464 European ancestry controls	10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls	3q12.3	NFKBIZ	rs616597-C	0.77	9E-6	(EA)	1.0701488		Affymetrix, Illumina [~ 9000000] (imputed)	N
1359	chr3	101576761	101576762	rs599849	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q12.3	NFKBIZ	rs599849-G	NR	1E-6		0.12239623	[0.074-0.171] unit increase	Illumina [> 6200000] (imputed)	N
1360	chr3	101600723	101600724	rs651907	26965516	Zeng C	2016-03-08	Gastroenterology	Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.	Colorectal cancer	4,508 East Asian ancestry cases, 16,588 East Asian ancestry controls	11,044 East Asian ancestry cases, 18,036 East Asian ancestry controls	3q12.3	NR	rs651907-C	0.54	9E-6		1.0752687	[1.04-1.1]	Affymetrix, Illumina [~ 4000000] (imputed)	N
1360	chr3	101613433	101613434	rs771578	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3q12.3		rs771578-?	NR	4E-6		0.06933079	[0.04-0.099] unit decrease	Illumina [9939936] (imputed)	N
1360	chr3	101615825	101615826	rs4683946	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriatic arthritis	1,946 European ancestry cases, 4,934 European ancestry controls	up to 2,883 European ancestry cases, up to 14,179 European ancestry controls	3q12.3	NFKBIZ	rs4683946-G	0.8029	9E-8		1.27	NR	Illumina [11532644] (imputed)	N
1360	chr3	101615825	101615826	rs4683946	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	3q12.3	NFKBIZ	rs4683946-G	0.8029	7E-8		1.16	NR	Illumina [up to 11532644] (imputed)	N
1360	chr3	101616981	101616982	rs771576	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)(opposite effect)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs771576-C		2E-8		1.06		NR [8016731] (imputed)	N
1360	chr3	101616981	101616982	rs771576	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs771576-C	NR	5E-9		1.06	NR	NR [8016731] (imputed)	N
1360	chr3	101633359	101633360	rs2312786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Psoriasis vulgaris	5,072 European ancestry cases, 478,102 European ancestry controls, 206 East Asian ancestry cases, 172,289 East Asian ancestry controls	NA	3q12.3		rs2312786-A	NR	1E-9		0.1403	[0.095-0.185] unit increase	Affymetrix, Illumina [25844455] (imputed)	N
1360	chr3	101661455	101661456	rs74482986	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q12.3	NR	rs74482986-A	NR	6E-22		0.0514	[0.041-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1360	chr3	101663554	101663555	rs7637230	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	3q12.3	NFKBIZ	rs7637230-A	NR	4E-8		1.18	NR	Illumina [up to 11532644] (imputed)	N
1360	chr3	101663554	101663555	rs7637230	25939698	Tsoi LC	2015-05-05	Nat Commun	Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.	Psoriasis	3,994 European ancestry cases, 7,699 European ancestry controls	6,268 European ancestry cases,  14,172 European ancestry controls, 5,033 cases, 5,707 controls	3q12.3	NFKBIZ	rs7637230-A	0.8	2E-10		1.14	[NR]	Illumina [696365] (imputed)	N
1360	chr3	101699153	101699154	rs1709393	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma and anxiety disorder	46,802 European ancestry asthma cases, 5,710 European ancestry anxiety disorder cases, 359,081 European ancestry controls	NA	3q12.3	LOC152225	rs1709393-?	NR	4E-8				Affymetrix [up to 8274727] (imputed)	N
1360	chr3	101699153	101699154	rs1709393	26754954	Otowa T	2016-01-12	Mol Psychiatry	Meta-analysis of genome-wide association studies of anxiety disorders.	Anxiety disorder	up to 7,016 European ancestry cases, up to 14,745 European ancestry controls	NA	3q12.3	LOC152225	rs1709393-C	0.42	2E-8		1.16	[1.10-1.23]	Affymetrix, Illumina, Perlegen [~ 6500000] (imputed)	N
1361	chr3	101722881	101722882	rs115840193	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q12.3	NR	rs115840193-?	NR	1E-8				Illumina [7760689] (imputed)	N
1361	chr3	101732104	101732105	rs7430935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q12.3		rs7430935-C	NR	2E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1361	chr3	101748637	101748638	rs771767	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and C-reactive protein levels (pleiotropy)	93,333 individuals	NA	3q12.3	ZPLD1	rs771767-?	NR	1E-8			[1.0713-1.1401]	NR [2418544]	N
1361	chr3	101748637	101748638	rs771767	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q12.3	NFKBIZ	rs771767-A	NR	9E-9		1.1	[1.09-1.12]	Illumina [465434]	N
1361	chr3	101749021	101749022	rs4325907	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q12.3	LOC152225	rs4325907-C	NR	2E-9		1.0751532	NR	Affymetrix, Illumina [8278136] (imputed)	N
1361	chr3	101755737	101755738	rs1398607	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	3q12.3	ZPLD1	rs1398607-?	NR	1E-8			[1.0794-1.1687]	NR [2487152]	N
1361	chr3	101762258	101762259	rs191925297	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	BAFF-R on transitional B cell	3,655 Sardinian (founder/genetic isolate) ancestry individuals	NA	3q12.3		rs191925297-G	0.03788	3E-8		0.3818	[0.25-0.52] unit decrease	Illumina [18237486] (imputed)	N
1361	chr3	101774042	101774043	rs991258	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Hip geometry	Up to 1,094 individuals from 241 families	NA	3q12.3	intergenic	rs991258-?	NR	5E-7	(ShaftW1)			Affymetrix [70897]	N
1361	chr3	101813807	101813811	rs138285281	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q12.3		rs138285281-T	NR	4E-10		0.0251	[0.017-0.033] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1361	chr3	101817078	101817079	rs56256405	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q12.3	ZPLD1	rs56256405-A	0.309173433639111	2E-6	(G_Senegalimassilia_HB)	0.252733	[0.15-0.36] unit decrease	Illumina [7711310] (imputed)	N
1361	chr3	101830030	101830031	rs6808445	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	3q12.3		rs6808445-T	0.628487991	3E-6		0.015528268	[0.009-0.022] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1362	chr3	101845938	101845939	rs75064168	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q12.3	NR	rs75064168-G	0.90908	8E-9		0.0206163	[0.014-0.028] unit decrease	NR [NR]	N
1362	chr3	101848560	101848561	rs10212363	23192594	Velez Edwards DR	2012-11-29	Hum Genet	Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.	Waist-to-hip circumference ratio (alcohol intake interaction)	8,203 African American females, 3,484 Hispanic females	NA	3q12.3	LOC152225, ZPLD1	rs10212363-A	0.22	2E-6	(Hispanic)	0.73	[0.43-1.02] unit increase	Affymetrix [706791]	N
1363	chr3	101986002	101986003	rs9838540	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q12.3	NR	rs9838540-?	NR	2E-11				Affymetrix [NR]	N
1363	chr3	101999124	101999125	rs1585775	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q12.3	ZPLD1	rs1585775-T	0.022	1E-6	(AA)	0.052	unit decrease	Illumina [NR] (imputed)	N
1364	chr3	102189168	102189169	rs17822656	30054556	Akiyama M	2018-07-27	J Hum Genet	Genome-wide association study suggests four variants influencing outcomes with ranibizumab therapy in exudative age-related macular degeneration.	Response to ranibizumab in age-related macular degeneration (exudative)	361 Japanese ancestry responder cases, 73 Japanese ancestry non-responder controls	363 Japanese ancestry responder cases, 122 Japanese ancestry non-responder controls	3q12.3	ZPLD1	rs17822656-G	0.098	2E-6		2.66	[1.76-4.00]	Illumina [6826359] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	3q12.3	ZPLD1, MIR548AB	rs2063640-A	0.1136	1E-6		0.1869	[0.11-0.26] unit decrease	NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls	NA	3q12.3	ZPLD1, MIR548AB	rs2063640-A	0.1049	2E-6		0.1927	[0.11-0.27] unit decrease	NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	3q12.3	NR	rs2063640-A	NR	3E-6				NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df)	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	3q12.3	ZPLD1, MIR548AB	rs2063640-A	NR	5E-6			[NR]	NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls	NA	3q12.3	ZPLD1, MIR548AB	rs2063640-A	0.1128	4E-7		0.186	[0.11-0.26] unit decrease	NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	3q12.3	ZPLD1, MIR548AB	rs2063640-A	NR	5E-7		0.191	[0.12-0.27] unit decrease	NR [NR] (imputed)	N
1364	chr3	102203044	102203045	rs2063640	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	3q12.3	ZPLD1, ARID1B	rs2063640-?	NR	2E-6	(Hypoesthesia, Recessive)			Illumina [243229]	N
1364	chr3	102203044	102203045	rs2063640	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q12.3	ZPLD1	rs2063640-A	0.17	3E-6	(Chinese+Malay+Indian)	1.23	[1.13-1.34]	Illumina [~ 2000000] (imputed)	N
1366	chr3	102424261	102424262	rs13434070	30098192	Shaaban S	2018-08-01	Invest Ophthalmol Vis Sci	Genome-Wide Association Study Identifies a Susceptibility Locus for Comitant Esotropia and Suggests a Parent-of-Origin Effect.	Amblyopia	386 European ancestry cases, 1,700 European ancestry controls	45 European ancestry cases, 180 European ancestry controls	3q12.3	NR	rs13434070-C	NR	1E-6		1.75	NR	Illumina [6470615] (imputed)	N
1367	chr3	102545557	102545558	rs62272860	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q12.3	intergenic	rs62272860-A	0.01680633706869	2E-6	(G_Coprobacter_RNT)	0.522725	[0.31-0.74] unit increase	Illumina [7711310] (imputed)	N
1367	chr3	102576850	102576851	rs825609	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3q12.3	NA	rs825609-T		6E-10		0.0141342	[0.0097-0.0186] unit increase	Illumina [13288253] (imputed)	N
1369	chr3	102831584	102831585	rs1304150	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Major depressive disorder (probable)	30,603 British ancestry cases, 143,916 British ancestry controls	NA	3q13.11	NR	rs1304150-T	0.8684	9E-7		0.0094	[0.0057-0.0131] unit increase	NR [7666894] (imputed)	N
1370	chr3	102985464	102985465	rs6441713	29489655	Liu X	2018-03-01	Medicine (Baltimore)	Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.	Egg allergy (maternal genetic effects)	201 European ancestry complete and incomplete trios	NA	3q13.11	NDUFA4P2, MIR548AB	rs6441713-?	NR	4E-6				Illumina [NR]	N
1371	chr3	103061413	103061414	rs6804462	32378780	Park B	2020-05-07	Cancer Sci	Genome-Wide Association Study of Genetic Variants Related to Anthracycline-Induced Cardiotoxicity in Early Breast Cancer.	Anthracycline-induced cardiotoxicity in early breast cancer	42 Korean ancestry cases, 215 Korean ancestry controls	NA	3q13.11	MIR548AB	rs6804462-C	0.039	3E-6				NR [346946]	N
1372	chr3	103196299	103196300	rs79526785	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3q13.11		rs79526785-?	NR	5E-9				Illumina [1128286]	N
1372	chr3	103245091	103245092	rs1397924	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs1397924-T	NR	1E-6		0.092	[0.055-0.129] unit decrease	Illumina [628922]	N
1372	chr3	103271448	103271449	rs721778	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.11		rs721778-T	0.7956	4E-13	(conditional-joint)	0.0127	[0.0094-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1373	chr3	103292225	103292226	rs4856162	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs4856162-G	NR	1E-6		0.091	[0.054-0.128] unit increase	Illumina [628922]	N
1373	chr3	103295383	103295384	rs9853928	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.11		rs9853928-T	0.2102	2E-13		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1373	chr3	103299582	103299583	rs1464015	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.11	Intergenic	rs1464015-T	0.2105	4E-16	(MTAG)	0.0131	[0.01-0.0162] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1373	chr3	103307641	103307642	rs7612581	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs7612581-T	NR	2E-6		0.088	[0.053-0.123] unit increase	Illumina [628922]	N
1373	chr3	103331482	103331483	rs9820695	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs9820695-G	NR	9E-7		0.091	[0.054-0.128] unit increase	Illumina [628922]	N
1373	chr3	103345438	103345439	rs9821642	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs9821642-G	NR	7E-7		0.092	[0.055-0.129] unit decrease	Illumina [628922]	N
1373	chr3	103359217	103359218	rs10937540	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs10937540-T	NR	4E-7		0.091	[0.056-0.126] unit decrease	Illumina [628922]	N
1373	chr3	103363060	103363061	rs10937544	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs10937544-C	NR	6E-6		0.088	[0.051-0.125] unit decrease	Illumina [628922]	N
1373	chr3	103368009	103368010	rs6776198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.11	Intergenic	rs6776198-A	0.2372	1E-12	(MTAG)	0.0138	[0.01-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1373	chr3	103378345	103378346	rs17586294	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Lung function	up to 4,291 Korean ancestry individuals	NA	3q13.11	MIR548AB, MIR548A3	rs17586294-A	0.0547	2E-6	(FVC)	0.7694	NR unit decrease	Affymetrix [305158]	N
1373	chr3	103380851	103380852	rs6775909	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs6775909-T	NR	6E-7		0.09	[0.055-0.125] unit increase	Illumina [628922]	N
1373	chr3	103397768	103397769	rs12485744	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs12485744-T	NR	2E-6		0.091	[0.054-0.128] unit increase	Illumina [628922]	N
1373	chr3	103400081	103400082	rs7628767	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs7628767-G	NR	1E-6		0.087	[0.052-0.122] unit increase	Illumina [628922]	N
1373	chr3	103403513	103403514	rs10511217	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs10511217-T	NR	2E-6		0.092	[0.055-0.129] unit decrease	Illumina [628922]	N
1374	chr3	103438873	103438874	rs4493441	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (environmentalism)	9,617 European ancestry individuals	NA	3q13.11	intergenic	rs4493441-G	NR	1E-6		0.087	[0.052-0.122] unit increase	Illumina [628922]	N
1374	chr3	103439329	103439330	rs57714592	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q13.11	Intergenic	rs57714592-T	0.7706	1E-8		0.0154	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1374	chr3	103450590	103450591	rs2677247	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q13.11	NR	rs2677247-C	0.602245139804096	9E-6	(IGP62)	0.1417	[0.079-0.204] unit decrease	Illumina [~ 2500000] (imputed)	N
1374	chr3	103492586	103492587	rs2061347	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum linoleic acid concentration in metabolic syndrome	426 Mediterranean individuals	NA	3q13.11	intergenic	rs2061347-A	0.169	9E-7		1.147	[0.7-1.6] unit decrease	Illumina [621723]	N
1374	chr3	103495232	103495233	rs71917575	30070759	Olsson M	2018-08-02	J Thromb Haemost	Genome-wide analysis of genetic determinants of circulating factor VII activating protease (FSAP) activity.	Plasma factor VII activating protease levels	3,126 Swedish ancestry individuals	NA	3q13.11	Intergenic	rs71917575-?		7E-6		32.3	[18.19-46.41] unit decrease	Illumina [~ 10000000] (imputed)	N
1374	chr3	103513435	103513436	rs1673866	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q13.11	NR	rs1673866-C	0.63878196306186	7E-6	(IGP47)	0.1439	[0.081-0.206] unit increase	Illumina [~ 2500000] (imputed)	N
1375	chr3	103589105	103589106	rs7653306	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.11	ALCAM	rs7653306-?	NR	6E-6	(TAG 54:4)	0.1533158	[0.087-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1376	chr3	103779932	103779936	rs10593874	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	3q13.11	RP11-40M23.1	rs10593874-TAGTC	0.940344333	9E-6		0.372255	[0.21-0.54] unit decrease	Illumina [6952813] (imputed)	N
1376	chr3	103785193	103785194	rs9851960	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.11	NR	rs9851960-T	0.317	5E-8		0.00631253	[0.004-0.0086] unit decrease	NR [9732723] (imputed)	N
1377	chr3	103850399	103850400	rs113850637	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Ovarian disease with few adhesions	1,686 European ancestry cases, 7,060 European ancestry controls.		3q13.11	ALCAM	rs113850637-?	NR	8E-7		1.28	[1.16-1.41]	Illumina [NR] (imputed)	N
1377	chr3	103880033	103880034	rs1920324	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	3q13.11	Intergenic	rs1920324-?		9E-6		1.3700507	[NR]	Affymetrix [492217] (imputed)	N
1377	chr3	103880357	103880357	rs11369626	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 3, length of philtrum)	2,187 European ancestry individuals	NA	3q13.11	NR	rs11369626-A	0.04975	1E-6		0.3273	[0.19-0.46] unit increase	Illumina [10677593] (imputed)	N
1378	chr3	103960836	103960837	rs28868104	31055733	Nazarian A	2019-05-05	Geroscience	Genetic heterogeneity of Alzheimer's disease in subjects with and without hypertension.	Alzheimer's disease in hypertension	1,262 European ancestry cases,  9,608 European ancestry controls	NA	3q13.11	MIR548AB	rs28868104-?	0.131	4E-7		1.4534883	[1.36-1.55]	NR [~ 2000000] (imputed)	N
1378	chr3	103975417	103975418	rs28641753	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	3q13.11	MIR548A3	rs28641753-T	0.071	2E-7	(EA)	2.1	[NR]	Illumina [6728637] (imputed)	N
1378	chr3	104051155	104051156	rs73180532	30737484	Thomsen H	2019-02-08	Leukemia	Genome-wide association study of monoclonal gammopathy of unknown significance (MGUS): comparison with multiple myeloma.	Monoclonal gammopathy of undetermined significance	992 European ancestry cases, 2,910 European ancestry controls	NA	3q13.11	AC016970.1	rs73180532-C		7E-6		1.28	[1.15-1.42]	Illumina [10258281] (imputed)	N
1380	chr3	104227361	104227362	rs2961333	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (femoral neck)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.11	NR	rs2961333-A	0.186	2E-6	(Males)	0.275012	[0.16-0.39] unit decrease	Illumina [~ 6600000] (imputed)	N
1380	chr3	104238379	104238380	rs7614520	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.11		rs7614520-C	0.625	1E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1380	chr3	104274355	104274356	rs34184910	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q13.11	ALCAM	rs34184910-A	0.627857	4E-8		0.0111436	[0.0072-0.0151] unit decrease	Affymetrix [NR] (imputed)	N
1380	chr3	104281079	104281080	rs140092704	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3q13.11	NR	rs140092704-?		5E-7	(PCB153)	0.76	[0.47-1.05] unit decrease	Illumina [8736858] (imputed)	N
1380	chr3	104282002	104282003	rs11715369	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.11	NR	rs11715369-T	0.215	5E-6	(Males)	0.287671	[0.17-0.41] unit decrease	Illumina [~ 6600000] (imputed)	N
1380	chr3	104282002	104282003	rs11715369	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.11	NR	rs11715369-T	0.215	7E-6	(Males)	0.273727	[0.16-0.39] unit decrease	Illumina [~ 6600000] (imputed)	N
1380	chr3	104289714	104289715	rs12637047	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid)	8,631 European ancestry individuals	NA	3q13.11	ALCAM	rs12637047-T	0.386	2E-6		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1381	chr3	104409207	104409208	rs2633682	33074286	Kunkle BW	2020-10-19	JAMA Neurol	Novel Alzheimer Disease Risk Loci and Pathways in African American Individuals Using the African Genome Resources Panel: A Meta-analysis.	Alzheimer's disease	2,784 African American cases, 5,222 African American controls	NA	3q13.11	ALCAM	rs2633682-?		9E-7	(model 1)	0.78	[0.71-0.86]	Illumina [29610185] (imputed)	N
1381	chr3	104418572	104418573	rs2685056	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q13.11	ALCAM	rs2685056-?	0.35	4E-8		2.5813	[1.939965-3.434586]	Illumina [859311]	N
1381	chr3	104451166	104451167	rs777948	29064910	Kure Fischer E	2017-10-23	Int Clin Psychopharmacol	A molecular pathway analysis informs the genetic risk for arrhythmias during antipsychotic treatment.	Antipsychotic drug-induced QTc interval change in schizophrenia	434 European ancestry individuals, 202 African ancestry individuals, 25 individuals	NA	3q13.11	NR	rs777948-C	NR	4E-6		3180.0	unit decrease	Affymetrix, Perlegen [1785543] (imputed)	N
1382	chr3	104552194	104552195	rs1436334	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3q13.11	ALCAM	rs1436334-A	0.4379	5E-6	(African)			Illumina [4404269] (imputed)	N
1383	chr3	104603838	104603839	rs4895110	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.11	NR	rs4895110-?	NR	1E-12				Affymetrix [NR]	N
1383	chr3	104606143	104606144	rs1436344	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.11	NA	rs1436344-C	0.5703	1E-17		0.0147	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1383	chr3	104607076	104607077	rs1436345	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	3q13.11	ALCAM	rs1436345-?	NR	4E-8	(EA)	0.00267	[0.00054-0.0048] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1383	chr3	104611899	104611900	rs58948644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q13.11		rs58948644-A	NR	4E-10		0.012	[0.0083-0.0157] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1383	chr3	104612667	104612668	rs1436348	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q13.11		rs1436348-G	0.58	8E-10				NR [NR] (imputed)	N
1383	chr3	104612667	104612668	rs1436348	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q13.11		rs1436348-G	0.58	6E-13		0.011	% increase	NR [NR] (imputed)	N
1383	chr3	104612667	104612668	rs1436348	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q13.11	ALCAM	rs1436348-A	0.417165	4E-12		0.00966304	[0.0069-0.0124] unit decrease	Affymetrix [12370749]	N
1383	chr3	104617972	104617973	rs1436351	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA		NA	rs1436351-T	0.7376	5E-16		0.0151	[0.011-0.019] unit increase	NR [~ 27400000] (imputed)	N
1383	chr3	104617972	104617973	rs1436351	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals		NR	rs1436351-T	NR	2E-17		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1383	chr3	104617972	104617973	rs1436351	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals		ALCAM	rs1436351-T	0.755	8E-6	(EA)	0.016	[0.0087-0.0229] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1383	chr3	104617972	104617973	rs1436351	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals		ALCAM	rs1436351-T	0.745	4E-6		0.016	[0.009-0.0224] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1383	chr3	104631602	104631603	rs9830592	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.11	NR	rs9830592-?	NR	6E-15				Affymetrix [~ 8270000] (imputed)	N
1383	chr3	104631602	104631603	rs9830592	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.11		rs9830592-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1383	chr3	104647182	104647183	rs4895120	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs4895120-T	0.5094	1E-9	(Cuneus)	5.4976354	[3.73-7.27] unit decrease	Affymetrix, Illumina [NR]	N
1383	chr3	104658327	104658328	rs6783013	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs6783013-?	NR	1E-9	(EA)	0.0895	[0.061-0.118] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104660607	104660608	rs13077489	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs13077489-?	NR	5E-8	(EA)	0.0845	[0.054-0.115] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104662432	104662433	rs13318870	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs13318870-T	0.4902	1E-11	(Lingual)	11.987969	[8.53-15.44] unit increase	Affymetrix, Illumina [NR]	N
1383	chr3	104666924	104666925	rs6782467	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q13.11		rs6782467-T	0.49	4E-48		14.57	z score increase	Affymetrix [9061022] (imputed)	N
1383	chr3	104666924	104666925	rs6782467	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q13.11	NR	rs6782467-T	0.4816	1E-17				NR [9056863] (imputed)	N
1383	chr3	104666924	104666925	rs6782467	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3q13.11	COL11A1	rs6782467-?		2E-13				NR [7428630] (imputed)	N
1383	chr3	104666969	104666970	rs6806605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q13.11	NR	rs6806605-?		6E-20				NR [7428630] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	3q13.11		rs12374063-A	0.49	5E-9				NR [13131314] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	3q13.11		rs12374063-A	0.49	3E-14				Affymetrix [9061022] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.11		rs12374063-A	0.49	9E-145		25.62	z score increase	Affymetrix [9061022] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	3q13.11		rs12374063-A	0.49	2E-9				NR [13131314] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	3q13.11		rs12374063-A	0.49	4E-9				Affymetrix [9061022] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q13.11		rs12374063-A	0.49	5E-84		19.43	z score increase	Affymetrix [9061022] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q13.11	NR	rs12374063-A	0.4811	1E-17				NR [9056863] (imputed)	N
1383	chr3	104667505	104667506	rs12374063	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q13.11		rs12374063-?	NR	2E-38				NR [9705931] (imputed)	N
1383	chr3	104669022	104669023	rs6789712	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs6789712-?	NR	1E-8	(EA)	0.0753	[0.049-0.101] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104674039	104674040	rs6788676	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	3q13.11	DAB1	rs6788676-?		2E-10				NR [7428630] (imputed)	N
1383	chr3	104674039	104674040	rs6788676	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3q13.11	NR	rs6788676-?		2E-20				NR [7428630] (imputed)	N
1383	chr3	104674039	104674040	rs6788676	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q13.11	KCNN3, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, SLC50A1, DPM3, KRTCAP2, RP11-201K10.3, TRIM46, MUC1, THBS3, MTX1, GBA, FAM189B, SCAMP3, CLK2, HCN3, PKLR, FDPS, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, LMNA	rs6788676-?		7E-10				NR [7428630] (imputed)	N
1383	chr3	104678132	104678133	rs9863836	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs9863836-T	0.21	3E-11	(Lateral Occipital)	21.619986	[15.24-28] unit decrease	Affymetrix, Illumina [NR]	N
1383	chr3	104683752	104683753	rs9288795	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs9288795-?	NR	2E-15	(EA)	0.1044	[0.079-0.13] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104695955	104695956	rs9827968	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q13.11	NR	rs9827968-?	NR	6E-9	(left cuneus)			NR [9227495] (imputed)	N
1383	chr3	104713880	104713881	rs12495603	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q13.11	ALCAM	rs12495603-?		1E-9	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104724218	104724219	rs9856782	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs9856782-A	0.7582	4E-12	(Inferior Parietal)	24.72034	[17.75-31.69] unit decrease	Affymetrix, Illumina [NR]	N
1383	chr3	104724633	104724634	rs971551	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q13.11	ALCAM	rs971551-?		2E-10	(Inferior parietal)			Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104724786	104724787	rs971550	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	3q13.11	ALCAM	rs971550-?		4E-15	(Pericalcarine)			Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104724786	104724787	rs971550	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs971550-?	NR	3E-17	(EA)	0.1192	[0.092-0.147] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1383	chr3	104724786	104724787	rs971550	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs971550-A	0.6934	2E-15	(Pericalcarine)	8.904564	[6.71-11.1] unit increase	Affymetrix, Illumina [NR]	N
1384	chr3	104735632	104735633	rs28551708	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.11	NR	rs28551708-T	0.1642	7E-9	(Lingual)	13.719678	[9.08-18.36] unit decrease	Affymetrix, Illumina [NR]	N
1384	chr3	104736836	104736837	rs16850772	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.11	NR	rs16850772-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1384	chr3	104738750	104738751	rs6437556	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (visual PC2)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q13.11	ALCAM	rs6437556-?	NR	1E-10	(EA)	0.1111	[0.077-0.145] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1384	chr3	104739290	104739291	rs72991212	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.11	NR	rs72991212-A	0.02265	2E-9	(BPNT1)	0.03088	NR unit increase	Illumina [1671387] (imputed)	N
1384	chr3	104778429	104778430	rs34967119	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q13.11	ALCAM	rs34967119-A	0.4958	1E-8		1.0202013		Affymetrix [11880941] (imputed)	N
1385	chr3	104858433	104858434	rs78461316	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (midfrontal cortex)	225 individuals	NA	3q13.11	intergenic	rs78461316-T	0.0587	3E-7		0.0749	NR unit increase	NR [NR] (imputed)	N
1385	chr3	104864330	104864331	rs9862599	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Testicular cancer	713 European ancestry cases, 359,825 European ancestry controls	NA	3q13.11		rs9862599-G	0.116071	2E-7		1.4727561	NR	Affymetrix [7846216] (imputed)	N
1385	chr3	104864330	104864331	rs9862599	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	3q13.11	ALCAM	rs9862599-G	0.0761	1E-8		1.21574	[1.13634-1.30069]	Illumina [4946503] (imputed)	N
1385	chr3	104927717	104927717	rs556316811	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		3q13.11	intergenic	rs556316811-CA	0.321634	7E-6		0.422444	[0.24-0.6] unit increase	Illumina [640625] (imputed)	N
1385	chr3	104981250	104981251	rs952365	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q13.11	NR	rs952365-A	NR	5E-7	(GEE model)	0.8233	[0.5-1.14] unit decrease	NR [NR] (imputed)	N
1386	chr3	105010889	105010890	rs9810233	22704111	Hotaling JM	2012-06-13	J Urol	Pilot genome-wide association search identifies potential loci for risk of erectile dysfunction in type 1 diabetes using the DCCT/EDIC study cohort.	Erectile dysfunction in type 1 diabetes	125 European ancestry cases, 403 European ancestry controls	NA	3q13.11	ALCAM	rs9810233-G	0.270	7E-7				Illumina [840354]	N
1386	chr3	105055538	105055538	rs11391380	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q13.11	MIR548A3, ALCAM	rs11391380-A	0.3144	7E-11		0.096	[0.066-0.126] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1386	chr3	105073471	105073472	rs6437582	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3q13.11	ALCAM	rs6437582-A	NR	8E-13		0.0529	unit decrease	Illumina [15409056] (imputed)	N
1386	chr3	105073471	105073472	rs6437582	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3q13.11		rs6437582-A	0.396267	1E-12		0.0647667	[0.046-0.083] decrease	Affymetrix [11014269] (imputed)	N
1386	chr3	105073471	105073472	rs6437582	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q13.11	MIR548A3, ALCAM	rs6437582-A	0.3954	2E-15		0.111	[0.083-0.139] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1386	chr3	105079360	105079361	rs9825097	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.11	ALCAM	rs9825097-A	0.8684375	7E-7	(ALCAM, 5451_1_3)	0.17357394	[0.11-0.24] unit increase	Illumina [> 1000000] (imputed)	N
1387	chr3	105121938	105121939	rs13092905	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3q13.11	ALCAM	rs13092905-C	NR	6E-6	(adjusted for total body fat)	0.239	[0.14-0.34] unit decrease	Illumina [8511049] (imputed)	N
1387	chr3	105174201	105174202	rs138904061	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	3q13.11	ALCAM	rs138904061-C	0.16	6E-6		0.09	[0.051-0.129] unit decrease	Illumina [~ 8300000] (imputed)	N
1387	chr3	105198373	105198374	rs7431531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.11	Intergenic	rs7431531-T	0.6794	1E-9	(MTAG)	0.0107	[0.0072-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr3	105198373	105198374	rs7431531	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.11	Intergenic	rs7431531-T	0.6764	2E-8	(MTAG)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr3	105234996	105234997	rs58582466	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.11	Intergenic	rs58582466-A	0.1852	1E-8	(MTAG)	0.0131	[0.0086-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1387	chr3	105234996	105234997	rs58582466	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q13.11	Intergenic	rs58582466-T	0.8148	1E-8		0.0144	[0.0095-0.0193] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1387	chr3	105249210	105249211	rs3772556	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3q13.11	ALCAM	rs3772556-T	0.287861	2E-8		5.59	z score decrease	NR [~ 10847151] (imputed)	N
1388	chr3	105268428	105268429	rs17189452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.11		rs17189452-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1388	chr3	105284044	105284045	rs9830049	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.11	ALCAM	rs9830049-C	0.12	3E-16	(CD166 antigen, ALCAM.5451.1.3)	0.31	[0.23-0.39] unit decrease	Affymetrix [10572788] (imputed)	N
1388	chr3	105336787	105336788	rs34476301	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	3q13.11	ALCAM, CBLB	rs34476301-A	0.08	7E-6		0.37	unit increase	Illumina [5600000] (imputed)	N
1389	chr3	105394831	105394831	rs559116500	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q13.11	NR	rs559116500-CT	NR	5E-9		0.0156	[0.01-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1389	chr3	105394832	105394832	rs34061447	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q13.11		rs34061447-CT	NR	1E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1389	chr3	105401405	105401406	rs2301051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q13.11		rs2301051-T	NR	4E-10		0.0139	[0.0096-0.0182] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1389	chr3	105406467	105406468	rs13315174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q13.11	NR	rs13315174-G	0.783772	6E-17		0.00806694	[0.0061-0.0101] unit increase	Affymetrix [16582909] (imputed)	N
1389	chr3	105406467	105406468	rs13315174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q13.11	NR	rs13315174-G	0.784277	2E-10		0.00780161	[0.0051-0.0106] unit increase	Affymetrix [16582621] (imputed)	N
1389	chr3	105406467	105406468	rs13315174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q13.11	NR	rs13315174-G	0.783772	1E-12		0.00756575	[0.0053-0.0098] unit increase	Affymetrix [16582965] (imputed)	N
1389	chr3	105406467	105406468	rs13315174	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q13.11	NR	rs13315174-G	0.784277	5E-8		0.00735622	[0.0044-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
1389	chr3	105409320	105409321	rs1546733	31447353	Maciukiewicz M	2019-08-22	Schizophr Res	Genome-wide association study on antipsychotic-induced weight gain in Europeans and African-Americans.	Antipsychotic drug-induced weight gain in schizophrenia or autism	269 European ancestry individuals	NA	3q13.11	CBLB	rs1546733-?	NR	6E-6		4.524	z-score decrease	Illumina [NR] (imputed)	N
1389	chr3	105422023	105422024	rs1443105	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3q13.11	CBLB	rs1443105-T	NR	3E-7		0.030102	[0.019-0.042] unit increase	Illumina [13520550] (imputed)	N
1389	chr3	105423889	105423889	rs111514298	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q13.11		rs111514298-CCTTTT	NR	9E-13		0.0119	[0.0086-0.0152] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1389	chr3	105423889	105423889	rs111514298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q13.11	NR	rs111514298-CCTTTT	NR	4E-9		0.0146	[0.0097-0.0195] unit increase	Affymetrix [9000000] (imputed)	N
1389	chr3	105452592	105452593	rs17202341	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q13.11	NR	rs17202341-G	0.34815399999999996	1E-9		0.00747852	[0.0049-0.01] unit increase	Affymetrix [16585854] (imputed)	N
1389	chr3	105452592	105452593	rs17202341	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q13.11	NR	rs17202341-G	0.34815399999999996	7E-8		0.00762518	[0.0047-0.0105] unit increase	Affymetrix [16585866] (imputed)	N
1389	chr3	105455954	105455955	rs2289746	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q13.11	CBLB	rs2289746-C	NR	5E-12		1.0846	NR	Affymetrix, Illumina [8278136] (imputed)	N
1389	chr3	105455954	105455955	rs2289746	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q13.11	CBLB	rs2289746-T	0.4096	2E-10		0.0019	[0.0013-0.0025] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1389	chr3	105455954	105455955	rs2289746	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	3q13.11	CBLB	rs2289746-T	0.6897	8E-6		0.0032	[0.0018-0.0046] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1389	chr3	105480290	105480291	rs7644634	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3q13.11	CBLB	rs7644634-T	NR	7E-7		0.0188055	[0.011-0.026] unit increase	Illumina [13520550] (imputed)	N
1389	chr3	105499838	105499839	rs11926659	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q13.11		rs11926659-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1390	chr3	105586713	105586714	rs9657904	28445677	Steri M	2017-04-27	N Engl J Med	Overexpression of the Cytokine BAFF and Autoimmunity Risk.	Multiple sclerosis	2,273 Sardinian cases, 2,148 Sardinian controls	6,840 European ancestry cases, 661 Sardinian cases, 3,176 cases, 6,044 European ancestry controls, 1,244 Sardinian controls, 2,958 controls	3q13.11	CBLB	rs9657904-T	0.832	2E-7		1.37		Affymetrix [~ 12200000] (imputed)	N
1390	chr3	105586713	105586714	rs9657904	20453840	Sanna S	2010-05-09	Nat Genet	Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.	Multiple sclerosis	882 Sardinian cases, 872 Sardinian controls	1,775 Sardinian cases, 2,005 Sardinian controls	3q13.11	CBLB	rs9657904-T	0.826	2E-10		1.4	[1.27-1.57]	Affymetrix [6607266] (imputed)	N
1390	chr3	105643848	105643849	rs6765145	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Waist circumference	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q13.11	LINC00882, CBLB	rs6765145-?	NR	6E-7	(TransMeta)			Illumina [3153931] (imputed)	N
1391	chr3	105654142	105654143	rs16851797	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus (severest)	87,314 British ancestry individuals	NA	3q13.11	NR	rs16851797-G	NR	2E-7		0.0145662	[0.0091-0.02] unit decrease	Affymetrix [9740198] (imputed)	N
1391	chr3	105772039	105772040	rs60328885	28441426	White CC	2017-04-25	PLoS Med	Identification of genes associated with dissociation of cognitive performance and neuropathological burden: Multistep analysis of genetic, epigenetic, and transcriptional data.	Residual cognition	979 European ancestry individuals	NA	3q13.11	intergenic	rs60328885-A	0.1	2E-6		0.34	[NR] z score decrease	Affymetrix, Illumina [~ 7000000] (imputed)	N
1392	chr3	105875545	105875546	rs75697854	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3q13.11	Intergenic	rs75697854-C	NR	1E-6		0.0519699	[0.031-0.073] unit increase	Illumina [13520550] (imputed)	N
1393	chr3	105927530	105927531	rs34822076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q13.11		rs34822076-C	NR	6E-17		0.0902	[0.069-0.111] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1393	chr3	105934952	105934953	rs13090803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3q13.11		rs13090803-T	NR	9E-11		0.0829	[0.058-0.108] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
1393	chr3	105934952	105934953	rs13090803	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q13.11	Y_RNA	rs13090803-T	0.21057	5E-17		0.094675176	[0.073-0.117] unit increase	Affymetrix [7288503] (imputed)	N
1393	chr3	105934952	105934953	rs13090803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q13.11		rs13090803-?	NR	6E-18				NR [~ 8900000] (imputed)	N
1393	chr3	105934952	105934953	rs13090803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.11		rs13090803-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1393	chr3	105935232	105935233	rs57512118	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3q13.11	NR	rs57512118-T	0.238	7E-19		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1393	chr3	105948517	105948518	rs1921445	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q13.11		rs1921445-?	NR	9E-12				NR [~ 8900000] (imputed)	N
1393	chr3	106024684	106024685	rs79194774	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	3q13.11	NR	rs79194774-?	NR	3E-6		0.081471	[0.047-0.116] unit increase	Affymetrix [9658292] (imputed)	N
1393	chr3	106026315	106026316	rs34658943	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.11	Intergenic	rs34658943-T	0.5643	5E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1395	chr3	106201407	106201408	rs116168967	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Oral cavity and pharyngeal cancer	1,223 European ancestry cases, 410,350 European ancestry controls	NA	3q13.11		rs116168967-A	0.017861	4E-7		1.8291568	NR	Affymetrix [7846216] (imputed)	N
1395	chr3	106208881	106208882	rs2712475	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3q13.11	Intergenic	rs2712475-?	NR	7E-6		1.5236934	[NR]	Affymetrix [492217] (imputed)	N
1395	chr3	106262304	106262305	rs35932034	33772158	Hoggart C	2021-03-26	Eur J Hum Genet	Identification of novel locus associated with coronary artery aneurysms and validation of loci for susceptibility to Kawasaki disease.	Coronary artery aneurysm in Kawasaki disease	200 European ancestry cases, 276 European ancestry controls	NA	3q13.12	intergenic	rs35932034-C	0.11	4E-6		0.2	[0.09-0.4]	Illumina [4873589] (imputed)	N
1395	chr3	106288949	106288950	rs12491921	21668797	Agrawal A	2010-11-04	Addict Biol	A genome-wide association study of DSM-IV cannabis dependence.	Cannabis dependence	708 African American or European ancestry cases, 2,346 African American or European ancestry controls	NA	3q13.12	intergenic	rs12491921-?	NR	1E-6		1.39	[1.22-1.58]	Illumina [948142]	N
1395	chr3	106294461	106294462	rs79757846	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q13.12	NR	rs79757846-?	NR	4E-6	(EA)	0.9748	[0.57-1.38] unit decrease	Illumina [up to 11892802] (imputed)	N
1396	chr3	106377817	106377818	rs561030786	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) and anti-thyroglobulin (TgAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	3q13.12	DUBR	rs561030786-C	0.92	7E-6				Illumina [6007542] (imputed)	N
1397	chr3	106499358	106499359	rs2139709	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.12	NR	rs2139709-?	NR	2E-14				Affymetrix [NR]	N
1398	chr3	106571022	106571023	rs73199442	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Subpleural-predominant interstitial lung abnormalities	965 European ancestry cases, 154 African American cases, 168 cases, 7,255 European ancestry controls, 1,717 African American controls, 450 controls	NA	3q13.12	FCF1P3	rs73199442-T	0.06	7E-6		1.61	[1.31-1.99]	Affymetrix, Illumina [at least 412049] (imputed)	N
1398	chr3	106571022	106571023	rs73199442	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	3q13.12	FCF1P3	rs73199442-T	0.06	5E-9	(EA)	1.68	[1.39-2.02]	Affymetrix, Illumina [at least 412049] (imputed)	N
1398	chr3	106571022	106571023	rs73199442	31339356	Hobbs BD	2019-07-24	Am J Respir Crit Care Med	Overlap of Genetic Risk Between Interstitial Lung Abnormalities and Idiopathic Pulmonary Fibrosis.	Interstitial lung abnormalities	1,181 European ancestry cases, 280 African American cases, 54 Hispanic cases, 184 cases, 7,255 European ancestry controls, 2,184 African American controls, 385 Hispanic controls, 450 controls	NA	3q13.12	FCF1P3	rs73199442-T	0.06	5E-8		1.68	[1.39-2.02]	Affymetrix, Illumina [at least 412049] (imputed)	N
1398	chr3	106632358	106632359	rs73200562	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.12	NR	rs73200562-C	0.05052	1E-8	(MAP4)	0.01096	NR unit increase	Illumina [1671387] (imputed)	N
1398	chr3	106639718	106639719	rs1568206	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	3q13.12	NR	rs1568206-?		9E-7		3.087	[2.1-4.08] unit increase	Illumina [~ 4900000] (imputed)	N
1398	chr3	106642622	106642623	rs189368355	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q13.12		rs189368355-A	NR	1E-8		0.087	[0.057-0.117] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1398	chr3	106657024	106657025	rs138920662	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q13.12	NR	rs138920662-?	NR	2E-6		1.52303	[0.9-2.15] unit increase	NR [13958389] (imputed)	N
1399	chr3	106734130	106734131	rs2399126	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	3q13.12	intergenic	rs2399126-?	NR	6E-6	(Overall Startle Scores)	0.057	[0.032-0.082] unit decrease	Illumina [527829]	N
1399	chr3	106777676	106777677	rs9821348	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA	3q13.12	intergenic	rs9821348-G	NR	5E-6		0.191146	[0.11-0.27] unit increase	Illumina [7433384] (imputed)	N
1400	chr3	106831859	106831860	rs571651298	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q13.12	LINC00882	rs571651298-T	0.0037	8E-7		0.3987	[0.24-0.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1401	chr3	106961497	106961498	rs1283106	29555444	Hamer MA	2018-03-16	J Invest Dermatol	Facial Wrinkles in Europeans: a Genome-Wide Association Study.	Facial wrinkles	3,513 north-western European ancestry individuals	599 north-western European ancestry individuals	3q13.12	NR	rs1283106-A	0.37	2E-6		4.77	[NR] z score decrease	Illumina [9009554] (imputed)	N
1401	chr3	106962520	106962521	rs1283104	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q13.12	NR	rs1283104-G	NR	3E-11		1.045	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1401	chr3	106962520	106962521	rs1283104	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q13.12	DUBR	rs1283104-G	0.38	9E-9		1.05	[1.03-1.07]	Illumina [20370935] (imputed)	N
1401	chr3	106985327	106985328	rs72620089	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q13.12	CCDC54	rs72620089-C	0.724384	3E-8	(-38 ms)	0.0350703	[0.023-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
1401	chr3	106987470	106987471	rs77639587	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	3q13.12	NR	rs77639587-T	0.9714951	2E-6		1.3329779	[1.18-1.51]	Affymetrix [16309199] (imputed)	N
1401	chr3	107052082	107052083	rs9842143	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	3q13.12	CCDC54	rs9842143-A	0.51	4E-6		0.2	[0.12-0.28] unit increase	Illumina [7597379] (imputed)	N
1402	chr3	107091902	107091903	rs793545	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q13.12	NR	rs793545-C	0.355248	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
1402	chr3	107100039	107100040	rs1515543	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.12		rs1515543-C	0.17	3E-10		6.31	z score increase	Affymetrix [9061022] (imputed)	N
1402	chr3	107112554	107112555	rs10511262	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs10511262-C	NR	2E-8		5.589	z score increase	Affymetrix [10847151] (imputed)	N
1402	chr3	107143798	107143799	rs75737648	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3q13.12	NR	rs75737648-T	NR	2E-8		0.02096	NR unit decrease	NR [7259579]	N
1402	chr3	107172032	107172033	rs75701938	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs75701938-A	NR	1E-10		6.444	z score increase	Affymetrix [10847151] (imputed)	N
1402	chr3	107183438	107183439	rs6785450	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs6785450-A	NR	2E-10		6.37	z score decrease	Affymetrix [10847151] (imputed)	N
1402	chr3	107184850	107184851	rs6778790	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q13.12		rs6778790-A	0.167793	9E-9		0.0153766	[0.01-0.021] unit decrease	Illumina [13479295] (imputed)	N
1402	chr3	107184850	107184851	rs6778790	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.12	LOC101929607, BBX	rs6778790-?	NR	2E-9		0.022834849	[0.015-0.03] unit decrease	Illumina [27896057] (imputed)	N
1402	chr3	107190554	107190555	rs138789759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q13.12		rs138789759-A	NR	3E-23		0.0469	[0.038-0.056] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1402	chr3	107193164	107193165	rs1282537	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q13.12	NR	rs1282537-G	0.318	1E-7	(IFNgamma_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1402	chr3	107193336	107193337	rs151038334	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q13.12	NR	rs151038334-C	NR	2E-8		1.079	[1.05-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1402	chr3	107196459	107196460	rs6763295	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q13.12		rs6763295-A	NR	5E-11		0.0098	[0.0069-0.0127] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1402	chr3	107198450	107198451	rs2090408	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q13.12	NR	rs2090408-?	NR	2E-9		0.01416	[0.0095-0.0188] unit decrease	Affymetrix [10847151] (imputed)	N
1402	chr3	107199708	107199709	rs1282545	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3q13.12	NR	rs1282545-C	NR	6E-9		0.0139	NR unit increase	NR [7259579]	N
1402	chr3	107199708	107199709	rs1282545	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q13.12		rs1282545-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1402	chr3	107199708	107199709	rs1282545	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q13.12	NR	rs1282545-T	0.436332	9E-13		7.15	z score decrease	NR [10847151] (imputed)	N
1402	chr3	107199708	107199709	rs1282545	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q13.12	BBX	rs1282545-T	0.56367	2E-8		5.636	z score decrease	Illumina [18485882] (imputed)	N
1402	chr3	107201427	107201428	rs836927	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	3q13.12	NR	rs836927-A	0.4257	4E-8		0.01067	[0.0069-0.0145] unit increase	NR [8968716] (imputed)	N
1402	chr3	107201427	107201428	rs836927	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs836927-A	NR	7E-12		6.864	z score increase	Affymetrix [10847151] (imputed)	N
1402	chr3	107201427	107201428	rs836927	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q13.12	NR	rs836927-?	NR	4E-10		0.01484	[0.01-0.019] unit increase	Affymetrix [10847151] (imputed)	N
1402	chr3	107201427	107201428	rs836927	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	3q13.12	NR	rs836927-A	0.436326	1E-8		5.69	z score increase	NR [10847151] (imputed)	N
1402	chr3	107201575	107201576	rs1568422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q13.12	NR	rs1568422-T	NR	2E-9		0.0285	[0.019-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1402	chr3	107201575	107201576	rs1568422	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.12	NR	rs1568422-T	NR	1E-22		0.0463	[0.037-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1403	chr3	107225677	107225678	rs10513196	33296963	Brugger SW	2020-10-04	Mult Scler Relat Disord	Depression in multiple sclerosis patients associated with risk variant near NEGR1.	Depression in multiple sclerosis	182 European ancestry cases, 1,180 European ancestry controls	NA	3q13.12	BBX	rs10513196-A	NR	4E-7		1.9	NR	Illumina [602644]	N
1403	chr3	107233411	107233412	rs16853573	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q13.12	NR	rs16853573-C	0.07673	7E-22		0.004122	[0.0033-0.005] unit increase	Affymetrix [NR] (imputed)	N
1403	chr3	107235108	107235109	rs34040779	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q13.12	NR	rs34040779-T	0.924496	5E-9		0.0335641	[0.022-0.045] unit increase	Affymetrix [16577313] (imputed)	N
1403	chr3	107235108	107235109	rs34040779	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3q13.12	NR	rs34040779-T	0.924329	2E-9		0.0348252	[0.023-0.046] unit increase	Affymetrix [16577424] (imputed)	N
1403	chr3	107238606	107238607	rs513007	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q13.12	BBX	rs513007-C	NR	4E-8		0.0213109	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1403	chr3	107239782	107239783	rs62263343	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q13.12	BBX	rs62263343-A	0.178013	3E-12		0.020361839	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1403	chr3	107239782	107239783	rs62263343	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.12	NR	rs62263343-G	0.827576	8E-17				Affymetrix, Illumina [17210439] (imputed)	N
1403	chr3	107245050	107245051	rs9876650	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.12	NR	rs9876650-T	0.171532	4E-18				Affymetrix, Illumina [23114412] (imputed)	N
1403	chr3	107246784	107246785	rs507078	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Irritable mood	366,726 European ancestry individuals	NA	3q13.12	BBX	rs507078-T	0.296032	4E-8		5.49	z score increase	NR [~ 10847151] (imputed)	N
1403	chr3	107247429	107247430	rs80152782	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	3q13.12	BBX	rs80152782-A	0.014091705	9E-6		1.7656513	[1.372958748-2.270661615]	Illumina [10439017] (imputed)	N
1403	chr3	107252189	107252190	rs62263345	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3q13.12	BBX	rs62263345-?	NR	5E-10			[NR]	NR [NR] (imputed)	N
1403	chr3	107253000	107253001	rs583593	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs583593-A	NR	5E-11		6.582	z score increase	Affymetrix [10847151] (imputed)	N
1403	chr3	107268608	107268609	rs9868075	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3q13.12	BBX	rs9868075-?	NR	3E-8		0.014295965	[0.0092-0.0194] unit decrease	NR [7306098]	N
1403	chr3	107270459	107270460	rs16853606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.12	NR	rs16853606-G	NR	4E-16		0.0274	[0.021-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1403	chr3	107280485	107280486	rs13060816	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q13.12	NR	rs13060816-?	NR	3E-9		0.01381	[0.0093-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
1403	chr3	107280997	107280999	rs143373690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q13.12		rs143373690-T	NR	1E-13		0.0229	[0.017-0.029] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1403	chr3	107289927	107289928	rs604988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q13.12	BBX	rs604988-G	0.302955	2E-12		0.016914444	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1403	chr3	107294633	107294634	rs28428925	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3q13.12	BBX	rs28428925-G	0.1365	1E-9		0.0214	[0.015-0.028] unit decrease	NR [NR]	N
1403	chr3	107295391	107295392	rs600011	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q13.12	NR	rs600011-C	NR	2E-10		0.01613	[0.011-0.021] unit increase	Affymetrix [10847151] (imputed)	N
1403	chr3	107295391	107295392	rs600011	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	3q13.12	BBX	rs600011-A	0.29221	5E-9		5.84	z score decrease	NR [10847151] (imputed)	N
1403	chr3	107295391	107295392	rs600011	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.12	CCDC54	rs600011-?	NR	7E-6	(TAG 56:8)	0.16274934	[0.092-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1403	chr3	107295550	107295550	rs150221903	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	3q13.12	intergenic	rs150221903-?	NR	7E-11		0.00819737	[0.0057-0.0107] unit decrease	Affymetrix [NR] (imputed)	N
1403	chr3	107295664	107295665	rs7639292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q13.12	BBX	rs7639292-T	0.170183	4E-18		0.025590548	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1403	chr3	107295664	107295665	rs7639292	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q13.12	BBX	rs7639292-T	0.170234	3E-15		0.02336932	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1403	chr3	107295664	107295665	rs7639292	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q13.12	NR	rs7639292-T	0.168472	2E-22		0.023984	[0.019-0.029] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1403	chr3	107296627	107296628	rs28513882	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.12		rs28513882-A	0.1783	2E-9		0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1403	chr3	107296968	107296969	rs62261974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.12	Intergenic	rs62261974-A	0.8223	5E-10	(MTAG)	0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1403	chr3	107299697	107299698	rs683194	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.12	NR	rs683194-G	0.298738	2E-11				Affymetrix, Illumina [23467995] (imputed)	N
1403	chr3	107302898	107302898	rs567479228	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q13.12		rs567479228-AT	NR	5E-10		0.02	[0.014-0.026] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1403	chr3	107302898	107302898	rs567479228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q13.12	NR	rs567479228-I	0.1642	4E-18		0.024424	[0.019-0.03] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1403	chr3	107307502	107307503	rs1697692	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs1697692-T	NR	3E-10		6.303	z score increase	Affymetrix [10847151] (imputed)	N
1403	chr3	107307502	107307503	rs1697692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q13.12	BBX	rs1697692-T	0.461942	4E-10		6.25	z score increase	NR [10847151] (imputed)	N
1403	chr3	107307502	107307503	rs1697692	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3q13.12	BBX	rs1697692-T	0.461942	2E-8		5.6	unit increase	NR [10847151] (imputed)	N
1403	chr3	107312979	107312980	rs670752	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q13.12	BBX	rs670752-A	0.296	3E-10	(AA,women)	0.024	[0.016-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1403	chr3	107312979	107312980	rs670752	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.12	CCDC54	rs670752-?	NR	5E-6	(TAG 52:6)	0.16981238	[0.097-0.242] unit increase	Affymetrix [at least 2500000] (imputed)	N
1403	chr3	107328257	107328258	rs9878536	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.12	NR	rs9878536-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1403	chr3	107338986	107338986	rs756635043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q13.12	NR	rs756635043-D	0.175768	3E-18		0.022431	[0.017-0.027] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1403	chr3	107340768	107340769	rs9839653	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.12	NA	rs9839653-A	0.83	8E-10		0.0155	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1403	chr3	107346972	107346973	rs667172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q13.12		rs667172-A	NR	2E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1403	chr3	107346972	107346973	rs667172	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q13.12		rs667172-A	NR	2E-13		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1403	chr3	107346972	107346973	rs667172	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q13.12	NR	rs667172-A	NR	2E-9		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1404	chr3	107367718	107367719	rs676556	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q13.12		rs676556-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1404	chr3	107367718	107367719	rs676556	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q13.12	NR	rs676556-G	0.19	2E-9		0.014	[0.0095-0.0185] unit increase	Affymetrix [2446094] (imputed)	N
1404	chr3	107367718	107367719	rs676556	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q13.12	NR	rs676556-G	0.19	5E-8				Affymetrix [2446094] (imputed)	N
1404	chr3	107373124	107373125	rs9817115	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q13.12	NR	rs9817115-A	NR	3E-9		0.0248	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1404	chr3	107374639	107374640	rs75774080	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.12	Intergenic	rs75774080-T	0.1642	1E-8	(MTAG)	0.0127	[0.0084-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr3	107379836	107379837	rs167924	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q13.12	BBX	rs167924-G	0.622854	2E-19		0.0208252	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1404	chr3	107379836	107379837	rs167924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.12	NR	rs167924-G	0.689237	8E-23				Affymetrix, Illumina [24588908] (imputed)	N
1404	chr3	107379836	107379837	rs167924	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q13.12	NR	rs167924-G	0.624475	3E-24		0.019234	[0.016-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1404	chr3	107381650	107381651	rs9869574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q13.12		rs9869574-C	NR	2E-9		0.0188	[0.013-0.025] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1404	chr3	107381650	107381651	rs9869574	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q13.12		rs9869574-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1404	chr3	107383336	107383337	rs9879864	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	3q13.12	NR	rs9879864-?	NR	2E-6		0.0665	[0.039-0.094] unit increase	Illumina [at least 560000] (imputed)	N
1404	chr3	107385667	107385668	rs28447555	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q13.12		rs28447555-T	NR	2E-8		0.0171	[0.011-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1404	chr3	107385667	107385668	rs28447555	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.12		rs28447555-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1404	chr3	107385667	107385668	rs28447555	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q13.12	Intergenic	rs28447555-T	0.1784	3E-8	(MTAG)	0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1404	chr3	107386893	107386894	rs329923	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.12	NR	rs329923-A	NR	4E-8		5.509	z score decrease	Affymetrix [10847151] (imputed)	N
1404	chr3	107395132	107395133	rs9811759	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.12	NR	rs9811759-G	0.13803	6E-21				Affymetrix, Illumina [24649327] (imputed)	N
1404	chr3	107399128	107399129	rs6782394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.12		rs6782394-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1404	chr3	107424089	107424090	rs9846246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q13.12		rs9846246-?	NR	2E-29				NR [~ 8900000] (imputed)	N
1404	chr3	107424089	107424090	rs9846246	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q13.12	BBX	rs9846246-A	NR	5E-11		0.040702	NR unit decrease	NR [NR] (imputed)	N
1404	chr3	107427968	107427969	rs9838703	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.12	NR	rs9838703-T	0.387904	2E-16		0.0260915	[0.02-0.032] unit increase	NR [19129689] (imputed)	N
1404	chr3	107457503	107457504	rs112116969	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q13.12	BBX	rs112116969-A	0.0023	6E-6		0.8843	[0.5-1.27] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1404	chr3	107464169	107464170	rs11710737	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q13.12	NR	rs11710737-?	NR	6E-6		4.513	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1404	chr3	107465816	107465817	rs6437740	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q13.12	BBX	rs6437740-?	0.24	2E-7	(CPD)	0.1	[NR] cigarettes per day decrease	Illumina [~ 518000]	N
1405	chr3	107494344	107494345	rs9871235	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q13.12	NR	rs9871235-A	0.6143	6E-8		0.0095	[0.006-0.013] unit increase	NR [~ 27400000] (imputed)	N
1405	chr3	107501281	107501282	rs873093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q13.12	BBX	rs873093-C	0.386564	2E-17		0.019650465	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1405	chr3	107532149	107532150	rs17813292	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q13.12	NR	rs17813292-G	NR	2E-12		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1405	chr3	107544645	107544646	rs2029773	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	3q13.12	LINC00635	rs2029773-?		8E-6				Illumina [5970354] (imputed)	N
1405	chr3	107562876	107562877	rs75515191	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3q13.12	intergenic	rs75515191-C	0.002	2E-6		15.21	[3.37-68.63]	Illumina [1556551]	N
1405	chr3	107564458	107564459	rs7644809	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	3q13.12	NR	rs7644809-T	NR	1E-6		0.624	unit increase	Affymetrix [14661600] (imputed)	N
1405	chr3	107567129	107567130	rs10933917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q13.12		rs10933917-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1405	chr3	107570752	107570753	rs1897495	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3q13.12	intergenic	rs1897495-?	NR	1E-8		0.014157	[0.0093-0.019] unit decrease	Affymetrix [25921788] (imputed)	N
1405	chr3	107582494	107582495	rs117707735	31959922	Matoba N	2020-01-20	Nat Hum Behav	GWAS of 165,084 Japanese individuals identified nine loci associated with dietary habits.	Yoghurt consumption	83,150 Japanese ancestry men, 69,757 Japanese ancestry women	NA	3q13.12	LINC00635	rs117707735-?		1E-7	(men)			Illumina [6108828] (imputed)	N
1406	chr3	107629974	107629975	rs4974375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.12	Intergenic	rs4974375-C	0.3846	3E-9	(MTAG)	0.0109	[0.0074-0.0144] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr3	107629974	107629975	rs4974375	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.12	Intergenic	rs4974375-C	0.3847	4E-9	(MTAG)	0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1406	chr3	107694833	107694834	rs709498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q13.12		rs709498-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1406	chr3	107699359	107699360	rs1653902	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q13.12	NR	rs1653902-T	0.482	7E-6	(IFNgamma_STAT1_of_Monocytes)			Illumina [5084123] (imputed)	N
1406	chr3	107727401	107727402	rs62262357	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Phascolarctobacterium sp003150755 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.12		rs62262357-T	0.0360956	3E-9		0.185413	[0.12-0.25] unit increase	Illumina [7980478] (imputed)	N
1407	chr3	107757059	107757060	rs696366	34002096	Mullins N	2021-05-17	Nat Genet	Genome-wide association study of more than 40,000 bipolar disorder cases provides new insights into the underlying biology.	Bipolar disorder	41,917 European ancestry cases, 371,549 European ancestry controls	NA	3q13.12	CD47	rs696366-C	0.55	4E-8		1.05295	[1.03-1.07]	Affymetrix, Illumina [7549318] (imputed)	N
1407	chr3	107793708	107793709	rs3804640	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Bipolar disorder vs Tourette's syndrome and other tic disorders (ordinary least squares (OLS))	20,352 bipolar disorder cases, 4,819 Tourette's syndrome cases	NA	3q13.12		rs3804640-?	NR	1E-8		0.0221	NR unit decrease	NR [6254473] (imputed)	N
1407	chr3	107793708	107793709	rs3804640	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls, 20,352 European ancestry cases, 31,358 European ancestry controls	NA	3q13.12	CD47	rs3804640-A	NR	2E-9		1.068	[1.045-1.091]	Illumina [3742365] (imputed)	N
1407	chr3	107793708	107793709	rs3804640	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3q13.12	CD47, IFT57	rs3804640-A	0.533	2E-8		1.06481	[1.04-1.09]	NR [9372253] (imputed)	N
1407	chr3	107800879	107800880	rs7619476	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q13.12	CD47	rs7619476-?		4E-10				Affymetrix, Illumina [NR] (imputed)	N
1407	chr3	107811141	107811142	rs326341	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3q13.12		rs326341-G	0.525	1E-11		0.014	[0.01-0.018] unit increase	Affymetrix [up to 90000000] (imputed)	N
1407	chr3	107811141	107811142	rs326341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q13.12		rs326341-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1407	chr3	107820062	107820063	rs7640424	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q13.12	NR	rs7640424-C	NR	3E-6		0.013	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1407	chr3	107820062	107820063	rs7640424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.12		rs7640424-T	0.3063	1E-13		0.0113	[0.0084-0.0142] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1407	chr3	107820062	107820063	rs7640424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.12	Intergenic	rs7640424-T	0.3063	3E-17	(MTAG)	0.012	[0.0093-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1407	chr3	107820062	107820063	rs7640424	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q13.12	CD47	rs7640424-C	0.689	2E-6		0.015	[0.0089-0.0219] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1407	chr3	107820062	107820063	rs7640424	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q13.12	CD47	rs7640424-C	0.685	5E-6	(EA)	0.015	[0.0086-0.0216] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1407	chr3	107822244	107822245	rs1561029	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.12	NR	rs1561029-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1407	chr3	107822244	107822245	rs1561029	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q13.12	Intergenic	rs1561029-A	0.3762	2E-10	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1407	chr3	107829805	107829806	rs4855621	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q13.12	NR	rs4855621-?	NR	9E-7		0.0083956	[0.005-0.0117] unit decrease	Affymetrix [805426] (imputed)	N
1407	chr3	107832117	107832118	rs2117762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.12	Intergenic	rs2117762-T	0.465	2E-8	(MTAG)	0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1407	chr3	107832117	107832118	rs2117762	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.12	Intergenic	rs2117762-T	0.4648	1E-10	(MTAG)	0.0107	[0.0074-0.014] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1407	chr3	107870834	107870835	rs13082569	29970889	Day FR	2018-07-03	Nat Commun	Elucidating the genetic basis of social interaction and isolation.	Regular attendance at a religious group	66,259 European ancestry cases, 386,043 European ancestry controls	NA	3q13.12	LOC151658, LOC285205, CD47, IFT57, HHLA2, MYH15	rs13082569-C	0.647885	8E-12		0.00523978	[0.0037-0.0067] unit decrease	NR [NR] (imputed)	N
1408	chr3	107888840	107888841	rs36131051	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q13.12	IFT57	rs36131051-T	0.794869	3E-10		0.0107943	[0.0074-0.0141] unit increase	Affymetrix [12370749]	N
1408	chr3	107950891	107950892	rs1289736	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q13.13	NA	rs1289736-T	0.5448	5E-10		0.0106	[0.0073-0.0139] unit increase	NR [~ 27400000] (imputed)	N
1408	chr3	107954890	107954891	rs1870008	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	3q13.13	NR	rs1870008-T	0.599	5E-8		0.00858482	[0.0055-0.0117] unit increase	NR [9732723] (imputed)	N
1408	chr3	107955514	107955515	rs1580173	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q13.13	NR	rs1580173-A	0.5608	2E-8		1.034	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1408	chr3	107997513	107997514	rs6437769	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.13	NR	rs6437769-T	0.581	6E-13		0.00786191	[0.0057-0.01] unit increase	NR [9732723] (imputed)	N
1408	chr3	107997513	107997514	rs6437769	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q13.13	NR	rs6437769-T	0.581	4E-8		0.014214116	[0.0092-0.0193] unit increase	NR [~ 10000000] (imputed)	N
1409	chr3	108023964	108023965	rs2016469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q13.13		rs2016469-A	NR	9E-9		0.0116	[0.0077-0.0155] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1409	chr3	108023964	108023965	rs2016469	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.13	NR	rs2016469-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1409	chr3	108023964	108023965	rs2016469	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.13		rs2016469-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1409	chr3	108031093	108031094	rs1471093	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q13.13	NR	rs1471093-A	0.613	9E-10		0.00921668	[0.0063-0.0122] unit decrease	NR [9732723] (imputed)	N
1409	chr3	108036818	108036819	rs79269403	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.13		rs79269403-G	0.769	1E-15		0.011	[0.009-0.013] unit increase	NR [NR] (imputed)	N
1409	chr3	108039297	108039298	rs114958262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.13		rs114958262-T	0.035	1E-8		0.022	[0.014-0.03] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr3	108065573	108065574	rs35672602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.13	Intergenic	rs35672602-T	0.7573	7E-26	(MTAG)	0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr3	108065573	108065574	rs35672602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q13.13	Intergenic	rs35672602-T	0.7573	5E-14		0.0199	[0.015-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr3	108072800	108072801	rs11711542	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.13	Intergenic	rs11711542-T	0.2419	1E-19	(MTAG)	0.0189	[0.015-0.023] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr3	108077969	108077970	rs9288868	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q13.13		rs9288868-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1409	chr3	108097008	108097009	rs113421805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q13.13	Intergenic	rs113421805-A	0.7683	8E-14		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr3	108099859	108099860	rs7635040	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q13.13	NR	rs7635040-?	NR	4E-7		0.0087215	[0.0054-0.0121] unit decrease	Affymetrix [805426] (imputed)	N
1409	chr3	108103432	108103433	rs3860537	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3q13.13	NR	rs3860537-T	0.22664	4E-8		0.041236416	[0.027-0.056] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1409	chr3	108103432	108103433	rs3860537	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q13.13	Intergenic	rs3860537-T	0.2355	1E-16	(MTAG)	0.0224	[0.017-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr3	108103432	108103433	rs3860537	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3q13.13	Intergenic	rs3860537-T	0.2355	3E-8		0.0186	[0.012-0.025] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1409	chr3	108103432	108103433	rs3860537	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q13.13	NR	rs3860537-T	NR	3E-8		5.542	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1409	chr3	108109991	108109992	rs60785803	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.13	Intergenic	rs60785803-T	0.1911	4E-22	(MTAG)	0.0161	[0.013-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1409	chr3	108112519	108112520	rs75064307	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q13.13	MYH15	rs75064307-T	NR	1E-8		0.0222455	[0.015-0.03] unit increase	Affymetrix [NR]	N
1409	chr3	108112759	108112760	rs2290601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.13		rs2290601-T	0.772	4E-19		0.0149	[0.012-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1409	chr3	108115035	108115036	rs4855559	31748690	Purves KL	2019-11-20	Mol Psychiatry	A major role for common genetic variation in anxiety disorders.	Lifetime anxiety disorder	25,453 European ancestry cases, 58,113 European ancestry controls	6,524 cases, 24001 controls	3q13.13	MYH15	rs4855559-T	0.21	4E-8	(EA)	0.12	[NR] unit decrease	Illumina [NR] (imputed)	N
1409	chr3	108119070	108119071	rs4273371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.13	NA	rs4273371-T	0.5066	4E-12		0.0113	[0.0082-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
1409	chr3	108119070	108119071	rs4273371	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q13.13	NA	rs4273371-T	0.5066	4E-12		0.0113	[0.0082-0.0144] unit decrease	NR [~ 27400000] (imputed)	N
1409	chr3	108119472	108119473	rs111608385	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q13.13	NR	rs111608385-?	NR	6E-6		4.542	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1409	chr3	108119527	108119528	rs55689442	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.13	NR	rs55689442-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1410	chr3	108139427	108139428	rs2399233	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	3q13.13	MYH15	rs2399233-T	0.0875	4E-6	(O'Connor Slope)	0.057	[NR] unit decrease	Illumina [546355]	N
1410	chr3	108148556	108148557	rs1531188	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	3q13.13	NR	rs1531188-C	NR	2E-9		1.0416667		NR [NR] (imputed)	N
1410	chr3	108162361	108162362	rs6798068	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q13.13		rs6798068-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1410	chr3	108226461	108226462	rs78715178	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q13.13	MYH15	rs78715178-A	NR	7E-9		0.0418154	[0.028-0.056] unit increase	Affymetrix [NR]	N
1410	chr3	108237156	108237157	rs115910830	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.13	Intergenic	rs115910830-A	0.0194	1E-9	(MTAG)	0.0298	[0.02-0.039] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1410	chr3	108243550	108243551	rs2603127	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	3q13.13	MYH15	rs2603127-A	0.25	5E-6	(AT levels)	2.79	[1.59-3.99] iu/ml increase	Illumina [472123]	N
1410	chr3	108261728	108261728	rs556234993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q13.13	RP11-381E24.1	rs556234993-CT	0.29093	1E-12		0.018106654	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1410	chr3	108261728	108261728	rs556234993	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q13.13	RP11-381E24.1	rs556234993-CT	0.290956	5E-9		0.014792228	[0.0098-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr3	108279215	108279216	rs2969903	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q13.13	KIAA1524	rs2969903-T	0.233721	5E-9		0.0627696	[0.042-0.084] unit increase	Affymetrix [7288503] (imputed)	N
1411	chr3	108284213	108284214	rs115693355	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.13		rs115693355-A	0.0192	7E-9		0.0309	[0.021-0.041] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1411	chr3	108350099	108350100	rs78107819	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q13.13		rs78107819-T	NR	3E-8		0.0303	[0.02-0.041] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1411	chr3	108359244	108359244	rs561823900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q13.13	DZIP3	rs561823900-CT	0.307945	2E-11		0.01669302	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1411	chr3	108359244	108359244	rs561823900	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3q13.13	DZIP3	rs561823900-CT	0.312	7E-9		0.02321595	[0.015-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1412	chr3	108441443	108441444	rs7618314	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	3q13.13	intergenic	rs7618314-T	0.0829	2E-6	(O'Connor Slope)	0.069	[NR] unit decrease	Illumina [546355]	N
1412	chr3	108441443	108441444	rs7618314	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	3q13.13	intergenic	rs7618314-C	0.083	3E-6	(Continuous PC20)	0.075	[NR] unit decrease	Illumina [546355]	N
1412	chr3	108443334	108443335	rs3902849	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.13	RETNLB	rs3902849-?	NR	5E-6	(fructose; glucose; galactose)	0.17814694	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1412	chr3	108443414	108443415	rs28583049	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q13.13		rs28583049-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1412	chr3	108496814	108496815	rs11302557	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q13.13		rs11302557-T	0.659693	5E-11		0.015279036	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1412	chr3	108504264	108504265	rs2100139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.13	NR	rs2100139-C	0.581364	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
1412	chr3	108504264	108504265	rs2100139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q13.13	NR	rs2100139-C	0.65839	2E-14		0.015201	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1413	chr3	108542959	108542960	rs111352680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q13.13		rs111352680-A	NR	4E-9		0.0592	[0.039-0.079] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1413	chr3	108542959	108542960	rs111352680	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3q13.13	TRAT1	rs111352680-G	0.745	4E-10		1.0638298	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1413	chr3	108613284	108613285	rs73198609	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q13.13	NR	rs73198609-?	NR	2E-7		2022.223	NR unit decrease	Illumina [2379855]	N
1413	chr3	108653831	108653832	rs113872281	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	3q13.13	GUCA1C, MORC1	rs113872281-G	0.17	6E-7	(AA)	2.27	[1.65-3.14]	Affymetrix [at least 730985] (imputed)	N
1414	chr3	108695090	108695091	rs16855073	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.13		rs16855073-C	0.801	2E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1414	chr3	108699509	108699510	rs73200691	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.13	NR	rs73200691-T	0.363	9E-9		0.00644515	[0.0042-0.0086] unit increase	NR [9732723] (imputed)	N
1414	chr3	108703024	108703025	rs2593957	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	3q13.13	MORC1	rs2593957-?	0.40-0.46	2E-6	(Fiber)	1.15	[1.09-1.2]	Affymetrix, Illumina [> 2700000] (imputed)	N
1415	chr3	108851483	108851484	rs4855695	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	3q13.13	MORC1, FLJ22763	rs4855695-?	0.51-0.58	2E-6	(Fiber)	1.14	[1.08-1.20]	Affymetrix, Illumina [> 2700000] (imputed)	N
1415	chr3	108851790	108851791	rs4441659	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of beta-cell function (dietary factor interaction)	820 European ancestry individuals	NA	3q13.13	MORC1, FLJ22763	rs4441659-A	0.122	3E-7	(n-6 PUFA)			Affymetrix [590000]	N
1415	chr3	108865197	108865198	rs73216700	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q13.13	MORC1	rs73216700-G	0.570104	1E-16		0.0164155	[0.013-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1415	chr3	108867704	108867705	rs4855582	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q13.13	MORC1	rs4855582-C	0.570378	8E-9		0.0110991	[0.0073-0.0149] unit decrease	Affymetrix [NR] (imputed)	N
1415	chr3	108875913	108875914	rs2699943	33115937	Cho J	2020-10-28	Thorax	Genome-wide association study of non-tuberculous mycobacterial pulmonary disease.	Non-tuberculous mycobacterial pulmonary disease	403 Korean ancestry cases, 306 Korean ancestry controls	184 Korean ancestry cases, 1680 Korean ancestry controls	3q13.13	NR	rs2699943-C	0.06	3E-6				Illumina [4877242] (imputed)	N
1416	chr3	108984974	108984975	rs73208825	33783297	Zai CC	2021-03-30	World J Biol Psychiatry	Genome-wide association study of suicidal behaviour severity in mood disorders.	Suicide attempt severity in mood disorders	719 European ancestry bipolar disorder cases, 2,787 European ancestry major depressive disorder cases	NA	3q13.13	NR	rs73208825-?	NR	8E-6		4.454	[NR] z score increase	Illumina [6737359] (imputed)	N
1416	chr3	108987094	108987095	rs34050564	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial memory	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q13.13	DPPA2	rs34050564-C	NR	3E-6		0.1983747	[0.12-0.28] unit decrease	Illumina [> 6200000] (imputed)	N
1417	chr3	109128552	109128553	rs12498100	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.13	NR	rs12498100-?	NR	4E-9				Affymetrix [NR]	N
1418	chr3	109204412	109204413	rs769554	21348951	Parsa A	2011-02-01	Clin Transl Sci	Hypertrophy-associated polymorphisms ascertained in a founder cohort applied to heart failure risk and mortality.	Cardiac hypertrophy	851 Old Order Amish individuals	NA	3q13.13	DPPA4	rs769554-?	NR	3E-6	(additive)			Affymetrix [361034]	N
1420	chr3	109454369	109454370	rs6797827	28654678	Mandage R	2017-06-27	PLoS One	Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples.	Epstein-Barr virus copy number in lymphoblastoid cell lines	389 East Asian ancestry individuals, 189 South Asian ancestry individuals, 492 European ancestry individuals, 467 Sub-Saharan African ancestry individuals, 59 African American individuals, 157 Hispanic/Latino individuals	NA	3q13.13	MIR4445, PVRL3-AS1	rs6797827-?	NR	7E-7	(AA and Sub-Saharan African)			NR [at least 880000]	N
1420	chr3	109462399	109462400	rs1164064	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		3q13.13	DPPA4, DPPA2	rs1164064-A	NR	2E-6		0.134	[0.079-0.189] unit increase	Illumina [~ 2500000] (imputed)	N
1420	chr3	109529549	109529550	rs679711	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep depth	2,314 European ancestry individuals	NA	3q13.13	intergenic	rs679711-T	0.43	1E-6		0.1	[0.061-0.139] unit decrease	Illumina [2380486] (imputed)	N
1421	chr3	109615729	109615730	rs4682463	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Pneumonia	40,600 European ancestry cases, 90,039 European ancestry controls	NA	3q13.13	NR	rs4682463-?	NR	4E-6		0.156	[0.089-0.223] unit decrease	Illumina [at least 560000] (imputed)	N
1421	chr3	109634126	109634127	rs66800491	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	3q13.13	PVRL3	rs66800491-G	0.683	4E-44		0.078	[0.067-0.089] unit decrease	Illumina [7428049] (imputed)	N
1422	chr3	109758502	109758503	rs12489590	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.13	NR	rs12489590-?	NR	4E-8				Affymetrix [NR]	N
1422	chr3	109789569	109789570	rs10934011	23725790	Renteria ME	2013-06-03	Twin Res Hum Genet	GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.	DNA methylation (parent-of-origin)	1,024 European ancestry individuals	NA	3q13.13	intergenic	rs10934011-G	0.21	1E-9	(NESPAS CpG08_09)			Illumina [515966]	N
1423	chr3	109927375	109927376	rs13323983	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	3q13.13	AC078918.1, RP11-696F10.1	rs13323983-?	NR	5E-6				Illumina [874956]	N
1423	chr3	109961296	109961297	rs1870801	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.13	DPPA4	rs1870801-?	NR	3E-6	(fructose; glucose; galactose)	0.5715412	[0.33-0.81] unit increase	Affymetrix [at least 2500000] (imputed)	N
1424	chr3	110023485	110023486	rs77903789	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Enterococcaceae abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.13		rs77903789-A	0.0527682	2E-8		0.0601566	[0.039-0.081] unit increase	Illumina [7980478] (imputed)	N
1424	chr3	110044470	110044470	rs61439103	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.13	NR	rs61439103-A	0.04007	2E-8	(TXN)	0.2863	NR unit increase	Illumina [1671387] (imputed)	N
1424	chr3	110081919	110081920	rs35968545	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Nucleus accumbens volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q13.13	NR	rs35968545-?		3E-6				Illumina [4322238] (imputed)	N
1424	chr3	110087702	110087703	rs9824239	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q13.13		rs9824239-T	NR	6E-6		2.107	[1.21-3] unit increase	Illumina [NR] (imputed)	N
1425	chr3	110103125	110103126	rs10511285	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	3q13.13	NECTIN3	rs10511285-T	0.459246	3E-8		5.57	z score decrease	NR [10847151] (imputed)	N
1425	chr3	110151809	110151810	rs6767880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q13.13		rs6767880-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1425	chr3	110152558	110152559	rs11921479	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q13.13		rs11921479-?	NR	1E-8				NR [NR]	N
1425	chr3	110152768	110152769	rs9844095	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q13.13		rs9844095-?	NR	5E-8				NR [NR]	N
1425	chr3	110180718	110180719	rs7638452	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.13	Intergenic	rs7638452-A	0.6104	2E-15	(MTAG)	0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1425	chr3	110184748	110184749	rs12637928	27067015	Smith DJ	2016-04-12	Mol Psychiatry	Genome-wide analysis of over 106 000 individuals identifies 9 neuroticism-associated loci.	Neuroticism	91,370 European ancestry individuals, 15,346 individuals	NA	3q13.13	PVRL3	rs12637928-A	0.49	4E-8		0.077	[0.05-0.104] unit decrease	Affymetrix [7207648] (imputed)	N
1425	chr3	110207582	110207583	rs10511286	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.13	NR	rs10511286-T	0.379775	3E-12		0.0220889	[0.016-0.028] unit decrease	NR [19129689] (imputed)	N
1426	chr3	110245146	110245147	rs56067719	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	3q13.13	NR	rs56067719-A	0.482559	5E-8		5.46	z score increase	NR [10847151] (imputed)	N
1426	chr3	110248673	110248674	rs2221883	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q13.13		rs2221883-?	NR	5E-8				NR [NR]	N
1426	chr3	110254092	110254093	rs9831873	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.13	NR	rs9831873-T	0.609	2E-8		0.00619123	[0.004-0.0084] unit decrease	NR [9732723] (imputed)	N
1426	chr3	110264259	110264260	rs9877235	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.13	Intergenic	rs9877235-T	0.3894	9E-12	(MTAG)	0.0115	[0.0082-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1426	chr3	110271942	110271943	rs1398346	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q13.13	LOC151760	rs1398346-T	0.8668	4E-8		1.0262383		Affymetrix [11880941] (imputed)	N
1426	chr3	110300111	110300112	rs35624867	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q13.13	RNU6ATAC15P	rs35624867-T	0.1203	3E-7		0.0733	[0.045-0.102] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1426	chr3	110300606	110300607	rs11708774	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q13.13	Intergenic	rs11708774-A	0.6149	1E-15		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1426	chr3	110332507	110332508	rs6437923	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q13.13		rs6437923-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1428	chr3	110517942	110517943	rs1462324	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	3q13.13	Intergenic	rs1462324-A		4E-6		0.052	[0.03-0.074] unit increase	Affymetrix, Illumina [up to 17017474] (imputed)	N
1428	chr3	110523639	110523656	rs202066125	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q13.13		rs202066125-C	NR	1E-5		4.4643	[2.53-6.4] unit increase	Illumina [NR] (imputed)	N
1429	chr3	110692753	110692754	rs1462795	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	3q13.13	NR	rs1462795-?	NR	5E-7			[NR]	Illumina [5432814] (imputed)	N
1429	chr3	110711180	110711181	rs4450855	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q13.13	NR	rs4450855-?	NR	6E-6		1000.1357	NR unit increase	Illumina [2379855]	N
1430	chr3	110870789	110870790	rs75754256	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		3q13.13	GMDS	rs75754256-A	0.028	6E-6		1.296	[0.75-1.85] unit increase	Illumina [640625] (imputed)	N
1430	chr3	110880583	110880584	rs184726182	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q13.13	NR	rs184726182-?	NR	9E-6		0.875877	[0.49-1.26] unit increase	NR [13958389] (imputed)	N
1432	chr3	111032911	111032912	rs79738309	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-1000 sp000434555 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.13		rs79738309-A	0.0132573	1E-8		0.382357	[0.25-0.51] unit increase	Illumina [7980478] (imputed)	N
1432	chr3	111032911	111032912	rs79738309	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-1000 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.13		rs79738309-A	0.0132573	8E-9		0.397057	[0.26-0.53] unit increase	Illumina [7980478] (imputed)	N
1432	chr3	111051870	111051871	rs2971365	31991592	Coltell O	2020-01-24	Nutrients	Genome-Wide Association Study for Serum Omega-3 and Omega-6 Polyunsaturated Fatty Acids: Exploratory Analysis of the Sex-Specific Effects and Dietary Modulation in Mediterranean Subjects with Metabolic Syndrome.	Serum polyunsaturated fatty acid concentration x Mediterranean diet adherence interaction in metabolic syndrome	248 Mediterranean individuals with low adherence to Mediterranean diet, 178 Mediterranean individuals with high adherence to Mediterranean diet	NA	3q13.13	intergenic	rs2971365-C	0.313898	7E-6	(omega-3 PUFA)			Illumina [621723]	N
1432	chr3	111108533	111108534	rs7433832	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-302 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.13		rs7433832-G	0.0131137	2E-8		0.548533	[0.36-0.74] unit increase	Illumina [7980478] (imputed)	N
1432	chr3	111108533	111108534	rs7433832	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-302 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.13		rs7433832-G	0.0131137	2E-8		0.508843	[0.33-0.69] unit increase	Illumina [7980478] (imputed)	N
1432	chr3	111110277	111110278	rs7612956	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.13	NR	rs7612956-?	NR	4E-13				Affymetrix [NR]	N
1433	chr3	111166573	111166574	rs1881681	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	3q13.13	intergenic	rs1881681-C	0.88	1E-6		0.363	unit increase	Illumina [~ 6300000] (imputed)	N
1433	chr3	111224924	111224925	rs9828223	31043678	Aterido A	2019-05-02	Pharmacogenomics J	Genetic association between CD96 locus and immunogenicity to anti-TNF therapy in Crohn's disease.	Anti-adalimumab antibody production in response to treatment in Crohn's disease	9 European ancestry cases, 53 European ancestry controls	3 European ancestry cases, 85 European ancestry controls	3q13.13	CD96	rs9828223-A	0.10	2E-9		15.87	[4.38-57.49]	Illumina [540221]	N
1433	chr3	111233238	111233239	rs56238310	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	3q13.13	CD96	rs56238310-C	0.92	1E-7		0.474	unit increase	Illumina [~ 6300000] (imputed)	N
1433	chr3	111257404	111257405	rs1391361	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 4)	3,566 European ancestry individuals	4,680 European ancestry individuals	3q13.13		rs1391361-T	0.317582726	4E-8				Illumina [7417619] (imputed)	N
1434	chr3	111316363	111316364	rs73228199	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	3q13.13	NR	rs73228199-?	NR	1E-6	(AA)	2.7777777	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1435	chr3	111416309	111416310	rs1355767	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	3q13.2	PLCXD2	rs1355767-A	NR	1E-6		0.25	[0.15-0.35] unit decrease	NR [5896100] (imputed)	N
1435	chr3	111423128	111423129	rs4450776	20125193	Cirulli ET	2010-02-03	Eur J Hum Genet	Common genetic variation and performance on standardized cognitive tests.	Cognitive performance	Up to 813 European ancestry individuals, up to 167 East Asian ancestry individuals, up to 7 Hispanic/Latin American individuals, up to 74 South Asian ancestry individuals	NA	3q13.2	PHLDB2, PLCXD2	rs4450776-?	NR	5E-6	(PC1)			Illumina [up to 563855]	N
1435	chr3	111468098	111468099	rs4284954	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q13.2	NR	rs4284954-?	NR	8E-9				Illumina [at least 7383741] (imputed)	N
1435	chr3	111477347	111477348	rs6792493	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3q13.2	PLCXD2	rs6792493-?	0.41200000000000003	1E-14		1.03	[1.02-1.04]	Affymetrix, Illumina [8494288] (imputed)	N
1435	chr3	111480945	111480946	rs9868898	25557950	Alonso A	2014-12-31	Gastroenterology	Identification of risk loci for Crohn's disease phenotypes using a genome-wide association study.	Crohn's disease-related phenotypes	up to 1,090 Southern European ancestry Crohn's disease cases	up to 1,296 Southern European ancestry Crohn's disease cases	3q13.2	PHLDB2	rs9868898-G	0.16	2E-6	(Perianal disease)	1.49	[1.26-1.76]	Illumina [539846]	N
1435	chr3	111500001	111500002	rs28675079	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	3q13.2	PLCXD2	rs28675079-G	0.8133	8E-11		0.1444	[0.1-0.19] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1435	chr3	111513719	111513720	rs6438013	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q13.2		rs6438013-T	0.3183	4E-8		0.1289591	[0.082-0.176] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1435	chr3	111513719	111513720	rs6438013	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q13.2		rs6438013-T	0.3183	2E-13		0.10958368	[0.081-0.139] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1435	chr3	111513719	111513720	rs6438013	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q13.2	NR	rs6438013-T	0.337	7E-6		0.125	mmHg decrease	Illumina [242296]	N
1436	chr3	111554425	111554426	rs10804493	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3q13.2	PHLDB2, PLCXD2	rs10804493-A	0.651	2E-15		1.06	[1.04-1.07]	Illumina [34740186] (imputed)	N
1436	chr3	111556032	111556033	rs114967053	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PLCXD2	rs114967053-?	NR	6E-9	(female)	0.565915	[NR] unit increase	Affymetrix [NR] (imputed)	N
1436	chr3	111587244	111587245	rs56343172	26151496	Chen PL	2015-07-07	Nat Commun	Genetic determinants of antithyroid drug-induced agranulocytosis by human leukocyte antigen genotyping and genome-wide association study.	Thionamide-induced agranulocytosis in Graves' disease	21 East Asian ancestry cases with agranulocytosis, 662 East Asian ancestry cases without agranulocytosis	21 East Asian ancestry cases with agranulocytosis, 546 East Asian ancestry cases without agranulocytosis	3q13.2	HLA	rs56343172-T	0.031	8E-8	(trend)	5.15	[2.65-10.01] (allelic)	Affymetrix [522980]	N
1436	chr3	111587878	111587879	rs17490701	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q13.2	PHLDB2	rs17490701-G	0.86	5E-11		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr3	111592176	111592176	rs397874511	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3q13.2		rs397874511-GT	NR	2E-11		0.0937	[0.066-0.121] unit decrease	Affymetrix, Illumina [25830072] (imputed)	N
1436	chr3	111592837	111592838	rs73228543	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q13.2	PHLDB2	rs73228543-G	0.85	3E-11	(EA)	1.07	[1.05-1.1]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1436	chr3	111593568	111593569	rs111821448	33179336	Syreeni A	2020-11-11	J Intern Med	Genome-wide search for genes affecting the age at diagnosis of type 1 diabetes.	Type 1 diabetes (age at diagnosis)	12,539 European ancestry individuals	NA	3q13.2	ABHD10	rs111821448-C	0.972	5E-6		0.164	[0.093-0.235] unit increase	Affymetrix, Illumina [7374092] (imputed)	N
1436	chr3	111628733	111628734	rs7653069	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q13.2		rs7653069-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1436	chr3	111630786	111630787	rs16858828	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3q13.2	PHLDB2	rs16858828-C	0.18	2E-8		0.9	[0.61-1.19] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1436	chr3	111637815	111637816	rs16858868	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q13.2	NR	rs16858868-?	NR	5E-13				Illumina [at least 7383741] (imputed)	N
1436	chr3	111643560	111643561	rs2137897	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q13.2	PHLDB2	rs2137897-T	0.2137	7E-17		0.6482	[0.5-0.8] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1437	chr3	111678632	111678633	rs13062225	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3q13.2	NR	rs13062225-?	NR	2E-6		0.38	[0.33-0.43]	Illumina [539000] (imputed)	N
1437	chr3	111681334	111681335	rs698360	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q13.2		rs698360-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1437	chr3	111719329	111719330	rs7639791	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.2	ABHD10	rs7639791-?	NR	6E-6	(inositol)	0.19474614	[0.11-0.28] unit increase	Affymetrix [at least 2500000] (imputed)	N
1437	chr3	111792593	111792594	rs16859140	24478790	Lee JH	2014-01-17	Front Genet	Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.	Telomere length	4,829 European ancestry individuals from 586 families with exceptional longevity	NA	3q13.2	TMPRSS7	rs16859140-C	0.282	5E-6			[NR]	Illumina [9250000] (imputed)	N
1438	chr3	111819523	111819524	rs12053863	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	3q13.2		rs12053863-?	NR	7E-7		0.255	[0.16-0.35] unit decrease	Illumina [5082878] (imputed)	N
1438	chr3	111830303	111830304	rs79754744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q13.2	C3orf52	rs79754744-G	0.031537	2E-13		0.046480175	[0.034-0.059] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr3	111830303	111830304	rs79754744	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q13.2	C3orf52	rs79754744-G	0.03154	2E-14		0.048528645	[0.036-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1438	chr3	111840512	111840513	rs7649379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.2		rs7649379-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1438	chr3	111857568	111857569	rs6803848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q13.2	SLC9C1, RP11-757F18.5	rs6803848-A	0.0298	8E-11		0.06877902	[0.048-0.09] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1438	chr3	111857568	111857569	rs6803848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q13.2	SLC9C1, RP11-757F18.5	rs6803848-A	0.0298	1E-9		0.06413215	[0.043-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1438	chr3	111857568	111857569	rs6803848	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q13.2	SLC9C1, RP11-757F18.5	rs6803848-A	0.0298	1E-9		0.06441027	[0.044-0.085] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1439	chr3	112027834	112027835	rs1879514	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD200	5,363 Icelandic ancestry individuals	NA	3q13.2		rs1879514-G	0.2431	3E-23		0.210717	[0.17-0.25] unit decrease	Illumina [7506463] (imputed)	N
1439	chr3	112029700	112029701	rs6808365	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.2	CD200	rs6808365-T	0.74484375	1E-17	(CD200, 5112_73_3)	0.23450719	[0.18-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1439	chr3	112052926	112052927	rs9868582	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q13.2		rs9868582-T	NR	1E-21		0.0157	[0.013-0.019] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1439	chr3	112052926	112052927	rs9868582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q13.2	CD200	rs9868582-T	0.452126	3E-37		0.02842013	[0.024-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr3	112052926	112052927	rs9868582	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q13.2	CD200	rs9868582-T	0.452095	6E-25		0.023061503	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1439	chr3	112052926	112052927	rs9868582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.2		rs9868582-?	NR	1E-35				NR [~ 8900000] (imputed)	N
1439	chr3	112055792	112055793	rs4682103	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	3q13.2	CD200	rs4682103-A	0.471364	1E-8		0.062296454	[0.041-0.084] unit decrease	Affymetrix [7260263] (imputed)	N
1439	chr3	112055792	112055793	rs4682103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.2	NR	rs4682103-G	0.575669	5E-34				Affymetrix, Illumina [19872809] (imputed)	N
1439	chr3	112056413	112056414	rs7619941	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD200	5,363 Icelandic ancestry individuals	NA	3q13.2		rs7619941-A	0.06754	1E-18		0.32637	[0.25-0.4] unit decrease	Illumina [7506463] (imputed)	N
1439	chr3	112059767	112059768	rs1131199	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q13.2	NR	rs1131199-G	0.529533	1E-35		0.024714	[0.021-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1440	chr3	112071412	112071413	rs62264129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q13.2	CD200	rs62264129-T	0.2964	4E-14		0.02976251	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr3	112071412	112071413	rs62264129	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q13.2	CD200	rs62264129-T	0.2964	2E-14		0.03005374	[0.022-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr3	112074146	112074147	rs9990215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q13.2	CD200	rs9990215-A	0.4418	1E-14		0.02764072	[0.021-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1440	chr3	112074146	112074147	rs9990215	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q13.2	CD200	rs9990215-A	0.4418	2E-15		0.02852072	[0.021-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr3	112074607	112074608	rs9990220	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q13.2	CD200	rs9990220-T	0.4416	2E-16		0.02956545	[0.023-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1440	chr3	112103918	112103919	rs1565186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q13.2		rs1565186-T	0.232993	2E-13		0.01969117	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr3	112108302	112108303	rs74848318	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	3q13.2	NR	rs74848318-?	NR	2E-6		0.3827	[0.22-0.54] unit increase	Illumina [at least 560000] (imputed)	N
1440	chr3	112147680	112147681	rs74562885	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q13.2		rs74562885-C	0.070962	2E-14		0.033333927	[0.025-0.042] unit increase	Affymetrix [93095623] (imputed)	N
1440	chr3	112150012	112150013	rs184904296	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3q13.2	CD200, BTLA	rs184904296-A	0.01	6E-9	(EA)	0.8423	[0.56-1.12] unit increase	Illumina [~ 9000000] (imputed)	N
1441	chr3	112198040	112198041	rs114092838	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.2		rs114092838-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1441	chr3	112269286	112269287	rs2705520	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q13.2	ATG3	rs2705520-?	NR	2E-6				Affymetrix [786195]	N
1441	chr3	112304242	112304243	rs1994712	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.2		rs1994712-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1441	chr3	112315714	112315715	rs145944228	30843173	Popovic M	2019-03-07	J Endocrinol Invest	Genome-wide meta-analysis identifies novel loci associated with free triiodothyronine and thyroid-stimulating hormone.	Triiodothyronine levels and thyroxine levels	Up to 1,729 Croatian, Korculan (founder/genetic isolate) and Vis (founder/genetic isolate) individuals	NA	3q13.2	CCDC80	rs145944228-A	0.02	4E-6		0.025	[0.014-0.036] unit increase	Illumina [7411206] (imputed)	N
1441	chr3	112325676	112325677	rs78125721	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	3q13.2	CCDC80	rs78125721-?		5E-7	(French Canadians)	4.9735656		Illumina [7614484] (imputed)	N
1441	chr3	112328628	112328628	rs146917711	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3q13.2		rs146917711-?	NR	4E-6	(mucinous_all)	2.33		Illumina [11595112] (imputed)	N
1442	chr3	112355268	112355269	rs75755325	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q13.2		rs75755325-T	0.333325	2E-15		0.0173119	[0.013-0.022] unit increase	Illumina [13479295] (imputed)	N
1442	chr3	112355268	112355269	rs75755325	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.2	CCDC80	rs75755325-?	NR	1E-15		0.02470536	[0.019-0.031] unit increase	Illumina [27896057] (imputed)	N
1442	chr3	112376307	112376308	rs12634229	23042114	Hirota T	2012-10-07	Nat Genet	Genome-wide association study identifies eight new susceptibility loci for atopic dermatitis in the Japanese population.	Atopic dermatitis	1,472 Japanese ancestry cases, 7,971 Japanese ancestry controls	1,856 Japanese ancestry cases, 7,021 Japanese ancestry controls	3q13.2	CCDC80, LOC100630917	rs12634229-G	0.327	2E-19		1.29	[1.22-1.37]	Illumina [606164]	N
1442	chr3	112377616	112377617	rs56302621	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	3q13.2		rs56302621-?	NR	9E-13		0.82	[0.77-0.86]	Illumina [5170515] (imputed)	N
1442	chr3	112391173	112391174	rs1249910	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	3q13.2	NR	rs1249910-?	NR	8E-6	(dominant)	1.3888888	[1.19-1.61]	Affymetrix [NR]	N
1442	chr3	112391173	112391174	rs1249910	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	up to 1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	NA	3q13.2	NR	rs1249910-?	0.35	1E-6	(African American, dominant)	2.0408163	[1.54-2.78]	Affymetrix [NR]	N
1442	chr3	112394028	112394029	rs75024669	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Atopic dermatitis	2,385 Japanese ancestry cases, 209,651 Japanese ancestry controls	NA	3q13.2		rs75024669-C	0.328563499	2E-12		1.2705826	[1.188956631-1.357812297]	Illumina [8919992] (imputed)	N
1442	chr3	112395038	112395039	rs72943976	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls	NA	3q13.2		rs72943976-?	NR	3E-14		1.25	[1.18-1.32]	Illumina [9900441] (imputed)	N
1442	chr3	112395840	112395841	rs12637953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	6,224 European ancestry cases, 475,075 European ancestry controls, 4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	3q13.2		rs12637953-T	NR	4E-14		0.1805	[0.13-0.23] unit increase	Affymetrix, Illumina [25843389] (imputed)	N
1442	chr3	112400096	112400097	rs12630906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atopic dermatitis	4,296 East Asian ancestry cases, 163,807 East Asian ancestry controls	NA	3q13.2		rs12630906-T	0.328614952	4E-14		0.19780932	[0.15-0.25] unit increase	Illumina [13428180] (imputed)	N
1442	chr3	112416001	112416002	rs147714697	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3q13.2		rs147714697-G	NR	2E-6		0.87669		Affymetrix, Illumina [62056310] (imputed)	N
1442	chr3	112437046	112437047	rs6788567	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	3q13.2	NR	rs6788567-?	NR	2E-6	(EA)			Illumina [1735619]	N
1442	chr3	112440003	112440004	rs2171564	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3q13.2	Intergenic	rs2171564-G	NR	4E-6		0.0161363	[0.0093-0.023] unit decrease	Illumina [13519193] (imputed)	N
1442	chr3	112440947	112440948	rs9863500	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	3q13.2	LOC101929694	rs9863500-A	0.4917	4E-6		0.0694618	NR unit decrease	Illumina [560351]	N
1442	chr3	112443736	112443737	rs7614601	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3q13.2	Intergenic	rs7614601-G	NR	2E-6		0.0177403	[0.01-0.025] unit decrease	Illumina [13520550] (imputed)	N
1443	chr3	112485221	112485222	rs1154275	28108127	Eitel I	2017-01-15	Int J Cardiol	Genome-wide association study in takotsubo syndrome - Preliminary results and future directions.	Takotsubo syndrome	96 European ancestry cases, 475 controls	NA	3q13.2	NR	rs1154275-G	0.43	9E-6		2.09	NR	NR [at least 498281] (imputed)	N
1443	chr3	112508178	112508179	rs7614127	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to progression)	662 European ancestry individuals	NA	3q13.2	NR	rs7614127-A	0.501515	7E-6				Illumina [5378266] (imputed)	N
1443	chr3	112525646	112525647	rs9880045	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q13.2	RP11-180K7.1	rs9880045-T	0.0064	5E-6		1.0621	[0.61-1.52] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1443	chr3	112535718	112535719	rs11918738	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	High density lipoprotein cholesterol levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q13.2	CD200R1L	rs11918738-A	0.22	6E-7	(African American)	0.14	[0.081-0.199] unit decrease	Illumina [up to 13042663] (imputed)	N
1443	chr3	112556297	112556298	rs56206000	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q13.2		rs56206000-?	NR	5E-11				Affymetrix [NR] (imputed)	N
1443	chr3	112556392	112556393	rs16860145	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q13.2		rs16860145-?	NR	5E-11				Affymetrix [NR] (imputed)	N
1443	chr3	112558983	112558984	rs59292601	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q13.2		rs59292601-?	NR	5E-11				Affymetrix [NR] (imputed)	N
1443	chr3	112565086	112565087	rs6780406	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD200R1	5,359 Icelandic ancestry individuals	NA	3q13.2		rs6780406-G	0.353	4E-22		0.190273	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1443	chr3	112570918	112570919	rs9860428	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis (rheumatoid factor and/or anti-cyclic citrullinated peptide seropositive)	357 African admixed and non-African admixed Arab ancestry cases, 352 African admixed and non-African admixed Arab ancestry controls	234 Arab ancestry cases, 225 Arab ancestry controls	3q13.2	CD200R1	rs9860428-C	0.38	4E-7		1.6	[1.33-1.92]	Illumina [7000653] (imputed)	N
1443	chr3	112570918	112570919	rs9860428	28118524	Saxena R	2017-01-24	Arthritis Rheumatol	A Multinational Arab Genome-Wide Association Study Identifies New Genetic Associations for Rheumatoid Arthritis.	Rheumatoid arthritis	97 African admixed Arab ancestry cases, 410 non-African admixed Arab ancestry cases, 4 Arab ancestry cases, 56 African admixed Arab ancestry controls, 290 non-African admixed Arab ancestry controls, 6 Arab ancestry controls	283 Arab ancestry cases, 221 Arab ancestry controls	3q13.2	CD200R1	rs9860428-C	0.38	5E-8		1.59	[1.35-1.88]	Illumina [7000653] (imputed)	N
1443	chr3	112572647	112572648	rs11717778	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q13.2	NR	rs11717778-G	0.6585	6E-11		1.0418837	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1443	chr3	112578457	112578458	rs114341625	31169883	Pott J	2019-06-06	J Clin Endocrinol Metab	Genetic association study of eight steroid hormones and implications for sexual dimorphism of coronary artery disease.	Cortisol levels (plasma)	4,301 European ancestry men, 3,366 European ancestry women	NA	3q13.2	NR	rs114341625-A	0.018	6E-9		0.128447	[0.085-0.172] unit decrease	Affymetrix [up to 8900000] (imputed)	N
1443	chr3	112587491	112587492	rs9814893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q13.2	intergenic	rs9814893-T	0.3875	4E-10		0.02297183	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1443	chr3	112587491	112587492	rs9814893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q13.2	intergenic	rs9814893-T	0.3873	3E-12		0.02545257	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1443	chr3	112587491	112587492	rs9814893	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q13.2	intergenic	rs9814893-T	0.3875	1E-11		0.02498381	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1444	chr3	112591391	112591392	rs6791672	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.2	CD200R1	rs6791672-A	0.591	3E-12	(Cell surface glycoprotein CD200 receptor 1, CD200R1.5103.30.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1444	chr3	112594786	112594786	rs551795552	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q13.2		rs551795552-?	NR	9E-11				Affymetrix [NR] (imputed)	N
1444	chr3	112623549	112623550	rs13323006	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q13.2		rs13323006-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1444	chr3	112634261	112634262	rs144301783	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.2	CD200R1	rs144301783-G	0.536875	9E-17	(CD200R1, 5103_30_3)	0.20350191	[0.16-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1444	chr3	112641211	112641212	rs79834152	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q13.2	CD200R1	rs79834152-C	0.0293	2E-30	(CD200R1)	1.83964	[1.53-2.15] unit increase	Illumina [8683751] (imputed)	N
1444	chr3	112647987	112647988	rs9868053	34785669	Grosche S	2021-11-16	Nat Commun	Rare variant analysis in eczema identifies exonic variants in DUSP1, NOTCH4 and SLC9A4.	Eczema	20,016 European ancestry cases, 380,433 European ancestry controls	NA	3q13.2		rs9868053-T	0.5331	4E-9		0.94		Affymetrix, Illumina [9397031] (imputed)	N
1444	chr3	112648963	112648964	rs35297201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q13.2	CD200R1	rs35297201-T	0.472914	9E-23		0.021835772	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1444	chr3	112650419	112650420	rs7622812	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q13.2	CD200R1	rs7622812-T	0.5	3E-16	(CD200R1)	0.41928	[0.32-0.52] unit decrease	Illumina [8683751] (imputed)	N
1444	chr3	112650430	112650431	rs7622814	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q13.2	CD200R1	rs7622814-T	0.46	4E-10				NR [> 9500000] (imputed)	N
1444	chr3	112650430	112650431	rs7622814	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q13.2	CD200R1	rs7622814-T	0.460336	1E-8		1.0350466	[1.02293087678879-1.04730582028949]	NR [9572556] (imputed)	N
1444	chr3	112677528	112677529	rs12494693	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q13.2	CD200R1	rs12494693-A	0.476983	2E-22		0.021504436	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1444	chr3	112677528	112677529	rs12494693	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.2		rs12494693-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1444	chr3	112681584	112681585	rs1488193	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	3q13.2	CD200R1	rs1488193-G	NR	6E-6	(Economic policy)	0.23	[0.13-0.33] unit decrease	Illumina [628922]	N
1444	chr3	112686074	112686075	rs1032726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q13.2	CD200R1	rs1032726-C	0.467	3E-10		0.02252631	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1444	chr3	112686074	112686075	rs1032726	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q13.2	CD200R1	rs1032726-C	0.467	1E-11		0.02419425	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1445	chr3	112792677	112792678	rs6767661	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometriosis (MTAG)	645 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q13.2	Intergenic	rs6767661-?		8E-6		1.0309278	[1.02-1.05]	Illumina [7645193] (imputed)	N
1445	chr3	112810667	112810668	rs2633498	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.2	NR	rs2633498-A	0.0122	3E-8	(AZGP1)	0.03458	NR unit increase	Illumina [1671387] (imputed)	N
1445	chr3	112822321	112822322	rs9811423	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	3q13.2	RP11-572M11.4	rs9811423-?	0.47	4E-6		1.28	[NR]	Illumina [1847262] (imputed)	N
1445	chr3	112827384	112827385	rs2700198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q13.2		rs2700198-C	NR	2E-21		0.0128	[0.01-0.015] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1445	chr3	112828277	112828278	rs2245698	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q13.2	NR	rs2245698-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1445	chr3	112829441	112829442	rs2700201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.2		rs2700201-?	NR	3E-24				NR [~ 8900000] (imputed)	N
1445	chr3	112841568	112841569	rs2700204	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to valproic acid in focal epilepsy	202 European ancestry cases, 528 European ancestry controls	NA			rs2700204-?	NR	5E-6				Illumina [NR] (imputed)	N
1445	chr3	112847044	112847045	rs2613954	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	3q13.2	RP11-572M11.4	rs2613954-T	0.885842	1E-6		0.038148	[0.023-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1445	chr3	112850958	112850959	rs141898423	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q13.2	NR	rs141898423-?	NR	7E-6		0.53925	[0.3-0.77] unit increase	NR [13958389] (imputed)	N
1445	chr3	112851906	112851907	rs34631041	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q13.2	RP11-572M11.4	rs34631041-T	0.492	7E-6		0.0305	[0.017-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1446	chr3	112860779	112860780	rs2613964	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral density (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.2	NR	rs2613964-G	0.348	6E-6		0.165651	[0.094-0.237] unit decrease	Illumina [~ 6600000] (imputed)	N
1446	chr3	112860779	112860780	rs2613964	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.2	NR	rs2613964-G	0.348	1E-6		0.153	[0.092-0.214] unit decrease	Illumina [~ 6600000] (imputed)	N
1446	chr3	112860779	112860780	rs2613964	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (spine)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q13.2	NR	rs2613964-G	0.346	5E-7	(Males)	0.225056	[0.14-0.31] unit decrease	Illumina [~ 6600000] (imputed)	N
1446	chr3	112875948	112875949	rs11923603	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.2	LOC101929717	rs11923603-?	NR	4E-13		0.022963969	[0.017-0.029] unit increase	Illumina [27896057] (imputed)	N
1446	chr3	112903887	112903888	rs13086367	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3q13.2	BOC	rs13086367-A	0.5262	7E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1446	chr3	112905277	112905278	rs1499901	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	UBA6382 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.2		rs1499901-C	0.323421	4E-8		0.0494792	[0.032-0.067] unit decrease	Illumina [7980478] (imputed)	N
1446	chr3	112911614	112911615	rs2399472	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Allergic rhinitis	13,936 European ancestry cases, 42,701 European ancestry controls	NA	3q13.2		rs2399472-T	0.926744	2E-8		1.17		Affymetrix [15644656] (imputed)	N
1446	chr3	112916202	112916203	rs1846594	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	3q13.2	LOC101929717, BOC	rs1846594-A	0.5589	4E-9		1.49	[1.29-1.71]	Affymetrix [up to 27494467] (imputed)	N
1446	chr3	112916917	112916918	rs12635946	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	3q13.2	NR	rs12635946-C	0.62	1E-11		1.08	[1.06-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1446	chr3	112927614	112927615	rs148643978	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q13.2	BOC	rs148643978-A	0.0212372528403689	5E-6	(F_Acidaminococcaceae_RNT)	0.473094	[0.27-0.68] unit increase	Illumina [7711310] (imputed)	N
1446	chr3	112930904	112930905	rs79231157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	3q13.2		rs79231157-G	NR	5E-10		0.0592	[0.041-0.078] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1446	chr3	112936245	112936246	rs1466848	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	3q13.2	BOC	rs1466848-?	NR	3E-7	(Asian)	1.819	[0.66-2.97] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1446	chr3	112936245	112936246	rs1466848	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (2df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	3q13.2	BOC	rs1466848-?	NR	1E-9		0.6765	[0.19-1.16] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1446	chr3	112936245	112936246	rs1466848	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x long total sleep time interaction (1df test)	2,913 African American long sleepers, 358 Chinese ancestry long sleepers, 110 Asian ancestry long sleepers, 7,583 European ancestry long sleepers, 1,036 Hispanic/Latino long sleepers, up to 11,862 African American controls, 1,432 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,744 European ancestry controls, 4,066 Hispanic/Latino controls	at least 214 African American long sleepers, 616 East Asian ancestry long sleepers, up to 6,657 European ancestry long sleepers, 2,457 Hispanic long sleepers, at least 913 African American controls, 2,517 East Asian ancestry controls, up to 26,868 European ancestry controls, 9,870 Hispanic controls	3q13.2	BOC	rs1466848-?	NR	5E-6		3.183	[1.82-4.55] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1446	chr3	112951528	112951529	rs73235136	31417091	Kou I	2019-08-15	Nat Commun	Genome-wide association study identifies 14 previously unreported susceptibility loci for adolescent idiopathic scoliosis in Japanese.	Adolescent idiopathic scoliosis	5,004 Japanese ancestry female cases, 33,679 Japanese ancestry female controls	NA	3q13.2	BOC	rs73235136-C	0.465692	3E-9		1.15	[1.10-1.20]	Illumina [9332516] (imputed)	N
1446	chr3	112958323	112958324	rs10511323	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.2		rs10511323-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1446	chr3	112973954	112973955	rs73235147	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.2	BOC	rs73235147-A	0.8325	1E-13	(BOC, 4328_2_2)	0.2405612	[0.18-0.3] unit decrease	Illumina [> 1000000] (imputed)	N
1447	chr3	112991116	112991117	rs12631733	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.2	BOC	rs12631733-?	NR	3E-9		0.017105715	[0.011-0.023] unit decrease	Illumina [27896057] (imputed)	N
1447	chr3	112995073	112995074	rs775227	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	3q13.2	BOC	rs775227-?	NR	2E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1447	chr3	112998089	112998090	rs3856720	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BOC	5,360 Icelandic ancestry individuals	NA	3q13.2		rs3856720-C	0.1653	2E-20		0.231252	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
1447	chr3	112999559	112999560	rs72942485	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3q13.2	NR	rs72942485-G	0.9781	2E-8		1.19	[1.12-1.26]	Affymetrix, Illumina [16900397] (imputed)	N
1447	chr3	113004092	113004093	rs41271357	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q13.2		rs41271357-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1447	chr3	113025287	113025288	rs75447378	33075057	Li X	2020-10-19	PLoS Genet	Automated feature extraction from population wearable device data identified novel loci associated with sleep and circadian rhythms.	Sleep (1/2-day periodicity)	90,515 individuals	NA	3q13.2	CFAP44	rs75447378-C	NR	4E-9		0.544	[0.36-0.73] unit increase	NR [11024754] (imputed)	N
1447	chr3	113030304	113030305	rs111640200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q13.2		rs111640200-G	NR	7E-10		0.0413	[0.028-0.054] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1447	chr3	113046639	113046640	rs13064411	25089948	Theusch E	2014-10-01	Pharmacogenet Genomics	Ancestry and other genetic associations with plasma PCSK9 response to simvastatin.	Response to simvastatin treatment (PCSK9 protein level change)	562 European ancestry individuals	287 African American individuals	3q13.2	WDR52	rs13064411-G	0.153	8E-8	(EA)	0.142	[NR] unit increase	Illumina [570422]	N
1447	chr3	113077335	113077336	rs11715515	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Growth-regulated protein alpha levels	3,505 Finnish ancestry individuals	NA	3q13.2	NR	rs11715515-C		7E-6		0.1717	[0.097-0.247] SD units increase	NR [10700000] (imputed)	N
1448	chr3	113127990	113127991	rs16845107	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	3q13.2	WDR52	rs16845107-?		6E-7		1.9069412	[NR]	Affymetrix [492217] (imputed)	N
1448	chr3	113159740	113159741	rs9815835	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q13.2		rs9815835-?	NR	8E-6		0.924758	[0.89-0.96]	NR [680312]	N
1449	chr3	113271056	113271057	rs7620803	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q13.2	SIDT1	rs7620803-T	NR	7E-7		1.0648	NR	Affymetrix, Illumina [8278136] (imputed)	N
1449	chr3	113275623	113275624	rs7611694	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3q13.2	NR	rs7611694-A	NR	1E-8		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1449	chr3	113275623	113275624	rs7611694	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q13.2	NR	rs7611694-A	0.58	5E-25		1.09	[1.07-1.10]	Illumina [20370935] (imputed)	N
1449	chr3	113275623	113275624	rs7611694	23535732	Eeles RA	2013-04-01	Nat Genet	Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.	Prostate cancer	11,085 European ancestry cases, 11,463 European ancestry controls	19,662 European ancestry cases, 19,715 European ancestry controls	3q13.2	WDR52-AS1, ATP6V1A, BOC, KIAA2018, MIR4446, NAA50, SIDT1, SPICE1, WDR52, WDR52-AS	rs7611694-A	0.59	4E-13		1.1	[1.08-1.14]	Illumina [~ 2600000] (imputed)	N
1449	chr3	113282325	113282326	rs6769767	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q13.2		rs6769767-A	0.45	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1449	chr3	113282325	113282326	rs6769767	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q13.2	NR	rs6769767-A	0.4277	7E-9				NR [9056863] (imputed)	N
1449	chr3	113284148	113284149	rs12629813	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q13.2	NR	rs12629813-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1449	chr3	113284491	113284492	rs7645464	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.2	NR	rs7645464-A	NR	3E-10		0.02	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1449	chr3	113288429	113288430	rs11929640	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q13.2	NR	rs11929640-G	0.6454	9E-9		0.0245	[0.016-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1449	chr3	113290467	113290468	rs13092825	23259602	Wang X	2012-12-21	BMC Oral Health	Genome-wide association scan of dental caries in the permanent dentition.	Dental caries	1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals	NA	3q13.2	SIDT1	rs13092825-?	NR	2E-6	(Comparatively Younger)			Affymetrix, Illumina [~ 1400000] (imputed)	N
1449	chr3	113290792	113290793	rs4682495	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.2		rs4682495-C	0.45	3E-15		7.91	z score increase	Affymetrix [9061022] (imputed)	N
1449	chr3	113292636	113292637	rs28674622	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q13.2		rs28674622-C	0.46	2E-12		7.03	z score increase	Affymetrix [9061022] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q13.2		rs2271494-T	NR	2E-18		0.0206	[0.016-0.025] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q13.2	NR	rs2271494-T	0.4193	2E-15				NR [9056863] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q13.2	NR	rs2271494-T	0.4164	9E-17		0.001836	[0.0014-0.0023] unit increase	Affymetrix [NR] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	3q13.2	NR	rs2271494-A	0.582340487	3E-8		1.1007563	[1.06-1.14]	Affymetrix, Illumina [20400945] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q13.2	NR	rs2271494-A	NR	2E-31		1.081	[1.07-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.2	NR	rs2271494-T	0.503944	2E-11				Affymetrix, Illumina [24588908] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	3q13.2		rs2271494-A	NR	1E-9		1.0944	NR	Affymetrix [7846216] (imputed)	N
1449	chr3	113300182	113300183	rs2271494	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q13.2	SIDT1	rs2271494-T	0.4164	3E-10		0.02304263	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1449	chr3	113304780	113304781	rs9827928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3q13.2		rs9827928-G	NR	7E-13		0.0922	[0.067-0.117] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1449	chr3	113308411	113308412	rs12489267	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.2	NR	rs12489267-A	0.562045	1E-25				Affymetrix, Illumina [17210439] (imputed)	N
1449	chr3	113309148	113309149	rs6808932	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3q13.2	SIDT1	rs6808932-?		2E-12				Illumina [5041948] (imputed)	N
1449	chr3	113309148	113309149	rs6808932	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q13.2	SIDT1	rs6808932-C	0.38677	5E-19		0.020307735	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1449	chr3	113309148	113309149	rs6808932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q13.2	NR	rs6808932-C	0.388615	5E-14		0.014139	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1449	chr3	113309148	113309149	rs6808932	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q13.2	NR	rs6808932-A	0.61262	7E-28		0.021403	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1449	chr3	113322005	113322006	rs17325765	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.2	KIAA2018	rs17325765-?	NR	6E-6	(alpha glycerophosphocholine)	0.8617724	[0.49-1.23] unit increase	Affymetrix [at least 2500000] (imputed)	N
1449	chr3	113361848	113361849	rs182381821	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q13.2	USF3	rs182381821-T	0.9948	1E-6		0.3799	[0.23-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1449	chr3	113361848	113361849	rs182381821	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q13.2	USF3	rs182381821-T	0.9948	1E-6		0.3769	[0.22-0.53] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1449	chr3	113370009	113370010	rs1026364	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Femoral neck bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3q13.2	KIAA2018	rs1026364-T	0.37	4E-10		0.03	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1450	chr3	113398641	113398642	rs73226528	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q13.2	KIAA2018	rs73226528-C	0.19288499999999997	1E-8		0.022044	[0.014-0.03] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1450	chr3	113403217	113403218	rs115073686	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q13.2		rs115073686-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1450	chr3	113430598	113430599	rs11711311	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q13.31	NR	rs11711311-G	0.396079672452158	4E-7	(IGP47)	0.1632	[0.1-0.227] unit decrease	Illumina [~ 2500000] (imputed)	N
1450	chr3	113477227	113477228	rs73226558	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs73226558-T	0.01742	2E-8	(ACSS3)	0.1688	NR unit increase	Illumina [1671387] (imputed)	N
1450	chr3	113501419	113501420	rs2465281	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q13.31		rs2465281-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1451	chr3	113599586	113599587	rs2632255	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,366 Icelandic ancestry individuals	NA	3q13.31		rs2632255-A	0.3075	1E-35		0.255467	[0.22-0.3] unit increase	Illumina [7506463] (imputed)	N
1451	chr3	113614235	113614236	rs73230239	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q13.31	GRAMD1C	rs73230239-?		3E-6				Illumina [4322238] (imputed)	N
1451	chr3	113625932	113625933	rs61077924	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.31	GRAMD1C	rs61077924-G	0.324	3E-148	(GRAM domain-containing protein 1C, GRAMD1C.8842.16.3)	0.62	[0.58-0.66] unit increase	Affymetrix [10572788] (imputed)	N
1451	chr3	113625932	113625933	rs61077924	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.31	GRAMD1C	rs61077924-G	0.324	2E-47	(GRAM domain-containing protein 1C, GRAMD1C.8336.267.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
1451	chr3	113625958	113625959	rs61634901	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,366 Icelandic ancestry individuals	NA	3q13.31		rs61634901-A	0.3364	1E-262		0.638975	[0.6-0.68] unit increase	Illumina [7506463] (imputed)	N
1451	chr3	113625958	113625959	rs61634901	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,360 Icelandic ancestry individuals	NA	3q13.31		rs61634901-A	0.3364	5E-13		0.0223556	[0.016-0.028] unit increase	Illumina [7506463] (imputed)	N
1451	chr3	113629967	113629968	rs55844438	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.31	NR	rs55844438-A	0.621	1E-112	(GRAM domain-containing protein 1C, GRAMD1C.8842.16.3)	0.55	[0.51-0.59] unit increase	Affymetrix [10572788] (imputed)	N
1451	chr3	113630809	113630810	rs9843141	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GRAMD1C	5,366 Icelandic ancestry individuals	NA	3q13.31		rs9843141-A	0.2481	8E-136		0.519582	[0.48-0.56] unit decrease	Illumina [7506463] (imputed)	N
1451	chr3	113631883	113631884	rs2712341	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.31	NR	rs2712341-C	0.372	3E-42	(GRAM domain-containing protein 1C, GRAMD1C.8336.267.3)	0.35	[0.29-0.41] unit decrease	Affymetrix [10572788] (imputed)	N
1452	chr3	113646656	113646657	rs4422272	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.31	GRAMD1C	rs4422272-C	0.65921875	4E-133	(GRAMD1C, 8842_16_3)	0.6167416	[0.57-0.66] unit decrease	Illumina [> 1000000] (imputed)	N
1452	chr3	113650445	113650446	rs114780919	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q13.31	NR	rs114780919-?	NR	8E-8	(Latino)	1.7019	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1452	chr3	113680950	113680951	rs1386478	22482804	Ellinghaus D	2012-04-06	Am J Hum Genet	Combined analysis of genome-wide association studies for Crohn disease and psoriasis identifies seven shared susceptibility loci.	Crohn's disease and psoriasis	2,529 European ancestry psoriasis cases, 2,142 European ancestry Crohn's disease cases, 10,460 European ancestry controls	Up to 3,187 European ancestry psoriasis cases, 4,073 European ancestry Crohn's disease cases, 10,100 European ancestry controls	3q13.31	ZDHHC23	rs1386478-A	NR	7E-6	(opposite-effect analysis)	1.12	[NR]	Affymetrix, Illumina, Perlegen [1116213] (imputed)	N
1453	chr3	113842012	113842013	rs2087017	23903073	Kim HN	2013-08-01	J Hum Genet	Genome-wide association study of the five-factor model of personality in young Korean women.	Personality dimensions	1,089 Korean ancestry females	2,090 Korean ancestry individuals	3q13.31	DRD3	rs2087017-A		6E-6	(Agreeableness)	0.05	[-0.0088-0.1088] unit increase	Illumina [2053685] (imputed)	N
1453	chr3	113890788	113890789	rs3732783	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	3q13.31	DRD3	rs3732783-T	0.0582	9E-6		1.8772	[NR] unit decrease	Illumina [1216189] (imputed)	N
1453	chr3	113891548	113891549	rs1800828	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q13.31		rs1800828-C	0.7473	5E-9		0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1453	chr3	113891548	113891549	rs1800828	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q13.31	DRD3	rs1800828-C	0.7508	2E-8		1.026033		Affymetrix [11880941] (imputed)	N
1454	chr3	113917371	113917372	rs62268962	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling hurt	372,047 European ancestry individuals	NA	3q13.31	DRD3	rs62268962-A	0.219591	3E-8		5.52	z score increase	NR [10847151] (imputed)	N
1454	chr3	113937334	113937335	rs9846423	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	3q13.31	ZNF80	rs9846423-?	NR	8E-8		0.309	[0.2-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1454	chr3	113937334	113937335	rs9846423	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma (childhood onset)	1,181 African American allergic asthma child cases, 498 African American non-allergic asthma child cases, 2,993 African American child controls, 998 European American allergic asthma child cases, 182 European American non-allergic asthma child cases, 4,097 European American child controls.	NA	3q13.31	ZNF80	rs9846423-?	NR	7E-7	(AA)			Affymetrix, Illumina [NR] (imputed)	N
1454	chr3	113946258	113946259	rs66678247	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (inherited effect)	1,119 European ancestry trios, 406 European ancestry cases, 2,976 European ancestry controls, 415 non-European ancestry trios	NA	3q13.31	AX747798	rs66678247-?	NR	1E-6		1.695341	[1.368477-2.100277]	Illumina [at least 4756772] (imputed)	N
1454	chr3	113984438	113984439	rs143445914	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder	29,475 European ancestry cases, 63,482 European ancestry controls	NA	3q13.31	NR	rs143445914-C	0.9717484	8E-6		1.0706638	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1454	chr3	114016232	114016233	rs72948659	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	3q13.31		rs72948659-C	0.89143	3E-6		0.0143869	[0.0083-0.0204] unit increase	Illumina [13900000] (imputed)	N
1454	chr3	114026672	114026673	rs11714612	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q13.31	NR	rs11714612-?	NR	4E-6		4.63	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1455	chr3	114052620	114052621	rs150338507	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.31	NR	rs150338507-G	0.0253387	1E-11		0.0674313	[0.048-0.087] unit decrease	NR [19129689] (imputed)	N
1455	chr3	114055987	114055988	rs115155878	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative atrial fibrillation after cardiac surgery	242 cases, 640 controls	NA	3q13.31	ZBTB20	rs115155878-?	NR	8E-7	(adjusted for delirium, myocardial infarction, renal failure and stroke)	4.7619047	[2.56-9.09]	Illumina [9007469] (imputed)	N
1455	chr3	114069606	114069607	rs138924453	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	3q13.31		rs138924453-?	NR	2E-9		0.0749929	[0.048-0.102] unit increase	NR [9800000] (imputed)	N
1455	chr3	114103746	114103747	rs10934270	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3q13.31	ZBTB20-AS1	rs10934270-C	0.596088	5E-11		1.0295038	NR	Affymetrix [~ 9600000] (imputed)	N
1455	chr3	114103746	114103747	rs10934270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q13.31		rs10934270-?	NR	6E-31				NR [~ 8900000] (imputed)	N
1455	chr3	114103746	114103747	rs10934270	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.31	NR	rs10934270-T	0.402998	1E-16		0.026283	[0.02-0.032] unit increase	NR [19129689] (imputed)	N
1455	chr3	114117326	114117327	rs16822593	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	3q13.31	ZBTB20	rs16822593-A		2E-6	(multivariable, dominant)	4.83	[2.53-9.20]	Illumina [729373]	N
1455	chr3	114121018	114121019	rs10511330	29942513	Penney ME	2018-06-13	Biomark Res	Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses.	Mucinous adenocarcinoma in colorectal cancer	57 European ancestry cases, 448 European ancestry controls	NA	3q13.31	ZBTB20	rs10511330-C		1E-6	(multivariable, dominant)	4.85	[2.54-9.23]	Illumina [729373]	N
1455	chr3	114134267	114134268	rs2722012	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3q13.31	ZBTB20	rs2722012-A	0.1874	1E-8		0.014088698	[0.0092-0.019] unit increase	Illumina [9339358] (imputed)	N
1455	chr3	114134566	114134567	rs73241528	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs73241528-A	0.04355	1E-8	(HSPB1)	0.2096	NR unit increase	Illumina [1671387] (imputed)	N
1455	chr3	114147431	114147432	rs4580516	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q13.31	NR	rs4580516-A	0.732	5E-8		0.00901082	[0.0058-0.0123] unit decrease	NR [9732723] (imputed)	N
1455	chr3	114147926	114147927	rs9288999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.31	NR	rs9288999-A	0.735	2E-14		0.00940292	[0.007-0.0118] unit increase	NR [9732723] (imputed)	N
1455	chr3	114147926	114147927	rs9288999	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q13.31	NR	rs9288999-A	0.735	2E-9		0.017441083	[0.012-0.023] unit increase	NR [~ 10000000] (imputed)	N
1455	chr3	114150333	114150334	rs2722033	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.31		rs2722033-C	0.063	1E-8		0.013	[0.0091-0.0169] unit decrease	NR [NR] (imputed)	N
1456	chr3	114164155	114164156	rs13067741	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.31		rs13067741-C	0.25	8E-11		6.49	z score increase	Affymetrix [9061022] (imputed)	N
1456	chr3	114170271	114170272	rs6438208	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3q13.31	ZBTB20	rs6438208-A		3E-10		0.975	[NR]	Affymetrix [up to 79000000] (imputed)	N
1456	chr3	114170271	114170272	rs6438208	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q13.31	ZBTB20	rs6438208-A	0.2538	4E-8		0.012643845	[0.0081-0.0172] unit decrease	Affymetrix [11514654] (imputed)	N
1456	chr3	114171389	114171390	rs9883949	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q13.31	NR	rs9883949-C	NR	9E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1456	chr3	114203968	114203969	rs2055981	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.31	LOC101929754	rs2055981-?	NR	4E-13		0.020653272	[0.015-0.026] unit increase	Illumina [27896057] (imputed)	N
1456	chr3	114214610	114214611	rs1533269	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.31		rs1533269-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1456	chr3	114231006	114231006	rs11268842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q13.31		rs11268842-ATATGCTTACCTATGGGTG	NR	2E-25		0.0143	[0.012-0.017] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1456	chr3	114231006	114231006	rs11268842	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q13.31		rs11268842-ATATGCTTACCTATGGGTG	0.468787	2E-12		0.0142576	[0.01-0.018] unit decrease	Illumina [13479295] (imputed)	N
1456	chr3	114260447	114260448	rs2669902	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.31	NR	rs2669902-G	0.22122	2E-9		0.0226529	[0.015-0.03] unit decrease	NR [19129689] (imputed)	N
1456	chr3	114261343	114261344	rs575179777	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	3q13.31		rs575179777-A	0.06767	5E-7		5.995		Illumina [7608150]	N
1457	chr3	114314058	114314059	rs1606492	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3q13.31	ZBTB20	rs1606492-C	0.6101	2E-9		0.0120144915	[0.0081-0.0159] unit decrease	Illumina [9339358] (imputed)	N
1457	chr3	114330090	114330091	rs6438214	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q13.31	ZBTB20	rs6438214-A	0.234	2E-8		0.0078	[0.0051-0.0105] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1457	chr3	114362763	114362764	rs9841504	31383772	Yan C	2019-08-05	Gut	Meta-analysis of genome-wide association studies and functional assays decipher susceptibility genes for gastric cancer in Chinese populations.	Gastric cancer	3,771 Chinese ancestry cases, 5,426 Chinese ancestry controls	7,035 Chinese ancestry cases, 8,323 Chinese ancestry controls	3q13.31	ZBTB20	rs9841504-C	0.84	4E-6		1.2345679	[1.12-1.35]	Affymetrix, Illumina [6192596] (imputed)	N
1457	chr3	114362763	114362764	rs9841504	22037551	Shi Y	2011-10-30	Nat Genet	A genome-wide association study identifies new susceptibility loci for non-cardia gastric cancer at 3q13.31 and 5p13.1.	Gastric cancer	1,006 Han Chinese ancestry cases, 2,273 Han Chinese ancestry controls	3,288 Han Chinese ancestry cases, 3,609 Han Chinese ancestry controls	3q13.31	ZBTB20	rs9841504-?	NR	2E-9		1.32	[1.20-1.45]	Affymetrix [555896]	N
1457	chr3	114399295	114399296	rs17681451	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.31	NA	rs17681451-A	0.0762	7E-13		0.0225	[0.016-0.029] unit decrease	NR [~ 27400000] (imputed)	N
1457	chr3	114415925	114415926	rs80082351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q13.31		rs80082351-G	NR	1E-9		0.0295	[0.02-0.039] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1457	chr3	114415925	114415926	rs80082351	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q13.31	ZBTB20	rs80082351-A	0.938199	8E-11		0.018501	[0.013-0.024] unit increase	Affymetrix [12370749]	N
1457	chr3	114417674	114417675	rs17619973	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.31	NR	rs17619973-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1457	chr3	114417674	114417675	rs17619973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.31		rs17619973-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1458	chr3	114444571	114444572	rs11711620	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q13.31	NR	rs11711620-A	0.83	9E-9		0.0141	[0.0092-0.019] unit increase	NR [NR]	N
1458	chr3	114461207	114461208	rs1882289	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q13.31	ZBTB20	rs1882289-A	0.8841	1E-8		0.2159	[0.14-0.29] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1458	chr3	114464857	114464858	rs9826148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q13.31		rs9826148-T	NR	6E-14		0.0202	[0.015-0.025] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1458	chr3	114464857	114464858	rs9826148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q13.31		rs9826148-T	NR	3E-16		0.0224	[0.017-0.028] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1458	chr3	114464857	114464858	rs9826148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	118,886 East Asian ancestry individuals	NA	3q13.31		rs9826148-T	0.377212	2E-8		0.0222496	[0.014-0.03] unit decrease	Illumina [13474352] (imputed)	N
1458	chr3	114464857	114464858	rs9826148	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q13.31	MIR4796	rs9826148-C	0.89056	5E-13		0.00269065	[0.002-0.0034] unit increase	Affymetrix [13995440] (imputed)	N
1458	chr3	114464857	114464858	rs9826148	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q13.31	ZBTB20	rs9826148-C	0.89	3E-14		7.58	z-score increase	Affymetrix [4311822] (imputed)	N
1458	chr3	114483412	114483413	rs3732481	25240745	Lopez S	2014-09-18	Mitochondrion	A genome-wide association study in the genetic analysis of idiopathic thrombophilia project suggests sex-specific regulation of mitochondrial DNA levels.	Mitochondrial DNA levels	173 European ancestry males and 213 European ancestry females from 21 families	NA	3q13.31	ZBTB20	rs3732481-?	NR	3E-6			[NR]	Illumina [283437]	N
1458	chr3	114484371	114484372	rs7650845	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q13.31	ZBTB20	rs7650845-C	0.185559	1E-8		0.0141034	[0.0093-0.0189] unit increase	Affymetrix [NR] (imputed)	N
1458	chr3	114500254	114500255	rs9853475	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3q13.31	ZBTB20	rs9853475-?	0.28259999999999996	2E-9		0.97	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1458	chr3	114520037	114520038	rs12695307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.31	NR	rs12695307-A	0.662689	9E-11				Affymetrix, Illumina [24558453] (imputed)	N
1458	chr3	114520037	114520038	rs12695307	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q13.31	NR	rs12695307-A	0.741249	2E-11		0.014254	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1458	chr3	114553233	114553234	rs2399510	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.31		rs2399510-?	NR	4E-24				NR [~ 8900000] (imputed)	N
1459	chr3	114570326	114570327	rs78705757	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q13.31	NR	rs78705757-C	0.0216089	4E-10		0.0662032	[0.046-0.087] unit decrease	NR [19129689] (imputed)	N
1459	chr3	114599988	114599989	rs116366156	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q13.31		rs116366156-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1459	chr3	114602339	114602340	rs7646282	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	3q13.31	ZBTB20	rs7646282-T		4E-6		0.448	[0.26-0.64] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1459	chr3	114612818	114612819	rs9842735	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q13.31	ZBTB20	rs9842735-G	0.542041	3E-10		0.014184436	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chr3	114612818	114612819	rs9842735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.31	NR	rs9842735-G	0.449291	2E-13				Affymetrix, Illumina [24588908] (imputed)	N
1459	chr3	114612818	114612819	rs9842735	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q13.31	NR	rs9842735-G	0.537316	3E-15		0.014422	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1459	chr3	114628646	114628647	rs9871203	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q13.31	ZBTB20	rs9871203-C	0.53661	1E-12		0.015972685	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1459	chr3	114631547	114631548	rs9867121	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3q13.31	NR	rs9867121-?		4E-12		0.0194994	[0.014-0.025] unit increase	Affymetrix [19400418] (imputed)	N
1460	chr3	114715864	114715865	rs139459337	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	3q13.31	ZBTB20	rs139459337-T		8E-7		0.49	[0.29-0.69] unit increase	Affymetrix, Illumina [8153767] (imputed)	N
1460	chr3	114726683	114726684	rs77244071	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-465 sp000433135 abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.31		rs77244071-A	0.036272	1E-8		0.152552	[0.1-0.2] unit increase	Illumina [7980478] (imputed)	N
1460	chr3	114733555	114733556	rs116493405	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q13.31	ZBTB20	rs116493405-A	0.058	1E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1460	chr3	114753077	114753078	rs7643617	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q13.31		rs7643617-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1460	chr3	114815658	114815659	rs80264330	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3q13.31	ZBTB20	rs80264330-?	NR	9E-9		0.0302655	[0.02-0.041] unit decrease	Affymetrix [25921788] (imputed)	N
1461	chr3	114850835	114850836	rs73230612	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3q13.31	ZBTB20	rs73230612-T	0.634	3E-6	(Japanese)	1.07	[1.04-1.09]	Illumina [7521072] (imputed)	N
1461	chr3	114875297	114875298	rs115950244	33692100	Simcoe M	2021-03-10	Sci Adv	Genome-wide association study in almost 195,000 individuals identifies 50 previously unidentified genetic loci for eye color.	Eye color	157,485 European ancestry individuals	35,501 European ancestry individuals, 959 Han Chinese ancestry individuals, 677 Indian ancestry individuals	3q13.31		rs115950244-T	0.016	4E-8	(EA)	5.496	NR z score decrease	Illumina [11532091] (imputed)	N
1461	chr3	114894095	114894096	rs9840892	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q13.31	intergenic	rs9840892-A	0.9814	2E-6		0.1086	[0.064-0.154] unit decrease	NR [8041861] (imputed)	N
1461	chr3	114913507	114913508	rs6438234	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	3q13.31	NR	rs6438234-G	0.237	3E-6		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1461	chr3	114932224	114932225	rs7653569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q13.31		rs7653569-G	NR	8E-9		0.0441	[0.029-0.059] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1461	chr3	114940209	114940210	rs17755786	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3q13.31	ZBTB20	rs17755786-C	0.480209	5E-17		1.0370841	NR	Affymetrix [~ 9600000] (imputed)	N
1461	chr3	114940209	114940210	rs17755786	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.31	GAP43	rs17755786-?	NR	1E-6	(TAG 60:12)	0.16447882	[0.098-0.231] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1461	chr3	114949868	114949870	rs55817891	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q13.31	NR	rs55817891-G	0.156409	1E-9		0.020140795	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1462	chr3	114968017	114968018	rs6806156	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q13.31	ZBTB20	rs6806156-T	0.611	2E-11		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1462	chr3	114983655	114983656	rs75080020	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q13.31	NR	rs75080020-T	NR	6E-6		1.13	[NR]	Illumina [7158791] (imputed)	N
1462	chr3	114986431	114986432	rs13088508	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3q13.31	Intergenic	rs13088508-G	NR	7E-6		0.0143876	[0.0081-0.0207] unit increase	Illumina [13520550] (imputed)	N
1462	chr3	114989284	114989285	rs17756220	30217971	Ho KWD	2018-09-14	Transl Psychiatry	Genome-wide association study of seasonal affective disorder.	Seasonality and depression	1,380 European ancestry cases, 2,937 European ancestry controls	NA	3q13.31	ZBTB20, GAP43	rs17756220-A		2E-6		0.469	[0.27-0.66] unit decrease	Affymetrix, Illumina [8153767] (imputed)	N
1462	chr3	115020055	115020056	rs201874554	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q13.31	NR	rs201874554-A	0.942024	9E-9		0.0157959	[0.011-0.021] unit increase	Affymetrix [16585854] (imputed)	N
1462	chr3	115020055	115020056	rs201874554	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q13.31	NR	rs201874554-A	0.942024	7E-7		0.015352	[0.0093-0.0214] unit increase	Affymetrix [16585866] (imputed)	N
1462	chr3	115056224	115056225	rs34073213	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.31		rs34073213-T	0.45	8E-57		15.89	z score increase	Affymetrix [9061022] (imputed)	N
1462	chr3	115056224	115056225	rs34073213	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q13.31		rs34073213-T	0.45	2E-24		10.21	z score increase	Affymetrix [9061022] (imputed)	N
1462	chr3	115056224	115056225	rs34073213	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q13.31		rs34073213-T	0.45	5E-22		9.64	z score increase	Affymetrix [9061022] (imputed)	N
1462	chr3	115056224	115056225	rs34073213	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q13.31	NR	rs34073213-T	0.4873	1E-17				NR [9056863] (imputed)	N
1462	chr3	115056224	115056225	rs34073213	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q13.31	NR	rs34073213-T	0.4873	1E-17				NR [9056863] (imputed)	N
1462	chr3	115063671	115063672	rs7645613	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q13.31	NR	rs7645613-C	0.3572	2E-12		0.034	[0.025-0.043] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1462	chr3	115069148	115069149	rs10514758	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	3q13.31	ZBTB20, GAP43	rs10514758-G	0.02	5E-6	(women)	0.321	[0.18-0.46] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
1462	chr3	115077350	115077351	rs1599116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q13.31		rs1599116-T	NR	5E-13		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1463	chr3	115084079	115084080	rs6438247	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q13.31	NR	rs6438247-C	0.1546	4E-11		0.044	[0.031-0.057] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1463	chr3	115110803	115110804	rs4831174	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q13.31	intergenic	rs4831174-A	0.5201	2E-10		0.1228	[0.085-0.16] mmHg increase	Affymetrix [NR] (imputed)	N
1463	chr3	115115396	115115397	rs4831182	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q13.31	NR	rs4831182-?		2E-9				NR [7428630] (imputed)	N
1463	chr3	115115931	115115932	rs6438253	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q13.31	intergenic	rs6438253-A	0.529	8E-11		0.1737	[0.12-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1463	chr3	115138921	115138922	rs1392263	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q13.31		rs1392263-?	NR	1E-11				NR [9705931] (imputed)	N
1464	chr3	115214585	115214586	rs114497213	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	3q13.31	ZBTB20	rs114497213-?	NR	5E-8		0.00489156	[-0.00585-0.01563] unit increase	Affymetrix [25921788] (imputed)	N
1464	chr3	115214585	115214586	rs114497213	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	3q13.31	ZBTB20	rs114497213-?	NR	5E-8		0.0297566	[0.019-0.04] unit decrease	Affymetrix [25921788] (imputed)	N
1464	chr3	115222304	115222305	rs1553212	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.31	Intergenic	rs1553212-T	0.4751	1E-8	(MTAG)	0.0094	[0.0061-0.0127] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1464	chr3	115278681	115278682	rs16823858	26039976	Wei Z	2015-06-17	Sci Rep	Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.	HIV-1 viral setpoint	326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases	NA	3q13.31	ZBTB20	rs16823858-A	0.06667	8E-7	(Xin)	1.294	unit decrease	Illumina [up to 528294]	N
1464	chr3	115324351	115324352	rs1438356	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.31	NR	rs1438356-A	0.287	3E-9		0.00710991	[0.0048-0.0095] unit decrease	NR [9732723] (imputed)	N
1464	chr3	115324351	115324352	rs1438356	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.31	Intergenic	rs1438356-A	0.2837	7E-9	(MTAG)	0.0106	[0.0071-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1464	chr3	115333963	115333964	rs115371810	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q13.31	Intergenic	rs115371810-G	1.0	3E-6	(AA)	0.484	unit increase	Illumina [NR] (imputed)	N
1464	chr3	115334994	115334995	rs11717844	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q13.31	NR	rs11717844-?	NR	8E-9				Illumina [7760689] (imputed)	N
1464	chr3	115335518	115335519	rs78274021	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q13.31	Intergenic	rs78274021-T	0.998	2E-6	(AA)	0.27	unit increase	Illumina [NR] (imputed)	N
1464	chr3	115335683	115335684	rs16823934	26989097	Coleman JR	2016-03-17	Br J Psychiatry	Genome-wide association study of response to cognitive-behavioural therapy in children with anxiety disorders.	Response to cognitive-behavioural therapy in anxiety disorder	Up to 902 European ancestry cases, up to 78 cases	NA	3q13.31	GAP43	rs16823934-?	0.238	6E-6	(post-treatment)			Illumina [3017604] (imputed)	N
1465	chr3	115378465	115378469	rs10560003	31482010	Liu C	2019-08-29	NPJ Genom Med	Genome-wide association study for proliferative diabetic retinopathy in Africans.	Proliferative diabetic retinopathy	64 African ancestry cases, 227 African ancestry controls	19 African American cases, 50 African American controls	3q13.31	GAP43, RP11-326J18.1	rs10560003-T	0.02	3E-6		1.52	[1.28-1.81]	Affymetrix, Illumina [18433741] (imputed)	N
1465	chr3	115415833	115415834	rs283386	28632202	Witt SH	2017-06-20	Transl Psychiatry	Genome-wide association study of borderline personality disorder reveals genetic overlap with bipolar disorder, major depression and schizophrenia.	Borderline personality disorder	998 European ancestry cases, 1,545 European ancestry controls	NA	3q13.31	GAP43	rs283386-G	0.1042	7E-6		1.6398821	[1.42-1.86]	Illumina [10736316] (imputed)	N
1466	chr3	115552169	115552170	rs2944404	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		LSAMP	rs2944404-?	NR	9E-7	(male)	0.785392	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1467	chr3	115650447	115650448	rs4378954	26621817	Cheng TH	2015-12-01	Sci Rep	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.	Colorectal or endometrial cancer	5,725 European ancestry colorectal carcinoma cases, 2,212 European ancestry endometrial carcinoma cases, 13,396 European ancestry controls	4,330 European ancestry endometrial carcinoma cases, 26,849 European ancestry controls	3q13.31	LSAMP	rs4378954-C	0.898	4E-7	(same direction)	1.15	[1.09-1.21]	Illumina [up to 6000000] (imputed)	N
1467	chr3	115731736	115731737	rs114457950	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3q13.31	LSAMP	rs114457950-T	0.9773	6E-6		0.1585	[0.09-0.227] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1468	chr3	115740718	115740719	rs16824395	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	3q13.31	NR	rs16824395-A	0.94	6E-6		1.92	[1.63-2.21]	Illumina [4058415] (imputed)	N
1468	chr3	115748267	115748268	rs57682148	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q13.31	NR	rs57682148-A	0.9983	3E-6		0.25270873	[0.15-0.36] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1468	chr3	115828953	115828954	rs35225274	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3q13.31	LSAMP	rs35225274-G	NR	9E-7		0.0773196	[0.046-0.108] unit increase	Illumina [13519193] (imputed)	N
1469	chr3	115883475	115883475	rs369789482	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q13.31	LSAMP	rs369789482-AAT	0.758154	5E-8		0.0130637	[0.0082-0.0179] unit increase	NR [16516521] (imputed)	N
1469	chr3	115928170	115928171	rs111646341	26030696	Cho MH	2015-06-01	Am J Respir Crit Care Med	A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.	Emphysema imaging phenotypes	5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls	NA	3q13.31	LSAMP	rs111646341-A	NR	9E-7	(Perc15, All)	5.8	[2.27-9.33] unit increase	Illumina [7600000] (imputed)	N
1469	chr3	115933588	115933589	rs149183310	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	3q13.31	Mir_340, LSAMP	rs149183310-T	0.044	2E-6		1.52	[NR]	Illumina [7659573] (imputed)	N
1470	chr3	116038248	116038249	rs17646258	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LSAMP	5,364 Icelandic ancestry individuals	NA	3q13.31		rs17646258-T	0.1807	6E-20		0.217385	[0.17-0.26] unit decrease	Illumina [7506463] (imputed)	N
1470	chr3	116038248	116038249	rs17646258	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.31	LSAMP	rs17646258-C	0.82875	1E-12	(LSAMP, 2999_6_2)	0.22204888	[0.16-0.28] unit increase	Illumina [> 1000000] (imputed)	N
1470	chr3	116041367	116041368	rs79402305	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q13.31	LSAMP	rs79402305-A	0.9232	2E-10		0.0203097	[0.014-0.027] unit increase	Affymetrix [11880941] (imputed)	N
1470	chr3	116054716	116054717	rs143178528	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q13.31	LSAMP	rs143178528-T	0.0137212312439246	3E-8	(G_unclassified_P_Firmicutes_HB)	1.49449	[0.96-2.02] unit decrease	Illumina [7711310] (imputed)	N
1470	chr3	116092920	116092921	rs74755422	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q13.31		rs74755422-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1470	chr3	116096880	116096881	rs72950184	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q13.31	LSAMP	rs72950184-C	0.01	1E-6	(African American)	1.15	[0.68-1.62] unit increase	Illumina [up to 13042663] (imputed)	N
1470	chr3	116103274	116103275	rs72950188	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q13.31	LSAMP	rs72950188-T	0.9238	2E-10		1.0457141		Affymetrix [11880941] (imputed)	N
1470	chr3	116106412	116106413	rs77488831	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus infection after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	3q13.31		rs77488831-?	NR	8E-7		0.14	[0.04-0.43]	Affymetrix, Illumina [29826485] (imputed)	N
1470	chr3	116106822	116106823	rs2116308	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.31	LSAMP	rs2116308-C	0.867	8E-12	(Limbic system-associated membrane protein, LSAMP.2999.6.2)	0.26	[0.18-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1471	chr3	116178667	116178668	rs77122835	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3q13.31		rs77122835-?	NR	9E-6	(overall)	1.29		Illumina [11595112] (imputed)	N
1471	chr3	116181024	116181025	rs16824957	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	3q13.31	NR	rs16824957-?		7E-6		0.157	[0.089-0.225] unit decrease	Illumina [> 269840] (imputed)	N
1472	chr3	116279887	116279888	rs1401069	31904872	Chou WC	2020-01-06	Int J Cancer	A Functional Variant Near XCL1 Gene Improves Breast Cancer Survival via Promoting Cancer Immunity.	Survival in breast cancer (estrogen-receptor positive)	953 Taiwanese individuals	NA	3q13.31	intergenic	rs1401069-?		5E-7				Affymetrix [632566] (imputed)	N
1472	chr3	116295003	116295004	rs2102847	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3q13.31	NA	rs2102847-G		9E-9		0.0105414	[0.0069-0.0141] unit increase	Illumina [13288253] (imputed)	N
1472	chr3	116318188	116318189	rs13086352	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	3q13.31	TUSC7	rs13086352-G	0.767	7E-6		0.021	[0.011-0.031] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1472	chr3	116356009	116356010	rs9847048	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	3q13.31	NR	rs9847048-?	NR	5E-7	(family_Carnobacteriaceae)	0.9902027	[0.63-1.35] unit increase	Affymetrix [210924]	N
1473	chr3	116411272	116411273	rs1518336	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in light drinkers	1,379 Korean ancestry cases, 13,132 Korean ancestry controls	NA	3q13.31		rs1518336-?	NR	7E-6		0.8277	[0.7623-0.8988]	Affymetrix [7975321] (imputed)	N
1473	chr3	116416717	116416718	rs2139045	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3q13.31		rs2139045-C	NR	2E-6		4.753234	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1473	chr3	116416717	116416718	rs2139045	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3q13.31		rs2139045-C	NR	6E-6		4.5180893	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1473	chr3	116425934	116425935	rs9845387	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. usually)	129,270 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3q13.31	BZW1L1/LOC285194	rs9845387-C	0.959308	5E-9		1.08	[1.05-1.11]	Affymetrix [14661600] (imputed)	N
1473	chr3	116425934	116425935	rs9845387	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3q13.31	BZW1L1/LOC285194	rs9845387-C	0.959308	5E-7		1.08	[1.05-1.11]	Affymetrix [14661600] (imputed)	N
1473	chr3	116445081	116445082	rs1347055	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q13.31	GAP43	rs1347055-?	NR	2E-7	(alpha glycerophosphocholine)	0.2133689	[0.13-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
1473	chr3	116445323	116445324	rs1432364	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	3q13.31	intergenic	rs1432364-T	0.422	4E-6				Affymetrix [316934]	N
1473	chr3	116502394	116502395	rs185283278	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTAG1A	5,365 Icelandic ancestry individuals	NA	3q13.31		rs185283278-A	0.01123	5E-12		0.609753	[0.44-0.78] unit decrease	Illumina [7506463] (imputed)	N
1473	chr3	116510191	116510192	rs1368141	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3q13.31	Intergenic	rs1368141-?	NR	2E-6		1.867	[NR]	Affymetrix [492217] (imputed)	N
1474	chr3	116530833	116530834	rs143525717	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs143525717-T	0.01394	1E-11	(TGM2)	2.051	NR unit increase	Illumina [1671387] (imputed)	N
1474	chr3	116539467	116539468	rs62266031	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	3q13.31		rs62266031-G	0.366	3E-6		0.6		Illumina [5411567] (imputed)	N
1474	chr3	116577312	116577313	rs6789699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q13.31		rs6789699-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1474	chr3	116582185	116582186	rs7430651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.31		rs7430651-T	0.2863	9E-13		0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1474	chr3	116582185	116582186	rs7430651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.31	Intergenic	rs7430651-T	0.2863	2E-12	(MTAG)	0.0102	[0.0075-0.0129] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1474	chr3	116582907	116582908	rs34031601	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.31		rs34031601-T	0.2814	8E-13	(conditional-joint)	0.0112	[0.0081-0.0143] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1475	chr3	116686381	116686382	rs590225	32180562	Kulyte A	2020-01-25	Mol Metab	Genome-wide association study of adipocyte lipolysis in the GENetics of adipocyte lipolysis (GENiAL) cohort.	Stimulated adipocyte lipolysis	874 European ancestry individuals	NA	3q13.31	NR	rs590225-C	0.82	8E-6		0.078	[0.045-0.111] unit decrease	NR [9260588] (imputed)	N
1475	chr3	116761659	116761660	rs1521418	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	3q13.31	intergenic	rs1521418-C	0.111	8E-6	(Stroop)	0.2105	[0.12-0.30] unit decrease	Affymetrix [> 371951] (imputed)	N
1475	chr3	116764009	116764010	rs12497655	26305897	Iyengar SK	2015-08-25	PLoS Genet	Genome-Wide Association and Trans-ethnic Meta-Analysis for Advanced Diabetic Kidney Disease: Family Investigation of Nephropathy and Diabetes (FIND).	Diabetic kidney disease	1,564 African American cases, 369  African American diabetic controls, 1,288 African American non-diabetic controls, 538 American Indian ancestry cases, 319 American Indian ancestry diabetic controls, 342 European ancestry cases, 404 European ancestry diabetic controls, 779 Mexican ancestry cases, 594 Mexican ancestry diabetic controls	950 African American cases, 50 African American diabetic controls, 1,887 African American non-diabetic controls, 471 American Indian ancestry cases, 340 American Indian ancestry diabetic controls, 486 American Indian ancestry non-diabetic controls, 582 European ancestry ancestry cases, 205 European ancestry diabetic controls, 2,568 European ancestry non-diabetic controls	3q13.31	NR	rs12497655-?	0.73	3E-6	(American Indian, additive )	1.4285715		Affymetrix [NR]	N
1476	chr3	116882731	116882732	rs9844985	29071344	Zhou H	2017-10-25	JAMA Psychiatry	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Major depression and alcohol dependence	3,041 African American individuals, 1,618 European ancestry individuals	1,612 African American individuals, 1,551 European ancestry individuals	3q13.31	intergenic	rs9844985-C	0.552	2E-6		0.364	[0.22-0.51] unit increase	Illumina [at least 5086170] (imputed)	N
1476	chr3	116898326	116898327	rs4855928	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.31	Intergenic	rs4855928-T	0.5181	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1476	chr3	116912188	116912189	rs11916118	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	3q13.31	NR	rs11916118-G		5E-6		0.0889	[0.051-0.127] SD units decrease	NR [10700000] (imputed)	N
1477	chr3	116935322	116935323	rs2868975	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q13.31	NR	rs2868975-G	NR	7E-6		0.016	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1477	chr3	116935322	116935323	rs2868975	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3q13.31	LINC00901, IGSF11	rs2868975-G	0.19	3E-9	(Male)	0.026	[0.018-0.034] unit decrease	Illumina [6108953] (imputed)	N
1477	chr3	116937545	116937546	rs6804181	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.31	NA	rs6804181-A	0.8215	6E-10		0.0141	[0.0096-0.0186] unit increase	NR [~ 27400000] (imputed)	N
1477	chr3	116942253	116942254	rs10934396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.31	Intergenic	rs10934396-T	0.3541	3E-11	(MTAG)	0.0114	[0.0081-0.0147] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1477	chr3	116949805	116949806	rs9865584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q13.31		rs9865584-A	NR	1E-10		0.0119	[0.0084-0.0154] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1477	chr3	116949805	116949806	rs9865584	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q13.31		rs9865584-A	NR	8E-9		0.0122	[0.0081-0.0163] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1477	chr3	116959273	116959274	rs59382200	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q13.31	NR	rs59382200-A	NR	1E-8		5.68	z score increase	Affymetrix [10847151] (imputed)	N
1477	chr3	116959273	116959274	rs59382200	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q13.31	NR	rs59382200-G	NR	2E-11		0.01581	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1477	chr3	116960437	116960438	rs6798167	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3q13.31	LSAMP	rs6798167-A	NR	3E-8		0.0096646	[0.0063-0.0131] unit decrease	Affymetrix [18485882] (imputed)	N
1477	chr3	116964047	116964048	rs11712223	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Experiencing mood swings	373,733 European ancestry individuals	NA	3q13.31	LSAMP	rs11712223-T	0.390924	2E-8		5.6	z score decrease	NR [10847151] (imputed)	N
1477	chr3	116969736	116969737	rs1551840	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q13.31	NR	rs1551840-A	0.386522140680065	2E-8		0.0052890014	[0.0034-0.0071] unit decrease	NR [NR]	N
1477	chr3	116970252	116970253	rs3900989	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q13.31	NR	rs3900989-C	0.388553403080325	3E-8		0.008561548	[0.0055-0.0116] unit decrease	NR [NR]	N
1477	chr3	116970252	116970253	rs3900989	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3q13.31	NR	rs3900989-C	0.388553403080325	4E-8		0.0053923894	[0.0035-0.0073] unit decrease	NR [NR]	N
1477	chr3	116979075	116979076	rs13101183	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q13.31	NR	rs13101183-T	NR	6E-7	(GEE model)	0.99061	[0.6-1.38] unit decrease	NR [NR] (imputed)	N
1477	chr3	116981005	116981006	rs9874540	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q13.31		rs9874540-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1477	chr3	116990919	116990920	rs78268384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.31	Intergenic	rs78268384-A	0.2904	1E-8	(MTAG)	0.0113	[0.0074-0.0152] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1477	chr3	116990919	116990920	rs78268384	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q13.31	Intergenic	rs78268384-C	0.7093	2E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1477	chr3	116996902	116996903	rs67932684	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling miserable	376,097 European ancestry individuals	NA	3q13.31	LSAMP	rs67932684-A	0.390294	6E-9		5.81	z score increase	NR [10847151] (imputed)	N
1477	chr3	117027511	117027512	rs7632070	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q13.31	NR	rs7632070-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
1478	chr3	117156254	117156255	rs9870146	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.31	PTMAP8	rs9870146-G	0.497	9E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
1478	chr3	117158449	117158450	rs9881096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.31		rs9881096-T	0.5897	2E-8	(conditional-joint)	0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1478	chr3	117174567	117174568	rs11917701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.31		rs11917701-A	0.4041	9E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1478	chr3	117174567	117174568	rs11917701	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.31	Intergenic	rs11917701-A	0.4041	1E-9	(MTAG)	0.0081	[0.0056-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1479	chr3	117243795	117243796	rs72951640	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Asymmetrical dimethylarginine levels	5110 European ancestry individuals	NA	3q13.31	intergenic	rs72951640-T	0.014	5E-6		0.408	[0.23-0.58] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
1479	chr3	117307566	117307567	rs1875517	17903300	Fox CS	2007-09-19	BMC Med Genet	Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project.	Waist circumference	1,079 European ancestry individuals from 310 families	NA	3q13.31	intergenic	rs1875517-?	NR	2E-6				Affymetrix [70897]	N
1479	chr3	117308165	117308166	rs76102962	34269803	Casto A	2021-07-16	Blood	Genetic Variants Associated with Cytomegalovirus Infection after Allogeneic Hematopoietic Cell Transplantation.	Cytomegalovirus high-level reactivation after allogeneic hematopoietic cell transplantation (donors)	up to 1,301 European ancestry donors	up to 868 European ancestry donors	3q13.31		rs76102962-?	NR	2E-7		3.36	[2.28-4.95]	Affymetrix, Illumina [29826485] (imputed)	N
1480	chr3	117310068	117310069	rs2088913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.31		rs2088913-A	0.5732	1E-8		0.0081	[0.0054-0.0108] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1480	chr3	117310068	117310069	rs2088913	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.31	Intergenic	rs2088913-A	0.5732	7E-9	(MTAG)	0.0077	[0.0052-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1480	chr3	117311057	117311058	rs56266787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs56266787-T	0.01742	4E-9	(HBD)	3.942	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr3	117311057	117311058	rs56266787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs56266787-T	0.01742	2E-9	(HBG1)	12.78	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr3	117311057	117311058	rs56266787	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.31	NR	rs56266787-T	0.01742	1E-8	(HNRNPH3)	0.06617	NR unit increase	Illumina [1671387] (imputed)	N
1480	chr3	117317202	117317203	rs13082002	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3q13.31	LSAMP	rs13082002-?	NR	7E-9		0.0141314	[0.0093-0.0189] unit decrease	Affymetrix [25921788] (imputed)	N
1480	chr3	117364459	117364460	rs6789437	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q13.32	IGSF11	rs6789437-A	0.1208	9E-9		0.022694703	[0.015-0.03] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1480	chr3	117374777	117374777	rs142479295	33430342	Younes N	2021-01-07	J Pers Med	A Whole-Genome Sequencing Association Study of Low Bone Mineral Density Identifies New Susceptibility Loci in the Phase I Qatar Biobank Cohort.	Total body bone mineral density	3,000 Qatari ancestry individuals	NA	3q13.32		rs142479295-?	NR	1E-7				Illumina [1084750]	N
1480	chr3	117401370	117401371	rs4303899	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3q13.32	lincRNA	rs4303899-G	0.12	2E-8	(CXCL12)	0.09	[0.051-0.129] unit decrease	Affymetrix [622716]	N
1480	chr3	117421409	117421410	rs55723389	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	3q13.32	NR	rs55723389-G	NR	9E-6		0.3438	[0.19-0.5] SD units decrease	NR [10700000] (imputed)	N
1481	chr3	117493599	117493600	rs4146336	31508503	Warrier V	2019-09-03	Commun Biol	Social and non-social autism symptoms and trait domains are genetically dissociable.	Systemising	51,564 European ancestry individuals	NA	3q13.32	LSAMP	rs4146336-C	NR	3E-8		0.728243	[0.47-0.98] unit decrease	NR [9955952] (imputed)	N
1481	chr3	117509983	117509984	rs6783233	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	3q13.32	NR	rs6783233-T	0.2833	1E-13		1.018	[1.013-1.023]	NR [8098588] (imputed)	N
1481	chr3	117510713	117510714	rs34981078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.32	Intergenic	rs34981078-T	0.6544	4E-10	(MTAG)	0.0108	[0.0075-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1481	chr3	117513203	117513204	rs13084363	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q13.32	Intergenic	rs13084363-T	0.7632	1E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1481	chr3	117515518	117515519	rs66511648	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	3q13.32		rs66511648-?	NR	1E-8		0.0189	unit decrease	NR [NR]	N
1481	chr3	117515518	117515519	rs66511648	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3q13.32	NR	rs66511648-T	0.716	5E-10		0.028520253	[0.02-0.038] unit decrease	NR [NR]	N
1481	chr3	117515518	117515519	rs66511648	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Help-seeking from a GP	113,262 British ancestry cases, 219,360 British ancestry controls	NA	3q13.32	NR	rs66511648-C	0.284	2E-8		1.033	[1.02-1.04]	NR [5276842] (imputed)	N
1481	chr3	117515518	117515519	rs66511648	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q13.32	NR	rs66511648-C	0.27377064575305	5E-9		0.0060275686	[0.004-0.008] unit increase	NR [NR]	N
1481	chr3	117515518	117515519	rs66511648	29662059	Howard DM	2018-04-16	Nat Commun	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.	Depression (broad)	113,769 British ancestry cases, 208,811 British ancestry controls	NA	3q13.32	NR	rs66511648-C	0.2855	1E-7		0.007	[0.0045-0.0095] unit increase	NR [7666894] (imputed)	N
1481	chr3	117522711	117522712	rs13065007	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q13.32	IGSF11	rs13065007-A	0.2649	1E-9		0.013855419	[0.0094-0.0183] unit increase	Affymetrix [11514654] (imputed)	N
1481	chr3	117532594	117532595	rs62264957	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q13.32	Intergenic	rs62264957-A	0.863	3E-10		0.0179	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1481	chr3	117552110	117552111	rs10934420	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset voice breaking)	8,245 European ancestry early onset individuals, 172,138 European ancestry average onset individuals	NA	3q13.32		rs10934420-C	NR	3E-6		0.003287	[0.0019-0.0046] years decrease	NR [7400000] (imputed)	N
1481	chr3	117552110	117552111	rs10934420	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	3q13.32		rs10934420-C	NR	3E-10		0.02043276	[0.014-0.027] years increase	NR [7400000] (imputed)	N
1481	chr3	117552110	117552111	rs10934420	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	3q13.32	NR	rs10934420-T	0.3657	7E-7	(Japanese)	0.045	[0.027-0.063] year decrease	Illumina [at least 532488] (imputed)	N
1481	chr3	117557934	117557935	rs35239854	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Flavobacteriales abundance in stool	5,959 Finnish ancestry individuals	NA	3q13.32		rs35239854-A	0.0346568	6E-9		0.0643043	[0.043-0.086] unit increase	Illumina [7980478] (imputed)	N
1481	chr3	117562435	117562436	rs11715566	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menarche (age at onset)	67,029 Japanese ancestry women	73,397 European ancestry women	3q13.32	NR	rs11715566-C	0.37	1E-6	(Japanese)	0.044	[0.026-0.062] year decrease	Illumina [at least 532488] (imputed)	N
1481	chr3	117562435	117562436	rs11715566	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q13.32	IGSF11	rs11715566-T	0.5	2E-27		0.05	[0.04-0.06] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1481	chr3	117571514	117571515	rs9876710	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	3q13.32	IGSF11, TUSC7	rs9876710-?	0.0	2E-10				Affymetrix [547296]	N
1482	chr3	117574366	117574367	rs13090448	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.32		rs13090448-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1482	chr3	117574821	117574822	rs6438424	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	3q13.32	intergenic	rs6438424-?	NR	4E-13		0.031	[0.023-0.040] unit increase	Illumina [12039492]	N
1482	chr3	117574821	117574822	rs6438424	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3q13.32	intergenic	rs6438424-A	0.50	1E-13		2.7	[1.92-3.48] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1482	chr3	117583646	117583647	rs9790189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q13.32		rs9790189-A	NR	5E-16		0.0105	[0.008-0.013] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1482	chr3	117593482	117593483	rs7433864	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q13.32		rs7433864-?	NR	7E-33				NR [~ 8900000] (imputed)	N
1482	chr3	117599115	117599116	rs9809760	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3q13.32	LINC00901	rs9809760-C	0.4536	8E-7		0.005	[0.003-0.007] unit increase	Affymetrix [~ 7740000] (imputed)	N
1482	chr3	117602143	117602144	rs73163783	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q13.32	NR	rs73163783-C	0.2768	1E-8		1.0384216	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1482	chr3	117605915	117605916	rs4277680	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q13.32		rs4277680-G	0.62164	4E-8		0.0113112	[0.0073-0.0154] unit increase	Illumina [13479295] (imputed)	N
1482	chr3	117605915	117605916	rs4277680	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q13.32	LINC00901, IGSF11	rs4277680-?	NR	4E-10		0.018253753	[0.013-0.024] unit increase	Illumina [27896057] (imputed)	N
1482	chr3	117611484	117611485	rs1993408	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q13.32	Intergenic	rs1993408-A	0.6138	2E-11	(MTAG)	0.0124	[0.0089-0.0159] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1482	chr3	117620922	117620923	rs1378833	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q13.32	NR	rs1378833-?	NR	5E-6		1372.7549	NR unit increase	Illumina [2379855]	N
1482	chr3	117635197	117635198	rs716936	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q13.32	IGSF11	rs716936-T	0.1865	8E-9		0.017544318	[0.012-0.023] unit decrease	Affymetrix [11515109] (imputed)	N
1482	chr3	117637294	117637295	rs9815484	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q13.32	NA	rs9815484-G	0.8203	3E-9	(Male)	1.0775862	[1.05-1.10]	Affymetrix, Illumina [NR] (imputed)	N
1482	chr3	117639574	117639575	rs62264764	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3q13.32	IGSF11	rs62264764-A	0.149	9E-10		0.0196	[0.013-0.026] unit decrease	Illumina [~ 250000] (imputed)	N
1482	chr3	117641723	117641724	rs57945129	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q13.32	intergenic	rs57945129-C	0.851143	6E-15		0.0228543	[0.017-0.029] unit decrease	NR [16516521] (imputed)	N
1482	chr3	117642004	117642005	rs62264767	32332799	Song W	2020-04-24	Sci Rep	Genome-wide association analysis of insomnia using data from Partners Biobank.	Insomnia	404,588 European ancestry individuals, 17,651 European, Hispanic and African ancestry individuals	NA	3q13.32	LSAMP:RP11-384F7.2	rs62264767-C	0.164	1E-8				Illumina [5508534] (imputed)	N
1482	chr3	117642004	117642005	rs62264767	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q13.32	NR	rs62264767-A	0.8531	2E-14		1.067	[1.05-1.08]	Affymetrix, Illumina [NR] (imputed)	N
1482	chr3	117653415	117653416	rs1378835	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q13.32	NR	rs1378835-G	0.546	2E-9		0.00795323	[0.0054-0.0105] unit increase	NR [~ 9732723] (imputed)	N
1482	chr3	117666389	117666390	rs1585082	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	3q13.32		rs1585082-G	NR	2E-6		0.3073	unit increase	Illumina [8524982] (imputed)	N
1482	chr3	117702269	117702270	rs705219	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q13.32		rs705219-?	NR	5E-14				NR [~ 8900000] (imputed)	N
1483	chr3	117709831	117709832	rs186389748	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q13.32	NR	rs186389748-C	0.0041	6E-7		0.16166474	[0.098-0.225] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1483	chr3	117719537	117719538	rs1499972	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q13.32	NR	rs1499972-C	NR	3E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1483	chr3	117776019	117776020	rs1995245	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Smoking status (ever vs never smokers)	336,066 British ancestry individuals	NA	3q13.32	NR	rs1995245-T	0.8503	2E-9		1.0427529	NR	NR [8968716] (imputed)	N
1483	chr3	117778175	117778176	rs1353910	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.32	NR	rs1353910-T	0.85	2E-17		0.0128625	[0.0099-0.0158] unit increase	NR [9732723] (imputed)	N
1483	chr3	117778175	117778176	rs1353910	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q13.32	NR	rs1353910-T	0.847	2E-9		0.0121597	[0.0082-0.0161] unit decrease	NR [9732723] (imputed)	N
1483	chr3	117781323	117781324	rs6438432	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q13.32	Intergenic	rs6438432-C	0.4395	1E-10		0.0127	[0.0088-0.0166] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1483	chr3	117784972	117784973	rs9815332	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q13.32	IGSF11	rs9815332-T	0.5605	2E-10		0.016487602	[0.011-0.022] unit increase	Affymetrix [~ 11515000] (imputed)	N
1483	chr3	117792985	117792986	rs2865303	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.32		rs2865303-G	0.15	2E-22		0.015	[0.011-0.019] unit decrease	NR [NR] (imputed)	N
1483	chr3	117792985	117792986	rs2865303	33082346	Xu K	2020-10-20	Nat Commun	Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals.	Smoking initiation	842,717 European ancestry individuals	NA	3q13.32	LINC00901, IGSF11	rs2865303-G		1E-9		0.971	[NR]	Affymetrix [up to 79000000] (imputed)	N
1483	chr3	117805616	117805617	rs768917	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.32	NR	rs768917-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1483	chr3	117805616	117805617	rs768917	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.32		rs768917-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1483	chr3	117815842	117815843	rs1909590	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q13.32	IGSF11	rs1909590-A	0.1481	4E-16		0.024852458	[0.019-0.031] unit decrease	Affymetrix [11514654] (imputed)	N
1483	chr3	117822148	117822149	rs6438436	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q13.32	NR	rs6438436-T	0.816	5E-14		0.024737045	[0.018-0.031] unit increase	NR [~ 10000000] (imputed)	N
1483	chr3	117828677	117828678	rs6780942	32534018	Liu X	2020-06-10	Brain Behav Immun	Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders - findings from a Danish population-based study.	Mental disorder (without autoimmune disease)	42,866 Danish ancestry cases, 19,790 Danish ancestry controls	NA	3q13.32	NR	rs6780942-?	NR	1E-6				NR [7721839] (imputed)	N
1484	chr3	117940843	117940844	rs9864951	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q13.32	IGSF11	rs9864951-A	0.6467	7E-10		0.013980875	[0.0095-0.0184] unit increase	Affymetrix [11514654] (imputed)	N
1484	chr3	117959501	117959502	rs9853921	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	3q13.32	LOC105374060	rs9853921-?	NR	8E-7		2.3	[1.32-3.28] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1485	chr3	118023514	118023515	rs779206	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q13.32	NA	rs779206-A	0.7218	3E-10		0.0122	[0.0085-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1485	chr3	118050717	118050718	rs9812918	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q13.32	NR	rs9812918-C	NR	7E-7	(GEE model)	0.49768	[0.3-0.69] unit decrease	NR [NR] (imputed)	N
1485	chr3	118071922	118071923	rs16828263	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	3q13.32	NR	rs16828263-C	5.6E-4	4E-9		1.118	[0.75-1.49] unit increase	Affymetrix [10972371] (imputed)	N
1486	chr3	118101725	118101726	rs10934447	25993607	de Moor MH	2015-05-20	JAMA Psychiatry	Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.	Neuroticism	Up to 627 Cilento (founder/genetic isolate) individuals, up to 2,296 Erasmus Rucphen (founder/genetic isolate) individuals, up to 1,650 Orcadian (founder/genetic isolate) individuals, up to 909 Vis (founder/genetic isolate) individuals, up to 58,179 European ancestry individuals	Up to 9,786 European ancestry individuals	3q13.32	NR	rs10934447-A	NR	4E-6		0.035	[0.021-0.049] unit increase	Affymetrix, Illumina, Perlegen [6949614] (imputed)	N
1486	chr3	118121334	118121335	rs488628	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	3q13.32	intergenic	rs488628-?	0.21	6E-7				Illumina [565404]	N
1486	chr3	118135649	118135650	rs114515669	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.32	NR	rs114515669-C	0.01045	2E-8	(SELENBP1)	2.236	NR unit increase	Illumina [1671387] (imputed)	N
1486	chr3	118151651	118151652	rs558882	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q13.32	NR	rs558882-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1486	chr3	118151651	118151652	rs558882	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.32		rs558882-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1486	chr3	118162622	118162623	rs10511378	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.32	IGSF11	rs10511378-G	0.112	1E-6	(IGFBP-1 )	0.04	[NR] ng/mL increase	Illumina [899892]	N
1486	chr3	118182376	118182377	rs1520115	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.32	NR	rs1520115-?	NR	2E-25				Affymetrix [NR]	N
1486	chr3	118183782	118183783	rs1949542	27311723	Pei YF	2016-06-16	Osteoporos Int	Association of 3q13.32 variants with hip trochanter and intertrochanter bone mineral density identified by a genome-wide association study.	Bone mineral density (hip)	6,912 European ancestry individuals	845 African American individuals, 446 Hispanic individuals, 971 European ancestry individuals	3q13.32	IGSF11	rs1949542-G	NR	4E-10	(intertrochanter)	0.11	[NR] unit decrease	Affymetrix [6879267] (imputed)	N
1486	chr3	118183782	118183783	rs1949542	27311723	Pei YF	2016-06-16	Osteoporos Int	Association of 3q13.32 variants with hip trochanter and intertrochanter bone mineral density identified by a genome-wide association study.	Bone mineral density (hip)	6,912 European ancestry individuals	845 African American individuals, 446 Hispanic individuals, 971 European ancestry individuals	3q13.32	IGSF11	rs1949542-G	NR	1E-9	(trochanter)	0.1	[NR] unit decrease	Affymetrix [6879267] (imputed)	N
1486	chr3	118195600	118195601	rs4688116	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	3q13.32		rs4688116-G	0.4033	4E-8		0.01375	[0.0088-0.0187] unit decrease	Affymetrix, Illumina [10862567] (imputed)	N
1486	chr3	118214105	118214106	rs9880522	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	3q13.32	LINC00901, IGSF11	rs9880522-?	NR	2E-8		0.03541	[0.023-0.048] unit decrease novel	Illumina [6108953] (imputed)	N
1487	chr3	118248547	118248548	rs147755126	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q13.32	NR	rs147755126-?	NR	1E-9				Illumina [7760689] (imputed)	N
1487	chr3	118259269	118259270	rs9828771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q13.32		rs9828771-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1487	chr3	118297319	118297320	rs77289770	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs77289770-A	NR	3E-8		0.356	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118302514	118302515	rs12053870	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3q13.32	IGSF11	rs12053870-G	0.545	8E-9		0.0132	[0.0087-0.0177] unit increase	Illumina [~ 250000] (imputed)	N
1487	chr3	118302514	118302515	rs12053870	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q13.32	IGSF11	rs12053870-T	0.4575	2E-8		0.011250435	[0.0073-0.0152] unit decrease	Affymetrix [11514654] (imputed)	N
1487	chr3	118302514	118302515	rs12053870	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q13.32	NR	rs12053870-G	0.542	7E-12		0.00746555	[0.0053-0.0096] unit increase	NR [9732723] (imputed)	N
1487	chr3	118302514	118302515	rs12053870	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q13.32	NR	rs12053870-G	0.541511	1E-9	(Conditioned on chr3:117822149)	0.015616364	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
1487	chr3	118307706	118307707	rs201544635	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q13.32	intergenic	rs201544635-C	NR	9E-6		0.46416104	[0.26-0.67] unit decrease	Illumina [> 6200000] (imputed)	N
1487	chr3	118328220	118328221	rs59945500	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs59945500-C	NR	4E-8		0.353	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118328384	118328385	rs114871025	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs114871025-A	NR	4E-8		0.353	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118330428	118330429	rs75459588	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs75459588-G	NR	4E-8		0.353	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118330668	118330669	rs143647278	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs143647278-T	NR	3E-8		0.358	[0.23-0.49] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118332506	118332507	rs148415407	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs148415407-A	NR	4E-8		0.353	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118334528	118334529	rs77052599	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs77052599-A	NR	4E-8		0.354	[0.23-0.48] unit decrease	Affymetrix [509886] (imputed)	N
1487	chr3	118336290	118336291	rs74331876	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q13.32		rs74331876-C	NR	5E-8		0.361	[0.23-0.49] unit decrease	Affymetrix [509886] (imputed)	N
1488	chr3	118387583	118387584	rs34724549	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	3q13.32	IGSF11	rs34724549-A	0.07	6E-6		0.39	[0.21-0.57] unit increase	Illumina [at least 4710000] (imputed)	N
1488	chr3	118387583	118387584	rs34724549	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety and major depressive disorders	972 European ancestry adult anxiety disorder cases, 832 adult major depressive disorder cases, 920 child anxiety disorder cases	NA	3q13.32	IGSF11	rs34724549-A	0.07	5E-6		0.29	[0.17-0.41] unit increase	Illumina [4710000] (imputed)	N
1488	chr3	118408646	118408647	rs73173948	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of total sugars	174,424 European ancestry individuals	NA	3q13.32	RP11-384F7.1	rs73173948-A	0.13	2E-6		1.19	[0.7-1.68] g/day increase	Affymetrix [10353649] (imputed)	N
1488	chr3	118409325	118409326	rs62273292	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q13.32	NR	rs62273292-?	NR	1E-6		4.883	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1488	chr3	118419382	118419383	rs13091704	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.32		rs13091704-A	0.2484	2E-11	(conditional-joint)	0.0109	[0.0078-0.014] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1488	chr3	118457614	118457615	rs705240	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q13.32	LOC105374060	rs705240-C	0.814988	7E-9		0.0150499	[0.0098-0.0203] unit increase	NR [16516521] (imputed)	N
1488	chr3	118461144	118461145	rs1717204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.32		rs1717204-A	0.1818	1E-10		0.0117	[0.0082-0.0152] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1489	chr3	118524651	118524652	rs604781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q13.32	Intergenic	rs604781-T	0.1927	2E-8	(MTAG)	0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1489	chr3	118524651	118524652	rs604781	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.32	Intergenic	rs604781-T	0.196	3E-12	(MTAG)	0.0115	[0.0084-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1489	chr3	118614734	118614735	rs7634976	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q13.32		rs7634976-A	0.849	5E-11		0.011	[0.0071-0.0149] unit increase	NR [NR] (imputed)	N
1489	chr3	118615462	118615463	rs1879553	26227905	Hu Y	2015-07-31	Mol Neurobiol	A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland.	Parkinson's disease	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q13.32	LOC285194, IGSF11	rs1879553-?	NR	1E-6		2.83	[1.98-4.04]	Illumina [862198]	N
1490	chr3	118656514	118656515	rs7633584	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (nose roundness 1)	6,169 Latin American individuals	NA	3q13.32		rs7633584-?	NR	2E-8				Illumina [8703729] (imputed)	N
1490	chr3	118656514	118656515	rs7633584	33547071	Bonfante B	2021-02-05	Sci Adv	A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.	Facial morphology (columella inclination)	6,169 Latin American individuals	NA	3q13.32		rs7633584-?	NR	4E-6				Illumina [8703729] (imputed)	N
1490	chr3	118675195	118675196	rs6792805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q13.32		rs6792805-A	0.7356	2E-8		0.009	[0.0059-0.0121] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1490	chr3	118675195	118675196	rs6792805	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q13.32	Intergenic	rs6792805-A	0.7356	3E-9	(MTAG)	0.0088	[0.0059-0.0117] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1490	chr3	118676491	118676492	rs4687833	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	3q13.32	NR	rs4687833-?		4E-6	(AA)			Illumina [up to 524000]	N
1490	chr3	118739835	118739836	rs35867	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q13.32	IGSF11	rs35867-?		6E-16				Affymetrix, Illumina [NR] (imputed)	N
1490	chr3	118745935	118745936	rs2160050	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3q13.32	IGSF11	rs2160050-?	NR	9E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1491	chr3	118757030	118757031	rs2866466	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3q13.32	IGSF11	rs2866466-?	NR	4E-8		0.0148022	[0.0095-0.0201] unit decrease	NR [7306098]	N
1491	chr3	118796489	118796490	rs114662473	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3q13.32	NR	rs114662473-A	0.06	6E-7	(Bray-Curtis metric)	4.863075	NR z-score increase	Illumina [5293637] (imputed)	N
1491	chr3	118840110	118840111	rs11914494	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3q13.32	NR	rs11914494-?		1E-6	(African)			Illumina [~ 5140000] (imputed)	N
1491	chr3	118844484	118844485	rs11926663	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3q13.32	NR	rs11926663-?		1E-6	(African)			Illumina [~ 5140000] (imputed)	N
1491	chr3	118850866	118850867	rs141827060	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3q13.32	NR	rs141827060-?		1E-6	(African)			Illumina [~ 5140000] (imputed)	N
1491	chr3	118859695	118859696	rs11923949	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3q13.32	NR	rs11923949-?		3E-6	(African)			Illumina [~ 5140000] (imputed)	N
1491	chr3	118865617	118865618	rs149982219	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	3q13.32	TEX55 and IGSF11	rs149982219-A	0.325	5E-11		0.03231		Illumina [243345]	N
1492	chr3	118908225	118908226	rs9835060	30889042	Innocenti F	2019-03-18	Pharmacogenet Genomics	An initial genetic analysis of gemcitabine-induced high-grade neutropenia in pancreatic cancer patients CALGB 80303 (Alliance).	Gemcitabine-induced early high-grade neutropenia in pancreatic cancer	294 European ancestry cases	NA	3q13.32	UPK1B, C3orf30, B4GALT4	rs9835060-?	NR	5E-6		2.59	[1.7-3.94]	Illumina [457310]	N
1492	chr3	118916619	118916620	rs4472046	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.32	NR	rs4472046-T	0.01045	2E-9	(GATM)	3.212	NR unit increase	Illumina [1671387] (imputed)	N
1492	chr3	118935998	118935999	rs6438504	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	3q13.32	B4GALT4	rs6438504-?	NR	9E-6	(AUC)			NR [2092490]	N
1492	chr3	118948255	118948256	rs4568126	28470677	Tang H	2017-05-03	Int J Cancer	Genetic polymorphisms associated with pancreatic cancer survival: a genome-wide association study.	Survival in pancreatic cancer	868 European ancestry cases	820 European ancestry cases	3q13.32	B4GALT4	rs4568126-C	0.38	6E-6		1.18	[1.10-1.27]	NR [7738399] (imputed)	N
1492	chr3	118950498	118950499	rs7628585	32652002	Dauber A	2020-07-11	J Clin Endocrinol Metab	A Genomewide Pharmacogenetic Study of Growth Hormone Responsiveness.	First year height change in growth hormone-treated short stature	504 European ancestry individuals, 88 individuals	113 Brazilian individuals	3q13.32	B4GALT4	rs7628585-A	0.182	6E-7		0.292	[0.18-0.41] unit increase	Illumina [~ 2000000] (imputed)	N
1492	chr3	118960963	118960964	rs72655914	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	3q13.32		rs72655914-T	0.02253	3E-6		2.278	[1.614-3.216]	Affymetrix [7975321] (imputed)	N
1492	chr3	118993530	118993530	rs5852196	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q13.32	B4GALT4-AS1	rs5852196-AT	0.238946	1E-9		0.015862456	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1492	chr3	118994545	118994546	rs10511385	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q13.32		rs10511385-T	0.11	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
1492	chr3	118994958	118994959	rs56007616	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.32	NR	rs56007616-A	0.8792	3E-10	(Lateral Occipital)	25.687162	[17.73-33.64] unit increase	Affymetrix, Illumina [NR]	N
1492	chr3	118995378	118995379	rs16829649	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q13.32	NR	rs16829649-A	0.8893	1E-10	(Pericalcarine)	10.604899	[7.39-13.82] unit increase	Affymetrix, Illumina [NR]	N
1492	chr3	118997704	118997705	rs75504175	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (7 days post influenza vaccination)	298 individuals	NA	3q13.32	NR	rs75504175-?	NR	2E-9			[NR]	NR [1665663]	N
1492	chr3	118997938	118997939	rs9834125	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q13.32	B4GALT4-AS1	rs9834125-G	0.239619	3E-10		0.016480846	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1493	chr3	119016580	119016581	rs7637171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q13.32		rs7637171-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1493	chr3	119022635	119022636	rs112869065	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q13.33		rs112869065-T	0.16	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
1493	chr3	119022635	119022636	rs112869065	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q13.33	NR	rs112869065-T	0.1644	4E-11				NR [9056863] (imputed)	N
1493	chr3	119045616	119045617	rs7612159	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q13.33		rs7612159-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1493	chr3	119084330	119084331	rs17203055	23894747	Aberg KA	2013-02-01	JAMA Psychiatry	A comprehensive family-based replication study of schizophrenia genes.	Schizophrenia	11,185 European ancestry cases, 10,768 European ancestry controls	1,262 African American ancestry individuals, 2,740 European ancestry individuals, 2,296 Asian ancestry individuals	3q13.33	ARHGAP31	rs17203055-?	0.87	5E-6	(EA)	1.43	[NR]	NR [1085772] (imputed)	N
1493	chr3	119109768	119109769	rs139600783	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	3q13.33		rs139600783-T	0.0065	5E-9		5.84541	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1493	chr3	119109768	119109769	rs139600783	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q13.33		rs139600783-T	0.0073	3E-9		0.51260525	[0.35-0.68] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1493	chr3	119114514	119114515	rs1530687	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q13.33		rs1530687-?	NR	8E-10				NR [~ 8900000] (imputed)	N
1493	chr3	119115531	119115532	rs62266700	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs62266700-G	0.408094	7E-10				Affymetrix, Illumina [23472807] (imputed)	N
1493	chr3	119116149	119116150	rs9884090	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	3q13.33	POGLUT1, TIMMDC1, CD80, ARHGAP31	rs9884090-?	0.84	2E-10		1.2048193		Illumina [4723365]	N
1493	chr3	119118795	119118796	rs11712165	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	3q13.33	ARHGAP31	rs11712165-G		4E-10		1.1212375		Illumina [252970]	N
1493	chr3	119118795	119118796	rs11712165	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q13.33	CD80, KTELC1	rs11712165-C	0.39	8E-9		1.13	[1.08-1.17]	Illumina [292387]	N
1493	chr3	119121678	119121679	rs75203710	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.33	POGLUT1	rs75203710-C	0.07	4E-16	(Protein O-glucosyltransferase 1, POGLUT1.6467.65.3)	0.39	[0.29-0.49] unit increase	Affymetrix [10572788] (imputed)	N
1493	chr3	119123277	119123278	rs61579022	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3q13.33	ARHGAP31	rs61579022-A	0.39	1E-8		1.11		Illumina [139553]	N
1494	chr3	119147957	119147958	rs16829840	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)	8,631 European ancestry individuals	NA	3q13.33	TMEM39A	rs16829840-T	0.014	3E-8		0.46	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1494	chr3	119150088	119150089	rs3732421	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	3q13.33	CD80	rs3732421-?	0.66	3E-13		1.3513513	[1.25-1.47]	Illumina [776516]	N
1494	chr3	119174382	119174383	rs12636784	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3q13.33	TMEM39A, TIMMDC1	rs12636784-?	NR	1E-11		1.25	[1.16-1.35]	Illumina [at least 5000000] (imputed)	N
1494	chr3	119191397	119191398	rs6794833	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POGLUT1	5,363 Icelandic ancestry individuals	NA	3q13.33		rs6794833-T	0.4607	5E-109		0.405732	[0.37-0.44] unit increase	Illumina [7506463] (imputed)	N
1494	chr3	119209026	119209027	rs12695386	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3q13.33		rs12695386-C	NR	8E-10		0.266667	[0.18-0.35] unit decrease	NR [5275424] (imputed)	N
1494	chr3	119213219	119213220	rs3088258	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.33		rs3088258-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1494	chr3	119217108	119217109	rs115511641	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein POGLUT1	5,363 Icelandic ancestry individuals	NA	3q13.33		rs115511641-C	0.07116	7E-120		0.823357	[0.75-0.89] unit increase	Illumina [7506463] (imputed)	N
1494	chr3	119217108	119217109	rs115511641	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.33	POGLUT1	rs115511641-G	0.9296875	8E-68	(POGLUT1, 6467_65_3)	0.81934094	[0.73-0.91] unit decrease	Illumina [> 1000000] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3q13.33		rs2293370-A	NR	2E-31		0.285876	[0.24-0.33] unit decrease	NR [2787054] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	3q13.33		rs2293370-A	NR	6E-25		0.299009	[0.24-0.36] unit decrease	NR [5054572] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	30643196	Hitomi Y	2019-01-14	Sci Rep	POGLUT1, the putative effector gene driven by rs2293370 in primary biliary cholangitis susceptibility locus chromosome 3q13.33.	Primary biliary cholangitis	1,855 Japanese ancestry cases, 1,719 Japanese ancestry controls	NA	3q13.33	TIMMDC1	rs2293370-A	NR	6E-9		1.3736264		Affymetrix [NR] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	3q13.33	C3orf1, CD80	rs2293370-A	0.288577154308617	1E-6		1.3385916	[1.189-1.507]	Affymetrix [425290]	N
1494	chr3	119219933	119219934	rs2293370	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	3q13.33	TMEM39A, CD80	rs2293370-G	0.86	4E-15		1.42	NR	Illumina [1143634] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	23000144	Nakamura M	2012-09-18	Am J Hum Genet	Genome-wide association study identifies TNFSF15 and POU2AF1 as susceptibility loci for primary biliary cirrhosis in the Japanese population.	Primary biliary cholangitis	487 Japanese ancestry cases, 476 Japanese ancestry controls	787 Japanese ancestry cases, 615 Japanese ancestry controls	3q13.33	CD80	rs2293370-C	NR	3E-9		1.48	[1.29-1.68]	Affymetrix [421245]	N
1494	chr3	119219933	119219934	rs2293370	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	3q13.33	TMEM39A, POGLUT1, TIMMDC1, CD80	rs2293370-G	0.8	7E-16		1.39	[1.29-1.52]	Illumina [237619] (imputed)	N
1494	chr3	119219933	119219934	rs2293370	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	C3orf1, TMEM39A	rs2293370-G	NR	3E-9		1.13	[1.11-1.15]	Illumina [465434]	N
1494	chr3	119219933	119219934	rs2293370	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3q13.33	CD80	rs2293370-G	0.80	3E-11		1.35	[1.23-1.47]	Illumina [507467]	N
1494	chr3	119221063	119221064	rs11714843	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q13.33		rs11714843-A	NR	8E-13		0.0849	[0.062-0.108] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1494	chr3	119221063	119221064	rs11714843	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3q13.33	CD80, TIMMDC1	rs11714843-A	0.184	3E-11		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1494	chr3	119221063	119221064	rs11714843	23603761	Hinks A	2013-04-21	Nat Genet	Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis.	Juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular)	2,816 European ancestry cases, 13,056 European ancestry controls	NA	3q13.33	TIMMDC1, CD80	rs11714843-A	0.18	4E-7	(additive model)	1.22	[1.13-1.31]	Illumina [123003]	N
1494	chr3	119222455	119222456	rs1131265	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	3q13.33	TMEM39A1, TIMMDC1	rs1131265-?	NR	1E-9		1.2345679	[1.15-1.32]	Illumina [at least 5000000] (imputed)	N
1494	chr3	119222455	119222456	rs1131265	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q13.33	TIMMDC1	rs1131265-C	0.81	1E-23		1.17		Illumina [161311]	N
1494	chr3	119222455	119222456	rs1131265	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	3q13.33	NR	rs1131265-G		5E-9		1.42	[1.26-1.60]	Illumina [109812]	N
1494	chr3	119227246	119227247	rs4688011	22354554	Thompson SD	2012-02-21	Arthritis Rheum	Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13.	Arthritis (juvenile idiopathic)	814 European ancestry cases, 658 European ancestry controls, 2,400 controls	1,744 European ancestry cases, 7,010 European ancestry controls	3q13.33	C3orf1	rs4688011-T	0.19	1E-7		1.23	[1.13-1.33]	Affymetrix [561137]	N
1494	chr3	119228507	119228508	rs9843355	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q13.33	TIMMDC1	rs9843355-G	NR	4E-30		1.1525	NR	Affymetrix, Illumina [8278136] (imputed)	N
1494	chr3	119229485	119229486	rs4688013	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q13.33	TIMMDC1	rs4688013-A	0.191322	6E-13		0.08327685	[0.061-0.106] unit increase	Affymetrix [7288503] (imputed)	N
1494	chr3	119237726	119237730	rs144104218	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	3q13.33	TIMMDC1	rs144104218-A	0.31	2E-30		0.833	[0.8-0.86]	Illumina [11270530] (imputed)	N
1494	chr3	119240129	119240130	rs11720158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q13.33		rs11720158-A	NR	1E-8		0.0145	[0.0094-0.0196] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1494	chr3	119243854	119243855	rs1599795	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q13.33		rs1599795-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1494	chr3	119251950	119251951	rs112225152	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3q13.33	CD80	rs112225152-G	NR	6E-6		0.21249147	[0.12-0.3] unit increase	Affymetrix [9576485] (imputed)	N
1494	chr3	119260865	119260866	rs9877891	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q13.33	CD80	rs9877891-C	0.18	3E-8				NR [> 9500000] (imputed)	N
1494	chr3	119260865	119260866	rs9877891	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q13.33	CD80	rs9877891-C	0.17930100000000004	3E-8		1.0443834	[1.02851688115604-1.06049480265224]	NR [9572556] (imputed)	N
1494	chr3	119260943	119260944	rs6804441	23273568	Yang W	2012-12-27	Am J Hum Genet	Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.	Systemic lupus erythematosus	1,656 Han Chinese ancestry cases, 3,394 Han Chinese ancestry controls	3,256 Han Chinese ancestry cases, 5,667 Han Chinese ancestry controls, 453 Thai ancestry cases, 963 Thai ancestry controls	3q13.33	CD80	rs6804441-A	0.61	3E-16		1.2658		Illumina [2100739] (imputed)	N
1494	chr3	119261374	119261375	rs7648642	24080446	Rudolph A	2013-11-04	Endocr Relat Cancer	Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study.	Lobular breast cancer (menopausal hormone therapy interaction)	541 European ancestry cases	676 European ancestry cases, 9,266 European ancestry controls	3q13.33	CD80	rs7648642-?		5E-6		1.5625	[1.28-1.89]	Illumina [2500000] (imputed)	N
1494	chr3	119268065	119268065	rs35473497	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	3q13.33	NR	rs35473497-TG		8E-6		0.0711	[0.04-0.102] SD units decrease	NR [10700000] (imputed)	N
1494	chr3	119272390	119272391	rs2222631	25862617	Zhang Y	2015-04-10	Ann Rheum Dis	Genome-wide search followed by replication reveals genetic interaction of CD80 and ALOX5AP associated with systemic lupus erythematosus in Asian populations.	Systemic lupus erythematosus	1,656 Chinese ancestry cases, 3,394 Chinese ancestry controls	2,152 Chinese ancestry cases, 2,476 Chinese ancestry controls, 460 Thai ancestry cases, 965 Thai ancestry controls	3q13.33	CD80	rs2222631-?		5E-8		1.16	[1.10-1.23]	Illumina [up to 493645]	N
1495	chr3	119288413	119288414	rs59374417	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	3q13.33	CD80	rs59374417-C	0.13	4E-10		1.34	[NR]	Illumina [495821]	N
1495	chr3	119320604	119320605	rs75442702	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTAG1A	5,365 Icelandic ancestry individuals	NA	3q13.33		rs75442702-A	0.02926	2E-23		0.554973	[0.45-0.66] unit decrease	Illumina [7506463] (imputed)	N
1495	chr3	119323012	119323013	rs1525838	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTAG1A	5,365 Icelandic ancestry individuals	NA	3q13.33		rs1525838-G	0.1946	1E-34		0.281443	[0.24-0.33] unit increase	Illumina [7506463] (imputed)	N
1495	chr3	119360620	119360621	rs4687869	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CTAG1A	5,365 Icelandic ancestry individuals	NA	3q13.33		rs4687869-C	0.233	5E-16		0.177985	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1495	chr3	119389467	119389468	rs80226492	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	3q13.33	COX17	rs80226492-T	0.026	3E-7		0.18	NR unit increase	Illumina [6417232] (imputed)	N
1495	chr3	119392242	119392243	rs115786849	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	3q13.33	COX17	rs115786849-A	0.026	3E-7		0.18	NR unit increase	Illumina [6417232] (imputed)	N
1496	chr3	119503004	119503005	rs2472670	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q13.33	NR	rs2472670-?	NR	1E-13				Affymetrix [NR]	N
1496	chr3	119529112	119529113	rs3732356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q13.33		rs3732356-T	NR	2E-11		0.0288	[0.02-0.037] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1496	chr3	119529112	119529113	rs3732356	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q13.33		rs3732356-T	NR	6E-16		0.0319	[0.024-0.04] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1496	chr3	119529112	119529113	rs3732356	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q13.33	NR	rs3732356-T	NR	3E-11		0.0337	[0.024-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1496	chr3	119529112	119529113	rs3732356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q13.33	NR1I2	rs3732356-G	0.0662188	9E-15		0.0299853	[0.022-0.038] unit increase	Affymetrix [NR] (imputed)	N
1496	chr3	119529112	119529113	rs3732356	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q13.33	NR1I2	rs3732356-G	0.0662205	2E-20		0.036854	[0.029-0.045] unit increase	Affymetrix [NR] (imputed)	N
1496	chr3	119529112	119529113	rs3732356	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q13.33	NR1I2	rs3732356-T	0.8483	2E-10		0.0291	[0.02-0.038] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1496	chr3	119529257	119529258	rs56150145	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.33	NR	rs56150145-T	0.01045	4E-12	(MYL6)	0.1065	NR unit increase	Illumina [1671387] (imputed)	N
1496	chr3	119529257	119529258	rs56150145	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.33	NR	rs56150145-T	0.01045	2E-11	(NAGA)	0.001944	NR unit increase	Illumina [1671387] (imputed)	N
1496	chr3	119530857	119530858	rs3732357	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q13.33	NR1I2	rs3732357-A	0.712328	1E-11		0.01659111	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1496	chr3	119531655	119531656	rs779954489	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Direct bilirubin levels	372,420 European ancestry individuals	NA	3q13.33		rs779954489-?	NR	3E-11		0.552054	[0.38-0.72] unit increase	NR [9800000] (imputed)	N
1496	chr3	119531655	119531656	rs779954489	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	3q13.33		rs779954489-?	NR	5E-12		0.483038	[0.33-0.64] unit increase	NR [9800000] (imputed)	N
1496	chr3	119532651	119532652	rs2472682	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q13.33	NR	rs2472682-A	0.343558	2E-8		0.0120357	[0.0078-0.0162] unit increase	NR [NR]	N
1496	chr3	119536428	119536429	rs3732359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q13.33		rs3732359-A	NR	5E-14		0.0138	[0.01-0.017] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1496	chr3	119536428	119536429	rs3732359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q13.33		rs3732359-A	NR	1E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1496	chr3	119536428	119536429	rs3732359	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3q13.33	NR1I2	rs3732359-G	0.21988	5E-12		0.0174313	[0.012-0.022] unit increase	Affymetrix [NR] (imputed)	N
1497	chr3	119546196	119546197	rs4261913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	3q13.33		rs4261913-C	0.3806	3E-9		0.0251693	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
1497	chr3	119546196	119546197	rs4261913	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	3q13.33		rs4261913-C	0.3806	1E-9		0.0256662	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1497	chr3	119546196	119546197	rs4261913	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q13.33		rs4261913-T	NR	3E-13		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1497	chr3	119546196	119546197	rs4261913	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q13.33	GSK3B	rs4261913-T	0.621772	5E-15		0.018160766	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1497	chr3	119560605	119560606	rs6805251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	3q13.33		rs6805251-T	0.384465	3E-8		0.0231387	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
1497	chr3	119560605	119560606	rs6805251	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3q13.33	GSK3B	rs6805251-T	0.381	4E-8	(Trans-ethnic initial)	0.02	[0.013-0.027] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1497	chr3	119560605	119560606	rs6805251	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q13.33	GSK3B	rs6805251-T	0.39	1E-8		0.02	[NR] unit increase	NR [NR] (imputed)	N
1497	chr3	119571858	119571859	rs7641045	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q13.33		rs7641045-C	NR	3E-9		0.0141	[0.0094-0.0188] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1497	chr3	119580366	119580367	rs140662893	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 4, facial height related to vertical position of gnathion)	2,187 European ancestry individuals	NA	3q13.33	NR	rs140662893-C	0.008482	3E-6		0.7781	[0.45-1.1] unit decrease	Illumina [10677593] (imputed)	N
1497	chr3	119584276	119584277	rs140442947	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Hippocampal volume in Alzheimer's disease dementia	190 European ancestry Alzheimer's disease dementia cases	NA	3q13.33	GSK3B, C3orf15, NR1I2, PHBP8, GPR156	rs140442947-C	0.01	1E-7		2.83	[1.85-3.81] unit increase	Illumina [8437147] (imputed)	N
1497	chr3	119598724	119598725	rs4491945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q13.33		rs4491945-G	0.437289	4E-8		0.0149016	[0.0096-0.0202] unit increase	Illumina [13479924] (imputed)	N
1497	chr3	119615374	119615375	rs13321783	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	3q13.33		rs13321783-T	0.604516	2E-8		0.0236239	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
1498	chr3	119697031	119697032	rs58605236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q13.33	NR	rs58605236-A	0.373119	3E-12		0.013899	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1498	chr3	119716801	119716802	rs149018603	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.33	NR	rs149018603-G	0.01045	4E-12	(MYL6)	0.1065	NR unit increase	Illumina [1671387] (imputed)	N
1498	chr3	119716801	119716802	rs149018603	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.33	NR	rs149018603-G	0.01045	2E-11	(NAGA)	0.001944	NR unit increase	Illumina [1671387] (imputed)	N
1498	chr3	119736593	119736594	rs1154595	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q13.33		rs1154595-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1498	chr3	119752367	119752368	rs78883820	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q13.33	NR	rs78883820-A	0.05052	1E-8	(MYL6)	0.04713	NR unit increase	Illumina [1671387] (imputed)	N
1498	chr3	119757012	119757013	rs1870931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q13.33		rs1870931-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1498	chr3	119786886	119786887	rs334563	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs334563-A	0.408151	8E-11				Affymetrix, Illumina [23114412] (imputed)	N
1498	chr3	119788512	119788512	rs570238285	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q13.33	GSK3B	rs570238285-GA	0.355381	3E-11		0.015670333	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1498	chr3	119788512	119788512	rs570238285	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q13.33	GSK3B	rs570238285-?	NR	1E-8		0.0156	[0.011-0.02] unit increase	Affymetrix [5701386] (imputed)	N
1498	chr3	119788526	119788526	rs201513189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q13.33		rs201513189-GA	NR	5E-9		0.0148	[0.0099-0.0197] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1498	chr3	119788526	119788526	rs201513189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q13.33		rs201513189-GA	NR	5E-12		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1499	chr3	119813281	119813282	rs334558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q13.33		rs334558-G	NR	1E-18		0.0181	[0.014-0.022] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1499	chr3	119813281	119813282	rs334558	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3q13.33		rs334558-G	NR	5E-12		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1499	chr3	119818584	119818585	rs189174	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q13.33	GSK3B	rs189174-G	0.661716	2E-19		0.00215722	[0.0017-0.0026] unit decrease	Affymetrix [13995440] (imputed)	N
1499	chr3	119818584	119818585	rs189174	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q13.33	GSK3B, GPR156	rs189174-C	0.34	1E-12		7.09	z-score increase	Affymetrix [4311822] (imputed)	N
1499	chr3	119870657	119870658	rs6438565	33382417	Batai K	2020-12-31	J Nutr	Genome-Wide Association Study of Response to Selenium Supplementation and Circulating Selenium Concentrations in Adults of European Descent.	Response to selenium supplementation (change in plasma selenium concentration)	428 European ancestry individuals	NA	3q13.33	GPR156	rs6438565-?	0.395	1E-5		11.7	[6.57-16.83] unit increase	Illumina [7663546] (imputed)	N
1499	chr3	119884662	119884663	rs1488763	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	3q13.33	GPR156	rs1488763-?		9E-6	(EA)	0.116307475	[0.065-0.168] unit decrease	Illumina [13620258] (imputed)	N
1499	chr3	119884662	119884663	rs1488763	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	3q13.33	GPR156	rs1488763-?		9E-6	(African American)	0.116307475	[0.065-0.168] unit decrease	Illumina [13620258] (imputed)	N
1499	chr3	119926379	119926380	rs35902169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs35902169-T	0.283091	4E-11				Affymetrix, Illumina [23467995] (imputed)	N
1499	chr3	119926379	119926380	rs35902169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q13.33	NR	rs35902169-T	0.331938	1E-11		0.013447	[0.0096-0.0173] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1500	chr3	119941320	119941321	rs9833127	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q13.33	NR	rs9833127-G	NR	3E-6	(GEE model)	0.78263	[0.45-1.11] unit decrease	NR [NR] (imputed)	N
1500	chr3	120017479	120017480	rs796825	22174851	Lingappa JR	2011-12-12	PLoS One	Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.	HIV-1 susceptibility	496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples	NA	3q13.33	LRRC58	rs796825-?	NR	8E-6				Illumina [990115]	N
1500	chr3	120030939	120030940	rs2638592	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	3q13.33	NR	rs2638592-C	0.235119	7E-6		1.14	[1.08-1.21]	Illumina [8992756] (imputed)	N
1500	chr3	120043835	120043836	rs10511400	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q13.33	LRRC58	rs10511400-T	NR	8E-6		0.157	[0.088-0.226] unit increase	Illumina [628922]	N
1500	chr3	120050155	120050156	rs201166538	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	3q13.33		rs201166538-?	NR	7E-20		0.54536	[0.43-0.67] unit increase	NR [9800000] (imputed)	N
1501	chr3	120082781	120082782	rs2030413	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Inflammatory bowel disease	498 European ancestry cases, 935 European ancestry controls	NA	3q13.33		rs2030413-A	0.464	4E-7		1.5		Illumina [5411567] (imputed)	N
1501	chr3	120082781	120082782	rs2030413	35232999	Garcia-Etxebarria K	2022-03-01	Sci Rep	Local genetic variation of inflammatory bowel disease in Basque population and its effect in risk prediction.	Crohn's disease	284 European ancestry cases, 935 European ancestry controls	NA	3q13.33		rs2030413-A	0.464	2E-6		1.6		Illumina [5411261] (imputed)	N
1501	chr3	120101526	120101527	rs2702164	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (winter)	93 Hutterite individuals	NA	3q13.33	NR	rs2702164-?		6E-6	(genus_Lactobacillus)	0.6233511	[0.37-0.88] unit decrease	Affymetrix [211319]	N
1501	chr3	120151283	120151284	rs9854823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q13.33		rs9854823-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1501	chr3	120169247	120169248	rs1147707	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FSTL1	5,360 Icelandic ancestry individuals	NA	3q13.33		rs1147707-T	0.3665	1E-61		0.302498	[0.27-0.34] unit decrease	Illumina [7506463] (imputed)	N
1501	chr3	120169247	120169248	rs1147707	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q13.33	FSTL1	rs1147707-C	0.66640625	1E-26	(FSTL1, 13112_179_3)	0.2771489	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1501	chr3	120169247	120169248	rs1147707	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q13.33	FSTL1	rs1147707-T	0.389	1E-16	(Follistatin-related protein 1, FSTL1.13112.179.3)	0.21	[0.15-0.27] unit decrease	Affymetrix [10572788] (imputed)	N
1502	chr3	120233964	120233965	rs76462595	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q13.33	NR	rs76462595-?	NR	5E-6		0.0078258	[0.0045-0.0112] unit increase	Affymetrix [805426] (imputed)	N
1502	chr3	120236328	120236329	rs9289146	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	FSTL1	rs9289146-A	0.09	7E-6	(RQmax)	0.04	[NR] increase	Illumina [899892]	N
1503	chr3	120425330	120425331	rs13077101	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	GTF2E1, RABL3	rs13077101-G	0.177	2E-7	(AST/ALT)	0.03	[NR] unit increase	Illumina [899892]	N
1503	chr3	120425330	120425331	rs13077101	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q13.33	GTF2E1, RABL3	rs13077101-G	0.177	1E-6	(ALT/AST)	0.03	[NR] unit increase	Illumina [899892]	N
1504	chr3	120518356	120518357	rs10511404	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor alpha levels	3,454 Finnish ancestry individuals	NA	3q13.33	NR	rs10511404-G		6E-6		0.1336	[0.075-0.192] SD units decrease	NR [10700000] (imputed)	N
1504	chr3	120585314	120585315	rs322458	23223146	Le Clerc S	2012-12-06	J Invest Dermatol	A genome-wide association study in Caucasian women points out a putative role of the STXBP5L gene in facial photoaging.	Aging (facial)	502 European ancestry females	NA	3q13.33	FBXO40, STXBP5L	rs322458-G	NR	2E-8				Illumina [795063]	N
1505	chr3	120604115	120604116	rs116538984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs116538984-A	NR	1E-12		0.0577	[0.042-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1505	chr3	120615514	120615515	rs511841	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	3q13.33	STXBP5L	rs511841-C	NR	2E-7	(AA)	5.185	z score decrease	Affymetrix, Illumina [up to 1994688]	N
1505	chr3	120650087	120650088	rs79866578	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs79866578-A	NR	4E-9		0.0462	[0.031-0.062] unit decrease	Affymetrix [9000000] (imputed)	N
1506	chr3	120754927	120754928	rs138512161	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q13.33	STXBP5L	rs138512161-A	0.0116275324324188	3E-7	(G_Ruminococcus_HB)	1.57801	[0.97-2.18] unit decrease	Illumina [7711310] (imputed)	N
1507	chr3	120853970	120853971	rs191268061	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	3q13.33	NR	rs191268061-?	NR	9E-6		1.8666	[0.72-3.01] unit increase	Illumina [at least 560000] (imputed)	N
1507	chr3	120891589	120891590	rs7620938	29730043	Li J	2018-05-02	Schizophr Res	Identifying the genetic risk factors for treatment response to lurasidone by genome-wide association study: A meta-analysis of samples from three independent clinical trials.	Response to lurasidone in schizophrenia	264 European ancestry cases, 158 African American ancestry cases	NA	3q13.33	STXBP5L	rs7620938-?	NR	3E-7	(AA)	5.116	z score decrease	Affymetrix, Illumina [up to 1994688]	N
1508	chr3	121035934	121035935	rs16832236	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3q13.33	NR	rs16832236-?	NR	6E-6	(AA)	18.32	[16.24-20.4]	Illumina [905956]	N
1508	chr3	121084466	121084467	rs11707293	24554482	Leger PD	2014-02-20	J Neurovirol	Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.	Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)	40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls	NA	3q13.33	STXBP5L	rs11707293-?		5E-6	(Hispanic)	14.2	[NR]	Illumina [936149]	N
1508	chr3	121100413	121100414	rs17740072	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Paracentral lobule volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q13.33	STXBP5L	rs17740072-?		3E-6				Illumina [4322238] (imputed)	N
1509	chr3	121124368	121124369	rs116711573	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs116711573-T	NR	2E-9		0.0421	[0.028-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1509	chr3	121149813	121149814	rs114485238	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs114485238-T	NR	3E-12		0.0514	[0.037-0.066] unit increase	Affymetrix [9000000] (imputed)	N
1509	chr3	121154192	121154193	rs6800901	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q13.33	NR	rs6800901-A	0.34	2E-6	(Any IgH translocation vs. controls)	1.31	[1.17-1.47]	Illumina [414804] (imputed)	N
1509	chr3	121207636	121207637	rs3218642	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Cutaneous mastocytosis (childhood)	78 European ancestry cases, 5,606 European ancestry controls	NA	3q13.33	POLQ	rs3218642-T	0.02792	3E-8		3.979	[3.45-4.51]	Illumina [281811]	N
1510	chr3	121295346	121295347	rs79724292	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs79724292-A	0.718535	4E-17				Affymetrix, Illumina [17210439] (imputed)	N
1510	chr3	121297232	121297233	rs11709159	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q13.33	NR	rs11709159-C	0.720389	4E-19		0.019035	[0.015-0.023] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1510	chr3	121298303	121298304	rs58817659	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q13.33	ARGFX	rs58817659-T	0.279891	7E-13		0.017814921	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1510	chr3	121300727	121300728	rs13096657	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	3q13.33	ARGFX	rs13096657-C	0.8603	4E-7	(Uptake slope)	0.3713	[0.23-0.51] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1510	chr3	121300727	121300728	rs13096657	26256467	Wojczynski MK	2015-07-03	Metabolism	Genome-wide association study of triglyceride response to a high-fat meal among participants of the NHLBI Genetics of Lipid Lowering Drugs and Diet Network (GOLDN).	Postprandial triglyceride response to high fat diet meal	872 European ancestry individuals	843 Old Order Amish individuals	3q13.33	ARGFX	rs13096657-C	0.8601	9E-7	(AUI)	0.3634	[0.22-0.51] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1510	chr3	121319448	121319449	rs74790649	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter alcoholic beverage consumption	336,448 European ancestry individuals	39,924 European ancestry individuals	3q13.33	FBXO40	rs74790649-G	0.9823	4E-7		0.0196	[0.012-0.027] unit increase	Affymetrix [~ 7740000] (imputed)	N
1510	chr3	121323007	121323008	rs3845865	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs3845865-G	NR	1E-10		0.0255	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr3	121325419	121325420	rs77357569	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs77357569-T	NR	3E-12		0.022	[0.016-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr3	121326675	121326676	rs9869689	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4+ carriers	10,352 cases, 9,207 controls	1,250 European ancestry cases, 536 European ancestry controls	3q13.33	FBXO40	rs9869689-T	0.1	3E-6		1.21	[1.12-1.31]	NR [NR]	N
1510	chr3	121340535	121340536	rs4676684	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs4676684-C	NR	9E-10		0.0177	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1510	chr3	121344139	121344140	rs3772130	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q13.33	FBXO40	rs3772130-?	0.2284	6E-6	(PC1)			Illumina [475971]	N
1510	chr3	121345093	121345094	rs3772128	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q13.33	FBXO40	rs3772128-T	0.298335	4E-9		0.014490262	[0.0097-0.0193] unit decrease	Affymetrix [93095623] (imputed)	N
1510	chr3	121345561	121345562	rs61753287	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		FBXO40	rs61753287-?	NR	7E-10	(female)	0.675478	[NR] unit increase	Affymetrix [NR] (imputed)	N
1511	chr3	121378926	121378927	rs12493927	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs12493927-A	NR	5E-9		0.0239	[0.016-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr3	121394706	121394707	rs6791046	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q13.33	GOLGB1	rs6791046-G	0.299297	4E-12		0.017052209	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1511	chr3	121415609	121415610	rs33988592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q13.33	NR	rs33988592-A	0.296668	4E-12		0.01371	[0.0098-0.0176] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1511	chr3	121415609	121415610	rs33988592	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q13.33	NR	rs33988592-A	0.298293	9E-11		0.013593	[0.0095-0.0177] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1511	chr3	121415713	121415714	rs144385283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q13.33	NR	rs144385283-G	NR	4E-16		0.0914	[0.069-0.113] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr3	121415713	121415714	rs144385283	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs144385283-G	NR	7E-46		0.1593	[0.14-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr3	121446899	121446900	rs1919555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs1919555-A	NR	1E-9		0.0335	[0.023-0.044] unit increase	Affymetrix [9000000] (imputed)	N
1511	chr3	121452338	121452339	rs56382357	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs56382357-C	0.414487	6E-10				Affymetrix, Illumina [24588908] (imputed)	N
1511	chr3	121452631	121452632	rs77452441	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs77452441-G	NR	3E-15		0.0545	[0.041-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr3	121459588	121459589	rs12498138	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs12498138-A	NR	1E-16		0.0369	[0.028-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1511	chr3	121469224	121469225	rs1574115	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q13.33	GOLGB1	rs1574115-T	0.778593	1E-10		0.00175267	[0.0012-0.0023] unit decrease	Affymetrix [13995440] (imputed)	N
1511	chr3	121469645	121469646	rs1573819	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs1573819-C	0.254705	3E-10				Affymetrix, Illumina [24246363] (imputed)	N
1511	chr3	121486774	121486779	rs113616982	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q13.33		rs113616982-G	NR	8E-9		0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1512	chr3	121507230	121507231	rs1141528	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q13.33	IQCB1	rs1141528-T		8E-9		0.018	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1512	chr3	121542897	121542898	rs2331964	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q13.33	IQCB1	rs2331964-C	NR	5E-20		1.0948	NR	Affymetrix, Illumina [8278136] (imputed)	N
1512	chr3	121543576	121543577	rs1920296	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and triglyceride levels (pleiotropy)	215,725 individuals	NA	3q13.33	IQCB1	rs1920296-?	NR	7E-8			[0.8523-0.9336]	NR [2487152]	N
1512	chr3	121543576	121543577	rs1920296	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q13.33	IQCB1	rs1920296-C	0.64	7E-22		1.12		Illumina [161311]	N
1512	chr3	121569487	121569488	rs17742642	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs17742642-T	NR	4E-32		0.0682	[0.057-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1512	chr3	121608432	121608433	rs57791671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q13.33		rs57791671-?	NR	6E-11				NR [~ 8900000] (imputed)	N
1512	chr3	121618983	121618984	rs9815756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q13.33	SLC15A2	rs9815756-T	0.477075	2E-9		0.013544774	[0.0091-0.018] unit increase	Affymetrix [93095623] (imputed)	N
1512	chr3	121618983	121618984	rs9815756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q13.33	SLC15A2	rs9815756-T	0.477066	3E-10		0.014147657	[0.0098-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1512	chr3	121621381	121621382	rs2877569	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q13.33	SLC15A2	rs2877569-A	0.5378	2E-13	(EA)	0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1512	chr3	121624740	121624741	rs9713657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q13.33		rs9713657-C	NR	3E-9		0.0138	[0.0093-0.0183] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1512	chr3	121626633	121626634	rs7635449	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q13.33	SLC15A2	rs7635449-T	0.496	1E-13		0.0025	[0.0019-0.0031] unit increase	Affymetrix [NR] (imputed)	N
1512	chr3	121628658	121628659	rs35943712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q13.33	SLC15A2	rs35943712-A	0.476745	2E-13		0.016347924	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1512	chr3	121628658	121628659	rs35943712	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q13.33	SLC15A2	rs35943712-A	0.476739	1E-13		0.016502265	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1512	chr3	121628839	121628839	rs36045594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q13.33	NR	rs36045594-I	0.476781	1E-11		0.013696	[0.0097-0.0177] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1512	chr3	121632506	121632507	rs866929	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q13.33	NR	rs866929-A	0.472002	9E-20		0.016739	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1513	chr3	121634886	121634887	rs1357531	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q13.33	NR	rs1357531-A	0.472019	3E-20		0.016948	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1513	chr3	121635817	121635818	rs2332050	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	3q13.33	SLC15A2	rs2332050-?	NR	2E-8		0.02466	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1513	chr3	121637802	121637803	rs2689282	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q13.33	NR	rs2689282-C	0.5203	5E-12		1.0383137	[1.03-1.05]	Affymetrix [15688218] (imputed)	N
1513	chr3	121640317	121640318	rs9816071	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q13.33	NR	rs9816071-T	0.5205	1E-13		1.0450413	[1.03-1.06]	Affymetrix [15688218] (imputed)	N
1513	chr3	121641329	121641329	rs34354261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q13.33		rs34354261-TA	NR	2E-9		0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1513	chr3	121641692	121641693	rs2293616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q13.33		rs2293616-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1513	chr3	121643803	121643804	rs2257212	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q13.33	SLC15A2	rs2257212-T		1E-12		0.015	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1513	chr3	121644028	121644029	rs2250065	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q13.33	SLC15A2	rs2250065-G	0.4401	4E-14		7.57	NR z score increase	Illumina [26237160] (imputed)	N
1513	chr3	121644029	121644030	rs2250067	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q13.33	SLC15A2	rs2250067-T	0.539	2E-10		0.205	[0.009-0.401] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1513	chr3	121652140	121652141	rs75557865	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q13.33	SLC15A2	rs75557865-G	0.57	2E-8		1.029	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
1513	chr3	121657592	121657593	rs9868185	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q13.33	SLC15A2	rs9868185-A	0.5016	5E-25		0.0026	[0.002-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1513	chr3	121657592	121657593	rs9868185	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q13.33	SLC15A2	rs9868185-A	0.5417	2E-21		0.0027	[0.0021-0.0033] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1513	chr3	121660663	121660664	rs4285028	26920376	Wang Y	2016-02-26	Mult Scler	Genetic overlap between multiple sclerosis and several cardiovascular disease risk factors.	Multiple sclerosis and HDL levels (pleiotropy)	215,725 individuals	NA	3q13.33	SLC15A2	rs4285028-?	NR	4E-8			[1.0701-1.1419]	NR [2492237]	N
1513	chr3	121660663	121660664	rs4285028	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	SLC15A2, CD86	rs4285028-A	NR	2E-8	(Conditioned on rs9282641)	1.1	[1.09-1.12]	Illumina [465434]	N
1513	chr3	121678894	121678894	rs78643247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q13.33		rs78643247-CT	NR	2E-17		0.0154	[0.012-0.019] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1513	chr3	121686717	121686718	rs73181877	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs73181877-G	NR	3E-11		0.0456	[0.032-0.059] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121710085	121710086	rs11718322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs11718322-A	0.516812	9E-20				Affymetrix, Illumina [24653286] (imputed)	N
1513	chr3	121710085	121710086	rs11718322	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q13.33	NR	rs11718322-A	0.515114	1E-18				Affymetrix, Illumina [24558453] (imputed)	N
1513	chr3	121712050	121712051	rs2877561	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	3q13.33	ILDR1	rs2877561-A	26.88	3E-25	(recessive)	1.14	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1513	chr3	121712050	121712051	rs2877561	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	3q13.33	ILDR1	rs2877561-A	0.288	1E-9	(EA)	0.0986	[0.067-0.130] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1513	chr3	121712979	121712980	rs3915060	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	3q13.33		rs3915060-?	NR	6E-9		5.8213034	z score decrease	Affymetrix [NR] (imputed)	N
1513	chr3	121714390	121714391	rs2332036	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q13.33		rs2332036-T	NR	3E-28		0.0219	[0.018-0.026] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1513	chr3	121714390	121714391	rs2332036	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q13.33	ILDR1	rs2332036-T	0.5368	1E-12		0.0053	[0.0039-0.0067] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1513	chr3	121714683	121714684	rs9816720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q13.33		rs9816720-A	NR	4E-25		0.0174	[0.014-0.021] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1513	chr3	121714683	121714684	rs9816720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	3q13.33		rs9816720-A	0.749865	7E-9		0.0191609	[0.013-0.026] unit increase	Illumina [13478778] (imputed)	N
1513	chr3	121714683	121714684	rs9816720	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	3q13.33	ILDR1	rs9816720-?	NR	3E-8		0.02324	[0.015-0.031] unit increase novel	Illumina [6108953] (imputed)	N
1513	chr3	121715431	121715432	rs2332035	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment (high frequency)	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	3q13.33	NR	rs2332035-T	0.29	2E-8	(EA)	0.078	[0.051-0.105] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1513	chr3	121715431	121715432	rs2332035	31645637	Nagtegaal AP	2019-10-23	Sci Rep	Genome-wide association meta-analysis identifies five novel loci for age-related hearing impairment.	Age-related hearing impairment	9,675 European ancestry individuals	3,319 European ancestry individuals, 6,909 Hispanic individuals, 735 African American individuals	3q13.33	NR	rs2332035-T	0.29	2E-6	(EA)	0.065	[0.038-0.092] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1513	chr3	121716170	121716171	rs1806656	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q13.33	ILDR1	rs1806656-?	NR	1E-10		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1513	chr3	121716170	121716171	rs1806656	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q13.33	ILDR1	rs1806656-C	NR	7E-9		1.043	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1513	chr3	121718452	121718453	rs10934569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q13.33		rs10934569-A	NR	2E-9		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1513	chr3	121718452	121718453	rs10934569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q13.33	NR	rs10934569-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1513	chr3	121729898	121729899	rs11929195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q13.33	NR	rs11929195-G	NR	6E-13		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121729898	121729899	rs11929195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q13.33	NR	rs11929195-G	NR	2E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121729898	121729899	rs11929195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q13.33	NR	rs11929195-G	NR	1E-11		0.0169	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
1513	chr3	121729898	121729899	rs11929195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3q13.33	NR	rs11929195-G	NR	3E-13		0.0182	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121729898	121729899	rs11929195	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q13.33	NR	rs11929195-G	NR	5E-11		0.0164	[0.012-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121733999	121734000	rs112433403	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q13.33		rs112433403-A	NR	1E-8		0.0282	[0.019-0.038] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1513	chr3	121738202	121738203	rs111793536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q13.33		rs111793536-A	NR	4E-11		0.1245	[0.087-0.162] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1513	chr3	121738202	121738203	rs111793536	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q13.33	ILDR1	rs111793536-A	0.0626354	4E-11		0.12447326	[0.087-0.161] unit increase	Affymetrix [7288503] (imputed)	N
1513	chr3	121743158	121743159	rs113229608	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q13.33		rs113229608-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1513	chr3	121747644	121747645	rs7633003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q13.33	NR	rs7633003-G	NR	2E-10		0.0201	[0.014-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
1513	chr3	121747644	121747645	rs7633003	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs7633003-G	NR	3E-29		0.0355	[0.029-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1514	chr3	121769521	121769522	rs2681424	27386562	Andlauer TF	2016-06-17	Sci Adv	Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation.	Multiple sclerosis	4,888 German ancestry cases, 10,395 German ancestry controls	2,903 Sardinian ancestry cases, 3,323 Sardinian ancestry controls	3q13.33	CD86	rs2681424-?		1E-9		1.1627907		Illumina [at least 8143088] (imputed)	N
1514	chr3	121769521	121769522	rs2681424	22190364	Patsopoulos NA	2011-12-01	Ann Neurol	Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci.	Multiple sclerosis	5,545 European ancestry cases, 12,153 European ancestry controls	NA	3q13.33	ILDR1, CD86	rs2681424-T	0.40	2E-7		1.16	[NR]	Affymetrix, Illumina [2529394]	N
1514	chr3	121770538	121770539	rs2255214	26819262	Zhou Y	2016-01-27	Mult Scler	Genetic loci for Epstein-Barr virus nuclear antigen-1 are associated with risk of multiple sclerosis.	Epstein Barr virus nuclear antigen 1 IgG levels or multiple sclerosis	3,599 individuals, 1,956 Mexican American individuals, 5,545 European ancestry multiple sclerosis cases, 12,153 European ancestry non-multiple sclerosis controls		3q13.33	ILDR1	rs2255214-T	NR	5E-8				Illumina [up to 2529394] (imputed)	N
1514	chr3	121770538	121770539	rs2255214	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q13.33	CD86	rs2255214-C	0.52	1E-24		1.13		Illumina [161311]	N
1514	chr3	121781688	121781689	rs2715275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q13.33	CD86	rs2715275-G	0.201986	7E-15		0.021414898	[0.016-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1514	chr3	121781688	121781689	rs2715275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q13.33	CD86	rs2715275-G	0.202007	4E-13		0.019965438	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1514	chr3	121781722	121781723	rs2715274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q13.33		rs2715274-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1514	chr3	121788696	121788697	rs73184008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs73184008-T	NR	4E-9		0.0561	[0.037-0.075] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr3	121793186	121793187	rs4308217	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	CD86	rs4308217-C	NR	6E-8	(Conditioned on rs4285028, rs9282641)	1.1	[1.08-1.11]	Illumina [465434]	N
1514	chr3	121796767	121796768	rs9282641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q13.33	NR	rs9282641-A	NR	6E-11		0.0292	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1514	chr3	121796767	121796768	rs9282641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs9282641-A	NR	3E-13		0.0325	[0.024-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr3	121796767	121796768	rs9282641	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3q13.33	CD86	rs9282641-A	NR	2E-6	(GO:0003682|MF|02|chromatin binding)	4.7661104	Z-score increase	Illumina [8100000] (imputed)	N
1514	chr3	121796767	121796768	rs9282641	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q13.33	CD86	rs9282641-G	NR	1E-11		1.21	[1.18-1.24]	Illumina [465434]	N
1514	chr3	121800486	121800487	rs9831894	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	3q13.33	CD86	rs9831894-C		2E-7		1.26	[NR]	Illumina [up to 9464381] (imputed)	N
1514	chr3	121802293	121802294	rs75032946	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs75032946-G	NR	2E-11		0.0511	[0.036-0.066] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr3	121817612	121817613	rs2681416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q13.33		rs2681416-A	NR	4E-8		0.0133	[0.0086-0.018] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1514	chr3	121817612	121817613	rs2681416	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	3q13.33	CD86	rs2681416-A	0.311	2E-7		1.16	[1.09-1.22]	Illumina [up to 21554489]	N
1514	chr3	121817612	121817613	rs2681416	25261932	Cerhan JR	2014-09-28	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.	Diffuse large B cell lymphoma	3,857 European ancestry cases, 7,666 European ancestry controls	1,359 European ancestry cases, 4,557 European ancestry controls	3q13.33	CD86	rs2681416-A	0.311	8E-8		1.16	[1.10-1.23]	Illumina [8363971] (imputed)	N
1514	chr3	121820905	121820906	rs113267846	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q13.33	NR	rs113267846-T	0.060124	2E-10		0.025288	[0.017-0.033] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1514	chr3	121825196	121825197	rs2681417	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3q13.33	CD86	rs2681417-G	0.076	3E-8		1.1	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
1514	chr3	121827723	121827724	rs2715259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q13.33	NR	rs2715259-T	NR	7E-10		0.0294	[0.02-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1514	chr3	121827723	121827724	rs2715259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs2715259-T	NR	1E-15		0.0382	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr3	121836850	121836851	rs200746861	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs200746861-T	NR	4E-13		0.0827	[0.06-0.105] unit decrease	Affymetrix [9000000] (imputed)	N
1514	chr3	121839199	121839200	rs113741816	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs113741816-C	NR	9E-11		0.0501	[0.035-0.065] unit increase	Affymetrix [9000000] (imputed)	N
1514	chr3	121845912	121845913	rs116140498	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q13.33	NR	rs116140498-C	NR	2E-19		0.0511	[0.04-0.062] unit increase	Affymetrix [9000000] (imputed)	N
1514	chr3	121872824	121872825	rs6438700	19838195	Gateva V	2009-11-01	Nat Genet	A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.	Systemic lupus erythematosus	1,310 European ancestry cases, 7,859 European ancestry controls	1,963 European ancestry cases, 4,329 European ancestry controls	3q13.33	CD86	rs6438700-C	0.82	6E-6		1.18	[1.09-1.27]	Illumina [~ 2100000] (imputed)	N
1514	chr3	121889204	121889205	rs7630625	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q13.33	NR	rs7630625-G	0.616514	1E-10		0.012692	[0.0088-0.0165] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1515	chr3	121933951	121933953	rs10602692	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Urolithiasis	6,223 European ancestry cases, 482,123 European ancestry controls, 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls	NA	3q21.1		rs10602692-C	NR	1E-8		0.0684	[0.045-0.092] unit decrease	Affymetrix, Illumina [25845211] (imputed)	N
1515	chr3	121940660	121940661	rs80009321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs80009321-A	NR	2E-15		0.0639	[0.048-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121945837	121945838	rs11918240	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	3q21.1	NR	rs11918240-?	NR	2E-8	(conditional on round 3)	0.030754915	[0.02-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
1515	chr3	121946098	121946099	rs7627468	26272126	Oddsson A	2015-08-14	Nat Commun	Common and rare variants associated with kidney stones and biochemical traits.	Kidney stones	5,149 European ancestry cases, 279,870 European ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	3q21.1	CASR	rs7627468-A	0.268	2E-8		1.16	[NR]	Illumina [28300000] (imputed)	N
1515	chr3	121956952	121956953	rs2134223	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	3q21.1	NR	rs2134223-G	0.5286	3E-9		0.0517	[0.035-0.069] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
1515	chr3	121956952	121956953	rs2134223	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3q21.1	CASR, CD86	rs2134223-A	0.47	5E-9		1.05	1.03-1.07	Illumina [12557761] (imputed)	N
1515	chr3	121961460	121961461	rs13059382	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q21.1	NR	rs13059382-G	0.7216	1E-9		0.0356	[0.024-0.047] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1515	chr3	121962005	121962006	rs1818118	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Shannon index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3q21.1		rs1818118-T	NR	6E-6		4.5151696	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
1515	chr3	121963024	121963025	rs4678059	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q21.1		rs4678059-T	NR	1E-8		0.0429	[0.028-0.058] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1515	chr3	121963284	121963285	rs1979869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs1979869-C	NR	2E-27		0.0292	[0.024-0.034] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr3	121963284	121963285	rs1979869	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs1979869-C	NR	4E-70		0.0475	[0.042-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121965198	121965199	rs9859381	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q21.1	CASR	rs9859381-G	0.486	3E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [11800000] (imputed)	N
1515	chr3	121968878	121968879	rs35766781	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs35766781-A	NR	3E-9		0.071	[0.047-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121969711	121969712	rs7644981	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q21.1		rs7644981-A	0.469950511	2E-9		0.054701958	[0.037-0.073] unit increase	Illumina [13429769] (imputed)	N
1515	chr3	121969711	121969712	rs7644981	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3q21.1		rs7644981-A	0.469895631	5E-11		1.0554535	[1.038591941-1.072588834]	Illumina [8919992] (imputed)	N
1515	chr3	121973214	121973215	rs772906030	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Calcium levels	400,792 European ancestry individuals	NA	3q21.1		rs772906030-?	NR	4E-9		1.91037	[1.25-2.57] unit increase	NR [9800000] (imputed)	N
1515	chr3	121975324	121975327	rs141259107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q21.1		rs141259107-A	NR	7E-9		0.0578	[0.038-0.077] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1515	chr3	121977281	121977282	rs10934578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q21.1	CASR	rs10934578-T	0.317003	2E-15		0.018929373	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr3	121977281	121977282	rs10934578	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q21.1	CASR	rs10934578-T	0.317007	2E-15		0.01890252	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1515	chr3	121978072	121978073	rs3804590	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs3804590-T	0.353054	5E-16				Affymetrix, Illumina [19872809] (imputed)	N
1515	chr3	121980629	121980630	rs62269092	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs62269092-A	NR	1E-13		0.1475	[0.11-0.19] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121984019	121984020	rs35387386	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs35387386-T	NR	3E-21		0.0739	[0.059-0.089] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121992824	121992825	rs3804594	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3q21.1		rs3804594-T	0.552421824	5E-9		0.079734884	[0.053-0.106] unit increase	Illumina [13429513] (imputed)	N
1515	chr3	121993246	121993247	rs17251221	27897004	Verma SS	2016-01-01	Pac Symp Biocomput	IDENTIFYING GENETIC ASSOCIATIONS WITH VARIABILITY IN METABOLIC HEALTH AND BLOOD COUNT LABORATORY VALUES: DIVING INTO THE QUANTITATIVE TRAITS BY LEVERAGING LONGITUDINAL DATA FROM AN EHR.	Clinical laboratory measurements	17,347 European ancestry individuals	17,348 European ancestry individuals	3q21.1	CASR	rs17251221-?		2E-51	(calcium levels)			Illumina [629274]	N
1515	chr3	121993246	121993247	rs17251221	20705733	O'Seaghdha CM	2010-08-12	Hum Mol Genet	Common variants in the calcium-sensing receptor gene are associated with total serum calcium levels.	Calcium levels	20,611 European ancestry individuals	NA	3q21.1	CASR, WDR5B, C3orf28, CCDC58, CSTA, KPNA1	rs17251221-G	0.14	2E-22		0.06	[0.05-0.07] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1515	chr3	121994940	121994941	rs2279802	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3q21.1		rs2279802-A	NR	4E-8		0.0537	[0.035-0.073] unit increase	Affymetrix, Illumina [25837673] (imputed)	N
1515	chr3	121997995	121997996	rs114796420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs114796420-A	NR	2E-22		0.067	[0.053-0.081] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	121999058	121999059	rs2055427	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q21.1		rs2055427-A	0.554652516	5E-9		0.057719965	[0.038-0.077] unit decrease	Illumina [13134967] (imputed)	N
1515	chr3	122000726	122000728	rs10533065	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q21.1		rs10533065-C	NR	1E-9		0.0115	[0.0078-0.0152] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1515	chr3	122000981	122000982	rs115230894	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum phosphate levels	400,159 European ancestry individuals	NA	3q21.1		rs115230894-?	NR	4E-14		0.20181	[0.15-0.26] unit increase	NR [9800000] (imputed)	N
1515	chr3	122002013	122002014	rs143705939	31628463	Chai JF	2019-10-19	Hum Mol Genet	Associations with metabolites in Chinese suggest new metabolic roles in Alzheimer's and Parkinson's diseases.	Metabolite levels	1,954 Chinese ancestry individuals	NA	3q21.1	CASR	rs143705939-T	0.9944	2E-8	(SM d18:2/24:0)	0.7653	[0.49-1.04] unit increase	Illumina [~ 47000000] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	3q21.1	NR	rs1801725-T	NR	1E-7				Affymetrix [9800000]	N
1515	chr3	122003756	122003757	rs1801725	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q21.1	NR	rs1801725-T	NR	9E-86		0.071	[0.063-0.079] mg/dl increase	Affymetrix [NR] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs1801725-T	NR	5E-93		0.0758	[0.069-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs1801725-T	NR	3E-595		0.1927	[0.19-0.2] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	3q21.1	NR	rs1801725-?	NR	3E-24		0.2147	[0.17-0.26] unit increase novel	Illumina [6108953] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	25886283	Chang X	2015-04-17	PLoS One	Genome-wide association study of serum minerals levels in children of different ethnic background.	Calcium levels	5,261 European ancestry children, 3,817 African American ancestry children		3q21.1	CASR	rs1801725-T	NR	2E-6		0.0566	[NR] mg/dl increase	Illumina [up to 507950]	N
1515	chr3	122003756	122003757	rs1801725	24068962	O'Seaghdha CM	2013-09-19	PLoS Genet	Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.	Calcium levels	39,400 European ancestry individuals	Up to 21,679 European ancestry individuals	3q21.1	CASR	rs1801725-T	0.15	9E-86		0.071	[0.063-0.079] unit increase	Affymetrix, Illumina [2500000] (imputed)	N
1515	chr3	122003756	122003757	rs1801725	20661308	Kapur K	2010-07-22	PLoS Genet	Genome-wide meta-analysis for serum calcium identifies significantly associated SNPs near the calcium-sensing receptor (CASR) gene.	Calcium levels	8,918 European ancestry individuals, 3,947 Indian Asian ancestry individuals	4,126 European ancestry individuals	3q21.1	CASR	rs1801725-T	0.1775	6E-37		0.0	[0.0031-0.0042] log(CASR, mmol/L) increase	Affymetrix, Illumina, Perlegen [2557252] (imputed)	N
1515	chr3	122003768	122003769	rs1042636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	3q21.1		rs1042636-G	0.555201	4E-39		0.0621497	[0.053-0.071] unit decrease	Illumina [13468899] (imputed)	N
1515	chr3	122003768	122003769	rs1042636	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	3q21.1	CASR	rs1042636-?		2E-10		1.098901	[1.06-1.12]	Illumina [87827]	N
1515	chr3	122009174	122009175	rs4678176	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	3q21.1	CASR, CSTA	rs4678176-?	NR	1E-38		0.06908	[0.059-0.079] unit decrease novel	Illumina [6108953] (imputed)	N
1515	chr3	122009507	122009508	rs9821958	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	3q21.1	CASR, HNRNPA1P23	rs9821958-G	0.135	3E-6		0.0675	[0.039-0.096] unit increase	NR [4841651] (imputed)	N
1515	chr3	122013353	122013354	rs10934582	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.1		rs10934582-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1515	chr3	122013464	122013465	rs73186030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q21.1		rs73186030-T	NR	2E-612		0.1927	[0.19-0.2] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1515	chr3	122013464	122013465	rs73186030	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q21.1	NR	rs73186030-C	0.869623	3E-616		0.0176658	[0.017-0.018] unit decrease	Affymetrix [NR] (imputed)	N
1515	chr3	122013464	122013465	rs73186030	27927781	Robinson-Cohen C	2016-12-07	J Am Soc Nephrol	Genetic Variants Associated with Circulating Parathyroid Hormone.	Serum parathyroid hormone levels	up to 22,653 European ancestry individuals.	6,502 European ancestry individuals.	3q21.1	CASR	rs73186030-T	0.14	1E-9		0.03	[0.022-0.038] unit increase	Affymetrix, Illumina, Perlegen [8559187] (imputed)	N
1515	chr3	122014565	122014566	rs13083990	23247143	Yu B	2012-12-16	Circ Cardiovasc Genet	Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.	Cardiac Troponin-T levels	9,491 European ancestry individuals, up to 2,053 African American individuals	NA	3q21.1	CASR	rs13083990-T	NR	4E-6	(Dichotomous variable)	2.66	[1.76-4.02]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1515	chr3	122014681	122014682	rs13061521	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q21.1	NR	rs13061521-T	0.316264	3E-17		0.01798	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1515	chr3	122026088	122026089	rs13068893	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	3q21.1	CASR	rs13068893-G	0.44	4E-8		0.00208	[0.0013-0.0028] unit decrease	Affymetrix [1219546] (imputed)	N
1515	chr3	122026470	122026471	rs884096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs884096-G	NR	3E-12		0.0315	[0.023-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1515	chr3	122026470	122026471	rs884096	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs884096-G	NR	2E-82		0.0866	[0.078-0.095] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr3	122031286	122031287	rs116027795	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs116027795-T	NR	5E-39		0.0781	[0.066-0.09] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr3	122039029	122039030	rs4678181	25972035	Vinayagamoorthy N	2015-05-14	J Hum Genet	Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.	Calcium levels	4,558 Korean ancestry individuals	4,093 Korean ancestry individuals	3q21.1	CSTA	rs4678181-A	0.44	1E-7		0.00202	[0.0013-0.0028] unit decrease	Affymetrix [1219546] (imputed)	N
1516	chr3	122048643	122048644	rs17265703	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	3q21.1	NR	rs17265703-G	0.1521	2E-13		1.13	[1.09-1.17]	Affymetrix, Illumina [7072771] (imputed)	N
1516	chr3	122048643	122048644	rs17265703	20558539	Kestenbaum B	2010-06-17	J Am Soc Nephrol	Common genetic variants associate with serum phosphorus concentration.	Phosphorus levels	16,264 European ancestry individuals	5,444 individuals	3q21.1	CASR, CCDC58	rs17265703-G	0.15	4E-9		0.04	[NR] mg/dl decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1516	chr3	122064368	122064369	rs12054451	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3q21.1	CSTA	rs12054451-T	0.740504	2E-11		0.015958	[0.011-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1516	chr3	122079429	122079430	rs2332179	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.1		rs2332179-A	0.861	3E-9		0.0121	[0.0082-0.016] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1516	chr3	122084528	122084529	rs66508963	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.1		rs66508963-A	0.8612	2E-9	(conditional-joint)	0.0122	[0.0083-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1516	chr3	122086456	122086457	rs9818537	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q21.1		rs9818537-T	NR	2E-13		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1516	chr3	122090101	122090102	rs11920570	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3q21.1	CCDC58	rs11920570-A	0.26	5E-13		0.2676	[0.19-0.34] unit increase	Affymetrix [19941912] (imputed)	N
1516	chr3	122093569	122093570	rs9856011	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.1	CCDC58	rs9856011-A	0.156229	8E-14		0.023286413	[0.017-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1516	chr3	122100348	122100349	rs28679619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q21.1		rs28679619-A	NR	2E-14		0.0189	[0.014-0.024] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1516	chr3	122100446	122100447	rs12152463	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q21.1		rs12152463-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1516	chr3	122102709	122102710	rs3828361	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs3828361-C	NR	2E-17		0.0308	[0.024-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1516	chr3	122105714	122105715	rs67931976	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.1	Intergenic	rs67931976-A	0.8318	2E-9	(MTAG)	0.0132	[0.0089-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1516	chr3	122110148	122110149	rs9882772	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.1	FAM162A	rs9882772-T		2E-8		0.133	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1516	chr3	122111560	122111561	rs2002594	28990359	Polimanti R	2017-10-09	Am J Med Genet B Neuropsychiatr Genet	Ancestry-specific and sex-specific risk alleles identified in a genome-wide gene-by-alcohol dependence interaction study of risky sexual behaviors.	Risky sexual behaviors (alcohol dependence interaction)	454 African American women cases, 1,087 African American men cases, 444 European ancestry women cases, 992 European ancestry men cases, 231 African American women controls, 401 African American men controls, 142 European ancestry women controls, 173 European ancestry men controls		3q21.1	FAM162A	rs2002594-?	0.399	5E-8	(men)			Illumina [at least 550000] (imputed)	N
1516	chr3	122117662	122117663	rs9834975	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3q21.1	chr3mb122	rs9834975-T	0.441389248	1E-8		0.1548	[0.1-0.21] unit increase	Affymetrix [~ 9800000] (imputed)	N
1516	chr3	122128393	122128394	rs1127343	31622379	Best LG	2019-10-17	PLoS One	Genetic analysis of hsCRP in American Indians: The Strong Heart Family Study.	C-reactive protein levels	1,892 American Indian ancestry individuals	NA	3q21.1	C3orf28	rs1127343-A	0.147	6E-6		4.54	unit increase (z-score)	Illumina [120972]	N
1516	chr3	122137195	122137196	rs7647874	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs7647874-G	0.153882	1E-14				Affymetrix, Illumina [24246363] (imputed)	N
1516	chr3	122139803	122139804	rs9820556	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q21.1	NR	rs9820556-T	0.156715	1E-13		0.019028	[0.014-0.024] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1516	chr3	122140615	122140616	rs55853677	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.1	RP11-299J3.8	rs55853677-A	0.158727	6E-14		0.0201213	[0.015-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1516	chr3	122142663	122142664	rs16833132	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs16833132-A	NR	8E-18		0.0369	[0.028-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1516	chr3	122145323	122145324	rs3762637	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	3q21.1	KPNA1	rs3762637-T	0.1438	3E-8	(Trans-ethnic initial)	0.0234	[0.013-0.033] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1517	chr3	122159839	122159840	rs9833415	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q21.1		rs9833415-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1517	chr3	122177259	122177260	rs116555124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs116555124-T	NR	4E-10		0.0423	[0.029-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1517	chr3	122177259	122177260	rs116555124	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs116555124-T	NR	4E-108		0.1492	[0.14-0.16] unit increase	Affymetrix [9000000] (imputed)	N
1517	chr3	122196891	122196892	rs55961674	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3q21.1	KPNA1	rs55961674-T	0.1722	1E-11		0.0861	[0.061-0.111] unit increase	NR [7784415] (imputed)	N
1517	chr3	122197007	122197007	rs566764177	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q21.1	KPNA1	rs566764177-CAAAAA	0.148291	4E-11		0.021120617	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1517	chr3	122198020	122198021	rs71329269	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs71329269-A	NR	8E-19		0.0743	[0.058-0.091] unit increase	Affymetrix [9000000] (imputed)	N
1517	chr3	122199286	122199286	rs570074023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q21.1	NR	rs570074023-I	0.151754	7E-11		0.018559	[0.013-0.024] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1517	chr3	122209457	122209458	rs114433626	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs114433626-A	NR	8E-15		0.0543	[0.041-0.068] unit increase	Affymetrix [9000000] (imputed)	N
1517	chr3	122214044	122214045	rs11720985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.1	Intergenic	rs11720985-T	0.3036	2E-9	(MTAG)	0.0107	[0.0072-0.0142] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1517	chr3	122214044	122214045	rs11720985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.1		rs11720985-T	0.306	3E-8		0.0085	[0.0056-0.0114] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1517	chr3	122214044	122214045	rs11720985	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.1	Intergenic	rs11720985-T	0.306	2E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1517	chr3	122226287	122226287	rs11406672	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q21.1	KPNA1	rs11406672-?	0.6791	1E-8		0.0166	[0.011-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1517	chr3	122233646	122233647	rs28384492	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs28384492-T	NR	3E-28		0.045	[0.037-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1517	chr3	122233646	122233647	rs28384492	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs28384492-T	NR	4E-200		0.1232	[0.12-0.13] unit increase	Affymetrix [9000000] (imputed)	N
1517	chr3	122247074	122247075	rs114569472	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs114569472-C	NR	2E-18		0.059	[0.046-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1517	chr3	122252379	122252380	rs73192103	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q21.1		rs73192103-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1517	chr3	122258055	122258056	rs9825383	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q21.1	PARP9	rs9825383-A	0.6077	4E-8		0.0152	[0.0097-0.0207] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1517	chr3	122265738	122265739	rs7629285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs7629285-T	0.189918	2E-11				Affymetrix, Illumina [20825802] (imputed)	N
1517	chr3	122268627	122268628	rs55740225	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3q21.1	PARP9	rs55740225-T		3E-7		0.0946	[0.058-0.131] unit decrease	Illumina [NR]	N
1517	chr3	122270445	122270446	rs77732258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q21.1	NR	rs77732258-T	NR	2E-14		0.0774	[0.058-0.097] unit decrease	Affymetrix [9000000] (imputed)	N
1517	chr3	122270445	122270446	rs77732258	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs77732258-T	NR	8E-55		0.1579	[0.14-0.18] unit increase	Affymetrix [9000000] (imputed)	N
1517	chr3	122275424	122275425	rs79059533	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs79059533-C	NR	9E-36		0.0751	[0.063-0.087] unit decrease	Affymetrix [9000000] (imputed)	N
1517	chr3	122282568	122282569	rs9841897	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3q21.1	PARP9	rs9841897-T	0.843505	1E-10		0.018534	[0.013-0.024] unit decrease	Affymetrix [NR] (imputed)	N
1517	chr3	122285218	122285219	rs68028452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q21.1		rs68028452-C	NR	1E-13		0.0155	[0.011-0.02] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1517	chr3	122285218	122285219	rs68028452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3q21.1		rs68028452-C	NR	1E-16		0.0188	[0.014-0.023] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
1517	chr3	122289843	122289844	rs34407651	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs34407651-T	NR	1E-10		0.0189	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1518	chr3	122290578	122290579	rs2036342	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs2036342-T	NR	4E-20		0.0251	[0.02-0.03] unit increase	Affymetrix [9000000] (imputed)	N
1518	chr3	122311522	122311523	rs79229354	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs79229354-T	NR	2E-10		0.0538	[0.037-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1518	chr3	122315677	122315678	rs9820905	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs9820905-G	NR	1E-14		0.0625	[0.047-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
1518	chr3	122329159	122329160	rs2173763	22472876	Sullivan PF	2012-04-03	Mol Psychiatry	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	3q21.1	PARP9, DTX3L, PARP15	rs2173763-?	NR	6E-6				Affymetrix, Illumina, Perlegen [~ 1200000] (imputed)	N
1518	chr3	122356450	122356451	rs78411303	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	3q21.1	PARP15	rs78411303-?	0.094	3E-6	(Age 20-60 years)	1.96	[1.47-2.56]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1518	chr3	122368346	122368347	rs2650951	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3q21.1	intergenic	rs2650951-A	0.05	1E-6		0.29	[0.17-0.41] unit decrease	Illumina [~ 318327]	N
1518	chr3	122380922	122380923	rs790116	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy (opposite direction w/ diuretic therapy)	394 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	3q21.1	EIF4BP8	rs790116-G	NR	2E-7	(AA)			Affymetrix [~ 2300000] (imputed)	N
1518	chr3	122384019	122384020	rs790110	25387708	Vaidyanathan U	2014-12-01	Psychophysiology	Heritability and molecular genetic basis of acoustic startle eye blink and affectively modulated startle response: a genome-wide association study.	Acoustic startle blink response	3,323 European ancestry twins and their parents	NA	3q21.1	intergenic	rs790110-?	NR	9E-8	(Aversive Difference Startle Scores)	0.182	[0.12-0.25] unit decrease	Illumina [527829]	N
1518	chr3	122388992	122388993	rs790123	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	3q21.1	EIF4BP8	rs790123-T	NR	6E-6	(AA)	1.07	[0.58-1.56] unit increase	Affymetrix [~ 2300000] (imputed)	N
1519	chr3	122526815	122526816	rs9847240	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q21.1		rs9847240-?	NR	3E-62				NR [~ 8900000] (imputed)	N
1519	chr3	122526815	122526816	rs9847240	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3q21.1	DIRC2	rs9847240-?	NR	3E-27		1.0926573	NR	Affymetrix [9154080] (imputed)	N
1520	chr3	122610628	122610629	rs7640146	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.1	NR	rs7640146-G	0.01568	1E-8	(PSMD14)	0.079	NR unit decrease	Illumina [1671387] (imputed)	N
1520	chr3	122617880	122617881	rs7647957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q21.1		rs7647957-G	NR	9E-10		0.0154	[0.011-0.02] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1520	chr3	122617880	122617881	rs7647957	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	3q21.1	LOC100129550, SEMA5B	rs7647957-?	NR	4E-8		0.02705	[0.017-0.037] unit increase	Illumina [6108953] (imputed)	N
1520	chr3	122625255	122625256	rs7631746	33597122	Verbitsky M	2021-02-17	J Am Soc Nephrol	Copy Number Variant Analysis and Genome-wide Association Study Identify Loci with Large Effect for Vesicoureteral Reflux.	Vesicoureteral reflux	1,395 European ancestry cases, 5,366 European ancestry controls	NA	3q21.1	NR	rs7631746-C	0.1954	8E-7	(recessive, male)	3.4934857	[2.12807113708084-5.73497849045639]	Affymetrix, Illumina [6131010] (imputed)	N
1520	chr3	122651530	122651531	rs62261734	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q21.1	NR	rs62261734-T	NR	5E-10		0.0326	[0.022-0.043] unit increase	Affymetrix [9000000] (imputed)	N
1520	chr3	122683206	122683207	rs12635724	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total grey matter volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q21.1	SEMA5B	rs12635724-?		9E-7				Illumina [4322238] (imputed)	N
1520	chr3	122683206	122683207	rs12635724	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q21.1	SEMA5B	rs12635724-?		1E-6				Illumina [4322238] (imputed)	N
1521	chr3	122697599	122697600	rs10934631	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q21.1	NR	rs10934631-C		2E-6		0.1151	[0.067-0.163] SD units increase	NR [10700000] (imputed)	N
1521	chr3	122713510	122713511	rs6786625	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Clostridiaceae)	1,068 Japanese ancestry individuals	NA	3q21.1	SEMA5B	rs6786625-A	0.06	3E-6		0.313	[0.18-0.44] unit decrease	Illumina [6380737] (imputed)	N
1521	chr3	122730909	122730910	rs9868873	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	3q21.1	SEMA5B	rs9868873-G	0.82	1E-7		1.19	[1.11-1.27]	Affymetrix [666141]	N
1521	chr3	122738306	122738307	rs7632505	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases, mortality and associated endophenotypes	9,618 European ancestry individuals	19,796 European ancestry individuals	3q21.1	NR	rs7632505-?	NR	7E-19				Affymetrix [NR]	N
1521	chr3	122738306	122738307	rs7632505	27790247	He L	2016-11-03	Front Genet	Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases.	Age-related diseases and mortality	9,618 European ancestry individuals	19,796 European ancestry individuals	3q21.1	NR	rs7632505-?	NR	8E-22				Affymetrix [NR]	N
1521	chr3	122795465	122795466	rs147868100	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	3q21.1	NR	rs147868100-?	NR	6E-7		0.263	[0.16-0.36] unit decrease	Illumina [at least 560000] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SYT11	5,365 Icelandic ancestry individuals	NA	3q21.1		rs3804749-C	0.3418	4E-18		0.172746	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MANF	5,363 Icelandic ancestry individuals	NA	3q21.1		rs3804749-C	0.3418	7E-48		0.286722	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q21.1		rs3804749-T	NR	5E-47		0.028	[0.024-0.032] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q21.1		rs3804749-C	0.408	2E-34				Affymetrix [10369434] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.1	PDIA5	rs3804749-T	0.590589	2E-15		0.018230937	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.1	PDIA5	rs3804749-T	0.590565	4E-79		0.043475833	[0.039-0.048] unit increase	Affymetrix [93095623] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs3804749-T	0.555427	2E-93				Affymetrix, Illumina [24588908] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q21.1	NR	rs3804749-T	0.588971	2E-85		0.036838	[0.033-0.041] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q21.1	PDIA5	rs3804749-T	0.5927	7E-11		0.02445101	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3q21.1	PDIA5	rs3804749-T	0.5927	5E-34		0.04485619	[0.038-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q21.1	PDIA5	rs3804749-T	0.5929	2E-28		0.0412622	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1522	chr3	122833002	122833003	rs3804749	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q21.1	PDIA5	rs3804749-T	0.5927	1E-32		0.04409945	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1522	chr3	122835231	122835232	rs2278668	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q21.1	PDIA5	rs2278668-C	0.593	4E-110	(Protein disulfide-isomerase A5, PDIA5.5593.11.3)	0.52	[0.48-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
1522	chr3	122835999	122836000	rs13314114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.1	PDIA5	rs13314114-C	0.590942	2E-72		0.040747236	[0.036-0.045] unit increase	Affymetrix [93095623] (imputed)	N
1522	chr3	122839875	122839876	rs3792366	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	3q21.1	PDIA5	rs3792366-G	NR	4E-9		2.153	[1.44-2.87] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1522	chr3	122842610	122842611	rs9823527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.1	PDIA5	rs9823527-A	0.590644	3E-52		0.0346053	[0.03-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
1522	chr3	122845670	122845671	rs920900	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q21.1	NR	rs920900-C	0.34234375	6E-729	(PDIA5, 5593_11_3)	1.1818856	[1.15-1.21] unit increase	Illumina [> 1000000] (imputed)	N
1522	chr3	122845670	122845671	rs920900	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q21.1	NR	rs920900-C	0.34234375	2E-10	(SYT11, 7089_42_3)	0.16232857	[0.11-0.21] unit increase	Illumina [> 1000000] (imputed)	N
1522	chr3	122845670	122845671	rs920900	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q21.1	NR	rs920900-C	0.34234375	1E-26	(MANF, 9223_11_3)	0.2759064	[0.23-0.33] unit increase	Illumina [> 1000000] (imputed)	N
1522	chr3	122854898	122854899	rs1530455	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	3q21.1	PDIA5	rs1530455-C		5E-10		0.108	[0.074-0.142] SD units decrease	NR [10700000] (imputed)	N
1522	chr3	122854898	122854899	rs1530455	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	3q21.1	NR	rs1530455-C		5E-6		0.0793	[0.045-0.113] SD units decrease	NR [10700000] (imputed)	N
1522	chr3	122854898	122854899	rs1530455	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Fibroblast growth factor basic levels	7,565 Finnish ancestry individuals	NA	3q21.1	NR	rs1530455-C		9E-6		0.0777	[0.043-0.112] SD units decrease	NR [10700000] (imputed)	N
1522	chr3	122864770	122864771	rs1976714	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		3q21.1	PDIA5	rs1976714-?	NR	8E-9		0.0064	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
1522	chr3	122864770	122864771	rs1976714	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	3q21.1	PDIA5	rs1976714-T	0.35	2E-8		0.0055	NR unit decrease	Affymetrix, Illumina [~ 10700000] (imputed)	N
1522	chr3	122865135	122865136	rs2673345	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure change trajectory	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3q21.1	NR	rs2673345-A	0.5696	6E-7		0.0404	[0.025-0.056] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1522	chr3	122872152	122872153	rs16834024	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		3q21.1	PDIA5	rs16834024-?	NR	1E-7		0.0173	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1522	chr3	122901333	122901334	rs73197522	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q21.1	NR	rs73197522-C	NR	2E-12		0.0436	[0.031-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1522	chr3	122911157	122911158	rs75651113	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ULBP2	5,351 Icelandic ancestry individuals	NA	3q21.1		rs75651113-C	0.0145	7E-12		0.127252	[0.091-0.164] unit increase	Illumina [7506463] (imputed)	N
1522	chr3	122934558	122934559	rs12491439	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q21.1	NR	rs12491439-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1523	chr3	122964427	122964428	rs11720939	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q21.1		rs11720939-T	NR	1E-14		0.0153	[0.011-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1523	chr3	123003297	123003298	rs13317079	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q21.1	ADCY5	rs13317079-A	0.042	2E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1523	chr3	123035462	123035463	rs9790301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q21.1	NR	rs9790301-C	NR	6E-12		0.0213	[0.015-0.027] unit increase	Affymetrix [9000000] (imputed)	N
1523	chr3	123049937	123049938	rs6806529	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q21.1	ADCY5	rs6806529-A	0.436378	7E-9		0.0111889	[0.0074-0.015] unit decrease	Affymetrix [NR] (imputed)	N
1523	chr3	123049937	123049938	rs6806529	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	3q21.1	ADCY5	rs6806529-A	0.4338	6E-11		0.1372	[0.096-0.178] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1523	chr3	123051018	123051019	rs34642857	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q21.1	ADCY5	rs34642857-T	0.749372	4E-9		0.013374	[0.0089-0.0178] unit increase	Affymetrix [NR] (imputed)	N
1523	chr3	123052017	123052018	rs4677883	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q21.1	ADCY5	rs4677883-A	NR	5E-9		0.021381	[0.014-0.029] unit increase	Affymetrix [321114] (imputed)	N
1523	chr3	123053409	123053410	rs9849919	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q21.1	NR	rs9849919-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1523	chr3	123054354	123054355	rs77147119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q21.1	NR	rs77147119-T	NR	8E-19		0.0403	[0.031-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1523	chr3	123054354	123054355	rs77147119	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q21.1	NR	rs77147119-T	NR	1E-13		0.0346	[0.025-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
1523	chr3	123054769	123054770	rs72964564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q21.1		rs72964564-C	NR	4E-22		0.1004	[0.08-0.121] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1523	chr3	123054769	123054770	rs72964564	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q21.1		rs72964564-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1523	chr3	123062656	123062657	rs9814758	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q21.1	ADCY5	rs9814758-T	0.6439	5E-9		0.00838747	[0.0056-0.0112] unit increase	Affymetrix [12370749]	N
1523	chr3	123065777	123065778	rs11708067	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	3q21.1		rs11708067-A	0.20840000000000003	2E-12		0.0565	[0.041-0.072] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	3q21.1		rs11708067-A	0.22419999999999995	9E-9		0.0702	[0.046-0.094] unit increase	Affymetrix, Illumina [29259056] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	3q21.1	ADCY5	rs11708067-G	0.23719	8E-6		0.811	[0.74 - 0.889]	Illumina [5397657] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q21.1		rs11708067-G	NR	3E-8		0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q21.1		rs11708067-G	NR	1E-85		0.0524	[0.047-0.058] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q21.1		rs11708067-G	NR	8E-70		0.0509	[0.045-0.057] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q21.1		rs11708067-G	NR	6E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7828	2E-22		0.0872	[0.069-0.105] unit increase	Affymetrix, Illumina [30098705] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7816	1E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [32635793] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	9,343 South Asian ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7793	1E-7		0.0695	[0.042-0.097] unit increase	Illumina, Perlegen [20274841] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7717	2E-43		0.0281	[0.024-0.032] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7379	1E-8		0.0315	[0.02-0.043] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	16,579 African American individuals	NA	3q21.1	ADCY5	rs11708067-A	0.846	5E-9		0.0518	[0.034-0.07] unit increase	Affymetrix, Illumina [27843817] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3q21.1	ADCY5	rs11708067-G	0.171	5E-12				Affymetrix, Illumina [2331072] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and fasting glucose (pairwise)	380,336 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3q21.1	ADCY5	rs11708067-G	0.171	4E-9				Affymetrix, Illumina [2331072] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and type 2 diabetes (pairwise)	200,863 European ancestry individuals, 24,401 East Asian, South Asian and African American ancestry individuals	NA	3q21.1	ADCY5	rs11708067-G	0.171	2E-14				Affymetrix, Illumina [2331072] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body fat percentage and fasting glucose (pairwise)	148,718 European ancestry individuals, 10,072 East Asian, South Asian and African American ancestry individuals	NA	3q21.1	ADCY5	rs11708067-G	0.171	1E-10				Affymetrix, Illumina [2331072] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	3q21.1	ADCY5	rs11708067-A	0.771257	5E-16		0.026993	[0.02-0.034] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	3q21.1	ADCY5	rs11708067-A	0.771257	2E-6		0.016853	[0.0099-0.0238] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.771257	5E-22		0.022815	[0.018-0.027] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	3q21.1	NR	rs11708067-G	0.151	2E-11		0.118	[0.083-0.153] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q21.1	NR	rs11708067-G	0.2286	2E-46		0.0782	[0.067-0.089] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q21.1	NR	rs11708067-G	0.2229	2E-57		0.0804	[0.071-0.09] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q21.1	NR	rs11708067-A	0.755205	2E-9		0.0146379	[0.0099-0.0194] unit decrease	NR [NR]	N
1523	chr3	123065777	123065778	rs11708067	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	3q21.1	NR	rs11708067-A	0.77	4E-25		0.045870624	[0.037-0.055] unit decrease	NR [1977400] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	3q21.1	NR	rs11708067-A	0.774	9E-20		0.063346945	[0.05-0.077] unit decrease	NR [1977400] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	3q21.1	NR	rs11708067-A	0.24	6E-24		0.038	[0.03-0.046] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q21.1	ADCY5	rs11708067-G	0.237762	2E-42		0.040866	[0.035-0.047] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	31021400	Masotti M	2019-04-25	Biometrics	Pleiotropy informed adaptive association test of multiple traits using GWAS summary data.	Glycemic traits (pleiotropy)	46,186 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-?	NR	3E-8				NR [NR]	N
1523	chr3	123065777	123065778	rs11708067	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q21.1	ADCY5	rs11708067-A	0.7723	5E-32		1.09	[1.08-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q21.1	ADCY5	rs11708067-G	0.238989658490694	6E-29		0.0965	[0.08-0.113] unit decrease	NR [5035015] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		3q21.1	ADCY5	rs11708067-A	NR	3E-6		1.09		Affymetrix, Illumina [1918233] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	3q21.1	ADCY5	rs11708067-G	NR	2E-12		0.01531062	[0.011-0.02] unit decrease	Illumina [242289]	N
1523	chr3	123065777	123065778	rs11708067	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Total cholesterol levels	up to 237,050 European ancestry individuals	NA	3q21.1	NR	rs11708067-G	0.22	6E-6		0.017	unit decrease	Illumina [242289]	N
1523	chr3	123065777	123065778	rs11708067	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	3q21.1	ADCY5	rs11708067-A	0.7542	1E-12		0.0132	[0.0095-0.0169] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q21.1	ADCY5	rs11708067-G	0.171	5E-20		0.095	[0.075-0.115] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q21.1	ADCY5	rs11708067-G	0.171	2E-17	(EA)	0.1044	[0.08-0.129] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	3q21.1	ADCY5	rs11708067-G	0.213381965316371	4E-16		0.030359665	[0.023-0.038] unit decrease	Illumina [197481]	N
1523	chr3	123065777	123065778	rs11708067	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q21.1	ADCY5	rs11708067-A	NR	4E-7	(men)	1.09	[1.06-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q21.1	ADCY5	rs11708067-A	NR	2E-10	(female)	1.13	[1.09-1.18]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	3q21.1	ADCY5	rs11708067-A	0.78	6E-8	(Lean)	1.25	[1.15-1.35]	NR [NR]	N
1523	chr3	123065777	123065778	rs11708067	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q21.1	ADCY5	rs11708067-A	0.7879	4E-10		2.0E-4	[-0.00142-0.00182] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q21.1	ADCY5	rs11708067-A	0.7884	7E-9		0.0223	[0.015-0.03] unit increase	Affymetrix, Illumina [~ 2400000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	3q21.1	ADCY5	rs11708067-A	0.78	3E-12		0.023	[0.015-0.031] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1523	chr3	123065777	123065778	rs11708067	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	3q21.1	ADCY5	rs11708067-A	0.78	7E-22		0.027	[0.021-0.033] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1523	chr3	123068358	123068359	rs4383453	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	3q21.1	ADCY5, SEC22A, HACD2	rs4383453-A	0.2	4E-8		0.808	[NR] unit decrease	Illumina [15635593] (imputed)	N
1523	chr3	123068743	123068744	rs11719201	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3q21.1	ADCY5	rs11719201-T	0.237	2E-18		0.0129	[0.01-0.0158] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1523	chr3	123068743	123068744	rs11719201	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q21.1	ADCY5	rs11719201-C	0.752678	1E-10		0.0138095	[0.0096-0.018] unit increase	NR [13737936] (imputed)	N
1523	chr3	123068743	123068744	rs11719201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q21.1		rs11719201-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1523	chr3	123068743	123068744	rs11719201	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q21.1		rs11719201-?	NR	5E-11		0.0148717	[0.01-0.02] unit increase	Affymetrix [20259828] (imputed)	N
1523	chr3	123068743	123068744	rs11719201	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	3q21.1	ADCY5	rs11719201-T	0.23	6E-27		0.0459	[0.037-0.054] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1523	chr3	123068819	123068820	rs4474982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q21.1	ADCY5	rs4474982-A	0.177059	5E-17		0.024461832	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1523	chr3	123068819	123068820	rs4474982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q21.1	ADCY5	rs4474982-A	0.177048	5E-12		0.02016551	[0.014-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	3q21.1		rs11720108-C	0.754514	1E-19		0.0432911	[0.034-0.053] unit increase	NR [11722792] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q21.1		rs11720108-T	NR	3E-12		0.0942	[0.068-0.121] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q21.1	NR	rs11720108-T	0.24873599999999996	5E-11		0.00813794	[0.0053-0.0109] unit increase	Affymetrix [16585854] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q21.1	NR	rs11720108-T	0.24873599999999996	7E-7		0.0070345	[0.0038-0.0103] unit increase	Affymetrix [16585866] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	3q21.1	ADCY5	rs11720108-T	0.247134	3E-12		0.09397593	[0.068-0.12] unit decrease	Affymetrix [7288503] (imputed)	N
1523	chr3	123069057	123069058	rs11720108	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3q21.1		rs11720108-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1523	chr3	123070425	123070426	rs7614016	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q21.1	NR	rs7614016-G	NR	2E-8		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1523	chr3	123070425	123070426	rs7614016	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q21.1		rs7614016-G	NR	2E-6		0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1523	chr3	123070425	123070426	rs7614016	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q21.1	NR	rs7614016-G	NR	1E-9		0.021	unit increase	Affymetrix [at least 7091467] (imputed)	N
1524	chr3	123077041	123077042	rs4093840	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3q21.1	ADCY5	rs4093840-A	0.47	4E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.1	NR	rs2062432-G	0.48	5E-9			[NR]	Affymetrix [9886854] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.1	NR	rs2062432-G	0.48	8E-9		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.1	NR	rs2062432-G	0.48	7E-10			[NR]	Affymetrix [9886854] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	3q21.1	NR	rs2062432-G	0.48	7E-9		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	3q21.1	NR	rs2062432-G	0.48	6E-6		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
1524	chr3	123078078	123078079	rs2062432	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 1)	188,577 European ancestry individuals	NA	3q21.1	ADCY5	rs2062432-?	NR	4E-8				NR [1800000]	N
1524	chr3	123082397	123082398	rs11717195	28254843	Qi Q	2017-03-02	Diabetes	Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Type 2 diabetes	2,499 Hispanic/Latino ancestry cases, 5,247 Hispanic/Latino ancestry controls		3q21.1	ADCY5	rs11717195-T	0.75	5E-6		1.24	[1.13-1.36]	Illumina [NR] (imputed)	N
1524	chr3	123082397	123082398	rs11717195	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3q21.1	ADCY5	rs11717195-T	0.78	2E-8		1.09	[1.05-1.14]	Affymetrix, Illumina [2500000] (imputed)	N
1524	chr3	123082397	123082398	rs11717195	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q21.1	ADCY5	rs11717195-T	0.77150989868268	6E-14		1.11	[1.08-1.14]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1524	chr3	123084540	123084541	rs10934646	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q21.1		rs10934646-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1524	chr3	123089833	123089834	rs12330631	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q21.1		rs12330631-C	0.63	1E-13				NR [NR] (imputed)	N
1524	chr3	123089833	123089834	rs12330631	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q21.1		rs12330631-C	0.63	1E-15		0.013	% increase	NR [NR] (imputed)	N
1524	chr3	123089833	123089834	rs12330631	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q21.1		rs12330631-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1524	chr3	123091034	123091035	rs62263809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.1	ADCY5	rs62263809-T	0.216646	2E-16		0.022577612	[0.017-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1524	chr3	123093529	123093530	rs2124500	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q21.1	ADCY5	rs2124500-?		5E-8				Affymetrix, Illumina [NR] (imputed)	N
1524	chr3	123093540	123093541	rs2124499	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q21.1	ADCY5	rs2124499-G	0.625	6E-6		0.014	[0.0081-0.0203] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1524	chr3	123093540	123093541	rs2124499	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q21.1	ADCY5	rs2124499-G	0.621	8E-6	(EA)	0.014	[0.0081-0.0207] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1524	chr3	123093886	123093887	rs6794202	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3q21.1	NR	rs6794202-?	NR	1E-5		0.101051	[0.056-0.146] unit decrease	NR [13958389] (imputed)	N
1524	chr3	123094450	123094451	rs2877716	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q21.1	ADCY5	rs2877716-T	0.2329	1E-7		2.0E-4	[-0.00132-0.00172] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1524	chr3	123094450	123094451	rs2877716	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q21.1	ADCY5	rs2877716-T	0.232	4E-6		0.0171	[0.0098-0.0244] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1524	chr3	123094450	123094451	rs2877716	20081857	Saxena R	2010-01-17	Nat Genet	Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge.	Two-hour glucose challenge	15,234 individuals	up to 30,620 European ancestry individuals	3q21.1	ADCY5	rs2877716-C	NR	7E-16		0.09	[0.07-0.11] mmol/L increase	Affymetrix, Illumina [NR]	N
1524	chr3	123096055	123096056	rs113443135	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q21.1	NR	rs113443135-T	NR	1E-9		0.0415	[0.028-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1524	chr3	123096819	123096820	rs9883204	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	3q21.1	ADCY5	rs9883204-C	0.76	6E-20		0.059	[0.047-0.071] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1524	chr3	123096819	123096820	rs9883204	20372150	Freathy RM	2010-04-06	Nat Genet	Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.	Birth weight	10,623 European ancestry individuals	27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals	3q21.1	ADCY5	rs9883204-C		7E-15		0.06	[0.047-0.079] s.d. decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1524	chr3	123097705	123097706	rs12629585	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q21.1		rs12629585-A	NR	5E-11		0.0115	[0.0082-0.0148] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1524	chr3	123098241	123098242	rs56276445	31358989	Gelernter J	2019-07-29	Nat Neurosci	Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans.	Post-traumatic stress disorder (re-experiencing symptoms)	146,660 European ancestry individuals, 19,983 African American individuals	117,900 European ancestry individuals	3q21.1	NR	rs56276445-?	NR	6E-6	(AA)	0.282313	[NR] unit decrease	Affymetrix [49134253] (imputed)	N
1524	chr3	123100605	123100606	rs3845913	33955455	Beck JJ	2021-05-06	Hum Mol Genet	Genetic Meta-Analysis of Twin Birth Weight Shows High Genetic Correlation with Singleton Birth Weight.	Birth weight	42,212 European ancestry individuals	NA	3q21.1	ADCY5	rs3845913-?	NR	3E-7				Affymetrix, Illumina [7692335] (imputed)	N
1524	chr3	123105118	123105119	rs62262391	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3q21.1		rs62262391-C	0.775	1E-10				Affymetrix [10369434] (imputed)	N
1524	chr3	123105118	123105119	rs62262391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.1	ADCY5	rs62262391-T	0.22476	7E-11		0.017263675	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105118	123105119	rs62262391	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.1	ADCY5	rs62262391-T	0.224711	4E-22		0.02553696	[0.02-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105118	123105119	rs62262391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs62262391-T	0.198816	5E-27				Affymetrix, Illumina [23472807] (imputed)	N
1524	chr3	123105118	123105119	rs62262391	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q21.1	NR	rs62262391-T	0.224686	4E-30		0.025903	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q21.1		rs59107033-T	NR	2E-19		0.0239	[0.019-0.029] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q21.1		rs59107033-T	NR	1E-14		0.021	[0.016-0.026] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.1	ADCY5	rs59107033-T	0.224605	7E-19		0.023690533	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.1	ADCY5	rs59107033-T	0.224591	6E-10		0.0151662	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q21.1	ADCY5	rs59107033-T	0.224576	6E-23		0.026078576	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105642	123105643	rs59107033	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3q21.1	ADCY5	rs59107033-T	0.2241	2E-10		0.02791658	[0.019-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q21.1	ADCY5	rs17295246-A	0.224636	7E-9		0.015321525	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.1	ADCY5	rs17295246-A	0.224711	7E-23		0.02649562	[0.021-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.1	ADCY5	rs17295246-A	0.224709	2E-12		0.018944327	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q21.1	NR	rs17295246-A	0.225226	1E-10		0.014295	[0.01-0.0186] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs17295246-A	0.198882	1E-28				Affymetrix, Illumina [23467995] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q21.1	NR	rs17295246-A	0.22479	3E-30		0.025578	[0.021-0.03] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q21.1	NR	rs17295246-A	0.22511	5E-14		0.016426	[0.012-0.021] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1524	chr3	123105720	123105721	rs17295246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q21.1		rs17295246-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1524	chr3	123110580	123110581	rs55968914	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Spleen volume	32,860 European ancestry individuals	NA	3q21.1	ADCY5	rs55968914-?	NR	5E-9		0.0487	NR L increase	Affymetrix [9390170] (imputed)	N
1524	chr3	123110580	123110581	rs55968914	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.1	NR	rs55968914-G	0.195865	5E-12				Affymetrix, Illumina [24246363] (imputed)	N
1524	chr3	123117164	123117165	rs1000368	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q21.1	ADCY5	rs1000368-T	0.26	3E-9		0.43	[0.29-0.57] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1524	chr3	123117164	123117165	rs1000368	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q21.1	ADCY5	rs1000368-T	0.2624	2E-7		0.3944	[0.25-0.54] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1524	chr3	123118698	123118699	rs55925662	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q21.1	ADCY5	rs55925662-G	NR	8E-11		0.0212287	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
1524	chr3	123121285	123121286	rs12496583	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q21.1	NR	rs12496583-A	0.7501	2E-8		0.011	[0.0073-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1524	chr3	123125710	123125711	rs9851257	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q21.1	ADCY5	rs9851257-T	0.743524	7E-17		0.029942	[0.023-0.037] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1524	chr3	123125710	123125711	rs9851257	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q21.1	ADCY5	rs9851257-T	0.732892	2E-12		0.020358	[0.015-0.026] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1524	chr3	123127105	123127106	rs9840967	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q21.1	NR	rs9840967-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1524	chr3	123129945	123129946	rs11715633	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	3q21.1		rs11715633-G	0.729468	8E-10		0.0282558	[0.019-0.037] unit increase	NR [11722792] (imputed)	N
1524	chr3	123137561	123137562	rs151013628	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3q21.1	NR	rs151013628-?		4E-7	(PCB74)	1.29	[0.8-1.78] unit increase	Illumina [8736858] (imputed)	N
1524	chr3	123139033	123139034	rs6762009	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration (adjusted for baseline)	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	3q21.1	ADCY5	rs6762009-G	0.16	5E-6		1.45		Illumina [8974355] (imputed)	N
1524	chr3	123139862	123139863	rs79223353	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3q21.1	ADCY5	rs79223353-G	NR	7E-6	(Japanese)	1.08275	[1.04587-1.12092]	Illumina [7521072] (imputed)	N
1524	chr3	123148361	123148362	rs6799356	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q21.1		rs6799356-A	0.7538	4E-8		0.014	[0.0081-0.0199] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1524	chr3	123149815	123149816	rs72966564	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q21.1	ADCY5	rs72966564-C	0.7493000000000001	7E-9		1.0236759		Affymetrix [11880941] (imputed)	N
1524	chr3	123158151	123158152	rs35596775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.1	ADCY5	rs35596775-A	NR	1E-8		0.0163592	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1524	chr3	123158151	123158152	rs35596775	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.1	ADCY5	rs35596775-A	NR	1E-8		0.0164721	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
1524	chr3	123158945	123158946	rs11714441	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q21.1	NR	rs11714441-T	0.3533	2E-7		0.0098	[0.0061-0.0135] unit increase	NR [~ 27400000] (imputed)	N
1524	chr3	123158945	123158946	rs11714441	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.1	Intergenic	rs11714441-T	0.3953	4E-8	(MTAG)	0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1524	chr3	123174831	123174832	rs60054445	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q21.1	ADCY5	rs60054445-C	0.664	6E-12		1.05	[1.04-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
1524	chr3	123178131	123178132	rs13072153	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Chronic kidney disease	658 European ancestry child cases, 1,347 European ancestry child controls	NA	3q21.1	ADCY5, PTPLB	rs13072153-?	0.62	3E-6		1.43	[1.23-1.67]	Illumina [~ 8300000] (imputed)	N
1524	chr3	123195236	123195236	rs201010648	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q21.1		rs201010648-AT	0.340616268	3E-8		0.05446862	[0.035-0.074] unit decrease	Illumina [13429769] (imputed)	N
1525	chr3	123211063	123211064	rs10668	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q21.1		rs10668-?	NR	7E-11				NR [~ 8900000] (imputed)	N
1525	chr3	123215116	123215117	rs2124498	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.1	NR	rs2124498-?	NR	7E-6		4.483	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1525	chr3	123249542	123249543	rs13100104	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q21.1	NR	rs13100104-?	NR	4E-10				Affymetrix [~ 8270000] (imputed)	N
1525	chr3	123283308	123283309	rs16834426	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	3q21.1		rs16834426-A	0.2685	2E-8		0.01557	[0.01-0.021] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1525	chr3	123285855	123285856	rs16834431	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q21.1	NA	rs16834431-T	0.2061	3E-11		0.0139	[0.0098-0.018] unit increase	NR [~ 27400000] (imputed)	N
1525	chr3	123294535	123294536	rs1254386	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q21.1	PTPLB	rs1254386-T	0.808998	5E-8	(12 ms)	0.0384421	[0.024-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1525	chr3	123294535	123294536	rs1254386	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q21.1	PTPLB	rs1254386-T	0.808998	2E-8	(18 ms)	0.0380606	[0.024-0.052] unit increase	Affymetrix [10000000] (imputed)	N
1525	chr3	123294535	123294536	rs1254386	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q21.1	PTPLB	rs1254386-T	0.808998	2E-8	(16 ms)	0.0391589	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1525	chr3	123294535	123294536	rs1254386	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q21.1	PTPLB	rs1254386-T	0.808998	2E-8	(14 ms)	0.0393493	[0.025-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1525	chr3	123300685	123300686	rs78456557	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	3q21.1	PTPLB	rs78456557-C	0.900201	1E-9		0.02364	[0.016-0.031] unit decrease	Affymetrix [19400838] (imputed)	N
1526	chr3	123382830	123382831	rs820324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q21.1		rs820324-G	NR	2E-8		0.0135	[0.0088-0.0182] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1526	chr3	123386865	123386866	rs72626347	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	3q21.1		rs72626347-?	NR	9E-6		0.25	[0.14-0.36] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1526	chr3	123432511	123432512	rs820343	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q21.1	NR	rs820343-?	NR	2E-18				Affymetrix [NR]	N
1527	chr3	123518257	123518258	rs6783507	28584286	Warrier V	2017-06-06	Mol Psychiatry	Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition.	Cognitive empathy	45,465 European ancestry females, 44,088 European ancestry males	NA	3q21.1	NR	rs6783507-T	NR	6E-6	(female)	0.2596	[0.15-0.37] unit increase	Illumina [11133794] (imputed)	N
1527	chr3	123556170	123556171	rs35919256	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.1	Intergenic	rs35919256-A	0.6376	5E-14	(MTAG)	0.0103	[0.0076-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1527	chr3	123556463	123556464	rs2682204	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q21.1	NR	rs2682204-?	NR	1E-34				Affymetrix [NR]	N
1527	chr3	123571753	123571754	rs1343700	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.1	MYLK	rs1343700-A	NR	2E-8		5.636	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1527	chr3	123594418	123594419	rs34067381	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.1		rs34067381-T	0.3617	1E-12		0.0104	[0.0075-0.0133] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1528	chr3	123637181	123637182	rs191153876	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q21.1		rs191153876-T	NR	6E-7		2.8425	[1.75-3.93] unit increase	Illumina [NR] (imputed)	N
1528	chr3	123637181	123637182	rs191153876	28043905	Nicoletti P	2016-12-30	Gastroenterology	Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.	Drug-induced liver injury (fluoroquinolones)	43 European ancestry cases, 10,588 European ancestry controls	NA	3q21.1		rs191153876-?		2E-7		7.33	3.46-15.5	Illumina [505740] (imputed)	N
1528	chr3	123653908	123653909	rs13089785	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q21.1	CCDC14	rs13089785-A	NR	2E-8		0.017276917	[0.011-0.023] unit decrease	Affymetrix [NR]	N
1528	chr3	123674336	123674337	rs13062100	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.1	NR	rs13062100-?	NR	6E-8		5.434	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1528	chr3	123712965	123712966	rs2332719	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	3q21.1	ROPN1	rs2332719-G	0.2784	1E-10		0.014330073	[0.01-0.0187] unit decrease	Affymetrix [up to 18485882] (imputed)	N
1528	chr3	123712965	123712966	rs2332719	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	3q21.1	ROPN1	rs2332719-G	NR	1E-10		0.013331	[0.0093-0.0174] unit decrease	Affymetrix [18485882] (imputed)	N
1528	chr3	123722940	123722941	rs6799337	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.1	Intergenic	rs6799337-T	0.7161	6E-10	(MTAG)	0.0113	[0.0078-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1529	chr3	123795057	123795058	rs116576254	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q21.1		rs116576254-A	NR	2E-7		2.9341	[1.86-4.01] unit increase	Illumina [NR] (imputed)	N
1529	chr3	123824460	123824461	rs13067260	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q21.2	NR	rs13067260-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1529	chr3	123860265	123860266	rs75292075	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Moderate-to-late spontaneous preterm birth	75 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3q21.2	KALRN	rs75292075-?	NR	4E-6		3.61		Illumina [6778521] (imputed)	N
1529	chr3	123860564	123860565	rs1920610	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.2		rs1920610-T	0.6867	2E-10	(conditional-joint)	0.0097	[0.0068-0.0126] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1530	chr3	123880440	123880441	rs4678090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q21.2	Intergenic	rs4678090-T	0.3077	2E-11	(MTAG)	0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1530	chr3	123898876	123898877	rs9856289	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.2	KALRN	rs9856289-A	NR	4E-8		5.5	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1530	chr3	123902599	123902600	rs142863182	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q21.2		rs142863182-T	NR	2E-7		3.0539	[1.93-4.17] unit increase	Illumina [NR] (imputed)	N
1530	chr3	123920113	123920114	rs192210795	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.2	KALRN	rs192210795-T	1.0	1E-6	(AA)	0.542	unit increase	Illumina [NR] (imputed)	N
1530	chr3	123923287	123923288	rs7630133	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.2		rs7630133-A	0.6553	3E-8		0.0082	[0.0053-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1530	chr3	123923921	123923922	rs1444768	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x dichotomous lifestyle risk score interaction (2df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	3q21.2	KALRN	rs1444768-G	0.376	4E-6				NR [2407629] (imputed)	N
1530	chr3	123923921	123923922	rs1444768	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.2	Intergenic	rs1444768-A	0.6543	2E-9	(MTAG)	0.0082	[0.0055-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1530	chr3	123925270	123925271	rs1444766	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Marginal zone lymphoma or systemic lupus erythematosus	741 European ancestry marginal zone lymphoma cases, 7,219 European ancestry systemic lupus erythematosus cases, 21,982 European ancestry controls	NA	3q21.2	KALRN	rs1444766-G	NR	2E-8		1.1692		Illumina [~ 600000] (imputed)	N
1530	chr3	123925270	123925271	rs1444766	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Diffuse large B-cell lymphoma or systemic lupus erythematosus	3,617 European ancestry diffuse large B-cell lymphoma cases, 7,219 European ancestry systemic lupus erythematosus cases, 23,428 European ancestry controls	NA	3q21.2	KALRN	rs1444766-G	NR	1E-8		1.1384		Illumina [~ 600000] (imputed)	N
1530	chr3	123927013	123927014	rs880000	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x dichotomous lifestyle risk score interaction (1df test)	1,924 European ancestry unexposed individuals, 4,330 European ancestry exposed individuals	NA	3q21.2	KALRN	rs880000-G	0.377	9E-7		2.4	[1.44-3.36] unit increase	NR [2407629] (imputed)	N
1530	chr3	123943412	123943413	rs9839631	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3q21.2		rs9839631-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1530	chr3	123975300	123975301	rs34266187	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3q21.2		rs34266187-G	0.632776	3E-10		0.0440458	[0.03-0.058] decrease	Affymetrix [NR]	N
1530	chr3	123975300	123975301	rs34266187	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3q21.2		rs34266187-G	0.633394	3E-9		0.0458101	[0.031-0.061] decrease	Affymetrix [NR]	N
1531	chr3	124006901	124006902	rs146064236	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	3q21.2	NR	rs146064236-?	NR	3E-6		0.1318	[0.077-0.186] unit increase	Illumina [~ 7800000] (imputed)	N
1531	chr3	124010163	124010164	rs148539892	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q21.2		rs148539892-G	NR	4E-6		3.9411	[2.31-5.57] unit increase	Illumina [NR] (imputed)	N
1531	chr3	124048485	124048486	rs72976591	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	3q21.2	KALRN	rs72976591-A	NR	9E-7		1.18	[1.14-1.22]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1531	chr3	124051660	124051661	rs1838472	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q21.2	KALRN	rs1838472-C	NR	4E-7		1.0526316	[1.03-1.07]	Illumina [6627481] (imputed)	N
1531	chr3	124051660	124051661	rs1838472	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q21.2	intergenic	rs1838472-C	NR	2E-7		1.0548522	[1.04-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1531	chr3	124083169	124083170	rs504918	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q21.2	NR	rs504918-C	NR	2E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1531	chr3	124122845	124122846	rs570684	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	3q21.2	KALRN	rs570684-?		4E-7		9.090909	[3.85-20]	Illumina [NR] (imputed)	N
1532	chr3	124166502	124166503	rs529967	27595289	Goyal RK	2016-09-05	Bone Marrow Transplant	Novel HLA-DP region susceptibility loci associated with severe acute GvHD.	Acute graft versus host disease in bone marrow transplantation (donor effect)	315 European ancestry donors (recipients with acute graft versus host disease), 341 European ancestry donors (recipients without graft versus host disease)	NA	3q21.2	KALRN	rs529967-?		4E-8				Affymetrix [905761]	N
1532	chr3	124172249	124172250	rs3772760	26580837	Chen CJ	2015-11-18	Biomark Med	A genome-wide association study on amyotrophic lateral sclerosis in the Taiwanese Han population.	Amyotrophic lateral sclerosis	94 Taiwanese Han ancestry cases, 376 Taiwanese Han ancestry controls	NA	3q21.2	KALRN	rs3772760-A	0.106	2E-6		2.643	[NR]	Affymetrix [633420]	N
1532	chr3	124182692	124182693	rs34541981	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3q21.2		rs34541981-?	NR	2E-10				Illumina [1128286]	N
1532	chr3	124229038	124229039	rs530462	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	3q21.2	NR	rs530462-?	0.79	3E-6		1.5873016	[1.3-1.92]	Illumina [5216266] (imputed)	N
1533	chr3	124273162	124273163	rs143410069	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.2	KALRN	rs143410069-C	0.999	4E-7	(AA)	0.342	unit increase	Illumina [NR] (imputed)	N
1533	chr3	124275686	124275687	rs151058966	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.2	KALRN	rs151058966-G	0.999	5E-7	(AA)	0.341	unit increase	Illumina [NR] (imputed)	N
1533	chr3	124284054	124284055	rs986912	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q21.2	KALRN	rs986912-G	0.6892	3E-9		0.092	[0.061-0.123] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1533	chr3	124292428	124292429	rs2713650	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q21.2		rs2713650-T	NR	1E-10		0.0124	[0.0087-0.0161] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1533	chr3	124292428	124292429	rs2713650	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.2	NR	rs2713650-T	0.256147	4E-13				Affymetrix, Illumina [24558453] (imputed)	N
1533	chr3	124292882	124292883	rs2333024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q21.2	KALRN	rs2333024-T	0.272247	3E-9		0.014900006	[0.01-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr3	124292882	124292883	rs2333024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q21.2	NR	rs2333024-T	0.273265	1E-11		0.014855	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1533	chr3	124297864	124297865	rs6790058	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.2	NR	rs6790058-G	0.316532	3E-12				Affymetrix, Illumina [24332387] (imputed)	N
1533	chr3	124297864	124297865	rs6790058	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Urine pH measurement	149,899 Icelandic ancestry individuals (includes non-array genotyped, whole-genome imputed individuals)	NA	3q21.2	KALRN	rs6790058-G	0.3612	4E-10		0.02	[0.02-0.03] unit increase	Illumina [32500000] (imputed)	N
1533	chr3	124297864	124297865	rs6790058	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Low urine pH	35,897 Icelandic ancestry cases, 112,302 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	3q21.2	KALRN	rs6790058-A	0.6388	7E-6		1.0515248	[1.03-1.08]	Illumina [32500000] (imputed)	N
1533	chr3	124298005	124298006	rs6765865	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.2	KALRN	rs6765865-G	0.331121	8E-10		0.01444108	[0.0098-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr3	124300256	124300257	rs2010099	24586183	Medici M	2014-02-27	PLoS Genet	Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.	Thyroid peroxidase antibody levels	12,353 European ancestry individuals	8,159 European ancestry individuals	3q21.2	KALRN	rs2010099-C	0.91	3E-8		0.024	[0.0091-0.0389] unit increase	Affymetrix, Illumina [up to 3437411] (imputed)	N
1533	chr3	124301615	124301615	rs398071936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q21.2		rs398071936-ATT	NR	5E-9		0.0108	[0.0073-0.0143] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1533	chr3	124303695	124303696	rs56407180	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	3q21.2		rs56407180-?	NR	9E-15		0.161053	[0.12-0.2] unit increase	NR [9800000] (imputed)	N
1533	chr3	124303695	124303696	rs56407180	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	3q21.2		rs56407180-?	NR	1E-137		0.479188	[0.44-0.52] unit decrease	NR [9800000] (imputed)	N
1533	chr3	124303695	124303696	rs56407180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.2	KALRN	rs56407180-T	0.00206399999999995	1E-9		0.15045945	[0.1-0.2] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr3	124303695	124303696	rs56407180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.2	KALRN	rs56407180-T	0.00206099999999998	1E-75		0.4508091	[0.4-0.5] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr3	124304347	124304348	rs3863066	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3q21.2		rs3863066-A	NR	6E-9		0.1077	[0.071-0.144] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
1533	chr3	124308093	124308094	rs11720789	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q21.2	NR	rs11720789-A	0.139962	5E-11		0.019208	[0.013-0.025] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1533	chr3	124309248	124309249	rs67889059	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q21.2	KALRN	rs67889059-G	0.819	5E-9		0.097	[0.064-0.13] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1533	chr3	124320678	124320679	rs13096817	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	3q21.2		rs13096817-T	NR	4E-6		0.7429	unit increase	Illumina [8524982] (imputed)	N
1533	chr3	124321192	124321193	rs3863070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3q21.2	NR	rs3863070-A	NR	6E-10		0.015	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1533	chr3	124321703	124321704	rs6776396	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q21.2	NR	rs6776396-T	0.246402	5E-8		0.00519621	[0.0033-0.0071] unit increase	Affymetrix [16582909] (imputed)	N
1533	chr3	124321703	124321704	rs6776396	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q21.2	NR	rs6776396-T	0.246402	7E-6		0.00492476	[0.0028-0.007] unit increase	Affymetrix [16582965] (imputed)	N
1533	chr3	124321703	124321704	rs6776396	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q21.2	KALRN	rs6776396-C	0.7506	2E-9		0.098	[0.066-0.13] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1533	chr3	124328493	124328494	rs333332	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	3q21.2	KALRN	rs333332-T	0.33	2E-6	(Left HG area)	13.81	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1533	chr3	124328505	124328506	rs1561578	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	3q21.2	KALRN, ROPN1, UMPS	rs1561578-?		2E-6		1.4084507	[1.22-1.67]	Illumina [5352724] (imputed)	N
1533	chr3	124337111	124337112	rs11920280	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q21.2	KALRN	rs11920280-G	0.4878	6E-53		0.05519907	[0.048-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1533	chr3	124337401	124337402	rs34605102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.2	KALRN	rs34605102-A	0.487557	1E-19		0.020451318	[0.016-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr3	124337401	124337402	rs34605102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.2	KALRN	rs34605102-A	0.487559	3E-181		0.06431898	[0.06-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr3	124339526	124339527	rs6771416	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q21.2		rs6771416-A	NR	4E-29		0.0217	[0.018-0.025] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1533	chr3	124339526	124339527	rs6771416	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q21.2	KALRN	rs6771416-G	0.51251	2E-28		0.00569836	[0.0047-0.0067] unit increase	Affymetrix [13995440] (imputed)	N
1533	chr3	124340092	124340093	rs13067286	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3q21.2		rs13067286-G	0.513	5E-9				Affymetrix [10369434] (imputed)	N
1533	chr3	124340221	124340222	rs10512627	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q21.2	NR	rs10512627-C	NR	1E-26		0.0254	[0.021-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1533	chr3	124340221	124340222	rs10512627	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	3q21.2	KALRN	rs10512627-C	NR	5E-10		0.006	[0.004-0.008] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1533	chr3	124345361	124345362	rs2165252	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.2	KALRN	rs2165252-C	0.623139	2E-9		0.015911356	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr3	124345361	124345362	rs2165252	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3q21.2	KALRN	rs2165252-C	0.6227	3E-32		0.04372212	[0.036-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1533	chr3	124345876	124345877	rs619460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q21.2	KALRN	rs619460-A	0.6228	2E-10		0.02372721	[0.016-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1533	chr3	124366889	124366890	rs76445378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3q21.2		rs76445378-C	0.984	2E-19				Affymetrix [10369434] (imputed)	N
1533	chr3	124366889	124366890	rs76445378	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q21.2		rs76445378-C	0.984	5E-18				Affymetrix [10369434] (imputed)	N
1533	chr3	124366889	124366890	rs76445378	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.2	KALRN	rs76445378-T	0.015861	9E-32		0.10601252	[0.088-0.124] unit increase	Affymetrix [93095623] (imputed)	N
1533	chr3	124377164	124377165	rs2175740	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q21.2	NR	rs2175740-A	0.157713	1E-10		0.016345	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1533	chr3	124377325	124377326	rs56106611	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.2	KALRN	rs56106611-G	0.015906	2E-214		0.28026283	[0.26-0.3] unit decrease	Affymetrix [93095623] (imputed)	N
1533	chr3	124377325	124377326	rs56106611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.2	NR	rs56106611-T	0.98477	1E-211				Affymetrix, Illumina [17210439] (imputed)	N
1533	chr3	124377325	124377326	rs56106611	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q21.2	NR	rs56106611-T	0.984254	1E-214		0.238453	[0.22-0.25] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1533	chr3	124377325	124377326	rs56106611	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q21.2	KALRN	rs56106611-G	0.016	2E-54		0.2237808	[0.2-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1533	chr3	124380446	124380447	rs333288	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.2	KALRN	rs333288-A	0.325326	9E-16		0.020802567	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr3	124397321	124397322	rs3830412	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >99th survival percentile)	3,484 European ancestry cases, 2,178 East Asian ancestry cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls	NA	3q21.2	KALRN	rs3830412-A	0.22	8E-7		1.21	1.12-1.30	Illumina [up to 9449311] (imputed)	N
1534	chr3	124400091	124400092	rs637551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q21.2	KALRN	rs637551-G	0.409931	1E-9		0.013674001	[0.0093-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr3	124404187	124404188	rs821367	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3q21.2	KALRN	rs821367-G	0.2419	3E-12		0.02930223	[0.021-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1534	chr3	124433549	124433550	rs893830	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3q21.2	KALRN	rs893830-G	0.84	7E-7				Affymetrix, Illumina [8002429] (imputed)	N
1534	chr3	124435109	124435110	rs332507	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3q21.2		rs332507-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1534	chr3	124435109	124435110	rs332507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q21.2	KALRN	rs332507-C	0.220281	3E-10		0.01698236	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr3	124435109	124435110	rs332507	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q21.2	KALRN	rs332507-C	0.220297	2E-9		0.016039116	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr3	124435109	124435110	rs332507	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q21.2	NR	rs332507-C	0.222163	3E-11		0.01527	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1534	chr3	124435109	124435110	rs332507	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q21.2		rs332507-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1534	chr3	124435109	124435110	rs332507	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q21.2	KALRN	rs332507-C	0.2229	1E-11		0.03009294	[0.021-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1534	chr3	124438585	124438586	rs3772800	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q21.2	KALRN	rs3772800-C	0.16274	8E-10		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1534	chr3	124440779	124440780	rs10934680	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.2	NR	rs10934680-A	0.247366	5E-11				Affymetrix, Illumina [23467995] (imputed)	N
1534	chr3	124440779	124440780	rs10934680	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q21.2	NR	rs10934680-A	0.257906	1E-12		0.015311	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1534	chr3	124441500	124441501	rs606552	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3q21.2	KALRN	rs606552-G	0.2484	4E-36		0.05236807	[0.044-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1534	chr3	124441694	124441695	rs332516	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.2	KALRN	rs332516-A	0.248716	9E-116		0.064506225	[0.059-0.07] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr3	124449405	124449406	rs17843776	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q21.2	UMPS	rs17843776-A	0.981406	6E-123	(orotate)	2.028	[1.86-2.2] unit decrease	Illumina [13039987] (imputed)	N
1534	chr3	124450080	124450081	rs4678145	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q21.2	UMPS	rs4678145-?	NR	4E-13		0.0557001	[0.041-0.071] unit increase	Illumina [4804024] (imputed)	N
1534	chr3	124450080	124450081	rs4678145	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	3q21.2	ITGB5	rs4678145-G	0.868	4E-9		1.12	[1.08-1.16]	Affymetrix [84000000] (imputed)	N
1534	chr3	124450080	124450081	rs4678145	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q21.2	UMPS	rs4678145-C	0.1284	1E-14		0.0639	[0.048-0.08] unit increase	Affymetrix [at least 7947838] (imputed)	N
1534	chr3	124450080	124450081	rs4678145	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q21.2	UMPS	rs4678145-C	0.128	2E-13		0.068	[0.05-0.086] unit increase	Affymetrix [7947838] (imputed)	N
1534	chr3	124451063	124451064	rs9844948	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.2	KALRN	rs9844948-?	NR	8E-10	(orotic acid)	0.31522983	[0.21-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1534	chr3	124451311	124451312	rs10934682	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.2	KALRN	rs10934682-?	NR	8E-10	(orotic acid)	0.31522983	[0.21-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1534	chr3	124452158	124452159	rs9870260	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.2	KALRN	rs9870260-?	NR	8E-10	(orotic acid)	0.31522983	[0.21-0.42] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1534	chr3	124453021	124453022	rs17843797	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q21.2	UMPS	rs17843797-T	0.8719	2E-13		0.0679	[0.05-0.086] unit decrease	NR [8041861] (imputed)	N
1534	chr3	124453021	124453022	rs17843797	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	3q21.2	UMPS, ITGB5	rs17843797-G	0.13	2E-8		1.07	[1.05-1.10]	Affymetrix [9061845] (imputed)	N
1534	chr3	124453113	124453114	rs11916134	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.2	UMPS	rs11916134-G	0.263201	1E-31		0.02989388	[0.025-0.035] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr3	124458332	124458333	rs3772806	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q21.2	UMPS	rs3772806-C	0.758524	9E-163	(orotate)	0.73	[0.68-0.78] unit increase	Illumina [13039987] (imputed)	N
1534	chr3	124465602	124465610	rs200520095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.2	RP11-71H17.9	rs200520095-T	0.419164	2E-9		0.013632701	[0.0092-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr3	124467246	124467247	rs689449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.2	RP11-71H17.9	rs689449-A	0.292468	8E-64		0.041390087	[0.037-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
1534	chr3	124467246	124467247	rs689449	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q21.2	RP11-71H17.9	rs689449-A	0.2933	1E-19		0.03602182	[0.028-0.044] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1534	chr3	124481759	124481760	rs17282078	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.2	ITGB5	rs17282078-A	NR	9E-11		0.0269582	[0.019-0.035] unit increase	Affymetrix [321016] (imputed)	N
1534	chr3	124483088	124483089	rs2291079	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q21.2	ITGB5	rs2291079-G	0.2205	1E-9		0.0164659	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1534	chr3	124484072	124484073	rs3772813	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q21.2		rs3772813-C	0.14	3E-12		6.99	z score increase	Affymetrix [9061022] (imputed)	N
1534	chr3	124484428	124484429	rs1877567	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q21.2	NR	rs1877567-T	0.1673	9E-15				NR [9056863] (imputed)	N
1534	chr3	124490574	124490575	rs12494985	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q21.2		rs12494985-A	0.18	5E-11		6.59	z score increase	Affymetrix [9061022] (imputed)	N
1534	chr3	124490574	124490575	rs12494985	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q21.2	NR	rs12494985-A	0.1893	5E-10				NR [9056863] (imputed)	N
1534	chr3	124496528	124496529	rs62265637	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q21.2	NR	rs62265637-C	0.147836	5E-8		0.0524637	[0.034-0.071] unit decrease	Affymetrix [17914406] (imputed)	N
1535	chr3	124521034	124521035	rs12487905	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q21.2		rs12487905-?	NR	1E-9				NR [9705931] (imputed)	N
1535	chr3	124521034	124521035	rs12487905	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q21.2	ITGB5	rs12487905-T	0.791875	6E-9		0.0132847	[0.0088-0.0178] unit decrease	NR [13737936] (imputed)	N
1535	chr3	124521034	124521035	rs12487905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q21.2		rs12487905-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1535	chr3	124550363	124550364	rs3772840	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q21.2	ITGB5	rs3772840-T	0.4362	3E-8		0.1846	[0.12-0.25] mmHg decrease	Affymetrix [NR] (imputed)	N
1535	chr3	124551966	124551967	rs4141663	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	3q21.2	NR	rs4141663-?	NR	5E-22				NR [up to 7000000]	N
1535	chr3	124551966	124551967	rs4141663	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.2	ITGB5	rs4141663-C		2E-11		0.258	unit increase	Affymetrix [at least 2696785] (imputed)	N
1535	chr3	124551966	124551967	rs4141663	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.2	ITGB5	rs4141663-C		1E-6		0.125	unit increase	Affymetrix [at least 2696785] (imputed)	N
1535	chr3	124551966	124551967	rs4141663	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.2	ITGB5	rs4141663-C		7E-8		0.126	unit increase	Affymetrix [at least 2696785] (imputed)	N
1535	chr3	124557642	124557643	rs6438857	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or systolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	3q21.2	NR	rs6438857-?	NR	2E-23				NR [up to 7000000]	N
1535	chr3	124557642	124557643	rs6438857	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	3q21.2	NR	rs6438857-?	NR	3E-14				NR [up to 7000000]	N
1535	chr3	124557642	124557643	rs6438857	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine and/or diastolic blood pressure	757,601 European ancestry individuals with blood pressure measurements, 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	3q21.2	NR	rs6438857-?	NR	3E-22				NR [up to 7000000]	N
1535	chr3	124561847	124561848	rs12631961	32632093	Guo Y	2020-07-06	Nat Commun	A genome-wide cross-phenotype meta-analysis of the association of blood pressure with migraine.	Migraine without aura and/or pulse pressure	757,601 European ancestry individuals with blood pressure measurements, up to 59,674 European ancestry migraine cases, 316,078 European ancestry controls	NA	3q21.2	NR	rs12631961-?	NR	8E-13				NR [up to 7000000]	N
1535	chr3	124577289	124577290	rs11928547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q21.2		rs11928547-C	NR	2E-14		0.0147	[0.011-0.018] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1535	chr3	124577289	124577290	rs11928547	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3q21.2		rs11928547-C	NR	2E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1535	chr3	124577289	124577290	rs11928547	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q21.2		rs11928547-?	NR	4E-18				NR [~ 8900000] (imputed)	N
1535	chr3	124580341	124580342	rs2619324	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	3q21.2	NR	rs2619324-C		6E-6		0.1201	[0.068-0.172] SD units increase	NR [10700000] (imputed)	N
1535	chr3	124598025	124598026	rs9875516	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q21.2		rs9875516-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1535	chr3	124598525	124598526	rs10804564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3q21.2		rs10804564-G	NR	1E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1536	chr3	124691998	124691999	rs6788620	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q21.2	NR	rs6788620-A	0.4133	3E-9		0.014944845	[0.01-0.02] unit increase	Affymetrix [10549349] (imputed)	N
1536	chr3	124697991	124697992	rs9836224	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Planococcaceae abundance in stool	5,959 Finnish ancestry individuals	NA	3q21.2		rs9836224-T	0.318826	5E-9		0.0162078	[0.011-0.022] unit decrease	Illumina [7980478] (imputed)	N
1536	chr3	124697991	124697992	rs9836224	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillales A abundance in stool	5,959 Finnish ancestry individuals	NA	3q21.2		rs9836224-T	0.318826	2E-8		0.0139704	[0.0091-0.0188] unit decrease	Illumina [7980478] (imputed)	N
1536	chr3	124702306	124702307	rs6763811	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillaceae A abundance in stool	5,959 Finnish ancestry individuals	NA	3q21.2		rs6763811-C	0.318764	1E-8		0.017089	[0.011-0.023] unit decrease	Illumina [7980478] (imputed)	N
1536	chr3	124728625	124728626	rs6438869	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q21.2	HEG1	rs6438869-A		3E-8		0.012	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1537	chr3	124861188	124861189	rs1416218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q21.2	SLC12A8	rs1416218-G	0.52676	2E-12		0.015751591	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1537	chr3	124861188	124861189	rs1416218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q21.2	SLC12A8	rs1416218-G	0.526746	2E-13		0.016479388	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1537	chr3	124861441	124861442	rs11925247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q21.2	SLC12A8	rs11925247-T	0.362218	6E-12		0.0159066	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1537	chr3	124861441	124861442	rs11925247	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q21.2	SLC12A8	rs11925247-T	0.362205	2E-12		0.016370123	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1537	chr3	124881759	124881760	rs1548194	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q21.2		rs1548194-?	NR	5E-15				NR [9705931] (imputed)	N
1537	chr3	124882266	124882267	rs816328	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q21.2		rs816328-C	0.21	9E-28		10.92	z score increase	Affymetrix [9061022] (imputed)	N
1537	chr3	124882266	124882267	rs816328	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q21.2		rs816328-C	0.21	6E-29		11.16	z score increase	Affymetrix [9061022] (imputed)	N
1537	chr3	124882266	124882267	rs816328	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q21.2	NR	rs816328-C	0.2435	1E-17				NR [9056863] (imputed)	N
1537	chr3	124882277	124882278	rs816329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	3q21.2		rs816329-C	0.21	1E-6				NR [13131314] (imputed)	N
1537	chr3	124882277	124882278	rs816329	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q21.2		rs816329-C	0.21	1E-66		17.25	z score increase	Affymetrix [9061022] (imputed)	N
1537	chr3	124882277	124882278	rs816329	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q21.2	NR	rs816329-C	0.2435	1E-17				NR [9056863] (imputed)	N
1537	chr3	124882277	124882278	rs816329	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3q21.2	NR	rs816329-?		2E-10				NR [7428630] (imputed)	N
1537	chr3	124882277	124882278	rs816329	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q21.2	SLC12A8	rs816329-?		3E-15				NR [7428630] (imputed)	N
1537	chr3	124905730	124905731	rs77036479	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q21.2		rs77036479-G	0.97708	3E-8		0.0686652	[0.044-0.093] unit increase	NR [11722792] (imputed)	N
1538	chr3	124911840	124911841	rs1980080	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3q21.2	SLC12A8	rs1980080-C	0.33	3E-11		1.06	[1.05-1.07]	Illumina [at least 560000] (imputed)	N
1538	chr3	124911840	124911841	rs1980080	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3q21.2	SLC12A8	rs1980080-?	NR	3E-11		1.059322	[1.04-1.08]	Illumina [13757430] (imputed)	N
1538	chr3	124918753	124918754	rs6801331	31170924	Kong S	2019-06-06	BMC Med Genet	Identification of female-specific genetic variants for metabolic syndrome and its component traits to improve the prediction of metabolic syndrome in females.	Fasting plasma glucose	4,659 Korean ancestry females	5,273 Korean ancestry females	3q21.2	SLC12A8	rs6801331-T	0.111875	8E-6		1.5869	[0.89-2.29] unit increase	Affymetrix [NR] (imputed)	N
1538	chr3	124921456	124921457	rs9873519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q21.2		rs9873519-T	NR	8E-9		0.0373	[0.025-0.05] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1538	chr3	124921456	124921457	rs9873519	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q21.2		rs9873519-T	NR	1E-9		0.0475	[0.032-0.063] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1538	chr3	124921456	124921457	rs9873519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q21.2	NR	rs9873519-C	0.466	4E-16		0.0375	[0.028-0.047] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1538	chr3	124921456	124921457	rs9873519	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q21.2	NR	rs9873519-C	0.5288	3E-22		0.0373	[0.03-0.045] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1538	chr3	124921697	124921698	rs667718	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.2	SLC12A8	rs667718-G	0.712252	6E-16		0.020080253	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1538	chr3	124921919	124921920	rs12497133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q21.2		rs12497133-A	NR	2E-14		0.0177	[0.013-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1538	chr3	124921919	124921920	rs12497133	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3q21.2		rs12497133-A	0.327226651	2E-8		1.051326	[1.033193658-1.069776677]	Illumina [8919992] (imputed)	N
1538	chr3	124921919	124921920	rs12497133	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q21.2	SLC12A8	rs12497133-A	0.323	1E-8		1.04	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1538	chr3	124923525	124923526	rs595907	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	3q21.2	SLC12A8	rs595907-T	0.096	2E-6		0.663	[0.559 - 0.787]	Illumina [5398302] (imputed)	N
1538	chr3	124926636	124926637	rs649961	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q21.2	SLC12A8	rs649961-T	0.4651	1E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1538	chr3	124927204	124927205	rs6762589	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q21.2	SLC12A8	rs6762589-A	0.41	5E-9		5.84	z-score increase	Affymetrix [4312306] (imputed)	N
1538	chr3	124927667	124927668	rs5852449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q21.2		rs5852449-C	NR	8E-16		0.0197	[0.015-0.025] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1538	chr3	124935786	124935787	rs537608761	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3q21.2		rs537608761-T	NR	9E-6		1.76579		Affymetrix, Illumina [62056310] (imputed)	N
1538	chr3	125026293	125026294	rs62270334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q21.2		rs62270334-C	NR	5E-9		0.0125	[0.0084-0.0166] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1538	chr3	125041053	125041054	rs35430872	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q21.2	NR	rs35430872-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1539	chr3	125118081	125118082	rs7640441	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q21.2	ZNF148	rs7640441-A	0.2457	1E-9		0.027525	[0.019-0.036] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1539	chr3	125148286	125148287	rs6438900	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3q21.2		rs6438900-?	NR	1E-10		0.0150486	[0.01-0.02] unit increase	NR [6912294] (imputed)	N
1539	chr3	125148286	125148287	rs6438900	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	3q21.2	NR	rs6438900-G	0.260706	1E-9		0.013584	[0.0092-0.0179] unit increase	Affymetrix [16668957] (imputed)	N
1539	chr3	125148286	125148287	rs6438900	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	3q21.2	SNX4	rs6438900-C	0.697	3E-8		0.324	[0.21-0.44] unit increase	Affymetrix [NR] (imputed)	N
1539	chr3	125148475	125148476	rs7620749	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q21.2	NR	rs7620749-G	0.161351	4E-11		0.016399	[0.012-0.021] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1539	chr3	125148475	125148476	rs7620749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q21.2		rs7620749-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1539	chr3	125149487	125149488	rs9859616	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q21.2	SNX4	rs9859616-A	0.2189	4E-10		0.0237	[0.016-0.031] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1539	chr3	125149487	125149488	rs9859616	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3q21.2	NR	rs9859616-A	0.2145	3E-6	(men)	0.0286	[0.017-0.041] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1540	chr3	125196903	125196904	rs57654548	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q21.2	SNX4	rs57654548-C	0.873846	4E-8		0.0116291	[0.0075-0.0158] unit increase	Affymetrix [12370749]	N
1540	chr3	125205105	125205106	rs9848399	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	3q21.2	NR	rs9848399-A	0.8716	3E-6		0.1726	[0.1-0.245] unit increase	NR [NR] (imputed)	N
1540	chr3	125207164	125207165	rs7621844	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Major depressive disorder x sex interaction	15,970 European ancestry cases, 24,984 European ancestry controls	NA	3q21.2	SNX4	rs7621844-A	0.1431	3E-6		0.1666	[0.097-0.237] unit decrease	NR [NR] (imputed)	N
1540	chr3	125250798	125250799	rs529963700	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q21.2		rs529963700-C	NR	2E-12		36.9015	[26.6-47.2] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1541	chr3	125322454	125322455	rs62270208	33190678	Ho YYW	2020-10-01	Twin Res Hum Genet	Comparison of Genome-Wide Association Scans for Quantitative and Observational Measures of Human Hair Curvature.	Hair curvature (quantitative)	2,225 European ancestry individuals	NA	3q21.2	NR	rs62270208-?		3E-6		0.014	[0.0078-0.0202] unit decrease	Illumina [7533529] (imputed)	N
1542	chr3	125477761	125477762	rs2735247	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Coprococcus comes	3,521 European or unknown ancestry individuals	NA	3q21.2		rs2735247-G	NR	3E-6		0.1123	[0.065-0.16] unit decrease	NR [4841651] (imputed)	N
1543	chr3	125592856	125592857	rs71327718	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (HVA/5-HIAA ratio)	up to 398 European ancestry individuals	NA	3q21.2	intergenic	rs71327718-G		7E-6		0.2152	unit increase	Illumina [5767231] (imputed)	N
1543	chr3	125618724	125618725	rs141015398	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	3q21.2	NR	rs141015398-A	0.9894	3E-8	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1543	chr3	125649402	125649403	rs7615952	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	3q21.2	LOC200810	rs7615952-?	NR	5E-7	(DBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1543	chr3	125649402	125649403	rs7615952	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	3q21.2	LOC200810	rs7615952-?	NR	4E-6	(DBP,CPD)			Affymetrix [2485435] (imputed)	N
1544	chr3	125788764	125788765	rs113034576	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	3q21.2	SLC41A3	rs113034576-G	0.0308	3E-6		1.31403	NR	Affymetrix, Illumina [30341632] (imputed)	N
1545	chr3	125836672	125836673	rs6792028	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3q21.3		rs6792028-G	0.602004	3E-11		0.0266481	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
1545	chr3	125854408	125854409	rs2276724	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	3q21.3	NR	rs2276724-T	0.8414	2E-11	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1545	chr3	125867246	125867247	rs3845959	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q21.3	ALDH1L1	rs3845959-T	NR	2E-7		1.0787	NR	Affymetrix, Illumina [8278136] (imputed)	N
1545	chr3	125871772	125871773	rs16837171	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q21.3	NR	rs16837171-?	NR	2E-38				Affymetrix [NR]	N
1545	chr3	125875830	125875831	rs4646705	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	3q21.3	NR	rs4646705-A	0.4966	2E-8	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1545	chr3	125877289	125877290	rs149080804	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3q21.3		rs149080804-G	0.998608	3E-23		0.518812	[0.42-0.62] unit increase	NR [11722792] (imputed)	N
1545	chr3	125900952	125900953	rs114542799	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q21.3	NR	rs114542799-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1545	chr3	125904164	125904165	rs1107366	23378610	Xie W	2013-02-01	Diabetes	Genetic variants associated with glycine metabolism and their role in insulin sensitivity and type 2 diabetes.	Metabolite levels	1,004 European ancestry individuals	339 European ancestry individuals	3q21.3	ALDH1L1, KLF15	rs1107366-G	0.51	2E-6	(glycine/serine)	0.019	[0.011-0.027] unit increase	Affymetrix [909508] (imputed)	N
1545	chr3	125904687	125904688	rs750714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs750714-A	0.388156	1E-12				Affymetrix, Illumina [24246363] (imputed)	N
1545	chr3	125904687	125904688	rs750714	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q21.3	NR	rs750714-A	0.420448	1E-14		0.014167	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1545	chr3	125904687	125904688	rs750714	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q21.3		rs750714-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1545	chr3	125905079	125905080	rs2364368	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q21.3		rs2364368-T	NR	2E-8		0.0117	[0.0076-0.0158] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1545	chr3	125905079	125905080	rs2364368	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q21.3	ALDH1L1	rs2364368-A	0.582477	5E-10		0.00247213	[0.0017-0.0032] unit decrease	Affymetrix [13995440] (imputed)	N
1545	chr3	125905079	125905080	rs2364368	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	30,118 European ancestry individuals	NA	3q21.3	ALDH1L1	rs2364368-T	0.402329	2E-28		0.094881	[0.078-0.112] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1545	chr3	125905079	125905080	rs2364368	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	19,112 European ancestry male individuals	NA	3q21.3	ALDH1L1	rs2364368-T	0.402329	2E-22		0.103751	[0.083-0.125] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1545	chr3	125905079	125905080	rs2364368	31070104	Jia Q	2019-05-09	J Am Heart Assoc	Genetic Determinants of Circulating Glycine Levels and Risk of Coronary Artery Disease.	Glycine levels	11,006 European ancestry female individuals	NA	3q21.3	ALDH1L1	rs2364368-T	0.402329	2E-9		0.084058	[0.057-0.112] unit increase	Affymetrix, Illumina [7487927] (imputed)	N
1545	chr3	125905336	125905348	rs146582756	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q21.3		rs146582756-A	NR	3E-8		0.0134	[0.0087-0.0181] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1545	chr3	125905336	125905348	rs146582756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.3	ALDH1L1, ALDH1L1-AS2	rs146582756-A	0.417216	1E-9		0.0137826	[0.0097-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr3	125905336	125905348	rs146582756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q21.3	ALDH1L1, ALDH1L1-AS2	rs146582756-A	0.417202	2E-9		0.01349658	[0.0091-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
1545	chr3	125906178	125906179	rs10934753	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3q21.3		rs10934753-G	0.582884	4E-68		0.0690103	[0.061-0.077] unit decrease	NR [11722792] (imputed)	N
1545	chr3	125906178	125906179	rs10934753	24651765	Williams SR	2014-03-20	PLoS Genet	Genome-wide meta-analysis of homocysteine and methionine metabolism identifies five one carbon metabolism loci and a novel association of ALDH1L1 with ischemic stroke.	Plasma homocysteine levels (post-methionine load test)	2,710 European and other ancestry individuals, 1,725 European ancestry individuals, 258 African ancestry individuals, 117 individuals	NA	3q21.3	ALDH1L1	rs10934753-A	0.43	7E-13		0.193	[0.14-0.25] unit increase	Affymetrix, Illumina [up to 11000000] (imputed)	N
1545	chr3	125906236	125906237	rs10934754	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q21.3	ALDH1L1-AS2	rs10934754-T	0.6039	2E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1545	chr3	125907391	125907392	rs35331719	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q21.3		rs35331719-A	NR	2E-16		0.0138	[0.01-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1545	chr3	125908309	125908310	rs9851577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels (CMS)	6,263 Finnish ancestry men	NA	3q21.3	ALDH1L1	rs9851577-?	NR	8E-14	(Gly)	0.084333494	NR unit increase	Illumina [609262]	N
1545	chr3	125908309	125908310	rs9851577	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Serum metabolite levels	6,263 Finnish ancestry men	NA	3q21.3	ALDH1L1	rs9851577-?	NR	2E-9	(Gly)	0.078973845	NR unit increase	Illumina [609262]	N
1545	chr3	125909524	125909525	rs4679103	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	3q21.3	BC039521	rs4679103-T	0.31	4E-8		0.318	[0.2-0.43] unit decrease	Affymetrix [NR] (imputed)	N
1545	chr3	125910380	125910381	rs9862438	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	3q21.3	ALDH1L1-AS2	rs9862438-T	0.416	1E-30		0.058	[0.046-0.07] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1545	chr3	125911987	125911988	rs561118379	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q21.3	ALDH1L1-AS2, ALDH1L1	rs561118379-A	0.9968	3E-6		0.3878	[0.22-0.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1545	chr3	125911987	125911988	rs561118379	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q21.3	ALDH1L1-AS2, ALDH1L1	rs561118379-A	0.9968	3E-6		0.3878	[0.22-0.55] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1546	chr3	125985068	125985069	rs79064296	30837465	Wittemans LBL	2019-03-05	Nat Commun	Assessing the causal association of glycine with risk of cardio-metabolic diseases.	Glycine levels	80,003 European ancestry individuals	NA	3q21.3	NR	rs79064296-T	0.0446	2E-10	(conditional)			Affymetrix, Illumina [NR] (imputed)	N
1546	chr3	125986790	125986791	rs1447655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs1447655-T	0.0122	9E-9	(CTSS)	0.01324	NR unit increase	Illumina [1671387] (imputed)	N
1546	chr3	125986790	125986791	rs1447655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs1447655-T	0.0122	7E-9	(LIPA)	0.02794	NR unit increase	Illumina [1671387] (imputed)	N
1546	chr3	125986790	125986791	rs1447655	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs1447655-T	0.0122	3E-8	(HEXA)	0.04395	NR unit increase	Illumina [1671387] (imputed)	N
1546	chr3	125987923	125987924	rs9825772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs9825772-A	0.439492	4E-11				Affymetrix, Illumina [24653286] (imputed)	N
1546	chr3	125987923	125987924	rs9825772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q21.3	NR	rs9825772-A	0.407913	2E-13		0.014192	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
1546	chr3	125987923	125987924	rs9825772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs9825772-A	0.43826	1E-10				Affymetrix, Illumina [24558453] (imputed)	N
1546	chr3	125987923	125987924	rs9825772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q21.3	NR	rs9825772-A	0.407889	2E-13		0.014092	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1546	chr3	125993273	125993274	rs115182912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q21.3		rs115182912-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1546	chr3	125993273	125993274	rs115182912	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q21.3		rs115182912-?	NR	5E-36				NR [~ 8900000] (imputed)	N
1546	chr3	125993273	125993274	rs115182912	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q21.3	NR	rs115182912-A	0.0213922	2E-69		0.18859	[0.17-0.21] unit increase	NR [19129689] (imputed)	N
1546	chr3	125993273	125993274	rs115182912	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	3q21.3	intergenic	rs115182912-G	NR	3E-11		0.312401	[0.22-0.4] unit increase	Affymetrix [27512692] (imputed)	N
1546	chr3	125993273	125993274	rs115182912	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q21.3	ALDH1L1, KLF15	rs115182912-A	NR	1E-16		0.173615	NR unit increase	NR [NR] (imputed)	N
1546	chr3	126012420	126012421	rs11718633	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q21.3	KLF15	rs11718633-T	0.1936	8E-9		0.0267	[0.018-0.036] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1546	chr3	126012420	126012421	rs11718633	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q21.3	KLF15	rs11718633-T	0.198	7E-9		0.027933	[0.018-0.037] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1546	chr3	126012851	126012852	rs6804946	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q21.3		rs6804946-C	NR	2E-17		0.0216	[0.017-0.027] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1546	chr3	126012851	126012852	rs6804946	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q21.3	NR	rs6804946-T	0.8	2E-18		0.02	[0.015-0.025] unit increase	NR [NR]	N
1546	chr3	126014826	126014827	rs76358556	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q21.3	NR	rs76358556-G	NR	5E-18		0.0256	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1546	chr3	126014826	126014827	rs76358556	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q21.3	NR	rs76358556-G	0.204856	9E-22		0.0378021	[0.03-0.046] unit decrease	NR [19129689] (imputed)	N
1546	chr3	126049304	126049305	rs9880406	28250457	Scerri TS	2017-02-27	Nat Genet	Genome-wide analyses identify common variants associated with macular telangiectasia type 2.	Macular telangiectasia type 2	476 European ancestry cases, 1,733 European ancestry controls	172 European ancestry cases, 1,134 European ancestry controls	3q21.3	ALDH1L1, KLF15	rs9880406-?	0.8051	2E-7		1.5873016	[1.33-1.89]	Illumina [6310381] (imputed)	N
1546	chr3	126060314	126060315	rs7641302	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q21.3		rs7641302-C	NR	4E-13		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
1546	chr3	126062304	126062304	rs70940816	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q21.3		rs70940816-?	NR	7E-10				Affymetrix [NR] (imputed)	N
1546	chr3	126068778	126068779	rs9850626	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	3q21.3		rs9850626-T	0.24	2E-8		0.13	[0.091-0.169] unit decrease	Affymetrix, Illumina [8004650] (imputed)	N
1546	chr3	126068947	126068948	rs35892873	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q21.3	NR	rs35892873-T	0.310046	7E-58		0.0554041	[0.049-0.062] unit decrease	NR [19129689] (imputed)	N
1546	chr3	126068947	126068948	rs35892873	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	3q21.3	intergenic	rs35892873-C	NR	5E-13		0.110725	[0.081-0.141] unit decrease	Affymetrix [27512692] (imputed)	N
1546	chr3	126068947	126068948	rs35892873	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q21.3	KLF15	rs35892873-T	NR	4E-16		0.0547856	NR unit decrease	NR [NR] (imputed)	N
1546	chr3	126070735	126070736	rs144702822	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	3q21.3		rs144702822-?	NR	9E-9		0.338532	[0.21-0.47] unit increase	NR [9800000] (imputed)	N
1546	chr3	126070735	126070736	rs144702822	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	3q21.3		rs144702822-?	NR	3E-9		0.384075	[0.26-0.51] unit increase	NR [9800000] (imputed)	N
1546	chr3	126070735	126070736	rs144702822	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	C-reactive protein levels	436,939 European ancestry individuals	NA	3q21.3		rs144702822-?	NR	4E-12		0.436977	[0.31-0.57] unit increase	NR [9800000] (imputed)	N
1546	chr3	126073487	126073488	rs189318146	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Job SOC coding: Electrical engineers (UKB data field 22617_2123)	847 European ancestry cases, 112,994 European ancestry controls	NA	3q21.3		rs189318146-T	0.003235	1E-9		3.5	[2.37-4.63] unit increase	NR [11842647] (imputed)	N
1547	chr3	126091659	126091660	rs9878451	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q21.3	NR	rs9878451-G	NR	5E-10		0.0451426	NR unit decrease	NR [NR] (imputed)	N
1547	chr3	126099100	126099101	rs114490818	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	3q21.3		rs114490818-A	0.02204	3E-8		2.067397	NR	Affymetrix [7846216] (imputed)	N
1547	chr3	126100965	126100965	rs143640167	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3q21.3		rs143640167-?	NR	5E-6		0.7201101	[0.41-1.03] unit increase	Illumina [9906551] (imputed)	N
1547	chr3	126100965	126100965	rs143640167	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3q21.3		rs143640167-?	NR	6E-6		0.7532746	[0.43-1.08] unit increase	Illumina [9901720] (imputed)	N
1547	chr3	126101284	126101285	rs6439006	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	3q21.3		rs6439006-?	NR	9E-7		0.05	[0.03-0.07] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1547	chr3	126160600	126160601	rs4679121	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3q21.3	ZXDC	rs4679121-T	0.1048	6E-6				Illumina [4404269] (imputed)	N
1547	chr3	126199096	126199097	rs58967320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q21.3		rs58967320-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1547	chr3	126200145	126200146	rs777513	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	3q21.3		rs777513-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1547	chr3	126207221	126207222	rs777483	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cerebellum cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q21.3	UROC1	rs777483-?		6E-6				Illumina [4322238] (imputed)	N
1547	chr3	126208907	126208908	rs6794670	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q21.3	UROC1	rs6794670-C	0.798458	2E-10		0.0146855	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
1547	chr3	126210590	126210591	rs765898159	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q21.3	UROC1	rs765898159-A	0.0013	9E-6		1.2308	[0.69-1.77] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1547	chr3	126212566	126212567	rs1091553	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.3	ZXDC	rs1091553-?	NR	4E-6	(LPC 18:0)	0.1784932	[0.1-0.25] unit increase	Affymetrix [at least 2500000] (imputed)	N
1547	chr3	126212566	126212567	rs1091553	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.3	ZXDC	rs1091553-?	NR	3E-6	(LPE 22:6)	0.18253939	[0.11-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
1547	chr3	126215129	126215130	rs6797423	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	3q21.3	NR	rs6797423-?	NR	2E-8			[NR]	NR [1665663]	N
1547	chr3	126215693	126215694	rs1687482	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	3q21.3	NR	rs1687482-?		4E-6				Illumina [up to 6969139] (imputed)	N
1547	chr3	126215693	126215694	rs1687482	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3q21.3	UROC1	rs1687482-T	0.1799475	7E-7		0.310997	[0.19-0.43] unit decrease	Illumina [6952813] (imputed)	N
1547	chr3	126215693	126215694	rs1687482	28040410	Meyers JL	2016-12-28	Int J Psychophysiol	A genome wide association study of fast beta EEG in families of European ancestry.	Fast beta electroencephalogram	1,564 European ancestry individuals from 117 alcohol dependence affected families	NA	3q21.3	UROC1	rs1687482-T	0.151	8E-8		0.162	[0.10-0.22] unit decrease	Illumina [12973748] (imputed)	N
1547	chr3	126218210	126218211	rs9871671	31667592	Milet J	2019-10-30	Hum Genet	First genome-wide association study of non-severe malaria in two birth cohorts in Benin.	Recurrence of malaria infection (mild or asymptomatic)	525 Beninese individuals	250 Beninese individuals	3q21.3	UROC1	rs9871671-A	0.11	8E-6		1.49	[1.22-1.81]	Illumina [15566900] (imputed)	N
1548	chr3	126222356	126222357	rs1799390	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	3q21.3	UROC1	rs1799390-T	0.3065	7E-6		0.0296	[0.017-0.043] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1548	chr3	126223488	126223489	rs190321959	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	UROC1	rs190321959-T	0.997	3E-7	(AA)	0.965	NR unit increase	Illumina [NR] (imputed)	N
1548	chr3	126230103	126230104	rs777490	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIGIRR	5,368 Icelandic ancestry individuals	NA	3q21.3		rs777490-T	0.3088	2E-20		0.190848	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126230103	126230104	rs777490	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q21.3		rs777490-T	NR	4E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1548	chr3	126230953	126230954	rs1168594	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q21.3	NR	rs1168594-A	0.303932	2E-14		0.015574	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1548	chr3	126236522	126236523	rs147828466	31136621	van de Putte R	2019-05-28	PLoS One	Exome chip association study excluded the involvement of rare coding variants with large effect sizes in the etiology of anorectal malformations.	Anorectal malformation	568 European ancestry cases, 1,860 European ancestry controls	NA	3q21.3	UROC1	rs147828466-A	0.242	6E-10				Illumina [239042]	N
1548	chr3	126237412	126237413	rs1687479	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs1687479-T	0.66	3E-11		0.0651	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr3	126252505	126252506	rs4679256	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TNFAIP6	5,363 Icelandic ancestry individuals	NA	3q21.3		rs4679256-T	0.2565	1E-41		0.277635	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126253905	126253906	rs79582082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs79582082-C	0.250389	8E-10				Affymetrix, Illumina [23467995] (imputed)	N
1548	chr3	126257078	126257079	rs34987672	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SIRT2	5,353 Icelandic ancestry individuals	NA	3q21.3		rs34987672-T	0.2616	3E-25		0.213273	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126257235	126257236	rs1873400	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TFPI2	5,364 Icelandic ancestry individuals	NA	3q21.3		rs1873400-A	0.3027	3E-12		0.138361	[0.1-0.177] unit decrease	Illumina [7506463] (imputed)	N
1548	chr3	126258284	126258285	rs35656703	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RBL2	5,363 Icelandic ancestry individuals	NA	3q21.3		rs35656703-A	0.26	2E-42		0.277116	[0.24-0.32] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126259368	126259369	rs13079087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF146	5,346 Icelandic ancestry individuals	NA	3q21.3		rs13079087-A	0.3028	6E-14		0.139255	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126259368	126259369	rs13079087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NPPB	5,360 Icelandic ancestry individuals	NA	3q21.3		rs13079087-A	0.3028	4E-178		0.537327	[0.5-0.57] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126259368	126259369	rs13079087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KRT23	5,351 Icelandic ancestry individuals	NA	3q21.3		rs13079087-A	0.3028	3E-87		0.372322	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126259368	126259369	rs13079087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH2	5,364 Icelandic ancestry individuals	NA	3q21.3		rs13079087-A	0.3028	1E-30		0.232052	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126259368	126259369	rs13079087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ITIH1	5,363 Icelandic ancestry individuals	NA	3q21.3		rs13079087-A	0.3028	6E-31		0.233591	[0.19-0.27] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126261201	126261202	rs1056524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q21.3	CHST13	rs1056524-A	0.297	8E-26	(Inter-alpha-trypsin inhibitor heavy chain H1, ITIH1.7955.195.3)	0.28	[0.22-0.34] unit increase	Affymetrix [10572788] (imputed)	N
1548	chr3	126264059	126264060	rs1552641	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPP1	5,362 Icelandic ancestry individuals	NA	3q21.3		rs1552641-A	0.2599	1E-15		0.170943	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
1548	chr3	126264059	126264060	rs1552641	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q21.3	CHST13	rs1552641-A	0.249	9E-20	(NAD-dependent protein deacetylase sirtuin-2, SIRT2.5030.52.1)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1548	chr3	126267106	126267107	rs11920905	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3	C3orf22	rs11920905-A	0.266905	7E-11		0.016311264	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1548	chr3	126268917	126268918	rs869463	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs869463-A	0.26	4E-39		0.1591	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1548	chr3	126289205	126289206	rs13078546	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.3	NR	rs13078546-?	NR	3E-6		4.705	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1548	chr3	126304311	126304312	rs188764199	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	TXNRD3NB	rs188764199-C	0.997	4E-6	(AA)	0.803	NR unit increase	Illumina [NR] (imputed)	N
1549	chr3	126383332	126383333	rs191347135	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	NUP210P1	rs191347135-A	0.998	2E-6	(AA)	0.852	NR unit increase	Illumina [NR] (imputed)	N
1549	chr3	126448512	126448513	rs11706588	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy with decreased visual acuity in type 2 diabetes	469 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	3q21.3	CHCHD6	rs11706588-C	0.1305	7E-7		1.89	[1.64-2.14]	Affymetrix, Illumina [6717712] (imputed)	N
1549	chr3	126476102	126476103	rs141232081	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.3	NR	rs141232081-?	NR	4E-6		4.619	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1550	chr3	126519836	126519837	rs74405815	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q21.3		rs74405815-?	NR	3E-6	(MLM)	0.3438862	[0.2-0.49] unit increase	Illumina [~ 9000000] (imputed)	N
1551	chr3	126650661	126650662	rs138365559	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q21.3		rs138365559-T	NR	3E-8		0.66	[0.43-0.89] unit decrease	Affymetrix [509886] (imputed)	N
1551	chr3	126653410	126653411	rs187806138	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	3q21.3	NR	rs187806138-T	0.025	2E-6		3.11	[1.95-4.96]	Illumina [7959153] (imputed)	N
1551	chr3	126682757	126682758	rs190238591	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q21.3		rs190238591-T	NR	2E-8		0.665	[0.43-0.9] unit decrease	Affymetrix [509886] (imputed)	N
1551	chr3	126691103	126691104	rs61263161	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3q21.3	CHCHD6	rs61263161-G	0.83005	1E-51		0.9164259	NR	Affymetrix [~ 9600000] (imputed)	N
1551	chr3	126691103	126691104	rs61263161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q21.3		rs61263161-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1551	chr3	126692730	126692731	rs35154032	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q21.3	PLXNA1	rs35154032-A	0.681	2E-21	(Plexin-A1, PLXNA1.9005.16.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
1551	chr3	126703050	126703051	rs192234977	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q21.3	PLXNA1	rs192234977-A	0.0375	6E-6		0.0897	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1551	chr3	126706799	126706800	rs7649075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.3	PLXNA1	rs7649075-G	0.30977	2E-10		0.0154140955	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1551	chr3	126706799	126706800	rs7649075	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q21.3		rs7649075-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1551	chr3	126707375	126707376	rs1106863	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs1106863-C	0.343822	3E-14				Affymetrix, Illumina [24588908] (imputed)	N
1551	chr3	126719517	126719518	rs190606857	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q21.3		rs190606857-T	NR	3E-8		0.656	[0.42-0.89] unit decrease	Affymetrix [509886] (imputed)	N
1551	chr3	126732046	126732047	rs1347003	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLXNA1	5,364 Icelandic ancestry individuals	NA	3q21.3		rs1347003-C	0.3144	4E-20		0.185381	[0.15-0.22] unit decrease	Illumina [7506463] (imputed)	N
1551	chr3	126735014	126735015	rs76288851	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	3q21.3	PLXNA1, CHCHD6, C3orf56, RCC2P4	rs76288851-?		4E-6		1.385	[1.22-1.58]	Illumina [9389922] (imputed)	N
1551	chr3	126737465	126737466	rs73861745	31469255	Lule SA	2019-08-30	Mol Genet Genomic Med	A genome-wide association and replication study of blood pressure in Ugandan early adolescents.	Systolic blood pressure	815 African ancestry early adolescents	NA	3q21.3	PLXNA1	rs73861745-A	0.26	1E-6		2.25	[-6.7072-11.2072] unit increase	Illumina [20074711] (imputed)	N
1551	chr3	126739011	126739012	rs891762	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q21.3	PLXNA1	rs891762-G	0.3175	1E-11	(PLXNA1, 9005_16_3)	0.18232746	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
1552	chr3	126787158	126787159	rs11921451	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q21.3	C3orf56	rs11921451-?		5E-6				Illumina [859311]	N
1553	chr3	126931172	126931173	rs11716691	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (attention/processing speed) (slope of z-scores)	1,145 European ancestry individuals	NA	3q21.3	C3orf56, LOC101927123	rs11716691-G	0.15	9E-6		0.24	unit increase	Illumina [5600000] (imputed)	N
1553	chr3	126950125	126950126	rs4234284	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel)	62 Japanese ancestry cases, 42 Japanese ancestry controls	NA	3q21.3	C3orf56	rs4234284-T	0.23	3E-6	(Dominant)	3.01	[1.62-5.6]	Illumina [555600]	N
1553	chr3	126961147	126961148	rs13075436	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	3q21.3	AC112482.3	rs13075436-C	NR	6E-6	(AA)	1.3	[0.71-1.89] unit decrease	Affymetrix [~ 2300000] (imputed)	N
1553	chr3	126990805	126990806	rs6439045	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	3q21.3		rs6439045-T	0.121991	1E-5		0.0127992	[0.0072-0.0184] unit decrease	Illumina [13900000] (imputed)	N
1553	chr3	126993098	126993099	rs9871760	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	3q21.3	PLXNA1	rs9871760-?	NR	4E-6		0.007	[NR] unit decrease	Illumina [478011]	N
1553	chr3	127003109	127003110	rs9821664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.3		rs9821664-A	0.2105	5E-8		0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1553	chr3	127003109	127003110	rs9821664	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.3	Intergenic	rs9821664-A	0.2105	2E-9	(MTAG)	0.0097	[0.0066-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1554	chr3	127024675	127024676	rs191081676	34469433	Ashvetiya T	2021-09-01	PLoS One	Identification of novel genetic susceptibility loci for thoracic and abdominal aortic aneurysms via genome-wide association study using the UK Biobank Cohort.	Abdominal aortic aneurysm	1,363 European, Indian, Caribbean, African ancestry cases, 27,260  European, Indian, Caribbean, African ancestry controls	NA	3q21.3		rs191081676-?	NR	3E-7		2.51895		NR [NR] (imputed)	N
1554	chr3	127027593	127027594	rs62263995	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.3	Intergenic	rs62263995-A	0.0605	1E-9	(MTAG)	0.0212	[0.014-0.028] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1554	chr3	127057551	127057554	rs148387471	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	3q21.3	NR	rs148387471-ATAG		1E-6		0.1459	[0.087-0.205] SD units decrease	NR [10700000] (imputed)	N
1554	chr3	127057551	127057554	rs148387471	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	3q21.3	NR	rs148387471-ATAG		6E-6		0.0936	[0.053-0.134] SD units decrease	NR [10700000] (imputed)	N
1554	chr3	127072856	127072857	rs72960531	33742053	Wells HRR	2021-03-19	Sci Rep	Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank.	Tinnitus	91,424 British ancestry individuals	NA	3q21.3	LINC02016	rs72960531-C	0.95	1E-6		0.125	[0.074-0.176] unit increase	Affymetrix [9740198] (imputed)	N
1554	chr3	127074824	127074825	rs13078360	30850646	Tziotzios C	2019-03-08	Nat Commun	Genome-wide association study in frontal fibrosing alopecia identifies four susceptibility loci including HLA-B*07:02.	Frontal fibrosing alopecia	1,016 European ancestry cases, 4,145 European ancestry controls		3q21.3	NR	rs13078360-A	0.2	2E-6		1.35	[1.20-1.53]	Illumina [~ 8000000] (imputed)	N
1554	chr3	127078339	127078340	rs7428297	25187353	Goldstein JI	2014-09-04	Nat Commun	Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.	Clozapine-induced agranulocytosis	161 European ancestry cases, 1,196 European ancestry clozapine-treated and untreated controls	NA	3q21.3	intergenic	rs7428297-T	0.125	8E-6		2.0602	[1.74-2.38]	Illumina [8809853] (imputed)	N
1554	chr3	127078339	127078340	rs7428297	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q21.3	GPR175	rs7428297-?	NR	4E-6	(TAG 56:5)	0.22525653	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1554	chr3	127109621	127109622	rs7610266	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	3q21.3	RP11-88I21.2	rs7610266-?	NR	3E-9		5.938	z score increase	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
1554	chr3	127109621	127109622	rs7610266	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	3q21.3	RP11-88I21.2	rs7610266-?	NR	1E-6		4.875	z score increase	Affymetrix, Illumina [7357080] (imputed)	N
1554	chr3	127112423	127112424	rs11714455	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q21.3	Intergenic	rs11714455-A	0.9665	1E-9		0.0384	[0.026-0.051] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1554	chr3	127117444	127117445	rs62262269	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q21.3	TPRA1	rs62262269-C	0.163	2E-12		0.0113	[0.0082-0.0144] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1554	chr3	127139400	127139401	rs11707501	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q21.3	Intergenic	rs11707501-T	0.8379	6E-11	(MTAG)	0.0204	[0.014-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1554	chr3	127139451	127139452	rs6784183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q21.3	Intergenic	rs6784183-A	0.8339	4E-9	(MTAG)	0.0142	[0.0095-0.0189] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1554	chr3	127139451	127139452	rs6784183	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q21.3	Intergenic	rs6784183-A	0.8341	1E-17	(MTAG)	0.0189	[0.015-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr3	127141829	127141830	rs34054495	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q21.3	NR	rs34054495-C	0.1567	8E-9				NR [9056863] (imputed)	N
1555	chr3	127141891	127141892	rs186679854	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	Intergenic	rs186679854-A	0.998	3E-6	(AA)	0.903	NR unit increase	Illumina [NR] (imputed)	N
1555	chr3	127143884	127143885	rs9755467	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3q21.3	NR	rs9755467-T	0.1565	5E-10		0.019007703	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1555	chr3	127144606	127144607	rs9289296	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3q21.3	RP11-88I21.2	rs9289296-?	NR	8E-9		0.01547775	[0.01-0.021] unit increase	NR [7306098]	N
1555	chr3	127144987	127144988	rs9289300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.3		rs9289300-T	0.8412	1E-17		0.0164	[0.013-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1555	chr3	127144987	127144988	rs9289300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.3	Intergenic	rs9289300-T	0.8412	3E-21	(MTAG)	0.0169	[0.013-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1555	chr3	127144992	127144993	rs9289301	25201988	Rietveld CA	2014-09-08	Proc Natl Acad Sci U S A	Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.	Educational attainment	106,736 European ancestry individuals	NA	3q21.3	intergenic	rs9289301-C	0.155	8E-7		0.031	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1555	chr3	127145163	127145164	rs7621362	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q21.3	RP11-88I21.2	rs7621362-T	NR	5E-9		0.023119275	[0.015-0.031] unit decrease	Affymetrix [NR]	N
1555	chr3	127148719	127148720	rs4974424	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	3q21.3		rs4974424-A	0.8265	1E-7		38.127964	z score increase	NR [6814003]	N
1555	chr3	127161688	127161689	rs11720236	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q21.3	RP11-59J16.1	rs11720236-T	NR	1E-9		6.088	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1555	chr3	127166396	127166397	rs28457046	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q21.3	TPRA1	rs28457046-C	0.4316	1E-8		0.0148285115	[0.0097-0.0199] unit increase	Affymetrix [~ 11515000] (imputed)	N
1555	chr3	127166396	127166397	rs28457046	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q21.3	TPRA1	rs28457046-C	0.4321	3E-11		0.015865145	[0.011-0.021] unit increase	Affymetrix [11515109] (imputed)	N
1555	chr3	127193426	127193427	rs2594220	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q21.3	TPRA1	rs2594220-T	0.168	1E-9		0.0096	[0.0065-0.0127] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1555	chr3	127218803	127218804	rs17282160	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3q21.3	chr3mb127	rs17282160-T	0.219140983	5E-6		0.1578	[0.09-0.225] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1555	chr3	127227165	127227166	rs189231963	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q21.3		rs189231963-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1555	chr3	127249653	127249654	rs146964939	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01471	rs146964939-?	NR	5E-10	(male)	3.00439	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1555	chr3	127249653	127249654	rs146964939	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01471	rs146964939-?	NR	4E-10		1.28928	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1555	chr3	127265515	127265516	rs12492351	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q21.3		rs12492351-A	NR	4E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1555	chr3	127268424	127268425	rs2720259	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q21.3		rs2720259-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1556	chr3	127292099	127292100	rs76039363	33539483	Li Z	2021-02-04	PLoS One	Bivariate genome-wide association study (GWAS) of body mass index and blood pressure phenotypes in northern Chinese twins.	Body mass index and systolic blood pressure (bivariate analysis)	274 Chinese ancestry dizygotic twins	NA	3q21.3	TPRA1	rs76039363-?	NR	8E-6				Illumina [7401356] (imputed)	N
1556	chr3	127305354	127305355	rs113761591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q21.3		rs113761591-T	NR	5E-10		0.0176	[0.012-0.023] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1556	chr3	127305354	127305355	rs113761591	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q21.3	KLF15, PLXNA1, TPRA1, MCM2, PODXL2, ABTB1, MGLL	rs113761591-?		9E-21				Affymetrix, Illumina [NR] (imputed)	N
1556	chr3	127305354	127305355	rs113761591	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q21.3	TPRA1	rs113761591-C	0.799746	2E-11		0.0160887	[0.011-0.021] unit increase	Affymetrix [NR] (imputed)	N
1556	chr3	127306461	127306462	rs79983121	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q21.3	TPRA1	rs79983121-C	0.799536	9E-10		0.0152723	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
1556	chr3	127314187	127314188	rs139963642	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3q21.3	TPRA1, MCM2	rs139963642-?	NR	2E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
1556	chr3	127320453	127320454	rs13077128	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3q21.3		rs13077128-C	0.06831	8E-6		0.059376	[0.033-0.085] unit increase	Affymetrix [15580782] (imputed)	N
1556	chr3	127332873	127332874	rs141743914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q21.3	MCM2	rs141743914-G	0.00701600000000002	7E-12		0.091589905	[0.065-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
1556	chr3	127340039	127340040	rs144122212	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	3q21.3	MCM2	rs144122212-T		2E-6	(AA)	7.692308	[1.32-50]	Affymetrix, Illumina [NR] (imputed)	N
1556	chr3	127347513	127347514	rs74741864	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs74741864-G	0.1847	3E-9	(EIF4G1)	0.02112	NR unit increase	Illumina [1671387] (imputed)	N
1556	chr3	127361104	127361105	rs543898509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q21.3		rs543898509-G	NR	1E-8		0.2119	[0.14-0.29] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1556	chr3	127361104	127361105	rs543898509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q21.3		rs543898509-G	0.003303	1E-8		0.211859	[0.14-0.29] unit decrease	Illumina [13476266] (imputed)	N
1556	chr3	127361104	127361105	rs543898509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q21.3		rs543898509-G	NR	5E-8		0.2063	[0.13-0.28] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1556	chr3	127361104	127361105	rs543898509	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q21.3		rs543898509-G	0.003281	5E-8		0.206285	[0.13-0.28] unit decrease	Illumina [13476299] (imputed)	N
1556	chr3	127394819	127394820	rs35703629	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3q21.3	NR	rs35703629-T		9E-9		0.08	[0.06-0.1] unit increase	NR [NR]	N
1556	chr3	127400780	127400781	rs1979527	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q21.3	NR	rs1979527-A	0.2	4E-9		0.013	[0.0085-0.0175] unit increase	Affymetrix [2446094] (imputed)	N
1556	chr3	127400780	127400781	rs1979527	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q21.3	NR	rs1979527-A	0.2	5E-8				Affymetrix [2446094] (imputed)	N
1557	chr3	127409940	127409941	rs782444	32117412	Boua PR	2020-02-07	Front Genet	Novel and Known Gene-Smoking Interactions With cIMT Identified as Potential Drivers for Atherosclerosis Risk in West-African Populations of the AWI-Gen Study.	Carotid intima media thickness x smoking interaction	465 West African ancestry male smokers, 1,311 West African ancestry male non-smokers	NA	3q21.3	MGLL	rs782444-T	NR	4E-6		4.596	NR z score increase	Illumina [7839440] (imputed)	N
1557	chr3	127427909	127427910	rs7630666	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q21.3	NR	rs7630666-A	0.378	2E-7		0.00579289	[0.0036-0.008] unit increase	NR [9732723] (imputed)	N
1557	chr3	127440618	127440619	rs11711251	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars triangularis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q21.3	MGLL	rs11711251-?		3E-7				Illumina [4322238] (imputed)	N
1557	chr3	127447468	127447469	rs114023838	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		MGLL	rs114023838-?	NR	6E-9	(male)	2.47989	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1557	chr3	127475625	127475626	rs7653663	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (dysmenorrhea)	3,573 Japanese ancestry female cases, 2,161 Japanese ancestry female controls	3,580 Japanese ancestry female cases, 2,034 Japanese ancestry female controls	3q21.3	NR	rs7653663-A	0.48623665	4E-6		0.13090697	[0.076-0.186] unit increase	Affymetrix [536506]	N
1557	chr3	127481317	127481318	rs664954	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,658 Korean ancestry females	NA	3q21.3		rs664954-T	0.04	1E-5		1.25	unit increase	Affymetrix [NR] (imputed)	N
1558	chr3	127617604	127617605	rs7634887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs7634887-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1559	chr3	127684747	127684748	rs17203687	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.3	KBTBD12	rs17203687-T	0.095907	9E-10		0.023410397	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1559	chr3	127693416	127693417	rs16839633	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3q21.3	NR	rs16839633-T	0.3218	2E-6		0.0253	[0.015-0.036] unit decrease	Illumina [up to 1980188] (imputed)	N
1559	chr3	127715195	127715196	rs17282209	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	Intergenic	rs17282209-T	0.883	1E-6		0.075	NR unit decrease	Illumina [NR] (imputed)	N
1559	chr3	127718953	127718954	rs6439106	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	3q21.3	intergenic	rs6439106-T	0.221	2E-7		0.409	[0.26-0.56] mg/dL increase	Illumina [622468]	N
1559	chr3	127730765	127730766	rs9824657	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine prolapse	10,647 European ancestry cases, 224,175 European ancestry controls, 423 East Asian ancestry cases, 82,338 East Asian ancestry controls	NA	3q21.3		rs9824657-C	NR	9E-10		0.1234	[0.084-0.163] unit decrease	Affymetrix, Illumina [25752093] (imputed)	N
1559	chr3	127742364	127742365	rs11712112	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q21.3	NR	rs11712112-A	NR	4E-6		1.08	[NR]	Illumina [7158791] (imputed)	N
1559	chr3	127746079	127746079	rs36096780	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Prostate cancer	10,792 European ancestry cases, 410,350 European ancestry controls	NA	3q21.3		rs36096780-A	NR	3E-8		1.085	NR	Affymetrix [7846216] (imputed)	N
1559	chr3	127791948	127791949	rs13064030	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q21.3		rs13064030-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1559	chr3	127794247	127794248	rs11709060	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q21.3		rs11709060-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1560	chr3	127809615	127809616	rs35724792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35724792-A	0.846	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127810444	127810445	rs34403909	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34403909-A	0.843	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127810737	127810738	rs13060453	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13060453-T	0.846	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127812036	127812037	rs13091198	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13091198-T	0.154	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127812791	127812792	rs55684215	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs55684215-A	0.157	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127813810	127813811	rs35515217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35515217-T	0.145	5E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127813810	127813811	rs35515217	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35515217-T	0.144	5E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127814076	127814077	rs36069551	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs36069551-A	0.154	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127814456	127814457	rs11714052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11714052-A	0.145	5E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127814456	127814457	rs11714052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11714052-A	0.144	5E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127815669	127815670	rs11709377	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q21.3	NR	rs11709377-A	0.119011	1E-19		0.027085	[0.021-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1560	chr3	127815669	127815670	rs11709377	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11709377-A	0.157	4E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127815926	127815927	rs36059338	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs36059338-C	0.846	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127816432	127816433	rs34228187	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34228187-T	0.836	2E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127817021	127817022	rs34562493	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34562493-T	0.153	3E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127817477	127817478	rs6787614	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6787614-A	0.156	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127817954	127817955	rs11720239	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11720239-A	0.673	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127818868	127818869	rs34709844	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34709844-A	0.153	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127820845	127820846	rs11715661	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11715661-T	0.153	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127822020	127822021	rs55777628	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs55777628-T	0.84	2E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127824048	127824049	rs11719079	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11719079-C	0.847	3E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127824777	127824778	rs67674204	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs67674204-A	0.841	4E-6		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127825077	127825078	rs34955225	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34955225-A	0.847	3E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127825305	127825306	rs35437840	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35437840-T	0.158	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127826578	127826579	rs35804055	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35804055-A	0.848	4E-7		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127828455	127828456	rs13082038	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13082038-C	0.844	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127828630	127828631	rs13062252	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13062252-T	0.832	8E-7		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127828967	127828968	rs60387553	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs60387553-A	0.166	2E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127829878	127829879	rs35421223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35421223-A	0.145	4E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127829878	127829879	rs35421223	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35421223-A	0.144	5E-7		0.063	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127831037	127831038	rs33998546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs33998546-T	0.839	2E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127833230	127833231	rs35947214	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35947214-C	0.842	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127833352	127833353	rs67940364	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs67940364-T	0.842	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127834694	127834695	rs6785535	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6785535-A	0.842	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127837507	127837508	rs34545799	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34545799-T	0.158	3E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127838629	127838630	rs11707462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11707462-C	0.161	2E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127840024	127840025	rs138573550	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs138573550-A	0.842	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127840446	127840447	rs112434347	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs112434347-C	0.846	3E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127841059	127841060	rs35531186	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35531186-T	0.153	2E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127841097	127841098	rs66987356	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs66987356-A	0.145	4E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127841097	127841098	rs66987356	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs66987356-A	0.144	5E-7		0.063	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127841743	127841744	rs34172752	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34172752-A	0.153	2E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127842219	127842220	rs60464856	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs60464856-A	0.836	2E-6		0.057	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127843377	127843378	rs6784159	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6784159-T	0.839	2E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127847297	127847298	rs56050323	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs56050323-A	0.161	2E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127847417	127847418	rs35145572	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35145572-C	0.836	2E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127848155	127848156	rs13095660	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13095660-T	0.158	3E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127848155	127848156	rs13095660	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13095660-T	0.156	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127848387	127848388	rs6788497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6788497-T	0.158	3E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127848387	127848388	rs6788497	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6788497-T	0.156	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127849066	127849067	rs6439116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6439116-A	0.843	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127849066	127849067	rs6439116	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6439116-A	0.844	7E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127849683	127849684	rs13059975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13059975-T	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127849683	127849684	rs13059975	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13059975-T	0.156	7E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127849743	127849744	rs34174370	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34174370-T	0.168	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127849743	127849744	rs34174370	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34174370-T	0.167	3E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127850075	127850076	rs11714619	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11714619-A	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127850075	127850076	rs11714619	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11714619-A	0.157	5E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127851560	127851561	rs6783253	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6783253-A	0.157	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127851560	127851561	rs6783253	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6783253-A	0.155	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127854526	127854527	rs35347185	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35347185-T	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127854526	127854527	rs35347185	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs35347185-T	0.157	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127855981	127855982	rs13069054	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs13069054-A	0.183	2E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127856399	127856400	rs6797834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6797834-T	0.157	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127856399	127856400	rs6797834	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6797834-T	0.155	5E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127857932	127857933	rs11709725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11709725-A	0.843	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127857932	127857933	rs11709725	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs11709725-A	0.845	5E-7		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127860478	127860479	rs34689870	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34689870-A	0.846	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127860478	127860479	rs34689870	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34689870-A	0.848	8E-7		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127861057	127861058	rs34817706	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34817706-A	0.156	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127861057	127861058	rs34817706	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34817706-A	0.155	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127862177	127862178	rs6800225	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6800225-T	0.156	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127862177	127862178	rs6800225	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs6800225-T	0.155	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127865558	127865559	rs2687723	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs2687723-C	0.843	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127865558	127865559	rs2687723	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs2687723-C	0.844	5E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127868274	127868275	rs73192978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs73192978-A	0.157	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127868274	127868275	rs73192978	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs73192978-A	0.156	5E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127868320	127868321	rs73192979	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs73192979-T	0.158	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127868320	127868321	rs73192979	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs73192979-T	0.156	5E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127870268	127870269	rs34749881	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	RUVBL1	rs34749881-T	0.168	3E-6		0.056	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127872505	127872506	rs11711710	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11711710-T	0.168	3E-6		0.056	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127872601	127872602	rs11719546	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11719546-A	0.834	3E-6		0.056	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127874911	127874912	rs11709066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11709066-A	0.159	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127874911	127874912	rs11709066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11709066-A	0.157	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127875373	127875374	rs11716941	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11716941-A	0.841	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127875373	127875374	rs11716941	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11716941-A	0.843	6E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127880225	127880226	rs67575175	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs67575175-T	0.84	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127880225	127880226	rs67575175	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs67575175-T	0.843	5E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127881567	127881568	rs13071740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13071740-T	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127881567	127881568	rs13071740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13071740-T	0.156	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127881612	127881613	rs2955117	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Gestational age at birth (maternal effect)	43,568 European ancestry mothers	8,643 European ancestry mothers	3q21.3	EEFSEC, RUVBL1, SEC61A1	rs2955117-A	0.286	9E-15		0.911	[NR] unit increase	Illumina [15635593] (imputed)	N
1560	chr3	127882603	127882604	rs13077913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13077913-A	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127882603	127882604	rs13077913	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13077913-A	0.156	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127882657	127882658	rs13077790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13077790-T	0.158	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127882657	127882658	rs13077790	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13077790-T	0.156	4E-7		0.062	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127886956	127886957	rs10934850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs10934850-A	0.676	4E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127886956	127886957	rs10934850	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs10934850-A	0.678	1E-6		0.06	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127888066	127888067	rs872267	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer (endometrioid histology)	8,758 European ancestry cases, 46,126 European ancestry controls	NA	3q21.3	EEFSEC, RUVBL1	rs872267-G	0.736735	9E-6		1.09	[1.05-1.14]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1560	chr3	127888066	127888067	rs872267	30093612	O'Mara TA	2018-08-09	Nat Commun	Identification of nine new susceptibility loci for endometrial cancer.	Endometrial cancer	12,906 European ancestry cases, 108,979 European ancestry controls	NA	3q21.3	RUVBL1, EEFSEC	rs872267-G	0.74	1E-6		1.09	[1.05-1.13]	Affymetrix, Illumina [~ 11700000] (imputed)	N
1560	chr3	127888174	127888175	rs34409786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs34409786-A	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127888174	127888175	rs34409786	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs34409786-A	0.839	9E-7		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127889541	127889542	rs13067650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13067650-A	0.153	4E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127889541	127889542	rs13067650	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs13067650-A	0.151	1E-6		0.06	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127891990	127891991	rs11706455	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11706455-A	0.167	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127891990	127891991	rs11706455	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11706455-A	0.164	2E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127892036	127892037	rs2999052	25108383	Geller F	2014-08-10	Nat Genet	Genome-wide association analyses identify variants in developmental genes associated with hypospadias.	Hypospadias	1,006 European ancestry male child cases, 2,390 European ancestry male child controls, 3,096 European ancestry female child controls	1,972 European ancestry male child cases, 1,401 European ancestry male child controls, 405 European ancestry female child controls, 6 European ancestry child controls	3q21.3	EEFSEC	rs2999052-T	0.738	1E-26		1.55	[NR]	Illumina [8207076] (imputed)	N
1560	chr3	127892850	127892851	rs2811474	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q21.3	NR	rs2811474-G	NR	9E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1560	chr3	127893563	127893564	rs11715394	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11715394-A	0.882	9E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127893563	127893564	rs11715394	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11715394-A	0.882	2E-7		0.069	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127895225	127895226	rs2687729	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q21.3		rs2687729-?	NR	1E-6		1.09727	[1.06-1.13]	NR [680312]	N
1560	chr3	127895225	127895226	rs2687729	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q21.3	EEFSEC	rs2687729-G	0.27	1E-10		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1560	chr3	127895225	127895226	rs2687729	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3q21.3	EEFSEC	rs2687729-G	0.27	1E-7		2.3	[1.52-3.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1560	chr3	127898500	127898501	rs2811476	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	3q21.3	NR	rs2811476-C	0.26310582	6E-6		1.0890101	[1.05-1.13]	Affymetrix, Illumina [20400945] (imputed)	N
1560	chr3	127898500	127898501	rs2811476	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q21.3	NR	rs2811476-C	NR	4E-39		1.102	[1.09-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
1560	chr3	127898500	127898501	rs2811476	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	3q21.3	NR	rs2811476-C	0.115	5E-7		1.138	[1.08-1.20]	Affymetrix, Illumina [10186136] (imputed)	N
1560	chr3	127912846	127912846	rs11412402	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	3q21.3	EEFSEC	rs11412402-?	0.474	5E-7		1.051	[1.03-1.07]	Affymetrix [9000000] (imputed)	N
1560	chr3	127912846	127912846	rs11412402	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q21.3	EEFSEC	rs11412402-?	NR	4E-14		1.057	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1560	chr3	127912987	127912988	rs2811511	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811511-A	0.162	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127912987	127912988	rs2811511	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811511-A	0.161	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127914852	127914853	rs2811484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs2811484-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1560	chr3	127915456	127915457	rs2687730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2687730-T	0.153	4E-6		0.011	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127915456	127915457	rs2687730	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2687730-T	0.151	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1560	chr3	127920074	127920075	rs2811486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811486-A	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127920074	127920075	rs2811486	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811486-A	0.839	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1560	chr3	127926253	127926254	rs2955126	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955126-A	0.162	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1560	chr3	127926253	127926254	rs2955126	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955126-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127929206	127929207	rs2955129	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955129-T	0.163	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127929206	127929207	rs2955129	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955129-T	0.162	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127931339	127931340	rs2999090	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q21.3	EEFSEC	rs2999090-A	0.881	7E-32		0.0433	[0.036-0.051] unit decrease	Affymetrix [19819130] (imputed)	N
1561	chr3	127931339	127931340	rs2999090	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q21.3	EEFSEC	rs2999090-A	0.881	2E-8		0.0203	[0.013-0.027] unit decrease	Affymetrix [19819130] (imputed)	N
1561	chr3	127931339	127931340	rs2999090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q21.3		rs2999090-?	NR	2E-43				NR [~ 8900000] (imputed)	N
1561	chr3	127931339	127931340	rs2999090	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999090-A	0.318	3E-6		0.013	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127931339	127931340	rs2999090	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999090-A	0.317	4E-7		0.067	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127935158	127935159	rs2999089	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999089-C	0.119	8E-7		0.013	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127935158	127935159	rs2999089	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999089-C	0.119	2E-7		0.069	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127937813	127937814	rs2955130	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955130-A	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127937813	127937814	rs2955130	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955130-A	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127938707	127938708	rs2811549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811549-T	0.162	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127938707	127938708	rs2811549	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811549-T	0.16	1E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127945321	127945322	rs2955133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955133-T	0.162	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127945321	127945322	rs2955133	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955133-T	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127954433	127954434	rs2999083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999083-T	0.838	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127954433	127954434	rs2999083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999083-T	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127954709	127954710	rs56397996	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs56397996-A	0.875243	1E-16				Affymetrix, Illumina [22063850] (imputed)	N
1561	chr3	127956707	127956708	rs2999080	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999080-A	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127956707	127956708	rs2999080	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999080-A	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127958413	127958414	rs2999077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999077-A	0.164	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127958413	127958414	rs2999077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999077-A	0.162	2E-6		0.057	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127958691	127958692	rs2999076	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3q21.3	NR	rs2999076-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1561	chr3	127958868	127958869	rs2955077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955077-A	0.162	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127958868	127958869	rs2955077	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955077-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127959185	127959186	rs2955078	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955078-A	0.162	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127959185	127959186	rs2955078	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955078-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127960298	127960299	rs2955081	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955081-A	0.163	7E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127960298	127960299	rs2955081	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955081-A	0.161	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	7E-6		0.89	[0.85-0.94]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	9E-9			[NR]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	7E-9		0.9	[0.86-0.93]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	9E-9			[NR]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	6E-9		0.89	[0.86-0.93]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	3q21.3	NR	rs2955083-T	0.12	6E-6		0.89	[0.84-0.94]	Affymetrix [9886854] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q21.3	EEFSEC	rs2955083-A	0.880692	5E-18		0.029551974	[0.023-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	3q21.3	EEFSEC, RUVBL1, SEC61A1	rs2955083-?	NR	4E-8				Affymetrix [up to 7325140] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3q21.3	EEFSEC	rs2955083-A	0.88	4E-15		1.13	[1.10-1.17]	Affymetrix, Illumina [6224355] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	28166215	Hobbs BD	2017-02-06	Nat Genet	Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis.	Chronic obstructive pulmonary disease	11,157 European ancestry cases, 36,699 European ancestry controls, 1,142 African American cases, 2,380 African American controls, 199 Korean ancestry cases, 6,741 Korean ancestry controls, 52 Hispanic cases, 548 Hispanic controls.	12,051 European ancestry cases, 11,111 European ancestry controls, 153 Korean ancestry cases, 205 Korean ancestry controls.	3q21.3	EEFSEC	rs2955083-A	0.88	4E-13		1.18	[1.13,1.24]	Affymetrix, Illumina [NR] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955083-A	0.882	6E-7		0.014	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127961177	127961178	rs2955083	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955083-A	0.882	2E-7		0.07	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127962756	127962757	rs2955085	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955085-A	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127962756	127962757	rs2955085	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955085-A	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127962875	127962876	rs2999072	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999072-C	0.838	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127962875	127962876	rs2999072	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2999072-C	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127963709	127963710	rs2955088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q21.3		rs2955088-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1561	chr3	127963709	127963710	rs2955088	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955088-T	0.838	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127963709	127963710	rs2955088	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955088-T	0.84	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127977865	127977866	rs2955096	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955096-A	0.162	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127977865	127977866	rs2955096	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955096-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127978504	127978505	rs2955097	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955097-C	0.808	3E-6		0.011	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127979500	127979501	rs2955098	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955098-T	0.164	6E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127979500	127979501	rs2955098	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2955098-T	0.162	7E-7		0.06	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127983494	127983495	rs2811544	31879980	German CA	2019-12-26	Genet Epidemiol	Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale.	Airflow obstruction in ever smokers	2,534 European ancestry unaffected individuals, 607 European ancestry stage 1 individuals, 1,424 European ancestry stage 2 individuals, 909 European ancestry stage 3 individuals, 487 European ancestry stage 4 individuals	NA	3q21.3	EEFSEC	rs2811544-?	NR	6E-7				NR [630860]	N
1561	chr3	127987866	127987867	rs2811400	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811400-A	0.838	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127987866	127987867	rs2811400	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811400-A	0.84	1E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127988918	127988919	rs2811536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811536-A	0.162	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127988918	127988919	rs2811536	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811536-A	0.16	1E-6		0.058	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127991176	127991177	rs2811414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811414-C	0.838	9E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127991176	127991177	rs2811414	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811414-C	0.84	1E-6		0.058	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	127991526	127991527	rs2811415	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	3q21.3	EEFSEC	rs2811415-G	0.84	6E-11		0.035	[0.025-0.045] unit decrease	Affymetrix [27624732] (imputed)	N
1561	chr3	127991937	127991938	rs2811416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811416-T	0.11	2E-6		0.015	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127991937	127991938	rs2811416	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811416-T	0.11	1E-6		0.074	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127993165	127993166	rs2811530	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811530-A	0.168	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127993165	127993166	rs2811530	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811530-A	0.166	4E-6		0.056	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127994435	127994436	rs2811528	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811528-A	0.162	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127994435	127994436	rs2811528	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811528-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127997911	127997912	rs2811381	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811381-A	0.162	8E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	127997911	127997912	rs2811381	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811381-A	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	127999429	127999430	rs2811525	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q21.3	EEFSEC	rs2811525-C	0.878624	6E-9		1.0548887	[1.03605658549925-1.07406305378248]	NR [9572556] (imputed)	N
1561	chr3	128002849	128002850	rs6765233	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs6765233-T	0.162	7E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128002849	128002850	rs6765233	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs6765233-T	0.16	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128013644	128013645	rs2811518	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q21.3	EEFSEC	rs2811518-A	0.88	5E-9				NR [> 9500000] (imputed)	N
1561	chr3	128015177	128015178	rs2811387	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	3q21.3	NR	rs2811387-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1561	chr3	128015177	128015178	rs2811387	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q21.3		rs2811387-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1561	chr3	128015177	128015178	rs2811387	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811387-T	0.838	5E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128015177	128015178	rs2811387	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811387-T	0.84	9E-7		0.06	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128023975	128023976	rs2811392	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811392-A	0.834	2E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128023975	128023976	rs2811392	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs2811392-A	0.836	1E-6		0.059	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128030342	128030343	rs56287882	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs56287882-A	0.158	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128030342	128030343	rs56287882	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs56287882-A	0.156	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128030473	128030474	rs73197383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73197383-T	0.157	1E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128030473	128030474	rs73197383	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73197383-T	0.155	6E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128038372	128038373	rs10934853	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q21.3		rs10934853-?	NR	7E-6		1.09014	[1.05-1.13]	NR [680312]	N
1561	chr3	128038372	128038373	rs10934853	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3q21.3	NR	rs10934853-A	NR	5E-8		1.09	NR	Affymetrix [at least 232408] (imputed)	N
1561	chr3	128038372	128038373	rs10934853	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q21.3	NR	rs10934853-A	0.28	1E-29		1.1	[1.09-1.12]	Illumina [20370935] (imputed)	N
1561	chr3	128038372	128038373	rs10934853	19767754	Gudmundsson J	2009-09-20	Nat Genet	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility.	Prostate cancer	Up to 1,968 European ancestry cases, 35,382 European ancestry controls	Up to 11,806 European ancestry cases, 12,387 European ancestry controls	3q21.3	intergenic	rs10934853-A	0.28	3E-10		1.12	[1.08-1.16]	Illumina [310520]	N
1561	chr3	128039894	128039895	rs11708733	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3q21.3	EEFSEC	rs11708733-?		2E-8				Illumina [5041948] (imputed)	N
1561	chr3	128041829	128041830	rs56328893	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs56328893-A	0.842	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128041829	128041830	rs56328893	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs56328893-A	0.844	7E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128042876	128042877	rs55925538	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs55925538-A	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128042876	128042877	rs55925538	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs55925538-A	0.163	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128043919	128043920	rs73197388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73197388-T	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128043919	128043920	rs73197388	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73197388-T	0.163	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128047008	128047009	rs11710627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11710627-C	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128047008	128047009	rs11710627	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11710627-C	0.163	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128047235	128047236	rs11710704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11710704-A	0.165	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128047235	128047236	rs11710704	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11710704-A	0.163	1E-6		0.059	NR unit increase	Illumina [NR] (imputed)	N
1561	chr3	128050613	128050614	rs11706304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11706304-A	0.843	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128050613	128050614	rs11706304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11706304-A	0.845	8E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1561	chr3	128056896	128056897	rs6798749	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs6798749-A	0.33	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1561	chr3	128056896	128056897	rs6798749	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs6798749-A	0.326	9E-7		0.06	NR unit increase	Illumina [NR] (imputed)	N
1562	chr3	128058610	128058610	rs201450565	28877031	Zhang G	2017-09-07	N Engl J Med	Genetic Associations with Gestational Duration and Spontaneous Preterm Birth.	Preterm birth (maternal effect)	3,331 European ancestry preterm birth mothers, 40,236 European ancestry term birth mothers	2,565 European ancestry preterm birth mothers, 6,034 European ancestry term birth mothers	3q21.3	EEFSEC, DNAJB8, GATA2	rs201450565-?	0.767	2E-12		1.2345679	[NR]	Illumina [15635593] (imputed)	N
1562	chr3	128058616	128058617	rs3849531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q21.3		rs3849531-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1562	chr3	128059292	128059293	rs73201462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73201462-A	0.843	1E-6		0.012	unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128059292	128059293	rs73201462	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs73201462-A	0.845	7E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128065465	128065466	rs61044849	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs61044849-T	0.157	9E-7		0.012	unit increase	Illumina [NR] (imputed)	N
1562	chr3	128065465	128065466	rs61044849	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs61044849-T	0.155	7E-7		0.061	NR unit increase	Illumina [NR] (imputed)	N
1562	chr3	128065814	128065815	rs57735707	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs57735707-T	0.843	8E-7		0.012	unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128065814	128065815	rs57735707	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs57735707-T	0.844	8E-7		0.061	NR unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128067274	128067275	rs11709611	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11709611-T	0.85	4E-7		0.013	unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128067274	128067275	rs11709611	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11709611-T	0.851	9E-7		0.062	NR unit decrease	Illumina [NR] (imputed)	N
1562	chr3	128067440	128067441	rs11721213	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	EEFSEC	rs11721213-T	0.203	2E-6		0.012	unit increase	Illumina [NR] (imputed)	N
1562	chr3	128075397	128075398	rs1735546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.3	EEFSEC	rs1735546-G	0.250685	1E-11		0.01764526	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr3	128096100	128096100	rs141238429	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q21.3		rs141238429-CT	NR	3E-8		0.0319	[0.021-0.043] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1562	chr3	128097495	128097496	rs2293947	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	3q21.3	C3orf27, DNAJB8, DNAJB8-AS1, EEFSEC, GATA2, KBTBD12, LOC90246, RPN1, RUVBL1, SEC61A1	rs2293947-?	NR	9E-10				Affymetrix [up to 7325140] (imputed)	N
1562	chr3	128104468	128104469	rs149272765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3q21.3		rs149272765-T	0.01697167	1E-27		0.92212635	[0.76-1.09] unit increase	Illumina [13406905] (imputed)	N
1562	chr3	128104468	128104469	rs149272765	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3q21.3		rs149272765-T	NR	1E-27		0.9221	[0.76-1.09] unit increase	Affymetrix, Illumina [25775424] (imputed)	N
1562	chr3	128104468	128104469	rs149272765	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	3q21.3		rs149272765-T	0.00952273	3E-19		2.8249998	[2.251365976-3.544792055]	Illumina [8919992] (imputed)	N
1562	chr3	128106266	128106267	rs2977562	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q21.3		rs2977562-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1562	chr3	128106266	128106267	rs2977562	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	3q21.3	RAB7A, ACAD9	rs2977562-?	NR	1E-17	(facial module 16)			Illumina [9478608] (imputed)	N
1562	chr3	128107019	128107020	rs7373685	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 18)	3,566 European ancestry individuals	4,680 European ancestry individuals	3q21.3		rs7373685-C	0.256482525	9E-49				Illumina [7417619] (imputed)	N
1562	chr3	128129039	128129040	rs59810826	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3	EEFSEC	rs59810826-C	0.075179	4E-12		0.02933481	[0.021-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1562	chr3	128133107	128133108	rs2811366	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q21.3		rs2811366-T	0.535054	1E-9		0.013654943	[0.0093-0.018] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr3	128134308	128134308	rs199585654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.3		rs199585654-GCTT	0.507712	4E-12		0.012888	[0.0088-0.017] unit decrease	Affymetrix [93095623] (imputed)	N
1562	chr3	128150769	128150770	rs2811403	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3q21.3	intergenic	rs2811403-G	0.513	1E-16		0.02894507	[0.022-0.036] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1562	chr3	128159635	128159636	rs1317885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q21.3	Intergenic	rs1317885-T	0.4798	7E-10	(MTAG)	0.0111	[0.0076-0.0146] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1562	chr3	128159635	128159636	rs1317885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q21.3	Intergenic	rs1317885-C	0.5202	2E-10		0.0124	[0.0085-0.0163] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1562	chr3	128168891	128168892	rs6771733	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q21.3		rs6771733-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1562	chr3	128169861	128169862	rs2659703	24823311	Guan W	2014-05-13	Circ Cardiovasc Genet	Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	8,631 European ancestry individuals	NA	3q21.3	DNAJB8	rs2659703-A	0.4	3E-6				Affymetrix, Illumina [~ 2500000] (imputed)	N
1562	chr3	128184415	128184416	rs2981027	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs2981027-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1562	chr3	128187233	128187234	rs76939711	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q21.3	NR	rs76939711-A	NR	3E-6		1.2	[NR]	Illumina [7158791] (imputed)	N
1563	chr3	128189390	128189391	rs76594121	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q21.3	NR	rs76594121-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1563	chr3	128189390	128189391	rs76594121	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q21.3		rs76594121-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1563	chr3	128189390	128189391	rs76594121	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q21.3	NA	rs76594121-T	0.9547	2E-9		0.0284	[0.019-0.038] unit increase	NR [~ 27400000] (imputed)	N
1563	chr3	128191775	128191776	rs6808807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q21.3		rs6808807-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1563	chr3	128198103	128198104	rs2713579	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3	GATA2	rs2713579-A	0.654541	8E-14		0.018597014	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128198103	128198104	rs2713579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	3q21.3	GATA2	rs2713579-A	0.6548	2E-11		0.02554502	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128198103	128198104	rs2713579	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3q21.3	GATA2	rs2713579-A	0.6549	3E-16		0.03089935	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128200458	128200459	rs2713604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q21.3	GATA2	rs2713604-C	0.660361	3E-18		0.021434074	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128200458	128200459	rs2713604	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q21.3	GATA2	rs2713604-C	0.660366	5E-9		0.015944539	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128201888	128201889	rs62270945	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.3	GATA2	rs62270945-T	0.028149	1E-13		0.05035244	[0.037-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128201888	128201889	rs62270945	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q21.3	GATA2	rs62270945-T	0.027	2E-13		0.6687	[0.49-0.85] mmHg increase	Affymetrix [NR] (imputed)	N
1563	chr3	128201888	128201889	rs62270945	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Pulse pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3q21.3	GATA2	rs62270945-T	0.03	2E-9		0.607	[0.41-0.8] unit increase	Affymetrix [~ 9800000] (imputed)	N
1563	chr3	128201888	128201889	rs62270945	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.3	GATA2	rs62270945-C		1E-6		0.608	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1563	chr3	128201888	128201889	rs62270945	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q21.3	GATA2	rs62270945-C		2E-10		0.534	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1563	chr3	128202942	128202943	rs55914222	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3q21.3		rs55914222-G	0.97222	4E-17		0.170267	[0.13-0.21] increase	Affymetrix [NR]	N
1563	chr3	128202942	128202943	rs55914222	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3q21.3		rs55914222-G	0.972017	1E-14		0.169407	[0.13-0.21] increase	Affymetrix [NR]	N
1563	chr3	128202942	128202943	rs55914222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q21.3		rs55914222-C	NR	3E-8		0.0376	[0.024-0.051] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1563	chr3	128202942	128202943	rs55914222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q21.3		rs55914222-C	NR	5E-14		0.0482	[0.036-0.061] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
1563	chr3	128202942	128202943	rs55914222	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q21.3	GATA2	rs55914222-C	0.3828	9E-9		0.5104	[0.34-0.68] mmHg decrease	Affymetrix [NR] (imputed)	N
1563	chr3	128203034	128203035	rs2713602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q21.3	GATA2	rs2713602-G	0.581318	1E-37		0.029110398	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128203034	128203035	rs2713602	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs2713602-G	0.58636	9E-16				Affymetrix, Illumina [23472807] (imputed)	N
1563	chr3	128203493	128203494	rs202183059	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q21.3	NR	rs202183059-D	0.370186	1E-17		0.018293	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1563	chr3	128203494	128203495	rs11356859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q21.3		rs11356859-A	NR	1E-12		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1563	chr3	128203494	128203495	rs11356859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q21.3	GATA2	rs11356859-A	0.369754	2E-11		0.017640471	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128203494	128203495	rs11356859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q21.3	GATA2	rs11356859-A	0.369768	6E-17		0.01931425	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128204227	128204228	rs72983369	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs72983369-G	0.977	9E-12				Affymetrix [10369434] (imputed)	N
1563	chr3	128210549	128210550	rs11712335	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs11712335-T	0.73	4E-22				Affymetrix [10369434] (imputed)	N
1563	chr3	128213343	128213344	rs75618320	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	3q21.3		rs75618320-A	NR	2E-7		0.89518213	[0.858409614419123-0.933529851918226]	Illumina [8919992] (imputed)	N
1563	chr3	128213993	128213994	rs35006112	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q21.3	NR	rs35006112-G	NR	4E-21		1.083	[1.06-1.10]	Affymetrix, Illumina [29235255] (imputed)	N
1563	chr3	128213993	128213994	rs35006112	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	3q21.3	NR	rs35006112-G	0.631	4E-11		1.134	[1.09-1.18]	Affymetrix, Illumina [10186136] (imputed)	N
1563	chr3	128217498	128217499	rs73862213	31562322	Takata R	2019-09-27	Nat Commun	12 new susceptibility loci for prostate cancer identified by genome-wide association study in Japanese population.	Prostate cancer	5,088 Japanese ancestry cases, 10,682 Japanese ancestry controls	4,818 Japanese ancestry cases, 73,261 Japanese ancestry controls	3q21.3	GATA2	rs73862213-G	0.923	6E-23		1.3140606	NR	Illumina [7742602] (imputed)	N
1563	chr3	128218409	128218410	rs7629791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3q21.3		rs7629791-G	0.524	3E-24				Affymetrix [10369434] (imputed)	N
1563	chr3	128218409	128218410	rs7629791	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3q21.3		rs7629791-G	0.524	8E-12				Affymetrix [10369434] (imputed)	N
1563	chr3	128218409	128218410	rs7629791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3q21.3	RP11-475N22.4	rs7629791-A	0.475972	2E-9		0.013713834	[0.0092-0.0182] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128220223	128220224	rs7635966	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (responsive search score)	128 Han Chinese ancestry cases	NA	3q21.3	NR	rs7635966-?	NR	8E-6		5.968	[3.45-8.48] unit decrease	Illumina [498648]	N
1563	chr3	128220223	128220224	rs7635966	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (number of eye fixations)	128 Han Chinese ancestry cases	NA	3q21.3	NR	rs7635966-?	NR	5E-6		16.91	[9.94-23.88] unit decrease	Illumina [498648]	N
1563	chr3	128224064	128224065	rs62270949	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.3	RP11-475N22.4	rs62270949-T	0.037006	2E-12		0.042367168	[0.031-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128226450	128226451	rs72983394	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs72983394-C	0.023017	4E-11		0.049209643	[0.035-0.064] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128229323	128229324	rs79070372	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	3q21.3	NR	rs79070372-A	0.1109	6E-9		0.5054	[0.34-0.68] unit increase	Illumina [5932107] (imputed)	N
1563	chr3	128238221	128238222	rs7614922	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	3q21.3	NR	rs7614922-C	0.14	4E-12		0.14	[0.1-0.18] unit increase	Affymetrix [10972371] (imputed)	N
1563	chr3	128252312	128252313	rs56325233	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3	TMED10P2	rs56325233-G	0.252074	1E-12		0.018977026	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128260228	128260229	rs115510291	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs115510291-T	0.921	4E-22				Affymetrix [10369434] (imputed)	N
1563	chr3	128260549	128260550	rs4857855	19198610	Gudbjartsson DF	2009-02-08	Nat Genet	Sequence variants affecting eosinophil numbers associate with asthma and myocardial infarction.	Eosinophil counts	9,392 European ancestry individuals	12,118 European ancestry individuals, 5,212 East Asian ancestry individuals	3q21.3	GATA2	rs4857855-T	0.82	9E-17	(EA)	9.4	[7.2-11.6] % standard unit increase	Illumina [312179]	N
1563	chr3	128260818	128260819	rs13325550	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	3q21.3		rs13325550-C	NR	3E-16		0.1483	[0.11-0.18] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1563	chr3	128282696	128282697	rs6806253	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Pit-and-Fissure caries	996 European ancestry individuals		3q21.3	NR	rs6806253-A	0.8295	6E-6		1.5595	[NR] unit decrease	Illumina [1200000] (imputed)	N
1563	chr3	128290207	128290208	rs2713589	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs2713589-C	0.867	1E-21				Affymetrix [10369434] (imputed)	N
1563	chr3	128294110	128294111	rs147412900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q21.3	C3orf27	rs147412900-A	0.02384	1E-16		0.06099745	[0.047-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128294110	128294111	rs147412900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q21.3	C3orf27	rs147412900-A	0.023843	7E-10		0.045971196	[0.031-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128294110	128294111	rs147412900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q21.3		rs147412900-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1563	chr3	128296222	128296223	rs3795239	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3q21.3		rs3795239-T	0.562	1E-24				Affymetrix [10369434] (imputed)	N
1563	chr3	128296272	128296273	rs2465283	28031487	Guo MH	2016-12-28	Proc Natl Acad Sci U S A	Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms.	Basophil count	5,578 European ancestry individuals	NA	3q21.3	GATA2	rs2465283-?	0.101	1E-11		0.0028	1,000/?L decrease	NR [16536512] (imputed)	N
1563	chr3	128296505	128296506	rs3829729	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3q21.3	C3orf27	rs3829729-T	0.569352	1E-12		0.01711497	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (monocyte)	21,347 Hispanic or Latin American individuals	NA	3q21.3		rs9880192-C	0.7432	1E-8		0.0744	[0.049-0.1] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.3	C3orf27	rs9880192-C	0.412892	2E-14		0.017535653	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	3q21.3		rs9880192-C	0.414208	2E-12		0.0025196	[0.0018-0.0032] unit decrease	Affymetrix [10829469] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte-lymphocyte ratio	5,892 Dutch ancestry individuals	NA	3q21.3	C3orf27	rs9880192-?	NR	6E-7				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	28193307	Lin BD	2017-02-14	Twin Res Hum Genet	Heritability and GWAS Studies for Monocyte-Lymphocyte Ratio.	Monocyte count	5,892 Dutch ancestry individuals	NA	3q21.3	c3orf27	rs9880192-?	NR	1E-7				Affymetrix, Illumina, Perlegen [5987253] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q21.3	C3orf27	rs9880192-C	0.411	2E-29		0.04141508	[0.034-0.049] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q21.3	C3orf27	rs9880192-C	0.411	6E-34		0.04439316	[0.037-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q21.3	C3orf27	rs9880192-C	0.411	3E-33		0.04410039	[0.037-0.051] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q21.3	C3orf27	rs9880192-C	0.4111	3E-26		0.03872916	[0.032-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	25096241	Keller MF	2014-08-05	Hum Mol Genet	Trans-ethnic meta-analysis of white blood cell phenotypes.	Monocyte count	9,810 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,369 African American individuals	NA	3q21.3	C3orf27	rs9880192-C	0.441	1E-8	(EA)	0.028	[0.018-0.038] unit decrease	Illumina [NR] (imputed)	N
1563	chr3	128297568	128297569	rs9880192	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	3q21.3	RPN1, LOC90246, C3orf27, GATA2	rs9880192-C		6E-13	(Monocytes)	0.028	[0.020-0.036] unit decrease	Affymetrix, Illumina [> 2400000] (imputed)	N
1563	chr3	128298019	128298021	rs10610520	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3	C3orf27	rs10610520-A	0.520424	3E-14		0.020920128	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128300997	128300998	rs2713571	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3q21.3		rs2713571-C	0.703	1E-101				Affymetrix [10369434] (imputed)	N
1563	chr3	128301084	128301085	rs113269528	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q21.3	intergenic	rs113269528-C	0.075	1E-14		0.05246154	[0.039-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128301084	128301085	rs113269528	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q21.3	intergenic	rs113269528-C	0.075	3E-12		0.04771074	[0.034-0.061] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128301389	128301390	rs2734031	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3q21.3		rs2734031-T	0.09	6E-25				Affymetrix [10369434] (imputed)	N
1563	chr3	128301389	128301390	rs2734031	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs2734031-C	0.9091818	9E-24		0.040979158	[0.033-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128301389	128301390	rs2734031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs2734031-C	0.874243	2E-91				Affymetrix, Illumina [23114412] (imputed)	N
1563	chr3	128301389	128301390	rs2734031	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q21.3	NR	rs2734031-C	0.907968	4E-91		0.067521	[0.061-0.074] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1563	chr3	128301389	128301390	rs2734031	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3q21.3	intergenic	rs2734031-C	0.9094	5E-23		0.06230471	[0.05-0.075] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128305301	128305302	rs2010054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q21.3	intergenic	rs2010054-G	0.5947	4E-123		0.08513893	[0.078-0.092] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128305301	128305302	rs2010054	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3q21.3	intergenic	rs2010054-G	0.5947	7E-93		0.07399142	[0.067-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128305340	128305341	rs4045811	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q21.3		rs4045811-T	NR	1E-222		0.0678	[0.064-0.072] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1563	chr3	128306417	128306418	rs6772849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q21.3	intergenic	rs6772849-C	0.3537	3E-112		0.08361036	[0.076-0.091] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128306417	128306418	rs6772849	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3q21.3	intergenic	rs6772849-C	0.3537	2E-93		0.07626315	[0.069-0.084] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PAPPA	5,363 Icelandic ancestry individuals	NA	3q21.3		rs13089722-A	0.1294	3E-14		0.20153	[0.15-0.25] unit decrease	Illumina [7506463] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pappalysin-1 levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs13089722-A	0.12	1E-23		0.1512	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q21.3	NR	rs13089722-A	0.107011	5E-21		0.033833843	[0.027-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs13089722-A	0.142967	4E-476				Affymetrix, Illumina [19872809] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs13089722-A	0.141035	9E-332				Affymetrix, Illumina [19905671] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs13089722-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1563	chr3	128306756	128306757	rs13089722	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (eosinophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3q21.3	GATA2	rs13089722-G	0.827	5E-11		0.0147	[0.01-0.019] unit increase	Illumina [27887661] (imputed)	N
1563	chr3	128306893	128306894	rs6775731	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Resistin levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs6775731-T	0.3	5E-10		0.0564	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1563	chr3	128308883	128308884	rs2734037	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3		rs2734037-T	0.351935	2E-129		0.06248145	[0.057-0.068] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128308883	128308884	rs2734037	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	3q21.3	NR	rs2734037-C	0.57623	3E-19		0.043223	[0.034-0.053] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
1563	chr3	128308883	128308884	rs2734037	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	3q21.3	LINC01565, RPN1	rs2734037-?	NR	4E-19		0.05168	[0.04-0.063] unit increase novel	Illumina [6108953] (imputed)	N
1563	chr3	128310106	128310107	rs62273237	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs62273237-C	0.59396	2E-40		0.040829454	[0.035-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128310588	128310589	rs4286447	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3q21.3	intergenic	rs4286447-T	0.3527	1E-79		0.07045	[0.063-0.078] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128311066	128311067	rs9289330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs9289330-G	0.375066	3E-82		0.04574786	[0.041-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128311066	128311067	rs9289330	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q21.3		rs9289330-G	0.375072	3E-70		0.042179126	[0.038-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128311403	128311404	rs7428052	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.3		rs7428052-C	0.701226	7E-11		0.015899055	[0.011-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128312068	128312069	rs9849126	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs9849126-T	0.625	8E-125				Affymetrix [10369434] (imputed)	N
1563	chr3	128312068	128312069	rs9849126	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs9849126-C	0.374947	3E-52		0.050852332	[0.044-0.057] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128315724	128315725	rs2335235	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3q21.3	NR	rs2335235-C	0.107846	5E-157		0.087901	[0.081-0.094] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3q21.3		rs4328821-A	0.893	1E-101				Affymetrix [10369434] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (eosinophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3q21.3	NR	rs4328821-A	0.82	1E-8		0.06	[0.038-0.082] unit increase	Illumina [27887661] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (basophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3q21.3	NR	rs4328821-A	0.82	1E-20		0.066	[0.052-0.08] unit increase	Illumina [27887661] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1076	5E-138		0.1436063	[0.13-0.15] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of white cells	171,542 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1077	5E-50		0.08527041	[0.074-0.097] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1077	2E-184		0.1665542	[0.16-0.18] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1075	2E-145		0.147194	[0.14-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1077	6E-153		0.1515107	[0.14-0.16] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q21.3	intergenic	rs4328821-G	0.1075	4E-115		0.1308034	[0.12-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	21738480	Nalls MA	2011-07-01	PLoS Genet	Multiple loci are associated with white blood cell phenotypes.	White blood cell count	19,509 European ancestry individuals	11,823 European ancestry individuals	3q21.3	RPN1, LOC90246, C3orf27	rs4328821-A		4E-13	(Basophils)	0.01	[0.0073-0.0127] unit increase	Affymetrix, Illumina [> 2400000] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	3q21.3	GATA2	rs4328821-A	0.66	5E-40	(basophil count)	0.161	[0.14-0.18] unit increase	Illumina [2178645] (imputed)	N
1563	chr3	128316434	128316435	rs4328821	21738478	Okada Y	2011-06-30	PLoS Genet	Identification of nine novel loci associated with white blood cell subtypes in a Japanese population.	White blood cell types	8,794 Japanese ancestry individuals	5,998 Japanese ancestry individuals	3q21.3	GATA2	rs4328821-A	0.66	3E-17	(eosinophil count)	0.103	[0.08-0.12] unit increase	Illumina [2178645] (imputed)	N
1563	chr3	128316889	128316890	rs2712431	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monocyte chemoattractant protein-1 levels	8,293 Finnish ancestry individuals	NA	3q21.3	NR	rs2712431-C		5E-6		0.0787	[0.045-0.112] SD units increase	NR [10700000] (imputed)	N
1563	chr3	128316938	128316939	rs9864772	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	3q21.3	GATA2	rs9864772-G	0.6075	3E-7		1.15	1.09-1.21	Affymetrix [6845584] (imputed)	N
1563	chr3	128317272	128317273	rs2713573	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	3q21.3		rs2713573-T	0.851991	2E-8		0.0270154	[0.018-0.036] unit increase	Illumina [13479091] (imputed)	N
1563	chr3	128317272	128317273	rs2713573	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.3		rs2713573-T	0.687451	9E-12		0.016339524	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317272	128317273	rs2713573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs2713573-T	0.719776	1E-37				Affymetrix, Illumina [24649327] (imputed)	N
1563	chr3	128317272	128317273	rs2713573	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs2713573-C	0.312122	1E-12				Affymetrix, Illumina [17210439] (imputed)	N
1563	chr3	128317977	128317978	rs191451841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs191451841-T	0.00614099999999995	3E-15		0.117752574	[0.089-0.147] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317977	128317978	rs191451841	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q21.3		rs191451841-T	0.00614400000000004	3E-13		0.10834369	[0.079-0.138] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q21.3		rs6782812-A	NR	1E-291		0.0891	[0.084-0.094] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (eosinophil)	21,347 Hispanic or Latin American individuals	NA	3q21.3		rs6782812-A	0.1672	6E-22		0.1463	[0.12-0.18] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	White blood cell count (basophil)	21,347 Hispanic or Latin American individuals	NA	3q21.3		rs6782812-A	0.167	1E-17		0.1367	[0.11-0.17] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893006	8E-127		0.086753204	[0.08-0.094] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893013	3E-71		0.065532535	[0.058-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893052	2E-467		0.17199972	[0.16-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893043	2E-374		0.15386826	[0.15-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893069	6E-84		0.074675746	[0.067-0.082] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3q21.3		rs6782812-A	0.893054	1E-47		0.05652043	[0.049-0.064] unit increase	Affymetrix [93095623] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	8,142 South Asian ancestry individuals	NA	3q21.3	NR	rs6782812-G	0.212286	4E-18		0.166725	[0.13-0.2] SD units decrease	Affymetrix, Illumina [28445528] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q21.3	NR	rs6782812-A	0.892354	1E-382		0.133851	[0.13-0.14] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	81,042 East Asian ancestry individuals	NA	3q21.3	NR	rs6782812-G	0.339286	7E-179		0.15041	[0.14-0.16] SD units decrease	Affymetrix, Illumina [16286709] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	3q21.3	LINC01565, RPN1	rs6782812-?	NR	2E-123		0.1417	[0.13-0.15] unit increase novel	Illumina [6108953] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	28158719	Jain D	2017-02-01	Hum Mol Genet	Genome-wide association of white blood cell counts in Hispanic/Latino Americans: the Hispanic Community Health Study/Study of Latinos.	White blood cell count (basophil)	up to 11,809 Hispanic/Latino American individuals	up to 7,200 Hispanic/Latino American individuals	3q21.3	GATA2	rs6782812-G	0.173	1E-26		0.0671	[0.055-0.079] unit decrease	Illumina [27887661] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count (basophil)	171,846 European ancestry individuals	NA	3q21.3	intergenic	rs6782812-A	0.893	1E-96		0.1181745	[0.11-0.13] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3q21.3	intergenic	rs6782812-A	0.893	7E-136		0.1395398	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1563	chr3	128317996	128317997	rs6782812	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3q21.3	intergenic	rs6782812-A	0.8929	3E-139		0.1424753	[0.13-0.15] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128319846	128319846	rs142410722	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q21.3	intergenic	rs142410722-TC	0.0718	8E-12		0.04791145	[0.034-0.062] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	93,063 East Asian ancestry individuals	NA	3q21.3		rs7646596-G	0.66106	8E-94		0.0965241	[0.087-0.106] unit increase	Illumina [13470073] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	3q21.3		rs7646596-G	0.661139	3E-168		0.13184	[0.12-0.14] unit increase	Illumina [13469940] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	349,856 European ancestry individuals, 91,908 East Asian ancestry individuals	NA	3q21.3		rs7646596-G	NR	7E-125		0.0644	[0.059-0.07] unit increase	Affymetrix, Illumina [20529536] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q21.3		rs7646596-G	0.893359	1E-9		0.02214712	[0.015-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	86,890 East Asian ancestry individuals	NA	3q21.3	NR	rs7646596-T	0.338112	3E-84		0.099773	[0.09-0.11] SD units decrease	Affymetrix, Illumina [16279099] (imputed)	N
1564	chr3	128320344	128320345	rs7646596	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Eosinophil counts	62,076 Japanese ancestry individuals	NA	3q21.3	LINC01565, RPN1	rs7646596-?	NR	3E-56		0.09638	[0.084-0.108] unit increase novel	Illumina [6108953] (imputed)	N
1564	chr3	128321225	128321226	rs9811380	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	82,810 East Asian ancestry individuals	NA	3q21.3		rs9811380-G	0.147028	2E-9		0.0395264	[0.027-0.052] unit decrease	Illumina [13467171] (imputed)	N
1564	chr3	128321225	128321226	rs9811380	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Monocyte chemoattractant protein-1 levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs9811380-A	0.71	1E-8		0.0521	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q21.3		rs11359909-A	NR	2E-47		0.0486	[0.042-0.055] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q21.3	NR	rs11359909-A	0.893748	4E-9		0.021520173	[0.014-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q21.3	NR	rs11359909-A	0.893748	7E-9		0.021138895	[0.014-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q21.3		rs11359909-A	0.893726	5E-12		0.025097314	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q21.3		rs11359909-A	0.893722	8E-12		0.02488231	[0.018-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3q21.3	intergenic	rs11359909-A	0.8935	1E-13		0.04348204	[0.032-0.055] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3q21.3	intergenic	rs11359909-A	0.8934	3E-25		0.06062021	[0.049-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	3q21.3	intergenic	rs11359909-A	0.8934	1E-32		0.06945729	[0.058-0.081] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	3q21.3	intergenic	rs11359909-A	0.8934	1E-34		0.07165217	[0.06-0.083] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128321873	128321874	rs11359909	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3q21.3	intergenic	rs11359909-A	0.8935	5E-21		0.05511717	[0.044-0.067] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128322146	128322147	rs1806522	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	3q21.3		rs1806522-T	0.399326	1E-23		0.0463425	[0.037-0.055] unit increase	Illumina [13471440] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3q21.3		rs112097551-A	NR	1E-10		1.98	[1.37-2.59] unit increase	Illumina [97506867]	N
1564	chr3	128322616	128322617	rs112097551	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3q21.3		rs112097551-A	0.398	4E-10		0.78	[0.54-1.02] unit increase	Illumina [94681438]	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3		rs112097551-A	0.001305	7E-16		0.2627794	[0.2-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q21.3		rs112097551-A	0.00130699999999995	2E-9		0.1973832	[0.13-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.3		rs112097551-A	0.00130300000000005	1E-17		0.266766	[0.21-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q21.3		rs112097551-A	0.00130300000000005	3E-16		0.26519445	[0.2-0.33] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q21.3		rs112097551-A	0.00130600000000003	2E-15		0.25795135	[0.19-0.32] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q21.3		rs112097551-A	0.00130699999999995	1E-11		0.2196529	[0.16-0.28] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs112097551-G	0.998505	3E-13				Affymetrix, Illumina [24332387] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs112097551-G	0.998504	8E-21				Affymetrix, Illumina [24246363] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q21.3	NR	rs112097551-G	0.99865	4E-19		0.246137	[0.19-0.3] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs112097551-G	0.9985	1E-18				Affymetrix, Illumina [20825802] (imputed)	N
1564	chr3	128322616	128322617	rs112097551	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q21.3	NR	rs112097551-G	0.998653	6E-18		0.247083	[0.19-0.3] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs6782228-C	0.267755	2E-23		0.026278224	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q21.3	NR	rs6782228-C	0.267192	2E-368		0.086949	[0.083-0.091] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2679	1E-14		0.03151812	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2678	9E-15		0.03159961	[0.024-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2679	2E-16		0.03364508	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2678	6E-17		0.03407596	[0.026-0.042] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2679	2E-22		0.03977305	[0.032-0.048] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2679	1E-103		0.08761663	[0.08-0.096] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2679	3E-23		0.04021163	[0.032-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323423	128323424	rs6782228	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3q21.3	intergenic	rs6782228-C	0.2678	3E-14		0.03102483	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128323903	128323904	rs116026278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3		rs116026278-T	0.014324	3E-13		0.070943035	[0.052-0.09] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128323903	128323904	rs116026278	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3		rs116026278-T	0.0143219999999999	2E-17		0.08014782	[0.062-0.099] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128325439	128325440	rs79955866	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	334,944 European ancestry, NR ancestry individuals	NA	3q21.3		rs79955866-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1564	chr3	128325762	128325763	rs34762068	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3q21.3		rs34762068-G	0.727	2E-21				Affymetrix [10369434] (imputed)	N
1564	chr3	128326806	128326807	rs2712407	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3q21.3		rs2712407-C	0.767	3E-27				Affymetrix [10369434] (imputed)	N
1564	chr3	128326806	128326807	rs2712407	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	3q21.3	NR	rs2712407-?	NR	2E-17				Affymetrix, Illumina [6211246] (imputed)	N
1564	chr3	128329792	128329793	rs2253125	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q21.3	C3orf27, RPN1	rs2253125-T	0.187086	5E-23	(1-methylhistamine)	0.283	[0.23-0.34] unit decrease	Illumina [13039987] (imputed)	N
1564	chr3	128330525	128330526	rs67445542	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3q21.3		rs67445542-C	0.613147	6E-16		0.020087859	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128331869	128331870	rs9841161	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RPN1	5,361 Icelandic ancestry individuals	NA	3q21.3		rs9841161-A	0.4099	3E-29		0.210839	[0.17-0.25] unit increase	Illumina [7506463] (imputed)	N
1564	chr3	128331878	128331879	rs2811487	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	3q21.3	LINC01565, RPN1	rs2811487-A	0.36	7E-10		0.027	NR unit increase	Illumina [9591901] (imputed)	N
1564	chr3	128331878	128331879	rs2811487	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	3q21.3	LINC01565, RPN1	rs2811487-G	0.77	3E-12		0.01	unit increase	NR [NR]	N
1564	chr3	128336297	128336298	rs2492286	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	3q21.3	NR	rs2492286-T	0.1519	5E-11		0.2808	[0.2-0.36] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
1564	chr3	128336297	128336298	rs2492286	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q21.3	RPN1	rs2492286-T	0.1543	4E-18		0.04314615	[0.033-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128338599	128338600	rs2712381	23314186	Crosslin DR	2013-03-03	Hum Mol Genet	Genetic variation associated with circulating monocyte count in the eMERGE Network.	Monocyte count	9,849 European ancestry individuals, 894 African ancestry individuals, 271 individuals	NA	3q21.3	RPN1	rs2712381-A	0.40	2E-16		0.23	unit decrease	Illumina [NR]	N
1564	chr3	128341717	128341718	rs2335236	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	13,471 African American or Afro-Caribbean and African ancestry individuals	NA	3q21.3	NR	rs2335236-C	0.419746	1E-9		0.075448	[0.051-0.1] SD units decrease	Affymetrix, Illumina [36452625] (imputed)	N
1564	chr3	128343635	128343636	rs2712418	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q21.3		rs2712418-A	NR	2E-9		0.0114	[0.0077-0.0151] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1564	chr3	128344785	128344786	rs1126828	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	6,148 African American individuals	NA	3q21.3	NR	rs1126828-G	0.8505	9E-14		0.9645	[0.71-1.22] unit decrease	Affymetrix, Illumina [12989965] (imputed)	N
1564	chr3	128345178	128345179	rs2712417	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q21.3	RPN1	rs2712417-G	0.618	3E-44	(Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, RPN1.10490.3.3)	0.34	[0.3-0.38] unit decrease	Affymetrix [10572788] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs55683935-T	0.961	3E-31				Affymetrix [10369434] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q21.3	RPN1	rs55683935-G	0.0387729999999999	5E-18		0.051576585	[0.04-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3	RPN1	rs55683935-G	0.0387729999999999	2E-17		0.051590264	[0.04-0.063] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.3	RPN1	rs55683935-G	0.038732	2E-10		0.0323982	[0.022-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q21.3	RPN1	rs55683935-G	0.0388	9E-33		0.1097044	[0.092-0.128] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128349375	128349376	rs55683935	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3q21.3	RPN1	rs55683935-G	0.0388	4E-39		0.1206489	[0.1-0.14] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128350037	128350038	rs6789546	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs6789546-T	0.237978	8E-369				Affymetrix, Illumina [23467995] (imputed)	N
1564	chr3	128350683	128350684	rs4857914	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.3	RPN1	rs4857914-T	0.359068	2E-12		0.016567113	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128353780	128353781	rs79348461	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q21.3		rs79348461-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1564	chr3	128366050	128366051	rs2712412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q21.3		rs2712412-T	NR	3E-10		0.0138	[0.0095-0.0181] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1564	chr3	128366050	128366051	rs2712412	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q21.3		rs2712412-T	NR	2E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1564	chr3	128366050	128366051	rs2712412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q21.3	RPN1	rs2712412-T	0.256137	5E-11		0.0144916	[0.0099-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128366050	128366051	rs2712412	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q21.3	RPN1	rs2712412-T	0.256155	7E-13		0.01817673	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1564	chr3	128372486	128372487	rs6764912	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs6764912-G	0.933	5E-23				Affymetrix [10369434] (imputed)	N
1564	chr3	128379280	128379281	rs141800474	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q21.3		rs141800474-A	0.965	9E-17				Affymetrix [10369434] (imputed)	N
1564	chr3	128381269	128381270	rs34198449	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q21.3		rs34198449-A	NR	6E-32		0.0304	[0.025-0.035] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1564	chr3	128381269	128381270	rs34198449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q21.3	RPN1	rs34198449-A	0.269516	2E-27		0.027333226	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128381269	128381270	rs34198449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q21.3	RPN1	rs34198449-A	0.269564	1E-61		0.048250794	[0.043-0.054] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128381269	128381270	rs34198449	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q21.3		rs34198449-?	NR	3E-37				NR [~ 8900000] (imputed)	N
1564	chr3	128388014	128388015	rs146639727	31178898	Lin BM	2019-05-24	Front Genet	Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.	Mild to moderate chronic kidney disease	1,532 African American cases, 1,336 Hispanic cases, 575 East Asian cases, 608 Native Hawaiian cases, 42 American Indian cases, 57 cases, 13,761 African American controls, 19,317 Hispanic controls, 3,540 East Asian controls, 2,892 Native Hawaiian controls, 595 American Indian controls, 936 controls	NA	3q21.3	RPN1	rs146639727-C	0.004	5E-8		3.05	[2.04-4.56]	Illumina [1438399] (imputed)	N
1564	chr3	128389658	128389659	rs150918492	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3q21.3		rs150918492-G	0.732	3E-18				Affymetrix [10369434] (imputed)	N
1564	chr3	128389658	128389659	rs150918492	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Myeloperoxidase levels	21,758 European ancestry individuals	9,173 individuals	3q21.3		rs150918492-A	0.26	4E-11		0.0648	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1564	chr3	128389658	128389659	rs150918492	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q21.3	RPN1	rs150918492-A	0.267252	9E-17		0.021821408	[0.017-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1564	chr3	128389658	128389659	rs150918492	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q21.3	NR	rs150918492-A	0.26455	1E-35		0.027478	[0.023-0.032] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1564	chr3	128391221	128391222	rs13315649	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q21.3	RPN1	rs13315649-A	0.2782	1E-21		0.03856084	[0.031-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128392372	128392373	rs7650934	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q21.3	RPN1	rs7650934-C	0.58234375	6E-21	(RPN1, 10490_3_3)	0.23924056	[0.19-0.29] unit decrease	Illumina [> 1000000] (imputed)	N
1564	chr3	128402508	128402509	rs9866894	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3q21.3		rs9866894-A	0.085	5E-14				Affymetrix [10369434] (imputed)	N
1564	chr3	128411739	128411740	rs146667422	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3q21.3		rs146667422-A	0.964	2E-12				Affymetrix [10369434] (imputed)	N
1564	chr3	128412023	128412024	rs6785206	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3q21.3	intergenic	rs6785206-G	0.9197	8E-20		0.06049037	[0.047-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
1564	chr3	128425081	128425082	rs55956209	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3q21.3		rs55956209-A	0.609	3E-36				Affymetrix [10369434] (imputed)	N
1564	chr3	128427258	128427259	rs7650872	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs7650872-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1564	chr3	128442020	128442021	rs9847178	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q21.3	NR	rs9847178-C	0.168	2E-8		0.00813015	[0.0053-0.011] unit decrease	NR [9732723] (imputed)	N
1564	chr3	128446191	128446192	rs9820753	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q21.3		rs9820753-G	0.838	2E-9		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1565	chr3	128531920	128531921	rs111804884	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	3q21.3	RAB7A	rs111804884-T	0.9989	9E-6		1.8795	[1.05-2.71] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1565	chr3	128553128	128553129	rs11715119	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	3q21.3	NR	rs11715119-A	0.07553	2E-6		1.035	[0.47-1.6] unit decrease	Illumina [at least 567677] (imputed)	N
1565	chr3	128579323	128579324	rs181752889	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q21.3	NR	rs181752889-C	0.996	2E-9		0.2822	[0.19-0.37] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1566	chr3	128594994	128594995	rs789214	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q21.3		rs789214-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1566	chr3	128601654	128601655	rs116430492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs116430492-G	0.01045	7E-9	(FHL1)	0.008181	NR unit increase	Illumina [1671387] (imputed)	N
1566	chr3	128601654	128601655	rs116430492	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q21.3	NR	rs116430492-G	0.01045	2E-8	(LPP)	0.007958	NR unit increase	Illumina [1671387] (imputed)	N
1566	chr3	128609701	128609702	rs184937941	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q21.3		rs184937941-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1566	chr3	128652552	128652553	rs9810890	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	3q21.3	ACAD9	rs9810890-?	NR	6E-6	(DMFS2)			Illumina [518997]	N
1566	chr3	128658491	128658492	rs2933343	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q21.3	NR	rs2933343-G	0.759492835488185	8E-6	(IGP69)	0.1615	[0.091-0.232] unit decrease	Illumina [~ 2500000] (imputed)	N
1566	chr3	128682197	128682198	rs56003704	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	3q21.3		rs56003704-G	0.939	5E-8				Affymetrix [10369434] (imputed)	N
1566	chr3	128682197	128682198	rs56003704	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Eosinophil counts	234,763 European ancestry individuals	100,553 European ancestry individuals	3q21.3		rs56003704-G	0.939	2E-15				Affymetrix [10369434] (imputed)	N
1566	chr3	128691940	128691941	rs2929860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q21.3		rs2929860-T	0.1878	1E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1566	chr3	128691940	128691941	rs2929860	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q21.3	Intergenic	rs2929860-T	0.1878	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1566	chr3	128701129	128701130	rs6439153	27236921	Rautanen A	2016-06-02	Am J Hum Genet	Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children.	Pneumococcal bacteremia	429 African ancestry cases, 2,677 African ancestry controls	113  African ancestry cases, 1,336 African ancestry controls	3q21.3	KIAA1257	rs6439153-?	NR	5E-7		2.39	[NR]	Affymetrix [up to 10996499] (imputed)	N
1567	chr3	128741070	128741071	rs922857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q21.3		rs922857-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1567	chr3	128747420	128747421	rs55930886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q21.3	EFCC1	rs55930886-T	NR	6E-9		0.0311677	[0.021-0.042] unit increase	Affymetrix [321788] (imputed)	N
1567	chr3	128747420	128747421	rs55930886	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	EFCC1	rs55930886-T	NR	4E-11		0.0340483	[0.024-0.044] unit increase	Affymetrix [321016] (imputed)	N
1567	chr3	128752985	128752986	rs62265318	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q21.3	NR	rs62265318-?	NR	5E-11				Affymetrix [~ 8270000] (imputed)	N
1567	chr3	128775891	128775892	rs147387328	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q21.3		rs147387328-A	NR	3E-21		0.2613	[0.21-0.32] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1567	chr3	128775891	128775892	rs147387328	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q21.3	NR	rs147387328-G	0.9979	6E-21				Affymetrix, Illumina [24588908] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet distribution width	445,262 European ancestry individuals	NA	3q21.3		rs5030764-?	NR	7E-56		0.534629	[0.47-0.6] unit increase	NR [9800000] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Platelet count	444,866 European ancestry individuals	NA	3q21.3		rs5030764-?	NR	9E-91		0.651052	[0.59-0.72] unit decrease	NR [9800000] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean platelet volume	445,364 European ancestry individuals	NA	3q21.3		rs5030764-?	NR	2E-120		0.684904	[0.62-0.75] unit increase	NR [9800000] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q21.3	GP9	rs5030764-G	5.29000000000002E-4	8E-14		0.41832823	[0.31-0.53] unit decrease	Affymetrix [93095623] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q21.3	GP9	rs5030764-G	5.29000000000002E-4	2E-26		0.5971779	[0.49-0.71] unit increase	Affymetrix [93095623] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q21.3	GP9	rs5030764-G	5.29000000000002E-4	1E-35		0.69469213	[0.59-0.8] unit decrease	Affymetrix [93095623] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q21.3	GP9	rs5030764-G	5.27999999999973E-4	3E-23		0.5838784	[0.47-0.7] unit increase	Affymetrix [93095623] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q21.3	NR	rs5030764-A	0.999468	8E-42		0.696045	[0.6-0.8] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1567	chr3	128780763	128780764	rs5030764	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q21.3	NR	rs5030764-A	0.999469	1E-49		0.737572	[0.64-0.84] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1567	chr3	128802188	128802189	rs150425940	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q21.3	Intergenic	rs150425940-A	0.988	2E-6	(AA)	0.078	unit increase	Illumina [NR] (imputed)	N
1567	chr3	128829456	128829457	rs141807517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RAB43, ISY1-RAB43	rs141807517-A	NR	7E-9		0.0554428	[0.037-0.074] unit increase	Affymetrix [319769] (imputed)	N
1567	chr3	128829456	128829457	rs141807517	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RAB43, ISY1-RAB43	rs141807517-A	NR	7E-9		0.055406	[0.037-0.074] unit increase	Affymetrix [319769] (imputed)	N
1567	chr3	128829456	128829457	rs141807517	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q21.3	NR	rs141807517-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1568	chr3	128895513	128895514	rs73212431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q21.3		rs73212431-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1568	chr3	128947968	128947969	rs62266860	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	3q21.3		rs62266860-?	NR	4E-6		0.6420375	[0.37-0.91] unit increase	Illumina [9901720] (imputed)	N
1568	chr3	128966351	128966351	rs60005573	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA		NR	rs60005573-GGATTAT	0.07849600000000001	1E-8		0.0107881	[0.0064-0.0151] unit increase	Affymetrix [16582621] (imputed)	N
1569	chr3	128983852	128983853	rs7428883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q21.3		rs7428883-G	0.743014	2E-8		0.0172782	[0.011-0.023] unit increase	Illumina [13479924] (imputed)	N
1569	chr3	128983852	128983853	rs7428883	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q21.3		rs7428883-G	0.743097	5E-22		0.0221162	[0.018-0.027] unit increase	Illumina [13479295] (imputed)	N
1569	chr3	128983852	128983853	rs7428883	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q21.3	COPG1	rs7428883-?	NR	7E-23		0.032019824	[0.026-0.038] unit increase	Illumina [27896057] (imputed)	N
1569	chr3	128992046	128992047	rs6762578	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	COPG1	rs6762578-G	NR	1E-21		0.0325006	[0.026-0.039] unit decrease	Affymetrix [321016] (imputed)	N
1569	chr3	128992046	128992047	rs6762578	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q21.3		rs6762578-?	NR	2E-94				NR [~ 8900000] (imputed)	N
1569	chr3	128992046	128992047	rs6762578	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q21.3	NR	rs6762578-?	NR	6E-8	(male)	0.22767	[0.15-0.31] unit increase	Affymetrix [7794483] (imputed)	N
1569	chr3	128992046	128992047	rs6762578	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q21.3	NR	rs6762578-?	NR	3E-7	(female)	0.14962	[0.092-0.207] unit increase	Affymetrix [7794483] (imputed)	N
1569	chr3	128992046	128992047	rs6762578	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q21.3	NR	rs6762578-?	NR	1E-13		0.19658	[0.14-0.25] unit increase	Affymetrix [7794483] (imputed)	N
1569	chr3	128994632	128994633	rs62266885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	COPG1	rs62266885-G	NR	3E-11		0.0507234	[0.036-0.066] unit decrease	Affymetrix [319769] (imputed)	N
1569	chr3	128994632	128994633	rs62266885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	COPG1	rs62266885-G	NR	1E-10		0.049163	[0.034-0.064] unit decrease	Affymetrix [319769] (imputed)	N
1569	chr3	128994632	128994633	rs62266885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q21.3	COPG1	rs62266885-G	NR	3E-9		0.0469961	[0.031-0.063] unit increase	Affymetrix [321788] (imputed)	N
1569	chr3	128994632	128994633	rs62266885	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	COPG1	rs62266885-G	NR	7E-15		0.05922	[0.044-0.074] unit increase	Affymetrix [321016] (imputed)	N
1569	chr3	129001143	129001144	rs73862862	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q21.3	NR	rs73862862-C	0.101535	7E-9		0.0639758	[0.042-0.086] unit increase	Affymetrix [17914406] (imputed)	N
1569	chr3	129002119	129002120	rs7434264	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	HMCES	rs7434264-A	NR	2E-10		0.0189985	[0.013-0.025] unit increase	Affymetrix [321016] (imputed)	N
1569	chr3	129013127	129013128	rs13072704	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	HMCES	rs13072704-C	NR	7E-11		0.019613	[0.014-0.026] unit decrease	Affymetrix [321016] (imputed)	N
1569	chr3	129014564	129014565	rs62266900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q21.3	NR	rs62266900-G	NR	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1569	chr3	129020777	129020778	rs6765930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q21.3		rs6765930-G	NR	2E-18		0.017	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1569	chr3	129020777	129020778	rs6765930	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q21.3		rs6765930-G	NR	1E-72		0.0271	[0.024-0.03] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1569	chr3	129020777	129020778	rs6765930	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	HMCES	rs6765930-A	NR	9E-17		0.0307571	[0.024-0.038] unit decrease	Affymetrix [323123] (imputed)	N
1569	chr3	129021794	129021795	rs62266910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	HMCES	rs62266910-T	NR	3E-12		0.0264029	[0.019-0.034] unit increase	Affymetrix [321016] (imputed)	N
1569	chr3	129021794	129021795	rs62266910	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	HMCES	rs62266910-T	NR	3E-9		0.0246616	[0.017-0.033] unit increase	Affymetrix [323123] (imputed)	N
1569	chr3	129033735	129033736	rs4853	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	3q21.3	H1FX	rs4853-T	0.94	2E-18	(japanese)	0.48	[0.38-0.58] year increase	Illumina [at least 532488] (imputed)	N
1569	chr3	129033735	129033736	rs4853	29773799	Horikoshi M	2018-05-17	Nat Commun	Elucidating the genetic architecture of reproductive ageing in the Japanese population.	Menopause (age at onset)	43,861 Japanese ancestry women	32,545 European ancestry women	3q21.3	H1FX	rs4853-T	0.94	1E-16				Illumina [at least 532488] (imputed)	N
1569	chr3	129035030	129035031	rs14323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	H1FX, H1FX-AS1	rs14323-T	NR	2E-10		0.027096	[0.019-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1569	chr3	129035030	129035031	rs14323	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	H1FX, H1FX-AS1	rs14323-T	NR	6E-10		0.0264948	[0.018-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1569	chr3	129035030	129035031	rs14323	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q21.3	NR	rs14323-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
1569	chr3	129035484	129035485	rs4073154	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q21.3	H1FX	rs4073154-A	0.2216	2E-33		0.0274	[0.023-0.032] unit decrease	Affymetrix [18391927] (imputed)	N
1569	chr3	129039735	129039736	rs62266917	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	H1FX-AS1	rs62266917-T	NR	3E-12		0.0368741	[0.026-0.047] unit increase	Affymetrix [321016] (imputed)	N
1569	chr3	129044704	129044705	rs6763292	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3q21.3	H1FX	rs6763292-A	NR	6E-11		0.00982497	[0.0069-0.0128] unit decrease	Affymetrix [10061374] (imputed)	N
1569	chr3	129045905	129045906	rs7636293	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3q21.3	C3orf47	rs7636293-T	0.69	4E-11		0.029	[0.015-0.043] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1569	chr3	129047301	129047302	rs56225966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q21.3	NR	rs56225966-A	0.09088799999999997	2E-15		0.0108675	[0.0079-0.0138] unit increase	Affymetrix [16582909] (imputed)	N
1569	chr3	129047301	129047302	rs56225966	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q21.3	NR	rs56225966-A	0.09088799999999997	3E-9		0.00884837	[0.0056-0.0121] unit increase	Affymetrix [16582965] (imputed)	N
1569	chr3	129050755	129050756	rs6439167	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q21.3	C3orf47	rs6439167-T	0.21	9E-15		0.034	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1569	chr3	129050942	129050943	rs6439168	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q21.3	H1FX	rs6439168-A	0.212	8E-25		0.037	[0.029-0.045] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1569	chr3	129052156	129052157	rs546819639	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q21.3	AC137695.1	rs546819639-T	0.0936	1E-18		0.0283	[0.022-0.035] unit increase	Affymetrix [18391927] (imputed)	N
1569	chr3	129053614	129053615	rs114713783	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	RP13-685P2.8	rs114713783-G	NR	3E-11		0.0417161	[0.029-0.054] unit decrease	Affymetrix [323123] (imputed)	N
1569	chr3	129058984	129058985	rs56134659	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	3q21.3	NR	rs56134659-G		2E-6		0.1117	[0.065-0.158] SD units increase	NR [10700000] (imputed)	N
1569	chr3	129060010	129060011	rs7374197	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	RP13-685P2.7	rs7374197-A	NR	2E-8		0.0173506	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1569	chr3	129092490	129092491	rs6764238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs6764238-C	NR	1E-10		0.0305435	[0.021-0.04] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129092490	129092491	rs6764238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs6764238-C	NR	4E-11		0.0312193	[0.022-0.041] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129099870	129099871	rs6764325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs6764325-A	NR	2E-9		0.0331474	[0.022-0.044] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129099870	129099871	rs6764325	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs6764325-A	NR	1E-9		0.0338227	[0.023-0.045] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129099971	129099972	rs113636864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs113636864-T	NR	4E-15		0.0437196	[0.033-0.055] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129099971	129099972	rs113636864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs113636864-T	NR	2E-15		0.0439911	[0.033-0.055] unit increase	Affymetrix [319769] (imputed)	N
1569	chr3	129099971	129099972	rs113636864	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs113636864-T	NR	2E-8		0.0314815	[0.02-0.042] unit increase	Affymetrix [321169] (imputed)	N
1569	chr3	129099971	129099972	rs113636864	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q21.3	NR	rs113636864-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1569	chr3	129100287	129100288	rs7612128	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1	rs7612128-A	NR	9E-9		0.0231361	[0.015-0.031] unit decrease	Affymetrix [321788] (imputed)	N
1570	chr3	129108158	129108158	rs58915955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1, RPL32P3	rs58915955-AG	NR	3E-15		0.0308143	[0.023-0.038] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129108158	129108158	rs58915955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1, RPL32P3	rs58915955-AG	NR	7E-16		0.0314941	[0.024-0.039] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129108158	129108158	rs58915955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1, RPL32P3	rs58915955-AG	NR	8E-9		0.0226774	[0.015-0.03] unit increase	Affymetrix [321114] (imputed)	N
1570	chr3	129108158	129108158	rs58915955	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q21.3	RP11-529F4.1, RPL32P3	rs58915955-AG	NR	9E-9		0.0226519	[0.015-0.03] unit increase	Affymetrix [321169] (imputed)	N
1570	chr3	129116418	129116419	rs17325066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs17325066-C	NR	9E-19		0.0432356	[0.034-0.053] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129116418	129116419	rs17325066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs17325066-C	NR	1E-17		0.0418529	[0.032-0.051] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129116418	129116419	rs17325066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs17325066-C	NR	6E-10		0.0306152	[0.021-0.04] unit increase	Affymetrix [321169] (imputed)	N
1570	chr3	129117663	129117664	rs11714474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs11714474-T	NR	3E-24		0.0510317	[0.041-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1570	chr3	129117663	129117664	rs11714474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs11714474-T	NR	2E-23		0.050258	[0.04-0.06] unit decrease	Affymetrix [319769] (imputed)	N
1570	chr3	129117663	129117664	rs11714474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs11714474-T	NR	2E-21		0.0496595	[0.039-0.06] unit increase	Affymetrix [321788] (imputed)	N
1570	chr3	129117663	129117664	rs11714474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	RPL32P3	rs11714474-T	NR	2E-30		0.0574862	[0.048-0.067] unit increase	Affymetrix [321016] (imputed)	N
1570	chr3	129117663	129117664	rs11714474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	RPL32P3	rs11714474-T	NR	7E-14		0.0409866	[0.03-0.052] unit increase	Affymetrix [323123] (imputed)	N
1570	chr3	129126872	129126873	rs35580429	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q21.3	NR	rs35580429-?	NR	3E-13				Affymetrix [~ 8270000] (imputed)	N
1570	chr3	129136705	129136706	rs79044827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q21.3	EFCAB12	rs79044827-T	NR	3E-11		0.0727279	[0.051-0.094] unit increase	Affymetrix [321114] (imputed)	N
1570	chr3	129136705	129136706	rs79044827	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q21.3	EFCAB12	rs79044827-T	NR	4E-13		0.0798388	[0.058-0.101] unit increase	Affymetrix [321169] (imputed)	N
1570	chr3	129137126	129137127	rs3796392	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3q21.3	C3orf25, RPL32P3, MBD4	rs3796392-A	0.002	2E-6		15.21	[3.37-68.63]	Illumina [1556551]	N
1570	chr3	129137187	129137188	rs62266958	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3q21.3	EFCAB12	rs62266958-C	0.9356	8E-18		0.0509	[0.039-0.062] unit increase	Affymetrix, Illumina [at least 228985]	N
1570	chr3	129137187	129137188	rs62266958	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	3q21.3	EFCAB12	rs62266958-C	0.931	5E-19		0.0533	[0.042-0.065] unit increase	Affymetrix, Illumina [at least 228985]	N
1570	chr3	129137187	129137188	rs62266958	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3q21.3	EFCAB12	rs62266958-C	0.9361	8E-17		0.0357	[0.027-0.044] unit increase	Affymetrix, Illumina [at least 228985]	N
1570	chr3	129137187	129137188	rs62266958	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3q21.3	EFCAB12	rs62266958-C	0.9303	2E-18		0.038	[0.03-0.046] unit increase	Affymetrix, Illumina [at least 228985]	N
1570	chr3	129138303	129138304	rs75582450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	EFCAB12	rs75582450-A	NR	5E-22		0.105056	[0.084-0.126] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129138303	129138304	rs75582450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	EFCAB12	rs75582450-A	NR	2E-21		0.103581	[0.082-0.125] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129138303	129138304	rs75582450	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	EFCAB12	rs75582450-A	NR	3E-9		0.0644011	[0.043-0.086] unit decrease	Affymetrix [321016] (imputed)	N
1570	chr3	129150384	129150385	rs2307293	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis (anti-topoisomerase-positive)	347 European ancestry cases, 3,466 European ancestry controls, 69 African American cases, 260 African American controls	NA	3q21.3	C3orf25, IFT122, MBD4	rs2307293-?	NR	3E-6	(EA)			Illumina [126270]	N
1570	chr3	129152143	129152144	rs140695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	MBD4	rs140695-T	NR	1E-26		0.0328216	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1570	chr3	129152143	129152144	rs140695	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q21.3	MBD4	rs140695-T	NR	2E-26		0.0326861	[0.027-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1570	chr3	129158034	129158035	rs114422006	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q21.3	MBD4	rs114422006-A	NR	3E-8		0.0690589	[0.045-0.094] unit increase	Affymetrix [319769] (imputed)	N
1570	chr3	129170211	129170212	rs146167147	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q21.3		rs146167147-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1570	chr3	129170304	129170305	rs4688850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q21.3	IFT122	rs4688850-T	NR	1E-9		0.0278186	[0.019-0.037] unit decrease	Affymetrix [321788] (imputed)	N
1570	chr3	129170304	129170305	rs4688850	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q21.3	IFT122	rs4688850-T	NR	6E-13		0.0316442	[0.023-0.04] unit decrease	Affymetrix [321016] (imputed)	N
1570	chr3	129186269	129186270	rs10934884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q21.3	IFT122	rs10934884-A	NR	2E-8		0.0198898	[0.013-0.027] unit increase	Affymetrix [323858] (imputed)	N
1570	chr3	129186269	129186270	rs10934884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q21.3	IFT122	rs10934884-A	NR	3E-8		0.0187186	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1570	chr3	129186269	129186270	rs10934884	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q21.3	IFT122	rs10934884-A	NR	8E-10		0.0191692	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
1570	chr3	129209177	129209178	rs9871967	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3q21.3	IFT122, MBD4, RHO	rs9871967-G	0.002	3E-6		15.18	[3.36-68.47]	Illumina [1556551]	N
1570	chr3	129227237	129227238	rs34574289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	IFT122	rs34574289-G	NR	8E-24		0.0315977	[0.025-0.038] unit increase	Affymetrix [321788] (imputed)	N
1570	chr3	129227237	129227238	rs34574289	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	IFT122	rs34574289-G	NR	2E-30		0.034527	[0.029-0.04] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129265237	129265238	rs575341705	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	3q22.1	H1FOO	rs575341705-T	0.0019	2E-7		0.9008	[0.56-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1571	chr3	129265480	129265481	rs62267567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	H1FOO	rs62267567-C	NR	1E-12		0.0445764	[0.032-0.057] unit increase	Affymetrix [323858] (imputed)	N
1571	chr3	129265480	129265481	rs62267567	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	H1FOO	rs62267567-C	NR	4E-8		0.0306543	[0.02-0.042] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129273842	129273843	rs62267569	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs62267569-?	NR	6E-19				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129278181	129278182	rs56299595	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q22.1	PLXND1	rs56299595-?	NR	2E-8		0.0216	[0.015-0.028] unit increase	Affymetrix [5701386] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811469-A	NR	4E-28		0.031937	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811469-A	NR	1E-27		0.0317016	[0.026-0.037] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811469-A	NR	2E-25		0.0313984	[0.025-0.037] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2811469-A	NR	4E-9		0.0194209	[0.013-0.026] unit increase	Affymetrix [323858] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811469-A	NR	4E-29		0.0324752	[0.027-0.038] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129281457	129281458	rs2811469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811469-A	NR	2E-9		0.0177593	[0.012-0.024] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129281865	129281866	rs2713626	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q22.1		rs2713626-C	0.31	9E-9		5.75	z score increase	Affymetrix [9061022] (imputed)	N
1571	chr3	129281865	129281866	rs2713626	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q22.1	NR	rs2713626-C	0.2854	6E-10				NR [9056863] (imputed)	N
1571	chr3	129282137	129282138	rs2713623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2713623-A	NR	1E-17		0.0280044	[0.022-0.034] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129282137	129282138	rs2713623	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2713623-A	NR	1E-26		0.0335806	[0.027-0.04] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129284126	129284127	rs80245809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs80245809-A	NR	9E-11		0.0768793	[0.054-0.1] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129284126	129284127	rs80245809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs80245809-A	NR	2E-10		0.0757859	[0.053-0.099] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129284126	129284127	rs80245809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs80245809-A	NR	3E-13		0.0896985	[0.066-0.114] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129284126	129284127	rs80245809	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs80245809-A	NR	8E-10		0.072836	[0.05-0.096] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129284126	129284127	rs80245809	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs80245809-?	NR	6E-12				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129284414	129284415	rs2625972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q22.1		rs2625972-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1571	chr3	129284817	129284818	rs2625973	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q22.1	NR	rs2625973-C	0.285324	7E-11		0.013816	[0.0097-0.018] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1571	chr3	129284817	129284818	rs2625973	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3q22.1	PLXND1	rs2625973-A	0.7296	8E-14		0.0248	[0.018-0.031] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129284817	129284818	rs2625973	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	3q22.1	PLXND1	rs2625973-A	0.7206	2E-14		0.0263	[0.02-0.033] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129284817	129284818	rs2625973	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3q22.1	PLXND1	rs2625973-A	0.7328	9E-11		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129284817	129284818	rs2625973	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3q22.1	PLXND1	rs2625973-A	0.7219	1E-11		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	1E-27		0.0631823	[0.052-0.075] unit increase	Affymetrix [319769] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	2E-26		0.0618501	[0.05-0.073] unit increase	Affymetrix [319769] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	8E-10		0.0359541	[0.024-0.047] unit increase	Affymetrix [321114] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	2E-17		0.0511115	[0.039-0.063] unit decrease	Affymetrix [321788] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	1E-18		0.0511709	[0.04-0.063] unit decrease	Affymetrix [321016] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs72628504-G	NR	1E-11		0.0398084	[0.028-0.051] unit increase	Affymetrix [321169] (imputed)	N
1571	chr3	129287003	129287004	rs72628504	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs72628504-?	NR	2E-21				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129289257	129289258	rs2625975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625975-C	NR	8E-25		0.0322204	[0.026-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129289257	129289258	rs2625975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625975-C	NR	8E-24		0.031556	[0.025-0.038] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129289257	129289258	rs2625975	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625975-C	NR	1E-9		0.0193068	[0.013-0.026] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129289977	129289978	rs144843366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs144843366-A	NR	1E-11		0.0785508	[0.056-0.101] unit increase	Affymetrix [319769] (imputed)	N
1571	chr3	129289977	129289978	rs144843366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs144843366-A	NR	3E-12		0.0810281	[0.058-0.104] unit increase	Affymetrix [319769] (imputed)	N
1571	chr3	129289977	129289978	rs144843366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs144843366-A	NR	9E-11		0.0780263	[0.054-0.102] unit decrease	Affymetrix [321788] (imputed)	N
1571	chr3	129289977	129289978	rs144843366	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs144843366-A	NR	2E-8		0.0645926	[0.042-0.087] unit decrease	Affymetrix [321016] (imputed)	N
1571	chr3	129289977	129289978	rs144843366	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs144843366-?	NR	5E-13				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129290186	129290187	rs2285367	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2285367-C	NR	2E-10		0.021363	[0.015-0.028] unit increase	Affymetrix [323123] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	3E-46		0.0536133	[0.046-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	2E-45		0.0531633	[0.046-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	9E-11		0.0245627	[0.017-0.032] unit decrease	Affymetrix [321114] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	2E-35		0.0483948	[0.041-0.056] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2625963-T	NR	7E-14		0.0319115	[0.024-0.04] unit increase	Affymetrix [323858] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	1E-43		0.0519421	[0.045-0.059] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2625963-T	NR	2E-17		0.0346659	[0.027-0.043] unit increase	Affymetrix [323123] (imputed)	N
1571	chr3	129292947	129292948	rs2625963	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2625963-T	NR	5E-17		0.0318235	[0.024-0.039] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129293145	129293146	rs62267570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267570-T	NR	6E-20		0.0723474	[0.057-0.088] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129293145	129293146	rs62267570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267570-T	NR	6E-19		0.0704684	[0.055-0.086] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129293145	129293146	rs62267570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267570-T	NR	2E-17		0.0698737	[0.054-0.086] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129293145	129293146	rs62267570	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267570-T	NR	3E-28		0.0870124	[0.072-0.102] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129293145	129293146	rs62267570	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.1		rs62267570-?	NR	5E-25				NR [~ 8900000] (imputed)	N
1571	chr3	129293255	129293256	rs2255703	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q22.1	NR	rs2255703-C	0.404	4E-11		0.0256	[0.018-0.033] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1571	chr3	129293255	129293256	rs2255703	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women, up to 180,131 African American, South Asian, East Asian and Hispanic ancestry women	up to 62,368 European ancestry women	3q22.1	PLXND1	rs2255703-T	0.6023	2E-9		0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129293255	129293256	rs2255703	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	up to 157,516 European ancestry women	up to 62,368 European ancestry women	3q22.1	PLXND1	rs2255703-T	0.6179	1E-11		0.0213	[0.015-0.028] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129293255	129293256	rs2255703	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals, up to 15,687 African American individuals, up to 29,315 South Asian ancestry individuals, up to 6,800 East Asian ancestry individuals, up to 4,075 Hispanic ancestry individuals	132,177 European ancestry individuals	3q22.1	PLXND1	rs2255703-T	0.6053	4E-7		0.0111	[0.0068-0.0154] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129293255	129293256	rs2255703	30778226	Justice AE	2019-02-18	Nat Genet	Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution.	Waist-to-hip ratio adjusted for BMI (additive genetic model)	288,492 European ancestry individuals	132,177 European ancestry individuals	3q22.1	PLXND1	rs2255703-T	0.6198	3E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix, Illumina [at least 228985]	N
1571	chr3	129293641	129293642	rs115900144	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs115900144-?	NR	9E-12				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129294567	129294568	rs746210	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	PLXND1	rs746210-A	NR	3E-14		0.0398902	[0.03-0.05] unit increase	Affymetrix [323123] (imputed)	N
1571	chr3	129297855	129297856	rs542854259	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q22.1	PLXND1	rs542854259-T	3.64000000000031E-4	2E-10		0.48266193	[0.33-0.63] unit increase	Affymetrix [93095623] (imputed)	N
1571	chr3	129299264	129299265	rs2811466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811466-A	NR	2E-13		0.0348052	[0.025-0.044] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129299264	129299265	rs2811466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2811466-A	NR	3E-9		0.0309121	[0.021-0.041] unit increase	Affymetrix [323858] (imputed)	N
1571	chr3	129299264	129299265	rs2811466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811466-A	NR	1E-16		0.037867	[0.029-0.047] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129299264	129299265	rs2811466	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	PLXND1	rs2811466-A	NR	2E-8		0.0279116	[0.018-0.038] unit increase	Affymetrix [323123] (imputed)	N
1571	chr3	129305918	129305919	rs2301573	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs2301573-T	0.9098	8E-6	(EA,women)	0.0359	[0.02-0.052] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129305918	129305919	rs2301573	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs2301573-T	0.9098	2E-8	(EA)	0.0345	[0.022-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129309454	129309455	rs16861373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.1		rs16861373-A	0.13	3E-14		7.58	z score increase	Affymetrix [9061022] (imputed)	N
1571	chr3	129309454	129309455	rs16861373	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q22.1		rs16861373-A	0.13	2E-9		6.0	z score increase	Affymetrix [9061022] (imputed)	N
1571	chr3	129309454	129309455	rs16861373	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q22.1	NR	rs16861373-A	0.1268	6E-10				NR [9056863] (imputed)	N
1571	chr3	129315830	129315831	rs9837325	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q22.1		rs9837325-?	NR	2E-47				NR [~ 8900000] (imputed)	N
1571	chr3	129315830	129315831	rs9837325	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q22.1	NR	rs9837325-C	0.81	1E-49		0.034	[0.029-0.039] unit increase	Affymetrix [2446094] (imputed)	N
1571	chr3	129315830	129315831	rs9837325	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q22.1	NR	rs9837325-C	0.81	5E-8				Affymetrix [2446094] (imputed)	N
1571	chr3	129320300	129320301	rs1108584	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs1108584-G	NR	8E-11		0.0295194	[0.021-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129320527	129320528	rs1108585	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 1, breadth of lateral portion of upper face)	2,187 European ancestry individuals	NA	3q22.1	NR	rs1108585-A	0.09262	4E-6		0.2362	[0.14-0.34] unit increase	Illumina [10677593] (imputed)	N
1571	chr3	129322815	129322816	rs62267581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267581-G	NR	3E-30		0.0576022	[0.048-0.067] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129322815	129322816	rs62267581	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs62267581-G	NR	4E-38		0.0625457	[0.053-0.072] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129323321	129323322	rs75212171	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs75212171-C	NR	2E-10		0.0710367	[0.049-0.093] unit decrease	Affymetrix [321788] (imputed)	N
1571	chr3	129324607	129324608	rs79870266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs79870266-G	NR	1E-9		0.0465114	[0.032-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129324607	129324608	rs79870266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs79870266-G	NR	2E-9		0.0458316	[0.031-0.061] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129324607	129324608	rs79870266	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs79870266-G	NR	2E-8		0.0429286	[0.028-0.058] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129324607	129324608	rs79870266	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs79870266-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129326319	129326320	rs59627601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs59627601-A	NR	2E-32		0.0572073	[0.048-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129326319	129326320	rs59627601	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs59627601-A	NR	3E-32		0.0571467	[0.048-0.067] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129328710	129328711	rs9840468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs9840468-G	NR	6E-44		0.0511628	[0.044-0.058] unit increase	Affymetrix [321788] (imputed)	N
1571	chr3	129328710	129328711	rs9840468	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs9840468-G	NR	3E-54		0.0548564	[0.048-0.062] unit increase	Affymetrix [321016] (imputed)	N
1571	chr3	129328710	129328711	rs9840468	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs9840468-?	NR	1E-50				Affymetrix [~ 8270000] (imputed)	N
1571	chr3	129329291	129329292	rs11929498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs11929498-C	NR	3E-59		0.0556522	[0.049-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129329291	129329292	rs11929498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs11929498-C	NR	6E-59		0.0555162	[0.049-0.062] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129329291	129329292	rs11929498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs11929498-C	NR	5E-14		0.0260994	[0.019-0.033] unit decrease	Affymetrix [321114] (imputed)	N
1571	chr3	129329291	129329292	rs11929498	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs11929498-C	NR	8E-23		0.0341191	[0.027-0.041] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129331905	129331906	rs11708646	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs11708646-C	NR	3E-11		0.0290466	[0.02-0.038] unit decrease	Affymetrix [321169] (imputed)	N
1571	chr3	129333181	129333182	rs9828772	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q22.1	NR	rs9828772-G	0.1013	3E-11		0.0517	[0.036-0.067] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1571	chr3	129333181	129333182	rs9828772	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q22.1	TMCC1	rs9828772-C	0.8983	4E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1571	chr3	129333205	129333206	rs2811443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811443-C	NR	1E-22		0.0426752	[0.034-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129333205	129333206	rs2811443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	PLXND1	rs2811443-C	NR	2E-22		0.0424591	[0.034-0.051] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	7E-14	(women)	0.0427	[0.032-0.054] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	6E-10	(EA)	0.0304	[0.021-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	5E-8		0.0243	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	1E-15	(EA, women)	0.0499	[0.038-0.062] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.79	7E-14	(women)	0.043	[0.043-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	3E-6	(EA)	0.026	[0.015-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.7927	3E-6		0.026	[0.015-0.037] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.791	2E-10	(women)	0.045	[0.031-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.791	2E-10	(women)	0.045	[0.031-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.1	PLXND1	rs10804591-A	0.791	2E-10	(EA, women)	0.045	[0.031-0.059] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-?	0.7927	3E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-?	0.7927	3E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-?	0.7927	3E-13	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.1	PLXND1	rs10804591-?	0.7927	3E-13	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.1	PLXND1	rs10804591-A	0.7415	3E-8	(women)	0.0339	[0.022-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3q22.1	NR	rs10804591-A	0.793416064960674	2E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3q22.1	NR	rs10804591-A	0.793416064960674	8E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3q22.1	NR	rs10804591-A	0.793416064960674	1E-8		0.023304546	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.795	7E-9	(EA)	0.0245	[0.016-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.793	6E-13	(EA, women)	0.0401	[0.029-0.051] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7687	5E-11	(women)	0.0356	[0.025-0.046] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7665	4E-8		0.0221	[0.014-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7926	2E-7	(EA)	0.0214	[0.013-0.029] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7926	1E-10	(EA, women)	0.0349	[0.024-0.045] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7951	7E-18	(EA)	0.0379	[0.029-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7951	6E-7	(EA,men)	0.0315	[0.019-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129334232	129334233	rs10804591	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.1	PLXND1	rs10804591-A	0.7951	6E-15	(EA, women)	0.0436	[0.033-0.055] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1571	chr3	129335220	129335221	rs111531342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q22.1		rs111531342-G	NR	2E-8		0.042	[0.027-0.057] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1571	chr3	129336056	129336057	rs9853950	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q22.1		rs9853950-T	NR	2E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1571	chr3	129339614	129339615	rs2811434	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3q22.1	PLXND1, RAB43, COPG1, RPL32P3, RHO, TMCC1, TRH, ALG1L2, ISY1-AB43, H1FX, EFCAB12, H1FOO, LOC100507032, FAM86HP, ISY1, C3orf37, MBD4, CNBP, H1FX -AS1, IFT122, SNORA7B	rs2811434-T	0.7924	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129339614	129339615	rs2811434	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex interaction	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3q22.1	PLXND1	rs2811434-T	0.79	3E-8				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129339614	129339615	rs2811434	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI (age >50)	up to 69,944 European ancestry men, up to 88,129 European ancestry women	NA	3q22.1	PLXND1, RAB43, COPG1, RPL32P3, RHO, TMCC1, TRH, ALG1L2, ISY1-RAB43, H1FX, EFCAB12, H1FOO, LOC100507032, FAM86HP, ISY1, C3orf37, MBD4, CNBP, H1FX-AS1, IFT122, SNORA7B	rs2811434-T	0.792433571564535	4E-10	(women)	0.0488	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129339614	129339615	rs2811434	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3q22.1	PLXND1, RAB43, COPG1, RPL32P3, RHO, TMCC1, TRH, ALG1L2, H1FX, EFCAB12, H1FOO, LOC100507032, FAM86HP, ISY1, C3orf37, MBD4, CNBP, IFT122, SNORA7B, ISY1-RAB43, H1FX-AS1	rs2811434-T	0.7924	2E-7		0.0488	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1571	chr3	129340294	129340295	rs1075469	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	RP11-263I1.1	rs1075469-T	NR	3E-16		0.0330662	[0.025-0.041] unit increase	Affymetrix [323858] (imputed)	N
1571	chr3	129341192	129341193	rs56724294	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	RP11-263I1.1	rs56724294-T	NR	3E-21		0.0367733	[0.029-0.044] unit increase	Affymetrix [323123] (imputed)	N
1571	chr3	129341402	129341403	rs6795831	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q22.1	NR	rs6795831-A	0.8144	5E-53		0.0348	[0.03-0.039] unit increase	NR [~ 27400000] (imputed)	N
1571	chr3	129341402	129341403	rs6795831	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q22.1	NA	rs6795831-A	0.8143	2E-37		0.0288	[0.024-0.033] unit increase	NR [~ 27400000] (imputed)	N
1571	chr3	129341402	129341403	rs6795831	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q22.1	NR	rs6795831-A	0.8143	2E-37		0.0288	[0.024-0.033] unit increase	NR [~ 27400000] (imputed)	N
1571	chr3	129342468	129342469	rs55688149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-263I1.1	rs55688149-A	NR	3E-15		0.0418023	[0.031-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129342468	129342469	rs55688149	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-263I1.1	rs55688149-A	NR	5E-15		0.0413476	[0.031-0.052] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129345154	129345155	rs2625989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-263I1.1	rs2625989-G	NR	9E-38		0.0480855	[0.041-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1571	chr3	129345154	129345155	rs2625989	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-263I1.1	rs2625989-G	NR	8E-38		0.048133	[0.041-0.055] unit decrease	Affymetrix [319769] (imputed)	N
1572	chr3	129388412	129388413	rs113053246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	TMCC1	rs113053246-A	NR	2E-8		0.0459804	[0.03-0.062] unit increase	Affymetrix [323858] (imputed)	N
1572	chr3	129388412	129388413	rs113053246	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	TMCC1	rs113053246-A	NR	4E-12		0.0541853	[0.039-0.069] unit increase	Affymetrix [323123] (imputed)	N
1572	chr3	129394833	129394834	rs113948800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs113948800-G	NR	9E-9		0.0331023	[0.022-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1572	chr3	129394833	129394834	rs113948800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs113948800-G	NR	9E-9		0.0331137	[0.022-0.044] unit decrease	Affymetrix [319769] (imputed)	N
1572	chr3	129398164	129398165	rs72628505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs72628505-G	NR	9E-24		0.0577679	[0.047-0.069] unit increase	Affymetrix [319769] (imputed)	N
1572	chr3	129398164	129398165	rs72628505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs72628505-G	NR	5E-23		0.0568513	[0.046-0.068] unit increase	Affymetrix [319769] (imputed)	N
1572	chr3	129398164	129398165	rs72628505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs72628505-G	NR	1E-15		0.0478658	[0.036-0.06] unit decrease	Affymetrix [321788] (imputed)	N
1572	chr3	129398164	129398165	rs72628505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs72628505-G	NR	2E-19		0.0517427	[0.04-0.063] unit decrease	Affymetrix [321016] (imputed)	N
1572	chr3	129398164	129398165	rs72628505	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs72628505-G	NR	8E-10		0.0357725	[0.024-0.047] unit increase	Affymetrix [321169] (imputed)	N
1572	chr3	129429682	129429683	rs34703744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs34703744-G	NR	3E-8		0.0162959	[0.011-0.022] unit decrease	Affymetrix [321788] (imputed)	N
1572	chr3	129429682	129429683	rs34703744	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs34703744-G	NR	8E-12		0.0192848	[0.014-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1572	chr3	129437835	129437836	rs9990031	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs9990031-C	NR	3E-28		0.0422179	[0.035-0.05] unit increase	Affymetrix [321788] (imputed)	N
1572	chr3	129468414	129468415	rs148614065	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs148614065-T	NR	5E-15		0.0917193	[0.069-0.115] unit increase	Affymetrix [319769] (imputed)	N
1572	chr3	129468414	129468415	rs148614065	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs148614065-T	NR	2E-14		0.0895387	[0.067-0.113] unit increase	Affymetrix [319769] (imputed)	N
1572	chr3	129468414	129468415	rs148614065	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs148614065-T	NR	2E-11		0.0787166	[0.056-0.102] unit decrease	Affymetrix [321016] (imputed)	N
1572	chr3	129468414	129468415	rs148614065	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs148614065-?	NR	4E-15				Affymetrix [~ 8270000] (imputed)	N
1572	chr3	129470066	129470067	rs559138871	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q22.1	TMCC1	rs559138871-T	0.002	7E-6		1.49	[1.25-1.77]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1573	chr3	129508544	129508545	rs7625799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs7625799-G	NR	2E-9		0.022362	[0.015-0.03] unit decrease	Affymetrix [321114] (imputed)	N
1573	chr3	129508544	129508545	rs7625799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs7625799-G	NR	1E-31		0.0428909	[0.036-0.05] unit increase	Affymetrix [321016] (imputed)	N
1573	chr3	129508544	129508545	rs7625799	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs7625799-G	NR	2E-14		0.0283484	[0.021-0.036] unit decrease	Affymetrix [321169] (imputed)	N
1573	chr3	129540835	129540836	rs56338922	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs56338922-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
1573	chr3	129554171	129554171	rs3993144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs3993144-CAT	NR	3E-9		0.0323119	[0.022-0.043] unit increase	Affymetrix [321788] (imputed)	N
1573	chr3	129554171	129554171	rs3993144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs3993144-CAT	NR	1E-8		0.029776	[0.02-0.04] unit increase	Affymetrix [321016] (imputed)	N
1573	chr3	129603905	129603906	rs62265602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs62265602-T	NR	2E-22		0.0599933	[0.048-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1573	chr3	129603905	129603906	rs62265602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs62265602-T	NR	5E-22		0.0594545	[0.047-0.072] unit decrease	Affymetrix [319769] (imputed)	N
1573	chr3	129603905	129603906	rs62265602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1	rs62265602-T	NR	1E-20		0.0595358	[0.047-0.072] unit increase	Affymetrix [321788] (imputed)	N
1573	chr3	129603905	129603906	rs62265602	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1	rs62265602-T	NR	6E-29		0.068721	[0.057-0.081] unit increase	Affymetrix [321016] (imputed)	N
1573	chr3	129603905	129603906	rs62265602	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q22.1	TMCC1	rs62265602-T	0.0555	4E-7		0.0763	[0.047-0.106] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1574	chr3	129635232	129635233	rs79285477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs79285477-C	NR	4E-20		0.0417167	[0.033-0.051] unit increase	Affymetrix [321788] (imputed)	N
1574	chr3	129635232	129635233	rs79285477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs79285477-C	NR	7E-26		0.0459271	[0.037-0.054] unit increase	Affymetrix [321016] (imputed)	N
1574	chr3	129635232	129635233	rs79285477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	TMCC1-AS1	rs79285477-C	NR	4E-12		0.0329741	[0.024-0.042] unit increase	Affymetrix [323123] (imputed)	N
1574	chr3	129635232	129635233	rs79285477	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs79285477-C	NR	5E-9		0.0258651	[0.017-0.035] unit decrease	Affymetrix [321169] (imputed)	N
1574	chr3	129640014	129640015	rs143334396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs143334396-G	NR	4E-14		0.0573683	[0.042-0.072] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129640014	129640015	rs143334396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs143334396-G	NR	7E-14		0.0568549	[0.042-0.072] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129640014	129640015	rs143334396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs143334396-G	NR	5E-10		0.0491366	[0.034-0.065] unit decrease	Affymetrix [321788] (imputed)	N
1574	chr3	129640014	129640015	rs143334396	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs143334396-G	NR	8E-13		0.0542726	[0.039-0.069] unit decrease	Affymetrix [321016] (imputed)	N
1574	chr3	129640014	129640015	rs143334396	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs143334396-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
1574	chr3	129646688	129646689	rs9818312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs9818312-C	NR	4E-11		0.0217846	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129646688	129646689	rs9818312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs9818312-C	NR	7E-11		0.0215328	[0.015-0.028] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129646688	129646689	rs9818312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs9818312-C	NR	7E-12		0.0235311	[0.017-0.03] unit increase	Affymetrix [321788] (imputed)	N
1574	chr3	129646688	129646689	rs9818312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TMCC1-AS1	rs9818312-C	NR	5E-15		0.0257444	[0.019-0.032] unit increase	Affymetrix [321016] (imputed)	N
1574	chr3	129646688	129646689	rs9818312	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs9818312-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1574	chr3	129666063	129666064	rs34925435	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	3q22.1	TRH	rs34925435-?	NR	5E-6	(males)	2.7270248		Affymetrix, Illumina [2928658] (imputed)	N
1574	chr3	129667455	129667456	rs1708241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs1708241-A	NR	6E-18		0.0315266	[0.024-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129667455	129667456	rs1708241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs1708241-A	NR	6E-18		0.0315547	[0.024-0.039] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129667455	129667456	rs1708241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs1708241-A	NR	3E-18		0.03307	[0.026-0.041] unit increase	Affymetrix [321788] (imputed)	N
1574	chr3	129667455	129667456	rs1708241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q22.1	RP11-93K22.6	rs1708241-A	NR	3E-9		0.0246111	[0.016-0.033] unit increase	Affymetrix [323858] (imputed)	N
1574	chr3	129667455	129667456	rs1708241	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.1	RP11-93K22.6	rs1708241-A	NR	1E-10		0.0254979	[0.018-0.033] unit increase	Affymetrix [323123] (imputed)	N
1574	chr3	129669618	129669619	rs885406	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs885406-G	NR	5E-9		0.0204787	[0.014-0.027] unit increase	Affymetrix [321788] (imputed)	N
1574	chr3	129670290	129670291	rs1708893	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs1708893-T	NR	4E-11		0.0218166	[0.015-0.028] unit increase	Affymetrix [321016] (imputed)	N
1574	chr3	129671419	129671420	rs1708237	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	3q22.1	RP11-93K22.6	rs1708237-?	NR	4E-7		5.052	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1574	chr3	129672675	129672676	rs11720666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs11720666-A	NR	3E-8		0.0624314	[0.04-0.085] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129672675	129672676	rs11720666	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs11720666-A	NR	4E-8		0.0620294	[0.04-0.084] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129674371	129674372	rs62265627	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs62265627-T	NR	4E-23		0.0389743	[0.031-0.047] unit increase	Affymetrix [321016] (imputed)	N
1574	chr3	129677840	129677841	rs76074386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs76074386-A	NR	5E-12		0.0350263	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129677840	129677841	rs76074386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs76074386-A	NR	6E-12		0.034846	[0.025-0.045] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129677840	129677841	rs76074386	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.6	rs76074386-A	NR	3E-10		0.0318635	[0.022-0.042] unit decrease	Affymetrix [321016] (imputed)	N
1574	chr3	129677840	129677841	rs76074386	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs76074386-?	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1574	chr3	129701252	129701252	rs11380331	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q22.1		rs11380331-AT	NR	4E-9		0.0126	[0.0085-0.0167] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1574	chr3	129701252	129701252	rs11380331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q22.1	NR	rs11380331-AT	NR	4E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1574	chr3	129701252	129701252	rs11380331	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q22.1	NR	rs11380331-AT	NR	2E-9		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1574	chr3	129706147	129706148	rs62281843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	TRH	rs62281843-A	NR	2E-14		0.0276589	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129706147	129706148	rs62281843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TRH	rs62281843-A	NR	2E-14		0.0276664	[0.021-0.035] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129706147	129706148	rs62281843	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	TRH	rs62281843-A	NR	4E-14		0.0283576	[0.021-0.036] unit increase	Affymetrix [321788] (imputed)	N
1574	chr3	129706992	129706993	rs10934899	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	TRH	rs10934899-A	NR	4E-8		0.016193	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1574	chr3	129721433	129721434	rs71333643	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.1	rs71333643-A	NR	5E-8		0.0230278	[0.015-0.031] unit decrease	Affymetrix [321016] (imputed)	N
1574	chr3	129733967	129733968	rs2953796	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.7	rs2953796-G	NR	1E-8		0.018144	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129733967	129733968	rs2953796	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.7	rs2953796-G	NR	3E-8		0.017741	[0.011-0.024] unit increase	Affymetrix [319769] (imputed)	N
1574	chr3	129733967	129733968	rs2953796	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q22.1	RP11-93K22.7	rs2953796-G	NR	3E-9		0.0197703	[0.013-0.026] unit decrease	Affymetrix [321788] (imputed)	N
1574	chr3	129733967	129733968	rs2953796	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	RP11-93K22.7	rs2953796-G	NR	2E-13		0.0233811	[0.017-0.03] unit decrease	Affymetrix [321016] (imputed)	N
1574	chr3	129733967	129733968	rs2953796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.1		rs2953796-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1574	chr3	129735649	129735650	rs6803518	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q22.1	NR	rs6803518-T	0.75435	5E-8		0.00709109	[0.0042-0.0099] unit increase	Affymetrix [16585854] (imputed)	N
1574	chr3	129745974	129745975	rs2953761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q22.1	NR	rs2953761-A	0.7756000000000001	3E-10		0.00638413	[0.0044-0.0084] unit increase	Affymetrix [16582909] (imputed)	N
1574	chr3	129745974	129745975	rs2953761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q22.1	NR	rs2953761-A	0.7756000000000001	3E-10		0.00676669	[0.0046-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1574	chr3	129747348	129747349	rs28850104	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.1	NR	rs28850104-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1574	chr3	129756203	129756204	rs62283508	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q22.1		rs62283508-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1576	chr3	129971100	129971101	rs9813712	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3q22.1	intergenic	rs9813712-?	NR	2E-6	(SF1)			Affymetrix [5476100] (imputed)	N
1576	chr3	130001003	130001004	rs186306418	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3q22.1	NR	rs186306418-T	0.01	2E-6		1.72	[1.5-1.94]	Illumina [8468885] (imputed)	N
1577	chr3	130038950	130038951	rs73866789	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs73866789-T	0.02091	2E-9	(SERPINA1)	2.668	NR unit increase	Illumina [1671387] (imputed)	N
1577	chr3	130038950	130038951	rs73866789	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs73866789-T	0.02091	2E-9	(HP)	4.691	NR unit increase	Illumina [1671387] (imputed)	N
1577	chr3	130038950	130038951	rs73866789	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs73866789-T	0.02091	1E-11	(LRG1)	0.06035	NR unit increase	Illumina [1671387] (imputed)	N
1577	chr3	130057148	130057149	rs116907247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Basophil count	91,908 East Asian ancestry individuals	NA	3q22.1		rs116907247-T	0.081717	3E-8		0.047702	[0.031-0.065] unit increase	Illumina [13469940] (imputed)	N
1577	chr3	130127999	130128000	rs79394681	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		COL6A5	rs79394681-?	NR	8E-11	(male)	3.45763	[NR] unit increase	Affymetrix [NR] (imputed)	N
1577	chr3	130137470	130137471	rs1542829	24348519	Namjou B	2013-12-03	Front Genet	EMR-linked GWAS study: investigation of variation landscape of loci for body mass index in children.	Body mass index	up to 2,860 European ancestry children	NA	3q22.1	COL6A5	rs1542829-?	0.05	1E-8		5.89	[NR] z score increase	Affymetrix, Illumina [up to 583824] (imputed)	N
1578	chr3	130154727	130154727	rs34050653	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q22.1	COL6A5	rs34050653-CAG	0.9325	7E-6		0.0618	[0.035-0.089] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1578	chr3	130171228	130171229	rs62281868	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.1	COL6A5	rs62281868-C	NR	3E-8		0.0472479	[0.031-0.064] unit increase	Affymetrix [321016] (imputed)	N
1578	chr3	130189737	130189738	rs200982668	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Hypertension	3,444 Japanese ancestry cases, 4,636 Japanese ancestry controls	NA	3q22.1	COL6A5	rs200982668-G	0.987	4E-7		1.7857143		Illumina [31276]	N
1578	chr3	130189737	130189738	rs200982668	30226566	Yamada Y	2018-09-04	Int J Mol Med	Identification of 13 novel susceptibility loci for early-onset myocardial infarction, hypertension, or chronic kidney disease.	Chronic kidney disease	1,051 Japanese ancestry cases, 1,505 Japanese ancestry controls	NA	3q22.1	COL6A5	rs200982668-G	0.987	5E-9		4.7619047		Illumina [31514]	N
1578	chr3	130233340	130233341	rs114624737	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	3q22.1	COL6A5, COL6A6	rs114624737-A	0.989806848	8E-6		1.5175089	[1.26-1.82]	Illumina [10439017] (imputed)	N
1578	chr3	130243472	130243473	rs561417389	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs561417389-C	0.995165	3E-10				Affymetrix, Illumina [17210439] (imputed)	N
1579	chr3	130330341	130330342	rs115249592	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	3q22.1	COL6A6	rs115249592-C	0.015	7E-7		4.98	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
1579	chr3	130408128	130408129	rs57987297	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs57987297-C	0.0122	4E-9	(EIF2B1)	0.02028	NR unit increase	Illumina [1671387] (imputed)	N
1579	chr3	130415305	130415306	rs79664160	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	3q22.1		rs79664160-?	NR	7E-6				Illumina [7401356] (imputed)	N
1580	chr3	130422852	130422853	rs75940184	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	3q22.1	PIK3R4	rs75940184-C	0.047	5E-7	(EA)	5.04	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
1580	chr3	130514935	130514936	rs10934960	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q22.1	PIK3R4, ATP2C1	rs10934960-?		5E-11				Affymetrix, Illumina [NR] (imputed)	N
1580	chr3	130535566	130535567	rs35987657	33239738	Didriksen M	2020-11-25	Commun Biol	Large genome-wide association study identifies three novel risk variants for restless legs syndrome.	Restless legs syndrome	10,257 European ancestry cases, 470,725 European ancestry controls	up to 15,126 European ancestry cases, up to 95,725 European ancestry controls	3q22.1	NR	rs35987657-G	0.33	4E-21		0.9	[0.88-0.92]	Affymetrix, Illumina [15838848] (imputed)	N
1580	chr3	130535566	130535567	rs35987657	29029846	Schormair B	2017-11-01	Lancet Neurol	Identification of novel risk loci for restless legs syndrome in genome-wide association studies in individuals of European ancestry: a meta-analysis.	Restless legs syndrome	15,126 European ancestry cases, 95,725 European ancestry controls	30,770 European ancestry cases, 286,913 European ancestry controls	3q22.1	ATP2C1, ASTE1	rs35987657-A	0.669999999999999	4E-38		1.1111112	[1.09-1.12]	Affymetrix, Illumina [6864281] (imputed)	N
1581	chr3	130548023	130548024	rs77265432	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	GSTO3P	rs77265432-A	0.9202	5E-6		0.0641	[0.037-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1581	chr3	130548023	130548024	rs77265432	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	GSTO3P	rs77265432-A	0.9202	5E-6		0.0641	[0.037-0.092] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1581	chr3	130639927	130639928	rs56121231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	RP11-39E3.3, ATP2C1	rs56121231-T	0.8098	4E-6		0.0439	[0.025-0.063] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1581	chr3	130639927	130639928	rs56121231	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	RP11-39E3.3, ATP2C1	rs56121231-T	0.8098	4E-6		0.0439	[0.025-0.063] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1581	chr3	130661407	130661408	rs78944711	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs78944711-A	0.01045	3E-9	(HNRNPH3)	0.1057	NR unit increase	Illumina [1671387] (imputed)	N
1582	chr3	130715747	130715748	rs3773814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q22.1		rs3773814-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1582	chr3	130749601	130749602	rs16835559	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	3q22.1	NEK11, ASTE1, LOC339874	rs16835559-A	0.01467	9E-6		12.47	[6.96-17.98] unit increase	Illumina [up to 4929806] (imputed)	N
1582	chr3	130752213	130752214	rs113253175	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q22.1	NEK11	rs113253175-T	0.968	8E-6		0.1003	[0.056-0.144] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1582	chr3	130785105	130785106	rs1389271	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Hip bone mineral density and total body fat mass (bivariate analysis)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	3q22.1	NEK11	rs1389271-?		1E-9				Affymetrix, Illumina [2374420] (imputed)	N
1582	chr3	130785105	130785106	rs1389271	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	3q22.1	NR	rs1389271-T	NR	4E-11		0.12	[0.081-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1582	chr3	130785105	130785106	rs1389271	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	3q22.1	NR	rs1389271-T	NR	1E-11				Affymetrix, Illumina [NR] (imputed)	N
1583	chr3	130863651	130863652	rs183626006	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q22.1	NR	rs183626006-?	NR	1E-7		4079.1162	NR unit decrease	Illumina [2379855]	N
1584	chr3	130947434	130947435	rs3738000	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	3q22.1	NEK11	rs3738000-?	NR	6E-6	(Age-sex-adjusted)			Illumina [32817]	N
1584	chr3	130957129	130957130	rs59647576	33531474	Burton CL	2021-02-02	Transl Psychiatry	Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder.	Obsessive-compulsive traits	5,018 European ancestry children and adolescents	NA	3q22.1	NEK11	rs59647576-?	NR	4E-6		0.133	[0.076-0.19] unit decrease	Illumina [7870334] (imputed)	N
1585	chr3	131074510	131074511	rs73220544	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3q22.1		rs73220544-A	0.842	2E-8		0.016	[0.01-0.022] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1585	chr3	131095475	131095476	rs118184987	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	3q22.1	LOC339874	rs118184987-?	NR	1E-7		10.2	NR	Illumina [802276]	N
1585	chr3	131102580	131102581	rs114241756	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q22.1	NR	rs114241756-?	NR	1E-7		4079.1162	NR unit decrease	Illumina [2379855]	N
1585	chr3	131193289	131193290	rs74809119	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobiota abundance in stool	5,959 Finnish ancestry individuals	NA	3q22.1		rs74809119-A	0.0169635	2E-9		0.0512064	[0.034-0.068] unit increase	Illumina [7980478] (imputed)	N
1585	chr3	131193289	131193290	rs74809119	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Elusimicrobia abundance in stool	5,959 Finnish ancestry individuals	NA	3q22.1		rs74809119-A	0.0169635	2E-9		0.0800636	[0.054-0.106] unit increase	Illumina [7980478] (imputed)	N
1586	chr3	131298558	131298559	rs112851966	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3q22.1		rs112851966-G	0.0031721	4E-6		0.27463	[0.16-0.39] unit decrease	Affymetrix [15580782] (imputed)	N
1586	chr3	131322681	131322682	rs114438632	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	3q22.1		rs114438632-?	NR	5E-8		1.3971	[0.9-1.9] unit decrease	Affymetrix [NR] (imputed)	N
1587	chr3	131406139	131406140	rs11714976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs11714976-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1587	chr3	131438445	131438446	rs9826951	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs9826951-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1587	chr3	131438445	131438446	rs9826951	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.1		rs9826951-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1587	chr3	131438967	131438968	rs188775815	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q22.1		rs188775815-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1588	chr3	131506936	131506937	rs17295394	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs17295394-?	NR	2E-17				Affymetrix [~ 8270000] (imputed)	N
1588	chr3	131516787	131516788	rs73222317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q22.1	NR	rs73222317-A	NR	2E-9		0.022	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1588	chr3	131521275	131521276	rs73875019	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs73875019-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1588	chr3	131531327	131531328	rs16837858	27171184	Kuo HC	2016-05-12	PLoS One	Genome-Wide Association Study Identifies Novel Susceptibility Genes Associated with Coronary Artery Aneurysm Formation in Kawasaki Disease.	Coronary artery aneurysm in Kawasaki disease	11 Taiwanese ancestry cases, 146 Taiwanese ancestry controls	NA	3q22.1	CPNE4	rs16837858-?	0.006849	3E-6		22.89	[NR]	Affymetrix [559609]	N
1588	chr3	131551026	131551027	rs11709402	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs11709402-?	NR	2E-27				Affymetrix [~ 8270000] (imputed)	N
1588	chr3	131564740	131564741	rs13063979	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q22.1	NA	rs13063979-T	0.7323	1E-12		0.0135	[0.0098-0.0172] unit decrease	NR [~ 27400000] (imputed)	N
1588	chr3	131574484	131574485	rs9856151	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.1	CPNE4	rs9856151-A	0.27	2E-6	(EA)	0.017	[0.0098-0.0232] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1588	chr3	131574484	131574485	rs9856151	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.1	CPNE4	rs9856151-A	0.267	7E-7		0.017	[0.01-0.023] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1588	chr3	131576286	131576287	rs9838144	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q22.1	NR	rs9838144-C	0.209	4E-9		0.00971521	[0.0065-0.0129] unit decrease	NR [~ 9732723] (imputed)	N
1588	chr3	131576286	131576287	rs9838144	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3q22.1	NR	rs9838144-C	0.209	3E-8		0.009964223	[0.0065-0.0135] unit decrease	NR [~ 10000000] (imputed)	N
1588	chr3	131579809	131579810	rs7428670	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q22.1	NA	rs7428670-C	0.2697	6E-31		0.022	[0.018-0.026] unit increase	NR [~ 27400000] (imputed)	N
1589	chr3	131607538	131607539	rs2199351	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	3q22.1	CPNE4	rs2199351-?	NR	9E-6		1.2048193	[1.11-1.3]	Illumina [254145]	N
1589	chr3	131618540	131618541	rs9847672	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q22.1		rs9847672-T	0.28	3E-11				NR [NR] (imputed)	N
1589	chr3	131618540	131618541	rs9847672	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3q22.1		rs9847672-T	0.28	7E-11		0.013	mmol/L decrease	NR [NR] (imputed)	N
1589	chr3	131618540	131618541	rs9847672	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q22.1		rs9847672-T	0.28	3E-18		0.014	% increase	NR [NR] (imputed)	N
1589	chr3	131625375	131625376	rs112859723	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q22.1	CPNE4	rs112859723-T	0.842887	6E-9		0.0111434	[0.0074-0.0149] unit increase	Affymetrix [12370749]	N
1589	chr3	131626047	131626048	rs11925138	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q22.1	CPNE4	rs11925138-G	0.904169	3E-8		0.0132341	[0.0086-0.0179] unit increase	Affymetrix [12370749]	N
1589	chr3	131626047	131626048	rs11925138	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.1		rs11925138-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1589	chr3	131632209	131632210	rs1228588	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q22.1	NR	rs1228588-T	NR	4E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
1589	chr3	131637172	131637173	rs1225060	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q22.1	NR	rs1225060-A	0.2772	8E-17		0.023159726	[0.018-0.029] unit increase	Affymetrix [10549349] (imputed)	N
1589	chr3	131637675	131637676	rs876424	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q22.1	NR	rs876424-T	NR	3E-8		0.017	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1589	chr3	131637675	131637676	rs876424	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3q22.1	MRPL3, SNORA58, MIR5704, ACPP, DNAJC13	rs876424-T	0.650799403367889	1E-9		0.018912453	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1589	chr3	131642851	131642852	rs1225053	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q22.1	CPNE4	rs1225053-T	0.735506	5E-12		0.0149852	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1589	chr3	131642851	131642852	rs1225053	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	3q22.1	CPNE4	rs1225053-?	NR	2E-12				NR [5554549] (imputed)	N
1589	chr3	131642851	131642852	rs1225053	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	3q22.1	CPNE4	rs1225053-?	NR	3E-17				NR [5554549] (imputed)	N
1589	chr3	131644936	131644937	rs1225052	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q22.1	NR	rs1225052-G	0.3705	1E-8		0.0271	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1589	chr3	131645971	131645972	rs1225051	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3q22.1	CPNE4	rs1225051-A	0.44	3E-8		0.014	[0.0081-0.0199] unit increase	Illumina [6108953] (imputed)	N
1589	chr3	131646163	131646163	rs779470261	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	3q22.1	CPNE4	rs779470261-C	0.26329	7E-9		0.0431103	[0.029-0.058] unit increase	Affymetrix [9463307] (imputed)	N
1589	chr3	131646166	131646171	rs56127322	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q22.1		rs56127322-C	NR	9E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1589	chr3	131692329	131692330	rs748729	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q22.1	ACPP	rs748729-?	NR	6E-6	(LPC 20:5)	0.24866344	[0.14-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1589	chr3	131692909	131692910	rs114999403	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	3q22.1	CPNE4	rs114999403-?		3E-6	(French Canadians)	3.403514		Illumina [7614484] (imputed)	N
1589	chr3	131704851	131704852	rs79775365	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		CPNE4	rs79775365-?	NR	6E-7		0.96	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1589	chr3	131704851	131704852	rs79775365	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	L1-L4 bone mineral density x serum urate levels interaction	2,207 men, 2,354 women	NA		CPNE4	rs79775365-?	NR	2E-6	(male)	0.871521	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1589	chr3	131708184	131708185	rs11708163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q22.1	Intergenic	rs11708163-T	0.5424	9E-10	(MTAG)	0.0101	[0.0068-0.0134] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1589	chr3	131708184	131708185	rs11708163	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q22.1	Intergenic	rs11708163-T	0.5397	2E-8	(MTAG)	0.0074	[0.0049-0.0099] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1589	chr3	131713565	131713566	rs1320900	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation positive individuals	up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	3q22.1	CPNE4	rs1320900-?	NR	4E-7		1.2987013	[1.18-1.45]	Illumina [254145]	N
1589	chr3	131713565	131713566	rs1320900	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis	4,243 European ancestry cases, 5,112 European ancestry controls	NA	3q22.1	CPNE4	rs1320900-?	0.34	7E-6	(Joint)	1.1905	[1.09-1.3]	Illumina [254145]	N
1589	chr3	131716104	131716105	rs9834560	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	3q22.1	CPNE4	rs9834560-C	0.61	1E-14		0.041	[0.031-0.051] unit decrease	Illumina [7428049] (imputed)	N
1589	chr3	131717794	131717795	rs7613261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q22.1		rs7613261-T	NR	3E-19		0.0225	[0.018-0.027] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1590	chr3	131730241	131730242	rs10512839	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs10512839-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1590	chr3	131750351	131750352	rs1406779	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q22.1		rs1406779-T	NR	9E-17		0.0167	[0.013-0.021] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1590	chr3	131750465	131750466	rs1406778	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs1406778-?	NR	7E-21				Affymetrix [~ 8270000] (imputed)	N
1590	chr3	131750493	131750494	rs74676686	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs74676686-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1590	chr3	131750843	131750844	rs9857204	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q22.1	NR	rs9857204-G	0.7085	2E-10		0.0272	[0.019-0.036] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1590	chr3	131751627	131751628	rs7631156	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q22.1	NA	rs7631156-A	0.3091	3E-32		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1590	chr3	131751774	131751775	rs13076253	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	HDL cholesterol levels	34,930 East Asian ancestry individuals, 187,167 European ancestry individuals	8,741 Chinese ancestry individuals	3q22.1	ACAD11	rs13076253-A	0.852	2E-9	(Trans-ethnic initial)	0.0283	[0.019-0.038] unit increase (EA Beta values)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1590	chr3	131753687	131753688	rs7649058	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	3q22.1	NR	rs7649058-T	0.6886	1E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
1590	chr3	131758076	131758077	rs1320903	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q22.1	CPNE4	rs1320903-G	0.68029	3E-23		0.0146157	[0.012-0.017] unit decrease	Affymetrix [12370749]	N
1590	chr3	131758076	131758077	rs1320903	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.1		rs1320903-?	NR	6E-28				NR [~ 8900000] (imputed)	N
1590	chr3	131758076	131758077	rs1320903	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q22.1	NA	rs1320903-A	0.3107	4E-32		0.0215	[0.018-0.025] unit increase	NR [~ 27400000] (imputed)	N
1590	chr3	131774641	131774642	rs7625768	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q22.1	CPNE4	rs7625768-G	0.682031	2E-11		0.0101684	[0.0072-0.0131] unit decrease	Affymetrix [12370749]	N
1590	chr3	131783277	131783278	rs554318837	34506852	Chang X	2021-09-07	J Allergy Clin Immunol	A genome-wide association meta-analysis identifies new Eosinophilic esophagitis loci.	Eosinophilic esophagitis	1,288 European ancestry male cases, 6,548 European ancestry male controls	NA	3q22.1	CPNE4	rs554318837-C	0.0076	4E-8		2.88	[1.98-4.21]	Illumina [11310926] (imputed)	N
1590	chr3	131786593	131786594	rs2951398	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs2951398-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1590	chr3	131813899	131813900	rs6775745	21507922	Ramsuran V	2011-05-01	Clin Infect Dis	Duffy-null-associated low neutrophil counts influence HIV-1 susceptibility in high-risk South African black women.	Neutrophil count	115 African ancestry HIV-negative individuals	NA	3q22.1	CPNE4	rs6775745-?	NR	2E-7				Illumina [874956]	N
1590	chr3	131833005	131833006	rs10934989	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q22.1	Intergenic	rs10934989-A	0.4401	4E-10	(MTAG)	0.0113	[0.0078-0.0148] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1590	chr3	131833005	131833006	rs10934989	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q22.1	Intergenic	rs10934989-G	0.5599	6E-9		0.0114	[0.0075-0.0153] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1591	chr3	131864135	131864136	rs148258131	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q22.1	NR	rs148258131-?	NR	2E-6	(Japanese)	0.7519	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1591	chr3	131867526	131867527	rs3914906	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	3q22.1	CPNE4	rs3914906-?	0.14	9E-8	(women)	0.318	NR unit increase	Illumina [628376]	N
1591	chr3	131876253	131876254	rs187281066	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	CPNE4, ACPP	rs187281066-A	NR	3E-7		0.937	[0.58-1.3] unit increase	Illumina [27700000] (imputed)	N
1591	chr3	131876604	131876605	rs3851998	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.1	NR	rs3851998-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1591	chr3	131879145	131879146	rs3893429	27021288	Brevik EJ	2016-03-29	Am J Med Genet B Neuropsychiatr Genet	Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder.	Aggressiveness in attention deficit hyperactivity disorder	1,060 European ancestry adult cases	NA	3q22.1	CPNE4	rs3893429-A		4E-6		1.5454	[0.89-2.2] unit decrease	Illumina [7576458] (imputed)	N
1591	chr3	131901391	131901392	rs1505809	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	3q22.1	NR	rs1505809-?	NR	5E-6		5.215	[3.08-7.35] unit increase	Illumina [~ 4900000] (imputed)	N
1591	chr3	131901391	131901392	rs1505809	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	3q22.1	NR	rs1505809-?		5E-6		1.867	[0.71-3.02] unit increase	Illumina [~ 4900000] (imputed)	N
1591	chr3	131908827	131908828	rs1847831	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q22.1		rs1847831-G	0.464	3E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1591	chr3	131916995	131916996	rs9836270	28090653	Liu Y	2017-01-16	Clin Pharmacol Ther	Genome-Wide Study Links PNPLA3 Variant With Elevated Hepatic Transaminase After Acute Lymphoblastic Leukemia Therapy.	Alanine aminotransferase (ALT) levels after remission induction therapy in actute lymphoblastic leukemia (ALL)	up to 488 European ancestry cases, up to 111 African American cases, up to 60 Hispanic cases, up to 56 other ancestry cases	NA	3q22.1	CPNE4	rs9836270-A		2E-6	(Hispanic)	1.98	[1.11-3.53]	Affymetrix, Illumina [NR] (imputed)	N
1591	chr3	131945721	131945722	rs9826984	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q22.1	NR	rs9826984-G	0.461372	7E-9		0.0118093	[0.0078-0.0158] unit increase	NR [NR]	N
1591	chr3	131945721	131945722	rs9826984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q22.1	NR	rs9826984-A	0.542	1E-11		0.00731829	[0.0052-0.0094] unit decrease	NR [9732723] (imputed)	N
1591	chr3	131945721	131945722	rs9826984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q22.1	NR	rs9826984-A	0.542	4E-8		0.014052859	[0.009-0.0191] unit decrease	NR [~ 10000000] (imputed)	N
1591	chr3	131966746	131966747	rs905993	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.1		rs905993-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1591	chr3	131968208	131968209	rs56392241	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q22.1	ACPP	rs56392241-A	0.606788	9E-12		0.0139708	[0.0098-0.0181] unit increase	NR [16516521] (imputed)	N
1592	chr3	131996108	131996109	rs147041671	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	3q22.1	NR	rs147041671-T	0.02063	1E-6		0.5065	[0.3-0.71] unit increase	Illumina [10677593] (imputed)	N
1592	chr3	132006336	132006337	rs73213820	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q22.1	NR	rs73213820-C	NR	1E-9		0.0288	[0.02-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1592	chr3	132021415	132021416	rs61792837	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q22.1		rs61792837-A	NR	4E-8		0.0255	[0.016-0.035] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1592	chr3	132021905	132021906	rs1100396	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q22.1	NR	rs1100396-C	0.279983	4E-11		0.01359	[0.0096-0.0176] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1592	chr3	132038055	132038056	rs11714679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q22.1		rs11714679-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1592	chr3	132098773	132098774	rs73215959	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.1	NR	rs73215959-T	NR	1E-9		0.042	[0.028-0.056] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132136439	132136440	rs112409831	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	DNAJC13	rs112409831-C	NR	8E-7		0.365	[0.22-0.51] unit increase	Illumina [27700000] (imputed)	N
1593	chr3	132141173	132141174	rs73215984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.1	NR	rs73215984-T	NR	4E-10		0.0608	[0.042-0.08] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132141173	132141174	rs73215984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3q22.1	NR	rs73215984-T	NR	4E-9		0.0574	[0.038-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132157428	132157429	rs3849409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3q22.1		rs3849409-G	NR	6E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.1	NR	rs17404153-G	NR	5E-7		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.1	NR	rs17404153-G	0.878	6E-7	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.1	NR	rs17404153-G	NR	6E-8		0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.1	NR	rs17404153-G	0.878	3E-7	(EA)	0.037	unit increase	Affymetrix [at least 7091467] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.1	ACAD11	rs17404153-T	0.14	2E-9		0.034	[NR] unit decrease	NR [NR] (imputed)	N
1593	chr3	132163199	132163200	rs17404153	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.1	ACAD11	rs17404153-T	0.14	5E-9		0.028	[NR] unit decrease	NR [NR] (imputed)	N
1593	chr3	132181819	132181820	rs77682405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q22.1		rs77682405-T	NR	4E-13		0.0401	[0.029-0.051] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1593	chr3	132184525	132184526	rs9832919	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q22.1	DNAJC13	rs9832919-A	0.6426	8E-20		0.0179	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1593	chr3	132184525	132184526	rs9832919	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs9832919-G	0.366529	8E-14				Affymetrix, Illumina [24649327] (imputed)	N
1593	chr3	132184525	132184526	rs9832919	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q22.1		rs9832919-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1593	chr3	132188162	132188163	rs78946096	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q22.1		rs78946096-G	NR	1E-8		0.0236	[0.015-0.032] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1593	chr3	132188162	132188163	rs78946096	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q22.1	DNAJC13	rs78946096-A	0.9473	1E-9		0.0599	[0.04-0.079] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1593	chr3	132188162	132188163	rs78946096	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3q22.1	NR	rs78946096-A	0.0546	1E-7	(men)	0.0944	[0.06-0.129] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1593	chr3	132188162	132188163	rs78946096	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q22.1	DNAJC13	rs78946096-A	0.9501	2E-10		0.0414	[0.029-0.054] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1593	chr3	132188162	132188163	rs78946096	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q22.1	DNAJC13	rs78946096-A	0.9501	2E-10		0.0413	[0.029-0.054] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1593	chr3	132189047	132189048	rs3929422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q22.1	DNAJC13	rs3929422-C	0.354647	2E-10		0.014674488	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1593	chr3	132189047	132189048	rs3929422	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q22.1	DNAJC13	rs3929422-C	0.354658	6E-11		0.015177464	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3q22.1	DNAJC13	rs62292950-T	0.87	3E-13		7.28	z-score increase	Affymetrix [4314223] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q22.1	DNAJC13	rs62292950-G	0.132678	1E-33		0.03948557	[0.033-0.046] unit increase	Affymetrix [93095623] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs62292950-T	0.856446	4E-38				Affymetrix, Illumina [22063850] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q22.1	NR	rs62292950-T	0.866923	4E-40		0.036711	[0.031-0.042] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q22.1	NR	rs62292950-T	0.867505	2E-8		0.00629655	[0.0039-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q22.1	NR	rs62292950-T	0.867505	2E-7		0.00671692	[0.004-0.0094] unit increase	Affymetrix [16582965] (imputed)	N
1593	chr3	132197994	132197995	rs62292950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q22.1		rs62292950-?	NR	4E-37				NR [~ 8900000] (imputed)	N
1593	chr3	132198815	132198815	rs137893155	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q22.1	DNAJC13	rs137893155-GTTATT	0.105932	2E-11		0.024548916	[0.017-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
1593	chr3	132202012	132202013	rs7641195	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q22.1	DNAJC13	rs7641195-C	0.538028	9E-23		0.00228674	[0.0018-0.0027] unit decrease	Affymetrix [13995440] (imputed)	N
1593	chr3	132202448	132202449	rs62292953	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs62292953-A	0.133782	1E-13				Affymetrix, Illumina [23114412] (imputed)	N
1593	chr3	132202448	132202449	rs62292953	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q22.1	DNAJC13	rs62292953-A	0.131	1E-10		0.03380187	[0.024-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1593	chr3	132206085	132206089	rs75511812	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q22.1	DNAJC13	rs75511812-A	0.087197	5E-9		0.023388134	[0.016-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1593	chr3	132206290	132206291	rs112880875	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q22.1	NR	rs112880875-A	0.09019	1E-15		0.026849	[0.02-0.033] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1593	chr3	132206403	132206403	rs577887768	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q22.1	NR	rs577887768-I	0.13778	1E-12		0.0216	[0.016-0.028] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1593	chr3	132206403	132206403	rs577887768	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q22.1	DNAJC13	rs577887768-ATTTTTTTTTTTTTTT	NR	3E-10		0.0367742	[0.025-0.048] unit increase	Affymetrix [16832071] (imputed)	N
1593	chr3	132209202	132209203	rs17345563	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	3q22.1	ACAD11	rs17345563-A	0.871	1E-9	(Trans-ethnic initial)	0.0358	[0.025-0.047] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q22.1		rs113177823-A	NR	2E-14		0.0396	[0.029-0.05] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q22.1		rs113177823-A	NR	8E-17		0.0378	[0.029-0.047] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q22.1		rs113177823-A	NR	7E-15		0.0428	[0.032-0.054] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3q22.1		rs113177823-A	NR	2E-12		0.037	[0.027-0.047] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3q22.1	DNAJC13	rs113177823-G	0.945866	1E-18		0.0410816	[0.032-0.05] unit increase	Affymetrix [NR] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3q22.1	DNAJC13	rs113177823-G	0.945903	9E-19		0.0411203	[0.032-0.05] unit increase	Affymetrix [NR] (imputed)	N
1593	chr3	132217702	132217703	rs113177823	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q22.1	DNAJC13	rs113177823-?	NR	8E-20		0.052	[0.042-0.062] unit decrease	Affymetrix [5701386] (imputed)	N
1593	chr3	132218438	132218441	rs770511518	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q22.1	NR	rs770511518-AT	0.357382	8E-9		0.0392463	[0.025-0.053] unit decrease	Affymetrix [17914406] (imputed)	N
1593	chr3	132218622	132218623	rs3762672	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q22.1	DNAJC13, ACAD11	rs3762672-?		5E-9				Affymetrix, Illumina [NR] (imputed)	N
1593	chr3	132222600	132222601	rs7651369	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q22.1	NR	rs7651369-A	0.65	4E-9		0.0112	[0.0074-0.015] unit increase	NR [NR]	N
1593	chr3	132226099	132226100	rs79953286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q22.1		rs79953286-G	NR	9E-21		0.0474	[0.037-0.057] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q22.1		rs79953286-G	NR	4E-27		0.0546	[0.045-0.065] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q22.1		rs79953286-A	0.942	8E-17		0.2	[0.15-0.24] % increase	Affymetrix [NR] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 3)	19,670 European ancestry individuals	NA	3q22.1		rs79953286-?	NR	1E-11				NR [9705931] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.1	NR	rs79953286-G	NR	1E-9		0.0314	[0.021-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3q22.1	NR	rs79953286-G	NR	2E-12		0.0362	[0.026-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.1	NR	rs79953286-G	NR	2E-16		0.0424	[0.032-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3q22.1	NR	rs79953286-G	NR	2E-11		0.0345	[0.024-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q22.1	DNAJC13	rs79953286-G	0.058323	2E-27		0.0493362	[0.041-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	DNAJC13	rs79953286-G	0.058328	2E-33		0.05642604	[0.047-0.066] unit decrease	Affymetrix [93095623] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q22.1	NR	rs79953286-G	0.058784	7E-17		0.032845	[0.025-0.041] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q22.1	DNAJC13	rs79953286-G		1E-10		0.03	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1593	chr3	132226099	132226100	rs79953286	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q22.1		rs79953286-?	NR	2E-34				NR [~ 8900000] (imputed)	N
1593	chr3	132230951	132230952	rs78677447	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL21	5,365 Icelandic ancestry individuals	NA	3q22.1		rs78677447-A	0.01812	9E-27		0.750176	[0.61-0.89] unit increase	Illumina [7506463] (imputed)	N
1593	chr3	132234985	132234986	rs3762673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q22.1	DNAJC13	rs3762673-G	0.463573	4E-14		0.0160664	[0.012-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1593	chr3	132235343	132235344	rs80120242	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q22.1	DNAJC13	rs80120242-A	0.9467	2E-9		0.062418	[0.042-0.083] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1593	chr3	132240099	132240100	rs11924792	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q22.1	DNAJC13	rs11924792-C	0.11	1E-57	(C-C motif chemokine 21, CCL21.2516.57.3)	0.61	[0.53-0.69] unit decrease	Affymetrix [10572788] (imputed)	N
1593	chr3	132241509	132241510	rs2305625	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCL21	5,365 Icelandic ancestry individuals	NA	3q22.1		rs2305625-T	0.119	1E-67		0.48282	[0.43-0.54] unit decrease	Illumina [7506463] (imputed)	N
1593	chr3	132250940	132250941	rs11915472	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q22.1		rs11915472-G	NR	2E-16		0.0328	[0.025-0.041] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1593	chr3	132250940	132250941	rs11915472	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q22.1	NR	rs11915472-G	0.090317	7E-16		0.025857	[0.02-0.032] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1593	chr3	132250949	132250950	rs11923334	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q22.1		rs11923334-A	NR	9E-9		0.0239	[0.016-0.032] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1593	chr3	132250949	132250950	rs11923334	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q22.1	NR	rs11923334-A	0.0905	4E-11				NR [9056863] (imputed)	N
1594	chr3	132257418	132257419	rs17412738	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q22.1	DNAJC13, ACAD11, NPHP3, NPHP3-ACAD11, ACKR4, HSPA8P19, UBA5	rs17412738-G	0.1195762	5E-13	(EA, C-C motif chemokine 21)	0.4839	[0.35-0.61] unit decrease	Affymetrix [509946]	N
1594	chr3	132257960	132257961	rs10512861	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q22.1	DNAJC13	rs10512861-T	0.1433	3E-9		0.0431	[0.029-0.057] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1594	chr3	132257960	132257961	rs10512861	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q22.1	DNAJC13	rs10512861-T	0.1441	2E-8		0.0454	[0.03-0.061] unit decrease	NR [8041861] (imputed)	N
1594	chr3	132269361	132269362	rs62293987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs62293987-A	0.114199	2E-16				Affymetrix, Illumina [24653286] (imputed)	N
1594	chr3	132269361	132269362	rs62293987	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs62293987-A	0.114176	3E-10				Affymetrix, Illumina [24558453] (imputed)	N
1594	chr3	132291054	132291055	rs115823871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q22.1		rs115823871-T	NR	6E-9		0.0248	[0.016-0.033] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1594	chr3	132291155	132291156	rs75537912	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q22.1	DNAJC13, ACAD11, NPHP3, ACKR4, UBA5	rs75537912-?		9E-10				NR [7428630] (imputed)	N
1594	chr3	132301748	132301749	rs1869862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.1		rs1869862-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1594	chr3	132330053	132330054	rs61292904	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q22.1		rs61292904-G	0.13	3E-10		6.31	z score increase	Affymetrix [9061022] (imputed)	N
1594	chr3	132338345	132338346	rs41272321	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q22.1	ACAD11	rs41272321-G		5E-11		0.023	[NR] unit decrease	Affymetrix, Illumina [43000000] (imputed)	N
1594	chr3	132338345	132338346	rs41272321	30134952	Traglia M	2018-08-22	Genome Med	Cross-genetic determination of maternal and neonatal immune mediators during pregnancy.	Neonatal cytokine/chemokine levels (fetal genetic effect)	764 Hispanic, European, Asian, South Asian or African American individuals	NA	3q22.1	ACKR4	rs41272321-G	0.13	3E-10	(CCL21)	0.2	[0.14-0.26] unit decrease	Affymetrix [622716]	N
1594	chr3	132345488	132345489	rs113322334	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3q22.1	NR	rs113322334-?		4E-8	(Genu of corpus callosum)			NR [8955960] (imputed)	N
1594	chr3	132375340	132375340	rs34116314	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q22.1	NR	rs34116314-AT	0.237	5E-47	(C-C motif chemokine 21, CCL21.2516.57.3)	0.43	[0.37-0.49] unit decrease	Affymetrix [10572788] (imputed)	N
1594	chr3	132378996	132378997	rs16839481	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	NPHP3-ACAD11	rs16839481-G	NR	6E-7		0.15	[0.091-0.209] unit decrease	Illumina [27700000] (imputed)	N
1595	chr3	132391213	132391213	rs3046203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q22.1		rs3046203-CAT	NR	4E-8		0.0125	[0.008-0.017] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1595	chr3	132403417	132403418	rs34391943	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs34391943-T	0.01045	9E-9	(PCCA)	0.3427	NR unit increase	Illumina [1671387] (imputed)	N
1595	chr3	132403417	132403418	rs34391943	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs34391943-T	0.01045	2E-10	(PCCB)	0.4007	NR unit increase	Illumina [1671387] (imputed)	N
1595	chr3	132411167	132411168	rs17348614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q22.1	NPHP3	rs17348614-T	0.059	2E-10		0.04797724	[0.033-0.063] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1595	chr3	132411167	132411168	rs17348614	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q22.1	NPHP3	rs17348614-T	0.059	3E-14		0.05731955	[0.043-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1595	chr3	132415423	132415424	rs76177059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.1	NR	rs76177059-C	NR	9E-12		0.0288	[0.021-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1595	chr3	132415423	132415424	rs76177059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3q22.1	NR	rs76177059-C	NR	5E-10		0.0263	[0.018-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1595	chr3	132415423	132415424	rs76177059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3q22.1	NR	rs76177059-C	NR	6E-15		0.033	[0.025-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1595	chr3	132415423	132415424	rs76177059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.1	NR	rs76177059-C	NR	8E-15		0.0328	[0.025-0.041] unit decrease	Affymetrix [9000000] (imputed)	N
1595	chr3	132415423	132415424	rs76177059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3q22.1	NR	rs76177059-C	NR	4E-14		0.032	[0.024-0.04] unit decrease	Affymetrix [9000000] (imputed)	N
1595	chr3	132421997	132421998	rs79328618	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q22.1		rs79328618-G	0.913887	3E-8		0.0395619	[0.026-0.054] unit decrease	NR [11722792] (imputed)	N
1595	chr3	132427030	132427031	rs141477666	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Serum alkaline phosphatase levels	437,896 European ancestry individuals	NA	3q22.1		rs141477666-?	NR	4E-12		0.0729717	[0.05-0.096] unit increase	NR [9800000] (imputed)	N
1595	chr3	132429446	132429447	rs62292471	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q22.1		rs62292471-T	NR	2E-15		0.0252	[0.019-0.031] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1595	chr3	132429446	132429447	rs62292471	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q22.1	NPHP3	rs62292471-T	0.11	3E-11		6.66	z-score increase	Affymetrix [4311822] (imputed)	N
1595	chr3	132434861	132434862	rs572076167	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3q22.1		rs572076167-T	0.863277	8E-20		0.117645	[0.091-0.144] decrease	Affymetrix [11014269] (imputed)	N
1595	chr3	132434861	132434862	rs572076167	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs572076167-G	0.138446	5E-12				Affymetrix, Illumina [21126107] (imputed)	N
1595	chr3	132434861	132434862	rs572076167	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q22.1	NPHP3-ACAD11	rs572076167-T	0.8626	2E-8		0.113	[0.073-0.153] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1595	chr3	132491192	132491193	rs79239275	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q22.1	NR	rs79239275-A	NR	1E-10		0.0366	[0.025-0.048] unit increase	Affymetrix [9000000] (imputed)	N
1595	chr3	132511047	132511048	rs180936035	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q22.1	NR	rs180936035-G		7E-6		0.3991	[0.22-0.58] SD units decrease	NR [10700000] (imputed)	N
1596	chr3	132558240	132558241	rs9818010	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first birth	542,901 European ancestry individuals	NA	3q22.1	NPHP3-AS1	rs9818010-T	0.2823	6E-10		0.063	[0.043-0.083] unit increase	NR [9744772] (imputed)	N
1596	chr3	132610751	132610752	rs6439371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q22.1		rs6439371-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1596	chr3	132610751	132610752	rs6439371	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	3q22.1	TMEM108, NPHP3	rs6439371-?	NR	4E-6				Illumina [12039492]	N
1596	chr3	132610751	132610752	rs6439371	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3q22.1	TMEM108, NPHP3	rs6439371-G	0.34	1E-8		2.3	[1.52-3.08] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1596	chr3	132612663	132612664	rs9863544	33263727	Li HJ	2020-12-02	JAMA Psychiatry	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	Bipolar disorder	1,822 Han Chinese ancestry cases, 4,650 Han Chinese ancestry controls	958 Han Chinese ancestry cases, 2,050 Han Chinese ancestry controls	3q22.1	TMEM108	rs9863544-T	0.058	2E-8		0.65	[0.559-0.756]	Illumina [4499546] (imputed)	N
1596	chr3	132615463	132615464	rs2600959	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q22.1	ACAD11	rs2600959-A	0.34	4E-11		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1596	chr3	132620576	132620577	rs140095460	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q22.1	NPHP3-AS1	rs140095460-C	0.9976	1E-7		0.4256	[0.27-0.58] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1596	chr3	132622656	132622657	rs16839793	25742292	Aschebrook-Kilfoy B	2015-03-05	PLoS One	Genome-wide association study of parity in Bangladeshi women.	Number of pregnancies	1,686 Bangladeshi women	NA	3q22.1	NR	rs16839793-?		5E-6		0.28	unit decrease	Illumina [1211988] (imputed)	N
1597	chr3	132693587	132693588	rs2369955	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (heaviness of drinking)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	3q22.1	intergenic	rs2369955-A	0.16	2E-6		0.136	[NR] unit decrease	Illumina [~ 300000]	N
1597	chr3	132702210	132702211	rs7625328	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3q22.1	Intergenic	rs7625328-T	NR	2E-6		0.017379	[0.01-0.025] unit decrease	Illumina [13520550] (imputed)	N
1597	chr3	132725362	132725363	rs1013391	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q22.1	NR	rs1013391-C	0.4239	1E-10				NR [9056863] (imputed)	N
1597	chr3	132727902	132727903	rs7617456	22036096	Ramasamy A	2011-11-01	J Allergy Clin Immunol	A genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.	IgE grass sensitization	2,315 European ancestry cases, 10,032 European ancestry controls	NA	3q22.1	TMEM108	rs7617456-G	0.59	3E-6		1.18	[1.10-1.26]	Affymetrix, Illumina [2217510] (imputed)	N
1597	chr3	132732199	132732200	rs187918360	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q22.1	NR	rs187918360-G		8E-6		0.3808	[0.21-0.55] SD units increase	NR [10700000] (imputed)	N
1597	chr3	132736381	132736382	rs6439381	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q22.1		rs6439381-G	0.4	5E-11		6.58	z score increase	Affymetrix [9061022] (imputed)	N
1597	chr3	132757292	132757293	rs869368	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.1		rs869368-G	0.3	2E-14		7.62	z score increase	Affymetrix [9061022] (imputed)	N
1598	chr3	132779249	132779250	rs13085017	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.1	NR	rs13085017-G	0.05749	4E-10	(AKR1B10)	1.026	NR unit increase	Illumina [1671387] (imputed)	N
1598	chr3	132780355	132780356	rs9875380	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q22.1	TMEM108	rs9875380-T	0.4614	2E-11		0.1651	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1598	chr3	132801238	132801239	rs4854572	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q22.1	TMEM108	rs4854572-A	0.4388	2E-11		0.1819	[0.13-0.23] mmHg decrease	Affymetrix [NR] (imputed)	N
1598	chr3	132863052	132863053	rs140605895	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TMEM108	rs140605895-?	NR	1E-8	(female)	1.58339	[NR] unit increase	Affymetrix [NR] (imputed)	N
1598	chr3	132865237	132865238	rs181558074	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q22.1	NR	rs181558074-G		8E-6		0.3778	[0.21-0.55] SD units increase	NR [10700000] (imputed)	N
1598	chr3	132865237	132865238	rs181558074	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-9 levels	3,634 Finnish ancestry individuals	NA	3q22.1	NR	rs181558074-G		7E-6		0.624	[0.35-0.9] SD units increase	NR [10700000] (imputed)	N
1598	chr3	132869406	132869407	rs192622883	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	TMEM108	rs192622883-A	NR	1E-8		1.036	[0.68-1.39] unit increase	Illumina [27700000] (imputed)	N
1599	chr3	132971326	132971327	rs13065394	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q22.1	TMEM108	rs13065394-G	0.714	4E-11		1.0277789		Affymetrix [11880941] (imputed)	N
1599	chr3	132971326	132971327	rs13065394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q22.1		rs13065394-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1599	chr3	132985955	132985956	rs138073281	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	3q22.1	TMEM108	rs138073281-C	0.017	2E-8		2.86	[1.98-4.13] (HR)	Illumina [11220132] (imputed)	N
1599	chr3	133032891	133032892	rs2699869	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3q22.1	TMEM108	rs2699869-A		1E-9		0.0066	[0.0044-0.0088] unit increase	Affymetrix [13304133] (imputed)	N
1599	chr3	133032891	133032892	rs2699869	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q22.1		rs2699869-A	0.454	5E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1600	chr3	133049261	133049262	rs183511413	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	TMEM108	rs183511413-A	NR	4E-8		0.989	[0.63-1.34] unit increase	Illumina [27700000] (imputed)	N
1600	chr3	133074399	133074400	rs749204609	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	TMEM108	rs749204609-A	0.9951	8E-6		1.0046	[0.56-1.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1600	chr3	133074399	133074400	rs749204609	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	3q22.1	TMEM108	rs749204609-A	0.9951	8E-6		1.0046	[0.56-1.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1600	chr3	133101793	133101795	rs113509723	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	3q22.1	TMEM108	rs113509723-?	NR	6E-8		1.58	[1.45-1.71]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1601	chr3	133217907	133217908	rs112368179	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	3q22.1	ENSG00000214301	rs112368179-?	NR	8E-6				Affymetrix, Illumina [15642250] (imputed)	N
1601	chr3	133260873	133260874	rs11708304	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	3q22.1	CDV3	rs11708304-C	0.853	6E-6		0.059	[0.034-0.084] unit decrease	Illumina [6150213] (imputed)	N
1601	chr3	133293617	133293618	rs3821508	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q22.1	NR	rs3821508-A	0.34	7E-7	(IFNalpha_STAT4_of_CD4p_T)			Illumina [5084123] (imputed)	N
1602	chr3	133399701	133399702	rs2718812	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	TOPBP1	rs2718812-?	NR	1E-6	(serum transferrin)			Illumina [315887]	N
1602	chr3	133410647	133410648	rs1867503	25534755	Chaste P	2014-09-30	Biol Psychiatry	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Autism spectrum disorder-related traits	1633 European ancestry trios, 942 trios	NA	3q22.1	intergenic	rs1867503-?	NR	4E-7	(ASD paternal model)	1.55	[1.30-1.84]	Illumina [up to 2017939]	N
1602	chr3	133410660	133410661	rs1867504	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	TF	rs1867504-?	NR	2E-6	(serum transferrin)			Illumina [315887]	N
1602	chr3	133430894	133430895	rs190500289	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3q22.1	Intergenic	rs190500289-A	NR	8E-7	(between families)	4.934	unit increase	Affymetrix [up to 15107142] (imputed)	N
1603	chr3	133457513	133457514	rs9872999	25224454	Li J	2014-09-15	Hum Mol Genet	Genome-wide admixture and association study of serum iron, ferritin, transferrin saturation and total iron binding capacity in African Americans.	Iron status biomarkers	2,347 African American individuals	329 African American individuals	3q22.1	TF	rs9872999-T	0.62	5E-20	(TIBC)	11.72	[9.21-14.23] unit decrease	Affymetrix [~ 17000000] (imputed)	N
1603	chr3	133463456	133463457	rs8177179	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q22.1	TF	rs8177179-A	0.521	3E-49		0.154	[0.13-0.17] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q22.1	TF	rs8177318-A	7.84000000000007E-4	3E-18		0.38752565	[0.3-0.47] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q22.1	TF	rs8177318-A	7.81000000000032E-4	4E-10		0.27812424	[0.19-0.37] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q22.1	TF	rs8177318-A	7.84000000000007E-4	7E-22		0.402291	[0.32-0.48] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q22.1	TF	rs8177318-A	7.81999999999949E-4	4E-12		0.290727	[0.2-0.38] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	TF	rs8177318-A	7.84000000000007E-4	5E-31		0.5124362	[0.43-0.6] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q22.1	TF	rs8177318-A	0.0013	6E-12		0.3511039	[0.25-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q22.1	TF	rs8177318-A	0.0013	2E-12		0.3581947	[0.26-0.46] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3q22.1	TF	rs8177318-A	0.0013	2E-10		0.3197374	[0.22-0.42] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133467376	133467377	rs8177318	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q22.1	TF	rs8177318-A	0.0013	2E-18		0.4480368	[0.35-0.55] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q22.1	NR	rs1799852-T	NR	3E-9		0.0252	[0.017-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q22.1	TF	rs1799852-T	0.094272	6E-16		0.030574786	[0.023-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs1799852-C	0.903151	1E-15				Affymetrix, Illumina [22063850] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q22.1		rs1799852-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q22.1	TF	rs1799852-T	0.098	7E-9		0.11	[0.073-0.147] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
1603	chr3	133475721	133475722	rs1799852	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	TF	rs1799852-?	0.09	5E-6	(serum transferrin)	0.43	[0.25-0.61] s.d. decrease	Illumina [315887]	N
1603	chr3	133475811	133475812	rs1799899	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	TF	rs1799899-A	0.06	1E-9	(CDT concentration)	0.402	[0.27-0.53] unit decrease	Affymetrix [390631] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q22.1		rs150854910-T	NR	5E-31		0.394	[0.33-0.46] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q22.1		rs150854910-T	NR	4E-37		0.4316	[0.37-0.5] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	3q22.1		rs150854910-?	NR	4E-14		0.219956	[0.16-0.28] unit decrease	NR [9800000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red blood cell count	445,305 European ancestry individuals	NA	3q22.1		rs150854910-?	NR	4E-14		0.21919	[0.16-0.27] unit decrease	NR [9800000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean sphered cell volume	437,736 European ancestry individuals	NA	3q22.1		rs150854910-?	NR	1E-12		0.191644	[0.14-0.25] unit increase	NR [9800000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular volume	444,035 European ancestry individuals	NA	3q22.1		rs150854910-?	NR	6E-48		0.390307	[0.34-0.44] unit increase	NR [9800000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Mean corpuscular hemoglobin concentration	443,081 European ancestry individuals	NA	3q22.1		rs150854910-?	NR	4E-59		0.436218	[0.38-0.49] unit increase	NR [9800000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00124100000000005	5E-11		0.20589449	[0.14-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00123499999999999	1E-11		0.21286973	[0.15-0.27] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00124199999999997	2E-13		0.23253189	[0.17-0.29] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00123700000000004	7E-43		0.42594	[0.37-0.48] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00123499999999999	8E-9		0.180883	[0.12-0.24] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	TF	rs150854910-T	0.00123700000000004	2E-47		0.45218804	[0.39-0.51] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs150854910-C	0.998712	1E-47				Affymetrix, Illumina [24246363] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q22.1	NR	rs150854910-C	0.998713	9E-49		0.383347	[0.33-0.43] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q22.1	NR	rs150854910-C	0.998736	3E-58		0.442349	[0.39-0.5] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q22.1	TF	rs150854910-T	0.0015	3E-13		0.356681	[0.26-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133476768	133476769	rs150854910	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q22.1	TF	rs150854910-T	0.0015	3E-13		0.3582461	[0.26-0.45] unit increase	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133476851	133476852	rs3811658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q22.1		rs3811658-T	0.465641	1E-13		0.0266076	[0.02-0.034] unit decrease	Illumina [13476266] (imputed)	N
1603	chr3	133477700	133477701	rs8177240	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3q22.1		rs8177240-G	0.466177	1E-8		0.0179387	[0.012-0.024] unit increase	Illumina [13479135] (imputed)	N
1603	chr3	133477700	133477701	rs8177240	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3q22.1	NR	rs8177240-T	0.532675	4E-13		0.029673	[0.022-0.038] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1603	chr3	133477700	133477701	rs8177240	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q22.1	TF	rs8177240-T	0.669	7E-38		0.1	[0.084-0.116] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
1603	chr3	133477700	133477701	rs8177240	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q22.1	TF	rs8177240-T	0.669	8E-610		0.38	[0.37-0.39] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
1603	chr3	133477700	133477701	rs8177240	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (iron levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q22.1	TF	rs8177240-T	0.669	7E-20		0.066	[0.052-0.080] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
1603	chr3	133478353	133478354	rs2692666	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (iron levels)	12,580 Hispanic/Latino individuals	NA	3q22.1	TF	rs2692666-G	NR	3E-6		0.306	unit increase	Illumina [27700000] (imputed)	N
1603	chr3	133478556	133478557	rs6762415	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q22.1		rs6762415-G	NR	3E-12		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1603	chr3	133478556	133478557	rs6762415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q22.1	NR	rs6762415-G	NR	1E-12		0.0177	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr3	133478556	133478557	rs6762415	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3q22.1	NR	rs6762415-G	NR	1E-9		0.0152	[0.01-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr3	133478556	133478557	rs6762415	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q22.1	TF	rs6762415-T	0.464711	1E-8		0.010907	[0.0072-0.0147] unit increase	Affymetrix [NR] (imputed)	N
1603	chr3	133479229	133479230	rs8177245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q22.1		rs8177245-G	NR	2E-16		0.0146	[0.011-0.018] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1603	chr3	133479498	133479499	rs8177247	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q22.1		rs8177247-G	NR	1E-14		0.0168	[0.012-0.021] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1603	chr3	133479498	133479499	rs8177247	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q22.1		rs8177247-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1603	chr3	133479625	133479626	rs8177248	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs8177248-T	0.36095	2E-20				Affymetrix, Illumina [24332387] (imputed)	N
1603	chr3	133479625	133479626	rs8177248	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	TF	rs8177248-C	NR	4E-322		0.649	[0.62-0.68] unit decrease	Illumina [27700000] (imputed)	N
1603	chr3	133480173	133480174	rs8177252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TF	5,345 Icelandic ancestry individuals	NA	3q22.1		rs8177252-A	0.2684	2E-33		0.233472	[0.2-0.27] unit increase	Illumina [7506463] (imputed)	N
1603	chr3	133480173	133480174	rs8177252	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAALAD2	5,360 Icelandic ancestry individuals	NA	3q22.1		rs8177252-A	0.2684	4E-54		0.322576	[0.28-0.36] unit increase	Illumina [7506463] (imputed)	N
1603	chr3	133480191	133480192	rs8177253	25224454	Li J	2014-09-15	Hum Mol Genet	Genome-wide admixture and association study of serum iron, ferritin, transferrin saturation and total iron binding capacity in African Americans.	Iron status biomarkers	2,347 African American individuals	329 African American individuals		TF	rs8177253-T	0.24	2E-47	(TIBC)	19.86	[17.23-22.49] unit increase	Affymetrix [~ 17000000] (imputed)	N
1603	chr3	133480457	133480458	rs8177260	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q22.1		rs8177260-A	0.465808	3E-18		0.0317076	[0.025-0.039] unit decrease	Illumina [13476299] (imputed)	N
1603	chr3	133480457	133480458	rs8177260	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3q22.1	NR	rs8177260-T	0.53319	2E-17		0.034897	[0.027-0.043] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1603	chr3	133480816	133480817	rs6762719	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q22.1		rs6762719-?	NR	3E-32				NR [~ 8900000] (imputed)	N
1603	chr3	133480816	133480817	rs6762719	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	3q22.1	TF	rs6762719-A	NR	4E-25		0.149	[0.12-0.18] unit increase	Illumina [27700000] (imputed)	N
1603	chr3	133480816	133480817	rs6762719	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	3q22.1	TF	rs6762719-A	NR	4E-25		0.149	NR unit increase	Illumina [27700000] (imputed)	N
1603	chr3	133480816	133480817	rs6762719	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	TF	rs6762719-A	NR	1E-323		0.676	unit decrease	Illumina [27700000] (imputed)	N
1603	chr3	133484028	133484029	rs3811647	25457201	de Tayrac M	2014-10-18	J Hepatol	Genome-wide association study identifies TF as a significant modifier gene of iron metabolism in HFE hemochromatosis.	Hereditary hemochromatosis-related traits (HFE mutation homozygotes)	474 European ancestry cases	746 European ancestry cases	3q22.1	TF	rs3811647-?	NR	9E-11	(Serum Iron levels)	0.28	[0.20-0.36] unit decrease	Illumina [534213]	N
1603	chr3	133484028	133484029	rs3811647	25457201	de Tayrac M	2014-10-18	J Hepatol	Genome-wide association study identifies TF as a significant modifier gene of iron metabolism in HFE hemochromatosis.	Hereditary hemochromatosis-related traits (HFE mutation homozygotes)	474 European ancestry cases	746 European ancestry cases	3q22.1	TF	rs3811647-?	NR	2E-20	(Trasferrin)	0.4	[0.32-0.48] unit decrease	Illumina [534213]	N
1603	chr3	133484028	133484029	rs3811647	21785125	Traglia M	2011-07-25	J Med Genet	Association of HFE and TMPRSS6 genetic variants with iron and erythrocyte parameters is only in part dependent on serum hepcidin concentrations.	Hepcidin levels	1,657 Val Borbera (founder/genetic isolate) individuals	NA	3q22.1	TF	rs3811647-?	NR	2E-16	(Tf)	0.338	[0.26-0.42] ng/ml increase	Illumina [343866]	N
1603	chr3	133484028	133484029	rs3811647	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	TF	rs3811647-A	0.32	1E-35	(Total transferrin)	0.358	[0.30-0.42] unit increase	Affymetrix [390631] (imputed)	N
1603	chr3	133484028	133484029	rs3811647	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	3q22.1	TF	rs3811647-A	NR	8E-6	(Unsaturated iron-binding capacity)	21.62	[NR] ug/dL increase	Illumina [331060]	N
1603	chr3	133484028	133484029	rs3811647	21483845	McLaren CE	2011-03-31	PLoS One	Genome-wide association study identifies genetic loci associated with iron deficiency.	Iron status biomarkers	336 European ancestry iron deficiency cases, 343 European ancestry controls	71 European ancestry iron deficiency cases, 161 European ancestry controls	3q22.1	TF	rs3811647-A	NR	5E-10	(Total iron-binding capacity)	21.49	[NR] ug/dL increase	Illumina [331060]	N
1603	chr3	133484028	133484029	rs3811647	21208937	Pichler I	2011-01-04	Hum Mol Genet	Identification of a common variant in the TFR2 gene implicated in the physiological regulation of serum iron levels.	Iron status biomarkers	Up to 5,633 European ancestry individuals	Up to 3,457 European ancestry individuals	3q22.1	TF	rs3811647-A	0.29	3E-47	(transferrin)	15.34	[13.26-17.42] mg/dl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1603	chr3	133484028	133484029	rs3811647	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	459 European ancestry twin pairs	NA	3q22.1	TF	rs3811647-?	NR	3E-15	(serum transferrin)	0.46	[0.34-0.58] s.d. decrease	Illumina [315887]	N
1603	chr3	133484392	133484393	rs1358023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.1	NR	rs1358023-C	0.363173	4E-25				Affymetrix, Illumina [21126107] (imputed)	N
1603	chr3	133484392	133484393	rs1358023	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q22.1	NR	rs1358023-C	0.339799	1E-17		0.018065	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1603	chr3	133484392	133484393	rs1358023	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q22.1	TF	rs1358023-C	0.3403	7E-17		0.03109293	[0.024-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133484711	133484712	rs1525892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA		TF	rs1525892-A	0.340292	2E-10		0.0160474	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133484711	133484712	rs1525892	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA		NR	rs1525892-A	0.362049	6E-58				Affymetrix, Illumina [20825802] (imputed)	N
1603	chr3	133490333	133490334	rs6794370	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q22.1		rs6794370-C	NR	1E-10		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
1603	chr3	133490333	133490334	rs6794370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q22.1	TF	rs6794370-C	0.806262	9E-12		0.0282002	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133490333	133490334	rs6794370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	TF	rs6794370-C	0.806282	3E-12		0.021012042	[0.015-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133490620	133490621	rs34252038	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q22.1	TF	rs34252038-T	0.341	7E-12		0.02545329	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133491444	133491445	rs8177297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3q22.1		rs8177297-A	NR	3E-12		0.017	[0.012-0.022] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1603	chr3	133491444	133491445	rs8177297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	3q22.1		rs8177297-A	0.397178	5E-12		0.0254743	[0.018-0.033] unit decrease	Illumina [13477028] (imputed)	N
1603	chr3	133491444	133491445	rs8177297	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	3q22.1	NR	rs8177297-C	0.602264	4E-12		0.028345	[0.02-0.036] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
1603	chr3	133491444	133491445	rs8177297	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	3q22.1	TF	rs8177297-?	NR	3E-8		0.02406	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1603	chr3	133492087	133492088	rs2718798	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	3q22.1	NR	rs2718798-A	NR	7E-6		1.1787		Affymetrix [8183964] (imputed)	N
1603	chr3	133492329	133492335	rs72382362	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q22.1	NR	rs72382362-T	NR	1E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1603	chr3	133492329	133492335	rs72382362	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3q22.1	TF	rs72382362-T	0.5116	6E-9		0.02032941	[0.013-0.027] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1603	chr3	133494353	133494354	rs1049296	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NAALAD2	5,360 Icelandic ancestry individuals	NA	3q22.1		rs1049296-T	0.1643	1E-80		0.46896	[0.42-0.52] unit decrease	Illumina [7506463] (imputed)	N
1603	chr3	133494353	133494354	rs1049296	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	TF	rs1049296-T	0.17	5E-43	(CDT percent)	0.29	[0.25-0.33] unit decrease	Affymetrix [390631] (imputed)	N
1603	chr3	133495460	133495461	rs7638018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA		NR	rs7638018-G	0.338404	2E-17		0.01668	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	3q22.1	TF	rs4854760-G	0.313	1E-82		0.096	[0.11-0.086] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	3q22.1	TF	rs4854760-G	0.313	1E-300		0.34	[0.33-0.36] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (iron levels)	163,511 European ancestry individuals	NA	3q22.1	TF	rs4854760-G	0.313	6E-33		0.053	[0.044-0.062] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q22.1	SRPRB	rs4854760-G	0.340755	4E-13		0.0232442	[0.019-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	SRPRB	rs4854760-G	0.34071	1E-17		0.021326935	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q22.1	NR	rs4854760-A	0.7353125	6E-16	(TF, 4162_54_2)	0.22745943	[0.17-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1603	chr3	133498740	133498741	rs4854760	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q22.1	NR	rs4854760-A	0.7353125	2E-25	(NAALAD2, 7986_98_3)	0.29006043	[0.24-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
1603	chr3	133498788	133498789	rs4854761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q22.1	SRPRB	rs4854761-A	0.340419	3E-15		0.01836411	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1603	chr3	133501406	133501407	rs9843728	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q22.1	TF, SRPRB	rs9843728-?	NR	3E-16		0.03541	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
1603	chr3	133507508	133507509	rs9871148	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3q22.1	SRPRB	rs9871148-C	NR	2E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1603	chr3	133508463	133508464	rs1830084	19084217	Benyamin B	2008-12-17	Am J Hum Genet	Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels.	Iron status biomarkers	411 European ancestry individuals from 150 families	NA	3q22.1	TF	rs1830084-A	0.36	1E-9	(serum transferrin)	0.43	[NR] s.d. increase	Affymetrix [100846]	N
1603	chr3	133517998	133517999	rs6794676	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q22.1	TF	rs6794676-?	NR	3E-6	(lysine)	0.21243167	[0.12-0.3] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1603	chr3	133523972	133523973	rs12490148	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3q22.1	SRPRB	rs12490148-?	NR	4E-14		0.03225	[0.024-0.041] unit decrease novel	Illumina [6108953] (imputed)	N
1603	chr3	133537066	133537067	rs1534166	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q22.1	SRPRB	rs1534166-G	0.276	2E-24	(N-acetylated-alpha-linked acidic dipeptidase 2, NAALAD2.7986.98.3)	0.28	[0.22-0.34] unit decrease	Affymetrix [10572788] (imputed)	N
1603	chr3	133537066	133537067	rs1534166	21665994	Kutalik Z	2011-06-10	Hum Mol Genet	Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.	Alcohol consumption (transferrin glycosylation)	5,181 European ancestry individuals	2,284 European ancestry individauls	3q22.1	SRPRB	rs1534166-A	0.30	2E-17	(CDT concentration)	0.289	[0.22-0.36] unit decrease	Affymetrix [390631] (imputed)	N
1603	chr3	133538014	133538015	rs11707556	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q22.1	NR	rs11707556-G	NR	2E-9		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1604	chr3	133582963	133582964	rs7637997	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.1	RAB6B	rs7637997-G	NR	3E-20		0.165	[0.13-0.2] unit decrease	Illumina [27700000] (imputed)	N
1604	chr3	133589323	133589324	rs9835973	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3q22.1	RAB6B	rs9835973-A		7E-8	(EA)			Illumina [NR]	N
1604	chr3	133597127	133597128	rs140798517	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q22.1	RAB6B	rs140798517-C	0.996	3E-6	(AA)	0.188	unit increase	Illumina [NR] (imputed)	N
1604	chr3	133598674	133598675	rs1917780	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q22.1	RAB6B	rs1917780-C	0.323124	1E-9		0.0144002605	[0.0097-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1604	chr3	133602664	133602665	rs1525886	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q22.1	RAB6B	rs1525886-T	0.318987	2E-12		0.017012311	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1604	chr3	133604742	133604743	rs9813363	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RAB6B	5,364 Icelandic ancestry individuals	NA	3q22.1		rs9813363-A	0.1756	4E-31		0.28438	[0.24-0.33] unit decrease	Illumina [7506463] (imputed)	N
1604	chr3	133604742	133604743	rs9813363	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q22.1	RAB6B	rs9813363-G	0.8253125	1E-17	(RAB6B, 14271_23_3)	0.27805686	[0.21-0.34] unit increase	Illumina [> 1000000] (imputed)	N
1604	chr3	133628938	133628939	rs143087368	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q22.1	Intergenic	rs143087368-G	0.996	4E-6	(AA)	0.187	unit increase	Illumina [NR] (imputed)	N
1604	chr3	133629361	133629362	rs2692685	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q22.1		rs2692685-?	NR	9E-11				NR [~ 8900000] (imputed)	N
1605	chr3	133701118	133701119	rs10049390	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3q22.1	NR	rs10049390-A	0.7228	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [16900397] (imputed)	N
1605	chr3	133701822	133701823	rs9832989	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (hematuria) (time to event)	3,619 European ancestry individuals	538 Japanese ancestry individuals	3q22.1	NR	rs9832989-?	0.06	4E-7	(EA)	4.45	[2.50-7.92]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1605	chr3	133745795	133745796	rs57064586	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	6,581 European ancestry cases, 463,421 European ancestry controls, 8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	3q22.2		rs57064586-C	NR	3E-10		0.0965	[0.067-0.126] unit decrease	Affymetrix, Illumina [25843452] (imputed)	N
1605	chr3	133748788	133748789	rs113569514	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colorectal cancer	8,305 East Asian ancestry cases, 159,386 East Asian ancestry controls	NA	3q22.2		rs113569514-C	0.350389891	6E-9		0.10216772	[0.068-0.137] unit decrease	Illumina [13428297] (imputed)	N
1605	chr3	133748788	133748789	rs113569514	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	3q22.2	SLCO2A1	rs113569514-T	0.62	2E-12		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1605	chr3	133749514	133749515	rs61510274	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	3q22.2		rs61510274-?	0.59	3E-14	(East Asian)	1.1111112	[1.08-1.14]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1605	chr3	133749514	133749515	rs61510274	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	3q22.2	NR	rs61510274-G	NR	1E-6		1.087	[1.051-1.124]	Illumina [6774630] (imputed)	N
1605	chr3	133785176	133785177	rs4546143	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	3q22.2	LOC105374117	rs4546143-?		2E-6		2.39	[1.67-3.43]	Illumina [NR] (imputed)	N
1605	chr3	133814887	133814887	rs71624037	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3q22.2	NR	rs71624037-G	0.926205	6E-11		0.0357903	[0.025-0.046] unit increase	Affymetrix [16580851] (imputed)	N
1605	chr3	133820688	133820689	rs9812461	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q22.2	SLCO2A1, RYK	rs9812461-?	NR	5E-16		0.023167089	[0.018-0.029] unit increase	Illumina [27896057] (imputed)	N
1606	chr3	133877569	133877570	rs4854617	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to temozolomide	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	3q22.2		rs4854617-?	NR	3E-7				Illumina [1510701]	N
1606	chr3	133882150	133882151	rs4470517	34437536	Akhtari FS	2021-08-26	PLoS Genet	High-throughput screening and genome-wide analyses of 44 anticancer drugs in the 1000 Genomes cell lines reveals an association of the NQO1 gene with the response of multiple anticancer drugs.	Response to temozolomide	680 lymphoblastoid cell lines from Han Chinese ancestry, Japanese ancestry, Kenyan ancestry, Mexican ancestry, Tuscan ancestry, Yoruban ancestry, British ancestry, Columbian ancestry individuals	NA	3q22.2		rs4470517-?	NR	7E-7				Illumina [1510701]	N
1606	chr3	133885924	133885925	rs6795164	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 1)	3,566 European ancestry individuals	4,680 European ancestry individuals	3q22.2		rs6795164-A	0.475435149	1E-9				Illumina [7417619] (imputed)	N
1606	chr3	133890994	133890995	rs7431604	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Diastolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q22.2	RYK	rs7431604-T	0.6932	9E-9		0.1719	[0.11-0.23] mmHg increase	Affymetrix [NR] (imputed)	N
1606	chr3	133935636	133935636	rs566608155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q22.2		rs566608155-CAAAAAAA	NR	6E-10		0.0142	[0.0097-0.0187] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1606	chr3	133935636	133935636	rs566608155	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3q22.2		rs566608155-CAAAAAAA	NR	2E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1606	chr3	133940268	133940269	rs563868169	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3q22.2	NR	rs563868169-?	NR	5E-6		0.993333	[0.57-1.42] unit increase	NR [13958389] (imputed)	N
1606	chr3	133941319	133941320	rs1131262	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (ferritin levels)	246,139 European ancestry individuals	NA	3q22.2	RYK	rs1131262-T	0.112	7E-9		0.032	[0.042-0.021] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
1606	chr3	133947046	133947047	rs4682655	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	12,730 European ancestry individuals	NA	3q22.2		rs4682655-?	NR	7E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1607	chr3	133973730	133973731	rs7639683	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.2		rs7639683-?	NR	4E-23				NR [~ 8900000] (imputed)	N
1607	chr3	133985900	133985901	rs11915143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q22.2		rs11915143-?	NR	1E-21				NR [~ 8900000] (imputed)	N
1607	chr3	133993314	133993315	rs4682671	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q22.2		rs4682671-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1607	chr3	134000024	134000025	rs9859176	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Systolic blood pressure	140,882 European ancestry individuals	190,318 European ancestry individuals	3q22.2	RYK	rs9859176-T	0.4	1E-11		0.322	[0.22-0.42] unit increase	Affymetrix [~ 9800000] (imputed)	N
1607	chr3	134002854	134002855	rs13091227	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	3q22.2		rs13091227-A	0.06	2E-6		0.087	[0.052-0.122] unit increase	Illumina [6361597] (imputed)	N
1607	chr3	134005718	134005718	rs11399965	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q22.2	intergenic	rs11399965-T	0.5869	2E-17		0.3065	[0.24-0.38] mmHg decrease	Affymetrix [NR] (imputed)	N
1607	chr3	134005718	134005718	rs11399965	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q22.2	intergenic	rs11399965-T	0.5877	2E-8		0.1525	[0.1-0.205] mmHg decrease	Affymetrix [NR] (imputed)	N
1607	chr3	134019365	134019366	rs4682660	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	3q22.2	NR	rs4682660-G	0.703513	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1607	chr3	134040628	134040629	rs191332118	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q22.2	NR	rs191332118-G		9E-6		0.4689	[0.26-0.68] SD units increase	NR [10700000] (imputed)	N
1607	chr3	134054696	134054697	rs186248261	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3q22.2	NR	rs186248261-?		8E-7	(PCB206)	1.26	[0.75-1.77] unit decrease	Illumina [8736858] (imputed)	N
1607	chr3	134077000	134077001	rs3821705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q22.2	AMOTL2	rs3821705-A	0.643396	3E-9		0.0138667505	[0.0093-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr3	134077000	134077001	rs3821705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q22.2	AMOTL2	rs3821705-A	0.643313	4E-11		0.015330636	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr3	134077000	134077001	rs3821705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q22.2	AMOTL2	rs3821705-A	0.64331	2E-9		0.013977446	[0.0094-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1607	chr3	134077469	134077470	rs1353776	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3q22.2		rs1353776-G	NR	3E-8		0.0138	[0.0089-0.0187] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1607	chr3	134086355	134086356	rs2303635	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3q22.2	AMOTL2	rs2303635-C	0.975	1E-9		6.088	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1607	chr3	134086355	134086356	rs2303635	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	3q22.2	NR	rs2303635-C	0.9926	1E-12		0.8739	[0.63-1.12] unit decrease	Illumina [~ 10600000] (imputed)	N
1608	chr3	134088442	134088443	rs1353778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.2		rs1353778-?	NR	3E-19				NR [~ 8900000] (imputed)	N
1608	chr3	134089757	134089758	rs143351962	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Vertical cup-disc ratio (adjusted for vertical disc diameter)	67,040 British ancestry individuals	NA	3q22.2	AMOTL2	rs143351962-C	0.99	5E-9		0.03	[0.021-0.039] unit decrease	Affymetrix [at least 8002429] (imputed)	N
1608	chr3	134102524	134102525	rs13084312	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3q22.2	NR	rs13084312-A	0.9888	3E-7		12.91	[7.94-17.88] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
1608	chr3	134136062	134136063	rs151313984	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Intake of sweets	21,447 European ancestry individuals	NA	3q22.2	AC010207.1	rs151313984-T	0.01	6E-7		0.24	[0.14-0.34] handful of candies/day increase	Affymetrix [10353649] (imputed)	N
1608	chr3	134138775	134138776	rs115393837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q22.2	NR	rs115393837-G	0.998874	3E-13		0.23292	[0.17-0.3] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1608	chr3	134138775	134138776	rs115393837	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q22.2	NR	rs115393837-G	0.998884	2E-12		0.231255	[0.17-0.3] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1608	chr3	134155666	134155667	rs189919070	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q22.2	NR	rs189919070-?	NR	9E-7		22.822	NR unit increase	Affymetrix [at least 600000] (imputed)	N
1608	chr3	134155666	134155667	rs189919070	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q22.2	NR	rs189919070-?	NR	1E-6	(AA)	22.607119	[13.66-31.56] unit decrease	Affymetrix [at least 600000] (imputed)	N
1608	chr3	134157262	134157263	rs13088645	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.2	HMGB3P13	rs13088645-A	NR	4E-8		0.0173201	[0.011-0.023] unit decrease	Affymetrix [321114] (imputed)	N
1608	chr3	134157262	134157263	rs13088645	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	3q22.2	MIR4788	rs13088645-A	0.4204	2E-7		0.0079	[0.005-0.0108] unit increase	Affymetrix [~ 7740000] (imputed)	N
1608	chr3	134157262	134157263	rs13088645	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q22.2	MIR4788	rs13088645-A	0.424	5E-7		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
1608	chr3	134173533	134173534	rs6805388	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q22.2		rs6805388-C	NR	3E-34		0.017	[0.014-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1608	chr3	134178561	134178562	rs4974480	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q22.2	NR	rs4974480-?	NR	9E-6		0.0263345	[0.015-0.038] unit increase	Illumina [34656550] (imputed)	N
1608	chr3	134191302	134191303	rs6766897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.2	ANAPC13, CEP63	rs6766897-A	0.6818	4E-9	(EA)	0.0268	[0.018-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134191302	134191303	rs6766897	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6766897-?	0.6818	2E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134191626	134191627	rs62269521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.2		rs62269521-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1608	chr3	134191937	134191938	rs9841212	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q22.2	MIR4788, ANAPC13	rs9841212-?	NR	9E-19		0.027835464	[0.022-0.034] unit increase	Illumina [27896057] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6798	9E-9	(EA)	0.0229	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6784	4E-6	(women)	0.0251	[0.015-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6784	1E-9		0.023	[0.016-0.03] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6785	2E-6	(women)	0.0295	[0.017-0.042] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6784	4E-10		0.0272	[0.019-0.036] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-?	0.6784	5E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-?	0.6784	2E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	9E-7	(women)	0.0253	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	2E-7	(men)	0.0321	[0.02-0.044] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	2E-12		0.0283	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	8E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	7E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	4E-7	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	6E-7	(women)	0.0231	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	2E-8	(men)	0.0299	[0.02-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6799	1E-12		0.026	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6849	8E-7	(EA,women)	0.0231	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6849	2E-11	(EA)	0.0242	[0.017-0.031] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1608	chr3	134203346	134203347	rs6772896	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.2	ANAPC13, CEP63	rs6772896-T	0.6849	1E-6	(EA, men)	0.0247	[0.015-0.035] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1609	chr3	134218556	134218557	rs9814567	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	3q22.2	ANAPC13, CEP63	rs9814567-C		2E-6		1.6891892	[NR]	Affymetrix [NR]	N
1609	chr3	134220320	134220321	rs142076474	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3q22.2	CEP63	rs142076474-A	0.994	4E-6	(liability model)	0.58	[0.34-0.82] unit decrease	NR [19725427] (imputed)	N
1609	chr3	134225714	134225715	rs4974479	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q22.2		rs4974479-G	0.839699	8E-17		0.0228488	[0.017-0.028] unit increase	Illumina [13479295] (imputed)	N
1609	chr3	134233091	134233092	rs10935120	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	3q22.2	ANAPC13, CEP63	rs10935120-A	0.33	7E-8		0.06	[0.03-0.09] s.d. decrease (males)	Affymetrix [402951]	N
1609	chr3	134254990	134254991	rs6787371	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q22.2	CEP63	rs6787371-A	NR	3E-8		0.0182151	[0.012-0.025] unit decrease	Affymetrix [323123] (imputed)	N
1609	chr3	134313303	134313304	rs1534025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.2	NR	rs1534025-?	NR	3E-16				Affymetrix [~ 8270000] (imputed)	N
1609	chr3	134315090	134315091	rs9851441	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.2		rs9851441-?	NR	6E-34				NR [~ 8900000] (imputed)	N
1609	chr3	134335992	134335993	rs13064209	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.2	EPHB1, KY	rs13064209-C	NR	1E-10		0.0206269	[0.014-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1609	chr3	134342126	134342127	rs7430034	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.2		rs7430034-C	0.35	2E-8		5.65	z score increase	Affymetrix [9061022] (imputed)	N
1610	chr3	134348929	134348930	rs11915964	28447399	Jia P	2017-04-26	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.	Neurocognitive impairment in HIV-1 infection (dichotomous)	140 African American cases, 167 European ancestry cases, 53 Hispanic cases, 6 cases, 350 African American controls, 276 European ancestry controls, 46 Hispanic controls, 11 controls	NA	3q22.2	KY	rs11915964-T		6E-6		1.6103059	[NR]	Affymetrix [NR]	N
1610	chr3	134358946	134358947	rs6775611	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q22.2		rs6775611-?	NR	2E-16				NR [~ 8900000] (imputed)	N
1610	chr3	134361069	134361070	rs13085889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.2	EPHB1, KY	rs13085889-A	NR	5E-12		0.0240076	[0.017-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1610	chr3	134361069	134361070	rs13085889	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3q22.2	EPHB1, KY	rs13085889-A	NR	3E-11		0.023144	[0.016-0.03] unit decrease	Affymetrix [323858] (imputed)	N
1610	chr3	134370584	134370585	rs7637801	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q22.2	NR	rs7637801-A	0.288783	2E-8		0.0412803	[0.027-0.056] unit increase	Affymetrix [17914406] (imputed)	N
1610	chr3	134372485	134372486	rs9883955	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q22.2	KY	rs9883955-T	0.373	5E-21		0.0184	[0.015-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1610	chr3	134373303	134373304	rs60716777	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3q22.2	EPHB1	rs60716777-A	NR	2E-13		0.0250593	[0.018-0.032] unit decrease	Affymetrix [323858] (imputed)	N
1610	chr3	134379751	134379752	rs6762606	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.2	EPHB1	rs6762606-T	NR	5E-9		0.0200418	[0.013-0.027] unit decrease	Affymetrix [321114] (imputed)	N
1610	chr3	134381228	134381229	rs1982353	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.2	NR	rs1982353-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1610	chr3	134427744	134427745	rs12695617	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	3q22.2	EPHB1	rs12695617-?	NR	4E-10		0.003208	[0.0013-0.0051] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1610	chr3	134428928	134428929	rs775009958	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q22.2	EPHB1	rs775009958-T	0.0011	9E-6		1.7742	[0.99-2.56] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1610	chr3	134428928	134428929	rs775009958	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	3q22.2	EPHB1	rs775009958-T	0.0011	6E-7		1.9674	[1.19-2.74] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1611	chr3	134513355	134513356	rs11918092	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	3q22.2	NR	rs11918092-C	NR	5E-9	(Cox proportional hazards regression model)	216.98	[35.64-1321.13]	Illumina [810622]	N
1611	chr3	134514346	134514347	rs115317731	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Lung cancer	2,479 White British ancestry cases, 272,351 White British ancestry controls	NA	3q22.2		rs115317731-?	NR	7E-7		15.1586	[14.08-16.23]	NR [673172]	N
1611	chr3	134539756	134539757	rs187472012	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.2	EPHB1	rs187472012-A	NR	2E-7		0.75	[0.47-1.03] unit increase	Illumina [27700000] (imputed)	N
1611	chr3	134609875	134609876	rs6767047	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q22.2	NR	rs6767047-?	NR	6E-6				Illumina [7427422] (imputed)	N
1612	chr3	134648117	134648118	rs40157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q22.2		rs40157-C	NR	3E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1612	chr3	134649765	134649766	rs62270313	26220383	Jang HW	2015-06-02	Epilepsy Res	GWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.	Epilepsy and lamotrigine-induced maculopapular eruptions	34 Korean ancestry cases, 1,080 Korean ancestry healthy controls	NA	3q22.2	EPHB1	rs62270313-?	0.05	1E-7		4.6	[NR]	Affymetrix [4893794] (imputed)	N
1612	chr3	134650931	134650932	rs40437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q22.2		rs40437-G	NR	1E-9		0.0115	[0.0078-0.0152] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1612	chr3	134665158	134665159	rs10935143	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q22.2	EPHB1	rs10935143-G	0.551499	1E-9		0.00839848	[0.0057-0.0111] unit increase	Affymetrix [12370749]	N
1612	chr3	134665158	134665159	rs10935143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.2	NR	rs10935143-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1612	chr3	134665158	134665159	rs10935143	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.2		rs10935143-?	NR	6E-10				NR [~ 8900000] (imputed)	N
1612	chr3	134683344	134683345	rs183252871	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q22.2	EPHB1	rs183252871-T	NR	5E-7		0.572	[0.35-0.8] unit increase	Illumina [27700000] (imputed)	N
1612	chr3	134687293	134687294	rs6789372	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q22.2		rs6789372-C	0.753	8E-9		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1612	chr3	134693051	134693052	rs7636504	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q22.2		rs7636504-G	0.649049	2E-8		0.0238592	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
1612	chr3	134694435	134694436	rs11720684	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q22.2		rs11720684-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1612	chr3	134709950	134709951	rs7613213	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	3q22.2	EPHB1	rs7613213-?	NR	4E-6				Illumina [NR]	N
1612	chr3	134709950	134709951	rs7613213	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q22.2	NR	rs7613213-T	0.358873155243431	4E-8		0.009801454	[0.0063-0.0133] unit decrease	NR [NR]	N
1612	chr3	134711546	134711547	rs39697	33713768	Akenroye AT	2021-03-10	J Allergy Clin Immunol	Genome-wide Association study of Asthma, Total IgE, and Lung function in a Cohort of Peruvian Children.	Asthma (childhood onset)	436 Peruvian cases, 291 Peruvian controls	NA	3q22.2		rs39697-?	NR	2E-6		1.8870221	unit increase	Illumina [NR] (imputed)	N
1612	chr3	134729536	134729537	rs4082244	31168069	Ward J	2019-06-05	Mol Psychiatry	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Mood instability	157,039 European ancestry cases, 206,666 European ancestry controls	NA	3q22.2	EPHB1	rs4082244-?	NR	2E-8		0.00674604	[0.0044-0.0091] unit increase	Affymetrix [NR] (imputed)	N
1613	chr3	134804490	134804491	rs114807680	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3q22.2	EPHB1	rs114807680-A	0.019	2E-7		2.71	[1.87-3.95]	Illumina [8672852] (imputed)	N
1613	chr3	134853761	134853762	rs11713704	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.2		rs11713704-T	0.24	1E-11		6.76	z score increase	Affymetrix [9061022] (imputed)	N
1613	chr3	134856296	134856297	rs3821505	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q22.2	NR	rs3821505-T	0.336	3E-9				NR [9056863] (imputed)	N
1614	chr3	134892940	134892941	rs143461983	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q22.2	NR	rs143461983-?	NR	2E-8				Illumina [7760689] (imputed)	N
1614	chr3	134895323	134895324	rs141889680	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		EPHB1	rs141889680-?	NR	3E-11		2.81512	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1614	chr3	134920812	134920813	rs57413366	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.2	NR	rs57413366-G	0.04007	3E-8	(GNMT)	0.6736	NR unit increase	Illumina [1671387] (imputed)	N
1614	chr3	134930939	134930940	rs931726	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	3q22.2	NR	rs931726-T	0.25	6E-7	(EA)	0.056	[0.034-0.078] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1614	chr3	134974528	134974529	rs181744922	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3q22.2	EPHB1	rs181744922-A	NR	3E-6	(daytime napping duration)	0.1091	[0.063-0.155] unit increase	Affymetrix [7141204] (imputed)	N
1615	chr3	135056030	135056031	rs115008546	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	3q22.2	EPHB1, PPP2R3A	rs115008546-A	0.047649	9E-6		0.686073	[0.38-0.99] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1616	chr3	135167676	135167677	rs12494120	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q22.2	NR	rs12494120-A	0.803	6E-9		0.00788833	[0.0052-0.0105] unit increase	NR [9732723] (imputed)	N
1616	chr3	135174847	135174848	rs150900085	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	3q22.2		rs150900085-C	0.007	3E-7		1.58	[1.321-1.883]	Affymetrix, Illumina [NR] (imputed)	N
1616	chr3	135179994	135179995	rs138600791	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Small cell lung carcinoma	2,664 European ancestry cases,  21,444 European ancestry controls	NA	3q22.2	EPHB1, PPP2R3A	rs138600791-C	0.012265263	2E-6		1.8133612	[1.419742717-2.316108819]	Illumina [10439017] (imputed)	N
1616	chr3	135212341	135212342	rs1393320	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Bitter beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	3q22.2	EPHB1	rs1393320-G	0.4515	1E-7		0.0086	[0.0055-0.0117] unit increase	Affymetrix [~ 7740000] (imputed)	N
1616	chr3	135225248	135225249	rs11712655	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q22.2	EPHB1	rs11712655-T	0.72	1E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1616	chr3	135235357	135235358	rs1502172	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q22.2	EPHB1	rs1502172-A	0.34	3E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1617	chr3	135281667	135281668	rs7612415	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	3q22.2	NR	rs7612415-?	NR	9E-7	(FDR adjusted)			Illumina [671038]	N
1617	chr3	135293271	135293272	rs117276818	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	3q22.2		rs117276818-C	0.06617	6E-6		1.71	[1.35599999999999-2.156]	Affymetrix [7975321] (imputed)	N
1618	chr3	135457952	135457953	rs1374773	29698431	Roosenboom J	2018-04-26	PLoS One	Mapping genetic variants for cranial vault shape in humans.	Maximum cranial width	4,419 European ancestry individuals	NA	3q22.2	NR	rs1374773-G	0.12	3E-6		1.084	[0.49-1.68] unit increase	Illumina [at least 567677] (imputed)	N
1618	chr3	135486533	135486534	rs72975629	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q22.2	NR	rs72975629-C	NR	4E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1618	chr3	135496945	135496946	rs9873976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.2	NR	rs9873976-C	NR	2E-9		0.0258	[0.017-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
1619	chr3	135587810	135587811	rs1401543	22216198	Athanasiadis G	2011-12-28	PLoS One	A genome-wide association study of the Protein C anticoagulant pathway.	Anticoagulant levels	397 European ancestry individuals from 21 families	NA	3q22.2	PPP2R3A	rs1401543-?	NR	8E-6	(Total PS)			Illumina [283437]	N
1619	chr3	135625497	135625498	rs9852406	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q22.2	NR	rs9852406-C	0.7464	9E-13		0.0375	[0.027-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1619	chr3	135625600	135625601	rs13065836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.2	NR	rs13065836-A	NR	5E-13		0.0271	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
1619	chr3	135625600	135625601	rs13065836	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.2	NR	rs13065836-A	NR	4E-14		0.0299	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
1619	chr3	135639647	135639648	rs56308637	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q22.2	PPP2R3A	rs56308637-C	0.746645	9E-12		0.00386475	[0.0027-0.005] unit decrease	Affymetrix [13995440] (imputed)	N
1619	chr3	135656189	135656190	rs148874568	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.2	NR	rs148874568-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1619	chr3	135658993	135658994	rs66626713	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q22.2	NR	rs66626713-A	0.352045	2E-11		0.0216907	[0.015-0.028] unit increase	NR [19129689] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	9E-9	(162 ms)	0.0370194	[0.024-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	8E-9	(130 ms)	0.0375932	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	8E-9	(128 ms)	0.0380648	[0.026-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	5E-8	(160 ms)	0.0343592	[0.022-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	3E-8	(152 ms)	0.0365117	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	2E-8	(164 ms)	0.0368434	[0.024-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	2E-8	(154 ms)	0.0373201	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	2E-8	(120 ms)	0.0378783	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135668715	135668716	rs1403767	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q22.2	PPP2R3A	rs1403767-G	0.755032	2E-8	(118 ms)	0.0377155	[0.025-0.05] unit increase	Affymetrix [10000000] (imputed)	N
1620	chr3	135698128	135698129	rs7641070	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q22.2	NR	rs7641070-G	NR	6E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1620	chr3	135721780	135721781	rs34901937	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs34901937-G	NR	5E-14		0.0359	[0.026-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1620	chr3	135726678	135726679	rs6775778	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 40)	19,670 European ancestry individuals	NA	3q22.3		rs6775778-?	NR	1E-9				NR [9705931] (imputed)	N
1620	chr3	135736194	135736195	rs115036960	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3q22.3		rs115036960-T	0.0050343	8E-6		0.21493	[0.12-0.31] unit decrease	Affymetrix [15580782] (imputed)	N
1620	chr3	135737016	135737017	rs73222214	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	3q22.3	NR	rs73222214-?	NR	2E-6		0.3603	[0.22-0.5] unit decrease	Illumina [at least 560000] (imputed)	N
1620	chr3	135761926	135761927	rs7621331	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.3	PPP2R3A	rs7621331-A	0.6804	9E-9	(EA)	0.0207	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1620	chr3	135761926	135761927	rs7621331	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q22.3	PPP2R3A	rs7621331-A	0.6804	5E-8	(EA, men)	0.0276	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1620	chr3	135773468	135773469	rs13097248	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs13097248-?	NR	8E-11				Affymetrix [~ 8270000] (imputed)	N
1620	chr3	135785468	135785469	rs10049233	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q22.3	NR	rs10049233-A	NR	5E-10		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Valine levels	115,052 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768427	9E-9		0.0276111	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	6E-14		0.0370394	[0.027-0.047] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	9E-15		0.0377742	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	4E-16		0.039676	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Leucine levels	115,078 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768418	3E-8		0.0261434	[0.017-0.035] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	1E-14		0.0377822	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	9E-16		0.0390638	[0.03-0.049] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	4E-16		0.0399056	[0.03-0.05] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	1E-13		0.0360567	[0.027-0.046] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	4E-14		0.0371756	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	2E-14		0.0371746	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34894639-C	0.768422	7E-13		0.0354863	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	3q22.3	PPP2R3A	rs34894639-T	0.230873	1E-10		0.238303	[0.17-0.31] unit decrease	Affymetrix [9463307] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	3q22.3	PPP2R3A	rs34894639-T	0.230873	2E-15		0.019973	[0.015-0.025] unit decrease	Affymetrix [9463307] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Systolic blood pressure	291,107 British ancestry individuals	NA	3q22.3	PPP2R3A	rs34894639-T	0.230873	8E-7		0.281852	[0.17-0.39] unit decrease	Affymetrix [9463307] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	3q22.3	PPP2R3A	rs34894639-T	0.230873	1E-14		0.00838567	[0.0063-0.0105] unit increase	Affymetrix [9463307] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs34894639-C	NR	4E-7		0.023	unit increase	Affymetrix [at least 7091467] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs34894639-C	0.758	7E-7	(EA)	0.025	unit increase	Affymetrix [at least 7091467] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs34894639-C	0.758	6E-6	(EA)	0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1621	chr3	135798657	135798658	rs34894639	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	3q22.3	MSL2L1	rs34894639-C	0.78	8E-9		0.042	[0.028-0.056] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1621	chr3	135800408	135800409	rs34330586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34330586-A	0.768802	5E-20		0.0442645	[0.035-0.054] unit increase	NR [11722792] (imputed)	N
1621	chr3	135800408	135800409	rs34330586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34330586-A	0.768802	2E-24		0.0494009	[0.04-0.059] unit increase	NR [11722792] (imputed)	N
1621	chr3	135800408	135800409	rs34330586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs34330586-A	0.768802	3E-18		0.0420716	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
1621	chr3	135800408	135800409	rs34330586	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs34330586-A	0.768802	3E-18		0.0422487	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
1621	chr3	135804549	135804550	rs61791721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs61791721-T	0.768741	5E-9		0.027767	[0.018-0.037] unit increase	NR [11722792] (imputed)	N
1621	chr3	135804549	135804550	rs61791721	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs61791721-T	0.768741	1E-11		0.0322936	[0.023-0.042] unit increase	NR [11722792] (imputed)	N
1621	chr3	135804549	135804550	rs61791721	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.3	NR	rs61791721-?	NR	7E-16				Affymetrix [~ 8270000] (imputed)	N
1621	chr3	135807608	135807609	rs9810089	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth (child effect)	1,109 Norwegian ancestry children	NA	3q22.3	NR	rs9810089-C		9E-6				NR [525577]	N
1621	chr3	135809729	135809730	rs116090319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs116090319-A	NR	4E-17		0.0623	[0.048-0.077] unit increase	Affymetrix [9000000] (imputed)	N
1621	chr3	135809729	135809730	rs116090319	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q22.3	NR	rs116090319-A	NR	5E-12		0.0489	[0.035-0.063] unit decrease	Affymetrix [9000000] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs bipolar disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 20,352 bipolar disorder cases	NA	3q22.3		rs1278493-?	NR	1E-8		0.0135	NR unit increase	NR [4548414] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on highest math class (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q22.3		rs1278493-?	NR	1E-8				NR [NR]	N
1621	chr3	135814008	135814009	rs1278493	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3q22.3	PPP2R3A	rs1278493-G	NR	2E-8		0.009871	[0.0064-0.0133] unit increase	Affymetrix [18485882] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q22.3	NR	rs1278493-G	0.44	4E-9		0.011	[0.0075-0.0145] unit increase	Affymetrix [2446094] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q22.3	NR	rs1278493-G	0.44	5E-8				Affymetrix [2446094] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3q22.3	PPP2R3A	rs1278493-G	0.436	9E-9		1.04	[1.03-1.05]	Illumina [34740186] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q22.3	NR	rs1278493-A	0.42933	4E-8		5.5	z score increase	NR [10847151] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	NR	rs1278493-A	0.42933	8E-10		6.14	z score increase	NR [10847151] (imputed)	N
1621	chr3	135814008	135814009	rs1278493	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs1278493-A	0.57067	2E-12		7.072	z score increase	Illumina [18485882] (imputed)	N
1621	chr3	135819933	135819934	rs6793835	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q22.3		rs6793835-A	NR	4E-27		0.0282	[0.023-0.033] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1621	chr3	135820264	135820265	rs9870122	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.3	PPP2R3A	rs9870122-G	NR	2E-9		0.0209261	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1621	chr3	135822923	135822924	rs34864445	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q22.3	PPP2R3A	rs34864445-C	0.7296	1E-9		0.0927	[0.062-0.124] unit increase	Affymetrix [~ 11900000] (imputed)	N
1621	chr3	135838597	135838598	rs13088093	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	3q22.3	NR	rs13088093-G	NR	8E-12		0.906	unit increase	Affymetrix [14661600] (imputed)	N
1621	chr3	135843161	135843162	rs9840812	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	3q22.3	PPP2R3A	rs9840812-C	0.23	2E-27		0.0117	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
1621	chr3	135846830	135846831	rs13082532	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.3	NR	rs13082532-?	NR	2E-13				Affymetrix [~ 8270000] (imputed)	N
1621	chr3	135846910	135846911	rs2400727	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q22.3	PPP2R3A	rs2400727-G	0.745715	2E-10		1.06	[1.04-1.08]	NR [8126035] (imputed)	N
1621	chr3	135856518	135856519	rs148241411	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	3q22.3	NR	rs148241411-?	NR	3E-6		0.3689	[0.22-0.52] unit decrease	Illumina [at least 560000] (imputed)	N
1621	chr3	135861665	135861666	rs9881400	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q22.3	PPP2R3A	rs9881400-T	0.270861	1E-9		0.015101085	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1621	chr3	135872957	135872958	rs7372313	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q22.3		rs7372313-?	NR	7E-9				NR [NR]	N
1621	chr3	135874929	135874930	rs28519617	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q22.3	NR	rs28519617-G	0.2703	1E-23		0.002542	[0.002-0.003] unit increase	Affymetrix [NR] (imputed)	N
1621	chr3	135878633	135878634	rs35837273	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.3		rs35837273-C	0.14	2E-14		7.66	z score increase	Affymetrix [9061022] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	4E-21		0.0475179	[0.038-0.057] unit increase	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	2E-16		0.0420444	[0.032-0.052] unit increase	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	6E-17		0.0416995	[0.032-0.051] unit increase	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of HDL particles	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	5E-9		0.0288121	[0.019-0.038] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	2E-15		0.0416666	[0.031-0.052] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	1E-22		0.0497599	[0.04-0.06] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	2E-12		0.034245	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	1E-10		0.0305002	[0.021-0.04] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	6E-21		0.0469953	[0.037-0.057] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	8E-11		0.0332248	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs9647335-A	0.807997	3E-11		0.0320677	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q22.3		rs9647335-T	NR	1E-22		0.0279	[0.022-0.034] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1621	chr3	135880409	135880410	rs9647335	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q22.3	MSL2	rs9647335-A	0.808074	2E-30		0.0277611	[0.023-0.033] unit decrease	Affymetrix [NR] (imputed)	N
1621	chr3	135881487	135881488	rs35352346	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q22.3	MSL2	rs35352346-A	0.27219	3E-9		0.014812015	[0.0099-0.0197] unit increase	Affymetrix [93095623] (imputed)	N
1621	chr3	135888641	135888642	rs73222236	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q22.3	MSL2	rs73222236-A	0.6673	1E-8		0.0385	[0.025-0.052] unit decrease	NR [8041861] (imputed)	N
1621	chr3	135894200	135894201	rs34663683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q22.3		rs34663683-C	NR	4E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1621	chr3	135901269	135901270	rs6439629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.3		rs6439629-?	NR	4E-57				NR [~ 8900000] (imputed)	N
1621	chr3	135907212	135907213	rs6779146	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q22.3		rs6779146-C	NR	8E-9		0.0135	[0.009-0.018] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1621	chr3	135908785	135908786	rs10935179	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs10935179-T	NR	7E-12		0.0542	[0.039-0.07] unit increase	Affymetrix [9000000] (imputed)	N
1621	chr3	135914475	135914476	rs9845457	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs ADHD (ordinary least squares (OLS))	40,675 schizophrenia cases, 19,099 ADHD cases	NA	3q22.3		rs9845457-?	NR	2E-8		0.0193	NR unit decrease	NR [4428082] (imputed)	N
1621	chr3	135917626	135917627	rs61789561	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycine levels	114,978 European ancestry individuals	NA	3q22.3		rs61789561-G	0.804066	4E-8		0.0268925	[0.017-0.037] unit decrease	NR [11722792] (imputed)	N
1621	chr3	135917626	135917627	rs61789561	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q22.3	MSL2	rs61789561-G	0.80409	9E-37		0.0313064	[0.026-0.036] unit decrease	Affymetrix [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	3q22.3		rs1154988-T	0.226769	2E-12		0.0348818	[0.025-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q22.3		rs1154988-A	NR	3E-82		0.0461	[0.041-0.051] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q22.3	MSL2, PCCB	rs1154988-?	NR	7E-15		0.0460383	[0.034-0.058] unit increase	Illumina [4804024] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	6E-13				Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	1E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	7E-14	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	2E-13				Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q22.3	MSL2, PCCB	rs1154988-A	NR	1E-7	(EA)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	7E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	6E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	9E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	3E-14				Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	4E-16				Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q22.3	MSL2, PCCB	rs1154988-A	NR	1E-16	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q22.3	MSL2, PCCB	rs1154988-A	NR	4E-9	(EA)	0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q22.3	MSL2, PCCB	rs1154988-A	NR	2E-6		0.005	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q22.3		rs1154988-?	NR	1E-18				NR [~ 8900000] (imputed)	N
1622	chr3	135925190	135925191	rs1154988	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	3q22.3	MSL2, PCCB	rs1154988-A	0.78	1E-16	(EA)	0.01	[0.008-0.012] unit decrease	Affymetrix, Illumina [2515567] (imputed)	N
1622	chr3	135926621	135926622	rs645040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs645040-G	0.226899	1E-24		0.0492119	[0.04-0.059] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135926621	135926622	rs645040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q22.3		rs645040-G	0.226899	2E-25		0.0517223	[0.042-0.061] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135926621	135926622	rs645040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q22.3		rs645040-G	0.226899	2E-25		0.0500255	[0.041-0.059] unit increase	NR [11722792] (imputed)	N
1622	chr3	135926621	135926622	rs645040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs645040-G	0.226899	1E-12		0.0351583	[0.025-0.045] unit increase	NR [11722792] (imputed)	N
1622	chr3	135926621	135926622	rs645040	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs645040-G	0.226899	2E-9		0.0297593	[0.02-0.039] unit increase	NR [11722792] (imputed)	N
1622	chr3	135926621	135926622	rs645040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q22.3		rs645040-T	NR	9E-33		0.029	[0.024-0.034] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1622	chr3	135926621	135926622	rs645040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	3q22.3		rs645040-T	0.819004	1E-8		0.0252287	[0.017-0.034] unit increase	Illumina [13478866] (imputed)	N
1622	chr3	135926621	135926622	rs645040	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q22.3	MSL2	rs645040-G	0.22691	1E-31		0.00539967	[0.0045-0.0063] unit decrease	Affymetrix [13995440] (imputed)	N
1622	chr3	135926621	135926622	rs645040	33730874	Said MA	2021-03-18	Arterioscler Thromb Vasc Biol	Genome-Wide Association Study and Identification of a Protective Missense Variant on Lipoprotein(a) Concentration: Protective Missense Variant on Lipoprotein(a) Concentration.	Lipoprotein (a) levels	348,591 European ancestry individuals, 6,000 African ancestry individuals, 9,116 Asian ancestry individuals, 7,505 individuals		3q22.3	MSL2	rs645040-G	NR	5E-22		0.016408	[0.012-0.021] nmol/l increase	NR [19000000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q22.3	MSL2, PCCB	rs645040-T	0.77	3E-29		11.2	z-score increase	Affymetrix [4312306] (imputed)	N
1622	chr3	135926621	135926622	rs645040	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Serum alkaline phosphatase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3q22.3	MSL2, PCCB	rs645040-?		1E-8		0.0289	[0.019-0.039] unit decrease	Illumina [31500000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3q22.3	MSL2, PCCB	rs645040-?		2E-10		0.0278	[0.019-0.036] unit decrease	Illumina [31500000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q22.3	NR	rs645040-G	0.226764	2E-35		0.0432646	[0.036-0.05] unit increase	Affymetrix [16577313] (imputed)	N
1622	chr3	135926621	135926622	rs645040	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3q22.3	MSL2	rs645040-G	0.22559	5E-8		0.039162196	[0.025-0.053] unit decrease	Affymetrix [7288503] (imputed)	N
1622	chr3	135926621	135926622	rs645040	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	3q22.3	MSL2	rs645040-G	0.225004	2E-10		0.042834025	[0.03-0.056] unit decrease	Affymetrix [7288503] (imputed)	N
1622	chr3	135926621	135926622	rs645040	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q22.3	NA	rs645040-T	0.7704	1E-14		0.0156	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q22.3	NR	rs645040-T	0.7704	1E-14		0.0156	[0.012-0.02] unit increase	NR [~ 27400000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q22.3	NA	rs645040-T	0.7703	1E-21		0.0186	[0.015-0.022] unit increase	NR [~ 27400000] (imputed)	N
1622	chr3	135926621	135926622	rs645040	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs645040-G	NR	4E-6		0.021	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1622	chr3	135926621	135926622	rs645040	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs645040-G	0.229	2E-6	(EA)	0.024	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1622	chr3	135926621	135926622	rs645040	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	3q22.3	MSL2, PCCB	rs645040-?	NR	4E-8		0.02724	[0.018-0.037] unit increase	Illumina [6108953] (imputed)	N
1622	chr3	135926621	135926622	rs645040	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or triglyceride levels (pleiotropy)	65,000 individuals (C-reactive protein), 96,598 individuals (triglycerides)	NA	3q22.3	MSL2L1	rs645040-T	NR	5E-11				NR [25015711] (imputed)	N
1622	chr3	135926621	135926622	rs645040	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	3q22.3	MSL2L1	rs645040-G	0.23	2E-12		0.029	[NR] mg/dL decrease	NR [NR] (imputed)	N
1622	chr3	135926621	135926622	rs645040	20686565	Teslovich TM	2010-08-05	Nature	Biological, clinical and population relevance of 95 loci for blood lipids.	Triglycerides	96,598 European ancestry individuals	NA	3q22.3	MSL2L1	rs645040-G	0.22	3E-8		2.22	[1.34-3.1] mg/dL decrease	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1622	chr3	135931585	135931586	rs3905668	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q22.3		rs3905668-G	0.23	5E-13		7.22	z score increase	Affymetrix [9061022] (imputed)	N
1622	chr3	135931585	135931586	rs3905668	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q22.3		rs3905668-G	NR	7E-21		0.0258	[0.021-0.031] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1622	chr3	135931585	135931586	rs3905668	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q22.3	NR	rs3905668-G	0.2708	3E-13				NR [9056863] (imputed)	N
1622	chr3	135931585	135931586	rs3905668	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q22.3	MSL2	rs3905668-A	0.7226	8E-14		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1622	chr3	135932358	135932359	rs687339	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q22.3		rs687339-T	NR	1E-18		0.0229	[0.018-0.028] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1622	chr3	135932358	135932359	rs687339	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q22.3	MSL2	rs687339-C	0.228354	1E-44		0.00377204	[0.0032-0.0043] unit decrease	Affymetrix [13995440] (imputed)	N
1622	chr3	135932358	135932359	rs687339	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q22.3	MSL2, PCCB	rs687339-T	0.77	2E-26		10.6	z-score increase	Affymetrix [4311822] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q22.3	NR	rs687339-C	0.227746	1E-175		0.0273541	[0.025-0.029] unit increase	Affymetrix [16582909] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q22.3	NR	rs687339-C	0.227041	5E-104		0.0307699	[0.028-0.034] unit increase	Affymetrix [16585854] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q22.3	NR	rs687339-C	0.228467	5E-84		0.0249825	[0.022-0.028] unit increase	Affymetrix [16582621] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q22.3	NR	rs687339-C	0.227746	4E-182		0.0311993	[0.029-0.033] unit increase	Affymetrix [16582965] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q22.3	NR	rs687339-C	0.227041	5E-102		0.0355807	[0.032-0.039] unit increase	Affymetrix [16585866] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q22.3	NR	rs687339-C	0.228467	1E-87		0.027552	[0.025-0.03] unit increase	Affymetrix [16582614] (imputed)	N
1622	chr3	135932358	135932359	rs687339	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3q22.3	NR	rs687339-T	0.772974	4E-39		0.0395716	[0.034-0.045] unit increase	Affymetrix [16585745] (imputed)	N
1622	chr3	135932358	135932359	rs687339	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q22.3	NR	rs687339-C	0.227837	1E-25		0.0257586	[0.021-0.031] unit increase	NR [NR]	N
1622	chr3	135932358	135932359	rs687339	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	3q22.3	MSL2	rs687339-T	0.78	3E-10	(BMI-adjusted)	0.03	[0.02-0.04] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1622	chr3	135932358	135932359	rs687339	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	3q22.3	MSL2L1	rs687339-T	0.766	2E-12	(Trans-ethnic initial)	0.0291	[0.021-0.037] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
1622	chr3	135932493	135932494	rs35320690	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q22.3		rs35320690-C	NR	3E-37		0.0236	[0.02-0.027] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1622	chr3	135932493	135932494	rs35320690	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q22.3	MSL2	rs35320690-T	0.7258	8E-14		0.0025	[0.0017-0.0033] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1622	chr3	135932493	135932494	rs35320690	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q22.3	MSL2	rs35320690-T	0.7247	5E-21		0.0087	[0.0069-0.0105] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1622	chr3	135933263	135933264	rs1279831	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on Townsend deprivation index (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q22.3		rs1279831-?	NR	3E-8				NR [NR]	N
1622	chr3	135933745	135933746	rs73222243	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.3	RP11-463H24.1	rs73222243-C	NR	3E-8		0.0175232	[0.011-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1622	chr3	135933745	135933746	rs73222243	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3q22.3	STAG1	rs73222243-?	NA	1E-11		2.1	[1.49-2.71] unit increase	Affymetrix [5541230] (imputed)	N
1622	chr3	135933745	135933746	rs73222243	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Triglyceride levels	291,107 British ancestry individuals	NA	3q22.3	KRT18P35	rs73222243-C	0.277275	2E-10		0.0149498	[0.01-0.02] unit increase	Affymetrix [9463307] (imputed)	N
1622	chr3	135936452	135936453	rs525773	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	RP11-463H24.1	rs525773-A	NR	1E-13		0.0211195	[0.016-0.027] unit increase	Affymetrix [321114] (imputed)	N
1622	chr3	135936452	135936453	rs525773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.3	NR	rs525773-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1622	chr3	135936452	135936453	rs525773	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs525773-?	NR	1E-22				Affymetrix [~ 8270000] (imputed)	N
1622	chr3	135936452	135936453	rs525773	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3q22.3	NR	rs525773-A	NR	1E-10		0.01542	[0.011-0.02] unit decrease	Affymetrix [10847151] (imputed)	N
1622	chr3	135936452	135936453	rs525773	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q22.3	NR	rs525773-A	NR	9E-11		6.489	z score decrease	Affymetrix [10847151] (imputed)	N
1622	chr3	135939231	135939232	rs372030255	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q22.3	MSL2	rs372030255-?	NR	6E-10		0.385	[0.26-0.51] unit decrease	Illumina [34656550] (imputed)	N
1622	chr3	135939231	135939232	rs372030255	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q22.3	MSL2	rs372030255-?	NR	2E-7	(Native Hawaiian)	0.4635256	[0.29-0.64] unit decrease	Illumina [34656550] (imputed)	N
1622	chr3	135939585	135939586	rs9818740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	3q22.3		rs9818740-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1622	chr3	135948725	135948726	rs61789599	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.3	PCCB	rs61789599-G	NR	1E-9		0.0172647	[0.012-0.023] unit decrease	Affymetrix [321169] (imputed)	N
1622	chr3	135949736	135949737	rs863930	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q22.3	PCCB	rs863930-A	0.5359	3E-11		0.1629	[0.11-0.21] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1622	chr3	135950920	135950921	rs511154	20031576	Dehghan A	2009-04-01	Circ Cardiovasc Genet	Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.	Fibrinogen	22,096 European ancestry individuals	17,686 European ancestry female individuals	3q22.3	PCCB	rs511154-A	0.22	6E-10		0.05	[0.03-0.06] g/L increase	Affymetrix, Illumina [~ 2661766] (imputed)	N
1622	chr3	135951113	135951113	rs5852840	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	3q22.3		rs5852840-C	0.270389	3E-16		0.038356	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135951490	135951491	rs632251	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q22.3		rs632251-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1622	chr3	135953219	135953220	rs9826454	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3q22.3	NR	rs9826454-A	0.198807	5E-8		0.042866226	[0.027-0.058] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1622	chr3	135954978	135954979	rs61789601	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	3q22.3	PCCB	rs61789601-T	0.202909	8E-17		0.06837171	[0.052-0.084] unit decrease	Affymetrix [9463307] (imputed)	N
1622	chr3	135955603	135955604	rs895893	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs895893-C	0.233089	2E-12		0.0333334	[0.024-0.043] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	3E-15		0.0370494	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-23		0.0458496	[0.037-0.055] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	6E-14		0.0359089	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	6E-18		0.0404272	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	1E-24		0.0487465	[0.039-0.058] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	1E-12		0.0331455	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-14		0.0361841	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	9E-18		0.0407077	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-13		0.0340075	[0.025-0.043] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-13		0.0350933	[0.026-0.044] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	3E-15		0.0372254	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	5E-14		0.0353714	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-12		0.0327062	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	5E-14		0.0354796	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-15		0.0375079	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	3q22.3		rs684773-A	0.232931	3E-16		0.0371086	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of omega-6 fatty acids to total fatty acids	115,006 European ancestry individuals	NA	3q22.3		rs684773-A	0.232931	1E-13		0.0347116	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	5E-10		0.0302865	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	3q22.3		rs684773-A	0.232926	2E-18		0.0416302	[0.032-0.051] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-15		0.037466	[0.028-0.047] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-14		0.0361037	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-14		0.0354673	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	3E-17		0.0398109	[0.031-0.049] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	8E-19		0.041233	[0.032-0.05] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-14		0.0351378	[0.026-0.044] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	7E-16		0.038106	[0.029-0.047] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-13		0.0346061	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	1E-14		0.0361897	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-14		0.0357905	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-13		0.0345131	[0.025-0.044] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-15		0.0372847	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	2E-10		0.0290379	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	5E-17		0.0395436	[0.03-0.049] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	5E-9		0.0269483	[0.018-0.036] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	8E-15		0.0373027	[0.028-0.047] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	7E-25		0.0488461	[0.04-0.058] unit increase	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	7E-15		0.0371204	[0.028-0.046] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	6E-14		0.0358852	[0.027-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs684773-A	0.232925	4E-16		0.0383381	[0.029-0.048] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135956304	135956305	rs684773	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q22.3		rs684773-C	NR	9E-27		0.026	[0.021-0.031] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1622	chr3	135956304	135956305	rs684773	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q22.3	PCCB	rs684773-A	0.233201	3E-35		0.0291315	[0.025-0.034] unit decrease	Affymetrix [NR] (imputed)	N
1622	chr3	135961030	135961031	rs534944	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs534944-T	0.232728	1E-18		0.0421402	[0.033-0.052] unit increase	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	2E-18		0.041682	[0.032-0.051] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	3E-17		0.0402924	[0.031-0.05] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	5E-20		0.0439174	[0.035-0.053] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	2E-8		0.0262916	[0.017-0.035] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	2E-19		0.0431819	[0.034-0.053] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135965887	135965888	rs523118	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	3q22.3		rs523118-T	0.232968	1E-25		0.0500566	[0.041-0.059] unit decrease	NR [11722792] (imputed)	N
1622	chr3	135969754	135969755	rs548288	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		3q22.3	PCCB	rs548288-?	NR	7E-21		0.0113	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
1622	chr3	135974215	135974216	rs9844666	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	3q22.3	PCCB	rs9844666-G	NR	3E-8		0.00814645	[0.0053-0.011] unit increase	Affymetrix [10061374] (imputed)	N
1622	chr3	135974215	135974216	rs9844666	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q22.3	PCCB	rs9844666-A	0.25	4E-9		0.024	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1622	chr3	135979697	135979698	rs589092	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3q22.3	NR	rs589092-A	NR	1E-8		0.01372	[0.009-0.0184] unit increase	Affymetrix [10847151] (imputed)	N
1622	chr3	135982096	135982096	rs372863955	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q22.3		rs372863955-G	0.195152	8E-10		0.030578	[0.021-0.04] unit increase	NR [11722792] (imputed)	N
1622	chr3	135986977	135986978	rs60614489	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3q22.3	Intergenic	rs60614489-A	0.6615	5E-8		0.0164	[0.011-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1622	chr3	135992644	135992645	rs12488721	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q22.3	NR	rs12488721-C	0.414076654215732	3E-11		0.012797436	[0.009-0.0166] unit decrease	NR [NR]	N
1622	chr3	135992644	135992645	rs12488721	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q22.3	NR	rs12488721-T	0.406569	2E-9		6.03	z score increase	NR [10847151] (imputed)	N
1622	chr3	135992644	135992645	rs12488721	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs12488721-T	0.59343	3E-14		7.622	z score increase	Illumina [18485882] (imputed)	N
1622	chr3	135996101	135996102	rs35316359	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q22.3	PCCB	rs35316359-A	0.9806	9E-7		0.1317	[0.079-0.184] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1622	chr3	136000745	136000746	rs9843801	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	3q22.3		rs9843801-C	0.3414	6E-10		0.01601	[0.011-0.021] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
1622	chr3	136005791	136005792	rs7653249	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q22.3	PCCB	rs7653249-?	NR	1E-22		0.0296	[0.024-0.035] unit decrease	Affymetrix [5701386] (imputed)	N
1622	chr3	136020453	136020454	rs71336055	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	HDL cholesterol levels	115,082 European ancestry individuals	NA	3q22.3		rs71336055-C	0.880275	3E-9		0.0336677	[0.023-0.045] unit decrease	NR [11722792] (imputed)	N
1622	chr3	136020540	136020541	rs1711171	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total bilirubin levels	110,207 Japanese ancestry individuals	NA	3q22.3	PCCB	rs1711171-?	NR	2E-16		0.04514	[0.034-0.056] unit decrease novel	Illumina [6108953] (imputed)	N
1622	chr3	136021051	136021052	rs34153877	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Non-word reading	3,409 European ancestry individuals	NA	3q22.3	PCCB	rs34153877-C	0.811928571	7E-6		0.181421	[0.1-0.26] unit increase	Illumina [6969139] (imputed)	N
1622	chr3	136028986	136028987	rs480330	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3q22.3	NR	rs480330-T	NR	1E-11		0.01695	[0.012-0.022] unit decrease	Affymetrix [10847151] (imputed)	N
1622	chr3	136037226	136037227	rs553018	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	124,341 East Asian ancestry individuals	NA	3q22.3		rs553018-C	0.769644	3E-16		0.0377609	[0.029-0.047] unit decrease	Illumina [13476323] (imputed)	N
1622	chr3	136038197	136038198	rs35522825	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q22.3	PCCB	rs35522825-T	0.1411	3E-6		0.0458	[0.027-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1622	chr3	136047976	136047977	rs483465	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs483465-A	NR	8E-6		0.019	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1622	chr3	136047976	136047977	rs483465	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q22.3	NR	rs483465-A	0.252	4E-6	(EA)	0.022	unit decrease	Affymetrix [at least 7091467] (imputed)	N
1622	chr3	136047976	136047977	rs483465	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	HDL cholesterol	up to 62,166 European ancestry individuals	NA	3q22.3	MSL2L1	rs483465-A	0.21	4E-10		0.045	[0.031-0.059] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
1622	chr3	136049625	136049625	rs60935030	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q22.3		rs60935030-TAATTA	NR	2E-37		0.0286	[0.024-0.033] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1623	chr3	136065564	136065565	rs9832813	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs9832813-A	NR	3E-8		5.563	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1623	chr3	136067777	136067778	rs696516	35047847	Miao Z	2021-08-24	HGG Adv	Identification of 90 NAFLD GWAS loci and establishment of NAFLD PRS and causal role of NAFLD in coronary artery disease.	Nonalcoholic fatty liver disease (imputed)	28,396 European ancestry cases, 108,652 European ancestry controls	NA	3q22.3		rs696516-?	NR	4E-8		0.00565377	[0.0036-0.0077] unit decrease	NR [NR]	N
1623	chr3	136067777	136067778	rs696516	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q22.3	NR	rs696516-G	0.2656	1E-9		0.00845398	[0.0056-0.0113] unit increase	Affymetrix [16578495] (imputed)	N
1623	chr3	136069471	136069472	rs667920	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q22.3	NR	rs667920-G	0.2332	6E-13		0.0324	[0.024-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1623	chr3	136069471	136069472	rs667920	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q22.3	STAG1	rs667920-T	0.7751	6E-15		0.0489	[0.037-0.061] unit increase	Affymetrix [at least 7947838] (imputed)	N
1623	chr3	136073919	136073920	rs6770476	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3q22.3	STAG1	rs6770476-C	0.289	9E-9		0.0154	[0.01-0.021] unit decrease	NR [NR]	N
1623	chr3	136073919	136073920	rs6770476	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q22.3	NR	rs6770476-T	NR	1E-8		5.724	z score increase	Affymetrix [10847151] (imputed)	N
1623	chr3	136080536	136080537	rs1711161	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	Triglyceride levels x long total sleep time interaction (2df test)	at least 2,926 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, at least 7,664 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,906 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 31,986 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 317 East Asian ancestry long sleepers, up to 5,171 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 928 African American controls, 1,301 East Asian ancestry controls, up to 20,961 European ancestry controls, 10,064 Hispanic controls	3q22.3	PCCB	rs1711161-?	NR	7E-11		0.01078	[0.0064-0.0151] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
1623	chr3	136097575	136097576	rs655836	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q22.3	NR	rs655836-C	0.43284621863089	4E-8		0.005101906	[0.0033-0.0069] unit decrease	NR [NR]	N
1623	chr3	136097575	136097576	rs655836	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q22.3	NR	rs655836-T	NR	8E-15		7.768	z score increase	Affymetrix [10847151] (imputed)	N
1623	chr3	136098407	136098408	rs10935181	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	SLC35G2	rs10935181-A	0.424096	1E-12		7.12	z score decrease	NR [10847151] (imputed)	N
1623	chr3	136103266	136103267	rs655720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	3q22.3		rs655720-C	0.281183	2E-10		0.0282098	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
1623	chr3	136103266	136103267	rs655720	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	3q22.3		rs655720-C	0.281183	1E-11		0.0299513	[0.021-0.039] unit increase	NR [11722792] (imputed)	N
1623	chr3	136103266	136103267	rs655720	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x long total sleep time interaction (2df test)	2,933 African American long sleepers, 364 Chinese ancestry long sleepers, 112 Asian ancestry long sleepers, up to 7,870 European ancestry long sleepers, 1,038 Hispanic/Latino long sleepers, up to 11,975 African American controls, 1,449 Chinese ancestry controls, 454 Asian ancestry controls, at least 32,171 European ancestry controls, 4,091 Hispanic/Latino controls	at least 217 African American long sleepers, 616 East Asian ancestry long sleepers, up to 9,486 European ancestry long sleepers, 2,515 Hispanic long sleepers, at least 929 African American controls, 2,517 East Asian ancestry controls, up to 38,126 European ancestry controls, 10,063 Hispanic controls	3q22.3	PCCB	rs655720-?	NR	2E-14		0.006354	[0.0044-0.0083] unit decrease	Affymetrix, Illumina [up to 2533153] (imputed)	N
1623	chr3	136103266	136103267	rs655720	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q22.3	STAG1	rs655720-T	0.72	8E-12		0.049	[0.035-0.063] unit increase	Affymetrix [7947838] (imputed)	N
1623	chr3	136107548	136107549	rs9880211	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	STAG1	rs9880211-A	0.246	6E-7	(EA)	0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1623	chr3	136107548	136107549	rs9880211	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	STAG1	rs9880211-A	0.245	5E-7	(EA, women)	0.023	[0.014-0.032] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1623	chr3	136107548	136107549	rs9880211	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	STAG1	rs9880211-A	0.243	2E-7		0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1623	chr3	136107548	136107549	rs9880211	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q22.3	STAG1	rs9880211-A	0.248	2E-18		0.03	[0.024-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1623	chr3	136121599	136121600	rs28478252	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	3q22.3		rs28478252-A	0.245026	1E-9		0.0289551	[0.02-0.038] unit increase	NR [11722792] (imputed)	N
1623	chr3	136121599	136121600	rs28478252	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q22.3	STAG1	rs28478252-?	NR	4E-11		0.0197	[0.014-0.025] unit decrease	Affymetrix [5701386] (imputed)	N
1623	chr3	136125678	136125678	rs151105710	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q22.3	STAG1	rs151105710-?	0.8089	2E-13		0.0256	[0.019-0.032] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1623	chr3	136134167	136134167	rs112995129	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 2,680 cases, 380,970 European ancestry controls, 73,242 controls	NA	3q22.3	STAG1	rs112995129-AAAAAC	0.769474	4E-10		1.08	[1.06-1.11]	NR [10903881] (imputed)	N
1623	chr3	136137421	136137422	rs10935182	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	3q22.3	NR	rs10935182-?	NR	7E-10		1.1111112		Affymetrix, Illumina [9938587] (imputed)	N
1623	chr3	136139729	136139730	rs11915629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q22.3		rs11915629-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1623	chr3	136150868	136150869	rs114452756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.3	NR	rs114452756-A	NR	2E-15		0.0449	[0.034-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr3	136150868	136150869	rs114452756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs114452756-A	NR	8E-16		0.0478	[0.036-0.059] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr3	136150868	136150869	rs114452756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q22.3	NR	rs114452756-A	NR	3E-9		0.0352	[0.024-0.047] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr3	136150868	136150869	rs114452756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3q22.3	NR	rs114452756-A	NR	4E-12		0.0411	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1623	chr3	136153467	136153468	rs10935184	32231276	Cai N	2020-03-30	Nat Genet	Minimal phenotyping yields genome-wide association signals of low specificity for major depression.	Neuroticism	274,107 British ancestry individuals	NA	3q22.3	NR	rs10935184-C	0.4093	1E-9		0.01165	[0.0079-0.0154] unit decrease	NR [8968716] (imputed)	N
1623	chr3	136153467	136153468	rs10935184	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3q22.3	PPP2R3A	rs10935184-T	0.407441	5E-9		5.85	z score increase	NR [10847151] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q22.3	NR	rs66691851-?	NR	4E-18		1.0832828	[1.07-1.1]	Affymetrix, Illumina [12447948] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q22.3	STAG1	rs66691851-C	NR	2E-13		1.0752687	[1.06-1.09]	Illumina [6627481] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q22.3	STAG1	rs66691851-C	NR	2E-10	(EA)	1.0729614	[1.05-1.09]	Illumina [6627481] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q22.3	NR	rs66691851-T	0.396047	9E-11		6.49	z score decrease	NR [10847151] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs66691851-T	0.39605	5E-14		7.523	z score decrease	Illumina [18485882] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q22.3	MSL2, PCCB, STAG1, TMEM22	rs66691851-C	NR	4E-15		1.0799136	[1.06-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1623	chr3	136154827	136154828	rs66691851	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q22.3	NR	rs66691851-C	NR	2E-11		1.0752687	[NR]	Illumina [7158791] (imputed)	N
1623	chr3	136165075	136165076	rs9868120	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q22.3		rs9868120-A	NR	7E-25		0.0242	[0.02-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1623	chr3	136165075	136165076	rs9868120	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q22.3	STAG1	rs9868120-C	0.660749	2E-23		0.00530254	[0.0042-0.0064] unit decrease	Affymetrix [13995440] (imputed)	N
1624	chr3	136195787	136195788	rs1394094	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q22.3		rs1394094-A	0.37	2E-8		5.64	z score increase	Affymetrix [9061022] (imputed)	N
1624	chr3	136195787	136195788	rs1394094	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q22.3		rs1394094-T	NR	4E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1624	chr3	136195787	136195788	rs1394094	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q22.3	NR	rs1394094-A	0.3593	3E-8				NR [9056863] (imputed)	N
1624	chr3	136196070	136196071	rs1394092	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	3q22.3		rs1394092-C	0.273296	2E-11		0.0308858	[0.022-0.04] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136217123	136217124	rs7429186	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q22.3	STAG1	rs7429186-T	0.410855	4E-16		0.018816825	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1624	chr3	136218929	136218930	rs900048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	3q22.3		rs900048-C	0.290497	3E-9		0.0267285	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136218929	136218930	rs900048	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	3q22.3		rs900048-C	0.290497	5E-9		0.0263328	[0.018-0.035] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136224696	136224697	rs699165	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	3q22.3	NR	rs699165-G	0.745	8E-9		0.016118657	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1624	chr3	136224696	136224697	rs699165	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3q22.3	NR	rs699165-G	0.745	1E-10		0.0161225	[0.011-0.021] unit increase	NR [9732723] (imputed)	N
1624	chr3	136231066	136231067	rs833861	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	NR	rs833861-A	0.413231	4E-12		6.92	z score decrease	NR [10847151] (imputed)	N
1624	chr3	136231578	136231578	rs56227319	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.3	STAG1	rs56227319-TA	NR	2E-8		0.0176148	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1624	chr3	136240365	136240366	rs13092193	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q22.3	STAG1	rs13092193-T	0.758	2E-10		0.1033	[0.071-0.135] unit increase	Affymetrix [~ 11900000] (imputed)	N
1624	chr3	136247337	136247337	rs34484071	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.3	STAG1	rs34484071-CCG	NR	3E-8		0.0162308	[0.01-0.022] unit increase	Affymetrix [321169] (imputed)	N
1624	chr3	136249576	136249577	rs9858457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q22.3		rs9858457-C	NR	6E-17		0.0171	[0.013-0.021] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1624	chr3	136252871	136252872	rs74648298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.3	NR	rs74648298-T	NR	2E-12		0.0301	[0.022-0.039] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr3	136252871	136252872	rs74648298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs74648298-T	NR	6E-23		0.044	[0.035-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr3	136252871	136252872	rs74648298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q22.3	NR	rs74648298-T	NR	8E-10		0.0262	[0.018-0.035] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr3	136252871	136252872	rs74648298	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	3q22.3	NR	rs74648298-T	NR	1E-12		0.0325	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1624	chr3	136255168	136255169	rs833752	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q22.3		rs833752-G	NR	2E-16		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1624	chr3	136258923	136258924	rs3932048	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3q22.3	STAG1	rs3932048-C	0.677369	6E-10		0.0138568	[0.0095-0.0182] unit decrease	Affymetrix [NR] (imputed)	N
1624	chr3	136258923	136258924	rs3932048	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3q22.3	STAG1	rs3932048-C	0.677389	4E-13		0.0161805	[0.012-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1624	chr3	136270270	136270270	rs113629060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q22.3		rs113629060-A	0.239622	2E-10		0.0297792	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136270270	136270270	rs113629060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3q22.3		rs113629060-A	0.239639	1E-12		0.0332787	[0.024-0.042] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136270270	136270270	rs113629060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	3q22.3		rs113629060-A	0.239639	1E-13		0.0358285	[0.026-0.045] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136270270	136270270	rs113629060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	3q22.3		rs113629060-A	0.239639	2E-11		0.0328412	[0.023-0.042] unit decrease	NR [11722792] (imputed)	N
1624	chr3	136270270	136270270	rs113629060	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3q22.3		rs113629060-A	0.239639	2E-8		0.0264968	[0.017-0.036] unit increase	NR [11722792] (imputed)	N
1624	chr3	136272245	136272246	rs7621025	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q22.3	NA	rs7621025-T	0.2607	8E-24		0.0187	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1624	chr3	136272245	136272246	rs7621025	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q22.3	NA	rs7621025-T	0.2607	8E-24		0.0187	[0.015-0.022] unit decrease	NR [~ 27400000] (imputed)	N
1624	chr3	136272245	136272246	rs7621025	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q22.3	NR	rs7621025-T	NR	2E-7		0.015	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1624	chr3	136272245	136272246	rs7621025	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3q22.3	STAG1	rs7621025-C	0.73	2E-8		0.016	[0.01-0.022] unit increase	Illumina [6108953] (imputed)	N
1624	chr3	136272245	136272246	rs7621025	27286809	Ligthart S	2016-06-10	BMC Genomics	Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation.	C-reactive protein levels or HDL-cholesterol levels (pleiotropy)	65,000 individuals (C-reactive protein), 99,900 individuals (HDL-cholesterol)	NA	3q22.3	STAG1	rs7621025-T	NR	1E-9				NR [2501543] (imputed)	N
1624	chr3	136274434	136274435	rs7427564	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3q22.3	NR	rs7427564-?	NR	2E-11				Illumina [up to 5582932] (imputed)	N
1624	chr3	136274434	136274435	rs7427564	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q22.3	STAG1	rs7427564-G	NR	2E-10	(EA)	1.0729614	[1.05-1.09]	Illumina [6627481] (imputed)	N
1624	chr3	136275581	136275582	rs6774964	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	STAG1	rs6774964-A	NR	7E-9		0.0193031	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1624	chr3	136275947	136275948	rs6775314	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	3q22.3	STAG1	rs6775314-A	0.243	2E-8		2.644	[1.72-3.57] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1624	chr3	136278250	136278251	rs4630889	34159505	Wang H	2021-06-16	Sci China Life Sci	Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.	Schizophrenia (MTAG)	940,613 European ancestry individuals	NA			rs4630889-?	NR	5E-9				NR [2625067]	N
1624	chr3	136278250	136278251	rs4630889	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA		NR	rs4630889-T	0.5616	3E-8		0.06128182	[0.04-0.083] unit increase	NR [NR]	N
1624	chr3	136287033	136287034	rs67113926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs67113926-T	NR	1E-10		0.0286	[0.02-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
1624	chr3	136288404	136288405	rs7432375	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3q22.3	STAG1	rs7432375-?	NR	6E-10		0.012484669	[0.0085-0.0164] unit increase	NR [7306098]	N
1624	chr3	136288404	136288405	rs7432375	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3q22.3	NR	rs7432375-A	0.395679	7E-9		5.79	z score decrease	NR [10847151] (imputed)	N
1624	chr3	136288404	136288405	rs7432375	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3q22.3	MSL2, NCK1, NCK1-AS1, PCCB, PPP2R3A, SLC35G2, STAG1	rs7432375-?	NR	4E-12		1.0834236	[1.06-1.11]	Illumina [8000000] (imputed)	N
1624	chr3	136288404	136288405	rs7432375	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs7432375-A	0.39568	4E-14		7.575	z score decrease	Illumina [18485882] (imputed)	N
1624	chr3	136288404	136288405	rs7432375	28540026	Anney RJL	2017-05-22	Mol Autism	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.	Autism spectrum disorder or schizophrenia	schizophrenia cases and controls (see Ripke, 2014), up to 6,197 European ancestry ASD cases, up to 7,377 European ancestry controls, up to 1,190 ASD cases, up to 1,190 controls	NA	3q22.3	IL20RB, MSL2, NCK1, NCK1-AS1, PCCB, PPP2R3A, SLC35G2, STAG1	rs7432375-?		3E-8		1.0526316	[1.03-1.08]	Affymetrix, Illumina [NR]	N
1624	chr3	136288404	136288405	rs7432375	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3q22.3	MSL2, NCK1, PCCB, PPP2R3A, SLC35G2, STAG1	rs7432375-G	0.551	7E-11		1.0718113	[1.05-1.09]	Affymetrix, Illumina [9005918] (imputed)	N
1624	chr3	136290528	136290529	rs10935185	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3q22.3	NR	rs10935185-?		5E-9				NR [8377093]	N
1624	chr3	136294756	136294757	rs13065626	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Coronary artery disease	31,355 European ancestry cases, 377,103 European ancestry controls	NA	3q22.3	STAG1	rs13065626-G	0.137	2E-8				Affymetrix [28000000] (imputed)	N
1624	chr3	136309709	136309710	rs940174	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	3q22.3		rs940174-?	NR	5E-10		0.0188	NR unit decrease	NR [4484088] (imputed)	N
1624	chr3	136309709	136309710	rs940174	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3q22.3	NR	rs940174-?		3E-9				NR [8377093]	N
1625	chr3	136322265	136322265	rs34634128	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	3q22.3		rs34634128-G	0.259643	3E-11		0.0302059	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1625	chr3	136328267	136328268	rs1471741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	3q22.3		rs1471741-C	NR	2E-10		0.0409	[0.028-0.053] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total concentration of branched-chain amino acids (leucine + isoleucine + valine)	115,051 European ancestry individuals	NA	3q22.3		rs1471740-T	0.259814	4E-9		0.0269188	[0.018-0.036] unit decrease	NR [11722792] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	5E-33		0.027	mmol/L increase	NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	1E-140		0.053	nmol/L decrease	NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	4E-53				NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	3E-25		0.021	mmol/L decrease	NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	4E-9		0.01	% increase	NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3q22.3		rs1471740-C	0.74	2E-27		0.025	U/L increase	NR [NR] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.3	NR	rs1471740-?	NR	5E-18				Affymetrix [~ 8270000] (imputed)	N
1625	chr3	136328269	136328270	rs1471740	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q22.3		rs1471740-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1625	chr3	136346205	136346206	rs10935186	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q22.3	STAG1	rs10935186-T	0.598	1E-13		0.009	[0.0066-0.0114] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1625	chr3	136353073	136353074	rs13434116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.3	NR	rs13434116-?	NR	9E-13				Affymetrix [~ 8270000] (imputed)	N
1625	chr3	136353073	136353074	rs13434116	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q22.3	STAG1	rs13434116-G	0.7611	2E-10		0.1039	[0.072-0.136] unit increase	Affymetrix [~ 11900000] (imputed)	N
1625	chr3	136361054	136361055	rs28750366	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	3q22.3	STAG1	rs28750366-?	NR	4E-8			[NR]	NR [NR] (imputed)	N
1625	chr3	136362222	136362223	rs73230015	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3q22.3	NR	rs73230015-A	NR	5E-9		0.0319	[0.021-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1625	chr3	136369952	136369953	rs111379782	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs111379782-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1625	chr3	136371690	136371691	rs6439649	31972866	Nagel M	2020-01-23	Acta Psychiatr Scand	Genome-wide association study of the sensitivity to environmental stress and adversity (SESA) neuroticism cluster.	Sensitivity to environmental stress and adversity	351,827 European ancestry individuals	NA	3q22.3	NR	rs6439649-G	NR	2E-9		0.01432	NR unit decrease	NR [7259579]	N
1625	chr3	136371690	136371691	rs6439649	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q22.3	PPP2R3A	rs6439649-T	0.39626	5E-11		6.58	z score increase	NR [10847151] (imputed)	N
1625	chr3	136371690	136371691	rs6439649	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	NR	rs6439649-T	0.39626	8E-12		6.83	z score increase	NR [10847151] (imputed)	N
1625	chr3	136377376	136377377	rs6791142	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3q22.3	PPP2R3A	rs6791142-T	0.384429	2E-9		6.014	unit decrease	NR [10847151] (imputed)	N
1625	chr3	136384911	136384912	rs9876771	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q22.3		rs9876771-G	NR	6E-27		0.0285	[0.023-0.034] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1625	chr3	136398386	136398387	rs7634476	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q22.3	NR	rs7634476-G	0.588499722248338	8E-12		0.012948627	[0.0092-0.0167] unit increase	NR [NR]	N
1625	chr3	136398386	136398387	rs7634476	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs7634476-A	0.39581999999999995	3E-14		7.587	z score decrease	Illumina [18485882] (imputed)	N
1625	chr3	136400419	136400420	rs7618871	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3q22.3	STAG1	rs7618871-?		1E-8				NR [6786993] (imputed)	N
1625	chr3	136400419	136400420	rs7618871	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3q22.3	NR	rs7618871-T	0.39586	1E-8		5.71	z score increase	NR [10847151] (imputed)	N
1625	chr3	136402059	136402060	rs9826828	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	3q22.3	IL20RB	rs9826828-A	0.02	9E-8	(EA)	0.35109	[0.22-0.48] unit increase	Illumina [8380626] (imputed)	N
1625	chr3	136402059	136402060	rs9826828	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	3q22.3	IL20RB	rs9826828-A	0.02	9E-10	(EA)	1.44	[1.28-1.61]	Affymetrix, Illumina [up to 9739303] (imputed)	N
1625	chr3	136416862	136416863	rs192022732	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.3	NR	rs192022732-G	0.01045	1E-9	(ALDH16A1)	0.03377	NR unit increase	Illumina [1671387] (imputed)	N
1625	chr3	136435161	136435162	rs9825700	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	STAG1	rs9825700-A	NR	1E-9		0.0176856	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
1625	chr3	136436322	136436323	rs9813590	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q22.3	STAG1	rs9813590-C	NR	2E-8		0.0177552	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1625	chr3	136443007	136443008	rs61790808	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	3q22.3	STAG1	rs61790808-A	0.64	9E-9		0.016	[0.011-0.021] unit decrease	Affymetrix, Illumina [~ 8900000] (imputed)	N
1625	chr3	136443007	136443008	rs61790808	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	3q22.3	STAG1	rs61790808-A	0.64	1E-7		0.03	[0.019-0.041] unit decrease	Affymetrix [at least 8900000] (imputed)	N
1626	chr3	136473727	136473728	rs1681817	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	3q22.3	NR	rs1681817-T	0.384289	2E-10		6.34	z score increase	NR [10847151] (imputed)	N
1626	chr3	136483889	136483890	rs6795372	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	General factor of neuroticism	270,059 British ancestry individuals	NA	3q22.3	ENSG00000261758	rs6795372-T	NR	4E-9		0.010291	[0.0069-0.0137] unit increase	Affymetrix [18485882] (imputed)	N
1626	chr3	136483889	136483890	rs6795372	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q22.3	NR	rs6795372-T	NR	2E-10		6.333	z score decrease	Affymetrix [10847151] (imputed)	N
1626	chr3	136483889	136483890	rs6795372	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	3q22.3	NR	rs6795372-G	NR	1E-9		0.0145	[0.0098-0.0192] unit increase	Affymetrix [10847151] (imputed)	N
1626	chr3	136485615	136485616	rs55749418	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3q22.3	SLC35G2	rs55749418-A	0.0902	5E-8		0.018467033	[0.012-0.025] unit increase	Illumina [9339358] (imputed)	N
1626	chr3	136487988	136487989	rs9853960	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs9853960-A	NR	2E-9		6.001	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1626	chr3	136500732	136500733	rs1729951	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	NR	rs1729951-T	0.382594	1E-11		6.78	z score decrease	NR [10847151] (imputed)	N
1626	chr3	136500732	136500733	rs1729951	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling worry	372,869 European ancestry individuals	NA	3q22.3	NR	rs1729951-T	0.382594	2E-9		5.998	unit decrease	NR [10847151] (imputed)	N
1626	chr3	136500732	136500733	rs1729951	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs1729951-T	0.38259	1E-13		7.389	z score decrease	Illumina [18485882] (imputed)	N
1626	chr3	136503895	136503896	rs1872240	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q22.3	STAG1	rs1872240-C	0.678233	8E-24		0.00425083	[0.0034-0.0051] unit decrease	Affymetrix [13995440] (imputed)	N
1626	chr3	136505831	136505832	rs13075615	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q22.3	NR	rs13075615-T	0.1491	4E-10		0.021721039	[0.015-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1626	chr3	136508007	136508008	rs1280622	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling nervous	373,121 European ancestry individuals	NA	3q22.3	NR	rs1280622-A	0.414395	2E-8		5.62	z score increase	NR [10847151] (imputed)	N
1626	chr3	136509040	136509041	rs13098800	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q22.3	RP11-731C17.1	rs13098800-C	0.0197	7E-6		0.1197	[0.068-0.172] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1626	chr3	136511458	136511459	rs75359259	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs75359259-A	NR	8E-11		0.0424	[0.03-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
1626	chr3	136512497	136512498	rs73230079	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q22.3	NR	rs73230079-C	0.983104	8E-11		0.04817	[0.034-0.063] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1626	chr3	136515306	136515307	rs11717974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	3q22.3		rs11717974-T	0.229643	5E-11		0.0314278	[0.022-0.041] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136515306	136515307	rs11717974	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	3q22.3		rs11717974-T	0.229643	3E-10		0.0300001	[0.021-0.039] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136523474	136523475	rs9835571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q22.3		rs9835571-G	NR	5E-12		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1626	chr3	136523474	136523475	rs9835571	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q22.3		rs9835571-G	NR	7E-19		0.0212	[0.016-0.026] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1626	chr3	136523474	136523475	rs9835571	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q22.3	NR	rs9835571-G	0.689834	3E-27		0.022014	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1626	chr3	136535023	136535024	rs2343681	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of apolipoprotein B to apolipoprotein A1 levels	115,082 European ancestry individuals	NA	3q22.3		rs2343681-G	0.211579	4E-11		0.0330041	[0.023-0.043] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136535023	136535024	rs2343681	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q22.3		rs2343681-A	NR	5E-11		0.0187	[0.013-0.024] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1626	chr3	136535023	136535024	rs2343681	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q22.3	SLC35G2	rs2343681-G	0.210923	2E-13		0.0123563	[0.0091-0.0156] unit decrease	Affymetrix [12370749]	N
1626	chr3	136536834	136536835	rs9828976	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs9828976-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
1626	chr3	136536834	136536835	rs9828976	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q22.3	SLC35G2	rs9828976-C	0.7558	2E-12		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1626	chr3	136536834	136536835	rs9828976	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q22.3	SLC35G2	rs9828976-C	0.7542	2E-12		0.0024	[0.0016-0.0032] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
1626	chr3	136538190	136538191	rs7610507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	3q22.3		rs7610507-C	0.213472	3E-9		0.0300145	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136538190	136538191	rs7610507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of LDL particles	115,082 European ancestry individuals	NA	3q22.3		rs7610507-C	0.213472	4E-8		0.0277222	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136538190	136538191	rs7610507	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Apolipoprotein B levels	115,082 European ancestry individuals	NA	3q22.3		rs7610507-C	0.213472	2E-8		0.0283443	[0.018-0.038] unit decrease	NR [11722792] (imputed)	N
1626	chr3	136541666	136541667	rs62410363	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q22.3		rs62410363-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1626	chr3	136561898	136561899	rs9834250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q22.3	SLC35G2	rs9834250-G	0.686997	9E-17		0.019766632	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1626	chr3	136574500	136574501	rs1052618	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3q22.3	SLC35G2	rs1052618-G	0.6930000000000001	8E-9		0.0108	[0.0071-0.0145] unit increase	Illumina [246328]	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	7E-12		0.0345291	[0.025-0.044] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	2E-12		0.0355613	[0.026-0.045] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	2E-11		0.0340634	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	4E-10		0.0317518	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	2E-10		0.0322188	[0.022-0.042] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	4E-11		0.0334348	[0.024-0.043] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	3q22.3		rs71630059-G	0.789155	2E-12		0.0356044	[0.026-0.046] unit increase	NR [11722792] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	3E-13		0.0214	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	1E-9		0.0179	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	2E-41		0.0396	[0.034-0.045] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	3E-52		0.0469	[0.041-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	3E-9		0.0182	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	2E-18		0.0257	[0.02-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	5E-13		0.0212	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	1E-15		0.0236	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	1E-10		0.0198	[0.014-0.026] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	3E-11		0.0196	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Direct bilirubin levels	291,512 European ancestry individuals, 5,007 African ancestry individuals, 6,088 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	5E-26		0.0335	[0.027-0.04] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	5E-20		0.0269	[0.021-0.033] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	1E-15		0.0236	[0.018-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	3E-14		0.0233	[0.017-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1627	chr3	136581610	136581611	rs71630059	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3q22.3	NR	rs71630059-A	NR	9E-17		0.0244	[0.019-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
1627	chr3	136581952	136581953	rs938525	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs938525-T	0.714091	2E-16				Affymetrix, Illumina [23467995] (imputed)	N
1627	chr3	136586763	136586764	rs35762227	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q22.3	NCK1	rs35762227-AT	0.327274	1E-13		0.017607452	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr3	136588892	136588893	rs55650043	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q22.3	NR	rs55650043-T	0.408256	3E-10		0.013113	[0.009-0.0172] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1627	chr3	136589548	136589549	rs11715604	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	3q22.3	NCK1	rs11715604-?	NR	2E-9				Illumina [10806625] (imputed)	N
1627	chr3	136597119	136597120	rs9870377	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.3	NR	rs9870377-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1627	chr3	136600666	136600667	rs7434143	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q22.3	NR	rs7434143-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1627	chr3	136610629	136610630	rs4678272	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q22.3	NR	rs4678272-T	0.689461	5E-18		0.017407	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1627	chr3	136615267	136615268	rs1609391	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q22.3	NR	rs1609391-A	0.408701	4E-8		5.51	z score decrease	NR [10847151] (imputed)	N
1627	chr3	136615267	136615268	rs1609391	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs1609391-A	0.4087	3E-11		6.671	z score decrease	Illumina [18485882] (imputed)	N
1627	chr3	136618908	136618909	rs9867325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	NCK1	rs9867325-C	0.242	1E-6	(EA, women)	0.022	[0.013-0.031] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1627	chr3	136618908	136618909	rs9867325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	NCK1	rs9867325-C	0.242	1E-6	(EA)	0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1627	chr3	136618908	136618909	rs9867325	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	NCK1	rs9867325-C	0.24	1E-6		0.017	[0.01-0.024] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1627	chr3	136622559	136622560	rs6800032	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs6800032-T	0.714849	1E-26				Affymetrix, Illumina [23472807] (imputed)	N
1627	chr3	136622559	136622560	rs6800032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q22.3		rs6800032-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1627	chr3	136625435	136625436	rs6439675	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q22.3	NCK1	rs6439675-A	0.6023	2E-16		0.018766426	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr3	136625435	136625436	rs6439675	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q22.3	NR	rs6439675-A	0.602741	1E-22		0.018269	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1627	chr3	136631274	136631275	rs9828009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs9828009-T	0.659561	6E-21				Affymetrix, Illumina [24588908] (imputed)	N
1627	chr3	136633570	136633571	rs2117009	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs2117009-T	0.659532	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
1627	chr3	136638974	136638975	rs9879531	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q22.3	NCK1	rs9879531-A	0.7557	5E-16		0.0078	[0.0058-0.0098] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1627	chr3	136664736	136664737	rs13320485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q22.3	NCK1	rs13320485-T	0.016776	2E-10		0.05556117	[0.038-0.073] unit decrease	Affymetrix [93095623] (imputed)	N
1627	chr3	136671503	136671504	rs835648	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	3q22.3		rs835648-A	NR	5E-10		0.021898791	[0.015-0.029] years increase	NR [7400000] (imputed)	N
1627	chr3	136671760	136671761	rs7648198	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	IL20RB	rs7648198-C	NR	4E-10		0.0179886	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1627	chr3	136671889	136671890	rs835649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q22.3	IL20RB	rs835649-A	0.449796	4E-9		0.013114219	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
1627	chr3	136671889	136671890	rs835649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q22.3		rs835649-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1627	chr3	136674499	136674500	rs835636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q22.3	NR	rs835636-C	0.489868	4E-16		0.015098	[0.011-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1627	chr3	136676495	136676496	rs835633	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs835633-?	NR	4E-12				Affymetrix [~ 8270000] (imputed)	N
1628	chr3	136716772	136716773	rs361231	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.3	IL20RB	rs361231-C	NR	4E-8		0.0157552	[0.01-0.021] unit decrease	Affymetrix [321016] (imputed)	N
1628	chr3	136734013	136734014	rs1682361	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q22.3	NR	rs1682361-G	NR	8E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
1628	chr3	136752589	136752590	rs13099657	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q22.3	NR	rs13099657-?	NR	3E-6		4.648	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1628	chr3	136752652	136752653	rs9827066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	IL20RB	rs9827066-C	NR	2E-10		0.0182343	[0.013-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1628	chr3	136760597	136760598	rs7651736	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q22.3	intergenic	rs7651736-A	0.56895	9E-12		6.821	z score increase	Illumina [18485882] (imputed)	N
1628	chr3	136762242	136762243	rs6763553	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	IL20RB	rs6763553-C	NR	8E-9		0.016752	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
1628	chr3	136762248	136762249	rs6763556	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	3q22.3		rs6763556-T	0.391696077	4E-7		0.013361213	[0.0082-0.0185] unit increase	Affymetrix, Illumina [up to 7284995] (imputed)	N
1628	chr3	136762375	136762376	rs200737477	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3q22.3		rs200737477-T	0.051948	6E-7		0.075386	[0.046-0.105] unit decrease	Affymetrix [15580782] (imputed)	N
1628	chr3	136762375	136762376	rs200737477	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3q22.3		rs200737477-T	0.051948	9E-6		0.068295	[0.038-0.098] unit decrease	Affymetrix [15580782] (imputed)	N
1628	chr3	136762936	136762937	rs12489946	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3q22.3	IL20RB	rs12489946-A	0.1506	6E-6	(EA)			Illumina [4404269] (imputed)	N
1628	chr3	136768009	136768010	rs17374749	24047446	Schosser A	2013-09-19	World J Biol Psychiatry	Genome-wide association study of co-occurring anxiety in major depression.	Anxiety in major depressive disorder	1,080 European ancestry cases, 442 European ancestry controls	NA	3q22.3	IL20RB	rs17374749-?	0.78	7E-6	(Dichotomous)	1.54	[NR]	Illumina [471581]	N
1628	chr3	136796220	136796221	rs34687891	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q22.3	IL20RB	rs34687891-A	0.0775	3E-6		0.0613	[0.036-0.087] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1628	chr3	136810178	136810189	rs199916758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	IL20RB	rs199916758-CTCTATGTG	NR	1E-8		0.0164596	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1628	chr3	136810178	136810189	rs199916758	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q22.3	IL20RB	rs199916758-CTCTATGTG	NR	5E-9		0.0167185	[0.011-0.022] unit decrease	Affymetrix [321016] (imputed)	N
1628	chr3	136815174	136815175	rs9843104	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs9843104-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1629	chr3	136867312	136867313	rs7647718	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs7647718-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
1630	chr3	136989990	136989991	rs13067731	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q22.3	IL20RB	rs13067731-T	0.16	1E-9		0.04	[0.026-0.054] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1630	chr3	137015486	137015487	rs6439699	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q22.3	RNA5SP142	rs6439699-A	NR	7E-9		0.02239824	[0.015-0.03] unit increase	Affymetrix [NR]	N
1630	chr3	137030182	137030183	rs6439701	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	3q22.3	IL20RB	rs6439701-T	0.605	1E-8		0.027	[0.017-0.037] SD units decrease	NR [9926106] (imputed)	N
1630	chr3	137031236	137031237	rs7616632	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	3q22.3	NR	rs7616632-T	NR	5E-9		0.732	unit increase	Affymetrix [14661600] (imputed)	N
1630	chr3	137031236	137031237	rs7616632	30531941	Doherty A	2018-12-10	Nat Commun	GWAS identifies 14 loci for device-measured physical activity and sleep duration.	Sleep duration	91,105 European ancestry individuals	NA	3q22.3	IL20RB	rs7616632-T	0.5199	2E-6		0.021791954	[0.013-0.031] SD units increase	NR [9926106] (imputed)	N
1630	chr3	137031236	137031237	rs7616632	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs7616632-T	NR	1E-8		5.663	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1630	chr3	137037057	137037058	rs9862291	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q22.3	RNA5SP142	rs9862291-A	NR	5E-10		0.019086927	[0.013-0.025] unit decrease	Affymetrix [NR]	N
1630	chr3	137057629	137057630	rs66752974	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3q22.3	NR	rs66752974-C	0.158052	1E-8		0.0493515	[0.032-0.066] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1630	chr3	137057629	137057630	rs66752974	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3q22.3	Intergenic	rs66752974-A	0.1652	8E-9		0.0221	[0.015-0.03] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1630	chr3	137060688	137060689	rs7648568	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs7648568-T	NR	5E-9		5.852	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1630	chr3	137068012	137068013	rs6780666	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q22.3	RNA5SP142	rs6780666-T	NR	5E-9		0.018239133	[0.012-0.024] unit decrease	Affymetrix [NR]	N
1630	chr3	137076352	137076353	rs9864672	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q22.3	Intergenic	rs9864672-T	0.5251	4E-8	(MTAG)	0.0072	[0.0047-0.0097] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1631	chr3	137108481	137108482	rs1382269	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	3q22.3	intergenic	rs1382269-?	0.47	5E-7	(SM)			Affymetrix [187454]	N
1631	chr3	137121242	137121243	rs13064915	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q22.3		rs13064915-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1631	chr3	137121242	137121243	rs13064915	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	3q22.3	RNA5SP142	rs13064915-T	NR	3E-9		0.018301688	[0.012-0.024] unit increase	Affymetrix [NR]	N
1631	chr3	137122393	137122394	rs13071190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q22.3	Intergenic	rs13071190-T	0.679	1E-9	(MTAG)	0.0149	[0.01-0.0198] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1631	chr3	137122393	137122394	rs13071190	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs13071190-T	NR	6E-10		6.203	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1631	chr3	137198192	137198193	rs13324482	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs13324482-A	NR	4E-9		5.865	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1632	chr3	137236441	137236442	rs1899459	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q22.3	NR	rs1899459-T	NR	5E-8		5.461	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1632	chr3	137253712	137253713	rs6797178	26265699	Karol SE	2015-08-11	Blood	Genetics of glucocorticoid-associated osteonecrosis in children with acute lymphoblastic leukemia.	Glucocorticoid-induced osteonecrosis	274 European ancestry osteonecrosis cases, 25 Black osteonecrosis cases, 68 Hispanic osteonecrosis cases, 6 Asian ancestry osteonecrosis cases, 27 other ancestry osteonecrosis cases,  1,477 European ancestry treated controls, 223 Black treated controls, 572 Hispanic treated controls, 48 Asian ancestry treated controls, 235 other ancestry treated controls	NA	3q22.3	SOX14	rs6797178-A	0.39	6E-6				Affymetrix, Illumina [NR] (imputed)	N
1632	chr3	137310906	137310907	rs9289543	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q22.3	NR	rs9289543-?	NR	5E-8				Affymetrix [NR]	N
1633	chr3	137419101	137419102	rs16847364	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q22.3	NR	rs16847364-?	NR	2E-9				Affymetrix [NR]	N
1633	chr3	137441371	137441372	rs6781808	26974007	Ellinghaus D	2016-03-14	Nat Genet	Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci.	Chronic inflammatory diseases (ankylosing spondylitis, Crohn's disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)	8,726 European ancestry ankylosing spondylitis cases, 19,085 European ancestry Crohn's disease cases, 6,530 European ancestry psoriasis cases, 3,408 European ancestry primary sclerosing cholangitis cases, 14,513 European ancestry ulcerative colitis cases, 34,213 European ancestry controls	NA	3q22.3	NPM1P17	rs6781808-?	NR	8E-9	(subset analysis)			Illumina [130052]	N
1633	chr3	137447484	137447485	rs10935268	19578179	Teichert M	2009-07-04	Hum Mol Genet	A genome-wide association study of acenocoumarol maintenance dosage.	Acenocoumarol maintenance dosage	1,451 European ancestry individuals	287 individuals	3q22.3	CNTN4	rs10935268-?	NR	8E-7				Illumina [~ 550000]	N
1634	chr3	137495801	137495802	rs201726	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01210	rs201726-?	NR	9E-10		1.23866	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1634	chr3	137495801	137495802	rs201726	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC01210	rs201726-?	NR	1E-8	(male)	1.27547	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1634	chr3	137495801	137495802	rs201726	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA		CLDN18	rs201726-?	NR	6E-6	(citrate)	0.68232197	[0.39-0.98] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1634	chr3	137527280	137527281	rs80303536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q22.3	NR	rs80303536-G	0.02091	4E-9	(PRDX5)	0.3821	NR unit decrease	Illumina [1671387] (imputed)	N
1634	chr3	137562822	137562823	rs1457063	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q22.3	NR	rs1457063-A	NR	1E-9		1.044	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1635	chr3	137650735	137650736	rs16847609	25778476	Jun G	2015-03-17	Mol Psychiatry	A novel Alzheimer disease locus located near the gene encoding tau protein.	Alzheimer's disease in APOE e4- carriers	7,184 cases, 26,968 controls	718 European ancestry cases, 1,699 European ancestry controls	3q22.3	SOX14, CLDN18	rs16847609-A	0.09	5E-7		1.19	[1.11-1.28]	NR [NR]	N
1635	chr3	137719269	137719270	rs16847735	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs fathers)	535 mothers, 645 fathers	NA	3q22.3	NR	rs16847735-?		4E-6		1.58	[NR]	Illumina [NR] (imputed)	N
1635	chr3	137734838	137734839	rs12330713	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q22.3		rs12330713-?	NR	4E-11				NR [~ 8900000] (imputed)	N
1636	chr3	137758159	137758160	rs189056	32374345	Turley TN	2020-05-06	JAMA Cardiol	Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection.	Spontaneous coronary artery dissection	484 European ancestry cases, 1,477 European ancestry controls	183 European ancestry cases, 340 European ancestry controls	3q22.3	intergenic	rs189056-A	0.36	8E-6		1.35	[1.18-1.54]	Illumina [~ 5000000] (imputed)	N
1636	chr3	137818098	137818099	rs11928535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q22.3	Intergenic	rs11928535-A	0.1713	8E-10	(MTAG)	0.0146	[0.0099-0.0193] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1636	chr3	137818098	137818099	rs11928535	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q22.3	Intergenic	rs11928535-G	0.8287	3E-9		0.0154	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1636	chr3	137881083	137881084	rs36061810	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q22.3	DBR1	rs36061810-G	0.015967	2E-9		0.05373615	[0.036-0.071] unit increase	Affymetrix [93095623] (imputed)	N
1637	chr3	137963124	137963125	rs190058083	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q22.3	ARMC8	rs190058083-C	0.015418	2E-9		0.0560238	[0.038-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1637	chr3	137984390	137984391	rs144109676	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Campylobacter D abundance in stool	5,959 Finnish ancestry individuals	NA	3q22.3		rs144109676-T	0.0105379	9E-10		0.13466	[0.092-0.178] unit increase	Illumina [7980478] (imputed)	N
1637	chr3	137997741	137997742	rs13059110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.3	ARMC8, NME9	rs13059110-T	NR	1E-9		0.0253594	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1637	chr3	137997741	137997742	rs13059110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.3	ARMC8, NME9	rs13059110-T	NR	8E-10		0.0256313	[0.017-0.034] unit increase	Affymetrix [319769] (imputed)	N
1637	chr3	137997741	137997742	rs13059110	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.3	ARMC8, NME9	rs13059110-T	NR	8E-10		0.025977	[0.018-0.034] unit increase	Affymetrix [321169] (imputed)	N
1637	chr3	137997741	137997742	rs13059110	27416945	Walford GA	2016-07-14	Diabetes	Genome-Wide Association Study of the Modified Stumvoll Insulin Sensitivity Index Identifies BCL2 and FAM19A2 as Novel Insulin Sensitivity Loci.	Modified Stumvoll Insulin Sensitivity Index	16,753 European ancestry individuals	13,354 European ancestry individuals	3q22.3	TXNDC6	rs13059110-?	NR	2E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [up to 2400000] (imputed)	N
1638	chr3	138025135	138025136	rs3856636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q22.3	Intergenic	rs3856636-T	0.2939	2E-10	(MTAG)	0.0125	[0.0086-0.0164] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1638	chr3	138025135	138025136	rs3856636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q22.3	Intergenic	rs3856636-T	0.2936	9E-9	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1638	chr3	138025395	138025396	rs9846480	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Whole-brain volume (Alzheimer's disease interaction)	434 European ancestry mild cognitive impairment cases, 245 European ancestry Alzheimer's disease cases, 284 European ancestry controls	NA	3q22.3	TXNDC6	rs9846480-?	NR	8E-6		0.009	[NR] unit increase	Illumina [478011]	N
1638	chr3	138025620	138025621	rs7638688	24931836	Diekstra FP	2014-06-27	Ann Neurol	C9orf72 and UNC13A are shared risk loci for amyotrophic lateral sclerosis and frontotemporal dementia: a genome-wide meta-analysis.	Amyotrophic lateral sclerosis	4,377 European ancestry cases, 13,017 European ancestry controls	NA	3q22.3	TXNDC6	rs7638688-?	0.71	1E-6		1.1764705	[NR]	Illumina [~ 1400000] (imputed)	N
1638	chr3	138029376	138029377	rs9867678	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q22.3	Intergenic	rs9867678-A	0.3351	9E-9	(MTAG)	0.014	[0.0093-0.0187] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1638	chr3	138031438	138031439	rs4678406	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q22.3	Intergenic	rs4678406-T	0.29	2E-8		0.0122	[0.0081-0.0163] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1638	chr3	138052753	138052754	rs6807945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q22.3		rs6807945-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1638	chr3	138053186	138053187	rs4678408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q22.3		rs4678408-G	NR	1E-18		0.0187	[0.015-0.023] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1638	chr3	138053186	138053187	rs4678408	32589924	Bi W	2020-06-23	Am J Hum Genet	A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank.	Essential hypertension (time to event)	76,566 British ancestry cases, 206,305 British ancestry controls	NA	3q22.3	NME9, MRAS	rs4678408-?	NR	9E-9				NR [~ 24000000] (imputed)	N
1638	chr3	138053186	138053187	rs4678408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q22.3	NR	rs4678408-G	0.629475	6E-12		0.00937888	[0.0068-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1638	chr3	138053186	138053187	rs4678408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3q22.3	NR	rs4678408-G	0.6299600000000001	8E-17		0.0261471	[0.02-0.032] unit increase	Affymetrix [16577424] (imputed)	N
1638	chr3	138053186	138053187	rs4678408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3q22.3		rs4678408-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1638	chr3	138055135	138055136	rs6766859	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q22.3	NR	rs6766859-C	0.3763	7E-12		0.0329	[0.023-0.042] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1638	chr3	138055135	138055136	rs6766859	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q22.3	NR	rs6766859-C	0.3864	8E-12		0.0275	[0.02-0.035] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1638	chr3	138055135	138055136	rs6766859	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q22.3	NR	rs6766859-T	0.6284080000000001	1E-21		0.0305299	[0.024-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1638	chr3	138055135	138055136	rs6766859	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3q22.3	NME9	rs6766859-C	0.371212	1E-10		0.040738042	[0.028-0.053] unit increase	Affymetrix [7288503] (imputed)	N
1638	chr3	138056549	138056550	rs6439804	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3q22.3		rs6439804-C	NR	3E-9		0.0306	[0.021-0.041] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1638	chr3	138057902	138057903	rs2054468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q22.3		rs2054468-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1638	chr3	138064435	138064436	rs75215632	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q22.3		rs75215632-T	NR	4E-7		3.8109	[2.38-5.24] unit increase	Illumina [NR] (imputed)	N
1638	chr3	138067315	138067316	rs140371629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q22.3		rs140371629-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1638	chr3	138067625	138067626	rs11713141	32469254	Matsunaga H	2020-05-29	Circ Genom Precis Med	Transethnic Meta-analysis of Genome-wide Association Studies Identifies Three New Loci and Characterizes Population-specific Differences for Coronary Artery Disease.	Coronary artery disease	15,302 Japanese ancestry cases, 76,014 European and East Asian ancestry cases, 36,140 Japanese ancestry controls, 264,785 European and East Asian ancestry controls	NA	3q22.3	MRAS	rs11713141-C	0.38	1E-9		1.05	[1.02-1.08]	Illumina [5167567] (imputed)	N
1638	chr3	138070900	138070901	rs13324341	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q22.3	MRAS	rs13324341-T	0.157949	4E-10		1.07	[1.04-1.09]	NR [8126035] (imputed)	N
1638	chr3	138077176	138077176	rs56330132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q22.3	NR	rs56330132-C	0.814157	1E-12		0.00771718	[0.0056-0.0098] unit increase	Affymetrix [16582909] (imputed)	N
1638	chr3	138077176	138077176	rs56330132	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q22.3	NR	rs56330132-C	0.814157	4E-7		0.00619278	[0.0038-0.0086] unit increase	Affymetrix [16582965] (imputed)	N
1638	chr3	138078197	138078198	rs730158	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q22.3		rs730158-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1638	chr3	138089037	138089038	rs7626388	34337532	Fantus RJ	2021-05-25	Eur Urol Open Sci	Genetic Susceptibility for Low Testosterone in Men and Its Implications in Biology and Screening: Data from the UK Biobank.	Low testosterone levels	13,409 European ancestry male cases, 98,267 European ancestry male controls	4,426 European ancestry male cases, 32,800 European ancestry male controls	3q22.3	NR	rs7626388-G	0.34	2E-10		1.08	NR	NR [8853336] (imputed)	N
1638	chr3	138091139	138091140	rs1199334	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q22.3	NA	rs1199334-A	0.1896	2E-12		0.0145	[0.01-0.019] unit increase	NR [~ 27400000] (imputed)	N
1638	chr3	138091700	138091701	rs1199333	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q22.3	MRAS	rs1199333-G	0.184152	6E-14		0.0135434	[0.01-0.017] unit increase	Affymetrix [12370749]	N
1638	chr3	138091700	138091701	rs1199333	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q22.3	MRAS	rs1199333-?	NR	3E-6				Illumina [859311]	N
1638	chr3	138092888	138092889	rs185244	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Myocardial infarction	20,917 European ancestry cases, 440,906 European ancestry controls, 14,992 East Asian ancestry cases, 146,214 East Asian ancestry controls	NA	3q22.3		rs185244-T	NR	2E-13		0.0788	[0.058-0.1] unit increase	Affymetrix, Illumina [25841367] (imputed)	N
1638	chr3	138092888	138092889	rs185244	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q22.3	MRAS	rs185244-?	NR	1E-20		0.0575817	[0.045-0.07] unit increase	Illumina [4804024] (imputed)	N
1638	chr3	138092888	138092889	rs185244	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q22.3	MRAS	rs185244-T	0.1625	2E-17		0.0644	[0.05-0.079] unit increase	Affymetrix [at least 7947838] (imputed)	N
1638	chr3	138092888	138092889	rs185244	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q22.3	MRAS	rs185244-T	0.1624	3E-18		0.0737	[0.057-0.09] unit increase	NR [8041861] (imputed)	N
1638	chr3	138097533	138097534	rs1678443	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q22.3	NR	rs1678443-?	NR	1E-6				Affymetrix [5486770] (imputed)	N
1638	chr3	138099161	138099161	rs139016349	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	3q22.3	MRAS	rs139016349-I	0.163	9E-12		1.08	[1.05-1.10]	Affymetrix [9149595] (imputed)	N
1638	chr3	138103926	138103927	rs1308362	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1308362-A	0.1952	6E-9		0.0296	[0.02-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138104026	138104027	rs71310214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.3	MRAS	rs71310214-G	NR	2E-8		0.0318228	[0.021-0.043] unit increase	Affymetrix [319769] (imputed)	N
1638	chr3	138104026	138104027	rs71310214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.3	MRAS	rs71310214-G	NR	8E-9		0.0325276	[0.021-0.044] unit increase	Affymetrix [319769] (imputed)	N
1638	chr3	138104026	138104027	rs71310214	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.3	MRAS	rs71310214-G	NR	1E-8		0.0322577	[0.021-0.043] unit increase	Affymetrix [321169] (imputed)	N
1638	chr3	138105053	138105054	rs6782181	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3q22.3	MRAS	rs6782181-G	0.3517	3E-8		1.045	NR	Affymetrix [9154080] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q22.3	NR	rs1720825-A	NR	9E-9		0.018	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q22.3	MRAS	rs1720825-A	0.1948	8E-6		0.0225	[0.013-0.032] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-?	NR	5E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-?	NR	4E-9				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-?	NR	4E-8	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-?	NR	3E-6	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-A	0.1983	3E-8	(EA)	0.026	[0.017-0.035] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-A	0.1983	3E-6	(EA, women)	0.0281	[0.016-0.04] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108082	138108083	rs1720825	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q22.3	MRAS	rs1720825-A	0.1948	3E-6	(women)	0.027	[0.016-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1638	chr3	138108351	138108352	rs9848655	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q22.3	NR	rs9848655-A	0.1565	2E-15		0.0187	[0.014-0.023] unit increase	NR [~ 27400000] (imputed)	N
1638	chr3	138111750	138111751	rs9864898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q22.3	MRAS	rs9864898-C		4E-7		0.271	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1638	chr3	138111750	138111751	rs9864898	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q22.3	MRAS	rs9864898-C		5E-9		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1638	chr3	138112943	138112944	rs11299268	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q22.3		rs11299268-G	NR	5E-8		0.0153	[0.0098-0.0208] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1638	chr3	138113352	138113353	rs253664	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	MRAS	rs253664-T	0.202	7E-6	(EA)	0.017	[0.0099-0.0247] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1638	chr3	138113352	138113353	rs253664	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q22.3	MRAS	rs253664-T	0.202	3E-7	(EA, women)	0.025	[0.015-0.034] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1638	chr3	138115769	138115770	rs253666	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3q22.3	MRAS	rs253666-A		3E-7		0.0051	[0.0031-0.0071] unit increase	Affymetrix [13304133] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q22.3	MRAS	rs9872754-T	NR	8E-16		0.0308735	[0.023-0.038] unit increase	Affymetrix [319769] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q22.3	MRAS	rs9872754-T	NR	6E-16		0.0310345	[0.024-0.039] unit increase	Affymetrix [319769] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q22.3	MRAS	rs9872754-T	NR	2E-12		0.0272587	[0.02-0.035] unit increase	Affymetrix [321114] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q22.3	MRAS	rs9872754-T	NR	2E-17		0.0330542	[0.025-0.041] unit increase	Affymetrix [321169] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q22.3	NR	rs9872754-C	0.839833	9E-11		0.0103274	[0.007-0.0136] unit increase	Affymetrix [16585854] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q22.3	NR	rs9872754-C	0.839833	6E-7		0.00901002	[0.0052-0.0128] unit increase	Affymetrix [16585866] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.3	NR	rs9872754-?	NR	2E-16				Affymetrix [~ 8270000] (imputed)	N
1638	chr3	138117984	138117985	rs9872754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q22.3		rs9872754-?	NR	5E-17				NR [~ 8900000] (imputed)	N
1638	chr3	138119951	138119952	rs2306374	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q22.3	NR	rs2306374-T	0.8421	3E-6		0.0108	[0.0063-0.0153] unit decrease	NR [~ 27400000] (imputed)	N
1638	chr3	138119951	138119952	rs2306374	21378990	Schunkert H	2011-03-06	Nat Genet	Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.	Coronary heart disease	22,233 European ancestry cases, 64,762 European ancestry controls	56,682 European ancestry cases and controls	3q22.3	MRAS	rs2306374-C	0.18	3E-8		1.12	[1.07-1.16]	Affymetrix, Illumina [~ 2300000] (imputed)	N
1638	chr3	138121508	138121509	rs9851766	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q22.3		rs9851766-A	0.84	1E-9				NR [NR] (imputed)	N
1638	chr3	138121508	138121509	rs9851766	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q22.3		rs9851766-A	0.84	1E-11		0.014	% increase	NR [NR] (imputed)	N
1638	chr3	138121919	138121920	rs3732837	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q22.3	MRAS	rs3732837-A	0.849	5E-16		0.063	[0.047-0.079] unit decrease	Affymetrix [7947838] (imputed)	N
1638	chr3	138122121	138122122	rs9818870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q22.3		rs9818870-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1638	chr3	138122121	138122122	rs9818870	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Coronary artery disease	33,398 cases, 75,726 controls	NA	3q22.3	MRAS	rs9818870-T	NR	1E-7		1.11	[1.07-1.15]	Illumina [575000] (imputed)	N
1638	chr3	138122121	138122122	rs9818870	19198612	Erdmann J	2009-02-08	Nat Genet	New susceptibility locus for coronary artery disease on chromosome 3q22.3.	Coronary heart disease	1,222 European ancestry cases, 1,298 European ancestry controls	18,185 European ancestry cases, 20,068 European ancestry controls	3q22.3	MRAS	rs9818870-T	0.15	7E-13		1.15	[1.11-1.19]	Affymetrix [567119]	N
1638	chr3	138132392	138132393	rs4550782	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q22.3	MRAS, ESYT3	rs4550782-T	0.6655	5E-12		1.0286014		Affymetrix [11880941] (imputed)	N
1639	chr3	138153922	138153923	rs191240658	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	3q22.3	ESYT3	rs191240658-A	0.351	2E-11		0.01581		Illumina [243345]	N
1639	chr3	138154794	138154795	rs1109088	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q22.3		rs1109088-A	0.5738	3E-9		0.013	[0.0091-0.0169] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1639	chr3	138154794	138154795	rs1109088	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q22.3	Intergenic	rs1109088-A	0.5761	5E-14	(MTAG)	0.0136	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1639	chr3	138154794	138154795	rs1109088	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q22.3	Intergenic	rs1109088-G	0.4239	3E-13		0.0144	[0.01-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1639	chr3	138171041	138171042	rs4678418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q22.3		rs4678418-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1639	chr3	138234575	138234576	rs7626226	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3q22.3	NR	rs7626226-C	0.532424	4E-10		0.0124214	[0.0085-0.0163] unit increase	Affymetrix [16583148] (imputed)	N
1639	chr3	138244927	138244928	rs9855074	33693626	Jamieson SE	2021-03-09	Clin Infect Dis	Common and rare genetic variants that could contribute to severe otitis media in an Australian Aboriginal population.	Otitis media	21 Martu ancestry cases, 370 Martu ancestry controls	NA	3q22.3		rs9855074-G	0.23	5E-6				Illumina [6724284] (imputed)	N
1640	chr3	138294335	138294336	rs546764	29631575	Obeidat M	2018-04-10	Respir Res	The genetics of smoking in individuals with chronic obstructive pulmonary disease.	Exhaled carbon monoxide levels in smokers with chronic obstructive pulmonary disease	2,706 European ancestry individuals	NA	3q22.3	CEP70	rs546764-?	NR	8E-8		0.39	[0.25-0.53] unit increase	Illumina [7807992] (imputed)	N
1640	chr3	138296008	138296009	rs773447	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CEP70	rs773447-?	NR	4E-10		1.93934	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1640	chr3	138296008	138296009	rs773447	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		CEP70	rs773447-?	NR	2E-8	(male)	1.88617	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1640	chr3	138312080	138312081	rs78830138	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q22.3		rs78830138-C	NR	2E-7		3.4656	[2.21-4.72] unit increase	Illumina [NR] (imputed)	N
1640	chr3	138333381	138333382	rs10804658	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q22.3	NR	rs10804658-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
1640	chr3	138347956	138347957	rs641320	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAIM	5,355 Icelandic ancestry individuals	NA	3q22.3		rs641320-A	0.09061	6E-13		0.228159	[0.17-0.29] unit increase	Illumina [7506463] (imputed)	N
1640	chr3	138347956	138347957	rs641320	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q22.3	FAIM	rs641320-G	0.9415625	8E-7	(FAIM, 10420_30_3)	0.2669101	[0.16-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1640	chr3	138356416	138356417	rs2607796	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	3q22.3		rs2607796-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1640	chr3	138406669	138406670	rs493152	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q22.3	NR	rs493152-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1641	chr3	138420946	138420947	rs10706809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q22.3	PIK3CB	rs10706809-A	0.514569	8E-11		0.014735934	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1641	chr3	138496808	138496809	rs388649	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	3q22.3	NR	rs388649-A	0.4949	6E-10		0.3383	[0.23-0.45] unit decrease	Illumina [5932107] (imputed)	N
1641	chr3	138502057	138502058	rs149005978	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q22.3	NR	rs149005978-?	NR	2E-11	(Japanese)	1.0831	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1641	chr3	138531080	138531081	rs9868355	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q22.3	NR	rs9868355-T	0.439152	8E-14		0.015199	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1642	chr3	138567793	138567794	rs9873179	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs9873179-A	0.542183	5E-16				Affymetrix, Illumina [17210439] (imputed)	N
1642	chr3	138593619	138593620	rs9879628	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q22.3		rs9879628-A	0.49284	5E-10		0.013966409	[0.0096-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1642	chr3	138596591	138596592	rs68094276	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q22.3	NR	rs68094276-A	0.568355	3E-13				Affymetrix, Illumina [24588908] (imputed)	N
1642	chr3	138602882	138602883	rs7637688	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q22.3	NR	rs7637688-?	NR	7E-8	(Latino)	0.6713	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1642	chr3	138605970	138605971	rs9809657	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q22.3	NR	rs9809657-G	0.48792	3E-14		0.013929	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1642	chr3	138638756	138638757	rs67386737	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q22.3		rs67386737-A	NR	2E-8		0.0124	[0.0081-0.0167] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1642	chr3	138649660	138649661	rs68035927	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q22.3	NR	rs68035927-G	0.0689266	4E-12		0.0422907	[0.03-0.054] unit increase	NR [19129689] (imputed)	N
1642	chr3	138668508	138668509	rs142253798	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q22.3	NR	rs142253798-T	0.0175	8E-6	(EA)	0.1218	[0.068-0.175] unit decrease	Illumina [~ 11800000] (imputed)	N
1643	chr3	138675740	138675741	rs112458845	30248107	Wu S	2018-09-24	PLoS Genet	Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans.	Eyebrow thickness	2,961 Han Chinese ancestry individuals, 721 Uyghur ancestry individuals, 2,301 Latin American ancestry individuals	4,411 Dutch ancestry individuals	3q22.3	FOXL2	rs112458845-G	NR	2E-9	(East Asian, Hispanic and Other admixed)			Illumina [up to 7224952] (imputed)	N
1643	chr3	138675740	138675741	rs112458845	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Eyebrow thickness	2,922 Latin American individuals	NA	3q22.3	FOXL2	rs112458845-?	NR	4E-10				Illumina [9143600] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q22.3		rs9809852-T	0.43	7E-59		16.18	z score increase	Affymetrix [9061022] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q22.3		rs9809852-T	0.43	2E-27		10.87	z score increase	Affymetrix [9061022] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q22.3		rs9809852-T	0.43	1E-17		8.55	z score increase	Affymetrix [9061022] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q22.3	NR	rs9809852-T	0.4525	1E-17				NR [9056863] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q22.3	NR	rs9809852-T	0.4525	1E-17				NR [9056863] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 7)	19,670 European ancestry individuals	NA	3q22.3		rs9809852-?	NR	5E-11				NR [9705931] (imputed)	N
1643	chr3	138696438	138696439	rs9809852	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q22.3	NR	rs9809852-?		5E-11				NR [7428630] (imputed)	N
1643	chr3	138713703	138713704	rs1511412	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q22.3		rs1511412-?	NR	1E-43				NR [~ 8900000] (imputed)	N
1643	chr3	138713703	138713704	rs1511412	20711176	Nakashima M	2010-08-15	Nat Genet	A genome-wide association study identifies four susceptibility loci for keloid in the Japanese population.	Keloid	178 Japanese ancestry cases, 906 Japanese ancestry controls	621 Japanese ancestry cases, 2,271 Japanese ancestry controls	3q22.3	FOXL2, LOC389151	rs1511412-A	0.08	2E-13		1.87	[1.58-2.21]	Illumina [452038]	N
1643	chr3	138721930	138721931	rs6772287	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q23	CEP70, FAIM, FOXL2, FOXL2NB, PIK3CB, PRR23A, PRR23B, PRR23C	rs6772287-C	NR	3E-19		0.0877617	NR unit increase	NR [NR] (imputed)	N
1643	chr3	138722620	138722621	rs6788232	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	3q23	COPB2	rs6788232-T	NR	1E-15		0.177364	[0.13-0.22] unit increase	Affymetrix [27512692] (imputed)	N
1643	chr3	138723825	138723826	rs1553877	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs1553877-C	0.110534	2E-35		0.0639853	[0.054-0.074] unit decrease	NR [19129689] (imputed)	N
1644	chr3	138842703	138842704	rs646315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	668 European ancestry cases, 481,244 European ancestry controls, 1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	3q23		rs646315-T	NR	2E-9		0.3938	[0.26-0.52] unit increase	Affymetrix, Illumina [25844469] (imputed)	N
1644	chr3	138842703	138842704	rs646315	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Keloid	1,055 East Asian ancestry cases, 177,671 East Asian ancestry controls	NA	3q23		rs646315-T	0.070711662	5E-10		0.5603341	[0.38-0.74] unit increase	Illumina [13429980] (imputed)	N
1644	chr3	138842703	138842704	rs646315	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Keloid	812 Japanese ancestry cases, 211,641 Japanese ancestry controls	NA	3q23		rs646315-T	0.071019004	4E-12		2.0511124	[1.673990081-2.513194369]	Illumina [8919992] (imputed)	N
1644	chr3	138849110	138849110	rs112071820	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Mucinous ovarian carcinoma	2,566 European ancestry cases, 40,941 European ancestry controls	NA	3q23	NR	rs112071820-GCCAG	0.283067	2E-13		1.2854952	[1.20336051010928-1.37323590882365]	Illumina [11595112] (imputed)	N
1644	chr3	138890562	138890563	rs140701484	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q23	NR	rs140701484-?	NR	1E-8	(Japanese)	0.9447	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1644	chr3	138903984	138903985	rs7638110	22013104	Melka MG	2011-10-19	J Clin Endocrinol Metab	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity-related traits	598 French Canadian founder adolescent individuals	NA	3q23	MRPS22	rs7638110-?		5E-8	(BMI)			Illumina [530011]	N
1644	chr3	138903984	138903985	rs7638110	22013104	Melka MG	2011-10-19	J Clin Endocrinol Metab	Genome-wide scan for loci of adolescent obesity and their relationship with blood pressure.	Obesity-related traits	598 French Canadian founder adolescent individuals	NA	3q23	MRPS22	rs7638110-?		2E-6	(TFM)			Illumina [530011]	N
1644	chr3	138916392	138916393	rs11706018	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q23	NR	rs11706018-C	0.934430632634864	7E-6	(IGP75)	0.2799	[0.16-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
1644	chr3	138916392	138916393	rs11706018	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q23	NR	rs11706018-C	0.934284044682752	9E-6	(IGP74)	0.2773	[0.15-0.4] unit increase	Illumina [~ 2500000] (imputed)	N
1644	chr3	138928206	138928207	rs1521558	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q23	NR	rs1521558-A	0.368	6E-6	(IFNalpha_CXCL10_of_CD56dimCD16p)			Illumina [5084123] (imputed)	N
1645	chr3	138938994	138938995	rs12633011	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Upper cheek morphology	2,659 Han Chinese ancestry individuals	NA	3q23	PISRT1	rs12633011-?		2E-8				Illumina [4757938] (imputed)	N
1645	chr3	138938994	138938995	rs12633011	33593615	Huang Y	2020-11-09	J Genet Genomics	A genome-wide association study of facial morphology identifies novel genetic loci in Han Chinese.	Eye morphology	2,659 Han Chinese ancestry individuals	NA	3q23	PISRT1	rs12633011-?		2E-14				Illumina [4757938] (imputed)	N
1645	chr3	138977742	138977743	rs539857911	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs539857911-A	0.00544036	2E-9		0.126502	[0.085-0.168] unit decrease	NR [19129689] (imputed)	N
1645	chr3	138985982	138985983	rs13087765	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs13087765-T	0.360214	3E-23		0.0350076	[0.028-0.042] unit decrease	NR [19129689] (imputed)	N
1645	chr3	138997687	138997688	rs9866054	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q23	MRPS22, FOXL2	rs9866054-?	NR	5E-13				Illumina [at least 7383741] (imputed)	N
1645	chr3	138997950	138997951	rs77438261	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q23	NR	rs77438261-G	NR	1E-8		0.0419586	NR unit increase	NR [NR] (imputed)	N
1645	chr3	139000457	139000458	rs12695694	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q23	MRPS22, FOXL2	rs12695694-?	NR	3E-49				Illumina [at least 7383741] (imputed)	N
1645	chr3	139000457	139000458	rs12695694	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater scored)	1791 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q23	MRPS22, FOXL2	rs12695694-?	NR	2E-18	(Chinese)	0.1285	[0.1-0.157] unit decrease	Illumina [at least 7383741] (imputed)	N
1645	chr3	139002192	139002193	rs9853827	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs9853827-T	0.217568	2E-30		0.0456022	[0.038-0.053] unit decrease	NR [19129689] (imputed)	N
1645	chr3	139002192	139002193	rs9853827	29771307	Aponte JL	2018-05-16	Hum Mol Genet	Assessment of rosacea symptom severity by genome-wide association study and expression analysis highlights immuno-inflammatory and skin pigmentation genes.	Rosacea symptom severity	73,265 European ancestry individuals	NA	3q23	PRR23C, MRPS22	rs9853827-T	NR	3E-6		0.107447	[0.062-0.153] unit decrease	Illumina [at least 950000] (imputed)	N
1645	chr3	139004919	139004920	rs10212419	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Lobe size	4,919 Latin American individuals	NA	3q23	MRPS22, FOXL2	rs10212419-A	0.52	3E-14		0.107	unit increase	Illumina [671038]	N
1645	chr3	139004919	139004920	rs10212419	26105758	Adhikari K	2015-06-24	Nat Commun	A genome-wide association study identifies multiple loci for variation in human ear morphology.	Ear morphology	4,919 Latin American individuals	NA	3q23	FOXL2, MRPS22	rs10212419-A	0.52	2E-11				Illumina [671038]	N
1645	chr3	139006663	139006664	rs6802174	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q23	NR	rs6802174-G	NR	3E-10		0.0474844	NR unit decrease	NR [NR] (imputed)	N
1645	chr3	139015296	139015297	rs1873665	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs1873665-A	0.00813845	3E-14		0.130423	[0.097-0.164] unit increase	NR [19129689] (imputed)	N
1645	chr3	139026438	139026439	rs10935316	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	3q23		rs10935316-G	0.2	4E-11		0.17	[0.11-0.23] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1645	chr3	139028970	139028971	rs6439846	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs6439846-A	0.138788	1E-87		0.0906757	[0.082-0.1] unit increase	NR [19129689] (imputed)	N
1645	chr3	139029675	139029676	rs17315501	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q23	MRPS22	rs17315501-G	0.982688	4E-8		0.065761	[0.042-0.089] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1645	chr3	139032332	139032333	rs7642536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q23		rs7642536-?	NR	2E-71				NR [~ 8900000] (imputed)	N
1645	chr3	139032332	139032333	rs7642536	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	3q23	COPB2	rs7642536-T	NR	2E-21		0.199553	[0.16-0.24] unit increase	Affymetrix [27512692] (imputed)	N
1645	chr3	139032332	139032333	rs7642536	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q23	NR	rs7642536-C	NR	1E-34		0.11304	NR unit increase	NR [NR] (imputed)	N
1645	chr3	139032332	139032333	rs7642536	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	3q23	PRR23C, MRPS22	rs7642536-?	NR	3E-9		1.2391574	[1.15-1.33]	Illumina [13436641] (imputed)	N
1645	chr3	139043235	139043236	rs4894410	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	3q23	COPB2	rs4894410-G	0.021	8E-6		2.094	[1.498-2.925]	Affymetrix [716935]	N
1646	chr3	139073010	139073011	rs1044826	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q23	MRPS22	rs1044826-G	0.412	9E-6	(INS )	0.03	[NR] uU/mL increase	Illumina [899892]	N
1646	chr3	139073010	139073011	rs1044826	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q23	MRPS22	rs1044826-G	0.412	8E-6	(HOMA-IR)	0.03	[NR] unit increase	Illumina [899892]	N
1646	chr3	139157998	139157999	rs7645307	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q23	NR	rs7645307-?	NR	2E-30				Affymetrix [NR]	N
1647	chr3	139241370	139241371	rs295490	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	NR	rs295490-?	NR	8E-6				Affymetrix [5486770] (imputed)	N
1647	chr3	139265965	139265966	rs9816597	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Neuritic plaque	909 European ancestry individuals	369 individuals	3q23		rs9816597-A	0.6	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1647	chr3	139283461	139283462	rs1497266	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3q23	NMNAT3	rs1497266-C	NR	2E-8	(GO:0009229|BP|05|thiamine diphosphate biosynthetic process)	5.590062	NR Z-score increase	Illumina [8100000] (imputed)	N
1648	chr3	139405841	139405842	rs9289581	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	3q23	NMNAT3	rs9289581-T	0.37	8E-6		0.0271	NR unit increase	NR [NR] (imputed)	N
1649	chr3	139496470	139496471	rs6772801	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q23		rs6772801-A	0.712	4E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1649	chr3	139540391	139540392	rs138395523	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q23	NR	rs138395523-A	NR	3E-8		5.534	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1649	chr3	139573504	139573505	rs9810764	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q23	NMNAT3	rs9810764-?	NR	3E-6	(PC 38:2)	0.30753645	[0.18-0.44] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1650	chr3	139606793	139606794	rs2554152	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q23	CLSTN2	rs2554152-G	0.89	7E-6	(overall)			Affymetrix, Illumina [2500000] (imputed)	N
1650	chr3	139696764	139696765	rs7628696	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q23	NR	rs7628696-?	NR	3E-7		5.146	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1650	chr3	139697294	139697295	rs1426040	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	3q23	NR	rs1426040-?	NR	7E-6				Illumina [1735619]	N
1650	chr3	139701000	139701001	rs9835073	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q23	Intergenic	rs9835073-T	0.4581	2E-9	(MTAG)	0.0137	[0.0092-0.0182] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr3	139703394	139703395	rs34903090	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3q23	NR	rs34903090-T	0.445328	3E-8		0.034812316	[0.022-0.047] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1650	chr3	139703394	139703395	rs34903090	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3q23	Intergenic	rs34903090-T	0.5419	3E-8		0.0159	[0.01-0.022] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
1650	chr3	139707088	139707089	rs17338318	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q23	Intergenic	rs17338318-C	0.6176	9E-9	(MTAG)	0.0078	[0.0051-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1650	chr3	139707088	139707089	rs17338318	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q23	NR	rs17338318-C	NR	3E-8		5.568	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
1650	chr3	139708740	139708741	rs59142272	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q23	NR	rs59142272-A	NR	7E-10		6.159	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1651	chr3	139732249	139732250	rs9289595	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q23	CLSTN2	rs9289595-A	NR	6E-6		0.8590727	[0.49-1.23] unit decrease	Illumina [> 6200000] (imputed)	N
1651	chr3	139776798	139776799	rs76486688	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	3q23	CLSTN2	rs76486688-A	0.015709424	7E-6		1.25974	[1.139259643-1.392961438]	Illumina [10439017] (imputed)	N
1651	chr3	139782952	139782953	rs78681665	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q23	NR	rs78681665-C	0.01742	2E-9	(ALDH5A1)	0.2375	NR unit increase	Illumina [1671387] (imputed)	N
1651	chr3	139811628	139811629	rs112448655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q23	CLSTN2	rs112448655-A	0.997	3E-7	(AA)	0.163	unit increase	Illumina [NR] (imputed)	N
1651	chr3	139811628	139811629	rs112448655	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q23	CLSTN2	rs112448655-A	0.997	1E-6	(AA)	0.777	NR unit increase	Illumina [NR] (imputed)	N
1651	chr3	139844244	139844245	rs4234482	31455332	Zhang Y	2019-08-28	BMC Med	Dissecting genetic factors affecting phenylephrine infusion rates during anesthesia: a genome-wide association study employing EHR data.	Phenylephrine infusion rate during anesthesia	1,534 European ancestry individuals	NA	3q23	CLSTN2, NMNAT3, LOC105374132	rs4234482-C	0.2661	2E-6		3.64	[5.15-2.14] unit decrease	Illumina [up to 4929806] (imputed)	N
1652	chr3	139866473	139866474	rs76347219	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q23	NR	rs76347219-?	NR	7E-7	(EA)	0.9717	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1653	chr3	139995125	139995126	rs77960860	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Asthma	819 African American non-allergic asthma cases, 2,218 African American allergic asthma cases 4,360 African American controls, 808 European American non-allergic asthma cases, 1,464 European American allergic asthma cases, 11,975 European American controls	NA	3q23	CLSTN2	rs77960860-?		2E-6	(AA)	0.521	[0.27-0.77] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1653	chr3	139996644	139996645	rs7635923	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	3q23	NR	rs7635923-?	0.4525	6E-6		0.048935	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1653	chr3	140044008	140044009	rs1479876	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine and valproic acid in genetic generalized epilepsy	31 European ancestry responders, 73 European ancestry non-responders	NA	3q23	CLSTN2	rs1479876-?	NR	4E-6				Affymetrix, Illumina [at least 3287443] (imputed)	N
1653	chr3	140078868	140078869	rs6789157	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (b* coordinate)	329 South Asian ancestry individuals		3q23	CLSTN2	rs6789157-T	0.467	3E-6		0.403	[0.24-0.57] unit increase	Illumina [640625] (imputed)	N
1653	chr3	140099692	140099693	rs17411949	23472185	Mero IL	2013-03-05	PLoS One	Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.	Multiple sclerosis (OCB status)	1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases	3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases	3q23	CLSTN2	rs17411949-?	NR	8E-7		1.85	[1.45-2.37]	Illumina [495970]	N
1654	chr3	140169656	140169657	rs6439924	24920014	Cozen W	2014-06-12	Nat Commun	A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus.	Hodgkin's lymphoma	1,816 European ancestry cases, 7,877 European ancestry controls	1,281 European ancestry cases, 3,218 European ancestry controls	3q23	CLSTN2	rs6439924-?	0.16	8E-7		1.23	[1.13-1.33]	Affymetrix, Illumina [1004829] (imputed)	N
1654	chr3	140175359	140175360	rs11708189	21658281	Aouizerat BE	2011-06-10	BMC Cardiovasc Disord	GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease.	Sudden cardiac arrest	88 European ancestry cases, 517 European ancestry controls	NA	3q23	CLSTN2	rs11708189-?	0.65	2E-6	(Dominant)	1.12	[1.07-1.18]	Affymetrix [319222]	N
1654	chr3	140223793	140223794	rs9862730	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Homeostasis model assessment of insulin resistance (dietary factor interaction)	820 European ancestry individuals	NA	3q23	CLSTN2	rs9862730-A	0.109	4E-6	(Carbohydrate)			Affymetrix [590000]	N
1654	chr3	140223793	140223794	rs9862730	24204828	Zheng JS	2013-10-28	PLoS One	Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.	Fasting insulin (dietary factor interaction)	820 European ancestry individuals	NA	3q23	CLSTN2	rs9862730-A	0.109	3E-6	(Carbohydrate)			Affymetrix [590000]	N
1655	chr3	140247176	140247177	rs4683505	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q23	CLSTN2	rs4683505-?	0.033	4E-7			[NR]	Affymetrix, Illumina [152234]	N
1655	chr3	140280105	140280106	rs115412284	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q23	NR	rs115412284-G	0.02265	2E-13	(WARS)	0.05736	NR unit increase	Illumina [1671387] (imputed)	N
1655	chr3	140305483	140305484	rs9812589	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q23	NR	rs9812589-?	NR	5E-6		1510.8749	NR unit increase	Illumina [2379855]	N
1655	chr3	140370011	140370012	rs72977016	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	TRIM42	rs72977016-?	NR	7E-9				NR [up to 8466825] (imputed)	N
1656	chr3	140417445	140417446	rs79436609	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	NR	rs79436609-?	NR	3E-8				NR [up to 8466825] (imputed)	N
1656	chr3	140422387	140422388	rs12638075	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	3q23	TRIM42, CLSTN2	rs12638075-C	0.014	5E-6	(EA, 25 years or older)	1.376	[1.200-1.577]	Affymetrix, Illumina [NR] (imputed)	N
1656	chr3	140493426	140493427	rs6772484	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q23	NR	rs6772484-?	NR	1E-10				Affymetrix [NR]	N
1657	chr3	140540717	140540718	rs908821	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	3q23	SLC25A36	rs908821-?	0.71	3E-6		1.37	[NR]	Illumina [551642]	N
1658	chr3	140676799	140676800	rs141220432	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	NR	rs141220432-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1658	chr3	140681912	140681913	rs150888153	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q23	NR	rs150888153-?	NR	4E-6				NR [up to 8466825] (imputed)	N
1659	chr3	140778295	140778298	rs142484554	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram in depression	2,963 European ancestry responder cases, 2,005 European ancestry non-responder cases	NA	3q23	SPSB4	rs142484554-?		3E-7		1.459854	[1.26-1.69]	Illumina [~ 12000000] (imputed)	N
1659	chr3	140784434	140784435	rs6804474	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	3q23	SPSB4	rs6804474-A	0.1556	4E-6		0.1556	[0.089-0.222] unit decrease	NR [NR] (imputed)	N
1659	chr3	140799212	140799213	rs16851055	24262325	Dichgans M	2013-11-21	Stroke	Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.	Ischemic stroke	12,389 cases, 62,004 controls	NA	3q23	SPSB4	rs16851055-?	NR	7E-7		1.1111	[1.06-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1659	chr3	140799212	140799213	rs16851055	23041239	Traylor M	2012-10-05	Lancet Neurol	Genetic risk factors for ischaemic stroke and its subtypes (the METASTROKE collaboration): a meta-analysis of genome-wide association studies.	Stroke (ischemic)	12,389 European ancestry cases, 62,004 European ancestry controls	1,322 Pakistani ancestry cases, 1,143 Pakistani ancestry controls, 12,025 European ancestry cases, 27,940 European ancestry controls	3q23	SPSB4	rs16851055-G	0.81	6E-7	(IS)	1.12	[1.07-1.17]	Affymetrix, Illumina [NR] (imputed)	N
1660	chr3	140926790	140926791	rs113799399	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q23		rs113799399-T	0.126345	2E-22		0.03277819	[0.026-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1660	chr3	140926790	140926791	rs113799399	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q23		rs113799399-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1660	chr3	140927120	140927121	rs143699489	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q23		rs143699489-G	0.12701	4E-11		0.022188202	[0.016-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1660	chr3	140927120	140927121	rs143699489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3q23	intergenic	rs143699489-G	0.1268	1E-9		0.03292191	[0.022-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
1660	chr3	140927120	140927121	rs143699489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3q23	intergenic	rs143699489-G	0.1269	1E-11		0.03656523	[0.026-0.047] unit increase	Affymetrix [~ 2500000] (imputed)	N
1660	chr3	140927120	140927121	rs143699489	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3q23	intergenic	rs143699489-G	0.1269	1E-11		0.03690768	[0.026-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
1660	chr3	140930448	140930449	rs59213384	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q23		rs59213384-G	NR	5E-21		0.0287	[0.023-0.035] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1660	chr3	140941085	140941086	rs16851151	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q23		rs16851151-T	0.127534	7E-10		0.02052184	[0.014-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1660	chr3	140957761	140957762	rs11712552	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q23	ACPL2	rs11712552-G	0.127061	9E-19		0.029413952	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1660	chr3	140957761	140957762	rs11712552	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs11712552-G	0.13831	4E-31				Affymetrix, Illumina [23114412] (imputed)	N
1660	chr3	140961653	140961654	rs111906841	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs111906841-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1660	chr3	140967444	140967444	rs200682696	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3q23	ACPL2	rs200682696-ATATG	0.6221	1E-11		0.02517578	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1660	chr3	140979410	140979411	rs16851254	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q23	ACPL2	rs16851254-?	0.0313	8E-6	(IED)			Illumina [475971]	N
1660	chr3	140987324	140987325	rs59752258	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	151,807 East Asian ancestry individuals	NA	3q23	NR	rs59752258-G	0.797224	1E-10		0.029574	[0.021-0.039] SD units decrease	Affymetrix, Illumina [16710636] (imputed)	N
1660	chr3	140992259	140992260	rs4683591	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	154,355 East Asian ancestry individuals	NA	3q23		rs4683591-A	0.204365	2E-8		0.0237622	[0.016-0.032] unit increase	Illumina [13479091] (imputed)	N
1660	chr3	140995961	140995962	rs12631017	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q23	ZBTB38	rs12631017-?	NR	9E-6	(cyclic adenosine monophosphate)	0.3216414	[0.18-0.46] unit increase	Affymetrix [at least 2500000] (imputed)	N
1660	chr3	141008122	141008123	rs1567558	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	3q23	ACPL2, RP11-438D8.2	rs1567558-G	0.5985	2E-11		0.02547235	[0.018-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1660	chr3	141008122	141008123	rs1567558	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	3q23	ACPL2, RP11-438D8.2	rs1567558-G	0.5985	4E-11		0.02498458	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1661	chr3	141034216	141034217	rs4306833	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q23	PXYLP1, RP11-438D8.2	rs4306833-A	0.5618	6E-7		0.0463	[0.028-0.065] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141047071	141047072	rs6795197	26915486	Adams JN	2016-02-23	Gene	Genetic analysis of advanced glycation end products in the DHS MIND study.	Advanced glycation end-product levels	399 diabetes cases, 107 non-diabetes controls from 240 families	NA	3q23	ZBTB38	rs6795197-?	NR	8E-6		0.131	[0.074-0.188] unit decrease	Affymetrix [371951]	N
1661	chr3	141049320	141049321	rs1983233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs1983233-T	NR	2E-11		0.0190073	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141049963	141049964	rs1983235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs1983235-T	NR	2E-14		0.0218151	[0.016-0.027] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141049963	141049964	rs1983235	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	RP11-438D8.2, ZBTB38	rs1983235-T	NR	2E-14		0.0237483	[0.018-0.03] unit increase	Affymetrix [323123] (imputed)	N
1661	chr3	141053278	141053279	rs28721484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q23	PXYLP1, RP11-438D8.2, ZBTB38	rs28721484-T	0.1946	6E-8		0.0541	[0.034-0.074] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141053278	141053279	rs28721484	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	PXYLP1, RP11-438D8.2, ZBTB38	rs28721484-T	0.1943	5E-15		0.0832	[0.062-0.104] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141053689	141053690	rs9829470	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs9829470-G	NR	1E-10		0.019549	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141055928	141055929	rs73232975	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	3q23	PXYLP1, RP11-438D8.2, ZBTB38	rs73232975-T	0.0076	5E-6		0.3147	[0.18-0.45] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141058686	141058687	rs4683602	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q23	ACPL2	rs4683602-?	NR	9E-6	(PC 38:2)	0.3399583	[0.19-0.49] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1661	chr3	141059786	141059788	rs55768579	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	PXYLP1, RP11-438D8.2, ZBTB38	rs55768579-A	0.1773	5E-10		0.0745	[0.051-0.098] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141063952	141063953	rs9838625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q23	RP11-438D8.2, ZBTB38	rs9838625-T	NR	3E-10		0.0197293	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141063952	141063953	rs9838625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs9838625-T	NR	2E-33		0.0344228	[0.029-0.04] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141063952	141063953	rs9838625	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	RP11-438D8.2, ZBTB38	rs9838625-T	NR	2E-31		0.0362474	[0.03-0.042] unit increase	Affymetrix [323123] (imputed)	N
1661	chr3	141064549	141064550	rs56172250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q23	NR	rs56172250-A	NR	2E-10		0.0356	[0.025-0.047] unit decrease	Affymetrix [9000000] (imputed)	N
1661	chr3	141064549	141064550	rs56172250	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q23	NR	rs56172250-A	NR	6E-11		0.0374	[0.026-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
1661	chr3	141067087	141067088	rs34655123	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs34655123-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1661	chr3	141067583	141067584	rs6781636	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q23	RP11-438D8.2, ZBTB38	rs6781636-A	NR	6E-11		0.0210703	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141072288	141072289	rs1346408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q23		rs1346408-T	NR	2E-12		0.012	[0.0087-0.0153] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1661	chr3	141072288	141072289	rs1346408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q23		rs1346408-T	NR	1E-12		0.0123	[0.009-0.0156] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1661	chr3	141072288	141072289	rs1346408	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs1346408-?	NR	1E-300				NR [~ 8900000] (imputed)	N
1661	chr3	141076083	141076084	rs9866391	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs9866391-C	NR	1E-15		0.0232388	[0.018-0.029] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141076083	141076084	rs9866391	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Myopia	106,086 European ancestry cases, 85,757 European ancestry controls	NA	3q23	ZBTB38	rs9866391-?	NR	8E-19		1.069	[1.053-1.084]	Illumina [13762925] (imputed)	N
1661	chr3	141078187	141078188	rs9857275	34639784	Chen TH	2021-10-06	Int J Environ Res Public Health	The Mediation Effects of Aluminum in Plasma and Dipeptidyl Peptidase Like Protein 6 (DPP6) Polymorphism on Renal Function via Genome-Wide Typing Association.	Aluminium levels	494 Han Chinese ancestry individuals	NA	3q23		rs9857275-?	NR	8E-8				NR [615681]	N
1661	chr3	141078187	141078188	rs9857275	22210626	Mead S	2011-12-30	Hum Mol Genet	Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.	Prion diseases	1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls	NA	3q23	ZBTB38, RASA2	rs9857275-?	NR	2E-6		1.28	[NR]	Illumina [NR] (imputed)	N
1661	chr3	141082989	141082990	rs13100711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RP11-438D8.2, ZBTB38	rs13100711-T	NR	6E-35		0.0371789	[0.031-0.043] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141082989	141082990	rs13100711	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	RP11-438D8.2, ZBTB38	rs13100711-T	NR	2E-25		0.0341545	[0.028-0.041] unit increase	Affymetrix [323123] (imputed)	N
1661	chr3	141091594	141091595	rs13098180	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q23	ZBTB38	rs13098180-A	0.3814	4E-12		0.01595379	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1661	chr3	141092049	141092050	rs4683603	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q23	ZBTB38	rs4683603-T	0.411702	3E-11		0.015063389	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1661	chr3	141092049	141092050	rs4683603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs4683603-T	0.360799	1E-12				Affymetrix, Illumina [24653286] (imputed)	N
1661	chr3	141092049	141092050	rs4683603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs4683603-T	0.36249	3E-14				Affymetrix, Illumina [24558453] (imputed)	N
1661	chr3	141092049	141092050	rs4683603	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q23	NR	rs4683603-T	0.411052	1E-16		0.015598	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
1661	chr3	141093284	141093285	rs7624084	33510174	Jones G	2021-01-28	Nat Commun	Genome-wide meta-analysis of muscle weakness identifies 15 susceptibility loci in older men and women.	Low hand grip strength (60 years and older) (EWGSOP)	48,596 European ancestry cases, 207,927 European ancestry controls	NA	3q23	ZBTB38	rs7624084-T	0.5577	9E-9		0.0428	[0.028-0.057] unit increase	Affymetrix, Illumina [9457422] (imputed)	N
1661	chr3	141093284	141093285	rs7624084	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q23	ZBTB38	rs7624084-T	0.5767	6E-12		0.0017	[0.0011-0.0023] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1661	chr3	141093284	141093285	rs7624084	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3q23	ZBTB38	rs7624084-T	0.5676	1E-18		8.811	[NR] z score decrease	Affymetrix, Illumina [~ 11000000] (imputed)	N
1661	chr3	141093284	141093285	rs7624084	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Myopia (age of diagnosis)	104,293 European ancestry individuals	NA	3q23	NR	rs7624084-T	0.5679	7E-16		0.0573	[0.043-0.071] unit decrease	Illumina [~ 10600000] (imputed)	N
1661	chr3	141093284	141093285	rs7624084	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q23	ZBTB38	rs7624084-T	0.5612	1E-13		0.0483	[0.036-0.061] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	ZBTB38	rs6440003-A	NR	6E-51		0.0461675	[0.04-0.052] unit increase	Affymetrix [323123] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q23	NR	rs6440003-?	NR	8E-16		0.05009948	[0.038-0.062] unit increase	Illumina [34656550] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q23	TFDP2	rs6440003-A	0.408	4E-10		0.406	[0.22-0.59] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs6440003-A	0.443	3E-10	(EA)	0.0215	[0.015-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs6440003-A	0.443	1E-6	(EA, men)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	3q23	ZBTB38	rs6440003-A	0.81	2E-10		0.065	[0.045-0.085] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
1661	chr3	141094208	141094209	rs6440003	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	3q23	ZBTB38	rs6440003-A	0.44	2E-24		0.07	[0.04-0.09] s.d. increase (males)	Affymetrix [402951]	N
1661	chr3	141094768	141094769	rs4683605	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3q23	ZBTB38	rs4683605-A	0.4464	5E-58		1.131	NR	Affymetrix [9154080] (imputed)	N
1661	chr3	141095371	141095372	rs13067032	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Hyperopia	10,828 European ancestry hyperopia cases, 21,416 European ancestry emmetropia controls	NA	3q23	NR	rs13067032-?	NR	3E-6		0.0854251	[0.049-0.121] unit increase	NR [13958389] (imputed)	N
1661	chr3	141100279	141100280	rs6764769	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q23	NR	rs6764769-A	0.555778	2E-15		0.015192	[0.011-0.019] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1661	chr3	141101838	141101839	rs56243018	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q23	NR	rs56243018-C	0.046	9E-16		0.0833	[0.063-0.104] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q23	ZBTB38	rs9853018-T		1E-11		0.015	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3q23	RASA2, ZBTB38	rs9853018-T	0.446426	5E-64	(females)	0.05512	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3q23	RASA2, ZBTB38	rs9853018-T	0.446426	2E-30		0.02694	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3q23	RASA2, ZBTB38	rs9853018-T	0.446426	2E-28		0.02541	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3q23	RASA2, ZBTB38	rs9853018-T	0.446426	1E-50	(females)	0.04739	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1661	chr3	141101960	141101961	rs9853018	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	3q23	RASA2, ZBTB38	rs9853018-T	0.446426	5E-8	(females)	0.0222	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
1661	chr3	141102559	141102560	rs75367758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q23		rs75367758-A	NR	3E-16		0.0438	[0.033-0.054] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q23	ZBTB38	rs6763931-A	0.444331	4E-10		0.013981241	[0.0096-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q23	NR	rs6763931-?	NR	9E-16		0.04994899	[0.038-0.062] unit increase	Illumina [34656550] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q23	NR	rs6763931-A	0.44	7E-8		1.04	[1.03-1.06]	Illumina [20370935] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3q23	ZBTB38	rs6763931-A	0.33	6E-34		0.055	[0.043-0.067] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	25221879	Wu K	2014-09-15	Am J Respir Crit Care Med	Genome-wide interrogation of longitudinal FEV1 in children with asthma.	Pulmonary function in asthmatics	510 European ancestry	NA	3q23	ZBTB38	rs6763931-A	0.43	4E-6	(Baseline FEV1)	0.024	[NR] unit increase	Illumina [473680]	N
1661	chr3	141102832	141102833	rs6763931	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	3q23	ZBTB38	rs6763931-T	0.45	2E-8		1.04	[1.01-1.07]	NR [2600000] (imputed)	N
1661	chr3	141102832	141102833	rs6763931	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	3q23	ZBTB38	rs6763931-?	0.35	3E-12		0.07	[0.05-0.09] s.d. increase	Illumina [229216]	N
1661	chr3	141102832	141102833	rs6763931	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	3q23	ZBTB38	rs6763931-A	0.45	1E-27		7.4	[6.03-8.77] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1661	chr3	141104179	141104180	rs6767786	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	ZBTB38	rs6767786-A	NR	4E-16		0.0243016	[0.018-0.03] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141104179	141104180	rs6767786	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q23	ZBTB38, RASA2	rs6767786-?		1E-57				Affymetrix, Illumina [NR] (imputed)	N
1661	chr3	141105569	141105570	rs724016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q23		rs724016-G	NR	2E-91		0.0339	[0.031-0.037] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1661	chr3	141105569	141105570	rs724016	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	3q23	ZBTB38	rs724016-?	NR	5E-13		0.55	[0.39-0.71] unit increase	Affymetrix [5682219] (imputed)	N
1661	chr3	141105569	141105570	rs724016	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q23	NR	rs724016-G	0.444822	1E-9		0.0402492	[0.027-0.054] unit increase	Affymetrix [17914406] (imputed)	N
1661	chr3	141105569	141105570	rs724016	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q23	NR	rs724016-?	NR	2E-15		0.04802353	[0.036-0.06] unit increase	Illumina [34656550] (imputed)	N
1661	chr3	141105569	141105570	rs724016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q23	NR	rs724016-?	NR	9E-34	(male)	0.42397	[0.36-0.49] unit increase	Affymetrix [7794483] (imputed)	N
1661	chr3	141105569	141105570	rs724016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q23	NR	rs724016-?	NR	4E-20	(female)	0.22265	[0.18-0.27] unit increase	Affymetrix [7794483] (imputed)	N
1661	chr3	141105569	141105570	rs724016	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q23	NR	rs724016-?	NR	2E-51		0.33409	[0.29-0.38] unit increase	Affymetrix [7794483] (imputed)	N
1661	chr3	141105569	141105570	rs724016	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	ZBTB38	rs724016-A	0.5637	4E-32		0.0807	[0.067-0.094] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141105569	141105570	rs724016	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3q23	ZBTB38	rs724016-?		8E-8				Illumina [9560910] (imputed)	N
1661	chr3	141105569	141105570	rs724016	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	3q23	intergenic	rs724016-G	0.4413	3E-6	(EA)	1.0572861	[1.03-1.08]	Affymetrix, Illumina [~ 9000000] (imputed)	N
1661	chr3	141105569	141105570	rs724016	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs724016-A	0.5572	8E-43	(EA)	0.0483	[0.041-0.055] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141105569	141105570	rs724016	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs724016-A	0.5572	2E-22	(EA, women)	0.0439	[0.035-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141105569	141105570	rs724016	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs724016-A	0.5572	1E-26	(EA,men)	0.0545	[0.045-0.064] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141105569	141105570	rs724016	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q23	ZBTB38	rs724016-A	0.555	3E-158		0.078	[0.072-0.084] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1661	chr3	141105569	141105570	rs724016	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	3q23	ZBTB38	rs724016-A	0.453	4E-7		0.044	[0.026-0.062] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
1661	chr3	141105569	141105570	rs724016	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q23	ZBTB38	rs724016-A	0.56	3E-86		0.07	[NR] unit decrease	Affymetrix, Illumina [2834208] (imputed)	N
1661	chr3	141105569	141105570	rs724016	18391950	Lettre G	2008-04-06	Nat Genet	Identification of ten loci associated with height highlights new biological pathways in human growth.	Height	15,821 European ancestry individuals	Up to 17,801 European ancestry individuals	3q23	ZBTB38	rs724016-G	0.48	8E-22		0.37	[0.29-0.45] cm increase	Affymetrix, Illumina [2260683] (imputed)	N
1661	chr3	141105569	141105570	rs724016	18193045	Sanna S	2008-01-13	Nat Genet	Common variants in the GDF5-UQCC region are associated with variation in human height.	Height	1,084 European ancestry cases, 1,287 European ancestry controls, 4,298 European individuals	23,684 European ancestry individuals, 3,860 African American individuals	3q23	ZBTB38	rs724016-G	0.36	1E-6		0.61	[NR] cm increase	Affymetrix, Illumina [~ 2261000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q23	NR	rs7632381-C	0.4475	3E-10		1.035	[1.024-1.046]	Affymetrix [15688218] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4504	3E-13	(men)	0.039	[0.029-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4504	1E-11	(women)	0.0361	[0.026-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4385	5E-12	(EA, men)	0.0386	[0.028-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,288 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,681 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4396	4E-6		0.0323	[0.019-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	ZBTB38	rs7632381-C	0.46230000000000004	7E-9	(women)	0.0349	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4415	3E-10	(men)	0.038	[0.026-0.05] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	ZBTB38	rs7632381-C	0.4396	3E-9	(EA, men)	0.0367	[0.025-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs7632381-?	0.4504	2E-13	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs7632381-?	0.4504	2E-11	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs7632381-T	0.5567	5E-24	(EA)	0.0358	[0.029-0.043] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs7632381-T	0.5567	3E-16	(EA, men)	0.0404	[0.031-0.05] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141106062	141106063	rs7632381	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs7632381-T	0.5567	2E-11	(EA,women)	0.0309	[0.022-0.04] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141106953	141106954	rs13077048	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	ZBTB38	rs13077048-T	NR	1E-21		0.0277166	[0.022-0.033] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141106953	141106954	rs13077048	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q23	ZBTB38	rs13077048-T	0.43	1E-12				NR [> 9500000] (imputed)	N
1661	chr3	141106953	141106954	rs13077048	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q23	ZBTB38	rs13077048-T	0.42690300000000003	3E-10		1.0395259	[1.02712038093014-1.05208123436372]	NR [9572556] (imputed)	N
1661	chr3	141108337	141108338	rs55715288	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q23		rs55715288-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1661	chr3	141109320	141109321	rs6808936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	ZBTB38	rs6808936-G	NR	4E-62		0.0470315	[0.041-0.053] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	34116867	Tanaka N	2021-06-02	J Allergy Clin Immunol	Eight novel susceptibility loci and putative causal variants in atopic dermatitis.	Atopic dermatitis	2,597 Japanese ancestry cases, 110,504 Japanese ancestry controls, 25,685 European ancestry cases, 76,768 European ancestry controls	NA	3q23		rs6785012-?	NR	3E-9		1.06	[1.04-1.08]	Illumina [5170515] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3q23	ZBTB38	rs6785012-T	0.814	7E-13	(AA)	0.062	[0.044-0.08] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3q23	ZBTB38	rs6785012-T		3E-157				Affymetrix, Illumina [17972582] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	3q23	ZBTB38	rs6785012-T	0.815	7E-10	(AA)	0.065	[0.043-0.087] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q23		rs6785012-?	NR	5E-62				NR [~ 8900000] (imputed)	N
1661	chr3	141109347	141109348	rs6785012	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q23		rs6785012-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1661	chr3	141112869	141112871	rs34207738	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3q23		rs34207738-CTT	NR	2E-15		0.95	[0.94-0.96]	Affymetrix, Illumina [NR] (imputed)	N
1661	chr3	141112869	141112871	rs34207738	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q23	ZBTB38	rs34207738-C	0.41	3E-15	(EA)	1.06	[1.04-1.08] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1661	chr3	141112870	141112872	rs200235318	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	ZBTB38	rs200235318-T	0.1203	8E-11		0.0958	[0.067-0.125] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141114012	141114013	rs114097136	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	ZBTB38	rs114097136-G	NR	2E-8		0.0331597	[0.022-0.045] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141114012	141114013	rs114097136	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	ZBTB38	rs114097136-C	0.9413	4E-7		0.0822	[0.051-0.114] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1661	chr3	141114292	141114293	rs6807935	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q23	ZBTB38	rs6807935-A	0.656725	1E-9		0.0126318	[0.0086-0.0167] unit increase	Affymetrix [NR] (imputed)	N
1661	chr3	141115218	141115219	rs1582874	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q23	Intergenic	rs1582874-T	0.5695	7E-10	(MTAG)	0.0103	[0.007-0.0136] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr3	141118231	141118232	rs74888405	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q23		rs74888405-C	0.303595	4E-87		0.0432464	[0.039-0.048] unit increase	Illumina [13479295] (imputed)	N
1661	chr3	141118231	141118232	rs74888405	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q23	ZBTB38	rs74888405-?	NR	4E-106		0.06781929	[0.062-0.074] unit increase	Illumina [27896057] (imputed)	N
1661	chr3	141121813	141121814	rs2871960	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q23		rs2871960-C	NR	5E-356		0.0524	[0.05-0.055] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1661	chr3	141121813	141121814	rs2871960	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q23	ZBTB38	rs2871960-A	0.5552	2E-135		0.0469	[0.043-0.051] unit decrease	Affymetrix [18391927] (imputed)	N
1661	chr3	141121813	141121814	rs2871960	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q23	ZBTB38	rs2871960-C	0.445111	6E-15		0.017366255	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1661	chr3	141121813	141121814	rs2871960	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs2871960-?	0.44120000000000004	3E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141124606	141124607	rs2011092	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3q23	NR	rs2011092-C	0.338643	7E-9	(Conditioned on chr3:141267295)	0.008900405	[0.0059-0.0119] unit decrease	NR [~ 10000000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Lectin-like oxidized LDL receptor 1 levels	21,758 European ancestry individuals	9,173 individuals	3q23		rs1344674-A	0.56	2E-19		0.0751	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q23	NR	rs1344674-G	0.4489	2E-11		1.041	[1.029-1.053]	Affymetrix [15688218] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	6E-6		0.0329	[0.019-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	5E-11	(men)	0.038	[0.027-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	4E-11		0.0258	[0.018-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	2E-13	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	1E-14				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	8E-15		0.0268	[0.02-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	ZBTB38	rs1344674-A	0.5451	2E-14	(men)	0.0379	[0.028-0.048] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs1344674-A	0.5551	4E-13	(EA)	0.024	[0.018-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141125185	141125186	rs1344674	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q23	ZBTB38	rs1344674-A	0.5551	1E-11	(EA, men)	0.0323	[0.023-0.042] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1661	chr3	141125438	141125439	rs6767899	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3q23	NR	rs6767899-?	NR	5E-9		0.124637	[0.083-0.166] unit decrease	NR [13958389] (imputed)	N
1661	chr3	141125438	141125439	rs6767899	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q23	NR	rs6767899-?	NR	6E-25				Affymetrix [~ 8270000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q23	ZBTB38	rs1344672-G	NR	2E-18		0.0271641	[0.021-0.033] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3q23		rs1344672-C	0.550034	7E-12		0.0616423	[0.044-0.08] decrease	Affymetrix [11014269] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q23		rs1344672-?	NR	7E-92				NR [~ 8900000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs1344672-G	0.4497	8E-12		0.0242	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs1344672-G	0.43720000000000003	2E-10	(EA)	0.0239	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	ZBTB38	rs1344672-G	0.4497	8E-8		0.0228	[0.015-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	ZBTB38	rs1344672-G	0.43720000000000003	2E-7	(EA)	0.0226	[0.014-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs1344672-?	0.4497	2E-11				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141125704	141125705	rs1344672	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	ZBTB38	rs1344672-?	0.43720000000000003	5E-12	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1661	chr3	141130834	141130835	rs35225290	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Brown vs. black hair color	269,394 British ancestry brown hair individuals, 14,526 British ancestry black hair individuals	NA	3q23	ZBTB38	rs35225290-T	0.3448	7E-15		1.106	NR	Affymetrix [9154080] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q23	NR	rs1991431-?	NR	8E-15		0.0465794	[0.035-0.058] unit increase	Illumina [34656550] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q23	ZBTB38	rs1991431-G	0.555891	1E-21		0.0177973	[0.014-0.021] unit increase	NR [13737936] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q23		rs1991431-?	NR	8E-26				NR [~ 8900000] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q23		rs1991431-?	NR	2E-17		0.0171514	[0.013-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	3q23	ZBTB38	rs1991431-A	0.4338	5E-13		0.0048911655	[0.0036-0.0062] m increase	Illumina [24111857] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	28139693	Hoffmann TJ	2017-01-31	Nat Commun	Genome-wide association study of prostate-specific antigen levels identifies novel loci independent of prostate cancer.	Prostate-specific antigen levels (conditioned on lead SNPs)	28,503 European ancestry individuals	2,716 Latino individuals, 2,518 East Asian ancestry individuals, 1,585 African American individuals, 6,193 European ancestry individuals (later diagnosed with prostate cancer)	3q23	ZBTB38	rs1991431-?	0.43	3E-11	(conditional on Round 1 SNPs)	0.037	unit increase	Affymetrix [10109774] (imputed)	N
1661	chr3	141133449	141133450	rs1991431	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q23	ZBTB38	rs1991431-A	0.44	4E-47		1.33	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1661	chr3	141134343	141134344	rs73872715	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q23	NR	rs73872715-C		6E-6		0.5962	[0.34-0.85] SD units increase	NR [10700000] (imputed)	N
1661	chr3	141134568	141134569	rs73872717	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q23	NR	rs73872717-C	0.9534	5E-15		0.0856	[0.064-0.107] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1661	chr3	141134817	141134818	rs16851397	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q23	ZBTB38	rs16851397-A	0.953	1E-12		0.0327	[0.024-0.041] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
1661	chr3	141134817	141134818	rs16851397	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q23	ZBTB38	rs16851397-A	0.9533	9E-7		0.5	mmHg decrease	Illumina [242296]	N
1661	chr3	141134817	141134818	rs16851397	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q23	ZBTB38	rs16851397-A	0.9448	4E-9		0.3651	[0.24-0.49] mmHg decrease	Illumina [242296]	N
1661	chr3	141135125	141135126	rs11919595	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	3q23	ZBTB38	rs11919595-T	0.919	1E-8		0.0248	[0.016-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1661	chr3	141137034	141137035	rs9825379	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	3q23	ZBTB38	rs9825379-A	0.24	6E-9		0.07	[0.05-0.09] cm increase	Illumina [420885]	N
1661	chr3	141140365	141140366	rs6763927	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3q23	ZBTB38	rs6763927-T	0.44	3E-9				Illumina [5041948] (imputed)	N
1661	chr3	141140365	141140366	rs6763927	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs6763927-A	0.554621	2E-14				Affymetrix, Illumina [17210439] (imputed)	N
1661	chr3	141140967	141140968	rs9846396	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3q23		rs9846396-T	NR	2E-7		1.0438414	[1.03-1.06]	Affymetrix [7846216] (imputed)	N
1661	chr3	141140967	141140968	rs9846396	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	3q23	NR	rs9846396-T	0.4582	3E-8		0.06058465	[0.039-0.082] z score increase	NR [1977400] (imputed)	N
1661	chr3	141140967	141140968	rs9846396	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	3q23	NR	rs9846396-T	0.425	4E-8		0.032255378	[0.021-0.044] unit increase	NR [1977400] (imputed)	N
1661	chr3	141140967	141140968	rs9846396	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q23	ZBTB38	rs9846396-G	0.57	8E-8		1.07	[1.04-1.09]	Illumina [161311]	N
1661	chr3	141141309	141141310	rs16851416	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	ZBTB38	rs16851416-T	NR	4E-8		0.0328066	[0.021-0.045] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141142690	141142691	rs6440006	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q23		rs6440006-G	0.552	3E-30		0.13	[0.11-0.15] % increase	Affymetrix [NR] (imputed)	N
1661	chr3	141142690	141142691	rs6440006	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q23	ZBTB38	rs6440006-A	0.447723	4E-12		0.021224	[0.015-0.027] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1661	chr3	141143429	141143430	rs10513137	31902109	Li D	2020-01-04	Genes Genomics	Progressive effects of single-nucleotide polymorphisms on 16 phenotypic traits based on longitudinal data.	Physiological traits	up to 6,835 Korean ancestry individuals	NA	3q23	ZBTB38	rs10513137-A	0.2585	5E-7	(height)	0.5194	NR unit increase	Affymetrix [305158]	N
1661	chr3	141143429	141143430	rs10513137	19893584	Kim JJ	2009-11-06	J Hum Genet	Identification of 15 loci influencing height in a Korean population.	Height	8,842 Korean ancestry individuals	NA	3q23	ACPL2, ZBTB38	rs10513137-A	0.26	8E-8		0.49	[NR] cm increase	Affymetrix [334546]	N
1661	chr3	141143429	141143430	rs10513137	19396169	Cho YS	2009-04-26	Nat Genet	A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.	Height	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	3q23	ZBTB38	rs10513137-A	0.26	6E-12		0.46	[0.33-0.59] cm increase	Affymetrix [2156535] (imputed)	N
1661	chr3	141144407	141144408	rs55788564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3q23		rs55788564-G	NR	9E-9		0.0325	[0.022-0.043] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q23	NR	rs7650602-C	NR	5E-13		1.049	[1.04-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	1E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	3E-8			[NR]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	1E-8		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	2E-8			[NR]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	8E-9		1.07	[1.05-1.1]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in never smokers	8,631 European ancestry cases, 120,544 European ancestry controls	NA	3q23	NR	rs7650602-C	0.45	1E-6		1.08	[1.05-1.12]	Affymetrix [9886854] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q23	ZBTB38	rs7650602-C	0.449398	1E-32		0.027165322	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	ZBTB38	rs7650602-C	0.449315	4E-25		0.023927037	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3q23	ZBTB38	rs7650602-C	0.45	5E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [6224355] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q23		rs7650602-?	NR	2E-18				NR [~ 8900000] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q23	NR	rs7650602-C	0.449023	9E-36		0.0390429	[0.033-0.045] unit decrease	NR [19129689] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q23		rs7650602-T	0.5599	3E-10		0.0089	[0.0062-0.0116] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q23	Intergenic	rs7650602-T	0.5599	8E-11	(MTAG)	0.0086	[0.0061-0.0111] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	3q23	ZBTB38	rs7650602-C	0.4495	2E-9		0.02187854	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1661	chr3	141147413	141147414	rs7650602	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3q23	ZBTB38	rs7650602-C	0.4495	2E-15		0.02903412	[0.022-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
1661	chr3	141148418	141148419	rs13069734	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Spherical equivalent	95,827 European ancestry individuals	NA	3q23	NR	rs13069734-A		4E-18		0.1	[0.08-0.12] unit increase	NR [NR]	N
1661	chr3	141149286	141149287	rs1978600	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	ZBTB38	rs1978600-T	NR	1E-8		0.0350661	[0.023-0.047] unit decrease	Affymetrix [323123] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q23		rs7625643-G	NR	1E-17		0.0184	[0.014-0.023] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q23	ZBTB38	rs7625643-G	0.445649	2E-20		0.020925023	[0.017-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q23	ZBTB38	rs7625643-G	0.445649	4E-28		0.024772868	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs7625643-G	0.433762	2E-35				Affymetrix, Illumina [23472807] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q23	NR	rs7625643-G	0.444431	2E-36		0.024999	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q23	ZBTB38	rs7625643-?	NR	5E-9		1.044	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q23	ZBTB38	rs7625643-G	NR	3E-8		1.039	[1.03-1.05]	Affymetrix [9000000] (imputed)	N
1661	chr3	141150025	141150026	rs7625643	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3q23	ZBTB38	rs7625643-G	0.4457	8E-21		0.03400545	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1661	chr3	141150989	141150990	rs6789653	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q23	ZBTB38	rs6789653-G	NR	1E-9		1.0595	NR	Affymetrix, Illumina [8278136] (imputed)	N
1661	chr3	141153544	141153545	rs75206890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q23		rs75206890-C	NR	4E-16		0.0476	[0.036-0.059] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1661	chr3	141154541	141154542	rs6440008	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q23		rs6440008-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1661	chr3	141154541	141154542	rs6440008	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q23		rs6440008-T	0.6205	3E-10	(conditional-joint)	0.0091	[0.0064-0.0118] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1661	chr3	141154541	141154542	rs6440008	29662168	Hysi PG	2018-04-16	Nat Genet	Genome-wide association meta-analysis of individuals of European ancestry identifies new loci explaining a substantial fraction of hair color variation and heritability.	Hair color	290,891 European ancestry individuals	27,865 European ancestry individuals	3q23	ZBTB38	rs6440008-T	0.382	5E-54		0.043	[0.037-0.049] unit increase	Affymetrix, Illumina [at least 560000] (imputed)	N
1661	chr3	141154541	141154542	rs6440008	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q23	RASA2, ZBTB38	rs6440008-C	NR	6E-9		0.0372228	NR unit decrease	NR [NR] (imputed)	N
1661	chr3	141158211	141158212	rs7612543	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q23	ZBTB38	rs7612543-T	NR	1E-8		0.0176781	[0.012-0.024] unit increase	Affymetrix [321114] (imputed)	N
1661	chr3	141158613	141158614	rs7636914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	ZBTB38	rs7636914-G	NR	8E-27		0.0316301	[0.026-0.037] unit increase	Affymetrix [321016] (imputed)	N
1661	chr3	141158613	141158614	rs7636914	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	ZBTB38	rs7636914-G	NR	2E-25		0.0335321	[0.027-0.04] unit increase	Affymetrix [323123] (imputed)	N
1661	chr3	141160881	141160882	rs7626871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	3q23		rs7626871-G	0.304592	7E-10		0.0249848	[0.017-0.033] unit increase	Illumina [13477433] (imputed)	N
1661	chr3	141162127	141162128	rs62282002	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	3q23	ZBTB38	rs62282002-?	NR	6E-9		0.0264	[0.017-0.035] unit increase novel	Illumina [6108953] (imputed)	N
1662	chr3	141169111	141169112	rs16851438	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	3q23	ZBTB38	rs16851438-?	NR	1E-9		0.02854	[0.019-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1662	chr3	141169981	141169982	rs9878347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	3q23		rs9878347-A	0.570175	4E-9		0.0245761	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1662	chr3	141169981	141169982	rs9878347	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	3q23		rs9878347-A	0.570175	3E-9		0.0245929	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
1662	chr3	141169981	141169982	rs9878347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	ZBTB38	rs9878347-C	NR	2E-22		0.0301702	[0.024-0.036] unit increase	Affymetrix [323123] (imputed)	N
1662	chr3	141174955	141174956	rs1077181	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	ZBTB38	rs1077181-A	NR	6E-12		0.0210653	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
1662	chr3	141175619	141175620	rs1863867	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q23		rs1863867-C	0.351878	1E-36		0.0361744	[0.031-0.042] unit increase	Illumina [13479924] (imputed)	N
1662	chr3	141175619	141175620	rs1863867	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	3q23	ZBTB38-RASA2	rs1863867-?	NR	8E-10		0.47	[0.31-0.63] unit increase	Affymetrix [5682219] (imputed)	N
1662	chr3	141178669	141178670	rs9289630	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3q23		rs9289630-C	0.39	6E-8		0.01	nmol/L decrease	NR [NR] (imputed)	N
1662	chr3	141178669	141178670	rs9289630	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q23		rs9289630-C	0.39	5E-15				NR [NR] (imputed)	N
1662	chr3	141178669	141178670	rs9289630	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q23		rs9289630-C	0.39	5E-17		0.012	% increase	NR [NR] (imputed)	N
1662	chr3	141188044	141188045	rs4067991	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	KRT18P35	rs4067991-T	0.8149	1E-6		0.0443	[0.026-0.062] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1662	chr3	141188398	141188399	rs2312193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q23	NR	rs2312193-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1662	chr3	141196646	141196647	rs13072100	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	3q23		rs13072100-G	0.681378	2E-8		0.025067	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1662	chr3	141202933	141202934	rs138685654	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q23		rs138685654-C	NR	1E-18		0.0248	[0.019-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1662	chr3	141202982	141202983	rs200516372	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3q23	RASA2	rs200516372-G	0.0505	1E-11		0.05996357	[0.043-0.077] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141203648	141203649	rs78337796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q23	NR	rs78337796-C	NR	5E-14		0.0557	[0.041-0.07] unit decrease	Affymetrix [9000000] (imputed)	N
1662	chr3	141203648	141203649	rs78337796	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q23	NR	rs78337796-C	NR	3E-20		0.0681	[0.054-0.083] unit decrease	Affymetrix [9000000] (imputed)	N
1662	chr3	141204390	141204391	rs62282006	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	RASA2	rs62282006-T	0.2961	5E-6		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q23		rs9819371-T	NR	1E-18		0.0426	[0.033-0.052] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q23		rs9819371-T	NR	6E-22		0.0492	[0.039-0.059] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3q23		rs9819371-C	0.935	1E-10				Affymetrix [10369434] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3q23		rs9819371-C	0.935	2E-10				Affymetrix [10369434] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q23	RASA2	rs9819371-T	0.064547	3E-26		0.047529094	[0.039-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q23	RASA2	rs9819371-T	0.0645480000000001	2E-25		0.04688146	[0.038-0.056] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3q23	RASA2	rs9819371-T	0.06457	5E-13		0.03260007	[0.024-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs9819371-T	0.0639482	7E-31				Affymetrix, Illumina [24649327] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q23	NR	rs9819371-T	0.064757	6E-32		0.044448	[0.037-0.052] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q23	NR	rs9819371-T	0.064869	4E-28		0.043123	[0.035-0.051] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs9819371-T	0.0638743	5E-10				Affymetrix, Illumina [19905671] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3q23	NR	rs9819371-T	0.064572	7E-13		0.0301	[0.022-0.038] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q23		rs9819371-?	NR	2E-24				NR [~ 8900000] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3q23	RASA2	rs9819371-T	0.065	9E-10		0.04457167	[0.03-0.059] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	3q23	RASA2	rs9819371-T	0.065	6E-9		0.04238032	[0.028-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	3q23	RASA2	rs9819371-T	0.0649	3E-9		0.04323389	[0.029-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	3q23	RASA2	rs9819371-T	0.065	2E-10		0.04652502	[0.032-0.061] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141206799	141206800	rs9819371	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	3q23	RASA2	rs9819371-T	0.065	1E-9		0.0442047	[0.03-0.058] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141207574	141207575	rs11917587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q23	RASA2	rs11917587-A	NR	3E-8		0.015872	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
1662	chr3	141207574	141207575	rs11917587	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RASA2	rs11917587-A	NR	1E-22		0.0278216	[0.022-0.033] unit increase	Affymetrix [321016] (imputed)	N
1662	chr3	141209593	141209594	rs79147413	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	3q23		rs79147413-?	NR	2E-9		0.36	[0.24-0.48] unit increase	Affymetrix [5682219] (imputed)	N
1662	chr3	141210699	141210700	rs75276363	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q23	NR	rs75276363-T	0.01394	2E-8	(ATOX1)	0.02205	NR unit increase	Illumina [1671387] (imputed)	N
1662	chr3	141215272	141215273	rs9838230	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs9838230-T	0.28038	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1662	chr3	141216545	141216546	rs36013391	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q23	RASA2	rs36013391-G	0.3368	5E-30		0.04265726	[0.035-0.05] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141217953	141217954	rs6808837	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q23		rs6808837-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1662	chr3	141218056	141218057	rs10513140	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RASA2	rs10513140-C	NR	3E-13		0.0224833	[0.016-0.029] unit decrease	Affymetrix [321016] (imputed)	N
1662	chr3	141231931	141231932	rs7651511	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q23	RASA2	rs7651511-A	0.3333	4E-26		0.03967596	[0.032-0.047] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141248514	141248515	rs79308158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q23	RASA2	rs79308158-G	0.071028	7E-19		0.038929764	[0.03-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141248514	141248515	rs79308158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	RASA2	rs79308158-G	0.071027	5E-20		0.04064968	[0.032-0.049] unit increase	Affymetrix [93095623] (imputed)	N
1662	chr3	141248514	141248515	rs79308158	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	RASA2	rs79308158-G	0.071095	2E-17		0.037872314	[0.029-0.047] unit increase	Affymetrix [93095623] (imputed)	N
1662	chr3	141248514	141248515	rs79308158	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q23	RASA2	rs79308158-G	0.0713	2E-16		0.05641227	[0.043-0.07] unit increase	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141248514	141248515	rs79308158	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q23	RASA2	rs79308158-G	0.0712	2E-15		0.05473161	[0.041-0.068] unit increase	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141249397	141249398	rs6800122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs6800122-T	0.397405	8E-30				Affymetrix, Illumina [23467995] (imputed)	N
1662	chr3	141249397	141249398	rs6800122	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q23	NR	rs6800122-T	0.399684	5E-30		0.021775	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1662	chr3	141253434	141253435	rs34888832	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q23	RASA2	rs34888832-G	0.341645	3E-11		0.01562048	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1662	chr3	141263863	141263864	rs116071488	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q23	NR	rs116071488-C	0.01394	2E-8	(ATOX1)	0.02205	NR unit increase	Illumina [1671387] (imputed)	N
1662	chr3	141266492	141266493	rs6776003	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q23	NR	rs6776003-A	0.4178	3E-10	(EA)	0.0394	[0.027-0.052] unit increase	Illumina [~ 11800000] (imputed)	N
1662	chr3	141266492	141266493	rs6776003	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3q23	RASA2	rs6776003-A	0.44	4E-11	(EA, MCV)	0.138	[0.087-0.189] unit decrease	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
1662	chr3	141267293	141267294	rs59714050	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q23	RASA2	rs59714050-T	0.933673	5E-16		0.0228386	[0.017-0.028] unit decrease	Affymetrix [12370749]	N
1662	chr3	141267294	141267295	rs60654199	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3q23	NR	rs60654199-A	0.067	5E-9		0.020264836	[0.013-0.027] unit decrease	Affymetrix [NR] (imputed)	N
1662	chr3	141267294	141267295	rs60654199	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3q23	NR	rs60654199-A	0.0629	3E-8		0.016660294	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1662	chr3	141272266	141272269	rs536323602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	3q23		rs536323602-A	0.665495	1E-8		0.0250069	[0.016-0.034] unit increase	NR [11722792] (imputed)	N
1662	chr3	141272266	141272269	rs536323602	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	3q23		rs536323602-A	0.665495	8E-9		0.0254505	[0.017-0.034] unit increase	NR [11722792] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q23	NA	rs16851483-T	0.0717	5E-25		0.0352	[0.029-0.042] unit increase	NR [~ 27400000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q23	NA	rs16851483-T	0.0717	5E-25		0.0352	[0.029-0.042] unit increase	NR [~ 27400000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q23	NR	rs16851483-G	NR	5E-8		0.03	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3q23	RASA2	rs16851483-T	0.06	8E-11		0.023	[0.017-0.029] unit increase	Illumina [6108953] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	3E-7	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	2E-11				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	1E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	5E-8	(women)	0.0572	[0.037-0.078] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	2E-11		0.0542	[0.038-0.07] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	9E-8	(men)	0.0554	[0.035-0.076] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	3E-12		0.0502	[0.036-0.064] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q23	RASA2	rs16851483-T	0.0732	2E-6	(women)	0.0456	[0.027-0.064] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3q23	NR	rs16851483-T	0.0654319933659263	4E-15		0.048569173	unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1662	chr3	141275435	141275436	rs16851483	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q23	RASA2	rs16851483-T	0.066	4E-10	(EA)	0.048	[0.033-0.063] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1662	chr3	141275435	141275436	rs16851483	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q23	RASA2	rs16851483-T	0.066	2E-10		0.048	[0.033-0.063] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1662	chr3	141275435	141275436	rs16851483	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q23	RASA2	rs16851483-T	0.065	5E-8	(EA, women)	0.052	[0.034-0.071] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1662	chr3	141280272	141280273	rs3821709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q23	NR	rs3821709-?	NR	3E-18				Affymetrix [~ 8270000] (imputed)	N
1662	chr3	141280272	141280273	rs3821709	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q23		rs3821709-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1662	chr3	141290583	141290584	rs78074823	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs78074823-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1662	chr3	141292617	141292618	rs1493209	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q23	RASA2	rs1493209-A	0.3997	3E-18		0.03171889	[0.025-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141292617	141292618	rs1493209	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3q23	RASA2	rs1493209-A	0.3996	2E-10		0.02312489	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1662	chr3	141293281	141293282	rs34761840	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q23	RASA2	rs34761840-T	NR	7E-9		0.0379601	[0.025-0.051] unit increase	Affymetrix [321016] (imputed)	N
1662	chr3	141294870	141294871	rs13062809	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q23	RASA2	rs13062809-A	0.393073	7E-14		0.01714043	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141295049	141295050	rs11714208	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q23	RASA2	rs11714208-G	NR	2E-10		0.0204697	[0.014-0.027] unit increase	Affymetrix [321114] (imputed)	N
1662	chr3	141295049	141295050	rs11714208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	RASA2	rs11714208-G	0.359053	2E-31		0.02812525	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1662	chr3	141295049	141295050	rs11714208	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q23	RASA2	rs11714208-G	0.359112	1E-15		0.018743614	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr3	141295777	141295778	rs3732869	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs3732869-?	NR	8E-6	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141295777	141295778	rs3732869	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs3732869-?	NR	3E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141298123	141298124	rs2035936	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q23	RASA2	rs2035936-G	0.944091	2E-13		0.0221545	[0.016-0.028] unit decrease	Affymetrix [12370749]	N
1663	chr3	141299399	141299399	rs763415480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	RASA2	rs763415480-TACACAC	0.330387	3E-39		0.036605	[0.032-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr3	141299399	141299399	rs763415480	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	RASA2	rs763415480-TACACAC	0.330391	5E-35		0.029527746	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr3	141304570	141304571	rs6440013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q23	RASA2	rs6440013-G	0.401208	4E-28		0.024855448	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	RASA2	rs2035935-G	0.10129999999999995	6E-9		0.0435	[0.029-0.058] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	RASA2	rs2035935-G	0.08599999999999997	6E-6	(men)	0.0527	[0.03-0.076] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q23	RASA2	rs2035935-G	0.06540000000000001	5E-7	(EA)	0.0423	[0.026-0.059] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-?	NR	8E-9	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-?	NR	6E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-G	0.10129999999999995	8E-11		0.0429	[0.03-0.056] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-G	0.10129999999999995	6E-6	(women)	0.0375	[0.021-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-G	0.10129999999999995	1E-7	(men)	0.0527	[0.033-0.072] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-G	0.06540000000000001	7E-9	(EA)	0.0441	[0.029-0.059] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141306012	141306013	rs2035935	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q23	RASA2	rs2035935-G	0.06540000000000001	7E-6	(EA, women)	0.0435	[0.024-0.063] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1663	chr3	141314132	141314133	rs11916906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q23		rs11916906-T	NR	9E-22		0.0202	[0.016-0.024] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1663	chr3	141314132	141314133	rs11916906	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3q23		rs11916906-T	0.348842	4E-9		0.0197571	[0.013-0.026] unit increase	Illumina [13479178] (imputed)	N
1663	chr3	141314132	141314133	rs11916906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q23	RASA2	rs11916906-T	0.401301	6E-38		0.029183233	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1663	chr3	141321836	141321836	rs10663129	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q23	RASA2	rs10663129-ACT	0.33	1E-13		1.042	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
1663	chr3	141324504	141324505	rs116542483	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs116542483-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1663	chr3	141326601	141326602	rs295322	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3q23	RASA2	rs295322-C	0.07420000000000004	4E-14		0.0276	[0.02-0.035] unit increase	Illumina [246328]	N
1663	chr3	141331564	141331565	rs1709	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	RASA2	rs1709-C	NR	4E-10		0.0213475	[0.015-0.028] unit decrease	Affymetrix [323123] (imputed)	N
1663	chr3	141331564	141331565	rs1709	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q23	NR	rs1709-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1663	chr3	141333838	141333839	rs115380769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	RASA2	rs115380769-T	0.066537	6E-26		0.0604889	[0.052-0.069] unit increase	Affymetrix [93095623] (imputed)	N
1663	chr3	141333838	141333839	rs115380769	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	RASA2	rs115380769-T	0.066534	1E-27		0.050350245	[0.041-0.059] unit increase	Affymetrix [93095623] (imputed)	N
1663	chr3	141333838	141333839	rs115380769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs115380769-?	NR	5E-59				NR [~ 8900000] (imputed)	N
1663	chr3	141335104	141335105	rs79228062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q23		rs79228062-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1663	chr3	141335120	141335121	rs2640017	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q23	NA	rs2640017-A	0.9306	6E-24		0.0329	[0.026-0.039] unit decrease	NR [~ 27400000] (imputed)	N
1663	chr3	141336350	141336351	rs6440015	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q23		rs6440015-G	0.605	9E-29				Affymetrix [10369434] (imputed)	N
1663	chr3	141338640	141338641	rs295301	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q23	RASA2	rs295301-A	NR	8E-12		0.0218792	[0.016-0.028] unit increase	Affymetrix [323123] (imputed)	N
1663	chr3	141338640	141338641	rs295301	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q23	NR	rs295301-A	NR	3E-14		0.0189	[0.014-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1663	chr3	141338640	141338641	rs295301	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q23	RASA2	rs295301-A	0.3452	2E-6		0.0324	[0.019-0.046] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1663	chr3	141338640	141338641	rs295301	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q23	RASA2	rs295301-A	0.3444	9E-7		0.0359	[0.022-0.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1663	chr3	141355521	141355522	rs62282029	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q23		rs62282029-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1663	chr3	141362224	141362225	rs295315	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	3q23	intergenic	rs295315-?	NR	8E-7		1.82		Illumina [636555]	N
1663	chr3	141362754	141362755	rs6774127	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q23	NR	rs6774127-?	NR	3E-9				Affymetrix [NR]	N
1663	chr3	141376139	141376140	rs11921014	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	3q23	LOC646730	rs11921014-A	0.02	8E-6	(AA)	1.07	[0.6-1.54] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
1663	chr3	141377329	141377330	rs868767	28935272	Moore KN	2017-09-18	Gynecol Oncol	Genome-wide association study evaluating single-nucleotide polymorphisms and outcomes in patients with advanced stage serous ovarian or primary peritoneal cancer: An NRG Oncology/Gynecologic Oncology Group study.	Overall survival in serous epithelial ovarian cancer treated with paclitaxel and cisplatin	289 European ancestry women	NA	3q23	LOC646730	rs868767-?	NR	2E-6		2.12		Illumina [636555]	N
1663	chr3	141400652	141400653	rs73226617	31434886	Luo Y	2019-08-21	Nat Commun	Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians.	Early progression to active pulmonary tuberculosis in Mycobacterium tuberculosis-infected individuals	2,160 Peruvian cases, 1,820 Peruvian controls	NA	3q23		rs73226617-A	0.032	4E-8		0.165	[0.11-0.22] unit increase	Affymetrix [7756401] (imputed)	N
1663	chr3	141407055	141407056	rs6798834	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Inferior colliculus)	228 European ancestry cases, 587 European ancestry controls	NA	3q23		rs6798834-?	NR	6E-6		0.221	[0.13-0.32] unit decrease	Illumina [5082878] (imputed)	N
1663	chr3	141416300	141416301	rs73226624	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	3q23	NR	rs73226624-?	NR	4E-6		0.1971	[0.11-0.28] unit decrease	Illumina [at least 560000] (imputed)	N
1664	chr3	141434402	141434403	rs7623488	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse (moderate/severe)	154 African American cases, 948 African American controls, 163 Hispanic cases, 305 Hispanic controls	NA	3q23	RNF7, TPT1P3	rs7623488-T	0.5	7E-6		1.5873016		Affymetrix [at least 730985] (imputed)	N
1664	chr3	141463297	141463298	rs16851720	22841784	Patin E	2012-07-26	Gastroenterology	Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.	Hepatitis C induced liver fibrosis	1,161 European ancestry HCV-infected individuals	1,181 European ancestry HCV-infected individuals	3q23	RNF7	rs16851720-C	0.19	9E-9	(QTF)			Illumina [780650] (imputed)	N
1665	chr3	141558920	141558921	rs538162817	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Anti-herpes simplex virus 2 IgG seropositivity	8,735 White British ancestry individuals	NA	3q23	GRK7	rs538162817-T	0.988	3E-8		0.14	[0.091-0.189] unit decrease	NR [25472218] (imputed)	N
1665	chr3	141568188	141568189	rs3902989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs3902989-T	NR	3E-9		0.036	[0.024-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1665	chr3	141568188	141568189	rs3902989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs3902989-T	NR	1E-9		0.0372	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
1665	chr3	141573760	141573761	rs9832234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs9832234-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1665	chr3	141576862	141576863	rs4683632	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q23	ATP1B3	rs4683632-A	0.6433	4E-8	(146 ms)	0.0303161	[0.019-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1665	chr3	141579310	141579311	rs7652774	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q23	HMGN2P25	rs7652774-C	NR	1E-8		0.0171402	[0.011-0.023] unit increase	Affymetrix [321788] (imputed)	N
1665	chr3	141591568	141591569	rs115073948	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q23	SDCCAG8, AKT3	rs115073948-?		5E-8				NR [7428630] (imputed)	N
1665	chr3	141592657	141592658	rs4441632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q23	ATP1B3	rs4441632-C	0.51205	8E-10		0.0135647785	[0.0092-0.0179] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr3	141592796	141592797	rs558542247	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	3q23	ATP1B3	rs558542247-T	0.9986	6E-6		0.7294	[0.41-1.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1665	chr3	141611525	141611526	rs79390223	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q23		rs79390223-T	0.12	1E-17		8.57	z score increase	Affymetrix [9061022] (imputed)	N
1665	chr3	141618832	141618833	rs7616903	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q23	ATP1B3, TFDP2	rs7616903-?		1E-10				NR [7428630] (imputed)	N
1665	chr3	141623303	141623304	rs2068229	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q23		rs2068229-?	NR	1E-22				NR [~ 8900000] (imputed)	N
1665	chr3	141623303	141623304	rs2068229	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q23	ATP1B3	rs2068229-G	NR	1E-11		0.0314273	[0.023-0.04] unit increase	Affymetrix [16832071] (imputed)	N
1665	chr3	141623303	141623304	rs2068229	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q23	ATP1B3	rs2068229-G	0.27	1E-11		0.02699656	[0.019-0.035] unit increase	Affymetrix [~ 2500000] (imputed)	N
1665	chr3	141626122	141626123	rs3792411	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q23		rs3792411-G	NR	3E-8		0.0661	[0.043-0.089] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1665	chr3	141626815	141626816	rs34496773	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q23	ATP1B3	rs34496773-C	0.152686	8E-22		0.029698163	[0.024-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1665	chr3	141627859	141627860	rs6782694	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs6782694-?	NR	5E-20				NR [~ 8900000] (imputed)	N
1665	chr3	141627859	141627860	rs6782694	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q23	ATP1B3	rs6782694-C		2E-6	(EA)	0.249	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1665	chr3	141627859	141627860	rs6782694	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q23	ATP1B3	rs6782694-C		2E-6		0.228	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1665	chr3	141627859	141627860	rs6782694	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q23	ATP1B3	rs6782694-C		2E-8		0.19	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1665	chr3	141632821	141632822	rs2288634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q23		rs2288634-?	NR	9E-22				NR [~ 8900000] (imputed)	N
1665	chr3	141634055	141634056	rs3804772	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3q23	ATP1B3	rs3804772-A	0.1253	4E-19		1.105	NR	Affymetrix [9154080] (imputed)	N
1665	chr3	141650609	141650610	rs9289639	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q23		rs9289639-A	0.722133	2E-9		0.014799705	[0.01-0.0196] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr3	141654684	141654685	rs9861009	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q23		rs9861009-T	0.27	3E-11		6.63	z score increase	Affymetrix [9061022] (imputed)	N
1665	chr3	141654684	141654685	rs9861009	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q23	NR	rs9861009-T	0.2744	5E-13				NR [9056863] (imputed)	N
1665	chr3	141654684	141654685	rs9861009	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	3q23		rs9861009-T	0.272485	4E-11		0.015	[0.011-0.019] unit decrease	NR [7250403] (imputed)	N
1665	chr3	141655541	141655542	rs75497126	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q23		rs75497126-A	0.993	3E-14		0.52	[0.39-0.66] % increase	Affymetrix [NR] (imputed)	N
1665	chr3	141659511	141659512	rs6440053	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q23	TFDP2, RP11-271K21.11	rs6440053-T	0.159216	5E-13		0.021900807	[0.016-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1665	chr3	141660674	141660675	rs10804681	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q23	Intergenic	rs10804681-A	0.1587	9E-9	(MTAG)	0.018	[0.012-0.024] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1665	chr3	141660674	141660675	rs10804681	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	3q23	NR	rs10804681-A	NR	3E-8		5.545	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
1665	chr3	141663751	141663752	rs9942	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q23		rs9942-A	0.17	3E-17		8.46	z score increase	Affymetrix [9061022] (imputed)	N
1665	chr3	141663751	141663752	rs9942	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q23	NR	rs9942-?	NR	2E-6		4.775	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1665	chr3	141682824	141682825	rs3792409	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q23	NR	rs3792409-C	0.74	1E-23		0.0209	[0.017-0.025] unit increase	NR [NR]	N
1666	chr3	141691406	141691407	rs3804771	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q23		rs3804771-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1666	chr3	141712707	141712708	rs2271386	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	3q23		rs2271386-G	0.850647	8E-12		0.0339554	[0.024-0.044] unit increase	NR [11722792] (imputed)	N
1666	chr3	141716071	141716072	rs1511299	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q23		rs1511299-C	NR	4E-26		0.0211	[0.017-0.025] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1666	chr3	141716071	141716072	rs1511299	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q23	TFDP2	rs1511299-?	NR	3E-17				Affymetrix, Illumina [at least 5248638] (imputed)	N
1666	chr3	141716071	141716072	rs1511299	27588450	Mahajan A	2016-09-01	Am J Hum Genet	Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.	Glomerular filtration rate	23,553 European ancestry individuals, 23,536 Japanese individuals, 16,325 Hispanic individuals, 8,224 African American individuals	NA	3q23	TFDP2	rs1511299-T	NR	4E-8		0.727	[0.47-0.98] unit decrease	Affymetrix, Illumina [at least 6581000] (imputed)	N
1666	chr3	141717735	141717736	rs9877536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q23		rs9877536-G	NR	1E-49		0.0258	[0.022-0.029] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1666	chr3	141720711	141720712	rs34186890	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3q23		rs34186890-?	NR	1E-11		0.0156853	[0.011-0.02] unit decrease	NR [6912294] (imputed)	N
1666	chr3	141720711	141720712	rs34186890	32198502	Shin J	2020-03-20	Cereb Cortex	Global and Regional Development of the Human Cerebral Cortex: Molecular Architecture and Occupational Aptitudes.	Cortical surface area (global PC1)	23,784 European ancestry individuals	19,512 European ancestry individuals, 6,234 individuals	3q23	TFDP2	rs34186890-?	NR	4E-8	(EA)	0.8576	[0.55-1.16] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1666	chr3	141721761	141721762	rs34464850	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q23	NR	rs34464850-C	0.1536	2E-18	(total)	956.83966	[742.14-1171.54] unit increase	Affymetrix, Illumina [NR]	N
1666	chr3	141722753	141722754	rs11569190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	TFDP2	rs11569190-C	0.117437	9E-23		0.0236902	[0.017-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
1666	chr3	141722753	141722754	rs11569190	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	TFDP2	rs11569190-C	0.117442	8E-20		0.03147551	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1666	chr3	141724643	141724644	rs2861422	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	3q23	TFDP2	rs2861422-T	0.27	9E-14	(EA)	0.0074	[0.0054-0.0094] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1666	chr3	141741822	141741823	rs12496412	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q23	TFDP2	rs12496412-A	0.6675	5E-10		0.0205	[0.014-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1666	chr3	141741822	141741823	rs12496412	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q23	TFDP2	rs12496412-A	0.6648	8E-8		0.021807	[0.014-0.03] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1666	chr3	141741822	141741823	rs12496412	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3q23	NR	rs12496412-A	0.6835	3E-8	(men)	0.0292	[0.019-0.04] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1666	chr3	141741959	141741960	rs72990266	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q23	NR	rs72990266-G	0.2715	2E-11				NR [9056863] (imputed)	N
1666	chr3	141743950	141743951	rs7644383	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	TFDP2	rs7644383-T	0.731067	2E-25		0.026543926	[0.022-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1666	chr3	141749929	141749930	rs78768527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	TFDP2	rs78768527-C	0.108907	9E-20		0.03293612	[0.026-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1666	chr3	141750809	141750810	rs1397764	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q23	TFDP2	rs1397764-A	0.274	1E-44		0.0043	[0.0037-0.0049] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1666	chr3	141750809	141750810	rs1397764	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q23	TFDP2	rs1397764-A	0.2756	2E-40		0.0047	[0.0039-0.0055] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1666	chr3	141757265	141757266	rs138712760	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs138712760-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1666	chr3	141759379	141759380	rs7630893	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3q23	ROR1	rs7630893-?		4E-8				NR [7428630] (imputed)	N
1666	chr3	141759379	141759380	rs7630893	30279459	van der Meer D	2018-10-02	Mol Psychiatry	Brain scans from 21,297 individuals reveal the genetic architecture of hippocampal subfield volumes.	Total hippocampal volume	21,297 European ancestry individuals	NA	3q23	ATP1B3, TFDP2	rs7630893-C	NR	3E-9		36.18	NR mm3 increase	Affymetrix, Illumina [NR] (imputed)	N
1666	chr3	141764454	141764456	rs149064151	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q23	TFDP2	rs149064151-CTT	0.205	2E-20		0.0041	[0.0033-0.0049] unit increase	Affymetrix [NR] (imputed)	N
1666	chr3	141764471	141764473	rs10587862	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q23	TFDP2	rs10587862-CTT	0.1932	4E-26	(EA)	0.0046	[0.0038-0.0054] unit increase	Affymetrix [NR] (imputed)	N
1666	chr3	141766304	141766305	rs6791514	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q23	TFDP2	rs6791514-G	0.6906	1E-20		9.335	NR z score decrease	Illumina [26237160] (imputed)	N
1666	chr3	141796238	141796239	rs2203002	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	3q23	NR	rs2203002-?	NR	7E-8		1.1918951	[1.12-1.27]	Illumina [7437091] (imputed)	N
1666	chr3	141805112	141805113	rs115604285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q23	NR	rs115604285-T	NR	1E-9		0.0453	[0.031-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1666	chr3	141805112	141805113	rs115604285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs115604285-T	NR	6E-15		0.0579	[0.043-0.072] unit decrease	Affymetrix [9000000] (imputed)	N
1666	chr3	141805112	141805113	rs115604285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs115604285-T	NR	1E-15		0.0594	[0.045-0.074] unit increase	Affymetrix [9000000] (imputed)	N
1666	chr3	141807136	141807137	rs347685	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	3q23	TFDP2	rs347685-A	NR	2E-14		0.0077	[0.0053-0.0101] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1666	chr3	141807136	141807137	rs347685	20383146	Kottgen A	2010-04-11	Nat Genet	New loci associated with kidney function and chronic kidney disease.	Chronic kidney disease	Up to 67,093 European ancestry individuals	Up to 22,982 European ancestry individuals	3q23	TFDP2	rs347685-C	0.28	3E-11	(eGFRcrea)	1.09	[0.007-0.011] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1666	chr3	141813171	141813172	rs7640665	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		3q23	TFDP2	rs7640665-A	NR	5E-11		0.0072	[0.0052-0.0092] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
1666	chr3	141813348	141813349	rs147877018	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q23	TFDP2	rs147877018-A	0.057	1E-8		0.816	[0.4-1.24] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
1666	chr3	141818849	141818850	rs11705932	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	3q23	TFDP2	rs11705932-C	0.8	5E-7		1.17	[1.11-1.23]	Illumina [at least 371504] (imputed)	N
1666	chr3	141818849	141818850	rs11705932	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	1,064 European ancestry cases, 4,009 cases, 10,082 European ancestry controls, 4,066 controls	3q23	ATP1B3, TFDP2	rs11705932-C	0.8	2E-9		1.18	[1.09-1.28]	Illumina [307291]	N
1667	chr3	141824923	141824924	rs79309321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs79309321-G	NR	3E-9		0.0387	[0.026-0.051] unit increase	Affymetrix [9000000] (imputed)	N
1667	chr3	141824923	141824924	rs79309321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs79309321-G	NR	1E-9		0.0398	[0.027-0.053] unit decrease	Affymetrix [9000000] (imputed)	N
1667	chr3	141825597	141825598	rs6773343	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	3q23	NR	rs6773343-T	0.720232	5E-9		0.01268	[0.0084-0.0169] unit increase	Affymetrix [16668957] (imputed)	N
1667	chr3	141832980	141832981	rs62284572	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q23	TFDP2	rs62284572-T	0.1974	1E-12		0.03162035	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1667	chr3	141832980	141832981	rs62284572	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q23	TFDP2	rs62284572-T	0.1974	6E-9		0.02596429	[0.017-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1667	chr3	141834968	141834969	rs114503684	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital left-sided heart lesions	326 European ancestry cases, 8,486 European ancestry controls	NA		TFDP2	rs114503684-?		5E-8		3.53	[2.25-5.58]	Affymetrix, Illumina [9216527] (imputed)	N
1667	chr3	141853975	141853976	rs79513925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs79513925-A	NR	1E-15		0.0291	[0.022-0.036] unit increase	Affymetrix [9000000] (imputed)	N
1667	chr3	141853975	141853976	rs79513925	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs79513925-A	NR	9E-16		0.0292	[0.022-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1667	chr3	141860612	141860613	rs142800815	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3q23	TFDP2	rs142800815-T	0.004	3E-6		0.398	[0.23-0.56] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1667	chr3	141875601	141875604	rs577660579	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	3q23	TFDP2-GK5	rs577660579-CTTT	0.461	9E-9		0.354	[0.23-0.48] unit increase	Affymetrix [NR] (imputed)	N
1667	chr3	141888147	141888148	rs62282070	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q23	NR	rs62282070-T	0.907874	8E-11		0.0228262	[0.016-0.03] unit increase	NR [NR]	N
1667	chr3	141890088	141890088	rs145503517	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q23		rs145503517-TA	NR	3E-9		0.0246	[0.017-0.033] unit decrease	Affymetrix, Illumina [20529698] (imputed)	N
1667	chr3	141906966	141906967	rs114203670	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	3q23	NR	rs114203670-G	NR	8E-6		1.9023	NR	Illumina [at least 560000] (imputed)	N
1667	chr3	141920433	141920434	rs9814627	32580138	Shi XY	2020-06-21	EBioMedicine	Identification of susceptibility variants to benign childhood epilepsy with centro-temporal spikes (BECTS) in Chinese Han population.	Benign childhood epilepsy with centro-temporal spikes	1,738 Han Chinese ancestry cases, 6,592 Han Chinese ancestry controls	NA	3q23	GK5, TFDP2, XRN1	rs9814627-?		5E-6		1.2048193	[1.11-1.32]	Illumina [5352724] (imputed)	N
1667	chr3	141922117	141922118	rs567516666	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q23	GK5	rs567516666-CA	0.9987	8E-6		0.9182	[0.52-1.32] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1668	chr3	141972023	141972024	rs116036161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs116036161-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1668	chr3	142002868	142002869	rs6777420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q23	NR	rs6777420-T	0.13125299999999995	9E-9		0.00668917	[0.0043-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
1668	chr3	142002868	142002869	rs6777420	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q23	NR	rs6777420-T	0.13125299999999995	6E-7		0.00662387	[0.0039-0.0093] unit increase	Affymetrix [16582965] (imputed)	N
1668	chr3	142002868	142002869	rs6777420	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q23	NR	rs6777420-T	0.131	2E-9		0.00981201	[0.0066-0.013] unit increase	NR [9732723] (imputed)	N
1668	chr3	142002868	142002869	rs6777420	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q23	NR	rs6777420-T	0.131	3E-8		0.0110558	[0.0071-0.015] unit increase	NR [~ 9732723] (imputed)	N
1668	chr3	142004003	142004004	rs73238130	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q23		rs73238130-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1668	chr3	142015066	142015067	rs6440076	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q23	NR	rs6440076-A	0.131696	5E-12		0.020826	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1668	chr3	142015589	142015590	rs1552340	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	3q23	XRN1	rs1552340-A	0.42	1E-5		0.1	[0.061-0.139] unit increase	Illumina [14638245] (imputed)	N
1668	chr3	142025432	142025433	rs146380793	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs146380793-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1668	chr3	142059759	142059760	rs764360312	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	3q23	XRN1	rs764360312-T	0.0012	2E-6		0.8661	[0.51-1.22] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1668	chr3	142080735	142080735	rs556352260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	XRN1	rs556352260-GT	0.411108	3E-12		0.021777363	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1669	chr3	142092189	142092190	rs115454798	33287642	Said MA	2020-12-08	J Am Heart Assoc	Associations of Observational and Genetically Determined Caffeine Intake With Coronary Artery Disease and Diabetes Mellitus.	Caffeine consumption from coffee or tea	362,316 European ancestry individuals	NA	3q23	XRN1, MLXIPL	rs115454798-A	0.871965	1E-10		0.02252	[0.016-0.029] unit decrease	Affymetrix [19400838] (imputed)	N
1669	chr3	142099366	142099367	rs73238169	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q23	XRN1	rs73238169-G	0.86564	2E-12		0.0192047	[0.014-0.025] unit increase	NR [13737936] (imputed)	N
1669	chr3	142100427	142100428	rs7623513	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q23	NR	rs7623513-C	0.12934299999999999	7E-9		0.00966509	[0.0063-0.0131] unit increase	Affymetrix [16582621] (imputed)	N
1669	chr3	142100427	142100428	rs7623513	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q23	NR	rs7623513-C	0.12934299999999999	4E-7		0.00937051	[0.0058-0.013] unit increase	Affymetrix [16582614] (imputed)	N
1669	chr3	142104426	142104427	rs11709758	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q23		rs11709758-?	NR	8E-13				NR [~ 8900000] (imputed)	N
1669	chr3	142111434	142111435	rs7631518	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs7631518-T	0.129931	7E-12				Affymetrix, Illumina [19872809] (imputed)	N
1669	chr3	142123840	142123841	rs2306700	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	3q23	NR	rs2306700-T	0.13	2E-8		0.027	[0.017-0.037] z score increase	Affymetrix [up to 10400000] (imputed)	N
1669	chr3	142123840	142123841	rs2306700	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q23	XRN1	rs2306700-T	0.135735	2E-9		0.022762	[0.015-0.03] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1669	chr3	142143108	142143109	rs140269075	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3q23	XRN1	rs140269075-G	NR	1E-6		0.0759293	[0.045-0.107] unit decrease	Illumina [13520550] (imputed)	N
1669	chr3	142157534	142157535	rs112828099	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs112828099-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1669	chr3	142175320	142175321	rs113288103	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q23	KIF26B	rs113288103-?		9E-10				NR [7428630] (imputed)	N
1669	chr3	142179496	142179497	rs6780250	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	3q23	ATR	rs6780250-?	NR	5E-9		0.02525	[0.017-0.034] unit increase novel	Illumina [6108953] (imputed)	N
1669	chr3	142181542	142181543	rs111381449	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q23	ATR	rs111381449-G	0.158965	6E-10		0.018685862	[0.013-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q23	ATR	rs28910273-C	0.00782099999999997	6E-13		0.09104204	[0.066-0.116] unit increase	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	ATR	rs28910273-C	0.00784700000000005	1E-17		0.10934841	[0.084-0.134] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	ATR	rs28910273-C	0.007853	8E-19		0.11323237	[0.088-0.138] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	ATR	rs28910273-C	0.00782000000000005	9E-26		0.164667	[0.14-0.19] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	ATR	rs28910273-C	0.00782400000000005	3E-19		0.11221108	[0.088-0.137] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142188336	142188337	rs28910273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs28910273-?	NR	2E-26				NR [~ 8900000] (imputed)	N
1669	chr3	142191658	142191659	rs13075471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	ATR	rs13075471-C	0.57167	8E-11		0.0652977	[0.061-0.069] unit decrease	Affymetrix [93095623] (imputed)	N
1669	chr3	142191658	142191659	rs13075471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	ATR	rs13075471-C	0.571652	2E-10		0.041951388	[0.029-0.055] unit increase	Affymetrix [93095623] (imputed)	N
1669	chr3	142210800	142210801	rs7630115	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q23	NR	rs7630115-G	0.565545	1E-40		0.025352	[0.022-0.029] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1669	chr3	142210800	142210801	rs7630115	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q23		rs7630115-?	NR	1E-40				NR [~ 8900000] (imputed)	N
1670	chr3	142227901	142227902	rs7634158	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q23		rs7634158-C	0.427615	4E-56		0.0571396	[0.05-0.064] unit decrease	Illumina [13476266] (imputed)	N
1670	chr3	142228485	142228486	rs13098343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3q23		rs13098343-C	0.428667	4E-13		0.0228691	[0.017-0.029] unit increase	Illumina [13479135] (imputed)	N
1670	chr3	142248497	142248498	rs9683085	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3q23	ATR	rs9683085-?	NR	2E-44		0.05979	[0.051-0.068] unit decrease novel	Illumina [6108953] (imputed)	N
1670	chr3	142260561	142260562	rs7636909	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q23	ATR	rs7636909-G	0.434467	6E-45		0.031594496	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142260561	142260562	rs7636909	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q23	ATR	rs7636909-G	NR	3E-8		0.0218884	[0.014-0.03] unit increase	Affymetrix [16832071] (imputed)	N
1670	chr3	142270358	142270359	rs6440088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q23	ATR	rs6440088-C	0.58691	7E-53		0.034272596	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142270358	142270359	rs6440088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q23	ATR	rs6440088-C	0.586988	3E-204		0.09355535	[0.088-0.1] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr3	142270358	142270359	rs6440088	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q23	ATR	rs6440088-C	0.586866	6E-69		0.0747541	[0.071-0.079] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr3	142270358	142270359	rs6440088	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q23	NR	rs6440088-C	0.586662	7E-77		0.034741	[0.031-0.038] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1670	chr3	142271796	142271797	rs10935465	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs10935465-C	0.560283	7E-260				Affymetrix, Illumina [20825802] (imputed)	N
1670	chr3	142275962	142275962	rs71153975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	ATR	rs71153975-AT	0.586609	6E-206		0.07084443	[0.066-0.075] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr3	142275962	142275962	rs71153975	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q23	ATR	rs71153975-AT	0.586592	2E-56		0.10494696	[0.092-0.118] unit decrease	Affymetrix [93095623] (imputed)	N
1670	chr3	142275963	142275963	rs397991267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q23		rs397991267-AT	NR	3E-48		0.0253	[0.022-0.029] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1670	chr3	142275963	142275963	rs397991267	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q23		rs397991267-AT	NR	8E-176		0.0567	[0.053-0.061] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs2227930-T	0.556628	2E-81				Affymetrix, Illumina [24332387] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q23	NR	rs2227930-T	0.586574	7E-322		0.070431	[0.067-0.074] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q23	NR	rs2227930-T	0.586458	4E-225		0.06238	[0.059-0.066] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q23	ATR	rs2227930-?	NR	1E-35		0.05332	[0.045-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3q23	ATR	rs2227930-T	0.5871	3E-9		0.02152074	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1670	chr3	142277574	142277575	rs2227930	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte count	170,641 European ancestry individuals	NA	3q23	ATR	rs2227930-T	0.5871	7E-16		0.02942073	[0.022-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1670	chr3	142281611	142281612	rs2227928	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q23		rs2227928-G	0.431116	1E-47		0.052776	[0.046-0.06] unit decrease	Illumina [13476299] (imputed)	N
1670	chr3	142283812	142283813	rs1129393	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q23	ATR	rs1129393-G	0.587828	5E-18		0.01956033	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142295367	142295368	rs6782400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q23		rs6782400-?	NR	3E-58				NR [~ 8900000] (imputed)	N
1670	chr3	142295367	142295368	rs6782400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q23		rs6782400-?	NR	3E-209				NR [~ 8900000] (imputed)	N
1670	chr3	142299854	142299855	rs9858204	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q23		rs9858204-T	NR	1E-9		0.0137	[0.0094-0.018] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1670	chr3	142299925	142299926	rs9820353	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q23	RPL6P9	rs9820353-G	0.5845	1E-72		0.06450801	[0.057-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr3	142301438	142301439	rs6792259	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs6792259-T	0.561401	4E-367				Affymetrix, Illumina [24246363] (imputed)	N
1670	chr3	142304542	142304543	rs9825207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q23		rs9825207-C	NR	4E-222		0.0638	[0.06-0.068] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
1670	chr3	142304542	142304543	rs9825207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3q23	NR	rs9825207-T	0.567413	3E-50		0.061898	[0.054-0.07] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
1670	chr3	142304542	142304543	rs9825207	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3q23	NR	rs9825207-T	0.567408	7E-42		0.056597	[0.048-0.065] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1670	chr3	142312370	142312371	rs7610557	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs7610557-A	0.410527	1E-38				Affymetrix, Illumina [22063850] (imputed)	N
1670	chr3	142313514	142313515	rs6440091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q23	PLS1, RNA5SP143	rs6440091-T	0.585991	9E-21		0.021217275	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142313514	142313515	rs6440091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q23	PLS1, RNA5SP143	rs6440091-T	0.586	2E-34		0.02778567	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142313514	142313515	rs6440091	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q23	PLS1, RNA5SP143	rs6440091-T	0.586064	2E-28		0.024989072	[0.021-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1670	chr3	142318023	142318024	rs13086864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	3q23	NR	rs13086864-A	0.810533	2E-10		0.033973	[0.023-0.044] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
1670	chr3	142320531	142320532	rs7428496	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q23		rs7428496-A	0.414	7E-164		0.3	[0.28-0.33] % increase	Affymetrix [NR] (imputed)	N
1670	chr3	142320531	142320532	rs7428496	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q23	PLS1	rs7428496-T	0.585	3E-60		0.05879796	[0.052-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1670	chr3	142328918	142328919	rs9826463	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	NR	rs9826463-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1670	chr3	142339814	142339815	rs7609842	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular volume	22,267 Amish, White ancestry individuals, 447 Asian ancestry individuals, 12,285 Black individuals, 13,831 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3q23		rs7609842-C	NR	1E-10		0.25	[0.17-0.33] unit decrease	Illumina [97506867]	N
1670	chr3	142339814	142339815	rs7609842	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3q23		rs7609842-C	NR	4E-11		0.1	[0.061-0.139] unit decrease	Illumina [94681438]	N
1671	chr3	142355925	142355926	rs7615316	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3q23	NR	rs7615316-?	NR	1E-8				NR [2500000] (imputed)	N
1671	chr3	142355925	142355926	rs7615316	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	3q23	NR	rs7615316-?	NR	1E-9				NR [2500000] (imputed)	N
1671	chr3	142430999	142431000	rs3773506	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q23	PLS1	rs3773506-C	0.06	9E-6	(Indian)	1.81	[1.39-2.35]	Illumina [~ 2000000] (imputed)	N
1671	chr3	142438430	142438431	rs111326206	31164008	Mullins N	2019-06-05	Am J Psychiatry	GWAS of Suicide Attempt in Psychiatric Disorders and Association With Major Depression Polygenic Risk Scores.	Suicide attempts in major depressive disorder	1,622 European ancestry attempters, 8,786 European ancestry nonattempters	NA	3q23	NR	rs111326206-C	0.030000000000000027	7E-7		1.6129031	[1.33-1.96]	NR [8482392] (imputed)	N
1671	chr3	142451758	142451759	rs4305459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs4305459-A	NR	2E-9		0.0234	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
1671	chr3	142451758	142451759	rs4305459	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q23	NR	rs4305459-A	NR	4E-10		0.0245	[0.017-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1671	chr3	142473581	142473582	rs142622968	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (patient-rated acute sticky saliva)	799 Dutch ancestry individuals	214 Dutch ancestry individuals	3q23		rs142622968-A	NR	5E-6		0.4388	[0.25-0.63] increase	Illumina [6334277] (imputed)	N
1672	chr3	142535265	142535266	rs116465281	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q23	NR	rs116465281-?	NR	4E-6				Affymetrix [5486770] (imputed)	N
1672	chr3	142603860	142603861	rs34516933	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q23	PCOLCE2	rs34516933-A	0.356	5E-66	(Procollagen C-endopeptidase enhancer 2, PCOLCE2.6081.52.3)	0.42	[0.38-0.46] unit increase	Affymetrix [10572788] (imputed)	N
1672	chr3	142605145	142605146	rs4683701	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q23	PCOLCE2	rs4683701-C	0.368	2E-38	(Endothelin-converting enzyme 1, ECE1.3611.70.4)	0.32	[0.28-0.36] unit increase	Affymetrix [10572788] (imputed)	N
1672	chr3	142605555	142605556	rs11716897	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCOLCE2	5,361 Icelandic ancestry individuals	NA	3q23		rs11716897-A	0.3717	4E-94		0.387569	[0.35-0.42] unit increase	Illumina [7506463] (imputed)	N
1672	chr3	142605555	142605556	rs11716897	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q23		rs11716897-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1673	chr3	142610670	142610671	rs56389497	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q23	PCOLCE2	rs56389497-T	0.848118	2E-10		0.0165318	[0.011-0.022] unit increase	NR [13737936] (imputed)	N
1673	chr3	142614976	142614977	rs147652399	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q23		rs147652399-?	NR	2E-9		0.0157975	[0.01-0.021] unit increase	Affymetrix [20259828] (imputed)	N
1673	chr3	142617137	142617138	rs4683702	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q23	PCOLCE2	rs4683702-T	0.6296875	3E-59	(PCOLCE2, 6081_52_3)	0.41307816	[0.36-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
1673	chr3	142617137	142617138	rs4683702	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q23	PCOLCE2	rs4683702-G	0.3673367	2E-19	(EA, Endothelin-converting enzyme 1)	0.3973	[0.31-0.48] unit increase	Affymetrix [509946]	N
1673	chr3	142617352	142617353	rs11708647	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q23	PCOLCE2, LOC100507389	rs11708647-G		4E-11		0.178	unit increase	Affymetrix [at least 2696785] (imputed)	N
1673	chr3	142622232	142622232	rs113546801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q23		rs113546801-CAT	NR	1E-11		0.0143	[0.01-0.018] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1673	chr3	142625777	142625778	rs1470121	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q23	intergenic	rs1470121-A	0.32	1E-10		0.0168	[0.012-0.022] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1673	chr3	142633868	142633869	rs2581624	25500335	Tintle NL	2014-12-02	Prostaglandins Leukot Essent Fatty Acids	A genome-wide association study of saturated, mono- and polyunsaturated red blood cell fatty acids in the Framingham Heart Offspring Study.	Red blood cell fatty acid levels	2,633 individuals	NA	3q23	PCOLCE2	rs2581624-C	0.19	1E-10	(AA)	0.125	[NR] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1673	chr3	142648843	142648844	rs11709868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	3q23		rs11709868-T	NR	3E-10		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20521447] (imputed)	N
1673	chr3	142648843	142648844	rs11709868	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q23	intergenic	rs11709868-?	NR	4E-14		0.0212	[0.016-0.026] unit decrease	Affymetrix [5701386] (imputed)	N
1673	chr3	142649109	142649110	rs9832727	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3q23	NR	rs9832727-C	0.660225	3E-20		0.0186298	[0.015-0.023] unit increase	Affymetrix [15000001]	N
1673	chr3	142649109	142649110	rs9832727	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q23	PAQR9	rs9832727-C	0.660366	2E-11		0.0141563	[0.01-0.018] unit increase	Affymetrix [NR] (imputed)	N
1673	chr3	142649109	142649110	rs9832727	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	3q23	PAQR9	rs9832727-C	0.660366	2E-11		0.0147771	[0.01-0.019] unit increase	Affymetrix [NR] (imputed)	N
1673	chr3	142649109	142649110	rs9832727	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	3q23	PAQR9	rs9832727-C	0.660379	9E-12		0.0149953	[0.011-0.019] unit increase	Affymetrix [NR] (imputed)	N
1673	chr3	142649109	142649110	rs9832727	22359512	Demirkan A	2012-02-16	PLoS Genet	Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.	Phospholipid levels (plasma)	4,034 European ancestry individuals	NA	3q23	PAQR9	rs9832727-?	NR	6E-29	(proportions)	0.0	[0.80-3.10] % increase	Illumina [NR] (imputed)	N
1673	chr3	142652058	142652059	rs9811066	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q23	NR	rs9811066-G	0.339	3E-13	(Procollagen C-endopeptidase enhancer 2, PCOLCE2.6081.52.3)	0.19	[0.13-0.25] unit increase	Affymetrix [10572788] (imputed)	N
1673	chr3	142652558	142652559	rs4683438	30289880	Qi G	2018-10-05	PLoS Genet	Heritability informed power optimization (HIPO) leads to enhanced detection of genetic associations across multiple traits.	Lipid traits (pleiotropy) (HIPO component 2)	188,577 European ancestry individuals	NA	3q23	LOC100507389	rs4683438-?	NR	3E-8				NR [1800000]	N
1673	chr3	142652558	142652559	rs4683438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q23		rs4683438-G	0.665	8E-6	(EA)	0.02	unit increase	Affymetrix [at least 7091467] (imputed)	N
1673	chr3	142652558	142652559	rs4683438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q23	NR	rs4683438-G	NR	1E-8		0.018	unit increase	Affymetrix [at least 7091467] (imputed)	N
1673	chr3	142652558	142652559	rs4683438	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q23	NR	rs4683438-G	NR	6E-6		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1673	chr3	142653511	142653512	rs2608073	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q23		rs2608073-T	NR	1E-10		0.0278	[0.019-0.036] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1673	chr3	142653511	142653512	rs2608073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q23	NR	rs2608073-T	NR	3E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
1673	chr3	142653511	142653512	rs2608073	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q23	RP11-372E1.4	rs2608073-T	0.083452	6E-10		0.026084958	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr3	142653511	142653512	rs2608073	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q23		rs2608073-?	NR	2E-19				NR [~ 8900000] (imputed)	N
1673	chr3	142653511	142653512	rs2608073	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q23	RP11-372E1.4	rs2608073-T	0.0849	1E-9		0.04035898	[0.027-0.053] unit increase	Affymetrix [~ 2500000] (imputed)	N
1673	chr3	142653679	142653680	rs6781362	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q23	NR	rs6781362-A	0.205	5E-30	(Procollagen C-endopeptidase enhancer 2, PCOLCE2.6081.52.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
1673	chr3	142655052	142655053	rs10212439	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Phosphatidylinositol levels	2,045 European ancestry individuals	NA	3q23	PAQR9	rs10212439-C	NR	3E-8	(PI(18:0;0-18:1;0))	0.1785	[0.12-0.24] unit increase	Illumina [~ 9300000] (imputed)	N
1673	chr3	142655289	142655290	rs12638256	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PCOLCE2	5,361 Icelandic ancestry individuals	NA	3q23		rs12638256-A	0.4854	4E-10		0.117678	[0.081-0.154] unit increase	Illumina [7506463] (imputed)	N
1673	chr3	142657204	142657205	rs2354167	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q23	RP11-372E1.4	rs2354167-T	0.4443	2E-9		0.0144	[0.0097-0.0191] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1673	chr3	142657760	142657761	rs6770560	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	3q23		rs6770560-A	NR	2E-10		0.0388	[0.027-0.051] unit decrease	Illumina [6720657] (imputed)	N
1673	chr3	142659360	142659361	rs6440123	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q23		rs6440123-G	NR	2E-10		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1673	chr3	142659360	142659361	rs6440123	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q23	LOC100507389	rs6440123-A	0.649108	2E-17		0.00340824	[0.0026-0.0042] unit increase	Affymetrix [13995440] (imputed)	N
1673	chr3	142659360	142659361	rs6440123	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q23	PCOLCE2, PAQR9	rs6440123-A	0.65	3E-11		6.65	z-score increase	Affymetrix [4312306] (imputed)	N
1673	chr3	142659360	142659361	rs6440123	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q23	LOC100507389	rs6440123-A	0.727852	2E-14	(1-stearoyl-2-oleoyl-GPI (18:0/18:1)*)	0.197	[0.15-0.25] unit decrease	Illumina [13039987] (imputed)	N
1673	chr3	142659360	142659361	rs6440123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q23	RP11-372E1.4	rs6440123-G	0.350539	5E-9		0.01393058	[0.0093-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr3	142659836	142659837	rs9821138	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	3q23		rs9821138-T	NR	8E-10		0.0485	[0.033-0.064] unit increase	Illumina [6720657] (imputed)	N
1673	chr3	142660366	142660367	rs6440125	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidylinositol_36:2_[M+H]1+ levels	13,814 British ancestry individuals	NA	3q23		rs6440125-G	NR	7E-12		0.0899529	[0.064-0.116] unit decrease	Affymetrix [87696910] (imputed)	N
1673	chr3	142660705	142660706	rs9653945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q23		rs9653945-A	NR	4E-10		0.0147	[0.01-0.019] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1673	chr3	142660705	142660706	rs9653945	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q23		rs9653945-A	NR	1E-14		0.0173	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1673	chr3	142662122	142662123	rs11367367	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q23	LOC100507389	rs11367367-CA	0.469697	3E-11	(1-oleoyl-GPE (18:1))	0.149	[0.11-0.19] unit decrease	Illumina [13039987] (imputed)	N
1673	chr3	142663206	142663207	rs7650847	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	3q23		rs7650847-T	NR	3E-10		0.057	[0.039-0.075] unit increase	Illumina [6720657] (imputed)	N
1673	chr3	142664818	142664819	rs4683715	34503513	Harshfield EL	2021-09-10	BMC Med	Genome-wide analysis of blood lipid metabolites in over 5000 South Asians reveals biological insights at cardiometabolic disease loci.	Phosphatidate(44:6)_[M+OAc]1-/Phosphatidylglycerol(43:6)_[M-H]1- levels	5,662 Pakistani ancestry individuals	NA	3q23		rs4683715-A	NR	1E-11		0.0667	[0.047-0.086] unit decrease	Illumina [6720657] (imputed)	N
1673	chr3	142669092	142669092	rs11391636	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q23	PAQR9	rs11391636-AT	0.484336	5E-15		0.017530428	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1673	chr3	142669092	142669092	rs11391636	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q23	PAQR9	rs11391636-?	NR	4E-8		0.0145	[0.0098-0.0192] unit decrease	Affymetrix [5701386] (imputed)	N
1673	chr3	142722910	142722911	rs11915462	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q23	NR	rs11915462-A	0.370542	1E-22				Affymetrix, Illumina [17210439] (imputed)	N
1674	chr3	142748717	142748718	rs4030582	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q23	NR	rs4030582-T	0.63	2E-8		0.0106	[0.0068-0.0144] unit decrease	NR [NR]	N
1674	chr3	142762486	142762487	rs6805417	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q23	U2SURP	rs6805417-T	0.3427	1E-8		0.0186	[0.012-0.025] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1674	chr3	142762486	142762487	rs6805417	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q23	U2SURP	rs6805417-T	0.3706	4E-7		0.02012	[0.012-0.028] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
1674	chr3	142762909	142762910	rs9877128	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q23		rs9877128-T	NR	4E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1674	chr3	142764235	142764236	rs6440132	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q23	U2SURP	rs6440132-T	0.624221	4E-22		0.022411238	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1674	chr3	142766724	142766724	rs139906758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q23	U2SURP	rs139906758-AC	0.619154	7E-17		0.019172514	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1674	chr3	142766724	142766724	rs139906758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q23	U2SURP	rs139906758-AC	0.618601	2E-13		0.016943099	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1674	chr3	142766724	142766724	rs139906758	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q23	U2SURP	rs139906758-AC	0.618609	4E-15		0.018054603	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1674	chr3	142766743	142766744	rs6440133	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q23		rs6440133-T	NR	2E-10		0.0152	[0.01-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1674	chr3	142766743	142766744	rs6440133	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alkaline phosphatase)	437,438 European ancestry individuals	315,572 European ancestry individuals	3q23	U2SURP	rs6440133-C	0.380015	3E-15		0.00185128	[0.0014-0.0023] unit increase	Affymetrix [13995440] (imputed)	N
1674	chr3	142766743	142766744	rs6440133	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum alkaline phosphatase levels	342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals	NA	3q23	NR	rs6440133-T	NR	4E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix [9000000] (imputed)	N
1674	chr3	142789056	142789057	rs34572839	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q23		rs34572839-A	0.557694	1E-9		0.014111105	[0.0096-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
1674	chr3	142792340	142792341	rs4683724	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q23	NR	rs4683724-A	0.371865	5E-25		0.020392	[0.017-0.024] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1674	chr3	142792340	142792341	rs4683724	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q23		rs4683724-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1674	chr3	142794494	142794494	rs11399095	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q23		rs11399095-TA	0.378595	1E-10		0.014907222	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1674	chr3	142794494	142794494	rs11399095	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q23	NR	rs11399095-I	0.378351	2E-10		0.013364	[0.0092-0.0175] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1674	chr3	142813108	142813109	rs6784200	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q23		rs6784200-G	0.630232	2E-12		0.016485542	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1674	chr3	142813108	142813109	rs6784200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q23		rs6784200-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1675	chr3	142870954	142870955	rs4361251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q24		rs4361251-C	NR	1E-10		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1675	chr3	142883715	142883716	rs370248141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q24	AC018450.1	rs370248141-C	0.170183	5E-11		0.021227919	[0.015-0.028] unit increase	Affymetrix [93095623] (imputed)	N
1675	chr3	142891006	142891007	rs11717285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q24	NR	rs11717285-T	0.283073	3E-10				Affymetrix, Illumina [23472807] (imputed)	N
1675	chr3	142891006	142891007	rs11717285	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q24	NR	rs11717285-T	0.262373	4E-11		0.014183	[0.01-0.0184] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1675	chr3	142894410	142894411	rs894177	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	3q24	intergenic	rs894177-G	0.34	3E-6	(ALT)	0.28	[NR] unit decrease	Illumina [324623]	N
1675	chr3	142901536	142901537	rs1372288	33710309	Shadrina AS	2021-03-12	Hum Mol Genet	Multivariate genome-wide analysis of immunoglobulin G N-glycosylation identifies new loci pleiotropic with immune function.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	3,147 European ancestry individuals		CHST2, SLC9A9	rs1372288-C	0.23	9E-11		0.01	[0.0061-0.0139] unit increase	NR [NR] (imputed)	N
1675	chr3	142901536	142901537	rs1372288	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA		SLC9A9	rs1372288-G	0.25	3E-8	(Tetrasialylated, men)	0.24889249	[0.16-0.34] (zscore) increase	Illumina [NR]	N
1675	chr3	142906884	142906885	rs294468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q24		rs294468-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1675	chr3	142955428	142955429	rs7627815	32747698	Matoba N	2020-08-03	Transl Psychiatry	Common genetic risk variants identified in the SPARK cohort support DDHD2 as a candidate risk gene for autism.	Autism spectrum disorder	4,535 European ancestry cases, 37 African ancestry cases, 83 East Asian ancestry cases, 1,567 cases, 4,535 European ancestry controls, 37 African ancestry controls, 83 East Asian ancestry controls, 1,567 controls	NA	3q24	NR	rs7627815-T	0.0343502	8E-6		1.38	[1.2-1.58]	Illumina [8992756] (imputed)	N
1675	chr3	142960272	142960273	rs4839604	21908519	Huffman JE	2011-12-15	Hum Mol Genet	Polymorphisms in B3GAT1, SLC9A9 and MGAT5 are associated with variation within the human plasma N-glycome of 3533 European adults.	N-glycan levels	Up to 1,426 European ancestry male individuals, up to 1,941 European ancestry female individuals	NA	3q24	SLC9A9	rs4839604-A	0.23	4E-13	(Tetrasialylated)	0.22375393	[0.16-0.28] (zscore) increase	Illumina [NR]	N
1675	chr3	142966717	142966718	rs17635531	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3q24	SLC9A9, PBX2P1, SLC9A9-AS1, CHST2	rs17635531-A	NR	7E-7	(sleep duration)	0.403	[0.24-0.56] unit decrease	Affymetrix [7141204] (imputed)	N
1675	chr3	142982898	142982899	rs9810857	20732626	Mick E	2010-05-14	J Am Acad Child Adolesc Psychiatry	Family-based genome-wide association scan of attention-deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	735 trios from 732 families	NA	3q24	SLC9A9	rs9810857-T	0.49	6E-6		1.41	[NR]	Illumina [835136]	N
1676	chr3	143005028	143005029	rs17636071	23374588	Martinelli-Boneschi F	2013-01-29	Neurobiol Aging	Pharmacogenomics in Alzheimer's disease: a genome-wide association study of response to cholinesterase inhibitors.	Response to cholinesterase inhibitors in Alzheimer's disease	92 European ancestry cases, 77 European ancestry controls	94 European ancestry cases, 74 European ancestry controls		SLC9A9	rs17636071-G	0.09	2E-6	(MMSE)	4.74	[NR] unit decrease	Illumina [522109]	N
1676	chr3	143016477	143016478	rs1135438	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Ulna and radius bone mineral density	2,286 European ancestry individuals	NA	3q24	SLC9A9	rs1135438-?	NR	9E-6				Affymetrix [753382]	N
1676	chr3	143023596	143023597	rs7428843	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q24	SLC9A9	rs7428843-T	0.70078	5E-11		0.015916651	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1676	chr3	143028186	143028187	rs17636599	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (2df test)	6,254 European ancestry individuals	NA	3q24	SLC9A9	rs17636599-T	0.011	2E-7				NR [2411114] (imputed)	N
1676	chr3	143028186	143028187	rs17636599	32227373	Osazuwa-Peters OL	2020-03-29	Genet Epidemiol	Identifying blood pressure loci whose effects are modulated by multiple lifestyle exposures.	Systolic blood pressure x quantitative lifestyle risk score interaction (1df test)	6,254 European ancestry individuals	NA	3q24	SLC9A9	rs17636599-T	0.011	2E-6		2.41	[1.41-3.41] unit decrease	NR [2411114] (imputed)	N
1676	chr3	143056466	143056467	rs7632299	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (lobular)	236 European ancestry cases	NA	3q24	intergenic	rs7632299-A	0.17	4E-6		0.45	[NR] unit increase	Illumina [324623]	N
1676	chr3	143103668	143103669	rs201023017	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to carboplatin and paclitaxel in ovarian cancer (MTT IC50)	74 lymphoblastoid cell lines	NA	3q24	SLC9A9	rs201023017-?	NR	6E-7				Illumina [6243550] (imputed)	N
1677	chr3	143165501	143165502	rs1875463	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	3q24	SLC9A9	rs1875463-?	NR	2E-6		1.1116052		Illumina [129464] (imputed)	N
1677	chr3	143191552	143191553	rs838625	31598132	Donati G	2019-06-30	Mind Brain Educ	Genome-Wide Association Study of Latent Cognitive Measures in Adolescence: Genetic Overlap With Intelligence and Education.	Working memory	4,611 European ancestry adolescents	NA	3q24	SLC9A9	rs838625-?	NR	3E-6		0.1	[0.061-0.139] unit increase	Illumina [6319684] (imputed)	N
1677	chr3	143193110	143193111	rs35312258	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	3q24	NR	rs35312258-G	0.17	4E-6				Illumina [1830000] (imputed)	N
1677	chr3	143210188	143210189	rs1404568	28167095	Forno E	2017-02-04	J Allergy Clin Immunol	Genome-wide interaction study of dust mite allergen on lung function in children with asthma.	Lung function (FEV1) in asthma (dust mite allergen exposure interaction)	440 Puerto Rican ancestry child cases	497 European ancestry child cases, 605 Hispanic child cases	3q24	NR	rs1404568-G	0.18	2E-6				Illumina [1830000] (imputed)	N
1677	chr3	143214461	143214462	rs10935496	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3q24	SLC9A9	rs10935496-A	NR	3E-8	(GO:0015238|MF|03|drug transmembrane transporter activity)	5.527629	NR Z-score decrease	Illumina [8100000] (imputed)	N
1677	chr3	143250069	143250070	rs1371924	17903302	Levy D	2007-09-19	BMC Med Genet	Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.	Tonometry	644 individuals	NA	3q24	SLC9A9	rs1371924-?	NR	4E-6	(RWLTA)			Affymetrix [70897]	N
1678	chr3	143301466	143301467	rs185347221	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q24	SLC9A9	rs185347221-A	0.0011	4E-6		1.7791	[1.02-2.54] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1678	chr3	143311259	143311260	rs4839603	29207912	Nishizawa D	2017-12-06	Pharmacogenomics	Genome-wide scan identifies candidate loci related to remifentanil requirements during laparoscopic-assisted colectomy.	Opioid requirements during laparoscopic-assisted colectomy	117 Japanese ancestry patients	234 Japanese ancestry patients	3q24	SLC9A9	rs4839603-C	NR	4E-6	(additive model)	0.03503	unit decrease	Illumina [921239]	N
1678	chr3	143348244	143348245	rs115134572	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	3q24	SLC9A9	rs115134572-?		6E-7		0.4727	[NR] unit decrease	Illumina [7174392] (imputed)	N
1679	chr3	143405323	143405324	rs1868175	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3q24	SLC9A9	rs1868175-A	0.748	7E-17		0.22	[0.17-0.27] unit increase	Affymetrix [339439]	N
1679	chr3	143424821	143424822	rs2800	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	3q24	SLC9A9	rs2800-G	0.34	3E-6	(ALT)	0.61	[NR] unit increase	Illumina [324623]	N
1679	chr3	143443102	143443103	rs7645841	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QT interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	NR	rs7645841-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1679	chr3	143443978	143443979	rs73152900	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota relative abundance (bacterial taxa)	up to 858 Metropolitan French ancestry individuals	NA	3q24	NR	rs73152900-?	NR	9E-10	(Blautia_glucerasea)	0.983287	[0.7-1.27] unit increase	Illumina [5293637] (imputed)	N
1679	chr3	143471200	143471201	rs9880173	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q24		rs9880173-A	0.46	4E-10		6.27	z score increase	Affymetrix [9061022] (imputed)	N
1679	chr3	143471200	143471201	rs9880173	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q24		rs9880173-A	0.46	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1679	chr3	143471200	143471201	rs9880173	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q24	NR	rs9880173-A	0.4645	2E-10				NR [9056863] (imputed)	N
1679	chr3	143504532	143504533	rs2166775	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	3q24	SLC9A9	rs2166775-G	NR	3E-6	(EA)	0.99	[0.54-1.44] unit increase	Affymetrix [~ 2300000] (imputed)	N
1680	chr3	143613182	143613183	rs11712608	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Total body bone mineral density	2,286 European ancestry individuals	NA	3q24	C3orf58	rs11712608-?	NR	8E-8				Affymetrix [753382]	N
1680	chr3	143636420	143636421	rs2885198	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q24		rs2885198-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1680	chr3	143636420	143636421	rs2885198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q24		rs2885198-A	0.5318	5E-10		0.0088	[0.0061-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1680	chr3	143636420	143636421	rs2885198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q24	Intergenic	rs2885198-A	0.5318	1E-10	(MTAG)	0.0084	[0.0059-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1680	chr3	143636420	143636421	rs2885198	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q24	Intergenic	rs2885198-A	0.5334	5E-9	(MTAG)	0.0135	[0.009-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1680	chr3	143650746	143650747	rs6779442	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q24	Intergenic	rs6779442-G	0.6123	9E-9		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1681	chr3	143688297	143688298	rs2164552	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q24	Intergenic	rs2164552-A	0.5764	3E-10	(MTAG)	0.0105	[0.0072-0.0138] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1681	chr3	143688309	143688310	rs2164553	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q24	Intergenic	rs2164553-A	0.5758	3E-10	(MTAG)	0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1681	chr3	143726979	143726980	rs7643341	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	3q24	C3orf58	rs7643341-T	0.4045	1E-8		0.012997491	[0.0085-0.0175] unit decrease	Affymetrix [11514463] (imputed)	N
1681	chr3	143741866	143741867	rs6778487	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q24	C3orf58	rs6778487-T	0.681	1E-12		0.009	[0.0065-0.0115] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1681	chr3	143762040	143762041	rs4839678	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	3q24	NR	rs4839678-?	NR	4E-6		2.6011	[1.5-3.71] unit decrease	Illumina [5779266] (imputed)	N
1681	chr3	143762040	143762041	rs4839678	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	3q24	NR	rs4839678-?	NR	4E-6		2.6011	[1.5-3.71] unit decrease	Illumina [5779266] (imputed)	N
1681	chr3	143772246	143772247	rs13068298	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q24	intergenic	rs13068298-T	NR	8E-6		0.102	[0.057-0.147] unit decrease	Illumina [628922]	N
1681	chr3	143778707	143778708	rs16854884	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences (feminism/equality)	9,617 European ancestry individuals	NA	3q24	intergenic	rs16854884-C	NR	7E-6		0.103	[0.058-0.148] unit increase	Illumina [628922]	N
1681	chr3	143780631	143780632	rs35887108	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q24	NR	rs35887108-T	0.258	2E-9		0.00752075	[0.0051-0.01] unit decrease	NR [9732723] (imputed)	N
1682	chr3	143796304	143796305	rs990320	25590795	Yazar S	2015-04-01	JAMA Ophthalmol	Genetic and environmental factors in conjunctival UV autofluorescence.	Conjunctival UV autofluorescence (CUVAF)	1,251 European ancestry individuals	NA	3q24	C3orf58	rs990320-?		4E-7		7.06	[4.34-9.78] unit decrease	Illumina [5003381] (imputed)	N
1682	chr3	143845891	143845892	rs1373866	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q24		rs1373866-C	0.311776	8E-9		0.013790101	[0.0091-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1682	chr3	143868349	143868350	rs16855026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q24		rs16855026-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1682	chr3	143902026	143902027	rs4839680	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q24	intergenic	rs4839680-?	0.033	1E-15			[NR]	Affymetrix, Illumina [152234]	N
1683	chr3	144031790	144031791	rs72999924	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs72999924-T	0.01045	2E-8	(AK1)	0.07983	NR unit decrease	Illumina [1671387] (imputed)	N
1684	chr3	144120827	144120828	rs150979174	34454985	Sliz E	2021-08-26	J Allergy Clin Immunol	Uniting biobank resources reveals novel genetic pathways modulating susceptibility for atopic dermatitis.	Atopic dermatitis	22,474 European ancestry cases, 774,187 European ancestry controls	NA	3q24	NR	rs150979174-a	0.9966	4E-8		0.6	[0.50-0.72]	Affymetrix, Illumina [16201029] (imputed)	N
1684	chr3	144158102	144158103	rs577499609	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q24	RP11-42F12.1	rs577499609-A	0.9977	1E-6		0.7373	[0.44-1.04] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1685	chr3	144267476	144267477	rs115673733	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3q24		rs115673733-T	NR	8E-7		1.3210039	[1.18-1.47]	Affymetrix [7846216] (imputed)	N
1685	chr3	144279298	144279299	rs77427247	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3q24	NR	rs77427247-A	0.004	5E-6		5.29	[2.58-10.83]	Illumina [8672852] (imputed)	N
1686	chr3	144311842	144311843	rs1007564	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q24	SLC9A9	rs1007564-?	NR	9E-6	(TAG 56:5)	0.14860794	[0.083-0.214] unit increase	Affymetrix [at least 2500000] (imputed)	N
1686	chr3	144340204	144340205	rs800082	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q24	intergenic	rs800082-?	0.42	3E-6	(PKYRS)	0.12	[NR] pack years increase	Illumina [~ 518000]	N
1686	chr3	144347034	144347035	rs71307987	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q24	NR	rs71307987-?	NR	7E-9				Illumina [7760689] (imputed)	N
1686	chr3	144377199	144377200	rs1164302	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	3q24	NR	rs1164302-C	0.01	3E-6		1.48	[1.32-1.64]	Illumina [8468885] (imputed)	N
1686	chr3	144377199	144377200	rs1164302	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Squamous cell lung carcinoma	7,426 European ancestry cases, 55,627 European ancestry controls	NA	3q24	C3orf58, PLOD2	rs1164302-C	0.016097125	5E-6		1.4910039	[1.256336139-1.769504647]	Illumina [10439017] (imputed)	N
1686	chr3	144430821	144430822	rs183670238	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	NR	rs183670238-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
1687	chr3	144455135	144455136	rs1512777	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	3q24	NR	rs1512777-T	NR	4E-6	(phenotype 2)	1.92	[NR]	Illumina [> 8000000] (imputed)	N
1690	chr3	144885294	144885295	rs66611252	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	3q24		rs66611252-?	NR	7E-6		0.06	[0.035-0.085] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1691	chr3	145051279	145051280	rs181870458	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3q24	GM2AP1	rs181870458-A		2E-7		0.4355	[0.27-0.6] unit increase	Illumina [NR]	N
1692	chr3	145173787	145173788	rs345013	17903305	Murabito JM	2007-09-19	BMC Med Genet	A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study.	Prostate cancer	59 cases, 558 controls	NA	3q24	intergenic	rs345013-?	NR	5E-6				Affymetrix [70897]	N
1692	chr3	145199618	145199619	rs644456	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q24	NR	rs644456-C	0.45	9E-6	(IFNalpha_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
1692	chr3	145217858	145217859	rs1481071	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	3q24		rs1481071-T	NR	9E-7		1.1224604	[1.08-1.17]	Illumina [11600722] (imputed)	N
1693	chr3	145230068	145230069	rs74346764	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (rectal bleeding) (time to event)	3,379 European ancestry individuals	NA	3q24	NR	rs74346764-?	0.05	3E-7		2.52	[1.77-3.58]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1693	chr3	145344596	145344597	rs12635648	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	3q24		rs12635648-C	NR	2E-6		1.1235955	[1.08-1.17]	Illumina [11600722] (imputed)	N
1695	chr3	145532324	145532325	rs11706895	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Corpus callosum mid-anterior volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q24	NR	rs11706895-?		5E-6				Illumina [4322238] (imputed)	N
1696	chr3	145680344	145680345	rs9814705	32313116	Manry J	2020-04-20	Commun Biol	Genome-wide association study of Buruli ulcer in rural Benin highlights role of two LncRNAs and the autophagy pathway.	Buruli ulcer	402 Sub-Saharan African ancestry cases, 401 Sub-Saharan African ancestry controls	455 Sub-Saharan African ancestry cases, 238 Sub-Saharan African ancestry controls	3q24	ENSG00000240095.1	rs9814705-C	0.1	3E-7		1.8	[1.43-2.27]	Illumina [10014109] (imputed)	N
1697	chr3	145794587	145794588	rs148051196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q24		rs148051196-C	NR	9E-12		0.0918	[0.066-0.118] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1697	chr3	145794587	145794588	rs148051196	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q24		rs148051196-C	0.007014	9E-12		0.0918004	[0.065-0.118] unit increase	Illumina [13479295] (imputed)	N
1697	chr3	145794587	145794588	rs148051196	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q24	PLOD2	rs148051196-?	NR	1E-12		0.13601403	[0.098-0.174] unit increase	Illumina [27896057] (imputed)	N
1697	chr3	145868488	145868489	rs7641322	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q24		rs7641322-?	NR	1E-15				NR [~ 8900000] (imputed)	N
1698	chr3	145888456	145888457	rs1913185	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q24	PLOD2	rs1913185-C	0.249	2E-7	(NEFA )	0.04	[NR] mmol/L increase	Illumina [899892]	N
1698	chr3	145924453	145924454	rs143201630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q24	NR	rs143201630-C	0.993193	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
1698	chr3	145924453	145924454	rs143201630	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q24	NR	rs143201630-C	0.992984	9E-15		0.095805	[0.072-0.12] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1698	chr3	145925340	145925341	rs73150828	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PLSCR4	rs73150828-?	NR	6E-10	(male)	3.19672	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1698	chr3	145948417	145948418	rs529174107	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q24	PLSCR4	rs529174107-C	0.00676200000000005	3E-13		0.104912356	[0.077-0.133] unit increase	Affymetrix [93095623] (imputed)	N
1698	chr3	145990184	145990185	rs143011636	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q24		rs143011636-C	NR	3E-9		0.0869	[0.058-0.116] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1698	chr3	145990184	145990185	rs143011636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q24	NR	rs143011636-T	0.992955	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
1698	chr3	145990184	145990185	rs143011636	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q24	NR	rs143011636-T	0.992765	5E-11		0.078467	[0.055-0.102] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1700	chr3	146147612	146147613	rs563551865	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	3q24	NR	rs563551865-T	0.0126	2E-6		0.6234	[0.37-0.88] unit decrease	Illumina [7305641] (imputed)	N
1700	chr3	146202301	146202302	rs533070307	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3q24	PLSCR2	rs533070307-A	0.9979	6E-6		0.6177	[0.35-0.89] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1700	chr3	146268615	146268616	rs13099587	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (beta diversity)	1,812 European ancestry individuals	371 European ancestry individuals	3q24	PLSCR1	rs13099587-?	NR	5E-8		0.7	NR percent increase	Affymetrix, Illumina [6344846] (imputed)	N
1701	chr3	146276940	146276941	rs569393151	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q24		rs569393151-C	0.992251	3E-8		0.135323	[0.087-0.183] unit increase	NR [11722792] (imputed)	N
1701	chr3	146362717	146362717	rs36008198	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs36008198-?	NR	7E-10	(right vessel)			NR [9227495] (imputed)	N
1701	chr3	146363008	146363009	rs34803973	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q24		rs34803973-C	0.599	2E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
1701	chr3	146364423	146364424	rs1674589	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q24	NR	rs1674589-A	0.402	1E-8		0.00629152	[0.0041-0.0084] unit decrease	NR [9732723] (imputed)	N
1701	chr3	146368186	146368187	rs9842222	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs9842222-?	NR	5E-9	(right vessel)			NR [9227495] (imputed)	N
1701	chr3	146369165	146369166	rs9847565	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q24		rs9847565-G	0.46	5E-11		6.57	z score increase	Affymetrix [9061022] (imputed)	N
1701	chr3	146370309	146370310	rs57946797	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs57946797-?	NR	3E-11	(right vessel)			NR [9227495] (imputed)	N
1701	chr3	146371032	146371033	rs4681329	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs4681329-?	NR	2E-12	(right vessel)			NR [9227495] (imputed)	N
1701	chr3	146376450	146376451	rs6762490	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	3q24	PLSCR5	rs6762490-A	0.3996	8E-7		0.0281	[0.017-0.039] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1701	chr3	146378340	146378341	rs4681330	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 79)	19,670 European ancestry individuals	NA	3q24		rs4681330-?	NR	9E-11				NR [9705931] (imputed)	N
1701	chr3	146402170	146402171	rs1912785	22961001	Su Z	2012-09-09	Nat Genet	Common variants at the MHC locus and at chromosome 16q24.1 predispose to Barrett's esophagus.	Barrett's esophagus	Up to 1,852 European ancestry cases, 5,172 European ancestry controls	5,986 European ancestry cases, 12,825 European ancestry controls	3q24	NR	rs1912785-?	NR	8E-6	(Circumference)	0.15	[0.091-0.209] unit decrease	Illumina [521744]	N
1701	chr3	146406711	146406712	rs78055519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs78055519-T	0.01394	7E-10	(SH3BGRL3)	0.01989	NR unit increase	Illumina [1671387] (imputed)	N
1701	chr3	146406711	146406712	rs78055519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs78055519-T	0.01394	3E-8	(VIM)	1.329	NR unit increase	Illumina [1671387] (imputed)	N
1701	chr3	146406711	146406712	rs78055519	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs78055519-T	0.01394	1E-8	(ABCB6)	0.04214	NR unit increase	Illumina [1671387] (imputed)	N
1702	chr3	146409182	146409183	rs114774257	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q24	NR	rs114774257-?	NR	5E-6				Affymetrix [5486770] (imputed)	N
1702	chr3	146418761	146418762	rs7650609	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	3q24	NR	rs7650609-G	0.332888	7E-7		1.0718113	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1702	chr3	146474789	146474790	rs73162807	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Platelet-derived growth factor BB levels	8,293 Finnish ancestry individuals	NA	3q24	NR	rs73162807-C		2E-6		0.2391	[0.14-0.34] SD units increase	NR [10700000] (imputed)	N
1703	chr3	146574036	146574037	rs7645625	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	3q24	NR	rs7645625-G		4E-6		0.1086	[0.062-0.155] SD units increase	NR [10700000] (imputed)	N
1703	chr3	146632163	146632164	rs12629805	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q24	PLSCR5	rs12629805-C	0.10	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1703	chr3	146639585	146639589	rs200803778	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3q24	LOC101927866	rs200803778-?	NR	7E-7	(AA)	0.152	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1705	chr3	146816710	146816711	rs4681346	24039173	McGrath LM	2013-09-13	Am J Med Genet B Neuropsychiatr Genet	Genetic predictors of risk and resilience in psychiatric disorders: a cross-disorder genome-wide association study of functional impairment in major depressive disorder, bipolar disorder, and schizophrenia.	Functional impairment in major depressive disorder, bipolar disorder and schizophrenia	2,246 European ancestry individuals	NA	3q24	intergenic	rs4681346-?	NR	3E-6	(MCS)			Affymetrix [1633452] (imputed)	N
1705	chr3	146929104	146929105	rs78558203	27611488	Almoguera B	2016-09-09	Am J Respir Crit Care Med	Identification of Four Novel Loci in Asthma in European American and African American Populations.	Adult asthma	337 African American allergic asthma cases, 321 African American non-allergic asthma cases, 1,367 African American controls, 466 European American allergic asthma cases, 626 European American non-allergic asthma cases, 7,878 European American controls	NA	3q24	ZIC4	rs78558203-?	NR	4E-6		0.557	[0.32-0.79] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1706	chr3	146939005	146939006	rs6440475	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q24		rs6440475-C	NR	6E-6	(GLM)	0.9637	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1706	chr3	146947518	146947519	rs189504960	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q24	Intergenic	rs189504960-T	0.946	3E-6	(AA)	0.204	NR unit increase	Illumina [NR] (imputed)	N
1706	chr3	146964601	146964602	rs6807386	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q24	ZIC4	rs6807386-T	0.6411	5E-8		0.014650735	[0.0094-0.0199] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1706	chr3	146985763	146985764	rs1354053	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q24		rs1354053-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1706	chr3	146993394	146993395	rs34166650	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q24	NR	rs34166650-A	NR	6E-7	(GEE model)	0.44474	[0.27-0.62] unit decrease	NR [NR] (imputed)	N
1706	chr3	146993778	146993779	rs61508189	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs61508189-A	0.4534	3E-10	(Lingual)	11.095825	[7.64-14.55] unit increase	Affymetrix, Illumina [NR]	N
1706	chr3	147000265	147000266	rs1814982	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q24		rs1814982-?	NR	3E-28				NR [~ 8900000] (imputed)	N
1706	chr3	147011652	147011653	rs9289745	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q24		rs9289745-G	NR	1E-15		0.0106	[0.0081-0.0131] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1706	chr3	147033896	147033897	rs113270900	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3q24	NR	rs113270900-C	0.753478	1E-8		0.0127604	[0.0084-0.0171] unit decrease	Affymetrix [15000001]	N
1706	chr3	147052281	147052282	rs62275345	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	3q24	intergenic	rs62275345-?	NR	2E-8		7.01024E-4	[-0.00486-0.00626] unit increase	Affymetrix [25921788] (imputed)	N
1706	chr3	147052281	147052282	rs62275345	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	3q24	intergenic	rs62275345-?	NR	2E-8		0.0158796	[0.01-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1706	chr3	147053922	147053923	rs62275346	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3q24	intergenic	rs62275346-A	NR	6E-6	(EA)			Illumina [up to 11995908] (imputed)	N
1706	chr3	147056429	147056430	rs73166642	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q24		rs73166642-?	NR	8E-11				NR [9705931] (imputed)	N
1707	chr3	147090583	147090583	rs3058046	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs3058046-?	NR	2E-8	(left postcentral)			NR [9227495] (imputed)	N
1707	chr3	147090583	147090583	rs3058046	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs3058046-?	NR	1E-8	(right postcentral)			NR [9227495] (imputed)	N
1707	chr3	147093599	147093600	rs1503738	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs1503738-A	0.3529	1E-9	(Pars Orbitalis)	2.5032868	[1.7-3.31] unit increase	Affymetrix, Illumina [NR]	N
1707	chr3	147093599	147093600	rs1503738	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs1503738-?	NR	1E-8	(right pars triangularis)			NR [9227495] (imputed)	N
1707	chr3	147094221	147094222	rs7635829	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q24	ZIC4	rs7635829-A	0.2395	5E-8		0.015117136	[0.0097-0.0205] unit increase	Affymetrix [11515109] (imputed)	N
1707	chr3	147098209	147098210	rs1503729	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs1503729-?	NR	2E-9	(right pars triangularis)			NR [9227495] (imputed)	N
1707	chr3	147105789	147105790	rs2279830	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs2279830-T	0.3937	9E-18	(Postcentral)	18.86849	[14.56-23.18] unit increase	Affymetrix, Illumina [NR]	N
1707	chr3	147106318	147106319	rs2279829	34929384	Mekki Y	2021-12-17	Neuroimage	The genetic architecture of language functional connectivity.	Language functional connectivity	32,186 British ancestry individuals	NA	3q24	ZIC4	rs2279829-C	0.212	8E-21		9.365444	unit increase (z-stat)	Affymetrix [9812367] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	3q24		rs2279829-T	0.21	5E-11				NR [13131314] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	5,199 individuals	NA	3q24		rs2279829-T	0.21	1E-13				Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q24		rs2279829-T	0.21	1E-279		35.73	z score increase	Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	5,199 individuals	NA	3q24		rs2279829-T	0.21	8E-8				Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q24		rs2279829-T	0.21	2E-108		22.13	z score increase	Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	3q24		rs2279829-T	0.21	1E-16				NR [13131314] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	5,199 individuals	NA	3q24		rs2279829-T	0.21	8E-13				Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q24		rs2279829-T	0.21	5E-184		28.93	z score increase	Affymetrix [9061022] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q24	NR	rs2279829-T	0.2175	1E-17				NR [9056863] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q24	NR	rs2279829-T	0.2175	1E-17				NR [9056863] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q24		rs2279829-C	0.788	3E-18		0.013	[0.011-0.015] unit increase	NR [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q24		rs2279829-?	NR	1E-79				NR [9705931] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	33723403	Sha Z	2021-03-15	Nat Hum Behav	The genetic architecture of structural left-right asymmetry of the human brain.	Left-right brain asymmetry	32,256 European ancestry individuals	NA	3q24	ZIC4	rs2279829-T	0.22	1E-9				NR [9312144] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q24	ZIC4	rs2279829-?		5E-18	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q24	ZIC4	rs2279829-?		3E-23	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q24	ZIC4	rs2279829-?		3E-17	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	3q24	ZIC4	rs2279829-?		3E-46	(Postcentral)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	3q24	ZIC4	rs2279829-?		2E-26	(Supramarginal)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	3q24	ZIC4	rs2279829-?		1E-45	(Pars triangularis)			Affymetrix, Illumina [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q24	NR	rs2279829-?		7E-14				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3q24	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs2279829-?		8E-13				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	3q24	ROR1	rs2279829-?		2E-27				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3q24	RDH14, NT5C1B-RDH14, NT5C1B	rs2279829-?		1E-76				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q24	PEAR1, LRRC71, ARHGEF11, ETV3L	rs2279829-?		2E-26				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q24	ZIC4, ZIC1	rs2279829-?		5E-87				NR [7428630] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs2279829-T	0.2165	2E-49	(Pars Triangularis)	16.281336	[14.12-18.44] unit increase	Affymetrix, Illumina [NR]	N
1707	chr3	147106318	147106319	rs2279829	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs2279829-T	0.2158	5E-43	(Postcentral)	36.30173	[31.13-41.48] unit decrease	Affymetrix, Illumina [NR]	N
1707	chr3	147106318	147106319	rs2279829	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs2279829-T	0.2152	4E-26	(Supramarginal)	30.753056	[25.06-36.45] unit decrease	Affymetrix, Illumina [NR]	N
1707	chr3	147106318	147106319	rs2279829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs2279829-?	NR	6E-10	(left pars triangularis)			NR [9227495] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs2279829-?	NR	3E-15	(right pars triangularis)			NR [9227495] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs2279829-?	NR	1E-13	(right postcentral)			NR [9227495] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs2279829-?	NR	1E-12	(left postcentral)			NR [9227495] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Parietal lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	3q24	ZIC4	rs2279829-T	0.21	4E-10		0.954	[0.65-1.25] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Risk-taking tendency (4-domain principal component model)	315,894 European ancestry individuals	NA	3q24	ZIC4	rs2279829-T	0.2149	6E-9		0.018225709	[0.012-0.024] unit decrease	Affymetrix [~ 11515000] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q24	ZIC4	rs2279829-T	0.215	1E-13		0.021306567	[0.016-0.027] unit decrease	Affymetrix [11515109] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q24	NR	rs2279829-T	0.216	1E-11		0.00884693	[0.0063-0.0114] unit decrease	NR [9732723] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q24	NR	rs2279829-T	0.216	2E-8		0.017376566	[0.011-0.023] unit decrease	NR [~ 10000000] (imputed)	N
1707	chr3	147106318	147106319	rs2279829	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q24	NR	rs2279829-T	0.215	1E-8		0.00918408	[0.006-0.0123] unit decrease	NR [~ 9732723] (imputed)	N
1707	chr3	147107664	147107665	rs16859408	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs16859408-?	NR	5E-8	(left postcentral)			NR [9227495] (imputed)	N
1707	chr3	147112255	147112256	rs530580221	27089180	Day FR	2016-04-18	Nat Genet	Physical and neurobehavioral determinants of reproductive onset and success.	Age at first sexual intercourse	59,357 British ancestry males, 66,310 British ancestry females	NA	3q24	ZIC4	rs530580221-T	0.38334599999999996	2E-9		0.0257722	[0.017-0.034] unit increase	Affymetrix [641018] (imputed)	N
1707	chr3	147112255	147112255	rs752703112	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	3q24	ZIC4	rs752703112-TA	0.614559	2E-9		0.0138089	[0.0093-0.0184] unit decrease	NR [16516521] (imputed)	N
1707	chr3	147114865	147114865	rs143830108	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs143830108-?	NR	1E-11	(right pars triangularis)			NR [9227495] (imputed)	N
1707	chr3	147121750	147121751	rs6766244	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs6766244-T	0.2216	4E-11	(Pars Triangularis)	7.1572623	[5.04-9.28] unit decrease	Affymetrix, Illumina [NR]	N
1707	chr3	147147669	147147670	rs6440478	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3q24	NA	rs6440478-T		1E-8		0.0108131	[0.0071-0.0145] unit increase	Illumina [13288253] (imputed)	N
1707	chr3	147164765	147164766	rs11916082	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs11916082-?	NR	5E-10	(right postcentral)			NR [9227495] (imputed)	N
1707	chr3	147171351	147171352	rs9881533	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs9881533-A	0.1379	1E-14	(Pars Triangularis)	10.124787	[7.55-12.7] unit increase	Affymetrix, Illumina [NR]	N
1708	chr3	147209178	147209179	rs12629668	31264924	Meng W	2019-07-02	Ophthalmic Genet	A genome-wide association study implicates that the TTC39C gene is associated with diabetic maculopathy with decreased visual acuity.	Diabetic maculopathy in type 2 diabetes	1,240 Scottish ancestry cases, 1,374 Scottish ancestry controls	NA	3q24	NR	rs12629668-?	NR	4E-7		1.397	[1.228-1.591]	Affymetrix, Illumina [6717712] (imputed)	N
1708	chr3	147220939	147220939	rs137962487	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs137962487-?	NR	7E-9	(right postcentral)			NR [9227495] (imputed)	N
1708	chr3	147220939	147220939	rs137962487	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs137962487-?	NR	4E-10	(right pars triangularis)			NR [9227495] (imputed)	N
1708	chr3	147220939	147220939	rs137962487	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs137962487-?	NR	2E-9	(left postcentral)			NR [9227495] (imputed)	N
1708	chr3	147227162	147227163	rs78155705	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q24	NR	rs78155705-T	0.0877	6E-16	(Postcentral)	31.072056	[23.54-38.6] unit decrease	Affymetrix, Illumina [NR]	N
1708	chr3	147292392	147292393	rs4596113	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q24		rs4596113-A	0.328707	1E-8		0.0121418	[0.008-0.0163] unit decrease	Illumina [13479295] (imputed)	N
1708	chr3	147292392	147292393	rs4596113	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q24	LOC440982, AGTR1	rs4596113-?	NR	1E-7		0.015971042	[0.01-0.022] unit decrease	Illumina [27896057] (imputed)	N
1708	chr3	147301021	147301022	rs190306391	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Plantar warts	24,994 European ancestry cases, 37,451 European ancestry controls	NA	3q24	NR	rs190306391-?	NR	5E-6		0.7024	[0.39-1.02] unit increase	Illumina [at least 560000] (imputed)	N
1708	chr3	147310717	147310718	rs111916630	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	3q24		rs111916630-A	NR	5E-6	(GLM)	6.7737	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1709	chr3	147382799	147382800	rs9289758	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	3q24	NR	rs9289758-G	NR	6E-9		0.1	[0.061-0.139] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1709	chr3	147382799	147382800	rs9289758	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	3q24	NR	rs9289758-G	NR	3E-9				Affymetrix, Illumina [NR] (imputed)	N
1709	chr3	147385622	147385623	rs2319326	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3q24	ZIC1	rs2319326-T	NR	2E-6	(daytime napping duration)	0.1073	[0.063-0.152] unit increase	Affymetrix [7141204] (imputed)	N
1709	chr3	147395071	147395072	rs13324393	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Esophageal or stomach cancer	1,091 European ancestry cases, 410,350 European ancestry controls	NA	3q24		rs13324393-A	0.121031	6E-7		1.3460763	NR	Affymetrix [7846216] (imputed)	N
1709	chr3	147416399	147416400	rs73151930	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	3q24	ZIC1	rs73151930-C	NR	1E-6	(daytime napping duration, weekdays)	0.1041	[0.062-0.146] unit increase	Affymetrix [7141204] (imputed)	N
1709	chr3	147442814	147442815	rs10446280	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q24	NR	rs10446280-?	NR	4E-9	(right cuneus)			NR [9227495] (imputed)	N
1710	chr3	147526039	147526040	rs72995528	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q24	NR	rs72995528-?	NR	6E-7		0.5172	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1711	chr3	147653590	147653591	rs7613691	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-4 levels	8,124 Finnish ancestry individuals	NA	3q24	NR	rs7613691-G		4E-6		0.1775	[0.1-0.25] SD units decrease	NR [10700000] (imputed)	N
1711	chr3	147683643	147683644	rs62277117	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q24	NR	rs62277117-?	NR	1E-8				Illumina [7760689] (imputed)	N
1711	chr3	147707459	147707460	rs62273875	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q24	ZIC1	rs62273875-?		8E-12				Affymetrix, Illumina [NR] (imputed)	N
1711	chr3	147716497	147716498	rs12634936	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q24	ZIC1	rs12634936-T	0.943292	9E-9		0.0181042	[0.012-0.024] unit decrease	Affymetrix [12370749]	N
1711	chr3	147716497	147716498	rs12634936	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q24	NR	rs12634936-?	NR	7E-10				Affymetrix [~ 8270000] (imputed)	N
1711	chr3	147716497	147716498	rs12634936	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q24		rs12634936-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1712	chr3	147719647	147719648	rs2319545	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q24	NR	rs2319545-A	0.149099	8E-11	(Conditioned on chr3:147106319)	0.02323662	[0.016-0.03] unit increase	NR [~ 10000000] (imputed)	N
1712	chr3	147738685	147738686	rs6440526	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q24	NR	rs6440526-T	0.15	4E-9		0.00892559	[0.006-0.0119] unit increase	NR [9732723] (imputed)	N
1712	chr3	147756685	147756686	rs1841770	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis	978 European ancestry cases, 883 European ancestry controls	NA	3q24	ZIC1	rs1841770-?	0.53	8E-6		1.34	[NR]	Illumina [551642]	N
1712	chr3	147763845	147763846	rs1599641	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 80)	19,670 European ancestry individuals	NA	3q24		rs1599641-?	NR	8E-9				NR [9705931] (imputed)	N
1712	chr3	147804235	147804236	rs76036841	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q24	NR	rs76036841-G	0.0533	2E-12				NR [9056863] (imputed)	N
1712	chr3	147804235	147804236	rs76036841	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	3q24	ZIC1, AGTR1	rs76036841-?	NR	2E-9		0.057	[0.039-0.076] unit increase	Illumina [12039491] (imputed)	N
1712	chr3	147829476	147829477	rs12495832	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	3q24	ZIC1, AGTR1	rs12495832-?	NR	4E-9		1.1494253	[1.1-1.2]	Illumina [13537761] (imputed)	N
1713	chr3	147862400	147862401	rs59359598	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q24		rs59359598-?	NR	3E-17				NR [~ 8900000] (imputed)	N
1713	chr3	147870351	147870352	rs115396057	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q24		rs115396057-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1713	chr3	147874633	147874634	rs141311255	31049640	Chen J	2019-05-02	Diabetologia	Genome-wide association study of type 2 diabetes in Africa.	Type 2 diabetes	2,633 African ancestry cases, 1,714 African ancestry controls	NA	3q24	LOC440982, AGTR1	rs141311255-C	0.938	8E-7		1.45	[1.24-1.70]	Affymetrix, Illumina [12148595] (imputed)	N
1713	chr3	147879430	147879431	rs77173971	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3q24	Intergenic	rs77173971-T	0.99	1E-6		0.168	NR unit increase	Illumina [NR] (imputed)	N
1713	chr3	147891873	147891874	rs77640487	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q24		rs77640487-T	0.05	6E-15		7.81	z score increase	Affymetrix [9061022] (imputed)	N
1713	chr3	147891873	147891874	rs77640487	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q24		rs77640487-T	0.05	1E-10		6.43	z score increase	Affymetrix [9061022] (imputed)	N
1717	chr3	148392816	148392817	rs116274860	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	3q24	NR	rs116274860-G	NR	3E-6		0.819	[0.48-1.16] SD units decrease	NR [10700000] (imputed)	N
1717	chr3	148423692	148423693	rs12721304	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs12721304-C	0.0122	7E-10	(GSTT2B)	0.1472	NR unit increase	Illumina [1671387] (imputed)	N
1717	chr3	148442639	148442640	rs12695894	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q24	NR	rs12695894-?	NR	5E-12				Affymetrix [NR]	N
1717	chr3	148481022	148481023	rs79019069	25820613	Warrington NM	2015-03-27	Hum Mol Genet	Genome-wide association study of blood lead shows multiple associations near ALAD.	Lead levels in blood	5,433 individuals	NA	3q24	AGTR1, CPB1	rs79019069-A	0.974	2E-6		0.276	[0.11-0.45] unit increase	Illumina [6391392] (imputed)	N
1718	chr3	148510818	148510819	rs73160745	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q24	NR	rs73160745-A	0.02091	1E-10	(USP5)	0.1353	NR unit increase	Illumina [1671387] (imputed)	N
1718	chr3	148562396	148562397	rs13318851	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPB1	5,363 Icelandic ancestry individuals	NA	3q24		rs13318851-C	0.2452	3E-35		0.270769	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
1718	chr3	148562398	148562399	rs13318853	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q24	CPB1	rs13318853-G	0.7509375	1E-19	(CPB1, 6356_3_3)	0.25740075	[0.2-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1718	chr3	148562398	148562399	rs13318853	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q24	CPB1	rs13318853-A	0.232	2E-18	(Carboxypeptidase B, CPB1.6356.3.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
1718	chr3	148588191	148588192	rs1610203	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q24		rs1610203-T	NR	2E-8		0.0256	[0.017-0.035] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1718	chr3	148606724	148606725	rs1949350	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q24	NR	rs1949350-G	0.3662	8E-16				NR [9056863] (imputed)	N
1718	chr3	148608775	148608776	rs4681160	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q24		rs4681160-T	0.35	1E-14		7.69	z score increase	Affymetrix [9061022] (imputed)	N
1718	chr3	148609703	148609704	rs1516527	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q24	CPA3, RP11-680B3.2	rs1516527-C	0.9510622	5E-12		0.035351098	[0.025-0.045] unit decrease	Affymetrix [93095623] (imputed)	N
1718	chr3	148609703	148609704	rs1516527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q24	NR	rs1516527-C	0.951648	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1718	chr3	148609703	148609704	rs1516527	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q24	NR	rs1516527-C	0.951148	2E-12		0.032276	[0.023-0.041] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1718	chr3	148609703	148609704	rs1516527	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q24		rs1516527-?	NR	1E-12				NR [~ 8900000] (imputed)	N
1718	chr3	148615286	148615287	rs3819340	26112879	Rudkowska I	2015-06-20	J Nutrigenet Nutrigenomics	Interaction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.	LDL peak particle diameter (total fat intake interaction)	541 European ancestry individuals	NA	3q24	CPA3	rs3819340-G	0.04	9E-7		0.07	[0.031-0.109] unit increase	Illumina [1632371] (imputed)	N
1718	chr3	148620127	148620128	rs6772643	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q24		rs6772643-T	0.34	4E-28		10.99	z score increase	Affymetrix [9061022] (imputed)	N
1718	chr3	148620127	148620128	rs6772643	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q24		rs6772643-T	0.34	4E-22		9.67	z score increase	Affymetrix [9061022] (imputed)	N
1718	chr3	148620127	148620128	rs6772643	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q24	NR	rs6772643-T	0.3559	1E-17				NR [9056863] (imputed)	N
1718	chr3	148622967	148622968	rs10935733	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q24	CPA3, AGTR1	rs10935733-T	0.399137	2E-13		0.019369	[0.014-0.025] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1718	chr3	148622967	148622968	rs10935733	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	3q24	CPA3	rs10935733-T	0.42	6E-10		0.0231	[0.016-0.03] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1718	chr3	148623773	148623774	rs7647448	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	3q24	NR	rs7647448-T	0.4	1E-10		0.021	[0.015-0.027] z score decrease	Affymetrix [up to 10400000] (imputed)	N
1719	chr3	148678679	148678680	rs721920	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3q24	GYG1	rs721920-G	0.166889902247442	3E-6		0.0033501	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1719	chr3	148692314	148692315	rs6788994	32108986	Price KM	2020-02-27	Genes Brain Behav	Genome-Wide Association Study of Word Reading: Overlap with Risk Genes for Neurodevelopmental Disorders.	Reading disability	4,494 European ancestry cases, 306 European ancestry siblings	NA	3q24	NR	rs6788994-A	NR	8E-6		4.476	z score increase	Illumina [5300000] (imputed)	N
1719	chr3	148701114	148701115	rs9814789	31993563	Ware EB	2019-11-22	Mayo Clin Proc Innov Qual Outcomes	Genome-wide Association Study of 24-Hour Urinary Excretion of Calcium, Magnesium, and Uric Acid.	Urinary calcium excretion	6,462 European ancestry individuals	NA	3q24	intergenic	rs9814789-A	0.25	2E-6		8.07	NR mg increase	NR [NR] (imputed)	N
1719	chr3	148712254	148712255	rs9819077	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q24		rs9819077-G	NR	2E-9		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1719	chr3	148714248	148714249	rs143137713	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	3q24		rs143137713-?	NR	1E-10		0.100757	[0.067-0.134] unit decrease	NR [9800000] (imputed)	N
1719	chr3	148714893	148714894	rs6802828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q24		rs6802828-C	NR	2E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1719	chr3	148714893	148714894	rs6802828	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q24	NR	rs6802828-C	0.339215	4E-11		0.012654	[0.0089-0.0164] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1719	chr3	148714893	148714894	rs6802828	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q24		rs6802828-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1719	chr3	148735002	148735003	rs3772571	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q24	NR	rs3772571-?	NR	6E-9				Affymetrix [~ 8270000] (imputed)	N
1719	chr3	148735002	148735003	rs3772571	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q24		rs3772571-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1719	chr3	148756824	148756825	rs6764352	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3q24	NR	rs6764352-?		2E-7	(PCB194)	0.81	[0.52-1.1] unit increase	Illumina [8736858] (imputed)	N
1720	chr3	148805052	148805053	rs751845	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q24		rs751845-G	NR	1E-8		0.0113	[0.0074-0.0152] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1720	chr3	148828649	148828650	rs1850890	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q24		rs1850890-A	0.321158	9E-15		0.01878585	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr3	148849810	148849811	rs2085501	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q24	HPS3	rs2085501-G	0.203537	4E-12		0.019242391	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1720	chr3	148873178	148873179	rs181648651	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	3q24		rs181648651-C	0.99773	7E-23		0.43658	[0.35-0.52] unit decrease	NR [11722792] (imputed)	N
1721	chr3	148913125	148913126	rs13072552	22075249	Tang WH	2011-11-10	Arterioscler Thromb Vasc Biol	Clinical and genetic association of serum ceruloplasmin with cardiovascular risk.	Serum ceruloplasmin levels	2,647 European ancestry individuals	2,050 European ancestry individuals	3q24	intergenic	rs13072552-T	0.079	2E-11		1.5	mg/dl increase	Affymetrix [2421770] (imputed)	N
1721	chr3	148917569	148917570	rs35331711	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	3q24		rs35331711-G	0.995274	4E-14		0.227443	[0.17-0.29] unit decrease	NR [11722792] (imputed)	N
1721	chr3	148926314	148926315	rs34951015	34523676	Jager S	2021-09-15	Hum Mol Genet	Blood copper and risk of cardiometabolic diseases-A Mendelian randomization study.	Copper levels	6,937 European or unknown ancestry individuals	NA	3q25.1		rs34951015-A	0.099	1E-9				Illumina [NR] (imputed)	N
1721	chr3	148929950	148929951	rs34004251	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Histidine levels	114,897 European ancestry individuals	NA	3q25.1		rs34004251-T	0.823583	9E-24		0.0548397	[0.044-0.066] unit increase	NR [11722792] (imputed)	N
1721	chr3	148968698	148968699	rs55846997	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q25.1	NR	rs55846997-?	NR	5E-6		1349.9935	NR unit increase	Illumina [2379855]	N
1721	chr3	148973464	148973465	rs13072463	34390503	Yang G	2021-08-14	Clin Pharmacol Ther	Genome-wide Association Study Identified Chromosome 8 Locus Associated with Medication-related Osteonecrosis of the Jaw.	Bisphosphonate-related osteonecrosis of the jaw in osteoporosis (oral bisphosphonate)	118 European ancestry cases, 1,251 European ancestry controls	NA	3q25.1		rs13072463-?	NR	6E-6		2.99	[1.86-4.8]	Illumina [126146] (imputed)	N
1721	chr3	148977313	148977314	rs7617219	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Subcutaneous adipose tissue	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q25.1	CP	rs7617219-A	0.60	1E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1721	chr3	149013934	149013935	rs143244591	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	3q25.1	RP11-206M11.7	rs143244591-G	0.96	4E-10	(AA)			Illumina [NR] (imputed)	N
1722	chr3	149047784	149047785	rs1820934	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q25.1		rs1820934-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1722	chr3	149054891	149054892	rs1602827	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q25.1	NR	rs1602827-?	NR	4E-43				Affymetrix [NR]	N
1722	chr3	149061732	149061733	rs73168819	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q25.1		rs73168819-A	0.406597	6E-18		0.019939087	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1722	chr3	149064152	149064153	rs12490113	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q25.1		rs12490113-A	0.469196	3E-14		0.017207453	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1722	chr3	149106495	149106496	rs35029970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q25.1		rs35029970-A	NR	5E-10		0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1722	chr3	149124782	149124783	rs7645585	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3q25.1	NR	rs7645585-C	0.253335	1E-8		0.0126101	[0.0082-0.017] unit decrease	Affymetrix [15000001]	N
1722	chr3	149157705	149157706	rs7610618	29531354	Malik R	2018-03-12	Nat Genet	Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.	Ischemic stroke (large artery atherosclerosis)	4,373 European ancestry cases, 406,111 European ancestry controls	NA	3q25.1	TM4SF4, TM4SF1	rs7610618-?	NR	1E-8				NR [~ 8000000] (imputed)	N
1723	chr3	149182085	149182086	rs60028604	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q25.1		rs60028604-T	NR	8E-28		0.0375	[0.031-0.044] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1723	chr3	149182752	149182753	rs58221944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3q25.1	NR	rs58221944-G	NR	6E-19		0.0409	[0.032-0.05] unit increase	Affymetrix [9000000] (imputed)	N
1723	chr3	149182752	149182753	rs58221944	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3q25.1	NR	rs58221944-G	NR	1E-20		0.0428	[0.034-0.052] unit decrease	Affymetrix [9000000] (imputed)	N
1723	chr3	149183822	149183823	rs12152541	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gallbladder polyp	458 European ancestry cases, 340,083 European ancestry controls, 843 East Asian ancestry cases, 167,459 East Asian ancestry controls	NA	3q25.1		rs12152541-A	NR	6E-10		0.3388	[0.23-0.45] unit decrease	Affymetrix, Illumina [20456458] (imputed)	N
1723	chr3	149186926	149186927	rs62272016	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	3q25.1	NR	rs62272016-?	NR	2E-15		0.06982	[0.053-0.087] unit decrease novel	Illumina [6108953] (imputed)	N
1723	chr3	149188161	149188162	rs78900599	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q25.1	TM4SF1, TM4SF4	rs78900599-A	0.93	7E-23		9.86	z-score increase	Affymetrix [4312306] (imputed)	N
1723	chr3	149193106	149193107	rs11710088	27577874	Evans DS	2016-08-29	Hum Mol Genet	Fine-mapping, novel loci identification, and SNP association transferability in a genome-wide association study of QRS duration in African Americans.	QRS duration	up to 13,031 African American individuals, 40,407 European ancestry individuals	NA	3q25.1	SCN5A	rs11710088-T	0.11	7E-6	(African American)	0.86	[0.7-1.02] millisecond increase	Affymetrix, Illumina [2955816] (imputed)	N
1723	chr3	149196751	149196752	rs34573045	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q25.1	NR	rs34573045-G	0.4202	2E-11		0.0311	[0.022-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1723	chr3	149205581	149205582	rs62272021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	3q25.1		rs62272021-A	0.043729593	2E-27		0.42742458	[0.35-0.5] unit increase	Illumina [13429768] (imputed)	N
1723	chr3	149205581	149205582	rs62272021	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	150,545 East Asian ancestry individuals	NA	3q25.1		rs62272021-A	0.044893	2E-15		0.0657173	[0.05-0.082] unit increase	Illumina [13478866] (imputed)	N
1723	chr3	149206618	149206619	rs77613638	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive disorder and major depressive episode treated with electroconvulsive therapy	1,796 European ancestry cases, 3,290 European ancestry controls	NA	3q25.1	NR	rs77613638-?	NR	1E-5		0.5751	[0.33-0.82]	Illumina [NR] (imputed)	N
1723	chr3	149210442	149210443	rs9857970	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	3q25.1	TM4SF4	rs9857970-?	NR	2E-20		0.03761	[0.03-0.046] unit increase novel	Illumina [6108953] (imputed)	N
1723	chr3	149211386	149211387	rs9843304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q25.1		rs9843304-T	NR	5E-9		0.0103	[0.0068-0.0138] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1723	chr3	149211386	149211387	rs9843304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q25.1		rs9843304-T	NR	2E-12		0.0141	[0.01-0.018] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
1723	chr3	149211386	149211387	rs9843304	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q25.1		rs9843304-T	NR	1E-28		0.0209	[0.017-0.025] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1723	chr3	149211386	149211387	rs9843304	27094239	Joshi AD	2016-04-16	Gastroenterology	Four Susceptibility Loci for Gallstone Disease Identified in a Meta-analysis of Genome-Wide Association Studies.	Gallstone disease	8,720 European ancestry cases,  55,152 European ancestry controls	6,489 European ancestry cases, 62,797 European ancestry controls, 1,499 African American cases, 9,145 African American controls, 1,056 Hispanic cases, 2,403 Hispanic controls	3q25.1	TM4SF4	rs9843304-C	0.45	3E-6	(EA)	1.11	[1.08-1.14]	Affymetrix, Illumina [at least 2305318] (imputed)	N
1723	chr3	149211511	149211512	rs12633863	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q25.1	TM4SF4	rs12633863-G	0.448302	3E-19		0.00460392	[0.0036-0.0056] unit decrease	Affymetrix [13995440] (imputed)	N
1723	chr3	149211511	149211512	rs12633863	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q25.1	TM4SF4	rs12633863-A	0.55	1E-10		6.42	z-score increase	Affymetrix [4311822] (imputed)	N
1723	chr3	149211511	149211512	rs12633863	30504769	Ferkingstad E	2018-11-30	Nat Commun	Genome-wide association meta-analysis yields 20 loci associated with gallstone disease.	Gallstone disease	27,174 European ancestry cases, 736,838 European ancestry controls	NA	3q25.1	TM4SF4	rs12633863-?		4E-30		1.11	[1.09-1.13]	Affymetrix, Illumina [43000000] (imputed)	N
1723	chr3	149211698	149211699	rs6774054	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	3q25.1	TM4SF4	rs6774054-A	0.3366	2E-8	(Japanese)	0.0238	[0.016-0.032] unit increase	Illumina [1986983] (imputed)	N
1723	chr3	149211698	149211699	rs6774054	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	3q25.1	TM4SF4	rs6774054-A	0.337	2E-8	(Japanese)	0.024	[0.016-0.032] unit increase	Illumina [5864938] (imputed)	N
1723	chr3	149212075	149212076	rs4681515	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholelithiasis	26,122 European ancestry cases, 461,431 European ancestry controls, 9,305 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	3q25.1		rs4681515-G	NR	9E-53		0.1251	[0.11-0.14] unit decrease	Affymetrix, Illumina [25844936] (imputed)	N
1723	chr3	149212075	149212076	rs4681515	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3q25.1	TM4SF4	rs4681515-?		3E-18		0.0345	[0.027-0.042] unit increase	Illumina [31500000] (imputed)	N
1723	chr3	149212081	149212082	rs11926459	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	3q25.1	TM4SF4	rs11926459-C	0.430969679782623	1E-13		0.034	[0.025-0.043] SD decrease	Illumina [22400000] (imputed)	N
1723	chr3	149212124	149212125	rs4681516	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	3q25.1		rs4681516-C	0.472532	3E-26		0.036795	[0.03-0.044] unit increase	Illumina [13476165] (imputed)	N
1723	chr3	149212267	149212268	rs62269283	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Alanine aminotransferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3q25.1	TM4SF4	rs62269283-?		3E-15		0.0757	[0.057-0.095] unit decrease	Illumina [31500000] (imputed)	N
1723	chr3	149212267	149212268	rs62269283	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Alanine transaminase levels	134,182 Japanese ancestry individuals	NA	3q25.1	TM4SF4	rs62269283-?	NR	5E-15		0.07279	[0.055-0.091] unit increase	Illumina [6108953] (imputed)	N
1723	chr3	149214183	149214184	rs73152651	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q25.1	TM4SF4	rs73152651-T	0.3227	1E-8	(East Asian)	0.0366	[0.024-0.049] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1723	chr3	149214542	149214543	rs60388273	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q25.1	TM4SF4	rs60388273-A	0.2282	3E-11		0.0295	[0.021-0.038] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1723	chr3	149214542	149214543	rs60388273	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3q25.1	NR	rs60388273-A	0.2586	1E-11	(men)	0.0446	[0.032-0.058] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1723	chr3	149216297	149216298	rs10935762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cholecystitis	9,820 European ancestry cases, 461,431 European ancestry controls, 1,860 East Asian ancestry cases, 168,253 East Asian ancestry controls	NA	3q25.1		rs10935762-T	NR	5E-14		0.1556	[0.12-0.2] unit decrease	Affymetrix, Illumina [25842273] (imputed)	N
1723	chr3	149220108	149220109	rs28502438	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	3q25.1	TM4SF4	rs28502438-T	0.57	7E-10		0.035	[0.023-0.047] unit increase	Affymetrix, Illumina [8048941] (imputed)	N
1723	chr3	149221562	149221563	rs28712435	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q25.1	NR	rs28712435-C	0.5483	6E-11		0.0254	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1723	chr3	149250588	149250589	rs17787940	23551011	Zhao L	2013-04-02	Ann Hum Genet	Genome-wide association study of pre-eclampsia detects novel maternal single nucleotide polymorphisms and copy-number variants in subsets of the Hyperglycemia and Adverse Pregnancy Outcome (HAPO) study cohort.	Preeclampsia	21 Afro-Caribbean cases, 1,010 Afro-Caribbean controls, 50 European ancestry cases, 1,202 European ancestry controls, 62 Hispanic cases, 658 Hispanic controls	NA	3q25.1	WWTR1	rs17787940-?	NR	3E-6	(EA)	3.17	[1.95-5.16]	Illumina [2485249] (imputed)	N
1723	chr3	149265236	149265237	rs2043549	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.1		rs2043549-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1724	chr3	149319872	149319873	rs144248326	32289280	Zhang Y	2020-04-11	Am J Obstet Gynecol	A genome-wide association study of polycystic ovary syndrome identified from electronic health records.	Polycystic ovary syndrome	1,735 European ancestry cases, 1,007 European, African American and unknown ancestry cases, 27,812 European ancestry controls, 23,626 European, African American and unknown ancestry controls	253 European ancestry cases, 2,161 European ancestry controls	3q25.1	WWTR1	rs144248326-C	0.0103	8E-7		2.13	[1.56-2.86]	NR [at least 5648769] (imputed)	N
1724	chr3	149361683	149361684	rs9836545	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q25.1	WWTR1	rs9836545-C	0.02	3E-7	(EA)	0.85	[0.52-1.18] unit increase	Illumina [up to 13042663] (imputed)	N
1724	chr3	149373630	149373631	rs59673549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q25.1		rs59673549-C	NR	6E-13		0.0168	[0.012-0.021] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1724	chr3	149373630	149373631	rs59673549	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q25.1		rs59673549-C	0.097395	8E-11		0.02199	[0.015-0.029] unit decrease	Illumina [13479295] (imputed)	N
1724	chr3	149374872	149374873	rs1055153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.1		rs1055153-?	NR	4E-10				NR [~ 8900000] (imputed)	N
1724	chr3	149374872	149374873	rs1055153	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	3q25.1	NR	rs1055153-?	NR	2E-8		6.04	[3.94-8.13] unit decrease	Illumina [552487]	N
1724	chr3	149375591	149375592	rs116959924	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q25.1	WWTR1	rs116959924-?	NR	1E-12		0.03448406	[0.025-0.044] unit decrease	Illumina [27896057] (imputed)	N
1724	chr3	149378069	149378070	rs4681533	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q25.1		rs4681533-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1725	chr3	149524691	149524692	rs6772704	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q25.1	ANKUB1	rs6772704-A	0.6846	9E-11		0.1236	[0.086-0.161] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1725	chr3	149537222	149537222	rs200110162	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3q25.1	ANKUB1, RNF13, PFN2	rs200110162-?	NR	1E-8		0.0388716	[0.026-0.052] unit increase	Affymetrix [25921788] (imputed)	N
1725	chr3	149543101	149543102	rs10935779	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q25.1		rs10935779-C	0.577	6E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
1725	chr3	149543101	149543102	rs10935779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.1	NR	rs10935779-T	0.415	4E-12		0.00758614	[0.0054-0.0097] unit decrease	NR [9732723] (imputed)	N
1725	chr3	149543101	149543102	rs10935779	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q25.1	NR	rs10935779-T	0.415	3E-8		0.014327183	[0.0093-0.0194] unit decrease	NR [~ 10000000] (imputed)	N
1726	chr3	149592910	149592911	rs41411047	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Myocardial infarction	2,563 Saudi Arab ancestry cases, 1,868 Saudi Arab ancestry controls	866 Saudi Arab ancestry cases, 371 Saudi Arab ancestry controls	3q25.1	RNF13	rs41411047-A	0.09	1E-11		1.51	[NR]	Affymetrix [537798]	N
1726	chr3	149629883	149629884	rs73157016	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 113)	19,670 European ancestry individuals	NA	3q25.1		rs73157016-?	NR	4E-8				NR [9705931] (imputed)	N
1727	chr3	149692596	149692597	rs1457546	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q25.1	NR	rs1457546-?	NR	2E-6		0.0083875	[0.005-0.0118] unit increase	Affymetrix [805426] (imputed)	N
1727	chr3	149722393	149722394	rs9289798	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.1	intergenic	rs9289798-G	0.6947	2E-9		0.1595	[0.11-0.21] mmHg decrease	Affymetrix [NR] (imputed)	N
1727	chr3	149781911	149781912	rs80017116	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3q25.1	LOC646903, TSC22D2	rs80017116-G	0.01	4E-7	(EA)	0.6283	[0.39-0.87] unit increase	Illumina [~ 9000000] (imputed)	N
1727	chr3	149781911	149781912	rs80017116	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	3q25.1	LOC646903, TSC22D2	rs80017116-G	0.01	4E-7		0.6271	[0.39-0.87] unit increase	Illumina [~ 9000000] (imputed)	N
1728	chr3	149856115	149856116	rs4681582	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Total cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	3q25.1	RP11-167H9.4	rs4681582-?	NR	1E-6		4.892	NR unit increase	Illumina [up to 1520000] (imputed)	N
1728	chr3	149923590	149923591	rs114035079	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC117386.2	rs114035079-?	NR	3E-10	(female)	0.5719	[NR] unit increase	Affymetrix [NR] (imputed)	N
1728	chr3	149943115	149943115	rs112717154	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise (MTAG)	51,574 European ancestry individuals	NA	3q25.1	TSC22D2	rs112717154-G	0.863	7E-9		0.052	[0.034-0.07] unit decrease	NR [~ 9000000] (imputed)	N
1728	chr3	149943115	149943115	rs112717154	31607149	Ramirez J	2019-10-14	Circ Arrhythm Electrophysiol	Cardiovascular Predictive Value and Genetic Basis of Ventricular Repolarization Dynamics.	T wave morphology restitution during recovery from exercise	51,574 European ancestry individuals	NA	3q25.1	TSC22D2	rs112717154-G	0.863	9E-9		0.041	[0.027-0.055] unit decrease	NR [~ 9000000] (imputed)	N
1729	chr3	149951017	149951018	rs11923657	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.1	TSC22D2	rs11923657-A	0.848926	6E-11	(14 ms)	0.0510691	[0.035-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1729	chr3	149951017	149951018	rs11923657	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.1	TSC22D2	rs11923657-A	0.848926	5E-8	(18 ms)	0.0425794	[0.027-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1729	chr3	149951017	149951018	rs11923657	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.1	TSC22D2	rs11923657-A	0.848926	5E-11	(12 ms)	0.0515995	[0.036-0.067] unit decrease	Affymetrix [10000000] (imputed)	N
1729	chr3	149951017	149951018	rs11923657	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.1	TSC22D2	rs11923657-A	0.848926	2E-9	(10 ms)	0.0476599	[0.032-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1729	chr3	149951017	149951018	rs11923657	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.1	TSC22D2	rs11923657-A	0.848926	1E-9	(16 ms)	0.0474314	[0.032-0.063] unit decrease	Affymetrix [10000000] (imputed)	N
1729	chr3	149994881	149994882	rs9834503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q25.1	NR	rs9834503-A	0.539353	2E-11		0.0058696	[0.0041-0.0076] unit increase	Affymetrix [16582909] (imputed)	N
1729	chr3	149994881	149994882	rs9834503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q25.1	NR	rs9834503-A	0.539659	2E-9		0.00799545	[0.0055-0.0105] unit increase	Affymetrix [16585854] (imputed)	N
1729	chr3	149994881	149994882	rs9834503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q25.1	NR	rs9834503-A	0.539353	6E-10		0.00600151	[0.0041-0.0079] unit increase	Affymetrix [16582965] (imputed)	N
1729	chr3	149994881	149994882	rs9834503	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q25.1	NR	rs9834503-A	0.539659	2E-7		0.00812062	[0.0052-0.011] unit increase	Affymetrix [16585866] (imputed)	N
1729	chr3	150001223	150001224	rs6414374	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	3q25.1	NR	rs6414374-?	NR	1E-12				Affymetrix, Illumina [6211246] (imputed)	N
1729	chr3	150002137	150002138	rs4681200	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	3q25.1	LINC01214	rs4681200-G	0.92	4E-19		0.072	NR unit increase	Illumina [9591901] (imputed)	N
1729	chr3	150002137	150002138	rs4681200	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	3q25.1	LINC01214	rs4681200-C	0.21	5E-90		0.029	unit increase	NR [NR]	N
1729	chr3	150004826	150004827	rs6440666	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q25.1	NR	rs6440666-T	0.783223	9E-11		0.014507	[0.01-0.019] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1729	chr3	150004849	150004850	rs6440667	31738745	Gibson J	2019-11-18	PLoS Genet	A meta-analysis of genome-wide association studies of epigenetic age acceleration.	Intrinsic epigenetic age acceleration	13,493 European ancestry individuals	NA	3q25.1	NR	rs6440667-C	0.1607	4E-9		0.4396	[0.29-0.59] unit increase	Illumina [5932107] (imputed)	N
1729	chr3	150018636	150018637	rs112551697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs112551697-A	NR	2E-14		0.0613317	[0.046-0.077] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150018636	150018637	rs112551697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs112551697-A	NR	2E-14		0.0613335	[0.046-0.077] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150018636	150018637	rs112551697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs112551697-A	NR	1E-9		0.050722	[0.034-0.067] unit decrease	Affymetrix [321788] (imputed)	N
1729	chr3	150018636	150018637	rs112551697	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs112551697-A	NR	2E-9		0.0476606	[0.032-0.063] unit decrease	Affymetrix [321016] (imputed)	N
1729	chr3	150018880	150018880	rs59633341	28346444	Wright DJ	2017-03-27	Nat Genet	Genetic variants associated with mosaic Y chromosome loss highlight cell cycle genes and overlap with cancer susceptibility.	Mosaic loss of chromosome Y (Y chromosome dosage)	67,034 European ancestry men	8,715 European ancestry men, 9,793 men	3q25.1	TSC22D2	rs59633341-A	0.16	4E-28		0.004	NR unit decrease	Affymetrix [at least 641018] (imputed)	N
1729	chr3	150042617	150042618	rs4301033	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3q25.1	TSC22D2	rs4301033-G	NR	6E-7		0.036	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1729	chr3	150047892	150047893	rs62271362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs62271362-G	NR	5E-10		0.064691	[0.044-0.085] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150047892	150047893	rs62271362	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs62271362-G	NR	4E-10		0.0648083	[0.044-0.085] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150052599	150052600	rs7651677	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs7651677-T	NR	2E-8		0.0200429	[0.013-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1729	chr3	150056727	150056728	rs62271368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs62271368-A	NR	6E-12		0.0332476	[0.024-0.043] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150056727	150056728	rs62271368	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.1	RP11-483E7.1	rs62271368-A	NR	4E-12		0.0335925	[0.024-0.043] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150059341	150059342	rs11710139	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	3q25.1	LOC107986141, LOC107986142	rs11710139-A	NR	5E-8		1.1111112	[1.06-1.15]	Affymetrix [up to 40000000] (imputed)	N
1729	chr3	150063453	150063454	rs73162480	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	3q25.1	TSC22D2	rs73162480-G	NR	2E-8		1.15	1.09-1.20	Affymetrix [at least 665500] (imputed)	N
1729	chr3	150065279	150065280	rs11710845	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3q25.1	LINC01214, TSC22D2	rs11710845-T	NR	4E-12		0.0586	unit decrease	Illumina [15409056] (imputed)	N
1729	chr3	150065279	150065280	rs11710845	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	3q25.1	TSC22D2	rs11710845-C	0.74	2E-7		1.11	NR	Affymetrix [at least 8002429] (imputed)	N
1729	chr3	150065279	150065280	rs11710845	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	3q25.1	LINC01214, TSC22D2	rs11710845-?	NR	7E-9		0.09	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q25.1		rs62271373-T	0.940057	1E-8		0.0479989	[0.032-0.064] unit decrease	NR [11722792] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q25.1		rs62271373-A	NR	2E-8		0.0244	[0.016-0.033] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting insulin	151,013 European ancestry individuals	NA	3q25.1	LINC01214	rs62271373-A	0.0607	2E-8		0.0256	[0.016-0.035] unit increase	Affymetrix, Illumina [32635793] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs62271373-A	NR	3E-27		0.0654372	[0.054-0.077] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs62271373-A	NR	2E-27		0.0657062	[0.054-0.078] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs62271373-A	NR	1E-21		0.0601749	[0.048-0.072] unit decrease	Affymetrix [321788] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	186,825 British ancestry men	NA	3q25.1	TSC22D2	rs62271373-A	NR	2E-8		0.038596	[0.025-0.052] unit decrease	Affymetrix [323858] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs62271373-A	NR	5E-24		0.0610111	[0.049-0.073] unit decrease	Affymetrix [321016] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q25.1	TSC22D2	rs62271373-A	NR	4E-8		0.0360956	[0.023-0.049] unit decrease	Affymetrix [323123] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs62271373-A	NR	5E-10		0.0381387	[0.026-0.05] unit increase	Affymetrix [321169] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	8E-25		0.043	mmol/L decrease	NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	5E-14		0.031	nmol/L increase	NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	8E-10				NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	4E-26		0.04	mmol/L increase	NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	2E-14		0.024	% increase	NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3q25.1		rs62271373-T	0.94	9E-7		0.022	U/L decrease	NR [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q25.1	NR	rs62271373-A	0.0601080000000001	2E-12		0.03361972	[0.024-0.043] unit increase	Affymetrix [93095623] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q25.1		rs62271373-A	0.060084	1E-11		0.0325127	[0.023-0.042] unit decrease	Affymetrix [93095623] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q25.1	NR	rs62271373-T	0.9442	4E-11		0.0685	[0.048-0.089] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q25.1	NR	rs62271373-T	0.946	1E-10		0.0645	[0.045-0.084] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q25.1	TSC22D2	rs62271373-T	0.940033	6E-23		0.0421729	[0.034-0.051] unit decrease	Affymetrix [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q25.1	TSC22D2	rs62271373-T	0.940027	2E-23		0.0407194	[0.033-0.049] unit increase	Affymetrix [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q25.1	TSC22D2	rs62271373-T	0.939995	1E-10		0.0272036	[0.019-0.035] unit increase	Affymetrix [NR] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q25.1	NR	rs62271373-T	0.940034	2E-24		0.0178848	[0.014-0.021] unit increase	Affymetrix [16582909] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q25.1	NR	rs62271373-T	0.939897	3E-25		0.0259913	[0.021-0.031] unit increase	Affymetrix [16585854] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q25.1	NR	rs62271373-T	0.940034	4E-16		0.0161697	[0.012-0.02] unit increase	Affymetrix [16582965] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q25.1	NR	rs62271373-T	0.939897	1E-14		0.0224479	[0.016-0.028] unit increase	Affymetrix [16585866] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q25.1	NR	rs62271373-?	NR	1E-21				Affymetrix [~ 8270000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q25.1	LINC01214	rs62271373-T	0.945568	6E-13		0.0284922	[0.021-0.036] unit decrease	NR [13737936] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q25.1		rs62271373-?	NR	4E-20				NR [~ 8900000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q25.1		rs62271373-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q25.1		rs62271373-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q25.1	TSC22D2	rs62271373-A	0.0553	1E-9		1.09	[1.06-1.12]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q25.1	NR	rs62271373-A	0.0578	3E-21		0.0408	[0.032-0.049] unit increase	NR [~ 27400000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q25.1	NR	rs62271373-A	0.0578	7E-14		0.032	[0.024-0.04] unit increase	NR [~ 27400000] (imputed)	N
1729	chr3	150066539	150066540	rs62271373	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.1		rs62271373-?	NR	6E-12		0.0291193	[0.02-0.038] unit decrease	Affymetrix [20259828] (imputed)	N
1729	chr3	150069725	150069726	rs35494336	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q25.1	Intergenic	rs35494336-A	0.5158	1E-8	(MTAG)	0.013	[0.0085-0.0175] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1729	chr3	150072152	150072153	rs7633948	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs7633948-T	NR	5E-10		0.0210234	[0.014-0.028] unit decrease	Affymetrix [321016] (imputed)	N
1729	chr3	150073702	150073703	rs7639816	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	3q25.1	TSC22D2	rs7639816-T	0.180878	1E-8		0.041868538	[0.027-0.056] unit increase	Affymetrix [7288503] (imputed)	N
1729	chr3	150073795	150073796	rs7617699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs7617699-G	NR	3E-12		0.0326146	[0.023-0.042] unit decrease	Affymetrix [321788] (imputed)	N
1729	chr3	150073795	150073796	rs7617699	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs7617699-G	NR	1E-12		0.0318314	[0.023-0.041] unit decrease	Affymetrix [321016] (imputed)	N
1729	chr3	150074250	150074251	rs11929253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs11929253-A	NR	4E-10		0.0229089	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150074250	150074251	rs11929253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs11929253-A	NR	2E-10		0.0232636	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
1729	chr3	150074250	150074251	rs11929253	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs11929253-A	NR	1E-10		0.0246398	[0.017-0.032] unit decrease	Affymetrix [321788] (imputed)	N
1730	chr3	150078234	150078235	rs75720263	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs75720263-T	NR	1E-8		0.018916	[0.012-0.025] unit decrease	Affymetrix [321016] (imputed)	N
1730	chr3	150087007	150087008	rs1012583	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.1	NR	rs1012583-G	0.702573039608367	4E-6	(IGP8)	0.1552	[0.089-0.221] unit increase	Illumina [~ 2500000] (imputed)	N
1730	chr3	150093444	150093445	rs12054166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q25.1		rs12054166-C	0.7399	2E-9		0.0096	[0.0065-0.0127] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1730	chr3	150093444	150093445	rs12054166	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q25.1	Intergenic	rs12054166-C	0.7399	2E-10	(MTAG)	0.0095	[0.0066-0.0124] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929243	5E-9		0.0449954	[0.03-0.06] unit decrease	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	4E-8		0.0429236	[0.028-0.058] unit decrease	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	2E-8		0.044119	[0.029-0.06] unit decrease	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929257	6E-9		0.0442958	[0.029-0.059] unit decrease	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	3E-9		0.0461047	[0.031-0.061] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	3E-8		0.0398019	[0.026-0.054] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	6E-9		0.0426358	[0.028-0.057] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	5E-9		0.0422837	[0.028-0.056] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	3E-8		0.0428824	[0.028-0.058] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	2E-8		0.0417529	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3q25.1		rs9844972-G	0.929237	9E-9		0.0414789	[0.027-0.056] unit increase	NR [11722792] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q25.1		rs9844972-C	NR	4E-9		0.1036	[0.069-0.138] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q25.1		rs9844972-C	NR	8E-20		0.0418	[0.033-0.051] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3q25.1		rs9844972-C	NR	8E-9		0.0701	[0.046-0.094] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	3q25.1		rs9844972-C	NR	4E-8		0.0617	[0.04-0.084] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q25.1		rs9844972-C	NR	5E-16		0.0365	[0.028-0.045] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3q25.1	NR	rs9844972-C	NR	6E-19		0.0424	[0.033-0.052] unit increase	Affymetrix [9000000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q25.1	NR	rs9844972-C	NR	9E-11		0.0325	[0.023-0.042] unit decrease	Affymetrix [9000000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q25.1	NR	rs9844972-C	NR	1E-15		0.04	[0.03-0.05] unit decrease	Affymetrix [9000000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q25.1	NR	rs9844972-C	0.071223	3E-9		0.026268901	[0.018-0.035] unit increase	Affymetrix [93095623] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q25.1	TSC22D2	rs9844972-?	NR	4E-15		0.0408	[0.032-0.05] unit increase	Affymetrix [5701386] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q25.1	NR	rs9844972-C	0.0707337	8E-10		0.0811724	[0.055-0.108] unit increase	Affymetrix [17914406] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3q25.1	TSC22D2	rs9844972-C	0.0671097	8E-9		0.07006084	[0.046-0.094] unit increase	Affymetrix [7288503] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q25.1		rs9844972-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q25.1		rs9844972-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q25.1	NR	rs9844972-C	0.07	5E-19		0.033	[0.026-0.04] unit increase	Affymetrix [2446094] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q25.1	NR	rs9844972-C	0.07	5E-8				Affymetrix [2446094] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q25.1	NA	rs9844972-C	0.0654	1E-14		0.0278	[0.021-0.035] unit increase	NR [~ 27400000] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q25.1	LOC107986143, TSC22D2	rs9844972-C	0.0697229176154775	1E-10		0.0956	[0.067-0.125] unit increase	NR [5035015] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.1	LOC646903, TSC22D2	rs9844972-G		9E-9		0.441	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1730	chr3	150097634	150097635	rs9844972	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.1	LOC646903, TSC22D2	rs9844972-G		7E-9		0.296	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1730	chr3	150104444	150104445	rs9881867	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	3q25.1		rs9881867-?	NR	1E-9				NR [9705931] (imputed)	N
1730	chr3	150112040	150112041	rs7430585	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q25.1		rs7430585-G	0.26	4E-36		12.55	z score increase	Affymetrix [9061022] (imputed)	N
1730	chr3	150112040	150112041	rs7430585	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q25.1		rs7430585-G	0.26	5E-8		5.45	z score increase	Affymetrix [9061022] (imputed)	N
1730	chr3	150128391	150128392	rs879634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.1	NR	rs879634-G	0.729438	5E-14				Affymetrix, Illumina [17210439] (imputed)	N
1730	chr3	150128391	150128392	rs879634	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q25.1	NR	rs879634-A	0.2578	8E-6		0.289	mmHg increase	Illumina [242296]	N
1730	chr3	150134730	150134731	rs79279252	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q25.1	TSC22D2	rs79279252-A	NR	2E-8		0.0739231	[0.048-0.1] unit decrease	Affymetrix [321016] (imputed)	N
1730	chr3	150135185	150135186	rs2167177	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q25.1	TSC22D2	rs2167177-?		4E-11				NR [7428630] (imputed)	N
1730	chr3	150142259	150142260	rs2278806	30535121	Gao XR	2018-12-07	Hum Mol Genet	Genome-wide association analyses identify 139 loci associated with macular thickness in the UK Biobank cohort.	Macular thickness	59,814 European ancestry individuals	8,609 European ancestry individuals	3q25.1	TSC22D2	rs2278806-?	NR	2E-8		0.817	[0.54-1.09] unit decrease	Affymetrix [11100000] (imputed)	N
1730	chr3	150146398	150146399	rs34717889	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q25.1	TSC22D2	rs34717889-T	0.802871	4E-9		0.0144811	[0.0097-0.0193] unit decrease	Affymetrix [NR] (imputed)	N
1730	chr3	150167143	150167144	rs2903834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q25.1		rs2903834-A	NR	2E-8		0.0093	[0.006-0.0126] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1730	chr3	150169854	150169855	rs6763024	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q25.1	TSC22D2	rs6763024-C	0.271263	2E-13		0.018380674	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1730	chr3	150169854	150169855	rs6763024	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q25.1	NR	rs6763024-T	0.728284	4E-15		0.016829	[0.013-0.021] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1730	chr3	150169854	150169855	rs6763024	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	3q25.1	NR	rs6763024-C	0.27	9E-6		1.41	[1.21-1.63]	Illumina [5216266] (imputed)	N
1730	chr3	150174657	150174658	rs41267883	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q25.1	TSC22D2, IGSF10	rs41267883-?		1E-10				Affymetrix, Illumina [NR] (imputed)	N
1730	chr3	150176904	150176906	rs201481721	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q25.1	TSC22D2	rs201481721-D	0.03	2E-9		1.32	[0.89-1.75] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1730	chr3	150176904	150176906	rs201481721	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q25.1	TSC22D2	rs201481721-D	0.0334	1E-8		1.3068	[0.86-1.76] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1730	chr3	150178262	150178266	rs199842413	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q25.1	NR	rs199842413-C		3E-7		0.3216	[0.2-0.44] SD units decrease	NR [10700000] (imputed)	N
1730	chr3	150178938	150178939	rs16862676	29273593	Duan L	2017-12-22	Stroke	Novel Susceptibility Loci for Moyamoya Disease Revealed by a Genome-Wide Association Study.	Moyamoya disease	755 Han Chinese ancestry cases, 2,031 Han Chinese ancestry controls	724 Han Chinese ancestry cases, 3,043 Han Chinese ancestry controls	3q25.1	TSC22D2	rs16862676-A	0.39	2E-9		1.29	[NR]	Illumina [747089]	N
1730	chr3	150185744	150185745	rs1450344	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q25.1		rs1450344-G	0.4	1E-8		5.68	z score increase	Affymetrix [9061022] (imputed)	N
1730	chr3	150187313	150187314	rs1868673	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	3q25.1	TSC22D2	rs1868673-C	0.48	1E-8	(East Asian)	0.044	[0.028-0.06] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1730	chr3	150187313	150187314	rs1868673	26785701	Wen W	2016-01-20	Sci Rep	Genome-wide association studies in East Asians identify new loci for waist-hip ratio and waist circumference.	Waist circumference	up to 44,609 East Asian individuals	up to 25,553 East Asian individuals, up to 230,044 individuals	3q25.1	TSC22D2	rs1868673-C	0.47969966563601063	2E-6	(East Asian women)	0.04278	[0.025-0.061] unit increase	Affymetrix, Illumina [at least 1850000] (imputed)	N
1730	chr3	150194350	150194351	rs1584586	35115690	Lopera-Maya EA	2022-02-03	Nat Genet	Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project.	Gut bacterial pathway abundance (PWY.841..superpathway.of.purine.nucleotides.de.novo.biosynthesis.I)	7,738 European ancestry individuals	NA	3q25.1		rs1584586-G	0.653334194882399	3E-8		0.09208915	[0.059-0.125] unit increase	Illumina [5584686] (imputed)	N
1730	chr3	150201784	150201785	rs35408555	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q25.1	intergenic	rs35408555-A	0.7718	2E-9		0.0136	[0.0091-0.0181] unit increase	Affymetrix [18391927] (imputed)	N
1731	chr3	150212582	150212583	rs35576002	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (English)	5,983 European ancestry adolescents	NA	3q25.1	SERP1	rs35576002-G	NR	5E-6		0.083	[0.048-0.118] unit decrease	Illumina [6319684] (imputed)	N
1731	chr3	150320321	150320322	rs2204113	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.1	EIF2A	rs2204113-?	NR	6E-6	(leucine)	0.15407622	[0.087-0.221] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1732	chr3	150364363	150364364	rs9851822	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	B cell lymphocyte profile difference (90 days post influenza vaccination)	298 individuals	NA	3q25.1	NR	rs9851822-?	NR	5E-8			[NR]	NR [1665663]	N
1732	chr3	150406840	150406841	rs184093779	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3q25.1	FAM194A	rs184093779-T	NR	8E-6		1.332	[0.75-1.92] unit increase	Illumina [13520550] (imputed)	N
1732	chr3	150438049	150438050	rs59885616	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	17,389 European ancestry cases, 240,341 European ancestry controls, 6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	3q25.1		rs59885616-T	NR	4E-14		0.1446	[0.11-0.18] unit decrease	Affymetrix, Illumina [25794640] (imputed)	N
1732	chr3	150439773	150439774	rs2869476	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	3q25.1	NR	rs2869476-?	NR	9E-6		0.1572	[0.089-0.226] unit decrease	Illumina [at least 560000] (imputed)	N
1732	chr3	150444881	150444882	rs114179581	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.1	NR	rs114179581-G	0.01045	8E-14	(CTH)	1.614	NR unit increase	Illumina [1671387] (imputed)	N
1732	chr3	150447678	150447679	rs524772	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q25.1		rs524772-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1732	chr3	150452544	150452545	rs1520818	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	3q25.1	Intergenic	rs1520818-C	0.12	4E-6	(recessive)	0.36	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
1732	chr3	150464270	150464271	rs73006998	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls			rs73006998-A	0.22	1E-10		0.93	[0.9-0.95]	Affymetrix, Illumina [NR] (imputed)	N
1732	chr3	150467807	150467808	rs6788895	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	3q25.1	SIAH2	rs6788895-G	0.6	2E-6		1.23	[NR]	Affymetrix, Illumina [3378933] (imputed)	N
1732	chr3	150467807	150467808	rs6788895	22951594	Elgazzar S	2012-09-06	J Hum Genet	A genome-wide association study identifies a genetic variant in the SIAH2 locus associated with hormonal receptor-positive breast cancer in Japanese.	Breast cancer	1,086 Japanese ancestry cases, 1,816 Japanese ancestry controls	1,653 Japanese ancestry cases, 2,797 Japanese ancestry controls	3q25.1	SIAH2	rs6788895-G	0.65	9E-8		1.22	[1.13-1.31]	Illumina [453627]	N
1733	chr3	150472389	150472390	rs2120596	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Breast cancer	6,325 East Asian ancestry cases, 73,225 East Asian ancestry controls	NA	3q25.1		rs2120596-A	0.332069863	8E-14		0.15327482	[0.11-0.19] unit decrease	Illumina [13401000] (imputed)	N
1733	chr3	150473605	150473606	rs60538652	30323354	Lee JY	2018-10-15	Sci Rep	BRCA1/2-negative, high-risk breast cancers (BRCAX) for Asian women: genetic susceptibility loci and their potential impacts.	BRCA1/2-negative high-risk breast cancer	1,469 Korean ancestry cases, 5,979 Korean ancestry controls	NA	3q25.1	SIAH2	rs60538652-A	0.65	6E-7		1.26	[1.15-1.38]	Affymetrix, Illumina [3378933] (imputed)	N
1733	chr3	150479815	150479816	rs1838337	31757997	Low SK	2019-11-22	Sci Rep	Identification of two novel breast cancer loci through large-scale genome-wide association study in the Japanese population.	Breast cancer	6,669 Japanese ancestry cases, 21,930 Japanese ancestry controls	981 Japanese ancestry cases, 1,394 Japanese ancestry controls	3q25.1	SIAH2	rs1838337-G	0.627	1E-8		1.128	[1.082-1.176]	Illumina [4946503] (imputed)	N
1733	chr3	150480100	150480100	rs146383533	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Breast cancer	5,552 Japanese ancestry cases, 89,731 Japanese ancestry controls	NA	3q25.1		rs146383533-TTTTC	0.349384138	1E-11		0.86398584	[0.828337909-0.901167893]	Illumina [8919992] (imputed)	N
1734	chr3	150657839	150657840	rs4680068	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Non-alcoholic fatty liver disease activity score in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	3q25.1	CLRN1	rs4680068-C	0.051064	3E-6		1.567	[0.92-2.21] unit increase	NR [7263501] (imputed)	N
1734	chr3	150697207	150697208	rs16863118	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.1	NR	rs16863118-C	0.836539205162439	8E-6	(IGP8)	0.1835	[0.1-0.26] unit increase	Illumina [~ 2500000] (imputed)	N
1734	chr3	150697207	150697208	rs16863118	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.1	NR	rs16863118-C	0.836539205162439	7E-7	(IGP48)	0.2044	[0.12-0.29] unit increase	Illumina [~ 2500000] (imputed)	N
1734	chr3	150707914	150707915	rs7652649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q25.1		rs7652649-T	NR	3E-10		0.0144	[0.0099-0.0189] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1734	chr3	150707914	150707915	rs7652649	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q25.1	CLRN1-AS1, RP11-166N6.2	rs7652649-T	0.586186	2E-9		0.014397363	[0.0097-0.0191] unit increase	Affymetrix [93095623] (imputed)	N
1734	chr3	150707914	150707915	rs7652649	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q25.1	NR	rs7652649-T	0.584534	2E-11		0.013935	[0.0099-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1734	chr3	150707914	150707915	rs7652649	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q25.1		rs7652649-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1735	chr3	150739173	150739174	rs77553487	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3q25.1	NR	rs77553487-?	NR	1E-9		6.113	NR z score increase	Illumina [at least 830937] (imputed)	N
1735	chr3	150776599	150776600	rs358959	33706416	Slob EMA	2021-03-11	Pediatr Allergy Immunol	Genome-wide association studies of exacerbations in children using long-acting beta2-agonists.	Childhood asthma exacerbations in long-acting beta2-agonist treatment	642 European, Hispanic, African, Asian or unknown ancestry cases, 783 European, Hispanic, African, Asian or unknown ancestry controls	NA	3q25.1	CLRN1	rs358959-G	0.257	5E-6		0.63	[0.52-0.77]	Affymetrix, Illumina [82996] (imputed)	N
1735	chr3	150788031	150788032	rs7649164	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q25.1	CLRN1, MED12L	rs7649164-T	0.5745	6E-9		1.0213242		Affymetrix [11880941] (imputed)	N
1735	chr3	150805176	150805177	rs114050142	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.1	NR	rs114050142-A	0.0567	5E-12		0.0172834	[0.012-0.022] unit decrease	NR [9732723] (imputed)	N
1735	chr3	150818074	150818075	rs2116290	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q25.1	NA	rs2116290-A	0.3563	9E-10	(Female)	1.049	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1736	chr3	150880907	150880908	rs3116549	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	5,108 European ancestry individuals (unimpaired cognition, mild cognitive impairment or Alzheimer's disease)	NA	3q25.1	NR	rs3116549-?	0.2294	3E-7		0.045792	[0.028-0.063] unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1736	chr3	150935370	150935371	rs1554120	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	3q25.1	MED12L	rs1554120-A	0.85	5E-6	(Right HG thickness)	0.0296	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
1736	chr3	150941491	150941492	rs4680250	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q25.1	P2RY14, MED12L	rs4680250-G	0.694016	1E-9		0.014804706	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1736	chr3	150941491	150941492	rs4680250	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q25.1	NR	rs4680250-G	0.692997	5E-13		0.015734	[0.011-0.02] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1736	chr3	150941491	150941492	rs4680250	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q25.1		rs4680250-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1736	chr3	150943538	150943539	rs9289834	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q25.1		rs9289834-T	NR	2E-11		0.0118	[0.0083-0.0153] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1736	chr3	150943538	150943539	rs9289834	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.1	NR	rs9289834-T	0.657302	7E-11				Affymetrix, Illumina [19872809] (imputed)	N
1736	chr3	150979473	150979488	rs144929047	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q25.1		rs144929047-G	NR	2E-10		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1736	chr3	150990509	150990510	rs6440732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q25.1	P2RY14, MED12L	rs6440732-A	0.825365	2E-15		0.023143217	[0.017-0.029] unit increase	Affymetrix [93095623] (imputed)	N
1736	chr3	150990509	150990510	rs6440732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.1	NR	rs6440732-A	0.832934	2E-19				Affymetrix, Illumina [24649327] (imputed)	N
1736	chr3	150990509	150990510	rs6440732	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q25.1	NR	rs6440732-A	0.827718	1E-21		0.023275	[0.018-0.028] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1737	chr3	151008121	151008122	rs10708332	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q25.1	MED12L	rs10708332-C	0.775466	3E-22		0.025771879	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1737	chr3	151028997	151028998	rs1463727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q25.1		rs1463727-A	NR	2E-17		0.0207	[0.016-0.025] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1737	chr3	151028997	151028998	rs1463727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.1	NR	rs1463727-A	0.768888	5E-24				Affymetrix, Illumina [23472807] (imputed)	N
1737	chr3	151042463	151042464	rs12107539	24023788	Ong BA	2013-09-02	PLoS One	Gene network analysis in a pediatric cohort identifies novel lung function genes.	Lung function (forced expiratory flow during mid-portion (25% and 75%) of forced vital capacity)	1,015 European ancestry individuals, 541 African American individuals	NA	3q25.1	NR	rs12107539-?		4E-6	(AA)			Illumina [up to 524000]	N
1737	chr3	151046307	151046308	rs1466684	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q25.1	NR	rs1466684-A	0.823956	2E-10		0.015539	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1737	chr3	151073354	151073355	rs1352887	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3q25.1		rs1352887-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1737	chr3	151073354	151073355	rs1352887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q25.1		rs1352887-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1737	chr3	151078215	151078216	rs9856118	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3q25.1	P2RY12, P2RY14	rs9856118-G	0.167201966786287	9E-11		0.0046717	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1737	chr3	151108964	151108965	rs11707416	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3q25.1	MED12L	rs11707416-A	0.3672	1E-10		0.0627	[0.044-0.082] unit decrease	NR [7784415] (imputed)	N
1737	chr3	151114596	151114597	rs76553065	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q25.1		rs76553065-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1737	chr3	151114851	151114852	rs67886110	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Epstein-Barr virus EBNA-1 antibody levels	7,972 White British ancestry individuals	NA	3q25.1	MED12L	rs67886110-G	0.599	2E-8		0.09	[0.059-0.121] unit increase	NR [25472218] (imputed)	N
1737	chr3	151119725	151119726	rs11708767	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with no specific cognitive domain impairment	Up to 1,584 European ancestry cases, 3,447 European ancestry controls	NA	3q25.1	NR	rs11708767-A	0.43	3E-7		1.33	[1.21-1.45]	NR [up to 6398204] (imputed)	N
1738	chr3	151131221	151131222	rs2276765	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3q25.1	MED12L	rs2276765-A		2E-7		0.0761	[0.047-0.105] unit increase	Illumina [NR]	N
1738	chr3	151133815	151133816	rs3821665	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3q25.1		rs3821665-A	NR	1E-5		1.03417		Affymetrix, Illumina [62056310] (imputed)	N
1738	chr3	151141058	151141059	rs79417519	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	3q25.1	MED12L	rs79417519-A	0.0437	8E-6		0.1528	[0.086-0.22] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1738	chr3	151143843	151143844	rs73869064	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q25.1	NR	rs73869064-?	NR	5E-7		0.3537	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1738	chr3	151143843	151143844	rs73869064	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q25.1	NR	rs73869064-?	NR	3E-6	(AA)	0.3879	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1738	chr3	151183070	151183071	rs1491976	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	3q25.1	NR	rs1491976-G	NR	5E-6	(phenotype 1)	2.3255813	[NR]	Illumina [> 8000000] (imputed)	N
1738	chr3	151183070	151183071	rs1491976	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	3q25.1	NR	rs1491976-G	NR	5E-6	(phenotype 3)	2.33	[NR]	Illumina [> 8000000] (imputed)	N
1740	chr3	151389204	151389204	rs35548982	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	3q25.1	MIR548H2	rs35548982-GT	0.918	3E-6		1.96	[1.45-2.66]	Affymetrix [up to 27494467] (imputed)	N
1740	chr3	151422580	151422581	rs9834244	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	3q25.1	AADACL2	rs9834244-?	0.09	8E-7		1.6949153	[1.37-2.7]	Illumina [6220060] (imputed)	N
1740	chr3	151509743	151509744	rs9289856	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	3q25.1	NR	rs9289856-C	0.0283	9E-6		0.3856	[0.22-0.55] unit increase	Illumina [7305641] (imputed)	N
1741	chr3	151579872	151579873	rs6798928	20694011	Ferreira RC	2010-08-08	Nat Genet	Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.	Immunoglobulin A	430 European ancestry cases, 1,090 European ancestry controls	342 European ancestry cases, 886 European ancestry controls	3q25.1	AADAC, SUCNR1	rs6798928-?	0.58	3E-6		1.35	[1.19-1.54]	Illumina [2057134] (imputed)	N
1741	chr3	151584293	151584294	rs11708673	34340725	Campos AI	2021-08-03	Twin Res Hum Genet	Genetic Susceptibility to Pneumonia: A GWAS Meta-Analysis Between the UK Biobank and FinnGen.	Pneumonia	24,760 European ancestry cases, 525,615 European ancestry controls	NA	3q25.1		rs11708673-A	NR	6E-8		0.014	[0.01-0.018] unit decrease	NR [7831927]	N
1741	chr3	151602789	151602790	rs1472485104	33574277	Kawai Y	2021-02-11	NPJ Genom Med	Mapping of susceptible variants for cold medicine-related Stevens-Johnson syndrome by whole-genome resequencing.	Cold medicine-related Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) with severe ocular complications	133 Japanese ancestry cases, 418 Japanese ancestry controls	NA	3q25.1		rs1472485104-C	0.03008	2E-7		0.1764		Illumina [7608150]	N
1741	chr3	151624628	151624629	rs3107329	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	3q25.1	SUCNR1	rs3107329-A		1E-6		1.32	[1.18-1.48]	Illumina [569200]	N
1741	chr3	151639764	151639765	rs7648585	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q25.1	NR	rs7648585-G	NR	5E-12		0.04	NR unit increase	NR [NR] (imputed)	N
1742	chr3	151653367	151653368	rs4679955	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q25.1	NR	rs4679955-T	NR	6E-14		0.05	NR unit increase	NR [NR] (imputed)	N
1742	chr3	151654861	151654862	rs4679956	28272467	Heilmann-Heimbach S	2017-03-08	Nat Commun	Meta-analysis identifies novel risk loci and yields systematic insights into the biology of male-pattern baldness.	Male-pattern baldness	10,846 European ancestry cases, 11,672 European ancestry controls	NA	3q25.1		rs4679956-T	0.41	2E-18		0.18	[0.14-0.22] unit increase	Affymetrix, Illumina [8004650] (imputed)	N
1742	chr3	151654861	151654862	rs4679956	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q25.1	NR	rs4679956-T	NR	6E-14		0.05	NR unit increase	NR [NR] (imputed)	N
1742	chr3	151654861	151654862	rs4679956	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Male-pattern baldness	9,009 European ancestry cases, 8,491 European ancestry controls	NA	3q25.1	SUCNR1, MBNL1	rs4679956-?	NR	5E-19		1.223	[1.170-1.279]	Illumina [13436641] (imputed)	N
1742	chr3	151656535	151656536	rs73168962	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q25.1		rs73168962-?	NR	4E-74				NR [~ 8900000] (imputed)	N
1742	chr3	151657768	151657769	rs13060333	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q25.1	AADAC, SUCNR1	rs13060333-A	NR	3E-15		0.0505326	NR unit increase	NR [NR] (imputed)	N
1742	chr3	151658412	151658413	rs56188194	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q25.1	NR	rs56188194-G	0.281343	6E-75		0.0644634	[0.058-0.071] unit increase	NR [19129689] (imputed)	N
1742	chr3	151674476	151674477	rs16863765	29146897	Pirastu N	2017-11-17	Nat Commun	GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk.	Male-pattern baldness	25,662 British ancestry cases, 17,928 British ancestry controls	13,367 European ancestry cases, 11,851 European ancestry controls, 3,436 cases, 2,435 controls	3q25.1	AADAC	rs16863765-G	NR	8E-18		0.133406	[0.1-0.16] unit increase	Affymetrix [27512692] (imputed)	N
1742	chr3	151676321	151676322	rs2723362	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	3q25.1	NR	rs2723362-C	NR	7E-6		1.081081	[1.04-1.12]	Illumina [6774630] (imputed)	N
1742	chr3	151731716	151731717	rs1987989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q25.1		rs1987989-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1742	chr3	151740971	151740972	rs35894886	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q25.1	NR	rs35894886-C	0.198068	3E-28		0.0432845	[0.036-0.051] unit decrease	NR [19129689] (imputed)	N
1742	chr3	151754767	151754768	rs1842202	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q25.1	AADAC, AADACL2, SUCNR1	rs1842202-G	NR	1E-10		0.0456419	NR unit decrease	NR [NR] (imputed)	N
1742	chr3	151763700	151763701	rs1351267	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	3q25.1	intergenic	rs1351267-?	NR	7E-6	(Mood symptoms)	0.0882	[NR] unit increase	Affymetrix [696491]	N
1743	chr3	151815151	151815152	rs13078008	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium saudiense abundance in stool	5,959 Finnish ancestry individuals	NA	3q25.1		rs13078008-A	0.22169	4E-8		0.103692	[0.067-0.141] unit decrease	Illumina [7980478] (imputed)	N
1743	chr3	151817291	151817292	rs62272679	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q25.1		rs62272679-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1743	chr3	151830308	151830309	rs11712066	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3q25.1	NR	rs11712066-A	0.760041453331213	3E-27	(EA)	1.5625	[1.39-1.82]	Illumina [6576307] (imputed)	N
1743	chr3	151830308	151830309	rs11712066	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3q25.1	NR	rs11712066-A	0.760041453331213	3E-27		1.5625	[1.39-1.82]	Illumina [6576307] (imputed)	N
1743	chr3	151830308	151830309	rs11712066	23989729	Feenstra B	2013-08-21	JAMA	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls	3q25.1	intergenic	rs11712066-A	0.7484	3E-21		1.55	[1.42-1.70]	Illumina [9737928] (imputed)	N
1743	chr3	151830308	151830309	rs11712066	22306654	Feenstra B	2012-02-05	Nat Genet	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	3q25.1	MBNL1	rs11712066-A	0.75	2E-17		1.61	[1.44-1.79]	Illumina [523420]	N
1743	chr3	151853239	151853240	rs115600761	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q25.1		rs115600761-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1743	chr3	151854114	151854115	rs188981	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in cancer or chronic obstructive pulmonary disease	1,085 cancer cases, 237 COPD cases	NA	3q25.1	LOC401093	rs188981-?		7E-6		0.025	unit decrease	Affymetrix [418365]	N
1743	chr3	151864842	151864843	rs325729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q25.1		rs325729-T	NR	9E-9		0.0176	[0.012-0.024] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1743	chr3	151899703	151899704	rs161792	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	3q25.1		rs161792-A	0.6418	2E-8		0.12286842	[0.08-0.166] mmHg increase	Affymetrix, Illumina [247314] (imputed)	N
1743	chr3	151899703	151899704	rs161792	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q25.1		rs161792-A	0.6315	4E-11		0.1044232	[0.072-0.137] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1743	chr3	151900672	151900673	rs325712	30531825	Morgan MD	2018-12-10	Nat Commun	Genome-wide study of hair colour in UK Biobank explains most of the SNP heritability.	Blond vs. brown/black hair color	39,397 British ancestry blond hair individuals, 283,920 British ancestry brown or black hair individuals	NA	3q25.1	MBNL1	rs325712-C	0.3657	2E-9		1.049	NR	Affymetrix [9154080] (imputed)	N
1743	chr3	151904189	151904190	rs323610	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q25.1		rs323610-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1744	chr3	151918420	151918421	rs34614995	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q25.1		rs34614995-T	NR	2E-9		0.0175	[0.012-0.023] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
1744	chr3	151918420	151918421	rs34614995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.1	NR	rs34614995-T	0.14309	1E-11				Affymetrix, Illumina [24332387] (imputed)	N
1744	chr3	151918420	151918421	rs34614995	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q25.1	NR	rs34614995-T	0.113236	6E-12		0.020194	[0.014-0.026] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1744	chr3	151918420	151918421	rs34614995	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q25.1		rs34614995-?	NR	8E-9				NR [~ 8900000] (imputed)	N
1744	chr3	151921373	151921374	rs325798	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q25.1		rs325798-G	NR	2E-9		0.0105	[0.0072-0.0138] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1744	chr3	151930969	151930970	rs323627	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q25.1		rs323627-C	NR	1E-11		0.0102	[0.0073-0.0131] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1744	chr3	151936017	151936018	rs323620	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.1		rs323620-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1744	chr3	151945924	151945925	rs75853696	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	3q25.1	NR	rs75853696-G	NR	3E-6		1.3020833	[1.16-1.45]	Illumina [6774630] (imputed)	N
1744	chr3	151952676	151952677	rs76719045	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q25.1		rs76719045-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1744	chr3	151975813	151975814	rs146975914	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.1	intergenic	rs146975914-T	0.9847	5E-9		0.5583	[0.37-0.75] mmHg decrease	Affymetrix [NR] (imputed)	N
1744	chr3	151976548	151976549	rs73154149	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q25.1	NR	rs73154149-G	0.324238	8E-12		0.013577	[0.0097-0.0175] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1744	chr3	151976552	151976553	rs370612	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q25.1	NR	rs370612-T	0.657468	3E-11		0.013493	[0.0095-0.0175] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1744	chr3	151979988	151979989	rs842050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q25.1		rs842050-G	NR	4E-10		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1744	chr3	151979988	151979989	rs842050	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q25.1		rs842050-G	NR	5E-11		0.0114	[0.0081-0.0147] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1744	chr3	151983260	151983261	rs391173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q25.1	MBNL1-AS1	rs391173-C	0.657741	1E-11		0.01579027	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1744	chr3	151983260	151983261	rs391173	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q25.1	MBNL1-AS1	rs391173-C	0.657759	4E-10		0.014534246	[0.01-0.0191] unit decrease	Affymetrix [93095623] (imputed)	N
1744	chr3	151987926	151987927	rs2217083	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q25.1		rs2217083-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1744	chr3	151989828	151989828	rs139763690	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q25.1	NR	rs139763690-T	0.653046	1E-10		0.00928587	[0.0065-0.012] unit increase	Affymetrix [16578495] (imputed)	N
1744	chr3	151990778	151990779	rs35650976	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q25.1	MBNL1	rs35650976-C	0.699775	3E-12		0.0150252	[0.011-0.019] unit decrease	Affymetrix [NR] (imputed)	N
1744	chr3	151990778	151990779	rs35650976	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q25.1	NR	rs35650976-C	0.699854	5E-8		0.0121862	[0.0078-0.0166] unit increase	NR [NR]	N
1744	chr3	151994173	151994174	rs13072540	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q25.1		rs13072540-C	NR	1E-9		0.0117	[0.008-0.0154] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1744	chr3	151997830	151997831	rs113873241	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	3q25.1	NR	rs113873241-?		2E-6		37.1242	[21.88-52.37] unit decrease	NR [NR] (imputed)	N
1744	chr3	152004201	152004202	rs182314334	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q25.1	MBNL1	rs182314334-T	0.9	4E-11		1.09	[1.06-1.12]	Illumina [20370935] (imputed)	N
1744	chr3	152010141	152010142	rs76360965	33290408	Ray D	2020-12-08	PLoS Genet	A powerful method for pleiotropic analysis under composite null hypothesis identifies novel shared loci between Type 2 Diabetes and Prostate Cancer.	Type 2 diabetes or prostate cancer (pleiotropy)	62,892 European ancestry T2D cases, 79,194 European ancestry PrCa cases, 659,536 European ancestry controls	NA	3q25.1	MBNL1	rs76360965-?		2E-12				Illumina [5041948] (imputed)	N
1744	chr3	152011745	152011745	rs145053401	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q25.1	NR	rs145053401-C	NR	9E-13		1.087	[1.06-1.11]	Affymetrix, Illumina [29235255] (imputed)	N
1744	chr3	152013013	152013014	rs13093352	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q25.1	NR	rs13093352-G	0.231727	3E-15		0.0290976	[0.022-0.036] unit decrease	NR [19129689] (imputed)	N
1744	chr3	152018101	152018102	rs74497536	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q25.2		rs74497536-A	NR	2E-8		0.0449	[0.029-0.061] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
1744	chr3	152018101	152018102	rs74497536	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q25.2	MBNL1	rs74497536-A	0.0232	2E-9		0.0383	[0.026-0.051] unit increase	Affymetrix [18391927] (imputed)	N
1744	chr3	152018101	152018102	rs74497536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q25.2	MBNL1	rs74497536-A	0.023271	6E-10		0.045904446	[0.031-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1744	chr3	152018101	152018102	rs74497536	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q25.2		rs74497536-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1744	chr3	152022889	152022890	rs6784925	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q25.2	MBNL1	rs6784925-C	0.45125	4E-9		0.0108875	[0.0073-0.0145] unit increase	NR [13737936] (imputed)	N
1744	chr3	152035636	152035637	rs7610095	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q25.2	MBNL1	rs7610095-G	0.548086	4E-11		0.00250038	[0.0017-0.0033] unit increase	Affymetrix [13995440] (imputed)	N
1744	chr3	152035636	152035637	rs7610095	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q25.2	NR	rs7610095-A	NR	9E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix [9000000] (imputed)	N
1744	chr3	152035636	152035637	rs7610095	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	3q25.2	NR	rs7610095-G	0.548475	2E-15		0.0160018	[0.012-0.02] unit increase	Affymetrix [16583148] (imputed)	N
1745	chr3	152053249	152053250	rs4472028	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q25.2	MBNL1	rs4472028-T	0.444249850706694	2E-10		0.0453	[0.031-0.059] unit increase	NR [5035015] (imputed)	N
1745	chr3	152073054	152073055	rs3920075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q25.2		rs3920075-C	NR	5E-10		0.0131	[0.009-0.0172] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1745	chr3	152074048	152074051	rs145686115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q25.2		rs145686115-C	NR	1E-10		0.0142	[0.0099-0.0185] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1745	chr3	152084242	152084243	rs7633673	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q25.2	NR	rs7633673-G	0.5904	8E-16		0.0306	[0.023-0.038] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1745	chr3	152084242	152084243	rs7633673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3q25.2	NR	rs7633673-G	0.593857	8E-20		0.0255585	[0.02-0.031] unit increase	Affymetrix [16580851] (imputed)	N
1745	chr3	152084242	152084243	rs7633673	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3q25.2	NR	rs7633673-G	0.59422	3E-13		0.018352	[0.013-0.023] unit increase	Affymetrix [16585745] (imputed)	N
1745	chr3	152084242	152084243	rs7633673	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q25.2	NR	rs7633673-A	0.413153573431517	4E-8		0.005116514	[0.0033-0.0069] unit decrease	NR [NR]	N
1745	chr3	152084242	152084243	rs7633673	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q25.2	NR	rs7633673-A	0.413153573431517	4E-8		0.0081283655	[0.0052-0.011] unit decrease	NR [NR]	N
1745	chr3	152084242	152084243	rs7633673	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3q25.2	NR	rs7633673-A	0.413153573431517	4E-8		0.005194133	[0.0033-0.0071] unit decrease	NR [NR]	N
1745	chr3	152086532	152086533	rs13065698	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q25.2	NR	rs13065698-G	0.408056	2E-10		0.012279	[0.0085-0.016] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1745	chr3	152086532	152086533	rs13065698	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q25.2	MBNL1	rs13065698-A	0.6002	8E-13		1.05	[1.03-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1745	chr3	152143624	152143625	rs12633174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.2		rs12633174-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1745	chr3	152171869	152171870	rs3773910	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.2	MBNL1	rs3773910-C	0.7604	1E-10		0.0161	[0.011-0.021] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1746	chr3	152180136	152180137	rs3773912	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q25.2	NR	rs3773912-T	0.463	1E-8		0.001284	[0.00084-0.00173] unit decrease	Affymetrix [NR] (imputed)	N
1746	chr3	152180328	152180329	rs17437560	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q25.2	MBNL1	rs17437560-T	0.1056	3E-8		0.0175	[0.011-0.024] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1746	chr3	152196939	152196940	rs111901248	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	3q25.2		rs111901248-T	0.889222	8E-9		0.0376477	[0.025-0.05] unit increase	NR [11722792] (imputed)	N
1746	chr3	152204744	152204745	rs13320382	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q25.2	NR	rs13320382-A	NR	8E-11		0.0254	[0.018-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1746	chr3	152206061	152206062	rs9990017	34746714	Hahn T	2021-08-25	EClinicalMedicine	Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation.	Mortality after unrelated donor allogeneic hematopoietic cell transplantation (recipient effect)	2,799 European ancestry recipients	NA	3q25.2		rs9990017-T	0.12	3E-8		1.3912463	[1.23737475220599-1.56425238408097]	Illumina [8515276] (imputed)	N
1746	chr3	152303715	152303716	rs74985359	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q25.2		rs74985359-A	NR	4E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1747	chr3	152322773	152322774	rs74899755	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Number of common colds	43,826 European ancestry cases, 15,720 European ancestry controls	NA	3q25.2	NR	rs74899755-?	NR	1E-6		0.1208	[0.072-0.17] unit decrease	Illumina [at least 560000] (imputed)	N
1747	chr3	152330465	152330466	rs13084795	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End-stage renal disease	1,749 African American ESRD cases, 1,136 African American controls, 901 African American lupus nephritis-ESRD cases, 520 African American systemic lupus erythrematosus without nephropathy controls	NA	3q25.2	MBNL1	rs13084795-?	NR	6E-7	(adjusted for APOL1 genotype)			Illumina [NR]	N
1747	chr3	152382351	152382352	rs1850421	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q25.2	MBNL1	rs1850421-A	0.278	1E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
1747	chr3	152388737	152388741	rs397781817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q25.2		rs397781817-A	NR	2E-16		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1747	chr3	152406724	152406740	rs141579343	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q25.2		rs141579343-T	NR	3E-9		0.0701	[0.047-0.093] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1747	chr3	152417880	152417881	rs74653713	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q25.2	MBNL1	rs74653713-C	0.9571	1E-8		1.1	[1.06-1.13]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1747	chr3	152433627	152433628	rs35497231	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q25.2	MBNL1	rs35497231-C	0.3169	8E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1748	chr3	152451615	152451616	rs74672008	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q25.2	NR	rs74672008-G	0.9601	1E-11		0.0804	[0.057-0.104] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1748	chr3	152479911	152479912	rs13095565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q25.2	Intergenic	rs13095565-C	0.8551	9E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1748	chr3	152485123	152485124	rs142900875	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs142900875-T	0.999	9E-8	(AA)	2.257	NR unit increase	Illumina [NR] (imputed)	N
1748	chr3	152493488	152493489	rs181840477	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs181840477-T	0.999	5E-8	(AA)	2.235	NR unit increase	Illumina [NR] (imputed)	N
1748	chr3	152509222	152509223	rs185832426	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs185832426-G	0.999	5E-8	(AA)	2.231	NR unit increase	Illumina [NR] (imputed)	N
1748	chr3	152529560	152529564	rs140311102	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q25.2		rs140311102-C	NR	5E-9		0.0378	[0.025-0.051] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1748	chr3	152535364	152535365	rs10513432	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-2)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3q25.2	P2RY1	rs10513432-G		4E-7	(EA)			Illumina [NR]	N
1748	chr3	152540995	152540996	rs114239771	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs114239771-A	0.999	3E-8	(AA)	2.157	NR unit increase	Illumina [NR] (imputed)	N
1748	chr3	152566062	152566063	rs114373846	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	3q25.2	NR	rs114373846-C	NR	3E-6		0.422	[0.24-0.6] SD units decrease	NR [10700000] (imputed)	N
1749	chr3	152576107	152576108	rs148200394	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs148200394-T	0.999	2E-8	(AA)	2.133	NR unit increase	Illumina [NR] (imputed)	N
1749	chr3	152590537	152590538	rs60489888	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Breast cancer	10,682 White British ancestry cases, 138,504 White British ancestry controls	NA	3q25.2		rs60489888-?	NR	4E-6		0.917786	[0.88-0.95]	NR [682398]	N
1749	chr3	152590761	152590762	rs9847124	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer or chronic obstructive pulmonary disease	237 COPD cases, 204 GI cancer cases	NA	3q25.2	P2RY1	rs9847124-?		6E-7		0.07	[0.17-0.45] unit increase	Affymetrix [418365]	N
1749	chr3	152603815	152603816	rs140910939	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs140910939-T	1.0	2E-7	(AA)	2.096	NR unit increase	Illumina [NR] (imputed)	N
1749	chr3	152612392	152612393	rs149843939	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.2	Intergenic	rs149843939-C	0.999	9E-8	(AA)	1.986	NR unit increase	Illumina [NR] (imputed)	N
1749	chr3	152636303	152636304	rs16864709	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	3q25.2	P2RY1, RAP2B	rs16864709-?	NR	3E-7		0.191	NR unit increase	Affymetrix [NR]	N
1749	chr3	152638046	152638047	rs142660115	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Transverse temporal cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q25.2	NR	rs142660115-?		9E-6				Illumina [4322238] (imputed)	N
1749	chr3	152646243	152646244	rs6440833	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q25.2	P2RY1, RAP2B	rs6440833-A	0.4638	9E-10		1.021222		Affymetrix [11880941] (imputed)	N
1749	chr3	152646243	152646244	rs6440833	30275891	Das S	2018-09-17	BMC Proc	Family-based genome-wide association of inflammation biomarkers and fenofibrate treatment response in the GOLDN study.	HDL cholesterol and triglyceride levels	821 individuals	NA	3q25.2	Intergenic	rs6440833-?		5E-6				NR [NR]	N
1749	chr3	152672778	152672779	rs6785504	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	3q25.2	intergenic	rs6785504-T	NR	7E-6		2.11	[1.51-2.94]	Illumina [326385]	N
1750	chr3	152711259	152711260	rs7635777	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	3q25.2		rs7635777-?	NR	6E-6		1.2768127		Affymetrix [710007]	N
1750	chr3	152716681	152716682	rs75101555	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-6 levels	8,189 Finnish ancestry individuals	NA	3q25.2	NR	rs75101555-G	NR	3E-6		0.3667	[0.21-0.52] SD units increase	NR [10700000] (imputed)	N
1750	chr3	152721974	152721975	rs9883654	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	3q25.2	intergenic	rs9883654-T	NR	2E-6		2.2	[1.57-3.08]	Illumina [326385]	N
1751	chr3	152864621	152864622	rs9843465	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.2	P2RY1	rs9843465-?	NR	2E-6	(LPC 20:5)	0.25244564	[0.15-0.36] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1751	chr3	152890606	152890607	rs524562	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	3q25.2	NR	rs524562-T	0.682073	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
1752	chr3	152963212	152963213	rs7613619	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q25.2		rs7613619-A	NR	1E-10		0.0138	[0.0097-0.0179] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1752	chr3	152969290	152969291	rs79705207	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous melanoma or hair colour	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 352,662 European ancestry individuals	NA	3q25.2	RAP2B	rs79705207-A	0.927918	4E-8				Affymetrix, Illumina [NR] (imputed)	N
1752	chr3	152977858	152977859	rs6440859	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q25.2		rs6440859-A	0.574314	3E-9		0.013295947	[0.0089-0.0177] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr3	152987121	152987121	rs3068249	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q25.2		rs3068249-CAT	0.574095	4E-10		0.013979931	[0.0096-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1752	chr3	152990861	152990862	rs9289894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.2	NR	rs9289894-G	0.614013	1E-11				Affymetrix, Illumina [23472807] (imputed)	N
1752	chr3	152990861	152990862	rs9289894	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q25.2	NR	rs9289894-G	0.57583	2E-13		0.014057	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1752	chr3	152992715	152992716	rs9868297	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q25.2		rs9868297-G	NR	3E-12		0.0133	[0.0096-0.017] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1752	chr3	153000091	153000092	rs4680046	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q25.2	RAP2B	rs4680046-T	0.49	1E-13		0.47	[0.35-0.59] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1752	chr3	153000091	153000092	rs4680046	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q25.2	RAP2B	rs4680046-T	0.4853	3E-13		0.4833	[0.35-0.61] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1752	chr3	153000833	153000834	rs199749638	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.2	NR	rs199749638-T	0.513214	1E-10				Affymetrix, Illumina [24588908] (imputed)	N
1752	chr3	153085990	153085991	rs553470793	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid respiratory support vs population)	495 European ancestry cases, 680,440 European ancestry controls, 102 Hispanic or Latin American cases, 94,330 Hispanic or Latin American controls, 39 Black or African American cases, 22,410 Black or African American controls	NA	3q25.2		rs553470793-?	NR	2E-6		0.8941066	[0.53-1.26] unit decrease	Illumina [9842460] (imputed)	N
1752	chr3	153089878	153089879	rs6785565	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.2	RAP2B	rs6785565-?	NR	3E-6	(LPC 22:6)	0.8499051	[0.49-1.2] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1753	chr3	153096984	153096985	rs4680057	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	3q25.2	RAP2B, C3orf79	rs4680057-A	0.42	1E-6		0.06	[NR] unit increase	Illumina [at least 7000000] (imputed)	N
1753	chr3	153125289	153125290	rs184221467	32693751	Keene KL	2020-07-22	Stroke	Genome-Wide Association Study Meta-Analysis of Stroke in 22 000 Individuals of African Descent Identifies Novel Associations With Stroke.	Stroke	3,734 African ancestry cases, 18,317 African ancestry controls	NA	3q25.2	AK092619	rs184221467-A	NR	8E-7		1.85	[1.63-2.10]	Affymetrix, Illumina [~ 16900000] (imputed)	N
1753	chr3	153175350	153175351	rs9839852	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q25.2	NR	rs9839852-T	NR	5E-10		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
1753	chr3	153179474	153179478	rs10575037	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q25.2		rs10575037-C	NR	3E-9		0.0163	[0.011-0.022] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
1753	chr3	153184655	153184656	rs6778194	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3q25.2	LOC152118	rs6778194-C		2E-9	(AA)			Illumina [NR]	N
1753	chr3	153197767	153197768	rs12488221	35131881	Testori A	2022-02-07	Cancer Epidemiol Biomarkers Prev	Genetic analysis in African American children supports ancestry specific neuroblastoma susceptibility.	Neuroblastoma	629 African American cases, 2,990 African American controls	NA	3q25.2		rs12488221-T	NR	9E-6		0.3127	unit increase	Illumina [8524982] (imputed)	N
1753	chr3	153212331	153212332	rs2862078	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.2	RAP2B	rs2862078-?	NR	4E-6	(serotonin)	0.16388355	[0.094-0.234] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1754	chr3	153334749	153334750	rs17506814	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	3q25.2	NR	rs17506814-G	0.0131	7E-6		0.6165	[0.35-0.88] unit increase	Illumina [7305641] (imputed)	N
1754	chr3	153350115	153350116	rs7623788	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.2	NR	rs7623788-G	0.134195012466607	5E-6	(IGP27)	0.2057	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1755	chr3	153457691	153457692	rs112119642	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3q25.2	Intergenic	rs112119642-C	NR	7E-6		0.0432365	[0.024-0.062] unit decrease	Illumina [13520550] (imputed)	N
1755	chr3	153458970	153458971	rs10049473	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q25.2	intergenic	rs10049473-T	0.265969250195888	2E-7	(F_Lachnospiraceae_RNT)	0.128597	[0.08-0.177] unit increase	Illumina [7711310] (imputed)	N
1755	chr3	153472162	153472163	rs573872	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3q25.2	NR	rs573872-G	0.21904614895982213	5E-13	(EA)	1.31	[1.24-1.38]	Illumina [6576307] (imputed)	N
1755	chr3	153472162	153472163	rs573872	30281099	Fadista J	2018-10-02	Hum Mol Genet	Genome-wide meta-analysis identifies BARX1 and EML4-MTA3 as new loci associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,395 Danish ancestry cases, 4,438 Danish ancestry controls	1,794 European ancestry cases, 633 Hispanic ancestry cases, 1,875 European ancestry controls, 633 Hispanic ancestry controls	3q25.2	NR	rs573872-G	0.2175	2E-15		1.32	[1.25-1.38]	Illumina [6576307] (imputed)	N
1755	chr3	153472162	153472163	rs573872	23989729	Feenstra B	2013-08-21	JAMA	Plasma lipids, genetic variants near APOA1, and the risk of infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,371 European ancestry controls	925 European ancestry cases, 1,621 European ancestry controls, 738 cases, 697 controls	3q25.2	intergenic	rs573872-G	0.2282	5E-14		1.37	[1.26-1.48]	Illumina [9737928] (imputed)	N
1755	chr3	153472162	153472163	rs573872	22306654	Feenstra B	2012-02-05	Nat Genet	Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis.	Infantile hypertrophic pyloric stenosis	1,001 European ancestry cases, 2,401 European ancestry controls	796 European ancestry cases, 876 European ancestry controls	3q25.2	intergenic	rs573872-G	0.23	4E-12		1.41	[1.28-1.56]	Illumina [523420]	N
1755	chr3	153476334	153476335	rs4441621	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived sweetness of sucrose	686 European ancestry twins	NA	3q25.2	RP11-23D24.2	rs4441621-T	0.24	9E-6		0.56	[0.31-0.81] unit increase	Illumina [5833901] (imputed)	N
1755	chr3	153478422	153478423	rs6794649	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.2	NR	rs6794649-C	0.159420807120324	1E-6	(IGP4)	0.2074	[0.12-0.29] unit decrease	Illumina [~ 2500000] (imputed)	N
1755	chr3	153478422	153478423	rs6794649	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.2	NR	rs6794649-C	0.159404027112517	2E-6	(IGP44)	0.2013	[0.12-0.28] unit decrease	Illumina [~ 2500000] (imputed)	N
1757	chr3	153624312	153624313	rs143612888	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3q25.2	NR	rs143612888-?	NR	6E-10		6.201	NR z score increase	Illumina [at least 830937] (imputed)	N
1757	chr3	153657950	153657951	rs1568488	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q25.2		rs1568488-C	0.6	1E-11				NR [NR] (imputed)	N
1757	chr3	153657950	153657951	rs1568488	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q25.2		rs1568488-C	0.6	2E-14		0.012	% increase	NR [NR] (imputed)	N
1757	chr3	153657950	153657951	rs1568488	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q25.2	ARHGEF26	rs1568488-G	0.405272	4E-15		0.0110252	[0.0083-0.0138] unit decrease	Affymetrix [12370749]	N
1757	chr3	153657950	153657951	rs1568488	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.2	NR	rs1568488-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1757	chr3	153659195	153659196	rs73153977	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3q25.2		rs73153977-T	NR	4E-6		0.94791		Affymetrix, Illumina [62056310] (imputed)	N
1757	chr3	153691259	153691260	rs1464419	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q25.2	NR	rs1464419-?	NR	2E-8		0.12526	[0.081-0.169] unit increase	Affymetrix [7794483] (imputed)	N
1757	chr3	153699975	153699976	rs6440919	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q25.2	RP11-23D24.2	rs6440919-T	0.493	1E-6		0.0316	[0.019-0.044] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1757	chr3	153721492	153721493	rs73158427	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	3q25.2	ARHGEF26	rs73158427-T	0.8383	2E-14		0.1801	[0.13-0.23] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1757	chr3	153731155	153731156	rs61793489	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	3q25.2		rs61793489-C	NR	7E-6		0.94942		Affymetrix, Illumina [62056310] (imputed)	N
1757	chr3	153744232	153744233	rs4679729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q25.2		rs4679729-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1758	chr3	153758805	153758806	rs1949633	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	3q25.2		rs1949633-?	NR	4E-8		0.0114162	[0.0073-0.0155] unit decrease	NR [6912294] (imputed)	N
1758	chr3	153776298	153776299	rs12636984	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.2	NR	rs12636984-T	0.486	3E-9		0.00642354	[0.0043-0.0085] unit decrease	NR [9732723] (imputed)	N
1758	chr3	153806913	153806914	rs181220614	29899525	Klimentidis YC	2018-06-13	Int J Obes (Lond)	Genome-wide association study of habitual physical activity in over 377,000 UK Biobank participants identifies multiple variants including CADM2 and APOE.	Moderate to vigorous physical activity levels	377,234 European ancestry individuals	NA	3q25.2	ARHGEF26-AS1	rs181220614-C	0.99	9E-10	(model 2)	0.07	unit decrease	Affymetrix [11800000] (imputed)	N
1758	chr3	153839865	153839866	rs12493885	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q25.2	ARHGEF26, ARHGEF26-AS1	rs12493885-C	0.8641	1E-14		0.074	[0.055-0.093] unit increase	NR [8041861] (imputed)	N
1758	chr3	153839865	153839866	rs12493885	28714975	Nelson CP	2017-07-17	Nat Genet	Association analyses based on false discovery rate implicate new loci for coronary artery disease.	Coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease)	18,467 European and unknown ancestry cases, 45,264 European and unknown ancestry controls	57,347 European and unknown ancestry cases, 219,521 European and unknown ancestry controls	3q25.2	ARHGEF26	rs12493885-C	0.867	3E-8		1.073	[1.047-1.101]	Affymetrix [9149595] (imputed)	N
1758	chr3	153839865	153839866	rs12493885	28714974	Klarin D	2017-07-17	Nat Genet	Genetic analysis in UK Biobank links insulin resistance and transendothelial migration pathways to coronary artery disease.	Coronary artery disease	4,831 European ancestry cases, 115,455 European ancestry controls	up to 60,801 European and unknown ancestry cases, up to 123,504 European and unknown ancestry controls	3q25.2	ARHGEF26	rs12493885-C	0.85	1E-9		1.08	[1.06-1.11]	Affymetrix [9061845] (imputed)	N
1758	chr3	153843666	153843667	rs1727889	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q25.2		rs1727889-G	NR	3E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1758	chr3	153858472	153858473	rs921316	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q25.2		rs921316-G	0.49	1E-9		6.08	z score increase	Affymetrix [9061022] (imputed)	N
1758	chr3	153873387	153873388	rs1713814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q25.2		rs1713814-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1758	chr3	153875712	153875713	rs1727949	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q25.2	ARHGEF26	rs1727949-?	NR	2E-8		0.039996	[0.026-0.054] unit increase	Illumina [4804024] (imputed)	N
1759	chr3	153878889	153878889	rs761296397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q25.2		rs761296397-TG	NR	3E-9		0.0229	[0.015-0.031] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1759	chr3	153878889	153878889	rs761296397	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q25.2	NR	rs761296397-TG	NR	4E-9		0.0239	[0.016-0.032] unit increase	Affymetrix [9000000] (imputed)	N
1759	chr3	153884516	153884517	rs357489	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.2	ARHGEF26	rs357489-A	0.7092	1E-12		0.2101	[0.15-0.27] mmHg decrease	Affymetrix [NR] (imputed)	N
1759	chr3	153885005	153885006	rs357488	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q25.2	NR	rs357488-A	0.15	1E-9		0.0158	[0.011-0.021] unit decrease	NR [NR]	N
1759	chr3	153906988	153906989	rs376114	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q25.2		rs376114-T	NR	3E-14		0.0125	[0.0094-0.0156] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1759	chr3	153918802	153918802	rs397742649	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q25.2		rs397742649-AT	NR	7E-10		0.0177	[0.012-0.023] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1759	chr3	153924783	153924784	rs453699	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q25.2		rs453699-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1759	chr3	153929794	153929795	rs1657621	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q25.2		rs1657621-?	NR	5E-13				NR [~ 8900000] (imputed)	N
1759	chr3	153953439	153953440	rs357501	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q25.2		rs357501-A	NR	8E-11		0.0126	[0.0089-0.0163] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1759	chr3	153956811	153956812	rs357503	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3q25.2	NR	rs357503-G	NR	4E-9		0.0156	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
1759	chr3	153962973	153962974	rs56038139	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q25.2	NR	rs56038139-G	NR	2E-7		1.1111112	[NR]	Illumina [7158791] (imputed)	N
1759	chr3	153964495	153964496	rs355748	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q25.2	ARHGEF26	rs355748-G	0.62244	7E-12		0.00994327	[0.0071-0.0128] unit decrease	Affymetrix [12370749]	N
1759	chr3	153980129	153980130	rs433903	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q25.2	ARHGEF26	rs433903-G	0.837766	2E-8		1.06	[1.04-1.09]	NR [8126035] (imputed)	N
1760	chr3	154018886	154018887	rs9438	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q25.2	NR	rs9438-G	NR	1E-6		0.014	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
1760	chr3	154018886	154018887	rs9438	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3q25.2	DHX36	rs9438-C	0.3991	2E-13		0.013	[0.0095-0.0165] unit increase	Illumina [246328]	N
1760	chr3	154024164	154024165	rs355754	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q25.2	NA	rs355754-T	0.6027	7E-18		0.0145	[0.011-0.018] unit decrease	NR [~ 27400000] (imputed)	N
1760	chr3	154034949	154034950	rs355777	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.2	NR	rs355777-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1760	chr3	154034949	154034950	rs355777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q25.2		rs355777-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1760	chr3	154034949	154034950	rs355777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q25.2	NA	rs355777-C	0.3984	2E-18		0.0151	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
1760	chr3	154034949	154034950	rs355777	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q25.2	NA	rs355777-C	0.3984	2E-18		0.0151	[0.012-0.018] unit increase	NR [~ 27400000] (imputed)	N
1760	chr3	154036705	154036706	rs355772	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q25.2	DHX36	rs355772-A	0.387	4E-14	(Programmed cell death 1 ligand 2, PDCD1LG2.3004.67.2)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1760	chr3	154054798	154054799	rs701145	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q25.2	GPR149	rs701145-T	0.143	4E-14		0.072	[0.054-0.09] unit decrease	Affymetrix [7947838] (imputed)	N
1760	chr3	154057740	154057741	rs789294	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q25.2	GPR149	rs789294-C	0.1649	3E-15		0.0642	[0.048-0.08] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1760	chr3	154070632	154070633	rs182558934	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GPR149	rs182558934-?	NR	4E-11	(female)	0.644491	[NR] unit increase	Affymetrix [NR] (imputed)	N
1760	chr3	154088410	154088411	rs1086056	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q25.2	GPR149	rs1086056-T	0.155371	4E-10		0.0165187	[0.011-0.022] unit increase	Affymetrix [NR] (imputed)	N
1760	chr3	154088410	154088411	rs1086056	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q25.2	GPR149	rs1086056-T	0.15533	4E-12		0.0188421	[0.014-0.024] unit increase	Affymetrix [NR] (imputed)	N
1760	chr3	154090021	154090022	rs789298	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.2	NR	rs789298-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1760	chr3	154091065	154091066	rs10935984	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	3q25.2	GPR149	rs10935984-A	0.084003	2E-6		0.564896	[0.33-0.8] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1760	chr3	154091931	154091931	rs10663496	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		GPR149	rs10663496-?	NR	4E-8	(female)	1.48421	[NR] unit increase	Affymetrix [NR] (imputed)	N
1761	chr3	154263174	154263175	rs34097149	29397368	Meng W	2018-01-31	EBioMedicine	A Genome-Wide Association Study Finds Genetic Associations with Broadly-Defined Headache in UK Biobank (N=223,773).	Headache	74,461 British ancestry cases, 149,321 British ancestry controls	NA	3q25.2	Intergenic	rs34097149-C	NR	1E-10		0.0297	[0.021-0.039] unit decrease	Affymetrix [9304965] (imputed)	N
1762	chr3	154273969	154273970	rs73164463	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in anxiety disorder	972 European ancestry adult cases	NA	3q25.2	DHX36, GPR149	rs73164463-C	0.1	4E-6		0.34	[0.2-0.48] unit decrease	Illumina [at least 4710000] (imputed)	N
1762	chr3	154281859	154281860	rs10513462	33109212	Chang H	2020-10-28	BMC Med	Genetic architecture of cardiometabolic risks in people living with HIV.	Triglyceride levels in HIV infection	3,095 European ancestry individuals, 3,189 African American individuals	NA	3q25.2	GPR149, MME	rs10513462-?		7E-6	(African American)	0.1202219	[0.068-0.172] unit increase	Illumina [13620258] (imputed)	N
1762	chr3	154289945	154289946	rs13078967	27322543	Gormley P	2016-06-20	Nat Genet	Meta-analysis of 375,000 individuals identifies 38 susceptibility loci for migraine.	Migraine	59,674 European ancestry cases, 316,078 European ancestry controls	NA	3q25.2	GPR149	rs13078967-?	0.97	2E-9		1.1494253	[1.1-1.2]	Affymetrix, Illumina, Perlegen [8094889] (imputed)	N
1762	chr3	154400550	154400551	rs9976928	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Perceived unattractiveness to mosquitoes	16,576 European ancestry individuals	NA		intergenic	rs9976928-G	NR	8E-6		0.431743	[0.24-0.62] unit decrease	Illumina [7433384] (imputed)	N
1763	chr3	154455744	154455745	rs7632135	32723796	Mehta SD	2020-07-28	mSystems	Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.	Vaginal microbiome composition (Shannon diversity index)	171 Kenyan ancestry individuals	NA	3q25.2	GPR149, MME	rs7632135-G	0.24	4E-6		0.59	NR unit decrease	Illumina [336151] (imputed)	N
1763	chr3	154516024	154516025	rs7639060	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q25.2	NR	rs7639060-?	NR	1E-8				Illumina [7760689] (imputed)	N
1764	chr3	154615818	154615819	rs113161639	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.2	GPR149, MME	rs113161639-G		4E-12		0.451	unit increase	Affymetrix [at least 2696785] (imputed)	N
1764	chr3	154615818	154615819	rs113161639	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.2	GPR149, MME	rs113161639-G		3E-13		0.288	unit increase	Affymetrix [at least 2696785] (imputed)	N
1765	chr3	154690338	154690339	rs79692989	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q25.2		rs79692989-?	NR	7E-12				NR [~ 8900000] (imputed)	N
1765	chr3	154690338	154690339	rs79692989	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.2	intergenic	rs79692989-T	0.0954	4E-8		0.3226	[0.21-0.44] mmHg decrease	Affymetrix [NR] (imputed)	N
1765	chr3	154696079	154696080	rs9860660	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q25.2		rs9860660-A	NR	3E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1765	chr3	154696079	154696080	rs9860660	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q25.2	NR	rs9860660-A	0.485398	4E-10		0.011757	[0.0081-0.0154] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1765	chr3	154707966	154707967	rs143112823	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3q25.2	RP11- 439C8.2	rs143112823-A	0.09	1E-14		0.403	[0.3-0.5] unit decrease	Affymetrix [~ 9800000] (imputed)	N
1765	chr3	154710608	154710609	rs79079433	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	3q25.2	NR	rs79079433-?	NR	4E-6		0.2213	[0.12-0.32] unit decrease	Illumina [at least 560000] (imputed)	N
1765	chr3	154746037	154746038	rs78022684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.2	NR	rs78022684-A	0.01045	7E-11	(AGXT)	8.021	NR unit increase	Illumina [1671387] (imputed)	N
1765	chr3	154746037	154746038	rs78022684	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.2	NR	rs78022684-A	0.01045	7E-10	(ACAA1)	1.523	NR unit increase	Illumina [1671387] (imputed)	N
1766	chr3	154801977	154801978	rs61762319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q25.2	NR	rs61762319-G	0.02905599999999997	1E-11		0.0607202	[0.043-0.078] unit increase	Affymetrix [16577313] (imputed)	N
1766	chr3	154801977	154801978	rs61762319	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	3q25.2	NR	rs61762319-G	0.029142	3E-8		0.0499764	[0.032-0.068] unit increase	Affymetrix [16577424] (imputed)	N
1766	chr3	154807212	154807213	rs61762349	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	3q25.2	MME	rs61762349-A	0.02	3E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [7891602] (imputed)	N
1766	chr3	154895750	154895751	rs540690425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Back pain	22,413 European ancestry cases, 445,856 European ancestry controls, 1,732 East Asian ancestry cases, 176,994 East Asian ancestry controls	NA	3q25.2		rs540690425-T	NR	1E-8		0.3708	[0.24-0.5] unit increase	Affymetrix, Illumina [25841286] (imputed)	N
1767	chr3	155003602	155003603	rs4679741	34407845	Morra A	2021-08-18	Breast Cancer Res	Association of germline genetic variants with breast cancer-specific survival in patient subgroups defined by clinic-pathological variables related to tumor biology and type of systemic treatment.	15-year breast cancer-specific survival (ER positive treated with endocrine therapy)	30,137 European ancestry individuals	NA	3q25.2		rs4679741-?	NR	2E-7		1.18	[1.11-1.26]	NR [10000000] (imputed)	N
1767	chr3	155045429	155045430	rs6440972	24792382	Park TJ	2014-04-30	Clin Chim Acta	Genome-wide association study identifies ALLC polymorphisms correlated with FEV? change by corticosteroid.	Response to inhaled corticosteroid treatment in asthma (change in FEV1)	189 Korean ancestry cases	NA	3q25.31	FLJ46120	rs6440972-?		8E-7		0.353	[NR] unit increase	Illumina [430487]	N
1768	chr3	155070464	155070465	rs6440974	25897833	Thompson AG	2015-04-21	Transl Psychiatry	Genome-wide association study of behavioural and psychiatric features in human prion disease.	Psychotic symptoms in prion disease	Up to 170 cases	NA	3q25.31	LOC100507537	rs6440974-?	0.099	4E-6		5.27	[2.52-11.03]	Illumina [518938]	N
1768	chr3	155088439	155088440	rs73873153	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3q25.31	NR	rs73873153-?	NR	3E-6		0.52238	[0.3-0.74] unit decrease	NR [13958389] (imputed)	N
1768	chr3	155145351	155145352	rs6440985	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	3q25.31	NR	rs6440985-?		1E-6		1.91	[NR]	Illumina [NR] (imputed)	N
1768	chr3	155149841	155149842	rs9823179	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		PLCH1	rs9823179-?	NR	6E-11	(female)	0.464571	[NR] unit increase	Affymetrix [NR] (imputed)	N
1768	chr3	155163659	155163660	rs112507972	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.31	NR	rs112507972-C	0.01568	4E-9	(DPP7)	0.1411	NR unit increase	Illumina [1671387] (imputed)	N
1769	chr3	155200562	155200563	rs1816522	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q25.31	NR	rs1816522-?	NR	2E-9				Affymetrix [NR]	N
1769	chr3	155267439	155267440	rs3851357	33740410	Warrier V	2021-03-16	Lancet Psychiatry	Gene-environment correlations and causal effects of childhood maltreatment on physical and mental health: a genetically informed approach.	Childhood maltreatment	185,414 European ancestry individuals	NA	3q25.31	NR	rs3851357-A	0.18	3E-8		0.025	[0.017-0.033] unit decrease	Affymetrix, Illumina [at least 500527] (imputed)	N
1769	chr3	155267439	155267440	rs3851357	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q25.31	NR	rs3851357-G	0.805635591718611	9E-6	(IGP31)	0.1814	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
1770	chr3	155334843	155334844	rs13077520	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	3q25.31	NR	rs13077520-C	0.2167	6E-9		0.014556526	[0.0097-0.0194] unit decrease	Affymetrix [10613246] (imputed)	N
1770	chr3	155334843	155334844	rs13077520	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3q25.31	NR	rs13077520-C	0.225	8E-10		0.012711265	[0.0087-0.0168] unit decrease	Affymetrix [NR] (imputed)	N
1770	chr3	155385922	155385923	rs16825225	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q25.31	NR	rs16825225-?	NR	3E-7				Affymetrix [NR]	N
1770	chr3	155409349	155409350	rs114436839	29471430	Tanikawa C	2018-02-17	Carcinogenesis	GWAS Identifies Two Novel Colorectal Cancer Loci at 16q24.1 and 20q13.12.	Colorectal cancer	6,692 Japanese ancestry cases, 27,178 Japanese ancestry controls	3,713 Japanese ancestry cases, 7,333 Japanese ancestry controls	3q25.31	NR	rs114436839-A	NR	1E-6		1.4265335	[1.24-1.64]	Illumina [6774630] (imputed)	N
1770	chr3	155427020	155427021	rs358729	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q25.31		rs358729-G	0.39	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1770	chr3	155432228	155432229	rs492858	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q25.31	NR	rs492858-C	0.9241	3E-9		1.0683761	[1.05-1.09]	Affymetrix, Illumina [NR] (imputed)	N
1770	chr3	155434278	155434279	rs358723	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q25.31		rs358723-T	0.28	1E-8		5.73	z score increase	Affymetrix [9061022] (imputed)	N
1771	chr3	155534371	155534372	rs55662848	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q25.31	NR	rs55662848-?	NR	3E-7		5.155	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1771	chr3	155542391	155542392	rs11325455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q25.31		rs11325455-A	NR	4E-11		0.0155	[0.011-0.02] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
1771	chr3	155546123	155546124	rs76440173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q25.31		rs76440173-T	NR	2E-8		0.0916	[0.06-0.124] unit increase	Affymetrix, Illumina [20536134] (imputed)	N
1771	chr3	155547273	155547274	rs382534	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	3q25.31	SLC33A1	rs382534-C	0.75	2E-10		6.34	z-score increase	Affymetrix [4311822] (imputed)	N
1771	chr3	155547273	155547274	rs382534	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.31	SLC33A1	rs382534-T	0.2379	2E-9		0.0149	[0.01-0.0198] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1771	chr3	155550474	155550475	rs111585420	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	3q25.31	NR	rs111585420-A	0.037	9E-6		0.043187592	[0.024-0.062] unit increase	Affymetrix [up to 6544775] (imputed)	N
1771	chr3	155552310	155552311	rs1991545	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Focal epilepsy (with hippocampal sclerosis)	709 European ancestry cases, 24,218 European ancestry controls	NA	3q25.31	C3orf33, SLC33A1, KCNAB1	rs1991545-A	0.04	1E-11		6.78	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
1771	chr3	155553202	155553203	rs390677	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q25.31	Intergenic	rs390677-T	0.2596	6E-9	(MTAG)	0.011	[0.0073-0.0147] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr3	155557938	155557939	rs6794232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q25.31		rs6794232-C	NR	7E-9		0.0121	[0.008-0.0162] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1771	chr3	155560977	155560978	rs407258	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q25.31	SLC33A1	rs407258-T	0.74537	7E-10		0.00269908	[0.0018-0.0036] unit increase	Affymetrix [13995440] (imputed)	N
1771	chr3	155562071	155562072	rs6441017	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q25.31	SLC33A1	rs6441017-C	0.73	8E-9		5.76	z-score increase	Affymetrix [4312306] (imputed)	N
1771	chr3	155562444	155562445	rs138663962	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q25.31	Intergenic	rs138663962-T	0.0551	5E-8	(MTAG)	0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr3	155567674	155567675	rs112013645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q25.31	Intergenic	rs112013645-T	0.2589	9E-11	(MTAG)	0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1771	chr3	155567674	155567675	rs112013645	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q25.31	Intergenic	rs112013645-C	0.7411	2E-9		0.0134	[0.0091-0.0177] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1772	chr3	155649575	155649576	rs61750370	27453504	Rhee EP	2016-07-25	Nat Commun	An exome array study of the plasma metabolome.	Blood metabolite levels	2,076 European ancestry individuals	1,528 European ancestry individuals	3q25.31	GMPS	rs61750370-C	0.01	9E-10	(Xanthosine)	0.78	unit increase	Illumina [81021]	N
1772	chr3	155651162	155651163	rs3772116	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q25.31	NR	rs3772116-?	NR	7E-6		4.491	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1773	chr3	155716420	155716421	rs819865	32572135	Zhao Y	2020-06-22	Sci Rep	Four Loci Are Associated with Cardiorespiratory Fitness and Endurance Performance in Young Chinese Females.	Cardiorespiratory fitness (800m run time)	762 Han Chinese ancestry individuals	NA	3q25.31	GMPS	rs819865-G		9E-9		16.9	[NR] unit increase	Affymetrix, Illumina [5129327] (imputed)	N
1774	chr3	155855417	155855418	rs4679760	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q25.31	KCNAB1	rs4679760-G	0.585732	2E-25		0.033272	[0.027-0.04] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1775	chr3	156004953	156004954	rs13082914	26708285	Wakil SM	2016-02-01	Atherosclerosis	A genome-wide association study reveals susceptibility loci for myocardial infarction/coronary artery disease in Saudi Arabs.	Coronary artery disease	2,165 Saudi Arab ancestry cases, 2,266 Saudi Arab ancestry controls	503 Saudi Arab ancestry cases, 734 Saudi Arab ancestry controls	3q25.31	KCNAB1	rs13082914-T	0.22	3E-10		1.21	[NR]	Affymetrix [537798]	N
1775	chr3	156032177	156032178	rs6770663	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced hypertension	1,039 European ancestry individuals	NA	3q25.31	KCNAB1	rs6770663-G	0.09	4E-6		0.58	[0.33-0.83] unit increase	Illumina [833710]	N
1775	chr3	156102733	156102734	rs3772255	17903295	Lunetta KL	2007-09-19	BMC Med Genet	Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study.	Aging traits	1,345 individuals from 330 families	NA	3q25.31	KCNAB1	rs3772255-?	NR	8E-6	(biologic age)			Affymetrix [70897]	N
1775	chr3	156105083	156105084	rs7615568	24951543	Liao J	2014-06-20	Hum Mol Genet	Meta-analysis of genome-wide association studies in multiethnic Asians identifies two loci for age-related nuclear cataract.	Age-related nuclear cataracts	2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals, 2,571 Chinese ancestry individuals	NA	3q25.31	KCNAB1	rs7615568-G	0.09	1E-8	(Random effect)	0.11	[0.051-0.169] unit increase	Illumina [4736131] (imputed)	N
1776	chr3	156236561	156236562	rs11926999	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q25.31	Intergenic	rs11926999-?		6E-6		1.1627907	[1.09-1.25]	Illumina [7645193] (imputed)	N
1777	chr3	156279490	156279491	rs59075594	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q25.31		rs59075594-?	NR	5E-10				NR [~ 8900000] (imputed)	N
1777	chr3	156285509	156285510	rs35612054	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	3q25.31		rs35612054-T	NR	3E-8		0.064	[0.041-0.087] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
1777	chr3	156291262	156291263	rs10513494	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3q25.31	NR	rs10513494-?	NR	4E-8	(Carbonic anhydrase I)	0.42	[0.26-0.58] unit increase	Illumina [4020654] (imputed)	N
1777	chr3	156291262	156291263	rs10513494	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3q25.31	NR	rs10513494-?	NR	3E-8	(PUR8)	0.42	[0.26-0.58] unit increase	Illumina [4020654] (imputed)	N
1777	chr3	156295340	156295341	rs9826775	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q25.31	NA	rs9826775-A	0.8513	7E-11		0.0155	[0.011-0.02] unit increase	NR [~ 27400000] (imputed)	N
1777	chr3	156296139	156296140	rs4680283	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3q25.31	NR	rs4680283-?	NR	9E-6				Illumina [4020654] (imputed)	N
1777	chr3	156296558	156296559	rs9870575	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q25.31	NA	rs9870575-A	0.1416	1E-10		0.0153	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1777	chr3	156300723	156300724	rs1510272	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	3q25.31	SSR3, TIPARP	rs1510272-T	0.26	7E-9		1.2048193	[1.14-1.28]	Illumina [9210350] (imputed)	N
1777	chr3	156300723	156300724	rs1510272	28604728	Litchfield K	2017-06-12	Nat Genet	Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.	Testicular germ cell tumor	5,518 European ancestry cases, 19,055 European ancestry controls	1,801 European ancestry cases, 4,027 European ancestry controls	3q25.31	intergenic	rs1510272-C	0.75	2E-12		1.23	[1.17-1.28]	Illumina [at least 371504] (imputed)	N
1777	chr3	156310775	156310776	rs6441084	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	3q25.31	NR	rs6441084-?		3E-6		4.57	[2.8-6.34] unit increase	Illumina [~ 4900000] (imputed)	N
1777	chr3	156310775	156310776	rs6441084	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	3q25.31	SSR3, TIPARP-AS1	rs6441084-A	0.28	4E-6		1.038	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
1777	chr3	156311652	156311653	rs5853756	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum phosphate levels	312,888 European ancestry individuals, 5,568 African ancestry individuals, 6,685 South Asian ancestry individuals	NA	3q25.31	NR	rs5853756-G	NR	1E-9		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1777	chr3	156317072	156317073	rs9843340	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q25.31	NR	rs9843340-C	0.15	2E-10		0.022144713	[0.015-0.029] unit decrease	Affymetrix [10549349] (imputed)	N
1777	chr3	156317072	156317073	rs9843340	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	3q25.31	NR	rs9843340-T	0.8588	1E-7		0.0134	[0.0085-0.0183] unit increase	NR [~ 27400000] (imputed)	N
1777	chr3	156336113	156336114	rs12485954	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3q25.31	NR	rs12485954-?	NR	2E-7	(Ferritin)	0.47	[0.29-0.65] unit increase	Illumina [4020654] (imputed)	N
1777	chr3	156336554	156336555	rs7651778	23761726	Yazar S	2013-06-06	Mol Vis	Interrogation of the platelet-derived growth factor receptor alpha locus and corneal astigmatism in Australians of Northern European ancestry: results of a genome-wide association study.	Corneal astigmatism	2,784 European ancestry individuals		3q25.31	NR	rs7651778-C	NR	5E-6		0.126	[0.071-0.181] unit increase	Illumina [~ 2500000] (imputed)	N
1777	chr3	156342848	156342849	rs2102506	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q25.31	SSR3, TIPARP	rs2102506-A	0.6413	6E-8		0.00957602	[0.0061-0.013] unit decrease	Affymetrix [11880941] (imputed)	N
1777	chr3	156342848	156342849	rs2102506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q25.31		rs2102506-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1777	chr3	156348584	156348585	rs885255	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.31	SSR3	rs885255-?	NR	5E-6	(DAG 36:1)	0.16780367	[0.096-0.24] unit increase	Affymetrix [at least 2500000] (imputed)	N
1777	chr3	156356156	156356157	rs13097957	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3q25.31	NR	rs13097957-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1777	chr3	156363241	156363242	rs2136690	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q25.31	NR	rs2136690-G	0.5774	4E-6	(EA)	0.0289	[0.017-0.041] unit increase	Illumina [~ 11800000] (imputed)	N
1778	chr3	156379636	156379637	rs9834519	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q25.31	TIPARP	rs9834519-C	0.918866	8E-10		0.015592	[0.011-0.021] unit increase	Affymetrix [12370749]	N
1778	chr3	156379636	156379637	rs9834519	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.31	NR	rs9834519-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
1778	chr3	156379636	156379637	rs9834519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q25.31		rs9834519-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1778	chr3	156382491	156382492	rs62276616	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.31		rs62276616-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1778	chr3	156393442	156393443	rs144747702	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TIPARP	rs144747702-?	NR	2E-10		2.5184	[NR] unit increase	Affymetrix [NR] (imputed)	N
1778	chr3	156397173	156397174	rs345985	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	3q25.31		rs345985-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1778	chr3	156397748	156397749	rs2665390	23544013	Couch FJ	2013-03-27	PLoS Genet	Genome-wide association study in BRCA1 mutation carriers identifies novel loci associated with breast and ovarian cancer risk.	Ovarian cancer in BRCA1 mutation carriers	683 European ancestry cases, 2,044 European ancestry controls	1,706 European ancestry cases, 10,258 European ancestry controls	3q25.31	intergenic	rs2665390-C	0.043	7E-6		1.46	[1.25-1.71]	Illumina [2568349] (imputed)	N
1778	chr3	156397748	156397749	rs2665390	20852632	Goode EL	2010-09-19	Nat Genet	A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.	Ovarian cancer	1,768 European ancestry cases, 2,354 European ancestry controls	8,709 European ancestry cases, 51,764 European ancestry controls	3q25.31	TIPARP	rs2665390-C	NR	3E-7		1.19	[1.11-1.27]	Illumina [2056878] (imputed)	N
1778	chr3	156406996	156406997	rs7651446	25581431	Kuchenbaecker KB	2015-01-12	Nat Genet	Identification of six new susceptibility loci for invasive epithelial ovarian cancer.	Epithelial ovarian cancer	4,368 European ancestry cases, 9,123 European ancestry controls,	2,462 European ancestry BRCA1 mutation carrier cases, 12,790 European ancestry BRCA1 mutation carrier controls, up to 631 European ancestry BRCA2 mutation carrier cases, 7,580 European ancestry BRCA2 mutation carrier controls, 9,627 European ancestry serous cases, 1,442 European ancestry non-serous cases, 21,722 European ancestry controls	3q25.31	TIPARP	rs7651446-A	0.05	6E-51		1.59	[1.48-1.70]	Illumina [up to 10962898] (imputed)	N
1778	chr3	156406996	156406997	rs7651446	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	3q25.31	NR	rs7651446-?	0.05	2E-34	(Serious invasive)	1.59	[1.48-1.71]	Illumina [2508744] (imputed)	N
1778	chr3	156406996	156406997	rs7651446	23535730	Pharoah PD	2013-04-01	Nat Genet	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.	Ovarian cancer	3,769 European ancestry cases, 4,396 European ancestry controls	211 East Asian ancestry cases, 972 East Asian ancestry controls, 39,674 European ancestry individuals, 106 Malaysian ancestry cases, 106 Malaysian ancestry controls	3q25.31	NR	rs7651446-?	0.05	2E-29	(All invasive)	1.44	[1.35-1.54]	Illumina [2508744] (imputed)	N
1778	chr3	156418403	156418404	rs7636965	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs7636965-?	NR	3E-18		0.0181061	[0.014-0.022] unit decrease	Affymetrix [20259828] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Serous invasive ovarian cancer	14,049 European ancestry cases, 40,941 European ancestry controls	NA	3q25.31	NR	rs62274041-G	0.0481682	3E-46		1.5885553	[1.49139660538722-1.69204355063709]	Illumina [11595112] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA2 mutation carriers	954 European ancestry carrier cases, 11,458 European ancestry carrier controls	NA	3q25.31	NR	rs62274041-G	0.048	3E-7		1.85	[1.46354854927152-2.33435588308994]	Illumina [11595112] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Ovarian cancer in BRCA1 mutation carriers	2,933 European ancestry carrier cases, 16,103 European ancestry carrier controls	NA	3q25.31	NR	rs62274041-G	0.0481682	5E-7		1.4226197	[1.23974783491848-1.63246639995579]	Illumina [11595112] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Invasive epithelial ovarian cancer	22,406 European ancestry cases, 40,941 European ancestry controls	NA	3q25.31	NR	rs62274041-G	0.0481682	5E-38		1.4494933	[1.3698151996842-1.53380589540381]	Illumina [11595112] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	High-grade serous ovarian cancer	13,037 European ancestry cases, 40,941 European ancestry controls	NA	3q25.31	NR	rs62274041-G	0.0481682	4E-49		1.630706	[1.52886835426178-1.73932685946596]	Illumina [11595112] (imputed)	N
1778	chr3	156435639	156435640	rs62274041	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	3q25.31	NR	rs62274041-G	0.048	2E-57		1.57	[1.48-1.66]	Illumina [11595112] (imputed)	N
1778	chr3	156440916	156440917	rs6803350	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs6803350-?	NR	6E-32		0.0543208	[0.045-0.064] unit increase	Affymetrix [20259828] (imputed)	N
1778	chr3	156443384	156443385	rs13061457	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3q25.31	TIPARP	rs13061457-T	0.60973	2E-8		1.0255386	NR	Affymetrix [~ 9600000] (imputed)	N
1778	chr3	156468780	156468780	rs11442947	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs11442947-?	NR	2E-11		0.0141821	[0.01-0.018] unit increase	Affymetrix [20259828] (imputed)	N
1778	chr3	156471712	156471713	rs9838430	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3q25.31	LINC00886	rs9838430-?	NA	9E-15		1.98	[1.47-2.49] unit decrease	Affymetrix [5541230] (imputed)	N
1778	chr3	156472070	156472071	rs9822953	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	3q25.31	TIPARP, LINC00886	rs9822953-T	0.67	5E-11		2.22	[1.57-2.87] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1778	chr3	156474151	156474152	rs344024	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3q25.31	NR	rs344024-A	0.7658	3E-12	(European)	0.0504	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1778	chr3	156474421	156474422	rs13067180	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	3q25.31	LINC00886	rs13067180-T	0.328	5E-8		2.271	[1.46-3.09] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1778	chr3	156474523	156474524	rs12107178	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q25.31		rs12107178-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1778	chr3	156484221	156484222	rs6781237	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3q25.31	NR	rs6781237-C	0.7577	6E-13		0.0473	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1778	chr3	156491159	156491160	rs9867857	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-18 levels	21,758 European ancestry individuals	9,173 individuals	3q25.31		rs9867857-T	0.47	6E-7		0.0413	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1778	chr3	156492757	156492758	rs9818780	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Melanoma	6,777 European ancestry cases, 410,350 European ancestry controls	NA	3q25.31		rs9818780-C	0.488672	3E-8		1.1016855	NR	Affymetrix [7846216] (imputed)	N
1778	chr3	156492757	156492758	rs9818780	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	3q25.31		rs9818780-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1779	chr3	156505363	156505364	rs343994	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q25.31	LINC00886	rs343994-G	0.587951	5E-20		0.0172519	[0.014-0.021] unit increase	NR [13737936] (imputed)	N
1779	chr3	156512415	156512415	rs140559425	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q25.31		rs140559425-AAAT	NR	3E-11		0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
1779	chr3	156512816	156512817	rs9859058	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or resting heart rate (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 458,969 European ancestry individuals	NA	3q25.31	LEKR1, LINC00886, PA2G4P4, TIPARP, TIPARP-AS1	rs9859058-?	NR	4E-11				Affymetrix [up to 7325140] (imputed)	N
1779	chr3	156518434	156518435	rs2163296	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	3q25.31	NR	rs2163296-C		8E-6		0.1173	[0.066-0.169] SD units decrease	NR [10700000] (imputed)	N
1779	chr3	156518668	156518668	rs78579487	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q25.31	NR	rs78579487-GTT	0.614	4E-7	(EA)	0.0324	[0.02-0.045] unit increase	Illumina [~ 11800000] (imputed)	N
1779	chr3	156534627	156534628	rs11717138	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	3q25.31	TIPARP, LEKR1	rs11717138-?	NR	2E-7		0.025	[0.035-0.016] unit decrease	Illumina [12039491] (imputed)	N
1779	chr3	156535971	156535972	rs34052812	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Breast cancer	133,384 European ancestry cases, 113,789 European ancestry controls	NA	3q25.31	NR	rs34052812-A	0.67	3E-8		1.0416667	[1.02-1.05]	Illumina [~ 10800000] (imputed)	N
1779	chr3	156554567	156554568	rs344078	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q25.31	LEKR1	rs344078-C	0.829029	4E-53		0.0378865	[0.033-0.043] unit increase	NR [13737936] (imputed)	N
1779	chr3	156555983	156555984	rs344081	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q25.31		rs344081-?	NR	5E-64				NR [~ 8900000] (imputed)	N
1779	chr3	156555983	156555984	rs344081	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	3q25.31	LEKR1	rs344081-T	0.87	4E-12		0.06	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1779	chr3	156556311	156556312	rs344083	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs344083-?	NR	3E-66		0.0416144	[0.037-0.047] unit increase	Affymetrix [20259828] (imputed)	N
1779	chr3	156556311	156556312	rs344083	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LEKR1	rs344083-A	0.779488	7E-17	(men)	0.0464018	[0.034-0.058] unit increase	NR [17166351] (imputed)	N
1779	chr3	156556311	156556312	rs344083	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LEKR1	rs344083-A	0.779353	6E-23		0.0384516	[0.031-0.046] unit increase	NR [17166351] (imputed)	N
1779	chr3	156556311	156556312	rs344083	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LEKR1	rs344083-A	0.779235	8E-9	(women)	0.0330946	[0.022-0.044] unit increase	NR [17166351] (imputed)	N
1779	chr3	156568805	156568806	rs114953509	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q25.31	LEKR1	rs114953509-T	0.9788	5E-6		0.1253	[0.072-0.179] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1779	chr3	156609101	156609102	rs17382119	25656473	de With SA	2015-02-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of lymphoblast cell viability after clozapine exposure.	Clozapine-induced cytotoxicity	90 European ancestry lymphoblast cell lines	NA	3q25.31	LEKR1	rs17382119-?	NR	3E-6	(AUC)			NR [2092490]	N
1779	chr3	156626090	156626091	rs12638253	19010793	Baranzini SE	2008-11-14	Hum Mol Genet	Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis.	Multiple sclerosis (severity)	794 European ancestry cases, 883 European ancestry controls	NA	3q25.31	FLJ16641	rs12638253-?	0.47	2E-6			[NR]	Illumina [551642]	N
1780	chr3	156635512	156635513	rs2874490	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3q25.31	NR	rs2874490-T	0.1284	7E-11	(European)	0.0604	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
1780	chr3	156636203	156636204	rs62275802	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.31		rs62275802-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1780	chr3	156641795	156641796	rs62275807	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs62275807-?	NR	2E-29		0.0365578	[0.03-0.043] unit increase	Affymetrix [20259828] (imputed)	N
1780	chr3	156642633	156642634	rs7650127	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs7650127-?	NR	5E-67		0.0457915	[0.04-0.051] unit increase	Affymetrix [20259828] (imputed)	N
1780	chr3	156643384	156643385	rs6441103	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs6441103-?	NR	5E-67		0.0458084	[0.04-0.051] unit increase	Affymetrix [20259828] (imputed)	N
1780	chr3	156645756	156645757	rs7637701	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q25.31	NR	rs7637701-A	0.5108	1E-6	(EA)	0.03	[0.018-0.042] unit increase	Illumina [~ 11800000] (imputed)	N
1780	chr3	156675702	156675703	rs7615304	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 levels	3,475 Finnish ancestry individuals	NA	3q25.31	NR	rs7615304-G		1E-6		0.1172	[0.07-0.165] SD units increase	NR [10700000] (imputed)	N
1780	chr3	156683135	156683136	rs987724	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	3q25.31	LEKR1	rs987724-?	0.59	9E-6		1.4492754		Affymetrix, Illumina [14074516] (imputed)	N
1780	chr3	156692206	156692207	rs74394007	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	3q25.31	NR	rs74394007-A	0.862	2E-13		0.0608	unit increase	Affymetrix, Illumina [~ 23700000] (imputed)	N
1780	chr3	156697090	156697090	rs767487038	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs767487038-?	NR	3E-64		0.0533448	[0.047-0.06] unit increase	Affymetrix [20259828] (imputed)	N
1780	chr3	156698286	156698287	rs62275836	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs62275836-?	NR	1E-17		0.0318187	[0.025-0.039] unit increase	Affymetrix [20259828] (imputed)	N
1780	chr3	156728609	156728610	rs7616559	25898001	Dong C	2015-04-16	Atherosclerosis	Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: a genome-wide interaction study.	Carotid artery intima media thickness (sex interaction)	931 Hispanic individuals	153 European ancestry individuals, 257 Black individuals	3q25.31	LEKR1	rs7616559-G	0.29	1E-6	(Model 1)	0.035	[0.021-0.049] unit increase	Affymetrix [731037]	N
1780	chr3	156728609	156728610	rs7616559	25898001	Dong C	2015-04-16	Atherosclerosis	Genetic variants in LEKR1 and GALNT10 modulate sex-difference in carotid intima-media thickness: a genome-wide interaction study.	Carotid artery intima media thickness (sex interaction)	931 Hispanic individuals	153 European ancestry individuals, 257 Black individuals	3q25.31	LEKR1	rs7616559-G	0.26	4E-6	(Model 1, Hispanics)	0.04	[0.022-0.058] unit increase	Affymetrix [731037]	N
1780	chr3	156746698	156746699	rs1032042	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q25.31		rs1032042-G	0.29	3E-11		6.65	z score increase	Affymetrix [9061022] (imputed)	N
1780	chr3	156746698	156746699	rs1032042	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q25.31	NR	rs1032042-G	0.2705	3E-10				NR [9056863] (imputed)	N
1781	chr3	156764262	156764263	rs2220051	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3q25.31	LEKR1	rs2220051-T	0.34	2E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
1781	chr3	156770832	156770833	rs6774654	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q25.31		rs6774654-G	0.36	4E-10		6.26	z score increase	Affymetrix [9061022] (imputed)	N
1781	chr3	156791267	156791268	rs2321536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q25.31		rs2321536-T	0.428626	1E-14		0.01848081	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr3	156791267	156791268	rs2321536	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q25.31		rs2321536-T	0.428613	4E-16		0.019348394	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr3	156793906	156793907	rs73170826	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q25.31	NR	rs73170826-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156793906	156793907	rs73170826	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs73170826-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156794424	156794425	rs4680338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q25.31		rs4680338-G	NR	8E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
1781	chr3	156794424	156794425	rs4680338	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q25.31		rs4680338-G	NR	2E-17		0.0182	[0.014-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1781	chr3	156794424	156794425	rs4680338	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q25.31	NR	rs4680338-C	0.591551	1E-10		0.012523	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1781	chr3	156794424	156794425	rs4680338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q25.31		rs4680338-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q25.31		rs56406311-T	NR	3E-8		0.0111	[0.0072-0.015] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q25.31		rs56406311-T	NR	4E-18		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q25.31		rs56406311-T	NR	5E-12		0.0135	[0.0098-0.0172] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.31	LINC00880	rs56406311-T	NR	7E-34		0.0351903	[0.03-0.041] unit decrease	Affymetrix [319769] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs56406311-T	NR	6E-37		0.0368608	[0.031-0.043] unit decrease	Affymetrix [319769] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q25.31	NR	rs56406311-?	NR	2E-52				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156795407	156795408	rs56406311	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs56406311-?	NR	3E-51				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q25.31		rs9817452-T	NR	4E-16		0.0172	[0.013-0.021] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs9817452-T	NR	2E-44		0.0409711	[0.035-0.047] unit decrease	Affymetrix [321114] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs9817452-T	NR	1E-54		0.0456757	[0.04-0.051] unit decrease	Affymetrix [321169] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	3q25.31	LINC00880	rs9817452-T	NR	2E-11		0.0213077	[0.015-0.028] unit decrease	Affymetrix [323858] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q25.31	LEKR1	rs9817452-G	0.612583	3E-19		0.0184344	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q25.31	LEKR1	rs9817452-G	0.612311	7E-23		0.0193457	[0.015-0.023] unit decrease	Affymetrix [NR] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q25.31	LEKR1	rs9817452-G	0.612301	6E-18		0.0174723	[0.014-0.021] unit decrease	Affymetrix [NR] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q25.31	intergenic	rs9817452-?	NR	5E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix [5701386] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.31	intergenic	rs9817452-T	0.3753	4E-23		0.0292	[0.024-0.035] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1781	chr3	156795413	156795414	rs9817452	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.31	RP11-6F2.5	rs9817452-T	0.3746	7E-22		0.0283	[0.023-0.034] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q25.31		rs13322435-G	NR	3E-9		0.0117	[0.0078-0.0156] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q25.31		rs13322435-G	NR	1E-15		0.0155	[0.012-0.019] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	3q25.31	LEKR1	rs13322435-?	NR	7E-9		0.0013	[0.00071-0.00189] unit increase	Affymetrix [21347608] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	3q25.31	LEKR1	rs13322435-?	NR	7E-16		0.0032	[0.0024-0.004] unit increase	Affymetrix [21347608] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q25.31	NR	rs13322435-G	0.4039	2E-15		0.001779	[0.0013-0.0022] unit increase	Affymetrix [NR] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.31	NR	rs13322435-G	0.450758	9E-13				Affymetrix, Illumina [24332387] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q25.31	NR	rs13322435-G	0.406359	5E-13		0.013724	[0.01-0.0174] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q25.31	NR	rs13322435-G	0.407082	2E-22		0.018278	[0.015-0.022] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q25.31	NR	rs13322435-G	0.403729	2E-10		0.012657	[0.0088-0.0165] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Infant head circumference (MTAG)	up to 182,902 European ancestry individuals	NA	3q25.31	NR	rs13322435-A	0.5944	8E-11		0.07410833	[0.052-0.096] z score increase	NR [1977400] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	3q25.31	NR	rs13322435-A	0.6	6E-38		0.050210092	[0.043-0.058] unit increase	NR [1977400] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	3q25.31	NR	rs13322435-A	0.6	2E-27		0.06803593	[0.056-0.08] unit increase	NR [1977400] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Birth weight variance	197,758 European ancestry individuals	NA	3q25.31	CCNL1	rs13322435-?	NR	1E-9				NR [5554549] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Birth weight	197,758 European ancestry individuals	NA	3q25.31	CCNL1	rs13322435-?	NR	6E-48				NR [5554549] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	3q25.31	NR	rs13322435-A	0.41	1E-51		0.05	[0.044-0.056] z score increase	Affymetrix [up to 10400000] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q25.31		rs13322435-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q25.31		rs13322435-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1781	chr3	156795467	156795468	rs13322435	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	3q25.31	CCNL1, LEKR1	rs13322435-A	0.59	1E-42		0.0524	[0.045-0.06] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
1781	chr3	156797207	156797208	rs55730982	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q25.31	RP11-6F2.5	rs55730982-G	0.40086	6E-10		0.014043313	[0.0096-0.0185] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q25.31	RP11-6F2.5	rs56082403-C	0.40103	4E-10		0.014211708	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.31	NR	rs56082403-C	0.448707	2E-14				Affymetrix, Illumina [24649327] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q25.31	NR	rs56082403-C	0.404652	6E-15		0.014772	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.31	NR	rs56082403-C	0.432619	2E-13				Affymetrix, Illumina [23114412] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q25.31	NR	rs56082403-C	0.403508	5E-15		0.015453	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q25.31	NR	rs56082403-C	0.40139	8E-10		0.012678	[0.0086-0.0167] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs56082403-?	NR	3E-56		0.0322694	[0.028-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LINC00880	rs56082403-T	0.602237	3E-9	(women)	0.0291079	[0.019-0.039] unit increase	NR [17166351] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LINC00880	rs56082403-T	0.601327	2E-17		0.0303039	[0.023-0.037] unit increase	NR [17166351] (imputed)	N
1781	chr3	156797224	156797225	rs56082403	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	3q25.31	LINC00880	rs56082403-T	0.600286	3E-8	(men)	0.0295845	[0.019-0.04] unit increase	NR [17166351] (imputed)	N
1781	chr3	156797372	156797373	rs10049210	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	3q25.31		rs10049210-C	NR	8E-9		0.0636	[0.042-0.085] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	7E-7				Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	2E-6	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	9E-20				Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	8E-15	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	5E-17				Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	2E-13	(EA)			Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q25.31	LEKR1, LINC00880	rs17451107-C	NR	3E-7		0.004	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q25.31	NR	rs17451107-T	0.62	2E-56		0.029	[0.025-0.033] unit increase	Affymetrix [2446094] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q25.31	NR	rs17451107-T	0.62	5E-8				Affymetrix [2446094] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q25.31	NR	rs17451107-T	0.6169	2E-59		0.0288	[0.025-0.032] unit increase	NR [~ 27400000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6096	2E-8	(EA, women)	0.0299	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for body mass index	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6096	2E-11	(EA)	0.0281	[0.02-0.036] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6096	5E-10	(EA)	0.0298	[0.02-0.039] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI in active individuals	1,957 African American women, 1,421 Filipino ancestry women, 305 Indian ancestry women, 65,539 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 41,673 European ancestry men, 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6074	6E-7	(EA, women)	0.0308	[0.019-0.043] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-?	0.6096	6E-11	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist-to-hip ratio adjusted for BMI (joint analysis for main effect and physical activity interaction)	2,518 African American women, 83,707 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 52,993 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-?	0.6096	1E-7	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6139	6E-16		0.0297	[0.022-0.037] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6097	8E-13	(EA, women)	0.0368	[0.027-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6097	2E-14	(EA)	0.0303	[0.023-0.038] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6139	6E-12		0.03	[0.021-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q25.31	LEKR1	rs17451107-T	0.6075	6E-11	(EA,women)	0.0379	[0.027-0.049] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-?	0.6139	3E-14				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs17451107-?	0.6097	3E-12	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6131	4E-7	(women)	0.0238	[0.015-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist-to-hip ratio adjusted for BMI (adjusted for smoking behaviour)	95,362 European ancestry women, 62,085 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6131	2E-9		0.0214	[0.014-0.028] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	3E-13		0.0293	[0.021-0.037] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	3E-10	(women)	0.0324	[0.022-0.042] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	4E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	2E-11	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	6E-13		0.0263	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q25.31	LEKR1	rs17451107-T	0.6145	3E-12	(women)	0.0322	[0.023-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6211	2E-8	(men)	0.0281	[0.018-0.038] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6185	1E-8	(EA, men)	0.0295	[0.019-0.04] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6172	4E-11		0.0232	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6145	1E-12	(EA)	0.0256	[0.019-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.613	6E-6	(women)	0.0209	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-to-hip ratio adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.611	1E-6	(EA, women)	0.0232	[0.014-0.032] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6126	3E-7	(EA, men)	0.0261	[0.016-0.036] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6126	3E-6	(EA, women)	0.0214	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist-hip ratio	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6126	3E-11	(EA)	0.0232	[0.016-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6151	4E-12	(EA,women)	0.0322	[0.023-0.041] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q25.31	LEKR1	rs17451107-T	0.6151	1E-13	(EA)	0.0265	[0.019-0.034] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1781	chr3	156797608	156797609	rs17451107	23575227	Urbanek M	2013-04-10	Hum Mol Genet	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Anthropometric traits in newborns	1,095 Afro-Caribbean individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	LEKR1, CCNL1	rs17451107-T	0.55	6E-7	(Sum of skinfolds, Model 3, Thai)	0.0633	[NR] unit increase	Illumina [up to 3563305] (imputed)	N
1781	chr3	156797647	156797648	rs10049088	31589552	Lind L	2019-10-07	Metab Syndr Relat Disord	Genome-Wide Association Study of the Metabolic Syndrome in UK Biobank.	Metabolic syndrome	291,107 European ancestry individuals	NA	3q25.31	LINC00880	rs10049088-T	0.386891	5E-11		0.0443217	[0.031-0.058] unit decrease	Affymetrix [9463307] (imputed)	N
1781	chr3	156797647	156797648	rs10049088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q25.31		rs10049088-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1781	chr3	156797647	156797648	rs10049088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q25.31	NA	rs10049088-T	0.3814	1E-53		0.0271	[0.024-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1781	chr3	156797647	156797648	rs10049088	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q25.31	NR	rs10049088-T	0.3814	1E-53		0.0271	[0.024-0.031] unit decrease	NR [~ 27400000] (imputed)	N
1781	chr3	156797647	156797648	rs10049088	23575227	Urbanek M	2013-04-10	Hum Mol Genet	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Anthropometric traits in newborns	1,095 Afro-Caribbean individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	LEKR1, CCNL1	rs10049088-T	0.45	9E-6	(Fat mass, Model 3, Thai)	0.522	[NR] unit decrease	Illumina [up to 3563305] (imputed)	N
1781	chr3	156797940	156797941	rs67261871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q25.31		rs67261871-C	NR	2E-10		0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
1781	chr3	156797940	156797941	rs67261871	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q25.31	LINC00880	rs67261871-T	0.604193	1E-15		0.00317079	[0.0024-0.004] unit decrease	Affymetrix [13995440] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.31	NR	rs1482852-G	0.448778	1E-23				Affymetrix, Illumina [24588908] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	3q25.31	LOC339894, CCNL1	rs1482852-A	0.598589	2E-13		0.022763	[0.017-0.029] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q25.31	LOC339894, CCNL1	rs1482852-A	0.598612	2E-82		0.050395	[0.045-0.056] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q25.31		rs1482852-?	NR	5E-53				NR [~ 8900000] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q25.31	LEKR1	rs1482852-A	0.5944	2E-12	(EA)	0.0312	[0.023-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q25.31	LEKR1	rs1482852-?	0.5944	2E-13	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI x sex x age interaction (4df test)	up to 43,776 European ancestry men aged <50, up to 50,526 European ancestry women aged <50, up to 69,944 European ancestry men aged >50, up to 88,129 European ancestry women aged >50	NA	3q25.31	NR	rs1482852-A	0.597302751052095	4E-12				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156798293	156798294	rs1482852	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Waist-to-hip ratio adjusted for BMI	up to 113,720 European ancestry men, up to 138,655 European ancestry women	NA	3q25.31	NR	rs1482852-A	0.597302751052095	6E-14		0.026141942	units increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1781	chr3	156798472	156798473	rs1482853	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q25.31		rs1482853-A	NR	5E-9		0.0102	[0.0069-0.0135] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
1781	chr3	156798472	156798473	rs1482853	23575227	Urbanek M	2013-04-10	Hum Mol Genet	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Anthropometric traits in newborns	1,095 Afro-Caribbean individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	LEKR1, CCNL1	rs1482853-C	0.620	4E-9	(Birthweight, Model 2)	43.2	[20.86-65.54] unit increase	Illumina [up to 3563305] (imputed)	N
1781	chr3	156798472	156798473	rs1482853	23575227	Urbanek M	2013-04-10	Hum Mol Genet	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Anthropometric traits in newborns	1,095 Afro-Caribbean individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	LEKR1, CCNL1	rs1482853-C	0.620	2E-13	(Fat Mass, Model 2)	0.438	[0.26-0.62] unit increase	Illumina [up to 3563305] (imputed)	N
1781	chr3	156798472	156798473	rs1482853	23575227	Urbanek M	2013-04-10	Hum Mol Genet	The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.	Anthropometric traits in newborns	1,095 Afro-Caribbean individuals, 1,363 European ancestry individuals, 616 Mexican American individuals, 1,207 Thai ancestry individuals	2,296 European ancestry individuals	3q25.31	CCNL1, LEKR1	rs1482853-C	0.620	3E-19	(Sum of Skinfolds, Model 2)	0.055	[0.035-0.075] unit increase	Illumina [up to 3563305] (imputed)	N
1781	chr3	156798731	156798732	rs900399	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q25.31		rs900399-A	0.6028	1E-9		0.13110903	[0.087-0.176] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1781	chr3	156798731	156798732	rs900399	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals, 21,077 African American individuals, 33,689 South Asian ancestry individuals, 4,586 Hispanic individuals	354,096 European ancestry individuals, 63,282 African American individuals, 4,792 East Asian ancestry individuals, 22,802 Hispanic individuals, 2,695 Native American ancestry individuals	3q25.31		rs900399-A	0.6056	3E-8		0.075628124	[0.045-0.106] mmHg increase	Affymetrix, Illumina [247315] (imputed)	N
1781	chr3	156798731	156798732	rs900399	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q25.31	LINC02029	rs900399-A	0.6014	1E-17		0.0164	[0.013-0.02] unit decrease	Affymetrix [18391927] (imputed)	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		3q25.31	CCNL1	rs900399-G	0.389	5E-10		0.041	[0.027-0.055] unit decrease	Illumina [232237]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	56,708 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		3q25.31	CCNL1	rs900399-G	0.389	4E-6		0.057	[0.033-0.081] unit decrease	Illumina [92057]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	49,830 European ancestry individuals		3q25.31	CCNL1	rs900399-G	0.396	9E-9		0.04	[0.026-0.054] unit decrease	Illumina [204609]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		3q25.31	CCNL1	rs900399-G	0.391	2E-7		0.083	[0.052-0.114] unit decrease	Illumina [86054]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	32,886 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		3q25.31	CCNL1	rs900399-G	0.391	1E-10		0.054	[0.038-0.07] unit decrease	Illumina [227473]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		3q25.31	CCNL1	rs900399-G	0.398	9E-7		0.085	[0.052-0.118] unit decrease	Illumina [49530]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels adjusted for BMI	27,947 European ancestry women		3q25.31	CCNL1	rs900399-G	0.398	3E-10		0.058	[0.04-0.076] unit decrease	Illumina [193169]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	56,802 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American individuals		3q25.31	CCNL1	rs900399-G	0.389	3E-8		0.036	[0.022-0.05] unit decrease	Illumina [232255]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	49,909 European ancestry individuals		3q25.31	CCNL1	rs900399-G	0.396	2E-6		0.033	[0.019-0.047] unit decrease	Illumina [204641]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	32,940 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American women		3q25.31	CCNL1	rs900399-G	0.391	6E-9		0.049	[0.033-0.065] unit decrease	Illumina [227495]	N
1781	chr3	156798731	156798732	rs900399	32917775	Yaghootkar H	2020-09-11	Diabetes	Genetic Studies of Leptin Concentrations Implicate Leptin in the Regulation of Early Adiposity.	circulating leptin levels	27,987 European ancestry women		3q25.31	CCNL1	rs900399-G	0.397	3E-7		0.048	[0.03-0.066] unit decrease	Illumina [193201]	N
1781	chr3	156798731	156798732	rs900399	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body fat percentage variance	341,632 European ancestry individuals	NA	3q25.31	CCNL1	rs900399-?	NR	2E-9				NR [5554549] (imputed)	N
1781	chr3	156798731	156798732	rs900399	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	3q25.31	LEKR1	rs900399-G	0.37553040030985	1E-8		0.034423664	unit increase	Illumina [265780]	N
1781	chr3	156798731	156798732	rs900399	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q25.31	LINC00880	rs900399-A	0.602879	6E-42		0.0257855	[0.022-0.03] unit increase	NR [13737936] (imputed)	N
1781	chr3	156798731	156798732	rs900399	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	3q25.31	NR	rs900399-A	0.6062	2E-59		0.0286	[0.025-0.032] unit increase	NR [~ 27400000] (imputed)	N
1781	chr3	156798731	156798732	rs900399	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	3q25.31	NR	rs900399-A	0.6062	2E-53		0.0267	[0.023-0.03] unit increase	NR [~ 27400000] (imputed)	N
1781	chr3	156798731	156798732	rs900399	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q25.31		rs900399-?	NR	1E-55		0.0320278	[0.028-0.036] unit increase	Affymetrix [20259828] (imputed)	N
1781	chr3	156798731	156798732	rs900399	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	Triglyceride levels	up to 237,050 European ancestry individuals	NA	3q25.31	NR	rs900399-G	0.4	3E-7		0.016	unit decrease	Illumina [242289]	N
1781	chr3	156798731	156798732	rs900399	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	3q25.31	LOC100498859	rs900399-G	NR	6E-32		0.023621786	[0.02-0.028] unit increase	Illumina [242289]	N
1781	chr3	156798731	156798732	rs900399	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	3q25.31	NR	rs900399-G	0.4	2E-12		0.021	unit increase	Illumina [242289]	N
1781	chr3	156798774	156798775	rs900400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	3q25.31	LINC00880	rs900400-C	NR	7E-15		0.0247916	[0.019-0.031] unit decrease	Affymetrix [323858] (imputed)	N
1781	chr3	156798774	156798775	rs900400	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	3q25.31	LINC00880	rs900400-C	NR	8E-15		0.0247363	[0.018-0.031] unit decrease	Affymetrix [127266] (imputed)	N
1781	chr3	156798774	156798775	rs900400	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3q25.31	intergenic	rs900400-?	0.41159999999999997	5E-18		0.97	[0.96-0.97]	Affymetrix, Illumina [8494288] (imputed)	N
1781	chr3	156798774	156798775	rs900400	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q25.31	LEKR1, CCNL1	rs900400-C	0.4	6E-13		7.2	z-score increase	Affymetrix [4312306] (imputed)	N
1781	chr3	156798774	156798775	rs900400	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q25.31	NR	rs900400-C	0.398823	2E-11		0.012904	[0.0092-0.0167] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1781	chr3	156798774	156798775	rs900400	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q25.31		rs900400-?	NR	4E-55				NR [~ 8900000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	28317342	Hivert MF	2017-03-20	Obesity (Silver Spring)	Genetic determinants of adiponectin regulation revealed by pregnancy.	Adiponectin levels in pregnancy	1,322 European ancestry individuals	522 European ancestry individuals, 174 French Canadian founder individuals	3q25.31	CCNL1, LEKR1	rs900400-T	0.61	1E-7		0.179	[0.11-0.25] unit decrease	Illumina [NR]	N
1781	chr3	156798774	156798775	rs900400	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	3q25.31	CCNL1	rs900400-T	0.6	9E-6	(women)	0.023	[0.013-0.033] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels adjusted for BMI	up to 14,094 European ancestry men, up to 19,893 European ancestry women	up to 9,076 European ancestry men, up to 9,150 European ancestry women	3q25.31	CCNL1	rs900400-T	0.6	1E-7		0.021	[0.013-0.029] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	3q25.31	CCNL1	rs900400-T	0.6	6E-9		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	26833098	Kilpelainen TO	2016-02-01	Nat Commun	Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.	circulating leptin levels	14,586 European ancestry men, 20,706 European ancestry women	8,554 European ancestry men, 8,337 European ancestry women	3q25.31	CCNL1	rs900400-T	0.6	3E-6	(women)	0.032	[0.018-0.046] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q25.31	LEKR1, CCNL1	rs900400-T	0.61	2E-11		0.03	[0.02-0.04] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1781	chr3	156798774	156798775	rs900400	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	3q25.31	CCNL1	rs900400-C	0.39	4E-38		0.072	[0.060-0.084] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
1781	chr3	156798774	156798775	rs900400	20372150	Freathy RM	2010-04-06	Nat Genet	Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.	Birth weight	10,623 European ancestry individuals	27,591 European ancestry individuals, 1,415 Filipino ancestry individuals, 746 North African ancestry individuals, 333 Turkish ancestry individuals	3q25.31	LEKR1, CCNL1	rs900400-C		2E-35		0.09	[0.073-0.10] s.d. decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1781	chr3	156811901	156811902	rs1552193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1552193-G	NR	2E-10		0.0224374	[0.016-0.029] unit increase	Affymetrix [321114] (imputed)	N
1781	chr3	156811901	156811902	rs1552193	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1552193-G	NR	6E-12		0.024272	[0.017-0.031] unit increase	Affymetrix [321169] (imputed)	N
1781	chr3	156811901	156811902	rs1552193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q25.31	NR	rs1552193-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156811901	156811902	rs1552193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs1552193-?	NR	1E-13				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156817039	156817040	rs1994125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1994125-A	NR	1E-8		0.0167091	[0.011-0.022] unit decrease	Affymetrix [319769] (imputed)	N
1781	chr3	156817039	156817040	rs1994125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1994125-A	NR	2E-9		0.017582	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1781	chr3	156817039	156817040	rs1994125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1994125-A	NR	1E-11		0.0200539	[0.014-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1781	chr3	156817039	156817040	rs1994125	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.31	LINC00880, LINC00881	rs1994125-A	NR	7E-14		0.0221709	[0.016-0.028] unit decrease	Affymetrix [321169] (imputed)	N
1781	chr3	156817039	156817040	rs1994125	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q25.31	NR	rs1994125-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156819344	156819345	rs931244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs931244-T	NR	1E-9		0.0209328	[0.014-0.028] unit decrease	Affymetrix [321114] (imputed)	N
1781	chr3	156819344	156819345	rs931244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs931244-T	NR	7E-12		0.0236075	[0.017-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1781	chr3	156821807	156821808	rs6441111	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q25.31	CCNL1	rs6441111-C	0.5087	1E-51		0.9675	[0.84-1.09] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1781	chr3	156821807	156821808	rs6441111	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3q25.31	CCNL1	rs6441111-C	0.52	7E-11		0.8	[0.55-1.05] ms increase	Affymetrix, Illumina [2712613] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	9E-17	(-90 ms)	0.0472802	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	7E-19	(-170 ms)	0.0505412	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	7E-17	(-174 ms)	0.0479531	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	6E-20	(-162 ms)	0.0519698	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	5E-20	(-164 ms)	0.0521131	[0.041-0.063] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	4E-8	(-198 ms)	0.0311429	[0.02-0.042] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	4E-19	(-166 ms)	0.0509594	[0.04-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	4E-18	(-172 ms)	0.0498956	[0.039-0.061] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	4E-17	(-178 ms)	0.04824	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	4E-10	(-76 ms)	0.0358481	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	3E-9	(-150 ms)	0.0339631	[0.023-0.045] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	3E-16	(-176 ms)	0.0469856	[0.036-0.058] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	3E-14	(-182 ms)	0.0437209	[0.033-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	3E-13	(-186 ms)	0.0418421	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	3E-13	(-184 ms)	0.0421646	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-9	(-74 ms)	0.0341255	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-8	(-72 ms)	0.0319774	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-8	(-148 ms)	0.0318341	[0.021-0.043] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-17	(-92 ms)	0.0482622	[0.037-0.059] unit decrease	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-15	(-158 ms)	0.0451575	[0.034-0.056] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-14	(-156 ms)	0.0433647	[0.032-0.055] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-13	(-154 ms)	0.0417998	[0.031-0.053] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-12	(-188 ms)	0.0402002	[0.029-0.051] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	2E-11	(-152 ms)	0.0380499	[0.027-0.049] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	1E-18	(-168 ms)	0.050405	[0.039-0.062] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	1E-17	(-160 ms)	0.048543	[0.037-0.06] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827226	156827227	rs11928162	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.31	CCNL1	rs11928162-C	0.522735	1E-16	(-180 ms)	0.0476645	[0.037-0.059] unit increase	Affymetrix [10000000] (imputed)	N
1781	chr3	156827954	156827955	rs12639276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs12639276-T	NR	3E-12		0.0243682	[0.018-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1781	chr3	156827954	156827955	rs12639276	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs12639276-T	NR	3E-11		0.0232635	[0.016-0.03] unit decrease	Affymetrix [321169] (imputed)	N
1781	chr3	156827954	156827955	rs12639276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs12639276-?	NR	2E-14				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156836905	156836906	rs7624327	22911880	Boraska V	2012-08-22	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.	Eating disorders	Up to 2,567 European ancestry individuals	Up to 767 European ancestry cases, up to 486  European ancestry controls	3q25.31	LEKR1, CCNL1	rs7624327-A	0.098	3E-6	(Bulimia)	1.13	[1.06-1.16]	Illumina [283744]	N
1781	chr3	156840372	156840373	rs78296750	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		LINC00880	rs78296750-?	NR	3E-10	(female)	0.575685	[NR] unit increase	Affymetrix [NR] (imputed)	N
1781	chr3	156852140	156852141	rs4368453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	LINC00880	rs4368453-T	NR	4E-10		0.0194963	[0.013-0.026] unit decrease	Affymetrix [321114] (imputed)	N
1781	chr3	156852140	156852141	rs4368453	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3q25.31	NR	rs4368453-T	0.301677	4E-9		0.0170734	[0.012-0.023] unit increase	Affymetrix [16585745] (imputed)	N
1781	chr3	156852591	156852592	rs4266144	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q25.31	intergenic	rs4266144-C	0.6774	1E-8		0.0346	[0.023-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1781	chr3	156852591	156852592	rs4266144	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q25.31	intergenic	rs4266144-C	0.674	3E-8		0.038	[0.024-0.052] unit decrease	Affymetrix [7947838] (imputed)	N
1781	chr3	156852942	156852943	rs4561781	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q25.31	LINC00880, CCNL1	rs4561781-?	NR	3E-11		0.0355131	[0.025-0.046] unit increase	Illumina [4804024] (imputed)	N
1781	chr3	156854741	156854742	rs13064954	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	3q25.31	CCNL1	rs13064954-A	0.05	5E-6		1.94		Illumina [~ 6300000] (imputed)	N
1781	chr3	156854741	156854742	rs13064954	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	3q25.31	LEKR1, CCNL1	rs13064954-G	0.04	7E-7		1.02	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1781	chr3	156861459	156861460	rs4680340	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.31		rs4680340-?	NR	8E-29				NR [~ 8900000] (imputed)	N
1781	chr3	156862040	156862041	rs6809307	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q25.31	NA	rs6809307-T	0.259	8E-13		0.0139	[0.01-0.018] unit increase	NR [~ 27400000] (imputed)	N
1781	chr3	156862144	156862145	rs6809394	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death or father's attained age)	up to 699,000 European ancestry individuals	NA	3q25.31	NR	rs6809394-G		7E-6				Illumina [458865]	N
1781	chr3	156880687	156880688	rs4383468	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.31	NR	rs4383468-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1781	chr3	156880687	156880688	rs4383468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q25.31		rs4383468-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1781	chr3	156881391	156881392	rs12630209	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q25.31	CCNL1	rs12630209-T	0.747146	3E-8		0.00874566	[0.0057-0.0118] unit decrease	Affymetrix [12370749]	N
1782	chr3	156915088	156915089	rs78086267	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q25.31	NR	rs78086267-A	NR	2E-8		0.032	unit increase	Affymetrix [at least 7091467] (imputed)	N
1782	chr3	156915088	156915089	rs78086267	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Triglycerides	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q25.31	NR	rs78086267-A	0.843	4E-7	(EA)	0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
1782	chr3	156919137	156919138	rs16827308	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q25.31	NR	rs16827308-T	0.3	4E-8		0.0109	[0.0069-0.0149] unit increase	NR [NR]	N
1782	chr3	156934479	156934480	rs66937127	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q25.31	RP11-550I24.2	rs66937127-T	0.130765	2E-9		0.023685277	[0.016-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1782	chr3	156947526	156947527	rs73154660	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in low alcohol consumption	8,716 individuals	NA	3q25.31	NR	rs73154660-?	NR	9E-7		0.1677	[0.1-0.23] unit increase	Illumina [~ 7800000] (imputed)	N
1782	chr3	156950578	156950579	rs9866141	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	3q25.31	VEPH1	rs9866141-T	0.06	8E-6		1.88		Illumina [~ 6300000] (imputed)	N
1782	chr3	156950578	156950579	rs9866141	21441570	Grassi MA	2011-03-26	Hum Mol Genet	Genome-wide meta-analysis for severe diabetic retinopathy.	Diabetic retinopathy	973 European ancestry cases, 1,856 European ancestry controls	NA	3q25.31	KRT18P34, VEPH1	rs9866141-T	0.04	9E-7		1.02	[NR]	Affymetrix, Illumina [2543887] (imputed)	N
1782	chr3	156954076	156954077	rs9289979	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs9289979-?	NR	6E-10				Affymetrix [~ 8270000] (imputed)	N
1782	chr3	156959262	156959263	rs4680347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.31	RP11-550I24.2	rs4680347-G	NR	1E-8		0.0179241	[0.012-0.024] unit decrease	Affymetrix [321114] (imputed)	N
1782	chr3	156983741	156983742	rs10513507	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q25.31	VEPH1, LOC101928236	rs10513507-C	0.339608	5E-7		1.04	[1.02-1.06]	NR [8126035] (imputed)	N
1782	chr3	157001603	157001604	rs872652	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.31	NR	rs872652-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1783	chr3	157039721	157039722	rs62281384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q25.32	RP11-550I24.2, VEPH1	rs62281384-A	NR	3E-9		0.0278015	[0.019-0.037] unit decrease	Affymetrix [321114] (imputed)	N
1783	chr3	157103678	157103679	rs60515336	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	3q25.32		rs60515336-T	0.044	2E-15		0.2149	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1783	chr3	157147567	157147568	rs2120243	26870257	Qu LS	2015-11-23	Oncol Lett	Nine susceptibility loci for hepatitis B virus-related hepatocellular carcinoma identified by a pilot two-stage genome-wide association study.	Hepatocellular carcinoma in hepatitis B infection	50 Han Chinese ancestry seropositive cases, 50 Han Chinese ancestry seropositive controls	282 Han Chinese ancestry seropositive cases, 278 Han Chinese ancestry seropositive controls	3q25.32	VEPH1	rs2120243-?	NR	2E-6		1.76	1.39-2.22	Affymetrix [279757]	N
1784	chr3	157186677	157186678	rs4679796	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q25.32	VEPH1	rs4679796-?		8E-6				Illumina [4322238] (imputed)	N
1784	chr3	157204597	157204598	rs9859018	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Pentraxin-related protein PTX3 levels	21,758 European ancestry individuals	9,173 individuals	3q25.32		rs9859018-A	0.28	1E-9		0.0743	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1785	chr3	157318256	157318257	rs4395360	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q25.32	C3orf55	rs4395360-C	0.387	4E-6		0.016	[0.0093-0.0235] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1785	chr3	157318256	157318257	rs4395360	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q25.32	C3orf55	rs4395360-C	0.383	4E-6	(EA)	0.017	[0.0099-0.0247] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1785	chr3	157347639	157347640	rs2649734	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	3q25.32	PQLC2L, SHOX2	rs2649734-A	0.611	6E-6		1.41	[1.22-1.62]	Affymetrix [up to 27494467] (imputed)	N
1785	chr3	157347639	157347640	rs2649734	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3q25.32	CCNL1, VEPH1, PTX3, SHOX2, RSRC1	rs2649734-A	0.622532577301987	4E-8		0.016696025	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1785	chr3	157371850	157371851	rs6771521	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.32	NR	rs6771521-A	0.871	1E-12		0.0114722	[0.0083-0.0146] unit increase	NR [9732723] (imputed)	N
1785	chr3	157393769	157393770	rs963354	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	3q25.32	C3orf55	rs963354-A	0.672	7E-9		0.0141	[0.0093-0.0189] unit increase	Illumina [~ 250000] (imputed)	N
1785	chr3	157393769	157393770	rs963354	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q25.32	NR	rs963354-A	0.687	4E-8	(Conditioned on chr3:159048333, chr3:158284861)	0.015048863	[0.0097-0.0204] unit increase	NR [~ 10000000] (imputed)	N
1785	chr3	157404328	157404329	rs4680392	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	3q25.32	PQLC2L	rs4680392-T	0.328	4E-9		0.013638121	[0.0091-0.0182] unit decrease	Affymetrix [11514654] (imputed)	N
1785	chr3	157412245	157412246	rs9842947	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	3q25.32		rs9842947-C	0.326	3E-9		0.013	[0.0091-0.0169] unit decrease	Affymetrix [up to 90000000] (imputed)	N
1785	chr3	157412245	157412246	rs9842947	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q25.32		rs9842947-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1786	chr3	157482915	157482916	rs792736	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 3)	4,680 European ancestry individuals	3,566 European ancestry individuals	3q25.32		rs792736-C	0.375267208	1E-16				Illumina [7417619] (imputed)	N
1786	chr3	157493951	157493952	rs4585149	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	3q25.32		rs4585149-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1786	chr3	157493951	157493952	rs4585149	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q25.32	NR	rs4585149-T	NR	7E-11		6.52	z score decrease	Affymetrix [10847151] (imputed)	N
1786	chr3	157493951	157493952	rs4585149	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q25.32	NR	rs4585149-T	0.177069	7E-9		5.79	z score decrease	NR [10847151] (imputed)	N
1786	chr3	157493951	157493952	rs4585149	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	3q25.32	RSRC1, SHOX2	rs4585149-T	0.17706999999999995	2E-9		5.979	z score decrease	Illumina [18485882] (imputed)	N
1786	chr3	157499185	157499186	rs1872981	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q25.32	NR	rs1872981-G	0.438659	5E-11		0.0203528	[0.014-0.026] unit decrease	NR [19129689] (imputed)	N
1786	chr3	157509193	157509194	rs10222405	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q25.32		rs10222405-A	0.48	1E-10		6.41	z score increase	Affymetrix [9061022] (imputed)	N
1786	chr3	157510696	157510701	rs67922471	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	3q25.32	C3orf55, SHOX2	rs67922471-?	NR	1E-15		0.029	[0.036-0.022] unit decrease	Illumina [12039491] (imputed)	N
1786	chr3	157515626	157515627	rs3845980	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q25.32	NR	rs3845980-T	NR	2E-9		6.018	z score decrease	Affymetrix [10847151] (imputed)	N
1787	chr3	157548789	157548790	rs9844263	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	3q25.32		rs9844263-G	0.12186	7E-6		0.046783	[0.026-0.067] unit increase	Affymetrix [15580782] (imputed)	N
1787	chr3	157549621	157549622	rs139873132	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.32	Intergenic	rs139873132-T	0.984	1E-6	(AA)	0.337	NR unit decrease	Illumina [NR] (imputed)	N
1787	chr3	157576790	157576791	rs9833313	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q25.32	SHOX2	rs9833313-A	0.241	2E-8		0.1154	[0.075-0.156] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1787	chr3	157581466	157581467	rs9841945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q25.32		rs9841945-?	NR	7E-8				NR [~ 8900000] (imputed)	N
1787	chr3	157581466	157581467	rs9841945	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.32		rs9841945-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1787	chr3	157609801	157609802	rs1515464	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q25.32		rs1515464-?	NR	8E-12				NR [~ 8900000] (imputed)	N
1788	chr3	157685648	157685648	rs759623919	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.32	SHOX2	rs759623919-G	0.845438	1E-8	(140 ms)	0.0481614	[0.032-0.064] unit increase	Affymetrix [10000000] (imputed)	N
1788	chr3	157686456	157686457	rs9818941	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3q25.32	SHOX2	rs9818941-A	0.45	4E-7		0.028	[0.016-0.04] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1788	chr3	157703587	157703588	rs7433420	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q25.32		rs7433420-C	0.483457	1E-10		0.0128642	[0.0089-0.0168] unit decrease	Illumina [13479295] (imputed)	N
1788	chr3	157721818	157721819	rs111867612	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q25.32	C3orf55, SHOX2	rs111867612-C	0.8979	4E-8		1.0325176		Affymetrix [11880941] (imputed)	N
1788	chr3	157725241	157725242	rs7427551	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q25.32		rs7427551-T	NR	1E-28		0.0155	[0.013-0.018] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1788	chr3	157784215	157784216	rs2686544	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q25.32	PQLC2L, SHOX2	rs2686544-?	NR	7E-17		0.023695756	[0.018-0.029] unit decrease	Illumina [27896057] (imputed)	N
1789	chr3	157815216	157815217	rs1608113	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3q25.32	NR	rs1608113-T	0.367960755616908	3E-8		0.0071654697	[0.0046-0.0097] unit increase	NR [NR]	N
1789	chr3	157815460	157815461	rs1048243	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q25.32	SHOX2	rs1048243-A	0.635	3E-14		0.0149	[0.011-0.019] unit decrease	Affymetrix [18391927] (imputed)	N
1789	chr3	157823908	157823909	rs75077515	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	3q25.32	SHOX2	rs75077515-C	0.034144918	7E-6		1.5755453	[1.29269826-1.920280269]	Illumina [10439017] (imputed)	N
1789	chr3	157828321	157828322	rs11713363	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	3q25.32	RSRC1	rs11713363-?	NR	2E-12		1.1235955	[1.09-1.16]	Illumina [13537761] (imputed)	N
1789	chr3	157829898	157829899	rs115344825	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	3q25.32		rs115344825-A	NR	1E-6		1.2876642	[1.19-1.39]	Illumina [11600722] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3q25.32	RSRC1	rs201851995-?	NR	9E-10	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3q25.32	RSRC1	rs201851995-?	NR	5E-12				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3q25.32	RSRC1	rs201851995-?	NR	4E-11				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3q25.32	RSRC1	rs201851995-?		5E-9	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3q25.32	RSRC1	rs201851995-?	NR	2E-8				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	3q25.32	RSRC1	rs201851995-?	NR	2E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3q25.32	RSRC1	rs201851995-?	NR	6E-7	(EA)			Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157837508	157837512	rs201851995	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (current vs non-current) interaction (2df test)	14,607 European ancestry current smokers, 65,935 European ancestry former and never smokers, 5,545 African ancestry current smokers, 21,571 African ancestry former and never smokers, 2,465 Asian ancestry current smokers, 10,973 Asian ancestry former and never smokers, 1,068 Hispanic current smokers, 7,737 Hispanic former and never smokers	48,198 European ancestry current smokers, 251,872 European ancestry former and never smokers, 1,971 African ancestry current smokers, 5,814 African ancestry former and never smokers, 29,485 Asian ancestry current smokers, 119,447 Asian ancestry former and never smokers, 3,737 Hispanic current smokers, 14,199 Hispanic former and never smokers	3q25.32	RSRC1	rs201851995-?	NR	4E-8				Affymetrix, Illumina [18800000] (imputed)	N
1789	chr3	157845168	157845169	rs9860241	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q25.32		rs9860241-A	NR	4E-12		0.0133	[0.0096-0.017] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1789	chr3	157856145	157856146	rs1589526	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Autism spectrum disorder (MTAG)	60,817 individuals	NA	3q25.32	NR	rs1589526-?		2E-8				NR [520857]	N
1789	chr3	157856420	157856421	rs4318510	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	3q25.32	NR	rs4318510-?		2E-11				NR [520857]	N
1789	chr3	157857109	157857110	rs6441175	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms	688,809 individuals	NA	3q25.32	NR	rs6441175-?		2E-9				NR [11140414]	N
1789	chr3	157857109	157857110	rs6441175	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3q25.32	NR	rs6441175-A	NR	2E-9		6.039	z score decrease	Affymetrix [10847151] (imputed)	N
1789	chr3	157878386	157878387	rs6762154	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q25.32		rs6762154-?	NR	6E-8				NR [~ 8900000] (imputed)	N
1789	chr3	157887271	157887272	rs9857883	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q25.32	NA	rs9857883-A	0.6042	2E-12		0.0116	[0.0085-0.0147] unit increase	NR [~ 27400000] (imputed)	N
1789	chr3	157898692	157898693	rs75936762	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function in heavy smokers (high FEV1 vs average FEV1)	4,906 European ancestry individuals with high FEV1 measurements, 9,803 European ancestry individuals with average FEV1 measurements	NA	3q25.32	RSRC1	rs75936762-A	0.699	2E-7		1.1547344	[1.09-1.22]	Affymetrix [28509962] (imputed)	N
1789	chr3	157900788	157900789	rs1730028	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q25.32		rs1730028-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1789	chr3	157902395	157902396	rs1724725	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3q25.32	NR	rs1724725-A	NR	1E-8		0.02748	[0.018-0.037] unit decrease	Affymetrix [10847151] (imputed)	N
1789	chr3	157920265	157920266	rs827803	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q25.32	RSRC1	rs827803-G	0.434419	1E-8		0.00786618	[0.0052-0.0106] unit increase	Affymetrix [12370749]	N
1789	chr3	157931836	157931837	rs699929	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q25.32		rs699929-A	0.44	2E-8				NR [NR] (imputed)	N
1789	chr3	157931836	157931837	rs699929	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q25.32		rs699929-A	0.44	6E-12		0.01	% increase	NR [NR] (imputed)	N
1789	chr3	157932226	157932227	rs699927	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Major depressive disorder (MTAG)	at least 170,756 European ancestry cases, at least 329,443 European ancestry controls	NA	3q25.32	NR	rs699927-T	0.5829	3E-8		0.023508085	[0.015-0.032] unit decrease	NR [NR]	N
1789	chr3	157932829	157932830	rs35547463	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q25.32	NR	rs35547463-?	NR	7E-12				Illumina [at least 7383741] (imputed)	N
1789	chr3	157933482	157933483	rs73874335	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q25.32		rs73874335-T	0.0607	1E-9		0.0178	[0.012-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1789	chr3	157933482	157933483	rs73874335	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q25.32	Intergenic	rs73874335-T	0.0607	4E-10	(MTAG)	0.0172	[0.012-0.022] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1790	chr3	157946850	157946851	rs144943143	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Subjective well-being (MTAG)	388,538 European ancestry individuals	NA	3q25.32	NR	rs144943143-A	0.5753	3E-10		0.0118	[0.0081-0.0155] unit decrease	Illumina [NR] (imputed)	N
1790	chr3	157950880	157950881	rs827123	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q25.32	NR	rs827123-C	0.579655074316262	9E-11		0.0060263826	[0.0042-0.0079] unit increase	NR [NR]	N
1790	chr3	157953428	157953429	rs1724679	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q25.32		rs1724679-G	0.376	4E-11		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1790	chr3	157954917	157954918	rs1730054	31835028	Cross-Disorder Group of the Psychiatric Genomics Consortium	2019-12-01	Cell	Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders.	Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy)	19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls	NA	3q25.32	RSRC1	rs1730054-?		6E-10				NR [6786993] (imputed)	N
1790	chr3	157974442	157974443	rs7618071	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q25.32	NR	rs7618071-C	0.637	3E-10		0.00956254	[0.0066-0.0125] unit decrease	NR [9732723] (imputed)	N
1790	chr3	157977961	157977962	rs1095626	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	3q25.32	NR	rs1095626-C	0.4201	6E-39		1.0288066	[1.02-1.03]	NR [8098588] (imputed)	N
1790	chr3	157989978	157989979	rs1213048	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3q25.32	NR	rs1213048-C	0.418331609808311	1E-11		0.010157996	[0.0072-0.0131] unit increase	NR [NR]	N
1790	chr3	158001683	158001683	rs200332011	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	3q25.32	Intergenic	rs200332011-C	0.769	6E-6		1.0775862	[NR]	Illumina [9112387] (imputed)	N
1790	chr3	158009476	158009477	rs13066362	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q25.32	NR	rs13066362-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1790	chr3	158017858	158017859	rs1526194	32989287	Cuellar-Partida G	2020-09-28	Nat Hum Behav	Genome-wide association study identifies 48 common genetic variants associated with handedness.	Left-handedness	1,766,671 European ancestry individuals	NA	3q25.32	RSRC1	rs1526194-T	0.5789	3E-11		0.9765798	[NR]	Illumina [12493444] (imputed)	N
1790	chr3	158026488	158026489	rs2682406	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q25.32	NA	rs2682406-A	0.4117	5E-13		0.0126	[0.0093-0.0159] unit decrease	NR [~ 27400000] (imputed)	N
1790	chr3	158028485	158028486	rs1210358	29728651	Li X	2018-04-27	Neuropsychopharmacology	Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.	Major depressive disorder	84,847 European ancestry cases,  241,266 European ancestry controls, 5,303 Han Chinese ancestry cases, 5,337 Han Chinese ancestry controls	2,659 European ancestry cases, 17,237 European ancestry controls	3q25.32	NR	rs1210358-A	0.615	9E-8		1.0319917	[NR]	Affymetrix, Illumina [at least 1235109] (imputed)	N
1790	chr3	158030961	158030962	rs1730040	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q25.32		rs1730040-?	NR	1E-39				NR [~ 8900000] (imputed)	N
1790	chr3	158035908	158035909	rs1730008	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q25.32	NR	rs1730008-?	NR	3E-11				Illumina [at least 7383741] (imputed)	N
1790	chr3	158039604	158039605	rs827120	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	3q25.32		rs827120-?	NR	2E-26		0.0288	unit increase	NR [NR]	N
1790	chr3	158066760	158066761	rs4679826	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q25.32	NR	rs4679826-A	NR	5E-9		5.859	z score increase	Affymetrix [10847151] (imputed)	N
1791	chr3	158078062	158078063	rs827106	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3q25.32	NR	rs827106-C	0.417161587308518	3E-14		0.008578808	[0.0064-0.0108] unit increase	NR [NR]	N
1791	chr3	158083917	158083918	rs28813180	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	3q25.32	NR	rs28813180-A	0.498	2E-10		0.015495869	[0.011-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1791	chr3	158083917	158083918	rs28813180	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	3q25.32	NR	rs28813180-A	0.498	3E-10		0.013713	[0.0094-0.018] unit decrease	NR [9732723] (imputed)	N
1791	chr3	158104705	158104706	rs7648196	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q25.32		rs7648196-A	0.4949	5E-9		0.13267085	[0.085-0.18] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1791	chr3	158104705	158104706	rs7648196	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q25.32		rs7648196-A	0.4948	3E-9		0.08751517	[0.058-0.117] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
1791	chr3	158107179	158107180	rs7430565	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	3q25.32	NR	rs7430565-G	NR	2E-11		1.0309278		NR [NR] (imputed)	N
1791	chr3	158107179	158107180	rs7430565	29700475	Wray NR	2018-04-26	Nat Genet	Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.	Depression	135,458 European ancestry cases, 344,901 European ancestry controls	NA	3q25.32	RSRC1, LOC100996447, MLF1	rs7430565-G	0.42	3E-9		1.0309278	[1.02-1.04]	NR [9622763] (imputed)	N
1791	chr3	158109378	158109379	rs2362965	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q25.32	RSRC1, SHOX2	rs2362965-T	0.5	2E-9		1.12	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1791	chr3	158111935	158111936	rs28820925	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q25.32	NR	rs28820925-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1791	chr3	158171453	158171454	rs12636560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q25.32		rs12636560-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1791	chr3	158178323	158178324	rs6441201	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	3q25.32	RSRC1, MLF1	rs6441201-A	0.47	1E-11		1.23	[1.16-1.31]	Illumina [7968453] (imputed)	N
1791	chr3	158187810	158187811	rs6787172	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3q25.32	NR	rs6787172-G	0.546	5E-9		0.010621488	[0.0071-0.0142] unit decrease	Affymetrix [NR] (imputed)	N
1791	chr3	158187810	158187811	rs6787172	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	3q25.32	NR	rs6787172-G	0.554	4E-8		0.008030894	[0.0052-0.0109] unit decrease	NR [~ 10000000] (imputed)	N
1791	chr3	158187810	158187811	rs6787172	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q25.32	NR	rs6787172-T	0.4458	4E-6		0.012	[0.0069-0.0171] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1791	chr3	158188402	158188403	rs6799272	30940143	Zhu Z	2019-04-02	Respir Res	Genetic overlap of chronic obstructive pulmonary disease and cardiovascular disease-related traits: a large-scale genome-wide cross-trait analysis.	Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)	12,550 European and unknown ancestry chronic obstructive pulmonary disease cases, 46,368 European and unknown ancestry controls, 144,793 European ancestry high blood pressure cases, 313,761 European ancestry controls	NA	3q25.32	GFM1, LOC100996447, LXN, MLF1, RARRES1, RSRC1	rs6799272-?	NR	1E-9				Affymetrix [up to 7325140] (imputed)	N
1792	chr3	158206113	158206114	rs11710813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q25.32		rs11710813-T	NR	9E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1792	chr3	158206113	158206114	rs11710813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3q25.32		rs11710813-T	NR	9E-14		0.0173	[0.013-0.022] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1792	chr3	158206113	158206114	rs11710813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3q25.32		rs11710813-T	NR	3E-13		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1792	chr3	158226885	158226886	rs12634907	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q25.32	RSRC1	rs12634907-A	0.6558	3E-26		0.0262	[0.021-0.031] unit increase	Affymetrix [19819130] (imputed)	N
1792	chr3	158226885	158226886	rs12634907	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q25.32	RSRC1	rs12634907-A	0.6558	9E-20		0.0223	[0.017-0.027] unit increase	Affymetrix [19819130] (imputed)	N
1792	chr3	158226885	158226886	rs12634907	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q25.32		rs12634907-?	NR	7E-27				NR [~ 8900000] (imputed)	N
1792	chr3	158241766	158241767	rs1595029	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FVC)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	3q25.32	RP11-538P18.2, AK097794	rs1595029-C	0.4798	1E-8		0.038	[0.024-0.052] unit decrease	Affymetrix [27624732] (imputed)	N
1792	chr3	158241766	158241767	rs1595029	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1)	48,943 European ancestry individuals.	57,176 European ancestry individuals, 38,199 individuals.	3q25.32	RP11-538P18.2, AK097794	rs1595029-C	0.48	4E-7		0.034	[0.02-0.048] unit decrease	Affymetrix [up to 27624732] (imputed)	N
1792	chr3	158251431	158251432	rs1714507	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3q25.32	NR	rs1714507-A	0.559782543457687	3E-12		0.00965303	[0.0069-0.0124] unit decrease	NR [NR]	N
1792	chr3	158251431	158251432	rs1714507	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q25.32	NR	rs1714507-A	0.5498	9E-6		0.013176445	[0.0074-0.019] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1792	chr3	158263883	158263884	rs1714510	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	3q25.32	NR	rs1714510-T	NR	2E-8		5.62	z score decrease	Affymetrix [10847151] (imputed)	N
1792	chr3	158263883	158263884	rs1714510	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Neurociticism	380,506 European ancestry individuals	NA	3q25.32	SHOX2	rs1714510-T	0.0771327	4E-8		5.48	z score decrease	NR [10847151] (imputed)	N
1792	chr3	158271088	158271089	rs7649643	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	3q25.32	NR	rs7649643-A	0.6649	6E-12		0.0155	[0.011-0.02] unit increase	Illumina [NR] (imputed)	N
1792	chr3	158271088	158271089	rs7649643	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	3q25.32	NR	rs7649643-A	0.6649	2E-10		0.016	[0.011-0.021] unit increase	Illumina [NR] (imputed)	N
1792	chr3	158273095	158273096	rs1714524	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q25.32	NR	rs1714524-T	0.551	6E-10		0.00818671	[0.0056-0.0108] unit decrease	NR [~ 9732723] (imputed)	N
1792	chr3	158280084	158280085	rs1656369	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depression	688,809 European ancestry individuals	NA	3q25.32	NR	rs1656369-A	NR	5E-9		5.844	z score decrease	Affymetrix [10847151] (imputed)	N
1792	chr3	158280084	158280085	rs1656369	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	3q25.32	RSRC1, MLF1	rs1656369-T	0.670312	1E-8		0.0346	[0.023-0.046] unit increase	Illumina [1220000] (imputed)	N
1792	chr3	158281020	158281021	rs1656368	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q25.32	NR	rs1656368-?	NR	7E-6				Illumina [at least 7383741] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.32	MLF1	rs6441207-C	0.586238	2E-16	(-20 ms)	0.0470529	[0.036-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.32	MLF1	rs6441207-C	0.586238	2E-13	(-24 ms)	0.0419621	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q25.32	MLF1	rs6441207-C	0.586238	1E-16	(-22 ms)	0.046428	[0.035-0.058] unit decrease	Affymetrix [10000000] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q25.32		rs6441207-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	3q25.32	RP11-538P18.2	rs6441207-C	NR	1E-13	(adults)	0.036	[0.026-0.046] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1792	chr3	158282458	158282459	rs6441207	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	3q25.32	AK097794	rs6441207-C	NR	1E-10	(adults)	0.031	[0.021-0.041] unit increase	Affymetrix, Illumina [8694268] (imputed)	N
1792	chr3	158284860	158284861	rs1714521	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.32	NR	rs1714521-C	0.411	1E-15		0.00876176	[0.0066-0.0109] unit decrease	NR [9732723] (imputed)	N
1792	chr3	158284860	158284861	rs1714521	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q25.32	NR	rs1714521-C	0.411	3E-10		0.01629531	[0.011-0.021] unit decrease	NR [~ 10000000] (imputed)	N
1792	chr3	158316725	158316726	rs78151625	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q25.32	MLF1	rs78151625-T	0.8337	2E-10		0.2108	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1792	chr3	158333890	158333891	rs6799180	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q25.32	MLF1	rs6799180-A	0.4714	2E-8		0.3705	[0.24-0.5] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1793	chr3	158351812	158351813	rs116248771	27559109	Bustamante M	2016-08-23	Hum Mol Genet	A genome-wide association meta-analysis of diarrhoeal disease in young children identifies FUT2 locus and provides plausible biological pathways.	diarrhoeal disease at age 2	2,855 European ancestry cases, 2,753 European ancestry controls	1,972 European ancestry cases, 1,544 European ancestry controls	3q25.32	GFM1	rs116248771-A	0.73	3E-6		1.19	[1.11-1.28]	Illumina [at least 5400000] (imputed)	N
1793	chr3	158366899	158366900	rs2303909	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q25.32		rs2303909-A	0.5277	3E-8		0.07428914	[0.047-0.102] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1793	chr3	158416951	158416952	rs73030851	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q25.32	RARRES1	rs73030851-A	0.83890625	5E-481	(RARRES1, 8398_277_3)	1.3465686	[1.3-1.39] unit decrease	Illumina [> 1000000] (imputed)	N
1793	chr3	158431701	158431702	rs2279561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q25.32	NR	rs2279561-T	0.243	3E-79	(Retinoic acid receptor responder protein 1, RARRES1.8398.277.3)	0.52	[0.46-0.58] unit decrease	Affymetrix [10572788] (imputed)	N
1793	chr3	158437002	158437003	rs73156502	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.32		rs73156502-T	0.021954999999999947	4E-11		1.1038909	[1.08-1.14]	Affymetrix, Illumina [9851866] (imputed)	N
1793	chr3	158444859	158444860	rs9849301	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.32	RARRES1	rs9849301-T	0.1412	2E-9		0.2284	[0.15-0.3] mmHg increase	Affymetrix [NR] (imputed)	N
1793	chr3	158447783	158447784	rs190141647	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3q25.32	intergenic	rs190141647-G	0.003	2E-6		11.39	[3.26-39.81]	Illumina [1556551]	N
1793	chr3	158448275	158448276	rs112493023	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q25.32	NR	rs112493023-G	0.177	7E-514	(Retinoic acid receptor responder protein 1, RARRES1.8398.277.3)	1.22	[1.16-1.28] unit increase	Affymetrix [10572788] (imputed)	N
1793	chr3	158450001	158450002	rs190970900	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q25.32	NR	rs190970900-C	0.008	3E-18	(Retinoic acid receptor responder protein 1, RARRES1.8398.277.3)	1.22	[0.95-1.49] unit decrease	Affymetrix [10572788] (imputed)	N
1793	chr3	158452881	158452882	rs56235582	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RARRES1	5,368 Icelandic ancestry individuals	NA	3q25.32		rs56235582-G	0.1739	1E-144		0.615482	[0.57-0.66] unit decrease	Illumina [7506463] (imputed)	N
1793	chr3	158453278	158453279	rs7646881	23297363	Cordell HJ	2013-01-07	Hum Mol Genet	Genome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.	Tetralogy of Fallot	835 European ancestry cases, 5,159 European ancestry controls	798 European ancestry cases, 2,931 European ancestry controls	3q25.32	intergenic	rs7646881-A	0.168	2E-6		1.391	[1.224-1.581]	Illumina [516131]	N
1793	chr3	158455702	158455703	rs61696028	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q25.32	RARRES1	rs61696028-C	0.146	2E-550	(Retinoic acid receptor responder protein 1, RARRES1.8398.277.3)	1.34	[1.28-1.4] unit increase	Affymetrix [10572788] (imputed)	N
1794	chr3	158476157	158476158	rs117801951	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	3q25.32	LOC100287290	rs117801951-?	NR	1E-6	(PS matching analysis)	3.96	NR	Affymetrix [345072]	N
1794	chr3	158478774	158478775	rs115946033	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RARRES1	5,368 Icelandic ancestry individuals	NA	3q25.32		rs115946033-G	0.04447	6E-21		0.441538	[0.35-0.53] unit increase	Illumina [7506463] (imputed)	N
1794	chr3	158514359	158514360	rs6802315	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (CDC/AAP)	up to 3,915 European ancestry individuals	NA	3q25.32	MFSD1	rs6802315-?	0.45	3E-7	(Age 20-60 years)	1.37	[1.2-1.54]	Affymetrix, Illumina [up to 17585496] (imputed)	N
1794	chr3	158522462	158522463	rs2364921	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q25.32	NR	rs2364921-C	0.5309	2E-8		1.0341262	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1794	chr3	158581728	158581729	rs61796821	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Pulse pressure	137 Chinese ancestry twins	NA	3q25.32		rs61796821-?	NR	4E-6				Illumina [7401356] (imputed)	N
1794	chr3	158583003	158583004	rs340286	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	3q25.32	RARRES1	rs340286-G	0.0487458540087085	4E-6		0.005748	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
1794	chr3	158596414	158596415	rs12494894	28352666	Liu TC	2017-03-23	JCI Insight	LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients.	Paneth cell defects in Crohn's disease	98 Japanese ancestry cases	NA	3q25.32	MFSD1	rs12494894-A	NR	2E-6		6.381	unit decrease	Affymetrix [4198245] (imputed)	N
1795	chr3	158610893	158610894	rs13064773	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	3q25.32	NR	rs13064773-A	NR	8E-7	(phenotype 1)	2.26	[NR]	Illumina [> 8000000] (imputed)	N
1795	chr3	158610893	158610894	rs13064773	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	3q25.32	NR	rs13064773-A	NR	8E-7	(phenotype 3)	2.26	[NR]	Illumina [> 8000000] (imputed)	N
1796	chr3	158729442	158729443	rs181766936	26545240	Giri A	2015-11-06	PLoS One	Genetic Determinants of Pelvic Organ Prolapse among African American and Hispanic Women in the Women's Health Initiative.	Pelvic organ prolapse	793 African American cases, 948 African American controls, 606 Hispanic cases, 305 Hispanic controls	NA	3q25.32	IQCJ-SCHIP1	rs181766936-C	0.8	6E-6		1.4705882		Affymetrix [at least 730985] (imputed)	N
1796	chr3	158734794	158734795	rs138465513	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.32	Intergenic	rs138465513-G	1.0	3E-6	(AA)	0.914	unit increase	Illumina [NR] (imputed)	N
1796	chr3	158807536	158807537	rs6441249	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	3q25.32	IQCJ, SCHIP1	rs6441249-?	NR	8E-6		1.086821	[1.047895-1.127193]	Illumina [at least 4756722] (imputed)	N
1796	chr3	158807964	158807965	rs9870274	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	3q25.32	IQCJ, SCHIP1	rs9870274-?	NR	7E-6		1.08651	[1.047867-1.126578]	Illumina [at least 4756722] (imputed)	N
1796	chr3	158832052	158832053	rs1472581	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q25.32	NR	rs1472581-T	0.318	6E-6	(IFNalpha_ABC_of_CD56brightCD16n)			Illumina [5084123] (imputed)	N
1796	chr3	158844940	158844941	rs138869894	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.32	IQCJ	rs138869894-A	1.0	1E-6	(AA)	0.576	unit increase	Illumina [NR] (imputed)	N
1796	chr3	158854254	158854255	rs55938743	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3q25.32	WLS	rs55938743-?		7E-11				NR [7428630] (imputed)	N
1796	chr3	158854254	158854255	rs55938743	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q25.32	TAGLN2, IGSF9	rs55938743-?		2E-10				NR [7428630] (imputed)	N
1797	chr3	158864417	158864418	rs1392949	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q25.32	NR	rs1392949-?		6E-10				NR [7428630] (imputed)	N
1797	chr3	158882832	158882833	rs9879667	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q25.32	NR	rs9879667-G	0.6	2E-9		0.00897123	[0.006-0.0119] unit decrease	NR [9732723] (imputed)	N
1797	chr3	158904858	158904859	rs10513537	31213470	Moon JY	2019-06-18	Diabetes Care	A Genome-Wide Association Study Identifies Blood Disorder-Related Variants Influencing Hemoglobin A1c With Implications for Glycemic Status in U.S. Hispanics/Latinos.	Glycated hemoglobin levels	9,636 Hispanic/Latino individuals	4,777 Hispanic/Latino individuals	3q25.32	IQCJ-SCHIP1	rs10513537-G	0.209	3E-6		0.031	[0.019-0.043] % increase	Illumina [11510031] (imputed)	N
1797	chr3	158912829	158912830	rs144152585	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.32	IQCJ	rs144152585-A	1.0	3E-6	(AA)	0.616	unit increase	Illumina [NR] (imputed)	N
1797	chr3	158917321	158917322	rs150468541	33958783	Liu G	2021-05-06	Nat Genet	Genome-wide survival study identifies a novel synaptic locus and polygenic score for cognitive progression in Parkinson's disease.	Parkinson's disease progression (cognitive)	2,650 European and unknown ancestry individuals	1,171 individuals	3q25.32	IQCJ	rs150468541-G	0.014	3E-8		5.76	[3.28-10.13] (HR)	Illumina [11220132] (imputed)	N
1797	chr3	158935341	158935342	rs2621277	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q25.32		rs2621277-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1797	chr3	158956402	158956403	rs1449023	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Sensorimotor dexterity	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q25.32	IQCJ	rs1449023-T	NR	9E-7		0.16807069	[0.084-0.252] unit decrease	Illumina [> 6200000] (imputed)	N
1797	chr3	158978295	158978296	rs2595239	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q25.32		rs2595239-G	0.564	3E-9		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
1797	chr3	158980013	158980014	rs2621308	24847101	Rudkowska I	2014-05-19	J Lipid Res	Genome-wide association study of the plasma triglyceride response to an n-3 polyunsaturated fatty acid supplementation.	Response to long-chain n-3 polyunsaturated fatty acid supplementation (change in triglyceride levels)	81 responder individuals, 60 non-responder individuals	NA	3q25.32	IQCJ-SCHIP1	rs2621308-A	0.15	3E-6		3.65		Illumina [2668805]	N
1798	chr3	159012289	159012290	rs141332792	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.32	IQCJ-SCHIP1	rs141332792-G	1.0	2E-6	(AA)	0.631	unit increase	Illumina [NR] (imputed)	N
1798	chr3	159015789	159015790	rs35611996	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Conotruncal heart defects (maternal effects)	up to 838 European ancestry trios	NA	3q25.32	IQCJ, SCHIP1	rs35611996-?	NR	3E-6		1.00868	[1.005013-1.01236]	Illumina [at least 4756722] (imputed)	N
1798	chr3	159015789	159015790	rs35611996	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Congenital heart disease (maternal effect)	1,119 European ancestry trios	NA	3q25.32	IQCJ, SCHIP1	rs35611996-?	NR	3E-6		1.008695	[1.005028-1.012374]	Illumina [at least 4756722] (imputed)	N
1798	chr3	159035619	159035620	rs2595255	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q25.33	NR	rs2595255-T	0.411	1E-11		0.00752363	[0.0054-0.0097] unit decrease	NR [9732723] (imputed)	N
1798	chr3	159048332	159048333	rs1449012	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q25.33	NR	rs1449012-T	0.463	2E-9	(Conditioned on chr3:158284861)	0.015373412	[0.01-0.02] unit decrease	NR [~ 10000000] (imputed)	N
1798	chr3	159083510	159083511	rs7620377	34224794	Wang K	2021-07-02	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study identified INSC gene associated with Trail Making Test Part A and Alzheimer's disease related cognitive phenotypes.	Executive function (trail making test B)	684 European ancestry individuals, 17 Hispanic individuals, 36 African American individuals, 18 individuals	NA	3q25.33		rs7620377-A	NR	1E-5		26.83	[15.02-38.64] unit decrease	NR [534934]	N
1798	chr3	159093545	159093546	rs1198929434	32592749	Butler-Laporte G	2020-06-24	Clin Microbiol Infect	Elevated body-mass index is associated with an increased risk of infectious disease admissions and mortality: a mendelian randomization study.	Pneumonia (28-day mortality)	513 European ancestry cases, 6,685 European ancestry controls	NA	3q25.33	IQCJ-SCHIP1	rs1198929434-TAAAC	0.99	1E-10		0.14	[0.099-0.181] unit decrease	NR [NR]	N
1799	chr3	159145824	159145825	rs4679858	30373671	Hayden LP	2018-10-29	Respir Res	Childhood asthma is associated with COPD and known asthma variants in COPDGene: a genome-wide association study.	Self-reported childhood asthma in adult smokers	385 European ancestry cases, 4979 European ancestry controls, 325 African American cases, 2342 African American controls	NA	3q25.33	SCHIP1, IQCJ-SCHIP1	rs4679858-G	NR	2E-7		1.48	NR	Illumina [up to 15374350] (imputed)	N
1799	chr3	159180061	159180062	rs6441263	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs6441263-G	0.280447	5E-33		1.0588956	[1.05-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1799	chr3	159182168	159182169	rs145743887	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs145743887-T	0.013469999999999982	1E-30		1.2351635	[1.19-1.28]	Affymetrix, Illumina [9851866] (imputed)	N
1799	chr3	159192742	159192743	rs9824310	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q25.33	IQCJ-SCHIP1, SCHIP1	rs9824310-A	NR	5E-7		0.085	[0.052-0.118] unit decrease	Illumina [27700000] (imputed)	N
1799	chr3	159236519	159236520	rs150921465	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs150921465-T	0.01731400000000005	2E-28		1.226299	[1.18-1.27]	Affymetrix, Illumina [9851866] (imputed)	N
1799	chr3	159238440	159238444	rs139426027	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		3q25.33	BBS5	rs139426027-C	0.017	6E-6		1.663	[0.96-2.37] unit decrease	Illumina [640625] (imputed)	N
1800	chr3	159259290	159259291	rs2222328	19197348	Lowe JK	2009-02-06	PLoS Genet	Genome-wide association studies in an isolated founder population from the Pacific Island of Kosrae.	Quantitative traits	2,906 Kosraen individuals	NA	3q25.33	SCHIP1	rs2222328-C	0.32	8E-7	(WC)	0.22	[NR] inch decrease	Affymetrix [408775]	N
1800	chr3	159262961	159262962	rs116295688	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs116295688-T	0.03126200000000001	4E-42		1.2391074	[1.2-1.28]	Affymetrix, Illumina [9851866] (imputed)	N
1800	chr3	159268307	159268308	rs7646339	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	3q25.33	NR	rs7646339-T	0.3525	2E-6		0.1497	[0.088-0.211] unit decrease	Illumina [10677593] (imputed)	N
1800	chr3	159268462	159268463	rs7616179	25839716	Ng E	2015-04-02	Environ Res	Genome-wide association study of plasma levels of polychlorinated biphenyls disclose an association with the CYP2B6 gene in a population-based sample.	Polychlorinated biphenyl levels	922 European ancestry individuals	NA	3q25.33	NR	rs7616179-?		9E-7	(PCB156)	1.04	[0.63-1.45] unit increase	Illumina [8736858] (imputed)	N
1800	chr3	159269141	159269142	rs11710258	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs11710258-G	0.660135	4E-16		1.0368776	[1.03-1.04]	Affymetrix, Illumina [9851866] (imputed)	N
1800	chr3	159275776	159275777	rs5021680	30172743	Liang X	2018-08-30	Bone	Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis.	Bone mineral density (hip)	2,286 European ancestry individuals	NA	3q25.33	SCHIP1	rs5021680-?	NR	4E-10				Affymetrix [753382]	N
1800	chr3	159358777	159358778	rs750688	29921221	Cha S	2018-06-19	BMC Genomics	Identification of five novel genetic loci related to facial morphology by genome-wide association studies.	Upper eyelid morphology	5,643 Korean ancestry individuals	1,926 Korean ancestry individuals	3q25.33	SCHIP1	rs750688-A	0.18	6E-6	(Tangent line angle of er4)	0.013	[NR] unit decrease	Affymetrix [311944]	N
1800	chr3	159372344	159372345	rs9883498	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q25.33	NR	rs9883498-?	NR	9E-23				Affymetrix [NR]	N
1801	chr3	159441179	159441180	rs17807116	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q25.33	NR	rs17807116-?	NR	2E-8	(Japanese)	1.0307	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1801	chr3	159475510	159475511	rs9831658	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs9831658-T	0.506424	2E-38		1.057113	[1.05-1.07]	Affymetrix, Illumina [9851866] (imputed)	N
1801	chr3	159478753	159478754	rs7617394	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs7617394-T	0.633641	4E-42		1.0663178	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1801	chr3	159506638	159506639	rs1461102	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q25.33	IQCJ-SCHIP1	rs1461102-T	0.803833	2E-10		0.0179748	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr3	159565408	159565409	rs11928736	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs11928736-C	0.563426	3E-60		1.0721891	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1802	chr3	159584755	159584757	rs36039672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q25.33	SCHIP1, IQCJ-SCHIP1	rs36039672-A	0.051194	3E-11		0.03700796	[0.026-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1802	chr3	159623558	159623559	rs1353248	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs1353248-T	0.704687	1E-49		1.0712965	[1.06-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1802	chr3	159623558	159623559	rs1353248	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	3q25.33	intergenic	rs1353248-?		5E-16		1.1798072		Illumina [252970]	N
1802	chr3	159623558	159623559	rs1353248	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3q25.33	SCHIP1, IL12A	rs1353248-?	0.712	1E-8	(conditioned on imm_3_161120372)	1.1363636		Illumina [139553]	N
1802	chr3	159625392	159625393	rs80014155	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		IL12A	rs80014155-A	0.004	3E-11	(conditioned on rs668998, rs6227041 & rs2366643)	3.44	[2.39-4.94]	Illumina [237619] (imputed)	N
1802	chr3	159629366	159629367	rs9873580	25920553	Coleman C	2015-04-29	Eur J Hum Genet	Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci.	Celiac disease	425 Irish ancestry cases, 453 Irish ancestry controls	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	3q25.33	CCR3, CCR2	rs9873580-?	NR	3E-8		0.1631	unit decrease	Illumina [up to 143074]	N
1802	chr3	159633460	159633461	rs77249081	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	3q25.33	SCHIP1	rs77249081-G	0.0096	8E-11		3.7	2.49-5.49	Affymetrix [6845584] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	3q25.33	IL12A-AS1	rs76830965-A	NR	3E-12		1.6589		Illumina [up to 1244428] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.33	NR	rs76830965-A	0.112396	2E-10				Affymetrix, Illumina [23472807] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q25.33	NR	rs76830965-A	0.116683	2E-12		0.020783	[0.015-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q25.33	NR	rs76830965-A	0.117642	3E-14		0.023407	[0.017-0.029] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs76830965-A	0.12750799999999995	4E-483		1.3884004	[1.37-1.41]	Affymetrix, Illumina [9851866] (imputed)	N
1802	chr3	159637677	159637678	rs76830965	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q25.33		rs76830965-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1802	chr3	159639658	159639659	rs62270414	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		IL12A	rs62270414-G	0.15	6E-17	(conditioned on rs2366643)	1.41	[1.30-1.53]	Illumina [237619] (imputed)	N
1802	chr3	159644296	159644297	rs6799788	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	3q25.33	IL12A, SCHIP1	rs6799788-G	0.2476976	1E-6	(partial response - SSRI treated - 2 weeks)	1.6268	[1.43-1.82]	Affymetrix, Illumina [1200000] (imputed)	N
1802	chr3	159645670	159645671	rs6805758	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs6805758-C	0.676293	6E-39		1.0602297	[1.05-1.07]	Affymetrix, Illumina [9851866] (imputed)	N
1803	chr3	159647673	159647674	rs17753641	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	3q25.33	IL12A-AS1	rs17753641-G		7E-29		1.3797095		Illumina [252970]	N
1803	chr3	159647673	159647674	rs17753641	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	3q25.33	IL12A	rs17753641-G	NA	2E-29				Illumina [252970]	N
1803	chr3	159654524	159654525	rs1428284	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q25.33	NR	rs1428284-G	0.4505	2E-8				NR [9056863] (imputed)	N
1803	chr3	159663293	159663294	rs644587	28062665	Kawashima M	2017-01-05	Hum Mol Genet	Genome-wide association studies identify PRKCB as a novel genetic susceptibility locus for primary biliary cholangitis in the Japanese population.	Primary biliary cholangitis	1,381 Japanese ancestry cases, 1,505 Japanese ancestry controls	512 Japanese ancestry cases, 6,512 Japanese ancestry controls	3q25.33	IL12A	rs644587-T	0.115768463073852	1E-6		1.5461389	[1.293-1.848]	Affymetrix [425290]	N
1803	chr3	159665049	159665050	rs17810546	25799145	Kappen JH	2015-03-23	PLoS One	Genome-wide association study in an admixed case series reveals IL12A as a new candidate in Behcet disease.	Behcet's disease	1 Afghanistan ancestry case, 154 Middle Eastern/North African ancestry cases, 2 Cape Verdian cases, 1 Curacao case, 1 Dominican Republic ancestry cases, 54 European ancestry cases, 1 Israeli case, 1 Surinamese ancestry case, 1 Thai ancestry case, 1 Chinese ancestry case, 119 Turkish ancestry cases, 87 Middle Eastern/North African ancestry controls, 5,756 controls	2,030 Turkish cases, 1,904 Turkish controls	3q25.33	IL12A	rs17810546-G		1E-10		1.66	[1.42-1.93]	Illumina [505454]	N
1803	chr3	159665049	159665050	rs17810546	23291587	Kirino Y	2013-01-06	Nat Genet	Genome-wide association analysis identifies new susceptibility loci for Behcet's disease and epistasis between HLA-B*51 and ERAP1.	Behcet's disease	435 Turkish uveitis cases, 780 Turkish without uveitis cases, 1,278 Turkish controls	355 Turkish uveitis cases, 483 Turkish without uveitis cases, 601 Turkish controls, up to 612 Japanese ancestry cases, up to 740 Japanese ancestry controls	3q25.33	IL12A	rs17810546-A	0.05	6E-7	(All Turkish cases)	1.55	[1.30-1.85]	Illumina [779465] (imputed)	N
1803	chr3	159665049	159665050	rs17810546	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q25.33	IL12A	rs17810546-G	0.13	4E-28		1.36	[1.29-1.44]	Illumina [292387]	N
1803	chr3	159665049	159665050	rs17810546	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3q25.33	IL12A, SCHIP1	rs17810546-G	NR	1E-9		1.35	[1.23-1.49]	Illumina [310605]	N
1803	chr3	159674927	159674928	rs2561288	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3q25.33	SCHIP1, IL12A	rs2561288-?	0.455	8E-8	(conditioned on rs1353248, imm_3_161120372)	1.12		Illumina [139553]	N
1803	chr3	159677298	159677299	rs2561286	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3q25.33		rs2561286-G	NR	1E-6		0.332817	[0.2-0.47] unit decrease	NR [5275424] (imputed)	N
1803	chr3	159686668	159686669	rs7645203	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs7645203-T	0.598856	1E-79		1.0844725	[1.08-1.09]	Affymetrix, Illumina [9851866] (imputed)	N
1803	chr3	159688584	159688585	rs680242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q25.33		rs680242-T	NR	3E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
1803	chr3	159691111	159691112	rs1014486	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q25.33	IL12A-AS1	rs1014486-C	NR	3E-28		1.11	NR	Affymetrix, Illumina [8278136] (imputed)	N
1803	chr3	159691111	159691112	rs1014486	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q25.33	IL12A	rs1014486-G	0.44	1E-18		1.11		Illumina [161311]	N
1803	chr3	159691524	159691525	rs73170558	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs73170558-T	0.905095	1E-31		1.0865749	[1.07-1.1]	Affymetrix, Illumina [9851866] (imputed)	N
1803	chr3	159693569	159693570	rs2647929	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q25.33	IL12A-AS1	rs2647929-C	0.567458	2E-11		0.015005482	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
1803	chr3	159694052	159694053	rs77583790	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	NA	3q25.33	IL12A	rs77583790-A		6E-11		2.15	[NR]	Illumina [> 644674] (imputed)	N
1803	chr3	159694052	159694053	rs77583790	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3q25.33	SCHIP1, IL12A	rs77583790-A	0.004013	2E-8	(ACA positive)	2.7624		Illumina [126270]	N
1803	chr3	159694052	159694053	rs77583790	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3q25.33	SCHIP1, IL12A	rs77583790-A	0.004013	1E-11		2.5673		Illumina [126270]	N
1803	chr3	159694052	159694053	rs77583790	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Systemic sclerosis	671 European ancestry ACA-positive cases, 347 European ancestry ATA-positive cases, 815 European ancestry cases, 3,466 European ancestry controls	1,387 European ancestry ACA-positive cases, 896 European ancestry ATA-positive cases, 1,734 European ancestry cases, 5,935 European ancestry controls	3q25.33	IL12A, SCHIP1	rs77583790-A	0.004013	9E-6	(ATA positive)	2.6382		Illumina [126270]	N
1803	chr3	159694052	159694053	rs77583790	24387989	Mayes MD	2014-01-02	Am J Hum Genet	Immunochip analysis identifies multiple susceptibility loci for systemic sclerosis.	Limited cutaneous systemic scleroderma	1,127 European ancestry cases, 3,466 European ancestry controls	2,507 European ancestry cases, 5,935 European ancestry controls	3q25.33	SCHIP1, IL12A	rs77583790-A	0.004013	2E-11		2.814		Illumina [126270]	N
1803	chr3	159698944	159698945	rs4680534	19525953	De Jager PL	2009-06-14	Nat Genet	Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.	Multiple sclerosis	2,624 European ancestry cases, 7,220 European ancestry controls	2,215 European ancestry cases, 2,116 European ancestry controls	3q25.33	IL12A	rs4680534-C	0.37	6E-6		1.12	[1.02-1.22]	Affymetrix, Illumina [~ 2560000] (imputed)	N
1803	chr3	159709650	159709651	rs2243123	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q25.33	IL12A	rs2243123-G	NR	7E-6		1.08	[1.06-1.1]	Illumina [465434]	N
1803	chr3	159710097	159710098	rs582537	28425483	Qiu F	2017-04-20	Nat Commun	A genome-wide association study identifies six novel risk loci for primary biliary cholangitis.	Primary biliary cholangitis	1,122 Han Chinese ancestry cases, 4,036 Han Chinese ancestry controls	907 Han Chinese ancestry cases, 2,127 Han Chinese ancestry controls	3q25.33	IL12A	rs582537-?	0.7	2E-11		1.3333333	[1.22-1.45]	Illumina [776516]	N
1803	chr3	159712372	159712373	rs10936182	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q25.33	IL12A-AS1	rs10936182-T	NR	5E-8		1.0971	NR	Affymetrix, Illumina [8278136] (imputed)	N
1803	chr3	159715550	159715551	rs668998	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls			rs668998-A	0.571772	7E-47		1.0630885	[1.05-1.08]	Affymetrix, Illumina [9851866] (imputed)	N
1803	chr3	159715550	159715551	rs668998	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA		IL12A	rs668998-G	0.43	5E-9	(conditioned on rs62270414 & rs2366643)	1.26	[1.17-1.36]	Illumina [237619] (imputed)	N
1803	chr3	159719131	159719132	rs485497	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	3q25.33	IL12A	rs485497-A	0.48	1E-10		1.3	[1.16-1.46]	Illumina [648937]	N
1803	chr3	159728877	159728878	rs6441286	20639880	Liu X	2010-07-18	Nat Genet	Genome-wide meta-analyses identify three loci associated with primary biliary cirrhosis.	Primary biliary cholangitis	453 European ancestry cases, 945 European ancestry controls,	481 European ancestry cases, 3,706 European ancestry controls	3q25.33	IL12A	rs6441286-G	0.394	8E-12		1.44	[NR]	Illumina [276459]	N
1803	chr3	159728877	159728878	rs6441286	19458352	Hirschfield GM	2009-05-20	N Engl J Med	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cholangitis	505 European ancestry cases, 1,507 European ancestry controls	526 European ancestry cases, 1,206 European ancestry controls	3q25.33	IL12A	rs6441286-G	0.39	2E-14		1.54	[1.38-1.72]	Illumina [305724]	N
1803	chr3	159728986	159728987	rs564799	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3q25.33	IL12A	rs564799-?	0.408	1E-6	(EA)	1.16	[NR]	NR [6344733] (imputed)	N
1803	chr3	159728986	159728987	rs564799	26502338	Bentham J	2015-10-26	Nat Genet	Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.	Systemic lupus erythematosus	5,201 European ancestry cases, 9,066 European ancestry controls	2,018 European ancestry cases, 6,925 European ancestry controls	3q25.33	IL12A	rs564799-C		2E-9		1.14	[1.09-1.18]	Illumina [644674]	N
1803	chr3	159729058	159729059	rs564976	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3q25.33	IL12A	rs564976-?	NR	1E-10		1.1235955	[1.08-1.16]	Illumina [at least 5000000] (imputed)	N
1803	chr3	159729654	159729655	rs1874886	27548383	Ortiz-Fernandez L	2016-08-22	PLoS One	Genetic Analysis with the Immunochip Platform in Behcet Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci.	Behcet's disease	278 Spanish ancestry cases, 1,517 Spanish ancestry controls	up to 130 Spanish ancestry cases, up to 605 Spanish ancestry controls	3q25.33	IL12A	rs1874886-A	0.370	2E-8		1.61	[1.36-1.89]	Illumina [133018]	N
1803	chr3	159730818	159730819	rs9877910	22936693	Juran BD	2012-08-29	Hum Mol Genet	Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants.	Primary biliary cirrhosis	2,216 European ancestry cases, 5,594 Europen ancestry controls	NA	3q25.33	NR	rs9877910-T		1E-17		1.47	[1.34-1.60]	Illumina [109812]	N
1803	chr3	159733526	159733527	rs589446	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls, 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls	NA	3q25.33		rs589446-T	NR	2E-52		0.329453	[0.29-0.37] unit decrease	NR [2787054] (imputed)	N
1803	chr3	159733526	159733527	rs589446	34033851	Cordell HJ	2021-05-22	J Hepatol	An international genome-wide meta-analysis of primary biliary cholangitis: novel risk loci and candidate drugs.	Primary biliary cholangitis	8,021 European ancestry cases, 16,489 European ancestry controls	NA	3q25.33		rs589446-T	NR	2E-55		0.353093	[0.31-0.4] unit decrease	NR [5054572] (imputed)	N
1803	chr3	159733526	159733527	rs589446	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	3q25.33	IL12A	rs589446-?	0.65	2E-10		1.1627907		Illumina [4723365]	N
1803	chr3	159734667	159734668	rs522127	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	3q25.33	IL12A, C3orf80	rs522127-C	0.43	5E-7		1.07	[1.04-1.09]	Illumina [161311]	N
1803	chr3	159736484	159736485	rs2366643	22961000	Liu JZ	2012-10-01	Nat Genet	Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis.	Primary biliary cirrhosis	2,861 British and Irish ancestry cases, 8,514 British and Irish ancestry controls	NA	3q25.33	IL12A	rs2366643-A	0.57	4E-22		1.35	[1.27-1.44]	Illumina [237619] (imputed)	N
1803	chr3	159744437	159744438	rs2914119	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs2914119-T	0.8182	6E-16		1.0443273	[1.03-1.05]	Affymetrix, Illumina [9851866] (imputed)	N
1803	chr3	159745862	159745863	rs485499	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	3q25.33	IL12A, SCHIP1	rs485499-T	0.6	1E-23		1.4084507	NR	Illumina [1143634] (imputed)	N
1803	chr3	159745862	159745863	rs485499	21399635	Mells GF	2011-03-13	Nat Genet	Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis.	Primary biliary cholangitis	1,840 European ancestry cases, 5,163 European ancestry controls and (Liu et al)	620 European ancestry cases, 2,514 European ancestry controls	3q25.33	IL12A	rs485499-T	0.57	2E-16		1.38	[1.28-1.50]	Illumina [507467]	N
1804	chr3	159800980	159800981	rs75677206	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3q25.33	IL12A	rs75677206-C	0.017000000000000015	5E-6		1.2618774		NR [9372253] (imputed)	N
1804	chr3	159823790	159823791	rs56139929	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3q25.33	NR	rs56139929-?	NR	4E-7		0.0818	[0.05-0.113] unit increase	Illumina [at least 560000] (imputed)	N
1804	chr3	159848498	159848499	rs61342867	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q25.33	IL12A-AS1	rs61342867-T	0.197698	2E-10		0.017748764	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1804	chr3	159863975	159863976	rs4680564	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs4680564-G	0.604814	2E-30		1.0512007	[1.04-1.06]	Affymetrix, Illumina [9851866] (imputed)	N
1804	chr3	159899730	159899731	rs9840016	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q25.33	NR	rs9840016-T	0.792	2E-6		0.0152	[0.0089-0.0215] unit decrease	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1805	chr3	159923302	159923303	rs16831132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.33	NR	rs16831132-T	0.374048	1E-11				Affymetrix, Illumina [23467995] (imputed)	N
1805	chr3	159923302	159923303	rs16831132	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q25.33	NR	rs16831132-T	0.39739	2E-12		0.013584	[0.0098-0.0174] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
1805	chr3	159923541	159923542	rs66538855	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q25.33		rs66538855-C	NR	2E-8		0.0122	[0.0079-0.0165] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
1805	chr3	159923575	159923576	rs16831133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q25.33	IL12A-AS1	rs16831133-C	0.398022	1E-9		0.014021971	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
1805	chr3	159936284	159936285	rs75186047	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q25.33	NR	rs75186047-T	0.281792	2E-10		0.013073	[0.0091-0.0171] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
1805	chr3	159950797	159950798	rs55667203	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs55667203-T	0.17593000000000003	2E-64		1.1042433	[1.09-1.11]	Affymetrix, Illumina [9851866] (imputed)	N
1805	chr3	159954630	159954631	rs6791269	34177453	Swart PC	2021-06-10	Front Neurosci	A Genome-Wide Association Study and Polygenic Risk Score Analysis of Posttraumatic Stress Disorder and Metabolic Syndrome in a South African Population.	Post-traumatic stress disorder	260 South African Colored cases, 343 South African Colored controls	NA	3q25.33		rs6791269-?	NR	4E-6		0.3628	unit decrease	Illumina [11927194] (imputed)	N
1805	chr3	159972416	159972417	rs77203023	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.33	NR	rs77203023-G	0.01394	2E-8	(LUM)	0.2485	NR unit increase	Illumina [1671387] (imputed)	N
1805	chr3	160004025	160004026	rs7624902	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q25.33		rs7624902-G	NR	1E-8		0.0108	[0.0071-0.0145] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1805	chr3	160025286	160025287	rs6790951	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q25.33	RP11-432B6.3	rs6790951-C	0.520317	2E-9		0.0115111	[0.0078-0.0153] unit increase	Affymetrix [NR] (imputed)	N
1805	chr3	160026629	160026630	rs78376817	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q25.33		rs78376817-C	NR	5E-28		0.0244	[0.02-0.029] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1805	chr3	160029131	160029132	rs73875254	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q25.33	IFT80	rs73875254-A	0.738268	7E-22		0.00423383	[0.0034-0.0051] unit decrease	Affymetrix [13995440] (imputed)	N
1805	chr3	160037971	160037972	rs17826137	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	3q25.33	IFT80	rs17826137-?	NR	2E-11		0.0019	[0.0013-0.0025] unit increase	Affymetrix [21347608] (imputed)	N
1805	chr3	160037971	160037972	rs17826137	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	3q25.33	IFT80	rs17826137-?	NR	3E-17		0.004	[0.003-0.005] unit increase	Affymetrix [21347608] (imputed)	N
1806	chr3	160042458	160042459	rs4616688	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3q25.33	NR	rs4616688-G	0.470985	5E-13		0.013898	[0.01-0.018] unit increase	Affymetrix [15000001]	N
1806	chr3	160055636	160055637	rs145925847	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q25.33		rs145925847-A	0.015758999999999967	1E-21		1.221479	[1.18-1.27]	Affymetrix, Illumina [9851866] (imputed)	N
1806	chr3	160086054	160086055	rs10513551	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	LDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.33	IFT80	rs10513551-T	0.5299	1E-10		0.0141	[0.0098-0.0184] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1806	chr3	160110254	160110255	rs11708118	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q25.33	IFT80	rs11708118-G	0.738293	3E-35		0.00703864	[0.0059-0.0082] unit decrease	Affymetrix [13995440] (imputed)	N
1806	chr3	160116806	160116807	rs16831207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q25.33		rs16831207-G	NR	2E-18		0.0222	[0.017-0.027] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1806	chr3	160147967	160147967	rs150937040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	3q25.33		rs150937040-TAAGGAGGTAATAAGGGAG	NR	6E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
1806	chr3	160147967	160147967	rs150937040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q25.33		rs150937040-TAAGGAGGTAATAAGGGAG	NR	3E-9		0.01	[0.0067-0.0133] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
1806	chr3	160153304	160153305	rs7629	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q25.33		rs7629-G	NR	4E-18		0.0201	[0.016-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1806	chr3	160153304	160153305	rs7629	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q25.33	NR	rs7629-G	0.5279	8E-14		0.0311	[0.023-0.039] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1806	chr3	160153988	160153989	rs6785881	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q25.33	RP11-432B6.3	rs6785881-C	0.521522	3E-9		0.0116771	[0.0078-0.0155] unit increase	Affymetrix [NR] (imputed)	N
1806	chr3	160154257	160154258	rs1047210	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals	NA	3q25.33	NR	rs1047210-C	0.4751	5E-10		0.1872	[0.13-0.25] unit increase	Affymetrix, Illumina [7567980] (imputed)	N
1806	chr3	160159920	160159921	rs11706810	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Intrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	3q25.33	TRIM59	rs11706810-C	0.45	2E-9		0.4089	[0.28-0.54] unit increase	Affymetrix, Illumina [~ 7400000] (imputed)	N
1806	chr3	160167874	160167875	rs113997576	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q25.33	NR	rs113997576-T	NR	4E-9		0.0211	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1806	chr3	160168291	160168292	rs2279457	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Alanine levels	115,078 European ancestry individuals	NA	3q25.33		rs2279457-A	0.471958	4E-21		0.0386967	[0.031-0.047] unit increase	NR [11722792] (imputed)	N
1807	chr3	160171091	160171092	rs56394279	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q25.33	NR	rs56394279-C	0.468	5E-12		0.0314	[0.022-0.04] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1807	chr3	160171091	160171092	rs56394279	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.33	TRIM59	rs56394279-T	0.4838	7E-13		0.2361	[0.17-0.3] mmHg decrease	Affymetrix [NR] (imputed)	N
1807	chr3	160171091	160171092	rs56394279	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q25.33	TRIM59	rs56394279-T	0.4853	2E-8		0.1376	[0.089-0.186] mmHg decrease	Affymetrix [NR] (imputed)	N
1807	chr3	160171091	160171092	rs56394279	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q25.33	NR	rs56394279-C	NR	8E-9		0.019	unit increase	Affymetrix [at least 7091467] (imputed)	N
1807	chr3	160171091	160171092	rs56394279	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Low density lipoprotein cholesterol levels	265,204 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q25.33	NR	rs56394279-C	NR	3E-7		0.016	unit increase	Affymetrix [at least 7091467] (imputed)	N
1807	chr3	160173599	160173600	rs17236494	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3q25.33	TRIM59, KPNA4	rs17236494-C	0.27	2E-9		6.04	z-score increase	Affymetrix [4314223] (imputed)	N
1807	chr3	160173599	160173600	rs17236494	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q25.33	TRIM59, KPNA4	rs17236494-C	0.27	8E-14		7.47	z-score increase	Affymetrix [4312306] (imputed)	N
1807	chr3	160175844	160175845	rs6789211	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q25.33	TRIM59	rs6789211-C	0.579511	2E-10		0.014211768	[0.0098-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1807	chr3	160175896	160175897	rs11716413	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q25.33		rs11716413-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1807	chr3	160176368	160176369	rs191765304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs191765304-T	1.0	3E-6	(AA)	0.634	unit increase	Illumina [NR] (imputed)	N
1807	chr3	160176368	160176369	rs191765304	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs191765304-T	1.0	5E-7	(AA)	3.4	NR unit increase	Illumina [NR] (imputed)	N
1807	chr3	160176516	160176517	rs188694422	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs188694422-A	1.0	3E-6	(AA)	0.633	unit increase	Illumina [NR] (imputed)	N
1807	chr3	160176516	160176517	rs188694422	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs188694422-A	1.0	5E-7	(AA)	3.398	NR unit increase	Illumina [NR] (imputed)	N
1807	chr3	160191373	160191374	rs3851366	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	3q25.33	KPintergenic4	rs3851366-?	0.46830000000000005	4E-10		0.98	[0.97-0.98]	Affymetrix, Illumina [8494288] (imputed)	N
1807	chr3	160192517	160192518	rs4680588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q25.33	NR	rs4680588-G	0.489374	5E-13				Affymetrix, Illumina [19872809] (imputed)	N
1807	chr3	160209025	160209026	rs1369666	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation PhenoAge acceleration	34,463 European ancestry individuals, 6,148 African American individuals	NA	3q25.33	NR	rs1369666-?	NR	2E-8				Affymetrix, Illumina [6210360] (imputed)	N
1807	chr3	160217482	160217483	rs7627756	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	3q25.33	NR	rs7627756-?	NR	2E-13				Affymetrix, Illumina [6211246] (imputed)	N
1807	chr3	160223171	160223172	rs721023	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q25.33	KPNA4	rs721023-A	0.5473	7E-14		0.0198	[0.015-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1807	chr3	160226306	160226307	rs17236529	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Smooth-surface caries	1006 European ancestry individuals	NA	3q25.33	KPNA4	rs17236529-T	0.0346	3E-6		1.5126	[NR] unit increase	Illumina [1216189] (imputed)	N
1807	chr3	160226306	160226307	rs17236529	24556642	Zeng Z	2014-02-18	Caries Res	Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.	Pit-and-Fissure caries	979 European ancestry individuals	NA	3q25.33	KPNA4	rs17236529-T	0.0344	2E-9		1.7754	[NR] unit increase	Illumina [1216074] (imputed)	N
1807	chr3	160246705	160246706	rs190230151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	KPNA4	rs190230151-G	1.0	3E-6	(AA)	0.571	unit increase	Illumina [NR] (imputed)	N
1807	chr3	160246705	160246706	rs190230151	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	KPNA4	rs190230151-G	1.0	6E-7	(AA)	3.075	NR unit increase	Illumina [NR] (imputed)	N
1807	chr3	160247821	160247822	rs58377812	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3q25.33	IFT80, SMC4, MIR15B, MIR16-2, TRIM59, KPNA4, SCARNA7	rs58377812-T	0.0505	4E-6		1.12266	[1.07-1.17]	NR [9372253] (imputed)	N
1807	chr3	160258868	160258869	rs56156703	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glutamine levels	114,751 European ancestry individuals	NA	3q25.33		rs56156703-A	0.502083	4E-24		0.0418425	[0.034-0.05] unit increase	NR [11722792] (imputed)	N
1807	chr3	160263383	160263384	rs62272800	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q25.33		rs62272800-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1807	chr3	160265816	160265817	rs75943566	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q25.33		rs75943566-?	NR	2E-7				NR [~ 8900000] (imputed)	N
1807	chr3	160266345	160266346	rs570744866	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal dimension	38,932 British ancestry individuals	NA	3q25.33		rs570744866-C	0.0010531	7E-7		0.51292	[0.31-0.72] unit decrease	Affymetrix [15580782] (imputed)	N
1807	chr3	160284735	160284736	rs74676712	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	3q25.33	KPNA4	rs74676712-T	0.1138	4E-10		1.3	1.2-1.41	Affymetrix [6845584] (imputed)	N
1808	chr3	160301771	160301772	rs4679900	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation Hannum age acceleration	34,449 European ancestry individuals, 6,148 African American individuals	NA	3q25.33	NR	rs4679900-?	NR	7E-10				Affymetrix, Illumina [6210504] (imputed)	N
1808	chr3	160312920	160312921	rs112846137	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	3q25.33	KPNA4-ARL14	rs112846137-T	NR	1E-8		1.27	[1.17-1.37]	Illumina [6450125] (imputed)	N
1808	chr3	160313353	160313354	rs1920644	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	3q25.33	BC125159, KPNA4, ARL14	rs1920644-T	0.52	5E-8		1.09	[1.05-1.12]	Illumina [~ 1092418] (imputed)	N
1808	chr3	160328567	160328568	rs4679903	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q25.33		rs4679903-A	NR	3E-12		0.0156	[0.011-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1808	chr3	160335587	160335588	rs1920650	30336701	Sanchez-Roige S	2018-10-19	Am J Psychiatry	Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts.	Alcohol use disorder (total score)	141,932 European ancestry individuals	NA	3q25.33	SMC4, TRIM59, B3GAT3P1, KPNA4, SCARNA7, KRT8P12, RPL6P8, ARL14	rs1920650-T	NR	2E-8		5.63	[NR] z score decrease	NR [16213998]	N
1808	chr3	160340895	160340896	rs4679904	19458352	Hirschfield GM	2009-05-20	N Engl J Med	Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants.	Primary biliary cholangitis	505 European ancestry cases, 1,507 European ancestry controls	526 European ancestry cases, 1,206 European ancestry controls	3q25.33	ARF7	rs4679904-G	0.72	1E-6		1.38	[1.21-1.57]	Illumina [305724]	N
1808	chr3	160359902	160359903	rs73026018	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q25.33	NR	rs73026018-A	0.01394	1E-9	(GARS)	0.03541	NR unit increase	Illumina [1671387] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		6E-9		0.335	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		2E-6	(EA)	0.304	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		1E-10		0.259	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		8E-7		0.189	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		3E-7		0.137	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160370159	160370160	rs2178452	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q25.33	SCARNA7, ARL14	rs2178452-G		6E-8		0.133	unit increase	Affymetrix [at least 2696785] (imputed)	N
1808	chr3	160396862	160396863	rs116423146	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3q25.33	ARL14, PPM1L, KPNA4, SCARNA7, TRIM59, SMC4, MIR16-2, MIR15B, IFT80, B3GALNT1, C3orf80, IL12A-AS1	rs116423146-?		3E-9	(heterogeneous)	0.278	[0.19-0.37] unit increase	Illumina [1492601] (imputed)	N
1808	chr3	160396862	160396863	rs116423146	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3q25.33	ARL14, PPM1L, KPNA4, SCARNA7, TRIM59, SMC4, MIR16-2, MIR15B, IFT80, B3GALNT1, C3orf80, IL12A-AS1	rs116423146-?		3E-9	(dominant)	0.273	[-0.47376-1.01976] unit increase	Illumina [1492601] (imputed)	N
1808	chr3	160396862	160396863	rs116423146	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3q25.33	ARL14, PPM1L, KPNA4, SCARNA7, TRIM59, SMC4, MIR16-2, MIR15B, IFT80, B3GALNT1, C3orf80, IL12A-AS1	rs116423146-?		2E-8	(additive)	0.244	[0.16-0.33] unit increase	Illumina [1492601] (imputed)	N
1808	chr3	160419345	160419346	rs190431552	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs190431552-G	1.0	3E-6	(AA)	0.457	unit increase	Illumina [NR] (imputed)	N
1808	chr3	160419345	160419346	rs190431552	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs190431552-G	1.0	7E-7	(AA)	2.422	NR unit increase	Illumina [NR] (imputed)	N
1808	chr3	160429699	160429700	rs7646957	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q25.33	PPM1L	rs7646957-?	NR	3E-6	(xanthosine)	0.15855232	[0.093-0.225] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1808	chr3	160429868	160429869	rs7624766	24583629	Senapati S	2014-02-27	Pharmacogenet Genomics	Genome-wide analysis of methotrexate pharmacogenomics in rheumatoid arthritis shows multiple novel risk variants and leads for TYMS regulation.	Response to methotrexate in rheumatoid arthritis	281 Indian ancestry good responder cases, 157 Indian ancestry poor responder cases	NA	3q25.33	PPM1L, ARL14	rs7624766-G	0.30	4E-7		2.28	[1.66-3.15]	Illumina [432662]	N
1809	chr3	160471754	160471755	rs146844429	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs146844429-G	0.999	4E-7	(AA)	0.468	unit increase	Illumina [NR] (imputed)	N
1809	chr3	160471754	160471755	rs146844429	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	Intergenic	rs146844429-G	0.999	3E-7	(AA)	2.36	NR unit increase	Illumina [NR] (imputed)	N
1809	chr3	160553355	160553356	rs186451686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs186451686-A	1.0	2E-6	(AA)	0.454	unit increase	Illumina [NR] (imputed)	N
1809	chr3	160553355	160553356	rs186451686	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs186451686-A	1.0	7E-7	(AA)	2.398	NR unit increase	Illumina [NR] (imputed)	N
1809	chr3	160554863	160554864	rs149794616	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs149794616-C	0.999	1E-6	(AA)	0.45	unit increase	Illumina [NR] (imputed)	N
1809	chr3	160554863	160554864	rs149794616	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs149794616-C	0.999	6E-7	(AA)	2.324	NR unit increase	Illumina [NR] (imputed)	N
1809	chr3	160562315	160562316	rs188531091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs188531091-G	1.0	2E-6	(AA)	0.454	unit increase	Illumina [NR] (imputed)	N
1809	chr3	160562315	160562316	rs188531091	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs188531091-G	1.0	7E-7	(AA)	2.397	NR unit increase	Illumina [NR] (imputed)	N
1810	chr3	160581436	160581437	rs150391545	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs150391545-G	1.0	2E-6	(AA)	2.295	NR unit increase	Illumina [NR] (imputed)	N
1810	chr3	160590494	160590495	rs182275499	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs182275499-G	0.999	1E-6	(AA)	2.294	NR unit increase	Illumina [NR] (imputed)	N
1810	chr3	160601657	160601658	rs182750324	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs182750324-A	1.0	3E-6	(AA)	0.448	unit increase	Illumina [NR] (imputed)	N
1810	chr3	160601657	160601658	rs182750324	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs182750324-A	1.0	8E-7	(AA)	2.373	NR unit increase	Illumina [NR] (imputed)	N
1810	chr3	160614219	160614220	rs17236697	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3q25.33	PPM1L	rs17236697-G	0.985	3E-6	(AA)	0.125	NR unit increase	Illumina [NR] (imputed)	N
1811	chr3	160716786	160716787	rs145882615	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs145882615-G	1.0	4E-6	(AA)	0.435	unit increase	Illumina [NR] (imputed)	N
1811	chr3	160716786	160716787	rs145882615	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q25.33	PPM1L	rs145882615-G	1.0	3E-6	(AA)	2.216	NR unit increase	Illumina [NR] (imputed)	N
1811	chr3	160728058	160728059	rs4613509	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q26.1	NR	rs4613509-?	NR	4E-6				Illumina [7427422] (imputed)	N
1811	chr3	160755061	160755062	rs9831488	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q26.1		rs9831488-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1811	chr3	160763468	160763469	rs6769642	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q26.1		rs6769642-A	0.4815	3E-13		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1811	chr3	160765382	160765383	rs191390172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	PPM1L	rs191390172-C	1.0	4E-6	(AA)	0.435	unit increase	Illumina [NR] (imputed)	N
1811	chr3	160765382	160765383	rs191390172	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	PPM1L	rs191390172-C	1.0	3E-6	(AA)	2.22	NR unit increase	Illumina [NR] (imputed)	N
1811	chr3	160776963	160776964	rs9290065	22446961	Lee YC	2012-03-25	Nat Genet	Two new susceptibility loci for Kawasaki disease identified through genome-wide association analysis.	Kawasaki disease	622 Han Chinese ancestry cases, 1,107 Han Chinese ancestry controls	261 Han Chinese ancestry cases, 550 Han Chinese ancestry controls	3q26.1	PPM1L	rs9290065-G	0.020	9E-6		2.119	[1.508-2.979]	Affymetrix [716935]	N
1811	chr3	160787501	160787502	rs2306061	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3q26.1	PPM1L	rs2306061-T	0.496	8E-14		1.0269		Affymetrix [11880941] (imputed)	N
1811	chr3	160820523	160820524	rs4557202	23599027	Demerath EW	2013-04-17	Hum Mol Genet	Genome-wide association study of age at menarche in African-American women.	Menarche (age at onset)	18,089 African American individuals	2,850 African American individuals, 87,802 European ancestry inidividuals	3q26.1	B3GALNT1	rs4557202-C	0.43	2E-6	(AA)	4.21	[2.49-5.93] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1811	chr3	160821968	160821969	rs7617204	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.1		rs7617204-A	0.5223	4E-12		0.0097	[0.007-0.0124] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1812	chr3	160831573	160831574	rs192294496	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs192294496-T	1.0	3E-6	(AA)	0.449	unit increase	Illumina [NR] (imputed)	N
1812	chr3	160831573	160831574	rs192294496	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs192294496-T	1.0	8E-7	(AA)	2.389	NR unit increase	Illumina [NR] (imputed)	N
1812	chr3	160844941	160844942	rs7633857	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	3q26.1	NR	rs7633857-C	0.5184	5E-8		0.014272967	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
1812	chr3	160869128	160869129	rs4618258	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3q26.1	NR	rs4618258-G	0.468191	2E-8		0.039658174	[0.026-0.053] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1812	chr3	160881474	160881475	rs187303806	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs187303806-C	1.0	5E-6	(AA)	0.432	unit increase	Illumina [NR] (imputed)	N
1812	chr3	160881474	160881475	rs187303806	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs187303806-C	1.0	1E-6	(AA)	2.295	NR unit increase	Illumina [NR] (imputed)	N
1812	chr3	160891726	160891727	rs1599374	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3q26.1	B3GALNT1, NMD3	rs1599374-A	0.5163	3E-15		1.0285		Affymetrix [11880941] (imputed)	N
1812	chr3	160891726	160891727	rs1599374	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.1	B3GALNT1, NMD3	rs1599374-A	0.5163	3E-15		1.0313823		Affymetrix [11880941] (imputed)	N
1812	chr3	160897914	160897915	rs6441364	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.1	Intergenic	rs6441364-T	0.6813	1E-8	(MTAG)	0.008	[0.0053-0.0107] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1812	chr3	160899973	160899974	rs6765270	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q26.1	NR	rs6765270-?	NR	3E-6				Illumina [7427422] (imputed)	N
1812	chr3	160914813	160914814	rs13059758	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q26.1		rs13059758-C	NR	4E-8		0.0143	[0.0092-0.0194] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
1813	chr3	160956773	160956774	rs140014224	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	NMD3	rs140014224-G	1.0	4E-6	(AA)	0.436	unit increase	Illumina [NR] (imputed)	N
1813	chr3	160956773	160956774	rs140014224	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	NMD3	rs140014224-G	1.0	8E-7	(AA)	2.355	NR unit increase	Illumina [NR] (imputed)	N
1813	chr3	160981547	160981548	rs7615592	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	3q26.1	NR	rs7615592-?	0.4809	2E-6		0.052155	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1813	chr3	160998301	160998302	rs2404340	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3q26.1	NMD3, SPTSSB	rs2404340-C	0.5045999999999999	2E-14		1.0270104		Affymetrix [11880941] (imputed)	N
1813	chr3	161019557	161019558	rs9790314	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q26.1	NR	rs9790314-?	NR	9E-6				Illumina [7427422] (imputed)	N
1813	chr3	161041206	161041207	rs142560558	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs142560558-G	1.0	3E-6	(AA)	0.44	unit increase	Illumina [NR] (imputed)	N
1813	chr3	161041206	161041207	rs142560558	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs142560558-G	1.0	9E-7	(AA)	2.349	NR unit increase	Illumina [NR] (imputed)	N
1813	chr3	161055814	161055815	rs192376484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs192376484-A	1.0	2E-6	(AA)	0.445	unit increase	Illumina [NR] (imputed)	N
1813	chr3	161055814	161055815	rs192376484	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs192376484-A	1.0	5E-7	(AA)	2.355	NR unit increase	Illumina [NR] (imputed)	N
1813	chr3	161062723	161062724	rs163327	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q26.1	SPTSSB	rs163327-A	0.5456	2E-8		0.013275622	[0.0086-0.0179] unit decrease	Affymetrix [11515109] (imputed)	N
1813	chr3	161068565	161068566	rs67460515	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	3q26.1	NR	rs67460515-C	NR	1E-6		1.059	[1.04-1.08]	Illumina [11933700] (imputed)	N
1813	chr3	161077629	161077630	rs1450522	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3q26.1	SPTSSB	rs1450522-A		6E-8		0.0797	[0.051-0.109] unit decrease	Illumina [NR]	N
1813	chr3	161077629	161077630	rs1450522	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3q26.1	SPTSSB	rs1450522-A	0.6742	5E-10		0.0616	[0.042-0.081] unit decrease	NR [7784415] (imputed)	N
1814	chr3	161098551	161098552	rs465985	32844198	Dumitrescu L	2020-08-01	Brain	Genetic variants and functional pathways associated with resilience to Alzheimer's disease.	Combined resilience (covariance of educational attainment with residual cognitive resilience)	3,820 European ancestry cognitively unimpaired individuals	NA	3q26.1	NR	rs465985-?	0.4817	5E-6		0.050528	NR unit decrease	Affymetrix, Illumina [4840740] (imputed)	N
1814	chr3	161109915	161109916	rs16832246	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.1		rs16832246-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1814	chr3	161128940	161128941	rs73021449	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3q26.1	OTOL1	rs73021449-A	0.3579	3E-8		0.011177166	[0.0072-0.0151] unit increase	Illumina [9339358] (imputed)	N
1814	chr3	161135637	161135638	rs2004862	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q26.1	NR	rs2004862-?	NR	7E-6				Illumina [7427422] (imputed)	N
1814	chr3	161138858	161138859	rs117936590	30659259	Imaizumi A	2019-01-18	Eur J Hum Genet	Genetic basis for plasma amino acid concentrations based on absolute quantification: a genome-wide association study in the Japanese population.	Plasma free amino acid levels	1,338 Japanese ancestry individuals	NA	3q26.1	RPL23AP42	rs117936590-C	0.04	2E-8	(Leu)	0.52	[0.34-0.7] unit increase	Illumina [1288202] (imputed)	N
1814	chr3	161148945	161148946	rs9858921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.1		rs9858921-A	0.4661	5E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1814	chr3	161215357	161215358	rs872676	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.1	Intergenic	rs872676-T	0.6739	4E-13	(MTAG)	0.0101	[0.0074-0.0128] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1815	chr3	161225751	161225752	rs62278294	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q26.1	Intergenic	rs62278294-G	0.6378	1E-9		0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1815	chr3	161263938	161263939	rs2221516	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q26.1	Intergenic	rs2221516-T	0.5963	2E-12	(MTAG)	0.0118	[0.0085-0.0151] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1815	chr3	161278860	161278861	rs193109980	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	3q26.1	FRMD4B	rs193109980-A	0.0112	3E-6	(Subset)	1.1388	[0.66-1.62] unit decrease	Illumina [up to 38043574] (imputed)	N
1815	chr3	161278860	161278861	rs193109980	27846281	Galesloot TE	2016-11-15	PLoS One	Meta-GWAS and Meta-Analysis of Exome Array Studies Do Not Reveal Genetic Determinants of Serum Hepcidin.	Hepcidin/ferritin ratio	1495 European ancestry individuals without iron deficiency or clinical inflammation, 324 European ancestry individuals, 1206 Val Borbera (founder/genetic isolated) individuals without iron deficiency or clinical inflammation, 274 Val Borbera (founder/genetic isolated) individuals, 2,695 European ancestry individuals without iron deficiency or clinical inflammation, 207 individuals	NA	3q26.1	FRMD4B	rs193109980-A	0.0109	8E-6		1.0001	[0.56-1.44] unit decrease	Illumina [up to 38043574] (imputed)	N
1815	chr3	161279821	161279822	rs150383292	30837455	Dudding T	2019-03-05	Nat Commun	Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.	Mouth ulcers	47,079 British or unknown ancestry cases, 414,027 British or unknown ancestry controls	98,298 cases, 247,446 controls	3q26.1		rs150383292-T	0.02178800000000003	1E-28		1.2205118	[1.18-1.27]	Affymetrix, Illumina [9851866] (imputed)	N
1815	chr3	161299997	161299998	rs7642359	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q26.1	Intergenic	rs7642359-T	0.4539	7E-9	(MTAG)	0.0104	[0.0069-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1815	chr3	161307315	161307316	rs7620901	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	3q26.1	OTOL1	rs7620901-T	0.4167	8E-9		0.013057636	[0.0086-0.0175] unit decrease	Affymetrix [11514936] (imputed)	N
1816	chr3	161392575	161392576	rs6808138	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	3q26.1	intergenic	rs6808138-?	NR	8E-6	(binary)			Perlegen [429981]	N
1816	chr3	161392575	161392576	rs6808138	18821565	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.	Hyperactive-impulsive symptoms	930 European ancestry trios	NA	3q26.1	intergenic	rs6808138-?	NR	5E-6	(binary)			Perlegen [429981]	N
1816	chr3	161421866	161421867	rs57444720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q26.1		rs57444720-C	NR	3E-10		0.0134	[0.0093-0.0175] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1816	chr3	161434565	161434566	rs6765877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.1		rs6765877-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1816	chr3	161447372	161447373	rs4856720	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q26.1		rs4856720-C	NR	1E-8		0.0134	[0.0089-0.0179] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1816	chr3	161453945	161453946	rs507856	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.1	NA	rs507856-T	0.5639	3E-10		0.0108	[0.0075-0.0141] unit increase	NR [~ 27400000] (imputed)	N
1816	chr3	161455961	161455962	rs80021942	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.1	NR	rs80021942-C	NR	1E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1816	chr3	161467130	161467131	rs28886334	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q26.1	NR	rs28886334-?	NR	4E-8		1.05411	[1.04-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
1817	chr3	161482644	161482645	rs308690	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.1	NR	rs308690-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
1817	chr3	161485406	161485407	rs308693	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.1	OTOL1	rs308693-G	NR	1E-7	(EA)	1.064	[1.04-1.09]	Illumina [6627481] (imputed)	N
1817	chr3	161491830	161491831	rs192812	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.1	OTOL1	rs192812-C	NR	3E-8		1.0570824	[1.04-1.08]	Illumina [6627481] (imputed)	N
1817	chr3	161491830	161491831	rs192812	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q26.1	intergenic	rs192812-C	NR	9E-8		1.0537407	[1.03-1.07]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1817	chr3	161493360	161493361	rs308705	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q26.1	Intergenic	rs308705-A	0.4776	2E-8	(MTAG)	0.0093	[0.006-0.0126] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1817	chr3	161523262	161523263	rs1436738	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (mixed linear model)	278 Chinese ancestry dizygotic twins	NA	3q26.1	NR	rs1436738-?	NR	3E-6		117.3295	[68.8-165.86] unit increase	Illumina [5432814] (imputed)	N
1817	chr3	161523262	161523263	rs1436738	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (kinship model)	278 Chinese ancestry dizygotic twins	NA	3q26.1	NR	rs1436738-?	NR	2E-6		117.1424	[68.78-165.51] unit increase	Illumina [5432814] (imputed)	N
1817	chr3	161551803	161551804	rs1157705	26741287	Milet J	2016-01-07	Genes Immun	Genome-wide association study of antibody responses to Plasmodium falciparum candidate vaccine antigens.	IgG1 response to Plasmodium falciparum antigen (GLURP)	528 Sereer ancestry individuals from 130 families	NA	3q26.1	SPTSSB	rs1157705-?	NR	9E-6		4.433	NR z score increase	Affymetrix [174950]	N
1817	chr3	161587165	161587166	rs2220684	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q26.1	NR	rs2220684-?		1E-7				Illumina [4322238] (imputed)	N
1818	chr3	161655422	161655423	rs4455332	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	3q26.1	OTOL1, LINC01192	rs4455332-A	0.21	2E-6		0.24	unit increase	Illumina [5600000] (imputed)	N
1818	chr3	161672358	161672359	rs62278738	29538362	Jilling T	2018-03-14	Pediatr Res	Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome eight.	Surgical necrotising enterocolitis in extremely premature birth	20 African American cases, 6 Hispanic Caucasian cases, 4 European ancestry cases,  283 African American controls, 130 Hispanic Caucasian controls, 133 European ancestry controls,	NA	3q26.1	NR	rs62278738-?	NR	5E-6				Illumina [8270200] (imputed)	N
1818	chr3	161722613	161722614	rs190957092	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs190957092-C	0.999	2E-7	(AA)	0.425	unit increase	Illumina [NR] (imputed)	N
1818	chr3	161722613	161722614	rs190957092	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.1	Intergenic	rs190957092-C	0.999	9E-8	(AA)	2.21	NR unit increase	Illumina [NR] (imputed)	N
1819	chr3	161761865	161761866	rs9850597	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.1	NR	rs9850597-A	0.816	9E-13		0.00995091	[0.0072-0.0127] unit decrease	NR [9732723] (imputed)	N
1819	chr3	161761865	161761866	rs9850597	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q26.1	NR	rs9850597-A	0.816	2E-8		0.018570986	[0.012-0.025] unit decrease	NR [~ 10000000] (imputed)	N
1819	chr3	161780487	161780488	rs6804239	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q26.1	NR	rs6804239-?	NR	1E-13		1.066735	[1.05-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
1819	chr3	161780487	161780488	rs6804239	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.1	TOMM22P6	rs6804239-C	NR	9E-10		1.0604454	[1.04-1.08]	Illumina [6627481] (imputed)	N
1819	chr3	161780487	161780488	rs6804239	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q26.1	OTOL1	rs6804239-C	NR	8E-10		1.0604454	[1.04-1.08]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1819	chr3	161821523	161821524	rs1581057	24564958	St Pourcain B	2014-02-24	Mol Autism	Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence.	Social communication problems	Up to 5,628 European ancestry individuals	NA	3q26.1	intergenic	rs1581057-C	0.69	6E-6	(Age 8)	0.13	[0.071-0.189] unit increase	Illumina [2293137] (imputed)	N
1819	chr3	161831674	161831675	rs4856763	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	3q26.1	NR	rs4856763-?	NR	2E-10		1.0869565		Affymetrix, Illumina [9938587] (imputed)	N
1819	chr3	161856966	161856966	rs201479737	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	3q26.1	Intergenic	rs201479737-C	0.9432794	2E-6		0.440257	[0.26-0.62] unit decrease	Illumina [6952813] (imputed)	N
1820	chr3	161914911	161914912	rs989197	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.1	NR	rs989197-T	NR	7E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
1821	chr3	162015129	162015130	rs79221325	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q26.1	NR	rs79221325-G	NR	7E-8	(GEE model)	1.4982	[0.95-2.04] unit increase	NR [NR] (imputed)	N
1821	chr3	162069008	162069009	rs12493123	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Reading and spelling	6,649 European ancestry children and adolescents	NA	3q26.1	intergenic	rs12493123-?	NR	2E-6				Illumina [~ 2400000] (imputed)	N
1821	chr3	162131407	162131408	rs12636148	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q26.1	LOC131149	rs12636148-C	0.11	5E-6	(men)			Affymetrix, Illumina [2500000] (imputed)	N
1822	chr3	162164255	162164256	rs12638306	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q26.1	NR	rs12638306-C	0.098	6E-6	(IFNalpha_DRPQ_of_CD20p)			Illumina [5084123] (imputed)	N
1822	chr3	162199503	162199504	rs7432328	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (toxicity, rectal bleeding)	1,487 European ancestry individuals	NA	3q26.1	intergenic	rs7432328-A	0.06	3E-6		3.36	[2.05-5.59]	NR [~ 38000000] (imputed)	N
1822	chr3	162260778	162260779	rs966852	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls	NA	3q26.1	OTOL1, LINC01192	rs966852-T	0.4898	8E-6		0.1305	[0.073-0.188] unit increase	NR [NR] (imputed)	N
1823	chr3	162276404	162276405	rs1478173	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	JT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	3q26.1	intergenic	rs1478173-?	NR	1E-12	(AA)	15.0	[10.88-19.12] ms decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1823	chr3	162281635	162281636	rs7646242	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	3q26.1	OTOL1, LINC01192	rs7646242-?	0.5798	5E-7		4.8543687		Affymetrix [757439]	N
1823	chr3	162364344	162364345	rs78787277	33959940	Chen Y	2021-05-06	Br J Dermatol	A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans.	Facial wrinkles (forehead)	6,254 Latin American individuals	NA	3q26.1		rs78787277-C	NR	5E-8	(women)	0.33	NR unit increase	Illumina [8703729] (imputed)	N
1823	chr3	162382516	162382517	rs2088315	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	3q26.1	OTOL1, LINC01192	rs2088315-?	0.6755	8E-7		5.263158		Affymetrix [757439]	N
1823	chr3	162383211	162383212	rs73165522	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal endothelial cell shape (percentage of hexagonally shaped cells)	6,125 Icelandic ancestry individuals	NA	3q26.1	NR	rs73165522-T		9E-7		0.145	[NR] unit decrease	Illumina [NR]	N
1823	chr3	162386890	162386891	rs13063882	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia x sex interaction	31,567 European ancestry cases, 37,494 European ancestry controls, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	NA	3q26.1	OTOL1, LINC01192	rs13063882-T	0.5499	9E-6		0.1202	[0.067-0.173] unit decrease	NR [NR] (imputed)	N
1826	chr3	162681994	162681995	rs1425609	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to death)	25,007 European ancestry individuals	10,411 European ancestry individuals	3q26.1	OTOL1	rs1425609-A	0.38	1E-6		0.08	[0.04-0.12] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1826	chr3	162745048	162745049	rs71315930	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		AC128685.1	rs71315930-?	NR	1E-9	(female)	0.48318	[NR] unit increase	Affymetrix [NR] (imputed)	N
1826	chr3	162787999	162788000	rs183715753	34737426	Jiang L	2021-11-04	Nat Genet	A generalized linear mixed model association tool for biobank-scale data.	Treatment or medication use - epanutin 25mg capsule (UKB data field 20003_1140872112)	321 European ancestry cases, 455,955 European ancestry controls	NA	3q26.1		rs183715753-T	0.002397	4E-9		7.53	[5.03-10.03] unit increase	NR [11842647] (imputed)	N
1827	chr3	162834300	162834301	rs9824150	22864933	O'Donnell PH	2012-01-03	Cancer	Identification of novel germline polymorphisms governing capecitabine sensitivity.	Capecitabine sensitivity	Up to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines	NA	3q26.1	intergenic	rs9824150-?	NR	7E-6				NR [~ 2000000]	N
1828	chr3	162966686	162966687	rs184700722	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	3q26.1	LINC01192	rs184700722-T	0.011	4E-9	(IL-8)	16.515	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
1828	chr3	162971105	162971106	rs7627798	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.1	NR	rs7627798-?	NR	3E-8				Affymetrix [NR]	N
1828	chr3	163037446	163037447	rs62295801	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3q26.1	LINC01192	rs62295801-G	NR	5E-10	(Lactobacillales order)	0.27	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
1828	chr3	163051401	163051402	rs16846794	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	LOC131149	rs16846794-?	NR	3E-7	(allantoin)	0.45119765	[0.28-0.62] unit increase	Affymetrix [at least 2500000] (imputed)	N
1829	chr3	163174460	163174461	rs16846897	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	SLITRK3	rs16846897-?	NR	2E-7	(allantoin)	0.46693236	[0.29-0.64] unit increase	Affymetrix [at least 2500000] (imputed)	N
1830	chr3	163243726	163243727	rs17477644	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in normal cognition	305 European ancestry cognitively normal individuals	NA	3q26.1	RNU7-82P, MIR1263	rs17477644-T	0.03	8E-7		1.4	[0.85-1.95] unit increase	Illumina [8248960] (imputed)	N
1830	chr3	163258975	163258976	rs6804755	30926877	Brcic L	2019-03-29	Sci Rep	Genome-wide association analysis suggests novel loci underlying thyroid antibodies in Hashimoto's thyroiditis.	Anti-thyroid peroxidase (TPOAb) levels in Hashimoto's thyroiditis	405 European ancestry cases	NA	3q26.1	LINC01192	rs6804755-T	0.534	6E-6		0.322	[0.18-0.46] unit increase	Illumina [6007542] (imputed)	N
1834	chr3	163737249	163737250	rs16833934	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	3q26.1	MIR1263	rs16833934-G	0.26	7E-7	(EA, MAP, Age 20-29)	1.33	[0.8-1.86] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1834	chr3	163737249	163737250	rs16833934	24954895	Simino J	2014-06-19	Am J Hum Genet	Gene-age interactions in blood pressure regulation: a large-scale investigation with the CHARGE, Global BPgen, and ICBP Consortia.	Blood pressure	55,796 European ancestry individuals	43,445 European ancestry individuals, 1,849 Chinese ancestry individuals, 2,502 Malay ancestry individuals, 2,476 Asian Indian ancestry individuals, 1,855 Asian ancestry individuals	3q26.1	MIR1263	rs16833934-G	0.26	1E-8	(EA, DBP, Age 20-29)	1.63	[1.06-2.2] mmHg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1834	chr3	163761963	163761964	rs7427021	19416921	Scott LJ	2009-05-05	Proc Natl Acad Sci U S A	Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.	Bipolar disorder	3,683 European ancestry cases, 14,507 European ancestry controls	NA	3q26.1	NR	rs7427021-G	0.56	5E-6		1.16	[1.09-1.24]	Affymetrix, Illumina [2366197] (imputed)	N
1834	chr3	163785050	163785051	rs11921904	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.1	NR	rs11921904-?	NR	9E-8				Affymetrix [NR]	N
1835	chr3	163855068	163855069	rs78661745	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	3q26.1	intergenic	rs78661745-C	0.908	7E-6		0.068	[0.039-0.097] unit decrease	Illumina [6150213] (imputed)	N
1835	chr3	163917366	163917367	rs2753112	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Abstraction and mental flexibility	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	3q26.1	intergenic	rs2753112-C	NR	7E-6		0.14389643	[0.083-0.205] unit decrease	Illumina [> 6200000] (imputed)	N
1837	chr3	164132592	164132593	rs113578996	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q26.1	intergenic	rs113578996-A	0.0120147691364842	1E-6	(G_Collinsella_HB)	1.29012	[0.77-1.81] unit decrease	Illumina [7711310] (imputed)	N
1837	chr3	164206764	164206765	rs76585299	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs76585299-T	0.02265	3E-9	(FTH1)	0.129	NR unit increase	Illumina [1671387] (imputed)	N
1838	chr3	164238955	164238956	rs892761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q26.1		rs892761-T	NR	2E-10		0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1838	chr3	164238955	164238956	rs892761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q26.1		rs892761-T	NR	1E-9		0.0116	[0.0079-0.0153] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1838	chr3	164242047	164242048	rs6779203	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (decreased sleep) in depressive disorders	144 European ancestry cases, 219 European ancestry controls	NA	3q26.1		rs6779203-?	NR	7E-6		2.018		Illumina [5932083] (imputed)	N
1840	chr3	164506246	164506246	rs57102816	34255042	Schmitz D	2021-07-13	J Clin Endocrinol Metab	Genome-Wide Association Study of Estradiol Levels, and the Causal Effect of Estradiol on Bone Mineral Density.	Estradiol levels	13,367 European ancestry male cases, 134,323 European ancestry male controls	NA	3q26.1	LINC01324	rs57102816-TA	0.257	3E-8		1.084	[1.054-1.115]	Affymetrix [7871717] (imputed)	N
1840	chr3	164589938	164589939	rs2168784	24962325	Kapoor M	2014-06-11	Drug Alcohol Depend	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Alcohol dependence (age at onset)	685 European ancestry cases, 1,103 European ancestry controls from 118 families	NA	3q26.1	intergenic	rs2168784-T	0.11	5E-9		1.46	[1.34-1.58]	Illumina [4058415] (imputed)	N
1841	chr3	164639621	164639622	rs6775748	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid vs negative)	9,913 European ancestry cases, 85,072 European ancestry controls, 2,553 Hispanic or Latin American cases, 13,086 Hispanic or Latin American controls, 506 Black or African American cases, 3,110 Black or African American controls	NA	3q26.1		rs6775748-?	NR	7E-6		0.10853305	[0.062-0.156] unit decrease	Illumina [9939936] (imputed)	N
1842	chr3	164807678	164807679	rs9825346	28588231	Li M	2017-06-06	Sci Rep	Genome-wide association study of 1,5-anhydroglucitol identifies novel genetic loci linked to glucose metabolism.	1,5-anhydroglucitol levels	7,550 European ancestry individuals	8,790 European ancestry individuals, 2,030 African American individuals	3q26.1	SI	rs9825346-G	0.41	4E-17	(EA)	8.41	z-score decrease	Affymetrix [at least 8500000] (imputed)	N
1843	chr3	164910355	164910356	rs62282368	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLITRK3	5,366 Icelandic ancestry individuals	NA	3q26.1		rs62282368-A	0.1093	4E-31		0.352482	[0.29-0.41] unit decrease	Illumina [7506463] (imputed)	N
1843	chr3	164911291	164911295	rs398062996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	SLITRK3	rs398062996-A	0.127	2E-49	(SLIT and NTRK-like protein 3, SLITRK3.10565.19.3)	0.54	[0.46-0.62] unit decrease	Affymetrix [10572788] (imputed)	N
1843	chr3	164911693	164911694	rs62282371	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	SLITRK3	rs62282371-T	0.88703125	4E-19	(SLITRK3, 10565_19_3)	0.34499037	[0.27-0.42] unit increase	Illumina [> 1000000] (imputed)	N
1843	chr3	164967757	164967758	rs12494164	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.1	NR	rs12494164-?	NR	2E-6		4.757	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1843	chr3	164972839	164972840	rs6799968	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	SI	rs6799968-?	NR	5E-6	(LPC 20:3)	0.19909276	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1844	chr3	165038926	165038927	rs9830810	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q26.1	NR	rs9830810-T	0.314	8E-6	(IFNAR2_of_CD4p_T)			Illumina [5084123] (imputed)	N
1844	chr3	165064484	165064485	rs77719492	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	3q26.1	intergenic	rs77719492-?	NR	4E-6		0.272	[0.13-0.41] unit increase	Illumina [at least 13000000] (imputed)	N
1844	chr3	165125158	165125159	rs9878522	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3q26.1	intergenic	rs9878522-?	NR	6E-6	(SF3)			Affymetrix [5476100] (imputed)	N
1845	chr3	165280208	165280209	rs1523288	20445134	Smith NL	2010-05-05	Circ Cardiovasc Genet	Association of genome-wide variation with the risk of incident heart failure in adults of European and African ancestry: a prospective meta-analysis from the cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.	Heart failure	20,926 European ancestry individuals, 2,895 African ancestry individuals	NA	3q26.1	BCHE	rs1523288-?	0.65	6E-6	(EA)	1.15	[0.98-1.35]	Affymetrix, Illumina [2478304] (imputed)	N
1846	chr3	165313453	165313454	rs73032872	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs73032872-A	0.01045	2E-9	(LGMN)	0.006966	NR unit increase	Illumina [1671387] (imputed)	N
1846	chr3	165345200	165345201	rs3107575	26835600	Hu Y	2016-02-02	Nat Commun	GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.	Morning vs. evening chronotype	38,937 European ancestry morning chronotype individuals, 50,346 European ancestry evening chronotype individuals	NA	3q26.1	NR	rs3107575-?	NR	6E-6				Illumina [7427422] (imputed)	N
1847	chr3	165422824	165422825	rs624222	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.1	NR	rs624222-?	NR	2E-6				Affymetrix [NR]	N
1847	chr3	165480099	165480100	rs6445035	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXPH2	5,359 Icelandic ancestry individuals	NA	3q26.1		rs6445035-A	0.1883	2E-24		0.241522	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165480099	165480100	rs6445035	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein COPS7B	5,360 Icelandic ancestry individuals	NA	3q26.1		rs6445035-A	0.1883	1E-12		0.165317	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165480099	165480100	rs6445035	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOC3	5,366 Icelandic ancestry individuals	NA	3q26.1		rs6445035-A	0.1883	1E-24		0.246496	[0.2-0.29] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165480099	165480100	rs6445035	23508960	Zhou G	2013-03-18	J Biol Chem	Aspirin hydrolysis in plasma is a variable function of butyrylcholinesterase and platelet-activating factor acetylhydrolase 1b2 (PAFAH1b2).	Aspirin hydrolysis (plasma)	2,054 European ancestry individuals		3q26.1	BCHE	rs6445035-A	NR	9E-17				Affymetrix [2421779] (imputed)	N
1847	chr3	165480899	165480900	rs4680604	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IRF6	5,367 Icelandic ancestry individuals	NA	3q26.1		rs4680604-G	0.307	3E-18		0.176236	[0.14-0.22] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165480899	165480900	rs4680604	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein EHMT2	5,366 Icelandic ancestry individuals	NA	3q26.1		rs4680604-G	0.307	1E-13		0.152554	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165480899	165480900	rs4680604	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARL11	5,362 Icelandic ancestry individuals	NA	3q26.1		rs4680604-G	0.307	1E-14		0.15339	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SEC13	5,355 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	3E-16		0.187251	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSD2	5,364 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	1E-35		0.29793	[0.25-0.34] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PPT1	5,360 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	2E-19		0.211052	[0.17-0.26] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLA2G7	5,366 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	2E-36		0.295963	[0.25-0.34] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFKFB3	5,350 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	2E-14		0.176853	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL10RA	5,353 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	3E-12		0.163771	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HSPA1L	5,352 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	4E-14		0.171337	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CREBBP	5,344 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	4E-12		0.149552	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPT1B	5,364 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	2E-25		0.250223	[0.2-0.3] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAMP	5,367 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	5E-41		0.323352	[0.28-0.37] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein C2orf40	5,353 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	2E-12		0.16631	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCHE	5,337 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	4E-69		0.368024	[0.33-0.41] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARHGAP30	5,366 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	6E-28		0.261495	[0.21-0.31] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein APOE	5,366 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	6E-13		0.175074	[0.13-0.22] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADM	5,353 Icelandic ancestry individuals	NA	3q26.1		rs73165060-A	0.188	1E-14		0.176368	[0.13-0.22] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165481417	165481418	rs73165060	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs73165060-A	0.202	9E-38	(Estrogen sulfotransferase, SULT1E1.9878.3.3)	0.39	[0.33-0.45] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	9E-9	(DCUN1D5, 8760_10_3)	0.17737682	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	8E-9	(AZGP1, 9312_8_3)	0.17863223	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	8E-47	(BCHE, 8239_223_3)	0.44345048	[0.38-0.5] unit increase	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	8E-30	(PSD2, 9118_7_3)	0.34836394	[0.29-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	8E-11	(CCDC126, 6388_21_3)	0.20455274	[0.14-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	7E-9	(RAB17, 11118_107_3)	0.17662315	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	7E-12	(CREBBP, 13614_6_3)	0.21146932	[0.15-0.27] unit increase	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	5E-9	(CLK2, 11327_56_3)	0.18152641	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	5E-13	(SEC13, 14689_3_3)	0.22626577	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	5E-13	(BGN, 13690_26_3)	0.22275177	[0.16-0.28] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	4E-9	(TP53I11, 13022_20_3)	0.18286797	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	4E-9	(IL10RA, 10344_334_3)	0.18102624	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	4E-9	(GAL3ST1, 8696_15_3)	0.17944528	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	4E-18	(CPT1B, 11709_29_3)	0.2705292	[0.21-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	3E-9	(CYP3A4, 2943_5_2)	0.1828239	[0.12-0.24] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	3E-34	(PMEPA1, 6936_7_3)	0.37552825	[0.32-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	3E-29	(CAMP, 9384_17_3)	0.35331902	[0.29-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	3E-10	(PPT1, 9244_27_3)	0.19421501	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	2E-9	(HSPA1L, 12041_33_3)	0.18866788	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	2E-21	(ARHGAP30, 12807_89_3)	0.29016453	[0.23-0.35] unit increase	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	2E-18	(APOC3, 6461_54_3)	0.27363697	[0.21-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	2E-15	(NXPH2, 9511_61_3)	0.24859339	[0.19-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-9	(PFKFB3, 12456_5_3)	0.18788964	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-9	(APOE, 2937_10_2)	0.1895757	[0.13-0.25] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-24	(PLA2G7, 5015_15_1)	0.31100878	[0.25-0.37] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-13	(ADM, 14115_34_3)	0.2310064	[0.17-0.29] unit increase	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-10	(C2orf40, 6362_6_3)	0.19886206	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q26.1	NR	rs62295996-G	0.81078125	1E-10	(APOE, 2418_55_9)	0.20114468	[0.14-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs62295996-A	0.202	2E-18	(Palmitoyl-protein thioesterase 1, PPT1.9244.27.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165482063	165482064	rs62295996	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs62295996-A	0.202	1E-18	(Coiled-coil domain-containing protein 126, CCDC126.6388.21.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165484400	165484401	rs4554007	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs4554007-A	0.203	7E-12	(Furin, FURIN.6276.16.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165486144	165486145	rs11720167	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	NR	rs11720167-G	0.203	2E-18	(Palmitoyl-protein thioesterase 1, PPT1.9244.27.3)	0.27	[0.21-0.33] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165490467	165490468	rs2668202	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CCDC126	5,365 Icelandic ancestry individuals	NA	3q26.1		rs2668202-A	0.3067	1E-20		0.191595	[0.15-0.23] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165490467	165490468	rs2668202	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BGN	5,357 Icelandic ancestry individuals	NA	3q26.1		rs2668202-A	0.3067	2E-24		0.202118	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165491279	165491280	rs1803274	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs1803274-T	0.203	3E-15	(Apolipoprotein M, APOM.10445.20.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
1847	chr3	165491279	165491280	rs1803274	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	3q26.1	BCHE	rs1803274-T	0.21	6E-92	(BCHE)	0.365	[0.33-0.40] units/l decrease	Illumina [NR] (imputed)	N
1847	chr3	165491279	165491280	rs1803274	21862451	Benyamin B	2011-08-23	Hum Mol Genet	GWAS of butyrylcholinesterase activity identifies four novel loci, independent effects within BCHE and secondary associations with metabolic risk factors.	Butyrylcholinesterase levels	6,879 European ancestry adult individuals	1,260 European ancestry adult individuals, 652 European ancestry adolescent individuals	3q26.1	BCHE	rs1803274-T	0.21	6E-262		0.71	[0.67-0.75] SD decrease	Illumina [2383238] (imputed)	N
1847	chr3	165493453	165493454	rs2668206	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PMEPA1	5,365 Icelandic ancestry individuals	NA	3q26.1		rs2668206-A	0.3068	9E-53		0.307648	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
1847	chr3	165502708	165502709	rs2668196	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCHE	5,337 Icelandic ancestry individuals	NA	3q26.1		rs2668196-A	0.1441	1E-36		0.301503	[0.25-0.35] unit decrease	Illumina [7506463] (imputed)	N
1847	chr3	165502708	165502709	rs2668196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q26.1	Intergenic	rs2668196-A	0.1947	1E-9	(MTAG)	0.0127	[0.0086-0.0168] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1847	chr3	165502708	165502709	rs2668196	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.1	Intergenic	rs2668196-A	0.1904	2E-10	(MTAG)	0.0106	[0.0073-0.0139] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1847	chr3	165502708	165502709	rs2668196	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs2668196-T	0.817	5E-13	(Kinetochore protein NDC80 homolog, NDC80.12730.3.3)	0.23	[0.17-0.29] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	9E-31	(Protein TMEPAI, PMEPA1.6936.7.3)	0.31	[0.25-0.37] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	9E-14	(Histone-lysine N-methyltransferase EHMT2, EHMT2.5843.60.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	8E-13	(Transmembrane protein 59-like, TMEM59L.9959.60.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	2E-28	(Biglycan, BGN.13690.26.3)	0.3	[0.24-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	1E-26	(PH and SEC7 domain-containing protein 2, PSD2.9118.7.3)	0.29	[0.23-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	1E-12	(MAP kinase-activated protein kinase 5, MAPKAPK5.8382.47.3)	0.19	[0.13-0.25] unit decrease	Affymetrix [10572788] (imputed)	N
1847	chr3	165521844	165521844	rs11447348	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.1	BCHE	rs11447348-GA	0.703	1E-11	(ADP-ribosylation factor-like protein 11, ARL11.12433.8.3)	0.18	[0.12-0.24] unit decrease	Affymetrix [10572788] (imputed)	N
1848	chr3	165544301	165544302	rs2048493	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMCC3	5,366 Icelandic ancestry individuals	NA	3q26.1		rs2048493-G	0.3022	1E-13		0.153052	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
1848	chr3	165548528	165548529	rs1799807	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs1799807-C	0.0122	1E-9	(HSPA6)	0.03195	NR unit increase	Illumina [1671387] (imputed)	N
1848	chr3	165548528	165548529	rs1799807	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3q26.1	BCHE	rs1799807-T	0.9809	5E-8		0.0496	[0.032-0.067] unit increase	Affymetrix [19819130] (imputed)	N
1848	chr3	165548528	165548529	rs1799807	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.1	BCHE	rs1799807-T	0.9809	9E-12		0.0598	[0.043-0.077] unit increase	Affymetrix [19819130] (imputed)	N
1848	chr3	165548528	165548529	rs1799807	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.1	BCHE	rs1799807-T	0.9809	6E-7		0.0429	[0.026-0.06] unit increase	Affymetrix [19819130] (imputed)	N
1848	chr3	165548528	165548529	rs1799807	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q26.1		rs1799807-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1848	chr3	165560617	165560618	rs893522	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.1		rs893522-A	0.9112	1E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1848	chr3	165637528	165637529	rs4365667	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking quantity	1,837 Bangladeshi ancestry males, 198 Bangladeshi ancestry females	NA	3q26.1	NR	rs4365667-?		5E-6				Illumina [1211988] (imputed)	N
1849	chr3	165691663	165691664	rs6800964	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM52B	5,359 Icelandic ancestry individuals	NA	3q26.1		rs6800964-G	0.2476	2E-12		0.153316	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
1849	chr3	165693260	165693261	rs73031894	34031191	Kumar A	2021-05-24	Neurology	Association of SUMOlation Pathway Genes With Stroke in a Genome-wide Association Study in India.	Ischemic stroke (cardioembolic)	174 Indian ancestry cases, 2,154 Indian ancestry controls	NA	3q26.1		rs73031894-?	NR	5E-6		1.1004728	[1.0563281605859-1.14646234124097]	Illumina [up to 7827597] (imputed)	N
1849	chr3	165706854	165706855	rs12491503	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3q26.1	NR	rs12491503-?		6E-10		0.0142607	[0.0098-0.0188] unit decrease	Affymetrix [19400418] (imputed)	N
1849	chr3	165735727	165735728	rs143403401	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ARHGAP30	5,366 Icelandic ancestry individuals	NA	3q26.1		rs143403401-G	0.01361	2E-14		0.63666	[0.47-0.8] unit decrease	Illumina [7506463] (imputed)	N
1849	chr3	165767508	165767509	rs13080144	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	SLITRK3	rs13080144-?	NR	6E-6	(citrate)	0.1971594	[0.11-0.28] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1850	chr3	165814711	165814712	rs68128869	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Copper levels	587 Han Chinese ancestry individuals	NA	3q26.1		rs68128869-?	NR	4E-6		0.22	[-2.71608-3.15608] unit increase	Affymetrix [6423076] (imputed)	N
1850	chr3	165856588	165856589	rs34324672	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	3q26.1	NR	rs34324672-T	NR	5E-6		1.27		Affymetrix [8183964] (imputed)	N
1851	chr3	165939571	165939572	rs73176620	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	3q26.1	NR	rs73176620-A	0.05227	2E-6		0.3219	[0.19-0.46] unit increase	Illumina [10677593] (imputed)	N
1851	chr3	165965529	165965530	rs9831653	34304350	Lim WY	2021-07-25	Genes Genomics	Identification of genetic variants for blood insulin level in sex-stratified Korean population and evaluation of the causal relationship between blood insulin level and polycystic ovary syndrome.	Insulin levels	4,182 Korean ancestry male	NA	3q26.1		rs9831653-A	0.01	3E-6		1.94	unit increase	Affymetrix [NR] (imputed)	N
1851	chr3	166014468	166014469	rs509208	23419831	Ramanan VK	2013-02-19	Mol Psychiatry	APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study.	Alzheimer's disease biomarkers	555 European ancestry individuals	NA	3q26.1	BCHE	rs509208-G	0.16	3E-8	(Cortical Ab)			Illumina [6108668] (imputed)	N
1851	chr3	166032923	166032924	rs9283636	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	3q26.1	ZBBX, BCHE	rs9283636-?	NR	5E-7	(adjusted for dose, GFR & AST)	3.049	unit increase (EA, Australian cohort)	Illumina [610255]	N
1851	chr3	166047503	166047504	rs1574560	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Paclitaxel disposition in epithelial ovarian cancer	66 European ancestry cases, 14 Asian ancestry cases	NA	3q26.1	BCHE, ZBBX	rs1574560-?	NR	6E-7	(adjusted for dose, GFR & AST)	3.049	unit increase (EA, Australian cohort)	Illumina [610255]	N
1852	chr3	166088810	166088811	rs35400546	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on educational attainment (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q26.1		rs35400546-?	NR	4E-8				NR [NR]	N
1852	chr3	166113594	166113595	rs3978501	33349686	Wendt FR	2020-12-21	Nat Hum Behav	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.	Neuroticism conditioned on average household income before tax (multi-trait conditioning and joint analysis)	170,911 European ancestry individuals	NA	3q26.1		rs3978501-?	NR	4E-8				NR [NR]	N
1852	chr3	166172903	166172904	rs141065579	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	3q26.1		rs141065579-T	NR	2E-8		0.427	[0.28-0.58] unit decrease	Affymetrix [509886] (imputed)	N
1853	chr3	166216302	166216303	rs73161363	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	3q26.1	NR	rs73161363-T	0.04656	5E-7		0.3615	[0.22-0.5] unit increase	Illumina [10677593] (imputed)	N
1853	chr3	166218061	166218062	rs144477852	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3q26.1	NR	rs144477852-T	0.004	4E-9	(Bray-Curtis metric)	5.769103	NR z-score increase	Illumina [5293637] (imputed)	N
1853	chr3	166261887	166261888	rs6788186	32562552	Chua KC	2020-06-20	Clin Pharmacol Ther	Genome-Wide Meta-Analysis Validates a Roless for S1PR1 in Microtubule Targeting Agent-Induced Sensory Peripheral Neuropathy.	Sensory peripheral neuropathy in microtubule targeting agent-treated breast cancer	1,324 European ancestry individuals	NA	3q26.1	ZBBX	rs6788186-?		5E-6		0.282	[NR] unit increase	Illumina [6030476] (imputed)	N
1854	chr3	166419089	166419090	rs115101768	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	3q26.1	Intergenic	rs115101768-G	NR	9E-6		0.0509756	[0.028-0.074] unit increase	Illumina [13519193] (imputed)	N
1855	chr3	166481207	166481208	rs11720469	28070124	Meyers JL	2017-01-10	Mol Psychiatry	An endophenotype approach to the genetics of alcohol dependence: a genome wide association study of fast beta EEG in families of African ancestry.	Fast beta electroencephalogram	2,382 African American individuals	NA	3q26.1	BCHE, PDCD10, WDR49, SERPINI1, SERPINI2, ZBBX	rs11720469-?	NR	5E-9		0.124	NR unit decrease	Illumina [12972748] (imputed)	N
1855	chr3	166492381	166492383	rs35789574	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rubella	12,000 European ancestry cases, 71,597 European ancestry controls	NA	3q26.1	NR	rs35789574-?	NR	9E-6		0.0705	[0.039-0.102] unit increase	Illumina [at least 560000] (imputed)	N
1855	chr3	166537992	166537993	rs77645982	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 negative oropharyngeal cancer	565 European ancestry cases, 5,256 European ancestry controls	NA	3q26.1		rs77645982-T	NR	2E-6		2.96		Illumina [7574753] (imputed)	N
1856	chr3	166633418	166633419	rs138869945	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q26.1	intergenic	rs138869945-A	0.0174198824366869	3E-6	(G_Gemmiger_HB)	1.33187	[0.78-1.89] unit decrease	Illumina [7711310] (imputed)	N
1856	chr3	166651275	166651276	rs73878431	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q26.1		rs73878431-G	NR	4E-7	(GLM)	1.248	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1856	chr3	166673263	166673264	rs6443921	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	3q26.1		rs6443921-C	NR	7E-6	(GLM)	3.3779	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1856	chr3	166701233	166701234	rs9812182	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	SERPINI2	rs9812182-?	NR	3E-6	(inosine)	0.28564447	[0.17-0.41] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1856	chr3	166707275	166707276	rs13324323	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Worry	348,219 European ancestry individuals	NA	3q26.1	NR	rs13324323-T	NR	2E-9		0.01739	[0.012-0.023] unit decrease	Affymetrix [10847151] (imputed)	N
1857	chr3	166728916	166728917	rs147686985	26503584	Litchfield K	2015-10-27	Nat Commun	Identification of four new susceptibility loci for testicular germ cell tumour.	Testicular germ cell tumor	986 European ancestry cases, 4,946 European ancestry controls	4,009 cases, 4,066 controls	3q26.1	NR	rs147686985-C	0.02	3E-6	(EA)	1.8	[1.33-2.44]	Illumina [~ 8900000] (imputed)	N
1857	chr3	166741260	166741261	rs114068300	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs114068300-A	0.01394	4E-9	(TNC)	0.05597	NR unit increase	Illumina [1671387] (imputed)	N
1857	chr3	166741260	166741261	rs114068300	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs114068300-A	0.01394	3E-9	(AOC3)	0.01764	NR unit increase	Illumina [1671387] (imputed)	N
1857	chr3	166742590	166742591	rs9836282	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Human papilloma virus 16 positive oropharyngeal cancer	1,078 European ancestry cases, 5,256 European ancestry controls	NA	3q26.1		rs9836282-C	NR	1E-7		0.7541		Illumina [7574753] (imputed)	N
1857	chr3	166782813	166782814	rs2030352	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.1	SERPINI2	rs2030352-?	NR	7E-6	(hypoxanthine)	0.20140392	[0.11-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1857	chr3	166843068	166843069	rs141554673	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q26.1	NR	rs141554673-?	NR	1E-8				Illumina [7760689] (imputed)	N
1858	chr3	166872018	166872019	rs139904671	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	SM23-33 abundance in stool	5,959 Finnish ancestry individuals	NA	3q26.1		rs139904671-G	0.0174008	5E-8		0.0971948	[0.062-0.132] unit decrease	Illumina [7980478] (imputed)	N
1858	chr3	166978704	166978705	rs6777098	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q26.1		rs6777098-T	NR	8E-6	(GLM)	1.1964	[NR] unit increase	Illumina [~ 9000000] (imputed)	N
1859	chr3	167087947	167087948	rs11719773	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs11719773-G	0.01394	3E-10	(AOC3)	0.01876	NR unit increase	Illumina [1671387] (imputed)	N
1859	chr3	167098972	167098973	rs13064599	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris color (L* coordinate)	329 South Asian ancestry individuals		3q26.1	ZBBX	rs13064599-A	0.0475962	1E-6		0.94491	[0.57-1.32] unit decrease	Illumina [640625] (imputed)	N
1860	chr3	167117844	167117845	rs2419134	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	3q26.1	RP11-576M8.2	rs2419134-C	0.027	5E-6		3.57	[2.06-6.17]	Illumina [7959153] (imputed)	N
1860	chr3	167171278	167171279	rs146751249	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SERPINI2	rs146751249-?	NR	8E-9	(female)	0.588067	[NR] unit increase	Affymetrix [NR] (imputed)	N
1860	chr3	167191651	167191652	rs4129073	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Pork consumption	335,576 European ancestry individuals	NA	3q26.1	SERPINI2, WDR49	rs4129073-?	NR	3E-10		0.00286303	[-0.00209-0.00781] unit decrease	Affymetrix [25921788] (imputed)	N
1860	chr3	167191651	167191652	rs4129073	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Oily fish consumption	335,576 European ancestry individuals	NA	3q26.1	SERPINI2, WDR49	rs4129073-?	NR	3E-10		0.0157783	[0.011-0.021] unit decrease	Affymetrix [25921788] (imputed)	N
1860	chr3	167199680	167199681	rs11706682	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fish- and plant-related diet	154,123 European ancestry men, 181,453 European ancestry women	NA	3q26.1	SERPINI2, WDR49	rs11706682-?	NR	1E-11		0.0172815	[0.012-0.022] unit decrease	Affymetrix [25921788] (imputed)	N
1860	chr3	167218542	167218543	rs2140364	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Fruit consumption	335,576 European ancestry individuals	NA	3q26.1	SERPINI2, WDR49	rs2140364-?	NR	1E-8		0.0142654	[0.0093-0.0192] unit decrease	Affymetrix [25921788] (imputed)	N
1861	chr3	167283841	167283842	rs55853354	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q26.1	WDR49	rs55853354-A	0.674226	3E-8	(-476 ms)	0.0347417	[0.023-0.047] unit increase	Affymetrix [10000000] (imputed)	N
1861	chr3	167304188	167304189	rs7613933	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	3q26.1	NR	rs7613933-G	0.507	7E-7		1.0792842	[NR]	NR [9372253] (imputed)	N
1861	chr3	167348837	167348838	rs7627289	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral fat	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q26.1	WDR49	rs7627289-A	0.22	2E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
1861	chr3	167349003	167349004	rs6444447	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.1	NR	rs6444447-C	0.739146	2E-66				Affymetrix, Illumina [17210439] (imputed)	N
1861	chr3	167364270	167364271	rs17408282	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	3q26.1		rs17408282-?	NR	8E-9				Illumina [1128286]	N
1861	chr3	167372726	167372727	rs6444471	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q26.1	WDR49	rs6444471-T	0.262527	8E-55		0.03939996	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
1861	chr3	167373857	167373858	rs6807306	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	3q26.1	WDR49	rs6807306-G	0.2614	6E-19		0.0364898	[0.028-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1862	chr3	167390456	167390457	rs9845741	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.1	NR	rs9845741-A	0.20863	1E-19				Affymetrix, Illumina [24588908] (imputed)	N
1862	chr3	167413167	167413168	rs3804610	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q26.1	NR	rs3804610-C	0.2583	2E-20		0.019295	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1862	chr3	167418272	167418273	rs56875499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q26.1		rs56875499-G	NR	5E-12		0.0182	[0.013-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1862	chr3	167431515	167431516	rs6795978	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q26.1	NR	rs6795978-T	0.741945	1E-67		0.037785	[0.034-0.042] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1862	chr3	167439396	167439397	rs6444571	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q26.1	PDCD10	rs6444571-C	0.258927	1E-17		0.02184175	[0.017-0.027] unit increase	Affymetrix [93095623] (imputed)	N
1862	chr3	167480660	167480661	rs9819158	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Skin, hair and eye pigmentation (multivariate analysis)	6,236 Latin American individuals	NA	3q26.1	SERPINI1	rs9819158-?	NR	2E-8				Illumina [181139] (imputed)	N
1862	chr3	167480660	167480661	rs9819158	30664655	Adhikari K	2019-01-21	Nat Commun	A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.	Eye color (saturation)	6,236 Latin American individuals	NA	3q26.1	SERPINI1	rs9819158-?	NR	9E-6				Illumina [8896142] (imputed)	N
1862	chr3	167508061	167508062	rs13090836	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	Heart rate	455 African American individuals	NA	3q26.1	SERPINI1	rs13090836-T		7E-6		3.58	[NR] ms increase	Illumina [> 930000]	N
1863	chr3	167555298	167555299	rs68146006	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q26.1	SERPINI1	rs68146006-A	0.303	1E-6		0.0469	[0.028-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1863	chr3	167566282	167566283	rs9882204	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (all NPDR and PDR)	1,079 European ancestry cases, 1,970 European ancestry controls, 911 African American cases, 941 African American controls	7,178 East Asian ancestry cases, 6,525 East Asian ancestry controls, 214 South East Asian ancestry cases, 557 South East Asian ancestry controls, 315 South Asian ancestry cases, 669 South Asian ancestry controls, 8,205 European ancestry cases, 7,713 European ancestry controls, 1,470 Hispanic cases, 1,240 Hispanic controls	3q26.1	NR	rs9882204-?	NR	2E-6	(AA, adjusted for duration of diabetes and glycemic control)	1.32	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1863	chr3	167586203	167586204	rs79609101	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.1	NR	rs79609101-T	0.02091	2E-8	(ORM2)	0.1241	NR unit increase	Illumina [1671387] (imputed)	N
1863	chr3	167604118	167604119	rs6763376	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	3q26.1	NR	rs6763376-?	NR	4E-6	(AA)	1.57	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1864	chr3	167661135	167661136	rs12639288	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	3q26.2	LOC100509398	rs12639288-?	NR	5E-6	(Conditioned on rs2435357, rs1800860, rs7078220 and rs16879552)			Illumina [757260]	N
1864	chr3	167670594	167670595	rs145242450	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q26.2	NR	rs145242450-?	NR	1E-7	(Latino)	1.6001	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1864	chr3	167725348	167725349	rs7632500	24121790	Levine DM	2013-10-13	Nat Genet	A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.	Digestive system disease (Barrett's esophagus and esophageal adenocarcinoma combined)	3,928 European ancestry cases, 3,207 European ancestry controls	1,636 European ancestry cases, 6,911 European ancestry controls	3q26.2	NR	rs7632500-C	0.038	1E-6		1.37	[1.21-1.55]	Illumina [922031]	N
1864	chr3	167747021	167747022	rs61743591	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.2		rs61743591-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1864	chr3	167748055	167748056	rs6444790	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q26.2	Intergenic	rs6444790-T	0.4555	2E-8	(MTAG)	0.01	[0.0065-0.0135] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1864	chr3	167748896	167748897	rs4955783	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid t-tau levels in Alzheimer's disease dementia	190 European ancestry cases	NA	3q26.2	GOLIM4, MEMO1P3, EGFEM1P	rs4955783-G	0.49	5E-7		0.61	[0.39-0.83] unit decrease	Illumina [8340470] (imputed)	N
1864	chr3	167749514	167749515	rs9845075	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q26.2	Intergenic	rs9845075-G	0.5504	4E-9		0.0115	[0.0076-0.0154] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1865	chr3	167775590	167775591	rs7653022	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	3q26.2	GOLIM4	rs7653022-?	NR	7E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
1865	chr3	167796156	167796157	rs3915468	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.2	SERPINI1	rs3915468-?	NR	7E-6	(thiamine)	0.1905474	[0.11-0.27] unit increase	Affymetrix [at least 2500000] (imputed)	N
1865	chr3	167811193	167811194	rs183114323	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		GOLIM4	rs183114323-?	NR	1E-9	(female)	0.702158	[NR] unit increase	Affymetrix [NR] (imputed)	N
1865	chr3	167837747	167837748	rs4345115	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	3q26.2	GOLIM4, SERPINI1	rs4345115-T	0.63	7E-6		4.4	[2.44-6.36] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
1865	chr3	167861407	167861408	rs111577701	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	3q26.2	GOLIM4	rs111577701-C	0.91	4E-7	(All epilepsy)	1.16	[1.09-1.24]	Affymetrix, Illumina [NR] (imputed)	N
1865	chr3	167873352	167873353	rs146233927	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Alcohol consumption x experiences in childhood (felt loved by family member) interaction	41,648 European ancestry individuals	NA	3q26.2		rs146233927-?	NR	5E-8		1.5979	[1.02-2.17] unit decrease	Affymetrix [NR] (imputed)	N
1865	chr3	167876204	167876205	rs115523882	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	3q26.2	NR	rs115523882-?	NR	9E-9	(AA)	3.1	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1865	chr3	167890185	167890186	rs200295620	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs no DR)	398 European ancestry cases, 1,970 European ancestry controls, 1,097 African American cases, 941 African American controls	1,354 East Asian ancestry cases, 1130 East Asian ancestry controls, 801 European ancestry cases, 2,880 European ancestry controls, 232 Hispanic cases, 1,048 Hispanic controls	3q26.2	NR	rs200295620-?	NR	7E-8	(AA, adjusted for duration of diabetes and glycemic control)	1.39	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1865	chr3	167890185	167890186	rs200295620	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Diabetic retinopathy (moderate NPDR and PDR)	644 European ancestry cases, 1,970 European ancestry controls, 768 African American cases, 941 African American controls	2,388 East Asian ancestry cases, 6,219 East Asian ancestry controls, 1,658 European ancestry cases, 3,019 European ancestry controls, 1,014 Hispanic cases, 1,240 Hispanic controls	3q26.2	NR	rs200295620-?	NR	1E-6	(AA, adjusted for duration of diabetes and glycemic control)	2.42	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1865	chr3	167897348	167897349	rs2593421	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q26.2		rs2593421-A	NR	3E-10		0.0087	[0.006-0.0114] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1865	chr3	167897820	167897821	rs2686586	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	3q26.2	GOLIM4	rs2686586-T	0.47	6E-8	(AA-triglyceride response)	18.93	[11.89-25.97] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
1867	chr3	168074911	168074912	rs16852193	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	3q26.2	EGFEM1P	rs16852193-T	0.09	7E-6	(EA)	0.0061	[0.0034-0.0088] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1868	chr3	168165799	168165800	rs80075144	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		EGFEM1P	rs80075144-?	NR	3E-9	(female)	0.605842	[NR] unit increase	Affymetrix [NR] (imputed)	N
1868	chr3	168212343	168212344	rs1025217	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.2		rs1025217-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1868	chr3	168218840	168218841	rs7629630	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q26.2	EGFEM1P	rs7629630-A	0.8567	3E-8		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1868	chr3	168225054	168225055	rs1449348	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q26.2	NR	rs1449348-C	0.8585	7E-12		0.0448	[0.032-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1868	chr3	168226051	168226052	rs13099581	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q26.2	NR	rs13099581-C	0.8192	1E-10		0.0371	[0.026-0.048] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1868	chr3	168228134	168228135	rs2555502	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.2	NR	rs2555502-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
1868	chr3	168252303	168252304	rs6782264	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q26.2	NR	rs6782264-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
1869	chr3	168334385	168334386	rs6768297	28843169	Neumann A	2017-08-12	Psychoneuroendocrinology	The low single nucleotide polymorphism heritability of plasma and saliva cortisol levels.	Cortisol levels (saliva)	7,703 European ancestry individuals	NA	3q26.2	EVI1	rs6768297-A	0.94	2E-7		0.34	[0.22-0.46] unit decrease	Illumina, Perlegen [2156702] (imputed)	N
1869	chr3	168351247	168351248	rs76289741	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q26.2		rs76289741-A	NR	8E-6	(GLM)	5.1717	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1870	chr3	168465343	168465344	rs115449435	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	3q26.2		rs115449435-T	NR	7E-6	(GLM)	6.1478	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
1871	chr3	168631224	168631225	rs6803137	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q26.2	LOC100507661	rs6803137-A	0.776361	5E-11		0.0148815	[0.01-0.019] unit increase	NR [13737936] (imputed)	N
1871	chr3	168631224	168631225	rs6803137	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q26.2		rs6803137-?	NR	2E-17		0.0203471	[0.015-0.025] unit increase	Affymetrix [20259828] (imputed)	N
1871	chr3	168648038	168648039	rs2201862	25849990	Tapper W	2015-04-07	Nat Commun	Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms.	Myeloproliferative neoplasms	524 European ancestry JAK2 negative cases, 2,674 European ancestry controls	1,383 European ancestry JAK2 negative cases, 4,609 European ancestry controls, 526 JAK2 negative cases, 5,506 controls	3q26.2	EGFEM1P, MECOM	rs2201862-C	0.52	2E-9		1.22	[1.14-1.30]	Affymetrix [2098039] (imputed)	N
1871	chr3	168649554	168649555	rs112484600	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q26.2		rs112484600-?	NR	5E-35				NR [~ 8900000] (imputed)	N
1871	chr3	168686675	168686676	rs16852912	21782286	Walter S	2011-07-20	Neurobiol Aging	A genome-wide association study of aging.	Aging (time to event)	16,995 European ancestry individuals	NA	3q26.2	MECOM	rs16852912-T	0.08	3E-6		1.18	[NR]	Affymetrix, Illumina [~ 2500000] (imputed)	N
1872	chr3	168692351	168692352	rs9290351	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q26.2	LOC100507661	rs9290351-G	0.879148	8E-13		0.0206655	[0.015-0.026] unit decrease	NR [13737936] (imputed)	N
1872	chr3	168692351	168692352	rs9290351	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q26.2		rs9290351-?	NR	7E-14				NR [~ 8900000] (imputed)	N
1872	chr3	168692351	168692352	rs9290351	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q26.2		rs9290351-?	NR	7E-16		0.0250314	[0.019-0.031] unit decrease	Affymetrix [20259828] (imputed)	N
1872	chr3	168698188	168698189	rs6802894	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3q26.2	RP11-152C17.1	rs6802894-G	0.414885	2E-8		0.051398147	[0.033-0.069] unit increase	Affymetrix [7288503] (imputed)	N
1872	chr3	168707389	168707390	rs7630814	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.2		rs7630814-?	NR	3E-16				NR [~ 8900000] (imputed)	N
1872	chr3	168709842	168709843	rs879394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3q26.2	LOC100507661	rs879394-T	0.2348	2E-24		0.0305	[0.025-0.036] unit decrease	Affymetrix [19819130] (imputed)	N
1872	chr3	168709842	168709843	rs879394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	LOC100507661	rs879394-T	0.2348	2E-9		0.0166	[0.011-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
1872	chr3	168709842	168709843	rs879394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	LOC100507661	rs879394-T	0.2348	5E-26		0.0298	[0.024-0.035] unit decrease	Affymetrix [19819130] (imputed)	N
1872	chr3	168709842	168709843	rs879394	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	LOC100507661	rs879394-T	0.2348	1E-25		0.0289	[0.023-0.034] unit decrease	Affymetrix [19819130] (imputed)	N
1872	chr3	168709842	168709843	rs879394	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q26.2		rs879394-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1872	chr3	168715807	168715808	rs56341938	28166213	Wain LV	2017-02-06	Nat Genet	Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets.	Lung function (FEV1/FVC)	48,943 European ancestry individuals	57,176 European ancestry individuals, 38,199 individuals.	3q26.2	LOC100507661, MECOM	rs56341938-?	0.51	6E-14		0.029	[0.021-0.037] unit increase	Affymetrix [27624732] (imputed)	N
1872	chr3	168718096	168718097	rs1420466	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	3q26.2	NR	rs1420466-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1872	chr3	168718096	168718097	rs1420466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q26.2		rs1420466-?	NR	3E-9				NR [~ 8900000] (imputed)	N
1872	chr3	168729440	168729441	rs13064267	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.2	Intergenic	rs13064267-A	0.7971	7E-12	(MTAG)	0.0112	[0.0081-0.0143] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1872	chr3	168740424	168740425	rs13099165	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.2		rs13099165-T	0.2029	1E-11		0.0118	[0.0085-0.0151] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1872	chr3	168741643	168741644	rs1397899	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.2	LOC100507661, MECOM	rs1397899-?	NR	1E-9		0.018139593	[0.012-0.024] unit decrease	Illumina [27896057] (imputed)	N
1872	chr3	168746144	168746145	rs7642001	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3q26.2	MECOM	rs7642001-A	0.37	1E-14		1.08	[1.06-1.10]	Affymetrix, Illumina [6224355] (imputed)	N
1872	chr3	168746516	168746516	rs5854303	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q26.2	RP11-152C17.1	rs5854303-AG	NR	3E-8		0.0176484	[0.011-0.024] unit increase	Affymetrix [321114] (imputed)	N
1872	chr3	168760149	168760150	rs13069567	29603369	Naito T	2018-03-30	J Gastroenterol Hepatol	Clinical and genetic risk factors for decreased bone mineral density in Japanese patients with inflammatory bowel disease.	Bone mineral density (lumbar spine) in inflammatory bowel disease	254 Japanese ancestry cases	NA	3q26.2	MECOM	rs13069567-T	NR	6E-7		0.49	[NR] unit increase	Affymetrix [4384682] (imputed)	N
1872	chr3	168761422	168761423	rs75316749	27197191	Fehringer G	2016-04-20	Cancer Res	Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.	Cancer	5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases,  61,820 European ancestry controls	NA	3q26.2	Intergenic	rs75316749-G	NR	2E-7		1.1	[NR]	Affymetrix, Illumina [9916564] (imputed)	N
1872	chr3	168776030	168776031	rs13320959	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.2		rs13320959-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x ever smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	1E-13			[NR]	Affymetrix [9886854] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (main effect)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	3E-8		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease x current smoker interaction (2df)	21,077 European ancestry cases, 179,689 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	2E-15			[NR]	Affymetrix [9886854] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in non-current smokers	16,488 European ancestry cases, 169,688 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	3E-8		1.07	[1.04-1.1]	Affymetrix [9886854] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in ever smokers	12,446 European ancestry cases, 59,145 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	3E-11		1.1	[1.07-1.14]	Affymetrix [9886854] (imputed)	N
1872	chr3	168776325	168776326	rs1420472	33106845	Kim W	2020-10-27	Am J Epidemiol	Genome-wide Gene-by-smoking Interaction Study of Chronic Obstructive Pulmonary Disease.	Chronic obstructive pulmonary disease in current smokers	4,589 European ancestry cases, 10,001 European ancestry controls	NA	3q26.2	NR	rs1420472-T	0.45	3E-10		1.2	[1.13-1.26]	Affymetrix [9886854] (imputed)	N
1872	chr3	168788691	168788692	rs1479404	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q26.2	NR	rs1479404-T	0.55	5E-8		0.00993	[0.0063-0.0136] unit increase	NR [NR]	N
1872	chr3	168789704	168789705	rs6806825	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q26.2		rs6806825-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1872	chr3	168811234	168811235	rs975970	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q26.2	NR	rs975970-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1872	chr3	168820426	168820427	rs2111082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q26.2	MECOM	rs2111082-A	0.100215	2E-19		0.033316918	[0.026-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1872	chr3	168820426	168820427	rs2111082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs2111082-G	0.898663	2E-22				Affymetrix, Illumina [17210439] (imputed)	N
1872	chr3	168820426	168820427	rs2111082	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q26.2	NR	rs2111082-G	0.90024	5E-25		0.03282	[0.027-0.039] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1873	chr3	168828278	168828279	rs13078774	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs13078774-C	0.495661	3E-39				Affymetrix, Illumina [24588908] (imputed)	N
1873	chr3	168832106	168832107	rs9847631	33057200	Bao EL	2020-10-14	Nature	Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.	Myeloproliferative neoplasms	1,086 British ancestry cases, 407,155 British ancestry controls, 640 Finnish ancestry cases, 176,259 Finnish ancestry controls	NA	3q26.2	MECOM	rs9847631-T	0.3979	7E-9		1.17	1.11-1.23	Affymetrix [6845584] (imputed)	N
1873	chr3	168832834	168832835	rs16853173	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3q26.2	MECOM	rs16853173-T	0.08	1E-13	(AA, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1873	chr3	168845417	168845418	rs2901381	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q26.2	MECOM	rs2901381-G	0.606	5E-24		0.03793656	[0.031-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1873	chr3	168846700	168846701	rs12491785	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma and/or waist-to-hip ratio adjusted for BMI	28,862 European ancestry cases, 422,048 European ancestry controls, 6,780 European ancestry individuals	NA	3q26.2	NR	rs12491785-C	NR	1E-12				Affymetrix [~ 8270000] (imputed)	N
1873	chr3	168846700	168846701	rs12491785	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q26.2	MECOM	rs12491785-T	0.6073	4E-15		0.02939993	[0.022-0.037] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1873	chr3	168850193	168850194	rs9811922	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	3q26.2		rs9811922-G	NR	4E-13		0.0647	[0.047-0.082] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1873	chr3	168853334	168853335	rs77463690	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3q26.2	MECOM	rs77463690-G	0.0722319	2E-9		0.0699271	[0.047-0.093] unit decrease	Affymetrix [7288503] (imputed)	N
1873	chr3	168854207	168854208	rs3980919	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	3q26.2		rs3980919-G	0.39984	5E-10		0.0214748	[0.015-0.028] unit decrease	Illumina [13478928] (imputed)	N
1873	chr3	168857632	168857633	rs78307470	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q26.2		rs78307470-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1873	chr3	168858471	168858472	rs34992808	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q26.2	MECOM	rs34992808-G	0.890111	3E-10		0.022885121	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1873	chr3	168860009	168860010	rs2859868	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q26.2		rs2859868-A	NR	5E-25		0.0209	[0.017-0.025] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1873	chr3	168860009	168860010	rs2859868	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q26.2		rs2859868-G	0.45	3E-13				Affymetrix [10369434] (imputed)	N
1873	chr3	168860009	168860010	rs2859868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.2	MECOM	rs2859868-A	0.549509	3E-29		0.026535966	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
1873	chr3	168860009	168860010	rs2859868	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q26.2	MECOM	rs2859868-A	0.549488	2E-16		0.01905833	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1873	chr3	168860009	168860010	rs2859868	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q26.2	NR	rs2859868-A	0.549353	9E-38		0.02372	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1873	chr3	168861067	168861068	rs6778131	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	Intrinsic epigenetic age acceleration	34,461 European ancestry individuals, 6,148 African American individuals	NA	3q26.2	NR	rs6778131-?	NR	2E-8				Affymetrix, Illumina [6211246] (imputed)	N
1873	chr3	168864549	168864550	rs1420476	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q26.2	MECOM	rs1420476-A	0.9564511	4E-14		0.04156233	[0.031-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1873	chr3	168864642	168864643	rs7633965	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q26.2	MECOM	rs7633965-A	0.070365	3E-11		0.02880574	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
1873	chr3	168864642	168864643	rs7633965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs7633965-C	0.891708	7E-10				Affymetrix, Illumina [23467995] (imputed)	N
1873	chr3	168864642	168864643	rs7633965	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q26.2	NR	rs7633965-C	0.929301	8E-12		0.025005	[0.018-0.032] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1873	chr3	168866538	168866539	rs73167972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.2	MECOM	rs73167972-G	0.076117	2E-31		0.051870856	[0.043-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1873	chr3	168878673	168878674	rs9819362	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q26.2	NR	rs9819362-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
1873	chr3	168882416	168882417	rs13094407	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q26.2	NR	rs13094407-G	0.1477	1E-8				NR [9056863] (imputed)	N
1873	chr3	168885027	168885028	rs9809961	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	3q26.2	MECOM	rs9809961-?	NR	8E-8	(Hematocrit)	0.4	[0.26-0.54] unit decrease	Illumina [14948665] (imputed)	N
1873	chr3	168885027	168885028	rs9809961	30576415	Gilly A	2019-08-01	Bioinformatics	Very low-depth whole-genome sequencing in complex trait association studies.	Hematology traits	1,225 Mylopotamos (founder/genetic isolate) individuals	NA	3q26.2	MECOM	rs9809961-?	NR	5E-7	(Hemoglobin)	0.37	[0.23-0.51] unit decrease	Illumina [14948665] (imputed)	N
1873	chr3	168888111	168888112	rs76272256	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q26.2	MECOM	rs76272256-T	0.2426	2E-11		0.0024	[0.0016-0.0032] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
1873	chr3	168888111	168888112	rs76272256	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q26.2	MECOM	rs76272256-T	0.2426	1E-7		0.0044	[0.0028-0.006] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
1873	chr3	168910272	168910273	rs9290361	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q26.2	MECOM	rs9290361-A	0.0903	1E-22		0.06246271	[0.05-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1873	chr3	168911332	168911333	rs9866086	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q26.2	MECOM	rs9866086-C	0.090324	8E-13		0.028636301	[0.021-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1873	chr3	168916239	168916240	rs9864370	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (hyperdiploidy)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q26.2	NR	rs9864370-G	0.05	9E-6	(HD vs. non-HD)	2.04	[1.49-2.80]	Illumina [414804]	N
1873	chr3	168930423	168930424	rs1711079	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.2	NR	rs1711079-?	NR	8E-6		0.0077687	[0.0044-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
1873	chr3	168930865	168930866	rs11314719	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Phoneme awareness	3,093 European ancestry individuals	NA	3q26.2	MECOM	rs11314719-TA	0.766251429	4E-6		0.15875	[0.091-0.226] unit increase	Illumina [6969139] (imputed)	N
1873	chr3	168949383	168949384	rs12494190	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q26.2	NR	rs12494190-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1873	chr3	168949383	168949384	rs12494190	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q26.2	NA	rs12494190-A	0.4038	3E-11		0.0121	[0.0086-0.0156] unit decrease	NR [~ 27400000] (imputed)	N
1874	chr3	168952814	168952815	rs191494905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q26.2		rs191494905-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1874	chr3	168971230	168971231	rs784288	23349225	Hwang JY	2013-01-24	J Med Genet	Meta-analysis identifies a MECOM gene as a novel predisposing factor of osteoporotic fracture.	Osteoporosis	288 Korean ancestry cases, 1,139 Korean ancestry controls	831 East Asian ancestry cases, 2305 East Asian ancestry controls	3q26.2	MECOM	rs784288-A	0.23	4E-8		1.39	[1.24-1.56]	Affymetrix [1573409] (imputed)	N
1874	chr3	168972801	168972802	rs998749	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q26.2		rs998749-?	NR	1E-13				NR [~ 8900000] (imputed)	N
1874	chr3	168972801	168972802	rs998749	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q26.2	NR	rs998749-A	0.49	3E-14		0.013	[0.0095-0.0165] unit increase	Affymetrix [2446094] (imputed)	N
1874	chr3	168972801	168972802	rs998749	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q26.2	NR	rs998749-A	0.49	5E-8				Affymetrix [2446094] (imputed)	N
1874	chr3	168975394	168975395	rs12633242	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q26.2		rs12633242-A	0.12	1E-8		5.71	z score increase	Affymetrix [9061022] (imputed)	N
1874	chr3	168975394	168975395	rs12633242	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q26.2	NR	rs12633242-A	0.1478	4E-8				NR [9056863] (imputed)	N
1874	chr3	168983984	168983985	rs987254	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3q26.2		rs987254-?	NR	8E-6	(lmp)	1.83		Illumina [11595112] (imputed)	N
1874	chr3	168990833	168990834	rs115798104	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3q26.2	MECOM	rs115798104-A	0.997	9E-7	(liability model)	0.8	[0.49-1.11] unit decrease	NR [19725427] (imputed)	N
1874	chr3	169029978	169029979	rs12634933	25189868	Sung YJ	2014-09-03	Am J Hypertens	Gene-smoking interactions identify several novel blood pressure loci in the Framingham Heart Study.	Blood pressure (smoking interaction)	Up to 6,889 individuals	NA	3q26.2	MECOM	rs12634933-?	NR	7E-8	(SBP,Pack-years)			Affymetrix [2485435] (imputed)	N
1874	chr3	169034632	169034633	rs185254549	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Weight	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q26.2	MECOM	rs185254549-A	0.012	1E-7	(East Asian)	2.05	[0.89-3.21] unit increase	Illumina [up to 13042663] (imputed)	N
1874	chr3	169046536	169046537	rs75193859	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q26.2		rs75193859-A	0.083859	8E-14		0.0272295	[0.02-0.034] unit increase	Illumina [13479295] (imputed)	N
1874	chr3	169046536	169046537	rs75193859	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.2	MECOM	rs75193859-?	NR	6E-15		0.040132944	[0.03-0.05] unit increase	Illumina [27896057] (imputed)	N
1874	chr3	169080184	169080185	rs9883650	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs9883650-G	NR	3E-10		0.0273	[0.019-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
1874	chr3	169080184	169080185	rs9883650	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IL-1beta)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3q26.2	MDS1	rs9883650-C		4E-7	(EA)			Illumina [NR]	N
1874	chr3	169081583	169081584	rs7617754	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q26.2	MECOM	rs7617754-A	0.250609	1E-10		0.016498944	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1874	chr3	169082632	169082633	rs6774494	26545403	Bei JX	2016-01-01	Cancer Epidemiol Biomarkers Prev	A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry.	Nasopharyngeal carcinoma	2,152 Chinese ancestry cases, 3,740 Chinese ancestry controls	4,716 Chinese ancestry cases, 5,379 Chinese ancestry controls	3q26.2	MECOM	rs6774494-?	NR	2E-12		1.1904762		Illumina [Sequenom custom array used in replication] (imputed)	N
1874	chr3	169082632	169082633	rs6774494	20512145	Bei JX	2010-05-30	Nat Genet	A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci.	Nasopharyngeal carcinoma	1,583 Chinese ancestry cases, 1,894 Chinese ancestry controls	3,507 Chinese ancestry cases, 3,063 Chinese ancestry controls, 284  Chinese ancestry trios	3q26.2	MDS1, EVI1	rs6774494-?	0.35	1E-8		1.19	[1.12-1.27]	Illumina [464328]	N
1875	chr3	169090125	169090126	rs1290788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs1290788-G	NR	2E-12		0.0193	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1875	chr3	169090125	169090126	rs1290788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q26.2	NR	rs1290788-G	NR	1E-12		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
1875	chr3	169090125	169090126	rs1290788	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Diastolic blood pressure	2,732 Kuwaiti ancestry individuals	NA	3q26.2	MECOM	rs1290788-?	NR	3E-7		5.1	NR unit decrease	Illumina [up to 1520000] (imputed)	N
1875	chr3	169091252	169091253	rs1273886	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q26.2	NR	rs1273886-G	0.404685	8E-10		0.012533	[0.0085-0.0165] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
1875	chr3	169091568	169091569	rs1290790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.2		rs1290790-?	NR	1E-27				NR [~ 8900000] (imputed)	N
1875	chr3	169091568	169091569	rs1290790	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q26.2		rs1290790-?	NR	2E-20				NR [~ 8900000] (imputed)	N
1875	chr3	169091583	169091584	rs1290791	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q26.2	NR	rs1290791-A	0.74	3E-17		0.0175	[0.013-0.022] unit increase	NR [NR]	N
1875	chr3	169092037	169092038	rs76273615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q26.2		rs76273615-G	NR	4E-47		0.0391	[0.034-0.044] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1875	chr3	169092037	169092038	rs76273615	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	3q26.2		rs76273615-G	0.195702	1E-27		0.0468344	[0.038-0.055] unit increase	Illumina [13478792] (imputed)	N
1875	chr3	169092037	169092038	rs76273615	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	3q26.2	MECOM	rs76273615-?	NR	2E-26		0.04904	[0.04-0.058] unit increase novel	Illumina [6108953] (imputed)	N
1875	chr3	169093099	169093100	rs142436749	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q26.2	MECOM	rs142436749-G	0.01	5E-9		1.25	[1.16-1.34]	Illumina [20370935] (imputed)	N
1875	chr3	169094762	169094763	rs1273884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q26.2	MECOM	rs1273884-A	0.438423	7E-26		0.023397999	[0.019-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs1290784-T	0.386491	5E-19				Affymetrix, Illumina [24653286] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q26.2	NR	rs1290784-T	0.447814	7E-22		0.018023	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q26.2	NR	rs1290784-T	0.44778	2E-31		0.0216	[0.018-0.025] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q26.2	NR	rs1290784-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption interaction (2df test)	63,608 European ancestry drinkers, 10,193 African American or Afro-Caribbean heavy drinkers,  2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,494 European ancestry non-drinkers, 11,224 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,002 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,452 Hispanic drinkers, 43,316 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,945 Asian ancestry non-drinkers, 6,925 Hispanic non-drinkers	3q26.2	MECOM	rs1290784-T	0.46	3E-22	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs1290784-T	0.45	5E-12	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs1290784-T	0.45	5E-13	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169096899	169096900	rs1290784	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs1290784-T	0.38	2E-11	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169097380	169097381	rs1290786	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	3q26.2		rs1290786-T	NR	9E-12		0.0458	[0.033-0.059] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1875	chr3	169097380	169097381	rs1290786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q26.2	NR	rs1290786-T	0.431488	2E-32		0.022089	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1875	chr3	169097380	169097381	rs1290786	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs1290786-T	0.372951	2E-29				Affymetrix, Illumina [24558453] (imputed)	N
1875	chr3	169097380	169097381	rs1290786	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	3q26.2	MECOM	rs1290786-T	0.429711	3E-10		0.03831087	[0.026-0.05] unit increase	Affymetrix [7288503] (imputed)	N
1875	chr3	169097380	169097381	rs1290786	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption (light vs heavy) interaction (2df test)	56,705 European ancestry heavy and light drinkers, 9,725 African American or Afro-Caribbean heavy and light drinkers, 1,789 Asian ancestry heavy and light drinkers, 4,812 Hispanic or Latin American heavy and light drinkers	42,077 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,701 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs1290786-T	0.36	4E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169098190	169098190	rs10667759	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q26.2		rs10667759-GTA	NR	3E-14		0.0161	[0.012-0.02] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
1875	chr3	169098790	169098791	rs988397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q26.2	MECOM	rs988397-T	0.438216	1E-17		0.019050693	[0.015-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1875	chr3	169098790	169098791	rs988397	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q26.2	MECOM	rs988397-T	0.438205	9E-23		0.021898163	[0.018-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1875	chr3	169098790	169098791	rs988397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs988397-T	0.377789	7E-31				Affymetrix, Illumina [24332387] (imputed)	N
1875	chr3	169098790	169098791	rs988397	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3q26.2	MECOM	rs988397-T	0.45	4E-26	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169098790	169098791	rs988397	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,079 European ancestry heavy drinkers, 217 African American or Afro-Caribbean heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic ancestry heavy drinkers, 74,757 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs988397-T	0.45	2E-11	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169098860	169098861	rs988398	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3q26.2	MECOM	rs988398-T	0.36	8E-12	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169098860	169098861	rs988398	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Diastolic blood pressure x alcohol consumption interaction (2df test)	63,607 European ancestry drinkers, 10,193 African American or Afro-Caribbean drinkers, 2,441 Asian ancestry drinkers, 5,084 Hispanic or Latin American drinkers, 27,492 European ancestry non-drinkers, 11,223 African American or Afro-Caribbean non-drinkers, 9,924 Asian ancestry non-drinkers, 3,387 Hispanic or Latin American non-drinkers	238,058 European ancestry drinkers, 2,280 African American drinkers, 54,081 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,318 European ancestry non-drinkers, 2,761 African American non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3q26.2	MECOM	rs988398-T	0.36	9E-27	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169100346	169100346	rs67112032	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q26.2		rs67112032-ATG	NR	5E-12		0.0131	[0.0094-0.0168] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
1875	chr3	169100442	169100443	rs223103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs223103-G	0.473229	8E-10				Affymetrix, Illumina [22063850] (imputed)	N
1875	chr3	169100442	169100443	rs223103	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q26.2	NR	rs223103-G	0.473715	4E-12		0.013048	[0.0094-0.0167] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1875	chr3	169100885	169100886	rs419076	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q26.2		rs419076-C	NR	5E-15		0.016	[0.012-0.02] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1875	chr3	169100885	169100886	rs419076	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Systolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	3q26.2	MECOM	rs419076-?	NR	4E-22				Affymetrix, Illumina [18800000] (imputed)	N
1875	chr3	169100885	169100886	rs419076	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure (cigarette smoking interaction)	80,552 European ancestry individuals, 27,118 African individuals, 13,438 Asian individuals, 8,805 Hispanic individuals	305,513 European ancestry individuals, 7,786 African individuals, 148,932 Asian individuals, 13,533 Hispanic individuals, 4,414 Brazilian individuals	3q26.2	MECOM	rs419076-?		2E-24				Affymetrix, Illumina [18800000] (imputed)	N
1875	chr3	169100885	169100886	rs419076	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Systolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3q26.2	MECOM	rs419076-C	0.527	2E-11	(EA, initial)	0.476	[0.34-0.62] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1875	chr3	169100885	169100886	rs419076	28739976	Wain LV	2017-07-24	Hypertension	Novel Blood Pressure Locus and Gene Discovery Using Genome-Wide Association Study and Expression Data Sets From Blood and the Kidney.	Diastolic blood pressure	150,134 European ancestry individuals	87,359 European ancestry individuals, 140,886 European and unknown ancestry individuals	3q26.2	MECOM	rs419076-C	0.527	3E-12	(EA, initial)	0.302	[0.22-0.39] unit decrease	Affymetrix, Illumina, Perlegen [7994604] (imputed)	N
1875	chr3	169100885	169100886	rs419076	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q26.2	MECOM	rs419076-T		5E-13		0.275	unit increase	Affymetrix [at least 2696785] (imputed)	N
1875	chr3	169100885	169100886	rs419076	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q26.2	MECOM	rs419076-T		6E-19		0.207	unit increase	Affymetrix [at least 2696785] (imputed)	N
1875	chr3	169100885	169100886	rs419076	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Systolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3q26.2	MECOM	rs419076-T	0.47	2E-13		0.409	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1875	chr3	169100885	169100886	rs419076	21909115	Ehret GB	2011-09-11	Nature	Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk.	Diastolic blood pressure	69,395 European ancestry individuals	Up to 133,361 European ancestry individuals	3q26.2	MECOM	rs419076-T	0.47	2E-12		0.241	[NR] mmHg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1875	chr3	169100885	169100886	rs419076	21909110	Wain LV	2011-09-11	Nat Genet	Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.	Blood pressure	74,064 European ancestry individuals	48,607 European ancestry individuals	3q26.2	MECOM	rs419076-T	0.44	8E-13	(Mean Arterial Pressure)	0.34	[0.25-0.43] mmHg increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1875	chr3	169100898	169100899	rs448378	27618448	Liu C	2016-10-01	Nat Genet	Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.	Mean arterial pressure	120,473 European ancestry individuals, 21,503 African American individuals, 4,586 Hispanic individuals	NA	3q26.2	MECOM	rs448378-G	0.482453586961521	3E-19		0.40844464	[0.32-0.5] unit increase	Illumina [247039]	N
1875	chr3	169100898	169100899	rs448378	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Systolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q26.2	MECOM	rs448378-A	0.5261	8E-9		0.0196	unit decrease	Illumina [242296]	N
1875	chr3	169100898	169100899	rs448378	20700443	Meyer TE	2010-08-05	PLoS Genet	Genome-wide association studies of serum magnesium, potassium, and sodium concentrations identify six Loci influencing serum magnesium levels.	Magnesium levels	15,366 European ancestry individuals	8,463 European ancestry individuals	3q26.2	MDS1	rs448378-G	0.47	1E-8		0.0	[0.002-0.006] mmol/L decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1875	chr3	169100898	169100899	rs448378	19430479	Levy D	2009-05-10	Nat Genet	Genome-wide association study of blood pressure and hypertension.	Systolic blood pressure	29,136 European ancestry individuals	34,433 European ancestry individuals	3q26.2	MDS1	rs448378-A	0.52	1E-7		0.51	[0.31-0.71] mm Hg decrease	Affymetrix, Illumina [2533153] (imputed)	N
1875	chr3	169110018	169110019	rs16853637	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q26.2	MECOM	rs16853637-A	0.1552	5E-28		0.0106	[0.0086-0.0126] unit increase	Affymetrix, Illumina [8176554] (imputed)	N
1875	chr3	169111914	169111915	rs6779380	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Systolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3q26.2	MECOM	rs6779380-T	0.539	2E-13		0.439	[0.32-0.56] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1875	chr3	169111914	169111915	rs6779380	27618452	Ehret GB	2016-09-12	Nat Genet	The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.	Diastolic blood pressure	up to 201,529 European ancestry individuals	up to 140,886 European ancestry individuals	3q26.2	MECOM	rs6779380-T	0.539	7E-11		0.239	[0.17-0.31] mm Hg decrease	Affymetrix, Illumina, Perlegen [128272]	N
1875	chr3	169113109	169113110	rs2421647	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls	NA	3q26.2	MECOM	rs2421647-C	0.463343	2E-8		0.044606175	[0.029-0.06] unit increase	Affymetrix [7288503] (imputed)	N
1875	chr3	169117004	169117005	rs9290366	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.2		rs9290366-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1875	chr3	169117004	169117005	rs9290366	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3q26.2	MECOM	rs9290366-G	0.5428	3E-11		0.0236921	[0.017-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
1875	chr3	169117791	169117792	rs2115959	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q26.2	MECOM	rs2115959-A	0.4543	6E-14		0.0142	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
1875	chr3	169127518	169127519	rs17485347	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q26.2	MECOM	rs17485347-C	0.75	3E-9				NR [> 9500000] (imputed)	N
1875	chr3	169128273	169128274	rs1918966	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	3q26.2		rs1918966-?	NR	3E-6		0.09	[0.053-0.127] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1875	chr3	169129650	169129651	rs2421648	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q26.2		rs2421648-?	NR	2E-14				NR [~ 8900000] (imputed)	N
1875	chr3	169130139	169130140	rs112462098	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		MECOM	rs112462098-?	NR	3E-8	(female)	0.42403	[NR] unit increase	Affymetrix [NR] (imputed)	N
1875	chr3	169131329	169131330	rs9855086	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls	NA	3q26.2	MECOM	rs9855086-T	0.4614	6E-13		0.057911124	[0.042-0.074] unit decrease	Affymetrix [7288503] (imputed)	N
1875	chr3	169135913	169135914	rs76112240	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q26.2	MECOM	rs76112240-C	0.2104	2E-8		5.63	NR z score decrease	Illumina [26237160] (imputed)	N
1875	chr3	169136564	169136564	rs200122273	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	3q26.2		rs200122273-CTG	0.277954	6E-9		0.0185528	[0.012-0.025] unit increase	Illumina [13478778] (imputed)	N
1875	chr3	169137058	169137059	rs6780457	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q26.2		rs6780457-T	NR	3E-18		0.0187	[0.015-0.023] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
1875	chr3	169139889	169139890	rs1918969	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	3q26.2	MECOM	rs1918969-T	0.31	3E-6	(male)	0.309	[0.18-0.44] unit increase	Illumina [6380737] (imputed)	N
1875	chr3	169143097	169143098	rs1918970	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs1918970-A	NR	4E-12		0.0464	[0.033-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1875	chr3	169146496	169146497	rs2014590	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Systolic blood pressure x alcohol consumption (light vs heavy) interaction (2df test)	12,758 European ancestry heavy drinkers, 1,326 African American or Afro-Caribbean heavy drinkers, 648 Asian ancestry heavy drinkers, 364 Hispanic or Latin American heavy drinkers, 43,947 European ancestry light drinkers, 8,239 African American or Afro-Caribbean light drinkers, 1,141 Asian ancestry light drinkers, 4,448 Hispanic or Latin American light drinkers	42,078 European ancestry heavy drinkers, 217 African American heavy drinkers, 282,294 Asian ancestry heavy drinkers, 124 Hispanic heavy drinkers, 74,706 European ancestry light drinkers, 845 African American light drinkers, 24,129 Asian ancestry light drinkers, 411 Hispanic light drinkers	3q26.2	MECOM	rs2014590-T	0.56	5E-10	(Asian, EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169150631	169150632	rs16853722	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	3q26.2	MECOM	rs16853722-?	NR	2E-8		0.02359	[0.015-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
1875	chr3	169150631	169150632	rs16853722	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3q26.2	MECOM	rs16853722-C	0.29	3E-14		0.0064	[0.0048-0.0080] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
1875	chr3	169155475	169155476	rs62294340	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q26.2		rs62294340-A	NR	1E-20		0.017	[0.013-0.021] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1875	chr3	169155475	169155476	rs62294340	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q26.2	MECOM	rs62294340-A	0.3539	8E-11		0.021	[0.015-0.027] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1875	chr3	169155475	169155476	rs62294340	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	3q26.2	MECOM	rs62294340-A	0.364	5E-8		0.021858	[0.014-0.03] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
1875	chr3	169155475	169155476	rs62294340	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	3q26.2	NR	rs62294340-A	0.354	2E-6	(men)	0.0244	[0.014-0.034] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
1875	chr3	169165172	169165173	rs1918973	29912962	Feitosa MF	2018-06-18	PLoS One	Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries.	Mean arterial pressure x alcohol consumption interaction (2df test)	91,110 European ancestry drinkers and non-drinkers, 21,416 African American or Afro-Caribbean drinkers and non-drinkers, 12,365 Asian ancestry drinkers and non-drinkers, 8,470 Hispanic or Latin American drinkers and non-drinkers	237,996 European ancestry drinkers, 2,280 African American drinkers, 54,080 Asian ancestry drinkers, 6,448 Hispanic drinkers, 43,315 European ancestry non-drinkers, 2,761 African ancestry non-drinkers, 86,943 Asian ancestry non-drinkers, 6,923 Hispanic non-drinkers	3q26.2	LOC105374205, MECOM	rs1918973-A	0.46	2E-10	(EA)			Affymetrix, Illumina [up to 39321347] (imputed)	N
1875	chr3	169165887	169165888	rs1918974	19430483	Newton-Cheh C	2009-05-10	Nat Genet	Genome-wide association study identifies eight loci associated with blood pressure.	Diastolic blood pressure	34,433 European ancestry individuals	Up to 100,347 European ancestry individuals, up to 12,889 Indian Asian ancestry individuals	3q26.2	MDS1	rs1918974-T	0.54	8E-8		0.27	[0.17-0.37] mm Hg decrease	Affymetrix, Illumina [2497993] (imputed)	N
1875	chr3	169168370	169168371	rs10711289	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3q26.2	MECOM, RP11-641D5.2	rs10711289-G	0.5388	9E-10		0.02173332	[0.015-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1875	chr3	169171346	169171347	rs4955658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (diuretics)	34,453 European ancestry cases, 194,633 European ancestry controls, 22,356 East Asian ancestry cases, 156,370 East Asian ancestry controls	NA	3q26.2		rs4955658-G	NR	2E-8		0.0443	[0.029-0.06] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1875	chr3	169177923	169177924	rs9850919	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3q26.2	NR	rs9850919-T	NR	3E-9		0.0144	[0.0097-0.0191] unit decrease	Affymetrix [9000000] (imputed)	N
1875	chr3	169177923	169177924	rs9850919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q26.2	NR	rs9850919-C	0.405987	5E-8		0.00692584	[0.0044-0.0095] unit increase	Affymetrix [16578495] (imputed)	N
1875	chr3	169177923	169177924	rs9850919	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3q26.2	NR	rs9850919-C	0.405319	3E-13		0.0201136	[0.015-0.026] unit increase	Affymetrix [16580851] (imputed)	N
1875	chr3	169179875	169179876	rs1918975	33239696	Steinthorsdottir V	2020-11-25	Nat Commun	Genetic predisposition to hypertension is associated with preeclampsia in European and Central Asian women.	Preeclampsia (maternal genotype effect)	2,296 Central Asian ancestry cases, 2,059 Central Asian ancestry controls, 7,219 European ancestry cases, 155,660 European ancestry controls	592 Kazakh ancestry cases, 361 Kazakh ancestry controls, 2,043 European ancestry cases, 6,018 European ancestry controls	3q26.2		rs1918975-T	0.598	1E-8		1.1	[1.07-1.14]	Illumina [11796347] (imputed)	N
1875	chr3	169189151	169189152	rs34583012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3q26.2		rs34583012-G	NR	2E-22		0.0228	[0.018-0.027] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
1875	chr3	169189151	169189152	rs34583012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	3q26.2		rs34583012-G	NR	7E-23		0.024	[0.019-0.029] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
1875	chr3	169191427	169191428	rs1918978	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 9)	18,096 European individuals		3q26.2	NR	rs1918978-G	0.57681	3E-7		0.05499	[0.034-0.076] unit decrease	Affymetrix [14134301] (imputed)	N
1875	chr3	169191427	169191428	rs1918978	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 8)	18,096 European individuals		3q26.2	NR	rs1918978-G	0.57681	5E-10		0.066581	[0.046-0.088] unit decrease	Affymetrix [14134301] (imputed)	N
1875	chr3	169191427	169191428	rs1918978	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 7)	18,096 European individuals		3q26.2	NR	rs1918978-G	0.57681	2E-8		0.059978	[0.039-0.081] unit decrease	Affymetrix [14134301] (imputed)	N
1875	chr3	169191427	169191428	rs1918978	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 6)	18,096 European individuals		3q26.2	NR	rs1918978-G	0.57681	4E-7		0.054312	[0.033-0.075] unit decrease	Affymetrix [14134301] (imputed)	N
1875	chr3	169191427	169191428	rs1918978	32814899	Meyer HV	2020-08-19	Nature	Genetic and functional insights into the fractal structure of the heart.	Myocardial fractal dimension (slice 5)	18,096 European individuals		3q26.2	NR	rs1918978-G	0.57681	3E-6		0.049874	[0.029-0.071] unit decrease	Affymetrix [14134301] (imputed)	N
1875	chr3	169194243	169194244	rs73174306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q26.2		rs73174306-T	NR	2E-14		0.0475	[0.035-0.06] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
1875	chr3	169194243	169194244	rs73174306	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs73174306-T	NR	3E-14		0.0476	[0.035-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1875	chr3	169194243	169194244	rs73174306	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q26.2	RP11-641D5.2	rs73174306-T	0.039	2E-14	(Pancreatic hormone, PPY.4588.1.2)	0.49	[0.37-0.61] unit increase	Affymetrix [10572788] (imputed)	N
1875	chr3	169195665	169195666	rs73174309	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	3q26.2	MECOM	rs73174309-?	NR	1E-8		0.0867	[0.057-0.116] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
1875	chr3	169197332	169197333	rs2421649	32141789	Theriault S	2019-10-15	Circ Genom Precis Med	Genetic Association Analyses Highlight IL6, ALPL, and NAV1 As 3 New Susceptibility Genes Underlying Calcific Aortic Valve Stenosis.	Calcific aortic valve stenosis	5,115 European ancestry cases, 354,072 European ancestry controls	NA	3q26.2	MECOM	rs2421649-G	0.498	4E-6		1.13	[1.08-1.18]	Affymetrix, Illumina [8000000] (imputed)	N
1875	chr3	169197332	169197333	rs2421649	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	3q26.2	NR	rs2421649-G	0.496	1E-6	(EA)	0.048	[0.028-0.068] unit decrease	Affymetrix, Illumina [up to 10250422] (imputed)	N
1875	chr3	169199009	169199010	rs2421650	25865494	Chan Y	2015-04-09	Am J Hum Genet	Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development.	Sitting height ratio	3,545 African American individuals, 12,965 European ancestry women, 8,625 European ancestry men	NA	3q26.2	NR	rs2421650-A	0.503	1E-6	(EA)	0.047	[0.027-0.067] unit increase	Affymetrix, Illumina [up to 10250422] (imputed)	N
1875	chr3	169213558	169213559	rs6797464	29210060	Koster R	2017-12-06	Int J Cancer	Genome-wide association study identifies the GLDC/IL33 locus associated with survival of osteosarcoma patients.	Overall survival in osteosarcoma	523 European ancestry individuals	109 Brazilian ancestry individuals	3q26.2	NR	rs6797464-A	NR	3E-6		1.8	[1.41-2.30]	Illumina [510856]	N
1875	chr3	169213689	169213690	rs7641666	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	3q26.2	MECOM	rs7641666-?	NR	2E-6				Affymetrix, Illumina [4802696] (imputed)	N
1876	chr3	169222770	169222771	rs9816799	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3q26.2	MECOM	rs9816799-T	0.56	8E-6				Affymetrix, Illumina [8002429] (imputed)	N
1876	chr3	169225689	169225690	rs55641330	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.2	MECOM	rs55641330-?	NR	7E-14		0.022044964	[0.016-0.028] unit decrease	Illumina [27896057] (imputed)	N
1876	chr3	169233552	169233553	rs12488402	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.2	ARPM1	rs12488402-?	NR	2E-6	(citrulline)	0.50942034	[0.3-0.72] unit increase	Affymetrix [at least 2500000] (imputed)	N
1876	chr3	169238014	169238015	rs1997280	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q26.2		rs1997280-C	NR	8E-19		0.0125	[0.0098-0.0152] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
1876	chr3	169238014	169238015	rs1997280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.2		rs1997280-?	NR	2E-22				NR [~ 8900000] (imputed)	N
1876	chr3	169239577	169239578	rs4361323	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	3q26.2	MECOM	rs4361323-A	NR	3E-7		0.923301	[0.89-0.95]	Illumina [NR] (imputed)	N
1876	chr3	169239577	169239578	rs4361323	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	3q26.2	MECOM	rs4361323-A	NR	4E-8		0.919247	[0.89-0.95]	Illumina [NR] (imputed)	N
1876	chr3	169239577	169239578	rs4361323	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3q26.2	MECOM	rs4361323-A	NR	4E-6		0.0331	unit decrease	Illumina [15409056] (imputed)	N
1876	chr3	169240476	169240477	rs12493300	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.2	ARPM1	rs12493300-?	NR	4E-6	(ornithine)	0.482888	[0.28-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1876	chr3	169250602	169250603	rs9861426	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q26.2		rs9861426-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1876	chr3	169250602	169250603	rs9861426	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q26.2		rs9861426-?	NR	5E-12		0.015027	[0.011-0.019] unit increase	Affymetrix [20259828] (imputed)	N
1876	chr3	169252882	169252883	rs73174345	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	3q26.2	MECOM	rs73174345-T	NR	2E-8		1.1904762	[1.12-1.25]	Affymetrix [up to 40000000] (imputed)	N
1876	chr3	169265704	169265705	rs11709963	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	3q26.2	MECOM	rs11709963-C	0.160763	4E-8		0.14855401	[0.095-0.202] unit decrease	Affymetrix [7288503] (imputed)	N
1876	chr3	169270502	169270503	rs73174350	35157032	Ramachandran D	2022-02-14	Hum Mol Genet	Genome-wide association study and functional follow-up identifies 14q12 as a candidate risk locus for cervical cancer.	Cervical cancer	363 German ancestry cases, 861 German ancestry controls	NA	3q26.2	NR	rs73174350-G	0.0368	4E-6		30.183	[29.72-30.65]	Illumina [10000612] (imputed)	N
1876	chr3	169273098	169273099	rs77881800	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	3q26.2		rs77881800-T	NR	4E-8		0.0902	[0.058-0.122] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
1876	chr3	169275740	169275741	rs10936584	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q26.2		rs10936584-?	NR	3E-18				NR [~ 8900000] (imputed)	N
1876	chr3	169288542	169288543	rs2216360	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	3q26.2	MECOM	rs2216360-C	NR	3E-6		1.26	[NR] unit increase	Affymetrix [NR] (imputed)	N
1876	chr3	169289982	169289983	rs6444860	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q26.2	MECOM	rs6444860-C	NR	7E-10		0.0203128	[0.014-0.027] unit decrease	Affymetrix [321016] (imputed)	N
1876	chr3	169295007	169295008	rs1965029	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.2	MECOM	rs1965029-G	0.222657	2E-9		0.01614047	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1876	chr3	169295435	169295436	rs78101726	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	MECOM	rs78101726-A	0.8459	5E-16		0.0265	[0.02-0.033] unit increase	Affymetrix [19819130] (imputed)	N
1876	chr3	169295435	169295436	rs78101726	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	MECOM	rs78101726-A	0.8459	4E-8		0.0182	[0.012-0.025] unit increase	Affymetrix [19819130] (imputed)	N
1876	chr3	169295435	169295436	rs78101726	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q26.2	MECOM	rs78101726-A	0.8459	8E-25		0.0334	[0.027-0.04] unit increase	Affymetrix [19819130] (imputed)	N
1876	chr3	169295763	169295764	rs6770911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.2		rs6770911-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1876	chr3	169295763	169295764	rs6770911	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q26.2		rs6770911-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1876	chr3	169300218	169300219	rs1344555	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	3q26.2	MECOM	rs1344555-?	NR	4E-6	(FEV1, Pack-years)			NR [~ 2500000] (imputed)	N
1876	chr3	169300218	169300219	rs1344555	21946350	Soler Artigas M	2011-09-25	Nat Genet	Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.	Pulmonary function	48,201 European ancestry individuals	46,411 European ancestry individuals	3q26.2	MECOM	rs1344555-T	0.21	3E-8	(FEV1)	0.034	[0.022-0.046] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1876	chr3	169305416	169305417	rs11721111	30804561	Sakornsakolpat P	2019-02-25	Nat Genet	Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations.	Chronic obstructive pulmonary disease	35,735 cases, 222,076 controls	NA	3q26.2	MECOM	rs11721111-T	0.12	8E-6	(conditional on rs7642001)	1.07	[NR]	Affymetrix, Illumina [6224355] (imputed)	N
1876	chr3	169319800	169319801	rs10936588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs10936588-A	0.656136	1E-11				Affymetrix, Illumina [24649327] (imputed)	N
1876	chr3	169319800	169319801	rs10936588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q26.2	NR	rs10936588-A	0.636322	7E-14		0.014309	[0.011-0.018] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1876	chr3	169320057	169320058	rs11716015	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q26.2	NR	rs11716015-T	0.635724	1E-10		0.012851	[0.0089-0.0168] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
1876	chr3	169320057	169320058	rs11716015	31596875	Traylor M	2019-10-09	PLoS One	Genetic associations with radiological damage in rheumatoid arthritis: Meta-analysis of seven genome-wide association studies of 2,775 cases.	Joint damage in rheumatoid arthritis	2,527 European ancestry individuals, 196 African ancestry individuals, 52 individuals	NA	3q26.2	MECOM	rs11716015-?	NR	3E-6	(adjusted for rheumatoid factor)			Affymetrix, Illumina [4802696] (imputed)	N
1876	chr3	169320997	169320998	rs12494724	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q26.2	MECOM	rs12494724-T	0.633857	2E-9		0.013746805	[0.0093-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
1876	chr3	169322161	169322162	rs9869461	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.2	ARPM1	rs9869461-?	NR	9E-6	(lysine)	0.48130056	[0.27-0.69] unit increase	Affymetrix [at least 2500000] (imputed)	N
1876	chr3	169322957	169322958	rs6763377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q26.2		rs6763377-?	NR	9E-10				NR [~ 8900000] (imputed)	N
1876	chr3	169332832	169332833	rs7632977	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Total intracranial volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q26.2	MECOM	rs7632977-?		4E-6				Illumina [4322238] (imputed)	N
1877	chr3	169347831	169347832	rs7625357	26087016	Pappa I	2015-06-18	Am J Med Genet B Neuropsychiatr Genet	A genome-wide approach to children's aggressive behavior: The EAGLE consortium.	Childhood and early adolescence aggressive behavior	18,988 European ancestry individuals	NA	3q26.2	MECOM	rs7625357-T	0.33	4E-6				Affymetrix, Illumina [up to 3856236] (imputed)	N
1877	chr3	169355018	169355019	rs4955665	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	3q26.2	NR	rs4955665-T	NR	2E-9		1.245	NR	Illumina [at least 560000] (imputed)	N
1877	chr3	169355018	169355019	rs4955665	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	3q26.2	NR	rs4955665-T		4E-10		0.09	[0.07-0.11] unit increase	NR [NR]	N
1877	chr3	169355018	169355019	rs4955665	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q26.2	MECOM	rs4955665-T	0.606	6E-11		0.088	[0.063-0.113] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1877	chr3	169355018	169355019	rs4955665	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.2	MECOM	rs4955665-T	0.6065	3E-12		0.099	[0.07-0.128] unit increase	Affymetrix [~ 11900000] (imputed)	N
1877	chr3	169357957	169357958	rs11718956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.2		rs11718956-?	NR	7E-9				NR [~ 8900000] (imputed)	N
1877	chr3	169364598	169364599	rs34781085	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.2	MECOM	rs34781085-T	0.6385	1E-9		0.0848	[0.056-0.113] unit increase	Affymetrix [~ 11900000] (imputed)	N
1877	chr3	169459315	169459316	rs13073066	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	3q26.2	NR	rs13073066-T	NR	8E-6		1.1855	NR	Illumina [at least 560000] (imputed)	N
1877	chr3	169459324	169459325	rs28582745	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	3q26.2	Intergenic	rs28582745-A	NR	9E-7	(between families)	4.912	unit increase	Affymetrix [up to 15107142] (imputed)	N
1877	chr3	169464941	169464942	rs13097028	24980573	Song F	2014-06-30	Carcinogenesis	Identification of a melanoma susceptibility locus and somatic mutation in TET2.	Melanoma	494 European ancestry cases, 5,628 European ancestry controls	5,383 European ancestry cases, 13,033 European ancestry controls	3q26.2	ACTRT3	rs13097028-?		7E-7		1.1236	[1.08-1.18]	Affymetrix, Illumina [1579307] (imputed)	N
1878	chr3	169476991	169476993	rs146997182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Colon polyp	22,049 European ancestry cases, 332,368 European ancestry controls, 4,768 East Asian ancestry cases, 166,052 East Asian ancestry controls	NA	3q26.2		rs146997182-C	NR	5E-9		0.0697	[0.046-0.093] unit decrease	Affymetrix, Illumina [20457468] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q26.2		rs12638862-G	NR	6E-9		0.0116	[0.0077-0.0155] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q26.2		rs12638862-G	0.645509	4E-9		0.022037	[0.015-0.029] unit increase	Illumina [13476266] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q26.2		rs12638862-G	0.6457	1E-9		0.022986	[0.016-0.03] unit increase	Illumina [13476299] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs12638862-G	0.33807	1E-12				Affymetrix, Illumina [24588908] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q26.2	TERC	rs12638862-G	0.7348	5E-12		0.258	[0.18-0.33] mmHg increase	Affymetrix [NR] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	30194396	Rafnar T	2018-09-07	Nat Commun	Variants associating with uterine leiomyoma highlight genetic background shared by various cancers and hormone-related traits.	Uterine fibroids	16,595 European ancestry cases, 523,330 European ancestry controls	NA	3q26.2	TERC	rs12638862-A	0.7851	3E-8		1.0752687	[1.05-1.11]	Affymetrix, Illumina [43421991] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3q26.2	MECOM, TERC	rs12638862-?	NR	3E-11		0.02925	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q26.2	MECOM, TERC	rs12638862-?	NR	3E-11		0.02924	[0.021-0.038] unit increase novel	Illumina [6108953] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	29151059	Delgado DA	2017-11-18	J Med Genet	Genome-wide association study of telomere length among South Asians identifies a second RTEL1 association signal.	Telomere length	5,075 Bangladeshi ancestry individuals	NA	3q26.2	TERC	rs12638862-G	0.24	2E-8		0.13	[0.091-0.169] unit decrease	Illumina [~ 6300000] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	3q26.2	TERC	rs12638862-A	NR	2E-11				Illumina [10806625] (imputed)	N
1878	chr3	169477505	169477506	rs12638862	23502783	Weinhold N	2013-03-17	Nat Genet	The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma.	Multiple myeloma (IgH translocation)	up to 1,660 European ancestry cases, 7,306 European ancestry controls		3q26.2	NR	rs12638862-A	0.74	2E-6	(Any IgH translocation vs. controls)	1.37	[1.20-1.56]	Illumina [414804] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q26.2	NR	rs12696304-G	0.265614	1E-9		0.00771193	[0.0052-0.0103] unit increase	Affymetrix [16582621] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q26.2	NR	rs12696304-G	0.265614	2E-9		0.00813109	[0.0054-0.0109] unit increase	Affymetrix [16582614] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	31710517	Allen RJ	2019-11-11	Am J Respir Crit Care Med	Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis.	Idiopathic pulmonary fibrosis	2,668 European ancestry cases, 8,591 European ancestry controls	1,456 European ancestry cases, 11,874 European ancestry controls	3q26.2	LRRC34	rs12696304-G	0.279	7E-13		1.31	[1.21-1.40]	Affymetrix, Illumina [10790934] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.2		rs12696304-?	NR	5E-9				NR [~ 8900000] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count or cutaneous melanoma	52,506 European ancestry individuals, 12,874 European ancestry cases, 23,203 European ancestry controls	NA	3q26.2	TERC	rs12696304-?	NR	8E-10				Affymetrix, Illumina [7850345] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	30429480	Duffy DL	2018-11-14	Nat Commun	Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.	Nevus count	52,506 European ancestry individuals	NA	3q26.2	TERC	rs12696304-?	NR	6E-6	(fixed effects)			Affymetrix, Illumina [up to 31337615] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	26237428	Law MH	2015-08-03	Nat Genet	Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.	Cutaneous malignant melanoma	12,874 European ancestry cases, 23,203 European ancestry controls	785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls	3q26.2	TERC	rs12696304-G	0.27	3E-7		0.092	[NR] unit decrease	Affymetrix, Illumina [at least 1569314] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	21573004	Prescott J	2011-05-10	PLoS One	Genome-wide association study of relative telomere length.	Telomere length	3,554 European ancestry individuals	2,460 European ancestry individuals	3q26.2	TERC	rs12696304-G	0.27	2E-14		0.03	[0.02-0.04] unit decrease	Illumina [2608509] (imputed)	N
1878	chr3	169481270	169481271	rs12696304	20139977	Codd V	2010-02-07	Nat Genet	Common variants near TERC are associated with mean telomere length.	Telomere length	2,917 European ancestry individuals	9,492 European ancestry individuals	3q26.2	TERC	rs12696304-G	0.30	4E-14		0.11	[0.08-0.14] unit decrease	Affymetrix [405649]	N
1878	chr3	169482334	169482335	rs2293607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	21,024 European ancestry cases, 237,694 European ancestry controls, 14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	3q26.2		rs2293607-C	NR	2E-19		0.0845	[0.066-0.103] unit decrease	Affymetrix, Illumina [25795146] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q26.2		rs2293607-C	NR	1E-22		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q26.2		rs2293607-C	NR	4E-20		0.0204	[0.016-0.025] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q26.2	NR	rs2293607-T	NR	2E-13		1.06	[1.04-1.08]	Affymetrix, Illumina [29235255] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	3q26.2	NR	rs2293607-T	NR	2E-10		1.1	[1.06-1.13]	NR [NR] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	3q26.2	NR	rs2293607-T	NR	1E-15		1.14	[1.11-1.18]	NR [NR] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q26.2	NR	rs2293607-C	0.244809	2E-14		0.016113	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3q26.2		rs2293607-T	NR	2E-11		1.082	[1.057-1.107]	Affymetrix [7846216] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q26.2	NR	rs2293607-T	0.45	3E-9	(East Asian)	1.12	[1.08-1.17]	Illumina [~ 11000000] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q26.2	MYNN	rs2293607-T	0.596	2E-10		1.1	[1.06-1.13]	Illumina [~ 11000000] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q26.2	NR	rs2293607-T	0.58	1E-15		1.14	[1.11-1.18]	Illumina [~ 11000000] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q26.2	NR	rs2293607-T	0.45	6E-12	(East Asian)	1.16	[1.11-1.21]	Illumina [~ 11000000] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	3q26.2	TERC	rs2293607-C	NR	8E-39	(East Asian)	0.12	NR unit decrease	Illumina [6407959] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	31171785	Dorajoo R	2019-06-06	Nat Commun	Loci for human leukocyte telomere length in the Singaporean Chinese population and trans-ethnic genetic studies.	Leukocyte telomere length	16,759 Singaporean Han Chinese ancestry individuals	6,337 Singaporean Chinese ancestry individuals, up to 37,505 European ancestry individuals	3q26.2	TERC	rs2293607-C	NR	5E-48		0.093	NR unit decrease	Illumina [6407959] (imputed)	N
1878	chr3	169482334	169482335	rs2293607	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	3q26.2	TERC	rs2293607-C	0.752	1E-11		0.1976	[0.14-0.25] mmHg increase	Affymetrix [NR] (imputed)	N
1878	chr3	169486507	169486508	rs35446936	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q26.2		rs35446936-A	NR	1E-20		0.0179	[0.014-0.022] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1878	chr3	169486507	169486508	rs35446936	31649266	Gallagher CS	2019-10-24	Nat Commun	Genome-wide association and epidemiological analyses reveal common genetic origins between uterine leiomyomata and endometriosis.	Uterine fibroids	20,406 European ancestry cases, 223,918 European ancestry controls	15,068 European ancestry cases, 43,587 European ancestry controls	3q26.2	TERC	rs35446936-A	0.24	1E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [8662096] (imputed)	N
1878	chr3	169486507	169486508	rs35446936	31089142	Law PJ	2019-05-14	Nat Commun	Association analyses identify 31 new risk loci for colorectal cancer susceptibility.	Colorectal cancer	31,197 European ancestry cases, 61,770 European ancestry controls	NA	3q26.2	NR	rs35446936-G	NR	6E-8		1.07	[1.05-1.10]	Affymetrix, Illumina [> 10000000] (imputed)	N
1878	chr3	169487436	169487437	rs12637184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs12637184-A	0.311707	3E-19				Affymetrix, Illumina [24246363] (imputed)	N
1878	chr3	169487436	169487437	rs12637184	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q26.2	NR	rs12637184-A	0.244435	2E-12		0.015781	[0.011-0.02] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1878	chr3	169487436	169487437	rs12637184	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q26.2		rs12637184-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1878	chr3	169487436	169487437	rs12637184	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	3q26.2	ACTRT3	rs12637184-?	NR	3E-8		0.02466	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1878	chr3	169487500	169487501	rs9811216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q26.2	ACTRT3	rs9811216-C	0.2616	9E-11		0.02646712	[0.018-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
1878	chr3	169487500	169487501	rs9811216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q26.2	ACTRT3	rs9811216-C	0.2615	6E-14		0.03071594	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1878	chr3	169487500	169487501	rs9811216	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q26.2	ACTRT3	rs9811216-C	0.2616	2E-12		0.02869912	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
1878	chr3	169488147	169488148	rs55735727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q26.2	RP11-816J6.3	rs55735727-T	0.269208	7E-12		0.017252116	[0.012-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1878	chr3	169488147	169488148	rs55735727	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3q26.2	NR	rs55735727-A	0.339935	8E-10		0.026771	[0.018-0.035] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
1878	chr3	169488147	169488148	rs55735727	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q26.2	NR	rs55735727-T	0.269447	3E-13		0.00673382	[0.0049-0.0086] unit increase	Affymetrix [16582909] (imputed)	N
1878	chr3	169488147	169488148	rs55735727	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q26.2	NR	rs55735727-T	0.269447	5E-10		0.0066674	[0.0046-0.0088] unit increase	Affymetrix [16582965] (imputed)	N
1878	chr3	169488690	169488691	rs191674933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q26.2	RP11-816J6.3	rs191674933-T	0.240215	6E-22		0.025089584	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169488690	169488691	rs191674933	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q26.2	RP11-816J6.3	rs191674933-T	0.240199	1E-21		0.024951473	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169488690	169488691	rs191674933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs191674933-T	0.302371	1E-23				Affymetrix, Illumina [19872809] (imputed)	N
1878	chr3	169488690	169488691	rs191674933	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q26.2	NR	rs191674933-T	0.240219	4E-25		0.024869	[0.02-0.03] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1878	chr3	169489081	169489082	rs28465436	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q26.2	RP11-816J6.3	rs28465436-C	0.24764	2E-9		0.015442946	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1878	chr3	169489311	169489312	rs28649851	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	3q26.2	ACTRT3, MYNN	rs28649851-A	0.712527359	5E-6		1.0917237	[1.05-1.13]	Illumina [10439017] (imputed)	N
1878	chr3	169491728	169491729	rs2251795	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Uterine fibroids	14,475 East Asian ancestry cases, 65,733 East Asian ancestry controls	NA	3q26.2		rs2251795-A	0.647396822	3E-10		0.08990395	[0.062-0.118] unit decrease	Illumina [13401454] (imputed)	N
1878	chr3	169492016	169492016	rs34847803	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q26.2		rs34847803-TA	NR	5E-16		0.0152	[0.011-0.019] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	33875642	Duran-Lozano L	2021-04-19	Blood Cancer J	Germline variants at SOHLH2 influence multiple myeloma risk.	Multiple myeloma	4,376 European ancestry cases, 345,887 European ancestry controls	5,598 European ancestry cases, 15,261 European ancestry controls	3q26.2	ACTRT3, MYNN, LRRC34	rs10936599-C	0.76	3E-8		1.16	[NR]	Illumina [33000000] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	31826910	Lu Y	2019-12-11	Cancer Epidemiol Biomarkers Prev	Identification of novel loci and new risk variant in known loci for colorectal cancer risk in East Asians.	Colorectal cancer	23,572 East Asian ancestry cases, 48,700 East Asian ancestry controls	58,131 European ancestry cases, 67,347 European ancestry controls	3q26.2	MYNN	rs10936599-C	NR	9E-6	(East Asian)	1.06	[1.03-1.09]	Affymetrix, Illumina [up to 47000000] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	30529582	Lu Y	2018-12-06	Gastroenterology	Large-scale Genome-wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.	Colorectal cancer	22,775 East Asian ancestry cases, 47,731 East Asian ancestry controls	NA	3q26.2	MYNN	rs10936599-C	0.39	2E-6		1.06	[1.04-1.09]	Affymetrix, Illumina [up to 10700000] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	24292274	Speedy HE	2013-12-01	Nat Genet	A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	1,739 European ancestry cases, 5,199 European ancestry controls	1,144 European ancestry cases, 3,151 European ancestry controls	3q26.2	MYNN	rs10936599-C		2E-9		1.26	[1.17-1.35]	Illumina [450000] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	6,911 European ancestry cases, 11,818 European ancestry controls	801 cases, 1,307 controls	3q26.2	ACTRT3, MYNN, TERC, LRRC34	rs10936599-C	0.76	5E-9		1.1765	[1.11-1.23]	Illumina [462190]	N
1878	chr3	169492100	169492101	rs10936599	23955597	Chubb D	2013-08-18	Nat Genet	Common variation at 3q26.2, 6p21.33, 17p11.2 and 22q13.1 influences multiple myeloma risk.	Multiple myeloma	2,335 European ancestry cases, 7,306 European ancestry controls	2,357 European ancestry cases, 3,684 European ancestry controls	3q26.2	MYNN, TERC	rs10936599-G	0.8	9E-14		1.256	[1.18-1.33]	Illumina [414804]	N
1878	chr3	169492100	169492101	rs10936599	23535734	Codd V	2013-04-01	Nat Genet	Identification of seven loci affecting mean telomere length and their association with disease.	Telomere length	37,684 European ancestry individuals	10,739 European ancestry individuals	3q26.2	TERC	rs10936599-T	0.252	3E-31		0.097	[0.081-0.113] unit decrease	Affymetrix, Illumina [2362330]	N
1878	chr3	169492100	169492101	rs10936599	21833088	Sawcer S	2011-08-11	Nature	Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.	Multiple sclerosis	9,772 European ancestry cases, 16,849 European ancestry controls	4,218 European ancestry cases, 7,296 European ancestry controls	3q26.2	MYNN	rs10936599-G	NR	7E-7		1.1	[1.08-1.11]	Illumina [465434]	N
1878	chr3	169492100	169492101	rs10936599	20972440	Houlston RS	2010-10-24	Nat Genet	Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.	Colorectal cancer	3,334 European ancestry cases, 4,628 European ancestry controls	14,851 European ancestry cases, 15,569 European ancestry controls	3q26.2	MYNN	rs10936599-C	NR	3E-8		1.04	[1.04-1.10]	Illumina [up to 550000] (imputed)	N
1878	chr3	169492100	169492101	rs10936599	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q26.2	intergenic	rs10936599-A	0.25	5E-7		1.12	[1.07-1.16]	Illumina [292387]	N
1878	chr3	169493282	169493283	rs3950296	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Cutaneous malignant melanoma	36,760 European ancestry cases, 375,188 European ancestry controls	NA	3q26.2	MYNN	rs3950296-C	0.7469	4E-11		1.0775	NR	Affymetrix, Illumina [NR] (imputed)	N
1878	chr3	169493282	169493283	rs3950296	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q26.2		rs3950296-?	NR	2E-21				NR [~ 8900000] (imputed)	N
1878	chr3	169497584	169497585	rs1317082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3q26.2		rs1317082-G	0.643904	3E-11		0.0216633	[0.015-0.028] unit decrease	Illumina [13479135] (imputed)	N
1878	chr3	169497584	169497585	rs1317082	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	3q26.2	MYNN	rs1317082-A	0.43	2E-11		1.102	[1.07-1.13]	Illumina [11270530] (imputed)	N
1878	chr3	169497584	169497585	rs1317082	23001564	Mangino M	2012-09-25	Hum Mol Genet	Genome-wide meta-analysis points to CTC1 and ZNF676 as genes regulating telomere homeostasis in humans.	Telomere length	9,190 European ancestry individuals	2,226 individuals	3q26.2	TERC	rs1317082-G	0.2875	1E-8		0.0679	[0.046-0.089] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1878	chr3	169500486	169500487	rs3772190	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs3772190-A	0.316824	7E-18				Affymetrix, Illumina [20825802] (imputed)	N
1878	chr3	169500486	169500487	rs3772190	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	3q26.2	MYNN	rs3772190-?	NR	4E-8		0.02421	[0.016-0.033] unit decrease novel	Illumina [6108953] (imputed)	N
1878	chr3	169500486	169500487	rs3772190	28346443	Melin BS	2017-03-27	Nat Genet	Genome-wide association study of glioma subtypes identifies specific differences in genetic susceptibility to glioblastoma and non-glioblastoma tumors.	Glioma	12,469 European ancestry cases, 18,190 European ancestry controls.	NA	3q26.2	TERC	rs3772190-G	0.757	2E-6		1.11	1.06-1.15	Illumina [at least 6887412] (imputed)	N
1878	chr3	169508271	169508272	rs13069553	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q26.2		rs13069553-G	NR	2E-13		0.0172	[0.013-0.022] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
1878	chr3	169508271	169508272	rs13069553	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or systemic lupus erythematosus	2,492 European ancestry chronic lymphocytic leukemia cases, 7,219 European ancestry systemic lupus erythematosus cases, 23,144 European ancestry controls	NA	3q26.2	Intergenic	rs13069553-?	NR	2E-9		1.1627907		Illumina [~ 600000] (imputed)	N
1878	chr3	169514584	169514585	rs10936600	32341527	Landi MT	2020-04-27	Nat Genet	Genome-wide association meta-analyses combining multiple risk phenotypes provide insights into the genetic architecture of cutaneous melanoma susceptibility.	Nevus count or cutaneous melanoma	36,760 European ancestry cutaneous melanoma cases, 375,188 European ancestry controls, 12,930 European ancestry individuals, 52,847 individuals	NA	3q26.2	MYNN	rs10936600-A	0.747244	5E-16				Affymetrix, Illumina [NR] (imputed)	N
1878	chr3	169514584	169514585	rs10936600	32109421	Li C	2020-02-20	Am J Hum Genet	Genome-Wide Association Analysis in Humans Links Nucleotide Metabolism to Leukocyte Telomere Length.	Leukocyte telomere length	78,592 European ancestry individuals	NA	3q26.2	TERC	rs10936600-T	0.24	7E-51		0.086	[0.074-0.098] unit decrease	Affymetrix, Illumina, Perlegen [up to 30071938] (imputed)	N
1878	chr3	169514584	169514585	rs10936600	27363682	Mitchell JS	2016-07-01	Nat Commun	Genome-wide association study identifies multiple susceptibility loci for multiple myeloma.	Multiple myeloma	7,319 European ancestry cases, 234,385 European ancestry controls	2,547 European ancestry cases, 4,803 European ancestry controls	3q26.2	NR	rs10936600-A		6E-15		1.2	[1.15-1.26]	Illumina [at least 7182761] (imputed)	N
1878	chr3	169517435	169517436	rs9876206	30510241	Huyghe JR	2018-12-03	Nat Genet	Discovery of common and rare genetic risk variants for colorectal cancer.	Colorectal cancer or advanced adenoma	55,105 European ancestry cases, 3,026 East Asian ancestry cases, 65,079 European ancestry controls, 2,268 East Asian ancestry controls	NA	3q26.2	TERC, MYNN	rs9876206-C	0.7507	8E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [16900397] (imputed)	N
1878	chr3	169518454	169518455	rs6793295	31407831	Din L	2019-08-13	Genet Epidemiol	Genetic overlap between autoimmune diseases and non-Hodgkin lymphoma subtypes.	Chronic lymphocytic leukemia or multiple sclerosis	2,492 European ancestry chronic lymphocytic leukemia cases, 9,772 European ancestry multiple sclerosis cases, 24,529 European ancestry controls	NA	3q26.2	LRRC34	rs6793295-?	NR	2E-9		1.1072971		Illumina [~ 460000] (imputed)	N
1878	chr3	169518454	169518455	rs6793295	28195142	Gudmundsson J	2017-02-14	Nat Commun	A genome-wide association study yields five novel thyroid cancer risk loci.	Thyroid cancer	2,637 European ancestry cases, 364 non-array typed, familial imputed Icelandic ancestry cases, 134,811 European ancestry controls, 152,739 non-array typed, familial imputed Icelandic ancestry controls.	NA	3q26.2	LRRC34, TERC	rs6793295-T	0.759	3E-8		1.23	1.15-1.33	Illumina [7100000] (imputed)	N
1878	chr3	169518454	169518455	rs6793295	26007630	Swaminathan B	2015-05-26	Nat Commun	Variants in ELL2 influencing immunoglobulin levels associate with multiple myeloma.	Multiple myeloma and monoclonal gammopathy	2,194 European ancestry multiple myeloma cases, 251 European ancestry monoclonal gammopathy cases, 294,390 European ancestry controls	586 European ancestry multiple myeloma cases, 2,111 European ancestry controls	3q26.2	MYNN, LRRC34	rs6793295-T	0.74	7E-6		0.16	[NR] unit increase	Illumina [12100000] (imputed)	N
1878	chr3	169518454	169518455	rs6793295	23583980	Fingerlin TE	2013-04-14	Nat Genet	Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.	Interstitial lung disease	1,161 European ancestry cases, 4,683 European ancestry controls	876 European ancestry cases, 1,890 European ancestry controls	3q26.2	LRRC34	rs6793295-C	0.26	8E-13		1.3	[1.19-1.42]	Illumina [439828]	N
1878	chr3	169528448	169528449	rs10936601	23900074	Pooley KA	2013-07-29	Hum Mol Genet	A genome-wide association scan (GWAS) for mean telomere length within the COGS project: identified loci show little association with hormone-related cancer risk.	Telomere length	2,240 European ancestry individuals	11,024 breast cancer cases, 15,065 controls	3q26.2	TERC	rs10936601-?	0.27	4E-15		4.0E-4	[0.00029-0.00051] unit increase	Illumina, Perlegen [2448093] (imputed)	N
1878	chr3	169529894	169529895	rs67795055	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q26.2		rs67795055-C	0.776	2E-9		0.08	[-0.11--0.05] % decrease	Affymetrix [NR] (imputed)	N
1878	chr3	169529894	169529895	rs67795055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q26.2	LRRC34	rs67795055-A	0.225277	8E-13		0.019390786	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169529894	169529895	rs67795055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q26.2	LRRC34	rs67795055-A	0.225059	6E-11		0.0178191	[0.013-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169529894	169529895	rs67795055	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.2	LRRC34	rs67795055-A	0.225049	2E-12		0.018788492	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169529894	169529895	rs67795055	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.2		rs67795055-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1878	chr3	169534462	169534463	rs34890404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q26.2	LRRC34	rs34890404-C	0.377254	3E-9		0.013854022	[0.0093-0.0184] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169536636	169536637	rs10936602	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q26.2	LRRC34	rs10936602-T	NR	2E-11		1.0766	NR	Affymetrix, Illumina [8278136] (imputed)	N
1878	chr3	169536636	169536637	rs10936602	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	3q26.2	LRRIQ4	rs10936602-T	0.73	9E-9		1.11		Illumina [7437091] (imputed)	N
1878	chr3	169550758	169550759	rs12486767	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Cancer	56,634 White British ancestry cases, 218,196 White British ancestry controls	NA	3q26.2		rs12486767-?	NR	7E-6		0.968444	[0.95-0.98]	NR [688737]	N
1878	chr3	169555089	169555090	rs185473131	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	3q26.2	NR	rs185473131-T	NR	2E-6		3.744	[2.17-6.48]	Illumina [13976150] (imputed)	N
1878	chr3	169565029	169565030	rs12490581	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q26.2	LRRC31	rs12490581-A	0.318313	3E-10		0.015029847	[0.01-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1878	chr3	169579970	169579971	rs1920116	24908248	Walsh KM	2014-06-08	Nat Genet	Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk.	Glioma (high-grade)	1,013 European ancestry cases, 6,595 European ancestry controls	631 European ancestry cases, 1,141 European ancestry controls	3q26.2	TERC	rs1920116-G	0.72	8E-9		1.3	[1.19-1.42]	Affymetrix, Illumina [2362330] (imputed)	N
1878	chr3	169604977	169604978	rs73038204	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	3q26.2		rs73038204-T	NR	1E-5		1.34	[1.18-1.52]	Illumina [7591411] (imputed)	N
1879	chr3	169708290	169708291	rs17217370	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	3q26.2	NR	rs17217370-A	0.9988	2E-6		0.30127034	[0.18-0.43] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
1879	chr3	169732745	169732746	rs150501030	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Abdominal aortic calcification levels	9,417 European ancestry individuals	1,595 African American individuals, 496 Hispanic or Latin American individuals	3q26.2	NR	rs150501030-G	0.019	1E-7	(EA)	5.28	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
1880	chr3	169756118	169756119	rs3755605	28604732	Wang Z	2017-06-12	Nat Genet	Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.	Testicular germ cell tumor	3,558 European ancestry cases, 13,970 European ancestry controls	NA	3q26.2	GPR160	rs3755605-T	0.4	4E-9		1.19	1.12-1.26	Illumina [9210350] (imputed)	N
1880	chr3	169801657	169801658	rs6444895	25854761	Zuo X	2015-04-09	Nat Commun	Whole-exome SNP array identifies 15 new susceptibility loci for psoriasis.	Psoriasis	11,245 Han Chinese ancestry cases, 11,177 Han Chinese ancestry controls	6,369 Han Chinese ancestry cases, 13,969 Han Chinese ancestry controls	3q26.2	GPR160	rs6444895-?		1E-12		1.11	1.09-1.16	Illumina [87827]	N
1880	chr3	169831267	169831268	rs73181210	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Systolic blood pressure	422,713 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	4E-12		0.0872788	[0.063-0.112] unit decrease	NR [9800000] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	2E-16		0.0981078	[0.075-0.122] unit decrease	NR [9800000] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	9E-11		0.065541	[0.047-0.084] unit increase	NR [9800000] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Diastolic blood pressure	422,713 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	1E-13		0.0908185	[0.067-0.115] unit decrease	NR [9800000] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q26.2		rs73181210-T	0.991	2E-14		0.9175018	[0.67-1.16] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	3q26.2		rs73181210-T	0.9912	3E-13		7.31145	z score increase	Affymetrix, Illumina [239843] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q26.2		rs73181210-T	0.991	9E-15		0.58286583	[0.43-0.73] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q26.2	PHC3	rs73181210-T	0.9928	6E-15		0.087	[0.065-0.109] unit decrease	Affymetrix [18391927] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	3q26.2	PHC3	rs73181210-T	0.993	3E-7		0.08	[0.051-0.109] unit decrease	Affymetrix [18391927] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	3q26.2	PHC3	rs73181210-T	0.993	5E-9		0.1	[0.067-0.133] unit decrease	Affymetrix [18391927] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1880	chr3	169831267	169831268	rs73181210	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.2		rs73181210-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1880	chr3	169839238	169839239	rs6808506	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q26.2		rs6808506-?	NR	2E-6		0.879657	[0.83-0.93]	NR [680312]	N
1880	chr3	169839238	169839239	rs6808506	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q26.2		rs6808506-?	NR	9E-8				NR [~ 8900000] (imputed)	N
1881	chr3	169922352	169922353	rs191482666	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Cancer (pleiotropy)	64,962 European ancestry cases, 410,350 European ancestry controls	NA	3q26.2		rs191482666-G	NR	6E-8		1.1428571	[1.09-1.2]	Affymetrix [7846216] (imputed)	N
1881	chr3	169999215	169999216	rs71277158	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3q26.2	NR	rs71277158-T	NR	4E-11		1.14	NR	Affymetrix [at least 232408] (imputed)	N
1881	chr3	169999215	169999216	rs71277158	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer	4,600 European ancestry cases, 2,941 European ancestry controls	7,779 European ancestry cases, 7,623 European ancestry controls	3q26.2	PRKCI	rs71277158-T	0.82	8E-14		1.22	[1.15-1.28]	Illumina [1531807] (imputed)	N
1882	chr3	170003562	170003563	rs191153365	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q26.2	NR	rs191153365-?	NR	3E-6	(Native Hawaiian)	1.2581	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
1882	chr3	170015661	170015662	rs114153063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q26.2		rs114153063-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1882	chr3	170027406	170027407	rs112607182	31630189	Casanova F	2019-10-20	Hum Mol Genet	A genome-wide association study implicates multiple mechanisms influencing raised urinary albumin-creatinine ratio.	Urinary albumin-to-creatinine ratio	437,027 European ancestry individuals	60,130 individuals	3q26.2	PRKCI	rs112607182-T	0.075	1E-12	(EA)	0.028	[0.02-0.036] unit increase	NR [12082474] (imputed)	N
1882	chr3	170027406	170027407	rs112607182	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals, 6,795 African American individuals, 6,324 East Asian ancestry individuals, 2,335 South Asian ancestry individuals, 1,442 Hispanic individuals	NA	3q26.2	PRKCI	rs112607182-T	NR	7E-14		0.0306	[0.023-0.039] unit increase	Affymetrix, Illumina [8034757] (imputed)	N
1882	chr3	170027406	170027407	rs112607182	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Urinary albumin-to-creatinine ratio	547,361 European ancestry individuals	NA	3q26.2	PRKCI	rs112607182-T	0.0751	2E-13		0.0301346	[0.022-0.038] unit increase	Affymetrix, Illumina [8603712] (imputed)	N
1882	chr3	170027406	170027407	rs112607182	31511532	Teumer A	2019-09-11	Nat Commun	Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria.	Microalbuminuria	51,861 European, African American, East Asian, South Asian or Hispanic ancestry cases, 297,093 European, African American, East Asian, South Asian or Hispanic ancestry controls	NA	3q26.2	PRKCI	rs112607182-T	NR	5E-8		1.0787468	[1.05-1.11]	Affymetrix, Illumina [8326000] (imputed)	N
1882	chr3	170027406	170027407	rs112607182	30220432	Haas ME	2018-09-06	Am J Hum Genet	Genetic Association of Albuminuria with Cardiometabolic Disease and Blood Pressure.	Urinary albumin excretion	382,500 European ancestry individuals	NA	3q26.2	PRKCI	rs112607182-T	0.077	3E-12		0.02279	[0.016-0.029] unit increase	Affymetrix [11709857] (imputed)	N
1882	chr3	170036640	170036641	rs6768593	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q26.2	NR	rs6768593-A	0.404	7E-6	(Females)	0.198823	[0.11-0.28] unit increase	Illumina [~ 6600000] (imputed)	N
1882	chr3	170066338	170066339	rs76925190	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q26.2		rs76925190-?	NR	5E-10		0.86202	[0.82-0.91]	NR [680312]	N
1882	chr3	170070701	170070702	rs1525362	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q26.2	SKIL	rs1525362-T	0.8688	6E-9		0.0028	[0.0018-0.0038] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1882	chr3	170073338	170073339	rs12489967	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q26.2		rs12489967-C	NR	5E-14		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
1882	chr3	170073338	170073339	rs12489967	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3q26.2	PRKCI, SKIL	rs12489967-C	0.84	1E-9		6.11	z-score increase	Affymetrix [4314223] (imputed)	N
1882	chr3	170074373	170074374	rs57508070	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q26.2	NR	rs57508070-A	NR	1E-10		0.0226	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
1882	chr3	170074516	170074517	rs78416326	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3q26.2		rs78416326-C	NR	2E-24		0.1545	[0.12-0.18] unit decrease	Affymetrix, Illumina [25775424] (imputed)	N
1882	chr3	170074516	170074517	rs78416326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	3q26.2	NR	rs78416326-G	0.799617928	5E-20		1.2318585	[1.18-1.29]	Affymetrix, Illumina [20400945] (imputed)	N
1882	chr3	170074516	170074517	rs78416326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q26.2	NR	rs78416326-G	NR	5E-99		1.206	[1.18-1.23]	Affymetrix, Illumina [29235255] (imputed)	N
1882	chr3	170074516	170074517	rs78416326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	8,611 East Asian ancestry cases, 18,809 East Asian ancestry controls	NA	3q26.2	NR	rs78416326-G	0.781	3E-11		1.162	[1.11-1.21]	Affymetrix, Illumina [10186136] (imputed)	N
1882	chr3	170074516	170074517	rs78416326	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	2,714 Hispanic cases, 5,239 Hispanic controls	NA	3q26.2	NR	rs78416326-G	0.765	2E-9		1.275	[1.18-1.38]	Affymetrix, Illumina [11334207] (imputed)	N
1882	chr3	170083540	170083545	rs577952184	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q26.2	NR	rs577952184-C	NR	5E-18		1.1	[1.08-1.12]	Affymetrix, Illumina [29235255] (imputed)	N
1882	chr3	170091901	170091902	rs9682041	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	3q26.2	SKIL	rs9682041-T	0.87	3E-8		0.0068	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1882	chr3	170091901	170091902	rs9682041	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate (creatinine)	133,413 European ancestry individuals	42,166 European ancestry individuals, up to 16,471 African ancestry individuals, up to 42,296 Asian ancestry individuals	3q26.2	SKIL	rs9682041-T	0.87	4E-8		0.0056	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1882	chr3	170129608	170129608	rs74651796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Prostate cancer	5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls	NA	3q26.2		rs74651796-GT	0.20108091	1E-9		0.16636555	[0.11-0.22] unit decrease	Illumina [13406905] (imputed)	N
1882	chr3	170129608	170129608	rs74651796	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Prostate cancer	5,408 Japanese ancestry cases, 103,939 Japanese ancestry controls	NA	3q26.2		rs74651796-GT	0.202408716	1E-8		0.84977394	[0.803651951-0.89854287]	Illumina [8919992] (imputed)	N
1882	chr3	170130101	170130102	rs10936632	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3q26.2	NR	rs10936632-A	NR	8E-6		1.07	NR	Affymetrix [at least 232408] (imputed)	N
1882	chr3	170130101	170130102	rs10936632	29892016	Schumacher FR	2018-06-11	Nat Genet	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.	Prostate cancer	79,148 European ancestry cases, 61,106 European ancestry controls	NA	3q26.2	NR	rs10936632-A	0.51	3E-34		1.1	[1.08-1.12]	Illumina [20370935] (imputed)	N
1882	chr3	170130101	170130102	rs10936632	21743467	Kote-Jarai Z	2011-07-10	Nat Genet	Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.	Prostate cancer	6,621 European ancestry cases, 6,939 European ancestry controls	22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls	3q26.2	CLDN11, SKIL	rs10936632-A	0.52	7E-22		1.11	[1.08-1.14]	NR [2600000] (imputed)	N
1883	chr3	170163473	170163474	rs6444931	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3q26.2	TMEM212	rs6444931-?	NR	6E-7		1.3421	[NR]	Affymetrix [722112]	N
1884	chr3	170263319	170263320	rs6790988	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (0.5 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	3q26.2		rs6790988-?	NR	2E-6				Illumina [1365315]	N
1884	chr3	170272966	170272967	rs115474151	30677029	Riveros-McKay F	2019-01-24	PLoS Genet	Genetic architecture of human thinness compared to severe obesity.	Obesity (extreme)	1,456 British ancestry obese children, 6,460 European ancestry control adults	up to 7,526 British ancestry obese individuals, at least 4,405 obese individuals, up to 20,720 British ancestry controls, 61,166 controls	3q26.2	SLC7A14	rs115474151-A	0.0953028	1E-6		1.35	[1.20-1.53]	Illumina [~ 41266535] (imputed)	N
1884	chr3	170312245	170312247	rs34635471	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth without premature rupture of membranes	101 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	3q26.2	LOC101928583	rs34635471-?	NR	9E-7		2.56		Illumina [6778521] (imputed)	N
1884	chr3	170336147	170336148	rs139010077	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	3q26.2	NR	rs139010077-C	NR	4E-6		0.4322	[0.25-0.62] SD units decrease	NR [10700000] (imputed)	N
1884	chr3	170342162	170342163	rs4432643	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.2	NR	rs4432643-T	NR	6E-12		0.0244	[0.018-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1884	chr3	170371856	170371857	rs7611820	28820441	Veenstra J	2017-08-19	Nutrients	Genome-Wide Interaction Study of Omega-3 PUFAs and Other Fatty Acids on Inflammatory Biomarkers of Cardiovascular Health in the Framingham Heart Study.	Monocyte chemoattractant protein-1 (red blood cell fatty acid level interaction)	2,703 individuals	NA	3q26.2	RP11-373E16.1, CLDN11	rs7611820-?	0.072408487	5E-10	(OA)	1.3171505	[0.9-1.73] unit decrease	Affymetrix [2500000] (imputed)	N
1885	chr3	170450968	170450969	rs496104	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	3q26.2		rs496104-A	NR	2E-8		0.0858	[0.056-0.116] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
1885	chr3	170494408	170494409	rs4955755	19448619	Stolk L	2009-05-15	Nat Genet	Loci at chromosomes 13, 19 and 20 influence age at natural menopause.	Menopause (age at onset)	2,979 European ancestry female individuals	2,560 European ancestry female individuals	3q26.2	NR	rs4955755-?	NR	7E-7		0.34	[0.21-0.47] years increase	Illumina [315418]	N
1886	chr3	170527538	170527539	rs114177190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.2	NR	rs114177190-C	NR	7E-10		0.0411	[0.028-0.054] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr3	170527538	170527539	rs114177190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs114177190-C	NR	6E-13		0.0469	[0.034-0.06] unit increase	Affymetrix [9000000] (imputed)	N
1886	chr3	170527538	170527539	rs114177190	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs114177190-C	NR	7E-16		0.055	[0.042-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr3	170556718	170556719	rs56375629	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Blood glucose levels	291,107 British ancestry individuals	NA	3q26.2	CLDN11	rs56375629-A	0.0879417	2E-10		0.00836626	[0.0058-0.0109] unit decrease	Affymetrix [9463307] (imputed)	N
1886	chr3	170560437	170560438	rs57740581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q26.2	NR	rs57740581-G	NR	4E-10		0.0176	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
1886	chr3	170560437	170560438	rs57740581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.2	NR	rs57740581-G	NR	5E-21		0.0269	[0.021-0.033] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr3	170560437	170560438	rs57740581	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs57740581-G	NR	1E-40		0.039	[0.033-0.045] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr3	170564449	170564450	rs3924869	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.2	NR	rs3924869-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1886	chr3	170604143	170604144	rs78384457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs78384457-C	NR	2E-12		0.0629	[0.045-0.08] unit increase	Affymetrix [9000000] (imputed)	N
1886	chr3	170604143	170604144	rs78384457	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs78384457-C	NR	8E-10		0.0573	[0.039-0.076] unit decrease	Affymetrix [9000000] (imputed)	N
1886	chr3	170627908	170627909	rs6804915	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.2	NR	rs6804915-?	NR	3E-15				Affymetrix [~ 8270000] (imputed)	N
1886	chr3	170627908	170627909	rs6804915	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.2	NA	rs6804915-A	0.2926	2E-16		0.0172	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
1886	chr3	170630519	170630520	rs13073970	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q26.2		rs13073970-T	NR	5E-10		0.0499	[0.034-0.066] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
1886	chr3	170641586	170641587	rs7645142	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	3q26.2	EIF5A2	rs7645142-T	0.7623	4E-9	(East Asian)	0.0406	[0.027-0.054] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
1886	chr3	170643787	170643788	rs201018682	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q26.2	SLC2A2	rs201018682-T	0.816	1E-11		1.06	[1.04-1.08]	Affymetrix, Illumina [11800000] (imputed)	N
1887	chr3	170670278	170670279	rs16855567	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q26.2	NR	rs16855567-T	0.08	6E-9		0.0197	[0.013-0.026] unit increase	NR [NR]	N
1887	chr3	170670821	170670822	rs13059911	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q26.2		rs13059911-T	NR	2E-8		0.0117	[0.0076-0.0158] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1887	chr3	170687272	170687273	rs11925442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q26.2		rs11925442-C	NR	7E-16		0.0283	[0.021-0.035] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	4E-8		0.0365563	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-12		0.0478756	[0.035-0.061] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large HDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-10		0.0433898	[0.03-0.057] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	4E-8		0.0370831	[0.024-0.05] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	4E-9		0.0400958	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	5E-11		0.0448173	[0.031-0.058] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-10		0.0432201	[0.03-0.057] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in IDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-13		0.0499869	[0.037-0.063] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-10		0.0434871	[0.03-0.057] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very small VLDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	9E-10		0.0417156	[0.028-0.055] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895736	2E-9		0.0406748	[0.027-0.054] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very small VLDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	1E-10		0.0441781	[0.031-0.058] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very small VLDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-8		0.0385099	[0.025-0.052] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very small VLDL particles	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	5E-9		0.0399704	[0.027-0.053] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q26.2		rs576198199-T	0.895733	2E-8		0.0380272	[0.025-0.051] unit increase	NR [11722792] (imputed)	N
1887	chr3	170688195	170688195	rs576198199	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q26.2	TNIK	rs576198199-?	NR	3E-8		0.0247	[0.017-0.033] unit increase	Affymetrix [5701386] (imputed)	N
1887	chr3	170695425	170695426	rs1905505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q26.2		rs1905505-A	NR	2E-15		0.0171	[0.013-0.021] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1887	chr3	170695425	170695426	rs1905505	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q26.2	NR	rs1905505-G	0.716349	2E-17		0.0188768	[0.015-0.023] unit decrease	NR [NR]	N
1887	chr3	170705692	170705693	rs1514895	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	3q26.2	EIF5A2	rs1514895-A	0.71	3E-9		0.027	[0.019-0.035] unit decrease	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1887	chr3	170709192	170709193	rs1604038	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3q26.2	SLC2A2	rs1604038-T	0.2932	3E-16		0.0108	[0.0081-0.0135] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
1887	chr3	170709192	170709193	rs1604038	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q26.2	SLC2A2	rs1604038-T	0.2912	4E-28		0.0198	[0.016-0.023] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
1887	chr3	170712912	170712913	rs56819515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	3q26.2		rs56819515-T	0.873033	5E-10		0.0380423	[0.026-0.05] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170712912	170712913	rs56819515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large HDL	115,082 European ancestry individuals	NA	3q26.2		rs56819515-T	0.873033	4E-11		0.0390314	[0.027-0.051] unit decrease	NR [11722792] (imputed)	N
1887	chr3	170712912	170712913	rs56819515	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q26.2		rs56819515-T	0.873033	1E-8		0.0347612	[0.023-0.047] unit increase	NR [11722792] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	73,089 European ancestry women	NA	3q26.2	SLC2A2	rs11920090-T	0.867635	1E-10		0.027999	[0.019-0.037] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	3q26.2	SLC2A2	rs11920090-T	0.867635	3E-8		0.025304	[0.016-0.034] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	3q26.2	SLC2A2	rs11920090-T	0.867635	2E-18		0.026626	[0.021-0.033] unit increase	Affymetrix, Illumina [8700000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	25631608	Wessel J	2015-01-29	Nat Commun	Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.	Fasting blood glucose	50,900 European ancestry non-diabetic individuals, 9,664 African American non-diabetic individuals	NA	3q26.2	SLC2A2	rs11920090-A	0.165230247445282	5E-8		0.023512341	[0.015-0.032] unit decrease	Illumina [197481]	N
1887	chr3	170717520	170717521	rs11920090	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q26.2	SLC2A2	rs11920090-A	0.1352	8E-11		8.0E-4	[-0.00106-0.00266] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q26.2	SLC2A2	rs11920090-A	0.1366	2E-9		0.0267	[0.018-0.035] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Homeostasis model assessment of beta-cell function	36,466 European ancestry individuals	62,264 European ancestry individuals	3q26.2	SLC2A2	rs11920090-T	0.87	5E-6		0.012	[0.0022-0.0218] unit decrease (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1887	chr3	170717520	170717521	rs11920090	20081858	Dupuis J	2010-01-17	Nat Genet	New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.	Fasting blood glucose	46,186 European ancestry individuals	76,558 European ancestry individuals	3q26.2	SLC2A2	rs11920090-T	0.87	8E-13		0.02	[0.012-0.028] mmol/L increase (replication)	Affymetrix, Illumina [~ 2500000] (imputed)	N
1887	chr3	170721230	170721231	rs66733022	30388399	Ligthart S	2018-11-01	Am J Hum Genet	Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders.	C-reactive protein levels	148,164 European ancestry individuals	NA	3q26.2	SLC2A2	rs66733022-T	0.14	4E-8	(BMI-adjusted)	0.03	[0.018-0.042] unit increase	Affymetrix, Illumina, Perlegen [10019203] (imputed)	N
1887	chr3	170724091	170724091	rs3215234	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	19,247 Hispanic individuals	NA	3q26.2	SLC2A2	rs3215234-G	0.8319	5E-9		0.045	[0.03-0.06] unit increase	Affymetrix, Illumina [28177426] (imputed)	N
1887	chr3	170724882	170724883	rs8192675	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q26.2	NR	rs8192675-C	0.3167	4E-27		0.0452	[0.037-0.053] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1887	chr3	170724882	170724883	rs8192675	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q26.2	SLC2A2	rs8192675-T	0.711353	9E-15		0.0117042	[0.0087-0.0147] unit decrease	Affymetrix [12370749]	N
1887	chr3	170724882	170724883	rs8192675	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	3q26.2	SLC2A2	rs8192675-T	0.6906	1E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1887	chr3	170724882	170724883	rs8192675	28566273	Scott RA	2017-05-31	Diabetes	An Expanded Genome-Wide Association Study of Type 2 Diabetes in Europeans.	Type 2 diabetes	up to 26,676 European ancestry cases, up to 132,532 European ancestry controls	14,545 European ancestry cases, 38,994 European ancestry controls	3q26.2	NR	rs8192675-T	0.7233	1E-7		1.0526316	[1.03-1.08]	Affymetrix, Illumina [at least 11579618] (imputed)	N
1887	chr3	170724882	170724883	rs8192675	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	3q26.2	SLC2A2	rs8192675-C	0.2839	8E-11	(Non diabetics)	0.087149106	[0.061-0.113] mmol/L decrease	Illumina [24111857] (imputed)	N
1887	chr3	170724882	170724883	rs8192675	27500523	Zhou K	2016-09-01	Nat Genet	Variation in the glucose transporter gene SLC2A2 is associated with glycemic response to metformin.	Response to metformin in type 2 diabetes (HbA1c reduction)	1,372 European ancestry individuals	9,184 European ancestry individuals, 1,196 African American ancestry individuals, 627 Asian American individuals, 743 Latino individuals	3q26.2	SLC2A2, GLUT2	rs8192675-C		7E-14	(EA)	0.17	[0.13-0.21] unit increase	NR [705124]	N
1887	chr3	170725541	170725542	rs10513686	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q26.2		rs10513686-A	NR	1E-15		0.0272	[0.021-0.034] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1887	chr3	170725541	170725542	rs10513686	22001757	Chambers JC	2011-10-16	Nat Genet	Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.	Liver enzyme levels (gamma-glutamyl transferase)	Up to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals	NA	3q26.2	SLC2A2	rs10513686-A	0.14	6E-11		4.9	[4.00-5.70] % increase	Affymetrix, Illumina, Perlegen [~ 2600000] (imputed)	N
1887	chr3	170725729	170725730	rs10513687	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q26.2		rs10513687-T	NR	8E-72		0.058	[0.052-0.064] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1887	chr3	170727217	170727218	rs10513688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q26.2		rs10513688-A	NR	2E-12		0.0233	[0.017-0.03] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
1887	chr3	170727350	170727351	rs1879442	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Glycated haemoglobin HbA1c levels adjusted for BMI	23,357 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry individuals	NA	3q26.2		rs1879442-A	0.3666	2E-9		0.0609	[0.041-0.081] unit decrease	Affymetrix, Illumina [23060038] (imputed)	N
1887	chr3	170727350	170727351	rs1879442	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	52,211 European ancestry, African American or Afro-Caribbean, Hispanic or Latin American, Asian ancestry, Other ancestry, Native American ancestry individuals	NA	3q26.2		rs1879442-A	0.3784	2E-13		0.0501	[0.037-0.063] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1887	chr3	170727350	170727351	rs1879442	34951656	Downie CG	2021-12-24	Diabetologia	Multi-ethnic GWAS and fine-mapping of glycaemic traits identify novel loci in the PAGE Study.	Fasting glucose adjusted for BMI	19,745 European ancestry individuals	NA	3q26.2		rs1879442-A	0.2965	2E-7		0.0574	[0.036-0.079] unit decrease	Affymetrix, Illumina [29259056] (imputed)	N
1887	chr3	170727738	170727739	rs5402	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	3q26.2		rs5402-T	0.878412	3E-10		0.0392545	[0.027-0.051] unit increase	NR [11722792] (imputed)	N
1887	chr3	170727738	170727739	rs5402	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q26.2		rs5402-A	NR	7E-12		0.0255	[0.018-0.033] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
1887	chr3	170727738	170727739	rs5402	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q26.2	SLC2A2	rs5402-T	0.878578	6E-95		0.0161899	[0.015-0.018] unit decrease	Affymetrix [13995440] (imputed)	N
1887	chr3	170727738	170727739	rs5402	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q26.2	SLC2A2	rs5402-T	0.878591	2E-11		0.00397972	[0.0028-0.0052] unit decrease	Affymetrix [13995440] (imputed)	N
1887	chr3	170727738	170727739	rs5402	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q26.2	SLC2A2	rs5402-T	0.878353	2E-15		0.0244407	[0.018-0.03] unit decrease	Affymetrix [NR] (imputed)	N
1887	chr3	170727780	170727786	rs763620441	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Bilirubin levels	436,055 European ancestry individuals	NA	3q26.2		rs763620441-?	NR	3E-8		0.461472	[0.31-0.61] unit decrease	NR [9800000] (imputed)	N
1887	chr3	170729128	170729129	rs28720688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.2	NR	rs28720688-G	NR	1E-9		0.0203	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
1887	chr3	170729128	170729129	rs28720688	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs28720688-G	NR	6E-35		0.0418	[0.035-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
1887	chr3	170729413	170729414	rs61791106	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	3q26.2	SLC2A2	rs61791106-?		4E-10		0.0619	[0.042-0.081] unit decrease	Illumina [31500000] (imputed)	N
1887	chr3	170732598	170732599	rs7356034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q26.2		rs7356034-A	NR	4E-65		0.0393	[0.035-0.044] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1887	chr3	170732598	170732599	rs7356034	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q26.2		rs7356034-A	NR	2E-8		0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
1887	chr3	170732598	170732599	rs7356034	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q26.2	SLC2A2	rs7356034-A	0.28	2E-9		5.97	z-score increase	Affymetrix [4312306] (imputed)	N
1887	chr3	170732598	170732599	rs7356034	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q26.2	NA	rs7356034-A	0.2861	2E-15		0.0166	[0.012-0.021] unit increase	NR [~ 27400000] (imputed)	N
1887	chr3	170732598	170732599	rs7356034	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	3q26.2	SLC2A2	rs7356034-?	NR	5E-9		0.05053	[0.034-0.067] unit decrease novel	Illumina [6108953] (imputed)	N
1887	chr3	170733075	170733076	rs9873618	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glucose levels	114,870 European ancestry individuals	NA	3q26.2		rs9873618-G	0.708977	2E-26		0.0480294	[0.039-0.057] unit increase	NR [11722792] (imputed)	N
1887	chr3	170733075	170733076	rs9873618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q26.2		rs9873618-A	NR	1E-124		0.0549	[0.05-0.059] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
1887	chr3	170733075	170733076	rs9873618	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q26.2	NR	rs9873618-G	0.7094	2E-30		0.0581	[0.048-0.068] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1887	chr3	170733075	170733076	rs9873618	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q26.2	SLC2A2	rs9873618-G	0.71	5E-21		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1887	chr3	170733075	170733076	rs9873618	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Fasting plasma glucose	15,226 British ancestry non-diabetics individuals from 6863 families, 948 British ancestry diabetic individuals from 6863 families.	NA	3q26.2	SLC2A2	rs9873618-A	0.2871	1E-11		0.08893525	[0.063-0.115] mmol/L decrease	Illumina [24111857] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	3E-7		0.012	mmol/L increase	NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	5E-8		0.012	nmol/L decrease	NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	3E-8				NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	1E-9		0.01	% increase	NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Aspartate aminotransferase levels	424,778 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	3E-8		0.012	U/L increase	NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	3q26.2		rs61791109-C	0.28	2E-8		0.012	U/L increase	NR [NR] (imputed)	N
1887	chr3	170734376	170734377	rs61791109	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.2		rs61791109-?	NR	1E-16				NR [~ 8900000] (imputed)	N
1887	chr3	170734443	170734443	rs67481408	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	133,336 East Asian ancestry individuals	NA	3q26.2		rs67481408-TA	0.196596	2E-13		0.0316747	[0.023-0.04] unit decrease	Illumina [13476509] (imputed)	N
1887	chr3	170735098	170735099	rs11924032	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q26.2	NA	rs11924032-A	0.2521	3E-16		0.0151	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
1887	chr3	170735098	170735099	rs11924032	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	3q26.2	SLC2A2	rs11924032-?	NR	4E-18		0.05029	[0.039-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1887	chr3	170739662	170739663	rs11720145	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q26.2	SLC2A2	rs11720145-A	0.2337	1E-13		0.0223	[0.016-0.028] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
1887	chr3	170743141	170743141	rs3081362	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q26.2		rs3081362-ATAT	NR	9E-14		0.0151	[0.011-0.019] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
1887	chr3	170744814	170744815	rs5396	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.2	Intergenic	rs5396-T	0.7203	2E-9	(MTAG)	0.0087	[0.0058-0.0116] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1887	chr3	170748858	170748859	rs61791114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.2	NR	rs61791114-C	NR	5E-10		0.0586	[0.04-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
1887	chr3	170748858	170748859	rs61791114	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q26.2	NR	rs61791114-C	NR	1E-16		0.0795	[0.061-0.098] unit decrease	Affymetrix [9000000] (imputed)	N
1887	chr3	170750896	170750897	rs9837316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	3q26.2		rs9837316-T	0.175125	4E-9		0.0274832	[0.018-0.037] unit decrease	Illumina [13475706] (imputed)	N
1887	chr3	170756777	170756778	rs7628022	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	3q26.2	NR	rs7628022-A	0.9248	5E-6		0.2967	[0.17-0.42] unit decrease	Illumina [NR] (imputed)	N
1887	chr3	170756777	170756778	rs7628022	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (120 minutes)	553 European ancestry individuals, 1,346 individuals	NA	3q26.2	NR	rs7628022-A	0.9249	6E-6		0.2972	[0.17-0.43] unit decrease	Illumina [NR] (imputed)	N
1887	chr3	170756984	170756985	rs6785233	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	3q26.2	NR	rs6785233-T	0.920413	4E-15		0.0277941	[0.021-0.035] unit decrease	Affymetrix [15000001]	N
1887	chr3	170756984	170756985	rs6785233	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	3q26.2	MIR569	rs6785233-?	NR	3E-8		0.0264	[0.018-0.035] unit increase	Affymetrix [5701386] (imputed)	N
1887	chr3	170766415	170766416	rs35168380	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q26.2	TNIK	rs35168380-A	0.174344940236678	6E-6	(G_Collinsella_HB)	0.395251	[0.22-0.57] unit decrease	Illumina [7711310] (imputed)	N
1887	chr3	170766617	170766618	rs11925227	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q26.2	TNIK	rs11925227-A	0.183438659087805	2E-8		0.0534	[0.035-0.072] unit decrease	NR [5035015] (imputed)	N
1887	chr3	170780929	170780930	rs16855732	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	3q26.2	NR	rs16855732-?	NR	7E-7	(AA)	22.59	[20.53-24.65]	Illumina [905956]	N
1888	chr3	170823670	170823671	rs11705922	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.2	NR	rs11705922-G	NR	2E-12		0.0413	[0.03-0.053] unit increase	Affymetrix [9000000] (imputed)	N
1888	chr3	170825919	170825920	rs2291900	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q26.2	TNIK	rs2291900-A	0.292757	1E-11		0.016587237	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1888	chr3	170825919	170825920	rs2291900	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.2	NR	rs2291900-A	0.271471	3E-13				Affymetrix, Illumina [23472807] (imputed)	N
1888	chr3	170825919	170825920	rs2291900	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q26.2	NR	rs2291900-A	0.29054	1E-15		0.016877	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1888	chr3	170832831	170832832	rs999979	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q26.2		rs999979-T	NR	3E-8		0.0118	[0.0077-0.0159] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
1888	chr3	170834558	170834559	rs11920719	21347282	Lettre G	2011-02-10	PLoS Genet	Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.	LDL cholesterol	7,565 African American individuals	3,789 African American and Afro-Caribbean individuals	3q26.2	TNIK	rs11920719-A	0.77	4E-6		0.0973	[0.056-0.139] unit decrease	Affymetrix [~ 2740000] (imputed)	N
1888	chr3	170849512	170849513	rs115419280	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3q26.2	TNIK, MIR569, SLC2A2, KLF7P1	rs115419280-C	NR	1E-6	(sleep duration)	0.6266	[0.37-0.88] unit decrease	Affymetrix [7141204] (imputed)	N
1888	chr3	170859892	170859893	rs13315469	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3q26.2	TNIK	rs13315469-G	0.3442	8E-9		0.02177354	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
1888	chr3	170869566	170869567	rs547780071	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q26.2	TNIK	rs547780071-A	0.9989	6E-6		2.0559	[1.17-2.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1888	chr3	170870977	170870978	rs9810566	28334814	Zhu Z	2017-02-28	Hum Mol Genet	Genome-wide association study identifies novel susceptible loci and highlights Wnt/beta-catenin pathway in the development of adolescent idiopathic scoliosis.	Adolescent idiopathic scoliosis	up to 1,456 Han Chinese ancestry cases, up to 2,104 Han Chinese ancestry controls	up to 4,450 Han Chinese ancestry cases, up to 6,014 Han Chinese ancestry controls	3q26.2	TNIK	rs9810566-A	0.352	1E-11		1.19	1.08-1.32	Affymetrix [435183]	N
1888	chr3	170888197	170888198	rs6809184	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia (age at onset)	382 European ancestry GRN mutation carrier individuals	67 European ancestry GRN mutation carrier individuals, 143 European ancestry GRN negative individuals	3q26.2	TNIK	rs6809184-T	0.09	1E-6		5.46	unit decrease	Illumina [7033776] (imputed)	N
1888	chr3	170910441	170910442	rs6444970	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	3q26.2	TNIK	rs6444970-T	0.11	5E-8		4.8	[3.08-6.52] unit decrease	Illumina [6097251] (imputed)	N
1889	chr3	170919508	170919509	rs67616801	30920136	Stapleton CP	2019-02-27	Am J Transplant	The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.	Estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)	Up to 5,935 European ancestry individuals	NA	3q26.31	TNIK	rs67616801-A	NR	5E-6	(adjusted for clinical variables)			Illumina [up to 3803121] (imputed)	N
1889	chr3	170971290	170971291	rs2088885	19023125	Potkin SG	2008-11-20	Schizophr Bull	A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.	Brain imaging in schizophrenia (dorsolateral prefrontal cortex interaction)	46 European ancestry cases, 60 European ancestry controls, 18 cases, 14 controls	NA	3q26.31	TNIK	rs2088885-?	0.47	6E-6				Illumina [302783]	N
1889	chr3	170986410	170986411	rs6444974	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q26.31		rs6444974-A	0.41	9E-15		7.76	z score increase	Affymetrix [9061022] (imputed)	N
1889	chr3	170986410	170986411	rs6444974	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q26.31	TNIK	rs6444974-?		2E-8				NR [7428630] (imputed)	N
1889	chr3	170986410	170986411	rs6444974	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.31	NR	rs6444974-?	NR	3E-7		0.0089509	[0.0055-0.0124] unit increase	Affymetrix [805426] (imputed)	N
1889	chr3	170988344	170988345	rs902953	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q26.31	NR	rs902953-C	0.476	4E-11				NR [9056863] (imputed)	N
1889	chr3	170989250	170989251	rs2035913	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q26.31		rs2035913-T	0.41	9E-12		6.82	z score increase	Affymetrix [9061022] (imputed)	N
1889	chr3	171002869	171002870	rs13070180	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q26.31	NR	rs13070180-?		8E-11				NR [7428630] (imputed)	N
1889	chr3	171038436	171038437	rs9829436	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q26.31		rs9829436-?	NR	2E-13				NR [~ 8900000] (imputed)	N
1889	chr3	171041054	171041055	rs10513695	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q26.31		rs10513695-G	0.25	2E-11		6.72	z score increase	Affymetrix [9061022] (imputed)	N
1890	chr3	171113713	171113714	rs12635553	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.31	NA	rs12635553-A	0.486	4E-9		0.0099	[0.0066-0.0132] unit increase	NR [~ 27400000] (imputed)	N
1890	chr3	171118169	171118170	rs11923305	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.31		rs11923305-?	NR	7E-10				NR [~ 8900000] (imputed)	N
1890	chr3	171121232	171121233	rs150394119	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q26.31	NR	rs150394119-?	NR	9E-7		0.3226	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
1890	chr3	171127922	171127923	rs150007914	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Ovarian cancer	647 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q26.31	Intergenic	rs150007914-?		7E-6		2.23	[1.57-3.16]	Illumina [7645193] (imputed)	N
1890	chr3	171130792	171130793	rs10936684	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.31	NR	rs10936684-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
1890	chr3	171176049	171176050	rs1565568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q26.31	TNIK	rs1565568-A	0.19577	3E-10		0.018082576	[0.012-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1890	chr3	171178036	171178037	rs7627511	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q26.31	TNIK	rs7627511-C	0.216919	5E-9		0.016382726	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1890	chr3	171178896	171178897	rs61729860	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Cerebrospinal fluid AB1-42 levels	305 European ancestry cognitively normal individuals, 581 European ancestry mild cognitive impairment cases, 190 European ancestry Alzheimer's disease dementia cases	NA	3q26.31	TNIK, PLD1	rs61729860-C	0.05	5E-7		0.81	[0.5-1.12] unit increase	Illumina [8454933] (imputed)	N
1891	chr3	171220438	171220439	rs6788198	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels (CMS)	3,351 Finnish ancestry men	NA	3q26.31	TNIK	rs6788198-?	NR	3E-8	(LA_FA)	0.08441051	NR unit decrease	Illumina [609262]	N
1891	chr3	171220438	171220439	rs6788198	31636271	Gallois A	2019-10-21	Nat Commun	A comprehensive study of metabolite genetics reveals strong pleiotropy and heterogeneity across time and context.	Change in serum metabolite levels	3,351 Finnish ancestry men	NA	3q26.31	TNIK	rs6788198-?	NR	3E-8	(LA_FA)	0.09526217	NR unit decrease	Illumina [609262]	N
1891	chr3	171260748	171260749	rs73176142	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma exposed individuals	13,393 European ancestry cases, 10,701 European ancestry controls		3q26.31	NR	rs73176142-C	0.982012	3E-6		1.1273957	[1.08-1.18]	Affymetrix [7791636] (imputed)	N
1891	chr3	171266749	171266750	rs6778944	33766035	Wakim V	2021-03-25	BMC Med Genomics	New susceptibility alleles associated with severe coronary artery stenosis in the Lebanese population.	Severe coronary stenosis (young age of onset interaction)	1,734 Middle Eastern ancestry cases, 757 Middle Eastern ancestry controls	NA	3q26.31	intergenic	rs6778944-G	NR	7E-10				Illumina [NR]	N
1892	chr3	171316035	171316036	rs9838131	33768542	Liu Y	2021-03-26	Clin Pharmacol Ther	Class II HLA Variants Associate with Risk of Pegaspargase Hypersensitivity.	Asparaginase hypersensitivity in acute lymphoblastic leukemia	310 African ancestry individuals, 798 Native American individuals, 387 individuals	NA	3q26.31	NR	rs9838131-C	NR	6E-7		3.35	[NR]	Illumina [NR] (imputed)	N
1892	chr3	171321313	171321314	rs6781853	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q26.31	NR	rs6781853-C	0.446276	2E-16		0.015113	[0.012-0.019] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1892	chr3	171338222	171338223	rs191205035	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	3q26.31		rs191205035-?	NR	2E-9		0.302865	[0.2-0.41] unit increase	NR [9800000] (imputed)	N
1892	chr3	171338568	171338569	rs360408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q26.31	PLD1	rs360408-A	0.561404	7E-9		0.013308716	[0.0088-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
1892	chr3	171338568	171338569	rs360408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	PLD1	rs360408-A	0.561683	2E-43		0.034659438	[0.03-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
1892	chr3	171338568	171338569	rs360408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs360408-A	0.555254	1E-121				Affymetrix, Illumina [22063850] (imputed)	N
1892	chr3	171338568	171338569	rs360408	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q26.31	NR	rs360408-A	0.559547	2E-120		0.046621	[0.043-0.051] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1892	chr3	171338568	171338569	rs360408	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q26.31	PLD1	rs360408-A	NR	2E-26		0.0416334	[0.034-0.05] unit decrease	Affymetrix [16832071] (imputed)	N
1892	chr3	171338568	171338569	rs360408	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	PLD1	rs360408-A	0.5603	7E-43		0.04989784	[0.043-0.057] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1892	chr3	171343985	171343986	rs12635653	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs12635653-G	0.438977	2E-17				Affymetrix, Illumina [24246363] (imputed)	N
1892	chr3	171369775	171369776	rs4894707	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer and winter)	127 Hutterite individuals	NA	3q26.31	NR	rs4894707-?		3E-6	(genus_Akkermansia)	0.7636091	[0.45-1.07] unit increase	Affymetrix [212153]	N
1892	chr3	171380173	171380174	rs3774039	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q26.31	PLD1	rs3774039-A	0.433274	7E-10		0.013721438	[0.0094-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
1892	chr3	171380765	171380766	rs4894715	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	13,519 African American or Afro-Caribbean and African ancestry individuals	NA	3q26.31	NR	rs4894715-C	0.462728	3E-9		0.073742	[0.049-0.098] SD units increase	Affymetrix, Illumina [36660117] (imputed)	N
1892	chr3	171389388	171389389	rs9290424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs9290424-G	0.440909	2E-10				Affymetrix, Illumina [19872809] (imputed)	N
1892	chr3	171389684	171389685	rs9842562	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q26.31	NR	rs9842562-A	0.438565	3E-13		0.014512	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1892	chr3	171396182	171396183	rs2422377	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.31		rs2422377-?	NR	2E-36				NR [~ 8900000] (imputed)	N
1892	chr3	171406134	171406135	rs79540008	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Total bone mineral density x gut microbiota (genus Dialister) interaction	2,293 European ancestry individuals	NA	3q26.31		rs79540008-G	NR	3E-8		0.248	[0.16-0.34] unit increase	Affymetrix [509886] (imputed)	N
1892	chr3	171408530	171408531	rs4894495	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q26.31		rs4894495-?	NR	6E-14				NR [~ 8900000] (imputed)	N
1892	chr3	171417569	171417570	rs143845082	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	3q26.31		rs143845082-?	NR	8E-43		0.20462	[0.18-0.23] unit increase	NR [9800000] (imputed)	N
1892	chr3	171417569	171417570	rs143845082	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	3q26.31		rs143845082-?	NR	1E-11		0.0946047	[0.066-0.124] unit increase	NR [9800000] (imputed)	N
1892	chr3	171417569	171417570	rs143845082	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	PLD1	rs143845082-A	0.00463400000000003	1E-42		0.22329333	[0.19-0.26] unit increase	Affymetrix [93095623] (imputed)	N
1892	chr3	171417569	171417570	rs143845082	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q26.31	PLD1	rs143845082-A	0.005	5E-13		0.217064	[0.15-0.28] unit increase	Affymetrix [16832071] (imputed)	N
1892	chr3	171417569	171417570	rs143845082	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	PLD1	rs143845082-A	0.0045	3E-11		0.1849724	[0.13-0.24] unit increase	Affymetrix [~ 2500000] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Red cell distribution width	441,263 European ancestry individuals	NA	3q26.31		rs149535568-?	NR	1E-56		0.311021	[0.27-0.35] unit increase	NR [9800000] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Hemoglobin A1c levels	437,749 European ancestry individuals	NA	3q26.31		rs149535568-?	NR	2E-13		0.140745	[0.1-0.18] unit increase	NR [9800000] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.31	NR	rs149535568-A	NR	4E-9		0.1362	[0.091-0.182] unit increase	Affymetrix [9000000] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	PLD1	rs149535568-A	0.00263199999999997	8E-39		0.31438497	[0.27-0.36] unit increase	Affymetrix [93095623] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q26.31	PLD1	rs149535568-A	0.048	9E-15		0.269962	[0.2-0.34] unit increase	Affymetrix [16832071] (imputed)	N
1893	chr3	171442534	171442535	rs149535568	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	PLD1	rs149535568-A	0.0044	2E-15		0.2474283	[0.19-0.31] unit increase	Affymetrix [~ 2500000] (imputed)	N
1893	chr3	171472295	171472296	rs4446237	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q26.31		rs4446237-C	0.534	4E-8		0.06	[-0.08--0.04] % decrease	Affymetrix [NR] (imputed)	N
1893	chr3	171472295	171472296	rs4446237	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.31		rs4446237-?	NR	6E-12				NR [~ 8900000] (imputed)	N
1893	chr3	171508462	171508463	rs9839909	21131975	Purdue MP	2010-12-05	Nat Genet	Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.	Renal cell carcinoma	3,772 European ancestry cases, 8,505 European ancestry controls	2,198 European ancestry cases, 4,918 European ancestry controls	3q26.31	PP13439	rs9839909-?	0.66	3E-6	(dominant)	1.2	[1.11-1.32]	Illumina [586069]	N
1893	chr3	171516305	171516306	rs4894769	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.31		rs4894769-?	NR	3E-85				NR [~ 8900000] (imputed)	N
1893	chr3	171519792	171519793	rs13321742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q26.31		rs13321742-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1893	chr3	171520988	171520989	rs6787821	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	3q26.31		rs6787821-A	0.574939	1E-8		0.0242902	[0.016-0.033] unit decrease	Illumina [13466143] (imputed)	N
1893	chr3	171522583	171522584	rs2141746	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	PP13439, PLD1	rs2141746-T	0.826019	2E-37		0.04120741	[0.035-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
1893	chr3	171526177	171526178	rs9859052	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q26.31		rs9859052-T	NR	3E-12		0.017	[0.012-0.022] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1893	chr3	171528352	171528353	rs73176199	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	PLD1	rs73176199-A	0.008135	1E-17		0.110968046	[0.086-0.136] unit increase	Affymetrix [93095623] (imputed)	N
1893	chr3	171528352	171528353	rs73176199	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	PLD1	rs73176199-A	0.007	2E-9		0.1427708	[0.096-0.189] unit increase	Affymetrix [~ 2500000] (imputed)	N
1893	chr3	171529934	171529935	rs6792151	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q26.31	NR	rs6792151-G	NR	6E-10		0.0407307	[0.029-0.053] unit decrease	Affymetrix [16832071] (imputed)	N
1893	chr3	171529934	171529935	rs6792151	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	PLD1, PP13439	rs6792151-G	0.8492	5E-34		0.06101917	[0.051-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1893	chr3	171548896	171548897	rs10936702	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q26.31	NR	rs10936702-A	0.394231	8E-9		0.00519943	[0.0035-0.0069] unit increase	Affymetrix [16582909] (imputed)	N
1893	chr3	171548896	171548897	rs10936702	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q26.31	NR	rs10936702-A	0.394231	6E-6		0.00458962	[0.0027-0.0065] unit increase	Affymetrix [16582965] (imputed)	N
1893	chr3	171558343	171558344	rs6794092	21701570	Ng MC	2011-06-23	Obesity (Silver Spring)	Genome-wide association of BMI in African Americans.	Body mass index	1,715 African American individuals	3,274 African American individuals	3q26.31	PP13439, TMEM212	rs6794092-G	0.90	2E-6		0.167	[0.10-0.24] s.d. increase	Affymetrix [746626]	N
1893	chr3	171558535	171558536	rs3914272	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	3q26.31	Intergenic	rs3914272-?		5E-6		1.38	[NR]	Affymetrix [492217] (imputed)	N
1894	chr3	171580311	171580312	rs12493217	32716492	Simcoe MJ	2020-07-27	Hum Mol Genet	Genome-wide association study of corneal biomechanical properties identifies over 200 loci providing insight into the genetic aetiology of ocular diseases.	Corneal resistance factor	106,030 European ancestry individuals	9,029 European ancestry individuals	3q26.31	TMEM212	rs12493217-G	0.77	5E-66		0.14	[0.12-0.16] unit decrease	Affymetrix [12000000] (imputed)	N
1894	chr3	171580372	171580373	rs12493242	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs12493242-G	0.770164	9E-46		0.145036	[0.12-0.17] decrease	Affymetrix [11014269] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	6E-6				Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	3E-6				Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	4E-6		0.0322	[0.018-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	2E-6		0.0323	[0.019-0.046] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	4E-6		0.0309	[0.018-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171596608	171596609	rs11914354	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	3q26.31	TMEM212	rs11914354-A	0.2333	1E-5		0.0304	[0.017-0.044] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1894	chr3	171619515	171619516	rs3850195	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.31	TMEM212-AS1	rs3850195-A	0.7471	3E-14		0.1131	[0.082-0.145] unit increase	Affymetrix [~ 11900000] (imputed)	N
1894	chr3	171620324	171620325	rs62281905	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs62281905-A	0.87909	8E-10		0.0828032	[0.055-0.11] decrease	Affymetrix [11014269] (imputed)	N
1894	chr3	171622865	171622866	rs7616692	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q26.31	NR	rs7616692-?	NR	3E-6		0.280461	[0.16-0.4] unit increase	NR [13958389] (imputed)	N
1894	chr3	171623411	171623412	rs9870071	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9870071-G	0.74877	6E-33		0.120573	[0.1-0.141] increase	Affymetrix [11014269] (imputed)	N
1894	chr3	171646041	171646042	rs9832169	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.31	TMEM212-AS1, FNDC3B	rs9832169-G	0.7667	7E-14		0.1149	[0.083-0.147] unit increase	Affymetrix [~ 11900000] (imputed)	N
1894	chr3	171653902	171653903	rs3913363	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	3q26.31	TMEM212	rs3913363-T	NR	4E-7	(AA)	1.3	[0.75-1.85] unit increase	Affymetrix [~ 2300000] (imputed)	N
1894	chr3	171681936	171681937	rs76628830	29703947	Jawinski P	2018-04-27	Mol Psychiatry	Human brain arousal in the resting state: a genome-wide association study.	Resting-state electroencephalogram vigilance	1,877 European ancestry individuals	NA	3q26.31	TMEM212	rs76628830-T	0.895	2E-6	(Slope index)	0.2242	[0.13-0.32] unit increase	Affymetrix [8042262] (imputed)	N
1894	chr3	171685581	171685582	rs9814607	25644384	Davies G	2015-02-03	Mol Psychiatry	Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53949).	Cognitive function	51,719 European ancestry individuals, 1,473 Erasmus Rucphen (founder/genetic isolate) individuals, 327 Korculan (founder/genetic isolate) individuals, 430 Orcadian (founder/genetic isolate) individuals	NA	3q26.31	intergenic	rs9814607-?	NR	9E-6		0.0413	[0.023-0.060] unit increase	Affymetrix, Illumina [2478500] (imputed)	N
1895	chr3	171734970	171734971	rs73037143	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe autoimmune type 2 diabetes	452 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	3q26.31	TNK	rs73037143-A	0.155689	6E-6		1.548	[1.28 - 1.872]	Illumina [5396854] (imputed)	N
1895	chr3	171759410	171759410	rs11386443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q26.31	FNDC3B	rs11386443-CT	NR	3E-10		0.0180559	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
1895	chr3	171759410	171759410	rs11386443	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q26.31	FNDC3B	rs11386443-CT	NR	6E-10		0.0178178	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
1895	chr3	171768717	171768718	rs79238110	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.31	NR	rs79238110-T	NR	2E-11		0.0239	[0.017-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1895	chr3	171771753	171771754	rs11718418	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.31		rs11718418-?	NR	8E-14				NR [~ 8900000] (imputed)	N
1895	chr3	171774011	171774012	rs35461662	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q26.31	FNDC3B	rs35461662-A	NR	3E-17		0.0328056	[0.025-0.041] unit increase	Affymetrix [16832071] (imputed)	N
1895	chr3	171775450	171775451	rs16856838	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3q26.31		rs16856838-A	NR	5E-10		0.0126	[0.0087-0.0165] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1895	chr3	171775450	171775451	rs16856838	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs16856838-A	0.536649	5E-12				Affymetrix, Illumina [20825802] (imputed)	N
1895	chr3	171777645	171777646	rs6763687	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.31	FNDC3B	rs6763687-T	0.5825	2E-21		0.03430676	[0.027-0.041] unit increase	Affymetrix [~ 2500000] (imputed)	N
1895	chr3	171781534	171781535	rs8179884	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.31	FNDC3B	rs8179884-G	0.627856	6E-10		0.0141136935	[0.0096-0.0186] unit decrease	Affymetrix [93095623] (imputed)	N
1895	chr3	171783545	171783546	rs4894797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q26.31		rs4894797-A	NR	2E-11		0.0134	[0.0095-0.0173] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1895	chr3	171783545	171783546	rs4894797	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q26.31		rs4894797-A	NR	5E-35		0.0253	[0.021-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
1895	chr3	171783545	171783546	rs4894797	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q26.31	NR	rs4894797-A	0.574849	1E-10		0.01253	[0.0087-0.0163] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1895	chr3	171783545	171783546	rs4894797	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.31	FNDC3B	rs4894797-?	NR	6E-11		0.019177997	[0.013-0.025] unit increase	Illumina [27896057] (imputed)	N
1895	chr3	171783545	171783546	rs4894797	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.31		rs4894797-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1895	chr3	171784735	171784736	rs16856859	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs16856859-G	0.544329	5E-16				Affymetrix, Illumina [21126107] (imputed)	N
1895	chr3	171784735	171784736	rs16856859	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.31		rs16856859-?	NR	8E-54				NR [~ 8900000] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy (MTAG)	1,733 European ancestry cases, 6,628 European ancestry controls	NA	3q26.31	FNDC3B	rs9647379-C	0.4201	1E-8		1.220548	1.12-1.33	Illumina [6530233] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	33495596	Tadros R	2021-01-25	Nat Genet	Shared genetic pathways contribute to risk of hypertrophic and dilated cardiomyopathies with opposite directions of effect.	Hypertrophic cardiomyopathy	1,733 European ancestry cases, 6,628 European ancestry controls	2,694 European ancestry cases, 47,486 European ancestry controls	3q26.31	FNDC3B	rs9647379-C	0.4201	8E-11		1.1984508	1.13-1.27	Illumina [6530233] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q26.31	FNDC3B	rs9647379-C	0.4111	3E-21		0.018	[0.014-0.022] unit increase	Affymetrix [18391927] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q26.31	NR	rs9647379-C	0.411487	2E-9		0.0416189	[0.028-0.055] unit increase	Affymetrix [17914406] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q26.31		rs9647379-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q26.31	NR	rs9647379-G	0.59	3E-14		0.014	[0.01-0.018] unit increase	Affymetrix [2446094] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q26.31	NR	rs9647379-G	0.59	5E-8				Affymetrix [2446094] (imputed)	N
1895	chr3	171785167	171785168	rs9647379	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3q26.31	FNDC3B	rs9647379-C	0.4	1E-9		0.206	[0.11-0.30] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1895	chr3	171795539	171795540	rs4894799	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.31	NR	rs4894799-A	NR	4E-26		0.0266	[0.022-0.031] unit increase	Affymetrix [9000000] (imputed)	N
1895	chr3	171795539	171795540	rs4894799	28898252	Wheeler E	2017-09-12	PLoS Med	Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis.	Glycated hemoglobin levels	88,355 European ancestry individuals	NA	3q26.31	FNDC3B	rs4894799-A	0.6214	2E-6		0.0089	[0.0052-0.0126] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1895	chr3	171798693	171798694	rs13089972	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3q26.31	FNDC3B	rs13089972-A	0.5775	2E-15		0.0111	[0.0084-0.0138] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
1895	chr3	171798693	171798694	rs13089972	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q26.31	FNDC3B	rs13089972-A	0.583712	7E-16		0.018387172	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1895	chr3	171799144	171799144	rs397778518	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3q26.31	FNDC3B	rs397778518-CT	0.5832	5E-10		0.02259686	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy (sarcomere negative)	170 African ancestry cases, 93 Hispanic/Latino cases, 52 East Asian ancestry cases, 1,444 European ancestry cases, 94 South Asian ancestry cases, 21 cases, 738 African ancestry controls, 78 Hispanic/Latino controls, 212 East Asian ancestry controls, 24,161 European ancestry controls, 1,132 South Asian ancestry controls, 1,023 controls	NA	3q26.31	FNDC3B	rs4894803-A	0.595845	2E-7		0.221609	[0.14-0.3] unit decrease	Affymetrix [8590397] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	33495597	Harper AR	2021-01-25	Nat Genet	Common genetic variants and modifiable risk factors underpin hypertrophic cardiomyopathy susceptibility and expressivity.	Hypertrophic cardiomyopathy	233 African ancestry cases, 122 Hispanic/Latino cases, 70 East Asian ancestry cases, 2,196 European ancestry cases, 138 South Asian ancestry cases, 21 cases, 1,331 African ancestry controls, 170 Hispanic/Latino controls, 333 East Asian ancestry controls, 42,902 European ancestry controls, 1,727 South Asian ancestry controls, 1,023 controls	1,643 European or unknown ancestry cases, 6,628 European or unknown ancestry controls	3q26.31	FNDC3B	rs4894803-A	0.597	4E-7		0.179	[0.11-0.25] unit decrease	Affymetrix [8590397] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q26.31	FNDC3B	rs4894803-A	0.605531	8E-11	(10 ms)	0.0366221	[0.025-0.048] unit increase	Affymetrix [10000000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q26.31	FNDC3B	rs4894803-A	0.605531	8E-10	(8 ms)	0.0351706	[0.024-0.046] unit increase	Affymetrix [10000000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q26.31	FNDC3B	rs4894803-G	0.39	2E-13		0.49	[0.35-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q26.31	FNDC3B	rs4894803-G	0.3931	6E-13		0.4937	[0.36-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q26.31	NR	rs4894803-?	NR	4E-13				Affymetrix [~ 8270000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q26.31	NR	rs4894803-A	0.6003	6E-16		0.0149	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q26.31	NA	rs4894803-A	0.6004	4E-16		0.0149	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q26.31	NR	rs4894803-A	0.6004	4E-16		0.0149	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
1895	chr3	171800255	171800256	rs4894803	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q26.31	FNDC3B	rs4894803-A	0.611	2E-6		0.031	[0.017-0.045] unit decrease	Affymetrix [7947838] (imputed)	N
1895	chr3	171800497	171800498	rs16856911	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	3q26.31	FNDC3B	rs16856911-?	NR	3E-9		0.1713	[0.11-0.23] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1895	chr3	171809304	171809307	rs148967108	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	3q26.31		rs148967108-T	0.337969535	9E-9		0.11786993	[0.078-0.158] unit increase	Illumina [13429980] (imputed)	N
1895	chr3	171814020	171814021	rs7636026	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q26.31		rs7636026-?	NR	2E-17				NR [~ 8900000] (imputed)	N
1895	chr3	171814451	171814451	rs11409477	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	FNDC3B	rs11409477-GC	0.572812	5E-51		0.033752866	[0.029-0.038] unit increase	Affymetrix [93095623] (imputed)	N
1895	chr3	171820210	171820211	rs62283809	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	3q26.31		rs62283809-G	NR	2E-12		0.1323	[0.095-0.169] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
1895	chr3	171820210	171820211	rs62283809	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls	NA	3q26.31	FNDC3B	rs62283809-T	NR	4E-6		0.896282	[0.85-0.94]	Illumina [11610548] (imputed)	N
1895	chr3	171820889	171820890	rs62283811	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	3q26.31	FNDC3B	rs62283811-T	NR	1E-9		1.18046	[1.13-1.23]	Illumina [NR] (imputed)	N
1895	chr3	171821512	171821513	rs7651931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q26.31	NR	rs7651931-A	0.624834	5E-11		0.013721	[0.0096-0.0178] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1895	chr3	171821555	171821556	rs62283814	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q26.31	FNDC3B	rs62283814-C	0.946	1E-10		0.182	[0.13-0.24] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1895	chr3	171831115	171831116	rs4308305	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3q26.31		rs4308305-C	0.323057706	2E-9		0.112641335	[0.076-0.149] unit increase	Illumina [13429686] (imputed)	N
1895	chr3	171831115	171831116	rs4308305	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Glaucoma	5,761 Japanese ancestry cases, 206,692 Japanese ancestry controls	NA	3q26.31		rs4308305-C	0.284330898	4E-9		1.1490949	[1.097044784-1.203614688]	Illumina [8919992] (imputed)	N
1895	chr3	171832534	171832535	rs57552558	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	3q26.31	FNDC3B	rs57552558-T	NR	1E-11		1.20394	[1.15-1.26]	Illumina [NR] (imputed)	N
1895	chr3	171833265	171833266	rs4894808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q26.31		rs4894808-G	0.6	3E-13				NR [NR] (imputed)	N
1895	chr3	171833265	171833266	rs4894808	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q26.31		rs4894808-G	0.6	8E-12		0.01	% increase	NR [NR] (imputed)	N
1896	chr3	171897974	171897975	rs4894525	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs4894525-C	0.873054	2E-19		0.122952	[0.096-0.15] increase	Affymetrix [11014269] (imputed)	N
1896	chr3	171910641	171910642	rs6445042	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs6445042-A	NR	3E-9		0.0192978	[0.013-0.026] unit increase	Affymetrix [323123] (imputed)	N
1896	chr3	171921568	171921569	rs9854411	26121980	Chauhan L	2015-06-30	BMC Genomics	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.	Triptolide cytotoxicity	55 European ancestry lymphoblastoid cell lines	NA	3q26.31	FNDC3B	rs9854411-?	NR	7E-6		0.57	unit decrease	Affymetrix, Illumina, Perlegen [at least 1978803] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5234	5E-11		0.0239	[0.017-0.031] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5234	2E-7	(men)	0.0281	[0.018-0.039] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5234	1E-7	(women)	0.0288	[0.018-0.04] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.512	2E-7	(EA, men)	0.0294	[0.018-0.041] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for body mass index	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.512	1E-10	(EA)	0.0243	[0.017-0.032] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5326	4E-8	(women)	0.0339	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5234	1E-9		0.0254	[0.017-0.034] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5187999999999999	2E-8	(men)	0.0337	[0.022-0.046] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.5135000000000001	3E-8	(EA, men)	0.0347	[0.023-0.047] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI in active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,139 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,100 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q26.31	FNDC3B	rs12493901-G	0.512	2E-9	(EA)	0.0261	[0.018-0.035] cm increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-?	0.5234	2E-10				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-?	0.5234	1E-7	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-?	0.5234	1E-7	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-?	0.512	3E-10	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Waist circumference adjusted for BMI (joint analysis main effects and physical activity interaction)	2,518 African American women, 85,730 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 54,792 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q26.31	FNDC3B	rs12493901-?	0.512	1E-7	(EA, men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	9E-6	(men)	0.0464	[0.026-0.067] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	7E-8		0.0399	[0.025-0.054] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	2E-7		0.0203	[0.013-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	6E-9	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	6E-13				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	3E-8	(men)	0.0275	[0.018-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	3E-6	(women)	0.0214	[0.012-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.31	FNDC3B	rs12493901-A	0.4712	1E-11		0.0239	[0.017-0.031] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q26.31	FNDC3B	rs12493901-A	0.4845	8E-10	(EA)	0.0209	[0.014-0.028] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1896	chr3	171922054	171922055	rs12493901	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q26.31	FNDC3B	rs12493901-A	0.4845	5E-9	(EA, men)	0.0279	[0.018-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1896	chr3	171924884	171924885	rs368064533	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q26.31	FNDC3B	rs368064533-C	NR	9E-9		0.016532	[0.011-0.022] unit decrease	Affymetrix [321114] (imputed)	N
1896	chr3	171926372	171926373	rs4535251	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q26.31	NR	rs4535251-?	NR	7E-6		0.0267796	[0.015-0.038] unit decrease	Illumina [34656550] (imputed)	N
1896	chr3	171926372	171926373	rs4535251	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q26.31	FNDC3B	rs4535251-T	0.5	4E-16		1.18	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1896	chr3	171926690	171926691	rs12492846	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	3q26.31	FNDC3B	rs12492846-?	NR	1E-8		0.1027	[0.068-0.138] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
1896	chr3	171926690	171926691	rs12492846	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q26.31	FNDC3B	rs12492846-C	0.147	7E-10		0.111	[0.076-0.146] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1896	chr3	171930380	171930381	rs4380442	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.31	FNDC3B	rs4380442-G	0.0986	1E-28		0.262	[0.22-0.31] unit decrease	Affymetrix [~ 11900000] (imputed)	N
1896	chr3	171933068	171933069	rs12629746	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q26.31	FNDC3B	rs12629746-A	NR	2E-10		0.0179823	[0.012-0.024] unit decrease	Affymetrix [321016] (imputed)	N
1896	chr3	171933068	171933069	rs12629746	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q26.31	NR	rs12629746-?	NR	2E-22				Affymetrix [~ 8270000] (imputed)	N
1896	chr3	171933251	171933252	rs6445046	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Intraocular pressure (Goldman correlated)	6,125 Icelandic ancestry individuals	NA	3q26.31	FNDC3B	rs6445046-?	NR	8E-6		0.1	unit decrease	Illumina [NR]	N
1896	chr3	171933251	171933252	rs6445046	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal resistance factor	6,125 Icelandic ancestry individuals	NA	3q26.31	FNDC3B	rs6445046-?	NR	2E-10		0.14	unit decrease	Illumina [NR]	N
1896	chr3	171933251	171933252	rs6445046	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Corneal hysteresis	6,125 Icelandic ancestry individuals	NA	3q26.31	FNDC3B	rs6445046-?	NR	2E-7		0.12	unit decrease	Illumina [NR]	N
1896	chr3	171933251	171933252	rs6445046	30894546	Ivarsdottir EV	2019-03-20	Nat Commun	Sequence variation at ANAPC1 accounts for 24% of the variability in corneal endothelial cell density.	Central corneal thickness	6,125 Icelandic ancestry individuals	1,459 Icelandic ancestry individuals	3q26.31	FNDC3B	rs6445046-?	NR	6E-6		0.104	[0.14-0.06] unit decrease	Illumina [NR]	N
1896	chr3	171933251	171933252	rs6445046	29760442	Iglesias AI	2018-05-14	Nat Commun	Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases.	Central corneal thickness	17,803 European ancestry individuals, 8,107 Asian ancestry individuals	NA	3q26.31	FNDC3B	rs6445046-T	0.73	2E-20		3.49	[2.76-4.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1896	chr3	171943510	171943511	rs4423796	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q26.31		rs4423796-T	0.339118	2E-34		0.0263994	[0.022-0.031] unit increase	Illumina [13479295] (imputed)	N
1896	chr3	171947434	171947435	rs4428215	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Oxalobacter id.2978)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3q26.31		rs4428215-G	NR	8E-8		5.3785048	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1896	chr3	171947434	171947435	rs4428215	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (family Oxalobacteraceae id.2966)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	3q26.31		rs4428215-G	NR	5E-8		5.455653	z score increase	Affymetrix, Illumina [NR] (imputed)	N
1896	chr3	171950400	171950401	rs146690225	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	3q26.31	NR	rs146690225-?	NR	1E-8				Illumina [7760689] (imputed)	N
1896	chr3	171959683	171959684	rs4894529	29808027	Tedja MS	2018-05-28	Nat Genet	Genome-wide association meta-analysis highlights light-induced signaling as a driver for refractive error.	Spherical equivalent or myopia (age of diagnosis)	145,366 European ancestry individuals, 2,610 Erasmus Rucphen (founder/genetic isolate) individuals, 509  Talana (founder/genetic isolate) individuals, 15,044 East Asian ancestry individuals, 2,275 Malay ancestry individuals, 2,110 Indian ancestry individuals,  2,506 Asian ancestry individuals	NA	3q26.31	FNDC3B	rs4894529-A	0.4833	2E-8		5.646	[NR] z score increase	Affymetrix, Illumina [~ 11000000] (imputed)	N
1896	chr3	171961458	171961459	rs35417004	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q26.31	FNDC3B	rs35417004-T	0.0978	3E-6		0.0538	[0.031-0.077] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1896	chr3	171965789	171965790	rs11719016	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs11719016-G	0.750798	2E-20		0.0936925	[0.073-0.114] decrease	Affymetrix [11014269] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q26.31		rs7652177-G	NR	5E-92		0.0264	[0.024-0.029] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs7652177-C	NR	2E-16		0.0252483	[0.019-0.031] unit decrease	Affymetrix [321114] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs7652177-C	NR	7E-14		0.0228929	[0.017-0.029] unit decrease	Affymetrix [323123] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3q26.31	FNDC3B	rs7652177-G	0.856	2E-8	(AA)	0.054	[0.034-0.074] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	3q26.31	FNDC3B	rs7652177-G		6E-44				Affymetrix, Illumina [17972582] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q26.31	NR	rs7652177-?	NR	6E-8		0.03381554	[0.022-0.046] unit increase	Illumina [34656550] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.31		rs7652177-?	NR	5E-110				NR [~ 8900000] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q26.31	FNDC3B	rs7652177-C	0.49	3E-39		0.038	[0.032-0.044] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1897	chr3	171969076	171969077	rs7652177	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q26.31	GHSR	rs7652177-?	NR	7E-11	(Conditioned on rs572169)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
1897	chr3	171970309	171970310	rs62281815	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q26.31	FNDC3B	rs62281815-A	0.4716	1E-13		0.0501	[0.037-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1897	chr3	171970858	171970859	rs4243400	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	3q26.31	NR	rs4243400-?	NR	1E-7		0.03268106	[0.021-0.045] unit increase	Illumina [34656550] (imputed)	N
1897	chr3	171970858	171970859	rs4243400	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q26.31	FNDC3B	rs4243400-A	0.5129	3E-12	(EA)	0.0249	[0.018-0.032] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1897	chr3	171970858	171970859	rs4243400	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q26.31	FNDC3B	rs4243400-A	0.5129	1E-9	(EA, women)	0.0276	[0.019-0.037] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
1897	chr3	171970858	171970859	rs4243400	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3q26.31	FNDC3B	rs4243400-A	0.52	2E-23		0.048	[0.036-0.06] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
1897	chr3	171972662	171972663	rs12637941	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	GHSR	rs12637941-?	NR	5E-6	(glucuronate)	0.32638332	[0.19-0.47] unit increase	Affymetrix [at least 2500000] (imputed)	N
1897	chr3	171973786	171973787	rs13094143	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	3q26.31	NR	rs13094143-C	NR	6E-6		0.1085	[0.061-0.156] SD units decrease	NR [10700000] (imputed)	N
1897	chr3	171974911	171974912	rs4894532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs4894532-T	NR	1E-9		0.0195366	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1897	chr3	171974911	171974912	rs4894532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs4894532-T	NR	2E-8		0.0180451	[0.012-0.024] unit increase	Affymetrix [323123] (imputed)	N
1897	chr3	171974911	171974912	rs4894532	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q26.31	FNDC3B	rs4894532-T	0.3648	2E-45		0.0278	[0.024-0.032] unit increase	Affymetrix [18391927] (imputed)	N
1897	chr3	171974911	171974912	rs4894532	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q26.31	NR	rs4894532-T	0.365025	4E-8		0.03761	[0.024-0.051] unit increase	Affymetrix [17914406] (imputed)	N
1897	chr3	171984110	171984111	rs114013538	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs114013538-C	0.983117	5E-9		0.21216	[0.14-0.28] increase	Affymetrix [11014269] (imputed)	N
1897	chr3	171984404	171984405	rs9290448	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs9290448-T	0.84373	1E-17		0.0988526	[0.074-0.123] increase	Affymetrix [11014269] (imputed)	N
1897	chr3	171985303	171985304	rs16845236	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3q26.31		rs16845236-T	NR	3E-14		0.1103	[0.082-0.139] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals	3q26.31		rs7635832-T	0.810582	3E-89		0.226006	[0.2-0.25] increase	Affymetrix [11014269] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	3q26.31	FNDC3B	rs7635832-G	0.198	2E-10		0.214	[0.15-0.28] mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	3q26.31	FNDC3B	rs7635832-G	0.188	4E-11		3.296	[2.32-4.27] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q26.31	FNDC3B	rs7635832-T	0.8112	5E-50		0.2614	[0.23-0.3] unit increase	Affymetrix [~ 11900000] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	3q26.31	FNDC3B	rs7635832-?	NR	9E-48		0.23	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	3q26.31	FNDC3B	rs7635832-G	NR	7E-13		0.22	[0.16-0.28] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1897	chr3	171989275	171989276	rs7635832	28073927	Springelkamp H	2017-01-10	Hum Mol Genet	New insights into the genetics of primary open-angle glaucoma based on meta-analyses of intraocular pressure and optic disc characteristics.	Intraocular pressure	25,916 European ancestry individuals, 1,073 Orcadian (founder/genetic isolate) individuals, 2,589 Erasmus Rucphen (founder/genetic isolate) individuals	8,352 Asian ancestry individuals	3q26.31	FNDC3B	rs7635832-G	NR	3E-12	(EA)	0.25	[0.17-0.33] unit decrease	Affymetrix, Illumina [~ 8000000] (imputed)	N
1897	chr3	171989276	171989279	rs199771582	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q26.31	FNDC3B	rs199771582-?		2E-14				Affymetrix, Illumina [NR] (imputed)	N
1897	chr3	171992008	171992009	rs6445054	31246245	Khawaja AP	2019-06-27	JAMA Ophthalmol	Genetic Variants Associated With Corneal Biomechanical Properties and Potentially Conferring Susceptibility to Keratoconus in a Genome-Wide Association Study.	Corneal resistance factor	6,645 individuals	2,384 European ancestry individuals	3q26.31	FNDC3B	rs6445054-T	0.823	1E-8		0.19	[0.13-0.26] mm Hg increase	Affymetrix [NR] (imputed)	N
1897	chr3	171992316	171992317	rs74705916	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs74705916-TG	NR	8E-9		0.0196912	[0.013-0.026] unit increase	Affymetrix [321114] (imputed)	N
1897	chr3	171992386	171992387	rs6445055	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	3q26.31	FNDC3B	rs6445055-?	NR	2E-32		0.23	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
1897	chr3	171992386	171992387	rs6445055	25173106	Hysi PG	2014-08-31	Nat Genet	Genome-wide analysis of multi-ancestry cohorts identifies new loci influencing intraocular pressure and susceptibility to glaucoma.	Intraocular pressure	7,738 Asian ancestry individuals, 27,558 European ancestry individuals	NA	3q26.31	FNDC3B	rs6445055-A	NR	4E-8		0.177	[0.12-0.24] mm Hg decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1897	chr3	171995604	171995605	rs4894535	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	3q26.31	FNDC3B	rs4894535-C	0.8402000000000001	5E-11		0.1848	[0.13-0.24] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1897	chr3	171995604	171995605	rs4894535	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	3q26.31	FNDC3B	rs4894535-T	0.17	5E-12		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1897	chr3	171997498	171997499	rs4894414	33649486	Hardcastle AJ	2021-03-01	Commun Biol	A multi-ethnic genome-wide association study implicates collagen matrix integrity and cell differentiation pathways in keratoconus.	Keratoconus	2,116 European ancestry cases, 24,626 European ancestry controls	1, 389 European ancestry cases, 79,727 European ancestry controls, 759 South Asian ancestry cases, 8,009 South Asian ancestry controls, 405 African ancestry cases, 4,185 African ancestry controls	3q26.31	FNDC3B, TMEM212	rs4894414-T	NR	1E-26		0.304	[0.25-0.36] unit increase	Affymetrix [7701190] (imputed)	N
1897	chr3	171999282	171999283	rs4894539	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.31	FNDC3B	rs4894539-?	NR	4E-44		0.040859073	[0.035-0.047] unit increase	Illumina [27896057] (imputed)	N
1897	chr3	172022841	172022842	rs17521583	33311554	Jiang X	2020-12-11	Commun Biol	Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants.	Corneal resistance factor	76,029 white-British ancestry individuals	10,130 non white-British ancestry individuals			rs17521583-A	0.781484	5E-12		0.0754946	[0.054-0.097] increase	Affymetrix [11014269] (imputed)	N
1897	chr3	172046860	172046861	rs2270568	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	3q26.31	FNDC3B	rs2270568-C	0.4228	6E-6		1.10032	NR	Affymetrix, Illumina [30341632] (imputed)	N
1897	chr3	172068241	172068242	rs181124723	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q26.31	NR	rs181124723-G		4E-17		0.3815	[0.29-0.47] SD units decrease	NR [10700000] (imputed)	N
1897	chr3	172074838	172074839	rs115101606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q26.31	NR	rs115101606-A	NR	1E-10		0.0324	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
1897	chr3	172081358	172081359	rs12152414	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q26.31	NR	rs12152414-A	0.036	5E-6	(EA)	0.083	[0.048-0.118] unit increase	Illumina [~ 11800000] (imputed)	N
1897	chr3	172089252	172089253	rs553685	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3q26.31	Intergenic	rs553685-?	NR	1E-6		2.2507315	[NR]	Affymetrix [492217] (imputed)	N
1897	chr3	172090835	172090836	rs6804518	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q26.31	FNDC3B	rs6804518-A	0.0703	5E-6		0.0816	[0.047-0.116] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1898	chr3	172115901	172115902	rs12897	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	3q26.31	FNDC3B	rs12897-?	NR	4E-8		0.0287142	[0.018-0.039] unit decrease	Illumina [4804024] (imputed)	N
1898	chr3	172115901	172115902	rs12897	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	up to 122,733 cases, up to 424,528 controls	NA	3q26.31	FNDC3B	rs12897-A	0.5914	1E-9		0.0358	[0.024-0.047] unit decrease	Affymetrix [at least 7947838] (imputed)	N
1898	chr3	172115901	172115902	rs12897	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	3q26.31	FNDC3B	rs12897-A	0.5863	2E-10		0.042	[0.029-0.055] unit decrease	NR [8041861] (imputed)	N
1898	chr3	172119131	172119132	rs35263143	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	3q26.31	FNDC3B	rs35263143-T	0.417808	5E-7		1.04	[1.03-1.06]	NR [8126035] (imputed)	N
1898	chr3	172121442	172121443	rs582780	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs582780-G	NR	3E-9		0.0185422	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1898	chr3	172125671	172125672	rs16845465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q26.31	NR	rs16845465-A	NR	9E-17		0.0472	[0.036-0.058] unit decrease	Affymetrix [9000000] (imputed)	N
1898	chr3	172126420	172126421	rs6773621	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	FNDC3B	rs6773621-A	NR	2E-9		0.0184859	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1898	chr3	172126475	172126476	rs9849338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q26.31		rs9849338-?	NR	1E-10				NR [~ 8900000] (imputed)	N
1898	chr3	172126617	172126618	rs6801381	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q26.31	FNDC3B	rs6801381-T	0.4631	4E-7		0.0338	[0.021-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1898	chr3	172127776	172127777	rs583269	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	3q26.31		rs583269-T	NR	1E-8		0.018646475	[0.012-0.025] years increase	NR [7400000] (imputed)	N
1898	chr3	172135333	172135334	rs7623981	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	BZW1P1	rs7623981-C	NR	3E-8		0.0172311	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
1898	chr3	172137342	172137343	rs485554	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	3q26.31		rs485554-C	NR	1E-7		0.0119	[0.0076-0.0162] mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1898	chr3	172137342	172137343	rs485554	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	3q26.31		rs485554-C	0.32	2E-27		0.012	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1898	chr3	172137342	172137343	rs485554	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	3q26.31		rs485554-C	0.31	2E-8		0.015	mm decrease	Affymetrix, Illumina [8936601] (imputed)	N
1898	chr3	172147238	172147239	rs59194935	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q26.31	NR	rs59194935-A	0.432021	4E-11		0.0200183	[0.014-0.026] unit increase	Affymetrix [16577313] (imputed)	N
1898	chr3	172150835	172150836	rs4894419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q26.31		rs4894419-G	NR	5E-16		0.0141	[0.011-0.017] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1898	chr3	172154209	172154210	rs56271032	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q26.31	NR	rs56271032-G	0.13121899999999997	4E-9		0.0110385	[0.0073-0.0148] unit increase	Affymetrix [16578495] (imputed)	N
1898	chr3	172155584	172155585	rs555554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	GHSR	rs555554-T	NR	3E-8		0.0181044	[0.012-0.025] unit increase	Affymetrix [323123] (imputed)	N
1898	chr3	172158396	172158397	rs1403637	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q26.31		rs1403637-C	NR	9E-10		0.0127	[0.0086-0.0168] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1898	chr3	172160400	172160401	rs13085429	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q26.31		rs13085429-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1898	chr3	172162382	172162382	rs750510622	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q26.31	GHSR	rs750510622-T	0.3139	9E-64		0.0343	[0.03-0.038] unit increase	Affymetrix [18391927] (imputed)	N
1898	chr3	172162382	172162382	rs750510622	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q26.31	NR	rs750510622-T	0.314246	4E-12		0.049813	[0.035-0.064] unit increase	Affymetrix [17914406] (imputed)	N
1898	chr3	172162828	172162829	rs482204	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.31	GHSR	rs482204-A	0.7433	1E-10		0.0125335	[0.0087-0.0163] unit decrease	Affymetrix [11880941] (imputed)	N
1898	chr3	172163448	172163449	rs509035	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q26.31	NR	rs509035-?	NR	5E-9	(female)	0.15106	[0.1-0.2] unit increase	Affymetrix [7794483] (imputed)	N
1898	chr3	172163448	172163449	rs509035	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q26.31	NR	rs509035-?	NR	2E-15		0.18849	[0.14-0.23] unit increase	Affymetrix [7794483] (imputed)	N
1898	chr3	172163448	172163449	rs509035	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q26.31	NR	rs509035-?	NR	1E-8	(male)	0.2139	[0.14-0.29] unit increase	Affymetrix [7794483] (imputed)	N
1898	chr3	172163448	172163449	rs509035	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q26.31	GHSR	rs509035-A	0.316	3E-23		0.031	[0.025-0.037] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
1898	chr3	172164989	172164990	rs6774762	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q26.31		rs6774762-G	0.248881	1E-9		0.0190497	[0.013-0.025] unit decrease	Illumina [13479924] (imputed)	N
1898	chr3	172164989	172164990	rs6774762	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q26.31	GHSR	rs6774762-?	NR	2E-24		0.03362165	[0.027-0.04] unit decrease	Illumina [27896057] (imputed)	N
1898	chr3	172165413	172165414	rs762351324	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Insulin-like growth factor 1 levels	435,516 European ancestry individuals	NA	3q26.31		rs762351324-?	NR	9E-12		0.514681	[0.36-0.67] unit decrease	NR [9800000] (imputed)	N
1898	chr3	172165726	172165727	rs572169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.31		rs572169-?	NR	2E-80				NR [~ 8900000] (imputed)	N
1898	chr3	172165726	172165727	rs572169	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	3q26.31	GHSR	rs572169-T	0.46	1E-7		0.036	[0.024-0.048] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
1898	chr3	172165726	172165727	rs572169	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	3q26.31	GHSR	rs572169-T	0.31	1E-12		1.17	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
1898	chr3	172165726	172165727	rs572169	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q26.31	GHSR	rs572169-T	0.31	3E-18		0.033	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
1898	chr3	172193730	172193731	rs13061442	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q26.31	NR	rs13061442-C	NR	6E-11		0.0179	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
1898	chr3	172193932	172193933	rs115898535	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	3q26.31	NR	rs115898535-A	NR	6E-10		0.0429	[0.029-0.056] unit increase	Affymetrix [9000000] (imputed)	N
1898	chr3	172202449	172202450	rs2901790	28077804	Ben-Avraham D	2017-01-10	Aging (Albany NY)	The complex genetics of gait speed: genome-wide meta-analysis approach.	Gait speed in old age	31,478 European ancestry older adults	2,588 European ancestry older adults	3q26.31	intergenic	rs2901790-?	NR	8E-6		0.0086	[0.0049-0.0123] m/sec increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1898	chr3	172212143	172212144	rs57361543	31212010	Cabana-Dominguez J	2019-06-15	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association meta-analysis of cocaine dependence: Shared genetics with comorbid conditions.	Cocaine dependence	2,085 European ancestry cases, 4,293 European ancestry controls	NA	3q26.31	GHSR, TNFSF10	rs57361543-A	NR	5E-6		0.2015	[0.11-0.29] unit decrease	Illumina [9290362] (imputed)	N
1898	chr3	172221248	172221249	rs9849142	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q26.31	TNFSF10	rs9849142-G	NR	6E-9		0.0205113	[0.014-0.027] unit increase	Affymetrix [323123] (imputed)	N
1898	chr3	172222687	172222688	rs193272075	28282560	Pott J	2017-02-24	Atherosclerosis	Genome-wide meta-analysis identifies novel loci of plaque burden in carotid artery.	Carotid plaque burden	7,189 European ancestry individuals	NA	3q26.31	TNFSF10	rs193272075-T	NR	8E-6		0.14019829	[0.079-0.202] unit increase	Affymetrix [9576485] (imputed)	N
1898	chr3	172223981	172223982	rs17600346	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Osteoprotegerin levels	21,758 European ancestry individuals	9,173 individuals	3q26.31		rs17600346-T	0.96	1E-13		0.1683	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1898	chr3	172223981	172223982	rs17600346	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q26.31	TNFSF10	rs17600346-T	0.9621	2E-12		0.0472	[0.034-0.06] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
1899	chr3	172228826	172228827	rs1126161	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q26.31	NR	rs1126161-G	0.673134	6E-9		0.00755605	[0.005-0.0101] unit increase	Affymetrix [16585854] (imputed)	N
1899	chr3	172228826	172228827	rs1126161	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q26.31	NR	rs1126161-G	0.673134	7E-6		0.00687365	[0.0039-0.0098] unit increase	Affymetrix [16585866] (imputed)	N
1899	chr3	172234016	172234017	rs142552223	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Aspartate aminotransferase levels	386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals	NA	3q26.31	TNFSF10	rs142552223-?	NR	7E-30		0.0062	[0.0048-0.0076] unit decrease	Affymetrix [21347608] (imputed)	N
1899	chr3	172234016	172234017	rs142552223	34315874	Ward LD	2021-07-27	Nat Commun	GWAS of serum ALT and AST reveals an association of SLC30A10 Thr95Ile with hypermanganesemia symptoms.	Alanine aminotransferase levels	387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals	NA	3q26.31	TNFSF10	rs142552223-?	NR	2E-33		0.0125	[0.01-0.015] unit decrease	Affymetrix [21347608] (imputed)	N
1899	chr3	172234016	172234017	rs142552223	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	3q26.31		rs142552223-A	0.036	4E-56		0.4418	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1899	chr3	172234016	172234017	rs142552223	28369058	Folkersen L	2017-04-03	PLoS Genet	Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease.	Blood protein levels in cardiovascular risk	3,394 European ancestry individuals	2,639 individuals	3q26.31	intergenic	rs142552223-G	0.97	2E-25		0.81	unit increase	Illumina [5270624] (imputed)	N
1899	chr3	172234016	172234017	rs142552223	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q26.31	TNFSF10	rs142552223-A	0.0402	5E-9		0.05353311	[0.036-0.072] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1899	chr3	172252366	172252367	rs142505866	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.31		rs142505866-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1899	chr3	172253677	172253678	rs6764884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q26.31		rs6764884-G	0.856641	4E-8		0.0311554	[0.02-0.042] unit decrease	NR [11722792] (imputed)	N
1899	chr3	172253677	172253678	rs6764884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	3q26.31		rs6764884-G	0.856641	2E-9		0.033885	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
1899	chr3	172253677	172253678	rs6764884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q26.31		rs6764884-G	0.856641	7E-10		0.0342703	[0.023-0.045] unit increase	NR [11722792] (imputed)	N
1899	chr3	172253677	172253678	rs6764884	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q26.31		rs6764884-G	0.856641	3E-9		0.0332731	[0.022-0.044] unit increase	NR [11722792] (imputed)	N
1899	chr3	172253677	172253678	rs6764884	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q26.31	TNFSF10	rs6764884-T	0.1441	1E-6		0.0476	[0.028-0.067] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1899	chr3	172259505	172259506	rs140822617	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	3q26.31	TNFSF10, NCEH1	rs140822617-C	0.87	5E-16		8.12	z-score increase	Affymetrix [4312306] (imputed)	N
1899	chr3	172265632	172265633	rs144147880	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.31		rs144147880-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1899	chr3	172267802	172267803	rs13074711	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	3q26.31	TNFSF10, NCEH1	rs13074711-T	0.89	2E-20		9.27	z-score increase	Affymetrix [4314223] (imputed)	N
1899	chr3	172267802	172267803	rs13074711	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	3q26.31	NR	rs13074711-T	0.884275	3E-9		0.0280018	[0.019-0.037] unit increase	Affymetrix [16577313] (imputed)	N
1899	chr3	172267802	172267803	rs13074711	28171663	Huo D	2016-09-04	Hum Mol Genet	Genome-wide association studies in women of African ancestry identified 3q26.21 as a novel susceptibility locus for oestrogen receptor negative breast cancer.	Breast cancer (estrogen-receptor negative)	1349 African American cases, 42 African ancestry cases, 4,150 African American controls, 624 African ancestry controls	573 African American cases, 2,939 African American controls	3q26.31	TNFSF10	rs13074711-T	0.69	2E-8		1.29	[1.18-1.40]	Illumina [16147413] (imputed)	N
1899	chr3	172267802	172267803	rs13074711	28171663	Huo D	2016-09-04	Hum Mol Genet	Genome-wide association studies in women of African ancestry identified 3q26.21 as a novel susceptibility locus for oestrogen receptor negative breast cancer.	Breast cancer	3962 African American cases, 711 African ancestry cases, 4,150 African ancestry controls, 624 African ancestry controls	1,984 African American cases, 2,939 African American controls	3q26.31	TNFSF10	rs13074711-T	0.69	2E-6		1.14	[1.08-1.21]	Illumina [16147413] (imputed)	N
1899	chr3	172268610	172268611	rs232001	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	3q26.31		rs232001-C	0.37	7E-15		0.0876	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1899	chr3	172276494	172276495	rs565335253	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q26.31		rs565335253-G	0.986265	5E-9		0.114134	[0.076-0.152] unit decrease	NR [11722792] (imputed)	N
1899	chr3	172276501	172276502	rs532782761	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs532782761-C	0.014164	1E-10		0.06996259	[0.049-0.091] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr3	172276501	172276502	rs532782761	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	3q26.31	NLGN1	rs532782761-?	NR	2E-15		0.1014	[0.079-0.124] unit increase	Affymetrix [5701386] (imputed)	N
1899	chr3	172276504	172276505	rs550954854	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs550954854-C	0.01405	6E-12		0.07479028	[0.054-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr3	172276978	172276979	rs231988	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q26.31		rs231988-C	NR	2E-12		0.0241	[0.017-0.031] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
1899	chr3	172276978	172276979	rs231988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs231988-C	0.868428	1E-13		0.024568513	[0.018-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1899	chr3	172276978	172276979	rs231988	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs231988-T	0.131575	6E-19		0.029291902	[0.023-0.036] unit increase	Affymetrix [93095623] (imputed)	N
1899	chr3	172276978	172276979	rs231988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs231988-C	0.869588	2E-18				Affymetrix, Illumina [23467995] (imputed)	N
1899	chr3	172276978	172276979	rs231988	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q26.31	NR	rs231988-C	0.868197	5E-19		0.025769	[0.02-0.031] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
1899	chr3	172285236	172285237	rs58058861	32139696	Shu X	2020-03-05	Nat Commun	Identification of novel breast cancer susceptibility loci in meta-analyses conducted among Asian and European descendants.	Breast cancer	24,206 East Asian ancestry cases, 24,775 East Asian ancestry controls, 122,977 European ancestry cases, 105,974 European ancestry controls	10,829 East Asian ancestry cases, 10,996 East Asian ancestry controls, 5,958 Asian ancestry cases, 5,684 Asian ancestry controls	3q26.31		rs58058861-A	NR	3E-12		1.05	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1899	chr3	172285236	172285237	rs58058861	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q26.31	intergenic	rs58058861-A	0.21	2E-10	(EA)	1.06	[1.04-1.09] (Oncoarray)	Illumina [~ 11800000] (imputed)	N
1899	chr3	172292483	172292484	rs2286983	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q26.31	NR	rs2286983-A	NR	1E-11		0.0189	[0.013-0.024] unit increase	Affymetrix [9000000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	3q26.31		rs79287178-G	0.968897	2E-8		0.0678442	[0.044-0.092] unit decrease	NR [11722792] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	3q26.31		rs79287178-G	0.968897	1E-15		0.0987584	[0.075-0.123] unit decrease	NR [11722792] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	4E-15		0.0549	[0.041-0.069] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	8E-14		0.052	[0.038-0.066] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	3E-11		0.0381	[0.027-0.049] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	1E-10		0.0376	[0.026-0.049] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	1E-35		0.0834	[0.07-0.097] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	8E-37		0.0874	[0.074-0.101] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q26.31		rs79287178-A	NR	7E-44		0.0935	[0.08-0.107] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q26.31		rs79287178-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Liver volume	32,860 European ancestry individuals	NA	3q26.31	TNFSF10	rs79287178-?	NR	8E-13		0.151	NR L increase	Affymetrix [9390170] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	3q26.31	LINC02068	rs79287178-G	0.968804	4E-43		0.0214992	[0.018-0.025] unit decrease	Affymetrix [13995440] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	3q26.31	NR	rs79287178-A	NR	8E-24		0.0733	[0.059-0.088] unit increase	Affymetrix [9000000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand receptor 2 levels	21,758 European ancestry individuals	9,173 individuals	3q26.31		rs79287178-A	0.034	8E-9		0.1652	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	3q26.31		rs79287178-A	0.033	7E-69		0.5425	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.0312750000000001	7E-20		0.061735544	[0.048-0.075] unit increase	Affymetrix [93095623] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.031273	3E-18		0.05865233	[0.045-0.072] unit increase	Affymetrix [93095623] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.031206	4E-21		0.06313064	[0.05-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.03122	5E-16		0.054546416	[0.041-0.068] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.031227	2E-11		0.044805232	[0.032-0.058] unit decrease	Affymetrix [93095623] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.030214	2E-22				Affymetrix, Illumina [24588908] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.031324	5E-25		0.056581	[0.046-0.067] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.0301819	3E-13				Affymetrix, Illumina [24653286] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.031245	8E-16		0.04455	[0.034-0.055] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.030216	3E-12				Affymetrix, Illumina [24558453] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q26.31	NR	rs79287178-A	0.031284	3E-15		0.043615	[0.033-0.054] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q26.31	TNFSF10	rs79287178-G	0.96885	7E-17		0.0502069	[0.038-0.062] unit decrease	Affymetrix [NR] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q26.31	NR	rs79287178-G	0.968606	2E-51		0.0368717	[0.032-0.042] unit increase	Affymetrix [16582909] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q26.31	NR	rs79287178-G	0.968996	4E-19		0.0317393	[0.024-0.039] unit increase	Affymetrix [16585854] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q26.31	NR	rs79287178-G	0.968196	1E-37		0.0413287	[0.035-0.048] unit increase	Affymetrix [16582621] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q26.31	NR	rs79287178-G	0.968606	4E-36		0.0347016	[0.029-0.04] unit increase	Affymetrix [16582965] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q26.31	NR	rs79287178-G	0.968996	4E-12		0.0279964	[0.02-0.036] unit increase	Affymetrix [16585866] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q26.31	NR	rs79287178-G	0.968196	4E-30		0.0397047	[0.032-0.047] unit increase	Affymetrix [16582614] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q26.31	TNFSF10	rs79287178-A		9E-25		0.4317	[0.35-0.51] SD units increase	NR [10700000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.0338	5E-10		0.0670373	[0.046-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
1899	chr3	172294499	172294500	rs79287178	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q26.31	RP11-408H1.3	rs79287178-A	0.0338	2E-9		0.06418105	[0.043-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1899	chr3	172311711	172311712	rs234051	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	3q26.31		rs234051-G	NR	1E-8		0.0131	[0.0086-0.0176] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
1899	chr3	172311711	172311712	rs234051	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q26.31	NR	rs234051-A	0.284143	2E-15		0.00921532	[0.0067-0.0117] unit increase	Affymetrix [16582621] (imputed)	N
1899	chr3	172311711	172311712	rs234051	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q26.31	NR	rs234051-A	0.284143	3E-11		0.00836181	[0.0057-0.011] unit increase	Affymetrix [16582614] (imputed)	N
1899	chr3	172313366	172313367	rs234043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q26.31	NR	rs234043-T	0.282243	1E-27		0.00927609	[0.0075-0.0111] unit increase	Affymetrix [16582909] (imputed)	N
1899	chr3	172313366	172313367	rs234043	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q26.31	NR	rs234043-T	0.282243	5E-17		0.00792581	[0.0059-0.01] unit increase	Affymetrix [16582965] (imputed)	N
1899	chr3	172313366	172313367	rs234043	28598434	Scelo G	2017-06-09	Nat Commun	Genome-wide association study identifies multiple risk loci for renal cell carcinoma.	Renal cell carcinoma	10,784 European ancestry cases, 20,406 European ancestry controls	3,182 European ancestry cases, 6,301 European ancestry controls	3q26.31	NR	rs234043-?	NR	1E-7		1.0980564	[1.06-1.14]	Illumina [7437091] (imputed)	N
1899	chr3	172317572	172317573	rs59837038	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q26.31	NR	rs59837038-T	0.26931799999999995	2E-12		0.00925679	[0.0065-0.012] unit increase	Affymetrix [16585854] (imputed)	N
1899	chr3	172317572	172317573	rs59837038	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q26.31	NR	rs59837038-T	0.26931799999999995	4E-7		0.00808511	[0.0049-0.0113] unit increase	Affymetrix [16585866] (imputed)	N
1899	chr3	172321975	172321976	rs9872004	28641921	Li J	2017-05-15	Neurobiol Aging	Genome-wide association and interaction studies of CSF T-tau/A?42 ratio in ADNI cohort.	Cerebrospinal fluid t-tau:AB1-42 ratio	113 European ancestry Alzheimer's disease cases, 207 European ancestry individuals with late mild cognitive impairment, 239 European ancestry individuals with early mild cognitive impairment, 85 European ancestry individuals with significant memory concern, 199 European ancestry controls.	NA	3q26.31	AADACL1	rs9872004-?		3E-8				Illumina [563980]	N
1900	chr3	172364092	172364093	rs3850174	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q26.31		rs3850174-A	0.2541	9E-9		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1900	chr3	172364092	172364093	rs3850174	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3q26.31	NCEH1	rs3850174-T	0.7424999999999999	3E-15		1.0348753		Affymetrix [11880941] (imputed)	N
1900	chr3	172364092	172364093	rs3850174	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.31	NCEH1	rs3850174-T	0.7424999999999999	3E-15		1.0352055		Affymetrix [11880941] (imputed)	N
1900	chr3	172364092	172364093	rs3850174	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q26.31		rs3850174-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1900	chr3	172381776	172381777	rs11717887	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 91,972 European ancestry controls	6,852 European ancestry cases, 193,117 European ancestry controls	3q26.31	NR	rs11717887-C	0.373329354	4E-6		1.0832849	[1.05-1.12]	Affymetrix, Illumina [20400945] (imputed)	N
1900	chr3	172381776	172381777	rs11717887	33398198	Conti DV	2021-01-04	Nat Genet	Trans-ancestry genome-wide association meta-analysis of prostate cancer identifies new susceptibility loci and informs genetic risk prediction.	Prostate cancer	85,554 European ancestry cases, 10,368 African ancestry cases, 8,611 East Asian ancestry cases, 2,714 Hispanic cases, 91,972 European ancestry controls, 10,986 African ancestry controls, 18,809 East Asian ancestry controls, 5,239 Hispanic controls	NA	3q26.31	NR	rs11717887-C	NR	3E-8		1.041	[1.03-1.06]	Affymetrix, Illumina [29235255] (imputed)	N
1900	chr3	172385692	172385693	rs11712263	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA		NCEH1	rs11712263-A	0.135	8E-6	(HDL )	0.03	[NR] mg/dL increase	Illumina [899892]	N
1900	chr3	172390817	172390818	rs73173340	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q26.31	NR	rs73173340-G		2E-10		0.3146	[0.22-0.41] SD units increase	NR [10700000] (imputed)	N
1900	chr3	172462473	172462474	rs75979836	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	3q26.31	NR	rs75979836-G	0.0547	4E-6		0.3189	[0.18-0.45] unit increase	Illumina [7305641] (imputed)	N
1900	chr3	172476418	172476419	rs7646507	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q26.31	ECT2	rs7646507-G	0.084	8E-6	(TG/HDLC )	0.03	[NR] mmol/L increase	Illumina [899892]	N
1901	chr3	172529933	172529934	rs116467561	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q26.31	NR	rs116467561-C	0.944327	1E-10		0.026751	[0.019-0.035] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1901	chr3	172529933	172529934	rs116467561	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q26.31	NR	rs116467561-C		2E-9		0.2099	[0.14-0.28] SD units increase	NR [10700000] (imputed)	N
1901	chr3	172534976	172534977	rs75052594	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	3q26.31		rs75052594-?	NR	2E-8		2.3871	[1.56-3.22] unit increase	Affymetrix [NR] (imputed)	N
1901	chr3	172538064	172538065	rs76864072	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.31	ECT2	rs76864072-T	0.055154	6E-11		0.03182379	[0.022-0.041] unit increase	Affymetrix [93095623] (imputed)	N
1902	chr3	172659245	172659246	rs10440041	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q26.31	SPATA16	rs10440041-?		1E-8				Illumina [4322238] (imputed)	N
1902	chr3	172676578	172676579	rs9814222	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q26.31		rs9814222-A	0.42	4E-11		6.61	z score increase	Affymetrix [9061022] (imputed)	N
1902	chr3	172676578	172676579	rs9814222	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q26.31	NR	rs9814222-A	0.436	6E-13				NR [9056863] (imputed)	N
1902	chr3	172676831	172676832	rs9852333	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q26.31		rs9852333-G	0.46	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
1902	chr3	172676881	172676882	rs9856196	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q26.31		rs9856196-C	0.42	6E-15		7.79	z score increase	Affymetrix [9061022] (imputed)	N
1902	chr3	172677777	172677778	rs9857900	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 31)	19,670 European ancestry individuals	NA	3q26.31		rs9857900-?	NR	7E-15				NR [9705931] (imputed)	N
1902	chr3	172697081	172697082	rs6810290	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q26.31	NR	rs6810290-T	0.4319	3E-11				NR [9056863] (imputed)	N
1903	chr3	172779634	172779635	rs62282609	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.31	NR	rs62282609-A	0.01742	7E-9	(MVD)	0.06384	NR unit increase	Illumina [1671387] (imputed)	N
1903	chr3	172780966	172780967	rs6445096	31260374	Pedergnana V	2019-07-01	J Interferon Cytokine Res	Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients.	Response to interferon treatment in hepatitis C virus genotype 3	717 European, Asian and unknown ancestry responders, 541 European, Asian and unknown ancestry non-responders	NA	3q26.31	NR	rs6445096-?	NR	3E-7		1.57	NR	Affymetrix [~ 18000000] (imputed)	N
1903	chr3	172798799	172798800	rs1878007	24839885	Benke KS	2014-02-19	J Am Acad Child Adolesc Psychiatry	A genome-wide association meta-analysis of preschool internalizing problems.	Preschool internalizing problems	3,121 European ancestry individuals, 1,475 children from 1,031 families	NA	3q26.31	NR	rs1878007-A	0.1702	9E-6		0.12	[0.069-0.18] unit decrease	Affymetrix, Illumina [2403520] (imputed)	N
1903	chr3	172815694	172815695	rs189216063	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	3q26.31	NR	rs189216063-C		1E-6		0.2262	[0.13-0.32] SD units decrease	NR [10700000] (imputed)	N
1904	chr3	172980411	172980412	rs77028493	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	3q26.31		rs77028493-C	0.987459	5E-6		0.0543735	[0.031-0.078] unit increase	Illumina [13900000] (imputed)	N
1905	chr3	173072583	173072584	rs1187820	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.31	NR	rs1187820-T	0.439	1E-9		0.00684521	[0.0046-0.009] unit decrease	NR [9732723] (imputed)	N
1905	chr3	173072583	173072584	rs1187820	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q26.31	NR	rs1187820-T	0.439	3E-8	(Conditioned on chr3:173353739)	0.014271156	[0.0092-0.0193] unit decrease	NR [~ 10000000] (imputed)	N
1905	chr3	173072583	173072584	rs1187820	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q26.31	NR	rs1187820-T	0.432	3E-8		0.00831491	[0.0054-0.0113] unit increase	NR [9732723] (imputed)	N
1905	chr3	173095122	173095123	rs39654	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.31	NA	rs39654-A	0.4513	2E-21		0.0163	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1905	chr3	173107442	173107443	rs247975	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q26.31	NR	rs247975-C	0.5623	2E-11		0.0254	[0.018-0.033] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1905	chr3	173107442	173107443	rs247975	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Longevity	up to 482,000 European ancestry individuals	NA	3q26.31	NR	rs247975-A	NR	2E-7		0.01056	[0.0066-0.0146] unit increase	Illumina [~ 540852]	N
1905	chr3	173107442	173107443	rs247975	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q26.31	NA	rs247975-T	0.4648	3E-21		0.0163	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
1905	chr3	173112906	173112907	rs694786	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q26.31	NR	rs694786-C	0.5395	2E-13		1.0449321	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1905	chr3	173113040	173113041	rs12635614	34045744	Levey DF	2021-05-27	Nat Neurosci	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.	Major depressive disorder	340,591 European ancestry cases, 813,676 European ancestry controls	455,350 cases, 887,428 controls	3q26.31		rs12635614-?	NR	3E-15		0.0214	unit increase	NR [NR]	N
1905	chr3	173113040	173113041	rs12635614	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q26.31	NA	rs12635614-A	0.5134	9E-9	(Female)	1.044	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
1905	chr3	173114166	173114167	rs583514	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	3q26.31	NLGN1	rs583514-T	0.4889	2E-9		0.0199	[0.013-0.026] unit decrease	Affymetrix, Illumina [7666890] (imputed)	N
1905	chr3	173114304	173114305	rs529200	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q26.31		rs529200-G	NR	8E-15		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1905	chr3	173114304	173114305	rs529200	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	3q26.31		rs529200-G	0.53	5E-6		0.009	mmol/L increase	NR [NR] (imputed)	N
1905	chr3	173114304	173114305	rs529200	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q26.31		rs529200-G	0.53	9E-9				NR [NR] (imputed)	N
1905	chr3	173114304	173114305	rs529200	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	3q26.31		rs529200-G	0.53	7E-7		0.009	mmol/L decrease	NR [NR] (imputed)	N
1905	chr3	173114304	173114305	rs529200	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q26.31		rs529200-G	0.53	6E-12		0.01	% increase	NR [NR] (imputed)	N
1905	chr3	173114304	173114305	rs529200	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q26.31	NLGN1	rs529200-A	0.47215	6E-14		0.0103148	[0.0076-0.013] unit decrease	Affymetrix [12370749]	N
1905	chr3	173114304	173114305	rs529200	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.31	NR	rs529200-?	NR	1E-17				Affymetrix [~ 8270000] (imputed)	N
1905	chr3	173114304	173114305	rs529200	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.31		rs529200-?	NR	1E-17				NR [~ 8900000] (imputed)	N
1905	chr3	173114304	173114305	rs529200	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	3q26.31	NLGN1	rs529200-A	0.4741	7E-9		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
1905	chr3	173119767	173119768	rs686998	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q26.31	NR	rs686998-G	0.539	6E-9		0.0267	[0.018-0.036] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1905	chr3	173119767	173119768	rs686998	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q26.31		rs686998-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1906	chr3	173180632	173180633	rs11709498	24024966	Teumer A	2013-08-14	J Clin Periodontol	Genome-wide association study of chronic periodontitis in a general German population.	Periodontitis (DPAL)	up to 2,501 European ancestry individuals	NA	3q26.31	NLGN1	rs11709498-C	0.65	6E-6	(Age 20-81 years)	0.1549	[0.089-0.221] unit decrease	Affymetrix, Illumina [up to 17585496] (imputed)	N
1907	chr3	173307999	173308000	rs41334545	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.31	NR	rs41334545-?	NR	2E-9				Affymetrix [NR]	N
1907	chr3	173324489	173324490	rs138136388	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	3q26.31		rs138136388-T	0.9685	5E-6		0.0357281	[0.02-0.051] unit decrease	Illumina [13900000] (imputed)	N
1907	chr3	173353738	173353739	rs16828799	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q26.31	NR	rs16828799-T	0.156	2E-8		0.019769227	[0.013-0.027] unit increase	NR [~ 10000000] (imputed)	N
1907	chr3	173384588	173384589	rs11713169	25628336	Hromatka BS	2015-01-26	Hum Mol Genet	Genetic variants associated with motion sickness point to roles for inner ear development, neurological processes and glucose homeostasis.	Motion sickness	80,494 European ancestry individuals	NA	3q26.31	NLGN1	rs11713169-C	0.16	6E-13		0.052	[0.038-0.067] unit decrease	Illumina [7428049] (imputed)	N
1907	chr3	173397339	173397340	rs10936767	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.31	NR	rs10936767-T	0.196	3E-11		0.00902032	[0.0064-0.0117] unit increase	NR [9732723] (imputed)	N
1907	chr3	173397339	173397340	rs10936767	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	3q26.31	NR	rs10936767-T	0.199	1E-8		0.0104391	[0.0069-0.014] unit decrease	NR [9732723] (imputed)	N
1907	chr3	173397995	173397996	rs7640631	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q26.31		rs7640631-C	0.752	6E-9		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	8E-7	(TAG 52:5)	2.3082063	[1.39-3.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	8E-6	(TAG 54:6)	2.058503	[1.15-2.96] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	7E-6	(DAG 36:2)	2.1326613	[1.2-3.07] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	6E-6	(TAG 56:4)	2.1029994	[1.19-3.02] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	5E-6	(TAG 56:3)	2.157752	[1.23-3.09] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	4E-6	(TAG 50:4)	2.1555877	[1.24-3.08] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173466429	173466430	rs16830107	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	SPATA16	rs16830107-?	NR	2E-6	(TAG 52:4)	2.2461343	[1.33-3.17] unit increase	Affymetrix [at least 2500000] (imputed)	N
1908	chr3	173504146	173504147	rs34626435	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.31	NR	rs34626435-A	NR	9E-8		1.1	[NR]	Illumina [7158791] (imputed)	N
1909	chr3	173540105	173540106	rs34096808	27890468	van Hulzen KJE	2016-10-18	Biol Psychiatry	Genetic Overlap Between Attention-Deficit/Hyperactivity Disorder and Bipolar Disorder: Evidence From Genome-wide Association Study Meta-analysis.	Bipolar disorder or attention deficit hyperactivity disorder	9,650 European ancestry bipolar disorder cases, 2,950 European ancestry ADHD cases, 1,659 European and unknown ancestry ADHD cases, 16,325 European ancestry controls, 2,942 European and unknown ancestry controls, 2,096 controls	NA	3q26.31	NLGN1	rs34096808-?	NR	1E-7				Affymetrix, Illumina [NR] (imputed)	N
1909	chr3	173584667	173584668	rs6445124	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-to-hip ratio adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,049 whole genome sequenced individuals, 29,518 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,001 Mylopotamos (founder/genetic isolate) individuals, 867 Pomak (founder/genetic isolate) individuals	206,045 European ancestry individuals	3q26.31	NLGN1	rs6445124-T	0.9955	8E-6		0.3516	[0.2-0.51] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1910	chr3	173681839	173681840	rs963349	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	3q26.31	NLGN1	rs963349-C	0.2616	1E-11		0.015008384	[0.011-0.019] unit increase	Illumina [9339358] (imputed)	N
1910	chr3	173710694	173710695	rs59489841	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q26.31	NR	rs59489841-C	0.7015	3E-8		0.0235	[0.015-0.032] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
1910	chr3	173742541	173742542	rs9832402	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q26.31	NR	rs9832402-G	0.2505	3E-9		0.016955974	[0.011-0.023] unit decrease	Affymetrix [10549349] (imputed)	N
1911	chr3	173895957	173895958	rs9872844	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q26.31	NLGN1	rs9872844-A	0.8575	5E-6		0.0442	[0.025-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1911	chr3	173902543	173902544	rs6782422	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental extreme longevity (95 years and older)	1,339 middle-aged British cases, 40,934 middle-aged British controls	NA	3q26.31	NR	rs6782422-?	NR	7E-6		0.0054	[0.003-0.0078] unit decrease	Affymetrix [9658292] (imputed)	N
1911	chr3	173919112	173919113	rs115092681	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3q26.31	NLGN1	rs115092681-?	NR	1E-6	(AA)	0.061	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1911	chr3	173924057	173924058	rs1421418	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.31		rs1421418-T	0.2599	8E-9	(conditional-joint)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1911	chr3	173928735	173928736	rs4894658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.31		rs4894658-C	0.2619	1E-8		0.0091	[0.006-0.0122] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1911	chr3	173928735	173928736	rs4894658	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.31	Intergenic	rs4894658-C	0.2619	1E-8	(MTAG)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1912	chr3	173968468	173968469	rs138288216	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	3q26.31	NLGN1	rs138288216-T	0.009	3E-7	(Antiinflammatory preparations, non-steroids for topical use [M02AA])	4.26		Illumina [16500000] (imputed)	N
1912	chr3	174027743	174027744	rs79553323	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3q26.31		rs79553323-?	NR	6E-6		0.5859968	[0.33-0.84] unit decrease	Illumina [9906551] (imputed)	N
1912	chr3	174029044	174029045	rs13074924	20516156	Lewis CM	2010-06-01	Am J Psychiatry	Genome-wide association study of major recurrent depression in the U.K. population.	Major depressive disorder	1,636 European ancestry cases, 1,594 European ancestry controls	1,418 European ancestry cases, 1,918 European ancestry controls	3q26.31	NLGN1	rs13074924-?	0.36	9E-6		1.18	[NR]	Illumina [471747]	N
1913	chr3	174079286	174079287	rs78393327	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	3q26.31	NR	rs78393327-T	NR	1E-6		0.325	[0.2-0.45] unit decrease	Illumina [6319684] (imputed)	N
1913	chr3	174085204	174085205	rs1464314	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	3q26.31	RP11-393N4.2	rs1464314-C	NR	8E-6		0.02654	[0.015-0.038] unit increase	Illumina [NR] (imputed)	N
1913	chr3	174135030	174135031	rs9825640	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	3q26.31	NR	rs9825640-?		8E-6		1.99	[1.47-2.69]	Illumina [539473] (imputed)	N
1913	chr3	174154491	174154492	rs187974900	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	3q26.31	Intergenic	rs187974900-?	NR	4E-6		17.54	[5.18-59.44]	Illumina [8600000] (imputed)	N
1913	chr3	174194242	174194243	rs10936797	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q26.31	intergenic	rs10936797-C	0.296	2E-6	(Total T4 )	0.03	[NR] ug/dL increase	Illumina [899892]	N
1914	chr3	174211026	174211027	rs149523908	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	3q26.31	NAALADL2	rs149523908-C	0.009	3E-6		4.54	[2.40-8.59]	Illumina [8672852] (imputed)	N
1914	chr3	174214044	174214045	rs1106095	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	3q26.31	NAALADL2	rs1106095-A	0.2378	2E-9		0.016701508	[0.011-0.022] unit increase	Affymetrix [11515109] (imputed)	N
1914	chr3	174275707	174275708	rs938438	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		NAALADL2	rs938438-?	NR	4E-10		1.33561	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1914	chr3	174294878	174294879	rs16862035	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.31	NR	rs16862035-?	NR	6E-8				Affymetrix [NR]	N
1914	chr3	174310824	174310825	rs16862256	27490719	Bacelis J	2016-08-04	PLoS One	Literature-Informed Analysis of a Genome-Wide Association Study of Gestational Age in Norwegian Women and Children Suggests Involvement of Inflammatory Pathways.	Gestational age at birth in labor-initiated deliveries (child effect)	884 Norwegian ancestry children	NA	3q26.31	NR	rs16862256-G		5E-6				NR [525577]	N
1915	chr3	174350885	174350886	rs517875	28333195	Uimari O	2017-04-01	Hum Reprod	Genome-wide genetic analyses highlight mitogen-activated protein kinase (MAPK) signaling in the pathogenesis of endometriosis.	Deep ovarian and/or rectovaginal disease with dense adhesions	1,364 European ancestry cases, 7,060 European ancestry controls.	NA	3q26.31	NAALADL2	rs517875-?	NR	1E-7		1.23	[1.13-1.33]	Illumina [NR] (imputed)	N
1915	chr3	174362704	174362705	rs62284709	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of pictures	2,562 European ancestry individuals	NA	3q26.31	NAALADL2	rs62284709-T	0.936606	2E-6		0.34194	[0.2-0.48] unit increase	Illumina [6952813] (imputed)	N
1915	chr3	174385621	174385622	rs7629875	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Tumor necrosis factor beta levels	1,559 Finnish ancestry individuals	NA	3q26.31	NR	rs7629875-G		1E-6		0.3766	[0.22-0.53] SD units decrease	NR [10700000] (imputed)	N
1916	chr3	174487311	174487312	rs150291119	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		3q26.31	Intergenic	rs150291119-A	0.005	3E-6	(liability model)	0.6	[0.35-0.85] unit increase	NR [19725427] (imputed)	N
1916	chr3	174519229	174519230	rs187089444	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	3q26.31	NR	rs187089444-A	0.029	9E-7	(Latino)	2.19	[1.60-2.99]	Affymetrix [9737707] (imputed)	N
1916	chr3	174519477	174519478	rs73050171	30487263	Pollack S	2018-11-28	Diabetes	Multiethnic Genome-wide Association Study of Diabetic Retinopathy using Liability Threshold Modeling of Duration of Diabetes and Glycemic Control.	Proliferative diabetic retinopathy (vs NPDR and no DR)	398 European ancestry cases, 2,848 European ancestry controls, 1,097 African American cases, 1,514 African American controls	918 East Asian ancestry cases, 1,167 East Asian ancestry controls, 2,038 European ancestry cases, 6,783 European ancestry controls, 232 Hispanic cases, 2,194 Hispanic controls	3q26.31	NR	rs73050171-?	NR	5E-7	(AA, adjusted for duration of diabetes and glycemic control)	1.5	[NR]	Affymetrix, Illumina [NR] (imputed)	N
1916	chr3	174564601	174564602	rs3914502	26398136	Kuo PH	2015-09-23	PLoS One	Genome-Wide Association Study for Autism Spectrum Disorder in Taiwanese Han Population.	Autism spectrum disorder	315 Han Chinese ancestry cases, 1,115 Han Chinese ancestry controls	282 Han Chinese ancestry cases, 480 Han Chinese ancestry controls	3q26.31	NAALADL2	rs3914502-A	0.38	4E-6		1.4	[1.20-1.60]	Affymetrix [546171]	N
1916	chr3	174582722	174582723	rs16865252	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	3q26.31	NR	rs16865252-A	0.28	7E-6	(AA)	0.09	[0.051-0.129] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
1918	chr3	174758301	174758302	rs12633726	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	3q26.31	NAALADL2	rs12633726-?	0.1538	6E-7		4.304	[2.377-7.793]	Affymetrix [547296]	N
1918	chr3	174805561	174805562	rs9813064	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	3q26.31	NR	rs9813064-G	0.1384	5E-8		0.0169	[0.011-0.023] unit increase	Illumina [NR] (imputed)	N
1918	chr3	174805561	174805562	rs9813064	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms	354,862 European ancestry individuals	NA	3q26.31	NR	rs9813064-G	0.1384	1E-8		0.0195	[0.013-0.026] unit increase	Illumina [NR] (imputed)	N
1919	chr3	174893297	174893298	rs16824453	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.31	NR	rs16824453-?	NR	4E-7				Affymetrix [NR]	N
1919	chr3	174893774	174893775	rs17531088	19132087	Burgner D	2009-01-09	PLoS Genet	A genome-wide association study identifies novel and functionally related susceptibility Loci for Kawasaki disease.	Kawasaki disease	107 European ancestry cases, 134 European ancestry controls	583 European ancestry cases, 1,357 European ancestry controls from 583 families	3q26.31	NAALADL2	rs17531088-T	0.44	1E-6		1.43	[1.32-1.53]	Affymetrix [223922]	N
1919	chr3	174961386	174961387	rs1463525	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	3q26.31	NAALADL2	rs1463525-?	0.43	8E-6	(case-only)	1.37	[1.19-1.59]	Illumina [421318] (imputed)	N
1919	chr3	174971515	174971516	rs12633712	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.31	NLGN1	rs12633712-?	NR	5E-6	(niacinamide)	0.16743188	[0.095-0.239] unit increase	Affymetrix [at least 2500000] (imputed)	N
1920	chr3	175036772	175036772	rs397813807	29460428	Gelernter J	2018-02-20	Alcohol Clin Exp Res	Genomewide association study of alcohol dependence and related traits in a Thai population.	Response to alcohol consumption (flushing response)	537 Thai ancestry individuals with flushing response, 508 Thai ancestry individuals without flushing response	NA	3q26.31	NAALADL2	rs397813807-A	0.8135	4E-6		0.5386	[0.31-0.77] unit increase	Illumina [at least 4683137] (imputed)	N
1920	chr3	175055758	175055759	rs2042126	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep duration	2,278 European ancestry individuals	NA	3q26.31	NAALADL2	rs2042126-G	0.48	3E-6		0.14	[0.081-0.199] unit decrease	Illumina [2380486] (imputed)	N
1920	chr3	175063194	175063195	rs6772835	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q26.31	Intergenic	rs6772835-?		3E-6		1.4705882	[1.25-1.72]	Illumina [7645193] (imputed)	N
1920	chr3	175103613	175103614	rs62287976	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	3q26.31	MIR4789, NAALADL2	rs62287976-T		1E-6		0.3082	unit increase	Illumina [5767231] (imputed)	N
1921	chr3	175223895	175223896	rs74619861	24322204	Winham SJ	2013-12-10	Mol Psychiatry	Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.	Bipolar disorder (body mass index interaction)	388 European ancestry cases, 1,020 European ancestry controls	NA	3q26.31	NR	rs74619861-?	NR	3E-6				NR [up to 8466825] (imputed)	N
1922	chr3	175252735	175252736	rs78943174	25939597	Berndt SI	2015-05-05	Nat Commun	Two susceptibility loci identified for prostate cancer aggressiveness.	Prostate cancer aggressiveness	4,545 European ancestry cases	7,973 European ancestry cases	3q26.31	NAALADL2	rs78943174-C	0.987	4E-8		0.289	[0.19-0.39] unit increase	Illumina [1531807] (imputed)	N
1922	chr3	175253632	175253633	rs75649340	32890573	Yan Q	2020-09-02	J Allergy Clin Immunol	A genome-wide association study of asthma hospitalizations in adults.	Exacerbations requiring hospitalisation in asthma	1,658 British ancestry cases, 32,509 British ancestry controls	NA	3q26.31	NR	rs75649340-A	0.93	1E-6		1.36	[NR]	Affymetrix [87696888] (imputed)	N
1922	chr3	175333897	175333898	rs4459914	31201950	Lutz MW	2019-03-06	Neurobiol Aging	Analysis of pleiotropic genetic effects on cognitive impairment, systemic inflammation, and plasma lipids in the Health and Retirement Study.	Cognitive impairment	355 European ancestry cases, 6,190 European ancestry controls	NA	3q26.31		rs4459914-G	0.28	3E-7		1.43	[1.29-1.56]	Illumina [19468843] (imputed)	N
1923	chr3	175394988	175394989	rs13326866	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	6,165 European and unknown ancestry individuals	NA	3q26.31	NAALADL2	rs13326866-G	0.12	3E-7		1.32	[1.21-1.43]	Affymetrix, Illumina [~ 8500000] (imputed)	N
1923	chr3	175416098	175416099	rs190103771	31668730	Cintho Ozahata M	2019-10-24	J Sex Med	Clinical and Genetic Predictors of Priapism in Sickle Cell Disease: Results from the Recipient Epidemiology and Donor Evaluation Study III Brazil Cohort Study.	Priapism in sickle cell disease	169 European, African, Hispanic or unknown ancestry cases, 433 European, African, Hispanic or unknown ancestry controls	NA	3q26.31	NAALADL2	rs190103771-?	NR	3E-8		3.333333	NR	Affymetrix [831797] (imputed)	N
1923	chr3	175421844	175421845	rs6773175	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		3q26.31	NAALADL2	rs6773175-?		9E-6				Affymetrix [7000000] (imputed)	N
1924	chr3	175540276	175540277	rs113420566	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	3q26.31	NAALADL2	rs113420566-G	0.046	9E-6		4.7619047	[2.38-9.09]	Illumina [7759885] (imputed)	N
1925	chr3	175647164	175647165	rs6772209	21642993	Wu C	2011-06-05	Nat Genet	Genome-wide association study identifies three new susceptibility loci for esophageal squamous-cell carcinoma in Chinese populations.	Esophageal cancer	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	3,986 Han Chinese ancestry cases, 4,157 Han Chinese ancestry controls	3q26.31	TBL1XR1	rs6772209-G	0.97	3E-7		1.49	[1.28-1.75]	Affymetrix [666141]	N
1925	chr3	175672896	175672897	rs72622559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.31		rs72622559-T	0.2301	6E-13		0.012	[0.0087-0.0153] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1925	chr3	175672896	175672897	rs72622559	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.31	Intergenic	rs72622559-T	0.2301	1E-12	(MTAG)	0.0111	[0.008-0.0142] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1925	chr3	175685451	175685452	rs112860941	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3q26.31	NR	rs112860941-A	0.253479	1E-10		0.05212309	[0.036-0.068] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1925	chr3	175689046	175689047	rs144874692	30704525	Guyatt AL	2019-01-31	Hum Genomics	A genome-wide association study of mitochondrial DNA copy number in two population-based cohorts.	Mitochondrial DNA copy number	3,647 European ancestry children	NA	3q26.31	NAALADL2, MIR7977	rs144874692-A	NR	2E-8		0.632	[0.41-0.85] unit decrease	Illumina [7410776] (imputed)	N
1925	chr3	175701410	175701410	rs112464755	32066663	Niarchou M	2020-02-03	Transl Psychiatry	Genome-wide association study of dietary intake in the UK biobank study and its associations with schizophrenia and other traits.	Lamb consumption	335,576 European ancestry individuals	NA	3q26.31	intergenic	rs112464755-?	NR	1E-8		0.0156408	[0.01-0.021] unit increase	Affymetrix [25921788] (imputed)	N
1925	chr3	175701527	175701528	rs66481714	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.31	NR	rs66481714-T	0.273	3E-10		0.00760626	[0.0052-0.01] unit increase	NR [9732723] (imputed)	N
1925	chr3	175718926	175718927	rs9841807	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q26.32	NR	rs9841807-T	0.273	1E-8		0.016253479	[0.011-0.022] unit increase	NR [~ 10000000] (imputed)	N
1925	chr3	175729968	175729969	rs115363778	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3q26.32	Intergenic	rs115363778-T	NR	3E-6	(men)	0.117835	[0.068-0.167] unit increase	Illumina [13520550] (imputed)	N
1925	chr3	175729968	175729969	rs115363778	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3q26.32	Intergenic	rs115363778-T	NR	3E-6		0.0820503	[0.047-0.117] unit increase	Illumina [13520550] (imputed)	N
1925	chr3	175736705	175736706	rs7646954	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q26.32		rs7646954-G	0.726	2E-12		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1925	chr3	175762094	175762095	rs57939424	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.32		rs57939424-A	0.2494	2E-13	(conditional-joint)	0.0119	[0.0088-0.015] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1926	chr3	175826796	175826797	rs79210778	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness	2,075 European ancestry cases, 3,875 European ancestry controls, 427 African American cases, 398 African American controls, 294 Hispanic cases, 327 Hispanic controls, 57 cases, 73 controls	NA	3q26.32	NAALADL2, MIR7977	rs79210778-?	NR	4E-6	(EA)	0.135	[0.077-0.193] unit increase	Illumina [7176022] (imputed)	N
1926	chr3	175893471	175893472	rs114275839	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	3q26.32		rs114275839-G	0.947717	7E-6		0.0190711	[0.011-0.027] unit increase	Illumina [13900000] (imputed)	N
1927	chr3	175927450	175927451	rs11923600	23456168	Hao Y	2013-03-03	Hum Genet	Genome-wide association study in Han Chinese identifies three novel loci for human height.	Height	6,534 Han Chinese ancestry individuals	1,881 Han Chinese ancestry individuals from 637 families	3q26.32	NAALADL2	rs11923600-G	0.71	8E-6		0.084	[0.047-0.121] unit increase	Affymetrix [1532051] (imputed)	N
1927	chr3	175937782	175937783	rs10936879	33859377	Thorp JG	2021-04-15	Nat Hum Behav	Symptom-level modelling unravels the shared genetic architecture of anxiety and depression.	Anxiety	at least 23,606 European ancestry cases, at least 113,351 European ancestry controls	624,615 European ancestry cases, 1,310,854 European ancestry controls	3q26.32	RP11, 78E6.1	rs10936879-T	0.3449	8E-11		0.015274232	[0.01-0.021] unit increase	NR [9417325] (imputed)	N
1927	chr3	175937782	175937783	rs10936879	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Well-being spectrum (multivariate analysis)	2,083,151 European ancestry individuals	287,239 European ancestry individuals	3q26.32	NR	rs10936879-C	0.351389448348303	6E-9		0.0055977814	[0.0037-0.0075] unit decrease	NR [NR]	N
1927	chr3	175938064	175938065	rs16826757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Positive affect	410,603 European ancestry individuals	NA	3q26.32	NR	rs16826757-A	0.35162520112031	2E-8		0.0067882002	[0.0044-0.0092] unit decrease	NR [NR]	N
1927	chr3	175938064	175938065	rs16826757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Neuroticism	523,783 European ancestry individuals	59,206 European ancestry individuals	3q26.32	NR	rs16826757-A	0.35162520112031	1E-8		0.008846887	[0.0058-0.0119] unit decrease	NR [NR]	N
1927	chr3	175938064	175938065	rs16826757	30643256	Baselmans BML	2019-01-14	Nat Genet	Multivariate genome-wide analyses of the well-being spectrum.	Depressive symptoms	1,067,913 European ancestry individuals	228,033 European ancestry individuals	3q26.32	NR	rs16826757-A	0.35162520112031	1E-8		0.005664143	[0.0037-0.0076] unit decrease	NR [NR]	N
1928	chr3	176030095	176030096	rs6799767	20208534	Rothenberg ME	2010-03-07	Nat Genet	Common variants at 5q22 associate with pediatric eosinophilic esophagitis.	Eosinophilic esophagitis (pediatric)	181 European ancestry cases, 1,974 European ancestry controls	170 European ancestry cases, 1,130 European ancestry controls	3q26.32	NR	rs6799767-?	0.58	4E-7		1.49	[1.18-1.85]	Illumina [~ 550000]	N
1928	chr3	176038091	176038092	rs140627460	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (severe respiratory symptoms vs population)	1,128 European ancestry cases, 679,531 European ancestry controls, 245 Hispanic or Latin American cases, 94,237 Hispanic or Latin American controls, 74 Black or African American cases, 22,383 Black or African American controls	NA	3q26.32		rs140627460-?	NR	5E-7		0.7722549	[0.47-1.07] unit decrease	Illumina [9906551] (imputed)	N
1928	chr3	176096918	176096919	rs301218	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.32	ALADL2, TBL1XR1	rs301218-G	0.6084	1E-10		1.0239831		Affymetrix [11880941] (imputed)	N
1928	chr3	176128883	176128884	rs7617107	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.32	NR	rs7617107-G	0.866	2E-8		0.00883429	[0.0057-0.0119] unit decrease	NR [9732723] (imputed)	N
1930	chr3	176354382	176354383	rs142864944	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	3,806 African American individuals	NA	3q26.32		rs142864944-?	NR	1E-6		0.25	[0.15-0.35] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1930	chr3	176422651	176422652	rs1490075	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	3q26.32	intergenic	rs1490075-?	NR	2E-6	(SF9)			Affymetrix [5476100] (imputed)	N
1932	chr3	176560942	176560943	rs75444093	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Cuneus cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q26.32	NR	rs75444093-?		3E-6				Illumina [4322238] (imputed)	N
1932	chr3	176614989	176614990	rs9879244	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x independent stressful life events interaction (2df test)	4,919 European ancestry individuals	NA	3q26.32	NR	rs9879244-A	0.08416	3E-6		0.0781681	NR unit decrease	Illumina [560351]	N
1932	chr3	176617838	176617839	rs4857800	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	3q26.32	NR	rs4857800-T	NR	8E-6	(GEE model)	0.40043	[0.22-0.58] unit decrease	NR [NR] (imputed)	N
1932	chr3	176635690	176635691	rs76034233	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral occipital cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q26.32	NR	rs76034233-?		4E-6				Illumina [4322238] (imputed)	N
1932	chr3	176638905	176638906	rs79354341	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	3q26.32		rs79354341-?	NR	1E-6		2.174	[1.587-2.979]	Affymetrix [7975321] (imputed)	N
1932	chr3	176641394	176641395	rs74490514	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	3q26.32	TBL1XR1, LINC01209	rs74490514-T	0.038	9E-6				Affymetrix [525356]	N
1933	chr3	176690042	176690043	rs7644028	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	3q26.32		rs7644028-?	NR	3E-6	(clearcell)	1.57		Illumina [11595112] (imputed)	N
1933	chr3	176696021	176696022	rs11716087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q26.32	NR	rs11716087-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
1933	chr3	176715917	176715918	rs1905499	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q26.32		rs1905499-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1933	chr3	176727278	176727279	rs1384974	25574825	Baurecht H	2015-01-08	Am J Hum Genet	Genome-wide comparative analysis of atopic dermatitis and psoriasis gives insight into opposing genetic mechanisms.	Inflammatory skin disease	2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls	NA	3q26.32	TBL1XR1	rs1384974-?	NR	4E-8	(Opposed)			Affymetrix, Illumina [~ 5200000]	N
1934	chr3	176822675	176822676	rs1201289	30120420	Sun R	2018-08-17	Mol Psychiatry	Identification of novel loci associated with infant cognitive ability.	Mental composite score	502 Bangladeshi ancestry infants, 462 Hispanic or Latin American infants	NA	3q26.32	NR	rs1201289-?	NR	8E-6		1.99	[1.12-2.86] unit decrease	Illumina [552487]	N
1934	chr3	176849739	176849740	rs62296577	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q26.32	NR	rs62296577-?	NR	1E-11				Affymetrix [~ 8270000] (imputed)	N
1934	chr3	176849739	176849740	rs62296577	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (adult onset)	33,418 European ancestry cases, 393,186 European ancestry controls	NA	3q26.32	NR	rs62296577-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
1934	chr3	176849739	176849740	rs62296577	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	3q26.32	TBL1XR1	rs62296577-C	0.668	6E-6		1.034	[1.02-1.05]	Affymetrix [9000000] (imputed)	N
1934	chr3	176849739	176849740	rs62296577	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q26.32	TBL1XR1	rs62296577-C	NR	9E-14		1.055	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	3q26.32	TBL1XR1	rs7626218-T	0.39519787828065	6E-10		0.041353416	[0.028-0.054] unit decrease	Affymetrix [35186738] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q26.32	TBL1XR1	rs7626218-A	0.6	4E-15				NR [> 9500000] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q26.32	TBL1XR1	rs7626218-A	0.60342	5E-15		1.0491837	[1.03666653636308-1.0618519958479]	NR [9572556] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q26.32	TBL1XR1, LINC00501, LINC00578, LINC01209, LINC01208, MIR7977	rs7626218-A	0.60482	6E-11		1.043199	[1.03-1.05]	Affymetrix [32463443] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3q26.32	NR	rs7626218-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q26.32	TBL1XR1	rs7626218-A	0.604822	2E-12		1.045502	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3q26.32	TBL1XR1	rs7626218-T	0.394521	1E-8		0.05266197	[0.035-0.071] unit decrease	Affymetrix [7288503] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q26.32	TBL1XR1	rs7626218-?	NR	4E-11		1.051	[1.04-1.06]	Affymetrix [9000000] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q26.32	TBL1XR1	rs7626218-A	NR	5E-15		1.056	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
1934	chr3	176852037	176852038	rs7626218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q26.32		rs7626218-?	NR	5E-12				NR [~ 8900000] (imputed)	N
1934	chr3	176869497	176869498	rs6443429	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q26.32	NR	rs6443429-A	0.346154	2E-8		0.0124435	[0.0081-0.0168] unit increase	NR [NR]	N
1934	chr3	176872189	176872190	rs34024632	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.32	TBL1XR1	rs34024632-C	0.572877	3E-15		0.017808972	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr3	176874379	176874380	rs7617950	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.32		rs7617950-?	NR	2E-15				NR [~ 8900000] (imputed)	N
1934	chr3	176878260	176878261	rs766009815	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q26.32		rs766009815-CA	0.432	5E-13		0.08	[-0.1--0.06] % decrease	Affymetrix [NR] (imputed)	N
1934	chr3	176878261	176878262	rs11303033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q26.32	TBL1XR1	rs11303033-C	0.566252	5E-36		0.028471157	[0.024-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr3	176878261	176878262	rs11303033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q26.32	TBL1XR1	rs11303033-C	0.566388	6E-21		0.0195422	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr3	176878261	176878262	rs11303033	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.32	TBL1XR1	rs11303033-C	0.566391	9E-12		0.015265031	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr3	176887767	176887768	rs1920130	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs1920130-C	0.582289	6E-16				Affymetrix, Illumina [24246363] (imputed)	N
1934	chr3	176890504	176890505	rs6443431	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs6443431-G	0.558682	7E-15				Affymetrix, Illumina [22063850] (imputed)	N
1934	chr3	176904954	176904954	rs11369670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q26.32		rs11369670-CA	NR	2E-16		0.0206	[0.016-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1934	chr3	176904954	176904954	rs11369670	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q26.32		rs11369670-CA	NR	2E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1934	chr3	176904954	176904954	rs11369670	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q26.32	TBL1XR1	rs11369670-CA	0.501057	1E-13		0.01771935	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1934	chr3	176904954	176904954	rs11369670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q26.32	NR	rs11369670-I	0.499459	8E-20		0.019117	[0.015-0.023] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1934	chr3	176904954	176904954	rs11369670	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q26.32	NR	rs11369670-I	0.499483	3E-10		0.013366	[0.0092-0.0175] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1934	chr3	176909660	176909661	rs6804442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.32		rs6804442-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1934	chr3	176910576	176910577	rs12490455	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x cabbage consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	3q26.32		rs12490455-T	NR	6E-6		0.2017	[0.11-0.29] unit decrease	Illumina [285387]	N
1934	chr3	176912898	176912899	rs12493005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.32	NR	rs12493005-C	NR	3E-6				Affymetrix [~ 8270000] (imputed)	N
1934	chr3	176912898	176912899	rs12493005	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Adult onset asthma and/or BMI	33,418 European ancestry cases, 393,186 European ancestry controls, 31,218 European ancestry individuals	NA	3q26.32	NR	rs12493005-C	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
1934	chr3	176913507	176913508	rs58823914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q26.32	Intergenic	rs58823914-A	0.5849	1E-9	(MTAG)	0.011	[0.0075-0.0145] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1934	chr3	176913507	176913508	rs58823914	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q26.32	Intergenic	rs58823914-C	0.4151	8E-11		0.0129	[0.009-0.0168] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1934	chr3	176925739	176925740	rs13077541	33421400	Galata G	2021-01-04	Am J Hum Genet	Genome-wide association study identifies novel susceptibility loci for KIT D816V positive mastocytosis.	Mastocytosis (KIT D816V positive)	414 European ancestry cases, 9,504 European ancestry controls	621 European ancestry cases, 8,456 European ancestry controls	3q26.32	TBL1XR1, LINC00501	rs13077541-G	NR	2E-9		1.3258		Illumina [592007] (imputed)	N
1934	chr3	176927948	176927949	rs73171158	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	3q26.32	TBL1XR1	rs73171158-T	0.467	3E-9		0.1288	[0.086-0.171] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
1935	chr3	176980387	176980388	rs76594178	33235445	Lee YJ	2020-11-17	Int J Chron Obstruct Pulmon Dis	A Genome-Wide Association Study in Early COPD: Identification of One Major Susceptibility Loci.	Early chronic obstructive pulmonary disease in never smokers	38 Korean ancestry cases, 1,778 Korean ancestry controls	NA	3q26.32	TBL1XR1	rs76594178-?	NR	9E-6	(PS matching analysis)	4.89	NR	Affymetrix [345072]	N
1936	chr3	177078633	177078634	rs11915331	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q26.32	NR	rs11915331-G	0.60257	6E-11		0.01236	[0.0087-0.0161] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
1936	chr3	177084325	177084326	rs189177074	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	CAG-977 abundance in stool	5,959 Finnish ancestry individuals	NA	3q26.32		rs189177074-G	0.0121828	1E-9		0.171679	[0.12-0.23] unit increase	Illumina [7980478] (imputed)	N
1936	chr3	177085722	177085723	rs9861140	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q26.32		rs9861140-T	0.453552	3E-9		0.013249877	[0.0089-0.0176] unit decrease	Affymetrix [93095623] (imputed)	N
1936	chr3	177085722	177085723	rs9861140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs9861140-T	0.44637	6E-10				Affymetrix, Illumina [24558453] (imputed)	N
1936	chr3	177085722	177085723	rs9861140	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q26.32	NR	rs9861140-T	0.4553	4E-12		0.013081	[0.0094-0.0168] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
1936	chr3	177095071	177095072	rs12629106	21408207	Chung SA	2011-03-03	PLoS Genet	Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.	Systemic lupus erythematosus	811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls	NA	3q26.32	intergenic	rs12629106-?	0.81	4E-6	(case-only)	1.56	[1.30-1.89]	Illumina [421318] (imputed)	N
1936	chr3	177119316	177119317	rs6791846	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (increased urinary frequency) (time to event)	3,782 European ancestry individuals	NA	3q26.32	NR	rs6791846-?	0.45	5E-7		1.47	[1.26-1.71]	Affymetrix, Illumina [~ 6000000] (imputed)	N
1936	chr3	177138751	177138752	rs2047564	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q26.32		rs2047564-T	NR	2E-9		0.0202	[0.014-0.027] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1936	chr3	177138751	177138752	rs2047564	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q26.32	NR	rs2047564-T	NR	2E-9		0.0217	[0.015-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
1936	chr3	177148590	177148591	rs9850315	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	3q26.32	U8	rs9850315-C	0.02	3E-7		2.43	[1.73-3.41]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1936	chr3	177176515	177176516	rs6799682	25390645	Otowa T	2014-11-12	PLoS One	Genome-wide and gene-based association studies of anxiety disorders in European and African American samples.	Anxiety disorder	324 African American cases, 273 African American controls, 757 European ancestry cases, 940 European ancestry controls	NA	3q26.32	intergenic	rs6799682-A		8E-6	(AA, case-control analysis)	1.79	[NR]	Affymetrix [up to 730090]	N
1936	chr3	177189992	177189993	rs11705870	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.32	NR	rs11705870-?	NR	3E-7		0.0088756	[0.0055-0.0123] unit increase	Affymetrix [805426] (imputed)	N
1937	chr3	177215226	177215227	rs12632195	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3q26.32	NR	rs12632195-?	NR	3E-8		5.565	NR z score increase	Illumina [at least 830937] (imputed)	N
1937	chr3	177228978	177228979	rs1353899	23743675	Kapoor M	2013-06-07	Hum Genet	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Alcohol consumption	2,322 European ancestry individuals from 118 families, 2,593 European ancestry individuals		3q26.32	intergenic	rs1353899-?	0.22	4E-6		0.09	[0.051-0.129] unit decrease	Illumina [4058415] (imputed)	N
1937	chr3	177291696	177291697	rs644695	20038947	Shyn SI	2009-12-29	Mol Psychiatry	Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies.	Major depressive disorder (broad)	3,957 European ancestry cases, 3,428 European ancestry controls	NA	3q26.32	NR	rs644695-A	0.88	5E-6		1.35	[NR]	Affymetrix, Perlegen [2391203] (imputed)	N
1937	chr3	177295214	177295215	rs552305	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q26.32	NR	rs552305-T	0.3995	4E-10	(Lateral Occipital)	17.187178	[11.81-22.56] unit increase	Affymetrix, Illumina [NR]	N
1937	chr3	177296447	177296448	rs13084960	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q26.32	LINC00578	rs13084960-?		1E-11	(Superior temporal)			Affymetrix, Illumina [NR] (imputed)	N
1937	chr3	177299739	177299739	rs35770472	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q26.32	NR	rs35770472-?	NR	2E-8	(left lateral occipital)			NR [9227495] (imputed)	N
1937	chr3	177301991	177301992	rs2133593	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Chin dimples	58,032 European ancestry cases, 13,457 European ancestry controls	NA	3q26.32	TBL1XR1, KCNMB2	rs2133593-?	NR	7E-11		1.1061947	[1.07-1.14]	Illumina [13537761] (imputed)	N
1937	chr3	177304297	177304298	rs7620503	23291589	Lu Y	2013-01-06	Nat Genet	Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus.	Corneal structure	13,057 European ancestry individuals, 2,538 Indian ancestry individuals, 2,542 Malay ancestry individuals, 1,883 Chinese ancestry individuals	NA	3q26.32	TBL1XR1, KCNMB2	rs7620503-T	0.39	1E-8		0.06	[0.04-0.08] unit decrease	Affymetrix, Illumina [~ 1000000] (imputed)	N
1937	chr3	177305704	177305705	rs13077994	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q26.32		rs13077994-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1937	chr3	177307641	177307642	rs7637965	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q26.32		rs7637965-G	0.38	1E-49		14.81	z score increase	Affymetrix [9061022] (imputed)	N
1937	chr3	177307641	177307642	rs7637965	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q26.32	NR	rs7637965-G	0.3909	1E-17				NR [9056863] (imputed)	N
1937	chr3	177309532	177309533	rs13079175	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3q26.32	TBL1XR1	rs13079175-?	NA	4E-16		1.97	[1.5-2.44] unit increase	Affymetrix [5541230] (imputed)	N
1937	chr3	177310444	177310445	rs4857714	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Central corneal thickness	16,204 European ancestry individuals	NA	3q26.32	TBL1XR1	rs4857714-T	0.4	4E-9		2.342	[1.56-3.12] ?m decrease	Affymetrix, Illumina [9249813] (imputed)	N
1937	chr3	177310992	177310993	rs35614773	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q26.32	NR	rs35614773-?		4E-15				NR [7428630] (imputed)	N
1937	chr3	177316084	177316085	rs4241484	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q26.32	NR	rs4241484-C	0.4127	1E-17				NR [9056863] (imputed)	N
1937	chr3	177316084	177316085	rs4241484	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3q26.32	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs4241484-?		4E-16				NR [7428630] (imputed)	N
1937	chr3	177318016	177318017	rs74886871	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00578	rs74886871-?	NR	2E-12		3.02107	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1937	chr3	177318016	177318017	rs74886871	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00578	rs74886871-?	NR	1E-8	(male)	3.2264	[NR] unit decrease	Affymetrix [NR] (imputed)	N
1937	chr3	177321474	177321475	rs11716881	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q26.32		rs11716881-G	0.41	4E-123		23.6	z score increase	Affymetrix [9061022] (imputed)	N
1937	chr3	177321474	177321475	rs11716881	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	8,072 individuals	NA	3q26.32		rs11716881-G	0.41	5E-7				NR [13131314] (imputed)	N
1937	chr3	177321474	177321475	rs11716881	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q26.32		rs11716881-G	0.41	2E-63		16.8	z score increase	Affymetrix [9061022] (imputed)	N
1937	chr3	177322866	177322867	rs6766914	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3q26.32	NR	rs6766914-?		5E-8	(Superior longitudinal fasciculus)			NR [8955960] (imputed)	N
1938	chr3	177342467	177342468	rs1875102	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	3q26.32	WLS	rs1875102-?		9E-9				NR [7428630] (imputed)	N
1938	chr3	177342467	177342468	rs1875102	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q26.32	VANGL2	rs1875102-?		3E-8				NR [7428630] (imputed)	N
1938	chr3	177435118	177435119	rs7634107	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.32		rs7634107-?	NR	1E-9				NR [~ 8900000] (imputed)	N
1939	chr3	177485869	177485870	rs7430456	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls		NR	rs7430456-G	0.3718	5E-6	(EA)	0.0292	[0.017-0.042] unit decrease	Illumina [~ 11800000] (imputed)	N
1939	chr3	177507405	177507406	rs9811323	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q26.32		rs9811323-C	NR	2E-8		0.0148	[0.0097-0.0199] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
1939	chr3	177564034	177564035	rs1369564	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	3q26.32	NR	rs1369564-T		8E-6		0.2428	[0.14-0.35] unit increase	Illumina [12770451] (imputed)	N
1939	chr3	177564034	177564035	rs1369564	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	3q26.32	NR	rs1369564-T		3E-6		0.2272	[0.13-0.32] unit increase	Illumina [12770451] (imputed)	N
1939	chr3	177580973	177580974	rs1369567	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q26.32	NR	rs1369567-?	NR	1E-6				Illumina [at least 7383741] (imputed)	N
1939	chr3	177590408	177590409	rs74793292	28203683	Heit JA	2017-02-16	Thromb Haemost	Identification of unique venous thromboembolism-susceptibility variants in African-Americans.	Venous thromboembolism adjusted for sickle cell variant rs77121243-T	393 African American cases, 4,941 African American controls.	NR	3q26.32	LINC00578	rs74793292-?	0.89	2E-6		2.0576131		Affymetrix, Illumina [14074516] (imputed)	N
1939	chr3	177596988	177596989	rs7612209	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q26.32	AC007953.21	rs7612209-?	0.4012	4E-6	(IED)			Illumina [475971]	N
1941	chr3	177766463	177766464	rs7634528	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q26.32	intergenic	rs7634528-?	0.044	1E-6			[NR]	Affymetrix, Illumina [152234]	N
1941	chr3	177789209	177789210	rs149426421	33048379	Richard MA	2020-10-13	Cancer	Genetic variation in the body mass index of adult survivors of childhood acute lymphoblastic leukemia: A report from the Childhood Cancer Survivor Study and the St. Jude Lifetime Cohort.	BMI in adult survivors of childhood acute lymphoblastic leukemia treated with cranial radiation	962 European ancestry individuals	260 individuals	3q26.32	NR	rs149426421-T	NR	3E-6		5.0	[2.84-7.16] unit increase	Illumina [> 9000000] (imputed)	N
1941	chr3	177802196	177802197	rs6785366	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	3q26.32	intergenic	rs6785366-T	0.03	5E-6		0.42	[0.24-0.6] unit increase	Illumina [6380737] (imputed)	N
1941	chr3	177819410	177819411	rs13096683	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.32	NR	rs13096683-?	NR	7E-26				Affymetrix [NR]	N
1941	chr3	177855631	177855632	rs9883878	23829686	Ding L	2013-07-05	Hum Genomics	Rank-based genome-wide analysis reveals the association of ryanodine receptor-2 gene variants with childhood asthma among human populations.	Asthma (childhood onset)	429 European ancestry affected offspring trios	52 African American affected offspring trios, 46 Hispanic affected offspring trios	3q26.32	intergenic	rs9883878-?	NR	1E-6				Affymetrix [786195]	N
1941	chr3	177863107	177863108	rs2902413	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	3q26.32	intergenic	rs2902413-T	0.02	2E-6	(male)	0.651	[0.38-0.92] unit increase	Illumina [6380737] (imputed)	N
1942	chr3	177896845	177896846	rs10155045	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.32	NR	rs10155045-?	NR	2E-6				Affymetrix [NR]	N
1944	chr3	178160567	178160568	rs12492269	26545630	Deming Y	2015-09-25	Neurobiol Aging	A potential endophenotype for Alzheimer's disease: cerebrospinal fluid clusterin.	Plasma clusterin levels	521 Alzheimer's disease cases, 297 controls	NA	3q26.32	LINC01014	rs12492269-?		2E-6				Illumina [5970354] (imputed)	N
1944	chr3	178174943	178174944	rs2291479	29317602	Hall LS	2018-01-10	Transl Psychiatry	Genome-wide meta-analyses of stratified depression in Generation Scotland and UK Biobank.	Recurrent major depressive disorder	7,345 European ancestry female cases, 32,211 European ancestry female controls	NA	3q26.32	intergenic	rs2291479-A	0.4	1E-6		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [7105178] (imputed)	N
1944	chr3	178178719	178178720	rs2010949	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of aspartame	1,757 European ancestry twins	NA	3q26.32	RP11-385J1.3	rs2010949-C	0.1	6E-6		0.28	[0.16-0.4] unit increase	Illumina [4381914] (imputed)	N
1944	chr3	178257561	178257562	rs9637454	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	3q26.32	KCNMB2	rs9637454-A	0.2791	7E-8		0.5006	[0.32-0.68] unit increase	Affymetrix, Illumina [NR] (imputed)	N
1945	chr3	178313692	178313693	rs17650998	32308125	Wolking S	2020-04-20	Pharmacogenomics	Pharmacoresponse in genetic generalized epilepsy: a genome-wide association study.	Response to lamotrigine in genetic generalized epilepsy	137 European ancestry responders, 250 European ancestry non-responders	NA	3q26.32	KCNMB2	rs17650998-?	NR	9E-7				Affymetrix, Illumina [at least 3287443] (imputed)	N
1945	chr3	178314123	178314124	rs6766905	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.32	NR	rs6766905-A	0.02091	9E-9	(PON1)	0.12	NR unit increase	Illumina [1671387] (imputed)	N
1945	chr3	178341581	178341582	rs2054399	22688191	Bergen SE	2012-06-12	Mol Psychiatry	Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder.	Bipolar disorder and schizophrenia	2,111 European ancestry schizophrenia cases, 836 European ancestry bipolar disorder cases, 2,535 European ancestry controls	NA	3q26.32	KCNMB2	rs2054399-?	NR	1E-6		1.22	[NR]	Affymetrix [745006]	N
1945	chr3	178356236	178356237	rs7623291	28468790	Agopian AJ	2017-06-01	Circ Cardiovasc Genet	Genome-Wide Association Studies and Meta-Analyses for Congenital Heart Defects.	Left ventricular obstructive tract defect (inherited effect)	247 European ancestry trios, 70 non-European ancestry trios, 192 European and other ancestry trios	NA	3q26.32	KCNMB2, AF279780, AY769439	rs7623291-?	NR	6E-6		1.5704628	[1.29-1.91]	Illumina [at least 4483243] (imputed)	N
1946	chr3	178399550	178399551	rs13100616	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q26.32	KCNMB2	rs13100616-?		9E-7				Illumina [859311]	N
1946	chr3	178406163	178406164	rs79324256	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	3q26.32	KCNMB2	rs79324256-C	NR	9E-7		2.98		Illumina [2711511] (imputed)	N
1946	chr3	178407145	178407146	rs112504494	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	3q26.32	Intergenic	rs112504494-A	NR	9E-7		2.98		Illumina [2711511] (imputed)	N
1946	chr3	178407846	178407847	rs61606793	30145303	Kimbrel NA	2018-07-17	Psychiatry Res	A genome-wide association study of suicide attempts and suicidal ideation in U.S. military veterans.	Suicide attempts	52 European ancestry cases, 70 cases, 680 European ancestry controls, 767 controls	NA	3q26.32	Intergenic	rs61606793-G	NR	1E-6		2.96		Illumina [2711511] (imputed)	N
1946	chr3	178429938	178429939	rs9290663	19684603	Trevino LR	2009-08-16	Nat Genet	Germline genomic variants associated with childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	317 European ancestry cases, 17,958 European ancestry controls	NA	3q26.32	KCNMB2	rs9290663-T	0.13	6E-6		1.58	[1.20-1.90]	Affymetrix [307944]	N
1946	chr3	178469931	178469932	rs4260410	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q26.32	NR	rs4260410-T	0.332	5E-8		1.035	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1946	chr3	178504266	178504267	rs115510347	28084903	Hallberg P	2017-01-13	Pharmacogenomics	Genetic variants associated with angiotensin-converting enzyme inhibitor-induced cough: a genome-wide association study in a Swedish population.	Cough in response to angiotensin-converting enzyme inhibitor drugs	123 European ancestry cases, 1,345 European and unknown ancestry controls, 1 Middle Eastern ancestry case	NR	3q26.32	KCNMB2	rs115510347-?	NR	8E-7		6.45	[3.07-13.53]	Illumina [8600000] (imputed)	N
1947	chr3	178635291	178635292	rs11715386	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.32	ZMAT3	rs11715386-?	NR	9E-6	(serotonin)	0.24094592	[0.13-0.35] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1948	chr3	178701522	178701523	rs9832291	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q26.32	ZMAT3, PIK3CA	rs9832291-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
1948	chr3	178718994	178718995	rs4377525	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.32		rs4377525-C	0.756023	3E-14		0.020028446	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
1948	chr3	178720733	178720734	rs56057195	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q26.32		rs56057195-C	NR	2E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1948	chr3	178721372	178721373	rs11711320	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q26.32	NR	rs11711320-C	0.240837	6E-20		0.020382	[0.016-0.025] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
1948	chr3	178725445	178725446	rs56115013	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q26.32		rs56115013-C	0.756639	3E-27		0.02817052	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
1948	chr3	178738431	178738432	rs6790867	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs6790867-T	0.243404	8E-19				Affymetrix, Illumina [17210439] (imputed)	N
1948	chr3	178740421	178740422	rs7641761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q26.32		rs7641761-A	NR	3E-19		0.0217	[0.017-0.026] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1948	chr3	178740421	178740422	rs7641761	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q26.32		rs7641761-A	NR	4E-22		0.0234	[0.019-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
1948	chr3	178740421	178740422	rs7641761	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q26.32		rs7641761-T	0.302	3E-17		0.1	[-0.12--0.08] % decrease	Affymetrix [NR] (imputed)	N
1948	chr3	178740421	178740422	rs7641761	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q26.32	ZMAT3	rs7641761-A	0.6978	3E-10		0.02431824	[0.017-0.032] unit increase	Affymetrix [~ 2500000] (imputed)	N
1948	chr3	178742689	178742690	rs4607155	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q26.32	NR	rs4607155-C	0.75248	3E-41		0.028344	[0.024-0.032] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
1948	chr3	178748267	178748268	rs6794165	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs6794165-A	0.795453	2E-42				Affymetrix, Illumina [24588908] (imputed)	N
1948	chr3	178749029	178749030	rs753173864	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q26.32	ZMAT3	rs753173864-G	0.1486	6E-9		0.02898656	[0.019-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
1948	chr3	178751192	178751193	rs9835765	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q26.32	ZMAT3	rs9835765-A	0.750837	5E-15		0.020099651	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1948	chr3	178751344	178751345	rs11305804	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q26.32	ZMAT3	rs11305804-G	0.751059	3E-15		0.020997161	[0.016-0.026] unit increase	Affymetrix [93095623] (imputed)	N
1948	chr3	178758689	178758691	rs138810286	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q26.32		rs138810286-C	NR	2E-19		0.0211	[0.017-0.026] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
1948	chr3	178768010	178768011	rs9831543	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q26.32		rs9831543-A	0.306	1E-14				Affymetrix [10369434] (imputed)	N
1948	chr3	178768010	178768011	rs9831543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q26.32	ZMAT3	rs9831543-G	0.694416	1E-20		0.0262125	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
1948	chr3	178768010	178768011	rs9831543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q26.32	NR	rs9831543-G	0.694812	3E-37		0.025072	[0.021-0.029] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1948	chr3	178774175	178774176	rs4632588	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q26.32	NR	rs4632588-G	0.747564	2E-38		0.028604	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
1948	chr3	178778029	178778030	rs74638319	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q26.32	ZMAT3	rs74638319-A	0.550577	3E-14		0.017251808	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
1948	chr3	178782020	178782021	rs4955793	23726511	Xie P	2013-05-28	Biol Psychiatry	Genome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.	Post-traumatic stress disorder (asjusted for relatedness)	up to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls	NA	3q26.32	ZMAT3	rs4955793-?	NR	2E-6	(Whole cohort; AA)			Illumina [up to 871502]	N
1949	chr3	178786875	178786875	rs11428326	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.32	ZMAT3	rs11428326-GT	0.747802	1E-21		0.024791043	[0.02-0.03] unit increase	Affymetrix [93095623] (imputed)	N
1949	chr3	178801737	178801738	rs73187218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.32		rs73187218-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1949	chr3	178852706	178852707	rs2699907	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q26.32	RP11-360P21.2	rs2699907-T	0.243803	4E-18		0.023530042	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.012641	5E-9		0.06517483	[0.043-0.087] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.012632	2E-16		0.090674	[0.069-0.112] unit increase	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.012639	1E-11		0.07720665	[0.055-0.099] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.012648	1E-10		0.07388265	[0.051-0.096] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.01263	4E-23		0.127048	[0.11-0.15] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.32	PIK3CA	rs553084547-T	0.012624	2E-19		0.100679055	[0.079-0.123] unit decrease	Affymetrix [93095623] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs553084547-T	0.0121545	4E-13				Affymetrix, Illumina [24332387] (imputed)	N
1949	chr3	178866241	178866242	rs553084547	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q26.32	NR	rs553084547-T	0.012528	4E-15		0.076101	[0.057-0.095] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
1949	chr3	178866407	178866408	rs2699887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs2699887-T	0.21391	2E-41				Affymetrix, Illumina [24246363] (imputed)	N
1949	chr3	178866407	178866408	rs2699887	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.32	NR	rs2699887-T	0.212193	1E-42				Affymetrix, Illumina [20825802] (imputed)	N
1949	chr3	178883907	178883908	rs1517586	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q26.32	PIK3CA	rs1517586-?	NR	3E-8		0.0457	[0.03-0.062] unit decrease novel	Illumina [6108953] (imputed)	N
1949	chr3	178884336	178884337	rs2699905	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.32		rs2699905-?	NR	1E-31				NR [~ 8900000] (imputed)	N
1949	chr3	178887631	178887632	rs78163832	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q26.32		rs78163832-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1949	chr3	178911533	178911534	rs2677770	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3q26.32	NR	rs2677770-T	0.925495	4E-10		0.04844	[0.033-0.064] SD units increase	Affymetrix, Illumina [16286228] (imputed)	N
1950	chr3	178958583	178958584	rs397991768	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q26.32		rs397991768-G	0.076045	1E-9		0.0422398	[0.029-0.056] unit decrease	Illumina [13476299] (imputed)	N
1950	chr3	178983059	178983060	rs115965187	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	3q26.32	NR	rs115965187-?	NR	6E-6				Affymetrix [5486770] (imputed)	N
1950	chr3	179039730	179039731	rs78940746	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	3q26.33	MFN1, ZNF639	rs78940746-?	NR	3E-6		0.1018	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
1951	chr3	179058548	179058549	rs185157360	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (normal type)	92 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	3q26.33	ZNF639, MFN1	rs185157360-G	0.013	5E-7		9.49	[3.95-22.82]	Illumina [7206774] (imputed)	N
1951	chr3	179066303	179066304	rs13089906	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q26.33	MFN1	rs13089906-C	0.042222	5E-9		0.03305372	[0.022-0.044] unit increase	Affymetrix [93095623] (imputed)	N
1951	chr3	179070453	179070454	rs6804758	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.33	NR	rs6804758-?	NR	9E-8				Affymetrix [NR]	N
1951	chr3	179152840	179152841	rs13088724	35023831	Chong M	2022-01-13	Elife	GWAS and ExWAS of blood Mitochondrial DNA copy number identifies 71 loci and highlights a potential causal role in dementia.	Mitochondrial DNA copy number	395,718 British, Irish, Other White, South Asian, African ancestry individuals	NA	3q26.33	NR	rs13088724-A	0.138578	8E-12		0.0175	[0.012-0.023] unit increase	Affymetrix [23037915] (imputed)	N
1951	chr3	179168461	179168462	rs4855074	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q26.33	GNB4	rs4855074-T	0.14	3E-9	(EA)	1.07	[1.04-1.09]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1951	chr3	179169229	179169230	rs7611674	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	NA	3q26.33	RP11-145M9.2	rs7611674-T	0.8038	2E-12		0.1576	[0.11-0.2] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1951	chr3	179170493	179170494	rs4855075	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Atrial fibrillation/atrial flutter	29,212 European ancestry cases, 400,539 European ancestry controls, 4,150 East Asian ancestry cases, 155,540 East Asian ancestry controls	NA	3q26.33		rs4855075-T	NR	2E-9		0.0844	[0.057-0.112] unit increase	Affymetrix, Illumina [25830072] (imputed)	N
1951	chr3	179170493	179170494	rs4855075	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q26.33	GNB4	rs4855075-T	0.14	4E-9		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 12149979] (imputed)	N
1951	chr3	179172978	179172979	rs7612445	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3q26.33	GNB4	rs7612445-T	0.188	5E-9		1.05	[1.03-1.07]	Illumina [34740186] (imputed)	N
1951	chr3	179172978	179172979	rs7612445	29769521	Ramirez J	2018-05-16	Nat Commun	Thirty loci identified for heart rate response to exercise and recovery implicate autonomic nervous system.	Resting heart rate	67,062 European ancestry individuals	NA	3q26.33	GNB4	rs7612445-G	0.811963	3E-6		0.388187	[0.23-0.55] unit increase	Affymetrix [~ 7800000] (imputed)	N
1951	chr3	179172978	179172979	rs7612445	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	3q26.33	GNB4	rs7612445-T	0.19	2E-24		0.4276	[0.35-0.51] unit decrease	Affymetrix [19941912] (imputed)	N
1951	chr3	179172978	179172979	rs7612445	23583979	den Hoed M	2013-04-14	Nat Genet	Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.	Heart rate	85,787 European ancestry individuals, 6,568 Indian Asian ancestry indiviudals	88,823 European ancestry individuals	3q26.33	GNB4	rs7612445-G	0.816	2E-14		0.358	[0.24-0.48] unit increase	Affymetrix, Illumina [2516789] (imputed)	N
1952	chr3	179179781	179179782	rs7617318	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.33	NR	rs7617318-T	0.02091	2E-8	(HIBCH)	0.3616	NR unit increase	Illumina [1671387] (imputed)	N
1952	chr3	179184196	179184197	rs6784988	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.33	NR	rs6784988-?	NR	3E-6		4.647	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1953	chr3	179336256	179336257	rs4147793	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q26.33		rs4147793-C	0.012291	2E-9		0.0974249	[0.065-0.129] unit increase	Illumina [13476266] (imputed)	N
1954	chr3	179568095	179568096	rs112284299	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Total cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3q26.33	PEX5L	rs112284299-?	NR	1E-7	(AA)	0.065	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1954	chr3	179568095	179568096	rs112284299	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	LDL cholesterol change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		3q26.33	PEX5L	rs112284299-?	NR	7E-7	(AA)	0.107	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
1955	chr3	179661317	179661318	rs7630877	21490949	Sim X	2011-04-07	PLoS Genet	Transferability of type 2 diabetes implicated loci in multi-ethnic cohorts from Southeast Asia.	Type 2 diabetes	2,010 Chinese ancestry cases, 1,945 Chinese ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 977 Asian Indian ancestry cases, 1,169 Asian Indian ancestry controls	NA	3q26.33	PEX5L	rs7630877-A	0.17	7E-6	(Chinese)	1.32	[1.17-1.49]	Illumina [~ 2000000] (imputed)	N
1955	chr3	179664101	179664102	rs9842133	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3q26.33	PEX5L	rs9842133-T	0.66	4E-12	(carnitine)	0.006	[0.004-0.008] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1955	chr3	179692750	179692751	rs6787514	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.33	NR	rs6787514-?	NR	6E-6		4.535	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1955	chr3	179692750	179692751	rs6787514	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	3q26.33	NR	rs6787514-?	NR	8E-6		0.0343	[0.019-0.049] unit decrease	Illumina [at least 560000] (imputed)	N
1956	chr3	179742170	179742171	rs139944141	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3q26.33	NA	rs139944141-C		2E-9		0.0122989	[0.0083-0.0163] unit increase	Illumina [13288253] (imputed)	N
1956	chr3	179782261	179782262	rs76882575	28235828	Traglia M	2017-04-03	G3 (Bethesda)	Independent Maternal and Fetal Genetic Effects on Midgestational Circulating Levels of Environmental Pollutants.	Midgestational circulating levels of PBDEs (fetal genetic effect)	764 fetuses	NA	3q26.33	PEX5L	rs76882575-?		8E-7	(BDE-28)	0.49	[0.29-0.69] unit increase	Affymetrix [629686]	N
1956	chr3	179801913	179801914	rs191580074	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3q26.33	PEX5L	rs191580074-A	0.0154	2E-6		1.32287	[1.21-1.44]	NR [9372253] (imputed)	N
1956	chr3	179819446	179819447	rs17693325	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q26.33	NR	rs17693325-?	NR	5E-10				Affymetrix [NR]	N
1957	chr3	179831732	179831733	rs7652876	33045005	Vogelezang S	2020-10-12	PLoS Genet	Novel loci for childhood body mass index and shared heritability with adult cardiometabolic traits.	Childhood body mass index	39,620 European ancestry individuals	NA	3q26.33	PEX5L	rs7652876-A	0.25	3E-6		0.042	[0.024-0.06] unit increase	Affymetrix, Illumina [8227808] (imputed)	N
1959	chr3	180116562	180116563	rs6803803	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	3q26.33	PEX5L, TTC14	rs6803803-?		2E-6	(AIRg)	17.53	[10.24-24.82] unit increase	Illumina [693128]	N
1959	chr3	180136585	180136586	rs7643043	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.33	NR	rs7643043-?	NR	8E-6		0.0079836	[0.0045-0.0115] unit decrease	Affymetrix [805426] (imputed)	N
1961	chr3	180369749	180369750	rs7633995	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q26.33	CCDC39	rs7633995-A	0.899338	5E-9		0.0144818	[0.0096-0.0193] unit decrease	Affymetrix [12370749]	N
1961	chr3	180396499	180396500	rs13083968	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q26.33	FXR1	rs13083968-?	NR	8E-6	(PC 36:3)	0.19071975	[0.11-0.27] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1961	chr3	180441171	180441172	rs13069244	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.33	CCDC39	rs13069244-A	0.078	1E-10				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1961	chr3	180441171	180441172	rs13069244	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3q26.33	CCDC39	rs13069244-A	0.078	8E-7		0.061	[0.037-0.085] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1961	chr3	180441171	180441172	rs13069244	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q26.33	CCDC39	rs13069244-A	0.074	3E-6		0.026	[0.014-0.038] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1961	chr3	180441171	180441172	rs13069244	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q26.33	CCDC39	rs13069244-A	0.078	6E-10		0.031	[0.021-0.041] kg/m2 increase	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
1961	chr3	180446248	180446249	rs6443703	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.33	Intergenic	rs6443703-A	0.2794	4E-8	(MTAG)	0.008	[0.0051-0.0109] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1962	chr3	180550701	180550702	rs6782299	19571811	Purcell SM	2009-07-01	Nature	Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.	Schizophrenia	3,322 European ancestry cases, 3,587 European ancestry controls	4,692 European ancestry cases, 15,493 European ancestry controls		FXR1	rs6782299-T	0.73	1E-7		1.1		Affymetrix [739995]	N
1962	chr3	180551213	180551214	rs1879248	21926974	Ripke S	2011-09-18	Nat Genet	Genome-wide association study identifies five new schizophrenia loci.	Schizophrenia	9,394 European ancestry cases, 12,462 European ancestry controls	8,442 European ancestry cases, 21,397 European ancestry controls	3q26.33	NR	rs1879248-?	NR	7E-6		1.07	[1.04-1.11]	Affymetrix, Illumina [1252901] (imputed)	N
1962	chr3	180577421	180577422	rs2337744	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	3q26.33	NA	rs2337744-G		5E-8		0.0109431	[0.007-0.0149] unit increase	Illumina [13288253] (imputed)	N
1962	chr3	180587011	180587012	rs13097891	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in hypertension	398 Korean ancestry cases, 15,909 Korean ancestry controls	NA	3q26.33		rs13097891-C	0.08575	7E-6		1.621	[1.31199999999999-2.002]	Affymetrix [7975321] (imputed)	N
1962	chr3	180590296	180590297	rs34312605	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	65,967 individuals	NA	3q26.33	NR	rs34312605-?		1E-8				NR [8377093]	N
1962	chr3	180599317	180599318	rs13096210	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	3q26.33		rs13096210-?	NR	1E-9		0.02	NR unit decrease	NR [4425810] (imputed)	N
1962	chr3	180599317	180599318	rs13096210	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.33	NR	rs13096210-C	NR	4E-11		1.1363636	[NR]	Illumina [7158791] (imputed)	N
1962	chr3	180608916	180608917	rs62291402	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q26.33		rs62291402-G	0.803	2E-10		0.009	[0.007-0.011] unit decrease	NR [NR] (imputed)	N
1963	chr3	180623254	180623255	rs34796896	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	3q26.33		rs34796896-?	NR	3E-9		0.0179	NR unit decrease	NR [4484088] (imputed)	N
1963	chr3	180623254	180623255	rs34796896	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	3q26.33	NR	rs34796896-?	NR	1E-10				Illumina [up to 5582932] (imputed)	N
1963	chr3	180623254	180623255	rs34796896	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.33	FXR1	rs34796896-G	NR	1E-9	(EA)	1.086	[1.06-1.11]	Illumina [6627481] (imputed)	N
1963	chr3	180623254	180623255	rs34796896	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	3q26.33	DNAJC19, FXR1, LOC101928882, SOX2-OT	rs34796896-?	NR	3E-12		1.087	[1.06-1.11]	Illumina [8000000] (imputed)	N
1963	chr3	180627302	180627303	rs496250	32752121	Nedoszytko B	2020-07-31	Int J Mol Sci	Results from a Genome-Wide Association Study (GWAS) in Mastocytosis Reveal New Gene Polymorphisms Associated with WHO Subgroups.	Mastocytosis	234 European ancestry cases, 5,606 European ancestry controls	NA	3q26.33	FXR1	rs496250-T	0.1323	3E-8		1.927	[1.69-2.16]	Illumina [281811]	N
1963	chr3	180651869	180651870	rs13097727	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Schizophrenia (MTAG)	67,764 individuals	NA	3q26.33	NR	rs13097727-?		3E-8				NR [8377093]	N
1963	chr3	180658050	180658051	rs768882952	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.33	NR	rs768882952-?	NR	7E-6		0.0075016	[0.0042-0.0108] unit decrease	Affymetrix [805426] (imputed)	N
1963	chr3	180664669	180664670	rs519618	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.33	NR	rs519618-?	NR	6E-7		5.006	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1963	chr3	180667564	180667565	rs1805576	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Eating disorder in bipolar disorder	184 European ancestry cases, 2,006 European ancestry controls	NA	3q26.33	FXR1	rs1805576-G	0.21	4E-6		1.71	[NR]	Affymetrix [703012]	N
1963	chr3	180667564	180667565	rs1805576	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	3q26.33	FXR1	rs1805576-G	0.21	1E-6		1.79	[NR]	Affymetrix [703012]	N
1963	chr3	180687597	180687598	rs13076861	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	3q26.33	FXR1	rs13076861-?	NR	8E-9		0.014693938	[0.0097-0.0197] unit increase	NR [7306098]	N
1963	chr3	180691033	180691034	rs115732722	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.33		rs115732722-A	0.0101	1E-8		0.0415	[0.027-0.056] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1963	chr3	180734184	180734185	rs77025239	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	3q26.33		rs77025239-?	NR	4E-9				NR [~ 8900000] (imputed)	N
1963	chr3	180734184	180734185	rs77025239	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.33		rs77025239-A	0.1559	5E-13		0.014	[0.01-0.018] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1963	chr3	180734184	180734185	rs77025239	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.33	Intergenic	rs77025239-A	0.1559	6E-13	(MTAG)	0.013	[0.0095-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1964	chr3	180752137	180752138	rs13096176	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	3q26.33	NR	rs13096176-?	NR	3E-9		1.1235955		Affymetrix, Illumina [9938587] (imputed)	N
1964	chr3	180773879	180773880	rs1805203	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.33	NR	rs1805203-G	NR	7E-6		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1964	chr3	180775133	180775134	rs1805207	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.33		rs1805207-?	NR	1E-8				NR [~ 8900000] (imputed)	N
1964	chr3	180781099	180781100	rs4854912	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Bipolar disorder and eating disorder	184 European ancestry cases with bipolar disorder and eating disorder, 1,370 European ancestry controls	NA	3q26.33	SOX2-OT	rs4854912-T	0.19	9E-8		1.91	[NR]	Affymetrix [703012]	N
1964	chr3	180785696	180785697	rs2216427	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	3q26.33	NR	rs2216427-C	0.6527	2E-8		1.036	[1.02-1.05]	Affymetrix, Illumina [NR] (imputed)	N
1964	chr3	180791550	180791551	rs2216428	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.33	NR	rs2216428-?	NR	8E-7		4.936	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1964	chr3	180798726	180798727	rs13086738	26433762	Liu X	2015-09-25	J Affect Disord	A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region.	Eating disorder in bipolar disorder	184 European ancestry cases, 2,006 European ancestry controls	NA	3q26.33	SOX2-OT	rs13086738-G	0.20	2E-7		1.84	[NR]	Affymetrix [703012]	N
1964	chr3	180830909	180830910	rs9859557	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.33	DNAJC19	rs9859557-A	NR	9E-9	(EA)	1.0805	[1.05-1.11]	Illumina [6627481] (imputed)	N
1964	chr3	180830909	180830910	rs9859557	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.33	DNAJC19	rs9859557-A	NR	2E-11		1.085	[1.06-1.11]	Illumina [6627481] (imputed)	N
1964	chr3	180830909	180830910	rs9859557	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q26.33	DNAJC19, SOX2OT	rs9859557-A	NR	6E-14		1.094	[1.07-1.12]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1964	chr3	180838643	180838644	rs4855019	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q26.33	NR	rs4855019-?	NR	6E-15		1.0927528	[1.07-1.12]	Affymetrix, Illumina [12447948] (imputed)	N
1965	chr3	180931394	180931395	rs2718791	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.33	NR	rs2718791-C	0.352	1E-9		0.00695152	[0.0047-0.0092] unit decrease	NR [9732723] (imputed)	N
1965	chr3	180931394	180931395	rs2718791	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.33		rs2718791-T	0.6452	4E-8		0.0081	[0.0052-0.011] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1965	chr3	180931398	180931399	rs2567646	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q26.33	NR	rs2567646-?	NR	3E-7		5.137	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1965	chr3	180993423	180993424	rs12632136	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q26.33	NR	rs12632136-?	NR	9E-6		0.007727	[0.0043-0.0111] unit decrease	Affymetrix [805426] (imputed)	N
1966	chr3	181035369	181035370	rs1878874	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.33	NR	rs1878874-T	NR	1E-7		1.0638298	[NR]	Illumina [7158791] (imputed)	N
1966	chr3	181090034	181090035	rs35589824	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.33	NR	rs35589824-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1966	chr3	181130271	181130272	rs17537703	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs anorexia nervosa (ordinary least squares (OLS))	40,675 schizophrenia cases, 16,992 anorexia nervosa cases	NA	3q26.33		rs17537703-?	NR	2E-8		0.0187	NR unit increase	NR [4425810] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q26.33	NR	rs9841616-?	NR	5E-10		1.0818764	[1.06-1.11]	Affymetrix, Illumina [12447948] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.33	RPL7AP25	rs9841616-T	NR	7E-8		1.0729614	[1.05-1.1]	Illumina [6627481] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	3q26.33	RPL7AP25	rs9841616-T	NR	4E-7	(EA)	1.077122	[1.05-1.11]	Illumina [6627481] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	3q26.33	SOX2OT	rs9841616-T	NR	5E-9		1.0775862	[1.05-1.1]	Affymetrix, Illumina [up to 5107227] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q26.33	NR	rs9841616-T	NR	3E-8		1.0869565	[NR]	Illumina [7158791] (imputed)	N
1967	chr3	181167584	181167585	rs9841616	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	3q26.33	CCDC39, DNAJC19, FXR1	rs9841616-T	0.833	2E-8		1.081081	[1.05-1.11]	Affymetrix, Illumina [9005918] (imputed)	N
1967	chr3	181186465	181186466	rs13061117	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q26.33	SOX2	rs13061117-T	0.909819	1E-9		0.0146976	[0.01-0.0194] unit decrease	Affymetrix [12370749]	N
1967	chr3	181205592	181205593	rs12485391	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	3q26.33		rs12485391-?	NR	1E-7				NR [~ 8900000] (imputed)	N
1967	chr3	181256246	181256247	rs11917999	32595297	Kweon K	2018-04-01	Soa Chongsonyon Chongsin Uihak	Genome-Wide Analysis Reveals Four Novel Loci for Attention-Deficit Hyperactivity Disorder in Korean Youths.	Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms)	71 Korean ancestry ADHD child cases, 64 Korean ancestry child controls	NA	3q26.33	SOX2-OT	rs11917999-G	0.222	4E-6				Affymetrix [525356]	N
1967	chr3	181257195	181257196	rs10937060	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3q26.33	SOX2-OT, RP11-4B14.3, SOX2	rs10937060-C	NR	5E-6	(sleep duration, weekdays)	0.2534	[0.14-0.36] unit decrease	Affymetrix [7141204] (imputed)	N
1968	chr3	181311566	181311567	rs9839776	24514567	Boraska V	2014-02-11	Mol Psychiatry	A genome-wide association study of anorexia nervosa.	Anorexia nervosa	2,907 European ancestry cases, 14,860 European ancestry controls	2,677 European ancestry cases, 8,629 European ancestry controls, 458 Japanese ancestry cases, 421 Japanese ancestry controls	3q26.33	SOX2OT	rs9839776-T	0.27	3E-7		1.158	[1.095-1.225]	Illumina [1185559] (imputed)	N
1968	chr3	181329681	181329682	rs6443750	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q26.33		rs6443750-C	NR	1E-8		0.0168	[0.011-0.023] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
1968	chr3	181329681	181329682	rs6443750	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.33	NR	rs6443750-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
1968	chr3	181329681	181329682	rs6443750	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.33		rs6443750-?	NR	3E-10				NR [~ 8900000] (imputed)	N
1968	chr3	181329681	181329682	rs6443750	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.33	NA	rs6443750-T	0.1994	7E-13		0.0152	[0.011-0.019] unit decrease	NR [~ 27400000] (imputed)	N
1968	chr3	181346936	181346937	rs9842371	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 31,852 European ancestry cases, 428,084 European ancestry controls	NA		NR	rs9842371-T	NR	3E-33		1.0898		Affymetrix [9869154] (imputed)	N
1968	chr3	181346936	181346937	rs9842371	33311586	Yonova-Doing E	2020-12-11	Commun Biol	Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract.	Age-related nuclear cataracts	7,352 European ancestry individuals, 2,230 Chinese ancestry individuals, 2,369 Malay ancestry individuals, 2,200 Indian ancestry individuals	941 European ancestry cases, 922 European ancestry controls, 769 Chinese ancestry cases, 759 Chinese ancestry controls, 1,097 indian ancestry cases, 811 indian ancestry controls		SOX2	rs9842371-?	NR	2E-19		9.03	NR z score increase	Illumina [8500000] (imputed)	N
1968	chr3	181346936	181346937	rs9842371	31816047	Boutin TS	2019-12-09	Hum Mol Genet	Insights into the genetic basis of retinal detachment.	Cataracts (operation)	21,679 British ancestry cases, 387,283 British ancestry controls	NA		SOX2, 0T	rs9842371-?	0.358	2E-14		1.0795919	[1.06-1.1]	Affymetrix [NR] (imputed)	N
1968	chr3	181363464	181363464	rs10663094	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	3q26.33	SOX2, OT	rs10663094-ACT	NR	5E-9	(female)	1.0293	[1.02-1.04]	Affymetrix [9869154] (imputed)	N
1968	chr3	181363464	181363464	rs10663094	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	38,996 female cases, 283,185 female controls, 28,848 male cases, 234,414 male controls	211,030 female cases, 1,623,785 female controls, 136,179 male cases, 1,263,461 male controls	3q26.33	SOX2, OT	rs10663094-ACT	NR	5E-30	(male)	1.0683	[1.06-1.08]	Affymetrix [9869154] (imputed)	N
1968	chr3	181363464	181363464	rs10663094	34127677	Choquet H	2021-06-14	Nat Commun	A large multiethnic GWAS meta-analysis of cataract identifies new risk loci and sex-specific effects.	Cataracts	28,092 non-Hispanic White ancestry cases, 50,487 non-Hispanic White ancestry controls, 2,233 East Asian ancestry cases, 7,023 East Asian ancestry controls, 2,149 Hispanic/Latino cases, 6,620 Hispanic/Latino controls, 815 African American cases, 2,368 African American controls, 31,852 European ancestry cases, 428,084 European ancestry controls, 757 African ancestry cases, 7,897 African ancestry controls, 1,278 South Asian ancestry cases, 8,571 South Asian ancestry controls, 668 other admixed cases, 7,349 other admixed controls	313,278 European ancestry cases, 2,210,509 European ancestry controls, 7,715 African American cases, 120,390 African American controls, 3,934 East Asian ancestry cases, 104,766 East Asian ancestry controls, 21,408 Latino cases, 425,544 Latino controls, 874 South Asian ancestry cases, 26,037 South Asian ancestry controls	3q26.33	SOX2, OT	rs10663094-ACT	NR	2E-32		1.05	[1.04-1.06]	Affymetrix [9869154] (imputed)	N
1968	chr3	181363464	181363464	rs10663094	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	3q26.33		rs10663094-ACT	NR	7E-11		0.0146	[0.01-0.019] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1968	chr3	181363464	181363464	rs10663094	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	3q26.33		rs10663094-ACT	0.35	1E-30		0.012	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
1968	chr3	181373642	181373642	rs113439088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Cataracts	39,519 European ancestry cases, 452,358 European ancestry controls, 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls	NA	3q26.33		rs113439088-TCTCTC	NR	5E-24		0.0894	[0.072-0.107] unit increase	Affymetrix, Illumina [25845331] (imputed)	N
1968	chr3	181378991	181378992	rs4133078	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q26.33		rs4133078-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1968	chr3	181402061	181402062	rs186834402	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	3q26.33	NR	rs186834402-C		2E-6		0.7698	[0.46-1.08] SD units increase	NR [10700000] (imputed)	N
1969	chr3	181408123	181408124	rs9841382	30271922	Clifton EAD	2018-05-03	Commun Biol	Genome-wide association study for risk taking propensity indicates shared pathways with body mass index.	Self-reported risk-taking behaviour	113,882 European ancestry cases, 322,354 European ancestry controls	NA	3q26.33	SOX2-OT	rs9841382-C	0.14	7E-11		1.038	[1.026-1.049]	Affymetrix [7736308] (imputed)	N
1969	chr3	181408123	181408124	rs9841382	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3q26.33	SOX2	rs9841382-T	0.84	7E-13		0.052	[0.038-0.066] unit decrease	Affymetrix [NR] (imputed)	N
1969	chr3	181408123	181408124	rs9841382	30181555	Strawbridge RJ	2018-09-04	Transl Psychiatry	Genetics of self-reported risk-taking behaviour, trans-ethnic consistency and relevance to brain gene expression.	Self-reported risk-taking behaviour	83,677 British ancestry cases, 244,662 British ancestry controls	2,764 South Asian ancestry cases, 3,139 African Caribbean ancestry cases, 16,169 European ancestry cases, 3,866 mixed ancestry cases, 4,267 South Asian ancestry controls, 4,341 African Caribbean ancestry controls, 31,814 European ancestry controls, 5,988 mixed ancestry controls	3q26.33	NR	rs9841382-T	0.84	4E-8		0.034	[0.022-0.046] unit increase	Affymetrix [NR] (imputed)	N
1969	chr3	181409056	181409057	rs7631379	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	3q26.33	NR	rs7631379-C	0.206	4E-11		0.02080142	[0.015-0.027] unit increase	NR [~ 10000000] (imputed)	N
1969	chr3	181414945	181414946	rs4510419	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	3q26.33	NR	rs4510419-C	0.201	5E-13		0.0100246	[0.0073-0.0127] unit increase	NR [9732723] (imputed)	N
1969	chr3	181418200	181418201	rs34308817	28957384	Kim SK	2017-09-28	PLoS One	Two genetic loci associated with ankle injury.	Ankle injury	1,421 European ancestry cases, 154 Hispanic/Latino cases, 121 East Asian ancestry cases, 81,843 European ancestry controls, 8,406 Hispanic/Latino controls, 7,397 East Asian ancestry controls	NA	3q26.33	NR	rs34308817-T	NR	2E-6		1.2772		Affymetrix [8183964] (imputed)	N
1969	chr3	181419366	181419367	rs114600294	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	3q26.33	NR	rs114600294-?		8E-10		0.0162426	[0.011-0.021] unit decrease	Affymetrix [19400418] (imputed)	N
1969	chr3	181419366	181419367	rs114600294	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q26.33	SOX2	rs114600294-C	0.19	1E-10		0.0097	[0.0068-0.0126] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
1969	chr3	181422853	181422854	rs4434184	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q26.33		rs4434184-A	0.814	9E-11		0.01	[0.0061-0.0139] unit decrease	NR [NR] (imputed)	N
1969	chr3	181426553	181426554	rs35788479	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	3q26.33	SOX2	rs35788479-A	0.145	3E-11		0.0112	[0.0079-0.0145] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
1969	chr3	181443637	181443638	rs116780279	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	3q26.33	NR	rs116780279-T	0.9795	2E-7		3.9415	[2.45-5.43] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1969	chr3	181443637	181443638	rs116780279	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (baseline)	13,137 European ancestry individuals	2,451 European ancestry individuals	3q26.33	NR	rs116780279-T	0.9792	7E-7		3.951	[2.39-5.52] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
1969	chr3	181448557	181448558	rs12491867	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.33	NR	rs12491867-A	0.1132	4E-9	(COL18A1)	0.02407	NR unit increase	Illumina [1671387] (imputed)	N
1969	chr3	181456215	181456216	rs139388380	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Major depressive disorder in trauma-unexposed individuals	9,487 European ancestry cases, 39,677 European ancestry controls	NA	3q26.33	NR	rs139388380-T	0.0193939	5E-6		1.135	[1.08-1.19]	Affymetrix [7791636] (imputed)	N
1969	chr3	181462477	181462478	rs11707593	32131869	Arbeeva L	2020-03-04	J Foot Ankle Res	Genome-wide meta-analysis identified novel variant associated with hallux valgus in Caucasians.	Hallux valgus	1,705 European ancestry female cases, 1,945 European ancestry female controls	NA	3q26.33	SOX2-OT	rs11707593-T	0.24	5E-6		1.32	[1.17-1.49]	Affymetrix, Illumina [up to 7729175] (imputed)	N
1969	chr3	181472391	181472392	rs6443761	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	3q26.33		rs6443761-T	0.575	3E-8		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
1969	chr3	181481345	181481346	rs200454953	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3q26.33	NR	rs200454953-?	NR	9E-6		3.86	[2.9-5.12]	Illumina [539000] (imputed)	N
1969	chr3	181493212	181493212	rs541989586	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Toxoplasma gondii sag1 antibody levels	3,919 White British ancestry individuals	NA	3q26.33	SOX2, OT	rs541989586-A	0.934	4E-8		0.26	[0.17-0.35] unit decrease	NR [25472218] (imputed)	N
1969	chr3	181511950	181511951	rs1345417	30248107	Wu S	2018-09-24	PLoS Genet	Genome-wide association studies and CRISPR/Cas9-mediated gene editing identify regulatory variants influencing eyebrow thickness in humans.	Eyebrow thickness	2,961 Han Chinese ancestry individuals, 721 Uyghur ancestry individuals, 2,301 Latin American ancestry individuals	4,411 Dutch ancestry individuals	3q26.33	SOX2	rs1345417-G	NR	1E-19	(East Asian, Hispanic and Other admixed)			Illumina [up to 7224952] (imputed)	N
1969	chr3	181511950	181511951	rs1345417	29895819	Endo C	2018-06-12	Sci Rep	Genome-wide association study in Japanese females identifies fifteen novel skin-related trait associations.	Excessive hairiness	3,830 Japanese ancestry female cases, 7,414 Japanese ancestry female controls	NA	3q26.33	SOX2, ATP11B	rs1345417-?	NR	8E-9				Affymetrix [536506]	N
1969	chr3	181511950	181511951	rs1345417	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	3q26.33	SOX2, ATP11B	rs1345417-?	NR	2E-31		0.047	[0.039-0.055] unit increase	Illumina [12039491] (imputed)	N
1969	chr3	181512033	181512034	rs73182377	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (late vs. average onset facial hair)	26,066 European ancestry late onset individuals, 161,175 European ancestry average onset individuals	NA	3q26.33		rs73182377-C	NR	5E-29		0.0145382	[0.012-0.017] years increase	NR [7400000] (imputed)	N
1969	chr3	181512033	181512034	rs73182377	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (early vs. average onset facial hair)	13,226 European ancestry early onset individuals, 161,175 European ancestry average onset individuals	NA	3q26.33		rs73182377-C	NR	9E-23		0.0101963	[0.0082-0.0122] years decrease	NR [7400000] (imputed)	N
1969	chr3	181512033	181512034	rs73182377	32210231	Hollis B	2020-03-24	Nat Commun	Genomic analysis of male puberty timing highlights shared genetic basis with hair colour and lifespan.	Male puberty timing (age at voice breaking MTAG)	205,354 European ancestry individuals	NA	3q26.33		rs73182377-C	NR	2E-24		0.039504763	[0.032-0.047] years increase	NR [7400000] (imputed)	N
1969	chr3	181517981	181517982	rs833268	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs833268-G	0.385758	3E-12		0.0223794	[0.016-0.029] unit increase	NR [19129689] (imputed)	N
1969	chr3	181520165	181520166	rs833270	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q26.33		rs833270-?	NR	4E-12				NR [~ 8900000] (imputed)	N
1969	chr3	181521496	181521497	rs60733335	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q26.33		rs60733335-?	NR	5E-11				NR [~ 8900000] (imputed)	N
1970	chr3	181554298	181554299	rs75380963	30306274	Shah RL	2018-10-10	Hum Genet	Genome-wide association studies for corneal and refractive astigmatism in UK Biobank demonstrate a shared role for myopia susceptibility loci.	Corneal astigmatism	Up to 86,335 European ancestry individuals		3q26.33	LOC101929598	rs75380963-T	NR	2E-6		0.079	[0.046-0.112] dioptres increase	NR [5901671] (imputed)	N
1970	chr3	181570858	181570859	rs151116344	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	3q26.33		rs151116344-A	NR	8E-6		13.897	[7.94-19.85] unit increase	Illumina [NR] (imputed)	N
1970	chr3	181629222	181629223	rs9834564	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs9834564-C	0.23805	1E-8		0.0206564	[0.014-0.028] unit decrease	NR [19129689] (imputed)	N
1971	chr3	181718600	181718601	rs6785807	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Free thyroxine concentration	49,269 European ancestry individuals	up to 22,383 European ancestry individuals	3q26.33	SOX2_OT	rs6785807-A	0.15	7E-11		0.057	[0.039-0.075] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
1971	chr3	181768923	181768924	rs112550805	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q26.33	NR	rs112550805-C	0.0122	7E-9	(DCN)	0.05931	NR unit increase	Illumina [1671387] (imputed)	N
1972	chr3	181851283	181851284	rs16832889	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	3q26.33	NR	rs16832889-?	0.011	1E-6		3.085	[1.965-4.844] unit increase	Illumina [563945]	N
1972	chr3	181862414	181862415	rs16832899	30219690	Heinzman JT	2018-09-07	J Affect Disord	GWAS and systems biology analysis of depressive symptoms among smokers from the COPDGene cohort.	Depression in smokers	1,622 European ancestry cases, 391 African American cases, 4,954 European ancestry controls, 2,749 African American controls	NA	3q26.33	FLJ46066	rs16832899-G	0.205	4E-6	(AA)			Illumina [NR] (imputed)	N
1973	chr3	181937076	181937077	rs147508746	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.33	Intergenic	rs147508746-C	0.997	5E-7	(AA)	0.165	unit increase	Illumina [NR] (imputed)	N
1973	chr3	181938436	181938437	rs7611110	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3q26.33	NR	rs7611110-?	NR	8E-6	(Chao1 richness estimate)	0.487679	[0.28-0.7] unit increase	Illumina [5293637] (imputed)	N
1973	chr3	181940146	181940147	rs142255501	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q26.33	Intergenic	rs142255501-A	0.997	4E-7	(AA)	0.164	unit increase	Illumina [NR] (imputed)	N
1973	chr3	181961441	181961442	rs6443785	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3q26.33	NR	rs6443785-?	NR	4E-7	(Simpson's diversity index)	357191.0	[220509.42-493872.58] unit increase	Illumina [5293637] (imputed)	N
1973	chr3	181965767	181965768	rs6443787	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	3q26.33	NR	rs6443787-T	0.075	1E-6	(Jaccard metric)	4.7568502	NR z-score increase	Illumina [5293637] (imputed)	N
1973	chr3	181966189	181966190	rs6443788	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q26.33		rs6443788-A	0.2886	1E-9		0.015	[0.011-0.019] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
1973	chr3	181969907	181969908	rs55948466	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3q26.33	NR	rs55948466-?	NR	8E-7	(Richness)	14.791	[8.95-20.63] unit increase	Illumina [5293637] (imputed)	N
1973	chr3	181969907	181969908	rs55948466	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (alpha diversity)	858 Metropolitan French ancestry individuals	NA	3q26.33	NR	rs55948466-?	NR	3E-6	(ACE metric)	0.904128	[0.53-1.28] unit increase	Illumina [5293637] (imputed)	N
1973	chr3	182003489	182003490	rs72622588	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	3q26.33	FLJ46066	rs72622588-T	17.49	5E-13	(additive)	0.95	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
1973	chr3	182027105	182027106	rs4859214	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	3q26.33	NR	rs4859214-?		8E-6	(African)			Illumina [~ 5140000] (imputed)	N
1973	chr3	182038329	182038330	rs4859215	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.33	SOX2, ATP11B	rs4859215-T	0.4776	2E-13		0.0124602	[0.0091-0.0158] unit increase	Affymetrix [11880941] (imputed)	N
1974	chr3	182096310	182096311	rs9836621	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.33	SOX2, ATP11B	rs9836621-C	0.47829999999999995	2E-13		1.0282929		Affymetrix [11880941] (imputed)	N
1974	chr3	182121572	182121573	rs10513788	24684796	Cox AJ	2014-03-11	Neurobiol Aging	Heritability and genetic association analysis of cognition in the Diabetes Heart Study.	Cognitive function	423 type 2 diabetes cases and 127 unaffected siblings from 257 families	NA	3q26.33	intergenic	rs10513788-T	0.182	5E-6	(Semantic Fluency)	2.688	[1.56-3.82] unit decrease	Affymetrix [> 371951] (imputed)	N
1974	chr3	182124500	182124501	rs1906508	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q26.33		rs1906508-?	NR	5E-8				NR [~ 8900000] (imputed)	N
1974	chr3	182137630	182137631	rs6443802	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	3q26.33		rs6443802-?	NR	3E-12		6.9812355	z score decrease	Affymetrix [NR] (imputed)	N
1974	chr3	182155061	182155062	rs17826722	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	3q26.33	intergenic	rs17826722-?	NR	8E-6		1.4228597	[1.22-1.66]	Illumina [5842835] (imputed)	N
1975	chr3	182198338	182198339	rs62294910	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage colony stimulating factor levels	840 Finnish ancestry individuals	NA	3q26.33	NR	rs62294910-G	NR	7E-7		0.3431	[0.21-0.48] SD units decrease	NR [10700000] (imputed)	N
1975	chr3	182226556	182226557	rs73189972	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs73189972-G	0.0655613	3E-9		0.0369804	[0.025-0.049] unit decrease	NR [19129689] (imputed)	N
1975	chr3	182237031	182237032	rs13092705	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q26.33		rs13092705-?	NR	3E-14				NR [~ 8900000] (imputed)	N
1975	chr3	182237031	182237032	rs13092705	28196072	Hagenaars SP	2017-02-14	PLoS Genet	Genetic prediction of male pattern baldness.	Male-pattern baldness	52,874 British ancestry males		3q26.33	NR	rs13092705-T	NR	4E-8		0.0647981	NR unit increase	NR [NR] (imputed)	N
1975	chr3	182247436	182247437	rs2607948	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs2607948-T	0.0700699	5E-32		0.0726051	[0.061-0.085] unit decrease	NR [19129689] (imputed)	N
1975	chr3	182257585	182257586	rs4484214	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q26.33	SOX2, ATP11B	rs4484214-A	0.6819	7E-10		0.0112208	[0.0077-0.0148] unit increase	Affymetrix [11880941] (imputed)	N
1975	chr3	182262671	182262672	rs6443810	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q26.33		rs6443810-C	0.6856	2E-10		0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
1975	chr3	182297056	182297057	rs10937094	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q26.33	NA	rs10937094-A	0.7109	4E-10		0.0116	[0.0079-0.0153] unit increase	NR [~ 27400000] (imputed)	N
1975	chr3	182303308	182303309	rs7652216	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q26.33	NR	rs7652216-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1975	chr3	182303308	182303309	rs7652216	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q26.33		rs7652216-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1976	chr3	182332175	182332176	rs4859135	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs4859135-A	0.156486	2E-11		0.0321353	[0.023-0.042] unit increase	NR [19129689] (imputed)	N
1976	chr3	182335634	182335635	rs74614808	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q26.33	NR	rs74614808-T	0.037724	7E-11		0.060278	[0.042-0.078] unit increase	NR [19129689] (imputed)	N
1976	chr3	182436335	182436336	rs11918760	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (linear analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	3q26.33	FLJ46066, ATP11B	rs11918760-?		9E-6	(EA)	0.118	[0.066-0.17] unit increase	Illumina [7205781] (imputed)	N
1977	chr3	182456979	182456980	rs2717296	31006051	Kharazmi M	2019-04-20	Calcif Tissue Int	A Genome-Wide Association Study of Bisphosphonate-Associated Atypical Femoral Fracture.	Atypical femoral fracture in phosphonate treatment	50 European ancestry cases, 1 Chilean ancestry case, 324 European ancestry controls	NA	3q26.33	intergenic	rs2717296-C	0.426	9E-6		2.864	[1.802-4.552]	Illumina [7585874] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q26.33		rs149300040-CA	NR	4E-12		0.0183	[0.013-0.023] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q26.33	RP11-225N10.1	rs149300040-CA	0.697072	3E-29		0.027670728	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q26.33	RP11-225N10.1	rs149300040-CA	0.697068	4E-11		0.016169207	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q26.33	NR	rs149300040-I	0.695439	1E-35		0.028289	[0.024-0.033] SD unit increase	Affymetrix, Illumina [49860007] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q26.33	NR	rs149300040-I	0.695456	6E-13		0.015994	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1977	chr3	182504827	182504827	rs149300040	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q26.33	RP11-225N10.1	rs149300040-CA	0.6925	2E-15		0.03125725	[0.024-0.039] unit increase	Affymetrix [~ 2500000] (imputed)	N
1977	chr3	182509173	182509174	rs1829838	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q26.33	RP11-225N10.1	rs1829838-C	0.672994	6E-13		0.017205708	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
1977	chr3	182513350	182513351	rs9283650	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q26.33		rs9283650-?	NR	3E-15				NR [~ 8900000] (imputed)	N
1977	chr3	182513713	182513714	rs10937101	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.33	NR	rs10937101-G	0.613429	4E-13				Affymetrix, Illumina [21126107] (imputed)	N
1977	chr3	182514635	182514636	rs9870317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q26.33	ATP11B	rs9870317-A	0.685377	4E-14		0.0181917	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
1977	chr3	182514635	182514636	rs9870317	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.33	NR	rs9870317-A	0.32758	2E-36				Affymetrix, Illumina [22063850] (imputed)	N
1977	chr3	182514635	182514636	rs9870317	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.33		rs9870317-A	0.3212	9E-9		0.0086	[0.0057-0.0115] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1977	chr3	182514635	182514636	rs9870317	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q26.33	Intergenic	rs9870317-A	0.3212	1E-10	(MTAG)	0.009	[0.0063-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1977	chr3	182521142	182521143	rs12696498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q26.33		rs12696498-?	NR	7E-29				NR [~ 8900000] (imputed)	N
1977	chr3	182549364	182549364	rs11435937	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3q26.33		rs11435937-AT	NR	9E-9		0.0165	[0.011-0.022] unit decrease	Affymetrix, Illumina [20536605] (imputed)	N
1977	chr3	182575351	182575351	rs35003893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q26.33	ATP11B	rs35003893-TA	0.655001	4E-12		0.016606506	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
1977	chr3	182575351	182575351	rs35003893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q26.33	ATP11B	rs35003893-TA	0.655008	1E-10		0.015452862	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1977	chr3	182579731	182579731	rs35665738	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q26.33	NR	rs35665738-I	0.681918	4E-14		0.017045	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1978	chr3	182587665	182587666	rs686476	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q26.33	NR	rs686476-C	0.617222	3E-11				Affymetrix, Illumina [20825802] (imputed)	N
1978	chr3	182587665	182587666	rs686476	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q26.33		rs686476-T	0.3213	3E-9	(conditional-joint)	0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1978	chr3	182588647	182588648	rs139191981	33293427	Emami NC	2020-12-08	Cancer Res	A large-scale association study detects novel rare variants, risk genes, functional elements, and polygenic architecture of prostate cancer susceptibility.	Prostate cancer	14,113 European ancestry cases, 194,140 European ancestry controls	NA	3q26.33	NR	rs139191981-A	NR	5E-8		5.43	2.95-9.97	Affymetrix [at least 232408] (imputed)	N
1978	chr3	182640639	182640639	rs747974456	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q26.33		rs747974456-GACT	NR	7E-12		0.0194	[0.014-0.025] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
1978	chr3	182642133	182642134	rs7616201	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q26.33	RP11-531F16.4	rs7616201-G	0.347437	7E-11		0.015383065	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
1978	chr3	182670992	182670993	rs10937104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q26.33		rs10937104-?	NR	6E-9				NR [~ 8900000] (imputed)	N
1978	chr3	182670992	182670993	rs10937104	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q26.33		rs10937104-?	NR	1E-9		0.0128668	[0.0085-0.0172] unit decrease	Affymetrix [20259828] (imputed)	N
1978	chr3	182705103	182705104	rs141790550	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Fasting insulin	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	3q26.33	DCUN1D1, MCCC1	rs141790550-T	0.05	8E-7	(African American)	0.8	[0.49-1.11] unit decrease	Illumina [up to 13042663] (imputed)	N
1979	chr3	182728668	182728669	rs4074110	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	3q27.1	intergenic	rs4074110-?	0.37	3E-6	(men)	0.276	NR unit increase	Illumina [628376]	N
1979	chr3	182730290	182730291	rs9858038	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	3q27.1	DCUN1D1, MCCC1	rs9858038-?	NR	3E-14		1.172	[1.124-1.221]	Illumina [12438219] (imputed)	N
1979	chr3	182733254	182733255	rs35706839	30175238	Jackson VE	2018-01-12	Wellcome Open Res	Meta-analysis of exome array data identifies six novel genetic loci for lung function.	Lung function (FVC)	60,749 European ancestry individuals, 7,721 African ancestry individuals	111,556 European ancestry individuals	3q27.1	MCCC1	rs35706839-T	5.0E-5	6E-6	(EA)	4.534	unit increase	Illumina [179215]	N
1979	chr3	182735210	182735211	rs2292056	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	3q27.1	MCCC1	rs2292056-?	NR	8E-17				Illumina [5843213] (imputed)	N
1979	chr3	182739737	182739738	rs11928508	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q27.1	NR	rs11928508-G	0.711278	5E-11		0.013719	[0.0096-0.0178] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
1979	chr3	182752042	182752043	rs140278703	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	3q27.1	MCCC1	rs140278703-T		2E-11		0.1671	[0.12-0.22] unit decrease	Illumina [NR]	N
1979	chr3	182752565	182752565	rs540400656	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q27.1	MCCC1	rs540400656-CT	0.690253	2E-10		0.015607759	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1979	chr3	182755208	182755209	rs2270968	28011712	Foo JN	2016-12-22	Hum Mol Genet	Genome-wide association study of Parkinson's disease in East Asians.	Parkinson's disease	779 Han Chinese ancestry cases, 13,227 Han Chinese ancestry controls	5,125 Asian ancestry cases, 17,604 Asian ancestry controls	3q27.1	MCCC1, DCUN1D1, LAMP3	rs2270968-G	0.338	3E-8		1.178	NR	Illumina [2402394] (imputed)	N
1979	chr3	182755208	182755209	rs2270968	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3q27.1	MCCC1	rs2270968-T	0.26	1E-16	(hydroxyisovaleroyl carnitine)	0.031	[0.023-0.039] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
1979	chr3	182760072	182760073	rs10513789	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	3q27.1	MCCC1	rs10513789-T	0.8112	1E-34		0.1485	[0.12-0.17] unit increase	NR [7784415] (imputed)	N
1979	chr3	182760072	182760073	rs10513789	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	3q27.1	MCCC1, LAMP3	rs10513789-T	0.80	3E-10		1.25	[1.16-1.33]	Illumina [522782]	N
1979	chr3	182762436	182762437	rs12637471	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	3q27.1	MCCC1	rs12637471-G	0.802	2E-30		1.1764705	[1.15-1.22]	Illumina [11933700] (imputed)	N
1979	chr3	182762436	182762437	rs12637471	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	3q27.1	MCCC1	rs12637471-G	0.807	2E-21		1.1876	[1.15-1.22]	Illumina [7893274] (imputed)	N
1979	chr3	182797308	182797309	rs13061424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs13061424-A	0.679228	9E-14				Affymetrix, Illumina [23472807] (imputed)	N
1979	chr3	182810143	182810144	rs3732604	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q27.1	MCCC1	rs3732604-G	0.422695	8E-18	(beta-hydroxyisovalerate)	0.202	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1979	chr3	182810143	182810144	rs3732604	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	3q27.1	MCCC1	rs3732604-G	0.422695	8E-18	(beta-hydroxyisovalerate)	0.202	[0.16-0.25] unit decrease	Illumina [13039987] (imputed)	N
1979	chr3	182821274	182821275	rs11711441	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	3q27.1	MCCC1, LAMP3	rs11711441-G	0.86	8E-12		1.19	[1.13-1.25]	Illumina [7689524] (imputed)	N
1980	chr3	182857260	182857261	rs74285558	32830257	Castellucci LC	2020-08-23	Clin Infect Dis	A Genome-Wide Association Study Identifies SERPINB10, CRLF3, STX7, LAMP3, IFNG-AS1 and KRT80 As Risk Loci Contributing to Cutaneous Leishmaniasis In Brazil.	Cutaneous leishmaniasis	2,066 Hispanic/Latino cases, 2,046 Hispanic/Latino controls	NR	3q27.1	LAMP3	rs74285558-T		7E-6		0.868	[0.817-0.923]	Illumina [4498586] (imputed)	N
1980	chr3	182865072	182865073	rs12493050	26503763	Song J	2015-10-27	Mol Psychiatry	Genome-wide association study identifies SESTD1 as a novel risk gene for lithium-responsive bipolar disorder.	Subjective response to lithium treatment	1,639  European ancestry bipolar disorder responder cases, 8,899 European ancestry controls	NA	3q27.1	MCF2L2, MCCC1, LAMP3, DCUN1D1, ATP11B	rs12493050-G	0.2	9E-7		1.27	[NR]	Affymetrix, Illumina [> 8000000] (imputed)	N
1980	chr3	182869817	182869818	rs683395	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	3q27.1	NR	rs683395-G	0.08	5E-6		1.47	[1.26-1.71]	Affymetrix [469557]	N
1980	chr3	182870435	182870436	rs514636	21254220	Jiang Y	2011-02-01	Genet Epidemiol	Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder.	Bipolar disorder	1,868 European ancestry cases, 2,938 European ancestry controls	NA	3q27.1	NR	rs514636-?	NR	7E-7	(dominant)			Affymetrix [NR]	N
1980	chr3	182887666	182887667	rs630527	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	3q27.1	LAMP3, MCF2L2	rs630527-A	0.11	5E-6		0.27	unit increase	Illumina [5600000] (imputed)	N
1980	chr3	182931797	182931798	rs111955606	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia vs hyperopia	11,197 European ancestry low myopia cases, 10,828 European ancestry hyperopia cases	NA	3q27.1	NR	rs111955606-?	NR	3E-6		0.318855	[0.19-0.45] unit decrease	NR [13958389] (imputed)	N
1980	chr3	182945099	182945100	rs12638707	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q27.1	NR	rs12638707-?	NR	3E-7				Affymetrix [NR]	N
1981	chr3	183009204	183009205	rs79670133	29213071	Mendez-Giraldez R	2017-12-06	Sci Rep	GWAS of the electrocardiographic QT interval in Hispanics/Latinos generalizes previously identified loci and identifies population-specific signals.	QT interval	15,997 Hispanic/Latino individuals	NA	3q27.1	MCF2L2	rs79670133-T	0.02	2E-6		3.85	[2.26-5.44] ms increase	Affymetrix, Illumina [up to 17586686] (imputed)	N
1982	chr3	183149320	183149321	rs59994833	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	799 African American cases, 14,353 African American controls	NA	3q27.1	NR	rs59994833-?	NR	2E-7		0.9436	[0.59-1.3] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
1982	chr3	183195804	183195805	rs13062589	33816493	Cai R	2021-03-18	Front Cell Dev Biol	Genome-Wide Association Identifies Risk Pathways for SAPHO Syndrome.	SAPHO syndrome	49 Chinese ancestry cases, 121 Chinese ancestry controls	NA	3q27.1	NR	rs13062589-?	NR	4E-10		0.1725	NR	Illumina [802276]	N
1982	chr3	183200001	183200002	rs59531931	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	3q27.1	intergenic	rs59531931-G	0.116883	3E-6		0.740945	[0.44-1.04] unit increase	NR [7263501] (imputed)	N
1982	chr3	183210853	183210854	rs2255932	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-beta levels	3,309 Finnish ancestry individuals	NA	3q27.1	NR	rs2255932-G	NR	8E-6		0.1243	[0.072-0.177] SD units decrease	NR [10700000] (imputed)	N
1982	chr3	183219655	183219656	rs62287198	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	3q27.1	KLHL6	rs62287198-G	0.463358	3E-9		0.9743618	NR	Affymetrix [~ 9600000] (imputed)	N
1983	chr3	183321405	183321406	rs74358338	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q27.1		rs74358338-?	NR	3E-11				NR [~ 8900000] (imputed)	N
1983	chr3	183347873	183347874	rs13061162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q27.1		rs13061162-C	NR	2E-9		0.0136	[0.0093-0.0179] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
1983	chr3	183349009	183349010	rs11711420	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q27.1	KLHL24	rs11711420-T	0.746655	3E-10		0.018654	[0.013-0.024] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1983	chr3	183363262	183363263	rs6797002	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	2,516 African American individuals, 48,454 European ancestry individuals	NA	3q27.1	KLHL24	rs6797002-C	0.7275	8E-14		0.0487	[0.036-0.061] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1984	chr3	183374692	183374693	rs554632245	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q27.1		rs554632245-A	0.23	3E-8		5.53	z score increase	Affymetrix [9061022] (imputed)	N
1984	chr3	183374692	183374693	rs554632245	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q27.1	NR	rs554632245-A	0.2254	3E-9				NR [9056863] (imputed)	N
1984	chr3	183378744	183378745	rs71631242	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q27.1		rs71631242-C	NR	2E-15		0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
1984	chr3	183380034	183380035	rs830179	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3q27.1	KLHL24	rs830179-G	0.6727	1E-11				Affymetrix, Illumina [9900000] (imputed)	N
1984	chr3	183380034	183380035	rs830179	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume (adjusted for hypertension)	46,055 European ancestry individuals, 2,469 African American individuals	NA	3q27.1	KLHL24	rs830179-G	0.6727	3E-12		0.0436	[0.031-0.056] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1984	chr3	183380034	183380035	rs830179	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume	48,454 European ancestry individuals	NA	3q27.1	KLHL24	rs830179-G	NR	1E-12		0.0434	[0.031-0.055] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
1984	chr3	183380034	183380035	rs830179	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	3q27.1	KLHL24	rs830179-A	0.3204	6E-8		0.0331	[0.021-0.045] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1984	chr3	183380034	183380035	rs830179	32358547	Persyn E	2020-05-01	Nat Commun	Genome-wide association study of MRI markers of cerebral small vessel disease in 42,310 participants.	White matter hyperintensities	39,011 European ancestry individuals, 2,099 African ancestry individuals, 795 Hispanic individuals, 3,299 Asian ancestry individuals	NA	3q27.1	KLHL24	rs830179-A		5E-9		5.383	[NR] Zscore decrease	Affymetrix [9700000] (imputed)	N
1984	chr3	183383309	183383310	rs151044295	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs151044295-?		5E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1984	chr3	183383309	183383310	rs151044295	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs151044295-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1984	chr3	183383309	183383310	rs151044295	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs151044295-?		5E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1984	chr3	183385404	183385405	rs12487341	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q27.1		rs12487341-?	NR	2E-8				NR [~ 8900000] (imputed)	N
1984	chr3	183400718	183400718	rs35483288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q27.1	NR	rs35483288-T	0.756614	2E-12		0.00677595	[0.0048-0.0087] unit increase	Affymetrix [16582909] (imputed)	N
1984	chr3	183400718	183400718	rs35483288	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q27.1	NR	rs35483288-T	0.756614	7E-6		0.00473411	[0.0026-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
1984	chr3	183435712	183435713	rs262986	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	NA	3q27.1	YEATS2	rs262986-G	0.5296000000000001	8E-15		0.2371	[0.18-0.3] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
1984	chr3	183443553	183443554	rs35797778	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3q27.1	YEATS2	rs35797778-G	NR	4E-6	(adjusted for total body fat)	0.214	[0.12-0.3] unit increase	Illumina [8511049] (imputed)	N
1984	chr3	183476684	183476685	rs262993	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	3q27.1		rs262993-A	0.4324	1E-8		0.12012812	[0.076-0.164] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
1984	chr3	183486116	183486117	rs262956	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q27.1	YEATS2	rs262956-T	0.353154	2E-10		0.00911918	[0.0063-0.0119] unit increase	Affymetrix [12370749]	N
1984	chr3	183486116	183486117	rs262956	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q27.1		rs262956-?	NR	8E-8				NR [~ 8900000] (imputed)	N
1984	chr3	183498921	183498922	rs263012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	3q27.1		rs263012-C	NR	2E-8		0.0107	[0.007-0.0144] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
1984	chr3	183498921	183498922	rs263012	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	3q27.1		rs263012-C	NR	6E-10		0.012	[0.0083-0.0157] unit decrease	Affymetrix, Illumina [20537389] (imputed)	N
1984	chr3	183499703	183499704	rs263013	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q27.1	NR	rs263013-T	0.388237	2E-9		0.012362	[0.0084-0.0164] unit increase	NR [NR]	N
1985	chr3	183503016	183503017	rs263017	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q27.1		rs263017-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1985	chr3	183520111	183520112	rs17622152	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Systolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3q27.1	NR	rs17622152-A	0.4588	2E-7	(East Asian)	0.3271	[0.2-0.45] unit decrease	Illumina [6200000] (imputed)	N
1985	chr3	183520111	183520112	rs17622152	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Mean arterial pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3q27.1	NR	rs17622152-A	0.4653	2E-8	(East Asian)	0.2497	[0.16-0.34] unit decrease	Illumina [6200000] (imputed)	N
1985	chr3	183520111	183520112	rs17622152	30487518	Takeuchi F	2018-11-28	Nat Commun	Interethnic analyses of blood pressure loci in populations of East Asian and European descent.	Diastolic blood pressure	130,777 Japanese ancestry individuals	53,008 East Asian individuals, 105,253 European ancestry individuals	3q27.1	NR	rs17622152-A	0.4588	7E-8	(East Asian)	0.2153	[0.14-0.29] unit decrease	Illumina [6200000] (imputed)	N
1985	chr3	183536835	183536836	rs2606227	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q27.1	NR	rs2606227-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1985	chr3	183537758	183537759	rs2606228	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q27.1		rs2606228-?	NR	2E-10				NR [~ 8900000] (imputed)	N
1985	chr3	183548999	183549000	rs263001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.1		rs263001-?	NR	7E-18				NR [~ 8900000] (imputed)	N
1985	chr3	183562924	183562925	rs10937153	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	3q27.1		rs10937153-?	NR	2E-12				NR [~ 8900000] (imputed)	N
1985	chr3	183600511	183600512	rs11716594	30942860	Shin J	2019-04-03	J Clin Endocrinol Metab	Novel genetic locus of visceral fat and systemic inflammation.	Visceral fat	1589 French-Canadian ancestry individuals	NA	3q27.1	PARL	rs11716594-A	NR	9E-6	(adjusted for total body fat)	0.183	[0.1-0.26] unit increase	Illumina [8511049] (imputed)	N
1985	chr3	183615612	183615613	rs186021390	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs186021390-G	0.987	3E-9				Affymetrix [10369434] (imputed)	N
1985	chr3	183624009	183624010	rs16858210	26414677	Day FR	2015-11-01	Nat Genet	Large-scale genomic analyses link reproductive aging to hypothalamic signaling, breast cancer susceptibility and BRCA1-mediated DNA repair.	Menopause (age at onset)	up to 69,626 European ancestry women	NA	3q27.1	PARL, POLR2H	rs16858210-G	0.75	3E-9		0.14	[0.1-0.18] years decrease	Affymetrix, Illumina [~ 2600000] (imputed)	N
1985	chr3	183626501	183626502	rs939339	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs939339-G	0.597464	5E-11				Affymetrix, Illumina [22063850] (imputed)	N
1986	chr3	183642043	183642044	rs116432568	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs116432568-?		1E-8	(Uncinate fasciculus)			NR [8955960] (imputed)	N
1986	chr3	183642043	183642044	rs116432568	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs116432568-?		1E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1986	chr3	183642043	183642044	rs116432568	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3q27.1	NR	rs116432568-?		3E-8	(Sagittal stratum)			NR [8955960] (imputed)	N
1986	chr3	183653936	183653937	rs2139559	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q27.1	ABCC5	rs2139559-T	0.315214	1E-9		0.0149705	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183653936	183653937	rs2139559	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q27.1	NR	rs2139559-T	0.314335	4E-12		0.014976	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50282193] (imputed)	N
1986	chr3	183672845	183672846	rs68153167	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q27.1		rs68153167-?	NR	1E-14				NR [~ 8900000] (imputed)	N
1986	chr3	183675314	183675315	rs56889301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q27.1	ABCC5	rs56889301-C	0.550325	1E-11		0.0151569685	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183675314	183675315	rs56889301	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q27.1	NR	rs56889301-C	0.551198	7E-12		0.013376	[0.0096-0.0172] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
1986	chr3	183678341	183678342	rs1401999	24603532	Nongpiur ME	2014-03-06	PLoS Genet	ABCC5, a gene that influences the anterior chamber depth, is associated with primary angle closure glaucoma.	Anterior chamber depth	1,752 Malay ancestry individuals, 1,860 Indian ancestry individuals, 872 Chinese ancestry individuals	824 Chinese ancestry individuals	3q27.1	HTR3D, HTR3C, ABCC5, PARL	rs1401999-C	0.41	8E-9		0.045	[0.030-0.060] unit decrease	Illumina [NR]	N
1986	chr3	183678578	183678578	rs11438378	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q27.1	ABCC5	rs11438378-CT	0.5131	4E-12		0.02545939	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1986	chr3	183679753	183679754	rs6443925	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs6443925-C	0.322318	7E-10				Affymetrix, Illumina [21126107] (imputed)	N
1986	chr3	183681055	183681056	rs2292999	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	3q27.1	NR	rs2292999-?	NR	9E-10			[NR]	Illumina [5432814] (imputed)	N
1986	chr3	183702088	183702089	rs3749440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs3749440-G	0.391446	8E-16				Affymetrix, Illumina [23114412] (imputed)	N
1986	chr3	183702088	183702089	rs3749440	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q27.1	NR	rs3749440-G	0.372369	2E-18		0.017362	[0.013-0.021] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
1986	chr3	183709094	183709094	rs11404217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q27.1		rs11404217-GA	NR	1E-10		0.0159	[0.011-0.021] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
1986	chr3	183709094	183709094	rs11404217	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q27.1		rs11404217-GA	NR	1E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
1986	chr3	183709094	183709094	rs11404217	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q27.1	ABCC5	rs11404217-GA	0.372812	2E-16		0.018829275	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183716469	183716469	rs11429616	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3q27.1	ABCC5	rs11429616-CA	0.486612	4E-9		0.013086403	[0.0087-0.0174] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183716608	183716609	rs6773408	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	ABCC5	rs6773408-T	0.486512	4E-18		0.019871458	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183716890	183716892	rs10576500	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	ABCC5	rs10576500-G	0.486623	4E-34		0.02777286	[0.023-0.032] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183730294	183730295	rs4074672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q27.1	ABCC5	rs4074672-T	0.369338	9E-19		0.020271165	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183730294	183730295	rs4074672	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q27.1	ABCC5	rs4074672-T	0.369294	1E-17		0.019585501	[0.015-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183730294	183730295	rs4074672	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q27.1	NR	rs4074672-T	0.369536	4E-21		0.018004	[0.014-0.022] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
1986	chr3	183730294	183730295	rs4074672	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q27.1		rs4074672-?	NR	3E-13				NR [~ 8900000] (imputed)	N
1986	chr3	183736881	183736882	rs1520195	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q27.1		rs1520195-G	0.509	1E-11		0.07	[-0.1--0.05] % decrease	Affymetrix [NR] (imputed)	N
1986	chr3	183736881	183736882	rs1520195	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q27.1	NR	rs1520195-A	0.490856	4E-16		0.014741	[0.011-0.018] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
1986	chr3	183736881	183736882	rs1520195	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs1520195-A	0.539999	1E-13				Affymetrix, Illumina [19872809] (imputed)	N
1986	chr3	183738459	183738460	rs2872246	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q27.1	NR	rs2872246-C	0.5962	3E-11		0.0266	[0.019-0.034] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1986	chr3	183738459	183738460	rs2872246	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.1	ABCC5	rs2872246-A	0.4538	2E-8		1.04	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
1986	chr3	183738625	183738626	rs2313211	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q27.1	NR	rs2313211-T	0.4483	4E-10		0.0285	[0.019-0.038] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q27.1		rs6798870-A	NR	2E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q27.1		rs6798870-A	NR	7E-10		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q27.1	ABCC5	rs6798870-A	0.491041	2E-21		0.021416102	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q27.1	ABCC5	rs6798870-A	0.490628	1E-14		0.016959425	[0.013-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs6798870-A	0.546791	1E-16				Affymetrix, Illumina [24246363] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q27.1	NR	rs6798870-A	0.490238	1E-15		0.015853	[0.012-0.02] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
1986	chr3	183740349	183740350	rs6798870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q27.1		rs6798870-?	NR	4E-14				NR [~ 8900000] (imputed)	N
1986	chr3	183742327	183742328	rs11926572	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q27.1	EEF1A1P8	rs11926572-G	0.3746	1E-12		0.016391909	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
1986	chr3	183742327	183742328	rs11926572	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q27.1	NR	rs11926572-G	0.375173	7E-11		0.012706	[0.0089-0.0165] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
1986	chr3	183743646	183743647	rs9874537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs9874537-A	0.502026	4E-27				Affymetrix, Illumina [17210439] (imputed)	N
1986	chr3	183743646	183743647	rs9874537	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q27.1	NR	rs9874537-A	0.508981	2E-29		0.021431	[0.018-0.025] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
1986	chr3	183746043	183746044	rs7639048	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q27.1	HTR3D, EEF1A1P8	rs7639048-G	0.490921	1E-23		0.022272274	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
1986	chr3	183747265	183747266	rs7620457	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.1	HTR3D	rs7620457-G	0.215	9E-6	(EA)	0.018	[0.0099-0.0251] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1986	chr3	183747265	183747266	rs7620457	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.1	HTR3D	rs7620457-G	0.213	1E-6		0.019	[0.011-0.026] kg/m2 increase	Affymetrix, Illumina [2550021]	N
1986	chr3	183748636	183748637	rs11715288	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs11715288-T	0.453	3E-22				Affymetrix [10369434] (imputed)	N
1986	chr3	183748912	183748913	rs55983424	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs55983424-C	0.622358	1E-18				Affymetrix, Illumina [24649327] (imputed)	N
1986	chr3	183752772	183752773	rs12493550	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q27.1	HTR3D	rs12493550-A	0.0611540000000001	2E-10		0.0279979	[0.02-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr3	183783352	183783353	rs9823696	27527254	Gharahkhani P	2016-08-12	Lancet Oncol	Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.	Esophageal adenocarcinoma	4,112 European ancestry cases, 17,159 European ancestry controls	NA	3q27.1	HTR3C	rs9823696-A		2E-8		1.1715	[1.12-1.23]	Illumina [13074274] (imputed)	N
1987	chr3	183800550	183800551	rs7628674	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q27.1	HTR3C	rs7628674-?	NR	9E-6	(TAG 56:5)	0.15553631	[0.087-0.224] unit increase	Affymetrix [at least 2500000] (imputed)	N
1987	chr3	183801193	183801194	rs5855014	29356057	Du Z	2018-01-21	Prostate	Genetic risk of prostate cancer in Ugandan men.	Prostate cancer	560 Ugandan ancestry cases, 480 Ugandan ancestry controls	NA	3q27.1	NR	rs5855014-GC	0.85	3E-6		2.12	[1.55-2.91]	Illumina [17125421] (imputed)	N
1987	chr3	183843134	183843135	rs6806377	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q27.1	HSP90AA5P	rs6806377-A	0.487	1E-6	(MCP1 )	0.04	[NR] pg/mL increase	Illumina [899892]	N
1987	chr3	183875821	183875822	rs843370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q27.1	DVL3, EIF2B5	rs843370-C	0.369029	1E-12		0.0147805	[0.011-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr3	183875821	183875822	rs843370	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q27.1	DVL3, EIF2B5	rs843370-C	0.369089	6E-9		0.013229402	[0.0088-0.0177] unit decrease	Affymetrix [93095623] (imputed)	N
1987	chr3	183875821	183875822	rs843370	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q27.1	NR	rs843370-C	0.368454	2E-11		0.01345	[0.0095-0.0174] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
1987	chr3	183876511	183876512	rs1969253	22472876	Sullivan PF	2012-04-03	Mol Psychiatry	A mega-analysis of genome-wide association studies for major depressive disorder.	Major depressive disorder	9,240 European ancestry cases, 9,519 European ancestry controls	6,783 European ancestry cases, 50,695 European ancestry controls	3q27.1	HTR3D, HTR3C, HTR3E, EIF2B5, ECE2, DVL3, AP2M1, ABCF3, VWA5B2, MIR1224, ALG3, CAMK2N2	rs1969253-?	NR	5E-6				Affymetrix, Illumina, Perlegen [~ 1200000] (imputed)	N
1988	chr3	183905308	183905309	rs35315125	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	3q27.1		rs35315125-?	NR	9E-9				NR [~ 8900000] (imputed)	N
1988	chr3	183908001	183908002	rs843342	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q27.1	ABCF3	rs843342-T	0.4809	1E-9		0.0112	[0.0077-0.0147] unit decrease	Affymetrix [18391927] (imputed)	N
1988	chr3	183909162	183909163	rs843339	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q27.1		rs843339-?	NR	2E-9				NR [~ 8900000] (imputed)	N
1988	chr3	183916133	183916134	rs4549300	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q27.1	Intergenic	rs4549300-G	0.6565	9E-12		0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
1988	chr3	183920166	183920167	rs6787471	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q27.1	Intergenic	rs6787471-A	0.3432	2E-13	(MTAG)	0.0138	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1988	chr3	183925355	183925356	rs115483925	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q27.1	EIF2B5, ABCF3	rs115483925-?		3E-8				NR [7428630] (imputed)	N
1988	chr3	183936027	183936028	rs9870827	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q27.1		rs9870827-C	0.16	1E-9		6.11	z score increase	Affymetrix [9061022] (imputed)	N
1988	chr3	183950305	183950306	rs28603130	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q27.1		rs28603130-G	0.25	8E-17		8.33	z score increase	Affymetrix [9061022] (imputed)	N
1988	chr3	183950305	183950306	rs28603130	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q27.1	NR	rs28603130-G	0.2577	2E-8				NR [9056863] (imputed)	N
1988	chr3	183950305	183950306	rs28603130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q27.1	Intergenic	rs28603130-C	0.7537	3E-13	(MTAG)	0.014	[0.01-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
1988	chr3	183950305	183950306	rs28603130	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q27.1	Intergenic	rs28603130-C	0.7537	6E-12		0.0181	[0.013-0.023] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1988	chr3	183976102	183976103	rs11546878	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q27.1	EIF2B5	rs11546878-C	0.825608	3E-8		0.0139577	[0.009-0.0189] unit decrease	Affymetrix [NR] (imputed)	N
1988	chr3	183976102	183976103	rs11546878	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q27.1	NR	rs11546878-?	NR	5E-10				Affymetrix [~ 8270000] (imputed)	N
1988	chr3	183976102	183976103	rs11546878	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q27.1		rs11546878-?	NR	8E-11				NR [~ 8900000] (imputed)	N
1988	chr3	183976102	183976103	rs11546878	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	3q27.1	ECE2, PSMD2, EIF4GI	rs11546878-C	0.835	2E-12		0.0168	[0.012-0.022] unit increase	Illumina [246328]	N
1988	chr3	183990229	183990230	rs73187605	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q27.1	RDH14, NT5C1B-RDH14, NT5C1B	rs73187605-?		4E-8				NR [7428630] (imputed)	N
1988	chr3	183995340	183995341	rs1001817	33568662	Dashti HS	2021-02-10	Nat Commun	Genetic determinants of daytime napping and effects on cardiometabolic health.	Daytime nap	452,633 European ancestry individuals	541,333 European ancestry individuals	3q27.1	ECE2	rs1001817-C		2E-22		0.0083	[0.0067-0.0099] unit increase	Affymetrix [13304133] (imputed)	N
1988	chr3	183995340	183995341	rs1001817	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q27.1	NR	rs1001817-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
1988	chr3	183996067	183996068	rs3752904	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q27.1	NA	rs3752904-T	0.512	9E-13		0.0116	[0.0085-0.0147] unit decrease	NR [~ 27400000] (imputed)	N
1988	chr3	183997734	183997735	rs865809	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q27.1		rs865809-?	NR	1E-11				NR [~ 8900000] (imputed)	N
1988	chr3	184010047	184010048	rs3914188	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q27.1		rs3914188-?	NR	2E-11				NR [~ 8900000] (imputed)	N
1988	chr3	184010047	184010048	rs3914188	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3q27.1	ECE2	rs3914188-G	0.27	3E-7		2.2	[1.42-2.98] week decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
1988	chr3	184014755	184014756	rs6443959	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Immature fraction of reticulocytes	170,548 European ancestry individuals	NA	3q27.1	EIF2B5	rs6443959-T	0.7537	3E-9		0.02453471	[0.016-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
1988	chr3	184017840	184017841	rs144161168	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs144161168-G	0.983	1E-10				Affymetrix [10369434] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q27.1		rs11545169-T	NR	9E-9		0.015	[0.0099-0.0201] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q27.1	PSMD2	rs11545169-T	0.1613	8E-43		0.0352	[0.03-0.04] unit decrease	Affymetrix [18391927] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	244,730 European ancestry women	NA	3q27.1	PSMD2	rs11545169-T	0.161	9E-25		0.04	[0.034-0.046] unit decrease	Affymetrix [18391927] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	205,513 European ancestry men	NA	3q27.1	PSMD2	rs11545169-T	0.161	3E-21		0.04	[0.032-0.048] unit decrease	Affymetrix [18391927] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	3q27.1	PSMD2	rs11545169-G	0.8392	2E-8		0.019676	[0.013-0.027] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.1		rs11545169-?	NR	2E-23				NR [~ 8900000] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q27.1	Intergenic	rs11545169-T	0.1534	2E-10	(MTAG)	0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q27.1	Intergenic	rs11545169-G	0.8466	2E-8		0.0153	[0.01-0.021] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q27.1	Intergenic	rs11545169-T	0.1588	4E-9	(MTAG)	0.0106	[0.0071-0.0141] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1988	chr3	184020541	184020542	rs11545169	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q27.1	Intergenic	rs11545169-T	0.1606	3E-8	(MTAG)	0.0173	[0.011-0.023] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1988	chr3	184023060	184023061	rs7618629	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q27.1	NR	rs7618629-G	0.75382	5E-12		0.014982	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
1988	chr3	184023060	184023061	rs7618629	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	3q27.1	NR	rs7618629-G	0.772	2E-8		0.011685334	[0.0076-0.0158] unit increase	Affymetrix [NR] (imputed)	N
1988	chr3	184023060	184023061	rs7618629	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	3q27.1	NR	rs7618629-G	0.754	5E-8		0.00842028	[0.0054-0.0114] unit increase	NR [~ 9732723] (imputed)	N
1988	chr3	184025068	184025069	rs116149916	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs116149916-C	0.971	2E-18				Affymetrix [10369434] (imputed)	N
1989	chr3	184029231	184029232	rs10804892	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q27.1	EIF2B5	rs10804892-A	0.758479	8E-15		0.020349665	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184037254	184037255	rs7635741	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q27.1		rs7635741-G	NR	1E-8		0.014	[0.0091-0.0189] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
1989	chr3	184045798	184045799	rs939317	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q27.1	EIF4G1, EIF2B5	rs939317-G	0.745067	5E-9		0.014788717	[0.0098-0.0198] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184045798	184045799	rs939317	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q27.1	EIF4G1	rs939317-G	0.74	3E-12		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
1989	chr3	184056100	184056101	rs1881973	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	3q27.1	NR	rs1881973-C	0.368252	3E-9		0.0416656	[0.028-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
1989	chr3	184069125	184069126	rs73189617	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	3q27.1	NR	rs73189617-C	0.291252	5E-9		0.04044559	[0.027-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
1989	chr3	184069125	184069126	rs73189617	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	3q27.1	Intergenic	rs73189617-C	0.7011	4E-9		0.0185	[0.012-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
1989	chr3	184069125	184069126	rs73189617	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q27.1	CLCN2, EIF2B5	rs73189617-C	NR	2E-9		5.979	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1989	chr3	184072458	184072459	rs73189624	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q27.1		rs73189624-A	0.28	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
1989	chr3	184083535	184083536	rs75389224	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q27.1	POLR2H, EIF2B5	rs75389224-T	0.1207	9E-42		0.07660589	[0.066-0.088] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184084958	184084959	rs201759487	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	EIF2B5, POLR2H	rs201759487-T	0.620312	4E-13		0.029780049	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184085057	184085058	rs4912485	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	EIF2B5, POLR2H	rs4912485-C	0.628331	4E-13		0.0301648	[0.022-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184087416	184087417	rs9849502	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	15,171 African American or Afro-Caribbean and African ancestry individuals	NA	3q27.1	NR	rs9849502-C	0.719031	9E-15		0.101226	[0.076-0.127] SD units decrease	Affymetrix, Illumina [36877391] (imputed)	N
1989	chr3	184087416	184087417	rs9849502	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	3q27.1	NR	rs9849502-?	NR	1E-42		0.08144	[0.07-0.093] unit increase novel	Illumina [6108953] (imputed)	N
1989	chr3	184088986	184088987	rs28550009	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs28550009-A	0.883	9E-35				Affymetrix [10369434] (imputed)	N
1989	chr3	184088986	184088987	rs28550009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	EIF2B5	rs28550009-G	0.117049	4E-30		0.044187367	[0.037-0.052] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184088986	184088987	rs28550009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	EIF2B5	rs28550009-G	0.117058	8E-29		0.042817894	[0.035-0.05] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184088986	184088987	rs28550009	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q27.1	EIF2B5	rs28550009-G	0.118	4E-38		0.07372426	[0.063-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184089818	184089819	rs3804618	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q27.1		rs3804618-A	NR	1E-9		0.0215	[0.015-0.028] unit decrease	Affymetrix, Illumina [20535878] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	34553764	Little A	2021-09-06	Hum Mol Genet	Whole genome sequence analysis of platelet traits in the NHLBI trans-omics for precision medicine initiative.	Platelet count	14,392 African American individuals, 13,985 Hispanic or Latin American individuals, 32,129 European ancestry individuals, 681 East Asian ancestry individuals, 13 individuals	10,664 individuals, 10,694 African American individuals, 7,287 Hispanic or Latin American individuals, 7,857 African ancestry individuals	3q27.1		rs78565404-T	0.068644	7E-24		7.5148387	[6.05-8.98] unit increase	NR [NR]	N
1989	chr3	184090241	184090242	rs78565404	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3q27.1		rs78565404-C	0.946	2E-30				Affymetrix [10369434] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	THPO	rs78565404-T	0.054063	1E-168		0.1486616	[0.14-0.16] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	THPO	rs78565404-T	0.054048	2E-138		0.13395959	[0.12-0.14] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q27.1	THPO	rs78565404-T	0.0538689999999999	4E-10		0.031587847	[0.022-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q27.1	THPO	rs78565404-T	0.0538	4E-74		0.1550234	[0.14-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q27.1	THPO	rs78565404-T	0.0538	5E-63		0.1420199	[0.13-0.16] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184090241	184090242	rs78565404	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals	3q27.1	THPO	rs78565404-T		2E-50	(PLT)	0.136	[0.12-0.15] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
1989	chr3	184090265	184090266	rs6141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q27.1		rs6141-T	NR	2E-192		0.0565	[0.053-0.06] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
1989	chr3	184090265	184090266	rs6141	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	3q27.1		rs6141-T	0.445873	5E-68		0.0581474	[0.052-0.065] unit increase	Illumina [13478928] (imputed)	N
1989	chr3	184090265	184090266	rs6141	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	3q27.1		rs6141-C	0.469	9E-90				Affymetrix [10369434] (imputed)	N
1989	chr3	184090265	184090266	rs6141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	THPO	rs6141-T	0.531933	3E-43		0.05232224	[0.045-0.06] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184090265	184090266	rs6141	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	THPO	rs6141-T	0.531916	7E-45		0.053854123	[0.046-0.061] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184090265	184090266	rs6141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.1	NR	rs6141-T	0.524543	7E-290				Affymetrix, Illumina [24588908] (imputed)	N
1989	chr3	184090265	184090266	rs6141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q27.1	NR	rs6141-T	0.534656	8E-231		0.060542	[0.057-0.064] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
1989	chr3	184090265	184090266	rs6141	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	3q27.1	NR	rs6141-C	0.552827	5E-59		0.061587	[0.054-0.069] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
1989	chr3	184090265	184090266	rs6141	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	3q27.1	THPO	rs6141-?	NR	7E-50		0.06477	[0.056-0.073] unit increase novel	Illumina [6108953] (imputed)	N
1989	chr3	184090265	184090266	rs6141	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	3q27.1	THPO, POLR2H, CHRD	rs6141-?	0.53226	3E-6		2.3809524	[1.64-3.45]	Illumina [1556551]	N
1989	chr3	184090265	184090266	rs6141	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Platelet count	38,891 European ancestry individuals, 1,661 Val Borbera (founder/genetic isolate) individuals, 521 Carlantino (founder/genetic isolate) individuals, 1,198 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals, 4,292 Sardinian (founder/genetic isolate) individuals	Up to 16,949 European ancestry individuals, 854 Cliento (founder/genetic isolate) individuals, 1,035 Talana (founder/genetic isolate) individuals	3q27.1	THPO	rs6141-T	NR	6E-8		2.467	[1.57-3.36] 10^9/l increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
1989	chr3	184090265	184090266	rs6141	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Platelet count	14,806 Japanese ancestry individuals	NA	3q27.1	THPO, CHRD	rs6141-T	0.45	5E-11		0.076	[0.052-0.100] unit increase	Illumina [561583]	N
1989	chr3	184091101	184091102	rs572476245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs572476245-G	0.00832599999999994	1E-85		0.2594458	[0.23-0.29] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184091101	184091102	rs572476245	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs572476245-G	0.00832299999999997	1E-67		0.22920173	[0.2-0.26] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184091383	184091383	rs55827759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs55827759-TGGAA	0.03699	1E-14		0.04763565	[0.036-0.06] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184091383	184091383	rs55827759	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs55827759-TGGAA	0.036991	2E-13		0.045127902	[0.033-0.057] unit decrease	Affymetrix [93095623] (imputed)	N
1989	chr3	184091496	184091497	rs9870912	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	335,030 European ancestry, NR ancestry individuals	NA	3q27.1		rs9870912-?	NR	5E-8				Affymetrix [NR] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet-to-lymphocyte ratio	234,552 European ancestry individuals	100,478 European ancestry individuals	3q27.1		rs34623301-G	0.784	9E-35				Affymetrix [10369434] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	34107879	Hu Y	2021-06-09	BMC Genomics	Multi-ethnic genome-wide association analyses of white blood cell and platelet traits in the Population Architecture using Genomics and Epidemiology (PAGE) study.	Platelet count	16,201 African American or Afro-Caribbean individuals	NA	3q27.1		rs34623301-A	0.5429	7E-7		0.0625	[0.038-0.087] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs34623301-A	0.21615	9E-109		0.06778731	[0.062-0.074] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	EIF2B5, THPO	rs34623301-A	0.21615	4E-82		0.058772963	[0.053-0.065] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q27.1	THPO, EIF2B5	rs34623301-A	0.2154	4E-65		0.07590098	[0.067-0.085] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184093039	184093040	rs34623301	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q27.1	THPO, EIF2B5	rs34623301-A	0.2154	2E-50		0.06633327	[0.058-0.075] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184097084	184097085	rs2855306	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	3q27.1	CHRD	rs2855306-G	0.310276561975415	6E-8	(G_Bifidobacterium_HB)	0.384626	[0.25-0.52] unit decrease	Illumina [7711310] (imputed)	N
1989	chr3	184099271	184099271	rs149400260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.1	CHRD	rs149400260-CT	0.009795	4E-46		0.16364385	[0.14-0.19] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184099271	184099271	rs149400260	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.1	CHRD	rs149400260-CT	0.00979399999999997	4E-42		0.15554355	[0.13-0.18] unit increase	Affymetrix [93095623] (imputed)	N
1989	chr3	184099271	184099271	rs149400260	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q27.1	CHRD	rs149400260-CT	0.0097	1E-9		0.1149013	[0.078-0.152] unit increase	Affymetrix [~ 2500000] (imputed)	N
1989	chr3	184099341	184099342	rs3749228	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q27.1	NR	rs3749228-C	0.062170999999999976	3E-10		0.016102	[0.011-0.021] unit increase	Affymetrix [16585854] (imputed)	N
1989	chr3	184099341	184099342	rs3749228	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q27.1	NR	rs3749228-C	0.062170999999999976	8E-6		0.0134492	[0.0077-0.0192] unit increase	Affymetrix [16585866] (imputed)	N
1989	chr3	184106492	184106493	rs2293606	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q27.1	NR	rs2293606-G	0.056069000000000035	8E-10		0.0108059	[0.0072-0.0144] unit increase	Affymetrix [16582909] (imputed)	N
1989	chr3	184106492	184106493	rs2293606	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q27.1	NR	rs2293606-G	0.056069000000000035	6E-6		0.00906117	[0.0051-0.013] unit increase	Affymetrix [16582965] (imputed)	N
1990	chr3	184202091	184202091	rs370336606	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q27.1		rs370336606-?	NR	3E-8				Affymetrix [NR] (imputed)	N
1990	chr3	184216129	184216130	rs3930234	21529783	Heath AC	2011-04-27	Biol Psychiatry	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Alcoholism (alcohol use disorder factor score)	2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls	3,393 European ancestry individuals	3q27.1	intergenic	rs3930234-C	0.15	8E-6		0.104	[NR] unit increase	Illumina [~ 300000]	N
1990	chr3	184223929	184223930	rs4912575	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q27.1	NR	rs4912575-?	NR	7E-10				Affymetrix [NR]	N
1990	chr3	184227582	184227583	rs62286033	33293549	Sargurupremraj M	2020-12-08	Nat Commun	Cerebral small vessel disease genomics and its implications across the lifespan.	White matter hyperintensity volume x hypertension interaction (2df)	2,469 African American individuals	NA	3q27.1	EPHB3	rs62286033-T	0.9411	4E-10				Affymetrix, Illumina [9900000] (imputed)	N
1990	chr3	184233082	184233083	rs73179231	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q27.1		rs73179231-C	0.45	5E-9		5.85	z score increase	Affymetrix [9061022] (imputed)	N
1990	chr3	184233082	184233083	rs73179231	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q27.1	NR	rs73179231-C	0.4811	4E-8				NR [9056863] (imputed)	N
1990	chr3	184273467	184273468	rs114081723	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia sp001304935 abundance in stool	5,959 Finnish ancestry individuals	NA	3q27.1		rs114081723-A	0.0227699	2E-8		0.180116	[0.12-0.24] unit increase	Illumina [7980478] (imputed)	N
1990	chr3	184281233	184281234	rs79151247	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3q27.1	EPHB3	rs79151247-A	NR	5E-6	(AA)			Illumina [up to 11995908] (imputed)	N
1990	chr3	184281233	184281234	rs79151247	25555482	Gelernter J	2014-09-16	Biol Psychiatry	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	3q27.1	EPHB3	rs79151247-A	NR	5E-6				Illumina [up to 11995908] (imputed)	N
1991	chr3	184303931	184303932	rs10049244	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q27.1	NR	rs10049244-G	0.192	4E-6	(IFNalpha_CXCL9_of_Monocytes)			Illumina [5084123] (imputed)	N
1991	chr3	184321689	184321690	rs115230032	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Prostate cancer	7,438 White British ancestry cases, 118,206 White British ancestry controls	NA	3q27.1		rs115230032-?	NR	6E-6		1.24886	[1.15-1.35]	NR [680312]	N
1991	chr3	184331241	184331242	rs4074869	24869959	Jacobs LC	2014-08-01	JAMA Dermatol	Intrinsic and extrinsic risk factors for sagging eyelids.	Upper eyelid sagging severity	6,631 European ancestry individuals	NA	3q27.1	Intergenic	rs4074869-G	0.49	4E-7	(dominant)	0.12	[NR] unit decrease	Illumina [at least 2149245] (imputed)	N
1991	chr3	184333169	184333169	rs58022575	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	3q27.1		rs58022575-G	0.469424034	3E-26				Illumina [7417619] (imputed)	N
1991	chr3	184333169	184333169	rs58022575	29459680	Claes P	2018-02-19	Nat Genet	Genome-wide mapping of global-to-local genetic effects on human facial shape.	Facial morphology traits (63 three-dimensional facial segments)	2,329 European ancestry individuals	1,719 European ancestry individuals	3q27.1	EPHB3, DVL3	rs58022575-?	NR	8E-10	(facial module 20)			Illumina [9478608] (imputed)	N
1991	chr3	184339756	184339757	rs13097965	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Nose size	67,023 European ancestry individuals	NA	3q27.1	EPHB3, MAGEF1	rs13097965-?	NR	2E-15		0.033	[0.041-0.025] unit decrease	Illumina [12039491] (imputed)	N
1991	chr3	184347097	184347098	rs13092917	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Strep throat	52,487 European ancestry cases, 22,017 European ancestry controls	NA	3q27.1	NR	rs13092917-?	NR	6E-6		0.029	[0.016-0.042] unit increase	Illumina [at least 560000] (imputed)	N
1991	chr3	184359056	184359057	rs116309807	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 10, width of nasal floor)	2,187 European ancestry individuals	NA	3q27.1	NR	rs116309807-T	0.03462	4E-6		0.3816	[0.22-0.54] unit decrease	Illumina [10677593] (imputed)	N
1991	chr3	184375947	184375948	rs56081252	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 6)	3,566 European ancestry individuals	4,680 European ancestry individuals	3q27.1		rs56081252-A	0.348852459	5E-11				Illumina [7417619] (imputed)	N
1991	chr3	184376851	184376852	rs4074283	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q27.1		rs4074283-?	NR	4E-8				NR [~ 8900000] (imputed)	N
1991	chr3	184391572	184391573	rs9865980	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q27.1		rs9865980-?	NR	3E-8				NR [~ 8900000] (imputed)	N
1991	chr3	184409777	184409778	rs10937185	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (hip)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	3q27.1	NR	rs10937185-A	0.139	2E-7	(Females)	0.324327	[0.2-0.45] unit decrease	Illumina [~ 6600000] (imputed)	N
1991	chr3	184412701	184412702	rs7621895	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Parahippocampal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q27.1	NR	rs7621895-?		8E-6				Illumina [4322238] (imputed)	N
1992	chr3	184442448	184442449	rs3733164	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q27.1	NR	rs3733164-G	0.491635	2E-8		0.0171667	[0.011-0.023] unit increase	NR [19129689] (imputed)	N
1992	chr3	184459666	184459667	rs11923588	30361487	Yan Q	2018-10-25	Mol Psychiatry	Genome-wide association study of brain amyloid deposition as measured by Pittsburgh Compound-B (PiB)-PET imaging.	Cerebral amyloid deposition (PET imaging)	983 European ancestry individuals	NR	3q27.1	MAGEF1, LOC101928992	rs11923588-T	0.06	6E-6		0.18	[NR] unit decrease	Illumina [at least 7000000] (imputed)	N
1992	chr3	184462671	184462672	rs183494100	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Monokine induced by gamma interferon levels	3,685 Finnish ancestry individuals	NA	3q27.1	NR	rs183494100-G	NR	6E-6		0.7328	[0.41-1.05] SD units increase	NR [10700000] (imputed)	N
1992	chr3	184464708	184464709	rs12497589	33692830	Indencleef K	2021-02-22	Front Genet	The Intersection of the Genetic Architectures of Orofacial Clefts and Normal Facial Variation.	Facial morphology traits (59 NSCL/P endophenotypic segments)	8,246 European ancestry individuals	NA	3q27.1	NR	rs12497589-?	NR	2E-8	(Quadrant III (Mandible), Segment 24)	0.019280154	NR unit increase	NR [7417619] (imputed)	N
1992	chr3	184474786	184474787	rs182342623	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	3q27.1	NR	rs182342623-C	NR	7E-6		0.4173	[0.24-0.6] SD units increase	NR [10700000] (imputed)	N
1992	chr3	184475363	184475364	rs4686398	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q27.1	VPS8	rs4686398-?	NR	2E-6	(hydroxyproline)	3.4299445	[2-4.86] unit decrease	Affymetrix [at least 2500000] (imputed)	N
1992	chr3	184484176	184484177	rs9854831	33824429	Fjukstad KK	2021-04-06	Pharmacogenomics J	Genetic variants associated with cardiometabolic abnormalities during treatment with selective serotonin reuptake inhibitors: a genome-wide association study.	LDL levels x SSRI levels (escitalopram or citalopram) interaction in schizophrenia or bipolar disorder	181 European ancestry individuals	NA	3q27.1	RP11-329B9.1	rs9854831-A	NR	5E-7		8.73719	[6.44-11.03] unit decrease	Illumina [NR] (imputed)	N
1992	chr3	184514612	184514613	rs4686760	21810271	Antoni G	2011-08-02	BMC Med Genet	Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.	vWF and FVIII levels	1,624 European ancestry individuals	NA	3q27.1	VPS8	rs4686760-G	0.46	1E-6	(vWF level)	0.15	[0.09-0.21] IU/dL decrease	Illumina [442728]	N
1992	chr3	184532809	184532810	rs73188815	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma levels	7,701 Finnish ancestry individuals	NA	3q27.2	NR	rs73188815-G		8E-6		0.3813	[0.21-0.55] SD units increase	NR [10700000] (imputed)	N
1993	chr3	184549538	184549539	rs10513799	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	3q27.2	Intergenic	rs10513799-A	0.1954	5E-8	(MTAG)	0.0158	[0.01-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1993	chr3	184612320	184612321	rs58693904	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	3q27.2	VPS8	rs58693904-T	NR	4E-9		1.5086	NR	Illumina [up to 4495750] (imputed)	N
1993	chr3	184648314	184648315	rs74927619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.2	NR	rs74927619-A	0.00757285	6E-10				Affymetrix, Illumina [24649327] (imputed)	N
1993	chr3	184648314	184648315	rs74927619	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q27.2	NR	rs74927619-A	0.007834	7E-12		0.072095	[0.052-0.093] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
1994	chr3	184717900	184717901	rs9815925	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	3q27.2	VPS8	rs9815925-A	0.89	9E-6	(Left HG thickness)	0.0374	unit increase	Affymetrix, Illumina [4103035] (imputed)	N
1994	chr3	184781829	184781830	rs6785034	30804566	Lane JM	2019-02-25	Nat Genet	Biological and clinical insights from genetics of insomnia symptoms.	Insomnia symptoms (never/rarely vs. sometimes/usually)	345,022 European ancestry cases, 108,357 European ancestry controls	17,140 European ancestry cases, 61,850 European ancestry controls	3q27.2	VPS8/C3orf70	rs6785034-A	0.42201	2E-8		1.03	[1.02-1.04]	Affymetrix [14661600] (imputed)	N
1994	chr3	184788788	184788789	rs116831376	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	3q27.2		rs116831376-C	0.966906	8E-6		0.0318474	[0.018-0.046] unit decrease	Illumina [13900000] (imputed)	N
1995	chr3	184855869	184855870	rs76864625	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	Low myopia	11,197 European ancestry low myopic cases, 21,416 European ancestry emmetropia controls	NA	3q27.2	NR	rs76864625-?	NR	6E-6		0.141144	[0.08-0.202] unit increase	NR [13958389] (imputed)	N
1995	chr3	184864142	184864143	rs12635413	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q27.2	Intergenic	rs12635413-T	0.4402	4E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1995	chr3	184875153	184875154	rs4419361	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q27.2	Intergenic	rs4419361-A	0.414	4E-9	(MTAG)	0.0098	[0.0065-0.0131] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
1995	chr3	184876782	184876783	rs7647854	27519822	Power RA	2016-05-24	Biol Psychiatry	Genome-wide Association for Major Depression Through Age at Onset Stratification: Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium.	Major depressive disorder	3,869 European ancestry 50% oldest-onset cases, 5,051 European ancestry cases, 2,691 European ancestry controls, 6,828 unknown controls	6,107 European ancestry, Han Chinese ancestry and unknown ancestry 50% oldest-onset cases, 7,131 European ancestry, Han Chinese ancestry and unknown ancestry cases, 104,402 European ancestry controls, 5,537 Han Chinese ancestry controls, 14,291 unknown ancestry controls	3q27.2	C3orf70, VPS8, EHHADH, MAP3K13	rs7647854-G	0.16	5E-11	(50% oldest-onset cases)	1.16	[1.11-1.21]	NR [1235109] (imputed)	N
1995	chr3	184876782	184876783	rs7647854	21042317	Wray NR	2010-11-02	Mol Psychiatry	Genome-wide association study of major depressive disorder: new results, meta-analysis, and lessons learned.	Major depressive disorder	2,431 European ancestry cases, 3,673 European ancestry controls	3,332 European ancestry cases, 3,228 European ancestry controls	3q27.2	C3orf70, EHHADH	rs7647854-G	0.16	5E-6		1.19	[NR]	Affymetrix, Illumina [1251157] (imputed)	N
1995	chr3	184877625	184877626	rs10937208	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q27.2	NR	rs10937208-G	0.136	1E-10		0.0443	[0.031-0.058] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
1995	chr3	184881772	184881773	rs200488701	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Macrophage inflammatory protein 1a levels	3,522 Finnish ancestry individuals	NA	3q27.2	NR	rs200488701-C	NR	6E-6		0.2863	[0.16-0.41] SD units increase	NR [10700000] (imputed)	N
1995	chr3	184882014	184882015	rs61579137	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q27.2	NR	rs61579137-G	0.6599	5E-11		0.0309	[0.022-0.04] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
1995	chr3	184894477	184894478	rs6773982	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q27.2	NR	rs6773982-?	NR	4E-6		4.614	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
1995	chr3	184920867	184920868	rs11322724	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	3q27.2	NR	rs11322724-T	NR	2E-10		0.0211	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
1996	chr3	184945848	184945849	rs7374394	19734545	Need AC	2009-09-04	Hum Mol Genet	A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.	Cognitive performance	Up to 1,295 individuals	NA	3q27.2	EHHADH	rs7374394-?	0.2035	2E-6	(IED)			Illumina [475971]	N
1996	chr3	184963220	184963221	rs114730935	34417442	Cheng S	2021-08-20	Transl Psychiatry	Traumatic events during childhood and its risks to substance use in adulthood: an observational and genome-wide by environment interaction study in UK Biobank.	Smoking x traumatic event in childhood (sexually molested) interaction	127,766 European ancestry individuals	NA	3q27.2		rs114730935-?	NR	5E-8		2.3927	[1.53-3.25] unit increase	Affymetrix [NR] (imputed)	N
1996	chr3	185072307	185072308	rs11713276	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure in major depressive disorder-negative individuals	10,701 European ancestry cases, 39,677 European ancestry controls	NA	3q27.2	NR	rs11713276-G	0.085638	1E-6		1.1415524	[1.09-1.2]	Affymetrix [7791636] (imputed)	N
1997	chr3	185110398	185110399	rs6777575	33009551	Zhang J	2020-10-03	Cereb Cortex	Genome-Wide Association Analysis of Neonatal White Matter Microstructure.	Neonatal white matter microstructure	471 European, Black, Asian, Native American or unknown ancestry individuals	NA	3q27.2	MAP3K13	rs6777575-G	NR	5E-7		1.29	[NR] unit increase	Affymetrix [NR] (imputed)	N
1997	chr3	185141856	185141857	rs7629245	22837378	Wilk JB	2012-07-26	Am J Respir Crit Care Med	Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.	Airflow obstruction	up to 3,368 European ancestry cases, up to 29,507 European ancestry controls	331 European ancestry cases, 2,550 European ancestry controls	3q27.2	MAP3K13	rs7629245-T	0.15	9E-6	(Smoker)	1.22	[NR]	Affymetrix, Illumina [up to 2500000] (imputed)	N
1997	chr3	185145324	185145325	rs142358937	31235810	Fung K	2019-06-24	Sci Rep	Genome-wide association study identifies loci for arterial stiffness index in 127,121 UK Biobank participants.	Arterial stiffness index	127,121 European ancestry individuals	NA	3q27.2	MAP3K13	rs142358937-C	0.988	1E-6		0.093	[0.056-0.13] unit decrease	Affymetrix [~ 10446505] (imputed)	N
1998	chr3	185259828	185259829	rs147676117	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q27.2	LIPH	rs147676117-A	NR	8E-9		0.0291786	[0.019-0.039] unit increase	Affymetrix [323123] (imputed)	N
1998	chr3	185263466	185263467	rs551936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.2	LIPH	rs551936-C	NR	4E-8		0.0189956	[0.012-0.026] unit increase	Affymetrix [321016] (imputed)	N
1998	chr3	185263466	185263467	rs551936	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q27.2	LIPH	rs551936-C	NR	8E-9		0.0216743	[0.014-0.029] unit increase	Affymetrix [323123] (imputed)	N
1998	chr3	185273509	185273510	rs7631981	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	3q27.2	NR	rs7631981-G	0.696637	7E-13		0.00848225	[0.006-0.011] unit increase	Affymetrix [16582621] (imputed)	N
1998	chr3	185273509	185273510	rs7631981	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	3q27.2	NR	rs7631981-G	0.696637	4E-8		0.00691835	[0.0043-0.0096] unit increase	Affymetrix [16582614] (imputed)	N
1998	chr3	185274779	185274780	rs7649167	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Creatinine levels	110,051 European ancestry individuals	NA	3q27.2		rs7649167-T	0.675276	5E-10		0.0237075	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
1998	chr3	185285860	185285861	rs114143569	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q27.2		rs114143569-G	NR	3E-8		0.0137	[0.0088-0.0186] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
1998	chr3	185290103	185290104	rs181744642	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference	1,254 whole genome sequenced European ancestry individuals, 3,074 whole genome sequenced individuals, 29,716 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 701 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,050 Mylopotamos (founder/genetic isolate) individuals, 883 Pomak (founder/genetic isolate) individuals	205,909 European ancestry individuals	3q27.2	SENP2	rs181744642-A	0.9917	7E-7		0.2705	[0.16-0.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1998	chr3	185296019	185296020	rs141591215	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q27.2	SENP2	rs141591215-A	0.9437	9E-7		0.0809	[0.049-0.113] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1998	chr3	185296601	185296602	rs11918734	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	3q27.2	NR	rs11918734-T	0.74	1E-9		0.0125	[0.0084-0.0166] unit decrease	NR [NR]	N
1998	chr3	185298867	185298868	rs6779368	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q27.2	SENP2	rs6779368-A	0.6608	7E-21		0.0033	[0.0025-0.0041] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
1998	chr3	185302097	185302098	rs13095912	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	3q27.2	SENP2	rs13095912-?	NR	7E-6	(Male, Post-puberty)	0.114	[0.065-0.163] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
1998	chr3	185307362	185307363	rs4686683	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Systolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q27.2	SENP2	rs4686683-T		3E-6		0.183	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1998	chr3	185307362	185307363	rs4686683	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	80,792 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 7,243 East Asian ancestry individuals, 461 South Asian ancestry individuals	NA	3q27.2	SENP2	rs4686683-T		8E-6	(EA)	0.177	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1998	chr3	185307362	185307363	rs4686683	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Diastolic blood pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	3q27.2	SENP2	rs4686683-T		4E-13		0.172	unit decrease	Affymetrix [at least 2696785] (imputed)	N
1998	chr3	185317673	185317674	rs12374077	28135244	Warren HR	2017-01-30	Nat Genet	Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk.	Diastolic blood pressure	140,886 European ancestry individuals	190,318 European ancestry individuals	3q27.2	SENP2	rs12374077-C	0.35	9E-9		0.163	[0.1-0.22] unit increase	Affymetrix [~ 9800000] (imputed)	N
1998	chr3	185322642	185322643	rs13081203	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q27.2	SENP2	rs13081203-G	0.6549	2E-12		7.072	NR z score increase	Illumina [26237160] (imputed)	N
1998	chr3	185322642	185322643	rs13081203	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q27.2	ETV5, KNG1	rs13081203-?	NR	2E-10				Affymetrix, Illumina [at least 5248638] (imputed)	N
1998	chr3	185322642	185322643	rs13081203	29203360	Sanders MGH	2017-12-02	J Invest Dermatol	The genetics of seborrheic dermatitis: a candidate gene approach and pilot genome-wide association study.	Seborrheic dermatitis	609 European and unknown ancestry cases, 3441 European and unknown ancestry controls	NA	3q27.2	SENP2	rs13081203-?	NR	4E-6				Illumina [9008729] (imputed)	N
1998	chr3	185328670	185328671	rs9714159	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q27.2	NR	rs9714159-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
1998	chr3	185331164	185331165	rs6762208	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	up to 77,898 European ancestry individuals, up to 7,695 African American individuals	up to 111,874 European ancestry individuals	3q27.2	SENP2	rs6762208-A	0.343416	1E-11		0.230826	[0.16-0.3] ms decrease	Illumina [162199]	N
1998	chr3	185331164	185331165	rs6762208	30012220	Prins BP	2018-07-17	Genome Biol	Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.	QRS duration	77,898 European ancestry individuals	NA	3q27.2	SENP2	rs6762208-A	0.345264199283227	5E-11		0.31166893	[0.22-0.4] ms decrease	Illumina [213295]	N
1998	chr3	185331164	185331165	rs6762208	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	3q27.2	IGF2BP2	rs6762208-A	0.367	3E-8		1.03	[1.02-1.05]	Affymetrix, Illumina [247470]	N
1998	chr3	185331164	185331165	rs6762208	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	3q27.2	IGF2BP2	rs6762208-A	0.367	2E-6		1.03	[1.01-1.04]	Affymetrix, Illumina [247470]	N
1999	chr3	185341614	185341614	rs545261249	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.2	SENP2	rs545261249-C	0.585789	8E-9	(62 ms)	0.0331315	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1999	chr3	185341614	185341614	rs545261249	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.2	SENP2	rs545261249-C	0.585789	4E-8	(54 ms)	0.0319366	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1999	chr3	185341614	185341614	rs545261249	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.2	SENP2	rs545261249-C	0.585789	3E-8	(70 ms)	0.0319803	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
1999	chr3	185341614	185341614	rs545261249	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.2	SENP2	rs545261249-C	0.585789	2E-8	(60 ms)	0.0321834	[0.021-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
1999	chr3	185348350	185348351	rs4687477	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q27.2		rs4687477-?	NR	3E-12				NR [~ 8900000] (imputed)	N
1999	chr3	185350705	185350706	rs7638853	30046033	van Setten J	2018-07-25	Nat Commun	PR interval genome-wide association meta-analysis identifies 50 loci associated with atrial and atrioventricular electrical activity.	PR interval	92,340 European ancestry individuals	NA	3q27.2	SENP2	rs7638853-A	0.34	2E-8		0.7	[0.46-0.94] ms decrease	Affymetrix, Illumina [2712613] (imputed)	N
1999	chr3	185351650	185351651	rs1816959	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q27.2	SENP2	rs1816959-A	0.663	2E-13		0.4945	[0.36-0.63] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
1999	chr3	185354215	185354216	rs56065557	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q27.2	SENP2	rs56065557-C	0.3244	9E-24		0.0029	[0.0023-0.0035] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
1999	chr3	185360577	185360578	rs9880232	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q27.2		rs9880232-A	NR	4E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
1999	chr3	185360577	185360578	rs9880232	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	3q27.2	NR	rs9880232-A	NR	7E-10		0.0163	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
1999	chr3	185371171	185371172	rs57158761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q27.2	NR	rs57158761-A	0.563686	2E-27		0.00861913	[0.007-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
1999	chr3	185371171	185371172	rs57158761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	3q27.2	NR	rs57158761-A	0.563749	9E-18		0.00983256	[0.0074-0.0123] unit increase	Affymetrix [16585854] (imputed)	N
1999	chr3	185371171	185371172	rs57158761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q27.2	NR	rs57158761-A	0.563686	1E-16		0.00716432	[0.0053-0.009] unit increase	Affymetrix [16582965] (imputed)	N
1999	chr3	185371171	185371172	rs57158761	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	3q27.2	NR	rs57158761-A	0.563749	1E-8		0.0074537	[0.0047-0.0103] unit increase	Affymetrix [16585866] (imputed)	N
1999	chr3	185379084	185379085	rs55966029	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q27.2	NR	rs55966029-?	NR	7E-7		4.953	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
1999	chr3	185384986	185384987	rs78939929	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.2		rs78939929-?	NR	6E-15				NR [~ 8900000] (imputed)	N
1999	chr3	185433438	185433439	rs180743875	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2, C3orf65	rs180743875-T	NR	2E-14		0.0382704	[0.028-0.048] unit increase	Affymetrix [321016] (imputed)	N
1999	chr3	185445084	185445085	rs182096771	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q27.2	IGF2BP2-AS1, IGF2BP2	rs182096771-C	0.9965	6E-6		0.335	[0.19-0.48] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
1999	chr3	185456174	185456175	rs58983732	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q27.2		rs58983732-?	NR	8E-8				NR [~ 8900000] (imputed)	N
2000	chr3	185467738	185467739	rs6766484	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q27.2	IGF2BP2	rs6766484-?	NR	8E-6	(propionic acid)	1.4146177	[0.8-2.03] unit increase	Affymetrix [at least 2500000] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q27.2	IGF2BP2	rs35430985-A	0.268418	1E-27		0.027738161	[0.023-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q27.2	IGF2BP2	rs35430985-A	0.268459	8E-20		0.023108315	[0.018-0.028] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.2	NR	rs35430985-A	0.25626	7E-24				Affymetrix, Illumina [24588908] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q27.2	NR	rs35430985-A	0.269567	5E-25		0.021341	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	3q27.2	IGF2BP2	rs35430985-A	0.266787	7E-9		0.036945827	[0.024-0.049] unit increase	Affymetrix [7288503] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q27.2	IGF2BP2	rs35430985-A	0.27	1E-13		0.03068133	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2000	chr3	185488302	185488303	rs35430985	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q27.2	IGF2BP2	rs35430985-A	0.2701	7E-10		0.02543329	[0.017-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2000	chr3	185490183	185490184	rs73175572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q27.2		rs73175572-G	NR	9E-18		0.0284	[0.022-0.035] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2000	chr3	185490183	185490184	rs73175572	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q27.2		rs73175572-G	NR	2E-68		0.0463	[0.041-0.051] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2000	chr3	185490183	185490184	rs73175572	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q27.2	IGF2BP2	rs73175572-A	0.8751	6E-14		0.0783	[0.058-0.099] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2000	chr3	185490733	185490734	rs7648605	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.2	NR	rs7648605-G	0.245674	5E-15				Affymetrix, Illumina [24246363] (imputed)	N
2000	chr3	185495319	185495320	rs13092876	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	3q27.2	NR	rs13092876-G	0.6606	4E-44		0.1299	[0.11-0.15] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
2000	chr3	185495319	185495320	rs13092876	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q27.2	IGF2BP2	rs13092876-A	0.312	2E-66		1.13	[1.12-1.15]	Affymetrix, Illumina [11800000] (imputed)	N
2000	chr3	185495319	185495320	rs13092876	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3q27.2	IGF2BP2	rs13092876-A	0.34	6E-39		1.14	1.12-1.16	Illumina [12557761] (imputed)	N
2000	chr3	185495319	185495320	rs13092876	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	3q27.2	IGF2BP2	rs13092876-A	0.333	6E-6		0.031	[0.017-0.045] unit increase	Affymetrix [7947838] (imputed)	N
2000	chr3	185496868	185496868	rs544527308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs544527308-CT	NR	2E-9		0.034646	[0.023-0.046] unit increase	Affymetrix [321169] (imputed)	N
2000	chr3	185497552	185497552	rs5855072	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs5855072-TA	NR	1E-14		0.0238147	[0.018-0.03] unit increase	Affymetrix [321169] (imputed)	N
2000	chr3	185497553	185497553	rs397978231	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q27.2		rs397978231-TA	NR	3E-79		0.126	[0.11-0.14] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2000	chr3	185497634	185497635	rs4376068	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q27.2		rs4376068-C	NR	2E-9		0.0128	[0.0087-0.0169] unit decrease	Affymetrix, Illumina [20535844] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Type 2 diabetes	9,486 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	3q27.2	IGF2BP2	rs6780171-A	0.30818	3E-6		1.173	[1.097 - 1.254]	Illumina [5399457] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Peak expiratory flow	321,047 European ancestry individuals	24,218 European ancestry individuals	3q27.2	IGF2BP2	rs6780171-A	0.3129	6E-19		0.0241	[0.019-0.029] unit decrease	Affymetrix [19819130] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	3q27.2	IGF2BP2	rs6780171-A	0.3129	3E-7		0.013	[0.0081-0.0179] unit decrease	Affymetrix [19819130] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	FEV1	321,047 European ancestry individuals	79,005 European ancestry individuals	3q27.2	IGF2BP2	rs6780171-A	0.3129	6E-12		0.0174	[0.013-0.022] unit decrease	Affymetrix [19819130] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q27.2		rs6780171-?	NR	4E-12				NR [~ 8900000] (imputed)	N
2000	chr3	185503455	185503456	rs6780171	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.2	IGF2BP2	rs6780171-A	0.3138	9E-56		1.14	[1.12-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2000	chr3	185505786	185505787	rs4481184	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and type 2 diabetes (pairwise)	418,152 European ancestry individuals, 31,291 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3q27.2	IGF2BP2	rs4481184-C	0.6958	5E-22				Affymetrix, Illumina [2331072] (imputed)	N
2000	chr3	185506891	185506892	rs4414887	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	3q27.2	IGF2BP2	rs4414887-T	0.32	4E-13		1.13	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
2000	chr3	185507298	185507299	rs11705729	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood sugar levels	93,146 Japanese ancestry individuals	NA	3q27.2	IGF2BP2	rs11705729-?	NR	3E-9		0.02946	[0.02-0.039] unit increase novel	Illumina [6108953] (imputed)	N
2000	chr3	185507515	185507518	rs547194177	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Type 2 diabetes	6,967 European ancestry cases, 49,670 European ancestry controls	NA	3q27.2		rs547194177-A	0.3137786	4E-10		1.13		Affymetrix [15533686] (imputed)	N
2000	chr3	185508590	185508591	rs11927381	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	3q27.2	IGF2BP2	rs11927381-A		1E-7		0.0049	unit increase	Illumina [at least 200000]	N
2000	chr3	185508590	185508591	rs11927381	27189021	Cook JP	2016-05-18	Eur J Hum Genet	Multi-ethnic genome-wide association study identifies novel locus for type 2 diabetes susceptibility.	Type 2 diabetes	746 African American cases, 2,825 African American controls, 743 East Asian ancestry cases, 3,992 East Asian ancestry controls, 7,111 European ancestry cases, 49,688 European ancestry controls, 1,147 Latino cases, 5,352 Latino controls	12,171 European ancestry cases, 56,862 European ancestry controls	3q27.2	IGF2BP2	rs11927381-C	0.325	3E-14		1.14	[1.10-1.17]	NR [at least 8497425] (imputed)	N
2000	chr3	185510005	185510006	rs7619401	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q27.2	NR	rs7619401-?	NR	6E-13				Affymetrix [~ 8270000] (imputed)	N
2000	chr3	185510612	185510613	rs7633675	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3q27.2		rs7633675-?	NR	3E-27				NR [~ 8900000] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Peak insulin response	2,337 Hispanic individuals, 2,159 European ancestry individuals, 332 Pima Indian ancestry individuals	739 European ancestry individuals	3q27.2	IGF2BP2	rs4402960-T		5E-6		0.101	[0.058-0.144] pmol/l decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Type 2 diabetes	4,040 British ancestry cases, 113,735 British ancestry controls	NA	3q27.2	IGF2BP2	rs4402960-T	NR	2E-9	(additive model)	1.155	[1.11-1.2]	NR [9288881] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3q27.2	IGF2BP2	rs4402960-T	0.31	1E-17		1.13	[1.09-1.17]	Affymetrix, Illumina [2500000] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q27.2	IGF2BP2	rs4402960-T	0.32538541911922	2E-23		1.13	[1.10-1.16]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	22693455	Perry JR	2012-05-31	PLoS Genet	Stratifying type 2 diabetes cases by BMI identifies genetic risk variants in LAMA1 and enrichment for risk variants in lean compared to obese cases.	Type 2 diabetes	2,112 lean type 2 diabetes cases, 4,123 obese type 2 diabetes cases, 54,412 controls	2,881 lean type 2 diabetes cases, 8,702 obese type 2 diabetes cases, 18,957 controls	3q27.2	IG2BP2	rs4402960-T	0.31	3E-9	(Obese)	1.15	[1.10-1.21]	NR [NR]	N
2000	chr3	185511686	185511687	rs4402960	19401414	Takeuchi F	2009-04-29	Diabetes	Confirmation of multiple risk Loci and genetic impacts by a genome-wide association study of type 2 diabetes in the Japanese population.	Type 2 diabetes	519 Japanese ancestry cases, 503 Japanese ancestry controls	5,110 Japanese ancestry cases, 6,867 Japanese ancestry controls	3q27.2	IGF2BP2	rs4402960-T	0.31	1E-6		1.14	[1.08-1.21]	Illumina [482625]	N
2000	chr3	185511686	185511687	rs4402960	18372903	Zeggini E	2008-03-30	Nat Genet	Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.	Type 2 diabetes	4,549 European ancestry cases, 5,579 European ancestry controls	24,194 European ancestry cases, 55,598 European ancestry controls	3q27.2	IGF2BP2	rs4402960-T	NR	8E-8		1.17	[1.10-1.25]	Affymetrix, Illumina [2202892] (imputed)	N
2000	chr3	185511686	185511687	rs4402960	17463249	Zeggini E	2007-04-26	Science	Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.	Type 2 diabetes	1,924 European ancestry cases, 2,938 European ancestry controls	3,757 European ancestry cases, 5,346 European ancestry controls	3q27.2	IGF2BP2	rs4402960-T	0.32	9E-16	(DGI+FUSION+WTCCC)	1.14	[1.11-1.18]	Affymetrix [393453]	N
2000	chr3	185511686	185511687	rs4402960	17463248	Scott LJ	2007-04-26	Science	A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.	Type 2 diabetes	1,161 European ancestry cases, 1,174 European ancestry controls	1,215 European ancestry cases, 1,258 European ancestry controls	3q27.2	IGF2BP2	rs4402960-T	0.30	9E-16	(DGI+FUSION+WTCCC)	1.14	[1.11-1.18]	Illumina [315635]	N
2000	chr3	185511686	185511687	rs4402960	17463246	Saxena R	2007-04-26	Science	Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.	Type 2 diabetes	1,464 European ancestry cases, 1,467 European ancestry controls	5,065 European ancestry cases, 5,785 European ancestry controls, at least 18,129 cases and controls.	3q27.2	IGF2BP2	rs4402960-T	0.29	9E-16		1.14	[1.11-1.18]	Affymetrix [386731]	N
2000	chr3	185513295	185513296	rs7640539	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q27.2	IGF2BP2	rs7640539-A	NR	2E-9	(female)	1.11	[1.07-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2000	chr3	185513295	185513296	rs7640539	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	3q27.2	IGF2BP2	rs7640539-A	NR	2E-17	(men)	1.14	[1.11-1.18]	Affymetrix, Illumina [up to 2500000] (imputed)	N
2000	chr3	185513391	185513392	rs7651090	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	67,506 European ancestry men	NA	3q27.2	IGF2BP2	rs7651090-A	0.68357	7E-6		0.015764	[0.0089-0.0226] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
2000	chr3	185513391	185513392	rs7651090	33402679	Lagou V	2021-01-05	Nat Commun	Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability.	Fasting glucose	151,188 European ancestry individuals	NA	3q27.2	IGF2BP2	rs7651090-A	0.68357	3E-7		0.011861	[0.0073-0.0164] unit decrease	Affymetrix, Illumina [8700000] (imputed)	N
2000	chr3	185513391	185513392	rs7651090	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q27.2	IGF2BP2	rs7651090-G	0.313376825056666	4E-57		0.1204	[0.11-0.14] unit increase	NR [5035015] (imputed)	N
2000	chr3	185513391	185513392	rs7651090	28490609	Wood AR	2017-05-10	Diabetes	A Genome-Wide Association Study of IVGTT-Based Measures of First-Phase Insulin Secretion Refines the Underlying Physiology of Type 2 Diabetes Variants.	Acute insulin response	2,346 Hispanic individuals, 2,087 European ancestry individuals, 332 Pima Indian ancestry individuals	741 European ancestry individuals	3q27.2	IGF2BP2	rs7651090-G		8E-6	(Adjusted for BMI)	0.099	[0.056-0.142] unit decrease	Affymetrix, Illumina [~ 39000000] (imputed)	N
2000	chr3	185514087	185514088	rs13100823	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	3q27.2	IGF2BP2	rs13100823-T	0.298222556526841	8E-23		0.0489	[0.039-0.059] SD decrease	Illumina [22400000] (imputed)	N
2000	chr3	185514087	185514088	rs13100823	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	3q27.2	IGF2BP2	rs13100823-T	0.31	4E-12		0.042	[0.03-0.054] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
2000	chr3	185514420	185514421	rs150111048	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.2	IGF2BP2	rs150111048-G	0.2388	3E-7		1.12	[1.07-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2000	chr3	185515634	185515635	rs7637773	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	3q27.2	NR	rs7637773-A	0.3178	3E-8		0.0105	[0.0068-0.0142] unit increase	NR [~ 27400000] (imputed)	N
2000	chr3	185516519	185516520	rs4686696	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q27.2	NR	rs4686696-A	0.3139	6E-17		0.0152	[0.012-0.019] unit increase	NR [~ 27400000] (imputed)	N
2000	chr3	185518920	185518921	rs76922886	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Hemoglobin A1c levels	42,790 Japanese ancestry individuals	NA	3q27.2	IGF2BP2	rs76922886-?	NR	2E-14		0.05676	[0.042-0.071] unit increase novel	Illumina [6108953] (imputed)	N
2000	chr3	185519106	185519107	rs71320321	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	up to 12,931 European ancestry cases, up to 57,196 European ancestry controls	NA	3q27.2	IGF2BP2	rs71320321-A	NR	5E-16		1.1456819		Affymetrix, Illumina [~ 13000000] (imputed)	N
2000	chr3	185520085	185520085	rs144346724	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Two-hour glucose	63,396 European ancestry individuals	NA	3q27.2	IGF2BP2	rs144346724-G	0.7243	1E-11		0.0608	[0.044-0.078] unit decrease	Affymetrix, Illumina [30098705] (imputed)	N
2000	chr3	185520947	185520948	rs9854769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	3q27.2		rs9854769-G	NR	1E-8		0.0348	[0.023-0.047] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2000	chr3	185520947	185520948	rs9854769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	3q27.2		rs9854769-G	NR	8E-11		0.0333	[0.023-0.043] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2000	chr3	185520947	185520948	rs9854769	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q27.2	NR	rs9854769-G	0.319	1E-107		0.1075	[0.098-0.117] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2000	chr3	185520947	185520948	rs9854769	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	3q27.2	IGF2BP2	rs9854769-G	0.31516	2E-19		0.112895556	[0.088-0.137] unit increase	Affymetrix [7288503] (imputed)	N
2000	chr3	185520995	185520996	rs34782298	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q27.2		rs34782298-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2000	chr3	185522224	185522224	rs558655224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs558655224-CA	NR	8E-12		0.0208381	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
2000	chr3	185522224	185522224	rs558655224	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs558655224-CA	NR	4E-12		0.0210952	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
2000	chr3	185522224	185522224	rs558655224	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q27.2		rs558655224-?	NR	4E-12		0.0157385	[0.011-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
2000	chr3	185524080	185524081	rs4686392	33385400	Patrick MT	2020-12-29	J Invest Dermatol	Causal relationship and shared genetic loci between psoriasis and type 2 diabetes through trans-disease meta-analysis.	Psoriasis or type 2 diabetes (trans-disease meta-analysis)	11,024 European ancestry psoriasis cases, 74,124 European ancestry diabetes cases, 840,342 European ancestry controls	NA		NR	rs4686392-G	NR	1E-11		1.08	NR	NR [8016731] (imputed)	N
2000	chr3	185524080	185524081	rs4686392	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA			rs4686392-G	0.331192627	2E-47		1.1344565	[1.115245375-1.153998496]	Illumina [8919992] (imputed)	N
2000	chr3	185524080	185524081	rs4686392	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls		IGF2BP2	rs4686392-G	0.337	1E-18	(Japanese)	0.032	[0.024-0.04] unit decrease	Illumina [6108953] (imputed)	N
2000	chr3	185526061	185526062	rs7630554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q27.2		rs7630554-G	NR	2E-54		0.1239	[0.11-0.14] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2000	chr3	185526108	185526109	rs35188816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	71,221 East Asian ancestry individuals	NA	3q27.2		rs35188816-C	0.340486	1E-12		0.0315533	[0.023-0.04] unit increase	Illumina [13466143] (imputed)	N
2000	chr3	185526108	185526109	rs35188816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q27.2		rs35188816-C	NR	7E-12		0.0148	[0.01-0.019] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
2000	chr3	185526108	185526109	rs35188816	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3q27.2	IGF2BP2	rs35188816-C	0.2923	3E-6		0.0072	[0.0043-0.0101] unit increase	Affymetrix, Illumina [33811881] (imputed)	N
2000	chr3	185526108	185526109	rs35188816	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q27.2	IGF2BP2	rs35188816-C	0.2915	9E-11		0.0123	[0.0086-0.016] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q27.2		rs1470579-C	0.330339481	4E-47		0.1393784	[0.12-0.16] unit increase	Illumina [13429769] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.4571	4E-14	(South Asian)	0.1264	[0.094-0.159] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.3042	8E-12	(EA)	0.1031	[0.074-0.133] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.3042	1E-45		0.13	[0.11-0.15] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	3q27.2	IGFBP2	rs1470579-C	NR	2E-24	(Japanese)	1.176043	[1.13996358956295-1.21326535811954]	Illumina [7521072] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.34	5E-14		1.19	[1.14-1.24]	Illumina [6209637] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.5	2E-19	(South Asian, East Asian, Europeans)	1.08	[1.05-1.09]	Illumina [1232008] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.45	4E-9	(South Asians)	1.06	[1.04-1.09]	Illumina [1232008] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.45	2E-13	(South Asians, East Asians)	1.06	[1.04-1.08]	Illumina [1232008] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.41	5E-6	(Punjabi Sikhs)	1.19	[1.11-1.28]	Illumina [1232008] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	23300278	Saxena R	2013-01-08	Diabetes	Genome-wide association study identifies a novel locus contributing to type 2 diabetes susceptibility in Sikhs of Punjabi origin from India.	Type 2 diabetes	842 Punjabi Sikh ancestry cases, 774 Punjabi Sikh ancestry controls	up to 2,512 Punjabi Sikh ancestry cases and 3,201 Punjabi Sikh ancestry controls, up to 16,128 South Asian ancestry cases and 23,846 South Asian ancestry controls, up to 16,746 East Asian ancestry cases and 16,961 East Asian ancestry controls, up to 8,130 European ancestry cases and 38,987 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.41	4E-7	(All Punjabi)	1.14	[1.09-1.20]	Illumina [1232008] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	22581228	Manning AK	2012-05-13	Nat Genet	A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.	Fasting blood glucose (BMI interaction)	Up to 58,074 European ancestry individuals	Up tp 38,422 European ancestry individuals	3q27.2	IGF2BP2	rs1470579-A	0.6892	6E-7		0.0021	[0.00071-0.00349] unit decrease	Affymetrix, Illumina [~ 2400000] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	22233651	Kwak SH	2012-01-10	Diabetes	A genome-wide association study of gestational diabetes mellitus in Korean women.	Diabetes (gestational)	468 Korean ancestry cases, 1,242 Korean ancestry controls	931 Korean ancestry cases, 783 Korean ancestry controls	3q27.2	IGF2BP2	rs1470579-C	0.293	2E-7		1.332	[1.197-1.484]	Affymetrix [2188613] (imputed)	N
2000	chr3	185529079	185529080	rs1470579	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	3q27.2	IGF2BP2	rs1470579-C		2E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [2426886] (imputed)	N
2000	chr3	185529628	185529629	rs9852647	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q27.2	NR	rs9852647-G	0.248832	3E-14		0.016119	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2000	chr3	185529653	185529667	rs71164546	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q27.2	IGF2BP2	rs71164546-T	0.274287	2E-11		0.0176499	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185530289	185530290	rs6769511	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q27.2	IGF2BP2	rs6769511-T	0.687	5E-14		0.0149742	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
2000	chr3	185530289	185530290	rs6769511	18711366	Unoki H	2008-08-17	Nat Genet	SNPs in KCNQ1 are associated with susceptibility to type 2 diabetes in East Asian and European populations.	Type 2 diabetes	194 Japanese ancestry cases, 1,558 Japanese ancestry controls	5,324 East Asian ancestry cases, 7,037 East Asian ancestry controls, 4,085 European ancestry cases, 5,302 European ancestry controls	3q27.2	IGF2BP2	rs6769511-C	0.32	1E-9		1.23	[1.15-1.31]	Affymetrix [207097]	N
2000	chr3	185530321	185530322	rs9837654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q27.2	IGF2BP2	rs9837654-A	0.257073	3E-25		0.02646287	[0.021-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185530321	185530322	rs9837654	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q27.2	IGF2BP2	rs9837654-A	0.257078	5E-10		0.01599479	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185531660	185531661	rs1374910	21573907	Parra EJ	2011-05-15	Diabetologia	Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas.	Type 2 diabetes	1,804 Hispanic cases, 780 Hispanic controls	European ancestry individuals	3q27.2	IGF2BP2	rs1374910-T	NR	1E-7		1.24	[1.15-1.34]	Affymetrix [315658]	N
2000	chr3	185534481	185534482	rs9859406	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	24,646 African American cases, 31,446 African American controls	NA	3q27.2	NR	rs9859406-G	0.257	6E-14		0.115	[0.086-0.144] unit decrease	Affymetrix, Illumina [945603] (imputed)	N
2000	chr3	185534481	185534482	rs9859406	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q27.2	NR	rs9859406-G	0.6476	2E-169		0.1117	[0.1-0.12] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2000	chr3	185536222	185536223	rs6444082	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q27.2		rs6444082-T	0.33469	1E-9		0.0174972	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
2000	chr3	185537636	185537637	rs937589119	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Childhood onset type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 1,434 European ancestry adult controls, 1,068 African American adult controls, 3,559 Hispanic adult controls	NA	3q27.2	IGF2BP2	rs937589119-GT		3E-9		1.34	[NR]	Illumina [10000000] (imputed)	N
2000	chr3	185537636	185537636	rs113851927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q27.2		rs113851927-GT	0.336448223	5E-37		0.1323426	[0.11-0.15] unit increase	Illumina [13134967] (imputed)	N
2000	chr3	185537636	185537636	rs113851927	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q27.2		rs113851927-GT	NR	8E-29		0.0243	[0.02-0.029] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2000	chr3	185537636	185537636	rs113851927	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs113851927-GT	NR	3E-12		0.0215062	[0.015-0.028] unit increase	Affymetrix [321114] (imputed)	N
2000	chr3	185541212	185541213	rs11717959	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q27.2		rs11717959-T	NR	1E-16		0.0175	[0.013-0.022] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2000	chr3	185541212	185541213	rs11717959	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.2	IGF2BP2	rs11717959-G	0.6208	3E-6		1.04	[1.02-1.06]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2000	chr3	185543965	185543966	rs142611765	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q27.2	IGF2BP2	rs142611765-A	0.0457	4E-6		0.0805	[0.046-0.115] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2000	chr3	185544308	185544309	rs11705701	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q27.2		rs11705701-A	NR	2E-11		0.0142	[0.01-0.018] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2000	chr3	185544308	185544309	rs11705701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs11705701-A	NR	3E-12		0.0200505	[0.014-0.026] unit increase	Affymetrix [321114] (imputed)	N
2000	chr3	185544308	185544309	rs11705701	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs11705701-A	NR	2E-13		0.0209683	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
2000	chr3	185545501	185545502	rs145669774	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q27.2	Intergenic	rs145669774-A	0.996	2E-6	(AA)	0.689	NR unit increase	Illumina [NR] (imputed)	N
2000	chr3	185545689	185545690	rs6444083	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	3q27.2	IGF2BP2	rs6444083-C	0.6229	5E-8		0.038	[0.024-0.052] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2000	chr3	185545718	185545719	rs138306797	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	3q27.2	IGF2BP2	rs138306797-?	NR	3E-6		0.78	[0.47-1.09] unit increase	Illumina [1075436] (imputed)	N
2000	chr3	185546149	185546150	rs77265382	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q27.2	IGF2BP2	rs77265382-T	0.045297	6E-12		0.037207525	[0.027-0.048] unit decrease	Affymetrix [93095623] (imputed)	N
2000	chr3	185546149	185546150	rs77265382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.2	NR	rs77265382-T	0.0433668	8E-11				Affymetrix, Illumina [23472807] (imputed)	N
2000	chr3	185546149	185546150	rs77265382	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q27.2	NR	rs77265382-T	0.045014	1E-12		0.033169	[0.024-0.042] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2000	chr3	185547916	185547917	rs764129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q27.2		rs764129-T	0.344116	2E-8		0.0119735	[0.0078-0.0161] unit increase	Illumina [13479295] (imputed)	N
2000	chr3	185547916	185547917	rs764129	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	163,835 East Asian ancestry individuals	NA	3q27.2		rs764129-T	0.344144	7E-18		0.0290759	[0.022-0.036] unit decrease	Illumina [13479178] (imputed)	N
2000	chr3	185547916	185547917	rs764129	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q27.2	IGF2BP2, TRA2B	rs764129-?	NR	7E-11		0.019678637	[0.014-0.026] unit increase	Illumina [27896057] (imputed)	N
2000	chr3	185547916	185547917	rs764129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q27.2		rs764129-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	3q27.2	IGF2BP2	rs2194411-?	NR	4E-9		0.0601	NR L increase	Affymetrix [9390170] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs2194411-A	NR	6E-26		0.0448369	[0.037-0.053] unit increase	Affymetrix [321016] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q27.2	IGF2BP2	rs2194411-A	NR	2E-24		0.0473335	[0.038-0.056] unit increase	Affymetrix [323123] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q27.2	intergenic	rs2194411-A	0.1283	2E-54		0.0443	[0.039-0.05] unit increase	Affymetrix [18391927] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q27.2	IGF2BP2	rs2194411-G	0.871692	1E-8		0.0171285	[0.011-0.023] unit increase	Affymetrix [NR] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q27.2	NR	rs2194411-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.2		rs2194411-?	NR	1E-132				NR [~ 8900000] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q27.2	NR	rs2194411-?	NR	4E-18		0.2885	[0.22-0.35] unit increase	Affymetrix [7794483] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q27.2	NR	rs2194411-?	NR	3E-6	(female)	0.16966	[0.098-0.241] unit increase	Affymetrix [7794483] (imputed)	N
2000	chr3	185548662	185548663	rs2194411	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	3q27.2	NR	rs2194411-?	NR	1E-13	(male)	0.38968	[0.29-0.49] unit increase	Affymetrix [7794483] (imputed)	N
2000	chr3	185548682	185548683	rs720390	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	3q27.2	IGF2BP2	rs720390-A	NR	3E-9		0.0187611	[0.013-0.025] unit increase	Affymetrix [323123] (imputed)	N
2000	chr3	185548682	185548683	rs720390	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q27.2	NR	rs720390-?	NR	9E-11				Affymetrix [~ 8270000] (imputed)	N
2000	chr3	185548682	185548683	rs720390	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	3q27.2	IGF2BP2	rs720390-A	0.383	1E-29		0.035	[0.029-0.041] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
2000	chr3	185548682	185548683	rs720390	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	3q27.2	IGF2BP2	rs720390-A	0.39	2E-14		0.029	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
2000	chr3	185559522	185559523	rs9869807	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs9869807-A	NR	7E-9		0.0164506	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
2000	chr3	185563273	185563274	rs2098771	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q27.2	IGF2BP2	rs2098771-A	0.5953	4E-8	(EA)	0.0224	[0.014-0.03] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2000	chr3	185564275	185564276	rs149315186	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q27.2	IGF2BP2	rs149315186-G	NR	5E-8		0.034753	[0.022-0.047] unit increase	Affymetrix [319769] (imputed)	N
2000	chr3	185564275	185564276	rs149315186	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q27.2	NR	rs149315186-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2000	chr3	185566638	185566639	rs113974081	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	3q27.2	Intergenic	rs113974081-T	0.409	2E-7		0.6771	[0.42-0.93] unit increase	Illumina [9520174] (imputed)	N
2000	chr3	185588940	185588941	rs147922770	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q27.2	Intergenic	rs147922770-G	0.994	1E-6	(AA)	0.712	NR unit increase	Illumina [NR] (imputed)	N
2001	chr3	185604947	185604948	rs111649035	31296530	Trendowski MR	2019-07-11	Clin Cancer Res	Clinical and Genome-Wide Analysis of Serum Platinum Levels after Cisplatin-Based Chemotherapy.	Serum platinum levels after completion of cisplatin chemotherapy	866 European ancestry individuals, 17 non-European ancestry individuals, 127 individuals	NR	3q27.2	NR	rs111649035-C	0.0114	6E-6		0.6144	[0.35-0.88] unit increase	Illumina [7305641] (imputed)	N
2001	chr3	185621828	185621829	rs6444087	19247474	Caporaso N	2009-02-27	PLoS One	Genome-wide and candidate gene association study of cigarette smoking behaviors.	Smoking behavior	2,617 European ancestry smokers, 1,725 European ancestry controls	NA	3q27.2	intergenic	rs6444087-?	0.26	9E-6	(EVNV)	1.28	[NR]	Illumina [~ 518000]	N
2001	chr3	185629567	185629568	rs2002675	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Menarche (age at onset)	76,831 European ancestry individuals	NA	3q27.2	TRA2B, ETV5	rs2002675-?	NR	6E-7				Illumina [12039492]	N
2001	chr3	185629567	185629568	rs2002675	21102462	Elks CE	2010-11-21	Nat Genet	Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.	Menarche (age at onset)	86,142 European ancestry female individuals, 557 Old Order Amish (founder/genetic isolate) female individuals, 1,103 Erasmus Rucphen (founder/genetic isolate) female individuals	Up to 12,813 European ancestry female individuals, 910 Val Borbera (founder/genetic isolate) female individuals, 348 Orcadian (founder/genetic isolate) female individuals, 338 Friuli Venezia Giulia (founder/genetic isolate) female individuals, 322 Carlantino (founder/genetic/isolate) female individuals	3q27.2	TRA2B, ETV5	rs2002675-G	0.42	1E-9		2.2	[1.42-2.98] week increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2001	chr3	185635684	185635685	rs16860328	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	3q27.2	TRA2B, IGF2BP2	rs16860328-G	0.42	1E-16		0.04	[0.03-0.05] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
2001	chr3	185643981	185643981	rs533067338	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q27.2	TRA2B	rs533067338-T	0.5783	1E-13		0.0139	[0.01-0.018] unit decrease	Affymetrix [18391927] (imputed)	N
2001	chr3	185652946	185652947	rs16860342	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q27.2		rs16860342-?	NR	9E-17				NR [~ 8900000] (imputed)	N
2001	chr3	185653096	185653097	rs114946066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q27.2	TRA2B	rs114946066-C	0.993	6E-7	(AA)	0.139	unit increase	Illumina [NR] (imputed)	N
2001	chr3	185653096	185653097	rs114946066	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q27.2	TRA2B	rs114946066-C	0.993	1E-6	(AA)	0.683	NR unit increase	Illumina [NR] (imputed)	N
2001	chr3	185686525	185686526	rs12635129	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.2		rs12635129-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2001	chr3	185686740	185686741	rs10049246	18846501	Sonuga-Barke EJ	2008-10-07	Am J Med Genet B Neuropsychiatr Genet	Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan.	Attention deficit hyperactivity disorder symptoms (maternal expressed emotions interaction)	909 European ancestry trios	NA	3q27.2	intergenic	rs10049246-G	0.59	8E-6	(maternal warmth)	0.6	[NR] unit increase	Perlegen [429981]	N
2001	chr3	185709499	185709500	rs9874264	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	3q27.2	Intergenic	rs9874264-C	0.893	5E-6	(AA)	0.052	NR unit increase	Illumina [NR] (imputed)	N
2002	chr3	185729752	185729753	rs9867130	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q27.2	RN7SL637P	rs9867130-A	0.1366	2E-7		0.0502	[0.031-0.069] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2002	chr3	185730048	185730049	rs7646786	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	3q27.2	LOC344887	rs7646786-T	NR	2E-8	(Bacilli class)	0.22	unit decrease	Affymetrix, Illumina [6344846] (imputed)	N
2002	chr3	185740083	185740084	rs186204991	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	3q27.2	ETV5	rs186204991-A	0.0019	5E-7		0.8019	[0.49-1.12] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2002	chr3	185783610	185783611	rs201874364	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	3q27.2	ETV5	rs201874364-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
2002	chr3	185783610	185783611	rs201874364	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	3q27.2	ETV5	rs201874364-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
2002	chr3	185783610	185783611	rs201874364	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	3q27.2	ETV5	rs201874364-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
2002	chr3	185783610	185783611	rs201874364	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	3q27.2	ETV5	rs201874364-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
2002	chr3	185787333	185787334	rs7631721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q27.2		rs7631721-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	3q27.2		rs4077189-A	NR	1E-8		0.0203	[0.013-0.027] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (alanine transaminase)	437,267 European ancestry individuals	315,572 European ancestry individuals	3q27.2	ETV5	rs4077189-G	0.90714	7E-10		0.00421563	[0.0029-0.0055] unit increase	Affymetrix [13995440] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	3q27.2	NR	rs4077189-A	NR	5E-12		0.0296	[0.021-0.038] unit decrease	Affymetrix [9000000] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q27.2	NR	rs4077189-A	NR	5E-12		0.0282	[0.02-0.036] unit decrease	Affymetrix [9000000] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q27.2	NR	rs4077189-A	NR	4E-12		0.0284	[0.02-0.036] unit increase	Affymetrix [9000000] (imputed)	N
2002	chr3	185796784	185796785	rs4077189	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	3q27.2	NR	rs4077189-A	NR	4E-10		0.0256	[0.018-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
2002	chr3	185798024	185798025	rs77805826	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	3q27.2	ETV5	rs77805826-T	0.138	8E-9		0.433	[0.29-0.58] unit decrease	Affymetrix [NR] (imputed)	N
2002	chr3	185798024	185798025	rs77805826	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q27.2	ETV5	rs77805826-T	0.13	8E-16		0.0041	[0.0031-0.0051] unit decrease	Affymetrix [NR] (imputed)	N
2002	chr3	185798295	185798296	rs56940353	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q27.2	Intergenic	rs56940353-T	0.8089	2E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2002	chr3	185802822	185802823	rs10937240	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	3q27.2	NR	rs10937240-C	0.192843	3E-9		0.052680314	[0.035-0.07] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
2002	chr3	185802822	185802823	rs10937240	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q27.2		rs10937240-T	0.1899	7E-12		0.0123	[0.0088-0.0158] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2002	chr3	185803531	185803532	rs112545201	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q27.2	ETV5	rs112545201-T	0.1335	9E-26		0.0042	[0.0032-0.0052] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2002	chr3	185803531	185803532	rs112545201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q27.2	NR	rs112545201-C	NR	6E-7		0.031	unit increase	Affymetrix [at least 7091467] (imputed)	N
2002	chr3	185803531	185803532	rs112545201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	Total cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q27.2	NR	rs112545201-C	0.867	2E-7	(EA)	0.035	unit increase	Affymetrix [at least 7091467] (imputed)	N
2002	chr3	185803531	185803532	rs112545201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q27.2	NR	rs112545201-C	NR	3E-19		0.046	unit increase	Affymetrix [at least 7091467] (imputed)	N
2002	chr3	185803531	185803532	rs112545201	29507422	Hoffmann TJ	2018-03-05	Nat Genet	A large electronic-health-record-based genome-wide study of serum lipids.	High density lipoprotein cholesterol levels	76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals	NA	3q27.2	NR	rs112545201-C	0.867	1E-14	(EA)	0.043	unit increase	Affymetrix [at least 7091467] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	1E-8		0.0301032	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	2E-8		0.0299165	[0.02-0.04] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863323	2E-9		0.0319729	[0.022-0.042] unit decrease	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	3E-8		0.0297721	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	5E-9		0.0309233	[0.021-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	3E-8		0.0300618	[0.019-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	9E-9		0.0303879	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	1E-8		0.0308639	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	9E-9		0.0306331	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	5E-8		0.0297891	[0.019-0.04] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	3q27.2		rs57912727-A	0.863315	7E-9		0.0308202	[0.02-0.041] unit increase	NR [11722792] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	3q27.2		rs57912727-C	NR	4E-21		0.0315	[0.025-0.038] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
2002	chr3	185804582	185804583	rs57912727	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q27.2	ETV5	rs57912727-C	0.135986	2E-11		0.02202865	[0.016-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q27.2	ETV5	rs80080062-G	NR	6E-12	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	3q27.2	ETV5	rs80080062-G	NR	1E-12				Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q27.2	ETV5	rs80080062-G	NR	2E-10	(EA)			Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	3q27.2	ETV5	rs80080062-G	NR	1E-11				Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q27.2	ETV5	rs80080062-G	NR	9E-6	(EA)	0.007	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	3q27.2	ETV5	rs80080062-G	NR	7E-6		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
2002	chr3	185812168	185812169	rs80080062	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q27.2		rs80080062-C	0.867	6E-9	(conditional-joint)	0.012	[0.0079-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q27.2	ETV5, KNG1	rs6809651-A	0.079	3E-8		0.299	[-0.0048-0.6028] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28452372	Gorski M	2017-04-28	Sci Rep	1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.	Glomerular filtration rate (creatinine)	110,517 European ancestry individuals		3q27.2	ETV5	rs6809651-A	NR	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [up to 10971307] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8693	3E-6	(EA)	0.0552	[0.032-0.078] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8709	9E-13	(EA)	0.0447	[0.033-0.057] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8694999999999999	1E-10	(EA,women)	0.0507	[0.035-0.066] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8652	1E-12		0.042	[0.03-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically active individuals	1,957 African American women, 1,773 Filipino ancestry women, 305 Indian ancestry women, 67,609 European ancestry women, 1,206 African American men, 2,029 Indian ancestry men, 43,399 European ancestry men, at least 4,819 European ancestry individuals	4,807 African American women, 12,347 European ancestry women, 265 African American men, 14,540 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8627	3E-11	(women)	0.0482	[0.034-0.062] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-?	NR	9E-6	(men)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-?	NR	9E-17	(EA)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-?	NR	1E-16				Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8709	6E-14	(EA, women)	0.0538	[0.04-0.068] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8709	3E-17	(EA)	0.0478	[0.037-0.059] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8709	2E-6	(EA, men)	0.0396	[0.023-0.056] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185814641	185814642	rs6809651	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs6809651-G	0.8652	1E-6	(men)	0.0375	[0.022-0.053] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185818881	185818882	rs4234589	33619380	Huang LO	2021-02-22	Nat Metab	Genome-wide discovery of genetic loci that uncouple excess adiposity from its comorbidities.	Body mass index and HDL-C (pairwise)	509,429 European ancestry individuals, 16,962 East Asian, South Asian, Hispanic and African American ancestry individuals	NA	3q27.2	ETV5	rs4234589-A	0.8618	4E-33				Affymetrix, Illumina [2331072] (imputed)	N
2002	chr3	185818881	185818882	rs4234589	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	ETV5	rs4234589-?	NR	3E-13	(EA, women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185822352	185822353	rs10513801	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q27.2	ETV5	rs10513801-T	0.862853	8E-28		0.030283	[0.025-0.036] unit increase	Affymetrix [NR] (imputed)	N
2002	chr3	185822352	185822353	rs10513801	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	3q27.2	NA	rs10513801-T	0.8762	6E-49		0.0352	[0.03-0.04] unit increase	NR [~ 27400000] (imputed)	N
2002	chr3	185822352	185822353	rs10513801	26831199	Pattaro C	2016-01-21	Nat Commun	Genetic associations at 53 loci highlight cell types and biological pathways relevant for kidney function.	Glomerular filtration rate in non diabetics (creatinine)	118,448 European ancestry individuals	36,433 European ancestry individuals	3q27.2	ETV5	rs10513801-T	0.87	1E-9		0.0072	[NR] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2002	chr3	185822773	185822774	rs10937241	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	3q27.2	ETV5	rs10937241-A	0.160567	1E-8		0.0109074	[0.0072-0.0147] unit decrease	Affymetrix [12370749]	N
2002	chr3	185822773	185822774	rs10937241	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	3q27.2		rs10937241-A	0.17	2E-11	(EA, trans-ethnic)			Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2002	chr3	185822773	185822774	rs10937241	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	3q27.2		rs10937241-A	0.17	4E-12	(EA, trans-ethnic)	0.0021	[-0.003-0.0072] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2002	chr3	185822773	185822774	rs10937241	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	3q27.2		rs10937241-?	NR	3E-7	(EA, trans-ethnic)	0.009047	[0.001-0.0171] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2002	chr3	185822773	185822774	rs10937241	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels in non smokers	18,641 African ancestry individuals, 10,777 Asian ancestry individuals, 75,138 European ancestry individuals, 5,873 Hispanic individuals	NA	3q27.2		rs10937241-?	NR	2E-7	(EA, trans-ethnic)	0.0094	[0.0059-0.0129] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2002	chr3	185822773	185822774	rs10937241	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	3q27.2		rs10937241-?	NR	8E-7	(EA, trans-ethnic)	0.0083	[0.005-0.0116] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	31754094	Pisanu C	2019-11-21	Transl Psychiatry	Evidence that genes involved in hedgehog signaling are associated with both bipolar disorder and high BMI.	Bipolar disorder or body mass index	20,352 European ancestry bipolar disorder cases, 31,358 European ancestry controls, 322,154 European ancestry individuals with BMI data.	NA	3q27.2	ETV5	rs1516725-T	NR	1E-24		0.046	[0.038-0.054] unit decrease	Illumina [2013566] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	3q27.2	NR	rs1516725-?	NR	5E-7		0.04773624	[0.029-0.066] unit increase	Illumina [32062178] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28892062	Akiyama M	2017-09-11	Nat Genet	Genome-wide association study identifies 112 new loci for body mass index in the Japanese population.	Body mass index	up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men	up to 10,048 Japanese ancestry women, up to 5,098 Japanese ancestry men, up to 181,999 European ancestry women, up to 140,155 European ancestry controls	3q27.2	ETV5	rs1516725-C	0.86	1E-24		0.045	[0.037-0.053] unit increase	Illumina [6108953] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	8E-12	(women)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	6E-6	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Body mass index (joint analysis main effects and smoking interaction)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	3E-16				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in smokers	19,883 European ancestry women, up to 16,928 European ancestry men, up to 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	7E-9		0.058	[0.038-0.078] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	7E-10		0.0325	[0.022-0.043] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI in non-smokers	77,279 European ancestry women, 47,280 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	1E-8	(women)	0.0382	[0.025-0.051] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	6E-15		0.0367	[0.027-0.046] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	BMI (adjusted for smoking behaviour)	98,173 European ancestry women, 64,373 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	3q27.2	ETV5	rs1516725-T	0.1363	2E-11	(women)	0.0408	[0.029-0.053] kg/m2 decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	26961502	Wood AR	2016-03-10	Diabetologia	Variants in the FTO and CDKAL1 loci have recessive effects on risk of obesity and type 2 diabetes, respectively.	Body mass index	29,925 British ancestry cases, 89,763 British ancestry controls	NA	3q27.2	ETV5	rs1516725-C	NR	6E-8	(additive model)	0.032	[0.02-0.044] unit increase	NR [9288881] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	26426971	Winkler TW	2015-10-01	PLoS Genet	The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.	Body mass index	up to 309,889 European ancestry individuals	NA	3q27.2	NR	rs1516725-T	0.128803182679479	2E-31		0.04735101	unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.2	ETV5	rs1516725-C	0.873	1E-12	(EA, men)	0.044	[0.032-0.056] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2002	chr3	185824003	185824004	rs1516725	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.2	ETV5	rs1516725-C	0.872	2E-22	(EA)	0.045	[0.036-0.054] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2002	chr3	185824003	185824004	rs1516725	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.2	ETV5	rs1516725-C	0.87	2E-15	(EA, women)	0.047	[0.035-0.058] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2002	chr3	185824003	185824004	rs1516725	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q27.2	ETV5	rs1516725-C	0.869	1E-24		0.045	[0.036-0.053] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2002	chr3	185824003	185824004	rs1516725	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q27.2	ETV5	rs1516725-T	0.1265	8E-7	(EA, women)	0.0326	[0.02-0.046] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q27.2	ETV5	rs1516725-T	0.1265	2E-9	(EA)	0.031	[0.021-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q27.2	ETV5	rs1516725-T	0.1241	3E-7	(EA,women)	0.0356	[0.022-0.049] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	3q27.2	ETV5	rs1516725-T	0.1241	1E-8	(EA)	0.0309	[0.02-0.041] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	3q27.2	ETV5	rs1516725-C	0.86	3E-9	(Obesity class II)	1.15	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2002	chr3	185824003	185824004	rs1516725	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Body mass index	7,962 European ancestry high body mass index individuals, 8,106 European ancestry low body mass index individuals	4,900 European ancestry high body mass index individuals, 4,891 European ancestry low body mass index individuals	3q27.2	ETV5	rs1516725-C	0.86	4E-8		1.21	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2002	chr3	185826739	185826740	rs869400	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q27.2		rs869400-G	NR	5E-25		0.0303	[0.025-0.036] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
2002	chr3	185826739	185826740	rs869400	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q27.2	ETV5	rs869400-T	0.185088	4E-25		0.0183105	[0.015-0.022] unit decrease	Affymetrix [12370749]	N
2002	chr3	185828464	185828465	rs73052033	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q27.2	DGKG	rs73052033-T	0.814913	4E-13		0.0183914	[0.013-0.023] unit increase	Affymetrix [NR] (imputed)	N
2002	chr3	185828464	185828465	rs73052033	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q27.2	NR	rs73052033-?	NR	5E-33				Affymetrix [~ 8270000] (imputed)	N
2002	chr3	185828464	185828465	rs73052033	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q27.2		rs73052033-?	NR	3E-34				NR [~ 8900000] (imputed)	N
2002	chr3	185829890	185829891	rs1516728	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.2	IGF2BP2	rs1516728-A	0.759	6E-6		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2002	chr3	185830487	185830488	rs55742087	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	3q27.2	NR	rs55742087-T	0.1835	4E-13		0.023318082	[0.017-0.03] unit decrease	Affymetrix [10549349] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	3q27.2	NR	rs7647305-?	NR	5E-9		0.04362138	[0.029-0.058] unit increase	Illumina [32062178] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q27.2	NA	rs7647305-T	0.2099	8E-12		0.0142	[0.01-0.018] unit decrease	NR [~ 27400000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	3q27.2	NR	rs7647305-T	NR	7E-31		0.036	[NR] unit decrease	Affymetrix [at least 28613428] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	29381148	Gong J	2017-12-21	Int J Obes (Lond)	Trans-ethnic analysis of metabochip data identifies two new loci associated with BMI.	Body mass index	35,606 African American individuals, 26,048 Hispanic/Latino individuals, 22,466 Asian or Native Hawaiian ancestry individuals, 17,859 European ancestry individuals, 535 Native American individuals	NA	3q27.2	ETV5	rs7647305-A		7E-9		0.0058	[0.0038-0.0078] unit decrease	Illumina [at least 200000]	N
2002	chr3	185834289	185834290	rs7647305	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3q27.2	DGKG, ETV5	rs7647305-C	0.7745	2E-6		0.043	[0.025-0.061] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index in physically inactive individuals	561 African American women, 352 Filipino ancestry women, 725 Indian ancestry women, 19,366 European ancestry women, 251 African American men, 4,654 Indian ancestry men, 11,727 European ancestry men, 959 European ancestry individuals	1,437 African American women, 5,184 European ancestry women, 64 African American men, 5,416 European ancestry men	3q27.2	DGKG, ETV5	rs7647305-C	0.7689	7E-6	(women)	0.0521	[0.029-0.075] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index (joint analysis main effects and physical activity interaction)	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	DGKG, ETV5	rs7647305-?	NR	2E-14	(women)			Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	DGKG, ETV5	rs7647305-C	0.7779	6E-15	(women)	0.0428	[0.032-0.054] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	28448500	Graff M	2017-04-27	PLoS Genet	Genome-wide physical activity interactions in adiposity - A meta-analysis of 200,452 adults.	Body mass index	2,518 African American women, 86,278 European ancestry women, 1,773 Filipino ancestry women, 1,030 Indian ancestry women, 1,457 African American men, 55,137 European ancestry men, 7,648 Indian ancestry men, 5,527 European ancestry individuals	6,244 African American women, 17,531 European ancestry women, 329 African American men, 19,956 European ancestry men	3q27.2	DGKG, ETV5	rs7647305-C	0.7779	3E-17		0.0366	[0.028-0.045] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	28430825	Ng MCY	2017-04-21	PLoS Genet	Discovery and fine-mapping of adiposity loci using high density imputation of genome-wide association studies in individuals of African ancestry: African Ancestry Anthropometry Genetics Consortium.	Body mass index (adult)	16,559 African ancestry men, 26,193 African ancestry women	2,458 African ancestry men, 7,685 African ancestry women, 152,893 European ancestry men, 171,977 European ancestry women	3q27.2	ETV5	rs7647305-C	0.595	7E-7	(AA)	0.039	[0.023-0.055] unit increase	Affymetrix, Illumina [17972087] (imputed)	N
2002	chr3	185834289	185834290	rs7647305	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Weight	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	3q27.2	SFRS10, ETV5, DGKG	rs7647305-C	0.77	4E-9		4.0	[2.67-5.33] percentage SD increase	Illumina [305846]	N
2002	chr3	185834289	185834290	rs7647305	19079260	Thorleifsson G	2008-12-14	Nat Genet	Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity.	Body mass index	72,598 European ancestry individuals, 1,160 African American individuals	Up to 11,036 European ancestry individuals, 32,615 individuals	3q27.2	SFRS10, ETV5, DGKG	rs7647305-C	0.77	7E-11		4.42	[3.09-5.75] % SD increase	Illumina [305846]	N
2002	chr3	185834498	185834499	rs9816226	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Body mass index	17,127 African American individuals, 21,955 Hispanic/Latino individuals, 4,647 Asian ancestry individuals, 3,936 Native Hawaiian ancestry individuals, 645 Native American ancestry individuals, 1,025 individuals	NA	3q27.2	NR	rs9816226-?	NR	5E-9		0.05144905	[0.034-0.069] unit increase	Illumina [32062178] (imputed)	N
2002	chr3	185834498	185834499	rs9816226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q27.2	NA	rs9816226-A	0.1755	1E-50		0.0315	[0.027-0.036] unit decrease	NR [~ 27400000] (imputed)	N
2002	chr3	185834498	185834499	rs9816226	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	3q27.2	NA	rs9816226-A	0.1755	1E-50		0.0315	[0.027-0.036] unit decrease	NR [~ 27400000] (imputed)	N
2002	chr3	185834498	185834499	rs9816226	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals, up to 16,935 African ancestry individuals, up to 30,468 South Asian ancestry individuals, up to 8,287 East Asian ancestry individuals, 5,084 Hispanic individuals	up to 286,268 European and unknown ancestry individuals	3q27.2	ETV5	rs9816226-T	NR	1E-22		0.022637924	[0.018-0.027] unit increase	Illumina [242289]	N
2002	chr3	185834498	185834499	rs9816226	29083408	Liu DJ	2017-10-30	Nat Genet	Exome-wide association study of plasma lipids in >300,000 individuals.	High density lipoprotein cholesterol levels	up to 237,050 European ancestry individuals	NA	3q27.2	NR	rs9816226-T	0.83	7E-12		0.027	unit increase	Illumina [242289]	N
2002	chr3	185834498	185834499	rs9816226	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	3q27.2	ETV5	rs9816226-T	0.82	2E-14	(Overweight)	1.07	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2002	chr3	185834498	185834499	rs9816226	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Obesity	93,015 European ancestry overweight individuals, 32,858 European ancestry  class I obese individuals, 9,889 European ancestry class II obese individuals, 2,896 European ancestry class III obese individuals, up to 65,840 European ancestry controls	65,332 European ancestry overweight individuals, 22,373 European ancestry class I obese individuals, 5,476 European ancestry class II obese individuals, 1,162 European ancestry class III obese individuals, up to 39,294 European ancestry controls	3q27.2	ETV5	rs9816226-T	0.82	2E-13	(Obesity class I)	1.1	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
2002	chr3	185834498	185834499	rs9816226	20935630	Speliotes EK	2010-10-10	Nat Genet	Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index.	Body mass index	Up to 123,865 European ancestry individuals	Up to 125,931 European ancestry individuals	3q27.2	ETV5	rs9816226-T	0.82	2E-18		0.14	[0.08-0.20] kg/m2 increase	Affymetrix, Illumina, Perlegen [~ 2800000] (imputed)	N
2002	chr3	185840442	185840443	rs6793368	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q27.2	DGKG	rs6793368-T	0.8218	7E-8		0.0459	[0.029-0.063] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2003	chr3	185878418	185878419	rs4686739	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q27.2	DGKG	rs4686739-A	0.366407	3E-17		0.0167646	[0.013-0.021] unit decrease	Affymetrix [NR] (imputed)	N
2003	chr3	185883561	185883562	rs1400362	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q27.2	DGKG	rs1400362-T	0.258511	3E-8		0.0125421	[0.0081-0.017] unit decrease	Affymetrix [NR] (imputed)	N
2003	chr3	185901432	185901433	rs16860532	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q27.2		rs16860532-A	NR	3E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
2003	chr3	185912815	185912816	rs9867398	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q27.2	DGKG	rs9867398-T	0.094069	4E-9		0.022411963	[0.015-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2003	chr3	185912815	185912816	rs9867398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.2	NR	rs9867398-T	0.122047	4E-13				Affymetrix, Illumina [24649327] (imputed)	N
2003	chr3	185912815	185912816	rs9867398	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q27.2	NR	rs9867398-T	0.094175	3E-12		0.022319	[0.016-0.029] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
2003	chr3	185931173	185931174	rs2268840	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q27.2	DGKG	rs2268840-T	0.771541	4E-14		0.0171774	[0.013-0.022] unit decrease	Affymetrix [NR] (imputed)	N
2003	chr3	185931173	185931174	rs2268840	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	3q27.2	DGKG	rs2268840-T	0.7876	2E-10		0.0215	[0.015-0.028] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
2003	chr3	185940338	185940339	rs7648566	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	3q27.2	NR	rs7648566-?	NR	2E-7				Affymetrix [28509962] (imputed)	N
2003	chr3	185983560	185983561	rs7619004	34241534	Lu Y	2021-07-09	Circ Genom Precis Med	Multiethnic Genome-wide Association Study of Subclinical Atherosclerosis in Individuals with Type 2 Diabetes.	Carotid artery intima-media thickness in type 2 diabetes	838 African American individuals	NA	3q27.2		rs7619004-T	0.14	7E-7		0.08	[0.041-0.119] unit increase	Affymetrix, Illumina [19600000] (imputed)	N
2003	chr3	185990391	185990392	rs1468945	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Morning person	252,287 European ancestry cases, 150,908 European ancestry controls	120,478 European ancestry cases, 127,622 European ancestry controls	3q27.2	DGKG	rs1468945-G	0.2148	6E-16		1.0369141		Affymetrix [11880941] (imputed)	N
2003	chr3	185990391	185990392	rs1468945	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q27.2	DGKG	rs1468945-G	0.2148	6E-16		1.0369669		Affymetrix [11880941] (imputed)	N
2004	chr3	185991969	185991970	rs6778003	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q27.2		rs6778003-T	0.2941	5E-12		0.016	[0.012-0.02] unit increase	Affymetrix, Illumina [11597492] (imputed)	N
2004	chr3	185991985	185991986	rs34834004	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q27.2	NR	rs34834004-G	0.505609	7E-11		0.012608	[0.0088-0.0164] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2004	chr3	185992598	185992599	rs6444121	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q27.2	DGKG	rs6444121-C	0.297594	2E-9		0.014572552	[0.0098-0.0193] unit increase	Affymetrix [93095623] (imputed)	N
2004	chr3	185998883	185998884	rs2239626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	3q27.2		rs2239626-?	NR	3E-11				NR [~ 8900000] (imputed)	N
2004	chr3	186004525	186004526	rs4686419	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q27.2		rs4686419-C	NR	5E-8		0.0095	[0.0062-0.0128] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2004	chr3	186004525	186004526	rs4686419	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q27.2	DGKG	rs4686419-T	0.69812	5E-17		0.0169692	[0.013-0.021] unit decrease	NR [13737936] (imputed)	N
2004	chr3	186004525	186004526	rs4686419	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q27.2		rs4686419-?	NR	8E-13		0.0160691	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
2004	chr3	186005173	186005174	rs7614560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q27.2		rs7614560-?	NR	2E-14				NR [~ 8900000] (imputed)	N
2004	chr3	186071444	186071445	rs11924809	27622933	Li QS	2016-09-13	Transl Psychiatry	Analysis of 23andMe antidepressant efficacy survey data: implication of circadian rhythm and neuroplasticity in bupropion response.	Response to citalopram or escitalopram and depression	2,963 European ancestry responder cases, 191,936 European ancestry healthy controls	NA	3q27.3	DGKG	rs11924809-?		1E-6		1.215	[1.122-1.316]	Illumina [~ 12000000] (imputed)	N
2004	chr3	186079260	186079261	rs73182221	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	3q27.3	DGKG	rs73182221-A	0.1116	4E-12		0.0186748	[0.013-0.024] unit increase	Affymetrix [11880941] (imputed)	N
2004	chr3	186079989	186079990	rs7617588	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	3q27.3		rs7617588-T	0.8605	3E-11		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
2004	chr3	186080796	186080797	rs80325620	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	3q27.3	NR	rs80325620-T		5E-8		0.18	[0.12-0.24] unit increase	NR [NR]	N
2004	chr3	186083482	186083483	rs73182224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q27.3		rs73182224-?	NR	8E-15				NR [~ 8900000] (imputed)	N
2004	chr3	186092558	186092559	rs35598536	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	3q27.3	DGKG	rs35598536-A	NR	5E-8	(ARO-PWY_chorismate_biosynthesis_I)	5.45223	NR Z-score increase	Illumina [8100000] (imputed)	N
2005	chr3	186128815	186128816	rs56233426	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	3q27.3	DGKG-LOC253573	rs56233426-A	NR	4E-9		1.09955	[1.07-1.13]	Illumina [NR] (imputed)	N
2005	chr3	186128815	186128816	rs56233426	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	3q27.3	DGKG-LOC253573	rs56233426-A	NR	4E-9		1.09713	[1.07-1.13]	Illumina [NR] (imputed)	N
2005	chr3	186128815	186128816	rs56233426	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3q27.3	DGKG-LOC253573	rs56233426-A	NR	7E-29		0.0811	unit increase	Illumina [15409056] (imputed)	N
2005	chr3	186128815	186128816	rs56233426	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	3q27.3	DGKG, LOC253573	rs56233426-A	NR	4E-19		1.12288	[1.1-1.15]	Affymetrix, Illumina [14822926] (imputed)	N
2005	chr3	186128815	186128816	rs56233426	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	3q27.3	DGKG, LINC02052	rs56233426-G	0.462593	1E-10				Affymetrix [28000000] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3q27.3		rs9853115-A	NR	9E-9		0.0656	[0.043-0.088] unit decrease	Affymetrix, Illumina [25844939] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	3q27.3	NR	rs9853115-T		2E-42		0.2	[0.18-0.22] unit increase	NR [NR]	N
2005	chr3	186131599	186131600	rs9853115	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3q27.3	LOC253573	rs9853115-T	0.5	2E-44				Affymetrix, Illumina [8002429] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	3q27.3	LOC253573	rs9853115-T	0.5	1E-39		1.15	NR	Affymetrix, Illumina [8002429] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	3q27.3	LOC253573	rs9853115-T	0.5	6E-10		1.11	NR	Affymetrix [at least 8002429] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	31798171	Bonnemaijer PWM	2019-11-27	Commun Biol	Multi-trait genome-wide association study identifies new loci associated with optic disc parameters.	Intraocular pressure	31,269 European ancestry individuals	NA	3q27.3	RP11-78H24.1	rs9853115-A	0.496	3E-9		0.158	[0.11-0.21] mmHg decrease	Affymetrix, Illumina [12426120] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	3q27.3	DGKG	rs9853115-?	NR	3E-43		0.1781	[0.15-0.2] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	3q27.3	DGKG	rs9853115-A	NR	4E-11		1.1084914	[1.08-1.14]	Affymetrix [up to 40000000] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	3q27.3	DGKG/TBCCD1	rs9853115-T	NR	2E-13		1.1	1.08-1.13	Affymetrix [at least 665500] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q27.3	DGKG	rs9853115-T	0.502	9E-52		0.195	[0.17-0.22] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q27.3	DGKG, LINC02052	rs9853115-T	0.5008	2E-28		0.1512	[0.12-0.18] unit increase	Affymetrix [~ 11900000] (imputed)	N
2005	chr3	186131599	186131600	rs9853115	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	3q27.3	DGKG, LINC02052	rs9853115-?	NR	3E-15		0.1	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
2005	chr3	186162918	186162919	rs4438643	28115739	Smith AH	2017-01-24	Mol Psychiatry	Genome-wide association study of therapeutic opioid dosing identifies a novel locus upstream of OPRM1.	Methadone dose in opioid dependence	1,027 European American cases, 383 African American cases	NA	3q27.3	DGKG	rs4438643-G	0.48551314508276544	7E-6	(EA)	0.2085	[0.12-0.3] unit increase	Illumina [at least 988306] (imputed)	N
2005	chr3	186182916	186182917	rs58448567	30796134	Soderholm M	2019-02-22	Neurology	Genome-wide association meta-analysis of functional outcome after ischemic stroke.	3-month functional outcome in ischaemic stroke (modified Rankin score)	1,832 European and unknown ancestry modified Rankin score 0-1 cases, 2,620 European and unknown ancestry modified Rankin score 2-6 cases	NA	3q27.3	LOC253573, DGKG, CRYGS	rs58448567-G	0.46	9E-6	(adjusted for severity)	1.26	[1.16-1.36]	Affymetrix, Illumina [~ 8500000] (imputed)	N
2005	chr3	186190685	186190686	rs11918217	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q27.3	LINC02052	rs11918217-C	0.4978	2E-14		0.1019	[0.074-0.129] unit increase	Affymetrix [~ 11900000] (imputed)	N
2005	chr3	186192445	186192446	rs141542299	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q27.3	NR	rs141542299-?	NR	2E-7		0.09187	[0.057-0.126] unit increase	Affymetrix [805426] (imputed)	N
2005	chr3	186194397	186194398	rs6770219	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	3q27.3	LOC253573	rs6770219-T	0.25	5E-6		0.032	[0.018-0.046] unit decrease	Illumina [7358575] (imputed)	N
2005	chr3	186200222	186200223	rs56962872	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Open-angle glaucoma and vertical cup-disc ratio	3,071 European ancestry open-angle glaucoma cases, 6,750 European ancestry controls, 23,899 European ancestry individuals with vertical cup to disc ratio data, 8,373 Asian ancestry individuals with vertical cup to disc ratio data	NA	3q27.3	LINC02052, CRYGS	rs56962872-G	NR	3E-8	(EA)			Illumina [NR] (imputed)	N
2005	chr3	186200222	186200223	rs56962872	29449654	Gharahkhani P	2018-02-15	Sci Rep	Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.	Glaucoma (primary open-angle)	3,071 European ancestry cases, 6,750 European ancestry controls	3,853 cases, 33,480 controls	3q27.3	CRYGS, LINC02052, TBCCD1	rs56962872-G	NR	3E-7		1.14	[1.08-1.20]	Illumina [NR] (imputed)	N
2005	chr3	186201111	186201112	rs61511521	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q27.3		rs61511521-?	NR	1E-8				NR [~ 8900000] (imputed)	N
2005	chr3	186207561	186207562	rs9872857	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q27.3		rs9872857-?	NR	8E-10				NR [~ 8900000] (imputed)	N
2005	chr3	186212976	186212977	rs7642903	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q27.3	RP11-48F14.1	rs7642903-T	0.355075	4E-9		0.013647798	[0.0091-0.0182] unit decrease	Affymetrix [93095623] (imputed)	N
2005	chr3	186213783	186213784	rs11918665	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to efavirenz-containing treatment in HIV 1 infection (virologic failure)	Up to 737 European ancestry individuals, Up to 545 Black individuals, Up to 314 Hispanic individuals	NA	3q27.3	NR	rs11918665-G	NR	9E-6	(phenotype 2)	2.7	[NR]	Illumina [> 8000000] (imputed)	N
2005	chr3	186220062	186220063	rs1868152	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	3q27.3	CRYGS	rs1868152-A	0.124	5E-8		15.679	[NR] unit increase	Illumina [527829]	N
2006	chr3	186280525	186280526	rs6804876	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacillus C abundance in stool	5,959 Finnish ancestry individuals	NA	3q27.3		rs6804876-C	0.372222	1E-8		0.0267687	[0.018-0.036] unit decrease	Illumina [7980478] (imputed)	N
2006	chr3	186287776	186287777	rs2889755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q27.3	NR	rs2889755-C	NR	4E-15		0.0259	[0.019-0.032] unit increase	Affymetrix [9000000] (imputed)	N
2006	chr3	186296357	186296358	rs77678215	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q27.3	NR	rs77678215-T	NR	2E-9		0.0386	[0.026-0.051] unit decrease	Affymetrix [9000000] (imputed)	N
2006	chr3	186311666	186311667	rs6444146	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DNAJB11	5,359 Icelandic ancestry individuals	NA	3q27.3		rs6444146-C	0.07187	1E-78		0.638736	[0.57-0.71] unit decrease	Illumina [7506463] (imputed)	N
2006	chr3	186312011	186312012	rs141245563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NUDT9	5,367 Icelandic ancestry individuals	NA	3q27.3		rs141245563-C	0.02033	4E-12		0.456998	[0.33-0.59] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186312011	186312012	rs141245563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein H6PD	5,364 Icelandic ancestry individuals	NA	3q27.3		rs141245563-C	0.02033	4E-191		1.83099	[1.71-1.95] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186312011	186312012	rs141245563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GREM2	5,358 Icelandic ancestry individuals	NA	3q27.3		rs141245563-C	0.02033	1E-45		0.884556	[0.76-1.01] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186312011	186312012	rs141245563	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ENTPD5	5,357 Icelandic ancestry individuals	NA	3q27.3		rs141245563-C	0.02033	1E-30		0.755238	[0.63-0.88] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186314626	186314627	rs73887965	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs73887965-A	0.9284375	5E-21	(AHSG, 10966_1_3)	0.45211697	[0.36-0.55] unit increase	Illumina [> 1000000] (imputed)	N
2006	chr3	186314626	186314627	rs73887965	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs73887965-A	0.9284375	2E-50	(DNAJB11, 7110_2_3)	0.7133413	[0.62-0.81] unit increase	Illumina [> 1000000] (imputed)	N
2006	chr3	186326363	186326364	rs142419423	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs142419423-C	0.009	2E-13	(Alpha-2-HS-glycoprotein, AHSG.3581.53.3)	0.97	[0.72-1.22] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186328950	186328951	rs35094235	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	AHSG	rs35094235-G	0.731	2E-132	(Alpha-2-HS-glycoprotein, AHSG.3581.53.3)	0.63	[0.57-0.69] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	3q27.3		rs2518134-C	0.367417	1E-11		0.02913	[0.021-0.038] unit decrease	NR [11722792] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	3q27.3		rs2518134-C	0.367548	5E-8		0.0232707	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	3q27.3		rs2518134-C	0.367417	2E-8		0.0233098	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in IDL	115,082 European ancestry individuals	NA	3q27.3		rs2518134-C	0.367548	6E-19		0.0379667	[0.03-0.046] unit decrease	NR [11722792] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	3q27.3	NR	rs2518134-?	NR	5E-10	(a2-HS-Glycoprotein)			Illumina [~ 4000000] (imputed)	N
2006	chr3	186332181	186332182	rs2518134	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	AHSG	rs2518134-T	0.63546875	4E-25	(AHSG, 3581_53_3)	0.2524802	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
2006	chr3	186332570	186332571	rs2593813	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	3q27.3	NR	rs2593813-A	0.6342	6E-47		0.003279	[0.0028-0.0037] unit increase	Affymetrix [NR] (imputed)	N
2006	chr3	186334003	186334004	rs2070632	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	NR	rs2070632-?	NR	2E-34	(EA, Alpha-2-HS-glycoprotein)			Affymetrix [509946]	N
2006	chr3	186335940	186335941	rs2070633	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	Fetuin A plasma levels	400 French ancestry individuals	NA	3q27.3		rs2070633-C	NR	4E-20		0.152	[0.12-0.18] ug/mL decrease	Illumina [5201092] (imputed)	N
2006	chr3	186335940	186335941	rs2070633	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AHSG	5,361 Icelandic ancestry individuals	NA	3q27.3		rs2070633-T	0.4459	3E-37		0.228606	[0.19-0.26] unit decrease	Illumina [7506463] (imputed)	N
2006	chr3	186335940	186335941	rs2070633	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q27.3	NR	rs2070633-?	NR	2E-10	(a2-HS-Glycoprotein)			Illumina [~ 4000000] (imputed)	N
2006	chr3	186335940	186335941	rs2070633	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	NR	rs2070633-?	NR	2E-38	(EA, Alpha-2-HS-glycoprotein)			Affymetrix [509946]	N
2006	chr3	186336026	186336027	rs2070634	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	3q27.3		rs2070634-T	0.485682	1E-19		0.0372031	[0.029-0.045] unit decrease	NR [11722792] (imputed)	N
2006	chr3	186337826	186337827	rs2518136	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	3q27.3		rs2518136-T	0.499071	4E-10		0.0257213	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
2006	chr3	186337826	186337827	rs2518136	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	RP11-573D15.8, AHSG	rs2518136-T	0.4582495	2E-39	(Alpha-2-HS-glycoprotein)	0.5564	[0.48-0.64] unit decrease	Affymetrix [509946]	N
2006	chr3	186338563	186338564	rs35457250	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	AHSG	rs35457250-T	0.009	5E-18	(Gremlin-2, GREM2.5598.3.3)	1.12	[0.87-1.37] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186338563	186338564	rs35457250	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	AHSG	rs35457250-T	0.009	1E-56	(GDH/6PGL endoplasmic bifunctional protein, H6PD.7161.25.3)	1.99	[1.74-2.24] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186339706	186339707	rs13098866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs13098866-A	0.53328125	7E-15	(AHSG, 3581_53_3)	0.18682562	[0.14-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186339706	186339707	rs13098866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs13098866-A	0.53328125	7E-12	(HRG, 4996_66_1)	0.17165978	[0.12-0.22] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186339706	186339707	rs13098866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs13098866-A	0.53328125	3E-9	(KNG1, 4495_33_2)	0.1499618	[0.1-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2006	chr3	186339706	186339707	rs13098866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs13098866-A	0.53328125	3E-12	(DEPP, 7178_59_3)	0.1760013	[0.13-0.23] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186339706	186339707	rs13098866	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs13098866-A	0.53328125	2E-371	(AHSG, 10966_1_3)	0.9163373	[0.88-0.95] unit increase	Illumina [> 1000000] (imputed)	N
2006	chr3	186340645	186340646	rs9869478	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of saturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	3q27.3		rs9869478-T	0.413035	3E-8		0.0240196	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
2006	chr3	186342059	186342060	rs13073106	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	3q27.3		rs13073106-T	NR	2E-48		0.0341	[0.03-0.039] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
2006	chr3	186342783	186342783	rs149388702	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs149388702-TTTGTTTTGTG	0.518	4E-104	(Alpha-2-HS-glycoprotein, AHSG.3581.53.3)	0.52	[0.48-0.56] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186349411	186349412	rs13084035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	3q27.3	NR	rs13084035-T	NR	7E-15		0.0201	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2006	chr3	186360408	186360409	rs3733159	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	FETUB, RP11-573D15.8	rs3733159-G	0.3124373	3E-15	(EA, Persulfide dioxygenase ETHE1, mitochondrial)	0.3641	[0.28-0.45] unit increase	Affymetrix [509946]	N
2006	chr3	186360408	186360409	rs3733159	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	FETUB, RP11-573D15.8	rs3733159-G	0.3124373	1E-9	(EA, Fetuin-B)	0.2662	[0.18-0.35] unit increase	Affymetrix [509946]	N
2006	chr3	186365954	186365955	rs72625023	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q27.3	FETUB, RP11-134F2.2	rs72625023-T	0.1276	2E-11	(LXN)	0.56892	[0.4-0.74] unit increase	Illumina [8683751] (imputed)	N
2006	chr3	186376287	186376288	rs116605311	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FETUB	5,346 Icelandic ancestry individuals	NA	3q27.3		rs116605311-A	0.04287	2E-38		0.559806	[0.48-0.64] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186377483	186377484	rs138482570	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FETUB	5,346 Icelandic ancestry individuals	NA	3q27.3		rs138482570-A	0.09185	6E-23		0.302824	[0.24-0.36] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186377728	186377729	rs11720187	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F9	5,367 Icelandic ancestry individuals	NA	3q27.3		rs11720187-G	0.4163	2E-15		0.154786	[0.12-0.19] unit decrease	Illumina [7506463] (imputed)	N
2006	chr3	186378383	186378384	rs4438644	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK9	5,361 Icelandic ancestry individuals	NA	3q27.3		rs4438644-T	0.4278	4E-15		0.145684	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186378430	186378431	rs4440112	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB113	5,364 Icelandic ancestry individuals	NA	3q27.3		rs4440112-C	0.4279	2E-13		0.141819	[0.1-0.18] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	3q27.3		rs56112115-A	0.1656	9E-17		0.211903	[0.16-0.26] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	9E-36	(GCSH, 10956_82_3)	0.420606	[0.36-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	8E-28	(FETUB, 3367_8_3)	0.35599422	[0.29-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	8E-22	(MAPK14, 5007_1_1)	0.3172856	[0.25-0.38] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	7E-231	(HRG, 4996_66_1)	1.0101994	[0.95-1.07] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	6E-9	(PFKFB3, 12456_5_3)	0.19491343	[0.13-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	6E-110	(MAP2K4, 5242_37_3)	0.71487737	[0.65-0.78] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	5E-410	(DEPP, 7178_59_3)	1.2838328	[1.23-1.33] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	4E-9	(RNF13, 8087_250_3)	0.20020457	[0.13-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	3E-38	(LRPPRC, 9046_46_3)	0.42744663	[0.36-0.49] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	2E-40	(HMGN1, 9187_2_3)	0.4449382	[0.38-0.51] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	2E-15	(ACE, 10714_7_3)	0.26610816	[0.2-0.33] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	1E-61	(XG, 10492_51_3)	0.5489395	[0.49-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	1E-40	(VSNL1, 13522_20_3)	0.4366841	[0.37-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	1E-24	(TMEM87B, 13485_20_3)	0.34481388	[0.28-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378730	186378731	rs56112115	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs56112115-C	0.84109375	1E-132	(HNRNPH1, 14309_8_3)	0.79707676	[0.74-0.86] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186378976	186378977	rs375818588	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.3	FETUB, HRG	rs375818588-G	0.953323	5E-8	(268 ms)	0.0726053	[0.046-0.099] unit decrease	Affymetrix [10000000] (imputed)	N
2006	chr3	186378976	186378977	rs375818588	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.3	FETUB, HRG	rs375818588-G	0.953323	4E-8	(264 ms)	0.0731855	[0.047-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
2006	chr3	186378976	186378977	rs375818588	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.3	FETUB, HRG	rs375818588-G	0.953323	3E-8	(258 ms)	0.073803	[0.047-0.1] unit decrease	Affymetrix [10000000] (imputed)	N
2006	chr3	186378976	186378977	rs375818588	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.3	FETUB, HRG	rs375818588-G	0.953323	2E-8	(262 ms)	0.0752227	[0.049-0.102] unit decrease	Affymetrix [10000000] (imputed)	N
2006	chr3	186378976	186378977	rs375818588	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q27.3	FETUB, HRG	rs375818588-G	0.953323	2E-8	(260 ms)	0.0748855	[0.048-0.101] unit decrease	Affymetrix [10000000] (imputed)	N
2006	chr3	186379355	186379356	rs186268843	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs186268843-A	0.21	1E-592	(Protein DEPP, DEPP.7178.59.3)	1.16	[1.12-1.2] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186379588	186379589	rs114450524	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XG	5,325 Icelandic ancestry individuals	NA	3q27.3		rs114450524-A	0.04544	3E-12		0.268913	[0.19-0.34] unit increase	Illumina [7506463] (imputed)	N
2006	chr3	186379588	186379589	rs114450524	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs114450524-A	0.049	6E-21	(Leucine-rich PPR motif-containing protein, mitochondrial, LRPPRC.9046.46.3)	0.53	[0.41-0.65] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186380166	186380167	rs9835865	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LEAP2	5,368 Icelandic ancestry individuals	NA	3q27.3		rs9835865-A	0.4309	2E-14		0.147781	[0.11-0.19] unit decrease	Illumina [7506463] (imputed)	N
2006	chr3	186381024	186381025	rs9878767	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs9878767-T	0.229	8E-32	(Transmembrane protein 87B, TMEM87B.13485.20.3)	0.34	[0.28-0.4] unit decrease	Affymetrix [10572788] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	9E-27	(TMEM87B, 13485_20_3)	0.36251095	[0.3-0.43] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	8E-247	(HRG, 4996_66_1)	1.045057	[0.99-1.1] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	8E-10	(PFKFB3, 12456_5_3)	0.20650437	[0.14-0.27] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	7E-45	(VSNL1, 13522_20_3)	0.46189588	[0.4-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	6E-122	(MAP2K4, 5242_37_3)	0.7547389	[0.69-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	4E-46	(HMGN1, 9187_2_3)	0.47778505	[0.41-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	4E-40	(LRPPRC, 9046_46_3)	0.440113	[0.38-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	3E-42	(GCSH, 10956_82_3)	0.46075177	[0.4-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	3E-25	(FETUB, 3367_8_3)	0.34043586	[0.28-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	2E-441	(DEPP, 7178_59_3)	1.3263876	[1.28-1.38] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	2E-16	(ACE, 10714_7_3)	0.27758044	[0.21-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	1E-67	(XG, 10492_51_3)	0.5778444	[0.51-0.64] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	1E-22	(MAPK14, 5007_1_1)	0.32569045	[0.26-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs55636108-T	0.84265625	1E-145	(HNRNPH1, 14309_8_3)	0.83669955	[0.78-0.9] unit decrease	Illumina [> 1000000] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs55636108-C	0.212	3E-29	(Beta-1,4-glucuronyltransferase 1, B3GNT1.8259.25.3)	0.33	[0.27-0.39] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186381261	186381262	rs55636108	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs55636108-C	0.212	3E-205	(Dual specificity mitogen-activated protein kinase kinase 4, MAP2K4.5242.37.3)	0.81	[0.75-0.87] unit increase	Affymetrix [10572788] (imputed)	N
2006	chr3	186381716	186381717	rs4452320	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM87B	5,357 Icelandic ancestry individuals	NA	3q27.3		rs4452320-A	0.2709	5E-44		0.289908	[0.25-0.33] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186386775	186386776	rs4516605	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs4516605-G	0.007	9E-12	(Leucine-rich PPR motif-containing protein, mitochondrial, LRPPRC.9046.46.3)	1.07	[0.76-1.38] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186387298	186387299	rs16860974	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q27.3	NR	rs16860974-?	NR	4E-40	(HRG)			Illumina [~ 4000000] (imputed)	N
2007	chr3	186387446	186387447	rs11721235	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPH1	5,367 Icelandic ancestry individuals	NA	3q27.3		rs11721235-A	0.04553	2E-32		0.537825	[0.45-0.63] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186388027	186388028	rs2555515	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	FETUB, RP11-573D15.8, HRG	rs2555515-C	0.4259819	3E-25	(EA, Histidine-rich glycoprotein)	0.4527	[0.37-0.54] unit decrease	Affymetrix [509946]	N
2007	chr3	186388809	186388810	rs72625027	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XG	5,325 Icelandic ancestry individuals	NA	3q27.3		rs72625027-A	0.1146	1E-107		0.538427	[0.49-0.59] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186388809	186388810	rs72625027	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RNF13	5,351 Icelandic ancestry individuals	NA	3q27.3		rs72625027-A	0.1146	6E-19		0.248958	[0.19-0.3] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186389558	186389559	rs10770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein RIPK2	5,352 Icelandic ancestry individuals	NA	3q27.3		rs10770-C	0.1392	3E-15		0.206435	[0.16-0.26] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186389558	186389559	rs10770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXT1	5,366 Icelandic ancestry individuals	NA	3q27.3		rs10770-C	0.1392	3E-50		0.395325	[0.34-0.45] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186389558	186389559	rs10770	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BNIP3	5,366 Icelandic ancestry individuals	NA	3q27.3		rs10770-C	0.1392	6E-13		0.193396	[0.14-0.25] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186389768	186389769	rs114232169	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Tyrosine levels	114,913 European ancestry individuals	NA	3q27.3		rs114232169-T	0.332192	5E-14		0.0327737	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
2007	chr3	186389827	186389828	rs9856702	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs9856702-G	0.117	5E-18	(Protocadherin-10, PCDH10.8780.2.3)	0.33	[0.25-0.41] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186390626	186390627	rs9898	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K4	5,365 Icelandic ancestry individuals	NA	3q27.3		rs9898-T	0.2993	7E-45		0.28595	[0.25-0.33] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186390626	186390627	rs9898	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	3q27.3		rs9898-T	NR	1E-8		0.0114	[0.0075-0.0153] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
2007	chr3	186390626	186390627	rs9898	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	376 European ancestry individuals	400 European ancestry individuals	3q27.3	NR	rs9898-?	NR	4E-18	(HRG)			Illumina [~ 4000000] (imputed)	N
2007	chr3	186390626	186390627	rs9898	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	3q27.3	NR	rs9898-?	NR	5E-10	(Histidine-rich glycoprotein)			Illumina [514227]	N
2007	chr3	186390626	186390627	rs9898	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	3q27.3	AHSG, FETUB, HRG	rs9898-C	NR	1E-111		1.0	[0.92-1.08] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2007	chr3	186390626	186390627	rs9898	20303064	Houlihan LM	2010-03-18	Am J Hum Genet	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	3q27.3	HRG	rs9898-T	0.32	1E-11		0.26	[0.19-0.33] unit increase	Illumina [542050]	N
2007	chr3	186391066	186391067	rs9866126	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ETHE1	5,354 Icelandic ancestry individuals	NA	3q27.3		rs9866126-G	0.3166	3E-21		0.184027	[0.15-0.22] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186391273	186391274	rs59123177	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPPRC	5,364 Icelandic ancestry individuals	NA	3q27.3		rs59123177-A	0.3194	4E-90		0.394842	[0.36-0.43] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186391273	186391274	rs59123177	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAC1	5,351 Icelandic ancestry individuals	NA	3q27.3		rs59123177-A	0.3194	7E-60		0.30497	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186391273	186391274	rs59123177	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs59123177-A	0.351	5E-25	(E3 ubiquitin-protein ligase RNF13, RNF13.8087.250.3)	0.26	[0.2-0.32] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186391273	186391274	rs59123177	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs59123177-A	0.351	4E-12	(HLA class II histocompatibility antigen, DP beta 1 chain, HLA.DPB1.8755.202.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186393181	186393182	rs12493926	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NXT1	5,366 Icelandic ancestry individuals	NA	3q27.3		rs12493926-C	0.4448	4E-63		0.310379	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XG	5,325 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	3E-57		0.295633	[0.26-0.33] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TGFB3	5,339 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	3E-17		0.166508	[0.13-0.21] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SULF2	5,368 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	9E-14		0.164387	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFKFB3	5,350 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	2E-19		0.191513	[0.15-0.23] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MPZ	5,364 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	2E-258		0.690194	[0.65-0.73] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK3	5,349 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	3E-33		0.24679	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRPPRC	5,364 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	2E-13		0.162238	[0.12-0.21] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KIAA1324L	5,362 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	1E-68		0.380096	[0.34-0.42] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPH1	5,367 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	5E-246		0.685486	[0.65-0.73] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CRTAC1	5,351 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	1E-272		0.663704	[0.63-0.7] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein B4GAT1	5,367 Icelandic ancestry individuals	NA	3q27.3		rs7625980-C	0.2373	1E-16		0.184569	[0.14-0.23] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186393546	186393547	rs7625980	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs7625980-C	0.215	1E-185	(Dual specificity mitogen-activated protein kinase kinase 4, MAP2K4.5242.37.3)	0.78	[0.72-0.84] unit decrease	Affymetrix [10572788] (imputed)	N
2007	chr3	186393785	186393786	rs7614709	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs7614709-A	0.215	4E-167	(Protein DEPP, DEPP.7178.59.3)	0.75	[0.69-0.81] unit decrease	Affymetrix [10572788] (imputed)	N
2007	chr3	186393785	186393786	rs7614709	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs7614709-A	0.215	1E-14	(Extracellular sulfatase Sulf-2, SULF2.8305.18.3)	0.23	[0.17-0.29] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186393884	186393885	rs7626301	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ACE	5,362 Icelandic ancestry individuals	NA	3q27.3		rs7626301-C	0.4449	3E-31		0.218701	[0.18-0.26] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VSNL1	5,347 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	3E-103		0.52053	[0.47-0.57] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein TMEM87B	5,357 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	1E-58		0.406446	[0.36-0.46] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SLC35G2	5,366 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	4E-22		0.24283	[0.19-0.29] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PFKFB3	5,350 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	3E-20		0.229472	[0.18-0.28] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAPK14	5,362 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	1E-39		0.334119	[0.28-0.38] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K4	5,365 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	4E-218		0.752721	[0.71-0.8] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HNRNPH1	5,367 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	3E-288		0.85828	[0.81-0.9] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HMGN1	5,355 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	5E-136		0.602035	[0.55-0.65] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCSH	5,365 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	2E-85		0.495218	[0.45-0.54] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CD27	5,357 Icelandic ancestry individuals	NA	3q27.3		rs16860992-C	0.1594	6E-16		0.203186	[0.15-0.25] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs16860992-C	0.204	3E-531	(Protein DEPP, DEPP.7178.59.3)	1.13	[1.09-1.17] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186394037	186394038	rs16860992	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs16860992-C	0.204	2E-68	(Non-histone chromosomal protein HMG-14, HMGN1.9187.2.3)	0.51	[0.45-0.57] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186394220	186394221	rs60693099	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	NR	rs60693099-T	0.474	2E-290	(Protocadherin-10, PCDH10.8780.2.3)	0.76	[0.72-0.8] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395112	186395113	rs2228243	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	3q27.3	HRG	rs2228243-G	0.2105	8E-11	(LXN)	0.4119	[0.29-0.54] unit increase	Illumina [8683751] (imputed)	N
2007	chr3	186395112	186395113	rs2228243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs2228243-G	0.204	2E-52	(Transmembrane protein 87B, TMEM87B.13485.20.3)	0.45	[0.39-0.51] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395112	186395113	rs2228243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs2228243-G	0.204	2E-165	(Leucine-rich PPR motif-containing protein, mitochondrial, LRPPRC.9046.46.3)	0.75	[0.69-0.81] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395112	186395113	rs2228243	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs2228243-G	0.204	1E-237	(Dual specificity mitogen-activated protein kinase kinase 4, MAP2K4.5242.37.3)	0.87	[0.81-0.93] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395112	186395113	rs2228243	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs2228243-G	0.2081244	5E-94	(Histidine-rich glycoprotein)	1.007	[0.92-1.09] unit increase	Affymetrix [509946]	N
2007	chr3	186395112	186395113	rs2228243	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs2228243-G	0.2081244	4E-82	(Dual specificity mitogen-activated protein kinase kinase 4)	0.9421	[0.85-1.03] unit increase	Affymetrix [509946]	N
2007	chr3	186395112	186395113	rs2228243	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs2228243-G	0.2081244	3E-10	(EA, Semaphorin-3A)	0.3345	[0.23-0.44] unit increase	Affymetrix [509946]	N
2007	chr3	186395112	186395113	rs2228243	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs2228243-G	0.2081244	2E-45	(EA, CD27 antigen)	0.7302	[0.63-0.83] unit increase	Affymetrix [509946]	N
2007	chr3	186395399	186395400	rs2229331	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs2229331-A	0.007	3E-71	(SUN domain-containing protein 5, SUN5.11260.47.3)	2.5	[2.23-2.77] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395435	186395436	rs1042445	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q27.3	NR	rs1042445-?	NR	7E-36	(MP2K4)			Illumina [~ 4000000] (imputed)	N
2007	chr3	186395435	186395436	rs1042445	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1042445-T	0.215	3E-76	(UPF0577 protein KIAA1324-like, KIAA1324L.8363.18.3)	0.53	[0.47-0.59] unit decrease	Affymetrix [10572788] (imputed)	N
2007	chr3	186395435	186395436	rs1042445	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1042445-T	0.215	1E-475	(Protocadherin-10, PCDH10.8780.2.3)	1.1	[1.06-1.14] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186395435	186395436	rs1042445	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1042445-T	0.215	1E-131	(Non-histone chromosomal protein HMG-14, HMGN1.9187.2.3)	0.68	[0.62-0.74] unit decrease	Affymetrix [10572788] (imputed)	N
2007	chr3	186395435	186395436	rs1042445	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs1042445-T	0.2326981	8E-78	(Dual specificity mitogen-activated protein kinase kinase 4)	0.8791	[0.79-0.96] unit decrease	Affymetrix [509946]	N
2007	chr3	186395435	186395436	rs1042445	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs1042445-T	0.2326981	6E-18	(EA, Estrogen receptor)	0.4376	[0.34-0.54] unit decrease	Affymetrix [509946]	N
2007	chr3	186395435	186395436	rs1042445	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	HRG, RP11-573D15.8	rs1042445-T	0.2326981	2E-28	(EA, CD27 antigen)	0.556	[0.46-0.65] unit decrease	Affymetrix [509946]	N
2007	chr3	186395571	186395572	rs1042464	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VSNL1	5,347 Icelandic ancestry individuals	NA	3q27.3		rs1042464-T	0.4449	1E-100		0.377713	[0.34-0.41] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186395571	186395572	rs1042464	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1042464-T	0.474	7E-22	(NTF2-related export protein 1, NXT1.9942.2.3)	0.24	[0.2-0.28] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SAT2	5,352 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	2E-22		0.20341	[0.16-0.24] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAP2K4	5,365 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	7E-211		0.632371	[0.59-0.67] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRP1	5,362 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	1E-12		0.156999	[0.11-0.2] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LANCL1	5,360 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	1E-14		0.166898	[0.12-0.21] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL22	5,359 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	9E-31		0.248327	[0.21-0.29] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GCSH	5,365 Icelandic ancestry individuals	NA	3q27.3		rs1863622-C	0.2372	7E-145		0.539777	[0.5-0.58] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	3q27.3	HRG	rs1863622-?		1E-8				Affymetrix, Illumina [NR] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1863622-C	0.216	3E-34	(Tumor necrosis factor receptor superfamily member 16, NGFR.8949.3.3)	0.37	[0.31-0.43] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186396615	186396616	rs1863622	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	HRG	rs1863622-C	0.216	2E-16	(Gastrin-releasing peptide, GRP.8400.74.3)	0.25	[0.19-0.31] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	8E-23	(DEPP, 7178_59_3)	0.24522324	[0.2-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	7E-37	(KNG1, 7784_1_3)	0.30695054	[0.26-0.35] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	6E-13	(KLKB1, 4152_58_2)	0.16891897	[0.12-0.21] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	5E-9	(HNRNPH1, 14309_8_3)	0.14650542	[0.098-0.195] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	5E-33	(KNG1, 4495_33_2)	0.29783937	[0.25-0.35] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	3E-58	(PCDH10, 8780_2_3)	0.38687652	[0.34-0.43] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	2E-17	(F11, 2190_55_1)	0.1973947	[0.15-0.24] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	1E-24	(STX7, 8274_64_3)	0.25333554	[0.21-0.3] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186429423	186429424	rs9817038	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs9817038-T	0.51171875	1E-10	(VSNL1, 13522_20_3)	0.15664515	[0.11-0.2] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186432743	186432744	rs1656939	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-18 levels	3,636 Finnish ancestry individuals	NA	3q27.3	NR	rs1656939-T		2E-6		0.1132	[0.067-0.159] SD units decrease	NR [10700000] (imputed)	N
2007	chr3	186432838	186432839	rs11919484	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q27.3	KNG1	rs11919484-T	0.3165	6E-24		0.0026	[0.002-0.0032] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2007	chr3	186432838	186432839	rs11919484	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	3q27.3	KNG1	rs11919484-T	0.3144	1E-17		0.0023	[0.0015-0.0031] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
2007	chr3	186432838	186432839	rs11919484	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	165,726 East Asian ancestry individuals	NA	3q27.3	KNG1	rs11919484-T	0.3042	2E-8		0.004	[0.0026-0.0054] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
2007	chr3	186433045	186433046	rs11927941	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	3q27.3		rs11927941-G	0.298668	2E-9		0.0186866	[0.013-0.025] unit increase	Illumina [13478778] (imputed)	N
2007	chr3	186433045	186433046	rs11927941	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q27.3	KNG1	rs11927941-G	0.3213	6E-16		8.085	NR z score decrease	Illumina [26237160] (imputed)	N
2007	chr3	186433045	186433046	rs11927941	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	3q27.3	ETV5, KNG1	rs11927941-G	0.312	6E-10		0.206	[0.008-0.404] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
2007	chr3	186433098	186433099	rs11924390	20876611	Wu Y	2010-09-27	Hum Mol Genet	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry female individuals	1,774 Filipino ancestry offspring	3q27.3	KNG1	rs11924390-C	0.50	2E-9		0.06	[0.04-0.08] unit decrease	Affymetrix [2073674] (imputed)	N
2007	chr3	186433573	186433574	rs3774292	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q27.3		rs3774292-T	NR	7E-26		0.0182	[0.015-0.022] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2007	chr3	186433573	186433574	rs3774292	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate	70,762 European ancestry diabetic individuals, 152,624 European ancestry non-diabetic individuals, 20,967 African American diabetic individuals, 36,369 African American non-diabetic individuals	567,401 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,359 South Asian ancestry individuals, 13,842 African American ancestry individuals, 4,961 Hispanic ancestry individuals	3q27.3	KNG1	rs3774292-A	0.683	9E-10	(EA)	0.0023	[0.0015-0.0031] unit increase	Affymetrix [NR] (imputed)	N
2007	chr3	186434107	186434108	rs10440057	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q27.3		rs10440057-A	NR	9E-9		0.0118	[0.0079-0.0157] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2007	chr3	186434490	186434491	rs5029970	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	3q27.3	KNG1	rs5029970-?	NR	5E-9		0.02377	[0.016-0.032] unit decrease novel	Illumina [6108953] (imputed)	N
2007	chr3	186435369	186435370	rs1050274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q27.3	NR	rs1050274-A	NR	5E-21		0.0239	[0.019-0.029] unit decrease	Affymetrix [9000000] (imputed)	N
2007	chr3	186435369	186435370	rs1050274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	3q27.3	NR	rs1050274-A	NR	7E-18		0.022	[0.017-0.027] unit increase	Affymetrix [9000000] (imputed)	N
2007	chr3	186435369	186435370	rs1050274	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q27.3	NR	rs1050274-A	NR	2E-20		0.0237	[0.019-0.029] unit increase	Affymetrix [9000000] (imputed)	N
2007	chr3	186438313	186438314	rs5029981	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function (2 kHz)	131 Chinese ancestry dizygotic twin pairs	NA	3q27.3		rs5029981-?	NR	1E-6				Illumina [1365315]	N
2007	chr3	186438345	186438346	rs2689197	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,346 Icelandic ancestry individuals	NA	3q27.3		rs2689197-T	0.3882	1E-9		0.101614	[0.069-0.134] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186439997	186439998	rs1403694	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8	rs1403694-C	0.38833	1E-12	(EA, Histidine-rich glycoprotein)	0.3196	[0.23-0.41] unit increase	Affymetrix [509946]	N
2007	chr3	186441547	186441553	rs113946377	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q27.3	NR	rs113946377-?	NR	4E-19	(Kininogen  HMW)			Illumina [~ 4000000] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	35264221	Caron B	2022-03-09	Genome Med	Integrative genetic and immune cell analysis of plasma proteins in healthy donors identifies novel associations involving primary immune deficiency genes.	ErbB3 plasma levels	400 French ancestry individuals	NA	3q27.3		rs2304456-T	NR	3E-10		0.355	[0.25-0.46] ng/mL increase	Illumina [5201092] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX7	5,362 Icelandic ancestry individuals	NA	3q27.3		rs2304456-G	0.1197	2E-51		0.427283	[0.37-0.48] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,346 Icelandic ancestry individuals	NA	3q27.3		rs2304456-G	0.1197	8E-50		0.369346	[0.32-0.42] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein A1CF	5,367 Icelandic ancestry individuals	NA	3q27.3		rs2304456-G	0.1197	9E-44		0.40743	[0.35-0.46] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related apoptosis-inducing ligand levels	21,758 European ancestry individuals	9,173 individuals	3q27.3		rs2304456-T	0.89	3E-56		0.2612	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	KNG1	rs2304456-G	0.12	4E-45	(Syntaxin-7, STX7.8274.64.3)	0.52	[0.44-0.6] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	KNG1	rs2304456-G	0.12	3E-199	(Mono [ADP-ribose] polymerase PARP16, PARP16.7881.244.3)	1.01	[0.95-1.07] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	KNG1	rs2304456-G	0.12	2E-36	(APOBEC1 complementation factor, A1CF.12423.38.3)	0.46	[0.38-0.54] unit increase	Affymetrix [10572788] (imputed)	N
2007	chr3	186445051	186445052	rs2304456	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8, RP11-795A2.3	rs2304456-G	0.1029116	3E-97	(Kininogen-1)	1.366	[1.25-1.48] unit decrease	Affymetrix [509946]	N
2007	chr3	186445051	186445052	rs2304456	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8, RP11-795A2.3	rs2304456-G	0.1029116	1E-10	(Leucine carboxyl methyltransferase 1)	0.4564	[0.32-0.59] unit increase	Affymetrix [509946]	N
2007	chr3	186447046	186447047	rs266723	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,362 Icelandic ancestry individuals	NA	3q27.3		rs266723-C	0.4403	5E-227		0.560466	[0.53-0.59] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186448927	186448928	rs5030103	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FETUB	5,346 Icelandic ancestry individuals	NA	3q27.3		rs5030103-C	0.01317	9E-17		0.658929	[0.5-0.81] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	9E-493	(KNG1, 4495_33_2)	1.5444537	[1.49-1.6] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	9E-25	(A1CF, 12423_38_3)	0.38890848	[0.32-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	7E-36	(HMGN1, 9187_2_3)	0.47000393	[0.4-0.54] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	7E-27	(DEPP, 7178_59_3)	0.40755534	[0.33-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	6E-30	(HRG, 4996_66_1)	0.42718276	[0.35-0.5] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	5E-10	(XG, 10492_51_3)	0.23570313	[0.16-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	5E-10	(F11, 2190_55_1)	0.22014123	[0.15-0.29] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	4E-38	(KNG1, 4918_21_1)	0.4823097	[0.41-0.55] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	4E-24	(HNRNPH1, 14309_8_3)	0.38473803	[0.31-0.46] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	4E-21	(MAP2K4, 5242_37_3)	0.35095975	[0.28-0.42] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	3E-33	(KNG1, 7784_1_3)	0.4440023	[0.37-0.52] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	3E-17	(KLKB1, 4152_58_2)	0.30165368	[0.23-0.37] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	3E-14	(LRPPRC, 9046_46_3)	0.28513736	[0.21-0.36] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	3E-13	(ADM, 14115_34_3)	0.27593854	[0.2-0.35] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	3E-10	(NCK1, 5014_49_1)	0.23965478	[0.17-0.31] unit increase	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	2E-12	(GCSH, 10956_82_3)	0.26979747	[0.2-0.34] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186449121	186449122	rs5030044	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs5030044-A	0.8784375	1E-33	(STX7, 8274_64_3)	0.45432758	[0.38-0.53] unit decrease	Illumina [> 1000000] (imputed)	N
2007	chr3	186450862	186450863	rs5030049	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,347 Icelandic ancestry individuals	NA	3q27.3		rs5030049-C	0.1193	2E-59		0.444676	[0.39-0.5] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186450862	186450863	rs5030049	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BCL2L2	5,344 Icelandic ancestry individuals	NA	3q27.3		rs5030049-C	0.1193	5E-12		0.185577	[0.13-0.24] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186450862	186450863	rs5030049	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADM	5,353 Icelandic ancestry individuals	NA	3q27.3		rs5030049-C	0.1193	3E-21		0.263818	[0.21-0.32] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186450862	186450863	rs5030049	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	NR	rs5030049-?	NR	1E-96	(EA, Kininogen-1)			Affymetrix [509946]	N
2007	chr3	186451235	186451236	rs4686799	29123153	Lee TH	2017-11-09	Sci Rep	A genome-wide association study links small-vessel ischemic stroke to autophagy.	Small vessel stroke	342 Chinese ancestry cases, 1,731 Chinese ancestry control	188 Chinese ancestry cases, 1,265 Chinese ancestry control	3q27.3	KNG1	rs4686799-C	0.6537	9E-6		1.392	[1.202-1.612]	Affymetrix [552090] (imputed)	N
2007	chr3	186453430	186453434	rs138610068	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	KNG1	rs138610068-G	0.12	1E-13	(Adrenomedullin, ADM.14115.34.3)	0.28	[0.2-0.36] unit decrease	Affymetrix [10572788] (imputed)	N
2007	chr3	186454179	186454180	rs5030062	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein STX7	5,362 Icelandic ancestry individuals	NA	3q27.3		rs5030062-C	0.3532	2E-14		0.148411	[0.11-0.19] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186454179	186454180	rs5030062	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KNG1	5,346 Icelandic ancestry individuals	NA	3q27.3		rs5030062-C	0.3532	1E-38		0.219649	[0.19-0.25] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186454179	186454180	rs5030062	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN1;CAPNS1	5,358 Icelandic ancestry individuals	NA	3q27.3		rs5030062-C	0.3532	5E-58		0.295784	[0.26-0.33] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186454179	186454180	rs5030062	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8	rs5030062-C	0.3850402	3E-40	(Coagulation Factor XI)	0.5581	[0.48-0.64] unit increase	Affymetrix [509946]	N
2007	chr3	186454179	186454180	rs5030062	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8	rs5030062-C	0.3850402	2E-35	(Plasma kallikrein)	0.5188	[0.44-0.6] unit increase	Affymetrix [509946]	N
2007	chr3	186454179	186454180	rs5030062	25477429	Lieb W	2014-12-04	Circ Cardiovasc Genet	Genome-wide meta-analyses of plasma renin activity and concentration reveal association with the kininogen 1 and prekallikrein genes.	Plasma renin activity levels	5,275 European ancestry individuals	NA	3q27.3	KNG1	rs5030062-A	NR	9E-9				Affymetrix, Illumina [~ 2500000] (imputed)	N
2007	chr3	186454179	186454180	rs5030062	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3q27.3	KNG1	rs5030062-A	0.61	6E-13	(bradykinin, des-arg(9))	0.072	[0.052-0.092] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
2007	chr3	186455787	186455788	rs5030073	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	vascular endothelial growth factor D levels	21,758 European ancestry individuals	9,173 individuals	3q27.3		rs5030073-A	0.58	6E-22		0.0861	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2007	chr3	186458321	186458322	rs3856930	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	KNG1, RP11-573D15.8, RP11-795A2.3	rs3856930-T	0.3516097	8E-15	(EA, Kininogen-1)	0.3526	[0.27-0.44] unit increase	Affymetrix [509946]	N
2007	chr3	186458909	186458910	rs5030081	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Activated partial thromboplastin time	37,767 Japanese ancestry individuals	NA	3q27.3	KNG1	rs5030081-?	NR	4E-49		0.1211	[0.1-0.14] unit decrease novel	Illumina [6108953] (imputed)	N
2007	chr3	186458948	186458949	rs5030082	34668383	Leskela J	2021-10-20	J Am Heart Assoc	Genetic Profile of Endotoxemia Reveals an Association With Thromboembolism and Stroke.	Serum lipopolysaccharide activity	11,296 European ancestry individuals	NA	3q27.3	NR	rs5030082-G	0.3764	3E-19		0.1216	[0.095-0.148] unit increase	Affymetrix, Illumina [9900000] (imputed)	N
2007	chr3	186459226	186459227	rs698078	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	3q27.3	NR	rs698078-?	NR	5E-7		0.0507	[0.031-0.07] unit decrease	Affymetrix, Illumina [12923718] (imputed)	N
2007	chr3	186459926	186459927	rs710446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN1B1	5,358 Icelandic ancestry individuals	NA	3q27.3		rs710446-C	0.3806	5E-14		0.144148	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186459926	186459927	rs710446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein KLKB1	5,364 Icelandic ancestry individuals	NA	3q27.3		rs710446-C	0.3806	4E-157		0.470376	[0.44-0.5] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186459926	186459927	rs710446	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F11	5,337 Icelandic ancestry individuals	NA	3q27.3		rs710446-C	0.3806	5E-171		0.41765	[0.39-0.45] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186459926	186459927	rs710446	28053049	Sennblad B	2017-02-01	Hum Mol Genet	Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels.	Factor XI	16,169 European ancestry individuals	2,045 European ancestry individuals	3q27.3	KNG1	rs710446-?	NR	2E-302		0.0888	unit decrease	Affymetrix, Illumina [7353638] (imputed)	N
2007	chr3	186459926	186459927	rs710446	26908601	Hinds DA	2016-02-09	Hum Mol Genet	Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis.	Thrombosis	6,135 European ancestry cases, 252,827 European ancestry controls	NA	3q27.3	KNG1	rs710446-?	NR	2E-6		0.089	[NR] unit decrease	Illumina [at least 560000] (imputed)	N
2007	chr3	186459926	186459927	rs710446	22703881	Tang W	2012-06-14	Am J Hum Genet	Genetic associations for activated partial thromboplastin time and prothrombin time, their gene expression profiles, and risk of coronary artery disease.	Activated partial thromboplastin time	9,240 European ancestry individuals	2611 European ancestry individuals	3q27.3	RFC4, ADIPOQ, KNG1	rs710446-C	NR	2E-203		1.18	[1.10-1.26] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
2007	chr3	186459926	186459927	rs710446	20303064	Houlihan LM	2010-03-18	Am J Hum Genet	Common variants of large effect in F12, KNG1, and HRG are associated with activated partial thromboplastin time.	Activated partial thromboplastin time	1,431 European ancestry individuals	NA	3q27.3	KNG1	rs710446-G	0.40	1E-21		0.36	[0.29-0.43] unit decrease	Illumina [542050]	N
2007	chr3	186460109	186460110	rs5030087	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CAPN1;CAPNS1	5,358 Icelandic ancestry individuals	NA	3q27.3		rs5030087-C	0.0274	6E-27		0.576378	[0.47-0.68] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186464106	186464107	rs6796803	29884837	Reyes-Gibby CC	2018-06-08	Sci Rep	Genome-wide association study identifies genes associated with neuropathy in patients with head and neck cancer.	Neuropathic pain in head and neck cancer	130 European ancestry cases, 913 European ancestry controls	NA	3q27.3	KNG1	rs6796803-?	0.72	6E-9		1.9607843	[1.56-2.44]	Illumina [714494]	N
2007	chr3	186466251	186466252	rs1656966	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q27.3	intergenic	rs1656966-?	0.137	4E-21			[NR]	Affymetrix, Illumina [152234]	N
2007	chr3	186472815	186472816	rs1846899	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	RP11-573D15.8, PSMD10P2	rs1846899-T	0.125	4E-12	(EA, Histidine-rich glycoprotein)	0.4591	[0.33-0.59] unit increase	Affymetrix [509946]	N
2007	chr3	186473703	186473704	rs115329695	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein NCK1	5,359 Icelandic ancestry individuals	NA	3q27.3		rs115329695-G	0.0213	2E-17		0.541229	[0.42-0.67] unit decrease	Illumina [7506463] (imputed)	N
2007	chr3	186475269	186475270	rs115613078	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein F11	5,337 Icelandic ancestry individuals	NA	3q27.3		rs115613078-C	0.0213	2E-40		0.687424	[0.59-0.79] unit increase	Illumina [7506463] (imputed)	N
2007	chr3	186480205	186480206	rs822354	21700879	Qi L	2011-06-23	Diabetes	Novel locus FER is associated with serum HMW adiponectin levels.	Adiponectin levels	1,591 European ancestry female individuals	626 European ancestry individuals from 235 families	3q27.3	ADIPOQ	rs822354-A	0.68	4E-8				Affymetrix [2543887] (imputed)	N
2007	chr3	186501647	186501648	rs266719	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	3q27.3	ADIPOQ	rs266719-T	0.096	7E-7	(Conditioned on rs10937273)	0.13	[0.071-0.189] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2007	chr3	186507128	186507129	rs140225704	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Ischemic stroke in diabetes mellitus	153 Korean ancestry cases, 5,161 Korean ancestry controls	NA	3q27.3		rs140225704-G	0.0104	4E-6		4.606	[2.404-8.826]	Affymetrix [7975321] (imputed)	N
2008	chr3	186530483	186530484	rs266717	20011104	Richards JB	2009-12-05	PLoS Genet	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	3q27.3	ADIPOQ	rs266717-C	0.48	9E-19		1.07	[NR] ug/ml increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
2008	chr3	186548564	186548565	rs6810075	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals, 4,232 African American individuals, 1,776 Filipino ancestry individuals	NA	3q27.3	ADIPOQ	rs6810075-T	0.93	2E-42		0.06	[0.052-0.068] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2008	chr3	186549694	186549695	rs10937273	24105470	Wu Y	2013-10-14	Hum Mol Genet	A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.	Adiponectin levels	7,827 East Asian ancestry individuals	10,252 East Asian ancestry individuals	3q27.3	ADIPOQ	rs10937273-A	0.404	2E-22		0.12	[0.10-0.14] unit increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2008	chr3	186551681	186551682	rs4632532	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs4632532-C	0.4	2E-17		0.13	[0.1-0.16] unit decrease	Illumina [16607452] (imputed)	N
2008	chr3	186551710	186551711	rs1648707	20011104	Richards JB	2009-12-05	PLoS Genet	A genome-wide association study reveals variants in ARL15 that influence adiponectin levels.	Adiponectin levels	8,531 European ancestry individuals	6,202 European ancestry individuals	3q27.3	ADIPOQ	rs1648707-C	0.07	3E-12		0.94	[NR] ug/ml increase	Affymetrix, Illumina [~ 2200000] (imputed)	N
2008	chr3	186551887	186551888	rs143257534	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein ADIPOQ	5,364 Icelandic ancestry individuals	NA	3q27.3		rs143257534-T	0.02988	3E-22		0.504891	[0.4-0.61] unit decrease	Illumina [7506463] (imputed)	N
2008	chr3	186551887	186551888	rs143257534	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs143257534-C	0.9740625	3E-9	(AHSG, 10966_1_3)	0.46901342	[0.31-0.62] unit decrease	Illumina [> 1000000] (imputed)	N
2008	chr3	186551887	186551888	rs143257534	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	NR	rs143257534-C	0.9740625	3E-9	(ADIPOQ, 3554_24_1)	0.4248413	[0.28-0.57] unit increase	Illumina [> 1000000] (imputed)	N
2008	chr3	186552469	186552473	rs199938283	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs199938283-C	0.02	8E-55		0.653	[0.57-0.74] unit decrease	Illumina [16607452] (imputed)	N
2008	chr3	186554291	186554292	rs864265	20876611	Wu Y	2010-09-27	Hum Mol Genet	Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ.	Adiponectin levels	1,776 Filipino ancestry female individuals	1,774 Filipino ancestry offspring	3q27.3	ADIPOQ	rs864265-G	0.88	1E-19		0.13	[0.10-0.16] unit increase	Affymetrix [2073674] (imputed)	N
2008	chr3	186556036	186556037	rs822387	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	3q27.3	NR	rs822387-?		8E-6	(ADIPOQ)	0.161	[NR] unit increase	Illumina [NR]	N
2008	chr3	186556036	186556037	rs822387	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels (BMI-adjusted)	737 European ancestry females	NA	3q27.3	ADIPOQ	rs822387-?	NR	4E-7				Illumina [up to 550000]	N
2008	chr3	186556036	186556037	rs822387	26299439	Li WD	2015-08-24	Sci Rep	Pathway-Based Genome-wide Association Studies Reveal That the Rac1 Pathway Is Associated with Plasma Adiponectin Levels.	Adiponectin levels	737 European ancestry females	NA	3q27.3	ADIPOQ	rs822387-?		8E-6				Illumina [up to 550000]	N
2008	chr3	186559459	186559460	rs17300539	28317342	Hivert MF	2017-03-20	Obesity (Silver Spring)	Genetic determinants of adiponectin regulation revealed by pregnancy.	Adiponectin levels in pregnancy	1,322 European ancestry individuals	522 European ancestry individuals, 174 French Canadian founder individuals	3q27.3	ADIPOQ	rs17300539-G	0.92	9E-6	(adjusted for BMI, height & mean arterial pressure)	0.26	[0.15-0.37] unit decrease	Illumina [NR]	N
2008	chr3	186560781	186560782	rs182052	22479202	Dastani Z	2012-03-29	PLoS Genet	Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals.	Adiponectin levels	29,347 European ancestry individuals	10,536 European ancestry individuals	3q27.3	ADIPOQ	rs182052-G	NR	5E-44		0.062	[NR] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2008	chr3	186563113	186563114	rs16861209	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs16861209-A	0.08	2E-22		0.435	[0.35-0.52] unit increase	Illumina [16607452] (imputed)	N
2008	chr3	186570452	186570453	rs17366568	31178129	Spracklen CN	2019-06-06	Am J Hum Genet	Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.	Adiponectin levels	up to 60,465 European ancestry individuals, up to 2,568 East Asian ancestry individuals, up to 3,271 African American individuals, up to 1,435 Hispanic individuals	NA	3q27.3	ADIPOQ-AS1	rs17366568-A	0.117590550622241	5E-149		0.22428516	unit decrease	Illumina [265780]	N
2008	chr3	186570452	186570453	rs17366568	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q27.3	NR	rs17366568-?	NR	6E-7	(EA, Adiponectin)	0.2953	NR unit decrease	Affymetrix [509946]	N
2008	chr3	186570452	186570453	rs17366568	20018283	Heid IM	2009-12-02	Atherosclerosis	Clear detection of ADIPOQ locus as the major gene for plasma adiponectin: results of genome-wide association analyses including 4659 European individuals.	Adiponectin levels	4,659 European ancestry individuals	13,795 European ancestry individuals	3q27.3	ADIPOQ	rs17366568-G	0.89	1E-41		0.13	[NR] log(ug/ml) increase	Affymetrix, Illumina [2585854] (imputed)	N
2008	chr3	186570745	186570746	rs17846866	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs17846866-G	0.07	5E-45		0.373	[0.32-0.42] unit decrease	Illumina [16607452] (imputed)	N
2008	chr3	186570815	186570816	rs17366653	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs17366653-C	0.02	2E-7	(conditional)	0.983	[0.61-1.36] unit decrease	Illumina [16607452] (imputed)	N
2008	chr3	186573704	186573705	rs6773957	19165155	Ling H	2009-01-22	Obesity (Silver Spring)	Genome-wide linkage and association analyses to identify genes influencing adiponectin levels: the GEMS Study.	Adiponectin levels	997 European ancestry cases, 989 European ancestry controls	NA	3q27.3	ADIPOQ	rs6773957-A	0.37	5E-8				Affymetrix [398625]	N
2008	chr3	186603786	186603787	rs77085425	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900066755 sp900066755 abundance in stool	5,959 Finnish ancestry individuals	NA	3q27.3		rs77085425-C	0.0236274	4E-8		0.139464	[0.09-0.189] unit increase	Illumina [7980478] (imputed)	N
2008	chr3	186603786	186603787	rs77085425	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	GCA-900066755 abundance in stool	5,959 Finnish ancestry individuals	NA	3q27.3		rs77085425-C	0.0236274	1E-8		0.165235	[0.11-0.22] unit increase	Illumina [7980478] (imputed)	N
2008	chr3	186629143	186629144	rs7612124	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q27.3		rs7612124-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2008	chr3	186630006	186630007	rs6767800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.3	NR	rs6767800-T	0.744523	9E-16				Affymetrix, Illumina [19872809] (imputed)	N
2008	chr3	186630006	186630007	rs6767800	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q27.3	NR	rs6767800-T	0.775485	2E-16		0.01966	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2008	chr3	186634566	186634566	rs78603540	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q27.3		rs78603540-ATAT	0.775561	4E-13		0.019240052	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2008	chr3	186634570	186634570	rs34823016	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q27.3		rs34823016-ATAT	NR	7E-9		0.0111	[0.0074-0.0148] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2008	chr3	186638218	186638219	rs6801612	30557369	Yodsurang V	2018-12-17	PLoS One	Genome-wide association study (GWAS) of ovarian cancer in Japanese predicted regulatory variants in 22q13.1.	Ovarian cancer	681 Japanese ancestry cases, 17,492 Japanese ancestry controls	NA	3q27.3	RPL29P9	rs6801612-A	0.683	8E-6		1.328	[1.174-1.503]	Illumina [7521072] (imputed)	N
2009	chr3	186647762	186647763	rs28366036	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q27.3	AC007690.1, ST6GAL1	rs28366036-C	0.344852	1E-13		0.017186424	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2009	chr3	186649102	186649103	rs1981767	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q27.3		rs1981767-A	NR	3E-12		0.0168	[0.012-0.022] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2009	chr3	186649102	186649103	rs1981767	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	3q27.3	NR	rs1981767-A	NR	1E-13		0.0203	[0.015-0.026] unit increase	Affymetrix [9000000] (imputed)	N
2009	chr3	186649931	186649932	rs11332772	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q27.3	ST6GAL1	rs11332772-C	0.557	1E-10		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
2009	chr3	186650789	186650790	rs10937275	19483685	Daly AK	2009-05-31	Nat Genet	HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.	Drug-induced liver injury (flucloxacillin)	58 European ancestry cases, 282 European ancestry controls	NA	3q27.3	ST6GAL1	rs10937275-?	0.09	1E-8	(B*5701 positive)	4.1	[NR]	Illumina [866399]	N
2009	chr3	186656534	186656535	rs3864105	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MINPP1	5,353 Icelandic ancestry individuals	NA	3q27.3		rs3864105-A	0.4412	2E-46		0.250109	[0.22-0.28] unit increase	Illumina [7506463] (imputed)	N
2009	chr3	186656601	186656602	rs3864106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q27.3	ST6GAL1	rs3864106-C	0.58581	7E-29		0.02538538	[0.021-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2009	chr3	186656601	186656602	rs3864106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q27.3	ST6GAL1	rs3864106-C	0.585725	6E-13		0.016266339	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2009	chr3	186656601	186656602	rs3864106	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q27.3	ST6GAL1	rs3864106-C	0.585739	2E-12		0.015871542	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2009	chr3	186656601	186656602	rs3864106	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q27.3	ST6GAL1	rs3864106-C	0.591	7E-37	(Multiple inositol polyphosphate phosphatase 1, MINPP1.5586.66.3)	0.31	[0.27-0.35] unit decrease	Affymetrix [10572788] (imputed)	N
2009	chr3	186665014	186665015	rs16861319	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q27.3		rs16861319-G	NR	3E-8		0.0224	[0.015-0.03] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q27.3		rs3887925-T	NR	3E-17		0.053	[0.041-0.065] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q27.3		rs3887925-T	NR	1E-11		0.0514	[0.037-0.066] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q27.3	NR	rs3887925-C	0.4548	7E-20		0.0424	[0.033-0.051] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q27.3	NR	rs3887925-C	0.4984	1E-25		0.0401	[0.033-0.048] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	3q27.3		rs3887925-T	0.422257612	4E-8		1.0467451	[1.029827168-1.063940797]	Illumina [8919992] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	3q27.3	ST6GAL1	rs3887925-T	0.43	3E-7		1.05	1.03-1.06	Illumina [12557761] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3q27.3		rs3887925-?	NR	2E-9				NR [~ 8900000] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.3	ST6GAL1	rs3887925-T	0.5468	3E-22		1.07	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2009	chr3	186665644	186665645	rs3887925	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q27.3	ST6GAL1	rs3887925-C	0.446828440266774	2E-9		0.0474	[0.032-0.063] unit decrease	NR [5035015] (imputed)	N
2009	chr3	186666460	186666461	rs16861329	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3q27.3	ST64GAL1	rs16861329-C	0.85	9E-6		1.03	[0.96-1.10]	Affymetrix, Illumina [2500000] (imputed)	N
2009	chr3	186666460	186666461	rs16861329	21874001	Kooner JS	2011-08-28	Nat Genet	Genome-wide association study in individuals of South Asian ancestry identifies six new type 2 diabetes susceptibility loci.	Type 2 diabetes	5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls	13,170 South Asian ancestry cases, 25,398 South Asian ancestry controls	3q27.3	ST6GAL1	rs16861329-G	0.75	3E-8		1.09	[1.06-1.12]	Illumina [568976]	N
2009	chr3	186675276	186675277	rs7645517	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.3	ST6GAL1	rs7645517-A	0.0576	3E-8		1.08	[1.05-1.11]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2009	chr3	186684363	186684364	rs6778436	21130132	Mick E	2010-12-01	Prog Neuropsychopharmacol Biol Psychiatry	Genome-wide association study of blood pressure response to methylphenidate treatment of attention-deficit/hyperactivity disorder.	Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)	140 child cases	NA	3q27.3	ST6GAL1	rs6778436-A	0.007	5E-6				Affymetrix [316934]	N
2009	chr3	186698514	186698514	rs544246326	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ST6GAL1	rs544246326-?	NR	8E-9	(female)	0.527082	[NR] unit increase	Affymetrix [NR] (imputed)	N
2009	chr3	186701594	186701595	rs73187787	32915782	Spracklen CN	2020-09-11	PLoS Genet	Adiponectin GWAS loci harboring extensive allelic heterogeneity exhibit distinct molecular consequences.	Adiponectin levels (BMI-adjusted)	9,262 European ancestry individuals	NA	3q27.3		rs73187787-T	0.09	2E-10		0.126	[0.087-0.165] unit increase	Illumina [16607452] (imputed)	N
2009	chr3	186713288	186713289	rs62292620	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs62292620-G	0.2798	8E-11	(IgG1_G2S1/IgG1_G2)	0.2858	[0.2-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186713288	186713289	rs62292620	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs62292620-G	0.2798	8E-11	(IgG1 G2S1/(G2+G2S1))	0.2858	[0.2-0.37] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186722848	186722848	rs59111563	31163085	Sharapov SZ	2019-06-15	Hum Mol Genet	Defining the genetic control of human blood plasma N-glycome using genome-wide association study.	N-glycan levels	2,763 individuals	327 Arab, South Asian and Filipino ancestry individuals, 294 European ancestry individuals, 591 individuals.	3q27.3	ST6GAL1	rs59111563-?	0.736	1E-26	(plasma glycan peak 41)	0.3396	[0.28-0.4] unit increase	Illumina [8557543] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176986749442711	7E-17	(IGP35)	0.3659	[0.28-0.45] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176843186191537	9E-15	(IGP32)	0.3392	[0.25-0.42] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.17684106013363	3E-40	(IGP29)	0.5797	[0.49-0.67] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176834709131403	4E-16	(IGP24)	0.3532	[0.27-0.44] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176770524297815	5E-8	(IGP38)	0.2399	[0.15-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176763000890472	5E-19	(IGP15)	0.3911	[0.31-0.48] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176763000890472	4E-7	(IGP31)	0.2226	[0.14-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176702207496653	5E-8	(IGP37)	0.2394	[0.15-0.33] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186722943	186722944	rs7652995	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs7652995-G	0.176683507130125	2E-20	(IGP28)	0.4042	[0.32-0.49] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.2934	9E-30	(IgG1 SA per Gal)	0.452	[0.37-0.53] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.2934	8E-60	(IgG2 SA per Gal)	0.6762	[0.59-0.76] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	9E-63	(IgG1 FG1S1/(FG1+FG1S1))	0.698	[0.62-0.78] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	9E-48	(IgG2_G1FS1)	0.5881	[0.51-0.67] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	8E-44	(IgG1_G1FS1)	0.5748	[0.49-0.66] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	8E-34	(IgG4_G1FS1)	0.4918	[0.41-0.57] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	4E-59	(IgG2 FG2S1/(FG2+FG2S1))	0.6716	[0.59-0.75] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	3E-59	(IgG2_G2FS1/IgG2_G2F)	0.6717	[0.59-0.75] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	2E-39	(IgG1_G2FS1/IgG1_G2F)	0.5325	[0.45-0.61] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	2E-39	(IgG1 FG2S1/(FG2+FG2S1))	0.5323	[0.45-0.61] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	1E-62	(IgG1_G1FS1/IgG1_G1F)	0.6986	[0.62-0.78] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	1E-51	(IgG4_G1FS1/IgG4_G1F)	0.6152	[0.54-0.69] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186723974	186723975	rs6764279	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs6764279-A	0.293	1E-51	(IgG4 FG1S1/(FG1+FG1S1))	0.6151	[0.54-0.69] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2944	8E-16	(IgG2 Sialylation)	0.3211	[0.24-0.4] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	9E-17	(IgG2 FGS1/(F+FG+FGS1))	0.3321	[0.25-0.41] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	7E-73	(IgG2 FG1S1/(FG1+FG1S1))	0.7558	[0.67-0.84] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	6E-73	(IgG2_G1FS1/IgG2_G1F)	0.7558	[0.67-0.84] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	5E-45	(IgG4_G2FS1/IgG4_G2F)	0.576	[0.5-0.66] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	5E-45	(IgG4 FG2S1/(FG2+FG2S1))	0.576	[0.5-0.66] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	2E-24	(IgG4 FGS1/(FG+FGS1))	0.4054	[0.33-0.48] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	2E-19	(IgG1 FGS1/(FG+FGS1))	0.3586	[0.28-0.44] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	1E-8	(IgG1 FGS1/(F+FG+FGS1))	0.2236	[0.15-0.3] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2939	1E-46	(IgG2 FGS1/(FG+FGS1))	0.5886	[0.51-0.67] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	29535710	Wahl A	2018-02-26	Front Immunol	Genome-Wide Association Study on Immunoglobulin G Glycosylation Patterns.	IgG glycosylation patterns	1,823 European ancestry individuals	1,836 European ancestry individuals	3q27.3	NR	rs11710456-A	0.2936	2E-39	(IgG4 SA per Gal)	0.5365	[0.46-0.62] unit decrease	Affymetrix [up to 18185628] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG sialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	2E-51				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monosialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	7E-42				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG monogalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	3E-69				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG galactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	2E-90				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG fucosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	1E-88				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG disialylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	2E-13				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG digalactosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	5E-79				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG bisecting N-acetyl glucosamine phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	2E-24				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	28878392	Shen X	2017-09-06	Nat Commun	Multivariate discovery and replication of five novel loci associated with Immunoglobulin G N-glycosylation.	IgG N-glycosylation phenotypes (multivariate analysis)	1,960 Orcadian (founder/genetic isolate) individuals	NA	3q27.3	ST6GAL1	rs11710456-A	0.29	6E-87				Illumina [NR]	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699626190283401	5E-6	(IGP12)	0.1589	[0.09-0.227] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699319077951002	3E-37	(IGP32)	0.4479	[0.38-0.52] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699317446770601	6E-75	(IGP29)	0.6427	[0.57-0.71] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699243829246545	5E-44	(IGP35)	0.4893	[0.42-0.56] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699064071907101	6E-11	(IGP23)	0.2297	[0.16-0.3] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699014551202137	6E-17	(IGP31)	0.2934	[0.22-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.699014551202137	2E-45	(IGP15)	0.4981	[0.43-0.57] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.69898246345811	9E-37	(IGP28)	0.4436	[0.37-0.51] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698919993324432	9E-7	(IGP14)	0.1715	[0.1-0.24] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698919993324432	5E-6	(IGP47)	0.1609	[0.092-0.23] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698919993324432	1E-8	(IGP17)	0.1999	[0.13-0.27] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698889241071429	2E-6	(IGP36)	0.1678	[0.099-0.237] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698883767483296	4E-31	(IGP24)	0.4048	[0.34-0.47] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698844000445832	3E-6	(IGP30)	0.164	[0.095-0.233] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698840198840838	5E-17	(IGP38)	0.2948	[0.23-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698797577867024	8E-17	(IGP37)	0.2929	[0.22-0.36] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698789225734639	9E-7	(IGP22)	0.1723	[0.1-0.24] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.698789225734639	2E-13	(IGP26)	0.2563	[0.19-0.32] unit increase	Illumina [~ 2500000] (imputed)	N
2009	chr3	186725886	186725887	rs11710456	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	1,848 European ancestry individuals	NA	3q27.3	ST6GAL1	rs11710456-G	0.6936	8E-7	(IgG1G2)	0.044	[0.027-0.061] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186727169	186727170	rs7621161	32128391	Klaric L	2020-02-19	Sci Adv	Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.	IgG N-glycosylation phenotypes (multivariate analysis)	8,090 European ancestry individuals	2,388 European ancestry individuals	3q27.3	ST6GAL1	rs7621161-A	0.284	5E-276		0.653	[NR] unit decrease	Illumina [up to 741151] (imputed)	N
2009	chr3	186732678	186732679	rs17776120	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	NR	rs17776120-C	0.637453049482681	2E-6	(IGP12)	0.1649	[0.097-0.233] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186732678	186732679	rs17776120	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	NR	rs17776120-C	0.636448318202047	2E-6	(IGP54)	0.1654	[0.097-0.234] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186732724	186732725	rs3821819	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	3q27.3	NR	rs3821819-G	0.632029343569203	3E-6	(IGP13)	0.1633	[0.095-0.231] unit decrease	Illumina [~ 2500000] (imputed)	N
2009	chr3	186732954	186732955	rs16861499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	3q27.3		rs16861499-A	NR	4E-10		0.0291	[0.02-0.038] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
2009	chr3	186734465	186734466	rs967367	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Albumin-globulin ratio	98,626 Japanese ancestry individuals	NA	3q27.3	ST6GAL1	rs967367-?	NR	4E-9		0.02685	[0.018-0.036] unit increase novel	Illumina [6108953] (imputed)	N
2009	chr3	186735689	186735690	rs5001409	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q27.3		rs5001409-C	NR	1E-23		0.0213	[0.017-0.025] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
2009	chr3	186735689	186735690	rs5001409	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Non-albumin protein levels	98,538 Japanese ancestry individuals	NA	3q27.3	ST6GAL1	rs5001409-?	NR	8E-11		0.02951	[0.021-0.038] unit decrease novel	Illumina [6108953] (imputed)	N
2009	chr3	186738420	186738421	rs7634389	26028593	Li M	2015-06-01	Nat Commun	Identification of new susceptibility loci for IgA nephropathy in Han Chinese.	IgA nephropathy	1,434 Han Chinese ancestry cases, 10,661 Han Chinese ancestry controls	6,879 Han Chinese ancestry cases, 9,019 Han Chinese ancestry controls	3q27.3	ST6GAL1	rs7634389-C	0.435	7E-10		1.132	[1.088-1.178]	Illumina [3792949] (imputed)	N
2009	chr3	186739676	186739677	rs4686837	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FAM163B	5,359 Icelandic ancestry individuals	NA	3q27.3		rs4686837-A	0.3047	2E-41		0.263051	[0.22-0.3] unit decrease	Illumina [7506463] (imputed)	N
2009	chr3	186739676	186739677	rs4686837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q27.3	NR	rs4686837-A	NR	6E-12		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2009	chr3	186739676	186739677	rs4686837	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q27.3	NR	rs4686837-A	NR	6E-24		0.027	[0.022-0.032] unit decrease	Affymetrix [9000000] (imputed)	N
2009	chr3	186741510	186741511	rs4012172	30929638	Matana A	2019-03-30	Thyroid	Genetic variants in the ST6GAL1 gene are associated with thyroglobulin plasma level in healthy individuals.	Thyroglobulin plasma levels	1,094 Croatian ancestry individuals	NA	3q27.3	ST6GAL1	rs4012172-C	0.65	1E-10		0.3	[0.2-0.4] unit increase	Illumina [7597379] (imputed)	N
2009	chr3	186754956	186754957	rs3936289	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	3q27.3	ST6GAL1	rs3936289-?		5E-7		3.34	[2.09-4.59] unit increase	Illumina [5908215] (imputed)	N
2009	chr3	186758582	186758583	rs4234598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q27.3	NR	rs4234598-A	NR	7E-11		0.0217	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2009	chr3	186758582	186758583	rs4234598	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q27.3	NR	rs4234598-A	NR	3E-12		0.0232	[0.017-0.03] unit increase	Affymetrix [9000000] (imputed)	N
2010	chr3	186793241	186793242	rs2239612	22960999	Wu C	2012-09-09	Nat Genet	Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.	Esophageal cancer (squamous cell)	2,031 Han Chinese ancestry cases, 2,044 Han Chinese ancestry controls	8,092 Chinese ancestry cases, 8,620 Chinese ancestry controls	3q27.3	ST6GAL1	rs2239612-T	0.19	6E-14		1.21	[1.15-1.27]	NR [NR]	N
2010	chr3	186839214	186839215	rs16861629	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q27.3	NR	rs16861629-?	NR	6E-8				Affymetrix [NR]	N
2010	chr3	186852177	186852178	rs73189770	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Chronic lymphocytic leukemia	764 White British ancestry cases, 272,079 White British ancestry controls	NA	3q27.3		rs73189770-?	NR	6E-6		1.85673	[1.59-2.12]	NR [663083]	N
2010	chr3	186891223	186891224	rs9818818	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	3q27.3	RPL39L	rs9818818-A	0.9938	3E-6		0.4195	[0.24-0.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2011	chr3	186937036	186937037	rs3864095	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	3q27.3	MASP1	rs3864095-A	0.2979	8E-7		5.72		Affymetrix [757439]	N
2011	chr3	186937199	186937200	rs3852053	24529757	Xie T	2014-01-17	Neurobiol Aging	Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.	Amyotrophic lateral sclerosis (sporadic)	250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls	NA	3q27.3	MASP1	rs3852053-?		2E-7				Illumina [859311]	N
2011	chr3	186953320	186953321	rs67143992	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CFD	5,341 Icelandic ancestry individuals	NA	3q27.3		rs67143992-T	0.1978	7E-15		0.160474	[0.12-0.2] unit increase	Illumina [7506463] (imputed)	N
2011	chr3	186954988	186954989	rs140155368	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SUN5	5,365 Icelandic ancestry individuals	NA	3q27.3		rs140155368-G	0.01229	3E-13		0.620799	[0.45-0.79] unit increase	Illumina [7506463] (imputed)	N
2011	chr3	186959294	186959295	rs28945068	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MASP1	5,365 Icelandic ancestry individuals	NA	3q27.3		rs28945068-T	0.02413	4E-127		1.38793	[1.27-1.5] unit decrease	Illumina [7506463] (imputed)	N
2011	chr3	186959294	186959295	rs28945068	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q27.3	MASP1	rs28945068-C	0.98265625	6E-43	(MASP1, 8091_16_3)	1.2875893	[1.11-1.47] unit increase	Illumina [> 1000000] (imputed)	N
2011	chr3	186965720	186965721	rs698091	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q27.3	NR	rs698091-T	0.01045	5E-9	(ACLY)	0.3007	NR unit increase	Illumina [1671387] (imputed)	N
2011	chr3	186968661	186968662	rs76119105	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q27.3	NR	rs76119105-G	0.0122	1E-8	(HAO1)	1.1	NR unit increase	Illumina [1671387] (imputed)	N
2011	chr3	187016876	187016877	rs62292788	32528159	Choquet H	2020-06-11	Commun Biol	A multiethnic genome-wide analysis of 44,039 individuals identifies 41 new loci associated with central corneal thickness.	Central corneal thickness	32,292 European ancestry individuals, 9,623 East Asian ancestry individuals, 1,367 Hispanic/Latino individuals, 757 African American  individuals	NA	3q27.3	LOC101929130	rs62292788-?	NA	3E-10		1.56	[1.07-2.05] unit increase	Affymetrix [5541230] (imputed)	N
2011	chr3	187018652	187018653	rs9850864	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta minimum area	35,110 individuals	NA	3q27.3		rs9850864-A	0.844436	5E-10		0.0581272	[0.039-0.077] decrease	Affymetrix [NR]	N
2011	chr3	187018652	187018653	rs9850864	34968759	Benjamins JW	2021-12-27	EBioMedicine	Genomic insights in ascending aortic size and distensibility.	Ascending aorta maximum area	31,908 individuals	NA	3q27.3		rs9850864-A	0.844363	2E-10		0.065161	[0.045-0.085] decrease	Affymetrix [NR]	N
2011	chr3	187023124	187023125	rs115761555	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (attentional)	21,876 European ancestry individuals	NA	3q27.3	MASP1, RTP4	rs115761555-G	0.0192	1E-6		0.216	[0.304-0.129] unit decrease	Illumina [11455070] (imputed)	N
2012	chr3	187051012	187051013	rs781661531	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	3q27.3		rs781661531-T	0.9997	8E-11		0.10503097	[0.053204755-0.207340587]	Affymetrix, Illumina [NR] (imputed)	N
2012	chr3	187089296	187089297	rs9028	30120429	Schlauch KA	2018-08-17	Int J Obes (Lond)	Single-nucleotide polymorphisms in a cohort of significantly obese women without cardiometabolic diseases.	Obesity without metabolic disease	38 European ancestry cases, 32 European ancestry non-obese controls	NA	3q27.3		rs9028-?	NR	3E-7		5.048128		Affymetrix [710007]	N
2012	chr3	187100085	187100086	rs73059848	33209044	Ahn Y	2020-11-12	Diabetes Metab Syndr Obes	Identification of Genetic Variants for Female Obesity and Evaluation of the Causal Role of Genetically Defined Obesity in Polycystic Ovarian Syndrome.	Waist-hip ratio	4,658 Korean ancestry females	5,295 Korean ancestry females	3q27.3	NR	rs73059848-T	0.02	2E-7		0.024	[0.014-0.034] unit decrease	Affymetrix [NR] (imputed)	N
2014	chr3	187319123	187319124	rs6788371	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3q27.3	SST	rs6788371-G	0.372	4E-6	(EA)			Illumina [4404269] (imputed)	N
2014	chr3	187349008	187349009	rs1452201	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	3q27.3		rs1452201-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2014	chr3	187398935	187398936	rs79592764	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	3q27.3	RTP2, SST	rs79592764-T	NR	4E-7		5.23	[3.21-7.24] unit increase	Affymetrix [14000000] (imputed)	N
2014	chr3	187413990	187413991	rs6764050	22760553	Adkins DE	2012-07-03	Transl Psychiatry	Genome-wide pharmacogenomic study of citalopram-induced side effects in STAR*D.	Response to citalopram treatment	1,392 European ancestry depression cases, 264 African American depression cases, 106 depression cases	NA	3q27.3	RPT2	rs6764050-G	0.023	9E-7	(EA + AA - GSE)			Affymetrix [421789]	N
2014	chr3	187416633	187416634	rs1973791	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3q27.3	RTP2	rs1973791-A	0.616779	8E-15		0.017805202	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2014	chr3	187423635	187423636	rs73184639	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3q27.3	NR	rs73184639-?		5E-8	(Anterior limb of internal capsule)			NR [8955960] (imputed)	N
2014	chr3	187424292	187424293	rs79263607	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.3	RP11-211G3.3	rs79263607-T	NR	7E-9		0.0442449	[0.029-0.059] unit increase	Affymetrix [321016] (imputed)	N
2014	chr3	187424333	187424334	rs6780544	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3q27.3	NR	rs6780544-A	0.62255	9E-15		0.016363	[0.012-0.02] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
2014	chr3	187426337	187426338	rs73184642	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	3q27.3	NR	rs73184642-A	0.8065	8E-6		0.1847	[0.1-0.27] unit increase	Illumina [NR] (imputed)	N
2014	chr3	187429456	187429457	rs10937319	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q27.3		rs10937319-?	NR	1E-10				NR [~ 8900000] (imputed)	N
2015	chr3	187438521	187438522	rs4686904	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q27.3	RP11-211G3.3	rs4686904-C	0.353119	7E-12		0.015846245	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2015	chr3	187438521	187438522	rs4686904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.3	NR	rs4686904-T	0.664373	5E-12				Affymetrix, Illumina [23467995] (imputed)	N
2015	chr3	187438521	187438522	rs4686904	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q27.3	NR	rs4686904-T	0.647338	3E-14		0.014855	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2015	chr3	187441815	187441816	rs73184656	30420678	Tasa T	2018-11-12	Eur J Hum Genet	Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records.	Adverse response to drug	16,226 European ancestry individuals	NA	3q27.3	BCL6	rs73184656-C	0.2	7E-7	(Other centrally acting agents [M03BX])	2.06		Illumina [16500000] (imputed)	N
2015	chr3	187443313	187443314	rs61732778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q27.3		rs61732778-A	NR	1E-8		0.0197	[0.013-0.026] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2015	chr3	187443313	187443314	rs61732778	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q27.3		rs61732778-A	NR	5E-44		0.0373	[0.032-0.043] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2015	chr3	187443313	187443314	rs61732778	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	3q27.3	RP11-211G3.3, BCL6	rs61732778-A	NR	1E-9		0.0333038	[0.023-0.044] unit increase	Affymetrix [321016] (imputed)	N
2015	chr3	187443313	187443314	rs61732778	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q27.3	BCL6	rs61732778-A	0.071	3E-10		0.023	[0.016-0.03] unit increase	Affymetrix [18391927] (imputed)	N
2015	chr3	187443313	187443314	rs61732778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.3		rs61732778-?	NR	4E-55				NR [~ 8900000] (imputed)	N
2015	chr3	187447031	187447032	rs1056932	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q27.3	BCL6	rs1056932-?	NR	4E-16		0.03159414	[0.024-0.039] unit decrease	Illumina [27896057] (imputed)	N
2015	chr3	187447925	187447926	rs1491997	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q27.3		rs1491997-T	0.737477	2E-13		0.0179363	[0.013-0.023] unit decrease	Illumina [13479295] (imputed)	N
2015	chr3	187450127	187450128	rs4417855	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3q27.3	BCL6, RP11-211G3.3	rs4417855-T	0.3599	4E-9		0.02212151	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2015	chr3	187456593	187456594	rs3733018	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.3	NR	rs3733018-C	0.615837	5E-14				Affymetrix, Illumina [19905671] (imputed)	N
2015	chr3	187456593	187456594	rs3733018	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of white cells	171,996 European ancestry individuals	NA	3q27.3	BCL6	rs3733018-C	0.6337	7E-11		0.0237749	[0.017-0.031] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2015	chr3	187456593	187456594	rs3733018	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Basophil percentage of granulocytes	170,223 European ancestry individuals	NA	3q27.3	BCL6	rs3733018-C	0.6338	3E-12		0.02572174	[0.019-0.033] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2015	chr3	187456708	187456709	rs3733017	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	PR interval	455 African American individuals	NA	3q27.3	BCL6	rs3733017-G		6E-6		10.07	[NR] ms decrease	Illumina [> 930000]	N
2015	chr3	187459087	187459088	rs3172469	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q27.3	BCL6	rs3172469-G	0.275009	3E-15		0.019697228	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2015	chr3	187460098	187460099	rs3774298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q27.3	BCL6	rs3774298-A	0.688189	3E-10		0.015543802	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2015	chr3	187460098	187460099	rs3774298	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil percentage of white cells	408,112 British individuals	NA	3q27.3	BCL6	rs3774298-A	0.688176	9E-17		0.020647027	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2015	chr3	187486940	187486941	rs79468737	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs79468737-A	NR	4E-9		0.0575	[0.038-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
2015	chr3	187507338	187507339	rs62279150	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs62279150-A	NR	5E-12		0.0438	[0.031-0.056] unit increase	Affymetrix [9000000] (imputed)	N
2015	chr3	187535121	187535122	rs76376429	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	3q27.3	RP11-30O15.1	rs76376429-C	NR	2E-9		0.04926	[0.033-0.065] unit increase	Affymetrix [321114] (imputed)	N
2015	chr3	187536594	187536595	rs11917678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.3		rs11917678-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2015	chr3	187543341	187543342	rs10513821	23284291	Hancock DB	2012-12-20	PLoS Genet	Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.	Pulmonary function (smoking interaction)	50,047 European ancestry individuals	NA	3q27.3	RTP2, BCL6	rs10513821-A	NR	5E-7	(FEV1/FVC, Pack-years)			NR [~ 2500000] (imputed)	N
2015	chr3	187549645	187549646	rs73184699	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	3q27.3	NR	rs73184699-?	NR	8E-7		4.933	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
2016	chr3	187565967	187565968	rs2590438	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q27.3	BCL6	rs2590438-G	NR	5E-9		1.0687187	NR	Affymetrix, Illumina [8278136] (imputed)	N
2016	chr3	187597926	187597927	rs149049329	25760438	Anderson D	2015-03-11	PLoS One	First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.	Type 2 diabetes	89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls	NA	3q27.3	BCL6, LPP	rs149049329-?	NR	2E-6		0.71	[0.42-1.00] unit increase	Illumina [1075436] (imputed)	N
2016	chr3	187598396	187598397	rs487575	31263063	Dufek S	2019-07-01	J Am Soc Nephrol	Genetic Identification of Two Novel Loci Associated with Steroid-Sensitive Nephrotic Syndrome.	Childhood steroid-sensitive nephrotic syndrome	422 European ancestry cases, 5,642 European ancestry controls	NA	3q27.3	NR	rs487575-?	0.78	1E-6		1.5873016	[1.3-1.92]	Illumina [5216266] (imputed)	N
2016	chr3	187615861	187615862	rs523079	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	3q27.3	BCL6, LPP	rs523079-?		2E-7	(SG)	0.25	[0.13-0.37] unit increase	Illumina [693128]	N
2016	chr3	187628005	187628006	rs7631606	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	3q27.3		rs7631606-G	NR	4E-9		0.0156	[0.011-0.021] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
2016	chr3	187628005	187628006	rs7631606	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	3q27.3	NR	rs7631606-G	NR	3E-9		0.0162	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
2016	chr3	187628005	187628006	rs7631606	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q27.3	BCL6	rs7631606-T	0.73409	1E-9		0.0138827	[0.0094-0.0183] unit increase	Affymetrix [NR] (imputed)	N
2016	chr3	187632237	187632238	rs9810106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q27.3	NR	rs9810106-C	0.464674	1E-11		0.01254	[0.0089-0.0162] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2016	chr3	187632237	187632238	rs9810106	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q27.3	NR	rs9810106-C	0.464719	4E-12		0.012877	[0.0092-0.0165] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
2016	chr3	187632237	187632238	rs9810106	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q27.3	intergenic	rs9810106-C		2E-10		0.014	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2016	chr3	187632583	187632584	rs12629247	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	3q27.3	NA	rs12629247-C	0.0399	1E-9		0.0289	[0.02-0.038] unit increase	NR [~ 27400000] (imputed)	N
2016	chr3	187633267	187633268	rs519973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q27.3		rs519973-?	NR	2E-24				NR [~ 8900000] (imputed)	N
2016	chr3	187633267	187633268	rs519973	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q27.3	BCL6, LPP-AS2	rs519973-A	0.35	5E-10		1.034	[1.02-1.04]	Affymetrix, Illumina [8307659] (imputed)	N
2016	chr3	187636165	187636166	rs491087	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q27.3	NR	rs491087-?	NR	9E-9				Affymetrix [~ 8270000] (imputed)	N
2016	chr3	187636165	187636166	rs491087	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic rhinitis	18,915 European ancestry cases, 239,773 European ancestry controls	NA	3q27.3	LPP, BCL6	rs491087-A	0.3366	2E-8		1.068	[1.045-1.092]	Affymetrix [15688218] (imputed)	N
2016	chr3	187639374	187639375	rs763342	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q27.3	NR	rs763342-C	0.3393	4E-16		1.052	[1.04-1.064]	Affymetrix [15688218] (imputed)	N
2016	chr3	187641129	187641130	rs114558062	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q27.3	RP11-44H4.1	rs114558062-C	0.0122204	6E-10		0.2561257	[0.17-0.34] unit increase	Affymetrix [7288503] (imputed)	N
2016	chr3	187641129	187641130	rs114558062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q27.3		rs114558062-?	NR	7E-11				NR [~ 8900000] (imputed)	N
2016	chr3	187641129	187641130	rs114558062	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q27.3		rs114558062-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2016	chr3	187641416	187641417	rs9849756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q27.3		rs9849756-C	0.535332	6E-9		0.013710295	[0.0091-0.0183] unit increase	Affymetrix [93095623] (imputed)	N
2016	chr3	187641416	187641417	rs9849756	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q27.3		rs9849756-C	0.535315	2E-9		0.014223181	[0.0096-0.0188] unit increase	Affymetrix [93095623] (imputed)	N
2016	chr3	187642408	187642409	rs78859589	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q27.3		rs78859589-C	NR	8E-9		0.021	[0.014-0.028] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2016	chr3	187643345	187643346	rs2253944	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Urine pH measurement	149,899 Icelandic ancestry individuals (includes non-array genotyped, whole-genome imputed individuals)	NA	3q27.3	intergenic	rs2253944-G	0.31099	7E-9		0.02	[0.01-0.03] unit increase	Illumina [32500000] (imputed)	N
2016	chr3	187643345	187643346	rs2253944	30476138	Benonisdottir S	2019-04-01	Hum Mol Genet	Sequence variants associating with urinary biomarkers.	Low urine pH	35,897 Icelandic ancestry cases, 112,302 Icelandic ancestry controls (includes non-array genotyped, whole-genome imputed individuals)	NA	3q27.3	intergenic	rs2253944-A	0.689	4E-11		1.081081	[1.05-1.11]	Illumina [32500000] (imputed)	N
2016	chr3	187643823	187643824	rs4686908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.3	NR	rs4686908-T	0.475335	2E-10				Affymetrix, Illumina [24653286] (imputed)	N
2016	chr3	187643823	187643824	rs4686908	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q27.3	NR	rs4686908-T	0.476499	6E-11				Affymetrix, Illumina [24558453] (imputed)	N
2016	chr3	187645129	187645130	rs2679531	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q27.3	NR	rs2679531-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2016	chr3	187649418	187649419	rs6773854	23749188	Tan DE	2013-06-09	Nat Genet	Genome-wide association study of B cell non-Hodgkin lymphoma identifies 3q27 as a susceptibility locus in the Chinese population.	B cell non-Hodgkin lymphoma	253 Singaporean Chinese ancestry cases, 1,438 Singaporean Chinese ancestry controls	1,175 Han Chinese ancestry cases, 5,492 Han Chinese ancestry controls	3q27.3	BCL6, LPP	rs6773854-C	0.21	3E-13		1.44	[1.31-1.59]	Illumina [550946]	N
2016	chr3	187652723	187652724	rs16862729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q27.3		rs16862729-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2016	chr3	187652919	187652920	rs558577	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q27.3		rs558577-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2016	chr3	187653474	187653475	rs532505	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q27.3		rs532505-T	NR	2E-10		0.0128	[0.0089-0.0167] unit decrease	Affymetrix, Illumina [20535842] (imputed)	N
2016	chr3	187661501	187661502	rs4624549	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	3q27.3	NR	rs4624549-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2016	chr3	187674659	187674660	rs2590440	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	3q27.3	NR	rs2590440-G	0.21	2E-8		0.013	[0.0085-0.0175] unit increase	Affymetrix [2446094] (imputed)	N
2016	chr3	187674659	187674660	rs2590440	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	3q27.3	NR	rs2590440-G	0.21	5E-8				Affymetrix [2446094] (imputed)	N
2016	chr3	187681711	187681712	rs509399	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q27.3	LPP-AS2, LPP, FLJ42393, BCL6, LOC100131635, RTP2	rs509399-C	0.92228	2E-9		1.0749568	[1.05-1.1]	Affymetrix [32463443] (imputed)	N
2016	chr3	187681711	187681712	rs509399	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q27.3	NR	rs509399-?	NR	4E-9				Affymetrix [~ 8270000] (imputed)	N
2016	chr3	187681711	187681712	rs509399	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q27.3	NR	rs509399-C	0.92476	2E-11		1.079797	[1.06-1.1]	Affymetrix [15688218] (imputed)	N
2016	chr3	187681711	187681712	rs509399	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3q27.3	NR	rs509399-?	NR	1E-9	(conditional)			Affymetrix [15688218] (imputed)	N
2016	chr3	187681841	187681842	rs77403728	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q27.3	NR	rs77403728-C	0.037998	3E-10		0.032681	[0.022-0.043] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2016	chr3	187684309	187684310	rs2292893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	3q27.3		rs2292893-G	NR	7E-13		0.0467	[0.034-0.059] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
2016	chr3	187684309	187684310	rs2292893	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q27.3		rs2292893-G	NR	3E-9		0.0468	[0.031-0.062] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2016	chr3	187687073	187687074	rs9820070	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Hematological and biochemical traits	Up to 14,402 Japanese individuals	NA	3q27.3	intergenic	rs9820070-C	0.31	1E-11	(BUN)	0.087	[0.062-0.112] unit decrease	Illumina [561583]	N
2016	chr3	187687839	187687840	rs16862780	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urea levels	19,293 British ancestry individuals from 6863 families.	NA	3q27.3	RP11-132 N15.3	rs16862780-A	0.1574	3E-10		0.09280443	[0.064-0.122] mg/dl decrease	Illumina [24111857] (imputed)	N
2016	chr3	187687839	187687840	rs16862780	27723758	Bronson PG	2016-10-10	Nat Genet	Common variants at PVT1, ATG13-AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency.	Selective IgA deficiency	1,635 European ancestry cases, 4,852 European ancestry controls	NA	3q27.3	BCL6	rs16862780-A		3E-7		1.33	[NR]	Illumina [up to 9464381] (imputed)	N
2016	chr3	187687889	187687890	rs16862782	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs16862782-A	NR	9E-102		0.0711	[0.065-0.078] unit decrease	Affymetrix [9000000] (imputed)	N
2016	chr3	187687889	187687890	rs16862782	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q27.3	NR	rs16862782-A	NR	1E-11		0.0235	[0.017-0.03] unit decrease	Affymetrix [9000000] (imputed)	N
2016	chr3	187687889	187687890	rs16862782	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		3q27.3	intergenic	rs16862782-?	0.815	5E-7			[NR]	Affymetrix, Illumina [152234]	N
2017	chr3	187697669	187697670	rs73051566	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs73051566-T	NR	4E-14		0.0314	[0.023-0.039] unit decrease	Affymetrix [9000000] (imputed)	N
2017	chr3	187698332	187698333	rs13086331	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q27.3	BCL6-LPP	rs13086331-T	0.819	7E-9		1.05	[1.03-1.07]	Affymetrix, Illumina [11800000] (imputed)	N
2017	chr3	187704637	187704638	rs11713391	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	3q27.3		rs11713391-A	0.142673351	2E-8		0.07887639	[0.051-0.106] unit decrease	Illumina [13134967] (imputed)	N
2017	chr3	187705886	187705887	rs184662298	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Symmetrical dimethylarginine levels	5110 European ancestry individuals	NA	3q27.3	NR	rs184662298-G	0.996	2E-6		1.431	[0.85-2.02] unit decrease	Affymetrix, Illumina [10085758] (imputed)	N
2017	chr3	187705886	187705887	rs184662298	24159190	Seppala I	2013-10-24	Eur Heart J	Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.	Serum dimethylarginine levels (asymmetric/symetric ratio)	5110 European ancestry individuals	NA	3q27.3	NR	rs184662298-G	0.996	3E-6		1.385	[0.8-1.97] unit increase	Affymetrix, Illumina [10085758] (imputed)	N
2017	chr3	187707102	187707103	rs12152370	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.3		rs12152370-?	NR	2E-10				NR [~ 8900000] (imputed)	N
2017	chr3	187709116	187709117	rs9836926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs9836926-G	NR	2E-23		0.0411	[0.033-0.049] unit decrease	Affymetrix [9000000] (imputed)	N
2017	chr3	187709972	187709973	rs9859787	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Blood urea nitrogen levels	139,818 Japanese ancestry individuals	NA	3q27.3	BCL6, LPP-AS2	rs9859787-?	NR	2E-48		0.05576	[0.048-0.063] unit decrease novel	Illumina [6108953] (imputed)	N
2017	chr3	187710425	187710426	rs9860469	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	148,767 East Asian ancestry individuals	NA	3q27.3		rs9860469-G	0.312108	3E-44		0.0504717	[0.043-0.058] unit decrease	Illumina [13478792] (imputed)	N
2017	chr3	187713717	187713718	rs10937329	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Blood urea nitrogen levels	7,064 Korean ancestry individuals	6,509 Korean ancestry individuals	3q27.3	intergenic	rs10937329-?		8E-12		0.4044	[0.29-0.52] unit decrease	Affymetrix [345072]	N
2017	chr3	187713717	187713718	rs10937329	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (BUN)	39,717 East Asian ancestry individuals	17,461 East Asian ancestry individuals	3q27.3	BCL6, LPP	rs10937329-T	0.69	9E-30		0.01	[0.0082-0.0118] mg/dl increase	Affymetrix, Illumina [2281523] (imputed)	N
2017	chr3	187716885	187716886	rs1553091	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Urea levels	20,700 European ancestry individuals	NA	3q27.3	RP11-132N15.1, RP11-132N15.2	rs1553091-G	0.302371	4E-9		0.0675	[0.046-0.089] unit decrease	Illumina [24961484] (imputed)	N
2017	chr3	187716885	187716886	rs1553091	23648065	Low SK	2013-05-04	Cancer Sci	Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.	Adverse response to chemotherapy (neutropenia/leucopenia) (epirubicin)	83 Japanese ancestry cases, 370 Japanese ancestry controls	NA	3q27.3	LOC100505844	rs1553091-G	0.358	7E-6	(Recessive model)	1.48	[1.053-2.08]	Illumina [733202]	N
2017	chr3	187717539	187717540	rs4686914	30808845	Thio CHL	2019-02-26	Am J Nephrol	Genome-Wide Association Scan of Serum Urea in European Populations Identifies Two Novel Loci.	Serum urea levels	13,312 European ancestry individuals	7,379 European ancestry individuals	3q27.3	LPP	rs4686914-T	0.308	3E-17		0.107	[0.082-0.132] mmol/L decrease	Illumina [1990000] (imputed)	N
2017	chr3	187717539	187717540	rs4686914	21909109	Kim YJ	2011-09-11	Nat Genet	Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.	Metabolite levels	12,545 Korean ancestry individuals	Up to 30,395 East Asian ancestry individuals	3q27.3	intergenic	rs4686914-T	0.38	3E-21	(BUN)	0.0242	[0.019-0.029] mg/dL decrease	Affymetrix [~ 2200000] (imputed)	N
2017	chr3	187719347	187719348	rs9880162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q27.3		rs9880162-G	NR	2E-153		0.054	[0.05-0.058] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
2017	chr3	187721536	187721537	rs9290867	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q27.3	LINC01991	rs9290867-A	0.314	4E-108		0.0161	[0.015-0.017] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2017	chr3	187723335	187723336	rs9883756	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q27.3	NR	rs9883756-C	0.112732	6E-13		0.021544	[0.016-0.027] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2017	chr3	187729156	187729157	rs62278010	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q27.3		rs62278010-A	0.110813	1E-11		0.023873959	[0.017-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	3q27.3		rs6808574-C	NR	2E-14		0.0196	[0.015-0.025] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q27.3	LPP-AS2	rs6808574-T	0.3907	7E-14		0.0127	[0.0094-0.016] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Blood glucose levels	313,125 European ancestry individuals, 5,568 African ancestry individuals, 6,693 South Asian ancestry individuals	NA	3q27.3	NR	rs6808574-C	NR	1E-14		0.0197	[0.015-0.025] unit increase	Affymetrix [9000000] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	3q27.3	LOC107986166, LPP	rs6808574-T	0.390373750851738	4E-13		0.0552	[0.04-0.07] unit decrease	NR [5035015] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	3q27.3	LPP, AS2	rs6808574-C	0.6054	1E-6		0.046	[0.026-0.066] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2017	chr3	187740522	187740523	rs6808574	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	3q27.3	LPP	rs6808574-C		6E-9		1.07	[1.04-1.09]	Affymetrix, Illumina [2500000] (imputed)	N
2017	chr3	187740898	187740899	rs4686471	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	3q27.3		rs4686471-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2017	chr3	187740898	187740899	rs4686471	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	3q27.3	LPP	rs4686471-C	0.6104	2E-20		1.06	[1.05-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
2017	chr3	187741841	187741842	rs6777684	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q27.3		rs6777684-G	NR	7E-28		0.0259	[0.021-0.031] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
2017	chr3	187741841	187741842	rs6777684	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	146,806 European ancestry individuals	NA	3q27.3	LPP-AS2	rs6777684-A	0.3923	5E-6		0.0058	[0.0031-0.0085] unit decrease	Affymetrix, Illumina [33811881] (imputed)	N
2017	chr3	187741841	187741842	rs6777684	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q27.3	NR	rs6777684-G	0.6076	4E-33		0.0569	[0.048-0.066] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
2017	chr3	187741841	187741842	rs6777684	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q27.3	NR	rs6777684-G	0.6279	2E-35		0.0548	[0.046-0.063] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2017	chr3	187759861	187759862	rs11710971	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs11710971-C	NR	1E-33		0.0354	[0.03-0.041] unit increase	Affymetrix [9000000] (imputed)	N
2017	chr3	187763397	187763398	rs6789987	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue/subcutaneous adipose tissue ratio	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q27.3	LPP	rs6789987-C	0.71	3E-6	(women)			Affymetrix, Illumina [2500000] (imputed)	N
2017	chr3	187763397	187763398	rs6789987	22589738	Fox CS	2012-05-10	PLoS Genet	Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.	Visceral adipose tissue adjusted for BMI	5,560 European ancestry female individuals, 4,997 European ancestry male individuals	NA	3q27.3	LPP	rs6789987-C	0.71	9E-6	(Women)			Affymetrix, Illumina [2500000] (imputed)	N
2017	chr3	187778423	187778424	rs62279868	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urea levels	342,286 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q27.3	NR	rs62279868-A	NR	2E-20		0.0625	[0.049-0.076] unit increase	Affymetrix [9000000] (imputed)	N
2017	chr3	187779856	187779857	rs71308905	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Uveal melanoma with any chromosomal aberration	417 European ancestry cases, 5,199 European ancestry controls	NA	3q27.3		rs71308905-T	0.06	4E-6		1.74		Illumina [10258281] (imputed)	N
2017	chr3	187787645	187787646	rs12630483	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q27.3		rs12630483-G	0.142541	8E-11		0.020601632	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2017	chr3	187789707	187789708	rs13062850	32121467	Adewuyi EO	2020-02-29	Genes (Basel)	Shared Molecular Genetic Mechanisms Underlie Endometriosis and Migraine Comorbidity.	Endometriosis or migraine	17,054 European and Japanese ancestry endometriosis cases, 29,208 European ancestry migraine cases, 191,858 European and Japanese ancestry controls, 172,931 European ancestry controls	NA	3q27.3	NR	rs13062850-T	NR	7E-6	(random effect)	1.12	NR	NR [6904914] (imputed)	N
2017	chr3	187792710	187792711	rs16862964	24465431	Ma RC	2014-01-20	PLoS One	Familial young-onset diabetes, pre-diabetes and cardiovascular disease are associated with genetic variants of DACH1 in Chinese.	Type 2 diabetes (young onset) and obesity	99 Chinese ancestry cases, 101 Chinese ancestry controls	NA	3q27.3	LPP	rs16862964-G	0.262	7E-6		2.59	[1.71-3.94]	Illumina [425513]	N
2017	chr3	187793832	187793833	rs2030030	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q27.3	BCL6, LPP-AS2	rs2030030-T	0.86	1E-8		1.041	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
2017	chr3	187799699	187799700	rs9817522	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	3q27.3	RP11-430L16.1	rs9817522-C	NR	2E-8		0.0163475	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
2018	chr3	187852485	187852486	rs2046060	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital left-sided heart lesions	326 European ancestry cases, 8,486 European ancestry controls	NA	3q27.3	NR	rs2046060-?		7E-8		1.57	[1.34-1.86]	Affymetrix, Illumina [9216527] (imputed)	N
2018	chr3	187863974	187863976	rs34137646	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q27.3		rs34137646-C	NR	1E-8		0.0128	[0.0085-0.0171] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
2018	chr3	187870777	187870778	rs62289742	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q27.3		rs62289742-?	NR	3E-10				NR [~ 8900000] (imputed)	N
2018	chr3	187887576	187887577	rs16863064	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q27.3	NR	rs16863064-G	NR	9E-6		1.0638298	[NR]	Illumina [7158791] (imputed)	N
2018	chr3	187926790	187926791	rs6772342	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	3q28		rs6772342-C	NR	3E-8		0.0314	[0.02-0.043] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
2018	chr3	187944923	187944924	rs1975991	23218918	Sprooten E	2012-12-04	Psychiatry Res	White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.	White matter integrity (bipolar disorder risk interaction)	70 unaffected relatives of cases with bipolar disorder, 80 controls	NA	3q28	LPP	rs1975991-?	0.32	6E-6				Illumina [565404]	N
2018	chr3	187951891	187951892	rs1871517	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q28		rs1871517-?	NR	3E-9				Affymetrix [NR] (imputed)	N
2018	chr3	187954413	187954414	rs4459895	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Nodular sclerosis Hodgkin lymphoma	1,278 European ancestry cases, 14,325 European ancestry controls	1,586 cases, 3,069 controls	3q28	LPP	rs4459895-A	0.19	9E-17		1.39	[1.28-1.50]	Illumina [> 10000000] (imputed)	N
2018	chr3	187954413	187954414	rs4459895	29196614	Sud A	2017-12-01	Nat Commun	Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility.	Hodgkin's lymphoma	3,077 European ancestry cases, 13,680 European ancestry controls	2,237 cases, 3,069 controls	3q28	LPP	rs4459895-A	0.19	4E-18		1.3	[1.23-1.38]	Illumina [> 10000000] (imputed)	N
2018	chr3	187954413	187954414	rs4459895	28112199	Law PJ	2017-01-23	Sci Rep	Genome-wide association analysis of chronic lymphocytic leukaemia, Hodgkin lymphoma and multiple myeloma identifies pleiotropic risk loci.	B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy)	1,842 European ancestry chronic lymphocytic leukemia cases, 1,465 European ancestry Hodgkin lymphoma cases, 3,790 European ancestry multiple myeloma cases, 7,324 European ancestry controls	NA	3q28	LPP	rs4459895-C	NR	2E-7				Illumina [10806625] (imputed)	N
2019	chr3	187987623	187987624	rs13066789	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q28	LPP	rs13066789-C	NR	1E-8		1.0666	NR	Affymetrix, Illumina [8278136] (imputed)	N
2019	chr3	187987682	187987683	rs112912841	31477735	Liu X	2019-09-02	Nat Commun	Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration.	Early spontaneous preterm birth	1,139 European ancestry cases, 60,148 European ancestry controls	107 Finnish ancestry infant cases, 865 Finnish ancestry infant controls	3q28	LPP	rs112912841-G	0.061	1E-7		1.56	[1.32-1.84]	Illumina [7588467] (imputed)	N
2019	chr3	187987765	187987785	rs145495258	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	3q28		rs145495258-T	0.0876	9E-6		0.656		NR [11110260] (imputed)	N
2019	chr3	187993696	187993697	rs62291417	34834521	Hsiao YJ	2021-11-09	J Pers Med	Genome-Wide Polygenic Risk Score for Predicting High Risk Glaucoma Individuals of Han Chinese Ancestry.	Glaucoma	1,013 Han Chinese ancestry cases, 36,562 Han Chinese ancestry controls	NA	3q28		rs62291417-T	0.0876	9E-6		0.6558		NR [11110260] (imputed)	N
2019	chr3	187996570	187996571	rs115290637	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LPP	rs115290637-?	NR	3E-11	(female)	3.09284	[NR] unit increase	Affymetrix [NR] (imputed)	N
2019	chr3	187996570	187996571	rs115290637	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LPP	rs115290637-?	NR	2E-9		3.11893	[NR] unit increase	Affymetrix [NR] (imputed)	N
2019	chr3	188001013	188001014	rs80236973	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q28	LPP	rs80236973-C	0.86542	1E-9		0.0121589	[0.0082-0.0161] unit increase	Affymetrix [12370749]	N
2019	chr3	188001013	188001014	rs80236973	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q28		rs80236973-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2019	chr3	188004947	188004948	rs150062338	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	3q28	LPP	rs150062338-T	0.01	2E-7	(European)	38.6		Illumina [7993459] (imputed)	N
2019	chr3	188007688	188007689	rs74378591	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q28	LPP	rs74378591-C	0.108871	3E-8		0.081116185	[0.052-0.11] unit increase	Affymetrix [7288503] (imputed)	N
2019	chr3	188007784	188007784	rs11441027	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q28		rs11441027-GT	NR	9E-9		0.0194	[0.013-0.026] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2019	chr3	188045015	188045016	rs9852988	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q28	LPP	rs9852988-G	0.118001	3E-8		1.0546253	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
2019	chr3	188048841	188048842	rs4686952	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs4686952-?	NR	5E-15				NR [~ 8900000] (imputed)	N
2019	chr3	188055661	188055662	rs7647214	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	3q28	NR	rs7647214-C		2E-8		0.09	[0.051-0.129] unit increase	NR [NR]	N
2019	chr3	188057206	188057207	rs4420855	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	3q28	LPP	rs4420855-A	0.7	4E-8				Affymetrix, Illumina [8002429] (imputed)	N
2019	chr3	188057206	188057207	rs4420855	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	3q28	LPP	rs4420855-A	0.7	6E-7		1.1	NR	Affymetrix [at least 8002429] (imputed)	N
2019	chr3	188057206	188057207	rs4420855	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	3q28	LPP	rs4420855-A	0.7026	1E-12		0.1094	[0.079-0.139] unit increase	Affymetrix [~ 11900000] (imputed)	N
2019	chr3	188059442	188059443	rs13076750	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	3q28	LPP	rs13076750-?	NR	1E-13		0.1	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
2019	chr3	188061713	188061714	rs4132172	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	3q28	LPP	rs4132172-C	0.745	2E-10		0.093	[0.064-0.122] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2019	chr3	188066436	188066437	rs6771736	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	3q28	LPP	rs6771736-G	NR	5E-8		1.0869565	[1.05-1.12]	Affymetrix [at least 665500] (imputed)	N
2019	chr3	188066952	188066953	rs6787621	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	3q28		rs6787621-G	NR	9E-12		0.08	[0.057-0.103] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
2019	chr3	188066952	188066953	rs6787621	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	3q28	LPP	rs6787621-T	NR	6E-17		0.0685	unit decrease	Illumina [15409056] (imputed)	N
2019	chr3	188066952	188066953	rs6787621	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	3q28	LPP	rs6787621-T	NR	9E-6		0.936505	[0.91-0.97]	Affymetrix, Illumina [14822926] (imputed)	N
2019	chr3	188069329	188069330	rs1403050	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (father's age at death)	309,383 European ancestry individuals	NA	3q28	NR	rs1403050-G	NR	7E-7		0.01556	[0.0094-0.0217] unit decrease	Illumina [541614]	N
2019	chr3	188072512	188072513	rs9865818	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	3q28	LPP	rs9865818-G	0.430765093973058	3E-8		0.026	[0.017-0.035] SD decrease	Illumina [22400000] (imputed)	N
2019	chr3	188072512	188072513	rs9865818	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic sensitization	8,040 European ancestry cases, 16,441 European ancestry controls	NA	3q28	LPP	rs9865818-G	0.42	4E-9		1.14	[1.09-1.19]	Affymetrix, Illumina [16531985] (imputed)	N
2019	chr3	188072512	188072513	rs9865818	23817571	Bonnelykke K	2013-06-30	Nat Genet	Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.	Allergic sensitization	5,789 European ancestry cases, 10,056 European ancestry controls	6,114 European ancestry cases, 9,920 European ancestry controls	3q28	LPP, BCL6	rs9865818-G	0.41	3E-10		1.12	[1.09-1.16]	Affymetrix, Illumina [~ 2500000] (imputed)	N
2019	chr3	188082918	188082919	rs4686953	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q28		rs4686953-C	NR	1E-18		0.0206	[0.016-0.025] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2019	chr3	188082918	188082919	rs4686953	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	3q28		rs4686953-T	0.552	1E-19				Affymetrix [10369434] (imputed)	N
2019	chr3	188087627	188087628	rs9851967	22951725	Tang XF	2012-09-06	J Invest Dermatol	Association analyses identify three susceptibility Loci for vitiligo in the Chinese Han population.	Vitiligo	1,117 Han Chinese ancestry cases, 1,701 Han Chinese ancestry controls	5,740 Han Chinese ancestry cases, 10,324 Han Chinese ancestry controls	3q28	LPP	rs9851967-?	0.28	9E-8		1.14	[1.09-1.19]	Illumina [493909]	N
2019	chr3	188088117	188088118	rs11715549	27424798	Chahal HS	2016-07-18	Nat Commun	Genome-wide association study identifies novel susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	6,579 European ancestry cases, 280,558 European ancestry controls	825 European ancestry cases, 11,518 European ancestry controls	3q28	LPP	rs11715549-G	0.46	1E-7		1.1		Affymetrix, Illumina [at least 560000] (imputed)	N
2019	chr3	188088260	188088261	rs11707807	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Squamous cell carcinoma	9,674 European ancestry cases, 625,657 European ancestry controls	NA	3q28	LPP	rs11707807-G	0.434062	3E-11		1.098901	[1.06-1.14]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2019	chr3	188088317	188088318	rs11719821	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Basal cell carcinoma	31,787 European ancestry cases, 619,351 European ancestry controls	NA	3q28	LPP	rs11719821-C	0.433785	2E-21		1.0869565	[1.06-1.1]	Affymetrix, Illumina [up to 9061544] (imputed)	N
2020	chr3	188089253	188089254	rs13076312	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	3q28	LPP	rs13076312-T	0.4579	2E-30		1.319	[1.26-1.38]	Illumina [8966411] (imputed)	N
2020	chr3	188093706	188093707	rs139785987	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q28		rs139785987-C	NR	3E-9		0.0125	[0.0084-0.0166] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2020	chr3	188094326	188094327	rs11505019	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q28	NR	rs11505019-G	0.415194	3E-12				Affymetrix, Illumina [23472807] (imputed)	N
2020	chr3	188100042	188100043	rs115288350	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs115288350-A	0.01045	3E-8	(AP1B1)	0.02733	NR unit decrease	Illumina [1671387] (imputed)	N
2020	chr3	188100255	188100256	rs1915930	31174203	Liyanage UE	2019-06-07	Hum Mol Genet	Combined analysis of keratinocyte cancers identifies novel genome-wide loci.	Keratinocyte cancer (MTAG)	at least 18,538 European ancestry cases, at least 340,302 European ancestry controls	NA	3q28	LPP	rs1915930-G	0.453293	2E-21		1.0869565	[1.06-1.1]	Affymetrix [7600000] (imputed)	N
2020	chr3	188101860	188101861	rs13079741	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite	84,724 European ancestry individuals	NA	3q28	LPP	rs13079741-G	0.542	1E-8		0.0210922	[0.014-0.028] unit decrease	Illumina [13520550] (imputed)	N
2020	chr3	188102103	188102104	rs13080163	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	3q28	LPP	rs13080163-T	0.435	1E-37		1.13	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
2020	chr3	188102715	188102716	rs2889896	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (age of onset)	37,846 British ancestry individuals	NA	3q28	NR	rs2889896-C	0.547	8E-13		0.975	[0.71-1.24] unit decrease	Affymetrix [10894596] (imputed)	N
2020	chr3	188105055	188105056	rs9864529	25608926	Betz RC	2015-01-22	Nat Commun	Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci.	Alopecia areata	2,332 European ancestry cases and 5,233 European ancestry controls	764 European ancestry cases and 2,256 European ancestry controls	3q28	LPP	rs9864529-A	NR	1E-6		1.18093		Illumina [1233578] (imputed)	N
2020	chr3	188107772	188107773	rs76534604	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	3q28		rs76534604-?	NR	5E-8				Affymetrix [NR] (imputed)	N
2020	chr3	188110816	188110817	rs10719384	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Asthma	8,216 Japanese ancestry cases, 201,592 Japanese ancestry controls	NA	3q28		rs10719384-A	0.553305322	4E-8		0.9126199	[0.883431608-0.942772586]	Illumina [8919992] (imputed)	N
2020	chr3	188112553	188112554	rs1464510	34290314	Brandes N	2021-07-21	Sci Rep	Genetic association studies of alterations in protein function expose recessive effects on cancer predisposition.	Non-melanoma skin cancer	18,944 White British ancestry cases, 255,886 White British ancestry controls	NA	3q28		rs1464510-?	NR	8E-12		0.928244	[0.91-0.95]	NR [685523]	N
2020	chr3	188112553	188112554	rs1464510	33574239	Eriksson D	2021-02-11	Nat Commun	GWAS for autoimmune Addison's disease identifies multiple risk loci and highlights AIRE in disease susceptibility.	Addison's disease	1,223 European ancestry cases, 4,097 European ancestry controls	NA	3q28	LPP	rs1464510-A	0.42	7E-12		1.37	[1.25-1.5]	Illumina [7068382] (imputed)	N
2020	chr3	188112553	188112554	rs1464510	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Diastolic blood pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	3q28	NR	rs1464510-A	0.4706	9E-6	(EA)	0.141	mmHg increase	Illumina [242296]	N
2020	chr3	188112553	188112554	rs1464510	20410501	Jin Y	2010-04-21	N Engl J Med	Variant of TYR and autoimmunity susceptibility loci in generalized vitiligo.	Vitiligo	1,392 European ancestry cases, 2,629 European ancestry controls	647 European ancestry cases, 1,056 European ancestry controls, 183 European ancestry trios, 1,383 European ancestry individuals from 332 families	3q28	LPP	rs1464510-T	0.44	1E-11		1.31	[1.21-1.41]	Illumina [520460]	N
2020	chr3	188112553	188112554	rs1464510	20190752	Dubois PC	2010-02-28	Nat Genet	Multiple common variants for celiac disease influencing immune gene expression.	Celiac disease	4,533 European ancestry cases, 10,750 European ancestry controls	4,918 European ancestry cases, 5,684 European ancestry controls	3q28	LPP	rs1464510-A	0.49	3E-40		1.29	[1.25-1.34]	Illumina [292387]	N
2020	chr3	188112553	188112554	rs1464510	18311140	Hunt KA	2008-03-02	Nat Genet	Newly identified genetic risk variants for celiac disease related to the immune response.	Celiac disease	767 European ancestry cases, 1,422 European ancestry controls	1,643 European ancestry cases, 3,406 European ancestry controls	3q28	LPP	rs1464510-A	NR	5E-9		1.23	[1.15-1.32]	Illumina [310605]	N
2020	chr3	188115681	188115682	rs9815073	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12B;IL23A	5,368 Icelandic ancestry individuals	NA	3q28		rs9815073-A	0.3296	4E-42		0.268918	[0.23-0.31] unit increase	Illumina [7506463] (imputed)	N
2020	chr3	188115681	188115682	rs9815073	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL12B	5,363 Icelandic ancestry individuals	NA	3q28		rs9815073-A	0.3296	3E-30		0.223607	[0.19-0.26] unit increase	Illumina [7506463] (imputed)	N
2020	chr3	188115681	188115682	rs9815073	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q28	LPP	rs9815073-A	0.374	9E-15	(Interleukin-23, IL12B.IL23A.10365.132.3)	0.21	[0.15-0.27] unit increase	Affymetrix [10572788] (imputed)	N
2020	chr3	188115681	188115682	rs9815073	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Mosquito bite size	84,724 European ancestry individuals	NA	3q28	LPP	rs9815073-C	0.657	4E-8		0.033384	[0.021-0.045] unit decrease	Illumina [13520550] (imputed)	N
2020	chr3	188115681	188115682	rs9815073	26956414	Berndt SI	2016-03-09	Nat Commun	Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.	Chronic lymphocytic leukemia	3,100 European ancestry cases, 7,667 European ancestry controls	1,958 cases,  5,530 controls	3q28	LPP	rs9815073-C	0.651	4E-8		1.18	[1.11-1.25]	Affymetrix, Illumina [~ 8500000] (imputed)	N
2020	chr3	188117785	188117786	rs6444285	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Skin cancer	25,928 European ancestry cases, 466,275 European ancestry controls, 154 East Asian ancestry cases, 178,572 East Asian ancestry controls	NA	3q28		rs6444285-T	NR	4E-11		0.0629	[0.044-0.082] unit decrease	Affymetrix, Illumina [25845421] (imputed)	N
2020	chr3	188119581	188119582	rs2030520	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q28		rs2030520-?	NR	1E-9				NR [~ 8900000] (imputed)	N
2020	chr3	188119900	188119901	rs2030519	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q28		rs2030519-?	NR	2E-30				NR [~ 8900000] (imputed)	N
2020	chr3	188119900	188119901	rs2030519	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Celiac disease	11,489 European ancestry cases, 22,308 European ancestry controls	NA	3q28	LPP	rs2030519-?		5E-52		1.3221326		Illumina [252970]	N
2020	chr3	188119900	188119901	rs2030519	30013184	Waage J	2018-07-16	Nat Genet	Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis.	Allergic rhinitis	59,762 European and unknown ancestry cases, 152,358 European and unknown ancestry controls	60,720 European ancestry cases, 618,527 European ancestry controls	3q28	TPRG1, LPP	rs2030519-G	0.4869	2E-13		1.06	[1.04-1.07]	Affymetrix, Illumina, Perlegen [16531985] (imputed)	N
2020	chr3	188119900	188119901	rs2030519	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Allergy	66,973 European ancestry cases, 113,768 European ancestry controls	NA	3q28	LPP	rs2030519-?	NR	3E-8		1.043	[1.028-1.059]	Illumina [12845910] (imputed)	N
2020	chr3	188119900	188119901	rs2030519	22057235	Trynka G	2011-11-06	Nat Genet	Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease.	Celiac disease	11,812 European ancestry cases, 229 Indian ancestry cases, 11,837 European ancestry controls, 391 Indian ancestry controls	NA	3q28	LPP	rs2030519-A	0.514	3E-49		1.3157895		Illumina [139553]	N
2020	chr3	188121018	188121019	rs12634152	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	3q28		rs12634152-T	NR	2E-53		0.1333	[0.12-0.15] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2020	chr3	188121018	188121019	rs12634152	31036433	Pividori M	2019-04-26	Lancet Respir Med	Shared and distinct genetic risk factors for childhood-onset and adult-onset asthma: genome-wide and transcriptome-wide studies.	Asthma (childhood onset)	9,433 British ancestry cases, 318,237 British ancestry controls	NA	3q28	LPP, FLJ42393, LPP-AS1	rs12634152-T	0.547	1E-16		1.133	[1.100-1.166]	Affymetrix [10894596] (imputed)	N
2020	chr3	188121018	188121019	rs12634152	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	3q28	LPP	rs12634152-C	0.45193	5E-54		0.14234072	[0.12-0.16] unit increase	Affymetrix [7288503] (imputed)	N
2020	chr3	188121018	188121019	rs12634152	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q28		rs12634152-?	NR	2E-48				NR [~ 8900000] (imputed)	N
2020	chr3	188122977	188122978	rs2049218	33549134	Adolphe C	2021-02-06	Genome Med	Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility.	Basal cell carcinoma	17,416 European ancestry cases, 375,455 European ancestry controls	NA	3q28	LPP	rs2049218-T	0.451398	1E-11		0.07445099	[0.053-0.096] unit increase	Affymetrix [7260263] (imputed)	N
2020	chr3	188122977	188122978	rs2049218	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Graves' disease	2,176 Japanese ancestry cases, 210,277 Japanese ancestry controls	NA	3q28		rs2049218-T	0.388945975	5E-8		0.84102017	[0.790299076-0.894996529]	Illumina [8919992] (imputed)	N
2020	chr3	188124992	188124993	rs11335233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3q28		rs11335233-A	NR	4E-26		0.1064	[0.087-0.126] unit decrease	Affymetrix, Illumina [25801083] (imputed)	N
2020	chr3	188124992	188124993	rs11335233	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hashimoto thyroiditis	15,654 European ancestry cases, 379,986 European ancestry controls, 537 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3q28		rs11335233-A	NR	1E-9		0.1017	[0.069-0.135] unit decrease	Affymetrix, Illumina [25797652] (imputed)	N
2020	chr3	188125119	188125120	rs13093110	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Graves' disease	2,285 European ancestry cases, 9,364 European ancestry controls	NA	3q28	LPP	rs13093110-T	0.452	8E-7		1.18	[1.10-1.26]	Illumina [103875]	N
2020	chr3	188125119	188125120	rs13093110	22922229	Cooper JD	2012-12-01	Hum Mol Genet	Seven newly identified loci for autoimmune thyroid disease.	Autoimmune thyroid diseases (Graves disease or Hashimoto's thyroiditis)	2,282 European ancestry Graves disease cases, 451 European ancestry Hashimoto's thyroiditis cases, 9364 European ancestry controls	NA	3q28	LPP	rs13093110-T	0.452	4E-8		1.19	[1.12-1.26]	Illumina [103875]	N
2020	chr3	188128793	188128794	rs73192661	28165464	Law PJ	2017-02-06	Nat Commun	Genome-wide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia.	Chronic lymphocytic leukemia	4,478 European ancestry cases and 13,213 European ancestry controls.	1,722 European ancestry cases and 4,385 European ancestry controls.	3q28	LPP	rs73192661-C	NR	5E-6		1.14	[1.08-1.2]	Affymetrix, Illumina [> 10000000] (imputed)	N
2020	chr3	188128978	188128979	rs9860547	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma onset (childhood vs adult)	13,962 European ancestry childhood onset cases, 14,873 European ancestry adult onset cases	31,002 European ancestry childhood onset cases, 16,297 European ancestry adult onset cases	3q28	LPP	rs9860547-A	0.449	1E-16		1.086	[1.07-1.11]	Affymetrix [9000000] (imputed)	N
2020	chr3	188128978	188128979	rs9860547	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q28	LPP	rs9860547-?	NR	4E-42		1.105	[1.09-1.12]	Affymetrix [9000000] (imputed)	N
2020	chr3	188128978	188128979	rs9860547	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q28	LPP	rs9860547-A	NR	6E-17		1.059	[1.05-1.07]	Affymetrix [9000000] (imputed)	N
2020	chr3	188128978	188128979	rs9860547	23817569	Hinds DA	2013-06-30	Nat Genet	A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.	Self-reported allergy	53,862 European ancestry individuals	NA	3q28	LPP, BCL6	rs9860547-A	0.4629	1E-9		0.0741	[0.050-0.098] unit increase	Illumina [2400000] (imputed)	N
2020	chr3	188132109	188132110	rs6780858	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Graves' disease	1,678 European ancestry cases, 456,942 European ancestry controls, 2,809 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3q28		rs6780858-G	NR	4E-13		0.1634	[0.12-0.21] unit decrease	Affymetrix, Illumina [25841587] (imputed)	N
2020	chr3	188132109	188132110	rs6780858	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (multivariate analysis)	477,968 European ancestry individuals	NA	3q28	LPP	rs6780858-G	0.524	1E-13		0.031	[0.023-0.039] unit decrease	NR [NR] (imputed)	N
2020	chr3	188132109	188132110	rs6780858	32603359	Ferreira MAR	2020-06-30	PLoS Genet	Age-of-onset information helps identify 76 genetic variants associated with allergic disease.	Allergic disease (asthma, hay fever and/or eczema) (age of onset)	117,130 European ancestry individuals	NA	3q28	LPP	rs6780858-G	0.524	1E-13		0.031	[0.023-0.039] unit decrease	NR [7647814] (imputed)	N
2020	chr3	188133162	188133163	rs13098877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	38,369 European ancestry cases, 411,131 European ancestry controls, 13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3q28		rs13098877-T	NR	1E-12		0.0499	[0.036-0.064] unit decrease	Affymetrix, Illumina [25837673] (imputed)	N
2020	chr3	188133162	188133163	rs13098877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Asthma	13,015 East Asian ancestry cases, 162,933 East Asian ancestry controls	NA	3q28		rs13098877-T	0.54498405	3E-9		0.08360758	[0.056-0.111] unit decrease	Illumina [13429513] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q28		rs60946162-T	NR	8E-9		0.0101	[0.0068-0.0134] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pediatric asthma	27,712 European ancestry cases, 411,131 European ancestry controls, 547 East Asian ancestry cases, 161,803 East Asian ancestry controls	NA	3q28		rs60946162-T	NR	3E-8		0.0513	[0.033-0.07] unit increase	Affymetrix, Illumina [25832605] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	3q28		rs60946162-T	NR	2E-11		0.0555	[0.039-0.072] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q28	NR	rs60946162-T	0.4549	5E-10		1.038	[1.026-1.05]	Affymetrix [15688218] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3q28	LPP	rs60946162-T	0.455369	6E-9		0.052939937	[0.035-0.071] unit increase	Affymetrix [7288503] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q28		rs60946162-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2020	chr3	188133335	188133336	rs60946162	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q28	LPP	rs60946162-T	0.42	9E-15		1.041	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
2020	chr3	188133438	188133439	rs6808893	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD14- CD16+ monocyte	3,621 Sardinian (founder/genetic isolate) ancestry individuals	NA	3q28		rs6808893-T	0.57199	3E-16		0.2043	[0.16-0.25] unit decrease	Illumina [18212658] (imputed)	N
2020	chr3	188133438	188133439	rs6808893	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c+ HLA DR++ monocyte %monocyte	3,042 Sardinian (founder/genetic isolate) ancestry individuals	NA	3q28		rs6808893-T	0.5716300000000001	8E-9		0.1582	[0.1-0.21] unit decrease	Illumina [18133084] (imputed)	N
2020	chr3	188133438	188133439	rs6808893	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q28	LPP	rs6808893-T	0.511579	3E-13		0.01646214	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2020	chr3	188133438	188133439	rs6808893	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3q28	LPP	rs6808893-C	0.4875	9E-17				Affymetrix [15688218] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	3q28	LPP	rs13099273-T	0.507649162568413	6E-16		0.053581715	[0.041-0.067] unit decrease	Affymetrix [35186738] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q28	LPP	rs13099273-A	0.49	5E-26				NR [> 9500000] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q28	LPP	rs13099273-A	0.486492	3E-22		1.0610926	[1.04848148453469-1.07385532469458]	NR [9572556] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q28	LPP, LPP-AS1, FLJ42393, LPP-AS2, MIR28, TPRG1-AS1	rs13099273-A	0.49235	1E-13		1.0485258	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	3q28	NR	rs13099273-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q28	NR	rs13099273-?	NR	3E-14				Affymetrix [~ 8270000] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3q28	NR	rs13099273-?	NR	1E-26				Affymetrix [~ 8270000] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q28	LPP	rs13099273-A	0.492253	4E-17		1.0538876	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
2020	chr3	188133517	188133518	rs13099273	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q28		rs13099273-?	NR	6E-16				NR [~ 8900000] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	HLA DR on CD33dim HLA DR+ CD11b+	1,634 Sardinian (founder/genetic isolate) ancestry individuals	NA	3q28		rs12485444-A	0.47295	2E-10		0.2278	[0.16-0.3] unit increase	Illumina [16998734] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q28	LPP	rs12485444-A	0.54517	2E-12		0.016282018	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	3q28	LPP	rs12485444-A	0.545084	4E-37		0.029013187	[0.025-0.033] unit decrease	Affymetrix [93095623] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q28	LPP	rs12485444-T	0.454918	3E-27		0.024612663	[0.02-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q28	NR	rs12485444-A	0.518273	3E-34				Affymetrix, Illumina [23467995] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q28	NR	rs12485444-A	0.543846	6E-34		0.023481	[0.02-0.027] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	3q28	LPP	rs12485444-A	0.5392	5E-14		0.028056	[0.021-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2020	chr3	188135782	188135783	rs12485444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	3q28	LPP	rs12485444-A	0.5393	3E-9		0.02221896	[0.015-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2020	chr3	188140652	188140653	rs4122385	28800603	Arpawong TE	2017-08-11	PLoS One	Genetic variants specific to aging-related verbal memory: Insights from GWASs in a population-based cohort.	Verbal memory performance (immediate recall level)	7,486 European ancestry individuals aged 50 years or older	6,898 European ancestry individuals aged 50 years or older	3q28	NR	rs4122385-A	NR	2E-6			NR unit decrease	Illumina [at least 1198956] (imputed)	N
2020	chr3	188184928	188184929	rs7610761	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q28	NR	rs7610761-A	NR	5E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
2020	chr3	188187249	188187250	rs1426271	34380480	Liu J	2021-08-12	BMC Med	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	Schizophrenia	26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	3q28		rs1426271-A	NR	3E-8		0.95		Illumina [NR] (imputed)	N
2021	chr3	188246256	188246257	rs11920292	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	3q28	LPP	rs11920292-?		3E-6	(M)	28.44	[16.52-40.36] unit increase	Illumina [693128]	N
2021	chr3	188289696	188289697	rs10937355	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q28	LPP	rs10937355-A	0.367	9E-6	(Eotaxin )	0.03	[NR] pg/mL increase	Illumina [899892]	N
2021	chr3	188299901	188299902	rs6444305	25279986	Skibola CF	2014-10-02	Am J Hum Genet	Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region.	Follicular lymphoma	2,728 European ancestry cases, 7,758 European ancestry controls	1,795 European ancestry cases, 5,586 European ancestry controls	3q28	LPP	rs6444305-G	0.276	1E-10		1.21	[1.14-1.28]	Illumina [up to 21554489]	N
2021	chr3	188307517	188307518	rs6444307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs6444307-?	NR	7E-15				NR [~ 8900000] (imputed)	N
2021	chr3	188311658	188311659	rs747952496	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	3q28		rs747952496-A	4.0E-4	5E-11		7.019556	[3.926571567-12.54890398]	Affymetrix, Illumina [NR] (imputed)	N
2021	chr3	188327018	188327019	rs149437411	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	3q28		rs149437411-?	NR	2E-15		0.121519	[0.091-0.152] unit increase	NR [9800000] (imputed)	N
2021	chr3	188327018	188327019	rs149437411	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	3q28	LPP	rs149437411-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
2021	chr3	188327018	188327019	rs149437411	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	3q28	LPP	rs149437411-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
2021	chr3	188328475	188328476	rs73194495	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q28	LPP	rs73194495-T	0.189918	3E-8		1.048392	[1.03-1.06]	Affymetrix [8274727] (imputed)	N
2021	chr3	188338762	188338763	rs9877898	32634583	Meng Y	2020-07-04	Int J Infect Dis	Genome-wide association study identifies TPH2 variant as a novel locus for severe CV-A6-associated hand, foot, and mouth disease in Han Chinese.	CV-A6-associated hand, foot, and mouth disease (severe vs mild)	115 Han Chinese ancestry severe cases, 115 Han Chinese ancestry mild controls	NA	3q28	LPP	rs9877898-?	NR	5E-6				Illumina [NR]	N
2022	chr3	188365277	188365278	rs4686991	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs4686991-?	NR	7E-12				NR [~ 8900000] (imputed)	N
2022	chr3	188400238	188400239	rs17670280	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q28	LPP	rs17670280-G	0.831921	5E-12		1.0591149	[1.04-1.08]	Affymetrix [8274727] (imputed)	N
2022	chr3	188400238	188400239	rs17670280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q28		rs17670280-?	NR	2E-13				NR [~ 8900000] (imputed)	N
2022	chr3	188401137	188401138	rs55661102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q28	NR	rs55661102-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2022	chr3	188401137	188401138	rs55661102	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Asthma (childhood onset)	13,435 European ancestry cases, 393,186 European ancestry controls	NA	3q28	NR	rs55661102-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
2022	chr3	188401137	188401138	rs55661102	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (childhood onset)	13,962 European ancestry cases, 300,671 European ancestry controls	31,759 European ancestry cases, 214,890 European ancestry controls	3q28	LPP	rs55661102-?	NR	4E-20		1.096	[1.08-1.12]	Affymetrix [9000000] (imputed)	N
2022	chr3	188401137	188401138	rs55661102	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q28	LPP	rs55661102-A	NR	9E-13		1.067	[1.05-1.08]	Affymetrix [9000000] (imputed)	N
2022	chr3	188401159	188401160	rs56116661	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Inflammatory bowel disease	25,042 European and unknown ancestry cases, 34,915 European and unknown ancestry controls	NA	3q28	LPP	rs56116661-?		9E-10				Illumina [9725440] (imputed)	N
2022	chr3	188401159	188401160	rs56116661	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3q28	LPP	rs56116661-C	0.795	6E-10		1.14	[1.10-1.18]	Illumina [9560910] (imputed)	N
2022	chr3	188401159	188401160	rs56116661	28067908	de Lange KM	2017-01-09	Nat Genet	Genome-wide association study implicates immune activation of multiple integrin genes in inflammatory bowel disease.	Crohn's disease	12,194 European and unknown ancestry cases, 28,072 European and unknown ancestry controls	NA	3q28	LPP	rs56116661-?		6E-10				Illumina [9560910] (imputed)	N
2022	chr3	188402470	188402471	rs73196739	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3q28	NR	rs73196739-?	NR	2E-11	(conditional)			Affymetrix [15688218] (imputed)	N
2022	chr3	188402470	188402471	rs73196739	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q28		rs73196739-?	NR	6E-15				NR [~ 8900000] (imputed)	N
2022	chr3	188402470	188402471	rs73196739	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Asthma	28,399 European ancestry cases, 128,843 European ancestry controls	NA	3q28	LPP	rs73196739-?	NR	7E-9		1.0845987	[1.05-1.11]	Illumina [13747813] (imputed)	N
2022	chr3	188402585	188402586	rs17607589	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q28	LPP	rs17607589-C	0.84	2E-14		1.053	[1.04-1.07]	Affymetrix, Illumina [8307659] (imputed)	N
2022	chr3	188419525	188419526	rs1254774	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (cisplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	3q28	LPP	rs1254774-?		4E-6				NR [~ 3000000] (imputed)	N
2022	chr3	188420896	188420897	rs1152846	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Weight	Up to 3,925 European individuals	NA	3q28	NR	rs1152846-G	0.77	6E-6	(females + males)	1.7	[NR] kg decrease	Illumina [318237]	N
2022	chr3	188420896	188420897	rs1152846	19851299	Johansson A	2009-10-22	Obesity (Silver Spring)	Linkage and genome-wide association analysis of obesity-related phenotypes: association of weight with the MGAT1 gene.	Body mass index	1,079 South Tyrolean individuals, 790 Dutch founder individuals, 2,060 European ancestry individuals	NA	3q28	NR	rs1152846-G	0.77	3E-6	(females +males)	0.09	[NR] kg decrease	Illumina [318237]	N
2022	chr3	188421361	188421362	rs1152847	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q28	LPP	rs1152847-G	0.646524	3E-8		0.0116004	[0.0075-0.0157] unit increase	Affymetrix [NR] (imputed)	N
2022	chr3	188438870	188438871	rs112643361	34411106	Liu C	2021-08-19	PLoS Genet	Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations.	Facial morphology (segment 21)	2,595 Tanzanian ancestry individuals	NA	3q28		rs112643361-?	NR	2E-8				Illumina [NR] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q28		rs9815874-T	NR	9E-24		0.0192	[0.015-0.023] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q28	LPP	rs9815874-T	0.299314	1E-31		0.028194498	[0.023-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q28	LPP	rs9815874-T	0.299321	6E-34		0.029238677	[0.025-0.034] unit increase	Affymetrix [93095623] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q28	NR	rs9815874-T	0.25198	2E-37				Affymetrix, Illumina [19872809] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q28	NR	rs9815874-T	0.299538	2E-39		0.028359	[0.024-0.033] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
2022	chr3	188441160	188441161	rs9815874	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q28		rs9815874-?	NR	1E-32				NR [~ 8900000] (imputed)	N
2022	chr3	188442479	188442480	rs9290877	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q28	LPP, MIR28, LPP-AS1, TPRG1-AS1, TPRG1, TPRG1-AS2	rs9290877-C	0.30155	5E-11		1.04585	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
2022	chr3	188442479	188442480	rs9290877	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q28	NR	rs9290877-C	0.3016	2E-15		1.048	[1.036-1.059]	Affymetrix [15688218] (imputed)	N
2022	chr3	188442479	188442480	rs9290877	22075330	Granada M	2011-11-08	J Allergy Clin Immunol	A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.	IgE levels	6,819 European ancestry individuals	7,809 European ancestry indivduals	3q28	LPP	rs9290877-C	NR	2E-6		0.04	[NR] unit decrease	Affymetrix [2540223] (imputed)	N
2022	chr3	188445782	188445783	rs7650683	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q28	NR	rs7650683-C	0.2994	4E-13		1.048	[1.035-1.06]	Affymetrix [15688218] (imputed)	N
2022	chr3	188445782	188445783	rs7650683	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q28	NR	rs7650683-C	0.2994	2E-15		1.048	[1.036-1.06]	Affymetrix [15688218] (imputed)	N
2022	chr3	188446663	188446665	rs542618547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q28	LPP	rs542618547-G	0.3109	4E-13		0.02816335	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
2022	chr3	188446663	188446665	rs542618547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil percentage of granulocytes	170,672 European ancestry individuals	NA	3q28	LPP	rs542618547-G	0.3109	6E-12		0.02678185	[0.019-0.034] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2022	chr3	188446663	188446665	rs542618547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of white cells	172,378 European ancestry individuals	NA	3q28	LPP	rs542618547-G	0.3108	8E-15		0.03009134	[0.023-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2022	chr3	188446663	188446665	rs542618547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil percentage of granulocytes	170,536 European ancestry individuals	NA	3q28	LPP	rs542618547-G	0.3108	8E-14		0.02906495	[0.021-0.037] unit increase	Affymetrix [~ 2500000] (imputed)	N
2022	chr3	188446663	188446665	rs542618547	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q28	LPP	rs542618547-G	0.3109	1E-14		0.02996942	[0.022-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
2022	chr3	188470237	188470238	rs6762714	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3q28	LPP, TPRG1-AS1	rs6762714-T	0.825	6E-7	(Chinese)	1.2	[1.12-1.29]	NR [6344733] (imputed)	N
2022	chr3	188470237	188470238	rs6762714	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3q28	LPP, TPRG1-AS1	rs6762714-T	0.392	8E-10	(EA)	1.14	[1.09-1.19]	NR [6344733] (imputed)	N
2022	chr3	188470237	188470238	rs6762714	27399966	Morris DL	2016-07-11	Nat Genet	Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.	Systemic lupus erythematosus	1,659 Chinese ancestry cases, 3,398 Chinese ancestry controls, 4,036 European ancestry cases, 6,959 European ancestry controls	3,043 Chinese ancestry cases, 5,074 Chinese ancestry controls, 2,643 European ancestry cases, 9,032 European ancestry controls	3q28	LPP, TPRG1-AS1	rs6762714-T	0.392	4E-15		1.16	[1.12-1.20]	NR [6344733] (imputed)	N
2023	chr3	188507903	188507904	rs13087217	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (sMEQ score)	2,364 Finnish ancestry evening individuals, 5,072 Finnish ancestry morning individuals	NA	3q28	LPP	rs13087217-G	NR	9E-7		1.28313	[1.16177-1.41718]	Illumina [5842835] (imputed)	N
2023	chr3	188519593	188519594	rs6801602	33230199	Okada D	2020-11-23	J Hum Genet	Genome-wide association study of individual differences of human lymphocyte profiles using large-scale cytometry data.	T cell lymphocyte profile difference	298 individuals	NA	3q28	NR	rs6801602-?	NR	3E-8			[NR]	NR [1665663]	N
2023	chr3	188540825	188540826	rs3856920	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs3856920-?	NR	5E-12				NR [~ 8900000] (imputed)	N
2023	chr3	188574995	188574996	rs1513181	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to the order Clostridiales)	1,068 Japanese ancestry individuals	NA	3q28	LPP	rs1513181-C	0.17	9E-6	(male)	0.264	[0.15-0.38] unit increase	Illumina [6380737] (imputed)	N
2023	chr3	188584678	188584679	rs13067593	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune reponse to smallpox (secreted IFN-alpha)	Up to 512 European ancestry individuals, up to 199 African American individuals	NA	3q28	LPP	rs13067593-G		8E-8	(AA)			Illumina [NR]	N
2023	chr3	188592144	188592145	rs9830664	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	3q28	LPP	rs9830664-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
2023	chr3	188607070	188607071	rs76971802	31092297	Guan M	2019-05-15	Hum Genomics	Genome-wide association study identifies novel loci for type 2 diabetes-attributed end-stage kidney disease in African Americans.	Type 2 diabetes and end-stage kidney disease	3,432 African-American cases, 6,977 African-American controls	NA	3q28		rs76971802-T	0.087	9E-6		1.35	[1.19-1.54]	Affymetrix, Illumina [NR] (imputed)	N
2025	chr3	188822137	188822138	rs115700131	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		TPRG1	rs115700131-?	NR	3E-12	(male)	4.25384	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2026	chr3	188949285	188949286	rs9820421	26926045	Adhikari K	2016-03-01	Nat Commun	A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.	Hair color	6,357 Latin American individuals	NA	3q28	TPRG1, TPRG1-AS2	rs9820421-?	NR	3E-6				Illumina [9143600] (imputed)	N
2027	chr3	189045797	189045798	rs114215538	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q28		rs114215538-T	NR	6E-8		6.4802	[4.2-8.76] unit increase	Illumina [NR] (imputed)	N
2027	chr3	189079717	189079718	rs699322	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		3q28	intergenic	rs699322-G	0.894	4E-7		0.793	[0.49-1.09] unit increase	Illumina [640625] (imputed)	N
2027	chr3	189113260	189113261	rs6789327	24144296	Cheng CY	2013-08-08	Am J Hum Genet	Nine loci for ocular axial length identified through genome-wide association studies, including shared loci with refractive error.	Axial length	12,531 European ancestry individuals	8,216 Asian ancestry individuals	3q28	TPRG1	rs6789327-A	0.0012	3E-7		3.7647	[2.33-5.2] unit increase	Illumina [2500000] (imputed)	N
2028	chr3	189186543	189186544	rs59473400	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs59473400-T	0.04007	5E-9	(PEA15)	0.005547	NR unit increase	Illumina [1671387] (imputed)	N
2028	chr3	189186543	189186544	rs59473400	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs59473400-T	0.04007	1E-8	(CFL1)	0.6459	NR unit increase	Illumina [1671387] (imputed)	N
2028	chr3	189205031	189205032	rs6791479	32041948	Sarin KY	2020-02-10	Nat Commun	Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma.	Cutaneous squamous cell carcinoma	19,149 European ancestry cases, 680,049 European ancestry controls	NA	3q28	TPRG1, TP63	rs6791479-T	0.427	6E-15		0.09	[0.07-0.11] unit increase	NR [13607369] (imputed)	N
2028	chr3	189205031	189205032	rs6791479	26829030	Asgari MM	2016-01-29	J Invest Dermatol	Identification of Susceptibility Loci for Cutaneous Squamous Cell Carcinoma.	Squamous cell carcinoma	6,891 European ancestry cases, 54,566 European ancestry controls	810 European ancestry cases,  5,600 European ancestry controls	3q28	TPRG1, TP63	rs6791479-T	0.43	1E-11		1.13	[1.09-1.16]	Affymetrix [9610468] (imputed)	N
2028	chr3	189209645	189209646	rs56360320	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	3q28		rs56360320-?	NR	4E-9				NR [~ 8900000] (imputed)	N
2028	chr3	189258283	189258284	rs74725117	33204752	Butler-Laporte G	2020-09-24	Open Forum Infect Dis	Genetic Determinants of Antibody-Mediated Immune Responses to Infectious Diseases Agents: A Genome-Wide and HLA Association Study.	Chlamydia trachomatis PorB antibody levels	273 White British ancestry individuals	NA	3q28	TP63	rs74725117-T	0.987	5E-8		1.71	[1.12-2.30] unit decrease	NR [25472218] (imputed)	N
2029	chr3	189281117	189281118	rs189566544	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q28	NR	rs189566544-?	NR	3E-6		13.299	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2029	chr3	189290950	189290951	rs144563425	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q28	NR	rs144563425-?	NR	4E-6		12.914	NR unit increase	Affymetrix [at least 600000] (imputed)	N
2029	chr3	189334223	189334224	rs4687074	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q28		rs4687074-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2029	chr3	189343242	189343242	rs11375254	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Lung adenocarcinoma	15,581 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	3q28	NR	rs11375254-T	NR	8E-26		1.18	[1.14-1.22]	NR [NR] (imputed)	N
2029	chr3	189343242	189343242	rs11375254	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Squamous cell lung carcinoma	3,860 Chinese ancestry cases, 4,490 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q28	NR	rs11375254-T	0.51	3E-8	(East Asian)	1.19	[1.12-1.27]	Illumina [~ 11000000] (imputed)	N
2029	chr3	189343242	189343242	rs11375254	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q28	TP63	rs11375254-T	0.525	1E-20		1.13	[1.10-1.16]	Illumina [~ 11000000] (imputed)	N
2029	chr3	189343242	189343242	rs11375254	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Non-small cell lung cancer	13,327 Chinese ancestry cases, 13,793 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q28	NR	rs11375254-T	0.51	3E-21	(East Asian)	1.21	[1.16-1.26]	Illumina [~ 11000000] (imputed)	N
2029	chr3	189343242	189343242	rs11375254	31326317	Dai J	2019-07-17	Lancet Respir Med	Identification of risk loci and a polygenic risk score for lung cancer: a large-scale prospective cohort study in Chinese populations.	Lung adenocarcinoma	8,762 Chinese ancestry cases, 6,819 European ancestry cases, 13,328 Chinese ancestry controls, 14,027 European ancestry controls	NA	3q28	NR	rs11375254-T	0.51	2E-20	(East Asian)	1.23	[1.17-1.28]	Illumina [~ 11000000] (imputed)	N
2029	chr3	189343423	189343424	rs7610017	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	3q28	TP63	rs7610017-?	NR	1E-6	(multiple phenotypes)			Illumina [530992]	N
2029	chr3	189344010	189344011	rs4398410	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	3q28		rs4398410-T	0.325924437	5E-10		0.14453214	[0.099-0.19] unit decrease	Illumina [13429980] (imputed)	N
2029	chr3	189346958	189346959	rs35139818	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lung cancer	3,791 European ancestry cases, 489,012 European ancestry controls, 4,444 East Asian ancestry cases, 174,282 East Asian ancestry controls	NA	3q28		rs35139818-G	NR	1E-10		0.1235	[0.086-0.161] unit increase	Affymetrix, Illumina [25845450] (imputed)	N
2029	chr3	189356260	189356261	rs4488809	31009812	Hung RJ	2019-04-19	J Thorac Oncol	Lung Cancer Risk in Never Smokers of European Descent is Associated with Genetic Variation in the 5P15.33 TERT-CLPTM1L Region.	Lung cancer in never smokers	2,676 European ancestry cases, 5,355 European ancestry controls	960 European ancestry cases, 940 European ancestry controls	3q28	TP63	rs4488809-?	NR	9E-7		1.2195122	NR	Illumina [at least 517482] (imputed)	N
2029	chr3	189356260	189356261	rs4488809	23143601	Lan Q	2012-11-11	Nat Genet	Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.	Lung cancer	5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls	1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls	3q28	TP63	rs4488809-C	0.42	4E-9		1.19	[1.12-1.26]	Illumina [596032]	N
2029	chr3	189356260	189356261	rs4488809	21725308	Hu Z	2011-07-03	Nat Genet	A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese.	Lung cancer	2,331 Han Chinese ancestry cases, 3,077 Han Chinese ancestry controls	6,313 Han Chinese ancestry cases, 6,409 Han Chinese ancestry controls	3q28	TP63	rs4488809-C	0.47	7E-26		1.26	[1.21-1.32]	Affymetrix [906703]	N
2029	chr3	189356940	189356941	rs7636839	27501781	Shiraishi K	2016-08-09	Nat Commun	Association of variations in HLA class II and other loci with susceptibility to EGFR-mutated lung adenocarcinoma.	EGFR mutation-positive lung adenocarcinoma	663 Japanese ancestry cases, 4,367 Japanese ancestry controls	2,510 Japanese ancestry cases, 10,791 Japanese ancestry controls	3q28	TP63	rs7636839-A	0.479	9E-13		1.23	[1.16-1.30]	Illumina [NR] (imputed)	N
2029	chr3	189357198	189357199	rs13080835	32889700	Qin N	2020-09-05	Front Med	Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.	Non-small cell lung cancer	27,120 Chinese or European ancestry cases, 27,355 Chinese or European ancestry controls	NA	3q28	NR	rs13080835-G	NR	1E-20		0.88	[0.86-0.91]	NR [NR] (imputed)	N
2029	chr3	189357198	189357199	rs13080835	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	3q28	TP63	rs13080835-G	0.5071124929999999	1E-6		1.0584221	[1.03-1.08]	Illumina [10439017] (imputed)	N
2029	chr3	189357198	189357199	rs13080835	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung adenocarcinoma	11,273 European ancestry cases,  55,483 European ancestry controls	NA	3q28	TP63	rs13080835-G	0.506638548	7E-12		1.1171037	[1.08-1.15]	Illumina [10439017] (imputed)	N
2029	chr3	189357601	189357602	rs13314271	24880342	Wang Y	2014-06-01	Nat Genet	Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.	Lung cancer	3,442 European ancestry adenocarcinoma cases, 3,275 European ancestry squamous cell carcinoma cases, 4,631 cases, up to 15,861 controls	3,589 European ancestry adenocarcinoma cases, 3,202 European ancestry squamous cell carcinoma cases, 3,455 cases, up to 38,295 controls	3q28	TP63	rs13314271-T	0.49	7E-10	(Adenocarcinoma)	1.13	[1.09-1.18]	Illumina [8900000] (imputed)	N
2029	chr3	189383182	189383183	rs10937405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q28	NR	rs10937405-T	NR	3E-9		0.0149	[0.01-0.0198] unit increase	Affymetrix [9000000] (imputed)	N
2029	chr3	189383182	189383183	rs10937405	22797724	Shiraishi K	2012-07-15	Nat Genet	A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.	Lung adenocarcinoma	1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls	4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls	3q28	TP63	rs10937405-C	0.67	7E-17		1.25	[1.19-1.32]	Illumina [538166]	N
2029	chr3	189383182	189383183	rs10937405	20871597	Miki D	2010-09-26	Nat Genet	Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations.	Lung adenocarcinoma	1,004 Japanese ancestry cases, 1,900 Japanese ancestry controls	1,094 East Asian ancestry cases, 9,148 East Asian ancestry controls	3q28	TP63	rs10937405-C	0.67	7E-12		1.31	[1.22-1.42]	Illumina [432024]	N
2029	chr3	189395714	189395715	rs79692229	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q28		rs79692229-A	NR	3E-11		0.0234	[0.017-0.03] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2030	chr3	189399068	189399069	rs111534976	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q28	NR	rs111534976-G	NR	2E-9		0.0287	[0.019-0.038] unit increase	Affymetrix [9000000] (imputed)	N
2030	chr3	189401775	189401776	rs17505102	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	3q28	TP63	rs17505102-G	0.85	9E-9	(ETV6-RUNX1 positive)	1.5873016	[1.33-1.92]	Affymetrix [355750]	N
2030	chr3	189401775	189401776	rs17505102	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	3q28	TP63	rs17505102-G	0.85	2E-8		1.4705882	[1.28-1.67]	Affymetrix [355750]	N
2030	chr3	189401775	189401776	rs17505102	22076464	Ellinghaus E	2011-11-11	Leukemia	Identification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.	Acute lymphoblastic leukemia (childhood)	419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls	951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls	3q28	TP63	rs17505102-C	0.15	3E-8	(ETV6-RUNX1 positive, Northern European)			Affymetrix [355750]	N
2030	chr3	189409999	189410000	rs2378515	32349335	Lundback V	2020-04-27	Cells	Genome-Wide Association Study of Diabetogenic Adipose Morphology in the GENetics of Adipocyte Lipolysis (GENiAL) Cohort.	Adipose morphology	894 individuals	NA	3q28	NR	rs2378515-G	0.1802	5E-8		54.0	[34-73] unit increase	NR [9714326] (imputed)	N
2030	chr3	189441241	189441242	rs11711203	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	3q28		rs11711203-T	0.3	2E-10		0.1	unit decrease	Illumina [2093892] (imputed)	N
2030	chr3	189441241	189441242	rs11711203	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	3q28		rs11711203-T	0.3	1E-6		0.09	unit decrease	Illumina [2398641] (imputed)	N
2030	chr3	189481563	189481564	rs6797860	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Anaeromassilibacillus sp001305115 abundance in stool	5,959 Finnish ancestry individuals	NA	3q28		rs6797860-A	0.344747	3E-8		0.0501061	[0.032-0.068] unit increase	Illumina [7980478] (imputed)	N
2030	chr3	189498827	189498828	rs17505775	26528553	Davenport ER	2015-11-03	PLoS One	Genome-Wide Association Studies of the Human Gut Microbiota.	Gut microbiome composition (summer)	91 Hutterite individuals	NA	3q28	NR	rs17505775-?	NR	1E-6	(genus_Olsenella)	0.9290459	[0.57-1.29] unit decrease	Affymetrix [210924]	N
2030	chr3	189508301	189508302	rs1515498	32839289	Milne S	2020-08-24	Thorax	Protective effect of club cell secretory protein (CC-16) on COPD risk and progression: a Mendelian randomisation study.	Serum CC16 levels	5,552 individuals	NA	3q28	TP63	rs1515498-A	0.64	5E-10		0.069	[0.047-0.091] unit increase	Illumina [7312348] (imputed)	N
2030	chr3	189508470	189508471	rs9854771	29422604	Klein AP	2018-02-08	Nat Commun	Genome-wide meta-analysis identifies five new susceptibility loci for pancreatic cancer.	Pancreatic cancer	9,040 European ancestry cases, 12,496 European ancestry controls	up to 2,737 cases, up to 4,752 controls	3q28	TP63	rs9854771-G	0.64	5E-8		1.1111112	[1.06-1.16]	Illumina [11381182] (imputed)	N
2030	chr3	189508470	189508471	rs9854771	26098869	Childs EJ	2015-06-22	Nat Genet	Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.	Pancreatic cancer	7,638 cases, 7,364 controls	2,287 cases, 4,205 controls	3q28	TP63	rs9854771-G	0.638	2E-8		1.1235955	[1.08-1.18]	Illumina [866891] (imputed)	N
2030	chr3	189514046	189514047	rs1515495	31766143	Ortega-Azorin C	2019-11-13	Nutrients	Candidate Gene and Genome-Wide Association Studies for Circulating Leptin Levels Reveal Population and Sex-Specific Associations in High Cardiovascular Risk Mediterranean Subjects.	Circulating leptin levels in high cardiovascular risk	351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women	NA	3q28	TP63	rs1515495-?	0.13	3E-6	(model 2)	0.276	NR unit decrease	Illumina [628376]	N
2031	chr3	189534620	189534621	rs11720810	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	3q28		rs11720810-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2031	chr3	189545066	189545067	rs1515493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs1515493-T	0.05749	3E-8	(RAN)	0.07774	NR unit increase	Illumina [1671387] (imputed)	N
2031	chr3	189545066	189545067	rs1515493	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs1515493-T	0.05749	3E-8	(EIF4A1)	0.3199	NR unit increase	Illumina [1671387] (imputed)	N
2031	chr3	189553371	189553372	rs76479869	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Orofacial clefts	83 Asian ancestry cases, 1,445 Asian ancestry case-parent trios, 161 Asian ancestry controls, 208 European ancestry cases, 1,284 European ancestry case-parent trios, 835 European ancestry controls, 610 Latino or African cases, 663 Latino or African case-parent trios, 704 Latino or African controls, 35 case-parent trios.	NA	3q28	TP63	rs76479869-?	NR	3E-7		1.56	[1.27-1.93] (GENEVA cohort)	Illumina [6090031] (imputed)	N
2031	chr3	189553371	189553372	rs76479869	28054174	Leslie EJ	2017-01-04	Hum Genet	Genome-wide meta-analyses of nonsyndromic orofacial clefts identify novel associations between FOXE1 and all orofacial clefts, and TP63 and cleft lip with or without cleft palate.	Cleft lip with or without cleft palate	83 Asian ancestry cases, 1,173 Asian ancestry case-parent trios, 161 Asian ancestry controls,170 European ancestry cases, 988 European ancestry case-parent trios, 835 European ancestry controls, 570 Latino or African cases, 629 Latino or African case-parent trios, 704 Latino or African controls, 21 case-parent trios.	NA	3q28	TP63	rs76479869-?	NR	1E-8		1.79	[1.41-2.29] (GENEVA cohort)	Illumina [6090031] (imputed)	N
2031	chr3	189567427	189567428	rs181832941	30678657	Westphal S	2019-01-24	BMC Cardiovasc Disord	Genome-wide association study of myocardial infarction, atrial fibrillation, acute stroke, acute kidney injury and delirium after cardiac surgery - a sub-analysis of the RIPHeart-Study.	Postoperative stroke after cardiac surgery	17 cases, 1,089 controls	NA	3q28	TP63	rs181832941-?	NR	4E-7	(adjusted for atrial fibrillation, delirium, myocardial infarction and renal failure)	100.0	[16.67-?]	Illumina [9007469] (imputed)	N
2031	chr3	189600159	189600160	rs12107036	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	3q28	TP63	rs12107036-?	NR	2E-6	(Hispanic)	1.3888888	[1.2-1.59]	Illumina [at least 5000000] (imputed)	N
2031	chr3	189615474	189615475	rs28512356	26626624	Stuart PE	2015-11-28	Am J Hum Genet	Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture.	Psoriasis vulgaris	4,007 European ancestry cases, 4,934 European ancestry controls	up to 9,075 European ancestry cases, up to European ancestry 12,726 controls	3q28	TP63	rs28512356-C	NR	3E-6		1.187	NR	Illumina [up to 11532644] (imputed)	N
2031	chr3	189615474	189615475	rs28512356	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	3q28	TP63	rs28512356-C	0.799	8E-6		1.1	[1.06-1.15]	Illumina [up to 4778154] (imputed)	N
2031	chr3	189615474	189615475	rs28512356	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	3q28	TP63	rs28512356-C	0.799	4E-8	(EA)	1.17	[1.11-1.24]	Illumina [up to 4778154] (imputed)	N
2031	chr3	189620252	189620253	rs13063162	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	3q28		rs13063162-A	NR	5E-7		1.1644	NR	Affymetrix [7846216] (imputed)	N
2031	chr3	189645932	189645933	rs710521	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	3q28	TP63	rs710521-A	0.73	2E-11		1.14	[1.10-1.19]	Illumina [462190]	N
2031	chr3	189645932	189645933	rs710521	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	3q28	TP63	rs710521-A	0.73	2E-10		1.18	[1.12-1.24]	Illumina [589299]	N
2031	chr3	189645932	189645933	rs710521	20348956	Kiemeney LA	2010-03-28	Nat Genet	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	3q28	TP63	rs710521-A	0.73	6E-8		1.19	[1.12-1.27]	Illumina [304703]	N
2031	chr3	189645932	189645933	rs710521	18794855	Kiemeney LA	2008-09-14	Nat Genet	Sequence variant on 8q24 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,803 European ancestry cases, 34,336 European ancestry controls	2,165 European ancestry cases, 3,800 European ancestry controls	3q28	TP63	rs710521-A	0.73	1E-7		1.19	[1.12-1.27]	Illumina [302140]	N
2032	chr3	189713487	189713488	rs1522931	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q28	NR	rs1522931-T	0.474431	2E-16				Affymetrix, Illumina [24588908] (imputed)	N
2032	chr3	189714530	189714532	rs10535297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q28	LEPREL1	rs10535297-A	0.477776	3E-11		0.015025783	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2032	chr3	189721699	189721700	rs4686534	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q28	LEPREL1	rs4686534-A	0.216912	3E-17		0.023036644	[0.018-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2032	chr3	189723469	189723470	rs9864965	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q28		rs9864965-T	NR	4E-11		0.0133	[0.0094-0.0172] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2032	chr3	189735460	189735461	rs9835230	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (hip)	36,445 European ancestry cases, 316,943 European ancestry controls	NA	3q28		rs9835230-A	0.2433	1E-9		1.0658792	[1.044167981-1.08804186]	Affymetrix, Illumina [NR] (imputed)	N
2032	chr3	189742968	189742968	rs72439195	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3q28	NR	rs72439195-?	NR	4E-8		3.83	[3-4.89]	Illumina [539000] (imputed)	N
2032	chr3	189770597	189770598	rs7632740	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q28	TP63	rs7632740-?	NR	9E-6	(xanthosine)	0.15217455	[0.085-0.22] unit increase	Affymetrix [at least 2500000] (imputed)	N
2032	chr3	189774455	189774456	rs9882792	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	3q28	NR	rs9882792-T	0.2218	2E-6	(EA)	0.0377	[0.022-0.053] unit decrease	Illumina [~ 11800000] (imputed)	N
2033	chr3	189800759	189800760	rs139199585	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q28	LEPREL1	rs139199585-G	0.066422	2E-9		0.02801322	[0.019-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
2033	chr3	189802438	189802439	rs187369228	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (septal defects)	1,074 European ancestry cases, 8,486 European ancestry controls	NA	3q28	P3H2	rs187369228-?		2E-8	(atrial septal defect type II)	2.97	[2.03-4.35]	Affymetrix, Illumina [9216527] (imputed)	N
2033	chr3	189807631	189807632	rs6787151	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs6787151-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2033	chr3	189821682	189821683	rs3106806	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	3q28	LEPREL1	rs3106806-C	0.0398	3E-6		1.2707	[0.74-1.81] unit decrease	Illumina [9520174] (imputed)	N
2033	chr3	189822089	189822090	rs2030571	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 16)	2,187 European ancestry individuals	NA	3q28	NR	rs2030571-T	0.058	2E-6		0.3081	[0.18-0.43] unit increase	Illumina [10677593] (imputed)	N
2033	chr3	189836435	189836436	rs13319406	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	3q28	LEPREL1	rs13319406-G	NR	2E-6	(men)	0.0324478	[0.019-0.046] unit increase	Illumina [13520550] (imputed)	N
2033	chr3	189902493	189902494	rs698115	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q28	NR	rs698115-T	0.466483	8E-9		0.0178364	[0.012-0.024] unit increase	NR [19129689] (imputed)	N
2033	chr3	189922818	189922819	rs151178999	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,931 Sub-Saharan African ancestry males	NA	3q28		rs151178999-G	0.978352	4E-6		0.04136	[0.023-0.06] unit decrease	Illumina [13900000] (imputed)	N
2034	chr3	189963240	189963241	rs117143670	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q28	Intergenic	rs117143670-?		7E-6		1.13	[1.07-1.20]	Illumina [7645193] (imputed)	N
2034	chr3	189963240	189963241	rs117143670	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	3q28	Intergenic	rs117143670-?		5E-6		3.45	[2.03-5.86]	Illumina [7645193] (imputed)	N
2034	chr3	189969371	189969372	rs9852867	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	3q28	intergenic	rs9852867-T	0.30	4E-6		0.0625	[0.036-0.089] unit increase	Illumina [6380737] (imputed)	N
2034	chr3	189969371	189969372	rs9852867	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (unclassified genus belonging to family Ruminococcaceae)	1,068 Japanese ancestry individuals	NA	3q28	intergenic	rs9852867-T	0.30	2E-6	(female)	0.091	[0.054-0.128] unit increase	Illumina [6380737] (imputed)	N
2034	chr3	189969371	189969372	rs9852867	31809533	Han X	2019-09-06	Hum Mol Genet	Genome-wide association analysis of 95 549 individuals identifies novel loci and genes influencing optic disc morphology.	Optic disc size	67,040 British ancestry individuals	28,509 European ancestry individuals	3q28	CLDN1	rs9852867-T	0.41	3E-8		0.01	unit decrease	Affymetrix [8928767] (imputed)	N
2034	chr3	189997395	189997396	rs16865258	21107309	McClay JL	2010-11-24	Neuropsychopharmacology	Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.	Response to antipsychotic treatment in schizophrenia (working memory)	738 European ancestry, African American, and other ancestry cases	NA	3q28	CLDN1	rs16865258-?	0.02	2E-6	(quetiapine)			Affymetrix [492900]	N
2034	chr3	190004309	190004310	rs144596911	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	1,245 European ancestry individuals	NA	3q28	intergenic	rs144596911-A	0.09	3E-6		3.6	[2.11-6.17]	NR [~ 38000000] (imputed)	N
2035	chr3	190164839	190164840	rs78113860	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	3q28		rs78113860-G	0.060715268	9E-6		0.02666848	[0.015-0.038] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
2036	chr3	190252634	190252635	rs9290936	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Waist circumference	1,779 Filipino ancestry females	NA	3q28	IL1RAP	rs9290936-G	0.61	4E-6		1.79	[1.03-2.55] cm increase	Affymetrix [2073674] (imputed)	N
2036	chr3	190287161	190287162	rs9811674	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q28	IL1RAP	rs9811674-G	0.1023069	5E-11	(EA, Interleukin-1 Receptor accessory protein)	0.4315	[0.3-0.56] unit increase	Affymetrix [509946]	N
2036	chr3	190300003	190300004	rs12053868	26268530	Ramanan VK	2015-08-11	Brain	GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer's disease implicates microglial activation gene IL1RAP.	Longitudinal change in brain amyloid plaque burden	41 European ancestry Alzheimer's disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals	NA	3q28	IL1RAP	rs12053868-G	0.12	1E-9		0.84	[0.57-1.11] unit increase	Illumina [6112217] (imputed)	N
2036	chr3	190313506	190313507	rs2193873	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q28	IL1RAP	rs2193873-G	0.4974925	2E-17	(EA, Interleukin-1 Receptor accessory protein)	0.3342	[0.26-0.41] unit increase	Affymetrix [509946]	N
2037	chr3	190332092	190332093	rs3796293	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RAP	5,365 Icelandic ancestry individuals	NA	3q28		rs3796293-G	0.3136	7E-195		0.567553	[0.53-0.6] unit increase	Illumina [7506463] (imputed)	N
2037	chr3	190332092	190332093	rs3796293	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RAP	5,355 Icelandic ancestry individuals	NA	3q28		rs3796293-G	0.3136	5E-203		0.557355	[0.52-0.59] unit increase	Illumina [7506463] (imputed)	N
2037	chr3	190345098	190345099	rs34908328	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q28	IL1RAP	rs34908328-G	0.84	8E-720	(Interleukin-1 Receptor accessory protein, IL1RAP.2630.12.2)	1.39	[1.35-1.43] unit decrease	Affymetrix [10572788] (imputed)	N
2037	chr3	190346059	190346060	rs6444442	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q28	IL1RAP	rs6444442-G	0.841	1E-656	(Interleukin-1 Receptor accessory protein, IL1RAP.14048.7.3)	1.35	[1.31-1.39] unit decrease	Affymetrix [10572788] (imputed)	N
2037	chr3	190346230	190346231	rs6444444	29234017	Carayol J	2017-12-12	Nat Commun	Protein quantitative trait locus study in obesity during weight-loss identifies a leptin regulator.	Protein levels in obesity	494 European ancestry individuals	NA	3q28	NR	rs6444444-?	NR	5E-66	(IL-1 R AcP)	0.66	[0.58-0.74] unit increase	Illumina [4020654] (imputed)	N
2037	chr3	190346701	190346702	rs1024943	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	3q28	NR	rs1024943-?	NR	1E-119	(IL-1 R AcP)			Illumina [~ 4000000] (imputed)	N
2037	chr3	190347680	190347681	rs1024948	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q28	IL1RAP, GCNT1P3	rs1024948-C	0.1330321	3E-165	(Interleukin-1 Receptor accessory protein)	1.352	[1.27-1.43] unit increase	Affymetrix [509946]	N
2037	chr3	190348809	190348810	rs724608	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	3q28	NR	rs724608-?	NR	1E-143	(EA, Interleukin-1 Receptor accessory protein)			Affymetrix [509946]	N
2037	chr3	190349077	190349078	rs724609	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q28	IL1RAP	rs724609-A	0.8646875	2E-567	(IL1RAP, 14048_7_3)	1.5189636	[1.47-1.57] unit decrease	Illumina [> 1000000] (imputed)	N
2037	chr3	190349077	190349078	rs724609	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q28	IL1RAP	rs724609-A	0.8646875	2E-481	(IL1RAP, 2630_12_2)	1.4446067	[1.39-1.49] unit decrease	Illumina [> 1000000] (imputed)	N
2037	chr3	190350460	190350461	rs7626795	18385676	Amos CI	2008-04-03	Nat Genet	Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1.	Lung cancer	1,154 European ancestry cases, 1,137 European ancestry controls	2,724 European ancestry cases, 3,694 European ancestry controls	3q28	IL1RAP	rs7626795-G	NR	8E-6		1.16	[1.05-1.28]	Illumina [317498]	N
2037	chr3	190356361	190356362	rs73201852	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q28		rs73201852-?	NR	8E-9				Affymetrix [NR] (imputed)	N
2037	chr3	190357570	190357571	rs67249092	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RAP	5,355 Icelandic ancestry individuals	NA	3q28		rs67249092-G	0.1682	3E-69		0.413653	[0.37-0.46] unit decrease	Illumina [7506463] (imputed)	N
2037	chr3	190363593	190363594	rs34879831	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IL1RAP	5,365 Icelandic ancestry individuals	NA	3q28		rs34879831-A	0.1715	3E-65		0.412856	[0.37-0.46] unit decrease	Illumina [7506463] (imputed)	N
2037	chr3	190363593	190363594	rs34879831	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q28	NR	rs34879831-A	0.164	3E-32	(Interleukin-1 Receptor accessory protein, IL1RAP.2630.12.2)	0.4	[0.34-0.46] unit decrease	Affymetrix [10572788] (imputed)	N
2037	chr3	190408513	190408514	rs73184208	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q28		rs73184208-?	NR	5E-9				Affymetrix [NR] (imputed)	N
2037	chr3	190415988	190415989	rs62286275	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	3q28		rs62286275-?	NR	6E-9				Affymetrix [NR] (imputed)	N
2038	chr3	190514434	190514435	rs13082927	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip	15 Asian ancestry cases, 13 European ancestry cases, 15 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	3q28	NR	rs13082927-?	NR	3E-6		3.53	[2.71-4.59]	Illumina [539000] (imputed)	N
2038	chr3	190525515	190525516	rs9870207	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Low-grade serous and serous borderline ovarian cancer	2,966 European ancestry cases, 40,941 European ancestry controls	NA	3q28	NR	rs9870207-A	0.691354	5E-8		1.1929355	[1.11921837700174-1.27150779447142]	Illumina [11595112] (imputed)	N
2038	chr3	190525515	190525516	rs9870207	28346442	Phelan CM	2017-03-27	Nat Genet	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.	Epithelial ovarian cancer	16,924 European ancestry cases, 68,502 European ancestry controls	NA	3q28	NR	rs9870207-A	0.691354	3E-6		1.0994674	[1.05569458307584-1.14505523813592]	Illumina [11595112] (imputed)	N
2039	chr3	190595256	190595257	rs13322873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3q28	NR	rs13322873-?		3E-40				NR [7428630] (imputed)	N
2039	chr3	190595256	190595257	rs13322873	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q28	POGK, TADA1, ILDR2, MAEL	rs13322873-?		2E-40				NR [7428630] (imputed)	N
2039	chr3	190602086	190602087	rs9818981	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Nucleus accumbens volume	32,562 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	3q28	NR	rs9818981-A	0.0902	7E-10		6.163	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
2039	chr3	190613449	190613450	rs13075101	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (MOSTest)	26,502 European ancestry individuals	NA	3q28	TBX15, WARS2	rs13075101-?		6E-10				NR [7428630] (imputed)	N
2039	chr3	190620145	190620146	rs34113929	30258056	Vojinovic D	2018-09-26	Nat Commun	Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume.	Lateral ventricular volume in normal aging	22,045 European ancestry individuals, 1,488 African American individuals	NA	3q28	SNAR-I, OSTN	rs34113929-A	0.41	1E-16		8.27	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
2039	chr3	190636748	190636749	rs61500084	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs61500084-?	NR	5E-16	(right lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190636748	190636749	rs61500084	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs61500084-?	NR	1E-12	(left lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190640154	190640155	rs4308325	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (min-P)	26,502 European ancestry individuals	NA	3q28	NR	rs4308325-?		8E-12				NR [7428630] (imputed)	N
2039	chr3	190640633	190640634	rs56234707	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	3q28	NR	rs56234707-?		2E-10	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190640662	190640663	rs12488471	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs12488471-?		2E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190641108	190641109	rs12727448	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical thickness (min-P)	26,502 European ancestry individuals	NA	3q28	LACTBL1, C1orf234, KDM1A, LUZP1, HTR1D	rs12727448-?		3E-8				NR [7428630] (imputed)	N
2039	chr3	190641108	190641109	rs12727448	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs12727448-?		2E-22	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190642427	190642428	rs187620717	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Lateral thalamic nuclei volume	30,114 white British ancestry individuals			GMNC	rs187620717-G	0.3803	3E-10		0.0533112	[0.037-0.07] unit increase	Affymetrix [8165723] (imputed)	N
2039	chr3	190642427	190642428	rs187620717	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA		NR	rs187620717-?		3E-8	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
2039	chr3	190642427	190642428	rs187620717	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA		NR	rs187620717-?		5E-10	(Posterior limb of internal capsule)			NR [8955960] (imputed)	N
2039	chr3	190647186	190647187	rs13066753	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q28		rs13066753-T	0.4	1E-77		18.66	z score increase	Affymetrix [9061022] (imputed)	N
2039	chr3	190647186	190647187	rs13066753	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q28	NR	rs13066753-T	0.3879	1E-17				NR [9056863] (imputed)	N
2039	chr3	190647186	190647187	rs13066753	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q28	NR	rs13066753-T	0.3879	1E-17				NR [9056863] (imputed)	N
2039	chr3	190647186	190647187	rs13066753	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs13066753-?	NR	1E-11	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs7616662-?	NR	6E-10	(left inferior lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs7616662-?	NR	5E-13	(right lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs7616662-?	NR	3E-9	(left lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs7616662-?		2E-12	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs7616662-?		4E-14	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (fractional anisotropy)	17,706 European ancestry individuals	NA	3q28	NR	rs7616662-?		7E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190647580	190647581	rs7616662	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs7616662-?		2E-13	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190652829	190652830	rs34859790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q28		rs34859790-T	0.4	1E-128		24.13	z score increase	Affymetrix [9061022] (imputed)	N
2039	chr3	190652829	190652830	rs34859790	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q28		rs34859790-T	0.4	1E-71		17.9	z score increase	Affymetrix [9061022] (imputed)	N
2039	chr3	190654423	190654424	rs13089287	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs13089287-?	NR	9E-9	(X3rd ventricle)			NR [9227495] (imputed)	N
2039	chr3	190655514	190655515	rs1909960	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q28	KCNK3, SLC35F6, CENPA, DPYSL5, MAPRE3, TMEM214, AGBL5, OST4, EMILIN1, KHK, CGREF1, ABHD1, PREB, C2orf53, TCF23	rs1909960-?		2E-64				NR [7428630] (imputed)	N
2039	chr3	190655514	190655515	rs1909960	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q28	GMNC	rs1909960-?		1E-72				NR [7428630] (imputed)	N
2039	chr3	190657162	190657163	rs1316356	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Medial thalamic nuclei volume	30,114 white British ancestry individuals			GMNC	rs1316356-C	0.3796	8E-15		0.065614	[0.049-0.082] unit increase	Affymetrix [8165723] (imputed)	N
2039	chr3	190657359	190657360	rs905124	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q28	NR	rs905124-A	0.3605	4E-13	(Precuneus)	17.112389	[12.5-21.73] unit increase	Affymetrix, Illumina [NR]	N
2039	chr3	190657741	190657743	rs147817028	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal P-tau181p levels	3,146 individuals	NA	3q28	GMNC, SNAR-I, OSTN	rs147817028-?	0.358	6E-10		0.035	[0.023-0.047] unit increase	Illumina [7358575] (imputed)	N
2039	chr3	190663556	190663557	rs35055419	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical volume	22,824 European and African American ancestry individuals	NA	3q28	OSTN	rs35055419-?		2E-10	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
2039	chr3	190663556	190663557	rs35055419	28247064	Deming Y	2017-02-28	Acta Neuropathol	Genome-wide association study identifies four novel loci associated with Alzheimer's endophenotypes and disease modifiers.	Cerebrospinal T-tau levels	3,146 individuals	NA	3q28	GMNC, SNAR-I, OSTN	rs35055419-C	0.357	3E-11		0.04	[0.028-0.052] unit increase	Illumina [7358575] (imputed)	N
2039	chr3	190665479	190665479	rs66522322	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q28	NR	rs66522322-?	NR	1E-10	(right lateral ventricle)			NR [9227495] (imputed)	N
2039	chr3	190665479	190665479	rs66522322	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs66522322-?		4E-8	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190665479	190665479	rs66522322	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mean diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs66522322-?		5E-9	(Fornix (column and body))			NR [8955960] (imputed)	N
2039	chr3	190666642	190666643	rs1159211	32963231	Hofer E	2020-09-22	Nat Commun	Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults.	Cortical surface area	18,617 European and African American ancestry individuals	22,363 European ancestry individuals	3q28	SNAR-I	rs1159211-?		2E-13	(Precuneus)			Affymetrix, Illumina [NR] (imputed)	N
2039	chr3	190668849	190668862	rs138133138	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (mode of anisotropy)	17,706 European ancestry individuals	NA	3q28	NR	rs138133138-?		2E-11	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
2039	chr3	190668849	190668862	rs138133138	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (axial diusivities)	17,706 European ancestry individuals	NA	3q28	NR	rs138133138-?		2E-9	(Splenium of corpus callosum)			NR [8955960] (imputed)	N
2039	chr3	190669517	190669518	rs9877502	23562540	Cruchaga C	2013-04-04	Neuron	GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease.	Alzheimer's disease biomarkers	591 European ancestry cases, 687 European ancestry controls		3q28	UTS2D, SNAR-I, GEMC1, OSTNIL1-RAP, CCDC50	rs9877502-A	NR	5E-9	(tau)	0.052	[NR] unit increase	Illumina [5815690] (imputed)	N
2039	chr3	190670369	190670370	rs200690866	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Ventral thalamic nuclei volume	30,114 white British ancestry individuals			GMNC	rs200690866-C	0.3803	1E-13		0.0632765	[0.047-0.08] unit decrease	Affymetrix [8165723] (imputed)	N
2039	chr3	190670901	190670902	rs9811910	30818988	Klein M	2019-03-01	Am J Psychiatry	Genetic Markers of ADHD-Related Variations in Intracranial Volume.	Intracranial volume	24,024 European ancestry individuals	NA	3q28	NR	rs9811910-C	NR	2E-9		5.988	NR z score increase	NR [9186920] (imputed)	N
2039	chr3	190671056	190671057	rs34542080	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs34542080-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2039	chr3	190673126	190673127	rs35872768	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	3q28	VIT, AC007382.1, STRN, HEATR5B	rs35872768-?		4E-16				NR [7428630] (imputed)	N
2040	chr3	190733636	190733637	rs9872132	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	7,894 Sub-Saharan African ancestry individuals	NA	3q28		rs9872132-C	0.583744	7E-6		0.0087593	[0.0049-0.0126] unit decrease	Illumina [13900000] (imputed)	N
2040	chr3	190789851	190789852	rs77395168	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q28	SNAR-I, OSTN	rs77395168-?	NR	9E-12		0.0316201	[0.023-0.041] unit decrease	Illumina [27896057] (imputed)	N
2040	chr3	190819093	190819094	rs1195358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q28		rs1195358-T	NR	2E-19		0.0139	[0.011-0.017] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
2040	chr3	190819093	190819094	rs1195358	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q28		rs1195358-T	0.333604	7E-13		0.0154091	[0.011-0.02] unit increase	Illumina [13479295] (imputed)	N
2040	chr3	190819093	190819094	rs1195358	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q28	SNAR-I, OSTN	rs1195358-?	NR	6E-17		0.025472648	[0.02-0.031] unit increase	Illumina [27896057] (imputed)	N
2041	chr3	190848368	190848369	rs9855788	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs9855788-?	NR	6E-14				NR [~ 8900000] (imputed)	N
2041	chr3	190848751	190848752	rs61174036	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Dementia and core Alzheimer's disease neuropathologic changes	up to 3,887 cases, up to 1,027 controls	NA	3q28	intergenic	rs61174036-G	0.7102	9E-6	(Primary)	0.289	[0.16-0.42] unit increase	Affymetrix, Illumina [NR] (imputed)	N
2041	chr3	190858544	190858545	rs6786499	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	3q28	Intergenic	rs6786499-T	0.878	5E-6		0.8897	[0.51-1.27] unit increase	Illumina [9520174] (imputed)	N
2041	chr3	190880133	190880134	rs11922372	25903422	Yin X	2015-04-23	Nat Commun	Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.	Psoriasis	3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls	5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls	3q28	OSTN	rs11922372-C	0.22795	2E-7	(EA)	1.14	[1.08-1.19]	Illumina [up to 4778154] (imputed)	N
2041	chr3	190888562	190888563	rs73199626	27002377	Irvin MR	2016-07-01	Pharmacogenet Genomics	A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies.	Response to fenofibrate (triglyceride levels)	1,594 European ancestry individuals	350 Hispanic individuals, 138 African American individuals	3q28	SNAR-I, OSTN	rs73199626-T	0.86	8E-7	(European)	0.084	[0.045-0.123] unit decrease	Affymetrix [6982258] (imputed)	N
2042	chr3	191000807	191000808	rs10937470	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	3q28	UTS2D	rs10937470-?	NR	9E-6		0.004	[NR] unit decrease	Illumina [478011]	N
2042	chr3	191048521	191048522	rs980320	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	3q28		rs980320-A	NR	2E-9		0.0158	[0.011-0.021] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
2042	chr3	191048553	191048554	rs980321	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	3q28	NR	rs980321-G	NR	3E-10		0.018	[0.012-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
2043	chr3	191103489	191103490	rs547195	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	3q28	NR	rs547195-?	NR	3E-10				Affymetrix [~ 8270000] (imputed)	N
2043	chr3	191111159	191111160	rs9841435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q28		rs9841435-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2043	chr3	191119655	191119656	rs366403	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in never smokers	2,355 European ancestry cases,  7,504 European ancestry controls	NA	3q28	CCDC50, LINCR-0002	rs366403-A	0.038004453	7E-6		1.6124116	[1.30846138-1.986968327]	Illumina [10439017] (imputed)	N
2043	chr3	191196591	191196592	rs16822582	20889312	Wang KS	2010-10-01	Schizophr Res	A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder.	Bipolar disorder and schizophrenia	651 European ancestry bipolar cases, 1,171 European ancestry schizophrenia cases, 2,412 European ancestry controls	NA	3q28	NR	rs16822582-?	NR	8E-6		1.4994	[NR]	Affymetrix [722112]	N
2044	chr3	191323278	191323279	rs13090173	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q28	NR	rs13090173-?	NR	3E-9				Affymetrix [NR]	N
2044	chr3	191341578	191341579	rs140130327	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q28	NR	rs140130327-T	NR	8E-7		1.27	[NR]	Illumina [7158791] (imputed)	N
2045	chr3	191387123	191387124	rs528724677	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	3q28	NR	rs528724677-?	NR	3E-6		0.804223	[0.47-1.14] unit increase	NR [13958389] (imputed)	N
2045	chr3	191425854	191425855	rs1066621	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	3q28	PYDC2, FGF12	rs1066621-T	NR	3E-8	(Phosphatidylcholine with diacyl residue sum C36:0)	0.245354	[0.16-0.33] unit increase	Illumina [up to 9281895] (imputed)	N
2045	chr3	191447445	191447446	rs709082	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	3q28	Intergenic	rs709082-?	NR	1E-6		1.382	[NR]	Affymetrix [492217] (imputed)	N
2046	chr3	191520085	191520086	rs9853301	34187551	McCartney DL	2021-06-29	Genome Biol	Genome-wide association studies identify 137 genetic loci for DNA methylation biomarkers of aging.	DNA methylation GrimAge acceleration	6,148 African American individuals	NA	3q28	NR	rs9853301-G	0.9495	6E-9		1.1957	[0.79-1.6] unit increase	Affymetrix, Illumina [12989440] (imputed)	N
2046	chr3	191521851	191521852	rs1516489	22610502	Kennedy RB	2012-05-19	Hum Genet	Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.	Immune response to smallpox vaccine (IL-6)	Up to 512 European ancestry individuals, 199 African American individuals	NA	3q28	LOC100129725	rs1516489-C		8E-8	(AA)			Illumina [NR]	N
2046	chr3	191622371	191622372	rs6772767	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q28	POP2	rs6772767-?	NR	5E-6	(S adenosylhomocysteine)	3.25514	[1.86-4.65] unit increase	Affymetrix [at least 2500000] (imputed)	N
2047	chr3	191644919	191644920	rs74575151	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 3 levels	252 European ancestry individuals	NA	3q28		rs74575151-C	NR	6E-6		4.4426	[2.57-6.32] unit increase	Illumina [NR] (imputed)	N
2047	chr3	191667776	191667777	rs7635839	19721433	McClay JL	2009-09-01	Mol Psychiatry	Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics.	Response to antipsychotic treatment	494 European ancestry cases, 244 African American and other ancestry cases	NA	3q28	intergenic	rs7635839-?	NR	3E-6	(olanzapine)	9.0	[NR] % variance	Affymetrix, Perlegen [492900]	N
2047	chr3	191695112	191695113	rs4261353	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Severe influenza A (H1N1) infection	49 European ancestry severe cases, 549 European ancestry population controls	NA	3q28	FGF12	rs4261353-?	0.001866	1E-8		27.44	[4.948-152.1]	Affymetrix [547296]	N
2048	chr3	191795235	191795236	rs62288757	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Short-term memory (digit-span task)	2,591 European ancestry individuals	NA	3q28	Intergenic	rs62288757-T	0.869851429	2E-7		0.217937	[0.14-0.3] unit increase	Illumina [6952813] (imputed)	N
2048	chr3	191795235	191795236	rs62288757	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Reading ability (multivariate)	up to 3,468 European ancestry individuals	NA	3q28	NR	rs62288757-?		1E-6				Illumina [up to 6969139] (imputed)	N
2048	chr3	191818641	191818642	rs4585146	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	3q28	FGF12	rs4585146-G	0.65	6E-6	(% improvement - 2 weeks)	1.1643	[1.11-1.22]	Affymetrix, Illumina [1200000] (imputed)	N
2048	chr3	191818641	191818642	rs4585146	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	3q28	FGF12	rs4585146-A	0.362271	3E-7	(% improvement - SSRI treated - 2 weeks)	0.2208	[0.14-0.31] unit decrease	Affymetrix, Illumina [1200000] (imputed)	N
2048	chr3	191838168	191838169	rs79940520	30804558	Grove J	2019-02-25	Nat Genet	Identification of common genetic risk variants for autism spectrum disorder.	Autism spectrum disorder	18,381 European ancestry cases, 27,969 European ancestry controls	2,119 European ancestry cases, 142,379 European ancestry controls	3q28	Intergenic	rs79940520-G	0.141	9E-6		1.0893246	[NR]	Illumina [9112387] (imputed)	N
2049	chr3	191897217	191897218	rs975121	21139019	Walsh KM	2010-12-07	Endocr Relat Cancer	A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum.	Ileal carcinoids	239 European ancestry cases, 107 European ancestry controls	NA	3q28	FGF12	rs975121-?	NR	7E-6		2.17	[1.55-3.03]	Illumina [308330]	N
2049	chr3	191897770	191897771	rs11721107	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Ruminococcus belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	3q28	FGF12	rs11721107-T	0.05	2E-6		0.437	[0.26-0.62] unit increase	Illumina [6380737] (imputed)	N
2049	chr3	191912466	191912467	rs55636532	32080354	Rasmussen ER	2020-02-21	Pharmacogenomics J	Genome-wide association study of angioedema induced by angiotensin-converting enzyme inhibitor and angiotensin receptor blocker treatment.	Angioedema in response to angiotensin-converting enzyme inhibitor and/or angiotensin receptor blocker	172 European ancestry cases, 1 case, 4,890 European ancestry controls	NA	3q28	NR	rs55636532-C	0.019	2E-6		3.495	[2.077-5.883]	Illumina [7585599] (imputed)	N
2049	chr3	191912869	191912870	rs9836672	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep quality	2,315 European ancestry individuals	NA	3q28	FGF12	rs9836672-T	0.05	5E-6		0.27	[0.15-0.39] unit increase	Illumina [2380486] (imputed)	N
2049	chr3	191979366	191979367	rs138641425	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q28	FGF12	rs138641425-A	0.999	2E-6	(AA)	0.389	unit increase	Illumina [NR] (imputed)	N
2049	chr3	192017600	192017601	rs149667740	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q28	FGF12	rs149667740-G	0.999	2E-6	(AA)	0.362	unit increase	Illumina [NR] (imputed)	N
2050	chr3	192053273	192053274	rs4571187	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	3q28	FGF12	rs4571187-A	0.315	6E-6		0.0458	[0.026-0.066] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2050	chr3	192093974	192093975	rs4453795	19043545	Gieger C	2008-11-28	PLoS Genet	Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.	Metabolite levels	284 European ancestry male individuals	NA	3q28	FGF12	rs4453795-?	0.41	4E-7	(PC)			Affymetrix [187454]	N
2050	chr3	192150816	192150817	rs12107377	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q28	Intergenic	rs12107377-A	0.5168	3E-8	(MTAG)	0.0092	[0.0061-0.0123] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
2051	chr3	192179346	192179351	rs142971575	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	3q28	FGF12	rs142971575-CTTAAT	0.074	4E-6		1.05	[1.08-20.22]	Affymetrix [up to 27494467] (imputed)	N
2051	chr3	192192233	192192234	rs79765582	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs79765582-G	0.01742	3E-8	(PYCARD)	0.02018	NR unit increase	Illumina [1671387] (imputed)	N
2051	chr3	192192233	192192234	rs79765582	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q28	NR	rs79765582-G	0.01742	1E-8	(ARHGDIA)	0.1047	NR unit increase	Illumina [1671387] (imputed)	N
2051	chr3	192211684	192211685	rs28636751	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (memory) (slope of z-scores)	1,145 European ancestry individuals	NA	3q28	FGF12	rs28636751-G	0.53	1E-6		0.21	unit increase	Illumina [5600000] (imputed)	N
2051	chr3	192217730	192217731	rs6788153	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar disorder	20,352 European ancestry cases, 31,358 European ancestry controls	9,412 European ancestry cases, 137,760 European ancestry controls	3q28	FGF12	rs6788153-T	0.921	9E-6		1.09604	[1.06-1.14]	NR [9372253] (imputed)	N
2051	chr3	192270324	192270324	rs558068948	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Height	2,732 Kuwaiti ancestry individuals	NA	3q28	FGF12	rs558068948-?	NR	2E-7		5.249	NR unit decrease	Illumina [up to 1520000] (imputed)	N
2052	chr3	192325361	192325362	rs7610664	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	900 Danish ancestry dizygotic twins, 272 Danish ancestry monozygotic twins	NA	3q29	NR	rs7610664-?	NR	6E-7			[NR]	Illumina [5779266] (imputed)	N
2052	chr3	192373760	192373761	rs4687352	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q29	FGF12	rs4687352-A	0.41	1E-16		0.53	[0.41-0.65] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2052	chr3	192373760	192373761	rs4687352	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q29	FGF12	rs4687352-A	0.4012	5E-15		0.5269	[0.39-0.66] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2052	chr3	192375497	192375498	rs189326995	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	3q29	FGF12	rs189326995-C	0.999	8E-7	(AA)	0.443	unit increase	Illumina [NR] (imputed)	N
2052	chr3	192402049	192402050	rs189651013	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	3q29	FGF12	rs189651013-A	0.0074	2E-7		0.11	[0.063-0.157] unit increase	Affymetrix, Illumina [34064007] (imputed)	N
2054	chr3	192617929	192617930	rs13073466	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q29	NR	rs13073466-?	NR	7E-11	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2054	chr3	192623778	192623779	rs12485900	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	3q29		rs12485900-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2054	chr3	192627415	192627416	rs10937560	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	3q29		rs10937560-?	NR	1E-7				NR [~ 8900000] (imputed)	N
2054	chr3	192632491	192632492	rs9291034	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q29	NR	rs9291034-?	NR	7E-9	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2054	chr3	192643865	192643866	rs180928518	33594131	Donati G	2021-02-16	Sci Rep	Evidence for specificity of polygenic contributions to attainment in English, maths and science during adolescence.	Academic attainment (science)	6,089 European ancestry adolescents	NA	3q29	NR	rs180928518-G	NR	9E-6		0.418	[0.23-0.6] unit increase	Illumina [6319684] (imputed)	N
2054	chr3	192658562	192658563	rs13083046	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	3q29	NR	rs13083046-?	NR	1E-8	(cerebellar vermal lobules VIII X)			NR [9227495] (imputed)	N
2055	chr3	192721513	192721514	rs151076408	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	3q29	NR	rs151076408-G	0.01765	5E-6		0.5288	[0.3-0.76] unit increase	Illumina [10677593] (imputed)	N
2055	chr3	192746325	192746326	rs9810195	30298529	Stanaway IB	2018-10-08	Genet Epidemiol	The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype.	Shingles	3,201 European ancestry cases, 34,960 European ancestry controls, 398 African American cases, 5,922 African American controls, 756 Asian ancestry individuals	NA	3q29	TFBS	rs9810195-A	0.13	3E-9		1.26	NR	Affymetrix, Illumina [39127678] (imputed)	N
2055	chr3	192754871	192754872	rs2044585	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	HRASLS	rs2044585-?	NR	1E-6	(DAG 36:2)	0.16495948	[0.098-0.232] unit increase	Affymetrix [at least 2500000] (imputed)	N
2055	chr3	192758963	192758964	rs2367277	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Daytime nap	386,577 European ancestry individuals	NA	3q29	NR	rs2367277-A	0.4364	5E-9		1.062	[1.04-1.08]	Affymetrix, Illumina [10858887] (imputed)	N
2055	chr3	192761716	192761717	rs2367278	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	3q29	MB21D2	rs2367278-G	0.07584	9E-6	(African)			Illumina [4404269] (imputed)	N
2055	chr3	192772294	192772295	rs13068101	23728906	Byrne EM	2013-05-31	Am J Med Genet B Neuropsychiatr Genet	A genome-wide association study of sleep habits and insomnia.	Sleep time	2,322 European ancestry individuals	NA	3q29	intergenic	rs13068101-A	0.26	7E-6		8.5	[4.80-12.20] unit decrease	Illumina [2380486] (imputed)	N
2056	chr3	192879123	192879124	rs57248949	25676789	Wen CC	2015-05-01	Clin Pharmacol Ther	Genome-wide association study identifies ABCG2 (BCRP) as an allopurinol transporter and a determinant of drug response.	Serum uric acid levels in response to allopurinol in gout	1,607 European ancestry individuals, 238 East Asian individuals, 84 African American individuals, 85 Hispanic individuals, 13 individuals	NA	3q29	Intergenic	rs57248949-?		3E-6		2.3533	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2057	chr3	192999044	192999045	rs77961527	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q29	NR	rs77961527-G		2E-6		0.2242	[0.13-0.31] SD units decrease	NR [10700000] (imputed)	N
2057	chr3	193031874	193031875	rs78188075	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	3q29	ATP13A5 and ATP13A5-AS1	rs78188075-T	0.38	6E-11		0.04762		Illumina [243345]	N
2057	chr3	193056545	193056546	rs1022185975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q29		rs1022185975-A	NR	8E-9		0.1551	[0.1-0.21] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2057	chr3	193056545	193056546	rs1022185975	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	3q29		rs1022185975-A	0.00295	8E-9		0.155081	[0.1-0.21] unit increase	Illumina [13479924] (imputed)	N
2058	chr3	193077093	193077094	rs76420759	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		ATP13A5	rs76420759-?	NR	2E-10	(female)	0.471829	[NR] unit increase	Affymetrix [NR] (imputed)	N
2058	chr3	193086313	193086314	rs55918334	31960908	Nag A	2020-01-21	Hum Mol Genet	Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels.	Salivary metabolite levels	1,419 European ancestry individuals	1,000 European ancestry individuals	3q29	ATP13A5	rs55918334-G	0.53	4E-14	(creatinine)	0.305	[0.23-0.38] unit increase	Illumina [9600000] (imputed)	N
2058	chr3	193098823	193098824	rs143727003	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	3q29	ATP13A5	rs143727003-T		4E-7		0.45	[0.27-0.63] unit increase	Illumina [11789982] (imputed)	N
2058	chr3	193110793	193110794	rs143479231	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Vascular endothelial growth factor levels	7,118 Finnish ancestry individuals	NA	3q29	NR	rs143479231-G		2E-7		0.2598	[0.16-0.36] SD units increase	NR [10700000] (imputed)	N
2058	chr3	193111864	193111865	rs902192	34684477	Fujihara K	2021-09-30	Nutrients	Carrot Consumption Frequency Associated with Reduced BMI and Obesity through the SNP Intermediary rs4445711.	body mass index x pumpkin consumption interaction	6,495 Japanese ancestry males, 5,730 Japanese ancestry females	NA	3q29		rs902192-A	NR	4E-6		0.3404	[0.2-0.49] unit decrease	Illumina [285387]	N
2058	chr3	193129806	193129807	rs6763501	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	3q29	NR	rs6763501-A	0.248	1E-5	(IFNalpha_STAT4_of_Monocytes)			Illumina [5084123] (imputed)	N
2058	chr3	193130383	193130384	rs6764121	32063569	Alemany-Navarro M	2020-01-29	J Affect Disord	Exploring genetic variants in obsessive compulsive disorder severity: A GWAS approach.	Obsession score in obsessive compulsive disorder	376 Spanish ancestry individuals	NA	3q29	ATP13A4	rs6764121-?	NR	9E-6		1.1443635	NR unit decrease	Illumina [338357]	N
2058	chr3	193157591	193157592	rs115865161	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	3q29	NR	rs115865161-?	NR	3E-7		5255.7104	NR unit decrease	Illumina [2379855]	N
2058	chr3	193168844	193168845	rs62285722	34154395	Brikell I	2021-06-22	Am J Psychiatry	Genetic, Clinical, and Sociodemographic Factors Associated With Stimulant Treatment Outcomes in ADHD.	Switch to non-stimulant treatment in ADHD	1,137 European ancestry cases, 3,854 European ancestry controls	NA	3q29		rs62285722-A	0.091	4E-6		0.076	[0.045-0.107] unit increase	Illumina [6361597] (imputed)	N
2058	chr3	193188155	193188156	rs1489934	32185793	Yan J	2020-03-17	Clin Genet	A genome-wide association study identifies FSHR rs2300441 associated with follicle-stimulating hormone levels.	Follicle stimulating hormone in healthy women	708 Han Chinese ancestry individuals	NA	3q29	NR	rs1489934-A	0.0209	1E-6		1.85	[NR] unit increase	Affymetrix [3101376] (imputed)	N
2059	chr3	193202868	193202869	rs7372540	33483693	Clements CC	2021-01-22	Mol Psychiatry	Genome-wide association study of patients with a severe major depressive episode treated with electroconvulsive therapy.	Major depressive episode treated with electroconvulsive therapy	2,725 European ancestry cases, 3,290 European ancestry controls	NA	3q29	ATP13A4	rs7372540-?	NR	3E-7		1.2167	[1.14-1.29]	Illumina [NR] (imputed)	N
2059	chr3	193289548	193289549	rs7649917	31926635	Coleman JRI	2019-11-01	Biol Psychiatry	The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.	Bipolar disorder or major depressive disorder	164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls	NA	3q29	NR	rs7649917-?	NR	1E-7				NR [NR] (imputed)	N
2059	chr3	193302751	193302752	rs34023161	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q29	Intergenic	rs34023161-T	0.4691	3E-8	(MTAG)	0.0092	[0.0059-0.0125] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2059	chr3	193316704	193316705	rs9838374	27479909	Hyde CL	2016-08-01	Nat Genet	Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.	Major depressive disorder	84,847 European ancestry cases, 241,266 European ancestry controls	45,773 European ancestry cases, 106,354 European ancestry controls	3q29	OPA1	rs9838374-T	0.182843	6E-8		0.0373	[0.022-0.053] unit increase	Illumina [1220000] (imputed)	N
2059	chr3	193321114	193321115	rs11925699	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q29	Intergenic	rs11925699-A	0.4674	3E-8	(MTAG)	0.0073	[0.0048-0.0098] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2060	chr3	193334845	193334846	rs7646539	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals, 43,861 East Asian ancestry individuals	NA	3q29		rs7646539-A	0.59	1E-8		0.07	unit decrease	Illumina [2093892] (imputed)	N
2060	chr3	193334845	193334846	rs7646539	34050765	Zhang L	2021-05-29	J Clin Endocrinol Metab	Joint genome-wide association analyses identified 49 novel loci for age at natural menopause.	Age at menopause	181,219 European ancestry individuals	NA	3q29		rs7646539-A	0.59	3E-8		0.08	unit decrease	Illumina [2398641] (imputed)	N
2060	chr3	193344954	193344955	rs9291059	29292387	Turley P	2018-01-01	Nat Genet	Multi-trait analysis of genome-wide association summary statistics using MTAG.	Depressive symptoms (MTAG)	354,862 European ancestry individuals	NA	3q29	NR	rs9291059-T	0.9228	5E-8		0.0219	[0.014-0.03] unit decrease	Illumina [NR] (imputed)	N
2060	chr3	193362376	193362377	rs528908640	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Diastolic blood pressure	19,546 British ancestry individuals from 6863 families.	NA	3q29	OPA1	rs528908640-C	5.0E-4	2E-8		14.669373	[9.55-19.79] mmHg increase	Illumina [24111857] (imputed)	N
2060	chr3	193394494	193394495	rs2935303	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	3q29	Intergenic	rs2935303-T	0.5284	2E-8		0.0127	[0.0082-0.0172] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2060	chr3	193394724	193394725	rs185566659	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Number of decayed, missing and filled tooth surfaces or use of dentures	14,976 European ancestry individuals with decayed, missing or filled tooth surface measurement, 11,816 Hispanic/Latino individuals with decayed, missing or filled tooth surface measurement, 77,714 European ancestry dentures cases, 383,317 European ancestry controls	NA	3q29	OPA1	rs185566659-A	0.032	2E-9		0.045	[0.03-0.06] unit increase	Affymetrix, Illumina [~ 8900000] (imputed)	N
2060	chr3	193394724	193394725	rs185566659	31235808	Shungin D	2019-06-24	Nat Commun	Genome-wide analysis of dental caries and periodontitis combining clinical and self-reported data.	Dentures	77,714 European ancestry cases, 383,317 European ancestry controls	NA	3q29	OPA1	rs185566659-A	0.032	1E-9		0.099	[0.068-0.13] unit increase	Affymetrix [at least 8900000] (imputed)	N
2060	chr3	193460069	193460070	rs58341733	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	3q29	OPA1	rs58341733-G	0.9031	6E-6		1.2693	[1.1662-1.3724]	Illumina [8567708] (imputed)	N
2061	chr3	193478955	193478956	rs7634143	30705256	Koshimizu H	2019-01-31	Transl Psychiatry	Genome-wide association study identifies a novel locus associated with psychological distress in the Japanese population.	Psychological distress	3,981 Japanese ancestry cases, 6,349 Japaneses ancestry controls	NA	3q29	NR	rs7634143-C	0.903	4E-6		1.2755	[1.17-1.38]	Illumina [8567708] (imputed)	N
2061	chr3	193482656	193482657	rs55888898	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Spirillospora abundance in stool	5,959 Finnish ancestry individuals	NA	3q29		rs55888898-G	0.213497	3E-8		0.0283801	[0.018-0.038] unit decrease	Illumina [7980478] (imputed)	N
2061	chr3	193495154	193495155	rs6444746	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Balding type 1	approximately 208,000 European ancestry individuals	NA	3q29		rs6444746-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2061	chr3	193495154	193495155	rs6444746	26584805	Dorajoo R	2015-11-19	Genes Nutr	A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.	Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)	717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls	NA	3q29	NR	rs6444746-G	0.7224	1E-6		0.1213	[0.072-0.17] unit decrease	Illumina [up to 1980188] (imputed)	N
2061	chr3	193508567	193508568	rs1697354	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 2)	19,670 European ancestry individuals	NA	3q29		rs1697354-?	NR	2E-8				NR [9705931] (imputed)	N
2061	chr3	193511569	193511570	rs1797849	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	3q29	NR	rs1797849-C	0.0961909	1E-13		0.0387853	[0.028-0.049] unit increase	NR [19129689] (imputed)	N
2061	chr3	193515780	193515781	rs687610	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q29	NR	rs687610-G	0.4273	1E-9				NR [9056863] (imputed)	N
2061	chr3	193515780	193515781	rs687610	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q29	NR	rs687610-G	0.4273	7E-17				NR [9056863] (imputed)	N
2061	chr3	193517596	193517597	rs658904	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q29		rs658904-G	0.45	4E-12		6.93	z score increase	Affymetrix [9061022] (imputed)	N
2061	chr3	193517596	193517597	rs658904	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	3q29	NR	rs658904-?		5E-8				NR [7428630] (imputed)	N
2061	chr3	193536819	193536820	rs1165645	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	3q29	NR	rs1165645-A	0.6007	3E-11	(Rostral Middle Frontal)	24.068504	[16.96-31.18] unit increase	Affymetrix, Illumina [NR]	N
2061	chr3	193537990	193537991	rs1165640	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Smoking cessation in chronic obstructive pulmonary disease	1,907 European ancestry former smoker cases, 1,164 European ancestry current smoker cases	NA	3q29	intergenic	rs1165640-C	0.1	9E-6		1.56		Illumina [~ 6300000] (imputed)	N
2061	chr3	193539119	193539120	rs1165639	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	3q29		rs1165639-?	NR	5E-9				NR [~ 8900000] (imputed)	N
2061	chr3	193544358	193544359	rs555925	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	3q29	NR	rs555925-T	0.4089	4E-10		6.25	NR z score increase	Affymetrix, Illumina [NR] (imputed)	N
2061	chr3	193546237	193546238	rs6444749	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	3q29	COL11A1	rs6444749-?		1E-9				NR [7428630] (imputed)	N
2061	chr3	193546237	193546238	rs6444749	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	3q29	VIT, AC007382.1, STRN, HEATR5B	rs6444749-?		1E-9				NR [7428630] (imputed)	N
2061	chr3	193546237	193546238	rs6444749	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (min-P)	26,502 European ancestry individuals	NA	3q29	RALGPS2, ANGPTL1	rs6444749-?		3E-9				NR [7428630] (imputed)	N
2061	chr3	193567515	193567516	rs7629215	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	32 Japanese ancestry rapid joint destruction individuals, 208 Japanese ancestry slow joint destruction individuals	NA	3q29	LOC105374287	rs7629215-?	NR	2E-6			NR	Illumina [up to 317503]	N
2061	chr3	193567515	193567516	rs7629215	33585033	Hayashi S	2021-01-29	Biomed Rep	A genome-wide association study identifying the SNPs predictive of rapid joint destruction in patients with rheumatoid arthritis.	joint destruction in rheumatoid arthritis (rapid vs slow)	30 Japanese ancestry rapid joint destruction individuals, 198 Japanese ancestry slow joint destruction individuals	NA	3q29	LOC105374287	rs7629215-?	NR	5E-6			NR	Illumina [up to 317503]	N
2061	chr3	193571839	193571840	rs12497385	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	3q29	LOC105374287	rs12497385-?	NR	8E-6		1.9607843		Illumina [983392]	N
2061	chr3	193580989	193580989	rs200355458	28763065	Xia K	2017-08-01	Transl Psychiatry	Genome-wide association analysis identifies common variants influencing infant brain volumes.	Brain volume in infants (grey matter)	295 European, African American, Asian, Native American and other admixed ancestry infants, 17 European, African American, Asian, Native American and other admixed ancestry sibling pairs, 116 European, African American, Asian, Native American and other admixed ancestry twin pairs.	NA	3q29	OPA1	rs200355458-C	NR	1E-7		1.91	percent increase	Affymetrix [8762422] (imputed)	N
2061	chr3	193583709	193583710	rs604222	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	3q29	intergenic	rs604222-A	0.1915251	7E-6	(% improvement - SSRI treated - 2 weeks)	0.2173	[0.12-0.31] unit increase	Affymetrix, Illumina [1200000] (imputed)	N
2062	chr3	193661074	193661075	rs74376508	28754779	Rosendahl J	2017-07-28	Gut	Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis.	Alcoholic chronic pancreatitis	1,959 European ancestry cases, 1,488 European ancestry alcohol abuse controls, 4,552 European ancestry controls	NA	3q29	HES1, OPA1	rs74376508-?		5E-6		1.417635	[1.23-1.60]	Illumina [9389922] (imputed)	N
2062	chr3	193682970	193682971	rs9828253	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	3q29	LOC647323	rs9828253-C	0.07	7E-6		116.488045	[65.78-167.2] kcal/day decrease	Affymetrix [491265]	N
2062	chr3	193697109	193697110	rs9855415	26343869	Xie G	2015-09-05	Atherosclerosis	Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.	Carotid intima media thickness	810 Chinese ancestry individuals	NA	3q29	LOC647323	rs9855415-?	NR	3E-6	(Multiple-adjusted)			Illumina [32817]	N
2062	chr3	193706018	193706019	rs1388100	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	3q29	NR	rs1388100-?	NR	5E-33				Affymetrix [NR]	N
2062	chr3	193722329	193722330	rs724767	23518928	Liu M	2013-03-21	Mol Endocrinol	TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.	Estradiol plasma levels (breast cancer)	700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases	NA	3q29	NR	rs724767-?	0.115	2E-6		1.436	[1.241-1.663] unit increase	Illumina [563945]	N
2062	chr3	193724243	193724244	rs138177472	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	3q29	NR	rs138177472-C	1.0	1E-6		1.01	[-1.0088-3.0288]	Affymetrix [at least 143006] (imputed)	N
2063	chr3	193727512	193727513	rs62288215	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q29	AC024559.1	rs62288215-A	0.6078	2E-9		0.0116	[0.0079-0.0153] unit increase	Affymetrix [18391927] (imputed)	N
2063	chr3	193736372	193736373	rs7635879	25475840	Colodro-Conde L	2014-12-05	Twin Res Hum Genet	A twin study of breastfeeding with a preliminary genome-wide association scan.	Breastfeeding duration	1,521 mothers from 1,073 families	NA	3q29	DPPA2P3, LOC647323	rs7635879-?	NR	6E-6		0.176	[0.100-0.252] unit increase	Illumina [6590000] (imputed)	N
2063	chr3	193799548	193799549	rs4686671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q29		rs4686671-T	0.264505	2E-9		0.015077497	[0.01-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
2063	chr3	193799548	193799549	rs4686671	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q29		rs4686671-T	0.2645	2E-10		0.015906364	[0.011-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q29		rs7642977-T	0.34	2E-27		10.83	z score increase	Affymetrix [9061022] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	3q29		rs7642977-T	0.34	7E-27		10.73	z score increase	Affymetrix [9061022] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	3q29		rs7642977-T	NR	4E-8		0.0106	[0.0069-0.0143] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q29		rs7642977-T	NR	1E-11		0.0141	[0.01-0.0182] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	3q29	NR	rs7642977-T	0.3051	1E-17				NR [9056863] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs7642977-T	0.398134	3E-12				Affymetrix, Illumina [24653286] (imputed)	N
2063	chr3	193810749	193810750	rs7642977	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q29	NR	rs7642977-T	0.307998	4E-11		0.013276	[0.0093-0.0172] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2063	chr3	193811167	193811168	rs9823161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q29		rs9823161-G	NR	1E-16		0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2063	chr3	193811167	193811168	rs9823161	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	3q29	LINC02028	rs9823161-A	0.577	1E-11		0.0022	[0.0014-0.003] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
2063	chr3	193811167	193811168	rs9823161	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	3q29	LINC02028	rs9823161-A	0.577	7E-6		0.0036	[0.002-0.0052] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
2063	chr3	193811457	193811458	rs60179514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs60179514-G	0.394232	1E-11				Affymetrix, Illumina [24558453] (imputed)	N
2063	chr3	193811457	193811458	rs60179514	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q29	NR	rs60179514-G	0.306813	1E-10		0.012982	[0.009-0.0169] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2063	chr3	193811457	193811458	rs60179514	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs60179514-?	NR	5E-10				NR [~ 8900000] (imputed)	N
2063	chr3	193816777	193816778	rs10933714	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q29	LINC02028	rs10933714-T	0.5232	3E-9		5.942	NR z score decrease	Illumina [26237160] (imputed)	N
2064	chr3	193875836	193875837	rs150362834	32473944	Russell AE	2020-05-28	Brain Behav Immun	Investigating evidence for a causal association between inflammation and self-harm: A multivariable Mendelian Randomisation study.	Deliberate self-harm	6,711 European ancestry cases, 146,849 European ancestry controls	NA	3q29	NR	rs150362834-C	1.0	2E-6		1.07	[-0.988-3.128]	Affymetrix [at least 143006] (imputed)	N
2064	chr3	193916180	193916181	rs59381142	32769997	Zhou W	2020-08-07	Nat Commun	GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.	Thyroid stimulating hormone levels	119,715 European ancestry individuals	NA	3q29	HES1, LINC02036	rs59381142-A	0.243378821426768	9E-26		0.0588	[0.048-0.07] SD decrease	Illumina [22400000] (imputed)	N
2064	chr3	193916180	193916181	rs59381142	30367059	Teumer A	2018-10-26	Nat Commun	Genome-wide analyses identify a role for SLC17A4 and AADAT in thyroid hormone regulation.	Thyroid stimulating hormone levels	54,288 European ancestry individuals	up to 22,383 European ancestry individuals	3q29	HES1	rs59381142-A	0.24	4E-15		0.054	[0.04-0.068] unit decrease	Affymetrix, Illumina [8048941] (imputed)	N
2064	chr3	193918847	193918848	rs12493688	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Goiter	2,711 European ancestry cases, 456,942 European ancestry controls, 1,127 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	3q29		rs12493688-G	NR	3E-9		0.169	[0.11-0.22] unit increase	Affymetrix, Illumina [25841617] (imputed)	N
2064	chr3	193921559	193921560	rs4687530	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	3q29	NR	rs4687530-?	NR	1E-6		0.0084154	[0.005-0.0118] unit decrease	Affymetrix [805426] (imputed)	N
2065	chr3	194024421	194024422	rs76360377	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00887	rs76360377-?	NR	4E-11		2.05535	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2065	chr3	194027567	194027568	rs10933728	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	3q29	LINC00887	rs10933728-G	0.03	6E-6	(European)	7.0		Illumina [7993459] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HS3ST1	5,357 Icelandic ancestry individuals	NA	3q29		rs6809081-C	0.379	9E-16		0.155807	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HAAO	5,350 Icelandic ancestry individuals	NA	3q29		rs6809081-C	0.379	2E-288		0.603359	[0.57-0.64] unit increase	Illumina [7506463] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein AAGAB	5,365 Icelandic ancestry individuals	NA	3q29		rs6809081-C	0.379	5E-147		0.484826	[0.45-0.52] unit increase	Illumina [7506463] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs6809081-C	0.423	4E-237	(Apolipoprotein L1, APOL1.9506.10.3)	0.73	[0.69-0.77] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs6809081-C	0.423	4E-222	(3-hydroxyanthranilate 3,4-dioxygenase, HAAO.5861.78.3)	0.71	[0.67-0.75] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs6809081-C	0.423	1E-21	(Cell growth regulator with EF hand domain protein 1, CGREF1.6257.56.3)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs6809081-C	0.423	1E-20	(Tyrosine-protein kinase JAK2, JAK2.4998.50.2)	0.24	[0.18-0.3] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194060474	194060475	rs6809081	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs6809081-C	0.423	1E-12	(Protocadherin alpha-7, PCDHA7.8758.2.3)	0.18	[0.12-0.24] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194061042	194061043	rs1048996	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein A4GNT	5,366 Icelandic ancestry individuals	NA	3q29		rs1048996-A	0.436	1E-13		0.143613	[0.11-0.18] unit increase	Illumina [7506463] (imputed)	N
2065	chr3	194061577	194061578	rs11713634	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	TNF-related activation-induced cytokine levels	21,758 European ancestry individuals	9,173 individuals	3q29		rs11713634-A	0.29	4E-14		0.1011	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2065	chr3	194061825	194061826	rs11711157	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VWA2	5,366 Icelandic ancestry individuals	NA	3q29		rs11711157-T	0.2295	2E-45		0.313768	[0.27-0.36] unit decrease	Illumina [7506463] (imputed)	N
2065	chr3	194061825	194061826	rs11711157	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPN2	5,363 Icelandic ancestry individuals	NA	3q29		rs11711157-T	0.2295	2E-77		0.404523	[0.36-0.45] unit decrease	Illumina [7506463] (imputed)	N
2065	chr3	194061825	194061826	rs11711157	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	3q29		rs11711157-T	0.38295	5E-8		0.0112742	[0.0072-0.0153] unit increase	Illumina [13479295] (imputed)	N
2065	chr3	194061825	194061826	rs11711157	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Interleukin-27 levels	21,758 European ancestry individuals	9,173 individuals	3q29		rs11711157-T	0.29	3E-19		0.0968	unit decrease	Affymetrix, Illumina [20300000] (imputed)	N
2065	chr3	194061906	194061907	rs4974539	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	3q29		rs4974539-A	NR	3E-13		0.0096	[0.0071-0.0121] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
2065	chr3	194061906	194061907	rs4974539	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q29		rs4974539-?	NR	2E-15				NR [~ 8900000] (imputed)	N
2065	chr3	194062518	194062519	rs3732477	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein DEFB1	5,362 Icelandic ancestry individuals	NA	3q29		rs3732477-T	0.2298	1E-26		0.234912	[0.19-0.28] unit decrease	Illumina [7506463] (imputed)	N
2065	chr3	194063610	194063611	rs9857914	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	CPN2	rs9857914-A	0.289	9E-13	(Beta-defensin 1, DEFB1.6629.3.3)	0.2	[0.14-0.26] unit decrease	Affymetrix [10572788] (imputed)	N
2065	chr3	194073822	194073823	rs34234514	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CPN2	5,363 Icelandic ancestry individuals	NA	3q29		rs34234514-A	0.1092	1E-19		0.272422	[0.21-0.33] unit increase	Illumina [7506463] (imputed)	N
2065	chr3	194078012	194078013	rs13085139	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	NR	rs13085139-G	0.059	7E-42	(Leucine-rich repeat-containing protein 15, LRRC15.6557.50.3)	0.82	[0.7-0.94] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194085046	194085047	rs923931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	NR	rs923931-G	0.88328125	9E-22	(APOL1, 9506_10_3)	0.36807927	[0.29-0.44] unit decrease	Illumina [> 1000000] (imputed)	N
2065	chr3	194085046	194085047	rs923931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	NR	rs923931-G	0.88328125	4E-17	(HAAO, 5861_78_3)	0.31473717	[0.24-0.39] unit decrease	Illumina [> 1000000] (imputed)	N
2065	chr3	194085046	194085047	rs923931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	NR	rs923931-G	0.88328125	3E-10	(CPN2, 6415_90_3)	0.24052878	[0.17-0.32] unit decrease	Illumina [> 1000000] (imputed)	N
2065	chr3	194085046	194085047	rs923931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	NR	rs923931-G	0.88328125	1E-27	(LRRC15, 6557_50_3)	0.40847668	[0.34-0.48] unit decrease	Illumina [> 1000000] (imputed)	N
2065	chr3	194085046	194085047	rs923931	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	NR	rs923931-G	0.88328125	1E-16	(AAGAB, 11926_23_3)	0.3202323	[0.24-0.4] unit decrease	Illumina [> 1000000] (imputed)	N
2065	chr3	194087926	194087927	rs57514363	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	LRRC15	rs57514363-G	0.113	6E-54	(Leucine-rich repeat-containing protein 15, LRRC15.6557.50.3)	0.59	[0.51-0.67] unit increase	Affymetrix [10572788] (imputed)	N
2065	chr3	194089316	194089317	rs6762627	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRRC15	5,367 Icelandic ancestry individuals	NA	3q29		rs6762627-C	0.1162	1E-41		0.388055	[0.33-0.44] unit increase	Illumina [7506463] (imputed)	N
2066	chr3	194119749	194119749	rs10638925	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	3q29	GP5	rs10638925-CCATAAA	0.2281	1E-13		0.03192107	[0.023-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q29	GP5	rs1466733-G	0.237902	8E-25		0.027420033	[0.022-0.033] unit increase	Affymetrix [93095623] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q29	GP5	rs1466733-G	0.237909	1E-12		0.018863074	[0.014-0.024] unit decrease	Affymetrix [93095623] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q29	GP5	rs1466733-G	0.23788	5E-14		0.019773064	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q29	NR	rs1466733-G	0.240792	7E-17		0.01796	[0.014-0.022] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs1466733-A	0.744522	1E-19				Affymetrix, Illumina [17210439] (imputed)	N
2066	chr3	194120997	194120998	rs1466733	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q29	NR	rs1466733-A	0.761701	4E-18		0.01956	[0.015-0.024] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2066	chr3	194121172	194121173	rs376133816	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q29		rs376133816-T	NR	8E-12		0.0158	[0.011-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2066	chr3	194121173	194121174	rs377335397	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs377335397-A	0.247187	4E-19				Affymetrix, Illumina [24588908] (imputed)	N
2066	chr3	194138781	194138782	rs73069193	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	White blood cell count (basophil)	62,076 Japanese ancestry individuals	NA	3q29	ATP13A3	rs73069193-?	NR	4E-8		0.06672	[0.043-0.091] unit decrease novel	Illumina [6108953] (imputed)	N
2066	chr3	194164342	194164343	rs7653461	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29	ATP13A3	rs7653461-T	0.190663	8E-10		0.017343966	[0.012-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2066	chr3	194168499	194168500	rs9861816	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs9861816-?	NR	6E-11				NR [~ 8900000] (imputed)	N
2066	chr3	194177321	194177322	rs9820762	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Blautia A sp900066355 abundance in stool	5,959 Finnish ancestry individuals	NA	3q29		rs9820762-T	0.213419	2E-8		0.0575674	[0.037-0.078] unit decrease	Illumina [7980478] (imputed)	N
2066	chr3	194229303	194229304	rs11916209	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Trunk fat mass adjusted for trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	3q29	TMEM44	rs11916209-T	NR	1E-7		0.13	NR unit decrease	Affymetrix, Illumina [12061510] (imputed)	N
2066	chr3	194229303	194229304	rs11916209	32239398	Liu L	2020-04-01	Hum Genet	Two novel pleiotropic loci associated with osteoporosis and abdominal obesity.	Femoral neck bone mineral density and trunk fat mass adjusted by trunk lean mass	10,208 European ancestry individuals, 445 Hispanic individuals, 843 African ancestry individuals, 1,539 East Asian individuals	NA	3q29	TMEM44	rs11916209-T	NR	5E-7				Affymetrix, Illumina [12061510] (imputed)	N
2066	chr3	194237897	194237898	rs147484948	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q29	NR	rs147484948-?	NR	1E-7	(Latino)	1.2626	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	52,107 European ancestry individuals	48,997 individuals	3q29		rs1706003-T	0.4687	2E-11		0.7	[0.5-0.9] unit decrease	Affymetrix [9800000]	N
2067	chr3	194299966	194299967	rs1706003	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	27,612 European ancestry women	NA	3q29		rs1706003-G	0.53	2E-7		0.031	[0.019-0.043] unit increase	Affymetrix [NR]	N
2067	chr3	194299966	194299967	rs1706003	34274964	Duijvenboden S	2021-07-19	Hum Mol Genet	Genomic and pleiotropic analyses of resting QT interval identifies novel loci and overlap with atrial electrical disorders.	QT interval	24,495 European ancestry men	NA	3q29		rs1706003-G	0.53	8E-6		0.027	[0.015-0.039] unit increase	Affymetrix [NR]	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	9E-11	(224 ms)	0.0343693	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	9E-10	(222 ms)	0.0329808	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	8E-14	(150 ms)	0.0404025	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	8E-13	(130 ms)	0.0382279	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	7E-9	(110 ms)	0.0307211	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	7E-11	(212 ms)	0.0346779	[0.023-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	7E-11	(120 ms)	0.0355239	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	7E-10	(220 ms)	0.0329082	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	6E-12	(200 ms)	0.036769	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	6E-11	(226 ms)	0.034943	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	6E-11	(184 ms)	0.0363644	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	6E-11	(176 ms)	0.0359562	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	6E-10	(134 ms)	0.0332892	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	5E-12	(172 ms)	0.0382882	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	5E-12	(138 ms)	0.0371338	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	5E-11	(206 ms)	0.0348873	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	5E-11	(122 ms)	0.0362589	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	5E-10	(112 ms)	0.0333198	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	4E-14	(144 ms)	0.0407015	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	4E-12	(178 ms)	0.0380044	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	4E-12	(148 ms)	0.037543	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	4E-11	(194 ms)	0.0354088	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	4E-11	(186 ms)	0.0364827	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-8	(118 ms)	0.0298509	[0.019-0.041] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-12	(180 ms)	0.0383774	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-12	(160 ms)	0.0382322	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-12	(156 ms)	0.0374979	[0.026-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(216 ms)	0.0351755	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(214 ms)	0.0349534	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(202 ms)	0.0358283	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(198 ms)	0.0364115	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(196 ms)	0.0356668	[0.024-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(192 ms)	0.0360215	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-11	(188 ms)	0.0361803	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	3E-10	(228 ms)	0.0339671	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-9	(236 ms)	0.0320946	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-8	(238 ms)	0.0302789	[0.019-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-14	(166 ms)	0.0411193	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-14	(142 ms)	0.0422805	[0.031-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-14	(128 ms)	0.0413416	[0.03-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-13	(168 ms)	0.0402494	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-13	(140 ms)	0.0399466	[0.029-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-12	(158 ms)	0.0386364	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(210 ms)	0.0359159	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(190 ms)	0.0362065	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(182 ms)	0.03669	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(174 ms)	0.0361734	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(162 ms)	0.0370152	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(146 ms)	0.0368172	[0.026-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-11	(136 ms)	0.035826	[0.025-0.047] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-10	(218 ms)	0.0340227	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-10	(204 ms)	0.0341192	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	2E-10	(124 ms)	0.0350493	[0.024-0.046] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-9	(234 ms)	0.0330135	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-9	(232 ms)	0.0330845	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-9	(230 ms)	0.0329005	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-9	(114 ms)	0.0328015	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-13	(152 ms)	0.040375	[0.029-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-12	(170 ms)	0.0388601	[0.028-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-12	(164 ms)	0.0383585	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-12	(154 ms)	0.0381633	[0.027-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-12	(126 ms)	0.0384365	[0.027-0.05] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-11	(208 ms)	0.03662	[0.025-0.048] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	3q29	TMEM44	rs1706003-G	0.557983	1E-10	(132 ms)	0.034059	[0.023-0.045] unit decrease	Affymetrix [10000000] (imputed)	N
2067	chr3	194299966	194299967	rs1706003	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q29	TMEM44	rs1706003-T	0.4652	3E-17		0.1326	[0.1-0.16] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2067	chr3	194327097	194327098	rs789852	20031603	Marroni F	2009-08-01	Circ Cardiovasc Genet	A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.	QT interval	2,325 European ancestry individuals	NA	3q29	LOC100132805	rs789852-A	0.08	7E-7		0.25	[0.15-0.35] unit increase	Illumina [~ 318327]	N
2067	chr3	194361555	194361556	rs9258	33087363	Xu W	2020-10-21	Sci Adv	The FAM171A2 gene is a key regulator of progranulin expression and modifies the risk of multiple neurodegenerative diseases.	Cerebrospinal fluid progranulin levels	432 European ancestry individuals	930 Han Chinese ancestry individuals	3q29	NR	rs9258-A	NR	2E-6	(EA)	0.002091	NR unit increase	Illumina [3262988] (imputed)	N
2068	chr3	194403511	194403512	rs11359133	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q29	FAM43A	rs11359133-T	0.463635	3E-10		0.014005311	[0.0097-0.0184] unit decrease	Affymetrix [93095623] (imputed)	N
2068	chr3	194403577	194403578	rs1773225	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage	1,005 European ancestry cases, 1,711 European ancestry controls	NA	3q29	intergenic	rs1773225-?	NR	5E-7		1.32	[1.18-1.49]	Affymetrix, Illumina [39235000] (imputed)	N
2068	chr3	194404521	194404522	rs789862	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q29	FAM43A	rs789862-G	0.402753	3E-14		0.01715596	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2068	chr3	194404521	194404522	rs789862	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q29	NR	rs789862-G	0.403267	4E-13		0.014628	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2068	chr3	194404521	194404522	rs789862	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q29		rs789862-?	NR	4E-10				NR [~ 8900000] (imputed)	N
2068	chr3	194405629	194405630	rs789860	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q29		rs789860-T	NR	9E-9		0.0099	[0.0066-0.0132] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2068	chr3	194405887	194405888	rs789859	31430377	Chung J	2019-08-20	Brain	Genome-wide association study of cerebral small vessel disease reveals established and novel loci.	Non-lobar intracerebral hemorrhage (MTAG)	at least 1,005 European ancestry cases, at least 1,711 European ancestry controls	NA	3q29	Intergenic	rs789859-?	NR	1E-6		1.0638298	[1.04-1.09]	Affymetrix, Illumina [39235000] (imputed)	N
2068	chr3	194405887	194405888	rs789859	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	3q29	NR	rs789859-A	NR	2E-6	(CPZe)	0.1696	[NR] unit increase	Illumina [1190033]	N
2068	chr3	194405965	194405966	rs789858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	3q29	FAM43A	rs789858-T	0.402649	3E-11		0.015056514	[0.011-0.019] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194405965	194405966	rs789858	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q29	FAM43A	rs789858-T	0.40269	1E-11		0.015361033	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194405965	194405966	rs789858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs789858-T	0.372709	2E-12				Affymetrix, Illumina [23114412] (imputed)	N
2068	chr3	194405965	194405966	rs789858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q29	NR	rs789858-T	0.403723	1E-12		0.013974	[0.01-0.018] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
2068	chr3	194406504	194406505	rs812583	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs812583-G	0.368264	1E-11				Affymetrix, Illumina [19872809] (imputed)	N
2068	chr3	194438052	194438053	rs1471333	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Whole brain grey matter density	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	3q29	LOC100507391	rs1471333-?		5E-6				Illumina [4322238] (imputed)	N
2068	chr3	194470631	194470632	rs10933668	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	3q29	NR	rs10933668-C	0.3138	5E-12				NR [9056863] (imputed)	N
2068	chr3	194472605	194472606	rs6777925	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	3q29		rs6777925-C	0.31	7E-16		8.08	z score increase	Affymetrix [9061022] (imputed)	N
2068	chr3	194472605	194472606	rs6777925	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	AC090505.6	rs6777925-C	0.309246	7E-12		0.016626492	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2068	chr3	194502472	194502473	rs6806407	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q29	AC090505.6	rs6806407-C	0.665647	4E-15		0.01880547	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506202	194506204	rs34477782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q29	AC090505.6	rs34477782-A	0.594712	9E-15		0.018071013	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506202	194506204	rs34477782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q29	AC090505.6	rs34477782-A	0.59472	2E-11		0.01573278	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506202	194506204	rs34477782	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q29	AC090505.6	rs34477782-A	0.594755	2E-18		0.020321336	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506202	194506204	rs34477782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3q29	AC090505.6	rs34477782-A	0.595	2E-10		0.02333744	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
2068	chr3	194506202	194506204	rs34477782	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3q29	AC090505.6	rs34477782-A	0.595	4E-10		0.02299512	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2068	chr3	194506426	194506427	rs9823829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29	AC090505.6	rs9823829-A	0.578158	1E-12		0.01608796	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506426	194506427	rs9823829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q29	AC090505.6	rs9823829-A	0.578133	8E-18		0.01957603	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506426	194506427	rs9823829	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q29	AC090505.6	rs9823829-A	0.578154	7E-18		0.019615112	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2068	chr3	194506426	194506427	rs9823829	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs9823829-A	0.48997	7E-24				Affymetrix, Illumina [24558453] (imputed)	N
2068	chr3	194506426	194506427	rs9823829	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs9823829-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2069	chr3	194559472	194559473	rs753628	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	3q29	XXYLT1, LSG1, TMEM44	rs753628-A	0.37	3E-6	(EA)	0.04	unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2069	chr3	194620089	194620090	rs61253693	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	3q29	NR	rs61253693-?	NR	2E-7			[NR]	Illumina [5432814] (imputed)	N
2070	chr3	194650488	194650489	rs4320032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q29		rs4320032-?	NR	2E-8				NR [~ 8900000] (imputed)	N
2070	chr3	194672853	194672857	rs147232486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q29		rs147232486-T	NR	1E-17		0.0166	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538521] (imputed)	N
2070	chr3	194676804	194676805	rs35060063	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q29	intergenic	rs35060063-G		1E-17		0.019	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2070	chr3	194676804	194676805	rs35060063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3q29	intergenic	rs35060063-A	0.5023	2E-9		0.02136169	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2070	chr3	194676804	194676805	rs35060063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hemoglobin concentration	172,925 European ancestry individuals	NA	3q29	intergenic	rs35060063-A	0.5024	5E-10		0.02207133	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2070	chr3	194676804	194676805	rs35060063	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Hematocrit	173,039 European ancestry individuals	NA	3q29	intergenic	rs35060063-A	0.5023	1E-10		0.02282749	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2070	chr3	194681281	194681282	rs1075870	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs1075870-G	0.399413	6E-22				Affymetrix, Illumina [24653286] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q29		rs1075871-A	NR	4E-18		0.0175	[0.014-0.021] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	3q29		rs1075871-A	NR	5E-17		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538534] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29		rs1075871-A	0.501754	2E-24		0.022529226	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q29		rs1075871-A	0.501734	4E-24		0.022461701	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	3q29		rs1075871-A	0.501721	8E-25		0.02281695	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2070	chr3	194681296	194681297	rs1075871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs1075871-?	NR	2E-22				NR [~ 8900000] (imputed)	N
2070	chr3	194681870	194681871	rs711991	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs711991-C	0.453227	2E-22				Affymetrix, Illumina [24332387] (imputed)	N
2070	chr3	194681870	194681871	rs711991	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q29	NR	rs711991-C	0.56929	1E-23		0.018685	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2070	chr3	194681870	194681871	rs711991	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q29	NR	rs711991-C	0.568957	6E-24		0.018753	[0.015-0.022] SD unit decrease	Affymetrix, Illumina [50638016] (imputed)	N
2070	chr3	194690449	194690450	rs1517215	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	3q29	NR	rs1517215-C	0.560567	1E-24		0.019169	[0.016-0.023] SD unit decrease	Affymetrix, Illumina [50640577] (imputed)	N
2070	chr3	194736737	194736738	rs6437450	29855537	Hirata T	2018-05-31	Sci Rep	Japanese GWAS identifies variants for bust-size, dysmenorrhea, and menstrual fever that are eQTLs for relevant protein-coding or long non-coding RNAs.	Menstruation quality of life impact (loss of concentration)	995 Japanese ancestry female cases, 4,739 Japanese ancestry female controls	1,081 Japanese ancestry female cases, 4,533 Japanese ancestry female controls	3q29	NR	rs6437450-C	0.829839437	4E-6		0.22219077	[0.13-0.32] unit increase	Affymetrix [536506]	N
2070	chr3	194737872	194737873	rs2676917	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	3q29	C3orf21	rs2676917-G		7E-6		0.12	[0.07-0.17] unit increase	Affymetrix [~ 2500000] (imputed)	N
2070	chr3	194758009	194758010	rs3892715	18937294	Lasky-Su J	2008-12-05	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association scan of the time to onset of attention deficit hyperactivity disorder.	Attention deficit hyperactivity disorder (time to onset)	930 European ancestry trios	NA	3q29	intergenic	rs3892715-C	NR	6E-6	(earlier onset)			Perlegen [429981]	N
2071	chr3	194782393	194782394	rs6785291	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	3q29	XXYLT1	rs6785291-A	0.7523	2E-6		0.066	[0.039-0.093] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2071	chr3	194783032	194783033	rs55947051	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	3q29	XXYLT1	rs55947051-T	0.84078125	9E-14	(XXYLT1, 6375_75_3)	0.24786407	[0.18-0.31] unit decrease	Illumina [> 1000000] (imputed)	N
2071	chr3	194789031	194789032	rs2720930	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XXYLT1	5,355 Icelandic ancestry individuals	NA	3q29		rs2720930-A	0.3708	3E-13		0.133058	[0.097-0.169] unit increase	Illumina [7506463] (imputed)	N
2071	chr3	194800852	194800853	rs60902112	30061737	Nielsen JB	2018-07-30	Nat Genet	Biobank-driven genomic discovery yields new insight into atrial fibrillation biology.	Atrial fibrillation	60,620 European ancestry cases, 970,216 European ancestry controls	NA	3q29	XXYLT1	rs60902112-T	0.226	2E-8		1.05	[1.03-1.06]	Illumina [34740186] (imputed)	N
2071	chr3	194800852	194800853	rs60902112	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q29	XXYLT1	rs60902112-T	0.27	6E-7		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2071	chr3	194821376	194821377	rs73206626	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	3q29		rs73206626-?	NR	8E-11				NR [~ 8900000] (imputed)	N
2071	chr3	194858373	194858374	rs2131877	20876614	Yoon KA	2010-09-28	Hum Mol Genet	A genome-wide association study reveals susceptibility variants for non-small cell lung cancer in the Korean population.	Non-small cell lung cancer	621 Korean ancestry cases, 1,541 Korean ancestry controls	804 Korean ancestry cases, 1,470 Korean ancestry controls	3q29	C3orf21	rs2131877-G	0.44	2E-8		1.3	[1.19-1.42]	Affymetrix [246758]	N
2071	chr3	194863859	194863860	rs4677813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q29		rs4677813-C	NR	2E-10		0.0121	[0.0084-0.0158] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
2071	chr3	194863859	194863860	rs4677813	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q29	XXYLT1	rs4677813-T	0.750189	2E-8		0.00893255	[0.0058-0.012] unit increase	Affymetrix [12370749]	N
2071	chr3	194865693	194865694	rs79259450	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q29	NR	rs79259450-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
2071	chr3	194876848	194876849	rs7644678	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q29		rs7644678-?	NR	6E-9				NR [~ 8900000] (imputed)	N
2071	chr3	194876992	194876993	rs11721261	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	3q29		rs11721261-T	NR	8E-11		0.0146	[0.01-0.019] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
2071	chr3	194881755	194881756	rs7616009	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q29	NA	rs7616009-A	0.1595	4E-11		0.0157	[0.011-0.02] unit decrease	NR [~ 27400000] (imputed)	N
2072	chr3	194913029	194913030	rs57827131	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q29	NR	rs57827131-?	NR	1E-6		0.2498	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2072	chr3	194983052	194983053	rs2410840	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	CENTB2	rs2410840-?	NR	4E-6	(hypoxanthine)	0.22184461	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2072	chr3	194993668	194993670	rs36082205	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	3q29	XXYLT1	rs36082205-A	0.574	4E-25	(Xyloside xylosyltransferase 1, XXYLT1.6375.75.3)	0.26	[0.22-0.3] unit increase	Affymetrix [10572788] (imputed)	N
2072	chr3	195007851	195007852	rs1538767	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein XXYLT1	5,355 Icelandic ancestry individuals	NA	3q29		rs1538767-T	0.4515	5E-22		0.169875	[0.14-0.2] unit decrease	Illumina [7506463] (imputed)	N
2072	chr3	195019419	195019420	rs140333256	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q29	NR	rs140333256-?	NR	1E-7		0.4046	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2073	chr3	195057000	195057001	rs13082563	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3q29	NR	rs13082563-?	NR	7E-7		0.0534	[0.032-0.075] unit decrease	Illumina [at least 560000] (imputed)	N
2073	chr3	195072917	195072918	rs7611238	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q29	ACAP2	rs7611238-A	0.57	1E-6	(EA)	0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2073	chr3	195072917	195072918	rs7611238	25673413	Locke AE	2015-02-12	Nature	Genetic studies of body mass index yield new insights for obesity biology.	Body mass index	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 Filipino female individuals, 205 Seychellois male individuals, 287 Seychellois female individuals, 2,964 South Asian ancestry male individuals, 658 South Asian ancestry female individuals	3q29	ACAP2	rs7611238-A	0.569	3E-7		0.018	[0.011-0.025] kg/m2 increase	Affymetrix, Illumina [2550021]	N
2073	chr3	195114613	195114614	rs34637964	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q29	ACAP2	rs34637964-T	0.270028	1E-10		0.016641347	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
2073	chr3	195150496	195150497	rs79900979	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q29	NR	rs79900979-?	NR	7E-8		0.447	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2073	chr3	195150496	195150497	rs79900979	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q29	NR	rs79900979-?	NR	6E-9		0.4281	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	NR	rs68062772-G	0.1828	4E-12		0.019998249	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q29	NR	rs68062772-G	0.182817	1E-12		0.020548064	[0.015-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	3q29		rs68062772-G	0.182816	3E-10		0.01795748	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q29		rs68062772-G	0.182798	3E-9		0.016957248	[0.011-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q29		rs68062772-G	0.182752	2E-9		0.017345203	[0.012-0.023] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q29		rs68062772-G	0.182763	3E-10		0.018128842	[0.012-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs68062772-G	0.159856	1E-10				Affymetrix, Illumina [23472807] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q29	NR	rs68062772-G	0.182718	7E-13		0.01767	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
2074	chr3	195171794	195171795	rs68062772	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	3q29	NR	rs68062772-?	NR	1E-6		0.0579	[0.034-0.081] unit increase	Illumina [at least 560000] (imputed)	N
2074	chr3	195197078	195197079	rs149877182	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	3q29	ACAP2, MIR5692C1	rs149877182-?	NR	3E-10		0.024274116	[0.017-0.032] unit increase	Illumina [27896057] (imputed)	N
2074	chr3	195289386	195289387	rs6801044	26718567	Williams SR	2015-12-30	Neurology	Shared genetic susceptibility of vascular-related biomarkers with ischemic and recurrent stroke.	Creatinine levels in ischemic stroke	1,725 European ancestry cases, 258 African ancestry cases, 117 cases	NA	3q29	NR	rs6801044-?	NR	4E-6				Illumina [7500450] (imputed)	N
2075	chr3	195298891	195298892	rs139828053	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q29	APOD	rs139828053-T	0.969099	2E-8		0.0316402	[0.021-0.043] unit increase	Affymetrix [NR] (imputed)	N
2075	chr3	195328120	195328121	rs6764777	30741946	Gialluisi A	2019-02-11	Transl Psychiatry	Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia.	Rapid automised naming of letters	2,563 European ancestry individuals	NA	3q29	Intergenic	rs6764777-A	0.1794625	5E-6		0.223136	[0.13-0.32] unit increase	Illumina [6952813] (imputed)	N
2075	chr3	195371027	195371028	rs144622717	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Lymphocytic leukemia	852 European ancestry cases, 410,350 European ancestry controls	NA	3q29		rs144622717-A	0.014082	9E-8		2.442599	NR	Affymetrix [7846216] (imputed)	N
2075	chr3	195420548	195420549	rs376595274	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q29	NR	rs376595274-T	0.01045	1E-8	(GLUL)	0.276	NR unit increase	Illumina [1671387] (imputed)	N
2076	chr3	195477790	195477791	rs2291652	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	3q29	MUC4, MIR570, SDHAP2, MUC20, RP11-141C7.4, SDHAP1	rs2291652-G	0.4385	2E-8		5.583	NR z score decrease	Illumina [26237160] (imputed)	N
2076	chr3	195479236	195479237	rs67175307	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs67175307-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2076	chr3	195485439	195485440	rs3103933	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs3103933-A	0.37	8E-11	(EA, fixed)			Illumina [8520458] (imputed)	N
2076	chr3	195485439	195485440	rs3103933	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs3103933-A	0.37	3E-11	(fixed)	0.12	[NR] unit increase	Illumina [8520458] (imputed)	N
2076	chr3	195485439	195485440	rs3103933	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs3103933-A	0.37	2E-7	(males, fixed)			Illumina [8520458] (imputed)	N
2076	chr3	195487475	195487476	rs9714060	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	3q29	MUC4	rs9714060-G	0.43	7E-7		0.39	[0.23-0.55] unit decrease	Illumina [~ 31000000] (imputed)	N
2076	chr3	195492352	195492353	rs77370297	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q29		rs77370297-?	NR	3E-12				NR [~ 8900000] (imputed)	N
2076	chr3	195505126	195505127	rs73085315	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q29	NR	rs73085315-?	NR	2E-10	(Latino)	1.4698	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2076	chr3	195529117	195529118	rs2688482	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs2688482-T	0.31	7E-8	(p.Phe508del, fixed)	0.12	[NR] unit increase	Illumina [8520458] (imputed)	N
2076	chr3	195529117	195529118	rs2688482	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs2688482-T	0.31	6E-6	(females, p.Phe508del, fixed)			Illumina [8520458] (imputed)	N
2076	chr3	195529117	195529118	rs2688482	26417704	Corvol H	2015-09-29	Nat Commun	Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis.	Lung disease severity in cystic fibrosis	4,139 European and other ancestry p.Phe508del homozygote cases,  2,226 European and other ancestry cases	NA	3q29	MUC4, MUC20	rs2688482-T	0.31	3E-7	(EA, p.Phe508del, fixed)			Illumina [8520458] (imputed)	N
2076	chr3	195556378	195556379	rs9325389	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 17, height of vermillion upper lip)	2,187 European ancestry individuals	NA	3q29	NR	rs9325389-T	0.2933	4E-6		0.1547	[0.089-0.221] unit increase	Illumina [10677593] (imputed)	N
2077	chr3	195576332	195576333	rs7611259	34737440	Lona-Durazo F	2021-11-04	Commun Biol	A large Canadian cohort provides insights into the genetic architecture of human hair colour.	Brown vs. black hair color	10,990 European ancestry individuals	NA	3q29		rs7611259-G	NR	2E-6		0.26961	[0.16-0.38] decrease	Affymetrix, Illumina [32876187] (imputed)	N
2077	chr3	195591722	195591723	rs114951929	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q29	NR	rs114951929-?	NR	5E-7	(Japanese)	0.7627	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2077	chr3	195596906	195596907	rs2278034	23897914	Wang H	2013-07-29	Pediatrics	A genome-wide association study (GWAS) for bronchopulmonary dysplasia.	Bronchopulmonary dysplasia	117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European ancestry newborn cases, 216 European ancestry newborn controls, 14 newborn cases, 22 newborn controls	371 newborn cases, 424 newborn controls	3q29	TNK2	rs2278034-?	0.52	5E-6	(EA)	1.83	[NR]	Illumina [1795103]	N
2077	chr3	195621049	195621056	rs141507877	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Low density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	3q29	TNK2	rs141507877-?		3E-6				Illumina [7405822] (imputed)	N
2077	chr3	195622615	195622616	rs77828245	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	Total cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	3q29	TNK2	rs77828245-?		5E-6				Illumina [7405822] (imputed)	N
2077	chr3	195628734	195628735	rs35259333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q29	NR	rs35259333-G	NR	2E-10		0.0433	[0.03-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
2077	chr3	195628734	195628735	rs35259333	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	3q29	NR	rs35259333-G	NR	3E-11		0.0455	[0.032-0.059] unit increase	Affymetrix [9000000] (imputed)	N
2077	chr3	195634992	195634993	rs13059257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q29		rs13059257-T	NR	2E-14		0.0441	[0.033-0.055] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2077	chr3	195634992	195634993	rs13059257	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	3q29		rs13059257-T	NR	8E-11		0.0443	[0.031-0.058] unit increase	Affymetrix, Illumina [20538307] (imputed)	N
2077	chr3	195651956	195651957	rs147242034	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q29		rs147242034-?	NR	6E-12				NR [~ 8900000] (imputed)	N
2077	chr3	195657777	195657778	rs9811850	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs9811850-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2078	chr3	195715867	195715868	rs2448519	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q29	SDHAP1, LOC105374301, TFRC, TNK2, MIR6829, LINC00885	rs2448519-C	0.39812	2E-7		1.0366	[1.02-1.05]	Affymetrix [32463443] (imputed)	N
2078	chr3	195735370	195735371	rs2019472	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Nonatopic asthma	28,862 European ancestry cases, 422,048 European ancestry controls	NA	3q29	NR	rs2019472-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
2078	chr3	195751396	195751397	rs4927705	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q29	TFRC	rs4927705-A	0.575788	3E-12		0.015571023	[0.011-0.02] unit increase	Affymetrix [93095623] (imputed)	N
2078	chr3	195751629	195751630	rs4927850	22158540	Wu C	2011-12-11	Nat Genet	Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.	Pancreatic cancer	981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls	2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls	3q29	TFRC	rs4927850-A	NR	2E-7		1.24	[1.14-1.35]	Affymetrix [666141]	N
2078	chr3	195757903	195757904	rs6791763	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q29	NR	rs6791763-?	NR	5E-36		0.07408	[0.062-0.086] unit increase novel	Illumina [6108953] (imputed)	N
2078	chr3	195762491	195762492	rs11715524	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma (adult onset)	26,582 European ancestry cases, 300,671 European ancestry controls	16,297 European ancestry cases, 217,711 European ancestry controls	3q29	SDHAP1, TFRC	rs11715524-A	0.508	3E-10		1.043	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
2078	chr3	195762491	195762492	rs11715524	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q29	SDHAP1, TFRC	rs11715524-A	NR	4E-10		1.044	[1.03-1.06]	Affymetrix [9000000] (imputed)	N
2078	chr3	195762491	195762492	rs11715524	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q29		rs11715524-?	NR	5E-8				NR [~ 8900000] (imputed)	N
2078	chr3	195771938	195771939	rs4927858	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	121,047 East Asian ancestry individuals	NA	3q29	NR	rs4927858-A	0.424554	1E-35		0.055046	[0.046-0.064] SD units increase	Affymetrix, Illumina [16286195] (imputed)	N
2078	chr3	195771938	195771939	rs4927858	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3q29	NR	rs4927858-?	NR	1E-22		0.04922	[0.039-0.059] unit increase novel	Illumina [6108953] (imputed)	N
2078	chr3	195774889	195774890	rs73208061	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q29	TFRC	rs73208061-A	0.35054	2E-16		0.019991808	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195776016	195776017	rs9849934	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	2,701 European ancestry men	NA	3q29	TFRC	rs9849934-C	0.486947	3E-6		0.384504	[0.22-0.54] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
2078	chr3	195779705	195779706	rs34906439	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q29	TFRC	rs34906439-G	0.313027	7E-17		0.020230344	[0.015-0.025] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195779735	195779736	rs41298087	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q29		rs41298087-C	0.687	4E-134		0.29	[0.27-0.32] % increase	Affymetrix [NR] (imputed)	N
2078	chr3	195779735	195779736	rs41298087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	3q29	NR	rs41298087-T	0.315555	3E-251		0.065825	[0.062-0.07] SD unit decrease	Affymetrix, Illumina [50615308] (imputed)	N
2078	chr3	195779735	195779736	rs41298087	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	3q29	NR	rs41298087-T	0.314424	1E-298		0.076222	[0.072-0.08] SD unit decrease	Affymetrix, Illumina [50266654] (imputed)	N
2078	chr3	195779811	195779812	rs41298085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29	TFRC	rs41298085-T	0.240764	5E-110		0.0730215	[0.068-0.078] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195779811	195779812	rs41298085	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29	TFRC	rs41298085-T	0.240744	7E-43		0.053204633	[0.046-0.061] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195783062	195783062	rs41297531	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q29	TFRC	rs41297531-AG	0.313174	1E-42		0.034056615	[0.029-0.039] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195783774	195783775	rs139490327	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		TFRC	rs139490327-?	NR	2E-10	(female)	0.546015	[NR] unit increase	Affymetrix [NR] (imputed)	N
2078	chr3	195791865	195791866	rs9852239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	3q29		rs9852239-C	NR	1E-153		0.0558	[0.052-0.06] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
2078	chr3	195791865	195791866	rs9852239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	350,468 European ancestry individuals, 135,482 East Asian ancestry individuals	NA	3q29		rs9852239-C	NR	2E-41		0.0286	[0.024-0.033] unit increase	Affymetrix, Illumina [20536605] (imputed)	N
2078	chr3	195791865	195791866	rs9852239	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	3q29		rs9852239-C	NR	1E-206		0.0648	[0.061-0.069] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
2078	chr3	195792869	195792870	rs3789135	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29	TFRC	rs3789135-A	0.613067	4E-9		0.019512596	[0.013-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195792869	195792870	rs3789135	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q29	TFRC	rs3789135-A	0.6132	1E-83		0.07033563	[0.063-0.077] unit increase	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195793338	195793339	rs2300775	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs2300775-C	0.53115	8E-75				Affymetrix, Illumina [21126107] (imputed)	N
2078	chr3	195800546	195800547	rs9859260	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular volume	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	3q29	TFRC	rs9859260-C	0.57	5E-6		0.004	[0.002-0.006] unit decrease	Illumina [27801688] (imputed)	N
2078	chr3	195800546	195800547	rs9859260	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3q29	NR	rs9859260-?	NR	1E-12				NR [2500000] (imputed)	N
2078	chr3	195800546	195800547	rs9859260	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular volume	24,167 European ancestry individuals	9,456 European ancestry individuals	3q29	TFRC	rs9859260-C	NR	8E-14		0.0	[0.002-0.004] fl increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2078	chr3	195800810	195800811	rs3817672	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (transferrin saturation)	131,471 European ancestry individuals	NA	3q29	TFRC	rs3817672-C	0.44	2E-8		0.026	[0.017-0.034] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
2078	chr3	195800810	195800811	rs3817672	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	3q29	TFRC	rs3817672-C	0.44	6E-11		0.031	[0.04-0.022] SD decrease	Affymetrix, Illumina [40000000] (imputed)	N
2078	chr3	195802843	195802843	rs113635136	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q29	TFRC	rs113635136-CA	NR	2E-51		0.0688588	[0.06-0.078] unit increase	Affymetrix [16832071] (imputed)	N
2078	chr3	195802843	195802843	rs113635136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3q29	TFRC	rs113635136-CA	0.2392	1E-13		0.03151933	[0.023-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195802843	195802843	rs113635136	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	3q29	TFRC	rs113635136-CA	0.2392	8E-15		0.03297408	[0.025-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195803337	195803338	rs55649226	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29	TFRC	rs55649226-C	0.625729	1E-9		0.020986421	[0.014-0.028] unit increase	Affymetrix [93095623] (imputed)	N
2078	chr3	195803337	195803338	rs55649226	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q29	TFRC	rs55649226-C	0.6247	2E-74		0.06682039	[0.06-0.074] unit increase	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	TFRC	rs41300435-A	0.240609	2E-18		0.024431977	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29	TFRC	rs41300435-A	0.240529	4E-35		0.047174264	[0.04-0.055] unit increase	Affymetrix [93095623] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	3q29	TFRC	rs41300435-A	0.240591	3E-21		0.024750436	[0.02-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q29	TFRC	rs41300435-A	0.240613	4E-25		0.028826145	[0.023-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q29	TFRC	rs41300435-A	0.240599	2E-25		0.027125008	[0.022-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs41300435-G	0.763507	3E-217				Affymetrix, Illumina [22063850] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red cell distribution width	531,774 European ancestry individuals	NA	3q29	NR	rs41300435-G	0.758013	4E-220		0.069451	[0.065-0.074] SD unit decrease	Affymetrix, Illumina [49860007] (imputed)	N
2078	chr3	195804020	195804021	rs41300435	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q29		rs41300435-?	NR	9E-181				NR [~ 8900000] (imputed)	N
2078	chr3	195807624	195807625	rs3804139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs3804139-C	0.538135	2E-257				Affymetrix, Illumina [24246363] (imputed)	N
2078	chr3	195807624	195807625	rs3804139	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs3804139-C	0.53385	1E-319				Affymetrix, Illumina [20825802] (imputed)	N
2078	chr3	195807624	195807625	rs3804139	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	3q29	TFRC	rs3804139-?	NR	1E-16		0.04165	[0.032-0.052] unit increase novel	Illumina [6108953] (imputed)	N
2078	chr3	195809138	195809139	rs11915082	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular hemoglobin	up to 21,020 European ancestry individuals, up to 3,621 African American individuals, up to 15,062 East Asian individuals.	16,389 individuals of European and African American ancestry.	3q29	NR	rs11915082-?	NR	5E-13				NR [2500000] (imputed)	N
2078	chr3	195809138	195809139	rs11915082	19862010	Ganesh SK	2009-10-11	Nat Genet	Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium.	Mean corpuscular hemoglobin	24,167 European ancestry individuals	9,456 European ancestry individuals	3q29	TFRC	rs11915082-A	NR	8E-13		0.0	[0.003-0.005] pg increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
2078	chr3	195810186	195810187	rs7619708	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	3q29	NR	rs7619708-C	0.2418	3E-10		0.0334	[0.023-0.044] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
2078	chr3	195810186	195810187	rs7619708	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q29	TFRC	rs7619708-C	0.2399	4E-64		0.0701444	[0.062-0.078] unit increase	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195813756	195813757	rs58365266	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	3q29		rs58365266-T	NR	9E-14		0.0159	[0.012-0.02] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
2078	chr3	195813756	195813757	rs58365266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs58365266-T	0.180863	3E-17				Affymetrix, Illumina [24653286] (imputed)	N
2078	chr3	195813756	195813757	rs58365266	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	3q29	NR	rs58365266-T	0.215266	3E-15		0.017752	[0.013-0.022] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
2078	chr3	195813756	195813757	rs58365266	32327693	Oskarsson GR	2020-04-23	Commun Biol	Predicted loss and gain of function mutations in ACO1 are associated with erythropoiesis.	Hemoglobin levels	684,122 European ancestry individuals	NA	3q29	TFRC	rs58365266-T		1E-9		0.016	[NR] unit increase	Affymetrix, Illumina [43000000] (imputed)	N
2078	chr3	195813756	195813757	rs58365266	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q29	TFRC	rs58365266-T	0.2143	6E-40		0.05773878	[0.049-0.066] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195816194	195816195	rs12490036	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3q29	intergenic	rs12490036-T	0.4774	9E-29		0.03858832	[0.032-0.045] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	NR	rs66682515-G	0.714373	2E-11		0.018154716	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29		rs66682515-G	0.714325	5E-34		0.033051282	[0.028-0.038] unit increase	Affymetrix [93095623] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29		rs66682515-G	0.714348	2E-29		0.0623512	[0.058-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29		rs66682515-G	0.714328	2E-32		0.034099095	[0.028-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q29		rs66682515-G	0.714398	7E-9		0.015522396	[0.01-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
2078	chr3	195821029	195821030	rs66682515	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q29	intergenic	rs66682515-G	0.7198	3E-57		0.06366505	[0.056-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195825755	195825756	rs12634180	28453575	Hodonsky CJ	2017-04-28	PLoS Genet	Genome-wide association study of red blood cell traits in Hispanics/Latinos: The Hispanic Community Health Study/Study of Latinos.	Mean corpuscular hemoglobin	12,502 Hispanic/Latino individuals	4,772 Hispanic/Latino individuals	3q29	TFRC	rs12634180-G	0.82	2E-8		0.22	[0.14-0.30] pg decrease	Illumina [27801688] (imputed)	N
2079	chr3	195827204	195827205	rs9990333	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin saturation)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q29	TFRC	rs9990333-T	0.46	7E-8		0.039	[0.025-0.053] unit increase	Affymetrix, Illumina [~ 2100000] (imputed)	N
2079	chr3	195827204	195827205	rs9990333	25352340	Benyamin B	2014-10-29	Nat Commun	Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis.	Iron status biomarkers (transferrin levels)	23,986 European ancestry individuals	Up to 24,986 European ancestry individuals	3q29	TFRC	rs9990333-T	0.46	2E-13		0.051	[0.037-0.065] unit decrease	Affymetrix, Illumina [~ 2100000] (imputed)	N
2079	chr3	195828126	195828127	rs181104541	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	3q29	NR	rs181104541-?	NR	2E-6	(Japanese)	0.542	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q29		rs73210009-A	0.464539	1E-49		0.0344123	[0.03-0.039] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	6,141 African American individuals, 17,272 Hispanic or Latin American individuals, 9,611 European ancestry individuals, 123 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	3q29		rs73210009-?	0.6231	3E-7		0.0417	[0.026-0.058] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Red cell distribution width	17,272 Hispanic or Latin American individuals	NA	3q29		rs73210009-?	0.6589	3E-7		0.058	[0.036-0.08] unit increase	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular volume	8,556 African American individuals, 17,141 Hispanic or Latin American individuals, 14,483 European ancestry individuals, 125 Asian ancestry individuals, 594 Native American ancestry individuals, 377 individuals	NA	3q29		rs73210009-?	0.6231	1E-9		0.2453	[0.17-0.32] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin concentration	16,353 African American individuals, 20,877 Hispanic or Latin American individuals, 29,587 European ancestry individuals, 635 Asian ancestry individuals, 20 Native American ancestry individuals, 384 individuals	NA	3q29		rs73210009-?	0.6231	5E-6		0.0277	[0.016-0.04] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	8,694 African American individuals, 17,400 Hispanic or Latin American individuals, 14,693 European ancestry individuals, 127 Asian ancestry individuals, 20 Native American ancestry individuals, 382 individuals	NA	3q29		rs73210009-?	0.6231	2E-11		0.1044	[0.074-0.135] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	32171239	Hodonsky CJ	2020-03-14	BMC Genomics	Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics.	Mean corpuscular hemoglobin	17,400 Hispanic or Latin American individuals	NA	3q29		rs73210009-?	0.6589	4E-6		0.1151	[0.066-0.164] unit decrease	Affymetrix, Illumina [21000000] (imputed)	N
2079	chr3	195830275	195830276	rs73210009	28957414	Pilling LC	2017-09-28	PLoS One	Red blood cell distribution width: Genetic evidence for aging pathways in 116,666 volunteers.	Red cell distribution width	116,666 British ancestry individuals	NA	3q29	NR	rs73210009-A	NR	6E-11		0.0280578	[0.019-0.037] unit decrease	Affymetrix [16832071] (imputed)	N
2079	chr3	195830309	195830310	rs9866168	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	3q29	TFRC	rs9866168-T	0.639	2E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [11800000] (imputed)	N
2079	chr3	195830379	195830380	rs74203182	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	3q29		rs74203182-T	NR	3E-55		0.0352	[0.031-0.04] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
2079	chr3	195830379	195830380	rs74203182	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3q29	intergenic	rs74203182-T	0.6959	3E-35		0.04861946	[0.041-0.056] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195831236	195831237	rs9872347	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29		rs9872347-C	0.682812	5E-56		0.03882413	[0.034-0.044] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195831236	195831237	rs9872347	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	3q29	NR	rs9872347-C	0.6736	5E-14		0.0318	[0.024-0.04] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
2079	chr3	195831236	195831237	rs9872347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs9872347-?	NR	9E-82				NR [~ 8900000] (imputed)	N
2079	chr3	195831236	195831237	rs9872347	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs9872347-?	NR	4E-265				NR [~ 8900000] (imputed)	N
2079	chr3	195832146	195832147	rs9877493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs9877493-C	0.681328	4E-91				Affymetrix, Illumina [24332387] (imputed)	N
2079	chr3	195832146	195832147	rs9877493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	3q29	NR	rs9877493-C	0.681168	2E-94		0.041144	[0.037-0.045] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
2079	chr3	195833433	195833434	rs6792601	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q29	NR	rs6792601-T	0.758634	2E-10		0.013651	[0.0094-0.0179] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
2079	chr3	195834302	195834303	rs9816784	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	491,553 European ancestry individuals	NA	3q29	NR	rs9816784-C	0.523013	7E-66		0.03443	[0.03-0.038] SD unit increase	Affymetrix, Illumina [50282193] (imputed)	N
2079	chr3	195834302	195834303	rs9816784	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q29	intergenic	rs9816784-C	0.5241	4E-98		0.07473334	[0.068-0.082] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195834356	195834357	rs11717368	23222517	van der Harst P	2012-12-05	Nature	Seventy-five genetic loci influencing the human red blood cell.	Red blood cell traits	62,553 European ancestry individuals, 9,308 South Asian ancestry individuals	63,506 European ancestry individuals	3q29	TFRC	rs11717368-C	0.52	7E-19	(EA, MCH)	0.008	[0.00016-0.01584] unit increase	Affymetrix, Illumina, Perlegen [2711806] (imputed)	N
2079	chr3	195838612	195838613	rs11917973	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total bilirubin levels	342,829 European ancestry individuals, 124,341 East Asian ancestry individuals	NA	3q29		rs11917973-T	NR	5E-10		0.0135	[0.0092-0.0178] unit increase	Affymetrix, Illumina [20535842] (imputed)	N
2079	chr3	195840260	195840261	rs61047863	33887194	Hu Y	2021-04-21	Am J Hum Genet	Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.	Mean corpuscular hemoglobin	20,714 Amish, White ancestry individuals, 447 Asian ancestry individuals, 11,246 Black individuals, 13,834 Central American ancestry, Cuban ancestry, Dominican ancestry, Mexican ancestry, Puerto Rican ancestry, South American ancestry individuals	NA	3q29		rs61047863-A	NR	1E-12		0.14	[0.1-0.18] unit increase	Illumina [94681438]	N
2079	chr3	195841879	195841880	rs6583291	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q29		rs6583291-C	0.611933	2E-26		0.0161868	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195843495	195843496	rs182013360	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H measurement	252 European ancestry individuals	NA	3q29		rs182013360-C	NR	7E-6		5.1136	[2.94-7.29] unit decrease	Illumina [NR] (imputed)	N
2079	chr3	195854521	195854522	rs11712192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29		rs11712192-A	0.213368	6E-18		0.024229776	[0.019-0.03] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195854521	195854522	rs11712192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29		rs11712192-A	0.213405	2E-24		0.0321157	[0.027-0.037] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195854521	195854522	rs11712192	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29		rs11712192-A	0.213394	1E-19		0.026092507	[0.02-0.032] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195854786	195854787	rs35270284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29		rs35270284-T	0.217916	3E-9		0.016849222	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195854786	195854787	rs35270284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q29		rs35270284-T	0.217832	2E-12		0.02004146	[0.014-0.026] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195854786	195854787	rs35270284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29		rs35270284-T	0.21792	1E-11		0.0527144	[0.048-0.058] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195854786	195854787	rs35270284	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29		rs35270284-T	0.217953	5E-11		0.02048928	[0.014-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195854981	195854982	rs7617390	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q29	intergenic	rs7617390-C	0.1777	3E-40		0.06391008	[0.054-0.073] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195877922	195877923	rs9846651	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Glycated hemoglobin levels	33,307 East Asian ancestry individuals	NA	3q29	LINC00885	rs9846651-T	0.485	2E-9		0.0165	[0.011-0.022] unit increase	Affymetrix, Illumina [15728197] (imputed)	N
2079	chr3	195902929	195902930	rs11929092	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29		rs11929092-C	0.489086	6E-9		0.013564377	[0.009-0.0181] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195902929	195902930	rs11929092	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q29	intergenic	rs11929092-C	0.4884	8E-25		0.03688802	[0.03-0.044] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195905109	195905110	rs7640081	28360221	Boger CA	2017-03-30	J Am Soc Nephrol	NFAT5 and SLC4A10 Loci Associate with Plasma Osmolality.	Blood osmolality (transformed sodium)	45,889 European ancestry individuals, up to 8,765 Asian Indian ancestry individuals, up to 7,215 African ancestry individuals	17,637 European ancestry individuals	3q29	NR	rs7640081-T	0.11	4E-6	(AA)	0.15	[0.085-0.215] unit decrease	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
2079	chr3	195906746	195906747	rs28429906	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q29	intergenic	rs28429906-G	0.1959	5E-34		0.05503497	[0.046-0.064] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195907652	195907653	rs4916483	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin concentration	135,482 East Asian ancestry individuals	NA	3q29		rs4916483-C	0.439269	7E-19		0.0322248	[0.025-0.039] unit decrease	Illumina [13477028] (imputed)	N
2079	chr3	195907652	195907653	rs4916483	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular volume	14,364 Japanese ancestry individuals	NA	3q29	TFRC, ZDHHC19	rs4916483-C	0.44	2E-8		0.067	[0.043-0.091] unit decrease	Illumina [561583]	N
2079	chr3	195907652	195907653	rs4916483	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Mean corpuscular hemoglobin	Up to 14,362 Japanese ancestry individuals	NA	3q29	TFRC, ZDHHC19	rs4916483-C	0.44	4E-11		0.078	[0.054-0.102] unit decrease	Illumina [561583]	N
2079	chr3	195908710	195908711	rs62410535	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red cell distribution width	171,529 European ancestry individuals	NA	3q29	intergenic	rs62410535-C	0.1373	8E-12		0.03561646	[0.025-0.046] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195911575	195911575	rs11428167	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	3q29	intergenic	rs11428167-AT	0.1354	4E-20		0.04815017	[0.038-0.058] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195911633	195911634	rs9812813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	3q29		rs9812813-T	0.441098	1E-40		0.0492524	[0.042-0.056] unit decrease	Illumina [13476266] (imputed)	N
2079	chr3	195914096	195914097	rs9824251	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29		rs9824251-T	0.136588	2E-38		0.041933447	[0.036-0.048] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195916052	195916053	rs9834661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs9834661-?	NR	8E-43				NR [~ 8900000] (imputed)	N
2079	chr3	195916422	195916444	rs11272634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	153,512 East Asian ancestry individuals	NA	3q29		rs11272634-C	0.419141	3E-18		0.0288078	[0.022-0.035] unit increase	Illumina [13479135] (imputed)	N
2079	chr3	195916422	195916444	rs11272634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	3q29		rs11272634-C	0.418667	5E-55		0.059811	[0.052-0.067] unit decrease	Illumina [13476299] (imputed)	N
2079	chr3	195917963	195917964	rs2015708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	3q29		rs2015708-T	0.138387	9E-32		0.03927149	[0.033-0.046] unit increase	Affymetrix [93095623] (imputed)	N
2079	chr3	195917963	195917964	rs2015708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q29		rs2015708-T	0.138444	8E-39		0.04231427	[0.036-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195917963	195917964	rs2015708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29		rs2015708-T	0.138371	7E-141		0.0702568	[0.064-0.076] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195917963	195917964	rs2015708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29		rs2015708-T	0.138334	2E-161		0.086965434	[0.081-0.093] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195917963	195917964	rs2015708	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	3q29	intergenic	rs2015708-T	0.1376	1E-49		0.07631157	[0.066-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195918955	195918956	rs3893275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	NR	rs3893275-C	0.138713	5E-26		0.03422704	[0.028-0.041] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195918955	195918956	rs3893275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	3q29		rs3893275-C	0.138745	1E-22		0.031594507	[0.025-0.038] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195918955	195918956	rs3893275	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	3q29		rs3893275-C	0.138753	8E-14		0.024082849	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195918955	195918956	rs3893275	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	150,708 East Asian ancestry individuals	NA	3q29	NR	rs3893275-A	0.564428	6E-16		0.031056	[0.024-0.039] SD units decrease	Affymetrix, Illumina [16709798] (imputed)	N
2079	chr3	195918955	195918956	rs3893275	28017375	van Rooij FJA	2016-12-22	Am J Hum Genet	Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.	Mean corpuscular volume	up to 29,946 European ancestry individuals, up to 6150 African American individuals, 15,074 East Asian individuals.	16,389 individuals of European and African American ancestry.	3q29	ZDHHC19	rs3893275-A	NR	7E-8	(Asian)	0.0033	[0.0021-0.0045] unit increase	NR [2500000] (imputed)	N
2079	chr3	195919983	195919984	rs3861957	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	119,629 East Asian ancestry individuals	NA	3q29	NR	rs3861957-A	0.458208	2E-49		0.064497	[0.056-0.073] SD units decrease	Affymetrix, Illumina [16286228] (imputed)	N
2079	chr3	195921310	195921311	rs9325434	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q29	ZDHHC19	rs9325434-A	0.139316	2E-36		0.0405729	[0.034-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195921310	195921311	rs9325434	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs9325434-?	NR	1E-143				NR [~ 8900000] (imputed)	N
2079	chr3	195921310	195921311	rs9325434	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin concentration	172,851 European ancestry individuals	NA	3q29	ZDHHC19	rs9325434-A	0.1393	6E-17		0.04212774	[0.032-0.052] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195922426	195922427	rs9850274	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q29		rs9850274-?	NR	6E-34				NR [~ 8900000] (imputed)	N
2079	chr3	195922426	195922427	rs9850274	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	3q29	ZDHHC19	rs9850274-G	0.7082	5E-54		0.06081938	[0.053-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195922569	195922570	rs4916478	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	126,151 East Asian ancestry individuals	NA	3q29	NR	rs4916478-C	0.626174	4E-22		0.04583	[0.037-0.055] SD units increase	Affymetrix, Illumina [16289083] (imputed)	N
2079	chr3	195922569	195922570	rs4916478	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Reticulocyte fraction of red cells	170,690 European ancestry individuals	NA	3q29	ZDHHC19	rs4916478-G	0.1393	7E-9		0.03031981	[0.02-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2079	chr3	195922839	195922840	rs9325435	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	3q29	ZDHHC19	rs9325435-T	0.142676	1E-13		0.023904176	[0.018-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2079	chr3	195924035	195924036	rs62410539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Red blood cell count	108,794 Japanese ancestry individuals	NA	3q29	ZDHHC19	rs62410539-?	NR	5E-11		0.03232	[0.023-0.042] unit increase novel	Illumina [6108953] (imputed)	N
2079	chr3	195924035	195924036	rs62410539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	3q29	ZDHHC19	rs62410539-?	NR	2E-25		0.05137	[0.042-0.061] unit decrease novel	Illumina [6108953] (imputed)	N
2079	chr3	195924035	195924036	rs62410539	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q29	ZDHHC19	rs62410539-?	NR	8E-38		0.0634	[0.054-0.073] unit decrease novel	Illumina [6108953] (imputed)	N
2079	chr3	195925102	195925103	rs2280530	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin concentration	108,728 Japanese ancestry individuals	NA	3q29	NR	rs2280530-?	NR	1E-14		0.03901	[0.029-0.049] unit decrease novel	Illumina [6108953] (imputed)	N
2079	chr3	195925354	195925355	rs1106479	33567813	Mateos MK	2021-02-11	Haematologica	Methotrexate-related central neurotoxicity: clinical characteristics, risk factors and genome-wide association study in children treated for acute lymphoblastic leukemia.	Methotrexate-related central neurotoxicity in children treated for acute lymphoblastic leukemia	48 European ancestry cases, 537 European ancestry controls	NA	3q29		rs1106479-T	NR	4E-7		3.97	[2.33-6.75]	Illumina [10838245] (imputed)	N
2079	chr3	195928227	195928228	rs4916495	29198719	Shaffer JR	2017-11-30	Am J Hum Genet	Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment.	Lobe attachment (rater-scored or self-reported)	66,741 European ancestry individuals, 5,062 Hispanic individuals, 2,857 Han Chinese ancestry individuals	NA	3q29	NR	rs4916495-?	NR	9E-6				Illumina [at least 7383741] (imputed)	N
2079	chr3	195928853	195928854	rs11924930	21160409	Petrovski S	2010-12-14	AIDS	Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.	HIV-1 susceptibility	531 Sub-Saharan African ancestry cases, 848 Sub-Saharan African ancestry controls	NA	3q29	ZDHHC19	rs11924930-?	0.40	7E-6				Illumina [~ 800000]	N
2079	chr3	195941215	195941216	rs7642243	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	3q29	SLC51A	rs7642243-C	0.39	8E-16	(X-09789)	0.048	[0.036-0.06] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	3q29	NR	rs5855544-TG	NR	2E-16		0.0213	[0.016-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	6E-11	(epiandrosterone sulfate)	0.155	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	6E-11	(androsterone sulfate)	0.155	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	2E-20	(16a-hydroxy DHEA 3-sulfate)	0.217	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	1E-21	(andro steroid monosulfate C19H28O6S (1)*)	0.225	[0.18-0.27] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	6E-11	(epiandrosterone sulfate)	0.155	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	6E-11	(androsterone sulfate)	0.155	[0.11-0.2] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	2E-20	(16a-hydroxy DHEA 3-sulfate)	0.217	[0.17-0.26] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	3q29	ZDHHC19, SLC51A	rs5855544-T	0.363036	1E-21	(andro steroid monosulfate C19H28O6S (1)*)	0.225	[0.18-0.27] unit increase	Illumina [13039987] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	3q29	NR	rs5855544-T	0.429389	3E-24		0.0130571	[0.01-0.016] unit increase	Affymetrix [16578495] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	3q29	NR	rs5855544-T	0.429051	1E-32		0.0333264	[0.028-0.039] unit increase	Affymetrix [16580851] (imputed)	N
2079	chr3	195942080	195942080	rs5855544	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	3q29	NR	rs5855544-T	0.429168	3E-10		0.0151304	[0.01-0.02] unit increase	Affymetrix [16585745] (imputed)	N
2080	chr3	195968642	195968643	rs1045075	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	3q29	NR	rs1045075-G	0.581304	1E-8		0.0114306	[0.0075-0.0154] unit decrease	NR [NR]	N
2080	chr3	195983102	195983103	rs56107869	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q29	NR	rs56107869-?	NR	9E-6		4.185	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
2080	chr3	195983105	195983106	rs56297497	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	3q29	NR	rs56297497-?	NR	9E-6		4.185	NR unit decrease	Affymetrix [at least 600000] (imputed)	N
2080	chr3	195988660	195988661	rs72143123	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	3q29	PCYT1A, RP11-447L10.1	rs72143123-C	0.349149	8E-13		0.016752085	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2080	chr3	195996406	195996407	rs59352354	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs59352354-G	0.650907	2E-16				Affymetrix, Illumina [17210439] (imputed)	N
2080	chr3	196008227	196008228	rs67349960	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	3q29	NR	rs67349960-G	0.652998	5E-18		0.017293	[0.013-0.021] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
2080	chr3	196044025	196044027	rs199908321	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	3q29		rs199908321-A	NR	2E-8		0.0139	[0.009-0.0188] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
2080	chr3	196061409	196061410	rs147954272	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs147954272-?	NR	7E-13				NR [~ 8900000] (imputed)	N
2080	chr3	196073071	196073072	rs9877304	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	3q29	UBXN7	rs9877304-G	0.736691	4E-10		0.0135927	[0.0093-0.0179] unit increase	Affymetrix [NR] (imputed)	N
2080	chr3	196078426	196078427	rs6774852	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	3q29	UBXD7	rs6774852-G	0.195	7E-6	(Weight z-score )	0.03	[NR] SD increase	Illumina [899892]	N
2080	chr3	196082909	196082911	rs3832181	28628107	Jonsson S	2017-06-19	Nat Genet	Identification of sequence variants influencing immunoglobulin levels.	IgM levels	14,442 Icelandic ancestry individuals	2,157 Swedish ancestry individuals	3q29	UBXN7	rs3832181-C	0.3842	2E-12		0.08	NR SD units increase	Illumina [21568490] (imputed)	N
2081	chr3	196096450	196096451	rs9860931	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q29		rs9860931-?	NR	9E-10				NR [~ 8900000] (imputed)	N
2081	chr3	196115345	196115345	rs35023530	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	3q29		rs35023530-GT	NR	1E-10		0.014	[0.0097-0.0183] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
2081	chr3	196115496	196115497	rs34801745	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	3q29	NR	rs34801745-?	NR	2E-11				Affymetrix [~ 8270000] (imputed)	N
2081	chr3	196115496	196115497	rs34801745	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	3q29	NA	rs34801745-C	0.3585	7E-11		0.0129	[0.009-0.0168] unit increase	NR [~ 27400000] (imputed)	N
2081	chr3	196137550	196137551	rs5027014	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	3q29		rs5027014-G	NR	8E-6		24.859	[14.2-35.52] unit decrease	Illumina [NR] (imputed)	N
2081	chr3	196157671	196157672	rs150895667	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular hemoglobin	108,054 Japanese ancestry individuals	NA	3q29	NR	rs150895667-?	NR	7E-16		0.1068	[0.081-0.133] unit decrease novel	Illumina [6108953] (imputed)	N
2081	chr3	196160927	196160928	rs78359342	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	3q29	UBXN7	rs78359342-G	0.732533	4E-9		0.0131701	[0.0088-0.0175] unit increase	Affymetrix [NR] (imputed)	N
2081	chr3	196170984	196170985	rs6583310	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		3q29	UBXN7	rs6583310-G	0.561245	2E-10		0.00878295	[0.0061-0.0115] unit decrease	Affymetrix [12370749]	N
2081	chr3	196170984	196170985	rs6583310	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	3q29		rs6583310-?	NR	9E-12				NR [~ 8900000] (imputed)	N
2081	chr3	196176998	196177000	rs35790189	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	3q29	AC117490.2	rs35790189-G	0.761941	3E-9		0.0154027315	[0.01-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2081	chr3	196187607	196187608	rs2342371	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	3q29	RNF168	rs2342371-G	0.270541	1E-8		0.0128107	[0.0084-0.0172] unit increase	Affymetrix [NR] (imputed)	N
2081	chr3	196187607	196187608	rs2342371	21897333	Irvin MR	2011-12-01	Pharmacogenet Genomics	Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.	Fat distribution (HIV)	192 European ancestry male cases	NA	3q29	RNF168	rs2342371-G	0.28	4E-6	(univariate, leg)			Illumina [319818]	N
2081	chr3	196194483	196194484	rs6775484	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	3q29		rs6775484-?	NR	2E-11				NR [~ 8900000] (imputed)	N
2082	chr3	196228359	196228360	rs9869437	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	3q29		rs9869437-A	NR	2E-18		0.0196	[0.015-0.024] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
2082	chr3	196230563	196230564	rs9837291	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q29	NR	rs9837291-C	NR	5E-14		0.0188	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
2082	chr3	196230790	196230791	rs9837772	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q29	RNF168	rs9837772-T	0.70636	4E-20		0.022660453	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2082	chr3	196231121	196231122	rs9865337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	3q29	RNF168	rs9865337-A	0.706383	3E-16		0.020199372	[0.015-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2082	chr3	196231121	196231122	rs9865337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	3q29	RNF168	rs9865337-A	0.706444	3E-23		0.0224851	[0.018-0.027] unit increase	Affymetrix [93095623] (imputed)	N
2082	chr3	196231121	196231122	rs9865337	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	3q29	RNF168	rs9865337-A	0.70642	6E-15		0.018982884	[0.014-0.024] unit increase	Affymetrix [93095623] (imputed)	N
2082	chr3	196231121	196231122	rs9865337	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	3q29		rs9865337-?	NR	4E-17				NR [~ 8900000] (imputed)	N
2082	chr3	196231126	196231127	rs12490312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	3q29		rs12490312-?	NR	7E-8				NR [~ 8900000] (imputed)	N
2082	chr3	196233135	196233136	rs7430950	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	3q29	NR	rs7430950-A	0.747209	4E-11		0.00597654	[0.0041-0.0079] unit increase	Affymetrix [16582909] (imputed)	N
2082	chr3	196233135	196233136	rs7430950	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	3q29	NR	rs7430950-A	0.747209	8E-15		0.00803838	[0.0059-0.0101] unit increase	Affymetrix [16582965] (imputed)	N
2082	chr3	196309291	196309292	rs35827219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	3q29	NR	rs35827219-T	NR	2E-12		0.0221	[0.016-0.028] unit increase	Affymetrix [9000000] (imputed)	N
2082	chr3	196314710	196314711	rs6583324	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Ruminococcus E sp900100595 abundance in stool	5,959 Finnish ancestry individuals	NA	3q29		rs6583324-C	0.493891	2E-9		0.0323507	[0.022-0.043] unit decrease	Illumina [7980478] (imputed)	N
2082	chr3	196317307	196317308	rs6583326	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	3q29	NR	rs6583326-?	NR	3E-8		0.16233104	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
2082	chr3	196343816	196343817	rs113048054	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Asthma	41,926 European ancestry cases, 239,773 European ancestry controls	10,365 cases, 16,100 controls	3q29	NNROS, LRRC33	rs113048054-G	0.06587	3E-11				Affymetrix [15688218] (imputed)	N
2082	chr3	196343816	196343817	rs113048054	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	3q29	NR	rs113048054-A	0.93413	4E-12		1.080497	[1.06-1.1]	Affymetrix [15688218] (imputed)	N
2083	chr3	196347252	196347253	rs6583331	27723757	Jin Y	2016-11-01	Nat Genet	Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants.	Vitiligo	2,853 European ancestry cases and 37,405 European ancestry controls	1,827 European ancestry cases and 2,181 European ancestry controls	3q29	FBXO45, NRROS	rs6583331-T	0.5467	3E-8		1.1449507	[1.09-1.2]	Illumina [8966411] (imputed)	N
2083	chr3	196349003	196349004	rs112336433	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q29	NRROS	rs112336433-C	0.93272	3E-8		1.069407	[1.05-1.09]	Affymetrix [8274727] (imputed)	N
2083	chr3	196358635	196358636	rs75366683	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls, 5,880 East Asian ancestry cases, 172,846 East Asian ancestry controls	NA	3q29		rs75366683-T	NR	2E-9		0.1101	[0.074-0.146] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
2083	chr3	196358635	196358636	rs75366683	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (adrenergics, inhalants)	28,880 European ancestry cases, 147,565 European ancestry controls	NA	3q29	AC023797.1	rs75366683-T	0.0650435	2E-9		0.11008117	[0.074-0.146] unit decrease	Affymetrix [7288503] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	34103634	Valette K	2021-06-08	Commun Biol	Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.	Asthma	56,167 White-British ancestry cases, 352,255 White-British ancestry controls	NA	3q29	FBXO45, NRROS	rs1684466-A	0.637708628167341	5E-16		0.05689482	[0.043-0.071] unit decrease	Affymetrix [35186738] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	64,538 European ancestry cases, 239,321 European ancestry controls	NR	3q29	LINC01063	rs1684466-G	0.365934	4E-16		1.0538113	[1.04058434327169-1.06720640741425]	NR [9572556] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	31959851	Olafsdottir TA	2020-01-20	Nat Commun	Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.	Asthma	16,247 European ancestry cases, 346,486 European ancestry controls, 52,942 cases, 355,713 controls	NA	3q29	NRROS, FBXO45, WDR53, CEP19, PIGX, PAK2	rs1684466-G	0.36229	4E-12		1.0478226	[1.03-1.06]	Affymetrix [32463443] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	31619474	Zhu Z	2019-10-17	Eur Respir J	Shared Genetics of Asthma and Mental Health Disorders: A Large-Scale Genome-Wide Cross-Trait Analysis.	Asthma	46,802 European ancestry cases, 347,481 European ancestry controls	23,948 European and unknown ancestry cases, 118,538 European and unknown ancestry controls	3q29	NRROS	rs1684466-G	0.36238	4E-15		1.0534402	[1.04-1.07]	Affymetrix [8274727] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	30929738	Ferreira MAR	2019-03-28	Am J Hum Genet	Genetic Architectures of Childhood- and Adult-Onset Asthma Are Partly Distinct.	Asthma	40,544 European ancestry cases, 300,671 European ancestry controls	NA	3q29	FBXO45, CEP19	rs1684466-G	NR	9E-13		1.053	[1.04-1.07]	Affymetrix [9000000] (imputed)	N
2083	chr3	196359309	196359310	rs1684466	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Respiratory diseases	approximately 459,000 European ancestry individuals	NA	3q29		rs1684466-?	NR	1E-11				NR [~ 8900000] (imputed)	N
2083	chr3	196360829	196360830	rs1684468	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	3q29	FBXO45	rs1684468-T	NR	9E-7		1.0582	NR	Affymetrix, Illumina [8278136] (imputed)	N
2083	chr3	196367671	196367673	rs10566567	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	3q29		rs10566567-C	NR	2E-14		0.0247	[0.018-0.031] unit decrease	Affymetrix, Illumina [20529668] (imputed)	N
2083	chr3	196367929	196367930	rs7636493	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q29	PIGX, NRROS	rs7636493-A	0.179266	4E-17		0.024514642	[0.019-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2083	chr3	196367929	196367930	rs7636493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	583,850 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs7636493-A	0.163196	6E-19				Affymetrix, Illumina [19872809] (imputed)	N
2083	chr3	196367929	196367930	rs7636493	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	3q29	NR	rs7636493-A	0.179152	1E-21		0.025556	[0.02-0.031] SD unit decrease	Affymetrix, Illumina [50000174] (imputed)	N
2083	chr3	196367935	196367936	rs7636495	32296059	Han Y	2020-04-15	Nat Commun	Genome-wide analysis highlights contribution of immune system pathways to the genetic architecture of asthma.	Asthma	84,492 European ancestry cases, 2,149 African American cases, 606 Hispanic cases, 1,239 Japanese ancestry cases, 437,036 European ancestry controls, 6,055 African American controls, 792 Hispanic controls, 3,976 Japanese ancestry controls	NR	3q29	NRROS	rs7636495-G	0.82	2E-16				NR [> 9500000] (imputed)	N
2083	chr3	196368190	196368191	rs11185551	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q29		rs11185551-?	NR	7E-21				NR [~ 8900000] (imputed)	N
2083	chr3	196368500	196368501	rs12152276	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	3q29	PIGX, NRROS	rs12152276-G	0.08124	2E-18		0.035291273	[0.027-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
2083	chr3	196368500	196368501	rs12152276	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	3q29		rs12152276-?	NR	7E-10				NR [~ 8900000] (imputed)	N
2083	chr3	196372545	196372546	rs80064395	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	3q29	FBXO45, CEP19	rs80064395-C	0.94	2E-12		1.07	[1.05-1.09]	Affymetrix, Illumina [8307659] (imputed)	N
2083	chr3	196373036	196373037	rs9823810	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Clostridium M sp001304855 abundance in stool	5,959 Finnish ancestry individuals	NA	3q29		rs9823810-C	0.31191	1E-8		0.0485335	[0.032-0.065] unit decrease	Illumina [7980478] (imputed)	N
2083	chr3	196373581	196373582	rs4916533	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	3q29	NR	rs4916533-C	0.91931	6E-10		1.0707784	[1.05-1.09]	Affymetrix [15688218] (imputed)	N
2083	chr3	196373581	196373582	rs4916533	29785011	Zhu Z	2018-05-21	Nat Genet	A genome-wide cross-trait analysis from UK Biobank highlights the shared genetic architecture of asthma and allergic diseases.	Asthma or allergic disease (pleiotropy)	14,085 European asthma cases, 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls	NA	3q29	NRROS	rs4916533-?	NR	2E-8		1.0752687		NR [74888535] (imputed)	N
2083	chr3	196377050	196377051	rs112669193	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Atopic asthma	23,982 European ancestry cases, 393,169 European ancestry controls	NA	3q29	NR	rs112669193-?	NR	8E-9				Affymetrix [~ 8270000] (imputed)	N
2083	chr3	196405135	196405136	rs1684460	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	C3orf34	rs1684460-?	NR	1E-6	(kynurenic acid)	0.22202429	[0.13-0.31] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2083	chr3	196438825	196438826	rs7639719	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	PIGX	rs7639719-?	NR	5E-6	(TAG 54:4)	0.35199216	[0.2-0.5] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2083	chr3	196469981	196469982	rs2686600	31666681	Zhao B	2019-10-30	Mol Psychiatry	Large-scale GWAS reveals genetic architecture of brain white matter microstructure and genetic overlap with cognitive and mental health traits (n = 17,706).	White matter microstructure (radial diusivities)	17,706 European ancestry individuals	NA	3q29	NR	rs2686600-?		1E-8	(Hippocampus )			NR [8955960] (imputed)	N
2084	chr3	196482210	196482211	rs843532	25524916	Palmer ND	2014-12-18	Diabetes	Genetic Variants Associated With Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.	Glucose homeostasis traits	up to 4,176 Mexican American individuals	NA	3q29	PAK2	rs843532-?		9E-6	(SI+M)	0.29	[0.055-0.525] unit increase	Illumina [693128]	N
2084	chr3	196489421	196489422	rs13434265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	3q29		rs13434265-T	NR	1E-28		0.0235	[0.019-0.028] unit decrease	Affymetrix, Illumina [20531031] (imputed)	N
2084	chr3	196489421	196489422	rs13434265	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	3q29		rs13434265-T	NR	3E-21		0.0197	[0.016-0.024] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
2084	chr3	196489421	196489422	rs13434265	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	3q29		rs13434265-C	0.585	1E-17				Affymetrix [10369434] (imputed)	N
2084	chr3	196489421	196489422	rs13434265	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Basophil count	234,678 European ancestry individuals	100,513 European ancestry individuals	3q29		rs13434265-C	0.585	9E-10				Affymetrix [10369434] (imputed)	N
2084	chr3	196489421	196489422	rs13434265	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin concentration	642,173 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs13434265-T	0.382395	2E-18				Affymetrix, Illumina [21126107] (imputed)	N
2084	chr3	196489421	196489422	rs13434265	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	3q29	PAK2	rs13434265-T	0.416	9E-17		0.0303966	[0.023-0.038] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196494701	196494702	rs9872035	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	3q29	PAK2	rs9872035-C	0.45	2E-8	(EA)	1.04	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
2084	chr3	196497600	196497603	rs63340160	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	3q29	PAK2	rs63340160-T	0.555707	6E-9		0.013103577	[0.0087-0.0175] unit increase	Affymetrix [93095623] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	3q29		rs2089979-A	0.584	1E-14				Affymetrix [10369434] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte counts	234,778 European ancestry individuals	100,554 European ancestry individuals	3q29		rs2089979-A	0.584	1E-24				Affymetrix [10369434] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	3q29	PAK2	rs2089979-G	0.416145	3E-55		0.03520556	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte counts	408,112 British individuals	NA	3q29	PAK2	rs2089979-G	0.416103	2E-56		0.035529993	[0.031-0.04] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	643,370 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs2089979-G	0.392606	2E-75				Affymetrix, Illumina [23472807] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	3q29	NR	rs2089979-G	0.414403	4E-72		0.034539	[0.031-0.038] SD unit decrease	Affymetrix, Illumina [50265552] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	3q29	NR	rs2089979-G	0.415685	3E-11		0.013908	[0.0098-0.018] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
2084	chr3	196501412	196501413	rs2089979	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	3q29		rs2089979-?	NR	3E-46				NR [~ 8900000] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	3q29		rs7626444-C	NR	5E-33		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	3q29		rs7626444-C	NR	3E-14		0.0165	[0.012-0.021] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	3q29		rs7626444-C	NR	1E-37		0.0275	[0.023-0.032] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	3q29	PAK2	rs7626444-C	0.422932	2E-22		0.021869058	[0.017-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	3q29	PAK2	rs7626444-C	0.422969	2E-39		0.029420929	[0.025-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs7626444-C	0.39967	2E-70				Affymetrix, Illumina [24649327] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs7626444-C	0.406605	9E-24				Affymetrix, Illumina [23114412] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	3q29	NR	rs7626444-C	0.4215	1E-26		0.020801	[0.017-0.025] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs7626444-C	0.405526	1E-49				Affymetrix, Illumina [23467995] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	3q29	NR	rs7626444-C	0.421355	6E-52		0.028712	[0.025-0.032] SD unit decrease	Affymetrix, Illumina [50262088] (imputed)	N
2084	chr3	196504901	196504902	rs7626444	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	3q29	PAK2	rs7626444-C	0.4242	2E-10		0.02319992	[0.016-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196506152	196506153	rs9325377	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	3q29	PAK2	rs9325377-G	0.522818	1E-15		0.017828042	[0.013-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196508550	196508551	rs7630852	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Eosinophil counts	172,275 European ancestry individuals	NA	3q29	PAK2	rs7630852-A	0.5542	2E-9		0.02171766	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196511108	196511109	rs11294619	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	3q29	PAK2	rs11294619-T	0.4968	3E-18		0.03266217	[0.025-0.04] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196511108	196511109	rs11294619	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	3q29	PAK2	rs11294619-T	0.4966	4E-11		0.02457575	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196511869	196511870	rs10440165	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Basophil count	408,112 British individuals	NA	3q29	RNU6-42P	rs10440165-T	0.552148	5E-9		0.013086555	[0.0087-0.0175] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	3q29		rs13092376-C	NR	2E-16		0.0162	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total bilirubin levels	341,077 European ancestry individuals, 5,978 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	3q29	NR	rs13092376-C	NR	1E-10		0.0157	[0.011-0.02] unit increase	Affymetrix [9000000] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red cell distribution width	408,112 British individuals	NA	3q29	PAK2	rs13092376-C	0.417392	4E-11		0.014907009	[0.01-0.019] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	3q29	PAK2	rs13092376-C	0.417405	1E-42		0.031265292	[0.027-0.036] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs13092376-C	0.386793	9E-34				Affymetrix, Illumina [24588908] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	3q29	NR	rs13092376-C	0.414983	8E-35		0.022865	[0.019-0.027] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	577,663 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	3q29	NR	rs13092376-C	0.395235	9E-11				Affymetrix, Illumina [19905671] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	3q29		rs13092376-?	NR	1E-14				NR [~ 8900000] (imputed)	N
2084	chr3	196516287	196516288	rs13092376	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte counts	171,643 European ancestry individuals	NA	3q29	PAK2	rs13092376-C	0.4194	3E-22		0.03564678	[0.028-0.043] unit decrease	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196518622	196518623	rs9829114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	3q29	PAK2	rs9829114-A	0.416781	5E-23		0.022527358	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196518622	196518623	rs9829114	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	3q29	PAK2	rs9829114-A	0.416853	1E-29		0.02568903	[0.021-0.03] unit decrease	Affymetrix [93095623] (imputed)	N
2084	chr3	196518622	196518623	rs9829114	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	3q29	NR	rs9829114-A	0.414149	7E-72		0.033578	[0.03-0.037] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
2084	chr3	196518793	196518793	rs11401261	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin concentration	408,112 British individuals	NA	3q29	PAK2	rs11401261-CA	0.407331	3E-18		0.0204612	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
2084	chr3	196519877	196519878	rs7649045	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	3q29		rs7649045-T	0.406	7E-9		0.07	[0.04-0.09] % increase	Affymetrix [NR] (imputed)	N
2084	chr3	196519877	196519878	rs7649045	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	3q29	PAK2	rs7649045-C	0.59386	3E-12		0.016243458	[0.012-0.021] unit increase	Affymetrix [93095623] (imputed)	N
2084	chr3	196546528	196546529	rs10446497	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	3q29	NR	rs10446497-G	NR	9E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
2084	chr3	196549088	196549089	rs9829778	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	3q29		rs9829778-?	NR	3E-14				NR [~ 8900000] (imputed)	N
2084	chr3	196549088	196549089	rs9829778	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum eosinophil basophil counts	171,771 European ancestry individuals	NA	3q29	PAK2	rs9829778-A	0.4648	1E-10		0.0230922	[0.016-0.03] unit increase	Affymetrix [~ 2500000] (imputed)	N
2084	chr3	196553866	196553867	rs2084385	21116278	Furney SJ	2010-11-30	Mol Psychiatry	Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease.	Total ventricular volume (Alzheimer's disease interaction)	424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer's disease cases, 279 European ancestry controls	NA	3q29	PAK2	rs2084385-?	NR	5E-6		0.006	[NR] unit increase	Illumina [478011]	N
2085	chr3	196627512	196627513	rs4916578	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	3q29	SENP5	rs4916578-A	NR	7E-6		3.15	unit decrease	Illumina [6778521] (imputed)	N
2085	chr3	196668358	196668359	rs548853	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	3q29	NCBP2, NCBP2-AS2, PIGZ	rs548853-C	0.53	2E-17		0.2	[0.15-0.24] unit decrease	Affymetrix [339439]	N
2085	chr3	196672904	196672905	rs4916588	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Night sleep phenotypes	941 European ancestry individuals	NA	3q29	PIGZ, NCBP2-AS2, NCBP2, NCBP2-AS1, SENP5, MFI2	rs4916588-T	NR	9E-6	(number of awakenings after sleep onset)	0.1162	[0.065-0.167] unit decrease	Affymetrix [7141204] (imputed)	N
2085	chr3	196681474	196681475	rs116126306	31844061	Malaria Genomic Epidemiology Network	2019-12-16	Nat Commun	Insights into malaria susceptibility using genome-wide data on 17,000 individuals from Africa, Asia and Oceania.	Malaria	7,957 African ancestry cases, 7,746 African ancestry controls, 718 Asian ancestry cases, 546 Asian ancestry controls, 402 Oceanian cases, 374 Oceanian controls	NR	3q29	PIGZ, NCBP2-AS2, NCBP2, SENP5, MELTF, MFI2-AS1, PAK2	rs116126306-?		8E-6	(heterogeneous)	0.403	[0.23-0.58] unit increase	Illumina [1492601] (imputed)	N
2085	chr3	196719443	196719444	rs111232694	34417961	Guo D	2021-08-21	Biol Trace Elem Res	Preliminary study of genome-wide association identifies novel susceptibility genes for serum mineral elements in the Chinese Han population.	Calcium levels	587 Han Chinese ancestry individuals	NA	3q29		rs111232694-?	NR	4E-6		0.073	[-0.78156-0.92756] unit decrease	Affymetrix [6423076] (imputed)	N
2086	chr3	196743129	196743130	rs6779362	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	DLG1	rs6779362-?	NR	5E-6	(adipic acid)	0.22572109	[0.13-0.32] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2086	chr3	196753354	196753355	rs4916598	33407418	Jonsson A	2021-01-06	BMC Med Genomics	Genome-wide association study of circulating levels of glucagon during an oral glucose tolerance test.	Glucagon levels in response to oral glucose tolerance test (fasting)	553 European ancestry individuals, 1,346 individuals	NA	3q29	NR	rs4916598-T	0.5235	4E-6		0.1587	[0.091-0.226] unit increase	Illumina [NR] (imputed)	N
2086	chr3	196773133	196773134	rs12495674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	3q29		rs12495674-?	NR	4E-8				NR [~ 8900000] (imputed)	N
2086	chr3	196777237	196777237	rs71161992	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	3q29	DLG1	rs71161992-CA	NR	5E-8		0.0159991	[0.01-0.022] unit increase	Affymetrix [321114] (imputed)	N
2086	chr3	196788362	196788363	rs13327482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	3q29	Intergenic	rs13327482-A	0.8143	7E-10	(MTAG)	0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2086	chr3	196788362	196788363	rs13327482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	3q29	Intergenic	rs13327482-A	0.8143	4E-8		0.0137	[0.0088-0.0186] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2086	chr3	196788362	196788363	rs13327482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	3q29	Intergenic	rs13327482-A	0.8143	9E-14	(MTAG)	0.0158	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2086	chr3	196788362	196788363	rs13327482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q29		rs13327482-A	0.8221	4E-11		0.0121	[0.0086-0.0156] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
2086	chr3	196788362	196788363	rs13327482	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	3q29	Intergenic	rs13327482-A	0.8221	1E-12	(MTAG)	0.0122	[0.0089-0.0155] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
2086	chr3	196799232	196799250	rs143879787	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	3q29	DLG1	rs143879787-I	0.73	1E-9		0.51	[0.35-0.67] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2086	chr3	196799232	196799250	rs143879787	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals	NA	3q29	DLG1	rs143879787-I	0.7258	7E-9		0.5103	[0.34-0.68] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
2086	chr3	196803646	196803647	rs12632559	34242216	Ray D	2021-07-09	PLoS Genet	Pleiotropy method reveals genetic overlap between orofacial clefts at multiple novel loci from GWAS of multi-ethnic trios.	Cleft lip with or without cleft palate or cleft palate (pleiotropy)	300 Asian ancestry cleft lip trios, 299 European ancestry cleft lip trios, 89 Latin American cleft lip trios, 6 cleft lip trios, 875 Asian ancestry cleft lip with cleft palate trios, 679 European ancestry cleft lip with cleft palate trios, 508 Latin American cleft lip with cleft palate trios, 15 cleft lip with cleft palate trios, 273 Asian ancestry cleft palate trios, 296 European ancestry cleft palate trios, 28 Latin American cleft palate trios, 14 cleft palate trios	NA	3q29		rs12632559-C	0.42	5E-7				Illumina [6761961] (imputed)	N
2086	chr3	196806179	196806180	rs3773842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	3q29	DLG1	rs3773842-G	NR	2E-8		0.0159271	[0.01-0.021] unit increase	Affymetrix [319769] (imputed)	N
2086	chr3	196806179	196806180	rs3773842	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	3q29	DLG1	rs3773842-G	NR	1E-8		0.0161877	[0.011-0.022] unit increase	Affymetrix [319769] (imputed)	N
2086	chr3	196813907	196813908	rs3843375	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	3q29	NR	rs3843375-A	0.4047	2E-7		0.0104	[0.0065-0.0143] unit increase	NR [~ 27400000] (imputed)	N
2087	chr3	196876599	196876600	rs73210523	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	3q29		rs73210523-A	0.1722	6E-11	(conditional-joint)	0.0122	[0.0085-0.0159] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
2087	chr3	196887239	196887239	rs11461979	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	3q29	DLG1	rs11461979-T	0.7351	1E-10		0.0143	[0.01-0.0186] unit decrease	Affymetrix [18391927] (imputed)	N
2087	chr3	196906073	196906074	rs13070996	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	3q29	DLG1	rs13070996-G	0.721995	3E-12		0.0143342	[0.01-0.018] unit increase	NR [13737936] (imputed)	N
2087	chr3	196906073	196906074	rs13070996	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	3q29		rs13070996-?	NR	1E-13				NR [~ 8900000] (imputed)	N
2087	chr3	196906073	196906074	rs13070996	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	3q29		rs13070996-?	NR	3E-11		0.0146126	[0.01-0.019] unit increase	Affymetrix [20259828] (imputed)	N
2087	chr3	196911360	196911361	rs12152266	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	3q29		rs12152266-?	NR	7E-17				NR [~ 8900000] (imputed)	N
2087	chr3	196931820	196931821	rs7649443	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	3q29	NR	rs7649443-G	0.73	9E-6		1.1627907	[NR]	Illumina [803202]	N
2087	chr3	196946646	196946647	rs34381158	35132056	Mitchell BL	2022-02-07	Nat Commun	Genome-wide association meta-analysis identifies 29 new acne susceptibility loci.	acne vulgaris	20,165 European ancestry cases, 595,231 European ancestry controls	NA	3q29	NR	rs34381158-G	0.326	2E-9		1.08	[1.05-1.11]	Affymetrix, Illumina [7072771] (imputed)	N
2087	chr3	196966819	196966820	rs13077565	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	3q29		rs13077565-T	NR	3E-12		0.0122	[0.0089-0.0155] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
2087	chr3	196979105	196979106	rs6782581	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	3q29		rs6782581-C	0.56	2E-10				NR [NR] (imputed)	N
2087	chr3	196979105	196979106	rs6782581	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	3q29		rs6782581-C	0.56	9E-12		0.01	% increase	NR [NR] (imputed)	N
2087	chr3	196997147	196997148	rs62282106	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	3q29		rs62282106-T	0.27	9E-10		6.12	z score increase	Affymetrix [9061022] (imputed)	N
2088	chr3	197021145	197021146	rs6782876	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Urinary tract infection frequency	35,000 European ancestry cases, 33,478 European ancestry controls	NA	3q29	NR	rs6782876-?	NR	9E-6		0.0355	[0.02-0.051] unit decrease	Illumina [at least 560000] (imputed)	N
2088	chr3	197060991	197060992	rs61629536	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	3q29	NR	rs61629536-T	0.01916	3E-8	(EPHX1)	3.6	NR unit increase	Illumina [1671387] (imputed)	N
2088	chr3	197070958	197070959	rs6777317	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	3q29	DLG1	rs6777317-A	0.2949	8E-12		0.1147	[0.082-0.148] mmHg increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
2088	chr3	197075742	197075743	rs10049467	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	3q29	NR	rs10049467-?	NR	3E-6		0.11324	[0.066-0.16] unit decrease	Affymetrix [9658292] (imputed)	N
2088	chr3	197077803	197077804	rs4916473	29594489	Apewokin S	2018-03-28	Support Care Cancer	Host genetic susceptibility to Clostridium difficile infections in patients undergoing autologous stem cell transplantation: a genome-wide association study.	Clostridium difficile infection in multiple myeloma	57 European ancestry cases, 589 European ancestry controls	NA	3q29	NR	rs4916473-?		5E-8				Illumina [892589]	N
2088	chr3	197079585	197079586	rs6583203	25085501	Bunyavanich S	2014-08-02	BMC Med Genomics	Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.	Allergic rhinitis	872 European ancestry cases, 1,193 Latino cases, 647 African American/Afro-Caribbean cases, 1,162 European ancestry controls, 1,133 Latino controls, 626 African American/Afro-Caribbean controls	NA	3q29	DLG1	rs6583203-?	NR	1E-8	(Latino)	1.65	[1.48-1.83]	Affymetrix, Illumina [NR] (imputed)	N
2088	chr3	197106408	197106409	rs9841147	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	3q29	NR	rs9841147-A		3E-6		0.1559	[0.09-0.222] unit increase	Illumina [12770451] (imputed)	N
2088	chr3	197108331	197108332	rs114431066	28762467	Wadelius M	2017-08-01	Clin Pharmacol Ther	Sulfasalazine-Induced Agranulocytosis Is Associated With the Human Leukocyte Antigen Locus.	Sulfasalazine-induced agranulocytosis	36 European ancestry cases, 5,170 European ancestry untreated controls	NA	3q29	intergenic	rs114431066-?	NR	3E-7		8.64	[3.77-19.79]	Illumina [9380034] (imputed)	N
2089	chr3	197136821	197136822	rs13072484	29724592	Pottier C	2018-04-30	Lancet Neurol	Potential genetic modifiers of disease risk and age at onset in patients with frontotemporal lobar degeneration and GRN mutations: a genome-wide association study.	Frontotemporal dementia with GRN mutation	382 European ancestry cases, 1,146 European ancestry controls	67 European ancestry cases, 1,798 European ancestry controls	3q29	BDH1	rs13072484-A	0.78	1E-6		1.51	[1.28-1.78]	Illumina [7033776] (imputed)	N
2089	chr3	197190008	197190009	rs2567345	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		AC128709.3	rs2567345-?	NR	6E-10		1.16257	[NR] unit decrease	Affymetrix [NR] (imputed)	N
2089	chr3	197260635	197260644	rs781765645	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	3q29	BDH1	rs781765645-T	0.0018	5E-6		0.7159	[0.41-1.02] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
2089	chr3	197262760	197262761	rs35359187	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	3q29	NR	rs35359187-T	0.09629	5E-6		0.2356	[0.17-0.3] unit decrease	Illumina [10677593] (imputed)	N
2090	chr3	197265433	197265434	rs11919456	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	3q29	NR	rs11919456-?	NR	7E-7	(AA)	0.3125	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
2090	chr3	197268568	197268569	rs2484	28560309	Lee E	2017-04-23	Alzheimers Dement (Amst)	Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients.	Accelerated cognitive decline after conversion of mild cognitive impairment to Alzheimer's disease (Alzhiemer's diagnosis trajectory interaction)	242 European ancestry individuals	NA	3q29	BDH1	rs2484-?		3E-6		4.53	[2.69-6.37] unit increase	Illumina [5908215] (imputed)	N
2090	chr3	197299211	197299212	rs111741661	31626034	Thomsen H	2019-10-11	Melanoma Res	Genome-wide study on uveal melanoma patients finds association to DNA repair gene TDP1.	Disease severity in uveal melanoma (TNM stage 3 or 4 vs TNM stage 1 or 2)	330 European ancestry stage 3 or 4 cases, 255 European ancestry stage 1 or 2 cases	NA	3q29		rs111741661-G	0.84	3E-6		2.66		Illumina [10258281] (imputed)	N
2090	chr3	197304278	197304279	rs2686097	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	3q29	NR	rs2686097-?	NR	6E-14		7.499	NR z score decrease	Illumina [at least 830937] (imputed)	N
2092	chr3	197581146	197581147	rs9863587	25514360	Hansel NN	2014-12-16	Am J Respir Cell Mol Biol	Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease.	Airway responsiveness in chronic obstructive pulmonary disease	Up to 4,108 European American cases	NA	3q29	LRCH3	rs9863587-?	0.624	7E-6	(Dichotomous PC20)	1.25	[NR]	Illumina [546355]	N
2092	chr3	197639380	197639381	rs9809736	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	3q29	RPL35A	rs9809736-?	NR	9E-6	(PC 36:3)	0.17666937	[0.099-0.255] unit decrease	Affymetrix [at least 2500000] (imputed)	N
2093	chr3	197719184	197719185	rs9813476	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (total iron binding capacity)	12,586 Hispanic/Latino individuals	NA	3q29	LMLN	rs9813476-C	NR	3E-7		0.302	[0.19-0.42] unit decrease	Illumina [27700000] (imputed)	N
585	chr4	48356	48357	rs2859208	28927378	Qian DC	2017-09-19	BMC Genomics	Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.	Caudate activity during reward	106 individuals	NA	4p16.3	NR	rs2859208-T	0.432638	9E-6		0.88785464	[0.52-1.26] unit increase	Illumina [at least 621854] (imputed)	N
585	chr4	82320	82321	rs2187874	30166627	Massey J	2018-08-31	Pharmacogenomics J	Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis.	Response to TNF inhibitor in rheumatoid arthritis (change in tender 28-joint count)	551 European ancestry individuals treated with adalimumab, 619 European ancestry individuals treated with etanercept, 434 European ancestry individuals treated with infliximab, 119 European ancestry individuals treated with other TNF inhibitors	NA	4p16.3	ZNF595, ZNF718	rs2187874-?		7E-8	(All TNF inhibitors combined)	0.19	[0.11-0.27] unit decrease	Affymetrix, Illumina [9814288] (imputed)	N
586	chr4	155654	155655	rs144152312	32232851	Deguchi H	2020-03-30	Br J Haematol	Novel exomic rare variants associated with venous thrombosis.	Venous thromboembolism	104 European ancestry cases, 211 European ancestry controls	NA	4p16.3	ZNF718	rs144152312-?	0.014	9E-6				Illumina [308166]	N
586	chr4	234361	234362	rs142700748	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Cerebrospinal fluid immune biomarker levels	114 Scandinavian ancestry bipolar disorder cases, 83 Scandinavian ancestry controls	NA	4p16.3	ZNF876P	rs142700748-T	0.975	3E-9	(IL-8)	20.461	NR unit decrease	Affymetrix, Illumina [> 5600000] (imputed)	N
586	chr4	261155	261156	rs7688540	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 6, height of vermillion lower lip)	2,187 European ancestry individuals	NA	4p16.3	NR	rs7688540-G	0.2123	2E-6		0.1771	[0.099-0.256] unit decrease	Illumina [10677593] (imputed)	N
587	chr4	282498	282499	rs11723261	22542470	Ovsyannikova IG	2012-04-25	Vaccine	Genome-wide association study of antibody response to smallpox vaccine.	Immune response to smallpox vaccine (IL-6)	217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals	NA	4p16.3	LOC654254	rs11723261-?		4E-6	(EA)			Illumina [NR]	N
589	chr4	536425	536426	rs75536499	30276832	Edwards AC	2018-10-01	Alcohol Clin Exp Res	Meta-Analysis of Genetic Influences on Initial Alcohol Sensitivity.	Initial alcohol sensitivity	6,039 European ancestry individuals, 892 African ancestry individuals, 408 American ancestry individuals	NA	4p16.3	PIGG	rs75536499-?	NR	7E-7				Affymetrix, Illumina [15642250] (imputed)	N
589	chr4	568530	568531	rs555679270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	4p16.3		rs555679270-A	5.61942E-4	2E-8		40.18497	[26.06-54.31] unit increase	Illumina [13428559] (imputed)	N
589	chr4	568530	568531	rs555679270	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Retinitis pigmentosa	121 European ancestry cases, 126,333 European ancestry controls, 155 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	4p16.3		rs555679270-A	NR	2E-8		40.185	[26.06-54.31] unit increase	Illumina [23539365] (imputed)	N
589	chr4	591472	591473	rs35476224	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p16.3	NR	rs35476224-?	NR	1E-7		0.3139	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
589	chr4	616607	616608	rs111827885	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.3	PCGF3	rs111827885-C	0.0156	8E-6		1.18	[1.10-1.27]	Affymetrix, Illumina [~ 27000000] (imputed)	N
590	chr4	696847	696848	rs12646225	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4p16.3	NR	rs12646225-C	0.111332	2E-10		0.06356121	[0.044-0.083] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
590	chr4	696847	696848	rs12646225	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4p16.3	Intergenic	rs12646225-T	0.1055	1E-10		0.0298	[0.021-0.039] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
590	chr4	696847	696848	rs12646225	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p16.3	NR	rs12646225-T	NR	3E-9		5.961	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
590	chr4	696847	696848	rs12646225	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.3	PCGF3	rs12646225-T	NR	5E-8		5.464	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
590	chr4	698291	698292	rs6837180	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.3	PCGF3	rs6837180-A	0.4163	3E-10		0.0127	[0.0088-0.0166] unit decrease	Affymetrix [18391927] (imputed)	N
590	chr4	701040	701041	rs75751670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p16.3	Intergenic	rs75751670-A	0.0841	2E-12	(MTAG)	0.021	[0.015-0.027] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr4	701040	701041	rs75751670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.3	Intergenic	rs75751670-A	0.0808	6E-12	(MTAG)	0.0169	[0.012-0.022] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr4	701040	701041	rs75751670	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p16.3	Intergenic	rs75751670-A	0.0756	3E-14	(MTAG)	0.0329	[0.024-0.041] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
590	chr4	701326	701327	rs142708984	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p16.3		rs142708984-T	NR	1E-15		0.021	[0.016-0.026] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
590	chr4	701326	701327	rs142708984	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p16.3	Intergenic	rs142708984-C	0.8141	5E-9		0.0147	[0.0098-0.0196] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
590	chr4	701758	701759	rs55993550	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4p16.3	PCGF3	rs55993550-T	NR	7E-6		0.0290761	[0.016-0.042] unit decrease	Illumina [13519193] (imputed)	N
590	chr4	702971	702972	rs56011263	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4p16.3		rs56011263-T	0.612	7E-11				Affymetrix [10369434] (imputed)	N
590	chr4	702971	702972	rs56011263	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p16.3		rs56011263-?	NR	1E-20				NR [~ 8900000] (imputed)	N
590	chr4	702971	702972	rs56011263	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	White blood cell count	172,435 European ancestry individuals	NA	4p16.3	PCGF3	rs56011263-C	0.3866	5E-9		0.02156262	[0.014-0.029] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705073	705074	rs11734460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA	4p16.3	PCGF3	rs11734460-T	0.3122	4E-11		0.02563131	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705073	705074	rs11734460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA	4p16.3	PCGF3	rs11734460-T	0.3121	2E-11		0.02589432	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705073	705074	rs11734460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA	4p16.3	PCGF3	rs11734460-T	0.3121	1E-11		0.02609489	[0.019-0.034] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705073	705074	rs11734460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA	4p16.3	PCGF3	rs11734460-T	0.3121	1E-9		0.02373909	[0.016-0.031] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705073	705074	rs11734460	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA	4p16.3	PCGF3	rs11734460-T	0.3122	7E-11		0.02531494	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	705628	705629	rs150537577	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs150537577-A	0.9195	1E-8		0.0151	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
590	chr4	705883	705884	rs79839061	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4p16.3	PCGF3	rs79839061-A	NR	1E-8		0.032876138	[0.022-0.044] unit increase	Affymetrix [NR]	N
590	chr4	706699	706700	rs35734242	33385171	Hagg S	2020-12-31	Hum Genet	Deciphering the genetic and epidemiological landscape of mitochondrial DNA abundance.	Mitochondrial DNA levels	295,150 European ancestry individuals	NA	4p16.3	NR	rs35734242-C	0.4414	4E-8		0.0142637	[0.0092-0.0194] unit decrease	Affymetrix [3505788] (imputed)	N
590	chr4	706699	706700	rs35734242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p16.3	PCGF3	rs35734242-C	0.427947	6E-22		0.02149879	[0.017-0.026] unit increase	Affymetrix [93095623] (imputed)	N
590	chr4	706699	706700	rs35734242	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4p16.3	PCGF3	rs35734242-C	0.42793	8E-28		0.02444793	[0.02-0.029] unit increase	Affymetrix [93095623] (imputed)	N
590	chr4	706699	706700	rs35734242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs35734242-C	0.434888	2E-26				Affymetrix, Illumina [24649327] (imputed)	N
590	chr4	706699	706700	rs35734242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4p16.3	NR	rs35734242-C	0.427987	6E-29		0.02176	[0.018-0.026] SD unit increase	Affymetrix, Illumina [50601830] (imputed)	N
590	chr4	706699	706700	rs35734242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs35734242-C	0.431375	4E-28				Affymetrix, Illumina [23114412] (imputed)	N
590	chr4	706699	706700	rs35734242	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4p16.3	NR	rs35734242-C	0.427831	5E-31		0.023416	[0.019-0.027] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
590	chr4	708241	708242	rs28743077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	PCGF3	rs28743077-T	NR	2E-8		0.0250391	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
590	chr4	708241	708242	rs28743077	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	PCGF3	rs28743077-T	NR	2E-8		0.0250854	[0.016-0.034] unit increase	Affymetrix [319769] (imputed)	N
590	chr4	709144	709145	rs13126245	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4p16.3		rs13126245-C	NR	2E-19		0.0221	[0.017-0.027] unit increase	Affymetrix, Illumina [20526770] (imputed)	N
590	chr4	714888	714889	rs116446669	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.3		rs116446669-?	NR	3E-57				NR [~ 8900000] (imputed)	N
590	chr4	719659	719660	rs4690294	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p16.3	PCGF3	rs4690294-G	0.314822	5E-28		0.026290674	[0.022-0.031] unit decrease	Affymetrix [93095623] (imputed)	N
590	chr4	719714	719715	rs4690295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4p16.3	PCGF3	rs4690295-G	0.3151	2E-10		0.02426741	[0.017-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
590	chr4	719714	719715	rs4690295	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	4p16.3	PCGF3	rs4690295-G	0.3152	2E-11		0.02588037	[0.018-0.033] unit increase	Affymetrix [~ 2500000] (imputed)	N
590	chr4	720680	720681	rs73221116	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p16.3		rs73221116-A	NR	4E-9		0.0327	[0.022-0.043] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
590	chr4	720680	720681	rs73221116	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs73221116-G	0.9577	2E-19		0.0955	[0.075-0.116] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
590	chr4	729324	729326	rs59218457	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p16.3	PCGF3	rs59218457-A	0.358647	4E-17		0.01937596	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
590	chr4	729654	729655	rs79713586	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p16.3	Intergenic	rs79713586-A	0.9207	8E-11	(MTAG)	0.0216	[0.015-0.028] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
590	chr4	735149	735150	rs4234853	22443383	Oudot-Mellakh T	2012-01-16	Br J Haematol	Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.	Hemostatic factors and hematological phenotypes	951 European ancestry individuals	NA	4p16.3	PCGF3	rs4234853-A	0.27	6E-6	(PS levels)	4.88	[2.76-7.00] iu/ml decrease	Illumina [472123]	N
590	chr4	744097	744098	rs9332466	33169155	Bigdeli TB	2020-11-10	Schizophr Bull	Genome-Wide Association Studies of Schizophrenia and Bipolar Disorder in a Diverse Cohort of US Veterans.	Schizophrenia	44,794 European ancestry cases, 7,509 African American cases, 1,234 Latino cases, 112,777 European ancestry controls, 8,337 African American controls, 3,090 Latino controls	NA	4p16.3	PCGF3	rs9332466-T	NR	2E-9		1.06	[1.04-1.08]	Affymetrix [up to 49134253] (imputed)	N
590	chr4	744971	744972	rs1531583	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p16.3	NR	rs1531583-G	0.9553	7E-19		0.0994	[0.077-0.121] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
590	chr4	744971	744972	rs1531583	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.3	PCGF3	rs1531583-T	0.0458	4E-14		1.13	[1.09-1.16]	Affymetrix, Illumina [~ 27000000] (imputed)	N
590	chr4	748123	748124	rs142971131	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	PCGF3	rs142971131-G	0.996749	6E-17		0.0869218	[0.067-0.107] unit increase	NR [13737936] (imputed)	N
590	chr4	748123	748124	rs142971131	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs142971131-?	NR	9E-22		0.112853	[0.09-0.136] unit increase	Affymetrix [20259828] (imputed)	N
590	chr4	783692	783693	rs13130280	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p16.3		rs13130280-?	NR	1E-7				NR [~ 8900000] (imputed)	N
591	chr4	812012	812013	rs80189576	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.3		rs80189576-?	NR	3E-14				NR [~ 8900000] (imputed)	N
591	chr4	824987	824988	rs4690319	33393726	Ortiz Fernandez L	2021-01-04	Arthritis Rheumatol	Genetic association of a gain of function interferon gamma receptor 1 (IFNGR1) polymorphism and the intergenic region LNCAROD/DKK1 with Behcet's disease.	Behcet's disease	2,344 Turkish ancestry cases, 1,920 Turkish ancestry controls, 437 European ancestry cases, 3,325 European ancestry controls, 312 East Asian ancestry cases, 398 East Asian ancestry controls, 104 Tunisian ancestry cases, 142 Tunisian ancestry controls	NA	4p16.3	CPLX1	rs4690319-A	NR	2E-6		0.8259	NR	Illumina [up to 1244428] (imputed)	N
591	chr4	831180	831181	rs11736866	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	CPLX1	rs11736866-G	0.840531	2E-9		0.0155023	[0.01-0.021] unit decrease	NR [13737936] (imputed)	N
591	chr4	837809	837810	rs76839318	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p16.3	NR	rs76839318-A	0.09	1E-5	(IFNgamma_STAT1_of_CD8p_T)			Illumina [5084123] (imputed)	N
591	chr4	852312	852313	rs1564282	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p16.3	GAK	rs1564282-T	0.0934	1E-11		0.0224	[0.016-0.029] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
591	chr4	852312	852313	rs1564282	18985386	Pankratz N	2008-11-06	Hum Genet	Genomewide association study for susceptibility genes contributing to familial Parkinson disease.	Parkinson's disease (familial)	1,119 European ancestry cases, 1,127 European ancestry controls	NA	4p16.3	GAK, DGKQ	rs1564282-T	0.09	7E-7		1.7	[NR]	Illumina [328189]	N
591	chr4	856101	856102	rs115550031	27639821	Scherag A	2016-09-15	EBioMedicine	Genetic Factors of the Disease Course after Sepsis: A Genome-Wide Study for 28Day Mortality.	Mortality in sepsis	149 European ancestry cases, 591 European ancestry controls	up to 2,534 individuals	4p16.3	GAK	rs115550031-A	0.02	2E-6	(European)	13.8		Illumina [7993459] (imputed)	N
591	chr4	858331	858332	rs11248051	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p16.3	GAK	rs11248051-T	0.0929	2E-8		0.0183	[0.012-0.025] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
591	chr4	858331	858332	rs11248051	20711177	Hamza TH	2010-08-15	Nat Genet	Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease.	Parkinson's disease	2,000 European ancestry cases, 1,986 European ancestry controls	Up to 1,447 cases, 1,468 controls	4p16.3	GAK	rs11248051-T	0.09	3E-9		1.46	[1.29-1.65]	Illumina [811597]	N
591	chr4	873286	873290	rs35541465	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	4p16.3	GAK	rs35541465-?	NR	3E-15		1.1560693	[1.12-1.20]	Illumina [12438219] (imputed)	N
591	chr4	873416	873417	rs58036322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	GAK	rs58036322-G	NR	1E-10		0.0202677	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
591	chr4	873416	873417	rs58036322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	GAK	rs58036322-G	NR	2E-10		0.0199997	[0.014-0.026] unit decrease	Affymetrix [319769] (imputed)	N
591	chr4	873416	873417	rs58036322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.3	GAK	rs58036322-G	NR	3E-9		0.0186915	[0.012-0.025] unit decrease	Affymetrix [321114] (imputed)	N
591	chr4	873416	873417	rs58036322	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	GAK	rs58036322-G	NR	3E-9		0.0188708	[0.013-0.025] unit decrease	Affymetrix [321169] (imputed)	N
591	chr4	881227	881228	rs4690203	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	NR	rs4690203-T	0.137	4E-34	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.46	[0.38-0.54] unit decrease	Affymetrix [10572788] (imputed)	N
591	chr4	882403	882404	rs2279183	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs2279183-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
591	chr4	893912	893913	rs3822024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	GAK	rs3822024-A	NR	8E-10		0.0186778	[0.013-0.025] unit decrease	Affymetrix [319769] (imputed)	N
591	chr4	893912	893913	rs3822024	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	GAK	rs3822024-A	NR	2E-9		0.0182694	[0.012-0.024] unit decrease	Affymetrix [319769] (imputed)	N
591	chr4	894254	894255	rs3755963	31189108	O'Connor D	2019-06-01	Cell Rep	Common Genetic Variations Associated with the Persistence of Immunity following Childhood Immunization.	Meningococcal C IgG concentrations post childhood immunization	1,203 European ancestry children and adolescents	980 European ancestry children and adolescents	4p16.3	NR	rs3755963-C	NR	9E-7		0.1412	[0.085-0.197] unit decrease	Illumina [~ 6700000] (imputed)	N
591	chr4	906130	906131	rs11248057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.3	GAK	rs11248057-G	NR	3E-8		0.0180816	[0.012-0.025] unit increase	Affymetrix [321114] (imputed)	N
591	chr4	906130	906131	rs11248057	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	GAK	rs11248057-G	NR	6E-9		0.0191334	[0.013-0.026] unit increase	Affymetrix [321169] (imputed)	N
592	chr4	923260	923261	rs75025717	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IDUA	5,366 Icelandic ancestry individuals	NA	4p16.3		rs75025717-A	0.009813	9E-13		0.68235	[0.5-0.87] unit decrease	Illumina [7506463] (imputed)	N
592	chr4	925375	925376	rs873786	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4p16.3	GAK	rs873786-T	0.0988	2E-21		0.1731	[0.14-0.21] unit decrease	NR [7784415] (imputed)	N
592	chr4	935855	935855	rs34604457	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34604457-CT	NR	3E-8		0.0162575	[0.01-0.022] unit decrease	Affymetrix [321169] (imputed)	N
592	chr4	939086	939087	rs6599388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	TMEM175	rs6599388-T	NR	4E-13		0.0229045	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	939086	939087	rs6599388	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs6599388-T	NR	9E-13		0.0225567	[0.016-0.029] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	939086	939087	rs6599388	33589841	Chia R	2021-02-15	Nat Genet	Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.	Dementia with Lewy bodies	2,591 European ancestry cases, 4,027 European ancestry controls	970 European ancestry cases, 8,928 European ancestry controls	4p16.3		rs6599388-T	0.286	3E-9		1.15	[1.03-1.28]	NR [20137051]	N
592	chr4	939086	939087	rs6599388	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	4p16.3	GAK	rs6599388-T	0.31	4E-12		1.16	[1.12-1.20]	Illumina [7689524] (imputed)	N
592	chr4	939112	939113	rs6599389	21738487	Do CB	2011-06-23	PLoS Genet	Web-based genome-wide association study identifies two novel loci and a substantial genetic component for Parkinson's disease.	Parkinson's disease	3,426 European ancestry cases, 29,624 European ancestry controls	NA	4p16.3	GAK	rs6599389-A	0.075	4E-8		1.31	[1.19-1.44]	Illumina [522782]	N
592	chr4	941289	941290	rs6815138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	TMEM175	rs6815138-C	NR	5E-13		0.0206508	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	941289	941290	rs6815138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs6815138-C	NR	1E-12		0.0203865	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	941517	941518	rs2290402	25102180	Ng MC	2014-08-07	PLoS Genet	Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes.	Type 2 diabetes	8,284 African American cases, 15,543 African American controls	6,061 African American cases, 5,483 African American controls, 8,130 European ancestry cases, 38,987 European ancestry controls	4p16.3	TMEM175	rs2290402-?	NR	7E-6	(AA)			Affymetrix, Illumina [2579389] (imputed)	N
592	chr4	944209	944210	rs34884217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34884217-C	NR	4E-10		0.0280408	[0.019-0.037] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	944209	944210	rs34884217	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34884217-C	NR	7E-10		0.027659	[0.019-0.036] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	944209	944210	rs34884217	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4p16.3	TMEM175	rs34884217-A		1E-11		0.1915	[0.14-0.25] unit increase	Illumina [NR]	N
592	chr4	944209	944210	rs34884217	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs34884217-?	NR	3E-12				Affymetrix [~ 8270000] (imputed)	N
592	chr4	946973	946974	rs2290405	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Systemic sclerosis	1,833 European ancestry cases, 3,466 European ancestry controls, 291 African American cases, 260 African American controls	NA	4p16.3	SLC26A1, TMEM175, DGKQ	rs2290405-?		2E-6	(EA)			Illumina [~ 2500000] (imputed)	N
592	chr4	951178	951179	rs1051613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs1051613-G	NR	9E-10		0.0175302	[0.012-0.023] unit increase	Affymetrix [321114] (imputed)	N
592	chr4	951178	951179	rs1051613	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs1051613-G	NR	3E-10		0.0181006	[0.012-0.024] unit increase	Affymetrix [321169] (imputed)	N
592	chr4	951178	951179	rs1051613	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p16.3	NR	rs1051613-?	NR	1E-14				Affymetrix [~ 8270000] (imputed)	N
592	chr4	951946	951947	rs34311866	34064523	Rodrigo LM	2021-05-04	Genes (Basel)	Imputation and Reanalysis of ExomeChip Data Identifies Novel, Conditional and Joint Genetic Effects on Parkinson's Disease Risk.	Parkinson's disease	5,167 European ancestry cases, 5,366 European ancestry controls	NA	4p16.3	TMEM175	rs34311866-C	0.31849	6E-11		1.25164	[1.17023-1.33871}	Illumina [1465938] (imputed)	N
592	chr4	951946	951947	rs34311866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34311866-C	NR	2E-16		0.0306762	[0.023-0.038] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	951946	951947	rs34311866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34311866-C	NR	4E-16		0.0303462	[0.023-0.038] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	951946	951947	rs34311866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34311866-C	NR	6E-10		0.0231904	[0.016-0.031] unit increase	Affymetrix [321114] (imputed)	N
592	chr4	951946	951947	rs34311866	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	TMEM175	rs34311866-C	NR	3E-12		0.0262497	[0.019-0.034] unit increase	Affymetrix [321169] (imputed)	N
592	chr4	951946	951947	rs34311866	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	4p16.3	TMEM175, GAK, DGKQ	rs34311866-?	NR	7E-6				Illumina [5843213] (imputed)	N
592	chr4	951946	951947	rs34311866	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p16.3	NR	rs34311866-T	0.823863	6E-14		0.0112024	[0.008-0.0144] unit increase	Affymetrix [16585854] (imputed)	N
592	chr4	951946	951947	rs34311866	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p16.3	NR	rs34311866-T	0.823863	3E-9		0.0103976	[0.0067-0.0141] unit increase	Affymetrix [16585866] (imputed)	N
592	chr4	951946	951947	rs34311866	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4p16.3	TMEM175	rs34311866-T	0.8065	1E-69		0.2126	[0.19-0.24] unit decrease	NR [7784415] (imputed)	N
592	chr4	951946	951947	rs34311866	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs34311866-?	NR	4E-17				Affymetrix [~ 8270000] (imputed)	N
592	chr4	951946	951947	rs34311866	31660654	Bandres-Ciga S	2019-10-29	Mov Disord	The Genetic Architecture of Parkinson Disease in Spain: Characterizing Population-Specific Risk, Differential Haplotype Structures, and Providing Etiologic Insight.	Parkinson's disease	4,639 Spanish ancestry cases, 2,949 Spanish ancestry controls	NA	4p16.3	TMEM175	rs34311866-C	0.16547	3E-7		0.2425	[0.15-0.34] unit increase	Illumina [9911207] (imputed)	N
592	chr4	951946	951947	rs34311866	30957308	Blauwendraat C	2019-04-07	Mov Disord	Parkinson's disease age at onset genome-wide association study: Defining heritability, genetic loci, and ?-synuclein mechanisms.	Parkinson's disease (age of onset)	17,996 cases	10,572 cases	4p16.3	GAK, TMEM175	rs34311866-C	0.2566	1E-8		0.613	[0.40-0.82] unit decrease	Illumina [6850647] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels x smoking (current vs non smokers) interaction (2df test)	5,022 African ancestry current smoker individuals, 808 Asian ancestry current smoker individuals, 13,303 European ancestry current smoker individuals, 764 Hispanic current smoker individuals, 18,489 African ancestry non smoker individuals, 3,841 Asian ancestry non smoker individuals, 63,740 European ancestry non smoker individuals, 5,941 Hispanic non smoker individuals	1,367 African ancestry current smoker individuals, 22,744 Asian ancestry current smoker individuals, 22,268 European ancestry current smoker individuals, 2,899 Hispanic current smoker individuals, 3,989 African ancestry non smoker individuals, 89,177 Asian ancestry non smoker individuals, 86,885 European ancestry non smoker individuals, 11,811 Hispanic non smoker individuals	4p16.3		rs34311866-C	0.17	3E-8	(EA)	0.01121	[0.00065-0.02177] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	Triglyceride levels	up to 23,508 African ancestry individuals, 4,649 Asian ancestry individuals, up to 77,047 European ancestry individuals, 6,705 Hispanic individuals	NA	4p16.3		rs34311866-?	NR	4E-6	(EA)	0.0177	[0.01-0.025] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (ever vs never smokers) interaction (2df test)	11,893 African ancestry ever smoker individuals, 4,025 Asian ancestry ever smoker individuals, 49,475 European ancestry ever smoker individuals, 2,544 Hispanic ever smoker individuals, 11,866 African ancestry never smoker individuals, 9,146 Asian ancestry never smoker individuals, 40,797 European ancestry never smoker individuals, 4,076 Hispanic never smoker individuals	2,827 African ancestry ever smoker individuals, 37,952 Asian ancestry ever smoker individuals, 82,808 European ancestry ever smoker individuals, 7,091 Hispanic ever smoker individuals, 2,785 African ancestry never smoker individuals, 43,565 Asian ancestry never smoker individuals, 64,252 European ancestry never smoker individuals, 10,431 Hispanic never smoker individuals	4p16.3		rs34311866-C	0.17	7E-8	(EA, trans-ethnic)			Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	4p16.3		rs34311866-C	0.17	2E-9		0.0014	[-0.00291-0.00571] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels x smoking (current vs non smokers) interaction (2df test)	5,120 African ancestry current smoker individuals, 2,394 Asian ancestry current smoker individuals, 15,129 European ancestry current smoker individuals, 747 Hispanic current smoker individuals, 18,641 African ancestry non smoker individuals, 10,777 Asian ancestry non smoker individuals, 75,138 European ancestry non smoker individuals, 5,873 Hispanic non smoker individuals	1,825 African ancestry current smoker individuals, 16,241 Asian ancestry current smoker individuals, 32,416 European ancestry current smoker individuals, 3,570 Hispanic current smoker individuals, 5,392 African ancestry non smoker individuals, 65,276 Asian ancestry non smoker individuals, 114,795 European ancestry non smoker individuals, 13,952 Hispanic non smoker individuals	4p16.3		rs34311866-?	NR	8E-6		0.004189	[-0.00436-0.01274] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	4p16.3		rs34311866-?	NR	5E-6		0.0078	[0.0045-0.0111] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	TMEM175	rs34311866-C	NR	3E-9				Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	TMEM175	rs34311866-C	NR	2E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	TMEM175	rs34311866-C	NR	1E-9				Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	TMEM175	rs34311866-C	NR	1E-11	(EA)			Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	TMEM175	rs34311866-C	NR	5E-10	(EA)	0.022	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	TMEM175	rs34311866-C	NR	1E-7		0.013	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	TMEM175	rs34311866-C	NR	8E-8				Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	TMEM175	rs34311866-C	NR	6E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	TMEM175	rs34311866-C	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	TMEM175	rs34311866-C	NR	1E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	TMEM175	rs34311866-C	NR	1E-6		0.006	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
592	chr4	951946	951947	rs34311866	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4p16.3	NR	rs34311866-T	0.8225	3E-15		0.0205	[0.015-0.026] unit decrease	NR [~ 27400000] (imputed)	N
592	chr4	951946	951947	rs34311866	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	4p16.3	TMEM175, DGKQ	rs34311866-C	0.184	1E-50		1.23	[1.20-1.27]	Illumina [11933700] (imputed)	N
592	chr4	951946	951947	rs34311866	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	4p16.3	TMEM175, GAK, DGKQ	rs34311866-C	0.191	1E-43		1.27	[1.24-1.30]	Illumina [7893274] (imputed)	N
592	chr4	953697	953698	rs4690326	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.3	IDUA	rs4690326-C	0.54875	1E-157	(IDUA, 3169_70_2)	0.6348621	[0.59-0.68] unit increase	Illumina [> 1000000] (imputed)	N
592	chr4	954246	954247	rs3733345	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IDUA	5,366 Icelandic ancestry individuals	NA	4p16.3		rs3733345-G	0.4473	2E-274		0.612179	[0.58-0.65] unit decrease	Illumina [7506463] (imputed)	N
592	chr4	954246	954247	rs3733345	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	4p16.3	DGKQ	rs3733345-?	NR	2E-11		1.1235955	[1.09-1.18]	Illumina [at least 5000000] (imputed)	N
592	chr4	954274	954275	rs3733346	24097067	Lessard CJ	2013-11-01	Nat Genet	Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome.	Sjogren's syndrome	395 European ancestry cases, 1,975 European ancestry controls	1,243 European ancestry cases, 4,779 European ancestry controls	4p16.3	DGKQ	rs3733346-C	0.49	8E-6		1.2	[1.22-1.18]	Illumina [648937]	N
592	chr4	954310	954311	rs3733349	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	Waist circumference	291,107 British ancestry individuals	NA	4p16.3	DGKQ	rs3733349-T	0.465298	2E-6		0.146737	[0.086-0.208] unit decrease	Affymetrix [9463307] (imputed)	N
592	chr4	954310	954311	rs3733349	31928498	Lind L	2020-01-13	Metab Syndr Relat Disord	Genetic Determinants of Clustering of Cardiometabolic Risk Factors in U.K. Biobank.	High density lipoprotein cholesterol levels	291,107 British ancestry individuals	NA	4p16.3	DGKQ	rs3733349-T	0.465298	7E-13		0.00653048	[0.0048-0.0083] unit increase	Affymetrix [9463307] (imputed)	N
592	chr4	956046	956047	rs6599390	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Idiopathic inflammatory myopathy	2,556 European ancestry cases, 15,651 European ancestry controls		4p16.3	DGKQ	rs6599390-?	0.66	6E-7		1.1764705		Illumina [90536]	N
592	chr4	960712	960713	rs4690196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	DGKQ	rs4690196-A	NR	4E-13		0.0204745	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	960712	960713	rs4690196	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	DGKQ	rs4690196-A	NR	8E-13		0.0202394	[0.015-0.026] unit decrease	Affymetrix [319769] (imputed)	N
592	chr4	961918	961919	rs62294486	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4p16.3		rs62294486-C	0.605499	4E-8		0.021439	[0.014-0.029] unit decrease	NR [11722792] (imputed)	N
592	chr4	963396	963397	rs11725653	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p16.3	NR	rs11725653-C	0.893645	3E-17		0.010581	[0.0079-0.0132] unit increase	Affymetrix [16582909] (imputed)	N
592	chr4	963396	963397	rs11725653	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p16.3	NR	rs11725653-C	0.893645	3E-12		0.0101767	[0.0072-0.0131] unit increase	Affymetrix [16582965] (imputed)	N
592	chr4	964358	964359	rs11248060	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4p16.3	DGKQ	rs11248060-?	NR	3E-9		1.26	[NR]	Illumina [2500000] (imputed)	N
592	chr4	964358	964359	rs11248060	22438815	Lill CM	2012-03-15	PLoS Genet	Comprehensive research synopsis and systematic meta-analyses in Parkinson's disease genetics: The PDGene database.	Parkinson's disease	2,197 cases, 2,061 controls	Up to 98,080 European and Asian ancestry individuals	4p16.3	GAK, DGKQ	rs11248060-?	0.12	3E-12	(EA)	1.21	[1.15-1.27]	Illumina, Perlegen [7123920] (imputed)	N
592	chr4	964358	964359	rs11248060	20070850	Edwards TL	2010-01-13	Ann Hum Genet	Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease.	Parkinson's disease	1,752 European ancestry cases, 1,745 European ancestry controls	NA	4p16.3	DGKQ	rs11248060-?	NR	2E-6				Illumina [495715] (imputed)	N
592	chr4	965719	965720	rs13101828	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4p16.3	NR	rs13101828-G	NR	1E-9		0.0152	[0.01-0.02] unit increase	Affymetrix [9000000] (imputed)	N
592	chr4	965719	965720	rs13101828	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4p16.3	DGKQ	rs13101828-A	0.61	8E-10		0.91	[0.88-0.94]	Illumina [11270530] (imputed)	N
592	chr4	965719	965720	rs13101828	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p16.3	DGKQ	rs13101828-A	0.546375	2E-9		0.0121094	[0.0082-0.016] unit increase	Affymetrix [NR] (imputed)	N
592	chr4	965719	965720	rs13101828	30573655	Acosta-Herrera M	2018-12-20	Ann Rheum Dis	Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases.	Systemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)	up to 4,595 European ancestry rheumatoid arthritis cases, up to 3,154 European ancestry systemic lupus erythematosus cases, up to 2,281 European ancestry systemic sclerosis cases, up to 1,674 European ancestry idiopathic inflammatory myopathy cases, 19,704 European ancestry controls	NA	4p16.3	DGKQ	rs13101828-G	NR	1E-8		1.11	[1.07-1.16]	Illumina [6450125] (imputed)	N
592	chr4	965719	965720	rs13101828	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4p16.3	NR	rs13101828-A	0.5499	9E-19		0.0175	[0.014-0.021] unit increase	NR [~ 27400000] (imputed)	N
592	chr4	965719	965720	rs13101828	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	NR	rs13101828-G	0.458	1E-85	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.46	[0.42-0.5] unit increase	Affymetrix [10572788] (imputed)	N
592	chr4	965778	965779	rs11724804	31672989	Lopez-Isac E	2019-10-31	Nat Commun	GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways.	Systemic sclerosis	9,095 European ancestry cases, 17,584 European ancestry controls	NA	4p16.3	DGKQ	rs11724804-A	0.44	5E-11		1.17		Illumina [4723365]	N
592	chr4	965778	965779	rs11724804	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs11724804-?	NR	4E-19				Affymetrix [~ 8270000] (imputed)	N
592	chr4	965778	965779	rs11724804	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p16.3		rs11724804-?	NR	3E-18				NR [~ 8900000] (imputed)	N
592	chr4	965778	965779	rs11724804	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4p16.3	NR	rs11724804-G	0.55	2E-19		0.017	[0.013-0.021] unit increase	Affymetrix [2446094] (imputed)	N
592	chr4	965778	965779	rs11724804	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4p16.3	NR	rs11724804-G	0.55	5E-8				Affymetrix [2446094] (imputed)	N
592	chr4	965778	965779	rs11724804	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4p16.3	NA	rs11724804-A	0.4436	5E-20		0.0165	[0.013-0.02] unit decrease	NR [~ 27400000] (imputed)	N
592	chr4	965778	965779	rs11724804	29293537	Gorlova OY	2018-01-02	PLoS One	Gene-level association analysis of systemic sclerosis: A comparison of African-Americans and White populations.	Limited cutaneous systemic scleroderma	1,087 European ancestry cases, 3,466 European ancestry controls, 82 African American cases, 260 African American controls	NA	4p16.3	DGKQ, IDUA, TMEM175, SLC26A1	rs11724804-?	NR	2E-6	(EA)			Illumina [~ 2500000] (imputed)	N
592	chr4	965778	965779	rs11724804	26394269	Cordell HJ	2015-09-22	Nat Commun	International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways.	Primary biliary cholangitis	2,764 European ancestry cases, 10,475 European ancestry controls	3,716 European ancestry cases,  4,261 European ancestry controls	4p16.3	GAK, TMEM175, DGKQ, SLC26A1a, IDUA, FGFRL1	rs11724804-A	NR	9E-12		1.22	[1.12-1.33]	Illumina [1143634] (imputed)	N
592	chr4	966006	966007	rs547595393	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs547595393-?	NR	1E-20		0.170347	[0.13-0.21] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	967330	967331	rs113881148	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	4p16.3	TMEM175	rs113881148-A	0.626	6E-9		1.082		Illumina [715631] (imputed)	N
592	chr4	967330	967331	rs113881148	34127860	Robertson CC	2021-06-14	Nat Genet	Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes.	Type 1 diabetes	20,065 European ancestry cases, 33,065 European ancestry controls, 1,045 other-admixed ancestry cases, 1,103 other-admixed ancestry controls, 1,043 African ancestry cases, 3,206 African ancestry controls	NA	4p16.3	TMEM175	rs113881148-A	0.626	6E-9		1.082		Illumina [715631] (imputed)	N
592	chr4	967444	967445	rs13137144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4p16.3		rs13137144-G	0.538743	1E-8		0.0223088	[0.015-0.03] unit increase	NR [11722792] (imputed)	N
592	chr4	967444	967445	rs13137144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13137144-G	0.538738	7E-9		0.0228139	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
592	chr4	967444	967445	rs13137144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4p16.3		rs13137144-G	0.538742	5E-9		0.0237557	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
592	chr4	967444	967445	rs13137144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13137144-G	0.538738	3E-9		0.0232284	[0.016-0.031] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	3E-9		0.0222691	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	6E-9		0.0213176	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	3E-9		0.022281	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	2E-8		0.0207286	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	3E-8		0.02062	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	1E-8		0.0221676	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	2E-9		0.0219546	[0.015-0.029] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	3E-8		0.0207855	[0.013-0.028] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	6E-9		0.0213023	[0.014-0.028] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	9E-10		0.022923	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	2E-9		0.0223087	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	1E-9		0.0229633	[0.016-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	1E-9		0.0222897	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs12510382-A	0.540084	1E-9		0.0226048	[0.015-0.03] unit decrease	NR [11722792] (imputed)	N
592	chr4	970111	970112	rs12510382	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4p16.3		rs12510382-G	NR	2E-14		0.0176	[0.013-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
592	chr4	970111	970112	rs12510382	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p16.3	DGKQ	rs12510382-A	0.539781	7E-18		0.0165672	[0.013-0.02] unit decrease	Affymetrix [NR] (imputed)	N
592	chr4	970111	970112	rs12510382	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4p16.3	DGKQ	rs12510382-A	0.539884	2E-10		0.0126427	[0.0088-0.0165] unit decrease	Affymetrix [NR] (imputed)	N
592	chr4	970723	970724	rs4690229	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	4p16.3	DGKQ	rs4690229-?	NR	2E-8		1.13	[1.09-1.19]	Illumina [at least 5000000] (imputed)	N
592	chr4	976597	976598	rs17783233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.3	DGKQ, SLC26A1	rs17783233-C	NR	2E-9		0.0270363	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	976597	976598	rs17783233	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.3	DGKQ, SLC26A1	rs17783233-C	NR	3E-9		0.0267192	[0.018-0.036] unit increase	Affymetrix [319769] (imputed)	N
592	chr4	977269	977270	rs4690219	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4p16.3	NR	rs4690219-?	NR	1E-20	(IDUA)			Illumina [~ 4000000] (imputed)	N
592	chr4	980463	980464	rs4690220	26362759	Rothwell S	2015-09-11	Ann Rheum Dis	Dense genotyping of immune-related loci in idiopathic inflammatory myopathies confirms HLA alleles as the strongest genetic risk factor and suggests different genetic background for major clinical subgroups.	Polymyositis	931 European ancestry cases, 15,651 European ancestry controls		4p16.3	SLC26A1, IDUA	rs4690220-G	0.45	8E-6		1.25	[1.13-1.37]	Illumina [90536]	N
592	chr4	980895	980896	rs11248061	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4p16.3	NR	rs11248061-A	0.4336	2E-10	(Pericalcarine)	6.7309155	[4.65-8.81] unit increase	Affymetrix, Illumina [NR]	N
592	chr4	980931	980932	rs10902762	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.3	SLC26A1, IDUA	rs10902762-A	NR	2E-8		0.0163411	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
592	chr4	981683	981684	rs148775298	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	NR	rs148775298-G	0.008	4E-17	(Alpha-L-iduronidase, IDUA.3169.70.2)	1.24	[0.95-1.53] unit decrease	Affymetrix [10572788] (imputed)	N
592	chr4	985726	985727	rs3822020	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	IDUA	rs3822020-G	0.637	7E-148	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.61	[0.57-0.65] unit increase	Affymetrix [10572788] (imputed)	N
592	chr4	987342	987343	rs3822030	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p16.3	IDUA	rs3822030-T	0.570953	7E-10		0.014093647	[0.0096-0.0186] unit increase	Affymetrix [93095623] (imputed)	N
592	chr4	992235	992236	rs4690222	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4p16.3	NR	rs4690222-A	0.556739	2E-10		0.0442996	[0.031-0.058] unit increase	Affymetrix [17914406] (imputed)	N
592	chr4	994010	994011	rs56079856	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	NR	rs56079856-T	0.156	6E-30	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.38	[0.32-0.44] unit increase	Affymetrix [10572788] (imputed)	N
592	chr4	994413	994414	rs3755955	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	4p16.3	NR	rs3755955-?		4E-9		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [2374420] (imputed)	N
592	chr4	994413	994414	rs3755955	22504420	Estrada K	2012-04-15	Nat Genet	Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.	Lumbar spine bone mineral density	Up to 32,961 European and East Asian ancestry individuals	Up to 50,933 European and East Asian ancestry individuals	4p16.3	IDUA	rs3755955-A	0.16	5E-15		0.06	[NR] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
592	chr4	996164	996165	rs6831280	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	4p16.3	NR	rs6831280-A	0.1572	8E-19	(European)	0.0804	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
592	chr4	996501	996501	rs150523349	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs150523349-?	NR	2E-152		0.0742979	[0.068-0.08] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	996997	996998	rs113289555	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	NR	rs113289555-T	0.232	3E-44	(Alpha-L-iduronidase, IDUA.3169.70.2)	0.4	[0.34-0.46] unit increase	Affymetrix [10572788] (imputed)	N
592	chr4	997487	997488	rs2305489	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	IDUA	rs2305489-G	0.949207	2E-13		0.0326323	[0.024-0.041] unit decrease	NR [13737936] (imputed)	N
592	chr4	999444	999445	rs6827815	24249740	Zhang L	2013-11-17	Hum Mol Genet	Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.	Bone mineral density	5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females	7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males	4p16.3	FGFRL1	rs6827815-?	NR	5E-12	(FNK)			Affymetrix, Illumina [5842825] (imputed)	N
592	chr4	1000137	1000138	rs6829296	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs6829296-?	NR	2E-10		0.0130438	[0.0088-0.0173] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	1001741	1001742	rs10018140	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p16.3		rs10018140-T	0.28	8E-10		6.14	z score increase	Affymetrix [9061022] (imputed)	N
592	chr4	1001741	1001742	rs10018140	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p16.3	NR	rs10018140-T	0.2859	5E-11				NR [9056863] (imputed)	N
592	chr4	1002447	1002448	rs6812278	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.3		rs6812278-C	0.28	2E-14		7.67	z score increase	Affymetrix [9061022] (imputed)	N
592	chr4	1002447	1002448	rs6812278	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p16.3		rs6812278-C	0.28	8E-13		7.16	z score increase	Affymetrix [9061022] (imputed)	N
592	chr4	1002447	1002448	rs6812278	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4p16.3	NR	rs6812278-C	0.298	1E-16	(Pericalcarine)	9.55114	[7.29-11.81] unit increase	Affymetrix, Illumina [NR]	N
592	chr4	1002447	1002448	rs6812278	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4p16.3	NR	rs6812278-C	0.2977	1E-10	(Lingual)	12.578581	[8.74-16.42] unit increase	Affymetrix, Illumina [NR]	N
592	chr4	1003021	1003022	rs4505759	33097703	Surakka I	2020-10-23	Nat Commun	MEPE loss-of-function variant associates with decreased bone mineral density and increased fracture risk.	Ultradistal forearm bone mineral density	21,907 European ancestry individuals	NA	4p16.3	NR	rs4505759-T	0.696003586053848	3E-9		0.06850401	[0.046-0.091] SD units decrease	Illumina [11603265] (imputed)	N
592	chr4	1003021	1003022	rs4505759	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	FGFRL1	rs4505759-C	0.692291	2E-64		0.0400239	[0.035-0.045] unit decrease	NR [13737936] (imputed)	N
592	chr4	1003021	1003022	rs4505759	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.3		rs4505759-?	NR	4E-179				NR [~ 8900000] (imputed)	N
592	chr4	1003021	1003022	rs4505759	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs4505759-?	NR	1E-179		0.0618336	[0.057-0.066] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr4	1003021	1003022	rs4505759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs4505759-C	0.693418	3E-32	(women)	0.0567976	[0.047-0.067] unit decrease	NR [17166351] (imputed)	N
592	chr4	1003021	1003022	rs4505759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs4505759-C	0.693003	6E-52		0.0526137	[0.045-0.06] unit decrease	NR [17166351] (imputed)	N
592	chr4	1003021	1003022	rs4505759	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs4505759-C	0.692528	1E-19	(men)	0.0491285	[0.038-0.06] unit decrease	NR [17166351] (imputed)	N
592	chr4	1004863	1004864	rs78520297	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	FGFRL1	rs78520297-T	0.855477	7E-99		0.0581517	[0.053-0.064] unit increase	NR [13737936] (imputed)	N
592	chr4	1004863	1004864	rs78520297	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	4p16.3	FGFRL1	rs78520297-T	0.8507	3E-24		0.0428	[0.035-0.051] unit decrease	NR [13977204] (imputed)	N
592	chr4	1006076	1006076	rs35719905	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.3	FGFRL1	rs35719905-T	0.5425	9E-27		0.0205	[0.017-0.024] unit increase	Affymetrix [18391927] (imputed)	N
592	chr4	1006912	1006913	rs143614383	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs143614383-?	NR	3E-23		0.153246	[0.12-0.18] unit decrease	Affymetrix [20259828] (imputed)	N
592	chr4	1006986	1006987	rs76051363	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density	56,284 European ancestry individuals, up to 1,333 African American individuals, up to 9,328 admixed individuals	NA	4p16.3	NR	rs76051363-T	0.1491	1E-20		0.0794	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
592	chr4	1007234	1007235	rs79574529	32963334	Wei XT	2020-09-22	Eur J Hum Genet	Pleiotropic genomic variants at 17q21.31 associated with bone mineral density and body fat mass: a bivariate genome-wide association analysis.	Bone mineral density (hip)	10,070 European ancestry individuals, 1,623 Han Chinese ancestry individuals, 843 African American individuals, 445 Hispanic individuals	NA	4p16.3	NR	rs79574529-?		1E-8		0.1	[0.061-0.139] unit decrease	Affymetrix, Illumina [2374420] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4p16.3	FGFRL1	rs77822621-T	0.0420970000000001	4E-12		0.038957357	[0.028-0.05] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte count	408,112 British individuals	NA	4p16.3	FGFRL1	rs77822621-T	0.042088	1E-11		0.03813544	[0.027-0.049] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4p16.3	FGFRL1	rs77822621-T	0.042116	1E-10		0.035908066	[0.025-0.047] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4p16.3	FGFRL1	rs77822621-T	0.042109	2E-10		0.035349764	[0.024-0.046] unit decrease	Affymetrix [93095623] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4p16.3	NR	rs77822621-T	0.04236099999999998	3E-8		0.0174868	[0.011-0.024] unit increase	Affymetrix [16578495] (imputed)	N
592	chr4	1008211	1008212	rs77822621	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	230,454 European ancestry women	NA	4p16.3	NR	rs77822621-T	0.04222099999999995	9E-14		0.0479737	[0.034-0.062] unit increase	Affymetrix [16580851] (imputed)	N
592	chr4	1008211	1008212	rs77822621	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	High light scatter reticulocyte percentage of red cells	170,763 European ancestry individuals	NA	4p16.3	FGFRL1	rs77822621-T	0.0424	9E-10		0.05407923	[0.037-0.071] unit decrease	Affymetrix [~ 2500000] (imputed)	N
592	chr4	1008385	1008386	rs56396408	29304378	Medina-Gomez C	2018-01-04	Am J Hum Genet	Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects.	Total body bone mineral density (age 45-60)	18,805 European individuals	NA	4p16.3	NR	rs56396408-T	0.1529	1E-13		0.1198	unit decrease	Affymetrix, Illumina [~ 23700000] (imputed)	N
592	chr4	1009899	1009900	rs34587452	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs34587452-?	NR	1E-34				NR [~ 8900000] (imputed)	N
592	chr4	1010076	1010077	rs35654957	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4p16.3		rs35654957-C	NR	8E-11		0.0143	[0.01-0.0186] unit increase	Affymetrix, Illumina [20533886] (imputed)	N
592	chr4	1010076	1010077	rs35654957	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4p16.3	FGFRL1	rs35654957-C	0.37	2E-8		5.64	z-score increase	Affymetrix [4311822] (imputed)	N
592	chr4	1010076	1010077	rs35654957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4p16.3	NR	rs35654957-T	0.629833	5E-13		0.00799753	[0.0057-0.0103] unit increase	Affymetrix [16582621] (imputed)	N
592	chr4	1010076	1010077	rs35654957	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4p16.3	NR	rs35654957-T	0.629833	3E-12		0.00841414	[0.0059-0.0109] unit increase	Affymetrix [16582614] (imputed)	N
592	chr4	1010076	1010077	rs35654957	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.3	PCGF3	rs35654957-C	0.367	4E-7		1.03	[1.02-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
592	chr4	1010076	1010077	rs35654957	29499414	Pei YF	2018-02-27	Bone	Joint study of two genome-wide association meta-analyses identified 20p12.1 and 20q13.33 for bone mineral density.	Femoral neck bone mineral density	up to 4,692 European ancestry individuals, up to 1,539 Han Chinese ancestry individuals, up to 849 African American individuals, up to 446 Hispanic individuals, 2,882 European ancestry whole-genome sequenced individuals, 3,549 European ancestry whole-exome sequenced individuals, 26,534 European ancestry non-array genotype imputed individuals	NA	4p16.3	FGFRL1	rs35654957-T	0.632266	4E-10		0.0478	[0.033-0.063] unit increase	Affymetrix, Illumina [7998108] (imputed)	N
592	chr4	1010250	1010251	rs35220088	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein IDUA	5,366 Icelandic ancestry individuals	NA	4p16.3		rs35220088-C	0.3943	2E-92		0.39027	[0.35-0.43] unit increase	Illumina [7506463] (imputed)	N
592	chr4	1012299	1012300	rs111632154	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	FGFRL1	rs111632154-T	0.954374	4E-73		0.0831912	[0.074-0.092] unit increase	NR [13737936] (imputed)	N
592	chr4	1012299	1012300	rs111632154	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Fractures	53,184 British ancestry cases, 373,611 British ancestry controls	367,900 European ancestry cases, 363,919 European ancestry controls	4p16.3	FGFRL1	rs111632154-T	0.9572	2E-14		0.0576	[0.043-0.072] unit decrease	NR [13977204] (imputed)	N
592	chr4	1012299	1012300	rs111632154	30158200	Trajanoska K	2018-08-29	BMJ	Assessment of the genetic and clinical determinants of fracture risk: genome wide association and mendelian randomisation study.	Fractures	37,857 European or East Asian cases, 227,116 European or East Asian controls	147,200 European ancestry cases, 150,085 European ancestry controls	4p16.3	FGFRL1	rs111632154-C	0.05	2E-8		1.09	[1.04-1.09]	Affymetrix, Illumina [2539801] (imputed)	N
592	chr4	1012299	1012300	rs111632154	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs111632154-?	NR	1E-74		0.0888448	[0.079-0.099] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	1013381	1013382	rs74921869	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p16.3	NR	rs74921869-A	0.182	1E-8				NR [9056863] (imputed)	N
592	chr4	1013381	1013382	rs74921869	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 5)	4,680 European ancestry individuals	3,566 European ancestry individuals	4p16.3		rs74921869-A	0.18614039	4E-11				Illumina [7417619] (imputed)	N
592	chr4	1013381	1013382	rs74921869	31396565	van der Lee SJ	2019-08-02	Commun Biol	A genome-wide association study identifies genetic loci associated with specific lobar brain volumes.	Occipital lobe volume	15,269 European ancestry individuals, 405 African American individuals, 211 Chinese ancestry individuals, 131 Malay ancestry individuals	NA	4p16.3	FGFRL1	rs74921869-A	0.203	6E-9		0.818	[0.54-1.09] cm3 decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
592	chr4	1016979	1016980	rs559902765	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs559902765-?	NR	6E-19		0.181908	[0.14-0.22] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	1034996	1034997	rs112069922	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs112069922-?	NR	2E-71		0.0860227	[0.076-0.096] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	1034996	1034997	rs112069922	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs112069922-C	0.950899	2E-13	(women)	0.0732202	[0.052-0.094] unit increase	NR [17166351] (imputed)	N
592	chr4	1034996	1034997	rs112069922	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs112069922-C	0.950738	8E-24		0.0757401	[0.06-0.091] unit increase	NR [17166351] (imputed)	N
592	chr4	1034996	1034997	rs112069922	28869591	Kemp JP	2017-09-04	Nat Genet	Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.	Heel bone mineral density	76,067 European ancestry women, 66,420 European ancestry men	NA	4p16.3	FGFRL1	rs112069922-C	0.950553	2E-12	(men)	0.0820144	[0.059-0.105] unit increase	NR [17166351] (imputed)	N
592	chr4	1036299	1036300	rs112688410	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs112688410-?	NR	1E-29		0.0320319	[0.026-0.038] unit increase	Affymetrix [20259828] (imputed)	N
592	chr4	1039214	1039215	rs62296075	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.3	FGFRL1	rs62296075-G	0.023	4E-6	(Sedentary activity )	0.03	[NR] min/d increase	Illumina [899892]	N
592	chr4	1045970	1045971	rs11726436	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	RNF212	rs11726436-G	0.462053	2E-24		0.0203553	[0.016-0.024] unit increase	NR [13737936] (imputed)	N
593	chr4	1052124	1052125	rs11724371	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs11724371-?	NR	5E-21		0.0235768	[0.019-0.029] unit increase	Affymetrix [20259828] (imputed)	N
593	chr4	1078186	1078187	rs1670533	18239089	Kong A	2008-02-02	Science	Sequence variants in the RNF212 gene associate with genome-wide recombination rate.	Recombination rate (females)	1,702 female individuals	1,663 female individuals	4p16.3	RNF212, SPON2	rs1670533-C	0.23 (men and women combined)	2E-12		88.2	[63.7-112.7] cM increase	Illumina [309241]	N
593	chr4	1095280	1095281	rs3796619	18239089	Kong A	2008-02-02	Science	Sequence variants in the RNF212 gene associate with genome-wide recombination rate.	Recombination rate (males)	1,887 male individuals	1,248 male individuals	4p16.3	RNF212, SPON2	rs3796619-T	0.33 (men and women combined)	3E-24		70.7	[57.1-84.3] cM decrease	Illumina [309241]	N
593	chr4	1112397	1112397	rs374783381	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs374783381-?	NR	2E-15		0.0271677	[0.02-0.034] unit increase	Affymetrix [20259828] (imputed)	N
593	chr4	1118343	1118344	rs78149767	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.3		rs78149767-?	NR	2E-33				NR [~ 8900000] (imputed)	N
593	chr4	1141697	1141698	rs28510442	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein SPON2	5,365 Icelandic ancestry individuals	NA	4p16.3		rs28510442-A	0.1199	7E-21		0.260437	[0.21-0.31] unit increase	Illumina [7506463] (imputed)	N
593	chr4	1144701	1144702	rs4974633	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Immature fraction of reticulocytes	408,112 British individuals	NA	4p16.3	TMED11P	rs4974633-A	0.344743	2E-18		0.020654289	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
593	chr4	1156142	1156143	rs35936358	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p16.3		rs35936358-?	NR	1E-9				NR [~ 8900000] (imputed)	N
593	chr4	1169812	1169813	rs878323	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.3	SPON2	rs878323-T	0.68703125	2E-16	(SPON2, 8099_42_3)	0.21271415	[0.16-0.26] unit decrease	Illumina [> 1000000] (imputed)	N
594	chr4	1192983	1192984	rs79025626	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p16.3		rs79025626-G	NR	5E-6		4.5832624	z score increase	Affymetrix, Illumina [NR] (imputed)	N
594	chr4	1236082	1236083	rs3755934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4p16.3		rs3755934-T	0.314679837	5E-21		0.10029123	[0.079-0.121] unit decrease	Illumina [13134967] (imputed)	N
594	chr4	1236082	1236083	rs3755934	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	4p16.3		rs3755934-T	NR	6E-10		0.0201	[0.014-0.026] unit decrease	Affymetrix, Illumina [20535873] (imputed)	N
594	chr4	1236082	1236083	rs3755934	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs3755934-C	0.6901	3E-25		0.1044	[0.085-0.124] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
594	chr4	1236110	1236111	rs1250101	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p16.3		rs1250101-G	0.616	2E-8		0.007	[0.005-0.009] unit increase	NR [NR] (imputed)	N
594	chr4	1236501	1236502	rs73069940	26818947	Imamura M	2016-01-28	Nat Commun	Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes.	Type 2 diabetes	15,463 Japanese ancestry cases, 26,183 Japanese ancestry controls	20,490 East Asian ancestry cases, 22,922 East Asian ancestry controls, 38,947 European ancestry cases, 121,903 European ancestry controls, 10,587 South Asian ancestry cases, 14,378 South Asian ancestry controls, 3,848 Mexican/Latino cases, 4,366 Mexican/Latino controls	4p16.3	MAEA	rs73069940-C	NR	1E-12	(Japanese)	1.12862	[1.0917-1.1668]	Illumina [7521072] (imputed)	N
594	chr4	1238969	1238970	rs75150069	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs75150069-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
594	chr4	1240298	1240299	rs730831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4p16.3		rs730831-G	0.319589547	5E-25		0.102937415	[0.083-0.122] unit decrease	Illumina [13429769] (imputed)	N
594	chr4	1240298	1240299	rs730831	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4p16.3		rs730831-G	NR	8E-24		0.1016	[0.082-0.121] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
594	chr4	1240298	1240299	rs730831	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs730831-G	0.1945	5E-34		0.0878	[0.074-0.102] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
594	chr4	1240298	1240299	rs730831	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4p16.3		rs730831-G	0.311973487	6E-29		0.90297467	[0.88694636-0.919292571]	Illumina [8919992] (imputed)	N
594	chr4	1244217	1244218	rs79407053	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4p16.3	MAEA	rs79407053-G	0.69	1E-24		1.11	1.09-1.13	Illumina [12557761] (imputed)	N
594	chr4	1246037	1246038	rs72501962	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4p16.3		rs72501962-T	NR	2E-22		0.0864	[0.069-0.104] unit decrease	Affymetrix, Illumina [25845091] (imputed)	N
594	chr4	1246037	1246038	rs72501962	31118516	Flannick J	2019-05-22	Nature	Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls.	Type 2 diabetes	2,277 African American cases, 3,098 East Asian ancestry cases, 3,704 European ancestry cases, 6,215 Hispanic/Latino cases, 2,939 South Asian ancestry cases, 2,283 African American controls, 2,921 East Asian ancestry controls, 3,514 European ancestry controls, 5,939 Hispanic/Latino controls, 3,022 South Asian ancestry controls	NA	4p16.3	CTBP1	rs72501962-A	0.28	8E-12		1.15	NR	Affymetrix, Illumina [up to 35256845] (imputed)	N
594	chr4	1254534	1254535	rs7656416	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4p16.3	CTBP1, AS1	rs7656416-C	0.683	9E-42		1.11	[1.09-1.12]	Affymetrix, Illumina [11800000] (imputed)	N
594	chr4	1254534	1254535	rs7656416	22456796	Imamura M	2012-03-28	Hum Mol Genet	A single-nucleotide polymorphism in ANK1 is associated with susceptibility to type 2 diabetes in Japanese populations.	Type 2 diabetes	4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls	7,605 Japanese ancestry cases, 3,534 Japanese ancestry controls	4p16.3	MGC21675	rs7656416-?	0.675	1E-8		1.15	[1.10-1.21]	NR [2229890] (imputed)	N
594	chr4	1254929	1254930	rs1250129	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	4p16.3	MAEA	rs1250129-A	0.1149	1E-10		0.2069	[0.14-0.27] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
594	chr4	1267202	1267203	rs72501964	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p16.3	NR	rs72501964-G	0.9606	2E-10		0.0831	[0.057-0.109] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
594	chr4	1275783	1275784	rs1732124	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4p16.3		rs1732124-?	NR	4E-7		0.18	[0.11-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
594	chr4	1284887	1284888	rs2141654	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4p16.3	NR	rs2141654-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
594	chr4	1285961	1285962	rs11727297	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4p16.3	NR	rs11727297-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
594	chr4	1291057	1291058	rs11931251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4p16.3		rs11931251-T	NR	9E-9		0.0211	[0.014-0.028] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
594	chr4	1291057	1291058	rs11931251	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	128,028 East Asian ancestry individuals	NA	4p16.3		rs11931251-T	0.29715	2E-8		0.0230067	[0.015-0.031] unit increase	Illumina [13476299] (imputed)	N
594	chr4	1291112	1291113	rs13108904	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.3	MAEA, KIAA1530	rs13108904-A	0.357	2E-6	(HRmax )	0.04	[NR] bpm increase	Illumina [899892]	N
594	chr4	1297719	1297720	rs190355720	34059833	Chen J	2021-05-31	Nat Genet	The trans-ancestral genomic architecture of glycemic traits.	Fasting glucose	200,622 European ancestry individuals	NA	4p16.3	MAEA	rs190355720-T	0.0324	6E-7		0.035	[0.02-0.05] unit decrease	Affymetrix, Illumina [34064007] (imputed)	N
594	chr4	1302351	1302352	rs74348612	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	4p16.3	NR	rs74348612-T	NR	4E-6		1.4369	NR	Illumina [at least 560000] (imputed)	N
594	chr4	1309900	1309901	rs6815464	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4p16.3	MAEA	rs6815464-G	0.0258	1E-8		0.083	[0.054-0.112] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
594	chr4	1309900	1309901	rs6815464	23945395	Hara K	2013-08-14	Hum Mol Genet	Genome-wide association study identifies three novel loci for type 2 diabetes.	Type 2 diabetes	5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls	24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls	4p16.3	MAEA	rs6815464-G	0.64	2E-7		1.1236	[1.08-1.18]	Illumina [6209637] (imputed)	N
594	chr4	1309900	1309901	rs6815464	22158537	Cho YS	2011-12-11	Nat Genet	Meta-analysis of genome-wide association studies identifies eight new loci for type 2 diabetes in east Asians.	Type 2 diabetes	5,999 East Asian ancestry cases, 9,001 East Asian ancestry controls, 794 Malay ancestry cases, 1,240 Malay ancestry controls, 159 Filipino ancestry cases, 1,624 Filipino ancestry controls	18,127 East Asian ancestry cases, 17,746 East Asian ancestry controls	4p16.3	MAEA	rs6815464-C	0.58	2E-20		1.13	[1.10-1.16]	Affymetrix, Illumina [2626356] (imputed)	N
595	chr4	1310926	1310927	rs13141139	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	4p16.3	NR	rs13141139-?		2E-6		52.0532	[30.69-73.41] unit decrease	NR [NR] (imputed)	N
595	chr4	1312919	1312920	rs28660352	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4p16.3	NR	rs28660352-?		7E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
595	chr4	1320541	1320542	rs60722337	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4p16.3		rs60722337-G	NR	3E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
595	chr4	1332174	1332175	rs13147602	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Tenofovir clearance in HIV infection	243 European ancestry cases, 149 African American cases, 100 Hispanic American cases, 9 unknown ancestry cases	NA	4p16.3	NR	rs13147602-?		9E-6	(Hispanic)			Illumina [~ 5190000] (imputed)	N
595	chr4	1341552	1341553	rs111391498	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.3	UVSSA	rs111391498-A	0.9523	4E-14		0.0334	[0.025-0.042] unit increase	Affymetrix [18391927] (imputed)	N
595	chr4	1341552	1341553	rs111391498	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Sunburns	approximately 344,000 European ancestry individuals	NA	4p16.3		rs111391498-?	NR	8E-24				NR [~ 8900000] (imputed)	N
595	chr4	1349601	1349602	rs3796618	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs3796618-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
595	chr4	1349601	1349602	rs3796618	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4p16.3	UVSSA	rs3796618-T	0.4707	1E-8		1.0231643		Affymetrix [11880941] (imputed)	N
595	chr4	1365126	1365127	rs13118159	20834067	Yashin AI	2010-09-01	Aging (Albany NY)	Joint influence of small-effect genetic variants on human longevity.	Longevity	1,173 individuals	NA	4p16.3	RP11-1244E8.1	rs13118159-?	NR	1E-6	(less than or equal to)			NR [~ 550000]	N
595	chr4	1380847	1380848	rs4974559	26969751	Parmar PG	2016-03-11	Circ Cardiovasc Genet	International Genome-Wide Association Study Consortium Identifies Novel Loci Associated With Blood Pressure in Children and Adolescents.	Systolic blood pressure	5,008 European ancestry prepubescent females, 5,082 European ancestry prepubescent males, 4,238 European ancestry pubescent females, 4,185 European ancestry pubescent males, 2,680 European ancestry post-pubescent females, 2,496 European ancestry post-pubescent males	NA	4p16.3	KIAA1530	rs4974559-?	NR	7E-6	(Male, Puberty)	0.117	[0.066-0.168] unit decrease	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
595	chr4	1392235	1392236	rs368222845	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.3	CRIPAK	rs368222845-G	0.999098	1E-12		0.147828	[0.11-0.19] unit increase	NR [13737936] (imputed)	N
595	chr4	1392235	1392236	rs368222845	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p16.3		rs368222845-?	NR	3E-16		0.182344	[0.14-0.23] unit increase	Affymetrix [20259828] (imputed)	N
595	chr4	1392788	1392789	rs184112086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p16.3		rs184112086-?	NR	2E-8				NR [~ 8900000] (imputed)	N
595	chr4	1410751	1410752	rs11727468	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs11727468-?	NR	3E-8				NR [~ 8900000] (imputed)	N
595	chr4	1415034	1415035	rs4246688	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.3		rs4246688-?	NR	4E-34				NR [~ 8900000] (imputed)	N
596	chr4	1554747	1554748	rs6838024	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.3	SLBP	rs6838024-?	NR	2E-6	(SM 16:1)	0.33905965	[0.2-0.48] unit increase	Affymetrix [at least 2500000] (imputed)	N
597	chr4	1603969	1603970	rs56039511	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	FAM53A	rs56039511-C	NR	8E-9		0.0164591	[0.011-0.022] unit increase	Affymetrix [321016] (imputed)	N
597	chr4	1611965	1611966	rs145714996	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Artificially sweetened beverage consumption	85,852 European ancestry individuals	39,924 European ancestry individuals	4p16.3	FAM53A	rs145714996-T	0.0142	4E-6		0.0283	[0.016-0.04] unit increase	Affymetrix [~ 7740000] (imputed)	N
597	chr4	1624124	1624125	rs4865444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p16.3		rs4865444-?	NR	6E-8				NR [~ 8900000] (imputed)	N
597	chr4	1634505	1634506	rs11942233	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	4p16.3	FAM53A	rs11942233-C		9E-7		1.45	[1.25-1.69]	Illumina [569200]	N
597	chr4	1671771	1671772	rs1867924	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	FAM53A	rs1867924-A	NR	5E-10		0.0175278	[0.012-0.023] unit increase	Affymetrix [321016] (imputed)	N
597	chr4	1683025	1683026	rs13129308	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p16.3	FAM53A	rs13129308-C	NR	2E-8		0.0175258	[0.011-0.024] unit increase	Affymetrix [323123] (imputed)	N
597	chr4	1685210	1685211	rs798726	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	4p16.3	NR	rs798726-C	0.81	2E-9		1.04	[1.03-1.06]	Affymetrix, Illumina [up to 17000000] (imputed)	N
597	chr4	1692531	1692532	rs113061588	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p16.3		rs113061588-T	NR	5E-13		0.0206	[0.015-0.026] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
597	chr4	1697336	1697337	rs34049648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4p16.3	SLBP	rs34049648-A	NR	5E-9		0.0181318	[0.012-0.024] unit increase	Affymetrix [321788] (imputed)	N
597	chr4	1697336	1697337	rs34049648	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	SLBP	rs34049648-A	NR	2E-19		0.0267854	[0.021-0.033] unit increase	Affymetrix [321016] (imputed)	N
597	chr4	1701316	1701317	rs2247341	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p16.3	SLBP	rs2247341-A	0.355	8E-7	(EA, women)	0.0235	[0.014-0.033] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
597	chr4	1701316	1701317	rs2247341	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p16.3	SLBP	rs2247341-A	0.355	6E-10	(EA)	0.0226	[0.015-0.03] unit increase	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
597	chr4	1701316	1701317	rs2247341	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p16.3	SLBP/FGFR3	rs2247341-A	0.36	2E-11		0.025	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
597	chr4	1702293	1702293	rs113751536	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	SLBP	rs113751536-CT	NR	2E-9		0.0169847	[0.011-0.023] unit decrease	Affymetrix [321016] (imputed)	N
598	chr4	1704243	1704244	rs11732213	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Cortical surface area (MOSTest)	26,502 European ancestry individuals	NA	4p16.3	CDC42EP3	rs11732213-?		5E-9				NR [7428630] (imputed)	N
598	chr4	1704243	1704244	rs11732213	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis of the hip or knee	39,427 European ancestry cases, 378,169 European ancestry controls	NA	4p16.3	NR	rs11732213-T	0.81	9E-10		1.06	[1.04-1.08]	Affymetrix, Illumina [up to 17000000] (imputed)	N
598	chr4	1704541	1704542	rs2236995	27701424	Castano-Betancourt MC	2016-10-04	PLoS Genet	Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis.	Hip minimal joint space width	6,523 European ancestry individuals, 6,490 individuals	1,572 European ancestry individuals, 6,655 individuals	4p16.3	SLBP	rs2236995-T	0.49	1E-6		0.049	[0.029-0.069] unit increase	Illumina [2385183] (imputed)	N
598	chr4	1711403	1711404	rs2592831	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.3		rs2592831-?	NR	4E-8				NR [~ 8900000] (imputed)	N
598	chr4	1711775	1711776	rs78364480	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4p16.3	SLBP	rs78364480-G	0.811927	1E-15		0.00516991	[0.0039-0.0065] unit decrease	Affymetrix [13995440] (imputed)	N
598	chr4	1715348	1715349	rs2854920	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p16.3	RP11-572O17.1	rs2854920-T	0.3453	2E-6		0.0319	[0.019-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
598	chr4	1716769	1716770	rs798748	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p16.3	SLBP	rs798748-C	0.617891	4E-15		0.018125866	[0.014-0.023] unit increase	Affymetrix [93095623] (imputed)	N
598	chr4	1716769	1716770	rs798748	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	4p16.3	NR	rs798748-C	0.62	3E-9		1.07	[1.05-1.1]	Affymetrix, Illumina [up to 17000000] (imputed)	N
598	chr4	1717170	1717171	rs798750	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4p16.3	TMEM129	rs798750-G	NR	2E-8		0.00718707	[0.0047-0.0097] unit increase	Affymetrix [10061374] (imputed)	N
598	chr4	1723264	1723265	rs3134866	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4p16.3		rs3134866-?	NR	9E-15				NR [9705931] (imputed)	N
598	chr4	1731620	1731621	rs798763	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	TACC3	rs798763-T	NR	8E-11		0.0188172	[0.013-0.024] unit decrease	Affymetrix [321016] (imputed)	N
598	chr4	1734238	1734239	rs798766	24163127	Figueroa JD	2013-10-24	Hum Mol Genet	Genome-wide association study identifies multiple loci associated with bladder cancer risk.	Bladder cancer	up to 2,305 European ancestry cases, up to 3,901 European ancestry controls	up to 13,298 cases, up to 54,535 controls	4p16.3	TMEM129, TACC3, FGFR3	rs798766-T	0.19	7E-25		1.22	[1.18-1.27]	Illumina [462190]	N
598	chr4	1734238	1734239	rs798766	20972438	Rothman N	2010-10-24	Nat Genet	A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.	Bladder cancer	3,532 European ancestry cases, 5,120 European ancestry controls	8,381 cases, 48,275 controls	4p16.3	TMEM129, TACC3, FGFR3	rs798766-T	0.19	4E-13		1.2	[1.14-1.26]	Illumina [589299]	N
598	chr4	1734238	1734239	rs798766	20348956	Kiemeney LA	2010-03-28	Nat Genet	A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.	Urinary bladder cancer	1,889 European ancestry cases, 39,310 European ancestry controls	2,850 European ancestry cases, 6,239 European ancestry controls	4p16.3	TMEM129, SLBP, TACC3, FGFR3	rs798766-T	0.19	1E-11		1.24	[1.17-1.32]	Illumina [304703]	N
598	chr4	1736736	1736737	rs28499138	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p16.3	TACC3	rs28499138-C	NR	2E-8		0.0172642	[0.011-0.023] unit decrease	Affymetrix [323123] (imputed)	N
598	chr4	1736736	1736737	rs28499138	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p16.3	NR	rs28499138-?	NR	8E-11		0.1433	[0.1-0.19] unit decrease	Affymetrix [7794483] (imputed)	N
598	chr4	1736736	1736737	rs28499138	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p16.3	NR	rs28499138-?	NR	3E-9	(male)	0.20674	[0.14-0.28] unit decrease	Affymetrix [7794483] (imputed)	N
598	chr4	1745485	1745486	rs4865465	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p16.3		rs4865465-A	NR	5E-28		0.0158	[0.013-0.019] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
598	chr4	1747522	1747523	rs28643543	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein FGFR3	5,361 Icelandic ancestry individuals	NA	4p16.3		rs28643543-A	0.2556	1E-13		0.157268	[0.12-0.2] unit decrease	Illumina [7506463] (imputed)	N
598	chr4	1748199	1748200	rs4507432	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p16.3	TACC3, AC016773.1	rs4507432-G	0.775091	2E-13		0.01967874	[0.014-0.025] unit increase	Affymetrix [93095623] (imputed)	N
598	chr4	1748199	1748200	rs4507432	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p16.3	FAM53A, SLBP, TMEM129, TACC3	rs4507432-?		5E-13				NR [7428630] (imputed)	N
598	chr4	1749159	1749160	rs11731421	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p16.3	TACC3	rs11731421-A	NR	1E-15		0.0260971	[0.02-0.032] unit increase	Affymetrix [323123] (imputed)	N
598	chr4	1749159	1749160	rs11731421	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Inferior temporal gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p16.3	NR	rs11731421-?		2E-6				Illumina [4322238] (imputed)	N
598	chr4	1749159	1749160	rs11731421	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs11731421-?	NR	6E-51				NR [~ 8900000] (imputed)	N
598	chr4	1750009	1750010	rs73079609	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4p16.3		rs73079609-A	0.1679	2E-6		32.32068	z score increase	NR [6814003]	N
598	chr4	1750154	1750155	rs7665127	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p16.3	NR	rs7665127-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
598	chr4	1750486	1750487	rs7680647	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.3	TACC3	rs7680647-T	0.6438	2E-20		0.0184	[0.014-0.022] unit decrease	Affymetrix [18391927] (imputed)	N
598	chr4	1753423	1753424	rs11724531	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.3		rs11724531-A	0.22	9E-48		14.52	z score increase	Affymetrix [9061022] (imputed)	N
598	chr4	1753423	1753424	rs11724531	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p16.3		rs11724531-A	0.22	2E-15		7.92	z score increase	Affymetrix [9061022] (imputed)	N
598	chr4	1753423	1753424	rs11724531	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p16.3	NR	rs11724531-A	0.1965	2E-14				NR [9056863] (imputed)	N
598	chr4	1753423	1753424	rs11724531	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Bladder cancer	2,242 European ancestry cases, 410,350 European ancestry controls	NA	4p16.3		rs11724531-A	NR	8E-12		1.2796	NR	Affymetrix [7846216] (imputed)	N
598	chr4	1754514	1754515	rs2403274	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.3	FGFR3	rs2403274-C	0.7521875	7E-10	(FGFR3, 13669_6_3)	0.17671633	[0.12-0.23] unit increase	Illumina [> 1000000] (imputed)	N
598	chr4	1755548	1755549	rs13142863	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p16.3		rs13142863-T	0.22	2E-25		10.43	z score increase	Affymetrix [9061022] (imputed)	N
598	chr4	1755548	1755549	rs13142863	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p16.3	NR	rs13142863-T	0.1965	1E-17				NR [9056863] (imputed)	N
598	chr4	1760842	1760843	rs113742985	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4p16.3	NR	rs113742985-?	NR	2E-6		0.08462962	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
598	chr4	1760926	1760927	rs1530586	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis of the hip or knee (with total joint replacement)	40,887 European ancestry cases, 327,689 European ancestry controls	NA	4p16.3		rs1530586-T	0.8001	3E-14		1.0857815	[1.063039639-1.109009873]	Affymetrix, Illumina [NR] (imputed)	N
598	chr4	1763392	1763393	rs57840661	34743558	Zekavat SM	2021-11-08	Circulation	Deep Learning of the Retina Enables Phenome- and Genome-wide Analyses of the Microvasculature.	Retinal vascular fractal density	38,932 British ancestry individuals	NA	4p16.3		rs57840661-G	0.82641	7E-6		0.040458	[0.023-0.058] unit increase	Affymetrix [15580782] (imputed)	N
598	chr4	1781295	1781296	rs10032922	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4p16.3	NR	rs10032922-T	0.32031	1E-9		0.0201814	[0.014-0.027] unit decrease	NR [19129689] (imputed)	N
598	chr4	1782585	1782586	rs4865473	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs4865473-G	0.2919	2E-9		0.0716	[0.048-0.095] unit increase	Affymetrix, Illumina [1077427] (imputed)	N
598	chr4	1784402	1784403	rs56337234	33830302	Inshaw JRJ	2021-04-08	Diabetologia	Analysis of overlapping genetic association in type 1 and type 2 diabetes.	Type 1 diabetes	7,467 European ancestry cases, 10,218 European ancestry controls	NA	4p16.3	TMEM129	rs56337234-T		4E-6		0.1142075	[0.066-0.163] unit increase	Affymetrix, Illumina [7769284] (imputed)	N
598	chr4	1784402	1784403	rs56337234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p16.3	NR	rs56337234-C	0.5048	2E-18		0.0409	[0.032-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
598	chr4	1784402	1784403	rs56337234	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs56337234-C	0.4958	3E-25		0.0426	[0.035-0.051] unit increase	Affymetrix, Illumina [at least 945603] (imputed)	N
598	chr4	1784402	1784403	rs56337234	32514122	Ishigaki K	2020-06-08	Nat Genet	Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases.	Type 2 diabetes	40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls	NA	4p16.3		rs56337234-T	NR	4E-9		0.9380843	[0.918395990572455-0.958194709760036]	Illumina [8919992] (imputed)	N
598	chr4	1784402	1784403	rs56337234	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4p16.3	MAEA	rs56337234-C	0.28	7E-10		1.0752687	[1.05-1.1]	Illumina [12557761] (imputed)	N
598	chr4	1784402	1784403	rs56337234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	4p16.3		rs56337234-?	NR	2E-10				NR [~ 8900000] (imputed)	N
598	chr4	1784402	1784403	rs56337234	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.3	MAEA	rs56337234-C	0.5026	9E-18		1.06	[1.04-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
598	chr4	1784604	1784605	rs6831006	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4p16.3	MAEA, PCGF3	rs6831006-G	0.274	3E-16		1.07	[1.05-1.09]	Affymetrix, Illumina [11800000] (imputed)	N
598	chr4	1793282	1793283	rs746779	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	FGFR3	rs746779-T	NR	7E-9		0.0222046	[0.015-0.03] unit decrease	Affymetrix [321016] (imputed)	N
598	chr4	1804275	1804276	rs3135877	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p16.3		rs3135877-?	NR	2E-13				NR [~ 8900000] (imputed)	N
598	chr4	1806518	1806519	rs3135890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p16.3	NR	rs3135890-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
598	chr4	1806518	1806519	rs3135890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs3135890-?	NR	1E-43				NR [~ 8900000] (imputed)	N
598	chr4	1806628	1806629	rs61735104	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Height	458,235 European ancestry individuals	NA	4p16.3		rs61735104-?	NR	6E-16		0.0997911	[0.076-0.124] unit decrease	NR [9800000] (imputed)	N
599	chr4	1835545	1835546	rs10019772	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.3	FGFR3	rs10019772-?	NR	3E-6	(gamma aminoisobutyric acid)	3.6517565	[2.13-5.18] unit decrease	Affymetrix [at least 2500000] (imputed)	N
599	chr4	1960599	1960600	rs7377981	31324189	Kim W	2019-07-19	Respir Res	DSP variants may be associated with longitudinal change in quantitative emphysema.	Emphysema annual change measurement in smokers (percent low attenuation area)	4,427 European ancestry individuals, 1,158 African American individuals	NA	4p16.3	NSD2	rs7377981-C	NR	2E-6		0.185	[0.11-0.26] unit increase	Illumina [NR] (imputed)	N
600	chr4	1983555	1983556	rs2187692	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs2187692-?	NR	1E-24				NR [~ 8900000] (imputed)	N
600	chr4	1984732	1984732	rs16342	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4p16.3	NR	rs16342-TAACA	0.359	1E-6	(EA)	0.0361	[0.022-0.051] unit increase	Illumina [~ 11800000] (imputed)	N
600	chr4	1986937	1986938	rs3135123	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	1,446 Hispanics ancestry individuals	NA	4p16.3		rs3135123-?	NR	9E-6		0.19	[0.11-0.27] unit decrease	Affymetrix [NR] (imputed)	N
600	chr4	1986971	1986972	rs495367	32424353	Zhang H	2020-05-18	Nat Genet	Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.	Invasive breast cancer	106,278 European ancestry cases, 91,477 European ancestry controls	NA	4p16.3	NR	rs495367-?	NR	2E-8	(mixed effect)			Illumina [~ 9700000] (imputed)	N
600	chr4	2084516	2084517	rs114395630	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	4p16.3	POLN	rs114395630-C	0.01	8E-6	(African American)	0.79	0.45-1.13 unit decrease	Illumina [NR] (imputed)	N
601	chr4	2103095	2103096	rs1923775	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	4p16.3		rs1923775-?	NR	9E-6	(MLM)	0.1839497	[0.1-0.26] unit increase	Illumina [~ 9000000] (imputed)	N
601	chr4	2103095	2103096	rs1923775	22159054	Logue MW	2011-12-01	Arch Neurol	A comprehensive genetic association study of Alzheimer disease in African Americans.	Alzheimer's disease	513 African American cases, 496 African American controls	NA	4p16.3	POLN	rs1923775-T	0.25	6E-6		1.6	[1.30-1.95]	Illumina [2505093] (imputed)	N
601	chr4	2146435	2146436	rs17132259	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p16.3		rs17132259-T	0.214853	7E-9		0.0148286	[0.0098-0.0199] unit decrease	Illumina [13479295] (imputed)	N
601	chr4	2146435	2146436	rs17132259	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p16.3	POLN	rs17132259-?	NR	7E-9		0.020957055	[0.014-0.028] unit decrease	Illumina [27896057] (imputed)	N
601	chr4	2165492	2165493	rs55829085	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p16.3	POLN	rs55829085-A	0.9545	6E-13		0.2672	[0.19-0.34] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
601	chr4	2185562	2185563	rs7690222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4p16.3		rs7690222-T	0.323489	2E-9		0.0175933	[0.012-0.023] unit decrease	Illumina [13479924] (imputed)	N
601	chr4	2185562	2185563	rs7690222	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p16.3		rs7690222-T	NR	2E-8		0.0147	[0.0096-0.0198] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
601	chr4	2187376	2187377	rs9993696	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (positive Marder score)	1,390 European ancestry cases	NA	4p16.3		rs9993696-T	NR	3E-6	(GLM)	2.1804	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
601	chr4	2187376	2187377	rs9993696	27846195	Li Q	2016-11-11	Pharmacogenet Genomics	Genome-wide association study of paliperidone efficacy.	Response to paliperidone in schizophrenia (PANSS score)	1,390 European ancestry individuals	NA	4p16.3		rs9993696-T	NR	8E-6	(GLM)	6.3351	[NR] unit decrease	Illumina [~ 9000000] (imputed)	N
601	chr4	2195023	2195024	rs10018786	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p16.3		rs10018786-T	0.8959	2E-10		0.2072875	[0.14-0.28] mmHg decrease	Affymetrix, Illumina [242865] (imputed)	N
601	chr4	2195023	2195024	rs10018786	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p16.3		rs10018786-T	0.896	5E-14		0.16467094	[0.12-0.21] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
602	chr4	2250108	2250109	rs880674	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p16.3	MXD4	rs880674-T	0.857945	4E-8		0.0150058	[0.0096-0.0204] unit decrease	Affymetrix [NR] (imputed)	N
602	chr4	2252979	2252980	rs2071658	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p16.3		rs2071658-G	NR	3E-14		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
602	chr4	2255062	2255063	rs2282764	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4p16.3		rs2282764-G	NR	5E-9		0.0163	[0.011-0.022] unit increase	Affymetrix, Illumina [20525311] (imputed)	N
602	chr4	2259462	2259463	rs9992013	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p16.3		rs9992013-?	NR	3E-8				NR [~ 8900000] (imputed)	N
602	chr4	2267565	2267566	rs2269486	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p16.3		rs2269486-T	NR	2E-12		0.0188	[0.014-0.024] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
602	chr4	2267565	2267566	rs2269486	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p16.3	MXD4	rs2269486-T	0.160853	4E-12		0.021412995	[0.015-0.027] unit increase	Affymetrix [93095623] (imputed)	N
602	chr4	2267565	2267566	rs2269486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs2269486-T	0.202617	6E-17				Affymetrix, Illumina [23467995] (imputed)	N
602	chr4	2267565	2267566	rs2269486	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4p16.3	NR	rs2269486-T	0.163573	9E-16		0.021333	[0.016-0.027] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
602	chr4	2281526	2281527	rs556607390	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer (MTAG)	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p16.3	Intergenic	rs556607390-?		3E-6		1.1	[1.05-1.14]	Illumina [7645193] (imputed)	N
602	chr4	2281526	2281527	rs556607390	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Cervical cancer	538 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p16.3	Intergenic	rs556607390-?		6E-6		2.25	[1.58-3.21]	Illumina [7645193] (imputed)	N
602	chr4	2290697	2290698	rs57681851	26912274	Zeng Y	2016-02-25	Sci Rep	Novel loci and pathways significantly associated with longevity.	Longevity	2,178 Han Chinese ancestry centenarian cases, 2,299 Han Chinese ancestry middle-age controls	NA	4p16.3	ZFYVE28	rs57681851-G	NR	2E-6		1.348	[NR]	Illumina [5595657] (imputed)	N
602	chr4	2292920	2292921	rs4602560	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Antibody status in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p16.3	NR	rs4602560-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
602	chr4	2301482	2301482	rs397964944	30287806	Zhou H	2018-10-04	Transl Psychiatry	Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression.	Nicotine dependence and major depression (severity of comorbidity)	3,724 African American individuals	NA	4p16.3	ZFYVE28	rs397964944-GA	0.43	7E-6		0.5849	[0.33-0.84] unit increase	Illumina [9520174] (imputed)	N
602	chr4	2324191	2324192	rs79194530	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs79194530-A	0.01742	1E-10	(FTH1)	0.157	NR unit increase	Illumina [1671387] (imputed)	N
603	chr4	2395296	2395297	rs959770	23212062	Fanous AH	2012-12-01	Am J Psychiatry	Genome-wide association study of clinical dimensions of schizophrenia: polygenic effect on disorganized symptoms.	Schizophrenia	2,454 European ancestry cases	NA	4p16.3	ZFYVE28	rs959770-?	NR	9E-6	(Positive symptoms)	0.1198	[NR] unit decrease	Affymetrix [696491]	N
603	chr4	2397775	2397776	rs116608013	32066700	Zhang R	2020-02-05	Transl Psychiatry	Genome-wide study of immune biomarkers in cerebrospinal fluid and serum from patients with bipolar disorder and controls.	Serum immune biomarker levels	184 Scandinavian ancestry bipolar disorder cases, 107 Scandinavian ancestry controls	NA	4p16.3	ZFYVE28	rs116608013-A	0.987	3E-8	(YKL-40)	49182.0	NR unit decrease	Affymetrix, Illumina [> 5000000] (imputed)	N
603	chr4	2406320	2406321	rs3135071	26379185	Garcia-Etxebarria K	2015-09-17	PLoS One	No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.	Influenza A (H1N1) severity	49 European ancestry severe cases, 107 European ancestry mild cases	NA	4p16.3	ZFYVE28	rs3135071-?	0.02198	3E-6		9.963	[3.192-31.09]	Affymetrix [547296]	N
603	chr4	2406791	2406792	rs75385950	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs75385950-C	0.01045	1E-8	(PON1)	0.2007	NR unit increase	Illumina [1671387] (imputed)	N
603	chr4	2430234	2430235	rs12500482	28093568	Trampush JW	2017-01-17	Mol Psychiatry	GWAS meta-analysis reveals novel loci and genetic correlates for general cognitive function: a report from the COGENT consortium.	Cognitive function	up to 35,298 European ancestry individuals	NA	4p16.3	CFAP99	rs12500482-?	NR	1E-6		0.038	[0.022-0.054] unit increase	Affymetrix, Illumina [8037763] (imputed)	N
603	chr4	2455512	2455513	rs2696376	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.3	ZFYVE28	rs2696376-?	NR	9E-6	(pyridoxate)	3.4713063	[1.94-5.01] unit decrease	Affymetrix [at least 2500000] (imputed)	N
603	chr4	2460570	2460571	rs73205493	30818990	Yu D	2019-03-01	Am J Psychiatry	Interrogating the Genetic Determinants of Tourette's Syndrome and Other Tic Disorders Through Genome-Wide Association Studies.	Tourette syndrome	4,271 European ancestry cases, 548 European ancestry cases from 207 families, 9,488 European ancestry controls	706 Icelandic ancestry cases, 6,068 Icelandic ancestry controls	4p16.3	LOC402160, RNF4, ZFYVE28	rs73205493-T	0.3436	2E-6		1.1509641		Illumina [8265319] (imputed)	N
603	chr4	2467750	2467751	rs35400491	33563987	Tyrrell J	2021-02-09	Nat Commun	Genetic predictors of participation in optional components of UK Biobank.	Participation in an health questionnaire (not invited vs invited)	336,633 European ancestry cases, 114,464 European ancestry controls	NA	4p16.3	NR	rs35400491-C	0.849996	1E-8		0.993	[0.990, 0.995]	Affymetrix [39302896] (imputed)	N
603	chr4	2485614	2485615	rs846178	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4p16.3	RNF4	rs846178-?	NR	2E-6		1.012	[0.45-1.57] unit decrease	Illumina [at least 13000000] (imputed)	N
604	chr4	2533278	2533279	rs73207312	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.3	NR	rs73207312-?	NR	1E-7		5.281	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
604	chr4	2576101	2576102	rs13129679	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry colorectal cancer cases, 636 Austrian ancestry advanced colorectal adenoma cases, 4,294 European ancestry controls	NA	4p16.3	RNF4	rs13129679-?		2E-7		2.3	[NR]	Affymetrix [492217] (imputed)	N
604	chr4	2576101	2576102	rs13129679	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal adenoma (advanced)	636 Austrian ancestry cases, 4,294 European ancestry controls	NA	4p16.3	RNF4	rs13129679-?		2E-6		2.721	[NR]	Affymetrix [492217] (imputed)	N
605	chr4	2626568	2626569	rs3864117	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Eosinophil counts	349,856 European ancestry individuals, 93,063 East Asian ancestry individuals	NA	4p16.3		rs3864117-A	NR	3E-9		0.0099	[0.0066-0.0132] unit increase	Affymetrix, Illumina [20529668] (imputed)	N
605	chr4	2658947	2658948	rs3216207	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	4p16.3		rs3216207-A	NR	1E-8		0.0625	[0.041-0.084] unit increase	Affymetrix, Illumina [25842955] (imputed)	N
605	chr4	2689448	2689449	rs1828803	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p16.3	FAM193A	rs1828803-A	0.393122	3E-10		0.014237469	[0.0098-0.0187] unit increase	Affymetrix [93095623] (imputed)	N
605	chr4	2689448	2689449	rs1828803	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4p16.3	NR	rs1828803-A	0.392417	1E-10		0.013079	[0.0091-0.0171] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
605	chr4	2689448	2689449	rs1828803	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p16.3		rs1828803-?	NR	5E-12				NR [~ 8900000] (imputed)	N
605	chr4	2694772	2694773	rs231708	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4p16.3		rs231708-C	NR	7E-15		0.0151	[0.011-0.019] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
605	chr4	2694772	2694773	rs231708	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p16.3		rs231708-?	NR	1E-13				NR [~ 8900000] (imputed)	N
605	chr4	2694772	2694773	rs231708	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p16.3	FAM193A	rs231708-C	0.6921	5E-18		0.2281	[0.18-0.28] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
605	chr4	2697299	2697300	rs4690085	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4p16.3	FAM193A	rs4690085-G	0.46519999999999995	2E-8		1.0194875		Affymetrix [11880941] (imputed)	N
605	chr4	2698363	2698364	rs3733215	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p16.3	FAM193A	rs3733215-T	0.4115	1E-14		0.2065	[0.15-0.26] mmHg decrease	Affymetrix [NR] (imputed)	N
605	chr4	2700843	2700844	rs231694	33272962	Yin X	2020-12-03	Ann Rheum Dis	Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus.	Systemic lupus erythematosus	13,377 East Asian ancestry cases, 194,993 East Asian ancestry controls	NA	4p16.3	FAM193A	rs231694-T	0.38	1E-8		1.111	[1.08-1.15]	Illumina [11270530] (imputed)	N
605	chr4	2702803	2702804	rs9683585	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	4p16.3		rs9683585-C	0.5608	2E-8		0.012	[0.0081-0.0159] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
605	chr4	2702803	2702804	rs9683585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs9683585-C	0.5677	2E-9		0.0084	[0.0057-0.0111] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
605	chr4	2702803	2702804	rs9683585	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.3	Intergenic	rs9683585-C	0.5677	4E-12	(MTAG)	0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
605	chr4	2707031	2707032	rs4690015	31647587	Willems EL	2019-10-24	Genet Epidemiol	Transethnic meta-analysis of metabolic syndrome in a multiethnic study.	Diastolic blood pressure	281 African American individuals from 73 families, 516 European American individuals from 75 families, 125 East Asian ancestry individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4p16.3	FAM193A	rs4690015-?	NR	9E-7	(Random Effects)			Illumina [3153931] (imputed)	N
605	chr4	2717689	2717690	rs2295499	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4p16.3	NR	rs2295499-C	0.406561	4E-11		0.042270936	[0.03-0.055] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
605	chr4	2717689	2717690	rs2295499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p16.3	Intergenic	rs2295499-T	0.4415	3E-12	(MTAG)	0.0161	[0.012-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
605	chr4	2717689	2717690	rs2295499	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4p16.3	Intergenic	rs2295499-T	0.4415	3E-11		0.0191	[0.013-0.025] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
605	chr4	2717689	2717690	rs2295499	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p16.3	NR	rs2295499-T	NR	3E-9		5.956	z-score decrease	Affymetrix, Illumina [9295118] (imputed)	N
605	chr4	2717689	2717690	rs2295499	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4p16.3	FAM193A	rs2295499-T	NR	7E-10		0.01809806	[0.012-0.024] unit decrease	Affymetrix [NR]	N
605	chr4	2717689	2717690	rs2295499	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability (MTAG)	436,124 European ancestry individuals	NA	4p16.3	FAM193A	rs2295499-?	NR	4E-8		5.5	z score decrease	Affymetrix, Illumina, Perlegen [7333576] (imputed)	N
605	chr4	2717689	2717690	rs2295499	29186694	Lam M	2017-11-28	Cell Rep	Large-Scale Cognitive GWAS Meta-Analysis Reveals Tissue-Specific Neural Expression and Potential Nootropic Drug Targets.	Cognitive ability	107,207 European ancestry individuals	NA	4p16.3	FAM193A	rs2295499-?	NR	2E-6		4.78	z score decrease	Affymetrix, Illumina [7357080] (imputed)	N
605	chr4	2722792	2722793	rs4690028	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p16.3	FAM193A	rs4690028-T	0.3922	1E-12		0.1395	[0.1-0.18] mmHg decrease	Affymetrix [NR] (imputed)	N
605	chr4	2722814	2722815	rs4690029	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.3	FAM193A	rs4690029-T	NR	1E-9		6.073	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
605	chr4	2733947	2733948	rs11543194	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	4p16.3	NR	rs11543194-G	NR	2E-8		0.11	[0.071-0.149] unit increase	Affymetrix, Illumina [NR] (imputed)	N
605	chr4	2733947	2733948	rs11543194	32314116	Zhang H	2020-04-20	Osteoporos Int	Pleiotropic loci underlying bone mineral density and bone size identified by a bivariate genome-wide association analysis.	Bone mineral density (hip) and hip bone size	3,267 European ancestry individuals, 1,619 Chinese ancestry individuals, 843 African American individuals, 446 Hispanic individuals	NA	4p16.3	NR	rs11543194-G	NR	1E-8				Affymetrix, Illumina [NR] (imputed)	N
605	chr4	2739374	2739375	rs180919520	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p16.3	Intergenic	rs180919520-C	0.997	5E-6	(AA)	0.218	unit increase	Illumina [NR] (imputed)	N
605	chr4	2748662	2748663	rs4690055	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	4p16.3	TNIP2	rs4690055-A	NR	5E-8		0.91	[0.87-0.95]	Illumina [NR] (imputed)	N
605	chr4	2752424	2752425	rs10937913	29374233	Lu AT	2018-01-26	Nat Commun	GWAS of epigenetic aging rates in blood reveals a critical role for TERT.	Extrinsic epigenetic age acceleration	8,393 European ancestry individuals	1,023 African American individuals, 491 Hispanic individuals	4p16.3	TNIP2	rs10937913-A	0.46	2E-11		0.5913	[0.42-0.76] unit decrease	Affymetrix, Illumina [~ 7400000] (imputed)	N
606	chr4	2769268	2769269	rs1877721	31604244	International Multiple Sclerosis Genetics Consortium	2019-09-01	Science	Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.	Multiple sclerosis	14,802 European and unknown ancestry cases, 26,703 European and unknown ancestry controls	32,627 European and unknown ancestry cases, 41,672 European and unknown ancestry controls	4p16.3	TNIP2	rs1877721-G	NR	2E-6		1.053	NR	Affymetrix, Illumina [8278136] (imputed)	N
606	chr4	2798169	2798170	rs231331	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis (self-reported)	12,658 European ancestry cases, 50,898 European ancestry controls		4p16.3	NR	rs231331-A	0.22481	8E-6		1.07862	[1.04405-1.11434]	Affymetrix [16499239] (imputed)	N
606	chr4	2831414	2831415	rs146213141	34216518	Osman Y	2021-07-03	Int J Lab Hematol	Functional multigenic variations associated with hodgkin lymphoma.	Hodgkin's lymphoma	56 Greater Middle Eastern ancestry cases,  5 unknown ancestry cases, 36 Greater Middle Eastern ancestry controls	NA	4p16.3	SH3BP2	rs146213141-G	0.278	2E-11		0.03385		Illumina [243345]	N
606	chr4	2832188	2832189	rs231398	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4p16.3		rs231398-?	NR	6E-9				NR [~ 8900000] (imputed)	N
606	chr4	2832726	2832727	rs189139	24076602	Beecham AH	2013-11-01	Nat Genet	Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.	Multiple sclerosis	14,498 European ancestry cases, 24,091 European ancestry controls	14,802 European ancestry cases, 26,703 European ancestry controls	4p16.3	SH3BP2	rs189139-A	0.33	1E-6		1.07	[1.04-1.10]	Illumina [161311]	N
606	chr4	2845273	2845274	rs35780153	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p16.3	NR	rs35780153-T	0.279	3E-12		0.0084643	[0.0061-0.0108] unit decrease	NR [9732723] (imputed)	N
606	chr4	2846798	2846799	rs1877723	31837886	Kennedy OJ	2019-12-02	Am J Kidney Dis	Coffee Consumption and Kidney Function: A Mendelian Randomization Study.	Coffee consumption (cups per day)	227,666 British ancestry individuals	NA	4p16.3	ADD1	rs1877723-T	0.313	3E-10		0.04	NR cups per day decrease	NR [NR]	N
606	chr4	2858004	2858005	rs1263412	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	ADD1	rs1263412-G	0.3029	9E-10		0.013471939	[0.0092-0.0178] unit increase	Affymetrix [up to 18485882] (imputed)	N
606	chr4	2869928	2869929	rs114643193	28642124	Hensman Moss DJ	2017-06-20	Lancet Neurol	Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study.	Huntington's disease progression	1,989 European and unknown ancestry mutation carriers	NA	4p16.3	ADD1, MFSD10, NOP14, NOP14-AS1, SH3BP2	rs114643193-?	NR	3E-6				Illumina [9650000] (imputed)	N
606	chr4	2881255	2881256	rs624833	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	4p16.3		rs624833-T	0.695	7E-10		0.013	[0.0091-0.0169] unit increase	Affymetrix [up to 90000000] (imputed)	N
606	chr4	2881255	2881256	rs624833	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4p16.3	NR	rs624833-G	0.302	7E-13		0.0114003	[0.0083-0.0145] unit increase	NR [9732723] (imputed)	N
606	chr4	2881255	2881256	rs624833	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	4p16.3	NR	rs624833-G	0.302	2E-9		0.016	[0.011-0.021] unit increase	NR [~ 10000000] (imputed)	N
606	chr4	2883171	2883172	rs6824567	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs6824567-T	0.2827	9E-17		0.013	[0.0099-0.0161] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
606	chr4	2883171	2883172	rs6824567	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.3	Intergenic	rs6824567-T	0.2827	3E-17	(MTAG)	0.0123	[0.0094-0.0152] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
607	chr4	2885314	2885315	rs79054532	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4p16.3	NA	rs79054532-T		2E-9		0.0121916	[0.0082-0.0162] unit decrease	Illumina [13288253] (imputed)	N
607	chr4	2888440	2888441	rs3775068	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p16.3	ADD1	rs3775068-G	0.563512	1E-10		0.014415038	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
607	chr4	2919657	2919658	rs12647647	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income	286,301 British ancestry individuals	NA	4p16.3	ADD1	rs12647647-A	NR	1E-8		0.011434	[0.0075-0.0154] unit increase	Affymetrix [18485882] (imputed)	N
607	chr4	2938650	2938651	rs2798287	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	NOP14-AS1	rs2798287-A	NR	2E-9		0.0170701	[0.012-0.023] unit decrease	Affymetrix [321016] (imputed)	N
607	chr4	2938650	2938651	rs2798287	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	NOP14-AS1	rs2798287-A	0.4999	1E-9		0.012299422	[0.0083-0.0163] unit decrease	Affymetrix [up to 18485882] (imputed)	N
607	chr4	2941987	2941988	rs2032463	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Cigarettes smoked per day (MTAG)	up to 403,928 European ancestry individuals	NA	4p16.3	NR	rs2032463-C	0.424	2E-10		0.0141412	[0.0098-0.0185] unit decrease	NR [9732723] (imputed)	N
607	chr4	2946480	2946481	rs16843629	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.3		rs16843629-?	NR	4E-8				NR [~ 8900000] (imputed)	N
607	chr4	2959671	2959672	rs2256086	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	NOP14-AS1, NOP14	rs2256086-G	0.4042	2E-10		0.013137886	[0.0091-0.0172] unit increase	Affymetrix [up to 18485882] (imputed)	N
607	chr4	2961712	2961713	rs2488808	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking behaviour (cigarettes smoked per day)	up to 153,918 European ancestry individuals	NA	4p16.3	NOP14	rs2488808-A	0.308	3E-8		0.0246	[0.016-0.033] unit decrease	Illumina [~ 250000] (imputed)	N
607	chr4	2964387	2964388	rs2488813	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p16.3		rs2488813-?	NR	3E-9				NR [~ 8900000] (imputed)	N
607	chr4	2977348	2977349	rs188295500	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4p16.3	GRK4	rs188295500-T	0.0271	3E-6		0.5492	[0.32-0.78] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
607	chr4	2990498	2990499	rs2960306	30617275	Erzurumluoglu AM	2019-01-07	Mol Psychiatry	Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	Smoking behaviour (cigarettes smoked per day)	128,746 European and South Asian ancestry individuals	up to 275,596 European ancestry individuals	4p16.3	GRK4	rs2960306-T	0.34	1E-9		0.024	[0.014-0.034] unit decrease (replication)	Affymetrix, Illumina [up to 1207583] (imputed)	N
607	chr4	2991906	2991907	rs192519054	31420334	Lindstrom S	2019-08-16	Blood	Genomic and Transcriptomic Association Studies Identify 16 Novel Susceptibility Loci for Venous Thromboembolism.	Venous thromboembolism	29,435 European ancestry cases, 157,769 European ancestry controls	NA	4p16.3	NR	rs192519054-?	NR	8E-8		0.4241	[0.27-0.58] unit increase	Affymetrix, Illumina [12923718] (imputed)	N
607	chr4	3006042	3006043	rs1024323	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking behaviour (cigarettes smoked per day)	up to 377,334 European ancestry individuals	NA	4p16.3	NR	rs1024323-T	0.382	9E-9		0.014415942	[0.0095-0.0193] unit decrease	NR [~ 10000000] (imputed)	N
608	chr4	3015552	3015553	rs1140085	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	GRK4	rs1140085-A	0.1436	8E-10		0.01803245	[0.012-0.024] unit increase	Affymetrix [up to 18485882] (imputed)	N
608	chr4	3030096	3030097	rs3775065	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.3	GRK4	rs3775065-A	0.080871	1E-9		0.02604636	[0.018-0.034] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr4	3041937	3041938	rs2798304	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	GRK4	rs2798304-C	0.4612	7E-9		0.011770266	[0.0078-0.0157] unit decrease	Affymetrix [up to 18485882] (imputed)	N
608	chr4	3051939	3051940	rs1263309	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs1263309-T	0.503755	3E-15				Affymetrix, Illumina [23114412] (imputed)	N
608	chr4	3052824	3052825	rs1313766	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4p16.3	NR	rs1313766-C	0.507094	8E-18		0.016582	[0.013-0.02] SD unit increase	Affymetrix, Illumina [50250472] (imputed)	N
608	chr4	3057907	3057908	rs1313771	33532862	Hartiala JA	2021-02-03	Eur Heart J	Genome-wide analysis identifies novel susceptibility loci for myocardial infarction.	Myocardial infarction	14,825 European ancestry cases, 44,000 European and unknown ancestry cases, 2,680 cases, 380,970 European ancestry controls, 123,504 European and unknown ancestry controls, 73,242 controls	NA	4p16.3	GRK4, HTT	rs1313771-C	0.523639	5E-6		1.03	[1.02-1.05]	NR [8126035] (imputed)	N
608	chr4	3064003	3064004	rs2798297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	4p16.3		rs2798297-A	0.37	1E-12		0.014	mmol/L increase	NR [NR] (imputed)	N
608	chr4	3064003	3064004	rs2798297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	4p16.3		rs2798297-A	0.37	3E-15		0.015	nmol/L increase	NR [NR] (imputed)	N
608	chr4	3064003	3064004	rs2798297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4p16.3		rs2798297-A	0.37	1E-24				NR [NR] (imputed)	N
608	chr4	3064003	3064004	rs2798297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4p16.3		rs2798297-A	0.37	3E-11		0.01	% increase	NR [NR] (imputed)	N
608	chr4	3064003	3064004	rs2798297	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	4p16.3		rs2798297-A	0.37	6E-7		0.01	U/L increase	NR [NR] (imputed)	N
608	chr4	3064003	3064004	rs2798297	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p16.3	HTT-AS	rs2798297-A	0.366621	5E-9		0.013524274	[0.009-0.0181] unit increase	Affymetrix [93095623] (imputed)	N
608	chr4	3089563	3089564	rs61348208	32678081	Timmers PRHJ	2020-07-16	Nat Commun	Multivariate genomic scan implicates novel loci and haem metabolism in human ageing.	Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis)	at least 837,415 European ancestry individuals	NA	4p16.3	HTT	rs61348208-T	0.3967	3E-8				NR [7320282]	N
608	chr4	3089563	3089564	rs61348208	30642433	Timmers PR	2019-01-15	Elife	Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.	Parental lifespan	at least 500,193 European ancestry offspring	NA	4p16.3	HTT	rs61348208-T	0.39	6E-9		0.2299	[0.15-0.31] years increase	NR [up to 9000000] (imputed)	N
608	chr4	3098320	3098321	rs7659144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs7659144-C	0.655532	7E-9		0.0242777	[0.016-0.033] unit increase	NR [11722792] (imputed)	N
608	chr4	3098320	3098321	rs7659144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs7659144-C	0.655532	2E-8		0.0231929	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
608	chr4	3098320	3098321	rs7659144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs7659144-C	0.655532	2E-8		0.0233341	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
608	chr4	3098320	3098321	rs7659144	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs7659144-C	0.655532	2E-9		0.0252984	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
608	chr4	3098320	3098321	rs7659144	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.3	HTT	rs7659144-G	NR	5E-8		0.0161677	[0.01-0.022] unit increase	Affymetrix [321016] (imputed)	N
608	chr4	3104567	3104568	rs2024115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p16.3	HTT	rs2024115-G	0.382427	8E-14		0.016991064	[0.013-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr4	3104567	3104568	rs2024115	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4p16.3	HTT	rs2024115-G	0.382465	5E-13		0.016448265	[0.012-0.021] unit decrease	Affymetrix [93095623] (imputed)	N
608	chr4	3105199	3105200	rs73191188	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4p16.3		rs73191188-A	NR	3E-17		0.0187	[0.014-0.023] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
608	chr4	3105199	3105200	rs73191188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs73191188-A	0.357323	2E-15				Affymetrix, Illumina [24649327] (imputed)	N
608	chr4	3105199	3105200	rs73191188	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4p16.3	NR	rs73191188-A	0.353128	1E-17		0.016477	[0.013-0.02] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
608	chr4	3112108	3112109	rs55962025	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.3	NR	rs55962025-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
608	chr4	3112108	3112109	rs55962025	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p16.3		rs55962025-?	NR	6E-8				NR [~ 8900000] (imputed)	N
608	chr4	3112108	3112109	rs55962025	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	4p16.3	NR	rs55962025-?	NR	2E-6		0.02542	[0.015-0.036] unit decrease	Affymetrix [9658292] (imputed)	N
608	chr4	3116331	3116332	rs76778080	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	41,355 European ancestry men and 43,369 European ancestry women	NA	4p16.3	HTT	rs76778080-T	NR	8E-6	(men)	0.167963	[0.094-0.242] unit increase	Illumina [13520550] (imputed)	N
608	chr4	3132323	3132324	rs363085	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs363085-G	0.0122	2E-8	(EPHX1)	4.712	NR unit increase	Illumina [1671387] (imputed)	N
608	chr4	3135952	3135953	rs363066	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.3	HTT	rs363066-G	0.301937	2E-24		0.025991485	[0.021-0.031] unit increase	Affymetrix [93095623] (imputed)	N
608	chr4	3135952	3135953	rs363066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs363066-T	0.706771	1E-33				Affymetrix, Illumina [17210439] (imputed)	N
608	chr4	3135952	3135953	rs363066	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p16.3	NR	rs363066-T	0.69869	5E-36		0.02632	[0.022-0.03] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
608	chr4	3137673	3137674	rs363075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.3	HTT	rs363075-A	0.062681	3E-10		0.02994987	[0.021-0.039] unit increase	Affymetrix [93095623] (imputed)	N
608	chr4	3139792	3139796	rs143164160	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p16.3		rs143164160-G	NR	5E-18		0.0209	[0.016-0.026] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
608	chr4	3140408	3140409	rs113928896	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p16.3	Intergenic	rs113928896-T	0.1248	2E-9	(MTAG)	0.015	[0.01-0.02] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
608	chr4	3145339	3145340	rs112683178	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs112683178-A	0.02439	2E-8	(LBP)	0.02506	NR unit increase	Illumina [1671387] (imputed)	N
609	chr4	3148275	3148276	rs6855981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4p16.3		rs6855981-G	0.62675	4E-10		0.025514	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
609	chr4	3148275	3148276	rs6855981	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4p16.3		rs6855981-G	0.62675	6E-10		0.0253609	[0.017-0.033] unit decrease	NR [11722792] (imputed)	N
609	chr4	3148275	3148276	rs6855981	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p16.3		rs6855981-?	NR	3E-18				NR [~ 8900000] (imputed)	N
609	chr4	3159718	3159719	rs4690010	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4p16.3		rs4690010-T	NR	2E-8		0.0135	[0.0088-0.0182] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
609	chr4	3166195	3166196	rs6828882	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Monobrow	69,284 European ancestry individuals	NA	4p16.3	HTT	rs6828882-?	NR	1E-22		0.059	[0.071-0.048] unit decrease	Illumina [12039491] (imputed)	N
609	chr4	3180020	3180021	rs363096	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Noncognitive aspects of educational attainment	510,795 European ancestry individuals	NA	4p16.3	NR	rs363096-T	0.408549	1E-12		0.05089182	[0.037-0.065] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
609	chr4	3180020	3180021	rs363096	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	HTT	rs363096-C	0.4312	1E-9		0.0124521665	[0.0084-0.0165] unit increase	Affymetrix [up to 18485882] (imputed)	N
609	chr4	3180020	3180021	rs363096	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p16.3		rs363096-?	NR	1E-10				NR [~ 8900000] (imputed)	N
609	chr4	3180020	3180021	rs363096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs363096-T	0.4245	6E-24		0.0143	[0.012-0.017] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
609	chr4	3180020	3180021	rs363096	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.3	Intergenic	rs363096-T	0.4245	8E-23	(MTAG)	0.013	[0.01-0.016] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
609	chr4	3186243	3186244	rs2298969	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	LDL cholesterol levels x short total sleep time interaction (2df test)	2,974 African American short sleepers, 365 Chinese ancestry short sleepers, 110 Asian ancestry short sleepers, at least 8,230 European ancestry short sleepers, 1,079 Hispanic/Latino short sleepers, 11,801 African American controls, 1,425 Chinese ancestry controls, 444 Asian ancestry controls, at least 31,097 European ancestry controls, 4,023 Hispanic/Latino controls	at least 214 African American short sleepers, 629 East Asian ancestry short sleepers, up to 6,761 European ancestry short sleepers, 2,473 Hispanic short sleepers, at least 913 African American controls, 2,504 East Asian ancestry controls, up to 26,764 European ancestry controls, 9,854 Hispanic controls	4p16.3	DOK7	rs2298969-?	NR	4E-9		0.6257	[0.31-0.94] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
609	chr4	3187362	3187363	rs112372148	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs112372148-A	0.02439	2E-8	(LBP)	0.02506	NR unit increase	Illumina [1671387] (imputed)	N
609	chr4	3192540	3192542	rs553060882	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs553060882-A	0.01742	2E-8	(AADAC)	0.03085	NR unit increase	Illumina [1671387] (imputed)	N
609	chr4	3196028	3196029	rs363092	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4p16.3	HTT	rs363092-A	0.4247	1E-10		0.0022	[0.0014-0.003] unit decrease	Affymetrix, Illumina [8834748] (imputed)	N
609	chr4	3207141	3207142	rs7685686	30718901	Howard DM	2019-02-04	Nat Neurosci	Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.	Depression	118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls	414,055 European ancestry cases, 892,299 European ancestry controls	4p16.3	NR	rs7685686-A	0.5753	6E-15		1.017	[1.013-1.022]	NR [8098588] (imputed)	N
609	chr4	3220300	3220301	rs35537543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p16.3	HTT	rs35537543-G	0.00287000000000004	4E-9		0.12902857	[0.086-0.172] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr4	3220300	3220301	rs35537543	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.3	HTT	rs35537543-G	0.00286799999999998	2E-20		0.20236482	[0.16-0.25] unit increase	Affymetrix [93095623] (imputed)	N
609	chr4	3224601	3224602	rs362275	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4p16.3	NR	rs362275-C	0.7	6E-9		0.011	[0.0071-0.0149] unit increase	Affymetrix [2446094] (imputed)	N
609	chr4	3224601	3224602	rs362275	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4p16.3	NR	rs362275-C	0.7	5E-8				Affymetrix [2446094] (imputed)	N
609	chr4	3224601	3224602	rs362275	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4p16.3	NR	rs362275-T	0.2979	2E-11		0.0128	[0.0091-0.0165] unit decrease	NR [~ 27400000] (imputed)	N
609	chr4	3225370	3225371	rs82334	34431594	Atkins JL	2021-08-25	Aging Cell	A genome-wide association study of the frailty index highlights brain pathways in ageing.	Frailty index	175,226 European ancestry individuals	NA	4p16.3	HTT	rs82334-A	0.6823	3E-10		0.0223	[0.015-0.029] unit increase	Affymetrix, Illumina [7666890] (imputed)	N
609	chr4	3230410	3230413	rs149109767	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	4p16.3	NR	rs149109767-AGAG		7E-6		0.1483	[0.084-0.213] SD units decrease	NR [10700000] (imputed)	N
609	chr4	3232256	3232257	rs3121419	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4p16.3	NA	rs3121419-T	0.2971	2E-11		0.0129	[0.0092-0.0166] unit decrease	NR [~ 27400000] (imputed)	N
609	chr4	3234979	3234980	rs362272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p16.3	NR	rs362272-A	NR	6E-12		0.0178	[0.013-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
609	chr4	3234979	3234980	rs362272	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4p16.3	NR	rs362272-A	NR	2E-10		0.0166	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
609	chr4	3234979	3234980	rs362272	27412988	Tise CG	2016-07-13	G3 (Bethesda)	From Genotype to Phenotype: Nonsense Variants in SLC13A1 Are Associated with Decreased Serum Sulfate and Increased Serum Aminotransferases.	Serum sulfate level	917 Old Order Amish (founder/genetic isolate) individuals	NA	4p16.3	HTT	rs362272-?	NR	3E-7		0.02	NR unit decrease	Affymetrix [NR]	N
609	chr4	3241412	3241413	rs2071703	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.3		rs2071703-C	0.32	3E-8		5.57	z score increase	Affymetrix [9061022] (imputed)	N
609	chr4	3241844	3241845	rs362307	33128006	Timmins IR	2020-10-30	Commun Biol	Genome-wide association study of self-reported walking pace suggests beneficial effects of brisk walking on health and survival.	Walking pace	450,967 European ancestry individuals	NA	4p16.3	HTT	rs362307-C	NR	1E-9		0.0145722	[0.0099-0.0193] unit increase	Affymetrix [10061374] (imputed)	N
609	chr4	3241844	3241845	rs362307	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p16.3	NR	rs362307-C	0.9249	4E-8		0.0499	[0.032-0.068] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
609	chr4	3241844	3241845	rs362307	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p16.3	NR	rs362307-C	0.9265	3E-8		0.048	[0.031-0.065] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
609	chr4	3241844	3241845	rs362307	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	HTT	rs362307-T	0.07469	2E-9		0.023529777	[0.016-0.031] unit decrease	Affymetrix [up to 18485882] (imputed)	N
609	chr4	3241844	3241845	rs362307	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4p16.3	NR	rs362307-T	0.07289	2E-9		0.028695542	[0.019-0.038] unit increase	Affymetrix [10549349] (imputed)	N
609	chr4	3241844	3241845	rs362307	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	4p16.3	HTT	rs362307-C	NR	1E-9		0.0080611	[0.0054-0.0107] unit decrease	Affymetrix [18485882] (imputed)	N
609	chr4	3241844	3241845	rs362307	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Automobile speeding propensity	404,291 European ancestry individuals	NA	4p16.3	MSANTD1	rs362307-T	0.0752	6E-14		0.03203624	[0.024-0.04] unit decrease	Affymetrix [11514463] (imputed)	N
609	chr4	3241844	3241845	rs362307	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.3	HTT	rs362307-T	0.0768	1E-9		1.08	[1.05-1.10]	Affymetrix, Illumina [~ 27000000] (imputed)	N
609	chr4	3241844	3241845	rs362307	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs362307-T	0.0772	2E-17		0.0226	[0.017-0.028] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
609	chr4	3241844	3241845	rs362307	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.3	NR	rs362307-?	NR	5E-7		5.016	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
609	chr4	3241844	3241845	rs362307	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	4p16.3	HTT	rs362307-T	0.0721923	9E-10		6.13	z score decrease	NR [10847151] (imputed)	N
609	chr4	3247006	3247007	rs362296	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	4p16.3	NR	rs362296-?	NR	4E-6		0.02414	[0.014-0.034] unit decrease	Affymetrix [9658292] (imputed)	N
609	chr4	3247122	3247123	rs73074853	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs73074853-A	0.01045	2E-9	(AGRN)	0.02215	NR unit increase	Illumina [1671387] (imputed)	N
609	chr4	3249827	3249828	rs12646808	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Problematic alcohol use (MTAG)	972,915 European ancestry individuals	NA	4p16.3	NR	rs12646808-C	0.3448	5E-8		0.014283394	[0.0092-0.0194] unit decrease	Affymetrix [10613246] (imputed)	N
609	chr4	3249827	3249828	rs12646808	32451486	Zhou H	2020-05-25	Nat Neurosci	Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits.	Alcohol consumption (drinks per week) (MTAG)	972,915 European ancestry individuals	NA	4p16.3	NR	rs12646808-C	0.338	1E-8		0.011208944	[0.0074-0.015] unit decrease	Affymetrix [NR] (imputed)	N
609	chr4	3249827	3249828	rs12646808	31358974	Evangelou E	2019-07-29	Nat Hum Behav	New alcohol-related genes suggest shared genetic mechanisms with neuropsychiatric disorders.	Alcohol consumption	480,842 European ancestry individuals	NA	4p16.3	MSANTD1, HTT	rs12646808-T	0.66	2E-9		0.007	[0.005-0.009] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
609	chr4	3249827	3249828	rs12646808	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4p16.3	NR	rs12646808-T	0.6575	4E-10		0.014958043	NR unit increase	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
609	chr4	3252129	3252130	rs34155847	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	MSANTD1	rs34155847-A	0.2437	1E-8		0.013430056	[0.0088-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
609	chr4	3252129	3252130	rs34155847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs34155847-A	0.2483	1E-16		0.0135	[0.01-0.017] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
609	chr4	3252129	3252130	rs34155847	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p16.3	Intergenic	rs34155847-A	0.2467	1E-9	(MTAG)	0.0162	[0.011-0.021] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
609	chr4	3253182	3253183	rs3095075	34743297	Kulminski AM	2021-11-06	Geroscience	Pleiotropic predisposition to Alzheimer's disease and educational attainment: insights from the summary statistics analysis.	Alzheimer's disease or educational attainment (pleiotropy)	(see Lambert 2013 and Okbay 2016)	NA	4p16.3		rs3095075-A	0.5504	6E-7		34.331844	z score increase	NR [6814003]	N
609	chr4	3253182	3253183	rs3095075	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p16.3	MSANTD1	rs3095075-G	0.444262	2E-9		0.0138409175	[0.0094-0.0183] unit decrease	Affymetrix [93095623] (imputed)	N
609	chr4	3253182	3253183	rs3095075	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	MSANTD1	rs3095075-G	0.4412	6E-12		0.01397274	[0.01-0.018] unit increase	Affymetrix [up to 18485882] (imputed)	N
609	chr4	3253182	3253183	rs3095075	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4p16.3	MSANTD1	rs3095075-?	NR	1E-8		0.011685019	[0.0077-0.0157] unit decrease	NR [7306098]	N
609	chr4	3256804	3256805	rs3135174	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4p16.3	NR	rs3135174-?	NR	6E-7		0.03822	[0.023-0.053] unit decrease	Affymetrix [9658292] (imputed)	N
609	chr4	3258320	3258321	rs362285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs362285-A	NR	3E-16		0.0798	[0.061-0.099] unit increase	Affymetrix [9000000] (imputed)	N
609	chr4	3258320	3258321	rs362285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs362285-A	NR	1E-10		0.0622	[0.043-0.081] unit increase	Affymetrix [9000000] (imputed)	N
609	chr4	3258320	3258321	rs362285	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4p16.3	NR	rs362285-A	NR	2E-10		0.0591	[0.041-0.077] unit decrease	Affymetrix [9000000] (imputed)	N
609	chr4	3266859	3266860	rs2108753	31844048	Hill WD	2019-12-16	Nat Commun	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.	Household income (MTAG)	505,541 British and unknown ancestry individuals	NA	4p16.3	MSANTD1	rs2108753-T	0.4264	3E-8		0.011225189	[0.0072-0.0152] unit increase	Affymetrix [up to 18485882] (imputed)	N
609	chr4	3267667	3267668	rs2798224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4p16.3		rs2798224-?	NR	3E-10				NR [~ 8900000] (imputed)	N
609	chr4	3268709	3268710	rs2858088	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Alcohol consumption (drinks per week)	414,343 European ancestry individuals	NA	4p16.3	MSANTD1	rs2858088-A	0.3813	5E-10		0.01425575	[0.0098-0.0188] unit decrease	Affymetrix [11514936] (imputed)	N
609	chr4	3268911	3268912	rs76499077	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs76499077-G	NR	7E-10		0.0708	[0.048-0.093] unit decrease	Affymetrix [9000000] (imputed)	N
609	chr4	3276490	3276491	rs10937921	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p16.3	Intergenic	rs10937921-T	0.3482	1E-12	(MTAG)	0.0123	[0.009-0.0156] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
610	chr4	3281511	3281512	rs199500642	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p16.3		rs199500642-C	NR	7E-13		0.0252	[0.018-0.032] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
610	chr4	3284750	3284751	rs6446731	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4p16.3	intergenic	rs6446731-A	0.2843	2E-14		0.03076952	[0.023-0.039] unit decrease	Affymetrix [~ 2500000] (imputed)	N
610	chr4	3285388	3285389	rs3135064	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls	NA	4p16.3	RGS12	rs3135064-T	0.450203	1E-9		0.03444418	[0.023-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
610	chr4	3285805	3285806	rs73193344	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs73193344-T	NR	4E-10		0.037	[0.025-0.049] unit increase	Affymetrix [9000000] (imputed)	N
610	chr4	3287051	3287052	rs3135063	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p16.3	RGS12	rs3135063-A	0.3791374	7E-12	(EA, Hepatocyte growth factor activator)	0.3098	[0.22-0.4] unit decrease	Affymetrix [509946]	N
610	chr4	3287654	3287655	rs3129317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	4p16.3	NR	rs3129317-G	NR	1E-10		0.0161	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
610	chr4	3287654	3287655	rs3129317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Alanine aminotransferase levels	342,387 European ancestry individuals, 6,017 African ancestry individuals, 7,325 South Asian ancestry individuals	NA	4p16.3	NR	rs3129317-G	NR	4E-14		0.019	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
610	chr4	3298799	3298800	rs2051559	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p16.3	RGS12	rs2051559-T	0.867546	8E-12		0.0138644	[0.0099-0.0178] unit decrease	Affymetrix [12370749]	N
610	chr4	3298799	3298800	rs2051559	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p16.3	NR	rs2051559-?	NR	6E-11				Affymetrix [~ 8270000] (imputed)	N
610	chr4	3298799	3298800	rs2051559	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p16.3		rs2051559-?	NR	1E-11				NR [~ 8900000] (imputed)	N
610	chr4	3298799	3298800	rs2051559	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p16.3	NA	rs2051559-T	0.8588	4E-11		0.0167	[0.012-0.022] unit decrease	NR [~ 27400000] (imputed)	N
610	chr4	3305738	3305739	rs2239725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs2239725-C	0.404798	1E-9		0.0240145	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
610	chr4	3305738	3305739	rs2239725	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs2239725-C	0.404798	2E-10		0.025262	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
610	chr4	3311069	3311070	rs66852340	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4p16.3	NR	rs66852340-?		8E-12		0.0177896	[0.013-0.023] unit decrease	Affymetrix [19400418] (imputed)	N
610	chr4	3339037	3339038	rs7668784	31484785	Wright KM	2019-09-04	G3 (Bethesda)	A Prospective Analysis of Genetic Variants Associated with Human Lifespan.	Parental longevity (mother's age at death or mother's attained age)	up to 699,000 individuals	NA	4p16.3	NR	rs7668784-C		7E-7				Illumina [458525]	N
610	chr4	3364529	3364530	rs60208975	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs60208975-A	0.407908	6E-9		0.0232812	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
610	chr4	3365380	3365381	rs881817	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in very large VLDL	114,160 European ancestry individuals	NA	4p16.3		rs881817-A	0.406354	8E-10		0.0250865	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
610	chr4	3369499	3369500	rs10155132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4p16.3		rs10155132-G	NR	1E-10		0.0324	[0.023-0.042] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
610	chr4	3369499	3369500	rs10155132	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4p16.3	RGS12	rs10155132-A	0.39295	3E-8		0.034312643	[0.022-0.046] unit decrease	Affymetrix [7288503] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of polyunsaturated fatty acids to monounsaturated fatty acids	115,006 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408584	1E-9		0.0246006	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	1E-8		0.0215712	[0.014-0.029] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	2E-9		0.0240106	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	1E-10		0.0242587	[0.017-0.032] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	3E-8		0.0206211	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	2E-10		0.0251261	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	4E-11		0.0251102	[0.018-0.033] unit increase	NR [11722792] (imputed)	N
610	chr4	3374897	3374898	rs10937924	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs10937924-T	0.408483	4E-8		0.0204228	[0.013-0.028] unit increase	NR [11722792] (imputed)	N
610	chr4	3389810	3389811	rs6828057	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4p16.3	RGS12	rs6828057-?	NR	5E-11		0.02887	[0.02-0.037] unit increase novel	Illumina [6108953] (imputed)	N
610	chr4	3406951	3406952	rs1203119	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p16.3	RGS12	rs1203119-A	0.08241206	1E-35	(EA, Hepatocyte growth factor activator)	0.9854	[0.84-1.13] unit decrease	Affymetrix [509946]	N
611	chr4	3414653	3414654	rs10027926	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Worry too long after an embarrassing experience	367,725 European ancestry individuals	NA	4p16.3	RGS12	rs10027926-A	0.101532	3E-8		5.56	z score decrease	NR [10847151] (imputed)	N
611	chr4	3417483	3417484	rs3213506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs3213506-A	NR	8E-15		0.0217	[0.016-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3417483	3417484	rs3213506	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs3213506-A	NR	7E-10		0.0172	[0.012-0.023] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3419839	3419840	rs12641989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p16.3	NR	rs12641989-A	NR	4E-11		0.0258	[0.018-0.033] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3419839	3419840	rs12641989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs12641989-A	NR	8E-14		0.0306	[0.023-0.039] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3420745	3420746	rs34799306	28199695	Jones AV	2017-04-01	Hum Mol Genet	GWAS of self-reported mosquito bite size, itch intensity and attractiveness to mosquitoes implicates immune-related predisposition loci.	Itch intensity from mosquito bite adjusted by bite size	69,057 European ancestry individuals without immune related conditions	NA	4p16.3	RGS12	rs34799306-C	NR	8E-6		0.0382571	[0.021-0.055] unit increase	Illumina [13519193] (imputed)	N
611	chr4	3421308	3421309	rs4690095	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	4p16.3		rs4690095-T	0.46668	2E-11		0.0191087	[0.014-0.025] unit increase	Illumina [13478778] (imputed)	N
611	chr4	3421308	3421309	rs4690095	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	4p16.3	RGS12, HGFAC	rs4690095-C	0.5767	4E-11		6.621	NR z score increase	Illumina [26237160] (imputed)	N
611	chr4	3421308	3421309	rs4690095	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum albumin levels	102,223 Japanese ancestry individuals	NA	4p16.3	RGS12	rs4690095-?	NR	2E-22		0.04364	[0.035-0.052] unit decrease	Illumina [6108953] (imputed)	N
611	chr4	3421308	3421309	rs4690095	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Glomerular filtration rate	143,658 Japanese ancestry individuals	NA	4p16.3	RGS12	rs4690095-?	NR	2E-9		0.02268	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3421308	3421309	rs4690095	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Creatinine levels	142,097 Japanese ancestry individuals	NA	4p16.3	RGS12	rs4690095-?	NR	9E-11		0.02386	[0.017-0.031] unit increase novel	Illumina [6108953] (imputed)	N
611	chr4	3425029	3425030	rs58143210	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Total cholesterol levels	128,305 Japanese ancestry individuals	NA	4p16.3	RGS12	rs58143210-?	NR	3E-8		0.02242	[0.015-0.03] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3429855	3429856	rs2269497	29036319	Qi H	2017-09-26	Hum Mol Genet	Discovery of susceptibility loci associated with tuberculosis in Han Chinese.	Tuberculosis	972 Chinese ancestry cases, 1,537 Chinese ancestry controls	3,338 Chinese ancestry cases, 4,849 Chinese ancestry controls	4p16.3	MSANTD1, RGS12, HGF, ACDOK7, LRPAP1, LINC00955, HTT	rs2269497-?	0.056	3E-8		1.51	[1.35-1.68]	Illumina [691388]	N
611	chr4	3432318	3432319	rs142339779	33542107	Wan X	2021-02-04	J Am Soc Nephrol	Heterozygosity for a Pathogenic Variant in <i>SLC12A3</i> That Causes Autosomal Recessive Gitelman Syndrome Is Associated with Lower Serum Potassium.	Potassium levels	5,812 Old Order Amish (founder/genetic isolate) individuals	NA	4p16.3		rs142339779-?	NR	5E-6		0.4919	mmol/L increase	Illumina [NR]	N
611	chr4	3434884	3434885	rs6818397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	120,539 East Asian ancestry individuals	NA	4p16.3		rs6818397-G	0.461836	2E-23		0.0373786	[0.03-0.045] unit decrease	Illumina [13474682] (imputed)	N
611	chr4	3434884	3434885	rs6818397	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	83,980 East Asian ancestry individuals	NA	4p16.3		rs6818397-G	0.462265	1E-15		0.0378458	[0.029-0.047] unit decrease	Illumina [13468899] (imputed)	N
611	chr4	3434884	3434885	rs6818397	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	4p16.3	NR	rs6818397-T	NR	5E-8				Affymetrix [723305]	N
611	chr4	3434884	3434885	rs6818397	31564439	Fang H	2019-09-26	Am J Hum Genet	Harmonizing Genetic Ancestry and Self-identified Race/Ethnicity in Genome-wide Association Studies.	Height	up to 248,507 non-Hispanic white individuals, up to 68,155 non-Hispanic black individuals, up to 25,847 Hispanic individuals, up to 3,054 Asian ancestry individuals	NA	4p16.3	NR	rs6818397-T	NR	1E-10	(EA)	0.05	NR unit decrease	Affymetrix [723305]	N
611	chr4	3434884	3434885	rs6818397	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Total cholesterol levels	32,576 East Asian ancestry individuals, 187,365 European ancestry individuals	10,855 Chinese ancestry individuals	4p16.3	LRPAP1	rs6818397-T	0.413	1E-11	(Trans-ethnic initial)	0.0254	[0.018-0.033] unit increase (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
611	chr4	3434884	3434885	rs6818397	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	LDL cholesterol levels	32,285 East Asian ancestry individuals, 173,082 European ancestry individuals	8,478 Chinese ancestry individuals	4p16.3	LRPAP1	rs6818397-T	0.413	3E-9	(Trans-ethnic initial)	0.0224	[0.015-0.03] unit increase (EA Beta value)	Affymetrix, Illumina [~ 1900000] (imputed)	N
611	chr4	3436061	3436062	rs4690014	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGFAC	5,366 Icelandic ancestry individuals	NA	4p16.3		rs4690014-A	0.4395	3E-60		0.306129	[0.27-0.34] unit increase	Illumina [7506463] (imputed)	N
611	chr4	3436061	3436062	rs4690014	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGFAC	5,362 Icelandic ancestry individuals	NA	4p16.3		rs4690014-A	0.4395	3E-83		0.349445	[0.31-0.38] unit increase	Illumina [7506463] (imputed)	N
611	chr4	3436587	3436588	rs13116176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	133,321 East Asian ancestry individuals	NA	4p16.3		rs13116176-A	0.380603	1E-14		0.0297483	[0.022-0.037] unit decrease	Illumina [13477433] (imputed)	N
611	chr4	3436587	3436588	rs13116176	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4p16.3		rs13116176-A	0.380639573	7E-12		0.0651869	[0.047-0.084] unit decrease	Illumina [13429980] (imputed)	N
611	chr4	3436587	3436588	rs13116176	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Total cholesterol levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4p16.3	RGS12	rs13116176-?		2E-11		0.0237	[0.017-0.031] unit increase	Illumina [31500000] (imputed)	N
611	chr4	3438642	3438643	rs16844364	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	4p16.3	RGS12	rs16844364-?	NR	2E-9		29.7	[20.1-39.3] unit increase	Illumina [377173]	N
611	chr4	3442258	3442259	rs73193400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p16.3	NR	rs73193400-A	NR	2E-13		0.0224	[0.017-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3442258	3442259	rs73193400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p16.3	NR	rs73193400-A	NR	2E-9		0.0184	[0.013-0.024] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3442258	3442259	rs73193400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs73193400-A	NR	3E-11		0.0213	[0.015-0.028] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3442258	3442259	rs73193400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs73193400-A	NR	7E-10		0.0197	[0.013-0.026] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3442258	3442259	rs73193400	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4p16.3	NR	rs73193400-A	NR	2E-10		0.0194	[0.013-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	VLDL cholesterol levels	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-10		0.0275401	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-13		0.0293246	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384637	5E-20		0.0367559	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-8		0.0227528	[0.015-0.031] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-12		0.0280524	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	9E-13		0.0297479	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-16		0.0332432	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-23		0.0411193	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-18		0.0365417	[0.028-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-17		0.03514	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-23		0.0409333	[0.033-0.049] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	7E-17		0.0348101	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-10		0.0267374	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-18		0.0361582	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-10		0.0260462	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-9		0.0246844	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-19		0.0369901	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	8E-13		0.0299675	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-11		0.0283857	[0.02-0.037] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-19		0.0367848	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-16		0.0336918	[0.026-0.042] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-11		0.0256029	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	9E-19		0.0372804	[0.029-0.046] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-10		0.0270612	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-19		0.0381968	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-17		0.0361707	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-13		0.0314943	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in lipoprotein particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-11		0.0279818	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	7E-19		0.0366147	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-11		0.0273969	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-17		0.0350599	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-9		0.0249713	[0.017-0.033] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total fatty acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	6E-17		0.0352937	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Saturated fatty acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	4E-11		0.0277641	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	1E-13		0.0293474	[0.022-0.037] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of monounsaturated fatty acids to total fatty acids	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	9E-14		0.0305164	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Polyunsaturated fatty acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	8E-17		0.03457	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in very large HDL	115,056 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384637	1E-15		0.031498	[0.024-0.039] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-18		0.0372692	[0.029-0.046] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384634	6E-9		0.0241345	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in chylomicrons and extremely large VLDL	111,638 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384853	2E-8		0.0239198	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-15		0.0330242	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-12		0.0273891	[0.02-0.035] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-14		0.0325352	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-16		0.0345987	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-13		0.0311575	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	9E-13		0.0305696	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-18		0.0359219	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-13		0.029601	[0.022-0.038] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-15		0.0330339	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Omega-6 fatty acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	4E-17		0.035128	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Monounsaturated fatty acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	2E-19		0.0379084	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Linoleic acid levels	115,006 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384592	1E-14		0.0324352	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Glycoprotein acetyls levels	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-20		0.0387648	[0.03-0.047] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-11		0.0269589	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-11		0.0273666	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol to total lipids ratio in large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-12		0.0280917	[0.02-0.036] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-15		0.0331868	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in very large HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-14		0.0305107	[0.023-0.038] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-10		0.0270402	[0.019-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-15		0.0334438	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-10		0.0275152	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	6E-19		0.0366775	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-14		0.0311763	[0.023-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-14		0.0319673	[0.024-0.04] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of very large VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-17		0.0347752	[0.027-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-19		0.0378499	[0.03-0.046] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small LDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-8		0.0240021	[0.016-0.032] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of small HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-20		0.0399268	[0.032-0.048] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-15		0.0333045	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of medium LDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-9		0.0259783	[0.018-0.034] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-19		0.0371389	[0.029-0.045] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of chylomicrons and extremely large VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	8E-13		0.0294061	[0.021-0.037] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-13		0.0312478	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-11		0.026648	[0.019-0.035] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-15		0.0341345	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-11		0.0263689	[0.019-0.034] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	7E-10		0.0261874	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in large LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-13		0.0314349	[0.023-0.04] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-15		0.0331107	[0.025-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	5E-11		0.028021	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	9E-13		0.0305611	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-16		0.0351305	[0.027-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-14		0.0327221	[0.024-0.041] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-16		0.0346243	[0.026-0.043] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-12		0.029435	[0.021-0.038] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	4E-8		0.0235594	[0.015-0.032] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-10		0.0268309	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in very small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-10		0.0259139	[0.018-0.034] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in very large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	8E-16		0.0335772	[0.025-0.042] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	6E-11		0.0279049	[0.02-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-10		0.0274296	[0.019-0.036] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in small HDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	3E-17		0.0361144	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-12		0.0305423	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	6E-18		0.0360697	[0.028-0.044] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	1E-13		0.0305252	[0.022-0.039] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	6E-22		0.0384075	[0.031-0.046] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for HDL particles	115,082 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384645	2E-11		0.0254296	[0.018-0.033] unit decrease	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Albumin levels	115,064 European ancestry individuals	NA	4p16.3		rs13108218-A	0.384642	4E-10		0.0266094	[0.018-0.035] unit increase	NR [11722792] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	4E-53		0.0318	[0.028-0.036] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Total cholesterol levels	344,278 European ancestry individuals, 135,808 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	8E-25		0.0206	[0.017-0.025] unit decrease	Affymetrix, Illumina [20536134] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	7E-50		0.0319	[0.028-0.036] unit decrease	Affymetrix, Illumina [20536782] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	1E-16		0.0137	[0.011-0.017] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	3E-84		0.0412	[0.037-0.045] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (HMG CoA reductase inhibitors)	73,475 European ancestry cases, 216,910 European ancestry controls, 33,295 East Asian ancestry cases, 145,431 East Asian ancestry controls	NA	4p16.3		rs13108218-G	NR	5E-17		0.0416	[0.032-0.051] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	4E-40		0.0255	[0.022-0.029] unit decrease	Affymetrix, Illumina [20535691] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	2E-67		0.0393	[0.035-0.044] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	2E-11		0.0131	[0.0092-0.017] unit decrease	Affymetrix, Illumina [20538469] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4p16.3		rs13108218-G	NR	1E-17		0.0165	[0.013-0.02] unit decrease	Affymetrix, Illumina [20538387] (imputed)	N
611	chr4	3443930	3443931	rs13108218	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4p16.3		rs13108218-A	0.383	2E-12				Affymetrix [10369434] (imputed)	N
611	chr4	3443930	3443931	rs13108218	33972514	Pazoki R	2021-05-10	Nat Commun	Genetic analysis in European ancestry individuals identifies 517 loci associated with liver enzymes.	Liver enzyme levels (gamma-glutamyl transferase)	437,194 European ancestry individuals	315,572 European ancestry individuals	4p16.3	HGFAC	rs13108218-A	0.384502	1E-32		0.0063266	[0.0053-0.0074] unit increase	Affymetrix [13995440] (imputed)	N
611	chr4	3443930	3443931	rs13108218	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4p16.3	NR	rs13108218-G	0.6157	3E-51		0.003487	[0.003-0.0039] unit decrease	Affymetrix [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4p16.3	HGFAC	rs13108218-A	0.38	4E-8		5.51	z-score increase	Affymetrix [4314223] (imputed)	N
611	chr4	3443930	3443931	rs13108218	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4p16.3	HGFAC	rs13108218-A	0.38	3E-12		6.99	z-score increase	Affymetrix [4312306] (imputed)	N
611	chr4	3443930	3443931	rs13108218	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Triglyceride levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4p16.3	HGFAC	rs13108218-?		3E-18		0.0326	[0.025-0.04] unit decrease	Illumina [31500000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4p16.3	HGFAC	rs13108218-G	0.615709	8E-15		0.018173108	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4p16.3	NR	rs13108218-A	0.384571	1E-43		0.0275204	[0.024-0.031] unit increase	Affymetrix [15000001]	N
611	chr4	3443930	3443931	rs13108218	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p16.3	HGFAC	rs13108218-A	0.38514	8E-50		0.0305943	[0.027-0.035] unit increase	Affymetrix [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4p16.3	HGFAC	rs13108218-A	0.385133	2E-16		0.0177573	[0.014-0.022] unit increase	Affymetrix [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4p16.3	HGFAC	rs13108218-A	0.38515	2E-26		0.0228809	[0.019-0.027] unit increase	Affymetrix [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4p16.3	HGFAC	rs13108218-A	0.385086	6E-11		0.0132813	[0.0093-0.0173] unit increase	Affymetrix [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4p16.3	HGFAC	rs13108218-?	NR	7E-31		0.0314	[0.027-0.036] unit increase	Affymetrix [5701386] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Low density lipoprotein cholesterol levels	324,708 British ancestry individuals	NA	4p16.3	HGFAC	rs13108218-?	NR	2E-26		0.0283	[0.024-0.033] unit increase	Affymetrix [5701386] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4p16.3	NR	rs13108218-A	0.383168	2E-29		0.0348455	[0.029-0.041] unit increase	Affymetrix [16577313] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p16.3	NR	rs13108218-A	0.382812	3E-172		0.0235093	[0.022-0.025] unit increase	Affymetrix [16582909] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p16.3	NR	rs13108218-A	0.382898	1E-83		0.0235214	[0.021-0.026] unit increase	Affymetrix [16585854] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4p16.3	NR	rs13108218-A	0.382709	4E-96		0.0234327	[0.021-0.026] unit increase	Affymetrix [16582621] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p16.3	NR	rs13108218-A	0.382812	9E-129		0.0228387	[0.021-0.025] unit increase	Affymetrix [16582965] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p16.3	NR	rs13108218-A	0.382898	2E-55		0.0224735	[0.02-0.025] unit increase	Affymetrix [16585866] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4p16.3	NR	rs13108218-A	0.382709	1E-79		0.0229943	[0.02-0.025] unit increase	Affymetrix [16582614] (imputed)	N
611	chr4	3443930	3443931	rs13108218	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4p16.3	NR	rs13108218-G	0.6170720000000001	2E-17		0.0176657	[0.014-0.022] unit increase	Affymetrix [16583148] (imputed)	N
611	chr4	3443930	3443931	rs13108218	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4p16.3	NR	rs13108218-A	0.381919	4E-10		0.0130776	[0.009-0.0172] unit decrease	NR [NR]	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	HGFAC	rs13108218-G	NR	8E-29				Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	HGFAC	rs13108218-G	NR	6E-15	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	HGFAC	rs13108218-G	NR	2E-17	(EA)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	HGFAC	rs13108218-G	NR	8E-19	(EA)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	HGFAC	rs13108218-G	NR	5E-28				Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	HGFAC	rs13108218-G	NR	2E-12	(Asian)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	8E-12	(Asian)	0.02	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	1E-18		0.017	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	1E-12	(EA)	0.02	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	5E-8	(EA)	0.021	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	3E-10	(Asian)	0.016	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels	89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals	136,986 European ancestry individuals, 4,475 African American or Afro-Caribbean individuals, 108,431 Asian ancestry individuals, 13,714 Hispanic individuals, 3,652 Brazilian ancestry individuals	4p16.3	HGFAC	rs13108218-G	NR	2E-14		0.015	NR unit increase	Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	HGFAC	rs13108218-G	NR	6E-9				Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p16.3	HGFAC	rs13108218-G	NR	4E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	HGFAC	rs13108218-G	NR	8E-10				Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p16.3	HGFAC	rs13108218-G	NR	4E-9	(EA)			Affymetrix, Illumina [NR] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30670697	Kilpelainen TO	2019-01-22	Nat Commun	Multi-ancestry study of blood lipid levels identifies four loci interacting with physical activity.	Triglycerides x physical activity interaction (2df test)	7,294 African American inactive individuals, 12,832 African American active individuals, 1,352 Asian ancestry inactive individuals, 3,049 Asian ancestry active individuals, 20,622 European ancestry inactive individuals, 51,480 European ancestry active individuals, 2,166 Hispanic or Latin American inactive individuals, 3,486 Hispanic or Latin American active individuals	580 African American inactive individuals, 1,540 African American active individuals, 1,217 South African Black ancestry inactive individuals, 389 South African Black ancestry active individuals, 765 East Asian ancestry inactive individuals, 1,814 East Asian ancestry active individuals,  724 South Asian ancestry inactive individuals, 1,424 South Asian ancestry active individuals, 32,456 European ancestry inactive individuals, 49,510 European ancestry active individuals, 2,619 Hispanic inactive individuals, 8,803 Hispanic active individuals	4p16.3	NR	rs13108218-A	0.3852	3E-16	(EA)			Affymetrix, Illumina [at least 2500000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30604766	Morris AP	2019-01-03	Nat Commun	Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.	Estimated glomerular filtration rate	134,070 European ancestry individuals, 143,658 East Asian ancestry individuals, 26,344 Hispanic or Latino ancestry individuals, 8,224 African American individuals	NA	4p16.3	RGS12	rs13108218-G	0.526	1E-8		0.389	[0.2-0.58] ml/min/1.73m2 decrease	Affymetrix, Illumina [at least 5248638] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p16.3		rs13108218-?	NR	4E-9				NR [~ 8900000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.3		rs13108218-?	NR	3E-37				NR [~ 8900000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4p16.3		rs13108218-?	NR	8E-12				NR [~ 8900000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Triglycerides	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p16.3	HGFAC	rs13108218-A	0.4233	1E-16		0.0234	[0.018-0.029] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
611	chr4	3443930	3443931	rs13108218	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	4p16.3	HGFAC	rs13108218-G	0.602750595080666	5E-15		0.01349164	unit increase	NR [9276018] (imputed)	N
611	chr4	3443930	3443931	rs13108218	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4p16.3	HGFAC	rs13108218-G	0.6159	3E-9		0.0226498	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
611	chr4	3444502	3444503	rs2073505	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p16.3	HGFAC	rs2073505-A	0.07545	1E-7	(EA)	1.0996872	[1.06-1.14]	Affymetrix, Illumina [~ 9000000] (imputed)	N
611	chr4	3444502	3444503	rs2073505	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p16.3	HGFAC	rs2073505-A	0.07545	9E-7	(EA)	1.1113101	[1.07-1.15]	Affymetrix, Illumina [~ 9000000] (imputed)	N
611	chr4	3445609	3445610	rs6853599	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.3		rs6853599-T	0.1787	6E-9		0.0108	[0.0071-0.0145] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
611	chr4	3445609	3445610	rs6853599	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.3	Intergenic	rs6853599-T	0.1787	3E-9	(MTAG)	0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
611	chr4	3445768	3445784	rs562047823	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Sex hormone-binding globulin levels	397,043 European ancestry individuals	NA	4p16.3		rs562047823-?	NR	8E-14		0.217087	[0.15-0.28] unit increase	NR [9800000] (imputed)	N
611	chr4	3446090	3446091	rs3748034	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4p16.3	NR	rs3748034-T	0.143	4E-9		0.0112741	[0.0075-0.015] unit decrease	NR [~ 9732723] (imputed)	N
611	chr4	3446090	3446091	rs3748034	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week)	up to 941,280 European ancestry individuals	NA	4p16.3	NR	rs3748034-T	0.143	2E-8		0.011740341	[0.0077-0.0158] unit decrease	NR [~ 10000000] (imputed)	N
611	chr4	3446090	3446091	rs3748034	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Hepatocyte growth factor levels	8,292 Finnish ancestry individuals	NA	4p16.3	HGFAC	rs3748034-G		2E-10		0.1495	[0.1-0.2] SD units decrease	NR [10700000] (imputed)	N
611	chr4	3446753	3446754	rs3752440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGFAC	5,366 Icelandic ancestry individuals	NA	4p16.3		rs3752440-A	0.06135	4E-73		0.695902	[0.62-0.77] unit decrease	Illumina [7506463] (imputed)	N
611	chr4	3446753	3446754	rs3752440	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein HGFAC	5,362 Icelandic ancestry individuals	NA	4p16.3		rs3752440-A	0.06135	7E-97		0.776247	[0.7-0.85] unit decrease	Illumina [7506463] (imputed)	N
611	chr4	3446882	3446883	rs3752442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	133,471 East Asian ancestry individuals	NA	4p16.3		rs3752442-G	0.431498	1E-10		0.0224854	[0.016-0.029] unit decrease	Illumina [13476165] (imputed)	N
611	chr4	3446882	3446883	rs3752442	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4p16.3		rs3752442-G	NR	2E-11		0.0163	[0.012-0.021] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
611	chr4	3446882	3446883	rs3752442	33339817	Nielsen JB	2020-12-18	Nat Commun	Loss-of-function genomic variants highlight potential therapeutic targets for cardiovascular disease.	Gamma glutamyl transferase levels	76,081 European ancestry individuals, 127,395 Japanese ancestry individuals	NA	4p16.3	HGFAC	rs3752442-?		2E-10		0.026	[0.018-0.034] unit decrease	Illumina [31500000] (imputed)	N
611	chr4	3446882	3446883	rs3752442	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p16.3	HGFAC	rs3752442-G	0.251107	2E-10		0.016688986	[0.012-0.022] unit increase	Affymetrix [93095623] (imputed)	N
611	chr4	3446882	3446883	rs3752442	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Triglyceride levels	105,597 Japanese ancestry individuals	NA	4p16.3	HGFAC	rs3752442-?	NR	1E-14		0.03353	[0.025-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3446882	3446883	rs3752442	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Gamma glutamyl transferase levels	118,309 Japanese ancestry individuals	NA	4p16.3	HGFAC	rs3752442-?	NR	2E-10		0.0264	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3447155	3447156	rs4690098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	111,667 East Asian ancestry individuals	NA	4p16.3		rs4690098-T	0.418081	1E-15		0.0324384	[0.025-0.04] unit decrease	Illumina [13471903] (imputed)	N
611	chr4	3447155	3447156	rs4690098	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p16.3		rs4690098-T	NR	2E-29		0.0241	[0.02-0.028] unit decrease	Affymetrix, Illumina [20538505] (imputed)	N
611	chr4	3447155	3447156	rs4690098	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p16.3	HGFAC	rs4690098-T	0.234276	2E-18		0.023703862	[0.018-0.029] unit decrease	Affymetrix [93095623] (imputed)	N
611	chr4	3447155	3447156	rs4690098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.3	NR	rs4690098-T	0.27072	1E-30				Affymetrix, Illumina [24588908] (imputed)	N
611	chr4	3447155	3447156	rs4690098	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p16.3	NR	rs4690098-T	0.234148	7E-23		0.023078	[0.018-0.028] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
611	chr4	3447155	3447156	rs4690098	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4p16.3	NR	rs4690098-T	0.23533700000000002	4E-18		0.0266003	[0.021-0.033] unit increase	Affymetrix [16585745] (imputed)	N
611	chr4	3447155	3447156	rs4690098	25998175	Larson NB	2015-05-22	Ann Hum Genet	Trans-ethnic meta-analysis identifies common and rare variants associated with hepatocyte growth factor levels in the Multi-Ethnic Study of Atherosclerosis (MESA).	Hepatocyte growth factor levels	1,550 African American individuals, 762 Chinese ancestry individuals, 2,477 European ancestry individuals, 1,412 Hispanic individuals	NA	4p16.3	HGFAC	rs4690098-?	NR	3E-8		28.8	[18.61-38.99] unit decrease	Illumina [377173]	N
611	chr4	3447310	3447311	rs6813378	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	4p16.3		rs6813378-T	0.02618	2E-6		1.843	[1.436-2.365]	Affymetrix [7975321] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	1E-11		0.0327	[0.023-0.042] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	3E-14		0.0364	[0.027-0.046] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	4E-44		0.0703	[0.06-0.08] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	2E-16		0.0413	[0.031-0.051] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	3E-30		0.0574	[0.048-0.067] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	8E-11		0.0313	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Gamma glutamyl transferase levels	342,339 European ancestry individuals, 6,015 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	5E-11		0.0316	[0.022-0.041] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	2E-23		0.0501	[0.04-0.06] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4p16.3	NR	rs16844401-A	NR	4E-15		0.0378	[0.028-0.047] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3449651	3449652	rs16844401	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	88,192 cases, 162,544 controls	34,541 cases, 261,984 controls	4p16.3	HGFAC, RGS12	rs16844401-A	0.0676	4E-8		0.0683	[0.044-0.093] unit increase	NR [8041861] (imputed)	N
611	chr4	3449651	3449652	rs16844401	23969696	Sabater-Lleal M	2013-08-22	Circulation	Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.	Fibrinogen	91,323 European ancestry individuals	8,423 African American individuals, 1,447 Hispanic individuals	4p16.3	HGFAC, LRPAP1	rs16844401-A	0.08	2E-8	(EA)	0.015	[0.0091-0.0209] unit increase	Affymetrix, Illumina [2515567] (imputed)	N
611	chr4	3449780	3449781	rs75501914	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4p16.3	HGFAC	rs75501914-A	0.0941	5E-11		0.0039	[0.0027-0.0051] unit increase	Affymetrix, Illumina [8221591] (imputed)	N
611	chr4	3449780	3449781	rs75501914	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4p16.3	HGFAC	rs75501914-A	0.0656	3E-11		0.04939632	[0.035-0.064] unit increase	Affymetrix [~ 2500000] (imputed)	N
611	chr4	3449914	3449915	rs114303452	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4p16.3	NR	rs114303452-A	0.988567	2E-13		0.0918637	[0.068-0.116] unit increase	Affymetrix [16585745] (imputed)	N
611	chr4	3451108	3451109	rs2498323	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MCL1	5,364 Icelandic ancestry individuals	NA	4p16.3		rs2498323-A	0.09132	3E-15		0.25991	[0.2-0.32] unit decrease	Illumina [7506463] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	8E-13		0.0286	[0.021-0.036] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	2E-16		0.0329	[0.025-0.041] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	1E-28		0.0465	[0.038-0.055] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	5E-23		0.0412	[0.033-0.049] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	9E-34		0.0505	[0.042-0.059] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Low density lipoprotein cholesterol levels	341,875 European ancestry individuals, 6,003 African ancestry individuals, 7,319 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	3E-14		0.0303	[0.022-0.038] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	3E-25		0.0433	[0.035-0.052] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA	4p16.3	NR	rs2498323-A	NR	7E-16		0.0323	[0.024-0.04] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p16.3	HGFAC	rs2498323-A	0.0983	4E-16		0.3315	[0.25-0.41] mmHg increase	Affymetrix [NR] (imputed)	N
611	chr4	3451108	3451109	rs2498323	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.3	HGFAC	rs2498323-G	0.910625	2E-476	(HGFAC, 3617_80_4)	1.7605788	[1.7-1.82] unit increase	Illumina [> 1000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.3	HGFAC	rs2498323-G	0.910625	1E-408	(HGFAC, 8385_248_3)	1.6485513	[1.58-1.71] unit increase	Illumina [> 1000000] (imputed)	N
611	chr4	3451108	3451109	rs2498323	27841878	Hoffmann TJ	2016-11-14	Nat Genet	Genome-wide association analyses using electronic health records identify new loci influencing blood pressure variation.	Pulse pressure	295,529 European ancestry individuals, 8,231 Latino individuals, 3,058 African American individuals, 2,029 African British individuals, 7,701 East Asian ancestry individuals, 2,735 South Asian ancestry individuals, 1,979 mixed and unknown ancestry individuals	NA	4p16.3	HGFAC	rs2498323-G		1E-9		0.29	unit decrease	Affymetrix [at least 2696785] (imputed)	N
611	chr4	3451593	3451594	rs28581225	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4p16.3		rs28581225-G	0.42068	5E-15		0.0266224	[0.02-0.033] unit decrease	Illumina [13478928] (imputed)	N
611	chr4	3451593	3451594	rs28581225	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4p16.3	NR	rs28581225-C	0.569832	2E-14		0.029185	[0.022-0.037] SD units increase	Affymetrix, Illumina [16710488] (imputed)	N
611	chr4	3451593	3451594	rs28581225	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum total protein level	113,509 Japanese ancestry individuals	NA	4p16.3	HGFAC	rs28581225-?	NR	3E-16		0.03553	[0.027-0.044] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3452344	3452345	rs59950280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipid levels in LDL	115,082 European ancestry individuals	NA	4p16.3		rs59950280-G	0.668507	4E-8		0.0243348	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
611	chr4	3452344	3452345	rs59950280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	LDL cholesterol levels	115,082 European ancestry individuals	NA	4p16.3		rs59950280-G	0.668507	9E-9		0.0254056	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
611	chr4	3452344	3452345	rs59950280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Free cholesterol levels in medium LDL	115,082 European ancestry individuals	NA	4p16.3		rs59950280-G	0.668507	7E-9		0.0257149	[0.017-0.034] unit decrease	NR [11722792] (imputed)	N
611	chr4	3452344	3452345	rs59950280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in large LDL	115,082 European ancestry individuals	NA	4p16.3		rs59950280-G	0.668507	5E-8		0.0240925	[0.015-0.033] unit decrease	NR [11722792] (imputed)	N
611	chr4	3452344	3452345	rs59950280	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in small LDL	115,082 European ancestry individuals	NA	4p16.3		rs59950280-G	0.668507	3E-8		0.0246101	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
611	chr4	3452344	3452345	rs59950280	33536631	Bell S	2021-02-03	Commun Biol	A genome-wide meta-analysis yields 46 new loci associating with biomarkers of iron homeostasis.	Iron status biomarkers (total iron binding capacity)	135,430 European ancestry individuals	NA	4p16.3	HGFAC	rs59950280-A	0.335	6E-11		0.033	[0.023-0.043] SD increase	Affymetrix, Illumina [40000000] (imputed)	N
611	chr4	3452344	3452345	rs59950280	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Testosterone levels	310,461 European ancestry individuals, 5,453 African ancestry individuals, 6,680 South Asian ancestry individuals	NA	4p16.3	NR	rs59950280-A	NR	4E-13		0.0195	[0.014-0.025] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3452344	3452345	rs59950280	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.3	HGFAC	rs59950280-A	0.3316	7E-36		0.0254	[0.021-0.029] unit decrease	Affymetrix [18391927] (imputed)	N
611	chr4	3452344	3452345	rs59950280	33067605	Folkersen L	2020-10-16	Nat Metab	Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.	Hepatocyte growth factor levels	21,758 European ancestry individuals	9,173 individuals	4p16.3		rs59950280-A	0.34	3E-33		0.1353	unit increase	Affymetrix, Illumina [20300000] (imputed)	N
611	chr4	3452344	3452345	rs59950280	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4p16.3	NR	rs59950280-A	0.331457	2E-8		0.0415487	[0.027-0.056] unit decrease	Affymetrix [17914406] (imputed)	N
611	chr4	3452344	3452345	rs59950280	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p16.3	HGFAC, DOK7	rs59950280-?	NR	3E-11		0.019112835	[0.013-0.025] unit decrease	Illumina [27896057] (imputed)	N
611	chr4	3452344	3452345	rs59950280	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	Total cholesterol levels	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p16.3	intergenic	rs59950280-A	0.3883	4E-12		0.0198	[0.014-0.025] mg dl-1 increase	Affymetrix [up to 31400000] (imputed)	N
611	chr4	3452344	3452345	rs59950280	29212778	van der Harst P	2017-12-06	Circ Res	Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease.	Coronary artery disease	34,541 cases, 261,984 controls	88,192 cases, 162,544 controls	4p16.3	HGFAC	rs59950280-A	0.341	2E-6		0.033	[0.019-0.047] unit increase	Affymetrix [7947838] (imputed)	N
611	chr4	3452344	3452345	rs59950280	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to 1000 Genomes)		4p16.3	HGFAC, DOK7	rs59950280-?	NR	3E-11		0.008	unit increase	Affymetrix, Illumina [10883314] (imputed)	N
611	chr4	3452344	3452345	rs59950280	26561523	de Vries PS	2015-11-10	Hum Mol Genet	A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.	Fibrinogen levels	120,246 European ancestry individuals	NA	4p16.3	HGFAC	rs59950280-A	0.34	2E-12		0.0075	NR unit increase	Affymetrix, Illumina [~ 10700000] (imputed)	N
611	chr4	3452344	3452345	rs59950280	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Triglycerides	up to 62,166 European ancestry individuals	NA	4p16.3	LRPAP1	rs59950280-A	0.31	1E-10		0.044	[0.03-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
611	chr4	3452344	3452345	rs59950280	25961943	Surakka I	2015-05-11	Nat Genet	The impact of low-frequency and rare variants on lipid levels.	Cholesterol, total	up to 62,166 European ancestry individuals	NA	4p16.3	LRPAP1	rs59950280-A	0.31	1E-10		0.044	[0.03-0.058] s.d. increase	Affymetrix, Illumina, Perlegen [up to 9657952] (imputed)	N
611	chr4	3455361	3455362	rs1203109	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4p16.3	NR	rs1203109-C	0.22690200000000005	2E-11		0.0237647	[0.017-0.031] unit increase	Affymetrix [16577313] (imputed)	N
611	chr4	3459848	3459849	rs1203107	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4p16.3		rs1203107-?	NR	2E-8				Affymetrix [NR] (imputed)	N
611	chr4	3461070	3461071	rs1203106	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4p16.3		rs1203106-?	NR	2E-8				Affymetrix [NR] (imputed)	N
611	chr4	3461824	3461825	rs1203105	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA			rs1203105-?	NR	2E-8				Affymetrix [NR] (imputed)	N
611	chr4	3468069	3468070	rs2344205	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4p16.3		rs2344205-?	NR	1E-9				Affymetrix [NR] (imputed)	N
611	chr4	3468069	3468070	rs2344205	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4p16.3	NR	rs2344205-?	NR	3E-46	(HGFA)			Illumina [~ 4000000] (imputed)	N
611	chr4	3468435	3468436	rs13103813	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Calcium levels	71,701 Japanese ancestry individuals	NA	4p16.3	DOK7	rs13103813-?	NR	2E-8		0.0309	[0.02-0.042] unit decrease novel	Illumina [6108953] (imputed)	N
611	chr4	3468968	3468969	rs9997134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p16.3		rs9997134-C	0.495256	2E-8		0.0116627	[0.0076-0.0157] unit decrease	Illumina [13479295] (imputed)	N
611	chr4	3469291	3469292	rs10937925	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4p16.3		rs10937925-?	NR	2E-9				Affymetrix [NR] (imputed)	N
611	chr4	3469825	3469826	rs62275880	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	LDL cholesterol	343,621 European ancestry individuals, 72,866 East Asian ancestry individuals	NA	4p16.3		rs62275880-T	NR	1E-13		0.02	[0.015-0.025] unit increase	Affymetrix, Illumina [20521447] (imputed)	N
611	chr4	3470603	3470604	rs36205397	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	425,097 European ancestry individuals	NA	4p16.3	NR	rs36205397-G	0.42131399999999997	1E-13		0.00963332	[0.0071-0.0122] unit increase	Affymetrix [16578495] (imputed)	N
611	chr4	3473138	3473139	rs6831256	29782485	Rueger S	2018-05-21	PLoS Genet	Evaluation and application of summary statistic imputation to discover new height-associated loci.	Height	253,288 European ancestry individuals	336,474 European ancestry individuals	4p16.3	NR	rs6831256-G	0.424226395133562	3E-6				NR [9276018] (imputed)	N
611	chr4	3473138	3473139	rs6831256	28334899	Spracklen CN	2017-02-21	Hum Mol Genet	Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.	Triglyceride levels	28,183 East Asian ancestry individuals, 177,861 European ancestry individuals	10,857 Chinese ancestry individuals	4p16.3	LRPAP1	rs6831256-A	0.591	3E-15	(Trans-ethnic initial)	0.0258	[0.019-0.033] unit decrease (EA Beta values)	Affymetrix, Illumina [up to 1900000] (imputed)	N
611	chr4	3473138	3473139	rs6831256	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Triglycerides	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	LRPAP1	rs6831256-G	0.42	2E-12		0.026	[NR] mg/dL increase	NR [NR] (imputed)	N
611	chr4	3473138	3473139	rs6831256	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	LDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	LRPAP1	rs6831256-G	0.42	2E-8		0.022	[NR] unit increase	NR [NR] (imputed)	N
611	chr4	3473138	3473139	rs6831256	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	Cholesterol, total	94,595 European ancestry individuals	93,982 European ancestry individuals	4p16.3	LRPAP1	rs6831256-G	0.42	1E-10		0.025	[NR] unit increase	NR [NR] (imputed)	N
611	chr4	3473750	3473751	rs11947277	33020668	Koyama S	2020-10-05	Nat Genet	Population-specific and trans-ancestry genome-wide analyses identify distinct and shared genetic risk loci for coronary artery disease.	Coronary artery disease	25,892 Japanese ancestry cases, 95,342 European ancestry cases, 142,336 Japanese ancestry controls, 385,488 European ancestry controls	NA	4p16.3	DOK7	rs11947277-?	NR	2E-8		0.0311072	[0.02-0.042] unit increase	Illumina [4804024] (imputed)	N
611	chr4	3477081	3477082	rs79295655	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs79295655-A	NR	4E-15		0.0677	[0.051-0.085] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3480135	3480136	rs2699429	28107422	de Vries PS	2017-01-20	PLoS One	Comparison of HapMap and 1000 Genomes Reference Panels in a Large-Scale Genome-Wide Association Study.	Fibrinogen levels	91,953 European ancestry individuals (imputed to HapMap)		4p16.3	DOK7	rs2699429-?	NR	1E-7		0.006	unit increase	Affymetrix, Illumina [2749429] (imputed)	N
611	chr4	3482212	3482213	rs78649910	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4p16.3		rs78649910-?	NR	8E-9		0.0191377	[0.013-0.026] unit decrease	NR [6912294] (imputed)	N
611	chr4	3482212	3482213	rs78649910	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4p16.3		rs78649910-T	0.893821	6E-10		0.02	[0.014-0.026] unit decrease	NR [7250403] (imputed)	N
611	chr4	3482212	3482213	rs78649910	32059762	Manousaki D	2020-02-05	Am J Hum Genet	Genome-wide Association Study for Vitamin D Levels Reveals 69 Independent Loci.	Serum 25-Hydroxyvitamin D levels	443,734 European ancestry individuals	NA	4p16.3	NR	rs78649910-A	0.110004	4E-9		0.018331	[0.012-0.024] unit decrease	Affymetrix [16668957] (imputed)	N
611	chr4	3482295	3482296	rs73080940	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4p16.3	NR	rs73080940-C	NR	3E-9		0.0233	[0.016-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
611	chr4	3485051	3485052	rs2699436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Total cholesterol levels	342,508 European ancestry individuals, 6,014 African ancestry individuals, 7,336 South Asian ancestry individuals	NA	4p16.3	NR	rs2699436-T	NR	2E-9		0.0219	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3485051	3485052	rs2699436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Sex hormone-binding globulin levels	310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals	NA	4p16.3	NR	rs2699436-T	NR	2E-14		0.0293	[0.022-0.037] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3485051	3485052	rs2699436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p16.3	NR	rs2699436-T	NR	1E-12		0.0271	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3485051	3485052	rs2699436	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4p16.3	NR	rs2699436-T	NR	4E-13		0.0275	[0.02-0.035] unit increase	Affymetrix [9000000] (imputed)	N
611	chr4	3493622	3493623	rs75029597	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p16.3	DOK7	rs75029597-A	0.0341107059387446	4E-6	(F_Sutterellaceae_HB)	0.930226	[0.53-1.33] unit decrease	Illumina [7711310] (imputed)	N
611	chr4	3495940	3495941	rs1054661	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.3		rs1054661-?	NR	2E-14				NR [~ 8900000] (imputed)	N
611	chr4	3496610	3496611	rs11735173	33332786	Zhang Y	2020-12-15	Spine (Phila Pa 1976)	Genome-Wide Association Analysis Across 16,956 Patients Identifies a Novel Genetic Association Between BMP6, NIPAL1, CNGA1 and Spondylosis.	Spondylosis	4,434 European ancestry cases, 9,416 European ancestry controls	NA	4p16.3	DOK7	rs11735173-T	NR	7E-6		0.939	[0.914- 0.965]	Illumina [6740241] (imputed)	N
611	chr4	3496682	3496683	rs78770234	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.3	LRPAP1	rs78770234-A	0.033	4E-23	(alpha-2-macroglobulin receptor-associated protein, LRPAP1.3640.14.3)	0.68	[0.54-0.82] unit decrease	Affymetrix [10572788] (imputed)	N
611	chr4	3502912	3502913	rs2858018	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p16.3		rs2858018-?	NR	4E-9				Illumina [1128286]	N
611	chr4	3505447	3505448	rs3468	31609978	Huang L	2019-10-14	PLoS Genet	Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft.	Nonsyndromic cleft palate	930 Southern Han Chinese ancestry cases, 5,048 Southern Han Chinese ancestry controls	1,141 Han Chinese ancestry cases, 5,097 Han Chinese ancestry controls	4p16.3	WHSC1	rs3468-G	0.455	5E-11		1.256	NR	Illumina [at least 870261] (imputed)	N
611	chr4	3537696	3537697	rs113370662	31095341	Kerns SL	2019-05-16	J Natl Cancer Inst	Radiogenomics Consortium Genome-Wide Association Study Meta-analysis of Late Toxicity after Prostate Cancer Radiotherapy.	Toxicity response to radiotherapy in prostate cancer (decreased urine stream) (time to event)	3,470 European ancestry individuals	NR	4p16.3	NR	rs113370662-?	0.04	5E-7		2.78	[1.87-4.15]	Affymetrix, Illumina [~ 6000000] (imputed)	N
612	chr4	3665155	3665156	rs374858907	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	4p16.3	NR	rs374858907-?	NR	3E-6		0.2245	[0.13-0.32] unit increase	Illumina [~ 7800000] (imputed)	N
613	chr4	3719379	3719380	rs11938629	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Prevotella)	1,068 Japanese ancestry individuals	NA	4p16.3	intergenic	rs11938629-G	0.48	3E-6	(female)	1.31	[0.76-1.86] unit decrease	Illumina [6380737] (imputed)	N
613	chr4	3743791	3743792	rs374727	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4p16.3		rs374727-G	NR	4E-9		0.0105	[0.007-0.014] unit decrease	Affymetrix, Illumina [20538708] (imputed)	N
613	chr4	3747841	3747842	rs4498196	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Blood urea nitrogen levels	416,178 European and unknown ancestry individuals	NA	4p16.3	ADRA2C	rs4498196-A	0.5335	6E-10		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8176554] (imputed)	N
613	chr4	3754426	3754427	rs12645890	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urinary creatinine levels	333,115 European ancestry individuals, 5,789 African ancestry individuals, 7,009 South Asian ancestry individuals	NA	4p16.3	NR	rs12645890-G	NR	1E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
613	chr4	3757379	3757380	rs13143189	31409800	Pazoki R	2019-08-13	Nat Commun	GWAS for urinary sodium and potassium excretion highlights pathways shared with cardiovascular traits.	Urinary potassium excretion	446,230 European ancestry individuals	7,612 African ancestry individuals, 10,095 South Asian ancestry individuals	4p16.3	ADRA2C	rs13143189-G	0.563914	2E-19	(EA)	0.0109685	[0.0086-0.0134] unit increase	Affymetrix [~ 8800000] (imputed)	N
613	chr4	3791855	3791856	rs73200479	34343768	Chu X	2021-07-01	Sleep Med	Insomnia affects the levels of plasma bilirubin and protein metabolism: an observational study and GWGEIS in UK Biobank cohort.	Total protein levels x insomnia interaction	93,452 cases with insomnia, 78,122 controls without insomnia	NA	4p16.3		rs73200479-?	NR	8E-9				Affymetrix [NR] (imputed)	N
613	chr4	3793546	3793547	rs28591486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p16.3		rs28591486-?	NR	5E-9				NR [~ 8900000] (imputed)	N
614	chr4	3825941	3825942	rs28734075	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4p16.3		rs28734075-?	NR	7E-6	(clearcell)	3.22		Illumina [11595112] (imputed)	N
614	chr4	3868908	3868909	rs145569978	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4p16.3	NR	rs145569978-?	NR	9E-6		1.09317	[0.61-1.58] unit increase	NR [13958389] (imputed)	N
614	chr4	3918698	3918699	rs10016781	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	4p16.3	ADRA2C, FAM86EP	rs10016781-G	0.613928566	5E-6		1.1073242	[1.06-1.16]	Illumina [10439017] (imputed)	N
615	chr4	3935144	3935145	rs28716006	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (overestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	4p16.3	NR	rs28716006-?	NR	9E-12		6.821	NR z score increase	Illumina [at least 830937] (imputed)	N
616	chr4	4076194	4076195	rs35020435	33331911	Freidin MB	2020-12-17	Rheumatology (Oxford)	An association between chronic widespread pain and the gut microbiome.	Chronic widespread musculoskeletal pain	up to 531 European or unknown ancestry cases, up to 2,742 European or unknown ancestry controls	NA	4p16.3	AC116562.2, RP11-489M13.1	rs35020435-C	0.31	3E-6		0.0577	[0.034-0.082] unit increase	NR [4841651] (imputed)	N
616	chr4	4088635	4088636	rs34393106	30954325	Kamboh MI	2019-03-11	Neurobiol Aging	Population-based genome-wide association study of cognitive decline in older adults free of dementia: identification of a novel locus for the attention domain.	Age-related cognitive decline (executive function) (slope of z-scores)	1,145 European ancestry individuals	NA	4p16.3	FAM86EP, OTOP1	rs34393106-A	0.58	4E-6		0.28	unit increase	Illumina [5600000] (imputed)	N
616	chr4	4150427	4150428	rs7698880	27770636	Mez J	2016-10-20	Alzheimers Dement	Two novel loci, COBL and SLC10A2, for Alzheimer's disease in African Americans.	Late-onset Alzheimer's disease	1,825 African American ancestry cases, 3,784 African American ancestry controls		4p16.3	Intergenic	rs7698880-C	0.124	2E-6	(liability model)	0.14	[0.081-0.199] unit decrease	NR [19725427] (imputed)	N
617	chr4	4250132	4250133	rs2272744	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4p16.3		rs2272744-C	NR	6E-10		0.95323		Affymetrix, Illumina [62056310] (imputed)	N
617	chr4	4252955	4252956	rs2980098	24351856	Nanayakkara S	2013-12-18	J Occup Health	An integrative study of the genetic, social and environmental determinants of chronic kidney disease characterized by tubulointerstitial damages in the North Central Region of Sri Lanka.	Glomerular filtration rate	301 Sri Lankan Sinhalese ancestry cases, 276 Sri Lankan Sinhalese ancestry controls	NA	4p16.3	TMEM128	rs2980098-G	0.49	4E-6		9.11	[NR] unit increase	Illumina [543848]	N
617	chr4	4272808	4272813	rs150938341	29346644	Yan Q	2018-01-15	Hum Mol Genet	Genome-wide Analysis of Disease Progression in Age-related Macular Degeneration.	Disease progression in age-related macular degeneration	1,105 progressed eyes and 3,912 non-progressed eyes from 2,721 European ancestry individuals	NA	4p16.3	LYAR	rs150938341-C	0.06	3E-6		1.73		Illumina [8974355] (imputed)	N
617	chr4	4300409	4300410	rs6446601	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque score in type 2 diabetes	691 African American individuals	205 African American individuals	4p16.3	ZBTB49	rs6446601-?	NR	3E-6		0.428	[0.16-0.7] unit increase	Illumina [at least 13000000] (imputed)	N
618	chr4	4331828	4331829	rs34246082	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p16.3	NR	rs34246082-?	NR	4E-8				Illumina [7760689] (imputed)	N
618	chr4	4343239	4343240	rs4688956	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	4p16.3		rs4688956-C	0.421	5E-6		0.931	[0.904-0.959]	Affymetrix, Illumina [NR] (imputed)	N
618	chr4	4361748	4361749	rs7442201	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4p16.3	D4S234E	rs7442201-?	NR	3E-7		0.268	[0.16-0.38] unit decrease	Illumina [at least 13000000] (imputed)	N
618	chr4	4372655	4372656	rs12511747	26821981	Koga AT	2016-01-28	J Neural Transm (Vienna)	Genome-wide association analysis to predict optimal antipsychotic dosage in schizophrenia: a pilot study.	antipsychotic drug dosage in schizophrenia or schizoaffective disorder	up to 39 European ancestry schizophrenia cases, up to 40 European ancestry schizoaffective cases	NA	4p16.3	NR	rs12511747-A	NR	5E-6	(PM %)	0.2764	[NR] unit decrease	Illumina [1190033]	N
618	chr4	4388873	4388874	rs10015223	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hair color	approximately 452,000 European ancestry individuals	NA	4p16.3		rs10015223-?	NR	3E-15				NR [~ 8900000] (imputed)	N
618	chr4	4416417	4416418	rs73199814	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Bacterial meningitis	842 European ancestry cases, 82,778 European ancestry controls	NA	4p16.3	NR	rs73199814-?	NR	5E-6		1.6047	[0.75-2.46] unit increase	Illumina [at least 560000] (imputed)	N
618	chr4	4446424	4446425	rs7693922	31519223	Scepanovic P	2019-09-13	Microbiome	A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals.	Gut microbiota (beta diversity)	858 Metropolitan French ancestry individuals	NA	4p16.3	NR	rs7693922-G	0.217	4E-7	(Jaccard metric)	4.949767	NR z-score increase	Illumina [5293637] (imputed)	N
618	chr4	4452451	4452452	rs75584521	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p16.3	NR	rs75584521-T	0.01045	1E-8	(GPNMB)	0.05954	NR unit increase	Illumina [1671387] (imputed)	N
619	chr4	4463063	4463064	rs10017573	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p16.3	NR	rs10017573-?	NR	1E-24				Affymetrix [NR]	N
619	chr4	4485588	4485589	rs149430155	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (covid pneumonia vs population)	1,004 European ancestry cases, 680,354 European ancestry controls, 218 Hispanic or Latin American cases, 94,318 Hispanic or Latin American controls, 64 Black or African American cases, 22,412 Black or African American controls	NA	4p16.3		rs149430155-?	NR	6E-6		0.6858898	[0.39-0.98] unit decrease	Illumina [9901720] (imputed)	N
619	chr4	4537915	4537916	rs3910659	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 25)	3,566 European ancestry individuals	4,680 European ancestry individuals	4p16.2		rs3910659-G	0.169712794	4E-9				Illumina [7417619] (imputed)	N
619	chr4	4577211	4577212	rs6842024	32737115	Shirai Y	2020-07-31	Ann Rheum Dis	Association of the RPA3-UMAD1 locus with interstitial lung diseases complicated with rheumatoid arthritis in Japanese.	Interstitial lung diseases in rheumatoid arthritis	358 Japanese ancestry cases, 4,550 Japanese ancestry controls	NA	4p16.2	NR	rs6842024-?	0.35	2E-6		1.51	[1.28-1.78]	Illumina [5934489] (imputed)	N
620	chr4	4595318	4595319	rs146803393	34782712	Thalamuthu A	2021-11-15	Mol Psychiatry	Genome-wide interaction study with major depression identifies novel variants associated with cognitive function.	Cognitive function (processing speed) x major depressive disorder interaction (2df)	3,510 European ancestry major depressive disorder cases, 6,057 European ancestry major depressive disorder controls	NA	4p16.2		rs146803393-T	0.01	3E-8				NR [NR] (imputed)	N
620	chr4	4605512	4605513	rs12508927	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	4p16.2	RP11-323F5.2	rs12508927-?	NR	6E-6		5.02	[2.29-11.0]	Illumina [654642] (imputed)	N
620	chr4	4648046	4648047	rs870142	33201861	Lahm H	2020-11-17	J Clin Invest	Congenital heart disease risk loci identified by genome-wide association study in European patients.	Congenital heart disease (septal defects)	1,074 European ancestry cases, 8,486 European ancestry controls	NA	4p16.2	STX18-AS1	rs870142-?		4E-7	(atrial septal defect)	1.4	[1.23-1.60]	Affymetrix, Illumina [9216527] (imputed)	N
620	chr4	4648046	4648047	rs870142	23708191	Cordell HJ	2013-05-26	Nat Genet	Genome-wide association study of multiple congenital heart disease phenotypes identifies a susceptibility locus for atrial septal defect at chromosome 4p16.	Congenital heart disease	1,479 European ancestry congenital heart disease cases, 340 European ancestry ostium secundum atrial septal defect cases, 5,159 European ancestry controls	417 European ancestry ostium secundum atrial septal defect cases, 209 European ancestry ventricular septal defect cases, 2,520 European ancestry controls	4p16.2	STX18, MSX1, LOC100507266	rs870142-A	0.228	3E-10	(ASD)	1.456	[NR]	Illumina [514952]	N
620	chr4	4648917	4648918	rs6818775	33393196	Soliai M	2021-01-03	Int Forum Allergy Rhinol	Two-stage genome-wide association study of chronic rhinosinusitis and disease subphenotypes highlights mucosal immunity contributing to risk.	Chronic rhinosinusitis	483 European ancestry cases, 2,057 European ancestry controls	NA	4p16.2	STX18-AS1, STX18, LOC01928279	rs6818775-A	0.161	2E-7		0.4854	[NR]	Illumina [4528849] (imputed)	N
620	chr4	4657541	4657542	rs190569495	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p16.2	LOC100507266	rs190569495-T	0.999	2E-6	(AA)	0.296	unit increase	Illumina [NR] (imputed)	N
620	chr4	4678906	4678907	rs7675915	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p16.2	NR	rs7675915-?	NR	3E-8	(Latino)	0.6309	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
620	chr4	4678906	4678907	rs7675915	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p16.2	NR	rs7675915-?	NR	3E-8		0.3501	[NR] unit increase	Illumina [up to 11892802] (imputed)	N
620	chr4	4704013	4704014	rs4476553	22952603	Hart AB	2012-08-28	PLoS One	Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).	Response to amphetamines	1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals	NA	4p16.2	intergenic	rs4476553-?	NR	3E-6	(SF5)			Affymetrix [5476100] (imputed)	N
621	chr4	4719493	4719494	rs1000579	28714907	Treutlein J	2017-07-17	Genes (Basel)	Genetic Contribution to Alcohol Dependence: Investigation of a Heterogeneous German Sample of Individuals with Alcohol Dependence, Chronic Alcoholic Pancreatitis, and Alcohol-Related Cirrhosis.	Alcohol dependence	1,331 German ancestry cases, 1,934 German ancestry controls	NA	4p16.2	STX18-AS1	rs1000579-G	0.3981	2E-7		1.315		Illumina [194024]	N
621	chr4	4719493	4719494	rs1000579	22004471	Frank J	2011-10-18	Addict Biol	Genome-wide significant association between alcohol dependence and a variant in the ADH gene cluster.	Alcohol dependence	1,333 European ancestry male cases, 2,168 European ancestry male controls	NA	4p16.2	NR	rs1000579-?	NR	4E-7		1.3	[1.17-1.43]	Illumina [463044]	N
621	chr4	4746394	4746395	rs767825872	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body mass index	1,249 whole genome sequenced European ancestry individuals, 3,538 whole genome sequenced individuals, 46,635 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,170 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,019 Mylopotamos (founder/genetic isolate) individuals, 932 Pomak (founder/genetic isolate) individuals, 1,778 Val Borbera (founder/genetic isolate) individuals	209,191 European ancestry individuals	4p16.2	STX18-AS1	rs767825872-T	0.0042	7E-6		1.6399	[0.92-2.35] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
621	chr4	4753511	4753512	rs9997185	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs9997185-?	NR	9E-9	(left cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4753511	4753512	rs9997185	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs9997185-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4761139	4761140	rs4689933	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p16.2		rs4689933-C	0.32	3E-10		6.28	z score increase	Affymetrix [9061022] (imputed)	N
621	chr4	4761861	4761862	rs1318947	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs1318947-?	NR	2E-12	(left cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4761861	4761862	rs1318947	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs1318947-?	NR	1E-12	(right cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4762382	4762383	rs2172442	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.2		rs2172442-G	0.32	9E-17		8.32	z score increase	Affymetrix [9061022] (imputed)	N
621	chr4	4762671	4762672	rs6854227	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p16.2	NR	rs6854227-G	0.4405	6E-11				NR [9056863] (imputed)	N
621	chr4	4764025	4764026	rs1039906	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p16.2	Intergenic	rs1039906-?		2E-6		1.04	[1.02-1.06]	Illumina [7645193] (imputed)	N
621	chr4	4764025	4764026	rs1039906	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p16.2	Intergenic	rs1039906-?		3E-6		1.31	[1.17-1.47]	Illumina [7645193] (imputed)	N
621	chr4	4766264	4766265	rs6446685	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Allergic disease (asthma, hay fever or eczema)	106,772 European ancestry cases, 239,773 European ancestry controls	83,335 cases, 34,934 controls	4p16.2	NR	rs6446685-A	0.3759	1E-9		1.035	[1.024-1.046]	Affymetrix [15688218] (imputed)	N
621	chr4	4767694	4767695	rs6830371	31361310	Johansson A	2019-07-30	Hum Mol Genet	Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema.	Hay fever and/or eczema	84,034 European ancestry cases, 239,773 European ancestry controls	NA	4p16.2	NR	rs6830371-T	0.3761	1E-9		1.038	[1.026-1.05]	Affymetrix [15688218] (imputed)	N
621	chr4	4768474	4768475	rs11736191	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eczema	approximately 459,000 European ancestry individuals	NA	4p16.2		rs11736191-?	NR	4E-10				NR [~ 8900000] (imputed)	N
621	chr4	4773036	4773037	rs55985553	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p16.2	NR	rs55985553-?		1E-11				NR [7428630] (imputed)	N
621	chr4	4773479	4773480	rs7375216	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs7375216-?	NR	3E-8	(left cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4775400	4775401	rs10033073	35079123	Chambers T	2022-01-25	Mol Psychiatry	Genetic common variants associated with cerebellar volume and their overlap with mental disorders: a study on 33,265 individuals from the UK-Biobank.	Total cerebellar volume (excluding Crus I vermis)	33,265 European ancestry individuals	NA	4p16.2		rs10033073-A	NR	1E-9		0.0334	[0.023-0.044] unit increase	Affymetrix [6193476] (imputed)	N
621	chr4	4775400	4775401	rs10033073	29083406	Ferreira MA	2017-10-30	Nat Genet	Shared genetic origin of asthma, hay fever and eczema elucidates allergic disease biology.	Allergic disease (asthma, hay fever or eczema)	180,129 European ancestry cases, 180,709 European ancestry controls	NA	4p16.2	STX18, MSX1	rs10033073-G	0.35	1E-10		1.04	[1.03-1.05]	Affymetrix, Illumina [8307659] (imputed)	N
621	chr4	4776162	4776163	rs12108538	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer in ever smokers	23,223 European ancestry cases,  16,964 European ancestry controls	NA	4p16.2	LOC101928279	rs12108538-G	0.943863012	2E-6		1.1674694	[1.1-1.24]	Illumina [10439017] (imputed)	N
621	chr4	4778174	4778175	rs76411246	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p16.2		rs76411246-A	0.31	2E-13		7.37	z score increase	Affymetrix [9061022] (imputed)	N
621	chr4	4778174	4778175	rs76411246	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p16.2	NR	rs76411246-A	0.3289	1E-14				NR [9056863] (imputed)	N
621	chr4	4778174	4778175	rs76411246	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4p16.2	CDC42EP3	rs76411246-?		2E-12				NR [7428630] (imputed)	N
621	chr4	4780453	4780454	rs75721280	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p16.2	NR	rs75721280-?	NR	1E-8	(right cerebellum exterior)			NR [9227495] (imputed)	N
621	chr4	4784138	4784139	rs1533096	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.2	LOC101928279	rs1533096-C	0.5948	3E-8		0.0198	[0.013-0.027] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
621	chr4	4784138	4784139	rs1533096	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p16.2	LOC101928279	rs1533096-C	0.5559	7E-8		0.020675	[0.013-0.028] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
621	chr4	4796442	4796443	rs34775372	29698419	Pande M	2018-04-26	PLoS One	Genetic susceptibility markers for a breast-colorectal cancer phenotype: Exploratory results from genome-wide association studies.	Breast cancer and/or colorectal cancer	589 European ancestry colorectal cancer with a family history of breast cancer cases, 378 European ancestry breast cancer cases with a family history of colorectal cancer cases, 18 European ancestry breast and colorectal cancer cases, 1,769 European ancestry controls	NA	4p16.2	MSX1	rs34775372-C	0.92	6E-6		1.69	[1.33-2.13]	Illumina [6220060] (imputed)	N
621	chr4	4805453	4805454	rs13117653	33288918	White JD	2020-12-07	Nat Genet	Insights into the genetic architecture of the human face.	Facial morphology (segment 34)	4,680 European ancestry individuals	3,566 European ancestry individuals	4p16.2		rs13117653-A	0.328421742	4E-18				Illumina [7417619] (imputed)	N
621	chr4	4818924	4818925	rs1907989	28232668	Yu Y	2017-02-24	Nat Commun	Genome-wide analyses of non-syndromic cleft lip with palate identify 14 novel loci and genetic heterogeneity.	Nonsyndromic cleft lip with cleft palate	2,033 Han Chinese ancestry cases, 4,051 Han Chinese ancestry controls	1,346 Han Chinese ancestry cases, 4,542 Han Chinese ancestry controls	4p16.2	MSX1	rs1907989-G	0.49	2E-8		1.1764705	[NR]	Illumina [803202]	N
622	chr4	4872386	4872387	rs116521001	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in serous epithelial ovarian cancer	4,037 European ancestry individuals	NA	4p16.2	NR	rs116521001-A		2E-6		0.366	[0.22-0.52] unit increase	Illumina [12770451] (imputed)	N
622	chr4	4887113	4887114	rs191540052	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p16.2	Intergenic	rs191540052-A	0.999	4E-6	(AA)	0.271	unit increase	Illumina [NR] (imputed)	N
622	chr4	4905345	4905346	rs76225479	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p16.2	Intergenic	rs76225479-G	0.997	4E-7	(AA)	0.224	unit increase	Illumina [NR] (imputed)	N
622	chr4	4917970	4917971	rs4639019	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.2	RN7SKP113	rs4639019-A	NR	3E-8		0.0174637	[0.011-0.024] unit decrease	Affymetrix [319769] (imputed)	N
622	chr4	4932824	4932825	rs7678151	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Inguinal hernia	16,725 European ancestry cases, 428,356 European ancestry controls, 1,664 East Asian ancestry cases, 177,062 East Asian ancestry controls	NA	4p16.2		rs7678151-G	NR	1E-9		0.0738	[0.05-0.098] unit increase	Affymetrix, Illumina [25841416] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4p16.2		rs4450871-G	NR	5E-8		0.0128	[0.0083-0.0173] unit decrease	Affymetrix, Illumina [20531459] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	9E-27		0.0303754	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	2E-27		0.0307333	[0.025-0.036] unit decrease	Affymetrix [319769] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	1E-14		0.0220101	[0.016-0.028] unit decrease	Affymetrix [321114] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	4E-12		0.0204257	[0.015-0.026] unit increase	Affymetrix [321788] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	2E-8		0.0158804	[0.01-0.021] unit increase	Affymetrix [321016] (imputed)	N
623	chr4	4990297	4990298	rs4450871	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs4450871-G	NR	4E-15		0.022471	[0.017-0.028] unit decrease	Affymetrix [321169] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Triglycerides	429,011 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	1E-12		0.014	mmol/L decrease	NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Sex hormone-binding globulin levels	389,354 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	3E-8		0.011	nmol/L increase	NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	2E-24				NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	High density lipoprotein cholesterol levels	392,965 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	5E-7		0.008	mmol/L increase	NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	1E-8		0.009	% increase	NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Alanine aminotransferase levels	429,203 European ancestry individuals	NA	4p16.2		rs4450871-G	0.44	9E-7		0.009	U/L decrease	NR [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p16.2	CYTL1	rs4450871-A	0.555998	6E-12		0.0137723	[0.0099-0.0177] unit increase	Affymetrix [NR] (imputed)	N
623	chr4	4990297	4990298	rs4450871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p16.2	NR	rs4450871-G	0.442029	6E-14		0.00634132	[0.0047-0.008] unit increase	Affymetrix [16582909] (imputed)	N
623	chr4	4990297	4990298	rs4450871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p16.2	NR	rs4450871-G	0.442403	2E-14		0.00919546	[0.0068-0.0116] unit increase	Affymetrix [16585854] (imputed)	N
623	chr4	4990297	4990298	rs4450871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p16.2	NR	rs4450871-G	0.442029	3E-7		0.00504184	[0.0032-0.0069] unit increase	Affymetrix [16582965] (imputed)	N
623	chr4	4990297	4990298	rs4450871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p16.2	NR	rs4450871-G	0.442403	6E-8		0.00795214	[0.0052-0.0107] unit increase	Affymetrix [16585866] (imputed)	N
623	chr4	4990297	4990298	rs4450871	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p16.2	LOC101928306	rs4450871-A	0.55821	1E-10		0.0119215	[0.0083-0.0156] unit decrease	NR [13737936] (imputed)	N
623	chr4	4990297	4990298	rs4450871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p16.2		rs4450871-?	NR	1E-17				NR [~ 8900000] (imputed)	N
623	chr4	4990297	4990298	rs4450871	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p16.2		rs4450871-?	NR	9E-9				NR [~ 8900000] (imputed)	N
623	chr4	4990297	4990298	rs4450871	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4p16.2	NR	rs4450871-A	0.56	2E-19		0.018	[0.014-0.022] unit increase	Affymetrix [2446094] (imputed)	N
623	chr4	4990297	4990298	rs4450871	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4p16.2	NR	rs4450871-A	0.56	5E-8				Affymetrix [2446094] (imputed)	N
623	chr4	4992366	4992367	rs7672495	26301688	Li YR	2015-08-24	Nat Med	Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases.	Pediatric autoimmune diseases	97 European ancestry thyroiditis cases, 107 European ancestry ankylosing spondylitis cases, 100 European ancestry psoriasis cases, 173 European ancestry celiac disease cases, 254 European ancestry systemic lupus erythematosus cases, 308 European ancestry common variable inmunodeficiency cases, 865 European ancestry ulcerative colitis cases, 1,086 European ancestry Type 1 diabetes cases, 1,123  European ancestry juvenile idiopathic arthritis cases, 1,922  European ancestry Crohn's disease cases, 10,718 European ancestry controls	NA	4p16.2	CYTL1	rs7672495-C	0.18	1E-7				Illumina [7347414] (imputed)	N
623	chr4	5003149	5003150	rs7679205	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4p16.2	NR	rs7679205-A	0.1174	4E-6		0.0142	[0.0081-0.0203] unit increase	NR [~ 27400000] (imputed)	N
623	chr4	5005626	5005627	rs13102541	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.2	CYTL1	rs13102541-A	NR	7E-9		0.0236422	[0.016-0.032] unit increase	Affymetrix [319769] (imputed)	N
623	chr4	5005626	5005627	rs13102541	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs13102541-A	NR	1E-8		0.0233785	[0.015-0.031] unit increase	Affymetrix [319769] (imputed)	N
623	chr4	5016882	5016883	rs11722554	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CYTL1	5,351 Icelandic ancestry individuals	NA	4p16.2		rs11722554-A	0.02263	2E-36		0.732127	[0.62-0.85] unit decrease	Illumina [7506463] (imputed)	N
623	chr4	5016882	5016883	rs11722554	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p16.2		rs11722554-A	NR	3E-17		0.0367	[0.028-0.045] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
623	chr4	5016882	5016883	rs11722554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.2	CYTL1	rs11722554-A	NR	2E-9		0.0451133	[0.03-0.06] unit decrease	Affymetrix [319769] (imputed)	N
623	chr4	5016882	5016883	rs11722554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs11722554-A	NR	8E-11		0.0486692	[0.034-0.063] unit decrease	Affymetrix [319769] (imputed)	N
623	chr4	5016882	5016883	rs11722554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs11722554-A	NR	9E-15		0.0584234	[0.044-0.073] unit decrease	Affymetrix [321114] (imputed)	N
623	chr4	5016882	5016883	rs11722554	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs11722554-A	NR	3E-10		0.0475657	[0.033-0.062] unit decrease	Affymetrix [321169] (imputed)	N
623	chr4	5016882	5016883	rs11722554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.2	NR	rs11722554-?	NR	4E-11				Affymetrix [~ 8270000] (imputed)	N
623	chr4	5016882	5016883	rs11722554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p16.2	NR	rs11722554-?	NR	4E-18				Affymetrix [~ 8270000] (imputed)	N
623	chr4	5016882	5016883	rs11722554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.2		rs11722554-?	NR	2E-28				NR [~ 8900000] (imputed)	N
623	chr4	5016882	5016883	rs11722554	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4p16.2	NR	rs11722554-A	0.0377	1E-11		0.0334	[0.024-0.043] unit decrease	NR [~ 27400000] (imputed)	N
623	chr4	5019931	5019932	rs6446312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p16.2	CYTL1	rs6446312-C	NR	4E-10		0.0226589	[0.016-0.03] unit increase	Affymetrix [319769] (imputed)	N
623	chr4	5019931	5019932	rs6446312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs6446312-C	NR	5E-11		0.0238436	[0.017-0.031] unit increase	Affymetrix [319769] (imputed)	N
623	chr4	5019931	5019932	rs6446312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs6446312-C	NR	1E-11		0.0249199	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
623	chr4	5019931	5019932	rs6446312	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p16.2	CYTL1	rs6446312-C	NR	1E-8		0.020895	[0.014-0.028] unit increase	Affymetrix [321169] (imputed)	N
623	chr4	5019931	5019932	rs6446312	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.2		rs6446312-?	NR	1E-11				NR [~ 8900000] (imputed)	N
623	chr4	5034485	5034486	rs62291612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p16.2	NR	rs62291612-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
623	chr4	5034485	5034486	rs62291612	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p16.2	NR	rs62291612-?	NR	5E-14				Affymetrix [~ 8270000] (imputed)	N
623	chr4	5035586	5035587	rs6446315	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein CYTL1	5,351 Icelandic ancestry individuals	NA	4p16.2		rs6446315-G	0.1919	9E-46		0.310003	[0.27-0.35] unit increase	Illumina [7506463] (imputed)	N
623	chr4	5035586	5035587	rs6446315	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4p16.2	CYTL1	rs6446315-A	0.833	4E-11		0.028	[0.02-0.036] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
623	chr4	5052062	5052063	rs62291616	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.2	CYTL1	rs62291616-T	0.81375	1E-32	(CYTL1, 8402_22_3)	0.35379624	[0.3-0.41] unit decrease	Illumina [> 1000000] (imputed)	N
623	chr4	5098565	5098566	rs6838792	30636644	Nazarian A	2019-01-12	Alzheimers Res Ther	Genome-wide analysis of genetic predisposition to Alzheimer's disease and related sex disparities.	Alzheimer's disease	952 European ancestry male cases, 1,789 European ancestry female cases, 6,337 European ancestry male controls, 8,402 European ancestry female controls	NA	4p16.2	STK32B	rs6838792-?	NR	2E-6	(females)	1.2961394		Affymetrix, Illumina [2928658] (imputed)	N
623	chr4	5110139	5110140	rs6833812	23834954	Kobayashi D	2013-07-08	Mol Pain	Genome-wide association study of sensory disturbances in the inferior alveolar nerve after bilateral sagittal split ramus osteotomy.	Sensory disturbances after bilateral sagittal split ramus osteotomy	Up to 105 individuals	Up to 200 individuals	4p16.2	STK32B	rs6833812-?	NR	7E-6	(Hypoesthesia, Recessive)			Illumina [243229]	N
624	chr4	5128158	5128159	rs10937625	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	4p16.2	STK32B	rs10937625-T	0.7361	5E-10		1.25		Affymetrix [at least 416462] (imputed)	N
624	chr4	5153144	5153145	rs10516173	25461247	Lehmann DS	2015-02-01	Pharmacogenet Genomics	Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.	Response to abacavir-containing treatment in HIV-1 infection (virologic failure)	Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals	NA	4p16.2	NR	rs10516173-T	NR	5E-6	(phenotype 2)	2.85	[NR]	Illumina [> 8000000] (imputed)	N
624	chr4	5162388	5162389	rs13128441	23936387	Ostensson M	2013-08-02	PLoS One	A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.	Celiac disease	206 European ancestry trios	NA	4p16.2	STK32B	rs13128441-C		8E-6				Illumina [944512] (imputed)	N
624	chr4	5191067	5191068	rs73208958	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p16.2	Intergenic	rs73208958-A	0.6747	1E-10		0.0156	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
624	chr4	5191992	5191993	rs13127326	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.2	CYTL1	rs13127326-?	NR	9E-6	(uric acid)	0.17438027	[0.097-0.251] unit decrease	Affymetrix [at least 2500000] (imputed)	N
624	chr4	5199620	5199621	rs57228804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p16.2	Intergenic	rs57228804-C	0.6743	2E-11	(MTAG)	0.0128	[0.0091-0.0165] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
624	chr4	5199620	5199621	rs57228804	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p16.2	Intergenic	rs57228804-C	0.6743	5E-8		0.0114	[0.0073-0.0155] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
624	chr4	5204311	5204312	rs76500262	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p16.2	Intergenic	rs76500262-T	0.3341	5E-17	(MTAG)	0.0147	[0.011-0.018] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
624	chr4	5213587	5213588	rs73208983	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p16.2	NR	rs73208983-T	0.337	3E-9		0.00676596	[0.0045-0.009] unit decrease	NR [9732723] (imputed)	N
624	chr4	5220558	5220559	rs35121057	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p16.2	Intergenic	rs35121057-T	0.3433	3E-9	(MTAG)	0.0143	[0.0096-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
624	chr4	5221537	5221538	rs2008242	19389651	Smith JG	2009-02-15	Heart Rhythm	Genome-wide association study of electrocardiographic conduction measures in an isolated founder population: Kosrae.	Electrocardiographic conduction measures	1,262 Kosraen individuals	NA	4p16.2	MSX1	rs2008242-?	0.15	3E-6	(PR segment)			Affymetrix [338049]	N
624	chr4	5228938	5228939	rs1120924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.2		rs1120924-T	0.3362	3E-13		0.0108	[0.0079-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
624	chr4	5228938	5228939	rs1120924	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p16.2	Intergenic	rs1120924-T	0.3362	2E-16	(MTAG)	0.0114	[0.0087-0.0141] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
624	chr4	5231709	5231710	rs75834976	30049742	Terzikhan N	2018-07-26	Eur Respir J	Heritability and genome-wide association study of diffusing capacity of the lung.	Diffusing capacity of the lung for carbon monoxide traits	8,372 European ancestry individuals	NA	4p16.2	STK32B	rs75834976-A		6E-7	(DLCO per alveolar volume)	0.04	[0.024-0.056] unit decrease	Affymetrix, Illumina [NR]	N
624	chr4	5232751	5232752	rs34654885	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p16.2		rs34654885-A	0.3362	2E-13	(conditional-joint)	0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
624	chr4	5237152	5237153	rs78647349	23535033	Sherva R	2013-03-24	Alzheimers Dement	Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.	Alzheimer's disease (cognitive decline)	303 European ancestry cases		4p16.2	STK32B	rs78647349-?	0.04	5E-7		0.3	unit decrease	Illumina [NR] (imputed)	N
625	chr4	5318173	5318174	rs546172928	31476763	Otsuka I	2019-09-02	Neuropsychopharmacology	Genome-wide association studies identify polygenic effects for completed suicide in the Japanese population.	Age at suicide	719 Japanese ancestry individuals	NA	4p16.2	STK32B	rs546172928-T	NR	7E-7		6.23	[3.76-8.7] unit decrease	Illumina [8810873] (imputed)	N
625	chr4	5330309	5330310	rs71597752	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p16.2	NR	rs71597752-?	NR	2E-8				Illumina [7760689] (imputed)	N
626	chr4	5418484	5418485	rs2301857	33987465	Alfradique-Dunham I	2021-01-28	Neurol Genet	Genome-Wide Association Study Meta-Analysis for Parkinson Disease Motor Subtypes.	Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio)	3,212 European ancestry individuals	NA	4p16.2	STK32B	rs2301857-T	0.12	7E-7		0.19	[0.11-0.27] unit decrease	Illumina [14638245] (imputed)	N
626	chr4	5433324	5433325	rs142422484	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4p16.2	NR	rs142422484-?	NR	7E-6		0.4769	[0.27-0.69] unit increase	Illumina [at least 560000] (imputed)	N
626	chr4	5434601	5434602	rs73211192	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	4p16.2	STK32B	rs73211192-?		2E-6	(corrected for APOE4 status and baseline cortical amyloid)	0.05	[NR] unit decrease	Illumina [5137218] (imputed)	N
626	chr4	5440082	5440083	rs3774830	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4p16.2	STK32B	rs3774830-?	NR	3E-6		0.116	[0.061-0.171] unit decrease	Illumina [at least 13000000] (imputed)	N
627	chr4	5521207	5521208	rs139990382	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p16.2	C4orf6	rs139990382-T	0.00864705389566012	5E-6	(G_Coprococcus_HB)	1.72149	[0.98-2.46] unit decrease	Illumina [7711310] (imputed)	N
627	chr4	5577985	5577986	rs112554914	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p16.2		rs112554914-?	NR	4E-9				Illumina [1128286]	N
627	chr4	5636072	5636073	rs186725382	31217265	Sliz E	2019-06-19	J Med Genet	Genome-wide association study identifies seven novel loci associating with circulating cytokines and cell adhesion molecules in Finns.	Vascular endothelial growth factor levels	13,577 Finnish ancestry individuals	NA	4p16.2	STK32B	rs186725382-A	0.001	5E-10		2.38	unit decrease	Illumina [NR] (imputed)	N
628	chr4	5636311	5636312	rs140854723	31220337	Carr DF	2019-06-20	Clin Pharmacol Ther	Genome-wide association study of statin-induced myopathy in patients recruited using the UK clinical practice research datalink.	Simvastatin-induced myopathy	85 European ancestry cases, 2,501 controls	NA	4p16.2	EVC2	rs140854723-?	NR	1E-6		66.1	[10.6-414.0]	Illumina [654642] (imputed)	N
628	chr4	5679420	5679421	rs73200114	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p16.2	NR	rs73200114-?	NR	1E-8				Illumina [7760689] (imputed)	N
628	chr4	5711367	5711368	rs3774854	28044437	McDonald MN	2017-01-02	J Cachexia Sarcopenia Muscle	Body mass index change in gastrointestinal cancer and chronic obstructive pulmonary disease is associated with Dedicator of Cytokinesis 1.	Body mass index (change over time) in gastrointestinal cancer or chronic obstructive pulmonary disease	237 COPD cases, 204 GI cancer cases	NA	4p16.2	EVC2	rs3774854-?		1E-6		0.05	[0.028-0.072] unit increase	Affymetrix [418365]	N
628	chr4	5724917	5724918	rs866118481	34586716	Chen J	2021-09-29	Mol Genet Genomic Med	Heritability and genome-wide association study of blood pressure in Chinese adult twins.	Systolic blood pressure	137 Chinese ancestry twins	NA	4p16.2		rs866118481-?	NR	4E-6				Illumina [7401356] (imputed)	N
629	chr4	5769225	5769226	rs183275998	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.2	EVC	rs183275998-C	0.2842	8E-11		0.0138	[0.0097-0.0179] unit increase	Affymetrix [18391927] (imputed)	N
629	chr4	5783385	5783386	rs57829920	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p16.2	EVC	rs57829920-?		2E-9				Affymetrix, Illumina [NR] (imputed)	N
629	chr4	5800493	5800494	rs2279252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p16.2		rs2279252-A	NR	1E-14		0.0328	[0.024-0.041] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
629	chr4	5800493	5800494	rs2279252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	150,266 East Asian ancestry individuals	NA	4p16.2		rs2279252-A	0.094327	2E-8		0.0272026	[0.018-0.037] unit decrease	Illumina [13478778] (imputed)	N
629	chr4	5800493	5800494	rs2279252	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4p16.2		rs2279252-A	NR	2E-10		0.0357	[0.025-0.047] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
629	chr4	5800493	5800494	rs2279252	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Serum alkaline phosphatase levels	390,964 European ancestry individuals	105,030 East Asian ancestry individuals	4p16.2	EVC	rs2279252-G	0.99	7E-9		5.79	z-score increase	Affymetrix [4311822] (imputed)	N
629	chr4	5803113	5803114	rs150512710	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	4p16.2	NR	rs150512710-?		2E-6		35.9753	[21.29-50.66] unit decrease	NR [NR] (imputed)	N
629	chr4	5841349	5841350	rs16837723	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip and palate	98 Asian ancestry cases, 199 European ancestry cases, 340 Hispanic cases, 1 case, 1,626 controls	NA	4p16.2	NR	rs16837723-?		1E-6		0.54	[0.42-0.69]	Illumina [539473] (imputed)	N
629	chr4	5849820	5849821	rs7675861	26116289	Raginis-Zborowska A	2015-06-24	Exp Gerontol	Genetic determinants of swallowing impairments among community dwelling older population.	Dysphagia	71 European ancestry older adult cases, 484 European ancestry older adult controls	NA	4p16.2	NR	rs7675861-?	NR	3E-6		2.885	[NR]	Illumina [4196861] (imputed)	N
629	chr4	5857252	5857253	rs78226944	29855589	Chernus J	2018-05-31	Sci Rep	GWAS reveals loci associated with velopharyngeal dysfunction.	Velopharyngeal dysfunction	54 Hispanic or Latin American and unknown ancestry cases, 922 Hispanic or Latin American and unknown ancestry controls	NA	4p16.2	NR	rs78226944-?	NR	1E-6		0.09373566	[NR] unit decrease	Illumina [at least 269494] (imputed)	N
629	chr4	5883764	5883765	rs10937687	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.2		rs10937687-G	0.41	3E-12		6.99	z score increase	Affymetrix [9061022] (imputed)	N
629	chr4	5889339	5889340	rs28475438	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p16.2		rs28475438-A	0.33	4E-12		6.94	z score increase	Affymetrix [9061022] (imputed)	N
629	chr4	5889339	5889340	rs28475438	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p16.2	CRMP1	rs28475438-?		6E-9				NR [7428630] (imputed)	N
629	chr4	5892180	5892181	rs3755855	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p16.2	NR	rs3755855-G	0.4627	8E-10				NR [9056863] (imputed)	N
630	chr4	5930032	5930033	rs4333127	23720494	Evans DM	2013-05-29	Hum Mol Genet	Genome-wide association study identifies loci affecting blood copper, selenium and zinc.	Blood trace element (Zn levels)	2,603 European ancestry individuals	NA	4p16.2	CRMP1, FLJ46481	rs4333127-?	NR	3E-6		0.218	[0.13-0.31] unit increase	Illumina [> 2500000] (imputed)	N
630	chr4	5931384	5931385	rs6839824	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.2	CRMP1	rs6839824-?	NR	4E-6	(sucrose)	0.17974555	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
630	chr4	5936874	5936875	rs11945109	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.2	CRMP1	rs11945109-?	NR	6E-6	(TAG 58:10)	0.18112129	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
630	chr4	5957120	5957121	rs6824475	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Systolic blood pressure	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4p16.2	FLJ46481	rs6824475-A	0.02	8E-7	(EA)	1.04	[0.63-1.45] unit increase	Illumina [up to 13042663] (imputed)	N
630	chr4	5976103	5976104	rs6835174	25987507	Minica CC	2015-05-19	Behav Genet	Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset.	Cannabis use (initiation)	1,357 European ancestry users, 5,387 European ancestry never users	NA	4p16.2	NR	rs6835174-T	NR	3E-6		0.34	[0.2-0.48] unit increase	NR [5896100] (imputed)	N
630	chr4	6018890	6018891	rs4689318	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	4p16.1	intergenic	rs4689318-?	NR	7E-6	(Recessive model)	0.74	unit decrease	Illumina [542562]	N
630	chr4	6023253	6023254	rs4355331	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		4p16.1	NR	rs4355331-G	NR	4E-6		0.260034	[0.15-0.37] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
631	chr4	6058496	6058497	rs16838131	22566498	Turner ST	2012-05-07	Hypertension	Genomic association analysis identifies multiple loci influencing antihypertensive response to an angiotensin II receptor blocker.	Response to angiotensin II receptor blocker therapy	198 European ancestry hypertensive individuals, 193 African American hypertensive individuals	NA	4p16.1	JAKMIP1	rs16838131-A	NR	2E-6	(AA)	2.26	[1.01-3.51] unit decrease	Affymetrix [~ 2300000] (imputed)	N
631	chr4	6126143	6126144	rs11722856	33426524	Ramanan VK	2020-09-26	Brain Commun	Variants in <i>PPP2R2B</i> and <i>IGF2BP3</i> are associated with higher tau deposition.	Tau burden	754 European ancestry individuals	NA	4p16.1	JAKMIP1	rs11722856-A	0.016	4E-7		0.17	NR unit increase	Illumina [6417232] (imputed)	N
631	chr4	6159802	6159803	rs7666392	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in excessive alcohol consumption	951 individuals	NA	4p16.1	NR	rs7666392-?	NR	3E-6		0.3102	[0.18-0.44] unit increase	Illumina [~ 7800000] (imputed)	N
632	chr4	6171229	6171230	rs78031527	29695241	Charmet R	2018-04-25	Cardiovasc Diabetol	Novel risk genes identified in a genome-wide association study for coronary artery disease in patients with type 1 diabetes.	Coronary artery disease in type 1 diabetes	434 European ancestry cases with coronary artery disease, 3,123 European ancestry cases without coronary artery disease	585 cases with coronary artery disease, 2,612 cases without coronary artery disease	4p16.1	JAKMIP1	rs78031527-T	0.201	5E-6	(EA)	1.7	[NR]	Illumina [6728637] (imputed)	N
632	chr4	6177134	6177135	rs4689355	26031901	Dahlin A	2015-06-02	Pharmacogenomics J	Genome-wide association study of leukotriene modifier response in asthma.	Response to zileuton treatment in asthma (FEV1 change interaction)	160 European and other ancestry zileuton-treated cases, 144 European and other ancestry placebo-controlled cases	149 European and other ancestry zileuton-treated cases, 73 European and other ancestry placebo-controlled cases	4p16.1	JAKMIP1	rs4689355-?	NR	5E-7	(Recessive model)	0.61	unit increase	Illumina [542562]	N
632	chr4	6177621	6177622	rs10029971	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella sp900318625 abundance in stool	5,959 Finnish ancestry individuals	NA	4p16.1		rs10029971-A	0.210489	4E-8		0.0710724	[0.046-0.096] unit increase	Illumina [7980478] (imputed)	N
632	chr4	6179712	6179713	rs13102430	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella sp002437285 abundance in stool	5,959 Finnish ancestry individuals	NA	4p16.1		rs13102430-A	0.20463	5E-9		0.102422	[0.068-0.137] unit increase	Illumina [7980478] (imputed)	N
632	chr4	6183183	6183184	rs10937705	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p16.1	NR	rs10937705-G	0.779354751351351	4E-6	(IGP20)	0.1717	[0.099-0.244] unit decrease	Illumina [~ 2500000] (imputed)	N
632	chr4	6207105	6207106	rs73200278	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Bacteroides intestinalis A abundance in stool	5,959 Finnish ancestry individuals	NA	4p16.1		rs73200278-C	0.0127663	1E-8		0.453451	[0.3-0.61] unit increase	Illumina [7980478] (imputed)	N
632	chr4	6210295	6210296	rs7349694	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	4p16.1	NR	rs7349694-?	NR	2E-6		0.045909	[0.027-0.065] unit increase	Affymetrix [9658292] (imputed)	N
632	chr4	6270055	6270056	rs4689388	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4p16.1	WFS1	rs4689388-A	0.6193	8E-15	(EA)	0.0835	[0.063-0.104] unit increase	Affymetrix, Illumina [NR] (imputed)	N
632	chr4	6270055	6270056	rs4689388	28869590	Zhao W	2017-09-04	Nat Genet	Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.	Type 2 diabetes	6,353 South Asian ancestry cases, 7,179 South Asian ancestry controls, 3,871 European ancestry cases, 16,427 European ancestry controls, 34,840 cases, 114,981 controls	7,888 South Asian ancestry cases, 20,679 South Asian ancestry controls, 387 European ancestry cases, 2,092 European ancestry controls, 19,998 East Asian ancestry cases, 30,983 East Asian ancestry controls	4p16.1	WFS1	rs4689388-A	0.6193	1E-15		0.075	[0.057-0.093] unit increase	Affymetrix, Illumina [NR] (imputed)	N
632	chr4	6270055	6270056	rs4689388	19734900	Rung J	2009-09-06	Nat Genet	Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.	Type 2 diabetes	679 European ancestry cases, 697 European ancestry controls	5,579 European ancestry cases, 7,096 European ancestry controls	4p16.1	PPP2R2C, WFS1	rs4689388-T	0.57	1E-8		1.16	[1.10-1.21]	Illumina [392365]	N
632	chr4	6276125	6276126	rs4996963	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Mild age-related type 2 diabetes	2,861 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	4p16.1	WFS1	rs4996963-A	0.43466	8E-6		1.21	[1.113 - 1.317]	Illumina [5397657] (imputed)	N
632	chr4	6276629	6276630	rs62283056	28039263	Wheeler HE	2016-12-30	Clin Cancer Res	Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity.	Cisplatin-induced ototoxicity	511 European ancestry testicular cancer survivor individuals	238 children	4p16.1	WFS1	rs62283056-C	NR	5E-8		5.438	z score decrease	Illumina [5060354] (imputed)	N
632	chr4	6283252	6283253	rs9997824	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4p16.1	NR	rs9997824-C	NR	3E-11		0.0172	[0.012-0.022] unit increase	Affymetrix [9000000] (imputed)	N
632	chr4	6289985	6289986	rs4458523	24509480	Mahajan A	2014-02-09	Nat Genet	Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.	Type 2 diabetes	12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls	21,491 European ancestry cases, 55,647 European ancestry controls	4p16.1	WFS1	rs4458523-G	0.59	2E-9		1.09	[1.06-1.13]	Affymetrix, Illumina [2500000] (imputed)	N
632	chr4	6289985	6289986	rs4458523	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	4p16.1	WFS1	rs4458523-G	0.573657632191931	2E-15		1.1	[1.07-1.12]	Affymetrix, Illumina [up to 2500000] (imputed)	N
632	chr4	6291002	6291003	rs4689394	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p16.1		rs4689394-G	NR	9E-15		0.018	[0.013-0.023] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
633	chr4	6295063	6295064	rs10755148	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 290,641 European ancestry controls, 30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4p16.1		rs10755148-G	NR	7E-21		0.1127	[0.089-0.136] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
633	chr4	6295063	6295064	rs10755148	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (drugs used in diabetes)	15,272 European ancestry cases, 29,0641 European ancestry controls	NA	4p16.1	WFS1	rs10755148-A	0.359115	4E-20		0.1111882	[0.087-0.135] unit decrease	Affymetrix [7288503] (imputed)	N
633	chr4	6301057	6301058	rs12642481	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	High density lipoprotein cholesterol levels	2,732 Kuwaiti ancestry individuals	NA	4p16.1	WFS1	rs12642481-?	NR	7E-8		5.403	NR unit decrease	Illumina [up to 1520000] (imputed)	N
633	chr4	6301458	6301459	rs111064828	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	4p16.1		rs111064828-A	NR	5E-11		0.0167	[0.012-0.022] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
633	chr4	6302518	6302519	rs1801212	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Type 2 diabetes	approximately 459,000 European ancestry individuals	NA	4p16.1		rs1801212-?	NR	3E-18				NR [~ 8900000] (imputed)	N
633	chr4	6302518	6302519	rs1801212	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.1	WFS1	rs1801212-A	0.7087	5E-6		1.05	[1.03-1.07]	Affymetrix, Illumina [~ 27000000] (imputed)	N
633	chr4	6302518	6302519	rs1801212	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	4p16.1	WFS1	rs1801212-A	0.71	2E-17		1.06	[1.05-1.08]	Affymetrix, Illumina [247470]	N
633	chr4	6302518	6302519	rs1801212	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes (adjusted for BMI)	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	4p16.1	WFS1	rs1801212-A	0.748	7E-21		1.07	[1.05-1.08]	Affymetrix, Illumina [247470]	N
633	chr4	6302518	6302519	rs1801212	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	up to 48,286 European ancestry cases, up to 250,671 European ancestry controls	NA	4p16.1	WFS1	rs1801212-A	0.71	7E-20		1.07	[1.05-1.09]	Affymetrix, Illumina [247470]	N
633	chr4	6302518	6302519	rs1801212	29632382	Mahajan A	2018-04-09	Nat Genet	Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.	Type 2 diabetes	48,286 European ancestry cases, 250,671 European ancestry controls, 33,126 African American, East Asian, Hispanic/Latino or South Asian cases, 120,161 African American, East Asian, Hispanic/Latino or South Asian controls	NA	4p16.1	WFS1	rs1801212-A	0.748	1E-24		1.07	[1.06-1.09]	Affymetrix, Illumina [247470]	N
633	chr4	6303021	6303022	rs1801214	33657282	Liu X	2021-03-03	Aging Cell	Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals.	Longevity	11,045 Chinese ancestry individuals	NA	4p16.1	NR	rs1801214-C	NR	2E-7		0.2645	[0.16-0.36] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
633	chr4	6303021	6303022	rs1801214	30054458	Xue A	2018-07-27	Nat Commun	Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.	Type 2 diabetes	61,714 European ancestry cases, 1,178 Pakistani ancestry cases, 593,952 European ancestry controls, 2,472 Pakistani ancestry controls	NA	4p16.1	WFS1	rs1801214-C	0.400415373416361	6E-34		0.0903	[0.076-0.105] unit decrease	NR [5035015] (imputed)	N
633	chr4	6303021	6303022	rs1801214	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	4p16.1	WFS1	rs1801214-T	NR	5E-7	(female)	1.09	[1.05-1.13]	Affymetrix, Illumina [up to 2500000] (imputed)	N
633	chr4	6303021	6303022	rs1801214	22885922	Morris AP	2012-09-01	Nat Genet	Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes.	Type 2 diabetes	6,377 European ancestry male cases, 5,794 European ancestry female cases, 22,243 European ancestry male controls, 34,619 European ancestry female controls	12,938 European ancestry male cases, 8,553 European ancestry female cases, 904 Pakistani ancestry male cases, 274 Pakistani ancestry female cases, 30,273 European ancestry male controls, 25,374 European ancestry female controls, 2,088 Pakistani ancestry male controls, 384 Pakistani ancestry female controls	4p16.1	WFS1	rs1801214-T	NR	3E-12	(men)	1.11	[1.08-1.15]	Affymetrix, Illumina [up to 2500000] (imputed)	N
633	chr4	6303021	6303022	rs1801214	20581827	Voight BF	2010-06-27	Nat Genet	Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.	Type 2 diabetes	8,130 European ancestry cases, 38,987 European ancestry controls	Up to 34,412 European ancestry cases, 59,925 European ancestry controls	4p16.1	WFS1	rs1801214-T		3E-8		1.13	[1.08-1.18]	Affymetrix, Illumina [2426886] (imputed)	N
633	chr4	6303353	6303354	rs734312	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4p16.1	NR	rs734312-A	NR	4E-11		0.0162	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
633	chr4	6303730	6303731	rs147834269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4p16.1		rs147834269-A	0.046562346	2E-21		0.24339512	[0.19-0.29] unit decrease	Illumina [13429769] (imputed)	N
633	chr4	6303730	6303731	rs147834269	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (drugs used in diabetes)	30,515 East Asian ancestry cases, 148,211 East Asian ancestry controls	NA	4p16.1		rs147834269-A	0.044816153	1E-13		0.20271079	[0.15-0.26] unit decrease	Illumina [13134967] (imputed)	N
633	chr4	6303730	6303731	rs147834269	32499647	Spracklen CN	2020-05-06	Nature	Identification of type 2 diabetes loci in 433,540 East Asian individuals.	Type 2 diabetes	77,418 East Asian cases, 356,122 East Asian controls	NA	4p16.1	WFS1	rs147834269-G	0.978	9E-12		1.23	[1.16-1.30]	Affymetrix, Illumina [11800000] (imputed)	N
633	chr4	6304086	6304087	rs1046316	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Type 2 diabetes	38,841 European ancestry cases, 451,248 European ancestry controls, 45,383 East Asian ancestry cases, 132,032 East Asian ancestry controls	NA	4p16.1		rs1046316-G	NR	2E-30		0.0999	[0.083-0.117] unit increase	Affymetrix, Illumina [25845091] (imputed)	N
633	chr4	6304285	6304286	rs1046319	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.1	PPP2R2C	rs1046319-?	NR	7E-6	(CE 16:0)	0.1732991	[0.098-0.249] unit increase	Affymetrix [at least 2500000] (imputed)	N
633	chr4	6306762	6306763	rs10937721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p16.1	NR	rs10937721-G	0.412	6E-70		0.0835	[0.074-0.093] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
633	chr4	6306762	6306763	rs10937721	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p16.1	NR	rs10937721-G	0.3904	7E-70		0.0755	[0.067-0.084] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
633	chr4	6306762	6306763	rs10937721	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p16.1	WFS1	rs10937721-C	0.588	2E-8		1.06	[1.04-1.08]	Affymetrix, Illumina [~ 27000000] (imputed)	N
633	chr4	6316380	6316381	rs4234733	29358691	Bonas-Guarch S	2018-01-22	Nat Commun	Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.	Type 2 diabetes	19,693 European ancestry cases, 107,308 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls		4p16.1	WFS1	rs4234733-A	NR	7E-8		1.0902424		Affymetrix, Illumina [1918233] (imputed)	N
633	chr4	6316919	6316920	rs4688992	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4p16.1	NR	rs4688992-G	NR	2E-10		0.0165	[0.011-0.022] unit increase	Affymetrix [9000000] (imputed)	N
633	chr4	6319865	6319866	rs7680206	34941638	Avasthi KK	2021-12-08	Pediatr Rep	Identification of Novel Genomic Variations in Susceptibility to Nonsyndromic Cleft Lip and Palate Patients.	Nonsyndromic cleft lip with or without cleft palate	86 Indian ancestry cases, 10 Indian ancestry controls	NA	4p16.1		rs7680206-?	NR	2E-7				Affymetrix [810906]	N
633	chr4	6327113	6327114	rs139694693	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Scarlet fever	6,812 European ancestry cases, 113,837 European ancestry controls	NA	4p16.1	NR	rs139694693-?	NR	7E-6		1.1655	[0.59-1.74] unit increase	Illumina [at least 560000] (imputed)	N
633	chr4	6333668	6333669	rs35678078	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	46,511 Asian ancestry cases, 169,776 Asian ancestry controls	NA	4p16.1	NR	rs35678078-G	0.4962	2E-8		0.0587	[0.038-0.079] unit decrease	Affymetrix, Illumina [1077427] (imputed)	N
633	chr4	6333668	6333669	rs35678078	30718926	Suzuki K	2019-02-04	Nat Genet	Identification of 28 new susceptibility loci for type 2 diabetes in the Japanese population.	Type 2 diabetes	36,614 Japanese ancestry cases, 155,150 Japanese ancestry controls	NA	4p16.1	WFS1	rs35678078-T	0.5	2E-8		1.06	1.04-1.08	Illumina [12557761] (imputed)	N
633	chr4	6388190	6388191	rs4689428	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on Terminally Differentiated CD8+ T cell	2,911 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p16.1		rs4689428-G	0.20579	4E-8		0.1861	[0.12-0.25] unit decrease	Illumina [17945853] (imputed)	N
633	chr4	6388190	6388191	rs4689428	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD3 on CD28- CD8+ T cell	2,919 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p16.1		rs4689428-G	0.20539	4E-8		0.186	[0.12-0.25] unit decrease	Illumina [17954450] (imputed)	N
634	chr4	6431083	6431084	rs11942139	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4p16.1	NR	rs11942139-?	NR	7E-7	(AA)	20.86	[18.88-22.84]	Illumina [905956]	N
634	chr4	6488421	6488422	rs146588540	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein BRPF1	5,349 Icelandic ancestry individuals	NA	4p16.1		rs146588540-T	0.01043	3E-12		0.135871	[0.098-0.174] unit increase	Illumina [7506463] (imputed)	N
634	chr4	6490517	6490518	rs111776656	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	4p16.1	PPP2R2C	rs111776656-G	NR	2E-6		0.02764	[0.016-0.039] unit increase	Illumina [NR] (imputed)	N
634	chr4	6497377	6497378	rs4624724	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p16.1	NR	rs4624724-?	NR	4E-8				Affymetrix [NR]	N
634	chr4	6518045	6518046	rs3934547	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.1	MAN2B2	rs3934547-?	NR	7E-6	(PC 34:3)	0.30004132	[0.17-0.43] unit increase	Affymetrix [at least 2500000] (imputed)	N
634	chr4	6525490	6525491	rs7676737	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stem cell factor levels	8,290 Finnish ancestry individuals	NA	4p16.1	NR	rs7676737-C		5E-6		0.0717	[0.041-0.103] SD units decrease	NR [10700000] (imputed)	N
634	chr4	6546432	6546433	rs9654056	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	4p16.1	PPP2R2C	rs9654056-?	NR	9E-6	(Total power, Cz)	0.098	[0.055-0.141] unit decrease	Illumina [527829]	N
635	chr4	6596551	6596552	rs2301793	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein MAN2B2	5,350 Icelandic ancestry individuals	NA	4p16.1		rs2301793-C	0.4431	2E-62		0.289821	[0.26-0.32] unit increase	Illumina [7506463] (imputed)	N
635	chr4	6598183	6598184	rs17724993	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.1	MAN2B2	rs17724993-G	0.433125	6E-44	(MAN2B2, 9251_28_3)	0.34612232	[0.3-0.39] unit increase	Illumina [> 1000000] (imputed)	N
635	chr4	6600011	6600012	rs2301790	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.1	MAN2B2	rs2301790-G	0.484	1E-44	(Epididymis-specific alpha-mannosidase, MAN2B2.9251.28.3)	0.33	[0.29-0.37] unit increase	Affymetrix [10572788] (imputed)	N
636	chr4	6686071	6686072	rs11947482	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Thyroid cancer	762 European ancestry cases, 410,350 European ancestry controls	NA	4p16.1		rs11947482-T	NR	6E-8		6.257822	NR	Affymetrix [7846216] (imputed)	N
636	chr4	6697765	6697766	rs3822262	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	S100P	rs3822262-C	0.363	3E-6	(Total energy expenditure RQ)	0.03	[NR] unit increase	Illumina [899892]	N
636	chr4	6729280	6729281	rs73211754	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p16.1		rs73211754-?	NR	2E-11				NR [~ 8900000] (imputed)	N
636	chr4	6736364	6736365	rs7661864	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p16.1	NR	rs7661864-G	0.699190685672515	5E-6	(IGP52)	0.3307	[0.19-0.47] unit increase	Illumina [~ 2500000] (imputed)	N
636	chr4	6755032	6755033	rs12650244	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.1		rs12650244-T	0.121969	4E-11		0.022844994	[0.016-0.03] unit increase	Affymetrix [93095623] (imputed)	N
636	chr4	6761052	6761053	rs10222981	30514930	Mukherjee S	2018-12-04	Mol Psychiatry	Genetic data and cognitively defined late-onset Alzheimer's disease subgroups.	Alzheimer's disease with language domain impairment	Up to 510 European ancestry cases, 3,447 European ancestry controls	NA	4p16.1	NR	rs10222981-T	0.08	1E-6		2.06	[1.77-2.35]	NR [up to 6398204] (imputed)	N
636	chr4	6773846	6773847	rs10033106	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.1	CNO	rs10033106-?	NR	2E-6	(3-methyladipate; pimelate)	0.2351466	[0.14-0.33] unit increase	Affymetrix [at least 2500000] (imputed)	N
637	chr4	6833279	6833280	rs116723815	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein GLT8D1	5,362 Icelandic ancestry individuals	NA	4p16.1		rs116723815-C	0.009813	2E-16		0.157159	[0.12-0.19] unit increase	Illumina [7506463] (imputed)	N
637	chr4	6857277	6857278	rs6836941	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4p16.1	NR	rs6836941-?	NR	3E-9		0.02622	[0.018-0.035] unit decrease novel	Illumina [6108953] (imputed)	N
637	chr4	6883011	6883012	rs3733606	25705162	Oh JH	2014-12-31	Genomics Inform	Genome-wide association study identifies candidate Loci associated with platelet count in koreans.	Platelet count	8,842 Korean ancestry individuals	7,861 Korean ancestry individuals	4p16.1	KIAA0232	rs3733606-G	0.5	1E-10		5.65	[3.73-7.57] unit decrease	Affymetrix [2152228] (imputed)	N
637	chr4	6890936	6890937	rs7675928	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA	4p16.1	intergenic	rs7675928-T	0.064	7E-6				Illumina [331281]	N
637	chr4	6891434	6891435	rs11734099	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p16.1		rs11734099-A	NR	4E-75		0.0427	[0.038-0.047] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
637	chr4	6891434	6891435	rs11734099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet distribution width	408,112 British individuals	NA	4p16.1		rs11734099-A	0.176789	1E-94		0.061118197	[0.055-0.067] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr4	6891434	6891435	rs11734099	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.1		rs11734099-A	0.176787	2E-265		0.10309556	[0.097-0.109] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr4	6891434	6891435	rs11734099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs11734099-G	0.825734	6E-361				Affymetrix, Illumina [17210439] (imputed)	N
637	chr4	6891434	6891435	rs11734099	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p16.1	NR	rs11734099-G	0.823513	4E-357		0.102101	[0.097-0.107] SD unit increase	Affymetrix, Illumina [49660172] (imputed)	N
637	chr4	6891434	6891435	rs11734099	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet count	166,066 European ancestry individuals	NA	4p16.1	intergenic	rs11734099-A	0.176	7E-33		0.0574289	[0.048-0.067] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr4	6891454	6891455	rs11731274	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Platelet count	235,256 European ancestry individuals	100,764 European ancestry individuals	4p16.1		rs11731274-T	0.824	3E-43				Affymetrix [10369434] (imputed)	N
637	chr4	6891454	6891455	rs11731274	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p16.1		rs11731274-G	0.177105	6E-56		0.046641327	[0.041-0.052] unit increase	Affymetrix [93095623] (imputed)	N
637	chr4	6891454	6891455	rs11731274	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs11731274-G	0.254308	4E-105				Affymetrix, Illumina [24588908] (imputed)	N
637	chr4	6891454	6891455	rs11731274	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p16.1	NR	rs11731274-G	0.177171	6E-93		0.049872	[0.045-0.055] SD unit increase	Affymetrix, Illumina [50241410] (imputed)	N
637	chr4	6891454	6891455	rs11731274	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Platelet distribution width	164,433 European ancestry individuals	NA	4p16.1	intergenic	rs11731274-G	0.1761	8E-50		0.07029503	[0.061-0.08] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr4	6891454	6891455	rs11731274	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4p16.1	intergenic	rs11731274-G	0.1761	4E-97		0.09967167	[0.09-0.109] unit decrease	Affymetrix [~ 2500000] (imputed)	N
637	chr4	6891518	6891519	rs11734132	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red cell distribution width	approximately 445,000 European ancestry individuals	NA	4p16.1		rs11734132-?	NR	3E-11				NR [~ 8900000] (imputed)	N
637	chr4	6891518	6891519	rs11734132	24026423	Shameer K	2013-09-12	Hum Genet	A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.	Mean platelet volume	6,291 European ancestry individuals	NA	4p16.1	KIAA0232	rs11734132-G	NR	6E-7		0.1	[NR] unit increase	Illumina [476395]	N
637	chr4	6891518	6891519	rs11734132	22139419	Gieger C	2011-11-30	Nature	New gene functions in megakaryopoiesis and platelet formation.	Mean platelet volume	13,106 European ancestry individuals, 1,652 Val Borbera (founder/genetic isolate) individuals, 593 Carlantino (founder/genetic isolate) individuals, 1,146 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,213 South Tyrolean (founder/genetic isolate) individuals, 890 Sorbian (founder/genetic isolate) individuals	Up to 16,960 European ancestry individuals, 855 Cliento (founder/genetic isolate) individuals, 1,023 Talana (founder/genetic isolate) individuals	4p16.1	KIAA0232	rs11734132-G	NR	1E-11		0.011	[0.0071-0.0149] ln(fl) increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
637	chr4	6893180	6893181	rs12640189	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Lymphocyte counts	524,923 European ancestry individuals	NA	4p16.1	NR	rs12640189-T	0.175849	3E-10		0.016369	[0.011-0.021] SD unit increase	Affymetrix, Illumina [50265552] (imputed)	N
637	chr4	6906075	6906076	rs7687708	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil counts	408,112 British individuals	NA	4p16.1	TBC1D14	rs7687708-G	0.218993	9E-10		0.016556729	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr4	6906098	6906099	rs7682697	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p16.1	TBC1D14	rs7682697-T	0.223667	1E-9		0.016317299	[0.011-0.022] unit increase	Affymetrix [93095623] (imputed)	N
637	chr4	6906098	6906099	rs7682697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p16.1		rs7682697-?	NR	7E-9				NR [~ 8900000] (imputed)	N
637	chr4	6910334	6910335	rs62291089	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.1	TBC1D14	rs62291089-G	0.193452	2E-27		0.03262531	[0.027-0.039] unit increase	Affymetrix [93095623] (imputed)	N
637	chr4	6918678	6918679	rs10937762	34155719	Margaritte-Jeannin P	2021-06-22	Clin Exp Allergy	Identification of OCA2 as a novel locus for the co-morbidity of asthma-plus-eczema.	Asthma and eczema	1,208 European ancestry cases with both asthma and eczema, 7,599 European ancestry controls with neither asthma nor eczema	NA	4p16.1	TBC1D14, KIAA0232, CCDC96	rs10937762-G	0.495	6E-6		0.244	[0.14-0.35] unit decrease	Illumina [NR] (imputed)	N
637	chr4	6919660	6919661	rs10804990	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4p16.1		rs10804990-A	NR	1E-10		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
637	chr4	6919660	6919661	rs10804990	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil count	234,802 European ancestry individuals	100,556 European ancestry individuals	4p16.1		rs10804990-G	0.381	2E-10				Affymetrix [10369434] (imputed)	N
637	chr4	6919660	6919661	rs10804990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs10804990-A	0.60639	1E-12				Affymetrix, Illumina [24246363] (imputed)	N
637	chr4	6919660	6919661	rs10804990	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4p16.1	NR	rs10804990-A	0.617304	3E-12		0.013185	[0.0095-0.0169] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
637	chr4	6919673	6919674	rs7668673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p16.1		rs7668673-T	NR	1E-13		0.0159	[0.012-0.02] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
637	chr4	6919673	6919674	rs7668673	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4p16.1		rs7668673-T	NR	2E-16		0.0193	[0.015-0.024] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
637	chr4	6919673	6919674	rs7668673	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil percentage of white cells	408,112 British individuals	NA	4p16.1	TBC1D14	rs7668673-T	0.281315	9E-13		0.017716305	[0.013-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
637	chr4	6919831	6919832	rs10937763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p16.1	TBC1D14	rs10937763-G	0.620254	6E-9		0.013415542	[0.0089-0.0179] unit increase	Affymetrix [93095623] (imputed)	N
637	chr4	6919831	6919832	rs10937763	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p16.1	TBC1D14	rs10937763-G	0.620165	2E-18		0.020433119	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
637	chr4	6921423	6921424	rs10937764	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4p16.1	TBC1D14	rs10937764-C	0.9035	8E-18		0.0538722	[0.042-0.066] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr4	6924796	6924797	rs116383353	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean platelet volume	164,454 European ancestry individuals	NA	4p16.1	TBC1D14	rs116383353-A	0.1292	1E-12		0.04087826	[0.03-0.052] unit increase	Affymetrix [~ 2500000] (imputed)	N
637	chr4	6941692	6941693	rs4234790	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p16.1	TBC1D14	rs4234790-C	NR	4E-8		0.0154617	[0.0099-0.021] unit decrease	Affymetrix [321016] (imputed)	N
637	chr4	6943359	6943360	rs28425595	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Neutrophil-to-lymphocyte ratio	234,502 European ancestry individuals	100,442 European ancestry individuals	4p16.1		rs28425595-C	0.633	1E-8				Affymetrix [10369434] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p16.1	TBC1D14	rs6831368-G	0.361644	7E-16		0.018620845	[0.014-0.023] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4p16.1	TBC1D14	rs6831368-G	0.361672	1E-19		0.02099369	[0.016-0.026] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Lymphocyte percentage of white cells	408,112 British individuals	NA	4p16.1	TBC1D14	rs6831368-G	0.361715	4E-19		0.020533057	[0.016-0.025] unit increase	Affymetrix [93095623] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs6831368-G	0.375444	4E-24				Affymetrix, Illumina [24649327] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	562,243 European ancestry individuals	NA	4p16.1	NR	rs6831368-G	0.362358	2E-25		0.019985	[0.016-0.024] SD unit decrease	Affymetrix, Illumina [50601830] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs6831368-G	0.372401	2E-24				Affymetrix, Illumina [23114412] (imputed)	N
638	chr4	6969918	6969919	rs6831368	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	519,288 European ancestry individuals	NA	4p16.1	NR	rs6831368-G	0.362388	4E-27		0.021595	[0.018-0.026] SD unit decrease	Affymetrix, Illumina [50250472] (imputed)	N
638	chr4	6969918	6969919	rs6831368	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p16.1		rs6831368-?	NR	1E-14				NR [~ 8900000] (imputed)	N
638	chr4	6978726	6978727	rs10013696	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs10013696-?	NR	8E-12				NR [~ 8900000] (imputed)	N
638	chr4	6984463	6984464	rs66573146	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte percentage of myeloid white cells	169,545 European ancestry individuals	NA	4p16.1	TBC1D14	rs66573146-G	0.0554	9E-12		0.05330028	[0.038-0.069] unit increase	Affymetrix [~ 2500000] (imputed)	N
638	chr4	6989793	6989794	rs143896995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	White blood cell count	408,112 British individuals	NA	4p16.1	TBC1D14	rs143896995-A	0.00514700000000001	3E-10		0.10028952	[0.069-0.132] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	6989793	6989794	rs143896995	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Neutrophil count	408,112 British individuals	NA	4p16.1	TBC1D14	rs143896995-A	0.00514700000000001	1E-11		0.10829434	[0.077-0.14] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	6990568	6990569	rs66519732	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p16.1	TBC1D14	rs66519732-G	0.056372	8E-11		0.03277873	[0.023-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	6990568	6990569	rs66519732	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4p16.1	TBC1D14	rs66519732-G	0.0562	1E-19		0.07067732	[0.055-0.086] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7011185	7011186	rs6446559	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Faecalibacterium sp002160895 abundance in stool	5,959 Finnish ancestry individuals	NA	4p16.1		rs6446559-G	0.13294	1E-8		0.0477038	[0.031-0.064] unit decrease	Illumina [7980478] (imputed)	N
638	chr4	7018184	7018185	rs16839553	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p16.1	NR	rs16839553-G	0.992978201291118	8E-6	(IGP65)	1.1375	[0.64-1.64] unit increase	Illumina [~ 2500000] (imputed)	N
638	chr4	7030703	7030704	rs55882710	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p16.1	TBC1D14	rs55882710-A	0.061835	6E-12		0.033108577	[0.024-0.043] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	7033670	7033671	rs12119	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	148,623 East Asian ancestry individuals	NA	4p16.1		rs12119-T	0.532538	1E-20		0.0312161	[0.025-0.038] unit increase	Illumina [13478928] (imputed)	N
638	chr4	7033670	7033671	rs12119	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Platelet count	108,208 Japanese ancestry individuals	NA	4p16.1	LOC100129931	rs12119-?	NR	6E-14		0.03324	[0.025-0.042] unit increase novel	Illumina [6108953] (imputed)	N
638	chr4	7039122	7039123	rs10937778	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	145,648 East Asian ancestry individuals	NA	4p16.1	NR	rs10937778-C	0.508177	9E-17		0.030908	[0.024-0.038] SD units decrease	Affymetrix, Illumina [16710488] (imputed)	N
638	chr4	7042348	7042349	rs6815294	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Monocyte count	62,076 Japanese ancestry individuals	NA	4p16.1	LOC100129931	rs6815294-?	NR	9E-12		0.04049	[0.029-0.052] unit increase novel	Illumina [6108953] (imputed)	N
638	chr4	7044379	7044380	rs871134	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	95,119 East Asian ancestry individuals	NA	4p16.1		rs871134-T	0.486474	6E-12		0.0305226	[0.022-0.039] unit increase	Illumina [13471440] (imputed)	N
638	chr4	7044379	7044380	rs871134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Monocyte count	234,690 European ancestry individuals	100,494 European ancestry individuals	4p16.1		rs871134-C	0.425	2E-34				Affymetrix [10369434] (imputed)	N
638	chr4	7044379	7044380	rs871134	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	234,184 European ancestry individuals	100,284 European ancestry individuals	4p16.1		rs871134-C	0.425	4E-31				Affymetrix [10369434] (imputed)	N
638	chr4	7044379	7044380	rs871134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	88,929 East Asian ancestry individuals	NA	4p16.1	NR	rs871134-C	0.514772	1E-11		0.033556	[0.024-0.043] SD units decrease	Affymetrix, Illumina [16289044] (imputed)	N
638	chr4	7044379	7044380	rs871134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs871134-T	0.554074	8E-96				Affymetrix, Illumina [23467995] (imputed)	N
638	chr4	7044379	7044380	rs871134	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Monocyte count	521,594 European ancestry individuals	NA	4p16.1	NR	rs871134-T	0.571095	7E-89		0.038297	[0.035-0.042] SD unit increase	Affymetrix, Illumina [50262088] (imputed)	N
638	chr4	7044379	7044380	rs871134	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	95,380 Japanese men	NA	4p16.1	CCDC96	rs871134-T	0.49	1E-14		0.032	NR unit decrease	Illumina [9591901] (imputed)	N
638	chr4	7044379	7044380	rs871134	31624269	Terao C	2019-10-17	Nat Commun	GWAS of mosaic loss of chromosome Y highlights genetic effects on blood cell differentiation.	Mosaic loss of chromosome Y (Y chromosome dosage)	205,011 men	NA	4p16.1	CCDC96	rs871134-T	0.57	1E-16		0.01	unit increase	NR [NR]	N
638	chr4	7045070	7045070	rs568868093	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Monocyte count	349,856 European ancestry individuals, 95,119 East Asian ancestry individuals	NA	4p16.1		rs568868093-TGCGGCG	NR	4E-61		0.0348	[0.031-0.039] unit increase	Affymetrix, Illumina [20531031] (imputed)	N
638	chr4	7045070	7045070	rs568868093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.605993	4E-39		0.030473167	[0.026-0.035] unit increase	Affymetrix [93095623] (imputed)	N
638	chr4	7045070	7045070	rs568868093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.605977	5E-17		0.019535359	[0.015-0.024] unit increase	Affymetrix [93095623] (imputed)	N
638	chr4	7045070	7045070	rs568868093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.606251	8E-29		0.026508568	[0.022-0.031] unit increase	Affymetrix [93095623] (imputed)	N
638	chr4	7045070	7045070	rs568868093	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte count	408,112 British individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-T	0.393785	2E-52		0.036530204	[0.032-0.041] unit increase	Affymetrix [93095623] (imputed)	N
638	chr4	7045070	7045070	rs568868093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Plateletcrit	164,339 European ancestry individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.6064	4E-14		0.02841025	[0.021-0.036] unit increase	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7045070	7045070	rs568868093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte count	170,721 European ancestry individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.6064	8E-29		0.04093386	[0.034-0.048] unit increase	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7045070	7045070	rs568868093	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Lymphocyte percentage of white cells	171,748 European ancestry individuals	NA	4p16.1	TADA2B, RP11-367J11.2	rs568868093-TGCGGCG	0.6065	7E-14		0.02742936	[0.02-0.035] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7047101	7047102	rs11931598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum neutrophil eosinophil counts	170,384 European ancestry individuals	NA		TADA2B, RP11-367J11.2	rs11931598-T	0.4443	8E-10		0.02235248	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7047101	7047102	rs11931598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Sum basophil neutrophil counts	170,143 European ancestry individuals	NA		TADA2B, RP11-367J11.2	rs11931598-T	0.4444	1E-9		0.02228458	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7047101	7047102	rs11931598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Neutrophil count	170,702 European ancestry individuals	NA		TADA2B, RP11-367J11.2	rs11931598-T	0.4444	7E-10		0.02241111	[0.015-0.03] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7047101	7047102	rs11931598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Myeloid white cell count	169,219 European ancestry individuals	NA		TADA2B, RP11-367J11.2	rs11931598-T	0.4444	5E-12		0.02525018	[0.018-0.032] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7047101	7047102	rs11931598	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Granulocyte count	169,822 European ancestry individuals	NA		TADA2B, RP11-367J11.2	rs11931598-T	0.4444	1E-9		0.02222182	[0.015-0.029] unit decrease	Affymetrix [~ 2500000] (imputed)	N
638	chr4	7059452	7059453	rs151338394	34469753	Kachuri L	2021-08-26	Am J Hum Genet	Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia.	Lymphocyte-to-monocyte ratio	334,468 European ancestry, NR ancestry individuals	NA	4p16.1		rs151338394-?	NR	5E-8				Affymetrix [NR] (imputed)	N
638	chr4	7071740	7071741	rs13139941	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Eosinophil percentage of white cells	408,112 British individuals	NA	4p16.1	GRPEL1	rs13139941-G	0.802589	4E-9		0.016398069	[0.011-0.022] unit decrease	Affymetrix [93095623] (imputed)	N
638	chr4	7071740	7071741	rs13139941	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p16.1		rs13139941-?	NR	4E-9				NR [~ 8900000] (imputed)	N
639	chr4	7080324	7080325	rs4689592	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Monocyte percentage of white cells	170,494 European ancestry individuals	NA	4p16.1	intergenic	rs4689592-T	0.1824	1E-11		0.03147556	[0.022-0.041] unit decrease	Affymetrix [~ 2500000] (imputed)	N
639	chr4	7145248	7145249	rs4689069	34231218	McDonough CW	2021-07-07	Clin Pharmacol Ther	Adverse Cardiovascular Outcomes and Antihypertensive treatment: A Genome-Wide Interaction Meta-Analysis in the International Consortium for Antihypertensive Pharmacogenomics Studies (ICAPS).	Adverse cardiovascular outcome x ACE inhibitors/ARBs interaction in hypertension	2,559 European ancestry individuals	NA	4p16.1		rs4689069-A	0.326	5E-7				Affymetrix, Illumina [6400000] (imputed)	N
639	chr4	7159701	7159702	rs3894944	23870195	Wojczynski MK	2013-07-19	BMC Med Genet	Genetics of coronary artery calcification among African Americans, a meta-analysis.	Coronary artery calcification	5,823 African American individuals	9,992 European ancestry individuals	4p16.1	SORCS2	rs3894944-A	0.77	3E-6	(AA)	0.18	[0.1-0.26] unit increase	Affymetrix, Illumina [up to 2727966] (imputed)	N
639	chr4	7185698	7185699	rs3936663	34177598	Wolking S	2021-06-09	Front Pharmacol	Role of Common Genetic Variants for Drug-Resistance to Specific Anti-Seizure Medications.	Response to valproic acid in epilepsy	612 European ancestry cases, 690 European ancestry controls	NA			rs3936663-?	NR	4E-6				Illumina [NR] (imputed)	N
639	chr4	7185698	7185699	rs3936663	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (time to first abdominal surgery)	1,360 European ancestry individuals	NA		NR	rs3936663-T	0.300895	4E-6				Illumina [5378266] (imputed)	N
639	chr4	7199131	7199132	rs12641357	33841421	Li J	2021-03-25	Front Immunol	Variants at the MHC Region Associate With Susceptibility to <i>Clostridioides difficile</i> Infection: A Genome-Wide Association Study Using Comprehensive Electronic Health Records.	Clostridioides difficle infection	1,160 European ancestry cases, 14,144 European ancestry controls	NA	4p16.1	SORCS2	rs12641357-T	0.1621	1E-6		1.32	[1.18-1.45]	Illumina [64973696] (imputed)	N
640	chr4	7209663	7209664	rs4689633	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4p16.1	NR	rs4689633-A	NR	4E-16		0.0271	[0.021-0.034] unit decrease	Affymetrix [9000000] (imputed)	N
640	chr4	7210801	7210802	rs4234795	28552477	Ilboudo Y	2017-05-13	Blood Cells Mol Dis	Genome-wide association study of erythrocyte density in sickle cell disease patients.	Red blood cell density in sickle cell anemia	374 cases	NA	4p16.1	SORCS2	rs4234795-G	0.94	2E-7		0.84	[0.55-1.13] unit decrease	Illumina [~ 31000000] (imputed)	N
640	chr4	7214220	7214221	rs4689641	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4p16.1	NR	rs4689641-C	NR	1E-14		0.0306	[0.023-0.038] unit increase	Affymetrix [9000000] (imputed)	N
640	chr4	7215321	7215322	rs4689642	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	4p16.1	SORCS2	rs4689642-G	0.254	4E-7	(HRTSE)	1.01	[0.62-1.4] unit increase	Illumina [799713]	N
640	chr4	7219932	7219933	rs4234798	21216879	Kaplan RC	2011-01-07	Hum Mol Genet	A genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.	Insulin-like growth factors	10,280 European ancestry individuals	NA	4p16.1	SORCS2	rs4234798-T	0.39	5E-10	(IGFBP-3)			Affymetrix, Illumina [~ 2500000] (imputed)	N
640	chr4	7223318	7223319	rs4689653	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4p16.1	NR	rs4689653-T	0.378108	6E-14		0.0148487	[0.011-0.019] unit decrease	Affymetrix [15000001]	N
640	chr4	7225612	7225613	rs576573069	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	LDL cholesterol levels	440,546 European ancestry individuals	NA	4p16.1	SORCS2	rs576573069-T	0.327722	3E-9		0.0135399	[0.0091-0.018] unit decrease	Affymetrix [NR] (imputed)	N
640	chr4	7225612	7225613	rs576573069	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4p16.1	SORCS2	rs576573069-T	0.32772	7E-10		0.0140374	[0.0096-0.0185] unit decrease	Affymetrix [NR] (imputed)	N
640	chr4	7255093	7255094	rs6812479	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Insulin-like growth factor 1 levels	340,567 European ancestry individuals, 5,974 African ancestry individuals, 7,283 South Asian ancestry individuals	NA	4p16.1	NR	rs6812479-C	NR	1E-11		0.0227	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
640	chr4	7258501	7258502	rs4610334	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls	NA	4p16.1	SORCS2	rs4610334-?	NR	4E-6		1.19	[1.10-1.28]	Illumina [at least 5000000] (imputed)	N
640	chr4	7294440	7294441	rs3846425	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p16.1	SORCS2	rs3846425-T	0.37	1E-8		0.007	[0.0046-0.0094] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
640	chr4	7324595	7324596	rs73208473	29315502	Tamraz B	2018-01-09	Clin Pharmacol Ther	A Genome-Wide Association Study Identifies a Candidate Gene Associated With Atazanavir Exposure Measured in Hair.	Atazanavir levels	64 European ancestry women, 194 African American women, 130 Hispanic women, 10 women	79 women	4p16.1	SORCS2	rs73208473-C	0.882	2E-8		2.17	[1.64-2.86]	Illumina [~ 14000000] (imputed)	N
640	chr4	7334536	7334537	rs3936615	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to serotonin-norepinephrine reuptake inhibitors (responders vs non-responders)	4,030 European ancestry responders, 3,049 European ancestry non-responders	NA	4p16.1	NR	rs3936615-G	NR	3E-6		0.777	NR	Illumina [at least 560000] (imputed)	N
641	chr4	7342724	7342725	rs6446592	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p16.1	NR	rs6446592-?	NR	2E-8				Affymetrix [NR]	N
641	chr4	7346718	7346719	rs11721852	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	4p16.1	SORCS2	rs11721852-T	0.03	4E-6		3.04	[1.90-4.87]	Illumina [3905175] (imputed)	N
641	chr4	7370663	7370664	rs58318008	33276381	Cheng CF	2020-12-04	Am J Hypertens	Genome-wide and candidate gene association analyses identify a 14-SNPs combination for hypertension in patients with type 2 diabetes.	Hypertension in type 2 diabetes	454 Han Chinese ancestry cases, 545 Han Chinese ancestry controls	563 Han Chinese ancestry cases, 359 Han Chinese ancestry controls	4p16.1	SORCS2	rs58318008-C		7E-6		1.8	[1.39-2.33]	Affymetrix, Illumina [NR] (imputed)	N
641	chr4	7390271	7390272	rs11731003	30252935	Smith AH	2018-09-25	Alcohol Clin Exp Res	Risk locus identification ties alcohol withdrawal symptoms to SORCS2.	Alcohol withdrawal symptoms	1,297 European American individuals	181 European American individuals	4p16.1	SORCS2	rs11731003-T	0.15	4E-9		0.9	unit increase	Illumina [NR] (imputed)	N
641	chr4	7423750	7423751	rs7694661	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	SORCS2	rs7694661-A	0.406	9E-6	(Fat mass deposition )	0.03	[NR] kcal/d increase	Illumina [899892]	N
641	chr4	7423750	7423751	rs7694661	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p16.1	SORCS2	rs7694661-A	0.406	3E-6	(Fat mass change )	0.04	[NR] kg/y increase	Illumina [899892]	N
641	chr4	7427106	7427107	rs35791045	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.1	PSAPL1	rs35791045-A	0.819375	3E-88	(PSAPL1, 8814_33_3)	0.5569137	[0.5-0.61] unit decrease	Illumina [> 1000000] (imputed)	N
641	chr4	7428265	7428266	rs13125782	28494655	Duncan L	2017-05-12	Am J Psychiatry	Significant Locus and Metabolic Genetic Correlations Revealed in Genome-Wide Association Study of Anorexia Nervosa.	Anorexia nervosa	3,495 European ancestry cases, 10,982 European ancestry controls	NA	4p16.1	NR	rs13125782-T	0.215	9E-7		1.19	[1.11-1.27]	Illumina [10641224] (imputed)	N
641	chr4	7431627	7431628	rs10021546	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAPL1	5,367 Icelandic ancestry individuals	NA	4p16.1		rs10021546-T	0.1884	9E-154		0.540505	[0.5-0.58] unit increase	Illumina [7506463] (imputed)	N
641	chr4	7433090	7433091	rs74563302	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PSAPL1	5,367 Icelandic ancestry individuals	NA	4p16.1		rs74563302-C	0.1931	4E-110		0.462234	[0.42-0.5] unit decrease	Illumina [7506463] (imputed)	N
641	chr4	7434455	7434456	rs10023470	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.1	PSAPL1	rs10023470-G	0.184	3E-71	(Proactivator polypeptide-like 1, PSAPL1.8814.33.3)	0.55	[0.49-0.61] unit increase	Affymetrix [10572788] (imputed)	N
641	chr4	7436700	7436701	rs77191210	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.1	NR	rs77191210-T	0.18	2E-58	(Proactivator polypeptide-like 1, PSAPL1.8814.33.3)	0.5	[0.44-0.56] unit decrease	Affymetrix [10572788] (imputed)	N
641	chr4	7459874	7459875	rs62277617	25188341	Beecham GW	2014-09-04	PLoS Genet	Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.	Hippocampal sclerosis	310 cases, 2,576 controls	NA	4p16.1	SORCS2	rs62277617-G	0.9132	8E-6		0.7386	[0.42-1.06] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
642	chr4	7572110	7572111	rs73214671	28334935	Raffield LM	2017-05-15	Hum Mol Genet	Genome-wide association study of iron traits and relation to diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL): potential genomic intersection of iron and glucose regulation?	Iron status biomarkers (transferrin saturation)	12,589 Hispanic/Latino individuals	NA	4p16.1	SORCS2	rs73214671-G	NR	3E-7		0.471	[0.29-0.65] unit increase	Illumina [27700000] (imputed)	N
642	chr4	7584766	7584767	rs10012347	27694959	Bonder MJ	2016-10-03	Nat Genet	The effect of host genetics on the gut microbiome.	Gut microbiota (functional units)	984 European ancestry individuals	530 European ancestry individuals	4p16.1	SORCS2	rs10012347-T	NR	3E-9	(PWY-6948_sitosterol_degradation_to_androstenedione)	5.925757	NR Z-score increase	Illumina [8100000] (imputed)	N
642	chr4	7590818	7590819	rs11722777	31345160	Jia H	2019-07-26	BMC Genet	GWAS of habitual coffee consumption reveals a sex difference in the genetic effect of the 12q24 locus in the Japanese population.	Coffee consumption	6,264 Japanese ancestry individuals	5,975 Japanese ancestry individuals	4p16.1	SORCS2	rs11722777-A	0.819	4E-6		0.123	[0.07-0.176] unit decrease	Illumina [5264155] (imputed)	N
643	chr4	7632037	7632038	rs34369999	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4p16.1	NR	rs34369999-A	0.164	6E-6		0.020931775	[0.012-0.03] unit decrease	Affymetrix [up to 6544775] (imputed)	N
643	chr4	7632327	7632328	rs76687979	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Heel bone mineral density x serum urate levels interaction	110,465 men, 127,334 women	NA		SORCS2	rs76687979-?	NR	4E-9	(female)	0.611763	[NR] unit increase	Affymetrix [NR] (imputed)	N
643	chr4	7707874	7707875	rs111913416	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-10 levels	7,681 Finnish ancestry individuals	NA	4p16.1	NR	rs111913416-T		7E-7		0.085	[0.051-0.119] SD units increase	NR [10700000] (imputed)	N
643	chr4	7708888	7708889	rs4689830	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Letter-number span reordering	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4p16.1	SORCS2	rs4689830-C	NR	6E-6		0.43493974	[0.25-0.62] unit increase	Illumina [> 6200000] (imputed)	N
643	chr4	7717628	7717629	rs16840900	26297903	Fabbri C	2015-08-20	Prog Neuropsychopharmacol Biol Psychiatry	Genetics of long-term treatment outcome in bipolar disorder.	Depressive and manic episodes in bipolar disorder	723 European ancestry cases	NA	4p16.1	SORCS2	rs16840900-?	NR	4E-6		0.09	[NR] unit increase	Affymetrix [329806]	N
644	chr4	7734423	7734424	rs192716625	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.1	NR	rs192716625-?	NR	7E-6		4.506	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
644	chr4	7743134	7743135	rs17382228	29160301	Fabbri C	2017-11-21	Pharmacogenomics J	New insights into the pharmacogenomics of antidepressant response from the GENDEP and STAR*D studies: rare variant analysis and high-density imputation.	Response to antidepressants (symptom improvement)	2,145 European ancestry individuals	NA	4p16.1	AFAP1, AFAP1-AS1, SORCS2	rs17382228-?	NR	2E-6		0.044	NR unit decrease	Affymetrix, Illumina [7062950] (imputed)	N
644	chr4	7744583	7744584	rs13132061	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Liver fibrosis in non-alcoholic fatty liver disease	235 European ancestry individuals	NA	4p16.1	intergenic	rs13132061-C	0.212121	2E-6		0.548454	[0.33-0.77] unit increase	NR [7263501] (imputed)	N
644	chr4	7753402	7753403	rs6855176	29452408	Shiga Y	2018-02-14	Hum Mol Genet	Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma.	Glaucoma (primary open-angle)	3,980 Japanese ancestry cases, 18,815 Japanese ancestry controls	4,406 East Asian ancestry cases, 18,161 East Asian ancestry controls, 5,008 European ancestry cases, 35,472 European ancestry controls, 769 African American cases, 663 African American controls, 1,572 Sub-Saharan African ancestry cases, 1,374 Sub-Saharan African ancestry controls.	4p16.1	AFAP1	rs6855176-C	0.43	7E-6	(Japanese discovery)	1.12	[1.06-1.18]	Illumina [6109376] (imputed)	N
644	chr4	7762501	7762502	rs11736215	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4p16.1	AFAP1	rs11736215-C	0.453261605490249	2E-6		0.002595	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
644	chr4	7765784	7765785	rs11730169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	484,042 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p16.1	NR	rs11730169-C	0.710537	2E-10				Affymetrix, Illumina [17210439] (imputed)	N
644	chr4	7765784	7765785	rs11730169	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p16.1	NR	rs11730169-C	0.700977	9E-12		0.014349	[0.01-0.018] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
644	chr4	7769760	7769761	rs34352176	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p16.1	NR	rs34352176-G	0.302611	2E-11		0.013613	[0.0096-0.0176] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
644	chr4	7800610	7800611	rs10029941	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Alanine aminotransferase levels in excessive alcohol consumption	951 individuals	NA	4p16.1	NR	rs10029941-?	NR	4E-6		0.021	[0.012-0.03] unit increase	Illumina [~ 7800000] (imputed)	N
644	chr4	7822993	7822994	rs67943620	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	4p16.1	NR	rs67943620-A		1E-10		0.13	[0.091-0.169] unit increase	NR [NR]	N
644	chr4	7823170	7823171	rs6446626	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	4p16.1	NR	rs6446626-G		6E-6		0.0725	[0.041-0.104] SD units increase	NR [10700000] (imputed)	N
644	chr4	7846239	7846240	rs28520091	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4p16.1	AFAP1	rs28520091-T	0.48	2E-9	(EA)	0.003	[0.0022-0.0038] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
644	chr4	7846239	7846240	rs28520091	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4p16.1	AFAP1	rs28520091-T	0.48	2E-9	(EA)	0.003	[0.0022-0.0038] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
644	chr4	7846239	7846240	rs28520091	30061609	Wyss AB	2018-07-30	Nat Commun	Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.	Lung function (FEV1/FVC)	60,552 European ancestry individuals, 8,429 African individuals, 9,959 Korean ancestry individuals, 11,775 Hispanic individuals		4p16.1	AFAP1	rs28520091-T	0.44	8E-9		0.002	[0.0012-0.0028] unit increase	Affymetrix, Illumina [10900000] (imputed)	N
644	chr4	7846239	7846240	rs28520091	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	4p16.1	AFAP1	rs28520091-?	NR	5E-18		0.113	[0.087-0.139] unit decrease	Affymetrix, Illumina [up to 40000000] (imputed)	N
644	chr4	7846239	7846240	rs28520091	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	4p16.1	AFAP1	rs28520091-?	NR	2E-11		1.1102664	[1.08-1.14]	Affymetrix [up to 40000000] (imputed)	N
644	chr4	7847663	7847664	rs28495790	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 1)	19,670 European ancestry individuals	NA	4p16.1		rs28495790-?	NR	7E-9				NR [9705931] (imputed)	N
644	chr4	7850842	7850843	rs188006861	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p16.1	AFAP1	rs188006861-A	0.991	9E-7	(AA)	0.096	unit increase	Illumina [NR] (imputed)	N
644	chr4	7850902	7850903	rs4488938	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Chronic obstructive pulmonary disease	13,530 European ancestry cases, 454,945 European ancestry controls, 4,017 East Asian ancestry cases, 162,653 East Asian ancestry controls	NA	4p16.1		rs4488938-G	NR	1E-8		0.1045	[0.069-0.14] unit increase	Affymetrix, Illumina [25843162] (imputed)	N
644	chr4	7853159	7853160	rs4619890	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p16.1	NR	rs4619890-G	0.5	4E-12				NR [9056863] (imputed)	N
644	chr4	7853159	7853160	rs4619890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs4619890-?	NR	1E-21				NR [~ 8900000] (imputed)	N
644	chr4	7853159	7853160	rs4619890	25173105	Gharahkhani P	2014-08-31	Nat Genet	Common variants near ABCA1, AFAP1 and GMDS confer risk of primary open-angle glaucoma.	Glaucoma (primary open-angle)	1,155 European ancestry cases, 1,922 European ancestry controls	3,548 European ancestry cases, 9,496 European ancestry controls	4p16.1	AFAP1	rs4619890-G	0.50	7E-10		1.2	[NR]	Illumina [7594768] (imputed)	N
644	chr4	7854169	7854170	rs28485535	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls	NA	4p16.1	AFAP1	rs28485535-T	0.226559	4E-9		0.13959664	[0.093-0.186] unit increase	Affymetrix [7288503] (imputed)	N
644	chr4	7857229	7857230	rs61742221	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (MOSTest)	26,502 European ancestry individuals	NA	4p16.1	PKDCC	rs61742221-?		2E-8				NR [7428630] (imputed)	N
644	chr4	7861282	7861283	rs28649910	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	4p16.1	AFAP1	rs28649910-A	0.202	9E-41		0.216	[0.18-0.25] unit increase	Affymetrix, Illumina [NR] (imputed)	N
645	chr4	7864456	7864457	rs6816389	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	4p16.1	AFAP1	rs6816389-T	0.5648	2E-34		0.1676	[0.14-0.2] unit increase	Affymetrix [~ 11900000] (imputed)	N
645	chr4	7869427	7869428	rs62289333	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.1		rs62289333-A	0.44	2E-26		10.65	z score increase	Affymetrix [9061022] (imputed)	N
645	chr4	7871622	7871623	rs7680747	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p16.1		rs7680747-A	0.44	2E-11		6.71	z score increase	Affymetrix [9061022] (imputed)	N
645	chr4	7879026	7879027	rs62289340	30804560	Shrine N	2019-02-25	Nat Genet	New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries.	Lung function (FEV1/FVC)	321,047 European ancestry individuals	79,005 European ancestry individuals	4p16.1	AFAP1	rs62289340-T	0.4358	2E-12		0.0167	[0.012-0.021] unit increase	Affymetrix [19819130] (imputed)	N
645	chr4	7883886	7883887	rs9330348	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	4p16.1	AFAP1	rs9330348-C		2E-18		1.16	1.12-1.20	NR [NR] (imputed)	N
645	chr4	7887499	7887500	rs7437940	27618447	Surendran P	2016-10-01	Nat Genet	Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension.	Pulse pressure	up to 165,276 European ancestry individuals, up to 27,487 South Asian ancestry individuals	up to 125,713 European ancestry individuals, up to 2,641 South Asian ancestry individuals, 4,632 Hispanic individuals, 22,077 African American individuals	4p16.1	AFAP1	rs7437940-T	0.4482	1E-7		0.166	mmHg decrease	Illumina [242296]	N
645	chr4	7887499	7887500	rs7437940	25861811	Li Z	2015-04-10	Hum Mol Genet	A common variant near TGFBR3 is associated with primary open angle glaucoma.	Glaucoma (primary open-angle)	2,735 East Asian ancestry cases, 590 African American cases, 121 South Asian ancestry cases, 58 South East Asian ancestry cases, 6,410 East Asian ancestry controls, 636 African American controls, 716 South Asian ancestry controls, 1,984 South East Asian ancestry controls	4,773 European ancestry cases, 3,006 East Asian ancestry cases, 497 African American cases, 453 South Asian ancestry cases, 208 South East Asian ancestry cases, 236 Middle East ancestry cases, 11,786 European ancestry controls, 8,754 East Asian ancestry controls, 304 African American controls, 2,496 South Asian ancestry controls, 2,785 South East Asian ancestry controls, 655 Middle East ancestry controls	4p16.1	AFAP1	rs7437940-?	NR	4E-6		1.1494253		Illumina [~ 272000]	N
645	chr4	7889095	7889096	rs7663205	30104761	Zhou W	2018-08-13	Nat Genet	Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies.	Glaucoma	4,462 European ancestry cases, 397,761 European ancestry controls	NA	4p16.1	AFAP1	rs7663205-T	0.40039	9E-12				Affymetrix [28000000] (imputed)	N
645	chr4	7889300	7889301	rs7655918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4p16.1		rs7655918-G	NR	1E-10		0.0125	[0.0088-0.0162] unit increase	Affymetrix, Illumina [20537391] (imputed)	N
645	chr4	7891544	7891545	rs28795989	32352494	Han X	2020-04-30	JAMA Ophthalmol	Association of Myopia and Intraocular Pressure With Retinal Detachment in European Descent Participants of the UK Biobank Cohort: A Mendelian Randomization Study.	Intraocular pressure	101,939 European ancestry cases	NA	4p16.1	NR	rs28795989-A		3E-31		0.17	[0.15-0.19] unit increase	NR [NR]	N
645	chr4	7891544	7891545	rs28795989	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	4p16.1	AFAP1	rs28795989-A	0.4	4E-33				Affymetrix, Illumina [8002429] (imputed)	N
645	chr4	7891544	7891545	rs28795989	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma (multi-trait analysis)	133,492 European ancestry individuals with intraocular pressure measurements, 90,939 European ancestry individuals with vertical cup-disc ratio measurements, 7,947 British ancestry glaucoma cases, 119,318 British ancestry controls	6,924 European ancestry glaucoma cases, 40,230 European ancestry controls	4p16.1	AFAP1	rs28795989-A	0.4	6E-42		1.16	NR	Affymetrix, Illumina [8002429] (imputed)	N
645	chr4	7891544	7891545	rs28795989	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	4p16.1	AFAP1	rs28795989-A	0.4	4E-17		1.15	NR	Affymetrix [at least 8002429] (imputed)	N
645	chr4	7891544	7891545	rs28795989	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	4p16.1	AFAP1	rs28795989-A	NR	2E-20		1.15	[1.11-1.20]	Affymetrix [up to 40000000] (imputed)	N
645	chr4	7891544	7891545	rs28795989	29235454	Choquet H	2017-12-13	Nat Commun	A large multi-ethnic genome-wide association study identifies novel genetic loci for intraocular pressure.	Intraocular pressure	56,819 European ancestry individuals, 5,748 Hispanic/Latino individuals, 5,119 East Asian ancestry individuals, 2,070 African American individuals	37,930 European and Asian ancestry individuals	4p16.1	AFAP1	rs28795989-?	NR	6E-21		0.13	[NR] unit increase	Affymetrix [at least 665000] (imputed)	N
645	chr4	7896212	7896213	rs28500712	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Intraocular pressure	133,492 European ancestry individuals	NA	4p16.1	AFAP1	rs28500712-?	NR	2E-34		0.1792	[0.15-0.21] unit increase	Affymetrix, Illumina [up to 40000000] (imputed)	N
645	chr4	7896212	7896213	rs28500712	30054594	MacGregor S	2018-07-27	Nat Genet	Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma.	Glaucoma	11,018 European ancestry cases, 126,068 European ancestry controls	NA	4p16.1	AFAP1	rs28500712-?	NR	3E-14		1.1379176	[1.10062698083145-1.17647184765035]	Affymetrix [up to 40000000] (imputed)	N
645	chr4	7897167	7897168	rs62289359	29617998	Gao XR	2018-03-28	Hum Mol Genet	Genome-Wide Association Analyses Identify New Loci Influencing Intraocular Pressure.	Intraocular pressure	115,486 European ancestry individuals	NA	4p16.1	AFAP1	rs62289359-C	0.5405	1E-39		0.1796	[0.15-0.21] unit increase	Affymetrix [~ 11900000] (imputed)	N
645	chr4	7898576	7898577	rs7686202	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (antiglaucoma preparations and miotics)	5,215 European ancestry cases, 95,653 European ancestry controls, 5,911 East Asian ancestry cases, 172,815 East Asian ancestry controls	NA	4p16.1		rs7686202-T	NR	7E-9		0.1186	[0.078-0.159] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
645	chr4	7899378	7899379	rs6845653	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	16,677 European ancestry cases, 199,580 European ancestry controls	7,286 European ancestry cases, 107,362 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	4p16.1	AFAP1	rs6845653-T	NR	7E-40		0.837277	[0.81-0.86]	Affymetrix, Illumina [14822926] (imputed)	N
645	chr4	7902002	7902003	rs4478172	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (high intraocular pressure)	3,376 European ancestry cases, 15,151 European ancestry controls, 1,516 East Asian ancestry cases, 32,649 East Asian ancestry controls, 252 Sub-Saharan African ancestry cases, 197 Sub-Saharan African ancestry controls	NA	4p16.1	AFAP1	rs4478172-A	NR	5E-11		0.847216	[0.8-0.9]	Illumina [NR] (imputed)	N
645	chr4	7902002	7902003	rs4478172	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p16.1		rs4478172-?	NR	8E-15				NR [~ 8900000] (imputed)	N
645	chr4	7904110	7904111	rs1320074	27623284	Verma SS	2016-09-13	PLoS Genet	Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium.	Glaucoma (primary open-angle)	14 Black cases, 922 European ancestry cases, 25 cases, 82 Black controls, 3,918 European ancestry controls, 129 controls	NA	4p16.1	AFAP1	rs1320074-?	NR	2E-6		1.3	[NR]	NR [2914185]	N
645	chr4	7904362	7904363	rs938604	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	23,963 European ancestry cases, 306,942 European ancestry controls, 6,935 East Asian ancestry cases, 39,588 East Asian ancestry controls, 3,281 Sub-Saharan African ancestry cases, 2,791 Sub-Saharan African ancestry controls	43,254 European ancestry cases, 1,471,118 European ancestry controls	4p16.1	AFAP1	rs938604-A	NR	1E-49		0.107	unit decrease	Illumina [15409056] (imputed)	N
645	chr4	7906328	7906329	rs62290561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p16.1		rs62290561-?	NR	6E-9				NR [~ 8900000] (imputed)	N
645	chr4	7909771	7909772	rs59521811	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	3,836 European ancestry cases, 48,065 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 441 East Asian ancestry cases, 4,034 East Asian ancestry controls, 298 African American cases, 1,549 African American controls	6,687 European ancestry cases, 155,514 European ancestry controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 22 East Asian ancestry cases, 873 East Asian ancestry controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	4p16.1	AFAP1	rs59521811-C		1E-16		1.1627907	[1.12-1.2]	Affymetrix [at least 665500] (imputed)	N
645	chr4	7911770	7911771	rs6811851	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glaucoma	10,411 European ancestry cases, 474,568 European ancestry controls, 8,448 East Asian ancestry cases, 168,903 East Asian ancestry controls	NA	4p16.1		rs6811851-C	NR	3E-20		0.1134	[0.089-0.138] unit increase	Affymetrix, Illumina [25844939] (imputed)	N
645	chr4	7916181	7916182	rs34179701	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	8,758 European ancestry cases, 108,815 European ancestry controls, 1,996 East Asian ancestry cases, 16,559  East Asian ancestry controls, 171 Sub-Saharan African ancestry cases, 94 Sub-Saharan African ancestry controls	NA	4p16.1	AFAP1	rs34179701-T	NR	1E-16		0.874678	[0.84-0.91]	Illumina [NR] (imputed)	N
645	chr4	7916539	7916540	rs6857814	29891935	Choquet H	2018-06-11	Nat Commun	A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.	Glaucoma (primary open-angle)	10,523 European ancestry cases, 203,579 European ancestry controls, 411 Hispanic cases, 4,778 Hispanic controls, 463 East Asian ancestry cases, 4,907 East Asian ancestry controls, 298 African American cases, 1,549 African American controls, 204 South Asian ancestry cases, 4,916 South Asian ancestry controls, 272 African British cases, 4,831 African British controls, 144 mixed ancestry cases, 3,427 mixed ancestry controls	NA	4p16.1	AFAP1	rs6857814-G	NR	6E-27		1.1627907	[1.12-1.19]	Affymetrix [at least 665500] (imputed)	N
645	chr4	7917573	7917574	rs12641498	33627673	Gharahkhani P	2021-02-24	Nat Commun	Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.	Glaucoma (primary open-angle)	9,179 European ancestry cases, 134,471 European ancestry controls, 1,983 East Asian ancestry cases, 13,719 East Asian ancestry controls, 127 Sub-Saharan African ancestry cases, 100 Sub-Saharan African ancestry controls	NA	4p16.1	AFAP1	rs12641498-T	NR	2E-13		1.12862	[1.1-1.16]	Illumina [NR] (imputed)	N
645	chr4	7917805	7917806	rs6838291	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Intraocular pressure	133,492 European ancestry individuals	NA	4p16.1	AFAP1	rs6838291-C	0.82	5E-30				Affymetrix, Illumina [8002429] (imputed)	N
645	chr4	7917805	7917806	rs6838291	31959993	Craig JE	2020-01-20	Nat Genet	Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression.	Glaucoma	7,947 British ancestry cases, 119,318 British ancestry controls	NA	4p16.1	AFAP1	rs6838291-T	0.18	1E-14		1.1764705	NR	Affymetrix [at least 8002429] (imputed)	N
645	chr4	7920266	7920267	rs12507127	29785010	Khawaja AP	2018-05-21	Nat Genet	Genome-wide analyses identify 68 new loci associated with intraocular pressure and improve risk prediction for primary open-angle glaucoma.	Intraocular pressure	139,555 European ancestry individuals	NA	4p16.1	AFAP1	rs12507127-A	0.625	2E-34		0.167	[0.14-0.19] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
645	chr4	7930261	7930262	rs9994626	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p16.1	AFAP1, AC097381.1	rs9994626-?		3E-8				NR [7428630] (imputed)	N
645	chr4	7936604	7936605	rs7689238	31719535	Noordam R	2019-11-12	Nat Commun	Multi-ancestry sleep-by-SNP interaction analysis in 126,926 individuals reveals lipid loci stratified by sleep duration.	HDL cholesterol levels x short total sleep time interaction (2df test)	3,007 African American short sleepers, 369 Chinese ancestry short sleepers, 114 Asian ancestry short sleepers, at least 8,474 European ancestry short sleepers, 1,082 Hispanic/Latino short sleepers, up to 11,901 African American controls, 1,444 Chinese ancestry controls, 452 Asian ancestry controls, at least 31,567 European ancestry controls, 4,047 Hispanic/Latino controls	up to 221 African American short sleepers, 629 East Asian ancestry short sleepers, up to 9,585 European ancestry short sleepers, 2,517 Hispanic short sleepers, at least 925 African American controls, 2,504 East Asian ancestry controls, up to 38,027 European ancestry controls, 10,061 Hispanic controls	4p16.1	AFAP1	rs7689238-?	NR	1E-9	(EA)	0.00396	[0.0019-0.006] unit increase	Affymetrix, Illumina [up to 2533153] (imputed)	N
645	chr4	7987801	7987802	rs6841948	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1 in COPD	5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases	NA	4p16.1	ABLIM2	rs6841948-C	0.478	1E-6	(AA)	0.114	NR unit increase	Illumina [NR] (imputed)	N
646	chr4	8021591	8021592	rs13131680	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	4p16.1	ABLIM2	rs13131680-C	0.39	5E-6	(African American)	0.17	0.1-0.25 unit increase	Illumina [NR] (imputed)	N
646	chr4	8028962	8028963	rs11728253	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4p16.1	NR	rs11728253-T	0.733	1E-8		0.00868565	[0.0057-0.0117] unit decrease	NR [~ 9732723] (imputed)	N
646	chr4	8041799	8041800	rs1574131	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	4p16.1	ABLIM2	rs1574131-?		6E-6				Illumina [1048575]	N
646	chr4	8044972	8044973	rs79631799	28808816	Xu C	2017-08-14	Biogerontology	A genome-wide association study of cognitive function in Chinese adult twins.	Cognitive function	139 Chinese ancestry dizygotic twin pairs	NA	4p16.1	ABLIM2	rs79631799-?		7E-6				Illumina [1048575]	N
646	chr4	8050342	8050343	rs10029338	31537151	Freitag-Wolf S	2019-09-19	J Dent Res	Smoking Modifies the Genetic Risk for Early-Onset Periodontitis.	Early onset periodontitis x smoking status interaction	499 European ancestry ever-smoker cases, 242 European ancestry never-smoker cases	NA	4p16.1	ABLIM2	rs10029338-A		4E-6				NR [79780573] (imputed)	N
646	chr4	8107942	8107943	rs77962525	32887889	Rashkin SR	2020-09-04	Nat Commun	Pan-cancer study detects genetic risk variants and shared genetic basis in two large cohorts.	Pancreatic cancer	663 European ancestry cases, 410,350 European ancestry controls	NA	4p16.1		rs77962525-T	NR	3E-7		10.66098	NR	Affymetrix [7846216] (imputed)	N
646	chr4	8110497	8110498	rs1105615	29626450	Bonfiglio F	2018-04-04	Gastroenterology	Female-specific Association Between Variants on Chromosome 9 and Self-reported Diagnosis of Irritable Bowel Syndrome.	Irritable bowel syndrome	7,130 British ancestry women cases, 2,446 British ancestry men cases, 178,076 British ancestry women controls, 158,423 British ancestry men controls	NA	4p16.1	ABLIM2	rs1105615-T	0.16	3E-6		0.091	[0.052-0.13] unit increase	Affymetrix [7287191] (imputed)	N
646	chr4	8122220	8122221	rs13151374	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	4p16.1	ABLIM2	rs13151374-A	NR	4E-8	(TAG(50:2;0))	0.2467	[0.16-0.33] unit increase	Illumina [~ 9300000] (imputed)	N
646	chr4	8122220	8122221	rs13151374	31551469	Tabassum R	2019-09-24	Nat Commun	Genetic architecture of human plasma lipidome and its link to cardiovascular disease.	Triacylglyceride levels	2,045 European ancestry individuals	NA	4p16.1	ABLIM2	rs13151374-A	NR	4E-8	(TAG(50:1;0))	0.2468	[0.16-0.33] unit increase	Illumina [~ 9300000] (imputed)	N
647	chr4	8137597	8137598	rs73218483	31123309	Rayner C	2019-05-23	Transl Psychiatry	A genome-wide association meta-analysis of prognostic outcomes following cognitive behavioural therapy in individuals with anxiety and depressive disorders.	Response to cognitive-behavioural therapy in major depressive disorder	832 adult cases	NA	4p16.1	ABLIM2, ACOX3, AFAP1, HTRA3, SH3TC1	rs73218483-T	0.08	2E-6		0.46	[0.26-0.66] unit decrease	Illumina [at least 4710000] (imputed)	N
647	chr4	8190986	8190987	rs148323050	32157568	Strupp M	2020-03-10	Cerebellum	A Variation in FGF14 Is Associated with Downbeat Nystagmus in a Genome-Wide Association Study.	Idiopathic downbeat nystagmus	106 European ancestry cases, 2,609 European ancestry controls	NA	4p16.1	SH3TC1	rs148323050-T	0.013	7E-6		12.49	[4.16-37.53]	Illumina [7759885] (imputed)	N
647	chr4	8202840	8202841	rs1298472	28173075	Niu N	2016-09-11	Hum Mol Genet	Metformin pharmacogenomics: a genome-wide association study to identify genetic and epigenetic biomarkers involved in metformin anticancer response using human lymphoblastoid cell lines.	Response to metformin (IC50)	up to 96 African American lymphoblastoid cell lines, up to 96 Han Chinese American lymphoblastoid cell lines, up to 96 European ancestry lymphoblastoid cell lines	NA	4p16.1	SH3TC1	rs1298472-?	NR	3E-6			NR	Affymetrix, Illumina [~ 6700000] (imputed)	N
647	chr4	8224275	8224276	rs2002574	32493714	Klimentidis YC	2020-06-03	Diabetes	Phenotypic and Genetic Characterization of Lower LDL-C and Increased Type-2 Diabetes Risk in the UK Biobank.	Low density lipoprotein cholesterol levels	431,167 European ancestry individuals	NA	4p16.1	NR	rs2002574-T	0.73602	2E-9		0.0130536	[0.0088-0.0173] unit increase	Affymetrix [15000001]	N
647	chr4	8229377	8229378	rs139890356	33542107	Wan X	2021-02-04	J Am Soc Nephrol	Heterozygosity for a Pathogenic Variant in <i>SLC12A3</i> That Causes Autosomal Recessive Gitelman Syndrome Is Associated with Lower Serum Potassium.	Potassium levels	5,812 Old Order Amish (founder/genetic isolate) individuals	NA	4p16.1		rs139890356-?	NR	3E-7		0.6397	mmol/L increase	Illumina [NR]	N
647	chr4	8235219	8235220	rs111285143	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4p16.1		rs111285143-A	NR	2E-10		0.0791	[0.055-0.103] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
647	chr4	8235219	8235220	rs111285143	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Aspartate aminotransferase levels	436,275 European ancestry individuals	NA	4p16.1		rs111285143-?	NR	7E-14		0.0853501	[0.062-0.109] unit increase	NR [9800000] (imputed)	N
647	chr4	8235219	8235220	rs111285143	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4p16.1	NR	rs111285143-A	NR	6E-10		0.081	[0.055-0.107] unit increase	Affymetrix [9000000] (imputed)	N
648	chr4	8329425	8329426	rs7670088	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Carpal tunnel syndrome	18,855 European ancestry cases, 461,346 European ancestry controls, 192 East Asian ancestry cases, 178,534 East Asian ancestry controls	NA	4p16.1		rs7670088-C	NR	2E-9		0.0729	[0.049-0.097] unit decrease	Affymetrix, Illumina [25844227] (imputed)	N
649	chr4	8405313	8405314	rs2631752	33888516	Zheng T	2021-04-22	Gut	Genome-wide analysis of 944 133 individuals provides insights into the etiology of haemorrhoidal disease.	Haemorrhoidal disease	218,920 European ancestry cases, 725,213 European ancestry controls	NA	4p16.1	ACOX3	rs2631752-?	0.4986	4E-10		1.02	[1.02-1.03]	Affymetrix, Illumina [8494288] (imputed)	N
649	chr4	8460820	8460821	rs116262938	31311600	Namjou B	2019-07-17	BMC Med	GWAS and enrichment analyses of non-alcoholic fatty liver disease identify new trait-associated genes and pathways across eMERGE Network.	Alanine aminotransferase levels in non-alcoholic fatty liver disease	1,075 European ancestry individuals	NA	4p16.1	TRMT44	rs116262938-T	0.0389972	9E-6		0.437098	[0.25-0.63] unit decrease	NR [7263501] (imputed)	N
649	chr4	8479753	8479754	rs2631738	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p16.1	CPZ	rs2631738-G	0.519	1E-15	(Carboxypeptidase Z, CPZ.6493.9.3)	0.19	[0.15-0.23] unit increase	Affymetrix [10572788] (imputed)	N
649	chr4	8484412	8484413	rs2688220	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p16.1	CPZ	rs2688220-C	0.5203125	9E-9	(CPZ, 6493_9_3)	0.14131305	[0.093-0.189] unit increase	Illumina [> 1000000] (imputed)	N
649	chr4	8503358	8503359	rs1949733	21659360	Wade R	2011-06-09	Haematologica	Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.	Response to antineoplastic agents	356 European ancestry cases	380 European ancestry cases	4p16.1	C4orf23, ACOX3	rs1949733-A	NR	8E-7		2.36	[1.60-3.47]	Illumina [326385]	N
650	chr4	8546410	8546411	rs13116362	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.1	CPZ	rs13116362-?	NR	4E-6	(CE 22:6)	0.18176155	[0.1-0.26] unit decrease	Affymetrix [at least 2500000] (imputed)	N
650	chr4	8558265	8558266	rs13116227	29494758	Liu L	2018-03-01	Br J Dermatol	Genome-wide association study identifies three novel susceptibility loci for systemic lupus erythematosus in Han Chinese.	Systemic lupus erythematosus	1,047 Han Chinese ancestry cases, 1,205 Han Chinese ancestry controls	3,509 Han Chinese ancestry cases, 8,246 Han Chinese ancestry controls	4p16.1	GPR78	rs13116227-T	0.09561	3E-11		1.34	[NR]	NR [at least 493955] (imputed)	N
650	chr4	8565546	8565547	rs7676745	31413261	Deelen J	2019-08-14	Nat Commun	A meta-analysis of genome-wide association studies identifies multiple longevity genes.	Longevity (age >90th survival percentile)	11,262 European ancestry cases, 2,178 East Asian ancestry cases, 177 African American cases, 25,483 European ancestry controls, 2,299 East Asian ancestry controls, 211 African American controls.	NA	4p16.1	GPR78	rs7676745-G	0.96	2E-7		1.4925373	[1.28-1.72]	Affymetrix, Illumina [up to 10786384] (imputed)	N
650	chr4	8589476	8589477	rs17844781	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p16.1	CPZ	rs17844781-A	0.00696786659150092	8E-6	(G_Paraprevotella_RNT)	0.511204	[0.29-0.74] unit decrease	Illumina [7711310] (imputed)	N
650	chr4	8591527	8591528	rs3775887	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.1		rs3775887-?	NR	5E-9				NR [~ 8900000] (imputed)	N
650	chr4	8598697	8598698	rs3756173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p16.1		rs3756173-T	NR	7E-46		0.0193	[0.017-0.022] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
650	chr4	8598697	8598698	rs3756173	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p16.1		rs3756173-T	0.414739	8E-22		0.021327	[0.017-0.026] unit decrease	Illumina [13479295] (imputed)	N
650	chr4	8598697	8598698	rs3756173	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p16.1	CPZ	rs3756173-?	NR	6E-24		0.031759422	[0.026-0.038] unit decrease	Illumina [27896057] (imputed)	N
650	chr4	8598697	8598698	rs3756173	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs3756173-?	NR	2E-53				NR [~ 8900000] (imputed)	N
650	chr4	8602224	8602225	rs3756171	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p16.1	CPZ	rs3756171-?		2E-8				Affymetrix, Illumina [NR] (imputed)	N
650	chr4	8602797	8602798	rs2241069	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p16.1	CPZ	rs2241069-G	0.455095	5E-12		0.0147	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
650	chr4	8602797	8602798	rs2241069	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p16.1	CPZ	rs2241069-G	0.455095	4E-13	(females)	0.0194	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
650	chr4	8602797	8602798	rs2241069	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p16.1	CPZ	rs2241069-G	0.455095	2E-7	(females)	0.01259	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
650	chr4	8602797	8602798	rs2241069	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p16.1	CPZ	rs2241069-G	0.455095	1E-7		0.01129	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
650	chr4	8602797	8602798	rs2241069	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p16.1	CPZ	rs2241069-G	0.455095	8E-7	(females)	0.01717	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
650	chr4	8603794	8603795	rs10019092	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p16.1	CPZ	rs10019092-?		3E-6				Illumina [4322238] (imputed)	N
650	chr4	8604499	8604500	rs3822201	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p16.1	GPR78, CPZ	rs3822201-T	0.4529	8E-6		0.0311	[0.017-0.045] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
650	chr4	8609847	8609848	rs62288581	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p16.1	CPZ	rs62288581-A	0.4206	3E-12		0.0135	[0.0098-0.0172] unit decrease	Affymetrix [18391927] (imputed)	N
650	chr4	8613025	8613026	rs3796727	28545128	McDaniel LD	2017-05-18	PLoS Genet	Common variants upstream of MLF1 at 3q25 and within CPZ at 4p16 associated with neuroblastoma.	Sporadic neuroblastoma	2,101 European ancestry child cases, 4,202 European ancestry controls	365 African American child cases, 2,491 African American controls, 427 European ancestry cases, 783 European ancestry controls, 371 cases, 1,122 controls	4p16.1	CPZ	rs3796727-A	0.30	1E-12	(non-African)	1.3	[1.21-1.40]	Illumina [7968453] (imputed)	N
650	chr4	8643084	8643085	rs12510524	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p16.1	NR	rs12510524-?	NR	7E-6				Affymetrix [5486770] (imputed)	N
651	chr4	8708759	8708760	rs35733340	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4p16.1	NR	rs35733340-?	NR	4E-7		4134.417	NR unit decrease	Illumina [2379855]	N
653	chr4	8970918	8970919	rs186090691	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ CD38+ B cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p16.1		rs186090691-A	0.01031	1E-8		0.7905	[0.52-1.06] unit decrease	Illumina [18238137] (imputed)	N
654	chr4	9114500	9114501	rs138945390	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		4p16.1	intergenic	rs138945390-?	NR	2E-7	(AA)	0.167	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
656	chr4	9395311	9395312	rs4974838	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs4974838-C	NR	2E-14		0.0323	[0.024-0.041] unit increase	Affymetrix [9000000] (imputed)	N
656	chr4	9401850	9401851	rs112583696	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs112583696-T	NR	1E-29		0.0823	[0.068-0.097] unit increase	Affymetrix [9000000] (imputed)	N
657	chr4	9440567	9440568	rs55864808	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs55864808-T	NR	4E-17		0.0626	[0.048-0.077] unit increase	Affymetrix [9000000] (imputed)	N
657	chr4	9455689	9455690	rs12501884	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	DEFB131A	rs12501884-A	0.4456	2E-35	(East Asian)	0.0827	[0.07-0.096] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
657	chr4	9491204	9491205	rs6820627	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	DEFB131A	rs6820627-A	0.071	5E-21		0.1004	[0.079-0.121] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
657	chr4	9491204	9491205	rs6820627	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4p16.1	NR	rs6820627-A	0.9387	3E-19	(women)	0.1277	[0.1-0.156] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
657	chr4	9491204	9491205	rs6820627	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4p16.1	NR	rs6820627-A	0.9186	6E-7	(men)	0.0764	[0.046-0.106] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
657	chr4	9497812	9497813	rs185571697	30718321	Sanchez-Roige S	2019-02-04	J Neurosci	Genome-wide association studies of impulsive personality traits (BIS-11 and UPPSP) and drug experimentation in up to 22,861 adult research participants identify loci in the CACNA1I and CADM2 genes.	Impulsivity (motor)	21,806 European ancestry individuals	NA	4p16.1	DEFB131, DRD5	rs185571697-C	0.9973	3E-7		0.513	[0.709-0.317] unit decrease	Illumina [11434023] (imputed)	N
657	chr4	9511323	9511324	rs11737509	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs11737509-A	NR	5E-127		0.1929	[0.18-0.21] unit decrease	Affymetrix [9000000] (imputed)	N
657	chr4	9542349	9542350	rs62412107	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Creatinine levels	16,347 British ancestry from 6863 families.	NA	4p16.1	intergenic	rs62412107-A	0.066	2E-8		0.15169783	[0.099-0.205] mg/dl increase	Illumina [24111857] (imputed)	N
657	chr4	9545414	9545415	rs10014685	32961455	Song W	2020-09-15	Drug Alcohol Depend	Genome-wide association analysis of opioid use disorder: A novel approach using clinical data.	Opioid use disorder vs exposed controls	1,039 European ancestry cases, 10,744 European ancestry controls	NA	4p16.1	NR	rs10014685-A	NR	2E-9		0.741	NR	Illumina [5508534] (imputed)	N
657	chr4	9545414	9545415	rs10014685	32961455	Song W	2020-09-15	Drug Alcohol Depend	Genome-wide association analysis of opioid use disorder: A novel approach using clinical data.	Opioid use disorder	1,039 European ancestry cases, 20,271 European ancestry controls	NA	4p16.1	NR	rs10014685-A	NR	2E-8		0.765	NR	Illumina [5508534] (imputed)	N
657	chr4	9558354	9558355	rs73805517	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73805517-C	NR	2E-39		0.0789	[0.067-0.091] unit decrease	Affymetrix [9000000] (imputed)	N
658	chr4	9575413	9575414	rs759806869	34620984	Skuladottir AT	2021-10-07	Commun Biol	A genome-wide meta-analysis uncovers six sequence variants conferring risk of vertigo.	Vertigo	48,072 European ancestry cases, 894,541 European ancestry controls	NA	4p16.1		rs759806869-T	NR	7E-6		1.85225		Affymetrix, Illumina [62056310] (imputed)	N
658	chr4	9586763	9586764	rs10049659	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4p16.1	intergenic	rs10049659-T	NR	8E-7		2.2197475	[1.34-3.1] unit increase	Illumina [> 6200000] (imputed)	N
658	chr4	9592032	9592033	rs189421534	26830138	Herold C	2016-02-02	Mol Psychiatry	Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.	Alzheimer disease and age of onset	2,478 European ancestry cases, 979 ancestry controls both from the same 1,070 families	NA	4p16.1	Intergenic	rs189421534-A	NR	2E-8	(between families)	5.646	unit increase	Affymetrix [up to 15107142] (imputed)	N
658	chr4	9599608	9599609	rs16898647	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs16898647-A	NR	2E-11		0.0333	[0.024-0.043] unit decrease	Affymetrix [9000000] (imputed)	N
658	chr4	9599652	9599653	rs114212755	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114212755-A	NR	4E-46		0.1038	[0.089-0.118] unit increase	Affymetrix [9000000] (imputed)	N
658	chr4	9633168	9633169	rs146799867	27149984	Degenhardt F	2016-05-05	Hum Mol Genet	Genome-wide association study of serum coenzyme Q10 levels identifies susceptibility loci linked to neuronal diseases.	Coenzyme Q10 levels	up to 1,300 European ancestry individuals	NA	4p16.1	Intergenic	rs146799867-T		4E-6		0.171	[0.098-0.244] unit decrease	Affymetrix, Illumina [up to 17017474] (imputed)	N
658	chr4	9633238	9633239	rs182591441	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4p16.1	AC097493.1	rs182591441-A	0.0021	7E-6		0.7178	[0.4-1.03] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
658	chr4	9637885	9637886	rs13140984	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4p16.1	Intergenic	rs13140984-G	0.37	5E-13		0.86	[0.83-0.90]	Affymetrix [710030]	N
658	chr4	9661522	9661523	rs149050104	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Cleft lip with or without cleft palate (bilateral vs unilateral)	15 Asian ancestry bilateral cleft lip cases, 184 Asian ancestry unilateral cleft lip cases, 121 Asian ancestry bilateral cleft palate cases, 205 Asian ancestry unilateral cleft palate cases, 13 European ancestry bilateral cleft lip cases, 151 European ancestry unilateral cleft lip cases, 159 European ancestry bilateral cleft palate cases, 315 European ancestry unilateral cleft palate cases, 15 Hispanic bilateral cleft lip cases,167 Hispanic unilateral cleft lip cases, 285 Hispanic bilateral cleft palate cases, 692 Hispanic unilateral cleft palate cases, 1 bilateral cleft lip case, 1 bilateral cleft palate case, 1 unilateral cleft palate case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4p16.1	NR	rs149050104-?	NR	4E-6		1.82	[1.61-2.05]	Illumina [539000] (imputed)	N
658	chr4	9688013	9688014	rs7691759	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4p16.1	intergenic	rs7691759-T	0.72	3E-16		0.21	[0.16-0.26] unit increase	Affymetrix [339439]	N
659	chr4	9719147	9719148	rs7683574	28604730	McKay JD	2017-06-12	Nat Genet	Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.	Lung cancer	29,266 European ancestry cases, 56,450 European ancestry controls	NA	4p16.1	MIR548I2, DRD5	rs7683574-T	0.354685391	4E-6		1.060866	[1.034541574-1.087860288]	Illumina [10439017] (imputed)	N
659	chr4	9722274	9722275	rs13121465	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p16.1	NR	rs13121465-T	0.34	1E-300		0.0766	[0.073-0.08] unit decrease	NR [NR]	N
659	chr4	9742722	9742723	rs11930943	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p16.1	NR	rs11930943-?	NR	3E-8				Illumina [7760689] (imputed)	N
659	chr4	9753029	9753030	rs114482706	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114482706-C	NR	2E-16		0.1084	[0.083-0.134] unit increase	Affymetrix [9000000] (imputed)	N
659	chr4	9773353	9773354	rs73221597	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	NR	rs73221597-?	NR	2E-20		0.07004	[0.055-0.085] unit decrease novel	Illumina [6108953] (imputed)	N
659	chr4	9787835	9787836	rs116142041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs116142041-A	NR	3E-56		0.1082	[0.095-0.122] unit decrease	Affymetrix [9000000] (imputed)	N
659	chr4	9790711	9790712	rs1850744	22566634	Benjamin DJ	2012-05-07	Proc Natl Acad Sci U S A	The genetic architecture of economic and political preferences.	Economic and political preferences	9,617 European ancestry individuals	NA	4p16.1	intergenic	rs1850744-T	NR	4E-6	(Risk)	0.305	[0.18-0.43] unit increase	Illumina [628922]	N
659	chr4	9807631	9807632	rs77026746	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77026746-G	NR	3E-15		0.0572	[0.043-0.072] unit increase	Affymetrix [9000000] (imputed)	N
659	chr4	9810713	9810714	rs73223775	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73223775-G	NR	5E-44		0.1057	[0.091-0.121] unit decrease	Affymetrix [9000000] (imputed)	N
659	chr4	9815439	9815440	rs56050634	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs56050634-T	NR	1E-46		0.0975	[0.084-0.111] unit decrease	Affymetrix [9000000] (imputed)	N
659	chr4	9816408	9816409	rs35582635	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs35582635-A	NR	5E-11		0.1136	[0.08-0.147] unit decrease	Affymetrix [9000000] (imputed)	N
659	chr4	9818115	9818116	rs7656342	27723756	Wang J	2016-10-10	Nat Genet	Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.	Gut microbiota (bacterial taxa)	1,812 European ancestry individuals	NA	4p16.1	SLC2A9, DRD5	rs7656342-A	NR	3E-9	(Unclassified Porphyromonadaceae)	0.39	unit increase	Affymetrix, Illumina [6344846] (imputed)	N
659	chr4	9828501	9828502	rs73223788	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73223788-T	NR	1E-39		0.0557	[0.047-0.064] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9835351	9835352	rs114919407	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114919407-C	NR	1E-11		0.0646	[0.046-0.083] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9849863	9849864	rs2139242	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs2139242-T	NR	1E-61		0.1499	[0.13-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9849863	9849864	rs2139242	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mumps	31,227 European ancestry cases, 54,153 European ancestry controls	NA	4p16.1	NR	rs2139242-?	NR	8E-7		0.3311	[0.2-0.46] unit increase	Illumina [at least 560000] (imputed)	N
660	chr4	9872455	9872456	rs11731759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs11731759-C	NR	7E-66		0.0832	[0.074-0.093] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9872580	9872581	rs56149009	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs56149009-T	NR	3E-16		0.0734	[0.056-0.091] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9894370	9894371	rs80204783	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs80204783-T	NR	4E-59		0.1	[0.088-0.112] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9895069	9895070	rs7698858	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs7698858-C	NR	3E-648		0.1491	[0.14-0.15] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9915324	9915325	rs6825187	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p16.1	SLC2A9	rs6825187-T	0.3573	2E-475		0.187461	[0.18-0.2] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
660	chr4	9915740	9915741	rs11722228	31985003	Boocock J	2020-01-27	Hum Mol Genet	Genomic dissection of 43 serum urate-associated loci provides multiple insights into molecular mechanisms of urate control.	Urate levels	110,238 European ancestry individuals, 21,471 East Asian individuals	NA	4p16.1	SLC2A9	rs11722228-C		2E-251		0.309	[0.31-0.31] mg/dl increase	NR [NR] (imputed)	N
660	chr4	9915740	9915741	rs11722228	31207883	Rivera-Paredez B	2019-06-14	Nutrients	Influence of Genetic and Non-Genetic Risk Factors for Serum Uric Acid Levels and Hyperuricemia in Mexicans.	Serum uric acid levels	396 Mexican ancestry individuals	3,693 Mexican ancestry individuals	4p16.1	SLC2A9	rs11722228-T	NR	1E-17		0.36	[0.27-0.44] unit increase	Illumina [7200000] (imputed)	N
660	chr4	9915740	9915741	rs11722228	25967671	Li C	2015-05-13	Nat Commun	Genome-wide association analysis identifies three new risk loci for gout arthritis in Han Chinese.	Gout	1,255 Han Chinese ancestry male cases, 1,848 Han Chinese ancestry male controls	3,020 Han Chinese ancestry male cases, 4,424 Han Chinese ancestry male controls	4p16.1	NR	rs11722228-T	0.274	8E-6		1.53	[NR]	Affymetrix [603505]	N
660	chr4	9915740	9915741	rs11722228	24513273	Yang B	2014-02-11	BMC Med Genomics	A genome-wide association study identifies common variants influencing serum uric acid concentrations in a Chinese population.	Serum uric acid levels	3,451 Han Chinese ancestry individuals	8,830 Chinese ancestry individuals	4p16.1	SLC2A9	rs11722228-T	0.31	9E-31		0.043	[0.035-0.051] unit increase	Affymetrix, Illumina [658288]	N
660	chr4	9915740	9915741	rs11722228	20139978	Kamatani Y	2010-02-07	Nat Genet	Genome-wide association study of hematological and biochemical traits in a Japanese population.	Urate levels	8,868 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs11722228-T	0.45	7E-24		0.164	[0.13-0.2] unit increase	Illumina [561583]	N
660	chr4	9916132	9916133	rs75181558	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75181558-G	NR	5E-390		0.3611	[0.34-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9917483	9917484	rs34213329	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs34213329-G	NR	2E-340		0.3201	[0.3-0.34] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9918132	9918133	rs13101683	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs13101683-A	NR	6E-40		0.1109	[0.094-0.127] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9918491	9918492	rs56223908	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		SLC2A9	rs56223908-?	NR	1E-8	(female)	1.36818	[NR] unit increase	Affymetrix [NR] (imputed)	N
660	chr4	9918491	9918492	rs56223908	27668658	Iotchkova V	2016-11-01	Nat Genet	Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps.	Cardiometabolic and hematological traits	up to 35,981 European ancestry individuals	up to 102,505 European ancestry individuals		SLC2A9	rs56223908-C		9E-15	(Uric acid)	0.137	[0.1-0.17] unit increase	Affymetrix, Illumina [17000000] (imputed)	N
660	chr4	9920346	9920347	rs10805346	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4p16.1	SLC2A9	rs10805346-C	0.43	1E-31	(men)	0.17	[0.14-0.2] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9920346	9920347	rs10805346	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	4p16.1	SLC2A9	rs10805346-C	0.44	4E-14	(men)	0.164	[0.12-0.21] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9922012	9922013	rs753482595	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4p16.1		rs753482595-?	NR	2E-25		1.12306	[0.91-1.33] unit decrease	NR [9800000] (imputed)	N
660	chr4	9922111	9922112	rs145688560	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs145688560-T	NR	3E-116		0.3893	[0.36-0.42] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9922166	9922167	rs16890979	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4p16.1	SLC2A9	rs16890979-T	0.17	5E-26		0.77	[0.74-0.81]	Affymetrix [710030]	N
660	chr4	9922166	9922167	rs16890979	26902266	Giri AK	2016-02-23	Sci Rep	Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.	Serum uric acid levels	1,109 Indo-European ancestry individuals	3,725 Indo-European ancestry individuals	4p16.1	SLC2A9	rs16890979-A	NR	3E-18		16.01	[12.41-19.61] unit decrease	Illumina [539662]	N
660	chr4	9922166	9922167	rs16890979	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4p16.1	SLC2A9	rs16890979-C	0.75	1E-29	(Men)	0.254	[0.21-0.3] kg/m2 increase	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9922166	9922167	rs16890979	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p16.1	DRD5	rs16890979-?	NR	9E-7	(uric acid)	0.209107	[0.13-0.29] unit decrease	Affymetrix [at least 2500000] (imputed)	N
660	chr4	9922166	9922167	rs16890979	18834626	Dehghan A	2008-10-01	Lancet	Association of three genetic loci with uric acid concentration and risk of gout: a genome-wide association study.	Urate levels	11,847 European ancestry individuals	11,024 European ancestry individuals, 3,843 African American individuals	4p16.1	SLC2A9	rs16890979-T	0.23	7E-168	(EA)	0.34	[0.30-0.38] unit decrease	Affymetrix, Illumina [up to 530683]	N
660	chr4	9922166	9922167	rs16890979	18759275	McArdle PF	2008-09-01	Arthritis Rheum	Association of a common nonsynonymous variant in GLUT9 with serum uric acid levels in old order amish.	Uric acid levels	408 Old Order Amish female individuals, 460 Old Order Amish male individuals	Framingham Heart Study (Sample size NR)	4p16.1	GLUT9	rs16890979-?	NR	1E-11		0.44	[0.32-0.56] mg/dl decrease in uric serum levels	Affymetrix [361034]	N
660	chr4	9922169	9922170	rs73225891	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73225891-G	NR	2E-103		0.1604	[0.15-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9923003	9923004	rs734553	21983786	Sulem P	2011-10-09	Nat Genet	Identification of low-frequency variants associated with gout and serum uric acid levels.	Serum uric acid levels	15,506 European ancestry individuals	NA	4p16.1	SLC2A9	rs734553-T	0.79	1E-80		0.24	[0.22-0.27] s.d. increase	Illumina [15957390] (imputed)	N
660	chr4	9923003	9923004	rs734553	21983786	Sulem P	2011-10-09	Nat Genet	Identification of low-frequency variants associated with gout and serum uric acid levels.	Gout	968 European ancestry cases, 40,000 European ancestry controls	NA	4p16.1	SLC2A9	rs734553-T	0.790	2E-7		1.39	[1.23-1.59]	Illumina [15957390] (imputed)	N
660	chr4	9923003	9923004	rs734553	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4p16.1	SLC2A9	rs734553-T	0.77	1E-41	(men)	0.22	[0.188-0.252] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
660	chr4	9923003	9923004	rs734553	19503597	Kolz M	2009-06-05	PLoS Genet	Meta-analysis of 28,141 individuals identifies common variants within five new loci that influence uric acid concentrations.	Uric acid levels	12,328 European ancestry males, 15,813 European ancestry females	NA	4p16.1	SLC2A9	rs734553-T	0.77	1E-192	(women)	0.4	[0.371-0.423] mg/dl increase	Affymetrix, Illumina [2493963] (imputed)	N
660	chr4	9923007	9923008	rs77935410	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77935410-G	NR	4E-44		0.1359	[0.12-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
660	chr4	9924318	9924319	rs6832439	24379826	Voruganti VS	2013-12-16	Front Genet	Genome-wide association analysis confirms and extends the association of SLC2A9 with serum uric acid levels to Mexican Americans.	Serum uric acid levels	632 Mexican American individuals	NA	4p16.1	SLC2A9	rs6832439-A	0.36	3E-8				Illumina [NR] (imputed)	N
660	chr4	9925691	9925692	rs938554	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4p16.1	SLC2A9	rs938554-C	0.23	6E-93	(urate)	0.035	[0.031-0.039] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
660	chr4	9926966	9926967	rs13129697	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4p16.1	SLC2A9	rs13129697-G	0.27	4E-157		0.52	[0.50-0.55]	Affymetrix [710030]	N
660	chr4	9926966	9926967	rs13129697	31960908	Nag A	2020-01-21	Hum Mol Genet	Genome-wide scan identifies novel genetic loci regulating salivary metabolite levels.	Salivary metabolite levels	1,419 European ancestry individuals	1,000 European ancestry individuals	4p16.1	SLC2A9	rs13129697-T	0.72	1E-14	(urate)	0.337	[0.25-0.42] unit increase	Illumina [9600000] (imputed)	N
660	chr4	9926966	9926967	rs13129697	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p16.1		rs13129697-?	NR	1E-7				NR [~ 8900000] (imputed)	N
660	chr4	9926966	9926967	rs13129697	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	4p16.1	SLC2A9	rs13129697-?		7E-19		0.1667	[0.13-0.20] unit decrease	Affymetrix [345072]	N
660	chr4	9926966	9926967	rs13129697	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4p16.1	SLC2A9	rs13129697-G	0.28	3E-111	(women)	0.412	[0.38-0.45] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9926966	9926967	rs13129697	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	4p16.1	SLC2A9	rs13129697-G	0.28	3E-59	(women)	0.376	[0.33-0.42] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9926966	9926967	rs13129697	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4p16.1	SLC2A9	rs13129697-G	0.28	8E-150	(Women)	0.403	[0.37-0.43] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
660	chr4	9926966	9926967	rs13129697	22229870	Karns R	2012-01-09	Ann Hum Genet	Genome-wide association of serum uric acid concentration: replication of sequence variants in an island population of the Adriatic coast of Croatia.	Uric acid levels	1,300 European ancestry individuals	NA	4p16.1	WDR1, SLC2A9	rs13129697-G	0.36	2E-19		28.99	[NR] umol/L decrease	Affymetrix [2241249] (imputed)	N
660	chr4	9926966	9926967	rs13129697	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4p16.1	SLC2A9	rs13129697-T	0.73	4E-13	(Gout)	1.52	[1.35-1.69]	Affymetrix, Illumina [~ 2500000] (imputed)	N
660	chr4	9926966	9926967	rs13129697	20884846	Yang Q	2010-09-30	Circ Cardiovasc Genet	Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors.	Urate levels	28,283 European ancestry individuals	22,054 European ancestry individuals	4p16.1	SLC2A9	rs13129697-G	0.27	2E-242	(Urate)	22.21	[20.90-23.52] umol/l decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
660	chr4	9926966	9926967	rs13129697	19260141	Zemunik T	2009-02-01	Croat Med J	Genome-wide association study of biochemical traits in Korcula Island, Croatia.	Biochemical measures	898 Korculan (founder/genetic isolate) individuals	NA	4p16.1	SLC2A9	rs13129697-C	0.25	1E-9	(uric acid)	0.29	[0.21-0.37] umol/l decrease	Illumina [316730]	N
660	chr4	9927552	9927553	rs13124563	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p16.1		rs13124563-?	NR	2E-8				NR [~ 8900000] (imputed)	N
660	chr4	9927619	9927620	rs6838021	31841133	Chen G	2019-12-16	Hum Mol Genet	Refining genome-wide associated loci for serum uric acid in individuals with African ancestry.	Serum uric acid levels	4,126 African ancestry individuals, 5,007 African American individuals	NA	4p16.1		rs6838021-?	NR	3E-35		0.1901	unit decrease	Affymetrix, Illumina [up to 18219730] (imputed)	N
660	chr4	9927619	9927620	rs6838021	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite ratios	Up to 5,591 European ancestry individuals	Up to 1,767 European ancestry individuals	4p16.1	SLC2A9	rs6838021-A	0.23	6E-68	(urate/histidine)	0.043	[0.037-0.049] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
660	chr4	9927893	9927894	rs62294282	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4p16.1		rs62294282-G	NR	2E-3949		0.3013	[0.3-0.31] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
660	chr4	9932881	9932882	rs114756544	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114756544-T	NR	1E-26		0.063	[0.051-0.075] unit increase	Affymetrix [9000000] (imputed)	N
660	chr4	9934743	9934744	rs737267	25898920	Korostishevsky M	2015-04-22	Eur J Hum Genet	Genomics and metabolomics of muscular mass in a community-based sample of UK females.	Blood metabolite levels	3,953 European ancestry individuals	NA	4p16.1	NR	rs737267-?	NR	2E-59	(Urate levels)			Illumina [2300000]	N
660	chr4	9934743	9934744	rs737267	18327257	Vitart V	2008-03-09	Nat Genet	SLC2A9 is a newly identified urate transporter influencing serum urate concentration, urate excretion and gout.	Urate levels	794 European ancestry individuals	706 European ancestry individuals	4p16.1	SLC2A9	rs737267-C	0.31	3E-9		0.88	[NR] uM decrease in uric acid [females only]	Illumina [308140]	N
660	chr4	9935909	9935910	rs6855911	17997608	Li S	2007-11-09	PLoS Genet	The GLUT9 gene is associated with serum uric acid levels in Sardinia and Chianti cohorts.	Urate levels	4,305 Sardinian individuals	1,301 European ancestry individuals	4p16.1	GLUT9	rs6855911-A	0.74	2E-16		0.32	[NR] mg/dl increase	Affymetrix [362129]	N
660	chr4	9939204	9939205	rs938558	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p16.1	SLC2A9	rs938558-G	0.469463	9E-38	(urate)	0.298	[0.25-0.34] unit decrease	Illumina [13039987] (imputed)	N
660	chr4	9941433	9941434	rs7675964	30305239	Macias-Kauffer LR	2018-10-01	Int J Cardiol	Genetic contributors to serum uric acid levels in Mexicans and their effect on premature coronary artery disease.	Serum uric acid levels	2153 Mexican ancestry individuals	NA	4p16.1	SLC2A9	rs7675964-?	NR	5E-17	(Conditioned on rs7678287)			Illumina [865896] (imputed)	N
660	chr4	9943610	9943611	rs773971807	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4p16.1		rs773971807-?	NR	8E-12		1.09905	[0.78-1.42] unit decrease	NR [9800000] (imputed)	N
660	chr4	9943623	9943624	rs149454410	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs149454410-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
660	chr4	9943623	9943624	rs149454410	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Hyperuricemia	847 Japanese ancestry cases, 4,640 Japanese ancestry controls	972 Japanese ancestry cases, 4,584 Japanese ancestry controls	4p16.1	SLC2A9	rs149454410-?	9.97606E-5	2E-16				Illumina [~ 244000]	N
660	chr4	9943623	9943624	rs149454410	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Estimated glomerular filtration rate	5,636 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs149454410-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
660	chr4	9943623	9943624	rs149454410	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Creatinine levels	5,636 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs149454410-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
660	chr4	9943623	9943624	rs149454410	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Chronic kidney disease	606 Japanese ancestry cases, 1,040 Japanese ancestry controls	2,517 Japanese ancestry cases, 885 Japanese ancestry controls	4p16.1	SLC2A9	rs149454410-?	9.65997E-5	2E-16				Illumina [~ 244000]	N
660	chr4	9944051	9944052	rs12498742	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Urate levels	49,825 European ancestry males, 60,522 European ancestry females	Up to 32,813 European ancestry individuals	4p16.1	SLC2A9	rs12498742-A	0.77	1E-700		0.373	[0.36-0.38] mg/dl increase	Affymetrix, Illumina, Perlegen [2450547] (imputed)	N
660	chr4	9946162	9946163	rs16891234	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout vs asymptomatic hyperuricemia	4,934 European ancestry cases, 56,948 European ancestry controls	2,115 European ancestry cases, 24,406 European ancestry controls	4p16.1	SLC2A9	rs16891234-C	0.24	3E-12		1.15	[1.11-1.20]	Affymetrix [710030]	N
660	chr4	9946655	9946656	rs4475146	23263486	Kottgen A	2012-12-23	Nat Genet	Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.	Gout	2,115 European ancestry cases, 67,259 European ancestry controls	1,036 European ancestry cases	4p16.1	SLC2A9	rs4475146-A	0.2237	4E-26		0.4682	[0.38-0.55] unit decrease	Affymetrix, Illumina [2538056] (imputed)	N
660	chr4	9956078	9956079	rs4481233	31784582	Chittoor G	2019-11-29	Sci Rep	Fine mapping and identification of serum urate loci in American Indians: The Strong Heart Family Study.	Serum urate levels	2,000 American Indian individuals	NA	4p16.1	SLC2A9	rs4481233-A		2E-20		9.28	unit decrease (z-score)	Illumina [162718]	N
660	chr4	9956078	9956079	rs4481233	21886157	Suhre K	2011-08-31	Nature	Human metabolic individuality in biomedical and pharmaceutical research.	Metabolic traits	2,820 European ancestry individuals	NA	4p16.1	SLC2A9	rs4481233-T	0.193	6E-34	(urate, histidine)	0.074	[NR] unit decrease	Affymetrix, Illumina [534665]	N
660	chr4	9960841	9960842	rs11338281	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4p16.1	SLC2A9	rs11338281-T	0.4738	4E-9		0.02121869	[0.014-0.028] unit increase	Affymetrix [~ 2500000] (imputed)	N
660	chr4	9961020	9961020	rs59834205	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Gout in chronic kidney disease	1,217 European ancestry cases, 3,724 European ancestry controls	NA	4p16.1	SLC2A9	rs59834205-C	0.83	1E-7		1.45	[1.27-1.67]	Illumina [9281895] (imputed)	N
661	chr4	9966379	9966380	rs7442295	18327256	Doring A	2008-03-09	Nat Genet	SLC2A9 influences uric acid concentrations with pronounced sex-specific effects.	Urate levels	1,644 European ancestry individuals	9,947 European ancestry individuals	4p16.1	SLC2A9	rs7442295-C	0.40	3E-70		0.35	[NR] mg/dl decrease in uric acid	Affymetrix [335152]	N
661	chr4	9966379	9966380	rs7442295	18179892	Wallace C	2008-01-10	Am J Hum Genet	Genome-wide association study identifies genes for biomarkers of cardiovascular disease: serum urate and dyslipidemia.	Urate levels	1,955 European ancestry hypertensive individuals	2,033 European ancestry individuals from 519 families, 1,461 European ancestry twins	4p16.1	WDR1, SLC2A9	rs7442295-A	0.79	2E-15		0.02	[0.02-0.03] mMol/L increase	Affymetrix [400496]	N
661	chr4	9978304	9978305	rs16868246	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4p16.1	SLC2A9	rs16868246-C	0.21	2E-14	(histidine)	0.01	[0.008-0.012] unit increase	Affymetrix, Illumina [2100000] (imputed)	N
661	chr4	9984540	9984541	rs9994216	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	SLC2A9	rs9994216-T	0.643	4E-27	(South Asian)	0.2244	[0.18-0.27] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
661	chr4	9985375	9985376	rs7679724	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	SLC2A9	rs7679724-T	0.5865	4E-199	(East Asian)	0.1765	[0.16-0.19] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
661	chr4	9985375	9985376	rs7679724	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals	at least 101,293 European ancestry individuals	4p16.1	SLC2A9	rs7679724-T	0.586	2E-224	(Japanese)	0.13	[0.12-0.14] unit increase	Illumina [5864938] (imputed)	N
661	chr4	9985375	9985376	rs7679724	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs7679724-?	NR	6E-184		0.1239	[0.12-0.13] unit increase novel	Illumina [6108953] (imputed)	N
661	chr4	9985444	9985445	rs7660895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p16.1	SLC2A9	rs7660895-A	0.427965	5E-11	(allantoin)	0.151	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
661	chr4	9985444	9985445	rs7660895	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	1,509 European ancestry individuals	4p16.1	SLC2A9	rs7660895-A	0.427965	5E-11	(allantoin)	0.151	[0.11-0.2] unit decrease	Illumina [13039987] (imputed)	N
661	chr4	9985595	9985596	rs7680126	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4p16.1	SLC2A9	rs7680126-G	0.22	3E-92		0.271	[0.25-0.3] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
661	chr4	9985595	9985596	rs7680126	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in obese individuals	4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals	NA	4p16.1	SLC2A9	rs7680126-G	0.21	6E-62		0.298	[0.26-0.33] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
661	chr4	9985595	9985596	rs7680126	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in lean individuals	up to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals	NA	4p16.1	SLC2A9	rs7680126-G	0.22	2E-134		0.341	[0.31-0.37] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
661	chr4	9987225	9987226	rs3733590	29408531	Zhang D	2018-02-02	Gene	The polymorphism rs671 at ALDH2 associated with serum uric acid levels in Chinese Han males: A genome-wide association study.	Serum uric acid levels	1,634 Han Chinese ancestry individuals	2,818 Han Chinese ancestry individuals	4p16.1	SLC2A9	rs3733590-G	NR	2E-13		0.02	[NR] unit decrease Discovery	Illumina [532842]	N
661	chr4	9987323	9987324	rs3733589	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal overload gout	560 Japanese ancestry cases, 1,213 Japanese ancestry controls	618 Japanese ancestry cases, 1,268 Japanese ancestry controls	4p16.1	SLC2A9	rs3733589-G	0.57	2E-13		1.47	[1.32-1.63]	Illumina [570442]	N
661	chr4	9987354	9987355	rs143395481	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4p16.1		rs143395481-?	NR	2E-10		1.04136	[0.71-1.37] unit decrease	NR [9800000] (imputed)	N
661	chr4	9989232	9989233	rs4385059	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	NR	rs4385059-?	NR	4E-19		0.1962	[0.15-0.24] unit decrease novel	Illumina [6108953] (imputed)	N
661	chr4	9992861	9992862	rs62296002	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs62296002-T	NR	3E-187		0.1602	[0.15-0.17] unit increase	Affymetrix [9000000] (imputed)	N
661	chr4	9994214	9994215	rs6449213	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Urate levels	2077 British ancestry individuals from 6863 families.	NA	4p16.1	SLC2A9	rs6449213-T	0.1652	2E-17				Illumina [24111857] (imputed)	N
661	chr4	9994214	9994215	rs6449213	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	4p16.1	SLC2A9	rs6449213-?	NR	3E-12				Illumina [~ 550000]	N
661	chr4	9994214	9994215	rs6449213	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	4p16.1	SLC2A9	rs6449213-?	NR	2E-7	(Obese)			Illumina [~ 550000]	N
661	chr4	9995181	9995182	rs3775948	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	129,405 East Asian ancestry individuals	NA	4p16.1		rs3775948-C	0.580471	4E-227		0.112921	[0.11-0.12] unit increase	Illumina [13475706] (imputed)	N
661	chr4	9995181	9995182	rs3775948	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Renal underexcretion gout	654 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4p16.1	SLC2A9	rs3775948-C	0.573	8E-22		1.89	[1.66-2.15]	Illumina [7206774] (imputed)	N
661	chr4	9995181	9995182	rs3775948	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout (combined type)	905 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4p16.1	SLC2A9	rs3775948-C	0.573	1E-19		1.67	[1.50-1.87]	Illumina [7206774] (imputed)	N
661	chr4	9995181	9995182	rs3775948	31207883	Rivera-Paredez B	2019-06-14	Nutrients	Influence of Genetic and Non-Genetic Risk Factors for Serum Uric Acid Levels and Hyperuricemia in Mexicans.	Serum uric acid levels	396 Mexican ancestry individuals	3,693 Mexican ancestry individuals	4p16.1	SLC2A9	rs3775948-G	0.344	8E-64		0.4	[0.35-0.44] unit decrease	Illumina [7200000] (imputed)	N
661	chr4	9995181	9995182	rs3775948	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	4p16.1	SLC2A9	rs3775948-C	0.692	1E-300	(EA)	0.25714287	[0.25-0.27] unit increase	Illumina [1986983] (imputed)	N
661	chr4	9995181	9995182	rs3775948	30993211	Nakatochi M	2019-04-08	Commun Biol	Genome-wide meta-analysis identifies multiple novel loci associated with serum uric acid levels in Japanese individuals.	Serum uric acid levels	121,745 Japanese ancestry individuals, at least 88,461 European ancestry individuals	NA	4p16.1	SLC2A9	rs3775948-C	0.5796	4E-218	(Japanese)	0.1269	[0.12-0.13] unit increase	Illumina [1986983] (imputed)	N
661	chr4	9995181	9995182	rs3775948	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	4p16.1	SLC2A9	rs3775948-?		9E-32		0.2208	[0.18-0.26] unit decrease	Affymetrix [345072]	N
661	chr4	9995181	9995182	rs3775948	29124443	Yasukochi Y	2017-11-09	Mol Genet Genomics	Identification of CDC42BPG as a novel susceptibility locus for hyperuricemia in a Japanese population.	Serum uric acid levels	5,847 Japanese ancestry individuals	NA	4p16.1	SLC2A9	rs3775948-G	0.435	2E-16		10.62	[8.18-13.06] umol/L decrease	Illumina [~ 244000]	N
661	chr4	9995181	9995182	rs3775948	26902266	Giri AK	2016-02-23	Sci Rep	Genome wide association study of uric acid in Indian population and interaction of identified variants with Type 2 diabetes.	Serum uric acid levels	1,109 Indo-European ancestry individuals	3,725 Indo-European ancestry individuals	4p16.1	SLC2A9	rs3775948-G	NR	2E-19		15.45	[12.10-18.80] unit decrease	Illumina [539662]	N
661	chr4	9995181	9995182	rs3775948	25646370	Matsuo H	2015-02-02	Ann Rheum Dis	Genome-wide association study of clinically defined gout identifies multiple risk loci and its association with clinical subtypes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,048 Japanese ancestry cases, 1,334 Japanese ancestry controls	4p16.1	SLC2A9	rs3775948-G	0.56	6E-27		1.61	[1.47-1.75]	Illumina [570442]	N
661	chr4	9995181	9995182	rs3775948	22797727	Okada Y	2012-07-15	Nat Genet	Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations.	Renal function-related traits (urea)	21,417 East Asian ancestry individuals	11,657 East Asian ancestry individuals	4p16.1	SLC2A9	rs3775948-C	0.59	2E-65		0.1786	[0.16-0.20] mg/dl increase	Affymetrix, Illumina [2278301] (imputed)	N
661	chr4	9995181	9995182	rs3775948	21294900	Charles BA	2011-02-04	BMC Med Genomics	A genome-wide association study of serum uric acid in African Americans.	Uric acid levels	1,017 African American individuals	NA	4p16.1	SLC2A9	rs3775948-G	0.34	1E-8		0.211	[0.14-0.28] unit decrease	Affymetrix [2366856] (imputed)	N
661	chr4	9995239	9995240	rs3775947	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	SLC2A9	rs3775947-T	0.691	1E-1486		0.2765	[0.27-0.28] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
661	chr4	9995239	9995240	rs3775947	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4p16.1	NR	rs3775947-T	0.6719	2E-297	(men)	0.1954	[0.19-0.21] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
661	chr4	9995255	9995256	rs3775946	32238385	Nakayama A	2020-04-01	Ann Rheum Dis	Subtype-specific gout susceptibility loci and enrichment of selection pressure on ABCG2 and ALDH2 identified by subtype genome-wide meta-analyses of clinically defined gout patients.	Gout	3,053 Japanese ancestry male cases, 4,554 Japanese ancestry male controls	NA	4p16.1	SLC2A9	rs3775946-G	0.569	4E-41		1.63	[1.52-1.75]	Illumina [7206774] (imputed)	N
661	chr4	9995255	9995256	rs3775946	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	SLC2A9	rs3775946-A	0.3413	5E-87	(AA)	0.264	[0.24-0.29] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
661	chr4	9996889	9996890	rs13111638	30181573	Jing J	2018-09-04	Sci Rep	Genetics of serum urate concentrations and gout in a high-risk population, patients with chronic kidney disease.	Serum urate levels in chronic kidney disease	4,941 European ancestry cases	NA	4p16.1	SLC2A9	rs13111638-T	0.19	2E-13		0.31	[0.23-0.39] mg/dl decrease	Illumina [9281895] (imputed)	N
661	chr4	9997302	9997303	rs3733588	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	4p16.1	SLC2A9	rs3733588-A	0.5789	2E-27		0.1922	[0.16-0.23] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
661	chr4	9999958	9999958	rs35344864	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Basophil count	474,001 European ancestry individuals	NA	4p16.1	NR	rs35344864-I	0.244105	1E-10		0.015951	[0.011-0.021] SD unit decrease	Affymetrix, Illumina [50036608] (imputed)	N
661	chr4	10000355	10000356	rs78002041	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs78002041-A	NR	2E-57		0.1503	[0.13-0.17] unit increase	Affymetrix [9000000] (imputed)	N
661	chr4	10000500	10000501	rs7678287	30305239	Macias-Kauffer LR	2018-10-01	Int J Cardiol	Genetic contributors to serum uric acid levels in Mexicans and their effect on premature coronary artery disease.	Serum uric acid levels	2153 Mexican ancestry individuals	NA	4p16.1	SLC2A9	rs7678287-A	NR	2E-42		0.47	[NR] unit decrease	Illumina [865896] (imputed)	N
661	chr4	10000946	10000947	rs7683856	31841133	Chen G	2019-12-16	Hum Mol Genet	Refining genome-wide associated loci for serum uric acid in individuals with African ancestry.	Serum uric acid levels	4,126 African ancestry individuals, 5,007 African American individuals	NA	4p16.1		rs7683856-?	NR	2E-44		0.2513	unit decrease	Affymetrix, Illumina [up to 18219730] (imputed)	N
661	chr4	10001860	10001861	rs1014290	31289104	Kawamura Y	2019-07-08	Ann Rheum Dis	Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout.	Gout vs. Hyperuricemia	945 Japanese ancestry cases, 1,003 Japanese ancestry controls	1,915 Japanese ancestry cases, 2,146 Japanese ancestry controls	4p16.1	SLC2A9	rs1014290-T	0.611	2E-9		1.3	[1.19-1.41]	Illumina [569200]	N
661	chr4	10001860	10001861	rs1014290	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Renal underexcretion gout	619 Japanese ancestry cases, 1,213 Japanese ancestry controls	696 Japanese ancestry cases, 1,268 Japanese ancestry controls	4p16.1	SLC2A9	rs1014290-T	0.564	9E-25		1.69	[1.53-1.87]	Illumina [570442]	N
661	chr4	10001860	10001861	rs1014290	27899376	Nakayama A	2016-11-29	Ann Rheum Dis	GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes.	Gout	945 Japanese ancestry cases, 1,213 Japanese ancestry controls	1,396 Japanese ancestry cases, 1,268 Japanese ancestry controls, 1,319 European ancestry cases, 514 European ancestry controls, 971 Polynesian ancestry cases, 565 Polynesian ancestry controls	4p16.1	SLC2A9	rs1014290-T	0.564	7E-26	(Japanese)	1.57	[1.44-1.70]	Illumina [570442]	N
661	chr4	10002664	10002665	rs9991278	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4p16.1	SLC2A9	rs9991278-?	NR	5E-21	(urate)	0.02992	[NR] unit decrease	Affymetrix [655658]	N
661	chr4	10008963	10008964	rs75896783	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75896783-T	NR	3E-26		0.0788	[0.064-0.093] unit increase	Affymetrix [9000000] (imputed)	N
661	chr4	10009916	10009917	rs3796839	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p16.1	NR	rs3796839-?	NR	3E-42		0.095	[0.082-0.108] unit decrease	Illumina [7760689] (imputed)	N
661	chr4	10015864	10015865	rs3796832	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p16.1		rs3796832-T	NR	1E-12		0.0094	[0.0069-0.0119] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
661	chr4	10018079	10018080	rs6857001	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs6857001-?	NR	2E-8				NR [~ 8900000] (imputed)	N
661	chr4	10020692	10020693	rs547994251	34226706	Barton AR	2021-07-05	Nat Genet	Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.	Urate levels	437,354 European ancestry individuals	NA	4p16.1		rs547994251-?	NR	6E-14		1.41366	[1.05-1.78] unit decrease	NR [9800000] (imputed)	N
661	chr4	10023606	10023607	rs61112052	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	NR	rs61112052-?	NR	4E-72		0.1545	[0.14-0.17] unit increase novel	Illumina [6108953] (imputed)	N
661	chr4	10027794	10027795	rs543431433	28604731	Hammerschlag AR	2017-06-12	Nat Genet	Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits.	Daytime sleepiness	112,717 European ancestry cases and controls	NA	4p16.1	NR	rs543431433-A	0.0028	4E-9		0.26	[0.17-0.35] unit increase	Affymetrix [at least 12428592] (imputed)	N
661	chr4	10028866	10028867	rs34325511	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	NR	rs34325511-?	NR	3E-49	(conditional on round 2)	0.07581537	[0.066-0.086] unit decrease novel	Illumina [6108953] (imputed)	N
661	chr4	10033537	10033538	rs12506122	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p16.1		rs12506122-?	NR	2E-8				NR [~ 8900000] (imputed)	N
661	chr4	10036145	10036146	rs76099163	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Serum uric acid levels	109,029 Japanese ancestry individuals	NA	4p16.1	NR	rs76099163-?	NR	2E-25		0.09725	[0.079-0.116] unit decrease novel	Illumina [6108953] (imputed)	N
661	chr4	10036338	10036339	rs3733585	24516586	Wu T	2014-02-06	PLoS One	Evidence of gene-environment interaction for two genes on chromosome 4 and environmental tobacco smoke in controlling the risk of nonsyndromic cleft palate.	Cleft plate (environmental tobacco smoke interaction)	259 Asian ancestry cases and their unaffected parents,  272 European ancestry cases and their unaffected parents, 19 cases and their unaffected parents	NA	4p16.1	WDR1, SLC2A9	rs3733585-C	0.412	2E-6		2.58	[1.61-4.14]	Illumina [~ 498000]	N
661	chr4	10042685	10042686	rs75245044	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75245044-A	NR	3E-36		0.1328	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
661	chr4	10050140	10050141	rs733175	22005930	Hollingworth P	2011-10-18	Mol Psychiatry	Genome-wide association study of Alzheimer's disease with psychotic symptoms.	Psychosis and Alzheimer's disease	1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families	NA	4p16.1	SLC2A9	rs733175-?	0.18	5E-6		1.37	[NR]	Illumina [1847262] (imputed)	N
661	chr4	10056375	10056376	rs7671266	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	4p16.1	WDR1	rs7671266-T	0.21	9E-71	(UA)	0.305	[0.27-0.34] umol/l decrease	Illumina [NR] (imputed)	N
661	chr4	10061146	10061147	rs75341455	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4p16.1	WDR1	rs75341455-T	0.03	5E-17		0.58	[0.51-0.66]	Affymetrix [710030]	N
661	chr4	10062325	10062326	rs6834555	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs6834555-A	NR	2E-1580		0.2453	[0.24-0.25] unit increase	Affymetrix [9000000] (imputed)	N
661	chr4	10068834	10068835	rs10939690	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p16.1		rs10939690-A	0.32	2E-10		6.4	z score increase	Affymetrix [9061022] (imputed)	N
661	chr4	10079376	10079377	rs34193855	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs34193855-T	NR	2E-196		0.3663	[0.34-0.39] unit decrease	Affymetrix [9000000] (imputed)	N
661	chr4	10084945	10084946	rs143909619	33623009	Thareja G	2021-02-23	Nat Commun	Whole genome sequencing in the Middle Eastern Qatari population identifies genetic associations with 45 clinically relevant traits.	Uric acid levels	6,013 Greater Middle Eastern (Middle Eastern, North African or Persian) individuals	NA	4p16.1		rs143909619-A	0.0527	1E-7		0.19	[0.11-0.27] unit increase	Illumina [7880615]	N
661	chr4	10090929	10090930	rs3775932	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p16.1		rs3775932-A	NR	8E-11		0.0105	[0.0074-0.0136] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
661	chr4	10090929	10090930	rs3775932	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4p16.1	WDR1	rs3775932-A	0.5077	5E-12		0.0018	[0.0012-0.0024] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
662	chr4	10093650	10093651	rs3796822	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p16.1	WDR1	rs3796822-A	0.6971	6E-12		0.1293	[0.092-0.166] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
662	chr4	10094930	10094931	rs3822241	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p16.1	NR	rs3822241-A	0.42	1E-9		0.00666617	[0.0045-0.0088] unit increase	NR [9732723] (imputed)	N
662	chr4	10096133	10096134	rs2278121	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Neuroticism	170,911 European ancestry individuals	NA	4p16.1	NR	rs2278121-A	0.451	9E-6		0.015303924	[0.0086-0.0221] unit increase	Affymetrix [up to 6544775] (imputed)	N
662	chr4	10099017	10099018	rs3822238	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	4p16.1	WDR1	rs3822238-T	0.6597	3E-13		0.1345	[0.098-0.171] unit increase	Affymetrix, Illumina [6129701] (imputed)	N
662	chr4	10099339	10099340	rs13441	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p16.1		rs13441-T	0.3109	5E-12		0.12053822	[0.087-0.154] mmHg decrease	Affymetrix, Illumina [242866] (imputed)	N
662	chr4	10099380	10099381	rs182603736	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs182603736-A	NR	3E-20		0.2644	[0.21-0.32] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10104768	10104769	rs79813373	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79813373-T	NR	5E-10		0.1041	[0.071-0.137] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10104787	10104788	rs717614	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p16.1	NR	rs717614-C	0.52	1E-300		0.144	[0.14-0.15] unit increase	NR [NR]	N
662	chr4	10107438	10107439	rs35411989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p16.1	NR	rs35411989-T	NR	3E-11		0.0159	[0.011-0.021] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10107438	10107439	rs35411989	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p16.1	NR	rs35411989-T	NR	2E-11		0.0159	[0.011-0.021] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10116851	10116852	rs12501855	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p16.1	NR	rs12501855-C	0.2174	3E-13				NR [9056863] (imputed)	N
662	chr4	10117429	10117430	rs73212886	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p16.1		rs73212886-T	0.23	6E-10		6.18	z score increase	Affymetrix [9061022] (imputed)	N
662	chr4	10118744	10118745	rs3822259	29892015	Roselli C	2018-06-11	Nat Genet	Multi-ethnic genome-wide association study for atrial fibrillation.	Atrial fibrillation	55,114 European ancestry cases, 482,295 European ancestry controls, 8,180 Japanese ancestry cases, 28,612 Japanese ancestry controls, 1,307 African American ancestry cases, 7,660 African American ancestry controls, 845 Hispanic cases, 4,177 Hispanic controls	NA	4p16.1	WDR1	rs3822259-T	0.68	2E-9		1.05	[1.03-1.06]	Affymetrix, Illumina [up to 12149979] (imputed)	N
662	chr4	10122664	10122665	rs62286563	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p16.1	WDR1	rs62286563-T	0.9792	1E-12		0.103135	[0.075-0.132] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
662	chr4	10135420	10135421	rs10009765	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs10009765-C	NR	1E-181		0.0698	[0.065-0.075] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10135660	10135661	rs79038252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79038252-C	NR	3E-99		0.1472	[0.13-0.16] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10139935	10139936	rs114999462	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114999462-A	NR	2E-13		0.0624	[0.046-0.079] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10143785	10143786	rs4697714	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4p16.1	SLC2A9	rs4697714-?	NR	2E-19	(urate)	0.0292	[NR] unit decrease	Affymetrix [655658]	N
662	chr4	10148121	10148122	rs74475455	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs74475455-A	NR	1E-258		0.3128	[0.29-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10152301	10152302	rs4697939	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs4697939-A	NR	5E-250		0.3126	[0.29-0.33] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10153232	10153233	rs737601	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p16.1	NR	rs737601-T	0.92	3E-49		0.0494	[0.043-0.056] unit decrease	NR [NR]	N
662	chr4	10153470	10153471	rs115545297	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs115545297-C	NR	4E-25		0.0568	[0.046-0.068] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10155111	10155112	rs77326889	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77326889-C	NR	2E-21		0.1243	[0.099-0.15] unit increase	Affymetrix [9000000] (imputed)	N
662	chr4	10176593	10176594	rs115145962	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs115145962-C	NR	4E-12		0.0614	[0.044-0.079] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10182835	10182836	rs115602652	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs115602652-C	NR	4E-169		0.2925	[0.27-0.31] unit decrease	Affymetrix [9000000] (imputed)	N
662	chr4	10203461	10203462	rs17389035	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs17389035-T	NR	6E-20		0.0548	[0.043-0.067] unit increase	Affymetrix [9000000] (imputed)	N
663	chr4	10240805	10240806	rs74534386	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs74534386-A	NR	3E-298		0.3588	[0.34-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr4	10250546	10250547	rs78254251	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs78254251-C	NR	4E-43		0.0866	[0.074-0.099] unit increase	Affymetrix [9000000] (imputed)	N
663	chr4	10269777	10269778	rs79297984	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79297984-T	NR	7E-37		0.1444	[0.12-0.17] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr4	10272428	10272429	rs6833292	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4p16.1	WDR1	rs6833292-T	0.4362	9E-12		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
663	chr4	10274993	10274994	rs17407555	21688384	Wang KS	2011-06-17	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association analysis of age at onset in schizophrenia in a European-American sample.	Schizophrenia (age at onset)	1,162 European ancestry cases	1,068 European ancestry cases	4p16.1	RAF1P1, WDR1	rs17407555-?		5E-6		1.501	[NR] unit decrease	Affymetrix [722112]	N
663	chr4	10286300	10286301	rs4698014	23703922	Li WD	2013-01-02	Obesity (Silver Spring)	A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls.	Uric acid levels	487 European ancestry obese individuals, 472 non-obese individuals	NA	4p16.1	SLC2A9	rs4698014-?	NR	8E-13	(Non-obese)			Illumina [~ 550000]	N
663	chr4	10292967	10292968	rs11730631	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4p16.1	intergenic	rs11730631-?	NR	2E-16	(urate)	0.0263	[NR] unit decrease	Affymetrix [655658]	N
663	chr4	10296113	10296114	rs6839820	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4p16.1	Intergenic	rs6839820-C	0.33	8E-27		1.24	[1.19-1.29]	Affymetrix [710030]	N
663	chr4	10302358	10302359	rs73224420	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73224420-A	NR	4E-134		0.1172	[0.11-0.13] unit increase	Affymetrix [9000000] (imputed)	N
663	chr4	10316349	10316350	rs17477692	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs17477692-G	NR	4E-138		0.2341	[0.22-0.25] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr4	10317022	10317023	rs9999470	29453348	Chen CJ	2018-02-16	Sci Rep	ABCG2 contributes to the development of gout and hyperuricemia in a genome-wide association study.	Gout	747 East Asian ancestry cases, 2,071 East Asian ancestry controls	NA	4p16.1	SLC2A9	rs9999470-C	0.337	2E-6		1.65	[1.07-2.54] (CC genotype)	Affymetrix [537478]	N
663	chr4	10322399	10322400	rs79824542	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79824542-G	NR	4E-55		0.1325	[0.12-0.15] unit increase	Affymetrix [9000000] (imputed)	N
663	chr4	10324159	10324160	rs9291683	17903296	Kiel DP	2007-09-19	BMC Med Genet	Genome-wide association with bone mass and geometry in the Framingham Heart Study.	Bone mineral density	Up to 1,141 individuals from 241 families	NA	4p16.1	intergenic	rs9291683-?	NR	2E-6	(BUA)			Affymetrix [70897]	N
663	chr4	10328334	10328335	rs79020759	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79020759-G	NR	7E-245		0.2564	[0.24-0.27] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr4	10331293	10331294	rs4698036	21943158	Middelberg RP	2011-09-24	BMC Med Genet	Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.	Cardiovascular disease risk factors	11,683 European ancestry individuals	NA	4p16.1	intergenic	rs4698036-G	0.22	2E-52	(UA)	0.257	[0.22-0.29] umol/l decrease	Illumina [NR] (imputed)	N
663	chr4	10335495	10335496	rs75816008	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75816008-T	NR	1E-382		0.2804	[0.27-0.29] unit decrease	Affymetrix [9000000] (imputed)	N
663	chr4	10341346	10341347	rs17479116	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs17479116-T	NR	2E-34		0.1104	[0.093-0.128] unit increase	Affymetrix [9000000] (imputed)	N
663	chr4	10345368	10345369	rs1035051	32514006	Cho SK	2020-06-08	Sci Rep	Polygenic analysis of the effect of common and low-frequency genetic variants on serum uric acid levels in Korean individuals.	Serum uric acid levels	6,881 Korean ancestry individuals	3,914 Korean ancestry individuals	4p16.1	WDR1, ZNF518B	rs1035051-T	0.4067	3E-15		0.1403	[0.11-0.18] unit decrease	Affymetrix, Illumina [6129701] (imputed)	N
664	chr4	10360090	10360091	rs76835013	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs76835013-T	NR	2E-250		0.1514	[0.14-0.16] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10362700	10362701	rs77732900	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77732900-T	NR	2E-51		0.1273	[0.11-0.14] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10369410	10369411	rs79260227	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79260227-G	NR	2E-29		0.1463	[0.12-0.17] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10370536	10370537	rs62286747	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs62286747-T	NR	2E-151		0.1401	[0.13-0.15] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10384277	10384278	rs59420943	29558500	Lee J	2018-03-20	PLoS One	Genome-wide association analysis identifies multiple loci associated with kidney disease-related traits in Korean populations.	Uric acid levels	7,064 Korean ancestry individuals	3,703 Korean ancestry individuals	4p16.1	intergenic	rs59420943-?		8E-15		0.1473	[0.11-0.18] unit increase	Affymetrix [345072]	N
664	chr4	10387697	10387698	rs73224465	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs73224465-C	NR	2E-22		0.1002	[0.08-0.12] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10398634	10398635	rs4698048	28502801	Law MH	2017-05-11	J Invest Dermatol	Genome-Wide Association Shows that Pigmentation Genes Play a Role in Skin Aging.	Skin aging (microtopography measurement)	5,087 individuals	NA	4p16.1	ZNF518B	rs4698048-G		7E-6		0.0765	[NR] unit decrease	Illumina [at least 233546] (imputed)	N
664	chr4	10401222	10401223	rs10017305	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p16.1	ZNF518B	rs10017305-T	0.7092	6E-482		0.214079	[0.21-0.22] mg/dL increase	Affymetrix, Illumina [8217339] (imputed)	N
664	chr4	10403544	10403545	rs11943276	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4p16.1	intergenic	rs11943276-?	NR	8E-14	(urate)	0.02262	[NR] unit decrease	Affymetrix [655658]	N
664	chr4	10407571	10407572	rs4643800	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs4643800-T	NR	7E-1954		0.273	[0.27-0.28] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr4	10431131	10431132	rs79896211	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs79896211-G	NR	2E-19		0.0589	[0.046-0.072] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10440924	10440925	rs73224492	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals	NA	4p16.1	ZNF518B	rs73224492-A	0.8745	9E-59		0.094051	[0.083-0.105] mg/dL decrease	Affymetrix, Illumina [8217339] (imputed)	N
664	chr4	10444105	10444106	rs34208161	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs34208161-G	NR	2E-55		0.1439	[0.13-0.16] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr4	10446706	10446707	rs140550247	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs140550247-T	NR	8E-19		0.3142	[0.24-0.38] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr4	10447906	10447907	rs72648876	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs72648876-T	NR	1E-54		0.1149	[0.1-0.13] unit increase	Affymetrix [9000000] (imputed)	N
664	chr4	10477164	10477165	rs73226405	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	4p16.1	RP11-136I13.2	rs73226405-T	0.094	3E-6		2.25	[1.60-3.17]	Illumina [3905175] (imputed)	N
664	chr4	10482747	10482748	rs57755073	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs57755073-A	NR	3E-29		0.0799	[0.066-0.094] unit decrease	Affymetrix [9000000] (imputed)	N
664	chr4	10483365	10483366	rs28498086	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs28498086-?	NR	9E-14				NR [~ 8900000] (imputed)	N
665	chr4	10486341	10486342	rs57629029	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	CLNK	rs57629029-T	0.7121	3E-60	(East Asian)	0.1037	[0.091-0.116] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
665	chr4	10491550	10491551	rs13121626	32573913	Sherva R	2020-06-23	Alzheimers Dement	Genome-wide association study of rate of cognitive decline in Alzheimer's disease patients identifies novel genes and pathways.	Rate of cognitive decline in Alzheimer's disease	3,946 European ancestry cases	NA	4p16.1	NR	rs13121626-A	NR	2E-6	(GEE model)	0.51147	[0.3-0.72] unit decrease	NR [NR] (imputed)	N
665	chr4	10498494	10498495	rs59325794	28181694	Chesi A	2017-02-09	J Bone Miner Res	A Genomewide Association Study Identifies Two Sex-Specific Loci, at SPTB and IZUMO3, Influencing Pediatric Bone Mineral Density at Multiple Skeletal Sites.	Pediatric bone mineral content (radius)	488 European ancestry female children, 445 European ancestry male children	245 European ancestry female children, 241 European ancestry male children	4p16.1	NR	rs59325794-T	0.057	6E-6		0.33617	[0.19-0.48] unit increase	Illumina [~ 6600000] (imputed)	N
665	chr4	10499343	10499344	rs12504795	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	CLNK	rs12504795-T	0.7406	4E-101		0.075	[0.068-0.082] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
665	chr4	10499343	10499344	rs12504795	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4p16.1	NR	rs12504795-T	0.2603	1E-63	(women)	0.0848	[0.075-0.095] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
665	chr4	10499343	10499344	rs12504795	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	174,111 European, East Asian, African American, South Asian and Hispanic ancestry men, 172,102 European, East Asian, African American, South Asian and Hispanic ancestry women	NA	4p16.1	NR	rs12504795-T	0.2589	4E-26	(men)	0.0587	[0.048-0.07] mg/dL decrease	Affymetrix, Illumina [8249849] (imputed)	N
665	chr4	10505785	10505786	rs7675668	31578528	Tin A	2019-10-02	Nat Genet	Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels.	Urate levels	288,649 European ancestry individuals, 125,725 East Asian ancestry individuals, 33,671 African American individuals, 9,037 South Asian ancestry individuals, 608 Hispanic individuals	NA	4p16.1	CLNK	rs7675668-C	0.8368	9E-9	(South Asian)	0.1581	[0.1-0.21] mg/dL increase	Affymetrix, Illumina [8249849] (imputed)	N
665	chr4	10514680	10514681	rs16869379	33832965	Sandoval-Plata G	2021-04-08	Ann Rheum Dis	Variants in urate transporters, ADH1B, GCKR and MEPE genes associate with transition from asymptomatic hyperuricaemia to gout: results of the first gout versus asymptomatic hyperuricaemia GWAS in Caucasians using data from the UK Biobank.	Gout	7,049 European ancestry cases, 64,424 European ancestry controls	NA	4p16.1	CLNK	rs16869379-C	0.31	5E-23		0.81	[0.78-0.84]	Affymetrix [710030]	N
665	chr4	10515141	10515142	rs114623663	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114623663-T	NR	4E-27		0.098	[0.08-0.116] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr4	10524670	10524671	rs997219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs997219-A	NR	5E-155		0.0634	[0.059-0.068] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr4	10529150	10529151	rs78358980	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs78358980-T	NR	9E-73		0.209	[0.19-0.23] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr4	10533534	10533535	rs77796046	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77796046-G	NR	1E-21		0.0579	[0.046-0.07] unit increase	Affymetrix [9000000] (imputed)	N
665	chr4	10544124	10544125	rs76356518	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs76356518-G	NR	7E-137		0.2077	[0.19-0.22] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr4	10558319	10558320	rs17382947	33232274	Mohammadnejad A	2020-11-24	Aging (Albany NY)	Generalized correlation coefficient for genome-wide association analysis of cognitive ability in twins.	Cognitive function (generalized correlation coefficient)	278 Chinese ancestry dizygotic twins	NA	4p16.1	NR	rs17382947-?	NR	6E-7			[NR]	Illumina [5432814] (imputed)	N
665	chr4	10566958	10566959	rs4355385	28714469	Langefeld CD	2017-07-17	Nat Commun	Transancestral mapping and genetic load in systemic lupus erythematosus.	Systemic lupus erythematosus	6,748 European ancestry cases, 11,516 European ancestry controls, 2,970 African American cases, 2,452 African American controls, 1,872 Hispanic cases, 2,016 Hispanic controls	NA	4p16.1	CLNK	rs4355385-?	NR	3E-6		1.33	[1.19-1.50]	Illumina [at least 5000000] (imputed)	N
665	chr4	10575258	10575259	rs114145405	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114145405-A	NR	7E-24		0.0528	[0.043-0.063] unit increase	Affymetrix [9000000] (imputed)	N
665	chr4	10582603	10582604	rs75339413	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75339413-A	NR	3E-29		0.1378	[0.11-0.16] unit increase	Affymetrix [9000000] (imputed)	N
665	chr4	10583153	10583154	rs6856210	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs6856210-G	NR	3E-18		0.0306	[0.024-0.037] unit decrease	Affymetrix [9000000] (imputed)	N
665	chr4	10590015	10590016	rs114511252	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114511252-A	NR	6E-10		0.0566	[0.039-0.074] unit increase	Affymetrix [9000000] (imputed)	N
665	chr4	10611108	10611109	rs115056433	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs115056433-T	NR	1E-43		0.1009	[0.087-0.115] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr4	10660363	10660364	rs150164330	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p16.1		rs150164330-T	NR	6E-9		0.059	[0.039-0.079] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
666	chr4	10665320	10665321	rs56040324	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs56040324-G	NR	1E-30		0.1115	[0.092-0.131] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr4	10666908	10666909	rs13144136	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	4p16.1	CLNK	rs13144136-?	0.34	1E-6		1.47	[1.25-1.72]	Affymetrix, Illumina [2530150] (imputed)	N
666	chr4	10666908	10666909	rs13144136	28222112	Dumitrescu L	2017-01-01	PLoS One	Genome-wide study of resistant hypertension identified from electronic health records.	Resistance to antihypertensive treatment in hypertension	1,719 European ancestry resistant cases, 708 European ancestry controlled hypertensives, 1,111 African American, Hispanic and other ancestry resistant cases, 168 African American, Hispanic and other ancestry controlled hypertensives	NA	4p16.1	CLNK	rs13144136-?	0.30	7E-6	EA	1.52	[1.27-1.85]	Affymetrix, Illumina [2530150] (imputed)	N
666	chr4	10671322	10671323	rs6830367	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs6830367-C	NR	4E-48		0.0461	[0.04-0.052] unit increase	Affymetrix [9000000] (imputed)	N
666	chr4	10683050	10683051	rs6827317	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs6827317-A	NR	4E-30		0.1112	[0.092-0.13] unit increase	Affymetrix [9000000] (imputed)	N
666	chr4	10692865	10692866	rs11721691	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p16.1		rs11721691-?	NR	1E-8				NR [~ 8900000] (imputed)	N
666	chr4	10703214	10703215	rs4697649	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs4697649-A	NR	1E-9		0.0379	[0.026-0.05] unit increase	Affymetrix [9000000] (imputed)	N
666	chr4	10704136	10704137	rs13120565	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4p16.1	NR	rs13120565-A	0.33499	7E-10		0.04098382	[0.028-0.054] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
666	chr4	10704136	10704137	rs13120565	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p16.1	NR	rs13120565-A	0.38	6E-44		0.0266	[0.023-0.03] unit increase	NR [NR]	N
666	chr4	10704136	10704137	rs13120565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p16.1	Intergenic	rs13120565-A	0.3778	5E-9	(MTAG)	0.0138	[0.0091-0.0185] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
666	chr4	10704136	10704137	rs13120565	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4p16.1	Intergenic	rs13120565-A	0.3778	6E-10		0.0182	[0.013-0.024] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
666	chr4	10704911	10704912	rs11723349	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p16.1	NR	rs11723349-?	NR	9E-6		4.438	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
666	chr4	10713673	10713674	rs9291444	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4p16.1		rs9291444-T	NR	2E-17		0.0731	[0.056-0.09] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
666	chr4	10713673	10713674	rs9291444	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4p16.1	RP11-61G19.1	rs9291444-T	0.471241	8E-16		0.07350931	[0.056-0.091] unit increase	Affymetrix [7288503] (imputed)	N
666	chr4	10716938	10716939	rs4293777	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	4p16.1	NR	rs4293777-C	0.469	2E-19		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
666	chr4	10716938	10716939	rs4293777	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4p16.1		rs4293777-?	NR	6E-17				NR [~ 8900000] (imputed)	N
666	chr4	10716938	10716939	rs4293777	27992413	Ji SG	2016-12-19	Nat Genet	Genome-wide association study of primary sclerosing cholangitis identifies new risk loci and quantifies the genetic relationship with inflammatory bowel disease.	Primary sclerosing cholangitis	2,871 European ancestry cases, 12,019 European ancestry controls	1,925 European ancestry cases, 7,936 European ancestry controls	4p16.1	Intergenic	rs4293777-C	0.48	3E-7		1.12	[1.07-1.17]	Affymetrix, Illumina [7891602] (imputed)	N
666	chr4	10718222	10718223	rs76800926	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs76800926-T	NR	3E-16		0.0389	[0.029-0.048] unit decrease	Affymetrix [9000000] (imputed)	N
666	chr4	10718845	10718846	rs56817615	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	4p16.1		rs56817615-?	NR	2E-16				NR [~ 8900000] (imputed)	N
666	chr4	10721432	10721433	rs4697651	33536424	Wang YF	2021-02-03	Nat Commun	Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups.	Systemic lupus erythematosus	4,222 Han Chinese ancestry cases, 8,431 Han Chinese ancestry controls, 4,576 European ancestry cases, 8,039 European ancestry controls	NA	4p16.1	CLNK, MIR572	rs4697651-T	NR	6E-8		0.88	[0.83-0.93]	Illumina [NR] (imputed)	N
666	chr4	10726519	10726520	rs13103285	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	4p16.1		rs13103285-T	NR	4E-14		1.1	[1.08-1.13]	NR [13810676] (imputed)	N
666	chr4	10726852	10726853	rs16872571	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4p16.1	intergenic	rs16872571-?	0.519	2E-10			[NR]	Affymetrix, Illumina [152234]	N
666	chr4	10726852	10726853	rs16872571	22561518	Jin Y	2012-05-06	Nat Genet	Genome-wide association analyses identify 13 new susceptibility loci for generalized vitiligo.	Vitiligo	418 European ancestry cases, 2,810 European ancestry controls	1,377 European ancestry cases, 1,284 European ancestry controls	4p16.1	CLNK	rs16872571-C	0.56	2E-8		1.21	[NR]	Illumina [495821]	N
666	chr4	10727356	10727357	rs13142500	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p16.1	CLNK	rs13142500-T	NR	7E-9		0.0932625	[0.062-0.124] unit decrease	Illumina [8380626] (imputed)	N
666	chr4	10727356	10727357	rs13142500	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p16.1	CLNK	rs13142500-T	0.55	2E-6	(EA)	0.0967	[0.057-0.137] unit decrease	Illumina [8380626] (imputed)	N
666	chr4	10727356	10727357	rs13142500	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p16.1	CLNK	rs13142500-C	0.49	3E-9		1.1	[1.07-1.13]	Affymetrix, Illumina [up to 9739303] (imputed)	N
666	chr4	10727356	10727357	rs13142500	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p16.1	CLNK	rs13142500-C	0.45	2E-6	(EA)	1.1	[1.06-1.15]	Affymetrix, Illumina [up to 9739303] (imputed)	N
666	chr4	10727527	10727528	rs13109179	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4p16.1		rs13109179-A	NR	9E-11		0.0647	[0.045-0.084] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
666	chr4	10727696	10727697	rs13116306	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Ease of getting up in the morning	385,949 European ancestry individuals	NA	4p16.1	NR	rs13116306-T	0.42	2E-8		0.0099	[0.0064-0.0134] unit decrease	Affymetrix, Illumina [10862568] (imputed)	N
667	chr4	10764601	10764602	rs76285604	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs76285604-T	NR	7E-32		0.1064	[0.089-0.124] unit decrease	Affymetrix [9000000] (imputed)	N
667	chr4	10794712	10794713	rs77090924	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77090924-T	NR	4E-15		0.0513	[0.039-0.064] unit increase	Affymetrix [9000000] (imputed)	N
667	chr4	10801704	10801705	rs56279048	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs56279048-T	NR	8E-13		0.0394	[0.029-0.05] unit increase	Affymetrix [9000000] (imputed)	N
668	chr4	10916914	10916915	rs12511310	25604533	Renauer PA	2015-01-20	Arthritis Rheumatol	Identification of Susceptibility Loci in IL6, RPS9/LILRB3, and an Intergenic Locus on Chromosome 21q22 in Takayasu Arteritis in a Genome-Wide Association Study.	Takayasu arteritis	516 Turkish ancestry cases, 119 European ancestry cases, 462 Turkish ancestry controls, 993 European ancestry controls	NA	4p16.1	CLNK, LOC643446	rs12511310-?	0.61	8E-6	(Turkish)	1.5625	[1.28-1.89]	Illumina [up to 547389]	N
668	chr4	10932040	10932041	rs77273679	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs77273679-C	NR	3E-10		0.0213	[0.015-0.028] unit increase	Affymetrix [9000000] (imputed)	N
668	chr4	10974886	10974887	rs114158982	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114158982-G	NR	8E-17		0.0769	[0.059-0.095] unit increase	Affymetrix [9000000] (imputed)	N
668	chr4	10987377	10987378	rs114897129	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs114897129-A	NR	6E-10		0.0418	[0.029-0.055] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr4	11014821	11014822	rs4504245	34493870	Wightman DP	2021-09-07	Nat Genet	A genome-wide association study with 1,126,563 individuals identifies new risk loci for Alzheimer's disease.	Late-onset Alzheimer's disease	90,338 cases, 1,036,225 controls	NA	4p16.1		rs4504245-?	NR	5E-12				Illumina [NR] (imputed)	N
669	chr4	11014821	11014822	rs4504245	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p16.1	NR	rs4504245-?	NR	3E-6		0.0080472	[0.0046-0.0114] unit increase	Affymetrix [805426] (imputed)	N
669	chr4	11024681	11024682	rs6448451	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Family history of Alzheimer's disease	47,793 European ancestry cases, 328,320 European ancestry controls	NA	4p16.1	CLNK	rs6448451-G	NR	1E-8		5.702	NR z-score increase	Affymetrix [10847151] (imputed)	N
669	chr4	11026027	11026028	rs6448453	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease or family history of Alzheimer's disease	24,087 European ancestry late-onset Alzheimer's disease cases, 47,793 European ancestry individuals with family history of Alzheimer's disease, 383,378 European ancestry controls	NA	4p16.1	CLNK	rs6448453-A	0.252	2E-9		6.0	NR z-unit increase	Affymetrix, Illumina [up to 10847151] (imputed)	N
669	chr4	11027618	11027619	rs4351014	34099642	de Rojas I	2021-06-07	Nat Commun	Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.	Alzheimer's disease	36,675 European ancestry cases, up to 42,034 European ancestry maternal or paternal cases, up to 372,760 European ancestry controls	19,087 European ancestry cases, 39,101 European ancestry controls	4p16.1	HS3ST1	rs4351014-C	0.719	9E-12		0.94	[0.92-0.95]	Affymetrix, Illumina [up to 14542816] (imputed)	N
669	chr4	11040289	11040290	rs2904297	25429627	Oryoji D	2014-11-27	J Clin Endocrinol Metab	Identification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves' disease.	Hashimoto thyroiditis versus Graves' disease	263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves' disease cases	181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves' disease cases	4p16.1	intergenic	rs2904297-?	0.763	7E-6		1.72	[1.37-2.22]	Illumina [546173]	N
669	chr4	11052927	11052928	rs61795273	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs61795273-A	NR	4E-15		0.0455	[0.034-0.057] unit decrease	Affymetrix [9000000] (imputed)	N
669	chr4	11081217	11081218	rs75351311	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p16.1	NR	rs75351311-G	NR	4E-21		0.0437	[0.035-0.053] unit increase	Affymetrix [9000000] (imputed)	N
669	chr4	11089103	11089104	rs60620535	31659325	Malhotra R	2019-10-28	Nat Genet	HDAC9 is implicated in atherosclerotic aortic calcification and affects vascular smooth muscle cell phenotype.	Thoracic aortic calcification levels	8,422 European ancestry individuals	NA	4p16.1	NR	rs60620535-T	0.063	9E-7		4.92	z score increase	Affymetrix, Illumina [9000000] (imputed)	N
669	chr4	11106350	11106351	rs111855550	30196971	Bray MJ	2018-09-01	Fertil Steril	Transethnic and race-stratified genome-wide association study of fibroid characteristics in African American and European American women.	Uterine fibroid size (maximum dimension)	1,301 African American or European ancestry female individuals	NA	4p16.1	CLNK, MIR572	rs111855550-G	0.13	9E-7		0.08	[0.05-0.11] unit decrease	Affymetrix [up to 9596033] (imputed)	N
669	chr4	11115864	11115865	rs16878196	26174813	Alemany S	2015-07-14	Am J Med Genet B Neuropsychiatr Genet	New suggestive genetic loci and biological pathways for attention function in adult attention-deficit/hyperactivity disorder.	Attention function in attention deficit hyperactive disorder	479 European ancestry adult cases	NA	4p16.1	MIR572	rs16878196-T	0.052	7E-6	(HRTSE)	1.71	[0.97-2.45] unit decrease	Illumina [799713]	N
669	chr4	11139251	11139252	rs141937661	33667223	Lesseur C	2021-03-05	PLoS Genet	Genome-wide association meta-analysis identifies pleiotropic risk loci for aerodigestive squamous cell cancers.	Aerodigestive squamous cell cancer (pleiotropy)	7,426 European ancestry lung squamous cell carcinoma cases, 5,452 European ancestry oral and oropharynx squamous cell carcinoma cases, 693 European ancestry laryngeal squamous cell carcinoma cases, 316 European ancestry esophageal squamous cell carcinoma cases, 61,961 European ancestry controls	NA	4p16.1	NR	rs141937661-A	0.01	1E-6		2.07	[1.78-2.36]	Illumina [8468885] (imputed)	N
670	chr4	11161876	11161877	rs144742743	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p16.1	MIR572	rs144742743-A	0.993	6E-6		0.2056	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
670	chr4	11161876	11161877	rs144742743	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p16.1	MIR572	rs144742743-A	0.993	6E-6		0.2056	[0.12-0.29] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
670	chr4	11187848	11187849	rs77867520	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration in psychotic disorders	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases.	NA	4p16.1	MIR572	rs77867520-?	NR	2E-7	(African)			Illumina [4404269] (imputed)	N
670	chr4	11263912	11263913	rs782760	33012170	Lanfear DE	2020-10-04	Circ Heart Fail	Polygenic Score for Beta-Blocker Survival Benefit in European Ancestry Patients with Reduced Ejection Fraction Heart Failure.	Beta blocker survival benefit in heart failure with reduced ejection fraction (time to all cause mortality x beta blocker interaction)	248 European ancestry individuals		4p16.1	intergenic	rs782760-?		4E-6				Affymetrix [7000000] (imputed)	N
672	chr4	11412323	11412324	rs224461	33106475	Li QS	2020-10-26	Transl Psychiatry	Genome-wide association studies of antidepressant class response and treatment-resistant depression.	Response to norepinephrine-dopamine reuptake inhibitors (responders vs non-responders)	3,971 European ancestry responders, 3,512 European ancestry non-responders	NA	4p15.33	NR	rs224461-T	NR	9E-6		0.8226	NR	Illumina [at least 560000] (imputed)	N
672	chr4	11469729	11469730	rs4916646	26242244	Ma Y	2015-08-05	Sci Rep	Association of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.	Exploratory eye movement dysfunction in schizophrenia (cognitive search score)	128 Han Chinese ancestry cases	NA	4p15.33	HS3ST1	rs4916646-?	NR	3E-7		2.125	[1.36-2.89] unit decrease	Illumina [498648]	N
672	chr4	11503603	11503604	rs1390096	22719876	Kawaguchi T	2012-06-14	PLoS One	Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.	Nonalcoholic fatty liver disease	529 Japanese ancestry cases, 932 Japanese ancestry controls	NA	4p15.33	HS3ST1	rs1390096-A	0.372	3E-6		1.44	[1.24-1.68]	Illumina [484751]	N
672	chr4	11504490	11504491	rs10000518	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	4p15.33	HS3ST1	rs10000518-G	NR	6E-6		2.0833335	[2.08-2.08]	Illumina [up to 294091]	N
673	chr4	11546479	11546480	rs191641281	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interferon gamma-induced protein 10 levels	3,685 Finnish ancestry individuals	NA	4p15.33	NR	rs191641281-G		3E-6		0.8337	[0.49-1.18] SD units decrease	NR [10700000] (imputed)	N
673	chr4	11563630	11563631	rs183547317	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	4p15.33	HS3ST1	rs183547317-T	NR	1E-6		24.2758	[14.58-33.97] unit increase	Illumina [6097251] (imputed)	N
673	chr4	11604895	11604896	rs12504231	30591961	Huang L	2018-12-24	Sci China Life Sci	Genome-wide analysis identified 17 new loci influencing intraocular pressure in Chinese population.	Intraocular pressure	5,571 Chinese ancestry individuals	2,981 Chinese ancestry individuals	4p15.33	HS3ST1, LOC101929019	rs12504231-C	0.23	6E-19		8.89	NR z score increase	Illumina [at least 900015] (imputed)	N
673	chr4	11613319	11613320	rs11728863	27126917	Spada J	2016-04-29	J Sleep Res	Genome-wide association analysis of actigraphic sleep phenotypes in the LIFE Adult Study.	Daytime sleep phenotypes	874 European ancestry individuals	NA	4p15.33	HS3ST1, RNA5SP156, RNPS1P1, MIR572	rs11728863-A	NR	4E-6	(daytime resting duration)	0.09319	[0.054-0.133] unit increase	Affymetrix [7141204] (imputed)	N
673	chr4	11614606	11614607	rs28545802	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	4p15.33	NR	rs28545802-?		1E-6		2.01	[1.51-2.66]	Illumina [539473] (imputed)	N
673	chr4	11616115	11616116	rs6448797	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.33	MIST	rs6448797-?	NR	8E-6	(isocitrate)	0.17551677	[0.099-0.252] unit decrease	Affymetrix [at least 2500000] (imputed)	N
673	chr4	11618713	11618714	rs7654819	28498854	Liang J	2017-05-12	PLoS Genet	Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations.	Blood pressure traits (multi-trait analysis)	Up to 31,155 African individuals	Up to 4,187 African individuals, up to 14,016 Korean ancestry individuals, up to 23,914 European ancestry individuals, up to 12,278 Hispanic individuals	4p15.33	NR	rs7654819-?	NR	7E-6	(Het)			Affymetrix, Illumina [at least 30072738] (imputed)	N
673	chr4	11630048	11630049	rs6448799	24162737	Lambert JC	2013-10-27	Nat Genet	Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.	Alzheimer's disease (late onset)	17,008 European ancestry cases, 37,154 European ancestry controls	8,572 European ancestry cases, 11,312 European ancestry controls	4p15.33	HS3ST1	rs6448799-T	0.3	7E-8		1.08	[1.05-1.11]	Illumina [7055881] (imputed)	N
674	chr4	11674660	11674661	rs7671189	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	intergenic	rs7671189-A	0.375	3E-6	(Folate )	0.03	[NR] nmol/L increase	Illumina [899892]	N
674	chr4	11723234	11723235	rs7657553	30617256	Jansen IE	2019-01-07	Nat Genet	Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.	Alzheimer's disease (late onset)	24,087 European ancestry cases, 55,058 European ancestry controls	NA	4p15.33	HS3ST1	rs7657553-A	NR	2E-8		5.5982833	NR z-score increase	Illumina [up to 9862738] (imputed)	N
674	chr4	11730450	11730451	rs75986423	30801121	O'Donnell S	2019-02-25	Inflamm Bowel Dis	The Unsolved Link of Genetic Markers and Crohn's Disease Progression: A North American Cohort Experience.	Crohn's disease (indolent vs progressive)	562 European ancestry individuals with indolent disease, 701 European ancestry individuals with progressive disease	NA	4p15.33	NR	rs75986423-C	0.108761	6E-6				Illumina [5378266] (imputed)	N
674	chr4	11760885	11760886	rs1388865	32653958	Cho HW	2020-07-11	J Bone Miner Metab	Association between non-Caucasian-specific ASCC1 gene polymorphism and osteoporosis and obesity in Korean postmenopausal women.	Body mass index	3,013 Korean ancestry individuals	NA	4p15.33	NR	rs1388865-C	NR	5E-6		0.3448	[0.2-0.49] unit increase	Affymetrix [NR]	N
675	chr4	11844858	11844859	rs62295581	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed, missing and filled teeth)	109 African American adults	NA	4p15.33	NR	rs62295581-?		2E-6		6.403	[4.1-8.7] unit increase	Illumina [~ 4900000] (imputed)	N
675	chr4	11848134	11848135	rs16886287	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.33	NR	rs16886287-?	NR	4E-8				Affymetrix [NR]	N
675	chr4	11855862	11855863	rs35523062	28662289	Lin YY	2017-06-29	Cancer	Genome-wide association analysis identifies a GLUL haplotype for familial hepatitis B virus-related hepatocellular carcinoma.	Familial hepatitis B virus-related hepatocellular carcinoma	139 East Asian ancestry cases, 139 East Asian ancestry controls	NA	4p15.33	MIR572	rs35523062-C	0.8297	7E-6		3.85	[2.08-7.14]	Affymetrix [641398]	N
676	chr4	12026866	12026867	rs113991851	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4p15.33	NR	rs113991851-?	NR	1E-7	(Latino)	1.3931	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
677	chr4	12080929	12080930	rs9991510	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	4p15.33	HS3ST1	rs9991510-?	NR	2E-41		1.15	[1.127-1.174]	Illumina [13729857] (imputed)	N
677	chr4	12086762	12086763	rs140734723	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.33	NR	rs140734723-G	0.03484	3E-9	(AKR1B10)	1.29	NR unit increase	Illumina [1671387] (imputed)	N
677	chr4	12099334	12099335	rs1479279	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4p15.33	LOC644753, HSP90AB2P	rs1479279-G	0.016	2E-6		5.0	[2.42-10.33]	Illumina [1556551]	N
677	chr4	12111548	12111549	rs187075894	23319000	Luykx JJ	2013-01-15	Mol Psychiatry	Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.	Metabolite levels (MHPG)	up to 398 European ancestry individuals	NA	4p15.33	intergenic	rs187075894-C		8E-7		0.3145	unit increase	Illumina [5767231] (imputed)	N
677	chr4	12124569	12124570	rs6448862	30899065	Wang M	2019-03-21	Sci Rep	A genome-wide association study on photic sneeze reflex in the Chinese population.	Photic sneeze reflex	874 Chinese ancestry cases, 2,543 Chinese ancestry controls	NA	4p15.33	HS3ST1, RAB28	rs6448862-?	NR	2E-8				Affymetrix [419093]	N
677	chr4	12169227	12169228	rs17331304	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Positive affect	180,281 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4p15.33	NR	rs17331304-T	0.8281	4E-6		0.0211	[0.012-0.03] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
677	chr4	12172668	12172669	rs6858365	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4p15.33	LOC644753, HSP90AB2P	rs6858365-A	0.015	9E-7		5.21	[2.51-10.82]	Illumina [1556551]	N
678	chr4	12317473	12317474	rs4834978	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.33		rs4834978-T	0.506	4E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
679	chr4	12352521	12352522	rs111858442	29520036	Stein MB	2018-03-08	Mol Psychiatry	Genome-wide analysis of insomnia disorder.	Insomnia	2,297 European American cases, 334 African American cases, 606 Latino American cases, 9,176 European American controls, 2,345 African American controls, 2,893 Latino American controls	NA	4p15.33	Intergenic	rs111858442-G	NR	4E-7		2.2727273		Illumina [at least 360704] (imputed)	N
680	chr4	12498886	12498887	rs7665957	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	HSP90AB2P	rs7665957-A	0.0060	5E-7	(Sleep duration )	0.01	[NR] min/d increase	Illumina [899892]	N
680	chr4	12500220	12500221	rs62295889	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	RAB28	rs62295889-G	0.026	6E-6	(Urinary free epinephrine )	0.03	[NR] nmol/d increase	Illumina [899892]	N
680	chr4	12579845	12579846	rs10002492	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p15.33	NR	rs10002492-G	0.167227182224207	8E-6	(IGP23)	0.1837	[0.1-0.26] unit decrease	Illumina [~ 2500000] (imputed)	N
681	chr4	12683699	12683700	rs148929991	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Trunk fat mass	3,399 whole genome sequenced individuals, 12,838 European ancestry individuals	10,667 European ancestry individuals	4p15.33	ECM1P2	rs148929991-A	0.9964	3E-6		0.796	[0.46-1.13] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
681	chr4	12706072	12706073	rs71607666	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.33		rs71607666-?	NR	7E-16				NR [~ 8900000] (imputed)	N
682	chr4	12769231	12769232	rs11945798	23738518	Luciano M	2013-06-05	Genes Brain Behav	A genome-wide association study for reading and language abilities in two population cohorts.	Word reading	6,649 European ancestry children and adolescents		4p15.33	intergenic	rs11945798-T	0.96	5E-6		0.175	[0.1-0.25] unit decrease	Illumina [~ 2400000] (imputed)	N
682	chr4	12773993	12773994	rs16887552	24009623	Jiang J	2013-08-30	Front Genet	Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.	Response to mTOR inhibitor (everolimus)	87 European ancestry individuals, 91 African American individuals, 94 Han Chinese ancestry individuals	NA	4p15.33	intergenic	rs16887552-?	NR	8E-6		0.24	[NR] unit decrease	Affymetrix, Illumina [1348798]	N
682	chr4	12791281	12791282	rs1402037	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.33	NKX3-2	rs1402037-?	NR	8E-6	(TAG 52:2)	0.15348397	[0.086-0.221] unit decrease	Affymetrix [at least 2500000] (imputed)	N
682	chr4	12809216	12809217	rs112041531	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.33		rs112041531-?	NR	5E-14				NR [~ 8900000] (imputed)	N
682	chr4	12840918	12840919	rs187886989	32939015	Zhu Z	2020-09-16	J Hum Genet	A genome-wide association study reveals a substantial genetic basis underlying the Ebbinghaus illusion.	Ebbinghaus illusion (underestimation)	1,986 Chinese ancestry individuals	839 Chinese ancestry individuals	4p15.33	NR	rs187886989-?	NR	7E-9		5.784	NR z score decrease	Illumina [at least 830937] (imputed)	N
683	chr4	12878851	12878852	rs138213957	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, hurdle binary method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p15.33	intergenic	rs138213957-C	0.0135641627341584	9E-6	(O_Lactobacillales_HB)	1.2868	[0.72-1.86] unit decrease	Illumina [7711310] (imputed)	N
683	chr4	12886271	12886272	rs12642791	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.33	NKX3-2	rs12642791-?	NR	1E-6	(3-hydroxyanthranilic acid)	0.23718525	[0.14-0.33] unit decrease	Affymetrix [at least 2500000] (imputed)	N
683	chr4	12892995	12892996	rs7677078	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p15.33		rs7677078-G	0.47778	2E-8		0.0114317	[0.0075-0.0154] unit decrease	Illumina [13479295] (imputed)	N
683	chr4	12892995	12892996	rs7677078	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p15.33	LOC101929019, RAB28	rs7677078-?	NR	2E-10		0.018225458	[0.013-0.024] unit decrease	Illumina [27896057] (imputed)	N
683	chr4	12900116	12900117	rs114526602	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.33	NR	rs114526602-?	NR	1E-9				Affymetrix [~ 8270000] (imputed)	N
683	chr4	12901362	12901363	rs58066158	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.33	NR	rs58066158-?	NR	8E-9		0.12966	[0.086-0.174] unit increase	Affymetrix [7794483] (imputed)	N
683	chr4	12901362	12901363	rs58066158	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.33	NR	rs58066158-?	NR	1E-6	(male)	0.17351	[0.1-0.24] unit increase	Affymetrix [7794483] (imputed)	N
683	chr4	12901752	12901753	rs223929	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p15.33	intergenic	rs223929-A	0.7179	2E-20		0.0195	[0.015-0.024] unit increase	Affymetrix [18391927] (imputed)	N
683	chr4	12921101	12921102	rs10489032	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p15.33		rs10489032-?	NR	3E-8				NR [~ 8900000] (imputed)	N
683	chr4	12933832	12933833	rs16887871	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Skin reflectance (Melanin index)	720 South Asian ancestry individuals		4p15.33	NR	rs16887871-T	NR	6E-6		0.301555	[0.17-0.43] unit increase	Affymetrix, Illumina [at least 398118] (imputed)	N
683	chr4	12955258	12955259	rs7692161	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p15.33		rs7692161-G	NR	2E-36		0.0163	[0.014-0.019] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
683	chr4	12955258	12955259	rs7692161	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.33	NR	rs7692161-?	NR	3E-8				Affymetrix [~ 8270000] (imputed)	N
683	chr4	12955258	12955259	rs7692161	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.33		rs7692161-?	NR	1E-59				NR [~ 8900000] (imputed)	N
683	chr4	12963573	12963574	rs763318	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4p15.33	RAB28	rs763318-A	0.468	8E-13		0.021	[0.015-0.027] unit decrease	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
684	chr4	13020909	13020910	rs138847726	34854908	Veluchamy A	2021-12-01	JAMA Netw Open	Association of Genetic Variant at Chromosome 12q23.1 With Neuropathic Pain Susceptibility.	Neuropathic pain	4,512 European ancestry cases, 428,489 European ancestry controls	NA	4p15.33		rs138847726-C	0.964	5E-6		1.207	[1.115-1.307]	Affymetrix, Illumina [NR] (imputed)	N
684	chr4	13039439	13039440	rs1913707	34450027	Boer CG	2021-08-24	Cell	Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations.	Osteoarthritis (with total hip replacement)	23,021 European ancestry cases, 296,016 European ancestry controls	NA	4p15.33		rs1913707-A	0.6045	1E-13		1.0861073	[1.06273354-1.109995099]	Affymetrix, Illumina [NR] (imputed)	N
684	chr4	13039439	13039440	rs1913707	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis (hip)	15,704 European ancestry cases, 378,169 European ancestry controls	NA	4p15.33	NR	rs1913707-A	0.61	3E-11		1.08	[1.06-1.11]	Affymetrix, Illumina [up to 17000000] (imputed)	N
684	chr4	13039439	13039440	rs1913707	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	4p15.33	NR	rs1913707-A	0.61	3E-10		1.04	[1.02-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
684	chr4	13042928	13042929	rs564998468	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4p15.33		rs564998468-T	NR	4E-9		0.1551	[0.1-0.21] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
684	chr4	13060674	13060675	rs35065779	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels	18,590 European ancestry individuals	NA	4p15.33		rs35065779-?	NR	6E-6		0.08	[0.043-0.117] unit increase	Affymetrix, Illumina [NR] (imputed)	N
684	chr4	13063178	13063179	rs71609106	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin T levels (MTAG)	18,590 European ancestry individuals	NA	4p15.33		rs71609106-?	NR	6E-6		4.53	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
684	chr4	13063178	13063179	rs71609106	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration (MTAG)	12,730 European ancestry individuals	NA	4p15.33		rs71609106-?	NR	6E-6		4.51	Z score decrease	Affymetrix, Illumina [NR] (imputed)	N
684	chr4	13098881	13098882	rs512244	30891314	Saad MN	2019-01-18	J Adv Res	Studying the effects of haplotype partitioning methods on the RA-associated genomic results from the North American Rheumatoid Arthritis Consortium (NARAC) dataset.	Rheumatoid arthritis	868 European ancestry cases, 1,194 European ancestry controls	NA	4p15.33	HS3ST1, HSP90AB2P	rs512244-G	0.125	4E-9				NR [509413]	N
684	chr4	13101038	13101039	rs537805278	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD11c+ HLA DR++ monocyte Absolute Count	3,019 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.33		rs537805278-A	0.00581	1E-8		1.06	[0.7-1.42] unit decrease	Illumina [18122507] (imputed)	N
684	chr4	13102350	13102351	rs13122273	22228203	Aslibekyan S	2012-01-05	Pharmacogenet Genomics	A genome-wide association study of inflammatory biomarker changes in response to fenofibrate treatment in the Genetics of Lipid Lowering Drug and Diet Network.	Inflammatory biomarkers	1,092 European ancestry individuals	NA	4p15.33	intergenic	rs13122273-?	NR	9E-7	(C-reactive protein)			Affymetrix [2543887] (imputed)	N
685	chr4	13116761	13116762	rs491376	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	4p15.33	intergenic	rs491376-C	0.01	2E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
685	chr4	13122534	13122535	rs573332	22041458	Clark SL	2011-11-01	Psychol Med	Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D.	Response to anti-depressant treatment in major depressive disorder	1,151 European ancestry cases, 288 African American cases	NA	4p15.33	intergenic	rs573332-G	0.11	1E-6	(Citalopram+Buspirone, Dizziness)			Affymetrix [421789]	N
685	chr4	13126997	13126998	rs61796131	34260948	Cipriani V	2021-07-12	Am J Hum Genet	Beyond factor H: The impact of genetic-risk variants for age-related macular degeneration on circulating factor-H-like 1 and factor-H-related protein concentrations.	Complement factor H-related protein 1 levels	252 European ancestry individuals	NA	4p15.33		rs61796131-G	NR	5E-6		11.799	[6.87-16.73] unit decrease	Illumina [NR] (imputed)	N
685	chr4	13140592	13140593	rs60440889	32438682	Mateos MK	2020-05-19	Cancers (Basel)	Genome-Wide Association Meta-Analysis of Single-Nucleotide Polymorphisms and Symptomatic Venous Thromboembolism during Therapy for Acute Lymphoblastic Leukemia and Lymphoma in Caucasian Children.	Childhood ALL/LBL (acute lymphoblastic leukemia/lymphoblastic lymphoma) treatment-related venous thromboembolism	92 European ancestry cases, 1,481 European ancestry controls	NA	4p15.33	NR	rs60440889-?		2E-6		3.55	[2.11-5.96]	Illumina [NR] (imputed)	N
685	chr4	13174057	13174058	rs16888295	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.33	RNU6-962P	rs16888295-C	NR	2E-10		0.0187457	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
685	chr4	13185881	13185882	rs1472721	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p15.33	NR	rs1472721-?	NR	1E-8				Affymetrix [~ 8270000] (imputed)	N
685	chr4	13185881	13185882	rs1472721	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.33	NR	rs1472721-?	NR	3E-17				Affymetrix [~ 8270000] (imputed)	N
685	chr4	13185881	13185882	rs1472721	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p15.33		rs1472721-?	NR	2E-8				NR [~ 8900000] (imputed)	N
685	chr4	13196063	13196064	rs4289459	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4p15.33	HSP90AB2P	rs4289459-A	NR	9E-9		0.019818	[0.013-0.027] unit increase	Affymetrix [321114] (imputed)	N
685	chr4	13208802	13208803	rs28446722	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p15.33		rs28446722-?	NR	2E-10				NR [~ 8900000] (imputed)	N
685	chr4	13221746	13221747	rs6843953	30833571	Wiberg A	2019-03-04	Nat Commun	A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.	Carpal tunnel syndrome	12,312 European ancestry cases, 389,344 European ancestry controls	NA	4p15.33	Intergenic	rs6843953-T	0.138	6E-12		1.14	[1.10-1.18]	Affymetrix [84000000] (imputed)	N
685	chr4	13237844	13237845	rs56283745	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p15.33	RAB28	rs56283745-G	0.792074	3E-9		0.0134385	[0.009-0.0179] unit decrease	NR [13737936] (imputed)	N
686	chr4	13242796	13242797	rs733048	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	4p15.33	RAB28, BOD1L, NKX3-2, HSP90AB2P	rs733048-?	0.22	4E-6	(PD2)	1.95	[NR]	Illumina [~ 1400000] (imputed)	N
686	chr4	13242796	13242797	rs733048	24347629	Shaffer JR	2013-12-17	G3 (Bethesda)	Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.	Periodontal disease-related phenotype (Socransky)	93 European ancestry cases, 83 European ancestry individuals, 497 European ancestry controls	NA	4p15.33	RAB28, BOD1L, NKX3-2, HSP90AB2P	rs733048-?	0.22	1E-6	(PD1)	2.4	[NR]	Illumina [~ 1400000] (imputed)	N
686	chr4	13252147	13252148	rs6857769	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.33	HSP90AB2P	rs6857769-C	NR	3E-8		0.0235471	[0.015-0.032] unit increase	Affymetrix [321114] (imputed)	N
686	chr4	13253575	13253576	rs11935978	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.33		rs11935978-?	NR	2E-8				NR [~ 8900000] (imputed)	N
686	chr4	13264140	13264141	rs16888428	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.33		rs16888428-?	NR	1E-33				NR [~ 8900000] (imputed)	N
686	chr4	13266247	13266248	rs4834946	31251335	Turpin W	2019-10-01	Inflamm Bowel Dis	Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn's Disease.	Intestinal permeability measurement	1,075 European ancestry first-degree relatives of Crohn's disease patients	NA		RAB28	rs4834946-C	0.1	2E-6		0.17	[0.11-0.23] unit decrease	Illumina [3700000] (imputed)	N
686	chr4	13305220	13305221	rs11734843	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 21, depth of nasal alae)	2,187 European ancestry individuals	NA	4p15.33	NR	rs11734843-C	0.01238	4E-6		0.6371	[0.37-0.91] unit increase	Illumina [10677593] (imputed)	N
687	chr4	13463415	13463416	rs200653222	31708768	Liu C	2019-10-25	Front Aging Neurosci	Genome-Wide Association Studies for Cerebrospinal Fluid Soluble TREM2 in Alzheimer's Disease.	Cerebrospinal fluid sTREM-2 levels	224 healthy normal individuals, 72 significant memory concern individuals, 234 early mild cognitive impairment individuals, 277 late mild cognitive impairment individuals, 194 Alzheimer's disease cases	NA	4p15.33	NR	rs200653222-?	NR	5E-6		6086.037	NR unit decrease	Illumina [2379855]	N
688	chr4	13529989	13529990	rs59341143	30320955	Baird DA	2018-10-15	J Bone Miner Res	Identification of novel loci associated with hip shape: a meta-analysis of genome-wide association studies.	Hip shape (DXA scan)	10,217 European ancestry individuals, 5,717 individuals	NA	4p15.33	Intergenic	rs59341143-C	0.15	7E-10	(hip shape mode 1)	0.098	[0.067-0.129] unit increase	Illumina [7191926] (imputed)	N
688	chr4	13537667	13537668	rs16888802	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.33	LINC01097	rs16888802-T	0.8213	5E-7		0.0433	[0.026-0.06] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
688	chr4	13538955	13538956	rs10939485	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.33		rs10939485-?	NR	1E-21				NR [~ 8900000] (imputed)	N
688	chr4	13571900	13571901	rs7661090	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Age at menopause	approximately 143,000 European ancestry individuals	NA	4p15.33		rs7661090-?	NR	4E-8				NR [~ 8900000] (imputed)	N
688	chr4	13609128	13609129	rs185229225	27047539	Fridley BL	2016-03-22	Front Genet	Genome-Wide Study of Response to Platinum, Taxane, and Combination Therapy in Ovarian Cancer: In vitro Phenotypes, Inherited Variation, and Disease Recurrence.	Response to paclitaxel in ovarian cancer (MTT IC50)	74 lymphoblastoid cell lines	NA	4p15.33	BOD1L1	rs185229225-?	NR	2E-7				Illumina [6243550] (imputed)	N
689	chr4	13648695	13648696	rs1491257	32902719	Hebbar P	2020-09-09	Hum Genet	Genome-wide landscape establishes novel association signals for metabolic traits in the Arab population.	Glycated hemoglobin levels	2,732 Kuwaiti ancestry individuals	NA	4p15.33	LOC100288683, RPL32P12	rs1491257-?	NR	8E-7		4.926	NR unit decrease	Illumina [up to 1520000] (imputed)	N
690	chr4	13768666	13768667	rs73233286	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 22)	2,187 European ancestry individuals	NA	4p15.33	NR	rs73233286-C	0.04998	5E-6		0.316	[0.22-0.42] unit decrease	Illumina [10677593] (imputed)	N
690	chr4	13794415	13794416	rs10489087	17903294	Yang Q	2007-09-19	BMC Med Genet	Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study.	Hemostatic factors and hematological phenotypes	Up to 1,062 European ancestry individuals	NA	4p15.33	intergenic	rs10489087-?	0.13	5E-6	(RBCC)			Affymetrix [70897]	N
691	chr4	13914372	13914373	rs10805321	21990027	Drago A	2011-10-11	Am J Med Genet B Neuropsychiatr Genet	The genetics of antipsychotic induced tremors: a genome-wide pathway analysis on the STEP-BD SCP sample.	Response to antipsychotic therapy (extrapyramidal side effects)	409 European and other ancestry bipolar cases	NA	4p15.33	NR	rs10805321-?	NR	9E-6		0.3944	[NR] unit increase	Affymetrix [NR]	N
691	chr4	13948975	13948976	rs74654257	30895295	Jonnalagadda M	2019-03-21	Genome Biol Evol	A genome-wide association study of skin and iris pigmentation among individuals of South Asian ancestry.	Iris heterochromicity	329 South Asian ancestry individuals		4p15.33	intergenic	rs74654257-G	0.096	2E-6		0.682	[0.4-0.96] unit decrease	Illumina [640625] (imputed)	N
691	chr4	13961000	13961001	rs73237428	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4p15.33	LINC01182	rs73237428-T	0.0082	6E-6		0.3106	[0.18-0.44] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
691	chr4	13966850	13966851	rs524675	22959728	Ahmeti KB	2012-09-05	Neurobiol Aging	Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.	Amyotrophic lateral sclerosis in C9orf72 mutation negative individuals	Up to 4,243 European ancestry cases, up to 5,112 European ancestry controls	NA	4p15.33	BOD1L	rs524675-?	NR	2E-6		1.4492754	[1.25-1.69]	Illumina [254145]	N
692	chr4	14101272	14101273	rs3843430	34356046	Oluwafemi OO	2021-07-01	Genes (Basel)	Genome-Wide Association Studies of Conotruncal Heart Defects with Normally Related Great Vessels in the United States.	Conotruncal heart defects with normally related great vessels	294 European ancestry cases, 2,976 European ancestry controls, 913 cases, 559 controls, 641 trios	NA	4p15.33		rs3843430-?	NR	1E-6				Affymetrix, Illumina [3311160] (imputed)	N
692	chr4	14122931	14122932	rs73239453	34607834	Dawed AY	2021-10-04	Diabetes Care	Genome-Wide Meta-analysis Identifies Genetic Variants Associated With Glycemic Response to Sulfonylureas.	Reduction in HbA1c levels in response to sulfonylureas treatment in type 2 diabetes	5,485 European ancestry individuals	NA	4p15.33		rs73239453-T	0.106	9E-6		0.160255	[0.09-0.231] unit increase	Affymetrix, Illumina [538635] (imputed)	N
692	chr4	14126742	14126743	rs150450027	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p15.33	LOC152742	rs150450027-T	1.0	2E-7	(AA)	0.424	unit increase	Illumina [NR] (imputed)	N
692	chr4	14126742	14126743	rs150450027	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p15.33	LOC152742	rs150450027-T	1.0	3E-7	(AA)	2.105	NR unit increase	Illumina [NR] (imputed)	N
692	chr4	14143364	14143365	rs2912200	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.33	NKX3-2	rs2912200-?	NR	3E-6	(gamma aminoisobutyric acid)	0.20186603	[0.12-0.29] unit increase	Affymetrix [at least 2500000] (imputed)	N
692	chr4	14144207	14144208	rs6844339	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.33	LOC152742	rs6844339-G	0.328	6E-6	(RANTES )	0.03	[NR] pg/mL increase	Illumina [899892]	N
693	chr4	14173876	14173877	rs200114742	30898391	Lawrenson K	2019-03-19	Gynecol Oncol	Genome-wide association studies identify susceptibility loci for epithelial ovarian cancer in east Asian women.	Epithelial ovarian cancer	3,238 East Asian ancestry cases, 4,083 East Asian ancestry controls	NA	4p15.33		rs200114742-?	NR	8E-6	(serous_hg)	1.25		Illumina [11595112] (imputed)	N
693	chr4	14266678	14266679	rs149797950	27089181	Okbay A	2016-04-18	Nat Genet	Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses.	Subjective well-being	298,420 Korculan (founder/genetic isolate), Split (founder/genetic isolate), Vis (founder/genetic isolate), Erasmus Rucphen (founder/genetic isolate) and other European ancestry individuals	NA	4p15.33	NR	rs149797950-A	0.9575	2E-6		0.03989604	[0.024-0.056] unit increase	Affymetrix, Illumina, Perlegen [at least 5170349] (imputed)	N
694	chr4	14296299	14296300	rs1426107	30738427	Penney ME	2019-02-09	BMC Cancer	A genome-wide association study identifies single nucleotide polymorphisms associated with time-to-metastasis in colorectal cancer.	Metastasis in stage I-III microsatellite instability low/stable colorectal cancer (time to event)	379 European ancestry cases	NA	4p15.33	NR	rs1426107-A	NR	4E-8	(Cox proportional hazards regression model)	28.08	[8.53-92.45]	Illumina [810622]	N
694	chr4	14300500	14300501	rs73223499	26635082	Soler Artigas M	2015-12-04	Nat Commun	Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation.	Lung function (FEV1/FVC)	38,199 European ancestry adults	54,550 European ancestry adults, 5,062 children	4p15.33	LINC01085, CPEB2-AS1	rs73223499-C	NR	1E-6	(adults)	0.055	[0.033-0.077] unit decrease	Affymetrix, Illumina [8694268] (imputed)	N
694	chr4	14307920	14307921	rs12501605	32517579	Armstrong NJ	2020-06-10	Stroke	Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities.	Periventricular white matter hyperintensities	16,832 European ancestry individuals, 736 African American individuals, 658 Hispanic individuals	8,428 European and unknown ancestry individuals	4p15.33	RP11-669M16.1	rs12501605-A	0.8856	8E-7		0.0463	[0.028-0.065] unit increase	Affymetrix, Illumina [NR] (imputed)	N
694	chr4	14312033	14312034	rs4698250	28476931	Piaggi P	2017-05-05	Diabetes	A Genome-Wide Association Study Using a Custom Genotyping Array Identifies Variants in GPR158 Associated With Reduced Energy Expenditure in American Indians.	Resting metabolic rate	509 Pima Indian ancestry individuals	NA	4p15.33	LINC01085, CPEB2-AS1	rs4698250-T	0.73	8E-7		69.0865	[41.6-96.57] kcal/day decrease	Affymetrix [491265]	N
694	chr4	14324622	14324623	rs10805326	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Intestinibacter id.11345)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p15.33		rs10805326-G	NR	4E-8		5.5121164	z score increase	Affymetrix, Illumina [NR] (imputed)	N
694	chr4	14349699	14349700	rs7660268	29885931	Langefeld CD	2018-06-06	Kidney Int	Genome-wide association studies suggest that APOL1-environment interactions more likely trigger kidney disease in African Americans with nondiabetic nephropathy than strong APOL1-second gene interactions.	End stage renal disease x APOL1 genotype interaction	1,749 African American ESRD cases, 901 African American lupus nephritis-ESRD cases	NA	4p15.33	LINC01085	rs7660268-?		2E-7		1.63	[1.32-2.00]	Illumina [NR]	N
694	chr4	14354554	14354555	rs11945612	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	Spatial processing	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4p15.33	intergenic	rs11945612-T	NR	5E-7		0.1406734	[0.088-0.193] unit increase	Illumina [> 6200000] (imputed)	N
695	chr4	14431386	14431387	rs16890431	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4p15.33	NR	rs16890431-?	NR	7E-7	(EA)	10.29	[9.07-11.51]	Illumina [905956]	N
695	chr4	14438809	14438810	rs35333254	24939585	Fransen E	2014-06-18	Eur J Hum Genet	Genome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.	Age-related hearing impairment	1,489 European ancestry individuals	NA	4p15.33	intergenic	rs35333254-?		5E-6	(PC3)	0.0652	[NR] unit increase	Illumina [4167292] (imputed)	N
695	chr4	14517555	14517556	rs16890599	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.33	C1QTNF7	rs16890599-?	NR	9E-6	(DAG 36:2)	0.6840728	[0.38-0.99] unit decrease	Affymetrix [at least 2500000] (imputed)	N
695	chr4	14545378	14545379	rs56256315	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		LINC00504	rs56256315-?	NR	1E-9		0.884304	[NR] unit decrease	Affymetrix [NR] (imputed)	N
696	chr4	14643953	14643954	rs77823339	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.33	NR	rs77823339-G	0.05401	2E-8	(RPS23)	0.01247	NR unit increase	Illumina [1671387] (imputed)	N
697	chr4	14684422	14684423	rs9992900	34353775	Galesloot TE	2021-08-02	Eur Urol Oncol	Genome-wide Meta-analysis Identifies Novel Genes Associated with Recurrence and Progression in Non-muscle-invasive Bladder Cancer.	Recurrence-free survival in non-muscle-invasive bladder cancer	3,400 European ancestry individuals	NA	4p15.33		rs9992900-A	NR	3E-6		1.3	[1.17-1.46]	Illumina [7591411] (imputed)	N
697	chr4	14776693	14776694	rs28479566	28300201	Hernandez-Pacheco N	2017-03-16	Sci Rep	Identification of a novel locus associated with skin colour in African-admixed populations.	Skin pigmentation	285 Puerto Rican individuals	373 African American individuals	4p15.33	NR	rs28479566-T	NR	8E-6	(Hispanic)	6.35	[9.09-3.61] unit decrease	Affymetrix [14000000] (imputed)	N
698	chr4	14864421	14864422	rs6848922	33713409	Chenoweth MJ	2021-03-13	Nicotine Tob Res	A genome-wide association study of nausea incidence in varenicline-treated cigarette smokers.	Nausea incidence in varenicline-treated smokers	57 European ancestry cases, 132 European ancestry controls	NA	4p15.33		rs6848922-C	NR	7E-6		2.23	[1.43-3.49]	Illumina [NR] (imputed)	N
698	chr4	14879944	14879945	rs10032729	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4p15.33		rs10032729-A	NR	2E-8		0.0115	[0.0076-0.0154] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
698	chr4	14879944	14879945	rs10032729	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p15.33		rs10032729-?	NR	6E-11				NR [~ 8900000] (imputed)	N
698	chr4	14887485	14887486	rs181042383	32841424	Herrera-Luis E	2020-08-25	Pediatr Allergy Immunol	Genome-wide association study reveals a novel locus for asthma with severe exacerbations in diverse populations.	Asthma with severe exacerbations	1,283 Latino cases, 2,027 Latino controls	448 African American cases, 595 African American controls	4p15.33	NR	rs181042383-A	0.04	1E-6	(Latino)	1.95	[1.49-2.56]	Affymetrix [9737707] (imputed)	N
698	chr4	14914977	14914978	rs10021661	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean platelet volume	460,935 European ancestry individuals	NA	4p15.33	NR	rs10021661-A	0.493368	1E-10		0.012467	[0.0087-0.0162] SD unit decrease	Affymetrix, Illumina [49660172] (imputed)	N
698	chr4	14916510	14916511	rs28619302	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean platelet volume	408,112 British individuals	NA	4p15.33	CPEB2-AS1	rs28619302-T	0.496881	1E-10		0.01473467	[0.01-0.019] unit increase	Affymetrix [93095623] (imputed)	N
698	chr4	14918967	14918968	rs17381785	25811787	Huffman JE	2015-03-26	PLoS One	Modulation of genetic associations with serum urate levels by body-mass-index in humans.	Urate levels in overweight individuals	up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals	NA	4p15.33	CPEB2_AS1	rs17381785-C	0.31	8E-6		0.054	[0.030-0.078] kg/m2 decrease	Affymetrix, Illumina [at least 188473] (imputed)	N
699	chr4	14956654	14956655	rs7658942	30134085	Zhang H	2018-07-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive flexibility assessed by the Wisconsin Card Sorting Test.	Cognitive flexibility	2,589 African American individuals, 2,284 European ancestry individuals	NA	4p15.33	CPEB2-AS1	rs7658942-?	NR	2E-6	(AA)			Illumina [9722417] (imputed)	N
699	chr4	14964788	14964790	rs202195249	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p15.33		rs202195249-C	NR	1E-10		0.0171	[0.012-0.022] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
699	chr4	14967168	14967169	rs1494950	24569950	Hatemi PK	2014-02-26	Behav Genet	Genetic influences on political ideologies: twin analyses of 19 measures of political ideologies from five democracies and genome-wide findings from three populations.	Political ideology	11,388 European ancestry individuals from 6,758 families	NA	4p15.33	NR	rs1494950-?		9E-6		0.3081	[0.17-0.44] unit decrease	Illumina [> 269840] (imputed)	N
699	chr4	15021184	15021185	rs9291634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4p15.32		rs9291634-?	NR	2E-9				NR [~ 8900000] (imputed)	N
699	chr4	15024132	15024133	rs184142803	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4p15.32	NR	rs184142803-?	NR	7E-6		0.4507	[0.26-0.64] unit decrease	Illumina [at least 560000] (imputed)	N
699	chr4	15036835	15036835	rs71648192	32009195	Condreay LD	2020-02-03	Rheumatol Int	Pharmacogenetic investigation of efficacy response to mepolizumab in eosinophilic granulomatosis with polyangiitis.	Average oral glucocorticoid dose in mepolizumab-treated eosinophilic granulomatosis with polyangiitis	61 individuals	NA	4p15.32	NR	rs71648192-?	NR	4E-6		1.0477	[0.65-1.45] unit increase	Affymetrix [7154205] (imputed)	N
699	chr4	15058244	15058245	rs2702576	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.32		rs2702576-A	0.3829	4E-10		0.009	[0.0063-0.0117] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
699	chr4	15058244	15058245	rs2702576	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs2702576-A	0.3829	3E-9	(MTAG)	0.008	[0.0055-0.0105] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
699	chr4	15059104	15059105	rs2702575	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p15.32		rs2702575-?	NR	6E-10				NR [~ 8900000] (imputed)	N
699	chr4	15072328	15072329	rs10433859	30134085	Zhang H	2018-07-01	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of cognitive flexibility assessed by the Wisconsin Card Sorting Test.	Cognitive flexibility	2,589 African American individuals, 2,284 European ancestry individuals	NA	4p15.32	CPEB2	rs10433859-?	NR	3E-7	(AA)			Illumina [9722417] (imputed)	N
700	chr4	15096522	15096523	rs7681288	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p15.32	CPEB2	rs7681288-G	0.335676	2E-8		0.0119313	[0.0078-0.0161] unit decrease	Affymetrix [NR] (imputed)	N
700	chr4	15099036	15099037	rs1902177	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p15.32	LOC101929095	rs1902177-C	0.415413	2E-14		0.0143641	[0.011-0.018] unit decrease	NR [13737936] (imputed)	N
700	chr4	15099036	15099037	rs1902177	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.32		rs1902177-?	NR	4E-18				NR [~ 8900000] (imputed)	N
700	chr4	15099036	15099037	rs1902177	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p15.32		rs1902177-?	NR	2E-14		0.016183	[0.012-0.02] unit decrease	Affymetrix [20259828] (imputed)	N
700	chr4	15099147	15099148	rs1823949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in medium VLDL	115,082 European ancestry individuals	NA	4p15.32		rs1823949-T	0.33649	2E-8		0.0240365	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15099147	15099148	rs1823949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in large VLDL	115,082 European ancestry individuals	NA	4p15.32		rs1823949-T	0.33649	2E-8		0.0235072	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15099147	15099148	rs1823949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in VLDL	115,082 European ancestry individuals	NA	4p15.32		rs1823949-T	0.33649	2E-8		0.0236886	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15099147	15099148	rs1823949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total lipid levels in large VLDL	115,082 European ancestry individuals	NA	4p15.32		rs1823949-T	0.33649	4E-8		0.0231543	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
700	chr4	15099147	15099148	rs1823949	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Concentration of large VLDL particles	115,082 European ancestry individuals	NA	4p15.32		rs1823949-T	0.33649	4E-8		0.0232638	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15101009	15101010	rs2702552	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Average diameter for VLDL particles	115,082 European ancestry individuals	NA	4p15.32		rs2702552-A	0.336481	6E-9		0.023815	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15105311	15105312	rs4698315	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4p15.32		rs4698315-G	0.336604	7E-9		0.023577	[0.016-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15106035	15106036	rs3857142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small VLDL	115,082 European ancestry individuals	NA	4p15.32		rs3857142-C	0.336594	8E-9		0.0244268	[0.016-0.033] unit decrease	NR [11722792] (imputed)	N
700	chr4	15106035	15106036	rs3857142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglyceride levels in small LDL	115,082 European ancestry individuals	NA	4p15.32		rs3857142-C	0.336594	4E-8		0.0233289	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15106035	15106036	rs3857142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Total triglycerides levels	115,082 European ancestry individuals	NA	4p15.32		rs3857142-C	0.336594	3E-8		0.0233936	[0.015-0.032] unit decrease	NR [11722792] (imputed)	N
700	chr4	15106035	15106036	rs3857142	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in chylomicrons and extremely large VLDL	115,082 European ancestry individuals	NA	4p15.32		rs3857142-C	0.336594	5E-8		0.0230813	[0.015-0.031] unit decrease	NR [11722792] (imputed)	N
700	chr4	15132603	15132604	rs4396983	31636452	Satizabal CL	2019-10-21	Nat Genet	Genetic architecture of subcortical brain structures in 38,851 individuals.	Brainstem volume	28,809 European ancestry individuals	341 South East and East Asian ancestry individuals, 85 African American individuals	4p15.32	NR	rs4396983-A	0.4349	8E-13		7.168	NR z score decrease	Affymetrix, Illumina [NR] (imputed)	N
700	chr4	15137721	15137722	rs2604566	33479058	Srinivasan S	2021-01-21	Diabetes	The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.	Type 2 diabetes	664 European ancestry youth cases, 1,068 African American youth cases, 1,274 Hispanic youth cases, 542 European ancestry youth controls, 314 African American youth controls	NA	4p15.32	CPEB2	rs2604566-?	NR	3E-8		2.1	NR	Illumina [~ 10000000] (imputed)	N
700	chr4	15147118	15147119	rs2702533	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p15.32	NR	rs2702533-?	NR	2E-9	(Brain stem)			NR [9227495] (imputed)	N
700	chr4	15183196	15183197	rs1455213	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (mother's age at death)	52,776 middle-aged British individuals	NA	4p15.32	NR	rs1455213-?	NR	4E-7		0.02659	[0.016-0.037] unit increase	Affymetrix [9658292] (imputed)	N
701	chr4	15233865	15233866	rs4074082	26962152	Offenbacher S	2016-03-08	Hum Mol Genet	Genome-wide association study of biologically informed periodontal complex traits offers novel insights into the genetic basis of periodontal disease.	Periodontal disease related phenotype (PCT3)	394 European American individuals with periodontal health, 389 European American individuals with mild-moderate periodontitis, 192 European American individuals with severe periodontitis	NA	4p15.32	C1QTNF7	rs4074082-?	NR	2E-8		0.55	[0.35-0.75] unit increase	Affymetrix [2135235] (imputed)	N
701	chr4	15234695	15234696	rs3934736	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.32	NR	rs3934736-?	NR	3E-6		4.672	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
701	chr4	15265144	15265145	rs115281615	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MII error vs fathers)	157 mothers, 645 fathers	NA	4p15.32	NR	rs115281615-?		6E-6		4.54	[NR]	Illumina [NR] (imputed)	N
701	chr4	15265144	15265145	rs115281615	31830031	Chernus JM	2019-12-12	PLoS Genet	A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21.	Maternal nondisjunction of chromosome 21 (MI error vs MII error)	535 mothers (meiosis I error), 157 mothers (meiosis II error)	NA	4p15.32	NR	rs115281615-?		7E-7		6.79	[NR]	Illumina [NR] (imputed)	N
701	chr4	15324455	15324456	rs80182028	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Chronic sinus infection	5,291 European ancestry cases, 79,622 European ancestry controls	NA	4p15.32	NR	rs80182028-?	NR	8E-6		0.2427	[0.14-0.35] unit increase	Illumina [at least 560000] (imputed)	N
702	chr4	15354384	15354385	rs114133078	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	PR interval in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.32	C1QTNF7	rs114133078-?	NR	2E-7				Affymetrix [5486770] (imputed)	N
702	chr4	15356794	15356795	rs13122790	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p15.32	C1QTNF7	rs13122790-A	0.732	7E-11		0.1283	[0.09-0.167] unit increase	Affymetrix, Illumina [~ 7100000] (imputed)	N
702	chr4	15370493	15370494	rs6449130	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4p15.32		rs6449130-T	NR	5E-9		0.0145	[0.0096-0.0194] unit decrease	Affymetrix, Illumina [20531022] (imputed)	N
702	chr4	15374560	15374561	rs10709523	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p15.32		rs10709523-G	NR	5E-9		0.0136	[0.0091-0.0181] unit decrease	Affymetrix, Illumina [20538670] (imputed)	N
702	chr4	15375072	15375073	rs4326010	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p15.32	NR	rs4326010-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
702	chr4	15375983	15375984	rs4303974	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Pulse pressure	360,863 European ancestry individuals, 145,445 East Asian ancestry individuals	NA	4p15.32		rs4303974-A	NR	1E-11		0.0137	[0.0098-0.0176] unit decrease	Affymetrix, Illumina [20537391] (imputed)	N
702	chr4	15380276	15380277	rs6449133	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4p15.32	NR	rs6449133-T	0.65	4E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix [2446094] (imputed)	N
702	chr4	15380276	15380277	rs6449133	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4p15.32	NR	rs6449133-T	0.65	5E-8				Affymetrix [2446094] (imputed)	N
702	chr4	15384543	15384544	rs4515160	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4p15.32	C1QTNF7	rs4515160-G	0.2604174557716	2E-7		0.0031546	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
702	chr4	15388376	15388377	rs13102822	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p15.32		rs13102822-?	NR	2E-10				NR [~ 8900000] (imputed)	N
702	chr4	15397363	15397364	rs16891867	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4p15.32	C1QTNF7	rs16891867-G	0.218	4E-6	(AA)	0.148	[NR] unit increase	Illumina [948658]	N
702	chr4	15397363	15397364	rs16891867	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder (symptom count)	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4p15.32	C1QTNF7	rs16891867-G	0.097	3E-9		0.15	[NR] unit increase	Illumina [948658]	N
702	chr4	15397905	15397906	rs1861046	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4p15.32	C1QTNF7	rs1861046-A	0.095	6E-8		1.65	[1.38-1.98]	Illumina [948658]	N
702	chr4	15402114	15402115	rs10032941	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.32		rs10032941-T	0.6365	3E-8		0.008	[0.0051-0.0109] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
702	chr4	15402114	15402115	rs10032941	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs10032941-T	0.6365	5E-9	(MTAG)	0.0079	[0.0052-0.0106] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
702	chr4	15426835	15426836	rs76386622	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	4p15.32	NR	rs76386622-C	0.016	5E-6		1.11	[0.64-1.58] unit increase	Illumina [9469131] (imputed)	N
702	chr4	15449023	15449024	rs62289301	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Joint mobility (Beighton score)	64,143 European ancestry individuals	NA	4p15.32	C1QTNF7, CC2D2A	rs62289301-?	NR	7E-7		0.07	[0.097-0.042] unit decrease	Illumina [12039492] (imputed)	N
702	chr4	15458424	15458425	rs2215810	33602968	Skuladottir AT	2021-02-18	Sci Rep	A meta-analysis uncovers the first sequence variant conferring risk of Bell's palsy.	Bell's palsy	4,714 European ancestry cases, 1,011,520 European ancestry controls	NA	4p15.32	intergenic	rs2215810-A	0.4372	7E-6		0.9091	NR	Affymetrix, Illumina [30341632] (imputed)	N
702	chr4	15458424	15458425	rs2215810	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.32	NR	rs2215810-A	0.438	8E-11		0.00710567	[0.005-0.0092] unit decrease	NR [9732723] (imputed)	N
702	chr4	15458597	15458598	rs4140932	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.32	NR	rs4140932-A	0.431	5E-8		0.014044522	[0.009-0.0191] unit decrease	NR [~ 10000000] (imputed)	N
703	chr4	15477811	15477812	rs13118306	32959083	Adewuyi EO	2020-09-21	Hum Genet	Genetic analysis of endometriosis and depression identifies shared loci and implicates causal links with gastric mucosa abnormality.	Endometriosis or depression (pleiotropy)	17,054 endometriosis cases, 170,756 European ancestry depression cases, 191,858 controls, 329,443 European ancestry controls	NA	4p15.32	NR	rs13118306-C		4E-8		0.0231304	[0.015-0.031] unit decrease	NR [6694342]	N
703	chr4	15482359	15482360	rs1861050	20585324	Dick DM	2010-06-27	Mol Psychiatry	Genome-wide association study of conduct disorder symptomatology.	Conduct disorder	872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls	NA	4p15.32	KIAA1345	rs1861050-T	0.063	8E-6		1.63	[1.31-2.01]	Illumina [948658]	N
703	chr4	15530849	15530850	rs190680301	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p15.32	NR	rs190680301-?	NR	9E-6		0.0077478	[0.0043-0.0112] unit decrease	Affymetrix [805426] (imputed)	N
703	chr4	15542196	15542197	rs16892135	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence	873 Finnish ancestry cases and 842 Finnish ancestry controls from 739 families	NA	4p15.32	NR	rs16892135-G	0.21778	3E-6		0.0989546	[0.06-0.14] unit increase	Illumina [9469131] (imputed)	N
703	chr4	15545409	15545410	rs9918079	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.32	CC2D2A	rs9918079-A	0.115	6E-6	(LDL )	0.04	[NR] mg/dL increase	Illumina [899892]	N
703	chr4	15558666	15558667	rs78223914	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	4p15.32	NR	rs78223914-A	0.017	5E-6		1.05	[0.6-1.5] unit increase	Illumina [9469131] (imputed)	N
703	chr4	15592863	15592864	rs7684446	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Red blood cell count	172,952 European ancestry individuals	NA	4p15.32	CC2D2A	rs7684446-T	0.4273	3E-9		0.02135863	[0.014-0.028] unit decrease	Affymetrix [~ 2500000] (imputed)	N
704	chr4	15603068	15603069	rs1134634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	350,473 European ancestry individuals, 129,832 East Asian ancestry individuals	NA	4p15.32		rs1134634-C	NR	3E-36		0.0251	[0.021-0.029] unit increase	Affymetrix, Illumina [20535844] (imputed)	N
704	chr4	15603068	15603069	rs1134634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular volume	129,832 East Asian ancestry individuals	NA	4p15.32		rs1134634-C	0.555543	6E-9		0.0210703	[0.014-0.028] unit increase	Illumina [13476266] (imputed)	N
704	chr4	15603068	15603069	rs1134634	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean corpuscular hemoglobin	350,472 European ancestry individuals, 128,028 East Asian ancestry individuals	NA	4p15.32		rs1134634-C	NR	3E-36		0.0252	[0.021-0.029] unit increase	Affymetrix, Illumina [20535878] (imputed)	N
704	chr4	15603068	15603069	rs1134634	34104963	Thompson A	2021-06-08	Hum Mol Genet	Assessing the impact of alcohol consumption on the genetic contribution to mean corpuscular volume.	Mean corpuscular volume	362,595 British ancestry individuals	NA	4p15.32		rs1134634-G	0.414	2E-24		0.11	[-0.14--0.09] % decrease	Affymetrix [NR] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean spheric corpuscular volume	408,112 British individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.58614	4E-25		0.023431374	[0.019-0.028] unit increase	Affymetrix [93095623] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean reticulocyte volume	408,112 British individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.586198	3E-14		0.017306302	[0.013-0.022] unit increase	Affymetrix [93095623] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular volume	408,112 British individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.586182	4E-48		0.0314067	[0.027-0.035] unit increase	Affymetrix [93095623] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Mean corpuscular hemoglobin	408,112 British individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.586185	7E-46		0.03181864	[0.027-0.036] unit increase	Affymetrix [93095623] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.578802	6E-27				Affymetrix, Illumina [24332387] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.586905	4E-28		0.02062	[0.017-0.024] SD unit decrease	Affymetrix, Illumina [50628390] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	696,882 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.580421	3E-64				Affymetrix, Illumina [24246363] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular volume	544,127 European ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.586925	4E-60		0.030164	[0.027-0.034] SD unit increase	Affymetrix, Illumina [50615308] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.57966	1E-60				Affymetrix, Illumina [20825802] (imputed)	N
704	chr4	15603068	15603069	rs1134634	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Mean corpuscular hemoglobin	486,823 European ancestry individuals	NA	4p15.32	NR	rs1134634-C	0.586082	2E-58		0.031515	[0.028-0.035] SD unit increase	Affymetrix, Illumina [50266654] (imputed)	N
704	chr4	15603068	15603069	rs1134634	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.591	1E-8		0.0069	[0.0045-0.0093] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
704	chr4	15603068	15603069	rs1134634	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Mean corpuscular hemoglobin	approximately 443,000 European ancestry individuals	NA	4p15.32		rs1134634-?	NR	7E-49				NR [~ 8900000] (imputed)	N
704	chr4	15603068	15603069	rs1134634	29403010	Kanai M	2018-02-05	Nat Genet	Genetic analysis of quantitative traits in the Japanese population links cell types to complex human diseases.	Mean corpuscular volume	108,256 Japanese ancestry individuals	NA	4p15.32	CC2D2A	rs1134634-?	NR	9E-11		0.02757	[0.019-0.036] unit increase novel	Illumina [6108953] (imputed)	N
704	chr4	15603068	15603069	rs1134634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular volume	172,433 European ancestry individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.5771	8E-20		0.03268116	[0.026-0.04] unit increase	Affymetrix [~ 2500000] (imputed)	N
704	chr4	15603068	15603069	rs1134634	27863252	Astle WJ	2016-11-17	Cell	The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.	Mean corpuscular hemoglobin	172,332 European ancestry individuals	NA	4p15.32	CC2D2A	rs1134634-C	0.577	3E-18		0.0313188	[0.024-0.038] unit increase	Affymetrix [~ 2500000] (imputed)	N
704	chr4	15603254	15603255	rs13118894	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4p15.32	CC2D2A	rs13118894-C	0.1644	9E-6	(African)			Illumina [4404269] (imputed)	N
704	chr4	15603254	15603255	rs13118894	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Initial pursuit acceleration	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4p15.32	CC2D2A	rs13118894-C	0.06312	6E-6				Illumina [4404269] (imputed)	N
704	chr4	15617657	15617658	rs12512883	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4p15.32	FBXL5	rs12512883-T	0.334659	1E-21		0.02233975	[0.018-0.027] unit decrease	Affymetrix [93095623] (imputed)	N
704	chr4	15646793	15646794	rs13133213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.32	Intergenic	rs13133213-A	0.4991	7E-10	(MTAG)	0.0101	[0.007-0.0132] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
704	chr4	15646793	15646794	rs13133213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.32		rs13133213-A	0.498	8E-12		0.0096	[0.0069-0.0123] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
704	chr4	15646793	15646794	rs13133213	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs13133213-A	0.498	2E-12	(MTAG)	0.0092	[0.0067-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
704	chr4	15646940	15646941	rs7657257	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	BST1, FBXL5, CC2D2A, FAM200B	rs7657257-A	0.03560682	2E-26	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	1.206	[0.99-1.42] unit decrease	Affymetrix [509946]	N
704	chr4	15647073	15647074	rs7683000	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.32	BST1	rs7683000-G	0.17	8E-26	(2'-deoxyguanosine)	0.479	[0.39-0.57] unit decrease	Illumina [7750367] (imputed)	N
704	chr4	15647328	15647329	rs4698407	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p15.32		rs4698407-?	NR	3E-22				NR [~ 8900000] (imputed)	N
704	chr4	15647991	15647991	rs35373918	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4p15.32		rs35373918-AT	NR	5E-17		0.018	[0.014-0.022] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
704	chr4	15655763	15655764	rs71601486	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.32		rs71601486-?	NR	4E-9				NR [~ 8900000] (imputed)	N
704	chr4	15660264	15660265	rs148832049	29532581	Hallfors J	2018-03-13	Addict Biol	Genome-wide association study in Finnish twins highlights the connection between nicotine addiction and neurotrophin signaling pathway.	Nicotine dependence symptom count	1,715 Finnish ancestry ever smoker individuals from 739 families	NA	4p15.32	NR	rs148832049-T	0.017	3E-6		1.1	[0.63-1.57] unit increase	Illumina [9469131] (imputed)	N
704	chr4	15664534	15664535	rs1789	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	FBXL5, CC2D2A, RP11-799M12.2, FAM200B	rs1789-G	0.361809	4E-20	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	0.4142	[0.33-0.5] unit increase	Affymetrix [509946]	N
704	chr4	15669665	15669666	rs36082259	31451708	Hellwege JN	2019-08-26	Nat Commun	Mapping eGFR loci to the renal transcriptome and phenome in the VA Million Veteran Program.	Estimated glomerular filtration rate in non-diabetics	152,624 European ancestry individuals, 36,369 African American individuals	NA	4p15.32	FBXL5	rs36082259-T	0.386	3E-11		0.36	[0.25-0.47] unit decrease	Affymetrix [NR] (imputed)	N
704	chr4	15699792	15699793	rs73224656	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.32	BST1	rs73224656-A	0.13	4E-43	(3-methylcytidine)	0.304	[0.26-0.35] unit increase	Illumina [7750367] (imputed)	N
704	chr4	15709191	15709192	rs2302465	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	FAM200B, FBXL5, BST1, RP11-799M12.2, CC2D2A, RP11-115L11.1	rs2302465-A	0.1256281	1E-108	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	1.307	[1.21-1.41] unit decrease	Affymetrix [509946]	N
704	chr4	15709251	15709252	rs2302464	28031287	Sasayama D	2016-11-26	Hum Mol Genet	Genome-wide quantitative trait loci mapping of the human cerebrospinal fluid proteome.	Cerebrospinal fluid biomarker levels	133 Japanese ancestry individuals.	NA	4p15.32	NR	rs2302464-?	NR	5E-28	(ADP-ribosyl cyclase 2)			Illumina [514227]	N
704	chr4	15713002	15713003	rs16892260	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p15.32	BST1	rs16892260-G	0.846875	9E-630	(BST1, 4535_50_2)	1.4978095	[1.45-1.54] unit increase	Illumina [> 1000000] (imputed)	N
704	chr4	15714188	15714189	rs73224659	32492067	Ruffieux H	2020-06-03	PLoS Comput Biol	A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma.	Protein quantitative trait loci	394 European ancestry individuals	548 European ancestry individuals	4p15.32	NR	rs73224659-?	NR	1E-134	(BST1)			Illumina [~ 4000000] (imputed)	N
704	chr4	15714761	15714762	rs73224660	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p15.32	BST1	rs73224660-A	0.159	2E-744	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2, BST1.4535.50.2)	1.4	[1.36-1.44] unit decrease	Affymetrix [10572788] (imputed)	N
704	chr4	15727712	15727713	rs6449168	32310270	Foo JN	2020-04-20	JAMA Neurol	Identification of Risk Loci for Parkinson Disease in Asians and Comparison of Risk Between Asians and Europeans: A Genome-Wide Association Study.	Parkinson's disease	6,724 East Asian ancestry cases, 24,851 East Asian ancestry controls	57,545 European ancestry cases, 1,868,816 European ancestry controls, 988 Japanese ancestry cases, 2,521 Japanese ancestry controls	4p15.32	BST1	rs6449168-?	NR	4E-7				Illumina [5843213] (imputed)	N
705	chr4	15737100	15737101	rs11724635	28892059	Chang D	2017-09-11	Nat Genet	A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	5,851 European ancestry cases, 5,866 European ancestry controls	4p15.32	FAM200B, CD38	rs11724635-A	0.548	1E-19		1.1111112	[1.09-1.14]	Illumina [11933700] (imputed)	N
705	chr4	15737100	15737101	rs11724635	25064009	Nalls MA	2014-07-27	Nat Genet	Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's disease.	Parkinson's disease	13,708 European ancestry cases, 95,282 European ancestry controls	5,353 European ancestry cases, 5,551 European ancestry controls	4p15.32	BST1	rs11724635-A	0.553	9E-18		1.126	[1.1-1.15]	Illumina [7893274] (imputed)	N
705	chr4	15737100	15737101	rs11724635	21292315	Nalls MA	2011-02-01	Lancet	Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease	5,333 European ancestry cases, 12,019 European ancestry controls	7,053 cases, 9,007 controls	4p15.32	BST1	rs11724635-A	0.56	1E-16		1.15	[1.11-1.19]	Illumina [7689524] (imputed)	N
705	chr4	15737117	15737118	rs4266290	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Parkinson's disease	9,619 European ancestry cases, 324,522 European ancestry controls	NA	4p15.32	BST1, CD38	rs4266290-?	NR	8E-11		1.128	[1.088-1.171]	Illumina [12438219] (imputed)	N
705	chr4	15737347	15737348	rs4698412	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4p15.32	BST1	rs4698412-A	0.5529	2E-28		0.1035	[0.085-0.122] unit increase	NR [7784415] (imputed)	N
705	chr4	15737347	15737348	rs4698412	22451204	Pankratz N	2012-03-01	Ann Neurol	Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2.	Parkinson's disease	4,238 European ancestry cases, 4,239 European ancestry controls	3,738 European ancestry cases, 2,111 European ancestry controls	4p15.32	BST1	rs4698412-?	NR	3E-7		1.14	[NR]	Illumina [2500000] (imputed)	N
705	chr4	15737347	15737348	rs4698412	21084426	Saad M	2010-11-17	Hum Mol Genet	Genome-wide association study confirms BST1 and suggests a locus on 12q24 as the risk loci for Parkinson's disease in the European population.	Parkinson's disease	1,039 European ancestry cases, 1,984 European ancestry controls	3,232 European ancestry cases, 7,064 European ancestry controls	4p15.32	BST1	rs4698412-A	0.55	2E-6		1.14	[1.08-1.20]	Illumina [492929]	N
705	chr4	15737731	15737732	rs28404156	31423876	Singh S	2019-08-19	J Am Heart Assoc	Genome-Wide Meta-Analysis of Blood Pressure Response to ?1-Blockers: Results From ICAPS (International Consortium of Antihypertensive Pharmacogenomics Studies).	Response to beta blocker use in hypertension (systolic blood pressure)	1,254 European ancestry individuals	1,552 European ancestry individuals, 315 African American individuals	4p15.32	BST1	rs28404156-A	0.072	2E-7	(EA)	3.6	[2.25-4.95] unit decrease	Affymetrix, Illumina [6596214] (imputed)	N
705	chr4	15737889	15737890	rs4613561	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p15.32	NR	rs4613561-C	0.254	2E-542	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2, BST1.4535.50.2)	1.07	[1.03-1.11] unit decrease	Affymetrix [10572788] (imputed)	N
705	chr4	15737936	15737937	rs4538475	19915576	Satake W	2009-11-15	Nat Genet	Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease.	Parkinson's disease	988 Japanese ancestry cases, 2,521 Japanese ancestry controls	933 Japanese ancestry cases, 15,753 Japanese ancestry controls	4p15.32	BST1	rs4538475-?	NR	3E-9		1.24	[1.16-1.34]	Illumina [435470]	N
705	chr4	15742128	15742129	rs3893377	21685187	Siedlinski M	2011-06-16	Thorax	Genome-wide association study of smoking behaviours in patients with COPD.	Current cigarettes per day in chronic obstructive pulmonary disease	1,113 European ancestry cases	NA	4p15.32	BST1	rs3893377-C	0.8	5E-6		0.289	unit increase	Illumina [~ 6300000] (imputed)	N
705	chr4	15742715	15742716	rs1110258	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	BST1, RP11-442P12.2	rs1110258-G	0.2462387	3E-12	(EA, ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	0.3586	[0.26-0.46] unit increase	Affymetrix [509946]	N
705	chr4	15753569	15753570	rs12651314	32201043	Smeland OB	2020-02-08	Biol Psychiatry	Genome-wide Association Analysis of Parkinson's Disease and Schizophrenia Reveals Shared Genetic Architecture and Identifies Novel Risk Loci.	Parkinson's disease	20,184 European ancestry cases, 397,324 European ancestry controls	NA	4p15.32	BST1	rs12651314-T		2E-11		0.1179	[0.083-0.152] unit decrease	Illumina [NR]	N
705	chr4	15753569	15753570	rs12651314	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	RP11-442P12.2	rs12651314-T	0.1972892	4E-58	(ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	0.8658	[0.77-0.96] unit decrease	Affymetrix [509946]	N
705	chr4	15762969	15762970	rs16892391	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.32	NR	rs16892391-?	NR	9E-7				Affymetrix [NR]	N
705	chr4	15769229	15769230	rs13117281	31320639	Hillary RF	2019-07-18	Nat Commun	Genome and epigenome wide studies of neurological protein biomarkers in the Lothian Birth Cohort 1936.	Neurological blood protein biomarker levels	750 European ancestry individuals	NA	4p15.32	CD38	rs13117281-C	0.2284	1E-10	(CD38)	0.40232	[0.28-0.52] unit decrease	Illumina [8683751] (imputed)	N
705	chr4	15770910	15770911	rs4473651	28240269	Suhre K	2017-02-27	Nat Commun	Connecting genetic risk to disease end points through the human blood plasma proteome.	Blood protein levels	997 European ancestry individuals	338 Arab, South Asian and Filipino ancestry individuals	4p15.32	CD38	rs4473651-A	0.110161	2E-12	(EA, ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2)	0.4968	[0.36-0.63] unit decrease	Affymetrix [509946]	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell %lymphocyte	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02184	3E-8		0.453	[0.29-0.61] unit decrease	Illumina [18238287] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell %B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02183	4E-8		0.4491	[0.29-0.61] unit decrease	Illumina [18238311] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on transitional B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02183	2E-55		1.293	[1.13-1.45] unit decrease	Illumina [18238311] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on naive-mature B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02184	1E-35		1.04	[0.88-1.2] unit decrease	Illumina [18238281] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD- CD38dim B cell	3,657 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02183	3E-45		1.151	[0.99-1.31] unit decrease	Illumina [18238311] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ CD38dim B cell	3,654 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02185	1E-56		1.329	[1.17-1.49] unit decrease	Illumina [18238118] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ CD38+ B cell	3,652 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02186	1E-35		1.037	[0.88-1.2] unit decrease	Illumina [18238137] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ CD24- B cell	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02184	3E-29		0.9442	[0.78-1.11] unit decrease	Illumina [18238281] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD38 on IgD+ B cell	3,658 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02182	4E-17		0.7114	[0.55-0.88] unit decrease	Illumina [18238556] (imputed)	N
705	chr4	15836694	15836695	rs11724146	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD27 on Plasma Blast-Plasma Cell	3,651 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11724146-G	0.02173	1E-10		0.5312	[0.37-0.69] unit increase	Illumina [18236544] (imputed)	N
706	chr4	15892158	15892159	rs4364259	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	496,946 European ancestry individuals	NA	4p15.32		rs4364259-?	NR	2E-11		0.0172408	[0.012-0.022] unit increase	NR [6912294] (imputed)	N
706	chr4	15892158	15892159	rs4364259	32242144	Revez JA	2020-04-02	Nat Commun	Genome-wide association study identifies 143 loci associated with 25 hydroxyvitamin D concentration.	Serum 25-Hydroxyvitamin D levels	417,580 European ancestry individuals	NA	4p15.32		rs4364259-G	0.797852	3E-11		0.016	[0.01-0.022] unit increase	NR [7250403] (imputed)	N
706	chr4	15901525	15901526	rs11733310	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	Transitional B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11733310-G	0.02591	1E-8		0.4284	[0.28-0.58] unit decrease	Illumina [18238287] (imputed)	N
706	chr4	15901525	15901526	rs11733310	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	IgD+ CD38+ B cell Absolute Count	3,656 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs11733310-G	0.02591	8E-9		0.4291	[0.28-0.57] unit decrease	Illumina [18238287] (imputed)	N
706	chr4	15910046	15910047	rs56219219	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Vitamin D levels	327,435 European ancestry individuals, 5,845 African ancestry individuals, 6,425 South Asian ancestry individuals	NA	4p15.32	NR	rs56219219-T	NR	2E-9		0.0221	[0.015-0.029] unit increase	Affymetrix [9000000] (imputed)	N
706	chr4	15942870	15942871	rs28736332	34737425	Mansour Aly D	2021-11-04	Nat Genet	Genome-wide association analyses highlight etiological differences underlying newly defined subtypes of diabetes.	Severe insulin-deficient type 2 diabetes	1,193 Scandinavian ancestry cases, 2,744 Scandinavian ancestry controls	NA	4p15.32	FGFBP1	rs28736332-C	0.048	7E-7		1.844	[1.447 - 2.351]	Illumina [5398302] (imputed)	N
706	chr4	15964862	15964863	rs4698433	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	4p15.32	FGFBP2	rs4698433-T		6E-6		7.23	[NR] ms increase	Illumina [> 930000]	N
707	chr4	15995124	15995125	rs17387100	24964207	Mullins N	2014-06-25	Am J Med Genet B Neuropsychiatr Genet	Genetic relationships between suicide attempts, suicidal ideation and major psychiatric disorders: a genome-wide association and polygenic scoring study.	Suicide attempts in depression or bipolar disorder	426 European ancestry cases, 2,844 European ancestry controls	NA	4p15.32	PROM1	rs17387100-G	0.078	8E-7		1.76	[1.54-1.99]	Illumina [up to 503016]	N
707	chr4	16002287	16002288	rs17478107	20707712	Mosing MA	2010-08-01	Twin Res Hum Genet	A genome-wide association study of self-rated health.	Self-rated health	6,706 European individuals from 2,585 independent families	NA	4p15.32	PROM1	rs17478107-C	0.28	9E-6		0.02	[NR] unit decrease	Illumina [2380486] (imputed)	N
707	chr4	16012785	16012786	rs116130729	29531279	Zhou S	2018-03-12	Sci Rep	Genome-wide association analysis identifies new candidate risk loci for familial intracranial aneurysm in the French-Canadian population.	Intracranial aneurysm	173 French Canadian cases, 1,772 French Canadian controls	2,617 cases, 1,416 controls	4p15.32	PROM1	rs116130729-?		2E-7	(French Canadians)	3.2881217		Illumina [7614484] (imputed)	N
707	chr4	16018323	16018324	rs2531154	23064961	Shaffer JR	2012-10-11	J Dent Res	GWAS of dental caries patterns in the permanent dentition.	Dental caries	920 European ancestry individuals	NA	4p15.32	PROM1	rs2531154-?	NR	9E-7	(DMFS5max)			Illumina [518997]	N
707	chr4	16022539	16022540	rs2677780	23470693	Zeng Z	2013-03-07	J Dent Res	Genome-wide association studies of pit-and-fissure- and smooth-surface caries in permanent dentition.	Smooth-surface caries	982 European ancestry individuals	NA	4p15.32	NR	rs2677780-A	0.9356	2E-6		6.3471	[NR] unit decrease	Illumina [1200000] (imputed)	N
707	chr4	16032947	16032948	rs11730129	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Pulse pressure	757,601 European ancestry individuals	NA	4p15.32	PROM1	rs11730129-T	0.2179	1E-10		0.1608	[0.11-0.21] unit decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
707	chr4	16037083	16037084	rs2292804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.32	PROM1	rs2292804-C	0.225608	3E-9	(-18 ms)	0.0397178	[0.027-0.053] unit decrease	Affymetrix [10000000] (imputed)	N
707	chr4	16037083	16037084	rs2292804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.32	PROM1	rs2292804-C	0.225608	3E-8	(-20 ms)	0.0375823	[0.024-0.051] unit decrease	Affymetrix [10000000] (imputed)	N
707	chr4	16037083	16037084	rs2292804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.32	PROM1	rs2292804-C	0.225608	2E-9	(-16 ms)	0.0390552	[0.026-0.052] unit decrease	Affymetrix [10000000] (imputed)	N
707	chr4	16037083	16037084	rs2292804	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.32	PROM1	rs2292804-C	0.225608	2E-8	(-14 ms)	0.035972	[0.023-0.049] unit decrease	Affymetrix [10000000] (imputed)	N
707	chr4	16118142	16118143	rs10006258	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs10006258-A	0.0122	1E-8	(FERMT2)	0.08025	NR unit increase	Illumina [1671387] (imputed)	N
707	chr4	16118499	16118500	rs59199268	34512620	Matzaraki V	2021-08-26	Front Immunol	Inflammatory Protein Profiles in Plasma of Candidaemia Patients and the Contribution of Host Genetics to Their Variability.	Candida albicans stimulated MCP-2 levels	378 European ancestry individuals	NA	4p15.32		rs59199268-?	NR	1E-8		5.71	z-score increase	Illumina [NR] (imputed)	N
707	chr4	16119671	16119672	rs894638	26420894	Wuttke M	2015-09-28	Nephrol Dial Transplant	Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.	Glomerular filtration rate in chronic kidney disease	up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases	NA	4p15.32	PROM1, TAPT1	rs894638-C	0.19	8E-6	(EA)	0.1	[0.061-0.139] unit decrease	Illumina [~ 8300000] (imputed)	N
708	chr4	16156665	16156666	rs317865	27647854	Sandholm N	2016-09-19	J Am Soc Nephrol	The Genetic Landscape of Renal Complications in Type 1 Diabetes.	Kidney disease (early stage) in type 1 diabetes	555 European ancestry cases, 245 cases, 1,903 European ancestry controls, 690 controls	602 cases, 1,459 controls	4p15.32	NR	rs317865-G	0.12	2E-6		1.37	[1.19-1.57]	Illumina [NR] (imputed)	N
708	chr4	16167953	16167954	rs2271749	24665060	Argos M	2014-03-24	J Med Genet	Genome-wide association study of smoking behaviours among Bangladeshi adults.	Smoking initiation	754 Bangladeshi ancestry never smoker males, 2,565 Bangladeshi ancestry never smoker females, 1,837 Bangladeshi ancestry ever smoker males, 198 Bangladeshi ancestry ever smoker females	NA	4p15.32	NR	rs2271749-?		3E-6	(females)			Illumina [1211988] (imputed)	N
708	chr4	16241718	16241719	rs35396788	30014611	Weiss RB	2018-07-16	Ann Neurol	Long-range genomic regulators of THBS1 and LTBP4 modify disease severity in Duchenne muscular dystrophy.	Age at loss of ambulation in Duchenne muscular dystrophy	243 European ancestry cases, 10 cases	NA	4p15.32	NR	rs35396788-?	NR	8E-6				Illumina [1735619]	N
709	chr4	16277861	16277862	rs28608599	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs28608599-T	0.7197	2E-9	(MTAG)	0.0087	[0.0058-0.0116] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
709	chr4	16293151	16293152	rs16893287	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.32	NR	rs16893287-?	NR	3E-7		5.102	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
709	chr4	16322540	16322541	rs6821068	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.32	Intergenic	rs6821068-C	0.7512	9E-9	(MTAG)	0.0152	[0.0099-0.0205] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
709	chr4	16325338	16325339	rs4066790	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4p15.32		rs4066790-?	NR	7E-9				NR [7857346] (imputed)	N
709	chr4	16332381	16332382	rs4484297	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.32	Intergenic	rs4484297-C	0.2462	1E-9	(MTAG)	0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
709	chr4	16332381	16332382	rs4484297	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p15.32	NR	rs4484297-C	NR	7E-9		5.78	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
710	chr4	16395888	16395889	rs143059626	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lateral ventricle temporal horn volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.32	NR	rs143059626-?		4E-6				Illumina [4322238] (imputed)	N
710	chr4	16397066	16397067	rs1501138	27927641	Ombrello MJ	2016-12-07	Ann Rheum Dis	Genetic architecture distinguishes systemic juvenile idiopathic arthritis from other forms of juvenile idiopathic arthritis: clinical and therapeutic implications.	Systemic juvenile idiopathic arthritis	178 European ancestry cases, 434 European ancestry controls, 81 Hispanic/Latin American cases, 177 Hispanic/Latin American controls, 511 cases, 6,336 controls	NA	4p15.32	LDB2, TAPT1, ZEB2P1	rs1501138-?		4E-6	(Dominant)	3.333333	[2-5]	Illumina [5600610] (imputed)	N
710	chr4	16401770	16401771	rs75928541	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	TRAIL levels	8,186 Finnish ancestry individuals	NA	4p15.32	NR	rs75928541-G		4E-6		0.275	[0.16-0.39] SD units decrease	NR [10700000] (imputed)	N
710	chr4	16414809	16414810	rs17420654	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.32	ENSG00000248138	rs17420654-T	NR	4E-8		5.499	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
710	chr4	16435083	16435084	rs56040212	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Morningness	434,835 European ancestry individuals	NA	4p15.32		rs56040212-A	0.2421	2E-8		0.014	[0.0081-0.0199] unit decrease	Affymetrix, Illumina [11597492] (imputed)	N
710	chr4	16502766	16502767	rs55756123	28763429	Serie DJ	2017-07-31	Pharmacogenet Genomics	Genome-wide association study of cardiotoxicity in the NCCTG N9831 (Alliance) adjuvant trastuzumab trial.	Change in LVEF in response to paclitaxel and trastuzumab in HER2+ breast cancer	800 European ancestry cases	NA	4p15.32	LDB2	rs55756123-?	NR	9E-8		6.11	[3.89-8.32] unit decrease	Affymetrix [618793]	N
710	chr4	16514407	16514408	rs955943	23585552	Kirin M	2013-04-11	Hum Mol Genet	Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.	Rhegmatogenous retinal detachment	867 European ancestry cases, 1,953 European ancestry controls	1,966 European ancestry cases, 5,918 European ancestry controls	4p15.32	LDB2	rs955943-A	0.067	5E-6		1.41	[1.21-1.64]	Illumina [299737]	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	9E-11	(CNN2)	0.02192	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	7E-9	(CKB)	0.03304	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	7E-11	(DCN)	0.06995	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	6E-9	(LUM)	0.2943	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	4E-9	(LDHB)	0.1696	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	2E-9	(SEPT7)	0.07659	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	2E-9	(PRELP)	0.1567	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	2E-8	(FLNA)	1.159	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	2E-8	(CAPN2)	0.05706	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	1E-9	(PARVA)	0.03201	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	1E-9	(FKBP1A)	0.03428	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16547143	16547144	rs16893618	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.32	NR	rs16893618-G	0.01045	1E-8	(TSN)	0.01979	NR unit increase	Illumina [1671387] (imputed)	N
711	chr4	16586673	16586674	rs111896170	30787463	Escala-Garcia M	2019-02-21	Br J Cancer	Genome-wide association study of germline variants and breast cancer-specific mortality.	Breast cancer specific mortality in estrogen receptor negative breast cancer	2,125 European ancestry cases, 14,047 European ancestry controls	NA	4p15.32	NR	rs111896170-?	NR	1E-6		1.7095189	[1.38-2.12]	Affymetrix, Illumina [~ 10400000] (imputed)	N
711	chr4	16600663	16600664	rs6818414	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.32	NA	rs6818414-T	0.5164	5E-9		0.01	[0.0067-0.0133] unit decrease	NR [~ 27400000] (imputed)	N
711	chr4	16616269	16616272	rs57769876	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.32		rs57769876-A	NR	5E-9		0.0113	[0.0076-0.015] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
712	chr4	16648245	16648246	rs3763969	33002292	Shinohara T	2020-10-01	J Cell Mol Med	Inherited genetic variants associated with glucocorticoid sensitivity in leukaemia cells.	Glucocorticoid receptor gene expression in B-cell precursor acute lymphoblastic leukaemia	72 Japanese ancestry leukaemic cell lines	NA		LDB2	rs3763969-?	NR	1E-5				Illumina [331281]	N
712	chr4	16729316	16729317	rs283015	31969693	Coleman JRI	2020-01-23	Mol Psychiatry	Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank.	Trauma exposure	35,269 European ancestry cases, 63,451 European ancestry controls	NA	4p15.32	NR	rs283015-C	0.664685	2E-6		1.0683761	[1.04-1.1]	Affymetrix [7791636] (imputed)	N
713	chr4	16818205	16818205	rs398107035	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.32		rs398107035-AT	NR	3E-9		0.0103	[0.007-0.0136] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
713	chr4	16827748	16827749	rs158271	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p15.32	LDB2	rs158271-C	0.4111	5E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
713	chr4	16827748	16827749	rs158271	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference	1,254 whole genome sequenced European ancestry individuals, 3,072 whole genome sequenced individuals, 41,450 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,060 Mylopotamos (founder/genetic isolate) individuals, 887 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,737 European ancestry individuals	4p15.32	LDB2	rs158271-C	0.4111	5E-6		0.0316	[0.018-0.045] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
713	chr4	16831811	16831812	rs49969	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	4p15.32	LDB2	rs49969-T	0.6369	1E-8		0.0139964195	[0.0092-0.0188] unit decrease	Affymetrix [11515109] (imputed)	N
713	chr4	16843909	16843910	rs2108935	32953199	Liu Z	2019-03-01	J BioX Res	Integrative omics analysis identifies macrophage migration inhibitory factor signaling pathways underlying human hepatic fibrogenesis and fibrosis.	Liver fibrosis (total hepatic collagen content)	102 European ancestry individuals, 19 African ancestry individuals	NA	4p15.32	LDB2	rs2108935-G	0.2541	2E-6		0.2545	[0.16-0.35] unit decrease	Illumina [533687]	N
713	chr4	16893169	16893170	rs2035442	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.32		rs2035442-?	NR	7E-8				NR [~ 8900000] (imputed)	N
713	chr4	16893892	16893893	rs1483012	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	4p15.32	LDB2	rs1483012-G		7E-6		6.02	[NR] ms increase	Illumina [> 930000]	N
713	chr4	16908003	16908004	rs6819013	23534349	Jeff JM	2013-03-28	Ann Hum Genet	Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.	QT interval	455 African American individuals	NA	4p15.32	intergenic	rs6819013-A		6E-6		6.06	[NR] ms increase	Illumina [> 930000]	N
714	chr4	16912716	16912717	rs10012525	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4p15.32	Intergenic	rs10012525-?	NR	5E-6		1.836	[NR]	Affymetrix [492217] (imputed)	N
715	chr4	17045910	17045911	rs1980129	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.32		rs1980129-A	0.4738	1E-9		0.0085	[0.0058-0.0112] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
715	chr4	17062268	17062269	rs10022937	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p15.32		rs10022937-?	NR	1E-9				NR [~ 8900000] (imputed)	N
715	chr4	17062951	17062952	rs828154	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	4p15.32	intergenic	rs828154-G	0.485	1E-6			[NR]	Illumina [625127]	N
715	chr4	17070367	17070368	rs573762110	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4p15.32	RP11-141E13.1	rs573762110-A	0.0014	8E-6		1.0197	[0.57-1.47] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
715	chr4	17105846	17105847	rs1879752	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs1879752-C	0.5335	4E-9	(MTAG)	0.0077	[0.0052-0.0102] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
715	chr4	17107476	17107477	rs58528263	35047858	Polikowsky HG	2021-12-02	HGG Adv	Population-based genetic effects for developmental stuttering.	Developmental stuttering	250 African ancestry cases, 1,910 African ancestry controls, 160 Hispanic ancestry cases, 1,186 Hispanic ancestry controls, 42 East Asian ancestry cases, 113 East Asian ancestry controls, 1,565 European ancestry cases, 10,434 European ancestry controls, 44 South Asian ancestry cases, 143 South Asian ancestry controls, 4 Native American ancestry cases, 32 Native American ancestry controls, 44 Asian ancestry cases, 404 Asian ancestry controls, 21 cases, 109 controls	NA	4p15.32		rs58528263-G	0.249	3E-7		5.102	z score increase	Illumina [7275796] (imputed)	N
715	chr4	17135342	17135343	rs4698169	22365631	Greenwood TA	2012-02-22	Biol Psychiatry	Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci.	Temperament (bipolar disorder)	1,263 European ancestry cases, 1,434 European ancestry controls	NA	4p15.32	intergenic	rs4698169-?	NR	2E-6	(Anxious)	2.11	[NR] unit increase	Affymetrix [703012]	N
716	chr4	17221232	17221233	rs12643440	23934736	Yu B	2013-08-11	Genet Epidemiol	Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.	Metabolite levels (Pyroglutamine)	1,260 African American individuals	NA	4p15.32	LOC729006	rs12643440-C		5E-6		0.17	[-0.10-0.25] unit decrease	Affymetrix [~ 2500000] (imputed)	N
716	chr4	17259415	17259416	rs642395	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p15.32		rs642395-A	0.38	6E-9		5.81	z score increase	Affymetrix [9061022] (imputed)	N
716	chr4	17259415	17259416	rs642395	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p15.32	NR	rs642395-A	0.3997	7E-9				NR [9056863] (imputed)	N
716	chr4	17259907	17259908	rs144246	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p15.32	NR	rs144246-A	NR	5E-8		5.455	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
716	chr4	17262431	17262432	rs485161	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.32	NR	rs485161-?	NR	7E-6		4.487	z-score decrease	Affymetrix, Illumina [at least 2500000] (imputed)	N
716	chr4	17273999	17274000	rs10027881	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 61)	19,670 European ancestry individuals	NA	4p15.32		rs10027881-?	NR	4E-8				NR [9705931] (imputed)	N
716	chr4	17279481	17279482	rs11932176	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.32	Intergenic	rs11932176-T	0.4194	2E-8	(MTAG)	0.0094	[0.0061-0.0127] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
716	chr4	17279481	17279482	rs11932176	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.32	Intergenic	rs11932176-T	0.4154	4E-8	(MTAG)	0.0075	[0.0048-0.0102] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
716	chr4	17279516	17279517	rs11932181	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous tooth surfaces)	96 African American children	NA	4p15.32	NR	rs11932181-?		5E-6		5.766	[2.51-9.02] unit decrease	Illumina [~ 4900000] (imputed)	N
716	chr4	17279516	17279517	rs11932181	31533690	Orlova E	2019-09-18	BMC Oral Health	Pilot GWAS of caries in African-Americans shows genetic heterogeneity.	Dental caries (decayed and filled deciduous teeth)	96 African American children	NA	4p15.32	NR	rs11932181-?		2E-6		2.104	[1.3-2.91] unit decrease	Illumina [~ 4900000] (imputed)	N
717	chr4	17368422	17368423	rs1450667	27082954	Ward-Caviness CK	2016-04-15	PLoS One	Genetic Variants in the Bone Morphogenic Protein Gene Family Modify the Association between Residential Exposure to Traffic and Peripheral Arterial Disease.	Peripheral arterial disease (traffic-related air pollution interaction)	104 European ancestry cases, 1,519 European ancestry controls, 34 African American cases, 520 African American controls	NA	4p15.32	NR	rs1450667-?	NR	5E-6	(AA)	198.6	[188.56-208.64]	Illumina [905956]	N
717	chr4	17368534	17368535	rs1376184	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.32	CLRN2	rs1376184-?	NR	5E-6	(cystathionine)	0.45783824	[0.26-0.65] unit decrease	Affymetrix [at least 2500000] (imputed)	N
717	chr4	17388158	17388159	rs77485526	29059683	Michailidou K	2017-10-23	Nature	Association analysis identifies 65 new breast cancer risk loci.	Breast cancer	76,192 European ancestry cases, 63,082 European ancestry controls	46,785 European ancestry cases, 42,892 European ancestry controls, 14,068 East Asian ancestry cases, 13,104 East Asian ancestry controls	4p15.32	NR	rs77485526-T	0.0325	2E-6	(EA)	0.0895	[0.052-0.127] unit increase	Illumina [~ 11800000] (imputed)	N
718	chr4	17435089	17435090	rs2518590	21844884	Wheeler HE	2011-08-16	Pharmacogenomics J	Genome-wide meta-analysis identifies variants associated with platinating agent susceptibility across populations.	Response to platinum-based chemotherapy (carboplatin)	176 Sub-Saharan African ancestry lymphoblastoid cell lines, 83 African ancestry lymphoblastoid cell lines, 175 East Asian ancestry lymphoblastoid cell lines, 174 European ancestry lymphoblastoid cell lines	NA	4p15.32	intergenic	rs2518590-?		8E-6				NR [~ 3000000] (imputed)	N
718	chr4	17517557	17517558	rs13148153	32986727	Kalra G	2020-09-28	PLoS Genet	Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty.	Age-related hearing impairment (MTAG)	330,759 European ancestry individuals	NA	4p15.32		rs13148153-?	NR	7E-9		5.7839236	z score increase	Affymetrix [NR] (imputed)	N
718	chr4	17520065	17520066	rs28719835	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p15.32	QDPR	rs28719835-T	0.243	1E-94	(Dihydropteridine reductase, QDPR.11257.1.3)	0.57	[0.51-0.63] unit decrease	Affymetrix [10572788] (imputed)	N
718	chr4	17523906	17523907	rs28458311	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p15.32	QDPR	rs28458311-A	0.7309375	2E-23	(QDPR, 11257_1_3)	0.27567708	[0.22-0.33] unit increase	Illumina [> 1000000] (imputed)	N
718	chr4	17524569	17524570	rs13147559	34108613	Ivarsdottir EV	2021-06-09	Commun Biol	The genetic architecture of age-related hearing impairment revealed by genome-wide association analysis.	Age-related hearing impairment	121,934 European ancestry cases, 591,699 European ancestry controls	NA	4p15.32	CLRN2	rs13147559-G	13.17	4E-11	(additive)	1.05	[NR]	Affymetrix, Illumina [46900000] (imputed)	N
718	chr4	17525557	17525558	rs4698604	33104735	Lundtoft C	2020-10-26	PLoS Genet	Function of multiple sclerosis-protective HLA class I alleles revealed by genome-wide protein-quantitative trait loci mapping of interferon signalling.	interferon-related traits	303 European ancestry individuals	NA	4p15.32	NR	rs4698604-G	0.06	8E-6	(IFNgamma_STAT1_of_CD20p)			Illumina [5084123] (imputed)	N
718	chr4	17526681	17526682	rs10020773	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein QDPR	5,366 Icelandic ancestry individuals	NA	4p15.32		rs10020773-C	0.266	1E-30		0.243998	[0.2-0.29] unit decrease	Illumina [7506463] (imputed)	N
718	chr4	17530632	17530633	rs146963227	32929287	Orru V	2020-09-14	Nat Genet	Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.	CD64 on CD14+ CD16+ monocyte	3,611 Sardinian (founder/genetic isolate) ancestry individuals	NA	4p15.32		rs146963227-A	0.01496	1E-8		0.5728	[0.38-0.77] unit decrease	Illumina [18210047] (imputed)	N
719	chr4	17635702	17635703	rs116230084	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.32		rs116230084-?	NR	6E-12				NR [~ 8900000] (imputed)	N
719	chr4	17661397	17661398	rs7671752	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Plateletcrit	408,112 British individuals	NA	4p15.32	FAM184B	rs7671752-T	0.588028	1E-9		0.013979226	[0.0095-0.0185] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr4	17665455	17665456	rs1476835	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Platelet count	408,112 British individuals	NA	4p15.32	FAM184B	rs1476835-T	0.588339	6E-12		0.015790047	[0.011-0.02] unit decrease	Affymetrix [93095623] (imputed)	N
719	chr4	17668503	17668504	rs917665	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	721,201 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.32	NR	rs917665-A	0.640324	3E-15				Affymetrix, Illumina [24588908] (imputed)	N
719	chr4	17668503	17668504	rs917665	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Platelet count	542,827 European ancestry individuals	NA	4p15.32	NR	rs917665-A	0.591887	2E-15		0.014915	[0.011-0.019] SD unit decrease	Affymetrix, Illumina [50241410] (imputed)	N
719	chr4	17682833	17682834	rs1008375	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	Parasitemia in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.32	NR	rs1008375-?	NR	9E-6				Affymetrix [5486770] (imputed)	N
720	chr4	17707448	17707449	rs61741460	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	FAM184B	rs61741460-T	NR	5E-11		0.042547	[0.03-0.055] unit decrease	Affymetrix [323123] (imputed)	N
720	chr4	17759310	17759311	rs2109045	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	FAM184B	rs2109045-A	0.059	7E-11		0.1009	[0.071-0.131] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
720	chr4	17759314	17759315	rs2109044	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	FAM184B	rs2109044-T	NR	4E-13		0.0451901	[0.033-0.057] unit decrease	Affymetrix [321016] (imputed)	N
720	chr4	17779294	17779295	rs34080918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	FAM184B	rs34080918-T	NR	2E-9		0.019858	[0.013-0.026] unit decrease	Affymetrix [321016] (imputed)	N
720	chr4	17779294	17779295	rs34080918	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	FAM184B	rs34080918-T	NR	3E-10		0.0226181	[0.016-0.03] unit decrease	Affymetrix [323123] (imputed)	N
720	chr4	17781208	17781209	rs16895707	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	FAM184B	rs16895707-T	0.2125	9E-7		0.0408	[0.025-0.057] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
720	chr4	17782704	17782705	rs35662238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	FAM184B	rs35662238-A	NR	3E-13		0.02428	[0.018-0.031] unit decrease	Affymetrix [321016] (imputed)	N
720	chr4	17782704	17782705	rs35662238	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	FAM184B	rs35662238-A	NR	2E-19		0.0325637	[0.025-0.04] unit decrease	Affymetrix [323123] (imputed)	N
720	chr4	17785322	17785322	rs770519005	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	FAM184B	rs770519005-T	NR	3E-21		0.0376743	[0.03-0.045] unit decrease	Affymetrix [321016] (imputed)	N
720	chr4	17792868	17792869	rs12640250	30297969	Mahajan A	2018-10-08	Nat Genet	Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps.	Type 2 diabetes	74,124 European ancestry cases, 824,006 European ancestry controls	NA	4p15.31	LCORL	rs12640250-C	0.7149	4E-8		1.04	[1.03-1.05]	Affymetrix, Illumina [~ 27000000] (imputed)	N
720	chr4	17792879	17792880	rs60258355	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	FAM184B-DCAF16	rs60258355-?	NR	1E-13		0.55	[0.41-0.69] unit decrease	Affymetrix [5682219] (imputed)	N
720	chr4	17797454	17797455	rs7672919	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	DCAF16	rs7672919-?	NR	8E-14		0.55	[0.41-0.69] unit decrease	Affymetrix [5682219] (imputed)	N
720	chr4	17797965	17797966	rs7678436	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs7678436-?	NR	1E-12		0.04421583	[0.032-0.056] unit decrease	Illumina [34656550] (imputed)	N
720	chr4	17797965	17797966	rs7678436	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4p15.31	FAM184B, C4orf30	rs7678436-A	0.33	2E-40		0.085	[0.071-0.099] unit decrease	Affymetrix, Illumina [2704730] (imputed)	N
720	chr4	17797965	17797966	rs7678436	20189936	Okada Y	2010-02-26	Hum Mol Genet	A genome-wide association study in 19 633 Japanese subjects identified LHX3-QSOX2 and IGF1 as adult height loci.	Height	19,633 Japanese ancestry individuals	NA	4p15.31	LCORL, NCAPG	rs7678436-A	0.26	8E-15		0.09	[0.07-0.11] cm decrease	Illumina [420885]	N
720	chr4	17798333	17798334	rs7679066	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	DCAF16	rs7679066-G	NR	2E-14		0.0258639	[0.019-0.033] unit increase	Affymetrix [323123] (imputed)	N
720	chr4	17811606	17811607	rs7683818	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.31	NCAPG	rs7683818-?	NR	6E-6	(TAG 56:4)	1.0002836	[0.57-1.43] unit decrease	Affymetrix [at least 2500000] (imputed)	N
720	chr4	17812614	17812615	rs2074974	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	NCAPG	rs2074974-A	NR	1E-11		0.0212457	[0.015-0.027] unit increase	Affymetrix [321016] (imputed)	N
720	chr4	17812795	17812796	rs16895792	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	NCAPG-DCAF16	rs16895792-?	NR	2E-12		0.67	[0.47-0.87] unit decrease	Affymetrix [5682219] (imputed)	N
720	chr4	17813710	17813711	rs1395371	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	DCAF16-NCAPG	rs1395371-?	NR	9E-12		0.46	[0.32-0.6] unit increase	Affymetrix [5682219] (imputed)	N
720	chr4	17815888	17815889	rs16895802	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs16895802-?	NR	1E-9		0.08585916	[0.058-0.113] unit decrease	Illumina [34656550] (imputed)	N
720	chr4	17815888	17815889	rs16895802	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4p15.31	NCAPG	rs16895802-C	0.88	2E-40		0.103	[0.087-0.119] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
720	chr4	17821030	17821030	rs570256832	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein B levels	340,860 European ancestry individuals, 5,962 African ancestry individuals, 7,275 South Asian ancestry individuals	NA		NR	rs570256832-AT	NR	4E-9		0.021	[0.014-0.028] unit increase	Affymetrix [9000000] (imputed)	N
720	chr4	17823901	17823902	rs11932971	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p15.31	NR	rs11932971-T	NR	5E-13		7.213	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
721	chr4	17827766	17827767	rs4698210	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	NCAPG	rs4698210-?	NR	7E-12		0.47	[0.33-0.61] unit increase	Affymetrix [5682219] (imputed)	N
721	chr4	17848099	17848100	rs17526078	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte percentage of red cells	408,112 British individuals	NA	4p15.31	LCORL	rs17526078-T	0.064088	2E-10		0.028820952	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
721	chr4	17849854	17849854	rs150128961	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4p15.31		rs150128961-TA	NR	1E-8		0.0214	[0.014-0.029] unit increase	Affymetrix, Illumina [20528270] (imputed)	N
721	chr4	17851507	17851508	rs113474791	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4p15.31		rs113474791-?	NR	8E-11				NR [7857346] (imputed)	N
721	chr4	17853920	17853921	rs16895888	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4p15.31	NR	rs16895888-G	0.11332	2E-10		0.06277703	[0.043-0.082] unit increase	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
721	chr4	17853920	17853921	rs16895888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.31	Intergenic	rs16895888-A	0.1511	1E-9	(MTAG)	0.0195	[0.013-0.026] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
721	chr4	17853920	17853921	rs16895888	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4p15.31	Intergenic	rs16895888-A	0.1511	2E-10		0.0254	[0.018-0.033] unit decrease	Affymetrix, Illumina [10100000] (imputed)	N
721	chr4	17854054	17854055	rs6842303	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1.5 years old	6,800 Norwegian ancestry individuals	3,780 Norwegian ancestry individuals	4p15.31	LCORL	rs6842303-T	0.27934	8E-9		0.089	[0.06-0.118] unit increase	Illumina [~ 8500000] (imputed)	N
721	chr4	17854054	17854055	rs6842303	31575865	Helgeland O	2019-10-01	Nat Commun	Genome-wide association study reveals dynamic role of genetic variation in infant and early childhood growth.	BMI at 1 year old	6,970 Norwegian ancestry individuals	3,839 Norwegian ancestry individuals	4p15.31	LCORL	rs6842303-T	0.27934	2E-8		0.086	[0.057-0.115] unit increase	Illumina [~ 8500000] (imputed)	N
721	chr4	17857252	17857253	rs75878186	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.31	NR	rs75878186-?	NR	3E-6		4.655	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
721	chr4	17859465	17859466	rs79334166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p15.31	C4orf30, LCORL, NCAPG	rs79334166-G	0.134847	4E-9		0.01884	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
721	chr4	17859465	17859466	rs79334166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (trunk fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p15.31	C4orf30, LCORL, NCAPG	rs79334166-G	0.134847	1E-12	(females)	0.02702	NR unit decrease (replication)	Affymetrix [25472837] (imputed)	N
721	chr4	17859465	17859466	rs79334166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p15.31	C4orf30, LCORL, NCAPG	rs79334166-G	0.134847	7E-8		0.01722	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
721	chr4	17859465	17859466	rs79334166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (leg fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p15.31	C4orf30, LCORL, NCAPG	rs79334166-G	0.134847	3E-6	(females)	0.01467	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
721	chr4	17859465	17859466	rs79334166	30664634	Rask-Andersen M	2019-01-21	Nat Commun	Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.	Body fat distribution (arm fat ratio)	55,006 British ancestry males, 61,132 British ancestry females	112,425 British ancestry males, 133,936 British ancestry females	4p15.31	C4orf30, LCORL, NCAPG	rs79334166-G	0.134847	7E-12	(females)	0.03475	NR unit increase (replication)	Affymetrix [25472837] (imputed)	N
721	chr4	17860355	17860355	rs764726148	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	High light scatter reticulocyte count	408,112 British individuals	NA	4p15.31	LCORL	rs764726148-AAAT	0.066518	3E-10		0.028367706	[0.02-0.037] unit increase	Affymetrix [93095623] (imputed)	N
721	chr4	17864013	17864014	rs58854324	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	White blood cell count	350,470 European ancestry individuals, 154,355 East Asian ancestry individuals	NA	4p15.31		rs58854324-C	NR	4E-9		0.0148	[0.0099-0.0197] unit increase	Affymetrix, Illumina [20538670] (imputed)	N
721	chr4	17864013	17864014	rs58854324	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4p15.31		rs58854324-?	NR	1E-10				NR [~ 8900000] (imputed)	N
721	chr4	17864273	17864274	rs113476736	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	LCORL	rs113476736-C	NR	9E-22		0.0434642	[0.035-0.052] unit decrease	Affymetrix [323123] (imputed)	N
721	chr4	17864613	17864613	rs137867485	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Platelet count	350,474 European ancestry individuals, 148,623 East Asian ancestry individuals	NA	4p15.31		rs137867485-TATAAC	NR	2E-14		0.0186	[0.014-0.023] unit increase	Affymetrix, Illumina [20538505] (imputed)	N
721	chr4	17865863	17865864	rs185373991	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4p15.31	LCORL	rs185373991-A	0.117	3E-8		1.86	[1.50-2.32]	Illumina [7959153] (imputed)	N
721	chr4	17866865	17866866	rs57654001	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs57654001-T	0.0594	5E-8		0.4394	[0.28-0.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
721	chr4	17868057	17868058	rs6817306	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Lymphocyte counts	349,856 European ancestry individuals, 95,717 East Asian ancestry individuals	NA	4p15.31		rs6817306-C	NR	1E-14		0.0246	[0.018-0.031] unit increase	Affymetrix, Illumina [20531022] (imputed)	N
721	chr4	17872706	17872707	rs13144223	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4p15.31		rs13144223-C	NR	2E-10		0.0193	[0.013-0.025] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
721	chr4	17874154	17874155	rs74759170	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs74759170-T	NR	1E-15		0.0456662	[0.035-0.057] unit decrease	Affymetrix [321016] (imputed)	N
721	chr4	17875735	17875738	rs78581007	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4p15.31	LCORL	rs78581007-T	0.2643	7E-6		0.0328	[0.018-0.047] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
721	chr4	17877486	17877487	rs13131350	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4p15.31		rs13131350-G	NR	2E-9		0.0151	[0.01-0.02] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
721	chr4	17877486	17877487	rs13131350	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs13131350-?	NR	1E-17		0.06736749	[0.052-0.083] unit decrease	Illumina [34656550] (imputed)	N
721	chr4	17877486	17877487	rs13131350	25429064	He M	2014-11-26	Hum Mol Genet	Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.	Height	36,227 East Asian ancestry individuals	57,699 East Asian ancestry individuals	4p15.31	LCORL	rs13131350-A	0.74	1E-53		0.095	[0.081-0.109] unit increase	Affymetrix, Illumina [2704730] (imputed)	N
721	chr4	17880390	17880391	rs75198716	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p15.31	LCORL	rs75198716-?	NR	7E-11		0.124470994	[0.087-0.162] unit decrease	Illumina [27896057] (imputed)	N
721	chr4	17880415	17880416	rs7700107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4p15.31		rs7700107-C	NR	2E-17		0.0233	[0.018-0.029] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
721	chr4	17880415	17880416	rs7700107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p15.31		rs7700107-C	NR	2E-262		0.0585	[0.055-0.062] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
721	chr4	17880415	17880416	rs7700107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Gamma glutamyl transpeptidase	344,104 European ancestry individuals, 133,471 East Asian ancestry individuals	NA	4p15.31		rs7700107-C	NR	7E-12		0.0174	[0.012-0.022] unit increase	Affymetrix, Illumina [20535691] (imputed)	N
721	chr4	17880415	17880416	rs7700107	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Alanine aminotransferase levels	344,136 European ancestry individuals, 150,545 East Asian ancestry individuals	NA	4p15.31		rs7700107-C	NR	6E-11		0.0165	[0.012-0.021] unit increase	Affymetrix, Illumina [20538387] (imputed)	N
721	chr4	17880415	17880416	rs7700107	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Alanine aminotransferase levels	390,812 European ancestry individuals	134,154 East Asian ancestry individuals	4p15.31	LCORL	rs7700107-C	0.14	3E-9		5.96	z-score increase	Affymetrix [4312306] (imputed)	N
721	chr4	17880415	17880416	rs7700107	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p15.31	LCORL	rs7700107-?	NR	2E-152		0.088558994	[0.082-0.095] unit decrease	Illumina [27896057] (imputed)	N
721	chr4	17880471	17880472	rs79640067	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p15.31	LCORL	rs79640067-?	NR	1E-14		0.07198284	[0.054-0.09] unit decrease	Illumina [27896057] (imputed)	N
721	chr4	17884985	17884986	rs16895971	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	165,056 East Asian ancestry individuals	NA	4p15.31		rs16895971-C	0.240868	5E-119		0.0553172	[0.051-0.06] unit decrease	Illumina [13479295] (imputed)	N
721	chr4	17901053	17901054	rs34916030	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p15.31		rs34916030-?	NR	1E-10				NR [~ 8900000] (imputed)	N
721	chr4	17901678	17901679	rs979532	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	LCORL	rs979532-C	NR	2E-21		0.0332828	[0.026-0.04] unit increase	Affymetrix [323123] (imputed)	N
721	chr4	17901678	17901679	rs979532	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p15.31		rs979532-?	NR	4E-12				NR [~ 8900000] (imputed)	N
721	chr4	17903653	17903654	rs4144829	34128465	Liu Y	2021-06-15	Elife	Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.	Lung volume	32,860 European ancestry individuals	NA	4p15.31	NCAPG	rs4144829-?	NR	1E-9		0.0466	NR L decrease	Affymetrix [9390170] (imputed)	N
721	chr4	17903653	17903654	rs4144829	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4p15.31	LCORL	rs4144829-C	NR	3E-9		0.0208529	[0.014-0.028] unit increase	Affymetrix [321114] (imputed)	N
721	chr4	17903653	17903654	rs4144829	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Birth weight	298,142 European ancestry individuals, 6,635 African American individuals, 1,449 Filipino individuals, 420 Turkish individuals, 365 Moroccan individuals, 395 Surinamese individuals, 1,052 Afro-Caribbean individuals, 612 Hispanic individuals, 1,180 Thai individuals, 840 Chinese ancestry individuals, 10,133 individuals	NR	4p15.31	LCORL, DCAF16	rs4144829-C	0.267008	4E-34		0.035507	[0.03-0.041] unit increase	Affymetrix, Illumina [15144367] (imputed)	N
721	chr4	17908311	17908311	rs542058258	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4p15.31		rs542058258-CT	NR	4E-8		0.0188	[0.012-0.025] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
721	chr4	17908311	17908311	rs542058258	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs542058258-CT	NR	2E-18		0.0355728	[0.028-0.044] unit decrease	Affymetrix [321016] (imputed)	N
721	chr4	17910235	17910236	rs1472852	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p15.31	LCORL	rs1472852-A	0.1582	8E-135		0.0638	[0.059-0.069] unit decrease	Affymetrix [18391927] (imputed)	N
721	chr4	17910235	17910236	rs1472852	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	85,750 European ancestry middle-aged adult individuals	NA	4p15.31	NR	rs1472852-A	0.158362	4E-13		0.0962807	[0.07-0.122] unit decrease	Affymetrix [21375087] (imputed)	N
721	chr4	17914256	17914257	rs112570672	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	LCORL, KRT18P63	rs112570672-A	NR	3E-16		0.0613289	[0.047-0.076] unit decrease	Affymetrix [323123] (imputed)	N
721	chr4	17917780	17917781	rs2174633	31043758	Warrington NM	2019-05-01	Nat Genet	Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors.	Offspring birth weight	210,267 European ancestry individuals, 19,802 individuals	NR	4p15.31	LCORL, DCAF16	rs2174633-A	0.267868	4E-12		0.023908	[0.017-0.031] unit increase	Affymetrix, Illumina [14869762] (imputed)	N
721	chr4	17917780	17917781	rs2174633	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p15.31	LCORL	rs2174633-A	0.265235	5E-13		0.0151388	[0.011-0.019] unit decrease	NR [13737936] (imputed)	N
721	chr4	17917780	17917781	rs2174633	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.31		rs2174633-?	NR	2E-18				NR [~ 8900000] (imputed)	N
721	chr4	17917780	17917781	rs2174633	30048462	Kim SK	2018-07-26	PLoS One	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.	Heel bone mineral density	394,929 European ancestry individuals	NA	4p15.31		rs2174633-?	NR	2E-12		0.0162694	[0.012-0.021] unit decrease	Affymetrix [20259828] (imputed)	N
721	chr4	17919065	17919066	rs12645584	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	188,507 European ancestry women	NA	4p15.31	NR	rs12645584-T	0.731368	4E-9		0.0169337	[0.011-0.023] unit increase	Affymetrix [16585745] (imputed)	N
721	chr4	17919810	17919811	rs925098	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	4p15.31	LCORL	rs925098-G	0.35	3E-13	(AA)	0.05	[0.036-0.064] unit increase	Affymetrix, Illumina [17972582] (imputed)	N
721	chr4	17919810	17919811	rs925098	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	41,389 African ancestry individuals	11,364 African ancestry individuals, 253,288 European ancestry individuals	4p15.31	LCORL	rs925098-G		2E-59				Affymetrix, Illumina [17972582] (imputed)	N
721	chr4	17919810	17919811	rs925098	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	25,369 African ancestry women	8,449 African ancestry women, up to 253,288 European ancestry women	4p15.31	LCORL	rs925098-G	0.351	6E-8	(AA)	0.046	[0.028-0.064] unit increase	Affymetrix, Illumina [19885954] (imputed)	N
721	chr4	17919810	17919811	rs925098	33713608	Graff M	2021-03-05	Am J Hum Genet	Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry.	Height	16,021 African ancestry men	2,915 African ancestry men, up to 253,288 European ancestry men	4p15.31	LCORL	rs925098-G	0.347	1E-7	(AA)	0.059	[0.037-0.081] unit increase	Affymetrix, Illumina [16055004] (imputed)	N
721	chr4	17919810	17919811	rs925098	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p15.31	NR	rs925098-G	0.264724	3E-9		0.00884987	[0.0061-0.0116] unit increase	Affymetrix [16585854] (imputed)	N
721	chr4	17919810	17919811	rs925098	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p15.31	NR	rs925098-G	0.264724	8E-9		0.00980966	[0.0067-0.013] unit increase	Affymetrix [16585866] (imputed)	N
721	chr4	17919810	17919811	rs925098	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs925098-?	NR	2E-23		0.05842065	[0.047-0.07] unit decrease	Illumina [34656550] (imputed)	N
721	chr4	17919810	17919811	rs925098	27680694	Horikoshi M	2016-10-13	Nature	Genome-wide associations for birth weight and correlations with adult disease.	Birth weight	133,903 European ancestry individuals, 6,635 African American individuals, 420 Turkish ancestry individuals, 365 Moroccan ancestry individuals, 395 Surinamese ancestry individuals, 840 Chinese ancestry individuals.	9,799 European ancestry individuals, 1,449 Filipino ancestry individuals.	4p15.31	LCORL	rs925098-G	0.28	1E-15		0.0322	[0.024-0.04] unit increase	Affymetrix, Illumina [at least 22434434] (imputed)	N
721	chr4	17919810	17919811	rs925098	22021425	Carty CL	2011-10-21	Hum Mol Genet	Genome-wide association study of body height in African Americans: the Women's Health Initiative SNP Health Association Resource (SHARe).	Height	8,149 African American female individuals	Up to 20,809 African American and African ancestry individuals	4p15.31	LCORL	rs925098-G	0.35	3E-14		0.056	[0.036-0.076] unit increase	Affymetrix [855034]	N
721	chr4	17922813	17922813	rs548236486	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4p15.31	NR	rs548236486-?		2E-11		0.0216082	[0.015-0.028] unit decrease	Affymetrix [19400418] (imputed)	N
721	chr4	17924733	17924734	rs11938781	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p15.31	LCORL	rs11938781-T	0.834629	6E-9		0.0149535	[0.0099-0.02] unit increase	Affymetrix [NR] (imputed)	N
721	chr4	17927815	17927816	rs114719848	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	LCORL	rs114719848-T	NR	2E-9		0.0572566	[0.039-0.076] unit decrease	Affymetrix [323123] (imputed)	N
721	chr4	17932318	17932319	rs73802707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4p15.31	LCORL	rs73802707-T	NR	6E-13		0.0309986	[0.023-0.039] unit decrease	Affymetrix [321114] (imputed)	N
721	chr4	17932318	17932319	rs73802707	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4p15.31	NR	rs73802707-T	0.153889	2E-12		0.0660756	[0.048-0.085] unit decrease	Affymetrix [17914406] (imputed)	N
721	chr4	17936633	17936634	rs7692995	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs7692995-?	NR	2E-13		0.04952954	[0.036-0.063] unit decrease	Illumina [34656550] (imputed)	N
721	chr4	17936633	17936634	rs7692995	25282103	Wood AR	2014-10-05	Nat Genet	Defining the role of common variation in the genomic and biological architecture of adult human height.	Height	253,288 European ancestry individuals	80,067 European ancestry individuals	4p15.31	LCORL	rs7692995-T	0.848	1E-71		0.074	[0.066-0.082] unit increase	Affymetrix, Illumina, Perlegen [2550858] (imputed)	N
721	chr4	17940039	17940040	rs868195621	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	LCORL	rs868195621-?	NR	3E-15		0.56	[0.42-0.7] unit decrease	Affymetrix [5682219] (imputed)	N
721	chr4	17942559	17942560	rs2707450	31562340	Akiyama M	2019-09-27	Nat Commun	Characterizing rare and low-frequency height-associated variants in the Japanese population.	Height	159,095 Japanese ancestry individuals	32,692 Japanese ancestry individuals	4p15.31	LCORL	rs2707450-?	NR	5E-19		0.03034151	[0.024-0.037] unit decrease	Illumina [27896057] (imputed)	N
721	chr4	17942559	17942560	rs2707450	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p15.31	LCORL	rs2707450-T	0.7357	2E-12		0.2125	[0.15-0.27] mmHg increase	Affymetrix [NR] (imputed)	N
721	chr4	17944839	17944840	rs16896068	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs16896068-?	NR	6E-14		0.04977833	[0.037-0.063] unit decrease	Illumina [34656550] (imputed)	N
721	chr4	17944839	17944840	rs16896068	18391952	Weedon MN	2008-04-06	Nat Genet	Genome-wide association analysis identifies 20 loci that influence adult height.	Height	13,665 European ancestry individuals	16,482 European ancestry individuals	4p15.31	LCORL	rs16896068-A	0.16	2E-13		0.07	[0.03-0.11] s.d. decrease (males)	Affymetrix [402951]	N
721	chr4	17946431	17946432	rs2724475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p15.31	NR	rs2724475-T	0.261619	5E-14		0.00727298	[0.0054-0.0091] unit increase	Affymetrix [16582909] (imputed)	N
721	chr4	17946431	17946432	rs2724475	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p15.31	NR	rs2724475-T	0.261619	5E-13		0.00765908	[0.0056-0.0097] unit increase	Affymetrix [16582965] (imputed)	N
721	chr4	17946431	17946432	rs2724475	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs2724475-?	NR	2E-26		0.06298559	[0.051-0.075] unit decrease	Illumina [34656550] (imputed)	N
721	chr4	17946431	17946432	rs2724475	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p15.31	LCORL	rs2724475-?	NR	2E-9	(Conditioned on rs6449353)		[NR]	Affymetrix, Illumina [2834208] (imputed)	N
721	chr4	17952207	17952208	rs6845078	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p15.31	LCORL	rs6845078-T	0.1497	9E-12	(EA)	0.0345	[0.025-0.044] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
721	chr4	17952207	17952208	rs6845078	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Hip circumference adjusted for BMI	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p15.31	LCORL	rs6845078-T	0.1497	1E-10	(EA,men)	0.0473	[0.033-0.062] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
721	chr4	17952207	17952208	rs6845078	23563607	Berndt SI	2013-04-07	Nat Genet	Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.	Height	8,097 European ancestry tall individuals, 8,099 European ancestry short individuals	4,872 European ancestry tall individuals, 4,831 European ancestry short individuals	4p15.31	LCORL	rs6845078-C	0.85	3E-22		1.38	[NR]	Affymetrix, Illumina [~ 2800000] (imputed)	N
721	chr4	17956213	17956214	rs34067272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.31		rs34067272-T	NR	3E-42		0.0242	[0.021-0.028] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
721	chr4	17956213	17956214	rs34067272	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	165,419 East Asian ancestry individuals	NA	4p15.31		rs34067272-T	0.508573	8E-25		0.0278903	[0.023-0.033] unit decrease	Illumina [13479924] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in smokers	19,276 European ancestry women, 16,408 European ancestry men, 973 European ancestry individuals, 1,701 African American/Afro-Caribbean ancestry women, 903 African American/Afro-Caribbean ancestry men, 10 Indian Asian ancestry women, 957 Indian Asian ancestry men, 267 Filipino ancestry women, 475 Hispanic/Latino ancestry women, 446 Hispanic/Latino ancestry men	5,485 European ancestry women, 6,471 European ancestry men, 13,416 European ancestry individuals, 253 African American/Afro-Caribbean ancestry women, 208 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	9E-6		0.0449	[0.025-0.065] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	6E-6		0.0232	[0.013-0.033] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI in non-smokers	77,113 European ancestry women, 47,319 European ancestry men, 4,856 European ancestry individuals, 8,799 African American/Afro-Caribbean ancestry women, 1,803 African American/Afro-Caribbean ancestry men, 1,020 Indian Asian ancestry women, 6,691 Indian Asian ancestry men, 1,526 Filipino ancestry women, 2,469 Hispanic/Latino ancestry women, 1,318 Hispanic/Latino ancestry men	16,011 European ancestry women, 17,912 European ancestry men, 105,218 European ancestry individuals, 2,073 African American/Afro-Caribbean ancestry women, 647 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	3E-6	(men)	0.0372	[0.022-0.053] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	7E-8	(men)			Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	2E-9				Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	9E-9		0.0266	[0.018-0.036] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	28443625	Justice AE	2017-04-26	Nat Commun	Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits.	Waist circumference adjusted for BMI (adjusted for smoking behaviour)	97,400 European ancestry women, 63,892 European ancestry men, 5,829 European ancestry individuals, 10,500 African American/Afro-Caribbean ancestry women, 2,706 African American/Afro-Caribbean ancestry men, 1,030 Indian Asian ancestry women, 7,648 Indian Asian ancestry men, 1,793 Filipino ancestry women, 2,944 Hispanic/Latino ancestry women, 1,764 Hispanic/Latino ancestry men	21,496 European ancestry women, 24,385 European ancestry men, 118,364 European ancestry individuals, 2,326 African American/Afro-Caribbean ancestry women, 855 African American/Afro-Caribbean ancestry men	4p15.31	LCORL	rs7684221-A	0.1931	5E-8	(men)	0.0374	[0.024-0.051] unit decrease	Affymetrix, Illumina, Perlegen [up to 2800000] (imputed)	N
722	chr4	17957353	17957354	rs7684221	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p15.31	LCORL	rs7684221-A	0.1641	4E-8	(EA)	0.0259	[0.017-0.035] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
722	chr4	17957353	17957354	rs7684221	25673412	Shungin D	2015-02-12	Nature	New genetic loci link adipose and insulin biology to body fat distribution.	Waist circumference adjusted for body mass index	up to 56,910 European ancestry men, up to 86,570 European ancestry women	up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African American/Afro-Caribbean ancestry men, 6,258 African American/Afro-Caribbean ancestry women, 2,285 South Asian ancestry men, 506 South Asian ancestry women, 195 Seychellois ancestry men, 266 Seychellois ancestry women	4p15.31	LCORL	rs7684221-A	0.1641	3E-7	(EA, men)	0.0341	[0.021-0.047] unit decrease	Affymetrix, Illumina, Perlegen [up to 2542447] (imputed)	N
722	chr4	17957687	17957688	rs7673321	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	186,825 British ancestry men	NA	4p15.31	LCORL	rs7673321-A	NR	4E-32		0.0496043	[0.041-0.058] unit decrease	Affymetrix [323123] (imputed)	N
722	chr4	17957687	17957688	rs7673321	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.31	NR	rs7673321-?	NR	1E-18				Affymetrix [~ 8270000] (imputed)	N
722	chr4	17965264	17965265	rs34710064	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs34710064-A	0.162	8E-28		0.0962	[0.079-0.113] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	17968810	17968811	rs34025766	31701892	Nalls MA	2019-12-01	Lancet Neurol	Identification of novel risk loci, causal insights, and heritable risk for Parkinson's disease: a meta-analysis of genome-wide association studies.	Parkinson's disease or first degree relation to individual with Parkinson's disease	15,056 European ancestry cases, 18,618 European ancestry proxy cases, 449,056 European ancestry controls	22,632 European ancestry cases, 968,735 European ancestry controls	4p15.31	LCORL	rs34025766-A	0.1589	3E-10		0.0839	[0.058-0.11] unit decrease	NR [7784415] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.9815	2E-13	(MTAG)	0.0491	[0.036-0.062] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.9815	4E-10		0.0454	[0.031-0.06] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.9815	4E-16	(MTAG)	0.0498	[0.038-0.062] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.9815	1E-9		0.0514	[0.035-0.068] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.31		rs114192810-T	0.9801	3E-8		0.0279	[0.018-0.038] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.9801	7E-12	(MTAG)	0.0323	[0.023-0.042] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
722	chr4	17969141	17969142	rs114192810	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.31	Intergenic	rs114192810-T	0.979	7E-10	(MTAG)	0.0492	[0.034-0.065] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
722	chr4	17972371	17972372	rs2320299	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Systolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p15.31		rs2320299-A	0.7286	9E-21		0.23758857	[0.19-0.29] mmHg increase	Affymetrix, Illumina [242865] (imputed)	N
722	chr4	17972371	17972372	rs2320299	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Pulse pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p15.31		rs2320299-A	0.7285	8E-14		0.13426682	[0.099-0.169] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
722	chr4	17972371	17972372	rs2320299	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Hypertension	810,865 European ancestry individuals	354,096 European ancestry individuals	4p15.31		rs2320299-A	0.7265	1E-13		7.44408	z score increase	Affymetrix, Illumina [239843] (imputed)	N
722	chr4	17972371	17972372	rs2320299	33230300	Surendran P	2020-11-23	Nat Genet	Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.	Diastolic blood pressure	810,865 European ancestry individuals	354,096 European ancestry individuals	4p15.31		rs2320299-A	0.7285	6E-11		0.10497084	[0.074-0.136] mmHg increase	Affymetrix, Illumina [242866] (imputed)	N
722	chr4	17974218	17974219	rs13144767	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.31	LCORL	rs13144767-G	NR	4E-8		0.023071	[0.015-0.031] unit decrease	Affymetrix [321114] (imputed)	N
722	chr4	17991521	17991522	rs35852935	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.31	LCORL	rs35852935-A	0.964436	5E-9		0.0218858	[0.015-0.029] unit decrease	Affymetrix [12370749]	N
722	chr4	17991521	17991522	rs35852935	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs35852935-?	NR	5E-9				Affymetrix [~ 8270000] (imputed)	N
722	chr4	17991521	17991522	rs35852935	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs35852935-A	0.9603	5E-6		0.0834	[0.048-0.119] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	17993409	17993410	rs724577	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth weight (MTAG)	up to 182,902 European ancestry individuals	NA	4p15.31	NR	rs724577-A	0.27	7E-17		0.03502898	[0.027-0.043] unit increase	NR [1977400] (imputed)	N
722	chr4	17993409	17993410	rs724577	31681408	Yang XL	2019-10-11	Front Genet	Three Novel Loci for Infant Head Circumference Identified by a Joint Association Analysis.	Birth length (MTAG)	up to 182,902 European ancestry individuals	NA	4p15.31	NR	rs724577-A	0.358	4E-16		0.049361188	[0.037-0.061] unit increase	NR [1977400] (imputed)	N
722	chr4	17993409	17993410	rs724577	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs724577-?	NR	3E-26		0.06290052	[0.051-0.075] unit decrease	Illumina [34656550] (imputed)	N
722	chr4	17993409	17993410	rs724577	23202124	Horikoshi M	2012-12-02	Nat Genet	New loci associated with birth weight identify genetic links between intrauterine             growth and adult height and metabolism.	Birth weight	Up to 26,836 European ancestry individuals	Up to 42,519 European ancestry individuals	4p15.31	LCORL	rs724577-C	0.73	5E-11		0.042	[0.030-0.054] gram decrease	Affymetrix, Illumina [~ 2700000] (imputed)	N
722	chr4	17993409	17993410	rs724577	21998595	N'Diaye A	2011-10-06	PLoS Genet	Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.	Height	20,427 African ancestry individuals	Up to 16,436 African American individuals	4p15.31	LCORL	rs724577-A	0.31	1E-15		0.067	[0.051-0.083] unit increase	Affymetrix, Illumina [3310998] (imputed)	N
722	chr4	17994297	17994298	rs35362908	28270201	Nagy R	2017-03-07	Genome Med	Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants.	Height	19,965 British ancestry individuals from 6863 families.	NA	4p15.31	LCORL	rs35362908-C	0.1006	7E-9		0.007578552	[0.005-0.0101] m decrease	Illumina [24111857] (imputed)	N
722	chr4	17997065	17997066	rs6824748	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.31		rs6824748-?	NR	2E-268				NR [~ 8900000] (imputed)	N
722	chr4	17997065	17997066	rs6824748	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.31	NR	rs6824748-?	NR	6E-17	(male)	0.39691	[0.3-0.49] unit decrease	Affymetrix [7794483] (imputed)	N
722	chr4	17997065	17997066	rs6824748	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.31	NR	rs6824748-?	NR	6E-14	(female)	0.24762	[0.18-0.31] unit decrease	Affymetrix [7794483] (imputed)	N
722	chr4	17997065	17997066	rs6824748	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Fat-free mass	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.31	NR	rs6824748-?	NR	5E-28		0.33008	[0.27-0.39] unit decrease	Affymetrix [7794483] (imputed)	N
722	chr4	17998425	17998426	rs2061456	31097437	Plotnikov D	2019-05-16	Br J Ophthalmol	Association between birth weight and refractive error in adulthood: a Mendelian randomisation study.	Birth weight	188,039 European ancestry individuals	NA	4p15.31	NR	rs2061456-A	0.25	4E-25		0.038	[0.03-0.046] z score increase	Affymetrix [up to 10400000] (imputed)	N
722	chr4	17998425	17998426	rs2061456	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs2061456-A	0.261	1E-19		0.0656	[0.051-0.08] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	18002228	18002230	rs66679433	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Reticulocyte fraction of red cells	408,112 British individuals	NA	4p15.31	LCORL	rs66679433-A	0.136219	4E-9		0.01929543	[0.013-0.026] unit increase	Affymetrix [93095623] (imputed)	N
722	chr4	18004754	18004755	rs16896239	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.31	NR	rs16896239-G	0.01394	9E-10	(FERMT2)	0.09005	NR unit increase	Illumina [1671387] (imputed)	N
722	chr4	18005122	18005123	rs74536181	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.31		rs74536181-?	NR	1E-9				NR [~ 8900000] (imputed)	N
722	chr4	18006088	18006089	rs6850306	29860282	Scelsi MA	2018-05-30	Brain	Genetic study of multimodal imaging Alzheimer's disease progression score implicates novel loci.	Alzheimer's disease progression score	944 European ancestry individuals	NA	4p15.31	LCORL	rs6850306-?		1E-8	(corrected for APOE4 status and baseline cortical amyloid)	0.07	[NR] unit decrease	Illumina [5137218] (imputed)	N
722	chr4	18008231	18008232	rs2610990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs2610990-A	NR	2E-19		0.0287976	[0.023-0.035] unit increase	Affymetrix [321016] (imputed)	N
722	chr4	18008231	18008232	rs2610990	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Systolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p15.31	LCORL	rs2610990-A	0.2607	4E-20		0.2573	[0.2-0.31] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
722	chr4	18011860	18011860	rs775116244	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs775116244-T	NR	6E-29		0.0459365	[0.038-0.054] unit decrease	Affymetrix [321016] (imputed)	N
722	chr4	18012034	18012035	rs71603396	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial squamous cell lung carcinoma	367 European ancestry cases, 31,563 European ancestry controls	NA	4p15.31	LCORL	rs71603396-A	0.139	2E-9		1.92	[1.55-2.37]	Illumina [7959153] (imputed)	N
722	chr4	18015155	18015156	rs16896276	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	35,422 individuals (>=25 years old)	NA	4p15.31		rs16896276-A	NR	9E-9		0.0143	[0.0096-0.019] mm increase	Affymetrix, Illumina [8936601] (imputed)	N
722	chr4	18015155	18015156	rs16896276	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals, 14,462 Asian ancestry individuals	88,218 European ancestry individuals	4p15.31		rs16896276-A	0.26	1E-31		0.013	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
722	chr4	18015155	18015156	rs16896276	32193507	Fan Q	2020-03-19	Commun Biol	Genome-wide association meta-analysis of corneal curvature identifies novel loci and shared genetic influences across axial length and refractive error.	Corneal curvature	29,580 European ancestry individuals	NA	4p15.31		rs16896276-A	0.27	1E-7		0.014	mm increase	Affymetrix, Illumina [8936601] (imputed)	N
722	chr4	18015155	18015156	rs16896276	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.31	NR	rs16896276-?	NR	9E-20				Affymetrix [~ 8270000] (imputed)	N
722	chr4	18017729	18017730	rs6830062	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs6830062-?	NR	5E-13		0.04806628	[0.035-0.061] unit decrease	Illumina [34656550] (imputed)	N
722	chr4	18017729	18017730	rs6830062	20397748	Liu JZ	2010-04-01	Twin Res Hum Genet	Genome-wide association study of height and body mass index in Australian twin families.	Height	11,536 European ancestry individuals	NA	4p15.31	LC0RL	rs6830062-T	0.84	8E-6		0.09	[0.04-0.14] SD increase	Illumina [559712] (imputed)	N
722	chr4	18017729	18017730	rs6830062	19343178	Soranzo N	2009-04-03	PLoS Genet	Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.	Height	12,611 European ancestry individuals	7,187 European ancestry individuals	4p15.31	LCORL	rs6830062-?	0.23	5E-9		0.1	[0.07-0.13] s.d. increase	Illumina [229216]	N
722	chr4	18017729	18017730	rs6830062	18391951	Gudbjartsson DF	2008-04-06	Nat Genet	Many sequence variants affecting diversity of adult human height.	Height	30,968 European ancestry individuals	8,541 European ancestry individuals	4p15.31	LCORL, NCAPG	rs6830062-T	0.89	1E-10		6.3	[4.34-8.26] % s.d. increase	Affymetrix, Illumina [up to 304226]	N
722	chr4	18023431	18023444	rs199792401	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs199792401-G	0.0319	6E-6		0.0874	[0.049-0.125] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	18024120	18024121	rs1380294	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Infant length	28,238 European ancestry individuals	NA	4p15.31	LCORL	rs1380294-T	0.15	3E-14		0.108	[0.081-0.135] unit decrease	Affymetrix, Illumina [2193675] (imputed)	N
722	chr4	18025483	18025484	rs2011603	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p15.31	NR	rs2011603-G	0.2752	2E-13		0.0383	[0.028-0.048] unit decrease	Affymetrix, Illumina [1198787] (imputed)	N
722	chr4	18025483	18025484	rs2011603	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p15.31	intergenic	rs2011603-A	0.7256	2E-11		0.1432	[0.1-0.18] mmHg increase	Affymetrix [NR] (imputed)	N
722	chr4	18025483	18025484	rs2011603	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.31		rs2011603-A	0.7359	1E-8		0.0091	[0.006-0.0122] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
722	chr4	18025728	18025732	rs112967514	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist circumference adjusted for body mass index	1,247 whole genome sequenced European ancestry individuals, 3,050 whole genome sequenced individuals, 41,027 European ancestry individuals, 397 Carlantino (founder/genetic isolate) individuals, 790 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,005 Mylopotamos (founder/genetic isolate) individuals, 875 Pomak (founder/genetic isolate) individuals, 1,754 Val Borbera (founder/genetic isolate) individuals	206,723 European ancestry individuals	4p15.31	LCORL	rs112967514-T	0.1714	8E-6		0.0407	[0.023-0.059] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	18027695	18027696	rs112675878	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4p15.31	intergenic	rs112675878-?	NR	3E-10		0.0241	[0.017-0.031] unit increase	Affymetrix [5701386] (imputed)	N
722	chr4	18033487	18033488	rs6449353	31761296	Hernandez Cordero AI	2019-11-21	Am J Hum Genet	Genome-wide Associations Reveal Human-Mouse Genetic Convergence and Modifiers of Myogenesis, CPNE1 and STC2.	Appendicular lean mass	181,862 European ancestry elderly individuals	NA	4p15.31	NR	rs6449353-C	0.159923	2E-11		0.0613348	[0.043-0.079] unit decrease	Affymetrix [17914406] (imputed)	N
722	chr4	18033487	18033488	rs6449353	31217584	Wojcik GL	2019-06-19	Nature	Genetic analyses of diverse populations improves discovery for complex traits.	Height	17,286 African American individuals, 22,192 Hispanic/Latino individuals, 4,680 Asian ancestry individuals, 3,939 Native Hawaiian ancestry individuals, 647 Native American ancestry individuals, 1,052 individuals	NA	4p15.31	NR	rs6449353-?	NR	7E-13		0.0476276	[0.035-0.061] unit decrease	Illumina [34656550] (imputed)	N
722	chr4	18033487	18033488	rs6449353	25281659	van der Valk RJ	2014-10-03	Hum Mol Genet	A novel common variant in DCST2 is associated with length in early life and height in adulthood.	Birth length	28,459 European ancestry individuals	16,145 European ancestry individuals, 280 Moroccan ancestry individuals, 284 Surinamese ancestry individuals, 319 Turkish ancestry individuals, 651 Chinese ancestry individuals	4p15.31	LCORL	rs6449353-T	0.141	1E-6		0.065	[0.040-0.090] unit increase	Affymetrix, Illumina [2201971] (imputed)	N
722	chr4	18033487	18033488	rs6449353	20881960	Lango Allen H	2010-09-29	Nature	Hundreds of variants clustered in genomic loci and biological pathways affect human height.	Height	133,653 European ancestry individuals	50,074 European ancestry individuals	4p15.31	LCORL	rs6449353-T	0.85	7E-46		0.075	[NR] unit increase	Affymetrix, Illumina [2834208] (imputed)	N
722	chr4	18034462	18034463	rs71603401	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p15.31	LCORL	rs71603401-A	0.863197	2E-19		0.0263983	[0.021-0.032] unit decrease	Affymetrix [NR] (imputed)	N
722	chr4	18036792	18036793	rs78286014	34270706	Lin E	2021-07-16	Hum Mol Genet	Genome-wide association study in the Taiwan biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.	Height	14,571 Taiwanese Han Chinese ancestry individuals	20,506 Taiwanese Han Chinese ancestry individuals	4p15.31	LCORL-LOC107986262	rs78286014-?	NR	1E-9		0.55	[0.37-0.73] unit decrease	Affymetrix [5682219] (imputed)	N
722	chr4	18039262	18039263	rs6837198	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p15.31		rs6837198-T	NR	2E-11		0.0143	[0.01-0.018] unit increase	Affymetrix, Illumina [20525742] (imputed)	N
722	chr4	18043116	18043117	rs12643629	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs12643629-A	NR	4E-10		0.0183682	[0.013-0.024] unit increase	Affymetrix [321016] (imputed)	N
722	chr4	18044356	18044357	rs2169033	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p15.31	NR	rs2169033-C	0.34	1E-15		0.0325	[0.024-0.041] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
722	chr4	18046961	18046962	rs112829745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs112829745-T	0.0158	3E-6		0.1374	[0.08-0.195] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
722	chr4	18049215	18049216	rs75631642	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs75631642-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
722	chr4	18051022	18051023	rs2707454	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs2707454-T	NR	4E-9		0.0193395	[0.013-0.026] unit increase	Affymetrix [321016] (imputed)	N
723	chr4	18111536	18111537	rs6812794	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs6812794-T	NR	4E-10		0.027821	[0.019-0.037] unit decrease	Affymetrix [321016] (imputed)	N
723	chr4	18111536	18111537	rs6812794	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	LCORL	rs6812794-A	0.8827	6E-7		0.0544	[0.033-0.076] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
723	chr4	18118036	18118037	rs2125653	34162658	Quinn MC	2021-06-23	Cancer Epidemiol Biomarkers Prev	Identification of a locus near ULK1 associated with progression-free survival in ovarian cancer.	Progression free survival in epithelial ovarian cancer	5,596 European ancestry individuals	NA	4p15.31	NR	rs2125653-A		8E-7		0.1445	[0.087-0.202] unit increase	Illumina [12770451] (imputed)	N
723	chr4	18128640	18128641	rs1503874	23942779	McGue M	2013-08-14	Behav Genet	A genome-wide association study of behavioral disinhibition.	Illicit drug use	7,188 European ancestry individuals	NA	4p15.31	NR	rs1503874-A	0.372	4E-6		8.981	[NR] unit decrease	Illumina [527829]	N
723	chr4	18172770	18172771	rs62411644	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4p15.31		rs62411644-G	NR	4E-9		0.0279	[0.019-0.037] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
723	chr4	18184679	18184680	rs76161249	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip circumference adjusted for BMI	219,872 British ancestry women	NA	4p15.31	LCORL	rs76161249-G	NR	6E-10		0.0364254	[0.025-0.048] unit decrease	Affymetrix [321016] (imputed)	N
723	chr4	18185076	18185077	rs9968377	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p15.31	LCORL	rs9968377-?		4E-9				Affymetrix, Illumina [NR] (imputed)	N
723	chr4	18194173	18194174	rs17523800	32339537	Roberts V	2020-04-24	J Invest Dermatol	Genome wide association study identifies genetic associations with perceived age.	Youthful appearance (self-reported)	423,992 European ancestry individuals	NA	4p15.31	LCORL	rs17523800-T	0.634448	2E-8		0.9749315	NR	Affymetrix [~ 9600000] (imputed)	N
723	chr4	18205101	18205102	rs6840504	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Glycated hemoglobin levels	327,177 European ancestry individuals, 4,847 African ancestry individuals, 6,895 South Asian ancestry individuals	NA	4p15.31	NR	rs6840504-T	NR	4E-13		0.0178	[0.013-0.023] unit increase	Affymetrix [9000000] (imputed)	N
723	chr4	18209554	18209554	rs397955689	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Glucose levels	314,916 European ancestry individuals, 133,336 East Asian ancestry individuals	NA	4p15.31		rs397955689-GT	NR	2E-8		0.0118	[0.0077-0.0159] unit increase	Affymetrix, Illumina [20535873] (imputed)	N
724	chr4	18250905	18250906	rs1394088	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.31		rs1394088-?	NR	4E-12				NR [~ 8900000] (imputed)	N
724	chr4	18260775	18260776	rs4698678	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4p15.31	LCORL	rs4698678-C	0.2786	1E-11		1.0311761		Affymetrix [11880941] (imputed)	N
724	chr4	18293143	18293144	rs13147572	28696415	Maciukiewicz M	2017-07-11	Pharmacogenomics J	Genome-wide association studies of placebo and duloxetine response in major depressive disorder.	Duloxetine response in major depressive disorder (% change in symptom score)	186 European ancestry individuals	NA	4p15.31	ATP8A1	rs13147572-?		8E-6		0.44	[NR] unit decrease	Illumina [1924595] (imputed)	N
724	chr4	18293421	18293422	rs12648063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p15.31		rs12648063-?	NR	2E-9				NR [~ 8900000] (imputed)	N
724	chr4	18327895	18327896	rs2192528	30846698	Dashti HS	2019-03-07	Nat Commun	Genome-wide association study identifies genetic loci for self-reported habitual sleep duration supported by accelerometer-derived estimates.	Sleep duration	446,118 European ancestry individuals	47,180  adults, 10,554 children or adolescents	4p15.31	NR	rs2192528-A	NR	1E-7		0.666	unit increase	Affymetrix [14661600] (imputed)	N
724	chr4	18327895	18327896	rs2192528	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Sleep duration	384,317 European ancestry individuals	NA	4p15.31		rs2192528-A	0.4772	6E-10		0.01516	[0.01-0.02] unit increase	Affymetrix, Illumina [10862567] (imputed)	N
724	chr4	18329823	18329824	rs2192527	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Metabolic biomarkers (multivariate analysis)	389,354 European ancestry individuals	NA	4p15.31		rs2192527-G	0.46	4E-17				NR [NR] (imputed)	N
724	chr4	18329823	18329824	rs2192527	33980691	Martin S	2021-05-12	Diabetes	Genetic evidence for different adiposity phenotypes and their opposing influence on ectopic fat and risk of cardiometabolic disease.	Body fat percentage	442,278 European ancestry individuals	NA	4p15.31		rs2192527-G	0.46	4E-21		0.014	% increase	NR [NR] (imputed)	N
724	chr4	18329823	18329824	rs2192527	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.31	NR	rs2192527-?	NR	7E-11		0.13815	[0.097-0.18] unit increase	Affymetrix [7794483] (imputed)	N
724	chr4	18329823	18329824	rs2192527	30593698	Hubel C	2018-12-28	Am J Med Genet B Neuropsychiatr Genet	Genomics of body fat percentage may contribute to sex bias in anorexia nervosa.	Body fat percentage	70,700 European ancestry female individuals, 85,261 European ancestry male individuals	NA	4p15.31	NR	rs2192527-?	NR	1E-6	(male)	0.12556	[0.075-0.177] unit increase	Affymetrix [7794483] (imputed)	N
725	chr4	18351897	18351898	rs66679256	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4p15.31	NR	rs66679256-T	0.4461	1E-13		0.018498896	[0.014-0.023] unit increase	Affymetrix [10549349] (imputed)	N
725	chr4	18351897	18351898	rs66679256	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.31	LCORL	rs66679256-T	0.448	3E-9		0.0071	[0.0047-0.0095] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
725	chr4	18351897	18351898	rs66679256	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4p15.31	LCORL	rs66679256-T	0.4461	9E-9		0.002	[0.0014-0.0026] unit decrease	Affymetrix [15275733] (imputed)	N
725	chr4	18472550	18472551	rs10022433	34732054	Yang Y	2021-11-04	Circ Genom Precis Med	Identification of Functional Genetic Determinants of Cardiac Troponin T and I in a Multiethnic Population and Causal Associations With Atrial Fibrillation.	High-sensitivity cardiac troponin I concentration	1,606 African American individuals	NA	4p15.31		rs10022433-?	NR	9E-6		0.2	[0.11-0.29] unit increase	Affymetrix, Illumina [NR] (imputed)	N
726	chr4	18484741	18484742	rs6840517	31900758	Han X	2020-01-03	Eur J Epidemiol	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.	C-reactive protein levels	418,642 British ancestry individuals	NA	4p15.31	NR	rs6840517-A	0.438013	8E-10		0.0121107	[0.0082-0.016] unit decrease	NR [NR]	N
726	chr4	18498841	18498842	rs34430935	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.31		rs34430935-A	NR	1E-12		0.0146	[0.011-0.019] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
726	chr4	18511737	18511738	rs1477890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	C-reactive protein	353,466 European ancestry individuals, 83,025 East Asian ancestry individuals	NA	4p15.31		rs1477890-G	NR	2E-10		0.0137	[0.0096-0.0178] unit increase	Affymetrix, Illumina [20529698] (imputed)	N
726	chr4	18511737	18511738	rs1477890	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.31	LCORL	rs1477890-A	0.50706	1E-12		0.00977959	[0.0071-0.0125] unit decrease	Affymetrix [12370749]	N
726	chr4	18511737	18511738	rs1477890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs1477890-?	NR	5E-15				Affymetrix [~ 8270000] (imputed)	N
726	chr4	18511737	18511738	rs1477890	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.31		rs1477890-?	NR	6E-15				NR [~ 8900000] (imputed)	N
726	chr4	18511737	18511738	rs1477890	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.31	NA	rs1477890-A	0.4875	6E-14		0.0128	[0.0095-0.0161] unit decrease	NR [~ 27400000] (imputed)	N
726	chr4	18514826	18514827	rs1477887	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4p15.31	NA	rs1477887-A	0.4432	9E-13		0.0122	[0.0089-0.0155] unit decrease	NR [~ 27400000] (imputed)	N
726	chr4	18569314	18569315	rs192193151	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.31	RP11-608B3.1	rs192193151-T	0.0086	8E-6		0.1799	[0.1-0.26] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
727	chr4	18618536	18618537	rs144033868	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 19)	2,187 European ancestry individuals	NA	4p15.31	NR	rs144033868-C	0.006881	2E-7		0.9317	[0.58-1.28] unit decrease	Illumina [10677593] (imputed)	N
727	chr4	18619166	18619167	rs116439690	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4p15.31	LCORL	rs116439690-A	0.0289708509958239	3E-6		0.0075124	[NR] unit decrease	Affymetrix [> 30000000] (imputed)	N
727	chr4	18742543	18742544	rs182892587	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Waist-hip ratio	1,254 whole genome sequenced European ancestry individuals, 3,071 whole genome sequenced individuals, 29,723 European ancestry individuals, 388 Carlantino (founder/genetic isolate) individuals, 791 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,053 Mylopotamos (founder/genetic isolate) individuals, 879 Pomak (founder/genetic isolate) individuals	206,053 European ancestry individuals	4p15.31	RP11-608B3.1	rs182892587-A	0.0017	9E-6		0.8611	[0.48-1.24] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
728	chr4	18778871	18778872	rs73234116	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs73234116-?	NR	2E-8				Affymetrix [~ 8270000] (imputed)	N
728	chr4	18795225	18795226	rs1850549	31209788	Li HQ	2019-06-18	Neurotox Res	Genome-Wide Association Study of Cerebral Microbleeds on MRI.	Cerebral microbleeds	176 European ancestry cases, 278 European ancestry controls	NA	4p15.31	LOC105374510	rs1850549-T	0.17	2E-6		2.56		Illumina [983392]	N
728	chr4	18795329	18795330	rs4147045	24743840	Figueiredo JC	2014-04-17	PLoS Genet	Genome-wide diet-gene interaction analyses for risk of colorectal cancer.	Colorectal cancer (diet interaction)	9,287 European ancestry cases, 9,117 European ancestry controls	NA	4p15.31	LCORL, RPL21P46	rs4147045-?	0.08-0.12	1E-6	(Vegetable)	1.2	[1.11-1.3]	Affymetrix, Illumina [> 2700000] (imputed)	N
728	chr4	18866168	18866169	rs6845621	24025145	Chung S	2013-09-11	Breast Cancer Res	A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.	Adverse response to chemotherapy in breast cancer (alopecia) (cyclophosphamide+doxorubicin+/-5FU)	64 Japanese ancestry cases, 27 Japanese ancestry controls	NA	4p15.31	LCORL	rs6845621-C	0.20	2E-6	(Allelic)	5.53	[2.61-11.7]	Illumina [555600]	N
729	chr4	18909731	18909732	rs78517437	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in hypertension	816 Korean ancestry cases, 15,488 Korean ancestry controls	NA	4p15.31		rs78517437-A	0.1363	4E-6		0.6711	[0.5663-0.7952]	Affymetrix [7975321] (imputed)	N
729	chr4	18909731	18909732	rs78517437	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Coronary artery disease in dyslipidemia	768 Korean ancestry cases, 19,999 Korean ancestry controls	NA	4p15.31		rs78517437-A	0.1363	4E-6		0.6656	[0.5596-0.7918]	Affymetrix [7975321] (imputed)	N
730	chr4	19014093	19014094	rs969162	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Shingles	16,711 European ancestry cases, 118,152 European ancestry controls	NA	4p15.31	NR	rs969162-?	NR	9E-6		0.0548	[0.031-0.079] unit increase	Illumina [at least 560000] (imputed)	N
730	chr4	19038082	19038083	rs73234189	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs73234189-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
730	chr4	19047616	19047617	rs16898029	26644207	Clarelli F	2015-12-08	Pharmacogenomics J	Pharmacogenetic study of long-term response to interferon-? treatment in multiple sclerosis.	Response to interferon beta in multiple sclerosis	166 European ancestry responder cases, 171 European ancestry non-responder cases	NA	4p15.31	intergenic	rs16898029-?	0.8798	2E-6		4.69	[NR]	Illumina [1387466] (imputed)	N
730	chr4	19053758	19053759	rs207338	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4p15.31	ENSG00000248238	rs207338-?	NR	5E-8		0.01078371	[0.0069-0.0147] unit decrease	NR [7306098]	N
730	chr4	19056474	19056475	rs16898037	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.31	Intergenic	rs16898037-A	0.2612	4E-9	(MTAG)	0.0088	[0.0059-0.0117] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
730	chr4	19073684	19073685	rs12508031	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 230)	19,670 European ancestry individuals	NA	4p15.31		rs12508031-?	NR	4E-10				NR [9705931] (imputed)	N
730	chr4	19087519	19087520	rs182289	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p15.31		rs182289-G	0.16	1E-10		6.45	z score increase	Affymetrix [9061022] (imputed)	N
730	chr4	19087519	19087520	rs182289	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p15.31	NR	rs182289-G	0.1517	7E-14				NR [9056863] (imputed)	N
730	chr4	19094358	19094359	rs112199	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs112199-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
730	chr4	19095651	19095652	rs13115025	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	8,072 individuals	NA	4p15.31		rs13115025-A	0.06	2E-6				NR [13131314] (imputed)	N
730	chr4	19095651	19095652	rs13115025	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p15.31		rs13115025-A	0.06	4E-16		8.15	z score increase	Affymetrix [9061022] (imputed)	N
730	chr4	19095651	19095652	rs13115025	32193296	Grasby KL	2020-03-01	Science	The genetic architecture of the human cerebral cortex.	Cortical surface area	33,992 European ancestry individuals	14,727 European ancestry individuals, 2,943 individuals	4p15.31	NR	rs13115025-A	0.0606	2E-10	(Pericalcarine)	14.984688	[10.39-19.58] unit increase	Affymetrix, Illumina [NR]	N
730	chr4	19096262	19096263	rs207299	29691431	Tikkanen E	2018-04-24	Sci Rep	Biological Insights Into Muscular Strength: Genetic Findings in the UK Biobank.	Hand grip strength	334,825 British ancestry individuals	NA	4p15.31	LCORL	rs207299-T	0.2738	1E-8		0.002	[0.0014-0.0026] unit increase	Affymetrix [15275733] (imputed)	N
730	chr4	19108883	19108884	rs207282	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p15.31	NR	rs207282-T	NR	3E-6		1.05	[NR]	Illumina [7158791] (imputed)	N
730	chr4	19108939	19108940	rs207281	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota presence (genus Enterorhabdus id.820)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p15.31		rs207281-A	NR	4E-8		5.513081	z score increase	Affymetrix, Illumina [NR] (imputed)	N
731	chr4	19240824	19240825	rs75607637	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p15.31	NR	rs75607637-?	NR	3E-8				Illumina [7760689] (imputed)	N
732	chr4	19277147	19277148	rs13101508	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p15.31	Intergenic	rs13101508-T	0.6706	1E-12		0.0148	[0.011-0.019] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
732	chr4	19300505	19300505	rs767462343	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4p15.31	intergenic	rs767462343-GTTTAAT	0.669257	1E-11		0.0148405	[0.01-0.019] unit increase	NR [16516521] (imputed)	N
732	chr4	19339779	19339780	rs35177116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.31	Intergenic	rs35177116-T	0.2774	5E-15	(MTAG)	0.0157	[0.012-0.02] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
732	chr4	19339779	19339780	rs35177116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.31	Intergenic	rs35177116-T	0.2773	8E-14	(MTAG)	0.0138	[0.01-0.017] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
732	chr4	19339779	19339780	rs35177116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.31	Intergenic	rs35177116-T	0.275	9E-9	(MTAG)	0.0084	[0.0055-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
732	chr4	19339779	19339780	rs35177116	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.31	Intergenic	rs35177116-T	0.2752	5E-10	(MTAG)	0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
732	chr4	19362992	19362993	rs62296447	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p15.31	NR	rs62296447-T	NR	6E-6		1.0752687	[NR]	Illumina [7158791] (imputed)	N
733	chr4	19513130	19513131	rs10009128	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.31	NR	rs10009128-?	NR	6E-12				Affymetrix [NR]	N
734	chr4	19533789	19533790	rs10026163	32002517	Julienne H	2020-01-24	NAR Genom Bioinform	JASS: command line and web interface for the joint analysis of GWAS results.	Insulin-related traits (multivariate analysis)	62,205 individuals	NA	4p15.31	LINC02438	rs10026163-?	NR	3E-10				NR [3144808] (imputed)	N
736	chr4	19878807	19878808	rs113050717	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.31	NR	rs113050717-T	0.0122	2E-8	(LRRK2)	0.04966	NR unit increase	Illumina [1671387] (imputed)	N
737	chr4	19988468	19988469	rs4411990	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Insular cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.31	NR	rs4411990-?		5E-6				Illumina [4322238] (imputed)	N
737	chr4	20020239	20020240	rs2629715	24847101	Rudkowska I	2014-05-19	J Lipid Res	Genome-wide association study of the plasma triglyceride response to an n-3 polyunsaturated fatty acid supplementation.	Response to long-chain n-3 polyunsaturated fatty acid supplementation (change in triglyceride levels)	81 responder individuals, 60 non-responder individuals	NA	4p15.31	SLIT2	rs2629715-?	0.52	4E-7		4.0		Illumina [2668805]	N
738	chr4	20099137	20099138	rs9985922	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4p15.31	NR	rs9985922-C	0.1275	1E-10		0.023862617	[0.017-0.031] unit increase	Affymetrix [10549349] (imputed)	N
738	chr4	20120862	20120863	rs1485554	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs1485554-?	NR	2E-15				Affymetrix [~ 8270000] (imputed)	N
738	chr4	20120862	20120863	rs1485554	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.31		rs1485554-?	NR	3E-16				NR [~ 8900000] (imputed)	N
738	chr4	20121120	20121121	rs13150272	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p15.31		rs13150272-A	0.27	4E-31		11.61	z score increase	Affymetrix [9061022] (imputed)	N
738	chr4	20121120	20121121	rs13150272	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p15.31		rs13150272-A	0.27	1E-17		8.54	z score increase	Affymetrix [9061022] (imputed)	N
738	chr4	20121120	20121121	rs13150272	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p15.31		rs13150272-A	0.27	2E-20		9.27	z score increase	Affymetrix [9061022] (imputed)	N
738	chr4	20121120	20121121	rs13150272	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p15.31	NR	rs13150272-A	0.2752	1E-15				NR [9056863] (imputed)	N
738	chr4	20121120	20121121	rs13150272	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p15.31	NR	rs13150272-A	0.2752	1E-17				NR [9056863] (imputed)	N
738	chr4	20121120	20121121	rs13150272	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 117)	19,670 European ancestry individuals	NA	4p15.31		rs13150272-?	NR	5E-19				NR [9705931] (imputed)	N
738	chr4	20121120	20121121	rs13150272	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Brain morphology (MOSTest)	26,502 European ancestry individuals	NA	4p15.31	NR	rs13150272-?		8E-15				NR [7428630] (imputed)	N
738	chr4	20124825	20124826	rs544200874	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.31	SLIT2	rs544200874-C	0.91859	7E-11		0.0176783	[0.012-0.023] unit decrease	Affymetrix [12370749]	N
738	chr4	20137636	20137637	rs13130457	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.31	NR	rs13130457-?	NR	6E-12				Affymetrix [NR]	N
738	chr4	20168390	20168391	rs1436294	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colonoscopy-negative controls vs population controls	855 Austrian ancestry colonoscopy-negative controls, 3,439 European ancestry controls	NA	4p15.31	Intergenic	rs1436294-?	NR	6E-7		1.3974288	[NR]	Affymetrix [492217] (imputed)	N
738	chr4	20183936	20183937	rs1344852	27659466	van der Harst P	2016-09-27	J Am Coll Cardiol	52 Genetic Loci Influencing Myocardial Mass.	QRS duration	59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals	13,263 European ancestry individuals, 3,603 African American individuals, 4,619 Indian ancestry individuals	4p15.31	SLIT2	rs1344852-?	NR	1E-9	(EA)	0.47	[0.31-0.63] unit decrease	Affymetrix, Illumina, Perlegen [at least 2766983] (imputed)	N
739	chr4	20210952	20210953	rs11940813	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 965,732 European ancestry controls	NA	4p15.31	NR	rs11940813-G	0.137	3E-8		0.0371	[0.024-0.05] unit increase	Affymetrix, Illumina [1198787] (imputed)	N
739	chr4	20213425	20213426	rs139800775	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.31		rs139800775-T	0.856	4E-9		0.011	[0.0071-0.0149] unit decrease	NR [NR] (imputed)	N
739	chr4	20213427	20213428	rs149806890	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.31		rs149806890-A	NR	2E-10		0.0232	[0.016-0.03] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
739	chr4	20213780	20213781	rs10016841	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index variance	346,393 European ancestry individuals	NA	4p15.31	SLIT2	rs10016841-?	NR	2E-9				NR [5554549] (imputed)	N
739	chr4	20213780	20213781	rs10016841	31453325	Wang H	2019-08-14	Sci Adv	Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank.	Body mass index	346,393 European ancestry individuals	NA	4p15.31	SLIT2	rs10016841-?	NR	2E-13				NR [5554549] (imputed)	N
739	chr4	20219594	20219595	rs73249175	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.31	NA	rs73249175-T	0.8754	2E-14		0.0221	[0.016-0.028] unit decrease	NR [~ 27400000] (imputed)	N
739	chr4	20239662	20239663	rs28608644	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4p15.31	NA	rs28608644-A	0.8535	1E-12		0.0192	[0.014-0.024] unit decrease	NR [~ 27400000] (imputed)	N
739	chr4	20260027	20260028	rs2322459	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.31		rs2322459-G	NR	4E-11		0.012	[0.0085-0.0155] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
739	chr4	20260037	20260038	rs2874800	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.31	NR	rs2874800-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
739	chr4	20265534	20265535	rs7664347	32541925	Vujkovic M	2020-06-15	Nat Genet	Discovery of 318 new risk loci for type 2 diabetes and related vascular outcomes among 1.4 million participants in a multi-ancestry meta-analysis.	Type 2 diabetes	148,726 European ancestry cases, 24,646 African American cases, 8,616 Hispanic cases, 46,511 Asian ancestry cases, 965,732 European ancestry controls, 31,446 African American controls, 11,829 Hispanic controls, 169,776 Asian ancestry controls	NA	4p15.31	NR	rs7664347-C	0.6601	1E-8		0.0234	[0.015-0.031] unit decrease	Affymetrix, Illumina [at least 945603] (imputed)	N
739	chr4	20276251	20276252	rs6447952	31712607	Nudel R	2019-11-11	Transl Psychiatry	A large-scale genomic investigation of susceptibility to infection and its association with mental disorders in the Danish population.	Hospital contact for infections	21,728 Danish ancestry cases with psychiatric disorders, 6,744 Danish ancestry cases, 24,161 Danish ancestry controls with psychiatric disorders, 12,901 Danish ancestry controls	NA	4p15.31		rs6447952-G	NR	3E-7		1.0647359	[1.04-1.09]	Illumina [11600722] (imputed)	N
739	chr4	20288318	20288319	rs12642349	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Rheumatic fever	1,115 European ancestry cases, 88,076 European ancestry controls	NA	4p15.31	NR	rs12642349-?	NR	2E-7		0.3453	[0.21-0.48] unit increase	Illumina [at least 560000] (imputed)	N
739	chr4	20297579	20297580	rs12233914	34838041	Naderi E	2021-11-27	J Transl Med	A two-stage genome-wide association study of radiation-induced acute toxicity in head and neck cancer.	radiation-induced toxicity (physician-rated acute sticky saliva)	859 Dutch ancestry individuals	246 Dutch ancestry individuals	4p15.31		rs12233914-G	NR	4E-6		0.0948832	[0.054-0.136] decrease	Illumina [6334277] (imputed)	N
739	chr4	20302100	20302101	rs138511433	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.31	NR	rs138511433-C	0.04181	1E-8	(HIST1H1C)	0.0166	NR unit increase	Illumina [1671387] (imputed)	N
740	chr4	20330999	20331000	rs116461311	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Spontaneous preterm birth (preterm birth)	247 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	4p15.31		rs116461311-?	NR	2E-6		3.43	[2.01-5.86]	Illumina [6778521] (imputed)	N
740	chr4	20330999	20331000	rs116461311	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Gestational age at birth (child effect)	666 Finnish ancestry infants	NA	4p15.31	SLIT2	rs116461311-C	NR	3E-7		3.75	unit decrease	Illumina [6778521] (imputed)	N
740	chr4	20330999	20331000	rs116461311	31194736	Tiensuu H	2019-06-13	PLoS Genet	Risk of spontaneous preterm birth and fetal growth associates with fetal SLIT2.	Early spontaneous preterm birth	172 Finnish ancestry infant cases, 419 Finnish ancestry infant controls	NA	4p15.31	SLIT2	rs116461311-?	NR	2E-7		4.06		Illumina [6778521] (imputed)	N
740	chr4	20446189	20446190	rs11933090	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.31	NR	rs11933090-G	0.103	1E-9		0.0108	[0.0073-0.0143] unit increase	NR [9732723] (imputed)	N
741	chr4	20487710	20487711	rs10019416	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels x Mediterranean diet adherence interaction	954 European ancestry high cardiovascular risk elderly individuals	NA	4p15.31	SLIT2	rs10019416-A	0.258	7E-6			[NR]	Illumina [625127]	N
741	chr4	20495134	20495135	rs666088	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	4p15.31	SLIT2	rs666088-?	NR	5E-6	(LVDD)			Affymetrix [70897]	N
741	chr4	20527863	20527864	rs7690660	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Pars orbitalis volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.31	SLIT2	rs7690660-?		4E-6				Illumina [4322238] (imputed)	N
742	chr4	20620682	20620683	rs1379659	17903301	Vasan RS	2007-09-19	BMC Med Genet	Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.	Echocardiographic traits	Up to 1,238 European ancestry individuals	NA	4p15.31	SLIT2	rs1379659-?	NR	1E-7	(LVDD)			Affymetrix [70897]	N
742	chr4	20647571	20647572	rs57802047	29545352	Li Y	2018-03-15	J Am Soc Nephrol	Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.	Serum metabolite concentrations in chronic kidney disease	1,143 European ancestry cases	NA	4p15.31	SLIT2, PACRGL	rs57802047-T	NR	9E-10	(Phosphatidylcholine with acyl-alkyl residue sum C38:0)	0.490673	[0.34-0.65] unit increase	Illumina [up to 9281895] (imputed)	N
742	chr4	20655170	20655171	rs141153844	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	4p15.31	NR	rs141153844-?		2E-6		27.5742	[16.29-38.86] unit decrease	NR [NR] (imputed)	N
743	chr4	20722811	20722812	rs7696218	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.31	NR	rs7696218-?		3E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
743	chr4	20732333	20732334	rs7688805	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.31	NR	rs7688805-?		4E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
743	chr4	20780314	20780315	rs16869961	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 855 Austrian ancestry controls	NA	4p15.31	Intergenic	rs16869961-?		1E-6		1.4186409	[NR]	Affymetrix [492217] (imputed)	N
743	chr4	20780314	20780315	rs16869961	29228715	Hofer P	2017-10-09	Oncotarget	Bayesian and frequentist analysis of an Austrian genome-wide association study of colorectal cancer and advanced adenomas.	Colorectal cancer	978 Austrian ancestry cases, 4,294 European ancestry controls	NA	4p15.31	KCNIP4	rs16869961-?		2E-6		1.3287271	[NR]	Affymetrix [492217] (imputed)	N
744	chr4	20859725	20859726	rs188380356	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p15.31	NR	rs188380356-?	NR	2E-8				Illumina [7760689] (imputed)	N
744	chr4	20861513	20861514	rs17556698	33817668	Curtis SW	2021-04-01	HGG Adv	The PAX1 locus at 20p11 is a potential genetic modifier for bilateral cleft lip.	Bilateral cleft lip and palate	121 Asian ancestry cases, 159 European ancestry cases, 285 Hispanic cases, 1 case, 161 Asian ancestry controls, 835 European ancestry controls, 626 Hispanic controls, 4 controls	NA	4p15.31	NR	rs17556698-?	NR	6E-6		1.22	[1.14-1.31]	Illumina [539000] (imputed)	N
744	chr4	20875038	20875039	rs4235287	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4p15.31	NR	rs4235287-C		8E-6		0.4159	[0.24-0.59] SD units decrease	NR [10700000] (imputed)	N
744	chr4	20945825	20945826	rs1347385	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Lingual gyrus volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.31	KCNIP4	rs1347385-?		1E-6				Illumina [4322238] (imputed)	N
745	chr4	20991382	20991383	rs147627531	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Aspartate aminotransferase levels in excessive alcohol consumption	951 individuals	NA	4p15.31	NR	rs147627531-?	NR	6E-7		0.0484	[0.029-0.067] unit decrease	Illumina [~ 7800000] (imputed)	N
745	chr4	21008081	21008082	rs62293769	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p15.31		rs62293769-C	NR	5E-8		0.0123	[0.0078-0.0168] unit decrease	Affymetrix, Illumina [20538915] (imputed)	N
745	chr4	21060220	21060221	rs6826348	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.31	NR	rs6826348-?	NR	2E-9				Affymetrix [NR]	N
746	chr4	21113870	21113871	rs6846038	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.31	C4orf28	rs6846038-?	NR	5E-6	(histidine)	0.18352754	[0.1-0.26] unit increase	Affymetrix [at least 2500000] (imputed)	N
746	chr4	21127675	21127676	rs2874890	30177863	Maguire LH	2018-09-03	Nat Genet	Genome-wide association analyses identify 39 new susceptibility loci for diverticular disease.	Diverticular disease	27,444 British ancestry cases, 382,284 British ancestry controls	NA	4p15.31	KCNIP4	rs2874890-G	0.25934115707965	9E-7		0.0030048	[NR] unit increase	Affymetrix [> 30000000] (imputed)	N
746	chr4	21172704	21172705	rs145272881	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-13 levels	3,557 Finnish ancestry individuals	NA	4p15.31	NR	rs145272881-C		1E-6		0.6034	[0.36-0.85] SD units decrease	NR [10700000] (imputed)	N
746	chr4	21206489	21206490	rs1023721	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p15.31	NR	rs1023721-T	0.941491348153093	1E-6	(IGP45)	0.312	[0.19-0.44] unit increase	Illumina [~ 2500000] (imputed)	N
746	chr4	21206489	21206490	rs1023721	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p15.31	NR	rs1023721-T	0.941465292386465	1E-6	(IGP5)	0.3141	[0.19-0.44] unit increase	Illumina [~ 2500000] (imputed)	N
747	chr4	21245797	21245798	rs6858323	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.31	NR	rs6858323-?	NR	2E-15				Affymetrix [NR]	N
747	chr4	21293436	21293437	rs141863958	25663231	Beecham GW	2015-02-06	Neurology	PARK10 is a major locus for sporadic neuropathologically confirmed Parkinson disease.	Parkinson disease and lewy body pathology	484 European ancestry cases, 1,145 European ancestry controls	NA	4p15.31	KCNIP4	rs141863958-?	0.028	1E-6		3.32	[NR]	Illumina [3922209] (imputed)	N
747	chr4	21351649	21351650	rs144550967	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Measles	38,219 European ancestry cases, 47,279 European ancestry controls	NA	4p15.2	NR	rs144550967-?	NR	5E-6		0.3542	[0.2-0.51] unit increase	Illumina [at least 560000] (imputed)	N
747	chr4	21355527	21355528	rs148033637	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-1-receptor antagonist levels	3,638 Finnish ancestry individuals	NA	4p15.2	NR	rs148033637-C		3E-6		0.6558	[0.39-0.93] SD units increase	NR [10700000] (imputed)	N
748	chr4	21393615	21393616	rs1495509	26169577	Mosley JD	2015-07-14	Pharmacogenomics J	A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough.	Cough in response to angiotensin-converting enzyme inhibitor drugs	1,346 European ancestry ACE inhibitor-exposed cases, 178 African ancestry ACE inhibitor-exposed cases, 71 ACE inhibitor-exposed cases, 4,661 European ancestry ACE inhibitor-exposed controls, 701 African ancestry ACE inhibitor-exposed controls, 123 ACE inhibitor-exposed controls	867 European ancestry ACE inhibitor-exposed cases, 4,364 European ancestry ACE inhibitor-exposed controls	4p15.2	KCNIP4	rs1495509-C	NR	2E-9		1.23	[1.15-1.32]	Illumina [1931830] (imputed)	N
748	chr4	21455256	21455257	rs11942476	23382691	Lauc G	2013-01-31	PLoS Genet	Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.	IgG glycosylation	2,247 European ancestry individuals	NA	4p15.2	NR	rs11942476-C	0.855854377005348	6E-6	(IGP25)	0.2144	[0.12-0.31] unit decrease	Illumina [~ 2500000] (imputed)	N
748	chr4	21455876	21455877	rs1460485	30595539	Wallace HJ	2018-12-27	Burns	Genetic influence on scar height and pliability after burn injury in individuals of European ancestry: A prospective cohort study.	Postburn scar height	665 European ancestry individuals	NA	4p15.2	KCNIP4	rs1460485-A	0.4714	9E-6		0.2391	[0.13-0.34] unit decrease	Illumina [298150]	N
748	chr4	21476989	21476990	rs358592	20877300	Perroud N	2010-09-28	Pharmacogenomics J	Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project.	Suicidal ideation	706 European ancestry individuals	NA	4p15.2	KCNIP4	rs358592-?	0.70	3E-6	(Escitalopram)	2.56	[NR]	Illumina [539199]	N
749	chr4	21511382	21511383	rs16871289	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	KCNIP4	rs16871289-A	0.017	9E-6	(CRP )	0.03	[NR] ng/mL increase	Illumina [899892]	N
749	chr4	21571086	21571087	rs1604805	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	KCNIP4	rs1604805-G	0.058	9E-6	(NEFA )	0.02	[NR] mmol/L increase	Illumina [899892]	N
751	chr4	21785363	21785364	rs10019221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Neuroticism	approximately 372,000 European ancestry individuals	NA	4p15.2		rs10019221-?	NR	1E-7				NR [~ 8900000] (imputed)	N
751	chr4	21785363	21785364	rs10019221	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.2		rs10019221-?	NR	1E-8				NR [~ 8900000] (imputed)	N
751	chr4	21852766	21852767	rs60799144	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p15.2	KCNIP4	rs60799144-A	0.4001	1E-11		0.0132	[0.0095-0.0169] unit increase	Affymetrix [18391927] (imputed)	N
751	chr4	21855940	21855941	rs4697241	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Neuroticism	449,484 European ancestry individuals	NA	4p15.2	NR	rs4697241-A	NR	2E-8		5.583	z score decrease	Affymetrix [10847151] (imputed)	N
751	chr4	21860762	21860763	rs12498561	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Morning person	approximately 410,000 European ancestry individuals	NA	4p15.2		rs12498561-?	NR	8E-8				NR [~ 8900000] (imputed)	N
751	chr4	21883084	21883085	rs181995593	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p15.2	KCNIP4	rs181995593-C	0.998	4E-6	(AA)	0.224	unit increase	Illumina [NR] (imputed)	N
752	chr4	21913424	21913425	rs6820986	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.2	Intergenic	rs6820986-T	0.586	1E-9		0.014	[0.0095-0.0185] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
752	chr4	21919894	21919895	rs1949226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.2	Intergenic	rs1949226-A	0.5866	1E-9	(MTAG)	0.0111	[0.0076-0.0146] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
752	chr4	21919894	21919895	rs1949226	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.2	Intergenic	rs1949226-A	0.5863	2E-17	(MTAG)	0.0143	[0.011-0.018] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
752	chr4	21929393	21929394	rs1913329	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.2	Intergenic	rs1913329-A	0.5876	1E-9	(MTAG)	0.0142	[0.0097-0.0187] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
752	chr4	21931194	21931195	rs4697248	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs4697248-T	0.6664	3E-11	(conditional-joint)	0.0099	[0.007-0.0128] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
752	chr4	21938439	21938440	rs150198051	29559693	Zengini E	2018-03-20	Nat Genet	Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.	Osteoarthritis of the knee (hospital diagnosed)	4,462 European ancestry cases, 17,885 European ancestry controls	4,672 Icelandic ancestry cases, 172,791 Icelandic ancestry controls	4p15.2	NR	rs150198051-G	0.038193	6E-6		1.2022	[1.1102-1.3019]	Affymetrix [16309199] (imputed)	N
752	chr4	21945932	21945933	rs4467547	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs4467547-T	0.407	5E-17		0.0121	[0.0094-0.0148] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
752	chr4	21945932	21945933	rs4467547	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.2	Intergenic	rs4467547-T	0.407	4E-20	(MTAG)	0.0123	[0.0098-0.0148] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
753	chr4	22021499	22021500	rs16872248	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	UM9(5), KCNIP4-IT1	rs16872248-A	0.047	6E-6	(Fat mass )	0.03	[NR] % increase	Illumina [899892]	N
753	chr4	22028078	22028079	rs7679843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Total testosterone levels	194,453 European ancestry men	NA	4p15.2	NR	rs7679843-G	0.09466799999999997	1E-17		0.0433159	[0.033-0.054] unit increase	Affymetrix [16577313] (imputed)	N
753	chr4	22028078	22028079	rs7679843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	382,988 European ancestry individuals	NA	4p15.2	NR	rs7679843-G	0.09538599999999997	2E-11		0.0235565	[0.017-0.03] unit increase	Affymetrix [16583148] (imputed)	N
753	chr4	22028078	22028079	rs7679843	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Bioavailable testosterone levels	178,782 European ancestry men	NA	4p15.2	NR	rs7679843-G	0.09498200000000001	4E-22		0.0501614	[0.04-0.061] unit increase	Affymetrix [16577424] (imputed)	N
753	chr4	22050164	22050165	rs62301574	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Insomnia	651,923 European ancestry males, 679,087 European ancestry females	NA	4p15.2	NR	rs62301574-G	0.2004	1E-8		1.0427529	[1.03-1.06]	Affymetrix, Illumina [NR] (imputed)	N
753	chr4	22091383	22091384	rs6448119	21156761	Padyukov L	2010-12-14	Ann Rheum Dis	A genome-wide association study suggests contrasting associations in ACPA-positive versus ACPA-negative rheumatoid arthritis.	Rheumatoid arthritis	1,147 European ancestry ACPA positive RA cases, 774 European ancestry ACPA negative RA cases, 1,079 European ancestry controls	887 European ancestry ACPA positive RA cases, 1,218 European ancestry controls	4p15.2	KCNIP4, GPR125	rs6448119-?	NR	7E-6	(ACPA-positive RA vs ACPA-negative RA)			Illumina [1723056] (imputed)	N
754	chr4	22165254	22165255	rs9291437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.2	Intergenic	rs9291437-C	0.3945	1E-8	(MTAG)	0.0097	[0.0064-0.013] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
754	chr4	22165254	22165255	rs9291437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs9291437-C	0.3907	2E-8		0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
754	chr4	22165254	22165255	rs9291437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.2	Intergenic	rs9291437-C	0.3907	5E-11	(MTAG)	0.0088	[0.0063-0.0113] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
754	chr4	22165254	22165255	rs9291437	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.2	Intergenic	rs9291437-C	0.3903	4E-8	(MTAG)	0.0129	[0.0082-0.0176] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
754	chr4	22174770	22174771	rs7697101	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4p15.2	intergenic	rs7697101-T	0.588	8E-16		0.19	[0.15-0.24] unit decrease	Affymetrix [339439]	N
754	chr4	22192994	22192995	rs78808910	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.2	NR	rs78808910-?	NR	1E-6		4.815	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
754	chr4	22197307	22197308	rs10013755	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Stromal-cell-derived factor 1 alpha levels	5,998 Finnish ancestry individuals	NA	4p15.2	NR	rs10013755-T		2E-7		0.5302	[0.33-0.73] SD units decrease	NR [10700000] (imputed)	N
754	chr4	22218149	22218150	rs56149312	32579418	Maukonen M	2020-06-24	J Biol Rhythms	Genetic Associations of Chronotype in the Finnish General Population.	Evening vs. morning chronotype (self-assessed)	3,759 Finnish ancestry evening individuals , 4,674 Finnish ancestry morning individuals	NA	4p15.2	intergenic	rs56149312-?	NR	9E-6		1.1532881	[1.08-1.23]	Illumina [5842835] (imputed)	N
754	chr4	22235367	22235368	rs11931969	34337005	Duan H	2021-07-17	Biomed Res Int	A Genome-Wide Association Study of Age-Related Hearing Impairment in Middle- and Old-Aged Chinese Twins.	Hearing function	131 Chinese ancestry dizygotic twin pairs	NA	4p15.2		rs11931969-?	NR	5E-6				Illumina [1365315]	N
755	chr4	22398513	22398514	rs7656795	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	4p15.2	GPR125	rs7656795-T	0.8175	1E-6		0.037	NR unit decrease	NR [NR] (imputed)	N
755	chr4	22409665	22409666	rs13151905	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in non drinkers	782 Korean ancestry cases, 18,058 Korean ancestry controls	NA	4p15.2		rs13151905-?	NR	5E-6		1.71	[1.358-2.153]	Affymetrix [7975321] (imputed)	N
756	chr4	22459058	22459059	rs7654335	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	GBA3	rs7654335-?	NR	6E-7	(taurocholate)	1.0600517	[0.64-1.48] unit decrease	Affymetrix [at least 2500000] (imputed)	N
756	chr4	22465822	22465823	rs12503615	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	GBA3	rs12503615-?	NR	4E-6	(tauro deoxycholate)	0.8541599	[0.49-1.22] unit decrease	Affymetrix [at least 2500000] (imputed)	N
756	chr4	22465990	22465991	rs17598910	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.2	NR	rs17598910-?	NR	2E-37				Affymetrix [NR]	N
756	chr4	22470617	22470618	rs6851006	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.2	NR	rs6851006-?	NR	2E-37				Affymetrix [NR]	N
757	chr4	22627280	22627281	rs112577387	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	4p15.2	NR	rs112577387-?	NR	9E-6		14.296	NR unit increase	Affymetrix [at least 600000] (imputed)	N
757	chr4	22631960	22631961	rs73123536	31113495	Evans KL	2019-05-21	Hum Genomics	Genetics of heart rate in heart failure patients (GenHRate).	Heart rate in heart failure with reduced ejection fraction	523 European ancestry individuals, 520 African American individuals	NA	4p15.2	NR	rs73123536-?	NR	9E-6		14.296	NR unit increase	Affymetrix [at least 600000] (imputed)	N
758	chr4	22714326	22714327	rs79399931	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Fasting glucose	543 Chilean individuals	NA	4p15.2	GBA3	rs79399931-A	0.02	7E-7		11.391	[6.89-15.9] unit decrease	Illumina [NR] (imputed)	N
758	chr4	22793513	22793514	rs358255	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p15.2	NR	rs358255-G	NR	1E-9		0.0191	[0.013-0.025] unit increase	Affymetrix [9000000] (imputed)	N
758	chr4	22795998	22795999	rs111863753	29551627	Hawcutt DB	2018-03-15	Lancet Respir Med	Susceptibility to corticosteroid-induced adrenal suppression: a genome-wide association study.	Peak cortisol response to low dose short synacthen test in corticosteroid treated asthma	407 European ancestry child cases	NA	4p15.2	GBA3	rs111863753-?	NR	8E-7				Illumina [430492]	N
759	chr4	22806762	22806763	rs453881	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite modules (eigenmetabolites) in chronic kidney disease	1,221 cases	406 cases	4p15.2	GBA3	rs453881-T	0.15	2E-30	(X-13847, X-23299, X-23314, X-23502)	0.013	[0.011-0.015] unit increase	Illumina [7750367] (imputed)	N
759	chr4	22806762	22806763	rs453881	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.2	GBA3	rs453881-T	0.15	2E-27	(X - 23299)	1.087	[0.89-1.28] unit increase	Illumina [7750367] (imputed)	N
759	chr4	22812281	22812281	rs5856715	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4p15.2		rs5856715-AT	NR	6E-10		0.0181	[0.012-0.024] unit increase	Affymetrix, Illumina [20535231] (imputed)	N
759	chr4	22820503	22820504	rs358231	33356394	Gill D	2020-12-28	Hypertension	Urate, Blood Pressure, and Cardiovascular Disease: Evidence From Mendelian Randomization and Meta-Analysis of Clinical Trials.	Urate levels	454,183 European ancestry individuals	NA	4p15.2	NR	rs358231-A	0.15	3E-12		0.0178	[0.013-0.023] unit decrease	NR [NR]	N
759	chr4	22820503	22820504	rs358231	33031748	Feofanova EV	2020-10-01	Am J Hum Genet	A Genome-wide Association Study Discovers 46 Loci of the Human Metabolome in the Hispanic Community Health Study/Study of Latinos.	Serum metabolite levels	3,926 Hispanic/Latino individuals	NA	4p15.2	GBA3	rs358231-A	0.111819	2E-27	(methyl glucopyranoside (alpha + beta))	0.385	[0.32-0.45] unit increase	Illumina [13039987] (imputed)	N
759	chr4	22820503	22820504	rs358231	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.2	GBA3	rs358231-A	0.15	2E-38	(X - 23314)	1.807	[1.53-2.08] unit increase	Illumina [7750367] (imputed)	N
759	chr4	22820503	22820504	rs358231	23093944	Krumsiek J	2012-10-18	PLoS Genet	Mining the unknown: a systems approach to metabolite identification combining genetic and metabolic information.	Serum metabolite levels	1,678 European ancestry individuals	NA	4p15.2	GBA3	rs358231-?	NR	3E-17	(X-11799)	0.1373	[NR] unit increase	Affymetrix [655658]	N
759	chr4	22823579	22823580	rs358228	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.2	GBA3	rs358228-C	0.16	1E-30	(X - 13847)	0.861	[0.71-1.01] unit increase	Illumina [7750367] (imputed)	N
759	chr4	22824020	22824021	rs3099557	24816252	Shin SY	2014-05-11	Nat Genet	An atlas of genetic influences on human blood metabolites.	Blood metabolite levels	7,824 European ancestry individuals	NA	4p15.2	GBA3	rs3099557-A	0.85	2E-39	(X-11799)	0.148	[0.13-0.17] unit decrease	Affymetrix, Illumina [2100000] (imputed)	N
759	chr4	22827510	22827511	rs168578	31959995	Schlosser P	2020-01-20	Nat Genet	Genetic studies of urinary metabolites illuminate mechanisms of detoxification and excretion in humans.	Urinary metabolite levels in chronic kidney disease	1,221 cases	406 cases	4p15.2	GBA3	rs168578-T	0.15	2E-14	(X - 23311)	0.593	[0.44-0.75] unit increase	Illumina [7750367] (imputed)	N
759	chr4	22923248	22923249	rs61792199	25158072	Yu D	2014-10-31	Am J Psychiatry	Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD.	Tourette's syndrome or obsessive-compulsive disorder	1,310 Ashkenazi Jewish, South African Afrikaner ancestry, and other European ancestry OCD cases, 834 Ashkenazi Jewish, French Canadian and other European ancestry Tourette's Syndrome cases, 579 Ashkenazi Jewish, South African Afrikaner ancestry, French Canadian and other European ancestry OCD and Tourette's syndrome cases, 4,975 European ancestry controls, 338 Ashkenazi Jewish controls, 196 French Canadian controls, 158 South African Afrikaner ancestry controls, 290 European ancestry OCD parent-child trios	NA	4p15.2	Mir_340, GBA3	rs61792199-G	0.15	9E-6		1.23	[NR]	Illumina [7659573] (imputed)	N
760	chr4	22940210	22940211	rs16873221	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Anti-saccade response	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4p15.2	GBA3	rs16873221-T	0.0607	2E-6				Illumina [4404269] (imputed)	N
760	chr4	22970331	22970332	rs35231001	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p15.2		rs35231001-?	NR	5E-9				Illumina [1128286]	N
760	chr4	22970331	22970332	rs35231001	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III)	395 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p15.2		rs35231001-?	NR	2E-14				Illumina [1128286]	N
760	chr4	23010005	23010006	rs10805238	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.2		rs10805238-G	0.737	2E-8		0.008	[0.006-0.01] unit decrease	NR [NR] (imputed)	N
760	chr4	23018703	23018704	rs7664442	26451028	Hofer E	2015-10-08	Stroke	White Matter Lesion Progression: Genome-Wide Search for Genetic Influences.	White matter lesion progression (adjusted for white matter lesion burden at baseline)	1,085 European ancestry elderly cases, 6,688 European ancestry elderly controls	NA	4p15.2	GBA3	rs7664442-G	0.08	2E-6		1.5384616	[NR]	Affymetrix, Illumina [up to 2543887] (imputed)	N
760	chr4	23027093	23027094	rs114105899	30679421	Felsky D	2019-01-24	Nat Commun	Neuropathological correlates and genetic architecture of microglial activation in elderly human brain.	Proportion of activated microglia (inferior temporal cortex)	219 individuals	NA	4p15.2	RP11-412P11.1	rs114105899-G	0.0158	8E-7		0.1197	NR unit increase	NR [NR] (imputed)	N
761	chr4	23108847	23108848	rs113364911	33888907	Shelton JF	2021-04-22	Nat Genet	Trans-ancestry analysis reveals genetic and nongenetic associations with COVID-19 susceptibility and severity.	COVID-19 (hospitalized covid vs population)	613 European ancestry cases, 680,416 European ancestry controls, 140 Hispanic or Latin American cases, 94,327 Hispanic or Latin American controls, 49 Black or African American cases, 22,410 Black or African American controls	NA	4p15.2		rs113364911-?	NR	3E-6		0.8112763	[0.47-1.15] unit increase	Illumina [9875426] (imputed)	N
761	chr4	23160660	23160661	rs11733138	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	LOC643751	rs11733138-?	NR	6E-6	(carnitine)	0.22510558	[0.13-0.32] unit increase	Affymetrix [at least 2500000] (imputed)	N
763	chr4	23346183	23346184	rs34939008	30946743	Li Z	2019-04-04	PLoS Genet	Genome-wide association study in Turkish and Iranian populations identify rare familial Mediterranean fever gene (MEFV) polymorphisms associated with ankylosing spondylitis.	Ankylosing spondylitis	921 Turkish ancestry cases, 907 Turkish ancestry controls, 422 Iranian ancestry cases, 754 Iranian ancestry controls	NA	4p15.2	GBA3	rs34939008-G	NR	7E-6		1.3513513	[1.35-1.35]	Illumina [up to 294091]	N
763	chr4	23408086	23408087	rs71637794	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4p15.2		rs71637794-G	NR	8E-12		0.0159	[0.011-0.02] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
763	chr4	23423585	23423586	rs215412	33479212	Yao X	2021-01-21	Transl Psychiatry	Integrative analysis of genome-wide association studies identifies novel loci associated with neuropsychiatric disorders.	Schizophrenia (MTAG)	at least 33,640 European ancestry cases, at least 43,456 European ancestry controls	NA	4p15.2	NR	rs215412-A	0.3042	3E-8		0.06407612	[0.041-0.087] unit increase	NR [NR]	N
763	chr4	23423585	23423586	rs215412	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4p15.2	NR	rs215412-?	NR	6E-9		1.06258	[1.04-1.08]	Affymetrix, Illumina [12447948] (imputed)	N
763	chr4	23423585	23423586	rs215412	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4p15.2	RFPL4AP3	rs215412-?	NR	3E-8		0.011997007	[0.0078-0.0162] unit decrease	NR [7306098]	N
763	chr4	23423602	23423603	rs215411	31268507	Periyasamy S	2019-07-03	JAMA Psychiatry	Association of Schizophrenia Risk With Disordered Niacin Metabolism in an Indian Genome-wide Association Study.	Schizophrenia	816 Indian ancestry cases, 900 Indian ancestry controls, 505 Indian ancestry cases and 871 Indian ancestry controls from 405 families, up to 36,989 European and unknown ancestry cases, up to 113,075 European and unknown ancestry controls	NA	4p15.2	NR	rs215411-?	NR	6E-8				Illumina [up to 5582932] (imputed)	N
763	chr4	23423602	23423603	rs215411	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4p15.2	PPARGC1A	rs215411-A	NR	4E-9		1.066	[1.04-1.09]	Illumina [6627481] (imputed)	N
763	chr4	23423602	23423603	rs215411	30285260	Ikeda M	2018-10-03	Schizophr Bull	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.	Schizophrenia	14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls	NA	4p15.2	PPARGC1A	rs215411-A	NR	2E-9	(EA)	1.0717	[1.05-1.09]	Illumina [6627481] (imputed)	N
763	chr4	23423602	23423603	rs215411	29483656	Pardinas AF	2018-02-26	Nat Genet	Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	Schizophrenia	40,675 European ancestry cases, 64,643 European ancestry controls	1,651 European ancestry cases, 4,111 cases, 142,717 European ancestry controls, 11,507 controls	4p15.2	MIR548AJ2	rs215411-?	NR	1E-8		1.059322	[1.04-1.08]	Illumina [8000000] (imputed)	N
763	chr4	23423602	23423603	rs215411	28991256	Li Z	2017-10-09	Nat Genet	Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.	Schizophrenia	7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls	4,384 Chinese ancestry cases, 5,770 Chinese ancestry controls	4p15.2	MIR548AJ2	rs215411-A	NR	6E-10		1.069	[1.05-1.09]	Affymetrix, Illumina [up to 5107227] (imputed)	N
763	chr4	23423602	23423603	rs215411	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p15.2	NR	rs215411-A	NR	7E-9		1.07	[NR]	Illumina [7158791] (imputed)	N
763	chr4	23423602	23423603	rs215411	25056061	Ripke S	2014-07-22	Nature	Biological insights from 108 schizophrenia-associated genetic loci.	Schizophrenia	32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls	1,513 European ancestry cases, 66,236 European ancestry controls	4p15.2	MIR548AJ2	rs215411-A	0.314	3E-8		1.064	[1.041-1.087]	Affymetrix, Illumina [9005918] (imputed)	N
764	chr4	23485011	23485012	rs17613848	33562295	Coltell O	2021-02-07	Nutrients	Circulating Adiponectin and Its Association with Metabolic Traits and Type 2 Diabetes: Gene-Diet Interactions Focusing on Selected Gene Variants and at the Genome-Wide Level in High-Cardiovascular Risk Mediterranean Subjects.	Adiponectin levels	954 European ancestry high cardiovascular risk elderly individuals	NA	4p15.2	LOC105374524	rs17613848-A	0.135	4E-6		0.123	[NR] unit decrease	Illumina [625127]	N
764	chr4	23485263	23485264	rs6857002	33321125	Nasu T	2020-12-13	Int J Cardiol	A genome-wide association study for highly sensitive cardiac troponin T levels identified a novel genetic variation near a RBAK-ZNF890P locus in the Japanese general population.	HIgh-sensitivity cardiac troponin T levels (high vs low)	967 Japanese ancestry high hs-cTnT individuals, 2,816 Japanese ancestry low hs-cTnT individuals	190 Japanese ancestry high hs-cTnT individuals, 708 Japanese ancestry low hs-cTnT individuals	4p15.2	NR	rs6857002-G	0.15	1E-6		0.057	[0.033-0.081] unit increase	Illumina [7151284] (imputed)	N
764	chr4	23532960	23532961	rs752744147	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4p15.2	RFPL4AP3	rs752744147-T	0.0022	4E-6		0.7383	[0.42-1.05] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
764	chr4	23581155	23581156	rs10470807	30621171	Coltell O	2019-01-04	Nutrients	Genome-Wide Association Study (GWAS) on Bilirubin Concentrations in Subjects with Metabolic Syndrome: Sex-Specific GWAS Analysis and Gene-Diet Interactions in a Mediterranean Population.	Serum bilirubin levels x sex interaction in metabolic syndrome	188 European ancestry male individuals, 242 European ancestry female individuals	NA	4p15.2	LOC105374525	rs10470807-?	NR	7E-6				Illumina [622468]	N
764	chr4	23588461	23588462	rs1511453	23400010	Del-Aguila JL	2013-02-12	Pharmacogenomics J	Genome-wide association analyses suggest NELL1 influences adverse metabolic response to HCTZ in African Americans.	Thiazide-induced adverse metabolic effects in hypertensive patients	425 European ancestry cases, 342 African American cases	NA	4p15.2	PPARGC1A	rs1511453-A	0.08	5E-6	(EA-glucose response)	4.95	[2.83-7.07] mg/dL increase	Affymetrix, Illumina [> 2000000] (imputed)	N
765	chr4	23678195	23678196	rs61796681	31689377	Wootton RE	2019-11-06	Psychol Med	Evidence for causal effects of lifetime smoking on risk for depression and schizophrenia: a Mendelian randomisation study.	Lifetime smoking index	462,690 European ancestry individuals	NA	4p15.2		rs61796681-A	0.912	4E-8		0.019	[0.011-0.027] unit decrease	Affymetrix [up to 90000000] (imputed)	N
766	chr4	23725069	23725070	rs55945499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Red blood cell count	350,475 European ancestry individuals, 153,512 East Asian ancestry individuals	NA	4p15.2		rs55945499-T	NR	6E-13		0.0126	[0.0093-0.0159] unit increase	Affymetrix, Illumina [20538708] (imputed)	N
766	chr4	23725069	23725070	rs55945499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin	350,474 European ancestry individuals, 152,447 East Asian ancestry individuals	NA	4p15.2		rs55945499-T	NR	4E-15		0.0129	[0.0098-0.016] unit increase	Affymetrix, Illumina [20538521] (imputed)	N
766	chr4	23725069	23725070	rs55945499	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hematocrit	350,475 European ancestry individuals, 153,015 East Asian ancestry individuals	NA	4p15.2		rs55945499-T	NR	5E-15		0.0132	[0.0099-0.0165] unit increase	Affymetrix, Illumina [20538534] (imputed)	N
766	chr4	23725069	23725070	rs55945499	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4p15.2	RP11-380P13.2	rs55945499-T	0.519049	4E-9		0.01335153	[0.0089-0.0178] unit increase	Affymetrix [93095623] (imputed)	N
766	chr4	23725344	23725345	rs12500531	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p15.2	NR	rs12500531-?	NR	2E-8	(left thalamus proper)			NR [9227495] (imputed)	N
766	chr4	23729565	23729566	rs11736863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p15.2		rs11736863-?	NR	1E-12				NR [~ 8900000] (imputed)	N
766	chr4	23729565	23729566	rs11736863	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs11736863-A	0.1895	3E-15		0.0142	[0.011-0.018] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
766	chr4	23729565	23729566	rs11736863	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.2	Intergenic	rs11736863-A	0.1895	4E-14	(MTAG)	0.0127	[0.0094-0.016] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
766	chr4	23736522	23736523	rs16874052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Estimated glomerular filtration rate	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p15.2	NR	rs16874052-G	NR	2E-10		0.0347	[0.024-0.045] unit increase	Affymetrix [9000000] (imputed)	N
766	chr4	23736522	23736523	rs16874052	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Creatinine levels	342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals	NA	4p15.2	NR	rs16874052-G	NR	9E-11		0.0356	[0.025-0.046] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr4	23736522	23736523	rs16874052	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	562,259 European ancestry individuals	NA	4p15.2	NR	rs16874052-G	0.047297	4E-24		0.044102	[0.036-0.053] SD unit increase	Affymetrix, Illumina [50640577] (imputed)	N
766	chr4	23736522	23736523	rs16874052	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p15.2		rs16874052-?	NR	2E-20				NR [~ 8900000] (imputed)	N
766	chr4	23737864	23737865	rs16874060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Red blood cell count	408,112 British individuals	NA	4p15.2	RP11-380P13.1	rs16874060-G	0.047265	2E-19		0.04671265	[0.037-0.057] unit increase	Affymetrix [93095623] (imputed)	N
766	chr4	23737864	23737865	rs16874060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4p15.2	RP11-380P13.1	rs16874060-G	0.047264	8E-22		0.050063234	[0.04-0.06] unit increase	Affymetrix [93095623] (imputed)	N
766	chr4	23737864	23737865	rs16874060	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4p15.2	RP11-380P13.1	rs16874060-G	0.047269	3E-17		0.04504136	[0.035-0.055] unit increase	Affymetrix [93095623] (imputed)	N
766	chr4	23737864	23737865	rs16874060	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	545,203 European ancestry individuals	NA	4p15.2	NR	rs16874060-G	0.047346	8E-21		0.04073	[0.032-0.049] SD unit increase	Affymetrix, Illumina [50628390] (imputed)	N
766	chr4	23741582	23741583	rs73260455	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p15.2		rs73260455-A	NR	5E-15		0.0301	[0.023-0.038] unit decrease	Affymetrix, Illumina [20538295] (imputed)	N
766	chr4	23743837	23743838	rs73260456	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	563,946 European ancestry individuals	NA	4p15.2	NR	rs73260456-A	0.047643	2E-22		0.042163	[0.034-0.051] SD unit increase	Affymetrix, Illumina [50638016] (imputed)	N
766	chr4	23743961	23743962	rs16874073	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals, 165,726 East Asian ancestry individuals, 13,842 African American individuals, 13,359 South Asian ancestry individuals, 4,961 Hispanic individuals	216,518 European ancestry individuals, 64,204 non-Hispanic black individuals	4p15.2	PPARGC1A	rs16874073-T	0.9474	2E-16		0.0045	[0.0031-0.0059] unit decrease	Affymetrix, Illumina [8221591] (imputed)	N
766	chr4	23746419	23746420	rs73260458	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Cystatin C levels	342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals	NA	4p15.2	NR	rs73260458-T	NR	8E-10		0.0337	[0.023-0.044] unit decrease	Affymetrix [9000000] (imputed)	N
766	chr4	23747376	23747377	rs55944055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Red blood cell count	727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.2	NR	rs55944055-G	0.0478634	3E-18				Affymetrix, Illumina [24332387] (imputed)	N
766	chr4	23747376	23747377	rs55944055	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hemoglobin concentration	746,431 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.2	NR	rs55944055-G	0.0479023	4E-20				Affymetrix, Illumina [24653286] (imputed)	N
766	chr4	23753052	23753053	rs7689064	32665545	van der Meer D	2020-07-14	Nat Commun	Understanding the genetic determinants of the brain with MOSTest.	Subcortical volume (min-P)	26,502 European ancestry individuals	NA	4p15.2	WNT2B, ST7L, CAPZA1, MOV10, RHOC, RP11-426L16.10, PPM1J	rs7689064-?		2E-8				NR [7428630] (imputed)	N
766	chr4	23758661	23758662	rs73243607	31015462	Graham SE	2019-04-23	Nat Commun	Sex-specific and pleiotropic effects underlying kidney function identified from GWAS meta-analysis.	Estimated glomerular filtration rate	206,856 European ancestry individuals, 143,658 East Asian ancestry individuals	NA	4p15.2	PPARGC1A	rs73243607-C	0.962	3E-8		5.521	NR z score decrease	Illumina [26237160] (imputed)	N
766	chr4	23759777	23759778	rs73243608	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Hematocrit	737,823 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.2	NR	rs73243608-C	0.039059	8E-22				Affymetrix, Illumina [24558453] (imputed)	N
766	chr4	23768835	23768836	rs76369738	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Blood urea nitrogen levels	344,052 European ancestry individuals, 148,767 East Asian ancestry individuals	NA	4p15.2		rs76369738-T	NR	3E-9		0.0309	[0.021-0.041] unit decrease	Affymetrix, Illumina [20538307] (imputed)	N
766	chr4	23771189	23771190	rs115192829	34046847	Yao Y	2021-05-27	Endocrine	Evaluate the effects of serum urate level on bone mineral density: a genome-wide gene-environment interaction analysis in UK Biobank cohort.	Femur bone mineral density x serum urate levels interaction	2,225 men, 2,350 women	NA		PPARGC1A	rs115192829-?	NR	9E-9		2.3706	[NR] unit increase	Affymetrix [NR] (imputed)	N
766	chr4	23794343	23794344	rs41359445	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4p15.2	PPARGC1A	rs41359445-A	0.01	7E-8		0.6109	[0.39-0.83] unit decrease	Illumina [~ 9000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	7E-9	(-118 ms)	0.033341	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	5E-9	(-124 ms)	0.0330561	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	5E-9	(-120 ms)	0.0334083	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	5E-8	(-130 ms)	0.0306259	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	4E-9	(-122 ms)	0.0333974	[0.022-0.044] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	3E-8	(-128 ms)	0.0311748	[0.02-0.042] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	3E-8	(-114 ms)	0.0317294	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	2E-8	(-116 ms)	0.032553	[0.022-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	32916098	Verweij N	2020-09-02	Cell Syst	The Genetic Makeup of the Electrocardiogram.	Electrocardiogram morphology (amplitude at temporal datapoints)	63,706 European and unknown ancestry individuals	NA	4p15.2	PPARGC1A	rs768695-G	0.492776	1E-8	(-126 ms)	0.0320792	[0.021-0.043] unit decrease	Affymetrix [10000000] (imputed)	N
766	chr4	23798817	23798818	rs768695	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p15.2	NR	rs768695-?	NR	6E-6		0.0078592	[0.0044-0.0113] unit decrease	Affymetrix [805426] (imputed)	N
766	chr4	23813108	23813109	rs7667050	31152163	Wuttke M	2019-05-31	Nat Genet	A catalog of genetic loci associated with kidney function from analyses of a million individuals.	Estimated glomerular filtration rate	567,460 European ancestry individuals	216,518 European ancestry individuals	4p15.2	PPARGC1A	rs7667050-T	0.471	3E-14		0.002	[0.0014-0.0026] unit increase	Affymetrix, Illumina [8834748] (imputed)	N
766	chr4	23821264	23821265	rs2932974	34006833	Elvsashagen T	2021-05-18	Nat Commun	The genetic architecture of the human thalamus and its overlap with ten common brain disorders.	Intralaminar thalamic nuclei volume	30,114 white British ancestry individuals			PPARGC1A	rs2932974-G	0.2416	8E-10		0.0586849	[0.04-0.077] unit decrease	Affymetrix [8165723] (imputed)	N
766	chr4	23826957	23826958	rs2970854	32439900	Ntalla I	2020-05-21	Nat Commun	Multi-ancestry GWAS of the electrocardiographic PR interval identifies 202 loci underlying cardiac conduction.	PR interval	271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals	NA	4p15.2	PPARGC1A	rs2970854-G	0.2608	5E-15		0.5675	[0.43-0.71] ms increase	Affymetrix, Illumina [at least 167995] (imputed)	N
766	chr4	23850567	23850568	rs188794202	26252872	Li QS	2015-08-07	PLoS One	Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid A?1-42 Level.	Cognitive decline rate in late mild cognitive impairment	472 European ancestry cases, 47 cases	NA	4p15.2	PPARGC1A	rs188794202-C	0.0014	1E-7	(EA)	0.5678	[0.36-0.78] unit decrease	Illumina [~ 9000000] (imputed)	N
767	chr4	23855973	23855974	rs7437482	28322283	Chibnik LB	2017-03-21	Mol Psychiatry	Susceptibility to neurofibrillary tangles: role of the PTPRD locus and limited pleiotropy with other neuropathologies.	Diffuse plaques	909 European ancestry individuals	369 individuals	4p15.2		rs7437482-C	0.39	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
767	chr4	23876786	23876787	rs60571065	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p15.2		rs60571065-?	NR	1E-11				Illumina [1128286]	N
767	chr4	23882518	23882519	rs11734408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	180,094 European ancestry men	NA	4p15.2	NR	rs11734408-G	0.29320900000000005	2E-13		0.00848765	[0.006-0.011] unit increase	Affymetrix [16582621] (imputed)	N
767	chr4	23882518	23882519	rs11734408	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	180,726 European ancestry men	NA	4p15.2	NR	rs11734408-G	0.29320900000000005	3E-10		0.00767697	[0.005-0.0103] unit increase	Affymetrix [16582614] (imputed)	N
767	chr4	23887453	23887454	rs2970877	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	368,929 European ancestry individuals	NA	4p15.2	NR	rs2970877-G	0.29676800000000003	2E-20		0.00853285	[0.0067-0.0103] unit increase	Affymetrix [16582909] (imputed)	N
767	chr4	23887453	23887454	rs2970877	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	370,125 European ancestry individuals	NA	4p15.2	NR	rs2970877-G	0.29676800000000003	2E-13		0.00774863	[0.0057-0.0097] unit increase	Affymetrix [16582965] (imputed)	N
767	chr4	23888618	23888619	rs2970876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hemoglobin	408,112 British individuals	NA	4p15.2	PPARGC1A	rs2970876-G	0.490164	1E-10		0.014319138	[0.01-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
767	chr4	23888618	23888619	rs2970876	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Hematocrit	408,112 British individuals	NA	4p15.2	PPARGC1A	rs2970876-G	0.490201	1E-10		0.014310029	[0.01-0.0187] unit decrease	Affymetrix [93095623] (imputed)	N
767	chr4	23890581	23890582	rs2970871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels adjusted for BMI	188,908 European ancestry women	NA	4p15.2	NR	rs2970871-T	0.441213	3E-8		0.00731296	[0.0049-0.0098] unit increase	Affymetrix [16585854] (imputed)	N
767	chr4	23890581	23890582	rs2970871	32042192	Ruth KS	2020-02-10	Nat Med	Using human genetics to understand the disease impacts of testosterone in men and women.	Sex hormone-binding globulin levels	189,473 European ancestry women	NA	4p15.2	NR	rs2970871-T	0.441213	3E-7		0.00751381	[0.0047-0.0103] unit increase	Affymetrix [16585866] (imputed)	N
767	chr4	23893016	23893017	rs2970870	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Red blood cell count	approximately 445,000 European ancestry individuals	NA	4p15.2		rs2970870-?	NR	2E-9				NR [~ 8900000] (imputed)	N
767	chr4	23898042	23898043	rs2970862	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4p15.2	NR	rs2970862-T	NR	1E-9		0.0174	[0.012-0.023] unit increase	Affymetrix [9000000] (imputed)	N
767	chr4	23914770	23914770	rs143944064	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA		NR	rs143944064-ACT	NR	3E-11		0.0211	[0.015-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
767	chr4	23918559	23918560	rs372822970	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Pulse pressure	225,112 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	445,360 individuals	4p15.2	intergenic	rs372822970-T	3.0E-4	1E-56		33.4584	[29.32-37.59] mmHg increase	Affymetrix [NR] (imputed)	N
767	chr4	23919527	23919528	rs7691998	31557306	Wang RS	2019-09-26	Clin Pharmacol Ther	Pharmacogenomics and Placebo Response in a Randomized Clinical Trial in Asthma.	Subjective response to placebo treatment in childhood asthma (change in cough/wheeze)	250 European ancestry children	NA	4p15.2	PPARGC1A	rs7691998-G	0.47	8E-6		0.83	NR unit increase	Illumina [NR] (imputed)	N
767	chr4	23925986	23925987	rs11932940	33547301	Chen VL	2021-02-05	Nat Commun	Genome-wide association study of serum liver enzymes implicates diverse metabolic and liver pathology.	Aspartate aminotransferase levels	389,565 European ancestry individuals	134,182 East Asian ancestry individuals	4p15.2	PPARGC1A	rs11932940-A	0.69	2E-10		6.38	z-score increase	Affymetrix [4314223] (imputed)	N
767	chr4	23935052	23935053	rs4697428	31046077	Zhong VW	2019-05-02	Hum Mol Genet	A genome-wide association study of bitter and sweet beverage consumption.	Coffee consumption	335,909 European ancestry individuals	39,924 European ancestry individuals	4p15.2	PPARGC1A	rs4697428-T	0.9078	3E-6		0.012	[0.0069-0.0171] unit increase	Affymetrix [~ 7740000] (imputed)	N
767	chr4	23939919	23939920	rs11734373	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p15.2	PPARGC1A	rs11734373-?		3E-11				Affymetrix, Illumina [NR] (imputed)	N
767	chr4	23951017	23951018	rs12501032	27798624	Eppinga RN	2016-10-31	Nat Genet	Identification of genomic loci associated with resting heart rate and shared genetic predictors with all-cause mortality.	Resting heart rate	127,919 European ancestry individuals, 2,478 Asian ancestry individuals, 1,734 Black individuals, 684 Mixed ancestry individuals, 1,436 individuals	130,795 European ancestry individuals	4p15.2	PPARGC1A	rs12501032-G	0.31	2E-15		0.2878	[0.22-0.36] unit increase	Affymetrix [19941912] (imputed)	N
767	chr4	23951017	23951018	rs12501032	22179738	Lai HM	2011-12-16	Rheumatology (Oxford)	Gout and type 2 diabetes have a mutual inter-dependent effect on genetic risk factors and higher incidences.	Gout	20 Han Chinese ancestry male gout cases, 42 Han Chinese ancestry male controls	NA	4p15.2	PPARGC1	rs12501032-?		1E-7				Illumina [479403]	N
768	chr4	24012257	24012258	rs2191602	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Systolic blood pressure (baseline)	5,304 African American individuals	6,500 African American individuals	4p15.2	NR	rs2191602-T	0.7549	2E-7		0.8052	[0.5-1.11] mmHg decrease	Affymetrix, Illumina [NR] (imputed)	N
768	chr4	24026480	24026481	rs648674	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FEV1/FVC)	approximately 370,000 European ancestry individuals	NA	4p15.2		rs648674-?	NR	9E-16				NR [~ 8900000] (imputed)	N
768	chr4	24027225	24027226	rs2324154	33097823	Pei YF	2020-10-23	Commun Biol	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.	Appendicular lean mass	450,243 European ancestry individuals	NA	4p15.2	intergenic	rs2324154-A	0.5096	2E-15		0.015	[0.011-0.019] unit increase	Affymetrix [18391927] (imputed)	N
768	chr4	24045655	24045656	rs687706	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.2	NR	rs687706-?	NR	2E-9				Affymetrix [NR]	N
768	chr4	24054477	24054477	rs35190601	34779240	Cheng B	2021-11-01	Bone Joint Res	Gut microbiota is associated with bone mineral density : an observational and genome-wide environmental interaction analysis in the UK Biobank cohort.	Femur total bone mineral density x gut microbiota (genus Lactococcus) interaction	2,293 European ancestry individuals	NA	4p15.2		rs35190601-A	NR	1E-8		0.833	[0.54-1.12] unit decrease	Affymetrix [509886] (imputed)	N
769	chr4	24129036	24129037	rs34751092	29422769	Shah RL	2018-02-05	Mol Vis	A genome-wide association study of corneal astigmatism: The CREAM Consortium.	Corneal astigmatism	9,293 European ancestry cases, 12,957 European ancestry controls, 4,349 Asian ancestry cases, 4,771 Asian ancestry controls	NA	4p15.2	PPARGC1A	rs34751092-A	0.28	6E-7		1.09	[1.05-1.13]	NR [~ 55000000] (imputed)	N
769	chr4	24132552	24132553	rs11730701	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p15.2	NR	rs11730701-G	NR	1E-6		1.0526316	[NR]	Illumina [7158791] (imputed)	N
769	chr4	24185400	24185401	rs16875255	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4p15.2	NR	rs16875255-?	NR	6E-6		0.059154	[0.034-0.085] unit increase	Affymetrix [9658292] (imputed)	N
769	chr4	24246135	24246136	rs7679088	28441456	Lee MK	2017-04-25	PLoS One	Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2.	Facial morphology (factor 20)	2,187 European ancestry individuals	NA	4p15.2	NR	rs7679088-G	0.4489	4E-7		0.1514	[0.093-0.21] unit decrease	Illumina [10677593] (imputed)	N
770	chr4	24269621	24269622	rs4697446	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls	NA	4p15.2	NR	rs4697446-?	NR	4E-8		1.05096	[1.03-1.07]	Affymetrix, Illumina [12447948] (imputed)	N
770	chr4	24270209	24270210	rs6832165	31740837	Lam M	2019-11-18	Nat Genet	Comparative genetic architectures of schizophrenia in East Asian and European populations.	Schizophrenia	22,778 East Asian ancestry cases, 35,362 East Asian ancestry controls	NA	4p15.2	NR	rs6832165-?	NR	3E-8		1.12		Affymetrix, Illumina [9938587] (imputed)	N
770	chr4	24308078	24308079	rs16875528	26632684	Dong J	2015-11-01	Medicine (Baltimore)	Genome-wide Meta-analysis on the Sense of Smell Among US Older Adults.	Sense of smell	6,252 European ancestry individuals	NA	4p15.2	DHX15	rs16875528-T	0.01	9E-6		0.1	[0.061-0.139] ln(smell score+1) increase	Affymetrix, Illumina [2543887] (imputed)	N
770	chr4	24362540	24362541	rs17590046	27797806	Muller SH	2016-10-20	Brain	Genome-wide association study in essential tremor identifies three new loci.	Essential tremor	1,778 European ancestry cases, 5,376 European ancestry controls	1,029 European ancestry cases, 1,065 European ancestry controls	4p15.2	PPARGC1A	rs17590046-T	0.792899999999999	1E-9		1.2658228		Affymetrix [at least 416462] (imputed)	N
770	chr4	24375832	24375833	rs17650401	23918034	Kuhnisch J	2013-08-07	Clin Oral Investig	Genome-wide association study (GWAS) for molar-incisor hypomineralization (MIH).	Molar-incisor hypomineralization	88 European ancestry cases, 580 European ancestry controls	NA	4p15.2	MIR573, PPARGC1A	rs17650401-T	0.077	2E-6		6.9	[3.10-15.37]	Affymetrix [2013491] (imputed)	N
771	chr4	24483310	24483311	rs4697062	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Depressive symptoms (MTAG)	955,012 individuals	NA	4p15.2	NR	rs4697062-?		2E-8				NR [520857]	N
771	chr4	24495966	24495967	rs59143394	29255261	Luciano M	2017-12-18	Nat Genet	Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism.	Neuroticism	329,821 European ancestry individuals	122,867 European ancestry individuals	4p15.2	intergenic	rs59143394-A	0.69211	2E-6		4.797	z score decrease	Illumina [18485882] (imputed)	N
772	chr4	24515630	24515631	rs7698250	24383474	Manichaikul A	2014-01-02	Am J Respir Crit Care Med	Genome-wide study of percent emphysema on computed tomography in the general population. The Multi-Ethnic Study of Atherosclerosis Lung/SNP Health Association Resource Study.	Pulmonary emphysema	2,587 European ancestry individuals, 2,510 African American individuals, 2,113 Hispanic individuals, 704 Chinese ancestry individuals	6,023 European ancestry individuals	4p15.2	DHX15	rs7698250-T	0.027	2E-10	(Chinese)	0.463	[0.32-0.61] unit increase	Affymetrix [897981]	N
772	chr4	24578096	24578097	rs6841898	23049088	Meng W	2012-10-09	Invest Ophthalmol Vis Sci	A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.	Myopia (pathological)	187 European ancestry cases, 1064 European ancestry controls		4p15.2	DHX15	rs6841898-?	0.021	3E-26			[NR]	Affymetrix, Illumina [152234]	N
772	chr4	24626902	24626903	rs1395221	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p15.2	DHX15	rs1395221-G	0.602353	1E-8		0.0111605	[0.0073-0.015] unit increase	Affymetrix [NR] (imputed)	N
772	chr4	24626902	24626903	rs1395221	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4p15.2	DHX15	rs1395221-G	0.602365	4E-11		0.0132541	[0.0093-0.0172] unit increase	Affymetrix [NR] (imputed)	N
772	chr4	24640695	24640696	rs80234081	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p15.2	NR	rs80234081-?	NR	3E-8				Illumina [7760689] (imputed)	N
773	chr4	24644060	24644060	rs201060650	34387878	Kim KY	2021-08-13	Hepatology	Genome-wide association of individual vulnerability with alcoholic liver disease: A Korean Genome and Epidemiology Study.	Alcohol-associated liver disease in heavy drinkers	1,185 Korean ancestry cases, 2,246 Korean ancestry controls	NA	4p15.2		rs201060650-?	NR	8E-6		2.045	[1.493-2.802]	Affymetrix [7975321] (imputed)	N
773	chr4	24740957	24740958	rs12500612	23377640	GENDEP Investigators	2013-02-01	Am J Psychiatry	Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.	Major depressive disorder	Up to 2,256 European ancestry cases	NA	4p15.2	SOD3	rs12500612-G	0.85	7E-6	(partial response - 2 weeks)	1.7665	[1.51-2.02]	Affymetrix, Illumina [1200000] (imputed)	N
774	chr4	24778279	24778280	rs78792420	24324551	Deng X	2013-11-20	PLoS One	Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.	QRS duration in Tripanosoma cruzi seropositivity	580 Brazilian ancestry individuals	NA	4p15.2	NR	rs78792420-?	NR	2E-6				Affymetrix [5486770] (imputed)	N
774	chr4	24801833	24801834	rs1799895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein VNN2	5,367 Icelandic ancestry individuals	NA	4p15.2		rs1799895-G	0.02095	4E-13		0.487752	[0.36-0.62] unit decrease	Illumina [7506463] (imputed)	N
774	chr4	24801833	24801834	rs1799895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein PLBD1	5,365 Icelandic ancestry individuals	NA	4p15.2		rs1799895-G	0.02095	5E-33		0.783918	[0.66-0.91] unit increase	Illumina [7506463] (imputed)	N
774	chr4	24801833	24801834	rs1799895	35078996	Gudjonsson A	2022-01-25	Nat Commun	A genome-wide association study of serum proteins reveals shared loci with common diseases.	Serum levels of protein LRFN1	5,348 Icelandic ancestry individuals	NA	4p15.2		rs1799895-G	0.02095	3E-21		0.577826	[0.46-0.7] unit increase	Illumina [7506463] (imputed)	N
774	chr4	24801833	24801834	rs1799895	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum creatinine levels	344,104 European ancestry individuals, 150,266 East Asian ancestry individuals	NA	4p15.2		rs1799895-G	NR	2E-13		0.0654	[0.048-0.083] unit increase	Affymetrix, Illumina [20538295] (imputed)	N
774	chr4	24801833	24801834	rs1799895	29875488	Sun BB	2018-06-06	Nature	Genomic atlas of the human plasma proteome.	Blood protein levels	3,301 European ancestry individuals	NA	4p15.2	SOD3	rs1799895-G	0.016	4E-140	(Extracellular superoxide dismutase [Cu-Zn], SOD3.8463.2.3)	2.3	[2.12-2.48] unit increase	Affymetrix [10572788] (imputed)	N
774	chr4	24804237	24804238	rs2695234	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p15.2	SOD3	rs2695234-G	0.9190625	1E-64	(SOD3, 5660_51_3)	0.7359362	[0.65-0.82] unit decrease	Illumina [> 1000000] (imputed)	N
774	chr4	24804237	24804238	rs2695234	30072576	Emilsson V	2018-08-02	Science	Co-regulatory networks of human serum proteins link genetics to disease.	Blood protein levels	3,200 European ancestry individuals	NA	4p15.2	SOD3	rs2695234-G	0.9190625	1E-55	(SOD3, 8463_2_3)	0.6840991	[0.6-0.77] unit decrease	Illumina [> 1000000] (imputed)	N
774	chr4	24873603	24873604	rs13131918	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	4p15.2	CCDC149	rs13131918-?		7E-7	(paternal effect)			Affymetrix [715787]	N
774	chr4	24873603	24873604	rs13131918	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	4p15.2	CCDC149	rs13131918-?		3E-7	(paternal & maternal alleles modelled separately)			Affymetrix [715787]	N
774	chr4	24873603	24873604	rs13131918	30255771	Sarnowski C	2018-09-17	BMC Genet	Investigation of parent-of-origin effects induced by fenofibrate treatment on triglycerides levels.	Triglyceride levels (parental genotype effect)	173 European ancestry families	NA	4p15.2	CCDC149	rs13131918-?		1E-7	(difference between paternal and maternal transmissions)			Affymetrix [715787]	N
774	chr4	24874940	24874958	rs534951121	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Lean body mass	3,399 whole genome sequenced individuals, 11,801 European ancestry individuals	10,676 European ancestry individuals	4p15.2	CCDC149	rs534951121-T	0.0034	5E-7		0.6859	[0.42-0.95] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
774	chr4	24887390	24887391	rs2244757	29495422	Xu H	2018-02-26	J Pers Med	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Idiopathic dilated cardiomyopathy	662 African American cases, 1,138 African American controls	NA	4p15.2	CCDC149	rs2244757-T	0.963	7E-6		15.04	[26.82-1.07]	Affymetrix [up to 27494467] (imputed)	N
774	chr4	24890960	24890961	rs17594493	30498476	Liu H	2018-11-15	Front Endocrinol (Lausanne)	Heritability and Genome-Wide Association Study of Plasma Cholesterol in Chinese Adult Twins.	High density lipoprotein cholesterol levels	139 Chinese ancestry dizygotic twin pairs	NA	4p15.2	CCDC149	rs17594493-?		4E-6				Illumina [7405822] (imputed)	N
774	chr4	24899842	24899843	rs61793774	31596458	Greenwood TA	2019-10-09	JAMA Psychiatry	Genome-wide Association of Endophenotypes for Schizophrenia From the Consortium on the Genetics of Schizophrenia (COGS) Study.	California verbal learning test score	523 European ancestry schizophrenia cases, 100 Latino schizophrenia cases, 827 European ancestry controls, 83 Latino controls	NA	4p15.2	CCDC149	rs61793774-A	NR	1E-6		2.681527	[1.62-3.75] unit decrease	Illumina [> 6200000] (imputed)	N
775	chr4	24944214	24944215	rs137945355	28736931	Rotroff DM	2017-07-24	Clin Pharmacol Ther	Genetic Variants in HSD17B3, SMAD3, and IPO11 Impact Circulating Lipids in Response to Fenofibrate in Individuals With Type 2 Diabetes.	Triglyceride change in response to fenofibrate in statin-treated type 2 diabetes	781 European ancestry individuals, 138 African American ancestry individuals, 345 unknown ancestry individuals		4p15.2	CCDC149	rs137945355-?	NR	3E-7	(AA)	0.127	unit increase	Affymetrix, Illumina [8129838] (imputed)	N
775	chr4	24949219	24949220	rs6448317	25130324	Cai DC	2014-08-29	Genes Brain Behav	A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.	Heschl's gyrus morphology	1,778 European ancestry individuals, 1,276 individuals	NA	4p15.2	CCDC149	rs6448317-T	0.19	4E-6	(Right HG thickness)	0.0583	unit decrease	Affymetrix, Illumina [4103035] (imputed)	N
775	chr4	24996697	24996698	rs13135230	34616010	Quintanilha JCF	2021-10-06	Br J Cancer	Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients.	Bevacizumab-induced hypertension	1,039 European ancestry individuals	NA	4p15.2	intergenic	rs13135230-A	0.28	1E-6		0.47	[0.27-0.67] unit increase	Illumina [833710]	N
775	chr4	25012647	25012648	rs112783548	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Neutrophil count	349,856 European ancestry individuals, 82,810 East Asian ancestry individuals	NA	4p15.2		rs112783548-C	NR	2E-8		0.0412	[0.027-0.056] unit decrease	Affymetrix, Illumina [20526770] (imputed)	N
775	chr4	25033279	25033280	rs9998234	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Isthmus-cingulate cortex volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.2	NR	rs9998234-?		7E-6				Illumina [4322238] (imputed)	N
776	chr4	25057661	25057662	rs2324653	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Granulocyte-colony stimulating factor levels	7,904 Finnish ancestry individuals	NA	4p15.2	NR	rs2324653-G		5E-7		0.0808	[0.049-0.112] SD units increase	NR [10700000] (imputed)	N
776	chr4	25058322	25058323	rs759244	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-2 receptor antagonist levels	3,677 Finnish ancestry individuals	NA	4p15.2	NR	rs759244-T		2E-6		0.1126	[0.066-0.159] SD units increase	NR [10700000] (imputed)	N
776	chr4	25105894	25105895	rs78175371	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Prevotella sp900317685 abundance in stool	5,959 Finnish ancestry individuals	NA	4p15.2		rs78175371-A	0.0248011	2E-8		0.19678	[0.13-0.27] unit increase	Illumina [7980478] (imputed)	N
776	chr4	25107489	25107490	rs10939035	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.2	NR	rs10939035-?	NR	5E-8				Affymetrix [~ 8270000] (imputed)	N
776	chr4	25114600	25114601	rs10939037	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4p15.2	LGI2, SEPSECS	rs10939037-A	0.56	1E-10		1.05	[1.05-1.06]	Illumina [at least 560000] (imputed)	N
776	chr4	25114600	25114601	rs10939037	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4p15.2	LGI2, SEPSECS	rs10939037-?	NR	1E-10		1.0548522	[1.04-1.07]	Illumina [13757430] (imputed)	N
776	chr4	25117865	25117866	rs12510492	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	LGI2	rs12510492-?	NR	6E-6	(TAG 52:3)	0.15445732	[0.088-0.221] unit increase	Affymetrix [at least 2500000] (imputed)	N
776	chr4	25132493	25132494	rs10027350	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Childhood ear infection	46,936 European ancestry cases, 74,874 European ancestry controls	NA	4p15.2	NR	rs10027350-?	NR	6E-6		0.0417	[0.024-0.06] unit increase	Illumina [at least 560000] (imputed)	N
776	chr4	25144969	25144970	rs28404798	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.2	NR	rs28404798-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
777	chr4	25172558	25172559	rs112467115	32701715	Zhang Y	2020-07-21	J Bone Joint Surg Am	PPARGC1B Is Associated with Nontraumatic Osteonecrosis of the Femoral Head: A Genomewide Association Study on a Chart-Reviewed Cohort.	Nontraumatic osteonecrosis of the femoral head	118 European ancestry cases, 56,811 European ancestry controls	NA	4p15.2	PI4K2B	rs112467115-T	0.02	8E-6		3.42	[1.99-5.87]	Illumina [3905175] (imputed)	N
777	chr4	25201317	25201318	rs73252553	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	4p15.2	PI4K2B	rs73252553-A	0.9	6E-8				Illumina [NR] (imputed)	N
777	chr4	25201317	25201318	rs73252553	27028160	Sherva R	2016-03-30	JAMA Psychiatry	Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks.	Cannabis dependence symptom count	Up to 6,000 African American ancestry individuals, 8,754 European ancestry individuals	At least 1,893 European ancestry individuals	4p15.2	PI4K2B	rs73252553-A	0.9	5E-6	(EA)			Illumina [NR] (imputed)	N
777	chr4	25222178	25222179	rs75240453	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.2	NR	rs75240453-?	NR	3E-7		5.098	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
777	chr4	25233185	25233186	rs55704346	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Tonsillectomy	60,098 European ancestry cases, 113,323 European ancestry controls	NA	4p15.2	NR	rs55704346-?	NR	2E-7		0.0427	[0.027-0.059] unit increase	Illumina [at least 560000] (imputed)	N
777	chr4	25240549	25240550	rs191451927	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Helicobacter abundance in stool	5,959 Finnish ancestry individuals	NA	4p15.2		rs191451927-G	0.0262403	5E-8		0.0811872	[0.052-0.11] unit increase	Illumina [7980478] (imputed)	N
777	chr4	25264372	25264373	rs28612433	30563984	Hawi Z	2018-12-18	Transl Psychiatry	A case-control genome-wide association study of ADHD discovers a novel association with the tenascin R (TNR) gene.	Attention deficit hyperactivity disorder	480 European ancestry cases, 1,208 European ancestry controls	NA	4p15.2	PI4K2B	rs28612433-?	NR	1E-6		1.8570102	[1.45-2.38]	Illumina [5407269] (imputed)	N
777	chr4	25275647	25275648	rs16876969	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.2	NR	rs16876969-T	0.0122	1E-8	(CSTA)	0.03139	NR unit increase	Illumina [1671387] (imputed)	N
778	chr4	25332403	25332404	rs138436261	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4p15.2	NR	rs138436261-?	NR	3E-7		0.156528	[0.097-0.216] unit increase	Affymetrix [9658292] (imputed)	N
778	chr4	25342605	25342606	rs56203712	33830993	Johnston KJA	2021-04-08	PLoS Genet	Sex-stratified genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4p15.2	ZCCHC4	rs56203712-?	NR	1E-11			[NR]	NR [NR] (imputed)	N
778	chr4	25342605	25342606	rs56203712	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.2	NR	rs56203712-?	NR	5E-31				Affymetrix [~ 8270000] (imputed)	N
778	chr4	25363470	25363471	rs36038307	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p15.2	ZCCHC4	rs36038307-G	0.0653474858190366	1E-7	(F_Rhodospirillaceae_RNT)	0.374616	[0.24-0.51] unit decrease	Illumina [7711310] (imputed)	N
778	chr4	25363470	25363471	rs36038307	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p15.2	ZCCHC4	rs36038307-G	0.0651122764409526	3E-8	(O_Rhodospirillales_RNT)	0.388036	[0.25-0.53] unit decrease	Illumina [7711310] (imputed)	N
778	chr4	25377776	25377777	rs572628404	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum alkaline phosphatase levels	344,292 European ancestry individuals, 118,886 East Asian ancestry individuals	NA	4p15.2		rs572628404-C	NR	3E-8		0.0157	[0.01-0.021] unit decrease	Affymetrix, Illumina [20533886] (imputed)	N
778	chr4	25379225	25379226	rs6830160	29274321	Chung J	2017-12-20	Alzheimers Dement	Genome-wide association study of Alzheimer's disease endophenotypes at prediagnosis stages.	Logical memory (immediate recall) in normal cognition	305 European ancestry cognitively normal individuals	NA	4p15.2	ANAPC4, PI4K2B, ZCCHC4	rs6830160-T	0.09	1E-7		0.5	[0.32-0.68] unit increase	Illumina [7797526] (imputed)	N
778	chr4	25403265	25403266	rs16877106	20966902	Croteau-Chonka DC	2010-10-21	Obesity (Silver Spring)	Genome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.	Weight	1,780 Filipino ancestry females	NA	4p15.2	ANAPC4	rs16877106-C	0.96	1E-6		5.42	[3.22-7.62] kg increase	Affymetrix [2073674] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	8E-14		0.0182	[0.013-0.023] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum uric acid levels	343,836 European ancestry individuals, 129,405 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	6E-9		0.014	[0.0093-0.0187] unit decrease	Affymetrix, Illumina [20535231] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hemoglobin A1c levels	344,182 European ancestry individuals, 71,221 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	5E-9		0.0159	[0.011-0.021] unit decrease	Affymetrix, Illumina [20525742] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Height	360,388 European ancestry individuals, 165,056 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	2E-15		0.0156	[0.012-0.02] unit increase	Affymetrix, Illumina [20538915] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	1E-9		0.0172	[0.012-0.023] unit decrease	Affymetrix, Illumina [20537302] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.2		rs34811474-A	NR	1E-31		0.0323	[0.027-0.038] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4p15.2	ANAPC4	rs34811474-G	0.768341	1E-10		0.0155497	[0.011-0.02] unit decrease	NR [16516521] (imputed)	N
778	chr4	25408837	25408838	rs34811474	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	186,825 British ancestry men	NA	4p15.2	ANAPC4	rs34811474-A	NR	1E-9		0.0221804	[0.015-0.029] unit increase	Affymetrix [321114] (imputed)	N
778	chr4	25408837	25408838	rs34811474	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Urate levels	342,087 European ancestry individuals, 6,011 African ancestry individuals, 7,328 South Asian ancestry individuals	NA	4p15.2	NR	rs34811474-A	NR	4E-9		0.0167	[0.011-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	33414549	Demange PA	2021-01-07	Nat Genet	Investigating the genetic architecture of noncognitive skills using GWAS-by-subtraction.	Cognitive aspects of educational attainment	257,700 European ancestry individuals	NA	4p15.2	NR	rs34811474-G	0.2167	3E-15		0.060477756	[0.045-0.075] unit decrease	Affymetrix, Illumina, Perlegen [7305956] (imputed)	N
778	chr4	25408837	25408838	rs34811474	32895543	de la Fuente J	2020-09-07	Nat Hum Behav	A general dimension of genetic sharing across diverse cognitive traits inferred from molecular data.	Verbal-numerical reasoning	171,304 British ancestry individuals	NA	4p15.2		rs34811474-?	NR	2E-9				NR [7857346] (imputed)	N
778	chr4	25408837	25408838	rs34811474	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4p15.2	ANAPC4	rs34811474-G	0.76914	8E-10		0.0102115	[0.007-0.0135] unit increase	Affymetrix [12370749]	N
778	chr4	25408837	25408838	rs34811474	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.2	ANAPC4	rs34811474-G	0.76914	2E-24		0.0165964	[0.013-0.02] unit increase	Affymetrix [12370749]	N
778	chr4	25408837	25408838	rs34811474	32317632	van de Vegte YJ	2020-04-21	Nat Commun	Genome-wide association studies and Mendelian randomization analyses for leisure sedentary behaviours.	Leisure sedentary behaviour (television watching)	408,815 European ancestry individuals	NA	4p15.2	NR	rs34811474-?		2E-9		0.0152829	[0.01-0.02] unit increase	Affymetrix [19400418] (imputed)	N
778	chr4	25408837	25408838	rs34811474	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	61,792 British ancestry female cases, 156,554 British ancestry female controls	NA	4p15.2	NR	rs34811474-G	NR	1E-8		0.009192	[0.006-0.0123] unit increase	NR [11010159] (imputed)	N
778	chr4	25408837	25408838	rs34811474	32060260	Campos AI	2020-02-14	Nat Commun	Insights into the aetiology of snoring from observational and genetic investigations in the UK Biobank.	Snoring	152,302 British ancestry cases, 256,015 British ancestry controls	NA	4p15.2	NR	rs34811474-G	NR	1E-10		0.00799627	[0.0056-0.0104] unit increase	NR [11010159] (imputed)	N
778	chr4	25408837	25408838	rs34811474	31501611	Karlsson T	2019-09-09	Nat Med	Contribution of genetics to visceral adiposity and its relation to cardiovascular and metabolic disease.	Predicted visceral adipose tissue	325,153 British ancestry individuals	NA	4p15.2	NR	rs34811474-A	0.232	7E-11		0.019088773	[0.013-0.025] unit decrease	Affymetrix [10549349] (imputed)	N
778	chr4	25408837	25408838	rs34811474	31194737	Johnston KJA	2019-06-13	PLoS Genet	Genome-wide association study of multisite chronic pain in UK Biobank.	Multisite chronic pain	387,649 British ancestry individuals	NA	4p15.2	ANAPC4	rs34811474-G	0.2285	3E-11		0.0192	[0.014-0.025] unit increase	NR [NR]	N
778	chr4	25408837	25408838	rs34811474	30804565	Jansen PR	2019-02-25	Nat Genet	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.	Snoring	359,916 European ancestry individuals	NA	4p15.2	NR	rs34811474-G	0.7692	4E-11		1.0416667	[1.03-1.05]	Affymetrix, Illumina [10862568] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30664745	Tachmazidou I	2019-01-21	Nat Genet	Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.	Osteoarthritis	77,052 European ancestry cases, 378,169 European ancestry controls	NA	4p15.2	NR	rs34811474-G	0.77	2E-9		1.04	[1.03-1.05]	Affymetrix, Illumina [up to 17000000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p15.2	ANAPC4	rs34811474-G	0.76668	3E-9		0.012939	[0.0087-0.0172] unit increase	NR [13737936] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	White blood cell count	approximately 444,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	2E-8				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	6E-8				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Lung function (FVC)	approximately 372,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	4E-11				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	6E-18				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	2E-8				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.2		rs34811474-?	NR	1E-32				NR [~ 8900000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30573740	Yap CX	2018-12-20	Nat Commun	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.	Male-pattern baldness	205,327 European ancestry males	NA	4p15.2	NR	rs34811474-A	0.231998	4E-9		0.0214241	[0.014-0.029] unit increase	NR [19129689] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.2	NA	rs34811474-A	0.2224	9E-38		0.0293	[0.025-0.034] unit decrease	NR [~ 27400000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4p15.2	NA	rs34811474-A	0.2224	9E-38		0.0293	[0.025-0.034] unit decrease	NR [~ 27400000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	374,756 European ancestry male individuals	NA	4p15.2	NA	rs34811474-A	0.2224	9E-38		0.0293	[0.025-0.034] unit decrease	NR [~ 27400000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30108127	Hoffmann TJ	2018-08-14	Genetics	A Large Multi-ethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci.	Body mass index	315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals	431,743 European ancestry individuals, 9,275 South Asian ancestry individuals, 8,261 African British individuals, 1,822 East Asian ancestry individuals, 7,620 individuals	4p15.2	NR	rs34811474-G	NR	2E-9		0.02	[NR] unit increase	Affymetrix [at least 28613428] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.2	Intergenic	rs34811474-A	0.2165	7E-9	(MTAG)	0.0126	[0.0083-0.0169] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.2	Intergenic	rs34811474-A	0.2161	1E-13	(MTAG)	0.015	[0.011-0.019] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs34811474-A	0.2242	3E-9		0.0104	[0.0071-0.0137] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.2	Intergenic	rs34811474-A	0.2242	7E-15	(MTAG)	0.0126	[0.0095-0.0157] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.2	Intergenic	rs34811474-A	0.2329	2E-18	(MTAG)	0.0242	[0.019-0.03] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance	257,841 European ancestry individuals	NA	4p15.2	Intergenic	rs34811474-A	0.2329	1E-15		0.0276	[0.021-0.034] unit increase	Affymetrix, Illumina [10100000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	29942086	Savage JE	2018-06-25	Nat Genet	Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.	Intelligence	269,867 European ancestry individuals	NA	4p15.2	NR	rs34811474-A	NR	7E-16		8.068	z-score increase	Affymetrix, Illumina [9295118] (imputed)	N
778	chr4	25408837	25408838	rs34811474	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.2	ANAPC4	rs34811474-A	NR	7E-9		5.797	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
778	chr4	25408837	25408838	rs34811474	29326435	Hill WD	2018-01-11	Mol Psychiatry	A combined analysis of genetically correlated traits identifies 187 loci and a role for neurogenesis and myelination in intelligence.	Intelligence (MTAG)	120,934 British ancestry individuals, 127,548 individuals	NA	4p15.2	ANAPC4	rs34811474-A	NR	2E-10		0.023438785	[0.016-0.031] unit increase	Affymetrix [NR]	N
778	chr4	25408837	25408838	rs34811474	29273807	Turcot V	2017-12-22	Nat Genet	Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity.	Body mass index	up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals	up to 196,766 European ancestry individuals	4p15.2	ANAPC4	rs34811474-G	0.7899	3E-30		0.0244	[0.02-0.029] unit increase	Illumina [246328]	N
778	chr4	25417243	25417244	rs3816587	17554300	Wellcome Trust Case Control Consortium	2007-06-07	Nature	Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.	Rheumatoid arthritis	1,860 European ancestry cases, 2,938 European ancestry controls	NA	4p15.2	NR	rs3816587-C	0.41	9E-6		1.09	[0.96-1.25]	Affymetrix [469557]	N
779	chr4	25443603	25443604	rs113082832	27015805	Pilling LC	2016-03-23	Aging (Albany NY)	Human longevity is influenced by many genetic variants: evidence from 75,000 UK Biobank participants.	Parental longevity (combined parental age at death)	45,627 middle-aged British individuals	NA	4p15.2	NR	rs113082832-?	NR	5E-6		0.074566	[0.042-0.107] unit increase	Affymetrix [9658292] (imputed)	N
779	chr4	25446786	25446787	rs4697572	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota abundance (genus Erysipelatoclostridium id.11381)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p15.2		rs4697572-A	NR	8E-7		4.945535	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
779	chr4	25533553	25533554	rs4697584	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.2	NR	rs4697584-?	NR	1E-28				Affymetrix [NR]	N
779	chr4	25543293	25543295	rs35690270	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4p15.2	NR	rs35690270-?	NR	6E-6		0.0964	[0.054-0.138] unit increase	Illumina [at least 560000] (imputed)	N
780	chr4	25584200	25584201	rs2308974	33208821	Ishida S	2020-11-18	Commun Biol	Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota.	Gut microbiota relative abundance (Eubacterium belonging to family Erysipelotrichaceae)	1,068 Japanese ancestry individuals	NA	4p15.2	intergenic	rs2308974-G	0.06	7E-6	(male)	1.15	[0.66-1.64] unit increase	Illumina [6380737] (imputed)	N
780	chr4	25595529	25595530	rs1402031	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Eotaxin levels	8,153 Finnish ancestry individuals	NA	4p15.2	NR	rs1402031-C	NR	9E-6		0.113	[0.063-0.163] SD units increase	NR [10700000] (imputed)	N
780	chr4	25605035	25605036	rs62409395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.2		rs62409395-T	0.7755	4E-8		0.0101	[0.0066-0.0136] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
780	chr4	25605035	25605036	rs62409395	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.2	Intergenic	rs62409395-T	0.7755	3E-10	(MTAG)	0.0106	[0.0073-0.0139] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
780	chr4	25605035	25605036	rs62409395	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	General cognitive ability	up to 300,486 European ancestry individuals	NA	4p15.2	NR	rs62409395-?	NR	9E-6		4.437	z-score increase	Affymetrix, Illumina [at least 2500000] (imputed)	N
780	chr4	25640371	25640372	rs115971165	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p15.2	Intergenic	rs115971165-T	0.985	8E-7	(AA)	0.415	NR unit increase	Illumina [NR] (imputed)	N
781	chr4	25810095	25810096	rs959903	20708005	Chalasani N	2010-08-10	Gastroenterology	Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.	Non-alcoholic fatty liver disease histology (other)	236 European ancestry cases	NA	4p15.2	23231	rs959903-A	0.29	7E-6	(Ballon TT)	3.81	[NR] unit increase	Illumina [324623]	N
782	chr4	25834669	25834670	rs139989095	28234671	Nandakumar P	2017-07-01	J Hypertens	Rare coding variants associated with blood pressure variation in 15 914 individuals of African ancestry.	Systolic blood pressure	11,156 African American individuals, 4,758 African ancestry individuals	NA	4p15.2	SEL1L3	rs139989095-?	0.0000628	3E-8		49.02	[31.63-66.41] unit increase	Illumina [105487]	N
782	chr4	25942750	25942751	rs7654585	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	C4orf52	rs7654585-A	0.374	2E-7	(WC change )	0.04	[NR] cm/y increase	Illumina [899892]	N
783	chr4	25952513	25952514	rs4692190	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.2		rs4692190-?	NR	4E-8				NR [~ 8900000] (imputed)	N
783	chr4	25965796	25965797	rs2061224	33462485	Kurilshikov A	2021-01-18	Nat Genet	Large-scale association analyses identify host factors influencing human gut microbiome composition.	Gut microbiota alpha diversity (Inverse Simpson index)	14,306 European ancestry individuals, 811 Korean ancestry individuals, 1,097 Hispanic individuals, 114 African American individuals, 481 Middle Eastern ancestry individuals, 1,531 unknown and other admixed ancestry individuals	NA	4p15.2		rs2061224-A	NR	9E-6		4.450853	z score decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr4	25991627	25991628	rs4406006	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	SLC34A2	rs4406006-?	NR	7E-6	(LPE 16:0)	0.1680815	[0.095-0.242] unit decrease	Affymetrix [at least 2500000] (imputed)	N
783	chr4	26003645	26003646	rs71610881	27515689	Kerns SL	2016-07-20	EBioMedicine	Meta-analysis of Genome Wide Association Studies Identifies Genetic Markers of Late Toxicity Following Radiotherapy for Prostate Cancer.	Response to radiotherapy in prostate cancer (overall toxicity)	1,346 European ancestry individuals	NA	4p15.2	Intergenic	rs71610881-A	0.06	5E-7		0.6	[0.36-0.83] unit increase	NR [~ 38000000] (imputed)	N
783	chr4	26006132	26006133	rs1912897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	SMIM20	rs1912897-T	NR	3E-8		0.0192775	[0.012-0.026] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26006132	26006133	rs1912897	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	SMIM20	rs1912897-T	NR	2E-8		0.019509	[0.013-0.026] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26007089	26007090	rs7692990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	SMIM20	rs7692990-C	NR	4E-10		0.0177793	[0.012-0.023] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26007089	26007090	rs7692990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	SMIM20	rs7692990-C	NR	2E-10		0.0181203	[0.013-0.024] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26007089	26007090	rs7692990	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	SMIM20	rs7692990-C	NR	4E-8		0.01569	[0.01-0.021] unit increase	Affymetrix [321114] (imputed)	N
783	chr4	26016802	26016803	rs1512102	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Height	approximately 458,000 European ancestry individuals	NA	4p15.2		rs1512102-?	NR	1E-9				NR [~ 8900000] (imputed)	N
783	chr4	26025641	26025642	rs1567651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs1567651-A	NR	1E-8		0.0178583	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26025641	26025642	rs1567651	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs1567651-A	NR	7E-9		0.0180967	[0.012-0.024] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26025739	26025740	rs5025813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs5025813-G	NR	1E-11		0.0205686	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26025739	26025740	rs5025813	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs5025813-G	NR	7E-12		0.0208577	[0.015-0.027] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26031964	26031965	rs6448428	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs6448428-C	NR	3E-8		0.015947	[0.01-0.022] unit decrease	Affymetrix [319769] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in small HDL	115,082 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83041	5E-10		0.0325615	[0.022-0.043] unit decrease	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Triglycerides to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83041	1E-8		0.0299835	[0.02-0.04] unit decrease	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Ratio of triglycerides to phosphoglycerides	115,006 European ancestry individuals	NA	4p15.2		rs1022186-C	0.830393	3E-8		0.0285059	[0.018-0.039] unit decrease	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83041	7E-9		0.030419	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Phospholipids to total lipids ratio in large VLDL	115,071 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83042	2E-8		0.030374	[0.02-0.041] unit decrease	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl esters to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83041	6E-9		0.0310784	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
783	chr4	26037387	26037388	rs1022186	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesterol to total lipids ratio in medium HDL	115,082 European ancestry individuals	NA	4p15.2		rs1022186-C	0.83041	2E-9		0.0317507	[0.021-0.042] unit increase	NR [11722792] (imputed)	N
783	chr4	26047615	26047616	rs73243877	35213538	Richardson TG	2022-02-25	PLoS Biol	Characterising metabolomic signatures of lipid-modifying therapies through drug target mendelian randomisation.	Cholesteryl ester levels in HDL	115,082 European ancestry individuals	NA	4p15.2		rs73243877-A	0.83288	3E-8		0.027749	[0.018-0.038] unit increase	NR [11722792] (imputed)	N
783	chr4	26047615	26047616	rs73243877	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	HDL cholesterol	315,133 European ancestry individuals, 74,970 East Asian ancestry individuals	NA	4p15.2		rs73243877-G	NR	2E-16		0.025	[0.019-0.031] unit decrease	Affymetrix, Illumina [20525311] (imputed)	N
783	chr4	26047615	26047616	rs73243877	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p15.2	SMIM20	rs73243877-A	0.831862	1E-27		0.029039	[0.024-0.034] unit decrease	Affymetrix [NR] (imputed)	N
783	chr4	26047615	26047616	rs73243877	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p15.2	SMIM20	rs73243877-A	0.831911	2E-23		0.0253996	[0.02-0.03] unit increase	Affymetrix [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Triglycerides	343,992 European ancestry individuals, 111,667 East Asian ancestry individuals	NA	4p15.2		rs10713774-A	NR	6E-20		0.0286	[0.023-0.035] unit increase	Affymetrix, Illumina [20531459] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p15.2	intergenic	rs10713774-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p15.2	intergenic	rs10713774-?	NR	1E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p15.2	intergenic	rs10713774-?	NR	5E-6	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p15.2	intergenic	rs10713774-?	NR	3E-6				Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p15.2	intergenic	rs10713774-?	NR	2E-8				Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df)	44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers	71,281 European ancestry regular drinkers, 711 African American or Afro-Caribbean regular drinkers, 35,088 Asian ancestry regular drinkers, 3,742 Hispanic regular drinkers, 36,267 European ancestry non-regular drinkers, 1,317 African American or Afro-Caribbean non-regular drinkers, 6,152 Asian ancestry non-regular drinkers, 2,880 Hispanic non-regular drinkers	4p15.2	intergenic	rs10713774-?	NR	1E-7	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p15.2	intergenic	rs10713774-?	NR	7E-9				Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df)	56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers	107,548 European ancestry current drinkers, 2,028 African American or Afro-Caribbean current drinkers, 41,240 Asian ancestry current drinkers, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals, 29,438 European ancestry non-drinkers, 2,447 African American or Afro-Caribbean non-drinkers, 67,191 Asian ancestry non-drinkers, 7,092 Hispanic non-drinkers, 1,668 Brazilian ancestry non-drinkers	4p15.2	intergenic	rs10713774-?	NR	4E-8	(EA)			Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p15.2	intergenic	rs10713774-?	NR	8E-7		0.007	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30698716	de Vries PS	2019-01-29	Am J Epidemiol	Multi-Ancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.	HDL cholesterol levels in current drinkers	56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals	107,548 European ancestry individuals, 2,028 African American or Afro-Caribbean individuals, 41,240 Asian ancestry individuals, 6,622 Hispanic individuals, 1,984 Brazilian ancestry individuals	4p15.2	intergenic	rs10713774-?	NR	6E-6	(EA)	0.008	NR unit decrease	Affymetrix, Illumina [NR] (imputed)	N
783	chr4	26050450	26050451	rs10713774	30275531	Klarin D	2018-10-01	Nat Genet	Genetics of blood lipids among ~300,000 multi-ethnic participants of the Million Veteran Program.	HDL cholesterol	215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals	Up to 319,677 individuals	4p15.2	intergenic	rs10713774-?	0.188	1E-10		0.0223	[0.015-0.029] mg dl-1 decrease	Affymetrix [up to 31400000] (imputed)	N
783	chr4	26062989	26062990	rs10019888	30926973	Bentley AR	2019-03-29	Nat Genet	Multi-ancestry genome-wide gene-smoking interaction study of 387,272 individuals identifies new loci associated with serum lipids.	HDL cholesterol levels	up to 23,761 African ancestry individuals, 13,171 Asian ancestry individuals, up to 90,272 European ancestry individuals, 6,620 Hispanic individuals	NA	4p15.2		rs10019888-A	0.8233	2E-7		0.0077	[0.0048-0.0106] unit increase	Affymetrix, Illumina, Perlegen [NR] (imputed)	N
783	chr4	26062989	26062990	rs10019888	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4p15.2	NR	rs10019888-A	0.8144	6E-18		0.0201	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
783	chr4	26062989	26062990	rs10019888	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4p15.2	NA	rs10019888-A	0.8133	8E-20		0.0208	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
783	chr4	26062989	26062990	rs10019888	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4p15.2	NR	rs10019888-A	0.8133	8E-20		0.0208	[0.016-0.025] unit decrease	NR [~ 27400000] (imputed)	N
783	chr4	26062989	26062990	rs10019888	24097068	Willer CJ	2013-10-06	Nat Genet	Discovery and refinement of loci associated with lipid levels.	HDL cholesterol	94,595 European ancestry individuals	93,982 European ancestry individuals	4p15.2	C4orf52	rs10019888-G	0.18	5E-8		0.027	[NR] unit decrease	NR [NR] (imputed)	N
783	chr4	26066370	26066371	rs6810498	24166409	Gelernter J	2014-01-01	Mol Psychiatry	Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.	Alcohol dependence	2,415 African American cases, 1,798 African American controls, 2,669 European ancestry cases, 2,002 European ancestry controls	324 African American cases, 327 African American controls, 2,269 European ancestry cases, 2,975 European ancestry controls	4p15.2	Intergenic	rs6810498-A	0.265	2E-6	(AA)	1.44	NR (AA, GCD Discovery)	Illumina [up to 10421983] (imputed)	N
783	chr4	26066862	26066863	rs6448429	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein A1 levels	393,193 European ancestry individuals	NA	4p15.2	RBPJ	rs6448429-C	0.833887	6E-17		0.02225	[0.017-0.027] unit increase	Affymetrix [NR] (imputed)	N
783	chr4	26069121	26069121	rs765088453	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs765088453-GT	NR	6E-9		0.0231291	[0.015-0.031] unit decrease	Affymetrix [321788] (imputed)	N
783	chr4	26069121	26069121	rs765088453	32154731	Ripatti P	2020-03-10	Circ Genom Precis Med	Polygenic Hyperlipidemias and Coronary Artery Disease Risk.	Triglyceride levels	324,694 British ancestry individuals	NA	4p15.2	RBPJ	rs765088453-?	NR	1E-16		0.0294	[0.023-0.036] unit increase	Affymetrix [5701386] (imputed)	N
783	chr4	26070692	26070694	rs35048767	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	4p15.2	NR	rs35048767-?		4E-6		2.18	[1.57-3.04]	Illumina [539473] (imputed)	N
783	chr4	26075240	26075240	rs372081641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs372081641-CAA	NR	4E-19		0.0332469	[0.026-0.041] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26075240	26075240	rs372081641	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs372081641-CAA	NR	3E-19		0.0334014	[0.026-0.041] unit increase	Affymetrix [319769] (imputed)	N
783	chr4	26079993	26079994	rs2048508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p15.2	NR	rs2048508-C	NR	4E-17		0.0263	[0.02-0.032] unit increase	Affymetrix [9000000] (imputed)	N
783	chr4	26079993	26079994	rs2048508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4p15.2	NR	rs2048508-C	NR	1E-13		0.0243	[0.018-0.031] unit decrease	Affymetrix [9000000] (imputed)	N
783	chr4	26079993	26079994	rs2048508	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Apolipoprotein A1 levels	311,601 European ancestry individuals, 5,550 African ancestry individuals, 6,682 South Asian ancestry individuals	NA	4p15.2	NR	rs2048508-C	NR	9E-10		0.0201	[0.014-0.027] unit decrease	Affymetrix [9000000] (imputed)	N
783	chr4	26080548	26080549	rs2137234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs2137234-C	NR	9E-12		0.0245767	[0.018-0.032] unit increase	Affymetrix [321114] (imputed)	N
783	chr4	26080548	26080549	rs2137234	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs2137234-C	NR	4E-12		0.0250884	[0.018-0.032] unit increase	Affymetrix [321169] (imputed)	N
783	chr4	26080548	26080549	rs2137234	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Apolipoprotein B levels	439,214 European ancestry individuals	NA	4p15.2	RBPJ	rs2137234-T	0.804718	8E-9		0.0151513	[0.01-0.02] unit decrease	Affymetrix [NR] (imputed)	N
783	chr4	26080548	26080549	rs2137234	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p15.2		rs2137234-?	NR	3E-15				NR [~ 8900000] (imputed)	N
783	chr4	26081816	26081817	rs73243890	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p15.2	NR	rs73243890-?	NR	9E-15				Affymetrix [~ 8270000] (imputed)	N
784	chr4	26085367	26085368	rs10017363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs10017363-T	NR	2E-13		0.0208149	[0.015-0.026] unit increase	Affymetrix [319769] (imputed)	N
784	chr4	26085367	26085368	rs10017363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs10017363-T	NR	8E-14		0.0211992	[0.016-0.027] unit increase	Affymetrix [319769] (imputed)	N
784	chr4	26085367	26085368	rs10017363	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs10017363-T	NR	1E-9		0.0174642	[0.012-0.023] unit increase	Affymetrix [321169] (imputed)	N
784	chr4	26085510	26085511	rs10517086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs10517086-A	NR	8E-14		0.0228513	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
784	chr4	26085510	26085511	rs10517086	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs10517086-A	NR	4E-14		0.0231472	[0.017-0.029] unit increase	Affymetrix [319769] (imputed)	N
784	chr4	26085510	26085511	rs10517086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Triglyceride levels	342,233 European ancestry individuals, 6,014 African ancestry individuals, 7,330 South Asian ancestry individuals	NA	4p15.2	NR	rs10517086-A	NR	2E-13		0.0191	[0.014-0.024] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26085510	26085511	rs10517086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p15.2	NR	rs10517086-A	NR	9E-13		0.0193	[0.014-0.025] unit decrease	Affymetrix [9000000] (imputed)	N
784	chr4	26085510	26085511	rs10517086	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	High density lipoprotein cholesterol levels	313,372 European ancestry individuals, 5,573 African ancestry individuals, 6,689 South Asian ancestry individuals	NA	4p15.2	NR	rs10517086-A	NR	3E-10		0.017	[0.012-0.022] unit decrease	Affymetrix [9000000] (imputed)	N
784	chr4	26085510	26085511	rs10517086	19430480	Barrett JC	2009-05-10	Nat Genet	Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes.	Type 1 diabetes	7,514 European ancestry cases, 9,045 European ancestry controls	4,267 European ancestry cases, 4,670 European ancestry controls, 4,342 European ancestry trios from 2,319 families	4p15.2	intergenic	rs10517086-A	0.30	5E-10		1.09	[1.02-1.17]	Affymetrix, Illumina [841622] (imputed)	N
784	chr4	26086568	26086569	rs17630466	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	4p15.2	RBPJ	rs17630466-?	NR	6E-13				Illumina [129464] (imputed)	N
784	chr4	26088127	26088128	rs16878091	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Rheumatoid arthritis	15,523 European ancestry cases, 22,308 European ancestry controls	NA	4p15.2	LINC02357	rs16878091-A	0.294	3E-13		1.1362746		Illumina [252970]	N
784	chr4	26088127	26088128	rs16878091	30572963	Marquez A	2018-12-20	Genome Med	Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations.	Autoimmune traits (pleiotropy)	11,489 European ancestry cases with celiac disease, 15,523 European ancestry cases with rheumatoid arthritis, 3,477 European ancestry cases with systemic sclerosis, 6,670 European ancestry cases with type 1 diabetes, 22,308 European ancestry controls	NA	4p15.2	RBPJ	rs16878091-A	NA	3E-12				Illumina [252970]	N
784	chr4	26090374	26090375	rs7441808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls, 3,103 East Asian ancestry cases, 175,623 East Asian ancestry controls	NA	4p15.2		rs7441808-G	NR	2E-16		0.0817	[0.062-0.101] unit increase	Affymetrix, Illumina [15248280] (imputed)	N
784	chr4	26090374	26090375	rs7441808	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Hypothyroidism	30,155 European ancestry cases, 379,986 European ancestry controls, 1,114 East Asian ancestry cases, 172,656 East Asian ancestry controls	NA	4p15.2		rs7441808-G	NR	5E-12		0.0766	[0.055-0.098] unit increase	Affymetrix, Illumina [25801083] (imputed)	N
784	chr4	26090374	26090375	rs7441808	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Eosinophil counts	474,237 European ancestry individuals	NA	4p15.2	NR	rs7441808-G	0.301163	1E-10		0.013917	[0.0097-0.0182] SD unit increase	Affymetrix, Illumina [50000174] (imputed)	N
784	chr4	26090374	26090375	rs7441808	32581359	Saevarsdottir S	2020-06-24	Nature	FLT3 stop mutation increases FLT3 ligand level and risk of autoimmune thyroid disease.	Autoimmune thyroid disease	30,234 European ancestry cases, 724,172 European ancestry controls	NA	4p15.2	NR	rs7441808-G	0.291	1E-14		1.08	[NR]	Affymetrix, Illumina [42900000] (imputed)	N
784	chr4	26090374	26090375	rs7441808	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (thyroid preparations)	24,832 European ancestry cases, 280,750 European ancestry controls	NA	4p15.2	RBPJ	rs7441808-G	0.301669	2E-16		0.08148547	[0.062-0.101] unit increase	Affymetrix [7288503] (imputed)	N
784	chr4	26090374	26090375	rs7441808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Hypothyroidism	approximately 459,000 European ancestry individuals	NA	4p15.2		rs7441808-?	NR	4E-16				NR [~ 8900000] (imputed)	N
784	chr4	26090374	26090375	rs7441808	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Autoimmune traits	approximately 459,000 European ancestry individuals	NA	4p15.2		rs7441808-?	NR	5E-13				NR [~ 8900000] (imputed)	N
784	chr4	26090861	26090862	rs932036	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Eosinophil counts	approximately 440,000 European ancestry individuals	NA	4p15.2		rs932036-?	NR	1E-9				NR [~ 8900000] (imputed)	N
784	chr4	26098809	26098810	rs6448432	24449572	Orozco G	2014-01-01	Arthritis Rheumatol	Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.	Rheumatoid arthritis	3,034 European ancestry cases, 5,271 European ancestry controls	4,726 European ancestry cases, 2,625 European ancestry controls	4p15.2	RBPJ	rs6448432-?		4E-7		1.19	[1.11-1.28]	Affymetrix, Illumina [1831729] (imputed)	N
784	chr4	26099651	26099652	rs7678753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs7678753-A	NR	2E-9		0.0175303	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
784	chr4	26099651	26099652	rs7678753	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs7678753-A	NR	9E-10		0.0177566	[0.012-0.023] unit decrease	Affymetrix [319769] (imputed)	N
784	chr4	26104112	26104113	rs12506688	24532676	Kim K	2014-02-14	Ann Rheum Dis	High-density genotyping of immune loci in Koreans and Europeans identifies eight new rheumatoid arthritis risk loci.	Rheumatoid arthritis (ACPA-positive)	2,234 Korean ancestry cases, 7,065 Korean ancestry controls, 10,288 European ancestry cases, 35,502 European ancestry controls	NA	4p15.2	C4orf52, RBPJ	rs12506688-A	0.3	8E-14		1.15	[1.11-1.19]	Illumina [133816] (imputed)	N
784	chr4	26104112	26104113	rs12506688	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis (ACPA-positive)	up to 9,585 European ancestry cases, up to 33,742 European ancestry controls	NA	4p15.2	RBPJ	rs12506688-A	NR	6E-13		0.86422956	(Immunochip only)	Illumina [129464] (imputed)	N
784	chr4	26104112	26104113	rs12506688	23143596	Eyre S	2012-12-01	Nat Genet	High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis.	Rheumatoid arthritis	up to 13,838 European ancestry cases, up to 33,742 European ancestry controls	NA	4p15.2	RBPJ	rs12506688-A	0.3	4E-10		1.1337		Illumina [129464] (imputed)	N
784	chr4	26108196	26108197	rs874040	20453842	Stahl EA	2010-05-09	Nat Genet	Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.	Rheumatoid arthritis	5,539 European ancestry cases, 20,169 European ancestry controls	6,768 European ancestry cases, 8,806 European ancestry controls	4p15.2	RBPJ	rs874040-C	0.30	1E-16		1.14	[NR]	Affymetrix, Illumina [~ 2716259] (imputed)	N
784	chr4	26110724	26110725	rs538635545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs538635545-C	NR	2E-9		0.0185277	[0.013-0.025] unit increase	Affymetrix [321114] (imputed)	N
784	chr4	26110724	26110725	rs538635545	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs538635545-C	NR	3E-10		0.0193977	[0.013-0.025] unit increase	Affymetrix [321169] (imputed)	N
784	chr4	26111592	26111593	rs34046593	33310728	Ha E	2020-12-11	Ann Rheum Dis	Large-scale meta-analysis across East Asian and European populations updated genetic architecture and variant-driven biology of rheumatoid arthritis, identifying 11 novel susceptibility loci.	Rheumatoid arthritis	14,361 European ancestry cases, 43,923 European ancestry controls, 8,267 East Asian ancestry cases, 244,741 East Asian ancestry controls	NA	4p15.2		rs34046593-A	NR	7E-17		1.15	[1.12-1.19]	NR [13810676] (imputed)	N
784	chr4	26112845	26112846	rs1877384	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs1877384-A	NR	2E-8		0.0163946	[0.011-0.022] unit decrease	Affymetrix [321169] (imputed)	N
784	chr4	26120000	26120001	rs11933540	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p15.2	C4orf52	rs11933540-T	NR	2E-15		0.0682136	[-0.10195-0.23838] unit decrease	Illumina [8380626] (imputed)	N
784	chr4	26120000	26120001	rs11933540	30423114	Laufer VA	2018-11-13	Hum Mol Genet	Genetic Influences on Susceptibility to Rheumatoid Arthritis in African-Americans.	Rheumatoid arthritis	916 African American cases, 1,392 African American controls,	4,873 East Asian ancestry cases, 17,641 East Asian ancestry controls, 19,234 European ancestry cases, 61,654 European ancestry controls	4p15.2	C4orf52	rs11933540-T	0.69	1E-16	(EA)	0.14086	[0.11-0.17] unit decrease	Illumina [8380626] (imputed)	N
784	chr4	26120000	26120001	rs11933540	24390342	Okada Y	2013-12-25	Nature	Genetics of rheumatoid arthritis contributes to biology and drug discovery.	Rheumatoid arthritis	up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls	up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls	4p15.2	C4orf52	rs11933540-C	0.31	1E-16	(EA)	1.15	[1.11-1.19]	Affymetrix, Illumina [up to 9739303] (imputed)	N
784	chr4	26125334	26125335	rs6448435	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RP11-324H7.1	rs6448435-T	NR	2E-9		0.0170137	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
784	chr4	26132360	26132361	rs4692386	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Inflammatory bowel disease	12,882 European ancestry cases, 21,770 European ancestry controls	25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p15.2	NR	rs4692386-G	0.59	1E-8	(EA)	1.0596887		Affymetrix, Illumina [~ 9000000] (imputed)	N
784	chr4	26132360	26132361	rs4692386	26192919	Liu JZ	2015-07-20	Nat Genet	Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.	Crohn's disease	5,956 European ancestry cases, 14,927 European ancestry controls	14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls	4p15.2	intergenic	rs4692386-G	0.59	3E-7	(EA)	1.0656859	[1.04-1.09]	Affymetrix, Illumina [~ 9000000] (imputed)	N
784	chr4	26137018	26137019	rs907499	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	LOC645481	rs907499-G	0.016	4E-6	(Snack intake )	0.05	[NR] kcal increase	Illumina [899892]	N
784	chr4	26152726	26152727	rs77849807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum total protein level	314,921 European ancestry individuals, 133,321 East Asian ancestry individuals	NA	4p15.2		rs77849807-G	NR	1E-35		0.1258	[0.11-0.15] unit increase	Affymetrix, Illumina [20536782] (imputed)	N
784	chr4	26152726	26152727	rs77849807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p15.2		rs77849807-G	NR	1E-30		0.1138	[0.094-0.133] unit increase	Affymetrix, Illumina [20534035] (imputed)	N
784	chr4	26152726	26152727	rs77849807	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Aspartate aminotransferase levels	342,990 European ancestry individuals, 150,068 East Asian ancestry individuals	NA	4p15.2		rs77849807-G	NR	2E-10		0.0584	[0.04-0.076] unit increase	Affymetrix, Illumina [20538469] (imputed)	N
784	chr4	26152726	26152727	rs77849807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum total protein level	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p15.2	NR	rs77849807-G	NR	2E-38		0.1315	[0.11-0.15] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26152726	26152727	rs77849807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Serum albumin levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p15.2	NR	rs77849807-G	NR	4E-29		0.1136	[0.094-0.133] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26152726	26152727	rs77849807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Non-albumin protein levels	313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals	NA	4p15.2	NR	rs77849807-G	NR	3E-10		0.0637	[0.044-0.083] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26152726	26152727	rs77849807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase to alanine aminotransferase ratio	341,165 European ancestry individuals, 5,981 African ancestry individuals, 7,309 South Asian ancestry individuals	NA	4p15.2	NR	rs77849807-G	NR	3E-10		0.0612	[0.042-0.08] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26152726	26152727	rs77849807	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Aspartate aminotransferase levels	341,246 European ancestry individuals, 5,982 African ancestry individuals, 7,313 South Asian ancestry individuals	NA	4p15.2	NR	rs77849807-G	NR	8E-12		0.0663	[0.047-0.085] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26174562	26174563	rs11730491	33462484	Sinnott-Armstrong N	2021-01-18	Nat Genet	Genetics of 35 blood and urine biomarkers in the UK Biobank.	Calcium levels	313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals	NA	4p15.2	NR	rs11730491-T	NR	1E-11		0.0224	[0.016-0.029] unit increase	Affymetrix [9000000] (imputed)	N
784	chr4	26206513	26206514	rs73245728	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p15.2	NR	rs73245728-?	NR	1E-10				Affymetrix [~ 8270000] (imputed)	N
784	chr4	26208842	26208843	rs17823089	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.2	NR	rs17823089-?	NR	2E-9				Affymetrix [~ 8270000] (imputed)	N
785	chr4	26275446	26275447	rs16878236	32888494	Vuckovic D	2020-09-01	Cell	The Polygenic and Monogenic Basis of Blood Traits and Diseases.	Monocyte percentage of white cells	408,112 British individuals	NA	4p15.2	RBPJ	rs16878236-C	0.06597	1E-10		0.028762307	[0.02-0.038] unit increase	Affymetrix [93095623] (imputed)	N
785	chr4	26282805	26282806	rs73114543	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	Neutrophil count	627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.2	NR	rs73114543-G	0.0576261	6E-11				Affymetrix, Illumina [23114412] (imputed)	N
785	chr4	26295420	26295421	rs7689800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7689800-C	NR	3E-8		0.0180531	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
785	chr4	26295420	26295421	rs7689800	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7689800-C	NR	4E-8		0.0178901	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
785	chr4	26298287	26298288	rs79260345	32888493	Chen MH	2020-09-01	Cell	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.	White blood cell count	746,667 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals	NA	4p15.2	NR	rs79260345-A	0.0597259	2E-12				Affymetrix, Illumina [24649327] (imputed)	N
785	chr4	26299124	26299125	rs1877209	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	4p15.2	RBPJ	rs1877209-T	NR	7E-6		1.4774	NR	Illumina [up to 4495750] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7695004-C	NR	2E-10		0.0193825	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7695004-C	NR	1E-11		0.0229773	[0.016-0.03] unit increase	Affymetrix [323858] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7695004-C	NR	2E-10		0.0194377	[0.013-0.025] unit increase	Affymetrix [319769] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7695004-C	NR	8E-12		0.0231265	[0.017-0.03] unit increase	Affymetrix [127266] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7695004-C	NR	4E-12		0.021325	[0.015-0.027] unit increase	Affymetrix [321114] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7695004-C	NR	1E-11		0.0208438	[0.015-0.027] unit increase	Affymetrix [321169] (imputed)	N
785	chr4	26303025	26303026	rs7695004	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7695004-C	NR	2E-8		0.0188539	[0.012-0.025] unit increase	Affymetrix [323858] (imputed)	N
785	chr4	26307175	26307176	rs6844659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	315,284 European ancestry male individuals	NA	4p15.2	NR	rs6844659-A	0.3726	2E-17		0.0174	[0.013-0.021] unit increase	NR [~ 27400000] (imputed)	N
785	chr4	26307175	26307176	rs6844659	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	316,772 European ancestry male individuals	NA	4p15.2	NR	rs6844659-A	0.3727	5E-16		0.0165	[0.013-0.02] unit increase	NR [~ 27400000] (imputed)	N
785	chr4	26307973	26307974	rs11728265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4p15.2	RBPJ	rs11728265-C	NR	1E-8		0.0177982	[0.012-0.024] unit increase	Affymetrix [323858] (imputed)	N
785	chr4	26307973	26307974	rs11728265	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs11728265-C	NR	3E-8		0.0174531	[0.011-0.024] unit increase	Affymetrix [127266] (imputed)	N
785	chr4	26308791	26308792	rs17644283	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	697,734 European ancestry individuals	NA	4p15.2	NA	rs17644283-A	0.3879	3E-17		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
785	chr4	26308791	26308792	rs17644283	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-hip ratio	381,152 European female individuals	NA	4p15.2	NR	rs17644283-A	0.3879	3E-17		0.0148	[0.011-0.018] unit increase	NR [~ 27400000] (imputed)	N
785	chr4	26331432	26331433	rs7694707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7694707-A	NR	1E-8		0.0167135	[0.011-0.022] unit increase	Affymetrix [321114] (imputed)	N
785	chr4	26331432	26331433	rs7694707	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	A body shape index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7694707-A	NR	3E-8		0.0163079	[0.011-0.022] unit increase	Affymetrix [321169] (imputed)	N
785	chr4	26331432	26331433	rs7694707	30598549	Morris JA	2018-12-31	Nat Genet	An atlas of genetic influences on osteoporosis in humans and mice.	Heel bone mineral density	426,824 British ancestry individuals	NA	4p15.2	RBPJ	rs7694707-A	0.3785	5E-10		0.0118894	[0.0082-0.0156] unit increase	NR [13737936] (imputed)	N
785	chr4	26331432	26331433	rs7694707	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Heel bone mineral density	approximately 446,000 European ancestry individuals	NA	4p15.2		rs7694707-?	NR	1E-12				NR [~ 8900000] (imputed)	N
785	chr4	26331470	26331471	rs7694869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7694869-A	NR	7E-9		0.0169099	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
785	chr4	26331470	26331471	rs7694869	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs7694869-A	NR	4E-9		0.0172101	[0.011-0.023] unit increase	Affymetrix [319769] (imputed)	N
785	chr4	26331470	26331471	rs7694869	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	Triglyceride levels	441,016 European ancestry individuals	NA	4p15.2	RBPJ	rs7694869-A	0.376163	5E-8		0.0112396	[0.0072-0.0153] unit increase	Affymetrix [NR] (imputed)	N
785	chr4	26331471	26331472	rs7695029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs7695029-C	NR	3E-8		0.017946	[0.012-0.024] unit increase	Affymetrix [127266] (imputed)	N
786	chr4	26352362	26352363	rs6853254	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-to-hip ratio adjusted for BMI	660,648 European ancestry individuals	NA	4p15.2	NR	rs6853254-T	0.35	1E-21		0.019	[0.015-0.023] unit increase	Affymetrix [2446094] (imputed)	N
786	chr4	26352362	26352363	rs6853254	30575882	Lotta LA	2018-12-01	JAMA	Association of Genetic Variants Related to Gluteofemoral vs Abdominal Fat Distribution With Type 2 Diabetes, Coronary Disease, and Cardiovascular Risk Factors.	Waist-hip ratio	663,598 European ancestry individuals	NA	4p15.2	NR	rs6853254-T	0.35	5E-8				Affymetrix [2446094] (imputed)	N
786	chr4	26353629	26353630	rs142536884	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.2	NR	rs142536884-G	0.01742	2E-8	(USP5)	0.1182	NR unit increase	Illumina [1671387] (imputed)	N
786	chr4	26357892	26357893	rs2153155	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Waist-to-hip ratio adjusted for BMI	379,501 European ancestry female individuals	NA	4p15.2	NR	rs2153155-T	0.6507	4E-20		0.0174	[0.014-0.021] unit decrease	NR [~ 27400000] (imputed)	N
786	chr4	26365398	26365399	rs2725308	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Waist-hip ratio	approximately 458,000 European ancestry individuals	NA	4p15.2		rs2725308-?	NR	1E-21				NR [~ 8900000] (imputed)	N
786	chr4	26392138	26392139	rs73810222	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p15.2	NR	rs73810222-?	NR	2E-6		0.019531	[0.012-0.028] unit increase	Affymetrix [805426] (imputed)	N
786	chr4	26401986	26401987	rs3109841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist-to-hip ratio adjusted for BMI	457,690 European ancestry individuals	NA	4p15.2	NR	rs3109841-?	NR	2E-20				Affymetrix [~ 8270000] (imputed)	N
786	chr4	26401986	26401987	rs3109841	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Waist circumference adjusted for body mass index	457,690 European ancestry individuals	NA	4p15.2	NR	rs3109841-?	NR	2E-18				Affymetrix [~ 8270000] (imputed)	N
786	chr4	26447252	26447253	rs3113029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-to-hip ratio adjusted for BMI	186,825 British ancestry men	NA	4p15.2	RBPJ	rs3113029-G	NR	7E-10		0.0198209	[0.014-0.026] unit increase	Affymetrix [323858] (imputed)	N
786	chr4	26447252	26447253	rs3113029	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist-hip index	186,825 British ancestry men	NA	4p15.2	RBPJ	rs3113029-G	NR	5E-10		0.0199963	[0.014-0.026] unit increase	Affymetrix [127266] (imputed)	N
786	chr4	26447386	26447387	rs113569359	33308445	Ortiz-Fernandez L	2020-12-03	Am J Hum Genet	Identification of susceptibility loci for Takayasu arteritis through a large multi-ancestral genome-wide association study.	Takayasu arteritis	286 European ancestry cases, 2,652 European ancestry controls, 76 Han Chinese ancestry cases, 889 Han Chinese ancestry controls, 46 South Asian ancestry cases, 501 South Asian ancestry controls, 683 Turkish ancestry cases, 1,721 Turkish ancestry controls	NA	4p15.2	RBPJ	rs113569359-A	NR	6E-6		1.8318	NR	Illumina [up to 4495750] (imputed)	N
786	chr4	26459238	26459239	rs946347	34021172	Christakoudi S	2021-05-21	Sci Rep	GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.	Waist circumference adjusted for body mass index	219,872 British ancestry women	NA	4p15.2	RBPJ	rs946347-C	NR	2E-8		0.017169	[0.011-0.023] unit increase	Affymetrix [321114] (imputed)	N
787	chr4	26511288	26511289	rs12499371	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	4p15.2	CCKKR	rs12499371-A	0.44	7E-6	(Right superior frontal gyrus)	703.9	[NR] unit increase	Affymetrix [517946]	N
787	chr4	26520266	26520267	rs141854496	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p15.2	NR	rs141854496-?	NR	6E-7		0.028313	[0.017-0.039] unit increase	Affymetrix [805426] (imputed)	N
787	chr4	26589069	26589070	rs1826063	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Cardiovascular disease	approximately 459,000 European ancestry individuals	NA	4p15.2		rs1826063-?	NR	2E-10				NR [~ 8900000] (imputed)	N
789	chr4	26783452	26783453	rs6825268	26198764	Goes FS	2015-07-21	Am J Med Genet B Neuropsychiatr Genet	Genome-wide association study of schizophrenia in Ashkenazi Jews.	Schizophrenia	592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls	NA	4p15.2	NR	rs6825268-G	NR	4E-7		1.0526316	[NR]	Illumina [7158791] (imputed)	N
789	chr4	26785355	26785356	rs28667801	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Diastolic blood pressure	340,162 European ancestry individuals, 145,515 East Asian ancestry individuals	NA	4p15.2		rs28667801-T	NR	7E-11		0.0131	[0.0092-0.017] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
789	chr4	26785355	26785356	rs28667801	31015401	Wu Y	2019-04-23	Nat Commun	Genome-wide association study of medication-use and associated disease in the UK Biobank.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls	NA	4p15.2	TBC1D19	rs28667801-T	0.406024	4E-10		0.038929112	[0.027-0.051] unit increase	Affymetrix [7288503] (imputed)	N
789	chr4	26785355	26785356	rs28667801	30224653	Evangelou E	2018-09-17	Nat Genet	Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.	Diastolic blood pressure	757,601 European ancestry individuals	249,262 European ancestry individuals	4p15.2	STIM2	rs28667801-A	0.593	2E-20		0.1449	[0.11-0.18] mmHg decrease	Affymetrix, Illumina [~ 7100000] (imputed)	N
789	chr4	26795602	26795603	rs4572866	30578418	Giri A	2018-12-21	Nat Genet	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.	Systolic blood pressure	365,998 European ancestry individuals, 63,490 African ancestry individuals, 22,802 Hispanic individuals, 4,792 Asian ancestry individuals, 2,695 Native American ancestry individuals	299,024 European ancestry individuals, 17,277 individuals	4p15.2	TBC1D19	rs4572866-T	0.6682	3E-12		0.2015	[0.14-0.26] mmHg increase	Affymetrix [NR] (imputed)	N
789	chr4	26808828	26808829	rs7687234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Systolic blood pressure	340,159 European ancestry individuals, 145,505 East Asian ancestry individuals	NA	4p15.2		rs7687234-T	NR	8E-10		0.0117	[0.008-0.0154] unit increase	Affymetrix, Illumina [20537302] (imputed)	N
789	chr4	26808828	26808829	rs7687234	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Mean arterial pressure	360,863 European ancestry individuals, 145,502 East Asian ancestry individuals	NA	4p15.2		rs7687234-T	NR	2E-11		0.013	[0.0093-0.0167] unit increase	Affymetrix, Illumina [20537389] (imputed)	N
789	chr4	26809018	26809019	rs73249870	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (calcium channel blockers)	31,904 European ancestry cases, 172,474 European ancestry controls, 49,327 East Asian ancestry cases, 129,399 East Asian ancestry controls	NA	4p15.2		rs73249870-T	NR	9E-10		0.0418	[0.028-0.055] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
789	chr4	26812736	26812737	rs55924432	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Systolic blood pressure	approximately 422,000 European ancestry individuals	NA	4p15.2		rs55924432-?	NR	3E-12				NR [~ 8900000] (imputed)	N
789	chr4	26813958	26813959	rs59761494	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Medication use (agents acting on the renin-angiotensin system)	62,752 European ancestry cases, 174,778 European ancestry controls, 45,820 East Asian ancestry cases, 132,906 East Asian ancestry controls	NA	4p15.2		rs59761494-T	NR	2E-10		0.0357	[0.025-0.047] unit decrease	Affymetrix, Illumina [15248280] (imputed)	N
789	chr4	26818079	26818080	rs28558138	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Varicose veins	22,037 European ancestry cases, 437,665 European ancestry controls, 474 East Asian ancestry cases, 178,252 East Asian ancestry controls	NA	4p15.2		rs28558138-C	NR	2E-34		0.1328	[0.11-0.15] unit decrease	Affymetrix, Illumina [25842955] (imputed)	N
789	chr4	26818079	26818080	rs28558138	30998689	Shadrina AS	2019-04-18	PLoS Genet	Varicose veins of lower extremities: Insights from the first large-scale genetic study.	Varicose veins	10,861 British ancestry cases, 397,594 British ancestry controls	NA	4p15.2		rs28558138-C	0.420679	3E-23		0.0035457	[0.0028-0.0042] unit decrease	Affymetrix [10829469] (imputed)	N
789	chr4	26818079	26818080	rs28558138	30566020	Fukaya E	2018-12-01	Circulation	Clinical and Genetic Determinants of Varicose Veins.	Varicose veins	9,577 British ancestry cases, 327,959 British ancestry controls	NA	4p15.2	NR	rs28558138-C	0.42	5E-19		0.135	[0.11-0.16] unit decrease	Affymetrix [10972371] (imputed)	N
789	chr4	26869337	26869338	rs7655631	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Calcium levels	315,153 European ancestry individuals, 83,980 East Asian ancestry individuals	NA	4p15.2		rs7655631-C	NR	7E-10		0.0148	[0.01-0.02] unit decrease	Affymetrix, Illumina [20528270] (imputed)	N
790	chr4	26944313	26944314	rs6844153	21829377	Lemaitre RN	2011-07-28	PLoS Genet	Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.	Plasma omega-3 polyunsaturated fatty acid levels (docosapentaenoic acid)	8,866 European ancestry individuals	NA	4p15.2	STIM2	rs6844153-T	NR	6E-7		0.02	[NR] % increase	Affymetrix, Illumina [NR]	N
791	chr4	27000994	27000995	rs6822297	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.2	STIM2	rs6822297-G	0.405	8E-6	(Diet carbohydrate )	0.02	[NR] %energy increase	Illumina [899892]	N
791	chr4	27001674	27001674	rs372867519	33887147	Young WJ	2021-04-22	Circ Genom Precis Med	Genetically-Determined Serum Calcium Levels and Markers of Ventricular Repolarisation: A Mendelian Randomization Study in the UK Biobank.	Calcium levels	305,349 European ancestry individuals	NA	4p15.2	NR	rs372867519-D	0.2722	2E-15		0.002003	[0.0015-0.0025] unit decrease	Affymetrix [NR] (imputed)	N
791	chr4	27019358	27019359	rs113180595	33893285	Guindo-Martinez M	2021-04-23	Nat Commun	The impact of non-additive genetic associations on age-related complex diseases.	Hernia abdominopelvic cavity	6,291 European ancestry cases, 50,346 European ancestry controls	NA	4p15.2		rs113180595-C	0.0043765	2E-8		2.17		Affymetrix [15565029] (imputed)	N
791	chr4	27045048	27045049	rs16878720	27532455	Sun W	2016-08-17	PLoS Genet	Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.	Blood protein levels	1,340 European ancestry individuals	NA	4p15.2	NR	rs16878720-?		5E-6	(CCL13)	0.2801	[NR] unit decrease	Illumina [NR]	N
791	chr4	27066037	27066038	rs11725593	25310821	Kim JH	2014-10-13	PLoS One	A genome-wide association study identifies potential susceptibility loci for Hirschsprung disease.	Hirschsprung disease	123 Korean ancestry cases, 432 Korean ancestry controls	NA	4p15.2	STIM2	rs11725593-?	NR	2E-6	(Conditioned on rs2435357, rs1800860, rs7078220 and rs16879552)			Illumina [757260]	N
792	chr4	27157312	27157313	rs1013532	33692975	Buda P	2021-02-22	Front Pediatr	Association Between rs12037447, rs146732504, rs151078858, rs55723436, and rs6094136 Polymorphisms and Kawasaki Disease in the Population of Polish Children.	Kawasaki disease	119 European ancestry cases, 6,071 European ancestry controls	NA	4p15.2		rs1013532-A	0.03246	2E-6		2.885	1.823-4.565	Illumina [164395]	N
792	chr4	27157541	27157542	rs116723905	29924316	Byun J	2018-06-19	Carcinogenesis	Genome-Wide Association Study of Familial Lung Cancer.	Familial lung adenocarcinoma	775 European ancestry cases, 31,563 European ancestry controls	NA	4p15.2	NR	rs116723905-A	0.01	2E-6		3.69	[2.16-6.30]	Illumina [8672852] (imputed)	N
792	chr4	27179466	27179467	rs6837888	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.2	TBC1D19	rs6837888-?	NR	7E-6	(pyruvate)	0.39960304	[0.23-0.57] unit increase	Affymetrix [at least 2500000] (imputed)	N
792	chr4	27186431	27186432	rs4692174	29367611	Gao B	2018-01-24	Sci Rep	Genome-wide association study of paclitaxel and carboplatin disposition in women with epithelial ovarian cancer.	Carboplatin disposition in epthelial ovarian cancer	42 European ancestry cases, 14 Asian ancestry cases	NA	4p15.2	STIM2, MIR4275	rs4692174-?	NR	7E-6	(adjusted for dose, GFR & AST)	0.88	unit decrease (EA)	Illumina [610255]	N
792	chr4	27194070	27194071	rs13149020	23166209	Smith JG	2012-11-19	Circ Cardiovasc Genet	Impact of ancestry and common genetic variants on QT interval in African Americans.	QT interval	13,105 African American individuals	NA	4p15.2	NR	rs13149020-A	0.45	8E-6		10.69	[6.06-15.32] unit increase	Affymetrix, Illumina [2800000] (imputed)	N
792	chr4	27211960	27211961	rs116171472	29844566	Davies G	2018-05-29	Nat Commun	Study of 300,486 individuals identifies 148 independent genetic loci influencing general cognitive function.	Reaction time	330,069 European ancestry individuals	NA	4p15.2	NR	rs116171472-?	NR	6E-6		0.03465	[0.02-0.05] unit increase	Affymetrix [805426] (imputed)	N
792	chr4	27212222	27212223	rs4574391	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	4p15.2	STIM2	rs4574391-C	0.25	8E-7	(Left superior frontal gyrus)	880.0	[NR] unit decrease	Affymetrix [517946]	N
792	chr4	27245905	27245906	rs75752995	32572223	Hughes DA	2020-06-22	Nat Microbiol	Genome-wide associations of human gut microbiome variation and implications for causal inference analyses.	Gut microbiota (bacterial taxa, rank normal transformation method)	2,223 European ancestry individuals	1,667 European ancestry individuals	4p15.2	intergenic	rs75752995-G	0.0270515618778707	6E-6	(C_Alphaproteobacteria_RNT)	0.45577	[0.26-0.65] unit increase	Illumina [7711310] (imputed)	N
792	chr4	27254627	27254628	rs1906528	25335168	Hashimoto R	2014-10-21	Transl Psychiatry	Common variants at 1p36 are associated with superior frontal gyrus volume.	Superior frontal gyrus grey matter volume	158 Japanese ancestry schizophrenia cases, 378 Japanese ancestry healthy controls	NA	4p15.2	FLJ45721	rs1906528-T	0.17	1E-6	(Right superior frontal gyrus)	966.3	[NR] unit decrease	Affymetrix [517946]	N
793	chr4	27268341	27268342	rs748057	30589442	Whitfield JB	2018-12-27	Alcohol Clin Exp Res	Biomarker and genomic risk factors for liver function test abnormality in hazardous drinkers.	Gamma glutamyl transferase levels in low alcohol consumption	8,716 individuals	NA	4p15.2	NR	rs748057-?	NR	3E-6		0.0196	[0.011-0.028] unit increase	Illumina [~ 7800000] (imputed)	N
793	chr4	27297598	27297599	rs79740699	27629369	Gao J	2016-09-15	Neuropsychopharmacology	Genome-Wide Association Study of Loneliness Demonstrates a Role for Common Variation.	Loneliness (multivariate analysis)	8,490 European ancestry individuals, 1,228 African American individuals, 867 Hispanic American individuals, 175 individuals	NA	4p15.2	LOC101929199, MIR4275	rs79740699-?	NR	6E-6	(EA)			Illumina [7205781] (imputed)	N
793	chr4	27349098	27349099	rs6831198	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	4p15.2		rs6831198-?	NR	1E-5		0.3146		Illumina [5932083] (imputed)	N
793	chr4	27349816	27349817	rs3846343	33686288	Peyrot WJ	2021-03-08	Nat Genet	Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.	Schizophrenia vs autism spectrum disorder (ordinary least squares (OLS))	40,675 schizophrenia cases, 18,381 autism spectrum disorder cases	NA	4p15.2		rs3846343-?	NR	4E-8		0.0165	NR unit decrease	NR [4484088] (imputed)	N
793	chr4	27349816	27349817	rs3846343	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	4p15.2		rs3846343-?	NR	5E-6		0.3046		Illumina [5932083] (imputed)	N
793	chr4	27352005	27352006	rs1000516	31005972	Hwang LD	2019-04-21	Am J Clin Nutr	New insight into human sweet taste: a genome-wide association study of the perception and intake of sweet substances.	Perceived intensity of neohesperidin dihydrochalcone	1,757 European ancestry twins	NA	4p15.2	RP11-415C15.2	rs1000516-G	0.88	8E-6		0.25	[0.13-0.37] unit increase	Illumina [4381914] (imputed)	N
793	chr4	27383784	27383785	rs13107491	32399468	Melhuish Beaupre LM	2020-01-08	Mol Neuropsychiatry	Genome-Wide Association Study of Sleep Disturbances in Depressive Disorders.	Sleep disturbance (changes in sleep) in depressive disorders	36 European ancestry cases, 329 European ancestry controls	NA	4p15.2		rs13107491-?	NR	6E-6		0.3083		Illumina [5932083] (imputed)	N
794	chr4	27433517	27433518	rs210778	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.2		rs210778-G	0.344	1E-9		0.007	[0.005-0.009] unit decrease	NR [NR] (imputed)	N
794	chr4	27490578	27490579	rs10461104	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4p15.2	STIM2	rs10461104-A	0.634	2E-8		0.012726735	[0.0083-0.0171] unit increase	Affymetrix [11514654] (imputed)	N
794	chr4	27490578	27490579	rs10461104	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4p15.2		rs10461104-?	NR	4E-8				NR [~ 8900000] (imputed)	N
794	chr4	27495378	27495379	rs1502249	30696823	Jones SE	2019-01-29	Nat Commun	Genome-wide association analyses of chronotype in 697,828 individuals provides insights into circadian rhythms.	Chronotype	449,734  European ancestry individuals	248,098 European ancestry individuals	4p15.2	STIM2	rs1502249-A	0.5223	3E-8		1.0174506		Affymetrix [11880941] (imputed)	N
795	chr4	27619094	27619095	rs1449760	30794219	MacInnes SJ	2019-02-01	Clin Orthop Relat Res	The 2018 Otto Aufranc Award: How Does Genome-wide Variation Affect Osteolysis Risk After THA?	Osteolysis in total hip arthroplasty	1,096 European ancestry cases, 2,418 European ancestry controls	NA	4p15.2	NR	rs1449760-A	0.52	4E-6		1.33	[1.18-1.50]	Illumina [5411522] (imputed)	N
796	chr4	27731352	27731353	rs192209302	33603002	Gouveia MH	2021-02-18	Sci Rep	Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits.	Diastolic blood pressure (long-term average)	5,304 African American individuals, 13,137 European ancestry individuals, 1,317 Hispanic individuals, 1,439 admixed individuals, 703 Chinese ancestry individuals	6,500 African American individuals, 2,451 European ancestry individuals, 2,869 Hispanic individuals	4p15.1	NR	rs192209302-T	0.0373	8E-7		2.4423	[1.47-3.41] mmHg increase	Affymetrix, Illumina [NR] (imputed)	N
796	chr4	27739483	27739484	rs990966	34624637	Zainul Abidin FN	2021-09-21	Neuroimage Clin	Glucose hypometabolism in the Auditory Pathway in Age Related Hearing Loss in the ADNI cohort.	Age related hearing loss-related regional glucose metabolism (Cochlear nucleus)	228 European ancestry cases, 587 European ancestry controls	NA	4p15.1		rs990966-?	NR	4E-6		0.106	[0.0041-0.2079] unit decrease	Illumina [5082878] (imputed)	N
796	chr4	27744717	27744718	rs4692256	20100581	Shen L	2010-01-22	Neuroimage	Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.	Brain imaging	175 European ancestry Alzheimer cases, 354 European ancestry amnestic mild cognitive impairment cases, 204 European ancestry controls	NA	4p15.1	LOC391642	rs4692256-?	NR	1E-7	(grey matter density of the right hippocampus)			Illumina [530992]	N
796	chr4	27763336	27763337	rs774160312	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Body fat mass	3,399 whole genome sequenced individuals, 11,802 European ancestry individuals	10,670 European ancestry individuals	4p15.1	IGBP1P5	rs774160312-A	0.0014	9E-6		1.6542	[0.93-2.38] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
797	chr4	27813940	27813941	rs7697398	27182965	Pickrell JK	2016-05-16	Nat Genet	Detection and interpretation of shared genetic influences on 42 human traits.	Photic sneeze reflex	32,446 European ancestry cases, 67,249 European ancestry controls	NA	4p15.1	STIM2	rs7697398-?	NR	6E-11		1.091	[1.063-1.120]	Illumina [13729857] (imputed)	N
797	chr4	27904555	27904556	rs75285952	27244217	Fogh I	2016-05-31	JAMA Neurol	Association of a Locus in the CAMTA1 Gene With Survival in Patients With Sporadic Amyotrophic Lateral Sclerosis.	Survival in sporadic amyotrophic lateral sclerosis	4,256 European ancestry cases	NA	4p15.1	LOC105374552	rs75285952-?		8E-7		0.3047	[NR] unit increase	Illumina [7174392] (imputed)	N
798	chr4	27954838	27954839	rs7690143	29738550	de Oliveira Otto MC	2018-05-08	PLoS One	Genome-wide association meta-analysis of circulating odd-numbered chain saturated fatty acids: Results from the CHARGE Consortium.	Circulating odd-numbered chain saturated fatty acid levels (C17:0)	6,016 European ancestry individuals	NA	4p15.1	NR	rs7690143-?	NR	3E-6		0.0615	[0.036-0.087] unit decrease	Affymetrix, Illumina [~ 2500000] (imputed)	N
798	chr4	27964404	27964405	rs11934750	24528284	Ji Y	2014-08-01	Br J Clin Pharmacol	Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.	Response to serotonin reuptake inhibitors in major depressive disorder (plasma drug and metabolite levels)	300 European ancestry Escitalpram treated individuals, 130 European ancestry Citalopram treated individuals	NA	4p15.1	AC007106.1	rs11934750-?	0.160	1E-7	(S-DCT/S-CT ratio, adjusted for CYP2C19)			Illumina [7537437] (imputed)	N
798	chr4	27974058	27974059	rs2058575	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.1	Intergenic	rs2058575-G	0.3273	5E-10		0.015	[0.01-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr4	27977634	27977635	rs4692267	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs4692267-T	0.7436	5E-13	(MTAG)	0.0137	[0.01-0.0174] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
798	chr4	27978760	27978761	rs9993636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.1	Intergenic	rs9993636-T	0.7366	1E-11	(MTAG)	0.0138	[0.0099-0.0177] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
798	chr4	27978760	27978761	rs9993636	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p15.1	Intergenic	rs9993636-C	0.2634	9E-11		0.0144	[0.01-0.019] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
798	chr4	27979910	27979911	rs546436456	32203549	Richardson TG	2020-03-23	PLoS Med	Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis.	HDL cholesterol levels	403,943 European ancestry individuals	NA	4p15.1	RP11-180C1.1	rs546436456-T	0.966752	4E-8		0.0321243	[0.021-0.044] unit increase	Affymetrix [NR] (imputed)	N
798	chr4	28008688	28008689	rs9993475	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs9993475-?	NR	2E-8				Affymetrix [NR]	N
798	chr4	28026259	28026260	rs718794	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs718794-?	NR	4E-6				Affymetrix [NR]	N
798	chr4	28027175	28027176	rs12642744	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs12642744-T	0.744	3E-8	(Conditioned on chr4:28822284, chr4:29082156, chr4:28246049)	0.016590752	[0.011-0.022] unit decrease	NR [~ 10000000] (imputed)	N
799	chr4	28062965	28062966	rs10020574	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4p15.1	STIM2	rs10020574-C	0.2601	2E-8		0.012847368	[0.0084-0.0173] unit increase	Affymetrix [11514654] (imputed)	N
799	chr4	28079842	28079843	rs2160114	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs2160114-T	0.746	3E-14		0.00936896	[0.0069-0.0118] unit decrease	NR [9732723] (imputed)	N
799	chr4	28097291	28097292	rs9994140	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.1		rs9994140-A	0.298	1E-13		0.009	[0.007-0.011] unit increase	NR [NR] (imputed)	N
800	chr4	28245597	28245598	rs58186411	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking cessation (MTAG)	up to 820,192 European ancestry individuals	NA	4p15.1	NR	rs58186411-C	0.241	3E-8		0.0102639	[0.0066-0.0139] unit increase	NR [9732723] (imputed)	N
800	chr4	28246048	28246049	rs59537158	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs59537158-T	0.214	4E-19		0.0121671	[0.0095-0.0148] unit increase	NR [9732723] (imputed)	N
800	chr4	28246048	28246049	rs59537158	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs59537158-T	0.214	5E-13		0.022487495	[0.016-0.029] unit increase	NR [~ 10000000] (imputed)	N
800	chr4	28250237	28250238	rs2309717	25367360	Li Q	2014-11-04	Hum Genet	Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.	Refractive astigmatism	8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged 25 years or older, 6,219 Asian ancestry controls aged 25 years or older, 247 Chinese ancestry cases aged less than 25 years, 670 Chinese ancestry controls aged less than 25 years	NA	4p15.1	STIM2, PCDH7	rs2309717-A	0.089	1E-6	(EA, 25 years or older)	1.143	[1.083-1.206]	Affymetrix, Illumina [NR] (imputed)	N
801	chr4	28333483	28333484	rs28608151	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.1	Intergenic	rs28608151-T	0.7756	6E-11	(MTAG)	0.014	[0.0099-0.0181] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
801	chr4	28347049	28347050	rs7685059	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p15.1	Intergenic	rs7685059-G	0.7696	3E-11		0.0154	[0.011-0.02] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
801	chr4	28386847	28386847	rs10654614	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.1		rs10654614-ATTTATC	NR	6E-9		0.013	[0.0087-0.0173] unit decrease	Affymetrix, Illumina [20538802] (imputed)	N
801	chr4	28390350	28390351	rs73224020	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs73224020-A	0.7115	2E-13	(MTAG)	0.0134	[0.0099-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
801	chr4	28397610	28397611	rs4411981	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs4411981-A	0.708	2E-8	(MTAG)	0.0081	[0.0054-0.0108] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
801	chr4	28417134	28417135	rs7668651	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.1	Intergenic	rs7668651-A	0.7055	2E-11		0.0167	[0.012-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
801	chr4	28437132	28437133	rs292026	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4p15.1	NR	rs292026-A	0.265	2E-16		0.0135587	[0.01-0.017] unit decrease	NR [9732723] (imputed)	N
802	chr4	28474925	28474926	rs4438748	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.1		rs4438748-A	NR	5E-10		0.0162	[0.011-0.021] unit decrease	Affymetrix, Illumina [20539548] (imputed)	N
802	chr4	28489338	28489339	rs73213484	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.1	RP11-180C1.1	rs73213484-A	0.858841	1E-13		0.0146376	[0.011-0.019] unit increase	Affymetrix [12370749]	N
802	chr4	28489338	28489339	rs73213484	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	434,794 European ancestry female individuals	NA	4p15.1	NA	rs73213484-A	0.8565	2E-14		0.0208	[0.016-0.026] unit increase	NR [~ 27400000] (imputed)	N
802	chr4	28514829	28514830	rs73213501	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.1	NR	rs73213501-?	NR	6E-14				Affymetrix [~ 8270000] (imputed)	N
802	chr4	28514829	28514830	rs73213501	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.1		rs73213501-?	NR	3E-14				NR [~ 8900000] (imputed)	N
802	chr4	28514829	28514830	rs73213501	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.1	NA	rs73213501-A	0.8263	1E-14		0.0194	[0.015-0.024] unit increase	NR [~ 27400000] (imputed)	N
802	chr4	28519647	28519648	rs79779463	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	4p15.1	STIM2	rs79779463-?	0.037813	1E-6		2.366938	[1.67426-3.34619]	Affymetrix, Illumina [NR] (imputed)	N
802	chr4	28540929	28540930	rs13125329	30679032	Brazel DM	2018-12-06	Biol Psychiatry	Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use.	Smoking initiation (ever regular vs never regular)	up to 433,216 European ancestry individuals	NA	4p15.1	MIR4275	rs13125329-C	0.258	2E-8		0.0147	[0.0096-0.0198] unit increase	Illumina [~ 250000] (imputed)	N
802	chr4	28547479	28547480	rs12646353	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Worry/vulnerability (special factor of neuroticism)	270,059 British ancestry individuals	NA	4p15.1	ENSG00000250064	rs12646353-T	NR	6E-9		0.0079716	[0.0053-0.0107] unit decrease	Affymetrix [18485882] (imputed)	N
802	chr4	28551236	28551237	rs2458604	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	4p15.1	ENSG00000250064	rs2458604-G	NR	9E-9		0.0088162	[0.0058-0.0118] unit decrease	Affymetrix [18485882] (imputed)	N
802	chr4	28560013	28560014	rs74513683	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Yeast infection	52,218 European ancestry cases, 10,235 European ancestry controls	NA	4p15.1	NR	rs74513683-?	NR	2E-6		0.1231	[0.072-0.174] unit decrease	Illumina [at least 560000] (imputed)	N
802	chr4	28570668	28570669	rs2487818	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.1	STIM2	rs2487818-T	0.469	5E-10		0.0074	[0.005-0.0098] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
803	chr4	28589078	28589079	rs2471711	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation	up to 341,427 European ancestry individuals	NA	4p15.1	NR	rs2471711-T	0.152	1E-8		0.019	[0.012-0.026] unit decrease	NR [~ 10000000] (imputed)	N
803	chr4	28590215	28590216	rs150688018	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer (MTAG)	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p15.1	Intergenic	rs150688018-?		8E-6		1.12	[1.07-1.18]	Illumina [7645193] (imputed)	N
803	chr4	28590215	28590216	rs150688018	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Endometrial cancer	909 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p15.1	Intergenic	rs150688018-?		2E-6		2.31	[1.63-3.27]	Illumina [7645193] (imputed)	N
803	chr4	28609475	28609476	rs10021733	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs10021733-T	0.1475	9E-10		0.0164	[0.011-0.022] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
803	chr4	28632749	28632750	rs79497550	28030426	Mahmoudpour SH	2017-03-27	Pharmacogenet Genomics	Meta-analysis of genome-wide association studies on the intolerance of angiotensin-converting enzyme inhibitors.	Angiotensin-converting enzyme inhibitor intolerance	972 European ancestry intolerant individuals, 4,189 European ancestry tolerant individuals	NA	4p15.1	RP11-123O22.1	rs79497550-?	0.037046	4E-6		2.219817	[1.579697-3.119324]	Affymetrix, Illumina [NR] (imputed)	N
803	chr4	28647810	28647811	rs10027492	30867560	Hill WD	2019-03-13	Mol Psychiatry	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.	Anxiety/tension (special factor of neuroticism)	270,059 British ancestry individuals	NA	4p15.1	ENSG00000250064	rs10027492-A	NR	4E-9		0.0089412	[0.006-0.0119] unit increase	Affymetrix [18485882] (imputed)	N
803	chr4	28659853	28659854	rs6839719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs6839719-T	0.8468	1E-8	(conditional-joint)	0.011	[0.0073-0.0147] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
803	chr4	28659853	28659854	rs6839719	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs6839719-T	0.8468	6E-11	(MTAG)	0.0119	[0.0084-0.0154] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
803	chr4	28687841	28687842	rs10020288	29942085	Nagel M	2018-06-25	Nat Genet	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.	Depressed affect	357,957 European ancestry individuals	NA	4p15.1	NR	rs10020288-A	NR	3E-8		0.01346	[0.0087-0.0182] unit decrease	Affymetrix [10847151] (imputed)	N
803	chr4	28692942	28692943	rs997091	29500382	Nagel M	2018-03-02	Nat Commun	Item-level analyses reveal genetic heterogeneity in neuroticism.	Feeling fed-up	374,971 European ancestry individuals	NA	4p15.1	NR	rs997091-A	0.367352	6E-9		5.83	z score increase	NR [10847151] (imputed)	N
803	chr4	28696849	28696850	rs10009397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs10009397-A	0.1606	4E-11	(MTAG)	0.0148	[0.01-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
803	chr4	28696849	28696850	rs10009397	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.1	Intergenic	rs10009397-A	0.1606	1E-10		0.0198	[0.014-0.026] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
804	chr4	28710550	28710551	rs702	34211149	Mills MC	2021-07-01	Nat Hum Behav	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.	Age at first sexual intercourse	397,338 European ancestry individuals	NA	4p15.1	MIR4275	rs702-A	0.162194	3E-10		0.0180594	[0.013-0.024] unit decrease	NR [16516521] (imputed)	N
804	chr4	28720914	28720915	rs1967109	27225129	Okbay A	2016-05-26	Nature	Genome-wide association study identifies 74 loci associated with educational attainment.	Educational attainment (years of education)	405,072 European ancestry individuals	NA	4p15.1	NR	rs1967109-A	0.1538	4E-8		0.016858093	NR unit decrease	Affymetrix, Illumina, Perlegen [~ 9300000] (imputed)	N
804	chr4	28752053	28752054	rs1038903	25231870	Perry JR	2014-07-23	Nature	Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.	Menarche (age at onset)	Up to 182,413 European ancestry females	NA	4p15.1	PCDH7	rs1038903-T	0.73	2E-11		0.04	[0.028-0.052] unit increase	Affymetrix, Illumina [2441815] (imputed)	N
804	chr4	28786652	28786653	rs60189085	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.1		rs60189085-A	0.661	4E-11		0.008	[0.006-0.01] unit increase	NR [NR] (imputed)	N
804	chr4	28794871	28794872	rs9991479	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Menarche (age at onset)	approximately 242,000 European ancestry individuals	NA	4p15.1		rs9991479-?	NR	2E-14				NR [~ 8900000] (imputed)	N
804	chr4	28822283	28822284	rs1389171	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs1389171-A	0.241	4E-12		0.00875885	[0.0063-0.0112] unit decrease	NR [9732723] (imputed)	N
804	chr4	28822283	28822284	rs1389171	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs1389171-A	0.241	4E-9	(Conditioned on chr4:29082156, chr4:28246049)	0.017472032	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
804	chr4	28823860	28823861	rs16881063	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.1	NR	rs16881063-?	NR	4E-8				Affymetrix [~ 8270000] (imputed)	N
804	chr4	28832787	28832788	rs6833159	25133637	Scannell Bryan M	2014-08-18	PLoS One	Genome-wide association studies and heritability estimates of body mass index related phenotypes in Bangladeshi adults.	Underweight status	953 Bangladeshi ancestry underweight females, 1,269 Bangladeshi ancestry normal weight females, 1,146 Bangladeshi ancestry underweight males, 1,106 normal weight males	NA	4p15.1	MIR4275, PCDH7	rs6833159-T	0.735	3E-7	(males)	0.087	[0.054-0.120] unit increase	Illumina [1208102] (imputed)	N
805	chr4	28922714	28922715	rs73222936	31043756	Stahl EA	2019-05-01	Nat Genet	Genome-wide association study identifies 30 loci associated with bipolar disorder.	Bipolar I disorder	14,879 European ancestry cases, 31,358 European ancestry controls	NA	4p15.1	NR	rs73222936-A	0.0441	3E-7		1.25986		NR [9372253] (imputed)	N
805	chr4	28962836	28962837	rs11933652	31219150	Ekenberg C	2019-06-13	J Infect Dis	Single nucleotide polymorphisms in HLA alleles are associated with HIV-1 viral load in demographically diverse, ART-naive participants from the START trial.	Pre-treatment viral load in HIV-1 infection	1,398 European ancestry individuals, 572 Black individuals, 418 Hispanic individuals, 13 Asian ancestry individuals, 39 individuals	NA	4p15.1	intergenic	rs11933652-C	0.117	3E-16		0.3	[0.23-0.37] unit decrease	Affymetrix [339439]	N
806	chr4	29046056	29046057	rs184687999	33381925	Buchanan VL	2020-12-30	Pediatr Obes	Genome-wide association study identifying novel variant for fasting insulin and allelic heterogeneity in known glycemic loci in Chilean adolescents: The Santiago Longitudinal Study.	Homeostasis model assessment of insulin resistance	543 Chilean individuals	NA	4p15.1	RP11-769N22.1	rs184687999-C	0.05	2E-6		0.415	[0.24-0.59] unit increase	Illumina [NR] (imputed)	N
806	chr4	29082155	29082156	rs55944129	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs55944129-C	0.267	5E-11		0.0080095	[0.0056-0.0104] unit decrease	NR [9732723] (imputed)	N
806	chr4	29082155	29082156	rs55944129	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs55944129-C	0.267	1E-9	(Conditioned on chr4:28246049)	0.017565375	[0.012-0.023] unit decrease	NR [~ 10000000] (imputed)	N
806	chr4	29094797	29094798	rs12508714	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs12508714-T	0.2673	2E-8	(MTAG)	0.0084	[0.0055-0.0113] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
807	chr4	29165348	29165349	rs148573547	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.1	NR	rs148573547-G	0.01394	1E-8	(TMSB4X)	0.2301	NR unit increase	Illumina [1671387] (imputed)	N
807	chr4	29170164	29170165	rs139214349	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxypropylmercapturic acid levels in smokers	362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals	NA	4p15.1	NR	rs139214349-?	NR	6E-8	(AA)	1.3527	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
807	chr4	29170164	29170165	rs139214349	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p15.1	NR	rs139214349-?	NR	1E-8	(AA)	1.2786	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
808	chr4	29324031	29324032	rs1966678	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs1966678-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29324031	29324032	rs1966678	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs1966678-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29324895	29324896	rs16867887	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs16867887-?		3E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29333036	29333037	rs55920741	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs55920741-?		1E-6	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29334491	29334492	rs1836778	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs1836778-?		9E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29335562	29335563	rs6448638	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs6448638-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
808	chr4	29335562	29335563	rs6448638	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	6-month creatinine clearance change response to tenofovir treatment in HIV infection (treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs6448638-?		7E-7	(Hispanic)			Illumina [~ 5140000] (imputed)	N
809	chr4	29369144	29369145	rs73224896	34642315	Ferreiro-Iglesias A	2021-10-12	Nat Commun	Germline determinants of humoral immune response to HPV-16 protect against oropharyngeal cancer.	Oropharynx cancer and human papilloma virus 16 negative oropharyngeal cancer	2,359 European ancestry cases, 565 European ancestry controls	NA	4p15.1		rs73224896-T	NR	1E-6		1.5588		Illumina [up to 7574753] (imputed)	N
810	chr4	29505402	29505403	rs2043443	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs2043443-?	NR	2E-15				Affymetrix [NR]	N
811	chr4	29694697	29694698	rs13148010	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Alcohol consumption (drinks per week) (MTAG)	up to 1,039,210 European ancestry individuals	NA	4p15.1	NR	rs13148010-A	0.421	2E-8		0.00752374	[0.0049-0.0101] unit decrease	NR [~ 9732723] (imputed)	N
811	chr4	29737979	29737980	rs2871406	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Francisellales abundance in stool	5,959 Finnish ancestry individuals	NA	4p15.1		rs2871406-T	0.472036	3E-8		0.0268163	[0.017-0.036] unit decrease	Illumina [7980478] (imputed)	N
811	chr4	29737979	29737980	rs2871406	35115689	Qin Y	2022-02-03	Nat Genet	Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Francisellaceae abundance in stool	5,959 Finnish ancestry individuals	NA	4p15.1		rs2871406-T	0.472036	3E-8		0.028253	[0.018-0.038] unit decrease	Illumina [7980478] (imputed)	N
811	chr4	29739298	29739299	rs10939276	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs10939276-C	0.878	2E-9		0.0101279	[0.0068-0.0134] unit decrease	NR [9732723] (imputed)	N
811	chr4	29744294	29744299	rs137976722	32724131	Li QS	2020-07-28	Sci Rep	Genome-wide association study and polygenic risk score analysis of esketamine treatment response.	Response to esketamine in treatment resistant depression	255 European ancestry individuals	NA	4p15.1	NR	rs137976722-?		2E-6		31.4511	[18.58-44.32] unit decrease	NR [NR] (imputed)	N
812	chr4	29813913	29813914	rs78612928	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-17 levels	7,760 Finnish ancestry individuals	NA	4p15.1	NR	rs78612928-C		3E-6		0.1037	[0.06-0.147] SD units decrease	NR [10700000] (imputed)	N
812	chr4	29830648	29830648	rs35260253	33649051	Duchen D	2021-03-01	Infect Immun	Host genome wide association study of infant susceptibility to <i>Shigella</i>-associated diarrhea.	Shigella-associated diarrhea	143 Bangladeshi cases, 446 Bangladeshi controls	NA	4p15.1	AC109351.1, RP11-390C19.1	rs35260253-?	NR	5E-6				Illumina [5729117] (imputed)	N
813	chr4	29899920	29899921	rs28705717	32141793	Garman L	2020-03-06	Ocul Immunol Inflamm	Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.	Ocular sarcoidosis	260 African American cases, 1,551 African American controls	NA	4p15.1	NR	rs28705717-A	NR	5E-6		1.629	[1.32-2.01]	Illumina [13976150] (imputed)	N
813	chr4	29903051	29903052	rs7442317	21473668	Fliers EA	2011-04-07	World J Biol Psychiatry	Genome-wide association study of motor coordination problems in ADHD identifies genes for brain and muscle function.	Attention deficit hyperactivity disorder motor coordination	890 European ancestry children	296 European ancestry children	4p15.1	intergenic	rs7442317-?	NR	4E-6				Perlegen [384401]	N
813	chr4	29935558	29935559	rs6849373	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Left unilateral cleft lip	68 Asian ancestry cases, 78 European ancestry cases, 70 Hispanic cases, 1,626 controls	NA	4p15.1	NR	rs6849373-?		4E-6		0.51	[0.38-0.68]	Illumina [539473] (imputed)	N
814	chr4	30034295	30034296	rs57837505	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.1	NR	rs57837505-C	0.0122	1E-8	(COQ9)	0.02422	NR unit increase	Illumina [1671387] (imputed)	N
814	chr4	30068212	30068213	rs6818288	23251661	Comuzzie AG	2012-12-04	PLoS One	Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.	Obesity-related traits	815 Hispanic children from 263 families	NA	4p15.1	PCDH7	rs6818288-C	0.124	6E-6	(Energy balance )	0.04	[NR] kcal/d increase	Illumina [899892]	N
814	chr4	30075467	30075469	rs199544016	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	Interleukin-12p70 levels	8,270 Finnish ancestry individuals	NA	4p15.1	NR	rs199544016-ATG		9E-6		0.1377	[0.076-0.199] SD units increase	NR [10700000] (imputed)	N
814	chr4	30086103	30086104	rs11931572	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4p15.1	PCDH7	rs11931572-?	NR	9E-7				Affymetrix, Illumina [18800000] (imputed)	N
814	chr4	30086103	30086104	rs11931572	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (2df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4p15.1	PCDH7	rs11931572-?	NR	3E-8	(African)			Affymetrix, Illumina [18800000] (imputed)	N
814	chr4	30086103	30086104	rs11931572	29455858	Sung YJ	2018-02-15	Am J Hum Genet	A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure.	Diastolic blood pressure x smoking status (ever vs never) interaction (1df test)	43,016 European ancestry ever smokers, 37,535 European ancestry never smokers, 12,693 African ancestry ever smokers, 13,121 African ancestry never smokers, 4,142 Asian ancestry ever smokers, 9,296 Asian ancestry never smokers, 3,228 Hispanic ever smokers, 5,577 Hispanic never smokers	139,127 European ancestry ever smokers, 145,914 European ancestry never smokers, 3,105 African ancestry ever smokers, 3,075 African ancestry never smokers, 70,335 Asian ancestry ever smokers, 78,597 Asian ancestry never smokers, 6,810 Hispanic ever smokers, 11,133 Hispanic never smokers	4p15.1	PCDH7	rs11931572-A	0.9679	3E-6	(African)	3.284	unit increase	Affymetrix, Illumina [18800000] (imputed)	N
815	chr4	30215672	30215673	rs2571468	26148204	Wanga V	2015-09-01	Pharmacogenet Genomics	Genomewide association study of tenofovir pharmacokinetics and creatinine clearance in AIDS Clinical Trials Group protocol A5202.	Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction)	243 European American ancestry tenofovir-treated cases, 149 African American tenofovir-treated cases, 100 Hispanic American tenofovir-treated cases, 9 unknown ancestry tenofovir-treated cases, 243 European American ancestry abacavir-treated cases, 189 African American abacavir-treated cases, 102 Hispanic American abacavir-treated cases, 14 unknown ancestry abacavir-treated cases.	NA	4p15.1	NR	rs2571468-?		6E-6	(African)			Illumina [~ 5140000] (imputed)	N
815	chr4	30258245	30258246	rs80205050	26053186	Park SL	2015-06-08	PLoS One	Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.	3-hydroxy-1-methylpropylmercapturic acid levels in smokers	361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals	NA	4p15.1	NR	rs80205050-?	NR	6E-7	(EA)	0.7611	[NR] unit decrease	Illumina [up to 11892802] (imputed)	N
816	chr4	30402248	30402249	rs138355804	26634245	Lutz SM	2015-12-03	BMC Genet	A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.	Post bronchodilator FEV1/FVC ratio	10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals	NA	4p15.1	Intergenic	rs138355804-T	0.998	5E-6	(AA)	0.291	unit increase	Illumina [NR] (imputed)	N
816	chr4	30403870	30403871	rs9998501	30718454	Arnau-Soler A	2019-02-04	Transl Psychiatry	Genome-wide by environment interaction studies of depressive symptoms and psychosocial stress in UK Biobank and Generation Scotland.	Depressive symptoms x dependent stressful life events interaction (1df test)	4,919 European ancestry individuals	NA	4p15.1	NR	rs9998501-G	0.0199	6E-6		0.157791	NR unit decrease	Illumina [560351]	N
817	chr4	30459033	30459034	rs73216832	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.1	Intergenic	rs73216832-A	0.2394	2E-8	(MTAG)	0.0151	[0.0098-0.0204] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
817	chr4	30460010	30460011	rs16883593	32635940	Nudel R	2020-07-07	BMC Neurosci	Quantitative genome-wide association analyses of receptive language in the Danish High Risk and Resilience Study.	Parent of origin effect on receptive language ability (paternal)	400 European ancestry children	NA	4p15.1	intergenic	rs16883593-G	NR	1E-6		10.64	NR unit decrease	Illumina [up to 299604]	N
817	chr4	30468165	30468166	rs6856768	22832961	Kamboh MI	2012-05-15	Transl Psychiatry	Genome-wide association study of Alzheimer's disease.	Alzheimer's disease	1,291 European ancestry cases, 938 European ancestry controls	509 European ancestry cases, 753 European ancestry controls, 2,218 cases, 2,583 controls	4p15.1	intergenic	rs6856768-?	NR	5E-6		1.18	[NR]	Illumina [2543888] (imputed)	N
817	chr4	30470874	30470875	rs187823997	28928442	Tian C	2017-09-19	Nat Commun	Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.	Mononucleosis	17,457 European ancestry cases, 68,446 European ancestry controls	NA	4p15.1	NR	rs187823997-?	NR	5E-6		3.3484	[1.16-5.54] unit decrease	Illumina [at least 560000] (imputed)	N
817	chr4	30493426	30493427	rs10012947	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to ziprazidone in schizophrenia	408 Han Chinese ancestry cases	NA	4p15.1	PCDH7	rs10012947-C	NR	8E-7		9.1431	[5.56-12.73] unit decrease	Illumina [6097251] (imputed)	N
817	chr4	30501859	30501860	rs13127129	31530331	Thorp JG	2019-09-18	Psychol Med	Genetic heterogeneity in self-reported depressive symptoms identified through genetic analyses of the PHQ-9.	Depressive symptom (sleep problems) (binary trait)	72,302 European ancestry cases, 76,450 European ancestry controls	NA	4p15.1	PCDH7	rs13127129-A	0.499	5E-8		0.01	[0.0061-0.0139] unit increase	NR [9413637] (imputed)	N
817	chr4	30534691	30534692	rs11733439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs11733439-A	0.7881	1E-10	(MTAG)	0.013	[0.0091-0.0169] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
817	chr4	30534691	30534692	rs11733439	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs11733439-A	0.7883	2E-8		0.0096	[0.0063-0.0129] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
818	chr4	30546874	30546875	rs558229323	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Hip circumference adjusted for BMI	1,247 whole genome sequenced European ancestry individuals, 3,052 whole genome sequenced individuals, 29,518 European ancestry individuals, 400 Carlantino (founder/genetic isolate) individuals, 831 Friuli Venezia Giulia (founder/genetic isolate) individuals, 998 Mylopotamos (founder/genetic isolate) individuals, 871 Pomak (founder/genetic isolate) individuals	205,905 European ancestry individuals	4p15.1	PCDH7	rs558229323-T	0.9989	1E-6		1.4974	[0.9-2.1] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
818	chr4	30585993	30585994	rs111345185	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs111345185-A	0.1961	4E-10	(MTAG)	0.0103	[0.0072-0.0134] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
818	chr4	30653205	30653206	rs7664851	30694715	Sakornsakolpat P	2019-01-29	Am J Respir Cell Mol Biol	Genome-Wide Association Analysis of Single Breath Diffusing Capacity of Carbon Monoxide (DLCO).	Diffusing capacity of carbon monoxide	2,584 European ancestry individuals with chronic obstructive pulmonary disease, 3,002 European ancestry healthy individuals, 343 African American individuals with chronic obstructive pulmonary disease, 1,006 African American healthy individuals	NA	4p15.1	PCDH7	rs7664851-C	0.14	3E-6	(EA)	0.13	0.08-0.19 unit increase	Illumina [NR] (imputed)	N
818	chr4	30655141	30655142	rs77685948	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	4p15.1	PCDH7	rs77685948-G	0.32	7E-8		3.14	[2-4.28] unit decrease	Illumina [6097251] (imputed)	N
819	chr4	30703242	30703243	rs4270551	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.1	NR	rs4270551-?	NR	2E-10				Affymetrix [~ 8270000] (imputed)	N
819	chr4	30703242	30703243	rs4270551	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.1	PCDH7	rs4270551-A	0.134	2E-8		0.0097	[0.0064-0.013] unit increase	Affymetrix, Illumina [5869552] (imputed)	N
819	chr4	30703242	30703243	rs4270551	30239722	Pulit SL	2018-09-14	Hum Mol Genet	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.	Body mass index	806,834 European ancestry individuals	NA	4p15.1	NA	rs4270551-A	0.1314	8E-12		0.0174	[0.012-0.022] unit increase	NR [~ 27400000] (imputed)	N
819	chr4	30704526	30704527	rs114326390	25918132	Yucesoy B	2015-04-26	Toxicol Sci	Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma.	Diisocyanate-induced asthma	74 European ancestry cases, 824 European ancestry controls	NA	4p15.1	intergenic	rs114326390-A	0.001	1E-6		33.95	[3.51-328.49]	Illumina [1556551]	N
819	chr4	30749653	30749654	rs9291547	29503163	Yu H	2018-03-01	Lancet Psychiatry	Five novel loci associated with antipsychotic treatment response in patients with schizophrenia: a genome-wide association study.	Response to antipsychotic treatment in schizophrenia	2,413 Han Chinese ancestry cases	1,379 Han Chinese ancestry cases	4p15.1	PCDH7	rs9291547-A	0.48	3E-9		3.18	[2.12-4.24] unit decrease	Illumina [6097251] (imputed)	N
819	chr4	30755683	30755684	rs41530644	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs41530644-?	NR	5E-22				Affymetrix [NR]	N
819	chr4	30765026	30765027	rs6828872	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p15.1	PCDH7	rs6828872-?		3E-8				Affymetrix, Illumina [NR] (imputed)	N
819	chr4	30796106	30796107	rs4557224	31669095	Zhu Z	2019-10-24	J Allergy Clin Immunol	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.	Body mass index	457,822 European ancestry individuals	NA	4p15.1	NR	rs4557224-?	NR	3E-9				Affymetrix [~ 8270000] (imputed)	N
819	chr4	30796106	30796107	rs4557224	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Educational attainment (years of education)	approximately 455,000 European ancestry individuals	NA	4p15.1		rs4557224-?	NR	2E-7				NR [~ 8900000] (imputed)	N
819	chr4	30796106	30796107	rs4557224	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs4557224-T	0.4912	1E-11	(MTAG)	0.0089	[0.0064-0.0114] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
820	chr4	30815088	30815089	rs13138213	34330890	Ip HF	2021-07-30	Transl Psychiatry	Genetic association study of childhood aggression across raters, instruments, and age.	Childhood aggressive behavior	87,485 European ancestry individuals	NA	4p15.1		rs13138213-G	0.237824319	1E-6		0.015066765	[0.0089-0.0212] unit decrease	Affymetrix, Illumina [up to 7284995] (imputed)	N
820	chr4	30827786	30827787	rs6815248	30019117	Liu J	2018-07-17	Hum Genet	The coexistence of copy number variations (CNVs) and single nucleotide polymorphisms (SNPs) at a locus can result in distorted calculations of the significance in associating SNPs to disease.	Adolescent idiopathic scoliosis	196 cases, 303 controls	NA	4p15.1	NR	rs6815248-?	NR	1E-24				Affymetrix [NR]	N
820	chr4	30832496	30832497	rs7685813	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Serum albumin levels	315,268 European ancestry individuals, 120,539 East Asian ancestry individuals	NA	4p15.1		rs7685813-G	NR	6E-9		0.0129	[0.0086-0.0172] unit decrease	Affymetrix, Illumina [20534035] (imputed)	N
820	chr4	30839805	30839806	rs73214903	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	4p15.1	PCDH7	rs73214903-A	0.8699	2E-8		0.019856308	[0.013-0.027] unit decrease	Affymetrix [11515109] (imputed)	N
820	chr4	30840330	30840331	rs7656673	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Body size at age 10	453,169 European ancestry individuals	NA	4p15.1	PCDH7	rs7656673-A	0.599358	6E-16		0.011556	[0.0088-0.0144] unit decrease	Affymetrix [12370749]	N
820	chr4	30842779	30842780	rs4527444	32376654	Richardson TG	2020-05-06	BMJ	Use of genetic variation to separate the effects of early and later life adiposity on disease risk: mendelian randomisation study.	Adult body size	453,169 European ancestry individuals		4p15.1	PCDH7	rs4527444-A	0.458691	9E-12		0.00939213	[0.0067-0.0121] unit decrease	Affymetrix [12370749]	N
820	chr4	30842779	30842780	rs4527444	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Body mass index	approximately 458,000 European ancestry individuals	NA	4p15.1		rs4527444-?	NR	1E-12				NR [~ 8900000] (imputed)	N
820	chr4	30846425	30846426	rs543659530	33632238	Song Y	2021-02-25	J Transl Med	Identification of susceptibility loci for cardiovascular disease in adults with hypertension, diabetes, and dyslipidemia.	Cardio-cerebrovascular disease in diabetes mellitus	497 Korean ancestry cases, 4,815 Korean ancestry controls	NA	4p15.1		rs543659530-A	0.01287	2E-6		2.948	[1.895-4.586]	Affymetrix [7975321] (imputed)	N
820	chr4	30851033	30851034	rs150144185	30348214	Zhang Q	2018-10-22	Genome Med	Genotype effects contribute to variation in longitudinal methylome patterns in older people.	DNA methylation variation (age effect)	Up to 954 individuals	NA	4p15.1	NR	rs150144185-?	NR	2E-8				Illumina [7760689] (imputed)	N
820	chr4	30900190	30900191	rs73108238	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4p15.1	PCDH7	rs73108238-T	0.2424	1E-8		0.012947185	[0.0085-0.0174] unit decrease	Illumina [9339358] (imputed)	N
820	chr4	30910984	30910985	rs141331503	33830181	Tideman JWL	2021-04-08	JAMA Ophthalmol	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.	High myopia	3,164 European ancestry high myopic cases, 21,416 European ancestry emmetropia controls	NA	4p15.1	NR	rs141331503-?	NR	2E-6		0.891953	[0.53-1.26] unit increase	NR [13958389] (imputed)	N
821	chr4	30949605	30949606	rs4692493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical thickness	33,748 European ancestry individuals	NA	4p15.1		rs4692493-A	0.45	3E-31		11.63	z score increase	Affymetrix [9061022] (imputed)	N
821	chr4	30949605	30949606	rs4692493	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise cortical surface area	33,748 European ancestry individuals	NA	4p15.1		rs4692493-A	0.45	2E-18		8.76	z score increase	Affymetrix [9061022] (imputed)	N
821	chr4	30949605	30949606	rs4692493	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical thickness	35,657 White British ancestry individuals	NA	4p15.1	NR	rs4692493-A	0.488	1E-17				NR [9056863] (imputed)	N
821	chr4	30952941	30952942	rs9992704	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.1	PCDH7	rs9992704-A	0.239	2E-10		0.0088	[0.0061-0.0115] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
821	chr4	30954026	30954027	rs4490422	34560273	Shadrin AA	2021-09-21	Neuroimage	Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology.	Cortical surface area	35,657 White British ancestry individuals	NA	4p15.1	NR	rs4490422-A	0.482	1E-17				NR [9056863] (imputed)	N
821	chr4	30959926	30959927	rs10805301	34910505	van der Meer D	2021-12-15	Sci Adv	The genetic architecture of human cortical folding.	Vertex-wise sulcal depth	33,748 European ancestry individuals	NA	4p15.1		rs10805301-G	0.45	8E-36		12.5	z score increase	Affymetrix [9061022] (imputed)	N
821	chr4	30966259	30966260	rs12505570	33821002	Naqvi S	2021-04-05	Nat Genet	Shared heritability of human face and brain shape.	Brain shape (segment 41)	19,670 European ancestry individuals	NA	4p15.1		rs12505570-?	NR	2E-21				NR [9705931] (imputed)	N
821	chr4	30970821	30970822	rs4358358	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs4358358-A	0.6937	9E-13		0.0109	[0.008-0.0138] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
821	chr4	30974645	30974646	rs7697578	33888908	Pirastu N	2021-04-22	Nat Genet	Genetic analyses identify widespread sex-differential participation bias.	Biological sex	1,301,549 European ancestry cases, 1,160,583 European ancestry controls	NA	4p15.1	NA	rs7697578-G		3E-12		0.0140641	[0.01-0.018] unit decrease	Illumina [13288253] (imputed)	N
821	chr4	31001300	31001301	rs4132132	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Body mass index	359,983 European ancestry individuals, 163,835 East Asian ancestry individuals	NA	4p15.1		rs4132132-C	NR	1E-12		0.0145	[0.011-0.018] unit increase	Affymetrix, Illumina [20538802] (imputed)	N
821	chr4	31012309	31012310	rs4596205	34594039	Sakaue S	2021-09-30	Nat Genet	A cross-population atlas of genetic associations for 220 human phenotypes.	Weight	360,116 European ancestry individuals, 165,419 East Asian ancestry individuals	NA	4p15.1		rs4596205-T	NR	6E-10		0.0114	[0.0079-0.0149] unit increase	Affymetrix, Illumina [20539548] (imputed)	N
821	chr4	31060112	31060113	rs568152609	34074324	Wan JY	2021-06-01	Diabetol Metab Syndr	Genome-wide association analysis of metabolic syndrome quantitative traits in the GENNID multiethnic family study.	Triglyceride levels	281 African American individuals from 73 families, 516 European ancestry individuals from 75 families, 125 Japanese American individuals from 15 families, 598 Mexican American individuals from 96 families	NA	4p15.1	PCDH7	rs568152609-C	0.01	5E-9	(African American)	1.36	[0.91-1.81] unit increase	Illumina [up to 13042663] (imputed)	N
822	chr4	31100498	31100499	rs2201945	25387704	Malone SM	2014-12-01	Psychophysiology	Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study.	Electroencephalogram traits	2,383 European ancestry adolescents and 1,643 European ancestry adults from 1,613 families	NA	4p15.1	PCDH7	rs2201945-?	NR	3E-6	(Delta power, Cz)	0.059	[0.034-0.084] unit increase	Illumina [527829]	N
822	chr4	31109185	31109186	rs73218830	33831438	Williams JE	2021-04-05	Genomics	Key genetic variants associated with variation of milk oligosaccharides from diverse human populations.	Human milk oligosaccharide concentration (lacto-N-fucopentaose III) in non-secretors	90 European, Sub-Saharan African, Hispanic or unknown ancestry individuals	NA	4p15.1		rs73218830-?	NR	5E-9				Illumina [1128286]	N
822	chr4	31120751	31120752	rs60159418	30174134	Qiao L	2018-08-16	J Genet Genomics	Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction.	Mouth morphology (principal component model)	424 Uyghur ancestry female individuals, 270 Uyghur ancestry male individuals	108 Uyghur ancestry female individuals, 63 Uyghur ancestry male individuals, 1,080 Han Chinese ancestry female individuals, 424 Han Chinese ancestry male individuals	4p15.1	PCDH7	rs60159418-?	NR	1E-9	(Uyghur, male)	17.0	[NR] unit decrease	Illumina [8100752] (imputed)	N
822	chr4	31133566	31133567	rs16884388	31488892	Masuda T	2019-09-05	Eur J Hum Genet	GWAS of five gynecologic diseases and cross-trait analysis in Japanese.	Uterine fibroids (MTAG)	5,236 Japanese ancestry cases, 39,556 Japanese ancestry controls	NA	4p15.1	Intergenic	rs16884388-?		7E-6		1.03	[1.02-1.04]	Illumina [7645193] (imputed)	N
822	chr4	31141946	31141947	rs16884402	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Number of sexual partners	370,711 European ancestry individuals	NA	4p15.1	PCDH7	rs16884402-T	0.7129	3E-12		0.018281413	[0.013-0.023] unit increase	Affymetrix [11515109] (imputed)	N
822	chr4	31143817	31143818	rs7675916	34446935	Karlsson Linner R	2021-08-26	Nat Neurosci	Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.	Externalizing behaviour (multivariate analysis)	up to 53,293 European ancestry Attention-deficit/hyperactivity disorder individuals, up to 164,684 European ancestry problematic alcohol use individuals, up to 186,875 European ancestry lifetime cannabis use individuals, up to 357,187 European ancestry individuals measuring  reverse-coded age at first sexual intercourse, up to 336,121 European ancestry individuals measuring number of sexual partners, up to 426,379 European ancestry individuals measuring general risk tolerance, up to 1,251,809  European ancestry individuals measuring lifetime smoking initiation	NA	4p15.1		rs7675916-C	0.713	3E-24		0.013	[0.011-0.015] unit increase	NR [NR] (imputed)	N
822	chr4	31146017	31146018	rs3733655	26674333	Traylor M	2015-12-16	Neurology	Genome-wide meta-analysis of cerebral white matter hyperintensities in patients with stroke.	White matter hyperintensities in ischemic stroke	3,670 European ancestry cases	NA	4p15.1	PCDH7	rs3733655-A	0.64	1E-6		1.13	[1.07-1.18]	Affymetrix, Illumina [7567914] (imputed)	N
822	chr4	31147873	31147874	rs1044352	30531953	International League Against Epilepsy Consortium on Complex Epilepsies	2018-12-10	Nat Commun	Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies.	Generalized epilepsy	3,708 European ancestry cases, 61 African American cases, 24,218 European ancestry controls, 2,584 African American controls	NA	4p15.1	PCDH7	rs1044352-T	0.42	2E-9		5.98	NR unit increase	Affymetrix, Illumina [~ 5000000] (imputed)	N
822	chr4	31147873	31147874	rs1044352	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	4p15.1	PCDH7	rs1044352-T	0.5	2E-7	(GGE)	1.14	[1.08-1.22]	Affymetrix, Illumina [NR] (imputed)	N
822	chr4	31151356	31151357	rs28498976	25087078	Anney RJ	2014-07-30	Lancet Neurol	Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies.	Epilepsy	405 European ancestry cases, 127 African American cases, 248 cases, 2,330 European ancestry genetic generalised epilepsy cases, 81 African American genetic generalised epilepsy cases, 195 genetic generalised epilepsy cases, 3,277 European ancestry focal epilepsy cases, 222 African American focal epilepsy cases, 487 Han Chinese ancestry focal epilepsy cases, 1,324 focal epilepsy cases, up to 17,441 European ancestry controls, up to 2,843 African American controls, up to 2,875 Han Chinese ancestry controls, up to 2,998 controls	NA	4p15.1	PCDH7	rs28498976-A	0.46	5E-9	(All epilepsy)	1.11	[1.06-1.15]	Affymetrix, Illumina [NR] (imputed)	N
822	chr4	31151455	31151456	rs28411770	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder (MTAG)	61,421 individuals	NA	4p15.1	NR	rs28411770-?		1E-8				NR [520857]	N
822	chr4	31151455	31151456	rs28411770	32606422	Wu Y	2020-06-30	Transl Psychiatry	Multi-trait analysis for genome-wide association study of five psychiatric disorders.	Attention deficit hyperactivity disorder	55,374 individuals	NA	4p15.1	NR	rs28411770-?		1E-8				NR [8028859]	N
822	chr4	31151465	31151465	rs200721207	32279069	Rovira P	2020-04-12	Neuropsychopharmacology	Shared genetic background between children and adults with attention deficit/hyperactivity disorder.	Attention deficit hyperactivity disorder	17,149 European ancestry cases, 32,411 European ancestry controls	NA	4p15.1	PCDH7	rs200721207-T	0.66	4E-8		1.1	[1.06-1.13]	Illumina [~ 1092418] (imputed)	N
822	chr4	31156177	31156178	rs74879986	23568457	Wade TD	2013-04-09	Int J Eat Disord	Genetic variants associated with disordered eating.	Bulimia nervosa	151 European ancestry female cases, 2,291 European ancestry female controls	NA	4p15.1	intergenic	rs74879986-G	0.975	6E-6		0.14	[0.079-0.201] unit decrease	Illumina [6150213] (imputed)	N
822	chr4	31183329	31183330	rs7679162	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Smoking status (ever vs never smokers)	518,633 European ancestry individuals	NA	4p15.1	PCDH7	rs7679162-T	0.6599	3E-10		0.014406358	[0.0099-0.0189] unit increase	Affymetrix [11514654] (imputed)	N
822	chr4	31184483	31184484	rs58400863	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	General risk tolerance (MTAG)	975,353 European ancestry individuals	NA	4p15.1	PCDH7	rs58400863-A	0.341	1E-15		0.01	[0.0076-0.0124] unit decrease	Affymetrix, Illumina [5869552] (imputed)	N
822	chr4	31184483	31184484	rs58400863	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular) (MTAG)	up to 1,359,002 European ancestry individuals	NA	4p15.1	NR	rs58400863-A	0.347	5E-18		0.00989187	[0.0076-0.0121] unit decrease	NR [9732723] (imputed)	N
822	chr4	31184483	31184484	rs58400863	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Smoking initiation (ever regular vs never regular)	up to 1,232,091 European ancestry individuals	NA	4p15.1	NR	rs58400863-A	0.347	5E-14		0.020171883	[0.015-0.025] unit decrease	NR [~ 10000000] (imputed)	N
822	chr4	31184483	31184484	rs58400863	30595370	Kichaev G	2018-12-27	Am J Hum Genet	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.	Smoking status	approximately 458,000 European ancestry individuals	NA	4p15.1		rs58400863-?	NR	5E-10				NR [~ 8900000] (imputed)	N
823	chr4	31204656	31204657	rs73219118	30643258	Karlsson Linner R	2019-01-14	Nat Genet	Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.	Adventurousness	557,923 European ancestry individuals	NA	4p15.1	PCDH7	rs73219118-T	0.6555	1E-9		0.012480152	[0.0085-0.0165] unit increase	Illumina [9339358] (imputed)	N
823	chr4	31204656	31204657	rs73219118	30643251	Liu M	2019-01-14	Nat Genet	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.	Age of smoking initiation (MTAG)	up to 931,815 European ancestry  individuals	NA	4p15.1	NR	rs73219118-C	0.344	2E-12		0.0109356	[0.0079-0.014] unit increase	NR [9732723] (imputed)	N
823	chr4	31208610	31208611	rs9997440	34288885	Lin WD	2021-07-01	Eur J Endocrinol	Genetic factors of idiopathic central precocious puberty and their polygenic risk in early puberty.	Idiopathic central precocious puberty	256 Han Chinese ancestry cases, 118 Han Chinese ancestry controls	65 Han Chinese ancestry cases, 30 Han Chinese ancestry controls	4p15.1		rs9997440-A	NR	5E-6		2.83	[1.81-4.43]	Affymetrix [NR] (imputed)	N
823	chr4	31252213	31252214	rs28855728	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Total cholesterol in small LDL meal response (OrNLSr)	4,292 individuals	NA	4p15.1		rs28855728-A	0.137089273	4E-8		0.171076	[0.11-0.23] unit decrease	Illumina [7701709] (imputed)	N
823	chr4	31252213	31252214	rs28855728	34610981	Li-Gao R	2021-10-05	Diabetes	Genetic Studies of Metabolomics Change After a Liquid Meal Illuminate Novel Pathways for Glucose and Lipid Metabolism.	Cholesterol esters in small LDL meal response (OrNLSr)	4,292 individuals	NA	4p15.1		rs28855728-A	0.137183056	3E-8		0.173564	[0.11-0.23] unit decrease	Illumina [7701709] (imputed)	N
823	chr4	31290281	31290282	rs61793204	26114229	Ashley-Koch AE	2015-06-12	J Affect Disord	Genome-wide association study of posttraumatic stress disorder in a cohort of Iraq-Afghanistan era veterans.	Post-traumatic stress disorder	949 non-Hispanic black individuals, 759 European ancestry individuals	NA	4p15.1	intergenic	rs61793204-?	NR	9E-6	EA	2.5	[NR]	Illumina [up to 5616481] (imputed)	N
824	chr4	31333615	31333616	rs10025805	31530798	Alliey-Rodriguez N	2019-09-17	Transl Psychiatry	NRXN1 is associated with enlargement of the temporal horns of the lateral ventricles in psychosis.	Fourth ventricle volume	87 European ancestry Schizophrenia cases, 85 African American Schizophrenia cases, 15 Schizophrenia cases, 67 European ancestry Schizoaffective disorder cases, 53 African American Schizoaffective disorder cases, 7 Schizoaffective disorder cases, 130 European ancestry Bipolar disorders cases, 33 African American Bipolar disorders cases, 6 Bipolar disorders cases, 199 European ancestry controls, 79 African American controls, 16 controls	NA	4p15.1	NR	rs10025805-?		9E-6				Illumina [4322238] (imputed)	N
824	chr4	31361571	31361572	rs6849932	34099189	Blokland GAM	2021-03-23	Biol Psychiatry	Sex-Dependent Shared and Nonshared Genetic Architecture Across Mood and Psychotic Disorders.	Schizophrenia, bipolar disorder or major depressive disorder x sex interaction	31,567 European ancestry schizophrenia cases,19,924 European ancestry  bipolar disorder cases, 15,970 European ancestry major depressive disorder cases, 93,025 European ancestry controls	NA	4p15.1	LINC02497, LINC02506	rs6849932-T	NR	8E-6		0.1981	[0.11-0.29] unit decrease	NR [NR] (imputed)	N
824	chr4	31363387	31363388	rs74458816	32372009	de Las Fuentes L	2020-05-05	Mol Psychiatry	Gene-educational attainment interactions in a multi-ancestry genome-wide meta-analysis identify novel blood pressure loci.	Mean arterial pressure x educational attainment (some college) interaction (2df)	27,617 European ancestry individuals with some college education, 20,253 European ancestry individuals without college education, 8,128 African ancestry individuals with some college education, 8,537 African ancestry individuals without college education, 1,138 Asian ancestry individuals with some college education, 10,214 Asian ancestry individuals without college education, 1,869 Hispanic/Latin American individuals with some college education, 3,276 Hispanic/Latin American individuals without college education	131,584 European ancestry individuals with some college education, 110,940 European ancestry individuals without college education, 1,494 African ancestry individuals with some college education, 5,704 African ancestry individuals without college education, 2,339 Asian ancestry individuals with some college education, 8,567 Asian ancestry individuals without college education, 4,133 Hispanic individuals with some college education, 7,498 Hispanic individuals without college education	4p15.1	PCDH7	rs74458816-A		5E-9		3.33	[1.37-5.29] unit decrease	Affymetrix, Illumina [~ 18800000] (imputed)	N
824	chr4	31367069	31367070	rs35131170	31676860	Zhao B	2019-11-01	Nat Genet	Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.	Brain region volumes	19,629 British ancestry individuals	NA	4p15.1	NR	rs35131170-?	NR	5E-8	(right inferior parietal)			NR [9227495] (imputed)	N
824	chr4	31368362	31368363	rs28627593	29064472	Lencer R	2017-10-24	Transl Psychiatry	Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study.	Pursuit maintenance gain	114 African ancestry schizophrenia cases, 69 African schizo-affective cases, 41 African ancestry bipolar disorder cases, 76 African ancestry controls, 116 European ancestry schizophrenia cases, 86 European ancestry schizo-affective cases, 165 European ancestry bipolar disorder cases, 182 European ancestry controls	NA	4p15.1	LOC102723778	rs28627593-A	0.1981	2E-6	(African)			Illumina [4404269] (imputed)	N
824	chr4	31387143	31387144	rs6844280	31374203	Lam M	2019-08-01	Am J Hum Genet	Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.	Cognitive ability, years of educational attainment or schizophrenia (pleiotropy)	328,917 individuals with educational attainment measurements, 107,207 individuals with cognitive ability measurements, 77,096 European ancestry schizophrenia cases, 43,456 European ancestry controls	NA	4p15.1	ENSG00000251434	rs6844280-?	NR	4E-8		0.011314505	[0.0073-0.0153] unit increase	NR [7306098]	N
824	chr4	31397617	31397618	rs6448771	22028671	Surakka I	2011-10-20	PLoS Genet	A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.	Lipid traits	Up to 32,225 European ancestry individuals	11,509 European ancestry individuals, 11,163 individuals	4p15.1	PCDH7	rs6448771-?	NR	5E-9		0.028	[-0.00728-0.06328] unit increase	Affymetrix, Illumina, Perlegen [~ 2500000] (imputed)	N
824	chr4	31416763	31416764	rs289078	33717105	Donkel SJ	2021-02-24	Front Immunol	Common and Rare Variants Genetic Association Analysis of Circulating Neutrophil Extracellular Traps.	Myeloperoxidase-DNA complexes	5,590 European ancestry individuals	NA	4p15.1	LINC02501	rs289078-T		4E-7		0.1	[0.061-0.139] unit increase	Illumina [11789982] (imputed)	N
825	chr4	31505741	31505742	rs188502273	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Weight	1,249 whole genome sequenced European ancestry individuals, 3,559 whole genome sequenced individuals, 46,819 European ancestry individuals, 472 Carlantino (founder/genetic isolate) individuals, 1,172 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,051 Mylopotamos (founder/genetic isolate) individuals, 942 Pomak (founder/genetic isolate) individuals, 1,779 Val Borbera (founder/genetic isolate) individuals	179,022 European ancestry individuals	4p15.1	RP11-665I14.1	rs188502273-A	0.0024	3E-6		1.7536	[1.02-2.48] unit increase	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
825	chr4	31571182	31571183	rs6828387	23823483	Rhee EP	2013-07-02	Cell Metab	A genome-wide association study of the human metabolome in a community-based cohort.	Metabolite levels	2,076 European ancestry individuals	NA	4p15.1	STIM2	rs6828387-?	NR	9E-6	(5-hydroxyindoleacetic acid)	0.15735637	[0.088-0.227] unit increase	Affymetrix [at least 2500000] (imputed)	N
826	chr4	31711139	31711140	rs17594891	34130359	Curtis SW	2021-06-15	Genet Epidemiol	FAT4 identified as a potential modifier of orofacial cleft laterality.	Right unilateral cleft lip	43 Asian ancestry cases, 40 European ancestry cases, 47 Hispanic cases, 1,626 controls	NA	4p15.1	NR	rs17594891-?		6E-6		2.6	[1.72-3.95]	Illumina [539473] (imputed)	N
827	chr4	31839575	31839576	rs36160616	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken	430,445 European ancestry individuals	NA	4p15.1	Intergenic	rs36160616-G	0.2749	1E-8		0.0145	[0.0096-0.0194] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
828	chr4	31886346	31886347	rs13104078	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability	564,698 European ancestry individuals	NA	4p15.1	Intergenic	rs13104078-T	0.7584	1E-15		0.0182	[0.014-0.023] unit decrease	Affymetrix, Illumina [10000000] (imputed)	N
828	chr4	31890469	31890470	rs7680258	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs7680258-T	0.4233	1E-8	(MTAG)	0.0075	[0.005-0.01] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
828	chr4	31893191	31893192	rs9994759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Self-reported math ability (MTAG)	670,471 European ancestry individuals	NA	4p15.1	Intergenic	rs9994759-T	0.7582	6E-16	(MTAG)	0.0169	[0.013-0.021] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
828	chr4	31893191	31893192	rs9994759	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Highest math class taken (MTAG)	811,539 European ancestry individuals	NA	4p15.1	Intergenic	rs9994759-T	0.7576	1E-14	(MTAG)	0.0149	[0.011-0.019] unit decrease	Affymetrix, Illumina [7100000] (imputed)	N
828	chr4	31949042	31949043	rs2177312	25378659	Lemaitre RN	2014-11-06	J Lipid Res	Genetic loci associated with circulating levels of very long-chain saturated fatty acids.	Very long-chain saturated fatty acid levels (fatty acid 22:0)	10,129 European ancestry individuals	NA	4p15.1	PCDH7	rs2177312-T	NR	5E-6		4.584	[NR] Z score increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
829	chr4	31993240	31993241	rs7691051	32231278	Hysi PG	2020-03-30	Nat Genet	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.	Refractive error	542,934 European ancestry individuals	NA	4p15.1	NA	rs7691051-?		4E-11				Affymetrix, Illumina [NR] (imputed)	N
829	chr4	32034405	32034406	rs571131745	28552196	Tachmazidou I	2017-06-01	Am J Hum Genet	Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.	Height	1,249 whole genome sequenced European ancestry individuals, 3,541 whole genome sequenced individuals, 46,910 European ancestry individuals, 471 Carlantino (founder/genetic isolate) individuals, 1,197 Friuli Venezia Giulia (founder/genetic isolate) individuals, 1,043 Mylopotamos (founder/genetic isolate) individuals, 933 Pomak (founder/genetic isolate) individuals, 1,785 Val Borbera (founder/genetic isolate) individuals	205,003 European ancestry individuals	4p15.1	RP11-734I18.1	rs571131745-A	0.0032	6E-7		0.4327	[0.26-0.6] unit decrease	Affymetrix, Illumina, Perlegen [15844966] (imputed)	N
830	chr4	32150028	32150029	rs868456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (years of education)	up to 1,131,881 European ancestry individuals	NA	4p15.1		rs868456-A	0.7117	1E-8		0.0089	[0.006-0.0118] unit increase	Affymetrix, Illumina [10000000] (imputed)	N
830	chr4	32150028	32150029	rs868456	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Educational attainment (MTAG)	1,311,438 European ancestry individuals	NA	4p15.1	Intergenic	rs868456-A	0.7117	3E-8	(MTAG)	0.008	[0.0053-0.0107] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
831	chr4	32249974	32249975	rs17081068	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.1	NR	rs17081068-C	0.07317	3E-8	(GGH)	0.04062	NR unit increase	Illumina [1671387] (imputed)	N
831	chr4	32264996	32264997	rs1670754	30130595	Dominguez-Cruz MG	2018-08-18	Gene	Pilot genome-wide association study identifying novel risk loci for type 2 diabetes in a Maya population.	Type 2 diabetes	45 Maya ancestry cases, 47 Maya ancestry controls	NA	4p15.1	LOC101927363	rs1670754-A	0.2394	5E-7		7.697		Affymetrix [757439]	N
831	chr4	32265037	32265038	rs17081115	29596498	Charles BA	2018-03-29	PLoS One	Analyses of genome wide association data, cytokines, and gene expression in African-Americans with benign ethnic neutropenia.	Low white blood cell count (conditioned on rs2814778)	592 African American individuals with low white blood cell count, 586 African American individuals with high white blood cell count	NA	4p15.1	intergenic	rs17081115-G	0.9411	2E-6		3.02	[2.56-3.48]	Illumina [at least 656747] (imputed)	N
832	chr4	32376726	32376727	rs17081313	27958378	Floyd JS	2016-12-13	Pharmacogenomics J	Large-scale pharmacogenomic study of sulfonylureas and the QT, JT and QRS intervals: CHARGE Pharmacogenomics Working Group.	QT interval (sulfonylurea treatment interaction)	2,095 European ancestry exposed individuals, 42,907 European ancestry unexposed individuals, 1,167 African American exposed individuals, 10,564 African American unexposed individuals, 794 Hispanic/Latino American exposed individuals, 14,330 Hispanic/Latino American unexposed individuals	NA	4p15.1	intergenic	rs17081313-?	NR	2E-7		11.2	[7.08-15.32] ms increase	Affymetrix, Illumina [~ 2500000] (imputed)	N
832	chr4	32393399	32393400	rs28404427	31497858	Dumitrescu L	2019-09-01	Brain	Sex differences in the genetic predictors of Alzheimer's pathology.	Neurofibrillary tangles	3,275 European ancestry women	NA	4p15.1	LINC02353, LOC101928622	rs28404427-A	0.034365	4E-6		0.803649	[0.46-1.15] unit decrease	Affymetrix, Illumina [NR] (imputed)	N
833	chr4	32510534	32510535	rs77686723	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.1	NR	rs77686723-G	0.04355	1E-9	(FHL1)	0.004536	NR unit increase	Illumina [1671387] (imputed)	N
833	chr4	32520711	32520712	rs6817182	32778093	He B	2020-08-10	BMC Biol	Genome-wide pQTL analysis of protein expression regulatory networks in the human liver.	Protein quantitative trait loci (liver)	172 European ancestry individuals, 29 Black individuals, 86 individuals	NA	4p15.1	NR	rs6817182-G	0.04355	1E-9	(FHL1)	0.004536	NR unit increase	Illumina [1671387] (imputed)	N
833	chr4	32555852	32555853	rs1596724	26752167	Taylor JY	2016-01-11	Sci Rep	A Genome-wide study of blood pressure in African Americans accounting for gene-smoking interaction.	Systolic blood pressure (cigarette smoking interaction)	1,083 African American individuals	1,427 African American individuals	4p15.1	LOC102723828	rs1596724-T	0.107	1E-6				Affymetrix [761050]	N
834	chr4	32694693	32694694	rs36004190	30038396	Lee JJ	2018-07-23	Nat Genet	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.	Cognitive performance (MTAG)	402,382 European ancestry individuals	NA	4p15.1	Intergenic	rs36004190-A	0.2382	3E-8	(MTAG)	0.0149	[0.0096-0.0202] unit increase	Affymetrix, Illumina [7100000] (imputed)	N
835	chr4	32770155	32770156	rs80183344	29221444	Divers J	2017-12-08	BMC Genet	Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes.	Coronary artery calcified atherosclerotic plaque (90 or 130 HU threshold) in type 2 diabetes	345 African American cases, 346 African American controls	137 African American cases, 68 African American controls	4p15.1	intergenic	rs80183344-?	NR	5E-6		0.153	[0.073-0.233] unit decrease	Illumina [at least 13000000] (imputed)	N
835	chr4	32788073	32788074	rs138847915	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	4p15.1	NR	rs138847915-C		7E-6		0.8451	[0.47-1.22] SD units decrease	NR [10700000] (imputed)	N
835	chr4	32834209	32834210	rs182921547	30820047	Kunkle BW	2019-02-28	Nat Genet	Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates A?, tau, immunity and lipid processing.	Alzheimer's disease (late onset)	21,982 European ancestry cases, 41,944 European ancestry controls	up to 13,292 European ancestry cases, up to 17,219 European ancestry controls	4p15.1	PCDH7	rs182921547-?	NR	8E-7		1.38	[1.21-1.56]	Affymetrix, Illumina [11480632] (imputed)	N
835	chr4	32845986	32845987	rs36160095	30808802	Freidin M	2019-02-26	J Med Genet	Genome-wide meta-analysis identifies genetic locus on chromosome 9 associated with Modic changes.	Modic changes	994 European ancestry cases, 835 European ancestry controls	NA	4p15.1	intergenic	rs36160095-A	0.938	3E-6		1.87	[1.43-2.45]	Illumina [5479070] (imputed)	N
836	chr4	32918841	32918842	rs190135744	30120083	Ferguson A	2018-08-14	EBioMedicine	Genome-Wide Association Study of Circadian Rhythmicity in 71,500 UK Biobank Participants and Polygenic Association with Mood Instability.	Disrupted circadian rhythm (low relative amplitude of rest-activity cycles)	at least 2,700 European ancestry cases, at least 68,300 European ancestry controls	NA	4p15.1	Intergenic	rs190135744-C	NR	3E-7		0.285	unit increase	Affymetrix [7969123] (imputed)	N
836	chr4	32981056	32981056	rs201609026	26423011	Wain LV	2015-09-27	Lancet Respir Med	Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank.	Lung function (low FEV1 vs high FEV1) x smoking interaction	9,745 European ancestry never smokers with low FEV1 measurements, 4,902 European ancestry never smokers with high FEV1 measurements, 9,748 European ancestry heavy smokers with low FEV1 measurements, 4,906 European ancestry heavy smokers with high FEV1 measurements	NA	4p15.1	NR	rs201609026-?	NR	4E-7				Affymetrix [28509962] (imputed)	N
837	chr4	33079654	33079655	rs1448284	20197096	Stein JL	2010-03-01	Neuroimage	Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.	Brain structure (temporal lobe volume)	173 European ancestry Alzheimer's disease cases, 361 European ancestry Mild Cognitive Impairment cases, 208 European ancestry controls	NA	4p15.1	intergenic	rs1448284-T	0.03	2E-6		9939.9	[NR] unit increase	Illumina [546314]	N
837	chr4	33123142	33123143	rs138274846	27989323	Ahola-Olli AV	2016-12-13	Am J Hum Genet	Genome-wide Association Study Identifies 27 Loci Influencing Concentrations of Circulating Cytokines and Growth Factors.	beta-nerve growth factor levels	3,531 Finnish ancestry individuals	NA	4p15.1	NR	rs138274846-C		6E-6		0.8525	[0.48-1.23] SD units decrease	NR [10700000] (imputed)	N
838	chr4	33195209	33195210	rs7670699	35165267	Boua PR	2022-02-14	Nat Commun	Genetic associations with carotid intima-media thickness link to atherosclerosis with sex-specific effects in sub-Saharan Africans.	Carotid Intima-media thickness (mean of the maximum cIMT)	3,963 Sub-Saharan African ancestry females	NA	4p15.1		rs7670699-A	0.0328791	1E-5		0.0358163	[0.02-0.052] unit increase	Illumina [13900000] (imputed)	N
838	chr4	33203139	33203140	rs10517270	22005931	Kamboh MI	2011-10-18	Mol Psychiatry	Genome-wide association analysis of age-at-onset in Alzheimer's disease.	Alzheimer's disease (age of onset)	1,190 European ancestry cases, 1,032 cases	NA	4p15.1	intergenic	rs10517270-?	NR	4E-6		3.3056	unit decrease	Illumina [2543888] (imputed)	N
840	chr4	33497362	33497363	rs192474109	31250787	Fawns-Ritchie C	2019-06-01	Twin Res Hum Genet	Genetic Contributions to Health Literacy.	Health literacy	1,771 English ancestry cases, 4,012 English ancestry controls	NA	4p15.1	AC079772.1	rs192474109-G	NR	7E-6		0.02604	[0.015-0.037] unit decrease	Illumina [NR] (imputed)	N
841	chr4	